207 282 14 42 chr12 404 475 -144282014 + L2 LINE L2 3196 3264 -8 190 226 132 19 chr12 5233 5286 -144277203 + MIR SINE MIR 87 145 -63 180 0 0 0 chr12 7180 7200 -144275289 + (CAGGG)n Simple_repeat Simple_repeat 2 21 0 289 200 13 40 chr12 8632 8707 -144273782 + MIR SINE MIR 51 123 -139 213 309 37 12 chr12 8911 8992 -144273497 + MIR SINE MIR 180 262 0 263 225 119 0 chr12 10716 10820 -144271669 + MIR SINE MIR 25 150 -62 518 282 98 20 chr12 10837 11040 -144271449 + MIR SINE MIR 5 236 -26 323 68 85 0 chr12 11052 11111 -144271378 - MADE1 DNA Mariner -14 66 3 632 353 95 16 chr12 11233 11550 -144270939 - L3b LINE CR1 -95 1488 1147 340 320 176 0 chr12 11704 11857 -144270632 + MIR SINE MIR 7 186 -76 791 175 36 0 chr12 11884 12021 -144270468 - FLAM_C SINE Alu -1 142 1 212 275 0 66 chr12 12024 12115 -144270374 + CT-rich Low_complexity Low_complexity 1 85 0 268 299 210 6 chr12 12672 12829 -144269660 + MIR SINE MIR 68 256 -6 401 329 77 31 chr12 13125 13347 -144269142 + L1MC4 LINE L1 7429 7660 -382 499 310 66 68 chr12 14340 14814 -144267675 + L2 LINE L2 2713 3205 -108 298 283 93 78 chr12 14838 15043 -144267446 - L2 LINE L2 -6 3307 3100 249 339 179 9 chr12 15203 15427 -144267062 - L2 LINE L2 -577 2737 2476 * 319 269 39 48 chr12 15417 15521 -144266968 + L2 LINE L2 3166 3268 -4 323 167 23 92 chr12 16244 16418 -144266071 + G-rich Low_complexity Low_complexity 2 163 0 194 389 56 0 chr12 17242 17350 -144265139 - L3b LINE CR1 -130 1453 1340 236 229 0 0 chr12 17403 17451 -144265038 + L2 LINE L2 3262 3309 -4 3248 279 97 18 chr12 18705 20174 -144262315 + HAL1 LINE L1 78 1662 -845 532 297 170 3 chr12 20187 20557 -144261932 + HAL1 LINE L1 1723 2154 -353 253 212 9 80 chr12 20558 20661 -144261828 + HAL1 LINE L1 2214 2310 -197 1912 135 0 0 chr12 20661 20928 -144261561 + AluSx SINE Alu 1 267 -45 768 275 48 7 chr12 20956 21229 -144261260 + L1ME3 LINE L1 5879 6162 0 528 253 66 11 chr12 21237 21419 -144261070 + HAL1 LINE L1 2306 2497 -10 313 341 29 0 chr12 23258 23396 -144259093 + MIR3 SINE MIR 52 193 -15 323 324 11 28 chr12 24732 24914 -144257575 + GA-rich Low_complexity Low_complexity 2 180 0 417 289 35 52 chr12 25595 25768 -144256721 + MER5B DNA MER1_type 1 170 -8 184 214 18 71 chr12 26131 26187 -144256302 + L3 LINE CR1 1492 1544 -33 195 215 139 25 chr12 26763 26842 -144255647 - MIR SINE MIR -108 154 67 205 325 50 50 chr12 26967 27087 -144255402 - MIR SINE MIR -29 233 114 1055 326 67 41 chr12 27473 28411 -144254078 - L2 LINE L2 -1 3271 2313 771 279 165 0 chr12 28730 29135 -144253354 + L2 LINE L2 1640 2111 -1203 299 344 139 35 chr12 29492 30071 -144252418 + L2 LINE L2 2545 3272 0 947 189 22 11 chr12 31240 31425 -144251064 - MER5A DNA MER1_type -2 187 1 381 335 12 48 chr12 31478 31645 -144250844 + MIR SINE MIR 96 256 -6 324 256 0 23 chr12 31916 32002 -144250487 + MIR3 SINE MIR 95 178 -30 632 313 55 9 chr12 32081 32312 -144250177 + MIR SINE MIR 3 241 -21 280 179 26 0 chr12 32859 32937 -144249552 + CT-rich Low_complexity Low_complexity 1 80 0 1304 172 12 124 chr12 32937 33275 -144249214 - AluJo SINE Alu -1 311 12 848 196 7 0 chr12 34201 34349 -144248140 + FRAM SINE Alu 20 168 -8 277 239 230 9 chr12 34350 34463 -144248026 - MIR SINE MIR -8 254 117 1558 196 21 7 chr12 34487 34778 -144247711 + AluJo SINE Alu 1 295 -17 369 0 0 0 chr12 35752 35793 -144246696 + (CA)n Simple_repeat Simple_repeat 1 41 0 542 238 89 12 chr12 36149 36317 -144246172 - MIR3 SINE MIR -14 194 14 212 160 0 60 chr12 36902 36952 -144245537 + GA-rich Low_complexity Low_complexity 1 47 0 189 312 48 91 chr12 37148 37334 -144245155 - MIR3 SINE MIR -1 207 30 207 374 49 8 chr12 38018 38141 -144244348 + L2 LINE L2 3167 3294 -19 433 305 0 16 chr12 38906 39151 -144243338 + MER5C DNA MER1_type 25 324 0 238 331 107 22 chr12 39222 39400 -144243089 + MIR SINE MIR 32 224 -38 259 265 265 0 chr12 39401 39503 -144242986 + L2 LINE L2 3185 3313 0 198 118 0 0 chr12 40510 40544 -144241945 + (TCC)n Simple_repeat Simple_repeat 2 35 0 29 84 0 0 chr12 40864 40935 -144241554 + GC_rich Low_complexity Low_complexity 1 71 0 1519 171 0 38 chr12 41657 41950 -144240539 + AluJo SINE Alu 1 282 -30 258 105 0 0 chr12 41952 41990 -144240499 + (T)n Simple_repeat Simple_repeat 1 38 0 350 276 35 55 chr12 41999 42198 -144240291 + L1MC5 LINE L1 7713 7907 -54 2352 235 152 3 chr12 43589 44155 -144238334 - MLT1E1 LTR MaLR 0 654 5 2166 95 3 16 chr12 44473 44777 -144237712 - AluSx SINE Alu -12 300 1 1228 166 0 10 chr12 44814 45007 -144237482 - AluSx SINE Alu -121 191 1 900 292 30 28 chr12 45007 45507 -144236982 - L1M4 LINE L1 -2120 4026 3526 403 119 0 0 chr12 45565 45624 -144236865 - Alu SINE Alu -7 304 246 914 143 0 0 chr12 45632 45765 -144236724 - AluJb SINE Alu -179 133 1 1651 180 3 3 chr12 45766 46055 -144236434 - AluJb SINE Alu -3 309 21 699 296 55 17 chr12 46058 46477 -144236012 - L1M4 LINE L1 -2642 3504 3070 653 106 0 11 chr12 47813 47907 -144234582 + AluJo SINE Alu 44 136 -176 1254 199 3 94 chr12 47909 48023 -144234466 + AluJo SINE Alu 4 127 -185 1600 111 0 0 chr12 48023 48248 -144234241 - AluSg/x SINE Alu -3 309 85 1254 199 3 94 chr12 48248 48464 -144234025 + AluJo SINE Alu 127 304 -8 183 246 116 0 chr12 49032 49101 -144233388 + L2 LINE L2 3021 3097 -216 212 349 0 0 chr12 49166 49229 -144233260 + L2 LINE L2 3217 3279 -34 195 316 32 53 chr12 49353 49448 -144233041 + L3b LINE CR1 1243 1335 -248 751 285 130 12 chr12 50970 51293 -144231196 - MLT1K LTR MaLR 0 588 228 366 311 155 24 chr12 52017 52223 -144230266 - L3 LINE CR1 -12 1565 1333 263 277 43 11 chr12 52386 52480 -144230009 - MIR SINE MIR -132 130 34 583 353 28 8 chr12 54974 55229 -144227260 - MLT1L LTR MaLR -17 598 339 180 0 0 0 chr12 55252 55272 -144227217 + (CCA)n Simple_repeat Simple_repeat 1 20 0 204 125 0 0 chr12 55327 55359 -144227130 + (TAA)n Simple_repeat Simple_repeat 3 34 0 489 232 271 34 chr12 55359 55536 -144226953 - MIR SINE MIR 0 262 44 283 246 184 9 chr12 56532 56646 -144225843 - MER117 DNA MER1_type -9 188 55 357 309 25 56 chr12 56664 56826 -144225663 - MIR3 SINE MIR -49 159 3 262 286 0 13 chr12 58201 58278 -144224211 + (TG)n Simple_repeat Simple_repeat 2 77 0 4300 141 49 59 chr12 58314 59715 -144222774 + pTR5 LTR ERV1 742 2438 0 962 241 56 25 chr12 60267 60553 -144221936 + MLT1F LTR MaLR 240 534 -8 256 238 114 9 chr12 60581 60686 -144221803 - MLT1L LTR MaLR -221 321 206 364 305 198 0 chr12 61785 61982 -144220507 - L1M4 LINE L1 -1882 4264 4029 1113 134 6 0 chr12 61990 62161 -144220328 - AluSg/x SINE Alu -15 295 124 2518 42 3 0 chr12 62161 62468 -144220021 - AluY SINE Alu -3 308 1 1021 343 50 48 chr12 62476 62850 -144219639 - BaEV-int LTR ERV1 -2711 3938 3566 315 0 0 0 chr12 62850 62885 -144219604 + (CCCTAA)n Simple_repeat Simple_repeat 1 35 0 1021 343 50 48 chr12 62885 63352 -144219137 - BaEV-int LTR ERV1 -3083 3566 3095 603 278 147 4 chr12 63877 64129 -144218360 + MER102b DNA MER1_type 51 338 -3 251 308 109 19 chr12 64191 64347 -144218142 - L3 LINE CR1 0 1577 1408 337 246 45 18 chr12 64631 64741 -144217748 - LTR18B LTR ERVL -234 380 268 522 96 0 0 chr12 64793 64866 -144217623 - LTR18B LTR ERVL -212 402 330 211 291 0 0 chr12 64882 64937 -144217552 + CT-rich Low_complexity Low_complexity 2 56 0 1274 323 40 32 chr12 64942 65701 -144216788 - BaEV-int LTR ERV1 -5731 2054 1290 576 333 25 45 chr12 65898 66255 -144216234 - BaEV-int LTR ERV1 -6779 1006 657 245 202 19 106 chr12 67873 67977 -144214512 + MIR3 SINE MIR 87 181 -27 206 125 0 54 chr12 68177 68233 -144214256 + (TTA)n Simple_repeat Simple_repeat 2 54 0 317 302 38 9 chr12 68612 68718 -144213771 - MIR SINE MIR -109 153 45 588 297 80 6 chr12 69230 69451 -144213038 + MIR SINE MIR 22 258 -4 181 330 66 47 chr12 70286 70392 -144212097 + L3b LINE CR1 1342 1449 -134 528 267 142 22 chr12 70870 71095 -144211394 - MIR SINE MIR -3 259 8 394 267 60 0 chr12 71452 71568 -144210921 - MIR SINE MIR -117 145 23 360 239 90 22 chr12 73350 73484 -144209005 - MIR3 SINE MIR -49 159 17 398 333 45 0 chr12 74310 74466 -144208023 - MIR SINE MIR -64 198 36 828 293 129 25 chr12 74847 75243 -144207246 - LTR16A LTR ERVL -7 443 7 268 296 133 104 chr12 75304 75544 -144206945 - L2 LINE L2 0 3272 3026 363 239 55 47 chr12 77092 77290 -144205199 - MIR SINE MIR -9 253 6 359 293 49 0 chr12 77553 77676 -144204813 - MIR3 SINE MIR -11 197 69 216 250 0 0 chr12 77677 77733 -144204756 + (TG)n Simple_repeat Simple_repeat 1 56 0 1082 265 21 11 chr12 77797 78080 -144204409 - LTR16C LTR ERVL -52 439 154 1622 138 12 108 chr12 78409 78742 -144203747 + AluJb SINE Alu 1 301 -1 372 196 19 84 chr12 79109 79216 -144203273 + MIR3 SINE MIR 100 199 -9 193 297 99 0 chr12 79266 79357 -144203132 - L2 LINE L2 -10 3303 3204 2347 98 0 6 chr12 79391 79706 -144202783 + AluSq SINE Alu 1 313 0 356 306 131 33 chr12 79711 79894 -144202595 - MIR SINE MIR -13 249 49 236 291 100 0 chr12 79995 80105 -144202384 - L2 LINE L2 -218 3054 2934 691 266 62 0 chr12 80442 80634 -144201855 - MIR SINE MIR -1 261 58 261 0 0 0 chr12 81831 81860 -144200629 + (TG)n Simple_repeat Simple_repeat 1 29 0 420 286 27 38 chr12 81897 82082 -144200407 + MIR3 SINE MIR 20 202 -6 261 354 82 38 chr12 82142 82300 -144200189 + L3 LINE CR1 338 502 -1075 371 326 21 0 chr12 82747 82888 -144199601 - L2 LINE L2 -272 3041 2898 493 206 70 106 chr12 82988 83187 -144199302 + MER20 DNA MER1_type 2 193 -26 1633 239 268 8 chr12 83204 83988 -144198501 - L2 LINE L2 -508 2806 1819 458 254 98 54 chr12 83988 84264 -144198225 + L1MC5 LINE L1 7510 7797 -164 479 229 118 7 chr12 84305 84458 -144198031 - L2 LINE L2 -1476 1838 1669 302 355 0 8 chr12 84576 84697 -144197792 - MIR SINE MIR 0 262 143 776 253 192 15 chr12 85182 85589 -144196900 - L2 LINE L2 0 3313 2835 470 295 109 6 chr12 85806 85989 -144196500 - MIR SINE MIR -6 256 55 216 305 0 24 chr12 86353 86435 -144196054 + (TATG)n Simple_repeat Simple_repeat 3 82 0 263 194 90 15 chr12 87683 87750 -144194739 + MIR SINE MIR 84 155 -107 291 312 91 26 chr12 87910 88064 -144194425 - L2 LINE L2 -3 3269 3106 547 267 86 16 chr12 88402 88589 -144193900 - MIR SINE MIR -19 243 44 537 345 17 2 chr12 88640 88838 -144193651 - MIR SINE MIR -19 243 43 403 306 67 22 chr12 89012 89146 -144193343 - MLT1G1 LTR MaLR -28 567 428 331 194 0 15 chr12 89196 89263 -144193226 - MLT1G1 LTR MaLR -280 315 250 474 348 98 14 chr12 89282 89710 -144192779 - L2 LINE L2 -1258 2056 1593 210 276 38 57 chr12 89769 89874 -144192615 - MIR SINE MIR -11 251 149 270 277 36 22 chr12 91387 91407 -144191082 - L1MA10 LINE L1 0 6334 6315 3182 228 51 15 chr12 91407 92745 -144189744 - L1ME1 LINE L1 -8 6158 4673 1670 139 41 60 chr12 93440 93756 -144188733 + AluJb SINE Alu 1 310 -2 206 143 29 0 chr12 94341 94376 -144188113 - MER91 DNA MER1_type -117 73 38 272 324 20 20 chr12 95019 95121 -144187368 - MIR SINE MIR -80 182 81 2561 142 51 10 chr12 95622 96037 -144186452 + MSTB1 LTR MaLR 1 432 0 193 267 0 0 chr12 96100 96145 -144186344 - L2 LINE L2 -23 3290 3246 281 272 62 0 chr12 96210 96291 -144186198 + MIR SINE MIR 17 102 -160 349 286 19 23 chr12 96693 97005 -144185484 + C-rich Low_complexity Low_complexity 1 311 0 248 130 22 0 chr12 97025 97071 -144185418 + CT-rich Low_complexity Low_complexity 1 47 0 9968 59 3 0 chr12 97193 98540 -144183949 - L1P LINE L1 -1772 4374 3024 274 224 105 26 chr12 98540 98616 -144183873 + MLT1J LTR MaLR 330 411 -100 806 120 0 0 chr12 98719 98827 -144183662 - FLAM_C SINE Alu -35 108 1 479 49 0 0 chr12 98830 98891 -144183598 + L1P LINE L1 2970 3030 -3116 305 344 0 16 chr12 99004 99132 -144183357 - MLT1J LTR MaLR -270 241 116 270 264 18 36 chr12 99233 99343 -144183146 - L2 LINE L2 -222 3050 2943 906 274 145 3 chr12 99347 99720 -144182769 - MLT1J2 LTR MaLR 0 450 25 309 296 43 17 chr12 100034 100149 -144182340 - MIR SINE MIR -58 204 87 879 157 0 0 chr12 100149 100283 -144182206 + AluJo SINE Alu 1 134 -178 1586 189 36 26 chr12 101825 102211 -144180278 + Charlie5 DNA MER1_type 2234 2623 0 216 341 54 16 chr12 102512 102641 -144179848 + L2 LINE L2 3139 3272 0 521 181 75 8 chr12 102832 102965 -144179524 + L2 LINE L2 2600 2741 -573 1270 234 31 31 chr12 103029 103388 -144179101 + MLT1E-int LTR MaLR 248 606 -765 466 269 147 103 chr12 103589 104237 -144178252 + MLT1E-int LTR MaLR 696 1371 0 1544 228 127 29 chr12 104241 104396 -144178093 + MLT1E LTR MaLR 2 140 -453 2223 133 0 0 chr12 104396 104697 -144177792 + AluSx SINE Alu 1 301 -11 1544 228 127 29 chr12 104697 105067 -144177422 + MLT1E LTR MaLR 140 579 -14 590 324 29 3 chr12 105079 105404 -144177085 + L2 LINE L2 2792 3125 -188 1395 209 0 0 chr12 105405 105673 -144176816 - AluJb SINE Alu -5 307 40 235 230 257 0 chr12 105695 105769 -144176720 + L2 LINE L2 3221 3313 0 223 267 60 26 chr12 106072 106188 -144176301 - MIR SINE MIR -59 149 30 6060 97 11 0 chr12 106973 108159 -144174330 - L1PA10 LINE L1 -5 6163 4962 510 246 22 22 chr12 108706 108840 -144173649 + MIR SINE MIR 20 153 -109 2955 217 71 19 chr12 108911 109709 -144172780 - L1ME1 LINE L1 -2 6164 5325 566 329 46 71 chr12 109725 110141 -144172348 + L2 LINE L2 2230 2628 -686 2153 140 13 0 chr12 110141 110448 -144172041 - AluSx SINE Alu -1 311 1 566 329 46 71 chr12 110448 110620 -144171869 + L2 LINE L2 2628 2803 -511 621 327 59 11 chr12 110661 110933 -144171556 + L2 LINE L2 2910 3194 -78 915 168 23 51 chr12 110958 111154 -144171335 - MER45B DNA AcHobo -541 1040 840 2161 104 0 4 chr12 111154 111433 -144171056 + AluSg SINE Alu 1 278 -32 200 35 35 0 chr12 111433 111462 -144171027 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 915 168 23 51 chr12 111462 111478 -144171011 - MER45B DNA AcHobo -739 842 833 2486 123 47 90 chr12 111697 112288 -144170201 - MER4D LTR ERV1 -337 566 1 505 303 40 21 chr12 112288 112504 -144169985 - L1M2 LINE L1 -600 5574 5349 341 364 64 27 chr12 112535 112925 -144169564 - L1M4 LINE L1 -764 5382 4982 1622 179 65 4 chr12 112939 113218 -144169271 + AluJo SINE Alu 4 299 -13 264 200 0 0 chr12 113486 113536 -144168953 + MIR3 SINE MIR 157 206 -2 531 247 47 65 chr12 113642 113693 -144168796 - MIR3 SINE MIR -6 202 152 669 172 28 50 chr12 113693 113873 -144168616 + MER5B DNA MER1_type 2 177 -1 531 247 47 65 chr12 113873 113991 -144168498 - MIR3 SINE MIR -56 152 36 185 265 29 15 chr12 114290 114358 -144168131 - L2 LINE L2 -210 3062 2994 393 237 61 9 chr12 115501 115615 -144166874 + MIR3 SINE MIR 86 205 -3 198 0 0 0 chr12 117105 117127 -144165362 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 245 352 0 22 chr12 118920 119102 -144163387 + G-rich Low_complexity Low_complexity 1 178 0 * 274 245 11 87 chr12 119012 119196 -144163293 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 372 300 155 20 chr12 119446 119646 -144162843 - MIR SINE MIR -1 261 35 398 240 87 27 chr12 119744 119894 -144162595 - L1ME4a LINE L1 -2 6119 5961 404 175 25 0 chr12 121253 121333 -144161156 - MER45B DNA AcHobo -431 609 528 419 185 62 0 chr12 121334 121415 -144161074 - 5S rRNA rRNA -33 88 3 1700 239 95 14 chr12 121415 121918 -144160571 - MER45B DNA AcHobo -496 544 1 184 154 154 19 chr12 121918 121970 -144160519 + L2 LINE L2 3214 3272 0 325 281 125 23 chr12 122480 122608 -144159881 + MIR3 SINE MIR 22 162 -46 794 294 20 20 chr12 122704 122717 -144159772 - MIR SINE MIR 0 262 250 2285 112 3 0 chr12 122717 123020 -144159469 + AluSc SINE Alu 1 304 -5 794 294 20 20 chr12 123020 123258 -144159231 - MIR SINE MIR -11 251 11 330 195 0 0 chr12 123291 123368 -144159121 + (TCCA)n Simple_repeat Simple_repeat 3 79 0 629 302 80 7 chr12 123721 123996 -144158493 + L3 LINE CR1 1282 1576 -1 2004 166 7 0 chr12 124198 124506 -144157983 + AluJo SINE Alu 1 310 -2 234 286 170 0 chr12 124764 124876 -144157613 - MIR3 SINE MIR -63 145 15 482 276 21 21 chr12 124939 125084 -144157405 - MIR SINE MIR -112 150 6 218 276 105 0 chr12 125385 125461 -144157028 + MIR SINE MIR 46 129 -133 218 281 34 45 chr12 125561 125650 -144156839 + MIR SINE MIR 17 104 -104 1522 83 98 5 chr12 125659 125864 -144156625 - AluY SINE Alu -87 224 1 861 223 31 49 chr12 125864 126151 -144156338 + L1ME2 LINE L1 5599 5880 -286 1929 179 0 0 chr12 126160 126456 -144156033 + AluJb SINE Alu 1 296 -16 18374 150 38 17 chr12 126469 130012 -144152477 + L1PB1 LINE L1 3 3470 -3397 1911 117 4 11 chr12 130012 130278 -144152211 + AluSp SINE Alu 50 313 0 18374 150 38 17 chr12 130278 132762 -144149727 + L1PB1 LINE L1 3470 6192 -675 1632 127 32 118 chr12 132762 133102 -144149387 + AluSq SINE Alu 1 311 -2 18374 150 38 17 chr12 133102 133791 -144148698 + L1PB1 LINE L1 6192 6865 -2 386 278 57 26 chr12 133774 133968 -144148521 + L1ME1 LINE L1 5822 6021 -145 * 333 228 0 0 chr12 133960 134039 -144148450 + L1ME2 LINE L1 6076 6154 -10 * 209 293 0 0 chr12 134066 134124 -144148365 - MER5A DNA MER1_type -45 144 87 1996 173 68 34 chr12 134146 134590 -144147899 + LTR2B LTR ERV1 32 490 0 195 259 37 0 chr12 134593 134647 -144147842 - MER5A DNA MER1_type -105 84 29 911 186 36 0 chr12 135226 135393 -144147096 + FRAM SINE Alu 4 176 0 231 357 43 45 chr12 135838 136142 -144146347 + L2 LINE L2 2924 3270 -2 208 329 14 0 chr12 136280 136350 -144146139 + MIR3 SINE MIR 123 193 -15 245 239 0 42 chr12 136539 136610 -144145879 + CT-rich Low_complexity Low_complexity 4 71 0 224 275 25 0 chr12 137251 137331 -144145158 + C-rich Low_complexity Low_complexity 2 83 0 228 331 16 24 chr12 141085 141209 -144141280 + CT-rich Low_complexity Low_complexity 2 124 0 2184 94 0 7 chr12 142947 143283 -144139206 + AluY SINE Alu 1 334 0 486 324 78 5 chr12 143379 143598 -144138891 + MIR SINE MIR 15 249 -13 1820 109 16 12 chr12 143630 143887 -144138602 + AluSx SINE Alu 55 312 0 198 405 34 6 chr12 144000 144178 -144138311 - L3b LINE CR1 -79 1504 1322 527 270 61 25 chr12 144941 145104 -144137385 - MIR3 SINE MIR -18 190 22 414 0 0 0 chr12 146270 146316 -144136173 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 347 0 40 chr12 147489 147613 -144134876 + MIR SINE MIR 33 151 -57 22 0 0 0 chr12 148225 148247 -144134242 + GC_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr12 148283 148317 -144134172 + GC_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr12 148689 148712 -144133777 + AT_rich Low_complexity Low_complexity 1 23 0 520 272 140 30 chr12 148804 149039 -144133450 + MIR SINE MIR 1 261 -1 320 348 81 36 chr12 149146 149589 -144132900 - L3 LINE CR1 -291 1286 824 1545 166 8 4 chr12 149621 149874 -144132615 - AluJo SINE Alu -17 295 42 430 271 153 20 chr12 149882 150229 -144132260 - L1MC4a LINE L1 -1635 6173 5781 457 301 77 17 chr12 150875 151083 -144131406 - MIR SINE MIR 0 262 28 478 294 27 0 chr12 151966 152112 -144130377 - HERVI LTR ERV1 -2573 5212 5063 270 257 40 0 chr12 152764 152838 -144129651 + MIR3 SINE MIR 89 165 -43 433 264 14 47 chr12 153256 153468 -144129021 - L1MC4a LINE L1 -1875 5933 5729 2797 189 49 5 chr12 153647 154240 -144128249 - L1M2c LINE L1 -6157 632 14 3340 138 5 0 chr12 154241 154814 -144127675 - Tigger1 DNA MER2_type -1236 1182 607 1971 116 14 7 chr12 155281 155574 -144126915 - AluSx SINE Alu -17 295 1 180 0 0 0 chr12 155983 156003 -144126486 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr12 157034 157058 -144125431 + AT_rich Low_complexity Low_complexity 1 24 0 1617 178 0 4 chr12 157094 157363 -144125126 - AluSx SINE Alu -44 268 1 255 320 5 104 chr12 157553 157658 -144124831 + L3 LINE CR1 668 742 -835 2075 98 11 0 chr12 157658 157959 -144124530 + AluSg SINE Alu 1 304 0 255 320 5 104 chr12 157959 158074 -144124415 + L3 LINE CR1 742 867 -710 1757 21 0 0 chr12 158095 158334 -144124155 - L1P LINE L1 -791 5355 5117 324 253 23 0 chr12 158358 158445 -144124044 + MIR SINE MIR 48 136 -126 308 291 91 94 chr12 158431 158750 -144123739 + L2 LINE L2 2914 3231 -41 * 368 386 55 15 chr12 158994 159320 -144123169 + L2 LINE L2 2439 2777 -537 194 307 27 13 chr12 159700 159775 -144122714 + L2 LINE L2 3175 3250 -22 289 299 35 0 chr12 160327 160414 -144122075 + MIR3 SINE MIR 98 187 -21 417 239 46 23 chr12 160513 160643 -144121846 - L2 LINE L2 -1 3271 3139 589 323 22 35 chr12 160668 160900 -144121589 - MIR SINE MIR -19 243 15 218 343 0 14 chr12 162012 162085 -144120404 - L2 LINE L2 -1 3271 3200 186 286 79 0 chr12 162317 162380 -144120109 - L2 LINE L2 -19 3253 3186 283 301 165 5 chr12 163284 163484 -144119005 - MIR SINE MIR -3 259 21 209 214 45 107 chr12 163849 163961 -144118528 + MIR SINE MIR 17 121 -87 455 344 18 12 chr12 164603 164766 -144117723 - L2 LINE L2 0 3313 3150 1184 144 5 26 chr12 165031 165226 -144117263 + AluSx SINE Alu 1 191 -121 2166 95 3 16 chr12 165263 165567 -144116922 + AluSx SINE Alu 1 300 -12 2352 235 152 3 chr12 165885 166451 -144116038 + MLT1E1 LTR MaLR 5 654 0 350 276 35 55 chr12 167842 168041 -144114448 - L1MC5 LINE L1 -54 7907 7713 258 105 0 0 chr12 168050 168088 -144114401 + (A)n Simple_repeat Simple_repeat 1 38 0 1519 171 0 38 chr12 168090 168383 -144114106 - AluJo SINE Alu -30 282 1 29 84 0 0 chr12 169105 169176 -144113313 + GC_rich Low_complexity Low_complexity 1 71 0 198 118 0 0 chr12 169496 169530 -144112959 + (GGA)n Simple_repeat Simple_repeat 2 35 0 259 265 265 0 chr12 170536 170638 -144111851 - L2 LINE L2 0 3313 3185 238 331 107 22 chr12 170639 170817 -144111672 - MIR SINE MIR -38 224 32 433 305 0 16 chr12 170888 171133 -144111356 - MER5C DNA MER1_type 0 324 25 207 374 49 8 chr12 171898 172021 -144110468 - L2 LINE L2 -19 3294 3167 189 312 48 91 chr12 172705 172891 -144109598 + MIR3 SINE MIR 30 207 -1 212 160 0 60 chr12 173087 173137 -144109352 + CT-rich Low_complexity Low_complexity 1 47 0 542 238 89 12 chr12 173722 173890 -144108599 + MIR3 SINE MIR 14 194 -14 369 0 0 0 chr12 174246 174287 -144108202 + (TG)n Simple_repeat Simple_repeat 1 41 0 1558 196 21 7 chr12 175261 175552 -144106937 - AluJo SINE Alu -17 295 1 277 239 230 9 chr12 175576 175689 -144106800 + MIR SINE MIR 117 254 -8 848 196 7 0 chr12 175690 175838 -144106651 - FRAM SINE Alu -8 168 20 1304 172 12 124 chr12 176764 177102 -144105387 + AluJo SINE Alu 12 311 -1 280 179 26 0 chr12 177102 177180 -144105309 + GA-rich Low_complexity Low_complexity 1 80 0 660 311 58 9 chr12 177727 177952 -144104537 - MIR SINE MIR -21 241 6 324 256 0 23 chr12 178037 178123 -144104366 - MIR3 SINE MIR -30 178 95 381 335 12 48 chr12 178394 178561 -144103928 - MIR SINE MIR -6 256 96 947 189 22 11 chr12 178614 178799 -144103690 + MER5A DNA MER1_type 1 187 -2 299 344 139 35 chr12 179968 180547 -144101942 - L2 LINE L2 0 3272 2545 771 279 165 0 chr12 180904 181309 -144101180 - L2 LINE L2 -1203 2111 1640 1055 326 67 41 chr12 181628 182566 -144099923 + L2 LINE L2 2313 3271 -1 205 325 50 50 chr12 182952 183072 -144099417 + MIR SINE MIR 114 233 -29 195 215 139 25 chr12 183197 183276 -144099213 + MIR SINE MIR 67 154 -108 184 214 18 71 chr12 183852 183908 -144098581 - L3 LINE CR1 -33 1544 1492 417 289 35 52 chr12 184271 184444 -144098045 - MER5B DNA MER1_type -8 170 1 323 324 11 28 chr12 185125 185307 -144097182 + CT-rich Low_complexity Low_complexity 2 180 0 313 341 29 0 chr12 186643 186781 -144095708 - MIR3 SINE MIR -15 193 52 528 253 66 11 chr12 188620 188802 -144093687 - HAL1 LINE L1 -10 2497 2306 768 275 48 7 chr12 188810 189083 -144093406 - L1ME3 LINE L1 0 6162 5879 1893 132 4 0 chr12 189111 189377 -144093112 - AluSx SINE Alu -45 267 1 253 212 9 80 chr12 189377 189480 -144093009 - HAL1 LINE L1 -197 2310 2214 573 289 180 3 chr12 189481 189848 -144092641 - HAL1 LINE L1 -353 2154 1723 3248 279 97 18 chr12 189861 191330 -144091159 - HAL1 LINE L1 -845 1662 78 236 229 0 0 chr12 192585 192633 -144089856 - L2 LINE L2 -4 3309 3262 194 389 56 0 chr12 192686 192794 -144089695 + L3b LINE CR1 1340 1453 -130 323 167 23 92 chr12 193619 193793 -144088696 + C-rich Low_complexity Low_complexity 2 163 0 319 269 39 48 chr12 194516 194620 -144087869 - L2 LINE L2 -4 3268 3166 249 339 179 9 chr12 194610 194834 -144087655 + L2 LINE L2 2476 2737 -577 * 298 283 93 78 chr12 194994 195199 -144087290 + L2 LINE L2 3100 3307 -6 499 310 66 68 chr12 195223 195697 -144086792 - L2 LINE L2 -108 3205 2713 401 329 77 31 chr12 196690 196912 -144085577 - L1MC4 LINE L1 -382 7660 7429 268 299 210 6 chr12 197208 197365 -144085124 - MIR SINE MIR -6 256 68 212 275 0 66 chr12 197922 198013 -144084476 + GA-rich Low_complexity Low_complexity 1 85 0 791 175 36 0 chr12 198016 198153 -144084336 + FLAM_C SINE Alu 1 142 -1 340 320 176 0 chr12 198180 198333 -144084156 - MIR SINE MIR -76 186 7 632 353 95 16 chr12 198487 198804 -144083685 + L3b LINE CR1 1147 1488 -95 323 68 85 0 chr12 198926 198985 -144083504 + MADE1 DNA Mariner 3 66 -14 518 282 98 20 chr12 198997 199200 -144083289 - MIR SINE MIR -26 236 5 263 225 119 0 chr12 199217 199321 -144083168 - MIR SINE MIR -62 146 25 213 309 37 12 chr12 201045 201126 -144081363 - MIR SINE MIR 0 262 180 289 200 13 40 chr12 201330 201405 -144081084 - MIR SINE MIR -139 123 51 180 0 0 0 chr12 202837 202857 -144079632 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 190 226 132 19 chr12 204751 204804 -144077685 - MIR SINE MIR -63 145 87 192 77 0 0 chr12 208525 208551 -144073938 + (CCTG)n Simple_repeat Simple_repeat 4 29 0 207 282 14 42 chr12 209568 209639 -144072850 - L2 LINE L2 -8 3264 3196 195 316 32 53 chr12 210322 210417 -144072072 - L3b LINE CR1 -248 1335 1243 212 349 0 0 chr12 210541 210604 -144071885 - L2 LINE L2 -34 3279 3217 183 246 116 0 chr12 210669 210738 -144071751 - L2 LINE L2 -216 3097 3021 1266 201 3 88 chr12 211304 211520 -144070969 - AluJo SINE Alu -8 304 124 1600 114 0 0 chr12 211520 211747 -144070742 + AluSg/x SINE Alu 85 311 -1 1266 201 3 88 chr12 211747 211859 -144070630 - AluJo SINE Alu -188 124 4 653 106 0 11 chr12 211861 211955 -144070534 - AluJo SINE Alu -176 136 44 699 296 55 17 chr12 213291 213710 -144068779 + L1M4 LINE L1 3070 3504 -2642 1651 180 3 3 chr12 213713 214002 -144068487 + AluJb SINE Alu 21 309 -3 914 143 0 0 chr12 214003 214136 -144068353 + AluJb SINE Alu 1 133 -179 403 119 0 0 chr12 214144 214203 -144068286 + Alu SINE Alu 246 304 -7 1170 292 77 30 chr12 214261 214761 -144067728 + L1M4 LINE L1 3526 4070 -2076 2002 112 10 36 chr12 214761 214896 -144067593 + AluSx SINE Alu 1 138 -174 2541 40 0 0 chr12 214896 215195 -144067294 + AluY SINE Alu 10 308 -3 2002 112 10 36 chr12 215195 215364 -144067125 + AluSx SINE Alu 138 297 -15 1170 292 77 30 chr12 215364 215569 -144066920 + L1M4 LINE L1 4070 4264 -1882 849 245 56 25 chr12 216803 217089 -144065400 - MLT1F LTR MaLR -8 534 240 3915 142 49 59 chr12 217641 219042 -144063447 - pTR5 LTR ERV1 0 2438 742 262 286 0 13 chr12 219078 219155 -144063334 + (CA)n Simple_repeat Simple_repeat 2 77 0 373 309 25 56 chr12 220531 220693 -144061796 + MIR3 SINE MIR 3 159 -49 248 246 184 9 chr12 220711 220825 -144061664 + MER117 DNA MER1_type 55 188 -9 181 260 14 41 chr12 221695 221768 -144060721 + L2 LINE L2 3201 3271 -1 502 232 271 34 chr12 221821 221998 -144060491 + MIR SINE MIR 44 262 0 180 0 0 0 chr12 222082 222102 -144060387 + (TGG)n Simple_repeat Simple_repeat 1 20 0 534 349 28 8 chr12 222125 222380 -144060109 + MLT1L LTR MaLR 339 598 -17 181 262 119 12 chr12 224420 224504 -144057985 - L3 LINE CR1 -3 1574 1482 281 277 43 11 chr12 224874 224968 -144057521 + MIR SINE MIR 34 130 -132 391 311 155 24 chr12 225131 225337 -144057152 + L3 LINE CR1 1333 1565 -12 656 287 124 13 chr12 226070 226384 -144056105 + MLT1K LTR MaLR 240 588 0 1392 24 0 0 chr12 227463 227627 -144054862 + (TCCA)n Simple_repeat Simple_repeat 4 167 0 318 280 21 44 chr12 227942 228163 -144054326 + GA-rich Low_complexity Low_complexity 1 215 0 957 168 0 24 chr12 228837 229004 -144053485 + FRAM SINE Alu 2 164 -2 350 305 0 38 chr12 229020 229125 -144053364 + HAL1b LINE L1 1245 1345 -3 230 174 0 22 chr12 229557 229603 -144052886 + GA-rich Low_complexity Low_complexity 3 47 0 349 149 19 93 chr12 229646 229753 -144052736 - L1MA5 LINE L1 0 6300 6202 185 309 128 43 chr12 230190 230284 -144052205 - L3 LINE CR1 -72 1505 1404 314 370 45 19 chr12 230298 230452 -144052037 + L1ME4a LINE L1 5852 6009 -112 2528 40 7 0 chr12 230522 230825 -144051664 - AluY SINE Alu -5 306 2 225 286 0 0 chr12 230874 230923 -144051566 - L3 LINE CR1 -193 1384 1336 443 293 14 7 chr12 231765 231912 -144050577 + MER63A DNA MER1_type 63 210 0 435 371 38 24 chr12 232695 232908 -144049581 + L2 LINE L2 3098 3313 0 1611 131 35 46 chr12 233473 233756 -144048733 - AluJb SINE Alu 0 312 33 21 36 0 0 chr12 233903 233931 -144048558 + GC_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr12 234209 234243 -144048246 + GC_rich Low_complexity Low_complexity 1 34 0 559 257 115 40 chr12 235814 236040 -144046449 - MIR SINE MIR -15 247 5 494 295 81 59 chr12 236115 236489 -144046000 - L1ME4a LINE L1 -133 5988 5601 2529 182 25 2 chr12 236489 236934 -144045555 - L1MB3 LINE L1 -10 6173 5719 494 295 81 59 chr12 236934 237016 -144045473 - L1ME4a LINE L1 -520 5601 5522 24 0 0 0 chr12 237984 238008 -144044481 + AT_rich Low_complexity Low_complexity 1 24 0 1102 229 15 4 chr12 238996 239258 -144043231 + L1MB8 LINE L1 5874 6138 -40 685 312 113 27 chr12 239325 239890 -144042599 + L2 LINE L2 2700 3311 -2 237 282 141 0 chr12 239966 240037 -144042452 - MIR SINE MIR -65 197 117 209 373 13 0 chr12 240035 240110 -144042379 - MIR3 SINE MIR -130 78 3 * 331 307 81 32 chr12 240577 240763 -144041726 - MIR3 SINE MIR -56 206 12 297 269 81 62 chr12 242226 242386 -144040103 - MIR SINE MIR -1 261 99 307 261 49 12 chr12 242462 242588 -144039901 + MIR SINE MIR 64 200 -62 195 42 0 0 chr12 242936 242960 -144039529 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 347 354 111 0 chr12 243065 243209 -144039280 + L3b LINE CR1 1321 1480 -103 243 291 0 0 chr12 244850 244905 -144037584 + C-rich Low_complexity Low_complexity 5 59 0 659 262 38 29 chr12 247303 247513 -144034976 - MIR SINE MIR -50 212 1 1326 90 4 0 chr12 247621 247855 -144034634 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 2422 51 0 3 chr12 248072 248368 -144034121 + AluY SINE Alu 1 295 -16 486 207 83 0 chr12 248577 248698 -144033791 - MIR SINE MIR -86 176 46 186 43 0 0 chr12 249120 249143 -144033346 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 713 238 117 26 chr12 252401 252632 -144029857 + MIR SINE MIR 9 260 -2 329 344 4 19 chr12 252667 252791 -144029698 + MIR SINE MIR 39 149 -59 234 378 0 0 chr12 253216 253298 -144029191 + L3b LINE CR1 1330 1411 -172 21 0 0 0 chr12 253833 253854 -144028635 + AT_rich Low_complexity Low_complexity 1 21 0 2098 123 0 13 chr12 255786 256094 -144026395 + AluSx SINE Alu 1 304 -8 229 213 5 190 chr12 256399 256615 -144025874 + L1MC4a LINE L1 5881 6056 -1752 539 217 109 22 chr12 257544 257682 -144024807 - MER6 DNA MER2_type 0 865 -5 203 272 48 97 chr12 259216 259319 -144023170 + MER5A DNA MER1_type 57 165 -24 641 278 20 7 chr12 260792 260943 -144021546 + MIR SINE MIR 2 154 -108 464 314 149 0 chr12 261093 261281 -144021208 + MIR SINE MIR 41 256 -6 244 204 9 157 chr12 262196 262304 -144020185 + L2 LINE L2 3220 3311 -2 435 288 108 0 chr12 262427 262566 -144019923 + MIR SINE MIR 104 257 -5 1579 97 4 25 chr12 264272 264510 -144017979 + MER41B LTR ERV1 1 233 -402 2656 108 18 13 chr12 264611 264890 -144017599 + MER41B LTR ERV1 236 520 -115 2113 106 0 0 chr12 264890 265236 -144017253 - AluSx SINE Alu 0 346 1 2656 108 18 13 chr12 265236 265353 -144017136 + MER41B LTR ERV1 520 635 0 6576 54 143 70 chr12 265792 266884 -144015605 + MER11A LTR ERVK 1 1266 0 219 125 175 0 chr12 266961 267001 -144015488 + L2 LINE L2 3267 3313 0 390 290 100 40 chr12 268794 268994 -144013495 + MIR SINE MIR 10 221 -41 500 264 156 27 chr12 269180 269514 -144012975 + L2 LINE L2 2497 2873 -441 954 267 83 55 chr12 269734 270191 -144012298 + L2 LINE L2 2843 3312 -1 1730 166 0 3 chr12 270631 270921 -144011568 - AluSx SINE Alu -21 291 3 423 218 99 14 chr12 270951 271093 -144011396 - L2 LINE L2 -1 3312 3159 2289 94 0 0 chr12 271442 271750 -144010739 + AluSg1 SINE Alu 1 308 -1 524 182 91 16 chr12 271884 272005 -144010484 - MER3 DNA MER1_type -4 205 76 229 148 37 111 chr12 272056 272110 -144010379 + MER3 DNA MER1_type 159 208 -1 * 451 174 43 65 chr12 272110 272154 -144010335 - MER3 DNA MER1_type -167 42 1 861 229 29 14 chr12 272252 272559 -144009930 + MER7A DNA MER2_type 1 337 0 569 129 11 11 chr12 272578 272671 -144009818 + Tigger2a DNA MER2_type 1 93 -341 374 243 0 0 chr12 273213 273287 -144009202 + FRAM/FAM SINE Alu 8 81 -85 243 163 20 0 chr12 273305 273354 -144009135 + L1MD3 LINE L1 7933 7982 -13 2085 99 0 17 chr12 273431 273733 -144008756 - AluSq SINE Alu -16 297 1 1871 166 78 24 chr12 274658 274825 -144007664 + MSTD LTR MaLR 1 158 -238 1885 131 3 17 chr12 274825 275122 -144007367 + AluJb SINE Alu 1 293 -19 1871 166 78 24 chr12 275122 275327 -144007162 + MSTD LTR MaLR 158 393 -3 5530 233 70 43 chr12 275445 275818 -144006671 + L1ME2 LINE L1 338 699 -5697 2199 116 0 0 chr12 275818 276121 -144006368 + AluSg SINE Alu 1 303 -7 1984 94 0 57 chr12 276121 276254 -144006235 + AluSc SINE Alu 1 140 -165 2247 78 0 3 chr12 276254 276547 -144005942 + AluY SINE Alu 1 292 -19 243 0 0 0 chr12 276551 276578 -144005911 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1984 94 0 57 chr12 276578 276761 -144005728 + AluSc SINE Alu 143 305 0 5530 233 70 43 chr12 276761 277145 -144005344 + L1ME2 LINE L1 699 1071 -5325 2280 117 0 0 chr12 277145 277454 -144005035 + AluSx SINE Alu 2 310 -2 5530 233 70 43 chr12 277454 278713 -144003776 + L1ME2 LINE L1 1071 2413 -3983 813 77 15 15 chr12 278713 278843 -144003646 + AluY SINE Alu 175 304 -7 9252 197 56 77 chr12 278844 281325 -144001164 + L1ME2 LINE L1 2362 4895 -1320 2170 66 0 0 chr12 281325 281596 -144000893 + AluY SINE Alu 33 303 -8 9252 197 56 77 chr12 281596 282091 -144000398 + L1ME2 LINE L1 4895 5272 -943 1659 146 0 71 chr12 282091 282413 -144000076 + AluJb SINE Alu 3 301 -11 9252 197 56 77 chr12 282413 282515 -143999974 + L1ME2 LINE L1 5272 5375 -840 315 273 108 0 chr12 282498 282637 -143999852 + L1ME2 LINE L1 5879 6032 -201 * 677 216 34 91 chr12 282658 282922 -143999567 + L1ME1 LINE L1 5899 6147 -19 1391 233 166 17 chr12 284761 285280 -143997209 + L2 LINE L2 1793 2388 -926 911 120 0 0 chr12 285283 285408 -143997081 + AluSq/x SINE Alu 1 125 -188 394 219 0 12 chr12 285434 285516 -143996973 + L2 LINE L2 2376 2456 -858 310 259 24 12 chr12 285487 285572 -143996917 - L2 LINE L2 -694 2620 2535 * 231 240 20 0 chr12 285696 285746 -143996743 - L2 LINE L2 -824 2490 2440 * 1119 236 97 95 chr12 285722 285834 -143996655 + L2 LINE L2 2609 2719 -594 2058 100 0 0 chr12 285834 286113 -143996376 + AluSx SINE Alu 3 281 -31 1119 236 97 95 chr12 286113 286722 -143995767 + L2 LINE L2 2719 3311 -2 728 281 41 27 chr12 289849 290070 -143992419 - MIR SINE MIR -38 224 1 241 304 107 14 chr12 290070 290182 -143992307 + MIR3 SINE MIR 79 204 -4 571 299 103 11 chr12 290889 291170 -143991319 + L1ME4a LINE L1 5610 5916 -205 676 264 83 25 chr12 291612 291840 -143990649 - MIR SINE MIR -8 254 5 2337 69 7 0 chr12 292063 292366 -143990123 + AluSq SINE Alu 1 305 -8 476 301 46 36 chr12 292641 292837 -143989652 + MIR SINE MIR 7 204 -58 216 97 0 0 chr12 293361 293392 -143989097 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr12 293913 293935 -143988554 + AT_rich Low_complexity Low_complexity 1 22 0 184 298 53 43 chr12 294144 294238 -143988251 + MIR SINE MIR 1 95 -167 3649 189 36 69 chr12 295866 296042 -143986447 + L1MC4a LINE L1 6888 7068 -740 664 178 85 8 chr12 296042 296160 -143986329 + FLAM_A SINE Alu 1 127 -6 3649 189 36 69 chr12 296160 296934 -143985555 + L1MC4a LINE L1 7068 7806 -2 1509 187 11 14 chr12 297129 297452 -143985037 - AluJo SINE Alu 0 322 1 725 312 16 28 chr12 297516 297766 -143984723 - MIR SINE MIR -10 252 6 2442 208 110 4 chr12 298577 299131 -143983358 - MER90 LTR ERV1 -1 613 1 617 250 0 59 chr12 299445 299597 -143982892 - MER5B DNA MER1_type -35 143 1 522 303 113 5 chr12 299606 299827 -143982662 - L3b LINE CR1 -235 1348 1104 482 365 6 6 chr12 300136 300303 -143982186 + MIR3 SINE MIR 20 186 -22 1843 82 49 98 chr12 300626 300954 -143981535 - AluSq SINE Alu -1 312 1 478 279 71 22 chr12 301028 301228 -143981261 - MIR SINE MIR -39 223 7 772 231 17 12 chr12 301228 301401 -143981088 + MER69A DNA AcHobo 4 177 0 290 131 262 0 chr12 303407 303468 -143979021 - MADE1 DNA Mariner -2 78 2 2080 211 117 20 chr12 303542 304083 -143978406 + MLT1E LTR MaLR 1 593 0 425 311 147 3 chr12 304226 304512 -143977977 + L1ME4a LINE L1 4965 5291 -855 388 236 145 37 chr12 304513 304755 -143977734 + L1ME4a LINE L1 5785 6052 -69 645 241 101 18 chr12 305327 305555 -143976934 + L1MB8 LINE L1 5932 6178 0 1803 113 0 8 chr12 305626 305873 -143976616 - AluSx SINE Alu -21 291 47 276 352 124 48 chr12 306009 306259 -143976230 + L3 LINE CR1 1099 1367 -210 955 204 11 0 chr12 306327 306513 -143975976 - MER5A DNA MER1_type -1 188 1 287 343 57 0 chr12 306732 306837 -143975652 - L2 LINE L2 -3 3310 3200 211 239 43 0 chr12 306912 306958 -143975531 - L2 LINE L2 -272 3041 2994 1208 123 16 0 chr12 307467 307654 -143974835 + L1PB1 LINE L1 5957 6146 -5 247 347 245 18 chr12 307824 309263 -143973226 - L2 LINE L2 -1231 2083 319 226 327 26 44 chr12 309912 310025 -143972464 + L3 LINE CR1 1449 1559 -18 422 230 120 0 chr12 312612 312712 -143969777 - FLAM_A SINE Alu -30 112 1 180 125 0 0 chr12 314636 314668 -143967821 + (TA)n Simple_repeat Simple_repeat 2 33 0 421 295 84 12 chr12 317339 317505 -143964984 + MIR SINE MIR 64 241 -21 422 274 85 24 chr12 317584 317748 -143964741 + MER5A DNA MER1_type 1 174 -15 599 202 9 0 chr12 319210 319319 -143963170 + MER81 DNA DNA 5 114 0 21 0 0 0 chr12 319623 319644 -143962845 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr12 319776 319816 -143962673 + AT_rich Low_complexity Low_complexity 1 40 0 1183 143 0 0 chr12 319979 320154 -143962335 + FRAM SINE Alu 1 167 -9 279 79 0 0 chr12 320311 320349 -143962140 + (T)n Simple_repeat Simple_repeat 1 38 0 859 186 17 29 chr12 320366 320538 -143961951 - FAM SINE Alu -5 170 1 587 311 33 6 chr12 321809 321989 -143960500 + MIR3 SINE MIR 3 187 -21 2196 105 0 10 chr12 322320 322624 -143959865 - AluSq SINE Alu -12 301 1 1394 172 22 0 chr12 323640 323907 -143958582 + L1MB4 LINE L1 5908 6180 0 2233 103 0 0 chr12 323915 324207 -143958282 + AluSx SINE Alu 1 292 -20 208 278 0 19 chr12 324882 324936 -143957553 + MIR SINE MIR 88 140 -122 278 251 50 112 chr12 325156 325335 -143957154 + MIR SINE MIR 36 203 -59 467 203 11 16 chr12 325647 325829 -143956660 + GA-rich Low_complexity Low_complexity 1 181 0 2194 102 0 10 chr12 326455 326758 -143955731 + AluSq SINE Alu 1 300 -13 430 319 112 11 chr12 327070 327258 -143955231 + L3 LINE CR1 1370 1576 -1 768 244 45 61 chr12 327796 328319 -143954170 + PABL_B LTR ERV1 1 667 0 30489 87 12 9 chr12 328405 334082 -143948407 + L1PA7 LINE L1 748 6467 -2 531 174 83 38 chr12 334280 334412 -143948077 + MER6B DNA MER2_type 1 138 -72 180 0 0 0 chr12 334865 334885 -143947604 + (T)n Simple_repeat Simple_repeat 1 20 0 235 135 0 0 chr12 334920 334957 -143947532 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 23 54 0 0 chr12 335680 335717 -143946772 + AT_rich Low_complexity Low_complexity 1 37 0 2065 134 10 13 chr12 336388 336693 -143945796 - AluJb SINE Alu -8 304 1 2158 127 0 0 chr12 336879 337179 -143945310 + AluSx SINE Alu 1 300 -12 449 292 120 23 chr12 338662 338878 -143943611 + MIR SINE MIR 20 256 -6 378 304 113 16 chr12 339383 339577 -143942912 + L1ME LINE L1 5552 5764 -357 527 165 11 0 chr12 339578 339669 -143942820 + MER6 DNA MER2_type 1 92 -773 * 1460 136 54 7 chr12 339661 339940 -143942549 + MER6 DNA MER2_type 574 865 0 887 273 23 19 chr12 340441 340701 -143941788 - MIR SINE MIR 0 262 2 1836 152 3 13 chr12 340767 341069 -143941420 + AluJb SINE Alu 1 299 -13 340 163 98 11 chr12 341672 341764 -143940725 - LTR37A LTR ERV1 -54 372 273 918 87 0 0 chr12 341780 341895 -143940594 + AluSq/x SINE Alu 1 115 -197 2279 99 0 0 chr12 342170 342464 -143940025 + AluSx SINE Alu 1 294 -18 229 175 0 0 chr12 342923 342963 -143939526 + HAL1b LINE L1 859 898 -450 1042 194 142 36 chr12 343046 343376 -143939113 - Tigger5 DNA MER2_type -1 2322 1 286 186 69 98 chr12 343694 343796 -143938693 - MIR SINE MIR -56 206 108 24 0 0 0 chr12 343814 343838 -143938651 + AT_rich Low_complexity Low_complexity 1 24 0 239 336 69 8 chr12 343838 343969 -143938520 - MIR SINE MIR -122 140 2 321 241 51 0 chr12 344543 344622 -143937867 - L2 LINE L2 -31 3282 3200 2033 108 28 0 chr12 344626 344913 -143937576 - AluY SINE Alu -16 295 1 433 334 36 81 chr12 345084 345490 -143936999 - L2 LINE L2 -229 3043 2652 316 237 11 22 chr12 345600 345710 -143936779 + L1M2 LINE L1 1574 2060 -4323 1774 168 0 10 chr12 345710 346002 -143936487 + AluSx SINE Alu 1 289 -23 412 329 90 40 chr12 346106 346550 -143935939 - L2 LINE L2 -814 2500 2035 562 270 85 10 chr12 346629 346829 -143935660 + L2 LINE L2 3084 3298 -15 229 329 183 25 chr12 347294 347441 -143935048 + MIR3 SINE MIR 1 166 -74 1420 310 176 19 chr12 349086 349892 -143932597 - L2 LINE L2 -1 3312 2633 1709 171 0 11 chr12 349892 350200 -143932289 + AluJb SINE Alu 6 310 0 1420 310 176 19 chr12 350200 350631 -143931858 - L2 LINE L2 -680 2633 1876 2221 105 3 3 chr12 350633 350939 -143931550 + AluSx SINE Alu 1 306 -6 1195 263 60 75 chr12 352231 352816 -143929673 - L2 LINE L2 0 3313 2738 306 87 0 0 chr12 353629 353675 -143928814 + (A)n Simple_repeat Simple_repeat 1 46 0 1485 192 45 14 chr12 354443 354729 -143927760 + AluJo SINE Alu 1 295 -17 2297 122 0 0 chr12 355009 355313 -143927176 + AluSx SINE Alu 1 304 -8 1865 154 33 3 chr12 355821 356120 -143926369 + AluSx SINE Alu 3 310 -2 2150 130 0 0 chr12 356150 356450 -143926039 + AluSx SINE Alu 1 300 -12 2545 60 0 13 chr12 356998 357313 -143925176 + AluY SINE Alu 1 311 0 23 54 0 0 chr12 357796 357833 -143924656 + AT_rich Low_complexity Low_complexity 1 37 0 2110 130 7 0 chr12 357846 358145 -143924344 + AluSx SINE Alu 1 301 -11 1717 183 0 10 chr12 358149 358439 -143924050 + AluJo SINE Alu 1 287 -25 831 221 6 0 chr12 358474 358632 -143923857 + L1MA10 LINE L1 6175 6333 -1 24 32 0 0 chr12 359796 359827 -143922662 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr12 360473 360505 -143921984 + (TG)n Simple_repeat Simple_repeat 2 33 0 355 91 0 232 chr12 361700 361799 -143920690 + MADE1 DNA Mariner 3 78 -2 193 122 0 61 chr12 361907 361956 -143920533 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 21 0 0 0 chr12 362384 362405 -143920084 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 362860 362881 -143919608 + AT_rich Low_complexity Low_complexity 1 21 0 2016 156 0 0 chr12 363555 363879 -143918610 + AluJo SINE Alu 1 324 0 26 0 0 0 chr12 364920 364946 -143917543 + AT_rich Low_complexity Low_complexity 1 26 0 241 172 58 23 chr12 365493 365580 -143916909 + L1MEd LINE L1 55 144 -5975 886 171 19 6 chr12 365763 365921 -143916568 + Charlie1b DNA MER1_type 52 211 -312 273 266 95 25 chr12 366015 366173 -143916316 + L1MEd LINE L1 927 1095 -5024 2468 84 0 3 chr12 366178 366487 -143916002 + AluSq SINE Alu 1 308 -5 2027 139 10 0 chr12 366495 366796 -143915693 + AluJb SINE Alu 1 304 -8 1734 135 24 0 chr12 367016 367268 -143915221 + AluSx SINE Alu 40 297 -15 2177 135 154 5 chr12 367371 367742 -143914747 + MSTA LTR MaLR 1 426 -2 2309 101 10 0 chr12 368065 368361 -143914128 - AluSq SINE Alu -14 299 1 281 160 27 40 chr12 368370 368445 -143914044 - L1MC5 LINE L1 -35 7926 7853 2529 185 70 39 chr12 368499 369044 -143913445 + MER68 LTR ERV1 1 562 0 2340 78 7 0 chr12 369319 369614 -143912875 + AluSp SINE Alu 4 300 -13 957 229 97 64 chr12 370174 370294 -143912195 + MLT1F LTR MaLR 10 125 -417 1967 149 0 10 chr12 370294 370596 -143911893 - AluJb SINE Alu -13 299 1 957 229 97 64 chr12 370596 370832 -143911657 + MLT1F LTR MaLR 125 439 -103 2366 95 0 3 chr12 370832 371138 -143911351 + AluSg SINE Alu 1 305 -5 957 229 97 64 chr12 371138 371239 -143911250 + MLT1F LTR MaLR 439 535 -7 916 237 62 16 chr12 371940 372038 -143910451 + L1M1 LINE L1 3384 3476 -4089 2018 160 3 0 chr12 372038 372345 -143910144 + AluSg SINE Alu 1 308 -2 916 237 62 16 chr12 372345 372605 -143909884 + L1M1 LINE L1 3476 3758 -3807 2250 100 0 7 chr12 372879 373180 -143909309 - AluSx SINE Alu -13 299 1 23 0 0 0 chr12 373189 373212 -143909277 + AT_rich Low_complexity Low_complexity 1 23 0 38608 80 12 8 chr12 373215 379337 -143903152 + L1PA6 LINE L1 2 6152 -2 2215 114 3 0 chr12 379440 379738 -143902751 - AluSq SINE Alu -14 299 1 2476 68 0 0 chr12 379749 380042 -143902447 - AluSg1 SINE Alu -12 297 5 476 252 148 0 chr12 380125 380240 -143902249 - FLAM_C SINE Alu 0 133 2 2225 95 10 0 chr12 380266 380561 -143901928 + AluSp SINE Alu 1 298 -15 2161 106 31 0 chr12 380573 380865 -143901624 + AluSx SINE Alu 1 301 -11 2596 59 0 0 chr12 381589 381909 -143900580 - L1PA7 LINE L1 -111 6043 5724 1013 118 0 0 chr12 382105 382240 -143900249 + AluSq/x SINE Alu 1 135 -178 2438 97 0 0 chr12 382240 382549 -143899940 + AluSx SINE Alu 1 309 -3 1520 168 60 3 chr12 383481 383766 -143898723 + AluJb SINE Alu 1 301 -11 2306 95 0 3 chr12 384059 384355 -143898134 + AluSc SINE Alu 1 295 -14 25 75 0 0 chr12 384656 384709 -143897780 + AT_rich Low_complexity Low_complexity 1 53 0 2343 78 10 0 chr12 384905 385198 -143897291 + AluY SINE Alu 1 296 -15 561 254 101 32 chr12 385694 385911 -143896578 - MIR SINE MIR 0 262 31 1634 155 18 14 chr12 387417 387694 -143894795 + AluJb SINE Alu 1 278 -34 1169 189 5 5 chr12 387722 387939 -143894550 + AluJo SINE Alu 85 301 -11 2499 85 0 0 chr12 387966 388273 -143894216 + AluSg SINE Alu 1 307 -3 394 306 107 40 chr12 388320 388572 -143893917 + MLT1L LTR MaLR 343 611 -4 2000 143 3 16 chr12 389109 389423 -143893066 + AluSg SINE Alu 1 310 0 671 189 56 103 chr12 389548 389781 -143892708 + L1MC4a LINE L1 6526 6747 -1061 186 270 16 48 chr12 389800 389863 -143892626 - L2 LINE L2 -799 2515 2455 1653 172 35 0 chr12 389888 390173 -143892316 + AluJb SINE Alu 1 295 -17 518 167 9 0 chr12 390187 390295 -143892194 + GA-rich Low_complexity Low_complexity 1 109 0 2016 134 10 3 chr12 390412 390702 -143891787 + AluSx SINE Alu 1 292 -20 344 331 165 36 chr12 390706 391465 -143891024 - L2 LINE L2 -1073 2241 1385 2379 85 0 0 chr12 391617 391912 -143890577 - AluY SINE Alu -16 295 1 521 199 38 61 chr12 393233 393364 -143889125 + FLAM_A SINE Alu 1 128 -5 3894 196 73 37 chr12 393616 394608 -143887881 + L1ME1 LINE L1 4550 5505 -661 2204 110 0 17 chr12 394608 394909 -143887580 + AluSx SINE Alu 1 296 -16 3894 196 73 37 chr12 394909 394922 -143887567 + L1ME1 LINE L1 5505 5516 -650 2399 72 16 0 chr12 394922 395227 -143887262 + AluY SINE Alu 1 310 -1 3894 196 73 37 chr12 395227 395479 -143887010 + L1ME1 LINE L1 5516 5757 -409 1920 150 0 3 chr12 395479 395772 -143886717 - AluJb SINE Alu -20 292 1 3894 196 73 37 chr12 395772 396083 -143886406 + L1ME1 LINE L1 5757 6161 -5 244 195 11 46 chr12 396847 396934 -143885555 + A-rich Low_complexity Low_complexity 4 87 0 1882 145 76 0 chr12 397246 397563 -143884926 + MER7A DNA MER2_type 1 339 -7 1513 153 16 70 chr12 397687 397833 -143884656 + AluJo SINE Alu 1 123 -189 1838 160 0 17 chr12 397833 398133 -143884356 + AluSx SINE Alu 1 295 -17 1513 153 16 70 chr12 398133 398299 -143884190 + AluJo SINE Alu 123 296 -16 1842 187 58 7 chr12 398302 398764 -143883725 + L1MB4 LINE L1 5594 6132 -48 492 197 50 131 chr12 398806 398868 -143883621 + MIR SINE MIR 29 94 -168 2072 109 13 3 chr12 398868 399170 -143883319 + AluSx SINE Alu 1 305 -7 492 197 50 131 chr12 399170 399305 -143883184 + MIR SINE MIR 94 210 -52 997 264 96 84 chr12 399715 400203 -143882286 - L2 LINE L2 -5 3308 2815 2195 123 0 7 chr12 400529 400838 -143881651 + AluSx SINE Alu 1 307 -5 37724 58 10 3 chr12 401031 407137 -143875352 - L1PA5 LINE L1 0 6154 11 502 228 228 0 chr12 407460 407618 -143874871 + HAL1 LINE L1 271 464 -2043 2097 239 113 16 chr12 407653 408394 -143874095 + HAL1 LINE L1 1185 1997 -510 21 36 0 0 chr12 408402 408430 -143874059 + AT_rich Low_complexity Low_complexity 1 28 0 795 267 71 8 chr12 408499 408694 -143873795 + HAL1 LINE L1 2253 2467 -40 1579 169 38 28 chr12 408694 408984 -143873505 - AluJo SINE Alu -19 293 1 795 267 71 8 chr12 408984 409028 -143873461 + HAL1 LINE L1 2467 2507 0 2458 70 0 3 chr12 409095 409395 -143873094 + AluY SINE Alu 1 299 -12 862 199 45 30 chr12 409764 409965 -143872524 + L1ME3 LINE L1 5959 6162 0 196 241 0 37 chr12 410336 410390 -143872099 + L3b LINE CR1 1532 1583 0 1924 131 31 3 chr12 410405 410696 -143871793 + AluSx SINE Alu 1 299 -13 2028 134 0 23 chr12 410852 411151 -143871338 + AluSx SINE Alu 1 292 -20 23 65 0 16 chr12 411190 411222 -143871267 + AT_rich Low_complexity Low_complexity 1 33 -28 1944 122 3 40 chr12 411222 411406 -143871083 - AluSq SINE Alu -21 292 122 2371 91 3 10 chr12 411406 411713 -143870776 - AluSp SINE Alu -8 305 1 1944 122 3 40 chr12 411713 411831 -143870658 - AluSq SINE Alu -191 122 1 23 65 0 16 chr12 411831 411860 -143870629 + AT_rich Low_complexity Low_complexity 33 61 0 1845 154 0 14 chr12 412236 412522 -143869967 - AluJo SINE Alu -22 290 9 1597 119 5 0 chr12 412569 412787 -143869702 + AluSp SINE Alu 1 219 -94 829 100 0 0 chr12 412787 412897 -143869592 + AluSp/q SINE Alu 188 297 -16 28 61 0 0 chr12 412921 412970 -143869519 + AT_rich Low_complexity Low_complexity 1 49 0 2085 115 3 26 chr12 413064 413369 -143869120 + AluSg SINE Alu 1 298 -12 1993 155 0 10 chr12 413632 413936 -143868553 - AluJb SINE Alu -11 301 1 23 33 0 0 chr12 414061 414091 -143868398 + AT_rich Low_complexity Low_complexity 1 30 0 1311 88 0 0 chr12 414174 414334 -143868155 - AluSp SINE Alu -19 294 135 1394 151 138 30 chr12 414633 414937 -143867552 + MER1B DNA MER1_type 1 337 0 2307 75 31 0 chr12 415327 415620 -143866869 + AluSx SINE Alu 1 302 -10 25 102 0 0 chr12 415799 415887 -143866602 + AT_rich Low_complexity Low_complexity 1 88 0 2588 120 31 2 chr12 416567 416984 -143865505 - Tigger4(Zombi) DNA MER2_type 0 2731 2303 862 159 0 0 chr12 416985 417117 -143865372 + FLAM_C SINE Alu 2 133 0 287 150 0 67 chr12 417125 417185 -143865304 - Tigger4(Zombi) DNA MER2_type -2675 56 1 257 288 194 12 chr12 418392 418552 -143863937 - MER5A DNA MER1_type 0 189 1 240 143 0 0 chr12 419968 420010 -143862479 + (CGAGG)n Simple_repeat Simple_repeat 4 45 0 182 297 94 0 chr12 420482 420546 -143861943 + L2 LINE L2 2380 2449 -865 1572 183 34 10 chr12 420900 421156 -143861333 + MLT2D LTR ERVL 113 378 -36 225 0 0 0 chr12 421156 421181 -143861308 + (CA)n Simple_repeat Simple_repeat 2 26 0 1572 183 34 10 chr12 421181 421219 -143861270 + MLT2D LTR ERVL 378 414 0 920 255 91 25 chr12 421223 421543 -143860946 - MLT1H LTR MaLR -182 413 45 2257 104 0 10 chr12 421591 421889 -143860600 + AluSq SINE Alu 3 297 -16 5225 166 121 35 chr12 422825 422881 -143859608 - Charlie1a DNA MER1_type -1306 1455 1405 2311 95 0 3 chr12 422881 423177 -143859312 + AluSx SINE Alu 1 295 -17 5225 166 121 35 chr12 423177 423525 -143858964 - Charlie1a DNA MER1_type -1356 1405 1088 1598 152 47 34 chr12 423525 423822 -143858667 - AluJo SINE Alu -1 311 11 5225 166 121 35 chr12 423822 423957 -143858532 - Charlie1a DNA MER1_type -1673 1088 966 2257 105 3 0 chr12 423957 424251 -143858238 - AluSx SINE Alu -17 295 1 5225 166 121 35 chr12 424251 424969 -143857520 - Charlie1a DNA MER1_type -1795 966 88 532 192 60 60 chr12 425242 425424 -143857065 - L2 LINE L2 0 3313 3132 1652 192 0 38 chr12 425490 425808 -143856681 - AluJo SINE Alu -6 306 1 203 77 0 26 chr12 425971 426010 -143856479 + (TAAAAA)n Simple_repeat Simple_repeat 2 39 0 2125 147 0 0 chr12 426031 426343 -143856146 + AluSx SINE Alu 1 312 0 837 187 0 0 chr12 426359 426493 -143855996 + FLAM_A SINE Alu 6 139 -3 2354 103 0 0 chr12 426529 426839 -143855650 + AluSx SINE Alu 1 310 -2 999 145 22 34 chr12 426855 427034 -143855455 - MER2 DNA MER2_type -168 177 1 1328 116 0 37 chr12 427337 427526 -143854963 - AluSg/x SINE Alu -23 289 108 635 85 0 0 chr12 427526 427608 -143854881 + AluSg1 SINE Alu 16 97 -212 187 286 0 18 chr12 427629 427685 -143854804 - L2 LINE L2 -665 2649 2595 4174 109 27 56 chr12 427872 428073 -143854416 - Tigger1 DNA MER2_type 0 2418 2213 2352 79 0 0 chr12 428073 428365 -143854124 - AluY SINE Alu -19 292 1 4174 109 27 56 chr12 428365 428863 -143853626 - Tigger1 DNA MER2_type -205 2213 1739 1036 65 0 0 chr12 428863 428987 -143853502 - AluSg/x SINE Alu -16 294 171 10588 122 20 44 chr12 428987 429178 -143853311 - Tigger1 DNA MER2_type -673 1745 1551 1715 171 31 3 chr12 429178 429471 -143853018 - AluJb SINE Alu -11 301 1 10588 122 20 44 chr12 429471 429595 -143852894 - Tigger1 DNA MER2_type -867 1551 1426 2271 92 10 3 chr12 429595 429889 -143852600 - AluSp SINE Alu -17 296 1 10588 122 20 44 chr12 429889 431340 -143851149 - Tigger1 DNA MER2_type -992 1426 19 212 190 70 10 chr12 432410 432482 -143850007 + MIR SINE MIR 113 189 -73 219 345 42 48 chr12 433114 433427 -143849062 - L2 LINE L2 -698 2616 2306 459 251 276 5 chr12 433705 433908 -143848581 - MIR SINE MIR 0 262 5 1874 162 7 0 chr12 433908 434211 -143848278 - AluJb SINE Alu -7 305 1 875 193 85 0 chr12 434222 434398 -143848091 - AluJo SINE Alu -24 288 98 2074 104 20 17 chr12 434458 434755 -143847734 + AluSx SINE Alu 3 300 -12 764 149 0 0 chr12 434906 435020 -143847469 + FLAM_C SINE Alu 2 115 -28 2376 93 3 0 chr12 435141 435441 -143847048 - AluSp SINE Alu -12 301 1 1848 159 57 21 chr12 435499 435882 -143846607 + L1MB8 LINE L1 5782 6178 0 2154 264 50 57 chr12 436192 436336 -143846153 - L2 LINE L2 -29 3284 3141 1848 153 32 0 chr12 436336 436618 -143845871 - AluJb SINE Alu -10 302 12 2154 264 50 57 chr12 436618 437084 -143845405 - L2 LINE L2 -172 3141 2673 2191 117 0 0 chr12 437084 437367 -143845122 + AluSx SINE Alu 1 283 -29 2154 264 50 57 chr12 437367 437445 -143845044 - L2 LINE L2 -640 2673 2596 600 228 8 0 chr12 437445 437572 -143844917 + FLAM_C SINE Alu 2 129 -4 2154 264 50 57 chr12 437572 438038 -143844451 - L2 LINE L2 -717 2596 2148 2542 72 0 0 chr12 438202 438506 -143843983 - AluY SINE Alu -7 304 1 591 156 0 0 chr12 438985 439081 -143843408 - FLAM_A SINE Alu -42 100 5 2422 80 0 22 chr12 439343 439655 -143842834 + AluSg SINE Alu 1 305 -5 915 166 13 6 chr12 439943 440100 -143842389 - FRAM SINE Alu -8 158 1 2237 109 0 13 chr12 440133 440436 -143842053 + AluSg SINE Alu 1 299 -11 2082 122 0 0 chr12 440681 440967 -143841522 - AluSp SINE Alu -7 306 21 1786 156 14 0 chr12 440970 441265 -143841224 - AluSx SINE Alu -13 299 1 735 130 0 0 chr12 441365 441473 -143841016 - FLAM_A SINE Alu -11 131 24 2171 102 7 23 chr12 441596 441899 -143840590 - AluSx SINE Alu -14 298 1 886 142 0 22 chr12 441903 442037 -143840452 - FLAM_C SINE Alu -2 131 1 1228 144 13 57 chr12 442877 443106 -143839383 - MER20 DNA MER1_type 0 219 1 2568 54 0 0 chr12 443360 443657 -143838832 - AluY SINE Alu -14 297 1 2431 60 0 10 chr12 443659 443958 -143838531 - AluY SINE Alu -15 296 1 2327 93 3 3 chr12 444046 444347 -143838142 - AluSx SINE Alu -11 301 1 2108 129 0 0 chr12 444510 444796 -143837693 - AluSg SINE Alu -11 299 14 260 154 0 0 chr12 445475 445514 -143836975 + MER21B LTR ERV1 126 164 -699 237 196 39 0 chr12 445576 445627 -143836862 - ALR/Alpha Satellite centromeric -58 114 62 281 157 36 42 chr12 445693 445859 -143836630 + (TATAA)n Simple_repeat Simple_repeat 3 167 0 277 279 6 24 chr12 445862 446027 -143836462 + (TTA)n Simple_repeat Simple_repeat 3 164 0 2046 141 3 13 chr12 446050 446219 -143836270 - AluJo SINE Alu -10 302 136 2244 124 0 0 chr12 446219 446525 -143835964 - AluSq SINE Alu -7 306 1 2046 141 3 13 chr12 446525 446660 -143835829 - AluJo SINE Alu -176 136 1 1286 154 35 95 chr12 446681 446720 -143835769 - L1MB2 LINE L1 -42 6129 6089 483 90 0 0 chr12 446720 446798 -143835691 + (TG)n Simple_repeat Simple_repeat 2 79 0 351 0 0 0 chr12 446797 446836 -143835653 + (TA)n Simple_repeat Simple_repeat 1 39 0 * 1286 154 35 95 chr12 446798 446836 -143835653 - L1MB2 LINE L1 -82 6089 6050 1597 137 12 4 chr12 446836 447085 -143835404 - AluSx SINE Alu -12 300 50 1286 154 35 95 chr12 447085 447246 -143835243 - L1MB2 LINE L1 -121 6050 5953 1925 106 22 99 chr12 447246 447568 -143834921 + AluSx SINE Alu 2 298 -14 1286 154 35 95 chr12 447568 447703 -143834786 - L1MB2 LINE L1 -218 5953 5812 2099 104 46 0 chr12 448052 448332 -143834157 + AluSx SINE Alu 1 293 -19 2144 128 20 0 chr12 448456 448754 -143833735 + AluSx SINE Alu 1 304 -8 291 28 0 0 chr12 449101 449137 -143833352 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1757 168 4 0 chr12 449138 449418 -143833071 - AluSx SINE Alu -31 281 1 744 294 127 17 chr12 449465 449757 -143832732 - LTR16A LTR ERVL -6 444 121 2417 151 34 5 chr12 452206 452617 -143829872 - L1MB3 LINE L1 -13 6170 5748 1285 204 0 13 chr12 452620 452855 -143829634 - AluJb SINE Alu -80 232 1 1643 104 79 156 chr12 452855 453056 -143829433 - L1M3 LINE L1 -509 5674 5459 1974 129 3 62 chr12 453056 453381 -143829108 - AluJb SINE Alu -6 306 1 1643 104 79 156 chr12 453381 453425 -143829064 - L1M3 LINE L1 -724 5459 5413 1981 166 0 3 chr12 453425 453738 -143828751 - AluJb SINE Alu 0 312 1 1643 104 79 156 chr12 453738 453923 -143828566 - L1M3 LINE L1 -770 5413 5294 1878 143 35 0 chr12 453923 454210 -143828279 - AluJb SINE Alu -15 297 1 1643 104 79 156 chr12 454210 454309 -143828180 - L1M3 LINE L1 -889 5294 5189 241 156 0 0 chr12 454311 454356 -143828133 - AluJo SINE Alu -3 299 255 1093 178 0 70 chr12 454356 454570 -143827919 - AluJo SINE Alu -113 199 1 1387 184 0 4 chr12 454570 454842 -143827647 - L1M3 LINE L1 -979 5167 4897 2183 127 0 6 chr12 454858 455172 -143827317 - AluJb SINE Alu 0 312 1 572 293 47 14 chr12 455424 455639 -143826850 - HERV16 LTR ERVL -2409 3076 2855 1647 298 82 24 chr12 455699 455785 -143826704 - HERV16 LTR ERVL -2430 2566 2486 2221 98 3 3 chr12 455785 456104 -143826385 - AluSg SINE Alu 0 310 1 1647 298 82 24 chr12 456104 456929 -143825560 - HERV16 LTR ERVL -2510 2486 1735 2192 88 0 4 chr12 456929 457203 -143825286 + AluSg SINE Alu 25 297 -13 1647 298 82 24 chr12 457203 457370 -143825119 - HERV16 LTR ERVL -3261 1735 1579 2129 104 10 3 chr12 457417 457714 -143824775 - AluSx SINE Alu -13 299 1 859 280 206 16 chr12 457769 458133 -143824356 - LTR16A LTR ERVL -6 444 12 2354 74 3 0 chr12 458172 458481 -143824008 + AluY SINE Alu 1 310 -1 250 265 84 0 chr12 458945 459028 -143823461 - MIR SINE MIR -66 196 107 262 263 41 67 chr12 459116 459310 -143823179 - L1ME4a LINE L1 -2 6119 5931 1876 144 7 0 chr12 459405 459696 -143822793 - AluJb SINE Alu -15 297 5 24 32 0 0 chr12 459709 459740 -143822749 + AT_rich Low_complexity Low_complexity 1 31 0 614 195 0 49 chr12 459740 459863 -143822626 - FLAM_A SINE Alu -13 120 4 2117 102 3 0 chr12 459916 460234 -143822255 - AluSp SINE Alu 0 319 1 952 194 0 0 chr12 460237 460397 -143822092 - FRAM SINE Alu -16 160 1 1990 97 48 3 chr12 460738 461027 -143821462 + AluSx SINE Alu 1 302 -10 1703 159 3 38 chr12 461151 461471 -143821018 - AluSq SINE Alu -4 309 1 1612 137 47 18 chr12 462700 462978 -143819511 + AluJo SINE Alu 1 286 -26 239 67 0 0 chr12 463528 463558 -143818931 + Alu SINE Alu 1 30 -273 * 405 92 105 53 chr12 463532 463608 -143818881 + AluJ/FRAM SINE Alu 218 297 -5 224 285 58 90 chr12 464159 464286 -143818203 + L2 LINE L2 1792 1922 -1392 2089 124 3 0 chr12 464286 464593 -143817896 - AluSx SINE Alu -4 308 1 224 285 58 90 chr12 464593 464777 -143817712 + L2 LINE L2 1922 2093 -1221 196 295 137 0 chr12 464800 464895 -143817594 + L2 LINE L2 2301 2408 -906 1805 163 0 3 chr12 465699 465981 -143816508 - AluJo SINE Alu -31 281 1 2195 45 10 35 chr12 466051 466339 -143816150 - AluY SINE Alu -4 307 27 895 98 16 0 chr12 466342 466465 -143816024 - AluSq/x SINE Alu -187 125 1 1422 169 32 52 chr12 467499 467807 -143814682 + AluJo SINE Alu 1 302 -10 189 0 0 0 chr12 468686 468707 -143813782 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 2012 113 0 36 chr12 468728 469037 -143813452 + AluSg SINE Alu 1 298 -12 669 311 94 26 chr12 469038 469179 -143813310 - L2 LINE L2 -13 3300 3170 2233 95 0 0 chr12 469179 469473 -143813016 + AluSx SINE Alu 1 294 -18 1767 112 4 7 chr12 469473 469741 -143812748 + AluSg SINE Alu 33 300 -10 669 311 94 26 chr12 469741 470187 -143812302 - L2 LINE L2 -142 3171 2681 23 54 0 0 chr12 472538 472575 -143809914 + AT_rich Low_complexity Low_complexity 1 37 0 1974 100 25 0 chr12 472718 472879 -143809610 - AluSq SINE Alu -25 288 116 216 0 0 0 chr12 472879 472903 -143809586 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1974 100 25 0 chr12 472903 473022 -143809467 - AluSq SINE Alu -197 116 1 2203 102 0 0 chr12 473332 473626 -143808863 + AluSc SINE Alu 1 294 -15 236 289 96 0 chr12 473806 473889 -143808600 - MIR3 SINE MIR -3 205 115 267 305 238 7 chr12 474031 474182 -143808307 + MIR SINE MIR 2 187 -75 3940 168 58 3 chr12 474194 474938 -143807551 + L1MB7 LINE L1 5254 6038 -146 455 117 43 32 chr12 474944 475021 -143807468 + L1MB7 LINE L1 6090 6170 -14 1866 143 7 3 chr12 475021 475315 -143807174 - AluJb SINE Alu -17 295 1 455 117 43 32 chr12 475315 475331 -143807158 + L1MB7 LINE L1 6170 6184 0 1350 199 39 52 chr12 475515 475821 -143806668 - AluJo SINE Alu 0 302 1 2278 62 3 36 chr12 475831 476138 -143806351 - AluY SINE Alu -14 297 1 1477 131 84 29 chr12 476617 476891 -143805598 + AluJb SINE Alu 1 289 -23 21 36 0 0 chr12 476930 476958 -143805531 + AT_rich Low_complexity Low_complexity 1 28 0 1395 176 16 0 chr12 477494 477739 -143804750 + AluJo SINE Alu 49 297 -15 314 299 174 52 chr12 477834 477982 -143804507 - L2 LINE L2 -1037 2277 2148 2417 49 3 3 chr12 477982 478286 -143804203 - AluY SINE Alu -7 304 1 314 299 174 52 chr12 478286 478562 -143803927 - L2 LINE L2 -1166 2148 1801 201 237 43 32 chr12 478783 478876 -143803613 - L2 LINE L2 -1904 1410 1317 1840 148 3 3 chr12 479648 479945 -143802544 + AluJo SINE Alu 6 302 -10 390 176 22 22 chr12 480116 480207 -143802282 - L1MD1 LINE L1 -13 6229 6139 762 209 0 0 chr12 480861 480995 -143801494 - AluJo SINE Alu -178 134 1 666 215 15 0 chr12 481779 481909 -143800580 - AluJb SINE Alu -25 287 156 1066 146 158 62 chr12 481956 482095 -143800394 + AluJo SINE Alu 5 129 -183 2088 117 23 0 chr12 482095 482395 -143800094 + AluSx SINE Alu 1 307 -5 1066 146 158 62 chr12 482395 482495 -143799994 + AluJo SINE Alu 129 267 -45 706 97 167 0 chr12 482746 482860 -143799629 - AluJo SINE Alu -178 134 2 2275 48 44 0 chr12 484043 484338 -143798151 - AluY SINE Alu -2 309 2 411 313 55 46 chr12 486056 486273 -143796216 + MIR SINE MIR 20 238 -24 328 278 0 72 chr12 486339 486436 -143796053 + L1MC4 LINE L1 6613 6702 -1340 893 147 102 6 chr12 488544 488701 -143793788 - FRAM SINE Alu -5 171 1 189 268 110 24 chr12 488989 489071 -143793418 + MIR SINE MIR 76 164 -98 982 163 0 0 chr12 489095 489261 -143793228 - AluJb SINE Alu -17 295 130 255 31 0 0 chr12 489846 489878 -143792611 + (CGGGGG)n Simple_repeat Simple_repeat 3 34 0 203 128 51 0 chr12 489923 489962 -143792527 + (CGGG)n Simple_repeat Simple_repeat 2 42 0 47 92 0 0 chr12 490218 490349 -143792140 + GC_rich Low_complexity Low_complexity 1 131 0 21 36 0 0 chr12 490512 490540 -143791949 + GC_rich Low_complexity Low_complexity 1 28 0 213 207 32 36 chr12 491252 491314 -143791175 + MIR SINE MIR 90 150 -58 261 248 191 0 chr12 491783 491888 -143790601 + MIR3 SINE MIR 62 186 -22 251 305 23 62 chr12 491918 492095 -143790394 - L3 LINE CR1 -127 1450 1281 348 331 102 80 chr12 493389 493812 -143788677 - L2 LINE L2 -3 3269 2838 2010 102 10 14 chr12 494289 494584 -143787905 + AluSx SINE Alu 1 294 -18 187 154 39 96 chr12 495234 495286 -143787203 + L2 LINE L2 3262 3310 -3 22 35 0 0 chr12 496690 496719 -143785770 + AT_rich Low_complexity Low_complexity 1 29 0 388 202 0 36 chr12 496836 496920 -143785569 - L1ME3A LINE L1 -61 6109 6029 266 208 0 14 chr12 496952 497024 -143785465 - L1ME3A LINE L1 -200 5964 5894 21 0 0 0 chr12 497033 497054 -143785435 + AT_rich Low_complexity Low_complexity 1 21 0 542 161 11 0 chr12 497061 497148 -143785341 - FRAM SINE Alu -24 152 65 2005 131 7 0 chr12 497218 497523 -143784966 + AluSx SINE Alu 1 307 -5 337 347 127 14 chr12 499091 499304 -143783185 + MIR SINE MIR 20 256 -6 23 0 0 0 chr12 499743 499766 -143782723 + AT_rich Low_complexity Low_complexity 1 23 0 929 126 0 0 chr12 499766 499893 -143782596 - FLAM_C SINE Alu -6 127 1 1946 97 37 0 chr12 500677 500968 -143781521 - AluSx SINE Alu 0 303 3 1863 126 7 0 chr12 501048 501366 -143781123 + AluSg SINE Alu 1 320 0 2052 122 0 0 chr12 501366 501652 -143780837 + AluSx SINE Alu 1 286 -26 220 0 86 0 chr12 501656 501691 -143780798 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 28 48 0 0 chr12 501708 501750 -143780739 + AT_rich Low_complexity Low_complexity 1 42 0 383 271 45 8 chr12 501784 501917 -143780572 - L1MEd LINE L1 -5932 187 50 1327 206 3 47 chr12 502227 502388 -143780101 - AluJo SINE Alu -17 295 151 2195 59 38 0 chr12 502388 502678 -143779811 - AluY SINE Alu -10 301 1 1327 206 3 47 chr12 502678 502817 -143779672 - AluJo SINE Alu -161 151 8 1569 174 43 0 chr12 502918 503199 -143779290 - AluJo SINE Alu -9 303 11 541 245 55 70 chr12 503633 503833 -143778656 - L2 LINE L2 -3 3310 3114 1913 151 3 19 chr12 504479 504619 -143777870 + AluJo SINE Alu 1 142 -170 1744 141 41 0 chr12 504619 504909 -143777580 + AluJb SINE Alu 1 302 -10 1913 151 3 19 chr12 504909 505085 -143777404 + AluJo SINE Alu 142 312 0 921 229 62 33 chr12 505996 506240 -143776249 + MIR SINE MIR 6 256 -6 1478 152 0 84 chr12 506243 506565 -143775924 + AluJo SINE Alu 1 295 -17 500 281 20 7 chr12 506828 506981 -143775508 - MER117 DNA MER1_type -35 162 8 229 282 0 71 chr12 506957 507042 -143775447 - MIR3 SINE MIR -37 171 93 * 1860 174 0 10 chr12 507910 508214 -143774275 + AluJo SINE Alu 5 305 -7 716 187 8 22 chr12 509150 509284 -143773205 - FLAM_A SINE Alu 0 133 2 243 296 0 61 chr12 509508 509623 -143772866 - L2 LINE L2 -1313 2001 1894 2565 43 0 7 chr12 509854 510156 -143772333 - AluY SINE Alu -11 300 1 398 287 34 40 chr12 510222 510406 -143772083 + MIR3 SINE MIR 8 191 -17 481 217 104 0 chr12 512291 512406 -143770083 - MIR3 SINE MIR -9 199 73 927 218 0 0 chr12 512656 512826 -143769663 + FAM SINE Alu 1 170 -5 1791 193 0 7 chr12 512839 513139 -143769350 - AluJb SINE Alu -2 310 13 1887 157 0 4 chr12 513356 513637 -143768852 + AluJb SINE Alu 1 280 -32 340 318 121 8 chr12 513654 513786 -143768703 - MIR SINE MIR -40 222 76 376 198 128 116 chr12 514369 514541 -143767948 + MER5B DNA MER1_type 1 174 -4 22 0 0 0 chr12 514734 514756 -143767733 + AT_rich Low_complexity Low_complexity 1 22 0 281 210 32 16 chr12 515533 515595 -143766894 - MER5B DNA MER1_type 0 178 116 230 317 12 0 chr12 515596 515678 -143766811 + L1ME2 LINE L1 6072 6154 -10 6645 169 67 7 chr12 515704 516144 -143766345 + L1MCa LINE L1 30 442 -5984 2292 115 3 0 chr12 516144 516448 -143766041 - AluSg SINE Alu -5 305 1 6645 169 67 7 chr12 516448 517373 -143765116 + L1MCa LINE L1 442 1477 -4949 2388 119 0 0 chr12 517373 517683 -143764806 + AluSx SINE Alu 2 311 -1 1226 164 37 23 chr12 517694 517908 -143764581 + AluJb SINE Alu 82 298 -14 322 111 99 49 chr12 517911 517992 -143764497 + L1MCa LINE L1 1471 1555 -4871 232 162 0 0 chr12 518008 518045 -143764444 + Alu SINE Alu 11 47 -255 2436 111 95 16 chr12 518045 518546 -143763943 + L1MCa LINE L1 1560 2179 -4247 1097 184 17 63 chr12 518550 518789 -143763700 + AluJo SINE Alu 85 312 0 9995 210 49 17 chr12 518805 518907 -143763582 + L1MCa LINE L1 2197 2294 -4319 2821 58 29 16 chr12 518907 519283 -143763206 + L1PA8 LINE L1 5791 6171 -1 9995 210 49 17 chr12 519283 520396 -143762093 + L1MCa LINE L1 2294 3370 -3243 1844 149 35 3 chr12 520396 520684 -143761805 + AluJb SINE Alu 1 297 -15 9995 210 49 17 chr12 520684 521273 -143761216 + L1MCa LINE L1 3370 3938 -2675 2070 152 10 0 chr12 521273 521570 -143760919 - AluJb SINE Alu -12 300 1 9995 210 49 17 chr12 521570 521715 -143760774 + L1MCa LINE L1 3938 4077 -2536 2224 113 7 13 chr12 521715 522024 -143760465 + AluSg SINE Alu 1 307 -3 9995 210 49 17 chr12 522024 523480 -143759009 + L1MCa LINE L1 4077 5894 -719 2248 103 0 57 chr12 523929 524260 -143758229 + AluJb SINE Alu 1 312 0 574 290 122 9 chr12 524975 525196 -143757293 - MIR SINE MIR -3 259 14 431 292 260 0 chr12 525504 525658 -143756831 + MER91A DNA MER1_type 3 196 0 2439 139 107 61 chr12 526218 526267 -143756222 - L1MB5 LINE L1 -6 6168 6123 2226 109 3 0 chr12 526267 526560 -143755929 + AluSx SINE Alu 9 302 -10 2439 139 107 61 chr12 526560 526820 -143755669 - L1MB5 LINE L1 -51 6123 5877 1261 165 169 0 chr12 526820 527075 -143755414 - AluJo SINE Alu -3 299 2 2387 62 36 7 chr12 527080 527384 -143755105 - AluSp SINE Alu 0 313 1 2439 139 107 61 chr12 527384 527626 -143754863 - L1MB5 LINE L1 -300 5874 5584 300 234 13 65 chr12 529623 529700 -143752789 + L2 LINE L2 3241 3313 0 404 243 88 7 chr12 529721 529869 -143752620 - Charlie8 DNA MER1_type -2213 204 45 980 141 18 41 chr12 530076 530246 -143752243 - FRAM SINE Alu 0 166 1 2149 109 0 23 chr12 530807 531110 -143751379 - AluSx SINE Alu -10 302 7 1291 126 0 0 chr12 531372 531546 -143750943 + FRAM SINE Alu 1 170 -6 238 285 115 55 chr12 531609 531774 -143750715 + MER5B DNA MER1_type 1 175 -3 * 402 236 61 88 chr12 531630 531778 -143750711 - MER5A DNA MER1_type -32 157 14 1892 153 7 19 chr12 532689 532996 -143749493 - AluJo SINE Alu -5 307 5 212 296 0 0 chr12 533396 533450 -143749039 + MIR SINE MIR 91 144 -64 204 186 103 72 chr12 533667 533764 -143748725 + L2 LINE L2 1902 2001 -1313 2258 117 0 0 chr12 533774 534072 -143748417 + AluSx SINE Alu 1 298 -14 859 126 16 0 chr12 534116 534243 -143748246 + AluJb SINE Alu 177 305 -7 1022 173 6 0 chr12 534410 534572 -143747917 - AluSg/x SINE Alu -21 289 127 560 167 20 10 chr12 534572 534674 -143747815 + AluJo/FRAM SINE Alu 203 305 -7 2284 88 7 10 chr12 534836 535133 -143747356 - AluSq SINE Alu -17 296 1 441 272 190 6 chr12 536159 536317 -143746172 - MIR3 SINE MIR -2 206 20 2674 52 0 0 chr12 536568 536877 -143745612 - AluY SINE Alu -2 309 1 894 211 52 9 chr12 536884 537116 -143745373 - L1MC3 LINE L1 0 7785 7544 1351 183 0 45 chr12 538218 538464 -143744025 - AluJo SINE Alu -18 294 60 875 169 33 0 chr12 540773 540956 -143741533 - L1MB7 LINE L1 -60 6124 5936 1119 136 60 0 chr12 540966 541150 -143741339 - AluJ SINE Alu 0 312 118 211 256 45 34 chr12 541315 541491 -143740998 + CT-rich Low_complexity Low_complexity 1 178 0 204 227 64 29 chr12 541641 541813 -143740676 + CT-rich Low_complexity Low_complexity 1 178 0 239 249 40 40 chr12 542217 542394 -143740095 + CT-rich Low_complexity Low_complexity 1 177 0 3028 132 17 33 chr12 542749 543271 -143739218 - MER41A LTR ERV1 -40 514 1 729 148 16 16 chr12 543294 543416 -143739073 - AluJ SINE Alu -188 124 3 1527 158 129 21 chr12 543416 543722 -143738767 - L1MB7 LINE L1 -341 5824 5486 2696 43 0 0 chr12 543722 544026 -143738463 - AluY SINE Alu -7 304 1 1527 158 129 21 chr12 544026 544070 -143738419 - L1MB7 LINE L1 -679 5486 5448 969 211 59 62 chr12 544248 544276 -143738213 + MIR SINE MIR 8 35 -227 2201 111 37 0 chr12 544276 544574 -143737915 + AluSx SINE Alu 1 309 -3 969 211 59 62 chr12 544574 544704 -143737785 + MIR SINE MIR 35 167 -95 2101 80 10 47 chr12 544704 545026 -143737463 - AluSc SINE Alu 0 309 1 969 211 59 62 chr12 545026 545122 -143737367 + MIR SINE MIR 167 262 0 288 282 59 0 chr12 545166 545251 -143737238 - MIR SINE MIR -70 192 103 1113 239 104 51 chr12 545339 545385 -143737104 - L2 LINE L2 -54 3259 3217 2489 59 0 29 chr12 545385 545692 -143736797 + AluY SINE Alu 1 298 -13 1113 239 104 51 chr12 545692 546059 -143736430 - L2 LINE L2 -96 3217 2824 452 273 18 0 chr12 546079 546189 -143736300 + MER94 DNA DNA 3 114 -20 1579 252 159 42 chr12 546193 546867 -143735622 - L2 LINE L2 -513 2801 2049 501 281 96 11 chr12 547446 547624 -143734865 + MIR SINE MIR 12 204 -58 357 302 40 13 chr12 547662 547794 -143734695 - MIR SINE MIR -74 134 7 1084 167 81 102 chr12 547818 547952 -143734537 + MER2 DNA MER2_type 1 136 -209 1579 152 54 11 chr12 547952 548229 -143734260 - AluJo SINE Alu -23 289 1 1084 167 81 102 chr12 548229 548429 -143734060 + MER2 DNA MER2_type 136 328 -17 879 58 0 0 chr12 550219 550323 -143732166 + AluSg/x SINE Alu 180 283 -27 267 293 49 0 chr12 551261 551343 -143731146 - MER5C DNA MER1_type -201 123 38 2672 149 33 33 chr12 551700 552182 -143730307 + L1MB3 LINE L1 5650 6134 -49 1850 128 13 39 chr12 552182 552494 -143729995 + AluJb SINE Alu 1 304 -8 2672 149 33 33 chr12 552494 552533 -143729956 + L1MB3 LINE L1 6133 6171 -12 315 298 26 67 chr12 553083 553239 -143729250 + MIR SINE MIR 2 150 -65 2228 107 3 3 chr12 553310 553609 -143728880 + AluSg SINE Alu 1 299 -11 228 111 0 0 chr12 554169 554205 -143728284 + (A)n Simple_repeat Simple_repeat 1 36 0 600 254 57 43 chr12 554206 554415 -143728074 + MIR SINE MIR 50 261 -1 2317 91 0 0 chr12 554616 554938 -143727551 - AluSx SINE Alu 0 322 1 222 227 15 76 chr12 555714 555780 -143726709 + L2 LINE L2 3201 3262 -10 207 0 0 0 chr12 556198 556221 -143726268 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 186 43 0 0 chr12 556222 556245 -143726244 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1524 179 100 0 chr12 556450 556610 -143725879 - AluJb SINE Alu -4 308 165 219 36 0 0 chr12 556610 556638 -143725851 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1524 179 100 0 chr12 556638 556757 -143725732 - AluJb SINE Alu -147 165 1 327 250 25 0 chr12 557644 557724 -143724765 + MIR SINE MIR 47 128 -134 22 0 0 0 chr12 557733 557755 -143724734 + AT_rich Low_complexity Low_complexity 1 22 0 1067 150 6 39 chr12 557739 557919 -143724570 - FAM SINE Alu -1 174 1 243 305 0 0 chr12 559169 559228 -143723261 + MIR SINE MIR 203 261 -1 411 299 71 0 chr12 560145 560272 -143722217 + MIR SINE MIR 81 216 -46 217 321 0 0 chr12 560712 560765 -143721724 + L2 LINE L2 3207 3259 -13 1577 187 47 17 chr12 560896 561195 -143721294 + AluJo SINE Alu 1 308 -4 414 288 153 6 chr12 561306 561469 -143721020 - MIR SINE MIR -10 252 66 751 145 0 83 chr12 561490 561635 -143720854 - FLAM_C SINE Alu 0 133 1 1762 211 106 12 chr12 561901 562327 -143720162 - MER31B LTR ERV1 0 466 1 223 269 137 58 chr12 563100 563290 -143719199 + MIR SINE MIR 14 214 -37 451 326 62 26 chr12 563624 563817 -143718672 + MIR3 SINE MIR 2 201 -7 28 0 0 0 chr12 566004 566032 -143716457 + AT_rich Low_complexity Low_complexity 1 28 0 791 197 0 0 chr12 566043 566175 -143716314 - FLAM_A SINE Alu 0 133 2 327 333 180 0 chr12 566245 566395 -143716094 - MIR SINE MIR -3 259 83 433 229 93 7 chr12 566483 566623 -143715866 - MER103 DNA DNA -3 163 12 1402 181 120 18 chr12 566810 567086 -143715403 - AluJo SINE Alu -8 304 1 191 345 0 8 chr12 567090 567183 -143715306 - MIR SINE MIR -63 145 57 21 0 0 0 chr12 567696 567717 -143714772 + AT_rich Low_complexity Low_complexity 1 21 0 1893 151 0 13 chr12 567804 568115 -143714374 + AluJb SINE Alu 1 307 -5 237 278 56 95 chr12 568225 568351 -143714138 - MIR3 SINE MIR -39 169 49 186 213 307 0 chr12 568478 568553 -143713936 - MIR SINE MIR -102 160 63 379 68 0 123 chr12 569087 569160 -143713329 - L1MB8 LINE L1 -6 6172 6109 1607 188 7 0 chr12 569160 569436 -143713053 + AluJo SINE Alu 1 278 -34 189 0 0 0 chr12 569442 569463 -143713026 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 518 331 69 23 chr12 569934 570261 -143712228 - L2 LINE L2 -181 3091 2727 2504 65 0 0 chr12 570261 570571 -143711918 - AluY SINE Alu 0 311 2 518 331 69 23 chr12 570571 570706 -143711783 - L2 LINE L2 -545 2727 2600 417 269 19 0 chr12 570777 570885 -143711604 + MIR3 SINE MIR 77 186 -22 213 108 0 0 chr12 571361 571398 -143711091 + (CACCC)n Simple_repeat Simple_repeat 3 39 0 619 209 9 0 chr12 573985 574100 -143708389 + MER91A DNA MER1_type 1 116 -80 255 245 21 21 chr12 574961 575055 -143707434 + G-rich Low_complexity Low_complexity 1 94 0 322 144 0 89 chr12 575056 575236 -143707253 + (GGAGA)n Simple_repeat Simple_repeat 4 167 0 185 155 0 99 chr12 575239 575381 -143707108 + GA-rich Low_complexity Low_complexity 4 131 0 420 301 11 19 chr12 575415 575633 -143706856 + G-rich Low_complexity Low_complexity 1 216 0 245 331 18 31 chr12 575792 575955 -143706534 + CT-rich Low_complexity Low_complexity 1 161 0 545 233 41 7 chr12 576175 576321 -143706168 - MIR3 SINE MIR -38 170 20 1227 219 35 13 chr12 576502 576812 -143705677 + L1MA4A LINE L1 5985 6301 -2 297 306 306 0 chr12 576895 577065 -143705424 + MIR SINE MIR 9 230 -32 * 338 298 173 42 chr12 577029 577220 -143705269 - MIR SINE MIR -12 250 35 1875 129 43 20 chr12 577947 578250 -143704239 + AluJo SINE Alu 1 310 -2 195 200 25 0 chr12 578261 578301 -143704188 - MIR3 SINE MIR -52 156 116 713 328 9 4 chr12 578546 578775 -143703714 + MIR SINE MIR 23 252 -10 307 351 26 9 chr12 578777 578891 -143703598 + MER91B DNA MER1_type 75 190 0 1005 191 0 0 chr12 579660 579838 -143702651 + AluJb SINE Alu 135 312 0 396 0 0 0 chr12 581612 581656 -143700833 + (CA)n Simple_repeat Simple_repeat 2 45 0 613 195 88 13 chr12 582266 582425 -143700064 - MIR SINE MIR -66 196 26 231 167 0 0 chr12 583051 583093 -143699396 + GA-rich Low_complexity Low_complexity 1 42 0 2932 182 30 79 chr12 583748 583828 -143698661 - L1MB7 LINE L1 -16 6168 6086 2737 23 0 0 chr12 583828 584137 -143698352 + AluY SINE Alu 1 309 -2 2932 182 30 79 chr12 584137 584215 -143698274 - L1MB7 LINE L1 -98 6086 6006 2216 128 0 0 chr12 584215 584527 -143697962 + AluSx SINE Alu 1 312 0 2932 182 30 79 chr12 584527 585092 -143697397 - L1MB7 LINE L1 -178 6006 5492 2397 84 3 0 chr12 585092 585401 -143697088 - AluY SINE Alu 0 311 2 2932 182 30 79 chr12 585401 585559 -143696930 - L1MB7 LINE L1 -692 5492 5328 489 329 0 13 chr12 585622 585780 -143696709 - MIR3 SINE MIR -14 194 39 315 315 113 13 chr12 586232 586413 -143696076 - MIR SINE MIR -41 221 19 344 280 192 0 chr12 588211 588336 -143694153 - L2 LINE L2 -1 3271 3123 189 289 78 56 chr12 588885 588975 -143693514 + MIR SINE MIR 96 187 -75 426 269 47 23 chr12 589679 589839 -143692650 - MIR SINE MIR -56 206 41 272 290 187 0 chr12 590427 590534 -143691955 - MIR SINE MIR -108 154 28 182 370 40 0 chr12 592943 593043 -143689446 - L2 LINE L2 -30 3242 3139 359 234 0 26 chr12 594119 594196 -143688293 - MER5A DNA MER1_type -99 90 16 242 285 153 7 chr12 595558 595695 -143686794 + MIR3 SINE MIR 34 190 -18 296 311 10 19 chr12 595912 596015 -143686474 - MER91A DNA MER1_type -29 167 66 339 157 0 0 chr12 596794 596864 -143685625 + (TGGA)n Simple_repeat Simple_repeat 4 73 0 190 103 0 0 chr12 596914 596943 -143685546 + MIR SINE MIR 96 124 -84 2030 134 3 10 chr12 597043 597348 -143685141 + AluSx SINE Alu 1 303 -9 399 251 36 36 chr12 597358 597553 -143684936 - Charlie7 DNA MER1_type 0 2612 2418 23 0 0 0 chr12 598196 598219 -143684270 + GC_rich Low_complexity Low_complexity 1 23 0 185 341 73 49 chr12 599582 599705 -143682784 + L3b LINE CR1 1439 1564 -19 594 301 30 0 chr12 601961 602127 -143680362 - MIR SINE MIR -12 250 80 1318 92 0 0 chr12 602170 602343 -143680146 - AluSq SINE Alu -7 306 134 2304 82 0 3 chr12 602343 602646 -143679843 - AluSx SINE Alu -10 302 1 1024 171 0 17 chr12 602747 602928 -143679561 + AluSg/x SINE Alu 135 312 0 1978 94 45 3 chr12 603271 603559 -143678930 + AluSq SINE Alu 1 300 -13 562 103 26 0 chr12 603571 603672 -143678817 + AluSg/x SINE Alu 209 311 0 2013 212 23 13 chr12 603699 604091 -143678398 + MSTD LTR MaLR 1 396 0 828 214 12 0 chr12 605803 605976 -143676513 - AluJo SINE Alu -1 311 137 1668 150 17 0 chr12 606425 606725 -143675764 + MER47A DNA MER2_type 58 362 -4 234 62 0 0 chr12 606736 606768 -143675721 + (TA)n Simple_repeat Simple_repeat 2 33 0 634 99 0 0 chr12 606770 606851 -143675638 - AluSg/x SINE Alu -69 243 163 319 281 174 0 chr12 606852 606971 -143675518 - MIR SINE MIR -114 148 9 356 224 0 0 chr12 606971 607038 -143675451 + MER5A DNA MER1_type 1 67 -122 862 141 7 7 chr12 607041 607176 -143675313 - AluJo SINE Alu -177 135 1 22 0 0 0 chr12 607188 607210 -143675279 + AT_rich Low_complexity Low_complexity 1 22 0 1537 191 113 33 chr12 607252 607677 -143674812 + LTR2B LTR ERV1 32 490 0 1543 162 19 15 chr12 607678 607937 -143674552 - AluJo SINE Alu -52 260 1 251 303 53 0 chr12 607938 608014 -143674475 - MIR SINE MIR -171 91 12 1037 216 119 113 chr12 608725 608802 -143673687 + MER4C LTR ERV1 1 76 -389 352 0 20 20 chr12 608802 608851 -143673638 + (CAAAA)n Simple_repeat Simple_repeat 5 53 0 1037 216 119 113 chr12 608851 609235 -143673254 + MER4C LTR ERV1 76 465 0 189 74 0 0 chr12 609588 609615 -143672874 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2164 118 3 0 chr12 609631 609919 -143672570 + AluSx SINE Alu 7 295 -17 768 178 0 0 chr12 610118 610298 -143672191 + (TG)n Simple_repeat Simple_repeat 1 180 0 738 167 0 0 chr12 610351 610531 -143671958 + (TG)n Simple_repeat Simple_repeat 1 180 0 304 220 89 48 chr12 611337 611490 -143670999 - MIR SINE MIR -59 149 1 207 271 136 0 chr12 611509 611568 -143670921 + L2 LINE L2 3206 3272 0 385 296 0 0 chr12 611570 611746 -143670743 + (CATG)n Simple_repeat Simple_repeat 2 177 0 358 299 0 0 chr12 611809 611986 -143670503 + (CATG)n Simple_repeat Simple_repeat 4 180 0 * 401 301 0 0 chr12 611948 612177 -143670312 + (TGAA)n Simple_repeat Simple_repeat 1 229 0 303 322 0 0 chr12 612220 612397 -143670092 + (TGAA)n Simple_repeat Simple_repeat 2 178 0 * 391 299 0 0 chr12 612280 612457 -143670032 + (CATG)n Simple_repeat Simple_repeat 4 180 0 251 233 192 17 chr12 612963 613083 -143669406 + MIR SINE MIR 18 158 -104 234 270 95 7 chr12 613115 613252 -143669237 + L1ME4a LINE L1 5946 6094 -27 1085 181 42 23 chr12 613457 613673 -143668816 + AluJo SINE Alu 1 220 -92 328 100 0 0 chr12 613673 613723 -143668766 + AluSq/x SINE Alu 86 135 -168 2175 122 3 0 chr12 613723 614026 -143668463 + AluSx SINE Alu 1 304 -8 2023 93 41 7 chr12 614052 614342 -143668147 + AluSg SINE Alu 5 304 -6 250 53 0 126 chr12 614674 614769 -143667720 + (GGGAA)n Simple_repeat Simple_repeat 2 84 0 184 214 0 24 chr12 614899 614941 -143667548 - L2 LINE L2 -1 3312 3272 275 146 21 0 chr12 615239 615287 -143667202 - MER45 DNA AcHobo -14 1567 1519 375 219 0 0 chr12 615331 615413 -143667076 - MER45 DNA AcHobo -918 122 41 324 289 79 9 chr12 615836 615950 -143666539 - MIR3 SINE MIR -53 155 34 183 275 242 17 chr12 617012 617132 -143665357 + L2 LINE L2 3036 3182 -90 209 117 96 0 chr12 617353 617447 -143665042 + GA-rich Low_complexity Low_complexity 2 104 0 555 295 161 9 chr12 617621 617838 -143664651 - MIR SINE MIR 0 262 13 463 266 47 107 chr12 618035 618399 -143664090 + L1MC4a LINE L1 5463 5804 -317 305 249 102 51 chr12 618446 618643 -143663846 + L1MC4a LINE L1 5789 5995 -1813 336 127 18 0 chr12 618734 618789 -143663700 - U7 snRNA snRNA -7 56 1 264 305 78 31 chr12 618899 619027 -143663462 - L2 LINE L2 -1 3271 3138 582 131 9 47 chr12 619303 619410 -143663079 - AluJo SINE Alu -178 134 32 506 300 105 5 chr12 621274 621464 -143661025 + MIR SINE MIR 16 224 -38 2255 97 3 10 chr12 621618 621916 -143660573 + AluSq SINE Alu 1 296 -17 343 321 93 50 chr12 621996 622339 -143660150 + L1MC1 LINE L1 3014 3371 -2775 1813 126 16 0 chr12 622663 622918 -143659571 + AluJb SINE Alu 29 287 -25 435 155 0 0 chr12 622918 623002 -143659487 + GA-rich Low_complexity Low_complexity 1 84 0 204 40 0 0 chr12 623020 623045 -143659444 + (CAG)n Simple_repeat Simple_repeat 2 26 0 4645 190 26 68 chr12 623124 623556 -143658933 + L1MC1 LINE L1 3973 4422 -1911 304 50 0 100 chr12 623556 623616 -143658873 + L1MA4A LINE L1 6244 6297 -6 4645 190 26 68 chr12 623616 623705 -143658784 + L1MC1 LINE L1 4422 4513 -1820 741 176 0 63 chr12 623705 623847 -143658642 + FLAM_C SINE Alu 1 133 0 4645 190 26 68 chr12 623847 624692 -143657797 + L1MC1 LINE L1 4513 5236 -1097 2035 98 79 0 chr12 624692 624969 -143657520 + AluSp SINE Alu 1 299 -14 4645 190 26 68 chr12 624969 625461 -143657028 + L1MC1 LINE L1 5236 5747 -586 1504 189 17 26 chr12 625461 625759 -143656730 + L1MC1 LINE L1 6035 6333 0 1999 142 7 7 chr12 625840 626142 -143656347 + AluJb SINE Alu 1 302 -10 732 265 33 0 chr12 626406 626587 -143655902 + MIR SINE MIR 76 262 0 365 205 71 54 chr12 627812 627908 -143654581 + L1ME4a LINE L1 5986 6086 -35 2067 131 3 0 chr12 627908 628198 -143654291 - AluJb SINE Alu -21 291 1 365 205 71 54 chr12 628198 628213 -143654276 + L1ME4a LINE L1 6086 6099 -22 1982 107 43 7 chr12 628298 628578 -143653911 + AluSq SINE Alu 1 290 -23 312 292 111 21 chr12 628742 628886 -143653603 - MIR SINE MIR -76 186 30 2053 115 10 13 chr12 629470 629775 -143652714 + AluSx SINE Alu 1 304 -8 414 0 0 0 chr12 629852 629898 -143652591 + (TG)n Simple_repeat Simple_repeat 2 47 0 829 181 18 41 chr12 629898 630058 -143652431 - AluJb SINE Alu -29 283 126 32 43 0 0 chr12 630415 630461 -143652028 + AT_rich Low_complexity Low_complexity 1 46 0 2467 61 3 10 chr12 630463 630774 -143651715 + AluY SINE Alu 1 309 -2 2127 112 0 44 chr12 630779 631100 -143651389 + AluSx SINE Alu 1 307 -5 4023 171 105 20 chr12 631350 632027 -143650462 - L1MB8 LINE L1 -15 6163 5545 1787 179 3 16 chr12 632027 632334 -143650155 - AluJo SINE Alu -9 303 1 4023 171 105 20 chr12 632334 632856 -143649633 - L1MB8 LINE L1 -633 5545 5069 2249 133 0 0 chr12 632856 633158 -143649331 - AluSx SINE Alu -10 302 1 4023 171 105 20 chr12 633158 633439 -143649050 - L1MB8 LINE L1 -1109 5069 4542 2459 75 0 0 chr12 633553 633860 -143648629 + AluSx SINE Alu 1 307 -5 292 287 49 25 chr12 633973 634095 -143648394 + HAL1 LINE L1 338 462 -2045 403 276 60 0 chr12 634095 634211 -143648278 + MER5C DNA MER1_type 1 123 -201 182 231 0 0 chr12 634372 634411 -143648078 + MER5C DNA MER1_type 286 324 0 234 306 47 0 chr12 634467 634552 -143647937 + HAL1 LINE L1 549 637 -1870 978 120 56 0 chr12 634624 634766 -143647723 + FRAM SINE Alu 14 163 -13 226 298 0 50 chr12 634781 634902 -143647587 + HAL1 LINE L1 684 798 -1709 349 222 228 26 chr12 635032 635221 -143647268 + HAL1 LINE L1 795 1021 -1486 32 26 0 0 chr12 635227 635266 -143647223 + AT_rich Low_complexity Low_complexity 1 39 0 687 121 0 0 chr12 635269 635368 -143647121 - AluJ/FLAM SINE Alu -212 100 2 1089 271 155 25 chr12 635382 636009 -143646480 + HAL1 LINE L1 1032 1739 -768 237 239 15 0 chr12 636243 636310 -143646179 + MLT1K LTR MaLR 511 578 -10 213 194 311 19 chr12 636324 636427 -143646062 - MER5A DNA MER1_type -13 176 44 * 422 258 200 0 chr12 636339 636459 -143646030 + MER5A DNA MER1_type 46 189 0 267 31 0 0 chr12 636549 636581 -143645908 + (ATG)n Simple_repeat Simple_repeat 3 34 0 1068 228 57 24 chr12 637559 637805 -143644684 - MIR SINE MIR 0 262 9 341 233 105 12 chr12 638057 638143 -143644346 + MIR3 SINE MIR 74 167 -41 2608 58 0 7 chr12 638687 638997 -143643492 + AluY SINE Alu 3 310 -1 1041 99 0 21 chr12 639019 639161 -143643328 + AluJb SINE Alu 163 301 -11 183 284 119 64 chr12 639169 639278 -143643211 - MIR3 SINE MIR -93 115 1 2441 92 0 3 chr12 639924 640227 -143642262 - AluSq SINE Alu -6 307 6 2004 138 33 13 chr12 640359 640833 -143641656 - AluSx SINE Alu 0 312 1 206 269 0 19 chr12 640858 640910 -143641579 - MIR3 SINE MIR -23 185 135 1079 262 120 18 chr12 641053 641495 -143640994 + MLT1J LTR MaLR 18 504 -7 231 259 259 19 chr12 642168 642330 -143640159 - MIR3 SINE MIR -3 205 5 2146 132 0 3 chr12 642523 642819 -143639670 + AluSx SINE Alu 1 295 -17 2589 64 0 6 chr12 642821 643134 -143639355 + AluY SINE Alu 1 311 0 191 244 56 78 chr12 643228 643318 -143639171 - MIR SINE MIR -102 160 73 2261 92 3 3 chr12 644516 644800 -143637689 + AluSp SINE Alu 13 296 -17 2406 75 7 0 chr12 646121 646413 -143636076 + AluSx SINE Alu 1 294 -18 351 254 6 51 chr12 647410 647587 -143634902 + G-rich Low_complexity Low_complexity 2 170 0 331 327 19 9 chr12 647655 647762 -143634727 - MIR3 SINE MIR -6 202 95 594 235 95 34 chr12 648976 649155 -143633334 + MIR SINE MIR 3 192 -70 210 339 0 0 chr12 649475 649531 -143632958 + MIR3 SINE MIR 104 159 -49 2249 106 0 0 chr12 649815 650127 -143632362 - AluSx SINE Alu 0 312 1 1983 162 6 19 chr12 650365 650730 -143631759 + AluJo SINE Alu 3 363 0 2337 105 7 0 chr12 650738 651043 -143631446 + AluSc SINE Alu 3 309 0 2044 122 31 0 chr12 651049 651337 -143631152 + AluSg1 SINE Alu 1 297 -12 2418 67 40 3 chr12 651337 651637 -143630852 + AluY SINE Alu 1 311 0 25 0 0 0 chr12 651979 652004 -143630485 + AT_rich Low_complexity Low_complexity 1 25 0 2167 140 0 6 chr12 652949 653263 -143629226 + AluJo SINE Alu 1 312 0 202 281 0 31 chr12 653648 653712 -143628777 - L2 LINE L2 -100 3213 3152 2312 98 3 3 chr12 653724 654021 -143628468 + AluSx SINE Alu 1 297 -15 2245 99 24 0 chr12 654024 654318 -143628171 + AluSq SINE Alu 1 301 -12 356 326 96 53 chr12 654370 654783 -143627706 - L2 LINE L2 -237 3035 2608 767 223 55 103 chr12 655812 656006 -143626483 + MIR SINE MIR 3 182 -80 1743 193 3 0 chr12 656006 656291 -143626198 + AluJo SINE Alu 6 291 -21 767 223 55 103 chr12 656291 656369 -143626120 + MIR SINE MIR 182 262 0 226 255 32 43 chr12 656654 656748 -143625741 - L2 LINE L2 -211 3061 2969 1023 133 60 0 chr12 656996 657147 -143625342 + AluSg/x SINE Alu 136 295 -15 4014 141 14 14 chr12 657739 658372 -143624117 + MER41B LTR ERV1 1 633 -2 741 187 21 67 chr12 658386 658578 -143623911 - MIR SINE MIR -62 146 8 1279 129 58 45 chr12 658702 658806 -143623683 - MER30 DNA MER1_type 0 230 129 2308 89 24 0 chr12 658806 659097 -143623392 + AluSp SINE Alu 1 298 -15 234 0 0 0 chr12 659097 659123 -143623366 + (TA)n Simple_repeat Simple_repeat 2 27 0 1279 129 58 45 chr12 659123 659241 -143623248 - MER30 DNA MER1_type -100 130 4 2214 102 3 10 chr12 659535 659562 -143622927 - AluSx SINE Alu 0 312 286 262 0 0 0 chr12 659562 659591 -143622898 + (TTTTG)n Simple_repeat Simple_repeat 2 125 0 2214 102 3 10 chr12 659591 659877 -143622612 - AluSx SINE Alu -26 286 1 2333 61 3 10 chr12 660544 660861 -143621628 - AluSc SINE Alu 0 309 1 208 263 23 128 chr12 661611 661744 -143620745 + L2 LINE L2 139 257 -3057 2078 122 7 7 chr12 662416 662711 -143619778 + AluSx SINE Alu 1 295 -17 2019 141 14 0 chr12 662734 663024 -143619465 + AluSx SINE Alu 1 294 -18 2175 95 44 3 chr12 663463 663759 -143618730 - AluSg SINE Alu -2 308 1 619 204 0 53 chr12 664111 664243 -143618246 - FLAM_C SINE Alu -16 127 3 2349 94 10 0 chr12 664254 664551 -143617938 - AluSq SINE Alu -13 300 1 2581 187 20 25 chr12 664580 664993 -143617496 + L1MB4 LINE L1 4789 5202 -978 2179 110 0 7 chr12 664993 665293 -143617196 + AluSx SINE Alu 1 298 -14 2372 106 3 0 chr12 665295 665641 -143616848 + AluSp SINE Alu 1 313 0 2581 187 20 25 chr12 665641 666269 -143616220 + L1MB4 LINE L1 5203 5830 -350 2369 96 0 0 chr12 666269 666560 -143615929 + AluSg SINE Alu 1 291 -19 2390 100 0 3 chr12 666560 666871 -143615618 + AluSg SINE Alu 1 310 0 2617 47 0 0 chr12 667615 667915 -143614574 - AluY SINE Alu -11 300 1 351 265 17 0 chr12 668108 668225 -143614264 + L1MC4a LINE L1 5753 5871 -1937 842 195 185 25 chr12 668472 668672 -143613817 - MIR SINE MIR -23 239 8 270 314 10 39 chr12 669452 669554 -143612935 - MIR3 SINE MIR -2 206 108 1437 156 117 12 chr12 669718 669998 -143612491 - AluSx SINE Alu 0 307 1 2438 49 0 16 chr12 670759 671063 -143611426 + AluY SINE Alu 1 299 -12 407 271 62 16 chr12 671236 671365 -143611124 + MIR SINE MIR 20 154 -108 2033 89 11 0 chr12 671458 671727 -143610762 - AluSq SINE Alu -40 273 2 266 192 29 70 chr12 672053 672225 -143610264 + (CCCG)n Simple_repeat Simple_repeat 4 168 0 250 181 157 72 chr12 672721 672804 -143609685 - MIR SINE MIR -70 192 103 180 278 150 38 chr12 673094 673227 -143609262 + L2 LINE L2 3121 3268 -45 284 236 0 0 chr12 673359 673414 -143609075 - MIR SINE MIR 0 262 208 453 194 218 8 chr12 673422 673546 -143608943 - MER5A DNA MER1_type 0 189 40 419 205 41 0 chr12 673554 673649 -143608840 - MIR SINE MIR -50 212 114 269 250 27 71 chr12 674130 674242 -143608247 - L2 LINE L2 -613 2701 2595 523 269 0 8 chr12 674413 674532 -143607957 + MIR SINE MIR 33 150 -112 282 243 96 64 chr12 674680 674853 -143607636 - MIR SINE MIR -62 146 19 726 185 147 13 chr12 676906 677063 -143605426 - MER5A DNA MER1_type -11 178 1 251 267 158 0 chr12 677087 677207 -143605282 + MIR SINE MIR 47 185 -77 2240 95 3 17 chr12 677282 677578 -143604911 - AluSq SINE Alu -21 292 1 198 268 0 0 chr12 677664 677705 -143604784 + MIR SINE MIR 107 147 -61 214 392 75 22 chr12 677945 678172 -143604317 + L2 LINE L2 2807 3045 -227 513 47 0 0 chr12 678172 678236 -143604253 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 2514 72 13 0 chr12 678243 678547 -143603942 - AluSx SINE Alu -4 308 1 325 175 16 16 chr12 678690 678753 -143603736 + L1MC4 LINE L1 6641 6703 -1339 808 222 124 29 chr12 678825 679275 -143603214 - L1ME4a LINE L1 -1 6120 5628 1788 133 9 76 chr12 679281 679598 -143602891 - AluSx SINE Alu -15 297 2 1430 134 28 12 chr12 679618 679872 -143602617 + AluSg SINE Alu 1 258 -52 1965 118 61 0 chr12 680029 680309 -143602180 + AluSc SINE Alu 13 309 0 1820 158 0 17 chr12 680342 680640 -143601849 - AluJb SINE Alu -8 304 12 207 96 58 0 chr12 681563 681615 -143600874 + (TA)n Simple_repeat Simple_repeat 2 56 0 5477 184 48 50 chr12 681636 681893 -143600596 - L1MC1 LINE L1 -6 6607 6351 935 18 0 9 chr12 681893 682007 -143600482 + (CATAG)n Simple_repeat Simple_repeat 2 114 0 5477 184 48 50 chr12 682007 682349 -143600140 - L1MC1 LINE L1 -262 6351 6010 2461 89 0 19 chr12 682349 682665 -143599824 + AluSx SINE Alu 1 310 -2 5477 184 48 50 chr12 682665 683044 -143599445 - L1MC1 LINE L1 -603 6010 5632 2345 93 0 3 chr12 683044 683346 -143599143 - AluSg SINE Alu -9 301 1 5477 184 48 50 chr12 683346 683891 -143598598 - L1MC1 LINE L1 -981 5632 5088 2356 95 0 0 chr12 683891 684186 -143598303 - AluSg SINE Alu -15 295 1 5477 184 48 50 chr12 684186 684269 -143598220 - L1MC1 LINE L1 -1525 5088 5006 2213 93 0 4 chr12 684269 684571 -143597918 - AluSc SINE Alu 0 302 2 5477 184 48 50 chr12 684571 684724 -143597765 - L1MC1 LINE L1 -1607 5006 4854 2348 102 0 0 chr12 684724 685018 -143597471 - AluSx SINE Alu -12 300 7 5477 184 48 50 chr12 685018 685734 -143596755 - L1MC1 LINE L1 -1759 4854 4131 2235 120 10 0 chr12 685734 686042 -143596447 - AluSp SINE Alu -1 312 2 5477 184 48 50 chr12 686042 686112 -143596377 - L1MC1 LINE L1 -2482 4131 4062 2389 87 13 0 chr12 686112 686412 -143596077 - AluSp SINE Alu -9 304 1 1620 186 14 24 chr12 686442 686738 -143595751 - AluJo SINE Alu -19 293 1 596 217 38 11 chr12 686739 686922 -143595567 - L1MC1 LINE L1 -3947 2479 2354 8249 160 102 11 chr12 687148 688840 -143593649 + L1MCa LINE L1 7 1853 -4573 539 167 0 0 chr12 688840 688924 -143593565 + AluS SINE Alu 1 84 -229 507 186 24 8 chr12 688925 689049 -143593440 + L1MCa LINE L1 1841 1966 -4460 2504 90 3 0 chr12 689057 689369 -143593120 + AluSq SINE Alu 1 313 0 212 186 23 0 chr12 689519 689562 -143592927 + G-rich Low_complexity Low_complexity 5 48 0 205 255 0 61 chr12 689574 689672 -143592817 + C-rich Low_complexity Low_complexity 2 93 0 301 207 0 17 chr12 690169 690227 -143592262 + L1MCa LINE L1 2533 2589 -4018 1578 193 14 24 chr12 690228 690524 -143591965 + AluJo SINE Alu 1 293 -19 2265 100 13 3 chr12 690554 690854 -143591635 + AluSx SINE Alu 1 303 -9 241 244 67 25 chr12 690855 690974 -143591515 + L1M LINE L1 5301 5424 -738 1949 159 3 10 chr12 691484 691779 -143590710 - AluJo SINE Alu -19 293 1 1103 287 58 16 chr12 692245 692625 -143589864 - L2 LINE L2 0 3313 2918 225 65 0 0 chr12 692801 692832 -143589657 + (GA)n Simple_repeat Simple_repeat 2 32 0 184 179 0 0 chr12 695620 695648 -143586841 - MIR SINE MIR -28 234 207 1131 74 0 0 chr12 695648 695783 -143586706 - AluSg/x SINE Alu -18 292 158 794 177 0 0 chr12 695968 696092 -143586397 + FLAM_C SINE Alu 1 124 -9 1736 156 7 42 chr12 696098 696406 -143586083 + AluJo SINE Alu 1 297 -15 1913 154 0 35 chr12 696837 697156 -143585333 - AluJb SINE Alu -4 308 1 954 197 13 70 chr12 697157 697385 -143585104 - MER58A DNA MER1_type -9 215 1 442 285 82 13 chr12 697904 698062 -143584427 + MIR3 SINE MIR 34 202 -6 2033 115 41 7 chr12 698073 698368 -143584121 + AluSx SINE Alu 1 305 -7 398 274 8 0 chr12 698824 698941 -143583548 + MER3 DNA MER1_type 46 163 -46 957 169 12 24 chr12 698953 699119 -143583370 - FRAM SINE Alu -2 164 1 2285 111 0 13 chr12 699136 699443 -143583046 - AluSx SINE Alu -9 303 1 2377 71 3 7 chr12 699771 700066 -143582423 + AluSg SINE Alu 1 294 -16 2008 98 3 57 chr12 700480 700777 -143581712 + AluSq SINE Alu 1 281 -32 834 106 0 0 chr12 700783 700906 -143581583 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 1598 187 91 59 chr12 701015 701245 -143581244 + L1MC5 LINE L1 7271 7492 -469 1498 167 33 60 chr12 701245 701380 -143581109 + AluJo SINE Alu 3 140 -172 2158 130 3 0 chr12 701380 701672 -143580817 + AluSq SINE Alu 1 293 -20 1498 167 33 60 chr12 701672 701835 -143580654 + AluJo SINE Alu 140 293 -19 1598 187 91 59 chr12 701835 702005 -143580484 + L1MC5 LINE L1 7492 7655 -306 2424 87 3 0 chr12 702005 702314 -143580175 - AluY SINE Alu -1 310 1 1598 187 91 59 chr12 702314 702537 -143579952 + L1MC5 LINE L1 7655 7915 -46 372 266 222 11 chr12 703011 703190 -143579299 - MIR SINE MIR -46 216 6 192 77 0 0 chr12 703219 703245 -143579244 + (CA)n Simple_repeat Simple_repeat 1 26 0 417 245 125 87 chr12 703308 703353 -143579136 + MIR SINE MIR 35 77 -185 279 0 0 0 chr12 703353 703384 -143579105 + (TG)n Simple_repeat Simple_repeat 1 31 0 1448 137 34 0 chr12 703385 703619 -143578870 - L1MC1 LINE L1 -3 6330 6089 417 245 125 87 chr12 703619 703779 -143578710 + MIR SINE MIR 76 250 -12 2501 78 0 0 chr12 703944 704240 -143578249 + AluSq SINE Alu 1 296 -17 245 227 27 80 chr12 705092 705167 -143577322 + MIR SINE MIR 80 150 -112 353 222 57 45 chr12 705194 705296 -143577193 - L1ME4a LINE L1 0 6121 6015 1452 153 122 49 chr12 705296 705583 -143576906 + AluJb SINE Alu 1 308 -4 353 222 57 45 chr12 705583 705656 -143576833 - L1ME4a LINE L1 -106 6015 5944 2256 119 7 0 chr12 705662 705972 -143576517 + AluSx SINE Alu 1 312 0 635 188 132 0 chr12 706037 706181 -143576308 - MER45A DNA AcHobo -14 164 2 645 241 86 26 chr12 706198 706430 -143576059 - MIR SINE MIR 0 262 17 1307 80 0 0 chr12 706458 706620 -143575869 - AluY SINE Alu -14 297 136 386 241 52 43 chr12 706635 706751 -143575738 - L1ME4a LINE L1 -169 5952 5836 252 0 0 0 chr12 707134 707162 -143575327 + (CA)n Simple_repeat Simple_repeat 2 29 0 258 286 39 0 chr12 707278 707355 -143575134 + MIR SINE MIR 87 166 -96 458 138 21 28 chr12 707921 708156 -143574333 + AluJo SINE Alu 1 301 -11 2227 125 0 19 chr12 708156 708475 -143574014 + AluSp SINE Alu 1 313 0 2465 91 3 0 chr12 708485 708792 -143573697 + AluSg SINE Alu 1 308 -2 240 271 73 0 chr12 709685 709781 -143572708 - L1ME4a LINE L1 -4 6117 6015 487 125 0 0 chr12 710146 710226 -143572263 + FLAM_A SINE Alu 63 142 0 31 44 0 0 chr12 710228 710273 -143572216 + AT_rich Low_complexity Low_complexity 1 45 0 1634 114 57 0 chr12 710410 710638 -143571851 + AluSq SINE Alu 64 304 -9 732 242 47 30 chr12 710642 710939 -143571550 + L1ME LINE L1 5305 5606 -556 2226 69 3 49 chr12 710950 711255 -143571234 + AluY SINE Alu 1 291 -20 1310 93 0 0 chr12 711255 711417 -143571072 + AluSg/x SINE Alu 132 293 -17 235 357 0 0 chr12 711429 711541 -143570948 + L1ME LINE L1 5746 5857 -313 1109 287 41 53 chr12 711727 711762 -143570727 + MLT1I LTR MaLR 1 35 -374 2233 99 3 13 chr12 711762 712065 -143570424 + AluSc SINE Alu 1 300 -9 1109 287 41 53 chr12 712065 712443 -143570046 + MLT1I LTR MaLR 35 409 0 2463 94 0 0 chr12 712614 712923 -143569566 + AluSx SINE Alu 1 309 -3 2316 98 3 0 chr12 713656 713953 -143568536 + AluSp SINE Alu 1 298 -15 234 0 0 0 chr12 714121 714147 -143568342 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 426 233 41 48 chr12 714296 714442 -143568047 - MER103 DNA DNA -18 148 4 748 148 9 9 chr12 715048 715163 -143567326 + FLAM_C SINE Alu 1 115 -18 251 71 24 0 chr12 715163 715205 -143567284 + (CA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr12 715386 715408 -143567081 + AT_rich Low_complexity Low_complexity 1 22 0 426 207 0 0 chr12 715511 715598 -143566891 - MER113 DNA MER1_type? -434 87 1 200 35 35 0 chr12 715687 715716 -143566773 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1118 95 0 0 chr12 715718 715855 -143566634 - FRAM SINE Alu -39 137 1 2599 59 3 0 chr12 716416 716723 -143565766 - AluY SINE Alu -3 308 1 3712 107 59 37 chr12 717687 717722 -143564767 - MER4B LTR ERV1 0 610 577 2394 77 20 0 chr12 717722 718021 -143564468 + AluSg SINE Alu 1 305 -5 3712 107 59 37 chr12 718021 718581 -143563908 - MER4B LTR ERV1 -33 577 2 2331 131 32 61 chr12 718650 718951 -143563538 - LTR23 LTR ERV1 -5 432 147 2406 93 0 3 chr12 718951 719263 -143563226 + AluY SINE Alu 1 311 0 2331 131 32 61 chr12 719263 719403 -143563086 - LTR23 LTR ERV1 -290 147 4 2017 110 7 7 chr12 719452 719751 -143562738 + AluSp SINE Alu 1 299 -14 825 182 150 96 chr12 720079 720390 -143562099 + MER51A LTR ERV1 328 640 0 1931 86 104 11 chr12 720449 720767 -143561722 - AluSp SINE Alu 0 313 5 3241 125 54 40 chr12 720830 721179 -143561310 + MER4A LTR ERV1 1 363 -237 1934 108 9 97 chr12 721179 721521 -143560968 + AluSq SINE Alu 2 313 0 3241 125 54 40 chr12 721521 721763 -143560726 + MER4A LTR ERV1 363 600 0 2561 63 3 0 chr12 721823 722125 -143560364 + AluY SINE Alu 1 303 -8 1297 203 96 4 chr12 722153 722414 -143560075 - AluJb SINE Alu -27 285 1 262 170 0 0 chr12 722414 722467 -143560022 - LTR49-int LTR ERV1 -3879 2879 2827 471 189 66 19 chr12 722573 722679 -143559810 - LTR49-int LTR ERV1 -2867 3464 3354 529 177 0 10 chr12 722736 722832 -143559657 - LTR49-int LTR ERV1 -2991 3340 3246 263 125 21 0 chr12 722865 722913 -143559576 - LTR49-int LTR ERV1 -3059 3272 3224 1105 140 0 48 chr12 722916 723102 -143559387 - AluSg/x SINE Alu -3 307 131 417 179 0 0 chr12 723102 723169 -143559320 - AluJ/FLAM SINE Alu -245 67 1 2226 136 43 111 chr12 723169 723468 -143559021 - LTR49-int LTR ERV1 -3099 3232 2915 2332 88 7 0 chr12 723468 723762 -143558727 + AluSp SINE Alu 2 297 -16 2226 136 43 111 chr12 723762 723797 -143558692 - LTR49-int LTR ERV1 -3416 2915 2879 2016 152 7 0 chr12 723797 724093 -143558396 + AluSx SINE Alu 1 298 -14 2226 136 43 111 chr12 724093 724309 -143558180 - LTR49-int LTR ERV1 -3452 2879 2718 237 217 0 0 chr12 724309 724355 -143558134 + MER54B LTR ERVL 746 791 -2 237 218 0 55 chr12 724355 724406 -143558083 - MER31A LTR ERV1 -401 84 37 2603 137 62 19 chr12 724406 724872 -143557617 + MER66B LTR ERV1 1 486 0 3006 207 46 31 chr12 724872 725586 -143556903 - LTR49-int LTR ERV1 -3674 2657 751 525 259 0 0 chr12 725586 725760 -143556729 + (TG)n Simple_repeat Simple_repeat 1 174 0 1969 158 31 74 chr12 725783 726231 -143556258 - LTR49-int LTR ERV1 -4346 1985 1557 484 308 104 37 chr12 726506 726834 -143555655 - LTR49-int LTR ERV1 -6063 695 346 671 165 33 8 chr12 727231 727352 -143555137 - LTR23 LTR ERV1 -21 416 293 917 144 0 7 chr12 727391 727530 -143554959 - AluJb SINE Alu -171 141 4 1056 98 22 120 chr12 727616 727841 -143554648 - LTR23 LTR ERV1 -141 296 94 4975 38 8 0 chr12 728322 728908 -143553581 + LTR10C LTR ERV1 1 591 0 1884 128 23 0 chr12 729319 729607 -143552882 + AluJo SINE Alu 12 305 0 881 200 0 0 chr12 729607 729757 -143552732 + AluJo/FRAM SINE Alu 133 282 -30 2370 106 0 0 chr12 729799 730101 -143552388 + AluSx SINE Alu 1 302 -10 202 139 28 0 chr12 730275 730311 -143552178 + GA-rich Low_complexity Low_complexity 2 38 0 219 225 79 45 chr12 730525 730614 -143551875 - MIR SINE MIR -115 147 56 497 228 79 0 chr12 730719 730846 -143551643 - MER5A DNA MER1_type -5 184 48 2814 177 46 41 chr12 731116 731639 -143550850 - MER82 DNA MER2_type 0 653 125 2574 55 3 0 chr12 731639 731946 -143550543 + AluY SINE Alu 1 308 -3 2814 177 46 41 chr12 731946 732011 -143550478 - MER82 DNA MER2_type -528 125 62 36 0 0 0 chr12 732155 732191 -143550298 + AT_rich Low_complexity Low_complexity 1 36 0 1862 151 3 13 chr12 732728 733039 -143549450 + AluJo SINE Alu 1 308 -4 2006 73 98 4 chr12 733708 733982 -143548507 - AluSx SINE Alu -1 311 12 235 54 89 71 chr12 733982 734038 -143548451 + L1MB2 LINE L1 6113 6169 -2 2202 123 0 7 chr12 734638 734946 -143547543 + AluSx SINE Alu 1 306 -6 718 138 7 7 chr12 735390 735528 -143546961 + CT-rich Low_complexity Low_complexity 3 140 0 756 208 0 0 chr12 735583 735713 -143546776 - FLAM_A SINE Alu -2 131 2 2121 140 0 10 chr12 735725 736039 -143546450 - AluSx SINE Alu -1 311 1 4288 168 32 64 chr12 736039 736902 -143545587 - L1MB4 LINE L1 -39 6141 5252 221 0 35 0 chr12 736902 736931 -143545558 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4288 168 32 64 chr12 736931 737097 -143545392 - L1MB4 LINE L1 -928 5252 5082 2378 76 3 7 chr12 737097 737399 -143545090 - AluSg SINE Alu -9 301 1 4288 168 32 64 chr12 737399 737652 -143544837 - L1MB4 LINE L1 -1098 5082 4888 23 0 0 0 chr12 737909 737932 -143544557 + AT_rich Low_complexity Low_complexity 1 23 0 2366 97 7 0 chr12 737997 738307 -143544182 - AluSx SINE Alu 0 312 1 3537 25 7 0 chr12 738326 738734 -143543755 - L1PA5 LINE L1 -1 6153 5743 388 263 69 38 chr12 738858 739018 -143543471 + LTR16C LTR ERVL 233 397 -94 1449 150 0 67 chr12 739052 739160 -143543329 - AluJb SINE Alu -76 236 122 2386 69 3 0 chr12 739160 739448 -143543041 - AluY SINE Alu -22 289 1 1449 150 0 67 chr12 739448 739592 -143542897 - AluJb SINE Alu -190 122 1 590 197 51 0 chr12 739923 740040 -143542449 - L1MB7 LINE L1 -43 6141 6019 1286 201 46 111 chr12 740042 740456 -143542033 - MER21B LTR ERV1 -459 404 18 2350 100 0 19 chr12 740456 740767 -143541722 - AluSg SINE Alu -5 305 1 270 0 0 0 chr12 740767 740797 -143541692 + (T)n Simple_repeat Simple_repeat 1 30 0 203 231 15 15 chr12 740808 740873 -143541616 + T-rich Low_complexity Low_complexity 2 66 0 25 0 0 0 chr12 740874 740899 -143541590 + AT_rich Low_complexity Low_complexity 1 25 0 2387 102 0 10 chr12 740901 741215 -143541274 - AluSx SINE Alu -1 311 1 1111 110 23 64 chr12 741227 741338 -143541151 - L1MA4 LINE L1 -16 6284 6185 2002 157 0 0 chr12 741338 741643 -143540846 - AluJo SINE Alu -3 309 5 1111 110 23 64 chr12 741643 741749 -143540740 - L1MA4 LINE L1 -115 6185 6076 1209 190 0 74 chr12 741769 742014 -143540475 - L1MB7 LINE L1 -352 5832 5620 2411 84 0 3 chr12 742014 742313 -143540176 - AluSx SINE Alu -14 298 1 1209 190 0 74 chr12 742313 742379 -143540110 - L1MB7 LINE L1 -564 5620 5551 2853 125 29 7 chr12 742407 742854 -143539635 - MER4C LTR ERV1 -1 464 8 2345 84 3 7 chr12 743241 743538 -143538951 - AluSg SINE Alu -14 296 1 290 246 0 0 chr12 743660 743717 -143538772 - MLT1K LTR MaLR -4 584 528 195 42 0 0 chr12 743742 743766 -143538723 + (A)n Simple_repeat Simple_repeat 1 24 0 321 291 0 0 chr12 743878 743957 -143538532 - MLT1K LTR MaLR -178 410 332 296 77 0 0 chr12 744546 744585 -143537904 - MSTB LTR MaLR 0 426 388 2364 98 0 0 chr12 744588 744884 -143537605 + AluSg SINE Alu 1 296 -14 849 185 17 28 chr12 744892 745070 -143537419 + AluJb SINE Alu 137 312 0 1467 175 105 5 chr12 745074 745403 -143537086 - MSTB LTR MaLR -31 426 4 819 161 0 0 chr12 745483 745601 -143536888 - FLAM_C SINE Alu -25 118 1 2539 70 0 0 chr12 745603 745904 -143536585 - AluSx SINE Alu -11 301 1 1652 165 0 55 chr12 745904 746232 -143536257 - AluJb SINE Alu 0 312 3 644 251 110 57 chr12 746309 746400 -143536089 + MER115 DNA AcHobo 410 495 -198 1984 63 4 0 chr12 746400 746638 -143535851 - AluY SINE Alu -17 294 56 644 251 110 57 chr12 746638 746809 -143535680 + MER115 DNA AcHobo 495 686 -7 181 147 0 0 chr12 747284 747318 -143535171 - MIR SINE MIR -128 134 101 2326 88 0 0 chr12 747344 747638 -143534851 - AluSc SINE Alu -14 295 2 1876 172 0 0 chr12 747643 747933 -143534556 - AluJb SINE Alu -20 292 3 1172 80 73 0 chr12 747944 748094 -143534395 - AluSg/x SINE Alu -18 294 134 2271 108 0 3 chr12 748094 748389 -143534100 - AluSx SINE Alu -18 294 1 345 174 0 111 chr12 748466 748580 -143533909 - MER45A DNA AcHobo 0 178 81 437 299 113 59 chr12 748828 748854 -143533635 + L2 LINE L2 1528 1551 -1763 714 216 22 50 chr12 748854 748935 -143533554 - MER69A DNA AcHobo -2349 177 95 2190 88 51 0 chr12 748935 749230 -143533259 + AluY SINE Alu 1 310 -1 714 216 22 50 chr12 749230 749329 -143533160 - MER69A DNA AcHobo -2431 95 2 437 299 113 59 chr12 749329 749584 -143532905 + L2 LINE L2 1551 1791 -1523 1718 132 99 185 chr12 749584 750132 -143532357 - LTR36 LTR ERV1 -1 610 127 2209 38 48 31 chr12 750132 750421 -143532068 - AluY SINE Alu -6 305 12 1718 132 99 185 chr12 750421 750538 -143531951 - LTR36 LTR ERV1 -484 127 2 437 299 113 59 chr12 750538 750813 -143531676 + L2 LINE L2 1791 2115 -1199 1828 124 96 37 chr12 750859 751213 -143531276 - THE1C LTR MaLR 0 375 1 2119 112 0 30 chr12 751230 751533 -143530956 - AluSx SINE Alu -18 294 1 736 210 27 58 chr12 751623 751880 -143530609 - L2 LINE L2 -378 2936 2688 2305 113 3 0 chr12 751958 752268 -143530221 + AluSp SINE Alu 1 311 -2 1223 93 27 22 chr12 752268 752594 -143529895 + AluSg/x SINE Alu 129 458 0 1117 100 6 6 chr12 752600 752780 -143529709 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 25 51 0 0 chr12 753348 753387 -143529102 + AT_rich Low_complexity Low_complexity 1 39 0 393 275 92 56 chr12 753595 753967 -143528522 + L1ME LINE L1 4686 5080 -1066 2302 143 37 8 chr12 753967 754344 -143528145 + MLT1B LTR MaLR 1 388 -2 393 275 92 56 chr12 754344 754436 -143528053 + L1ME LINE L1 5080 5167 -979 356 248 168 8 chr12 754586 754711 -143527778 - Charlie8 DNA MER1_type -2272 145 1 340 189 81 18 chr12 755356 755467 -143527022 + L1ME4a LINE L1 6004 6121 0 655 277 33 28 chr12 756177 756390 -143526099 - MIR SINE MIR -44 218 5 352 185 62 0 chr12 756806 756887 -143525602 + MIR SINE MIR 156 241 -21 557 273 95 63 chr12 757536 757884 -143524605 - LTR16A LTR ERVL 0 450 92 477 232 116 0 chr12 757993 758105 -143524384 - AluJo/FRAM SINE Alu -17 295 171 517 135 0 0 chr12 758105 758179 -143524310 + AluJb SINE Alu 192 265 -47 862 215 11 0 chr12 758901 759087 -143523402 - MER53 DNA DNA -1 188 1 985 141 37 0 chr12 759097 759260 -143523229 - MER3 DNA MER1_type -86 123 2 390 145 0 0 chr12 760024 760086 -143522403 + FLAM SINE Alu 71 132 -1 848 250 43 71 chr12 760154 760369 -143522120 + L1ME LINE L1 5360 5559 -562 2372 45 41 10 chr12 760369 760660 -143521829 - AluY SINE Alu -11 300 1 848 250 43 71 chr12 760660 760791 -143521698 + L1ME LINE L1 5559 5692 -429 2251 140 88 10 chr12 760811 761196 -143521293 - MSTA LTR MaLR -1 427 13 328 130 0 0 chr12 761196 761242 -143521247 - MSTA LTR MaLR -382 46 1 3638 228 50 50 chr12 761623 761703 -143520786 + L1MEc LINE L1 35 113 -6092 1599 67 5 14 chr12 761703 761913 -143520576 - AluY SINE Alu -21 290 83 3638 228 50 50 chr12 761913 762763 -143519726 + L1MEc LINE L1 113 961 -5244 2485 80 3 0 chr12 762763 763065 -143519424 + AluSp SINE Alu 1 303 -10 3638 228 50 50 chr12 763065 763148 -143519341 + L1MEc LINE L1 961 1008 -5197 1280 54 0 0 chr12 763148 763296 -143519193 + L1PA5 LINE L1 5998 6145 -9 3638 228 50 50 chr12 763296 763320 -143519169 + L1MEc LINE L1 1008 1030 -5175 270 229 0 0 chr12 763329 763390 -143519099 + L1MEc LINE L1 1034 1094 -5302 2220 149 65 88 chr12 763392 763667 -143518822 - L1MB8 LINE L1 -307 5871 5591 1526 173 39 14 chr12 763667 763950 -143518539 - AluJb SINE Alu -18 294 5 2220 149 65 88 chr12 763950 764083 -143518406 - L1MB8 LINE L1 -587 5591 5475 2126 99 60 0 chr12 764083 764367 -143518122 - AluSx SINE Alu -11 301 1 2220 149 65 88 chr12 764367 764481 -143518008 - L1MB8 LINE L1 -703 5475 5360 249 33 0 0 chr12 764502 764532 -143517957 + (TG)n Simple_repeat Simple_repeat 2 31 0 793 118 109 0 chr12 764537 764647 -143517842 - FRAM SINE Alu -22 154 33 2448 191 41 45 chr12 764648 764876 -143517613 - L1MB8 LINE L1 -1064 5082 4855 2377 75 0 3 chr12 764876 765170 -143517319 - AluY SINE Alu -18 293 1 2448 191 41 45 chr12 765170 765569 -143516920 - L1MB8 LINE L1 -1291 4855 4457 308 111 32 63 chr12 765573 765636 -143516853 - HY1 scRNA scRNA -1 111 51 370 183 0 0 chr12 765676 765758 -143516731 - L1MB8 LINE L1 -1688 4458 4377 1846 129 41 0 chr12 765763 766066 -143516423 + AluSx SINE Alu 1 314 0 297 217 29 152 chr12 766091 766229 -143516260 + MIR3 SINE MIR 88 208 0 1448 280 54 20 chr12 766388 766848 -143515641 - L3 LINE CR1 -5 1572 1097 1520 173 67 35 chr12 766858 767141 -143515348 + AluJb SINE Alu 1 292 -20 970 130 0 15 chr12 767161 767292 -143515197 + AluJo SINE Alu 1 129 -173 198 0 0 0 chr12 767343 767365 -143515124 + (T)n Simple_repeat Simple_repeat 1 22 0 474 303 47 14 chr12 767498 767771 -143514718 - L3 LINE CR1 -870 707 369 763 257 72 0 chr12 767865 768087 -143514402 - MIR SINE MIR 0 262 25 951 148 0 0 chr12 768607 768749 -143513740 + AluJo SINE Alu 137 278 -34 222 37 0 0 chr12 768762 768789 -143513700 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 29 47 0 0 chr12 769763 769806 -143512683 + AT_rich Low_complexity Low_complexity 1 43 0 1754 150 20 23 chr12 769808 770114 -143512375 - AluSx SINE Alu -7 305 1 2355 90 0 3 chr12 770183 770484 -143512005 + AluSp SINE Alu 1 300 -13 372 103 0 0 chr12 770538 770596 -143511893 + (TG)n Simple_repeat Simple_repeat 1 58 0 2383 54 3 10 chr12 770624 770918 -143511571 - AluY SINE Alu -19 292 1 2174 107 0 0 chr12 772174 772483 -143510006 - AluSx SINE Alu 0 309 1 2277 99 0 10 chr12 772777 773081 -143509408 + AluSx SINE Alu 1 301 -11 3503 218 63 24 chr12 773523 773579 -143508910 - L1ME1 LINE L1 -5 6230 6178 1579 141 118 8 chr12 773579 773842 -143508647 + AluJo SINE Alu 1 292 -20 3503 218 63 24 chr12 773842 774749 -143507740 - L1ME1 LINE L1 -57 6178 5227 877 148 0 40 chr12 774749 774898 -143507591 + FLAM_C SINE Alu 1 143 0 391 160 53 0 chr12 774905 774980 -143507509 - L1ME1 LINE L1 -985 5230 5152 722 194 40 0 chr12 774982 775106 -143507383 - FLAM_C SINE Alu -12 131 3 2385 90 3 0 chr12 775126 775425 -143507064 + AluSc SINE Alu 1 300 -9 390 171 53 0 chr12 775426 775502 -143506987 - L1ME1 LINE L1 -1059 5156 5077 * 1379 242 70 29 chr12 775496 775887 -143506602 - L1ME1 LINE L1 -3698 2517 2141 2368 71 0 19 chr12 775887 776195 -143506294 - AluY SINE Alu -9 302 1 1379 242 70 29 chr12 776195 776445 -143506044 - L1ME1 LINE L1 -4074 2141 1903 23 33 0 0 chr12 776445 776475 -143506014 + AT_rich Low_complexity Low_complexity 1 30 0 912 147 0 0 chr12 776475 776604 -143505885 - FLAM_C SINE Alu -3 130 2 316 259 84 35 chr12 776738 776881 -143505608 - L1ME1 LINE L1 -4577 1819 1670 184 97 0 32 chr12 776937 776968 -143505521 - MER5B DNA MER1_type -123 55 26 230 336 15 15 chr12 777164 777301 -143505188 + HAL1b LINE L1 1211 1347 -1 1535 99 9 0 chr12 777349 777560 -143504929 + AluSg/x SINE Alu 88 300 -10 465 284 117 94 chr12 777667 777878 -143504611 - L1MC4a LINE L1 -1884 5924 5719 1212 146 0 0 chr12 777878 778042 -143504447 - FRAM SINE Alu -2 164 1 465 284 117 94 chr12 778042 778065 -143504424 - L1MC4a LINE L1 -2089 5719 5698 2215 97 3 3 chr12 778065 778355 -143504134 - AluSg SINE Alu -6 304 15 465 284 117 94 chr12 778355 778574 -143503915 - L1MC4a LINE L1 -2110 5698 5460 189 0 0 0 chr12 778610 778631 -143503858 + (T)n Simple_repeat Simple_repeat 1 21 0 1633 173 66 4 chr12 778641 778913 -143503576 + AluJo SINE Alu 1 289 -23 308 289 161 51 chr12 778978 779023 -143503466 - L1MC4a LINE L1 -748 5398 5359 2173 112 3 0 chr12 779023 779319 -143503170 - AluSx SINE Alu -5 307 11 308 289 161 51 chr12 779319 779882 -143502607 - L1MC4a LINE L1 -787 5359 4723 333 186 0 29 chr12 780616 780710 -143501779 + AluJ/FRAM SINE Alu 224 302 0 230 238 0 0 chr12 782597 782639 -143499850 + polypyrimidine Low_complexity Low_complexity 1 42 0 344 291 173 53 chr12 784082 784481 -143498008 + L1M2 LINE L1 536 982 -5867 22 0 0 0 chr12 785206 785228 -143497261 + AT_rich Low_complexity Low_complexity 1 22 0 2249 100 3 0 chr12 786092 786401 -143496088 + AluSg SINE Alu 1 310 0 185 234 0 21 chr12 787324 787371 -143495118 - MIR SINE MIR -121 141 96 1315 80 0 58 chr12 787704 787892 -143494597 - AluSc SINE Alu -3 306 130 2498 72 3 0 chr12 788153 788460 -143494029 + AluSg SINE Alu 1 308 -2 2158 21 0 0 chr12 788768 789005 -143493484 - AluYb8 SINE Alu -2 316 80 33 25 0 0 chr12 789407 789447 -143493042 + AT_rich Low_complexity Low_complexity 1 40 0 28 29 0 0 chr12 789670 789705 -143492784 + AT_rich Low_complexity Low_complexity 1 35 0 2422 77 0 0 chr12 789726 790026 -143492463 - AluSg SINE Alu -10 300 1 728 228 162 5 chr12 790115 790312 -143492177 + MIR SINE MIR 5 232 -30 2026 111 6 59 chr12 791158 791482 -143491007 - AluSx SINE Alu -5 307 1 1255 183 71 80 chr12 792305 792443 -143490046 + MER2 DNA MER2_type 1 139 -206 2150 108 0 14 chr12 792443 792740 -143489749 - AluSx SINE Alu -2 310 18 1255 183 71 80 chr12 792740 792939 -143489550 + MER2 DNA MER2_type 139 335 -10 2284 103 6 0 chr12 793132 793443 -143489046 - AluSp SINE Alu 0 313 1 369 217 0 0 chr12 793479 793548 -143488941 - Tigger7 DNA MER2_type -31 2460 2392 800 118 118 123 chr12 793565 793699 -143488790 - Tigger7 DNA MER2_type -2243 244 110 2265 105 0 16 chr12 793699 794003 -143488486 + AluSq SINE Alu 1 299 -14 800 118 118 123 chr12 794003 794055 -143488434 - Tigger7 DNA MER2_type -2377 110 59 341 286 34 84 chr12 794324 794562 -143487927 - L2 LINE L2 -941 2373 2148 2433 79 7 0 chr12 794757 795062 -143487427 + AluSp SINE Alu 7 313 0 742 150 64 132 chr12 795224 795262 -143487227 - MER3 DNA MER1_type -3 206 167 1882 117 34 0 chr12 795262 795527 -143486962 - AluSq SINE Alu -39 274 1 742 150 64 132 chr12 795527 795663 -143486826 - MER3 DNA MER1_type -42 167 47 1656 181 7 10 chr12 795663 795951 -143486538 + AluJo SINE Alu 1 287 -25 742 150 64 132 chr12 795951 795995 -143486494 - MER3 DNA MER1_type -162 47 2 715 194 0 43 chr12 796046 796185 -143486304 + FLAM_C SINE Alu 1 133 0 204 208 198 52 chr12 796401 796497 -143485992 - L2 LINE L2 -1414 1900 1791 734 143 7 97 chr12 796498 796652 -143485837 + L1PB4 LINE L1 6011 6150 -6 23 0 0 0 chr12 796660 796683 -143485806 + AT_rich Low_complexity Low_complexity 1 23 0 2293 92 7 0 chr12 796882 797174 -143485315 - AluSg SINE Alu -16 294 1 2229 114 0 0 chr12 797176 797474 -143485015 - AluSx SINE Alu -14 298 1 2403 97 0 0 chr12 797638 797948 -143484541 - AluSg SINE Alu 0 310 1 2040 129 0 16 chr12 798524 798833 -143483656 - AluSx SINE Alu -8 304 1 2328 88 7 3 chr12 799208 799505 -143482984 - AluSg SINE Alu -12 298 1 944 185 82 26 chr12 799567 799601 -143482888 - L1MC4a LINE L1 -903 6905 6874 2030 121 10 13 chr12 799601 799899 -143482590 - AluSx SINE Alu -15 297 1 944 185 82 26 chr12 799899 800096 -143482393 - L1MC4a LINE L1 -934 6874 6661 685 187 261 84 chr12 800118 800370 -143482119 - MLT1A1 LTR MaLR 0 365 47 2474 70 3 3 chr12 800370 800671 -143481818 - AluSp SINE Alu -12 301 1 685 187 261 84 chr12 800671 800728 -143481761 - MLT1A1 LTR MaLR -318 47 1 558 146 222 27 chr12 800763 800948 -143481541 + Charlie5 DNA MER1_type 2364 2584 -28 2189 91 0 10 chr12 801395 801693 -143480796 - AluY SINE Alu -15 296 2 1632 115 0 0 chr12 801915 802132 -143480357 - AluSx SINE Alu -95 217 1 649 195 51 0 chr12 802219 802337 -143480152 - AluJb SINE Alu -178 134 11 254 228 89 50 chr12 802523 802624 -143479865 - L1ME4a LINE L1 -19 6102 5998 417 156 0 0 chr12 802802 802879 -143479610 + (TG)n Simple_repeat Simple_repeat 1 77 0 2453 65 7 0 chr12 803375 803668 -143478821 + AluSp SINE Alu 1 295 -18 231 303 202 0 chr12 804034 804133 -143478356 - L2 LINE L2 -4 3309 3191 234 224 224 36 chr12 804133 804325 -143478164 - L1ME4a LINE L1 -202 5919 5692 313 226 24 89 chr12 804968 805092 -143477397 - L1ME4a LINE L1 -458 5663 5548 603 162 0 23 chr12 805846 806081 -143476408 + AluJo SINE Alu 24 290 -22 216 237 130 95 chr12 806153 806322 -143476167 - MIR SINE MIR -30 232 58 1709 166 4 4 chr12 806450 806727 -143475762 - AluJo SINE Alu -31 281 5 393 39 0 0 chr12 806792 806843 -143475646 + (TG)n Simple_repeat Simple_repeat 2 52 0 2184 92 3 3 chr12 806843 807127 -143475362 - AluSc SINE Alu -25 284 1 2304 95 10 0 chr12 807549 807855 -143474634 - AluSc SINE Alu 0 309 1 31 0 0 0 chr12 808688 808719 -143473770 + AT_rich Low_complexity Low_complexity 1 31 0 2275 108 7 0 chr12 808723 809028 -143473461 - AluSx SINE Alu -5 307 1 21 0 0 0 chr12 809035 809056 -143473433 + AT_rich Low_complexity Low_complexity 1 21 0 2280 109 10 0 chr12 809759 810099 -143472390 - AluSx SINE Alu 0 343 1 445 200 178 0 chr12 811358 811493 -143470996 + MER112 DNA MER1_type 1 159 -101 210 37 0 0 chr12 811498 811525 -143470964 + (CAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr12 811970 811992 -143470497 + AT_rich Low_complexity Low_complexity 1 22 0 246 342 63 9 chr12 812727 812838 -143469651 - MIR SINE MIR -70 192 76 1834 114 8 0 chr12 812955 813201 -143469288 - AluSx SINE Alu -64 248 1 949 150 73 49 chr12 813204 813296 -143469193 - MER33 DNA MER1_type -2304 281 193 1933 124 3 54 chr12 813296 813611 -143468878 - AluJo SINE Alu -13 299 1 949 150 73 49 chr12 813611 813765 -143468724 - MER33 DNA MER1_type -2392 193 29 1249 152 4 52 chr12 813765 813996 -143468493 + AluJo SINE Alu 1 220 -92 1185 199 0 14 chr12 814050 814271 -143468218 + AluJo SINE Alu 3 220 -92 243 0 0 0 chr12 814306 814333 -143468156 + (A)n Simple_repeat Simple_repeat 1 27 0 1460 210 0 10 chr12 814337 814628 -143467861 + AluJo SINE Alu 3 290 -22 22 0 0 0 chr12 814631 814653 -143467836 + AT_rich Low_complexity Low_complexity 1 22 0 403 204 97 9 chr12 814909 815022 -143467467 - L1MA10 LINE L1 0 6334 6212 * 1740 260 96 28 chr12 815020 815800 -143466689 - HAL1 LINE L1 -499 2008 1176 2017 90 11 4 chr12 815820 816086 -143466403 - AluY SINE Alu -35 276 9 25 0 0 0 chr12 816151 816176 -143466313 + AT_rich Low_complexity Low_complexity 1 25 0 320 284 153 26 chr12 816201 816391 -143466098 - HAL1 LINE L1 -1631 876 663 479 324 135 30 chr12 816414 816867 -143465622 - L1M4 LINE L1 -3360 2786 2251 2133 128 3 0 chr12 816867 817164 -143465325 - AluSq SINE Alu -15 298 1 479 324 135 30 chr12 817164 817318 -143465171 - L1M4 LINE L1 -3895 2251 2115 21 0 0 0 chr12 817547 817568 -143464921 + AT_rich Low_complexity Low_complexity 1 21 0 191 337 20 61 chr12 817585 817683 -143464806 + MIR SINE MIR 4 97 -165 661 104 85 0 chr12 817704 817810 -143464679 - AluJb SINE Alu -193 119 5 440 177 125 0 chr12 817816 817912 -143464577 + MIR SINE MIR 155 262 0 186 43 0 0 chr12 818229 818252 -143464237 + (TG)n Simple_repeat Simple_repeat 2 24 0 1544 168 59 66 chr12 818274 818666 -143463823 - MLT2C1 LTR ERVL -8 389 1 2144 104 0 0 chr12 819006 819284 -143463205 + AluSg SINE Alu 3 280 -30 978 130 86 12 chr12 819932 820094 -143462395 - AluJo SINE Alu -10 302 129 523 255 78 52 chr12 820309 820540 -143461949 - MLT1L LTR MaLR -377 238 2 803 165 0 0 chr12 820669 820796 -143461693 - AluJo SINE Alu -180 132 6 198 224 0 0 chr12 821175 821224 -143461265 + CT-rich Low_complexity Low_complexity 3 51 0 321 26 0 0 chr12 821623 821661 -143460828 + (CA)n Simple_repeat Simple_repeat 1 38 0 2230 101 0 10 chr12 822703 823011 -143459478 - AluSg SINE Alu -5 305 1 23 33 0 0 chr12 823216 823246 -143459243 + AT_rich Low_complexity Low_complexity 1 30 0 247 253 154 11 chr12 823332 823423 -143459066 + MIR SINE MIR 111 214 -48 3018 171 60 23 chr12 824159 824807 -143457682 - L1MB8 LINE L1 -6 6172 5501 1637 196 73 100 chr12 824820 825169 -143457320 - L1MB8 LINE L1 -2106 4040 3683 1444 214 18 11 chr12 825169 825449 -143457040 - AluJo SINE Alu -30 282 1 1637 196 73 100 chr12 825449 825724 -143456765 - L1MB8 LINE L1 -2463 3683 3433 1545 154 91 51 chr12 825724 826074 -143456415 + THE1B LTR MaLR 1 364 0 1637 196 73 100 chr12 826074 826121 -143456368 - L1MB8 LINE L1 -2713 3433 3386 1607 161 58 14 chr12 826280 826571 -143455918 - AluSx SINE Alu -8 304 1 494 247 60 0 chr12 826592 826742 -143455747 - L1MEc LINE L1 -4320 2076 1918 542 84 0 0 chr12 826902 826973 -143455516 - AluS SINE Alu -242 71 1 2247 89 0 13 chr12 828060 828364 -143454125 + AluSx SINE Alu 1 300 -12 2450 62 0 3 chr12 828585 828889 -143453600 - AluY SINE Alu -8 303 1 23 0 0 0 chr12 829048 829071 -143453418 + AT_rich Low_complexity Low_complexity 1 23 0 1849 142 3 27 chr12 829533 829828 -143452661 - AluJb SINE Alu -24 288 1 1365 194 0 86 chr12 829960 830082 -143452407 + AluJo SINE Alu 5 136 -176 2044 112 7 0 chr12 830082 830359 -143452130 - AluSx SINE Alu -10 302 24 1365 194 0 86 chr12 830359 830550 -143451939 + AluJo SINE Alu 136 291 -21 848 163 113 17 chr12 830558 830797 -143451692 - MER69 DNA AcHobo -100 2426 2165 21 0 0 0 chr12 830821 830842 -143451647 + AT_rich Low_complexity Low_complexity 1 21 0 227 44 44 0 chr12 830856 830901 -143451588 - L1MB4 LINE L1 0 6180 6134 369 0 0 0 chr12 831821 831862 -143450627 + (TG)n Simple_repeat Simple_repeat 2 42 0 1446 169 8 0 chr12 831862 832104 -143450385 - AluJo SINE Alu -67 245 2 1074 91 0 9 chr12 833898 834161 -143448328 + AluSx SINE Alu 1 307 -3 1605 147 13 102 chr12 834665 834827 -143447662 - L1MB3 LINE L1 -11 6172 6062 1892 95 0 0 chr12 834827 835070 -143447419 - AluSq SINE Alu -70 243 1 1605 147 13 102 chr12 835070 835289 -143447200 - L1MB3 LINE L1 -121 6062 5825 212 76 76 45 chr12 835302 835368 -143447121 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 1617 183 25 53 chr12 835368 835761 -143446728 - L1MB3 LINE L1 -364 5816 5435 22 0 0 0 chr12 836255 836277 -143446212 + AT_rich Low_complexity Low_complexity 1 22 0 762 139 9 0 chr12 837575 837690 -143444799 + FLAM_C SINE Alu 2 117 -16 2683 32 0 0 chr12 838106 838416 -143444073 - AluY SINE Alu -1 310 1 564 181 147 0 chr12 838688 838804 -143443685 - FLAM_C SINE Alu 0 133 1 2388 89 0 0 chr12 839159 839461 -143443028 - AluSq SINE Alu -11 302 1 32 0 0 0 chr12 839623 839655 -143442834 + AT_rich Low_complexity Low_complexity 1 32 0 2237 97 10 0 chr12 840367 840656 -143441833 + AluSg SINE Alu 1 292 -18 206 258 106 30 chr12 842745 842811 -143439678 - L2 LINE L2 -4 3309 3239 368 229 41 118 chr12 843065 843310 -143439179 + L1MEd LINE L1 983 1208 -4911 1664 159 31 7 chr12 843365 843655 -143438834 + AluJo SINE Alu 9 305 -7 2151 82 26 49 chr12 844429 844734 -143437755 + AluSx SINE Alu 1 298 -14 3410 121 17 19 chr12 845070 845598 -143436891 - MER1A DNA MER1_type 0 527 1 321 306 136 35 chr12 846279 846537 -143435952 + L1MEd LINE L1 82 365 -5754 1477 176 3 60 chr12 846666 846985 -143435504 - AluJo SINE Alu -11 301 1 331 243 134 102 chr12 847167 847608 -143434881 + L1MEd LINE L1 682 1136 -4983 1078 105 0 0 chr12 847608 847751 -143434738 + AluSg/x SINE Alu 155 297 -12 2228 92 3 44 chr12 848054 848371 -143434118 + AluSx SINE Alu 1 304 -8 869 184 32 0 chr12 848405 848590 -143433899 - L1MB5 LINE L1 0 6174 5984 423 258 53 33 chr12 848704 848855 -143433634 + MIR3 SINE MIR 14 167 -41 2247 192 80 12 chr12 848916 849020 -143433469 - L1MB5 LINE L1 -36 6138 6035 1450 224 171 9 chr12 849020 849725 -143432764 - L1MC4 LINE L1 -743 5639 5401 1047 145 98 28 chr12 849733 849947 -143432542 - MER46A DNA MER2_type -7 229 1 5505 218 62 28 chr12 849951 850864 -143431625 - L1MC4 LINE L1 -981 5401 4408 1722 181 7 16 chr12 850864 851173 -143431316 - AluJo SINE Alu -6 306 1 5505 218 62 28 chr12 851173 851861 -143430628 - L1MC4 LINE L1 -1974 4408 3745 4361 191 105 56 chr12 851875 852485 -143430004 - L1MC4 LINE L1 -3434 2948 2369 2385 88 0 3 chr12 852485 852790 -143429699 - AluSg SINE Alu -6 304 1 4361 191 105 56 chr12 852790 854034 -143428455 - L1MC4 LINE L1 -4013 2369 997 190 260 250 0 chr12 854040 854140 -143428349 - MIR SINE MIR -10 252 128 2021 134 0 13 chr12 854298 854605 -143427884 - AluSx SINE Alu -8 304 2 26 30 0 0 chr12 855168 855201 -143427288 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr12 855335 855366 -143427123 + AT_rich Low_complexity Low_complexity 1 31 0 544 182 54 68 chr12 855478 855626 -143426863 - L1ME2 LINE L1 -52 6112 5967 322 286 61 56 chr12 855756 855987 -143426502 - L1MCa LINE L1 -4196 1884 1653 271 153 129 0 chr12 856077 856162 -143426327 + L1M4 LINE L1 1257 1352 -5190 625 205 41 41 chr12 856351 856522 -143425967 - L1MCa LINE L1 -5580 490 320 982 181 52 5 chr12 856526 856719 -143425770 + MER3 DNA MER1_type 3 204 -5 488 240 143 41 chr12 856832 857028 -143425461 - L1MCa LINE L1 -5853 217 2 2190 108 0 0 chr12 857914 858226 -143424263 - AluSx SINE Alu 0 312 1 30 77 0 0 chr12 858314 858379 -143424110 + AT_rich Low_complexity Low_complexity 1 65 0 2201 112 0 26 chr12 858413 858726 -143423763 + AluSx SINE Alu 1 305 -7 1096 186 0 61 chr12 858835 859066 -143423423 - MER20 DNA MER1_type -1 218 2 476 262 160 44 chr12 861115 861478 -143421011 - L1MC5 LINE L1 -207 7754 7350 1658 149 51 70 chr12 861529 861653 -143420836 + Charlie1b DNA MER1_type 104 229 -2532 2248 111 0 0 chr12 861653 861950 -143420539 + AluSx SINE Alu 1 297 -15 1658 149 51 70 chr12 861950 862253 -143420236 + Charlie1b DNA MER1_type 229 523 0 2395 71 0 0 chr12 862466 862760 -143419729 - AluY SINE Alu -5 306 13 191 376 55 24 chr12 863452 863617 -143418872 + L2 LINE L2 2415 2584 -730 356 340 97 59 chr12 864231 864552 -143417937 - L2 LINE L2 -16 3256 2924 378 288 56 24 chr12 864963 865088 -143417401 + MIR SINE MIR 26 154 -108 1762 144 3 63 chr12 865434 865753 -143416736 + AluJb SINE Alu 1 300 -12 282 202 149 43 chr12 865930 866024 -143416465 - L2 LINE L2 -16 3297 3194 2114 122 7 3 chr12 866068 866363 -143416126 + AluSx SINE Alu 1 296 -16 2596 223 38 18 chr12 867341 867420 -143415069 - L1MB8 LINE L1 0 6178 6102 2623 110 34 63 chr12 867420 867689 -143414800 - MER57B LTR ERV1 0 434 182 2428 90 0 0 chr12 867689 868000 -143414489 + AluSx SINE Alu 1 311 -1 2623 110 34 63 chr12 868000 868177 -143414312 - MER57B LTR ERV1 -252 182 1 2596 223 38 18 chr12 868177 868476 -143414013 - L1MB8 LINE L1 -76 6102 5810 303 28 0 0 chr12 868476 868512 -143413977 + (TG)n Simple_repeat Simple_repeat 2 37 0 2596 223 38 18 chr12 868512 868799 -143413690 - L1MB8 LINE L1 -368 5810 5499 1791 164 4 7 chr12 868802 869108 -143413381 - AluJb SINE Alu 0 310 6 740 208 77 11 chr12 869109 869292 -143413197 - MLT1C LTR MaLR -272 195 1 320 301 63 28 chr12 869301 869444 -143413045 - L2 LINE L2 -5 3308 3161 322 346 45 11 chr12 869735 869914 -143412575 - L2 LINE L2 -601 2713 2529 26 64 0 0 chr12 870060 870107 -143412382 + AT_rich Low_complexity Low_complexity 1 47 0 1876 121 7 37 chr12 870126 870424 -143412065 - AluSx SINE Alu -23 289 1 1381 197 31 76 chr12 870444 870518 -143411971 + MER58B DNA MER1_type 3 79 -2341 1665 167 0 21 chr12 870518 870806 -143411683 - AluJo SINE Alu -7 305 24 1381 197 31 76 chr12 870806 871086 -143411403 + MER58B DNA MER1_type 79 341 0 2019 149 39 42 chr12 871491 871900 -143410589 - L1MB7 LINE L1 -21 6163 5756 1658 178 27 56 chr12 872001 872377 -143410112 - MLT1A1 LTR MaLR 0 365 1 185 174 87 0 chr12 872457 872503 -143409986 + L2 LINE L2 3264 3313 0 255 103 0 0 chr12 872680 872719 -143409770 + MADE1 DNA Mariner 42 80 0 189 0 0 0 chr12 872875 872896 -143409593 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 243 0 0 0 chr12 873321 873348 -143409141 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1959 138 0 3 chr12 873351 873634 -143408855 - AluSx SINE Alu -30 282 1 1778 143 77 29 chr12 873658 874037 -143408452 - Charlie1 DNA MER1_type -19 2742 2346 274 304 0 14 chr12 874039 874108 -143408381 - Charlie1 DNA MER1_type -2691 70 3 389 204 261 42 chr12 874129 874271 -143408218 + MER5A DNA MER1_type 11 183 -6 1931 134 6 19 chr12 874519 874833 -143407656 - AluSx SINE Alu -2 310 1 26 0 0 0 chr12 875210 875236 -143407253 + AT_rich Low_complexity Low_complexity 1 26 0 2827 13 0 0 chr12 875283 875592 -143406897 - AluYa5 SINE Alu -2 309 1 22 70 0 0 chr12 875617 875660 -143406829 + AT_rich Low_complexity Low_complexity 1 43 0 416 240 39 10 chr12 875930 876034 -143406455 + MIR SINE MIR 14 120 -142 292 281 157 7 chr12 876260 876413 -143406076 - MIR SINE MIR -6 256 81 204 412 0 15 chr12 877990 878058 -143404431 + MIR3 SINE MIR 15 81 -127 2181 104 13 13 chr12 878194 878502 -143403987 - AluSc SINE Alu -1 308 1 180 0 0 0 chr12 878894 878914 -143403575 + (T)n Simple_repeat Simple_repeat 1 20 0 7714 20 3 1 chr12 879968 881378 -143401111 - L1PA4 LINE L1 -4 6151 4741 1604 164 10 10 chr12 884156 884448 -143398041 - AluJo SINE Alu -20 292 1 1560 167 64 4 chr12 884483 884747 -143397742 + AluJo SINE Alu 1 280 -32 2175 92 34 0 chr12 884753 885045 -143397444 - AluSx SINE Alu -10 302 1 1157 189 160 39 chr12 885129 885436 -143397053 + MER2 DNA MER2_type 1 344 0 2425 78 0 3 chr12 886229 886536 -143395953 - AluSc SINE Alu -3 306 1 22 56 0 19 chr12 886538 886563 -143395926 + AT_rich Low_complexity Low_complexity 1 25 -28 2090 127 0 19 chr12 886563 886877 -143395612 + AluSx SINE Alu 1 308 -4 22 56 0 19 chr12 886877 886905 -143395584 + AT_rich Low_complexity Low_complexity 25 53 0 1966 159 3 0 chr12 888592 888887 -143393602 - AluSx SINE Alu -16 296 1 258 376 56 16 chr12 889045 889170 -143393319 + MIR SINE MIR 21 150 -58 1858 136 3 42 chr12 890105 890413 -143392076 - AluJo SINE Alu -16 296 1 181 85 0 64 chr12 890437 890484 -143392005 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 2096 123 7 19 chr12 894498 894808 -143387681 - AluSx SINE Alu -6 306 1 2146 89 7 3 chr12 896774 897056 -143385433 - AluSc SINE Alu -25 284 2 2230 97 10 0 chr12 897239 897537 -143384952 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr12 898133 898159 -143384330 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr12 899888 899931 -143382558 + AT_rich Low_complexity Low_complexity 1 43 0 1093 204 5 15 chr12 900959 901165 -143381324 - MER20 DNA MER1_type -2 217 14 2142 121 0 0 chr12 902010 902300 -143380189 - AluSx SINE Alu -22 290 1 1771 99 48 79 chr12 902512 902834 -143379655 - AluSx SINE Alu 0 313 1 882 144 8 0 chr12 904432 904564 -143377925 + FRAM SINE Alu 26 158 -18 658 340 25 5 chr12 905071 905274 -143377215 - MIR SINE MIR -44 218 12 2370 68 0 3 chr12 906524 906818 -143375671 + AluY SINE Alu 1 293 -18 343 249 39 25 chr12 907050 907186 -143375303 + L1PA8A LINE L1 5671 5808 -323 314 267 28 20 chr12 907252 907401 -143375088 + L1ME4a LINE L1 1197 6049 0 2391 93 0 3 chr12 907450 907762 -143374727 - AluSp SINE Alu -2 311 1 329 153 17 0 chr12 909317 909376 -143373113 - HsTC2 DNA Tc2 -2 1896 1837 216 0 0 0 chr12 909911 909935 -143372554 + (T)n Simple_repeat Simple_repeat 1 24 0 182 309 0 0 chr12 912518 912560 -143369929 - L3b LINE CR1 -22 1561 1520 2041 116 0 7 chr12 912599 912876 -143369613 - AluSx SINE Alu -17 295 21 1100 127 0 0 chr12 914275 914432 -143368057 + AluSg/x SINE Alu 131 287 -23 2293 84 0 3 chr12 919934 920221 -143362268 + AluY SINE Alu 1 286 -25 2286 110 0 3 chr12 920349 920650 -143361839 - AluSx SINE Alu -12 300 1 2235 102 7 0 chr12 921541 921835 -143360654 - AluSp SINE Alu -17 296 1 219 88 0 0 chr12 921991 922025 -143360464 + (T)n Simple_repeat Simple_repeat 1 34 0 379 203 14 0 chr12 922094 922168 -143360321 + Charlie1 DNA MER1_type 46 120 -2641 1102 139 12 6 chr12 922170 922335 -143360154 + AluJo SINE Alu 127 292 -20 337 216 137 10 chr12 922335 922437 -143360052 + Charlie1 DNA MER1_type 2149 2263 -498 1280 26 0 7 chr12 922475 922628 -143359861 - L1PA4 LINE L1 -3 6152 6001 844 195 113 15 chr12 922655 922850 -143359639 - MER58A DNA MER1_type 0 224 11 251 257 114 0 chr12 923111 923216 -143359273 + L1MC4a LINE L1 5371 5487 -2321 408 216 84 96 chr12 923353 923370 -143359119 + L1MC4a LINE L1 5716 5732 -2076 1879 172 0 7 chr12 923370 923673 -143358816 + AluJb SINE Alu 1 301 -11 408 216 84 96 chr12 923673 923822 -143358667 + L1MC4a LINE L1 5732 5880 -1928 2343 82 0 0 chr12 923939 924245 -143358244 + AluY SINE Alu 1 306 0 2215 123 0 0 chr12 924333 924626 -143357863 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr12 925812 925844 -143356645 + AT_rich Low_complexity Low_complexity 1 32 0 2277 131 0 0 chr12 925844 926156 -143356333 - AluSx SINE Alu 0 312 1 477 0 0 0 chr12 927284 927337 -143355152 + (CA)n Simple_repeat Simple_repeat 1 53 0 236 198 74 0 chr12 927420 927501 -143354988 + (TTA)n Simple_repeat Simple_repeat 1 87 0 2403 92 3 0 chr12 928600 928903 -143353586 + AluY SINE Alu 1 304 -7 971 169 0 41 chr12 928970 929142 -143353347 - AluJo/FRAM SINE Alu -18 294 130 2224 96 7 3 chr12 929145 929436 -143353053 - AluSx SINE Alu -20 292 1 1215 125 171 75 chr12 929696 929977 -143352512 - AluSx SINE Alu -4 308 1 201 74 0 0 chr12 930405 930432 -143352057 + (T)n Simple_repeat Simple_repeat 1 27 0 1961 91 4 8 chr12 930432 930684 -143351805 - AluSq SINE Alu -62 251 1 1924 147 0 17 chr12 932412 932711 -143349778 + AluJb SINE Alu 1 294 -18 182 250 0 0 chr12 933202 933242 -143349247 + L2 LINE L2 3224 3263 -9 221 219 0 55 chr12 935184 935257 -143347232 - L2 LINE L2 -36 3277 3209 1295 181 82 25 chr12 937153 937434 -143345055 + AluJo SINE Alu 1 297 -15 2224 111 3 7 chr12 937434 937731 -143344758 + AluSx SINE Alu 1 297 -15 195 42 0 0 chr12 941091 941115 -143341374 + (CCA)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr12 941671 941692 -143340797 + AT_rich Low_complexity Low_complexity 1 21 0 1895 116 10 43 chr12 942129 942430 -143340059 + AluSx SINE Alu 1 291 -21 945 149 124 146 chr12 942559 942915 -143339574 + MER46B DNA MER2_type 5 227 -9 731 228 25 0 chr12 942976 943138 -143339351 + FRAM SINE Alu 1 166 0 1574 147 90 4 chr12 945271 945550 -143336939 + AluJb SINE Alu 1 303 -9 2221 114 10 7 chr12 946105 946412 -143336077 - AluSx SINE Alu -4 308 1 200 269 0 0 chr12 946776 946843 -143335646 + (CTG)n Simple_repeat Simple_repeat 3 69 0 647 143 109 0 chr12 947997 948116 -143334373 + AluJb SINE Alu 2 133 -179 1236 109 0 75 chr12 948146 948347 -143334142 + AluSg/x SINE Alu 109 294 -18 890 267 99 44 chr12 948357 948784 -143333705 + L1ME3A LINE L1 5470 5962 -208 1822 141 6 44 chr12 948784 949104 -143333385 - AluJo SINE Alu -4 308 1 890 267 99 44 chr12 949104 949310 -143333179 + L1ME3A LINE L1 5962 6155 -15 628 161 28 133 chr12 949351 949562 -143332927 + L1ME3A LINE L1 5902 6090 -80 2078 119 25 0 chr12 949569 949854 -143332635 + AluSq SINE Alu 11 302 -11 2142 99 3 20 chr12 949859 950162 -143332327 + AluSx SINE Alu 1 298 -14 2032 135 7 7 chr12 950166 950463 -143332026 + AluSq SINE Alu 1 297 -16 1269 109 0 0 chr12 950463 950628 -143331861 + AluSg/x SINE Alu 134 298 -14 2391 224 70 19 chr12 950635 950670 -143331819 + L1M4 LINE L1 2379 2411 -3735 2499 60 0 13 chr12 950670 950972 -143331517 + AluY SINE Alu 1 298 -13 2391 224 70 19 chr12 950972 951722 -143330767 + L1M4 LINE L1 2411 3204 -2942 1596 141 0 20 chr12 951735 951983 -143330506 + AluJb SINE Alu 16 258 -54 527 160 0 84 chr12 951987 952083 -143330406 + AluJb SINE Alu 190 274 -38 216 0 0 0 chr12 952083 952107 -143330382 + (AGATG)n Simple_repeat Simple_repeat 5 28 0 527 160 0 84 chr12 952107 952141 -143330348 + AluJb SINE Alu 274 309 -3 3187 146 32 53 chr12 952142 952219 -143330270 + L1MB2 LINE L1 5319 5396 -775 2288 103 3 0 chr12 952219 952511 -143329978 + AluSx SINE Alu 1 293 -19 3187 146 32 53 chr12 952511 953097 -143329392 + L1MB2 LINE L1 5396 5968 -203 515 183 77 0 chr12 953105 953209 -143329280 + FLAM_C SINE Alu 22 133 -10 1879 139 0 80 chr12 953214 953553 -143328936 - AluSx SINE Alu 0 312 1 250 153 0 0 chr12 953572 953628 -143328861 + FAM SINE Alu 126 169 -6 1313 168 30 99 chr12 953656 953989 -143328500 + AluJo SINE Alu 3 312 0 704 176 204 0 chr12 953989 954165 -143328324 + L1MB2 LINE L1 5960 6171 0 343 147 18 110 chr12 954159 954171 -143328318 + L1M4 LINE L1 3684 3696 -2450 * 2133 105 13 10 chr12 954171 954476 -143328013 + AluSx SINE Alu 1 306 -6 343 147 18 110 chr12 954476 954523 -143327966 + L1M4 LINE L1 3696 3731 -2415 2351 72 3 7 chr12 954523 954814 -143327675 + AluSg SINE Alu 1 290 -20 343 147 18 110 chr12 954814 954862 -143327627 + L1M4 LINE L1 3731 3782 -2364 2513 60 0 0 chr12 955342 955644 -143326845 - AluY SINE Alu -9 302 1 312 241 37 37 chr12 956042 956150 -143326339 - L2 LINE L2 -3 3310 3203 2222 159 56 31 chr12 956416 956605 -143325884 + MSTB LTR MaLR 2 185 -241 1844 153 0 34 chr12 956605 956926 -143325563 + AluJo SINE Alu 1 310 -2 2222 159 56 31 chr12 956926 957150 -143325339 + MSTB LTR MaLR 185 425 -1 233 266 91 106 chr12 957814 957979 -143324510 + Charlie2 DNA MER1_type 117 280 -2502 2303 102 3 0 chr12 957979 958273 -143324216 + AluSx SINE Alu 1 295 -17 233 266 91 106 chr12 958273 958306 -143324183 + Charlie2 DNA MER1_type 280 312 -2470 2149 194 47 118 chr12 958322 958624 -143323865 + Charlie2 DNA MER1_type 1872 2194 -668 2332 82 0 16 chr12 958624 958927 -143323562 + AluSp SINE Alu 1 298 -15 2149 194 47 118 chr12 958927 959307 -143323182 + Charlie2 DNA MER1_type 2194 2479 -383 1668 154 0 4 chr12 959307 959560 -143322929 - AluJo SINE Alu -60 252 1 2149 194 47 118 chr12 959560 959765 -143322724 + Charlie2 DNA MER1_type 2479 2697 -165 379 209 338 14 chr12 959765 959913 -143322576 - MER6B DNA MER2_type 0 210 15 * 736 185 39 22 chr12 959902 960080 -143322409 + Charlie2 DNA MER1_type 2680 2860 -2 841 117 0 17 chr12 960663 960783 -143321706 + FRAM SINE Alu 37 154 -22 2093 128 0 13 chr12 961079 961385 -143321104 + AluJb SINE Alu 1 302 -10 432 126 207 0 chr12 961793 961880 -143320609 - Charlie1 DNA MER1_type -33 2728 2624 * 880 231 60 5 chr12 961879 962078 -143320411 - Charlie1 DNA MER1_type -2551 210 1 1028 85 8 0 chr12 962471 962601 -143319888 + AluSg SINE Alu 1 131 -179 2309 105 0 0 chr12 962609 962904 -143319585 + AluSx SINE Alu 3 297 -15 2255 96 7 3 chr12 963571 963872 -143318617 + AluY SINE Alu 1 302 -9 1093 183 177 19 chr12 964132 964234 -143318255 + MER46B DNA MER2_type 2 87 -2644 1760 145 69 7 chr12 964234 964523 -143317966 + AluJo SINE Alu 1 307 -5 1093 183 177 19 chr12 964523 964579 -143317910 + MER46B DNA MER2_type 87 133 -2598 2277 91 20 0 chr12 964579 964876 -143317613 + AluSx SINE Alu 1 303 -9 1093 183 177 19 chr12 964876 965027 -143317462 + MER46B DNA MER2_type 133 236 0 884 129 43 0 chr12 965035 965175 -143317314 + L1MA9 LINE L1 6162 6307 -5 2207 111 0 7 chr12 965225 965514 -143316975 + AluSx SINE Alu 1 287 -25 190 176 0 0 chr12 965740 965774 -143316715 + MER5A DNA MER1_type 21 54 -135 1233 167 17 25 chr12 965776 966016 -143316473 - AluJo SINE Alu -11 301 64 2401 91 0 0 chr12 966602 966900 -143315589 + AluSg SINE Alu 1 298 -12 1276 119 11 0 chr12 966900 967076 -143315413 + AluSg/x SINE Alu 132 309 -1 680 188 100 109 chr12 967376 967605 -143314884 + MIR SINE MIR 21 247 -15 237 311 40 0 chr12 967636 967710 -143314779 - L2 LINE L2 -5 3308 3232 1302 163 111 12 chr12 967714 967795 -143314694 + AluJo SINE Alu 29 101 -211 2334 87 0 3 chr12 967795 968093 -143314396 + AluSg SINE Alu 1 297 -13 1302 163 111 12 chr12 968093 968263 -143314226 + AluJo SINE Alu 101 305 -7 947 277 83 75 chr12 968274 968999 -143313490 - L2 LINE L2 -681 2633 1903 2092 95 9 54 chr12 969067 969382 -143313107 - AluY SINE Alu -10 301 1 1135 158 0 12 chr12 969416 969587 -143312902 + FAM SINE Alu 1 169 -6 1030 180 40 40 chr12 969913 970113 -143312376 - AluJo SINE Alu -25 287 88 274 367 109 9 chr12 970116 970345 -143312144 + L3 LINE CR1 255 506 -1071 180 282 56 28 chr12 970399 970470 -143312019 + L3 LINE CR1 502 574 -1003 700 339 42 44 chr12 970487 970944 -143311545 - L2 LINE L2 -2595 719 264 213 290 171 38 chr12 970944 971237 -143311252 + L2 LINE L2 1635 1966 -1348 1063 255 199 8 chr12 971237 971718 -143310771 - MLT1F1 LTR MaLR 0 567 1 409 339 189 13 chr12 971718 971834 -143310655 + L2 LINE L2 1962 2056 -1258 2472 92 0 0 chr12 971834 972140 -143310349 - AluSx SINE Alu -6 306 1 409 339 189 13 chr12 972140 972474 -143310015 + L2 LINE L2 2056 2491 -823 2164 81 63 0 chr12 972590 972875 -143309614 - AluSx SINE Alu -9 303 1 221 262 0 0 chr12 972877 972919 -143309570 + L3 LINE CR1 1528 1569 -8 2092 137 0 3 chr12 973183 973483 -143309006 + AluSx SINE Alu 1 299 -13 1516 125 10 0 chr12 973545 973753 -143308736 + AluSc SINE Alu 83 292 -17 21 0 0 0 chr12 973872 973893 -143308596 + AT_rich Low_complexity Low_complexity 1 21 0 2011 94 62 0 chr12 973894 974170 -143308319 - AluSx SINE Alu -8 304 12 791 247 0 18 chr12 974170 974336 -143308153 - AluJo SINE Alu -148 164 2 2101 212 84 29 chr12 974588 974833 -143307656 - L1ME3A LINE L1 -219 5951 5721 2160 127 0 3 chr12 974833 975141 -143307348 - AluSx SINE Alu -5 307 1 2036 136 6 40 chr12 975143 975466 -143307023 - AluJb SINE Alu 0 312 1 2101 212 84 29 chr12 975466 975933 -143306556 - L1ME3A LINE L1 -449 5721 5197 996 116 0 20 chr12 975948 976094 -143306395 + FLAM_C SINE Alu 1 143 0 1101 265 119 13 chr12 976113 976649 -143305840 - L1ME3A LINE L1 -1526 4620 4028 2381 210 27 10 chr12 976649 977130 -143305359 - REP3 LTR ERV 0 562 74 332 272 124 18 chr12 977162 977331 -143305158 - L1ME3A LINE L1 -2114 4032 3846 2378 104 0 0 chr12 977375 977684 -143304805 - AluSg SINE Alu -1 309 1 387 0 0 0 chr12 977786 977829 -143304660 + (TG)n Simple_repeat Simple_repeat 2 44 0 1684 155 42 0 chr12 978155 978420 -143304069 - AluJb SINE Alu -36 276 1 22 0 0 0 chr12 978685 978707 -143303782 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr12 978868 978905 -143303584 + AT_rich Low_complexity Low_complexity 1 37 0 2408 78 3 0 chr12 978941 979236 -143303253 - AluSx SINE Alu -16 296 1 1004 199 130 4 chr12 979249 979380 -143303109 - AluJo SINE Alu -24 288 175 1325 200 51 44 chr12 979380 979675 -143302814 - AluJb SINE Alu -15 297 1 1004 199 130 4 chr12 979675 979774 -143302715 - AluJo SINE Alu -137 175 29 246 86 21 75 chr12 979905 979998 -143302491 + (TA)n Simple_repeat Simple_repeat 2 89 0 361 303 21 28 chr12 980155 980297 -143302192 - L2 LINE L2 -476 2838 2698 480 100 0 0 chr12 980440 980520 -143301969 + (TC)n Simple_repeat Simple_repeat 1 80 0 261 0 0 0 chr12 980520 980549 -143301940 + (TG)n Simple_repeat Simple_repeat 2 30 0 513 211 0 37 chr12 980643 980752 -143301737 - MER3 DNA MER1_type -2 207 103 438 233 78 0 chr12 980855 980958 -143301531 - MER3 DNA MER1_type -98 111 1 1174 153 74 114 chr12 981253 981423 -143301066 - Charlie5 DNA MER1_type -1 2623 2448 1016 90 0 15 chr12 981423 981556 -143300933 - FLAM_C SINE Alu -2 131 1 1174 153 74 114 chr12 981556 981790 -143300699 - Charlie5 DNA MER1_type -176 2448 2235 621 159 32 56 chr12 981793 981919 -143300570 - Charlie5 DNA MER1_type -2489 123 1 1987 113 0 7 chr12 982157 982432 -143300057 - AluSx SINE Alu -15 297 25 236 268 99 0 chr12 982693 982764 -143299725 + MER117 DNA MER1_type 15 92 -105 1783 148 19 42 chr12 982839 983149 -143299340 - AluJb SINE Alu -9 303 1 1837 145 13 43 chr12 983295 983598 -143298891 + AluSx SINE Alu 1 294 -18 2051 92 60 0 chr12 984115 984397 -143298092 - AluSc SINE Alu -10 299 1 237 143 54 54 chr12 984448 984504 -143297985 - MER46C DNA MER2_type -46 292 237 222 116 0 0 chr12 985362 985405 -143297084 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1282 180 78 35 chr12 985407 985662 -143296827 - AluJo SINE Alu -44 268 3 1922 165 0 0 chr12 985816 986119 -143296370 - AluSx SINE Alu -9 303 1 2236 126 7 0 chr12 986397 986707 -143295782 - AluSx SINE Alu 0 312 1 1852 150 41 0 chr12 986709 987002 -143295487 - AluSx SINE Alu -7 305 1 497 233 89 47 chr12 987048 987284 -143295205 - L1MC/D LINE L1 -1989 5819 5574 2213 109 0 25 chr12 988274 988594 -143293895 - AluSx SINE Alu 0 312 1 2322 109 0 0 chr12 988638 988940 -143293549 - AluSx SINE Alu -10 302 1 2235 112 0 3 chr12 989139 989442 -143293047 - AluSx SINE Alu -10 302 1 2075 104 13 41 chr12 989842 990158 -143292331 - AluSx SINE Alu -5 307 1 326 347 132 12 chr12 990363 990768 -143291721 - L2 LINE L2 -14 3258 2773 1728 180 0 3 chr12 990779 991068 -143291421 - AluJb SINE Alu -24 288 1 962 213 53 9 chr12 991069 991294 -143291195 - Charlie1 DNA MER1_type -2522 239 5 1467 159 3 123 chr12 991357 991697 -143290792 - AluJo SINE Alu -13 299 1 1776 197 185 25 chr12 991762 991818 -143290671 - MLT1F1 LTR MaLR -8 559 513 2100 131 0 0 chr12 991818 992126 -143290363 + AluSx SINE Alu 1 308 0 1776 197 185 25 chr12 992126 992550 -143289939 - MLT1F1 LTR MaLR -54 513 1 2342 91 3 0 chr12 992852 993148 -143289341 - AluSg1 SINE Alu -12 297 1 1650 174 13 29 chr12 993411 993544 -143288945 + AluJb SINE Alu 1 135 -177 2504 50 0 7 chr12 993544 993842 -143288647 + AluY SINE Alu 1 296 -15 207 0 0 0 chr12 993845 993868 -143288621 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1650 174 13 29 chr12 993868 994041 -143288448 + AluJb SINE Alu 137 306 -6 2327 71 51 0 chr12 994799 995095 -143287394 - AluY SINE Alu 0 311 1 881 205 49 0 chr12 995474 995679 -143286810 - Charlie1 DNA MER1_type 0 2761 2547 2204 106 7 3 chr12 995695 995996 -143286493 - AluSq SINE Alu -11 302 1 1149 130 0 0 chr12 996377 996538 -143285951 - AluSx SINE Alu -151 161 1 2039 105 0 7 chr12 996549 996826 -143285663 - AluY SINE Alu -36 275 1 2068 120 33 0 chr12 996828 997127 -143285362 - AluSq SINE Alu -4 309 1 25 0 0 0 chr12 997130 997155 -143285334 + AT_rich Low_complexity Low_complexity 1 25 0 2280 113 0 3 chr12 997523 997832 -143284657 - AluSg SINE Alu -2 308 1 758 271 123 39 chr12 997969 998327 -143284162 + MER20B DNA MER1_type 44 431 -352 944 183 74 26 chr12 998369 998598 -143283891 + MER20B DNA MER1_type 544 783 0 420 306 50 6 chr12 998617 998777 -143283712 + MIR3 SINE MIR 37 203 -5 189 310 55 35 chr12 998956 999101 -143283388 + MIR SINE MIR 106 253 -9 22 0 0 0 chr12 999627 999649 -143282840 + AT_rich Low_complexity Low_complexity 1 22 0 408 286 95 14 chr12 999997 1000144 -143282345 - MIR SINE MIR -38 224 66 22 35 0 0 chr12 1000221 1000250 -143282239 + AT_rich Low_complexity Low_complexity 1 29 0 1172 171 101 19 chr12 1000852 1001109 -143281380 + MER58B DNA MER1_type 53 330 -11 663 258 154 0 chr12 1001140 1001361 -143281128 - MIR SINE MIR 0 262 8 848 156 10 116 chr12 1003844 1004043 -143278446 - MER5B DNA MER1_type 0 178 1 253 229 0 16 chr12 1004043 1004097 -143278392 - MER117 DNA MER1_type -139 58 4 2377 71 34 0 chr12 1004237 1004532 -143277957 - AluSq SINE Alu -8 305 1 383 229 95 17 chr12 1004925 1005038 -143277451 - MER5A DNA MER1_type -14 164 43 2049 81 0 4 chr12 1005242 1005503 -143276986 + AluSc SINE Alu 30 289 -20 532 261 75 25 chr12 1005636 1005797 -143276692 - MER5B DNA MER1_type -3 175 7 1601 160 0 97 chr12 1005897 1006228 -143276261 + AluJb SINE Alu 1 299 -3 1042 144 86 6 chr12 1006558 1006732 -143275757 - MER5A DNA MER1_type 0 189 2 2245 108 0 0 chr12 1007178 1007475 -143275014 + AluSq SINE Alu 1 297 -16 222 270 0 32 chr12 1009213 1009276 -143273213 - L2 LINE L2 -2 3311 3251 338 184 132 0 chr12 1009461 1009537 -143272952 + FRAM SINE Alu 56 141 -25 216 0 0 0 chr12 1009542 1009566 -143272923 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2132 139 7 0 chr12 1009660 1009970 -143272519 - AluSx SINE Alu 0 312 1 398 271 177 6 chr12 1010166 1010347 -143272142 + MIR SINE MIR 8 219 -43 989 96 0 22 chr12 1010352 1010515 -143271974 + FLAM_C SINE Alu 1 160 0 21 0 0 0 chr12 1010562 1010583 -143271906 + AT_rich Low_complexity Low_complexity 1 21 0 2156 179 36 116 chr12 1010781 1011446 -143271043 - LTR9 LTR ERV1 0 612 1 1699 149 64 14 chr12 1011620 1011916 -143270573 - AluSx SINE Alu -1 311 1 2257 117 0 0 chr12 1012076 1012384 -143270105 - AluSc SINE Alu -1 308 1 9138 141 9 96 chr12 1012454 1013280 -143269209 - L1M LINE L1 -837 5309 4413 829 186 0 14 chr12 1013280 1013425 -143269064 - FRAM SINE Alu -12 164 22 9138 141 9 96 chr12 1013425 1014535 -143267954 - L1M LINE L1 -1733 4413 3444 2411 70 6 70 chr12 1014535 1014666 -143267823 - THE1A LTR MaLR 0 355 217 3154 43 0 0 chr12 1014666 1015038 -143267451 - L1PA3 LINE L1 0 6155 5784 2411 70 6 70 chr12 1015038 1015215 -143267274 - THE1A LTR MaLR -138 217 70 2472 60 3 10 chr12 1015215 1015517 -143266972 - AluY SINE Alu -11 300 1 2411 70 6 70 chr12 1015517 1015562 -143266927 - THE1A LTR MaLR -285 70 24 1093 150 123 0 chr12 1015578 1015798 -143266691 - L1 LINE L1 -2698 4150 3904 1695 164 3 24 chr12 1015805 1016098 -143266391 + AluSx SINE Alu 1 287 -25 261 246 0 0 chr12 1016192 1016253 -143266236 + CT-rich Low_complexity Low_complexity 2 62 0 968 181 39 0 chr12 1016255 1016460 -143266029 - L1 LINE L1 -2983 3865 3653 2377 79 26 0 chr12 1016469 1016772 -143265717 - AluY SINE Alu 0 311 1 817 138 0 48 chr12 1016772 1016907 -143265582 - FLAM_C SINE Alu -177 135 6 2737 204 70 5 chr12 1016914 1017557 -143264932 - L1 LINE L1 -3186 3662 2978 1178 121 0 29 chr12 1017557 1017731 -143264758 - AluSq SINE Alu -16 297 129 210 91 0 0 chr12 1017731 1017764 -143264725 + (TATG)n Simple_repeat Simple_repeat 2 34 0 2033 128 0 3 chr12 1017768 1018056 -143264433 - AluSx SINE Alu -25 287 1 4511 152 54 151 chr12 1018057 1018715 -143263774 - L1 LINE L1 -3862 2986 2265 687 176 37 7 chr12 1018715 1018851 -143263638 - FAM SINE Alu -11 174 35 4511 152 54 151 chr12 1018851 1018901 -143263588 - L1 LINE L1 -4583 2265 2212 1452 187 28 21 chr12 1018901 1019185 -143263304 - AluJo SINE Alu -24 288 3 4511 152 54 151 chr12 1019185 1019483 -143263006 - L1 LINE L1 -4636 2212 1886 2476 99 0 0 chr12 1019483 1019795 -143262694 - AluSx SINE Alu 0 312 1 4511 152 54 151 chr12 1019795 1019975 -143262514 - L1 LINE L1 -4962 1886 1845 372 22 0 0 chr12 1019975 1020020 -143262469 + (TG)n Simple_repeat Simple_repeat 2 46 0 4511 152 54 151 chr12 1020020 1020302 -143262187 - L1 LINE L1 -5003 1845 1537 1963 194 11 3 chr12 1020302 1020678 -143261811 + L1MB5 LINE L1 5788 6166 -8 2319 110 0 0 chr12 1021049 1021349 -143261140 + AluSx SINE Alu 1 300 -12 1158 161 0 0 chr12 1021434 1021602 -143260887 - AluJo SINE Alu -144 168 1 2380 86 7 0 chr12 1022421 1022723 -143259766 - AluSg SINE Alu -5 305 2 290 286 51 51 chr12 1023998 1024085 -143258404 + L1MB8 LINE L1 5710 5796 -382 998 232 100 16 chr12 1024085 1024395 -143258094 - MER46C DNA MER2_type 0 338 3 290 286 51 51 chr12 1024395 1024562 -143257927 + L1MB8 LINE L1 5795 5964 -214 1781 153 58 7 chr12 1024785 1025080 -143257409 - AluJo SINE Alu -2 310 1 242 239 53 35 chr12 1025178 1025197 -143257292 - L1MA10 LINE L1 -1 6333 6315 2631 185 98 102 chr12 1025197 1025298 -143257191 - L1ME2 LINE L1 -10 6154 6054 238 128 0 0 chr12 1025298 1025337 -143257152 - MER3 DNA MER1_type -160 49 11 2631 185 98 102 chr12 1025337 1026244 -143256245 - L1ME2 LINE L1 -110 6054 5129 2332 107 0 0 chr12 1026313 1026613 -143255876 + AluSx SINE Alu 1 300 -12 2112 130 0 0 chr12 1027188 1027487 -143255002 - AluSx SINE Alu -13 299 1 694 126 0 0 chr12 1027515 1027610 -143254879 + AluY SINE Alu 2 96 -222 207 162 0 0 chr12 1027733 1027770 -143254719 + G-rich Low_complexity Low_complexity 2 38 0 2123 120 23 0 chr12 1027776 1028077 -143254412 + AluSx SINE Alu 3 310 -2 560 185 9 9 chr12 1028363 1028471 -143254018 + MLT1C LTR MaLR 360 467 0 412 298 129 28 chr12 1028564 1029083 -143253406 - L1ME LINE L1 -442 5720 5152 2143 109 0 7 chr12 1029095 1029379 -143253110 + AluSx SINE Alu 1 282 -30 359 288 61 102 chr12 1030118 1030208 -143252281 + MLT1L LTR MaLR 1 93 -522 2264 111 3 3 chr12 1030208 1030515 -143251974 - AluSg SINE Alu -1 309 3 1667 83 0 9 chr12 1030518 1030734 -143251755 - AluSg/x SINE Alu -6 304 91 359 288 61 102 chr12 1030734 1030903 -143251586 + MLT1L LTR MaLR 95 253 -362 627 245 43 0 chr12 1031034 1031173 -143251316 + MER45A DNA AcHobo 34 178 0 295 295 76 0 chr12 1031190 1031295 -143251194 + MLT1L LTR MaLR 493 605 -10 2299 95 7 3 chr12 1031296 1031592 -143250897 - AluSq SINE Alu -16 297 1 2461 82 0 25 chr12 1031921 1032239 -143250250 + AluSq SINE Alu 1 310 -3 1925 157 0 13 chr12 1032253 1032565 -143249924 + AluJb SINE Alu 5 312 0 565 240 84 71 chr12 1032660 1032962 -143249527 - MLT1G1 LTR MaLR -64 531 146 2276 102 0 0 chr12 1032962 1033257 -143249232 - AluSq SINE Alu -14 299 5 565 240 84 71 chr12 1033257 1033405 -143249084 - MLT1G1 LTR MaLR -449 146 1 362 297 31 0 chr12 1033874 1034002 -143248487 - MIR SINE MIR -45 217 86 397 298 18 0 chr12 1034073 1034187 -143248302 - L2 LINE L2 -1 3312 3197 1384 185 52 55 chr12 1034319 1034686 -143247803 - MER93b LTR ERV1 -7 366 1 190 219 0 0 chr12 1034688 1034729 -143247760 - L2 LINE L2 -320 2952 2912 1236 281 113 71 chr12 1034871 1035239 -143247250 - L2 LINE L2 -573 2741 2390 1578 150 29 33 chr12 1035239 1035512 -143246977 - AluJo SINE Alu -40 272 1 1236 281 113 71 chr12 1035512 1035781 -143246708 - L2 LINE L2 -924 2390 2134 2425 64 27 0 chr12 1035781 1036078 -143246411 + AluSx SINE Alu 1 305 -7 1236 281 113 71 chr12 1036078 1036115 -143246374 - L2 LINE L2 -1180 2134 2100 1388 202 114 52 chr12 1036115 1036321 -143246168 + MLT1C LTR MaLR 1 193 -274 1828 167 0 16 chr12 1036321 1036626 -143245863 + AluSx SINE Alu 1 300 -12 1388 202 114 52 chr12 1036626 1036859 -143245630 + MLT1C LTR MaLR 193 467 0 1236 281 113 71 chr12 1036859 1037014 -143245475 - L2 LINE L2 -1214 2100 1875 2451 64 3 26 chr12 1037080 1037392 -143245097 - AluY SINE Alu -6 305 1 264 59 0 0 chr12 1037439 1037473 -143245016 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1328 181 3 122 chr12 1037476 1037796 -143244693 - AluJb SINE Alu -19 283 2 548 251 54 35 chr12 1038045 1038248 -143244241 - L2 LINE L2 -2 3311 3105 26 74 0 0 chr12 1038371 1038425 -143244064 + AT_rich Low_complexity Low_complexity 1 54 0 711 241 140 26 chr12 1038570 1039031 -143243458 - L2 LINE L2 -190 3123 2629 1852 131 0 0 chr12 1039032 1039284 -143243205 + AluSx SINE Alu 2 253 -59 1467 196 11 0 chr12 1039355 1039621 -143242868 - AluJo SINE Alu -43 269 1 206 121 0 0 chr12 1039693 1039726 -143242763 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2234 94 3 0 chr12 1039734 1040022 -143242467 - AluSg SINE Alu -21 289 1 497 206 142 179 chr12 1040248 1040439 -143242050 + MLT1J LTR MaLR 12 209 -302 2013 138 3 3 chr12 1040439 1040729 -143241760 - AluSg SINE Alu -20 290 1 1652 149 46 11 chr12 1040730 1041012 -143241477 - AluJo SINE Alu -20 292 1 497 206 142 179 chr12 1041012 1041303 -143241186 + MLT1J LTR MaLR 208 478 -33 213 271 51 0 chr12 1041442 1041501 -143240988 - L2 LINE L2 -53 3219 3158 2093 141 0 10 chr12 1041844 1042142 -143240347 + AluSx SINE Alu 3 297 -15 839 179 28 0 chr12 1042374 1042519 -143239970 - AluJb SINE Alu -32 280 132 733 176 0 0 chr12 1042533 1042658 -143239831 + AluSc SINE Alu 133 257 -52 414 160 27 0 chr12 1042653 1042728 -143239761 - BC200 scRNA scRNA -123 77 1 * 349 221 0 32 chr12 1042728 1042823 -143239666 - L1ME3A LINE L1 -230 5940 5849 2735 235 20 32 chr12 1042836 1043518 -143238971 + L1M4 LINE L1 9 682 -5860 437 248 111 0 chr12 1043523 1043640 -143238849 + L2 LINE L2 3183 3312 -1 2068 139 21 6 chr12 1043670 1044007 -143238482 - MER2 DNA MER2_type -1 343 2 22 80 0 0 chr12 1044152 1044202 -143238287 + AT_rich Low_complexity Low_complexity 1 50 0 2076 117 3 20 chr12 1044250 1044550 -143237939 + AluJo SINE Alu 1 295 -17 2101 111 6 38 chr12 1044772 1045087 -143237402 + AluSx SINE Alu 1 305 -7 27 29 0 0 chr12 1046302 1046336 -143236153 + AT_rich Low_complexity Low_complexity 1 34 0 2196 39 8 4 chr12 1046501 1046760 -143235729 - AluY SINE Alu -18 293 34 403 234 145 69 chr12 1046878 1047168 -143235321 - L2 LINE L2 0 3313 3002 2370 104 0 0 chr12 1047361 1047660 -143234829 + AluSq SINE Alu 1 299 -14 2178 202 99 8 chr12 1047949 1048434 -143234055 + MER82 DNA MER2_type 1 529 -124 2193 106 3 10 chr12 1048669 1048980 -143233509 + AluSp SINE Alu 5 313 0 2233 126 0 0 chr12 1048988 1049297 -143233192 + AluSx SINE Alu 3 311 -1 180 0 0 0 chr12 1049450 1049470 -143233019 + (A)n Simple_repeat Simple_repeat 1 20 0 1263 175 5 22 chr12 1049475 1049698 -143232791 - AluJo SINE Alu -30 282 64 229 284 35 35 chr12 1050177 1050318 -143232171 + LTR16C LTR ERVL 320 460 -31 1060 289 84 29 chr12 1050350 1050392 -143232097 + LTR16C LTR ERVL 1 39 -452 2320 97 0 7 chr12 1050392 1050690 -143231799 - AluSx SINE Alu -16 296 1 1060 289 84 29 chr12 1050690 1051063 -143231426 + LTR16C LTR ERVL 39 439 -52 1048 208 128 81 chr12 1051092 1051365 -143231124 + L1MC4 LINE L1 7326 7624 -418 2067 140 3 3 chr12 1051365 1051672 -143230817 + AluSx SINE Alu 1 307 -5 1048 208 128 81 chr12 1051672 1051782 -143230707 + L1MC4 LINE L1 7624 7727 -315 593 170 0 0 chr12 1051800 1051894 -143230595 - AluJb SINE Alu -86 226 133 237 288 93 49 chr12 1051895 1052017 -143230472 + L1MC4 LINE L1 7781 7917 -125 297 0 0 0 chr12 1052017 1052050 -143230439 + (TG)n Simple_repeat Simple_repeat 2 34 0 237 288 93 49 chr12 1052050 1052132 -143230357 + L1MC4 LINE L1 7917 7994 -48 1656 154 46 4 chr12 1052134 1052414 -143230075 - AluJo SINE Alu -20 292 1 2384 94 0 0 chr12 1052761 1053060 -143229429 + AluSg SINE Alu 3 301 -9 2198 68 0 54 chr12 1053281 1053604 -143228885 + AluSc SINE Alu 1 307 0 782 258 9 65 chr12 1053803 1054199 -143228290 + L1ME LINE L1 1182 1692 -4871 * 2640 218 85 22 chr12 1054194 1054288 -143228201 + L1ME LINE L1 4620 4707 -1691 2328 98 0 0 chr12 1054288 1054583 -143227906 - AluSp SINE Alu -18 295 1 2334 105 0 13 chr12 1054588 1054902 -143227587 - AluSq SINE Alu -3 310 1 2640 218 85 22 chr12 1054902 1055432 -143227057 + L1ME LINE L1 4710 5205 -1193 2308 98 0 3 chr12 1055432 1055727 -143226762 + AluSg SINE Alu 1 294 -16 2640 218 85 22 chr12 1055727 1056205 -143226284 + L1ME LINE L1 5205 5803 -595 2103 116 0 20 chr12 1056320 1056614 -143225875 - AluSx SINE Alu -24 288 1 310 277 85 66 chr12 1056618 1056889 -143225600 - L1M4 LINE L1 -867 5279 5004 1860 170 7 0 chr12 1056900 1057200 -143225289 + AluSx SINE Alu 2 303 -9 1583 158 37 30 chr12 1057206 1057504 -143224985 + AluJb SINE Alu 1 300 -12 230 284 45 0 chr12 1057504 1057571 -143224918 + L1ME LINE L1 5832 5901 -501 180 0 0 0 chr12 1057574 1057594 -143224895 + (A)n Simple_repeat Simple_repeat 1 20 0 498 125 38 0 chr12 1057726 1057806 -143224683 - AluS SINE Alu -5 305 223 2436 90 0 0 chr12 1058034 1058333 -143224156 + AluSq SINE Alu 1 299 -14 1238 48 0 0 chr12 1058503 1058650 -143223839 + AluY SINE Alu 158 304 -7 1121 272 108 23 chr12 1058658 1058932 -143223557 - L2 LINE L2 -381 2933 2615 2541 57 0 0 chr12 1058932 1059230 -143223259 - AluY SINE Alu -13 298 1 1121 272 108 23 chr12 1059230 1059345 -143223144 - L2 LINE L2 -699 2615 2511 2055 132 0 3 chr12 1059345 1059640 -143222849 - AluJb SINE Alu -18 294 1 1125 174 23 5 chr12 1059641 1059859 -143222630 - AluJo SINE Alu -5 307 86 795 265 31 0 chr12 1059860 1060056 -143222433 - L2 LINE L2 -796 2518 2317 326 183 50 0 chr12 1060113 1060173 -143222316 + LTR16C LTR ERVL 55 117 -374 256 262 39 19 chr12 1060419 1060522 -143221967 + MLT1L LTR MaLR 507 611 -4 494 236 180 60 chr12 1060538 1060771 -143221718 - MIR SINE MIR 0 262 2 1601 124 93 31 chr12 1060791 1061082 -143221407 + MER44D DNA MER2_type 1 579 -30 718 239 90 34 chr12 1061490 1061867 -143220622 + L2 LINE L2 1717 2207 -1107 1489 225 202 36 chr12 1061874 1061899 -143220590 + MLT1H1 LTR MaLR 1 21 -534 2321 93 0 7 chr12 1061899 1062190 -143220299 + AluSg SINE Alu 1 289 -21 1489 225 202 36 chr12 1062190 1062671 -143219818 + MLT1H1 LTR MaLR 21 555 0 303 242 126 11 chr12 1062671 1062766 -143219723 + L2 LINE L2 2209 2314 -1000 581 181 0 0 chr12 1062771 1062865 -143219624 - LTR16C LTR ERVL 0 491 398 * 978 270 78 82 chr12 1062860 1063507 -143218982 - MER50 LTR ERV1 -23 711 1 * 990 250 49 27 chr12 1063507 1063870 -143218619 - LTR16C LTR ERVL -84 407 1 272 184 0 0 chr12 1063892 1063941 -143218548 - L1MC4 LINE L1 -472 7570 7522 428 218 30 20 chr12 1063951 1064052 -143218437 + LTR40a LTR ERVL 4 105 -414 1197 50 0 69 chr12 1064054 1064214 -143218275 - AluSg SINE Alu -161 149 1 225 286 163 0 chr12 1064245 1064343 -143218146 - L1MC4a LINE L1 -1480 6328 6215 1438 140 5 14 chr12 1064380 1064602 -143217887 + AluSx SINE Alu 1 220 -92 1082 83 28 14 chr12 1064596 1064740 -143217749 + AluSg/x SINE Alu 144 289 -21 * 389 70 18 0 chr12 1064741 1064798 -143217691 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1428 161 33 140 chr12 1064907 1065019 -143217470 + MLT1B LTR MaLR 1 123 -267 1956 147 7 3 chr12 1065019 1065318 -143217171 + AluSx SINE Alu 1 300 -12 1428 161 33 140 chr12 1065318 1065626 -143216863 + MLT1B LTR MaLR 123 376 -14 1998 70 0 0 chr12 1065627 1065868 -143216621 + AluY SINE Alu 1 241 -70 1320 118 5 5 chr12 1065868 1066094 -143216395 + AluSg/x SINE Alu 101 326 0 783 233 0 0 chr12 1066100 1066246 -143216243 - MLT1B-int LTR MaLR -128 1607 1462 2389 89 3 0 chr12 1066450 1066752 -143215737 - AluSq SINE Alu -10 303 1 1144 117 25 0 chr12 1066754 1066916 -143215573 - AluSg/x SINE Alu -6 304 139 381 64 0 0 chr12 1066954 1067001 -143215488 - MLT1B LTR MaLR 0 390 344 400 107 36 0 chr12 1067009 1067065 -143215424 - MLT1C LTR MaLR -409 58 1 1291 181 17 181 chr12 1067066 1067206 -143215283 - MLT1C-int LTR MaLR -1 1370 1209 1794 163 0 7 chr12 1067206 1067494 -143214995 + AluJb SINE Alu 1 286 -26 1291 181 17 181 chr12 1067494 1067762 -143214727 - MLT1C-int LTR MaLR -162 1209 1029 1093 123 0 25 chr12 1067765 1067967 -143214522 + AluSg/x SINE Alu 134 331 0 370 313 0 18 chr12 1067967 1068110 -143214379 - MLT1B-int LTR MaLR -334 1037 956 282 337 0 0 chr12 1068185 1068286 -143214203 - MLT1B-int LTR MaLR -958 777 677 1610 191 56 7 chr12 1068342 1068811 -143213678 - MLT1B-int LTR MaLR -484 887 238 940 117 5 143 chr12 1068814 1069010 -143213479 - AluJb SINE Alu -10 302 134 2128 131 0 0 chr12 1069010 1069307 -143213182 - AluSx SINE Alu -15 297 1 645 197 8 8 chr12 1069307 1069434 -143213055 - MLT1B-int LTR MaLR -1244 127 1 1559 193 111 14 chr12 1069437 1069568 -143212921 - MLT1B LTR MaLR -3 387 270 2328 94 7 10 chr12 1069568 1069877 -143212612 - AluSq SINE Alu -5 308 1 1559 193 111 14 chr12 1069877 1070098 -143212391 - MLT1B LTR MaLR -120 270 1 2166 148 15 38 chr12 1070128 1070358 -143212131 - L1MB3 LINE L1 -1 6182 5963 2135 107 3 13 chr12 1070358 1070657 -143211832 - AluSq SINE Alu -17 296 1 2166 148 15 38 chr12 1070657 1070818 -143211671 - L1MB3 LINE L1 -220 5963 5800 2481 61 0 3 chr12 1070826 1071122 -143211367 - AluY SINE Alu -16 295 1 1176 83 0 0 chr12 1071122 1071266 -143211223 - AluY SINE Alu -167 144 1 1253 175 22 11 chr12 1071270 1071303 -143211186 - L1MB3 LINE L1 -978 5168 5137 1651 191 0 13 chr12 1071303 1071602 -143210887 - AluJo SINE Alu -17 295 1 1253 175 22 11 chr12 1071602 1071836 -143210653 - L1MB3 LINE L1 -1009 5137 4898 180 0 0 0 chr12 1071836 1071856 -143210633 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1459 133 18 0 chr12 1071870 1072096 -143210393 - AluSq SINE Alu -83 230 1 2399 88 3 0 chr12 1072096 1072391 -143210098 - AluSp SINE Alu -17 296 1 812 169 0 0 chr12 1072403 1072521 -143209968 - FLAM_C SINE Alu -25 118 1 1727 164 10 10 chr12 1072524 1072817 -143209672 - AluJo SINE Alu -14 298 6 310 284 55 0 chr12 1073011 1073120 -143209369 - HAL1 LINE L1 -701 1806 1692 2248 98 13 13 chr12 1073121 1073426 -143209063 - AluSq SINE Alu -8 305 1 397 226 226 8 chr12 1073427 1073684 -143208805 - HAL1 LINE L1 -1010 1497 1185 1897 179 0 3 chr12 1073707 1074019 -143208470 - AluJb SINE Alu -1 311 1 353 136 0 34 chr12 1074022 1074081 -143208408 - Alu SINE Alu -2 300 244 332 163 0 0 chr12 1074078 1074127 -143208362 - Alu SINE Alu -251 49 1 * 928 241 0 19 chr12 1074130 1074346 -143208143 - AluJb SINE Alu -14 298 87 266 297 280 3 chr12 1074348 1074641 -143207848 - HAL1 LINE L1 -1357 1150 777 2465 170 28 35 chr12 1074641 1075101 -143207388 - MSTB2 LTR MaLR 0 457 1 293 329 13 0 chr12 1075570 1075649 -143206840 - HAL1 LINE L1 -2427 80 1 374 303 116 7 chr12 1075827 1075982 -143206507 - MIR3 SINE MIR -36 172 1 264 30 0 0 chr12 1077092 1077125 -143205364 + (TG)n Simple_repeat Simple_repeat 1 33 0 450 254 134 106 chr12 1077240 1077895 -143204594 - L1M2 LINE L1 -5519 1330 696 1289 126 0 6 chr12 1080195 1080370 -143202119 - AluSx SINE Alu -138 174 1 1881 200 28 45 chr12 1080382 1080556 -143201933 + LTR40c LTR ERVL 35 210 -255 2422 48 31 0 chr12 1080556 1080845 -143201644 + AluY SINE Alu 1 298 -13 1881 200 28 45 chr12 1080845 1081095 -143201394 + LTR40c LTR ERVL 210 452 -13 767 205 0 0 chr12 1081228 1081345 -143201144 - FLAM_C SINE Alu -25 118 2 320 163 50 75 chr12 1081346 1081426 -143201063 + MER112 DNA MER1_type 38 115 -145 244 233 17 0 chr12 1081426 1081486 -143201003 - MLT1F1 LTR MaLR -7 560 500 345 271 0 0 chr12 1081572 1081642 -143200847 + MER112 DNA MER1_type 186 255 -5 2309 75 56 31 chr12 1081657 1081795 -143200694 + THE1C LTR MaLR 8 141 -234 1472 131 186 8 chr12 1081795 1082047 -143200442 - AluSg1 SINE Alu -12 297 1 2309 75 56 31 chr12 1082047 1082267 -143200222 + THE1C LTR MaLR 141 375 0 261 300 104 86 chr12 1082275 1082939 -143199550 - L2 LINE L2 -661 2653 1978 2011 140 3 0 chr12 1083228 1083528 -143198961 + AluJb SINE Alu 1 301 -11 180 152 0 0 chr12 1083959 1083992 -143198497 + A-rich Low_complexity Low_complexity 1 33 0 1004 149 11 6 chr12 1084041 1084216 -143198273 - MER2 DNA MER2_type -137 208 33 444 312 48 16 chr12 1084471 1084782 -143197707 - L1M4 LINE L1 -861 5285 4965 2311 132 28 28 chr12 1084858 1084924 -143197565 - THE1B LTR MaLR 0 364 299 2071 130 10 0 chr12 1084924 1085225 -143197264 - AluSq SINE Alu -9 304 1 2311 132 28 28 chr12 1085225 1085522 -143196967 - THE1B LTR MaLR -64 300 1 597 231 124 0 chr12 1085715 1085901 -143196588 - MER46C DNA MER2_type -129 209 1 471 247 81 118 chr12 1085925 1086508 -143195981 - L1M4 LINE L1 -1429 4717 4157 851 182 0 0 chr12 1086508 1086640 -143195849 - FLAM_C SINE Alu 0 133 2 229 243 0 29 chr12 1087926 1087996 -143194493 + T-rich Low_complexity Low_complexity 1 68 0 2086 98 35 0 chr12 1088202 1088489 -143194000 + AluSx SINE Alu 1 297 -15 2354 92 0 0 chr12 1088874 1089169 -143193320 - AluSx SINE Alu -9 303 9 2119 144 28 51 chr12 1089488 1089570 -143192919 + MER7A DNA MER2_type 2 84 -2954 1581 167 30 17 chr12 1089570 1089870 -143192619 + AluJb SINE Alu 1 304 -8 2119 144 28 51 chr12 1089870 1090142 -143192347 + MER7A DNA MER2_type 84 346 0 521 279 57 13 chr12 1090971 1091129 -143191360 + MER5A DNA MER1_type 1 165 -24 2206 96 3 20 chr12 1091174 1091476 -143191013 - AluSg SINE Alu -11 299 3 214 259 19 0 chr12 1091734 1091788 -143190701 + MER5A DNA MER1_type 135 189 0 2013 142 3 19 chr12 1091994 1092169 -143190320 - AluSx SINE Alu -6 306 137 2370 91 0 3 chr12 1092169 1092465 -143190024 - AluY SINE Alu -16 295 1 2013 142 3 19 chr12 1092465 1092600 -143189889 - AluSx SINE Alu -175 137 1 1087 131 12 0 chr12 1092600 1092760 -143189729 - AluSg/x SINE Alu -17 293 132 2276 94 10 3 chr12 1092760 1093059 -143189430 - AluSx SINE Alu -11 301 1 829 211 0 0 chr12 1093424 1093557 -143188932 + FLAM_A SINE Alu 1 133 0 26 30 0 0 chr12 1093557 1093590 -143188899 + AT_rich Low_complexity Low_complexity 1 33 0 2521 58 0 0 chr12 1094770 1095064 -143187425 + AluY SINE Alu 1 294 -17 2254 103 0 3 chr12 1095504 1095805 -143186684 - AluSq SINE Alu -13 300 1 295 233 217 16 chr12 1096639 1096768 -143185721 + L3 LINE CR1 1134 1288 -289 2367 71 0 7 chr12 1096892 1097189 -143185300 + AluY SINE Alu 1 295 -16 198 0 0 0 chr12 1097193 1097215 -143185274 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 505 269 38 19 chr12 1097215 1097375 -143185114 + AluJb SINE Alu 130 292 -20 985 79 67 79 chr12 1098837 1099015 -143183474 - Tigger2a DNA MER2_type -57 387 212 1907 114 0 0 chr12 1099018 1099273 -143183216 + AluSc SINE Alu 3 257 -52 242 145 29 87 chr12 1099285 1099354 -143183135 + AluSc SINE Alu 237 301 -1 * 1217 167 17 43 chr12 1099332 1099566 -143182923 - Tigger2a DNA MER2_type -206 228 1 2210 108 0 0 chr12 1099988 1100283 -143182206 - AluSg SINE Alu 0 310 16 395 332 79 8 chr12 1102141 1102394 -143180095 + L1MB1 LINE L1 5098 5368 -778 342 293 126 24 chr12 1103532 1103699 -143178790 + L1MB1 LINE L1 5575 5758 -2050 2081 155 71 3 chr12 1103729 1104083 -143178406 - L1MB3 LINE L1 -1 6182 5805 2325 78 3 0 chr12 1104096 1104390 -143178099 + THE1A LTR MaLR 1 295 -60 959 122 0 0 chr12 1104387 1104518 -143177971 + THE1A LTR MaLR 223 353 -2 * 397 304 40 16 chr12 1104582 1104707 -143177782 - MIR SINE MIR -61 147 20 460 224 91 91 chr12 1105141 1105246 -143177243 + MIR SINE MIR 53 157 -105 1183 179 52 9 chr12 1105246 1105475 -143177014 + L1MB1 LINE L1 5929 6167 -1 460 224 91 91 chr12 1105475 1105579 -143176910 + MIR SINE MIR 156 262 0 2099 111 4 0 chr12 1105628 1105931 -143176558 - AluSg SINE Alu 0 304 1 1017 70 39 0 chr12 1105931 1106059 -143176430 - AluSg SINE Alu -177 133 1 2221 114 3 10 chr12 1106091 1106397 -143176092 - AluSq SINE Alu -9 304 1 22 0 0 0 chr12 1108020 1108042 -143174447 + AT_rich Low_complexity Low_complexity 1 22 0 1688 149 0 55 chr12 1108278 1108587 -143173902 - AluJo SINE Alu 0 312 21 180 111 0 0 chr12 1108608 1108635 -143173854 + (TTG)n Simple_repeat Simple_repeat 1 27 0 186 133 0 0 chr12 1109077 1109107 -143173382 + (TTA)n Simple_repeat Simple_repeat 2 31 0 180 111 0 0 chr12 1110860 1110887 -143171602 + (TTA)n Simple_repeat Simple_repeat 2 28 0 588 95 0 0 chr12 1113073 1113157 -143169332 + (TTA)n Simple_repeat Simple_repeat 2 85 0 1971 108 41 0 chr12 1113160 1113429 -143169060 - AluSx SINE Alu -32 280 1 246 355 127 23 chr12 1113565 1113785 -143168704 - L2 LINE L2 -260 3053 2811 423 289 90 25 chr12 1113910 1114111 -143168378 - L2 LINE L2 -540 2774 2561 2415 77 0 0 chr12 1114239 1114537 -143167952 - AluSg SINE Alu -12 298 1 735 303 47 7 chr12 1114540 1114837 -143167652 + HsTC2 DNA Tc2 5 313 -1585 647 193 30 86 chr12 1114844 1114919 -143167570 + HsTC2 DNA Tc2 1707 1785 -113 1936 146 17 0 chr12 1114919 1115214 -143167275 + AluSx SINE Alu 1 300 -12 647 193 30 86 chr12 1115214 1115335 -143167154 + HsTC2 DNA Tc2 1785 1892 -6 510 157 0 0 chr12 1116105 1116226 -143166263 + (TA)n Simple_repeat Simple_repeat 2 122 0 2209 115 0 0 chr12 1116263 1116559 -143165930 - AluSx SINE Alu -16 296 1 2088 135 7 3 chr12 1116647 1116950 -143165539 - AluSx SINE Alu -8 304 1 1868 122 0 0 chr12 1117391 1117637 -143164852 + AluSx SINE Alu 4 249 -63 1855 158 17 7 chr12 1118171 1118468 -143164021 - AluJb SINE Alu -12 300 1 367 312 39 44 chr12 1118941 1119146 -143163343 - L1ME3A LINE L1 -5 6165 5962 812 291 91 65 chr12 1119386 1119942 -143162547 - L1MEc LINE L1 -5485 911 326 2215 106 0 13 chr12 1119942 1120253 -143162236 - AluSx SINE Alu -3 309 3 812 291 91 65 chr12 1120253 1120507 -143161982 - L1MEc LINE L1 -6070 326 80 1492 289 116 42 chr12 1120535 1121414 -143161075 - L2 LINE L2 -550 2764 1821 29 0 0 0 chr12 1121428 1121457 -143161032 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr12 1121465 1121490 -143160999 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 279 273 91 9 chr12 1121574 1121684 -143160805 + Charlie2 DNA MER1_type 94 212 -2650 2324 250 180 11 chr12 1121840 1122076 -143160413 - L2 LINE L2 -1 3312 3117 2405 90 0 6 chr12 1122076 1122388 -143160101 - AluSg SINE Alu 0 310 1 2324 250 180 11 chr12 1122388 1123352 -143159137 - L2 LINE L2 -196 3117 1888 793 304 37 72 chr12 1123490 1123973 -143158516 - LTR67 LTR ERVL -87 470 5 438 301 147 6 chr12 1124068 1124224 -143158265 + MER91A DNA MER1_type 19 196 0 659 250 37 28 chr12 1124836 1125052 -143157437 - L2 LINE L2 -4 3309 3092 526 278 19 44 chr12 1125132 1125402 -143157087 - L1MC5 LINE L1 -48 7913 7651 1222 262 118 19 chr12 1125452 1125936 -143156553 - L2 LINE L2 -363 2951 2420 764 171 0 0 chr12 1125959 1126076 -143156413 - FLAM_C SINE Alu -24 119 3 241 242 81 0 chr12 1126076 1126175 -143156314 - L2 LINE L2 -950 2364 2258 277 184 0 0 chr12 1127297 1127346 -143155143 - Charlie1 DNA MER1_type 0 2761 2713 * 723 126 59 0 chr12 1127335 1127454 -143155035 - Charlie1 DNA MER1_type -865 1896 1771 298 116 58 43 chr12 1127565 1127634 -143154855 + AluSp/q SINE Alu 221 290 -13 1303 111 6 6 chr12 1127668 1127849 -143154640 + AluSx SINE Alu 6 186 -126 2294 94 7 3 chr12 1127903 1128210 -143154279 + AluSq SINE Alu 3 310 -3 1508 166 150 17 chr12 1128352 1128713 -143153776 + L1MB7 LINE L1 5732 6140 -44 1465 125 167 0 chr12 1128714 1128954 -143153535 + AluSg SINE Alu 1 280 -30 1843 137 7 0 chr12 1129003 1129295 -143153194 - AluSx SINE Alu -18 294 1 454 168 0 56 chr12 1129347 1129454 -143153035 - AluJb SINE Alu -7 305 205 2400 60 0 3 chr12 1130586 1130884 -143151605 + AluY SINE Alu 1 297 -14 903 137 0 0 chr12 1130885 1131009 -143151480 - AluJo/FLAM SINE Alu -188 124 1 1030 96 10 96 chr12 1131010 1131219 -143151270 - L1MA7 LINE L1 -122 6169 5979 1081 79 0 0 chr12 1131222 1131348 -143151141 - AluSp SINE Alu -187 126 1 657 163 120 34 chr12 1131349 1131406 -143151083 - L1 LINE L1 -745 5401 5350 1553 180 7 40 chr12 1131406 1131706 -143150783 - AluJo SINE Alu -20 292 3 657 163 120 34 chr12 1131706 1131857 -143150632 - L1 LINE L1 -796 5350 5175 * 816 229 81 34 chr12 1131854 1132177 -143150312 - L1 LINE L1 -2848 3298 2961 1463 180 31 66 chr12 1132244 1132561 -143149928 - AluJo SINE Alu -6 306 1 803 161 0 0 chr12 1132572 1132696 -143149793 - FLAM_A SINE Alu -9 124 1 673 226 48 6 chr12 1132735 1132903 -143149586 + MLT1C LTR MaLR 1 175 -292 1869 138 17 17 chr12 1132907 1133198 -143149291 + AluSq SINE Alu 1 291 -22 254 130 0 19 chr12 1133198 1133252 -143149237 + (GGGAA)n Simple_repeat Simple_repeat 1 53 0 1900 109 4 4 chr12 1133501 1133758 -143148731 - AluSq SINE Alu -56 257 1 276 206 52 0 chr12 1134178 1134270 -143148219 + HsTC2 DNA Tc2 14 1835 -63 2628 34 3 0 chr12 1134483 1134778 -143147711 + AluY SINE Alu 1 296 -15 507 158 18 70 chr12 1135006 1135120 -143147369 + MER3 DNA MER1_type 38 145 -64 316 203 127 17 chr12 1135697 1135815 -143146674 - L1M4 LINE L1 -780 5366 5236 2300 84 0 20 chr12 1136018 1136317 -143146172 + AluSc SINE Alu 3 295 -14 1842 103 58 0 chr12 1136390 1136651 -143145838 + AluSx SINE Alu 11 286 -26 1459 140 17 92 chr12 1136683 1136884 -143145605 - Tigger3(Golem) DNA MER2_type -956 275 101 2130 98 11 0 chr12 1136884 1137160 -143145329 - AluSc SINE Alu -30 279 1 1459 140 17 92 chr12 1137160 1137250 -143145239 - Tigger3(Golem) DNA MER2_type -1130 101 6 1825 156 24 0 chr12 1137294 1137582 -143144907 - AluSg SINE Alu 0 310 16 2126 135 10 0 chr12 1138476 1138772 -143143717 - AluSq SINE Alu -14 299 1 498 125 38 0 chr12 1139000 1139080 -143143409 + AluS SINE Alu 225 307 -5 1008 236 11 15 chr12 1190369 1190640 -143091849 - L1MEc LINE L1 -5509 887 618 698 185 122 70 chr12 1190661 1190796 -143091693 + Charlie1 DNA MER1_type 2472 2599 -162 1897 141 10 36 chr12 1190796 1191102 -143091387 - AluJo SINE Alu -14 298 1 698 185 122 70 chr12 1191102 1191179 -143091310 + Charlie1 DNA MER1_type 2599 2671 -90 2278 100 3 0 chr12 1191179 1191478 -143091011 - AluSp SINE Alu -13 300 1 698 185 122 70 chr12 1191478 1191534 -143090955 + Charlie1 DNA MER1_type 2671 2755 -6 338 176 28 65 chr12 1191845 1191921 -143090568 - L1MEc LINE L1 -5997 208 136 1258 203 128 40 chr12 1191921 1192350 -143090139 + MLT1C LTR MaLR 1 467 0 338 176 28 65 chr12 1192350 1192381 -143090108 - L1MEc LINE L1 -6069 136 105 233 350 75 12 chr12 1192931 1193011 -143089478 + L2 LINE L2 3141 3225 -47 226 393 98 6 chr12 1193001 1193164 -143089325 + L2 LINE L2 2680 2857 -457 * 2371 97 0 0 chr12 1193538 1193847 -143088642 - AluSc SINE Alu 0 309 1 292 306 9 54 chr12 1193850 1193961 -143088528 + MIR SINE MIR 64 169 -93 2331 67 7 10 chr12 1194018 1194315 -143088174 + AluSx SINE Alu 1 296 -16 349 109 77 13 chr12 1194336 1194492 -143087997 + (TA)n Simple_repeat Simple_repeat 1 166 0 248 154 31 15 chr12 1194503 1194568 -143087921 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 344 107 87 17 chr12 1194578 1194869 -143087620 + (TA)n Simple_repeat Simple_repeat 1 311 0 284 294 83 9 chr12 1195306 1195415 -143087074 + MIR SINE MIR 12 128 -134 3055 171 11 11 chr12 1195514 1196064 -143086425 + MER44D DNA MER2_type 1 605 0 1185 140 77 31 chr12 1196790 1197012 -143085477 - MER46A DNA MER2_type -4 232 1 946 175 22 11 chr12 1197156 1197339 -143085150 + MER33 DNA MER1_type 2 186 -138 472 197 228 0 chr12 1197751 1197878 -143084611 + MER5A DNA MER1_type 31 186 -3 299 130 0 0 chr12 1197888 1197934 -143084555 + tRNA-Gln-CAG tRNA tRNA 1 46 -29 1185 259 93 19 chr12 1198796 1199279 -143083210 - L1MC/D LINE L1 -2014 5794 5276 1848 139 0 17 chr12 1199361 1199649 -143082840 - AluSx SINE Alu -24 288 6 25 0 0 0 chr12 1199657 1199682 -143082807 + AT_rich Low_complexity Low_complexity 1 25 0 399 159 0 0 chr12 1199683 1199746 -143082743 - FLAM_A SINE Alu -34 99 37 468 0 0 0 chr12 1199780 1199832 -143082657 + (TG)n Simple_repeat Simple_repeat 2 53 0 676 315 116 35 chr12 1199897 1200526 -143081963 - L1MC/D LINE L1 -1316 4830 4151 6546 152 33 28 chr12 1200709 1201065 -143081424 - L1PB1 LINE L1 -1 6150 5798 345 100 0 0 chr12 1201065 1201115 -143081374 + (TA)n Simple_repeat Simple_repeat 1 50 0 6546 152 33 28 chr12 1201115 1201474 -143081015 - L1PB1 LINE L1 -353 5798 5443 2351 85 0 0 chr12 1201474 1201767 -143080722 - AluSx SINE Alu -19 293 1 6546 152 33 28 chr12 1201767 1203071 -143079418 - L1PB1 LINE L1 -708 5443 4103 4348 43 2 6 chr12 1203071 1203609 -143078880 - L1PA4 LINE L1 0 6155 5620 6546 152 33 28 chr12 1203609 1203852 -143078637 - L1PB1 LINE L1 -2048 4103 3863 914 136 11 87 chr12 1204642 1204826 -143077663 - THE1B LTR MaLR 0 364 195 24 0 0 0 chr12 1205040 1205064 -143077425 + AT_rich Low_complexity Low_complexity 1 24 0 2151 111 0 0 chr12 1205064 1205352 -143077137 - AluSx SINE Alu -24 288 1 27 0 0 0 chr12 1205592 1205619 -143076870 + AT_rich Low_complexity Low_complexity 1 27 0 1902 150 3 3 chr12 1205858 1206144 -143076345 - AluJb SINE Alu -21 291 6 22 0 0 0 chr12 1206936 1206958 -143075531 + AT_rich Low_complexity Low_complexity 1 22 0 2207 218 29 21 chr12 1207049 1207572 -143074917 + L1MC3 LINE L1 7258 7784 -1 2277 102 0 3 chr12 1208367 1208671 -143073818 + AluSq SINE Alu 1 303 -10 1719 130 18 11 chr12 1210387 1210663 -143071826 - L1PB3 LINE L1 -94 6060 5783 360 0 0 0 chr12 1210664 1210704 -143071785 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 230 326 0 0 chr12 1210704 1210790 -143071699 + L1MC4 LINE L1 6615 6700 -1342 252 0 0 0 chr12 1210805 1210833 -143071656 + (CA)n Simple_repeat Simple_repeat 2 29 0 2692 138 77 30 chr12 1210836 1211486 -143071003 + L1P5 LINE L1 4962 5652 -502 1840 142 36 26 chr12 1211486 1211789 -143070700 + AluSx SINE Alu 1 306 -6 2692 138 77 30 chr12 1211789 1211922 -143070567 + L1P5 LINE L1 5652 5777 -377 2322 65 17 3 chr12 1211927 1212221 -143070268 - AluY SINE Alu -13 298 1 34 0 0 0 chr12 1212313 1212347 -143070142 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr12 1212522 1212555 -143069934 + AT_rich Low_complexity Low_complexity 1 33 0 1989 127 7 7 chr12 1212678 1212987 -143069502 - AluSg SINE Alu 0 309 1 330 307 77 29 chr12 1213122 1213455 -143069034 - L1M4 LINE L1 -660 5518 5174 1195 191 4 27 chr12 1213546 1213802 -143068687 - AluJb SINE Alu -9 303 54 230 311 0 0 chr12 1213907 1213981 -143068508 - L1P LINE L1 -1186 4960 4887 562 250 55 0 chr12 1214156 1214284 -143068205 - L2 LINE L2 -1278 2036 1902 261 297 226 13 chr12 1214282 1214437 -143068052 + L3 LINE CR1 1251 1438 -139 * 22 35 0 0 chr12 1214638 1214667 -143067822 + AT_rich Low_complexity Low_complexity 1 29 0 383 295 114 32 chr12 1214727 1214871 -143067618 - HAL1b LINE L1 -523 825 694 2194 81 3 69 chr12 1214871 1215203 -143067286 - AluSp SINE Alu -3 310 1 383 295 114 32 chr12 1215203 1215339 -143067150 - HAL1b LINE L1 -654 694 522 2071 161 3 3 chr12 1215651 1215973 -143066516 - MER1B DNA MER1_type -17 322 1 217 263 70 0 chr12 1216003 1216060 -143066429 - L3 LINE CR1 -267 1310 1250 189 295 16 16 chr12 1216166 1216227 -143066262 - L3 LINE CR1 -691 886 826 217 283 0 0 chr12 1216278 1216338 -143066151 + MIR SINE MIR 92 151 -111 246 358 129 0 chr12 1216567 1216768 -143065721 - L3 LINE CR1 -797 780 554 1660 130 103 4 chr12 1216907 1217169 -143065320 + AluSx SINE Alu 5 292 -20 904 147 0 7 chr12 1217210 1217346 -143065143 - FLAM_C SINE Alu -8 135 1 21 57 0 0 chr12 1218330 1218365 -143064124 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr12 1219157 1219179 -143063310 + AT_rich Low_complexity Low_complexity 1 22 0 424 233 60 0 chr12 1219926 1220042 -143062447 - MLT1G LTR MaLR -11 579 457 2087 149 3 0 chr12 1220157 1220465 -143062024 - AluSx SINE Alu -3 309 1 327 256 97 67 chr12 1220486 1220681 -143061808 - MLT1G LTR MaLR -303 287 87 2266 64 7 0 chr12 1220682 1221090 -143061399 - AluY SINE Alu 0 410 1 312 140 0 0 chr12 1221175 1221225 -143061264 - MLT1G LTR MaLR -533 62 13 2311 46 0 87 chr12 1221759 1222082 -143060407 - AluY SINE Alu -15 296 2 870 201 115 0 chr12 1222252 1222461 -143060028 - L1MB7 LINE L1 -19 6165 5933 661 125 133 0 chr12 1222443 1222571 -143059918 + THE1B-int LTR MaLR 1436 1580 0 * 1967 139 50 36 chr12 1222571 1222930 -143059559 + THE1B LTR MaLR 1 364 0 1171 169 12 4 chr12 1222931 1223180 -143059309 - L1M4 LINE L1 -2085 4061 3811 2101 109 3 3 chr12 1224156 1224460 -143058029 - AluSc SINE Alu -1 308 5 1602 195 7 13 chr12 1224575 1224873 -143057616 - AluJb SINE Alu -16 296 1 2315 101 3 7 chr12 1224930 1225236 -143057253 - AluSq SINE Alu -8 305 1 894 269 100 3 chr12 1225743 1226052 -143056437 + LTR16A LTR ERVL 106 444 -6 247 333 41 20 chr12 1226570 1226765 -143055724 - L1ME4a LINE L1 -198 5923 5725 221 232 125 0 chr12 1226898 1226954 -143055535 - MER91C DNA MER1_type -33 107 45 221 325 112 0 chr12 1227426 1227521 -143054968 - MIR SINE MIR -18 190 75 213 39 0 0 chr12 1227804 1227830 -143054659 + (T)n Simple_repeat Simple_repeat 1 26 0 1688 211 7 0 chr12 1228638 1228936 -143053553 + AluJo SINE Alu 1 300 -12 24 53 0 0 chr12 1229201 1229239 -143053250 + AT_rich Low_complexity Low_complexity 1 38 0 210 244 44 0 chr12 1229654 1229699 -143052790 + MIR SINE MIR 5 51 -211 * 232 293 13 0 chr12 1229696 1229771 -143052718 + MIR SINE MIR 153 228 -34 12794 123 36 70 chr12 1231357 1231986 -143050503 - Tigger1 DNA MER2_type 0 2418 1769 2295 94 0 3 chr12 1231986 1232285 -143050204 - AluSq SINE Alu -15 298 1 12794 123 36 70 chr12 1232285 1233029 -143049460 - Tigger1 DNA MER2_type -649 1769 1001 902 229 0 0 chr12 1233029 1233195 -143049294 - FRAM SINE Alu 0 166 1 12794 123 36 70 chr12 1233195 1234323 -143048166 - Tigger1 DNA MER2_type -1417 1001 1 590 219 21 139 chr12 1235186 1235423 -143047066 + L2 LINE L2 3104 3312 -1 260 352 19 0 chr12 1235757 1235865 -143046624 + L2 LINE L2 2691 2800 -514 2815 16 0 0 chr12 1235946 1236257 -143046232 - AluYa5 SINE Alu 0 311 1 220 291 0 18 chr12 1236274 1236329 -143046160 + L2 LINE L2 3219 3272 0 270 0 0 0 chr12 1236704 1236734 -143045755 + (TG)n Simple_repeat Simple_repeat 1 30 0 2060 118 11 3 chr12 1237276 1237563 -143044926 - AluSx SINE Alu -23 289 1 2125 99 57 0 chr12 1237967 1238249 -143044240 + AluSp SINE Alu 1 298 -15 1690 151 11 35 chr12 1239111 1239396 -143043093 - AluJo SINE Alu -13 299 22 25 65 0 0 chr12 1239661 1239707 -143042782 + AT_rich Low_complexity Low_complexity 1 46 0 742 186 16 0 chr12 1240184 1240313 -143042176 + AluJo/FLAM SINE Alu 2 132 -170 2366 80 0 7 chr12 1240313 1240614 -143041875 + AluSg SINE Alu 10 308 -2 21 36 0 0 chr12 1240768 1240796 -143041693 + AT_rich Low_complexity Low_complexity 1 28 0 1542 185 36 26 chr12 1241192 1241375 -143041114 - AluJo SINE Alu -1 311 122 2179 109 0 0 chr12 1241375 1241659 -143040830 - AluSg SINE Alu -26 284 1 1542 185 36 26 chr12 1241659 1241783 -143040706 - AluJo SINE Alu -190 122 1 25 0 0 0 chr12 1242182 1242207 -143040282 + AT_rich Low_complexity Low_complexity 1 25 0 2022 143 0 13 chr12 1243277 1243585 -143038904 - AluSx SINE Alu -8 304 1 775 188 0 0 chr12 1243884 1244017 -143038472 - FLAM_C SINE Alu 0 133 1 549 362 72 29 chr12 1244175 1244454 -143038035 - L2 LINE L2 0 3272 2982 30 0 0 0 chr12 1244505 1244535 -143037954 + AT_rich Low_complexity Low_complexity 1 30 0 266 290 15 8 chr12 1244836 1244967 -143037522 + L1MEc LINE L1 41 172 -6224 627 199 0 30 chr12 1245532 1245663 -143036826 - FLAM_C SINE Alu -6 127 1 326 289 107 0 chr12 1248435 1248556 -143033933 - MIR3 SINE MIR -65 143 10 282 233 0 0 chr12 1249880 1249966 -143032523 + (CATA)n Simple_repeat Simple_repeat 2 87 0 23 0 0 0 chr12 1249981 1250004 -143032485 + AT_rich Low_complexity Low_complexity 1 23 0 683 261 19 97 chr12 1250017 1250389 -143032100 - MLT2C1 LTR ERVL -51 346 4 2305 90 0 3 chr12 1250588 1250912 -143031577 + AluSx SINE Alu 1 323 0 214 277 0 62 chr12 1251451 1251516 -143030973 - L2 LINE L2 -250 3063 3003 786 175 27 33 chr12 1251563 1251746 -143030743 - L1ME1 LINE L1 -9 6157 5976 436 285 76 37 chr12 1251869 1252308 -143030181 + MLT1L LTR MaLR 116 615 0 1748 169 24 3 chr12 1252948 1253238 -143029251 - AluJb SINE Alu -14 298 3 594 91 0 0 chr12 1253257 1253356 -143029133 + (TC)n Simple_repeat Simple_repeat 2 100 0 513 0 0 0 chr12 1253356 1253413 -143029076 + (CA)n Simple_repeat Simple_repeat 2 58 0 2190 138 0 0 chr12 1253427 1253731 -143028758 - AluSx SINE Alu -8 304 1 188 301 68 27 chr12 1253755 1253828 -143028661 - MIR SINE MIR -151 111 36 219 36 0 0 chr12 1254353 1254381 -143028108 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1760 168 14 7 chr12 1254387 1254678 -143027811 - AluJb SINE Alu -19 293 1 2213 113 87 8 chr12 1255038 1255418 -143027071 - MSTA LTR MaLR 0 428 19 594 94 0 0 chr12 1255420 1255505 -143026984 - MSTA LTR MaLR -325 103 19 618 71 0 0 chr12 1255507 1255592 -143026897 - MSTA LTR MaLR -325 103 19 615 71 0 0 chr12 1255594 1255679 -143026810 - MSTA LTR MaLR -325 103 19 726 87 0 0 chr12 1255681 1255784 -143026705 - MSTA LTR MaLR -325 103 1 2279 97 0 26 chr12 1255939 1256250 -143026239 + AluSq SINE Alu 1 303 -10 2498 56 0 0 chr12 1257004 1257308 -143025181 - AluY SINE Alu -7 304 1 236 243 14 14 chr12 1257406 1257480 -143025009 + (TA)n Simple_repeat Simple_repeat 2 75 0 399 175 29 29 chr12 1257647 1257750 -143024739 + MER104 DNA Tc2 31 133 -47 1908 169 7 0 chr12 1258826 1259122 -143023367 + AluJb SINE Alu 1 298 -14 23 0 0 0 chr12 1259174 1259197 -143023292 + AT_rich Low_complexity Low_complexity 1 23 0 2254 91 0 0 chr12 1259521 1259808 -143022681 - AluSx SINE Alu -25 287 1 352 278 91 32 chr12 1261468 1261655 -143020834 - MIR SINE MIR 0 262 65 351 203 0 0 chr12 1261810 1261889 -143020600 + (TA)n Simple_repeat Simple_repeat 1 79 0 221 287 35 0 chr12 1262770 1262853 -143019636 + MIR SINE MIR 79 164 -98 801 100 77 8 chr12 1263331 1263461 -143019028 + MER85 DNA T2_type 1 139 0 414 105 92 0 chr12 1264306 1264382 -143018107 + MER53 DNA DNA 1 83 -106 466 321 49 16 chr12 1264476 1264660 -143017829 - MIR SINE MIR -39 223 34 1287 129 53 31 chr12 1264691 1264916 -143017573 - MER30 DNA MER1_type 0 230 1 1162 93 6 47 chr12 1265234 1265406 -143017083 - AluSq SINE Alu -13 300 136 2282 105 0 0 chr12 1265408 1265703 -143016786 - AluSx SINE Alu -1 311 17 391 260 182 13 chr12 1266068 1266222 -143016267 - MER5A DNA MER1_type 0 189 10 2123 105 31 3 chr12 1267164 1267450 -143015039 + AluSc SINE Alu 1 294 -15 2232 77 7 3 chr12 1267612 1267898 -143014591 - AluSp SINE Alu -26 287 1 2050 126 0 32 chr12 1268011 1268320 -143014169 - AluSq SINE Alu -14 299 1 2126 128 21 3 chr12 1268989 1269326 -143013163 - MER61A LTR ERV1 0 343 1 2057 134 0 3 chr12 1269907 1270206 -143012283 + AluSx SINE Alu 3 300 -12 1134 139 6 0 chr12 1270208 1270381 -143012108 + AluSg/x SINE Alu 135 308 -2 230 319 113 34 chr12 1270660 1270898 -143011591 + MIR SINE MIR 5 261 -1 26 64 0 0 chr12 1271053 1271100 -143011389 + AT_rich Low_complexity Low_complexity 1 47 0 348 24 0 0 chr12 1271112 1271153 -143011336 + (CA)n Simple_repeat Simple_repeat 2 42 0 480 355 56 21 chr12 1271183 1271417 -143011072 - MIR SINE MIR -15 247 6 2476 318 100 35 chr12 1274068 1275328 -143007161 + L2 LINE L2 866 2268 -1046 2318 105 0 0 chr12 1275328 1275623 -143006866 - AluSx SINE Alu -17 295 1 2476 318 100 35 chr12 1275623 1276080 -143006409 + L2 LINE L2 2268 2694 -620 1271 148 10 5 chr12 1276086 1276288 -143006201 - AluJb SINE Alu -10 302 100 485 304 217 34 chr12 1276347 1276848 -143005641 + L2 LINE L2 2720 3310 -3 605 247 181 0 chr12 1277072 1277254 -143005235 + MER58C DNA MER1_type 1 215 0 886 286 95 14 chr12 1277323 1277680 -143004809 + L2 LINE L2 2925 3310 -3 1313 187 78 33 chr12 1278323 1278654 -143003835 - MER7A DNA MER2_type -1 345 2 1945 119 51 10 chr12 1278670 1278965 -143003524 - AluSx SINE Alu -5 307 1 275 273 0 0 chr12 1279490 1279556 -143002933 - L2 LINE L2 -3 3310 3245 360 331 173 0 chr12 1279854 1279993 -143002496 - MER5A DNA MER1_type -15 174 12 220 200 0 0 chr12 1280698 1280738 -143001751 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr12 1281065 1281093 -143001396 + AT_rich Low_complexity Low_complexity 1 28 0 1746 161 39 32 chr12 1281149 1281459 -143001030 + AluJo SINE Alu 1 312 0 1591 178 44 0 chr12 1281628 1281898 -143000591 + AluJo SINE Alu 1 282 -30 396 0 0 0 chr12 1281900 1281944 -143000545 + (CA)n Simple_repeat Simple_repeat 2 45 0 1801 152 44 39 chr12 1282720 1283129 -142999360 - L1MA9 LINE L1 0 7731 7321 2010 142 7 0 chr12 1283132 1283427 -142999062 - AluSx SINE Alu -15 297 1 4954 138 51 36 chr12 1283427 1284795 -142997694 - L1MA9 LINE L1 -487 7244 5858 4046 182 44 9 chr12 1284802 1285659 -142996830 - L1MA9 LINE L1 -1806 5759 4873 1293 194 38 19 chr12 1285693 1285956 -142996533 + AluJo SINE Alu 24 291 -21 4078 232 80 74 chr12 1285981 1286455 -142996034 - L1MA9 LINE L1 -2703 4862 4392 2222 102 27 0 chr12 1286455 1286749 -142995740 - AluSx SINE Alu -10 302 1 4078 232 80 74 chr12 1286749 1288198 -142994291 - L1MA9 LINE L1 -3173 4392 2928 2205 93 3 3 chr12 1288198 1288488 -142994001 - AluY SINE Alu -20 291 2 4078 232 80 74 chr12 1288488 1289313 -142993176 - L1MA9 LINE L1 -4637 2928 2109 2258 119 0 0 chr12 1289641 1289944 -142992545 + AluSx SINE Alu 3 305 -7 557 257 72 64 chr12 1289999 1290497 -142991992 + L1MC5 LINE L1 7265 7766 -195 1041 186 32 6 chr12 1290613 1290898 -142991591 + MER47B DNA MER2_type 29 418 0 395 320 46 5 chr12 1291020 1291214 -142991275 + L1ME LINE L1 4610 4811 -1335 687 303 90 23 chr12 1291429 1291537 -142990952 + L1ME LINE L1 5051 5150 -1012 1618 188 35 0 chr12 1291537 1291824 -142990665 + AluJb SINE Alu 1 297 -15 687 303 90 23 chr12 1291824 1292400 -142990089 + L1ME LINE L1 5150 5787 -375 316 281 12 0 chr12 1293717 1293799 -142988690 + CT-rich Low_complexity Low_complexity 3 85 0 357 345 36 12 chr12 1294013 1294178 -142988311 - MIR SINE MIR -74 188 20 189 306 61 61 chr12 1295245 1295392 -142987097 - MIR SINE MIR -50 212 66 278 267 0 17 chr12 1295467 1295527 -142986962 + MIR SINE MIR 21 79 -129 1028 171 239 13 chr12 1295546 1295806 -142986683 - AluJo SINE Alu 0 302 1 1257 217 37 10 chr12 1295896 1296196 -142986293 + AluJo SINE Alu 1 308 -4 479 217 21 146 chr12 1296199 1296265 -142986224 + L1MC4 LINE L1 6737 6810 -1217 758 242 21 11 chr12 1296265 1296451 -142986038 - MER5A DNA MER1_type -1 188 1 479 217 21 146 chr12 1296451 1296624 -142985865 + L1MC4 LINE L1 6810 7012 -1015 289 196 161 42 chr12 1296687 1296830 -142985659 + L1MC5 LINE L1 7758 7917 -44 23 0 0 0 chr12 1297170 1297193 -142985296 + AT_rich Low_complexity Low_complexity 1 23 0 1955 97 48 14 chr12 1298295 1298584 -142983905 - AluSx SINE Alu 0 312 14 203 160 100 0 chr12 1299068 1299118 -142983371 + MIR SINE MIR 158 212 -50 1254 203 86 52 chr12 1299172 1299356 -142983133 - MER2 DNA MER2_type 0 345 144 2891 16 0 0 chr12 1299356 1299674 -142982815 + AluYb8 SINE Alu 1 318 0 1254 203 86 52 chr12 1299674 1299815 -142982674 - MER2 DNA MER2_type -201 144 9 691 221 91 5 chr12 1300075 1300274 -142982215 + MER20 DNA MER1_type 1 216 -3 1697 149 29 18 chr12 1300948 1301269 -142981220 - AluSx SINE Alu 0 324 1 345 226 65 19 chr12 1301764 1301919 -142980570 - L1ME3A LINE L1 -205 5965 5804 300 147 21 126 chr12 1302319 1302384 -142980105 - Charlie1 DNA MER1_type -7 2754 2700 838 124 0 29 chr12 1302384 1302521 -142979968 - FLAM_C SINE Alu 0 133 1 300 147 21 126 chr12 1302521 1302550 -142979939 - Charlie1 DNA MER1_type -61 2700 2670 552 263 66 14 chr12 1302554 1302767 -142979722 + L1MC4a LINE L1 5597 5820 -1988 2412 237 68 58 chr12 1302775 1303433 -142979056 + L1MC4a LINE L1 6906 7577 -231 787 227 152 19 chr12 1303433 1303697 -142978792 + AluJb SINE Alu 2 300 -2 2412 237 68 58 chr12 1303697 1303931 -142978558 + L1MC4a LINE L1 7577 7807 -1 2264 103 3 0 chr12 1304165 1304466 -142978023 + AluSp SINE Alu 1 302 -11 656 275 85 43 chr12 1304647 1304952 -142977537 - L2 LINE L2 -1 3312 2995 239 309 120 46 chr12 1304998 1305173 -142977316 - L2 LINE L2 -478 2836 2649 246 370 22 11 chr12 1305207 1305299 -142977190 - L2 LINE L2 -36 3236 3144 24 0 0 0 chr12 1305323 1305347 -142977142 + AT_rich Low_complexity Low_complexity 1 24 0 1555 155 11 33 chr12 1305347 1305618 -142976871 - AluJo SINE Alu -24 288 24 2399 133 6 3 chr12 1306134 1306488 -142976001 - MLT1A1 LTR MaLR -2 363 9 31 26 0 0 chr12 1306993 1307031 -142975458 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr12 1308424 1308457 -142974032 + AT_rich Low_complexity Low_complexity 1 33 0 1075 216 0 0 chr12 1308458 1308676 -142973813 - L1MA4 LINE L1 -14 6286 6069 2257 102 3 0 chr12 1309845 1310140 -142972349 + AluSp SINE Alu 1 296 -17 292 51 0 0 chr12 1310884 1310923 -142971566 + MADE1 DNA Mariner 42 80 0 695 107 52 68 chr12 1310940 1310954 -142971535 - L1MA9 LINE L1 0 6312 6299 1873 138 3 3 chr12 1310954 1311243 -142971246 - AluSx SINE Alu -3 309 21 695 107 52 68 chr12 1311243 1311396 -142971093 - L1MA9 LINE L1 -13 6299 6141 6606 74 28 0 chr12 1311396 1312072 -142970417 - L1PA7 LINE L1 0 6154 5463 2466 50 0 23 chr12 1312072 1312374 -142970115 - AluY SINE Alu -1 310 16 6606 74 28 0 chr12 1312374 1312660 -142969829 - L1PA7 LINE L1 -691 5463 5187 695 107 52 68 chr12 1312660 1312698 -142969791 - L1MA9 LINE L1 -171 6141 6104 1656 249 111 16 chr12 1313393 1313888 -142968601 + MLT1F LTR MaLR 1 542 0 1425 167 75 3 chr12 1314205 1314499 -142967990 - MER33 DNA MER1_type -8 316 2 1382 238 173 65 chr12 1315532 1315963 -142966526 - HAL1 LINE L1 0 2507 2124 2418 81 3 7 chr12 1315963 1316273 -142966216 - AluSg SINE Alu -1 309 1 1382 238 173 65 chr12 1316273 1316839 -142965650 - HAL1 LINE L1 -383 2124 1402 300 27 0 0 chr12 1318108 1318145 -142964344 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2356 102 0 6 chr12 1320126 1320440 -142962049 - AluSq SINE Alu -1 312 1 2625 24 0 7 chr12 1320831 1321129 -142961360 + AluY SINE Alu 1 296 -15 3277 178 64 13 chr12 1321867 1322614 -142959875 - L1MC2 LINE L1 -11 6333 5549 21 0 0 0 chr12 1322810 1322831 -142959658 + AT_rich Low_complexity Low_complexity 1 21 0 2525 87 0 0 chr12 1322843 1323155 -142959334 - AluSx SINE Alu 0 312 1 1676 181 0 14 chr12 1323926 1324218 -142958271 + AluJo SINE Alu 1 288 -24 335 331 24 116 chr12 1324796 1325047 -142957442 - L2 LINE L2 -16 3256 3029 1320 103 0 0 chr12 1325061 1325236 -142957253 + AluY SINE Alu 127 301 -10 582 297 117 51 chr12 1325519 1326118 -142956371 - L2 LINE L2 0 3313 2605 521 284 186 18 chr12 1326123 1326398 -142956091 + Charlie2 DNA MER1_type 6 326 -2536 2143 195 74 58 chr12 1326419 1326667 -142955822 + Charlie2 DNA MER1_type 1924 2166 -696 2015 120 7 7 chr12 1326667 1326958 -142955531 - AluSx SINE Alu -21 291 1 2143 195 74 58 chr12 1326958 1327561 -142954928 + Charlie2 DNA MER1_type 2166 2789 -73 452 345 43 5 chr12 1327734 1327943 -142954546 - L2 LINE L2 -739 2575 2359 699 204 98 0 chr12 1328017 1328149 -142954340 - FAM SINE Alu -27 158 14 331 339 35 29 chr12 1328149 1328320 -142954169 + L2 LINE L2 2237 2408 -906 463 293 144 13 chr12 1328479 1328708 -142953781 + MIR SINE MIR 4 262 0 2237 128 0 0 chr12 1329118 1329423 -142953066 + AluSg SINE Alu 1 305 -5 253 280 53 27 chr12 1329666 1329848 -142952641 + L1MC4 LINE L1 6544 6812 -1081 820 214 41 0 chr12 1329956 1330152 -142952337 + MER3 DNA MER1_type 1 204 -5 231 114 0 0 chr12 1330170 1330205 -142952284 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 430 342 98 52 chr12 1330677 1330915 -142951574 - L2 LINE L2 -1 3312 3087 2016 155 0 0 chr12 1330915 1331241 -142951248 - AluSg SINE Alu 0 310 1 430 342 98 52 chr12 1331241 1331449 -142951040 - L2 LINE L2 -226 3087 2845 474 318 115 75 chr12 1331468 1331656 -142950833 - L2 LINE L2 -432 2882 2703 1849 111 0 0 chr12 1331656 1331899 -142950590 + AluSx SINE Alu 1 243 -69 474 318 115 75 chr12 1331899 1332153 -142950336 - L2 LINE L2 -611 2703 2422 1023 112 25 6 chr12 1332154 1332315 -142950174 - MSTB1 LTR MaLR 0 432 269 552 293 39 85 chr12 1332578 1332675 -142949814 + L2 LINE L2 2998 3098 -215 2393 80 3 10 chr12 1332675 1332989 -142949500 - AluSx SINE Alu 0 312 1 552 293 39 85 chr12 1332989 1333222 -142949267 + L2 LINE L2 3098 3313 0 21 0 0 0 chr12 1336109 1336130 -142946359 + AT_rich Low_complexity Low_complexity 1 21 0 2313 92 0 22 chr12 1336130 1336444 -142946045 - AluSg SINE Alu -3 307 1 264 359 61 8 chr12 1336922 1337049 -142945440 + MIR SINE MIR 27 135 -73 259 243 14 27 chr12 1337149 1337223 -142945266 + (CA)n Simple_repeat Simple_repeat 1 73 0 739 260 61 22 chr12 1338644 1338897 -142943592 + MIR SINE MIR 2 262 0 5759 114 22 39 chr12 1340224 1340716 -142941773 - L1MA4 LINE L1 -5 6295 5796 396 0 0 0 chr12 1340716 1340760 -142941729 + (TG)n Simple_repeat Simple_repeat 2 45 0 5759 114 22 39 chr12 1340760 1341139 -142941350 - L1MA4 LINE L1 -504 5796 5440 1232 178 170 0 chr12 1341139 1341380 -142941109 - AluJo SINE Alu -30 282 1 5759 114 22 39 chr12 1341380 1341545 -142940944 - L1MA4 LINE L1 -860 5440 5274 572 309 80 60 chr12 1341816 1342485 -142940004 + L1M4 LINE L1 3175 3872 -2274 2111 124 0 0 chr12 1342485 1342767 -142939722 + AluSx SINE Alu 24 305 -7 572 309 80 60 chr12 1342767 1343102 -142939387 + L1M4 LINE L1 3872 4199 -1947 670 241 118 14 chr12 1343406 1343754 -142938735 + L1M4 LINE L1 4660 5043 -1103 1562 214 53 69 chr12 1343808 1344332 -142938157 + MLT2B1 LTR ERVL 1 516 -4 491 128 0 0 chr12 1344400 1344486 -142938003 + L1M4 LINE L1 4614 4699 -1447 997 99 0 0 chr12 1344734 1344865 -142937624 - AluSq/x SINE Alu -182 131 1 423 0 0 0 chr12 1345535 1345582 -142936907 + (CA)n Simple_repeat Simple_repeat 2 48 0 223 161 21 32 chr12 1345621 1345714 -142936775 + (TA)n Simple_repeat Simple_repeat 1 92 0 30 0 0 0 chr12 1348638 1348668 -142933821 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr12 1348849 1348877 -142933612 + AT_rich Low_complexity Low_complexity 1 28 0 2394 60 0 57 chr12 1349179 1349315 -142933174 + AluSq SINE Alu 1 143 -170 2385 88 3 0 chr12 1349315 1349611 -142932878 + AluSg SINE Alu 1 297 -13 2394 60 0 57 chr12 1349611 1349623 -142932866 + AluSq SINE Alu 143 154 -159 2301 71 4 0 chr12 1349623 1349930 -142932559 + AluY SINE Alu 1 308 0 2394 60 0 57 chr12 1349930 1350096 -142932393 + AluSq SINE Alu 154 299 -14 298 239 54 43 chr12 1351468 1351560 -142930929 + MIR SINE MIR 100 192 -70 309 245 57 9 chr12 1352362 1352468 -142930021 + L1M4b LINE L1 1381 1491 -5368 1087 210 0 15 chr12 1352589 1352784 -142929705 + AluJb SINE Alu 97 288 -24 1277 280 58 42 chr12 1352793 1352852 -142929637 + L1M4b LINE L1 1715 1772 -5366 2235 84 47 0 chr12 1352852 1353150 -142929339 - AluSp SINE Alu -1 312 1 1277 280 58 42 chr12 1353150 1353870 -142928619 + L1M4b LINE L1 1772 2551 -4587 1617 177 10 45 chr12 1353870 1354180 -142928309 + AluJb SINE Alu 1 299 -13 1277 280 58 42 chr12 1354180 1354380 -142928109 + L1M4b LINE L1 2551 2746 -4392 787 260 0 0 chr12 1354393 1354566 -142927923 + FRAM SINE Alu 1 170 -6 2721 234 100 43 chr12 1354598 1354710 -142927779 + L1M4b LINE L1 2736 2840 -4117 2245 112 0 3 chr12 1354710 1355023 -142927466 + AluSx SINE Alu 1 312 0 2721 234 100 43 chr12 1355023 1356425 -142926064 + L1M4b LINE L1 2840 4302 -2655 2019 142 19 6 chr12 1356424 1357800 -142924689 + L1PB3 LINE L1 4649 6151 -3 * 3165 110 21 14 chr12 1357801 1358284 -142924205 + L1PA13 LINE L1 5678 6163 0 1734 280 54 7 chr12 1358288 1359009 -142923480 + L1M4b LINE L1 4286 5040 -1917 2766 134 18 26 chr12 1359018 1359136 -142923353 - Tigger1 DNA MER2_type -1 2417 2300 1722 156 21 3 chr12 1359136 1359424 -142923065 + AluJo SINE Alu 1 293 -19 2766 134 18 26 chr12 1359424 1359805 -142922684 - Tigger1 DNA MER2_type -118 2300 1922 2336 84 0 10 chr12 1359805 1360114 -142922375 + AluY SINE Alu 1 306 -5 2362 83 10 0 chr12 1360124 1360424 -142922065 + AluSp SINE Alu 1 303 -10 2414 50 30 0 chr12 1361230 1361530 -142920959 - AluY SINE Alu -2 309 1 180 97 0 0 chr12 1363174 1363205 -142919284 + (T)n Simple_repeat Simple_repeat 1 31 0 246 62 0 0 chr12 1364652 1364684 -142917805 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1484 227 146 25 chr12 1364953 1365268 -142917221 - MER119 DNA MER1_type 0 583 308 2024 183 5 11 chr12 1365268 1365635 -142916854 + MLT1A1 LTR MaLR 1 365 0 1484 227 146 25 chr12 1365635 1365839 -142916650 - MER119 DNA MER1_type -275 308 1 22 0 0 0 chr12 1366165 1366187 -142916302 + AT_rich Low_complexity Low_complexity 1 22 0 680 252 33 33 chr12 1366219 1366373 -142916116 + MIR SINE MIR 15 172 -90 1538 85 0 0 chr12 1366373 1366606 -142915883 - AluY SINE Alu 0 324 92 680 252 33 33 chr12 1366606 1366660 -142915829 + MIR SINE MIR 171 224 -38 306 0 0 0 chr12 1366660 1366694 -142915795 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1665 108 77 19 chr12 1366701 1366961 -142915528 - AluSx SINE Alu -37 275 1 220 306 42 14 chr12 1367611 1367683 -142914806 + MIR SINE MIR 24 97 -165 1844 136 11 0 chr12 1368844 1369109 -142913380 - AluSx SINE Alu -44 268 1 323 282 77 77 chr12 1369505 1369884 -142912605 - MLT1J LTR MaLR -105 406 28 31 16 0 66 chr12 1370126 1370156 -142912333 + AT_rich Low_complexity Low_complexity 1 27 -30 2058 113 7 0 chr12 1370156 1370438 -142912051 + AluSx SINE Alu 3 286 -26 31 16 0 66 chr12 1370438 1370468 -142912021 + AT_rich Low_complexity Low_complexity 27 57 0 261 304 51 0 chr12 1370614 1370693 -142911796 + MIR SINE MIR 71 153 -109 262 292 0 17 chr12 1370695 1370815 -142911674 + L1ME LINE L1 5311 5428 -2380 261 291 137 11 chr12 1370838 1371013 -142911476 + L1ME LINE L1 5457 5653 -468 21 0 0 0 chr12 1371232 1371253 -142911236 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr12 1371491 1371517 -142910972 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1636 134 13 0 chr12 1371535 1371767 -142910722 - AluSx SINE Alu -77 235 1 1853 87 0 0 chr12 1371792 1372046 -142910443 - AluSx SINE Alu 0 309 56 240 100 0 0 chr12 1372162 1372202 -142910287 + (GA)n Simple_repeat Simple_repeat 2 41 0 2119 87 17 3 chr12 1372348 1372637 -142909852 - AluY SINE Alu -18 293 1 31 0 0 0 chr12 1372905 1372936 -142909553 + AT_rich Low_complexity Low_complexity 1 31 0 5404 33 5 17 chr12 1373037 1373328 -142909161 + L1PA7 LINE L1 5496 5789 -365 2450 90 0 3 chr12 1373328 1373639 -142908850 + AluSq SINE Alu 1 310 -3 5404 33 5 17 chr12 1373639 1374011 -142908478 + L1PA7 LINE L1 5789 6151 -3 491 318 49 28 chr12 1376374 1376847 -142905642 - L1MC4a LINE L1 -297 5824 5467 368 200 98 166 chr12 1376880 1377145 -142905344 - L1MC4a LINE L1 -1981 5827 5581 2538 65 0 0 chr12 1377145 1377451 -142905038 - AluY SINE Alu -5 306 1 297 324 37 22 chr12 1377643 1377779 -142904710 + MIR SINE MIR 102 239 -23 329 264 145 0 chr12 1378585 1378744 -142903745 + MIR SINE MIR 75 256 -6 273 333 17 11 chr12 1378770 1378887 -142903602 - MIR SINE MIR -79 129 7 414 314 117 89 chr12 1383957 1384575 -142897914 + L2 LINE L2 2033 2632 -682 200 31 62 0 chr12 1384575 1384607 -142897882 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1568 201 18 7 chr12 1384611 1384894 -142897595 - AluJb SINE Alu -26 286 1 414 314 117 89 chr12 1384894 1385089 -142897400 + L2 LINE L2 2634 2874 -440 2321 98 3 3 chr12 1385462 1385767 -142896722 + AluSx SINE Alu 1 305 -7 310 273 30 0 chr12 1385935 1386034 -142896455 - MIR SINE MIR -42 220 119 202 311 137 26 chr12 1386129 1386319 -142896170 - L2 LINE L2 -648 2666 2456 198 0 0 0 chr12 1386893 1386915 -142895574 + (TTA)n Simple_repeat Simple_repeat 2 23 0 243 295 0 0 chr12 1387035 1387096 -142895393 + CT-rich Low_complexity Low_complexity 3 63 0 360 258 70 51 chr12 1387149 1387405 -142895084 - L1MEd LINE L1 -4890 1229 969 1062 275 29 52 chr12 1387453 1387936 -142894553 - L1ME3A LINE L1 -5 6165 5694 351 273 106 42 chr12 1388466 1388921 -142893568 - HAL1 LINE L1 -1201 1306 823 17664 174 22 78 chr12 1389328 1389781 -142892708 - L1PA13 LINE L1 -4 6810 6334 2466 77 0 0 chr12 1389781 1390081 -142892408 - AluSc SINE Alu -9 300 1 17664 174 22 78 chr12 1390081 1392333 -142890156 - L1PA13 LINE L1 -480 6334 3959 288 0 0 0 chr12 1392333 1392365 -142890124 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 17664 174 22 78 chr12 1392365 1393254 -142889235 - L1PA13 LINE L1 -2855 3959 3022 1957 138 24 0 chr12 1393254 1393413 -142889076 - AluSx SINE Alu -16 296 125 195 42 0 0 chr12 1393413 1393437 -142889052 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1957 138 24 0 chr12 1393437 1393566 -142888923 - AluSx SINE Alu -187 125 1 17664 174 22 78 chr12 1393566 1397204 -142885285 - L1PA13 LINE L1 -3792 3022 8 740 173 0 16 chr12 1397223 1397350 -142885139 - FLAM_C SINE Alu -18 125 1 1839 86 0 16 chr12 1397532 1397777 -142884712 - AluSc SINE Alu 0 309 69 3903 54 6 8 chr12 1397777 1398276 -142884213 + L1PA6 LINE L1 5655 6152 -2 25 31 0 0 chr12 1398506 1398538 -142883951 + AT_rich Low_complexity Low_complexity 1 32 0 2509 73 0 13 chr12 1398633 1398948 -142883541 + AluSx SINE Alu 1 311 -1 185 364 18 0 chr12 1399306 1399361 -142883128 - L2 LINE L2 -580 2734 2679 2352 72 7 0 chr12 1400300 1400591 -142881898 - AluY SINE Alu -18 293 1 430 319 33 42 chr12 1401134 1401347 -142881142 - MIR SINE MIR -6 256 46 288 309 0 8 chr12 1401413 1401539 -142880950 - HAL1b LINE L1 -31 1317 1193 261 222 209 0 chr12 1401542 1401631 -142880858 - HAL1b LINE L1 -203 1145 1076 2446 63 0 10 chr12 1401631 1401933 -142880556 - AluY SINE Alu -12 299 1 261 222 209 0 chr12 1401933 1401996 -142880493 - HAL1b LINE L1 -272 1076 961 344 299 123 21 chr12 1402120 1402404 -142880085 - HAL1b LINE L1 -542 806 494 198 0 0 0 chr12 1402610 1402632 -142879857 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2751 10 0 0 chr12 1403111 1403412 -142879077 + AluYb8 SINE Alu 1 301 -17 228 91 0 0 chr12 1403707 1403740 -142878749 + U2 snRNA snRNA 1 33 -155 992 121 23 0 chr12 1403792 1403966 -142878523 - L1MA8 LINE L1 -2 6289 6112 2154 112 3 0 chr12 1404152 1404446 -142878043 + AluSx SINE Alu 1 295 -17 2144 96 3 23 chr12 1404855 1405157 -142877332 + AluSq SINE Alu 1 296 -17 2209 87 13 13 chr12 1405832 1406131 -142876358 + AluSg SINE Alu 1 299 -11 2809 137 11 9 chr12 1407145 1407599 -142874890 - MSTB2 LTR MaLR 0 457 3 1812 148 38 1 chr12 1407753 1408117 -142874372 - L1M3 LINE L1 -501 5667 5290 443 113 0 0 chr12 1408134 1408205 -142874284 - L1MA5A LINE L1 -5 6292 6222 554 221 0 7 chr12 1408211 1408356 -142874133 - L1M3 LINE L1 -819 5327 5184 193 200 0 25 chr12 1408709 1408749 -142873740 + L2 LINE L2 3225 3263 -9 2633 58 0 0 chr12 1409469 1409780 -142872709 - AluY SINE Alu 0 311 1 337 270 80 135 chr12 1409802 1410165 -142872324 + L3 LINE CR1 1232 1574 -3 539 326 150 11 chr12 1410183 1410649 -142871840 + L2 LINE L2 1779 2309 -1005 210 265 10 78 chr12 1410655 1410692 -142871797 + MIR SINE MIR 164 202 -60 2063 133 3 0 chr12 1410692 1410986 -142871503 + AluSq SINE Alu 1 295 -18 210 265 10 78 chr12 1410986 1411050 -142871439 + MIR SINE MIR 202 258 -4 1564 141 36 0 chr12 1411122 1411370 -142871119 - AluSx SINE Alu -33 279 23 250 226 129 77 chr12 1411482 1411522 -142870967 - MER103 DNA DNA -1 165 129 1071 155 89 118 chr12 1411522 1411870 -142870619 - MER58B DNA MER1_type -3 338 1 250 226 129 77 chr12 1411870 1411984 -142870505 - MER103 DNA DNA -37 129 3 1847 155 24 3 chr12 1412374 1412664 -142869825 + AluJb SINE Alu 1 296 -16 306 0 0 0 chr12 1412664 1412698 -142869791 + (TG)n Simple_repeat Simple_repeat 2 35 0 759 205 86 0 chr12 1414530 1414681 -142867808 + FAM SINE Alu 11 174 -11 194 229 42 0 chr12 1415021 1415069 -142867420 - MER5A DNA MER1_type -88 101 52 1380 239 75 19 chr12 1415815 1416188 -142866301 - MSTD LTR MaLR -1 395 2 281 289 10 10 chr12 1416820 1416917 -142865572 - MARNA DNA Mariner -94 492 396 1537 167 19 69 chr12 1417251 1417568 -142864921 + AluJb SINE Alu 1 301 -11 1643 38 0 14 chr12 1417666 1417875 -142864614 + L1PA4 LINE L1 5950 6155 0 21 0 0 0 chr12 1417875 1417896 -142864593 + AT_rich Low_complexity Low_complexity 1 21 0 396 55 0 0 chr12 1418880 1418935 -142863554 + (TC)n Simple_repeat Simple_repeat 1 55 0 1492 188 28 9 chr12 1419030 1419350 -142863139 + L1MB3 LINE L1 5857 6182 -1 312 276 36 63 chr12 1419500 1419658 -142862831 - L1ME1 LINE L1 -127 6039 5893 2010 144 0 10 chr12 1419994 1420306 -142862183 - AluJb SINE Alu -3 309 1 270 333 171 17 chr12 1421217 1421451 -142861038 - L3 LINE CR1 -11 1566 1297 441 310 0 0 chr12 1421897 1422010 -142860479 - L2 LINE L2 -9 3304 3192 2253 142 78 2 chr12 1422236 1422674 -142859815 + L1MB2 LINE L1 5701 6171 0 210 71 0 0 chr12 1424396 1424424 -142858065 + (T)n Simple_repeat Simple_repeat 1 28 0 270 154 115 0 chr12 1424758 1424836 -142857653 + L1ME4a LINE L1 6031 6117 -4 1783 131 55 24 chr12 1427172 1427463 -142855026 - AluJb SINE Alu -12 300 1 1693 158 20 0 chr12 1427483 1427781 -142854708 - L1MB1 LINE L1 -1 6167 5864 487 273 31 37 chr12 1427818 1427979 -142854510 + MIR SINE MIR 32 191 -71 206 274 41 41 chr12 1427998 1428071 -142854418 + MIR SINE MIR 119 191 -71 214 264 42 42 chr12 1428090 1428162 -142854327 + MIR SINE MIR 119 190 -72 189 292 42 42 chr12 1428182 1428254 -142854235 + MIR SINE MIR 119 190 -72 549 164 9 0 chr12 1428944 1429054 -142853435 + L1MB3 LINE L1 6072 6182 -1 2263 120 0 0 chr12 1429950 1430259 -142852230 + AluSc SINE Alu 1 309 0 216 67 0 0 chr12 1431275 1431305 -142851184 + (T)n Simple_repeat Simple_repeat 1 30 0 1576 153 64 53 chr12 1431553 1431913 -142850576 - THE1B LTR MaLR 0 364 1 270 289 141 21 chr12 1431928 1432070 -142850419 + MIR SINE MIR 57 215 -47 2238 99 0 3 chr12 1432184 1432486 -142850003 - AluSg1 SINE Alu -8 301 1 624 249 83 5 chr12 1435621 1435826 -142846663 - MLT1F-int LTR MaLR -855 516 296 300 265 18 71 chr12 1435842 1436012 -142846477 - MLT1F-int LTR MaLR -1210 161 1 576 203 49 14 chr12 1436012 1436155 -142846334 - MLT1F LTR MaLR -2 540 393 716 248 31 53 chr12 1436160 1436386 -142846103 - MLT1F LTR MaLR -321 221 1 618 221 38 0 chr12 1436387 1436545 -142845944 + L1ME2 LINE L1 5756 5919 -245 577 174 0 97 chr12 1437791 1437946 -142844543 - FLAM_C SINE Alu 0 143 4 316 337 34 0 chr12 1438536 1438625 -142843864 + MIR3 SINE MIR 6 97 -111 311 296 76 12 chr12 1438771 1438943 -142843546 - Charlie8 DNA MER1_type -2157 260 78 250 290 29 0 chr12 1439027 1439096 -142843393 + MIR3 SINE MIR 103 173 -35 22 0 0 0 chr12 1439266 1439288 -142843201 + AT_rich Low_complexity Low_complexity 1 22 0 1135 145 0 0 chr12 1439933 1440099 -142842390 + AluSg/x SINE Alu 130 295 -15 715 264 94 24 chr12 1440291 1440503 -142841986 - MIR SINE MIR -35 227 1 2519 26 0 10 chr12 1441733 1442035 -142840454 - AluY SINE Alu -12 299 1 2348 105 3 0 chr12 1442482 1442787 -142839702 - AluSg SINE Alu -4 306 1 2230 113 0 13 chr12 1442816 1443116 -142839373 + AluSx SINE Alu 1 296 -16 416 255 61 66 chr12 1443121 1443317 -142839172 - L1ME3A LINE L1 -36 6134 5940 1543 200 58 81 chr12 1443370 1443815 -142838674 + MLT1D-int LTR MaLR 937 1371 0 1105 235 154 28 chr12 1443861 1444295 -142838194 + MLT1D LTR MaLR 17 505 0 2279 59 55 3 chr12 1444530 1444819 -142837670 + AluY SINE Alu 1 304 -7 299 329 13 87 chr12 1444953 1445263 -142837226 - L2 LINE L2 -464 2850 2564 309 232 58 29 chr12 1445274 1445416 -142837073 - MLT1J2 LTR MaLR -18 423 295 403 345 76 29 chr12 1445561 1445836 -142836653 - L2 LINE L2 -862 2452 2165 22 0 0 0 chr12 1446570 1446592 -142835897 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 1446785 1446808 -142835681 + AT_rich Low_complexity Low_complexity 1 23 0 29 90 0 0 chr12 1446834 1446912 -142835577 + AT_rich Low_complexity Low_complexity 1 78 0 1696 226 103 17 chr12 1447521 1448418 -142834071 - L1MDa LINE L1 -5415 1125 119 1145 194 118 0 chr12 1448466 1448781 -142833708 - MER31A LTR ERV1 -6 479 128 1782 145 7 24 chr12 1449696 1449985 -142832504 + AluJb SINE Alu 1 284 -28 378 0 0 0 chr12 1450058 1450100 -142832389 + (TG)n Simple_repeat Simple_repeat 2 43 0 2307 67 40 3 chr12 1450197 1450495 -142831994 + AluY SINE Alu 2 310 -1 2497 63 3 0 chr12 1450569 1450872 -142831617 + AluY SINE Alu 1 304 -7 1801 146 140 29 chr12 1450932 1451317 -142831172 + MSTA LTR MaLR 1 428 0 294 355 59 13 chr12 1452850 1453002 -142829487 - L2 LINE L2 0 3272 3114 372 331 47 39 chr12 1453109 1453493 -142828996 + L1MEd LINE L1 144 530 -5589 1996 267 67 23 chr12 1453580 1454422 -142828067 + L1MC4a LINE L1 5462 6340 -1468 1932 130 18 0 chr12 1454450 1454734 -142827755 - AluJb SINE Alu -23 289 1 366 312 76 73 chr12 1454779 1455080 -142827409 + L1MC4a LINE L1 6401 6702 -1106 699 180 65 40 chr12 1455083 1455283 -142827206 - MLT1A1 LTR MaLR -3 362 158 1876 160 3 22 chr12 1455384 1455702 -142826787 - AluJo SINE Alu 0 312 1 2962 183 29 87 chr12 1455772 1457363 -142825126 - L1MB7 LINE L1 -15 6169 4672 2581 55 3 0 chr12 1457374 1457684 -142824805 - AluY SINE Alu 0 311 1 198 191 0 0 chr12 1457742 1457789 -142824700 + (TAG)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr12 1457925 1457954 -142824535 + AT_rich Low_complexity Low_complexity 1 29 0 724 286 113 0 chr12 1457954 1458167 -142824322 + MIR SINE MIR 20 256 -6 473 211 119 32 chr12 1458273 1458458 -142824031 + L1MEd LINE L1 943 1143 -4976 425 225 116 25 chr12 1458573 1458699 -142823790 + L1MEd LINE L1 2893 3006 -3123 2224 105 26 0 chr12 1458699 1459003 -142823486 + AluSx SINE Alu 1 312 0 425 225 116 25 chr12 1459003 1459065 -142823424 + L1MEd LINE L1 3006 3061 -3068 279 0 0 0 chr12 1459065 1459096 -142823393 + (CA)n Simple_repeat Simple_repeat 2 32 0 425 225 116 25 chr12 1459096 1459190 -142823299 + L1MEd LINE L1 3061 3202 -2927 192 234 0 0 chr12 1459636 1459683 -142822806 + CT-rich Low_complexity Low_complexity 2 48 0 991 247 9 0 chr12 1460497 1460716 -142821773 - MLT1A1 LTR MaLR 0 365 145 375 181 0 0 chr12 1460733 1460805 -142821684 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 407 143 0 0 chr12 1461100 1461170 -142821319 - L1PA16 LINE L1 -2 6164 6095 678 162 11 123 chr12 1461174 1461307 -142821182 - MLT1A1 LTR MaLR -206 159 47 1967 132 3 7 chr12 1461307 1461640 -142820849 + AluSx SINE Alu 1 332 0 678 162 11 123 chr12 1461640 1461683 -142820806 - MLT1A1 LTR MaLR -318 47 1 2171 108 3 0 chr12 1461872 1462160 -142820329 + AluSx SINE Alu 1 289 -23 790 149 0 45 chr12 1462219 1462353 -142820136 + FLAM_C SINE Alu 1 128 -5 249 211 0 0 chr12 1462378 1462435 -142820054 + (TA)n Simple_repeat Simple_repeat 2 58 0 866 282 16 37 chr12 1462496 1462741 -142819748 - MIR SINE MIR -1 261 22 1288 167 13 34 chr12 1463108 1463342 -142819147 + AluJo SINE Alu 71 299 -13 736 144 0 0 chr12 1463861 1463972 -142818517 + FLAM_A SINE Alu 6 116 -26 27 0 0 0 chr12 1463972 1463999 -142818490 + AT_rich Low_complexity Low_complexity 1 27 0 1068 249 69 39 chr12 1464071 1464433 -142818056 - MLT1A2 LTR MaLR -1 373 1 1387 135 120 68 chr12 1466016 1466155 -142816334 + MER2 DNA MER2_type 1 131 -213 2055 131 0 0 chr12 1466155 1466459 -142816030 - AluSx SINE Alu 0 304 1 1387 135 120 68 chr12 1466459 1466585 -142815904 + MER2 DNA MER2_type 131 289 -55 216 97 0 0 chr12 1466585 1466616 -142815873 + (TA)n Simple_repeat Simple_repeat 1 31 0 1387 135 120 68 chr12 1466616 1466673 -142815816 + MER2 DNA MER2_type 289 342 -2 465 326 21 0 chr12 1468896 1469037 -142813452 + MIR SINE MIR 4 147 -115 778 297 33 0 chr12 1469055 1469267 -142813222 + MIR SINE MIR 13 231 -31 220 234 0 0 chr12 1469301 1469348 -142813141 + MIR SINE MIR 210 256 -6 213 219 110 68 chr12 1469366 1469439 -142813050 - MIR3 SINE MIR -45 163 88 1994 144 6 10 chr12 1469762 1470074 -142812415 + AluSx SINE Alu 1 311 -1 1602 191 21 50 chr12 1470266 1470321 -142812168 - MLT1A1 LTR MaLR 0 365 310 2159 132 12 21 chr12 1470321 1470661 -142811828 - MER1B DNA MER1_type 0 337 1 1602 191 21 50 chr12 1470661 1470981 -142811508 - MLT1A1 LTR MaLR -55 310 1 238 211 18 18 chr12 1471124 1471181 -142811308 + CT-rich Low_complexity Low_complexity 1 57 0 430 252 45 18 chr12 1471181 1471292 -142811197 + L2 LINE L2 3183 3296 -17 210 37 0 0 chr12 1471295 1471322 -142811167 + (TG)n Simple_repeat Simple_repeat 2 28 0 345 221 90 26 chr12 1472338 1472506 -142809983 - MIR SINE MIR -6 256 4 623 187 37 86 chr12 1473143 1473330 -142809159 + MIR SINE MIR 83 260 -2 2261 116 0 3 chr12 1473948 1474249 -142808240 + AluSx SINE Alu 1 300 -12 629 296 13 52 chr12 1474314 1474547 -142807942 - MIR SINE MIR -2 260 37 1072 209 105 83 chr12 1474653 1475016 -142807473 + MER39 LTR ERV1 1 354 -211 1198 44 19 0 chr12 1475016 1475176 -142807313 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 1786 147 0 11 chr12 1475179 1475464 -142807025 - AluJo SINE Alu -30 282 1 1072 209 105 83 chr12 1475464 1475607 -142806882 + MER39 LTR ERV1 355 563 -2 1135 130 6 0 chr12 1476101 1476270 -142806219 + L1MB2 LINE L1 5995 6164 -7 2235 109 0 0 chr12 1476886 1477205 -142805284 - AluY SINE Alu 0 311 1 1473 138 40 4 chr12 1477432 1477685 -142804804 - L1MA5 LINE L1 -2 6298 6037 1523 189 65 92 chr12 1477688 1478132 -142804357 - LTR8A LTR ERV1 -6 721 290 1987 100 0 37 chr12 1478186 1478456 -142804033 + AluSc SINE Alu 1 260 -49 1046 164 72 125 chr12 1478466 1478770 -142803719 - LTR8A LTR ERV1 -439 288 1 3627 149 26 26 chr12 1478770 1479432 -142803057 - L1MA5 LINE L1 -265 6035 5374 1472 199 16 26 chr12 1479454 1479858 -142802631 + MER93b LTR ERV1 17 373 0 1315 288 19 17 chr12 1479862 1480328 -142802161 - L1M4 LINE L1 -3335 2811 2345 222 118 0 0 chr12 1480472 1480506 -142801983 + (TG)n Simple_repeat Simple_repeat 2 35 0 998 8 8 0 chr12 1481244 1481363 -142801126 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 266 222 0 32 chr12 1482333 1482396 -142800093 + MIR SINE MIR 104 164 -98 2219 106 3 7 chr12 1482553 1482855 -142799634 - AluSq SINE Alu -12 301 1 454 287 25 18 chr12 1484119 1484289 -142798200 + MIR SINE MIR 81 250 -12 232 278 153 0 chr12 1485987 1486059 -142796430 - L2 LINE L2 -4 3268 3186 255 284 0 0 chr12 1486159 1486226 -142796263 - L2 LINE L2 -225 3047 2981 1404 220 54 25 chr12 1486326 1486826 -142795663 - MLT1F LTR MaLR 0 542 26 2261 97 0 10 chr12 1486832 1487130 -142795359 - AluSx SINE Alu -17 295 1 247 331 33 33 chr12 1487616 1487737 -142794752 + MIR3 SINE MIR 75 195 -13 1243 171 96 20 chr12 1488351 1488602 -142793887 - AluJo SINE Alu -15 297 28 632 241 59 3 chr12 1488611 1488819 -142793670 - MER58B DNA MER1_type -46 295 14 182 200 308 0 chr12 1488967 1489032 -142793457 - MIR SINE MIR -55 207 123 358 289 10 0 chr12 1489128 1489232 -142793257 - MIR SINE MIR -157 105 1 727 70 0 50 chr12 1490351 1490451 -142792038 + AluJb SINE Alu 210 304 -8 240 111 0 0 chr12 1492606 1492642 -142789847 + (CA)n Simple_repeat Simple_repeat 2 37 0 180 0 0 0 chr12 1494205 1494225 -142788264 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1844 159 3 14 chr12 1495110 1495406 -142787083 + AluJb SINE Alu 1 293 -19 22 0 0 0 chr12 1495406 1495428 -142787061 + AT_rich Low_complexity Low_complexity 1 22 0 598 110 90 0 chr12 1496483 1496583 -142785906 - L1MA4 LINE L1 -29 6271 6163 2603 48 0 6 chr12 1496644 1496956 -142785533 - AluY SINE Alu -1 310 1 656 107 0 39 chr12 1496956 1497049 -142785440 - FLAM_A SINE Alu -178 133 43 612 0 0 0 chr12 1497051 1497119 -142785370 + (TG)n Simple_repeat Simple_repeat 1 68 0 1883 141 11 4 chr12 1497119 1497396 -142785093 - AluSx SINE Alu -33 279 1 2186 111 3 7 chr12 1497514 1497811 -142784678 - AluSx SINE Alu -16 296 1 2172 118 0 0 chr12 1498374 1498678 -142783811 - AluSx SINE Alu -8 304 1 253 281 124 47 chr12 1499168 1499351 -142783138 + L1ME4a LINE L1 5800 6016 -105 2301 81 34 0 chr12 1499351 1499649 -142782840 - AluY SINE Alu -3 308 1 253 281 124 47 chr12 1499649 1499764 -142782725 + L1ME4a LINE L1 6016 6121 0 225 0 0 0 chr12 1500977 1501002 -142781487 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1279 134 125 69 chr12 1501462 1501673 -142780816 - L1MA8 LINE L1 0 6291 6054 2284 107 0 3 chr12 1501673 1501981 -142780508 - AluSx SINE Alu -5 307 1 1279 134 125 69 chr12 1501981 1502089 -142780400 - L1MA8 LINE L1 -237 6054 5954 616 220 8 0 chr12 1502298 1502430 -142780059 - MLT1A1 LTR MaLR 0 365 233 618 139 9 26 chr12 1502453 1502568 -142779921 - MLT1A1 LTR MaLR -252 113 1 1138 136 0 23 chr12 1503317 1503493 -142778996 + FRAM SINE Alu 1 166 -10 1737 173 6 31 chr12 1503688 1504006 -142778483 + AluJb SINE Alu 3 312 0 2023 142 3 3 chr12 1504089 1504400 -142778089 - AluSx SINE Alu -1 311 1 4221 102 38 8 chr12 1505184 1505793 -142776696 + THE1C-int LTR MaLR 954 1580 0 2240 104 122 3 chr12 1505793 1506128 -142776361 + THE1C LTR MaLR 1 375 0 1296 242 116 17 chr12 1506129 1506604 -142775885 - L1MCc LINE L1 -4025 3097 2576 * 4067 173 61 41 chr12 1506600 1507637 -142774852 - L1MB3 LINE L1 0 6183 5128 379 250 62 76 chr12 1507637 1507781 -142774708 - L1MCc LINE L1 -4532 2590 2449 1654 160 6 66 chr12 1507781 1508113 -142774376 + AluJo SINE Alu 1 312 0 379 250 62 76 chr12 1508113 1508192 -142774297 - L1MCc LINE L1 -4673 2449 2370 2186 158 18 23 chr12 1508204 1508589 -142773900 + MLT1B LTR MaLR 2 384 -6 1373 261 38 60 chr12 1508594 1509609 -142772880 - L1MCc LINE L1 -4760 2362 877 3441 209 48 22 chr12 1510302 1511033 -142771456 + MER21B LTR ERV1 1 750 -113 1011 223 67 10 chr12 1511538 1511838 -142770651 - L1MA4 LINE L1 -3 6297 5981 2053 155 33 0 chr12 1513407 1513742 -142768747 + MER7A DNA MER2_type 3 346 0 1178 159 0 0 chr12 1514189 1514371 -142768118 + AluJb SINE Alu 129 310 -2 1725 235 94 61 chr12 1514727 1514981 -142767508 + L1MC4 LINE L1 6450 6694 -1348 2106 85 4 15 chr12 1514981 1515252 -142767237 - AluSp SINE Alu -9 304 37 1725 235 94 61 chr12 1515252 1515558 -142766931 + L1MC4 LINE L1 6694 7029 -1013 1498 210 85 33 chr12 1515863 1515915 -142766574 + L1MC4 LINE L1 7025 7073 -969 258 105 0 0 chr12 1515915 1515953 -142766536 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1498 210 85 33 chr12 1515953 1516358 -142766131 + L1MC4 LINE L1 7073 7506 -536 258 222 48 0 chr12 1516453 1516516 -142765973 + L1MC4 LINE L1 7921 7986 -56 * 568 226 195 0 chr12 1516502 1516666 -142765823 - L1MC4 LINE L1 -969 7073 6878 24 32 0 0 chr12 1516671 1516702 -142765787 + AT_rich Low_complexity Low_complexity 1 31 0 293 282 204 33 chr12 1516987 1517168 -142765321 + L3 LINE CR1 1334 1545 -32 207 0 0 0 chr12 1517409 1517432 -142765057 + (T)n Simple_repeat Simple_repeat 1 23 0 387 322 51 6 chr12 1517435 1517612 -142764877 + L3b LINE CR1 1296 1480 -103 2235 119 3 0 chr12 1517836 1518146 -142764343 + AluSq SINE Alu 1 311 -2 304 220 154 55 chr12 1518270 1518452 -142764037 + L1ME2 LINE L1 5100 5299 -847 3235 208 94 17 chr12 1518489 1519265 -142763224 + L1ME2 LINE L1 5304 6139 -25 315 0 0 0 chr12 1520148 1520183 -142762306 + (TG)n Simple_repeat Simple_repeat 2 36 0 2305 97 0 10 chr12 1520962 1521270 -142761219 - AluSc SINE Alu -4 305 1 33 25 0 0 chr12 1521353 1521393 -142761096 + AT_rich Low_complexity Low_complexity 1 40 0 2077 165 0 53 chr12 1522528 1522940 -142759549 - MLT1B LTR MaLR 0 390 1 3482 142 2 19 chr12 1523990 1524526 -142757963 - MER1A DNA MER1_type 0 527 1 2176 124 10 0 chr12 1524771 1525070 -142757419 + AluSx SINE Alu 1 302 -10 206 170 0 21 chr12 1525081 1525128 -142757361 + GA-rich Low_complexity Low_complexity 1 46 0 387 242 183 0 chr12 1525200 1525320 -142757169 - MIR3 SINE MIR -12 196 55 798 180 0 0 chr12 1527594 1527716 -142754773 + FLAM_A SINE Alu 1 122 -11 285 291 104 30 chr12 1528384 1528518 -142753971 + MIR3 SINE MIR 64 207 -1 1882 183 0 3 chr12 1528817 1529128 -142753361 + AluJb SINE Alu 1 310 -2 284 155 0 17 chr12 1529128 1529186 -142753303 + GA-rich Low_complexity Low_complexity 1 57 0 242 239 0 0 chr12 1529218 1529264 -142753225 - L2 LINE L2 -3 3310 3265 2410 94 0 10 chr12 1529470 1529777 -142752712 - AluSg SINE Alu -6 304 1 1205 132 0 0 chr12 1529933 1530100 -142752389 + FRAM SINE Alu 1 166 -10 199 328 120 8 chr12 1531748 1531873 -142750616 - L2 LINE L2 0 3272 3134 189 342 58 49 chr12 1532023 1532266 -142750223 - L2 LINE L2 -444 2870 2626 1880 167 0 16 chr12 1532299 1532432 -142750057 + AluJo SINE Alu 1 135 -177 2143 97 31 7 chr12 1532432 1532721 -142749768 + AluY SINE Alu 1 296 -15 1880 167 0 16 chr12 1532721 1532898 -142749591 + AluJo SINE Alu 135 306 -6 21 0 0 0 chr12 1532960 1532981 -142749508 + AT_rich Low_complexity Low_complexity 1 21 0 646 276 131 8 chr12 1533099 1533465 -142749024 + L1ME4a LINE L1 5507 5917 -204 185 356 26 26 chr12 1533479 1533594 -142748895 - L2 LINE L2 -995 2319 2205 365 169 24 48 chr12 1533705 1533788 -142748701 + MIR SINE MIR 181 261 -1 1444 252 122 33 chr12 1534082 1534962 -142747527 - L1ME3A LINE L1 -14 6156 5355 2494 49 14 0 chr12 1534962 1535250 -142747239 + AluY SINE Alu 1 292 -19 1444 252 122 33 chr12 1535250 1535912 -142746577 - L1ME3A LINE L1 -815 5355 4458 234 315 151 20 chr12 1535912 1536058 -142746431 - L2 LINE L2 -1400 1914 1750 24 0 0 0 chr12 1536543 1536567 -142745922 + AT_rich Low_complexity Low_complexity 1 24 0 1101 181 117 37 chr12 1537377 1537676 -142744813 - MER44D DNA MER2_type -8 601 9 305 339 39 47 chr12 1538292 1538525 -142743964 - L3 LINE CR1 -291 1286 1056 2316 99 6 6 chr12 1538884 1539197 -142743292 - AluSq SINE Alu 0 313 1 1489 188 18 70 chr12 1539199 1539465 -142743024 - L1MB8 LINE L1 0 6178 5943 2193 132 0 3 chr12 1539465 1539769 -142742720 + AluJb SINE Alu 1 303 -9 1489 188 18 70 chr12 1539769 1539943 -142742546 - L1MB8 LINE L1 -235 5943 5761 2146 120 0 13 chr12 1540128 1540444 -142742045 - AluSx SINE Alu 0 312 1 2545 54 3 0 chr12 1540474 1540768 -142741721 + AluY SINE Alu 1 295 -16 374 345 58 29 chr12 1540768 1540939 -142741550 - L1MB8 LINE L1 -2081 5727 5552 2302 79 7 23 chr12 1541022 1541327 -142741162 - AluSg SINE Alu -4 306 7 1806 173 0 26 chr12 1541333 1541639 -142740850 - AluJo SINE Alu -14 298 1 2438 105 0 0 chr12 1541648 1541953 -142740536 - AluSg SINE Alu -5 305 1 281 254 18 0 chr12 1541960 1542070 -142740419 - L1MB8 LINE L1 -2400 5408 5297 355 274 53 16 chr12 1542518 1542708 -142739781 - L1MB8 LINE L1 -1365 4781 4585 310 213 106 43 chr12 1542707 1542848 -142739641 + L1ME4a LINE L1 5939 6088 -33 * 2130 106 0 3 chr12 1542862 1543175 -142739314 - AluSx SINE Alu 0 312 1 252 0 0 0 chr12 1543823 1543851 -142738638 + (T)n Simple_repeat Simple_repeat 1 28 0 1629 171 7 50 chr12 1543873 1544171 -142738318 + AluJb SINE Alu 1 285 -27 261 256 0 31 chr12 1544176 1544305 -142738184 + GA-rich Low_complexity Low_complexity 4 128 0 2512 72 0 3 chr12 1544307 1544613 -142737876 + AluY SINE Alu 1 305 -6 731 165 0 9 chr12 1544616 1544731 -142737758 - FLAM_A SINE Alu -19 114 1 572 178 62 75 chr12 1544864 1545010 -142737479 + AluJb SINE Alu 5 148 -164 535 218 137 8 chr12 1545010 1545134 -142737355 - MIR SINE MIR -108 154 15 216 114 29 0 chr12 1545937 1545972 -142736517 + MIR SINE MIR 222 257 -5 229 303 50 42 chr12 1546258 1546377 -142736112 + MIR3 SINE MIR 9 128 -80 309 82 20 0 chr12 1547494 1547543 -142734946 + FLAM SINE Alu 84 133 0 218 227 0 0 chr12 1547846 1547890 -142734599 - L2 LINE L2 -5 3308 3265 2065 101 38 3 chr12 1549711 1549999 -142732490 + AluSx SINE Alu 1 298 -14 270 0 0 0 chr12 1549999 1550029 -142732460 + (TA)n Simple_repeat Simple_repeat 2 31 0 1750 157 3 20 chr12 1553631 1553930 -142728559 + AluJo SINE Alu 1 294 -18 346 270 86 90 chr12 1554112 1554345 -142728144 + L1MC5 LINE L1 7695 7926 -35 576 289 82 14 chr12 1554502 1554710 -142727779 - MIR SINE MIR -28 234 13 1705 157 11 0 chr12 1555260 1555527 -142726962 - AluJo SINE Alu -30 282 13 183 303 83 46 chr12 1555667 1555776 -142726713 - MIR3 SINE MIR -95 113 1 2331 105 0 9 chr12 1557710 1558025 -142724464 - AluSx SINE Alu 0 312 1 242 212 61 61 chr12 1558311 1558410 -142724079 + L2 LINE L2 3138 3236 -36 216 0 0 0 chr12 1559085 1559109 -142723380 + (TG)n Simple_repeat Simple_repeat 2 25 0 1461 101 0 55 chr12 1560368 1560586 -142721903 - AluSp SINE Alu 0 313 108 304 351 18 0 chr12 1562024 1562135 -142720354 + L2 LINE L2 3200 3312 -1 288 289 47 8 chr12 1562136 1562264 -142720225 - MIR3 SINE MIR -75 133 1 2296 195 29 67 chr12 1562320 1562360 -142720129 + L1MB3 LINE L1 5573 5613 -570 2201 110 3 10 chr12 1562360 1562661 -142719828 + AluSp SINE Alu 3 301 -12 2296 195 29 67 chr12 1562661 1563252 -142719237 + L1MB3 LINE L1 5613 6180 -3 555 190 33 109 chr12 1563281 1563492 -142718997 + L1MB4 LINE L1 5986 6180 0 1935 133 61 0 chr12 1563504 1563783 -142718706 + AluSx SINE Alu 1 296 -16 200 176 14 108 chr12 1564268 1564295 -142718194 - L3 LINE CR1 -142 1435 1407 1908 150 38 10 chr12 1564295 1564588 -142717901 - AluJb SINE Alu -11 301 1 200 176 14 108 chr12 1564588 1564634 -142717855 - L3 LINE CR1 -170 1407 1369 * 347 364 50 0 chr12 1564631 1564771 -142717718 - MIR3 SINE MIR -3 205 59 273 401 46 7 chr12 1564930 1565082 -142717407 - L3 LINE CR1 -1186 391 234 2601 43 0 3 chr12 1565106 1565408 -142717081 + AluY SINE Alu 1 301 -10 263 130 0 74 chr12 1565435 1565489 -142717000 - MER58B DNA MER1_type 0 341 292 479 234 161 2 chr12 1565490 1565645 -142716844 + MER45A DNA AcHobo 1 178 0 754 222 159 0 chr12 1565645 1565902 -142716587 - MER58B DNA MER1_type -43 298 1 237 255 0 0 chr12 1567261 1567308 -142715181 - L2 LINE L2 -4 3309 3263 4884 143 29 2 chr12 1567335 1568211 -142714278 - L1MA7 LINE L1 -2 6289 5391 2033 117 0 7 chr12 1568211 1568492 -142713997 + AluSx SINE Alu 34 312 0 2763 180 16 11 chr12 1568496 1569453 -142713036 + L1M2 LINE L1 2472 3432 -3416 1181 102 0 0 chr12 1569461 1569618 -142712871 + AluSp/q SINE Alu 155 311 -2 5673 126 22 4 chr12 1569620 1570367 -142712122 + L1MA4A LINE L1 5315 6084 -219 2488 67 0 16 chr12 1570367 1570680 -142711809 + AluY SINE Alu 1 308 -3 5673 126 22 4 chr12 1570680 1570904 -142711585 + L1MA4A LINE L1 6084 6303 0 237 290 93 19 chr12 1571243 1571350 -142711139 + MIR SINE MIR 117 231 -31 3273 164 18 37 chr12 1571510 1572250 -142710239 - L1MD2 LINE L1 -456 5903 5175 1374 210 26 11 chr12 1572252 1572604 -142709885 - L1MD2 LINE L1 -1007 5139 4783 1838 126 3 99 chr12 1572615 1572949 -142709540 - AluSx SINE Alu -10 302 1 2632 158 55 2 chr12 1573142 1573666 -142708823 - L1MB3 LINE L1 -1 6182 5631 574 264 34 0 chr12 1574313 1574461 -142708028 + MIR SINE MIR 48 200 -62 2047 124 0 50 chr12 1576604 1576927 -142705562 + AluSx SINE Alu 1 307 -5 1011 182 6 0 chr12 1577264 1577434 -142705055 - AluJb SINE Alu -5 307 137 1983 107 66 17 chr12 1577530 1577819 -142704670 - AluSc SINE Alu -5 304 2 1259 169 76 76 chr12 1577928 1578207 -142704282 + MER2 DNA MER2_type 1 282 -62 2093 130 0 46 chr12 1578207 1578345 -142704144 + AluSx SINE Alu 1 144 -168 2065 108 45 3 chr12 1578345 1578633 -142703856 + AluSx SINE Alu 1 300 -12 2093 130 0 46 chr12 1578633 1578817 -142703672 + AluSx SINE Alu 144 308 -4 1259 169 76 76 chr12 1578817 1578881 -142703608 + MER2 DNA MER2_type 281 344 0 2367 82 7 0 chr12 1579131 1579424 -142703065 - AluSp SINE Alu -18 295 1 229 307 118 8 chr12 1580691 1580818 -142701671 - MIR3 SINE MIR -38 170 30 233 267 44 22 chr12 1580869 1580959 -142701530 + L2 LINE L2 3140 3231 -82 831 108 0 58 chr12 1581185 1581324 -142701165 - FLAM_C SINE Alu -2 131 1 349 314 36 67 chr12 1581585 1581639 -142700850 - MIR SINE MIR -3 259 205 1965 148 0 16 chr12 1581639 1581942 -142700547 - AluJb SINE Alu -14 298 1 349 314 36 67 chr12 1581942 1582081 -142700408 - MIR SINE MIR -57 205 72 1938 123 63 26 chr12 1582260 1582611 -142699878 - THE1B LTR MaLR 0 364 1 2167 148 0 0 chr12 1582617 1582921 -142699568 + AluJb SINE Alu 8 311 -1 2519 56 0 3 chr12 1583427 1583729 -142698760 - AluY SINE Alu -10 301 1 245 164 16 33 chr12 1584148 1584209 -142698280 + CT-rich Low_complexity Low_complexity 4 63 0 2094 99 82 0 chr12 1584849 1585131 -142697358 + AluSq SINE Alu 1 305 -8 237 208 26 26 chr12 1586695 1586772 -142695717 + G-rich Low_complexity Low_complexity 4 80 0 31 26 0 0 chr12 1587161 1587199 -142695290 + GC_rich Low_complexity Low_complexity 1 38 0 43 92 0 0 chr12 1587259 1587379 -142695110 + GC_rich Low_complexity Low_complexity 1 120 0 183 100 0 0 chr12 1587433 1587463 -142695026 + (CCG)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr12 1587528 1587563 -142694926 + GC_rich Low_complexity Low_complexity 1 35 0 1960 143 6 37 chr12 1590870 1591192 -142691297 - AluJb SINE Alu 0 312 1 306 299 0 0 chr12 1591196 1591273 -142691216 + MIR3 SINE MIR 125 201 -7 433 281 100 38 chr12 1592427 1592637 -142689852 + MIR SINE MIR 28 250 -12 637 67 79 0 chr12 1592922 1593011 -142689478 + AluS SINE Alu 2 97 -215 1318 182 10 0 chr12 1593017 1593226 -142689263 - AluJo SINE Alu -101 211 1 820 272 313 5 chr12 1593226 1593354 -142689135 + L2 LINE L2 1983 2070 -1244 1847 184 36 0 chr12 1593354 1593690 -142688799 + MER7A DNA MER2_type 1 346 0 820 272 313 5 chr12 1593690 1594219 -142688270 + L2 LINE L2 2070 2843 -471 667 278 46 49 chr12 1594211 1594495 -142687994 + L2 LINE L2 3030 3312 -1 * 1700 166 42 7 chr12 1594553 1594842 -142687647 + AluJo SINE Alu 1 299 -13 1004 204 11 0 chr12 1595436 1595622 -142686867 - MER20 DNA MER1_type -3 216 29 392 320 76 31 chr12 1596079 1596304 -142686185 + MIR SINE MIR 20 254 -8 615 212 97 6 chr12 1596720 1596885 -142685604 + MER104 DNA MER2_type 1 180 0 2475 71 3 0 chr12 1597698 1597995 -142684494 + AluSc SINE Alu 1 298 -11 371 204 150 84 chr12 1598071 1598238 -142684251 + MIR SINE MIR 85 262 0 2294 106 0 16 chr12 1598604 1598907 -142683582 + AluSx SINE Alu 1 298 -14 390 295 8 0 chr12 1599179 1599196 -142683293 - L1MA10 LINE L1 0 6334 6318 1131 221 26 75 chr12 1599196 1599545 -142682944 - L1ME2 LINE L1 -9 6155 5824 1175 161 19 10 chr12 1599546 1599732 -142682757 - AluJo SINE Alu -5 307 117 207 0 0 0 chr12 1599732 1599755 -142682734 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1175 161 19 10 chr12 1599755 1599773 -142682716 - AluJo SINE Alu -195 117 101 1739 186 48 55 chr12 1599776 1600027 -142682462 - L1MC4a LINE L1 -73 7735 7487 1902 95 0 4 chr12 1600027 1600270 -142682219 - AluSx SINE Alu -16 296 55 1739 186 48 55 chr12 1600270 1600476 -142682013 - L1MC4a LINE L1 -321 7487 7281 862 268 124 29 chr12 1600553 1601030 -142681459 - L1MEc LINE L1 -4323 2073 1552 923 145 0 14 chr12 1601045 1601183 -142681306 + AluJb SINE Alu 1 136 -176 2390 87 10 0 chr12 1601183 1601482 -142681007 + AluY SINE Alu 1 302 -9 993 206 10 20 chr12 1601854 1602058 -142680431 + AluJo SINE Alu 100 301 -11 2431 86 0 0 chr12 1602236 1602537 -142679952 - AluY SINE Alu -10 301 1 283 313 50 0 chr12 1604320 1604419 -142678070 + MIR SINE MIR 70 173 -89 872 214 34 15 chr12 1604419 1604625 -142677864 + MER119 DNA MER1_type 356 565 -18 543 330 18 0 chr12 1604625 1604843 -142677646 - HsTC2c DNA Tc2 -6 723 502 2056 115 100 54 chr12 1604843 1605195 -142677294 + MSTA LTR MaLR 1 335 -93 2360 78 10 0 chr12 1605195 1605491 -142676998 + AluY SINE Alu 1 299 -12 180 0 0 0 chr12 1605496 1605516 -142676973 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2056 115 100 54 chr12 1605516 1605566 -142676923 + MSTA LTR MaLR 338 428 0 8830 129 40 42 chr12 1605568 1606052 -142676437 + MSTA-int LTR MaLR 3 486 -1094 2249 129 3 3 chr12 1606052 1606362 -142676127 + AluSx SINE Alu 1 310 -2 8830 129 40 42 chr12 1606362 1607458 -142675031 + MSTA-int LTR MaLR 486 1580 0 1707 119 116 12 chr12 1607460 1607779 -142674710 + MSTA LTR MaLR 3 354 -74 1098 237 93 11 chr12 1607809 1608164 -142674325 - HsTC2c DNA Tc2 -267 462 79 222 246 116 0 chr12 1608691 1608760 -142673729 - L2 LINE L2 -1527 1787 1711 342 246 73 9 chr12 1609594 1609704 -142672785 + MER103 DNA DNA 2 118 -48 181 338 68 38 chr12 1610438 1610571 -142671918 + L2 LINE L2 3136 3272 0 2405 99 0 0 chr12 1611463 1611765 -142670724 - AluSq SINE Alu -11 302 1 880 114 19 25 chr12 1611952 1612110 -142670379 - L1MB3 LINE L1 -1 6182 6026 267 191 79 0 chr12 1612137 1612200 -142670289 - L1MB3 LINE L1 -161 6022 5955 1973 135 3 21 chr12 1612231 1612519 -142669970 - AluJo SINE Alu -21 291 9 650 146 50 70 chr12 1612527 1612646 -142669843 - L1MB4 LINE L1 -214 5966 5879 2534 61 0 0 chr12 1612646 1612939 -142669550 - AluY SINE Alu -18 293 1 650 146 50 70 chr12 1612939 1613053 -142669436 - L1MB4 LINE L1 -301 5879 5764 3990 133 16 6 chr12 1613091 1613782 -142668707 - L1MA7 LINE L1 0 6291 5594 1199 226 80 23 chr12 1613786 1614087 -142668402 - MLT1A1 LTR MaLR -47 318 1 1661 149 91 84 chr12 1614087 1614171 -142668318 - MLT1A1-int LTR MaLR 0 1735 1653 2412 86 10 0 chr12 1614171 1614475 -142668014 - AluSp SINE Alu -6 307 1 2424 82 13 0 chr12 1614475 1614779 -142667710 - AluSp SINE Alu -5 308 1 1661 149 91 84 chr12 1614779 1615109 -142667380 - MLT1A1-int LTR MaLR -81 1654 1317 281 196 333 0 chr12 1615208 1615310 -142667179 + L2 LINE L2 3137 3272 0 2580 52 0 0 chr12 1615426 1615717 -142666772 - AluY SINE Alu -20 291 1 246 32 0 0 chr12 1615926 1615957 -142666532 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 218 286 18 0 chr12 1616370 1616426 -142666063 - L2 LINE L2 -6 3266 3210 1187 193 42 8 chr12 1616515 1616774 -142665715 - MLT1C LTR MaLR 0 467 200 389 184 13 0 chr12 1616830 1616906 -142665583 - MLT1C LTR MaLR -390 77 1 182 254 115 111 chr12 1616942 1616985 -142665504 + L2 LINE L2 3055 3096 -176 2073 142 0 3 chr12 1616985 1617281 -142665208 - AluSg SINE Alu -15 295 1 182 254 115 111 chr12 1617281 1617454 -142665035 + L2 LINE L2 3096 3272 0 267 103 0 0 chr12 1617454 1617493 -142664996 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 478 255 20 33 chr12 1617835 1617988 -142664501 - MER5B DNA MER1_type -26 152 2 427 220 44 0 chr12 1617989 1618080 -142664409 - MIR3 SINE MIR -48 160 66 377 303 16 16 chr12 1618250 1618372 -142664117 + L2 LINE L2 3191 3312 -1 * 473 286 18 75 chr12 1618351 1618493 -142663996 - MIR SINE MIR 0 262 134 2253 98 14 0 chr12 1618493 1618812 -142663677 + AluSx SINE Alu 1 323 0 473 286 18 75 chr12 1618812 1618894 -142663595 - MIR SINE MIR -128 134 49 477 0 0 0 chr12 1619197 1619250 -142663239 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr12 1619899 1619921 -142662568 + AT_rich Low_complexity Low_complexity 1 22 0 850 172 14 0 chr12 1619922 1620067 -142662422 - FRAM SINE Alu -25 151 5 272 325 158 17 chr12 1620824 1620944 -142661545 + MIR SINE MIR 16 152 -56 800 201 6 13 chr12 1620945 1621104 -142661385 + FRAM SINE Alu 1 158 -8 2198 130 0 0 chr12 1621106 1621441 -142661048 + AluSq SINE Alu 1 313 0 266 197 21 14 chr12 1622779 1622861 -142659628 + (TA)n Simple_repeat Simple_repeat 1 82 0 * 6746 163 90 38 chr12 1622857 1623631 -142658858 + L1MCa LINE L1 117 849 -5691 1942 93 3 87 chr12 1623631 1623963 -142658526 + AluSx SINE Alu 1 304 -8 6746 163 90 38 chr12 1623963 1625131 -142657358 + L1MCa LINE L1 849 2262 -4278 1395 74 26 0 chr12 1625131 1625321 -142657168 + AluSg/x SINE Alu 100 294 -16 391 188 0 0 chr12 1625321 1625390 -142657099 + L1MCa LINE L1 2582 2650 -3890 183 184 0 0 chr12 1625730 1625768 -142656721 + CT-rich Low_complexity Low_complexity 1 38 0 2467 53 0 0 chr12 1625845 1626149 -142656340 - AluY SINE Alu -6 305 2 777 256 58 5 chr12 1626573 1626883 -142655606 - LTR16C LTR ERVL 0 491 126 2377 74 3 3 chr12 1627646 1627958 -142654531 - AluSp SINE Alu -1 312 1 293 311 0 0 chr12 1628301 1628375 -142654114 - L2 LINE L2 -6 3307 3234 577 234 38 13 chr12 1628678 1628836 -142653653 - L1MA10 LINE L1 -2 6332 6171 381 305 198 59 chr12 1629093 1629735 -142652754 - L2 LINE L2 -481 2833 2103 * 411 303 135 19 chr12 1629683 1629891 -142652598 + L2 LINE L2 3022 3253 -19 223 306 128 37 chr12 1630061 1630173 -142652316 - L2 LINE L2 -246 3026 2926 2365 85 0 0 chr12 1630173 1630479 -142652010 + AluSp SINE Alu 1 306 -7 223 306 128 37 chr12 1630479 1630678 -142651811 - L2 LINE L2 -346 2926 2686 463 276 17 22 chr12 1630794 1630975 -142651514 + G-rich Low_complexity Low_complexity 1 180 0 22 0 0 0 chr12 1631353 1631375 -142651114 + AT_rich Low_complexity Low_complexity 1 22 0 247 133 22 78 chr12 1631756 1631846 -142650643 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 195 380 0 0 chr12 1633214 1633285 -142649204 + L2 LINE L2 3241 3311 -2 2059 114 7 0 chr12 1634809 1635107 -142647382 + AluSx SINE Alu 1 300 -12 2084 99 14 3 chr12 1635784 1636077 -142646412 + AluSx SINE Alu 1 296 -16 1906 132 7 3 chr12 1638293 1638721 -142643768 + AluSx SINE Alu 1 429 0 32 0 0 0 chr12 1639560 1639592 -142642897 + AT_rich Low_complexity Low_complexity 1 32 0 1697 124 4 26 chr12 1640534 1640807 -142641682 + AluJo SINE Alu 22 288 -24 2460 50 0 0 chr12 1641567 1641864 -142640625 + AluY SINE Alu 1 297 -14 823 132 0 0 chr12 1642705 1642826 -142639663 + FRAM SINE Alu 43 163 -13 685 182 25 0 chr12 1642832 1642953 -142639536 - FLAM_A SINE Alu -9 124 1 2357 62 3 19 chr12 1643406 1643715 -142638774 + AluSp SINE Alu 1 304 -9 1928 127 3 35 chr12 1645556 1645870 -142636619 + AluJb SINE Alu 1 304 -8 234 156 0 0 chr12 1645909 1645954 -142636535 + GA-rich Low_complexity Low_complexity 4 48 0 384 248 199 28 chr12 1645968 1646109 -142636380 + MIR SINE MIR 46 210 -52 307 41 41 0 chr12 1648632 1648681 -142633808 + (TA)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr12 1650607 1650634 -142631855 + (CCG)n Simple_repeat Simple_repeat 2 28 0 201 288 25 25 chr12 1650647 1650765 -142631724 + C-rich Low_complexity Low_complexity 6 123 0 285 221 35 9 chr12 1650819 1650932 -142631557 + (CCG)n Simple_repeat Simple_repeat 3 118 0 39 50 0 0 chr12 1650933 1650993 -142631496 + GC_rich Low_complexity Low_complexity 1 60 0 25 95 0 0 chr12 1651240 1651314 -142631175 + GC_rich Low_complexity Low_complexity 1 74 0 310 276 23 11 chr12 1653335 1653422 -142629067 + MIR3 SINE MIR 106 193 -15 459 0 0 0 chr12 1653963 1654014 -142628475 + (TA)n Simple_repeat Simple_repeat 2 52 0 1969 113 0 17 chr12 1654071 1654372 -142628117 + AluSx SINE Alu 1 296 -16 199 253 88 66 chr12 1654384 1654475 -142628014 + L2 LINE L2 3180 3272 0 1504 171 23 7 chr12 1654725 1655012 -142627477 + L1MB2 LINE L1 5280 5558 -625 856 132 0 23 chr12 1655013 1655142 -142627347 + FLAM_C SINE Alu 1 126 -17 3348 158 14 11 chr12 1655143 1655706 -142626783 + L1MB2 LINE L1 5557 6121 -50 1080 66 7 0 chr12 1655706 1655842 -142626647 + AluSp SINE Alu 1 137 -176 2217 104 3 0 chr12 1655843 1656151 -142626338 + AluSp SINE Alu 4 312 -1 255 130 65 0 chr12 1656151 1656197 -142626292 + L1MB2 LINE L1 6121 6169 -2 226 275 0 62 chr12 1656430 1656510 -142625979 + MER94 DNA DNA 2 76 -58 1533 149 30 37 chr12 1656821 1657116 -142625373 + AluJo SINE Alu 1 293 -19 1701 144 0 14 chr12 1657564 1657841 -142624648 + AluJb SINE Alu 1 273 -39 530 233 83 79 chr12 1658157 1658385 -142624104 + MIR SINE MIR 34 262 0 2163 92 3 3 chr12 1658528 1658823 -142623666 + AluSg SINE Alu 1 295 -15 2154 105 0 0 chr12 1659047 1659341 -142623148 - AluSx SINE Alu -18 294 1 269 234 0 4 chr12 1659371 1659465 -142623024 - MER5A DNA MER1_type -2 187 57 575 327 31 13 chr12 1659705 1659931 -142622558 + MIR SINE MIR 7 236 -26 738 288 60 44 chr12 1659938 1660188 -142622301 - MIR SINE MIR -8 254 1 2171 150 35 8 chr12 1660263 1660348 -142622141 + L1MA5 LINE L1 5889 5970 -330 1778 134 3 3 chr12 1660348 1660631 -142621858 + AluJo SINE Alu 6 288 -24 2171 150 35 8 chr12 1660631 1660946 -142621543 + L1MA5 LINE L1 5970 6300 0 408 175 12 6 chr12 1661232 1661398 -142621091 + (TG)n Simple_repeat Simple_repeat 1 167 0 193 143 20 31 chr12 1661421 1661519 -142620970 + (TG)n Simple_repeat Simple_repeat 1 97 0 419 191 6 0 chr12 1661548 1661710 -142620779 + (TG)n Simple_repeat Simple_repeat 1 163 0 2132 95 3 0 chr12 1663087 1663372 -142619117 + AluSx SINE Alu 1 286 -26 234 81 0 0 chr12 1663374 1663411 -142619078 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 2182 111 10 0 chr12 1663487 1663794 -142618695 + AluSg SINE Alu 1 310 0 2171 82 0 30 chr12 1664123 1664426 -142618063 - AluSx SINE Alu -18 294 1 1694 124 16 60 chr12 1665538 1665853 -142616636 - AluJb SINE Alu -11 301 1 1817 162 0 0 chr12 1666013 1666355 -142616134 - AluJo SINE Alu 0 312 1 454 171 36 45 chr12 1666451 1666562 -142615927 + L1ME3 LINE L1 6052 6161 -1 22 0 0 0 chr12 1666563 1666585 -142615904 + AT_rich Low_complexity Low_complexity 1 22 0 783 171 0 0 chr12 1666970 1667087 -142615402 + FLAM_C SINE Alu 1 117 -16 25 31 0 0 chr12 1667087 1667119 -142615370 + AT_rich Low_complexity Low_complexity 1 32 0 2437 69 0 0 chr12 1667540 1667844 -142614645 - AluY SINE Alu -7 304 1 343 284 90 45 chr12 1669038 1669172 -142613317 + L1ME LINE L1 5353 5492 -629 428 303 39 3 chr12 1669338 1669479 -142613010 - MIR3 SINE MIR -5 203 57 1788 139 7 3 chr12 1669700 1669987 -142612502 - AluJo SINE Alu -24 288 1 863 291 54 31 chr12 1670153 1670541 -142611948 - MLT1J2 LTR MaLR 0 450 54 214 293 48 85 chr12 1671181 1671369 -142611120 + L2 LINE L2 2613 2793 -521 257 109 22 0 chr12 1671440 1671486 -142611003 + CT-rich Low_complexity Low_complexity 2 48 0 996 159 63 11 chr12 1672280 1672469 -142610020 + MER3 DNA MER1_type 8 206 -3 231 311 14 14 chr12 1672570 1672644 -142609845 - MIR SINE MIR -3 259 186 26 0 0 0 chr12 1673752 1673778 -142608711 + AT_rich Low_complexity Low_complexity 1 26 0 1919 149 20 7 chr12 1673815 1674110 -142608379 + AluJb SINE Alu 13 311 -1 1907 146 7 10 chr12 1674307 1674602 -142607887 + AluJo SINE Alu 1 294 -18 879 258 47 86 chr12 1676493 1676981 -142605508 - L1ME3A LINE L1 0 6170 5702 1192 137 0 6 chr12 1676981 1677156 -142605333 - AluSc SINE Alu -4 305 132 2351 82 3 0 chr12 1677156 1677447 -142605042 - AluSc SINE Alu -13 296 5 252 403 26 0 chr12 1677587 1677741 -142604748 - L2 LINE L2 -740 2574 2417 1689 164 60 11 chr12 1678014 1678295 -142604194 - AluJo SINE Alu -17 295 1 1733 31 0 0 chr12 1678555 1678748 -142603741 - AluY SINE Alu -6 305 113 276 331 126 38 chr12 1679121 1679384 -142603105 - L2 LINE L2 -1 3312 3027 219 309 22 116 chr12 1679529 1679635 -142602854 - L2 LINE L2 -474 2840 2756 2637 61 0 0 chr12 1679635 1679945 -142602544 - AluY SINE Alu -1 310 1 219 309 22 116 chr12 1679945 1680019 -142602470 - L2 LINE L2 -558 2756 2677 2256 96 33 0 chr12 1680555 1680858 -142601631 + AluSq SINE Alu 1 313 0 469 279 137 5 chr12 1680920 1681110 -142601379 + MIR SINE MIR 48 262 0 2290 125 3 0 chr12 1682102 1682413 -142600076 - AluSx SINE Alu 0 312 1 1891 151 68 0 chr12 1682417 1682709 -142599780 - AluJo SINE Alu 0 312 1 2382 95 3 0 chr12 1682718 1683013 -142599476 - AluSp SINE Alu -17 296 1 2450 68 0 3 chr12 1683020 1683315 -142599174 - AluY SINE Alu -17 294 1 245 345 117 34 chr12 1683384 1683648 -142598841 - L2 LINE L2 -1 3312 3027 340 225 0 56 chr12 1684366 1684455 -142598034 + L2 LINE L2 3230 3313 0 1846 125 4 8 chr12 1684611 1684875 -142597614 - AluSx SINE Alu -16 296 34 218 192 19 0 chr12 1685360 1685412 -142597077 + (TG)n Simple_repeat Simple_repeat 1 53 0 21 36 0 0 chr12 1685492 1685520 -142596969 + AT_rich Low_complexity Low_complexity 1 28 0 204 184 41 20 chr12 1688990 1689039 -142593450 + L2 LINE L2 3221 3270 -2 895 108 0 8 chr12 1690382 1690502 -142591987 + FLAM_C SINE Alu 9 127 -16 604 313 102 16 chr12 1691765 1692011 -142590478 + L3 LINE CR1 1160 1426 -151 2510 157 50 18 chr12 1692613 1692948 -142589541 - L1MB7 LINE L1 -8 6176 5854 396 0 0 0 chr12 1692948 1692992 -142589497 + (TA)n Simple_repeat Simple_repeat 1 44 0 1796 161 10 30 chr12 1692993 1693153 -142589336 - AluJo SINE Alu -14 298 136 279 0 0 0 chr12 1693153 1693184 -142589305 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 2109 106 29 0 chr12 1693184 1693458 -142589031 - AluSq SINE Alu -31 282 1 1796 161 10 30 chr12 1693458 1693600 -142588889 - AluJo SINE Alu -174 138 1 2510 157 50 18 chr12 1693600 1693777 -142588712 - L1MB7 LINE L1 -329 5855 5645 840 115 56 133 chr12 1693778 1693906 -142588583 - Tigger1 DNA MER2_type -1 2417 2313 2262 84 0 45 chr12 1693906 1694214 -142588275 + AluSg SINE Alu 1 294 -16 840 115 56 133 chr12 1694214 1694319 -142588170 - Tigger1 DNA MER2_type -105 2313 2202 740 151 24 78 chr12 1694308 1694417 -142588072 - Tigger1 DNA MER2_type -2261 157 57 * 2176 96 7 0 chr12 1694417 1694727 -142587762 + AluY SINE Alu 1 312 0 740 151 24 78 chr12 1694727 1694782 -142587707 - Tigger1 DNA MER2_type -2361 57 1 944 191 87 48 chr12 1694786 1695016 -142587473 - L1MB7 LINE L1 -542 5642 5404 2502 55 3 3 chr12 1695578 1695887 -142586602 - AluY SINE Alu -2 309 1 310 321 36 0 chr12 1695887 1695999 -142586490 + L3 LINE CR1 1282 1397 -180 188 0 74 0 chr12 1696628 1696655 -142585834 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2392 94 0 3 chr12 1697553 1697852 -142584637 + AluSx SINE Alu 1 298 -14 2246 101 26 13 chr12 1697971 1698279 -142584210 + AluSx SINE Alu 1 312 0 2469 67 3 7 chr12 1699816 1700115 -142582374 - AluSp SINE Alu -14 299 2 180 77 0 0 chr12 1700137 1700163 -142582326 + (T)n Simple_repeat Simple_repeat 1 26 0 209 169 17 0 chr12 1700220 1700279 -142582210 + (TA)n Simple_repeat Simple_repeat 1 60 0 259 225 42 14 chr12 1700838 1700909 -142581580 + MIR SINE MIR 81 153 -109 192 77 0 0 chr12 1701678 1701704 -142580785 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 979 173 0 0 chr12 1701707 1701863 -142580626 - AluJo SINE Alu -30 282 127 23 54 0 0 chr12 1702751 1702788 -142579701 + AT_rich Low_complexity Low_complexity 1 37 0 2169 136 3 0 chr12 1704551 1704846 -142577643 + AluSx SINE Alu 1 296 -16 211 344 21 11 chr12 1705447 1705540 -142576949 - MIR3 SINE MIR -7 201 108 335 271 164 8 chr12 1705547 1705669 -142576820 - MER5A DNA MER1_type -35 154 14 393 70 0 0 chr12 1706553 1706610 -142575879 + (TG)n Simple_repeat Simple_repeat 2 58 0 183 80 0 0 chr12 1707362 1707387 -142575102 + (GA)n Simple_repeat Simple_repeat 2 26 0 470 255 26 39 chr12 1707669 1707822 -142574667 + L2 LINE L2 3163 3313 0 342 0 0 0 chr12 1708054 1708092 -142574397 + (TC)n Simple_repeat Simple_repeat 1 38 0 2416 75 0 19 chr12 1708850 1709168 -142573321 + AluSq SINE Alu 1 312 -1 21 36 0 0 chr12 1709510 1709538 -142572951 + AT_rich Low_complexity Low_complexity 1 28 0 2015 103 3 59 chr12 1709538 1709858 -142572631 + AluSx SINE Alu 1 302 -10 501 271 112 0 chr12 1710119 1710289 -142572200 - MIR SINE MIR 0 262 74 1749 157 13 41 chr12 1710508 1710653 -142571836 + AluJo SINE Alu 1 149 -163 1867 152 7 24 chr12 1710653 1710949 -142571540 + AluJo SINE Alu 1 291 -21 1749 157 13 41 chr12 1710949 1711121 -142571368 + AluJo SINE Alu 149 309 -3 727 211 0 0 chr12 1712251 1712379 -142570110 + FLAM_C SINE Alu 2 129 -14 299 257 9 55 chr12 1712382 1712491 -142569998 - MER5B DNA MER1_type -58 120 17 677 166 72 122 chr12 1712677 1712825 -142569664 + FAM SINE Alu 4 143 -168 2033 109 46 7 chr12 1712825 1713108 -142569381 - AluSg SINE Alu -16 294 1 677 166 72 122 chr12 1713108 1713140 -142569349 + FAM SINE Alu 143 175 0 1554 209 7 7 chr12 1713788 1714090 -142568399 - AluJo SINE Alu -10 302 1 901 156 0 7 chr12 1714091 1714232 -142568257 - FLAM_C SINE Alu -1 142 3 2370 106 3 0 chr12 1714645 1714956 -142567533 - AluSx SINE Alu 0 312 1 1018 172 0 0 chr12 1715353 1715510 -142566979 + FRAM SINE Alu 1 157 -19 2409 88 0 13 chr12 1715883 1716189 -142566300 - AluSx SINE Alu -10 302 1 514 255 127 0 chr12 1717123 1717280 -142565209 - MER69A DNA AcHobo 0 177 1 180 188 24 12 chr12 1718294 1718379 -142564110 + (CGGGG)n Simple_repeat Simple_repeat 5 90 0 403 98 0 109 chr12 1718761 1718944 -142563545 + (CCCCCT)n Simple_repeat Simple_repeat 5 167 0 417 97 0 113 chr12 1721456 1721651 -142560838 + (CCCCCT)n Simple_repeat Simple_repeat 5 177 0 294 241 0 25 chr12 1721654 1721733 -142560756 + C-rich Low_complexity Low_complexity 5 81 0 243 339 16 31 chr12 1722508 1722635 -142559854 + L2 LINE L2 3188 3312 -1 862 171 13 4 chr12 1722635 1722869 -142559620 + GA-rich Low_complexity Low_complexity 1 236 0 2233 120 3 0 chr12 1723240 1723549 -142558940 + AluSg SINE Alu 1 310 0 2162 142 0 0 chr12 1723566 1723875 -142558614 + AluJb SINE Alu 1 309 -3 408 231 112 28 chr12 1723913 1724056 -142558433 - L1MC4 LINE L1 -1393 6649 6495 863 262 86 92 chr12 1724482 1724692 -142557797 + L1MB3 LINE L1 5131 5341 -780 2407 80 3 3 chr12 1724692 1724992 -142557497 - AluSp SINE Alu -13 300 1 863 262 86 92 chr12 1724992 1725432 -142557057 + L1MB3 LINE L1 5341 5785 -336 478 134 56 14 chr12 1726070 1726212 -142556277 + (CAGAGA)n Simple_repeat Simple_repeat 3 150 0 1749 160 0 17 chr12 1726362 1726662 -142555827 + AluJb SINE Alu 1 295 -17 1498 169 31 79 chr12 1726821 1727132 -142555357 + L1MB3 LINE L1 5817 6120 -63 1399 161 13 95 chr12 1727132 1727448 -142555041 - AluJo SINE Alu -22 290 1 1498 169 31 79 chr12 1727448 1727510 -142554979 + L1MB3 LINE L1 6120 6183 0 2139 116 7 7 chr12 1728668 1728970 -142553519 - AluSg SINE Alu -8 302 1 391 294 8 8 chr12 1730482 1730608 -142551881 + L1MC5 LINE L1 7721 7846 -115 1854 166 3 0 chr12 1730624 1730925 -142551564 + AluJb SINE Alu 1 302 -10 2556 60 0 0 chr12 1730970 1731272 -142551217 + AluY SINE Alu 1 302 -9 2345 94 0 0 chr12 1731468 1731766 -142550723 - AluSx SINE Alu -14 298 1 439 264 0 9 chr12 1731769 1731879 -142550610 + MIR3 SINE MIR 81 189 -19 2423 92 0 0 chr12 1731962 1732266 -142550223 - AluSx SINE Alu -8 304 1 3399 178 46 24 chr12 1732266 1732400 -142550089 - L1M4 LINE L1 -725 5453 5323 2005 125 7 0 chr12 1732400 1732705 -142549784 - AluSg SINE Alu 0 307 1 3399 178 46 24 chr12 1732705 1733394 -142549095 - L1M4 LINE L1 -855 5323 4613 495 233 67 0 chr12 1733433 1733553 -142548936 + L2 LINE L2 3183 3310 -3 2220 103 3 0 chr12 1733662 1733954 -142548535 - AluSx SINE Alu -17 295 3 1690 129 4 16 chr12 1734001 1734257 -142548232 + AluSx SINE Alu 44 296 -16 2228 103 7 10 chr12 1734259 1734569 -142547920 + AluY SINE Alu 1 309 -2 481 226 147 49 chr12 1734598 1734802 -142547687 - L1ME LINE L1 -416 5729 5506 581 241 133 95 chr12 1734938 1735395 -142547094 - L1MEd LINE L1 -4730 1580 1026 2268 102 3 0 chr12 1735395 1735689 -142546800 - AluSx SINE Alu -17 295 1 581 241 133 95 chr12 1735689 1735894 -142546595 - L1MEd LINE L1 -5284 1026 830 303 273 0 26 chr12 1735959 1736036 -142546453 - L1MEd LINE L1 -5603 516 442 382 253 26 89 chr12 1736063 1736157 -142546332 - L1MEd LINE L1 -5918 201 103 1533 185 52 11 chr12 1736157 1736443 -142546046 - AluJo SINE Alu -14 298 1 2244 99 0 0 chr12 1736447 1736741 -142545748 - AluSg SINE Alu -16 294 1 382 253 26 89 chr12 1736741 1736831 -142545658 - L1MEd LINE L1 -6019 100 24 462 85 0 0 chr12 1736973 1737032 -142545457 + Alu SINE Alu 234 292 -18 312 278 196 21 chr12 1737223 1737417 -142545072 - L2 LINE L2 -494 2820 2593 2342 99 0 0 chr12 1737939 1738242 -142544247 - AluSg SINE Alu -7 303 1 201 131 66 16 chr12 1738569 1738630 -142543859 + (TTATA)n Simple_repeat Simple_repeat 4 67 0 293 273 0 13 chr12 1738711 1738788 -142543701 - L2 LINE L2 -1 3271 3196 2274 94 3 0 chr12 1738864 1739152 -142543337 + AluSx SINE Alu 1 289 -23 1656 165 14 30 chr12 1739254 1739551 -142542938 - AluJo SINE Alu -20 292 1 1156 247 8 8 chr12 1739836 1740087 -142542402 + MIR SINE MIR 12 262 0 675 198 0 95 chr12 1741133 1741239 -142541250 - MER45A DNA AcHobo -1413 168 85 2210 117 0 3 chr12 1741239 1741547 -142540942 + AluSq SINE Alu 1 307 -6 675 198 0 95 chr12 1741547 1741625 -142540864 - MER45A DNA AcHobo -1496 85 1 215 294 110 18 chr12 1741649 1741725 -142540764 - MER5B DNA MER1_type -26 152 62 1913 125 69 0 chr12 1741725 1742014 -142540475 - AluJo SINE Alu -3 309 1 215 294 110 18 chr12 1742014 1742046 -142540443 - MER5B DNA MER1_type -116 62 34 1994 124 7 3 chr12 1742114 1742422 -142540067 - AluY SINE Alu 0 309 1 1931 141 0 20 chr12 1742424 1742723 -142539766 - AluJo SINE Alu -19 293 1 1681 149 67 0 chr12 1742728 1743017 -142539472 - AluSx SINE Alu 0 307 1 3531 198 61 35 chr12 1744085 1744117 -142538372 + L1ME2 LINE L1 5254 5284 -880 2186 138 0 0 chr12 1744117 1744422 -142538067 + AluSx SINE Alu 1 305 -7 3531 198 61 35 chr12 1744422 1744859 -142537630 + L1ME2 LINE L1 5284 5708 -456 1822 183 0 0 chr12 1744859 1745165 -142537324 + AluJo SINE Alu 5 310 -2 3531 198 61 35 chr12 1745165 1745573 -142536916 + L1ME2 LINE L1 5708 6155 -9 2598 51 0 3 chr12 1746049 1746360 -142536129 - AluY SINE Alu -1 310 1 867 158 47 0 chr12 1746989 1747116 -142535373 + FLAM_C SINE Alu 1 133 0 1151 126 6 0 chr12 1747171 1747330 -142535159 - FRAM SINE Alu -2 164 5 2295 100 3 3 chr12 1748143 1748443 -142534046 - AluSx SINE Alu -12 300 1 202 224 30 15 chr12 1749969 1750036 -142532453 + (CGG)n Simple_repeat Simple_repeat 1 68 0 186 43 0 0 chr12 1750055 1750078 -142532411 + (CGG)n Simple_repeat Simple_repeat 3 25 0 218 244 0 0 chr12 1750092 1750133 -142532356 + C-rich Low_complexity Low_complexity 1 41 0 1008 209 0 71 chr12 1751771 1751846 -142530643 + MER58A DNA MER1_type 1 80 -2340 2214 125 0 0 chr12 1751846 1752150 -142530339 + AluSq SINE Alu 1 304 -9 1008 209 0 71 chr12 1752150 1752313 -142530176 + MER58A DNA MER1_type 80 222 -2 2272 87 19 16 chr12 1752494 1752806 -142529683 - AluSq SINE Alu 0 313 1 848 272 37 16 chr12 1752993 1753236 -142529253 - MIR SINE MIR -10 252 5 1882 164 52 12 chr12 1753294 1753623 -142528866 + MER2 DNA MER2_type 3 344 0 891 189 90 0 chr12 1753772 1753984 -142528505 - L1MC2 LINE L1 -3 6341 6111 865 191 42 0 chr12 1753985 1754153 -142528336 - AluJb SINE Alu -1 311 137 770 183 34 57 chr12 1754167 1754342 -142528147 + AluJo SINE Alu 126 296 -16 2134 113 0 29 chr12 1754345 1754655 -142527834 + AluSq SINE Alu 1 301 -12 201 171 0 0 chr12 1754807 1754842 -142527647 + T-rich Low_complexity Low_complexity 1 35 0 1727 194 0 6 chr12 1755356 1755670 -142526819 - AluJo SINE Alu 0 312 1 297 0 0 0 chr12 1757180 1757213 -142525276 + (TG)n Simple_repeat Simple_repeat 2 34 0 1583 170 57 11 chr12 1757214 1757496 -142524993 - AluJb SINE Alu -17 295 1 327 291 36 9 chr12 1757730 1757840 -142524649 - L1ME LINE L1 -513 5608 5496 205 277 191 32 chr12 1758087 1758181 -142524308 + L2 LINE L2 3146 3254 -18 2058 104 10 7 chr12 1758310 1758439 -142524050 + AluSp SINE Alu 2 129 -184 202 0 29 57 chr12 1758439 1758474 -142524015 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2058 104 10 7 chr12 1758474 1758641 -142523848 + AluSp SINE Alu 129 299 -14 1615 180 31 3 chr12 1760101 1760395 -142522094 - AluJb SINE Alu -10 302 1 392 189 14 0 chr12 1760536 1760610 -142521879 + MER116 DNA Mariner 6 80 0 372 181 32 76 chr12 1760617 1760787 -142521702 - L1ME LINE L1 -301 5820 5658 2223 120 3 0 chr12 1760813 1761121 -142521368 + AluSx SINE Alu 1 309 -3 315 207 413 0 chr12 1761126 1761247 -142521242 - MER112 DNA MER1_type -23 237 67 345 288 89 57 chr12 1761271 1761587 -142520902 - L1ME LINE L1 -2155 5653 5328 307 266 213 12 chr12 1761627 1761796 -142520693 - L1ME LINE L1 -858 5288 5086 523 228 29 29 chr12 1761798 1761934 -142520555 + LTR49 LTR ERV1 459 594 -1 349 278 130 60 chr12 1762029 1762382 -142520107 + L1ME4a LINE L1 5679 6056 -65 1464 171 80 8 chr12 1762427 1762720 -142519769 + AluJb SINE Alu 1 312 0 1015 208 20 15 chr12 1762780 1762982 -142519507 - AluJo SINE Alu -105 207 5 208 241 0 0 chr12 1762989 1763047 -142519442 + T-rich Low_complexity Low_complexity 1 58 0 226 224 35 0 chr12 1763047 1763105 -142519384 - L1ME LINE L1 -1162 4984 4925 346 172 0 16 chr12 1764325 1764343 -142518146 - MER46A DNA MER2_type -75 161 145 1636 127 156 0 chr12 1764343 1764626 -142517863 + MER46B DNA MER2_type 1 202 -34 507 261 112 12 chr12 1764806 1764967 -142517522 + MIR SINE MIR 5 181 -81 291 335 89 0 chr12 1765129 1765287 -142517202 + MIR SINE MIR 65 236 -26 2562 244 113 48 chr12 1765573 1765818 -142516671 - L1ME1 LINE L1 -5 6161 5933 842 208 13 0 chr12 1765818 1765972 -142516517 + FRAM SINE Alu 1 156 -10 2562 244 113 48 chr12 1765972 1766435 -142516054 - L1ME1 LINE L1 -233 5933 5501 1462 177 39 45 chr12 1766435 1766746 -142515743 - AluJb SINE Alu -3 309 1 2562 244 113 48 chr12 1766746 1766942 -142515547 - L1ME1 LINE L1 -665 5501 5319 1048 185 106 97 chr12 1766942 1767283 -142515206 - MER2 DNA MER2_type 0 344 1 2562 244 113 48 chr12 1767283 1767697 -142514792 - L1ME1 LINE L1 -847 5319 4933 2306 98 3 0 chr12 1767697 1767992 -142514497 - AluSx SINE Alu -16 296 1 2562 244 113 48 chr12 1767992 1768398 -142514091 - L1ME1 LINE L1 -1233 4933 4319 31 26 0 0 chr12 1768699 1768737 -142513752 + AT_rich Low_complexity Low_complexity 1 38 0 1248 112 122 5 chr12 1769013 1769210 -142513279 + LTR12 LTR ERV1 66 285 -429 312 244 11 0 chr12 1769211 1769301 -142513188 + LTR30 LTR ERV1 553 643 -79 801 107 1 15 chr12 1769301 1769427 -142513062 + LTR12 LTR ERV1 301 584 -130 * 2162 120 3 6 chr12 1769422 1769746 -142512743 + HERV9 LTR ERV1 73 395 -8004 * 5703 102 1 1 chr12 1769726 1770507 -142511982 - HERV9 LTR ERV1 -116 8283 7503 829 129 188 8 chr12 1770505 1770761 -142511728 - HERV9 LTR ERV1 -5755 1141 840 * 26667 91 16 22 chr12 1770748 1774472 -142508017 - HERV9 LTR ERV1 -3447 4952 1252 281 114 0 23 chr12 1774489 1774533 -142507956 - HERV9 LTR ERV1 -2789 5610 5568 * 1000 145 6 12 chr12 1774513 1774670 -142507819 + pTR5 LTR ERV1 587 742 -1696 1715 103 96 4 chr12 1774670 1774931 -142507558 + LTR12 LTR ERV1 1 285 -429 295 264 11 0 chr12 1774931 1775022 -142507467 + LTR30 LTR ERV1 552 643 -79 731 118 2 2 chr12 1775022 1775139 -142507350 + LTR12 LTR ERV1 170 582 -132 2259 105 7 0 chr12 1776400 1776695 -142505794 + AluSp SINE Alu 3 299 -14 278 304 0 33 chr12 1776805 1776897 -142505592 + L2 LINE L2 3219 3307 -6 336 208 0 0 chr12 1777504 1777576 -142504913 - L1ME1 LINE L1 -5 6161 6090 681 296 69 9 chr12 1778376 1778609 -142503880 + MIR SINE MIR 10 256 -6 2005 134 10 13 chr12 1778637 1778950 -142503539 - AluSx SINE Alu 0 312 1 247 290 75 56 chr12 1778960 1779067 -142503422 - L2 LINE L2 -42 3230 3122 309 236 14 42 chr12 1779203 1779275 -142503214 - L2 LINE L2 -1 3312 3243 2964 104 76 17 chr12 1779276 1779747 -142502742 - MER1A DNA MER1_type -30 499 1 489 174 10 10 chr12 1779759 1779857 -142502632 + MER4A LTR ERV1 1 98 -566 1359 129 182 116 chr12 1779857 1780179 -142502310 + MER4A LTR ERV1 261 613 -51 2377 100 7 0 chr12 1780179 1780489 -142502000 - AluSx SINE Alu 0 312 1 1359 129 182 116 chr12 1780489 1780545 -142501944 + MER4A LTR ERV1 613 664 0 1706 252 137 24 chr12 1780546 1781447 -142501042 - L2 LINE L2 -74 3239 2230 335 214 84 104 chr12 1781476 1781630 -142500859 - L2 LINE L2 -1417 1897 1747 1738 123 27 61 chr12 1782321 1782647 -142499842 + AluSx SINE Alu 1 316 0 239 122 0 0 chr12 1782677 1782718 -142499771 + L1MC/D LINE L1 5879 5919 -440 2836 154 35 53 chr12 1782720 1782958 -142499531 + L1MB3 LINE L1 5561 5802 -381 2237 98 0 3 chr12 1782958 1783254 -142499235 - AluSg SINE Alu -15 295 1 2836 154 35 53 chr12 1783254 1783637 -142498852 + L1MB3 LINE L1 5802 6171 -12 1205 144 0 0 chr12 1783656 1783836 -142498653 - AluJb SINE Alu -4 308 129 187 289 0 0 chr12 1783873 1783918 -142498571 - L2 LINE L2 0 3272 3228 2183 104 20 7 chr12 1784095 1784393 -142498096 - AluSq SINE Alu -11 302 1 303 284 25 0 chr12 1784595 1784676 -142497813 - L2 LINE L2 -6 3307 3225 483 237 105 0 chr12 1784869 1784983 -142497506 - L2 LINE L2 0 3313 3188 2152 122 0 0 chr12 1785175 1785471 -142497018 - AluSq SINE Alu -17 296 1 223 321 0 18 chr12 1785535 1785591 -142496898 + MIR SINE MIR 34 88 -120 * 276 310 118 68 chr12 1785553 1785995 -142496494 + L2 LINE L2 2088 2551 -763 305 325 87 16 chr12 1786036 1786162 -142496327 + L2 LINE L2 2937 3071 -201 28 29 0 0 chr12 1786437 1786472 -142496017 + AT_rich Low_complexity Low_complexity 1 35 0 2174 102 14 3 chr12 1787089 1787383 -142495106 - AluSq SINE Alu -16 297 1 2360 96 0 3 chr12 1787415 1787728 -142494761 + AluSx SINE Alu 1 312 0 207 0 0 0 chr12 1787933 1787956 -142494533 + (T)n Simple_repeat Simple_repeat 1 23 0 22 70 0 0 chr12 1788300 1788343 -142494146 + AT_rich Low_complexity Low_complexity 1 43 0 29 28 0 0 chr12 1788418 1788454 -142494035 + AT_rich Low_complexity Low_complexity 1 36 0 855 173 0 0 chr12 1788454 1788587 -142493902 - FLAM_C SINE Alu 0 133 1 216 0 0 0 chr12 1788592 1788616 -142493873 + (T)n Simple_repeat Simple_repeat 1 24 0 2517 70 0 0 chr12 1789310 1789612 -142492877 + AluY SINE Alu 1 302 -9 1325 165 150 0 chr12 1790038 1790298 -142492191 - AluJo SINE Alu -13 299 1 1660 173 67 6 chr12 1790306 1790652 -142491837 - L1MB4 LINE L1 0 6180 5814 2134 120 0 13 chr12 1790652 1790961 -142491528 + AluSx SINE Alu 1 305 -7 3450 136 60 12 chr12 1790991 1791646 -142490843 - L1MC2 LINE L1 -15 6329 5644 20660 30 9 7 chr12 1792585 1795898 -142486591 - L1PA4 LINE L1 -3 6152 2838 309 288 116 14 chr12 1795976 1796122 -142486367 + MIR SINE MIR 37 197 -65 1586 121 128 12 chr12 1796568 1796825 -142485664 - AluSg SINE Alu -23 287 1 1753 174 3 33 chr12 1797065 1797364 -142485125 + AluJb SINE Alu 1 290 -22 1169 203 81 31 chr12 1798382 1798703 -142483786 + MER58B DNA MER1_type 4 340 -1 2309 94 0 7 chr12 1798793 1799091 -142483398 + AluSx SINE Alu 1 296 -16 1795 180 21 8 chr12 1799221 1799593 -142482896 - MLT1B LTR MaLR 0 390 14 359 309 158 23 chr12 1799697 1799962 -142482527 - L2 LINE L2 -25 3288 2988 785 323 35 25 chr12 1800032 1800431 -142482058 - L2 LINE L2 -445 2869 2467 1870 157 17 7 chr12 1801068 1801367 -142481122 - AluJo SINE Alu -10 302 1 1833 142 77 19 chr12 1801504 1801829 -142480660 + MER2 DNA MER2_type 1 344 0 567 143 0 4 chr12 1802084 1802308 -142480181 + AluSx SINE Alu 1 301 -8 1517 155 62 38 chr12 1802370 1802660 -142479829 + AluJo SINE Alu 3 299 -13 21 57 0 0 chr12 1802824 1802859 -142479630 + AT_rich Low_complexity Low_complexity 1 35 0 2324 102 7 0 chr12 1803073 1803378 -142479111 - AluY SINE Alu -4 307 1 1267 137 0 6 chr12 1803436 1803611 -142478878 - AluSx SINE Alu -138 174 1 2007 104 53 20 chr12 1803743 1804099 -142478390 - HSMAR2 DNA Mariner -1 1301 934 * 4680 152 6 4 chr12 1804096 1804919 -142477570 - HSMAR2 DNA Mariner -477 825 1 1489 215 64 83 chr12 1805068 1805212 -142477277 + L1M4 LINE L1 2246 2391 -3755 1802 130 123 0 chr12 1805212 1805488 -142477001 + AluSx SINE Alu 1 310 -2 1489 215 64 83 chr12 1805488 1805727 -142476762 + L1M4 LINE L1 2391 2633 -3513 1610 202 3 21 chr12 1805727 1806009 -142476480 + AluJo SINE Alu 6 282 -30 1489 215 64 83 chr12 1806009 1806037 -142476452 + L1M4 LINE L1 2633 2660 -3486 182 37 37 0 chr12 1806037 1806064 -142476425 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1489 215 64 83 chr12 1806064 1806398 -142476091 + L1M4 LINE L1 2660 2979 -3167 1080 261 29 36 chr12 1806549 1807214 -142475275 - L1M4b LINE L1 -4652 2307 1550 2538 65 0 0 chr12 1807214 1807522 -142474967 - AluY SINE Alu -3 308 1 618 184 6 81 chr12 1807526 1807700 -142474789 - L1M4 LINE L1 -1127 5019 4859 2756 150 38 32 chr12 1807702 1808255 -142474234 - MER21A LTR ERV1 0 931 376 549 161 153 0 chr12 1808346 1808483 -142474006 - MER21A LTR ERV1 -773 158 1 706 196 164 32 chr12 1808496 1808807 -142473682 - L1M4 LINE L1 -1300 4846 4495 1282 193 23 19 chr12 1808807 1809066 -142473423 - AluJo SINE Alu -10 302 43 404 234 66 51 chr12 1809070 1809251 -142473238 - L1M4 LINE L1 -1642 4504 4316 1741 168 0 36 chr12 1809251 1809560 -142472929 + AluJo SINE Alu 1 298 -14 404 234 66 51 chr12 1809560 1809634 -142472855 - L1M4 LINE L1 -1830 4316 4245 246 294 49 12 chr12 1809783 1809946 -142472543 - L1M4 LINE L1 -1869 4277 4109 1656 162 7 48 chr12 1810482 1810791 -142471698 - AluJo SINE Alu -13 299 4 2061 93 31 71 chr12 1810881 1811203 -142471286 - AluSc SINE Alu 0 309 1 980 188 6 6 chr12 1811203 1811372 -142471117 - AluSg/x SINE Alu -4 306 135 231 266 210 42 chr12 1811605 1811748 -142470741 + MIR SINE MIR 86 252 -10 21 0 0 0 chr12 1811803 1811824 -142470665 + AT_rich Low_complexity Low_complexity 1 21 0 245 295 90 0 chr12 1812662 1812740 -142469749 + MIR SINE MIR 124 208 -54 244 269 42 57 chr12 1812978 1813171 -142469318 - L1ME4a LINE L1 -157 5964 5775 474 65 0 0 chr12 1813662 1813724 -142468765 + (CTA)n Simple_repeat Simple_repeat 1 62 0 1836 106 76 0 chr12 1813724 1813988 -142468501 - AluSx SINE Alu -28 284 1 2104 116 7 7 chr12 1814056 1814350 -142468139 - AluSc SINE Alu -15 294 1 366 268 121 17 chr12 1814716 1814947 -142467542 - MER112 DNA MER1_type 0 260 6 300 221 0 29 chr12 1814965 1815033 -142467456 - L2 LINE L2 -335 2978 2913 26 23 0 23 chr12 1815112 1815135 -142467354 + AT_rich Low_complexity Low_complexity 1 24 -19 2241 100 3 0 chr12 1815135 1815424 -142467065 - AluSx SINE Alu -22 290 1 26 23 0 23 chr12 1815424 1815444 -142467045 + AT_rich Low_complexity Low_complexity 24 43 0 1165 256 150 34 chr12 1815444 1815998 -142466491 - L2 LINE L2 -407 2907 2290 329 305 12 0 chr12 1817361 1817443 -142465046 - MIR3 SINE MIR -4 204 122 286 294 124 41 chr12 1817807 1817997 -142464492 - MIR SINE MIR -53 209 3 234 336 133 18 chr12 1818598 1818711 -142463778 + MER5A DNA MER1_type 60 185 -4 2044 121 0 4 chr12 1818719 1819000 -142463489 + AluSg SINE Alu 1 280 -30 235 0 57 0 chr12 1819004 1819039 -142463450 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 38 61 0 0 chr12 1819097 1819163 -142463326 + AT_rich Low_complexity Low_complexity 1 66 0 3561 175 29 7 chr12 1819296 1819674 -142462815 - L1MB8 LINE L1 -12 6166 5763 2157 184 65 50 chr12 1819674 1820216 -142462273 + MER44D DNA MER2_type 1 605 0 3561 175 29 7 chr12 1820216 1820557 -142461932 - L1MB8 LINE L1 -415 5763 5431 967 328 31 13 chr12 1820707 1821178 -142461311 + L2 LINE L2 2553 3038 -234 39 60 0 0 chr12 1821266 1821333 -142461156 + AT_rich Low_complexity Low_complexity 1 67 0 308 312 58 7 chr12 1821620 1821758 -142460731 - MIR SINE MIR 0 262 118 231 233 20 42 chr12 1822162 1822249 -142460240 + MER5A DNA MER1_type 87 189 0 439 214 53 46 chr12 1822338 1822469 -142460020 + MIR SINE MIR 123 254 -8 2058 143 0 3 chr12 1822670 1822964 -142459525 + AluJo SINE Alu 1 293 -19 452 290 8 30 chr12 1823032 1823163 -142459326 + MIR3 SINE MIR 45 172 -36 288 0 0 0 chr12 1823533 1823565 -142458924 + (CA)n Simple_repeat Simple_repeat 2 33 0 1482 251 81 21 chr12 1823569 1824048 -142458441 - L1ME3A LINE L1 -44 6126 5619 362 316 72 0 chr12 1824393 1824545 -142457944 + MIR SINE MIR 100 262 0 214 326 0 0 chr12 1825026 1825075 -142457414 - L2 LINE L2 -86 3186 3138 225 324 70 0 chr12 1825151 1825222 -142457267 - L2 LINE L2 -275 2997 2922 2495 75 7 3 chr12 1825962 1826269 -142456220 + AluSq SINE Alu 1 308 -5 576 282 68 37 chr12 1826581 1827071 -142455418 - MER110 LTR ERV1 0 468 1 1960 118 35 3 chr12 1828527 1828816 -142453673 - AluSq SINE Alu -15 298 1 1759 121 4 19 chr12 1828895 1829152 -142453337 - AluJb SINE Alu -15 297 45 26 30 0 0 chr12 1829427 1829460 -142453029 + AT_rich Low_complexity Low_complexity 1 33 0 527 108 151 58 chr12 1829869 1830008 -142452481 + MER106A DNA MER1_type 40 191 -45 1385 128 18 154 chr12 1830016 1830353 -142452136 + AluJo SINE Alu 1 291 -11 387 273 142 34 chr12 1830863 1831039 -142451450 - MIR3 SINE MIR 0 208 14 442 305 51 15 chr12 1831191 1831388 -142451101 + MIR SINE MIR 49 252 -10 2265 86 20 13 chr12 1833674 1833977 -142448512 - AluSc SINE Alu -4 305 1 1136 60 0 0 chr12 1833977 1834110 -142448379 - AluSc SINE Alu -176 133 1 247 306 121 34 chr12 1835798 1836020 -142446469 - MIR SINE MIR -12 250 11 2081 94 87 3 chr12 1836348 1836636 -142445853 - AluSp SINE Alu 0 313 2 4066 173 64 15 chr12 1837440 1838594 -142443895 + L1MB7 LINE L1 4886 6103 -81 22 0 0 0 chr12 1839718 1839740 -142442749 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 1840444 1840466 -142442023 + AT_rich Low_complexity Low_complexity 1 22 0 381 262 81 12 chr12 1841539 1841711 -142440778 + MER112 DNA MER1_type 66 249 -11 820 140 104 30 chr12 1841908 1842111 -142440378 - AluSg/x SINE Alu 0 349 135 1622 118 4 0 chr12 1842374 1842602 -142439887 - AluSq SINE Alu -13 300 72 194 364 0 15 chr12 1843106 1843172 -142439317 + MIR3 SINE MIR 4 68 -140 840 257 25 33 chr12 1843202 1843447 -142439042 - MIR SINE MIR 0 262 20 347 310 0 0 chr12 1843456 1843543 -142438946 + MIR3 SINE MIR 95 181 -27 818 148 0 95 chr12 1847918 1848087 -142434402 + Tigger3(Golem) DNA MER2_type 2884 3036 0 537 60 0 0 chr12 1848102 1848169 -142434320 + Alu SINE Alu 5 71 -239 423 243 133 46 chr12 1848189 1848407 -142434082 - L1 LINE L1 -1713 4433 4197 327 233 0 36 chr12 1848459 1848558 -142433931 - MIR SINE MIR -61 147 99 2205 95 7 3 chr12 1848980 1849274 -142433215 + AluSg SINE Alu 1 295 -15 184 212 0 0 chr12 1849389 1849422 -142433067 - L3b LINE CR1 -68 1515 1483 215 289 124 29 chr12 1849712 1849865 -142432624 + MIR SINE MIR 33 203 -5 292 233 27 14 chr12 1850952 1851025 -142431464 - MIR SINE MIR -13 249 176 378 209 70 12 chr12 1851057 1851143 -142431346 + MIR SINE MIR 113 203 -59 244 224 79 26 chr12 1851187 1851263 -142431226 + MIR SINE MIR 102 181 -81 1317 229 98 14 chr12 1853324 1854008 -142428481 - MER21B LTR ERV1 -71 792 16 298 165 39 107 chr12 1854011 1854114 -142428375 - MER21B LTR ERV1 -767 96 1 362 230 46 0 chr12 1854995 1855082 -142427407 + MER94 DNA DNA 23 113 -21 396 277 96 12 chr12 1855334 1855500 -142426989 - MIR SINE MIR -60 202 23 188 108 0 27 chr12 1860623 1860660 -142421829 + (GA)n Simple_repeat Simple_repeat 1 36 0 405 0 0 0 chr12 1860990 1861035 -142421454 + (TG)n Simple_repeat Simple_repeat 2 46 0 214 277 266 71 chr12 1861699 1861966 -142420523 + L2 LINE L2 2944 3262 -10 387 0 0 0 chr12 1863096 1863139 -142419350 + (TG)n Simple_repeat Simple_repeat 2 44 0 521 257 130 16 chr12 1863536 1863789 -142418700 + MLT1J LTR MaLR 28 309 -202 593 224 55 12 chr12 1865652 1865817 -142416672 - MER5A DNA MER1_type -4 185 14 880 238 112 59 chr12 1865947 1866455 -142416034 + MLT1F LTR MaLR 2 536 -6 205 268 0 18 chr12 1866626 1866682 -142415807 - L2 LINE L2 -5 3267 3213 1099 236 28 8 chr12 1867235 1867489 -142415000 + MER58 DNA MER1_type 1 259 -2161 190 296 214 0 chr12 1868305 1868403 -142414086 - MIR3 SINE MIR -38 170 52 400 232 42 18 chr12 1869634 1869802 -142412687 + (TG)n Simple_repeat Simple_repeat 1 172 0 387 289 95 40 chr12 1871524 1871748 -142410741 - MIR SINE MIR 0 262 18 759 199 130 0 chr12 1872187 1872348 -142410141 - MER5A DNA MER1_type -3 186 5 963 214 5 0 chr12 1872365 1872561 -142409928 + MER3 DNA MER1_type 10 206 -3 197 211 0 0 chr12 1872577 1872615 -142409874 - MIR SINE MIR -63 145 108 196 237 0 0 chr12 1873167 1873205 -142409284 - MIR3 SINE MIR -4 204 167 255 176 0 20 chr12 1873414 1873465 -142409024 - LTR12 LTR ERV1 -614 100 51 225 180 0 40 chr12 1873465 1873515 -142408974 - LTR30 LTR ERV1 -674 48 1 843 272 201 21 chr12 1873518 1873859 -142408630 + L2 LINE L2 2354 2632 -681 2207 137 0 7 chr12 1873859 1874166 -142408323 - AluSx SINE Alu -7 305 1 843 272 201 21 chr12 1874166 1874615 -142407874 + L2 LINE L2 2632 3303 -10 257 327 91 0 chr12 1874779 1874889 -142407600 + L3b LINE CR1 1291 1410 -173 209 169 0 92 chr12 1875452 1875517 -142406972 + CT-rich Low_complexity Low_complexity 1 59 0 488 265 0 6 chr12 1875719 1875900 -142406589 + (CA)n Simple_repeat Simple_repeat 1 180 0 362 316 37 42 chr12 1876136 1876326 -142406163 - MIR3 SINE MIR 0 208 20 10894 35 45 5 chr12 1876436 1877760 -142404729 + SVA Other Other 9 1384 -2 1657 24 0 28 chr12 1877775 1877986 -142404503 + SVA Other Other 1182 1386 0 221 179 0 18 chr12 1879493 1879549 -142402940 + CT-rich Low_complexity Low_complexity 4 58 0 467 337 51 6 chr12 1882899 1883074 -142399415 + MIR SINE MIR 21 203 -59 507 228 144 0 chr12 1883206 1883360 -142399129 - MER5A DNA MER1_type -9 180 1 212 296 14 28 chr12 1884788 1884859 -142397630 + MIR SINE MIR 46 115 -147 294 340 28 9 chr12 1885243 1885349 -142397140 - MIR SINE MIR -66 196 89 191 300 114 0 chr12 1887705 1887775 -142394714 - MIR3 SINE MIR -11 197 120 796 301 22 6 chr12 1891144 1891383 -142391106 + MIR SINE MIR 15 248 -14 195 373 0 0 chr12 1891432 1891491 -142390998 + L2 LINE L2 3255 3313 0 313 292 152 64 chr12 1891684 1891855 -142390634 - MIR SINE MIR 0 262 77 282 345 0 0 chr12 1892968 1893052 -142389437 + MIR SINE MIR 128 211 -51 219 36 0 0 chr12 1894397 1894425 -142388064 + (CA)n Simple_repeat Simple_repeat 2 29 0 470 371 108 0 chr12 1898459 1898672 -142383817 + MIR SINE MIR 8 243 -19 379 313 44 52 chr12 1898805 1899054 -142383435 + MIR SINE MIR 2 248 -14 290 372 0 0 chr12 1899060 1899154 -142383335 - MER5A DNA MER1_type -84 105 12 181 259 35 17 chr12 1899463 1899521 -142382968 + MIR SINE MIR 82 140 -68 598 253 25 31 chr12 1901930 1902092 -142380397 + MIR SINE MIR 46 206 -56 191 395 37 9 chr12 1902543 1902652 -142379837 + MIR3 SINE MIR 65 176 -32 184 98 24 24 chr12 1904351 1904392 -142378097 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 911 188 72 19 chr12 1904742 1904950 -142377539 - MER20 DNA MER1_type 0 219 1 238 286 133 10 chr12 1906547 1906645 -142375844 + MER5B DNA MER1_type 40 149 -29 1812 298 86 66 chr12 1906652 1907014 -142375475 - L1MC5 LINE L1 -61 7900 7547 995 145 0 6 chr12 1907014 1907173 -142375316 - L1MB8 LINE L1 -11 6167 6010 1812 298 86 66 chr12 1907173 1907737 -142374752 - L1MC5 LINE L1 -414 7547 6996 620 200 17 0 chr12 1907737 1907879 -142374610 - FLAM_C SINE Alu 0 145 2 1812 298 86 66 chr12 1907879 1909597 -142372892 - L1MC5 LINE L1 -965 6996 5313 1968 47 115 36 chr12 1909597 1909875 -142372614 + AluY SINE Alu 1 300 -11 1334 221 14 14 chr12 1909876 1910157 -142372332 - AluJb SINE Alu -31 281 1 1812 298 86 66 chr12 1910157 1910617 -142371872 - L1MC5 LINE L1 -2648 5313 4864 288 53 0 0 chr12 1910617 1910655 -142371834 + (TG)n Simple_repeat Simple_repeat 2 39 0 1812 298 86 66 chr12 1910655 1911303 -142371186 - L1MC5 LINE L1 -3097 4864 4026 827 137 0 8 chr12 1911362 1911486 -142371003 + FLAM_C SINE Alu 1 123 -20 377 248 30 20 chr12 1911488 1911589 -142370900 - L1MC5 LINE L1 -2191 3955 3854 832 293 9 9 chr12 1911751 1911976 -142370513 + MIR SINE MIR 6 230 -32 246 284 0 0 chr12 1912364 1912438 -142370051 - L1M4 LINE L1 -1560 4586 4513 280 386 0 15 chr12 1913138 1913270 -142369219 + MIR3 SINE MIR 76 205 -3 2081 142 0 0 chr12 1913377 1913680 -142368809 - AluSx SINE Alu -9 303 1 768 293 40 81 chr12 1913692 1913827 -142368662 + L2 LINE L2 2902 3041 -272 877 119 0 35 chr12 1913827 1913970 -142368519 - L1MB5 LINE L1 -8 6166 6029 768 293 40 81 chr12 1913970 1914264 -142368225 + L2 LINE L2 3041 3313 0 230 306 74 8 chr12 1914540 1914661 -142367828 - MIR3 SINE MIR -14 194 66 230 314 105 42 chr12 1915358 1915549 -142366940 + L2 LINE L2 2935 3137 -135 283 279 158 42 chr12 1916353 1916518 -142365971 - L2 LINE L2 -585 2729 2546 1464 238 93 12 chr12 1916741 1917170 -142365319 + MLT1C LTR MaLR 4 467 0 444 250 0 0 chr12 1918027 1918123 -142364366 - MER5B DNA MER1_type -5 173 78 1104 143 19 56 chr12 1918123 1918339 -142364150 + AluJo SINE Alu 83 290 -22 326 263 12 12 chr12 1918340 1918420 -142364069 - MER5B DNA MER1_type -95 83 4 494 252 29 58 chr12 1918543 1918749 -142363740 - MIR SINE MIR -41 221 22 398 299 0 0 chr12 1918889 1918976 -142363513 - MIR SINE MIR -162 100 14 504 192 151 7 chr12 1919413 1919559 -142362930 + MER3 DNA MER1_type 41 207 -2 241 133 67 0 chr12 1919527 1919572 -142362917 - MER3 DNA MER1_type -125 84 37 * 454 331 96 0 chr12 1919821 1919987 -142362502 + MIR SINE MIR 3 184 -78 2291 109 0 3 chr12 1920404 1920717 -142361772 - AluSx SINE Alu 0 312 1 2348 220 67 18 chr12 1920748 1921397 -142361092 - L1ME2 LINE L1 -36 6062 5447 1572 143 87 4 chr12 1921397 1921687 -142360802 - AluSx SINE Alu 0 312 1 2348 220 67 18 chr12 1921687 1922687 -142359802 - L1ME2 LINE L1 -651 5447 4291 1315 268 60 2 chr12 1924783 1925301 -142357188 - L1ME2 LINE L1 -1779 4301 3737 1541 293 60 36 chr12 1925303 1925591 -142356898 - L1ME2 LINE L1 -4452 1809 1529 1927 133 3 38 chr12 1925591 1925906 -142356583 - AluJo SINE Alu -8 304 1 1541 293 60 36 chr12 1925906 1926522 -142355967 - L1ME2 LINE L1 -4732 1529 884 4825 147 53 95 chr12 1926522 1927542 -142354947 + L1MA9 LINE L1 5108 6170 -142 189 0 0 0 chr12 1927542 1927563 -142354926 + (TATTG)n Simple_repeat Simple_repeat 4 24 0 4825 147 53 95 chr12 1927563 1927707 -142354782 + L1MA9 LINE L1 6170 6241 -71 1804 159 39 9 chr12 1927707 1928041 -142354448 - MER2 DNA MER2_type 0 344 1 4825 147 53 95 chr12 1928041 1928074 -142354415 + L1MA9 LINE L1 6241 6274 -38 1520 287 55 25 chr12 1928118 1928755 -142353734 + MLT2F LTR ERVL 1 656 -7 301 252 140 0 chr12 1928756 1928863 -142353626 - L1ME2 LINE L1 -5240 830 709 1015 276 54 27 chr12 1929249 1929654 -142352835 - L1ME2 LINE L1 -5617 453 38 461 272 27 15 chr12 1930007 1930347 -142352142 + (TG)n Simple_repeat Simple_repeat 1 344 0 227 253 14 14 chr12 1930426 1930572 -142351917 + (TG)n Simple_repeat Simple_repeat 2 147 0 258 324 11 39 chr12 1930589 1930771 -142351718 + (TG)n Simple_repeat Simple_repeat 1 177 0 511 240 99 9 chr12 1931932 1932123 -142350366 + MIR SINE MIR 23 224 -38 2008 306 136 16 chr12 1934445 1935341 -142347148 - L3 LINE CR1 -34 1543 540 189 319 56 14 chr12 1935399 1935471 -142347018 - L3 LINE CR1 -1150 427 353 192 329 13 13 chr12 1937064 1937143 -142345346 + L2 LINE L2 3142 3220 -93 235 236 106 24 chr12 1937673 1937796 -142344693 - MIR3 SINE MIR -72 136 4 306 298 40 40 chr12 1938559 1938710 -142343779 - MER5B DNA MER1_type -27 151 1 500 221 134 87 chr12 1940880 1941282 -142341207 + MLT1J LTR MaLR 78 498 -13 269 277 170 11 chr12 1942103 1942374 -142340115 + LTR16A LTR ERVL 130 443 -7 218 122 41 41 chr12 1942589 1942638 -142339851 + L2 LINE L2 2924 2972 -300 303 301 45 38 chr12 1942753 1942886 -142339603 + L2 LINE L2 3136 3269 -3 204 359 65 0 chr12 1942919 1943011 -142339478 + L3b LINE CR1 1258 1355 -228 374 260 103 63 chr12 1947289 1947639 -142334850 + L1ME LINE L1 600 963 -5156 699 310 42 40 chr12 1947711 1948279 -142334210 + L1ME LINE L1 1098 1666 -4463 21 0 0 0 chr12 1948450 1948471 -142334018 + AT_rich Low_complexity Low_complexity 1 21 0 625 176 17 34 chr12 1948471 1948590 -142333899 - FLAM_A SINE Alu -14 128 12 17781 163 25 23 chr12 1948820 1952235 -142330254 + L1MA4A LINE L1 7 3414 -3591 1797 117 0 11 chr12 1952235 1952499 -142329990 + AluSg1 SINE Alu 26 286 -23 17781 163 25 23 chr12 1952499 1954620 -142327869 + L1MA4A LINE L1 3414 5529 -1476 1435 191 7 24 chr12 1954620 1954913 -142327576 - AluJo SINE Alu -24 288 1 17781 163 25 23 chr12 1954913 1955363 -142327126 + L1MA4A LINE L1 5529 5977 -1028 207 0 0 0 chr12 1955363 1955386 -142327103 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 17781 163 25 23 chr12 1955386 1955581 -142326908 + L1MA4A LINE L1 5977 6170 -835 441 0 0 0 chr12 1955581 1955630 -142326859 + (CA)n Simple_repeat Simple_repeat 2 50 0 17781 163 25 23 chr12 1955630 1956020 -142326469 + L1MA4A LINE L1 6170 6608 -397 511 115 13 0 chr12 1956024 1956102 -142326387 + AluJ/FLAM SINE Alu 2 80 -232 2636 119 15 10 chr12 1956102 1956506 -142325983 + L1MA4A LINE L1 6599 7004 -1 477 289 71 16 chr12 1956508 1956761 -142325728 + L1ME LINE L1 2093 2359 -3770 670 279 32 42 chr12 1956766 1957174 -142325315 + L1ME LINE L1 2548 2951 -3178 * 1079 179 94 69 chr12 1957163 1957348 -142325141 + L1MB3 LINE L1 5101 5280 -903 207 0 0 0 chr12 1957348 1957371 -142325118 + (CAA)n Simple_repeat Simple_repeat 1 23 0 1079 179 94 69 chr12 1957371 1957618 -142324871 + L1MB3 LINE L1 5280 5532 -651 240 35 0 0 chr12 1957652 1957681 -142324808 + (TG)n Simple_repeat Simple_repeat 2 30 0 2114 144 22 27 chr12 1957691 1958094 -142324395 + L1MB3 LINE L1 5781 6181 -2 1326 286 78 14 chr12 1958119 1958951 -142323538 + L1ME LINE L1 2943 3827 -2302 906 272 22 31 chr12 1958960 1959112 -142323377 + L1ME LINE L1 5303 5455 -690 1743 155 14 30 chr12 1959112 1959409 -142323080 - AluJo SINE Alu -20 292 1 906 272 22 31 chr12 1959409 1959579 -142322910 + L1ME LINE L1 5455 5622 -523 15839 151 11 11 chr12 1959584 1963499 -142318990 + L1MA3 LINE L1 2393 6305 0 2735 101 24 13 chr12 1963499 1963953 -142318536 + L1MB5 LINE L1 1999 2457 -3927 * 6164 220 40 5 chr12 1963941 1965470 -142317019 + L1MB5 LINE L1 3975 5557 -825 201 309 18 0 chr12 1965613 1965668 -142316821 + L3 LINE CR1 1265 1320 -257 222 37 0 0 chr12 1966201 1966228 -142316261 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 2334 32 0 11 chr12 1968149 1968466 -142314023 - AluY SINE Alu 0 316 3 204 317 173 0 chr12 1968682 1968786 -142313703 + L2 LINE L2 3151 3272 0 645 236 28 0 chr12 1968988 1969132 -142313357 + L1MC1 LINE L1 5583 5730 -444 1762 176 176 2 chr12 1969138 1969536 -142312953 + L1MC1 LINE L1 5865 6331 -2 2352 184 14 0 chr12 1969552 1969992 -142312497 + L1MB5 LINE L1 5957 6402 -8 2014 96 24 3 chr12 1969996 1970288 -142312201 - AluSc SINE Alu -10 299 2 230 295 259 14 chr12 1970367 1970506 -142311983 + MIR3 SINE MIR 34 206 -2 310 270 36 36 chr12 1972353 1972490 -142309999 - MIR3 SINE MIR -68 140 4 293 267 168 0 chr12 1972728 1972829 -142309660 + MIR SINE MIR 25 142 -120 344 272 61 0 chr12 1973650 1973764 -142308725 + MIR3 SINE MIR 71 191 -17 257 358 0 8 chr12 1973928 1974062 -142308427 + (CA)n Simple_repeat Simple_repeat 2 134 0 206 207 17 0 chr12 1974076 1974134 -142308355 + (CA)n Simple_repeat Simple_repeat 1 59 0 199 225 0 0 chr12 1974828 1974868 -142307621 - L2 LINE L2 -6 3307 3268 188 314 89 8 chr12 1974976 1975100 -142307389 - L2 LINE L2 -221 3051 2918 349 161 0 0 chr12 1975253 1975309 -142307180 + MER91B DNA MER1_type 2 57 -133 581 272 38 5 chr12 1976086 1976270 -142306219 + MIR SINE MIR 39 228 -34 3606 246 73 23 chr12 1978104 1979158 -142303331 + MER69 DNA AcHobo 10 1116 -1410 526 231 12 99 chr12 1979165 1979317 -142303172 + MER69 DNA AcHobo 2276 2401 -125 2289 199 7 32 chr12 1979317 1979854 -142302635 - L1MB3 LINE L1 -2 6181 5658 526 231 12 99 chr12 1979854 1979944 -142302545 + MER69 DNA AcHobo 2401 2497 -29 565 246 55 27 chr12 1980269 1980489 -142302000 + L2 LINE L2 2592 2817 -497 256 196 0 0 chr12 1980504 1980560 -142301929 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980598 1980654 -142301835 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980692 1980748 -142301741 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980786 1980842 -142301647 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980880 1980936 -142301553 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980974 1981030 -142301459 - MER69 DNA AcHobo -128 2398 2343 243 293 85 38 chr12 1981226 1981438 -142301051 - LTR33 LTR ERVL -7 514 293 429 254 0 42 chr12 1981686 1981828 -142300661 + L1MB7 LINE L1 6044 6179 -5 239 202 24 36 chr12 1981971 1982055 -142300434 + L2 LINE L2 3181 3263 -50 2155 161 68 68 chr12 1982317 1982821 -142299668 + L1MB3 LINE L1 5680 6183 0 2434 42 0 26 chr12 1983031 1983338 -142299151 - AluY SINE Alu -12 299 1 315 0 0 0 chr12 1983770 1983805 -142298684 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 390 21 0 0 chr12 1983804 1983851 -142298638 + (GA)n Simple_repeat Simple_repeat 1 47 0 464 225 92 35 chr12 1984627 1984800 -142297689 + MIR3 SINE MIR 15 197 -11 281 313 179 0 chr12 1985061 1985173 -142297316 + MIR SINE MIR 23 154 -108 568 257 145 36 chr12 1985175 1985451 -142297038 - MLT1L LTR MaLR 0 615 310 268 226 0 0 chr12 1985466 1985519 -142296970 - MLT1J LTR MaLR -348 163 111 238 284 15 0 chr12 1985638 1985705 -142296784 + MIR SINE MIR 176 243 -19 277 331 99 33 chr12 1985949 1986100 -142296389 + MIR3 SINE MIR 34 194 -14 211 211 0 0 chr12 1986192 1986230 -142296259 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 398 37 19 chr12 1987729 1987890 -142294599 - MIR3 SINE MIR -8 200 37 264 261 185 11 chr12 1988201 1988293 -142294196 + MIR SINE MIR 63 170 -92 956 145 6 11 chr12 1988710 1989076 -142293413 + GA-rich Low_complexity Low_complexity 1 364 0 203 329 86 26 chr12 1989341 1989493 -142292996 - L2 LINE L2 -11 3261 3101 585 280 56 13 chr12 1989680 1989912 -142292577 - MLT1L LTR MaLR -14 601 360 195 250 78 16 chr12 1989913 1989977 -142292512 + MER5A DNA MER1_type 65 132 -57 983 139 36 0 chr12 1990469 1990635 -142291854 + AluJo SINE Alu 121 292 -20 583 243 46 92 chr12 1990685 1990989 -142291500 + L1ME3 LINE L1 5863 6152 -10 351 253 12 6 chr12 1991863 1992029 -142290460 + (TG)n Simple_repeat Simple_repeat 2 168 0 251 213 19 19 chr12 1992052 1992160 -142290329 + (TG)n Simple_repeat Simple_repeat 2 109 0 252 131 0 98 chr12 1992160 1992221 -142290268 + MER4-int LTR ERV1 1111 1165 -5433 262 368 56 7 chr12 1992535 1992679 -142289810 + MIR3 SINE MIR 47 197 -11 311 280 136 0 chr12 1993328 1993446 -142289043 - MER94 DNA DNA 0 134 1 21 0 0 0 chr12 1993798 1993819 -142288670 + AT_rich Low_complexity Low_complexity 1 21 0 186 191 0 0 chr12 1994164 1994211 -142288278 + (CA)n Simple_repeat Simple_repeat 1 47 0 335 323 179 12 chr12 1994215 1994472 -142288017 + L2 LINE L2 2914 3213 -59 191 189 27 0 chr12 1998341 1998378 -142284111 + L2 LINE L2 3214 3251 -21 1052 80 0 0 chr12 1999429 1999567 -142282922 - L1P LINE L1 -4166 1980 1843 1443 76 0 0 chr12 1999591 1999776 -142282713 - AluY SINE Alu -126 185 1 5475 135 28 35 chr12 1999779 2000762 -142281727 - L1P LINE L1 -4288 1858 883 24882 80 7 32 chr12 2000763 2004999 -142277490 + L1PA8A LINE L1 1987 6113 -18 1736 154 17 10 chr12 2005663 2005962 -142276527 - AluJo SINE Alu -4 308 8 777 91 0 27 chr12 2006829 2006939 -142275550 - FLAM_C SINE Alu -35 108 2 525 221 181 38 chr12 2007261 2007484 -142275005 + MIR SINE MIR 20 261 -1 1561 181 17 17 chr12 2009628 2009921 -142272568 - AluJo SINE Alu -19 293 1 2106 100 0 10 chr12 2009964 2010264 -142272225 + AluSq SINE Alu 1 297 -16 407 267 67 22 chr12 2010649 2010784 -142271705 + L2 LINE L2 3173 3313 0 1181 173 4 9 chr12 2011136 2011362 -142271127 - AluJo SINE Alu -2 310 86 261 0 0 0 chr12 2012132 2012161 -142270328 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1752 174 6 3 chr12 2012875 2013186 -142269303 + AluJo SINE Alu 1 312 0 1696 160 24 3 chr12 2013832 2014125 -142268364 - AluJo SINE Alu -7 305 7 436 304 16 47 chr12 2016321 2016512 -142265977 + L1ME4a LINE L1 5935 6119 -2 409 232 50 0 chr12 2016911 2017010 -142265479 + L1 LINE L1 5002 5105 -1041 289 231 31 0 chr12 2017064 2017129 -142265360 + L1 LINE L1 5027 5093 -1053 345 211 40 0 chr12 2017129 2017205 -142265284 + L1 LINE L1 5027 5105 -1041 266 224 35 0 chr12 2017206 2017264 -142265225 + L1 LINE L1 5039 5098 -1048 * 314 237 40 0 chr12 2017259 2017335 -142265154 + L1 LINE L1 5027 5105 -1041 265 234 47 0 chr12 2017336 2017400 -142265089 + L1 LINE L1 5039 5105 -1041 * 310 237 40 0 chr12 2017389 2017465 -142265024 + L1 LINE L1 5027 5105 -1041 283 250 40 0 chr12 2017454 2017530 -142264959 + L1 LINE L1 5027 5105 -1041 * 326 224 40 0 chr12 2017519 2017595 -142264894 + L1 LINE L1 5027 5105 -1041 270 263 40 0 chr12 2017584 2017660 -142264829 + L1 LINE L1 5027 5105 -1041 * 248 276 40 0 chr12 2017649 2017725 -142264764 + L1 LINE L1 5027 5105 -1041 * 270 263 40 0 chr12 2017714 2017790 -142264699 + L1 LINE L1 5027 5105 -1041 * 276 246 31 0 chr12 2017779 2017844 -142264645 + L1 LINE L1 5027 5093 -1053 306 237 40 0 chr12 2017844 2017920 -142264569 + L1 LINE L1 5027 5105 -1041 239 226 38 0 chr12 2017921 2017974 -142264515 + L1 LINE L1 5039 5093 -1053 310 237 40 0 chr12 2017974 2018050 -142264439 + L1 LINE L1 5027 5105 -1041 6139 157 16 17 chr12 2018104 2018652 -142263837 + L1MA8 LINE L1 5027 5574 -717 2322 74 0 3 chr12 2018652 2018951 -142263538 + AluY SINE Alu 1 298 -13 6139 157 16 17 chr12 2018951 2019659 -142262830 + L1MA8 LINE L1 5574 6289 -2 323 349 60 13 chr12 2019678 2019827 -142262662 - L3 LINE CR1 -1 1576 1421 200 410 19 32 chr12 2020660 2020816 -142261673 - L2 LINE L2 -192 3080 2927 385 199 108 19 chr12 2020895 2021042 -142261447 + MER88 LTR ERVL 79 206 -258 * 1725 240 75 10 chr12 2020938 2021421 -142261068 - MER74B LTR ERVL -74 548 35 290 342 51 8 chr12 2021755 2021872 -142260617 - L2 LINE L2 -1 3271 3150 401 245 46 94 chr12 2021919 2022232 -142260257 - L1MC5 LINE L1 -393 7415 7219 * 806 271 151 41 chr12 2022201 2022891 -142259598 - L1MC4 LINE L1 -742 7219 6557 324 247 132 50 chr12 2023250 2023432 -142259057 - L1M4 LINE L1 -812 5334 5138 381 296 36 32 chr12 2023433 2023653 -142258836 - L1 LINE L1 -1032 5114 4894 295 295 6 12 chr12 2024065 2024231 -142258258 - L1 LINE L1 -1602 4544 4380 24 77 0 0 chr12 2024374 2024426 -142258063 + AT_rich Low_complexity Low_complexity 1 52 0 902 216 31 53 chr12 2024862 2025089 -142257400 + MER58A DNA MER1_type 2 223 -1 1848 112 56 11 chr12 2027057 2027343 -142255146 + AluSq SINE Alu 1 299 -14 23 0 0 0 chr12 2027716 2027739 -142254750 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 2028520 2028540 -142253949 + (T)n Simple_repeat Simple_repeat 1 20 0 314 322 17 0 chr12 2031474 2031589 -142250900 - MIR3 SINE MIR -5 203 87 351 326 0 0 chr12 2031756 2031854 -142250635 + GA-rich Low_complexity Low_complexity 3 100 0 304 314 198 16 chr12 2033004 2033125 -142249364 + L2 LINE L2 3129 3271 -1 274 204 23 11 chr12 2035810 2035898 -142246591 + GA-rich Low_complexity Low_complexity 4 92 0 2672 215 34 33 chr12 2037505 2038006 -142244483 - L1ME2 LINE L1 -9 6549 6050 2033 96 0 14 chr12 2038006 2038286 -142244203 - AluSx SINE Alu -34 278 3 2126 110 10 0 chr12 2038287 2038586 -142243903 - AluSx SINE Alu -10 302 1 2672 215 34 33 chr12 2038586 2038818 -142243671 - L1ME2 LINE L1 -507 6051 5813 1616 224 53 13 chr12 2038826 2039282 -142243207 + L1ME2 LINE L1 5761 6234 -322 840 202 40 16 chr12 2039308 2039560 -142242929 - L1ME2 LINE L1 -745 5795 5538 22 70 0 0 chr12 2039938 2039981 -142242508 + AT_rich Low_complexity Low_complexity 1 43 0 256 361 82 25 chr12 2040544 2040666 -142241823 + L2 LINE L2 3123 3251 -21 201 323 87 52 chr12 2040737 2040966 -142241523 - L2 LINE L2 -213 3059 2823 5132 230 70 36 chr12 2041137 2041182 -142241307 - L1ME2 LINE L1 -2364 4176 4134 2676 153 32 0 chr12 2041182 2041654 -142240835 - L1MB3 LINE L1 -2 6181 5695 5132 230 70 36 chr12 2041654 2044749 -142237740 - L1ME2 LINE L1 -2406 4134 954 2437 66 3 10 chr12 2044783 2045087 -142237402 - AluY SINE Alu -9 302 1 243 287 56 19 chr12 2045200 2045308 -142237181 - L1ME2 LINE L1 -5632 898 787 244 289 48 32 chr12 2045696 2045882 -142236607 - L1ME2 LINE L1 -5883 647 59 657 263 129 51 chr12 2046400 2047066 -142235423 - HAL1 LINE L1 0 2507 1790 1314 259 35 20 chr12 2047081 2047428 -142235061 - MLT1I LTR MaLR 0 409 58 355 209 143 9 chr12 2047577 2047682 -142234807 - HAL1 LINE L1 -2388 119 1 774 174 0 0 chr12 2048077 2048198 -142234291 + FLAM_A SINE Alu 1 121 -12 514 163 0 22 chr12 2048224 2048316 -142234173 + FRAM SINE Alu 61 150 -26 218 238 50 28 chr12 2048325 2048407 -142234082 + GA-rich Low_complexity Low_complexity 5 72 0 2038 135 7 13 chr12 2048407 2048711 -142233778 + AluSx SINE Alu 1 302 -10 324 351 107 19 chr12 2049051 2049256 -142233233 + MIR SINE MIR 28 250 -12 278 266 55 37 chr12 2050195 2050304 -142232185 + MIR SINE MIR 108 218 -44 1008 180 112 52 chr12 2050346 2050651 -142231838 - MER33 DNA MER1_type 0 324 2 21 36 0 0 chr12 2050800 2050828 -142231661 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr12 2052602 2052632 -142229857 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr12 2052725 2052760 -142229729 + AT_rich Low_complexity Low_complexity 1 35 0 180 302 60 9 chr12 2054751 2054867 -142227622 + L2 LINE L2 2148 2269 -1045 248 297 126 50 chr12 2055337 2055494 -142226995 + L2 LINE L2 2866 3040 -232 1264 128 33 83 chr12 2055494 2055736 -142226753 + MER30 DNA MER1_type 1 230 0 248 297 126 50 chr12 2055736 2055760 -142226729 + L2 LINE L2 3040 3061 -211 2133 88 27 27 chr12 2056221 2056515 -142225974 + AluSg SINE Alu 1 294 -16 1197 151 11 0 chr12 2058021 2058207 -142224282 + MER5A DNA MER1_type 1 188 -1 1763 125 14 61 chr12 2058404 2058722 -142223767 + AluJo SINE Alu 1 304 0 2349 84 0 0 chr12 2059729 2060028 -142222461 + AluSq SINE Alu 1 299 -14 249 225 42 42 chr12 2060603 2060674 -142221815 - MER5B DNA MER1_type -21 157 87 616 158 31 8 chr12 2060781 2060908 -142221581 - MER20 DNA MER1_type -89 130 1 4294 184 34 58 chr12 2063860 2064993 -142217496 + Charlie1a DNA MER1_type 1 1106 -349 491 110 7 208 chr12 2065014 2065102 -142217387 + Charlie1a DNA MER1_type 1333 1379 -1382 2382 83 0 0 chr12 2065102 2065402 -142217087 + AluSg SINE Alu 1 300 -10 491 110 7 208 chr12 2065402 2065467 -142217022 + Charlie1a DNA MER1_type 1379 1455 0 379 225 0 0 chr12 2065844 2065924 -142216565 + MER112 DNA MER1_type 172 251 -9 193 273 18 0 chr12 2066726 2066781 -142215708 + L2 LINE L2 2919 2974 -298 1262 153 0 5 chr12 2067076 2067309 -142215180 - AluJo SINE Alu 0 316 85 236 167 0 0 chr12 2067317 2067365 -142215124 - Alu SINE Alu -170 132 85 277 261 14 43 chr12 2067444 2067513 -142214976 + L2 LINE L2 3194 3260 -12 201 308 0 0 chr12 2068971 2069049 -142213440 + (TTA)n Simple_repeat Simple_repeat 2 79 0 196 246 18 70 chr12 2069123 2069180 -142213309 - L3 LINE CR1 -130 1447 1394 2369 93 0 7 chr12 2069841 2070151 -142212338 + AluSq SINE Alu 1 308 -5 212 213 363 0 chr12 2070473 2070553 -142211936 + MIR3 SINE MIR 93 201 -7 1146 176 40 0 chr12 2071283 2071482 -142211007 + MER58A DNA MER1_type 4 210 -14 224 323 46 92 chr12 2071524 2071654 -142210835 - L2 LINE L2 -22 3250 3127 690 293 59 36 chr12 2072048 2072301 -142210188 + MIR SINE MIR 1 259 -3 636 329 12 0 chr12 2073398 2073562 -142208927 - L2 LINE L2 0 3272 3107 200 200 67 0 chr12 2074471 2074516 -142207973 - MIR3 SINE MIR -54 154 107 415 240 143 19 chr12 2074565 2074719 -142207770 + MER5B DNA MER1_type 6 178 0 511 290 124 11 chr12 2074743 2074929 -142207560 + MIR SINE MIR 43 249 -13 280 229 49 0 chr12 2074954 2075015 -142207474 - MIR3 SINE MIR -132 76 13 349 244 0 191 chr12 2075169 2075337 -142207152 - L2 LINE L2 -1 3271 3136 2361 90 3 3 chr12 2075399 2075700 -142206789 - AluSq SINE Alu -8 305 5 580 217 101 0 chr12 2075774 2075912 -142206577 - MER5B DNA MER1_type -26 152 1 215 298 156 14 chr12 2076010 2076151 -142206338 - L2 LINE L2 -530 2784 2624 355 189 27 0 chr12 2076951 2077025 -142205464 - MER58 DNA MER1_type -106 109 34 1626 231 2 33 chr12 2077040 2077464 -142205025 + MER63 DNA MER1_type 649 1059 -2 1919 161 13 7 chr12 2078154 2078464 -142204025 + AluJo SINE Alu 1 312 0 620 153 42 7 chr12 2078464 2078608 -142203881 + GA-rich Low_complexity Low_complexity 4 152 0 212 242 15 0 chr12 2078981 2079047 -142203442 + CT-rich Low_complexity Low_complexity 1 67 0 773 287 24 24 chr12 2079142 2079393 -142203096 - MIR SINE MIR 0 262 12 545 302 174 12 chr12 2079719 2079961 -142202528 - L3 LINE CR1 -8 1569 1289 439 219 57 49 chr12 2080173 2080296 -142202193 - MIR SINE MIR -108 154 31 1010 207 137 43 chr12 2080307 2080372 -142202117 - MLT1A1 LTR MaLR -5 360 303 2353 89 0 3 chr12 2080372 2080665 -142201824 + AluSq SINE Alu 2 293 -20 1010 207 137 43 chr12 2080665 2080928 -142201561 - MLT1A1 LTR MaLR -62 303 1 3187 155 11 71 chr12 2080932 2081438 -142201051 + MER6A DNA MER2_type 1 461 -404 1805 142 68 4 chr12 2081438 2081719 -142200770 - AluJo SINE Alu -13 299 1 3187 155 11 71 chr12 2081719 2081856 -142200633 + MER6A DNA MER2_type 461 605 0 810 222 66 0 chr12 2081921 2082088 -142200401 + MER45A DNA AcHobo 1 178 0 211 111 0 28 chr12 2082896 2082932 -142199557 + MIR SINE MIR 21 55 -153 540 217 217 11 chr12 2083323 2083636 -142198853 - MLT1J LTR MaLR -23 488 82 472 264 78 9 chr12 2087349 2087498 -142194991 - MIR3 SINE MIR -48 160 1 502 235 136 128 chr12 2087605 2087856 -142194633 + MIR SINE MIR 10 262 0 196 186 0 102 chr12 2088049 2088108 -142194381 - MIR SINE MIR -63 145 93 1775 185 46 0 chr12 2088245 2088596 -142193893 - L1MB5 LINE L1 0 6174 5808 269 273 30 0 chr12 2090619 2090685 -142191804 + MER5B DNA MER1_type 17 84 -94 396 82 0 0 chr12 2090942 2091003 -142191486 + (TG)n Simple_repeat Simple_repeat 2 62 0 262 0 53 0 chr12 2092608 2092646 -142189843 + (CAA)n Simple_repeat Simple_repeat 2 41 0 307 351 153 4 chr12 2092751 2093019 -142189470 + L3 LINE CR1 954 1261 -316 693 234 85 51 chr12 2093025 2093260 -142189229 - MIR SINE MIR 0 262 20 430 364 30 4 chr12 2093274 2093505 -142188984 + L3 LINE CR1 1268 1504 -73 243 275 150 33 chr12 2093689 2093809 -142188680 - L2 LINE L2 0 3313 3180 22 94 0 0 chr12 2094084 2094148 -142188341 + GC_rich Low_complexity Low_complexity 1 64 0 654 337 53 16 chr12 2094657 2094900 -142187589 - L3b LINE CR1 -7 1576 1325 2111 113 24 0 chr12 2095447 2095738 -142186751 - AluSg SINE Alu -12 298 1 685 214 151 0 chr12 2096718 2096877 -142185612 + MER5A DNA MER1_type 7 189 0 491 335 77 24 chr12 2098444 2098731 -142183758 - L2 LINE L2 0 3272 2971 325 319 126 28 chr12 2099558 2099740 -142182749 + L3b LINE CR1 1249 1448 -135 285 370 0 10 chr12 2099834 2099934 -142182555 - MIR SINE MIR -116 146 48 2539 71 0 0 chr12 2100242 2100550 -142181939 - AluY SINE Alu -3 308 1 2143 216 18 11 chr12 2100870 2101440 -142181049 - Charlie2 DNA MER1_type -18 2844 2271 488 272 37 49 chr12 2101534 2101780 -142180709 - Charlie2 DNA MER1_type -2461 321 79 544 335 50 30 chr12 2102243 2102604 -142179885 - MLT1I LTR MaLR -2 407 40 2948 13 0 0 chr12 2102614 2102929 -142179560 - AluYb8 SINE Alu -3 315 1 255 325 18 74 chr12 2104345 2104508 -142177981 + MIR3 SINE MIR 17 170 -38 1184 251 147 16 chr12 2104731 2105174 -142177315 + MLT1D LTR MaLR 5 505 0 236 333 70 18 chr12 2105345 2105459 -142177030 - MIR SINE MIR -48 214 95 319 302 88 25 chr12 2106060 2106219 -142176270 + MIR SINE MIR 12 180 -82 192 279 0 0 chr12 2106225 2106268 -142176221 + L2 LINE L2 3270 3312 -1 612 296 104 5 chr12 2106273 2106493 -142175996 - MIR SINE MIR -1 261 20 248 87 22 43 chr12 2106564 2106610 -142175879 - L2 LINE L2 -8 3305 3261 650 274 46 13 chr12 2106667 2107229 -142175260 - MLT2F LTR ERVL 0 663 1 189 0 0 0 chr12 2107827 2107848 -142174641 + (GAA)n Simple_repeat Simple_repeat 1 21 0 282 304 101 9 chr12 2107925 2108142 -142174347 - L1ME4a LINE L1 -117 6004 5768 830 238 39 15 chr12 2108146 2108352 -142174137 + MIR SINE MIR 14 224 -38 321 268 39 1 chr12 2108360 2108447 -142174042 - L1ME4a LINE L1 -347 5774 5684 195 302 79 0 chr12 2108508 2108571 -142173918 - L2 LINE L2 -2 3270 3203 872 240 39 31 chr12 2109197 2109451 -142173038 + MIR SINE MIR 7 262 0 2509 227 125 43 chr12 2109876 2110940 -142171549 - L2 LINE L2 0 3313 2146 217 230 48 36 chr12 2111466 2111631 -142170858 + (CGCGG)n Simple_repeat Simple_repeat 2 168 0 27 29 0 0 chr12 2111658 2111692 -142170797 + GC_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr12 2111725 2111761 -142170728 + GC_rich Low_complexity Low_complexity 1 36 0 22 80 0 0 chr12 2111776 2111826 -142170663 + GC_rich Low_complexity Low_complexity 1 50 0 224 0 40 80 chr12 2111868 2111918 -142170571 + (CGGG)n Simple_repeat Simple_repeat 1 48 0 31 44 0 0 chr12 2112002 2112047 -142170442 + GC_rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr12 2112146 2112189 -142170300 + GC_rich Low_complexity Low_complexity 1 43 0 23 114 0 0 chr12 2112648 2112762 -142169727 + GC_rich Low_complexity Low_complexity 1 114 0 32 114 0 0 chr12 2112932 2113090 -142169399 + GC_rich Low_complexity Low_complexity 1 158 0 504 59 0 0 chr12 2115145 2115213 -142167276 + (TG)n Simple_repeat Simple_repeat 2 69 0 194 227 67 53 chr12 2115463 2115538 -142166951 + L3 LINE CR1 115 190 -1387 225 247 173 0 chr12 2118667 2118748 -142163741 - MIR3 SINE MIR -6 202 108 257 274 0 74 chr12 2120111 2120206 -142162283 + MIR SINE MIR 124 211 -51 689 288 56 13 chr12 2121188 2121421 -142161068 - MIR SINE MIR 0 262 20 597 176 5 0 chr12 2121896 2122098 -142160391 - L1MB7 LINE L1 -1 6183 5945 2250 102 3 0 chr12 2122128 2122423 -142160066 - AluSc SINE Alu -13 296 1 1395 162 30 0 chr12 2122645 2122921 -142159568 - L1MB5 LINE L1 -298 5876 5589 205 343 53 91 chr12 2124410 2125107 -142157382 - L2 LINE L2 -2 3270 2599 345 125 0 0 chr12 2126424 2126480 -142156009 + (TG)n Simple_repeat Simple_repeat 2 57 0 1654 181 52 0 chr12 2128792 2129079 -142153410 - AluJo SINE Alu -10 302 1 470 289 93 29 chr12 2129358 2129823 -142152666 - L1MEd LINE L1 -746 1744 1226 707 181 14 12 chr12 2129825 2130097 -142152392 + CT-rich Low_complexity Low_complexity 1 272 0 378 120 0 0 chr12 2130115 2130190 -142152299 + (CCTG)n Simple_repeat Simple_repeat 2 76 0 1516 183 18 35 chr12 2130215 2130500 -142151989 - AluJb SINE Alu -32 280 1 500 256 67 41 chr12 2130505 2130774 -142151715 - L1MEd LINE L1 -4940 1179 904 215 222 14 42 chr12 2130936 2131008 -142151481 + MIR SINE MIR 147 216 -46 206 116 23 0 chr12 2131144 2131187 -142151302 + (TA)n Simple_repeat Simple_repeat 1 44 0 1971 143 0 3 chr12 2131187 2131474 -142151015 - AluSx SINE Alu -26 286 1 180 339 0 0 chr12 2131802 2131864 -142150625 - L2 LINE L2 -3 3310 3249 210 336 96 39 chr12 2131891 2131995 -142150494 - L2 LINE L2 -9 3263 3154 533 209 32 25 chr12 2132824 2132982 -142149507 + MER117 DNA MER1_type 5 163 -34 261 364 98 17 chr12 2133283 2133456 -142149033 - MIR SINE MIR 0 262 76 550 294 0 7 chr12 2134397 2134540 -142147949 - MIR SINE MIR -118 144 3 256 131 16 16 chr12 2135442 2135503 -142146986 + CT-rich Low_complexity Low_complexity 4 64 0 328 308 9 9 chr12 2136436 2136543 -142145946 - MIR SINE MIR 0 262 156 283 310 26 9 chr12 2136631 2136747 -142145742 + L1MEd LINE L1 265 382 -5737 1944 160 31 46 chr12 2136903 2136974 -142145515 + L1MB1 LINE L1 5716 5787 -381 1849 187 19 21 chr12 2136974 2137349 -142145140 + MLT1A2 LTR MaLR 1 374 0 1944 160 31 46 chr12 2137349 2137676 -142144813 + L1MB1 LINE L1 5787 6118 -50 5122 27 0 3 chr12 2137676 2138269 -142144220 + L1PA4 LINE L1 5565 6155 0 1944 160 31 46 chr12 2138269 2138283 -142144206 + L1MB1 LINE L1 6118 6131 -37 1864 171 30 22 chr12 2138283 2138645 -142143844 - MLT1A1 LTR MaLR 0 365 1 1944 160 31 46 chr12 2138645 2138684 -142143805 + L1MB1 LINE L1 6131 6168 0 619 278 70 67 chr12 2138810 2138953 -142143536 + L1MEd LINE L1 678 819 -1671 2239 135 0 3 chr12 2138953 2139265 -142143224 + AluSx SINE Alu 1 311 -1 619 278 70 67 chr12 2139265 2139294 -142143195 + L1MEd LINE L1 819 846 -1644 2508 93 0 0 chr12 2139294 2139605 -142142884 + AluY SINE Alu 1 311 0 619 278 70 67 chr12 2139605 2140263 -142142226 + L1MEd LINE L1 846 1615 -875 2515 57 0 3 chr12 2140263 2140559 -142141930 + AluY SINE Alu 1 295 -16 619 278 70 67 chr12 2140559 2140639 -142141850 + L1MEd LINE L1 1615 1693 -797 350 255 142 21 chr12 2140883 2141024 -142141465 - MIR SINE MIR 0 262 105 265 290 21 21 chr12 2141120 2141213 -142141276 - MIR SINE MIR -156 106 14 182 218 182 0 chr12 2142515 2142570 -142139919 + MIR SINE MIR 84 148 -114 321 232 146 0 chr12 2142828 2142910 -142139579 - L2 LINE L2 -2 3311 3218 22 35 0 0 chr12 2142967 2142996 -142139493 + AT_rich Low_complexity Low_complexity 1 29 0 2672 291 52 23 chr12 2143158 2144139 -142138350 - L3 LINE CR1 -44 1533 525 665 343 141 36 chr12 2144229 2145225 -142137264 + L2 LINE L2 2159 3272 0 1200 238 63 58 chr12 2145486 2145914 -142136575 - MLT1J2 LTR MaLR 0 450 21 247 290 174 61 chr12 2146448 2146776 -142135713 + L3b LINE CR1 1211 1575 -8 258 323 56 71 chr12 2146902 2147100 -142135389 + MIR SINE MIR 24 218 -44 812 263 123 4 chr12 2147362 2147590 -142134899 + MIR SINE MIR 8 262 0 370 250 70 62 chr12 2148337 2148465 -142134024 - L2 LINE L2 -8 3264 3136 4084 140 62 35 chr12 2148591 2148727 -142133762 - L1MB2 LINE L1 -2 6169 6038 2263 97 17 0 chr12 2148727 2149027 -142133462 + AluY SINE Alu 1 305 -6 4084 140 62 35 chr12 2149027 2149285 -142133204 - L1MB2 LINE L1 -133 6038 5788 2525 91 0 0 chr12 2149285 2149592 -142132897 - AluSx SINE Alu -5 307 1 4084 140 62 35 chr12 2149592 2150025 -142132464 - L1MB2 LINE L1 -383 5788 5319 1853 182 173 18 chr12 2150285 2150719 -142131770 - MLT1D LTR MaLR 0 505 5 312 337 46 11 chr12 2150809 2150984 -142131505 + MIR3 SINE MIR 10 190 -18 466 269 17 8 chr12 2151701 2151820 -142130669 - MIR SINE MIR -90 172 53 182 288 206 0 chr12 2152317 2152390 -142130099 - L2 LINE L2 -21 3251 3164 185 148 148 19 chr12 2153050 2153104 -142129385 - MIR SINE MIR -94 168 108 595 235 25 24 chr12 2153507 2153680 -142128809 - MIR3 SINE MIR 0 208 34 297 271 127 25 chr12 2153994 2154112 -142128377 - MIR SINE MIR -132 130 1 305 294 64 9 chr12 2154935 2155044 -142127445 - L2 LINE L2 -3 3269 3155 4004 148 35 20 chr12 2155544 2156109 -142126380 - L1MB4 LINE L1 -1 6179 5599 2573 58 0 13 chr12 2156109 2156420 -142126069 - AluY SINE Alu -4 307 1 4004 148 35 20 chr12 2156420 2156608 -142125881 - L1MB4 LINE L1 -581 5599 5415 507 357 33 0 chr12 2156918 2157100 -142125389 - MIR3 SINE MIR 0 208 21 298 321 30 15 chr12 2157808 2157939 -142124550 - MIR SINE MIR -51 211 79 866 283 14 5 chr12 2158824 2159043 -142123446 - MIR SINE MIR -40 222 2 486 311 52 35 chr12 2159087 2159138 -142123351 - L1ME4a LINE L1 -134 5987 5938 2279 96 0 63 chr12 2159138 2159470 -142123019 + AluSx SINE Alu 1 311 -1 486 311 52 35 chr12 2159470 2159481 -142123008 - L1ME4a LINE L1 -183 5938 5929 1562 136 26 49 chr12 2159481 2159745 -142122744 + AluJb SINE Alu 40 297 -15 1357 126 215 19 chr12 2159745 2160006 -142122483 + AluJb SINE Alu 1 312 0 486 311 52 35 chr12 2160006 2160288 -142122201 - L1ME4a LINE L1 -191 5930 5635 335 310 71 7 chr12 2160964 2161119 -142121370 - L2 LINE L2 0 3313 3149 194 281 225 0 chr12 2161232 2161321 -142121168 - L2 LINE L2 -5 3308 3200 10005 75 13 1 chr12 2161564 2163664 -142118825 - L1PA7 LINE L1 -2 6152 4034 737 248 14 37 chr12 2166892 2167106 -142115383 - MER3 DNA MER1_type 0 209 1 670 281 98 62 chr12 2168319 2168764 -142113725 - L2 LINE L2 -232 3040 2575 467 226 9 19 chr12 2169691 2169797 -142112692 - MER3 DNA MER1_type -104 105 1 263 299 0 13 chr12 2171690 2171767 -142110722 - MER117 DNA MER1_type 0 197 122 258 204 0 0 chr12 2171942 2171991 -142110498 - MLT1K LTR MaLR -15 573 525 717 229 76 88 chr12 2172991 2173524 -142108965 - MLT1G LTR MaLR -2 588 1 186 119 143 24 chr12 2173579 2173621 -142108868 - MIR3 SINE MIR -25 183 137 526 252 22 7 chr12 2174629 2174764 -142107725 + MER5A DNA MER1_type 19 155 -34 303 302 126 6 chr12 2175045 2175204 -142107285 - MER5B DNA MER1_type 0 178 1 2228 84 20 17 chr12 2175346 2175644 -142106845 - AluY SINE Alu -12 299 1 283 272 136 8 chr12 2175646 2175771 -142106718 - MIR3 SINE MIR -30 178 38 2060 127 0 7 chr12 2175961 2176266 -142106223 + AluSx SINE Alu 1 303 0 349 293 104 12 chr12 2176430 2176594 -142105895 - MIR SINE MIR -6 202 22 551 227 123 19 chr12 2177437 2177591 -142104898 + MIR SINE MIR 2 171 -91 236 313 10 31 chr12 2177725 2177821 -142104668 + MIR SINE MIR 20 113 -149 188 254 18 36 chr12 2177937 2177992 -142104497 + L3 LINE CR1 1517 1570 -7 627 240 137 11 chr12 2178034 2178209 -142104280 + MIR3 SINE MIR 9 205 -3 369 0 0 0 chr12 2179631 2179672 -142102817 + (TG)n Simple_repeat Simple_repeat 2 42 0 510 252 8 0 chr12 2181185 2181316 -142101173 + L1MB7 LINE L1 6041 6172 -12 199 332 37 32 chr12 2181577 2181767 -142100722 + L2 LINE L2 2074 2264 -1050 220 225 117 92 chr12 2181871 2181991 -142100498 - MER5A DNA MER1_type -66 123 1 288 260 89 107 chr12 2182002 2182069 -142100420 + MIR SINE MIR 21 88 -174 2392 73 0 0 chr12 2182069 2182372 -142100117 + AluY SINE Alu 1 303 -8 288 260 89 107 chr12 2182372 2182473 -142100016 + MIR SINE MIR 88 186 -76 740 186 44 50 chr12 2182773 2182939 -142099550 + MIR SINE MIR 98 262 0 369 0 0 0 chr12 2183084 2183125 -142099364 + (TG)n Simple_repeat Simple_repeat 1 41 0 180 337 46 62 chr12 2183746 2184250 -142098239 - L2 LINE L2 -893 2421 1926 485 283 96 0 chr12 2184551 2184717 -142097772 - MER5A DNA MER1_type -2 187 6 303 280 43 0 chr12 2185716 2185809 -142096680 + MIR SINE MIR 134 230 -32 205 290 14 14 chr12 2186657 2186726 -142095763 - MER5B DNA MER1_type -67 111 43 250 158 0 0 chr12 2186772 2186810 -142095679 + MIR SINE MIR 79 116 -146 421 270 10 0 chr12 2186956 2187056 -142095433 + L2 LINE L2 3208 3308 -5 329 288 128 40 chr12 2187089 2187214 -142095275 - MIR3 SINE MIR -58 150 15 2349 63 0 3 chr12 2187385 2187685 -142094804 - AluY SINE Alu -12 299 1 422 330 73 18 chr12 2187757 2187975 -142094514 - MIR SINE MIR -28 234 5 272 229 73 31 chr12 2189065 2189161 -142093328 - MIR SINE MIR 0 262 163 195 42 0 0 chr12 2189164 2189188 -142093301 + (T)n Simple_repeat Simple_repeat 1 24 0 43918 30 23 1 chr12 2189278 2195296 -142087193 - L1PA2 LINE L1 -1 6154 2 654 235 29 0 chr12 2195315 2195451 -142087038 - MIR SINE MIR -117 145 6 185 167 100 100 chr12 2195805 2195865 -142086624 + MER5B DNA MER1_type 63 122 -56 471 299 61 18 chr12 2196164 2196357 -142086132 + MIR SINE MIR 11 211 -51 702 203 101 0 chr12 2196402 2196540 -142085949 + AluJo SINE Alu 125 276 -36 1355 76 5 5 chr12 2197651 2197835 -142084654 + MSTB1 LTR MaLR 249 432 0 1696 206 28 30 chr12 2197990 2198388 -142084101 - MLT1C LTR MaLR 0 467 71 294 246 0 0 chr12 2199331 2199388 -142083101 + L2 LINE L2 3255 3311 -2 413 290 0 22 chr12 2199434 2199572 -142082917 + MIR3 SINE MIR 1 135 -73 443 285 112 75 chr12 2199681 2200173 -142082316 - L2 LINE L2 0 3313 2804 6437 137 37 44 chr12 2201179 2201950 -142080539 + Tigger3b DNA MER2_type 1 763 -2265 2151 86 27 0 chr12 2201950 2202242 -142080247 - AluSx SINE Alu -12 300 1 6437 137 37 44 chr12 2202242 2202708 -142079781 + Tigger3b DNA MER2_type 763 1230 -1 395 232 196 9 chr12 2203406 2203518 -142078971 - L2 LINE L2 -1 3312 3180 272 274 0 0 chr12 2204542 2204604 -142077885 - L2 LINE L2 0 3272 3211 396 278 61 28 chr12 2204862 2205042 -142077447 + MIR SINE MIR 77 262 0 190 246 53 18 chr12 2205275 2205332 -142077157 - L2 LINE L2 -243 3070 3012 1406 161 19 8 chr12 2207526 2207786 -142074703 - AluJo SINE Alu -16 296 34 368 229 0 62 chr12 2210142 2210238 -142072251 - MIR3 SINE MIR -11 197 108 999 246 103 14 chr12 2211175 2211456 -142071033 + MLT1J LTR MaLR 1 306 -205 23 33 0 0 chr12 2211653 2211683 -142070806 + AT_rich Low_complexity Low_complexity 1 30 0 1730 102 57 3 chr12 2212279 2212562 -142069927 - L1MB3 LINE L1 0 6183 5886 204 339 0 0 chr12 2214256 2214321 -142068168 - MIR3 SINE MIR -34 174 110 * 212 308 19 75 chr12 2214320 2214427 -142068062 + MIR3 SINE MIR 81 181 -27 299 324 84 20 chr12 2214967 2215266 -142067223 + L1ME3A LINE L1 5817 6134 -36 332 226 32 0 chr12 2215348 2215441 -142067048 + HAL1 LINE L1 45 140 -2367 2719 261 115 34 chr12 2215887 2216085 -142066404 + HAL1 LINE L1 154 335 -2172 891 141 49 5 chr12 2216085 2216269 -142066220 + L1MA8 LINE L1 6098 6289 -2 2719 261 115 34 chr12 2216269 2217271 -142065218 + HAL1 LINE L1 335 1451 -1056 1288 148 14 5 chr12 2217271 2217487 -142065002 + AluJb SINE Alu 1 218 -94 1141 217 84 49 chr12 2217501 2217847 -142064642 + HAL1 LINE L1 1427 1784 -723 658 248 159 25 chr12 2217871 2218185 -142064304 + HAL1 LINE L1 2129 2484 -23 1740 129 11 11 chr12 2218186 2218466 -142064023 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr12 2218466 2218489 -142064000 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2216 99 6 6 chr12 2218565 2218878 -142063611 - AluSq SINE Alu 0 313 1 207 245 0 19 chr12 2218921 2218974 -142063515 - L2 LINE L2 0 3313 3262 238 188 146 0 chr12 2219261 2219309 -142063180 + L2 LINE L2 3213 3267 -5 2156 111 0 0 chr12 2219788 2220094 -142062395 - AluSg SINE Alu -4 306 1 217 132 0 26 chr12 2221017 2221055 -142061434 + MIR SINE MIR 117 153 -109 1640 95 4 22 chr12 2221964 2222196 -142060293 + AluSp SINE Alu 74 301 -12 447 326 18 2 chr12 2222251 2222434 -142060055 - MIR SINE MIR -63 145 5 473 217 217 31 chr12 2223293 2223454 -142059035 + MIR3 SINE MIR 3 193 -15 551 301 119 4 chr12 2223631 2223857 -142058632 + MIR SINE MIR 3 254 -8 186 268 66 54 chr12 2224426 2224559 -142057930 + MIR SINE MIR 13 148 -60 204 40 0 0 chr12 2224702 2224727 -142057762 + (TG)n Simple_repeat Simple_repeat 2 26 0 521 232 18 61 chr12 2225559 2225723 -142056766 + MIR SINE MIR 105 261 -1 181 324 301 4 chr12 2226033 2226292 -142056197 - L2 LINE L2 -1 3271 2936 1952 265 84 23 chr12 2226293 2226991 -142055498 - L1ME LINE L1 -5327 743 3 240 360 98 12 chr12 2227104 2227268 -142055221 - L2 LINE L2 -480 2834 2657 319 222 14 14 chr12 2227301 2227373 -142055116 + MIR3 SINE MIR 121 192 -16 307 302 16 62 chr12 2228964 2229093 -142053396 + L2 LINE L2 3132 3254 -18 211 314 29 0 chr12 2230474 2230544 -142051945 + MIR SINE MIR 63 134 -128 497 333 144 17 chr12 2230576 2230924 -142051565 - L2 LINE L2 -1 3312 2921 320 253 50 30 chr12 2231021 2231120 -142051369 + MLT1J1 LTR MaLR 346 446 0 402 217 12 0 chr12 2232708 2232791 -142049698 + MIR SINE MIR 92 175 -87 291 284 57 0 chr12 2232838 2232926 -142049563 + MIR SINE MIR 79 171 -91 1618 242 48 95 chr12 2233391 2233594 -142048895 - L1MC5 LINE L1 -27 7934 7723 2550 145 9 53 chr12 2233594 2234048 -142048441 - Tigger2a DNA MER2_type 0 434 1 1618 242 48 95 chr12 2234048 2234834 -142047655 - L1MC5 LINE L1 -238 7723 6991 777 258 146 59 chr12 2234852 2235466 -142047023 - L2 LINE L2 0 3313 2645 620 143 18 42 chr12 2236435 2236603 -142045886 + CT-rich Low_complexity Low_complexity 2 165 0 2043 130 30 0 chr12 2236611 2236911 -142045578 - AluSx SINE Alu -3 309 1 1966 156 0 0 chr12 2237754 2238059 -142044430 + AluSx SINE Alu 1 305 0 254 258 30 0 chr12 2238410 2238476 -142044013 - L3 LINE CR1 -2 1575 1508 318 320 37 29 chr12 2239623 2239865 -142042624 + MIR3 SINE MIR 1 246 -16 232 349 132 13 chr12 2239898 2240050 -142042439 - L3 LINE CR1 -584 993 824 181 286 5 0 chr12 2240161 2240229 -142042260 + MIR SINE MIR 74 143 -65 527 312 168 71 chr12 2240334 2241080 -142041409 + L3 LINE CR1 709 1526 -51 216 0 0 0 chr12 2241106 2241130 -142041359 + (A)n Simple_repeat Simple_repeat 1 24 0 233 173 30 29 chr12 2241922 2241989 -142040500 + MIR SINE MIR 103 167 -41 922 141 0 7 chr12 2242012 2242147 -142040342 - AluJo SINE Alu -178 134 1 194 271 0 0 chr12 2242174 2242222 -142040267 + MIR SINE MIR 183 230 -32 282 290 70 37 chr12 2242359 2242498 -142039991 - MER5B DNA MER1_type -30 159 6 415 270 51 15 chr12 2243599 2243736 -142038753 - L2 LINE L2 0 3313 3172 1833 161 37 45 chr12 2244367 2244747 -142037742 + MLT1B LTR MaLR 4 380 -10 612 279 132 5 chr12 2245663 2245882 -142036607 - MIR SINE MIR -13 249 3 341 309 71 42 chr12 2246095 2246263 -142036226 - MIR SINE MIR -44 218 46 2602 62 0 3 chr12 2247785 2248093 -142034396 + AluY SINE Alu 1 307 -4 284 348 127 17 chr12 2249483 2249664 -142032825 - L2 LINE L2 0 3272 3072 538 292 125 24 chr12 2249683 2250060 -142032429 - MLT1J2 LTR MaLR -23 427 13 363 278 0 0 chr12 2250488 2250664 -142031825 + (CA)n Simple_repeat Simple_repeat 2 177 0 411 272 0 0 chr12 2250695 2250875 -142031614 + (CA)n Simple_repeat Simple_repeat 1 180 0 498 256 0 0 chr12 2250889 2251069 -142031420 + (CA)n Simple_repeat Simple_repeat 1 180 0 270 340 38 0 chr12 2251581 2251687 -142030802 + MIR SINE MIR 120 229 -33 2038 154 0 0 chr12 2252147 2252452 -142030037 + AluJb SINE Alu 1 305 -7 333 282 194 31 chr12 2252646 2252940 -142029549 - L3 LINE CR1 -58 1519 1178 700 172 7 17 chr12 2253079 2253370 -142029119 + CT-rich Low_complexity Low_complexity 1 288 0 182 263 0 0 chr12 2253404 2253442 -142029047 - L3 LINE CR1 -613 964 927 337 262 149 42 chr12 2254304 2254472 -142028017 + MIR3 SINE MIR 23 208 0 277 279 38 77 chr12 2254788 2254971 -142027518 - MIR3 SINE MIR -7 201 26 359 272 29 110 chr12 2258065 2258213 -142024276 + L2 LINE L2 2826 2944 -369 2560 153 23 16 chr12 2258213 2258644 -142023845 + Tigger2a DNA MER2_type 1 434 0 359 272 29 110 chr12 2258644 2258767 -142023722 + L2 LINE L2 2944 3075 -238 467 234 18 0 chr12 2258770 2258881 -142023608 + AluJb SINE Alu 196 308 -4 472 192 242 28 chr12 2258926 2259108 -142023381 + L2 LINE L2 3093 3313 0 676 278 90 45 chr12 2259258 2259312 -142023177 - L2 LINE L2 -6 3307 3257 1230 126 36 50 chr12 2259312 2259534 -142022955 + MER20 DNA MER1_type 1 219 0 676 278 90 45 chr12 2259534 2259835 -142022654 - L2 LINE L2 -56 3257 2936 235 227 247 0 chr12 2260613 2260710 -142021779 - MLT1L LTR MaLR 0 615 495 264 287 282 5 chr12 2260739 2260941 -142021548 - MLT1L LTR MaLR -340 275 18 285 325 49 8 chr12 2261136 2261259 -142021230 - MIR3 SINE MIR -5 203 76 2508 13 0 0 chr12 2263024 2263327 -142019162 - L1PA2 LINE L1 -599 5556 5254 5238 22 10 0 chr12 2263329 2263925 -142018564 + L1PA2 LINE L1 5554 6155 0 287 297 124 22 chr12 2264371 2264556 -142017933 + L2 LINE L2 3008 3211 -102 1658 176 47 9 chr12 2264677 2265018 -142017471 - MLT1A1 LTR MaLR -2 363 10 536 328 33 6 chr12 2265380 2265560 -142016929 + MIR SINE MIR 20 204 -58 1952 146 0 35 chr12 2266502 2266818 -142015671 + AluJo SINE Alu 1 305 -7 198 349 121 0 chr12 2267100 2267166 -142015323 - L2 LINE L2 -10 3262 3189 225 196 22 0 chr12 2268960 2269006 -142013483 + GA-rich Low_complexity Low_complexity 2 48 0 2455 78 0 7 chr12 2270689 2270995 -142011494 - AluSq SINE Alu -9 304 1 349 376 8 0 chr12 2271696 2271813 -142010676 - L2 LINE L2 -19 3253 3136 181 244 12 85 chr12 2273123 2273205 -142009284 + MIR3 SINE MIR 95 170 -38 493 309 90 5 chr12 2273239 2273427 -142009062 + MIR SINE MIR 59 262 0 410 278 56 16 chr12 2273413 2273539 -142008950 - MIR SINE MIR -47 215 85 * 659 199 33 50 chr12 2275574 2275755 -142006734 + MER5B DNA MER1_type 1 178 0 2990 145 4 16 chr12 2275915 2276425 -142006064 + L1MB3 LINE L1 5679 6182 -1 250 240 125 42 chr12 2276723 2276819 -142005670 + MIR SINE MIR 31 134 -128 242 282 115 58 chr12 2276988 2277162 -142005327 + MIR3 SINE MIR 18 201 -7 306 276 114 16 chr12 2279227 2279350 -142003139 + MIR SINE MIR 109 243 -19 702 282 181 25 chr12 2279726 2280400 -142002089 - L2 LINE L2 0 3313 2539 876 283 62 58 chr12 2280517 2281118 -142001371 + L1ME4a LINE L1 5492 6094 -27 396 236 30 125 chr12 2281264 2281472 -142001017 + MIR3 SINE MIR 5 191 -71 211 306 27 72 chr12 2282556 2282667 -141999822 - MIR SINE MIR -149 113 8 200 219 0 0 chr12 2282821 2282862 -141999627 + L2 LINE L2 3271 3311 -2 221 266 0 47 chr12 2283273 2283337 -141999152 + L2 LINE L2 2212 2272 -1042 272 323 68 38 chr12 2283976 2284109 -141998380 + MIR3 SINE MIR 5 141 -67 435 38 0 0 chr12 2285095 2285148 -141997341 + (CA)n Simple_repeat Simple_repeat 2 54 0 450 173 37 105 chr12 2285250 2285425 -141997064 - MIR SINE MIR -62 146 35 359 291 212 20 chr12 2286314 2286517 -141995972 + MIR SINE MIR 15 256 -6 455 257 53 23 chr12 2286697 2286868 -141995621 + MER104 DNA MER2_type 5 180 0 503 258 230 10 chr12 2287213 2287422 -141995067 - MIR SINE MIR -6 256 2 221 294 110 32 chr12 2288058 2288228 -141994261 + MIR3 SINE MIR 6 187 -61 965 286 139 11 chr12 2288379 2288958 -141993531 - L2 LINE L2 -2 3311 2658 565 308 88 9 chr12 2289730 2289957 -141992532 - MIR SINE MIR 0 262 18 252 349 54 24 chr12 2290104 2290270 -141992219 + L2 LINE L2 3127 3297 -16 203 263 58 88 chr12 2290408 2290545 -141991944 - MIR SINE MIR -46 216 84 4270 199 33 60 chr12 2290905 2292078 -141990411 - L1MC4a LINE L1 -1 7807 6666 311 342 88 0 chr12 2292301 2292415 -141990074 - L2 LINE L2 0 3313 3190 617 261 113 15 chr12 2294848 2295043 -141987446 - MIR SINE MIR -21 241 28 471 315 146 0 chr12 2295142 2295307 -141987182 - MER5A DNA MER1_type 0 189 1 529 293 72 22 chr12 2297886 2298067 -141984422 + MIR SINE MIR 73 262 0 379 290 98 36 chr12 2300156 2300349 -141982140 - MIR SINE MIR -7 255 51 334 234 56 37 chr12 2300751 2300858 -141981631 + L2 LINE L2 3205 3313 0 364 284 147 10 chr12 2301339 2301536 -141980953 - Charlie8 DNA MER1_type -2128 289 66 208 189 27 0 chr12 2301720 2301757 -141980732 + MIR SINE MIR 117 154 -108 493 274 11 45 chr12 2301789 2301968 -141980521 - MIR SINE MIR -29 233 61 384 222 267 7 chr12 2302531 2302666 -141979823 + MIR SINE MIR 6 175 -87 199 162 0 0 chr12 2304440 2304477 -141978012 - MIR SINE MIR -118 144 108 926 218 88 70 chr12 2304592 2304923 -141977566 + MER46C DNA MER2_type 1 337 -1 511 335 138 0 chr12 2305457 2305681 -141976808 - MIR SINE MIR 0 262 8 662 291 69 5 chr12 2307769 2307972 -141974517 + MIR SINE MIR 47 262 0 825 293 16 8 chr12 2308049 2308238 -141974251 + MIR SINE MIR 8 201 -61 1059 221 8 55 chr12 2308238 2308473 -141974016 + MER58A DNA MER1_type 1 224 0 825 293 16 8 chr12 2308473 2308536 -141973953 + MIR SINE MIR 201 262 0 182 310 60 80 chr12 2308569 2308669 -141973820 - MIR SINE MIR -77 185 88 907 99 0 0 chr12 2308740 2308861 -141973628 - AluY SINE Alu -7 304 184 1921 54 0 0 chr12 2308861 2309082 -141973407 - AluY SINE Alu -90 221 1 379 292 108 0 chr12 2309687 2309807 -141972682 - L3b LINE CR1 -159 1424 1292 209 229 42 0 chr12 2310835 2310883 -141971606 + MIR SINE MIR 98 147 -61 218 239 292 9 chr12 2312574 2312687 -141969802 + MIR SINE MIR 112 256 -6 203 309 117 11 chr12 2312703 2312797 -141969692 - L3b LINE CR1 -157 1426 1323 199 269 154 13 chr12 2313719 2313797 -141968692 - MER5A DNA MER1_type -98 91 3 309 237 105 18 chr12 2314043 2314157 -141968332 + MIR SINE MIR 25 148 -114 248 318 65 0 chr12 2314684 2314791 -141967698 - L2 LINE L2 -6 3307 3194 399 346 15 8 chr12 2315113 2315246 -141967243 + MER5A DNA MER1_type 51 184 -5 209 264 194 39 chr12 2315710 2315839 -141966650 - MER5B DNA MER1_type -26 152 4 693 267 96 23 chr12 2315998 2316301 -141966188 - MLT1J1 LTR MaLR -113 333 9 2278 111 49 9 chr12 2316310 2316634 -141965855 - MER1B DNA MER1_type 0 337 1 271 167 117 0 chr12 2316847 2316907 -141965582 + MER116 DNA Mariner 1 67 -13 228 350 50 21 chr12 2317498 2317638 -141964851 - MIR SINE MIR -111 151 8 695 174 84 62 chr12 2318110 2318288 -141964201 + MER5A DNA MER1_type 1 182 -7 1139 169 0 11 chr12 2318711 2318895 -141963594 + AluJo SINE Alu 86 267 -45 1689 181 23 19 chr12 2319169 2319479 -141963010 + AluJo SINE Alu 1 311 -1 620 287 72 51 chr12 2319602 2319777 -141962712 + MIR SINE MIR 7 190 -72 1777 217 112 8 chr12 2319777 2319923 -141962566 - Charlie1b DNA MER1_type -2238 523 393 2496 83 0 6 chr12 2319923 2320236 -141962253 + AluY SINE Alu 1 311 0 1777 217 112 8 chr12 2320236 2320563 -141961926 - Charlie1b DNA MER1_type -2368 393 1 620 287 72 51 chr12 2320563 2320624 -141961865 + MIR SINE MIR 190 248 -14 744 296 72 41 chr12 2321817 2322236 -141960253 - L2 LINE L2 -4 3309 2878 * 1457 251 89 69 chr12 2322204 2322870 -141959619 - L2 LINE L2 -345 2969 2291 518 277 0 0 chr12 2323353 2323465 -141959024 - MIR3 SINE MIR -6 202 91 207 298 43 21 chr12 2324755 2324849 -141957640 + MIR3 SINE MIR 109 204 -4 240 287 82 25 chr12 2325595 2325717 -141956772 + MIR SINE MIR 91 219 -43 283 321 30 15 chr12 2325766 2325897 -141956592 + MIR SINE MIR 20 152 -110 323 310 9 35 chr12 2326050 2326163 -141956326 + L2 LINE L2 3150 3259 -13 340 253 14 42 chr12 2326251 2326381 -141956108 - MIR SINE MIR -21 187 63 225 178 74 28 chr12 2326527 2326602 -141955887 - MIR3 SINE MIR -54 154 77 795 288 77 29 chr12 2328635 2329114 -141953375 - LTR33 LTR ERVL -4 517 16 640 259 43 82 chr12 2330433 2330592 -141951897 + MIR SINE MIR 40 189 -73 1993 127 21 0 chr12 2330592 2330876 -141951613 + AluJo SINE Alu 1 290 -22 640 259 43 82 chr12 2330876 2330948 -141951541 + MIR SINE MIR 189 262 0 1179 167 5 28 chr12 2332038 2332253 -141950236 + MER2 DNA MER2_type 1 210 -135 24 53 0 0 chr12 2332280 2332318 -141950171 + AT_rich Low_complexity Low_complexity 1 38 0 471 278 35 58 chr12 2333563 2333736 -141948753 - MIR SINE MIR -74 188 20 243 150 0 0 chr12 2334964 2335004 -141947485 - MER2 DNA MER2_type -225 120 81 32 43 0 0 chr12 2335017 2335063 -141947426 + AT_rich Low_complexity Low_complexity 1 46 0 239 307 53 26 chr12 2335121 2335235 -141947254 - MIR SINE MIR -64 144 28 207 277 128 64 chr12 2336052 2336193 -141946296 - MIR SINE MIR -2 260 111 615 75 0 0 chr12 2336309 2336403 -141946086 + (CA)n Simple_repeat Simple_repeat 2 95 0 3235 215 54 23 chr12 2337234 2338172 -141944317 - L1ME1 LINE L1 -6 6229 5265 1087 192 19 27 chr12 2338177 2338437 -141944052 - L1ME1 LINE L1 -1276 4939 4682 651 254 10 24 chr12 2338436 2338641 -141943848 - L1ME1 LINE L1 -3651 2564 2363 * 25 31 0 0 chr12 2338691 2338723 -141943766 + AT_rich Low_complexity Low_complexity 1 32 0 1151 145 9 54 chr12 2338728 2338949 -141943540 - MER2 DNA MER2_type -134 211 1 514 243 87 0 chr12 2338950 2339112 -141943377 - L1ME1 LINE L1 -3850 2365 2213 207 267 28 57 chr12 2339337 2339513 -141942976 + (CTTTG)n Simple_repeat Simple_repeat 2 172 0 3035 254 60 19 chr12 2339744 2339942 -141942547 - L1ME1 LINE L1 -4150 2246 2058 1337 42 6 0 chr12 2339942 2340108 -141942381 - L1PA4 LINE L1 -6 6149 5983 3035 254 60 19 chr12 2340108 2341008 -141941481 - L1ME1 LINE L1 -4338 2058 1103 617 253 60 76 chr12 2341795 2342044 -141940445 - MLT1L LTR MaLR -125 490 246 337 301 184 7 chr12 2342045 2342181 -141940308 - MER5A DNA MER1_type -1 188 29 231 270 56 0 chr12 2342200 2342289 -141940200 - MLT1J LTR MaLR -317 194 101 294 256 0 39 chr12 2342526 2342604 -141939885 + L2 LINE L2 3193 3267 -5 335 227 21 62 chr12 2342661 2342758 -141939731 - MER5A DNA MER1_type -85 104 12 591 236 7 21 chr12 2344232 2344376 -141938113 - MER63 DNA MER1_type -294 768 1 186 176 194 46 chr12 2345593 2345701 -141936788 - L2 LINE L2 -38 3234 3111 283 288 0 0 chr12 2346568 2346641 -141935848 - MER5B DNA MER1_type -1 177 105 965 185 46 0 chr12 2346661 2346834 -141935655 - MER5A DNA MER1_type -6 183 3 382 311 0 0 chr12 2346847 2346937 -141935552 + MER5B DNA MER1_type 88 177 -1 221 288 51 0 chr12 2346967 2347026 -141935463 - L2 LINE L2 -6 3307 3246 473 239 51 36 chr12 2348518 2348656 -141933833 - L2 LINE L2 0 3313 3174 526 328 81 6 chr12 2348857 2349031 -141933458 - MIR3 SINE MIR -4 204 18 502 306 117 5 chr12 2349944 2350166 -141932323 + MIR SINE MIR 16 262 0 241 395 47 8 chr12 2351062 2351191 -141931298 - L2 LINE L2 -6 3266 3133 400 285 32 16 chr12 2351442 2351565 -141930924 + MIR SINE MIR 4 128 -134 337 270 0 11 chr12 2352167 2352256 -141930233 + L3b LINE CR1 1302 1389 -194 1528 121 36 5 chr12 2352433 2352656 -141929833 - MER30 DNA MER1_type 0 230 1 253 219 134 37 chr12 2352752 2352834 -141929655 + L2 LINE L2 3222 3311 -2 250 309 104 83 chr12 2352949 2353383 -141929106 - L2 LINE L2 0 3272 2830 239 316 164 29 chr12 2354304 2354548 -141927941 + L2 LINE L2 2994 3270 -2 354 326 92 32 chr12 2354617 2354855 -141927634 - MIR SINE MIR 0 262 2 194 282 118 0 chr12 2355486 2355571 -141926918 + L2 LINE L2 2476 2570 -744 278 287 110 7 chr12 2357008 2357144 -141925345 + MIR SINE MIR 1 150 -112 2275 108 0 0 chr12 2357284 2357571 -141924918 - AluSc SINE Alu -22 287 1 184 382 11 0 chr12 2357704 2357793 -141924696 + MIR SINE MIR 45 134 -74 329 255 38 125 chr12 2358132 2358316 -141924173 - MER5B DNA MER1_type -10 168 1 318 269 38 108 chr12 2358498 2358684 -141923805 - MER5A DNA MER1_type 0 189 17 621 270 113 0 chr12 2358775 2358934 -141923555 + MIR SINE MIR 69 245 -17 1872 147 3 33 chr12 2359308 2359614 -141922875 + AluJb SINE Alu 1 297 -15 296 118 29 59 chr12 2360511 2360579 -141921910 - MER103 DNA DNA -54 112 47 1127 189 102 81 chr12 2362179 2362458 -141920031 - MLT1B LTR MaLR 0 390 99 804 160 8 0 chr12 2362458 2362589 -141919900 + FLAM_C SINE Alu 1 132 -1 1127 189 102 81 chr12 2362589 2362690 -141919799 - MLT1B LTR MaLR -291 99 2 472 298 33 22 chr12 2364199 2364380 -141918109 - MIR3 SINE MIR -6 202 20 1694 186 4 0 chr12 2364554 2364829 -141917660 + AluJb SINE Alu 19 294 -18 752 256 128 9 chr12 2364877 2365088 -141917401 - MIR SINE MIR -11 251 16 318 258 0 21 chr12 2365676 2365769 -141916720 + MER103 DNA DNA 8 98 -68 494 235 27 54 chr12 2366310 2366459 -141916030 - MIR3 SINE MIR -48 160 16 188 305 0 34 chr12 2366516 2366575 -141915914 - MER5A DNA MER1_type -3 186 130 457 217 12 121 chr12 2366878 2367044 -141915445 - MER5A DNA MER1_type -41 148 1 1860 157 61 5 chr12 2367232 2367641 -141914848 - L1MA9 LINE L1 -844 5302 4670 4740 148 86 13 chr12 2367641 2368452 -141914037 + L1MA9 LINE L1 5303 6194 -118 321 26 0 0 chr12 2368452 2368490 -141913999 + (CA)n Simple_repeat Simple_repeat 1 38 0 4740 148 86 13 chr12 2368490 2368619 -141913870 + L1MA9 LINE L1 6194 6312 0 215 292 0 0 chr12 2368752 2368800 -141913689 - L2 LINE L2 -84 3188 3141 421 250 225 25 chr12 2369091 2369251 -141913238 - MIR SINE MIR -50 212 21 195 42 0 0 chr12 2369327 2369351 -141913138 + (TA)n Simple_repeat Simple_repeat 2 25 0 791 128 0 15 chr12 2370791 2370924 -141911565 + L1MB3 LINE L1 6052 6182 -1 972 323 177 21 chr12 2371407 2372165 -141910324 - L3 LINE CR1 -231 1346 471 1217 235 128 35 chr12 2373334 2373882 -141908607 - L1ME3A LINE L1 -11 6159 5561 655 248 80 36 chr12 2375154 2375395 -141907094 + MIR SINE MIR 12 262 0 194 211 39 39 chr12 2375870 2375922 -141906567 + MIR SINE MIR 181 232 -30 3226 196 39 20 chr12 2375926 2376641 -141905848 + L1MB2 LINE L1 5441 6169 -2 182 284 222 0 chr12 2377486 2377567 -141904922 - L2 LINE L2 -30 3242 3144 246 244 0 44 chr12 2377711 2377801 -141904688 + GA-rich Low_complexity Low_complexity 2 87 0 215 213 19 28 chr12 2377824 2377932 -141904557 + GA-rich Low_complexity Low_complexity 4 110 0 348 204 153 10 chr12 2380314 2380412 -141902077 + MIR SINE MIR 88 199 -63 761 242 175 47 chr12 2380457 2380800 -141901689 - L2 LINE L2 -9 3304 2918 258 234 43 64 chr12 2381483 2381577 -141900912 - MIR SINE MIR -81 181 90 397 297 0 25 chr12 2381719 2381876 -141900613 + MIR SINE MIR 38 256 -6 204 274 16 16 chr12 2382049 2382111 -141900378 + CT-rich Low_complexity Low_complexity 4 65 0 21 0 0 0 chr12 2382245 2382266 -141900223 + AT_rich Low_complexity Low_complexity 1 21 0 427 222 75 96 chr12 2383837 2384066 -141898423 - MIR SINE MIR -17 245 26 402 281 244 6 chr12 2384481 2384645 -141897844 + MIR SINE MIR 54 256 -6 368 296 19 56 chr12 2385267 2385429 -141897060 - MER5A DNA MER1_type -31 158 3 190 238 0 24 chr12 2385790 2385832 -141896657 - MIR3 SINE MIR -26 182 142 532 162 204 26 chr12 2385966 2386157 -141896332 + MLT1J LTR MaLR 229 453 -58 218 310 152 38 chr12 2386396 2386554 -141895935 + MIR3 SINE MIR 18 193 -15 208 329 26 13 chr12 2389275 2389351 -141893138 + MIR3 SINE MIR 83 159 -49 627 221 15 28 chr12 2389371 2389577 -141892912 - MIR SINE MIR 0 262 6 375 321 12 42 chr12 2389677 2389845 -141892644 + L1ME4a LINE L1 4857 5019 -1127 21 36 0 0 chr12 2390139 2390167 -141892322 + AT_rich Low_complexity Low_complexity 1 28 0 1059 255 134 34 chr12 2390208 2390655 -141891834 + L1MC4 LINE L1 6652 7143 -899 2042 173 49 117 chr12 2390657 2391334 -141891155 + L1MC4 LINE L1 7412 8042 0 332 283 134 5 chr12 2391458 2391828 -141890661 + L1ME4a LINE L1 5559 5997 -124 268 304 60 46 chr12 2392163 2392301 -141890188 - MIR SINE MIR -48 160 18 232 367 87 5 chr12 2392576 2392772 -141889717 + L3b LINE CR1 1276 1487 -96 225 244 27 20 chr12 2392819 2392906 -141889583 - MIR SINE MIR -78 130 94 183 218 164 0 chr12 2393249 2393304 -141889185 - L2 LINE L2 -9 3263 3200 660 232 0 0 chr12 2393498 2393623 -141888866 + FLAM_A SINE Alu 1 125 -8 388 305 40 13 chr12 2393629 2393780 -141888709 + MIR SINE MIR 53 207 -55 221 83 28 0 chr12 2395965 2396001 -141886488 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 193 286 176 55 chr12 2396613 2396812 -141885677 - MIR SINE MIR 0 262 40 3340 134 104 18 chr12 2398004 2398684 -141883805 - Tigger3(Golem) DNA MER2_type -1 3028 2290 570 191 29 0 chr12 2398681 2398786 -141883703 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 437 283 157 13 chr12 2398789 2399019 -141883470 - L1ME4a LINE L1 -24 6097 5835 300 305 34 17 chr12 2399228 2399403 -141883086 - L1ME4a LINE L1 -519 5602 5445 2515 57 3 3 chr12 2399650 2399948 -141882541 + AluY SINE Alu 1 298 -13 216 111 28 0 chr12 2401491 2401527 -141880962 + L2 LINE L2 3213 3249 -23 274 291 38 136 chr12 2401903 2402116 -141880373 - MIR SINE MIR -51 211 20 890 150 19 25 chr12 2402412 2402572 -141879917 + MER53 DNA DNA 24 182 -7 626 289 35 20 chr12 2404440 2404637 -141877852 - MIR SINE MIR -49 213 14 344 213 0 22 chr12 2405169 2405352 -141877137 + (TG)n Simple_repeat Simple_repeat 2 180 0 306 286 48 29 chr12 2407993 2408098 -141874391 - MIR3 SINE MIR -8 200 94 280 196 0 0 chr12 2408686 2408737 -141873752 + MIR SINE MIR 98 148 -114 191 138 0 0 chr12 2408758 2408787 -141873702 + L2 LINE L2 3211 3239 -33 592 279 135 5 chr12 2409246 2409461 -141873028 - MIR SINE MIR 0 262 20 358 284 203 31 chr12 2409778 2410000 -141872489 - L3 LINE CR1 -10 1567 1308 1127 129 5 55 chr12 2410065 2410282 -141872207 - MER20 DNA MER1_type -4 215 10 212 254 34 0 chr12 2412000 2412059 -141870430 - L2 LINE L2 -6 3307 3247 202 322 17 17 chr12 2412087 2412202 -141870287 - L2 LINE L2 -166 3106 2992 189 294 15 15 chr12 2414513 2414581 -141867908 + L2 LINE L2 2985 3052 -220 995 191 44 0 chr12 2414661 2414865 -141867624 + MER20 DNA MER1_type 4 216 -3 204 245 19 0 chr12 2415009 2415062 -141867427 + (AATTG)n Simple_repeat Simple_repeat 4 57 0 186 318 35 35 chr12 2415579 2415664 -141866825 + MIR3 SINE MIR 10 94 -114 492 240 19 0 chr12 2415806 2415910 -141866579 - MIR SINE MIR -115 147 42 2365 96 3 0 chr12 2416663 2416966 -141865523 + AluSq SINE Alu 1 304 -9 513 0 0 0 chr12 2417226 2417283 -141865206 + (TG)n Simple_repeat Simple_repeat 2 58 0 227 296 69 15 chr12 2417379 2417480 -141865009 - MIR SINE MIR -48 160 57 22 0 0 0 chr12 2418512 2418534 -141863955 + AT_rich Low_complexity Low_complexity 1 22 0 526 272 127 19 chr12 2418590 2418858 -141863631 + L3b LINE CR1 1109 1405 -178 362 277 9 27 chr12 2418998 2419110 -141863379 + MER5A DNA MER1_type 32 141 -48 197 69 52 35 chr12 2419124 2419182 -141863307 + (CACCC)n Simple_repeat Simple_repeat 1 59 0 409 296 9 0 chr12 2419612 2419720 -141862769 + MIR3 SINE MIR 87 195 -13 251 281 130 36 chr12 2420271 2420463 -141862026 + MLT1J LTR MaLR 42 251 -260 858 221 128 12 chr12 2420483 2420732 -141861757 + MLT1J LTR MaLR 226 503 -8 346 386 82 0 chr12 2420850 2421083 -141861406 + MIR SINE MIR 5 256 -6 187 94 0 62 chr12 2421121 2421153 -141861336 - L2 LINE L2 -43 3270 3241 844 339 200 3 chr12 2424055 2424619 -141857870 + L3 LINE CR1 56 730 -847 226 274 98 44 chr12 2424902 2425106 -141857383 + HAL1b LINE L1 517 731 -617 352 274 84 0 chr12 2425115 2425210 -141857279 + MIR SINE MIR 20 122 -140 28 95 0 0 chr12 2425285 2425369 -141857120 + AT_rich Low_complexity Low_complexity 1 84 0 1843 138 48 33 chr12 2425634 2425670 -141856819 - MER1B DNA MER1_type -2373 339 305 2022 145 119 38 chr12 2425670 2426064 -141856425 - MSTA LTR MaLR -2 426 1 1843 138 48 33 chr12 2426064 2426361 -141856128 - MER1B DNA MER1_type -2407 305 1 383 287 52 64 chr12 2426368 2426700 -141855789 + L1ME4a LINE L1 2459 2790 -3750 24 0 0 0 chr12 2426850 2426874 -141855615 + AT_rich Low_complexity Low_complexity 1 24 0 701 299 111 28 chr12 2427075 2427726 -141854763 + L1ME4a LINE L1 4312 5016 -1524 26 0 0 0 chr12 2427986 2428012 -141854477 + AT_rich Low_complexity Low_complexity 1 26 0 2330 90 0 17 chr12 2428378 2428678 -141853811 - AluSx SINE Alu -17 295 1 411 281 112 49 chr12 2428681 2428966 -141853523 + L1ME4a LINE L1 5352 5654 -886 798 254 146 36 chr12 2428972 2429554 -141852935 + L1ME4a LINE L1 5661 6306 -209 1020 287 151 37 chr12 2429618 2430186 -141852303 + L3 LINE CR1 741 1373 -204 918 177 21 52 chr12 2430394 2430586 -141851903 - MER5A DNA MER1_type 0 189 4 198 0 0 0 chr12 2430699 2430721 -141851768 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr12 2431568 2431590 -141850899 + AT_rich Low_complexity Low_complexity 1 22 0 194 353 37 37 chr12 2432066 2432202 -141850287 - L3b LINE CR1 -99 1484 1349 511 270 196 48 chr12 2432213 2432701 -141849788 - L2 LINE L2 -2 3311 2682 271 284 163 14 chr12 2432715 2432856 -141849633 - L3b LINE CR1 -243 1340 1179 481 248 20 46 chr12 2432914 2433067 -141849422 - MIR3 SINE MIR -11 197 49 292 277 88 36 chr12 2433982 2434119 -141848370 - MIR SINE MIR -75 187 44 214 297 126 34 chr12 2434337 2434512 -141847977 + MIR3 SINE MIR 9 199 -9 192 327 18 0 chr12 2435020 2435075 -141847414 + L2 LINE L2 3208 3263 -9 241 267 105 0 chr12 2435198 2435284 -141847205 + MIR SINE MIR 30 124 -138 224 288 15 0 chr12 2435398 2435464 -141847025 + L2 LINE L2 3186 3252 -20 404 291 37 38 chr12 2436592 2436800 -141845689 - MIR SINE MIR -37 225 16 735 229 24 6 chr12 2437483 2437653 -141844836 + MER97a DNA MER1_type? 5 177 -717 439 146 11 11 chr12 2437754 2437843 -141844646 + CT-rich Low_complexity Low_complexity 3 91 0 349 204 34 34 chr12 2438548 2438636 -141843853 - MIR3 SINE MIR -40 168 81 2846 0 0 0 chr12 2438724 2439019 -141843470 + AluYa5 SINE Alu 1 295 -16 272 273 23 55 chr12 2440069 2440197 -141842292 + MIR3 SINE MIR 72 195 -13 1582 219 73 20 chr12 2441036 2441489 -141841000 + Charlie4a DNA MER1_type 16 492 -16 301 272 136 39 chr12 2442004 2442107 -141840382 + MIR SINE MIR 33 145 -117 195 371 61 8 chr12 2442940 2443072 -141839417 - L3b LINE CR1 -4 1579 1441 307 344 48 32 chr12 2443180 2443369 -141839120 - L3b LINE CR1 -282 1301 1110 218 342 38 0 chr12 2444162 2444241 -141838248 - MIR3 SINE MIR -5 203 122 214 344 66 57 chr12 2444523 2444735 -141837754 + L2 LINE L2 2587 2800 -514 394 262 19 0 chr12 2444739 2444846 -141837643 - MER5B DNA MER1_type -2 176 68 1616 191 87 17 chr12 2444846 2445201 -141837288 - MER63 DNA MER1_type 0 1060 681 269 206 31 72 chr12 2445221 2445318 -141837171 + MER5B DNA MER1_type 84 176 -2 472 320 35 89 chr12 2445322 2445815 -141836674 + L2 LINE L2 2807 3272 0 190 342 45 27 chr12 2446061 2446172 -141836317 - L2 LINE L2 -37 3276 3164 2220 134 0 0 chr12 2446177 2446484 -141836005 + AluSx SINE Alu 1 307 -5 225 0 0 0 chr12 2446511 2446536 -141835953 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 1669 145 51 77 chr12 2447030 2447444 -141835045 + L1MA9 LINE L1 5910 6312 0 190 306 0 0 chr12 2447676 2447738 -141834751 - L2 LINE L2 -956 2358 2297 702 314 108 20 chr12 2447817 2448416 -141834073 - L2 LINE L2 -964 2350 1699 275 231 0 46 chr12 2449245 2449310 -141833179 + MER94 DNA DNA 72 133 -1 217 312 130 0 chr12 2449377 2449454 -141833035 - L2 LINE L2 -17 3255 3169 412 354 118 22 chr12 2449873 2450500 -141831989 - L2 LINE L2 -624 2690 2004 193 273 161 12 chr12 2450525 2450686 -141831803 - L2 LINE L2 -1430 1884 1700 875 238 15 0 chr12 2450763 2450965 -141831524 - MER3 DNA MER1_type 0 209 5 267 167 0 0 chr12 2452427 2452469 -141830020 + MIR SINE MIR 59 100 -162 356 296 89 7 chr12 2452501 2452636 -141829853 + MIR SINE MIR 73 218 -44 1819 132 40 36 chr12 2452802 2453106 -141829383 + AluJo SINE Alu 5 309 -3 27 29 0 0 chr12 2453427 2453461 -141829028 + AT_rich Low_complexity Low_complexity 1 34 0 213 39 0 0 chr12 2453981 2454007 -141828482 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 955 119 8 0 chr12 2454012 2454138 -141828351 - AluJb SINE Alu -30 282 156 1872 149 0 11 chr12 2454184 2454459 -141828030 - AluSx SINE Alu -6 306 35 2240 214 104 69 chr12 2457983 2458781 -141823708 - LTR1B LTR ERV1 0 826 1 385 250 151 13 chr12 2459077 2459229 -141823260 - MIR SINE MIR -62 200 28 287 207 0 58 chr12 2460399 2460486 -141822003 - MIR SINE MIR -70 192 111 851 211 47 30 chr12 2460542 2460774 -141821715 + MIR SINE MIR 10 245 -17 402 241 11 0 chr12 2461471 2461572 -141820917 + MIR SINE MIR 53 153 -63 991 153 49 178 chr12 2464113 2464478 -141818011 - L1MD2 LINE L1 -8 6234 5917 7555 199 72 12 chr12 2464479 2466298 -141816191 - L1MDa LINE L1 -4085 2455 529 232 179 0 0 chr12 2466602 2466641 -141815848 - L1M2 LINE L1 -807 5484 5446 873 119 106 0 chr12 2466705 2466856 -141815633 - L1M2 LINE L1 -696 5484 5318 905 211 32 0 chr12 2466857 2467042 -141815447 + L1MDa LINE L1 336 526 -6014 2075 156 8 0 chr12 2467043 2467395 -141815094 + L1MB3 LINE L1 5822 6176 -7 1106 181 174 40 chr12 2467408 2467706 -141814783 - L1MDa LINE L1 -6196 344 7 305 308 82 32 chr12 2468180 2468345 -141814144 + MIR3 SINE MIR 5 179 -29 234 91 0 0 chr12 2469604 2469637 -141812852 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 176 0 0 chr12 2469673 2469724 -141812765 + (TG)n Simple_repeat Simple_repeat 2 52 0 297 128 0 0 chr12 2469762 2469809 -141812680 + (TG)n Simple_repeat Simple_repeat 2 48 0 2297 102 3 0 chr12 2471996 2472291 -141810198 - AluSx SINE Alu -16 296 1 214 306 207 29 chr12 2472681 2472923 -141809566 + L2 LINE L2 2898 3182 -90 438 306 22 8 chr12 2473016 2473150 -141809339 + MIR SINE MIR 21 156 -106 523 207 41 0 chr12 2473618 2473739 -141808750 - MER103 DNA DNA -29 137 12 204 329 13 0 chr12 2475029 2475105 -141807384 + L2 LINE L2 2980 3056 -257 339 198 9 19 chr12 2475307 2475413 -141807076 + GA-rich Low_complexity Low_complexity 3 107 0 600 216 76 29 chr12 2475427 2475598 -141806891 - MIR SINE MIR -76 186 8 479 267 93 17 chr12 2475752 2475924 -141806565 - MIR SINE MIR -71 191 7 344 258 106 23 chr12 2476348 2476480 -141806009 + MER5B DNA MER1_type 1 143 -35 277 359 31 8 chr12 2476889 2477017 -141805472 - L2 LINE L2 -8 3264 3134 232 167 24 0 chr12 2477516 2477558 -141804931 + GA-rich Low_complexity Low_complexity 2 44 0 212 69 0 0 chr12 2478014 2478043 -141804446 - MIR SINE MIR -64 144 116 2037 141 79 25 chr12 2478085 2478489 -141804000 - MSTB LTR MaLR 0 426 1 414 0 0 0 chr12 2479077 2479123 -141803366 + (TG)n Simple_repeat Simple_repeat 2 47 0 2175 122 3 3 chr12 2480605 2480899 -141801590 + AluSc SINE Alu 1 294 -15 352 333 0 23 chr12 2481522 2481654 -141800835 - MER94 DNA DNA 0 134 6 346 248 55 9 chr12 2481668 2481777 -141800712 + MER117 DNA MER1_type 1 114 -83 278 311 0 0 chr12 2482049 2482123 -141800366 + L3 LINE CR1 1503 1576 -1 204 288 0 17 chr12 2482269 2482328 -141800161 - MIR SINE MIR -105 157 100 704 284 47 0 chr12 2482331 2482542 -141799947 + MIR SINE MIR 28 248 -14 181 271 51 0 chr12 2482614 2482673 -141799816 - MIR SINE MIR -175 87 26 278 309 39 34 chr12 2484103 2484307 -141798182 + L1ME4a LINE L1 5738 5942 -179 181 373 88 0 chr12 2485156 2485258 -141797231 - L2 LINE L2 -29 3284 3174 1601 222 61 57 chr12 2485530 2486007 -141796482 - MLT1H LTR MaLR 0 549 71 2086 113 11 3 chr12 2486576 2486894 -141795595 - AluSq SINE Alu 0 320 1 1817 188 93 19 chr12 2487877 2488307 -141794182 - MLT1C LTR MaLR 0 467 6 1834 144 38 49 chr12 2488893 2489261 -141793228 - MLT1A1 LTR MaLR -1 364 1 426 315 43 22 chr12 2490090 2490274 -141792215 - MER5A DNA MER1_type 0 189 2 * 503 314 0 13 chr12 2490274 2490426 -141792063 - MIR3 SINE MIR -47 161 12 351 286 112 0 chr12 2490577 2490675 -141791814 + MIR SINE MIR 133 241 -21 334 336 0 0 chr12 2491695 2491811 -141790678 + MIR3 SINE MIR 68 183 -25 375 212 0 0 chr12 2492428 2492513 -141789976 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 286 297 85 48 chr12 2492632 2492797 -141789692 - L3 LINE CR1 -144 1433 1263 240 175 167 53 chr12 2492879 2492993 -141789496 - MER113 DNA MER1_type? -306 215 89 328 341 51 7 chr12 2493394 2493532 -141788957 - MIR SINE MIR -111 151 8 195 373 40 0 chr12 2493565 2493640 -141788849 - MIR3 SINE MIR -40 168 91 736 263 81 16 chr12 2495709 2495956 -141786533 - MLT1L LTR MaLR -4 611 349 388 284 39 8 chr12 2496429 2496556 -141785933 + MIR SINE MIR 58 188 -74 890 203 0 15 chr12 2496596 2496934 -141785555 + (TGG)n Simple_repeat Simple_repeat 1 332 0 719 209 0 11 chr12 2496964 2497146 -141785343 + (TGG)n Simple_repeat Simple_repeat 1 180 0 903 178 0 4 chr12 2497181 2497413 -141785076 + (TGG)n Simple_repeat Simple_repeat 1 231 0 195 366 0 0 chr12 2498159 2498230 -141784259 + L3 LINE CR1 1492 1562 -15 1875 159 26 0 chr12 2499084 2499430 -141783059 - L1MB4 LINE L1 0 6180 5826 358 291 23 0 chr12 2500978 2501064 -141781425 - MIR SINE MIR -64 144 57 231 330 10 10 chr12 2501364 2501461 -141781028 + GA-rich Low_complexity Low_complexity 3 99 0 1981 148 92 14 chr12 2501565 2501936 -141780553 - MSTB LTR MaLR 0 426 27 2137 136 32 70 chr12 2501958 2502398 -141780091 - MSTB-int LTR MaLR 0 1651 1229 222 317 37 0 chr12 2503255 2503337 -141779152 + MIR3 SINE MIR 121 205 -3 271 309 66 66 chr12 2503570 2503858 -141778631 + L2 LINE L2 2329 2616 -698 278 180 16 0 chr12 2504993 2505054 -141777435 + (TGGG)n Simple_repeat Simple_repeat 3 64 0 869 171 0 11 chr12 2505088 2505269 -141777220 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 243 257 40 0 chr12 2505269 2505343 -141777146 + (TGGG)n Simple_repeat Simple_repeat 1 77 0 762 211 0 0 chr12 2505343 2505523 -141776966 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 742 198 7 0 chr12 2505550 2505862 -141776627 + (TGGA)n Simple_repeat Simple_repeat 1 314 0 348 284 26 17 chr12 2506412 2506528 -141775961 - MER5A DNA MER1_type -14 175 59 1919 153 14 23 chr12 2508130 2508476 -141774013 - MER61A LTR ERV1 0 343 1 2759 36 0 0 chr12 2509247 2509553 -141772936 + AluY SINE Alu 1 306 -5 482 317 12 0 chr12 2512515 2512676 -141769813 + L2 LINE L2 110 272 -3042 435 270 101 14 chr12 2512703 2512851 -141769638 - MER58B DNA MER1_type -3 338 178 2177 259 108 132 chr12 2512894 2514262 -141768227 + L2 LINE L2 361 1760 -1553 1266 167 22 61 chr12 2514262 2514573 -141767916 + MER33 DNA MER1_type 26 324 0 2177 259 108 132 chr12 2514573 2515917 -141766572 + L2 LINE L2 1760 3313 0 218 323 32 0 chr12 2517819 2517881 -141764608 - MIR SINE MIR -125 83 20 1983 108 23 96 chr12 2517946 2518289 -141764200 - AluYb8 SINE Alu 0 318 1 496 277 18 119 chr12 2518936 2519362 -141763127 - MLT1I LTR MaLR -20 389 1 2754 275 66 73 chr12 2520020 2521583 -141760906 + L2 LINE L2 1752 3312 -1 2617 37 10 0 chr12 2521885 2522183 -141760306 - AluY SINE Alu -10 301 1 24 53 0 0 chr12 2522417 2522455 -141760034 + AT_rich Low_complexity Low_complexity 1 38 0 258 265 0 15 chr12 2522551 2522619 -141759870 - L2 LINE L2 -212 3060 2994 234 284 45 0 chr12 2523201 2523268 -141759221 - L2 LINE L2 -3 3310 3241 794 268 49 8 chr12 2523898 2524144 -141758345 + MIR SINE MIR 5 260 -2 222 345 30 18 chr12 2525636 2525804 -141756685 + MIR3 SINE MIR 24 193 -15 293 255 106 28 chr12 2526228 2526369 -141756120 - MIR3 SINE MIR -16 192 41 329 258 161 0 chr12 2527738 2527862 -141754627 + MIR3 SINE MIR 29 172 -36 192 40 0 0 chr12 2527973 2527998 -141754491 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 188 250 36 0 chr12 2528272 2528328 -141754161 - L2 LINE L2 -3 3269 3212 24 0 0 0 chr12 2528750 2528774 -141753715 + AT_rich Low_complexity Low_complexity 1 24 0 670 274 139 22 chr12 2529511 2529734 -141752755 + MIR SINE MIR 12 260 -2 1901 143 21 0 chr12 2529818 2530105 -141752384 - AluSx SINE Alu -18 294 2 228 219 27 0 chr12 2530115 2530188 -141752301 - L1MB7 LINE L1 -1 6183 6109 * 1574 270 50 79 chr12 2530178 2530658 -141751831 - L1ME LINE L1 -4331 1749 1257 2413 85 3 0 chr12 2530658 2530953 -141751536 - AluSg1 SINE Alu -13 296 1 1574 270 50 79 chr12 2530953 2531826 -141750663 - L1ME LINE L1 -4823 1257 531 337 286 29 0 chr12 2532588 2532693 -141749796 - MIR3 SINE MIR -45 163 56 2416 102 0 3 chr12 2533447 2533761 -141748728 + AluSq SINE Alu 1 313 0 2480 57 0 0 chr12 2533992 2534302 -141748187 + AluY SINE Alu 1 310 0 498 290 35 21 chr12 2534310 2534705 -141747784 + L1MEd LINE L1 691 1081 -5048 375 289 108 52 chr12 2534793 2534987 -141747502 + L1ME3A LINE L1 5959 6163 -7 235 217 60 36 chr12 2535134 2535217 -141747272 + MER117 DNA MER1_type 32 116 -81 461 335 138 13 chr12 2535283 2535507 -141746982 + MIR SINE MIR 11 262 0 543 295 33 0 chr12 2536464 2536674 -141745815 + LTR33 LTR ERVL 20 236 -285 254 279 29 0 chr12 2537355 2537423 -141745066 + MER5A DNA MER1_type 18 87 -102 599 332 101 8 chr12 2537537 2537775 -141744714 - MIR SINE MIR 0 262 3 929 212 0 6 chr12 2538189 2538354 -141744135 - FRAM SINE Alu -2 164 1 428 282 41 100 chr12 2539257 2539576 -141742913 + L2 LINE L2 2972 3271 -1 227 328 0 0 chr12 2539566 2539633 -141742856 + MIR3 SINE MIR 136 202 -6 * 587 316 35 4 chr12 2541333 2541561 -141740928 + MIR SINE MIR 9 243 -19 739 339 60 37 chr12 2541568 2541999 -141740490 - L3 LINE CR1 -16 1561 1121 327 333 91 0 chr12 2542245 2542377 -141740112 - L2 LINE L2 -541 2773 2630 286 238 0 112 chr12 2542431 2542574 -141739915 + L1ME4a LINE L1 5992 6118 -3 652 304 87 58 chr12 2542944 2543476 -141739013 - L2 LINE L2 -2 3270 2730 646 167 30 8 chr12 2544522 2544654 -141737835 - L1MB3 LINE L1 0 6183 6049 279 282 51 0 chr12 2544941 2545019 -141737470 + MIR SINE MIR 111 192 -70 237 65 0 0 chr12 2548071 2548102 -141734387 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 222 344 133 20 chr12 2548868 2549019 -141733470 - L3 LINE CR1 -1398 179 12 1827 203 54 14 chr12 2549923 2550367 -141732122 + L1ME1 LINE L1 5700 6161 -5 308 164 15 0 chr12 2550394 2550461 -141732028 + GA-rich Low_complexity Low_complexity 2 69 0 374 57 19 0 chr12 2550593 2550646 -141731843 + (GGA)n Simple_repeat Simple_repeat 2 55 0 315 0 0 0 chr12 2550937 2550972 -141731517 + (TC)n Simple_repeat Simple_repeat 2 36 0 978 79 29 14 chr12 2552986 2553126 -141729363 - L1PA8 LINE L1 0 6172 6031 286 221 47 47 chr12 2553851 2553937 -141728552 - L2 LINE L2 -11 3261 3176 202 226 38 0 chr12 2554923 2554976 -141727513 + CT-rich Low_complexity Low_complexity 6 60 0 389 331 64 17 chr12 2555006 2555178 -141727311 - MER5A DNA MER1_type -4 185 6 306 0 0 0 chr12 2556944 2556978 -141725511 + (CA)n Simple_repeat Simple_repeat 1 34 0 2514 67 0 13 chr12 2559899 2560214 -141722275 + AluY SINE Alu 1 311 0 238 186 23 0 chr12 2560429 2560472 -141722017 + L2 LINE L2 3267 3310 -3 714 229 30 61 chr12 2561230 2561461 -141721028 - L2 LINE L2 0 3313 3090 546 186 132 12 chr12 2561842 2562009 -141720480 - MER5A DNA MER1_type -2 187 1 731 175 145 6 chr12 2562095 2562261 -141720228 - MER5A DNA MER1_type 0 189 1 775 246 29 19 chr12 2562476 2562683 -141719806 + MER63A DNA MER1_type 1 209 -1 1074 117 0 0 chr12 2564488 2564633 -141717856 + FRAM SINE Alu 1 140 -36 484 303 96 5 chr12 2565342 2565530 -141716959 + MIR SINE MIR 58 262 0 373 298 126 7 chr12 2565565 2565716 -141716773 - MIR3 SINE MIR -6 202 34 454 370 45 4 chr12 2566588 2566831 -141715658 - MIR SINE MIR -7 255 3 1742 188 10 13 chr12 2567344 2567647 -141714842 + AluJo SINE Alu 1 302 -10 2784 216 49 11 chr12 2568328 2568936 -141713553 + MER82 DNA MER2_type 14 644 -9 243 125 0 0 chr12 2570546 2570586 -141711903 + (CA)n Simple_repeat Simple_repeat 2 41 0 955 212 30 20 chr12 2571114 2571317 -141711172 + MER63A DNA MER1_type 1 205 -5 1061 174 11 0 chr12 2572686 2572864 -141709625 + MER5A DNA MER1_type 4 183 -6 2064 274 157 24 chr12 2574857 2576148 -141706341 - L2 LINE L2 0 3313 1850 2583 54 0 0 chr12 2577301 2577599 -141704890 + AluY SINE Alu 1 298 -13 213 291 154 18 chr12 2577908 2578018 -141704471 - MIR3 SINE MIR -72 136 12 233 223 58 39 chr12 2581470 2581573 -141700916 + L3b LINE CR1 1144 1248 -335 300 258 83 17 chr12 2581782 2581902 -141700587 - MIR SINE MIR -70 192 65 266 379 0 10 chr12 2583271 2583374 -141699115 - L2 LINE L2 -82 3190 3089 560 301 79 20 chr12 2583459 2583864 -141698625 - MLT1J2 LTR MaLR -2 448 20 267 309 92 44 chr12 2584016 2584265 -141698224 - L2 LINE L2 -432 2882 2622 285 238 125 12 chr12 2587206 2587286 -141695203 + MIR3 SINE MIR 120 208 0 2159 243 17 22 chr12 2587544 2588084 -141694405 - LTR31 LTR ERV1 -9 610 74 211 308 46 0 chr12 2588407 2588472 -141694017 + L2 LINE L2 3237 3304 -9 248 303 90 49 chr12 2590109 2590231 -141692258 - MIR SINE MIR -116 146 20 555 226 71 19 chr12 2590291 2590446 -141692043 + MIR3 SINE MIR 7 169 -39 266 309 81 52 chr12 2590767 2590977 -141691512 - L3 LINE CR1 -11 1566 1351 201 167 0 0 chr12 2591288 2591324 -141691165 + CT-rich Low_complexity Low_complexity 1 36 0 198 216 52 95 chr12 2592774 2592890 -141689599 + MIR SINE MIR 109 219 -43 402 353 143 28 chr12 2593572 2594034 -141688455 - L3 LINE CR1 -87 1490 976 2386 100 0 0 chr12 2594082 2594382 -141688107 + AluY SINE Alu 1 300 -11 2074 139 0 22 chr12 2594391 2594708 -141687781 + AluJo SINE Alu 1 310 -2 350 308 85 8 chr12 2595388 2595518 -141686971 + MIR3 SINE MIR 9 148 -60 1952 177 0 0 chr12 2595525 2595824 -141686665 + AluJo SINE Alu 5 303 -9 474 227 133 0 chr12 2595882 2596010 -141686479 - MIR SINE MIR -109 153 9 640 266 106 30 chr12 2596206 2596443 -141686046 + MIR SINE MIR 6 260 -2 297 298 0 11 chr12 2597413 2597507 -141684982 + T-rich Low_complexity Low_complexity 3 95 0 205 294 92 37 chr12 2597510 2597619 -141684870 - MIR3 SINE MIR -41 167 53 293 244 78 43 chr12 2597994 2598109 -141684380 + MIR SINE MIR 46 164 -98 480 266 176 23 chr12 2598821 2599208 -141683281 - LTR33 LTR ERVL -58 463 18 563 266 136 10 chr12 2599437 2599636 -141682853 - MER58A DNA MER1_type 0 224 1 1537 213 14 72 chr12 2599811 2600225 -141682264 - MLT1B LTR MaLR 0 390 1 8961 100 26 8 chr12 2603471 2604735 -141677754 - HSMAR1 DNA Mariner 0 1287 1 254 164 18 0 chr12 2606597 2606652 -141675837 + (TG)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr12 2607033 2607055 -141675434 + AT_rich Low_complexity Low_complexity 1 22 0 476 299 24 37 chr12 2607381 2607545 -141674944 + MIR3 SINE MIR 36 197 -11 21 36 0 0 chr12 2607557 2607585 -141674904 + AT_rich Low_complexity Low_complexity 1 28 0 466 285 163 19 chr12 2611157 2611427 -141671062 - L2 LINE L2 0 3313 3005 332 300 50 0 chr12 2612074 2612194 -141670295 + MIR3 SINE MIR 42 167 -41 185 271 0 34 chr12 2612284 2612343 -141670146 + MIR3 SINE MIR 149 205 -3 255 301 14 0 chr12 2616821 2616894 -141665595 + L2 LINE L2 3240 3313 0 22 0 0 0 chr12 2617910 2617932 -141664557 + AT_rich Low_complexity Low_complexity 1 22 0 347 284 12 0 chr12 2617954 2618035 -141664454 + L2 LINE L2 3232 3313 0 231 88 0 0 chr12 2618240 2618274 -141664215 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 324 237 223 22 chr12 2618575 2618714 -141663775 - MIR SINE MIR -93 169 3 1289 201 59 7 chr12 2618796 2619085 -141663404 - MER33 DNA MER1_type -4 320 17 207 0 0 0 chr12 2619823 2619846 -141662643 + (A)n Simple_repeat Simple_repeat 1 23 0 3500 136 34 37 chr12 2621709 2622354 -141660135 - L1MA3 LINE L1 0 6305 5663 229 252 35 61 chr12 2622950 2623065 -141659424 + L3 LINE CR1 1439 1550 -27 454 204 59 150 chr12 2623086 2623306 -141659183 + MER112 DNA MER1_type 48 247 -13 216 338 93 25 chr12 2623617 2623821 -141658668 + L2 LINE L2 2426 2643 -671 670 231 11 33 chr12 2624097 2624161 -141658328 - MER5B DNA MER1_type 0 178 114 2898 7 3 0 chr12 2624161 2624471 -141658018 + AluYb8 SINE Alu 1 311 -7 670 231 11 33 chr12 2624471 2624588 -141657901 - MER5B DNA MER1_type -64 114 1 301 347 122 0 chr12 2624856 2625003 -141657486 + MIR SINE MIR 63 227 -35 236 315 178 7 chr12 2625079 2625225 -141657264 - MIR SINE MIR -3 259 89 394 279 120 22 chr12 2626179 2626362 -141656127 + MIR SINE MIR 62 262 0 302 316 107 20 chr12 2626952 2627196 -141655293 - MLT1J LTR MaLR -22 489 225 2359 150 48 7 chr12 2627246 2627904 -141654585 + L1MB3 LINE L1 5451 6183 0 368 261 147 41 chr12 2628198 2628271 -141654218 - MER112 DNA MER1_type 0 260 196 3179 185 49 0 chr12 2628271 2628921 -141653568 - L1MB7 LINE L1 -1 6183 5502 368 261 147 41 chr12 2628921 2629065 -141653424 - MER112 DNA MER1_type -64 196 20 658 259 25 84 chr12 2629976 2630250 -141652239 - MIR SINE MIR -3 259 2 207 100 0 0 chr12 2631003 2631033 -141651456 + (T)n Simple_repeat Simple_repeat 1 30 0 447 68 0 0 chr12 2631272 2631331 -141651158 + (TCC)n Simple_repeat Simple_repeat 2 60 0 1083 106 18 0 chr12 2631437 2631781 -141650708 + (TCC)n Simple_repeat Simple_repeat 1 350 0 407 43 57 0 chr12 2631790 2631860 -141650629 + CT-rich Low_complexity Low_complexity 2 75 0 1049 99 11 17 chr12 2631861 2632042 -141650447 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1495 169 26 38 chr12 2632053 2632319 -141650170 - AluJo SINE Alu 0 312 50 180 0 0 0 chr12 2636208 2636228 -141646261 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 500 257 70 48 chr12 2636737 2636885 -141645604 - L2 LINE L2 0 3313 3153 2696 13 0 0 chr12 2636885 2637188 -141645301 - AluY SINE Alu -8 303 1 500 257 70 48 chr12 2637188 2637272 -141645217 - L2 LINE L2 -160 3153 3072 446 240 123 18 chr12 2637585 2637756 -141644733 - L2 LINE L2 -747 2567 2379 23 0 0 0 chr12 2638592 2638615 -141643874 + AT_rich Low_complexity Low_complexity 1 23 0 1545 163 7 53 chr12 2638615 2638915 -141643574 - AluJo SINE Alu -26 286 1 274 287 0 37 chr12 2639871 2639979 -141642510 + MER5A DNA MER1_type 21 124 -65 466 270 85 36 chr12 2640164 2640399 -141642090 - MIR SINE MIR 0 262 19 219 222 0 0 chr12 2640673 2640718 -141641771 + CT-rich Low_complexity Low_complexity 3 47 0 805 104 0 17 chr12 2641061 2641176 -141641313 + AluSg/x SINE Alu 188 300 -12 293 239 85 46 chr12 2642661 2642791 -141639698 + MIR SINE MIR 74 208 -54 180 318 16 0 chr12 2642898 2642961 -141639528 + MIR3 SINE MIR 145 208 0 211 200 0 0 chr12 2643595 2643630 -141638859 + polypurine Low_complexity Low_complexity 3 37 0 582 306 116 36 chr12 2645979 2646368 -141636121 + L1MC5 LINE L1 7513 7932 -29 202 243 0 43 chr12 2647421 2647491 -141634998 + CT-rich Low_complexity Low_complexity 1 67 0 323 299 51 22 chr12 2647527 2647664 -141634825 + MER91A DNA MER1_type 55 195 -1 886 293 85 34 chr12 2648128 2648970 -141633519 - L2 LINE L2 -8 3305 2425 1747 226 67 7 chr12 2650705 2651139 -141631350 - MLT1C LTR MaLR -2 465 6 269 164 15 75 chr12 2651284 2651351 -141631138 - L2 LINE L2 -11 3261 3199 * 546 214 84 39 chr12 2651332 2651486 -141631003 - MIR SINE MIR -96 166 6 189 0 0 0 chr12 2651724 2651745 -141630744 + (T)n Simple_repeat Simple_repeat 1 21 0 440 217 0 12 chr12 2651926 2652009 -141630480 + MER81 DNA DNA 1 82 -32 306 363 62 27 chr12 2652521 2652777 -141629712 - L1MEd LINE L1 -4240 2070 1806 1014 305 65 42 chr12 2652836 2653853 -141628636 - L1MEd LINE L1 -4456 1673 622 271 258 0 16 chr12 2654132 2654194 -141628295 - L1MEd LINE L1 -6058 61 1 359 308 49 35 chr12 2654197 2654340 -141628149 + MIR SINE MIR 46 190 -72 367 337 148 12 chr12 2658380 2658549 -141623940 + L3 LINE CR1 1169 1360 -217 777 282 48 9 chr12 2659881 2660108 -141622381 - MIR SINE MIR -14 248 13 481 248 67 0 chr12 2660289 2660394 -141622095 + MER81 DNA DNA 2 113 -1 680 206 11 0 chr12 2661402 2661690 -141620799 + (TG)n Simple_repeat Simple_repeat 1 291 0 364 256 35 0 chr12 2661690 2661776 -141620713 - MER5B DNA MER1_type -79 99 11 288 302 58 38 chr12 2661860 2662042 -141620447 - MIR SINE MIR -46 216 35 268 404 0 0 chr12 2662147 2662251 -141620238 + MIR SINE MIR 33 136 -72 3883 141 33 11 chr12 2662747 2663385 -141619104 - MER39B LTR ERV1 -1 652 1 463 354 53 5 chr12 2663606 2663812 -141618677 - MIR SINE MIR -37 225 10 184 351 99 45 chr12 2665251 2665584 -141616905 + L2 LINE L2 2916 3266 -6 630 195 0 46 chr12 2667285 2667455 -141615034 - MIR SINE MIR -62 146 18 251 272 0 0 chr12 2667598 2667679 -141614810 + (CAT)n Simple_repeat Simple_repeat 2 82 0 203 284 54 40 chr12 2668489 2668563 -141613926 - L2 LINE L2 -616 2698 2624 2002 85 0 4 chr12 2668862 2669121 -141613368 + AluSx SINE Alu 1 258 -54 217 122 0 41 chr12 2670445 2670494 -141611995 + (GGAGA)n Simple_repeat Simple_repeat 1 47 0 390 305 79 42 chr12 2672223 2672413 -141610076 - MIR SINE MIR -52 210 14 607 273 36 16 chr12 2674330 2674579 -141607910 + L1M4 LINE L1 4357 4610 -1536 180 342 26 26 chr12 2678809 2678885 -141603604 - L2 LINE L2 -15 3298 3223 219 312 145 22 chr12 2679074 2679212 -141603277 - MIR SINE MIR -6 256 102 202 315 41 14 chr12 2679262 2679335 -141603154 - MIR SINE MIR -24 238 164 257 233 68 27 chr12 2680037 2680110 -141602379 - L3 LINE CR1 -171 1406 1331 495 296 292 17 chr12 2680189 2680960 -141601529 - L2 LINE L2 -101 3212 2218 225 352 14 35 chr12 2681258 2681400 -141601089 - L2 LINE L2 -467 2847 2709 324 308 85 46 chr12 2683224 2683354 -141599135 + MER20B DNA MER1_type 42 176 -607 461 238 89 83 chr12 2684601 2684689 -141597800 - MIR SINE MIR 0 262 171 1540 164 26 48 chr12 2684689 2685000 -141597489 + AluJo SINE Alu 1 304 -8 461 238 89 83 chr12 2685000 2685079 -141597410 - MIR SINE MIR -91 171 94 182 374 12 0 chr12 2685842 2685925 -141596564 + L2 LINE L2 3189 3272 0 1288 136 189 12 chr12 2687645 2687888 -141594601 + AluJo SINE Alu 1 286 -26 657 264 88 0 chr12 2688516 2688709 -141593780 - MIR SINE MIR -45 217 8 200 111 28 0 chr12 2690387 2690423 -141592066 + CT-rich Low_complexity Low_complexity 3 39 0 195 198 11 44 chr12 2693171 2693262 -141589227 + T-rich Low_complexity Low_complexity 2 89 0 215 298 0 40 chr12 2693466 2693590 -141588899 + T-rich Low_complexity Low_complexity 1 119 0 486 172 0 0 chr12 2694812 2694911 -141587578 + (TG)n Simple_repeat Simple_repeat 1 99 0 207 279 78 47 chr12 2695526 2695655 -141586834 - MIR SINE MIR -53 209 77 1008 279 147 44 chr12 2697014 2698050 -141584439 - L2 LINE L2 -2 3311 2104 305 294 154 7 chr12 2698524 2698667 -141583822 + MIR3 SINE MIR 38 201 -7 314 310 20 10 chr12 2699164 2699264 -141583225 - MIR SINE MIR -63 145 45 192 323 54 11 chr12 2700282 2700375 -141582114 - MIR SINE MIR -66 142 46 28 29 0 0 chr12 2703481 2703516 -141578973 + AT_rich Low_complexity Low_complexity 1 35 0 209 56 0 28 chr12 2705279 2705315 -141577174 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 330 26 0 0 chr12 2705757 2705772 -141576717 + (GA)n Simple_repeat Simple_repeat 1 54 0 330 26 0 0 chr12 2705772 2705811 -141576678 + (GA)n Simple_repeat Simple_repeat 1 39 0 1952 134 0 50 chr12 2706861 2707182 -141575307 + AluJo SINE Alu 1 305 -7 201 231 0 0 chr12 2709787 2709826 -141572663 + C-rich Low_complexity Low_complexity 3 41 0 660 231 65 0 chr12 2712194 2712363 -141570126 - MIR SINE MIR -34 228 49 206 200 0 0 chr12 2713354 2713389 -141569100 + polypurine Low_complexity Low_complexity 1 35 0 271 281 48 0 chr12 2714550 2714634 -141567855 + MIR SINE MIR 62 148 -74 6564 135 27 9 chr12 2714712 2715879 -141566610 + L1 LINE L1 3732 4919 -1227 448 326 30 33 chr12 2715875 2716179 -141566310 + HAL1 LINE L1 1445 1747 -760 * 477 247 84 59 chr12 2716444 2716683 -141565806 + L1MDa LINE L1 2315 2559 -3981 351 328 139 14 chr12 2716690 2717367 -141565122 + L1MDa LINE L1 2567 3423 -3117 6193 122 81 31 chr12 2717367 2718540 -141563949 + Tigger3b DNA MER2_type 1 1231 0 351 328 139 14 chr12 2718540 2718914 -141563575 + L1MDa LINE L1 3423 3749 -2791 2349 96 0 0 chr12 2719563 2719855 -141562634 + AluSg SINE Alu 1 292 -18 1675 195 0 14 chr12 2719997 2720284 -141562205 + AluJo SINE Alu 3 285 -27 417 39 0 0 chr12 2720284 2720335 -141562154 + (CA)n Simple_repeat Simple_repeat 2 52 0 529 344 98 17 chr12 2720356 2720714 -141561775 + L1MDa LINE L1 3704 4090 -2450 416 345 58 9 chr12 2720697 2720920 -141561569 + L1MDa LINE L1 4545 4778 -1762 * 506 324 100 28 chr12 2720906 2720980 -141561509 + L1ME4a LINE L1 4475 4542 -1998 2347 106 0 0 chr12 2720980 2721291 -141561198 + AluY SINE Alu 1 311 0 506 324 100 28 chr12 2721291 2721506 -141560983 + L1ME4a LINE L1 4542 4785 -1755 1210 299 39 25 chr12 2721514 2722260 -141560229 + L1ME4a LINE L1 4891 5646 -894 1988 113 0 0 chr12 2722276 2722567 -141559922 + L1PB2 LINE L1 5429 5719 -432 786 134 140 23 chr12 2722565 2722736 -141559753 + L1PB2 LINE L1 5960 6150 -1 * 2695 43 3 0 chr12 2722755 2723059 -141559430 - AluY SINE Alu -6 305 1 413 315 148 19 chr12 2723066 2723659 -141558830 + L1ME4a LINE L1 5657 6326 -238 2087 150 3 0 chr12 2724927 2725227 -141557262 + AluSx SINE Alu 1 301 -11 198 175 25 0 chr12 2725917 2725957 -141556532 + MIR3 SINE MIR 165 205 -3 2483 103 66 15 chr12 2727471 2727878 -141554611 - MSTA LTR MaLR 0 428 1 1403 77 101 0 chr12 2728266 2728475 -141554014 + MER30 DNA MER1_type 1 230 0 369 312 98 0 chr12 2728732 2728905 -141553584 + MER91A DNA MER1_type 4 193 -3 401 308 24 35 chr12 2729029 2729198 -141553291 + MER5A DNA MER1_type 2 168 -21 234 329 20 34 chr12 2729065 2729214 -141553275 - MER5A DNA MER1_type -27 162 16 * 235 345 86 2 chr12 2729306 2729433 -141553056 + MIR SINE MIR 16 152 -56 2258 103 17 0 chr12 2729598 2729898 -141552591 + AluSg SINE Alu 1 305 -5 2349 96 0 0 chr12 2730039 2730332 -141552157 - AluSc SINE Alu -16 293 1 266 284 116 13 chr12 2730345 2730500 -141551989 + L1ME4a LINE L1 6326 6496 -19 1720 226 82 5 chr12 2731402 2731831 -141550658 - MLT1C LTR MaLR 0 467 6 237 185 111 0 chr12 2732063 2732117 -141550372 - MIR SINE MIR -201 61 2 996 218 223 47 chr12 2732147 2732213 -141550276 - MLT1E3 LTR MaLR -1 623 570 2277 93 34 0 chr12 2732213 2732504 -141549985 + AluSp SINE Alu 1 301 -12 996 218 223 47 chr12 2732504 2732846 -141549643 - MLT1E3 LTR MaLR -54 570 143 253 284 0 73 chr12 2733302 2733443 -141549046 + G-rich Low_complexity Low_complexity 1 130 0 754 209 115 13 chr12 2734107 2734341 -141548148 - MER20B DNA MER1_type 0 783 526 996 274 150 19 chr12 2734499 2734967 -141547522 - MER20B DNA MER1_type -253 530 2 337 316 184 0 chr12 2735024 2735160 -141547329 - MIR SINE MIR -56 206 46 404 276 164 51 chr12 2735734 2736009 -141546480 + L1MC4a LINE L1 5862 6167 -1641 559 265 12 35 chr12 2737244 2737414 -141545075 + Charlie8 DNA MER1_type 115 280 -2137 303 242 0 0 chr12 2740313 2740375 -141542114 + MIR SINE MIR 195 256 -6 190 252 122 89 chr12 2741215 2741338 -141541151 - MIR SINE MIR -92 170 44 261 300 0 0 chr12 2741426 2741496 -141540993 + (TG)n Simple_repeat Simple_repeat 1 70 0 1356 78 16 3 chr12 2741870 2742615 -141539874 + (CA)n Simple_repeat Simple_repeat 1 754 0 3923 280 50 22 chr12 2742674 2744002 -141538487 + ERVL LTR ERVL 3074 4438 -1326 751 169 21 69 chr12 2744158 2744347 -141538142 + LTR41 LTR ERVL 1 180 -593 394 227 171 11 chr12 2744558 2744734 -141537755 + LTR50 LTR ERVL 590 793 -2 183 239 130 0 chr12 2744751 2744797 -141537692 + L2 LINE L2 2928 2979 -334 281 277 0 15 chr12 2745120 2745185 -141537304 - L2 LINE L2 -11 3302 3239 241 328 74 25 chr12 2745345 2745467 -141537022 + MER91A DNA MER1_type 1 128 -68 1802 256 67 53 chr12 2745839 2746057 -141536432 - MLT1E LTR MaLR 0 593 379 2026 116 7 7 chr12 2746057 2746350 -141536139 + AluSq SINE Alu 1 293 -20 1802 256 67 53 chr12 2746350 2746716 -141535773 - MLT1E LTR MaLR -214 379 1 183 263 35 18 chr12 2746949 2747006 -141535483 - L3b LINE CR1 -185 1398 1341 808 107 43 11 chr12 2748374 2748825 -141533664 + (CA)n Simple_repeat Simple_repeat 1 465 0 292 284 26 17 chr12 2748885 2749001 -141533488 + MER112 DNA MER1_type 1 117 -143 369 336 37 29 chr12 2749075 2749319 -141533170 - MER112 DNA MER1_type -7 253 8 213 311 0 40 chr12 2749420 2749494 -141532995 - MIR SINE MIR -81 181 111 240 262 0 0 chr12 2750183 2750242 -141532247 + MIR SINE MIR 94 153 -55 2289 83 3 0 chr12 2753460 2753760 -141528729 - AluSp SINE Alu -12 301 1 192 118 29 29 chr12 2754016 2754050 -141528439 + L3b LINE CR1 1293 1326 -257 292 198 430 0 chr12 2755020 2755141 -141527348 - MER5B DNA MER1_type -4 174 2 909 274 177 25 chr12 2755142 2755628 -141526861 + L3 LINE CR1 1010 1569 -8 652 235 88 14 chr12 2755643 2755860 -141526629 - L2 LINE L2 -3 3310 3078 1542 183 3 13 chr12 2756248 2756554 -141525935 - AluJo SINE Alu -9 303 1 23 33 0 0 chr12 2757381 2757411 -141525078 + GC_rich Low_complexity Low_complexity 1 30 0 1446 123 18 31 chr12 2764375 2764603 -141517886 + L1M4c LINE L1 19 243 -6141 3861 160 54 9 chr12 2764734 2765434 -141517055 + L1M4c LINE L1 249 980 -5404 * 45728 32 3 1 chr12 2765419 2771564 -141510925 + L1PA4 LINE L1 2 6155 0 10623 203 30 12 chr12 2771577 2775830 -141506659 + L1M4c LINE L1 947 5282 -1100 838 122 0 8 chr12 2775825 2775956 -141506533 + L1MB3 LINE L1 5818 5947 -224 * 501 145 226 8 chr12 2775963 2776087 -141506402 + L1MB3 LINE L1 6032 6182 -1 403 307 6 61 chr12 2777417 2777881 -141504608 + MER5A DNA MER1_type 8 161 -28 2173 109 0 0 chr12 2777459 2777761 -141504728 + AluSg SINE Alu 1 302 -8 200 300 87 47 chr12 2777761 2777903 -141504586 - MER5B DNA MER1_type -27 151 1 734 289 32 40 chr12 2778934 2779211 -141503278 + L2 LINE L2 2635 2909 -405 679 228 23 84 chr12 2779229 2779444 -141503045 + LTR41 LTR ERVL 1 202 -571 387 221 154 40 chr12 2779726 2779875 -141502614 + LTR41 LTR ERVL 605 770 -3 473 362 22 13 chr12 2780275 2780504 -141501985 + ERVL LTR ERVL 461 691 -5073 204 125 0 0 chr12 2780729 2780761 -141501728 + (TG)n Simple_repeat Simple_repeat 1 32 0 2014 146 50 20 chr12 2780776 2780826 -141501663 + THE1C LTR MaLR 8 55 -320 2293 83 0 3 chr12 2780826 2781128 -141501361 - AluSq SINE Alu -12 301 1 2014 146 50 20 chr12 2781128 2781434 -141501055 + THE1C LTR MaLR 55 375 0 235 250 0 29 chr12 2781434 2781502 -141500987 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 5921 196 21 114 chr12 2781503 2782298 -141500191 + L1 LINE L1 2679 3547 -2599 2211 102 0 0 chr12 2782298 2782593 -141499896 + AluSg SINE Alu 3 297 -13 5921 196 21 114 chr12 2782593 2783087 -141499402 + L1 LINE L1 3547 4086 -2060 1063 153 0 0 chr12 2783087 2783257 -141499232 + AluSg/x SINE Alu 135 304 -8 5921 196 21 114 chr12 2783257 2783766 -141498723 + L1 LINE L1 4086 4462 -1684 4218 142 41 1 chr12 2783766 2784476 -141498013 + L1PA16 LINE L1 5412 6149 -17 5921 196 21 114 chr12 2784476 2784493 -141497996 + L1 LINE L1 4462 4479 -1667 3638 321 40 7 chr12 2784523 2785708 -141496781 + ERVL LTR ERVL 1758 2985 -2779 951 117 0 0 chr12 2785708 2785888 -141496601 + (CA)n Simple_repeat Simple_repeat 1 180 0 3638 321 40 7 chr12 2785888 2785906 -141496583 + ERVL LTR ERVL 2985 3001 -2763 924 135 0 0 chr12 2785906 2786354 -141496135 + (CA)n Simple_repeat Simple_repeat 1 448 0 377 88 0 15 chr12 2786367 2786435 -141496054 + (CA)n Simple_repeat Simple_repeat 2 68 0 335 266 175 28 chr12 2787051 2787194 -141495295 + MIR3 SINE MIR 38 201 -7 1352 142 145 14 chr12 2988020 2988309 -141294180 - L1 LINE L1 -2363 3783 3457 257 298 11 43 chr12 2988317 2988411 -141294078 + L2 LINE L2 3000 3090 -182 704 232 24 68 chr12 2988587 2988794 -141293695 - MER58A DNA MER1_type 0 224 27 1330 178 22 0 chr12 2988814 2989083 -141293406 + L1MA4 LINE L1 6016 6290 -10 23 0 0 0 chr12 2989083 2989106 -141293383 + AT_rich Low_complexity Low_complexity 1 23 0 259 256 79 43 chr12 2989244 2989408 -141293081 + L1ME4a LINE L1 5935 6104 -17 810 111 8 0 chr12 2989825 2989942 -141292547 + FLAM_C SINE Alu 1 118 -15 2342 83 3 0 chr12 2989979 2990268 -141292221 + AluY SINE Alu 1 290 -21 942 57 0 0 chr12 2990276 2990398 -141292091 + HERVK9 LTR ERVK 5634 5755 -161 1046 59 15 0 chr12 2990399 2990534 -141291955 - MER9 LTR ERVK -374 137 1 476 172 108 0 chr12 2990535 2990628 -141291861 - AluSg SINE Alu -206 104 2 1017 214 10 0 chr12 2990630 2990836 -141291653 + L1MB8 LINE L1 5354 5561 -617 986 68 7 103 chr12 2990836 2990982 -141291507 + AluSq/x SINE Alu 1 132 -180 1264 105 6 0 chr12 2991515 2991701 -141290788 + AluSp SINE Alu 121 307 0 2421 199 38 25 chr12 2991701 2992260 -141290229 + L1MB8 LINE L1 5554 6119 -59 1282 182 0 0 chr12 2992262 2992471 -141290018 + AluJo SINE Alu 7 215 -97 2048 120 18 0 chr12 2992713 2992997 -141289492 - AluSx SINE Alu -23 289 1 577 216 8 24 chr12 2993796 2993921 -141288568 + MER2 DNA MER2_type 1 123 -222 3261 92 6 32 chr12 2994137 2994639 -141287850 - LTR22B LTR ERVK -3 489 1 207 0 0 0 chr12 2995230 2995253 -141287236 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2463 93 0 0 chr12 2995291 2995591 -141286898 + AluSp SINE Alu 1 300 -13 420 234 0 43 chr12 2995891 2995985 -141286504 - L1MC4 LINE L1 -1339 6703 6614 329 275 25 0 chr12 2995929 2996009 -141286480 + L1MC3 LINE L1 6571 6652 -1133 * 2169 115 7 0 chr12 2996085 2996373 -141286116 + AluSx SINE Alu 1 290 -22 2740 264 39 11 chr12 2996674 2996734 -141285755 + L1ME3 LINE L1 5173 5230 -932 243 0 0 0 chr12 2996734 2996761 -141285728 + (TG)n Simple_repeat Simple_repeat 2 28 0 2740 264 39 11 chr12 2996761 2996823 -141285666 + L1ME3 LINE L1 5230 5289 -873 2567 73 0 10 chr12 2996823 2997137 -141285352 - AluSx SINE Alu -1 311 1 2740 264 39 11 chr12 2997137 2997941 -141284548 + L1ME3 LINE L1 5289 6131 -31 245 227 82 41 chr12 2998108 2998205 -141284284 + L2 LINE L2 3198 3298 -15 928 128 0 0 chr12 2999066 2999191 -141283298 - FLAM_C SINE Alu -18 125 1 2021 134 14 7 chr12 2999744 3000036 -141282453 + AluJb SINE Alu 3 296 -16 332 292 129 67 chr12 3000102 3000149 -141282340 - MIR SINE MIR -29 233 190 1614 162 27 34 chr12 3000149 3000446 -141282043 + AluJb SINE Alu 2 296 -16 332 292 129 67 chr12 3000446 3000576 -141281913 - MIR SINE MIR -72 190 45 2588 71 0 0 chr12 3000750 3001061 -141281428 + AluY SINE Alu 1 311 0 272 329 87 14 chr12 3001986 3002193 -141280296 - MIR SINE MIR -35 227 6 1333 93 6 0 chr12 3002759 3002931 -141279558 + AluSq SINE Alu 1 173 -140 502 94 0 0 chr12 3002931 3003016 -141279473 + AluJ/FRAM SINE Alu 224 308 -4 192 276 92 13 chr12 3003054 3003130 -141279359 - L2 LINE L2 -4 3309 3228 186 43 0 0 chr12 3003885 3003908 -141278581 + (A)n Simple_repeat Simple_repeat 1 23 0 31 58 0 0 chr12 3004372 3004424 -141278065 + GC_rich Low_complexity Low_complexity 1 52 0 30 93 0 0 chr12 3004631 3004717 -141277772 + GC_rich Low_complexity Low_complexity 1 86 0 28 61 0 0 chr12 3004954 3005003 -141277486 + GC_rich Low_complexity Low_complexity 1 49 0 205 267 144 0 chr12 3005881 3005971 -141276518 - MIR SINE MIR -66 196 94 355 297 40 20 chr12 3007922 3008070 -141274419 + MIR3 SINE MIR 37 187 -21 180 297 55 55 chr12 3008583 3008711 -141273778 - L2 LINE L2 0 3272 3145 700 228 6 6 chr12 3010701 3010859 -141271630 + FRAM SINE Alu 1 158 -18 386 319 32 27 chr12 3011029 3011214 -141271275 - L1MC4a LINE L1 -1871 5937 5752 2319 100 13 0 chr12 3011227 3011527 -141270962 - AluSq SINE Alu -9 304 1 367 191 142 53 chr12 3011549 3011758 -141270731 - Charlie5 DNA MER1_type -27 2585 3 2018 152 0 7 chr12 3011819 3012121 -141270368 - AluJb SINE Alu -12 300 1 437 216 0 39 chr12 3013916 3014018 -141268471 + AluJb SINE Alu 191 288 -24 334 286 71 26 chr12 3014136 3014290 -141268199 - MIR SINE MIR 0 262 102 244 185 283 22 chr12 3014335 3014427 -141268062 + MIR3 SINE MIR 90 205 -3 215 295 186 38 chr12 3014791 3015028 -141267461 + L2 LINE L2 2546 2817 -497 945 162 6 39 chr12 3015519 3015533 -141266956 - AluJb SINE Alu -3 309 296 2250 123 10 0 chr12 3015533 3015835 -141266654 - AluSx SINE Alu -7 305 1 945 162 6 39 chr12 3015835 3015849 -141266640 - AluJb SINE Alu -16 296 283 213 65 0 0 chr12 3015849 3015880 -141266609 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 945 162 6 39 chr12 3015880 3016029 -141266460 - AluJb SINE Alu -29 283 137 2243 124 0 0 chr12 3016029 3016328 -141266161 - AluSq SINE Alu -14 299 1 310 183 157 78 chr12 3016516 3016631 -141265858 - L1MB5 LINE L1 -9 6165 6042 2416 83 0 32 chr12 3017137 3017451 -141265038 + AluY SINE Alu 1 304 -7 1996 96 37 0 chr12 3017921 3018191 -141264298 + AluSq SINE Alu 21 300 -13 2456 88 3 0 chr12 3018191 3018496 -141263993 + AluY SINE Alu 1 306 -5 2364 94 7 10 chr12 3018749 3019058 -141263431 + AluSg SINE Alu 1 308 -2 1904 178 7 0 chr12 3019075 3019378 -141263111 - AluSx SINE Alu -7 305 1 832 153 108 0 chr12 3019821 3019978 -141262511 + AluSg/x SINE Alu 136 309 -3 2466 65 0 46 chr12 3019980 3020121 -141262368 + AluSc SINE Alu 1 147 -162 2447 58 0 3 chr12 3020121 3020414 -141262075 + AluY SINE Alu 1 292 -19 207 0 0 0 chr12 3020414 3020437 -141262052 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2466 65 0 46 chr12 3020437 3020618 -141261871 + AluSc SINE Alu 145 309 0 530 194 114 55 chr12 3021186 3021423 -141261066 + MER112 DNA MER1_type 3 253 -7 1478 108 10 0 chr12 3022135 3022339 -141260150 - AluSg/x SINE Alu -15 295 90 277 122 0 0 chr12 3022339 3022380 -141260109 - Alu SINE Alu -261 41 1 290 230 0 27 chr12 3022391 3022465 -141260024 + MIR SINE MIR 184 255 -7 281 348 51 8 chr12 3022491 3022609 -141259880 - L2 LINE L2 0 3272 3150 1827 180 0 3 chr12 3023038 3023338 -141259151 - AluJo SINE Alu -13 299 1 286 269 55 71 chr12 3023500 3023641 -141258848 + L2 LINE L2 3130 3269 -44 2119 157 0 6 chr12 3023641 3023954 -141258535 + AluJb SINE Alu 1 311 -1 286 269 55 71 chr12 3023954 3023994 -141258495 + L2 LINE L2 3269 3308 -5 1174 102 0 30 chr12 3024070 3024236 -141258253 - AluSq SINE Alu -16 297 137 1788 170 0 50 chr12 3024957 3025125 -141257364 - AluJo SINE Alu -11 301 126 2436 87 3 0 chr12 3025125 3025424 -141257065 - AluSx SINE Alu -12 300 1 2525 81 0 0 chr12 3025424 3025722 -141256767 - AluY SINE Alu -13 298 1 2049 151 0 22 chr12 3025722 3026039 -141256450 - AluJb SINE Alu -2 310 1 1788 170 0 50 chr12 3026039 3026185 -141256304 - AluJo SINE Alu -183 129 1 323 339 9 9 chr12 3027465 3027580 -141254909 - L2 LINE L2 0 3313 3199 746 214 37 21 chr12 3027590 3027777 -141254712 + AluJo SINE Alu 118 307 -5 2048 138 24 0 chr12 3027829 3028125 -141254364 + AluSq SINE Alu 1 303 -10 2002 121 13 49 chr12 3028129 3028276 -141254213 + AluSx SINE Alu 1 133 -179 2400 77 0 13 chr12 3028276 3028575 -141253914 + AluY SINE Alu 1 295 -16 2002 121 13 49 chr12 3028575 3028733 -141253756 + AluSx SINE Alu 133 295 -17 267 279 54 0 chr12 3028737 3028848 -141253641 - L2 LINE L2 -175 3138 3022 203 103 26 0 chr12 3029711 3029750 -141252739 + C-rich Low_complexity Low_complexity 2 41 0 1676 191 30 10 chr12 3031011 3031315 -141251174 - AluJo SINE Alu -2 310 1 469 245 129 0 chr12 3031622 3031761 -141250728 + MIR SINE MIR 36 192 -70 692 182 186 23 chr12 3034070 3034290 -141248199 - MER112 DNA MER1_type 0 256 1 2011 163 0 3 chr12 3034857 3035157 -141247332 - AluSx SINE Alu -13 299 1 424 136 0 0 chr12 3037331 3037397 -141245092 - L1MB7 LINE L1 -98 6086 6021 2430 76 3 10 chr12 3037651 3037952 -141244537 + AluSp SINE Alu 1 299 -14 829 146 51 22 chr12 3038018 3038155 -141244334 + FLAM_C SINE Alu 1 141 -2 1646 167 41 31 chr12 3038583 3038876 -141243613 + AluJb SINE Alu 3 298 -14 2232 105 3 0 chr12 3038893 3039178 -141243311 + AluSx SINE Alu 5 290 -22 230 262 71 56 chr12 3039251 3039377 -141243112 - L2 LINE L2 -213 3059 2932 2218 147 0 0 chr12 3040395 3040702 -141241787 + AluSx SINE Alu 1 307 -5 204 192 0 58 chr12 3040822 3040856 -141241633 + CT-rich Low_complexity Low_complexity 4 36 -16 638 241 0 0 chr12 3040856 3040989 -141241500 - FLAM_A SINE Alu 0 133 1 204 192 0 58 chr12 3040989 3041006 -141241483 + CT-rich Low_complexity Low_complexity 36 52 0 401 250 264 0 chr12 3041149 3041289 -141241200 + MER5A DNA MER1_type 11 187 -2 256 293 151 82 chr12 3041644 3041876 -141240613 + L2 LINE L2 3023 3270 -2 804 221 103 0 chr12 3042826 3043039 -141239450 - MIR SINE MIR 0 262 28 294 29 0 0 chr12 3044250 3044285 -141238204 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 103 0 0 chr12 3044285 3044314 -141238175 + (GA)n Simple_repeat Simple_repeat 2 30 0 821 265 108 42 chr12 3044971 3045379 -141237110 - L1ME3A LINE L1 -260 5910 5476 2137 182 44 22 chr12 3045675 3046132 -141236357 + MLT1C LTR MaLR 1 467 0 2272 93 0 52 chr12 3046149 3046289 -141236200 + AluSq SINE Alu 7 153 -160 2595 34 0 3 chr12 3046289 3046581 -141235908 + AluY SINE Alu 1 291 -20 2272 93 0 52 chr12 3046581 3046764 -141235725 + AluSq SINE Alu 153 313 0 1205 144 0 0 chr12 3046768 3046935 -141235554 + FRAM SINE Alu 1 159 -17 2097 141 3 0 chr12 3048103 3048393 -141234096 + AluSx SINE Alu 1 291 -21 737 212 71 16 chr12 3048657 3048841 -141233648 - L2 LINE L2 -1 3312 3119 1959 169 19 0 chr12 3048841 3049213 -141233276 + L1PA16 LINE L1 5787 6165 -1 235 191 21 149 chr12 3049214 3049260 -141233229 + L1M4 LINE L1 4505 4555 -1591 2270 92 0 23 chr12 3049260 3049563 -141232926 + AluSx SINE Alu 1 296 -16 235 191 21 149 chr12 3049563 3049614 -141232875 + L1M4 LINE L1 4555 4581 -1565 2418 60 0 0 chr12 3049614 3049896 -141232593 + AluY SINE Alu 17 298 -13 235 191 21 149 chr12 3049896 3049938 -141232551 + L1M4 LINE L1 4581 4627 -1519 820 160 33 149 chr12 3050637 3050813 -141231676 + MER33 DNA MER1_type 5 200 -2385 2346 91 0 3 chr12 3050813 3051110 -141231379 - AluSc SINE Alu -13 296 1 820 160 33 149 chr12 3051110 3051207 -141231282 + MER33 DNA MER1_type 200 307 -2278 2394 94 0 7 chr12 3051207 3051514 -141230975 - AluSc SINE Alu -4 305 1 820 160 33 149 chr12 3051514 3051553 -141230936 + MER33 DNA MER1_type 307 274 -2311 1802 158 34 0 chr12 3051553 3051844 -141230645 + AluJb SINE Alu 1 301 -11 820 160 33 149 chr12 3051844 3051891 -141230598 + MER33 DNA MER1_type 273 324 0 367 339 103 21 chr12 3051895 3052128 -141230361 - L3b LINE CR1 -140 1443 1192 233 298 18 0 chr12 3052495 3052552 -141229937 - MIR SINE MIR -109 153 96 2316 106 0 0 chr12 3052624 3052917 -141229572 + AluSx SINE Alu 1 293 -19 423 260 63 8 chr12 3052918 3053045 -141229444 + MIR SINE MIR 59 192 -70 1861 139 27 14 chr12 3053071 3053365 -141229124 + AluJb SINE Alu 1 298 -14 2032 154 0 0 chr12 3053365 3053657 -141228832 + AluSx SINE Alu 1 292 -20 816 154 0 0 chr12 3054962 3055092 -141227397 - FLAM_A SINE Alu -1 132 3 350 281 50 0 chr12 3055598 3055719 -141226770 + MIR3 SINE MIR 78 204 -4 923 208 60 1 chr12 3055978 3056277 -141226212 - L1MB7 LINE L1 -2 6169 5833 1711 153 5 83 chr12 3056291 3056470 -141226019 - L1MB4 LINE L1 -2 6178 5986 2279 76 10 30 chr12 3056470 3056774 -141225715 + AluY SINE Alu 1 298 -13 1711 153 5 83 chr12 3056774 3057013 -141225476 - L1MB4 LINE L1 -194 5986 5793 359 272 53 27 chr12 3057054 3057260 -141225229 - MIR SINE MIR -12 250 33 396 40 0 0 chr12 3057956 3058006 -141224483 + (CA)n Simple_repeat Simple_repeat 2 51 0 265 250 68 119 chr12 3059148 3059287 -141223202 - MER5B DNA MER1_type 0 178 48 2359 83 7 13 chr12 3059287 3059589 -141222900 + AluSg SINE Alu 1 300 -10 265 250 68 119 chr12 3059589 3059625 -141222864 - MER5B DNA MER1_type -130 48 12 2165 107 7 4 chr12 3059747 3060065 -141222424 - AluSx SINE Alu 0 319 1 216 0 0 0 chr12 3060072 3060096 -141222393 + (T)n Simple_repeat Simple_repeat 1 24 0 1146 108 25 0 chr12 3060111 3060268 -141222221 + AluSp SINE Alu 134 294 -19 1130 126 133 96 chr12 3060283 3060331 -141222158 - MER7C DNA MER2_type -2723 305 260 218 81 27 0 chr12 3060331 3060368 -141222121 + (TGAG)n Simple_repeat Simple_repeat 1 38 0 1130 126 133 96 chr12 3060368 3060437 -141222052 - MER7C DNA MER2_type -2768 260 195 2096 127 0 3 chr12 3060437 3060736 -141221753 - AluSx SINE Alu -14 298 1 195 48 48 24 chr12 3060742 3060784 -141221705 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2193 114 0 0 chr12 3060791 3061072 -141221417 - AluSx SINE Alu -31 281 1 1130 126 133 96 chr12 3061072 3061231 -141221258 - MER7C DNA MER2_type -2842 186 2 249 298 12 0 chr12 3061298 3061382 -141221107 - L2 LINE L2 -51 3262 3178 321 192 70 109 chr12 3061450 3061463 -141221026 + MIR SINE MIR 80 92 -170 1765 169 14 7 chr12 3061463 3061758 -141220731 - AluJo SINE Alu -15 297 1 321 192 70 109 chr12 3061758 3061816 -141220673 + MIR SINE MIR 92 151 -111 2215 96 23 7 chr12 3061816 3062119 -141220370 + AluSx SINE Alu 1 308 -4 321 192 70 109 chr12 3062119 3062202 -141220287 + MIR SINE MIR 151 229 -33 2466 74 10 0 chr12 3062369 3062666 -141219823 - AluSq SINE Alu -13 300 1 306 67 0 0 chr12 3062671 3062716 -141219773 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 2227 99 3 0 chr12 3063124 3063418 -141219071 - AluSp SINE Alu -18 295 1 223 288 85 25 chr12 3063433 3063551 -141218938 - MIR SINE MIR -44 218 94 205 258 118 0 chr12 3063703 3063796 -141218693 + L2 LINE L2 3160 3263 -9 451 288 162 21 chr12 3065177 3065368 -141217121 - MIR SINE MIR -43 219 2 2206 103 10 3 chr12 3065464 3065756 -141216733 - AluSq SINE Alu -19 294 1 489 348 14 43 chr12 3068963 3069042 -141213447 + L1ME4a LINE L1 4932 5012 -1134 431 134 134 0 chr12 3069042 3069124 -141213365 + HY4 scRNA scRNA 1 93 0 489 348 14 43 chr12 3069124 3069326 -141213163 + L1ME4a LINE L1 5012 5205 -941 1364 183 77 18 chr12 3069332 3069605 -141212884 + AluJb SINE Alu 19 307 -5 2292 84 31 0 chr12 3069685 3069972 -141212517 + AluSx SINE Alu 1 296 -16 2430 81 0 3 chr12 3069980 3070276 -141212213 + AluSg SINE Alu 1 295 -15 718 318 65 31 chr12 3070297 3070425 -141212064 + L1ME4a LINE L1 5305 5427 -735 701 72 0 0 chr12 3070425 3070522 -141211967 + L1PB1 LINE L1 6054 6150 -1 718 318 65 31 chr12 3070522 3070992 -141211497 + L1ME4a LINE L1 5427 5887 -275 2440 93 0 0 chr12 3070992 3071292 -141211197 + AluSg SINE Alu 1 300 -10 718 318 65 31 chr12 3071292 3071329 -141211160 + L1ME4a LINE L1 5887 5921 -241 23 39 0 39 chr12 3071611 3071635 -141210854 + AT_rich Low_complexity Low_complexity 1 24 -26 1679 187 0 37 chr12 3071635 3071935 -141210554 - AluJo SINE Alu -23 289 1 23 39 0 39 chr12 3071935 3071962 -141210527 + AT_rich Low_complexity Low_complexity 24 50 0 902 171 51 37 chr12 3072154 3072370 -141210119 + MER20 DNA MER1_type 1 219 0 1829 157 10 23 chr12 3072483 3072788 -141209701 - AluJo SINE Alu -11 301 1 2290 93 20 3 chr12 3072798 3073098 -141209391 - AluSg SINE Alu -5 305 1 2537 88 0 0 chr12 3074737 3075045 -141207444 - AluSp SINE Alu -4 309 2 363 294 52 15 chr12 3075071 3075207 -141207282 - MER5A DNA MER1_type -6 183 43 * 511 282 20 13 chr12 3075089 3075238 -141207251 + MER5A DNA MER1_type 40 189 0 2179 137 0 0 chr12 3075964 3076264 -141206225 + AluSx SINE Alu 1 300 -12 1299 169 118 32 chr12 3076276 3076555 -141205934 + AluJb SINE Alu 1 303 -9 1495 36 0 0 chr12 3076604 3076769 -141205720 + AluY SINE Alu 131 295 -16 2430 84 3 16 chr12 3076787 3077097 -141205392 + AluSx SINE Alu 1 306 -6 243 246 53 0 chr12 3077982 3078039 -141204450 - MIR3 SINE MIR -3 205 146 184 320 0 0 chr12 3078196 3078246 -141204243 + MIR SINE MIR 37 86 -122 1732 154 3 63 chr12 3078364 3078530 -141203959 - AluJb SINE Alu -13 299 159 2370 94 3 7 chr12 3078530 3078829 -141203660 - AluSq SINE Alu -14 299 2 1732 154 3 63 chr12 3078829 3078980 -141203509 - AluJb SINE Alu -153 159 1 332 225 67 34 chr12 3078989 3079078 -141203411 - L1ME3 LINE L1 -1 6161 6070 1992 138 52 0 chr12 3079079 3079369 -141203120 - AluSp SINE Alu -8 305 1 1874 120 3 46 chr12 3079393 3079476 -141203013 + L1PA15 LINE L1 5854 5939 -226 2366 88 0 0 chr12 3079476 3079770 -141202719 + AluSc SINE Alu 1 294 -15 2371 92 3 0 chr12 3079772 3080076 -141202413 + AluSg SINE Alu 1 305 -5 1874 120 3 46 chr12 3080076 3080315 -141202174 + L1PA15 LINE L1 5940 6165 0 2021 124 7 20 chr12 3080459 3080757 -141201732 + AluJb SINE Alu 1 294 -18 188 320 98 52 chr12 3080911 3081064 -141201425 - L2 LINE L2 -15 3257 3098 2264 106 30 0 chr12 3081421 3081722 -141200767 + AluSx SINE Alu 1 310 -2 1253 182 0 10 chr12 3081948 3082157 -141200332 + AluJo SINE Alu 86 292 -20 2383 112 0 3 chr12 3082209 3082521 -141199968 + AluSx SINE Alu 1 311 -1 667 167 0 0 chr12 3082525 3082639 -141199850 + FLAM_C SINE Alu 2 115 -18 2243 101 13 7 chr12 3082663 3082971 -141199518 - AluSx SINE Alu -2 310 1 2467 97 0 0 chr12 3084076 3084386 -141198103 - AluSx SINE Alu -2 310 1 360 174 14 0 chr12 3084535 3084604 -141197885 - MER91C DNA MER1_type -8 132 63 1828 91 20 20 chr12 3084845 3085097 -141197392 - AluSq SINE Alu -4 309 58 1966 81 18 15 chr12 3135097 3135369 -141147120 - AluSq SINE Alu -40 273 1 22 88 0 0 chr12 3136309 3136366 -141146123 + GC_rich Low_complexity Low_complexity 1 57 0 358 243 72 79 chr12 3137046 3137198 -141145291 - L2 LINE L2 0 3272 3122 1806 133 31 0 chr12 3137207 3137493 -141144996 + AluJb SINE Alu 1 295 -17 329 296 124 94 chr12 3137646 3138244 -141144245 - L2 LINE L2 -350 2964 2349 1725 187 0 13 chr12 3138297 3138612 -141143877 - AluJb SINE Alu -1 311 1 1881 150 0 7 chr12 3138636 3138942 -141143547 - AluJb SINE Alu -8 304 1 255 339 94 12 chr12 3138942 3139113 -141143376 - L2 LINE L2 -964 2350 2166 300 276 140 83 chr12 3139114 3139342 -141143147 - L2 LINE L2 -1737 1577 1363 1526 163 71 27 chr12 3139342 3139637 -141142852 + AluJo SINE Alu 1 308 -4 2125 95 14 3 chr12 3139643 3139939 -141142550 + AluSx SINE Alu 1 299 -13 1741 166 7 17 chr12 3139946 3140247 -141142242 - AluJo SINE Alu -14 298 1 300 276 140 83 chr12 3140247 3140361 -141142128 - L2 LINE L2 -1960 1354 1213 2078 120 0 0 chr12 3140410 3140711 -141141778 - AluSx SINE Alu -11 301 1 651 228 37 15 chr12 3140722 3140858 -141141631 + L2 LINE L2 3175 3313 0 2211 105 7 0 chr12 3140933 3141237 -141141252 + AluSg SINE Alu 1 306 -4 210 243 54 40 chr12 3141387 3141461 -141141028 + L2 LINE L2 1820 1894 -1420 806 134 0 0 chr12 3141468 3141587 -141140902 + FLAM_C SINE Alu 1 119 -24 342 0 0 0 chr12 3141587 3141625 -141140864 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1776 155 0 13 chr12 3141725 3142035 -141140454 + AluSx SINE Alu 1 306 -6 203 283 0 0 chr12 3142062 3142108 -141140381 - L2 LINE L2 -239 3074 3029 1525 177 3 25 chr12 3142111 3142394 -141140095 + AluJo SINE Alu 25 301 -11 1715 172 14 0 chr12 3142409 3142705 -141139784 + AluJb SINE Alu 5 304 -8 324 0 0 0 chr12 3142785 3142821 -141139668 + (TA)n Simple_repeat Simple_repeat 2 37 0 2456 50 7 0 chr12 3142821 3143124 -141139365 - AluSp SINE Alu -8 305 1 462 272 20 20 chr12 3143130 3143277 -141139212 + L1MC5 LINE L1 7763 7909 -52 189 74 0 0 chr12 3143359 3143386 -141139103 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1989 93 3 34 chr12 3143388 3143541 -141138948 - AluSx SINE Alu -30 282 126 180 0 0 0 chr12 3143541 3143561 -141138928 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1829 131 25 0 chr12 3143561 3143835 -141138654 - AluSx SINE Alu -31 281 1 1989 93 3 34 chr12 3143835 3143971 -141138518 - AluSx SINE Alu -184 128 1 344 308 156 113 chr12 3144017 3144433 -141138056 + L2 LINE L2 2836 3269 -3 2558 48 0 3 chr12 3144871 3145183 -141137306 - AluY SINE Alu 0 311 1 2040 127 3 19 chr12 3145677 3145992 -141136497 + AluJb SINE Alu 1 310 -2 207 314 0 0 chr12 3146175 3146226 -141136263 - MIR SINE MIR 0 262 212 411 194 86 11 chr12 3146258 3146351 -141136138 - L2 LINE L2 -18 3254 3155 1828 157 3 7 chr12 3146369 3146504 -141135985 + AluSx SINE Alu 1 135 -177 2013 134 3 0 chr12 3146504 3146809 -141135680 + AluSq SINE Alu 1 306 -7 1828 157 3 7 chr12 3146809 3146972 -141135517 + AluSx SINE Alu 135 298 -14 290 241 17 0 chr12 3147012 3147070 -141135419 - MIR SINE MIR -60 148 90 1707 129 4 7 chr12 3147837 3148108 -141134381 - AluSq SINE Alu -13 300 31 193 224 233 17 chr12 3148865 3148981 -141133508 - MIR SINE MIR -88 174 34 1734 124 7 7 chr12 3149271 3149546 -141132943 + AluSx SINE Alu 14 288 -24 1221 165 30 66 chr12 3151079 3151203 -141131286 + AluJo SINE Alu 1 128 -184 180 0 0 0 chr12 3151203 3151223 -141131266 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1221 165 30 66 chr12 3151223 3151401 -141131088 + AluJo SINE Alu 128 292 -20 2293 83 0 0 chr12 3151817 3152118 -141130371 - AluSc SINE Alu -8 301 1 1546 163 29 10 chr12 3152165 3152471 -141130018 - AluJb SINE Alu 0 312 1 2014 92 28 0 chr12 3152636 3152919 -141129570 - AluSp SINE Alu -12 301 11 901 126 7 0 chr12 3153117 3153252 -141129237 - AluJo SINE Alu -176 136 1 1807 112 3 70 chr12 3153540 3153847 -141128642 + AluSx SINE Alu 1 287 -20 309 51 0 0 chr12 3153847 3153886 -141128603 + (CA)n Simple_repeat Simple_repeat 2 40 0 1888 139 0 4 chr12 3153922 3154228 -141128261 + AluSg SINE Alu 1 305 0 1736 150 64 27 chr12 3155001 3155252 -141127237 - MER7A DNA MER2_type -2692 346 81 2167 105 3 3 chr12 3155252 3155548 -141126941 - AluSx SINE Alu -16 296 1 1736 150 64 27 chr12 3155548 3155626 -141126863 - MER7A DNA MER2_type -2957 81 7 209 146 91 73 chr12 3156002 3156057 -141126432 - MIR SINE MIR -85 177 122 187 278 62 104 chr12 3156104 3156248 -141126241 + MIR SINE MIR 112 249 -13 1992 108 17 3 chr12 3156330 3156618 -141125871 - AluSx SINE Alu -20 292 1 682 149 0 50 chr12 3156793 3156914 -141125575 + FLAM_C SINE Alu 3 117 -16 651 195 47 8 chr12 3156936 3157064 -141125425 - FLAM_C SINE Alu 0 133 1 244 28 0 0 chr12 3157064 3157100 -141125389 + Alu SINE Alu 285 320 0 2106 106 3 3 chr12 3157105 3157407 -141125082 + AluSq SINE Alu 1 302 -11 370 281 26 26 chr12 3157426 3157540 -141124949 - MIR SINE MIR -47 215 102 718 181 0 15 chr12 3157639 3157772 -141124717 - FLAM_A SINE Alu -11 131 1 780 198 47 41 chr12 3157779 3157951 -141124538 - MER58B DNA MER1_type -14 327 155 1622 156 11 0 chr12 3158010 3158285 -141124204 - AluJo SINE Alu -32 280 3 735 144 40 87 chr12 3158286 3158372 -141124117 - MER58B DNA MER1_type -176 165 89 2228 86 3 0 chr12 3158372 3158673 -141123816 + AluSp SINE Alu 1 302 -11 735 144 40 87 chr12 3158673 3158759 -141123730 - MER58B DNA MER1_type -252 89 1 2461 71 0 0 chr12 3158920 3159231 -141123258 + AluY SINE Alu 1 311 0 1848 121 10 33 chr12 3159244 3159549 -141122940 + AluSx SINE Alu 4 301 -11 1396 161 74 18 chr12 3160030 3160315 -141122174 - AluJb SINE Alu -11 301 1 446 209 0 0 chr12 3160318 3160409 -141122080 - L1ME LINE L1 -727 5437 5347 948 133 42 6 chr12 3160435 3160600 -141121889 - AluJb SINE Alu -22 290 120 180 0 0 0 chr12 3160601 3160621 -141121868 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 263 120 0 40 chr12 3160621 3160671 -141121818 - FLAM_A SINE Alu 0 133 86 1934 126 0 3 chr12 3160682 3160991 -141121498 - AluSx SINE Alu 0 308 1 742 210 70 0 chr12 3160991 3161177 -141121312 - L1ME LINE L1 -821 5325 5127 2033 132 0 0 chr12 3162173 3162468 -141120021 - AluSx SINE Alu -15 297 3 869 210 46 67 chr12 3162570 3162589 -141119900 - L1MD3 LINE L1 0 8042 8024 2306 87 3 0 chr12 3162589 3162900 -141119589 + AluSp SINE Alu 1 312 -1 869 210 46 67 chr12 3162900 3163080 -141119409 - L1MD3 LINE L1 -18 8024 7832 2181 93 0 13 chr12 3163080 3163390 -141119099 - AluSg SINE Alu -4 306 1 869 210 46 67 chr12 3163390 3163527 -141118962 - L1MD3 LINE L1 -210 7832 7694 801 191 0 0 chr12 3163663 3163810 -141118679 - FRAM SINE Alu -29 147 1 1818 96 75 21 chr12 3164126 3164406 -141118083 + AluSx SINE Alu 1 295 -17 2278 88 0 0 chr12 3164496 3164792 -141117697 - AluSc SINE Alu -13 296 1 24 0 0 0 chr12 3164836 3164860 -141117629 + AT_rich Low_complexity Low_complexity 1 24 0 522 158 0 0 chr12 3165259 3165341 -141117148 + AluSg/x SINE Alu 209 290 -19 1983 113 3 3 chr12 3165341 3165633 -141116856 - AluSg SINE Alu -14 296 5 2041 112 3 13 chr12 3165633 3165937 -141116552 - AluSx SINE Alu -11 301 1 25 0 0 0 chr12 3165937 3165962 -141116527 + AT_rich Low_complexity Low_complexity 1 25 0 1942 95 0 18 chr12 3165964 3166263 -141116226 + AluSq SINE Alu 23 313 0 2076 114 0 10 chr12 3166364 3166499 -141115990 + AluSx SINE Alu 1 136 -176 1897 117 10 26 chr12 3166499 3166807 -141115682 + AluSc SINE Alu 1 303 -6 2076 114 0 10 chr12 3166807 3166970 -141115519 + AluSx SINE Alu 136 296 -16 1662 128 40 10 chr12 3167734 3168030 -141114459 - AluSg SINE Alu -5 305 1 21 0 0 0 chr12 3168318 3168339 -141114150 + AT_rich Low_complexity Low_complexity 1 21 0 387 349 27 7 chr12 3168416 3168562 -141113927 + MIR SINE MIR 109 257 -5 1920 71 68 11 chr12 3169319 3169599 -141112890 + AluY SINE Alu 1 296 -15 339 359 46 8 chr12 3169649 3169780 -141112709 + L2 LINE L2 3136 3271 -1 2215 68 0 42 chr12 3170665 3170973 -141111516 - AluY SINE Alu -16 295 1 387 0 0 0 chr12 3170973 3171016 -141111473 + (T)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr12 3171083 3171104 -141111385 + AT_rich Low_complexity Low_complexity 1 21 0 629 206 0 53 chr12 3171155 3171286 -141111203 + FLAM_A SINE Alu 5 128 -5 516 290 41 26 chr12 3171415 3171570 -141110919 + MIR3 SINE MIR 2 162 -46 697 62 21 0 chr12 3172275 3172371 -141110118 - AluSc SINE Alu -4 305 208 875 94 16 8 chr12 3172380 3172508 -141109981 - L1M4 LINE L1 -656 5522 5394 303 28 0 0 chr12 3172510 3172546 -141109943 + (TG)n Simple_repeat Simple_repeat 1 36 0 1679 166 0 50 chr12 3172552 3172872 -141109617 - AluJo SINE Alu -8 304 1 362 230 74 67 chr12 3172872 3172907 -141109582 - L1M4 LINE L1 -1109 5037 5004 2243 103 0 0 chr12 3172907 3173217 -141109272 - AluSg SINE Alu 0 310 1 362 230 74 67 chr12 3173217 3173236 -141109253 - L1M4 LINE L1 -1142 5004 4987 1417 94 18 101 chr12 3173236 3173431 -141109058 - L1MA4 LINE L1 -11 6289 6122 2286 93 3 0 chr12 3173431 3173732 -141108757 - AluSp SINE Alu -11 302 1 1417 94 18 101 chr12 3173732 3173812 -141108677 - L1MA4 LINE L1 -178 6122 6037 362 230 74 67 chr12 3173812 3173891 -141108598 - L1M4 LINE L1 -1159 4987 4902 1923 147 0 0 chr12 3173947 3174240 -141108249 - AluSx SINE Alu -18 294 2 1927 127 0 7 chr12 3174291 3174598 -141107891 - AluSx SINE Alu 0 305 1 2212 87 0 22 chr12 3174841 3175152 -141107337 - AluSc SINE Alu -5 304 1 1842 112 47 4 chr12 3175327 3175605 -141106884 - AluSx SINE Alu -17 295 6 1701 100 0 0 chr12 3176563 3176793 -141105696 + AluSg/x SINE Alu 66 295 -17 2345 71 0 0 chr12 3176904 3177200 -141105289 + AluY SINE Alu 1 296 -15 1271 112 0 21 chr12 3177217 3177405 -141105084 + AluSq SINE Alu 106 289 -24 2176 83 13 0 chr12 3177420 3177720 -141104769 - AluSx SINE Alu -8 304 1 2152 99 3 0 chr12 3177856 3178148 -141104341 - AluSp SINE Alu -20 293 1 2093 99 3 23 chr12 3178198 3178500 -141103989 - AluSx SINE Alu -16 296 1 1807 157 7 0 chr12 3179536 3179835 -141102654 + AluJb SINE Alu 1 301 -11 312 169 143 13 chr12 3179911 3179988 -141102501 + MIR SINE MIR 100 186 -76 2175 80 3 10 chr12 3180448 3180748 -141101741 - AluSq SINE Alu -14 299 2 1755 178 3 0 chr12 3181110 3181403 -141101086 + AluJo SINE Alu 1 294 -18 2342 53 0 20 chr12 3182164 3182467 -141100022 - AluY SINE Alu -14 297 1 198 246 66 33 chr12 3182471 3182532 -141099957 - MIR SINE MIR -86 176 114 192 291 0 36 chr12 3182534 3182589 -141099900 - L2 LINE L2 -12 3301 3249 1952 111 36 13 chr12 3182681 3182987 -141099502 + AluSq SINE Alu 1 313 0 1691 162 0 30 chr12 3183000 3183303 -141099186 + AluJb SINE Alu 3 296 -16 417 317 89 85 chr12 3183319 3183704 -141098785 - L2 LINE L2 -15 3257 2875 1561 182 10 19 chr12 3183704 3184012 -141098477 + AluJo SINE Alu 1 305 -7 894 186 6 12 chr12 3184019 3184180 -141098309 + FRAM SINE Alu 4 163 -3 417 317 89 85 chr12 3184180 3184204 -141098285 - L2 LINE L2 -402 2870 2848 2165 63 31 14 chr12 3184204 3184491 -141097998 + AluY SINE Alu 1 292 -19 417 317 89 85 chr12 3184491 3184629 -141097860 - L2 LINE L2 -424 2848 2619 180 259 241 0 chr12 3184829 3184887 -141097602 - MIR SINE MIR -8 254 183 1639 132 66 11 chr12 3185527 3185799 -141096690 + AluJb SINE Alu 2 288 -24 2294 173 56 18 chr12 3185858 3185928 -141096561 - L1MB8 LINE L1 0 6178 6112 1705 150 3 19 chr12 3185928 3186235 -141096254 + AluSq SINE Alu 1 302 -11 2294 173 56 18 chr12 3186235 3186667 -141095822 - L1MB8 LINE L1 -66 6112 5657 2020 108 42 0 chr12 3186675 3186961 -141095528 - AluSg SINE Alu -12 298 1 2246 103 3 0 chr12 3187557 3187869 -141094620 + AluSp SINE Alu 1 313 0 237 91 0 68 chr12 3187920 3187964 -141094525 - L1MB4 LINE L1 0 6180 6140 2095 103 0 7 chr12 3187969 3188259 -141094230 + AluSx SINE Alu 1 288 -24 281 140 53 18 chr12 3188274 3188331 -141094158 + U7 snRNA snRNA 2 60 -3 1084 181 112 84 chr12 3188363 3188389 -141094100 - AluJo SINE Alu -7 295 271 2040 36 4 0 chr12 3188389 3188636 -141093853 + AluY SINE Alu 45 292 -19 1084 181 112 84 chr12 3188636 3188896 -141093593 - AluJo SINE Alu -31 271 1 2147 94 17 0 chr12 3188900 3189197 -141093292 - AluY SINE Alu -9 302 1 1294 154 23 0 chr12 3189206 3189426 -141093063 - L1MB4 LINE L1 -29 6151 5927 24 0 0 0 chr12 3189717 3189741 -141092748 + AT_rich Low_complexity Low_complexity 1 24 0 2327 66 0 0 chr12 3189744 3190031 -141092458 - AluY SINE Alu -24 287 1 583 311 51 8 chr12 3191110 3191345 -141091144 - MIR SINE MIR -5 257 13 2071 148 0 3 chr12 3191605 3191908 -141090581 + AluSx SINE Alu 1 302 -10 568 220 0 0 chr12 3192014 3192123 -141090366 - FLAM_A SINE Alu -33 109 1 2496 84 3 0 chr12 3192241 3192549 -141089940 - AluY SINE Alu -2 309 1 189 107 0 0 chr12 3192949 3192977 -141089512 + (A)n Simple_repeat Simple_repeat 1 28 0 2091 141 3 0 chr12 3192977 3193276 -141089213 + AluSx SINE Alu 1 300 -12 1846 164 3 13 chr12 3193280 3193590 -141088899 + AluJo SINE Alu 6 312 0 300 282 121 77 chr12 3193962 3194302 -141088187 - L1MCa LINE L1 -5146 1280 926 243 299 91 0 chr12 3194750 3194827 -141087662 + L2 LINE L2 3229 3312 -1 1931 130 20 7 chr12 3194999 3195291 -141087198 + AluJb SINE Alu 1 296 -16 2327 92 0 10 chr12 3195293 3195596 -141086893 + AluSx SINE Alu 1 300 -12 2033 86 45 41 chr12 3195777 3196069 -141086420 + AluSp SINE Alu 1 293 -20 2151 81 37 37 chr12 3196134 3196429 -141086060 + AluSc SINE Alu 1 295 -14 2577 74 3 0 chr12 3196512 3196824 -141085665 - AluSq SINE Alu 0 313 1 1901 117 60 7 chr12 3197822 3198105 -141084384 + AluJb SINE Alu 1 298 -14 1813 149 4 18 chr12 3198280 3198561 -141083928 + AluJb SINE Alu 28 304 -8 2131 133 0 3 chr12 3200523 3200823 -141081666 + AluSx SINE Alu 1 299 -13 1818 129 92 4 chr12 3201148 3201419 -141081070 - AluSg SINE Alu -15 295 1 1275 110 0 0 chr12 3201419 3201592 -141080897 - AluSc SINE Alu -2 307 135 1667 178 31 3 chr12 3201604 3201890 -141080599 - AluJb SINE Alu -18 294 1 1904 133 61 0 chr12 3201934 3202212 -141080277 + AluSq SINE Alu 2 296 -17 2130 135 10 0 chr12 3202427 3202731 -141079758 - AluJb SINE Alu -5 307 1 2688 58 0 0 chr12 3203057 3203368 -141079121 - AluY SINE Alu 0 311 1 2258 53 88 0 chr12 3204293 3204576 -141077913 + AluY SINE Alu 2 309 -2 1864 136 16 52 chr12 3204664 3204974 -141077515 - AluJb SINE Alu -13 299 1 1810 130 44 0 chr12 3205020 3205290 -141077199 + AluJo SINE Alu 11 292 -20 2699 39 0 3 chr12 3205837 3206143 -141076346 + AluY SINE Alu 1 305 -6 2327 95 7 0 chr12 3206284 3206578 -141075911 + AluSx SINE Alu 5 300 -12 2573 52 0 16 chr12 3206714 3207024 -141075465 - AluY SINE Alu -5 306 2 723 162 143 19 chr12 3207072 3207226 -141075263 + FRAM SINE Alu 1 173 -3 451 260 101 54 chr12 3207251 3207293 -141075196 + L1MC4a LINE L1 5741 5780 -2028 1308 200 0 123 chr12 3207293 3207643 -141074846 + AluSx SINE Alu 1 307 -5 451 260 101 54 chr12 3207643 3207877 -141074612 + L1MC4a LINE L1 5780 6030 -1778 1888 174 7 0 chr12 3207920 3208219 -141074270 - AluJb SINE Alu -11 301 1 2113 130 3 0 chr12 3208277 3208584 -141073905 - AluSx SINE Alu 0 308 1 857 169 12 44 chr12 3208590 3208750 -141073739 - AluJb SINE Alu -25 287 133 530 150 242 8 chr12 3208912 3209032 -141073457 - MER3 DNA MER1_type -24 185 38 2189 142 0 0 chr12 3209032 3209343 -141073146 - AluSx SINE Alu -1 311 1 956 186 0 0 chr12 3209344 3209505 -141072984 - AluSg/x SINE Alu -15 295 135 1573 175 110 11 chr12 3210030 3210385 -141072104 - MLT1B LTR MaLR 0 390 1 1939 164 3 10 chr12 3210431 3210735 -141071754 - AluJb SINE Alu -10 302 1 212 0 36 0 chr12 3210820 3210848 -141071641 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 712 127 0 0 chr12 3210872 3210982 -141071507 + AluJb SINE Alu 185 294 -18 1140 53 8 0 chr12 3210982 3211114 -141071375 + AluSc SINE Alu 1 133 -176 2052 114 17 3 chr12 3211114 3211404 -141071085 + AluSx SINE Alu 1 294 -18 2502 81 3 0 chr12 3211406 3211716 -141070773 + AluY SINE Alu 1 311 0 990 120 0 0 chr12 3211825 3211958 -141070531 + AluSq/x SINE Alu 1 133 -180 21 0 0 0 chr12 3211960 3211981 -141070508 + AT_rich Low_complexity Low_complexity 1 21 0 1637 195 13 23 chr12 3212098 3212406 -141070083 + AluJb SINE Alu 1 305 -7 408 72 0 14 chr12 3212689 3212758 -141069731 - L1MA9 LINE L1 -5 6307 6240 547 75 88 0 chr12 3212758 3212838 -141069651 - AluY SINE Alu -24 287 201 * 699 103 28 9 chr12 3212832 3212939 -141069550 - AluSq/x SINE Alu -203 110 2 2375 72 3 3 chr12 3212943 3213234 -141069255 - AluSc SINE Alu -18 291 1 2615 50 0 0 chr12 3213234 3213531 -141068958 - AluY SINE Alu -14 297 1 198 0 0 0 chr12 3213531 3213553 -141068936 + (T)n Simple_repeat Simple_repeat 1 22 0 514 86 108 21 chr12 3213554 3213647 -141068842 - U6 snRNA snRNA -6 101 1 2347 60 0 3 chr12 3213789 3214095 -141068394 + AluY SINE Alu 1 305 0 1230 148 0 0 chr12 3214102 3214278 -141068211 + AluSp SINE Alu 137 312 -1 2454 87 3 0 chr12 3214378 3214689 -141067800 - AluSp SINE Alu -1 312 1 2214 117 0 3 chr12 3214690 3214988 -141067501 - AluSq SINE Alu -16 297 1 1881 171 0 25 chr12 3215043 3215359 -141067130 - AluJb SINE Alu 0 312 5 2373 98 10 0 chr12 3215977 3216283 -141066206 - AluSp SINE Alu -4 309 1 283 312 115 10 chr12 3216531 3216760 -141065729 + L2 LINE L2 2775 3026 -246 24 0 0 0 chr12 3216915 3216939 -141065550 + AT_rich Low_complexity Low_complexity 1 24 0 992 128 0 2 chr12 3216940 3217176 -141065313 - AluJb SINE Alu -27 285 5 547 345 39 4 chr12 3217258 3217487 -141065002 - MARNA DNA Mariner -4 582 346 253 79 0 0 chr12 3217653 3217691 -141064798 - MARNA DNA Mariner -242 344 307 207 261 0 29 chr12 3217876 3217945 -141064544 + L2 LINE L2 3140 3206 -66 229 62 42 21 chr12 3218547 3218595 -141063894 + (CCCGG)n Simple_repeat Simple_repeat 3 51 0 32 67 0 0 chr12 3218796 3218856 -141063633 + GC_rich Low_complexity Low_complexity 1 60 0 211 308 0 26 chr12 3220825 3220903 -141061586 + MIR3 SINE MIR 4 79 -129 210 314 0 0 chr12 3221165 3221216 -141061273 - L2 LINE L2 -5 3308 3258 438 228 0 63 chr12 3221386 3221400 -141061089 - MIR3 SINE MIR -47 161 148 1736 71 141 31 chr12 3221400 3221572 -141060917 - AluSx SINE Alu 0 333 181 492 95 0 0 chr12 3221572 3221656 -141060833 + (TA)n Simple_repeat Simple_repeat 2 85 0 2283 101 3 0 chr12 3221656 3221943 -141060546 - AluSp SINE Alu -25 288 1 1736 71 141 31 chr12 3221943 3222074 -141060415 - AluSx SINE Alu -151 182 1 438 228 0 63 chr12 3222074 3222185 -141060304 - MIR3 SINE MIR -60 148 43 2267 101 0 49 chr12 3223756 3224082 -141058407 - AluSp SINE Alu -3 310 1 1769 166 23 26 chr12 3224461 3224768 -141057721 - AluJo SINE Alu -6 306 1 2251 60 32 7 chr12 3224869 3225152 -141057337 - AluY SINE Alu -21 290 1 27 29 0 0 chr12 3225152 3225186 -141057303 + AT_rich Low_complexity Low_complexity 1 34 0 849 168 8 0 chr12 3225189 3225320 -141057169 - AluJb SINE Alu -31 281 150 335 319 84 37 chr12 3225457 3225648 -141056841 + L3 LINE CR1 438 637 -940 2286 111 7 7 chr12 3225712 3226018 -141056471 - AluSg SINE Alu -3 307 2 2339 105 0 0 chr12 3226021 3226315 -141056174 - AluSx SINE Alu -18 294 1 270 267 56 11 chr12 3226339 3226429 -141056060 + L3 LINE CR1 715 808 -769 391 267 170 30 chr12 3226443 3226814 -141055675 - L1ME4a LINE L1 -15 6106 5684 409 280 30 30 chr12 3226823 3226955 -141055534 + L3 LINE CR1 794 925 -652 229 302 62 21 chr12 3226973 3227069 -141055420 - MIR SINE MIR -6 256 157 2485 83 3 0 chr12 3227392 3227694 -141054795 - AluSp SINE Alu -10 303 1 1080 138 16 122 chr12 3227694 3227948 -141054541 - AluJo SINE Alu -1 311 85 185 0 40 0 chr12 3227948 3227973 -141054516 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1818 160 0 24 chr12 3227976 3228264 -141054225 - AluJo SINE Alu -31 281 1 944 221 88 48 chr12 3228426 3228756 -141053733 - MER2 DNA MER2_type -1 343 1 296 316 32 0 chr12 3228779 3228874 -141053615 + L3 LINE CR1 1477 1574 -3 213 220 0 20 chr12 3228872 3228922 -141053567 + MIR3 SINE MIR 114 162 -46 * 870 163 0 7 chr12 3229253 3229388 -141053101 + FLAM_A SINE Alu 1 134 -8 844 198 47 9 chr12 3229391 3229603 -141052886 - MER33 DNA MER1_type -83 241 22 471 231 267 15 chr12 3229605 3229800 -141052689 + MIR SINE MIR 14 257 -5 271 271 59 0 chr12 3230371 3230456 -141052033 - L2 LINE L2 -27 3286 3197 2392 60 7 20 chr12 3230740 3231083 -141051406 - AluY SINE Alu 0 311 1 2263 123 0 0 chr12 3231109 3231410 -141051079 - AluSx SINE Alu 0 312 12 1880 156 0 11 chr12 3231410 3231690 -141050799 - AluJo SINE Alu -33 279 1 2613 65 0 3 chr12 3231800 3232106 -141050383 - AluSp SINE Alu -5 308 4 746 183 83 65 chr12 3232152 3232442 -141050047 - L1ME1 LINE L1 -5 6161 5867 1318 164 44 0 chr12 3232445 3232670 -141049819 - AluJb SINE Alu -77 235 1 270 135 14 122 chr12 3232673 3232747 -141049742 - L1ME1 LINE L1 -859 5287 5222 2173 106 26 10 chr12 3233309 3233611 -141048878 - AluSx SINE Alu -5 307 1 23 33 0 0 chr12 3234370 3234400 -141048089 + AT_rich Low_complexity Low_complexity 1 30 0 2385 176 50 32 chr12 3234492 3234665 -141047824 - L1MC2 LINE L1 -5 6339 6171 2282 99 3 0 chr12 3234665 3234996 -141047493 - AluSp SINE Alu 0 332 1 2385 176 50 32 chr12 3234996 3235317 -141047172 - L1MC2 LINE L1 -173 6171 5831 2192 112 3 23 chr12 3235317 3235620 -141046869 - AluSx SINE Alu -15 297 1 2385 176 50 32 chr12 3235620 3235658 -141046831 - L1MC2 LINE L1 -513 5831 5795 375 351 8 0 chr12 3235670 3235801 -141046688 - MIR SINE MIR -55 153 22 218 319 97 43 chr12 3236378 3236585 -141045904 - MIR SINE MIR -32 230 13 236 243 14 0 chr12 3236595 3236669 -141045820 + CT-rich Low_complexity Low_complexity 2 76 0 295 308 96 25 chr12 3236840 3237038 -141045451 - MIR SINE MIR -34 228 17 2007 165 27 87 chr12 3237519 3237685 -141044804 - L1MB3 LINE L1 -9 6174 6000 1898 118 34 34 chr12 3237685 3238011 -141044478 - AluSx SINE Alu 0 312 2 2007 165 27 87 chr12 3238011 3238222 -141044267 - L1MB3 LINE L1 -183 6000 5830 2417 89 0 0 chr12 3238222 3238524 -141043965 - AluSx SINE Alu -10 302 1 2007 165 27 87 chr12 3238524 3238630 -141043859 - L1MB3 LINE L1 -353 5830 5719 1208 212 62 50 chr12 3238650 3238989 -141043500 + MER82 DNA MER2_type 311 653 0 619 189 114 0 chr12 3239024 3239156 -141043333 - MSTD LTR MaLR -249 147 1 187 298 0 0 chr12 3239161 3239208 -141043281 + L2 LINE L2 3262 3308 -5 388 222 67 0 chr12 3239397 3239487 -141043002 + MIR SINE MIR 53 148 -60 2302 114 0 0 chr12 3239759 3240058 -141042431 + AluSx SINE Alu 1 299 -13 473 123 37 0 chr12 3240088 3240169 -141042320 + AluS SINE Alu 2 85 -227 369 339 62 0 chr12 3240241 3240418 -141042071 + MIR SINE MIR 57 244 -18 198 248 0 119 chr12 3240847 3240956 -141041533 + L2 LINE L2 3142 3237 -76 21 57 0 0 chr12 3242465 3242500 -141039989 + AT_rich Low_complexity Low_complexity 1 35 0 442 311 43 24 chr12 3242753 3242917 -141039572 - MIR3 SINE MIR -8 200 34 396 285 182 31 chr12 3243094 3243413 -141039076 - L2 LINE L2 -7 3265 2899 211 360 182 11 chr12 3243558 3243822 -141038667 - L2 LINE L2 -542 2772 2464 3209 113 26 85 chr12 3243824 3244426 -141038063 - Tigger3(Golem) DNA MER2_type 0 3029 2466 2279 78 0 3 chr12 3244426 3244720 -141037769 + AluY SINE Alu 16 308 -3 3209 113 26 85 chr12 3244720 3244762 -141037727 - Tigger3(Golem) DNA MER2_type -563 2466 2423 272 217 0 12 chr12 3244923 3245006 -141037483 + G-rich Low_complexity Low_complexity 5 86 0 284 279 7 7 chr12 3245028 3245178 -141037311 + G-rich Low_complexity Low_complexity 1 150 0 2234 79 3 10 chr12 3245271 3245588 -141036901 + AluSx SINE Alu 1 315 0 310 211 53 0 chr12 3245595 3245690 -141036799 - L1M4 LINE L1 -1554 4592 4493 3174 198 43 23 chr12 3245692 3245718 -141036771 + MER21B LTR ERV1 1 25 -838 2166 70 37 20 chr12 3245718 3246016 -141036473 + AluSq SINE Alu 1 303 -10 3174 198 43 23 chr12 3246016 3246647 -141035842 + MER21B LTR ERV1 25 671 -192 488 161 0 25 chr12 3246647 3246728 -141035761 - AluJ/FLAM SINE Alu -232 80 2 608 268 86 67 chr12 3246759 3246923 -141035566 - L1MEd LINE L1 -4715 1595 1436 1974 134 0 3 chr12 3246923 3247222 -141035267 - AluSx SINE Alu -9 303 6 608 268 86 67 chr12 3247222 3247774 -141034715 - L1MEd LINE L1 -4874 1436 826 371 366 114 25 chr12 3247778 3247947 -141034542 - L1MEd LINE L1 -5526 593 440 2079 121 16 0 chr12 3247947 3248253 -141034236 - AluSx SINE Alu -1 311 1 371 366 114 25 chr12 3248253 3248400 -141034089 - L1MEd LINE L1 -5679 440 249 1430 164 53 49 chr12 3248405 3248709 -141033780 + AluJo SINE Alu 1 305 -7 226 272 0 25 chr12 3248758 3248839 -141033650 - L1MEd LINE L1 -6037 82 4 1996 141 0 10 chr12 3248867 3249166 -141033323 + AluSx SINE Alu 1 296 -16 238 296 47 7 chr12 3249337 3249462 -141033027 + MIR SINE MIR 20 152 -56 2315 77 0 0 chr12 3249503 3249802 -141032687 - AluSx SINE Alu -13 299 1 1072 227 36 0 chr12 3250584 3250831 -141031658 - L1MB2 LINE L1 -2 6169 5914 554 128 0 23 chr12 3250847 3250933 -141031556 - AluJ/FLAM SINE Alu -227 85 2 1859 155 0 22 chr12 3250944 3251261 -141031228 - AluJb SINE Alu -2 310 1 1614 185 42 5 chr12 3251262 3251584 -141030905 - L1MB2 LINE L1 -222 5949 5559 2070 87 0 4 chr12 3251584 3251859 -141030630 - AluSx SINE Alu -38 274 1 1614 185 42 5 chr12 3251859 3251898 -141030591 - L1MB2 LINE L1 -612 5559 5523 190 366 12 0 chr12 3251996 3252078 -141030411 - MIR3 SINE MIR -41 167 85 214 241 52 0 chr12 3252852 3252910 -141029579 - L2 LINE L2 0 3272 3212 1670 169 0 22 chr12 3253204 3253523 -141028966 + AluJo SINE Alu 1 312 0 1070 134 0 12 chr12 3253864 3253879 -141028610 - AluSg/x SINE Alu -14 296 282 2167 106 3 6 chr12 3253879 3254191 -141028298 - AluSp SINE Alu 0 313 3 192 40 0 0 chr12 3254191 3254216 -141028273 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1070 134 0 12 chr12 3254216 3254370 -141028119 - AluSg/x SINE Alu -26 284 128 857 237 72 47 chr12 3254434 3254713 -141027776 - MLT1J LTR MaLR 0 511 226 2269 164 29 40 chr12 3255303 3255748 -141026741 - L1MB3 LINE L1 -10 6173 5734 295 295 59 23 chr12 3256114 3256289 -141026200 - MIR3 SINE MIR -62 146 12 2367 162 52 0 chr12 3257734 3258141 -141024348 - MSTC LTR MaLR 0 428 1 230 208 16 70 chr12 3258263 3258355 -141024134 - MIR SINE MIR -95 113 32 458 185 56 9 chr12 3258569 3258677 -141023812 + MIR SINE MIR 52 164 -98 4159 146 27 52 chr12 3258703 3258971 -141023518 - L1MB4 LINE L1 -2 6178 5905 2214 83 0 23 chr12 3258971 3259272 -141023217 + AluSg SINE Alu 1 294 -16 4159 146 27 52 chr12 3259272 3259301 -141023188 - L1MB4 LINE L1 -275 5905 5877 1929 102 21 25 chr12 3259301 3259586 -141022903 + AluSx SINE Alu 12 295 -17 4159 146 27 52 chr12 3259586 3260115 -141022374 - L1MB4 LINE L1 -303 5877 5372 268 274 113 28 chr12 3261832 3261938 -141020551 + MIR3 SINE MIR 72 186 -22 484 293 116 0 chr12 3262001 3262165 -141020324 + MIR SINE MIR 26 208 -54 1935 162 21 60 chr12 3262548 3262767 -141019722 + L1MA7 LINE L1 5844 6039 -252 1551 158 3 100 chr12 3262767 3262966 -141019523 - AluJo SINE Alu -4 308 154 2306 87 0 10 chr12 3262966 3263278 -141019211 - AluY SINE Alu 0 311 3 1551 158 3 100 chr12 3263278 3263419 -141019070 - AluJo SINE Alu -158 154 1 1935 162 21 60 chr12 3263419 3263631 -141018858 + L1MA7 LINE L1 6039 6258 -33 1340 167 21 17 chr12 3263631 3263864 -141018625 + MER46A DNA MER2_type 1 234 -2 2128 99 36 0 chr12 3263893 3264195 -141018294 + AluSp SINE Alu 1 313 0 2059 113 10 7 chr12 3264225 3264527 -141017962 + AluSx SINE Alu 1 303 -9 514 193 0 0 chr12 3264972 3265060 -141017429 + MER69A DNA AcHobo 3 90 -87 627 237 0 7 chr12 3265061 3265196 -141017293 - L1MA10 LINE L1 -12 6322 6189 343 232 50 10 chr12 3265197 3265296 -141017193 + MER69A DNA AcHobo 75 177 0 900 260 153 41 chr12 3265459 3266182 -141016307 - L2 LINE L2 -2 3311 2497 216 367 22 43 chr12 3266192 3266331 -141016158 - L2 LINE L2 -51 3221 3086 2299 89 0 9 chr12 3266627 3266942 -141015547 + AluSx SINE Alu 1 312 0 2143 117 0 3 chr12 3268706 3269013 -141013476 - AluSq SINE Alu -7 306 1 2231 113 0 0 chr12 3269145 3269447 -141013042 - AluSx SINE Alu -10 302 1 1425 203 10 7 chr12 3270432 3270733 -141011756 - AluJo SINE Alu -10 302 1 21 0 0 0 chr12 3270740 3270761 -141011728 + AT_rich Low_complexity Low_complexity 1 21 0 2158 88 18 0 chr12 3270938 3271222 -141011267 + AluSx SINE Alu 1 289 -23 613 161 194 0 chr12 3271243 3271367 -141011122 + FAM SINE Alu 16 163 -22 242 347 13 0 chr12 3271369 3271444 -141011045 + MIR3 SINE MIR 126 201 -7 423 254 51 14 chr12 3272041 3272179 -141010310 + MIR3 SINE MIR 37 179 -29 817 146 36 0 chr12 3273137 3273274 -141009215 - AluJb SINE Alu -7 305 164 580 179 60 0 chr12 3273382 3273499 -141008990 + AluJo SINE Alu 5 128 -174 1677 189 0 0 chr12 3273513 3273809 -141008680 - AluJb SINE Alu -16 296 1 998 190 18 0 chr12 3273940 3274103 -141008386 + AluJo SINE Alu 137 302 0 195 359 13 0 chr12 3274511 3274589 -141007900 - L2 LINE L2 -8 3264 3186 294 323 49 0 chr12 3274649 3274776 -141007713 - MIR SINE MIR -67 141 33 21 0 0 0 chr12 3274974 3274995 -141007494 + GC_rich Low_complexity Low_complexity 1 21 0 186 219 24 0 chr12 3275292 3275333 -141007156 - MIR SINE MIR -118 144 103 270 303 15 38 chr12 3277608 3277740 -141004749 - L2 LINE L2 -1 3312 3184 207 270 79 67 chr12 3277720 3277809 -141004680 + L2 LINE L2 3144 3233 -80 * 267 289 19 19 chr12 3278357 3278461 -141004028 + CT-rich Low_complexity Low_complexity 1 104 0 2177 114 0 3 chr12 3278786 3279092 -141003397 - AluSx SINE Alu -7 305 1 357 269 83 40 chr12 3279165 3279317 -141003172 - MIR SINE MIR -58 150 6 1845 113 17 26 chr12 3280987 3281289 -141001200 + AluSg SINE Alu 1 299 -11 913 175 48 137 chr12 3281302 3281639 -141000850 + MLT1A1 LTR MaLR 1 307 -58 1758 249 87 96 chr12 3281920 3281997 -141000492 - HAL1 LINE L1 -6 2501 2425 2003 104 7 23 chr12 3281997 3282305 -141000184 + AluSg SINE Alu 1 303 -7 1758 249 87 96 chr12 3282305 3282578 -140999911 - HAL1 LINE L1 -82 2425 2151 2028 35 24 12 chr12 3282578 3282832 -140999657 - AluY SINE Alu -19 292 36 1758 249 87 96 chr12 3282832 3282883 -140999606 - HAL1 LINE L1 -356 2151 2101 1722 157 61 0 chr12 3282883 3283176 -140999313 + AluJb SINE Alu 1 311 -1 1758 249 87 96 chr12 3283176 3283433 -140999056 - HAL1 LINE L1 -406 2101 1843 2110 110 10 0 chr12 3283433 3283733 -140998756 - AluSx SINE Alu -9 303 1 1758 249 87 96 chr12 3283733 3284016 -140998473 - HAL1 LINE L1 -664 1843 1559 1850 151 0 29 chr12 3284016 3284328 -140998161 - AluSx SINE Alu -9 303 1 1758 249 87 96 chr12 3284328 3284792 -140997697 - HAL1 LINE L1 -948 1559 1105 632 279 109 20 chr12 3284793 3285040 -140997449 - MLT1J LTR MaLR 0 511 243 1656 98 114 4 chr12 3285503 3285757 -140996732 - AluSq SINE Alu -31 282 1 421 282 60 0 chr12 3285762 3285879 -140996610 - HAL1 LINE L1 -1558 949 826 786 164 15 15 chr12 3285942 3286076 -140996413 + AluJo SINE Alu 2 135 -177 1698 188 0 0 chr12 3286076 3286368 -140996121 + AluSx SINE Alu 1 292 -20 3782 151 71 50 chr12 3286368 3287132 -140995357 - L1MB8 LINE L1 -57 6121 5374 1866 155 7 0 chr12 3287132 3287422 -140995067 - AluSx SINE Alu -20 292 1 3782 151 71 50 chr12 3287422 3287556 -140994933 - L1MB8 LINE L1 -804 5374 5244 1741 141 19 48 chr12 3287556 3287725 -140994764 - AluJo SINE Alu -8 304 147 2473 53 0 3 chr12 3287725 3288029 -140994460 - AluY SINE Alu -8 303 1 1741 141 19 48 chr12 3288029 3288172 -140994317 - AluJo SINE Alu -165 147 1 3782 151 71 50 chr12 3288172 3288277 -140994212 - L1MB8 LINE L1 -934 5244 5093 688 299 31 63 chr12 3288281 3288662 -140993827 - HAL1 LINE L1 -1703 804 436 801 181 0 0 chr12 3288690 3288828 -140993661 - FLAM_C SINE Alu -5 138 1 266 306 56 21 chr12 3289071 3289215 -140993274 - HAL1 LINE L1 -2358 149 1 190 324 46 56 chr12 3289964 3290072 -140992417 - MIR SINE MIR -79 183 77 482 289 64 46 chr12 3290155 3290373 -140992116 - MIR SINE MIR -40 222 1 262 304 56 0 chr12 3290992 3291104 -140991385 + MIR SINE MIR 48 165 -43 819 139 0 0 chr12 3293144 3293259 -140989230 + AluJb SINE Alu 3 117 -195 2235 113 0 23 chr12 3293303 3293612 -140988877 + AluSx SINE Alu 1 302 -10 1998 182 7 0 chr12 3294031 3294339 -140988150 + AluJo SINE Alu 1 310 -2 210 235 44 29 chr12 3294349 3294417 -140988072 + MIR SINE MIR 36 104 -104 223 262 74 94 chr12 3296868 3297017 -140985472 - MIR3 SINE MIR -22 186 41 349 300 71 21 chr12 3297616 3297756 -140984733 - MER5B DNA MER1_type 0 178 32 682 222 86 50 chr12 3297756 3297977 -140984512 - L1MD2 LINE L1 0 6359 6131 2372 87 10 0 chr12 3298180 3298478 -140984011 - AluSx SINE Alu -11 301 1 244 203 119 76 chr12 3299979 3300097 -140982392 + MIR SINE MIR 24 146 -116 258 95 0 0 chr12 3300155 3300197 -140982292 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 572 192 295 5 chr12 3300406 3300599 -140981890 + MIR SINE MIR 14 262 0 314 184 138 0 chr12 3301744 3301831 -140980658 - MIR SINE MIR -70 192 94 238 275 25 50 chr12 3301849 3301929 -140980560 - L2 LINE L2 0 3313 3236 337 285 134 18 chr12 3301983 3302418 -140980071 - L2 LINE L2 -188 3125 2644 189 0 0 0 chr12 3302975 3302996 -140979493 + (AGGGGG)n Simple_repeat Simple_repeat 6 26 0 2510 90 0 0 chr12 3303125 3303435 -140979054 + AluSq SINE Alu 1 310 -3 207 307 67 0 chr12 3303468 3303543 -140978946 + MIR SINE MIR 70 149 -113 2031 126 48 3 chr12 3303934 3304228 -140978261 + AluJb SINE Alu 1 307 -5 796 188 0 0 chr12 3305325 3305458 -140977031 - FLAM_A SINE Alu 0 133 1 1972 125 11 57 chr12 3305489 3305710 -140976779 + MER1B DNA MER1_type 1 202 -2508 2447 59 7 20 chr12 3305710 3306016 -140976473 + AluY SINE Alu 1 302 -9 1972 125 11 57 chr12 3306016 3306147 -140976342 + MER1B DNA MER1_type 202 337 0 315 309 36 52 chr12 3306722 3306916 -140975573 - L2 LINE L2 -19 3294 3104 729 179 0 8 chr12 3306957 3307091 -140975398 - FLAM_A SINE Alu -9 133 1 1900 163 3 13 chr12 3307100 3307401 -140975088 - AluJb SINE Alu -13 299 2 1205 186 18 63 chr12 3307401 3307503 -140974986 + MER58B DNA MER1_type 78 183 -2237 1990 137 27 0 chr12 3307503 3307796 -140974693 - AluJb SINE Alu -11 301 1 1205 186 18 63 chr12 3307796 3307968 -140974521 + MER58B DNA MER1_type 183 341 0 1501 302 122 7 chr12 3308133 3308874 -140973615 - HAL1 LINE L1 -1480 1027 202 406 135 11 11 chr12 3308876 3308930 -140973559 + CT-rich Low_complexity Low_complexity 2 58 -32 2249 115 0 0 chr12 3308930 3309218 -140973271 - AluSx SINE Alu -24 288 1 406 135 11 11 chr12 3309218 3309252 -140973237 + CT-rich Low_complexity Low_complexity 57 90 0 1645 169 0 4 chr12 3309288 3309543 -140972946 - AluJb SINE Alu -54 258 5 390 88 50 25 chr12 3309557 3309637 -140972852 + CT-rich Low_complexity Low_complexity 1 82 0 377 70 18 0 chr12 3309653 3309710 -140972779 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 841 126 11 27 chr12 3309711 3309894 -140972595 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 257 203 43 0 chr12 3309902 3309971 -140972518 + CT-rich Low_complexity Low_complexity 6 77 0 272 170 0 21 chr12 3309972 3310019 -140972470 - Alu SINE Alu -22 280 235 256 279 113 81 chr12 3310022 3310108 -140972381 - MLT1J LTR MaLR -52 459 377 1414 199 57 4 chr12 3310108 3310389 -140972100 - AluSx SINE Alu -16 296 1 256 279 113 81 chr12 3310389 3310524 -140971965 - MLT1J LTR MaLR -134 377 231 2401 68 10 32 chr12 3310693 3311002 -140971487 + AluSp SINE Alu 1 302 -11 1280 168 44 103 chr12 3311015 3311403 -140971086 + MLT1A1 LTR MaLR 1 365 0 612 242 199 5 chr12 3311600 3311786 -140970703 - MLT1J LTR MaLR -257 254 33 2050 145 0 3 chr12 3311864 3312161 -140970328 - AluJo SINE Alu -16 296 1 1737 182 10 22 chr12 3312161 3312473 -140970016 - AluJo SINE Alu -3 309 1 2623 48 0 13 chr12 3312519 3312832 -140969657 - AluY SINE Alu -2 309 1 264 315 87 3 chr12 3312839 3312983 -140969506 - MIR SINE MIR -50 212 58 381 151 0 0 chr12 3313169 3313255 -140969234 + (CCTG)n Simple_repeat Simple_repeat 3 88 0 1311 170 0 38 chr12 3313255 3313490 -140968999 - AluJb SINE Alu -3 309 84 216 274 43 4 chr12 3313975 3314067 -140968422 - MIR SINE MIR -104 104 12 650 245 21 7 chr12 3314455 3314598 -140967891 - L2 LINE L2 -2 3311 3167 833 163 0 16 chr12 3314803 3314932 -140967557 + FLAM_C SINE Alu 1 127 -16 207 322 17 26 chr12 3315046 3315161 -140967328 + MER5A DNA MER1_type 4 117 -72 829 236 16 16 chr12 3315635 3315826 -140966663 - AluJo SINE Alu 0 312 122 189 0 0 0 chr12 3316753 3316774 -140965715 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2693 46 0 0 chr12 3316863 3317170 -140965319 + AluY SINE Alu 1 307 -4 201 74 0 0 chr12 3317399 3317426 -140965063 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 1552 158 0 0 chr12 3317437 3317665 -140964824 - AluJo SINE Alu -84 228 1 2663 42 0 7 chr12 3317674 3317984 -140964505 - AluY SINE Alu -3 308 1 332 201 163 105 chr12 3318007 3318301 -140964188 - L1MC5 LINE L1 -945 6863 6553 2342 95 7 7 chr12 3318866 3319170 -140963319 - AluSx SINE Alu -8 304 1 1821 209 150 4 chr12 3319422 3319930 -140962559 + MLT1E LTR MaLR 8 589 -4 807 336 110 44 chr12 3319946 3320876 -140961613 + L2 LINE L2 379 1389 -1925 1721 213 0 0 chr12 3320876 3321181 -140961308 - AluJb SINE Alu -7 305 1 807 336 110 44 chr12 3321181 3321303 -140961186 + L2 LINE L2 1389 1501 -1813 2527 165 53 48 chr12 3321324 3321911 -140960578 + LTR8A LTR ERV1 37 626 -101 894 170 19 94 chr12 3321905 3322037 -140960452 + LTR8 LTR ERV1 496 608 -83 * 2292 84 0 0 chr12 3322037 3322311 -140960178 + AluSx SINE Alu 25 298 -14 894 170 19 94 chr12 3322311 3322390 -140960099 + LTR8 LTR ERV1 608 691 0 326 226 189 3 chr12 3322502 3322663 -140959826 - L1ME LINE L1 -4970 1089 826 643 173 0 0 chr12 3322698 3322808 -140959681 - FLAM_A SINE Alu -10 132 23 1773 239 20 93 chr12 3322824 3323300 -140959189 - L1ME LINE L1 -5168 902 493 2255 99 3 0 chr12 3323300 3323604 -140958885 - AluSp SINE Alu 0 305 1 1773 239 20 93 chr12 3323604 3323838 -140958651 - L1ME LINE L1 -5577 493 243 3024 128 14 10 chr12 3323838 3324331 -140958158 + MER4D LTR ERV1 1 495 -408 1350 189 0 0 chr12 3324344 3324572 -140957917 + AluJb SINE Alu 85 312 0 2134 145 0 10 chr12 3324573 3324877 -140957612 + AluJb SINE Alu 1 301 -11 881 129 30 89 chr12 3324877 3325079 -140957410 + MER4E LTR ERV1 429 618 -161 2342 103 0 3 chr12 3325082 3325383 -140957106 - AluY SINE Alu -11 300 1 2261 230 116 14 chr12 3325398 3326064 -140956425 + MER50 LTR ERV1 1 734 0 1067 153 0 6 chr12 3326064 3326225 -140956264 + MER4D LTR ERV1 744 903 0 537 292 12 56 chr12 3326225 3326479 -140956010 - L1ME LINE L1 -5824 246 1 469 304 70 11 chr12 3326503 3326773 -140955716 + L2 LINE L2 1685 1970 -1344 1694 186 0 49 chr12 3326863 3327170 -140955319 - AluJo SINE Alu -20 292 1 2734 45 0 0 chr12 3327236 3327544 -140954945 - AluY SINE Alu -3 308 1 237 83 0 0 chr12 3328334 3328370 -140954119 + (CA)n Simple_repeat Simple_repeat 1 36 0 1071 195 0 0 chr12 3328528 3328713 -140953776 + MER58A DNA MER1_type 39 223 -1 363 181 71 71 chr12 3328761 3328888 -140953601 + MER53 DNA DNA 1 127 -62 23 78 0 0 chr12 3329285 3329336 -140953153 + AT_rich Low_complexity Low_complexity 1 51 0 847 129 9 0 chr12 3329346 3329462 -140953027 - FLAM_C SINE Alu -24 119 3 2403 93 3 13 chr12 3330626 3330939 -140951550 - AluSx SINE Alu 0 312 3 2351 80 7 3 chr12 3330944 3331243 -140951246 - AluSx SINE Alu -12 300 1 2189 91 51 0 chr12 3331305 3331581 -140950908 - AluSx SINE Alu -22 290 1 1013 219 32 24 chr12 3331714 3331960 -140950529 + MIR SINE MIR 13 260 -2 440 198 86 9 chr12 3332272 3332388 -140950101 + MER94 DNA DNA 10 134 0 1871 124 42 35 chr12 3332825 3333108 -140949381 - AluJb SINE Alu -27 285 1 1477 131 3 134 chr12 3333129 3333450 -140949039 + AluJo SINE Alu 33 311 -1 285 267 184 73 chr12 3333461 3333549 -140948940 - MIR SINE MIR -6 256 179 2501 77 7 0 chr12 3333549 3333849 -140948640 - AluSx SINE Alu -6 306 5 285 267 184 73 chr12 3333849 3333966 -140948523 - MIR SINE MIR -83 179 28 1463 169 61 32 chr12 3334460 3334739 -140947750 - AluJo SINE Alu -25 287 1 1832 113 21 17 chr12 3334833 3335124 -140947365 + AluJb SINE Alu 21 312 0 362 92 0 15 chr12 3335738 3335803 -140946686 + (CCCCG)n Simple_repeat Simple_repeat 3 66 0 180 0 0 0 chr12 3335845 3335865 -140946624 + (CGG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr12 3335917 3335939 -140946550 + GC_rich Low_complexity Low_complexity 1 22 0 195 189 0 0 chr12 3336802 3336839 -140945650 + L2 LINE L2 3019 3055 -217 327 311 14 74 chr12 3337324 3337431 -140945058 - MIR3 SINE MIR 0 262 150 2295 101 3 0 chr12 3337431 3337727 -140944762 - AluSx SINE Alu -7 305 9 327 311 14 74 chr12 3337727 3337896 -140944593 - MIR3 SINE MIR -112 150 3 2350 125 0 0 chr12 3337905 3338218 -140944271 - AluSq SINE Alu 0 313 1 1885 141 9 58 chr12 3338220 3338546 -140943943 - AluJo SINE Alu -2 310 1 231 306 117 18 chr12 3338576 3338687 -140943802 + MIR3 SINE MIR 68 189 -19 2242 99 3 10 chr12 3338788 3339092 -140943397 - AluSg SINE Alu -7 303 2 775 167 107 9 chr12 3339092 3339274 -140943215 - L1MB2 LINE L1 -20 6163 5955 459 339 30 0 chr12 3339473 3339641 -140942848 + MIR SINE MIR 90 262 0 1417 170 78 35 chr12 3340141 3340266 -140942223 + AluJo SINE Alu 1 119 -193 351 0 0 0 chr12 3340266 3340305 -140942184 + (TG)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr12 3340304 3340329 -140942160 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 1417 170 78 35 chr12 3340305 3340485 -140942004 + AluJo SINE Alu 119 294 -18 230 299 58 11 chr12 3340487 3340574 -140941915 - L2 LINE L2 -49 3264 3174 226 253 80 0 chr12 3340911 3340986 -140941503 - L2 LINE L2 0 3313 3233 202 260 0 0 chr12 3341285 3341335 -140941154 + L2 LINE L2 3178 3227 -86 437 309 94 6 chr12 3341814 3341995 -140940494 - MER117 DNA MER1_type 0 197 1 186 330 11 32 chr12 3343173 3343267 -140939222 - MIR SINE MIR -66 196 105 551 190 157 0 chr12 3343578 3343699 -140938790 + AluSg SINE Alu 3 142 -168 321 285 29 44 chr12 3344065 3344202 -140938287 + MIR3 SINE MIR 52 186 -22 228 288 30 15 chr12 3345194 3345260 -140937229 - MER91C DNA MER1_type -1 189 123 1682 157 49 28 chr12 3345712 3345998 -140936491 + AluJo SINE Alu 1 292 -20 2157 120 3 3 chr12 3346002 3346293 -140936196 + AluSg SINE Alu 3 293 -17 231 224 53 13 chr12 3346296 3346372 -140936117 + MER91C DNA MER1_type 62 140 0 2620 62 0 0 chr12 3347425 3347729 -140934760 + AluY SINE Alu 1 304 -7 982 140 17 51 chr12 3348095 3348273 -140934216 + AluSg/x SINE Alu 129 300 -10 282 267 45 94 chr12 3348288 3348490 -140933999 + HAL1 LINE L1 1563 1754 -753 886 127 0 0 chr12 3348557 3348683 -140933806 + FLAM_C SINE Alu 1 126 -17 32 57 0 0 chr12 3348848 3348901 -140933588 + AT_rich Low_complexity Low_complexity 1 53 0 1312 85 0 0 chr12 3349648 3349857 -140932632 + AluY SINE Alu 121 329 0 361 305 126 23 chr12 3349977 3350279 -140932210 + L2 LINE L2 2124 2456 -858 1601 153 35 78 chr12 3350282 3350593 -140931896 + Tigger3(Golem) DNA MER2_type 1 324 -2704 2287 118 0 6 chr12 3350593 3350906 -140931583 - AluSx SINE Alu -1 311 1 1601 153 35 78 chr12 3350906 3350966 -140931523 + Tigger3(Golem) DNA MER2_type 324 2153 -875 606 269 188 43 chr12 3351100 3351520 -140930969 - MLT1H LTR MaLR -16 533 53 269 190 69 0 chr12 3354385 3354443 -140928046 + L2 LINE L2 3242 3303 -10 1890 162 3 13 chr12 3354667 3354969 -140927520 - AluJo SINE Alu -13 299 1 2268 92 7 0 chr12 3355324 3355637 -140926852 - AluSp SINE Alu 0 316 2 8512 40 10 14 chr12 3355665 3356663 -140925826 - SVA Other Other 0 1386 393 186 293 98 12 chr12 3357109 3357191 -140925298 + L2 LINE L2 3210 3298 -15 261 0 0 0 chr12 3357193 3357222 -140925267 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2366 49 17 21 chr12 3357357 3357645 -140924844 - AluY SINE Alu -2 309 23 345 292 62 9 chr12 3358807 3358920 -140923569 + MIR3 SINE MIR 87 205 -3 204 318 15 0 chr12 3359104 3359170 -140923319 + L3 LINE CR1 812 878 -699 2014 156 0 6 chr12 3359408 3359722 -140922767 - AluSx SINE Alu 0 312 1 3351 259 51 34 chr12 3359745 3360513 -140921976 - L1MEc LINE L1 -5063 1333 531 2584 50 0 10 chr12 3360513 3360816 -140921673 - AluY SINE Alu -11 300 1 3351 259 51 34 chr12 3360816 3361331 -140921158 - L1MEc LINE L1 -5865 531 27 535 321 139 29 chr12 3361681 3362127 -140920362 + L3 LINE CR1 1054 1548 -29 1665 184 3 14 chr12 3362791 3363085 -140919404 - AluJo SINE Alu -7 305 15 2598 53 0 10 chr12 3363108 3363410 -140919079 - AluY SINE Alu -12 299 1 443 167 0 10 chr12 3363414 3363515 -140918974 + L1MA7 LINE L1 6045 6153 -150 268 294 42 17 chr12 3363591 3363710 -140918779 - MIR SINE MIR -55 153 32 193 324 29 0 chr12 3364090 3364158 -140918331 - L2 LINE L2 -16 3256 3187 669 271 206 2 chr12 3364459 3364983 -140917506 - L2 LINE L2 -6 3307 2670 2176 141 0 3 chr12 3365014 3365327 -140917162 - AluJo SINE Alu 0 312 1 386 342 151 4 chr12 3365329 3365554 -140916935 - MIR SINE MIR -2 260 3 684 200 0 0 chr12 3366411 3366571 -140915918 + (CA)n Simple_repeat Simple_repeat 1 160 0 1813 170 0 3 chr12 3367170 3367477 -140915012 + AluJb SINE Alu 1 306 0 1699 233 71 99 chr12 3368934 3369623 -140912866 - HAL1 LINE L1 -839 1668 1012 2393 64 7 3 chr12 3369623 3369918 -140912571 - AluY SINE Alu -15 296 1 1699 233 71 99 chr12 3369918 3370209 -140912280 - HAL1 LINE L1 -1495 1012 715 2467 70 3 3 chr12 3370221 3370520 -140911969 + AluSq SINE Alu 2 300 -13 1193 255 184 22 chr12 3370521 3371058 -140911431 + HAL1 LINE L1 84 707 -1800 229 287 58 0 chr12 3371291 3371378 -140911111 + L2 LINE L2 3180 3271 -1 224 322 33 0 chr12 3371692 3371782 -140910707 + MIR3 SINE MIR 89 181 -27 544 307 13 42 chr12 3372041 3372279 -140910210 + MIR SINE MIR 20 250 -12 2106 118 13 26 chr12 3372310 3372616 -140909873 - AluSx SINE Alu -10 302 1 219 280 98 0 chr12 3372640 3372708 -140909781 - MIR SINE MIR -64 144 78 608 174 28 141 chr12 3372750 3372882 -140909607 - L1 LINE L1 -2711 3435 3290 2407 84 7 0 chr12 3372882 3373179 -140909310 - AluSp SINE Alu -14 299 1 608 174 28 141 chr12 3373179 3373370 -140909119 - L1 LINE L1 -2856 3290 3155 1683 188 9 31 chr12 3373370 3373689 -140908800 - AluJo SINE Alu 0 312 1 608 174 28 141 chr12 3373689 3373727 -140908762 - L1 LINE L1 -2991 3155 3114 670 265 151 12 chr12 3373754 3374078 -140908411 - L2 LINE L2 -8 3305 2937 277 289 56 106 chr12 3374712 3374794 -140907695 + L2 LINE L2 3138 3212 -60 1420 221 47 3 chr12 3374794 3375116 -140907373 - MER58B DNA MER1_type -4 337 2 277 289 56 106 chr12 3375116 3375175 -140907314 + L2 LINE L2 3212 3272 0 2209 113 27 0 chr12 3375272 3375565 -140906924 + AluSx SINE Alu 1 301 -11 3003 173 25 48 chr12 3375611 3376170 -140906319 - L1MB8 LINE L1 -10 6168 5627 1555 171 60 26 chr12 3376170 3376522 -140905967 - MLT1A1 LTR MaLR -1 364 1 3003 173 25 48 chr12 3376522 3376673 -140905816 - L1MB8 LINE L1 -551 5627 5474 433 290 34 111 chr12 3376930 3377192 -140905297 + MIR SINE MIR 9 250 -12 244 322 185 15 chr12 3377402 3377607 -140904882 - L3 LINE CR1 -223 1354 1115 455 293 105 6 chr12 3378710 3378891 -140903598 + MIR SINE MIR 45 243 -19 2416 93 7 0 chr12 3378967 3379277 -140903212 - AluSx SINE Alu 0 312 1 325 276 60 35 chr12 3380011 3380127 -140902362 - MIR SINE MIR -124 138 20 294 310 44 6 chr12 3380594 3380752 -140901737 + MIR3 SINE MIR 21 184 -24 325 274 85 13 chr12 3381671 3381824 -140900665 + MIR3 SINE MIR 23 186 -22 310 298 122 50 chr12 3381830 3381964 -140900525 - MIR SINE MIR -2 260 137 380 260 133 84 chr12 3381964 3382069 -140900420 + MER102b DNA MER1_type 3 101 -1327 2042 145 0 55 chr12 3382069 3382394 -140900095 - AluJb SINE Alu -5 307 1 380 260 133 84 chr12 3382394 3382611 -140899878 + MER102b DNA MER1_type 101 341 0 310 298 122 50 chr12 3382611 3382714 -140899775 - MIR SINE MIR -125 137 6 2316 54 54 0 chr12 3382771 3383048 -140899441 + AluY SINE Alu 1 292 -19 725 191 253 18 chr12 3383049 3383274 -140899215 - AluSg1 SINE Alu -30 279 2 512 281 41 12 chr12 3384357 3384528 -140897961 - MIR SINE MIR -3 259 84 425 272 44 34 chr12 3385061 3385149 -140897340 + L1ME4a LINE L1 5698 5784 -337 1966 94 87 11 chr12 3385149 3385426 -140897063 - AluSp SINE Alu -15 298 1 425 272 44 34 chr12 3385426 3385492 -140896997 + L1ME4a LINE L1 5784 5857 -264 1972 159 0 16 chr12 3385492 3385800 -140896689 + AluJo SINE Alu 1 303 -9 425 272 44 34 chr12 3385800 3385850 -140896639 + L1ME4a LINE L1 5857 5905 -216 329 256 128 17 chr12 3385868 3385985 -140896504 + L1ME4a LINE L1 5964 6093 -28 23 0 0 0 chr12 3386205 3386228 -140896261 + AT_rich Low_complexity Low_complexity 1 23 0 426 266 179 6 chr12 3386751 3386924 -140895565 + MIR SINE MIR 11 213 -49 1370 151 18 109 chr12 3386944 3387272 -140895217 - Tigger3b DNA MER2_type 0 1231 935 667 106 0 53 chr12 3387272 3387343 -140895146 - MSTA LTR MaLR 0 428 364 1630 158 102 11 chr12 3387343 3387628 -140894861 + AluJo SINE Alu 1 311 -1 667 106 0 53 chr12 3387628 3387669 -140894820 - MSTA LTR MaLR -64 364 322 591 141 11 0 chr12 3387679 3387771 -140894718 - FLAM_A SINE Alu -30 112 20 29 0 0 0 chr12 3387804 3387833 -140894656 + AT_rich Low_complexity Low_complexity 1 29 0 856 96 43 0 chr12 3387835 3387950 -140894539 + FLAM_C SINE Alu 1 120 -23 1264 118 50 57 chr12 3387950 3388077 -140894412 - Tigger3b DNA MER2_type -2565 463 337 2478 71 0 0 chr12 3388077 3388371 -140894118 - AluY SINE Alu -17 294 1 1264 118 50 57 chr12 3388371 3388505 -140893984 - Tigger3b DNA MER2_type -2691 337 204 592 149 0 47 chr12 3388515 3388622 -140893867 - FLAM_A SINE Alu -21 121 20 1136 191 15 0 chr12 3388648 3388847 -140893642 - Tigger3b DNA MER2_type -1026 205 4 730 142 18 0 chr12 3389161 3389274 -140893215 + FLAM_A SINE Alu 1 115 -18 2255 159 49 2 chr12 3389477 3389923 -140892566 - L1MB3 LINE L1 -2 6181 5715 729 329 29 0 chr12 3390189 3390435 -140892054 + MIR SINE MIR 4 256 -6 671 266 22 5 chr12 3391315 3391499 -140890990 + MIR SINE MIR 73 259 -3 309 287 167 6 chr12 3391859 3392033 -140890456 - MIR SINE MIR -6 256 55 441 313 60 20 chr12 3392120 3392321 -140890168 + MIR SINE MIR 53 261 -1 3808 178 30 14 chr12 3392476 3393248 -140889241 - L1MB5 LINE L1 0 6174 5391 204 383 57 19 chr12 3393252 3393461 -140889028 - L3 LINE CR1 -375 1202 986 22 0 0 0 chr12 3394092 3394114 -140888375 + AT_rich Low_complexity Low_complexity 1 22 0 219 280 187 0 chr12 3394646 3394721 -140887768 + MIR SINE MIR 94 182 -80 418 276 115 29 chr12 3395058 3395232 -140887257 - MIR3 SINE MIR 0 208 20 1708 156 0 11 chr12 3395819 3396102 -140886387 - AluJo SINE Alu -32 280 1 210 179 0 54 chr12 3396975 3397031 -140885458 - MIR SINE MIR -182 80 28 298 282 29 10 chr12 3397118 3397221 -140885268 - MIR SINE MIR -55 207 103 200 250 36 12 chr12 3398691 3398775 -140883714 + MIR SINE MIR 39 124 -84 1203 144 24 124 chr12 3399178 3399476 -140883013 - AluJb SINE Alu -10 302 35 1655 145 81 7 chr12 3400281 3400564 -140881925 - AluJb SINE Alu -8 304 1 203 195 24 0 chr12 3400840 3400881 -140881608 + MER5C DNA MER1_type 4 45 -279 383 258 172 8 chr12 3402727 3402855 -140879634 - MIR SINE MIR -33 229 81 3570 189 38 136 chr12 3403481 3404797 -140877692 - L1MC4a LINE L1 -87 7721 6545 248 0 31 0 chr12 3404798 3404830 -140877659 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1972 116 14 0 chr12 3404833 3405117 -140877372 - AluSx SINE Alu -24 288 1 771 268 91 25 chr12 3405142 3405385 -140877104 + MLT1C LTR MaLR 200 458 -9 464 261 29 7 chr12 3406762 3406900 -140875589 + MIR3 SINE MIR 65 205 -3 309 257 0 73 chr12 3407184 3407293 -140875196 - L2 LINE L2 -58 3255 3155 431 305 79 6 chr12 3407593 3407757 -140874732 + MIR SINE MIR 31 206 -56 813 238 11 32 chr12 3408296 3408485 -140874004 + MER3 DNA MER1_type 23 207 -2 306 235 29 0 chr12 3408871 3408939 -140873550 - MIR3 SINE MIR -24 184 115 481 295 8 14 chr12 3410424 3410592 -140871897 + MER5A DNA MER1_type 1 179 -10 357 336 69 23 chr12 3410684 3410901 -140871588 - L2 LINE L2 0 3272 3046 254 231 0 0 chr12 3411006 3411058 -140871431 - MIR SINE MIR -84 124 73 277 279 0 0 chr12 3411869 3411937 -140870552 + (TG)n Simple_repeat Simple_repeat 1 68 0 1181 85 0 0 chr12 3412503 3412656 -140869833 + AluSg/x SINE Alu 147 299 -13 2190 108 0 7 chr12 3413297 3413604 -140868885 - AluSx SINE Alu -7 305 1 189 0 0 0 chr12 3413784 3413805 -140868684 + (TGG)n Simple_repeat Simple_repeat 3 23 0 210 203 0 34 chr12 3414409 3414468 -140868021 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 216 67 0 0 chr12 3414563 3414593 -140867896 + (TG)n Simple_repeat Simple_repeat 1 30 0 291 28 0 0 chr12 3414727 3414763 -140867726 + (TG)n Simple_repeat Simple_repeat 1 36 0 183 156 0 0 chr12 3415289 3415321 -140867168 + CT-rich Low_complexity Low_complexity 1 32 0 644 280 18 0 chr12 3415739 3415907 -140866582 - Charlie8 DNA MER1_type -2246 171 1 875 196 31 18 chr12 3416169 3416332 -140866157 + FRAM SINE Alu 1 165 -11 2144 108 0 19 chr12 3417210 3417524 -140864965 - AluSx SINE Alu -4 308 1 2357 60 0 7 chr12 3417819 3418117 -140864372 - AluY SINE Alu -15 296 1 398 283 215 16 chr12 3418132 3418323 -140864166 + MIR SINE MIR 18 246 -16 222 315 111 9 chr12 3418350 3418458 -140864031 - MIR SINE MIR -70 138 20 2285 89 0 0 chr12 3419169 3419460 -140863029 + AluSg SINE Alu 12 302 -8 518 246 42 36 chr12 3419904 3420071 -140862418 + MIR3 SINE MIR 5 172 -36 1966 135 47 75 chr12 3420137 3420301 -140862188 + MLT1B LTR MaLR 1 168 -222 710 203 0 0 chr12 3420301 3420429 -140862060 + FLAM_C SINE Alu 1 128 -5 1966 135 47 75 chr12 3420429 3420665 -140861824 + MLT1B LTR MaLR 168 390 0 3905 152 47 46 chr12 3420676 3421654 -140860835 - L1MB8 LINE L1 -50 6128 5159 2142 95 3 7 chr12 3421654 3421949 -140860540 + AluSp SINE Alu 1 294 -19 3905 152 47 46 chr12 3421949 3422206 -140860283 - L1MB8 LINE L1 -1019 5159 4904 2093 132 80 66 chr12 3422446 3422489 -140860000 + MSTB1 LTR MaLR 1 42 -390 426 39 0 0 chr12 3422489 3422541 -140859948 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 817 204 7 7 chr12 3422542 3422694 -140859795 - FRAM SINE Alu -12 154 3 2093 132 80 66 chr12 3422694 3423074 -140859415 + MSTB1 LTR MaLR 41 432 0 248 244 179 0 chr12 3423813 3423891 -140858598 + L2 LINE L2 3222 3313 0 206 333 0 0 chr12 3425070 3425124 -140857365 + L2 LINE L2 3219 3272 0 358 338 14 0 chr12 3425381 3425529 -140856960 - MER117 DNA MER1_type -27 170 21 341 286 184 24 chr12 3425546 3425714 -140856775 + MIR3 SINE MIR 14 208 0 222 171 0 0 chr12 3426297 3426338 -140856151 - MIR SINE MIR -113 149 109 251 241 63 0 chr12 3427104 3427183 -140855306 - MIR3 SINE MIR 0 208 125 1102 244 74 36 chr12 3427291 3427501 -140854988 - L1ME3A LINE L1 -1 6169 5938 2376 90 0 0 chr12 3427501 3427813 -140854676 - AluSx SINE Alu 0 312 1 1102 244 74 36 chr12 3427813 3427967 -140854522 - L1ME3A LINE L1 -232 5938 5791 247 145 177 16 chr12 3427942 3428004 -140854485 - L1P2 LINE L1 -692 5463 5392 * 308 305 58 58 chr12 3430107 3430281 -140852208 + MIR SINE MIR 48 221 -41 569 231 137 40 chr12 3430675 3430916 -140851573 + MIR SINE MIR 3 257 -5 189 313 90 0 chr12 3431626 3431693 -140850796 + L2 LINE L2 2303 2375 -939 271 333 16 32 chr12 3431714 3431837 -140850652 + L2 LINE L2 2539 2659 -655 407 262 100 57 chr12 3431847 3432076 -140850413 + L2 LINE L2 3041 3279 -34 204 359 66 0 chr12 3433992 3434159 -140848330 + L2 LINE L2 2873 3050 -222 1401 169 64 14 chr12 3434215 3434510 -140847979 - AluJo SINE Alu -2 310 1 208 227 23 0 chr12 3434529 3434573 -140847916 + CT-rich Low_complexity Low_complexity 1 45 0 269 272 22 88 chr12 3434736 3434792 -140847697 + MIR3 SINE MIR 78 136 -72 1854 144 28 0 chr12 3434792 3435083 -140847406 - AluJo SINE Alu -13 299 1 269 272 22 88 chr12 3435083 3435162 -140847327 + MIR3 SINE MIR 136 204 -4 2558 39 0 0 chr12 3435290 3435598 -140846891 - AluY SINE Alu -3 308 1 203 216 20 0 chr12 3436843 3436894 -140845595 - L2 LINE L2 -31 3241 3190 23 0 0 0 chr12 3437811 3437834 -140844655 + AT_rich Low_complexity Low_complexity 1 23 0 2190 90 0 0 chr12 3437865 3438153 -140844336 - AluY SINE Alu -23 288 1 1996 132 0 0 chr12 3438160 3438449 -140844040 - AluSx SINE Alu -23 289 1 2184 104 0 10 chr12 3438998 3439307 -140843182 - AluSq SINE Alu -7 306 1 212 280 0 0 chr12 3439330 3439380 -140843109 + L2 LINE L2 3252 3301 -12 258 314 204 0 chr12 3440053 3440225 -140842264 - L3b LINE CR1 -154 1429 1223 573 258 96 40 chr12 3440829 3440951 -140841538 + MER112 DNA MER1_type 52 191 -69 1313 196 154 0 chr12 3440951 3441211 -140841278 + AluJo SINE Alu 1 300 -2 573 258 96 40 chr12 3441211 3441286 -140841203 + MER112 DNA MER1_type 191 260 0 182 240 20 0 chr12 3441614 3441664 -140840825 - L2 LINE L2 -20 3252 3202 381 318 94 5 chr12 3441683 3441906 -140840583 + L3 LINE CR1 1081 1323 -254 288 274 130 13 chr12 3442013 3442172 -140840317 - MIR SINE MIR -65 143 20 370 306 139 6 chr12 3442315 3442488 -140840001 - MIR SINE MIR -65 197 2 246 295 80 36 chr12 3443250 3443362 -140839127 - L2 LINE L2 0 3313 3197 378 345 63 11 chr12 3444278 3444452 -140838037 - MER5A DNA MER1_type 0 189 7 216 265 169 36 chr12 3444480 3444563 -140837926 + MIR SINE MIR 20 113 -95 1852 156 16 25 chr12 3444827 3445141 -140837348 + AluJb SINE Alu 1 311 -1 242 160 20 0 chr12 3445141 3445191 -140837298 + GA-rich Low_complexity Low_complexity 1 51 0 273 231 15 15 chr12 3445852 3445917 -140836572 - L2 LINE L2 -2 3311 3247 238 284 99 0 chr12 3446940 3447021 -140835468 - L2 LINE L2 0 3313 3225 * 734 263 232 3 chr12 3447009 3447259 -140835230 - L2 LINE L2 -189 3124 2932 282 29 0 0 chr12 3447259 3447294 -140835195 + (TG)n Simple_repeat Simple_repeat 2 36 0 734 263 232 3 chr12 3447294 3447410 -140835079 - L2 LINE L2 -381 2932 2686 667 239 133 16 chr12 3447626 3447814 -140834675 - MER63A DNA MER1_type 0 210 1 338 260 120 0 chr12 3448224 3448324 -140834165 + MIR SINE MIR 34 145 -63 197 118 0 0 chr12 3448907 3448941 -140833548 - MIR SINE MIR -113 149 116 234 0 0 0 chr12 3448947 3448973 -140833516 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 192 335 155 59 chr12 3449732 3450022 -140832467 - L2 LINE L2 -95 3177 2860 358 332 144 34 chr12 3451553 3451936 -140830553 - L2 LINE L2 0 3272 2848 327 277 134 8 chr12 3452152 3452271 -140830218 - MIR3 SINE MIR -3 205 72 605 307 131 65 chr12 3452384 3453515 -140828974 - L2 LINE L2 -3 3310 2127 300 321 49 56 chr12 3453734 3453896 -140828593 - MIR SINE MIR -96 166 6 229 265 0 0 chr12 3454541 3454590 -140827899 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 219 265 162 0 chr12 3454591 3454659 -140827830 - L2 LINE L2 -42 3271 3193 239 359 39 31 chr12 3454845 3454973 -140827516 - L2 LINE L2 -16 3256 3128 1971 162 3 0 chr12 3455100 3455403 -140827086 - AluJb SINE Alu -8 304 1 399 211 0 11 chr12 3457199 3457289 -140825200 + MIR SINE MIR 120 208 -54 483 288 25 16 chr12 3457760 3457945 -140824544 - MIR SINE MIR -44 218 30 342 155 0 82 chr12 3458416 3458610 -140823879 + (CACAG)n Simple_repeat Simple_repeat 3 180 0 451 162 0 104 chr12 3458658 3459058 -140823431 + (CCA)n Simple_repeat Simple_repeat 1 358 0 447 172 0 63 chr12 3458803 3459613 -140822876 + (CACAG)n Simple_repeat Simple_repeat 1 759 0 * 270 301 49 41 chr12 3459748 3459871 -140822618 + L2 LINE L2 3138 3261 -11 292 274 88 35 chr12 3459918 3460031 -140822458 - L2 LINE L2 0 3272 3154 21 36 0 0 chr12 3461535 3461563 -140820926 + GC_rich Low_complexity Low_complexity 1 28 0 370 283 42 0 chr12 3463201 3463321 -140819168 + MIR3 SINE MIR 42 166 -42 234 176 14 95 chr12 3463954 3464028 -140818461 + L2 LINE L2 3246 3313 0 221 208 0 21 chr12 3466949 3466997 -140815492 - L2 LINE L2 0 3313 3267 183 42 0 0 chr12 3467296 3467320 -140815169 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 544 339 60 3 chr12 3469590 3469672 -140812817 - L1ME3A LINE L1 -209 5961 5885 2331 97 0 0 chr12 3469672 3469980 -140812509 + AluSg SINE Alu 2 309 -1 544 339 60 3 chr12 3469980 3470195 -140812294 - L1ME3A LINE L1 -285 5885 5647 220 222 37 0 chr12 3470195 3470249 -140812240 - MER5C DNA MER1_type -2 322 267 2667 36 0 0 chr12 3470394 3470703 -140811786 + AluY SINE Alu 1 309 -2 1304 65 12 0 chr12 3470703 3470873 -140811616 + AluY SINE Alu 133 304 -7 517 283 105 61 chr12 3470917 3471453 -140811036 - L1ME3A LINE L1 -674 5659 5148 1967 152 0 7 chr12 3471453 3471762 -140810727 - AluJo SINE Alu -5 307 1 517 283 105 61 chr12 3471762 3472311 -140810178 - L1ME3A LINE L1 -1185 5148 4549 2113 134 0 0 chr12 3472679 3472986 -140809503 - AluSg SINE Alu -3 307 1 465 226 140 12 chr12 3472991 3473155 -140809334 - L1ME3A LINE L1 -1555 4591 4407 801 153 30 0 chr12 3473158 3473289 -140809200 - AluJo SINE Alu -177 135 1 866 236 10 10 chr12 3474709 3474908 -140807581 + MIR3 SINE MIR 5 203 -5 323 414 53 10 chr12 3478526 3478734 -140803755 + MIR SINE MIR 23 239 -23 1412 62 42 10 chr12 3480388 3480580 -140801909 + L1PA7 LINE L1 5957 6154 0 2135 103 34 0 chr12 3480589 3480880 -140801609 + AluSq SINE Alu 1 301 -12 186 86 0 86 chr12 3481003 3481038 -140801451 - MIR SINE MIR -220 42 11 2175 124 0 3 chr12 3482069 3482375 -140800114 - AluSx SINE Alu -7 305 1 1748 163 51 0 chr12 3482382 3482658 -140799831 - AluJo SINE Alu -22 290 1 267 323 30 20 chr12 3482845 3482944 -140799545 - L2 LINE L2 -4 3268 3169 214 309 60 48 chr12 3484360 3484444 -140798045 + MIR SINE MIR 108 192 -70 573 263 13 13 chr12 3484571 3484727 -140797762 - MER5B DNA MER1_type -13 165 10 199 354 62 26 chr12 3484828 3484941 -140797548 - L3b LINE CR1 -198 1385 1269 347 342 37 43 chr12 3485089 3485276 -140797213 - MIR3 SINE MIR -7 201 16 600 123 0 0 chr12 3487277 3487358 -140795131 + FLAM_A SINE Alu 44 124 -18 774 32 0 0 chr12 3487369 3487462 -140795027 + (TG)n Simple_repeat Simple_repeat 2 94 0 332 281 0 0 chr12 3487462 3487526 -140794963 - L1MC4 LINE L1 -1341 6701 6638 519 202 0 0 chr12 3487530 3487614 -140794875 - FRAM/FAM SINE Alu -93 83 1 495 279 127 33 chr12 3488709 3488783 -140793706 - MIR SINE MIR -6 256 190 1729 164 0 50 chr12 3488783 3489100 -140793389 + AluJo SINE Alu 1 301 -11 495 279 127 33 chr12 3489100 3489254 -140793235 - MIR SINE MIR -72 190 15 1150 204 109 48 chr12 3489443 3489883 -140792606 - MLT1C LTR MaLR 0 467 1 23 0 0 0 chr12 3491817 3491840 -140790649 + AT_rich Low_complexity Low_complexity 1 23 0 274 271 112 9 chr12 3491928 3492035 -140790454 + MIR SINE MIR 20 137 -71 374 314 52 7 chr12 3493267 3493420 -140789069 - MER5B DNA MER1_type -2 176 17 234 339 57 24 chr12 3493505 3493739 -140788750 - L3 LINE CR1 -106 1471 1190 377 294 12 12 chr12 3494212 3494375 -140788114 - L1ME3A LINE L1 -220 5950 5788 287 285 46 46 chr12 3494379 3494509 -140787980 - L1ME3A LINE L1 -423 5739 5610 194 265 0 82 chr12 3495095 3495193 -140787296 + L2 LINE L2 3205 3294 -19 2345 51 0 69 chr12 3495595 3495929 -140786560 + AluY SINE Alu 1 311 0 492 18 0 0 chr12 3495934 3495991 -140786498 + (TA)n Simple_repeat Simple_repeat 2 58 0 489 303 82 26 chr12 3496048 3496243 -140786246 + MIR SINE MIR 1 206 -56 519 346 13 34 chr12 3496832 3497069 -140785420 + MIR SINE MIR 15 246 -16 * 725 286 95 9 chr12 3497006 3497237 -140785252 - MIR SINE MIR 0 262 12 220 336 89 59 chr12 3497581 3497852 -140784637 - L2 LINE L2 -21 3251 2973 228 217 22 0 chr12 3498734 3498780 -140783709 + C-rich Low_complexity Low_complexity 1 47 0 338 292 84 8 chr12 3498853 3499005 -140783484 - MIR3 SINE MIR -62 146 4 211 288 62 12 chr12 3500372 3500452 -140782037 - MIR SINE MIR -101 107 24 442 305 64 11 chr12 3500759 3500946 -140781543 - L1MC5 LINE L1 -36 7925 7729 365 291 88 20 chr12 3501175 3501323 -140781166 - MIR SINE MIR -102 160 3 250 306 24 12 chr12 3501341 3501426 -140781063 - MIR SINE MIR -176 86 1 793 336 48 12 chr12 3501572 3501986 -140780503 + L1ME LINE L1 5355 5783 -338 336 341 61 12 chr12 3503118 3503282 -140779207 - MIR3 SINE MIR -36 172 1 201 306 32 0 chr12 3503436 3503498 -140778991 + MIR SINE MIR 58 121 -87 404 318 80 17 chr12 3503990 3504166 -140778323 - MIR SINE MIR -6 256 70 2180 149 96 15 chr12 3506680 3507076 -140775413 - MSTA LTR MaLR 0 428 1 183 351 108 18 chr12 3508044 3508155 -140774334 + L3b LINE CR1 1461 1581 -2 223 323 50 10 chr12 3509300 3509399 -140773090 - MIR SINE MIR -56 206 104 359 330 54 0 chr12 3510446 3510558 -140771931 - MIR SINE MIR -61 147 30 250 316 13 0 chr12 3511671 3511750 -140770739 + CT-rich Low_complexity Low_complexity 3 82 0 329 271 30 8 chr12 3512195 3512328 -140770161 - L1ME4a LINE L1 -5 6116 5981 538 234 86 25 chr12 3514057 3514254 -140768235 + MIR SINE MIR 34 242 -20 193 268 115 70 chr12 3514536 3514693 -140767796 + MER5A DNA MER1_type 3 166 -23 195 376 30 0 chr12 3514774 3514875 -140767614 + MIR SINE MIR 150 253 -9 352 381 22 0 chr12 3515301 3515440 -140767049 - MIR SINE MIR 0 262 121 291 300 44 0 chr12 3519810 3519900 -140762589 - MIR SINE MIR -92 170 77 431 296 379 4 chr12 3520138 3520713 -140761776 - L2 LINE L2 -2 3311 2498 316 311 57 0 chr12 3520737 3520843 -140761646 - L2 LINE L2 -935 2379 2268 190 309 160 11 chr12 3521260 3521354 -140761135 - L2 LINE L2 -5 3308 3201 637 239 49 117 chr12 3521928 3522192 -140760297 - MIR SINE MIR -2 260 15 188 227 114 0 chr12 3523618 3523662 -140758827 + MIR SINE MIR 84 132 -76 291 254 156 18 chr12 3523771 3523909 -140758580 + MIR SINE MIR 35 187 -65 431 321 45 0 chr12 3523912 3524046 -140758443 - MIR3 SINE MIR 0 208 69 470 322 103 14 chr12 3525435 3525649 -140756840 - MIR SINE MIR -1 261 29 330 298 124 8 chr12 3526553 3526674 -140755815 + MIR SINE MIR 49 183 -79 409 316 75 0 chr12 3526997 3527130 -140755359 + MIR SINE MIR 100 242 -20 211 329 106 29 chr12 3527982 3528152 -140754337 - MIR SINE MIR 0 262 80 232 46 32 208 chr12 3529958 3530174 -140752315 + (CCCTG)n Simple_repeat Simple_repeat 2 179 0 471 287 98 6 chr12 3531975 3532139 -140750350 + L3 LINE CR1 913 1091 -486 325 282 17 86 chr12 3532149 3532323 -140750166 + L3 LINE CR1 1291 1452 -125 323 95 5 0 chr12 3533229 3533289 -140749200 - Alu SINE Alu -265 43 1 228 268 14 14 chr12 3533879 3533950 -140748539 - L2 LINE L2 -40 3273 3203 1193 178 53 0 chr12 3534765 3534973 -140747516 - MER20 DNA MER1_type 0 219 1 286 238 107 0 chr12 3535023 3535107 -140747382 - MIR3 SINE MIR -32 176 84 289 309 41 0 chr12 3536671 3536768 -140745721 + L2 LINE L2 2504 2604 -710 1218 308 63 9 chr12 3536907 3537566 -140744923 + L2 LINE L2 2614 3311 -2 190 330 65 60 chr12 3537599 3537784 -140744705 + L2 LINE L2 3072 3257 -15 198 337 51 10 chr12 3537796 3537894 -140744595 - MIR SINE MIR -33 229 128 356 299 81 40 chr12 3538801 3538975 -140743514 - MIR SINE MIR -2 260 80 310 197 0 15 chr12 3540043 3540109 -140742380 + L3 LINE CR1 1397 1461 -116 284 286 20 10 chr12 3540524 3540622 -140741867 - MIR SINE MIR -16 246 148 224 307 29 21 chr12 3542205 3542345 -140740144 + (CTGGGG)n Simple_repeat Simple_repeat 2 142 0 1248 192 54 23 chr12 3543109 3543369 -140739120 - AluJo SINE Alu -11 301 34 478 342 114 22 chr12 3548864 3549541 -140732948 - L2 LINE L2 -14 3258 2473 368 343 122 9 chr12 3549825 3550038 -140732451 + MIR SINE MIR 20 256 -6 1979 166 8 45 chr12 3550835 3551120 -140731369 + MER47A DNA MER2_type 1 270 -2053 2349 78 0 0 chr12 3551120 3551415 -140731074 - AluY SINE Alu -16 295 1 1979 166 8 45 chr12 3551415 3551508 -140730981 + MER47A DNA MER2_type 270 365 -1 2202 97 10 3 chr12 3551952 3552262 -140730227 - AluSq SINE Alu -1 312 1 840 142 0 8 chr12 3554059 3554193 -140728296 + FLAM_C SINE Alu 1 133 -10 216 0 0 0 chr12 3554350 3554374 -140728115 + (CAGGG)n Simple_repeat Simple_repeat 1 24 0 621 184 155 30 chr12 3554545 3554713 -140727776 + MER5A DNA MER1_type 1 189 0 331 307 150 13 chr12 3555702 3555855 -140726634 + MIR SINE MIR 86 259 -3 1817 173 0 3 chr12 3557840 3558141 -140724348 + AluJb SINE Alu 1 300 -12 387 242 44 0 chr12 3559117 3559208 -140723281 - MER5A DNA MER1_type -94 95 1 243 256 13 26 chr12 3559275 3559353 -140723136 - MER5A DNA MER1_type -93 96 20 216 0 0 0 chr12 3562014 3562038 -140720451 + (T)n Simple_repeat Simple_repeat 1 24 0 477 312 91 9 chr12 3562081 3562312 -140720177 - MIR SINE MIR -12 250 1 318 285 49 41 chr12 3562493 3562616 -140719873 + MIR SINE MIR 69 192 -70 450 288 142 14 chr12 3562664 3562883 -140719606 - MIR SINE MIR -15 247 1 219 186 0 0 chr12 3563156 3563199 -140719290 + (CA)n Simple_repeat Simple_repeat 1 43 0 1474 159 69 0 chr12 3563216 3563492 -140718997 + MER2 DNA MER2_type 48 342 -3 531 92 0 0 chr12 3563496 3563583 -140718906 + (CA)n Simple_repeat Simple_repeat 2 88 0 368 294 10 0 chr12 3565701 3565803 -140716686 + MIR SINE MIR 128 230 -32 852 250 88 0 chr12 3566682 3566874 -140715615 + MER3 DNA MER1_type 1 209 0 513 279 101 6 chr12 3567287 3567466 -140715023 - MIR SINE MIR -41 221 26 620 303 100 77 chr12 3568758 3569197 -140713292 - L2 LINE L2 0 3272 2824 373 272 105 42 chr12 3570397 3570588 -140711901 - MER115 DNA AcHobo -490 203 1 191 220 51 17 chr12 3572168 3572227 -140710262 + L2 LINE L2 2907 2967 -346 1121 186 48 5 chr12 3572780 3572990 -140709499 + MER20 DNA MER1_type 1 219 0 625 300 18 66 chr12 3573890 3574163 -140708326 - MIR SINE MIR 0 262 3 235 309 47 40 chr12 3574759 3574908 -140707581 + L2 LINE L2 2898 3047 -225 694 161 23 31 chr12 3576602 3576732 -140705757 + FLAM_C SINE Alu 15 143 0 315 0 0 0 chr12 3576785 3576820 -140705669 + (TG)n Simple_repeat Simple_repeat 1 35 0 240 298 64 0 chr12 3579607 3579701 -140702788 + (CATG)n Simple_repeat Simple_repeat 3 102 0 218 317 0 0 chr12 3580378 3580438 -140702051 + L3 LINE CR1 1511 1570 -7 1202 228 96 8 chr12 3580915 3581270 -140701219 - MER88 LTR ERVL 0 464 79 304 340 62 7 chr12 3581328 3581472 -140701017 + MIR SINE MIR 83 234 -28 1010 209 78 76 chr12 3582939 3583361 -140699128 + L1MC5 LINE L1 7316 7738 -223 342 250 40 75 chr12 3583349 3583601 -140698888 + L1MC5 LINE L1 7668 7910 -51 * 603 222 6 11 chr12 3583646 3583822 -140698667 + GA-rich Low_complexity Low_complexity 5 179 0 537 289 115 9 chr12 3584282 3584500 -140697989 - MIR SINE MIR -12 250 10 332 279 175 25 chr12 3584623 3584825 -140697664 - MIR3 SINE MIR -31 231 3 375 294 17 100 chr12 3585503 3585683 -140696806 - MIR SINE MIR -50 212 48 733 214 40 23 chr12 3585860 3586033 -140696456 + MER104 DNA MER2_type 1 176 -4 385 311 19 0 chr12 3586181 3586287 -140696202 + MIR SINE MIR 43 150 -58 462 197 242 0 chr12 3586866 3586998 -140695491 + MER5B DNA MER1_type 15 178 0 595 295 6 22 chr12 3587733 3587916 -140694573 + MIR3 SINE MIR 1 180 -28 197 304 0 38 chr12 3588782 3588861 -140693628 + L2 LINE L2 2409 2484 -830 202 306 69 38 chr12 3588957 3589117 -140693372 + L2 LINE L2 2718 2882 -432 343 306 45 0 chr12 3589177 3589288 -140693201 + MIR SINE MIR 6 121 -141 291 329 85 53 chr12 3589812 3590058 -140692431 - L2 LINE L2 -1 3271 3018 213 175 0 0 chr12 3590770 3590810 -140691679 + GA-rich Low_complexity Low_complexity 1 40 0 491 299 51 13 chr12 3590810 3590967 -140691522 - MIR3 SINE MIR -29 179 17 2610 79 56 0 chr12 3591147 3591502 -140690987 + THE1C LTR MaLR 1 375 0 397 212 62 0 chr12 3592330 3592443 -140690046 - MER112 DNA MER1_type -8 252 133 1993 167 29 31 chr12 3592444 3593000 -140689489 - MLT2A2 LTR ERVL 0 554 1 386 313 154 39 chr12 3593161 3593311 -140689178 - MIR SINE MIR -1 261 73 1353 208 80 55 chr12 3593311 3593676 -140688813 - MLT1A2 LTR MaLR 0 374 1 386 313 154 39 chr12 3593676 3593758 -140688731 - MIR SINE MIR -189 73 2 304 297 99 0 chr12 3593996 3594107 -140688382 + L2 LINE L2 3188 3309 -4 282 280 102 8 chr12 3594126 3594244 -140688245 + MIR SINE MIR 25 153 -109 500 196 11 0 chr12 3595312 3595404 -140687085 - MER81 DNA DNA -21 93 1 606 333 135 8 chr12 3595462 3595930 -140686559 + L2 LINE L2 2100 2626 -688 227 285 39 54 chr12 3595935 3595969 -140686520 + L1ME4a LINE L1 5992 6025 -96 1843 227 44 24 chr12 3595969 3596427 -140686062 + MLT1C LTR MaLR 1 467 0 227 285 39 54 chr12 3596427 3596522 -140685967 + L1ME4a LINE L1 6025 6119 -2 1016 211 123 55 chr12 3596616 3597035 -140685454 + MER110A LTR ERV1 67 491 0 270 305 144 0 chr12 3597068 3597186 -140685303 - MIR SINE MIR -112 150 16 226 147 0 0 chr12 3597320 3597354 -140685135 + MER54A LTR ERVL 532 565 -336 240 35 0 0 chr12 3598289 3598318 -140684171 + (TC)n Simple_repeat Simple_repeat 1 29 0 183 200 50 0 chr12 3598460 3598500 -140683989 - MIR SINE MIR -58 150 109 943 206 83 13 chr12 3598525 3598753 -140683736 + MIR SINE MIR 19 262 0 281 210 62 62 chr12 3599839 3599920 -140682569 - MIR3 SINE MIR -5 203 123 495 168 31 20 chr12 3600052 3600166 -140682323 + MIR SINE MIR 1 119 -89 793 260 72 13 chr12 3600171 3600406 -140682083 - MIR SINE MIR -11 251 3 662 274 29 20 chr12 3600532 3600736 -140681753 + MLT1J LTR MaLR 4 209 -302 776 325 6 0 chr12 3600736 3601074 -140681415 - L1M4 LINE L1 -3427 2719 2380 2323 88 0 20 chr12 3601101 3601398 -140681091 - AluSp SINE Alu -22 291 1 934 242 30 30 chr12 3601399 3601663 -140680826 + MLT1J LTR MaLR 199 462 -49 183 232 24 61 chr12 3603399 3603481 -140679008 + MIR SINE MIR 59 137 -125 617 205 108 30 chr12 3603489 3603617 -140678872 - MER5A DNA MER1_type 0 189 44 418 227 27 36 chr12 3603617 3603727 -140678762 + MER81 DNA DNA 2 110 -4 617 205 108 30 chr12 3603727 3603764 -140678725 - MER5A DNA MER1_type -145 44 11 236 100 0 50 chr12 3603769 3603809 -140678680 + L3 LINE CR1 1532 1569 -8 371 285 78 90 chr12 3604460 3604870 -140677619 - L2 LINE L2 -1 3271 2867 186 43 0 0 chr12 3605058 3605081 -140677408 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1521 150 8 0 chr12 3605082 3605335 -140677154 - L1MA8 LINE L1 -402 5889 5635 1319 118 78 96 chr12 3605339 3605568 -140676921 + L1MA8 LINE L1 5867 6098 -214 1561 71 66 0 chr12 3605568 3605780 -140676709 - L1PA6 LINE L1 -5 6149 5924 2552 60 0 13 chr12 3605785 3606086 -140676403 - AluY SINE Alu -7 304 8 1319 118 78 96 chr12 3606086 3606146 -140676343 + L1MA8 LINE L1 6102 6162 -150 363 22 0 0 chr12 3606146 3606192 -140676297 - MADE1 DNA Mariner 0 80 35 1319 118 78 96 chr12 3606192 3606298 -140676191 + L1MA8 LINE L1 6162 6289 -23 247 215 129 21 chr12 3606782 3606875 -140675614 - MIR SINE MIR -86 122 20 507 268 56 0 chr12 3606907 3607049 -140675440 - MIR SINE MIR -1 261 112 1131 83 0 0 chr12 3607419 3607575 -140674914 + (TTCC)n Simple_repeat Simple_repeat 1 156 0 1893 135 0 0 chr12 3607583 3607843 -140674646 - AluSx SINE Alu -52 260 1 453 269 27 54 chr12 3608335 3608484 -140674005 + MIR SINE MIR 48 192 -70 183 278 37 0 chr12 3609148 3609202 -140673287 + MIR SINE MIR 42 97 -111 415 212 59 34 chr12 3609364 3609386 -140673103 - MIR SINE MIR -32 230 210 1387 184 34 13 chr12 3609386 3609620 -140672869 + MER8 DNA MER2_type 1 239 0 415 212 59 34 chr12 3609620 3609715 -140672774 - MIR SINE MIR -52 210 110 265 257 40 0 chr12 3609717 3609791 -140672698 - MER94 DNA DNA -33 101 25 263 278 56 0 chr12 3610907 3610979 -140671510 - MIR SINE MIR -70 192 117 437 240 48 10 chr12 3611308 3611412 -140671077 + MER91C DNA MER1_type 31 138 -2 599 263 78 10 chr12 3611793 3611986 -140670503 + MLT1J LTR MaLR 2 175 -275 859 213 41 0 chr12 3612092 3612261 -140670228 - MER5A DNA MER1_type -1 188 13 381 191 77 101 chr12 3612261 3612429 -140670060 + MLT1J LTR MaLR 312 475 -36 204 333 141 15 chr12 3613511 3613646 -140668843 - L2 LINE L2 0 3272 3121 388 212 80 80 chr12 3614615 3614766 -140667723 + MIR3 SINE MIR 3 153 -55 203 312 39 39 chr12 3615071 3615148 -140667341 - MIR3 SINE MIR -2 206 130 316 113 0 0 chr12 3615201 3615254 -140667235 - L1MB4 LINE L1 -1 6179 6127 190 286 65 26 chr12 3616055 3616132 -140666357 + MIR SINE MIR 68 147 -115 199 171 24 146 chr12 3616832 3616914 -140665575 - MIR3 SINE MIR -132 76 5 273 259 133 49 chr12 3617479 3617622 -140664867 - MIR3 SINE MIR -30 178 24 823 262 59 5 chr12 3618152 3618373 -140664116 + MIR SINE MIR 30 262 0 204 146 122 0 chr12 3618764 3618805 -140663684 + MIR SINE MIR 96 141 -67 781 146 129 23 chr12 3618956 3619127 -140663362 - MER5A DNA MER1_type 0 189 1 413 295 29 0 chr12 3619139 3619244 -140663245 + MER5B DNA MER1_type 8 115 -63 672 173 36 36 chr12 3619312 3619480 -140663009 - MER58C DNA MER1_type -1 214 47 2491 213 45 12 chr12 3620466 3621043 -140661446 + MER45B DNA AcHobo 1 596 -444 1031 152 35 23 chr12 3621060 3621231 -140661258 + AluJb SINE Alu 131 303 -9 841 164 0 0 chr12 3621527 3621655 -140660834 - FLAM_C SINE Alu -5 128 1 415 311 26 1 chr12 3622417 3622572 -140659917 - MIR SINE MIR -39 169 3 2521 58 7 10 chr12 3623083 3623392 -140659097 + AluY SINE Alu 1 308 -3 600 287 164 15 chr12 3624316 3624584 -140657905 - L2 LINE L2 -1 3312 3005 266 287 49 33 chr12 3624599 3624721 -140657768 - MIR SINE MIR -62 146 23 1233 131 0 0 chr12 3624773 3624941 -140657548 + AluSq SINE Alu 1 168 -145 195 42 0 0 chr12 3625044 3625068 -140657421 + (TCCCC)n Simple_repeat Simple_repeat 3 26 0 241 291 82 68 chr12 3625571 3625777 -140656712 - MIR SINE MIR -42 220 12 22 56 0 0 chr12 3626711 3626747 -140655742 + GC_rich Low_complexity Low_complexity 1 36 0 345 284 18 0 chr12 3628456 3628565 -140653924 + LTR16A LTR ERVL 239 349 -101 259 191 15 73 chr12 3628750 3628818 -140653671 + LTR16A LTR ERVL 382 445 -5 1083 204 24 67 chr12 3629342 3629715 -140652774 - Charlie5 DNA MER1_type -22 2590 2234 527 248 0 16 chr12 3629718 3629843 -140652646 - MER3 DNA MER1_type -47 162 40 201 237 0 0 chr12 3630279 3630317 -140652172 + MIR SINE MIR 113 150 -58 315 0 0 0 chr12 3630752 3630787 -140651702 + (CA)n Simple_repeat Simple_repeat 1 35 0 282 146 42 0 chr12 3631203 3631251 -140651238 - AluJ/FLAM SINE Alu -240 62 13 420 167 0 0 chr12 3631257 3631329 -140651160 + FLAM SINE Alu 53 124 -19 282 73 0 0 chr12 3631341 3631382 -140651107 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 341 291 26 51 chr12 3632256 3632373 -140650116 - HAL1b LINE L1 -13 1335 1222 294 291 91 43 chr12 3632406 3632660 -140649829 - L1ME4a LINE L1 -225 5896 5631 196 169 17 34 chr12 3632698 3632757 -140649732 + (CATA)n Simple_repeat Simple_repeat 4 61 0 759 299 66 71 chr12 3633055 3633507 -140648982 + L1MEc LINE L1 2061 2510 -3886 1245 150 75 66 chr12 3633609 3633929 -140648560 + MER33 DNA MER1_type 2 324 0 713 209 20 0 chr12 3635178 3635326 -140647163 + MER45A DNA AcHobo 28 178 0 306 0 0 0 chr12 3635498 3635532 -140646957 + (TGG)n Simple_repeat Simple_repeat 1 34 0 344 352 39 66 chr12 3635596 3635852 -140646637 + L2 LINE L2 2835 3083 -189 437 376 73 6 chr12 3636408 3636573 -140645916 + MER91A DNA MER1_type 16 191 -5 304 304 123 0 chr12 3637137 3637275 -140645214 - MIR3 SINE MIR -7 201 47 2177 94 31 22 chr12 3637371 3637690 -140644799 + THE1B LTR MaLR 1 322 -42 580 216 153 51 chr12 3638410 3638665 -140643824 + L2 LINE L2 3030 3310 -3 673 70 0 0 chr12 3638667 3638779 -140643710 + L1PA10 LINE L1 6060 6171 0 329 277 50 10 chr12 3639176 3639277 -140643212 - MER91C DNA MER1_type -35 105 1 918 279 60 53 chr12 3639351 3640031 -140642458 + L2 LINE L2 2630 3313 0 264 365 83 6 chr12 3640439 3640595 -140641894 + MIR SINE MIR 33 200 -62 5049 199 32 23 chr12 3642363 3644139 -140638350 - L1MD1 LINE L1 -2 6240 4455 1910 147 68 34 chr12 3644139 3644492 -140637997 + MLT1A1 LTR MaLR 1 365 0 5049 199 32 23 chr12 3644492 3645082 -140637407 - L1MD1 LINE L1 -1787 4455 3872 440 289 39 19 chr12 3645122 3645278 -140637211 - MLT1L LTR MaLR -11 604 446 417 188 145 0 chr12 3645351 3645468 -140637021 - MLT1L LTR MaLR -314 301 168 519 238 19 0 chr12 3645537 3645642 -140636847 - MER20B DNA MER1_type -608 175 69 554 261 24 6 chr12 3645840 3646005 -140636484 - MIR SINE MIR -8 254 87 255 103 0 0 chr12 3646628 3646667 -140635822 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 204 373 0 0 chr12 3647260 3647327 -140635162 + (TCCA)n Simple_repeat Simple_repeat 1 67 0 2368 98 10 0 chr12 3647418 3647724 -140634765 - AluSg SINE Alu -1 309 1 209 349 39 39 chr12 3647741 3647870 -140634619 + L2 LINE L2 3136 3264 -8 182 222 0 0 chr12 3648336 3648372 -140634117 - L2 LINE L2 -15 3298 3263 1882 237 55 101 chr12 3648398 3649271 -140633218 - L1MC4 LINE L1 0 8042 7210 732 208 42 21 chr12 3649278 3649470 -140633019 - MIR SINE MIR -64 198 3 403 250 27 0 chr12 3649926 3650038 -140632451 - MIR3 SINE MIR -41 167 53 186 43 0 0 chr12 3650176 3650199 -140632290 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 247 294 56 24 chr12 3650208 3650334 -140632155 - L2 LINE L2 -1 3271 3142 631 253 34 11 chr12 3651240 3651418 -140631071 - MIR SINE MIR -69 193 12 350 264 33 33 chr12 3651515 3651636 -140630853 + L2 LINE L2 3148 3268 -4 642 279 140 17 chr12 3651842 3652380 -140630109 - L2 LINE L2 0 3313 2704 325 305 141 8 chr12 3652394 3652522 -140629967 + L2 LINE L2 3126 3270 -2 222 348 43 27 chr12 3652719 3652906 -140629583 - L2 LINE L2 -359 2955 2766 25 0 0 0 chr12 3652906 3652931 -140629558 + AT_rich Low_complexity Low_complexity 1 25 0 43926 32 23 1 chr12 3652931 3658950 -140623539 - L1PA3 LINE L1 -4 6151 1 285 237 64 103 chr12 3660673 3660734 -140621755 + L1ME LINE L1 5578 5640 -481 14380 134 15 2 chr12 3660734 3661581 -140620908 + L1PA11 LINE L1 2994 3828 -2346 2385 95 10 10 chr12 3661581 3661886 -140620603 + AluSp SINE Alu 1 305 -8 14380 134 15 2 chr12 3661886 3664209 -140618280 + L1PA11 LINE L1 3828 6174 0 285 237 64 103 chr12 3664209 3664303 -140618186 + L1ME LINE L1 5640 5727 -394 2311 98 10 0 chr12 3664318 3664615 -140617874 + AluSx SINE Alu 5 304 -8 266 247 93 10 chr12 3664705 3664802 -140617687 - L1MC4 LINE L1 -9 8033 7929 21 36 0 0 chr12 3664955 3664983 -140617506 + AT_rich Low_complexity Low_complexity 1 28 0 707 212 28 79 chr12 3665112 3665348 -140617141 - L1ME3A LINE L1 -33 6129 5911 895 271 48 11 chr12 3665351 3665724 -140616765 - L1M4 LINE L1 -3487 3680 3294 2740 97 14 3 chr12 3665730 3666101 -140616388 - THE1C LTR MaLR 0 375 1 9742 114 49 38 chr12 3666101 3667660 -140614829 - THE1C-int LTR MaLR 0 1580 4 2963 85 0 0 chr12 3667662 3668037 -140614452 - THE1C LTR MaLR 0 375 1 2913 174 14 86 chr12 3668037 3668829 -140613660 - L1M4 LINE L1 -4338 2830 2096 390 174 41 0 chr12 3668839 3668937 -140613552 + CT-rich Low_complexity Low_complexity 4 105 0 1566 217 0 10 chr12 3668945 3669249 -140613240 - AluJb SINE Alu -7 305 5 7016 200 40 21 chr12 3669249 3670696 -140611793 - L1M4 LINE L1 -5048 2120 646 2422 92 0 0 chr12 3671217 3671523 -140610966 - AluSg SINE Alu -4 306 1 991 183 213 39 chr12 3672287 3672648 -140609841 + MSTC LTR MaLR 1 424 -4 328 221 29 0 chr12 3672653 3672717 -140609772 - MER2 DNA MER2_type 0 345 280 4009 118 62 6 chr12 3672717 3673377 -140609112 - Tigger3(Golem) DNA MER2_type -1 3028 2332 647 149 79 0 chr12 3673380 3673494 -140608995 + THE1B LTR MaLR 1 123 -252 1077 98 0 0 chr12 3673497 3673629 -140608860 - AluSg SINE Alu -178 132 1 377 82 0 33 chr12 3673867 3673928 -140608561 - AluSq/x SINE Alu -163 139 81 * 1699 129 4 0 chr12 3673919 3674160 -140608329 + THE1B LTR MaLR 123 364 0 1133 113 0 0 chr12 3674160 3674319 -140608170 - Tigger3(Golem) DNA MER2_type -695 2334 2176 925 199 25 0 chr12 3674308 3674469 -140608020 - Tigger3(Golem) DNA MER2_type -2864 165 1 * 1290 131 29 5 chr12 3674508 3674714 -140607775 - MER2 DNA MER2_type -134 211 1 392 248 70 16 chr12 3674726 3674855 -140607634 + L1ME4a LINE L1 5969 6104 -17 487 138 99 138 chr12 3674966 3675118 -140607371 - MER21B LTR ERV1 -19 912 693 660 203 29 37 chr12 3675329 3675499 -140606990 - LTR1B LTR ERV1 -62 1216 332 428 263 134 12 chr12 3675550 3675731 -140606758 - LTR1 LTR ERV1 -568 217 48 3699 158 51 3 chr12 3675731 3676340 -140606149 - MER21B LTR ERV1 -225 638 1 404 214 101 44 chr12 3676439 3676598 -140605891 - MIR3 SINE MIR -23 185 18 941 251 22 4 chr12 3678596 3678823 -140603666 + MIR SINE MIR 32 262 0 276 292 45 0 chr12 3679859 3679948 -140602541 - MIR SINE MIR -78 130 38 553 139 19 0 chr12 3680673 3680781 -140601708 + GA-rich Low_complexity Low_complexity 1 110 0 380 163 0 81 chr12 3680995 3681081 -140601408 + MIR SINE MIR 73 151 -111 276 114 0 0 chr12 3682838 3682882 -140599607 + MIR SINE MIR 101 144 -64 1757 204 54 36 chr12 3683090 3683320 -140599169 - LTR2 LTR ERV1 0 449 206 228 67 0 0 chr12 3683320 3683350 -140599139 + (CAGAA)n Simple_repeat Simple_repeat 1 30 0 1757 204 54 36 chr12 3683350 3683560 -140598929 - LTR2 LTR ERV1 -243 206 1 33233 113 40 51 chr12 3683560 3690690 -140591799 - Harlequin LTR ERV1 0 6896 1 1982 192 66 27 chr12 3690690 3691132 -140591357 - LTR2B LTR ERV1 0 490 32 338 248 193 0 chr12 3691485 3691594 -140590895 - L2 LINE L2 0 3272 3143 381 321 137 18 chr12 3691735 3692012 -140590477 - L2 LINE L2 -439 2875 2566 253 320 120 16 chr12 3692267 3692576 -140589913 - L2 LINE L2 -1245 2069 1729 186 118 0 0 chr12 3693481 3693515 -140588974 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 515 320 65 7 chr12 3693670 3693945 -140588544 - L1ME LINE L1 -504 5660 5370 726 212 26 36 chr12 3694085 3694278 -140588211 - MIR SINE MIR -14 248 58 2198 98 28 0 chr12 3694334 3694620 -140587869 - AluSx SINE Alu -18 294 1 2335 109 0 0 chr12 3695673 3695985 -140586504 - AluSx SINE Alu 0 312 1 2400 93 3 0 chr12 3696226 3696536 -140585953 - AluY SINE Alu 0 311 1 182 37 37 0 chr12 3697185 3697212 -140585277 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 344 340 19 31 chr12 3697901 3698063 -140584426 - L1MC4a LINE L1 -1879 5929 5770 1427 130 14 0 chr12 3698075 3698290 -140584199 - L1PA15 LINE L1 0 6165 5948 261 0 0 0 chr12 3698339 3698368 -140584121 + (TA)n Simple_repeat Simple_repeat 1 29 0 406 282 84 35 chr12 3698422 3698624 -140583865 + MIR SINE MIR 34 245 -17 277 294 101 25 chr12 3700668 3700787 -140581702 + MIR SINE MIR 17 144 -64 2155 86 0 14 chr12 3700895 3701175 -140581314 + AluSc SINE Alu 1 276 -33 275 0 29 0 chr12 3701175 3701210 -140581279 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 982 257 92 14 chr12 3701260 3701618 -140580871 + Charlie7 DNA MER1_type 180 565 -2047 465 212 83 86 chr12 3701703 3702028 -140580461 + Charlie7 DNA MER1_type 2192 2515 -97 184 241 35 35 chr12 3702156 3702214 -140580275 + L2 LINE L2 2934 2991 -322 205 208 21 0 chr12 3702254 3702302 -140580187 + L2 LINE L2 3201 3249 -23 525 307 81 61 chr12 3702502 3703070 -140579419 + L1M4 LINE L1 2699 3263 -2883 2295 102 0 0 chr12 3703388 3703673 -140578816 - AluSg SINE Alu -25 285 1 1114 297 70 50 chr12 3704010 3704735 -140577754 + L2 LINE L2 2333 3064 -249 276 111 44 0 chr12 3706166 3706211 -140576278 + MIR SINE MIR 183 229 -33 474 226 34 85 chr12 3708117 3708294 -140574195 + L2 LINE L2 2885 3052 -220 1881 143 0 40 chr12 3708719 3709019 -140573470 - AluJo SINE Alu -22 290 3 713 121 258 0 chr12 3709021 3709211 -140573278 - Charlie1a DNA MER1_type -30 1425 1187 698 173 93 0 chr12 3709216 3709366 -140573123 - MER20 DNA MER1_type -6 213 50 6724 76 20 0 chr12 3709418 3710708 -140571781 - L1PA10 LINE L1 0 6168 4890 4674 189 75 6 chr12 3710710 3711750 -140570739 - Charlie1a DNA MER1_type -1591 1170 51 198 0 0 0 chr12 3711750 3711772 -140570717 + (C)n Simple_repeat Simple_repeat 1 22 0 4674 189 75 6 chr12 3711772 3711813 -140570676 - Charlie1a DNA MER1_type -2710 51 14 756 238 28 6 chr12 3711929 3712110 -140570379 - MIR3 SINE MIR -1 207 23 1348 112 5 0 chr12 3712837 3713033 -140569456 + L1PA13 LINE L1 5951 6147 -16 285 29 0 0 chr12 3713033 3713067 -140569422 + (CA)n Simple_repeat Simple_repeat 2 35 0 3028 169 37 2 chr12 3715353 3715914 -140566575 + LTR26 LTR ERV1 1 581 -22 412 127 0 0 chr12 3715920 3715983 -140566506 + LTR26 LTR ERV1 541 603 0 202 271 57 43 chr12 3716495 3716565 -140565924 - MIR SINE MIR -98 164 94 519 306 42 14 chr12 3716634 3716850 -140565639 + MIR SINE MIR 20 241 -21 234 0 0 0 chr12 3717781 3717807 -140564682 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1888 157 10 7 chr12 3718025 3718325 -140564164 - AluJo SINE Alu -11 301 1 2330 90 30 0 chr12 3718554 3718853 -140563636 - AluSc SINE Alu -1 308 1 313 273 91 0 chr12 3720813 3720901 -140561588 - MIR3 SINE MIR -28 180 85 545 238 67 47 chr12 3721309 3721502 -140560987 - MIR SINE MIR -58 204 8 273 238 36 12 chr12 3722449 3722533 -140559956 - LTR23 LTR ERV1 0 437 352 2311 113 21 0 chr12 3722618 3722954 -140559535 - L1PA13 LINE L1 -10 6153 5811 726 98 0 0 chr12 3722955 3723057 -140559432 + L1PA13 LINE L1 5690 5791 -370 1383 177 90 3 chr12 3723059 3723359 -140559130 - LTR56 LTR ERV1 -111 334 9 365 107 165 29 chr12 3723854 3723946 -140558543 - MIR SINE MIR -62 146 58 209 252 233 48 chr12 3724179 3724282 -140558207 + MIR SINE MIR 2 123 -139 809 183 26 26 chr12 3724323 3724476 -140558013 - FRAM SINE Alu -25 151 1 247 225 225 0 chr12 3725254 3725343 -140557146 - L2 LINE L2 0 3313 3205 993 157 141 0 chr12 3725380 3725565 -140556924 + MER101B LTR ERV1 234 444 -126 2028 80 36 25 chr12 3725573 3725847 -140556642 + AluSp SINE Alu 15 291 -22 380 152 42 0 chr12 3725847 3726012 -140556477 + (TA)n Simple_repeat Simple_repeat 1 172 0 33 25 0 0 chr12 3726012 3726052 -140556437 + AT_rich Low_complexity Low_complexity 1 40 0 713 145 23 8 chr12 3726052 3726183 -140556306 + MER101 LTR ERV1 338 470 -4 253 305 29 19 chr12 3726274 3726379 -140556110 - L2 LINE L2 -494 2820 2715 450 305 11 9 chr12 3726845 3726995 -140555494 + MIR3 SINE MIR 47 192 -45 382 298 61 0 chr12 3727116 3727233 -140555256 + MIR SINE MIR 43 168 -40 2601 54 0 10 chr12 3727672 3727985 -140554504 + AluY SINE Alu 1 310 -1 1931 244 84 16 chr12 3728725 3729298 -140553191 - MER90 LTR ERV1 0 614 3 1356 204 87 9 chr12 3730118 3730451 -140552038 + L1MB7 LINE L1 5826 6184 0 213 121 0 0 chr12 3733075 3733108 -140549381 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 610 276 86 17 chr12 3733149 3733381 -140549108 + MIR SINE MIR 13 260 -2 651 343 55 75 chr12 3733675 3734907 -140547582 + L2 LINE L2 1603 2809 -505 411 294 79 1 chr12 3734940 3735087 -140547402 + MIR SINE MIR 35 190 -61 432 326 81 52 chr12 3735176 3735618 -140546871 + L2 LINE L2 2817 3271 -1 219 386 95 21 chr12 3736849 3737038 -140545451 + L3b LINE CR1 1289 1491 -92 281 306 120 28 chr12 3737986 3738094 -140544395 - L2 LINE L2 -1 3271 3154 653 82 10 0 chr12 3738958 3739055 -140543434 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 260 289 87 0 chr12 3741126 3741230 -140541259 - MIR3 SINE MIR -9 199 87 310 250 43 11 chr12 3741290 3741382 -140541107 - MIR3 SINE MIR -108 100 6 426 253 31 62 chr12 3743544 3743706 -140538783 - MIR SINE MIR -82 180 24 457 287 18 17 chr12 3743713 3743920 -140538569 + MIR SINE MIR 36 241 -21 486 268 22 29 chr12 3745045 3745183 -140537306 - MIR3 SINE MIR -67 141 5 328 255 131 48 chr12 3745257 3745402 -140537087 - MIR SINE MIR -27 235 79 395 294 40 56 chr12 3746201 3746563 -140535926 + L1MC4a LINE L1 5696 6035 -86 24 0 0 0 chr12 3746993 3747017 -140535472 + AT_rich Low_complexity Low_complexity 1 24 0 256 368 97 26 chr12 3748210 3748365 -140534124 - L3 LINE CR1 0 1577 1412 700 205 112 6 chr12 3748568 3748729 -140533760 + MER5B DNA MER1_type 1 178 0 546 275 192 0 chr12 3748768 3748950 -140533539 + MIR SINE MIR 31 247 -15 220 254 55 0 chr12 3749016 3749071 -140533418 - MIR SINE MIR -10 252 195 187 330 0 23 chr12 3749319 3749407 -140533082 + L2 LINE L2 3227 3312 -1 185 214 0 48 chr12 3749497 3749539 -140532950 - L2 LINE L2 -15 3298 3259 331 279 95 27 chr12 3749557 3749704 -140532785 - MLT1G1 LTR MaLR 0 595 439 388 299 76 11 chr12 3750065 3750249 -140532240 + MIR3 SINE MIR 4 199 -9 396 59 0 0 chr12 3750524 3750575 -140531914 + (CA)n Simple_repeat Simple_repeat 1 51 0 405 0 0 0 chr12 3751392 3751437 -140531052 + (GA)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr12 3751793 3751822 -140530667 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 3752010 3752031 -140530458 + GC_rich Low_complexity Low_complexity 1 21 0 513 0 0 0 chr12 3752549 3752606 -140529883 + (TG)n Simple_repeat Simple_repeat 2 58 0 209 333 81 18 chr12 3754876 3754987 -140527502 - L2 LINE L2 -8 3264 3147 414 206 56 86 chr12 3755036 3755205 -140527284 - MIR SINE MIR -63 145 37 296 288 144 0 chr12 3755510 3755663 -140526826 + MIR SINE MIR 82 256 -6 400 298 0 15 chr12 3756122 3756253 -140526236 + L2 LINE L2 2932 3060 -212 234 0 0 0 chr12 3756931 3756957 -140525532 + (T)n Simple_repeat Simple_repeat 1 26 0 518 230 241 16 chr12 3757263 3757454 -140525035 + MIR SINE MIR 29 262 0 21 0 0 0 chr12 3757629 3757650 -140524839 + AT_rich Low_complexity Low_complexity 1 21 0 328 325 165 34 chr12 3757986 3758223 -140524266 - L3b LINE CR1 -26 1557 1290 198 302 38 0 chr12 3758545 3758598 -140523891 - MIR3 SINE MIR -3 205 151 442 324 7 14 chr12 3758885 3759027 -140523462 - MIR SINE MIR -114 148 8 1826 192 45 11 chr12 3759501 3759876 -140522613 - MLT1C LTR MaLR 0 467 80 28 0 0 0 chr12 3759876 3759904 -140522585 + AT_rich Low_complexity Low_complexity 1 28 0 44128 29 21 1 chr12 3759912 3765945 -140516544 - L1HS LINE L1 0 6155 1 480 157 22 11 chr12 3765949 3766038 -140516451 - MLT1C LTR MaLR -375 92 3 493 384 20 0 chr12 3766226 3766424 -140516065 - MIR SINE MIR -3 259 58 565 262 94 53 chr12 3766779 3767023 -140515466 + MIR SINE MIR 9 262 0 2471 56 0 0 chr12 3767831 3768137 -140514352 - AluY SINE Alu -5 306 1 1264 125 0 0 chr12 3768463 3768655 -140513834 - AluSg/x SINE Alu 0 312 121 466 329 140 40 chr12 3769370 3770314 -140512175 + L2 LINE L2 2156 3267 -5 1372 139 0 17 chr12 3771035 3771272 -140511217 + L1MA5A LINE L1 6061 6293 -4 372 324 205 42 chr12 3772790 3773386 -140509103 + L2 LINE L2 1881 2573 -741 180 111 0 0 chr12 3773495 3773522 -140508967 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 213 298 0 0 chr12 3773675 3773732 -140508757 + MIR SINE MIR 34 90 -118 577 272 31 0 chr12 3775686 3775848 -140506641 - MIR SINE MIR -12 250 84 683 132 88 137 chr12 3776036 3776099 -140506390 + MER5A DNA MER1_type 15 80 -109 1198 35 0 0 chr12 3776099 3776242 -140506247 + L1PA4 LINE L1 6010 6152 -3 683 132 88 137 chr12 3776242 3776360 -140506129 + MER5A DNA MER1_type 80 187 -2 190 285 130 41 chr12 3776253 3776376 -140506113 - MER5A DNA MER1_type -51 138 5 * 282 116 0 0 chr12 3777032 3777075 -140505414 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 751 305 56 13 chr12 3777075 3777380 -140505109 - L2 LINE L2 0 3313 2996 191 88 29 0 chr12 3777727 3777761 -140504728 + (CAA)n Simple_repeat Simple_repeat 2 36 0 256 202 144 29 chr12 3778186 3778290 -140504199 + BaEV-int LTR ERV1 187 302 -6347 551 363 3 7 chr12 3778471 3778760 -140503729 + BaEV-int LTR ERV1 719 1006 -6779 703 318 65 58 chr12 3778939 3779704 -140502785 + BaEV-int LTR ERV1 1264 2034 -5751 462 159 0 0 chr12 3779705 3779774 -140502715 + LTR18B LTR ERVL 334 402 -212 458 101 0 25 chr12 3779827 3779906 -140502583 + LTR18B LTR ERVL 268 344 -270 258 344 6 25 chr12 3779923 3780080 -140502409 + GA-rich Low_complexity Low_complexity 2 155 0 566 250 133 27 chr12 3780445 3780701 -140501788 - MER102b DNA MER1_type -3 338 56 1650 324 25 45 chr12 3781248 3782008 -140500481 + BaEV-int LTR ERV1 3104 3877 -3908 2295 92 0 0 chr12 3782008 3782311 -140500178 + AluSq SINE Alu 1 303 -10 1650 324 25 45 chr12 3782311 3783100 -140499389 + BaEV-int LTR ERV1 3877 4680 -3105 2060 83 49 0 chr12 3783100 3783388 -140499101 + AluSg1 SINE Alu 1 302 -7 1650 324 25 45 chr12 3783388 3783489 -140499000 + BaEV-int LTR ERV1 4680 5759 -2026 233 29 29 0 chr12 3783495 3783529 -140498960 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 250 326 132 19 chr12 3783787 3784112 -140498377 + BaEV-int LTR ERV1 5923 6284 -1501 421 291 60 86 chr12 3784207 3784825 -140497664 + BaEV-int LTR ERV1 5285 5886 -763 213 227 27 40 chr12 3784931 3785006 -140497483 + A-rich Low_complexity Low_complexity 5 78 0 180 0 0 0 chr12 3785359 3785379 -140497110 + (A)n Simple_repeat Simple_repeat 1 20 0 1932 139 3 0 chr12 3785657 3785952 -140496537 + AluSx SINE Alu 1 296 -16 4018 195 51 33 chr12 3786566 3787913 -140494576 - L1MB3 LINE L1 -1 6251 1993 503 219 10 0 chr12 3787914 3788010 -140494479 - Tigger7 DNA MER2_type -1 2486 2390 * 1501 201 4 26 chr12 3788008 3788281 -140494208 - Tigger7 DNA MER2_type -2220 267 1 4826 259 69 30 chr12 3788281 3790099 -140492390 - L1MEc LINE L1 -4407 1989 100 242 296 62 0 chr12 3792708 3792789 -140489700 - MER5A DNA MER1_type -31 158 73 204 118 39 20 chr12 3792961 3793012 -140489477 + (TATAA)n Simple_repeat Simple_repeat 5 56 0 261 202 53 53 chr12 3793020 3793067 -140489422 - MER103 DNA DNA -71 95 49 2245 65 0 7 chr12 3793067 3793358 -140489131 + AluSx SINE Alu 24 312 0 261 202 53 53 chr12 3793358 3793404 -140489085 - MER103 DNA DNA -116 50 2 665 174 193 19 chr12 3793461 3793622 -140488867 - MER5A DNA MER1_type 0 189 1 1277 97 121 5 chr12 3794065 3794271 -140488218 - MER30 DNA MER1_type 0 230 1 253 284 0 84 chr12 3795204 3795299 -140487190 + MIR SINE MIR 52 138 -70 181 222 0 0 chr12 3795467 3795512 -140486977 + L2 LINE L2 3217 3261 -11 492 276 142 39 chr12 3795530 3795762 -140486727 + MIR SINE MIR 6 261 -1 620 307 56 70 chr12 3797516 3798220 -140484269 - L1ME4a LINE L1 -248 5873 5174 626 348 41 41 chr12 3798239 3798707 -140483782 + L2 LINE L2 2291 2758 -556 877 267 71 8 chr12 3799883 3800123 -140482366 - MIR SINE MIR -2 260 6 990 250 76 0 chr12 3800741 3800965 -140481524 - MIR SINE MIR -21 241 1 367 299 132 20 chr12 3800965 3801137 -140481352 - MIR SINE MIR -57 205 18 397 268 114 8 chr12 3802184 3802307 -140480182 - MIR SINE MIR -3 259 124 437 261 17 9 chr12 3802484 3802599 -140479890 - MIR SINE MIR -18 244 129 203 274 219 0 chr12 3802673 3802746 -140479743 - MIR SINE MIR -170 92 4 318 277 92 8 chr12 3803838 3803957 -140478532 - L3b LINE CR1 -176 1407 1279 3462 85 9 9 chr12 3805157 3805617 -140476872 - LTR46 LTR ERV1 0 460 1 630 248 63 71 chr12 3805785 3806023 -140476466 - MIR SINE MIR -26 236 1 230 260 0 0 chr12 3806031 3806081 -140476408 - L2 LINE L2 -21 3251 3202 520 272 15 0 chr12 3806259 3806395 -140476094 - MLT2F LTR ERVL -522 141 4 6266 229 87 62 chr12 3806407 3808212 -140474277 + L1ME2 LINE L1 2466 4225 -1959 840 175 0 14 chr12 3808212 3808355 -140474134 + AluJb SINE Alu 1 141 -171 6266 229 87 62 chr12 3808355 3810017 -140472472 + L1ME2 LINE L1 4225 6184 0 21 0 0 0 chr12 3810214 3810235 -140472254 + AT_rich Low_complexity Low_complexity 1 21 0 220 272 25 49 chr12 3810297 3810378 -140472111 - L3b LINE CR1 -188 1395 1317 880 228 28 26 chr12 3811101 3811328 -140471161 + MIR SINE MIR 18 242 -20 189 147 0 0 chr12 3812507 3812541 -140469948 + (GA)n Simple_repeat Simple_repeat 1 34 0 269 267 23 0 chr12 3812557 3812643 -140469846 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 * 302 274 5 59 chr12 3812599 3812706 -140469783 + GA-rich Low_complexity Low_complexity 1 95 -81 1971 101 4 0 chr12 3812706 3812963 -140469526 + AluSx SINE Alu 45 302 -10 302 274 5 59 chr12 3812963 3813041 -140469448 + GA-rich Low_complexity Low_complexity 95 176 0 201 174 101 43 chr12 3813144 3813213 -140469276 - MIR SINE MIR -177 85 13 310 321 9 9 chr12 3814199 3814305 -140468184 + MIR SINE MIR 37 142 -66 228 67 0 0 chr12 3814742 3814772 -140467717 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1543 272 102 105 chr12 3815800 3818122 -140464367 - L2 LINE L2 -40 3273 967 221 202 34 0 chr12 3818388 3818459 -140464030 - MIR SINE MIR -62 146 99 186 189 0 0 chr12 3818942 3818979 -140463510 + CT-rich Low_complexity Low_complexity 1 37 0 2144 257 99 11 chr12 3819045 3819656 -140462833 - L1MC4 LINE L1 -143 7899 7343 621 91 0 27 chr12 3819656 3819766 -140462723 + (TCTA)n Simple_repeat Simple_repeat 3 109 0 228 35 0 0 chr12 3819765 3819794 -140462695 + (CAGC)n Simple_repeat Simple_repeat 4 32 0 * 2144 257 99 11 chr12 3819766 3820383 -140462106 - L1MC4 LINE L1 -699 7343 6448 330 357 60 0 chr12 3821498 3821680 -140460809 + MIR SINE MIR 65 257 -5 279 300 69 64 chr12 3821962 3822195 -140460294 - L3 LINE CR1 -562 1015 782 241 277 161 65 chr12 3822292 3822447 -140460042 - L3 LINE CR1 -987 590 421 487 279 87 6 chr12 3822453 3822625 -140459864 + MIR SINE MIR 23 208 -54 547 189 47 0 chr12 3822708 3822814 -140459675 - MER63 DNA MER1_type -325 737 1 271 381 19 19 chr12 3822871 3823026 -140459463 - L3 LINE CR1 -1158 419 265 455 291 58 54 chr12 3823044 3823267 -140459222 - L2 LINE L2 0 3313 3090 730 215 11 45 chr12 3823290 3823467 -140459022 - MER63A DNA MER1_type 0 210 40 195 333 61 0 chr12 3824456 3824555 -140457934 + MIR SINE MIR 102 206 -56 255 244 11 67 chr12 3825836 3825926 -140456563 + L2 LINE L2 3174 3258 -14 238 269 75 0 chr12 3826083 3826150 -140456339 + MER91A DNA MER1_type 14 85 -111 223 109 55 18 chr12 3826382 3826437 -140456052 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 528 322 79 9 chr12 3827873 3828100 -140454389 - MIR SINE MIR -1 261 19 234 195 0 0 chr12 3828306 3828347 -140454142 + MIR SINE MIR 99 139 -123 2048 156 83 22 chr12 3828356 3828508 -140453981 - Tigger2 DNA MER2_type 0 2718 2577 2464 71 7 0 chr12 3828508 3828805 -140453684 + AluSq SINE Alu 1 299 -14 2048 156 83 22 chr12 3828805 3829062 -140453427 - Tigger2 DNA MER2_type -141 2577 2284 318 180 16 0 chr12 3829069 3829130 -140453359 - Tigger2 DNA MER2_type -2656 62 1 379 263 11 0 chr12 3829130 3829225 -140453264 + MIR SINE MIR 150 245 -17 543 259 129 24 chr12 3831667 3831837 -140450652 + MIR SINE MIR 47 234 -28 368 173 25 0 chr12 3832735 3832816 -140449673 + CT-rich Low_complexity Low_complexity 2 84 0 207 0 0 0 chr12 3832958 3832981 -140449508 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1216 257 65 24 chr12 3833607 3834443 -140448046 - L1MCc LINE L1 -4889 1534 1138 266 269 0 30 chr12 3834860 3834927 -140447562 - L2 LINE L2 -8 3264 3200 416 273 16 16 chr12 3835047 3835168 -140447321 - MER5A DNA MER1_type -26 163 43 249 293 114 8 chr12 3835065 3835188 -140447301 + MER5A DNA MER1_type 54 189 0 * 202 352 0 14 chr12 3835207 3835278 -140447211 - MIR SINE MIR -87 121 52 822 226 86 53 chr12 3835282 3835525 -140446964 - MIR SINE MIR 0 262 12 279 262 81 114 chr12 3836259 3836408 -140446081 + MIR SINE MIR 48 191 -71 2024 120 42 0 chr12 3836453 3836737 -140445752 + AluSx SINE Alu 1 296 -16 343 284 74 0 chr12 3836979 3837074 -140445415 - MIR SINE MIR -127 135 34 345 312 19 18 chr12 3837240 3837375 -140445114 + MIR SINE MIR 10 145 -63 203 336 55 36 chr12 3838274 3838286 -140444203 - L3b LINE CR1 -233 1350 1340 1421 114 59 9 chr12 3838286 3838505 -140443984 - MER30 DNA MER1_type 0 230 1 203 336 55 36 chr12 3838505 3838602 -140443887 - L3b LINE CR1 -243 1340 1239 237 235 12 37 chr12 3838675 3838756 -140443733 - L1ME4a LINE L1 -105 6016 5938 604 128 0 0 chr12 3838839 3838917 -140443572 - AluJb SINE Alu -22 290 213 1663 164 24 24 chr12 3838947 3839239 -140443250 - AluJo SINE Alu -20 292 1 189 353 29 36 chr12 3839605 3839744 -140442745 - L3 LINE CR1 -75 1502 1365 318 50 0 0 chr12 3841044 3841084 -140441405 + (TG)n Simple_repeat Simple_repeat 2 41 0 532 312 169 61 chr12 3841910 3842301 -140440188 + L3 LINE CR1 1127 1559 -18 186 398 17 0 chr12 3842814 3842932 -140439557 - L3b LINE CR1 -185 1398 1279 418 227 273 0 chr12 3843263 3843391 -140439098 - MER5A DNA MER1_type -21 168 6 1535 156 126 58 chr12 3844755 3845120 -140437369 - MLT1B LTR MaLR 0 390 1 447 283 58 74 chr12 3845325 3845459 -140437030 - L1MC4a LINE L1 -1739 6069 5934 562 213 24 0 chr12 3845459 3845586 -140436903 - L1MD2 LINE L1 -15 6344 6215 447 283 58 74 chr12 3845586 3845762 -140436727 - L1MC4a LINE L1 -1874 5934 5764 1612 115 0 37 chr12 3846063 3846306 -140436183 - AluJo SINE Alu 0 312 79 1170 160 0 0 chr12 3847253 3847441 -140435048 + MER5A DNA MER1_type 2 189 0 315 288 25 76 chr12 3847816 3848014 -140434475 - L1MCa LINE L1 -4308 2118 1931 36 100 0 0 chr12 3848014 3848134 -140434355 + AT_rich Low_complexity Low_complexity 1 120 0 209 305 66 66 chr12 3849212 3849379 -140433110 + L2 LINE L2 3106 3272 0 502 271 0 0 chr12 3849866 3849999 -140432490 + MER94 DNA DNA 1 133 -1 232 297 44 0 chr12 3850011 3850102 -140432387 - MIR SINE MIR -55 207 113 207 302 105 0 chr12 3850095 3850181 -140432308 - MIR3 SINE MIR -111 97 3 * 195 447 0 0 chr12 3850251 3850354 -140432135 + MER5B DNA MER1_type 70 172 -6 203 352 33 22 chr12 3850560 3850651 -140431838 + L3b LINE CR1 1405 1496 -87 394 301 160 14 chr12 3851119 3851338 -140431151 - L3 LINE CR1 -114 1463 1213 303 309 70 91 chr12 3851541 3851771 -140430718 - L2 LINE L2 -18 3254 3030 1502 160 91 29 chr12 3852124 3852399 -140430090 - AluJo SINE Alu -9 303 12 190 313 71 18 chr12 3853588 3853700 -140428789 + L3b LINE CR1 1340 1457 -126 180 111 0 0 chr12 3854444 3854471 -140428018 + (TG)n Simple_repeat Simple_repeat 1 27 0 350 293 86 9 chr12 3858046 3858162 -140424327 + MIR SINE MIR 25 149 -113 436 327 116 33 chr12 3859507 3860033 -140422456 - L2 LINE L2 -1 3271 2709 393 270 38 44 chr12 3860721 3860880 -140421609 + MIR SINE MIR 34 191 -71 639 252 24 16 chr12 3861314 3861505 -140420984 + MIR SINE MIR 5 192 -51 458 311 34 28 chr12 3861663 3861840 -140420649 + L2 LINE L2 3095 3272 0 258 300 18 36 chr12 3861908 3862018 -140420471 + MIR3 SINE MIR 101 208 0 1826 147 33 52 chr12 3863753 3864121 -140418368 - MER46B DNA MER2_type 0 236 1 279 0 0 0 chr12 3864360 3864391 -140418098 + (TG)n Simple_repeat Simple_repeat 2 32 0 823 201 74 0 chr12 3864832 3864981 -140417508 - FRAM SINE Alu -24 152 1 217 200 0 0 chr12 3865011 3865056 -140417433 - MER5B DNA MER1_type -129 49 5 202 300 11 33 chr12 3865503 3865593 -140416896 + MIR SINE MIR 62 149 -59 257 313 0 0 chr12 3865902 3865966 -140416523 + G-rich Low_complexity Low_complexity 2 65 0 211 269 0 30 chr12 3866229 3866296 -140416193 + GA-rich Low_complexity Low_complexity 3 67 0 324 340 61 0 chr12 3866510 3866657 -140415832 - L3 LINE CR1 -135 1442 1287 809 104 0 14 chr12 3867362 3867506 -140414983 - L1MB4 LINE L1 0 6180 6039 245 267 102 51 chr12 3867916 3868092 -140414397 - MIR SINE MIR -2 260 76 213 250 211 0 chr12 3868558 3868634 -140413855 - L2 LINE L2 -33 3239 3148 3029 248 39 32 chr12 3870101 3871657 -140410832 + L1M4c LINE L1 916 2595 -3787 2393 86 0 7 chr12 3871657 3871959 -140410530 + AluSq SINE Alu 6 305 -8 3029 248 39 32 chr12 3871959 3872100 -140410389 + L1M4c LINE L1 2595 2733 -3649 447 293 75 28 chr12 3873064 3873276 -140409213 - MIR SINE MIR 0 262 41 1478 186 78 0 chr12 3873402 3873564 -140408925 - AluJo SINE Alu -22 290 97 468 0 0 0 chr12 3873564 3873616 -140408873 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 1478 186 78 0 chr12 3873616 3873722 -140408767 - AluJo SINE Alu -215 97 1 317 125 18 0 chr12 3874096 3874152 -140408337 + (CA)n Simple_repeat Simple_repeat 2 58 0 228 292 73 21 chr12 3874327 3874423 -140408066 - MIR3 SINE MIR -27 181 81 204 240 0 0 chr12 3875013 3875063 -140407426 + A-rich Low_complexity Low_complexity 2 51 0 309 348 44 40 chr12 3876380 3876607 -140405882 + L2 LINE L2 3028 3255 -17 189 229 167 111 chr12 3876721 3876865 -140405624 - MIR SINE MIR -46 216 65 192 288 17 17 chr12 3876974 3877033 -140405456 + L2 LINE L2 3255 3313 0 212 303 50 40 chr12 3878098 3878197 -140404292 - MIR SINE MIR -99 163 64 180 111 0 0 chr12 3878887 3878914 -140403575 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 1214 226 55 0 chr12 3878921 3879213 -140403276 - MER46C DNA MER2_type -23 315 8 254 270 79 11 chr12 3879573 3879662 -140402827 + L3 LINE CR1 1370 1464 -113 2093 103 0 0 chr12 3882125 3882397 -140400092 + AluSg1 SINE Alu 38 309 0 216 309 25 0 chr12 3883029 3883110 -140399379 + MIR SINE MIR 40 122 -86 195 129 0 0 chr12 3883341 3883372 -140399117 + (TG)n Simple_repeat Simple_repeat 2 32 0 388 324 7 21 chr12 3883871 3884016 -140398473 + MIR3 SINE MIR 45 187 -21 438 224 7 92 chr12 3884878 3885030 -140397459 - L3b LINE CR1 -235 1348 1210 542 261 147 0 chr12 3885439 3885596 -140396893 + MER5A DNA MER1_type 9 188 -1 212 178 22 0 chr12 3885720 3885765 -140396724 - MER5B DNA MER1_type -126 52 7 209 379 0 0 chr12 3887100 3887166 -140395323 - L2 LINE L2 -86 3186 3121 429 179 0 13 chr12 3887230 3887308 -140395181 + L2 LINE L2 3194 3270 -43 325 236 0 0 chr12 3887919 3887991 -140394498 + L2 LINE L2 3162 3233 -39 467 287 14 14 chr12 3888557 3888700 -140393789 + MIR3 SINE MIR 3 145 -63 917 131 12 0 chr12 3888716 3888970 -140393519 + CT-rich Low_complexity Low_complexity 1 257 0 264 149 0 0 chr12 3889050 3889097 -140393392 + (GGA)n Simple_repeat Simple_repeat 1 47 0 271 254 0 0 chr12 3889845 3889900 -140392589 + (CA)n Simple_repeat Simple_repeat 1 55 0 308 176 34 126 chr12 3890705 3890824 -140391665 + MIR SINE MIR 33 140 -68 395 328 18 41 chr12 3892634 3892672 -140389817 - MIR3 SINE MIR -8 200 163 2614 102 72 5 chr12 3892672 3893073 -140389416 + MSTA LTR MaLR 1 428 0 395 328 18 41 chr12 3893073 3893205 -140389284 - MIR3 SINE MIR -45 163 34 296 248 36 13 chr12 3893358 3893474 -140389015 + MIR SINE MIR 72 190 -71 1767 155 7 4 chr12 3896221 3896498 -140385991 - AluJo SINE Alu -10 302 25 955 216 118 0 chr12 3896631 3896988 -140385501 - L1ME4a LINE L1 -197 5924 5526 251 294 12 35 chr12 3897192 3897277 -140385212 + MIR SINE MIR 108 190 -72 183 286 29 29 chr12 3898025 3898095 -140384394 + L2 LINE L2 3199 3268 -4 3402 86 55 6 chr12 3898135 3898623 -140383866 + LTR10D LTR ERV1 2 513 0 339 301 72 57 chr12 3899333 3899383 -140383106 - L2 LINE L2 -2 3311 3263 186 103 0 0 chr12 3899383 3899412 -140383077 + (ATG)n Simple_repeat Simple_repeat 3 31 0 339 301 72 57 chr12 3899412 3899570 -140382919 - L2 LINE L2 -50 3263 3100 270 321 16 0 chr12 3899617 3899713 -140382776 + MIR SINE MIR 40 121 -87 192 179 0 0 chr12 3900174 3900213 -140382276 + (CA)n Simple_repeat Simple_repeat 2 40 0 512 286 19 26 chr12 3900963 3901117 -140381372 + L2 LINE L2 3155 3307 -6 267 368 9 9 chr12 3901135 3901241 -140381248 + L2 LINE L2 3208 3313 0 2384 96 0 0 chr12 3901780 3902081 -140380408 + AluSg SINE Alu 1 301 -9 1786 186 7 0 chr12 3902946 3903231 -140379258 - AluJo SINE Alu -25 287 1 306 104 0 42 chr12 3904421 3904469 -140378020 - L1MC4 LINE L1 -1339 6703 6658 775 53 59 6 chr12 3904481 3904650 -140377839 + (TA)n Simple_repeat Simple_repeat 1 178 0 180 339 18 0 chr12 3904710 3904766 -140377723 + L3 LINE CR1 1517 1573 -4 188 132 0 26 chr12 3904766 3904804 -140377685 + (TA)n Simple_repeat Simple_repeat 1 37 0 189 74 0 0 chr12 3905710 3905737 -140376752 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 770 259 154 54 chr12 3905739 3906333 -140376156 - L2 LINE L2 0 3313 2647 1194 241 89 51 chr12 3906337 3906785 -140375704 - L2 LINE L2 -1376 1938 1474 198 316 18 0 chr12 3906972 3907029 -140375460 + L3 LINE CR1 1517 1574 -3 216 280 0 0 chr12 3907117 3907167 -140375322 - MIR SINE MIR -12 250 201 459 264 208 6 chr12 3907619 3907778 -140374711 - MIR SINE MIR -57 205 15 220 365 44 25 chr12 3908768 3908927 -140373562 + MIR SINE MIR 37 198 -64 2155 24 8 0 chr12 3909701 3909985 -140372504 + L1PA4 LINE L1 5895 6180 0 294 271 104 21 chr12 3910390 3910486 -140372003 + L2 LINE L2 3168 3271 -1 358 172 0 23 chr12 3910517 3910604 -140371885 + GA-rich Low_complexity Low_complexity 3 87 0 229 263 18 0 chr12 3911711 3911768 -140370721 + L3 LINE CR1 1519 1576 -1 283 289 55 31 chr12 3911888 3912016 -140370473 + L1MC4a LINE L1 5844 5974 -1834 637 241 60 18 chr12 3912453 3912619 -140369870 + MIR3 SINE MIR 21 193 -15 188 184 20 0 chr12 3913494 3913543 -140368946 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 270 235 66 175 chr12 3913627 3913703 -140368786 + MIR SINE MIR 88 134 -128 2417 82 0 7 chr12 3913703 3913997 -140368492 - AluSg SINE Alu -18 292 1 270 235 66 175 chr12 3913997 3914103 -140368386 + MIR SINE MIR 134 250 -12 269 315 46 0 chr12 3914770 3914878 -140367611 - MIR3 SINE MIR -7 201 89 362 331 66 22 chr12 3915429 3915610 -140366879 - L3b LINE CR1 -210 1373 1185 209 309 0 60 chr12 3917468 3917552 -140364937 + MIR3 SINE MIR 117 195 -13 215 340 117 10 chr12 3918577 3918680 -140363809 - MIR SINE MIR -142 120 7 294 95 0 0 chr12 3919925 3919967 -140362522 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 737 216 22 74 chr12 3919968 3920199 -140362290 - L2 LINE L2 -12 3301 3083 531 0 0 0 chr12 3921546 3921605 -140360884 + (CA)n Simple_repeat Simple_repeat 2 60 0 200 242 210 64 chr12 3923063 3923253 -140359236 + MIR SINE MIR 42 262 0 1435 307 134 46 chr12 3923985 3924807 -140357682 - L3 LINE CR1 -4 1573 680 374 337 132 36 chr12 3924891 3925277 -140357212 - L1 LINE L1 -3321 2825 2403 195 286 238 32 chr12 3925280 3925406 -140357083 - L3 LINE CR1 -891 686 535 2151 136 0 0 chr12 3925441 3925736 -140356753 + AluSx SINE Alu 1 295 -17 612 299 70 14 chr12 3926071 3926285 -140356204 + MIR SINE MIR 32 257 -5 195 259 24 82 chr12 3926252 3926337 -140356152 - MER5A DNA MER1_type -109 80 1 * 291 114 0 0 chr12 3927044 3927088 -140355401 + (TG)n Simple_repeat Simple_repeat 1 44 0 199 333 88 39 chr12 3927504 3927606 -140354883 - L3b LINE CR1 0 1583 1477 265 252 222 30 chr12 3927842 3927977 -140354512 - MIR3 SINE MIR -10 198 38 405 321 33 22 chr12 3929027 3929211 -140353278 + MER5A DNA MER1_type 1 186 -3 208 278 28 14 chr12 3929867 3929939 -140352550 + MER5B DNA MER1_type 48 120 -58 512 269 33 33 chr12 3931341 3931523 -140350966 - MIR3 SINE MIR -23 185 4 407 280 15 45 chr12 3932074 3932206 -140350283 - MIR3 SINE MIR -50 158 31 412 231 60 0 chr12 3932236 3932351 -140350138 - MER5A DNA MER1_type -63 126 4 924 219 64 27 chr12 3932481 3932700 -140349789 - MIR SINE MIR 0 262 36 563 312 0 87 chr12 3933757 3933975 -140348514 + MIR SINE MIR 35 233 -29 667 324 70 4 chr12 3934428 3934672 -140347817 - MIR SINE MIR -1 261 2 837 169 0 7 chr12 3936070 3936212 -140346277 + MLT1A1 LTR MaLR 1 141 -224 310 220 3 19 chr12 3936333 3936436 -140346053 + LTR16C LTR ERVL 301 438 -52 246 62 0 0 chr12 3936816 3936848 -140345641 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 1869 213 5 11 chr12 3937129 3937496 -140344993 + MLT1A1 LTR MaLR 1 365 0 400 225 217 8 chr12 3938009 3938129 -140344360 - L3b LINE CR1 -228 1355 1211 628 212 75 126 chr12 3941244 3941499 -140340990 - MIR SINE MIR -4 258 17 242 256 78 22 chr12 3941542 3941632 -140340857 + MIR SINE MIR 152 246 -16 248 372 49 26 chr12 3943078 3943304 -140339185 - L3b LINE CR1 -134 1449 1219 2090 121 23 16 chr12 3943495 3943802 -140338687 - AluSg SINE Alu -1 309 1 328 325 122 18 chr12 3944236 3944522 -140337967 + L2 LINE L2 2998 3313 0 678 188 5 130 chr12 3945100 3945292 -140337197 - MER20 DNA MER1_type -4 215 48 2498 142 189 26 chr12 3945292 3945820 -140336669 + LTR18B LTR ERVL 1 614 0 3585 150 18 8 chr12 3946003 3946631 -140335858 + L1MB3 LINE L1 5546 6179 -4 353 328 83 0 chr12 3946696 3946876 -140335613 - MIR SINE MIR -21 241 47 1008 244 47 0 chr12 3946922 3947135 -140335354 - MER58A DNA MER1_type 0 224 2 21344 165 28 9 chr12 3947908 3953224 -140329265 - L1PA13 LINE L1 0 6814 1354 207 69 0 0 chr12 3953224 3953253 -140329236 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 21344 165 28 9 chr12 3953253 3954203 -140328286 - L1PA13 LINE L1 -5460 1354 423 1963 177 12 0 chr12 3954205 3954550 -140327939 - L1P LINE L1 -4173 1973 1625 * 2640 138 30 0 chr12 3954548 3954953 -140327536 - L1PA13 LINE L1 -6370 417 1 1726 188 18 3 chr12 3956630 3956966 -140325523 + MER58B DNA MER1_type 1 341 0 190 260 94 42 chr12 3957257 3957353 -140325136 - MIR SINE MIR -138 124 24 578 263 67 10 chr12 3958088 3958282 -140324207 - MIR SINE MIR -12 250 46 528 237 79 7 chr12 3958655 3958807 -140323682 + MIR3 SINE MIR 43 205 -3 375 259 112 18 chr12 3959702 3959872 -140322617 - MIR SINE MIR 0 262 77 237 65 0 0 chr12 3960003 3960034 -140322455 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 207 246 35 35 chr12 3960232 3960289 -140322200 + MIR SINE MIR 68 124 -84 186 340 104 0 chr12 3960437 3960543 -140321946 + L2 LINE L2 3155 3271 -1 600 215 14 28 chr12 3960645 3960789 -140321700 + L1ME1 LINE L1 35 176 -6220 472 274 86 0 chr12 3960789 3960906 -140321583 - MER96 DNA MER1_type? 0 175 49 356 271 194 23 chr12 3960907 3961036 -140321453 - MER96 DNA MER1_type? -24 151 1 458 318 15 0 chr12 3961036 3961168 -140321321 + L1ME1 LINE L1 169 302 -6094 * 8036 242 46 16 chr12 3961166 3963813 -140318676 + L1ME1 LINE L1 2282 5106 -1129 2257 69 42 3 chr12 3963813 3964101 -140318388 - AluY SINE Alu -12 299 1 8036 242 46 16 chr12 3964101 3965158 -140317331 + L1ME1 LINE L1 5106 6129 -106 206 346 143 9 chr12 3965934 3966151 -140316338 - L3b LINE CR1 -50 1533 1288 498 229 66 0 chr12 3966424 3966546 -140315943 + MER21B LTR ERV1 610 739 -124 455 259 0 27 chr12 3966563 3966675 -140315814 + MER63 DNA MER1_type 17 751 -311 411 220 229 0 chr12 3967180 3967289 -140315200 + MIR SINE MIR 12 145 -117 2057 133 0 10 chr12 3967327 3967620 -140314869 - AluSx SINE Alu -22 290 1 205 258 30 0 chr12 3967677 3967743 -140314746 + A-rich Low_complexity Low_complexity 1 68 0 322 261 33 26 chr12 3967940 3968093 -140314396 - L3b LINE CR1 -217 1366 1213 685 273 55 45 chr12 3968900 3969132 -140313357 + LTR16A1 LTR ERVL 147 385 -72 2428 39 0 3 chr12 3969132 3969441 -140313048 - AluY SINE Alu 0 308 1 685 273 55 45 chr12 3969441 3969515 -140312974 + LTR16A1 LTR ERVL 385 457 0 2367 92 3 0 chr12 3970212 3970504 -140311985 + AluSx SINE Alu 1 293 -19 279 262 75 19 chr12 3970521 3970628 -140311861 + MIR SINE MIR 118 230 -32 262 289 0 67 chr12 3970664 3970754 -140311735 - L1ME LINE L1 -476 5645 5562 1316 190 88 51 chr12 3971027 3971229 -140311260 - MLT1A1 LTR MaLR 0 365 143 2420 97 0 0 chr12 3971229 3971538 -140310951 + AluSc SINE Alu 1 309 0 1316 190 88 51 chr12 3971538 3971687 -140310802 - MLT1A1 LTR MaLR -222 143 1 1626 156 22 0 chr12 3971694 3971969 -140310520 - MLT1A1-int LTR MaLR -7 1728 1448 * 3293 165 34 0 chr12 3971966 3972523 -140309966 - MLT1A1-int LTR MaLR -1159 576 1 2494 143 14 32 chr12 3972984 3973416 -140309073 - MSTA LTR MaLR 0 428 5 391 264 121 22 chr12 3974899 3975081 -140307408 - L2 LINE L2 0 3313 3114 242 197 145 34 chr12 3975311 3975428 -140307061 + L1ME4a LINE L1 5991 6120 -1 195 301 60 0 chr12 3975804 3975887 -140306602 - L2 LINE L2 0 3313 3226 8436 117 20 21 chr12 3976387 3977689 -140304800 - HSMAR2 DNA Mariner -2 1300 1 192 306 14 14 chr12 3977771 3977843 -140304646 - L2 LINE L2 -211 3061 2990 712 254 47 25 chr12 3978678 3978914 -140303575 + MIR SINE MIR 18 258 -4 1305 185 68 16 chr12 3979183 3979491 -140302998 + MER33 DNA MER1_type 1 324 0 360 200 67 0 chr12 3979493 3979568 -140302921 + L2 LINE L2 3191 3270 -43 191 244 0 0 chr12 3980020 3980065 -140302424 + MIR SINE MIR 87 131 -77 2246 125 0 3 chr12 3980552 3980865 -140301624 + AluSq SINE Alu 1 312 -1 988 91 28 11 chr12 3980873 3980923 -140301566 + (GAAA)n Simple_repeat Simple_repeat 1 229 0 988 91 28 11 chr12 3980923 3981099 -140301390 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 551 70 0 23 chr12 3981123 3981209 -140301280 + (GAAA)n Simple_repeat Simple_repeat 1 84 0 183 281 18 0 chr12 3981897 3981954 -140300535 - L2 LINE L2 -8 3264 3207 965 120 0 0 chr12 3981968 3982149 -140300340 + FLAM_C SINE Alu 1 181 0 855 172 80 31 chr12 3982156 3982319 -140300170 + FRAM SINE Alu 1 163 -13 480 211 35 0 chr12 3982429 3982543 -140299946 + L1ME4a LINE L1 5956 6073 -48 339 320 93 0 chr12 3982764 3982914 -140299575 + L2 LINE L2 3102 3265 -7 262 240 240 24 chr12 3983009 3983134 -140299355 - MIR SINE MIR -30 232 81 498 299 45 0 chr12 3983563 3983720 -140298769 + MIR3 SINE MIR 13 176 -32 261 333 29 9 chr12 3983816 3983921 -140298568 + L2 LINE L2 3134 3240 -32 1223 216 144 29 chr12 3985910 3986337 -140296152 - MLT1D LTR MaLR -1 480 27 290 246 66 72 chr12 3986359 3986526 -140295963 + MER5B DNA MER1_type 1 166 -12 470 181 116 55 chr12 3986724 3986923 -140295566 - MER20B DNA MER1_type 0 783 573 610 108 12 0 chr12 3986961 3987044 -140295445 - U6 snRNA snRNA -23 84 1 521 180 10 0 chr12 3987044 3987144 -140295345 - MER20B DNA MER1_type -168 615 515 252 143 0 0 chr12 3987548 3987590 -140294899 + (A)n Simple_repeat Simple_repeat 1 42 0 2447 81 3 0 chr12 3987592 3987890 -140294599 + AluSc SINE Alu 1 299 -10 842 170 14 0 chr12 3988468 3988615 -140293874 + L1PA16 LINE L1 6015 6163 -3 234 254 0 0 chr12 3989834 3989893 -140292596 + L2 LINE L2 3212 3270 -2 2111 132 0 3 chr12 3990139 3990434 -140292055 + AluSc SINE Alu 1 294 -15 243 320 52 11 chr12 3990445 3990623 -140291866 + MIR SINE MIR 2 145 -63 476 270 90 58 chr12 3990851 3991162 -140291327 - Charlie8 DNA MER1_type -1957 460 140 1217 232 103 31 chr12 3991215 3991672 -140290817 + L1MC4a LINE L1 5688 6177 -1631 2191 176 67 5 chr12 3992341 3992772 -140289717 + MLT1C LTR MaLR 10 467 0 271 269 0 13 chr12 3994006 3994084 -140288405 + MLT1L LTR MaLR 1 77 -538 562 247 195 24 chr12 3994243 3994494 -140287995 + MLT1L LTR MaLR 310 603 -12 360 0 0 0 chr12 3994589 3994629 -140287860 + (CA)n Simple_repeat Simple_repeat 2 41 0 2507 56 0 23 chr12 3994690 3994993 -140287496 - AluY SINE Alu -15 296 1 205 286 26 13 chr12 3995031 3995108 -140287381 - L2 LINE L2 -2 3311 3234 3757 142 23 77 chr12 3995125 3995337 -140287152 + L1MA9 LINE L1 5571 5793 -519 276 30 0 0 chr12 3995337 3995370 -140287119 + (TG)n Simple_repeat Simple_repeat 1 33 0 3757 142 23 77 chr12 3995370 3995941 -140286548 + L1MA9 LINE L1 5793 6312 0 586 256 117 9 chr12 3996213 3996443 -140286046 - MIR SINE MIR -6 256 2 557 243 75 17 chr12 3996443 3996616 -140285873 + MER5A DNA MER1_type 3 185 -4 873 335 71 33 chr12 3996783 3997638 -140284851 - L2 LINE L2 -581 2733 1846 216 181 24 96 chr12 3997635 3997718 -140284771 - L2 LINE L2 -4 3268 3192 * 786 315 64 34 chr12 3997878 3998437 -140284052 - L2 LINE L2 -277 3036 2462 23 0 0 0 chr12 3998958 3998981 -140283508 + AT_rich Low_complexity Low_complexity 1 23 0 857 262 104 29 chr12 3999122 3999899 -140282590 + L1MDa LINE L1 1030 1934 -4448 325 327 36 38 chr12 3999916 4000154 -140282335 + MIR SINE MIR 20 256 -6 2330 82 10 0 chr12 4000370 4000661 -140281828 + AluSg SINE Alu 1 294 -16 191 299 15 0 chr12 4001147 4001214 -140281275 + MIR SINE MIR 47 114 -148 586 217 31 37 chr12 4001444 4001605 -140280884 + MIR SINE MIR 10 169 -93 221 150 0 0 chr12 4002291 4002331 -140280158 - MIR SINE MIR -67 141 102 298 247 37 0 chr12 4004302 4004383 -140278106 + MIR SINE MIR 83 166 -96 310 305 98 6 chr12 4005182 4005346 -140277143 + MIR SINE MIR 36 214 -48 569 110 11 0 chr12 4005593 4005684 -140276805 + L1MB3 LINE L1 6088 6179 -4 2250 119 0 19 chr12 4006208 4006573 -140275916 + AluSp SINE Alu 1 313 0 1160 108 23 11 chr12 4006899 4007075 -140275414 + MLT1A2 LTR MaLR 1 178 -196 254 138 12 50 chr12 4007075 4007155 -140275334 + CT-rich Low_complexity Low_complexity 1 77 0 727 208 126 1 chr12 4007157 4007330 -140275159 + MLT1B LTR MaLR 163 382 -8 659 208 30 86 chr12 4007852 4008049 -140274440 + MIR SINE MIR 29 214 -48 742 275 9 13 chr12 4009693 4009922 -140272567 + MIR SINE MIR 2 229 -33 389 243 29 0 chr12 4009950 4010053 -140272436 - MER94 DNA DNA -17 117 12 189 74 0 0 chr12 4010481 4010508 -140271981 + (TTG)n Simple_repeat Simple_repeat 2 28 0 428 0 19 0 chr12 4010512 4010564 -140271925 + (TG)n Simple_repeat Simple_repeat 2 54 0 2230 120 7 0 chr12 4010642 4010951 -140271538 - AluSq SINE Alu -2 311 1 237 306 126 0 chr12 4011022 4011133 -140271356 + MIR SINE MIR 21 145 -117 663 246 33 6 chr12 4011787 4011970 -140270519 + MIR SINE MIR 48 235 -27 537 110 0 0 chr12 4013027 4013118 -140269371 + (CA)n Simple_repeat Simple_repeat 1 91 0 532 150 0 50 chr12 4013373 4013473 -140269016 + MIR3 SINE MIR 85 179 -29 29 0 0 0 chr12 4013678 4013707 -140268782 + GC_rich Low_complexity Low_complexity 1 29 0 331 263 116 37 chr12 4014442 4014632 -140267857 + L2 LINE L2 2864 3068 -204 341 206 10 69 chr12 4015009 4015111 -140267378 - MIR3 SINE MIR -10 198 103 550 250 102 10 chr12 4015238 4015434 -140267055 + MIR SINE MIR 7 220 -42 238 233 0 0 chr12 4016123 4016166 -140266323 + MER45A DNA AcHobo 1 43 -135 1340 81 0 71 chr12 4016167 4016365 -140266124 - MER1B DNA MER1_type 0 339 156 266 141 14 141 chr12 4016341 4016412 -140266077 - MER1B DNA MER1_type -275 62 1 * 561 263 8 8 chr12 4016417 4016550 -140265939 + MER45A DNA AcHobo 43 175 -3 185 295 114 0 chr12 4018530 4018635 -140263854 - MIR3 SINE MIR -22 186 70 2617 95 28 8 chr12 4019279 4019636 -140262853 - THE1B LTR MaLR 0 364 1 517 310 0 11 chr12 4019954 4020128 -140262361 + MIR SINE MIR 72 243 -19 206 170 0 21 chr12 4020135 4020182 -140262307 + GA-rich Low_complexity Low_complexity 4 49 0 388 111 0 123 chr12 4020206 4020287 -140262202 + AluJo SINE Alu 81 151 -151 2283 113 147 26 chr12 4020287 4020454 -140262035 + MSTA LTR MaLR 1 147 -281 2589 87 20 0 chr12 4020454 4020799 -140261690 + THE1A LTR MaLR 1 352 -3 2283 113 147 26 chr12 4020799 4021013 -140261476 + MSTA LTR MaLR 147 428 0 553 163 0 0 chr12 4021024 4021252 -140261237 + AluJ/FRAM SINE Alu 220 447 0 181 275 25 38 chr12 4021448 4021528 -140260961 - MIR3 SINE MIR -21 187 109 315 314 71 40 chr12 4021653 4021879 -140260610 + L1ME1 LINE L1 11 243 -6616 260 289 37 23 chr12 4022260 4022459 -140260030 + L1M4b LINE L1 1035 1345 -5602 2411 97 0 0 chr12 4022471 4022770 -140259719 + AluSg SINE Alu 1 299 -11 2190 123 0 16 chr12 4022773 4023089 -140259400 + AluY SINE Alu 1 311 0 1140 254 62 18 chr12 4023102 4023503 -140258986 + L1M4b LINE L1 1209 1627 -5232 1796 256 46 49 chr12 4023510 4024354 -140258135 + L1M4b LINE L1 2273 3114 -4024 2209 238 30 30 chr12 4024426 4025032 -140257457 + L1ME1 LINE L1 394 999 -5439 328 267 57 0 chr12 4025038 4025143 -140257346 + L1MCb LINE L1 1425 1535 -5324 276 189 0 0 chr12 4025145 4025198 -140257291 + L1ME1 LINE L1 1008 1060 -5378 2056 178 37 32 chr12 4025199 4025745 -140256744 - MLT2A2 LTR ERVL 0 554 1 3321 189 53 22 chr12 4025749 4025829 -140256660 + L1ME1 LINE L1 1064 1140 -5787 2485 67 0 0 chr12 4025829 4026126 -140256363 + AluY SINE Alu 1 297 -14 3321 189 53 22 chr12 4026126 4027029 -140255460 + L1ME1 LINE L1 1140 2075 -4852 315 75 0 0 chr12 4027029 4027069 -140255420 - MLT2B1 LTR ERVL -2 462 423 396 0 0 0 chr12 4027069 4027113 -140255376 + (CA)n Simple_repeat Simple_repeat 2 45 0 377 265 0 24 chr12 4027122 4027288 -140255201 + CT-rich Low_complexity Low_complexity 1 162 0 1897 208 88 14 chr12 4027381 4027799 -140254690 - MLT2B1 LTR ERVL -71 449 1 1712 198 275 15 chr12 4027810 4028009 -140254480 + L1ME1 LINE L1 2099 2245 -4712 2647 55 0 0 chr12 4028009 4028319 -140254170 - AluY SINE Alu -1 310 1 1712 198 275 15 chr12 4028319 4028806 -140253683 + L1ME1 LINE L1 2245 2964 -3993 1369 161 5 0 chr12 4028856 4029067 -140253422 + AluSp SINE Alu 1 212 -101 374 109 0 0 chr12 4029067 4029122 -140253367 + AluSp SINE Alu 78 132 -171 2442 80 3 0 chr12 4029124 4029423 -140253066 + AluSp SINE Alu 1 300 -13 3145 210 50 21 chr12 4029426 4030350 -140252139 + L1ME1 LINE L1 2968 3919 -3038 3049 245 41 28 chr12 4030353 4031259 -140251230 + L1ME1 LINE L1 5302 6195 -950 2507 68 0 0 chr12 4031259 4031551 -140250938 + AluY SINE Alu 1 292 -19 3049 245 41 28 chr12 4031551 4031999 -140250490 + L1ME1 LINE L1 6195 6636 -509 2328 71 3 17 chr12 4031999 4032296 -140250193 + AluY SINE Alu 1 293 -18 3049 245 41 28 chr12 4032296 4032588 -140249901 + L1ME1 LINE L1 6636 7145 0 396 271 103 51 chr12 4033473 4033765 -140248724 - L2 LINE L2 -2 3311 3005 2326 66 10 30 chr12 4034914 4035218 -140247271 + AluY SINE Alu 1 298 -13 1832 112 52 75 chr12 4035433 4035648 -140246841 + THE1C LTR MaLR 1 205 -170 207 0 0 0 chr12 4035648 4035671 -140246818 + (TC)n Simple_repeat Simple_repeat 1 23 0 1832 112 52 75 chr12 4035671 4035839 -140246650 + THE1C LTR MaLR 205 375 0 927 270 206 32 chr12 4036560 4037570 -140244919 - L2 LINE L2 -38 3275 2075 285 343 62 19 chr12 4037583 4037793 -140244696 + L2 LINE L2 2661 2879 -435 373 130 0 26 chr12 4037914 4037991 -140244498 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 25 0 0 0 chr12 4039116 4039141 -140243348 + AT_rich Low_complexity Low_complexity 1 25 0 1487 209 20 29 chr12 4039184 4039533 -140242956 - L1ME2 LINE L1 -28 6136 5791 3050 213 83 18 chr12 4039539 4040299 -140242190 - L1ME1 LINE L1 -35 6200 5392 861 60 0 0 chr12 4040318 4040418 -140242071 + AluSg SINE Alu 1 100 -210 2265 112 0 3 chr12 4040466 4040769 -140241720 + AluSg SINE Alu 1 302 -8 7156 216 93 89 chr12 4040769 4041524 -140240965 - L1ME1 LINE L1 -846 5369 4619 1113 184 44 0 chr12 4041524 4041730 -140240759 - AluJb SINE Alu -14 298 84 7156 216 93 89 chr12 4041730 4042411 -140240078 - L1ME1 LINE L1 -1596 4619 3943 2444 113 88 10 chr12 4042411 4042808 -140239681 + MSTA LTR MaLR 1 428 0 7156 216 93 89 chr12 4042808 4043019 -140239470 - L1ME1 LINE L1 -2272 3943 3734 2273 103 3 19 chr12 4043019 4043329 -140239160 - AluSx SINE Alu -7 305 1 7156 216 93 89 chr12 4043329 4043766 -140238723 - L1ME1 LINE L1 -2481 3734 3300 2279 99 6 13 chr12 4043766 4044078 -140238411 - AluSq SINE Alu -3 310 1 7156 216 93 89 chr12 4044078 4044162 -140238327 - L1ME1 LINE L1 -2915 3300 3218 622 216 0 43 chr12 4044162 4044323 -140238166 - FLAM_A SINE Alu 0 133 1 7156 216 93 89 chr12 4044323 4045506 -140236983 - L1ME1 LINE L1 -2997 3218 1853 2482 72 7 3 chr12 4045506 4045813 -140236676 - AluY SINE Alu -3 308 1 7156 216 93 89 chr12 4045813 4046029 -140236460 - L1ME1 LINE L1 -4362 1853 1639 4919 139 57 4 chr12 4046021 4047058 -140235431 - L1MB1 LINE L1 0 6168 5078 * 9141 73 22 4 chr12 4047051 4048310 -140234179 - L1PA7 LINE L1 -897 5249 3969 6958 49 2 24 chr12 4048310 4049224 -140233265 + L1PA7 LINE L1 5260 6154 0 3364 188 57 6 chr12 4049226 4050017 -140232472 - L1MB1 LINE L1 -1056 5090 4260 467 301 0 7 chr12 4050364 4050507 -140231982 - L1ME1 LINE L1 -6120 276 135 1627 141 44 0 chr12 4050602 4050872 -140231617 - MSTB LTR MaLR -144 282 1 212 220 160 0 chr12 4050876 4050926 -140231563 - MIR SINE MIR -200 62 5 687 226 61 8 chr12 4052064 4052249 -140230240 + LTR50 LTR ERVL 1 176 -600 472 257 153 8 chr12 4052419 4052668 -140229821 + LTR50 LTR ERVL 503 787 -8 338 196 244 11 chr12 4052788 4052917 -140229572 + MIR SINE MIR 2 159 -49 382 178 0 0 chr12 4052922 4052995 -140229494 + MER53 DNA DNA 36 108 -81 2174 82 0 4 chr12 4053063 4053342 -140229147 + AluSx SINE Alu 1 278 -34 192 97 0 0 chr12 4053953 4053984 -140228505 + (CA)n Simple_repeat Simple_repeat 2 32 0 713 270 172 0 chr12 4055231 4055435 -140227054 - MIR SINE MIR -21 241 3 2504 81 0 0 chr12 4055499 4055809 -140226680 + AluY SINE Alu 1 310 -1 214 231 0 0 chr12 4057119 4057158 -140225331 - L3 LINE CR1 -11 1566 1528 260 290 0 0 chr12 4057249 4057311 -140225178 - L2 LINE L2 -2 3311 3250 674 310 49 13 chr12 4057496 4057722 -140224767 - L3b LINE CR1 -123 1460 1227 1673 228 68 36 chr12 4058152 4058678 -140223811 + MER74B LTR ERVL 58 600 -22 695 187 231 93 chr12 4058685 4059006 -140223483 - MLT1A1 LTR MaLR 0 365 1 407 181 37 0 chr12 4059803 4059891 -140222598 + MLT1A2 LTR MaLR 1 97 -268 * 598 161 34 1 chr12 4059883 4060006 -140222483 + MLT1A2 LTR MaLR 256 467 0 389 314 16 0 chr12 4060258 4060382 -140222107 + L3 LINE CR1 691 816 -761 396 242 87 0 chr12 4060451 4060612 -140221877 - L1ME4a LINE L1 -225 5896 5722 416 347 181 14 chr12 4060654 4061095 -140221394 + L3 LINE CR1 802 1316 -261 320 313 35 76 chr12 4061261 4061459 -140221030 + L2 LINE L2 2085 2274 -1040 289 303 123 59 chr12 4061526 4061948 -140220541 - MLT1K LTR MaLR -3 585 137 319 316 48 119 chr12 4062306 4062743 -140219746 + L2 LINE L2 2857 3262 -10 330 298 172 40 chr12 4063484 4063682 -140218807 - MIR SINE MIR -18 244 21 321 306 144 39 chr12 4064474 4064703 -140217786 + L3b LINE CR1 1304 1556 -27 2486 61 7 3 chr12 4065134 4065444 -140217045 + AluY SINE Alu 1 311 0 252 311 185 0 chr12 4065448 4065583 -140216906 + L3 LINE CR1 1345 1504 -73 278 296 144 24 chr12 4065621 4065746 -140216743 + L2 LINE L2 3133 3272 0 2197 226 42 4 chr12 4065805 4066358 -140216131 + MER90 LTR ERV1 1 574 -1 1012 223 34 13 chr12 4066489 4066722 -140215767 - MIR SINE MIR -2 260 23 526 290 22 65 chr12 4067093 4067324 -140215165 + L2 LINE L2 2976 3196 -76 265 286 29 14 chr12 4067632 4067702 -140214787 - MIR SINE MIR -104 104 34 2187 129 0 10 chr12 4071024 4071334 -140211155 + AluSx SINE Alu 1 307 -5 591 111 0 0 chr12 4071334 4071415 -140211074 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 628 119 23 40 chr12 4071415 4071591 -140210898 + GA-rich Low_complexity Low_complexity 3 175 0 267 321 19 38 chr12 4071623 4071729 -140210760 - L3 LINE CR1 -52 1525 1422 210 315 71 16 chr12 4073194 4073321 -140209168 + L3b LINE CR1 1350 1483 -100 2392 88 0 7 chr12 4073515 4073821 -140208668 - AluSx SINE Alu -8 304 1 201 324 44 0 chr12 4075360 4075428 -140207061 - L3 LINE CR1 -19 1558 1488 21 36 0 0 chr12 4075878 4075906 -140206583 + AT_rich Low_complexity Low_complexity 1 28 0 705 298 187 39 chr12 4075943 4076527 -140205962 - L3 LINE CR1 -114 1463 794 669 294 216 13 chr12 4076941 4077329 -140205160 - L3 LINE CR1 -787 790 324 1368 133 0 5 chr12 4077438 4077626 -140204863 + AluSg/x SINE Alu 104 290 -22 2392 82 0 0 chr12 4077626 4077920 -140204569 + AluY SINE Alu 1 294 -17 360 302 121 13 chr12 4078538 4078687 -140203802 - MER5A DNA MER1_type -24 165 1 918 321 181 28 chr12 4078714 4080070 -140202419 + L2 LINE L2 1083 2645 -669 902 189 19 53 chr12 4080086 4080292 -140202197 - MER20 DNA MER1_type -20 199 1 509 311 28 6 chr12 4080292 4080469 -140202020 + L2 LINE L2 2660 2840 -474 193 364 116 23 chr12 4080525 4080698 -140201791 + L2 LINE L2 2788 2976 -338 300 300 12 0 chr12 4080859 4080939 -140201550 + L2 LINE L2 3228 3308 -5 255 254 61 50 chr12 4081699 4081880 -140200609 + L1MC5 LINE L1 7732 7914 -47 2667 17 0 3 chr12 4083033 4083334 -140199155 + AluY SINE Alu 1 300 -11 251 269 17 34 chr12 4084069 4084188 -140198301 - L1MC4a LINE L1 -1874 5934 5818 339 215 0 0 chr12 4084188 4084253 -140198236 + L2 LINE L2 3249 3313 0 838 287 108 25 chr12 4084254 4084350 -140198139 - L1MC4a LINE L1 -1986 5822 5735 2175 111 3 3 chr12 4084350 4084648 -140197841 + AluSx SINE Alu 1 298 -14 838 287 108 25 chr12 4084648 4084948 -140197541 - L1MC4a LINE L1 -2073 5735 5393 2177 77 3 24 chr12 4086447 4086745 -140195744 - AluY SINE Alu -19 292 1 2203 89 13 7 chr12 4088983 4089287 -140193202 + AluSg SINE Alu 1 306 -4 549 327 80 9 chr12 4090075 4090301 -140192188 + MIR SINE MIR 5 246 -16 811 240 144 0 chr12 4091363 4091592 -140190897 - MIR SINE MIR 0 262 1 293 251 18 104 chr12 4092157 4092320 -140190169 + MIR SINE MIR 79 227 -35 1484 194 17 17 chr12 4094034 4094323 -140188166 + AluJo SINE Alu 1 289 -23 2484 261 46 24 chr12 4094343 4095067 -140187422 + L1M4b LINE L1 69 816 -6043 2177 134 0 3 chr12 4095067 4095381 -140187108 + AluSq SINE Alu 1 313 0 2484 261 46 24 chr12 4095381 4095507 -140186982 + L1M4b LINE L1 816 938 -5921 227 143 0 127 chr12 4095740 4095803 -140186686 + L1M4b LINE L1 1160 1214 -5645 1883 223 44 77 chr12 4096016 4097217 -140185272 + L1M4b LINE L1 1205 2329 -4630 4209 164 11 9 chr12 4097342 4098087 -140184402 + L1MA4 LINE L1 1241 1986 -4579 3566 209 46 30 chr12 4098114 4098764 -140183725 + L1MA4 LINE L1 3344 3982 -3583 183 42 0 0 chr12 4098764 4098788 -140183701 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3566 209 46 30 chr12 4098788 4099458 -140183031 + L1MA4 LINE L1 3982 4694 -2871 181 0 0 65 chr12 4099869 4099900 -140182589 + (CCG)n Simple_repeat Simple_repeat 3 31 0 9749 148 25 39 chr12 4106993 4107195 -140175294 + L1MA4 LINE L1 4668 4871 -2848 2511 75 0 3 chr12 4107195 4107503 -140174986 + AluY SINE Alu 5 311 0 9749 148 25 39 chr12 4107503 4107523 -140174966 + L1MA4 LINE L1 4871 4890 -2829 1645 193 30 3 chr12 4107523 4107823 -140174666 + AluJo SINE Alu 5 312 0 9749 148 25 39 chr12 4107823 4110675 -140171814 + L1MA4 LINE L1 4890 7707 -12 30 45 0 0 chr12 4110676 4110720 -140171769 + AT_rich Low_complexity Low_complexity 1 44 0 4661 154 35 5 chr12 4111020 4111847 -140170642 + Tigger4(Zombi) DNA MER2_type 1 852 -1879 37200 74 8 9 chr12 4111858 4117995 -140164494 + L1PA6 LINE L1 11 6143 -11 9001 127 29 14 chr12 4118003 4119520 -140162969 + Tigger4(Zombi) DNA MER2_type 835 2373 -358 2181 116 0 26 chr12 4119524 4119834 -140162655 + AluSx SINE Alu 1 302 -10 602 188 23 0 chr12 4119834 4119962 -140162527 + Tigger4(Zombi) DNA MER2_type 2542 2672 -59 936 228 46 49 chr12 4119967 4120000 -140162489 + L1MEc LINE L1 2181 2213 -4002 2104 105 14 3 chr12 4120000 4120294 -140162195 + AluSg SINE Alu 1 297 -13 936 228 46 49 chr12 4120294 4120640 -140161849 + L1MEc LINE L1 2213 2526 -3689 * 1659 240 82 99 chr12 4120639 4121370 -140161119 + MLT1A1-int LTR MaLR 410 1121 -250 1503 150 13 86 chr12 4121370 4121684 -140160805 - AluJo SINE Alu -11 301 11 1659 240 82 99 chr12 4121684 4121927 -140160562 + MLT1A1-int LTR MaLR 1121 1367 -4 623 212 36 7 chr12 4121938 4122075 -140160414 + MLT1A1 LTR MaLR 1 141 -224 1076 204 58 10 chr12 4122080 4122459 -140160030 - L1MC/D LINE L1 -743 5472 5150 2197 82 0 4 chr12 4122459 4122738 -140159751 + AluY SINE Alu 1 278 -33 345 104 68 0 chr12 4122754 4122837 -140159652 + L1M LINE L1 5337 5427 -742 1676 155 6 79 chr12 4122862 4123178 -140159311 + AluJo SINE Alu 1 293 -19 265 225 0 0 chr12 4123188 4123268 -140159221 - L1MC/D LINE L1 -1086 5129 5050 28 71 0 0 chr12 4123272 4123328 -140159161 + AT_rich Low_complexity Low_complexity 1 56 0 2498 232 125 6 chr12 4123328 4124211 -140158278 - L1MC/D LINE L1 -1159 5056 4069 1946 233 67 42 chr12 4124211 4124790 -140157699 - MER77 LTR ERV1 0 605 12 5019 250 60 9 chr12 4124798 4126725 -140155764 - L1MEc LINE L1 -2139 4076 2084 662 279 77 0 chr12 4126861 4127108 -140155381 + L2 LINE L2 1897 2162 -1152 1866 143 4 0 chr12 4128895 4129161 -140153328 + AluSx SINE Alu 1 267 -45 457 261 232 44 chr12 4129161 4129544 -140152945 + L2 LINE L2 2213 2667 -647 1808 196 70 21 chr12 4129545 4130019 -140152470 - MLT1D LTR MaLR -8 497 1 891 301 117 24 chr12 4130038 4130623 -140151866 + L2 LINE L2 2670 3295 -18 1156 210 0 13 chr12 4130640 4130869 -140151620 - Tigger7 DNA MER2_type -486 247 22 567 242 8 8 chr12 4131335 4131463 -140151026 - L2 LINE L2 -2 3311 3184 1563 168 90 9 chr12 4132008 4132330 -140150159 + MER7A DNA MER2_type 1 346 0 3604 162 56 9 chr12 4132484 4133158 -140149331 + MER39 LTR ERV1 1 706 -1 854 115 0 0 chr12 4133533 4133663 -140148826 + AluSg/x SINE Alu 172 301 -9 309 248 239 0 chr12 4134421 4134534 -140147955 + MIR SINE MIR 120 259 -3 2098 117 0 7 chr12 4134978 4135277 -140147212 - AluSx SINE Alu -15 297 1 207 178 44 0 chr12 4135582 4135627 -140146862 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 238 246 172 30 chr12 4135886 4136089 -140146400 - L1 LINE L1 -1710 4436 4205 2214 112 3 0 chr12 4136223 4136519 -140145970 - AluSx SINE Alu -12 300 4 346 311 35 44 chr12 4136550 4136916 -140145573 - L1 LINE L1 -2153 3993 3631 251 209 104 15 chr12 4137386 4137453 -140145036 + Charlie8 DNA MER1_type 172 244 -2173 511 188 21 0 chr12 4137662 4137758 -140144731 - Tigger7 DNA MER2_type -2 2489 2392 * 901 244 81 8 chr12 4137757 4137796 -140144693 - Tigger7 DNA MER2_type -467 266 231 14796 122 19 30 chr12 4137796 4138016 -140144473 - Tigger1 DNA MER2_type 0 2418 2197 2337 96 0 0 chr12 4138016 4138308 -140144181 + AluSx SINE Alu 1 292 -20 14796 122 19 30 chr12 4138308 4139666 -140142823 - Tigger1 DNA MER2_type -221 2197 871 2280 103 0 10 chr12 4139666 4139976 -140142513 - AluY SINE Alu -3 308 2 14796 122 19 30 chr12 4139976 4140839 -140141650 - Tigger1 DNA MER2_type -1547 871 1 901 244 81 8 chr12 4140839 4141045 -140141444 - Tigger7 DNA MER2_type -502 231 3 1693 156 69 39 chr12 4141053 4141386 -140141103 - MER2 DNA MER2_type -1 343 1 884 255 91 98 chr12 4142881 4143308 -140139181 - L2 LINE L2 0 3313 2890 297 0 0 0 chr12 4143309 4143342 -140139147 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 303 104 0 0 chr12 4143341 4143389 -140139100 + (TG)n Simple_repeat Simple_repeat 2 49 0 545 288 56 10 chr12 4143504 4143717 -140138772 - MIR SINE MIR -22 240 19 302 139 58 105 chr12 4144200 4144286 -140138203 + L1MB8 LINE L1 6095 6176 -2 979 263 3 24 chr12 4144557 4144854 -140137635 - AluY SINE Alu -9 302 12 226 333 12 0 chr12 4144948 4145032 -140137457 - AluSg/x SINE Alu -15 285 201 453 220 0 0 chr12 4145255 4145373 -140137116 + L1MEc LINE L1 996 1113 -5283 2297 91 0 29 chr12 4145379 4145687 -140136802 + AluY SINE Alu 4 302 -9 381 207 12 0 chr12 4145688 4145770 -140136719 + L1MB5 LINE L1 6082 6164 -10 717 170 15 0 chr12 4145816 4145951 -140136538 + L1PA16 LINE L1 6025 6161 -5 25 0 0 0 chr12 4145951 4145976 -140136513 + AT_rich Low_complexity Low_complexity 1 25 0 2428 58 0 19 chr12 4147120 4147428 -140135061 - AluY SINE Alu -9 302 1 646 94 0 0 chr12 4147511 4147596 -140134893 - AluSg/x SINE Alu -25 284 200 531 271 39 13 chr12 4147707 4147862 -140134627 + MIR3 SINE MIR 41 199 -9 228 339 34 0 chr12 4147927 4147986 -140134503 - L2 LINE L2 -72 3200 3140 189 231 0 0 chr12 4148842 4148881 -140133608 + L3b LINE CR1 1539 1577 -6 230 91 68 0 chr12 4149001 4149045 -140133444 + A-rich Low_complexity Low_complexity 2 48 0 641 128 220 0 chr12 4149414 4149523 -140132966 - FLAM_C SINE Alu 0 133 1 1511 158 31 8 chr12 4149694 4149976 -140132513 - AluJo SINE Alu 0 312 35 813 315 193 16 chr12 4149987 4150676 -140131813 - L3 LINE CR1 -25 1552 742 598 290 21 29 chr12 4150675 4150913 -140131576 + MIR SINE MIR 27 262 0 * 652 333 115 9 chr12 4150928 4151364 -140131125 - L3 LINE CR1 -835 742 261 501 371 55 4 chr12 4151448 4151685 -140130804 - L3 LINE CR1 -1302 275 27 449 295 20 7 chr12 4151711 4151860 -140130629 + MIR3 SINE MIR 54 204 -4 324 92 0 58 chr12 4152291 4152357 -140130132 - Alu SINE Alu 0 302 247 2282 99 0 0 chr12 4152389 4152691 -140129798 - AluY SINE Alu -9 302 1 233 304 32 70 chr12 4153627 4153725 -140128764 - L2 LINE L2 0 3313 3213 2291 89 10 23 chr12 4153725 4154029 -140128460 + AluY SINE Alu 1 300 -11 243 0 0 0 chr12 4154029 4154056 -140128433 + (TA)n Simple_repeat Simple_repeat 2 28 0 408 20 0 0 chr12 4154055 4154104 -140128385 + (GA)n Simple_repeat Simple_repeat 2 50 0 233 304 32 70 chr12 4154056 4154162 -140128327 - L2 LINE L2 -98 3215 3162 272 307 79 10 chr12 4155787 4155989 -140126500 + L2 LINE L2 1802 2017 -1297 549 55 0 0 chr12 4156104 4156177 -140126312 + (TC)n Simple_repeat Simple_repeat 1 73 0 180 295 147 11 chr12 4156181 4156276 -140126213 + L2 LINE L2 2101 2208 -1106 1747 176 3 3 chr12 4156347 4156666 -140125823 - AluJo SINE Alu 0 319 1 2929 277 77 38 chr12 4156879 4158626 -140123863 + L2 LINE L2 1493 3313 0 308 208 78 0 chr12 4159261 4159338 -140123151 - MER102a DNA MER1_type -8 322 240 409 319 22 0 chr12 4159399 4159537 -140122952 - MER102a DNA MER1_type -173 157 17 243 314 146 15 chr12 4159579 4159716 -140122773 + MIR SINE MIR 37 191 -71 190 73 49 24 chr12 4159951 4159992 -140122497 + T-rich Low_complexity Low_complexity 2 43 0 1180 350 85 20 chr12 4160528 4161476 -140121013 + L3 LINE CR1 31 1040 -537 738 282 95 16 chr12 4161561 4161926 -140120563 - L1ME4a LINE L1 -11 6093 5698 1383 289 40 13 chr12 4161936 4162413 -140120076 + L3 LINE CR1 1088 1577 0 307 310 9 26 chr12 4162592 4162708 -140119781 - MIR SINE MIR -50 212 99 469 307 82 23 chr12 4163350 4163656 -140118833 - L1ME4a LINE L1 -1299 4830 4507 812 272 113 33 chr12 4163786 4164176 -140118313 + MLT1L LTR MaLR 195 615 0 353 289 122 27 chr12 4164264 4164554 -140117935 - L1ME4a LINE L1 -1779 4350 4030 214 37 0 0 chr12 4164576 4164603 -140117886 + MER91A DNA MER1_type 37 63 -127 593 225 71 50 chr12 4164667 4164849 -140117640 - MLT1J LTR MaLR 0 511 326 266 256 83 47 chr12 4165206 4165569 -140116920 - L1ME4a LINE L1 -2933 3196 2821 903 142 103 0 chr12 4165601 4165756 -140116733 + AluSg/x SINE Alu 134 304 -6 280 309 103 15 chr12 4165777 4166371 -140116118 - L1ME4a LINE L1 -3326 2803 2138 1478 178 94 22 chr12 4166392 4166712 -140115777 + MER2 DNA MER2_type 1 343 -1 2452 58 41 0 chr12 4166884 4167177 -140115312 + AluY SINE Alu 1 305 -6 2192 106 10 0 chr12 4167352 4167644 -140114845 - AluSg1 SINE Alu -14 295 1 687 287 20 45 chr12 4167903 4168255 -140114234 - L1ME4a LINE L1 -4882 1237 895 708 263 174 57 chr12 4168291 4168751 -140113738 + MLT1H LTR MaLR 36 549 0 381 22 0 0 chr12 4169476 4169522 -140112967 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2145 97 4 0 chr12 4169524 4169803 -140112686 - AluY SINE Alu -31 280 1 1059 100 0 0 chr12 4169806 4169936 -140112553 - AluSg SINE Alu -180 130 1 22 35 0 0 chr12 4170069 4170098 -140112391 + AT_rich Low_complexity Low_complexity 1 29 0 359 323 47 8 chr12 4170460 4170587 -140111902 + L2 LINE L2 3141 3272 0 2516 56 0 7 chr12 4170956 4171259 -140111230 - AluY SINE Alu -10 301 1 2388 44 3 99 chr12 4172528 4172872 -140109617 + AluY SINE Alu 1 311 0 821 191 174 4 chr12 4173006 4173277 -140109212 - Charlie5 DNA MER1_type 0 2618 2 2639 59 0 0 chr12 4173830 4174137 -140108352 + AluY SINE Alu 1 307 -4 2501 125 5 16 chr12 4174837 4175205 -140107284 + THE1B LTR MaLR 1 364 0 230 152 51 63 chr12 4175241 4175320 -140107169 - L1M4c LINE L1 -5032 1352 1275 680 101 36 34 chr12 4175881 4176041 -140106448 - MER30 DNA MER1_type 0 230 1 460 324 56 14 chr12 4176041 4176183 -140106306 + MER91A DNA MER1_type 21 168 -28 1454 182 4 29 chr12 4176259 4176560 -140105929 + AluJo SINE Alu 15 308 0 183 42 0 0 chr12 4177485 4177509 -140104980 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2366 62 0 0 chr12 4177509 4177785 -140104704 - AluY SINE Alu -35 276 1 22 0 0 0 chr12 4177913 4177935 -140104554 + AT_rich Low_complexity Low_complexity 1 22 0 436 357 20 25 chr12 4177951 4178195 -140104294 - L2 LINE L2 -108 3164 2922 368 261 8 76 chr12 4178322 4178441 -140104048 - MLT1-int LTR MaLR -233 1138 1028 285 346 15 15 chr12 4178605 4178735 -140103754 - MLT1-int LTR MaLR -478 893 764 2286 113 7 0 chr12 4179004 4179313 -140103176 - AluSx SINE Alu -1 311 1 506 267 46 41 chr12 4179414 4179609 -140102880 - MLT1-int LTR MaLR -777 594 399 2234 130 30 28 chr12 4179621 4179983 -140102506 + THE1B LTR MaLR 1 363 -1 407 288 35 40 chr12 4180030 4180228 -140102261 - MLT1-int LTR MaLR -1158 213 17 2113 132 0 0 chr12 4180676 4180979 -140101510 - AluSx SINE Alu -9 303 1 351 353 0 20 chr12 4181074 4181224 -140101265 + MIR SINE MIR 85 231 -31 297 0 0 0 chr12 4181431 4181464 -140101025 + (A)n Simple_repeat Simple_repeat 1 33 0 183 42 0 0 chr12 4183056 4183080 -140099409 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 234 81 0 0 chr12 4183083 4183120 -140099369 + (T)n Simple_repeat Simple_repeat 1 37 0 247 161 195 11 chr12 4184604 4184691 -140097798 - MIR SINE MIR -99 163 61 257 191 209 29 chr12 4185245 4185350 -140097139 + MIR SINE MIR 50 173 -89 374 278 21 0 chr12 4185416 4185513 -140096976 + MIR SINE MIR 164 262 0 372 43 0 0 chr12 4185534 4185580 -140096909 + (CAT)n Simple_repeat Simple_repeat 3 48 0 192 339 83 18 chr12 4185904 4186013 -140096476 - L2 LINE L2 -19 3294 3179 293 211 0 0 chr12 4186026 4186083 -140096406 - MER5A DNA MER1_type -3 186 130 213 121 0 0 chr12 4187006 4187039 -140095450 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 254 364 28 0 chr12 4188439 4188582 -140093907 + L2 LINE L2 2914 3060 -212 338 136 17 0 chr12 4188730 4188789 -140093700 - MER91 DNA MER1_type -14 126 67 3623 149 0 12 chr12 4189542 4190133 -140092356 + L1PA16 LINE L1 5582 6165 -1 408 279 107 46 chr12 4190378 4190575 -140091914 + MIR SINE MIR 20 228 -34 418 370 67 26 chr12 4191051 4191392 -140091097 + L2 LINE L2 2912 3266 -6 180 111 0 0 chr12 4192031 4192058 -140090431 + (TG)n Simple_repeat Simple_repeat 2 28 0 219 333 14 0 chr12 4193379 4193451 -140089038 + MIR3 SINE MIR 127 199 -9 324 247 0 12 chr12 4195890 4195971 -140086518 + MIR SINE MIR 69 148 -114 226 160 0 40 chr12 4196002 4196052 -140086437 + L2 LINE L2 3265 3312 -1 1123 180 52 14 chr12 4196276 4196487 -140086002 - MER20 DNA MER1_type 0 219 1 7696 167 28 46 chr12 4196654 4197717 -140084772 + L1MCa LINE L1 3 1029 -5397 2501 72 0 0 chr12 4197717 4198022 -140084467 + AluY SINE Alu 1 305 -6 7696 167 28 46 chr12 4198022 4198555 -140083934 + L1MCa LINE L1 1029 1570 -4856 3886 180 27 70 chr12 4198536 4198852 -140083637 + L1MB1 LINE L1 2256 2584 -3864 * 2147 92 0 7 chr12 4198852 4199136 -140083353 + AluY SINE Alu 1 317 0 295 29 0 0 chr12 4199136 4199171 -140083318 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3886 180 27 70 chr12 4199171 4199937 -140082552 + L1MB1 LINE L1 2584 6341 -107 1992 34 0 8 chr12 4199939 4200177 -140082312 + AluY SINE Alu 1 236 -75 6615 186 68 34 chr12 4200195 4200999 -140081490 + L1MC3 LINE L1 5127 5902 -244 2007 111 50 0 chr12 4200999 4201279 -140081210 + AluSg SINE Alu 1 294 -16 6615 186 68 34 chr12 4201279 4202037 -140080452 + L1MC3 LINE L1 5902 5302 -844 222 37 0 0 chr12 4202037 4202064 -140080425 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6615 186 68 34 chr12 4202064 4202171 -140080318 + L1MC3 LINE L1 5301 5403 -743 262 233 0 0 chr12 4202268 4202311 -140080178 + LTR49-int LTR ERV1 1244 1286 -5045 1044 49 0 21 chr12 4202372 4202516 -140079973 + L1MA5 LINE L1 6158 6298 -2 567 230 58 0 chr12 4203386 4203525 -140078964 + MIR SINE MIR 106 252 -10 306 304 25 50 chr12 4203612 4203773 -140078716 + L2 LINE L2 2935 3091 -181 185 324 162 14 chr12 4204691 4204839 -140077650 - L3b LINE CR1 -310 1273 1104 1546 87 0 5 chr12 4204853 4205048 -140077441 + AluY SINE Alu 102 295 -16 2913 214 98 50 chr12 4205108 4205164 -140077325 - L1MC4 LINE L1 -3 8039 7987 1923 137 21 3 chr12 4205164 4205448 -140077041 + AluJb SINE Alu 1 289 -23 2913 214 98 50 chr12 4205448 4205622 -140076867 - L1MC4 LINE L1 -55 7987 7823 2309 125 0 0 chr12 4205622 4205933 -140076556 + AluSq SINE Alu 1 311 -2 2913 214 98 50 chr12 4205933 4205989 -140076500 - L1MC4 LINE L1 -219 7823 7771 2525 64 0 0 chr12 4205989 4206285 -140076204 + AluY SINE Alu 1 296 -15 2913 214 98 50 chr12 4206285 4207011 -140075478 - L1MC4 LINE L1 -271 7771 6977 185 317 33 0 chr12 4208773 4208833 -140073656 + MIR SINE MIR 86 147 -115 295 328 8 0 chr12 4208834 4208953 -140073536 + (TA)n Simple_repeat Simple_repeat 1 120 0 245 261 31 0 chr12 4208968 4209033 -140073456 - MIR SINE MIR -115 147 81 994 339 133 6 chr12 4209127 4209970 -140072519 + L2 LINE L2 1806 2755 -559 1901 166 54 58 chr12 4209996 4210424 -140072065 + MSTB1 LTR MaLR 7 432 0 276 370 43 24 chr12 4210424 4210743 -140071746 + L2 LINE L2 2747 3069 -203 1855 156 11 3 chr12 4211431 4211714 -140070775 - AluSx SINE Alu -18 294 10 830 196 26 0 chr12 4211788 4211941 -140070548 - MER45A DNA AcHobo -1 177 21 408 239 62 18 chr12 4211987 4212100 -140070389 - L2 LINE L2 0 3313 3196 951 57 0 0 chr12 4212100 4212222 -140070267 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 354 68 0 0 chr12 4212222 4212266 -140070223 - Alu SINE Alu -18 284 241 2136 108 4 0 chr12 4212294 4212596 -140069893 - AluSg SINE Alu 0 304 2 2456 151 66 11 chr12 4212739 4213176 -140069313 + LOR1b LTR ERV1 1 461 0 203 293 0 24 chr12 4214013 4214095 -140068394 + CT-rich Low_complexity Low_complexity 1 80 0 224 0 0 61 chr12 4214372 4214405 -140068084 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 187 388 70 0 chr12 4215424 4215553 -140066936 + L2 LINE L2 2555 2692 -622 855 297 93 41 chr12 4215554 4215606 -140066883 - L1MEd LINE L1 -824 1666 1618 991 182 41 45 chr12 4215606 4215654 -140066835 - MER20 DNA MER1_type 0 219 172 2685 32 0 3 chr12 4215654 4215964 -140066525 - AluY SINE Alu -2 309 1 991 182 41 45 chr12 4215964 4216135 -140066354 - MER20 DNA MER1_type -47 172 1 855 297 93 41 chr12 4216135 4217276 -140065213 - L1MEd LINE L1 -872 1618 538 2166 106 6 41 chr12 4217276 4217596 -140064893 - AluSc SINE Alu 0 309 1 855 297 93 41 chr12 4217596 4217655 -140064834 - L1MEd LINE L1 -1952 538 1610 1929 163 10 0 chr12 4217655 4217956 -140064533 - AluJo SINE Alu -8 304 1 855 297 93 41 chr12 4217956 4218895 -140063594 - L1MEd LINE L1 -879 1611 723 231 119 0 0 chr12 4218918 4218960 -140063529 - AluJb SINE Alu -2 300 259 1330 176 0 5 chr12 4218961 4219183 -140063306 - AluJb SINE Alu -91 221 1 712 317 67 70 chr12 4219263 4219668 -140062821 - L1MEd LINE L1 -5446 673 269 2601 53 0 3 chr12 4219668 4219969 -140062520 - AluY SINE Alu -11 300 1 712 317 67 70 chr12 4219969 4220232 -140062257 - L1MEd LINE L1 -5850 269 7 2395 93 0 0 chr12 4220331 4220632 -140061857 + AluSp SINE Alu 1 301 -12 231 250 83 0 chr12 4221007 4221067 -140061422 + L2 LINE L2 3187 3251 -21 1967 132 3 14 chr12 4221272 4221561 -140060928 - AluSx SINE Alu -26 286 1 2702 75 20 0 chr12 4221817 4222165 -140060324 - THE1A LTR MaLR 0 355 1 306 125 0 0 chr12 4222365 4222413 -140060076 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 243 232 0 0 chr12 4222419 4222475 -140060014 - L2 LINE L2 0 3272 3217 2372 101 0 3 chr12 4222517 4222825 -140059664 + AluSg SINE Alu 1 307 -3 215 288 14 27 chr12 4222923 4222996 -140059493 - L2 LINE L2 0 3313 3242 201 182 0 0 chr12 4223117 4223150 -140059339 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 195 348 58 0 chr12 4224567 4224636 -140057853 + L2 LINE L2 3138 3210 -62 328 264 0 36 chr12 4225467 4225577 -140056912 + MIR3 SINE MIR 82 187 -21 * 349 208 52 42 chr12 4225574 4225670 -140056819 + L2 LINE L2 3176 3272 0 208 238 75 12 chr12 4225713 4225793 -140056696 + MIR SINE MIR 36 120 -88 * 354 186 35 23 chr12 4225788 4225874 -140056615 - MIR SINE MIR -87 121 35 691 272 41 0 chr12 4226540 4226735 -140055754 + MIR SINE MIR 53 255 -7 207 244 0 0 chr12 4226904 4226949 -140055540 - MIR3 SINE MIR -50 158 114 544 222 20 118 chr12 4227028 4227154 -140055335 + MIR SINE MIR 63 200 -62 234 0 0 0 chr12 4227154 4227180 -140055309 + (TA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr12 4227185 4227210 -140055279 + (CA)n Simple_repeat Simple_repeat 2 26 0 544 222 20 118 chr12 4227210 4227226 -140055263 + MIR SINE MIR 204 220 -42 1632 177 52 4 chr12 4227226 4227497 -140054992 + AluJo SINE Alu 1 284 -28 544 222 20 118 chr12 4227497 4227567 -140054922 + MIR SINE MIR 220 262 0 181 288 136 8 chr12 4228504 4228629 -140053860 + L2 LINE L2 3168 3308 -5 492 280 71 6 chr12 4228789 4228957 -140053532 + MLT1J2 LTR MaLR 34 212 -238 414 285 103 12 chr12 4229162 4229327 -140053162 - MIR3 SINE MIR -1 207 28 766 241 27 5 chr12 4230171 4230358 -140052131 - MIR SINE MIR -53 209 19 2261 61 37 31 chr12 4230468 4230762 -140051727 + AluY SINE Alu 1 296 -15 2183 110 3 3 chr12 4232723 4233015 -140049474 + AluSc SINE Alu 6 297 -12 2565 60 0 0 chr12 4233187 4233488 -140049001 - AluSc SINE Alu -8 301 1 1787 209 16 16 chr12 4234355 4234729 -140047760 + MLT1A2 LTR MaLR 1 374 0 377 236 9 28 chr12 4234902 4235008 -140047481 + L1MC5 LINE L1 7814 7917 -44 2161 99 41 0 chr12 4235175 4235467 -140047022 - AluSc SINE Alu -5 304 1 612 323 66 30 chr12 4235737 4236200 -140046289 - L2 LINE L2 -91 3222 2745 21 0 0 0 chr12 4236375 4236396 -140046093 + AT_rich Low_complexity Low_complexity 1 21 0 893 128 0 0 chr12 4236573 4236698 -140045791 + AluSg/x SINE Alu 176 300 -12 652 233 121 9 chr12 4237956 4238036 -140044453 + MER58 DNA MER1_type 1 71 -2349 2364 88 0 0 chr12 4238036 4238333 -140044156 + AluSg1 SINE Alu 1 297 -12 652 233 121 9 chr12 4238333 4238556 -140043933 + MER58 DNA MER1_type 71 2420 0 536 320 10 0 chr12 4238784 4238984 -140043505 + MIR SINE MIR 40 241 -21 291 278 53 30 chr12 4239894 4240027 -140042462 + MIR3 SINE MIR 62 197 -11 2233 103 3 7 chr12 4241221 4241523 -140040966 + AluSg SINE Alu 1 301 -9 2238 97 0 3 chr12 4241774 4242064 -140040425 - AluSq SINE Alu -15 298 10 397 213 25 0 chr12 4242095 4242175 -140040314 + L2 LINE L2 3232 3313 0 430 313 119 17 chr12 4242301 4242537 -140039952 - LTR16A LTR ERVL 0 457 196 2708 40 0 0 chr12 4242855 4243158 -140039331 - AluY SINE Alu -8 303 1 2259 110 0 10 chr12 4243164 4243474 -140039015 - AluSc SINE Alu -2 307 1 260 281 45 56 chr12 4243505 4243594 -140038895 - MLT1K LTR MaLR -411 177 90 207 204 0 0 chr12 4244273 4244317 -140038172 + GA-rich Low_complexity Low_complexity 2 45 0 2350 56 0 28 chr12 4244567 4244900 -140037589 + AluY SINE Alu 1 325 0 202 219 0 0 chr12 4244960 4245001 -140037488 - MIR3 SINE MIR -49 159 119 3875 235 57 67 chr12 4245001 4246103 -140036386 + L1MEc LINE L1 18 1130 -5266 2140 125 3 0 chr12 4246103 4246400 -140036089 + AluSq SINE Alu 4 301 -12 3875 235 57 67 chr12 4246400 4246694 -140035795 + L1MEc LINE L1 1130 1425 -4971 2367 96 0 3 chr12 4246694 4246996 -140035493 + AluY SINE Alu 1 301 -10 3875 235 57 67 chr12 4246996 4247021 -140035468 + L1MEc LINE L1 1425 1449 -4947 1703 182 21 3 chr12 4247021 4247307 -140035182 + AluJo SINE Alu 1 291 -21 3875 235 57 67 chr12 4247307 4247387 -140035102 + L1MEc LINE L1 1449 1506 -4890 709 89 0 0 chr12 4247523 4247613 -140034876 - AluY SINE Alu -220 91 2 279 222 14 14 chr12 4247614 4247686 -140034803 + L1MEc LINE L1 1510 1581 -4634 2040 144 0 10 chr12 4247686 4247999 -140034490 - AluSx SINE Alu -2 310 1 905 105 48 0 chr12 4248005 4248129 -140034360 + AluSg/x SINE Alu 162 291 -19 1819 245 103 40 chr12 4248130 4248665 -140033824 + L1MEc LINE L1 1651 2151 -4064 2056 125 3 3 chr12 4248665 4248960 -140033529 + AluSc SINE Alu 1 295 -14 1819 245 103 40 chr12 4248960 4249590 -140032899 + L1MEc LINE L1 2151 2889 -3326 637 206 103 122 chr12 4249569 4249889 -140032600 + L1M4 LINE L1 4871 5184 -1031 * 32 43 0 0 chr12 4250198 4250244 -140032245 + AT_rich Low_complexity Low_complexity 1 46 0 1587 108 0 0 chr12 4250264 4250487 -140032002 + L1MA4 LINE L1 5676 5898 -402 240 307 148 34 chr12 4250530 4250618 -140031871 + L2 LINE L2 3161 3258 -14 198 71 0 0 chr12 4250619 4250647 -140031842 + (GA)n Simple_repeat Simple_repeat 2 29 0 246 264 99 25 chr12 4251766 4251887 -140030602 - L3b LINE CR1 -161 1422 1293 545 217 159 13 chr12 4251991 4252148 -140030341 + MER5A DNA MER1_type 10 189 0 196 29 29 29 chr12 4253779 4253813 -140028676 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 209 290 14 14 chr12 4254179 4254248 -140028241 - MIR3 SINE MIR -129 79 11 351 228 205 16 chr12 4304939 4305066 -139977423 + MIR SINE MIR 56 206 -56 3465 64 0 7 chr12 4305081 4305532 -139976957 + LTR7 LTR ERV1 1 448 -2 20843 87 25 16 chr12 4305534 4308504 -139973985 + HERVH LTR ERV1 1 2995 -4718 923 129 27 0 chr12 4308483 4308630 -139973859 + HERVH LTR ERV1 3140 3290 -4423 * 980 141 0 0 chr12 4308632 4308774 -139973715 + HERVH LTR ERV1 3503 3644 -4069 * 2631 163 0 0 chr12 4308773 4309183 -139973306 + HERVH LTR ERV1 4740 5149 -2564 1360 125 18 36 chr12 4309184 4309408 -139973081 + HERVH LTR ERV1 5600 5819 -1894 * 2596 76 45 13 chr12 4309406 4309786 -139972703 + HERVH LTR ERV1 7322 7713 0 3481 56 5 7 chr12 4309786 4310235 -139972254 + LTR7 LTR ERV1 1 448 -2 2085 102 3 0 chr12 4310280 4310600 -139971889 + AluSp SINE Alu 1 321 0 249 318 61 38 chr12 4310608 4310740 -139971749 + L2 LINE L2 3172 3306 -7 2160 99 3 0 chr12 4310959 4311261 -139971228 + AluSp SINE Alu 1 303 -10 182 314 0 0 chr12 4312703 4312754 -139969735 + MIR SINE MIR 211 261 -1 * 232 277 37 94 chr12 4312745 4312905 -139969584 - MIR SINE MIR -68 140 1 264 286 71 54 chr12 4313209 4313321 -139969168 + L2 LINE L2 3191 3304 -9 * 363 236 47 38 chr12 4313298 4313404 -139969085 - L2 LINE L2 -8 3264 3158 453 298 146 20 chr12 4314696 4315052 -139967437 + L2 LINE L2 2543 2943 -371 431 341 32 0 chr12 4315157 4315283 -139967206 + L2 LINE L2 3141 3270 -2 219 36 0 0 chr12 4315574 4315602 -139966887 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2056 87 7 0 chr12 4315602 4315877 -139966612 - AluSp SINE Alu -32 281 5 2004 98 7 23 chr12 4315965 4316272 -139966217 + AluJb SINE Alu 1 302 -10 208 286 0 16 chr12 4316274 4316337 -139966152 + (TA)n Simple_repeat Simple_repeat 2 63 0 232 229 0 0 chr12 4316518 4316566 -139965923 + L2 LINE L2 3265 3312 -1 322 283 9 44 chr12 4316715 4316828 -139965661 + MIR SINE MIR 56 164 -98 395 278 149 76 chr12 4316850 4317138 -139965351 - L2 LINE L2 -73 3199 2891 221 344 0 0 chr12 4317210 4317274 -139965215 - L2 LINE L2 -581 2733 2670 226 278 81 98 chr12 4317323 4317496 -139964993 - MIR3 SINE MIR -16 192 23 35 0 0 0 chr12 4317793 4317828 -139964661 + GC_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr12 4317846 4317881 -139964608 + GC_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 4317948 4317977 -139964512 + GC_rich Low_complexity Low_complexity 1 29 0 208 258 32 32 chr12 4318474 4318536 -139963953 + MIR3 SINE MIR 101 162 -46 * 452 210 84 56 chr12 4318527 4318670 -139963819 + MIR3 SINE MIR 16 162 -46 2361 84 0 3 chr12 4319078 4319387 -139963102 + AluSq SINE Alu 1 308 -5 483 216 45 52 chr12 4319585 4319719 -139962770 + MIR3 SINE MIR 66 198 -10 468 232 146 43 chr12 4320736 4320969 -139961520 - MER112 DNA MER1_type -3 257 1 464 340 54 17 chr12 4321448 4321689 -139960800 - L3b LINE CR1 -90 1493 1244 242 346 94 24 chr12 4322187 4322314 -139960175 - MIR3 SINE MIR -67 141 6 2108 68 32 36 chr12 4322660 4322969 -139959520 - AluY SINE Alu -3 308 1 1063 275 63 25 chr12 4323328 4323692 -139958797 - L3 LINE CR1 -4 1573 1196 353 320 116 6 chr12 4323770 4323951 -139958538 - MIR SINE MIR -16 246 46 2472 38 0 0 chr12 4325608 4325900 -139956589 + AluY SINE Alu 13 304 -7 193 298 174 37 chr12 4326002 4326163 -139956326 + L3b LINE CR1 1290 1472 -111 1689 170 0 3 chr12 4326231 4326514 -139955975 + AluJb SINE Alu 1 282 -30 475 282 192 13 chr12 4327055 4327211 -139955278 + MIR3 SINE MIR 8 191 -17 246 321 24 12 chr12 4328518 4328602 -139953887 - MIR3 SINE MIR -9 199 115 242 258 62 52 chr12 4328677 4328774 -139953715 + MIR SINE MIR 21 118 -144 1882 148 6 3 chr12 4329124 4329435 -139953054 + AluJo SINE Alu 1 312 0 924 276 65 50 chr12 4329520 4329922 -139952567 - L2 LINE L2 0 3313 2906 300 292 75 33 chr12 4330349 4330469 -139952020 + L2 LINE L2 3177 3301 -12 195 254 111 0 chr12 4330707 4330770 -139951719 + MIR SINE MIR 66 135 -127 299 337 21 0 chr12 4332368 4332463 -139950026 - MIR3 SINE MIR -17 191 95 214 274 0 0 chr12 4333589 4333651 -139948838 + T-rich Low_complexity Low_complexity 1 62 0 447 254 105 72 chr12 4334390 4334483 -139948006 + MIR SINE MIR 34 122 -140 2056 115 0 0 chr12 4334483 4334771 -139947718 - AluY SINE Alu -18 293 6 447 254 105 72 chr12 4334771 4334886 -139947603 + MIR SINE MIR 122 249 -13 400 242 66 0 chr12 4334903 4335024 -139947465 + MIR SINE MIR 28 167 -61 286 288 85 65 chr12 4335109 4335262 -139947227 + MIR3 SINE MIR 48 203 -5 680 255 85 49 chr12 4335570 4335817 -139946672 + MIR SINE MIR 7 262 0 281 273 13 13 chr12 4335968 4336045 -139946444 + MER5B DNA MER1_type 93 169 -9 361 324 14 42 chr12 4336127 4336269 -139946220 + MIR3 SINE MIR 65 202 -6 628 274 13 57 chr12 4336566 4336837 -139945652 - MIR SINE MIR 0 262 3 1175 104 245 60 chr12 4337117 4337386 -139945103 + MER33 DNA MER1_type 1 319 -5 774 207 123 6 chr12 4337391 4337570 -139944919 + MIR SINE MIR 32 231 -31 195 262 65 125 chr12 4337755 4337923 -139944566 + L2 LINE L2 3102 3259 -13 205 328 151 25 chr12 4339115 4339353 -139943136 - L3b LINE CR1 -86 1497 1230 517 270 162 7 chr12 4341119 4341267 -139941222 + MER5B DNA MER1_type 6 176 -2 252 0 0 0 chr12 4344041 4344069 -139938420 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 2750 152 97 9 chr12 4344292 4344819 -139937670 - L1MD3 LINE L1 -11 7984 7412 525 205 1 19 chr12 4344819 4344930 -139937559 - MLT1F1 LTR MaLR -442 125 25 257 178 0 82 chr12 4344931 4345004 -139937485 - L1MD3 LINE L1 -895 7100 7034 1071 185 0 5 chr12 4345007 4345191 -139937298 - MLT1C LTR MaLR -1 466 284 * 1278 201 73 34 chr12 4345186 4345514 -139936975 - MLT1C LTR MaLR -120 347 7 3251 200 58 59 chr12 4345524 4345659 -139936830 - L1MD3 LINE L1 -18 6148 6869 198 0 0 0 chr12 4345659 4345681 -139936808 + (TC)n Simple_repeat Simple_repeat 1 22 0 3251 200 58 59 chr12 4345681 4346522 -139935967 - L1MD3 LINE L1 704 6870 6030 294 310 275 0 chr12 4347054 4347312 -139935177 + L2 LINE L2 2966 3294 -19 226 192 19 0 chr12 4347649 4347701 -139934788 + HAL1 LINE L1 2269 2321 -186 40 37 0 0 chr12 4347884 4347938 -139934551 + AT_rich Low_complexity Low_complexity 1 54 0 306 250 64 21 chr12 4347976 4348116 -139934373 - L1MC5 LINE L1 -99 7862 7717 315 273 0 0 chr12 4348267 4348344 -139934145 - L1MC4 LINE L1 -610 7432 7356 1224 150 134 8 chr12 4348486 4348732 -139933757 - Tigger3(Golem) DNA MER2_type 0 3029 2753 866 137 34 2 chr12 4348736 4348941 -139933548 + AluSx SINE Alu 49 302 -10 304 276 48 0 chr12 4349010 4349115 -139933374 - L1MC5 LINE L1 -895 7066 6957 3325 199 67 27 chr12 4349164 4349970 -139932519 - L1ME2 LINE L1 -9 6155 5318 * 9631 162 45 18 chr12 4349965 4352656 -139929833 - L1MC1 LINE L1 -1 6612 3995 1796 171 0 3 chr12 4352656 4352942 -139929547 - AluJb SINE Alu -27 285 1 9631 162 45 18 chr12 4352942 4356526 -139925963 - L1MC1 LINE L1 -2618 3995 5 411 213 130 0 chr12 4356506 4356614 -139925875 - L1ME2 LINE L1 -810 5336 5215 * 231 146 0 134 chr12 4356613 4356695 -139925794 - L1MC5 LINE L1 -1008 6953 6883 * 256 274 65 114 chr12 4356908 4356949 -139925540 + MARNA DNA Mariner 26 67 -519 2269 91 0 13 chr12 4356949 4357257 -139925232 - AluY SINE Alu -7 304 1 256 274 65 114 chr12 4357257 4357416 -139925073 + MARNA DNA Mariner 67 216 -370 464 298 59 43 chr12 4357438 4357693 -139924796 - MIR SINE MIR -2 260 2 249 304 51 0 chr12 4357793 4357872 -139924617 - MARNA DNA Mariner -416 170 88 2212 203 53 69 chr12 4358161 4358486 -139924003 - L1MD2 LINE L1 0 6753 6441 1892 144 7 17 chr12 4358486 4358651 -139923838 - AluJo SINE Alu -13 299 137 1957 140 10 0 chr12 4358651 4358943 -139923546 - AluSx SINE Alu -17 295 1 1892 144 7 17 chr12 4358943 4359075 -139923414 - AluJo SINE Alu -175 137 5 2212 203 53 69 chr12 4359075 4359375 -139923114 - L1MD2 LINE L1 -312 6441 6138 1486 164 19 22 chr12 4359435 4359704 -139922785 - L1MD2 LINE L1 -502 6134 5867 2057 102 19 56 chr12 4359707 4360030 -139922459 - AluY SINE Alu 0 311 1 312 194 26 17 chr12 4360045 4360131 -139922358 - L1MD2 LINE L1 0 7769 7685 1461 184 40 114 chr12 4360131 4360301 -139922188 + MLT1A2 LTR MaLR 1 182 -192 285 29 0 0 chr12 4360301 4360335 -139922154 + (TC)n Simple_repeat Simple_repeat 1 34 0 1461 184 40 114 chr12 4360335 4360379 -139922110 + MLT1A2 LTR MaLR 182 228 -146 366 23 0 0 chr12 4360379 4360422 -139922067 + (TC)n Simple_repeat Simple_repeat 1 43 0 1461 184 40 114 chr12 4360422 4360608 -139921881 + MLT1A2 LTR MaLR 228 372 -2 312 194 26 17 chr12 4360608 4361235 -139921254 - L1MD2 LINE L1 -84 7685 6243 * 6910 220 53 21 chr12 4361233 4362975 -139919514 - L1MD2 LINE L1 -743 5797 4114 8630 129 10 6 chr12 4362975 4363516 -139918973 + L1PA10 LINE L1 4102 4639 -1529 1948 131 13 35 chr12 4363516 4363807 -139918682 + AluSx SINE Alu 1 286 -26 333 0 0 0 chr12 4363807 4363844 -139918645 + (CA)n Simple_repeat Simple_repeat 2 38 0 1948 131 13 35 chr12 4363844 4363864 -139918625 + AluSx SINE Alu 286 305 -7 8630 129 10 6 chr12 4363864 4365387 -139917102 + L1PA10 LINE L1 4639 6164 -4 6910 220 53 21 chr12 4365387 4365766 -139916723 - L1MD2 LINE L1 -2426 4114 3683 2413 192 19 24 chr12 4365767 4366231 -139916258 - L1MD2 LINE L1 -6061 479 18 706 288 62 64 chr12 4367543 4367998 -139914491 - MLT1J LTR MaLR -57 454 1 308 219 133 60 chr12 4368481 4368632 -139913857 - MIR SINE MIR -62 146 11 1208 190 4 4 chr12 4368662 4368888 -139913601 - AluJb SINE Alu -6 306 81 1772 151 10 7 chr12 4368889 4369180 -139913309 - AluJo SINE Alu -20 292 1 331 270 138 46 chr12 4369202 4369354 -139913135 - MIR SINE MIR -49 213 48 325 301 136 11 chr12 4370651 4370827 -139911662 - MIR SINE MIR -27 235 38 204 261 0 0 chr12 4371895 4371941 -139910548 - L3 LINE CR1 -9 1568 1523 276 297 55 16 chr12 4372119 4372247 -139910242 - MIR SINE MIR -98 164 32 33 0 0 0 chr12 4373612 4373645 -139908844 + AT_rich Low_complexity Low_complexity 1 33 0 731 117 0 0 chr12 4373734 4373837 -139908652 + AluY SINE Alu 205 307 -4 2152 167 30 3 chr12 4373942 4374308 -139908181 + L1MB5 LINE L1 5799 6174 0 275 75 57 75 chr12 4374325 4374378 -139908111 + L1MC1 LINE L1 6281 6332 -1 291 301 135 12 chr12 4374571 4374675 -139907814 + L2 LINE L2 3071 3161 -111 2373 104 3 0 chr12 4374675 4374983 -139907506 - AluSp SINE Alu -4 309 1 291 301 135 12 chr12 4374983 4375041 -139907448 + L2 LINE L2 3161 3253 -19 265 187 13 80 chr12 4375051 4375126 -139907363 + MIR SINE MIR 56 125 -83 286 261 152 0 chr12 4375520 4375658 -139906831 - MIR SINE MIR -62 200 42 248 331 76 21 chr12 4375675 4375820 -139906669 + L3b LINE CR1 1406 1558 -25 391 264 270 6 chr12 4376424 4376587 -139905902 - MIR SINE MIR -42 220 15 1132 236 105 57 chr12 4376685 4377369 -139905120 - L1MC5 LINE L1 -36 7925 7260 363 293 30 0 chr12 4378054 4378153 -139904336 - MIR3 SINE MIR -25 183 82 1038 154 0 0 chr12 4378155 4378317 -139904172 + FRAM SINE Alu 2 163 -13 223 302 35 78 chr12 4378809 4378925 -139903564 + L2 LINE L2 3203 3313 0 428 247 69 70 chr12 4379065 4379314 -139903175 - Charlie2a DNA MER1_type -32 2830 2582 1861 176 3 3 chr12 4379314 4379621 -139902868 - AluJb SINE Alu -5 307 1 428 247 69 70 chr12 4379621 4379870 -139902619 - Charlie2a DNA MER1_type -280 2582 2274 7443 220 56 69 chr12 4379877 4381778 -139900711 + L1MD1 LINE L1 2713 4638 -1591 1281 190 138 30 chr12 4381778 4382047 -139900442 + AluJo SINE Alu 5 302 0 7443 220 56 69 chr12 4382047 4382058 -139900431 + L1MD1 LINE L1 4638 4648 -1581 2549 65 0 0 chr12 4382058 4382365 -139900124 + AluY SINE Alu 1 307 -4 7443 220 56 69 chr12 4382365 4382722 -139899767 + L1MD1 LINE L1 4648 5008 -1221 381 43 0 0 chr12 4382722 4382769 -139899720 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2228 89 3 0 chr12 4382769 4383051 -139899438 - AluSp SINE Alu -30 283 1 7443 220 56 69 chr12 4383051 4383230 -139899259 + L1MD1 LINE L1 5007 5187 -1042 2223 116 0 3 chr12 4383230 4383540 -139898949 + AluSc SINE Alu 1 309 0 7443 220 56 69 chr12 4383540 4383908 -139898581 + L1MD1 LINE L1 5187 5486 -743 5047 196 25 63 chr12 4386327 4387563 -139894926 + L1MC2 LINE L1 4084 5365 -979 2078 80 29 0 chr12 4387563 4387861 -139894628 + AluY SINE Alu 1 306 0 5047 196 25 63 chr12 4387861 4388120 -139894369 + L1MC2 LINE L1 5365 5632 -712 825 142 0 8 chr12 4388120 4388254 -139894235 - L1PB2 LINE L1 -4 6147 6015 5047 196 25 63 chr12 4388254 4389102 -139893387 + L1MC2 LINE L1 5632 6343 -1 2187 86 0 4 chr12 4389127 4389405 -139893084 - AluSg SINE Alu -20 290 14 2764 225 60 3 chr12 4389426 4390097 -139892392 + L1MC3 LINE L1 7075 7783 -2 3255 172 17 32 chr12 4390106 4390739 -139891750 + L1MD1 LINE L1 5475 6098 -144 253 204 0 0 chr12 4390739 4390788 -139891701 + AluJ/monomer SINE Alu 257 305 -3 1945 73 4 4 chr12 4390802 4391050 -139891439 - AluSp SINE Alu -17 296 49 2930 199 56 38 chr12 4391052 4391076 -139891413 - Charlie2a DNA MER1_type -610 2252 2230 2241 75 0 0 chr12 4391076 4391382 -139891107 - AluY SINE Alu 0 306 1 2930 199 56 38 chr12 4391382 4392086 -139890403 - Charlie2a DNA MER1_type -632 2230 1506 2279 118 0 0 chr12 4392086 4392390 -139890099 - AluSc SINE Alu -5 304 1 2930 199 56 38 chr12 4392390 4392427 -139890062 - Charlie2a DNA MER1_type -1356 1506 1471 410 53 18 0 chr12 4392483 4392540 -139889949 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1583 268 116 38 chr12 4392561 4393173 -139889316 - Charlie2b DNA MER1_type -2117 665 6 183 80 0 0 chr12 4394453 4394478 -139888011 + (A)n Simple_repeat Simple_repeat 1 25 0 2047 135 0 3 chr12 4394483 4394780 -139887709 + AluJo SINE Alu 3 298 -14 429 311 62 6 chr12 4395338 4395499 -139886990 - MIR SINE MIR -1 261 92 298 299 146 14 chr12 4395531 4395675 -139886814 + L3 LINE CR1 1395 1557 -20 191 245 0 20 chr12 4395695 4395744 -139886745 - L2 LINE L2 -3 3269 3222 209 256 0 13 chr12 4395764 4395842 -139886647 + GA-rich Low_complexity Low_complexity 3 79 0 27 29 0 0 chr12 4395857 4395891 -139886598 + AT_rich Low_complexity Low_complexity 1 34 0 726 179 0 83 chr12 4396049 4396194 -139886295 - FLAM_C SINE Alu 0 133 1 258 278 179 46 chr12 4396783 4396883 -139885606 - L2 LINE L2 -231 3041 2956 1841 140 3 42 chr12 4396883 4397190 -139885299 + AluJo SINE Alu 2 296 -16 258 278 179 46 chr12 4397190 4397438 -139885051 - L2 LINE L2 -316 2956 2636 1749 160 91 3 chr12 4398467 4398798 -139883691 + MER46B DNA MER2_type 1 235 -1 183 200 0 0 chr12 4398843 4398873 -139883616 - L2 LINE L2 -86 3186 3157 603 247 89 32 chr12 4399026 4399273 -139883216 + L2 LINE L2 3050 3310 -3 332 310 70 10 chr12 4399295 4399395 -139883094 + L2 LINE L2 3116 3221 -51 309 51 0 0 chr12 4399418 4399457 -139883032 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 235 274 0 0 chr12 4399487 4399538 -139882951 - L2 LINE L2 -12 3260 3210 273 289 20 94 chr12 4400103 4400252 -139882237 - MIR3 SINE MIR -3 205 68 421 234 52 16 chr12 4400474 4400619 -139881870 + L1ME3 LINE L1 5987 6132 -38 1225 35 0 0 chr12 4400709 4400850 -139881639 + AluY SINE Alu 165 305 -6 2552 62 0 3 chr12 4400868 4401174 -139881315 + AluSc SINE Alu 1 305 -4 276 133 44 0 chr12 4401178 4401223 -139881266 - MIR SINE MIR -96 166 120 213 232 74 42 chr12 4401238 4401333 -139881156 - MIR SINE MIR -4 258 161 861 106 50 7 chr12 4401370 4401511 -139880978 - L1MB3 LINE L1 -3 6180 6034 368 299 0 0 chr12 4401513 4401610 -139880879 + MIR SINE MIR 49 145 -117 3301 138 2 8 chr12 4401638 4402118 -139880371 + MER1A DNA MER1_type 53 529 0 381 375 40 0 chr12 4402815 4402991 -139879498 + MIR SINE MIR 49 231 -31 270 273 39 26 chr12 4404087 4404164 -139878325 - MIR SINE MIR -98 164 87 189 0 0 0 chr12 4404848 4404869 -139877620 + (TG)n Simple_repeat Simple_repeat 1 21 0 249 119 0 0 chr12 4405067 4405109 -139877380 + (TC)n Simple_repeat Simple_repeat 1 42 0 225 128 0 0 chr12 4405108 4405155 -139877334 + (CA)n Simple_repeat Simple_repeat 1 47 0 * 218 290 70 50 chr12 4405428 4405528 -139876961 + MIR SINE MIR 129 230 -32 279 193 35 0 chr12 4405539 4405596 -139876893 - L3 LINE CR1 -119 1458 1400 287 167 0 0 chr12 4406150 4406198 -139876291 - MIR SINE MIR -108 154 107 656 289 128 5 chr12 4407454 4407672 -139874817 - MIR SINE MIR -1 261 17 209 222 0 19 chr12 4407764 4407818 -139874671 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 502 295 47 37 chr12 4408544 4408734 -139873755 + MIR SINE MIR 51 242 -20 2335 79 0 0 chr12 4408868 4409172 -139873317 - AluSq SINE Alu -5 308 5 2355 51 3 26 chr12 4409184 4409495 -139872994 - AluY SINE Alu -7 304 1 198 0 0 0 chr12 4409661 4409683 -139872806 + (CA)n Simple_repeat Simple_repeat 1 22 0 394 275 84 28 chr12 4410518 4410660 -139871829 - MIR SINE MIR -93 169 20 2337 48 10 0 chr12 4410825 4411117 -139871372 - AluSg SINE Alu -15 295 1 2152 115 0 0 chr12 4411541 4411853 -139870636 + AluSq SINE Alu 1 312 -1 2899 207 12 14 chr12 4411869 4412581 -139869908 - L1M LINE L1 -737 5429 4720 3939 292 66 52 chr12 4412585 4412877 -139869612 - L1ME3A LINE L1 -232 6174 5888 2450 47 0 3 chr12 4412877 4413174 -139869315 + AluY SINE Alu 1 296 -15 3939 292 66 52 chr12 4413174 4414518 -139867971 - L1ME3A LINE L1 -518 5888 4564 1773 179 0 0 chr12 4414518 4414814 -139867675 - AluJo SINE Alu -16 296 1 3939 292 66 52 chr12 4414814 4415035 -139867454 - L1ME3A LINE L1 -1842 4564 4348 234 62 0 0 chr12 4415035 4415067 -139867422 + (TG)n Simple_repeat Simple_repeat 1 32 0 3939 292 66 52 chr12 4415067 4415585 -139866904 - L1ME3A LINE L1 -2058 4348 3839 2117 103 3 0 chr12 4415585 4415901 -139866588 - AluSp SINE Alu 0 313 1 3939 292 66 52 chr12 4415901 4416117 -139866372 - L1ME3A LINE L1 -2567 3839 3627 1934 205 55 26 chr12 4416117 4416480 -139866009 - MLT1C LTR MaLR 0 467 116 233 0 62 0 chr12 4416480 4416512 -139865977 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1989 111 0 11 chr12 4416515 4416795 -139865694 - AluSx SINE Alu -31 281 5 1934 205 55 26 chr12 4416795 4416881 -139865608 - MLT1C LTR MaLR -352 115 1 3939 292 66 52 chr12 4416881 4417890 -139864599 - L1ME3A LINE L1 -2779 3627 2518 1461 187 33 0 chr12 4417890 4418190 -139864299 - AluJb SINE Alu -2 310 1 3939 292 66 52 chr12 4418190 4418239 -139864250 - L1ME3A LINE L1 -3888 2518 2471 231 205 60 24 chr12 4418323 4418406 -139864083 - L1ME3A LINE L1 -3967 2417 2332 318 285 44 3 chr12 4418739 4418886 -139863603 - L1ME3A LINE L1 -4641 1922 1620 677 199 29 15 chr12 4418898 4419034 -139863455 - LTR40a LTR ERVL -379 140 3 187 313 31 0 chr12 4419111 4419175 -139863314 - MIR SINE MIR -124 138 73 664 230 23 40 chr12 4419785 4419959 -139862530 - MER5A DNA MER1_type -5 184 14 520 320 11 17 chr12 4421872 4422053 -139860436 - MIR3 SINE MIR -10 198 19 2121 75 3 3 chr12 4422068 4422381 -139860108 - AluY SINE Alu 0 313 1 183 80 0 0 chr12 4422662 4422687 -139859802 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 293 68 23 0 chr12 4422931 4422975 -139859514 + (TG)n Simple_repeat Simple_repeat 2 46 0 254 296 71 31 chr12 4423724 4423822 -139858667 - MIR SINE MIR -113 149 48 182 231 0 0 chr12 4423906 4423945 -139858544 - L2 LINE L2 -97 3175 3137 187 307 53 40 chr12 4424037 4424112 -139858377 - MIR SINE MIR -101 161 86 1694 131 78 11 chr12 4424352 4424634 -139857855 + AluJb SINE Alu 1 301 -11 7498 48 0 0 chr12 4424929 4425830 -139856659 - L1PA5 LINE L1 0 6154 5254 236 319 99 7 chr12 4425851 4425992 -139856497 + L3 LINE CR1 1418 1571 -6 250 238 88 62 chr12 4426293 4426373 -139856116 + L2 LINE L2 3214 3295 -18 1376 194 3 31 chr12 4426383 4426672 -139855817 + AluJo SINE Alu 1 281 -31 325 239 37 30 chr12 4426985 4427119 -139855370 + CT-rich Low_complexity Low_complexity 2 136 0 282 277 107 13 chr12 4427780 4427909 -139854580 - L3b LINE CR1 -6 1571 1437 359 235 0 0 chr12 4428148 4428216 -139854273 + MIR SINE MIR 194 261 -1 417 250 45 30 chr12 4428478 4428610 -139853879 + MER94 DNA DNA 1 134 0 1673 169 3 3 chr12 4428688 4428972 -139853517 - AluJb SINE Alu -14 298 15 250 327 37 68 chr12 4429053 4429215 -139853274 + MER5A DNA MER1_type 33 189 0 214 246 77 15 chr12 4429290 4429355 -139853134 - MIR SINE MIR -93 115 47 2134 109 3 3 chr12 4429920 4430232 -139852257 + AluSx SINE Alu 1 312 0 287 194 0 16 chr12 4430530 4430592 -139851897 - MIR SINE MIR -139 123 63 300 294 33 11 chr12 4430778 4430870 -139851619 - MIR3 SINE MIR -4 204 111 1189 238 188 22 chr12 4430898 4431435 -139851054 + Charlie2b DNA MER1_type 44 669 -2113 1198 241 126 18 chr12 4431521 4431741 -139850748 + L2 LINE L2 597 792 -2522 2028 91 24 7 chr12 4431741 4432028 -139850461 - AluSg SINE Alu -18 292 1 1198 241 126 18 chr12 4432028 4432260 -139850229 + L2 LINE L2 792 1098 -2216 420 281 125 0 chr12 4433163 4433323 -139849166 + MIR SINE MIR 49 228 -34 242 182 81 61 chr12 4433466 4433565 -139848924 + MIR SINE MIR 42 142 -66 295 278 160 36 chr12 4433941 4434121 -139848368 + MIR3 SINE MIR 5 196 -62 495 260 77 46 chr12 4434245 4434441 -139848048 - MIR SINE MIR -1 261 60 694 161 161 21 chr12 4434610 4434753 -139847736 - FRAM SINE Alu -12 164 2 245 355 21 0 chr12 4434990 4435083 -139847406 - MIR3 SINE MIR -16 192 98 2273 39 7 7 chr12 4435927 4436260 -139846229 - AluY SINE Alu 0 333 1 6573 84 14 2 chr12 4436267 4436935 -139845554 - L1PA14 LINE L1 0 6161 5478 2221 83 7 10 chr12 4436935 4437237 -139845252 - AluSp SINE Alu -12 301 1 6573 84 14 2 chr12 4437237 4437465 -139845024 - L1PA14 LINE L1 -683 5478 5254 2236 91 0 3 chr12 4437698 4437995 -139844494 + AluSq SINE Alu 1 296 -17 401 241 9 0 chr12 4438005 4438117 -139844372 + CT-rich Low_complexity Low_complexity 3 115 0 187 182 0 0 chr12 4438123 4438156 -139844333 - L2 LINE L2 -13 3300 3268 238 257 27 14 chr12 4438865 4438939 -139843550 + L1ME LINE L1 5845 5919 -202 2120 112 0 0 chr12 4439417 4439720 -139842769 - AluSx SINE Alu -9 303 1 316 214 36 116 chr12 4440429 4440541 -139841948 + MIR SINE MIR 84 186 -76 5201 158 56 27 chr12 4440541 4440593 -139841896 + L1MC2 LINE L1 5293 5342 -1002 954 107 15 0 chr12 4440593 4440724 -139841765 + FLAM_C SINE Alu 1 133 0 5201 158 56 27 chr12 4440724 4441084 -139841405 + L1MC2 LINE L1 5342 5690 -654 1861 123 18 0 chr12 4441084 4441388 -139841101 - AluSx SINE Alu 0 309 1 5201 158 56 27 chr12 4441388 4441995 -139840494 + L1MC2 LINE L1 5690 6343 -1 300 186 14 86 chr12 4442007 4442077 -139840412 + MIR3 SINE MIR 91 155 -53 329 157 0 0 chr12 4442084 4442135 -139840354 - MER3 DNA MER1_type -127 82 32 311 248 44 35 chr12 4442135 4442159 -139840330 - L1MC4 LINE L1 -447 7595 7573 2135 102 0 10 chr12 4442159 4442463 -139840026 - AluSc SINE Alu -8 301 1 311 248 44 35 chr12 4442463 4442551 -139839938 - L1MC4 LINE L1 -469 7573 7482 2324 81 0 0 chr12 4444241 4444538 -139837951 + AluSp SINE Alu 1 297 -16 1906 117 31 3 chr12 4444550 4444841 -139837648 + AluSq SINE Alu 1 299 -14 207 0 0 0 chr12 4444979 4445002 -139837487 + (T)n Simple_repeat Simple_repeat 1 23 0 861 143 75 7 chr12 4445630 4445777 -139836712 - FRAM SINE Alu -19 157 1 988 196 103 18 chr12 4445777 4446006 -139836483 + L1ME3A LINE L1 5863 6122 -48 2203 107 0 3 chr12 4446006 4446316 -139836173 + AluSc SINE Alu 1 309 0 988 196 103 18 chr12 4446316 4446367 -139836122 + L1ME3A LINE L1 6122 6167 -3 729 136 8 8 chr12 4446373 4446491 -139835998 + FLAM_C SINE Alu 17 134 -9 1203 224 98 67 chr12 4446723 4447173 -139835316 + MLT1C LTR MaLR 1 464 -3 2128 102 3 0 chr12 4447705 4448039 -139834450 - AluSx SINE Alu 0 335 1 1035 221 78 11 chr12 4448501 4448782 -139833707 + Charlie2b DNA MER1_type 370 669 -2113 2340 178 174 47 chr12 4448816 4449129 -139833360 + Charlie2a DNA MER1_type 1472 1744 -1118 2197 89 3 0 chr12 4449129 4449421 -139833068 - AluSg SINE Alu -17 293 1 2340 178 174 47 chr12 4449421 4449725 -139832764 + Charlie2a DNA MER1_type 1744 2008 -854 2451 47 3 0 chr12 4449725 4450024 -139832465 + AluY SINE Alu 1 300 -11 2340 178 174 47 chr12 4450024 4450234 -139832255 + Charlie2a DNA MER1_type 2008 2190 -672 1502 126 29 8 chr12 4450234 4450473 -139832016 - AluJo SINE Alu -9 303 60 2340 178 174 47 chr12 4450473 4450745 -139831744 + Charlie2a DNA MER1_type 2190 2778 -84 204 40 0 0 chr12 4451076 4451101 -139831388 + (T)n Simple_repeat Simple_repeat 1 25 0 207 270 190 35 chr12 4452656 4452830 -139829659 + L2 LINE L2 2984 3184 -129 2187 125 0 0 chr12 4453075 4453370 -139829119 - AluSx SINE Alu -17 295 1 311 189 42 11 chr12 4453377 4453472 -139829017 + (TA)n Simple_repeat Simple_repeat 1 98 0 190 343 67 0 chr12 4453488 4453593 -139828896 + L2 LINE L2 3136 3247 -25 404 282 0 9 chr12 4453818 4453928 -139828561 - L1M4 LINE L1 -3575 2571 2463 240 294 42 25 chr12 4454598 4454717 -139827772 - L2 LINE L2 -210 3062 2942 705 227 167 32 chr12 4454770 4455021 -139827468 - Charlie8 DNA MER1_type -2132 285 1 1367 330 104 28 chr12 4455128 4455624 -139826865 - L2 LINE L2 -556 2758 2301 2137 139 0 3 chr12 4455624 4455926 -139826563 + AluSx SINE Alu 1 301 -11 1367 330 104 28 chr12 4455926 4456574 -139825915 - L2 LINE L2 -1013 2301 1527 223 241 20 0 chr12 4456881 4456946 -139825543 + MIR SINE MIR 17 81 -133 1862 123 0 7 chr12 4457002 4457271 -139825218 + AluJb SINE Alu 39 305 -7 2334 136 8 0 chr12 4458105 4458453 -139824036 - L1PB4 LINE L1 -13 6143 5790 270 0 0 0 chr12 4458453 4458483 -139824006 + (TG)n Simple_repeat Simple_repeat 2 31 0 2334 136 8 0 chr12 4458483 4458501 -139823988 - L1PB4 LINE L1 -366 5790 5774 43 88 0 0 chr12 4458508 4458621 -139823868 + AT_rich Low_complexity Low_complexity 1 113 0 24 32 0 0 chr12 4458676 4458707 -139823782 + AT_rich Low_complexity Low_complexity 1 31 0 477 88 32 40 chr12 4458788 4458913 -139823576 + (TA)n Simple_repeat Simple_repeat 1 124 0 252 269 14 21 chr12 4458916 4459057 -139823432 + (TTA)n Simple_repeat Simple_repeat 3 142 0 348 133 0 0 chr12 4459088 4459148 -139823341 + (TA)n Simple_repeat Simple_repeat 1 60 0 713 145 17 29 chr12 4459161 4459312 -139823177 - L1PB4 LINE L1 -375 5781 5645 1579 243 207 16 chr12 4459582 4460075 -139822414 - MLT1E LTR MaLR -6 587 1 390 276 92 15 chr12 4460198 4460394 -139822095 - MIR SINE MIR -28 234 24 418 273 0 18 chr12 4460540 4460650 -139821839 - MLT1J LTR MaLR -85 426 319 2228 172 46 0 chr12 4460901 4461314 -139821175 + MSTB1 LTR MaLR 1 432 0 405 260 87 119 chr12 4461364 4461464 -139821025 - HAL1b LINE L1 -461 887 785 2364 88 0 7 chr12 4461464 4461760 -139820729 - AluSp SINE Alu -19 294 1 405 260 87 119 chr12 4461760 4461897 -139820592 - HAL1b LINE L1 -563 785 645 336 192 26 0 chr12 4461897 4461975 -139820514 + MER116 DNA Mariner 1 80 0 405 260 87 119 chr12 4461975 4462382 -139820107 - HAL1b LINE L1 -703 645 263 2155 80 0 0 chr12 4462398 4462688 -139819801 + AluSg1 SINE Alu 18 307 0 349 43 43 29 chr12 4462891 4462961 -139819528 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 390 247 51 51 chr12 4463050 4463228 -139819261 + L1MC4a LINE L1 5741 5918 -1890 1660 147 110 7 chr12 4463386 4463659 -139818830 - AluSx SINE Alu -11 301 1 1794 281 90 68 chr12 4463781 4464274 -139818215 + L1MEc LINE L1 35 516 -5880 2141 117 0 43 chr12 4464274 4464600 -139817889 + AluSx SINE Alu 1 312 0 2360 107 0 0 chr12 4464610 4464918 -139817571 + AluSx SINE Alu 1 308 -4 1794 281 90 68 chr12 4464918 4465818 -139816671 + L1MEc LINE L1 524 1470 -4926 3170 200 116 96 chr12 4465937 4466205 -139816284 + L1MEc LINE L1 2574 2835 -3380 225 125 0 0 chr12 4466205 4466237 -139816252 - Alu SINE Alu -224 78 47 3170 200 116 96 chr12 4466237 4466322 -139816167 + L1MEc LINE L1 2835 2917 -3298 7971 19 0 0 chr12 4466322 4467361 -139815128 - L1PA3 LINE L1 0 6155 5117 3170 200 116 96 chr12 4467361 4467902 -139814587 + L1MEc LINE L1 2917 3446 -2769 2167 102 0 7 chr12 4467902 4468187 -139814302 - AluSg SINE Alu -27 283 1 3170 200 116 96 chr12 4468187 4468219 -139814270 + L1MEc LINE L1 3446 3476 -2739 2326 45 52 3 chr12 4468219 4468508 -139813981 - AluY SINE Alu -8 303 1 3170 200 116 96 chr12 4468508 4468932 -139813557 + L1MEc LINE L1 3476 3986 -2229 337 314 20 65 chr12 4468975 4469220 -139813269 + L1M4 LINE L1 3702 3935 -2211 492 269 138 39 chr12 4469284 4469566 -139812923 - L2 LINE L2 -4 3309 3000 2061 238 41 23 chr12 4469741 4470393 -139812096 + HAL1 LINE L1 1076 1739 -768 767 307 121 18 chr12 4470409 4470862 -139811627 + MLT1J LTR MaLR 11 510 -1 1891 256 69 46 chr12 4470867 4471606 -139810883 + HAL1 LINE L1 1752 2507 0 1313 274 146 35 chr12 4471694 4472078 -139810411 + L1MC4a LINE L1 3797 4137 -1984 683 297 29 0 chr12 4472078 4472287 -139810202 - MER58C DNA MER1_type 0 215 1 1313 274 146 35 chr12 4472287 4473448 -139809041 + L1MC4a LINE L1 4137 5168 -953 2327 93 3 7 chr12 4473448 4473749 -139808740 + AluSq SINE Alu 1 300 -13 1313 274 146 35 chr12 4473749 4473938 -139808551 + L1MC4a LINE L1 5168 5335 -786 1783 171 3 0 chr12 4473938 4474224 -139808265 - AluJb SINE Alu -21 291 5 1313 274 146 35 chr12 4474224 4474404 -139808085 + L1MC4a LINE L1 5335 5951 -170 229 191 58 159 chr12 4474536 4474642 -139807847 - L1ME4a LINE L1 -35 6086 5971 210 43 22 43 chr12 4474642 4474688 -139807801 + (TTA)n Simple_repeat Simple_repeat 2 46 0 229 191 58 159 chr12 4474688 4474770 -139807719 - L1ME4a LINE L1 -150 5971 5928 1756 135 6 79 chr12 4474770 4475088 -139807401 + AluJb SINE Alu 1 295 -17 229 191 58 159 chr12 4475088 4475155 -139807334 - L1ME4a LINE L1 -193 5928 5856 197 280 130 30 chr12 4475564 4475664 -139806825 - L2 LINE L2 -4 3268 3159 533 348 8 37 chr12 4476820 4477064 -139805425 - MIR SINE MIR -6 256 20 2111 196 19 21 chr12 4477088 4477553 -139804936 - MLT1C LTR MaLR -3 464 1 205 176 0 0 chr12 4477572 4477606 -139804883 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 304 306 96 25 chr12 4477817 4477974 -139804515 - MIR SINE MIR -60 202 35 1744 166 32 3 chr12 4478453 4478736 -139803753 - AluJo SINE Alu -19 293 3 421 293 16 69 chr12 4479098 4479226 -139803263 - MER5B DNA MER1_type 0 178 62 1855 162 0 23 chr12 4479226 4479528 -139802961 - AluJo SINE Alu -13 299 5 421 293 16 69 chr12 4479528 4479587 -139802902 - MER5B DNA MER1_type -116 62 1 1752 142 28 34 chr12 4479893 4480216 -139802273 + L1MC2 LINE L1 6024 6344 0 309 324 54 0 chr12 4480849 4480997 -139801492 - MIR SINE MIR -13 249 94 2314 79 10 0 chr12 4481544 4481836 -139800653 + AluSp SINE Alu 6 300 -13 316 300 49 60 chr12 4482075 4482342 -139800147 - L2 LINE L2 -1 3312 3049 544 307 78 13 chr12 4482489 4482520 -139799969 + MIR SINE MIR 4 32 -230 2409 86 0 3 chr12 4482520 4482822 -139799667 + AluSc SINE Alu 1 301 -8 544 307 78 13 chr12 4482822 4483021 -139799468 + MIR SINE MIR 32 249 -13 1258 132 16 5 chr12 4483879 4484069 -139798420 + AluJb SINE Alu 114 305 -7 375 230 52 37 chr12 4484103 4484238 -139798251 - MLT1J LTR MaLR -374 137 1 483 261 14 35 chr12 4484331 4484473 -139798016 + L2 LINE L2 3134 3272 0 329 288 44 12 chr12 4484969 4485129 -139797360 - MIR3 SINE MIR -8 200 36 254 259 40 52 chr12 4485801 4485902 -139796587 - MIR SINE MIR -101 107 8 275 290 103 13 chr12 4488472 4488627 -139793862 + L3b LINE CR1 1284 1452 -131 364 264 61 74 chr12 4489128 4489276 -139793213 - MIR SINE MIR -49 213 68 574 294 135 37 chr12 4489541 4490021 -139792468 + L2 LINE L2 2782 3312 -1 456 253 95 28 chr12 4491197 4491342 -139791147 - MIR SINE MIR -65 143 36 755 325 15 18 chr12 4491528 4491925 -139790564 - L2 LINE L2 0 3313 2918 309 208 202 22 chr12 4492028 4492206 -139790283 + L1ME2 LINE L1 5944 6153 -11 2122 104 4 0 chr12 4492208 4492509 -139789980 - AluSx SINE Alu 0 302 1 207 362 9 29 chr12 4492704 4492809 -139789680 + MIR SINE MIR 80 182 -80 2256 215 47 103 chr12 4493385 4494264 -139788225 + MER97a DNA MER1_type? 59 887 -7 2437 107 0 0 chr12 4494613 4494923 -139787566 + AluSx SINE Alu 1 310 -2 417 101 0 0 chr12 4494953 4495045 -139787444 + Alu SINE Alu 243 334 0 271 250 16 0 chr12 4496273 4496337 -139786152 - MIR SINE MIR -112 150 86 240 293 0 13 chr12 4496551 4496626 -139785863 - MIR SINE MIR -104 158 85 482 305 122 15 chr12 4496935 4497249 -139785240 - L1MC/D LINE L1 -333 5788 5443 2212 101 0 7 chr12 4497262 4497559 -139784930 + AluSx SINE Alu 6 300 -12 2260 119 0 0 chr12 4497576 4497878 -139784611 + AluSx SINE Alu 1 302 -10 2314 97 3 0 chr12 4498833 4499131 -139783358 - AluSx SINE Alu -13 299 1 879 232 0 0 chr12 4499708 4499872 -139782617 - FRAM SINE Alu -2 164 1 8818 194 48 12 chr12 4500417 4502488 -139780001 + L1M2 LINE L1 157 2319 -4530 330 203 0 0 chr12 4502835 4502894 -139779595 + MER2 DNA MER2_type 287 345 0 404 300 36 7 chr12 4502902 4503042 -139779447 + MIR3 SINE MIR 54 197 -11 6930 52 36 0 chr12 4505851 4506941 -139775548 - L1P2 LINE L1 -642 5512 4381 337 295 93 16 chr12 4507442 4507571 -139774918 - L2 LINE L2 0 3272 3134 375 230 52 37 chr12 4507663 4507798 -139774691 + MLT1J LTR MaLR 1 137 -374 1247 132 16 5 chr12 4507832 4508022 -139774467 - AluJb SINE Alu -7 305 114 183 162 0 0 chr12 4508803 4508840 -139773649 + (TTA)n Simple_repeat Simple_repeat 1 37 0 266 184 0 174 chr12 4511337 4511446 -139771043 - MIR SINE MIR -117 145 56 637 238 97 36 chr12 4511852 4512100 -139770389 + AluJo SINE Alu 3 265 -47 8212 97 32 2 chr12 4512383 4513646 -139768843 - L1P LINE L1 -3385 2761 1460 436 318 71 38 chr12 4513785 4514052 -139768437 - L2 LINE L2 -805 2509 2234 1410 273 66 29 chr12 4514060 4514610 -139767879 + MLT1L LTR MaLR 1 570 -18 264 122 0 0 chr12 4516853 4516894 -139765595 + (CA)n Simple_repeat Simple_repeat 2 42 0 2187 98 3 10 chr12 4517071 4517376 -139765113 - AluSc SINE Alu -6 303 1 574 120 11 0 chr12 4517377 4517469 -139765020 - L1MC3 LINE L1 -99 7686 7594 203 170 21 0 chr12 4518484 4518531 -139763958 + CT-rich Low_complexity Low_complexity 2 49 0 2456 56 13 0 chr12 4520796 4521099 -139761390 + AluY SINE Alu 1 307 -4 305 241 126 0 chr12 4521118 4521205 -139761284 - LTR10A LTR ERV1 -511 98 1 823 202 255 47 chr12 4521234 4521615 -139760874 - MER31B LTR ERV1 0 466 7 243 0 0 0 chr12 4522494 4522521 -139759968 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 207 125 0 0 chr12 4523920 4523960 -139758529 + (A)n Simple_repeat Simple_repeat 1 40 0 27 29 0 0 chr12 4524064 4524098 -139758391 + AT_rich Low_complexity Low_complexity 1 34 0 207 186 0 0 chr12 4524178 4524221 -139758268 + A-rich Low_complexity Low_complexity 2 44 0 242 188 29 58 chr12 4524899 4524968 -139757521 + L2 LINE L2 3229 3295 -18 21 0 0 0 chr12 4525444 4525465 -139757024 + AT_rich Low_complexity Low_complexity 1 21 0 2029 115 7 14 chr12 4526305 4526600 -139755889 - AluSx SINE Alu -19 293 1 2149 94 10 13 chr12 4527365 4527673 -139754816 + AluSp SINE Alu 6 312 -1 1212 189 50 12 chr12 4528496 4528755 -139753734 - MLT1A1 LTR MaLR -93 272 4 255 278 101 35 chr12 4529037 4529235 -139753254 - L1MEc LINE L1 -4815 1495 1285 505 300 101 51 chr12 4529253 4529300 -139753189 - L1MEc LINE L1 -4917 1202 1159 2235 118 3 0 chr12 4529300 4529606 -139752883 - AluSq SINE Alu -6 307 1 505 300 101 51 chr12 4529606 4529647 -139752842 - L1MEc LINE L1 -4960 1159 1121 1544 199 82 15 chr12 4529647 4529989 -139752500 + MLT1A1 LTR MaLR 1 365 0 505 300 101 51 chr12 4529989 4530486 -139752003 - L1MEc LINE L1 -4998 1121 587 513 32 0 0 chr12 4530716 4530779 -139751710 + (CA)n Simple_repeat Simple_repeat 1 63 0 1936 124 29 0 chr12 4531434 4531728 -139750761 - AluSx SINE Alu 0 303 2 39 38 0 0 chr12 4531860 4531913 -139750576 + AT_rich Low_complexity Low_complexity 1 53 0 2073 116 17 10 chr12 4532122 4532424 -139750065 + AluSx SINE Alu 5 308 -4 678 302 49 40 chr12 4532495 4532823 -139749666 + L1MEc LINE L1 398 728 -5993 12468 170 27 20 chr12 4532832 4532999 -139749490 + L1MA2 LINE L1 2915 3079 -3067 1832 123 11 0 chr12 4532999 4533268 -139749221 + AluSq SINE Alu 35 306 -7 12468 170 27 20 chr12 4533268 4535546 -139746943 + L1MA2 LINE L1 3079 5379 -767 737 62 0 0 chr12 4535548 4535644 -139746845 + L1PA5 LINE L1 1 96 -6050 11179 44 5 0 chr12 4535644 4538989 -139743500 + L1PA5 LINE L1 623 6134 -20 11179 38 6 0 chr12 4538989 4541030 -139741459 + L1PA5 LINE L1 4094 6147 -7 11179 44 5 0 chr12 4541030 4541045 -139741444 + L1PA5 LINE L1 6134 6147 -7 6285 112 19 7 chr12 4541044 4541971 -139740518 + L1MA2 LINE L1 5366 6304 0 * 2022 147 0 0 chr12 4542123 4542415 -139740074 + AluJb SINE Alu 1 292 -20 276 260 61 41 chr12 4542488 4542684 -139739805 + L1MEc LINE L1 1578 1777 -4944 261 278 48 8 chr12 4542734 4542854 -139739635 + L1MEc LINE L1 1844 1950 -4590 366 265 97 17 chr12 4543078 4543369 -139739120 + L1MEc LINE L1 805 1050 -5165 835 236 5 26 chr12 4543371 4543566 -139738923 - MER58A DNA MER1_type -2 222 32 2390 81 0 7 chr12 4543688 4543984 -139738505 - AluSc SINE Alu -13 296 3 529 304 117 16 chr12 4544438 4544755 -139737734 - L1ME LINE L1 -330 5791 5443 2375 95 0 3 chr12 4544768 4545074 -139737415 + AluSx SINE Alu 6 310 -2 2091 75 8 4 chr12 4547824 4548089 -139734400 + AluSg SINE Alu 1 266 -44 2207 112 7 3 chr12 4548995 4549300 -139733189 - AluSx SINE Alu -6 306 1 499 269 139 22 chr12 4549484 4549807 -139732682 - L1ME LINE L1 -1170 4976 4616 442 257 192 66 chr12 4549843 4550494 -139731995 - L2 LINE L2 -1 3312 2579 2030 155 6 26 chr12 4550672 4551021 -139731468 - L1MC1 LINE L1 0 6402 6061 2359 80 0 3 chr12 4552091 4552391 -139730098 + AluY SINE Alu 1 299 -12 1184 97 0 0 chr12 4552408 4552553 -139729936 + AluSq/x SINE Alu 1 145 -167 201 74 0 0 chr12 4552557 4552584 -139729905 + (A)n Simple_repeat Simple_repeat 1 27 0 1073 237 75 95 chr12 4552652 4553305 -139729184 - L1MC4 LINE L1 -1 8041 7402 1365 229 90 43 chr12 4553312 4553802 -139728687 - L1MC4 LINE L1 -779 7263 6751 2041 212 67 55 chr12 4553819 4554369 -139728120 - L1MC1 LINE L1 -351 5882 5340 342 67 0 0 chr12 4554369 4554414 -139728075 + (TG)n Simple_repeat Simple_repeat 2 46 0 2041 212 67 55 chr12 4554414 4555020 -139727469 - L1MC1 LINE L1 -893 5340 4713 * 5359 153 43 89 chr12 4555017 4555312 -139727177 - L1MC3 LINE L1 0 7785 7478 545 155 29 0 chr12 4555312 4555415 -139727074 - L1MB4 LINE L1 0 6180 6075 5359 153 43 89 chr12 4555415 4555430 -139727059 - L1MC3 LINE L1 -307 7478 7464 2472 144 20 0 chr12 4555430 4555827 -139726662 - L1MA5 LINE L1 -10 6290 5886 5359 153 43 89 chr12 4555827 4556006 -139726483 - L1MC3 LINE L1 -321 7464 7278 2352 93 10 6 chr12 4556006 4556318 -139726171 - AluSp SINE Alu 0 313 1 5359 153 43 89 chr12 4556318 4557097 -139725392 - L1MC3 LINE L1 -507 7278 6573 877 106 28 28 chr12 4557106 4557247 -139725242 - L1MC3 LINE L1 -1449 6336 6196 * 4262 250 124 40 chr12 4557236 4557532 -139724957 - L1MC1 LINE L1 -1480 4735 4465 315 0 0 0 chr12 4557532 4557567 -139724922 + (TG)n Simple_repeat Simple_repeat 2 36 0 4262 250 124 40 chr12 4557567 4557747 -139724742 - L1MC1 LINE L1 -1750 4465 4302 1505 166 110 9 chr12 4557747 4558073 -139724416 + MER46B DNA MER2_type 1 234 -2 4262 250 124 40 chr12 4558073 4558860 -139723629 - L1MC1 LINE L1 -1913 4302 3583 1829 142 3 10 chr12 4558860 4559148 -139723341 - AluSx SINE Alu -21 291 6 4262 250 124 40 chr12 4559148 4560382 -139722107 - L1MC1 LINE L1 -2632 3583 2073 965 191 0 0 chr12 4560388 4560545 -139721944 - AluSc SINE Alu -19 290 134 1299 284 126 36 chr12 4560557 4561447 -139721042 - L1MC1 LINE L1 -4318 2078 1109 2492 90 0 0 chr12 4562163 4562473 -139720016 + AluSg SINE Alu 1 310 0 23 0 0 0 chr12 4562729 4562752 -139719737 + AT_rich Low_complexity Low_complexity 1 23 0 288 0 0 0 chr12 4564240 4564272 -139718217 + (T)n Simple_repeat Simple_repeat 1 32 0 355 198 105 0 chr12 4565706 4565792 -139716697 - L2 LINE L2 -31 3282 3188 299 333 19 28 chr12 4565957 4566065 -139716424 - MIR3 SINE MIR -25 183 77 3713 19 0 0 chr12 4566190 4566609 -139715880 + L1PA2 LINE L1 5737 6155 0 284 246 0 0 chr12 4566625 4566690 -139715799 + MIR SINE MIR 2 66 -196 224 330 0 30 chr12 4567518 4567618 -139714871 + L2 LINE L2 2999 3095 -177 2424 83 0 3 chr12 4568637 4568938 -139713551 + AluY SINE Alu 1 300 -11 261 221 270 22 chr12 4569313 4569481 -139713008 + MIR SINE MIR 36 233 -29 342 325 8 0 chr12 4569958 4570081 -139712408 + MIR SINE MIR 74 197 -65 2114 118 10 0 chr12 4570799 4571088 -139711401 - AluSx SINE Alu -20 292 1 2704 52 0 0 chr12 4571692 4571999 -139710490 - AluY SINE Alu -4 307 1 239 242 15 15 chr12 4572142 4572208 -139710281 + L2 LINE L2 3247 3312 -1 23 0 0 0 chr12 4572527 4572550 -139709939 + AT_rich Low_complexity Low_complexity 1 23 0 573 76 0 0 chr12 4572992 4573071 -139709418 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 315 49 0 0 chr12 4573464 4573505 -139708984 + (CA)n Simple_repeat Simple_repeat 2 42 0 231 331 63 49 chr12 4574985 4575127 -139707362 - L2 LINE L2 -22 3250 3107 347 259 38 63 chr12 4575206 4575364 -139707125 - MIR SINE MIR -50 212 59 750 247 60 8 chr12 4575409 4575644 -139706845 - MIR SINE MIR -3 259 13 1888 106 31 91 chr12 4576416 4576736 -139705753 + AluSx SINE Alu 1 301 -11 381 302 54 27 chr12 4577256 4577405 -139705084 + MER5B DNA MER1_type 1 153 -25 2019 130 17 0 chr12 4578098 4578391 -139704098 + AluSx SINE Alu 1 298 -14 208 181 69 35 chr12 4579419 4579535 -139702954 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 * 336 224 45 0 chr12 4579493 4579627 -139702862 + (TA)n Simple_repeat Simple_repeat 2 141 0 28 0 0 0 chr12 4579631 4579659 -139702830 + AT_rich Low_complexity Low_complexity 1 28 0 194 276 0 11 chr12 4579917 4580004 -139702485 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 2367 117 6 0 chr12 4580785 4581135 -139701354 + L1PA16 LINE L1 5811 6162 -4 1462 163 48 7 chr12 4581443 4581713 -139700776 + L1MC2 LINE L1 6015 6295 -49 232 170 0 0 chr12 4581713 4581760 -139700729 + T-rich Low_complexity Low_complexity 1 47 0 1222 14 0 0 chr12 4581761 4581900 -139700589 - L1PA2 LINE L1 0 6155 6017 305 154 0 0 chr12 4581900 4581948 -139700541 + L1MC2 LINE L1 6282 6333 -11 443 101 29 0 chr12 4582173 4582242 -139700247 - Alu SINE Alu -243 75 5 24 77 0 0 chr12 4582242 4582294 -139700195 + AT_rich Low_complexity Low_complexity 1 52 0 27 29 0 0 chr12 4582667 4582701 -139699788 + AT_rich Low_complexity Low_complexity 1 34 0 270 137 20 0 chr12 4583848 4583899 -139698590 - HSMAR1 DNA Mariner -2 1285 1234 30 0 0 0 chr12 4583917 4583947 -139698542 + AT_rich Low_complexity Low_complexity 1 30 0 2231 116 0 0 chr12 4583947 4584248 -139698241 + AluSx SINE Alu 5 305 -7 319 217 87 22 chr12 4584291 4584383 -139698106 - MIR SINE MIR -78 130 33 2526 52 0 0 chr12 4585314 4585604 -139696885 - AluY SINE Alu -21 290 1 403 280 87 0 chr12 4585927 4586077 -139696412 - MIR SINE MIR -71 191 29 291 28 0 0 chr12 4586453 4586489 -139696000 + (TG)n Simple_repeat Simple_repeat 2 37 0 501 296 91 9 chr12 4587110 4587330 -139695159 + MIR SINE MIR 6 243 -19 209 139 23 0 chr12 4587359 4587402 -139695087 + (TTG)n Simple_repeat Simple_repeat 2 45 0 211 245 0 0 chr12 4587522 4587571 -139694918 + L2 LINE L2 3265 3313 0 2097 72 0 82 chr12 4587892 4588271 -139694218 - AluSc SINE Alu 0 354 1 259 288 0 68 chr12 4588663 4588781 -139693708 - MIR SINE MIR -75 187 78 324 252 99 18 chr12 4588907 4589018 -139693471 + MIR SINE MIR 49 168 -94 562 286 23 98 chr12 4589168 4589567 -139692922 - L2 LINE L2 0 3272 2904 2436 90 0 0 chr12 4589618 4589919 -139692570 + AluSx SINE Alu 1 301 -11 393 329 139 34 chr12 4589920 4590637 -139691852 - L2 LINE L2 -452 2862 2070 422 310 124 0 chr12 4591338 4591580 -139690909 - L2 LINE L2 -1265 2049 1778 1652 161 46 18 chr12 4591854 4592139 -139690350 - AluJb SINE Alu -19 293 1 1972 151 0 0 chr12 4592279 4592557 -139689932 + AluSx SINE Alu 1 278 -34 24 0 0 0 chr12 4593009 4593033 -139689456 + AT_rich Low_complexity Low_complexity 1 24 0 2317 103 0 0 chr12 4593102 4593403 -139689086 + AluY SINE Alu 1 301 -10 1011 220 19 6 chr12 4593419 4593640 -139688849 - MSTD LTR MaLR -4 392 203 220 135 19 19 chr12 4593653 4593705 -139688784 + GA-rich Low_complexity Low_complexity 4 55 0 461 178 0 0 chr12 4593768 4593841 -139688648 - MSTD LTR MaLR -323 73 1 2042 219 62 85 chr12 4593841 4594751 -139687738 - HAL1b LINE L1 -89 1259 371 185 40 0 0 chr12 4594787 4594812 -139687677 - MIR SINE MIR -25 237 213 648 254 113 29 chr12 4594871 4595146 -139687343 - HAL1b LINE L1 -981 367 70 285 329 4 9 chr12 4595216 4595355 -139687134 + CT-rich Low_complexity Low_complexity 1 138 0 417 73 0 61 chr12 4595563 4595645 -139686844 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2136 125 3 13 chr12 4595924 4596227 -139686262 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr12 4596228 4596248 -139686241 + (TA)n Simple_repeat Simple_repeat 1 20 0 728 284 192 22 chr12 4596256 4596615 -139685874 + MLT1H1 LTR MaLR 27 446 -109 6941 98 34 4 chr12 4597983 4598944 -139683545 + THE1B-int LTR MaLR 286 1282 -298 1406 94 94 47 chr12 4598945 4599158 -139683331 + AluY SINE Alu 72 294 -17 2469 77 0 3 chr12 4599158 4599469 -139683020 + THE1B-int LTR MaLR 1271 1580 0 2436 106 19 30 chr12 4599469 4599837 -139682652 + THE1B LTR MaLR 1 364 0 255 274 55 0 chr12 4600681 4600754 -139681735 - MIR SINE MIR -113 149 73 2353 97 0 10 chr12 4600914 4601222 -139681267 - AluSq SINE Alu -8 305 1 394 234 109 15 chr12 4601337 4601474 -139681015 - MLT1L LTR MaLR 0 615 466 272 243 118 5 chr12 4601475 4601563 -139680926 - MLT1L LTR MaLR -191 391 235 319 246 71 60 chr12 4601851 4602034 -139680455 - L1ME4a LINE L1 -9 6112 5928 22 0 0 0 chr12 4602093 4602115 -139680374 + AT_rich Low_complexity Low_complexity 1 22 0 1365 218 14 7 chr12 4602231 4602516 -139679973 - L1ME4a LINE L1 -338 5783 5497 296 300 25 21 chr12 4602566 4602686 -139679803 + MIR SINE MIR 2 114 -94 2308 98 0 0 chr12 4602730 4603025 -139679464 - AluSg SINE Alu -15 295 1 708 192 32 0 chr12 4603178 4603334 -139679155 - Charlie1b DNA MER1_type -9 514 354 1116 175 0 73 chr12 4603336 4603610 -139678879 + AluJb SINE Alu 40 293 -19 1504 176 119 0 chr12 4603621 4603933 -139678556 - Charlie1b DNA MER1_type -167 356 8 275 200 0 0 chr12 4603933 4603983 -139678506 + MLT1L LTR MaLR 156 205 -410 23 33 0 0 chr12 4605038 4605068 -139677421 + AT_rich Low_complexity Low_complexity 1 30 0 287 175 17 0 chr12 4605069 4605126 -139677363 - AluJ/FLAM SINE Alu -205 97 55 183 243 0 0 chr12 4605338 4605375 -139677114 - MIR3 SINE MIR -3 205 169 288 219 62 0 chr12 4607013 4607077 -139675412 + MIR SINE MIR 86 153 -55 430 195 37 137 chr12 4607094 4607284 -139675205 + MER5B DNA MER1_type 6 176 -2 194 298 0 0 chr12 4607923 4607970 -139674519 - MIR SINE MIR 0 262 216 210 293 0 0 chr12 4607972 4608054 -139674435 + T-rich Low_complexity Low_complexity 1 82 0 2120 114 20 0 chr12 4608060 4608366 -139674123 - AluSx SINE Alu 0 312 1 239 203 0 31 chr12 4608366 4608423 -139674066 - MIR SINE MIR -60 202 146 1458 185 124 43 chr12 4608423 4608769 -139673720 + MLT1A2 LTR MaLR 1 374 0 1900 133 3 7 chr12 4608770 4609072 -139673417 - AluJo SINE Alu -1 311 11 262 326 33 0 chr12 4609078 4609179 -139673310 - MIR SINE MIR -67 141 38 272 278 188 15 chr12 4609950 4610083 -139672406 - MIR SINE MIR -56 206 51 632 183 67 39 chr12 4610222 4610402 -139672087 - MER53 DNA DNA -4 185 1 882 129 232 178 chr12 4610549 4610859 -139671630 - LTR12 LTR ERV1 -228 486 153 2062 118 13 0 chr12 4610859 4611165 -139671324 - AluY SINE Alu -1 310 1 882 129 232 178 chr12 4611165 4611203 -139671286 - LTR12 LTR ERV1 -561 153 119 250 231 0 0 chr12 4611205 4611257 -139671232 - LTR30 LTR ERV1 -670 52 1 1541 223 3 0 chr12 4611310 4611633 -139670856 + L1MB3 LINE L1 5854 6177 -6 1343 210 93 110 chr12 4612531 4613292 -139669197 - MER20B DNA MER1_type 0 783 36 376 110 14 14 chr12 4613345 4613418 -139669071 + (TTTCC)n Simple_repeat Simple_repeat 2 74 0 2864 142 21 4 chr12 4613572 4614045 -139668444 + L1PB4 LINE L1 5662 6142 -14 1610 160 68 0 chr12 4614090 4614371 -139668118 - AluJb SINE Alu -12 300 1 284 285 0 80 chr12 4614419 4614556 -139667933 - MIR SINE MIR -51 211 86 301 309 22 37 chr12 4614645 4614781 -139667708 + L2 LINE L2 3180 3313 0 899 273 62 4 chr12 4615009 4615236 -139667253 - MIR SINE MIR -2 260 21 25 31 0 0 chr12 4615525 4615557 -139666932 + AT_rich Low_complexity Low_complexity 1 32 0 1509 141 32 25 chr12 4615560 4615844 -139666645 - L1MA5A LINE L1 -9 6288 6003 1960 160 0 0 chr12 4616705 4617011 -139665478 + AluSx SINE Alu 1 306 -6 218 211 21 42 chr12 4617409 4617504 -139664985 + C-rich Low_complexity Low_complexity 6 98 0 589 208 75 0 chr12 4617543 4617663 -139664826 - MER20 DNA MER1_type -90 129 1 1116 234 72 41 chr12 4617847 4618210 -139664279 + MLT1B LTR MaLR 6 379 -11 2093 103 33 0 chr12 4619167 4619469 -139663020 - AluSx SINE Alu 0 312 1 1740 106 41 24 chr12 4619655 4619797 -139662692 - AluSx SINE Alu -14 298 160 2744 123 38 131 chr12 4619797 4620408 -139662081 - MER41C LTR ERV1 0 554 1 1740 106 41 24 chr12 4620408 4620558 -139661931 - AluSx SINE Alu -152 160 1 917 142 0 0 chr12 4620558 4620692 -139661797 - AluJb SINE Alu -177 135 2 308 276 52 9 chr12 4620752 4620868 -139661621 + L1MC1 LINE L1 5883 6003 -330 827 194 0 0 chr12 4620923 4621083 -139661406 + AluJb SINE Alu 132 291 -21 237 157 146 79 chr12 4621123 4621212 -139661277 + L1MB8 LINE L1 6040 6134 -44 291 104 0 0 chr12 4621599 4621647 -139660842 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2108 82 4 0 chr12 4621647 4621927 -139660562 - AluSp SINE Alu -32 281 1 2136 100 0 19 chr12 4621930 4622239 -139660250 - AluSx SINE Alu -9 303 1 324 294 154 37 chr12 4622753 4622889 -139659600 + MER5A DNA MER1_type 33 184 -5 322 254 18 64 chr12 4622883 4622993 -139659496 + L2 LINE L2 3168 3272 0 * 200 371 22 22 chr12 4623088 4623177 -139659312 + MIR3 SINE MIR 104 192 -16 2298 77 0 19 chr12 4623918 4624230 -139658259 - AluY SINE Alu -5 306 1 2389 67 0 0 chr12 4624617 4624916 -139657573 + AluY SINE Alu 1 299 -12 1560 160 52 10 chr12 4625897 4626185 -139656304 + AluJb SINE Alu 1 300 -12 276 279 109 73 chr12 4628812 4628977 -139653512 - MIR3 SINE MIR -5 203 33 263 326 36 14 chr12 4629065 4629203 -139653286 + MIR3 SINE MIR 13 153 -55 1796 114 5 152 chr12 4629407 4629802 -139652687 + MER1B DNA MER1_type 1 337 0 180 315 19 0 chr12 4630512 4630566 -139651923 + L2 LINE L2 3138 3192 -80 1577 149 32 18 chr12 4630617 4630899 -139651590 + AluJo SINE Alu 10 295 -17 185 182 0 0 chr12 4631187 4631220 -139651269 + L2 LINE L2 3240 3272 0 532 331 6 0 chr12 4631319 4631476 -139651013 + MIR SINE MIR 78 235 -27 529 281 134 77 chr12 4631877 4632347 -139650142 + L1MC4a LINE L1 4794 5290 -856 1121 264 108 48 chr12 4632371 4632760 -139649729 + L1MC4a LINE L1 5337 5770 -2038 2003 101 31 3 chr12 4632760 4633048 -139649441 + AluSc SINE Alu 11 306 -3 1121 264 108 48 chr12 4633048 4633215 -139649274 + L1MC4a LINE L1 5770 5926 -1882 206 245 0 0 chr12 4633929 4633982 -139648507 + T-rich Low_complexity Low_complexity 1 53 0 257 271 40 66 chr12 4635445 4635596 -139646893 - MIR3 SINE MIR -16 192 46 279 328 26 72 chr12 4637139 4637334 -139645155 - MER5A DNA MER1_type -3 186 1 282 282 0 0 chr12 4638212 4638290 -139644199 + MER69 DNA AcHobo 1 78 -99 582 267 23 8 chr12 4640760 4640891 -139641598 - MIR SINE MIR -106 156 24 592 271 94 6 chr12 4642443 4642613 -139639876 + MIR SINE MIR 21 205 -57 251 299 153 69 chr12 4645249 4645582 -139636907 + L2 LINE L2 2799 3156 -116 201 367 51 0 chr12 4645709 4645788 -139636701 + L2 LINE L2 3187 3269 -3 3665 271 44 28 chr12 4645939 4647212 -139635277 + L1MEc LINE L1 16 756 -5640 2033 130 3 3 chr12 4647212 4647520 -139634969 + AluSg SINE Alu 1 308 -2 3665 271 44 28 chr12 4647520 4647962 -139634527 + L1MEc LINE L1 756 1189 -5207 1931 213 29 17 chr12 4647948 4648361 -139634128 + L1MC1 LINE L1 5 422 -6004 * 2117 126 152 0 chr12 4648354 4648775 -139633714 + L1MC1 LINE L1 1035 1519 -4907 2039 155 159 80 chr12 4648782 4648927 -139633562 + MER39 LTR ERV1 20 152 -555 2009 110 0 4 chr12 4648927 4649208 -139633281 + AluSx SINE Alu 1 280 -32 2039 155 159 80 chr12 4649208 4649577 -139632912 + MER39 LTR ERV1 152 575 -132 871 118 69 0 chr12 4649579 4649723 -139632766 - L1MCa LINE L1 -4759 1667 1514 255 232 0 18 chr12 4649723 4649779 -139632710 - MER39 LTR ERV1 0 707 653 747 180 77 16 chr12 4649786 4649980 -139632509 + L1MC1 LINE L1 1977 2182 -4244 2269 97 0 3 chr12 4649980 4650290 -139632199 + AluSx SINE Alu 1 309 -3 792 183 0 15 chr12 4650305 4650442 -139632047 + FLAM_C SINE Alu 6 140 -3 8878 220 39 17 chr12 4650473 4652891 -139629598 + L1MC1 LINE L1 2170 4533 -2080 2263 80 3 10 chr12 4652891 4653179 -139629310 + AluSq SINE Alu 9 294 -19 8878 220 39 17 chr12 4653179 4654532 -139627957 + L1MC1 LINE L1 4533 6056 -557 2237 107 3 0 chr12 4654532 4654831 -139627658 + AluSg SINE Alu 1 300 -10 8878 220 39 17 chr12 4654831 4655385 -139627104 + L1MC1 LINE L1 6056 6596 -17 348 255 49 11 chr12 4655409 4655535 -139626954 + L1ME1 LINE L1 1500 1728 -4916 2256 59 52 0 chr12 4655571 4655861 -139626628 + AluY SINE Alu 1 305 -6 2603 182 31 2 chr12 4655953 4656469 -139626020 - L1MA6 LINE L1 0 6300 5770 2070 254 149 14 chr12 4656472 4656484 -139626005 + L1ME1 LINE L1 1874 1883 -4761 2175 69 4 7 chr12 4656484 4656759 -139625730 + AluSc SINE Alu 33 306 -3 2070 254 149 14 chr12 4656759 4657984 -139624505 + L1ME1 LINE L1 1883 3225 -3419 * 2840 222 95 34 chr12 4657982 4658187 -139624302 + L1ME1 LINE L1 4028 4219 -2425 2388 66 0 26 chr12 4658187 4658491 -139623998 - AluY SINE Alu -15 296 1 2840 222 95 34 chr12 4658491 4659205 -139623284 + L1ME1 LINE L1 4219 5003 -1641 1043 229 16 12 chr12 4659215 4659464 -139623025 + MLT2D LTR ERVL 1 250 -164 5599 143 6 28 chr12 4659507 4659829 -139622660 + L1MA6 LINE L1 5469 5796 -1002 200 35 35 0 chr12 4659829 4659858 -139622631 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5599 143 6 28 chr12 4659858 4660787 -139621702 + L1MA6 LINE L1 5796 6692 -106 3064 237 28 11 chr12 4660792 4661546 -139620943 + L1MB7 LINE L1 5407 6173 -11 785 251 144 0 chr12 4661564 4661835 -139620654 + L1ME1 LINE L1 5114 5423 -1221 1288 205 27 67 chr12 4661843 4662214 -139620275 + MLT1D LTR MaLR 1 356 -149 2800 213 72 57 chr12 4662217 4662338 -139620151 + L1ME1 LINE L1 5557 5675 -989 189 0 0 0 chr12 4662338 4662359 -139620130 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1813 167 0 0 chr12 4662362 4662644 -139619845 - AluSx SINE Alu -30 282 1 2800 213 72 57 chr12 4662644 4663613 -139618876 + L1ME1 LINE L1 5676 6661 -3 341 329 120 21 chr12 4663834 4664068 -139618421 - L3 LINE CR1 -1 1576 1320 232 301 41 0 chr12 4664398 4664471 -139618018 + L3 LINE CR1 1486 1561 -16 460 252 202 38 chr12 4664569 4664831 -139617658 + MLT1L LTR MaLR 311 615 0 2284 188 62 10 chr12 4664908 4665420 -139617069 + MLT1F LTR MaLR 4 542 0 947 242 0 0 chr12 4665735 4665913 -139616576 + MER58A DNA MER1_type 1 178 -46 194 150 25 0 chr12 4666185 4666225 -139616264 + CT-rich Low_complexity Low_complexity 2 42 0 219 69 0 0 chr12 4666321 4666350 -139616139 + (CA)n Simple_repeat Simple_repeat 2 30 0 229 333 65 28 chr12 4666866 4666974 -139615515 - L2 LINE L2 -88 3184 3073 5309 159 52 61 chr12 4667855 4669212 -139613277 + L1M2 LINE L1 4187 5535 -743 256 77 0 0 chr12 4669247 4669286 -139613203 + L1M2 LINE L1 5785 5823 -477 2455 151 26 28 chr12 4669315 4669811 -139612678 + L1MA8 LINE L1 5786 6280 -11 566 275 185 18 chr12 4669976 4670198 -139612291 - MIR SINE MIR 0 262 4 479 227 17 0 chr12 4670664 4670783 -139611706 + L1MB5 LINE L1 6054 6174 0 240 295 63 53 chr12 4671119 4671214 -139611275 + L2 LINE L2 3160 3255 -17 358 293 169 38 chr12 4671916 4672182 -139610307 - L2 LINE L2 -20 3252 2952 896 253 0 10 chr12 4672256 4672454 -139610035 + MER58A DNA MER1_type 1 196 -28 1970 213 89 38 chr12 4672933 4674223 -139608266 - L1MDb LINE L1 -4227 2179 771 519 303 156 45 chr12 4674483 4674836 -139607653 + L2 LINE L2 2920 3311 -2 235 330 45 0 chr12 4675032 4675120 -139607369 - MIR SINE MIR -111 151 60 372 276 86 32 chr12 4675125 4675467 -139607022 - L1MEc LINE L1 -892 1684 1268 691 269 51 76 chr12 4675475 4675787 -139606702 + L1ME1 LINE L1 4947 5265 -901 2122 125 0 0 chr12 4675787 4676076 -139606413 + AluSg SINE Alu 1 289 -21 691 269 51 76 chr12 4676076 4676195 -139606294 + L1ME1 LINE L1 5265 5386 -780 2355 98 7 0 chr12 4676195 4676502 -139605987 + AluSx SINE Alu 2 310 -2 691 269 51 76 chr12 4676502 4677019 -139605470 + L1ME1 LINE L1 5386 5867 -299 1410 225 137 63 chr12 4677190 4677701 -139604788 + MLT1H LTR MaLR 1 549 0 278 127 13 38 chr12 4678730 4678809 -139603680 + GA-rich Low_complexity Low_complexity 3 79 0 564 260 106 41 chr12 4678810 4679056 -139603433 - MIR SINE MIR 0 262 1 2566 244 16 4 chr12 4679358 4679919 -139602570 + MER82 DNA MER2_type 1 568 -85 384 221 0 0 chr12 4680030 4680107 -139602382 + MER82 DNA MER2_type 577 653 0 1087 168 35 0 chr12 4681812 4682014 -139600475 + MER2 DNA MER2_type 1 209 -136 21 57 0 0 chr12 4684214 4684249 -139598240 + AT_rich Low_complexity Low_complexity 1 35 0 1778 156 72 46 chr12 4686152 4686203 -139596286 - Charlie1b DNA MER1_type -2240 521 473 686 213 8 0 chr12 4686203 4686325 -139596164 + FLAM_A SINE Alu 1 123 -10 1778 156 72 46 chr12 4686325 4686689 -139595800 - Charlie1b DNA MER1_type -2288 473 95 201 369 54 39 chr12 4687528 4687658 -139594831 + L2 LINE L2 3137 3268 -4 2280 91 0 0 chr12 4688080 4688385 -139594104 + AluSx SINE Alu 1 305 0 21 0 0 0 chr12 4688487 4688508 -139593981 + AT_rich Low_complexity Low_complexity 1 21 0 2963 220 39 8 chr12 4688543 4689283 -139593206 - L1M4 LINE L1 -930 5216 4454 23 0 0 0 chr12 4690208 4690231 -139592258 + AT_rich Low_complexity Low_complexity 1 23 0 1884 225 115 42 chr12 4691218 4691791 -139590698 + L1ME3A LINE L1 5556 6170 0 1886 109 7 59 chr12 4692934 4693238 -139589251 - MER1B DNA MER1_type 0 339 52 576 208 9 0 chr12 4693458 4693564 -139588925 - FLAM_A SINE Alu -18 124 18 183 295 0 0 chr12 4694058 4694136 -139588353 + GA-rich Low_complexity Low_complexity 3 80 0 216 0 0 0 chr12 4694915 4694939 -139587550 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2160 107 0 0 chr12 4694939 4695220 -139587269 - AluSc SINE Alu -28 281 1 1090 291 156 29 chr12 4695224 4695646 -139586843 + L2 LINE L2 2329 2696 -617 3502 116 27 12 chr12 4695646 4696164 -139586325 + MER1A DNA MER1_type 1 526 -1 1090 291 156 29 chr12 4696164 4696626 -139585863 + L2 LINE L2 2696 3313 0 420 288 51 24 chr12 4697529 4697722 -139584767 + MIR SINE MIR 16 218 -44 25 51 0 0 chr12 4697779 4697818 -139584671 + AT_rich Low_complexity Low_complexity 1 39 0 326 287 131 16 chr12 4748696 4748818 -139533671 + MARNA DNA Mariner 57 192 -394 1189 262 42 42 chr12 4749973 4750404 -139532085 + L1MC4a LINE L1 5536 5966 -1842 2118 144 3 0 chr12 4751002 4751308 -139531181 + AluSx SINE Alu 2 308 -4 27071 28 18 1 chr12 4751434 4757446 -139525043 + L1PA2 LINE L1 1 6161 0 1042 31 0 8 chr12 4757504 4757633 -139524856 + L1PA3 LINE L1 6028 6155 0 3169 166 76 29 chr12 4757802 4758496 -139523993 + L1MA9 LINE L1 5576 6302 -10 3562 94 37 2 chr12 4758899 4759418 -139523071 + L1PA11 LINE L1 5638 6174 0 23 86 0 0 chr12 4760102 4760160 -139522329 + AT_rich Low_complexity Low_complexity 1 58 0 207 0 0 0 chr12 4760223 4760246 -139522243 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 264 30 0 0 chr12 4760245 4760278 -139522211 + (GA)n Simple_repeat Simple_repeat 2 34 0 860 136 0 0 chr12 4761114 4761232 -139521257 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr12 4761232 4761262 -139521227 + AT_rich Low_complexity Low_complexity 1 30 0 1493 148 129 8 chr12 4762209 4762473 -139520016 + MER1B DNA MER1_type 44 339 0 1623 199 65 3 chr12 4762473 4762825 -139519664 + L1ME1 LINE L1 96 469 -5954 563 241 73 102 chr12 4762831 4763146 -139519343 + L1ME1 LINE L1 851 1156 -5267 1059 65 7 0 chr12 4763179 4763317 -139519172 + L1PB1 LINE L1 6013 6151 0 307 217 152 0 chr12 4763523 4763615 -139518874 + L1ME1 LINE L1 1246 1351 -5072 2109 100 0 31 chr12 4763617 4763906 -139518583 + AluSg SINE Alu 1 280 -30 574 213 85 16 chr12 4763934 4764141 -139518348 + L1ME1 LINE L1 1331 1542 -4890 270 242 0 0 chr12 4764174 4764236 -139518253 + L1ME1 LINE L1 4422 4483 -2458 180 0 0 0 chr12 4764236 4764256 -139518233 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1223 191 39 13 chr12 4764326 4764457 -139518032 + L1ME1 LINE L1 5786 5912 -1029 1624 176 42 3 chr12 4764457 4764769 -139517720 + L1MC1 LINE L1 6001 6324 -9 1223 191 39 13 chr12 4764769 4764946 -139517543 + L1ME1 LINE L1 5912 6102 -839 2378 193 67 27 chr12 4764952 4765516 -139516973 + L1ME1 LINE L1 6170 6756 -205 483 198 52 13 chr12 4765526 4765658 -139516831 + L1ME1 LINE L1 6836 7129 0 5215 41 2 5 chr12 4765880 4766513 -139515976 + L1PA5 LINE L1 5524 6154 0 355 143 32 16 chr12 4766572 4766635 -139515854 - AluJ/FRAM SINE Alu -8 294 231 307 238 75 0 chr12 4766680 4766760 -139515729 + MER112 DNA MER1_type 1 86 -174 237 269 0 125 chr12 4766965 4767069 -139515420 - L2 LINE L2 0 3272 3182 244 264 107 14 chr12 4767332 4767472 -139515017 + L2 LINE L2 3090 3242 -71 22 0 0 0 chr12 4768210 4768232 -139514257 + AT_rich Low_complexity Low_complexity 1 22 0 931 201 31 35 chr12 4768701 4768930 -139513559 + L1ME3A LINE L1 5938 6165 -5 2345 98 0 0 chr12 4769098 4769393 -139513096 + AluSx SINE Alu 1 295 -17 390 21 0 0 chr12 4771435 4771482 -139511007 + (CA)n Simple_repeat Simple_repeat 2 48 0 634 263 202 3 chr12 4771917 4772144 -139510345 + MIR SINE MIR 1 251 -11 314 315 39 62 chr12 4774180 4774440 -139508049 + L2 LINE L2 490 743 -2571 851 39 0 0 chr12 4774452 4774554 -139507935 + MER83 LTR ERV1 1 102 -346 1146 74 217 0 chr12 4774556 4774745 -139507744 - MER30 DNA MER1_type 0 230 1 * 1698 144 101 15 chr12 4774745 4775069 -139507420 + MER83 LTR ERV1 97 448 0 768 322 162 37 chr12 4775073 4775806 -139506683 + L2 LINE L2 759 1583 -1731 342 342 84 8 chr12 4775816 4776053 -139506436 + L2 LINE L2 1694 1948 -1366 301 221 105 0 chr12 4776078 4776173 -139506316 + HsTC2 DNA Tc2 1794 1898 0 908 139 61 11 chr12 4776276 4776456 -139506033 - MER53 DNA DNA 0 189 1 1881 158 3 7 chr12 4776941 4777239 -139505250 - AluJb SINE Alu -13 299 3 473 296 45 75 chr12 4777652 4777747 -139504742 + MIR3 SINE MIR 6 93 -115 791 232 27 16 chr12 4777747 4777932 -139504557 - MER5A DNA MER1_type -2 187 1 473 296 45 75 chr12 4777932 4778035 -139504454 + MIR3 SINE MIR 93 198 -10 26 50 0 0 chr12 4778323 4778363 -139504126 + AT_rich Low_complexity Low_complexity 1 40 0 342 338 81 68 chr12 4779386 4780024 -139502465 + L2 LINE L2 2622 3264 -8 858 257 50 20 chr12 4780319 4780619 -139501870 + L1ME3 LINE L1 5590 5898 -264 280 277 89 30 chr12 4781865 4781966 -139500523 - MIR SINE MIR -150 112 6 1346 297 95 25 chr12 4782221 4782833 -139499656 - L2 LINE L2 -354 2960 2306 1373 227 42 30 chr12 4782854 4783184 -139499305 + Charlie1a DNA MER1_type 1 334 -1121 1086 202 32 9 chr12 4783302 4783520 -139498969 + Charlie1a DNA MER1_type 326 548 -907 1390 133 69 9 chr12 4783629 4783847 -139498642 + MER46A DNA MER2_type 1 231 -5 41 66 0 0 chr12 4784281 4784357 -139498132 + AT_rich Low_complexity Low_complexity 1 76 0 2160 116 7 3 chr12 4785598 4785899 -139496590 - AluSq SINE Alu -11 302 1 5049 144 45 9 chr12 4787179 4788133 -139494356 + L1MB7 LINE L1 5196 6184 0 244 220 68 17 chr12 4788340 4788399 -139494090 + L2 LINE L2 3202 3263 -9 22 35 0 0 chr12 4788422 4788451 -139494038 + AT_rich Low_complexity Low_complexity 1 29 0 1819 160 14 0 chr12 4789609 4789902 -139492587 - AluJo SINE Alu -15 297 1 646 299 56 21 chr12 4790250 4790484 -139492005 - MIR SINE MIR -14 248 7 21 0 0 0 chr12 4790722 4790743 -139491746 + AT_rich Low_complexity Low_complexity 1 21 0 223 421 19 0 chr12 4791528 4791635 -139490854 - L2 LINE L2 -222 3050 2942 202 295 65 36 chr12 4791696 4791835 -139490654 - L2 LINE L2 -471 2843 2701 24 53 0 0 chr12 4791900 4791938 -139490551 + AT_rich Low_complexity Low_complexity 1 38 0 392 274 78 0 chr12 4792017 4792119 -139490370 - L2 LINE L2 -2 3311 3202 939 165 60 22 chr12 4792184 4792366 -139490123 + MER46A DNA MER2_type 47 235 -1 900 124 7 15 chr12 4792367 4792504 -139489985 + L1M3 LINE L1 5612 5747 -424 2014 161 0 0 chr12 4793167 4793478 -139489011 - AluSx SINE Alu -1 311 1 389 266 28 37 chr12 4793682 4793752 -139488737 + L1MC5 LINE L1 7301 7370 -591 2337 97 3 0 chr12 4793752 4794050 -139488439 + AluSx SINE Alu 1 299 -13 389 266 28 37 chr12 4794050 4794197 -139488292 + L1MC5 LINE L1 7370 7516 -445 551 217 108 43 chr12 4794204 4794481 -139488008 + L1MC5 LINE L1 7621 7915 -46 272 177 146 52 chr12 4794539 4794635 -139487854 + L1ME4a LINE L1 5999 6103 -18 24 53 0 0 chr12 4794693 4794731 -139487758 + AT_rich Low_complexity Low_complexity 1 38 0 696 239 22 22 chr12 4795188 4795372 -139487117 - MIR SINE MIR -2 260 77 466 315 43 16 chr12 4795876 4796060 -139486429 - MIR SINE MIR -51 211 23 1774 173 90 22 chr12 4796623 4797023 -139485466 - MLT1D LTR MaLR -78 427 1 1184 180 0 9 chr12 4797369 4797580 -139484909 - MER3 DNA MER1_type 0 209 1 330 256 259 41 chr12 4797872 4798239 -139484250 + L2 LINE L2 2529 2975 -339 544 264 121 25 chr12 4798514 4798753 -139483736 + MIR SINE MIR 1 262 0 719 232 98 31 chr12 4799111 4799365 -139483124 - L1ME4a LINE L1 -248 5873 5603 182 400 43 14 chr12 4799647 4799787 -139482702 + L2 LINE L2 2833 2976 -338 863 293 30 19 chr12 4800332 4800602 -139481887 - Charlie8 DNA MER1_type -2141 276 4 28 0 0 0 chr12 4800822 4800850 -139481639 + AT_rich Low_complexity Low_complexity 1 28 0 216 338 198 9 chr12 4803225 4803548 -139478941 + L2 LINE L2 2350 2733 -581 184 316 167 47 chr12 4803588 4803863 -139478626 + L2 LINE L2 2804 3111 -161 2430 56 0 0 chr12 4803988 4804275 -139478214 - AluSc SINE Alu 0 309 23 591 157 37 9 chr12 4804306 4804414 -139478075 - AluSq/x SINE Alu -202 111 2 660 326 70 56 chr12 4805965 4806624 -139475865 + L3 LINE CR1 906 1573 -4 575 149 0 9 chr12 4806697 4806811 -139475678 + L1MA4 LINE L1 6039 6151 -149 32 57 0 0 chr12 4806822 4806875 -139475614 + AT_rich Low_complexity Low_complexity 1 53 0 317 311 38 0 chr12 4807174 4807280 -139475209 + L2 LINE L2 3159 3268 -4 423 257 37 93 chr12 4807903 4808117 -139474372 - MIR3 SINE MIR -6 202 1 2281 98 0 10 chr12 4808166 4808463 -139474026 - AluSx SINE Alu -14 298 5 185 399 42 7 chr12 4808582 4808725 -139473764 + L2 LINE L2 2483 2630 -684 2504 88 0 0 chr12 4810917 4811224 -139471265 - AluSp SINE Alu -6 307 1 398 227 55 18 chr12 4812033 4812143 -139470346 - MIR SINE MIR -100 162 49 923 109 0 0 chr12 4812180 4812299 -139470190 - FLAM_C SINE Alu -24 119 1 1792 155 41 10 chr12 4812463 4812579 -139469910 + AluJb SINE Alu 5 116 -196 408 40 0 0 chr12 4812579 4812629 -139469860 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1792 155 41 10 chr12 4812629 4812803 -139469686 + AluJb SINE Alu 116 304 -8 33 66 0 0 chr12 4813201 4813262 -139469227 + AT_rich Low_complexity Low_complexity 1 61 0 212 224 104 0 chr12 4813868 4813935 -139468554 + L2 LINE L2 3005 3078 -235 458 187 207 33 chr12 4813975 4814125 -139468364 + MER33 DNA MER1_type 1 176 -148 194 114 0 23 chr12 4814128 4814172 -139468317 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 868 136 35 0 chr12 4814212 4814381 -139468108 + MER33 DNA MER1_type 189 363 0 248 368 8 0 chr12 4814383 4814500 -139467989 + L2 LINE L2 3191 3308 -5 306 234 99 63 chr12 4814516 4814627 -139467862 - L2 LINE L2 0 3313 3199 223 222 321 12 chr12 4814734 4814815 -139467674 + MER5B DNA MER1_type 1 106 -72 2417 58 0 45 chr12 4814822 4815133 -139467356 - AluY SINE Alu -14 297 1 276 307 0 40 chr12 4816219 4816320 -139466169 - MIR SINE MIR -110 152 56 21 0 0 0 chr12 4816380 4816401 -139466088 + AT_rich Low_complexity Low_complexity 1 21 0 2441 84 0 0 chr12 4816482 4816791 -139465698 + AluY SINE Alu 1 309 -2 981 280 33 77 chr12 4817167 4817267 -139465222 - L1M4 LINE L1 -376 5802 5699 2031 131 0 7 chr12 4817267 4817558 -139464931 - AluSx SINE Alu -23 289 1 981 280 33 77 chr12 4817558 4817838 -139464651 - L1M4 LINE L1 -479 5699 5408 207 0 0 0 chr12 4817838 4817861 -139464628 + (TG)n Simple_repeat Simple_repeat 2 24 0 2141 108 0 11 chr12 4817861 4818147 -139464342 - AluSc SINE Alu -26 283 1 981 280 33 77 chr12 4818147 4818428 -139464061 - L1M4 LINE L1 -768 5410 5166 * 5527 188 36 16 chr12 4818409 4819779 -139462710 - L1MC2 LINE L1 -20 6307 4883 644 203 31 8 chr12 4819779 4819907 -139462582 - FLAM_A SINE Alu -2 131 1 5527 188 36 16 chr12 4819907 4820533 -139461956 - L1MC2 LINE L1 -1444 4883 4271 517 254 58 111 chr12 4820673 4821240 -139461249 - L1MC2 LINE L1 -4883 1236 700 267 313 9 35 chr12 4821255 4821370 -139461119 - MIR SINE MIR -131 131 20 2393 92 3 0 chr12 4821533 4821871 -139460618 + AluSc SINE Alu 1 309 0 227 259 56 0 chr12 4822105 4822159 -139460330 - L2 LINE L2 -324 2989 2933 336 329 48 6 chr12 4822445 4822612 -139459877 + MIR3 SINE MIR 7 180 -28 235 204 0 20 chr12 4824276 4824325 -139458164 + CT-rich Low_complexity Low_complexity 2 49 0 1563 127 4 0 chr12 4824354 4824583 -139457906 - Tigger4(Zombi) DNA MER2_type 0 2731 2502 2195 65 25 4 chr12 4824700 4824977 -139457512 + AluSp SINE Alu 1 283 -30 327 104 0 0 chr12 4824977 4825025 -139457464 + (AAATG)n Simple_repeat Simple_repeat 3 50 0 665 162 0 0 chr12 4825674 4825779 -139456710 - AluSg/x SINE Alu -30 282 178 1312 100 0 0 chr12 4826063 4826233 -139456256 - AluSq SINE Alu -143 170 1 242 260 65 13 chr12 4826696 4826773 -139455716 - MER5B DNA MER1_type -2 176 96 197 221 39 78 chr12 4826779 4826856 -139455633 + L2 LINE L2 3199 3272 0 2590 63 0 0 chr12 4827091 4827393 -139455096 - AluY SINE Alu -9 302 1 3068 28 3 0 chr12 4827962 4828321 -139454168 + L1PA4 LINE L1 5788 6147 -8 1382 154 118 37 chr12 4828476 4828748 -139453741 + AluJo SINE Alu 5 298 -4 345 24 0 0 chr12 4829244 4829286 -139453203 + (CA)n Simple_repeat Simple_repeat 2 43 0 553 254 129 0 chr12 4829401 4829594 -139452895 - MIR SINE MIR -39 223 6 274 232 0 0 chr12 4830512 4830568 -139451921 + MER113 DNA MER1_type? 4 59 -462 918 199 0 11 chr12 4830591 4830772 -139451717 - FRAM SINE Alu -5 171 1 3631 107 71 0 chr12 4831757 4832309 -139450180 - L1MA2 LINE L1 0 6304 5714 529 274 28 22 chr12 4832495 4832674 -139449815 - MIR SINE MIR -35 227 48 2060 229 122 18 chr12 4833889 4834510 -139447979 - MER76 LTR ERV 0 688 3 514 279 94 35 chr12 4834702 4835021 -139447468 - L3 LINE CR1 -197 1380 1043 227 181 138 60 chr12 4835277 4835393 -139447096 - L3 LINE CR1 -660 917 793 321 236 292 14 chr12 4836450 4836594 -139445895 - MER5A DNA MER1_type -2 187 4 2003 115 40 0 chr12 4836784 4837062 -139445427 - AluSq SINE Alu -24 289 1 310 305 21 0 chr12 4837887 4837982 -139444507 - MIR3 SINE MIR -22 186 90 306 321 139 12 chr12 4838279 4838444 -139444045 - MIR3 SINE MIR -7 201 16 2133 98 0 80 chr12 4840296 4840622 -139441867 + AluSx SINE Alu 1 300 -12 777 179 8 0 chr12 4840633 4840756 -139441733 + FLAM_C SINE Alu 1 124 -9 360 320 122 12 chr12 4840898 4841145 -139441344 + Charlie8 DNA MER1_type 1 274 -2143 198 0 0 0 chr12 4841809 4841831 -139440658 + (T)n Simple_repeat Simple_repeat 1 22 0 196 297 0 14 chr12 4842122 4842196 -139440293 - L2 LINE L2 -222 3050 2978 378 291 20 33 chr12 4842396 4842547 -139439942 + MIR3 SINE MIR 47 195 -13 328 274 142 0 chr12 4842857 4842970 -139439519 - L2 LINE L2 -7 3265 3137 1584 235 145 9 chr12 4843153 4843587 -139438902 - MER21B LTR ERV1 -352 511 19 349 256 13 0 chr12 4843609 4843687 -139438802 - MER21B LTR ERV1 -773 90 12 441 269 214 12 chr12 4843780 4844200 -139438289 + L1ME4a LINE L1 5520 6016 -105 32 0 0 0 chr12 4844308 4844340 -139438149 + AT_rich Low_complexity Low_complexity 1 32 0 315 0 0 0 chr12 4844415 4844450 -139438039 + (TG)n Simple_repeat Simple_repeat 2 36 0 249 268 0 37 chr12 4844832 4844914 -139437575 + T-rich Low_complexity Low_complexity 2 80 0 789 256 35 0 chr12 4846491 4846694 -139435795 + MIR SINE MIR 29 238 -24 189 0 0 0 chr12 4847724 4847745 -139434744 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1584 214 119 69 chr12 4847747 4848832 -139433657 - Charlie2b DNA MER1_type -108 2754 1559 362 19 0 39 chr12 4848832 4848884 -139433605 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1584 214 119 69 chr12 4848884 4848988 -139433501 - Charlie2b DNA MER1_type -1303 1559 1462 246 261 232 22 chr12 4849014 4849152 -139433337 + MIR3 SINE MIR 6 172 -36 187 345 18 0 chr12 4849687 4849742 -139432747 + MIR SINE MIR 30 85 -123 210 359 26 39 chr12 4851786 4851942 -139430547 - MER5A DNA MER1_type 0 189 36 198 356 20 27 chr12 4851815 4851964 -139430525 + MER5A DNA MER1_type 40 187 -2 * 224 312 52 0 chr12 4853034 4853111 -139429378 - MIR SINE MIR -117 145 65 272 238 152 29 chr12 4853519 4853624 -139428865 + MIR3 SINE MIR 82 199 -9 321 355 0 0 chr12 4854071 4854195 -139428294 + L3 LINE CR1 801 924 -653 580 312 42 39 chr12 4854360 4854693 -139427796 + L3 LINE CR1 1243 1576 -1 813 291 87 4 chr12 4855704 4855934 -139426555 + MIR SINE MIR 2 250 -12 493 299 14 41 chr12 4856605 4856826 -139425663 - MLT1K LTR MaLR -7 581 367 182 352 0 55 chr12 4857573 4857664 -139424825 - MIR SINE MIR -129 133 48 193 285 140 39 chr12 4857679 4857858 -139424631 + L3b LINE CR1 1238 1434 -149 342 287 155 0 chr12 4858775 4858904 -139423585 - MIR3 SINE MIR -2 206 58 3355 220 62 43 chr12 4859155 4860009 -139422480 + L1MDa LINE L1 1298 2196 -4344 2251 114 3 0 chr12 4860009 4860307 -139422182 + AluSx SINE Alu 1 299 -13 3355 220 62 43 chr12 4860307 4860847 -139421642 + L1MDa LINE L1 2196 2724 -3816 2097 200 44 68 chr12 4860850 4861092 -139421397 + L1MB7 LINE L1 4838 5084 -1100 955 205 68 0 chr12 4861092 4861297 -139421192 - MER20 DNA MER1_type 0 219 1 2097 200 44 68 chr12 4861297 4861815 -139420674 + L1MB7 LINE L1 5084 5558 -626 1847 154 13 7 chr12 4861815 4862120 -139420369 + AluJo SINE Alu 1 307 -5 2097 200 44 68 chr12 4862120 4862545 -139419944 + L1MB7 LINE L1 5558 5992 -192 339 247 77 29 chr12 4862555 4862725 -139419764 + L1 LINE L1 4655 4832 -1314 2217 73 52 0 chr12 4862748 4863034 -139419455 + AluSg SINE Alu 1 301 -9 292 246 9 27 chr12 4863036 4863123 -139419366 + L1 LINE L1 4950 5036 -1110 6788 133 56 2 chr12 4863123 4864291 -139418198 + Tigger3b DNA MER2_type 1 1231 0 292 246 9 27 chr12 4864291 4864313 -139418176 + L1 LINE L1 5036 5057 -1089 317 284 82 45 chr12 4864338 4864581 -139417908 + L1MC/D LINE L1 5083 5334 -812 5160 129 46 6 chr12 4864587 4866301 -139416188 + L1PA14 LINE L1 4409 6159 -2 709 291 123 14 chr12 4866301 4866731 -139415758 + L1MC/D LINE L1 5316 5792 -2016 21 0 0 0 chr12 4866756 4866777 -139415712 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr12 4866820 4866845 -139415644 + AT_rich Low_complexity Low_complexity 1 25 0 432 0 0 0 chr12 4866855 4866903 -139415586 + (TG)n Simple_repeat Simple_repeat 2 49 0 587 243 158 7 chr12 4867751 4867903 -139414586 - MER5A DNA MER1_type -12 177 3 267 147 27 13 chr12 4868217 4868292 -139414197 + GA-rich Low_complexity Low_complexity 1 76 0 984 280 4 30 chr12 4871462 4871730 -139410759 - MIR SINE MIR 0 262 2 1044 92 0 7 chr12 4871760 4871912 -139410577 - L1PA13 LINE L1 -280 5883 5733 2105 52 4 0 chr12 4871912 4872182 -139410307 + L1PA13 LINE L1 5887 6158 -5 680 313 39 27 chr12 4872727 4872983 -139409506 - MIR SINE MIR -2 260 2 216 0 0 0 chr12 4873002 4873026 -139409463 + (GAAAA)n Simple_repeat Simple_repeat 3 26 0 1249 182 176 6 chr12 4873159 4873511 -139408978 + LTR37A LTR ERV1 13 424 -2 207 69 0 0 chr12 4874132 4874161 -139408328 + (CA)n Simple_repeat Simple_repeat 1 29 0 430 204 8 15 chr12 4874289 4874421 -139408068 + MER31-int LTR ERV1 1312 1442 -3494 293 266 39 34 chr12 4874563 4874770 -139407719 + MER31-int LTR ERV1 1679 1886 -3050 2474 80 0 0 chr12 4875167 4875478 -139407011 - AluY SINE Alu 0 311 1 726 153 48 16 chr12 4875685 4875809 -139406680 + AluJb SINE Alu 2 129 -183 35 24 0 0 chr12 4875809 4875851 -139406638 + AT_rich Low_complexity Low_complexity 1 42 0 1805 169 21 0 chr12 4879294 4879584 -139402905 - AluJo SINE Alu -16 296 1 499 159 104 99 chr12 4879708 4879890 -139402599 + LTR41 LTR ERVL 1 183 -590 405 196 82 44 chr12 4879987 4880145 -139402344 + LTR41 LTR ERVL 604 767 -6 217 235 20 0 chr12 4880148 4880199 -139402290 + L2 LINE L2 3261 3312 -1 198 138 15 62 chr12 4880357 4880422 -139402067 + (TA)n Simple_repeat Simple_repeat 2 63 0 225 235 0 39 chr12 4880962 4881013 -139401476 + L2 LINE L2 3223 3271 -1 190 324 15 15 chr12 4881435 4881503 -139400986 + L2 LINE L2 2397 2464 -850 3162 57 0 37 chr12 4881961 4882343 -139400146 - L1PA6 LINE L1 0 6154 5788 2561 68 0 0 chr12 4882343 4882654 -139399835 - AluY SINE Alu 0 311 1 3162 57 0 37 chr12 4882654 4882707 -139399782 - L1PA6 LINE L1 -366 5788 5735 494 312 0 48 chr12 4883304 4883490 -139398999 - MER5B DNA MER1_type 0 178 2 667 145 73 0 chr12 4883601 4883725 -139398764 - AluSg/x SINE Alu -2 307 175 1079 99 31 31 chr12 4883847 4884009 -139398480 - AluSq SINE Alu -108 205 44 209 353 82 85 chr12 4885063 4885392 -139397097 + L2 LINE L2 2945 3272 0 301 300 12 0 chr12 4886023 4886103 -139396386 - MIR3 SINE MIR -19 189 109 210 216 0 39 chr12 4886571 4886622 -139395867 + L2 LINE L2 3263 3311 -2 2007 138 3 7 chr12 4887168 4887465 -139395024 + AluSx SINE Alu 1 296 -16 1232 116 131 6 chr12 4887909 4888338 -139394151 - MER1A DNA MER1_type 0 533 1 2085 114 17 3 chr12 4888928 4889217 -139393272 + AluSx SINE Alu 2 294 -18 2338 93 7 3 chr12 4889321 4889621 -139392868 - AluSx SINE Alu -11 301 1 311 197 70 14 chr12 4889621 4889692 -139392797 + MIR3 SINE MIR 127 201 -7 279 295 162 46 chr12 4889754 4889927 -139392562 - MIR SINE MIR -50 212 20 826 171 0 0 chr12 4889930 4890059 -139392430 + FLAM_C SINE Alu 2 130 -3 517 276 167 14 chr12 4890925 4891146 -139391343 - L2 LINE L2 -163 3150 2896 311 309 111 37 chr12 4891311 4891473 -139391016 + MIR3 SINE MIR 21 194 -14 279 274 97 9 chr12 4892108 4892221 -139390268 + MIR SINE MIR 84 206 -56 310 364 29 17 chr12 4892589 4892762 -139389727 + MER5B DNA MER1_type 1 175 -3 185 313 75 0 chr12 4892943 4893010 -139389479 - MIR SINE MIR 0 262 191 205 283 0 0 chr12 4893568 4893621 -139388868 - MIR SINE MIR 0 262 210 29 28 0 0 chr12 4893672 4893708 -139388781 + AT_rich Low_complexity Low_complexity 1 36 0 267 262 12 24 chr12 4893877 4893961 -139388528 - MIR SINE MIR 0 262 180 219 357 83 0 chr12 4893957 4894041 -139388448 + L2 LINE L2 3146 3236 -36 * 280 270 90 0 chr12 4894116 4894205 -139388284 - MIR SINE MIR -6 256 160 1861 293 181 20 chr12 4894207 4895216 -139387273 + L2 LINE L2 923 2094 -1220 248 291 9 64 chr12 4895232 4895342 -139387147 + MIR SINE MIR 158 261 -1 820 307 98 9 chr12 4895730 4896046 -139386443 + L3 LINE CR1 1171 1514 -63 1140 220 5 0 chr12 4897646 4897864 -139384625 - MER58A DNA MER1_type -5 219 1 1455 136 136 7 chr12 4897872 4898158 -139384331 + MER33 DNA MER1_type 1 323 -1 405 238 57 8 chr12 4898356 4898478 -139384011 + MER20B DNA MER1_type 65 192 -591 341 269 213 6 chr12 4899236 4899396 -139383093 - MIR SINE MIR -41 221 29 249 292 0 0 chr12 4899533 4899598 -139382891 + CT-rich Low_complexity Low_complexity 3 67 0 213 264 14 42 chr12 4900532 4900604 -139381885 + L3 LINE CR1 908 977 -600 233 325 12 36 chr12 4900946 4901029 -139381460 + L2 LINE L2 3187 3267 -5 26 50 0 0 chr12 4901250 4901290 -139381199 + AT_rich Low_complexity Low_complexity 1 40 0 864 138 0 36 chr12 4901290 4901428 -139381061 - FLAM_C SINE Alu 0 133 1 326 318 0 12 chr12 4902410 4902495 -139379994 - L2 LINE L2 0 3313 3230 2536 323 78 44 chr12 4902544 4902704 -139379785 - L2 LINE L2 -790 2524 2371 845 230 17 0 chr12 4902704 4902878 -139379611 + MER5B DNA MER1_type 1 177 -1 2536 323 78 44 chr12 4902878 4904614 -139377875 - L2 LINE L2 -943 2371 564 301 189 122 14 chr12 4905376 4905450 -139377039 + MIR SINE MIR 20 101 -107 1404 146 3 24 chr12 4905455 4905740 -139376749 - L1MC2 LINE L1 -282 6062 5785 225 108 0 0 chr12 4905845 4905882 -139376607 - L1MB3 LINE L1 -7 6176 6140 1539 196 33 48 chr12 4905883 4906275 -139376214 + MLT1B LTR MaLR 1 386 -4 708 123 9 0 chr12 4906279 4906393 -139376096 + MLT1B-int LTR MaLR 1 115 -1256 * 2294 193 11 11 chr12 4906384 4906856 -139375633 + MLT1B-int LTR MaLR 260 731 -640 279 261 0 0 chr12 4906968 4907033 -139375456 + MLT1B-int LTR MaLR 678 742 -993 294 312 0 0 chr12 4907246 4907323 -139375166 + MLT1B-int LTR MaLR 1286 1362 -373 1386 181 47 4 chr12 4907383 4907659 -139374830 + MLT1B-int LTR MaLR 1372 1659 -76 * 4164 170 38 31 chr12 4907657 4908347 -139374142 - L1MB2 LINE L1 -39 6132 5449 1541 190 34 17 chr12 4908347 4908642 -139373847 - AluJo SINE Alu -11 301 2 4164 170 38 31 chr12 4908642 4909519 -139372970 - L1MB2 LINE L1 -722 5449 4550 936 174 214 86 chr12 4909519 4909870 -139372619 - MSTD LTR MaLR 0 396 1 4164 170 38 31 chr12 4909870 4910040 -139372449 - L1MB2 LINE L1 -1621 4550 4383 2371 94 0 0 chr12 4910051 4910348 -139372141 - AluSg SINE Alu -13 297 1 189 132 0 0 chr12 4910371 4910409 -139372080 + (A)n Simple_repeat Simple_repeat 1 38 0 617 286 59 79 chr12 4911234 4911616 -139370873 - L2 LINE L2 0 3272 2903 932 176 69 5 chr12 4911622 4911810 -139370679 - MER20 DNA MER1_type 0 219 20 282 183 17 0 chr12 4911817 4911877 -139370612 - MER116 DNA Mariner -19 61 1 269 158 35 0 chr12 4912155 4912212 -139370277 + CT-rich Low_complexity Low_complexity 4 62 0 197 182 247 13 chr12 4912478 4912555 -139369934 + MER5B DNA MER1_type 84 178 0 1516 234 133 6 chr12 4913810 4914470 -139368019 + L1MB8 LINE L1 4259 5023 -1123 29993 99 29 59 chr12 4914488 4920832 -139361657 + L1PA7 LINE L1 12 6154 0 3057 211 75 13 chr12 4920873 4921951 -139360538 + L1MB8 LINE L1 5022 6164 -14 1206 302 130 46 chr12 4922063 4922997 -139359492 - L2 LINE L2 -1295 2019 1008 313 255 143 37 chr12 4923951 4924112 -139358377 + L1ME4a LINE L1 5355 5532 -2276 30 45 0 0 chr12 4924118 4924162 -139358327 + AT_rich Low_complexity Low_complexity 1 44 0 554 274 88 9 chr12 4924174 4924492 -139357997 + L1ME4a LINE L1 5545 5887 -234 327 232 203 22 chr12 4924534 4924672 -139357817 + L1ME4a LINE L1 5956 6118 -3 1574 159 4 30 chr12 4925323 4925594 -139356895 + AluJo SINE Alu 1 264 -48 877 167 0 0 chr12 4925599 4925731 -139356758 + FLAM_A SINE Alu 2 133 0 370 218 0 39 chr12 4925923 4926001 -139356488 - L2 LINE L2 0 3313 3239 402 246 55 0 chr12 4926323 4926433 -139356056 + L2 LINE L2 3193 3308 -5 187 282 218 9 chr12 4926431 4926541 -139355948 - L2 LINE L2 -1344 1970 1838 * 748 192 0 0 chr12 4927028 4927153 -139355336 + FLAM_A SINE Alu 2 126 -7 706 286 87 49 chr12 4927922 4928391 -139354098 + L2 LINE L2 1485 1971 -1343 23 0 0 0 chr12 4930069 4930092 -139352397 + AT_rich Low_complexity Low_complexity 1 23 0 187 343 45 0 chr12 4930447 4930514 -139351975 + MIR SINE MIR 69 138 -70 521 254 60 38 chr12 4930659 4930737 -139351752 + MER5A DNA MER1_type 1 76 -113 1767 164 20 13 chr12 4930737 4931036 -139351453 + AluJo SINE Alu 1 301 -11 521 254 60 38 chr12 4931036 4931142 -139351347 + MER5A DNA MER1_type 76 189 0 489 315 6 6 chr12 4931147 4931309 -139351180 + MER5A DNA MER1_type 25 186 -3 1061 167 68 4 chr12 4931522 4931756 -139350733 - L1MA4 LINE L1 -9 6291 6043 5547 45 6 0 chr12 4931838 4932477 -139350012 - SVA Other Other 0 1386 744 1847 121 0 24 chr12 4932961 4933276 -139349213 + AluSg SINE Alu 1 308 0 818 249 58 29 chr12 4933573 4933814 -139348675 + MIR SINE MIR 14 261 -1 241 313 125 18 chr12 4933901 4934013 -139348476 - MIR SINE MIR -115 147 24 1291 179 67 82 chr12 4934368 4934686 -139347803 - MER67C LTR ERV1 -234 280 67 2405 155 47 0 chr12 4934686 4935092 -139347397 + MSTA LTR MaLR 1 425 -3 1291 179 67 82 chr12 4935092 4935156 -139347333 - MER67C LTR ERV1 -447 67 3 793 107 25 0 chr12 4935349 4935470 -139347019 - MSTB1 LTR MaLR 0 432 309 995 88 0 0 chr12 4935541 4935666 -139346823 + AluJb SINE Alu 1 125 -187 273 234 182 0 chr12 4935689 4935766 -139346723 + L2 LINE L2 3221 3311 -2 928 175 200 66 chr12 4936541 4936906 -139345583 + LTR37A LTR ERV1 12 425 -1 504 260 49 29 chr12 4936937 4937141 -139345348 - Charlie8 DNA MER1_type -2194 223 16 241 273 265 0 chr12 4937204 4937336 -139345153 - MIR SINE MIR -48 214 48 1301 146 106 17 chr12 4937580 4937881 -139344608 - LTR56 LTR ERV1 -117 328 1 2375 86 3 3 chr12 4937993 4938296 -139344193 + AluSp SINE Alu 1 303 -10 207 315 63 45 chr12 4938452 4938563 -139343926 - MIR SINE MIR -142 120 8 2241 146 3 11 chr12 4939263 4939632 -139342857 - MER47A DNA MER2_type 0 366 1 413 270 117 0 chr12 4939812 4939975 -139342514 - L1ME LINE L1 -404 5717 5536 3697 187 71 35 chr12 4940246 4940292 -139342197 - MER21B LTR ERV1 -32 831 788 441 0 0 0 chr12 4940292 4940341 -139342148 + (TG)n Simple_repeat Simple_repeat 2 50 0 3697 187 71 35 chr12 4940341 4940743 -139341746 - MER21B LTR ERV1 -75 788 402 2912 108 35 15 chr12 4940743 4940766 -139341723 + MER4C LTR ERV1 1 22 -443 2443 87 0 3 chr12 4940766 4941077 -139341412 + AluY SINE Alu 1 310 -1 2912 108 35 15 chr12 4941077 4941508 -139340981 + MER4C LTR ERV1 22 464 -1 3697 187 71 35 chr12 4941508 4941768 -139340721 - MER21B LTR ERV1 -461 402 87 1598 161 113 0 chr12 4941768 4942042 -139340447 + AluJb SINE Alu 2 306 -6 3697 187 71 35 chr12 4942042 4942133 -139340356 - MER21B LTR ERV1 -776 87 1 1025 258 16 12 chr12 4942444 4942700 -139339789 + MIR SINE MIR 6 262 0 445 319 126 40 chr12 4942981 4943749 -139338740 - L2 LINE L2 -5 3267 2365 666 0 0 0 chr12 4944667 4944741 -139337748 + (CCA)n Simple_repeat Simple_repeat 2 75 0 246 229 0 0 chr12 4945126 4945187 -139337302 - L1ME LINE L1 -520 5644 5584 * 377 226 105 0 chr12 4945182 4945246 -139337243 - L1ME LINE L1 -3485 2661 2605 2538 192 79 29 chr12 4945246 4945840 -139336649 + MLT1E2 LTR MaLR 1 624 -2 377 226 105 0 chr12 4945840 4945956 -139336533 - L1ME LINE L1 -3541 2605 2462 889 159 0 14 chr12 4945998 4946143 -139336346 - FLAM_C SINE Alu 0 143 1 2209 154 130 0 chr12 4946144 4946559 -139335930 - LTR44 LTR ERV1 -26 493 25 2316 85 7 0 chr12 4946561 4946854 -139335635 + AluSg SINE Alu 1 295 -15 614 202 8 83 chr12 4946896 4947148 -139335341 - L1ME LINE L1 -3680 2466 2234 1004 133 0 0 chr12 4947148 4947298 -139335191 + L1PA15 LINE L1 6013 6162 -3 470 184 0 0 chr12 4947366 4947453 -139335036 - MER58B DNA MER1_type 0 341 255 2470 156 128 32 chr12 4947507 4947576 -139334913 + L1MCa LINE L1 29 90 -6336 2432 75 0 3 chr12 4947576 4947884 -139334605 + AluSg SINE Alu 1 307 -3 2470 156 128 32 chr12 4947884 4948367 -139334122 + L1MCa LINE L1 90 634 -5792 4229 150 27 16 chr12 4948386 4949249 -139333240 + L1MCa LINE L1 834 1794 -4632 6669 219 31 77 chr12 4949260 4951148 -139331341 + L1MCa LINE L1 2684 4657 -1769 1355 35 0 99 chr12 4951148 4951350 -139331139 + L1PA3 LINE L1 5974 6155 0 6669 219 31 77 chr12 4951350 4951905 -139330584 + L1MCa LINE L1 4657 5010 -1416 2212 122 0 19 chr12 4951905 4952217 -139330272 - AluSx SINE Alu -6 306 1 6669 219 31 77 chr12 4952217 4952304 -139330185 + L1MCa LINE L1 5010 5099 -1327 198 103 0 0 chr12 4952649 4952678 -139329811 + (CAA)n Simple_repeat Simple_repeat 2 30 0 394 349 42 12 chr12 4953330 4953496 -139328993 + MIR SINE MIR 86 256 -6 536 190 132 25 chr12 4953615 4953736 -139328753 - FLAM_A SINE Alu -8 134 1 237 267 20 30 chr12 4954435 4954536 -139327953 - L1ME4a LINE L1 -55 6066 5967 559 216 0 16 chr12 4954617 4954742 -139327747 - L1MD3 LINE L1 -1112 6883 6761 381 75 0 0 chr12 4955789 4955842 -139326647 + (TG)n Simple_repeat Simple_repeat 2 54 0 1466 185 24 31 chr12 4955842 4956129 -139326360 - AluJb SINE Alu -27 285 1 407 274 213 5 chr12 4956170 4956367 -139326122 - MIR SINE MIR -5 257 20 242 296 0 20 chr12 4956443 4956541 -139325948 - L1ME4a LINE L1 -335 5786 5691 729 197 0 0 chr12 4956622 4956739 -139325750 + AluJo/FLAM SINE Alu 2 118 -194 2196 124 0 0 chr12 4956739 4957045 -139325444 - AluY SINE Alu -5 306 1 27 0 0 0 chr12 4957050 4957077 -139325412 + AT_rich Low_complexity Low_complexity 1 27 0 207 100 0 0 chr12 4957133 4957163 -139325326 + (CA)n Simple_repeat Simple_repeat 2 31 0 321 317 46 42 chr12 4957307 4957478 -139325011 + MER5A DNA MER1_type 20 178 0 23 0 0 0 chr12 4957679 4957702 -139324787 + AT_rich Low_complexity Low_complexity 1 23 0 364 183 37 90 chr12 4957913 4958051 -139324438 - L1MC4 LINE L1 -1 8037 7685 357 150 1 68 chr12 4958177 4958324 -139324165 - L1MD2 LINE L1 -97 7711 6055 * 6903 174 139 98 chr12 4958322 4959039 -139323450 - L1MDa LINE L1 -4204 2336 1650 2162 112 6 34 chr12 4959039 4959361 -139323128 - AluSq SINE Alu 0 313 1 6903 174 139 98 chr12 4959361 4959836 -139322653 - L1MDa LINE L1 -4890 1650 1196 2004 143 0 7 chr12 4959836 4960130 -139322359 - AluJb SINE Alu -15 297 6 6903 174 139 98 chr12 4960130 4960151 -139322338 - L1MDa LINE L1 -5344 1196 1177 841 121 0 38 chr12 4960151 4960283 -139322206 - FLAM_C SINE Alu -16 127 1 6903 174 139 98 chr12 4960283 4961178 -139321311 - L1MDa LINE L1 -5363 1177 3 2299 95 0 6 chr12 4961180 4961495 -139320994 - AluSq SINE Alu 0 313 1 4750 29 41 39 chr12 4962546 4963132 -139319357 - LTR14C LTR ERVK 0 587 1 7785 75 2 3 chr12 4963769 4964738 -139317751 - LTR5 LTR ERVK 0 969 2 421 198 51 108 chr12 4964834 4964991 -139317498 + MIR SINE MIR 28 175 -87 347 292 7 52 chr12 4965352 4965572 -139316917 + GA-rich Low_complexity Low_complexity 1 209 0 2649 46 3 0 chr12 4966407 4966714 -139315775 + AluY SINE Alu 1 308 -3 340 239 11 45 chr12 4967400 4967488 -139315001 + MER91 DNA MER1_type 57 141 -55 237 350 0 0 chr12 4967548 4967608 -139314881 + MER91 DNA MER1_type 131 190 0 357 293 53 23 chr12 4967946 4968079 -139314410 - MER5A DNA MER1_type 0 189 53 * 403 253 53 11 chr12 4967991 4968086 -139314403 + MER5A DNA MER1_type 56 154 -35 2616 63 0 0 chr12 4968089 4968392 -139314097 - AluSg SINE Alu -7 303 1 276 336 16 33 chr12 4968649 4968771 -139313718 - MER5A DNA MER1_type -68 121 2 271 82 131 49 chr12 4969652 4969713 -139312776 - MIR SINE MIR -66 142 77 195 252 35 78 chr12 4969713 4969767 -139312722 + L2 LINE L2 1396 1505 -1809 4680 191 28 27 chr12 4969874 4971699 -139310790 - L1MB8 LINE L1 0 6178 4351 * 8180 167 51 15 chr12 4971685 4973394 -139309095 - L1MA6 LINE L1 0 6300 4478 2124 54 104 4 chr12 4973394 4973674 -139308815 - AluY SINE Alu -3 308 1 8180 167 51 15 chr12 4973674 4974389 -139308100 - L1MA6 LINE L1 -1822 4478 3790 822 238 29 0 chr12 4974423 4974595 -139307894 - MER45A DNA AcHobo 0 178 2 441 152 0 0 chr12 4974950 4975016 -139307473 - MER3 DNA MER1_type 0 209 144 441 152 0 0 chr12 4975119 4975185 -139307304 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 4975288 4975354 -139307135 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 4975457 4975523 -139306966 - MER3 DNA MER1_type 0 209 144 1017 218 35 0 chr12 4975626 4975828 -139306661 - MER3 DNA MER1_type 0 209 1 461 327 82 14 chr12 4976302 4976522 -139305967 + L2 LINE L2 2181 2415 -899 192 328 16 0 chr12 4976613 4976677 -139305812 - MIR SINE MIR -47 215 151 205 179 0 0 chr12 4976678 4976717 -139305772 + (CTA)n Simple_repeat Simple_repeat 1 39 0 357 259 191 38 chr12 4976859 4976990 -139305499 + MER5A DNA MER1_type 33 183 -6 307 363 8 0 chr12 4977134 4977258 -139305231 + L2 LINE L2 2624 2748 -566 2571 266 35 65 chr12 4977687 4978696 -139303793 + L1M4b LINE L1 12 1214 -5645 254 255 0 0 chr12 4978867 4978914 -139303575 + L1M4 LINE L1 915 961 -5894 * 260 229 0 0 chr12 4978888 4978936 -139303553 + L1M4 LINE L1 1177 1224 -5635 224 119 0 24 chr12 4979108 4979150 -139303339 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 1495 235 35 47 chr12 4979163 4979627 -139302862 + L1M4 LINE L1 1217 1674 -5185 3159 154 65 28 chr12 4979627 4980148 -139302341 + L1MCa LINE L1 20 565 -5861 1478 209 72 49 chr12 4980148 4980535 -139301954 + MSTD LTR MaLR 1 396 0 3159 154 65 28 chr12 4980535 4980583 -139301906 + L1MCa LINE L1 565 610 -5816 228 214 0 0 chr12 4980588 4980630 -139301859 + L1MCa LINE L1 570 611 -5815 1964 179 71 15 chr12 4980660 4981125 -139301364 + L1M4 LINE L1 4840 5330 -816 339 183 84 0 chr12 4981132 4981203 -139301286 + L1MA10 LINE L1 6180 6256 -78 206 316 0 0 chr12 4981235 4981292 -139301197 + MIR SINE MIR 201 257 -5 24 32 0 0 chr12 4981658 4981689 -139300800 + AT_rich Low_complexity Low_complexity 1 31 0 324 345 70 6 chr12 4981999 4982170 -139300319 - MIR SINE MIR -49 213 32 2286 102 0 10 chr12 4982191 4982505 -139299984 - AluY SINE Alu 0 311 1 381 320 85 25 chr12 4982738 4982938 -139299551 + MIR SINE MIR 14 225 -37 * 785 237 14 50 chr12 4982936 4982963 -139299526 - MIR SINE MIR -44 218 192 2158 134 0 0 chr12 4982963 4983262 -139299227 - AluSq SINE Alu -14 299 1 785 237 14 50 chr12 4983262 4983453 -139299036 - MIR SINE MIR -70 192 8 303 311 67 15 chr12 4983544 4983679 -139298810 + L3b LINE CR1 1319 1460 -123 220 333 31 10 chr12 4983994 4984090 -139298399 + MIR3 SINE MIR 62 159 -49 551 253 40 13 chr12 4984550 4984700 -139297789 + MIR SINE MIR 72 225 -37 209 266 62 0 chr12 4984957 4985021 -139297468 - L2 LINE L2 -1 3312 3245 676 153 53 46 chr12 4985554 4985685 -139296804 - AluJo SINE Alu -176 136 5 695 229 21 21 chr12 4986129 4986317 -139296172 + MIR SINE MIR 10 197 -65 246 114 0 0 chr12 4986774 4986809 -139295680 + MIR SINE MIR 204 238 -24 410 314 43 22 chr12 4987399 4987584 -139294905 + MIR3 SINE MIR 10 198 -10 192 397 0 0 chr12 4988532 4988610 -139293879 - L2 LINE L2 -197 3075 2998 919 148 0 15 chr12 4989315 4989450 -139293039 + FLAM_C SINE Alu 1 133 0 7565 201 36 12 chr12 4989612 4992717 -139289772 - L1MA2 LINE L1 0 7723 4540 5070 86 32 10 chr12 4992717 4993401 -139289088 - L1PA13 LINE L1 0 6163 5465 2599 147 2 0 chr12 4993401 4993823 -139288666 + L1P LINE L1 4726 5148 -998 * 20544 155 49 18 chr12 4993819 4998217 -139284272 - L1MA2 LINE L1 -3012 4553 19 240 295 121 27 chr12 4998346 4998626 -139283863 - MLT1I LTR MaLR -33 376 103 183 320 100 30 chr12 4998830 4998930 -139283559 + MIR SINE MIR 13 119 -143 221 288 34 0 chr12 4998934 4998993 -139283496 + L2 LINE L2 3238 3298 -15 2051 145 32 42 chr12 4999400 4999779 -139282710 + THE1C LTR MaLR 1 375 0 886 258 31 16 chr12 4999925 5000276 -139282213 - MLT1J LTR MaLR -31 480 77 183 286 0 0 chr12 5000927 5000969 -139281520 - L2 LINE L2 -16 3256 3215 314 219 16 0 chr12 5000982 5001046 -139281443 + MIR SINE MIR 43 107 -155 288 0 0 0 chr12 5001145 5001177 -139281312 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 360 0 0 0 chr12 5001176 5001216 -139281273 + (GA)n Simple_repeat Simple_repeat 1 40 0 2295 107 3 0 chr12 5001315 5001614 -139280875 - AluSx SINE Alu -12 300 1 228 291 18 18 chr12 5002030 5002085 -139280404 - MIR SINE MIR -188 74 20 2569 192 92 31 chr12 5002552 5003108 -139279381 - MLT1E LTR MaLR -3 590 1 646 233 70 57 chr12 5003832 5004060 -139278429 - MIR SINE MIR -30 232 2 487 157 209 52 chr12 5004147 5004262 -139278227 - FLAM_C SINE Alu 0 133 1 2990 123 14 2 chr12 5005314 5005743 -139276746 - MER57B LTR ERV1 0 434 1 2339 72 0 28 chr12 5007070 5007390 -139275099 - AluY SINE Alu 0 311 1 239 272 58 29 chr12 5007488 5007591 -139274898 - MIR SINE MIR -64 144 39 216 0 0 0 chr12 5007891 5007915 -139274574 + (T)n Simple_repeat Simple_repeat 1 24 0 326 143 54 0 chr12 5008098 5008195 -139274294 - AluSg SINE Alu 0 322 223 1526 115 34 26 chr12 5008374 5008608 -139273881 - AluSg SINE Alu -73 237 2 554 327 12 0 chr12 5008836 5009001 -139273488 + MIR SINE MIR 95 261 -1 476 282 107 43 chr12 5009047 5009327 -139273162 + L3 LINE CR1 799 1096 -481 619 334 87 48 chr12 5009524 5009940 -139272549 + L2 LINE L2 2840 3271 -1 444 305 17 77 chr12 5010006 5010239 -139272250 + L3 LINE CR1 1267 1485 -92 221 329 13 0 chr12 5010368 5010447 -139272042 + MIR SINE MIR 183 262 0 25 0 0 0 chr12 5010526 5010551 -139271938 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr12 5010903 5010931 -139271558 + AT_rich Low_complexity Low_complexity 1 28 0 387 276 85 92 chr12 5011787 5012221 -139270268 + L1ME4a LINE L1 5501 5931 -190 36 40 0 0 chr12 5012225 5012275 -139270214 + AT_rich Low_complexity Low_complexity 1 50 0 2172 112 0 10 chr12 5012555 5012869 -139269620 + AluSx SINE Alu 1 311 -1 477 333 67 28 chr12 5013075 5013255 -139269234 - MIR SINE MIR -5 257 71 341 321 28 0 chr12 5014354 5014460 -139268029 - MIR SINE MIR -128 134 26 2780 212 107 26 chr12 5016528 5017407 -139265082 + L1MC4a LINE L1 5329 5535 -643 1017 205 107 29 chr12 5017423 5017667 -139264822 + L1MC4 LINE L1 6754 7016 -1026 * 2340 173 60 24 chr12 5017665 5018163 -139264326 + L1MC4 LINE L1 7355 7870 -172 193 206 14 14 chr12 5018172 5018245 -139264244 + (TGGA)n Simple_repeat Simple_repeat 4 76 0 489 193 57 36 chr12 5018256 5018396 -139264093 + L1MC4 LINE L1 7900 8042 0 3442 219 28 28 chr12 5020357 5021179 -139261310 - MER99 DNA DNA -5 823 2 465 283 85 40 chr12 5024716 5024939 -139257550 - L1ME4a LINE L1 0 6121 5889 2270 77 0 7 chr12 5024939 5025236 -139257253 - AluY SINE Alu -16 295 1 1493 146 49 42 chr12 5025236 5025523 -139256966 - AluJo SINE Alu -7 305 17 511 308 73 13 chr12 5025918 5026126 -139256363 - MIR SINE MIR -1 261 43 925 137 0 0 chr12 5026216 5026347 -139256142 + FLAM_C SINE Alu 2 132 -1 1045 191 5 19 chr12 5026423 5026638 -139255851 - MER51C LTR ERV1 0 640 429 21 57 0 0 chr12 5026939 5026974 -139255515 + AT_rich Low_complexity Low_complexity 1 35 0 199 290 140 21 chr12 5027588 5027681 -139254808 + L2 LINE L2 3167 3270 -2 784 215 91 94 chr12 5027714 5028086 -139254403 - MLT1D LTR MaLR -134 371 1 254 296 231 22 chr12 5028146 5028467 -139254022 - L2 LINE L2 -16 3256 2869 188 317 58 8 chr12 5028508 5028628 -139253861 - L2 LINE L2 -467 2847 2722 505 267 27 20 chr12 5029036 5029182 -139253307 + MIR SINE MIR 1 147 -115 1377 266 58 28 chr12 5029182 5029611 -139252878 - MLT1J2 LTR MaLR 0 450 9 186 324 40 14 chr12 5029633 5029707 -139252782 + MIR SINE MIR 166 241 -21 224 30 30 0 chr12 5029710 5029743 -139252746 + (TG)n Simple_repeat Simple_repeat 1 34 0 303 309 55 9 chr12 5031338 5031448 -139251041 + MIR SINE MIR 47 161 -101 340 292 32 42 chr12 5031620 5031781 -139250708 + MIR SINE MIR 31 184 -60 2170 106 0 7 chr12 5032112 5032415 -139250074 - AluSx SINE Alu -11 301 1 1634 139 52 14 chr12 5032477 5032855 -139249634 + AluJb SINE Alu 1 389 0 477 230 86 33 chr12 5032915 5033067 -139249422 - L2 LINE L2 -2 3311 3152 4199 179 61 45 chr12 5033067 5033195 -139249294 + L1MB8 LINE L1 4915 5039 -1139 1899 146 0 16 chr12 5033195 5033530 -139248959 + AluSx SINE Alu 1 312 0 4199 179 61 45 chr12 5033530 5034647 -139247842 + L1MB8 LINE L1 5039 6178 0 918 237 158 73 chr12 5034647 5035148 -139247341 - L2 LINE L2 -151 3162 2598 719 261 65 15 chr12 5035148 5035347 -139247142 + MER63A DNA MER1_type 2 210 0 918 237 158 73 chr12 5035347 5035428 -139247061 - L2 LINE L2 -715 2598 2525 472 328 48 11 chr12 5035495 5035684 -139246805 - MER91A DNA MER1_type 0 196 1 211 313 146 28 chr12 5035684 5035821 -139246668 - MIR SINE MIR -84 178 25 233 264 26 0 chr12 5036121 5036203 -139246286 - MIR SINE MIR -81 127 42 260 302 69 35 chr12 5036373 5036489 -139246000 - L2 LINE L2 -1 3271 3152 315 213 0 0 chr12 5037145 5037220 -139245269 + (TG)n Simple_repeat Simple_repeat 2 76 0 293 239 15 0 chr12 5037351 5037418 -139245071 + MIR SINE MIR 48 115 -147 720 229 86 24 chr12 5037424 5037634 -139244855 - MLT1G LTR MaLR -4 586 364 275 152 0 0 chr12 5037666 5037712 -139244777 - MLT2A2 LTR ERVL -2 451 406 3051 104 17 7 chr12 5037748 5038162 -139244327 - MLT2A2 LTR ERVL -35 418 1 502 307 64 0 chr12 5038195 5038335 -139244154 + L2 LINE L2 3123 3271 -1 302 296 157 15 chr12 5039182 5039345 -139243144 - MIR3 SINE MIR -3 205 22 332 119 17 0 chr12 5041160 5041219 -139241270 + CT-rich Low_complexity Low_complexity 1 60 0 293 322 85 0 chr12 5041423 5041541 -139240948 - L2 LINE L2 -2 3270 3143 279 366 85 18 chr12 5041620 5041784 -139240705 + MIR3 SINE MIR 30 204 -4 290 224 104 0 chr12 5042060 5042127 -139240362 - tRNA-Glu-GAG tRNA tRNA 0 75 2 861 145 34 62 chr12 5042250 5042429 -139240060 - AluJo SINE Alu -24 288 115 395 274 42 2 chr12 5042430 5042601 -139239888 + MIR SINE MIR 45 260 -2 1024 287 87 21 chr12 5043009 5043389 -139239100 - MLT1I LTR MaLR -2 407 3 2055 118 10 0 chr12 5045021 5045317 -139237172 - AluSc SINE Alu -10 299 1 1114 289 27 27 chr12 5045359 5045764 -139236725 - MLT1I LTR MaLR -4 405 1 288 0 0 0 chr12 5046342 5046374 -139236115 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr12 5046970 5046994 -139235495 + (CA)n Simple_repeat Simple_repeat 1 24 0 1436 301 101 48 chr12 5047277 5048193 -139234296 + L2 LINE L2 2014 3014 -299 2008 125 0 0 chr12 5048193 5048480 -139234009 - AluSx SINE Alu -25 287 1 1436 301 101 48 chr12 5048480 5048797 -139233692 + L2 LINE L2 3014 3313 0 493 235 61 0 chr12 5049953 5050085 -139232404 + LTR43 LTR ERV1 169 308 -294 274 211 35 0 chr12 5050962 5051019 -139231470 + MIR SINE MIR 204 262 0 24 0 0 0 chr12 5055660 5055684 -139226805 + AT_rich Low_complexity Low_complexity 1 24 0 278 242 68 83 chr12 5055752 5055884 -139226605 + MIR SINE MIR 42 171 -91 258 373 12 6 chr12 5057561 5057722 -139224767 + CT-rich Low_complexity Low_complexity 1 162 0 250 254 120 74 chr12 5058070 5058287 -139224202 + L3b LINE CR1 1115 1341 -242 247 239 0 57 chr12 5058486 5058574 -139223915 + L1MB8 LINE L1 6035 6117 -61 480 18 0 0 chr12 5058788 5058845 -139223644 + (TG)n Simple_repeat Simple_repeat 1 57 0 23 54 0 0 chr12 5059173 5059210 -139223279 + AT_rich Low_complexity Low_complexity 1 37 0 874 223 52 24 chr12 5060853 5061064 -139221425 + MIR SINE MIR 7 223 -39 259 253 40 61 chr12 5061093 5061192 -139221297 - MIR SINE MIR -95 167 71 323 211 42 0 chr12 5061393 5061464 -139221025 - L1MCa LINE L1 -4358 2068 1995 300 304 0 0 chr12 5061464 5061625 -139220864 + (CA)n Simple_repeat Simple_repeat 2 162 0 393 256 185 6 chr12 5062311 5062470 -139220019 + MIR SINE MIR 34 214 -48 493 257 35 0 chr12 5062929 5063042 -139219447 - MIR SINE MIR -62 146 30 414 0 0 0 chr12 5063085 5063131 -139219358 + (CA)n Simple_repeat Simple_repeat 2 47 0 387 0 0 0 chr12 5063957 5064000 -139218489 + (TG)n Simple_repeat Simple_repeat 2 44 0 363 247 67 62 chr12 5064161 5064339 -139218150 + Charlie8 DNA MER1_type 98 276 -2141 2234 105 10 3 chr12 5064378 5064673 -139217816 - AluSq SINE Alu -16 297 1 2173 139 0 0 chr12 5066023 5066333 -139216156 + AluSx SINE Alu 1 310 -2 460 270 82 41 chr12 5066551 5066747 -139215742 + MIR SINE MIR 59 262 0 450 303 56 26 chr12 5067556 5067751 -139214738 - L3b LINE CR1 -118 1465 1265 457 170 28 28 chr12 5067846 5067952 -139214537 - MER103 DNA DNA -47 119 14 217 0 61 0 chr12 5068759 5068792 -139213697 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 266 277 79 20 chr12 5069036 5069137 -139213352 + MIR SINE MIR 18 124 -84 1006 169 13 9 chr12 5069511 5069830 -139212659 + CT-rich Low_complexity Low_complexity 1 320 0 187 256 0 0 chr12 5070441 5070480 -139212009 + MIR SINE MIR 70 108 -100 409 263 39 28 chr12 5070489 5070668 -139211821 - L1ME4a LINE L1 0 6121 5941 306 248 177 9 chr12 5070925 5071038 -139211451 - L1ME4a LINE L1 -355 5766 5635 598 242 223 14 chr12 5071129 5071340 -139211149 - MIR SINE MIR -1 261 7 331 253 58 11 chr12 5071973 5072060 -139210429 - MER5A DNA MER1_type -43 146 56 279 306 33 87 chr12 5072109 5072292 -139210197 - MER5B DNA MER1_type -1 177 5 328 348 27 71 chr12 5074078 5074262 -139208227 - MIR3 SINE MIR -24 184 9 396 329 86 7 chr12 5074348 5074500 -139207989 + MIR SINE MIR 21 184 -78 247 261 22 11 chr12 5075593 5075675 -139206814 - MLT1L LTR MaLR -46 569 487 866 229 238 52 chr12 5075675 5076138 -139206351 - MLT1H LTR MaLR 0 549 1 341 215 13 13 chr12 5076184 5076263 -139206226 - MLT1L LTR MaLR -215 400 322 270 116 0 0 chr12 5076418 5076461 -139206028 + (TTC)n Simple_repeat Simple_repeat 2 44 0 1918 148 3 23 chr12 5076470 5076773 -139205716 - AluJo SINE Alu -15 297 1 233 270 10 40 chr12 5076774 5076874 -139205615 - MLT1L LTR MaLR -502 113 17 3139 133 25 55 chr12 5077635 5077673 -139204816 + LTR36 LTR ERV1 4 42 -569 2606 53 0 0 chr12 5077673 5077972 -139204517 - AluY SINE Alu -12 299 1 3139 133 25 55 chr12 5077972 5078473 -139204016 + LTR36 LTR ERV1 42 526 -85 2264 96 10 32 chr12 5078473 5078787 -139203702 - AluSq SINE Alu -6 307 1 3139 133 25 55 chr12 5078787 5078846 -139203643 + LTR36 LTR ERV1 526 585 -26 225 378 108 14 chr12 5078934 5079156 -139203333 - L2 LINE L2 -206 3066 2824 534 178 43 98 chr12 5079389 5079428 -139203061 - MER97c DNA MER1_type? -912 178 138 4293 168 102 9 chr12 5079428 5080214 -139202275 + MER21B LTR ERV1 2 860 -3 534 178 43 98 chr12 5080214 5080337 -139202152 - MER97c DNA MER1_type? -952 138 25 1383 203 43 48 chr12 5081161 5081535 -139200954 - MLT1B LTR MaLR -18 372 1 2637 141 16 21 chr12 5081717 5082150 -139200339 + Tigger2a DNA MER2_type 2 432 -2 206 253 76 38 chr12 5082322 5082401 -139200088 - MIR SINE MIR -62 200 119 441 0 0 0 chr12 5082734 5082783 -139199706 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1161 91 6 0 chr12 5082836 5083012 -139199477 + L1P4 LINE L1 5305 5481 -684 299 267 206 34 chr12 5083703 5083849 -139198640 + Tigger8 DNA MER2_type 70 240 -426 23 33 0 0 chr12 5083852 5083882 -139198607 + AT_rich Low_complexity Low_complexity 1 30 0 863 256 135 21 chr12 5083911 5084290 -139198199 + Tigger8 DNA MER2_type 244 665 -1 343 353 101 58 chr12 5084457 5084551 -139197938 - L2 LINE L2 -9 3263 3174 450 0 0 0 chr12 5084551 5084601 -139197888 + (TG)n Simple_repeat Simple_repeat 2 51 0 343 353 101 58 chr12 5084601 5084903 -139197586 - L2 LINE L2 -98 3174 2850 1963 139 144 11 chr12 5084980 5085348 -139197141 - MSTA LTR MaLR -11 417 1 390 323 85 11 chr12 5085351 5085611 -139196878 - L2 LINE L2 -586 2728 2450 2642 50 0 0 chr12 5085716 5086018 -139196471 - AluY SINE Alu -9 302 1 522 214 14 77 chr12 5086026 5086084 -139196405 - HAL1 LINE L1 -1 2506 2446 2529 144 34 2 chr12 5086084 5086495 -139195994 - MSTA LTR MaLR -4 424 1 522 214 14 77 chr12 5086495 5086656 -139195833 - HAL1 LINE L1 -61 2446 2301 1005 254 55 89 chr12 5086666 5087244 -139195245 - L2 LINE L2 -20 3293 2754 1317 260 105 42 chr12 5087298 5088005 -139194484 - HAL1 LINE L1 -330 2177 1427 473 199 180 19 chr12 5088065 5088226 -139194263 - MER53 DNA DNA -1 188 2 1117 249 64 82 chr12 5088320 5088466 -139194023 - HAL1 LINE L1 -36 2471 2324 1588 137 116 15 chr12 5088466 5088794 -139193695 - MER46B DNA MER2_type 0 236 1 1117 249 64 82 chr12 5088794 5089304 -139193185 - HAL1 LINE L1 -183 2324 1826 2457 75 0 25 chr12 5089304 5089622 -139192867 - AluY SINE Alu -1 310 1 1117 249 64 82 chr12 5089622 5089671 -139192818 - HAL1 LINE L1 -681 1826 1778 2435 262 107 39 chr12 5089770 5091057 -139191432 - HAL1 LINE L1 -1091 1416 42 1678 85 9 0 chr12 5091084 5091296 -139191193 - AluSp SINE Alu -24 289 76 2076 69 11 25 chr12 5091381 5091697 -139190792 + AluSc SINE Alu 10 321 0 249 83 0 0 chr12 5092019 5092055 -139190434 + (T)n Simple_repeat Simple_repeat 1 36 0 247 246 14 29 chr12 5094370 5094439 -139188050 + L2 LINE L2 3205 3272 0 1061 219 113 124 chr12 5094730 5095675 -139186814 - L2 LINE L2 -1 3312 2405 448 361 21 0 chr12 5096787 5096978 -139185511 + MIR3 SINE MIR 5 199 -9 235 346 40 0 chr12 5097188 5097289 -139185200 + MIR SINE MIR 157 261 -1 233 309 25 0 chr12 5098909 5098990 -139183499 + MIR3 SINE MIR 100 182 -26 2215 80 49 0 chr12 5099662 5099948 -139182541 - AluSp SINE Alu -13 300 1 872 211 33 11 chr12 5100000 5100180 -139182309 - MER5A DNA MER1_type -5 184 1 435 38 0 0 chr12 5101754 5101807 -139180682 + (TG)n Simple_repeat Simple_repeat 1 53 0 222 282 42 28 chr12 5103888 5104030 -139178459 + L2 LINE L2 51 194 -3120 455 282 114 44 chr12 5104038 5104311 -139178178 + L2 LINE L2 3021 3312 -1 600 274 37 6 chr12 5104466 5104630 -139177859 - MIR3 SINE MIR -7 201 33 1294 130 0 0 chr12 5104687 5104864 -139177625 + FRAM SINE Alu 1 172 -4 223 189 38 0 chr12 5106227 5106280 -139176209 + (ATG)n Simple_repeat Simple_repeat 3 57 0 983 284 0 0 chr12 5106294 5106519 -139175970 - MIR SINE MIR -10 252 28 765 213 66 35 chr12 5107102 5107299 -139175190 + MER63A DNA MER1_type 1 203 -7 200 219 0 0 chr12 5107732 5107773 -139174716 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1530 138 0 127 chr12 5108106 5108446 -139174043 - AluJb SINE Alu -15 297 1 479 153 92 0 chr12 5108608 5108706 -139173783 - MIR SINE MIR -96 166 60 3341 157 40 27 chr12 5109442 5110067 -139172422 - L1PA16 LINE L1 -13 6153 5521 964 249 128 41 chr12 5110431 5110845 -139171644 - MLT1J2 LTR MaLR 0 450 1 577 259 15 0 chr12 5111419 5111550 -139170939 - MER94 DNA DNA 0 134 2 23 0 0 0 chr12 5112079 5112102 -139170387 + AT_rich Low_complexity Low_complexity 1 23 0 180 289 0 19 chr12 5112700 5112752 -139169737 - MIR3 SINE MIR -3 205 155 2638 174 131 13 chr12 5112832 5113373 -139169116 - MER6A DNA MER2_type 0 605 1 416 304 81 14 chr12 5114585 5114930 -139167559 + L1M4 LINE L1 2253 2620 -3526 1191 284 130 40 chr12 5115302 5116031 -139166458 + L1M4 LINE L1 3022 3684 -2462 2096 39 75 4 chr12 5116031 5116286 -139166203 - AluY SINE Alu -15 296 24 1191 284 130 40 chr12 5116286 5116600 -139165889 + L1M4 LINE L1 3684 3968 -2178 829 92 8 8 chr12 5116600 5116730 -139165759 + (GAAA)n Simple_repeat Simple_repeat 2 131 0 1191 284 130 40 chr12 5116730 5116916 -139165573 + L1M4 LINE L1 3968 4363 -1783 188 323 99 20 chr12 5118148 5118349 -139164140 - L3b LINE CR1 -25 1558 1342 271 330 32 37 chr12 5118498 5118686 -139163803 + L3 LINE CR1 1056 1242 -335 243 261 118 59 chr12 5119395 5119514 -139162975 + L2 LINE L2 3146 3271 -1 2611 206 17 11 chr12 5119791 5120330 -139162159 + MER74A LTR ERVL 1 542 -16 270 255 78 35 chr12 5120806 5120947 -139161542 - MIR SINE MIR -1 261 115 2104 132 30 30 chr12 5120953 5121316 -139161173 - THE1B LTR MaLR -1 363 1 12103 95 2 2 chr12 5121316 5122897 -139159592 - THE1B-int LTR MaLR 0 1580 1 1016 145 14 104 chr12 5122897 5123118 -139159371 - THE1B LTR MaLR 0 364 164 221 248 34 86 chr12 5123447 5123564 -139158925 + MIR SINE MIR 82 192 -70 453 230 57 109 chr12 5124634 5124836 -139157653 - L1MC5 LINE L1 -45 7916 7736 2563 47 0 28 chr12 5124836 5125156 -139157333 - AluY SINE Alu 0 311 1 453 230 57 109 chr12 5125156 5125284 -139157205 - L1MC5 LINE L1 -225 7736 7603 194 327 0 0 chr12 5125404 5125459 -139157030 - L2 LINE L2 -12 3301 3247 276 374 14 14 chr12 5125467 5125606 -139156883 - MIR SINE MIR -117 145 7 309 222 152 10 chr12 5125720 5125819 -139156670 + MIR SINE MIR 32 144 -118 925 264 35 35 chr12 5126265 5126583 -139155906 - L1MA9 LINE L1 -38 6274 5957 1649 163 3 37 chr12 5126805 5127100 -139155389 - AluJo SINE Alu -19 293 9 210 71 0 0 chr12 5127673 5127701 -139154788 + (CGTG)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr12 5127720 5127740 -139154749 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr12 5127739 5127766 -139154723 + (GA)n Simple_repeat Simple_repeat 2 28 0 218 286 14 0 chr12 5127836 5127906 -139154583 - L3b LINE CR1 -180 1403 1333 255 219 0 16 chr12 5128121 5128185 -139154304 + CT-rich Low_complexity Low_complexity 2 64 0 687 294 107 44 chr12 5128881 5129433 -139153056 + L1MEd LINE L1 529 1126 -4993 2636 39 7 3 chr12 5129433 5129740 -139152749 + AluY SINE Alu 1 308 -3 687 294 107 44 chr12 5129740 5129806 -139152683 + L1MEd LINE L1 1126 1186 -4933 511 238 142 27 chr12 5129807 5130191 -139152298 + L1MEd LINE L1 1242 1635 -4494 * 1508 269 121 37 chr12 5130190 5130872 -139151617 + L1MB3 LINE L1 3139 3762 -2384 1685 182 30 43 chr12 5130872 5131240 -139151249 + MLT1A1 LTR MaLR 1 363 -2 1508 269 121 37 chr12 5131240 5131809 -139150680 + L1MB3 LINE L1 3762 4496 -1650 4288 204 56 38 chr12 5131944 5132481 -139150008 + L1MB3 LINE L1 4732 5258 -925 512 65 0 130 chr12 5132481 5132573 -139149916 + MADE1 DNA Mariner 1 80 0 4288 204 56 38 chr12 5132573 5133476 -139149013 + L1MB3 LINE L1 5258 6183 0 802 289 76 23 chr12 5133468 5133863 -139148626 + L1ME3A LINE L1 5427 5842 -328 * 1914 123 82 21 chr12 5133920 5134260 -139148229 - MER46B DNA MER2_type 0 236 1 26 30 0 0 chr12 5134490 5134523 -139147966 + AT_rich Low_complexity Low_complexity 1 33 0 2390 89 0 0 chr12 5136966 5137259 -139145230 + AluSc SINE Alu 1 293 -16 201 156 0 0 chr12 5137924 5137956 -139144533 + (TATG)n Simple_repeat Simple_repeat 3 34 0 739 229 58 39 chr12 5138488 5138515 -139143974 + MER3 DNA MER1_type 1 26 -183 2472 68 0 3 chr12 5138515 5138811 -139143678 + AluY SINE Alu 1 295 -16 739 229 58 39 chr12 5138811 5138988 -139143501 + MER3 DNA MER1_type 26 209 0 7300 124 48 10 chr12 5139940 5140189 -139142300 - Tigger3b DNA MER2_type -1816 1212 974 1936 148 3 13 chr12 5140189 5140492 -139141997 + AluJb SINE Alu 6 305 -7 7300 124 48 10 chr12 5140492 5141408 -139141081 - Tigger3b DNA MER2_type -2054 974 3 360 311 97 48 chr12 5141555 5142101 -139140388 + L2 LINE L2 1333 1905 -1409 186 231 0 0 chr12 5142183 5142222 -139140267 + L2 LINE L2 2432 2470 -844 585 310 54 71 chr12 5142320 5142801 -139139688 + MLT1K LTR MaLR 109 581 -7 310 325 68 12 chr12 5142890 5143053 -139139436 - MLT1L LTR MaLR -34 581 410 375 342 59 78 chr12 5143372 5143846 -139138643 + L2 LINE L2 2804 3268 -4 993 193 140 8 chr12 5144074 5144317 -139138172 - L1ME1 LINE L1 -6 6229 5955 * 4282 222 107 28 chr12 5144298 5145548 -139136941 - L1ME1 LINE L1 -781 5434 4055 243 0 0 0 chr12 5145548 5145575 -139136914 + (TG)n Simple_repeat Simple_repeat 2 28 0 4282 222 107 28 chr12 5145575 5145753 -139136736 - L1ME1 LINE L1 -2160 4055 3893 810 301 52 19 chr12 5145775 5146084 -139136405 - L1ME1 LINE L1 -5939 457 139 2292 90 0 7 chr12 5146505 5146844 -139135645 + AluY SINE Alu 1 311 0 2136 279 128 26 chr12 5147314 5147439 -139135050 + L2 LINE L2 1216 1327 -1987 2166 138 3 0 chr12 5147439 5147750 -139134739 - AluSx SINE Alu 0 312 1 2136 279 128 26 chr12 5147750 5148550 -139133939 + L2 LINE L2 1327 2263 -1051 889 173 152 11 chr12 5148550 5148741 -139133748 + MER20 DNA MER1_type 2 219 0 2136 279 128 26 chr12 5148741 5148864 -139133625 + L2 LINE L2 2263 2372 -942 267 287 30 48 chr12 5148865 5149032 -139133457 - LTR16C LTR ERVL 0 491 328 766 322 173 8 chr12 5149535 5150300 -139132189 + L2 LINE L2 2407 3313 0 621 219 0 24 chr12 5150350 5150473 -139132016 + FRAM SINE Alu 1 115 -61 276 170 0 0 chr12 5150480 5150533 -139131956 + GA-rich Low_complexity Low_complexity 2 54 0 39 38 0 0 chr12 5150960 5151013 -139131476 + AT_rich Low_complexity Low_complexity 1 53 0 23 33 0 0 chr12 5156569 5156599 -139125890 + AT_rich Low_complexity Low_complexity 1 30 0 251 53 0 26 chr12 5156830 5156868 -139125621 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 192 97 0 0 chr12 5161207 5161238 -139121251 + (CAGAGA)n Simple_repeat Simple_repeat 2 32 0 537 233 54 4 chr12 5162177 5162344 -139120145 - MER104 DNA Tc2 -3 177 1 218 150 50 0 chr12 5162949 5162989 -139119500 + L2 LINE L2 3221 3262 -10 198 217 104 87 chr12 5163040 5163082 -139119407 + MIR SINE MIR 87 127 -135 2100 131 7 0 chr12 5163082 5163379 -139119110 - AluSx SINE Alu -13 299 1 198 217 104 87 chr12 5163379 5163451 -139119038 + MIR SINE MIR 127 203 -59 29 0 0 0 chr12 5164000 5164029 -139118460 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr12 5164115 5164140 -139118349 + AT_rich Low_complexity Low_complexity 1 25 0 1753 196 0 3 chr12 5166809 5167110 -139115379 + AluJb SINE Alu 2 301 -11 244 53 53 26 chr12 5168135 5168173 -139114316 + L1PA4 LINE L1 5837 5875 -279 1995 38 8 0 chr12 5168262 5168501 -139113988 + L1PA4 LINE L1 5915 6155 0 1206 258 81 15 chr12 5168510 5168906 -139113583 - LTR16A LTR ERVL -6 444 23 1718 182 24 0 chr12 5170681 5170978 -139111511 + AluJb SINE Alu 5 308 -4 219 234 0 0 chr12 5172013 5172060 -139110429 - L3 LINE CR1 -1 1576 1530 271 363 20 36 chr12 5174164 5174415 -139108074 - L3 LINE CR1 -834 743 497 849 47 0 0 chr12 5175082 5175188 -139107301 + (TTC)n Simple_repeat Simple_repeat 3 108 0 943 254 65 7 chr12 5175192 5175468 -139107021 - MLT1C LTR MaLR -52 415 124 288 137 0 0 chr12 5175864 5175915 -139106574 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 397 254 25 16 chr12 5176543 5176665 -139105824 + MIR3 SINE MIR 7 129 -79 23 78 0 0 chr12 5177501 5177552 -139104937 + AT_rich Low_complexity Low_complexity 1 51 0 2258 76 7 40 chr12 5178130 5178431 -139104058 - AluSg1 SINE Alu -18 291 1 1255 211 102 5 chr12 5179055 5179434 -139103055 - MER63 DNA MER1_type 0 1060 8 421 290 73 38 chr12 5179871 5180299 -139102190 - L2 LINE L2 -193 3079 2627 2204 109 10 19 chr12 5180361 5180674 -139101815 + AluSg SINE Alu 1 310 0 260 266 137 65 chr12 5181544 5181822 -139100667 + L2 LINE L2 2866 3163 -109 954 276 165 13 chr12 5182408 5182902 -139099587 - L2 LINE L2 -49 3264 2696 613 330 95 46 chr12 5183041 5184079 -139098410 - L2 LINE L2 -1 3271 2170 364 223 161 18 chr12 5184587 5184699 -139097790 - MIR3 SINE MIR -66 142 15 1935 109 12 0 chr12 5185304 5185561 -139096928 + AluSq SINE Alu 1 260 -53 232 320 115 0 chr12 5186352 5186474 -139096015 + MIR SINE MIR 119 254 -8 321 356 65 40 chr12 5187225 5187500 -139094989 + L2 LINE L2 2989 3270 -2 2387 176 170 29 chr12 5187620 5188239 -139094250 - L1MB7 LINE L1 -25 6159 5454 192 40 0 0 chr12 5188285 5188310 -139094179 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr12 5188350 5188372 -139094117 + AT_rich Low_complexity Low_complexity 1 22 0 2201 95 7 0 chr12 5188372 5188655 -139093834 - AluSg SINE Alu -24 286 2 2583 150 31 0 chr12 5188732 5189145 -139093344 - MSTB LTR MaLR 0 426 1 183 143 29 0 chr12 5190436 5190471 -139092018 + MIR3 SINE MIR 124 159 -49 2159 110 3 0 chr12 5190548 5190870 -139091619 + AluSx SINE Alu 1 323 0 362 100 17 0 chr12 5190985 5191045 -139091444 + (TCCCC)n Simple_repeat Simple_repeat 3 63 0 21 36 0 0 chr12 5191317 5191345 -139091144 + AT_rich Low_complexity Low_complexity 1 28 0 41 58 0 0 chr12 5193127 5193196 -139089293 + AT_rich Low_complexity Low_complexity 1 69 0 1041 189 34 5 chr12 5194516 5194722 -139087767 + MER20 DNA MER1_type 8 219 0 372 365 41 15 chr12 5194839 5195179 -139087310 + L3b LINE CR1 1143 1491 -92 340 261 48 11 chr12 5196193 5196358 -139086131 + MIR SINE MIR 12 258 -4 375 23 0 0 chr12 5197112 5197156 -139085333 + (TG)n Simple_repeat Simple_repeat 1 44 0 780 226 32 36 chr12 5199117 5199338 -139083151 - MIR SINE MIR -14 248 29 228 254 0 0 chr12 5200196 5200255 -139082234 + T-rich Low_complexity Low_complexity 1 59 0 209 275 38 25 chr12 5200343 5200423 -139082066 + CT-rich Low_complexity Low_complexity 4 84 0 1749 192 58 6 chr12 5201983 5202327 -139080162 - MLT1A1 LTR MaLR -3 362 1 540 291 23 0 chr12 5202639 5202811 -139079678 - MIR3 SINE MIR -3 205 30 440 218 0 0 chr12 5203436 5203523 -139078966 - LTR33 LTR ERVL -1 520 434 414 261 106 55 chr12 5204174 5204373 -139078116 - MLT1K LTR MaLR -17 571 363 184 318 80 0 chr12 5204772 5204860 -139077629 - L2 LINE L2 -518 2796 2702 736 274 45 0 chr12 5205522 5205723 -139076766 + MIR SINE MIR 16 225 -37 742 303 125 24 chr12 5206630 5207314 -139075175 + L2 LINE L2 2549 3309 -4 371 303 29 67 chr12 5207483 5207647 -139074842 - MIR SINE MIR -65 143 6 527 274 128 0 chr12 5207657 5207821 -139074668 - MIR SINE MIR -70 192 8 407 319 135 5 chr12 5208567 5208752 -139073737 + MIR SINE MIR 42 250 -12 209 146 21 0 chr12 5208758 5208806 -139073683 + (TAA)n Simple_repeat Simple_repeat 3 51 0 189 0 0 0 chr12 5209130 5209151 -139073338 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 299 383 25 41 chr12 5209340 5209536 -139072953 - MIR SINE MIR -50 212 20 419 335 13 13 chr12 5210164 5210316 -139072173 - MER5A DNA MER1_type -3 186 35 265 313 45 37 chr12 5210200 5210334 -139072155 + MER5A DNA MER1_type 50 184 -5 * 399 253 131 19 chr12 5210985 5211145 -139071344 - MIR SINE MIR -58 204 30 348 331 21 35 chr12 5211966 5212111 -139070378 - MIR SINE MIR -71 191 49 369 75 0 0 chr12 5212146 5212199 -139070290 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 240 304 13 38 chr12 5212857 5212936 -139069553 + L2 LINE L2 3191 3267 -5 565 101 13 0 chr12 5213986 5214065 -139068424 + MADE1 DNA Mariner 1 80 0 2480 160 24 12 chr12 5214332 5214756 -139067733 - MSTB1 LTR MaLR 0 432 4 252 149 0 0 chr12 5214852 5214899 -139067590 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 301 274 32 73 chr12 5214899 5215023 -139067466 - L2 LINE L2 0 3313 3195 1380 196 36 0 chr12 5217266 5217567 -139064922 + MER33 DNA MER1_type 5 316 -8 1239 197 16 100 chr12 5218566 5218886 -139063603 - AluJb SINE Alu -8 294 2 250 289 22 11 chr12 5219376 5219466 -139063023 - MIR SINE MIR -107 155 65 484 355 69 43 chr12 5220292 5220544 -139061945 + L2 LINE L2 2959 3224 -89 2463 56 0 0 chr12 5220544 5220850 -139061639 - AluY SINE Alu -5 306 1 484 355 69 43 chr12 5220850 5220943 -139061546 + L2 LINE L2 3224 3313 0 254 209 105 35 chr12 5220938 5221024 -139061465 - L2 LINE L2 -212 3060 2969 * 327 304 99 44 chr12 5222018 5222199 -139060290 - MIR SINE MIR -71 191 1 356 250 0 0 chr12 5222432 5222512 -139059977 - MER116 DNA Mariner 0 80 1 866 289 29 8 chr12 5222865 5223111 -139059378 + MIR SINE MIR 12 262 0 1373 248 47 77 chr12 5223578 5223770 -139058719 - MER77 LTR ERV1 -4 601 405 1798 153 0 7 chr12 5223770 5224064 -139058425 + AluSx SINE Alu 1 292 -20 1373 248 47 77 chr12 5224064 5224395 -139058094 - MER77 LTR ERV1 -200 405 121 226 296 45 11 chr12 5224457 5224545 -139057944 - L2 LINE L2 -43 3229 3139 506 336 68 65 chr12 5225796 5226172 -139056317 - L2 LINE L2 -5 3267 2891 261 333 53 26 chr12 5226172 5226286 -139056203 + MER91C DNA MER1_type 1 117 -23 332 341 24 8 chr12 5226647 5226773 -139055716 - MIR3 SINE MIR -51 157 30 509 253 91 19 chr12 5226855 5227192 -139055297 - MLT1J2 LTR MaLR -8 442 13 221 269 71 14 chr12 5227332 5227438 -139055051 - MIR SINE MIR -66 142 32 520 272 10 57 chr12 5228679 5228882 -139053607 - MIR SINE MIR -8 254 62 1870 141 7 3 chr12 5228882 5229180 -139053309 - AluSg SINE Alu -11 299 1 181 333 0 71 chr12 5229303 5229402 -139053087 - L2 LINE L2 -185 3087 2996 349 233 233 7 chr12 5230441 5230591 -139051898 - MER5A DNA MER1_type 0 189 6 1234 131 60 0 chr12 5231615 5231814 -139050675 + MER20 DNA MER1_type 4 214 -5 260 241 224 35 chr12 5232143 5232259 -139050230 + MIR3 SINE MIR 6 143 -65 264 294 0 0 chr12 5234191 5234361 -139048128 + (CA)n Simple_repeat Simple_repeat 1 170 0 340 333 19 62 chr12 5234798 5234960 -139047529 + MIR SINE MIR 25 179 -83 1368 153 0 5 chr12 5235666 5235888 -139046601 + AluSg/x SINE Alu 84 304 -8 266 231 15 46 chr12 5236451 5236516 -139045973 - L2 LINE L2 -10 3303 3241 2018 119 0 10 chr12 5236795 5237107 -139045382 - AluSc SINE Alu 0 309 1 448 280 161 16 chr12 5237684 5237870 -139044619 + MIR SINE MIR 22 234 -28 307 272 52 29 chr12 5237960 5238096 -139044393 - MIR SINE MIR -14 248 110 187 329 63 0 chr12 5238199 5238278 -139044211 - L2 LINE L2 -78 3194 3111 221 0 35 0 chr12 5238667 5238696 -139043793 + (GA)n Simple_repeat Simple_repeat 1 30 0 197 303 66 0 chr12 5239019 5239095 -139043394 - L2 LINE L2 -78 3194 3114 260 334 138 2 chr12 5239451 5239623 -139042866 + MIR SINE MIR 15 194 -68 215 31 31 0 chr12 5239755 5239787 -139042702 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 264 331 75 6 chr12 5239940 5240100 -139042389 - MER5A DNA MER1_type -18 171 1 1751 105 44 24 chr12 5241281 5241576 -139040913 - L1MA3 LINE L1 0 6305 6005 476 283 36 18 chr12 5241580 5241746 -139040743 + MIR3 SINE MIR 30 198 -10 248 265 44 0 chr12 5243575 5243643 -139038846 - L2 LINE L2 -1 3312 3242 195 299 58 23 chr12 5244874 5244961 -139037528 + MIR SINE MIR 103 192 -70 330 337 66 31 chr12 5245097 5245293 -139037196 + MIR SINE MIR 24 226 -36 399 211 33 11 chr12 5245957 5246047 -139036442 - L2 LINE L2 0 3313 3222 1352 223 15 29 chr12 5246061 5246195 -139036294 + L1MA9 LINE L1 3 137 -6893 5019 28 2 5 chr12 5246195 5246777 -139035712 + L1PA3 LINE L1 5573 6152 -3 1352 223 15 29 chr12 5246777 5246981 -139035508 + L1MA9 LINE L1 137 1369 -5661 980 266 99 20 chr12 5246990 5247392 -139035097 - MER57B LTR ERV1 0 434 1 1883 229 37 18 chr12 5247420 5247932 -139034557 + L1MA9 LINE L1 3162 3683 -3423 * 5171 149 26 92 chr12 5247924 5248378 -139034111 + L1MA9 LINE L1 5660 6142 -1130 2066 117 7 0 chr12 5248378 5248678 -139033811 + AluSq SINE Alu 1 302 -11 5171 149 26 92 chr12 5248678 5248803 -139033686 + L1MA9 LINE L1 6142 6274 -998 1735 172 13 0 chr12 5248803 5249111 -139033378 + AluJb SINE Alu 1 312 0 5171 149 26 92 chr12 5249111 5249410 -139033079 + L1MA9 LINE L1 6274 6591 -681 1664 88 0 0 chr12 5249410 5249626 -139032863 + AluSg/x SINE Alu 89 304 -8 5171 149 26 92 chr12 5249626 5250474 -139032015 + L1MA9 LINE L1 6591 7272 0 269 277 23 35 chr12 5250662 5250779 -139031710 + MIR SINE MIR 16 129 -103 430 256 216 16 chr12 5251010 5251315 -139031174 - MLT1G1 LTR MaLR 0 595 230 324 120 0 0 chr12 5252081 5252131 -139030358 + (TATG)n Simple_repeat Simple_repeat 2 51 0 243 281 22 45 chr12 5253624 5253713 -139028776 - MIR SINE MIR -62 146 60 1247 203 109 14 chr12 5254054 5254330 -139028159 + AluJb SINE Alu 1 302 0 1917 188 30 10 chr12 5255167 5255566 -139026923 - L1MB7 LINE L1 -28 6156 5750 452 18 18 0 chr12 5255815 5255872 -139026617 + (TC)n Simple_repeat Simple_repeat 1 58 0 237 108 0 0 chr12 5256858 5256895 -139025594 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr12 5257320 5257342 -139025147 + AT_rich Low_complexity Low_complexity 1 22 0 277 232 0 0 chr12 5257864 5257920 -139024569 + GA-rich Low_complexity Low_complexity 117 172 0 1066 241 38 4 chr12 5258101 5258338 -139024151 + MIR SINE MIR 18 262 0 180 224 60 30 chr12 5260455 5260522 -139021967 - L2 LINE L2 -25 3247 3179 396 343 70 6 chr12 5261933 5262105 -139020384 - L2 LINE L2 -3 3269 3087 241 299 82 3 chr12 5262223 5262371 -139020118 - MIR SINE MIR -24 238 37 337 259 69 73 chr12 5262653 5262942 -139019547 + L2 LINE L2 2812 3099 -173 368 273 29 36 chr12 5262965 5263104 -139019385 - MER63A DNA MER1_type -4 206 69 209 356 67 22 chr12 5263178 5263313 -139019176 + L2 LINE L2 3111 3251 -21 256 308 15 90 chr12 5263462 5263595 -139018894 + L2 LINE L2 3191 3313 0 207 383 47 0 chr12 5263884 5263991 -139018498 + L2 LINE L2 3137 3248 -24 675 282 12 82 chr12 5264424 5264669 -139017820 + MIR SINE MIR 32 259 -3 199 250 0 0 chr12 5264680 5264716 -139017773 + L3b LINE CR1 1291 1326 -257 480 191 75 0 chr12 5264813 5264907 -139017582 + MER5A DNA MER1_type 9 109 -80 665 228 58 78 chr12 5265827 5266033 -139016456 + MIR SINE MIR 20 221 -41 408 313 113 0 chr12 5267221 5267371 -139015118 + MIR3 SINE MIR 40 206 -2 323 301 53 30 chr12 5270666 5270799 -139011690 + L1ME4a LINE L1 5975 6110 -11 268 296 0 0 chr12 5270912 5270983 -139011506 - L2 LINE L2 -2 3270 3200 261 57 0 0 chr12 5271121 5271156 -139011333 + (A)n Simple_repeat Simple_repeat 1 35 0 7479 37 4 3 chr12 5271223 5272166 -139010323 + L1PA5 LINE L1 5210 6154 0 2263 143 73 26 chr12 5272262 5272567 -139009922 - MER31A LTR ERV1 0 485 149 1185 210 93 101 chr12 5272567 5273180 -139009309 + LTR36 LTR ERV1 4 611 0 2263 143 73 26 chr12 5273180 5273337 -139009152 - MER31A LTR ERV1 -336 149 1 265 324 88 10 chr12 5273466 5273568 -139008921 - MIR SINE MIR -76 132 23 390 295 8 8 chr12 5273954 5274083 -139008406 + MLT2F LTR ERVL 511 639 -24 2091 202 78 11 chr12 5274471 5274931 -139007558 + MLT2F LTR ERVL 1 491 -172 180 200 0 0 chr12 5275539 5275584 -139006905 + (CCCCAG)n Simple_repeat Simple_repeat 3 47 0 813 238 11 0 chr12 5275612 5275797 -139006692 + MLT2F LTR ERVL 477 663 0 311 167 0 17 chr12 5275863 5275923 -139006566 + FAM SINE Alu 115 173 -2 2082 118 27 0 chr12 5275927 5276223 -139006266 + AluY SINE Alu 3 306 -5 410 327 44 23 chr12 5276375 5276579 -139005910 - MIR SINE MIR -45 217 4 792 219 31 85 chr12 5276710 5276934 -139005555 - MIR SINE MIR -2 260 49 468 328 41 26 chr12 5277736 5277931 -139004558 + MIR SINE MIR 63 260 -2 234 81 0 0 chr12 5278185 5278222 -139004267 + (CA)n Simple_repeat Simple_repeat 2 38 0 297 128 0 0 chr12 5278542 5278589 -139003900 + (A)n Simple_repeat Simple_repeat 1 47 0 257 217 12 72 chr12 5279164 5279247 -139003242 + MIR3 SINE MIR 124 201 -7 2978 148 24 16 chr12 5279277 5279776 -139002713 + MLT1D LTR MaLR 1 503 -2 354 249 141 68 chr12 5280063 5280240 -139002249 - MIR SINE MIR -58 204 15 796 243 15 5 chr12 5280316 5280495 -139001994 - MER5A DNA MER1_type -5 184 4 195 42 0 0 chr12 5281710 5281734 -139000755 + (GGGAA)n Simple_repeat Simple_repeat 3 26 0 326 186 12 0 chr12 5283389 5283475 -138999014 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 271 222 83 14 chr12 5283567 5283639 -138998850 + MER5A DNA MER1_type 14 90 -99 180 156 94 94 chr12 5283585 5283649 -138998840 - MER5A DNA MER1_type -21 168 105 * 639 338 92 5 chr12 5283756 5284205 -138998284 - LTR16B LTR ERVL -13 451 1 735 281 52 8 chr12 5285303 5285552 -138996937 + MIR SINE MIR 3 262 0 182 170 0 21 chr12 5286338 5286385 -138996104 + G-rich Low_complexity Low_complexity 2 47 0 2869 19 0 0 chr12 5291537 5291850 -138990639 + AluYb8 SINE Alu 1 313 -5 208 327 28 37 chr12 5292123 5292230 -138990259 - L2 LINE L2 -14 3258 3153 593 121 30 0 chr12 5292563 5292662 -138989827 - MER58 DNA MER1_type -1 2419 2318 519 294 72 13 chr12 5293429 5293582 -138988907 - MIR3 SINE MIR -27 181 20 299 331 132 0 chr12 5293891 5294012 -138988477 - L2 LINE L2 0 3272 3136 845 83 0 18 chr12 5296173 5296282 -138986207 - AluSq/x SINE Alu -161 151 45 183 336 80 50 chr12 5296303 5296541 -138985948 + L2 LINE L2 3024 3268 -4 2270 71 0 20 chr12 5296972 5297308 -138985181 - AluY SINE Alu 0 311 17 190 305 68 0 chr12 5297555 5297614 -138984875 - L2 LINE L2 -24 3248 3186 333 0 0 0 chr12 5298147 5298184 -138984305 + (TG)n Simple_repeat Simple_repeat 2 38 0 2333 104 0 0 chr12 5298184 5298481 -138984008 - AluSx SINE Alu -15 297 1 230 193 35 0 chr12 5298913 5298970 -138983519 - MARNA DNA Mariner -134 452 394 302 286 82 59 chr12 5299340 5299595 -138982894 + MIR SINE MIR 2 262 0 1548 208 20 10 chr12 5300403 5300697 -138981792 + AluJo SINE Alu 1 297 -15 444 285 223 0 chr12 5300831 5301024 -138981465 + MIR SINE MIR 1 236 -26 617 239 189 25 chr12 5301252 5301495 -138980994 + L2 LINE L2 3025 3307 -6 181 318 71 48 chr12 5301543 5301669 -138980820 + L2 LINE L2 3132 3260 -12 215 289 0 0 chr12 5302515 5302560 -138979929 - L2 LINE L2 -18 3254 3210 417 244 67 17 chr12 5302610 5302729 -138979760 - MIR3 SINE MIR -83 125 1 1498 217 17 0 chr12 5303096 5303391 -138979098 + AluJo SINE Alu 1 300 -12 234 204 0 0 chr12 5304262 5304306 -138978183 - MIR3 SINE MIR -1 207 164 386 305 102 0 chr12 5304317 5304435 -138978054 - MER5A DNA MER1_type 0 189 60 640 282 31 31 chr12 5304870 5305065 -138977424 - MIR SINE MIR -60 202 8 236 204 20 0 chr12 5305476 5305525 -138976964 - MIR SINE MIR -5 257 208 180 0 0 0 chr12 5305529 5305549 -138976940 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 789 150 18 0 chr12 5305549 5305662 -138976827 - FLAM_C SINE Alu -23 120 6 666 263 70 0 chr12 5305667 5305853 -138976636 - MIR SINE MIR -49 213 15 217 313 16 0 chr12 5305844 5305908 -138976581 - L3b LINE CR1 -217 1366 1302 * 322 218 211 68 chr12 5305910 5306057 -138976432 - L2 LINE L2 0 3313 3146 429 253 104 33 chr12 5307474 5307656 -138974833 + MIR SINE MIR 3 197 -65 1037 295 43 19 chr12 5308017 5308393 -138974096 - MLT1I LTR MaLR 0 409 25 345 302 111 48 chr12 5308627 5308816 -138973673 - MIR3 SINE MIR -5 203 3 366 248 219 0 chr12 5309185 5309290 -138973199 + L2 LINE L2 3184 3311 -2 * 449 322 122 14 chr12 5309287 5309501 -138972988 - MIR SINE MIR -19 243 7 2266 89 7 0 chr12 5309541 5309845 -138972644 - AluSx SINE Alu -6 306 1 23 78 0 0 chr12 5309965 5310016 -138972473 + AT_rich Low_complexity Low_complexity 1 51 0 1725 189 3 0 chr12 5310041 5310337 -138972152 - AluJo SINE Alu -15 297 1 489 305 55 0 chr12 5311347 5311511 -138970978 + MIR SINE MIR 64 236 -26 1751 149 0 17 chr12 5311572 5311861 -138970628 - AluJb SINE Alu -24 288 5 209 247 206 0 chr12 5312457 5312530 -138969959 + MIR SINE MIR 46 133 -129 180 152 0 0 chr12 5313256 5313289 -138969200 + T-rich Low_complexity Low_complexity 5 37 0 325 279 126 9 chr12 5313291 5313402 -138969087 - L2 LINE L2 -9 3263 3140 368 285 132 51 chr12 5313545 5313736 -138968753 - MIR SINE MIR -58 204 5 225 341 53 59 chr12 5314126 5314304 -138968185 + MIR3 SINE MIR 9 199 -63 420 242 0 22 chr12 5314753 5314844 -138967645 - MIR3 SINE MIR -17 191 103 216 333 151 0 chr12 5315661 5315754 -138966735 - MIR SINE MIR -109 153 47 185 346 0 0 chr12 5317915 5317967 -138964522 + MIR SINE MIR 16 67 -141 244 340 19 9 chr12 5320568 5320674 -138961815 - L3b LINE CR1 -185 1398 1292 185 246 58 72 chr12 5320924 5320993 -138961496 + L2 LINE L2 3205 3272 0 493 201 235 40 chr12 5321694 5321843 -138960646 + MER5A DNA MER1_type 9 186 -3 765 243 21 21 chr12 5321854 5322043 -138960446 + MER5A DNA MER1_type 1 189 0 187 258 81 0 chr12 5322528 5322590 -138959899 + MIR3 SINE MIR 110 176 -32 403 334 91 29 chr12 5322720 5323103 -138959386 - L1MEd LINE L1 -5366 753 347 359 294 91 62 chr12 5324397 5324672 -138957817 + HAL1 LINE L1 2225 2507 0 351 60 0 0 chr12 5325029 5325079 -138957410 + (CA)n Simple_repeat Simple_repeat 2 51 0 354 271 241 15 chr12 5326180 5326383 -138956106 + MIR SINE MIR 14 262 0 213 151 0 0 chr12 5326844 5326897 -138955592 + T-rich Low_complexity Low_complexity 1 53 0 462 244 144 37 chr12 5328180 5328451 -138954038 + LTR33 LTR ERVL 222 521 0 291 303 23 61 chr12 5328534 5328666 -138953823 + L2 LINE L2 3142 3268 -4 441 0 0 0 chr12 5329886 5329935 -138952554 + (TG)n Simple_repeat Simple_repeat 1 49 0 561 192 0 10 chr12 5330620 5330724 -138951765 - FLAM_A SINE Alu -22 120 18 240 269 0 0 chr12 5332121 5332173 -138950316 + (TG)n Simple_repeat Simple_repeat 2 53 0 2567 210 149 117 chr12 5332231 5332753 -138949736 - L1MC3 LINE L1 -16 7769 7265 350 196 21 82 chr12 5332753 5332850 -138949639 - MLT1F1 LTR MaLR -442 125 35 2567 210 149 117 chr12 5332850 5333574 -138948915 - L1MC3 LINE L1 -520 7265 6384 1133 225 74 21 chr12 5333615 5333953 -138948536 - L1ME3A LINE L1 -3 6167 5812 323 296 62 6 chr12 5333952 5334131 -138948358 - L1ME4a LINE L1 -227 5894 5706 * 454 296 169 21 chr12 5334155 5334398 -138948091 + L3 LINE CR1 1023 1301 -276 286 274 127 45 chr12 5334590 5334747 -138947742 + L3 LINE CR1 1374 1543 -34 322 188 43 0 chr12 5334933 5335002 -138947487 + L1MB1 LINE L1 6082 6153 -36 274 128 0 39 chr12 5335300 5335378 -138947111 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 1164 162 5 5 chr12 5335378 5335594 -138946895 - L1PA15 LINE L1 -12 6153 5938 2384 235 56 14 chr12 5335599 5336241 -138946248 - L1MC4a LINE L1 0 7808 7140 475 294 41 35 chr12 5337732 5337929 -138944560 + MIR SINE MIR 10 207 -55 196 259 161 25 chr12 5338261 5338342 -138944147 - MIR SINE MIR -73 135 44 318 283 40 10 chr12 5340065 5340164 -138942325 + MIR SINE MIR 135 236 -26 366 309 54 11 chr12 5340762 5340930 -138941559 - MIR3 SINE MIR -24 184 7 424 278 23 30 chr12 5341517 5341650 -138940839 + MIR SINE MIR 90 221 -41 282 309 58 22 chr12 5342732 5342871 -138939618 + MIR3 SINE MIR 4 147 -61 506 299 58 39 chr12 5343852 5344059 -138938430 - MIR SINE MIR -12 250 40 279 305 66 60 chr12 5345963 5346114 -138936375 + L2 LINE L2 3117 3268 -4 291 280 127 17 chr12 5346310 5346428 -138936061 - MIR3 SINE MIR -12 196 66 22 0 0 0 chr12 5346469 5346491 -138935998 + AT_rich Low_complexity Low_complexity 1 22 0 252 158 0 0 chr12 5347944 5348001 -138934488 + T-rich Low_complexity Low_complexity 1 57 0 4668 35 0 2 chr12 5348002 5348549 -138933940 - L1PA3 LINE L1 -1 6154 5609 3464 77 4 2 chr12 5348772 5349224 -138933265 + L1PA10 LINE L1 5665 6117 -51 213 344 0 0 chr12 5349622 5349683 -138932806 + MIR SINE MIR 49 109 -153 1684 241 77 42 chr12 5349689 5350427 -138932062 + L1ME2 LINE L1 3728 4491 -1655 2175 125 46 10 chr12 5350429 5351011 -138931478 - L1PB4 LINE L1 -547 5609 5015 3050 146 23 4 chr12 5351015 5351528 -138930961 + L1PB4 LINE L1 5622 6144 -12 2945 232 42 36 chr12 5351533 5352321 -138930168 + L1ME2 LINE L1 4477 5259 -905 1681 186 7 0 chr12 5352321 5352617 -138929872 - AluJb SINE Alu -14 298 1 2945 232 42 36 chr12 5352617 5353278 -138929211 + L1ME2 LINE L1 5259 5938 -226 2441 107 23 28 chr12 5353278 5353670 -138928819 + MLT1B LTR MaLR 1 390 0 2945 232 42 36 chr12 5353670 5353896 -138928593 + L1ME2 LINE L1 5938 6161 -3 341 311 93 7 chr12 5353896 5354047 -138928442 + MIR SINE MIR 92 255 -7 196 325 42 52 chr12 5354852 5355043 -138927446 + L2 LINE L2 2715 2903 -411 281 163 20 0 chr12 5355320 5355369 -138927120 + MER66A LTR ERV1 27 76 -402 337 314 122 0 chr12 5355550 5355722 -138926767 - MIR SINE MIR -24 238 46 205 182 0 23 chr12 5355926 5355970 -138926519 + CT-rich Low_complexity Low_complexity 1 43 0 390 42 0 0 chr12 5356212 5356260 -138926229 + (CA)n Simple_repeat Simple_repeat 2 49 0 679 303 79 45 chr12 5356801 5357204 -138925285 - MLT1K LTR MaLR -161 427 11 455 139 38 38 chr12 5357999 5358078 -138924411 + MER2 DNA MER2_type 1 79 -266 342 320 39 13 chr12 5358368 5358524 -138923965 - MIR SINE MIR -56 206 47 281 137 118 0 chr12 5358854 5358905 -138923584 - MLT2C1 LTR ERVL 0 520 464 43560 32 25 1 chr12 5358965 5364967 -138917522 - L1PA2 LINE L1 0 6155 4 979 151 104 5 chr12 5364968 5365160 -138917329 - Tigger1 DNA MER2_type -8 2410 2200 557 119 144 85 chr12 5365156 5365274 -138917215 - Tigger1 DNA MER2_type -2279 139 15 * 227 140 70 0 chr12 5365288 5365345 -138917144 + L1MC4 LINE L1 6641 6701 -1341 1787 180 30 3 chr12 5365364 5365697 -138916792 - MLT2C1 LTR ERVL -48 349 8 25357 202 29 26 chr12 5365703 5370186 -138912303 - ERVL-C2 LTR ERVL 0 5757 1289 2208 211 49 58 chr12 5370186 5370741 -138911748 + MLT2B3 LTR ERVL 1 550 -4 25357 202 29 26 chr12 5370741 5371713 -138910776 - ERVL-C2 LTR ERVL -4468 1289 177 279 0 0 0 chr12 5371713 5371744 -138910745 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 25357 202 29 26 chr12 5371744 5371915 -138910574 - ERVL-C2 LTR ERVL -5580 177 8 1964 151 47 114 chr12 5371915 5372404 -138910085 - MLT2C2 LTR ERVL -6 458 3 314 264 46 11 chr12 5372505 5372592 -138909897 + MLT1I LTR MaLR 320 409 0 588 206 73 30 chr12 5372820 5372985 -138909504 + MER5B DNA MER1_type 7 178 0 977 206 94 26 chr12 5375483 5375833 -138906656 + LTR37A LTR ERV1 53 426 0 222 284 136 23 chr12 5376458 5376546 -138905943 - MIR SINE MIR -5 257 160 188 298 0 0 chr12 5377633 5377690 -138904799 + L3 LINE CR1 404 460 -1117 197 0 71 0 chr12 5378247 5378275 -138904214 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 233 235 0 29 chr12 5378918 5378986 -138903503 + (CAGAGA)n Simple_repeat Simple_repeat 2 67 0 399 21 0 0 chr12 5379003 5379051 -138903438 + (CA)n Simple_repeat Simple_repeat 2 49 0 708 262 16 11 chr12 5379327 5379510 -138902979 + MIR SINE MIR 67 250 -12 490 308 50 6 chr12 5379526 5379685 -138902804 - MIR SINE MIR -75 187 22 1810 77 0 42 chr12 5379765 5380025 -138902464 - L1PB3 LINE L1 -154 6000 5752 956 212 0 0 chr12 5380507 5380677 -138901812 + AluJb SINE Alu 136 305 -7 219 236 0 18 chr12 5382079 5382134 -138900355 - MIR SINE MIR -67 141 88 2025 173 56 19 chr12 5382428 5382858 -138899631 - MER61C LTR ERV1 -1 433 4 593 272 44 11 chr12 5382931 5383111 -138899378 - MIR SINE MIR -70 192 7 331 288 68 41 chr12 5383929 5384148 -138898341 + L1MC5 LINE L1 7000 7224 -737 227 159 68 0 chr12 5384125 5384169 -138898320 + L1MC4 LINE L1 7201 7247 -795 * 430 263 63 99 chr12 5384179 5384769 -138897720 + L1MC5 LINE L1 7248 7733 -228 1854 141 41 63 chr12 5384986 5385216 -138897273 - MSTA LTR MaLR 0 428 207 2316 94 0 0 chr12 5385216 5385514 -138896975 - AluSc SINE Alu -7 302 5 1854 141 41 63 chr12 5385514 5385646 -138896843 - MSTA LTR MaLR -221 207 74 583 165 0 0 chr12 5385959 5386056 -138896433 - MSTA LTR MaLR -331 97 1 22 0 0 0 chr12 5386093 5386115 -138896374 + AT_rich Low_complexity Low_complexity 1 22 0 2318 44 0 0 chr12 5386122 5386395 -138896094 + AluY SINE Alu 35 307 -4 321 329 72 0 chr12 5386397 5386564 -138895925 - L1ME3A LINE L1 -300 5870 5692 279 344 32 0 chr12 5386580 5386737 -138895752 - L1ME3A LINE L1 -478 5643 5482 208 244 0 35 chr12 5386844 5386930 -138895559 + A-rich Low_complexity Low_complexity 2 84 0 727 259 144 19 chr12 5387663 5388169 -138894320 - L1ME3 LINE L1 -286 5880 5300 374 285 24 0 chr12 5388461 5388584 -138893905 - L1MA10 LINE L1 -3 6331 6206 654 141 10 10 chr12 5388587 5388686 -138893803 + FRAM SINE Alu 1 99 -77 344 307 40 74 chr12 5388698 5388734 -138893755 - L1MA10 LINE L1 -311 6001 5966 2868 209 34 61 chr12 5388734 5389090 -138893399 - L1MC4 LINE L1 -743 5403 5039 249 98 0 0 chr12 5389090 5389131 -138893358 + (CA)n Simple_repeat Simple_repeat 2 42 0 2868 209 34 61 chr12 5389131 5389331 -138893158 - L1MC4 LINE L1 -1107 5039 5492 2554 62 3 0 chr12 5389331 5389639 -138892850 - AluY SINE Alu -2 309 1 2868 209 34 61 chr12 5389639 5390396 -138892093 - L1MC4 LINE L1 -653 5493 4717 180 396 42 10 chr12 5391065 5391161 -138891328 - L2 LINE L2 -25 3247 3149 284 137 20 0 chr12 5392505 5392556 -138889933 + MER53 DNA DNA 138 189 0 286 293 57 19 chr12 5392728 5392834 -138889655 + L2 LINE L2 3195 3304 -9 1277 106 38 64 chr12 5392919 5393154 -138889335 - L1PA11 LINE L1 0 6174 5946 1692 141 39 0 chr12 5393154 5393437 -138889052 - L1P LINE L1 -1502 4644 4351 289 345 42 18 chr12 5397109 5397277 -138885212 - MIR3 SINE MIR -1 207 36 985 264 115 21 chr12 5397296 5397765 -138884724 + MER113 DNA MER1_type? 1 513 -8 181 343 29 20 chr12 5399278 5399380 -138883109 - MIR SINE MIR -63 145 43 557 253 28 50 chr12 5399987 5400169 -138882320 + MIR3 SINE MIR 9 186 -22 2672 233 82 17 chr12 5400654 5401763 -138880726 - MER69B DNA AcHobo 0 1226 1 233 204 0 0 chr12 5402075 5402119 -138880370 + L1ME LINE L1 5730 5773 -348 21 0 0 0 chr12 5402252 5402273 -138880216 + AT_rich Low_complexity Low_complexity 1 21 0 1424 223 38 11 chr12 5402452 5402739 -138879750 - AluJb SINE Alu -7 295 1 203 176 0 0 chr12 5402938 5402972 -138879517 + GA-rich Low_complexity Low_complexity 1 34 0 331 282 0 0 chr12 5404026 5404111 -138878378 - L2 LINE L2 -3 3310 3226 587 288 21 46 chr12 5405367 5405607 -138876882 - L1ME LINE L1 -314 5807 5574 263 299 11 35 chr12 5406172 5406259 -138876230 - L2 LINE L2 0 3272 3188 2523 197 85 4 chr12 5406459 5407001 -138875488 - L1MB7 LINE L1 -8 6176 5591 289 288 130 28 chr12 5407177 5407570 -138874919 - L1ME4a LINE L1 -209 5912 5480 318 373 15 0 chr12 5408074 5408208 -138874281 + L3b LINE CR1 1262 1397 -186 377 243 84 24 chr12 5408529 5408692 -138873797 - MIR SINE MIR -19 189 17 547 266 45 17 chr12 5408924 5409101 -138873388 + MIR SINE MIR 81 262 0 237 196 0 0 chr12 5409163 5409219 -138873270 + CT-rich Low_complexity Low_complexity 3 58 0 211 292 0 0 chr12 5409226 5409274 -138873215 - L2 LINE L2 -10 3262 3215 275 282 65 100 chr12 5409427 5409597 -138872892 - MIR3 SINE MIR -14 194 31 349 302 43 9 chr12 5410228 5410344 -138872145 + MIR SINE MIR 26 145 -63 189 0 0 0 chr12 5410479 5410500 -138871989 + (T)n Simple_repeat Simple_repeat 1 21 0 364 351 0 0 chr12 5411178 5411292 -138871197 + L2 LINE L2 3195 3308 -5 340 254 75 67 chr12 5412323 5412457 -138870032 - MIR SINE MIR -108 154 20 2353 35 0 3 chr12 5412734 5413052 -138869437 + AluY SINE Alu 1 317 0 234 224 20 0 chr12 5413989 5414038 -138868451 + L2 LINE L2 3137 3186 -86 195 250 133 0 chr12 5414906 5414966 -138867523 - MIR SINE MIR -95 113 46 794 218 93 5 chr12 5415029 5415222 -138867267 + MER44D DNA MER2_type 1 480 -129 233 234 0 0 chr12 5416335 5416382 -138866107 + L2 LINE L2 3225 3271 -1 1241 249 23 26 chr12 5416802 5417144 -138865345 - L1ME1 LINE L1 -18 6148 5808 3085 130 45 2 chr12 5417165 5417649 -138864840 - L1PB2 LINE L1 -1 6150 5646 1218 250 56 75 chr12 5417649 5418061 -138864428 - MLT2B3 LTR ERVL 0 554 151 2666 43 19 0 chr12 5418063 5418385 -138864104 - L1PA7 LINE L1 -246 5908 5581 531 300 37 16 chr12 5418949 5419139 -138863350 - MIR3 SINE MIR -7 201 8 952 316 8 0 chr12 5419308 5419564 -138862925 - MIR SINE MIR -4 258 1 302 267 37 82 chr12 5420604 5420739 -138861750 - L2 LINE L2 0 3313 3185 416 285 48 42 chr12 5420765 5420930 -138861559 - MIR3 SINE MIR -27 181 16 330 333 26 52 chr12 5421035 5421188 -138861301 - L3b LINE CR1 -136 1447 1299 187 316 119 18 chr12 5421544 5421712 -138860777 + MIR SINE MIR 7 191 -71 1759 152 19 13 chr12 5421834 5422144 -138860345 - AluSx SINE Alu 0 312 1 357 301 78 0 chr12 5422320 5422423 -138860066 + L2 LINE L2 3203 3313 0 243 299 31 21 chr12 5422679 5422776 -138859713 - MIR3 SINE MIR -2 206 109 1919 119 0 33 chr12 5423589 5423892 -138858597 + AluSg SINE Alu 1 293 -17 2018 129 3 0 chr12 5424435 5424746 -138857743 - AluSx SINE Alu 0 312 1 599 289 34 5 chr12 5425393 5425597 -138856892 - ERVL LTR ERVL -3793 1971 1762 2317 81 0 0 chr12 5425741 5426069 -138856420 + AluY SINE Alu 1 311 0 334 289 82 59 chr12 5426956 5427226 -138855263 - ERVL LTR ERVL -5142 622 347 696 198 96 0 chr12 5427582 5427739 -138854750 + MER45C DNA AcHobo 25 196 -757 212 86 29 0 chr12 5428253 5428288 -138854201 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 267 318 12 0 chr12 5429187 5429272 -138853217 + GA-rich Low_complexity Low_complexity 3 88 0 25 65 0 0 chr12 5429504 5429550 -138852939 + AT_rich Low_complexity Low_complexity 1 46 0 1151 244 70 45 chr12 5430060 5430416 -138852073 - MLT1A2 LTR MaLR -4 370 6 1182 291 154 28 chr12 5431447 5432503 -138849986 - L2 LINE L2 0 3313 2111 566 275 16 11 chr12 5432508 5432690 -138849799 - MER117 DNA MER1_type -5 192 10 779 156 133 64 chr12 5432888 5433019 -138849470 + MER5A DNA MER1_type 3 150 -39 1449 156 122 0 chr12 5433019 5433289 -138849200 - AluSx SINE Alu -9 303 1 779 156 133 64 chr12 5433289 5433330 -138849159 + MER5A DNA MER1_type 150 187 -2 316 311 149 19 chr12 5433856 5434017 -138848472 + MIR SINE MIR 21 202 -60 1030 202 160 93 chr12 5434082 5434533 -138847956 + MLT1D LTR MaLR 21 501 -4 180 210 99 62 chr12 5435386 5435467 -138847022 + L2 LINE L2 476 559 -2755 401 331 86 43 chr12 5436373 5436571 -138845918 - L3b LINE CR1 0 1583 1368 937 167 6 13 chr12 5436571 5436727 -138845762 + FRAM SINE Alu 1 155 -11 401 331 86 43 chr12 5436727 5436806 -138845683 - L3b LINE CR1 -215 1368 1294 180 250 25 75 chr12 5437140 5437220 -138845269 - L3 LINE CR1 -143 1434 1359 590 276 20 15 chr12 5437459 5437655 -138844834 + MER117 DNA MER1_type 1 197 0 184 200 29 0 chr12 5437725 5437760 -138844729 + L2 LINE L2 3230 3265 -7 2335 75 0 3 chr12 5438625 5438931 -138843558 + AluY SINE Alu 1 305 -6 591 232 187 25 chr12 5438993 5439191 -138843298 + MIR SINE MIR 31 260 -2 430 99 127 0 chr12 5439258 5439329 -138843160 + MADE1 DNA Mariner 1 80 0 402 39 0 0 chr12 5440028 5440080 -138842409 + (TG)n Simple_repeat Simple_repeat 1 52 0 273 57 0 0 chr12 5440080 5440115 -138842374 + (GA)n Simple_repeat Simple_repeat 2 36 0 213 260 0 115 chr12 5441809 5441905 -138840584 + L3b LINE CR1 1180 1264 -319 1679 232 127 12 chr12 5444976 5445471 -138837018 - MLT1H1 LTR MaLR -2 553 2 236 259 23 76 chr12 5447160 5447186 -138835303 - L1MC4 LINE L1 -1304 6738 6712 321 26 0 0 chr12 5447186 5447224 -138835265 + (TG)n Simple_repeat Simple_repeat 2 39 0 236 259 23 76 chr12 5447224 5447328 -138835161 - L1MC4 LINE L1 -1330 6712 6615 260 246 29 0 chr12 5447362 5447431 -138835058 + GA-rich Low_complexity Low_complexity 4 74 0 461 239 101 112 chr12 5447448 5447875 -138834614 + MLT1J1 LTR MaLR 1 422 -24 242 325 36 0 chr12 5448250 5448333 -138834156 + L3 LINE CR1 1405 1490 -87 641 104 21 10 chr12 5448342 5448438 -138834051 + AluSc SINE Alu 198 294 -15 2376 41 24 0 chr12 5448507 5448797 -138833692 - AluY SINE Alu -2 309 13 214 200 0 0 chr12 5450208 5450248 -138832241 + A-rich Low_complexity Low_complexity 1 40 0 259 282 87 68 chr12 5450477 5450580 -138831909 + L2 LINE L2 3143 3247 -25 650 289 122 28 chr12 5450590 5450950 -138831539 + MLT1I LTR MaLR 14 407 -2 483 18 0 0 chr12 5450975 5451031 -138831458 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 266 319 106 28 chr12 5451220 5451361 -138831128 - L2 LINE L2 -22 3291 3140 1496 179 0 14 chr12 5451676 5451955 -138830534 + AluJb SINE Alu 1 275 -37 221 352 51 40 chr12 5452006 5452182 -138830307 - L2 LINE L2 -555 2759 2582 335 250 202 58 chr12 5453698 5453886 -138828603 - MIR SINE MIR -41 221 7 1525 194 19 10 chr12 5454174 5454459 -138828030 + AluJb SINE Alu 1 292 -128 294 29 0 0 chr12 5454459 5454494 -138827995 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 1525 194 19 10 chr12 5454494 5454625 -138827864 + AluJb SINE Alu 292 420 0 498 185 19 0 chr12 5454517 5454808 -138827681 + GA-rich Low_complexity Low_complexity 4 296 0 270 152 103 52 chr12 5456263 5456381 -138826108 - MIR SINE MIR -64 144 30 286 277 12 24 chr12 5456712 5456795 -138825694 + MIR SINE MIR 22 103 -105 1339 208 75 13 chr12 5461467 5461775 -138820714 + L1ME3 LINE L1 5825 6151 -11 22 0 0 0 chr12 5462042 5462064 -138820425 + AT_rich Low_complexity Low_complexity 1 22 0 2336 160 149 9 chr12 5463348 5463811 -138818678 + MER74A LTR ERVL 1 528 -30 363 23 0 0 chr12 5464376 5464420 -138818069 + (CA)n Simple_repeat Simple_repeat 2 45 0 406 292 32 50 chr12 5465747 5465966 -138816523 + LTR16C LTR ERVL 253 467 -24 760 284 34 13 chr12 5466571 5466807 -138815682 + LTR16A1 LTR ERVL 217 457 0 601 289 69 28 chr12 5466998 5467216 -138815273 + MIR SINE MIR 20 246 -16 299 158 103 137 chr12 5470308 5470454 -138812035 - MIR SINE MIR -66 142 2 1682 159 18 4 chr12 5470941 5471217 -138811272 - MLT1A1 LTR MaLR 0 365 86 2760 148 31 67 chr12 5471217 5471414 -138811075 - LTR26B LTR ERV1 0 531 328 2168 110 62 39 chr12 5471414 5471770 -138810719 - THE1B LTR MaLR 0 364 1 2760 148 31 67 chr12 5471770 5472094 -138810395 - LTR26B LTR ERV1 -203 328 29 1225 167 155 8 chr12 5472095 5472258 -138810231 - AluJb SINE Alu -16 296 158 503 62 0 104 chr12 5472258 5472354 -138810135 - L1PA5 LINE L1 0 6154 6069 1225 167 155 8 chr12 5472354 5472448 -138810041 - AluJb SINE Alu -154 158 1 322 51 0 0 chr12 5472448 5472487 -138810002 - LTR26B LTR ERV1 -492 39 1 406 176 47 24 chr12 5472490 5472575 -138809914 - MLT1A1 LTR MaLR -287 87 1 344 310 64 19 chr12 5472584 5472772 -138809717 - MIR3 SINE MIR -52 210 3 187 122 0 98 chr12 5474011 5474052 -138808437 - MIR SINE MIR -136 72 36 314 317 106 57 chr12 5474598 5474967 -138807522 + L2 LINE L2 2886 3272 0 302 302 9 9 chr12 5474980 5475086 -138807403 - MER69 DNA AcHobo 0 2526 2421 266 277 88 36 chr12 5476611 5476748 -138805741 + MIR3 SINE MIR 3 146 -62 198 231 0 0 chr12 5476862 5476901 -138805588 + L2 LINE L2 3255 3293 -20 195 268 0 0 chr12 5476868 5476909 -138805580 + MIR SINE MIR 216 256 -6 * 258 32 0 0 chr12 5477694 5477725 -138804764 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1862 126 7 3 chr12 5477734 5478019 -138804470 - AluSg SINE Alu -24 286 1 1073 81 0 0 chr12 5478019 5478155 -138804334 - AluSq/x SINE Alu -176 136 1 261 277 41 89 chr12 5478450 5478624 -138803865 - MIR SINE MIR -63 145 21 319 222 41 12 chr12 5478658 5478829 -138803660 + (TA)n Simple_repeat Simple_repeat 1 176 0 317 200 12 71 chr12 5480409 5480494 -138801995 + MIR SINE MIR 101 180 -82 508 274 95 37 chr12 5480904 5481094 -138801395 - MIR SINE MIR -42 220 20 234 279 15 0 chr12 5482409 5482477 -138800012 - MARNA DNA Mariner -106 480 412 1908 101 62 7 chr12 5484255 5484543 -138797946 + AluSx SINE Alu 1 304 -8 270 0 0 0 chr12 5484678 5484708 -138797781 + (TG)n Simple_repeat Simple_repeat 2 31 0 262 291 45 22 chr12 5485218 5485352 -138797137 - MLT1J2 LTR MaLR -239 211 75 277 288 101 88 chr12 5486508 5486963 -138795526 + L2 LINE L2 2812 3272 0 1569 151 7 53 chr12 5488061 5488365 -138794124 - AluJo SINE Alu -22 290 1 441 147 11 53 chr12 5488500 5488595 -138793894 + MIR SINE MIR 61 151 -111 1743 205 108 24 chr12 5488957 5489382 -138793107 - MLT1C LTR MaLR -6 461 1 203 250 59 29 chr12 5489424 5489492 -138792997 - MIR SINE MIR -89 173 104 391 284 57 28 chr12 5489566 5489742 -138792747 + MER5A DNA MER1_type 3 183 -6 318 258 76 61 chr12 5492714 5492846 -138789643 - L2 LINE L2 0 3313 3180 2057 101 7 16 chr12 5493079 5493386 -138789103 - AluY SINE Alu -7 304 1 777 269 111 1 chr12 5493628 5493839 -138788650 + MIR SINE MIR 5 237 -25 722 213 8 130 chr12 5493952 5494191 -138788298 - MER63A DNA MER1_type 0 210 1 28 79 0 0 chr12 5494668 5494731 -138787758 + AT_rich Low_complexity Low_complexity 1 63 0 778 288 30 13 chr12 5494794 5495030 -138787459 - MIR SINE MIR -2 260 21 654 141 67 15 chr12 5495045 5495180 -138787309 + Ricksha_a DNA DNA 12 153 -1028 * 5539 190 49 51 chr12 5495148 5495916 -138786573 + Ricksha DNA DNA 1712 2481 -765 2322 68 0 0 chr12 5495916 5496233 -138786256 - AluY SINE Alu 0 317 1 5539 190 49 51 chr12 5496233 5496999 -138785490 + Ricksha DNA DNA 2481 3246 0 410 232 176 0 chr12 5497181 5497306 -138785183 + MER96 DNA MER1_type? 27 173 -2 5504 150 27 9 chr12 5497539 5498468 -138784021 - L1MA9 LINE L1 0 6312 5367 308 263 38 98 chr12 5498905 5499038 -138783451 + MIR3 SINE MIR 76 200 -8 205 265 0 0 chr12 5499332 5499381 -138783108 - L2 LINE L2 -1 3312 3264 345 321 0 0 chr12 5499528 5499612 -138782877 - L2 LINE L2 -2 3270 3187 2888 117 2 9 chr12 5499662 5500091 -138782398 + L1PB3 LINE L1 5726 6151 -3 1070 211 5 10 chr12 5500579 5500788 -138781701 - MLT1C LTR MaLR -3 464 257 1729 202 123 40 chr12 5500903 5501342 -138781147 + MLT2B1 LTR ERVL 1 485 -35 213 39 0 0 chr12 5501342 5501368 -138781121 + (CA)n Simple_repeat Simple_repeat 2 27 0 1729 202 123 40 chr12 5501368 5501408 -138781081 + MLT2B1 LTR ERVL 485 520 0 663 301 85 4 chr12 5502448 5502684 -138779805 + MIR SINE MIR 5 259 -3 420 236 14 64 chr12 5502790 5502930 -138779559 - MIR3 SINE MIR 0 208 76 430 352 103 53 chr12 5502941 5503945 -138778544 - L2 LINE L2 -15 3257 2304 2376 72 10 0 chr12 5503945 5504252 -138778237 + AluY SINE Alu 1 310 -1 430 352 103 53 chr12 5504252 5505096 -138777393 - L2 LINE L2 -968 2304 1293 232 239 0 0 chr12 5505106 5505152 -138777337 - MIR SINE MIR -130 78 33 1431 174 83 0 chr12 5506189 5506454 -138776035 + AluJo SINE Alu 1 287 -25 957 271 161 21 chr12 5506532 5506967 -138775522 - MLT1H1 LTR MaLR -19 536 41 693 272 62 38 chr12 5507508 5507966 -138774523 + MLT1H LTR MaLR 22 587 -3 1052 175 18 51 chr12 5508542 5508759 -138773730 + MER20 DNA MER1_type 7 216 -3 1773 237 45 30 chr12 5508895 5509422 -138773067 + L1M4 LINE L1 3449 3983 -2163 6516 79 6 12 chr12 5509441 5510318 -138772171 + L1PA10 LINE L1 5298 6168 0 330 47 0 0 chr12 5510318 5510361 -138772128 - MADE1 DNA Mariner -37 43 1 346 330 51 24 chr12 5510410 5510601 -138771888 + MIR SINE MIR 7 206 -56 1259 167 0 5 chr12 5512202 5512406 -138770083 - AluSg/x SINE Alu -14 298 96 318 303 148 12 chr12 5513370 5513532 -138768957 + MIR3 SINE MIR 12 195 -13 2233 88 0 63 chr12 5513695 5514012 -138768477 - AluY SINE Alu -14 297 1 502 270 33 20 chr12 5514268 5514420 -138768069 - MIR3 SINE MIR -9 199 46 668 282 39 0 chr12 5515863 5516069 -138766420 - MIR SINE MIR 0 262 49 259 362 65 7 chr12 5516123 5516261 -138766228 - MIR3 SINE MIR -62 146 1 287 306 9 28 chr12 5516654 5516762 -138765727 - MIR SINE MIR -78 184 79 1231 287 132 30 chr12 5516771 5517684 -138764805 + L2 LINE L2 2326 3313 0 449 273 27 21 chr12 5518671 5518820 -138763669 + MIR SINE MIR 16 163 -63 268 311 168 19 chr12 5519587 5519748 -138762741 + MIR SINE MIR 53 237 -25 189 107 0 0 chr12 5520198 5520226 -138762263 + (TG)n Simple_repeat Simple_repeat 1 28 0 6365 58 1 11 chr12 5523311 5524135 -138758354 - L1PA5 LINE L1 0 6154 5364 226 279 135 0 chr12 5524135 5524239 -138758250 - MER113 DNA MER1_type? -176 345 228 253 292 35 42 chr12 5524338 5524482 -138758007 + L1ME LINE L1 4055 4197 -1949 352 300 118 30 chr12 5524578 5525051 -138757438 + L1ME LINE L1 4330 4844 -1302 328 315 88 21 chr12 5525095 5525333 -138757156 + L1ME LINE L1 5017 5270 -876 315 319 98 43 chr12 5525418 5525766 -138756723 + L1ME LINE L1 5384 5750 -412 396 295 23 66 chr12 5525779 5526037 -138756452 + L2 LINE L2 3006 3252 -61 43603 32 24 2 chr12 5527479 5533497 -138748992 - L1PA3 LINE L1 0 6155 1 1546 196 76 25 chr12 5534065 5534432 -138748057 + MLT1B LTR MaLR 5 390 0 278 249 68 79 chr12 5535213 5535390 -138747099 - MIR3 SINE MIR 0 208 34 459 325 39 10 chr12 5536766 5536972 -138745517 - LTR16A LTR ERVL -101 349 138 225 277 15 0 chr12 5537020 5537085 -138745404 - LTR16A1 LTR ERVL -319 138 73 623 286 40 0 chr12 5537106 5537281 -138745208 + MIR3 SINE MIR 21 202 -6 1547 158 104 188 chr12 5537701 5538519 -138743970 - Zaphod DNA AcHobo -1 4030 3282 945 285 0 12 chr12 5538520 5538762 -138743727 - Zaphod DNA AcHobo -3383 648 410 546 196 0 0 chr12 5538769 5538866 -138743623 + FLAM_A SINE Alu 34 130 -12 976 303 110 16 chr12 5538866 5539249 -138743240 - Zaphod DNA AcHobo -3604 427 9 228 350 50 25 chr12 5539357 5539477 -138743012 + L2 LINE L2 2620 2742 -572 210 150 0 0 chr12 5539486 5539526 -138742963 + (A)n Simple_repeat Simple_repeat 1 40 0 302 367 33 37 chr12 5539552 5539767 -138742722 + L2 LINE L2 2764 2977 -337 246 294 89 0 chr12 5540152 5540269 -138742220 + MIR SINE MIR 45 178 -69 1970 159 0 13 chr12 5540337 5540652 -138741837 + AluSx SINE Alu 1 311 -1 180 347 13 27 chr12 5541146 5541221 -138741268 + MIR3 SINE MIR 126 199 -9 21 36 0 0 chr12 5541243 5541271 -138741218 + AT_rich Low_complexity Low_complexity 1 28 0 357 380 28 6 chr12 5541517 5541696 -138740793 + MIR SINE MIR 20 202 -60 364 302 85 32 chr12 5543381 5543570 -138738919 - MIR SINE MIR -15 247 49 338 138 0 62 chr12 5544041 5544106 -138738383 - L2 LINE L2 -1085 2229 2169 740 287 38 43 chr12 5544741 5545163 -138737326 + L1MCc LINE L1 35 454 -5969 662 319 101 18 chr12 5545617 5546160 -138736329 + HAL1b LINE L1 53 640 -708 1710 231 150 67 chr12 5546495 5547458 -138735031 + L1MC5 LINE L1 6505 7530 -431 338 296 52 35 chr12 5547541 5547713 -138734776 + L1ME3A LINE L1 5987 6161 -9 209 262 19 37 chr12 5547717 5547824 -138734665 + (TATG)n Simple_repeat Simple_repeat 4 108 0 * 222 298 12 12 chr12 5547744 5547828 -138734661 + (TCTG)n Simple_repeat Simple_repeat 4 87 0 298 341 6 17 chr12 5548370 5548543 -138733946 + GA-rich Low_complexity Low_complexity 4 174 0 511 270 0 16 chr12 5549470 5549596 -138732893 + L2 LINE L2 3190 3313 0 581 276 13 84 chr12 5550026 5550251 -138732238 - MIR SINE MIR -5 257 49 263 296 281 0 chr12 5550401 5550604 -138731885 - MIR SINE MIR -1 261 2 203 226 19 19 chr12 5551100 5551153 -138731336 - L2 LINE L2 -3 3269 3217 418 310 78 0 chr12 5551347 5551499 -138730990 + MIR3 SINE MIR 33 197 -11 214 246 31 0 chr12 5552612 5552677 -138729812 - MIR SINE MIR -48 214 148 21 0 0 0 chr12 5553503 5553524 -138728965 + AT_rich Low_complexity Low_complexity 1 21 0 206 146 36 18 chr12 5553991 5554046 -138728443 + T-rich Low_complexity Low_complexity 4 59 0 353 252 131 44 chr12 5555247 5555453 -138727036 + MER5C DNA MER1_type 86 309 -15 324 207 133 30 chr12 5555534 5555669 -138726820 + MER103 DNA DNA 8 156 -10 1093 254 87 61 chr12 5555999 5556197 -138726292 + MLT1J LTR MaLR 3 194 -317 1954 97 23 0 chr12 5556197 5556454 -138726035 + AluSc SINE Alu 44 306 -3 1093 254 87 61 chr12 5556454 5556715 -138725774 + MLT1J LTR MaLR 194 474 -37 217 159 23 0 chr12 5556715 5556759 -138725730 + T-rich Low_complexity Low_complexity 2 46 0 2493 230 63 35 chr12 5556790 5557544 -138724945 - L1M4 LINE L1 -5720 822 5 924 283 79 41 chr12 5558057 5558425 -138724064 + L2 LINE L2 2157 2538 -776 1473 300 40 30 chr12 5558740 5559502 -138722987 + L2 LINE L2 2543 3313 0 334 291 39 0 chr12 5560413 5560516 -138721973 - MER103 DNA DNA -57 109 3 440 211 112 59 chr12 5560579 5560731 -138721758 + MER20B DNA MER1_type 43 202 -17 285 348 50 14 chr12 5560777 5560918 -138721571 - MIR3 SINE MIR -58 150 5 549 302 77 32 chr12 5561087 5561328 -138721161 - MIR SINE MIR -6 256 7 1823 176 10 3 chr12 5561939 5562246 -138720243 + AluSx SINE Alu 1 309 -3 10321 153 35 17 chr12 5562250 5565222 -138717267 + L1MA5 LINE L1 3046 6065 -235 4788 75 11 11 chr12 5565233 5565885 -138716604 - L1PA11 LINE L1 0 6174 5523 2032 218 54 41 chr12 5567417 5568467 -138714022 - L1MEc LINE L1 -3333 2882 1844 234 227 106 0 chr12 5568675 5568741 -138713748 - L1MC/D LINE L1 -1999 5809 5737 318 252 102 95 chr12 5568973 5569120 -138713369 - MIR3 SINE MIR -28 180 33 283 275 41 141 chr12 5569157 5569376 -138713113 - L3 LINE CR1 -9 1568 1379 2410 66 0 7 chr12 5569376 5569679 -138712810 + AluY SINE Alu 1 301 -10 283 275 41 141 chr12 5569679 5569728 -138712761 - L3 LINE CR1 -198 1379 1327 991 319 130 45 chr12 5569763 5570234 -138712255 - L3 LINE CR1 -412 1165 735 1533 192 0 17 chr12 5570234 5570531 -138711958 + AluJo SINE Alu 1 292 -20 2097 83 0 0 chr12 5570532 5570798 -138711691 + AluSc SINE Alu 44 309 0 991 319 130 45 chr12 5570798 5571094 -138711395 - L3 LINE CR1 -841 736 331 21 0 0 0 chr12 5571195 5571216 -138711273 + AT_rich Low_complexity Low_complexity 1 21 0 210 240 60 0 chr12 5572252 5572302 -138710187 + MIR3 SINE MIR 118 170 -38 882 204 21 5 chr12 5572375 5572561 -138709928 - MER5A DNA MER1_type 0 189 1 1119 198 107 0 chr12 5572622 5572865 -138709624 + Tigger4(Zombi) DNA MER2_type 1 269 -2462 1249 127 23 18 chr12 5572866 5573087 -138709402 + Tigger4(Zombi) DNA MER2_type 2510 2731 0 354 302 112 9 chr12 5573884 5574000 -138708489 - L2 LINE L2 -6 3266 3139 346 245 54 68 chr12 5575171 5575318 -138707171 + MER63A DNA MER1_type 61 205 -5 4073 113 9 3 chr12 5576663 5577300 -138705189 - L1PA16 LINE L1 -180 5986 5346 762 192 13 0 chr12 5577294 5577445 -138705044 + L1PA16 LINE L1 5994 6146 -20 * 30 59 0 0 chr12 5577449 5577500 -138704989 + AT_rich Low_complexity Low_complexity 1 51 0 639 251 24 86 chr12 5578013 5578268 -138704221 - MIR SINE MIR -3 259 21 22 35 0 0 chr12 5579131 5579160 -138703329 + AT_rich Low_complexity Low_complexity 1 29 0 206 240 0 20 chr12 5579427 5579477 -138703012 + CT-rich Low_complexity Low_complexity 3 51 0 241 336 112 0 chr12 5579666 5579782 -138702707 + L2 LINE L2 3137 3265 -7 2129 132 0 19 chr12 5580044 5580362 -138702127 + AluSx SINE Alu 1 312 0 1377 201 27 20 chr12 5580606 5580904 -138701585 + AluJo SINE Alu 1 300 -12 200 291 0 0 chr12 5580988 5581043 -138701446 + CT-rich Low_complexity Low_complexity 5 59 0 571 314 114 37 chr12 5581362 5581799 -138700690 + L3 LINE CR1 811 1281 -296 319 302 85 0 chr12 5581981 5582110 -138700379 - MIR SINE MIR -42 220 81 7091 48 14 0 chr12 5582530 5584154 -138698335 + L1PA7 LINE L1 4517 6152 -2 4683 168 7 8 chr12 5584404 5585296 -138697193 - L1MB7 LINE L1 -1 6183 5293 285 235 286 8 chr12 5586952 5587071 -138695418 + MIR3 SINE MIR 54 205 -3 241 285 73 73 chr12 5587074 5587225 -138695264 + L3b LINE CR1 1293 1443 -140 1810 141 3 37 chr12 5587287 5587586 -138694903 - AluJo SINE Alu -23 289 1 185 214 24 0 chr12 5588209 5588251 -138694238 + L2 LINE L2 3263 3305 -8 392 273 31 72 chr12 5588705 5588899 -138693590 + MIR3 SINE MIR 20 205 -3 461 224 34 84 chr12 5589022 5589201 -138693288 - L2 LINE L2 0 3313 3144 310 359 60 8 chr12 5590187 5590304 -138692185 + L2 LINE L2 3150 3272 0 231 303 8 59 chr12 5590312 5590431 -138692058 - MIR SINE MIR -60 202 90 306 232 0 0 chr12 5591456 5591525 -138690964 - MER96 DNA MER1_type? 0 175 107 25 0 0 0 chr12 5591742 5591767 -138690722 + AT_rich Low_complexity Low_complexity 1 25 0 2764 236 68 50 chr12 5592287 5593230 -138689259 + L1MB7 LINE L1 16 975 -5567 * 6524 239 52 41 chr12 5593228 5595573 -138686916 + L1MB7 LINE L1 813 3131 -3551 1205 215 79 27 chr12 5595573 5595940 -138686549 + MLT1B LTR MaLR 5 390 0 6524 239 52 41 chr12 5595940 5599266 -138683223 + L1MB7 LINE L1 3131 6620 -62 465 250 183 11 chr12 5599328 5599508 -138682981 - MLT1K LTR MaLR -2 586 376 326 247 153 24 chr12 5599546 5599631 -138682858 - MLT1K LTR MaLR -323 265 174 8642 117 8 30 chr12 5599922 5600607 -138681882 - Tigger1 DNA MER2_type 0 2418 1778 1567 194 3 48 chr12 5600607 5600922 -138681567 - AluJo SINE Alu -11 301 1 8642 117 8 30 chr12 5600922 5601646 -138680843 - Tigger1 DNA MER2_type -640 1778 1040 307 64 0 0 chr12 5601656 5601703 -138680786 + Alu SINE Alu 255 301 0 692 246 77 16 chr12 5601728 5601976 -138680513 + MLT1C LTR MaLR 205 467 0 2256 119 0 3 chr12 5602032 5602439 -138680050 + AluSg SINE Alu 1 406 0 1672 145 68 43 chr12 5602851 5603203 -138679286 - MER46B DNA MER2_type 0 236 1 905 174 56 0 chr12 5603842 5604020 -138678469 + L1MD3 LINE L1 7797 7984 -11 209 32 0 32 chr12 5604036 5604067 -138678422 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 465 254 8 54 chr12 5604843 5604973 -138677516 - MIR SINE MIR -75 187 64 252 281 79 36 chr12 5605323 5605462 -138677027 - MIR SINE MIR -116 146 2 221 139 23 0 chr12 5605577 5605620 -138676869 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 437 255 94 13 chr12 5605762 5605911 -138676578 + MIR3 SINE MIR 27 187 -21 285 303 193 0 chr12 5607370 5607489 -138675000 - L2 LINE L2 -239 3033 2892 216 67 0 0 chr12 5607651 5607681 -138674808 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2757 168 24 9 chr12 5608040 5608581 -138673908 + L1MC1 LINE L1 5481 6029 -304 676 189 13 38 chr12 5608590 5608749 -138673740 - L1PB3 LINE L1 -4 6150 5996 2789 60 2 50 chr12 5608879 5609282 -138673207 + L1PA7 LINE L1 5769 6152 -2 1723 184 14 0 chr12 5610808 5611086 -138671403 + AluJo SINE Alu 1 282 -30 833 185 0 0 chr12 5610951 5611088 -138671401 + AluJo/FRAM SINE Alu 148 308 0 196 42 0 0 chr12 5611088 5611112 -138671377 + (TAAA)n Simple_repeat Simple_repeat 2 136 0 21 0 0 0 chr12 5611239 5611260 -138671229 + AT_rich Low_complexity Low_complexity 1 21 0 389 328 107 74 chr12 5611349 5611752 -138670737 + L2 LINE L2 2837 3252 -20 2073 171 95 16 chr12 5611795 5612228 -138670261 - MER63C DNA MER1_type -28 902 436 243 0 0 0 chr12 5612228 5612255 -138670234 + (CA)n Simple_repeat Simple_repeat 2 28 0 1937 221 25 2 chr12 5612259 5612657 -138669832 - MER63C DNA MER1_type -521 409 3 187 355 37 45 chr12 5612695 5612937 -138669552 - L2 LINE L2 -217 3055 2816 207 0 0 0 chr12 5614269 5614292 -138668197 + (CA)n Simple_repeat Simple_repeat 2 24 0 2063 118 31 3 chr12 5614504 5614792 -138667697 - AluSx SINE Alu -16 296 1 2286 113 0 0 chr12 5615328 5615637 -138666852 - AluSq SINE Alu 0 313 5 293 209 9 118 chr12 5616160 5616270 -138666219 - L2 LINE L2 -3 3310 3213 471 241 68 0 chr12 5616471 5616604 -138665885 - MIR SINE MIR -12 250 109 2007 148 0 10 chr12 5618480 5618785 -138663704 + AluSx SINE Alu 1 302 -10 245 251 11 109 chr12 5618973 5619156 -138663333 + HAL1b LINE L1 78 242 -1106 883 212 75 37 chr12 5619470 5619711 -138662778 - MLT1K LTR MaLR -13 575 326 283 327 184 0 chr12 5619731 5619899 -138662590 - MLT1K LTR MaLR -389 199 1 212 302 12 12 chr12 5620385 5620471 -138662018 - MIR3 SINE MIR -41 167 82 264 306 36 36 chr12 5620506 5620617 -138661872 + MIR SINE MIR 17 127 -81 1384 71 0 0 chr12 5621630 5621798 -138660691 - AluY SINE Alu 0 311 144 229 289 99 49 chr12 5621886 5622028 -138660461 + MIR3 SINE MIR 2 114 -94 627 248 12 12 chr12 5623079 5623240 -138659249 + MER97a DNA MER1_type? 19 179 -715 242 239 28 28 chr12 5623343 5623414 -138659075 - L2 LINE L2 -2 3270 3200 1284 219 107 44 chr12 5623972 5624186 -138658303 - Charlie4a DNA MER1_type -1454 507 308 3223 83 42 16 chr12 5624186 5624231 -138658258 - MLT2A1 LTR ERVL 0 444 402 315 0 0 0 chr12 5624231 5624266 -138658223 + (CA)n Simple_repeat Simple_repeat 2 36 0 3223 83 42 16 chr12 5624266 5624653 -138657836 - MLT2A1 LTR ERVL -42 402 1 1284 219 107 44 chr12 5624653 5624914 -138657575 - Charlie4a DNA MER1_type -1653 308 2 268 268 42 14 chr12 5626154 5626225 -138656264 - MIR3 SINE MIR -49 159 87 255 271 85 39 chr12 5627159 5627288 -138655201 + L2 LINE L2 3136 3270 -2 2003 148 10 0 chr12 5627856 5628159 -138654330 + AluJb SINE Alu 1 306 -6 205 326 0 0 chr12 5628199 5628248 -138654241 + L2 LINE L2 3211 3259 -13 662 287 11 0 chr12 5628295 5628469 -138654020 - MER5A DNA MER1_type -1 188 13 947 264 98 46 chr12 5628527 5629008 -138653481 + MLT1J LTR MaLR 3 508 -3 191 310 116 72 chr12 5629084 5629516 -138652973 + L2 LINE L2 2032 2482 -832 2347 118 128 10 chr12 5629866 5630249 -138652240 + MSTA LTR MaLR 1 428 0 230 315 74 62 chr12 5630284 5630446 -138652043 + L2 LINE L2 2919 3082 -190 287 273 58 33 chr12 5633205 5633326 -138649163 + MIR3 SINE MIR 3 126 -82 988 223 19 23 chr12 5633420 5633635 -138648854 - MER20 DNA MER1_type -5 214 1 21 71 0 0 chr12 5633797 5633839 -138648650 + AT_rich Low_complexity Low_complexity 1 42 0 318 358 20 55 chr12 5633885 5634006 -138648483 - L3 LINE CR1 -11 1566 1453 1346 205 78 61 chr12 5634006 5634465 -138648024 - MLT1C LTR MaLR 0 467 1 318 358 20 55 chr12 5634465 5634544 -138647945 - L3 LINE CR1 -124 1453 1373 23 33 0 0 chr12 5634913 5634943 -138647546 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr12 5635010 5635039 -138647450 + (TAG)n Simple_repeat Simple_repeat 1 29 0 315 309 12 30 chr12 5635219 5635387 -138647102 + CT-rich Low_complexity Low_complexity 1 165 0 2837 0 3 0 chr12 5636425 5636728 -138645761 + AluYa5 SINE Alu 1 304 -7 788 219 69 94 chr12 5636800 5637192 -138645297 + MLT1B LTR MaLR 9 390 0 352 349 40 7 chr12 5637267 5637419 -138645070 + MIR SINE MIR 25 181 -81 2168 107 0 25 chr12 5639628 5639945 -138642544 - AluSx SINE Alu -3 309 1 779 296 78 21 chr12 5639973 5640411 -138642078 + L2 LINE L2 2578 3042 -230 343 374 7 7 chr12 5640738 5640877 -138641612 + L2 LINE L2 3134 3272 0 559 291 139 36 chr12 5641092 5641315 -138641174 + MIR SINE MIR 3 248 -14 400 289 122 44 chr12 5641480 5641864 -138640625 + MLT1J LTR MaLR 73 486 -25 336 245 104 43 chr12 5642086 5642249 -138640240 + MIR SINE MIR 57 229 -33 240 111 0 0 chr12 5642781 5642817 -138639672 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 427 306 44 50 chr12 5643199 5643379 -138639110 + MIR3 SINE MIR 20 198 -10 246 293 37 0 chr12 5643789 5643871 -138638618 - MIR SINE MIR -87 175 91 342 67 0 0 chr12 5645533 5645578 -138636911 + (TG)n Simple_repeat Simple_repeat 1 45 0 192 288 15 61 chr12 5645618 5645684 -138636805 - L2 LINE L2 -1 3271 3209 2141 172 5 52 chr12 5646616 5647023 -138635466 - MLT1B LTR MaLR -2 388 1 196 226 32 16 chr12 5647237 5647299 -138635190 - L2 LINE L2 -302 2970 2908 213 300 29 14 chr12 5648139 5648209 -138634280 - L2 LINE L2 -1 3271 3201 197 263 156 50 chr12 5648667 5648833 -138633656 - MIR SINE MIR -35 227 21 463 278 30 30 chr12 5649340 5649509 -138632980 - MIR SINE MIR -8 254 86 * 655 199 96 143 chr12 5649505 5649744 -138632745 - MIR SINE MIR -35 227 9 615 306 73 46 chr12 5650150 5650631 -138631858 - L3 LINE CR1 -519 1058 565 24 53 0 0 chr12 5650862 5650900 -138631589 + AT_rich Low_complexity Low_complexity 1 38 0 368 397 22 6 chr12 5651369 5651548 -138630941 - MIR3 SINE MIR -7 201 20 696 293 59 43 chr12 5651782 5652038 -138630451 - MIR SINE MIR 0 262 3 315 233 159 101 chr12 5652497 5652686 -138629803 - MIR SINE MIR -37 225 26 825 271 23 26 chr12 5653315 5653581 -138628908 - L1ME3A LINE L1 -11 6142 5878 198 191 0 0 chr12 5653587 5653629 -138628860 + (TA)n Simple_repeat Simple_repeat 2 43 0 231 303 90 0 chr12 5653633 5653722 -138628767 + L1MC4 LINE L1 6607 6703 -1339 * 250 211 0 0 chr12 5653680 5653732 -138628757 - L1MC4 LINE L1 -1339 6703 6652 819 183 20 26 chr12 5653742 5653895 -138628594 - FRAM SINE Alu -33 143 1 3766 256 77 43 chr12 5653906 5655585 -138626904 - L1ME3A LINE L1 -264 5889 4269 419 33 250 0 chr12 5655585 5655645 -138626844 + MADE1 DNA Mariner 2 76 -4 3766 256 77 43 chr12 5655645 5655798 -138626691 - L1ME3A LINE L1 -1884 4269 4123 381 43 0 0 chr12 5655798 5655845 -138626644 + (TG)n Simple_repeat Simple_repeat 1 47 0 3766 256 77 43 chr12 5655845 5656732 -138625757 - L1ME3A LINE L1 -2030 4123 3063 764 249 76 22 chr12 5656734 5656919 -138625570 - AluJo SINE Alu -18 294 100 717 301 91 6 chr12 5656921 5657263 -138625226 - L1ME3A LINE L1 -3094 3035 2665 839 180 42 31 chr12 5657269 5657578 -138624911 - MLT1B LTR MaLR 0 428 97 1350 240 110 6 chr12 5657585 5657939 -138624550 - MSTD LTR MaLR -4 392 2 504 186 31 0 chr12 5657940 5658037 -138624452 - MLT1B LTR MaLR -272 102 3 385 312 77 17 chr12 5658064 5658426 -138624063 - L1ME3A LINE L1 -3501 2628 2245 848 288 118 37 chr12 5658518 5659820 -138622669 - L1MEd LINE L1 -4138 2172 715 1151 239 9 44 chr12 5660670 5660988 -138621501 - L1ME2 LINE L1 -124 5974 5668 1665 228 157 47 chr12 5660990 5661128 -138621361 - L1ME2 LINE L1 -2056 4024 3903 351 0 0 0 chr12 5661128 5661167 -138621322 + (TG)n Simple_repeat Simple_repeat 2 40 0 1665 228 157 47 chr12 5661167 5661316 -138621173 - L1ME2 LINE L1 -2177 3903 3772 360 0 0 0 chr12 5661316 5661356 -138621133 + (TA)n Simple_repeat Simple_repeat 2 41 0 1665 228 157 47 chr12 5661356 5661384 -138621105 - L1ME2 LINE L1 -2308 3772 3748 2833 106 0 11 chr12 5661384 5661752 -138620737 + THE1B LTR MaLR 1 364 0 1665 228 157 47 chr12 5661752 5662402 -138620087 - L1ME2 LINE L1 -2332 3748 2903 753 192 8 0 chr12 5662404 5662534 -138619955 - FLAM_C SINE Alu -6 137 7 1390 246 45 14 chr12 5662534 5663025 -138619464 - L1ME2 LINE L1 -3161 2919 2414 430 275 15 65 chr12 5662993 5663193 -138619296 - L1ME2 LINE L1 -5810 260 71 * 1357 178 74 0 chr12 5663258 5663527 -138618962 + AluJb SINE Alu 1 289 -23 21 36 0 0 chr12 5663610 5663638 -138618851 + AT_rich Low_complexity Low_complexity 1 28 0 596 326 82 14 chr12 5663805 5664099 -138618390 - L3 LINE CR1 -13 1564 1251 1719 144 0 61 chr12 5664279 5664592 -138617897 + AluSx SINE Alu 1 294 -18 200 180 0 60 chr12 5664976 5665026 -138617463 + GA-rich Low_complexity Low_complexity 2 48 0 353 322 20 18 chr12 5665074 5665251 -138617238 + MIR3 SINE MIR 4 180 -28 2346 51 0 0 chr12 5665730 5666022 -138616467 + AluY SINE Alu 1 292 -19 424 364 56 0 chr12 5666470 5666632 -138615857 + MER91A DNA MER1_type 1 171 -25 331 227 118 27 chr12 5666759 5666869 -138615620 + MIR SINE MIR 26 145 -63 537 244 42 36 chr12 5666892 5667049 -138615440 + MIR SINE MIR 21 181 -62 452 293 24 37 chr12 5667047 5667211 -138615278 - MIR SINE MIR -77 185 24 * 265 182 0 78 chr12 5667274 5667351 -138615138 + L1MC4 LINE L1 6636 6706 -1336 224 300 0 0 chr12 5667353 5667413 -138615076 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 184 241 3 24 chr12 5667414 5667510 -138614979 + MIR SINE MIR 196 259 -3 210 303 72 10 chr12 5668772 5668872 -138613617 - MIR SINE MIR -68 140 31 435 319 89 0 chr12 5670262 5670419 -138612070 - MIR SINE MIR -22 240 70 184 293 0 0 chr12 5671232 5671273 -138611216 - MIR3 SINE MIR -29 179 139 198 208 0 0 chr12 5672250 5672298 -138610191 + CT-rich Low_complexity Low_complexity 2 49 0 194 73 55 18 chr12 5674516 5674571 -138607918 + (CGCGG)n Simple_repeat Simple_repeat 1 57 0 471 18 0 0 chr12 5675095 5675151 -138607338 + (CA)n Simple_repeat Simple_repeat 2 57 0 306 0 0 0 chr12 5677011 5677045 -138605444 + (TG)n Simple_repeat Simple_repeat 2 35 0 314 319 43 7 chr12 5678928 5679069 -138603420 + MIR SINE MIR 8 153 -109 476 230 66 71 chr12 5681219 5681415 -138601074 + MIR3 SINE MIR 8 202 -6 221 221 301 26 chr12 5681758 5681871 -138600618 - MIR SINE MIR -16 246 103 422 193 73 37 chr12 5683218 5683327 -138599162 + MIR3 SINE MIR 77 189 -19 225 324 106 47 chr12 5683623 5683793 -138598696 + MIR3 SINE MIR 12 191 -17 248 235 244 17 chr12 5684109 5684224 -138598265 + L2 LINE L2 3173 3313 0 183 298 64 43 chr12 5685364 5685458 -138597031 - L2 LINE L2 -40 3273 3178 211 188 16 16 chr12 5686393 5686457 -138596032 + GA-rich Low_complexity Low_complexity 1 64 0 230 284 125 11 chr12 5687210 5687298 -138595191 - L2 LINE L2 -540 2774 2677 221 265 15 0 chr12 5687320 5687388 -138595101 + (TGAA)n Simple_repeat Simple_repeat 3 71 0 420 20 0 0 chr12 5687827 5687876 -138594613 + (TG)n Simple_repeat Simple_repeat 2 50 0 368 204 194 0 chr12 5688174 5688272 -138594217 + MER5B DNA MER1_type 61 177 -1 211 282 64 39 chr12 5688668 5688746 -138593743 - MIR SINE MIR -31 231 152 284 250 201 8 chr12 5690037 5690191 -138592298 + MIR SINE MIR 42 228 -34 291 325 149 30 chr12 5691446 5691714 -138590775 - L2 LINE L2 -3 3269 2970 240 328 90 0 chr12 5693138 5693272 -138589217 - MIR SINE MIR 0 262 117 597 275 15 35 chr12 5693281 5693481 -138589008 + L2 LINE L2 3118 3313 0 283 321 28 46 chr12 5693473 5693582 -138588907 - MIR SINE MIR -153 109 3 * 336 150 17 17 chr12 5693679 5693739 -138588750 + MIR SINE MIR 116 175 -87 346 292 98 76 chr12 5694028 5694212 -138588277 - L1ME4a LINE L1 -2 6119 5940 1498 191 3 31 chr12 5694212 5694531 -138587958 - AluJo SINE Alu -2 310 1 346 292 98 76 chr12 5694531 5694624 -138587865 - L1ME4a LINE L1 -181 5940 5850 2351 68 0 7 chr12 5694624 5694933 -138587556 - AluSc SINE Alu -2 307 1 346 292 98 76 chr12 5694933 5695165 -138587324 - L1ME4a LINE L1 -271 5850 5598 921 265 28 16 chr12 5695458 5695711 -138586778 + MIR SINE MIR 5 260 -2 1914 174 67 59 chr12 5696568 5697029 -138585460 - MLT1C LTR MaLR 0 467 3 344 321 65 27 chr12 5697403 5697587 -138584902 + MIR3 SINE MIR 3 193 -15 459 0 0 0 chr12 5698072 5698123 -138584366 + (CA)n Simple_repeat Simple_repeat 2 52 0 406 222 9 46 chr12 5698732 5698840 -138583649 - MER20B DNA MER1_type -677 106 3 201 39 0 0 chr12 5699143 5699169 -138583320 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 557 301 165 54 chr12 5699970 5700528 -138581961 + L2 LINE L2 1988 2607 -707 308 356 22 85 chr12 5700598 5701090 -138581399 + L2 LINE L2 2812 3272 0 246 128 0 0 chr12 5701396 5701435 -138581054 + (CA)n Simple_repeat Simple_repeat 1 39 0 2670 148 26 16 chr12 5702552 5703046 -138579443 - L1MC2 LINE L1 0 6344 5846 418 221 11 21 chr12 5704597 5704692 -138577797 - MER117 DNA MER1_type 0 197 104 443 253 62 14 chr12 5704697 5704843 -138577646 - MER117 DNA MER1_type -43 154 2 442 285 93 89 chr12 5704843 5705089 -138577400 + MIR SINE MIR 8 254 -8 265 211 46 92 chr12 5705165 5705274 -138577215 - L3b LINE CR1 -250 1333 1230 234 359 34 83 chr12 5705848 5706113 -138576376 - L2 LINE L2 -78 3194 2943 477 239 0 0 chr12 5706342 5706430 -138576059 + MIR3 SINE MIR 70 157 -51 182 241 52 35 chr12 5706724 5706782 -138575707 - L2 LINE L2 -1 3271 3213 422 190 13 13 chr12 5706889 5706967 -138575522 + Tigger5 DNA MER2_type 1 78 -2245 285 282 13 0 chr12 5706967 5707045 -138575444 - Tigger5 DNA MER2_type -3 2320 2242 245 180 328 0 chr12 5707035 5707096 -138575393 + Tigger5 DNA MER2_type 2242 2322 -1 * 357 182 149 33 chr12 5707097 5707218 -138575271 - MER5A DNA MER1_type -54 135 1 313 243 9 90 chr12 5707552 5707663 -138574826 - MIR3 SINE MIR -22 186 85 249 253 0 46 chr12 5708053 5708140 -138574349 - MIR SINE MIR -6 256 174 424 268 0 47 chr12 5708480 5708607 -138573882 - MIR3 SINE MIR -83 125 5 2280 91 3 0 chr12 5709489 5709797 -138572692 + AluSg1 SINE Alu 1 309 0 310 286 22 11 chr12 5710164 5710255 -138572234 + MIR SINE MIR 56 147 -61 1787 166 0 0 chr12 5711377 5711679 -138570810 + AluJb SINE Alu 1 302 -10 236 347 29 23 chr12 5913138 5913311 -138369178 + MIR SINE MIR 54 227 -35 228 228 35 0 chr12 5914193 5914250 -138368239 - MIR3 SINE MIR -49 159 101 1295 233 62 48 chr12 5914275 5914773 -138367716 + MLT1D LTR MaLR 1 505 0 189 0 0 0 chr12 5916682 5916703 -138365786 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 219 36 0 0 chr12 5916702 5916730 -138365759 + (GA)n Simple_repeat Simple_repeat 1 28 0 449 305 7 20 chr12 5917143 5917294 -138365195 + MIR SINE MIR 49 197 -65 784 310 89 43 chr12 5917372 5919145 -138363344 - L1MEd LINE L1 -743 5386 3533 21 36 0 0 chr12 5919209 5919237 -138363252 + AT_rich Low_complexity Low_complexity 1 28 0 1294 188 30 4 chr12 5919242 5919476 -138363013 + AluJo SINE Alu 45 284 -28 22 0 0 0 chr12 5919600 5919622 -138362867 + AT_rich Low_complexity Low_complexity 1 22 0 1640 283 32 45 chr12 5919647 5920451 -138362038 - L1MEd LINE L1 -2846 3283 2495 2471 133 3 3 chr12 5920451 5920812 -138361677 - THE1B LTR MaLR -3 361 1 1640 283 32 45 chr12 5920812 5921046 -138361443 - L1MEd LINE L1 -3634 2495 2259 431 257 46 135 chr12 5921277 5921604 -138360885 - L1ME3A LINE L1 -220 5950 5653 1219 157 4 58 chr12 5921697 5921939 -138360550 - MER46A DNA MER2_type -4 232 4 481 231 56 65 chr12 5921960 5922281 -138360208 - L1MEd LINE L1 -5017 1102 785 247 270 18 81 chr12 5922876 5922987 -138359502 + MLT1L LTR MaLR 20 123 -492 562 247 141 38 chr12 5923009 5923272 -138359217 + MLT1L LTR MaLR 322 611 -4 507 301 87 41 chr12 5923457 5923723 -138358766 + MLT1I LTR MaLR 114 391 -18 252 0 0 0 chr12 5924137 5924165 -138358324 + (A)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr12 5924751 5924779 -138357710 + (CA)n Simple_repeat Simple_repeat 2 29 0 1346 247 56 18 chr12 5924829 5925278 -138357211 - Charlie4a DNA MER1_type -17 491 26 264 311 142 0 chr12 5925756 5925904 -138356585 - MIR SINE MIR -6 256 88 202 333 0 0 chr12 5926058 5926121 -138356368 - L3 LINE CR1 -156 1421 1359 476 274 154 48 chr12 5926192 5926549 -138355940 - L2 LINE L2 -4 3309 2915 3111 190 40 49 chr12 5926735 5927214 -138355275 + MER21B LTR ERV1 1 474 -389 2289 122 0 0 chr12 5927214 5927525 -138354964 - AluSq SINE Alu -2 311 1 3111 190 40 49 chr12 5927525 5927719 -138354770 + MER21B LTR ERV1 474 668 -195 461 132 95 3 chr12 5927718 5927807 -138354682 + MER21A LTR ERV1 773 912 0 * 6189 134 12 7 chr12 5927984 5928924 -138353565 + LTR5 LTR ERVK 1 944 -25 1456 270 123 83 chr12 5929000 5930363 -138352126 - L2 LINE L2 -621 2693 1276 332 236 173 0 chr12 5930607 5930717 -138351772 + MIR SINE MIR 63 191 -71 1491 120 87 40 chr12 5930726 5931002 -138351487 + Tigger2a DNA MER2_type 1 289 -145 11417 183 18 8 chr12 5931036 5932766 -138349723 - L1PB2 LINE L1 0 6151 4376 180 0 0 0 chr12 5932766 5932786 -138349703 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 11417 183 18 8 chr12 5932786 5934409 -138348080 - L1PB2 LINE L1 -1775 4376 2771 7127 119 52 45 chr12 5934410 5936236 -138346253 + L1PB2 LINE L1 1664 3501 -3361 867 191 20 0 chr12 5936239 5936386 -138346103 + Tigger2a DNA MER2_type 294 443 -1 604 259 27 84 chr12 5936629 5936926 -138345563 + MLT1J LTR MaLR 4 283 -228 625 276 33 0 chr12 5937063 5937215 -138345274 + MER115 DNA AcHobo 152 308 -385 304 303 155 13 chr12 5937225 5937380 -138345109 - L2 LINE L2 -252 3061 2885 217 238 0 0 chr12 5939077 5939119 -138343370 + CT-rich Low_complexity Low_complexity 3 44 0 199 373 62 8 chr12 5939595 5939793 -138342696 + MIR SINE MIR 2 212 -50 829 164 14 0 chr12 5940396 5940542 -138341947 - FAM SINE Alu -7 42 1 2601 137 29 14 chr12 5940988 5941405 -138341084 + MSTB LTR MaLR 4 426 0 200 236 258 0 chr12 5942235 5942324 -138340165 - MIR SINE MIR -115 147 36 182 266 71 53 chr12 5942442 5942555 -138339934 + MIR SINE MIR 16 130 -132 6174 97 17 2 chr12 5943031 5943996 -138338493 + L1PB1 LINE L1 5137 6113 -38 218 176 0 0 chr12 5943996 5944030 -138338459 + polypurine Low_complexity Low_complexity 2 35 0 839 89 11 56 chr12 5944031 5944211 -138338278 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 283 267 13 0 chr12 5944769 5944844 -138337645 + MIR SINE MIR 78 153 -109 1506 193 102 55 chr12 5944948 5945436 -138337053 + MER69 DNA AcHobo 2013 2523 -3 1971 119 29 10 chr12 5946333 5946643 -138335846 - L1PB1 LINE L1 -17 6134 5819 2480 60 0 13 chr12 5946643 5946945 -138335544 - AluY SINE Alu -13 298 1 1029 92 0 7 chr12 5946945 5947087 -138335402 - L1PB1 LINE L1 -544 5607 5467 388 319 63 49 chr12 5947836 5948203 -138334286 + HAL1b LINE L1 219 590 -758 983 230 84 16 chr12 5948212 5948548 -138333941 - LTR16A LTR ERVL 0 457 81 1347 160 29 19 chr12 5948826 5949129 -138333360 - MER61C LTR ERV1 -30 404 1 257 288 0 25 chr12 5949713 5949831 -138332658 + L1ME4a LINE L1 6007 6121 0 2035 170 67 22 chr12 5950317 5950723 -138331766 + MER21B LTR ERV1 1 424 -439 368 232 43 70 chr12 5950724 5950909 -138331580 + L2 LINE L2 3112 3291 -22 2488 45 7 32 chr12 5950914 5951223 -138331266 - AluY SINE Alu -10 301 1 3036 127 2 7 chr12 5951319 5951782 -138330707 + MER4C LTR ERV1 3 463 -2 2399 85 3 0 chr12 5952352 5952645 -138329844 + AluSp SINE Alu 1 294 -19 295 216 27 27 chr12 5953103 5953177 -138329312 - MER117 DNA MER1_type -119 78 5 642 238 101 11 chr12 5953238 5953427 -138329062 + L2 LINE L2 3089 3294 -19 1008 66 0 0 chr12 5953427 5953564 -138328925 + (GGAGA)n Simple_repeat Simple_repeat 5 141 0 21 0 0 0 chr12 5953614 5953635 -138328854 + AT_rich Low_complexity Low_complexity 1 21 0 526 308 45 0 chr12 5954568 5954789 -138327700 + MIR SINE MIR 29 259 -3 347 304 70 18 chr12 5957622 5957793 -138324696 - MIR SINE MIR -72 190 11 182 150 25 0 chr12 5957930 5957970 -138324519 + GA-rich Low_complexity Low_complexity 5 45 0 206 231 0 0 chr12 5958413 5958452 -138324037 + (CA)n Simple_repeat Simple_repeat 1 39 0 240 267 58 42 chr12 5958452 5958572 -138323917 - L3b LINE CR1 -184 1399 1278 667 198 81 137 chr12 5958926 5959078 -138323411 + MER112 DNA MER1_type 23 157 -103 2028 62 11 19 chr12 5959078 5959338 -138323151 - AluY SINE Alu -9 302 45 667 198 81 137 chr12 5959338 5959433 -138323056 + MER112 DNA MER1_type 157 256 -4 330 277 106 8 chr12 5959746 5959927 -138322562 + MIR SINE MIR 62 262 0 182 288 38 25 chr12 5960504 5960584 -138321905 + MIR SINE MIR 63 143 -65 261 244 12 24 chr12 5961412 5961494 -138320995 - MIR3 SINE MIR -29 179 99 218 32 32 0 chr12 5962631 5962662 -138319827 + (TC)n Simple_repeat Simple_repeat 2 33 0 241 236 197 8 chr12 5963493 5963620 -138318869 + L2 LINE L2 3159 3309 -4 2011 171 32 6 chr12 5966357 5966696 -138315793 - MER7A DNA MER2_type 0 346 1 315 288 48 16 chr12 5967833 5967958 -138314531 - MIR SINE MIR -34 228 100 1078 213 4 30 chr12 5969768 5969998 -138312491 - MER58A DNA MER1_type 0 224 1 321 280 119 42 chr12 5970473 5970709 -138311780 + L2 LINE L2 2606 2859 -455 399 233 11 116 chr12 5971073 5971262 -138311227 + MIR SINE MIR 93 261 -1 401 311 102 0 chr12 5971361 5971528 -138310961 + MIR3 SINE MIR 25 208 0 316 368 42 58 chr12 5973684 5974062 -138308427 + L2 LINE L2 2897 3268 -4 2649 49 0 0 chr12 5974313 5974617 -138307872 + AluY SINE Alu 1 304 -7 283 338 49 21 chr12 5975821 5975963 -138306526 - L2 LINE L2 0 3272 3127 223 286 170 20 chr12 5977542 5977689 -138304800 - L3 LINE CR1 -6 1571 1403 254 294 109 50 chr12 5978065 5978184 -138304305 - L2 LINE L2 -1 3271 3146 228 275 43 14 chr12 5979373 5979442 -138303047 + MIR SINE MIR 52 122 -86 269 275 30 46 chr12 5979769 5979900 -138302589 - MIR3 SINE MIR -45 163 35 310 273 13 0 chr12 5980240 5980317 -138302172 + GA-rich Low_complexity Low_complexity 1 78 0 1582 67 91 0 chr12 5981051 5981260 -138301229 - MER30 DNA MER1_type 0 230 3 1526 242 116 21 chr12 5981750 5981842 -138300647 - LTR48B LTR ERV1 0 644 562 2157 83 35 3 chr12 5981842 5982131 -138300358 + AluSq SINE Alu 1 298 -15 1526 242 116 21 chr12 5982131 5982554 -138299935 - LTR48B LTR ERV1 -82 562 80 332 216 41 41 chr12 5982600 5982697 -138299792 - MER34 LTR ERV1 -445 97 1 225 227 91 23 chr12 5982697 5982785 -138299704 + L2 LINE L2 3133 3226 -46 189 318 84 9 chr12 5983138 5983245 -138299244 - L2 LINE L2 -3 3310 3196 229 325 53 30 chr12 5983519 5983688 -138298801 - L2 LINE L2 -565 2749 2577 420 287 43 37 chr12 5984626 5984790 -138297699 - MIR SINE MIR -50 212 48 184 129 0 0 chr12 5985202 5985233 -138297256 + L2 LINE L2 3238 3268 -4 1792 177 0 6 chr12 5985491 5985802 -138296687 + AluJb SINE Alu 1 309 -3 201 312 26 13 chr12 5985887 5985964 -138296525 - L3 LINE CR1 -14 1563 1486 1771 174 24 10 chr12 5986134 5986304 -138296185 - AluJo SINE Alu -10 302 125 240 35 0 0 chr12 5986304 5986333 -138296156 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1771 174 24 10 chr12 5986333 5986460 -138296029 - AluJo SINE Alu -187 125 1 249 274 55 14 chr12 5986462 5986535 -138295954 - L2 LINE L2 -26 3246 3171 336 306 100 12 chr12 5986877 5987047 -138295442 + L1ME LINE L1 5512 5696 -425 551 134 0 0 chr12 5987050 5987132 -138295357 + AluJ/FLAM SINE Alu 21 102 -210 485 249 83 83 chr12 5987804 5988009 -138294480 - MIR SINE MIR -38 224 20 3013 107 30 0 chr12 5988034 5988474 -138294015 - L1PA13 LINE L1 0 6163 5711 2011 143 7 0 chr12 5989296 5989590 -138292899 - AluSx SINE Alu -13 299 4 181 319 208 0 chr12 5990110 5990254 -138292235 - MIR3 SINE MIR -29 179 6 1328 202 90 42 chr12 5991026 5991383 -138291106 + MLT1A2 LTR MaLR 1 374 0 327 276 39 24 chr12 5991405 5991532 -138290957 + MIR SINE MIR 134 262 0 391 78 0 31 chr12 5991611 5991675 -138290814 + MADE1 DNA Mariner 19 80 0 184 291 79 63 chr12 5991699 5991826 -138290663 - L3 LINE CR1 -3 1574 1446 407 339 58 5 chr12 5991959 5992183 -138290306 + MIR SINE MIR 5 240 -22 460 307 126 53 chr12 5992611 5993041 -138289448 + HAL1 LINE L1 4 464 -2043 1996 259 75 37 chr12 5993055 5993194 -138289295 + HAL1 LINE L1 1074 1206 -1301 1785 172 0 14 chr12 5993194 5993491 -138288998 - AluJb SINE Alu -19 293 1 1996 259 75 37 chr12 5993491 5994193 -138288296 + HAL1 LINE L1 1206 1947 -560 2526 68 0 0 chr12 5994601 5994908 -138287581 + AluY SINE Alu 1 307 -4 554 343 82 8 chr12 5994974 5995214 -138287275 - L2 LINE L2 -695 2619 2341 210 37 0 0 chr12 5995214 5995241 -138287248 + (GGA)n Simple_repeat Simple_repeat 2 28 0 554 343 82 8 chr12 5995241 5995367 -138287122 - L2 LINE L2 -973 2341 2226 21 0 0 0 chr12 5995675 5995696 -138286793 + AT_rich Low_complexity Low_complexity 1 21 0 718 277 100 31 chr12 5997236 5997626 -138284863 - MER113 DNA MER1_type? -104 417 1 212 314 0 0 chr12 5997693 5997744 -138284745 + (CA)n Simple_repeat Simple_repeat 2 52 0 250 304 126 33 chr12 5997869 5998083 -138284406 + MARNA DNA Mariner 175 408 -178 280 222 48 0 chr12 5998397 5998460 -138284029 - MIR SINE MIR -158 104 39 3645 126 8 4 chr12 5998465 5998990 -138283499 + MER1A DNA MER1_type 1 527 0 236 279 58 19 chr12 5999468 5999572 -138282917 - MIR3 SINE MIR -11 197 90 483 156 31 4 chr12 6000804 6001042 -138281447 + (TA)n Simple_repeat Simple_repeat 1 244 0 621 203 6 0 chr12 6001055 6001405 -138281084 + (TA)n Simple_repeat Simple_repeat 1 352 0 417 170 29 6 chr12 6001416 6001587 -138280902 + (TA)n Simple_repeat Simple_repeat 1 175 0 236 176 0 39 chr12 6001622 6001673 -138280816 + LTR66 LTR ERVL 391 439 -171 375 23 0 0 chr12 6001754 6001798 -138280691 + (CA)n Simple_repeat Simple_repeat 1 44 0 2154 112 7 3 chr12 6001910 6002206 -138280283 - AluSg SINE Alu -13 297 1 376 269 59 59 chr12 6002414 6002600 -138279889 + LTR67 LTR ERVL 363 548 -9 255 220 100 60 chr12 6003307 6003407 -138279082 + MIR SINE MIR 18 121 -141 219 69 0 0 chr12 6004152 6004181 -138278308 + (TG)n Simple_repeat Simple_repeat 1 29 0 1053 260 136 68 chr12 6005152 6005798 -138276691 + MER21B LTR ERV1 24 713 -150 1521 211 40 3 chr12 6007093 6007443 -138275046 - MLT1A1 LTR MaLR -2 363 1 347 291 36 0 chr12 6007786 6007951 -138274538 + (CACAC)n Simple_repeat Simple_repeat 5 175 0 345 319 34 15 chr12 6008000 6008526 -138273963 + (CACAC)n Simple_repeat Simple_repeat 1 535 0 724 301 99 17 chr12 6008879 6009224 -138273265 - LTR16C LTR ERVL -30 461 89 464 272 50 28 chr12 6009358 6009538 -138272951 - MIR SINE MIR -65 197 14 229 169 138 15 chr12 6010391 6010414 -138272075 - REP3 LTR ERV -359 203 173 411 240 208 42 chr12 6010414 6010606 -138271883 + MLT1J2 LTR MaLR 4 227 -223 201 74 0 0 chr12 6012213 6012240 -138270249 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 240 228 0 0 chr12 6012744 6012801 -138269688 + GA-rich Low_complexity Low_complexity 2 58 0 1844 155 30 0 chr12 6013628 6013931 -138268558 + AluSx SINE Alu 1 312 0 309 109 0 0 chr12 6015182 6015237 -138267252 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 199 222 22 0 chr12 6015276 6015321 -138267168 - MIR SINE MIR -16 246 201 578 302 105 70 chr12 6015561 6016498 -138265991 - L2 LINE L2 -6 3307 2335 255 270 250 0 chr12 6016765 6016865 -138265624 + MIR SINE MIR 19 143 -65 1538 174 0 24 chr12 6018748 6019036 -138263453 + AluJo SINE Alu 1 281 -31 702 246 23 17 chr12 6019425 6019600 -138262889 + MIR SINE MIR 63 238 -24 236 247 0 25 chr12 6019607 6019688 -138262801 + (CGTG)n Simple_repeat Simple_repeat 1 79 0 263 320 191 0 chr12 6019733 6019880 -138262609 + MIR SINE MIR 71 245 -17 256 271 93 86 chr12 6021632 6021772 -138260717 - L2 LINE L2 -7 3265 3125 513 267 103 44 chr12 6021822 6022095 -138260394 + MLT1I LTR MaLR 114 402 -7 546 312 158 6 chr12 6022198 6022528 -138259961 + L2 LINE L2 2929 3308 -5 189 256 23 0 chr12 6023623 6023666 -138258823 + L2 LINE L2 3266 3309 -4 348 253 44 11 chr12 6025815 6025906 -138256583 + L3 LINE CR1 1419 1512 -65 270 0 0 0 chr12 6026537 6026567 -138255922 + (CA)n Simple_repeat Simple_repeat 1 30 0 414 57 0 0 chr12 6027543 6027596 -138254893 + (CA)n Simple_repeat Simple_repeat 2 54 0 262 260 14 14 chr12 6027597 6027670 -138254819 + G-rich Low_complexity Low_complexity 1 73 0 255 61 0 0 chr12 6028277 6028310 -138254179 + (TG)n Simple_repeat Simple_repeat 2 34 0 410 175 48 16 chr12 6028475 6028576 -138253913 + MER5A DNA MER1_type 4 109 -80 254 322 43 26 chr12 6028795 6028910 -138253579 - MIR3 SINE MIR -7 201 85 281 294 46 37 chr12 6028969 6029078 -138253411 - MIR3 SINE MIR -39 169 60 2345 88 0 0 chr12 6029165 6029472 -138253017 - AluY SINE Alu -4 307 1 649 272 160 19 chr12 6030265 6030826 -138251663 - L2 LINE L2 0 3313 2605 7189 52 6 2 chr12 6031361 6032324 -138250165 + L1PA6 LINE L1 5187 6152 -2 359 255 0 11 chr12 6032423 6032517 -138249972 + MER94 DNA DNA 8 100 -34 195 100 0 0 chr12 6032926 6032956 -138249533 + (ATG)n Simple_repeat Simple_repeat 3 32 0 2185 226 181 25 chr12 6032993 6033947 -138248542 + L2 LINE L2 1933 3070 -243 225 0 0 0 chr12 6034001 6034026 -138248463 + (CA)n Simple_repeat Simple_repeat 2 26 0 1748 264 70 27 chr12 6034288 6035346 -138247143 - L1ME3A LINE L1 -315 5838 4722 350 299 84 13 chr12 6035407 6035561 -138246928 - L1ME3A LINE L1 -4373 1937 1773 782 308 61 17 chr12 6035573 6036222 -138246267 - L1ME3A LINE L1 -4585 1725 957 848 103 0 0 chr12 6036223 6036339 -138246150 + AluSg/x SINE Alu 178 293 -17 234 62 0 0 chr12 6036352 6036384 -138246105 + (TG)n Simple_repeat Simple_repeat 2 33 0 214 235 12 24 chr12 6036384 6036469 -138246020 + (TA)n Simple_repeat Simple_repeat 2 85 0 249 304 141 44 chr12 6036572 6036842 -138245647 - L1ME3A LINE L1 -5307 812 517 419 345 55 63 chr12 6036983 6037363 -138245126 - L1ME3A LINE L1 -5739 380 4 438 254 116 7 chr12 6037383 6037521 -138244968 + L2 LINE L2 3160 3312 -1 250 226 151 21 chr12 6037680 6037773 -138244716 + MIR3 SINE MIR 87 191 -17 346 328 9 26 chr12 6038980 6039096 -138243393 + MIR SINE MIR 50 163 -99 243 284 125 97 chr12 6039544 6039720 -138242769 + MIR SINE MIR 62 242 -20 221 360 88 8 chr12 6039925 6040050 -138242439 - L2 LINE L2 -5 3267 3133 1751 120 11 35 chr12 6040562 6040714 -138241775 - AluSc SINE Alu -32 277 134 285 98 0 0 chr12 6040714 6040755 -138241734 + (TG)n Simple_repeat Simple_repeat 2 42 0 1751 120 11 35 chr12 6040755 6040886 -138241603 - AluSc SINE Alu -175 134 1 252 292 67 8 chr12 6041043 6041163 -138241326 - L2 LINE L2 -7 3265 3139 351 297 93 17 chr12 6041654 6041772 -138240717 + MIR SINE MIR 18 144 -64 237 267 46 61 chr12 6041889 6042020 -138240469 + MIR SINE MIR 109 237 -25 1046 168 0 5 chr12 6042346 6042531 -138239958 - FRAM SINE Alu 0 176 1 3102 214 17 12 chr12 6042532 6043186 -138239303 - L1ME1 LINE L1 -8 6158 5502 2769 143 49 92 chr12 6043196 6043803 -138238686 - L1MC3 LINE L1 -7 7778 7198 393 177 57 12 chr12 6043803 6043898 -138238591 - MLT1F1 LTR MaLR -442 125 35 298 292 88 40 chr12 6044310 6044536 -138237953 + MIR SINE MIR 26 262 0 393 375 73 30 chr12 6044542 6044870 -138237619 - L2 LINE L2 -5 3267 2926 196 344 57 13 chr12 6045054 6045211 -138237278 - MIR3 SINE MIR -5 203 40 337 340 111 34 chr12 6045873 6046261 -138236228 + L2 LINE L2 1182 1599 -1715 794 185 12 56 chr12 6046278 6046440 -138236049 - MER5A DNA MER1_type -5 184 30 455 313 82 10 chr12 6046528 6046723 -138235766 - MIR SINE MIR 0 262 54 297 326 73 22 chr12 6046894 6047072 -138235417 - L2 LINE L2 -1354 1960 1774 565 292 97 38 chr12 6047124 6047412 -138235077 + L2 LINE L2 2196 2500 -814 221 292 212 26 chr12 6047545 6047658 -138234831 + L2 LINE L2 3136 3269 -3 324 125 0 62 chr12 6048431 6048495 -138233994 - Alu SINE Alu 0 302 243 810 275 12 33 chr12 6049068 6049312 -138233177 + MIR SINE MIR 23 261 -1 552 175 19 0 chr12 6049312 6049472 -138233017 + (CAT)n Simple_repeat Simple_repeat 1 163 0 859 154 0 17 chr12 6049514 6049868 -138232621 + (CAT)n Simple_repeat Simple_repeat 1 347 0 187 300 67 56 chr12 6050886 6050976 -138231513 + MIR3 SINE MIR 69 159 -49 376 94 0 19 chr12 6051002 6051055 -138231434 + Tigger5 DNA MER2_type 1 52 -2271 422 207 12 0 chr12 6051070 6051152 -138231337 + Tigger5 DNA MER2_type 2239 2321 -2 463 356 62 6 chr12 6051224 6051625 -138230864 + L2 LINE L2 2762 3219 -94 229 287 161 35 chr12 6052168 6052342 -138230147 - L3b LINE CR1 -208 1375 1180 375 233 63 63 chr12 6052597 6052756 -138229733 - MER5A DNA MER1_type 0 189 31 204 385 28 18 chr12 6053720 6053829 -138228660 + L3b LINE CR1 1275 1384 -199 206 313 30 0 chr12 6055019 6055086 -138227403 + (CATG)n Simple_repeat Simple_repeat 2 70 0 807 183 0 0 chr12 6055167 6055347 -138227142 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 597 286 25 37 chr12 6055361 6055602 -138226887 - MIR SINE MIR -12 250 13 189 0 0 0 chr12 6056648 6056669 -138225820 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 1713 248 82 19 chr12 6057717 6058181 -138224308 + MER77 LTR ERV1 77 569 -36 8567 137 16 1 chr12 6058486 6060624 -138221865 - L1PA10 LINE L1 -9 6159 4002 284 307 58 14 chr12 6061020 6061159 -138221330 + MIR SINE MIR 17 159 -69 275 254 0 0 chr12 6061216 6061271 -138221218 - L2 LINE L2 -8 3264 3210 198 180 0 66 chr12 6061354 6061415 -138221074 + L3 LINE CR1 698 754 -823 338 274 53 79 chr12 6061440 6061468 -138221021 - MIR SINE MIR -44 218 191 1526 181 10 36 chr12 6061468 6061777 -138220712 - AluJo SINE Alu -11 301 1 338 274 53 79 chr12 6061777 6061938 -138220551 - MIR SINE MIR -71 191 34 192 40 0 0 chr12 6062452 6062477 -138220012 + (TG)n Simple_repeat Simple_repeat 1 25 0 267 215 0 0 chr12 6063518 6063583 -138218906 + (TG)n Simple_repeat Simple_repeat 1 65 0 308 321 36 14 chr12 6063673 6063813 -138218676 + L3 LINE CR1 235 377 -1200 387 247 113 57 chr12 6063868 6064115 -138218374 - L1MC4a LINE L1 -1642 6166 5906 203 250 125 0 chr12 6064126 6064190 -138218299 + L3 LINE CR1 439 510 -1067 225 140 0 123 chr12 6064507 6064564 -138217925 + L2 LINE L2 3262 3311 -2 513 287 160 0 chr12 6065641 6065829 -138216660 + MIR SINE MIR 42 259 -3 244 229 186 0 chr12 6065944 6066014 -138216475 + L2 LINE L2 3190 3272 -41 222 118 0 0 chr12 6066031 6066065 -138216424 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 334 240 140 0 chr12 6066622 6066722 -138215767 + MIR SINE MIR 33 146 -62 292 266 180 47 chr12 6067353 6067586 -138214903 + L1ME4a LINE L1 5856 6119 -2 2109 138 0 0 chr12 6067709 6068020 -138214469 + AluSx SINE Alu 1 311 -1 1500 325 168 21 chr12 6069549 6070044 -138212445 + L3 LINE CR1 506 927 -650 6571 89 9 3 chr12 6070044 6071253 -138211236 + L1PA11 LINE L1 4961 6174 0 1500 325 168 21 chr12 6071253 6071686 -138210803 + L3 LINE CR1 927 1570 -7 299 273 47 47 chr12 6072163 6072291 -138210198 + MIR3 SINE MIR 78 205 -3 384 97 0 0 chr12 6073251 6073313 -138209176 + (TC)n Simple_repeat Simple_repeat 1 62 0 283 306 153 0 chr12 6075242 6075353 -138207136 - L2 LINE L2 -8 3264 3137 391 274 174 28 chr12 6075770 6075982 -138206507 + MIR SINE MIR 7 249 -13 1595 169 36 10 chr12 6076440 6076742 -138205747 + AluJb SINE Alu 1 310 -2 230 247 195 0 chr12 6077329 6077406 -138205083 - L2 LINE L2 -14 3299 3208 317 360 95 16 chr12 6078246 6078488 -138204001 + L3b LINE CR1 1262 1522 -61 284 301 27 70 chr12 6078656 6078842 -138203647 - MIR SINE MIR -57 205 28 180 0 0 0 chr12 6079748 6079768 -138202721 + (T)n Simple_repeat Simple_repeat 1 20 0 259 224 0 0 chr12 6080735 6080784 -138201705 + L2 LINE L2 3251 3299 -14 1058 289 109 63 chr12 6081833 6081985 -138200504 - L2 LINE L2 -6 3307 3163 2358 94 0 0 chr12 6081985 6082294 -138200195 + AluSg SINE Alu 1 309 -1 1058 289 109 63 chr12 6082294 6082559 -138199930 - L2 LINE L2 -150 3163 2912 1838 137 14 7 chr12 6082559 6082851 -138199638 + AluSx SINE Alu 1 294 -18 1058 289 109 63 chr12 6082851 6083255 -138199234 - L2 LINE L2 -401 2912 2440 2167 285 123 9 chr12 6083842 6085042 -138197447 + L2 LINE L2 1950 3296 -17 318 26 0 0 chr12 6085183 6085222 -138197267 + (GA)n Simple_repeat Simple_repeat 2 40 0 203 257 29 0 chr12 6085229 6085299 -138197190 + GA-rich Low_complexity Low_complexity 2 73 0 373 267 125 8 chr12 6085449 6085569 -138196920 + MIR3 SINE MIR 40 173 -35 243 0 0 0 chr12 6085672 6085699 -138196790 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 707 279 59 28 chr12 6085727 6085972 -138196517 + MIR SINE MIR 3 251 -11 575 271 30 96 chr12 6086191 6086494 -138195995 + L1M4 LINE L1 2610 2892 -3254 2042 123 0 0 chr12 6086496 6086789 -138195700 + AluSx SINE Alu 1 293 -19 409 183 0 0 chr12 6086847 6086918 -138195571 + L2 LINE L2 3207 3277 -36 1273 311 75 23 chr12 6087004 6088089 -138194400 + L1M4 LINE L1 3047 4187 -1959 2167 110 3 0 chr12 6088089 6088398 -138194091 + AluY SINE Alu 1 310 -1 25719 72 6 0 chr12 6088410 6091695 -138190794 + L1P LINE L1 5 3307 -2839 228 208 21 0 chr12 6091695 6091743 -138190746 - Alu SINE Alu -221 82 34 194 310 80 18 chr12 6091849 6091962 -138190527 + L2 LINE L2 2133 2252 -1062 434 96 108 12 chr12 6092025 6092108 -138190381 - Alu SINE Alu -6 304 214 223 393 74 0 chr12 6092687 6092822 -138189667 + L2 LINE L2 2920 3064 -208 27 0 0 0 chr12 6092956 6092983 -138189506 + AT_rich Low_complexity Low_complexity 1 27 0 352 317 42 0 chr12 6093089 6093231 -138189258 + L1ME3A LINE L1 2539 2686 -3460 507 218 174 3 chr12 6093290 6093520 -138188969 + L1P4 LINE L1 5171 5431 -735 293 303 57 14 chr12 6093537 6093748 -138188741 + L1ME3A LINE L1 4942 5161 -985 * 787 305 79 16 chr12 6093735 6094230 -138188259 + L1ME3A LINE L1 5425 5950 -220 1822 129 6 39 chr12 6094472 6094783 -138187706 - AluJo SINE Alu -10 302 2 206 274 9 151 chr12 6094858 6094964 -138187525 - L3 LINE CR1 -59 1518 1428 292 276 71 39 chr12 6095463 6095590 -138186899 - L3 LINE CR1 -143 1434 1304 285 29 0 0 chr12 6095626 6095660 -138186829 + (TG)n Simple_repeat Simple_repeat 2 35 0 180 186 29 43 chr12 6096216 6096286 -138186203 + GA-rich Low_complexity Low_complexity 5 73 0 1548 248 46 37 chr12 6097137 6097732 -138184757 + L2 LINE L2 2704 3300 -13 267 316 0 11 chr12 6097740 6097835 -138184654 - MIR SINE MIR -102 160 67 262 299 46 11 chr12 6097853 6097940 -138184549 + MIR SINE MIR 32 121 -87 1859 142 75 33 chr12 6097961 6098321 -138184168 + THE1C LTR MaLR 1 375 0 875 298 182 26 chr12 6098820 6099391 -138183098 + L2 LINE L2 2185 2844 -470 617 278 139 22 chr12 6099478 6099701 -138182788 + MIR SINE MIR 6 254 -8 626 288 77 77 chr12 6099712 6100011 -138182478 + L2 LINE L2 2970 3268 -4 560 289 66 53 chr12 6100125 6100353 -138182136 + MLT1J LTR MaLR 6 236 -275 2328 170 31 24 chr12 6101763 6101817 -138180672 + MSTB LTR MaLR 1 53 -373 2480 37 10 0 chr12 6101817 6102112 -138180377 + AluY SINE Alu 1 298 -13 2328 170 31 24 chr12 6102112 6102480 -138180009 + MSTB LTR MaLR 53 426 0 1406 226 133 38 chr12 6103164 6103607 -138178882 + MLT1D LTR MaLR 21 505 0 632 310 99 48 chr12 6103618 6104229 -138178260 - L2 LINE L2 -201 3071 2430 272 198 0 37 chr12 6105552 6105633 -138176856 + CT-rich Low_complexity Low_complexity 5 82 0 328 389 7 0 chr12 6106853 6106997 -138175492 + L1ME4a LINE L1 5779 5923 -198 236 294 56 16 chr12 6107004 6107130 -138175359 + L1ME4a LINE L1 5991 6121 0 736 277 121 51 chr12 6109609 6110039 -138172450 + LTR33A LTR ERVL 64 523 0 1254 241 60 52 chr12 6110114 6110232 -138172257 + LTR16C LTR ERVL 67 183 -308 180 97 0 0 chr12 6110232 6110263 -138172226 + (CA)n Simple_repeat Simple_repeat 2 32 0 1254 241 60 52 chr12 6110263 6110320 -138172169 + LTR16C LTR ERVL 183 238 -253 1541 227 13 37 chr12 6110320 6110694 -138171795 + MLT1A1 LTR MaLR 1 365 0 1254 241 60 52 chr12 6110694 6110936 -138171553 + LTR16C LTR ERVL 238 488 -3 1834 135 0 13 chr12 6112437 6112741 -138169748 - AluJo SINE Alu -8 304 5 351 68 0 0 chr12 6112700 6112744 -138169745 - Alu SINE Alu -256 45 2 2278 216 61 22 chr12 6112766 6113162 -138169327 - MER119 DNA MER1_type -5 578 152 2490 62 7 3 chr12 6113162 6113469 -138169020 + AluY SINE Alu 1 308 -3 2278 216 61 22 chr12 6113469 6113627 -138168862 - MER119 DNA MER1_type -431 152 2 186 43 0 0 chr12 6113887 6113910 -138168579 + (CAA)n Simple_repeat Simple_repeat 2 24 0 278 175 12 0 chr12 6116035 6116115 -138166374 + (CA)n Simple_repeat Simple_repeat 1 81 0 837 266 192 16 chr12 6116394 6116826 -138165663 + LTR33A LTR ERVL 8 515 -8 585 221 207 9 chr12 6117425 6117638 -138164851 + MIR SINE MIR 8 262 0 2405 146 53 27 chr12 6118002 6118413 -138164076 + MSTA LTR MaLR 1 422 -6 399 198 0 99 chr12 6118471 6118572 -138163917 + L1MB8 LINE L1 4018 4108 -2038 1325 83 0 0 chr12 6118573 6118741 -138163748 - AluY SINE Alu -10 301 134 2475 73 0 0 chr12 6118742 6119043 -138163446 - AluY SINE Alu -10 301 1 5196 180 50 39 chr12 6119043 6121034 -138161455 + L1MB8 LINE L1 4099 6110 -68 332 151 21 54 chr12 6121114 6121207 -138161282 + L1MB8 LINE L1 6089 6178 0 352 309 9 9 chr12 6121245 6121355 -138161134 + MIR SINE MIR 16 125 -83 670 255 121 35 chr12 6122888 6123119 -138159370 + MIR SINE MIR 4 254 -8 345 267 84 0 chr12 6125055 6125186 -138157303 - MER103 DNA DNA -2 164 23 2331 106 0 6 chr12 6125576 6125887 -138156602 - AluSx SINE Alu -3 309 1 679 308 145 23 chr12 6126348 6126783 -138155706 - L2 LINE L2 -9 3304 2817 306 0 0 0 chr12 6130534 6130568 -138151921 + (CA)n Simple_repeat Simple_repeat 2 35 0 283 400 7 0 chr12 6130759 6130909 -138151580 + L2 LINE L2 2554 2704 -610 311 305 93 68 chr12 6131382 6131661 -138150828 - L2 LINE L2 -23 3249 2964 558 244 58 6 chr12 6132618 6132774 -138149715 - MIR SINE MIR -19 243 80 214 255 75 47 chr12 6132801 6132907 -138149582 - MIR SINE MIR -143 119 11 270 56 0 0 chr12 6134410 6134446 -138148043 + (TG)n Simple_repeat Simple_repeat 2 37 0 261 292 45 0 chr12 6134645 6134734 -138147755 + MIR SINE MIR 26 118 -90 611 220 31 31 chr12 6137994 6138153 -138144336 + L1MD2 LINE L1 6199 6357 -2 427 232 33 132 chr12 6138529 6138801 -138143688 + MER112 DNA MER1_type 8 252 -8 267 322 0 0 chr12 6138880 6138970 -138143519 + (TG)n Simple_repeat Simple_repeat 1 90 0 195 239 0 0 chr12 6138995 6139062 -138143427 + (TG)n Simple_repeat Simple_repeat 1 67 0 378 327 16 60 chr12 6139409 6139660 -138142829 + MIR SINE MIR 20 259 -3 201 178 22 22 chr12 6139763 6139808 -138142681 + CT-rich Low_complexity Low_complexity 2 46 0 186 71 0 0 chr12 6139808 6139836 -138142653 + (A)n Simple_repeat Simple_repeat 1 28 0 334 215 0 0 chr12 6140492 6140557 -138141932 + MLT1K LTR MaLR 511 575 -13 323 283 243 0 chr12 6140688 6140840 -138141649 - MIR SINE MIR -6 256 68 1772 150 7 29 chr12 6140856 6141162 -138141327 - AluJo SINE Alu -3 309 11 399 182 34 0 chr12 6142384 6142472 -138140017 + L1ME4a LINE L1 5965 6055 -66 * 5416 164 29 41 chr12 6142467 6143902 -138138587 - L1MA10 LINE L1 -2 6220 4788 297 167 0 6 chr12 6143902 6143960 -138138529 - L1MA10 LINE L1 -1579 4455 4400 1142 89 0 13 chr12 6143963 6144120 -138138369 - MER4C LTR ERV1 0 465 311 2482 77 28 25 chr12 6144120 6144473 -138138016 - MER4C LTR ERV1 -111 354 1 5980 229 61 48 chr12 6144473 6146290 -138136199 - L1MA10 LINE L1 -1636 4398 2606 3454 45 0 0 chr12 6146290 6146742 -138135747 - L1PA5 LINE L1 0 6154 5756 5980 229 61 48 chr12 6146742 6148175 -138134314 - L1MA10 LINE L1 -3428 2606 3 3413 250 116 52 chr12 6148535 6149916 -138132573 + L1ME3A LINE L1 18 1486 -4937 1285 269 35 59 chr12 6149917 6150358 -138132131 + L1ME3A LINE L1 1875 2292 -4830 2394 143 0 15 chr12 6150358 6150700 -138131789 + MER1B DNA MER1_type 1 337 0 1285 269 35 59 chr12 6150700 6151000 -138131489 + L1ME3A LINE L1 2292 2598 -4524 424 262 6 38 chr12 6151380 6151563 -138130926 + MER31-int LTR ERV1 973 1149 -5182 180 0 0 0 chr12 6151996 6152016 -138130473 + (A)n Simple_repeat Simple_repeat 1 20 0 347 196 14 98 chr12 6152193 6152336 -138130153 + LTR57-int LTR ERVL 622 752 -4591 * 917 209 42 58 chr12 6152278 6152818 -138129671 + MER31-int LTR ERV1 834 2028 -2843 * 923 232 21 64 chr12 6152711 6152991 -138129498 + LTR57-int LTR ERVL 1225 1492 -3851 687 202 65 85 chr12 6153077 6153325 -138129164 + MER31-int LTR ERV1 1737 1979 -2957 * 2192 195 68 102 chr12 6153324 6154369 -138128120 + MER31-int LTR ERV1 3455 4463 -1868 396 214 22 0 chr12 6154369 6154458 -138128031 + MER34B LTR ERV1 470 560 -5 1443 232 129 7 chr12 6154467 6154915 -138127574 + L1ME3A LINE L1 3612 4114 -2827 323 171 53 40 chr12 6155119 6155195 -138127294 - MIR SINE MIR -122 140 64 724 266 65 12 chr12 6155247 6155495 -138126994 - MIR SINE MIR 0 262 2 238 219 0 16 chr12 6156027 6156091 -138126398 + GA-rich Low_complexity Low_complexity 2 64 0 642 245 75 75 chr12 6156120 6156373 -138126116 - MER102a DNA MER1_type -4 326 74 269 314 89 32 chr12 6156440 6156564 -138125925 + MIR SINE MIR 4 134 -128 3115 261 60 10 chr12 6156659 6157621 -138124868 + L1ME3A LINE L1 5941 6948 -17 278 298 32 11 chr12 6158448 6158542 -138123947 - MIR SINE MIR -10 252 157 417 272 48 34 chr12 6160769 6160916 -138121573 - MER91A DNA MER1_type -45 151 3 384 286 48 48 chr12 6160928 6161075 -138121414 - MIR SINE MIR -111 151 5 1267 265 170 18 chr12 6161246 6162136 -138120353 + L2 LINE L2 2272 3311 -2 404 309 44 19 chr12 6162139 6162293 -138120196 - MIR SINE MIR -75 133 25 2056 120 45 0 chr12 6162435 6162727 -138119762 + AluSq SINE Alu 1 305 -8 891 241 191 26 chr12 6163859 6164199 -138118290 + LTR33 LTR ERVL 31 426 -95 298 319 44 67 chr12 6164278 6164413 -138118076 - MIR3 SINE MIR -32 176 45 252 237 105 13 chr12 6164420 6164496 -138117993 + MIR SINE MIR 179 261 -1 544 224 26 9 chr12 6164692 6164808 -138117681 - MER91A DNA MER1_type -78 118 1 1413 178 10 40 chr12 6165110 6165413 -138117076 + AluJb SINE Alu 1 294 -18 478 291 166 0 chr12 6165894 6166093 -138116396 - MIR SINE MIR -10 252 21 2204 56 0 0 chr12 6166399 6166665 -138115824 - AluY SINE Alu -12 299 34 189 344 76 8 chr12 6167168 6167299 -138115190 - MIR3 SINE MIR -48 160 21 307 262 97 10 chr12 6168890 6168993 -138113496 + L3b LINE CR1 1268 1379 -204 571 256 70 92 chr12 6169057 6169284 -138113205 - MIR SINE MIR -7 255 34 192 125 0 0 chr12 6169370 6169402 -138113087 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 577 251 29 0 chr12 6169439 6169614 -138112875 + MER104 DNA MER2_type 1 180 0 202 347 40 0 chr12 6169822 6169897 -138112592 + L2 LINE L2 3182 3259 -54 202 239 56 84 chr12 6169990 6170061 -138112428 + L3b LINE CR1 1506 1574 -9 2353 211 42 72 chr12 6170445 6171255 -138111234 + L1MC4 LINE L1 7221 8006 -36 2567 233 46 10 chr12 6172705 6173432 -138109057 - L1MEc LINE L1 -3312 2903 2184 341 269 92 8 chr12 6173457 6173587 -138108902 - L1MEc LINE L1 -6216 180 40 181 311 33 16 chr12 6173594 6173655 -138108834 + MER5A DNA MER1_type 128 189 0 870 266 125 37 chr12 6173888 6174297 -138108192 - L3 LINE CR1 -461 1116 672 275 316 0 0 chr12 6174634 6174713 -138107776 + MIR SINE MIR 58 136 -72 436 338 91 60 chr12 6174951 6175401 -138107088 + L2 LINE L2 2807 3270 -2 330 98 0 0 chr12 6176594 6176645 -138105844 + (CA)n Simple_repeat Simple_repeat 2 52 0 276 231 64 26 chr12 6177166 6177244 -138105245 - MIR3 SINE MIR -7 201 121 210 362 0 0 chr12 6177443 6177501 -138104988 + MIR3 SINE MIR 135 192 -16 341 306 244 10 chr12 6177679 6177872 -138104617 + MIR SINE MIR 3 240 -22 223 341 24 0 chr12 6178233 6178318 -138104171 + L2 LINE L2 2737 2823 -491 696 248 105 19 chr12 6178395 6178605 -138103884 + MIR SINE MIR 35 262 0 317 254 18 5 chr12 6178927 6179020 -138103469 + MLT1I LTR MaLR 72 203 -264 287 210 0 0 chr12 6179301 6179363 -138103126 - MER94 DNA DNA -60 74 13 395 253 0 0 chr12 6179382 6179457 -138103032 + L2 LINE L2 3179 3253 -19 2251 97 7 0 chr12 6179487 6179796 -138102693 - AluSx SINE Alu -1 311 1 500 232 101 7 chr12 6182554 6182692 -138099797 + MIR SINE MIR 32 182 -80 36 82 0 0 chr12 6182870 6182955 -138099534 + AT_rich Low_complexity Low_complexity 1 85 0 367 285 62 41 chr12 6182991 6183164 -138099325 - MIR SINE MIR -61 147 20 709 306 61 66 chr12 6183899 6184291 -138098198 + L3 LINE CR1 1123 1512 -65 182 280 67 73 chr12 6184472 6184622 -138097867 + MIR SINE MIR 4 152 -110 199 250 0 125 chr12 6185464 6185544 -138096945 + L2 LINE L2 3001 3070 -202 473 204 2 18 chr12 6187063 6187516 -138094973 + (CA)n Simple_repeat Simple_repeat 1 445 0 316 292 26 39 chr12 6189601 6189755 -138092734 - MIR3 SINE MIR -35 173 22 3035 247 123 25 chr12 6190806 6192130 -138090359 - L2 LINE L2 0 3313 1854 256 283 38 38 chr12 6194117 6194223 -138088266 + MIR SINE MIR 42 147 -61 289 295 66 25 chr12 6196562 6196684 -138085805 + MIR SINE MIR 20 146 -116 24 0 0 0 chr12 6197726 6197750 -138084739 + AT_rich Low_complexity Low_complexity 1 24 0 816 188 96 14 chr12 6198797 6199015 -138083474 + Charlie1 DNA MER1_type 1 236 -2525 585 220 38 8 chr12 6199002 6199134 -138083355 + Charlie1 DNA MER1_type 2621 2756 -5 * 559 226 8 0 chr12 6202993 6203240 -138079249 + G-rich Low_complexity Low_complexity 1 249 0 705 143 5 53 chr12 6203244 6203433 -138079056 + GA-rich Low_complexity Low_complexity 1 180 0 299 68 0 23 chr12 6203436 6203480 -138079009 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 219 246 0 0 chr12 6203486 6203543 -138078946 + A-rich Low_complexity Low_complexity 1 57 0 * 524 153 16 44 chr12 6203541 6203724 -138078765 + GA-rich Low_complexity Low_complexity 3 180 0 774 153 23 11 chr12 6203745 6203921 -138078568 + GA-rich Low_complexity Low_complexity 3 180 0 401 152 18 36 chr12 6203933 6204045 -138078444 + GA-rich Low_complexity Low_complexity 3 112 0 431 329 7 14 chr12 6204311 6204454 -138078035 - MER5A DNA MER1_type -13 176 35 213 292 34 11 chr12 6204636 6204725 -138077764 + MIR SINE MIR 48 138 -70 509 291 37 32 chr12 6204744 6204933 -138077556 - MIR3 SINE MIR 0 208 19 513 276 65 35 chr12 6205092 6205291 -138077198 + LTR33 LTR ERVL 314 518 -3 1040 255 77 20 chr12 6205325 6205678 -138076811 + L2 LINE L2 2941 3313 0 235 314 116 0 chr12 6205764 6205850 -138076639 + MIR SINE MIR 21 116 -92 313 250 170 0 chr12 6207518 6207618 -138074871 + MIR SINE MIR 34 150 -112 439 348 25 6 chr12 6207753 6207914 -138074575 + L2 LINE L2 3102 3265 -7 460 237 90 0 chr12 6208148 6208274 -138074215 - MIR SINE MIR -62 146 58 250 319 115 13 chr12 6208625 6208782 -138073707 - L2 LINE L2 -926 2388 2216 2702 70 123 5 chr12 6209025 6209385 -138073104 + MLT2A1 LTR ERVL 1 414 -30 478 53 13 13 chr12 6209385 6209460 -138073029 + (TA)n Simple_repeat Simple_repeat 2 76 0 2702 70 123 5 chr12 6209460 6209496 -138072993 + MLT2A1 LTR ERVL 414 444 0 4716 49 9 0 chr12 6209496 6210071 -138072418 + HERVL-A1 LTR ERVL 1 580 -5074 * 29763 63 9 5 chr12 6210063 6213704 -138068785 + HERVL-A1 LTR ERVL 765 4420 -1234 2163 80 27 23 chr12 6213704 6214004 -138068485 - THE1A LTR MaLR 0 355 55 291 265 191 37 chr12 6264573 6264762 -138017727 + MIR SINE MIR 31 248 -14 1963 107 0 0 chr12 6264913 6265184 -138017305 + AluSg SINE Alu 37 307 -3 228 289 0 40 chr12 6266841 6266917 -138015572 + L1MC/D LINE L1 5708 5780 -2028 1770 166 0 0 chr12 6266954 6267256 -138015233 + AluJb SINE Alu 1 302 -10 1263 191 36 13 chr12 6267379 6267682 -138014807 + L1MC3 LINE L1 7473 7782 -3 649 173 48 48 chr12 6268234 6268402 -138014087 - MER53 DNA DNA -19 170 3 496 283 40 80 chr12 6268439 6268518 -138013971 - MIR SINE MIR -44 218 137 2009 143 0 3 chr12 6268518 6268826 -138013663 - AluSx SINE Alu -3 309 3 496 283 40 80 chr12 6268826 6268972 -138013517 - MIR SINE MIR -125 137 2 234 266 31 16 chr12 6269315 6269379 -138013110 + L3b LINE CR1 1503 1567 -16 2179 100 0 3 chr12 6269398 6269697 -138012792 - AluSg SINE Alu -12 298 1 317 260 133 87 chr12 6269769 6269919 -138012570 - MIR SINE MIR -1 261 105 * 989 271 89 39 chr12 6269918 6270379 -138012110 - L2 LINE L2 0 3313 2830 2375 68 0 0 chr12 6270658 6270954 -138011535 - AluY SINE Alu -14 297 2 654 152 0 0 chr12 6270988 6271113 -138011376 + (TGGA)n Simple_repeat Simple_repeat 1 125 0 2145 91 0 31 chr12 6271538 6271857 -138010632 + AluY SINE Alu 1 309 -2 207 329 7 20 chr12 6272549 6272701 -138009788 + (CA)n Simple_repeat Simple_repeat 1 150 0 1143 121 0 0 chr12 6273963 6274263 -138008226 + (CA)n Simple_repeat Simple_repeat 1 300 0 475 252 208 6 chr12 6274833 6274992 -138007497 + MIR SINE MIR 37 227 -35 2313 129 151 0 chr12 6275507 6275911 -138006578 + MER4C LTR ERV1 1 465 0 841 322 140 7 chr12 6276801 6277556 -138004933 + L2 LINE L2 2120 2975 -339 381 282 0 28 chr12 6279431 6279612 -138002877 + CT-rich Low_complexity Low_complexity 3 178 0 376 277 0 43 chr12 6279654 6280124 -138002365 + CT-rich Low_complexity Low_complexity 1 449 0 372 274 0 40 chr12 6280147 6280714 -138001775 + CT-rich Low_complexity Low_complexity 1 544 0 378 293 0 28 chr12 6280755 6280936 -138001553 + CT-rich Low_complexity Low_complexity 3 178 0 313 243 0 62 chr12 6280957 6281101 -138001388 + CT-rich Low_complexity Low_complexity 3 137 0 258 297 17 51 chr12 6281325 6281443 -138001046 - L2 LINE L2 -453 2861 2748 271 273 63 98 chr12 6281744 6282154 -138000335 + L2 LINE L2 2466 2861 -453 331 209 0 92 chr12 6282378 6282574 -137999915 + GA-rich Low_complexity Low_complexity 3 180 0 314 313 0 26 chr12 6282617 6282966 -137999523 + GA-rich Low_complexity Low_complexity 1 339 0 393 214 0 73 chr12 6282987 6283179 -137999310 + GA-rich Low_complexity Low_complexity 3 180 0 340 307 0 26 chr12 6283201 6283550 -137998939 + GA-rich Low_complexity Low_complexity 1 339 0 306 320 0 22 chr12 6283594 6283772 -137998717 + GA-rich Low_complexity Low_complexity 4 177 0 300 316 0 26 chr12 6283793 6284142 -137998347 + GA-rich Low_complexity Low_complexity 1 339 0 312 307 0 28 chr12 6284185 6284364 -137998125 + GA-rich Low_complexity Low_complexity 4 177 0 326 302 0 28 chr12 6284407 6284586 -137997903 + GA-rich Low_complexity Low_complexity 4 177 0 314 311 0 28 chr12 6284607 6284787 -137997702 + GA-rich Low_complexity Low_complexity 3 177 0 312 315 0 26 chr12 6284829 6285252 -137997237 + GA-rich Low_complexity Low_complexity 1 411 0 344 300 0 28 chr12 6285273 6285453 -137997036 + GA-rich Low_complexity Low_complexity 3 177 0 344 286 0 33 chr12 6285495 6285677 -137996812 + GA-rich Low_complexity Low_complexity 3 178 0 350 321 81 32 chr12 6285803 6286024 -137996465 + L2 LINE L2 2630 2861 -453 312 297 0 38 chr12 6286248 6286762 -137995727 + GA-rich Low_complexity Low_complexity 1 494 0 354 291 0 28 chr12 6286805 6286984 -137995505 + GA-rich Low_complexity Low_complexity 4 177 0 353 298 0 28 chr12 6287005 6287186 -137995303 + GA-rich Low_complexity Low_complexity 3 178 0 180 320 72 31 chr12 6287885 6287982 -137994507 - L2 LINE L2 -568 2746 2646 228 241 0 0 chr12 6287985 6288043 -137994446 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 198 254 18 91 chr12 6288234 6288344 -137994145 + L2 LINE L2 2901 3002 -270 970 185 16 22 chr12 6288561 6288745 -137993744 - MIR SINE MIR 0 262 80 309 306 0 0 chr12 6289688 6289760 -137992729 + L2 LINE L2 3168 3239 -33 554 214 29 0 chr12 6290230 6290333 -137992156 - MER5B DNA MER1_type -1 177 72 180 200 29 0 chr12 6290329 6290364 -137992125 + MER5B DNA MER1_type 142 177 -1 * 1931 172 26 48 chr12 6290458 6290789 -137991700 - L1M LINE L1 -743 5403 5120 1369 212 38 46 chr12 6290789 6291157 -137991332 + MLT1A1 LTR MaLR 1 365 0 1931 172 26 48 chr12 6291157 6291359 -137991130 - L1M LINE L1 -1026 5120 4915 21 57 0 0 chr12 6291374 6291409 -137991080 + AT_rich Low_complexity Low_complexity 1 35 0 2758 172 13 2 chr12 6291455 6292022 -137990467 - L1M2 LINE L1 -559 5753 5174 353 364 59 62 chr12 6292297 6292940 -137989549 - L1MEc LINE L1 -5700 696 56 376 170 0 0 chr12 6292944 6293011 -137989478 - Alu SINE Alu -250 53 1 2210 106 0 13 chr12 6293027 6293330 -137989159 + AluSq SINE Alu 1 299 -14 25 0 0 0 chr12 6293398 6293423 -137989066 + AT_rich Low_complexity Low_complexity 1 25 0 2203 89 17 0 chr12 6293425 6293727 -137988762 + AluSc SINE Alu 1 307 -2 196 298 106 21 chr12 6293871 6293965 -137988524 - L2 LINE L2 -12 3260 3159 862 208 48 34 chr12 6294182 6294389 -137988100 - MLT1J2 LTR MaLR -240 210 1 375 23 0 0 chr12 6294554 6294598 -137987891 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 3872 179 34 1 chr12 6295047 6295778 -137986711 + L1MB7 LINE L1 5427 6181 -3 1117 246 46 94 chr12 6295778 6296545 -137985944 + L1MDa LINE L1 1310 2039 -4501 21 0 0 0 chr12 6296813 6296834 -137985655 + AT_rich Low_complexity Low_complexity 1 21 0 508 269 82 39 chr12 6297070 6297278 -137985211 + L2 LINE L2 2842 3058 -255 5293 101 22 14 chr12 6297299 6297750 -137984739 + L1PB2 LINE L1 5337 5800 -351 363 73 0 0 chr12 6297750 6297805 -137984684 + (TG)n Simple_repeat Simple_repeat 2 56 0 5293 101 22 14 chr12 6297805 6298154 -137984335 + L1PB2 LINE L1 5800 6144 -7 183 42 0 0 chr12 6299460 6299484 -137983005 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr12 6299722 6299746 -137982743 + GC_rich Low_complexity Low_complexity 1 24 0 208 272 9 35 chr12 6299788 6299902 -137982587 + (CCCCG)n Simple_repeat Simple_repeat 5 115 0 534 309 99 4 chr12 6300832 6301065 -137981424 - MIR SINE MIR -6 256 2 520 224 40 59 chr12 6302030 6302182 -137980307 + MIR3 SINE MIR 36 184 -24 339 300 114 0 chr12 6302694 6302834 -137979655 - MIR SINE MIR -75 187 32 2306 84 0 0 chr12 6307437 6307733 -137974756 + AluSc SINE Alu 1 296 -13 954 302 102 26 chr12 6308319 6308779 -137973710 + L2 LINE L2 2255 2749 -565 851 351 38 7 chr12 6308807 6309228 -137973261 + L1ME LINE L1 378 811 -5605 672 291 37 75 chr12 6309445 6309711 -137972778 + L1ME LINE L1 871 1052 -5364 3757 38 9 0 chr12 6309711 6310160 -137972329 - L1PA3 LINE L1 0 6155 5703 672 291 37 75 chr12 6310160 6310494 -137971995 + L1ME LINE L1 1052 1397 -5019 2948 123 136 6 chr12 6310499 6311005 -137971484 + Tigger3b DNA MER2_type 1 572 -659 865 147 14 0 chr12 6311006 6311149 -137971340 + FRAM SINE Alu 20 164 -12 3990 118 39 8 chr12 6311151 6311798 -137970691 + Tigger3b DNA MER2_type 565 1231 0 1320 260 150 32 chr12 6311798 6312898 -137969591 + L1MC/D LINE L1 1247 2673 -3934 1657 181 0 7 chr12 6312905 6313204 -137969285 + AluJb SINE Alu 11 307 -5 3705 242 67 51 chr12 6313390 6313424 -137969065 + L1MC/D LINE L1 2641 2673 -3753 1766 161 30 3 chr12 6313424 6313723 -137968766 + AluJo SINE Alu 1 307 -5 3705 242 67 51 chr12 6313723 6314540 -137967949 + L1MC/D LINE L1 2673 3475 -2951 187 53 26 26 chr12 6314540 6314578 -137967911 + (TATAA)n Simple_repeat Simple_repeat 2 39 0 3705 242 67 51 chr12 6314578 6315340 -137967149 + L1MC/D LINE L1 3475 4286 -2140 3668 116 6 4 chr12 6315342 6315852 -137966637 + MER1A DNA MER1_type 19 529 0 4048 203 79 54 chr12 6315858 6316313 -137966176 + L1MC/D LINE L1 4296 4738 -1704 1209 206 66 71 chr12 6316313 6316678 -137965811 + MLT1A1 LTR MaLR 1 363 -2 4048 203 79 54 chr12 6316678 6317026 -137965463 + L1MC/D LINE L1 4738 5076 -1366 2376 86 0 26 chr12 6317026 6317339 -137965150 - AluSc SINE Alu -4 305 1 4048 203 79 54 chr12 6317339 6318028 -137964461 + L1MC/D LINE L1 5076 5821 -621 518 158 0 11 chr12 6318154 6318249 -137964240 - AluJ/FRAM SINE Alu 0 312 219 2316 70 0 33 chr12 6318416 6318710 -137963779 + AluY SINE Alu 1 285 -22 666 37 0 0 chr12 6318710 6318791 -137963698 + (CATA)n Simple_repeat Simple_repeat 2 82 0 215 61 30 0 chr12 6320760 6320793 -137961696 + (CA)n Simple_repeat Simple_repeat 2 35 0 302 262 12 0 chr12 6321514 6321598 -137960891 + L1MC/D LINE L1 6003 6087 -2001 211 214 0 0 chr12 6321599 6321641 -137960848 + L2 LINE L2 3266 3307 -6 1889 125 4 0 chr12 6323004 6323260 -137959229 + AluSx SINE Alu 1 257 -55 210 71 0 0 chr12 6323302 6323330 -137959159 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 816 71 0 0 chr12 6330422 6330520 -137951969 + AluY SINE Alu 198 295 -16 244 343 29 19 chr12 6330788 6330893 -137951596 - L2 LINE L2 -5 3308 3203 245 317 8 42 chr12 6331456 6331576 -137950913 - L3 LINE CR1 -246 1331 1216 1428 272 67 58 chr12 6331628 6332079 -137950410 + L1MC5 LINE L1 5548 5993 -1992 1603 195 3 3 chr12 6332079 6332361 -137950128 + AluJb SINE Alu 1 282 -30 223 71 48 0 chr12 6332365 6332407 -137950082 + (TA)n Simple_repeat Simple_repeat 1 44 0 1428 272 67 58 chr12 6332407 6332758 -137949731 + L1MC5 LINE L1 5995 6341 -1644 1988 120 4 7 chr12 6332758 6333034 -137949455 - AluSx SINE Alu -16 296 22 1428 272 67 58 chr12 6333034 6333870 -137948619 + L1MC5 LINE L1 6341 7232 -753 2124 108 28 0 chr12 6333961 6334248 -137948241 + AluSc SINE Alu 1 295 -14 2484 73 0 19 chr12 6334251 6334568 -137947921 + AluY SINE Alu 1 311 0 680 135 0 8 chr12 6334585 6334711 -137947778 + (GGGA)n Simple_repeat Simple_repeat 2 126 0 529 286 38 19 chr12 6334794 6335004 -137947485 + L1MC5 LINE L1 7313 7526 -435 220 234 0 117 chr12 6335536 6335613 -137946876 + L2 LINE L2 3205 3272 0 189 107 0 0 chr12 6335613 6335641 -137946848 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 747 174 0 0 chr12 6335686 6335801 -137946688 + FLAM_A SINE Alu 1 115 -18 274 304 52 37 chr12 6335850 6335985 -137946504 + L2 LINE L2 3177 3313 0 246 156 0 0 chr12 6336114 6336159 -137946330 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 746 95 17 34 chr12 6337840 6338019 -137944470 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 756 87 43 36 chr12 6338060 6338515 -137943974 + (TAGA)n Simple_repeat Simple_repeat 1 458 0 211 321 175 7 chr12 6338565 6338702 -137943787 + MIR SINE MIR 88 247 -15 264 277 0 0 chr12 6338704 6338769 -137943720 + MIR3 SINE MIR 133 197 -11 402 348 153 22 chr12 6338895 6339340 -137943149 - L3 LINE CR1 -835 742 240 192 286 66 11 chr12 6340585 6340676 -137941813 - MIR3 SINE MIR -32 176 81 316 182 27 0 chr12 6340725 6340803 -137941686 + MIR SINE MIR 104 183 -79 374 249 145 42 chr12 6341156 6341349 -137941140 - MIR SINE MIR -1 261 49 2156 136 3 3 chr12 6341386 6341694 -137940795 - AluSx SINE Alu -4 308 1 521 230 140 11 chr12 6341753 6341931 -137940558 - MIR SINE MIR -30 232 32 1531 229 46 15 chr12 6342072 6342465 -137940024 + L1ME1 LINE L1 5757 6161 -5 24 0 0 0 chr12 6343119 6343143 -137939346 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr12 6345334 6345359 -137937130 + (A)n Simple_repeat Simple_repeat 1 25 0 245 273 66 58 chr12 6345424 6345545 -137936944 + MIR SINE MIR 11 132 -130 417 39 0 0 chr12 6345617 6345668 -137936821 + (CA)n Simple_repeat Simple_repeat 1 51 0 499 269 90 0 chr12 6345668 6345813 -137936676 - MER103 DNA DNA -1 165 8 186 171 0 0 chr12 6345988 6346029 -137936460 + (TAA)n Simple_repeat Simple_repeat 3 43 0 1110 199 75 72 chr12 6346566 6346912 -137935577 + MLT1J LTR MaLR 4 350 -161 366 235 121 20 chr12 6347398 6347547 -137934942 - MIR3 SINE MIR -15 193 30 255 218 0 0 chr12 6348064 6348119 -137934370 + L1MC4 LINE L1 6648 6702 -1340 * 277 189 14 27 chr12 6348089 6348163 -137934326 - L1MC4 LINE L1 -1340 6702 6630 229 237 51 0 chr12 6348206 6348265 -137934224 - MIR SINE MIR -109 153 92 1437 64 16 0 chr12 6349431 6349618 -137932871 - MER30B DNA MER1_type 0 190 1 312 253 0 33 chr12 6350776 6350867 -137931622 - MIR3 SINE MIR -23 185 98 198 0 0 0 chr12 6351198 6351220 -137931269 + (A)n Simple_repeat Simple_repeat 1 22 0 363 325 52 19 chr12 6351900 6352112 -137930377 + MIR SINE MIR 30 248 -14 1984 68 0 0 chr12 6352664 6352898 -137929591 + AluY SINE Alu 1 234 -77 198 0 0 0 chr12 6352913 6352935 -137929554 + (A)n Simple_repeat Simple_repeat 1 22 0 252 0 0 0 chr12 6352935 6352963 -137929526 + (TA)n Simple_repeat Simple_repeat 2 29 0 2207 105 16 7 chr12 6353146 6353451 -137929038 - AluSg SINE Alu -2 308 1 357 24 0 0 chr12 6353892 6353934 -137928555 + (CA)n Simple_repeat Simple_repeat 2 43 0 970 300 98 42 chr12 6354365 6354958 -137927531 + HAL1b LINE L1 5 662 -686 2485 45 7 16 chr12 6354958 6355266 -137927223 + AluY SINE Alu 3 307 -4 970 300 98 42 chr12 6355266 6355533 -137926956 + HAL1b LINE L1 662 913 -435 23 68 0 0 chr12 6355657 6355701 -137926788 + AT_rich Low_complexity Low_complexity 1 44 0 1035 301 119 54 chr12 6355723 6356827 -137925662 + L1MC4a LINE L1 2139 3313 -2833 283 188 16 0 chr12 6356924 6356988 -137925501 + L1P LINE L1 3343 3407 -2739 413 295 14 58 chr12 6357116 6357323 -137925166 + L1MC4a LINE L1 3507 3704 -2442 607 110 0 0 chr12 6357339 6357421 -137925068 + L1M4c LINE L1 29 110 -6274 * 1046 159 10 0 chr12 6357420 6357615 -137924874 + L1M4c LINE L1 860 1056 -5328 * 2125 106 14 35 chr12 6357603 6357970 -137924519 + L1M4c LINE L1 1924 2282 -4102 1802 157 12 26 chr12 6357972 6358232 -137924257 + L1MB3 LINE L1 5842 6097 -86 2088 56 0 8 chr12 6358232 6358483 -137924006 - AluY SINE Alu 0 311 63 1802 157 12 26 chr12 6358483 6358566 -137923923 + L1MB3 LINE L1 6097 6180 -3 725 253 125 112 chr12 6358577 6358876 -137923613 + L1MC4a LINE L1 3692 3986 -2160 240 111 0 0 chr12 6358876 6358912 -137923577 + (TG)n Simple_repeat Simple_repeat 1 36 0 725 253 125 112 chr12 6358912 6359752 -137922737 + L1MC4a LINE L1 3986 4846 -1300 8352 229 43 27 chr12 6359914 6360932 -137921557 + L1MB1 LINE L1 2596 3596 -3969 2102 103 0 14 chr12 6360932 6361213 -137921276 + AluSc SINE Alu 1 277 -32 191 35 0 35 chr12 6361213 6361242 -137921247 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 8352 229 43 27 chr12 6361242 6363334 -137919155 + L1MB1 LINE L1 3595 5784 -1781 5273 160 19 17 chr12 6363316 6363865 -137918624 + L1MB1 LINE L1 6350 6896 -691 * 360 0 0 0 chr12 6363865 6363905 -137918584 + (CA)n Simple_repeat Simple_repeat 2 41 0 5273 160 19 17 chr12 6363905 6364579 -137917910 + L1MB1 LINE L1 6896 7581 -6 1715 220 58 76 chr12 6364584 6365174 -137917315 + L1MC4a LINE L1 5310 5888 -1920 180 0 0 0 chr12 6367123 6367143 -137915346 + (TG)n Simple_repeat Simple_repeat 2 21 0 2618 57 0 0 chr12 6367144 6367440 -137915049 - AluY SINE Alu -15 296 1 1666 274 144 11 chr12 6368223 6369267 -137913222 - L2 LINE L2 -5 3308 2128 226 254 34 0 chr12 6369277 6369336 -137913153 - MIR SINE MIR -63 145 85 217 384 120 0 chr12 6369600 6369725 -137912764 - L2 LINE L2 0 3272 3133 186 43 0 0 chr12 6369730 6369753 -137912736 + (CAATA)n Simple_repeat Simple_repeat 2 24 0 407 253 96 7 chr12 6370796 6370942 -137911547 - MIR3 SINE MIR -23 185 27 438 239 32 134 chr12 6372063 6372310 -137910179 - MIR SINE MIR -14 248 27 181 305 98 0 chr12 6372640 6372722 -137909767 - MIR SINE MIR -73 135 46 247 254 16 0 chr12 6374846 6374909 -137907580 - L2 LINE L2 0 3272 3209 219 148 0 49 chr12 6376164 6376225 -137906264 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 491 200 9 9 chr12 6376784 6376894 -137905595 - MER3 DNA MER1_type 0 209 100 920 150 0 0 chr12 6377528 6377661 -137904828 - FLAM_C SINE Alu -10 133 1 2327 117 3 0 chr12 6379181 6379489 -137903000 + AluSx SINE Alu 1 309 -3 202 273 162 0 chr12 6380691 6380790 -137901699 - MIR SINE MIR -117 145 31 1410 159 19 0 chr12 6381095 6381352 -137901137 + L1MA5 LINE L1 6037 6298 -2 238 310 95 57 chr12 6381373 6381531 -137900958 + L3 LINE CR1 1190 1353 -224 417 264 72 20 chr12 6381545 6381857 -137900632 + L2 LINE L2 2758 3082 -231 1484 183 83 40 chr12 6381905 6382277 -137900212 + MLT1D LTR MaLR 118 505 0 339 25 0 0 chr12 6382283 6382323 -137900166 + (CA)n Simple_repeat Simple_repeat 2 41 0 369 200 62 0 chr12 6382339 6382419 -137900070 + L2 LINE L2 3229 3313 0 6411 70 10 6 chr12 6382823 6383717 -137898772 + L1P LINE L1 1611 2508 -3638 390 308 77 18 chr12 6384956 6385125 -137897364 + MER5A DNA MER1_type 10 188 -1 2113 128 0 10 chr12 6385185 6385481 -137897008 + AluSx SINE Alu 1 293 -19 949 61 0 0 chr12 6386680 6386795 -137895694 + AluSc SINE Alu 194 308 -1 2585 59 3 0 chr12 6386797 6387104 -137895385 + AluY SINE Alu 1 308 -3 220 271 102 0 chr12 6387104 6387163 -137895326 + MIR SINE MIR 51 115 -147 615 231 0 0 chr12 6387163 6387470 -137895019 + (CA)n Simple_repeat Simple_repeat 1 307 0 293 182 18 0 chr12 6387474 6387529 -137894960 + (CATA)n Simple_repeat Simple_repeat 1 56 0 461 275 48 16 chr12 6388674 6388863 -137893626 + MER91A DNA MER1_type 1 195 -1 1653 100 6 108 chr12 6390230 6390618 -137891871 + Tigger4(Zombi) DNA MER2_type 1 2731 0 236 221 19 19 chr12 6390660 6390743 -137891746 - MIR SINE MIR -60 148 69 762 258 181 25 chr12 6391200 6391720 -137890769 + L1ME4a LINE L1 5519 6119 -2 200 267 124 19 chr12 6394412 6394573 -137887916 + MIR3 SINE MIR 24 201 -7 237 231 0 46 chr12 6394706 6394771 -137887718 - MIR3 SINE MIR -15 193 132 315 250 71 27 chr12 6394980 6395092 -137887397 - MIR SINE MIR -122 140 24 457 188 80 212 chr12 6395392 6395587 -137886902 + MER5C DNA MER1_type 1 220 -104 2261 114 0 16 chr12 6395587 6395895 -137886594 + AluSx SINE Alu 1 303 -9 2505 55 3 0 chr12 6395895 6396186 -137886303 - AluY SINE Alu -19 292 1 457 188 80 212 chr12 6396186 6396314 -137886175 + MER5C DNA MER1_type 218 282 -42 228 300 175 8 chr12 6398173 6398293 -137884196 - MIR3 SINE MIR -8 200 61 276 292 5 108 chr12 6399397 6399592 -137882897 + L2 LINE L2 3074 3248 -65 2345 87 14 3 chr12 6400380 6400669 -137881820 + AluSx SINE Alu 1 292 -20 1458 294 101 20 chr12 6401272 6402077 -137880412 + L2 LINE L2 1765 2634 -680 314 353 129 7 chr12 6402107 6402596 -137879893 - L1ME3A LINE L1 -222 5948 5397 2282 109 0 0 chr12 6402602 6402905 -137879584 - AluSc SINE Alu -6 303 1 2388 98 0 0 chr12 6402907 6403202 -137879287 - AluSx SINE Alu -17 295 1 258 252 122 41 chr12 6404031 6404154 -137878335 + MIR SINE MIR 50 182 -80 256 366 142 19 chr12 6404254 6404929 -137877560 + L2 LINE L2 2004 2761 -553 2361 81 17 0 chr12 6405117 6405412 -137877077 + AluSq SINE Alu 1 300 -13 734 257 44 24 chr12 6405413 6405709 -137876780 + L1MC5 LINE L1 7616 7917 -44 2293 82 58 0 chr12 6405719 6406013 -137876476 - AluY SINE Alu 0 311 1 230 330 139 9 chr12 6406033 6406069 -137876420 + L2 LINE L2 3140 3170 -102 1548 199 3 11 chr12 6406069 6406351 -137876138 - AluJo SINE Alu -32 280 1 230 330 139 9 chr12 6406351 6406429 -137876060 + L2 LINE L2 3170 3269 -3 490 311 60 0 chr12 6406801 6406952 -137875537 + MIR3 SINE MIR 35 194 -14 556 148 20 0 chr12 6407319 6407420 -137875069 - L1MD1 LINE L1 0 6242 6140 254 318 19 28 chr12 6407772 6407879 -137874610 - MIR SINE MIR -152 110 5 482 224 239 40 chr12 6408032 6408233 -137874256 + MIR SINE MIR 3 243 -19 255 376 55 0 chr12 6408985 6409094 -137873395 - L2 LINE L2 -9 3263 3149 279 223 96 11 chr12 6409526 6409620 -137872869 - L3b LINE CR1 -196 1387 1286 238 276 0 120 chr12 6409777 6409934 -137872555 - MIR SINE MIR -77 131 22 369 0 0 0 chr12 6410201 6410242 -137872247 + (CA)n Simple_repeat Simple_repeat 2 42 0 858 153 0 0 chr12 6410242 6410360 -137872129 - FRAM SINE Alu -36 140 23 1349 154 45 12 chr12 6411755 6411924 -137870565 - AluJo SINE Alu -12 300 119 423 0 0 0 chr12 6411924 6411971 -137870518 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1349 154 45 12 chr12 6411971 6412047 -137870442 - AluJo SINE Alu -193 119 47 370 219 142 52 chr12 6412726 6412881 -137869608 - MIR3 SINE MIR -31 177 9 907 221 55 48 chr12 6413619 6413866 -137868623 + L2 LINE L2 3022 3273 -40 1902 149 70 6 chr12 6413866 6414209 -137868280 - MLT1A1 LTR MaLR 0 365 1 907 221 55 48 chr12 6414209 6414251 -137868238 + L2 LINE L2 3273 3313 0 2331 121 0 0 chr12 6415362 6415669 -137866820 + AluSx SINE Alu 1 307 -5 373 288 49 43 chr12 6415730 6415893 -137866596 + MIR3 SINE MIR 36 199 -9 2428 184 27 16 chr12 6416131 6416647 -137865842 + Charlie1b DNA MER1_type 1 522 -1 233 282 0 42 chr12 6416794 6416865 -137865624 + MIR SINE MIR 109 176 -86 224 33 0 0 chr12 6418974 6419004 -137863485 - MER91B DNA MER1_type -126 64 35 284 263 237 13 chr12 6419884 6420040 -137862449 - MIR3 SINE MIR -3 205 15 2447 82 0 7 chr12 6422294 6422599 -137859890 + AluSx SINE Alu 1 303 -9 1858 133 13 66 chr12 6422915 6423232 -137859257 - AluSx SINE Alu -12 300 1 1905 155 16 10 chr12 6423244 6423276 -137859213 - AluJb SINE Alu 0 312 282 372 43 0 0 chr12 6423276 6423322 -137859167 + (TG)n Simple_repeat Simple_repeat 1 46 0 1905 155 16 10 chr12 6423322 6423598 -137858891 - AluJb SINE Alu -30 282 2 501 247 126 37 chr12 6423601 6423791 -137858698 - MIR SINE MIR -38 224 18 609 256 150 6 chr12 6424896 6425076 -137857413 + MIR SINE MIR 35 240 -22 2335 108 0 0 chr12 6427314 6427610 -137854879 - AluSx SINE Alu -16 296 1 207 0 0 0 chr12 6428931 6428954 -137853535 + (A)n Simple_repeat Simple_repeat 1 23 0 273 226 94 75 chr12 6430439 6430545 -137851944 - MER5B DNA MER1_type -40 138 31 528 239 52 7 chr12 6430766 6430921 -137851568 + MER104 DNA Tc2 1 162 -18 1974 131 0 18 chr12 6431485 6431767 -137850722 + AluSx SINE Alu 15 291 -21 261 258 0 15 chr12 6431957 6432023 -137850466 + MIR SINE MIR 46 110 -152 210 37 0 0 chr12 6432484 6432511 -137849978 + (CAT)n Simple_repeat Simple_repeat 2 28 0 2465 70 0 13 chr12 6433768 6434069 -137848420 + AluY SINE Alu 1 297 -14 321 297 87 82 chr12 6434457 6434676 -137847813 + L2 LINE L2 2965 3184 -88 2150 108 0 0 chr12 6435778 6436081 -137846408 - AluSc SINE Alu 0 303 1 2090 184 26 38 chr12 6436086 6436417 -137846072 + Charlie1b DNA MER1_type 1 325 -2436 2427 79 0 0 chr12 6436417 6436708 -137845781 - AluSg SINE Alu -19 291 1 2090 184 26 38 chr12 6436708 6436904 -137845585 + Charlie1b DNA MER1_type 325 522 -1 2131 131 80 5 chr12 6436912 6437286 -137845203 + MER57A LTR ERV1 2 403 0 1247 167 41 54 chr12 6437460 6437754 -137844735 - AluSq SINE Alu -20 293 4 1764 148 32 4 chr12 6437754 6438032 -137844457 + AluSx SINE Alu 21 306 -6 199 257 7 140 chr12 6438032 6438083 -137844406 + MIR SINE MIR 100 156 -106 1388 241 82 33 chr12 6438083 6438569 -137843920 + MLT1J LTR MaLR 2 511 0 199 257 7 140 chr12 6438569 6438653 -137843836 + MIR SINE MIR 156 217 -45 1568 56 0 80 chr12 6440103 6440353 -137842136 + L1PA8 LINE L1 5939 6168 -4 184 343 20 10 chr12 6440572 6440674 -137841815 - MIR SINE MIR -72 136 34 2565 42 3 23 chr12 6441798 6442107 -137840382 - AluY SINE Alu -8 303 1 247 365 0 0 chr12 6442162 6442247 -137840242 + L3 LINE CR1 1491 1575 -2 298 264 46 0 chr12 6442553 6442640 -137839849 + MER91B DNA MER1_type 56 146 -44 2483 64 0 3 chr12 6442640 6442936 -137839553 + AluY SINE Alu 1 295 -16 251 228 35 0 chr12 6442950 6443007 -137839482 + MER91B DNA MER1_type 130 188 -2 2594 70 0 0 chr12 6444399 6444700 -137837789 - AluY SINE Alu -10 301 1 378 42 0 0 chr12 6445046 6445094 -137837395 + (TCC)n Simple_repeat Simple_repeat 2 49 0 376 297 116 0 chr12 6445125 6445280 -137837209 - MIR SINE MIR -41 221 49 1104 157 0 0 chr12 6445983 6446155 -137836334 - FRAM SINE Alu -8 168 1 319 210 96 0 chr12 6446266 6446373 -137836116 + MIR SINE MIR 13 133 -75 1190 137 21 0 chr12 6446570 6446760 -137835729 + MER72 LTR ERV1 3 196 -526 936 206 12 0 chr12 6446788 6446958 -137835531 - AluSg/x SINE Alu -14 298 127 217 277 0 15 chr12 6446964 6447029 -137835460 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 495 0 0 0 chr12 6447062 6447117 -137835372 + (TG)n Simple_repeat Simple_repeat 1 55 0 2094 204 19 16 chr12 6447132 6447564 -137834925 + MER49 LTR ERV1 491 923 0 457 249 78 48 chr12 6447657 6448003 -137834486 + LTR16A LTR ERVL 13 420 -30 727 263 171 0 chr12 6448466 6448717 -137833772 + MLT1D LTR MaLR 207 500 -5 874 228 53 103 chr12 6448980 6449153 -137833336 + MSTD LTR MaLR 1 181 -215 1563 175 0 44 chr12 6449153 6449450 -137833039 - AluJb SINE Alu -9 303 20 874 228 53 103 chr12 6449450 6449693 -137832796 + MSTD LTR MaLR 181 396 0 1579 171 96 3 chr12 6450121 6450414 -137832075 - 7SLRNA srpRNA srpRNA 0 320 1 552 30 0 0 chr12 6450538 6450604 -137831885 + (TGGA)n Simple_repeat Simple_repeat 2 67 0 184 368 24 16 chr12 6450656 6450781 -137831708 + L2 LINE L2 2915 3040 -232 1133 200 161 82 chr12 6451412 6451599 -137830890 + MLT1D LTR MaLR 3 174 -331 2104 104 4 7 chr12 6451599 6451877 -137830612 + AluSc SINE Alu 1 277 -32 269 45 0 45 chr12 6451878 6451922 -137830567 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 1133 200 161 82 chr12 6451922 6452198 -137830291 + MLT1D LTR MaLR 173 505 0 323 221 35 47 chr12 6452397 6452483 -137830006 + MIR3 SINE MIR 113 197 -11 260 203 0 17 chr12 6452816 6452875 -137829614 + L1MEd LINE L1 2 59 -6060 2305 87 13 16 chr12 6452940 6453251 -137829238 + AluY SINE Alu 1 310 -1 621 233 21 83 chr12 6453354 6453481 -137829008 + L1MEd LINE L1 284 417 -5702 2194 132 3 0 chr12 6453481 6453785 -137828704 + AluSx SINE Alu 1 305 -7 621 233 21 83 chr12 6453785 6454026 -137828463 + L1MEd LINE L1 417 671 -5448 7424 26 1 0 chr12 6454026 6455348 -137827141 + L1PA3 LINE L1 4823 6154 -1 621 233 21 83 chr12 6455348 6455650 -137826839 + L1MEd LINE L1 671 1029 -5090 924 192 0 0 chr12 6455672 6455823 -137826666 + MER63A DNA MER1_type 41 191 -19 2285 104 3 3 chr12 6455938 6456246 -137826243 + AluSg SINE Alu 1 308 -2 327 71 0 0 chr12 6456336 6456378 -137826111 + Alu SINE Alu 1 42 -260 2142 123 7 0 chr12 6456603 6456896 -137825593 + AluSx SINE Alu 1 295 -17 2403 82 7 0 chr12 6456898 6457204 -137825285 + AluY SINE Alu 1 308 -3 1610 135 14 0 chr12 6457207 6457489 -137825000 + L1 LINE L1 4516 4801 -1345 2389 70 3 3 chr12 6457489 6457776 -137824713 + AluY SINE Alu 1 287 -24 240 200 0 0 chr12 6457776 6457826 -137824663 + (TA)n Simple_repeat Simple_repeat 1 50 0 229 333 0 0 chr12 6457867 6457957 -137824532 + L1MC4 LINE L1 6614 6703 -1339 189 0 0 0 chr12 6457989 6458010 -137824479 + (CA)n Simple_repeat Simple_repeat 2 22 0 4624 162 24 29 chr12 6458010 6458850 -137823639 + L1PB4 LINE L1 4780 5620 -536 2266 86 0 36 chr12 6458850 6459154 -137823335 + AluSg SINE Alu 2 294 -16 4624 162 24 29 chr12 6459154 6459680 -137822809 + L1PB4 LINE L1 5620 6147 -9 2199 107 3 27 chr12 6459680 6459979 -137822510 - AluSx SINE Alu -20 292 1 407 217 0 0 chr12 6459979 6460004 -137822485 + L1MA4A LINE L1 6279 6303 0 2794 136 8 104 chr12 6460133 6460198 -137822291 + L1MB3 LINE L1 5602 5672 -511 2289 92 0 26 chr12 6460198 6460503 -137821986 + AluSc SINE Alu 1 297 -12 2794 136 8 104 chr12 6460503 6461035 -137821454 + L1MB3 LINE L1 5672 6135 -48 2390 94 0 3 chr12 6461035 6461343 -137821146 + AluSq SINE Alu 1 307 -6 2794 136 8 104 chr12 6461343 6461386 -137821103 + L1MB3 LINE L1 6135 6181 -2 1883 210 58 20 chr12 6461399 6461884 -137820605 + L1ME1 LINE L1 5676 6334 0 356 280 123 74 chr12 6461885 6462114 -137820375 + L1M4 LINE L1 2204 2420 -3726 2383 80 0 0 chr12 6462114 6462401 -137820088 - AluY SINE Alu -24 287 1 356 280 123 74 chr12 6462401 6462455 -137820034 + L1M4 LINE L1 2420 2470 -3676 2241 136 0 0 chr12 6462455 6462765 -137819724 + AluSx SINE Alu 1 310 -2 356 280 123 74 chr12 6462765 6462778 -137819711 + L1M4 LINE L1 2470 2481 -3665 297 0 0 0 chr12 6462778 6462811 -137819678 + (CA)n Simple_repeat Simple_repeat 2 34 0 356 280 123 74 chr12 6462811 6463143 -137819346 + L1M4 LINE L1 2481 2877 -3269 2543 67 0 0 chr12 6463143 6463443 -137819046 + AluY SINE Alu 1 300 -11 356 280 123 74 chr12 6463443 6463543 -137818946 + L1M4 LINE L1 2877 2971 -3175 594 235 35 0 chr12 6463546 6463661 -137818828 + FLAM_A SINE Alu 1 119 -14 310 251 35 0 chr12 6463678 6463773 -137818716 - L1MCa LINE L1 -1349 6973 1995 279 284 0 11 chr12 6463775 6463864 -137818625 + L1M4 LINE L1 2951 3038 -3108 2408 88 0 0 chr12 6464097 6464393 -137818096 - AluY SINE Alu -15 296 1 632 260 112 0 chr12 6465130 6465299 -137817190 + MIR3 SINE MIR 4 191 -17 180 111 0 0 chr12 6465807 6465834 -137816655 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1164 231 0 9 chr12 6465834 6466059 -137816430 - AluJb SINE Alu -30 282 60 2434 82 0 25 chr12 6466112 6466430 -137816059 + AluY SINE Alu 1 310 -1 221 304 25 13 chr12 6466461 6466540 -137815949 + MER5A DNA MER1_type 38 117 -72 439 69 28 0 chr12 6467252 6467324 -137815165 + (CA)n Simple_repeat Simple_repeat 1 74 0 2531 51 10 0 chr12 6467741 6468036 -137814453 - AluY SINE Alu -12 299 2 250 222 0 37 chr12 6469045 6469099 -137813390 - MIR SINE MIR -159 103 52 1844 171 17 7 chr12 6469484 6469782 -137812707 - AluJo SINE Alu -11 301 1 545 282 141 0 chr12 6469861 6470088 -137812401 + MER112 DNA MER1_type 2 260 0 198 212 0 0 chr12 6470093 6470126 -137812363 - MIR SINE MIR -62 146 114 816 186 129 0 chr12 6470134 6470328 -137812161 - MER20 DNA MER1_type 0 219 1 225 291 46 80 chr12 6471996 6472020 -137810469 - MIR3 SINE MIR -62 146 123 1942 64 4 32 chr12 6472020 6472271 -137810218 + AluSp SINE Alu 44 287 -26 225 291 46 80 chr12 6472271 6472397 -137810092 - MIR3 SINE MIR -85 123 1 2358 98 7 0 chr12 6472820 6473127 -137809362 - AluSx SINE Alu 0 312 4 575 251 117 6 chr12 6473676 6473839 -137808650 + MER5A DNA MER1_type 9 189 0 2365 80 13 13 chr12 6474007 6474306 -137808183 + AluSx SINE Alu 1 299 -13 633 155 0 0 chr12 6474647 6474750 -137807739 + MER31B LTR ERV1 1 103 -363 2234 88 64 10 chr12 6474750 6475046 -137807443 - AluSx SINE Alu 0 312 1 187 385 13 0 chr12 6475047 6475125 -137807364 + MIR SINE MIR 63 141 -67 629 275 75 33 chr12 6476018 6476092 -137806397 - L1ME4a LINE L1 0 6121 6052 2347 113 0 0 chr12 6476092 6476402 -137806087 + AluSx SINE Alu 1 310 -2 629 275 75 33 chr12 6476402 6476752 -137805737 - L1ME4a LINE L1 -69 6052 5679 389 350 89 17 chr12 6477129 6477309 -137805180 + MIR3 SINE MIR 16 208 0 334 348 58 22 chr12 6478090 6478228 -137804261 + L2 LINE L2 3122 3264 -8 369 0 0 0 chr12 6479744 6479785 -137802704 + (CA)n Simple_repeat Simple_repeat 2 42 0 2468 50 0 0 chr12 6480157 6480465 -137802024 + AluY SINE Alu 1 308 0 554 330 68 16 chr12 6480501 6480868 -137801621 + L1ME3A LINE L1 27 412 -5707 2291 118 0 3 chr12 6480936 6481242 -137801247 - AluSg SINE Alu -5 305 1 252 232 185 40 chr12 6481268 6481419 -137801070 + L1ME3A LINE L1 665 837 -5282 889 165 0 0 chr12 6481428 6481555 -137800934 + FLAM_C SINE Alu 1 127 -16 1896 104 8 0 chr12 6481587 6481837 -137800652 + AluSc SINE Alu 51 302 -7 1709 172 20 30 chr12 6481866 6482169 -137800320 + AluJo SINE Alu 1 300 -12 232 248 109 10 chr12 6482237 6482295 -137800194 + L1ME3A LINE L1 1005 1056 -5063 2159 149 0 0 chr12 6482295 6482604 -137799885 + AluSx SINE Alu 1 309 -3 232 248 109 10 chr12 6482604 6482646 -137799843 + L1ME3A LINE L1 1056 1115 -5004 1011 250 69 12 chr12 6482695 6483015 -137799474 - LTR16C LTR ERVL 0 491 154 189 0 0 0 chr12 6483144 6483165 -137799324 + (T)n Simple_repeat Simple_repeat 1 21 0 1905 147 13 33 chr12 6483243 6483549 -137798940 - AluJb SINE Alu -12 300 1 345 293 101 35 chr12 6483970 6484287 -137798202 + L1ME3A LINE L1 2125 2462 -3667 400 259 47 86 chr12 6484437 6484487 -137798002 + L1ME3A LINE L1 4014 4064 -2065 1523 78 5 15 chr12 6484487 6484692 -137797797 + AluSc SINE Alu 1 203 -106 400 259 47 86 chr12 6484692 6484706 -137797783 + L1ME3A LINE L1 4064 4077 -2052 2505 68 3 3 chr12 6484706 6485015 -137797474 - AluY SINE Alu -2 309 1 400 259 47 86 chr12 6485015 6485181 -137797308 + L1ME3A LINE L1 4077 4236 -1893 490 249 75 30 chr12 6485293 6485317 -137797172 + L1ME3A LINE L1 4391 4412 -1717 2129 114 47 3 chr12 6485317 6485616 -137796873 + AluSx SINE Alu 1 312 0 490 249 75 30 chr12 6485616 6485856 -137796633 + L1ME3A LINE L1 4412 4667 -1462 1246 54 0 7 chr12 6485857 6486006 -137796483 + AluY SINE Alu 154 301 -10 2209 90 7 0 chr12 6486029 6486319 -137796170 + AluSp SINE Alu 1 292 -21 2401 80 13 0 chr12 6486320 6486620 -137795869 + AluY SINE Alu 1 304 -7 1019 119 44 6 chr12 6486714 6486874 -137795615 + AluSx SINE Alu 1 166 -146 8030 124 127 32 chr12 6486874 6488423 -137794066 + pTR5 LTR ERV1 743 2438 0 817 149 0 35 chr12 6488428 6488569 -137793920 + AluSp/q SINE Alu 165 300 -13 550 281 93 24 chr12 6488572 6489073 -137793416 + L1ME3A LINE L1 5369 5939 -214 1803 178 0 13 chr12 6489111 6489409 -137793080 + AluJb SINE Alu 11 304 -8 313 266 53 35 chr12 6489564 6489677 -137792812 + L1MC4 LINE L1 7926 8040 -2 374 253 138 23 chr12 6489709 6489883 -137792606 - L1ME LINE L1 -395 5726 5533 2264 60 42 7 chr12 6489948 6490232 -137792257 + AluY SINE Alu 1 294 -17 232 292 101 0 chr12 6490233 6490401 -137792088 - L1P4 LINE L1 -727 5438 5254 2299 121 0 3 chr12 6490525 6490838 -137791651 - AluSx SINE Alu 0 312 1 186 310 0 17 chr12 6491434 6491492 -137790997 - L2 LINE L2 -18 3254 3198 1217 221 79 79 chr12 6491512 6491824 -137790665 - MLT1C LTR MaLR -6 461 150 2178 132 7 0 chr12 6491824 6492128 -137790361 - AluSx SINE Alu -6 306 1 1870 133 10 58 chr12 6492130 6492439 -137790050 - AluSx SINE Alu -18 294 1 1217 221 79 79 chr12 6492439 6492579 -137789910 - MLT1C LTR MaLR -317 150 6 544 284 59 6 chr12 6492584 6492753 -137789736 - MIR SINE MIR -80 182 5 2266 90 3 20 chr12 6492858 6493158 -137789331 - AluY SINE Alu -16 295 1 342 277 92 31 chr12 6493170 6493300 -137789189 + L2 LINE L2 3167 3304 -9 563 266 25 61 chr12 6493626 6493710 -137788779 - L1ME LINE L1 -309 5812 5727 2629 59 0 0 chr12 6493710 6494015 -137788474 - AluY SINE Alu -6 305 1 563 266 25 61 chr12 6494015 6494208 -137788281 - L1ME LINE L1 -394 5727 5545 2039 159 124 28 chr12 6494640 6495098 -137787391 + MLT1D LTR MaLR 4 505 0 310 246 94 0 chr12 6495901 6496046 -137786443 + L1M4 LINE L1 2425 2620 -3526 988 192 0 6 chr12 6496048 6496215 -137786274 + AluJo SINE Alu 83 248 -64 1076 206 38 8 chr12 6496215 6496453 -137786036 - MER66A LTR ERV1 -7 471 227 3668 165 116 30 chr12 6496454 6497839 -137784650 + pTR5 LTR ERV1 741 2606 0 753 130 17 197 chr12 6497844 6497991 -137784498 - MER66A LTR ERV1 -256 222 133 2027 134 0 0 chr12 6497991 6498268 -137784221 - AluSx SINE Alu -35 277 1 753 130 17 197 chr12 6498268 6498359 -137784130 - MER66A LTR ERV1 -345 133 27 353 153 0 0 chr12 6498366 6498425 -137784064 + AluJo SINE Alu 238 296 -6 2130 112 0 30 chr12 6498431 6498736 -137783753 + AluSx SINE Alu 6 301 -11 277 234 26 0 chr12 6498751 6498828 -137783661 + L1MC/D LINE L1 5629 5707 -652 2062 66 96 0 chr12 6498829 6499101 -137783388 - AluY SINE Alu -13 298 1 1453 182 29 26 chr12 6499138 6499451 -137783038 + LOR1b LTR ERV1 70 383 -78 852 269 10 17 chr12 6499721 6500019 -137782470 + AluSx SINE Alu 17 312 0 232 292 101 0 chr12 6500142 6500310 -137782179 + L1P4 LINE L1 5254 5438 -727 1714 151 42 11 chr12 6500311 6500596 -137781893 - AluY SINE Alu -17 294 1 293 252 67 34 chr12 6500690 6500809 -137781680 + L1ME LINE L1 5577 5699 -422 1846 142 14 35 chr12 6501179 6501468 -137781021 - AluJb SINE Alu -29 283 1 420 279 114 67 chr12 6501911 6502226 -137780263 + L1 LINE L1 2164 2493 -3653 281 256 67 0 chr12 6502302 6502392 -137780097 - MLT1J LTR MaLR -60 451 356 227 235 0 44 chr12 6502795 6502863 -137779626 + L1MEd LINE L1 330 394 -5725 2231 87 11 0 chr12 6502875 6503161 -137779328 + AluY SINE Alu 1 289 -22 35 27 0 0 chr12 6503348 6503385 -137779104 + GC_rich Low_complexity Low_complexity 1 37 0 272 134 34 34 chr12 6503441 6503560 -137778929 + (TTG)n Simple_repeat Simple_repeat 2 120 0 1442 142 0 0 chr12 6503715 6503920 -137778569 + AluSq SINE Alu 107 311 -2 311 218 0 0 chr12 6503921 6503976 -137778513 - L1MC4 LINE L1 -221 7821 7767 2577 59 0 0 chr12 6503976 6504279 -137778210 + AluY SINE Alu 1 303 -8 760 138 144 28 chr12 6504280 6504461 -137778028 + L1MD1 LINE L1 5828 6029 -213 318 231 13 0 chr12 6504461 6504539 -137777950 + LOR1a LTR ERV1 1 79 -418 2555 45 3 3 chr12 6504551 6504859 -137777630 - AluY SINE Alu -3 308 1 1570 164 23 26 chr12 6504896 6505206 -137777283 + LOR1b LTR ERV1 70 378 -83 2020 125 7 0 chr12 6505206 6505493 -137776996 + AluSx SINE Alu 1 289 -23 774 294 33 82 chr12 6505695 6506147 -137776342 - L2 LINE L2 -32 3240 2811 3274 129 66 15 chr12 6506298 6506497 -137775992 + MER41C LTR ERV1 1 188 -366 2319 104 3 0 chr12 6506497 6506794 -137775695 - AluSg SINE Alu -12 298 1 3274 129 66 15 chr12 6506794 6507121 -137775368 + MER41C LTR ERV1 188 554 0 206 295 53 11 chr12 6507206 6507301 -137775188 - MIR3 SINE MIR -102 106 8 183 286 0 95 chr12 6507371 6507455 -137775034 - MIR3 SINE MIR -21 187 112 2339 102 3 0 chr12 6508116 6508421 -137774068 + AluSx SINE Alu 1 306 -6 2518 68 0 10 chr12 6508541 6508850 -137773639 - AluY SINE Alu -5 306 1 397 217 42 17 chr12 6509063 6509183 -137773306 + Charlie8 DNA MER1_type 349 471 -1946 657 242 92 35 chr12 6509205 6509569 -137772920 - MLT1F LTR MaLR -117 425 1 641 288 50 68 chr12 6509630 6510048 -137772441 + L1ME4a LINE L1 2320 2744 -3402 2308 62 0 4 chr12 6510048 6510323 -137772166 + AluY SINE Alu 1 274 -37 261 75 0 0 chr12 6510327 6510367 -137772122 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 641 288 50 68 chr12 6510367 6510561 -137771928 + L1ME4a LINE L1 2747 2926 -3220 2545 59 0 0 chr12 6510692 6510981 -137771508 - AluY SINE Alu -20 291 3 2043 139 3 0 chr12 6511187 6511489 -137771000 - AluSg SINE Alu -7 303 1 577 271 65 13 chr12 6511625 6511780 -137770709 - MLT1J LTR MaLR -348 163 1 1617 276 86 39 chr12 6511811 6512342 -137770147 + L1ME4a LINE L1 3644 4149 -1997 2265 60 57 7 chr12 6512342 6512623 -137769866 + AluY SINE Alu 1 295 -16 1617 276 86 39 chr12 6512623 6513307 -137769182 + L1ME4a LINE L1 4149 4916 -1230 300 256 211 65 chr12 6513322 6513521 -137768968 + L1ME4a LINE L1 5521 5748 -373 2248 90 4 0 chr12 6513599 6513877 -137768612 - AluSq SINE Alu -10 303 25 325 331 44 44 chr12 6513925 6514106 -137768383 + L1ME3A LINE L1 5963 6143 -27 2470 67 0 7 chr12 6514676 6514976 -137767513 + AluSc SINE Alu 1 298 -11 2205 79 10 10 chr12 6515360 6515665 -137766824 - AluSq SINE Alu -8 305 1 1563 171 7 7 chr12 6515961 6516242 -137766247 - AluJb SINE Alu -30 282 2 480 332 46 37 chr12 6516260 6516501 -137765988 + L1ME4a LINE L1 5775 6017 -104 352 266 141 8 chr12 6516504 6516632 -137765857 - MER5A DNA MER1_type -3 186 42 1718 214 37 8 chr12 6516632 6517033 -137765456 - MER63B DNA MER1_type -23 413 1 1461 189 14 21 chr12 6517102 6517393 -137765096 - L1MA5 LINE L1 0 6300 6012 494 287 97 35 chr12 6518289 6518578 -137763911 - L2 LINE L2 -7 3306 3000 5992 141 240 19 chr12 6518578 6519959 -137762530 + pTR5 LTR ERV1 753 2438 0 1102 254 56 25 chr12 6519986 6520450 -137762039 - L2 LINE L2 -350 2964 2437 873 237 102 102 chr12 6520887 6521308 -137761181 - MLT1J LTR MaLR -60 451 28 1631 174 7 13 chr12 6521308 6521607 -137760882 + AluJb SINE Alu 1 297 -15 873 237 102 102 chr12 6521607 6521636 -137760853 - MLT1J LTR MaLR -482 29 1 961 88 7 7 chr12 6521720 6521856 -137760633 - MER85 DNA T2_type -3 136 1 422 311 84 6 chr12 6521914 6522081 -137760408 - MIR SINE MIR -67 195 16 2312 84 0 0 chr12 6522414 6522713 -137759776 - AluY SINE Alu -12 299 1 221 310 17 0 chr12 6523088 6523146 -137759343 - MIR3 SINE MIR -1 207 149 536 229 95 50 chr12 6523243 6523422 -137759067 + MIR SINE MIR 13 199 -63 807 154 22 29 chr12 6523423 6523559 -137758930 + AluJo SINE Alu 2 136 -176 21 0 0 0 chr12 6523559 6523580 -137758909 + AT_rich Low_complexity Low_complexity 1 21 0 1752 117 4 0 chr12 6523580 6523836 -137758653 + AluY SINE Alu 37 293 -18 2203 92 7 3 chr12 6523838 6524144 -137758345 + AluSc SINE Alu 1 307 -2 1758 109 143 4 chr12 6524183 6524480 -137758009 - AluSq SINE Alu 0 334 1 3435 204 21 20 chr12 6524484 6525084 -137757405 + MER82 DNA MER2_type 1 604 -49 2334 81 0 7 chr12 6525084 6525394 -137757095 - AluY SINE Alu -3 308 1 3435 204 21 20 chr12 6525394 6525445 -137757044 + MER82 DNA MER2_type 604 653 0 219 269 0 0 chr12 6525446 6525498 -137756991 + MIR SINE MIR 198 249 -13 412 315 63 0 chr12 6525499 6525642 -137756847 - MIR SINE MIR -63 199 48 2387 83 0 3 chr12 6525835 6526147 -137756342 + AluY SINE Alu 1 311 0 589 256 108 5 chr12 6526689 6526884 -137755605 + MER58C DNA MER1_type 1 215 0 215 348 36 18 chr12 6526924 6527036 -137755453 + MIR SINE MIR 34 147 -61 187 270 130 78 chr12 6527210 6527325 -137755164 - MIR SINE MIR -114 148 28 2144 96 3 0 chr12 6527471 6527753 -137754736 - AluSq SINE Alu -30 283 1 2296 94 7 0 chr12 6528859 6529168 -137753321 - AluSx SINE Alu -1 311 1 847 200 141 11 chr12 6529206 6529726 -137752763 + L1MC4 LINE L1 7177 7694 -91 2142 104 7 10 chr12 6529726 6530033 -137752456 + AluSx SINE Alu 1 306 -6 847 200 141 11 chr12 6530033 6530139 -137752350 + L1MC4 LINE L1 7694 7785 0 239 196 11 120 chr12 6530213 6530245 -137752244 + MIR SINE MIR 2 36 -226 2513 40 0 3 chr12 6530245 6530545 -137751944 + AluY SINE Alu 1 299 -12 239 196 11 120 chr12 6530545 6530604 -137751885 + MIR SINE MIR 36 83 -179 373 316 9 9 chr12 6531383 6531497 -137750992 + MIR SINE MIR 24 137 -71 308 258 34 11 chr12 6531777 6531866 -137750623 - MIR SINE MIR -84 124 34 184 280 119 59 chr12 6532025 6532143 -137750346 - L2 LINE L2 0 3272 3148 2077 110 69 39 chr12 6532189 6532553 -137749936 + THE1C LTR MaLR 1 375 0 229 292 62 31 chr12 6533142 6533238 -137749251 - MLT1K LTR MaLR -461 127 29 463 220 0 23 chr12 6533529 6533661 -137748828 + L1MC4a LINE L1 4926 5054 -1092 25 51 0 0 chr12 6533738 6533777 -137748712 + AT_rich Low_complexity Low_complexity 1 39 0 1240 248 177 18 chr12 6533857 6533892 -137748597 + L1MC4a LINE L1 5258 5286 -2522 2093 128 3 0 chr12 6533892 6534189 -137748300 + AluSx SINE Alu 1 298 -14 1240 248 177 18 chr12 6534189 6534308 -137748181 + L1MC4a LINE L1 5286 5385 -2423 2078 100 0 32 chr12 6534308 6534618 -137747871 + AluY SINE Alu 1 300 -11 1240 248 177 18 chr12 6534618 6535068 -137747421 + L1MC4a LINE L1 5385 5959 -1849 2143 73 0 4 chr12 6535069 6535343 -137747146 + AluY SINE Alu 1 273 -38 375 75 0 0 chr12 6535343 6535396 -137747093 + Alu SINE Alu 243 295 -7 1673 164 13 41 chr12 6535614 6535755 -137746734 + AluJb SINE Alu 1 144 -168 2343 46 0 36 chr12 6535755 6536058 -137746431 + AluY SINE Alu 1 292 -19 1673 164 13 41 chr12 6536058 6536234 -137746255 + AluJb SINE Alu 144 309 -3 309 397 21 52 chr12 6536435 6536629 -137745860 + L1MC4a LINE L1 6414 6601 -1207 1020 76 15 0 chr12 6536828 6536959 -137745530 - AluSq/x SINE Alu -180 133 1 373 305 178 9 chr12 6537171 6537384 -137745105 - LTR33 LTR ERVL -115 406 158 421 299 55 83 chr12 6537642 6538027 -137744462 + L2 LINE L2 2899 3272 0 960 212 92 39 chr12 6538795 6539078 -137743411 - MLT1C LTR MaLR 0 467 170 1055 194 70 0 chr12 6539081 6539323 -137743166 - L1MB3 LINE L1 -65 6118 5860 829 209 5 31 chr12 6539331 6539522 -137742967 - MLT1C LTR MaLR -273 194 9 458 333 96 8 chr12 6539954 6540351 -137742138 - L2 LINE L2 -2 3311 2880 751 170 0 9 chr12 6540354 6540821 -137741668 + (TG)n Simple_repeat Simple_repeat 1 462 0 2193 104 7 0 chr12 6542100 6542409 -137740080 + AluSq SINE Alu 1 311 -2 406 265 197 0 chr12 6542487 6542634 -137739855 + L3 LINE CR1 1263 1438 -139 902 237 47 5 chr12 6543105 6543320 -137739169 - MIR SINE MIR -14 248 25 2064 184 78 23 chr12 6543393 6543865 -137738624 - MLT1D LTR MaLR -7 498 1 1395 130 113 45 chr12 6543883 6544175 -137738314 + AluSx SINE Alu 1 312 0 1054 230 41 70 chr12 6544380 6544596 -137737893 - L1MC5 LINE L1 -55 7906 7706 2542 42 0 3 chr12 6544596 6544906 -137737583 + AluY SINE Alu 1 309 -2 1054 230 41 70 chr12 6544906 6545102 -137737387 - L1MC5 LINE L1 -255 7706 7506 22 35 0 0 chr12 6545177 6545206 -137737283 + AT_rich Low_complexity Low_complexity 1 29 0 224 360 13 0 chr12 6545628 6545703 -137736786 + MIR SINE MIR 32 107 -101 1222 179 112 13 chr12 6545983 6546060 -137736429 + L1MD3 LINE L1 7653 7721 -274 2044 116 10 7 chr12 6546060 6546370 -137736119 + AluSx SINE Alu 1 311 -1 1222 179 112 13 chr12 6546370 6546604 -137735885 + L1MD3 LINE L1 7721 7995 0 433 212 71 0 chr12 6546613 6546712 -137735777 + AluSg/x SINE Alu 207 312 0 274 103 0 52 chr12 6546712 6546770 -137735719 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 1889 163 0 0 chr12 6546815 6547115 -137735374 + AluJb SINE Alu 1 300 -12 208 214 89 0 chr12 6547849 6547905 -137734584 + L2 LINE L2 3203 3263 -9 303 308 57 58 chr12 6548085 6548295 -137734194 - MIR SINE MIR -50 212 3 529 249 194 15 chr12 6548767 6548968 -137733521 + MIR SINE MIR 23 259 -3 895 160 0 0 chr12 6549043 6549187 -137733302 - AluSg/x SINE Alu -20 292 149 696 106 53 9 chr12 6549187 6549300 -137733189 - LTR5 LTR ERVK 0 969 852 4793 127 184 71 chr12 6549303 6550708 -137731781 - pTR5 LTR ERV1 0 2438 739 6064 62 82 1 chr12 6550708 6551498 -137730991 - LTR5 LTR ERVK -115 854 1 1125 108 13 0 chr12 6551519 6551677 -137730812 - AluSc SINE Alu -18 291 132 2481 56 0 0 chr12 6551677 6551980 -137730509 - AluY SINE Alu -8 303 1 487 193 119 51 chr12 6552355 6552531 -137729958 - L2 LINE L2 -1 3312 3125 180 321 19 0 chr12 6553245 6553298 -137729191 + MIR SINE MIR 30 83 -125 1377 175 144 12 chr12 6553532 6553914 -137728575 - MLT1D LTR MaLR -8 497 15 1842 117 3 73 chr12 6553926 6554078 -137728411 + AluSx SINE Alu 1 121 -191 2240 88 0 0 chr12 6554078 6554363 -137728126 + AluSg SINE Alu 8 292 -18 1842 117 3 73 chr12 6554363 6554526 -137727963 + AluSx SINE Alu 121 294 -18 242 335 102 28 chr12 6554672 6554926 -137727563 - L2 LINE L2 -6 3266 2994 365 271 90 36 chr12 6555398 6555444 -137727045 - MIR3 SINE MIR -12 196 154 2414 123 121 139 chr12 6555444 6555960 -137726529 - MER4A LTR ERV1 0 664 140 2343 60 0 3 chr12 6555960 6556260 -137726229 - AluY SINE Alu -8 303 5 2414 123 121 139 chr12 6556260 6556277 -137726212 - MER4A LTR ERV1 -524 140 124 2278 84 0 0 chr12 6556277 6556576 -137725913 - AluSc SINE Alu -10 299 1 2414 123 121 139 chr12 6556576 6556717 -137725772 - MER4A LTR ERV1 -540 124 1 365 271 90 36 chr12 6556717 6556836 -137725653 - MIR3 SINE MIR -54 154 22 220 336 37 0 chr12 6556936 6557043 -137725446 - MIR SINE MIR -3 259 149 206 275 108 62 chr12 6557332 6557590 -137724899 + L2 LINE L2 2844 3113 -159 268 294 123 12 chr12 6557870 6558033 -137724456 + L2 LINE L2 2626 2806 -508 310 293 106 8 chr12 6558394 6558517 -137723972 + L1ME4a LINE L1 5982 6116 -5 208 95 12 83 chr12 6559503 6559587 -137722902 + (CGGGGG)n Simple_repeat Simple_repeat 4 81 0 1696 162 17 7 chr12 6561028 6561330 -137721159 + AluJb SINE Alu 1 305 -7 353 318 101 14 chr12 6562045 6562193 -137720296 - MIR3 SINE MIR -28 180 20 301 309 0 40 chr12 6562404 6562530 -137719959 - MIR SINE MIR -112 150 30 664 244 44 11 chr12 6563307 6563487 -137719002 + MIR3 SINE MIR 12 197 -11 543 166 131 9 chr12 6563555 6563674 -137718815 + L1PB4 LINE L1 6034 6165 -1 222 311 113 9 chr12 6563889 6563995 -137718494 + MIR SINE MIR 113 229 -33 181 28 0 83 chr12 6564869 6564905 -137717584 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1845 153 10 32 chr12 6565482 6565795 -137716694 - AluJb SINE Alu -6 306 1 1591 167 85 4 chr12 6566172 6566453 -137716036 - AluJo SINE Alu -8 304 1 2448 97 3 0 chr12 6567214 6567522 -137714967 + AluSp SINE Alu 1 309 -4 2208 97 28 0 chr12 6567830 6568118 -137714371 - AluSp SINE Alu 0 313 18 2249 99 31 0 chr12 6568239 6568531 -137713958 - AluSx SINE Alu -11 301 1 2466 100 0 0 chr12 6568947 6569256 -137713233 - AluSx SINE Alu -3 309 1 615 294 38 47 chr12 6570003 6570107 -137712382 + MIR SINE MIR 1 104 -158 2326 87 3 3 chr12 6570107 6570407 -137712082 - AluSg SINE Alu -10 300 1 615 294 38 47 chr12 6570407 6570537 -137711952 + MIR SINE MIR 104 233 -29 298 268 18 45 chr12 6571475 6571587 -137710902 + MIR3 SINE MIR 63 171 -37 366 326 21 0 chr12 6572276 6572420 -137710069 + MIR SINE MIR 95 241 -21 200 176 0 0 chr12 6572429 6572463 -137710026 + (CTG)n Simple_repeat Simple_repeat 1 34 0 327 273 61 0 chr12 6573373 6573472 -137709017 + MIR SINE MIR 51 155 -107 1791 130 14 14 chr12 6573616 6573893 -137708596 - AluJb SINE Alu -6 306 30 511 217 97 23 chr12 6574634 6574809 -137707680 - MER5A DNA MER1_type -1 188 1 375 330 5 60 chr12 6576211 6576396 -137706093 - MIR SINE MIR -41 221 47 1821 157 7 30 chr12 6576512 6576811 -137705678 + AluJb SINE Alu 1 292 -20 2112 135 0 10 chr12 6577214 6577511 -137704978 + AluJb SINE Alu 1 294 -18 2459 94 0 0 chr12 6578269 6578577 -137703912 - AluSx SINE Alu -4 308 1 2539 77 0 0 chr12 6578746 6579056 -137703433 - AluY SINE Alu -1 310 1 1765 187 29 8 chr12 6579998 6580383 -137702106 - L1MD3 LINE L1 -15 7980 7588 1895 128 0 64 chr12 6580965 6581277 -137701212 + AluJo SINE Alu 1 292 -20 2553 60 0 0 chr12 6582533 6582832 -137699657 - AluY SINE Alu -12 299 1 434 245 63 14 chr12 6584321 6584464 -137698025 - L1ME3A LINE L1 -241 5929 5780 2413 93 3 0 chr12 6586457 6586769 -137695720 - AluSp SINE Alu 0 313 1 476 306 87 15 chr12 6586776 6586972 -137695517 - MIR SINE MIR -7 255 46 231 94 0 0 chr12 6587539 6587571 -137694918 - Alu SINE Alu -227 75 44 2040 103 0 25 chr12 6587571 6587853 -137694636 + AluSx SINE Alu 31 305 -7 197 226 19 0 chr12 6588612 6588665 -137693824 + MIR SINE MIR 78 131 -77 590 211 16 16 chr12 6590547 6590675 -137691814 - MIR SINE MIR -59 203 76 531 259 8 15 chr12 6591145 6591276 -137691213 - MIR SINE MIR -58 150 21 661 120 19 0 chr12 6593619 6593727 -137688762 - HY1 scRNA scRNA -2 110 1 324 257 154 22 chr12 6593979 6594115 -137688374 - MIR SINE MIR -26 236 83 235 364 148 0 chr12 6595590 6595799 -137686690 - MIR SINE MIR -11 251 12 2379 95 16 3 chr12 6596240 6596546 -137685943 - AluSq SINE Alu -3 310 1 385 163 95 0 chr12 6596573 6596671 -137685818 + AluSg/x SINE Alu 208 299 -3 221 21 42 42 chr12 6597154 6597202 -137685287 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2530 67 3 0 chr12 6597617 6597914 -137684575 - AluSp SINE Alu -15 298 1 256 362 17 17 chr12 6597955 6598071 -137684418 - MIR SINE MIR -62 146 31 253 147 156 156 chr12 6598113 6598222 -137684267 + L2 LINE L2 3205 3313 0 509 219 0 49 chr12 6598227 6598350 -137684139 - MLT2F LTR ERVL 0 663 547 1996 136 3 10 chr12 6598438 6598739 -137683750 - AluJb SINE Alu -13 299 1 719 176 11 13 chr12 6598762 6598945 -137683544 - MLT2F LTR ERVL -434 229 2 2145 161 67 38 chr12 6599179 6599605 -137682884 + L1MB4 LINE L1 5689 6132 -48 1738 191 20 0 chr12 6599605 6599899 -137682590 + AluJb SINE Alu 1 300 -12 2145 161 67 38 chr12 6599899 6599950 -137682539 + L1MB4 LINE L1 6132 6180 0 2248 111 3 0 chr12 6600061 6600367 -137682122 - AluSx SINE Alu -5 307 1 402 313 117 65 chr12 6601534 6601725 -137680764 + L3 LINE CR1 455 635 -942 2347 89 0 13 chr12 6601725 6602029 -137680460 + AluSx SINE Alu 1 300 -12 2213 105 7 3 chr12 6602031 6602326 -137680163 + AluSc SINE Alu 1 296 -13 402 313 117 65 chr12 6602326 6602483 -137680006 + L3 LINE CR1 635 824 -753 313 224 80 124 chr12 6602659 6602762 -137679727 - MLT1J LTR MaLR -174 337 231 2327 103 0 3 chr12 6602762 6603063 -137679426 + AluY SINE Alu 1 300 -11 313 224 80 124 chr12 6603063 6603209 -137679280 - MLT1J LTR MaLR -280 231 99 185 304 45 45 chr12 6603271 6603383 -137679106 - MIR SINE MIR -65 143 32 684 323 166 28 chr12 6603427 6604071 -137678418 + L3 LINE CR1 793 1525 -52 3675 93 0 6 chr12 6604703 6605217 -137677272 - MER9 LTR ERVK 0 511 1 2323 104 3 0 chr12 6605299 6605597 -137676892 - AluSp SINE Alu -14 299 1 2513 67 0 0 chr12 6605599 6605898 -137676591 - AluY SINE Alu -7 304 6 2292 112 0 3 chr12 6606427 6606731 -137675758 - AluSx SINE Alu -7 305 3 187 118 59 0 chr12 6607116 6607150 -137675339 + MIR SINE MIR 117 152 -110 2361 118 0 0 chr12 6607165 6607471 -137675018 + AluY SINE Alu 1 306 -5 242 162 0 0 chr12 6607787 6607824 -137674665 + Alu SINE Alu 2 38 -264 2075 129 23 13 chr12 6607824 6608133 -137674356 - AluSx SINE Alu 0 312 1 645 256 97 13 chr12 6608889 6609187 -137673302 - LTR50 LTR ERVL 0 678 296 2223 122 0 0 chr12 6610326 6610620 -137671869 - AluSx SINE Alu -18 294 1 2571 73 0 0 chr12 6611074 6611377 -137671112 - AluY SINE Alu -8 303 1 1929 120 7 37 chr12 6611548 6611847 -137670642 - AluJb SINE Alu -22 290 1 1195 149 0 0 chr12 6612048 6612229 -137670260 + AluSg/x SINE Alu 130 310 -2 346 269 57 46 chr12 6612238 6612413 -137670076 - MLT1L LTR MaLR -365 250 74 438 228 0 20 chr12 6612548 6612649 -137669840 - L2 LINE L2 -2644 670 572 1945 130 56 11 chr12 6612897 6613182 -137669307 + AluSg SINE Alu 1 298 -12 384 228 99 0 chr12 6613350 6613451 -137669038 + MIR SINE MIR 35 145 -117 2287 101 13 0 chr12 6613455 6613762 -137668727 + AluSq SINE Alu 1 311 -2 465 253 95 13 chr12 6614048 6614206 -137668283 + L2 LINE L2 576 746 -2568 230 188 203 14 chr12 6614225 6614294 -137668195 + MER112 DNA MER1_type 5 86 -174 2349 112 0 3 chr12 6614306 6614618 -137667871 + AluY SINE Alu 1 311 0 547 267 158 0 chr12 6614625 6614709 -137667780 + MER112 DNA MER1_type 64 133 -127 201 74 0 0 chr12 6614709 6614736 -137667753 + (CTATT)n Simple_repeat Simple_repeat 4 30 0 547 267 158 0 chr12 6614736 6614816 -137667673 + MER112 DNA MER1_type 133 254 -6 400 186 0 0 chr12 6614903 6614973 -137667516 + FLAM_A SINE Alu 16 85 -57 228 246 0 0 chr12 6615011 6615068 -137667421 - L2 LINE L2 -1215 2099 2043 368 241 183 16 chr12 6615070 6615261 -137667228 + L2 LINE L2 834 1056 -2258 2303 95 0 0 chr12 6615261 6615545 -137666944 + AluSq SINE Alu 1 329 0 385 22 0 0 chr12 6615545 6615590 -137666899 + (TAA)n Simple_repeat Simple_repeat 2 180 0 418 224 39 83 chr12 6615597 6615622 -137666867 - L2 LINE L2 -1 3312 3287 2315 106 0 7 chr12 6615622 6615925 -137666564 + AluSx SINE Alu 1 301 -11 418 224 39 83 chr12 6615925 6616055 -137666434 - L2 LINE L2 -26 3287 3164 2517 90 3 0 chr12 6616056 6616368 -137666121 + AluSp SINE Alu 1 313 0 14039 114 36 36 chr12 6616405 6618768 -137663721 - Tigger1 DNA MER2_type 0 2418 52 2460 67 0 17 chr12 6618768 6619068 -137663421 + AluY SINE Alu 2 296 -15 14039 114 36 36 chr12 6619068 6619118 -137663371 - Tigger1 DNA MER2_type -2366 52 4 339 242 20 0 chr12 6619122 6619221 -137663268 - L2 LINE L2 -363 2951 2851 2058 148 7 0 chr12 6619222 6619526 -137662963 + AluJb SINE Alu 1 306 -6 207 0 0 0 chr12 6619527 6619550 -137662939 + (CA)n Simple_repeat Simple_repeat 2 24 0 327 238 0 0 chr12 6619555 6619618 -137662871 + L1MC4 LINE L1 6640 6702 -1340 1712 253 165 39 chr12 6619620 6619933 -137662556 - L2 LINE L2 -453 2861 2589 2506 54 3 3 chr12 6619933 6620230 -137662259 - AluY SINE Alu -14 297 1 1712 253 165 39 chr12 6620230 6620754 -137661735 - L2 LINE L2 -725 2589 1919 2379 95 0 0 chr12 6620755 6621050 -137661439 - AluSq SINE Alu -6 307 13 1270 84 0 0 chr12 6621063 6621217 -137661272 - AluSq SINE Alu -8 305 152 200 239 155 0 chr12 6622541 6622612 -137659877 + MIR SINE MIR 107 188 -74 1315 175 69 95 chr12 6622625 6622730 -137659759 + MLT2D LTR ERVL 3 109 -305 2241 97 26 26 chr12 6622730 6623041 -137659448 + AluSx SINE Alu 1 311 -1 1315 175 69 95 chr12 6623041 6623358 -137659131 + MLT2D LTR ERVL 109 414 0 195 344 33 0 chr12 6623746 6623836 -137658653 - MIR3 SINE MIR -29 179 87 184 388 30 8 chr12 6623875 6624009 -137658480 - MIR SINE MIR -55 153 17 240 233 0 0 chr12 6624358 6624401 -137658088 - L2 LINE L2 -259 3054 3012 338 213 33 57 chr12 6624466 6624588 -137657901 + MIR SINE MIR 25 143 -119 862 142 0 0 chr12 6624599 6624726 -137657763 + FLAM_C SINE Alu 15 141 -2 396 194 83 9 chr12 6624732 6624840 -137657649 + MIR SINE MIR 137 252 -10 2426 90 0 7 chr12 6624862 6625163 -137657326 + AluSg1 SINE Alu 1 299 -10 276 30 0 0 chr12 6625163 6625196 -137657293 + (TA)n Simple_repeat Simple_repeat 2 34 0 2156 141 3 0 chr12 6625202 6625500 -137656989 + AluSq SINE Alu 1 299 -14 1975 149 0 7 chr12 6625517 6625819 -137656670 + AluSx SINE Alu 1 300 -12 276 170 0 0 chr12 6626278 6626331 -137656158 + (CA)n Simple_repeat Simple_repeat 1 53 0 306 327 6 12 chr12 6626475 6626640 -137655849 + L1MC4a LINE L1 5872 6035 -1773 2307 111 0 7 chr12 6627010 6627316 -137655173 + AluSq SINE Alu 1 304 -9 823 164 57 0 chr12 6627323 6627463 -137655026 + FRAM SINE Alu 11 158 -18 54 29 0 0 chr12 6627504 6627572 -137654917 + AT_rich Low_complexity Low_complexity 1 68 0 216 0 0 0 chr12 6628352 6628376 -137654113 + (A)n Simple_repeat Simple_repeat 1 24 0 546 290 68 27 chr12 6628396 6628617 -137653872 + MIR SINE MIR 21 250 -12 2502 71 0 10 chr12 6628646 6628954 -137653535 - AluY SINE Alu -6 305 1 359 283 106 33 chr12 6629019 6629199 -137653290 - MLT1K LTR MaLR 0 588 396 204 186 0 0 chr12 6629238 6629297 -137653192 + T-rich Low_complexity Low_complexity 1 59 0 240 111 0 0 chr12 6629712 6629748 -137652741 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 304 39 0 0 chr12 6629749 6629800 -137652689 + AluSp/q SINE Alu 253 303 0 652 277 64 84 chr12 6629816 6630120 -137652369 - MLT1E LTR MaLR -149 444 135 2372 61 4 0 chr12 6630120 6630430 -137652059 - AluY SINE Alu 0 311 1 1818 175 3 3 chr12 6630432 6630717 -137651772 - AluJb SINE Alu -17 295 11 652 277 64 84 chr12 6630717 6630848 -137651641 - MLT1E LTR MaLR -459 134 14 803 219 112 85 chr12 6630848 6630938 -137651551 - L2 LINE L2 -520 2794 2708 2375 98 0 0 chr12 6630938 6631233 -137651256 - AluSc SINE Alu -14 295 1 803 219 112 85 chr12 6631233 6631259 -137651230 - L2 LINE L2 -606 2708 2684 2034 103 0 35 chr12 6631259 6631574 -137650915 + AluY SINE Alu 1 305 0 803 219 112 85 chr12 6631574 6631821 -137650668 - L2 LINE L2 -630 2684 2419 251 307 168 0 chr12 6631968 6632069 -137650420 - L2 LINE L2 -5 3267 3150 1354 154 82 82 chr12 6632336 6632511 -137649978 - AluJo SINE Alu -20 292 115 315 0 0 0 chr12 6632511 6632546 -137649943 + (TG)n Simple_repeat Simple_repeat 2 36 0 1354 154 82 82 chr12 6632546 6632662 -137649827 - AluJo SINE Alu -196 116 1 1054 237 101 29 chr12 6632689 6633174 -137649315 - LTR33 LTR ERVL -1 520 1 326 276 168 0 chr12 6634610 6634752 -137647737 - MIR SINE MIR -55 207 33 2017 112 0 58 chr12 6634813 6635126 -137647363 + AluSx SINE Alu 1 295 -17 419 261 62 15 chr12 6635680 6635810 -137646679 + MER5B DNA MER1_type 43 178 0 2328 95 0 3 chr12 6635964 6636260 -137646229 + AluSg SINE Alu 1 295 -15 696 267 23 28 chr12 6636542 6636759 -137645730 + MIR SINE MIR 22 237 -25 244 229 0 0 chr12 6636773 6636834 -137645655 + (TA)n Simple_repeat Simple_repeat 1 61 0 521 178 19 9 chr12 6636920 6637027 -137645462 - FLAM_A SINE Alu -15 127 20 1517 166 104 6 chr12 6637039 6637377 -137645112 - Tigger2a DNA MER2_type -63 371 1 284 246 0 0 chr12 6637390 6637447 -137645042 - MIR SINE MIR -9 253 197 22 35 0 0 chr12 6638021 6638050 -137644439 + GC_rich Low_complexity Low_complexity 1 29 0 1648 165 3 14 chr12 6638307 6638604 -137643885 - AluJb SINE Alu -15 297 4 223 323 152 0 chr12 6639329 6639428 -137643061 - MIR SINE MIR -69 193 80 259 205 128 0 chr12 6639635 6639713 -137642776 + L2 LINE L2 3225 3312 -1 185 176 0 0 chr12 6639886 6639920 -137642569 - L3b LINE CR1 -196 1387 1354 * 447 304 213 41 chr12 6639897 6640983 -137641506 + L2 LINE L2 397 1295 -2019 2131 125 13 0 chr12 6640983 6641286 -137641203 + AluSx SINE Alu 1 307 -5 447 304 213 41 chr12 6641286 6641842 -137640647 + L2 LINE L2 1295 2321 -993 22 56 0 0 chr12 6642015 6642051 -137640438 + AT_rich Low_complexity Low_complexity 1 36 0 2339 143 70 64 chr12 6642051 6642142 -137640347 + L1MB2 LINE L1 5652 5741 -430 1881 125 0 45 chr12 6642142 6642429 -137640060 + AluJo SINE Alu 5 278 -34 233 0 62 0 chr12 6642434 6642466 -137640023 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2339 143 70 64 chr12 6642466 6642834 -137639655 + L1MB2 LINE L1 5744 6123 -48 2395 90 10 0 chr12 6642834 6643135 -137639354 + AluSp SINE Alu 1 304 -9 2339 143 70 64 chr12 6643135 6643185 -137639304 + L1MB2 LINE L1 6123 6171 0 660 132 61 0 chr12 6643223 6643337 -137639152 - AluSx SINE Alu -11 301 181 843 85 9 0 chr12 6643337 6643443 -137639046 - AluSx SINE Alu -205 107 1 228 333 31 0 chr12 6643444 6643540 -137638949 + L2 LINE L2 2725 2823 -491 224 341 41 0 chr12 6643762 6643885 -137638604 + L2 LINE L2 3142 3269 -3 434 311 106 6 chr12 6643918 6644079 -137638410 + MIR SINE MIR 36 212 -50 2030 152 10 0 chr12 6644892 6645194 -137637295 - AluJo SINE Alu -7 305 1 2328 58 44 31 chr12 6645914 6646208 -137636281 - AluSg SINE Alu -11 299 2 2438 65 0 29 chr12 6646484 6646793 -137635696 + AluY SINE Alu 1 300 -11 1513 198 88 0 chr12 6646807 6647080 -137635409 + AluJb SINE Alu 1 297 -15 1302 166 60 19 chr12 6647080 6647345 -137635144 - L1MB7 LINE L1 -171 6013 5738 990 137 0 0 chr12 6647356 6647495 -137634994 - AluJb SINE Alu -15 297 159 2614 171 37 27 chr12 6647496 6647790 -137634699 - L1M4 LINE L1 -394 5784 5495 2206 79 0 41 chr12 6647790 6648107 -137634382 - AluY SINE Alu -4 307 4 2614 171 37 27 chr12 6648107 6648325 -137634164 - L1M4 LINE L1 -683 5495 5281 2272 95 24 0 chr12 6648325 6648447 -137634042 + AluSx SINE Alu 1 119 -193 192 77 0 0 chr12 6648447 6648473 -137634016 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2272 95 24 0 chr12 6648473 6648644 -137633845 + AluSx SINE Alu 119 301 -11 2614 171 37 27 chr12 6648644 6648866 -137633623 - L1M4 LINE L1 -897 5281 5050 1175 147 73 10 chr12 6648873 6649077 -137633412 - AluJb SINE Alu -9 303 87 1007 203 66 4 chr12 6649080 6649321 -137633168 - L1M4 LINE L1 -1092 5054 4799 2122 191 32 92 chr12 6650916 6651300 -137631189 - L1M4 LINE L1 -1332 4814 4486 2536 80 0 0 chr12 6651300 6651611 -137630878 + AluY SINE Alu 1 311 0 2122 191 32 92 chr12 6651611 6651902 -137630587 - L1M4 LINE L1 -1660 4486 4179 242 141 51 77 chr12 6652165 6652243 -137630246 + L1MB4 LINE L1 6105 6180 0 872 191 0 13 chr12 6652554 6652706 -137629783 - AluJb SINE Alu -22 290 141 2048 152 0 0 chr12 6652717 6653006 -137629483 - AluSx SINE Alu -14 298 10 2329 97 13 7 chr12 6653134 6653433 -137629056 + AluSx SINE Alu 1 301 -11 705 106 0 0 chr12 6653454 6653558 -137628931 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 215 122 0 24 chr12 6653601 6653642 -137628847 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 758 148 7 22 chr12 6653652 6653787 -137628702 + FLAM_C SINE Alu 1 133 0 260 287 107 24 chr12 6653799 6653982 -137628507 + MIR SINE MIR 19 212 -50 214 317 43 30 chr12 6654806 6654970 -137627519 + L2 LINE L2 2864 3029 -243 264 259 155 23 chr12 6654997 6655026 -137627463 - MLT1J LTR MaLR -24 487 463 2163 108 0 0 chr12 6655026 6655303 -137627186 + AluSx SINE Alu 1 277 -35 264 259 155 23 chr12 6655303 6655447 -137627042 - MLT1J LTR MaLR -48 463 291 1110 203 50 86 chr12 6655601 6655843 -137626646 + MER97a DNA MER1_type? 12 261 -633 2346 95 0 0 chr12 6655843 6656150 -137626339 + AluSx SINE Alu 1 307 0 1110 203 50 86 chr12 6656150 6656204 -137626285 + MER97a DNA MER1_type? 261 315 -579 2630 46 13 0 chr12 6656204 6656510 -137625979 + AluY SINE Alu 1 310 -1 1110 203 50 86 chr12 6656510 6656595 -137625894 + MER97a DNA MER1_type? 315 381 -513 2659 180 8 95 chr12 6656635 6656706 -137625783 + MER41D LTR ERV1 1 77 -480 757 153 15 0 chr12 6656706 6656837 -137625652 - FLAM_C SINE Alu 0 133 1 2659 180 8 95 chr12 6656837 6657375 -137625114 + MER41D LTR ERV1 77 557 0 536 182 65 140 chr12 6657384 6657524 -137624965 + MER97c DNA MER1_type? 468 588 -502 1702 118 0 0 chr12 6657524 6657752 -137624737 + AluSx SINE Alu 1 228 -84 536 182 65 140 chr12 6657752 6657825 -137624664 + MER97c DNA MER1_type? 588 665 -425 337 123 62 31 chr12 6657840 6657903 -137624586 + MER97a DNA MER1_type? 801 865 -29 391 162 15 0 chr12 6657903 6657971 -137624518 + AluS SINE Alu 1 69 -234 2030 70 46 0 chr12 6658151 6658436 -137624053 + L1PB1 LINE L1 5851 6148 -3 500 267 222 22 chr12 6658454 6658814 -137623675 + Charlie2b DNA MER1_type 312 743 -2039 1083 229 84 74 chr12 6658868 6658904 -137623585 + Charlie2b DNA MER1_type 833 867 -1915 2234 98 3 7 chr12 6658904 6659200 -137623289 + AluSg SINE Alu 1 295 -15 1083 229 84 74 chr12 6659200 6659365 -137623124 + Charlie2b DNA MER1_type 867 1029 -1753 2002 122 17 7 chr12 6659365 6659661 -137622828 - AluJb SINE Alu -8 304 6 1083 229 84 74 chr12 6659661 6659864 -137622625 + Charlie2b DNA MER1_type 1029 1242 -1540 698 241 89 21 chr12 6659953 6660144 -137622345 - MIR SINE MIR -25 237 34 1475 153 0 5 chr12 6660290 6660505 -137621984 + AluJb SINE Alu 85 298 -14 189 0 0 0 chr12 6660506 6660527 -137621962 + (TA)n Simple_repeat Simple_repeat 2 22 0 292 258 97 8 chr12 6660564 6660688 -137621801 + L1MC4 LINE L1 7908 8042 0 2131 115 3 3 chr12 6660856 6661144 -137621345 - AluSx SINE Alu -15 297 10 749 255 36 15 chr12 6661355 6661551 -137620938 - LTR16A LTR ERVL -174 276 77 313 161 0 161 chr12 6661561 6661603 -137620886 - MIR SINE MIR -115 147 126 2134 151 0 0 chr12 6661603 6661915 -137620574 + AluSx SINE Alu 1 312 0 313 161 0 161 chr12 6661915 6661965 -137620524 - MIR SINE MIR -136 126 70 966 258 141 21 chr12 6661990 6662374 -137620115 - MLT1H LTR MaLR -13 536 107 2341 102 0 13 chr12 6662889 6663204 -137619285 - AluY SINE Alu 0 311 1 718 287 61 4 chr12 6663815 6664045 -137618444 + MIR SINE MIR 5 247 -15 1794 156 7 7 chr12 6664054 6664342 -137618147 + AluJo SINE Alu 1 288 -24 198 0 0 0 chr12 6664342 6664364 -137618125 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2430 87 0 10 chr12 6664678 6664989 -137617500 + AluSc SINE Alu 1 308 -1 280 292 21 0 chr12 6665021 6665117 -137617372 + L2 LINE L2 2962 3059 -213 1051 157 0 0 chr12 6665236 6665395 -137617094 + AluJb SINE Alu 140 298 -14 346 267 103 0 chr12 6665636 6665752 -137616737 - MER117 DNA MER1_type -39 158 31 182 335 112 20 chr12 6666184 6666336 -137616153 - L2 LINE L2 -190 3082 2917 575 281 58 54 chr12 6666534 6666847 -137615642 + L2 LINE L2 2914 3227 -45 504 0 0 0 chr12 6668049 6668105 -137614384 + (CA)n Simple_repeat Simple_repeat 1 56 0 468 192 0 0 chr12 6668774 6668852 -137613637 + FLAM SINE Alu 41 118 -25 30 27 0 0 chr12 6668857 6668894 -137613595 + AT_rich Low_complexity Low_complexity 1 37 0 2347 93 0 0 chr12 6668952 6669262 -137613227 - AluSg SINE Alu 0 310 1 22 35 0 0 chr12 6669657 6669686 -137612803 + GC_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr12 6670139 6670175 -137612314 + GC_rich Low_complexity Low_complexity 1 36 0 463 264 55 60 chr12 6670778 6670979 -137611510 - MER58 DNA MER1_type -107 234 35 2309 88 0 13 chr12 6673492 6673799 -137608690 + AluSq SINE Alu 1 303 -10 189 178 0 0 chr12 6674161 6674206 -137608283 + (CA)n Simple_repeat Simple_repeat 2 46 0 663 226 43 33 chr12 6674525 6674736 -137607753 + MIR SINE MIR 3 217 -45 2145 113 14 0 chr12 6678445 6678738 -137603751 + AluSx SINE Alu 9 305 -7 512 357 57 37 chr12 6678982 6679538 -137602951 - L2 LINE L2 -2 3270 2712 1319 218 40 58 chr12 6679588 6680034 -137602455 - MLT1C LTR MaLR -29 438 1 1860 168 0 7 chr12 6680290 6680587 -137601902 - AluJo SINE Alu -11 301 7 2350 34 41 3 chr12 6680828 6681119 -137601370 + AluY SINE Alu 1 302 -9 491 284 0 15 chr12 6681167 6681307 -137601182 + MIR SINE MIR 36 171 -67 1825 163 0 7 chr12 6681868 6682175 -137600314 + AluJo SINE Alu 1 305 -7 209 317 0 0 chr12 6683503 6683585 -137598904 + C-rich Low_complexity Low_complexity 1 82 0 213 39 0 0 chr12 6684438 6684464 -137598025 + (CCCCCT)n Simple_repeat Simple_repeat 3 28 0 491 247 29 12 chr12 6684531 6684717 -137597772 + MIR SINE MIR 30 216 -46 552 241 36 100 chr12 6685149 6685296 -137597193 + MIR SINE MIR 55 185 -77 2160 117 0 0 chr12 6685296 6685604 -137596885 + AluSg SINE Alu 1 308 -2 552 241 36 100 chr12 6685604 6685676 -137596813 + MIR SINE MIR 185 260 -2 218 404 94 9 chr12 6686266 6686479 -137596010 - L2 LINE L2 -7 3265 3035 1325 132 147 16 chr12 6687644 6687902 -137594587 + AluJo SINE Alu 1 292 -10 226 0 29 29 chr12 6688207 6688242 -137594247 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr12 6688598 6688627 -137593862 + GC_rich Low_complexity Low_complexity 1 29 0 254 333 0 10 chr12 6689214 6689310 -137593179 + (CTGGGG)n Simple_repeat Simple_repeat 1 95 0 182 114 0 29 chr12 6690034 6690069 -137592420 + (TGGA)n Simple_repeat Simple_repeat 2 35 0 317 287 118 47 chr12 6690402 6690594 -137591895 + MIR SINE MIR 11 216 -46 195 327 39 29 chr12 6690614 6690718 -137591771 - MIR SINE MIR -103 159 55 2294 92 16 0 chr12 6690997 6691301 -137591188 + AluSg SINE Alu 1 309 -1 421 282 72 67 chr12 6691322 6691430 -137591059 - MIR SINE MIR -32 230 119 1985 129 23 13 chr12 6691430 6691739 -137590750 + AluJo SINE Alu 1 312 0 421 282 72 67 chr12 6691739 6691839 -137590650 - MIR SINE MIR -143 119 21 481 299 85 6 chr12 6691912 6692076 -137590413 - MER104 DNA MER2_type 0 180 4 189 299 22 103 chr12 6693691 6693782 -137588707 + L2 LINE L2 3138 3208 -105 1644 167 25 7 chr12 6693782 6694058 -137588431 - AluJb SINE Alu -18 294 14 189 299 22 103 chr12 6694058 6694150 -137588339 + L2 LINE L2 3208 3306 -7 323 268 45 0 chr12 6694215 6694327 -137588162 + L1ME3A LINE L1 6049 6165 -5 214 333 103 0 chr12 6695242 6695329 -137587160 + L3b LINE CR1 1300 1395 -188 1685 116 0 144 chr12 6697851 6698197 -137584292 - AluJo SINE Alu -12 300 5 342 348 78 15 chr12 6698601 6698871 -137583618 - L2 LINE L2 -1 3271 2985 188 231 0 108 chr12 6698997 6699062 -137583427 + L2 LINE L2 3190 3247 -66 234 0 0 0 chr12 6699088 6699114 -137583375 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 315 0 0 0 chr12 6699113 6699148 -137583341 + (CA)n Simple_repeat Simple_repeat 1 35 0 361 230 130 20 chr12 6699422 6699522 -137582967 + L2 LINE L2 3143 3253 -19 492 328 18 23 chr12 6699526 6699697 -137582792 - MIR SINE MIR -49 213 44 329 306 65 102 chr12 6701571 6701816 -137580673 + MIR SINE MIR 10 245 -17 282 244 89 89 chr12 6702020 6702155 -137580334 + MIR SINE MIR 58 192 -70 1941 147 17 0 chr12 6702313 6702612 -137579877 - AluJb SINE Alu -4 308 5 256 246 179 45 chr12 6702614 6702748 -137579741 - MIR3 SINE MIR -55 153 2 384 326 59 0 chr12 6703313 6703448 -137579041 + MIR SINE MIR 118 260 -2 849 209 37 0 chr12 6703449 6703612 -137578877 - AluJo SINE Alu -20 292 124 2246 83 3 0 chr12 6703692 6703982 -137578507 + AluSg SINE Alu 1 291 -19 2172 100 10 0 chr12 6703999 6704290 -137578199 - AluSq SINE Alu -19 294 1 180 0 0 0 chr12 6704707 6704727 -137577762 + (CA)n Simple_repeat Simple_repeat 1 20 0 216 275 0 38 chr12 6704728 6704808 -137577681 + MIR3 SINE MIR 12 88 -120 511 316 26 94 chr12 6706113 6706496 -137575993 - L2 LINE L2 0 3272 2916 214 285 15 66 chr12 6707202 6707339 -137575150 + G-rich Low_complexity Low_complexity 4 133 0 713 184 0 63 chr12 6708861 6709007 -137573482 + FRAM SINE Alu 1 30 -146 2308 72 0 0 chr12 6709007 6709297 -137573192 - AluY SINE Alu -21 290 1 713 184 0 63 chr12 6709297 6709308 -137573181 + FRAM SINE Alu 30 40 0 3092 161 20 81 chr12 6709308 6709422 -137573067 + L1MB8 LINE L1 5288 5407 -771 2655 26 0 7 chr12 6709422 6709731 -137572758 + AluY SINE Alu 1 307 -4 3092 161 20 81 chr12 6709731 6709826 -137572663 + L1MB8 LINE L1 5407 5506 -672 2075 124 3 10 chr12 6709826 6710170 -137572319 + AluSx SINE Alu 1 312 0 3092 161 20 81 chr12 6710170 6710613 -137571876 + L1MB8 LINE L1 5506 5975 -203 2129 107 7 16 chr12 6710613 6710921 -137571568 + AluSx SINE Alu 1 305 -7 3092 161 20 81 chr12 6710921 6711030 -137571459 + L1MB8 LINE L1 5975 5980 -198 1827 158 31 0 chr12 6711030 6711322 -137571167 - AluJb SINE Alu -11 301 1 3092 161 20 81 chr12 6711322 6711510 -137570979 + L1MB8 LINE L1 5980 6178 0 386 342 33 0 chr12 6711879 6711999 -137570490 + MIR3 SINE MIR 82 205 -3 371 247 62 37 chr12 6712469 6712631 -137569858 - Charlie7 DNA MER1_type -7 2605 2440 2416 62 7 0 chr12 6712851 6713160 -137569329 - AluY SINE Alu 0 311 1 2043 82 0 4 chr12 6713260 6713529 -137568960 + AluY SINE Alu 41 308 -3 556 269 69 0 chr12 6715280 6715440 -137567049 - MIR SINE MIR -14 248 78 226 316 30 98 chr12 6715575 6715708 -137566781 + L2 LINE L2 3143 3266 -6 315 0 0 0 chr12 6715709 6715744 -137566745 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 194 243 50 19 chr12 6716170 6716273 -137566216 + MIR3 SINE MIR 77 164 -44 1954 114 70 0 chr12 6716567 6716838 -137565651 + AluSq SINE Alu 5 294 -19 776 202 88 80 chr12 6716955 6716987 -137565502 + MIR SINE MIR 2 32 -230 2278 104 3 3 chr12 6716987 6717285 -137565204 + AluSq SINE Alu 1 298 -15 776 202 88 80 chr12 6717285 6717490 -137564999 + MIR SINE MIR 32 241 -21 3689 149 25 26 chr12 6717518 6717848 -137564641 + L1MB7 LINE L1 5454 5783 -401 2172 129 0 3 chr12 6717848 6718151 -137564338 + AluJo SINE Alu 1 302 -10 3689 149 25 26 chr12 6718151 6718552 -137563937 + L1MB7 LINE L1 5783 6184 0 2040 134 94 42 chr12 6718673 6719036 -137563453 + MSTB LTR MaLR 2 390 -36 2442 99 0 0 chr12 6719036 6719340 -137563149 - AluSx SINE Alu -6 306 3 2040 134 94 42 chr12 6719340 6719380 -137563109 + MSTB LTR MaLR 390 426 0 390 286 21 36 chr12 6720329 6720469 -137562020 + L2 LINE L2 3176 3313 0 342 360 36 7 chr12 6720493 6720632 -137561857 - MIR3 SINE MIR -65 143 1 2272 88 10 19 chr12 6720729 6721036 -137561453 + AluSp SINE Alu 1 304 -9 213 225 338 0 chr12 6721803 6721883 -137560606 - MIR SINE MIR -59 149 43 1908 146 10 20 chr12 6721952 6722254 -137560235 - AluJb SINE Alu -13 299 1 213 39 0 0 chr12 6722407 6722433 -137560056 + (TAA)n Simple_repeat Simple_repeat 2 27 0 26 74 0 0 chr12 6722656 6722710 -137559779 + GC_rich Low_complexity Low_complexity 1 54 0 186 274 39 0 chr12 6723500 6723551 -137558938 - MER5B DNA MER1_type -68 110 58 2517 53 0 23 chr12 6723745 6724048 -137558441 + AluY SINE Alu 1 296 -15 1852 246 58 25 chr12 6724071 6724298 -137558191 + L1ME3 LINE L1 4316 4534 -1612 1909 129 24 14 chr12 6724298 6724592 -137557897 - AluJb SINE Alu -15 297 1 1852 246 58 25 chr12 6724592 6725073 -137557416 + L1ME3 LINE L1 4534 5096 -1050 2313 60 28 0 chr12 6725141 6725425 -137557064 - AluY SINE Alu -19 292 1 1164 148 59 51 chr12 6725454 6725710 -137556779 + L1ME3 LINE L1 5524 5781 -403 355 222 0 44 chr12 6725753 6725790 -137556699 + L1M3 LINE L1 5648 5685 -486 2470 80 3 0 chr12 6725790 6726092 -137556397 + AluSp SINE Alu 1 303 -10 355 222 0 44 chr12 6726092 6726170 -137556319 + L1M3 LINE L1 5685 5758 -413 2037 158 3 0 chr12 6726229 6726526 -137555963 + AluJb SINE Alu 2 299 -13 271 170 0 0 chr12 6726530 6726577 -137555912 - MIR SINE MIR 0 262 216 549 141 10 10 chr12 6726602 6726701 -137555788 - MER57A LTR ERV1 0 403 305 735 210 204 41 chr12 6726703 6727017 -137555472 + L1ME3 LINE L1 5798 6162 0 373 246 45 18 chr12 6727017 6727127 -137555362 - MER5B DNA MER1_type -49 129 17 410 214 74 107 chr12 6727334 6727402 -137555087 - MIR SINE MIR -4 258 189 2012 181 2 19 chr12 6727402 6727812 -137554677 - MER57A LTR ERV1 0 403 1 410 214 74 107 chr12 6727812 6727958 -137554531 - MIR SINE MIR -73 189 51 476 237 17 58 chr12 6728061 6728217 -137554272 + MIR SINE MIR 46 199 -48 245 266 49 0 chr12 6728509 6728652 -137553837 + (CCTG)n Simple_repeat Simple_repeat 1 150 0 2525 66 0 7 chr12 6728822 6729127 -137553362 + AluY SINE Alu 1 303 -8 582 275 41 0 chr12 6729410 6729581 -137552908 - MIR SINE MIR -75 187 10 308 93 0 19 chr12 6730804 6730858 -137551631 + (TGGGGG)n Simple_repeat Simple_repeat 2 54 0 589 266 7 0 chr12 6730864 6731007 -137551482 + MIR SINE MIR 53 196 -66 1721 108 21 4 chr12 6731068 6731309 -137551180 - AluSx SINE Alu -7 305 61 399 127 0 6 chr12 6731358 6731430 -137551059 - AluSx SINE Alu -245 57 2 379 280 47 27 chr12 6731445 6731595 -137550894 + MIR SINE MIR 82 234 -28 447 216 120 0 chr12 6732177 6732302 -137550187 + MIR SINE MIR 56 195 -67 186 224 0 0 chr12 6733348 6733397 -137549092 + G-rich Low_complexity Low_complexity 5 53 0 279 295 16 23 chr12 6734465 6734594 -137547895 + CT-rich Low_complexity Low_complexity 4 131 0 253 310 110 14 chr12 6736285 6736430 -137546059 - L2 LINE L2 -173 3099 2941 246 359 35 14 chr12 6736572 6736714 -137545775 - MIR3 SINE MIR -62 146 2 928 225 0 11 chr12 6737547 6737738 -137544751 - AluJo SINE Alu -1 311 123 288 246 0 14 chr12 6737741 6737810 -137544679 + MIR SINE MIR 82 149 -59 408 261 37 22 chr12 6737869 6738003 -137544486 - MIR3 SINE MIR -54 154 19 22 0 0 0 chr12 6738360 6738382 -137544107 + AT_rich Low_complexity Low_complexity 1 22 0 256 0 0 0 chr12 6738418 6738448 -137544041 - MER11C LTR ERVK -1041 30 1 2407 86 0 13 chr12 6738919 6739234 -137543255 + AluY SINE Alu 1 311 0 969 176 32 68 chr12 6739276 6739497 -137542992 - MER20 DNA MER1_type 0 219 7 2146 125 0 28 chr12 6739669 6739988 -137542501 + AluSx SINE Alu 1 310 -2 719 264 103 35 chr12 6740322 6740670 -137541819 - LTR33A LTR ERVL -12 511 140 349 282 10 87 chr12 6740884 6740963 -137541526 + L1ME3 LINE L1 5973 6057 -105 2244 126 3 0 chr12 6740963 6741272 -137541217 + AluSg SINE Alu 1 310 0 349 282 10 87 chr12 6741272 6741398 -137541091 + L1ME3 LINE L1 6057 6162 0 519 208 51 97 chr12 6741452 6741668 -137540821 + L1MC5 LINE L1 7697 7902 -59 364 309 87 0 chr12 6742251 6742377 -137540112 - L2 LINE L2 0 3272 3136 180 303 79 0 chr12 6742636 6742712 -137539777 + MIR3 SINE MIR 106 187 -21 2718 30 3 0 chr12 6744895 6745193 -137537296 + AluY SINE Alu 1 299 -12 288 0 0 0 chr12 6745875 6745907 -137536582 + (CA)n Simple_repeat Simple_repeat 2 33 0 713 308 5 19 chr12 6746209 6746420 -137536069 - MIR SINE MIR -30 232 25 363 273 121 9 chr12 6746423 6746654 -137535835 - L1ME4a LINE L1 -21 6100 5844 406 246 204 0 chr12 6746690 6746832 -137535657 - MIR3 SINE MIR -18 190 20 1265 218 102 14 chr12 6748195 6748557 -137533932 - L2 LINE L2 0 3313 2920 271 194 0 60 chr12 6748631 6748698 -137533791 + AluJo SINE Alu 85 147 -155 2247 93 0 4 chr12 6748813 6749093 -137533396 + AluSx SINE Alu 24 302 -10 879 168 0 13 chr12 6749104 6749253 -137533236 + FRAM SINE Alu 26 172 -4 331 171 26 0 chr12 6749253 6749329 -137533160 + GA-rich Low_complexity Low_complexity 1 78 0 839 212 88 14 chr12 6750967 6751184 -137531305 - MIR SINE MIR -2 260 28 1901 153 3 10 chr12 6751379 6751680 -137530809 - AluJo SINE Alu -13 299 1 1723 175 7 20 chr12 6752370 6752662 -137529827 - AluJo SINE Alu -22 290 3 1938 169 54 16 chr12 6752671 6753044 -137529445 - MLT1B LTR MaLR -3 387 1 804 310 40 23 chr12 6753429 6753826 -137528663 + L1M3b LINE L1 1 404 -5877 498 317 50 19 chr12 6754107 6754366 -137528123 + MLT1L LTR MaLR 322 588 -27 893 197 0 0 chr12 6754651 6754803 -137527686 + MER44D DNA MER2_type 13 164 -541 815 211 45 34 chr12 6755141 6755480 -137527009 + LTR35 LTR ERV1 198 618 0 1751 162 17 5 chr12 6755480 6755996 -137526493 + MER44D DNA MER2_type 160 605 0 1042 261 53 78 chr12 6756014 6756342 -137526147 - L1MC4a LINE L1 -1913 5895 5560 2547 58 0 3 chr12 6756342 6756637 -137525852 - AluY SINE Alu -17 294 1 1042 261 53 78 chr12 6756637 6756891 -137525598 - L1MC4a LINE L1 -2248 5560 5326 1968 135 37 7 chr12 6756891 6757187 -137525302 - AluJb SINE Alu -7 305 1 1042 261 53 78 chr12 6757187 6757208 -137525281 - L1MC4a LINE L1 -2482 5326 5306 260 303 103 44 chr12 6757304 6757588 -137524901 - L1MC4a LINE L1 -1307 4839 4516 2487 92 0 0 chr12 6757588 6757892 -137524597 - AluSx SINE Alu -8 304 1 260 303 103 44 chr12 6757892 6758063 -137524426 - L1MC4a LINE L1 -1630 4516 4357 2551 77 0 0 chr12 6758115 6758426 -137524063 - AluY SINE Alu 0 311 1 877 164 0 14 chr12 6758474 6758614 -137523875 - AluJo SINE Alu -174 138 1 906 150 0 14 chr12 6758662 6758802 -137523687 - AluJo SINE Alu -174 138 1 927 143 0 14 chr12 6758850 6758990 -137523499 - AluJo SINE Alu -174 138 1 279 320 74 0 chr12 6758994 6759116 -137523373 - L1MC4a LINE L1 -1982 4164 4034 198 284 15 0 chr12 6759245 6759312 -137523177 - L2 LINE L2 -747 2567 2500 290 339 41 39 chr12 6759556 6759838 -137522651 - L2 LINE L2 -205 3067 2736 315 226 16 0 chr12 6759854 6759916 -137522573 + L1MC4 LINE L1 6640 6702 -1340 202 158 0 26 chr12 6759918 6759956 -137522533 + (TA)n Simple_repeat Simple_repeat 2 38 0 261 0 0 0 chr12 6759961 6759990 -137522499 + (TG)n Simple_repeat Simple_repeat 2 30 0 2089 111 39 0 chr12 6759997 6760277 -137522212 - AluSx SINE Alu -21 291 1 449 256 47 0 chr12 6760288 6760417 -137522072 - L1ME3 LINE L1 -30 6132 5998 2100 137 13 0 chr12 6760516 6760816 -137521673 - AluSq SINE Alu -9 304 1 1661 129 47 35 chr12 6760829 6761147 -137521342 - L1MD3 LINE L1 0 7995 7674 1477 177 15 11 chr12 6761147 6761413 -137521076 + AluJb SINE Alu 46 312 0 676 129 39 25 chr12 6761416 6761548 -137520941 - L1ME3 LINE L1 -568 5594 5455 2055 79 0 0 chr12 6761726 6761978 -137520511 - AluY SINE Alu 0 311 60 2499 224 76 19 chr12 6762195 6762390 -137520099 - L1MC/D LINE L1 -743 6198 6016 2202 125 0 22 chr12 6762390 6762526 -137519963 + AluSx SINE Alu 1 138 -174 2417 86 3 10 chr12 6762526 6762840 -137519649 + AluSp SINE Alu 1 312 -1 2202 125 0 22 chr12 6762840 6763022 -137519467 + AluSx SINE Alu 138 312 0 2499 224 76 19 chr12 6763022 6763773 -137518716 - L1MC/D LINE L1 -925 6016 5291 1720 170 6 45 chr12 6763777 6764088 -137518401 - AluJo SINE Alu -13 299 1 302 282 75 65 chr12 6764241 6764642 -137517847 - L1MC5 LINE L1 -62 7899 7495 284 261 76 0 chr12 6764641 6764760 -137517729 - L1MC5 LINE L1 -1201 6760 6633 * 2441 80 0 0 chr12 6764777 6765078 -137517411 - AluSx SINE Alu -11 301 1 453 298 98 30 chr12 6765689 6765924 -137516565 - ERVL LTR ERVL -1154 4610 4360 635 301 58 55 chr12 6765952 6766065 -137516424 - ERVL LTR ERVL -1496 4268 4157 2396 92 0 0 chr12 6766065 6766359 -137516130 - AluSx SINE Alu -12 300 7 635 301 58 55 chr12 6766359 6766740 -137515749 - ERVL LTR ERVL -1607 4157 3772 299 261 225 0 chr12 6766810 6766921 -137515568 - MIR SINE MIR 0 262 127 2189 122 13 0 chr12 6767009 6767351 -137515138 - AluSx SINE Alu 0 312 1 404 238 29 0 chr12 6767359 6767464 -137515025 - L1MC/D LINE L1 -1662 5279 5172 869 201 68 93 chr12 6767484 6767516 -137514973 - L1MCb LINE L1 -4620 2502 2471 2112 105 40 7 chr12 6767516 6767812 -137514677 - AluSq SINE Alu -7 306 1 869 201 68 93 chr12 6767812 6767910 -137514579 - L1MCb LINE L1 -4651 2471 2372 845 165 0 0 chr12 6767910 6768043 -137514446 + FLAM_C SINE Alu 1 133 0 869 201 68 93 chr12 6768043 6768064 -137514425 - L1MCb LINE L1 -4750 2372 2352 2092 107 71 0 chr12 6768064 6768344 -137514145 + AluSx SINE Alu 1 300 -12 869 201 68 93 chr12 6768344 6768654 -137513835 - L1MCb LINE L1 -4770 2352 2036 186 43 0 0 chr12 6768654 6768677 -137513812 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 869 201 68 93 chr12 6768677 6768817 -137513672 - L1MCb LINE L1 -5086 2036 1681 1083 217 103 75 chr12 6769309 6769581 -137512908 - L1MCb LINE L1 -4852 1570 1307 2033 133 13 32 chr12 6769581 6769897 -137512592 - AluSg SINE Alu 0 310 1 1083 217 103 75 chr12 6769897 6770387 -137512102 - L1MCb LINE L1 -5115 1307 814 2133 124 17 0 chr12 6770507 6770805 -137511684 - AluSx SINE Alu -9 303 1 350 210 48 29 chr12 6771122 6771270 -137511219 - L1MCb LINE L1 -5890 532 52 1702 93 4 9 chr12 6771340 6771565 -137510924 - AluSg/x SINE Alu -16 296 73 1407 213 39 58 chr12 6771565 6771810 -137510679 - L1MCa LINE L1 -1453 4973 4738 2195 119 0 0 chr12 6771810 6772104 -137510385 - AluSx SINE Alu -14 298 5 1407 213 39 58 chr12 6772104 6772290 -137510199 - L1MCa LINE L1 -1688 4738 4550 2035 125 0 7 chr12 6772290 6772579 -137509910 + AluSx SINE Alu 1 287 -25 5215 199 51 38 chr12 6772587 6772932 -137509557 - L1MCa LINE L1 -2438 3988 3649 2242 110 3 3 chr12 6772932 6773233 -137509256 - AluSq SINE Alu -12 301 1 5215 199 51 38 chr12 6773233 6774283 -137508206 - L1MCa LINE L1 -2777 3649 2556 2371 110 0 3 chr12 6774283 6774593 -137507896 - AluSg SINE Alu -1 309 1 5215 199 51 38 chr12 6774593 6775221 -137507268 - L1MCa LINE L1 -3870 2556 1937 1049 105 0 0 chr12 6775221 6775354 -137507135 + AluSq/x SINE Alu 1 133 -179 2075 157 0 3 chr12 6775366 6775679 -137506810 + AluSx SINE Alu 1 312 0 238 364 178 0 chr12 6775778 6775896 -137506593 - L2 LINE L2 0 3272 3134 425 347 113 24 chr12 6775988 6776490 -137505999 + L2 LINE L2 863 1409 -1905 401 167 3 0 chr12 6776504 6776588 -137505901 + L1ME2 LINE L1 5459 5543 -619 2891 148 60 21 chr12 6776592 6777126 -137505363 - MER21A LTR ERV1 0 931 377 1387 107 95 8 chr12 6777132 6777375 -137505114 - MER21A LTR ERV1 -667 264 1 1563 168 35 17 chr12 6777378 6777723 -137504766 + L1ME2 LINE L1 5546 5896 -268 1905 129 9 44 chr12 6777731 6778048 -137504441 + AluSq SINE Alu 1 306 -7 618 168 44 0 chr12 6778054 6778167 -137504322 - L1ME LINE L1 -421 5700 5583 221 333 55 36 chr12 6778268 6778433 -137504056 + L2 LINE L2 3105 3272 -41 299 233 23 33 chr12 6778685 6778824 -137503665 - MER91 DNA MER1_type -7 189 8 193 345 18 35 chr12 6778842 6778955 -137503534 + L2 LINE L2 2981 3091 -181 1904 141 17 7 chr12 6779011 6779308 -137503181 + AluJb SINE Alu 1 300 -12 2542 68 7 0 chr12 6779376 6779684 -137502805 - AluSg SINE Alu 0 310 1 215 250 39 0 chr12 6779704 6779756 -137502733 + L2 LINE L2 3258 3311 -2 240 326 45 11 chr12 6779760 6779849 -137502640 + MIR3 SINE MIR 102 193 -15 2227 104 0 3 chr12 6780528 6780847 -137501642 - AluSx SINE Alu 0 312 1 258 32 0 0 chr12 6780859 6780890 -137501599 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1359 121 0 0 chr12 6780890 6781072 -137501417 - AluSg/x SINE Alu -2 310 129 2445 82 26 0 chr12 6781072 6781376 -137501113 - AluSx SINE Alu 0 312 1 683 162 8 17 chr12 6781403 6781520 -137500969 + AluJo/FLAM SINE Alu 3 118 -194 2171 105 3 14 chr12 6781520 6781842 -137500647 - AluSg SINE Alu 0 310 1 2471 93 0 3 chr12 6781895 6782205 -137500284 - AluSc SINE Alu 0 309 1 3159 117 7 7 chr12 6782436 6782899 -137499590 - L1PB4 LINE L1 0 6156 5694 25 0 0 0 chr12 6783668 6783693 -137498796 + AT_rich Low_complexity Low_complexity 1 25 0 342 236 55 29 chr12 6783956 6784109 -137498380 + MLT2E LTR ERVL 1 154 -474 592 273 47 13 chr12 6784128 6784523 -137497966 + MLT2F LTR ERVL 213 661 -2 25 0 0 0 chr12 6784671 6784696 -137497793 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 6784729 6784760 -137497729 + AT_rich Low_complexity Low_complexity 1 31 0 2040 148 0 3 chr12 6784760 6785065 -137497424 + AluJb SINE Alu 2 305 -7 1728 146 0 43 chr12 6785741 6786022 -137496467 + AluSx SINE Alu 1 269 -43 186 0 88 0 chr12 6786059 6786093 -137496396 + A-rich Low_complexity Low_complexity 2 38 0 1959 137 16 22 chr12 6786528 6786842 -137495647 + AluJb SINE Alu 1 312 0 4081 181 27 45 chr12 6786846 6786867 -137495622 + L1MB7 LINE L1 4357 4377 -1803 2271 115 3 6 chr12 6786867 6787181 -137495308 + AluSq SINE Alu 1 313 0 4081 181 27 45 chr12 6787181 6787231 -137495258 + L1MB7 LINE L1 4377 4426 -1754 2227 123 0 3 chr12 6787231 6787532 -137494957 + AluSx SINE Alu 1 300 -12 4081 181 27 45 chr12 6787532 6788254 -137494235 + L1MB7 LINE L1 4426 5159 -1021 2500 51 7 0 chr12 6788254 6788549 -137493940 - AluY SINE Alu -14 297 1 4081 181 27 45 chr12 6788549 6788622 -137493867 + L1MB7 LINE L1 5159 5232 -948 2328 63 0 48 chr12 6788622 6788937 -137493552 - AluY SINE Alu -11 300 1 4081 181 27 45 chr12 6788937 6789222 -137493267 + L1MB7 LINE L1 5232 5488 -692 287 193 91 0 chr12 6789229 6789317 -137493172 + L1MB7 LINE L1 6073 6168 -16 725 323 88 23 chr12 6789754 6790323 -137492166 + L1MC4a LINE L1 5347 5952 -1856 1767 189 10 0 chr12 6790440 6790741 -137491748 + AluJo SINE Alu 1 304 -8 22 0 0 0 chr12 6791156 6791178 -137491311 + AT_rich Low_complexity Low_complexity 1 22 0 2260 104 0 0 chr12 6791184 6791497 -137490992 + AluSc SINE Alu 1 313 0 2240 134 3 0 chr12 6791497 6791804 -137490685 + AluSq SINE Alu 1 308 -5 1986 136 34 0 chr12 6791831 6792126 -137490363 + AluSx SINE Alu 8 312 0 338 130 91 26 chr12 6792523 6792600 -137489889 - L1ME3A LINE L1 -208 5962 5881 472 101 56 11 chr12 6792648 6792737 -137489752 - L1MB4 LINE L1 -1 6179 6087 335 244 16 32 chr12 6792738 6792861 -137489628 - L1ME3A LINE L1 -296 5874 5754 638 174 39 0 chr12 6792864 6793019 -137489470 + CT-rich Low_complexity Low_complexity 3 163 0 1697 138 0 0 chr12 6793020 6793260 -137489229 - AluSx SINE Alu -64 248 9 180 0 0 0 chr12 6793264 6793284 -137489205 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr12 6793435 6793464 -137489025 + AT_rich Low_complexity Low_complexity 1 29 0 378 175 184 19 chr12 6793661 6793764 -137488725 + MIR SINE MIR 31 150 -58 424 219 102 71 chr12 6793976 6794172 -137488317 + MER63A DNA MER1_type 2 203 -7 2005 118 0 70 chr12 6794418 6794557 -137487932 + AluJb SINE Alu 7 113 -199 2316 89 3 0 chr12 6794557 6794850 -137487639 + AluSp SINE Alu 2 295 -18 2005 118 0 70 chr12 6794850 6795025 -137487464 + AluJb SINE Alu 113 299 -13 2369 103 3 0 chr12 6795047 6795348 -137487141 + AluSx SINE Alu 1 302 -10 264 372 92 9 chr12 6795601 6795819 -137486670 - MIR SINE MIR -6 256 21 1567 114 72 50 chr12 6796159 6796445 -137486044 + AluJo SINE Alu 14 305 0 2522 71 0 3 chr12 6796447 6796757 -137485732 + AluY SINE Alu 1 309 -2 524 304 18 28 chr12 6796758 6796975 -137485514 + L1MEd LINE L1 473 687 -5432 709 126 10 0 chr12 6797047 6797150 -137485339 - FLAM_C SINE Alu -32 111 8 355 229 120 17 chr12 6797218 6797393 -137485096 + Charlie7 DNA MER1_type 2205 2397 -215 663 144 10 0 chr12 6797511 6797608 -137484881 - AluJ/FLAM SINE Alu -213 99 2 26 30 0 0 chr12 6797709 6797742 -137484747 + AT_rich Low_complexity Low_complexity 1 33 0 751 247 102 23 chr12 6798512 6798601 -137483888 + L1MEd LINE L1 2661 2742 -3387 1850 199 84 31 chr12 6798601 6799079 -137483410 - MLT1D LTR MaLR 0 505 3 751 247 102 23 chr12 6799079 6799381 -137483108 + L1MEd LINE L1 2742 3083 -3046 2101 131 7 0 chr12 6799382 6799680 -137482809 + AluSx SINE Alu 2 301 -11 21 0 0 0 chr12 6799759 6799780 -137482709 + AT_rich Low_complexity Low_complexity 1 21 0 1910 152 0 19 chr12 6800011 6800327 -137482162 - AluJo SINE Alu -2 310 1 390 316 19 52 chr12 6800348 6800503 -137481986 + L2 LINE L2 3121 3270 -2 2303 114 0 9 chr12 6801440 6801755 -137480734 + AluSx SINE Alu 1 312 0 981 132 0 0 chr12 6801972 6802108 -137480381 + AluSq/x SINE Alu 1 136 -177 1585 165 110 0 chr12 6802108 6802380 -137480109 + AluSg SINE Alu 1 302 -8 792 220 129 4 chr12 6803587 6803819 -137478670 + MER46C DNA MER2_type 78 338 0 877 232 0 0 chr12 6805570 6805734 -137476755 - FRAM SINE Alu -1 165 2 1275 156 66 80 chr12 6805763 6806046 -137476443 + AluJb SINE Alu 3 282 -26 216 0 0 0 chr12 6806046 6806070 -137476419 + (CA)n Simple_repeat Simple_repeat 1 24 0 1967 141 0 33 chr12 6806080 6806386 -137476103 + AluJb SINE Alu 9 304 -8 188 237 0 0 chr12 6806748 6806786 -137475703 + MIR SINE MIR 109 146 -62 216 0 0 0 chr12 6806889 6806913 -137475576 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1982 46 8 0 chr12 6806916 6807154 -137475335 - L1PA5 LINE L1 -13 6141 5902 2177 94 7 3 chr12 6807768 6808055 -137474434 + AluSg SINE Alu 16 303 -7 555 163 71 21 chr12 6808097 6808211 -137474278 - L1MB7 LINE L1 -78 6106 5999 213 39 0 0 chr12 6808211 6808237 -137474252 + (CCCCAG)n Simple_repeat Simple_repeat 3 28 0 555 163 71 21 chr12 6808237 6808255 -137474234 - L1MB7 LINE L1 -185 5999 5983 2135 138 0 3 chr12 6808255 6808566 -137473923 - AluJb SINE Alu -2 310 1 1018 91 0 0 chr12 6808573 6808705 -137473784 - AluSg/x SINE Alu 0 309 178 332 239 60 0 chr12 6808709 6808826 -137473663 + L1ME3A LINE L1 6043 6166 -4 2316 113 0 3 chr12 6808838 6809147 -137473342 + AluSq SINE Alu 1 308 -5 2358 101 10 0 chr12 6813005 6813312 -137469177 + AluSq SINE Alu 1 310 -3 2194 122 3 0 chr12 6813456 6813760 -137468729 + AluSx SINE Alu 1 305 -7 494 214 24 71 chr12 6814333 6814501 -137467988 - L1MC4 LINE L1 -16 8026 7867 613 229 13 38 chr12 6814653 6814810 -137467679 + MER97a DNA MER1_type? 27 179 -715 704 119 9 37 chr12 6814922 6815031 -137467458 + FLAM_A SINE Alu 4 109 -33 2265 107 10 0 chr12 6815033 6815324 -137467165 - AluSx SINE Alu -18 294 1 629 242 96 42 chr12 6815363 6815623 -137466866 - L1MC4 LINE L1 -313 7729 7456 2095 88 4 0 chr12 6815633 6815894 -137466595 - AluSp SINE Alu -13 300 39 2461 89 6 10 chr12 6815907 6816221 -137466268 - AluSq SINE Alu 0 313 1 246 224 0 0 chr12 6816294 6816343 -137466146 - MIR SINE MIR -157 105 57 336 222 70 105 chr12 6817339 6817374 -137465115 - MER97a DNA MER1_type? -727 167 132 2266 87 35 0 chr12 6817374 6817660 -137464829 + AluSg SINE Alu 1 296 -14 336 222 70 105 chr12 6817660 6817795 -137464694 - MER97a DNA MER1_type? -762 132 3 255 264 85 28 chr12 6818430 6818536 -137463953 - L2 LINE L2 -39 3233 3122 208 351 40 60 chr12 6818552 6818703 -137463786 - L2 LINE L2 -277 2995 2848 383 298 193 6 chr12 6818727 6818908 -137463581 - MIR SINE MIR -13 249 35 351 0 0 0 chr12 6818993 6819032 -137463457 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2200 123 3 0 chr12 6819034 6819334 -137463155 - AluSx SINE Alu -11 301 1 1997 136 0 4 chr12 6819514 6819829 -137462660 - AluSx SINE Alu 0 316 3 180 0 0 0 chr12 6824075 6824095 -137458394 + (CAGG)n Simple_repeat Simple_repeat 1 20 0 366 107 0 0 chr12 6824623 6824679 -137457810 + (TA)n Simple_repeat Simple_repeat 1 56 0 303 28 0 0 chr12 6824679 6824715 -137457774 + (TG)n Simple_repeat Simple_repeat 2 37 0 949 128 0 0 chr12 6825620 6825753 -137456736 + FLAM_A SINE Alu 1 133 0 2780 65 8 0 chr12 6826047 6826399 -137456090 + THE1A LTR MaLR 1 355 0 2889 48 0 3 chr12 6826399 6826770 -137455719 + THE1A-int LTR MaLR 1 370 -1210 4761 114 3 1 chr12 6826781 6827465 -137455024 + THE1A-int LTR MaLR 482 1166 -414 267 287 201 12 chr12 6830490 6830654 -137451835 + L2 LINE L2 2335 2529 -785 1390 185 61 37 chr12 6830708 6830764 -137451725 - HsTC2 DNA Tc2 -22 1876 1823 2269 97 7 3 chr12 6830764 6831062 -137451427 + AluSx SINE Alu 1 299 -13 1390 185 61 37 chr12 6831062 6831415 -137451074 - HsTC2 DNA Tc2 -75 1823 1281 188 260 0 52 chr12 6831566 6831643 -137450846 + L2 LINE L2 2641 2713 -601 999 169 5 31 chr12 6831786 6831966 -137450523 + AluJo SINE Alu 123 299 -13 2102 132 26 0 chr12 6831966 6832270 -137450219 + AluSx SINE Alu 1 312 0 999 169 5 31 chr12 6832270 6832284 -137450205 + AluJo SINE Alu 299 312 0 1910 143 0 28 chr12 6832385 6832672 -137449817 + AluJb SINE Alu 11 289 -23 2631 45 0 13 chr12 6832691 6832999 -137449490 - AluY SINE Alu -7 304 1 2578 174 73 90 chr12 6832999 6833780 -137448709 - L1MD2 LINE L1 -10 6349 5582 608 170 75 0 chr12 6833785 6833879 -137448610 - FLAM_A SINE Alu -41 101 1 605 181 39 19 chr12 6833885 6834040 -137448449 - L1MD2 LINE L1 -879 5480 5323 7445 42 3 200 chr12 6834040 6835410 -137447079 - SVA Other Other -4 1382 283 1281 103 6 0 chr12 6835410 6835575 -137446914 - AluSq SINE Alu -134 179 14 335 296 35 52 chr12 6835613 6835728 -137446761 - HAL1 LINE L1 -1230 1277 1165 513 317 27 0 chr12 6835728 6835914 -137446575 - L1MEd LINE L1 -5368 751 561 607 177 54 20 chr12 6836385 6836532 -137445957 + L1M4 LINE L1 4695 4846 -1300 2455 77 0 3 chr12 6836541 6836840 -137445649 - AluSc SINE Alu -11 298 1 26 0 0 0 chr12 6840123 6840149 -137442340 + AT_rich Low_complexity Low_complexity 1 26 0 2290 73 45 7 chr12 6840308 6840597 -137441892 - AluSg SINE Alu -10 300 1 21 36 0 0 chr12 6841026 6841054 -137441435 + AT_rich Low_complexity Low_complexity 1 28 0 2300 92 3 3 chr12 6841438 6841731 -137440758 + AluSg SINE Alu 1 293 -17 1634 202 14 10 chr12 6841881 6842178 -137440311 + AluJo SINE Alu 1 298 -14 729 110 39 58 chr12 6842187 6842320 -137440169 + L1MB5 LINE L1 5823 5954 -224 2095 114 3 24 chr12 6842320 6842617 -137439872 + AluSx SINE Alu 18 308 -4 729 110 39 58 chr12 6842617 6842637 -137439852 + L1MB5 LINE L1 5954 5973 -205 1671 148 0 0 chr12 6842638 6842868 -137439621 + AluSx SINE Alu 1 230 -82 329 219 79 53 chr12 6842910 6843024 -137439465 + L1MB5 LINE L1 5977 6093 -81 2227 106 0 7 chr12 6843037 6843329 -137439160 + AluSc SINE Alu 1 290 -19 1431 136 37 0 chr12 6843329 6843602 -137438887 + L1MA8 LINE L1 6009 6291 0 538 193 18 0 chr12 6843611 6843725 -137438764 + L1MB7 LINE L1 6050 6165 -19 183 80 0 0 chr12 6843902 6843927 -137438562 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 696 170 36 0 chr12 6843927 6844039 -137438450 - AluJb SINE Alu -195 117 2 310 267 0 116 chr12 6844040 6844108 -137438381 - HAL1 LINE L1 -139 2368 2294 1889 139 3 58 chr12 6844108 6844248 -137438241 - AluJb SINE Alu 0 312 166 2480 81 0 7 chr12 6844248 6844555 -137437934 - AluSg SINE Alu -5 305 1 1889 139 3 58 chr12 6844555 6844744 -137437745 - AluJb SINE Alu -146 166 1 2130 130 0 3 chr12 6844754 6845079 -137437410 - AluSx SINE Alu 0 324 1 310 267 0 116 chr12 6845079 6845144 -137437345 - HAL1 LINE L1 -223 2284 2240 * 477 327 99 5 chr12 6845143 6845345 -137437144 + L1 LINE L1 3893 4113 -2033 1462 80 9 38 chr12 6845345 6845521 -137436968 - AluSg/x SINE Alu -1 309 138 2183 91 0 18 chr12 6845521 6845834 -137436655 - AluSq SINE Alu 0 313 9 1462 80 9 38 chr12 6845834 6845870 -137436619 - AluSg/x SINE Alu -172 138 103 1675 128 6 106 chr12 6845922 6846251 -137436238 - AluJo SINE Alu -10 302 7 2341 97 0 0 chr12 6846348 6846647 -137435842 + AluY SINE Alu 1 299 -12 1615 116 16 0 chr12 6846653 6846903 -137435586 - L1M4 LINE L1 -382 5802 5549 2489 65 0 0 chr12 6846914 6847206 -137435283 - AluY SINE Alu -19 292 1 266 254 162 81 chr12 6847323 6847496 -137434993 + L2 LINE L2 2897 3083 -189 1994 156 0 22 chr12 6847593 6847908 -137434581 - AluSx SINE Alu -4 308 1 186 43 0 0 chr12 6847969 6847992 -137434497 + (A)n Simple_repeat Simple_repeat 1 23 0 799 293 52 40 chr12 6848093 6848229 -137434260 + HERV16 LTR ERVL 2404 2537 -2459 1992 150 3 16 chr12 6848229 6848543 -137433946 - AluJb SINE Alu -1 311 2 2310 102 10 0 chr12 6848551 6848855 -137433634 - AluSp SINE Alu -6 307 1 799 293 52 40 chr12 6848855 6849033 -137433456 + HERV16 LTR ERVL 2543 2731 -2265 2251 97 3 13 chr12 6849056 6849356 -137433133 - AluSg SINE Alu -4 306 10 1149 143 104 137 chr12 6849875 6850182 -137432307 - AluJo SINE Alu -5 297 1 1517 160 15 108 chr12 6850193 6850394 -137432095 - AluJo SINE Alu 0 302 143 2086 100 16 48 chr12 6850394 6850704 -137431785 - AluY SINE Alu -11 300 1 1517 160 15 108 chr12 6850704 6850834 -137431655 - AluJo SINE Alu -159 143 2 21 0 0 0 chr12 6850842 6850863 -137431626 + AT_rich Low_complexity Low_complexity 1 21 0 375 244 94 17 chr12 6851817 6851997 -137430492 + MIR SINE MIR 1 262 0 405 309 7 33 chr12 6852785 6852937 -137429552 - MIR SINE MIR -80 182 35 332 274 92 30 chr12 6853614 6853778 -137428711 + MIR SINE MIR 87 260 -2 634 164 141 16 chr12 6855038 6855166 -137427323 + MIR SINE MIR 9 152 -110 2323 114 0 7 chr12 6855282 6855589 -137426900 - AluSx SINE Alu -2 310 6 1791 164 0 23 chr12 6855640 6855939 -137426550 - AluJb SINE Alu 0 312 21 689 179 0 0 chr12 6855939 6856045 -137426444 - AluJb SINE Alu -59 253 148 234 179 0 0 chr12 6856045 6856084 -137426405 - AluJb SINE Alu -262 39 1 465 101 25 25 chr12 6856084 6856163 -137426326 - Tigger3(Golem) DNA MER2_type -673 2356 2278 * 507 219 29 0 chr12 6856154 6856259 -137426230 - Tigger3(Golem) DNA MER2_type -2921 108 1 2086 93 100 3 chr12 6856535 6856846 -137425643 - L1PA10 LINE L1 -10 6158 5818 2320 97 3 0 chr12 6856851 6857151 -137425338 - AluSg SINE Alu -9 301 1 1674 145 86 21 chr12 6857153 6857443 -137425046 - AluJb SINE Alu -3 309 1 496 250 103 51 chr12 6857534 6857690 -137424799 - L2 LINE L2 -1 3312 3149 2328 147 47 33 chr12 6857693 6857847 -137424642 - MER44D DNA MER2_type -1892 595 445 2219 89 10 3 chr12 6857847 6858138 -137424351 - AluSc SINE Alu -16 293 1 2328 147 47 33 chr12 6858138 6858433 -137424056 - MER44D DNA MER2_type -2042 445 85 1143 173 0 5 chr12 6858434 6858619 -137423870 - AluJb SINE Alu -1 311 128 2105 126 0 13 chr12 6858624 6858926 -137423563 - AluSx SINE Alu -14 298 1 507 194 0 10 chr12 6858926 6859024 -137423465 - MER44D DNA MER2_type -608 97 1 2923 229 182 123 chr12 6859024 6859073 -137423416 - L2 LINE L2 -163 3150 3105 2019 149 3 7 chr12 6859073 6859375 -137423114 + AluJb SINE Alu 1 301 -11 530 181 133 0 chr12 6859380 6859485 -137423004 + FLAM_A SINE Alu 2 120 -13 2923 229 182 123 chr12 6859485 6859767 -137422722 - L2 LINE L2 -211 3102 2838 518 216 116 88 chr12 6859767 6859948 -137422541 + MER5A DNA MER1_type 4 189 0 2923 229 182 123 chr12 6859948 6860291 -137422198 - L2 LINE L2 -475 2838 2517 1068 116 23 52 chr12 6860291 6860463 -137422026 - AluSg/x SINE Alu -13 299 133 1484 116 209 8 chr12 6860463 6860722 -137421767 - AluY SINE Alu 0 311 1 2923 229 182 123 chr12 6860722 6861816 -137420673 - L2 LINE L2 -795 2518 1095 1021 133 20 0 chr12 6861903 6862054 -137420435 + FRAM SINE Alu 1 154 -22 2039 95 24 44 chr12 6862067 6862389 -137420100 - AluSg SINE Alu 0 316 1 1106 258 52 27 chr12 6862509 6862724 -137419765 - MSTD LTR MaLR -15 381 173 2359 71 0 4 chr12 6862724 6863004 -137419485 + AluSg SINE Alu 1 279 -31 1106 258 52 27 chr12 6863004 6863025 -137419464 - MSTD LTR MaLR -223 173 154 1488 94 0 5 chr12 6863025 6863217 -137419272 + AluSg/x SINE Alu 94 284 -25 1106 258 52 27 chr12 6863217 6863348 -137419141 - MSTD LTR MaLR -242 154 4 570 41 0 0 chr12 6863405 6863478 -137419011 + (TA)n Simple_repeat Simple_repeat 1 73 0 1123 159 56 24 chr12 6863481 6863622 -137418867 - Tigger2 DNA MER2_type -3 2715 2580 195 42 0 0 chr12 6863622 6863646 -137418843 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2027 133 4 0 chr12 6863647 6863926 -137418563 - AluSx SINE Alu -32 280 1 1123 159 56 24 chr12 6863926 6864033 -137418456 - Tigger2 DNA MER2_type -137 2581 2457 3080 131 8 82 chr12 6864076 6864307 -137418182 - Tigger2 DNA MER2_type -1974 744 497 2145 102 7 7 chr12 6864307 6864600 -137417889 - AluSq SINE Alu -20 293 1 3080 131 8 82 chr12 6864600 6864791 -137417698 - Tigger2 DNA MER2_type -2221 497 293 1805 153 6 80 chr12 6864791 6865117 -137417372 + AluSx SINE Alu 1 302 -10 3080 131 8 82 chr12 6865117 6865194 -137417295 - Tigger2 DNA MER2_type -2425 293 212 1793 191 10 0 chr12 6865194 6865492 -137416997 - AluJb SINE Alu -11 301 1 3080 131 8 82 chr12 6865492 6865540 -137416949 - Tigger2 DNA MER2_type -2506 212 245 2438 57 0 10 chr12 6865540 6865839 -137416650 + AluY SINE Alu 1 296 -15 3080 131 8 82 chr12 6865839 6865921 -137416568 - Tigger2 DNA MER2_type -2472 246 159 1110 185 0 0 chr12 6865925 6866098 -137416391 + FRAM SINE Alu 1 165 -11 375 218 13 0 chr12 6866098 6866176 -137416313 - Tigger2 DNA MER2_type -2639 79 1 * 785 268 21 0 chr12 6866176 6866368 -137416121 + L1MC4 LINE L1 6689 6884 -1158 791 161 0 0 chr12 6866368 6866498 -137415991 - FLAM_C SINE Alu 0 143 14 270 178 0 0 chr12 6866545 6866590 -137415899 + FLAM_A SINE Alu 1 45 -86 2258 124 26 0 chr12 6866590 6866929 -137415560 - LTR10D LTR ERV1 0 513 166 1219 159 29 0 chr12 6866936 6867175 -137415314 - LTR10D LTR ERV1 -265 248 3 557 158 10 0 chr12 6867175 6867276 -137415213 + FLAM_A SINE Alu 39 140 -2 1690 132 33 50 chr12 6867283 6867586 -137414903 + AluJb SINE Alu 1 298 -14 3116 175 92 7 chr12 6867586 6868307 -137414182 + L1MC4a LINE L1 6838 7619 -189 2209 90 3 16 chr12 6868486 6868796 -137413693 - AluSq SINE Alu -7 306 1 236 51 0 51 chr12 6869401 6869440 -137413049 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2045 120 13 10 chr12 6870555 6870863 -137411626 - AluSq SINE Alu -4 309 1 2066 116 0 7 chr12 6870934 6871227 -137411262 + AluSq SINE Alu 1 291 -22 216 150 0 0 chr12 6871227 6871234 -137411255 + (TAGA)n Simple_repeat Simple_repeat 1 7 -33 2286 51 40 10 chr12 6871234 6871530 -137410959 + AluY SINE Alu 1 305 -6 216 150 0 0 chr12 6871530 6871562 -137410927 + (TAGA)n Simple_repeat Simple_repeat 6 40 0 3537 243 69 18 chr12 6871563 6872495 -137409994 - L2 LINE L2 -248 3065 2067 1611 121 110 8 chr12 6872495 6872759 -137409730 + AluJb SINE Alu 2 292 -20 3537 243 69 18 chr12 6872759 6872944 -137409545 - L2 LINE L2 -1246 2067 1893 2203 105 0 3 chr12 6872944 6873249 -137409240 - AluSg SINE Alu -6 304 1 1743 144 30 0 chr12 6874429 6874700 -137407789 - AluJo SINE Alu -14 298 20 2172 121 0 13 chr12 6875144 6875450 -137407039 + AluSx SINE Alu 1 302 -10 2263 82 0 0 chr12 6875459 6875752 -137406737 + AluSg SINE Alu 4 296 -14 354 263 40 66 chr12 6877482 6877634 -137404855 + MIR3 SINE MIR 77 206 -2 2257 104 0 13 chr12 6877739 6878055 -137404434 - AluSx SINE Alu 0 312 1 2388 44 0 17 chr12 6878127 6878424 -137404065 - AluY SINE Alu -19 292 1 685 117 15 209 chr12 6878591 6878787 -137403702 - FRAM SINE Alu -18 158 1 328 248 67 29 chr12 6878826 6878931 -137403558 - L1MC4a LINE L1 -1839 5969 5861 1054 149 29 11 chr12 6878942 6879117 -137403372 + AluSg/x SINE Alu 120 297 -15 1771 176 0 23 chr12 6879126 6879427 -137403062 + AluSx SINE Alu 1 294 -18 231 125 0 0 chr12 6879427 6879467 -137403022 + (TA)n Simple_repeat Simple_repeat 1 40 0 813 191 0 32 chr12 6879481 6879638 -137402851 - AluJ SINE Alu -21 291 140 555 186 10 10 chr12 6879702 6879804 -137402685 - AluJ SINE Alu -149 163 62 303 247 157 0 chr12 6879804 6879893 -137402596 - L1MC4a LINE L1 -1982 5826 5724 1602 181 13 25 chr12 6880634 6880948 -137401541 + AluJb SINE Alu 1 310 -2 799 155 0 49 chr12 6881325 6881467 -137401022 - AluJ SINE Alu -176 136 2 1755 146 13 17 chr12 6881538 6881839 -137400650 + AluJo SINE Alu 1 300 -12 2174 114 0 3 chr12 6882624 6882930 -137399559 - AluSg SINE Alu -4 306 2 859 235 77 20 chr12 6883135 6883382 -137399107 - MIR SINE MIR 0 262 2 337 270 30 10 chr12 6883423 6883523 -137398966 - L2 LINE L2 -218 3054 2953 2168 93 3 29 chr12 6883593 6883906 -137398583 + AluSx SINE Alu 1 305 -7 507 282 109 15 chr12 6888311 6888513 -137393976 + MIR SINE MIR 23 243 -19 1161 141 39 0 chr12 6889423 6889629 -137392860 - L1MC1 LINE L1 -1 6332 6119 1161 153 124 0 chr12 6889634 6889875 -137392614 - L1MC1 LINE L1 -252 6081 5811 2140 95 7 0 chr12 6890758 6891054 -137391435 + AluSp SINE Alu 1 298 -15 1102 213 19 5 chr12 6891429 6891645 -137390844 + MER20 DNA MER1_type 1 219 0 226 329 130 28 chr12 6897956 6898172 -137384317 + MIR SINE MIR 15 252 -10 318 308 88 40 chr12 6898269 6898418 -137384071 + MIR SINE MIR 15 180 -82 1862 124 3 7 chr12 6898418 6898700 -137383789 + AluSx SINE Alu 15 295 -17 318 308 88 40 chr12 6898700 6898777 -137383712 + MIR SINE MIR 180 252 -10 1440 115 74 0 chr12 6900043 6900260 -137382229 + AluSg SINE Alu 1 233 -77 284 289 24 0 chr12 6901483 6901566 -137380923 - HsTC2 DNA Tc2 -1813 85 1 3695 91 13 58 chr12 6902499 6902919 -137379570 + MER1A DNA MER1_type 1 392 -2308 2268 84 7 0 chr12 6902919 6903218 -137379271 + AluSp SINE Alu 1 301 -12 3695 91 13 58 chr12 6903218 6903349 -137379140 + MER1A DNA MER1_type 392 527 0 2072 113 3 10 chr12 6903400 6903701 -137378788 - AluSx SINE Alu -13 299 1 2364 48 0 3 chr12 6904165 6904487 -137378002 + AluY SINE Alu 1 311 0 4272 158 5 30 chr12 6904492 6904647 -137377842 + MER44D DNA MER2_type 7 164 -2323 2380 53 0 10 chr12 6904647 6904947 -137377542 + AluY SINE Alu 2 298 -13 4272 158 5 30 chr12 6904947 6905534 -137376955 + MER44D DNA MER2_type 164 603 -2 2402 48 0 19 chr12 6905712 6906021 -137376468 - AluY SINE Alu -8 303 1 425 227 21 50 chr12 6906219 6906360 -137376129 - MIR SINE MIR 0 262 126 1342 175 90 11 chr12 6906360 6906658 -137375831 + AluJo SINE Alu 1 312 0 1202 193 155 19 chr12 6906667 6906932 -137375557 + AluJb SINE Alu 1 301 -1 281 229 24 0 chr12 6906936 6907019 -137375470 + GA-rich Low_complexity Low_complexity 4 88 0 306 292 0 26 chr12 6907030 6907143 -137375346 - MIR SINE MIR -133 129 20 249 200 46 15 chr12 6908730 6908795 -137373694 + GA-rich Low_complexity Low_complexity 5 71 0 1046 148 79 30 chr12 6912803 6913006 -137369483 + AluJb SINE Alu 72 284 -28 23 68 0 0 chr12 6914746 6914790 -137367699 + GC_rich Low_complexity Low_complexity 1 44 0 28 0 0 0 chr12 6915080 6915108 -137367381 + GC_rich Low_complexity Low_complexity 1 28 0 2159 81 7 10 chr12 6915577 6915873 -137366616 - AluSx SINE Alu -17 295 1 2226 131 7 0 chr12 6917093 6917398 -137365091 + AluSx SINE Alu 1 307 -5 2230 103 27 0 chr12 6917505 6917797 -137364692 - AluSx SINE Alu -12 300 1 1068 119 0 7 chr12 6917833 6917984 -137364505 - AluJo SINE Alu -3 309 160 580 162 0 36 chr12 6917985 6918096 -137364393 - AluJo SINE Alu -204 108 2 1607 124 142 47 chr12 6918189 6918357 -137364132 - AluSx SINE Alu -10 302 97 2533 61 0 3 chr12 6918357 6918651 -137363838 - AluY SINE Alu -18 293 1 1607 124 142 47 chr12 6918651 6918756 -137363733 - AluSx SINE Alu -215 97 3 294 233 213 64 chr12 6920581 6920783 -137361706 - MIR SINE MIR -24 238 7 2292 93 3 10 chr12 6921221 6921521 -137360968 - AluSx SINE Alu -12 300 3 1236 99 0 6 chr12 6923364 6923526 -137358963 + AluSg/x SINE Alu 138 298 -12 2318 76 7 7 chr12 6923671 6923961 -137358528 - AluSx SINE Alu -22 290 1 1873 131 6 85 chr12 6924385 6924578 -137357911 - AluJo SINE Alu -9 303 145 2172 133 3 0 chr12 6924578 6924872 -137357617 - AluSx SINE Alu -17 295 1 1873 131 6 85 chr12 6924872 6925007 -137357482 - AluJo SINE Alu -167 145 1 1680 115 99 0 chr12 6926207 6926450 -137356039 - AluSq SINE Alu -14 299 33 187 367 10 0 chr12 6926454 6926552 -137355937 + MIR SINE MIR 150 248 -14 2290 76 41 0 chr12 6927884 6928175 -137354314 + AluSq SINE Alu 1 303 -10 2277 71 34 17 chr12 6928177 6928472 -137354017 + AluSc SINE Alu 1 300 -9 602 124 29 109 chr12 6928523 6928660 -137353829 - FLAM_C SINE Alu -7 126 1 276 241 241 9 chr12 6929001 6929117 -137353372 - MIR SINE MIR -57 205 63 2067 91 34 47 chr12 6930776 6930915 -137351574 + AluSp SINE Alu 1 140 -173 2375 84 3 3 chr12 6930915 6931212 -137351277 + AluSq SINE Alu 5 301 -12 2067 91 34 47 chr12 6931212 6931370 -137351119 + AluSp SINE Alu 140 294 -19 2234 118 10 0 chr12 6931379 6931676 -137350813 + AluSx SINE Alu 1 300 -12 669 159 0 110 chr12 6931682 6931797 -137350692 + FLAM_A SINE Alu 1 98 -204 2121 78 17 34 chr12 6931797 6932092 -137350397 - AluSg SINE Alu -20 290 1 669 159 0 110 chr12 6932092 6932121 -137350368 + FLAM_A SINE Alu 98 129 -173 2172 118 10 0 chr12 6932974 6933262 -137349227 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr12 6933275 6933303 -137349186 + AT_rich Low_complexity Low_complexity 1 28 0 296 388 55 0 chr12 6933460 6933715 -137348774 - L1ME3 LINE L1 -277 5885 5617 1361 222 54 13 chr12 6934081 6934396 -137348093 + MER58B DNA MER1_type 1 328 -13 2159 135 0 7 chr12 6934398 6934701 -137347788 + AluSx SINE Alu 1 301 -11 223 337 31 38 chr12 6934910 6935171 -137347318 + L2 LINE L2 2715 2973 -341 1032 154 178 65 chr12 6935282 6935313 -137347176 - AluJb SINE Alu -16 296 270 2281 99 0 0 chr12 6935313 6935607 -137346882 + AluSc SINE Alu 5 298 -11 1032 154 178 65 chr12 6935607 6935789 -137346700 - AluJb SINE Alu -42 270 59 817 83 9 0 chr12 6935838 6935947 -137346542 - AluSc SINE Alu -10 299 190 1091 151 0 0 chr12 6936174 6936333 -137346156 - AluSg/x SINE Alu -17 295 137 2044 141 13 10 chr12 6936369 6936675 -137345814 + AluSx SINE Alu 1 307 -5 1766 130 3 31 chr12 6938266 6938400 -137344089 + AluSx SINE Alu 2 138 -176 2141 83 66 21 chr12 6938400 6938535 -137343954 + AluSx SINE Alu 1 128 -184 2408 92 3 16 chr12 6938535 6938850 -137343639 + AluSx SINE Alu 1 311 -1 2141 83 66 21 chr12 6938850 6939003 -137343486 + AluSx SINE Alu 128 302 -10 2633 53 0 0 chr12 6939007 6939310 -137343179 + AluY SINE Alu 1 303 -8 1766 130 3 31 chr12 6939310 6939491 -137342998 + AluSx SINE Alu 141 314 0 2246 109 13 3 chr12 6939657 6939960 -137342529 + AluSp SINE Alu 1 306 -7 2064 139 7 0 chr12 6939960 6940261 -137342228 + AluSc SINE Alu 1 304 -5 1808 95 0 0 chr12 6941113 6941335 -137341154 - AluSq SINE Alu -91 222 1 238 210 0 0 chr12 6943203 6943265 -137339224 + L1ME LINE L1 5717 5778 -343 823 180 77 6 chr12 6943265 6943448 -137339041 - MER2 DNA MER2_type 0 345 150 217 254 51 0 chr12 6943463 6943522 -137338967 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 1638 169 59 0 chr12 6943643 6943916 -137338573 - AluJb SINE Alu -23 289 1 25 31 0 0 chr12 6943949 6943981 -137338508 + AT_rich Low_complexity Low_complexity 1 32 0 2301 74 7 0 chr12 6944530 6944814 -137337675 - AluY SINE Alu -25 286 1 1613 90 0 5 chr12 6944833 6945034 -137337455 + AluSg/x SINE Alu 96 295 -17 2168 122 0 7 chr12 6945048 6945342 -137337147 + AluSx SINE Alu 1 292 -20 2257 84 0 11 chr12 6945349 6945636 -137336853 + AluY SINE Alu 1 284 -27 198 91 0 0 chr12 6945636 6945669 -137336820 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1342 183 119 0 chr12 6945675 6945927 -137336562 + AluJo SINE Alu 1 282 -30 2150 136 3 0 chr12 6945927 6946228 -137336261 - AluSx SINE Alu -8 304 3 2267 114 0 7 chr12 6947728 6948027 -137334462 + AluSx SINE Alu 1 297 -15 1063 169 0 33 chr12 6948028 6948198 -137334291 + AluJo/FRAM SINE Alu 134 299 -13 1584 120 14 0 chr12 6948198 6948415 -137334074 + AluSq SINE Alu 1 220 -93 1063 169 0 33 chr12 6948415 6948428 -137334061 + AluJo/FRAM SINE Alu 299 311 -1 2398 216 59 32 chr12 6948432 6948719 -137333770 + L1MC4a LINE L1 7074 7352 -456 2389 94 0 0 chr12 6948719 6949017 -137333472 + AluSc SINE Alu 1 298 -11 2398 216 59 32 chr12 6949017 6949149 -137333340 + L1MC4a LINE L1 7352 7479 -329 2246 108 10 7 chr12 6949149 6949445 -137333044 + AluSx SINE Alu 1 297 -15 2398 216 59 32 chr12 6949445 6949740 -137332749 + L1MC4a LINE L1 7479 7808 0 1622 209 0 17 chr12 6949771 6950073 -137332416 + AluJo SINE Alu 3 299 -13 2590 71 0 3 chr12 6950075 6950384 -137332105 + AluSc SINE Alu 1 308 -1 184 250 0 0 chr12 6950408 6950448 -137332041 + MIR SINE MIR 63 102 -106 2437 79 3 0 chr12 6953076 6953367 -137329122 - AluSp SINE Alu -21 292 1 2374 82 0 50 chr12 6954722 6955041 -137327448 + AluSq SINE Alu 1 303 -10 1135 155 0 0 chr12 6955043 6955211 -137327278 + AluSc SINE Alu 134 301 -8 1921 109 7 63 chr12 6955600 6955750 -137326739 + AluSx SINE Alu 1 126 -185 2432 82 0 0 chr12 6955750 6956043 -137326446 + AluSx SINE Alu 1 293 -19 1921 109 7 63 chr12 6956043 6956220 -137326269 + AluSx SINE Alu 126 311 0 2183 103 22 22 chr12 6956220 6956531 -137325958 + AluY SINE Alu 1 311 0 710 253 0 0 chr12 6956552 6956706 -137325783 + FRAM SINE Alu 1 154 -22 2265 104 3 10 chr12 6956713 6957022 -137325467 + AluSx SINE Alu 1 307 -5 2340 88 0 3 chr12 6957761 6958056 -137324433 + AluSc SINE Alu 1 294 -15 403 134 30 0 chr12 6958107 6958174 -137324315 - MER46A DNA MER2_type 0 236 168 264 148 37 0 chr12 6958144 6958198 -137324291 + MER46A DNA MER2_type 99 154 -82 * 1510 194 0 48 chr12 6958387 6958701 -137323788 + AluJo SINE Alu 6 304 -8 198 0 0 0 chr12 6961211 6961233 -137321256 + (TCC)n Simple_repeat Simple_repeat 3 24 0 2241 105 14 0 chr12 6963231 6963526 -137318963 + AluSx SINE Alu 4 302 -10 241 268 32 16 chr12 6965897 6966020 -137316469 + (CGGGG)n Simple_repeat Simple_repeat 4 128 0 473 0 18 0 chr12 6966904 6966961 -137315528 + (CA)n Simple_repeat Simple_repeat 2 59 0 2165 112 3 0 chr12 6968968 6969271 -137313218 + AluSg SINE Alu 1 304 -6 1365 148 103 8 chr12 6969405 6969648 -137312841 - AluJb SINE Alu 0 312 47 2477 56 3 0 chr12 6969660 6969965 -137312524 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 6972177 6972236 -137310253 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 6973371 6973520 -137308969 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 6973900 6974062 -137308427 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 6974352 6974657 -137307832 + AluSx SINE Alu 1 305 -7 464 82 0 0 chr12 6974662 6974723 -137307766 + Alu SINE Alu 2 62 -248 1225 186 8 35 chr12 6974845 6975103 -137307386 - AluSx SINE Alu -61 251 1 2070 123 16 0 chr12 6975116 6975424 -137307065 - AluSq SINE Alu 0 313 1 2193 116 0 3 chr12 6976632 6976943 -137305546 - AluSg SINE Alu 0 310 1 234 252 118 34 chr12 6977078 6977197 -137305292 - L3b LINE CR1 -146 1437 1309 2222 92 0 10 chr12 6978080 6978385 -137304104 - AluSq SINE Alu -11 302 1 1333 104 0 120 chr12 6978644 6978687 -137303802 + AluJo SINE Alu 85 132 -180 2145 98 0 0 chr12 6978687 6978973 -137303516 - AluSc SINE Alu -20 289 4 1333 104 0 120 chr12 6978973 6979004 -137303485 + AluJo SINE Alu 132 165 -147 1683 137 10 64 chr12 6979004 6979317 -137303172 + AluSx SINE Alu 1 296 -16 1333 104 0 120 chr12 6979317 6979478 -137303011 + AluJo SINE Alu 165 292 -20 2273 110 0 0 chr12 6979478 6979787 -137302702 + AluSg1 SINE Alu 1 309 0 1333 104 0 120 chr12 6979787 6979799 -137302690 + AluJo SINE Alu 292 304 -8 199 222 93 0 chr12 6979974 6980028 -137302461 - MIR3 SINE MIR -19 189 131 261 0 0 0 chr12 6980628 6980657 -137301832 + (GGCTG)n Simple_repeat Simple_repeat 5 33 0 283 227 147 0 chr12 6981326 6981401 -137301088 + MER103 DNA DNA 8 93 -73 259 195 85 24 chr12 6981409 6981491 -137300998 + L1MC5 LINE L1 7820 7906 -55 2077 99 0 11 chr12 6981616 6981922 -137300567 + AluSg SINE Alu 1 303 0 1744 159 0 3 chr12 6982021 6982311 -137300178 + AluJb SINE Alu 22 310 -2 254 327 73 42 chr12 6983226 6983391 -137299098 - MIR3 SINE MIR -21 187 18 315 253 0 13 chr12 6984439 6984518 -137297971 - MIR SINE MIR -101 107 30 546 301 52 16 chr12 6985338 6985587 -137296902 + L2 LINE L2 2127 2384 -930 665 299 33 29 chr12 6985587 6985828 -137296661 - MIR SINE MIR 0 262 21 754 146 31 23 chr12 6986439 6986569 -137295920 + FLAM_C SINE Alu 2 132 -11 311 313 27 33 chr12 6986579 6986729 -137295760 + L2 LINE L2 2915 3063 -209 471 77 0 44 chr12 6986950 6987041 -137295448 - L1M4 LINE L1 -1093 5053 4967 271 290 270 0 chr12 6987122 6987322 -137295167 - L1M4 LINE L1 -1160 4986 4733 1885 134 0 20 chr12 6987640 6987938 -137294551 + AluJo SINE Alu 1 292 -20 487 277 22 0 chr12 6988463 6988600 -137293889 - MIR3 SINE MIR -33 175 36 294 333 0 0 chr12 6989021 6989117 -137293372 + CT-rich Low_complexity Low_complexity 3 98 0 2516 59 0 0 chr12 6990324 6990630 -137291859 - AluY SINE Alu -5 306 1 2055 110 0 39 chr12 6990633 6990942 -137291547 - AluSx SINE Alu -15 297 1 2280 77 3 3 chr12 6992257 6992554 -137289935 - AluSc SINE Alu -12 297 1 1071 88 0 0 chr12 6992554 6992690 -137289799 - AluSq/x SINE Alu -176 136 1 422 285 83 7 chr12 6992691 6992835 -137289654 - MIR SINE MIR -48 214 60 1344 150 0 26 chr12 6993055 6993288 -137289201 + AluJb SINE Alu 85 311 -1 1757 133 7 18 chr12 6993303 6993623 -137288866 + AluJb SINE Alu 1 317 0 716 142 0 0 chr12 6993627 6993733 -137288756 + AluSq/x SINE Alu 3 108 -204 2246 99 3 0 chr12 6993735 6994039 -137288450 + AluY SINE Alu 1 305 -6 1363 139 102 16 chr12 6994173 6994417 -137288072 - AluJb SINE Alu -1 311 47 2434 56 7 0 chr12 6994429 6994733 -137287756 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 6996944 6997003 -137285486 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 6998138 6998287 -137284202 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 6998667 6998829 -137283660 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 6999119 6999424 -137283065 + AluSx SINE Alu 1 305 -7 2128 106 0 7 chr12 6999428 6999731 -137282758 + AluSc SINE Alu 1 301 -8 222 305 168 18 chr12 7000266 7000433 -137282056 + MIR SINE MIR 20 211 -51 2297 85 3 0 chr12 7000481 7000786 -137281703 + AluSq SINE Alu 1 306 -7 200 263 58 109 chr12 7001068 7001205 -137281284 + L2 LINE L2 2586 2715 -599 756 167 19 119 chr12 7001354 7001564 -137280925 - L2 LINE L2 -1 3312 3124 281 158 12 0 chr12 7001994 7002076 -137280413 + (CA)n Simple_repeat Simple_repeat 2 84 0 2029 112 17 3 chr12 7002246 7002542 -137279947 + AluSx SINE Alu 1 300 -12 1071 142 78 34 chr12 7002952 7003156 -137279333 + Charlie1 DNA MER1_type 5 217 -2544 550 147 101 0 chr12 7003156 7003285 -137279204 + Charlie1 DNA MER1_type 2620 2761 0 358 57 80 11 chr12 7003323 7003411 -137279078 + GA-rich Low_complexity Low_complexity 1 94 0 257 266 18 83 chr12 7005600 7005709 -137276780 + MIR SINE MIR 1 102 -160 1467 168 6 78 chr12 7005714 7005845 -137276644 + AluJb SINE Alu 1 140 -172 2248 102 0 0 chr12 7005845 7006140 -137276349 + AluSq SINE Alu 1 295 -18 2317 85 0 13 chr12 7006141 7006457 -137276032 + AluSq SINE Alu 1 312 -1 2032 101 29 16 chr12 7006466 7006773 -137275716 + AluSx SINE Alu 1 311 -1 1467 168 6 78 chr12 7006773 7006950 -137275539 + AluJb SINE Alu 148 298 -14 2052 119 7 0 chr12 7006957 7007250 -137275239 + AluSx SINE Alu 1 295 -17 1849 182 0 0 chr12 7007257 7007559 -137274930 + AluSx SINE Alu 7 308 -4 291 239 162 8 chr12 7007648 7007765 -137274724 - L2 LINE L2 -21 3292 3158 822 133 7 0 chr12 7007848 7007983 -137274506 + AluSg/x SINE Alu 171 306 -6 297 164 0 33 chr12 7008093 7008154 -137274335 + MIR SINE MIR 119 177 -85 241 108 0 0 chr12 7008271 7008332 -137274157 + Alu SINE Alu 251 311 0 1881 154 54 42 chr12 7008340 7008605 -137273884 - L1MB4 LINE L1 -87 6093 5820 2335 76 3 10 chr12 7008605 7008919 -137273570 - AluSp SINE Alu -1 312 1 1881 154 54 42 chr12 7008919 7009062 -137273427 - L1MB4 LINE L1 -360 5820 5680 2331 64 14 0 chr12 7009143 7009438 -137273051 + AluY SINE Alu 1 299 -12 2155 88 10 7 chr12 7009439 7009736 -137272753 + AluY SINE Alu 1 298 -13 1546 186 9 40 chr12 7009788 7009985 -137272504 - AluJo SINE Alu 0 312 127 2127 103 0 17 chr12 7009985 7010286 -137272203 + AluSx SINE Alu 1 296 -16 1546 186 9 40 chr12 7010286 7010410 -137272079 - AluJo SINE Alu -185 127 1 447 325 55 65 chr12 7010597 7010982 -137271507 + L2 LINE L2 2837 3217 -55 658 170 0 0 chr12 7011199 7011305 -137271184 + AluSg/x SINE Alu 191 296 -14 2149 88 10 3 chr12 7011307 7011603 -137270886 + AluSq SINE Alu 1 298 -15 2367 81 0 0 chr12 7012007 7012317 -137270172 - AluY SINE Alu -1 310 1 1888 113 0 31 chr12 7012444 7012624 -137269865 - AluSx SINE Alu -3 309 140 2352 79 3 3 chr12 7012624 7012929 -137269560 - AluSp SINE Alu -8 305 1 1888 113 0 31 chr12 7012929 7013040 -137269449 - AluSx SINE Alu -172 140 27 264 68 25 29 chr12 7013160 7013212 -137269277 - AluSx SINE Alu -262 38 1 737 252 40 17 chr12 7013214 7013401 -137269088 + L1MEc LINE L1 2315 2470 -3745 1971 107 47 10 chr12 7013401 7013699 -137268790 + AluSx SINE Alu 1 309 -3 737 252 40 17 chr12 7013699 7013791 -137268698 + L1MEc LINE L1 2470 2558 -3657 1537 115 0 5 chr12 7013791 7014008 -137268481 + AluSx SINE Alu 1 216 -96 4844 61 3 12 chr12 7014008 7014650 -137267839 + LTR13 LTR ERVK 372 1007 0 1257 199 127 8 chr12 7014663 7014930 -137267559 - AluJo SINE Alu -2 300 2 227 248 120 86 chr12 7015000 7015117 -137267372 + MIR3 SINE MIR 47 167 -41 195 211 0 58 chr12 7015202 7015254 -137267235 + L3 LINE CR1 1516 1564 -13 2370 121 30 30 chr12 7015446 7015810 -137266679 + THE1B LTR MaLR 1 364 0 2229 73 0 30 chr12 7015855 7016155 -137266334 - AluY SINE Alu -17 294 4 2169 99 10 0 chr12 7016570 7016864 -137265625 + AluSx SINE Alu 1 297 -15 260 296 68 38 chr12 7017898 7018030 -137264459 - MIR3 SINE MIR -64 144 9 330 204 93 37 chr12 7018614 7018722 -137263767 - MIR3 SINE MIR -82 126 13 2090 108 30 0 chr12 7018812 7019107 -137263382 + AluSx SINE Alu 1 304 -8 2136 96 0 45 chr12 7021549 7021862 -137260627 + AluSg SINE Alu 1 299 -11 1523 105 113 4 chr12 7023334 7023573 -137258916 - AluSx SINE Alu -9 303 39 2157 118 7 0 chr12 7026891 7027197 -137255292 + AluSg SINE Alu 1 308 -2 1053 135 35 6 chr12 7027197 7027367 -137255122 + AluSg/x SINE Alu 134 308 -4 809 129 0 24 chr12 7027530 7027654 -137254835 - AluJb SINE Alu -191 121 1 2187 97 3 34 chr12 7027731 7028052 -137254437 + AluSx SINE Alu 1 311 -1 1717 145 99 0 chr12 7028057 7028339 -137254150 + AluJo SINE Alu 1 310 -2 209 200 11 53 chr12 7028491 7028586 -137253903 + CT-rich Low_complexity Low_complexity 1 91 0 2456 50 13 3 chr12 7028586 7028886 -137253603 - AluY SINE Alu -8 303 1 304 354 130 5 chr12 7028887 7028981 -137253508 - HAL1 LINE L1 -1218 1289 1208 2108 112 16 16 chr12 7028981 7029293 -137253196 - AluSp SINE Alu -1 312 1 304 354 130 5 chr12 7029293 7029390 -137253099 - HAL1 LINE L1 -1299 1208 1074 246 95 0 0 chr12 7029888 7029930 -137252559 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 461 227 63 66 chr12 7029932 7030184 -137252305 - L2 LINE L2 -14 3258 2938 1015 95 0 7 chr12 7030184 7030321 -137252168 + AluJb SINE Alu 1 136 -176 2244 81 3 32 chr12 7030321 7030631 -137251858 + AluY SINE Alu 1 301 -10 1312 217 195 49 chr12 7030635 7031087 -137251402 - L2 LINE L2 -366 2948 2431 1514 127 26 138 chr12 7031388 7031735 -137250754 + AluYb8 SINE Alu 1 308 0 219 284 45 11 chr12 7031754 7031842 -137250647 - L2 LINE L2 -454 2860 2770 185 324 14 14 chr12 7031886 7031957 -137250532 - L2 LINE L2 -1 3271 3201 197 338 44 66 chr12 7032158 7032386 -137250103 - L2 LINE L2 -940 2374 2152 1112 109 65 45 chr12 7032752 7032810 -137249679 - MER3 DNA MER1_type -4 205 150 2200 79 0 4 chr12 7032810 7033111 -137249378 + AluSc SINE Alu 1 300 0 1112 109 65 45 chr12 7033111 7033123 -137249366 - MER3 DNA MER1_type -59 150 140 2051 101 3 41 chr12 7033123 7033459 -137249030 + AluSx SINE Alu 1 312 0 1112 109 65 45 chr12 7033459 7033587 -137248902 - MER3 DNA MER1_type -69 140 1 2100 128 0 0 chr12 7033734 7034032 -137248457 + AluSg SINE Alu 1 298 -12 1585 155 61 4 chr12 7034101 7034378 -137248111 + AluJb SINE Alu 8 300 -12 2093 133 3 0 chr12 7034938 7035240 -137247249 + AluSx SINE Alu 1 303 -9 234 298 6 37 chr12 7036726 7036887 -137245602 + GA-rich Low_complexity Low_complexity 5 160 0 21 36 0 0 chr12 7037137 7037165 -137245324 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 64 chr12 7038326 7038404 -137244085 + C-rich Low_complexity Low_complexity 1 73 0 258 105 0 0 chr12 7038691 7038729 -137243760 + (CCG)n Simple_repeat Simple_repeat 3 40 0 26 64 0 0 chr12 7038778 7038825 -137243664 + GC_rich Low_complexity Low_complexity 1 47 0 30 97 0 0 chr12 7038876 7038969 -137243520 + GC_rich Low_complexity Low_complexity 1 93 0 23 0 0 0 chr12 7039718 7039741 -137242748 + GC_rich Low_complexity Low_complexity 1 23 0 213 324 0 0 chr12 7041733 7041801 -137240688 + GA-rich Low_complexity Low_complexity 1 68 0 335 287 10 0 chr12 7042044 7042145 -137240344 + GA-rich Low_complexity Low_complexity 3 104 0 386 224 197 14 chr12 7043961 7044108 -137238381 + MIR SINE MIR 86 259 -3 180 273 109 0 chr12 7048603 7048658 -137233831 - MIR SINE MIR -162 100 40 804 161 0 22 chr12 7049085 7049222 -137233267 + AluJb SINE Alu 1 134 -178 370 250 76 18 chr12 7049758 7049896 -137232593 + MIR SINE MIR 45 200 -8 237 313 0 0 chr12 7050296 7050363 -137232126 + CT-rich Low_complexity Low_complexity 2 68 0 201 132 0 0 chr12 7050740 7050778 -137231711 + (TC)n Simple_repeat Simple_repeat 1 38 0 381 131 0 0 chr12 7051006 7051067 -137231422 + (CA)n Simple_repeat Simple_repeat 1 61 0 406 218 156 5 chr12 7051555 7051695 -137230794 + MIR SINE MIR 34 191 -63 1899 169 0 7 chr12 7052430 7052732 -137229757 + AluJb SINE Alu 1 300 -12 242 200 0 62 chr12 7053374 7053439 -137229050 - MLT1F LTR MaLR 0 542 482 714 202 0 0 chr12 7053439 7053558 -137228931 + AluJo SINE Alu 1 119 -193 1346 96 0 0 chr12 7053558 7053735 -137228754 - AluSg/x SINE Alu -15 295 119 23 0 0 0 chr12 7053736 7053759 -137228730 + AT_rich Low_complexity Low_complexity 1 23 0 2140 82 0 14 chr12 7053759 7054052 -137228437 - AluY SINE Alu -22 289 1 888 235 0 0 chr12 7054073 7054260 -137228229 + AluJo SINE Alu 124 310 -2 1256 288 70 21 chr12 7054277 7054704 -137227785 - MLT1F LTR MaLR -92 450 3 215 261 120 43 chr12 7055722 7055814 -137226675 + MIR SINE MIR 118 216 -46 1906 161 0 27 chr12 7055958 7056287 -137226202 - 7SLRNA srpRNA srpRNA 0 320 1 1006 99 0 0 chr12 7056326 7056457 -137226032 - AluY SINE Alu -180 131 1 473 273 25 61 chr12 7056512 7056596 -137225893 + MIR SINE MIR 33 118 -144 1675 186 3 7 chr12 7056596 7056892 -137225597 + AluJo SINE Alu 1 295 -17 473 273 25 61 chr12 7056892 7057005 -137225484 + MIR SINE MIR 118 223 -39 2337 93 0 0 chr12 7057566 7057878 -137224611 + AluSx SINE Alu 1 312 0 727 174 82 51 chr12 7057893 7058041 -137224448 + L1MB3 LINE L1 5978 6135 -48 2330 96 0 0 chr12 7058041 7058342 -137224147 + AluSx SINE Alu 1 301 -11 727 174 82 51 chr12 7058342 7058388 -137224101 + L1MB3 LINE L1 6135 6178 -5 21 36 0 0 chr12 7058388 7058416 -137224073 + AT_rich Low_complexity Low_complexity 1 28 0 294 274 53 11 chr12 7058423 7058518 -137223971 - L2 LINE L2 -8 3264 3166 618 259 30 35 chr12 7058632 7058864 -137223625 + MLT1J LTR MaLR 279 509 -2 323 286 179 12 chr12 7058924 7059092 -137223397 + L2 LINE L2 3117 3312 -1 726 281 58 8 chr12 7059178 7059420 -137223069 - MLT1J LTR MaLR -242 269 16 1287 154 27 64 chr12 7059464 7059762 -137222727 + Charlie1a DNA MER1_type 1 287 -1168 690 251 25 33 chr12 7059762 7060005 -137222484 + AluSq SINE Alu 1 241 -72 2168 109 0 6 chr12 7060459 7060771 -137221718 + AluY SINE Alu 1 310 -1 355 113 0 0 chr12 7060780 7060833 -137221656 + AluJb SINE Alu 1 53 -249 1212 88 26 5 chr12 7060857 7061050 -137221439 + LTR3b LTR ERVK 304 500 0 1415 178 0 20 chr12 7061051 7061304 -137221185 + AluJb SINE Alu 50 297 -15 697 153 0 0 chr12 7061354 7061465 -137221024 - AluSx SINE Alu -2 310 200 891 76 30 15 chr12 7061465 7061597 -137220892 - AluSx SINE Alu -175 138 5 2314 82 20 0 chr12 7061618 7061923 -137220566 - AluY SINE Alu 0 311 1 1083 111 0 12 chr12 7061923 7062075 -137220414 - AluSq SINE Alu -15 298 147 6391 154 196 20 chr12 7062075 7063516 -137218973 + pTR5 LTR ERV1 743 2437 -1 577 152 0 50 chr12 7063516 7063537 -137218952 - AluSg SINE Alu -158 152 131 1914 138 14 3 chr12 7063537 7063834 -137218655 - AluSq SINE Alu -13 300 1 577 152 0 50 chr12 7063834 7063911 -137218578 - AluSg SINE Alu -179 131 59 991 128 27 0 chr12 7063923 7064071 -137218418 - AluSx SINE Alu -159 153 2 692 145 8 0 chr12 7064098 7064215 -137218274 - FLAM_A SINE Alu 0 142 25 351 273 28 21 chr12 7064218 7064361 -137218128 - L1 LINE L1 -2452 3694 3551 1968 119 24 0 chr12 7064407 7064700 -137217789 + AluSq SINE Alu 1 300 -13 2320 99 0 0 chr12 7064705 7065008 -137217481 + AluSx SINE Alu 1 303 -9 2224 93 0 7 chr12 7065013 7065315 -137217174 + AluY SINE Alu 1 300 -11 1164 119 11 0 chr12 7065316 7065493 -137216996 + AluSg/x SINE Alu 132 310 0 709 174 8 30 chr12 7065501 7065633 -137216856 - FLAM_C SINE Alu -1 132 4 1414 261 133 23 chr12 7065633 7065727 -137216762 + L2 LINE L2 2449 2531 -782 2042 133 3 0 chr12 7065727 7066021 -137216468 + AluSx SINE Alu 1 295 -17 222 37 0 0 chr12 7066022 7066049 -137216440 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1414 261 133 23 chr12 7066049 7066633 -137215856 + L2 LINE L2 2530 3227 -86 187 250 143 0 chr12 7066771 7066827 -137215662 + L2 LINE L2 3209 3272 0 343 275 22 33 chr12 7066902 7067084 -137215405 + CT-rich Low_complexity Low_complexity 1 180 0 339 341 117 11 chr12 7067085 7067264 -137215225 - MIR3 SINE MIR -5 203 6 2106 138 0 40 chr12 7067292 7067617 -137214872 - AluSx SINE Alu 0 312 1 2052 133 0 37 chr12 7067624 7067948 -137214541 - AluSx SINE Alu 0 312 1 364 333 82 7 chr12 7067972 7068119 -137214370 + MIR SINE MIR 34 191 -71 2228 109 7 0 chr12 7068133 7068435 -137214054 + AluSg SINE Alu 1 304 -6 653 111 0 0 chr12 7068444 7068543 -137213946 + AluJ/FRAM SINE Alu 214 312 0 2651 46 3 0 chr12 7068653 7068959 -137213530 + AluY SINE Alu 1 307 -4 213 257 40 14 chr12 7069061 7069135 -137213354 + CT-rich Low_complexity Low_complexity 3 78 0 266 224 188 0 chr12 7069274 7069359 -137213130 + MIR SINE MIR 96 196 -66 213 294 0 0 chr12 7069529 7069580 -137212909 + MIR SINE MIR 95 145 -63 235 197 158 0 chr12 7069704 7069780 -137212709 + MIR SINE MIR 175 262 0 236 246 121 95 chr12 7071258 7071378 -137211111 + MIR3 SINE MIR 14 146 -116 2474 79 0 3 chr12 7071378 7071683 -137210806 - AluY SINE Alu -7 304 1 236 246 121 95 chr12 7071683 7071771 -137210718 + MIR3 SINE MIR 146 230 -32 1173 183 134 15 chr12 7072135 7072259 -137210230 + AluSx SINE Alu 1 109 -193 2027 97 93 0 chr12 7072259 7072538 -137209951 + AluY SINE Alu 1 305 -6 2192 96 0 26 chr12 7072541 7072869 -137209620 + AluSg SINE Alu 1 310 0 1173 183 134 15 chr12 7072869 7073008 -137209481 + AluSx SINE Alu 110 300 -2 221 320 40 30 chr12 7073046 7073146 -137209343 - L2 LINE L2 -61 3252 3152 2460 93 0 0 chr12 7073284 7073586 -137208903 + AluSx SINE Alu 1 302 -10 190 362 35 17 chr12 7073899 7074015 -137208474 - L2 LINE L2 -270 3002 2885 1539 190 4 7 chr12 7076272 7076546 -137205943 - AluJo SINE Alu -39 273 1 222 37 0 0 chr12 7077190 7077217 -137205272 + (TC)n Simple_repeat Simple_repeat 2 28 0 1961 119 42 7 chr12 7078288 7078574 -137203915 + AluSx SINE Alu 1 296 -16 2375 75 3 3 chr12 7078574 7078867 -137203622 + AluY SINE Alu 1 293 -18 2369 95 0 0 chr12 7079327 7079623 -137202866 + AluSc SINE Alu 1 296 -13 23 33 0 0 chr12 7079768 7079798 -137202691 + AT_rich Low_complexity Low_complexity 1 30 0 2151 110 10 0 chr12 7079809 7080100 -137202389 + AluSc SINE Alu 5 298 -11 2260 129 0 0 chr12 7081371 7081674 -137200815 - AluSx SINE Alu -9 303 1 2225 113 0 26 chr12 7081681 7081992 -137200497 - AluSx SINE Alu -9 303 1 1537 149 108 11 chr12 7083701 7083969 -137198520 - AluJb SINE Alu -18 294 1 292 196 9 103 chr12 7083976 7084083 -137198406 - FLAM_A SINE Alu -8 125 29 1774 147 13 42 chr12 7084158 7084470 -137198019 - AluJb SINE Alu -9 303 1 2194 119 0 0 chr12 7084563 7084857 -137197632 - AluSx SINE Alu -18 294 1 2299 123 0 0 chr12 7084866 7085176 -137197313 - AluSx SINE Alu -2 310 1 214 211 0 0 chr12 7085789 7085827 -137196662 + T-rich Low_complexity Low_complexity 1 38 0 2131 121 16 22 chr12 7085989 7086303 -137196186 - AluSx SINE Alu 0 312 1 1983 149 3 3 chr12 7086704 7086999 -137195490 + AluSx SINE Alu 1 295 -17 2341 79 0 0 chr12 7087000 7087311 -137195178 + AluY SINE Alu 1 311 0 2355 102 3 0 chr12 7087483 7087778 -137194711 + AluSg SINE Alu 2 297 -13 475 109 0 0 chr12 7087924 7087988 -137194501 - AluS SINE Alu -238 75 12 460 250 79 95 chr12 7088025 7088143 -137194346 + L2 LINE L2 2584 2702 -570 2053 138 3 3 chr12 7088143 7088455 -137194034 + AluSx SINE Alu 1 312 0 460 250 79 95 chr12 7088455 7088790 -137193699 + L2 LINE L2 2702 3039 -233 1108 200 33 9 chr12 7088883 7089098 -137193391 + AluJo SINE Alu 1 220 -92 1088 122 0 0 chr12 7089120 7089267 -137193222 + AluSg/x SINE Alu 157 303 -9 2493 70 0 3 chr12 7089270 7089572 -137192917 + AluY SINE Alu 1 301 -10 563 237 14 14 chr12 7089577 7089716 -137192773 + FLAM_A SINE Alu 4 142 0 298 304 0 11 chr12 7089758 7089850 -137192639 + L2 LINE L2 3182 3272 0 849 154 0 0 chr12 7089920 7090043 -137192446 + FLAM_C SINE Alu 2 124 -9 25 0 0 0 chr12 7090043 7090068 -137192421 + AT_rich Low_complexity Low_complexity 1 25 0 2236 129 3 0 chr12 7090068 7090405 -137192084 + AluSx SINE Alu 1 338 0 189 282 237 15 chr12 7090416 7090547 -137191942 + L2 LINE L2 1833 1992 -1322 1866 119 90 4 chr12 7090557 7090834 -137191655 - AluSq SINE Alu -12 301 1 2399 99 0 0 chr12 7090834 7091137 -137191352 - AluSg SINE Alu -7 303 1 2122 123 0 43 chr12 7091144 7091470 -137191019 - AluSx SINE Alu 0 312 1 744 282 68 82 chr12 7091869 7092224 -137190265 + L2 LINE L2 2921 3270 -2 2307 109 3 3 chr12 7093587 7093889 -137188600 - AluSp SINE Alu -11 302 1 266 156 234 0 chr12 7094564 7094641 -137187848 + MIR SINE MIR 99 193 -69 677 238 43 5 chr12 7094990 7095175 -137187314 - AluSq SINE Alu 0 313 122 1305 227 18 7 chr12 7095183 7095469 -137187020 - AluSq SINE Alu -24 289 1 1314 214 30 47 chr12 7095472 7095632 -137186857 - AluJo SINE Alu -18 294 140 2080 119 7 4 chr12 7095632 7095910 -137186579 - AluSq SINE Alu -34 279 1 1314 214 30 47 chr12 7095910 7096048 -137186441 - AluJo SINE Alu -172 140 1 2332 93 16 19 chr12 7096717 7096891 -137185598 - AluSx SINE Alu 0 312 138 2223 124 0 3 chr12 7096891 7097198 -137185291 - AluSg SINE Alu -4 306 1 2332 93 16 19 chr12 7097198 7097336 -137185153 - AluSx SINE Alu -174 138 1 227 189 38 19 chr12 7097363 7097416 -137185073 - MIR3 SINE MIR -31 177 124 195 100 0 0 chr12 7098107 7098137 -137184352 + (A)n Simple_repeat Simple_repeat 1 30 0 195 69 0 0 chr12 7098279 7098308 -137184181 + (TA)n Simple_repeat Simple_repeat 2 30 0 393 22 0 0 chr12 7099371 7099417 -137183072 + (CTG)n Simple_repeat Simple_repeat 1 46 0 225 279 0 0 chr12 7099429 7099497 -137182992 + (CTGGGG)n Simple_repeat Simple_repeat 2 69 0 215 146 0 24 chr12 7099496 7099537 -137182952 + (CTG)n Simple_repeat Simple_repeat 1 40 0 * 2293 118 0 16 chr12 7099890 7100205 -137182284 + AluSx SINE Alu 1 310 -2 399 254 25 51 chr12 7100890 7100968 -137181521 + Charlie1b DNA MER1_type 1 77 -446 2184 106 3 16 chr12 7100968 7101271 -137181218 - AluSx SINE Alu -13 299 1 399 254 25 51 chr12 7101271 7101310 -137181179 + Charlie1b DNA MER1_type 77 115 -408 503 167 71 0 chr12 7101310 7101394 -137181095 + AluSg/x SINE Alu 196 285 -27 237 159 0 0 chr12 7101394 7101438 -137181051 + (CA)n Simple_repeat Simple_repeat 1 44 0 1158 171 115 67 chr12 7101519 7101616 -137180873 + Charlie1b DNA MER1_type 149 240 -2521 1726 178 7 3 chr12 7101616 7101908 -137180581 + AluJo SINE Alu 2 294 -18 1158 171 115 67 chr12 7101908 7102166 -137180323 + Charlie1b DNA MER1_type 240 521 -2 183 143 0 0 chr12 7104108 7104143 -137178346 + L2 LINE L2 501 535 -2779 313 346 0 0 chr12 7105041 7105122 -137177367 + L2 LINE L2 3191 3271 -1 196 167 76 61 chr12 7105443 7105509 -137176980 - MER5A DNA MER1_type -23 166 100 233 262 252 37 chr12 7106130 7106237 -137176252 + MIR SINE MIR 21 150 -58 23 0 0 0 chr12 7106555 7106578 -137175911 + AT_rich Low_complexity Low_complexity 1 23 0 393 300 132 11 chr12 7106699 7106889 -137175600 - MIR SINE MIR -1 261 49 266 254 36 0 chr12 7106892 7106947 -137175542 + L3 LINE CR1 1432 1488 -89 2293 81 7 10 chr12 7107488 7107783 -137174706 + AluSx SINE Alu 2 295 -17 604 238 37 6 chr12 7108518 7108682 -137173807 - MIR SINE MIR -45 217 49 449 235 35 35 chr12 7110198 7110313 -137172176 + L2 LINE L2 3193 3307 -6 1577 178 63 14 chr12 7111447 7111734 -137170755 - AluJb SINE Alu -11 301 1 2227 114 7 0 chr12 7111836 7112133 -137170356 + AluSq SINE Alu 1 299 -14 2268 88 27 7 chr12 7112404 7112699 -137169790 + AluSq SINE Alu 1 301 -12 1276 201 10 102 chr12 7113479 7113783 -137168706 + AluJo SINE Alu 1 276 -36 513 0 0 0 chr12 7113789 7113846 -137168643 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 1569 183 67 0 chr12 7113854 7114139 -137168350 + AluJb SINE Alu 9 312 0 2156 105 7 0 chr12 7114482 7114793 -137167696 + AluSx SINE Alu 5 317 0 1865 156 57 0 chr12 7114865 7115148 -137167341 + AluSx SINE Alu 1 299 -13 2172 127 0 0 chr12 7115199 7115490 -137166999 + AluSg SINE Alu 1 291 -19 682 203 198 6 chr12 7115514 7115696 -137166793 - MIR SINE MIR -1 261 45 249 121 0 0 chr12 7116287 7116320 -137166169 + MER91 DNA MER1_type 73 105 -35 1889 146 0 0 chr12 7116540 7116820 -137165669 + AluJo SINE Alu 33 312 0 2197 108 6 19 chr12 7116967 7117281 -137165208 + AluSx SINE Alu 2 311 -1 2265 122 0 0 chr12 7117736 7118030 -137164459 - AluSx SINE Alu -18 294 1 341 267 219 0 chr12 7121563 7121750 -137160739 + L2 LINE L2 3085 3312 -1 2280 93 3 3 chr12 7122096 7122396 -137160093 - AluSq SINE Alu -12 301 2 200 228 43 57 chr12 7122400 7122510 -137159979 - MIR SINE MIR -63 145 65 1133 93 0 0 chr12 7122885 7123025 -137159464 + AluSp/q SINE Alu 164 303 -10 22 0 0 0 chr12 7123684 7123706 -137158783 + AT_rich Low_complexity Low_complexity 1 22 0 371 270 20 53 chr12 7125388 7125540 -137156949 + GA-rich Low_complexity Low_complexity 5 151 0 185 258 76 0 chr12 7128427 7128493 -137153996 + L2 LINE L2 2993 3063 -209 264 193 241 0 chr12 7128585 7128668 -137153821 + L2 LINE L2 3133 3235 -37 2347 109 0 0 chr12 7130442 7130744 -137151745 + AluSq SINE Alu 1 302 -11 257 312 5 58 chr12 7131014 7131203 -137151286 + GA-rich Low_complexity Low_complexity 2 180 0 265 229 0 43 chr12 7131330 7131400 -137151089 + GA-rich Low_complexity Low_complexity 4 70 0 227 206 8 71 chr12 7132133 7132259 -137150230 + (CGGGG)n Simple_repeat Simple_repeat 3 120 0 324 64 0 0 chr12 7132267 7132314 -137150175 + (CTCGG)n Simple_repeat Simple_repeat 5 51 0 852 125 0 29 chr12 7132588 7132724 -137149765 - FLAM_C SINE Alu -11 132 1 497 301 75 45 chr12 7132919 7133276 -137149213 + L2 LINE L2 2771 3134 -179 * 2054 251 113 22 chr12 7133260 7133980 -137148509 + L2 LINE L2 2005 2789 -525 938 137 0 0 chr12 7134086 7134217 -137148272 - AluSg/x SINE Alu -16 296 166 1116 113 0 7 chr12 7134276 7134427 -137148062 - AluSq/x SINE Alu -162 150 1 2358 108 0 0 chr12 7134573 7134880 -137147609 - AluSq SINE Alu -6 307 1 283 286 41 20 chr12 7134957 7135055 -137147434 + L2 LINE L2 3168 3267 -5 1240 119 8 128 chr12 7135648 7135891 -137146598 - AluJb SINE Alu -16 296 83 351 250 22 0 chr12 7135923 7136015 -137146474 - L2 LINE L2 -41 3231 3138 917 141 0 0 chr12 7136154 7136282 -137146207 - FLAM_C SINE Alu -13 130 3 767 237 212 49 chr12 7136304 7136546 -137145943 + L2 LINE L2 1329 1530 -1784 2672 24 7 0 chr12 7136546 7136842 -137145647 - AluY SINE Alu -13 298 1 767 237 212 49 chr12 7136842 7137047 -137145442 + L2 LINE L2 1530 1849 -1465 381 75 0 0 chr12 7137060 7137113 -137145376 - AluY SINE Alu -3 297 245 1526 66 0 6 chr12 7137113 7137295 -137145194 - AluY SINE Alu -130 181 1 1653 146 3 65 chr12 7137316 7137579 -137144910 - AluJo SINE Alu -11 301 60 2460 80 7 0 chr12 7137579 7137880 -137144609 - AluSc SINE Alu -6 303 1 1653 146 3 65 chr12 7137880 7137937 -137144552 - AluJo SINE Alu -252 60 1 2374 109 3 0 chr12 7137944 7138255 -137144234 - AluSx SINE Alu 0 312 1 2125 119 10 0 chr12 7138257 7138551 -137143938 - AluSq SINE Alu -16 297 1 2171 103 13 13 chr12 7138727 7139028 -137143461 + AluSg SINE Alu 1 301 -9 2204 113 10 7 chr12 7139046 7139385 -137143104 + AluY SINE Alu 1 311 0 2109 120 9 22 chr12 7139386 7139702 -137142787 + AluSx SINE Alu 1 312 0 2603 164 64 35 chr12 7139744 7140336 -137142153 + pTR5 LTR ERV1 738 1346 -1092 3460 166 109 28 chr12 7140350 7141110 -137141379 + LTR12 LTR ERV1 5 826 0 378 147 73 0 chr12 7141110 7141178 -137141311 + U6 snRNA snRNA 34 106 -1 1339 208 28 60 chr12 7141199 7141336 -137141153 + AluJo SINE Alu 1 141 -171 2090 119 7 4 chr12 7141336 7141614 -137140875 + AluSq SINE Alu 1 279 -34 1339 208 28 60 chr12 7141614 7141777 -137140712 + AluJo SINE Alu 141 293 -19 2356 109 7 0 chr12 7141777 7142081 -137140408 + AluSg SINE Alu 1 306 -4 1339 208 28 60 chr12 7142081 7142096 -137140393 + AluJo SINE Alu 293 307 -5 2235 101 0 0 chr12 7142101 7142410 -137140079 + AluSg SINE Alu 5 313 0 998 149 60 35 chr12 7142413 7142614 -137139875 + AluJo SINE Alu 87 292 -20 1621 177 13 23 chr12 7142616 7142915 -137139574 + AluJo SINE Alu 1 296 -16 1936 166 3 0 chr12 7142918 7143214 -137139275 + AluJb SINE Alu 1 297 -15 273 287 12 79 chr12 7143216 7143380 -137139109 - L1ME3A LINE L1 -258 5912 5760 1075 207 38 31 chr12 7143613 7143874 -137138615 - L2 LINE L2 -621 2693 2431 562 244 90 65 chr12 7144023 7144076 -137138413 - L1ME3A LINE L1 -562 5600 5550 2228 109 0 0 chr12 7144076 7144387 -137138102 - AluSx SINE Alu 0 311 1 562 244 90 65 chr12 7144387 7144635 -137137854 - L1ME3A LINE L1 -612 5550 5310 2458 93 3 0 chr12 7144635 7144946 -137137543 - AluSx SINE Alu 0 312 1 2177 117 3 13 chr12 7144955 7145253 -137137236 - AluSx SINE Alu -17 295 1 562 244 90 65 chr12 7145253 7145447 -137137042 - L1ME3A LINE L1 -859 5303 5101 28 0 0 0 chr12 7145451 7145479 -137137010 + AT_rich Low_complexity Low_complexity 1 28 0 2317 94 0 10 chr12 7145479 7145778 -137136711 - AluSx SINE Alu -16 296 1 1131 113 0 0 chr12 7145779 7145930 -137136559 - AluSq SINE Alu -16 297 147 390 261 0 0 chr12 7145930 7146022 -137136467 + pTR5 LTR ERV1 743 834 -1604 1191 126 12 0 chr12 7146439 7146606 -137135883 - AluJb SINE Alu -16 296 128 236 164 0 55 chr12 7146634 7146689 -137135800 - FLAM_A SINE Alu 0 133 82 351 250 22 0 chr12 7146721 7146813 -137135676 - L2 LINE L2 -41 3231 3138 882 139 0 8 chr12 7146952 7147081 -137135408 - AluJ SINE Alu -182 130 3 394 227 42 50 chr12 7147106 7147225 -137135264 + L2 LINE L2 1332 1449 -1865 275 200 0 38 chr12 7149107 7149187 -137133302 + CT-rich Low_complexity Low_complexity 4 80 0 215 179 0 0 chr12 7151252 7151291 -137131198 + A-rich Low_complexity Low_complexity 4 42 0 232 288 45 0 chr12 7151906 7151972 -137130517 + MIR SINE MIR 117 185 -77 22 0 0 0 chr12 7153439 7153461 -137129028 + GC_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 7153580 7153611 -137128878 + GC_rich Low_complexity Low_complexity 1 31 0 4163 240 22 13 chr12 7154965 7156196 -137126293 + L1MEc LINE L1 2161 3365 -2850 1630 207 61 2 chr12 7156361 7156757 -137125732 - L1 LINE L1 -885 6680 6262 * 3590 62 10 4 chr12 7156755 7157256 -137125233 - L1MA1 LINE L1 -191 6111 5608 1255 199 17 20 chr12 7157261 7157562 -137124927 - L1 LINE L1 -1302 6263 5964 1243 115 5 29 chr12 7157679 7157888 -137124601 - L1PA12 LINE L1 -77 6091 5888 2822 239 28 20 chr12 7157890 7159155 -137123334 - L1 LINE L1 -4177 3389 2097 222 287 149 0 chr12 7159693 7159787 -137122702 + MER5A DNA MER1_type 9 116 -73 1005 204 9 42 chr12 7159787 7160003 -137122486 + AluJo SINE Alu 85 293 -19 321 234 0 0 chr12 7162588 7162682 -137119807 - L1MA9 LINE L1 0 6312 6219 800 246 21 38 chr12 7165236 7165472 -137117017 + MIR SINE MIR 19 250 -12 492 333 65 13 chr12 7165720 7165951 -137116538 + MIR SINE MIR 19 261 -1 269 241 103 0 chr12 7166690 7166777 -137115712 - MER5A DNA MER1_type -85 104 9 2447 92 0 0 chr12 7167993 7168299 -137114190 - AluY SINE Alu -5 306 1 2427 229 87 42 chr12 7168299 7169129 -137113360 + L1M4 LINE L1 3483 4349 -1797 1092 143 74 18 chr12 7169623 7169840 -137112649 + L1MB8 LINE L1 5935 6163 -15 464 167 0 105 chr12 7170090 7170204 -137112285 - AluY SINE Alu -5 306 205 1399 164 70 64 chr12 7171085 7171525 -137110964 - L1MB4 LINE L1 -2 6178 5736 298 230 30 30 chr12 7171861 7171961 -137110528 + MLT1L LTR MaLR 171 270 -345 282 243 56 19 chr12 7172182 7172289 -137110200 - L1MC4 LINE L1 -16 8026 7916 571 169 16 24 chr12 7176163 7176287 -137106202 - MER5A DNA MER1_type -66 123 1 868 109 122 6 chr12 7177295 7177451 -137105038 - MSTA LTR MaLR 0 428 255 391 228 28 107 chr12 7178228 7178443 -137104046 - MLT1J LTR MaLR -202 309 112 232 303 129 34 chr12 7178758 7179115 -137103374 - L1ME LINE L1 -239 6276 5886 338 268 18 18 chr12 7180137 7180249 -137102240 - L1ME LINE L1 -2962 3578 3467 248 268 14 14 chr12 7180250 7180321 -137102168 + CT-rich Low_complexity Low_complexity 3 73 0 228 152 0 0 chr12 7180581 7180627 -137101862 + Alu SINE Alu 258 303 0 2342 86 26 3 chr12 7180677 7180980 -137101509 - AluY SINE Alu 0 311 2 407 150 36 66 chr12 7180993 7181132 -137101357 - L1ME LINE L1 -4037 2503 2361 2496 68 0 0 chr12 7181132 7181439 -137101050 - AluY SINE Alu -4 307 1 2203 77 0 68 chr12 7181439 7181627 -137100862 - AluSc SINE Alu -8 301 143 2548 28 0 56 chr12 7181627 7181948 -137100541 - AluY SINE Alu -8 303 1 2203 77 0 68 chr12 7181948 7182082 -137100407 - AluSc SINE Alu -166 143 1 407 150 36 66 chr12 7182082 7182108 -137100381 - L1ME LINE L1 -4177 2363 2342 1554 163 0 0 chr12 7182112 7182357 -137100132 - AluSg SINE Alu -65 245 1 975 231 9 14 chr12 7182357 7182573 -137099916 - MER58A DNA MER1_type -8 216 2 331 250 96 0 chr12 7182574 7182678 -137099811 - L1ME LINE L1 -4192 2348 2235 1912 164 0 13 chr12 7182793 7183091 -137099398 - AluJb SINE Alu -18 294 1 2275 101 3 0 chr12 7183102 7183398 -137099091 - AluSq SINE Alu -16 297 1 1255 255 103 12 chr12 7183409 7183915 -137098574 - L1ME LINE L1 -4317 2223 1672 1160 127 6 6 chr12 7183915 7184080 -137098409 - AluSg/x SINE Alu -13 297 133 253 214 114 0 chr12 7184090 7184160 -137098329 - L1ME LINE L1 -4873 1667 1590 2282 120 0 10 chr12 7184161 7184470 -137098019 - AluSq SINE Alu -7 306 1 548 215 132 96 chr12 7184480 7184875 -137097614 - L1ME LINE L1 -5224 1319 911 453 165 0 0 chr12 7185100 7185179 -137097310 + AluJ/FRAM SINE Alu 231 309 -3 344 341 65 0 chr12 7185293 7185431 -137097058 + L2 LINE L2 2917 3063 -209 334 325 8 43 chr12 7185685 7185802 -137096687 - MER5A DNA MER1_type -56 133 21 1044 244 137 57 chr12 7185809 7186305 -137096184 + MLT1E LTR MaLR 1 587 -6 2392 98 3 0 chr12 7187015 7187320 -137095169 + AluSx SINE Alu 1 306 -6 578 189 149 11 chr12 7187329 7187504 -137094985 + Charlie1 DNA MER1_type 1578 1776 -985 1074 190 0 0 chr12 7187504 7187701 -137094788 - AluJb SINE Alu 0 333 137 728 280 33 61 chr12 7187759 7188184 -137094305 - L2 LINE L2 -656 2658 2246 270 277 59 30 chr12 7188971 7189072 -137093417 + L2 LINE L2 3143 3246 -26 230 348 14 22 chr12 7189191 7189329 -137093160 + A-rich Low_complexity Low_complexity 4 140 0 2191 128 0 0 chr12 7190397 7190702 -137091787 - AluSx SINE Alu -7 305 1 251 164 36 36 chr12 7190702 7190746 -137091743 + L2 LINE L2 3221 3267 -5 1849 153 7 3 chr12 7190758 7191046 -137091443 + AluJb SINE Alu 1 289 -23 231 88 0 0 chr12 7192116 7192150 -137090339 + (GA)n Simple_repeat Simple_repeat 1 34 0 536 0 16 0 chr12 7192797 7192861 -137089628 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 441 103 0 0 chr12 7192861 7192919 -137089570 - AluSq SINE Alu -17 295 238 1250 117 6 17 chr12 7192928 7193108 -137089381 - AluSq SINE Alu -134 179 2 756 37 37 30 chr12 7193115 7193249 -137089240 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 2208 92 28 0 chr12 7193249 7193533 -137088956 - AluSx SINE Alu -18 294 3 232 125 10 77 chr12 7193538 7193546 -137088943 + (TCTA)n Simple_repeat Simple_repeat 2 9 -89 2449 88 0 0 chr12 7193546 7193840 -137088649 - AluSx SINE Alu -18 294 1 232 125 10 77 chr12 7193840 7193935 -137088554 + (TCTA)n Simple_repeat Simple_repeat 9 98 0 2204 112 6 10 chr12 7193952 7194265 -137088224 - AluSx SINE Alu 0 312 1 304 304 93 31 chr12 7194270 7194464 -137088025 - L1MEd LINE L1 -4954 1165 960 300 111 0 0 chr12 7194466 7194511 -137087978 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 474 261 154 54 chr12 7194687 7195128 -137087361 - LTR33 LTR ERVL -15 506 22 576 186 10 0 chr12 7195939 7196041 -137086448 + FRAM SINE Alu 56 158 -18 965 126 81 17 chr12 7196194 7196368 -137086121 - MER5A DNA MER1_type -3 186 2 3155 182 31 52 chr12 7196586 7197348 -137085141 - LTR5 LTR ERVK 0 969 224 2416 51 0 10 chr12 7197351 7197643 -137084846 - AluY SINE Alu -10 301 13 1257 171 14 0 chr12 7197647 7197864 -137084625 - LTR5 LTR ERVK -749 220 1 2770 140 139 42 chr12 7198302 7198716 -137083773 - MER51D LTR ERV1 0 657 166 1937 109 0 0 chr12 7198716 7198964 -137083525 - AluSx SINE Alu -64 248 1 2770 140 139 42 chr12 7198964 7199148 -137083341 - MER51D LTR ERV1 -491 166 1 21 0 0 0 chr12 7199848 7199869 -137082620 + AT_rich Low_complexity Low_complexity 1 21 0 805 180 0 0 chr12 7199966 7200088 -137082401 + FLAM_C SINE Alu 7 128 -15 1982 158 0 0 chr12 7200098 7200389 -137082100 - AluJb SINE Alu -21 291 1 30 0 0 0 chr12 7200389 7200419 -137082070 + AT_rich Low_complexity Low_complexity 1 30 0 2160 128 3 0 chr12 7200419 7200715 -137081774 + AluSx SINE Alu 1 297 -15 2274 110 0 0 chr12 7200743 7201043 -137081446 - AluY SINE Alu -11 300 1 2206 131 0 3 chr12 7201051 7201357 -137081132 - AluSx SINE Alu -7 305 1 512 237 66 47 chr12 7201357 7201503 -137080986 - L1ME4a LINE L1 -1 6120 5965 1862 167 52 0 chr12 7201503 7201791 -137080698 - AluJb SINE Alu -9 303 1 512 237 66 47 chr12 7201791 7201901 -137080588 - L1ME4a LINE L1 -156 5965 5859 2121 105 14 10 chr12 7201922 7202216 -137080273 - AluSc SINE Alu -14 295 1 2156 137 7 0 chr12 7202332 7202632 -137079857 - AluSx SINE Alu -10 302 1 2259 91 0 3 chr12 7202686 7203013 -137079476 + AluY SINE Alu 1 326 0 2155 114 0 7 chr12 7203013 7203345 -137079144 + AluSc SINE Alu 1 309 0 270 0 0 0 chr12 7203346 7203376 -137079113 + (CA)n Simple_repeat Simple_repeat 1 30 0 2146 207 12 67 chr12 7203395 7203774 -137078715 + L1MD1 LINE L1 4019 4417 -1729 2003 145 3 43 chr12 7203774 7203918 -137078571 + AluJo SINE Alu 1 149 -163 2506 77 0 0 chr12 7203918 7204218 -137078271 + AluY SINE Alu 1 300 -11 2003 145 3 43 chr12 7204218 7204398 -137078091 + AluJo SINE Alu 149 312 0 2146 207 12 67 chr12 7204398 7204464 -137078025 + L1MD1 LINE L1 4417 4485 -1661 2235 127 7 0 chr12 7204464 7204771 -137077718 + AluSx SINE Alu 1 309 -3 2146 207 12 67 chr12 7204771 7204966 -137077523 + L1MD1 LINE L1 4485 4625 -1521 956 190 0 62 chr12 7204967 7205162 -137077327 + AluJo SINE Alu 125 307 -5 879 143 0 0 chr12 7205200 7205333 -137077156 + AluJb SINE Alu 1 133 -179 321 185 0 0 chr12 7205336 7205401 -137077088 + (CA)n Simple_repeat Simple_repeat 2 66 0 205 300 14 0 chr12 7205406 7205476 -137077013 + (TA)n Simple_repeat Simple_repeat 2 72 0 300 135 0 0 chr12 7205486 7205538 -137076951 - Alu SINE Alu 0 300 249 682 201 47 0 chr12 7205538 7205687 -137076802 + AluSg/x SINE Alu 150 305 -5 4935 145 70 11 chr12 7205693 7206069 -137076420 + L1MD1 LINE L1 5209 5561 -681 2698 42 0 0 chr12 7206069 7206378 -137076111 + AluY SINE Alu 1 309 -2 4935 145 70 11 chr12 7206378 7206982 -137075507 + L1MD1 LINE L1 5561 6239 -3 2305 112 3 0 chr12 7206983 7207287 -137075202 + AluSx SINE Alu 2 306 -6 2370 94 10 0 chr12 7207356 7207664 -137074825 + AluY SINE Alu 1 311 0 404 283 81 66 chr12 7207873 7208234 -137074255 - L1ME LINE L1 -351 5770 5310 1964 144 0 10 chr12 7208394 7208692 -137073797 + AluJb SINE Alu 1 295 -17 2409 84 0 0 chr12 7209074 7209370 -137073119 - AluSx SINE Alu -13 299 4 214 347 85 68 chr12 7209537 7209877 -137072612 - L2 LINE L2 -925 2389 2044 21 0 0 0 chr12 7210622 7210643 -137071846 + AT_rich Low_complexity Low_complexity 1 21 0 1414 156 0 59 chr12 7210645 7210664 -137071825 - AluJo SINE Alu 0 312 293 2379 76 3 58 chr12 7210664 7210994 -137071495 - AluSx SINE Alu 0 312 1 1414 156 0 59 chr12 7210994 7211230 -137071259 - AluJo SINE Alu -19 293 72 1646 159 8 0 chr12 7211301 7211552 -137070937 + AluSx SINE Alu 1 253 -59 2308 100 3 0 chr12 7211581 7211880 -137070609 + AluSp SINE Alu 1 300 -13 333 0 0 0 chr12 7211955 7211992 -137070497 + (TG)n Simple_repeat Simple_repeat 2 38 0 597 146 64 9 chr12 7211992 7212094 -137070395 - AluSg/x SINE Alu -25 284 174 993 166 6 0 chr12 7212096 7212253 -137070236 - FRAM SINE Alu -7 159 2 1245 193 93 32 chr12 7212257 7212537 -137069952 - AluJo SINE Alu -15 297 1 543 293 6 6 chr12 7212667 7212834 -137069655 - L1MC4a LINE L1 -1906 5902 5736 241 271 71 0 chr12 7212836 7212921 -137069568 - L1MC4a LINE L1 -2197 5611 5521 458 285 15 44 chr12 7212944 7213081 -137069408 + MIR SINE MIR 82 214 -48 220 148 0 37 chr12 7213735 7213789 -137068700 + (GGAGA)n Simple_repeat Simple_repeat 1 52 0 768 230 83 44 chr12 7214702 7214906 -137067583 + MIR SINE MIR 51 262 0 235 297 117 0 chr12 7215795 7215906 -137066583 + MIR SINE MIR 23 146 -62 205 290 81 0 chr12 7216010 7216072 -137066417 - MIR SINE MIR 0 262 196 343 266 0 0 chr12 7216103 7216194 -137066295 - MIR SINE MIR -99 109 19 529 154 0 15 chr12 7216839 7216975 -137065514 + (CA)n Simple_repeat Simple_repeat 2 135 0 294 269 0 0 chr12 7216991 7217147 -137065342 + (CA)n Simple_repeat Simple_repeat 1 156 0 695 201 6 0 chr12 7217190 7217369 -137065120 + (CA)n Simple_repeat Simple_repeat 1 180 0 200 221 0 15 chr12 7218109 7218177 -137064312 + G-rich Low_complexity Low_complexity 2 68 0 284 296 11 39 chr12 7218179 7218358 -137064131 + GA-rich Low_complexity Low_complexity 3 176 0 236 323 32 16 chr12 7218884 7219008 -137063481 - MIR SINE MIR -67 141 16 308 314 40 86 chr12 7219127 7219302 -137063187 - MIR SINE MIR -73 189 23 369 0 0 0 chr12 7219999 7220040 -137062449 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr12 7220039 7220061 -137062428 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 261 167 0 0 chr12 7220934 7220988 -137061501 + GA-rich Low_complexity Low_complexity 1 54 0 300 282 0 29 chr12 7221292 7221395 -137061094 + CT-rich Low_complexity Low_complexity 3 102 0 203 103 26 0 chr12 7221896 7221935 -137060554 + CT-rich Low_complexity Low_complexity 2 41 0 238 324 124 14 chr12 7222421 7222566 -137059923 + L3b LINE CR1 1422 1582 -1 182 281 83 73 chr12 7225186 7225282 -137057207 - L2 LINE L2 -29 3284 3188 499 250 42 0 chr12 7227015 7227183 -137055306 + (TGGG)n Simple_repeat Simple_repeat 1 175 0 333 186 0 44 chr12 7227469 7227582 -137054907 + CT-rich Low_complexity Low_complexity 5 112 0 192 77 0 0 chr12 7227640 7227666 -137054823 + (CTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr12 7228021 7228043 -137054446 + GC_rich Low_complexity Low_complexity 1 22 0 211 200 0 0 chr12 7230778 7230823 -137051666 + (CA)n Simple_repeat Simple_repeat 1 45 0 270 275 139 9 chr12 7231233 7231404 -137051085 + MIR SINE MIR 3 198 -64 821 193 21 101 chr12 7231510 7231748 -137050741 - MER20 DNA MER1_type 0 219 1 2281 93 0 6 chr12 7231774 7232085 -137050404 - AluSx SINE Alu -3 309 1 2043 87 0 4 chr12 7232111 7232386 -137050103 + AluSg SINE Alu 37 310 0 589 281 15 39 chr12 7232393 7232596 -137049893 + MIR SINE MIR 61 258 -4 387 306 93 32 chr12 7233660 7233835 -137048654 - L2 LINE L2 -6 3266 3103 2286 86 0 7 chr12 7233835 7234137 -137048352 + AluSp SINE Alu 1 300 -13 387 306 93 32 chr12 7234137 7234272 -137048217 - L2 LINE L2 -169 3103 2937 746 177 13 13 chr12 7234311 7234469 -137048020 + MIR SINE MIR 61 218 -44 2089 109 3 7 chr12 7234482 7234776 -137047713 + AluSq SINE Alu 1 293 -20 255 31 0 0 chr12 7234781 7234813 -137047676 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 1871 130 23 10 chr12 7235130 7235431 -137047058 + AluJb SINE Alu 6 310 -2 402 283 62 14 chr12 7237585 7237730 -137044759 + MIR SINE MIR 103 254 -8 189 107 0 0 chr12 7238515 7238543 -137043946 + (GGA)n Simple_repeat Simple_repeat 3 30 0 189 0 0 0 chr12 7240075 7240096 -137042393 + (CAGGC)n Simple_repeat Simple_repeat 3 23 0 258 301 14 14 chr12 7240928 7241001 -137041488 - L2 LINE L2 0 3272 3200 570 181 16 16 chr12 7241130 7241257 -137041232 + MER104 DNA Tc2 1 127 -53 584 283 12 6 chr12 7241281 7241447 -137041042 - MIR SINE MIR -16 246 80 887 139 8 0 chr12 7241448 7241577 -137040912 + FLAM_C SINE Alu 1 130 -3 562 322 55 15 chr12 7241765 7241967 -137040522 - MER63A DNA MER1_type 0 210 1 2243 105 0 16 chr12 7243275 7243588 -137038901 - AluSx SINE Alu -4 308 1 1798 175 3 3 chr12 7243599 7243902 -137038587 - AluJo SINE Alu -9 303 1 1308 251 60 9 chr12 7243984 7244403 -137038086 - L1MC4 LINE L1 -131 7911 7472 372 287 81 22 chr12 7245459 7245595 -137036894 + MIR3 SINE MIR 39 182 -26 504 200 0 0 chr12 7245795 7245920 -137036569 + (CA)n Simple_repeat Simple_repeat 1 125 0 410 353 8 46 chr12 7246822 7247063 -137035426 - L2 LINE L2 -493 2821 2590 755 193 0 7 chr12 7247113 7247248 -137035241 + AluJo SINE Alu 10 143 -169 2030 146 0 10 chr12 7247249 7247558 -137034931 + AluJb SINE Alu 1 306 -6 433 283 256 33 chr12 7247559 7247958 -137034531 - L2 LINE L2 -789 2525 2038 1754 149 43 0 chr12 7249186 7249343 -137033146 - AluJb SINE Alu -16 296 120 209 33 33 0 chr12 7249343 7249373 -137033116 + (TG)n Simple_repeat Simple_repeat 2 32 0 1754 149 43 0 chr12 7249373 7249497 -137032992 - AluJb SINE Alu -192 120 3 1567 155 14 14 chr12 7253669 7253946 -137028543 + AluJo SINE Alu 16 292 -20 258 299 17 51 chr12 7254422 7254539 -137027950 - MIR SINE MIR -142 120 8 1848 133 13 33 chr12 7256185 7256485 -137026004 + AluJo SINE Alu 1 294 -18 399 318 165 34 chr12 7257051 7257372 -137025117 - L2 LINE L2 -2 3311 2949 187 325 114 44 chr12 7257384 7257498 -137024991 + L3 LINE CR1 1454 1575 -2 900 140 0 22 chr12 7257918 7258054 -137024435 + FLAM_C SINE Alu 1 133 0 2243 74 0 14 chr12 7258827 7259136 -137023353 - AluSc SINE Alu 0 305 1 748 138 0 9 chr12 7261316 7261425 -137021064 - FLAM_C SINE Alu -33 110 3 237 254 0 167 chr12 7262065 7262203 -137020286 - MIR SINE MIR -61 147 33 2391 55 0 0 chr12 7263589 7263880 -137018609 + AluY SINE Alu 1 291 -20 963 100 0 23 chr12 7264614 7264744 -137017745 - FLAM_C SINE Alu -6 127 1 706 226 45 23 chr12 7264746 7264923 -137017566 + MER58A DNA MER1_type 42 222 -2 220 215 0 75 chr12 7266571 7266664 -137015825 + G-rich Low_complexity Low_complexity 4 89 0 26 0 0 0 chr12 7266888 7266914 -137015575 + GC_rich Low_complexity Low_complexity 1 26 0 276 244 108 30 chr12 7269032 7269153 -137013336 - MIR SINE MIR -60 148 23 196 283 17 17 chr12 7273220 7273280 -137009209 + MIR SINE MIR 45 104 -104 1320 113 9 75 chr12 7273284 7273465 -137009024 - AluJo SINE Alu -10 302 135 2272 117 7 0 chr12 7273465 7273772 -137008717 - AluSq SINE Alu -4 309 1 1320 113 9 75 chr12 7273772 7273803 -137008686 - AluJo SINE Alu -177 135 104 296 129 0 17 chr12 7273803 7273863 -137008626 - Alu SINE Alu -257 42 1 431 257 46 0 chr12 7273869 7273978 -137008511 + MIR SINE MIR 134 247 -15 721 275 46 14 chr12 7274023 7274241 -137008248 + MIR SINE MIR 2 226 -36 2229 96 20 3 chr12 7274508 7274800 -137007689 - AluSg SINE Alu -13 297 1 428 314 117 80 chr12 7274889 7275141 -137007348 - L2 LINE L2 -341 2973 2732 1286 184 3 108 chr12 7275141 7275473 -137007016 - AluY SINE Alu -14 297 1 428 314 117 80 chr12 7275473 7275544 -137006945 - L2 LINE L2 -582 2732 2665 2513 80 3 0 chr12 7275544 7275844 -137006645 + AluSp SINE Alu 1 301 -12 428 314 117 80 chr12 7275844 7275989 -137006500 - L2 LINE L2 -649 2665 2527 2482 93 0 0 chr12 7275989 7276299 -137006190 + AluSx SINE Alu 1 310 -2 428 314 117 80 chr12 7276299 7276587 -137005902 - L2 LINE L2 -787 2527 2187 1347 122 102 86 chr12 7276869 7277002 -137005487 + AluSg1 SINE Alu 1 130 -179 2085 94 54 27 chr12 7277002 7277300 -137005189 + AluSx SINE Alu 1 306 -6 1676 81 0 0 chr12 7277302 7277500 -137004989 + AluSx SINE Alu 1 198 -114 1347 122 102 86 chr12 7277500 7277620 -137004869 + AluSg1 SINE Alu 130 265 -44 195 42 0 0 chr12 7277620 7277644 -137004845 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1347 122 102 86 chr12 7277644 7277690 -137004799 + AluSg1 SINE Alu 265 309 0 2217 82 0 0 chr12 7277693 7277961 -137004528 + AluSp SINE Alu 44 311 -2 504 0 0 0 chr12 7278026 7278082 -137004407 + (TA)n Simple_repeat Simple_repeat 1 56 0 1775 94 22 4 chr12 7278137 7278412 -137004077 + L1PB1 LINE L1 5872 6151 0 1863 147 14 7 chr12 7278528 7278821 -137003668 + AluSx SINE Alu 1 295 -17 234 62 0 0 chr12 7278953 7278985 -137003504 + (CTG)n Simple_repeat Simple_repeat 1 32 0 2301 96 0 10 chr12 7279006 7279307 -137003182 + AluSx SINE Alu 1 298 -14 41 14 0 56 chr12 7279401 7279444 -137003045 + AT_rich Low_complexity Low_complexity 1 45 -22 2439 66 0 26 chr12 7279444 7279749 -137002740 + AluY SINE Alu 1 297 -14 667 183 0 9 chr12 7279749 7279864 -137002625 - FLAM_A SINE Alu -15 118 5 1593 154 108 7 chr12 7279864 7280143 -137002346 - AluJo SINE Alu -5 307 1 41 14 0 56 chr12 7280143 7280168 -137002321 + AT_rich Low_complexity Low_complexity 42 67 0 1780 159 3 14 chr12 7280168 7280457 -137002032 - AluJb SINE Alu -26 286 1 693 244 74 33 chr12 7280498 7280616 -137001873 - L1ME3 LINE L1 -1 6161 6049 1684 149 52 17 chr12 7280616 7280904 -137001585 + AluJb SINE Alu 1 298 -14 2648 21 0 0 chr12 7280904 7281227 -137001262 + AluY SINE Alu 1 323 0 693 244 74 33 chr12 7281227 7281348 -137001141 - L1ME3 LINE L1 -112 6050 5910 611 203 182 0 chr12 7281357 7281500 -137000989 + FRAM SINE Alu 1 40 0 566 204 113 50 chr12 7281504 7281648 -137000841 - L1ME3 LINE L1 -252 5912 5748 2108 134 7 0 chr12 7281648 7281938 -137000551 - AluSx SINE Alu -20 292 1 566 204 113 50 chr12 7281938 7282014 -137000475 - L1ME3 LINE L1 -416 5748 5678 357 127 0 0 chr12 7282103 7282158 -137000331 + MER101 LTR ERV1 403 457 -17 1189 194 23 81 chr12 7282158 7282272 -137000217 + AluJo SINE Alu 21 140 -172 2208 76 4 0 chr12 7282272 7282536 -136999953 - AluSp SINE Alu -48 265 1 1189 194 23 81 chr12 7282536 7282731 -136999758 + AluJo SINE Alu 140 312 0 282 223 12 56 chr12 7282748 7282855 -136999634 - L1ME3 LINE L1 -470 5700 5598 269 270 10 40 chr12 7283978 7284078 -136998411 - L2 LINE L2 -967 2347 2251 2307 92 7 0 chr12 7284536 7284829 -136997660 - AluSg SINE Alu -15 295 1 8313 58 7 0 chr12 7285041 7286003 -136996486 - LTR5 LTR ERVK 0 969 1 249 157 0 0 chr12 7286031 7286071 -136996418 + A-rich Low_complexity Low_complexity 1 43 -8 2056 143 3 10 chr12 7286071 7286385 -136996104 + AluSx SINE Alu 1 312 0 586 240 40 23 chr12 7286581 7286756 -136995733 - FRAM SINE Alu 0 176 1 2101 117 3 58 chr12 7286868 7287194 -136995295 + AluSx SINE Alu 1 308 -4 1676 160 56 4 chr12 7287266 7287570 -136994919 - AluJb SINE Alu 0 318 1 320 312 32 32 chr12 7287604 7287761 -136994728 - Tigger7 DNA MER2_type -1016 1471 1315 1915 131 31 0 chr12 7287968 7288258 -136994231 - AluSx SINE Alu -8 304 6 2238 106 7 0 chr12 7288524 7288816 -136993673 - AluSg SINE Alu -16 294 1 698 214 0 40 chr12 7289078 7289251 -136993238 - FRAM SINE Alu 0 166 1 2452 93 0 0 chr12 7289298 7289608 -136992881 - AluSq SINE Alu -3 310 1 333 308 161 0 chr12 7290051 7290181 -136992308 - MIR SINE MIR -71 191 41 257 169 0 101 chr12 7290254 7290343 -136992146 + (CCCCG)n Simple_repeat Simple_repeat 3 82 0 843 173 18 30 chr12 7290989 7291157 -136991332 + FRAM SINE Alu 1 164 -12 2216 114 10 0 chr12 7291234 7291542 -136990947 - AluSx SINE Alu -1 311 1 1019 176 0 0 chr12 7291741 7291900 -136990589 + AluJb SINE Alu 137 295 -17 281 233 33 0 chr12 7291901 7291961 -136990528 - L2 LINE L2 -18 3295 3234 1940 151 23 7 chr12 7291986 7292291 -136990198 + AluJo SINE Alu 1 310 -2 198 246 18 18 chr12 7292319 7292376 -136990113 - L2 LINE L2 -848 2466 2410 2193 113 7 0 chr12 7292385 7292677 -136989812 + AluSq SINE Alu 1 294 -19 203 152 0 0 chr12 7292696 7292729 -136989760 + (CA)n Simple_repeat Simple_repeat 2 34 0 2280 121 0 6 chr12 7292825 7293139 -136989350 + AluSx SINE Alu 1 312 0 1814 164 44 19 chr12 7293497 7293863 -136988626 + THE1C LTR MaLR 1 375 0 1797 178 28 0 chr12 7294164 7294286 -136988203 + AluJb SINE Alu 1 118 -194 192 40 0 0 chr12 7294286 7294311 -136988178 + (CA)n Simple_repeat Simple_repeat 2 26 0 1797 178 28 0 chr12 7294311 7294475 -136988014 + AluJb SINE Alu 118 295 -17 2499 74 3 16 chr12 7294481 7294793 -136987696 + AluSq SINE Alu 1 308 -5 1480 166 35 55 chr12 7294793 7295082 -136987407 + AluJo SINE Alu 1 283 -29 1713 143 66 30 chr12 7295082 7295197 -136987292 + AluSx SINE Alu 1 110 -202 432 0 0 0 chr12 7295197 7295245 -136987244 + (CTA)n Simple_repeat Simple_repeat 1 48 0 1713 143 66 30 chr12 7295245 7295430 -136987059 + AluSx SINE Alu 110 312 0 272 274 35 0 chr12 7295462 7295575 -136986914 + L1M4 LINE L1 4735 4851 -1295 407 309 147 27 chr12 7295585 7295918 -136986571 + L1M4 LINE L1 4877 5249 -897 2415 158 164 8 chr12 7295934 7296423 -136986066 + MLT1F1 LTR MaLR 1 565 -2 1348 148 0 15 chr12 7296436 7296638 -136985851 + AluJo SINE Alu 1 199 -113 1048 109 0 0 chr12 7296639 7296786 -136985703 + AluSg/x SINE Alu 153 299 -13 2403 91 0 0 chr12 7297170 7297467 -136985022 + AluSc SINE Alu 1 297 -12 2427 100 0 0 chr12 7297471 7297772 -136984717 + AluSq SINE Alu 1 301 -12 1982 151 7 10 chr12 7297811 7297979 -136984510 - AluSx SINE Alu -9 303 136 260 0 0 54 chr12 7297979 7298016 -136984473 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1887 108 17 45 chr12 7298016 7298304 -136984185 - AluSg SINE Alu -30 280 1 1982 151 7 10 chr12 7298304 7298438 -136984051 - AluSx SINE Alu -174 138 1 1606 153 0 34 chr12 7298519 7298787 -136983702 + AluJo SINE Alu 2 260 -52 225 244 0 0 chr12 7298822 7298867 -136983622 + MER5A DNA MER1_type 9 53 -136 605 177 0 9 chr12 7299043 7299156 -136983333 + FRAM SINE Alu 1 104 -72 1801 210 78 12 chr12 7299160 7299584 -136982905 + MER66A LTR ERV1 27 478 0 1594 151 68 17 chr12 7299616 7299710 -136982779 - MER51A LTR ERV1 0 634 546 1621 86 70 45 chr12 7299710 7299954 -136982535 - AluSg SINE Alu -6 304 55 1594 151 68 17 chr12 7299954 7300324 -136982165 - MER51A LTR ERV1 -88 546 2 262 208 0 0 chr12 7300325 7300373 -136982116 + AluJo/FLAM SINE Alu 86 133 -169 2611 48 0 22 chr12 7300376 7300692 -136981797 + AluY SINE Alu 3 311 0 2258 110 0 0 chr12 7300860 7301159 -136981330 - AluSx SINE Alu -13 299 1 1229 118 0 0 chr12 7301159 7301320 -136981169 - AluSg/x SINE Alu -18 292 132 2309 78 20 3 chr12 7301320 7301614 -136980875 - AluSq SINE Alu -14 299 1 204 258 15 15 chr12 7301973 7302039 -136980450 + MIR SINE MIR 197 262 0 2119 144 0 6 chr12 7302182 7302495 -136979994 + AluJo SINE Alu 1 311 -1 555 332 18 9 chr12 7302770 7302987 -136979502 - MIR SINE MIR -21 241 23 318 231 128 13 chr12 7303243 7303378 -136979111 + MIR SINE MIR 100 256 -6 240 302 0 0 chr12 7304866 7304929 -136977560 + GA-rich Low_complexity Low_complexity 2 64 0 734 284 62 37 chr12 7305944 7306265 -136976224 - L2 LINE L2 0 3313 2985 203 260 27 14 chr12 7306644 7306717 -136975772 + MIR3 SINE MIR 6 79 -129 2471 176 97 36 chr12 7306902 7307426 -136975063 - MER21A LTR ERV1 0 931 376 953 138 67 119 chr12 7307432 7307496 -136974993 - MER21A LTR ERV1 -668 263 197 2443 92 0 0 chr12 7307496 7307802 -136974687 + AluSx SINE Alu 1 306 -6 1706 65 0 28 chr12 7307811 7308025 -136974464 + AluY SINE Alu 94 301 -10 953 138 67 119 chr12 7308025 7308219 -136974270 - MER21A LTR ERV1 -742 189 9 306 258 53 60 chr12 7308219 7308370 -136974119 + L1MCa LINE L1 1942 2091 -4335 * 367 310 39 35 chr12 7308235 7308438 -136974051 - L1MC5 LINE L1 -182 7779 7576 348 286 57 51 chr12 7308377 7308650 -136973839 + L1MCa LINE L1 1907 2091 -4335 * 47 0 0 0 chr12 7308650 7308697 -136973792 + AT_rich Low_complexity Low_complexity 1 47 0 332 328 0 47 chr12 7309399 7309483 -136973006 - L2 LINE L2 -1 3271 3193 1669 142 39 90 chr12 7309483 7309608 -136972881 + AluJo SINE Alu 1 131 -181 1890 168 3 13 chr12 7309608 7309923 -136972566 + AluJb SINE Alu 1 312 0 1669 142 39 90 chr12 7309923 7310108 -136972381 + AluJo SINE Alu 131 295 -17 332 328 0 47 chr12 7310108 7310151 -136972338 - L2 LINE L2 -79 3193 3150 252 228 215 0 chr12 7310707 7310786 -136971703 + MER20B DNA MER1_type 68 163 -620 1846 159 20 7 chr12 7310909 7311204 -136971285 + AluJo SINE Alu 3 301 -11 1018 136 28 40 chr12 7311373 7311549 -136970940 - AluJo SINE Alu -54 258 85 2380 101 0 0 chr12 7312737 7313044 -136969445 - AluSc SINE Alu -2 307 1 230 222 0 25 chr12 7313740 7313821 -136968668 + (CCG)n Simple_repeat Simple_repeat 1 79 0 213 333 11 11 chr12 7316404 7316491 -136965998 + L3b LINE CR1 1303 1389 -194 2411 42 42 3 chr12 7317535 7317820 -136964669 - AluY SINE Alu -15 296 1 2569 66 0 0 chr12 7317881 7318185 -136964304 + AluSx SINE Alu 1 304 -8 313 218 218 58 chr12 7318345 7318551 -136963938 + MIR SINE MIR 3 241 -21 568 306 31 0 chr12 7319302 7319524 -136962965 + L3b LINE CR1 1190 1418 -165 2310 93 3 3 chr12 7319568 7319880 -136962609 - AluSp SINE Alu -1 312 1 966 119 0 7 chr12 7319898 7320041 -136962448 - FLAM_C SINE Alu -1 142 1 1264 118 165 9 chr12 7320047 7320259 -136962230 - AluSx SINE Alu -67 245 1 1715 181 14 0 chr12 7320293 7320586 -136961903 + AluJb SINE Alu 1 297 -15 200 33 0 33 chr12 7322469 7322499 -136959990 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 336 48 0 0 chr12 7324281 7324323 -136958166 + (TG)n Simple_repeat Simple_repeat 1 42 0 2132 85 20 0 chr12 7325655 7325949 -136956540 - AluSx SINE Alu -12 300 1 248 214 10 61 chr12 7326760 7326911 -136955578 + CT-rich Low_complexity Low_complexity 1 143 0 196 98 24 24 chr12 7326918 7326959 -136955530 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 310 201 12 67 chr12 7327120 7327338 -136955151 + (CGGGG)n Simple_repeat Simple_repeat 1 206 0 25 51 0 0 chr12 7327399 7327438 -136955051 + GC_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr12 7327574 7327603 -136954886 + GC_rich Low_complexity Low_complexity 1 29 0 508 240 116 14 chr12 7329227 7329373 -136953116 + MIR3 SINE MIR 16 176 -32 2236 45 0 21 chr12 7329694 7330011 -136952478 + AluY SINE Alu 1 311 0 198 0 0 0 chr12 7330590 7330612 -136951877 + (A)n Simple_repeat Simple_repeat 1 22 0 2341 99 0 3 chr12 7330612 7330926 -136951563 + AluSq SINE Alu 1 313 0 2399 80 3 3 chr12 7330932 7331244 -136951245 + AluSq SINE Alu 1 312 -1 698 266 76 25 chr12 7332138 7332375 -136950114 + MIR SINE MIR 1 249 -13 1901 118 90 0 chr12 7332391 7332670 -136949819 - AluSg SINE Alu -6 304 1 2085 124 16 0 chr12 7334061 7334368 -136948121 - AluSx SINE Alu 0 312 1 223 239 0 0 chr12 7335601 7335647 -136946842 + CT-rich Low_complexity Low_complexity 2 47 0 489 34 0 0 chr12 7335897 7335956 -136946533 + (CAG)n Simple_repeat Simple_repeat 1 59 0 228 67 0 0 chr12 7337303 7337333 -136945156 + (CGCTG)n Simple_repeat Simple_repeat 4 33 0 2034 129 0 7 chr12 7338681 7338984 -136943505 - AluJb SINE Alu -11 301 1 2151 86 0 33 chr12 7339168 7339470 -136943019 - AluSc SINE Alu -17 292 1 1905 112 0 7 chr12 7339479 7339748 -136942741 - AluSx SINE Alu -45 267 1 190 370 50 42 chr12 7340358 7340477 -136942012 + MIR SINE MIR 20 139 -123 23 0 0 0 chr12 7341406 7341429 -136941060 + AT_rich Low_complexity Low_complexity 1 23 0 1414 160 141 0 chr12 7341772 7342034 -136940455 + AluJo SINE Alu 3 301 -1 2026 108 7 7 chr12 7342204 7342500 -136939989 + AluSg SINE Alu 1 296 -14 536 32 0 0 chr12 7342997 7343059 -136939430 + U7 snRNA snRNA 2 63 0 1802 131 93 44 chr12 7344032 7344375 -136938114 - MER46B DNA MER2_type -1 235 1 1158 286 52 50 chr12 7346362 7346568 -136935921 - L2 LINE L2 -2 3311 3107 2010 138 7 3 chr12 7346568 7346873 -136935616 + AluJo SINE Alu 1 306 -6 1158 286 52 50 chr12 7346873 7347110 -136935379 - L2 LINE L2 -206 3107 2867 831 126 0 0 chr12 7347194 7347313 -136935176 + AluJo/FLAM SINE Alu 11 129 -183 1465 196 47 17 chr12 7347315 7347433 -136935056 + AluJb SINE Alu 3 116 -241 204 67 0 0 chr12 7347433 7347463 -136935026 + (CTA)n Simple_repeat Simple_repeat 1 30 0 1465 196 47 17 chr12 7347463 7347690 -136934799 + AluJb SINE Alu 116 357 0 310 293 43 17 chr12 7347691 7347807 -136934682 + L1M4 LINE L1 3073 3191 -2955 2131 102 0 22 chr12 7347839 7348153 -136934336 + AluSg SINE Alu 1 307 -3 571 236 82 32 chr12 7348609 7348829 -136933660 + MIR SINE MIR 2 232 -30 196 355 0 0 chr12 7348850 7348926 -136933563 - MIR SINE MIR -101 161 86 1925 86 119 0 chr12 7348992 7349260 -136933229 - AluSg SINE Alu 0 300 1 246 289 0 0 chr12 7349263 7349339 -136933150 - L1ME3 LINE L1 -68 6094 6019 311 310 113 7 chr12 7349362 7349504 -136932985 - HAL1 LINE L1 -1 2506 2350 896 277 28 16 chr12 7349936 7350185 -136932304 + MIR SINE MIR 9 260 -2 246 310 78 17 chr12 7351631 7351747 -136930742 - L3 LINE CR1 -125 1452 1330 215 365 151 0 chr12 7352203 7352362 -136930127 - L3 LINE CR1 -809 768 586 601 100 89 0 chr12 7353624 7353714 -136928775 + AluJb SINE Alu 172 269 -43 557 247 25 19 chr12 7353743 7353901 -136928588 + MIR SINE MIR 87 245 -17 223 336 103 54 chr12 7356267 7356618 -136925871 + L2 LINE L2 2899 3266 -6 308 244 26 0 chr12 7356632 7356710 -136925779 - MIR SINE MIR -98 110 31 537 186 150 0 chr12 7357966 7358079 -136924410 + MIR SINE MIR 63 192 -70 272 345 59 8 chr12 7359747 7359866 -136922623 - L2 LINE L2 -5 3267 3143 633 268 141 42 chr12 7360760 7360973 -136921516 - MIR SINE MIR -13 249 16 2133 102 3 13 chr12 7365923 7366228 -136916261 - AluSx SINE Alu -10 302 1 216 188 0 62 chr12 7367204 7367268 -136915221 + G-rich Low_complexity Low_complexity 4 63 0 180 231 77 39 chr12 7368428 7368506 -136913983 - L2 LINE L2 -72 3241 3161 200 259 69 0 chr12 7368532 7368590 -136913899 - MIR SINE MIR -90 172 111 2451 53 3 0 chr12 7368798 7369098 -136913391 + AluSx SINE Alu 1 301 -11 2231 87 0 6 chr12 7370444 7370755 -136911734 - AluSx SINE Alu -3 309 1 1087 79 13 0 chr12 7371246 7371398 -136911091 - AluSg/x SINE Alu -10 302 149 1609 173 13 16 chr12 7372013 7372319 -136910170 - AluJb SINE Alu -7 305 1 1754 157 49 0 chr12 7372360 7372647 -136909842 - AluSx SINE Alu -11 301 1 2173 61 46 0 chr12 7372741 7373021 -136909468 - AluY SINE Alu -18 293 1 736 155 148 7 chr12 7373308 7373463 -136909026 - MER5A DNA MER1_type -10 179 3 2082 100 7 0 chr12 7375622 7375911 -136906578 + AluSx SINE Alu 1 291 -21 196 282 175 0 chr12 7377164 7377267 -136905222 - L2 LINE L2 -57 3215 3095 1622 158 16 41 chr12 7379202 7379518 -136902971 - AluJo SINE Alu 0 312 5 1603 160 7 27 chr12 7379542 7379835 -136902654 - AluJo SINE Alu -25 287 1 255 103 0 0 chr12 7379836 7379875 -136902614 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 465 105 132 0 chr12 7381298 7381374 -136901115 - AluJb SINE Alu -142 170 85 917 128 0 14 chr12 7381376 7381517 -136900972 - AluJb SINE Alu -173 139 1 222 379 73 0 chr12 7381674 7381798 -136900691 - MIR3 SINE MIR -65 143 11 24 32 0 0 chr12 7382106 7382137 -136900352 + AT_rich Low_complexity Low_complexity 1 31 0 561 168 19 0 chr12 7382150 7382257 -136900232 - FRAM SINE Alu -1 175 67 820 149 0 43 chr12 7383039 7383180 -136899309 + AluJo SINE Alu 1 135 -177 1875 134 7 7 chr12 7383762 7384060 -136898429 - AluJo SINE Alu -11 301 4 180 0 0 0 chr12 7384268 7384288 -136898201 + (A)n Simple_repeat Simple_repeat 1 20 0 2284 70 3 16 chr12 7384288 7384602 -136897887 + AluY SINE Alu 1 310 -1 2037 92 3 50 chr12 7384613 7384930 -136897559 + AluSx SINE Alu 6 307 -5 2039 117 13 0 chr12 7384942 7385240 -136897249 + AluSq SINE Alu 1 302 -11 316 243 0 0 chr12 7385240 7385310 -136897179 + Tigger2 DNA MER2_type 2649 2718 0 274 268 0 0 chr12 7385347 7385403 -136897086 - L2 LINE L2 0 3272 3217 21 0 0 0 chr12 7385711 7385732 -136896757 + AT_rich Low_complexity Low_complexity 1 21 0 2206 61 27 10 chr12 7386954 7387248 -136895241 + AluSp SINE Alu 1 299 -14 2283 32 56 3 chr12 7387423 7387707 -136894782 - AluY SINE Alu -12 299 1 1697 148 0 48 chr12 7388000 7388333 -136894156 + AluJo SINE Alu 1 312 0 2323 69 0 0 chr12 7388337 7388628 -136893861 + AluY SINE Alu 1 291 -20 360 0 0 0 chr12 7388636 7388676 -136893813 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4512 165 74 42 chr12 7388676 7388752 -136893737 - Charlie1a DNA MER1_type -1355 1406 1334 2018 128 20 0 chr12 7388752 7389056 -136893433 + AluSx SINE Alu 3 312 0 4512 165 74 42 chr12 7389056 7390025 -136892464 - Charlie1a DNA MER1_type -1427 1334 324 994 117 35 0 chr12 7390027 7390172 -136892317 + AluSx SINE Alu 4 153 -159 962 161 124 0 chr12 7390233 7390265 -136892224 + AluJb SINE Alu 87 114 -198 221 0 0 33 chr12 7390265 7390295 -136892194 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 962 161 124 0 chr12 7390295 7390455 -136892034 + AluJb SINE Alu 114 303 -9 1480 198 32 18 chr12 7390455 7390738 -136891751 - Charlie1a DNA MER1_type -1159 296 10 1161 167 39 10 chr12 7390880 7391084 -136891405 + MER2 DNA MER2_type 1 210 -135 27 29 0 0 chr12 7391084 7391118 -136891371 + AT_rich Low_complexity Low_complexity 1 34 0 289 171 0 0 chr12 7391123 7391164 -136891325 + MER2 DNA MER2_type 304 344 -1 2383 151 15 96 chr12 7391187 7391268 -136891221 - L1MB7 LINE L1 -16 6168 6082 2158 92 14 0 chr12 7391268 7391560 -136890929 + AluSc SINE Alu 2 297 -12 2383 151 15 96 chr12 7391560 7391898 -136890591 - L1MB7 LINE L1 -102 6082 5797 823 179 0 0 chr12 7391898 7392021 -136890468 - FLAM_C SINE Alu -10 123 1 2383 151 15 96 chr12 7392021 7392123 -136890366 - L1MB7 LINE L1 -387 5797 5688 774 146 0 0 chr12 7392123 7392233 -136890256 - FLAM_C SINE Alu -20 123 14 458 88 0 100 chr12 7392235 7392315 -136890174 - L1M4 LINE L1 -493 5691 5620 2087 118 0 0 chr12 7392315 7392611 -136889878 - AluSx SINE Alu -10 302 7 1473 161 47 0 chr12 7392611 7392864 -136889625 - AluJb SINE Alu -46 266 1 190 231 15 62 chr12 7392864 7392929 -136889560 - MER5C DNA MER1_type -225 99 38 416 339 148 32 chr12 7392959 7393306 -136889183 + L2 LINE L2 2100 2405 -909 2247 82 0 3 chr12 7393306 7393598 -136888891 + AluSg SINE Alu 5 295 -15 416 339 148 32 chr12 7393598 7393672 -136888817 + L2 LINE L2 2405 2469 -845 195 100 0 0 chr12 7393672 7393702 -136888787 + (CACCAT)n Simple_repeat Simple_repeat 6 35 0 416 339 148 32 chr12 7393702 7393875 -136888614 + L2 LINE L2 2469 2764 -550 966 238 101 88 chr12 7393886 7394696 -136887793 + L2 LINE L2 2503 3312 -1 283 264 0 42 chr12 7394727 7394799 -136887690 - L2 LINE L2 -7 3306 3238 538 135 0 11 chr12 7395202 7395291 -136887198 - Charlie2 DNA MER1_type -4 2858 2771 1002 186 0 0 chr12 7395298 7395470 -136887019 - AluJb SINE Alu -1 311 140 441 0 0 0 chr12 7395489 7395538 -136886951 + (TG)n Simple_repeat Simple_repeat 2 50 0 1661 130 32 40 chr12 7395538 7395690 -136886799 - AluSx SINE Alu -27 285 134 2289 88 3 0 chr12 7395690 7395995 -136886494 - AluSp SINE Alu -7 306 1 1661 130 32 40 chr12 7395995 7396119 -136886370 - AluSx SINE Alu -178 134 11 1633 196 0 0 chr12 7396139 7396425 -136886064 - AluJo SINE Alu -26 286 1 271 161 306 0 chr12 7396469 7396531 -136885958 - Charlie2a DNA MER1_type -1258 1604 1524 443 306 90 0 chr12 7396943 7397087 -136885402 - MIR3 SINE MIR -35 173 17 189 267 13 80 chr12 7397946 7398021 -136884468 + MIR SINE MIR 37 106 -156 2257 92 0 3 chr12 7398023 7398329 -136884160 - AluY SINE Alu -6 305 1 542 131 161 95 chr12 7398502 7398639 -136883850 + MER69 DNA AcHobo 2 147 -2379 388 183 0 0 chr12 7398633 7398704 -136883785 + MER69 DNA AcHobo 2447 2517 -9 * 193 321 86 25 chr12 7399345 7399426 -136883063 - MIR3 SINE MIR -22 186 101 2272 87 0 0 chr12 7400051 7400349 -136882140 + AluSg SINE Alu 1 298 -12 253 180 0 38 chr12 7400791 7400851 -136881638 - FLAM SINE Alu -9 124 76 2780 16 0 0 chr12 7400963 7401276 -136881213 + AluYb8 SINE Alu 1 313 -5 191 176 0 29 chr12 7401276 7401310 -136881179 + MER5A DNA MER1_type 44 76 -113 955 252 52 20 chr12 7401634 7401884 -136880605 - MIR SINE MIR -2 260 3 273 299 31 16 chr12 7402067 7402194 -136880295 + L2 LINE L2 2687 2815 -499 4748 137 46 28 chr12 7402271 7403257 -136879232 - L1MB7 LINE L1 -47 6137 5133 26 64 0 0 chr12 7403327 7403374 -136879115 + AT_rich Low_complexity Low_complexity 1 47 0 1795 133 0 0 chr12 7403578 7403841 -136878648 - AluSx SINE Alu -49 263 1 2186 73 3 26 chr12 7404370 7404673 -136877816 - AluSq SINE Alu -17 296 1 2386 80 0 0 chr12 7404816 7405117 -136877372 - AluSx SINE Alu -11 301 1 1125 123 0 0 chr12 7405929 7406091 -136876398 + AluSg/x SINE Alu 138 299 -13 233 237 17 34 chr12 7406266 7406325 -136876164 + MIR SINE MIR 79 136 -126 1917 109 4 0 chr12 7406417 7406683 -136875806 - AluSx SINE Alu -45 267 1 779 229 47 0 chr12 7406756 7406926 -136875563 - MER5A DNA MER1_type -1 188 11 258 267 47 0 chr12 7406976 7407062 -136875427 - MIR SINE MIR -10 252 163 223 323 54 31 chr12 7407590 7407720 -136874769 + L2 LINE L2 2911 3043 -229 183 80 0 0 chr12 7407733 7407758 -136874731 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 820 196 14 14 chr12 7407758 7407906 -136874583 - AluJb SINE Alu -32 280 133 904 211 0 0 chr12 7408168 7408329 -136874160 - FRAM SINE Alu -20 156 1 1501 173 3 63 chr12 7408339 7408657 -136873832 - AluJb SINE Alu -13 299 1 1880 157 3 10 chr12 7408685 7408998 -136873491 + AluJb SINE Alu 1 311 -1 243 328 0 0 chr12 7409091 7409152 -136873337 - MIR3 SINE MIR -14 194 134 435 315 18 30 chr12 7409705 7409870 -136872619 + MIR SINE MIR 100 262 0 238 304 122 41 chr12 7409918 7410188 -136872301 + L2 LINE L2 2152 2443 -871 732 298 207 15 chr12 7410252 7410949 -136871540 - L2 LINE L2 0 3272 2431 372 291 116 63 chr12 7410972 7411385 -136871104 + L2 LINE L2 2521 2955 -359 2058 86 6 48 chr12 7411922 7412236 -136870253 + AluSc SINE Alu 1 301 -8 594 178 30 54 chr12 7412245 7412445 -136870044 - MER112 DNA MER1_type 0 260 1 1270 169 92 18 chr12 7413421 7413587 -136868902 - AluJb SINE Alu -15 297 102 2099 132 0 0 chr12 7413587 7413898 -136868591 - AluSx SINE Alu -1 311 1 1270 169 92 18 chr12 7413898 7414004 -136868485 - AluJb SINE Alu -210 102 5 470 328 64 12 chr12 7414643 7414814 -136867675 - MIR SINE MIR -80 182 3 23 0 0 0 chr12 7416192 7416215 -136866274 + GC_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr12 7416507 7416539 -136865950 + AT_rich Low_complexity Low_complexity 1 32 0 272 246 18 0 chr12 7416675 7416732 -136865757 - L2 LINE L2 -12 3301 3244 294 326 120 11 chr12 7416948 7417132 -136865357 - MIR SINE MIR -40 222 19 1717 157 13 23 chr12 7417402 7417702 -136864787 + AluJb SINE Alu 1 297 -15 1468 85 0 10 chr12 7417714 7417914 -136864575 + AluSq SINE Alu 21 218 -95 1460 148 83 105 chr12 7417916 7418374 -136864115 - LTR7 LTR ERV1 -2 448 1 655 81 0 0 chr12 7418375 7418462 -136864027 + AluSq SINE Alu 215 301 -12 2192 113 0 0 chr12 7418462 7418762 -136863727 + AluSx SINE Alu 1 300 -12 245 163 61 0 chr12 7418772 7418821 -136863668 + Tigger3(Golem) DNA MER2_type 2568 2619 -410 3447 159 36 62 chr12 7418837 7418884 -136863605 + LTR8A LTR ERV1 34 81 -646 1905 129 14 3 chr12 7418884 7419170 -136863319 - AluSx SINE Alu -23 289 1 3447 159 36 62 chr12 7419170 7419834 -136862655 + LTR8A LTR ERV1 81 727 0 1550 115 3 92 chr12 7419834 7419979 -136862510 + Tigger3(Golem) DNA MER2_type 2617 2723 -305 2190 81 10 10 chr12 7419979 7420277 -136862212 - AluSp SINE Alu -15 298 1 1550 115 3 92 chr12 7420277 7420436 -136862053 + Tigger3(Golem) DNA MER2_type 2723 2894 -134 4143 142 63 8 chr12 7420442 7421109 -136861380 + MER72 LTR ERV1 5 708 -14 3755 168 31 0 chr12 7421109 7421805 -136860684 + ERVL-B1 LTR ERVL 627 1390 -4374 592 227 8 0 chr12 7421805 7421937 -136860552 + FLAM_C SINE Alu 1 133 -10 1977 98 9 60 chr12 7421945 7422262 -136860227 + AluSx SINE Alu 1 301 -11 1838 133 20 25 chr12 7422278 7422625 -136859864 - MER4A LTR ERV1 0 664 261 618 84 53 21 chr12 7422625 7422720 -136859769 - MER4A LTR ERV1 -566 98 1 2050 123 17 0 chr12 7422729 7423031 -136859458 - AluSx SINE Alu -5 307 1 2237 64 3 0 chr12 7423045 7423363 -136859126 - AluY SINE Alu 0 319 1 6840 93 64 14 chr12 7423363 7424457 -136858032 - MER4-int LTR ERV1 -1283 5315 4167 2161 104 7 0 chr12 7424472 7424769 -136857720 - AluSp SINE Alu -14 299 1 1332 144 0 111 chr12 7424773 7424886 -136857603 + ERVL-B1 LTR ERVL 2583 2650 -3114 1422 138 8 175 chr12 7424886 7425241 -136857248 - AluJb SINE Alu -16 296 1 1332 144 0 111 chr12 7425241 7425397 -136857092 + ERVL-B1 LTR ERVL 2650 2822 -2942 3352 151 14 35 chr12 7425442 7425469 -136857020 + ERVL-B1 LTR ERVL 2796 2822 -2942 2241 79 3 0 chr12 7425469 7425761 -136856728 - AluSg SINE Alu -17 293 1 3352 151 14 35 chr12 7425761 7426269 -136856220 + ERVL-B1 LTR ERVL 2822 3321 -2443 1741 148 0 59 chr12 7426269 7426593 -136855896 - AluJb SINE Alu -7 305 1 3352 151 14 35 chr12 7426593 7426619 -136855870 + ERVL-B1 LTR ERVL 3321 3346 -2418 2233 62 0 34 chr12 7426624 7426956 -136855533 - AluY SINE Alu 0 322 1 1667 143 0 26 chr12 7426995 7427228 -136855261 + ERVL-B1 LTR ERVL 3334 3561 -2203 2420 60 3 0 chr12 7427228 7427528 -136854961 + AluSp SINE Alu 1 301 -12 1667 143 0 26 chr12 7427528 7427559 -136854930 + ERVL-B1 LTR ERVL 3561 3591 -2173 8066 177 65 18 chr12 7427560 7429160 -136853329 - MER52A LTR ERV1 0 1755 1 1058 165 110 0 chr12 7429160 7429360 -136853129 + ERVL-B1 LTR ERVL 3589 3810 -1954 22 0 0 0 chr12 7429360 7429382 -136853107 + AT_rich Low_complexity Low_complexity 1 22 0 1925 164 6 3 chr12 7429826 7430138 -136852351 - LTR26 LTR ERV1 0 603 291 240 103 179 0 chr12 7430211 7430250 -136852239 - LTR26 LTR ERV1 -269 334 289 244 139 23 0 chr12 7430266 7430309 -136852180 - LTR26 LTR ERV1 -269 334 291 226 67 0 0 chr12 7430417 7430447 -136852042 - LTR26 LTR ERV1 -283 320 291 232 67 0 0 chr12 7430747 7430777 -136851712 - LTR26 LTR ERV1 -283 320 291 396 154 0 110 chr12 7430911 7431002 -136851487 - LTR26 LTR ERV1 -283 320 240 827 170 0 27 chr12 7431003 7431150 -136851339 - FLAM_C SINE Alu 0 143 1 1295 142 50 0 chr12 7431150 7431368 -136851121 - LTR26 LTR ERV1 -355 248 20 465 206 28 0 chr12 7431369 7431476 -136851013 - FLAM_A SINE Alu -21 121 12 11415 149 18 43 chr12 7431485 7433092 -136849397 + ERVL-B1 LTR ERVL 3794 5408 -356 263 152 0 106 chr12 7433092 7433158 -136849331 - AluJb SINE Alu -166 136 78 11415 149 18 43 chr12 7433158 7433500 -136848989 + ERVL-B1 LTR ERVL 5408 5757 -7 1423 242 85 0 chr12 7433500 7433830 -136848659 + MLT2B1 LTR ERVL 1 358 -162 1081 87 12 17 chr12 7433842 7434014 -136848475 + HSMAR2 DNA Mariner 1 171 -1131 3762 153 24 128 chr12 7434561 7436098 -136846391 + pTR5 LTR ERV1 743 2606 0 714 236 21 37 chr12 7436938 7437179 -136845310 - L1M4 LINE L1 -868 5278 5042 1525 158 12 67 chr12 7437192 7437363 -136845126 - AluSq SINE Alu -1 312 166 2093 50 0 8 chr12 7437363 7437625 -136844864 - AluY SINE Alu -51 260 1 1525 158 12 67 chr12 7437625 7437783 -136844706 - AluSq SINE Alu -147 166 1 415 289 73 113 chr12 7439126 7439262 -136843227 - HAL1b LINE L1 -993 355 215 198 91 0 0 chr12 7439262 7439295 -136843194 + (TA)n Simple_repeat Simple_repeat 2 34 0 2175 101 0 0 chr12 7439296 7439583 -136842906 - AluSx SINE Alu -21 291 5 415 289 73 113 chr12 7439583 7439814 -136842675 - HAL1b LINE L1 -1132 216 1 3747 175 20 1 chr12 7439997 7440482 -136842007 - L1MC3 LINE L1 0 7785 7282 2017 121 0 19 chr12 7440482 7440796 -136841693 - AluSg SINE Alu -2 308 1 3747 175 20 1 chr12 7440796 7441007 -136841482 - L1MC3 LINE L1 -503 7282 7076 233 200 0 0 chr12 7442056 7442096 -136840393 - Charlie8 DNA MER1_type -1009 1408 1369 272 200 31 0 chr12 7442173 7442238 -136840251 - Charlie8 DNA MER1_type -1922 495 429 2384 77 0 0 chr12 7442238 7442537 -136839952 - AluSx SINE Alu -13 299 1 2418 165 44 2 chr12 7442538 7442945 -136839544 - MSTB LTR MaLR -2 424 1 1114 103 33 27 chr12 7442945 7443129 -136839360 + L1PA16 LINE L1 5981 6165 -1 435 270 56 8 chr12 7443486 7443612 -136838877 + L2 LINE L2 3141 3272 0 718 228 220 20 chr12 7444084 7444334 -136838155 + MLT1J1 LTR MaLR 1 300 -146 706 177 0 15 chr12 7444405 7444535 -136837954 + FLAM_C SINE Alu 4 131 -2 608 245 211 56 chr12 7444947 7445270 -136837219 - MLT1G LTR MaLR -10 585 213 240 111 0 0 chr12 7445282 7445318 -136837171 + (TTCCC)n Simple_repeat Simple_repeat 2 37 0 2011 102 14 0 chr12 7445318 7445601 -136836888 - AluY SINE Alu -4 307 21 1078 104 7 7 chr12 7445602 7445756 -136836733 - AluSq SINE Alu -159 154 1 222 91 0 0 chr12 7445777 7445810 -136836679 + (TCTCC)n Simple_repeat Simple_repeat 5 37 0 659 201 32 39 chr12 7445831 7445985 -136836504 - MLT1G LTR MaLR -420 170 18 2352 58 0 16 chr12 7445985 7446295 -136836194 - AluY SINE Alu -6 305 1 19414 174 34 15 chr12 7446303 7446793 -136835696 - L1PA13 LINE L1 -1 6865 6386 1974 108 7 3 chr12 7446793 7447088 -136835401 - AluSq SINE Alu -17 296 1 19414 174 34 15 chr12 7447088 7447214 -136835275 - L1PA13 LINE L1 -480 6386 6264 1718 157 3 23 chr12 7447214 7447519 -136834970 - AluSx SINE Alu -13 299 1 19414 174 34 15 chr12 7447519 7451134 -136831355 - L1PA13 LINE L1 -602 6264 2720 2625 42 0 0 chr12 7451134 7451445 -136831044 + AluY SINE Alu 1 311 0 19414 174 34 15 chr12 7451445 7451946 -136830543 - L1PA13 LINE L1 -4146 2720 2230 1882 167 3 0 chr12 7451946 7452257 -136830232 - AluSx SINE Alu 0 312 1 19414 174 34 15 chr12 7452257 7452570 -136829919 - L1PA13 LINE L1 -4636 2230 1736 537 152 11 0 chr12 7452682 7452774 -136829715 + L1PA12 LINE L1 103 195 -7386 1767 163 10 0 chr12 7453179 7453468 -136829021 - AluJb SINE Alu -20 292 1 1795 159 0 23 chr12 7454162 7454470 -136828019 - AluJo SINE Alu -11 301 1 1463 137 60 12 chr12 7454496 7454745 -136827744 - AluJo SINE Alu -50 262 2 568 237 30 106 chr12 7454989 7455187 -136827302 - MIR SINE MIR -13 249 67 815 255 102 91 chr12 7455255 7455635 -136826854 - LTR67 LTR ERVL 0 557 168 2415 155 73 140 chr12 7455635 7456414 -136826075 + LTR8A LTR ERV1 1 727 0 815 255 102 91 chr12 7456414 7456562 -136825927 - LTR67 LTR ERVL -389 168 23 264 354 19 21 chr12 7456698 7456954 -136825535 - MIR SINE MIR -19 243 23 289 196 36 0 chr12 7457018 7457074 -136825415 + MER46C DNA MER2_type 6 63 -275 851 146 95 0 chr12 7457077 7457235 -136825254 - AluJb SINE Alu -22 290 118 764 222 73 69 chr12 7457237 7457512 -136824977 + MER46C DNA MER2_type 58 333 -5 1800 144 3 7 chr12 7459306 7459605 -136822884 + AluJo SINE Alu 1 298 -14 384 299 94 35 chr12 7460599 7460800 -136821689 - MIR SINE MIR -1 261 49 1639 152 0 31 chr12 7461061 7461350 -136821139 + AluSx SINE Alu 1 280 -32 21 36 0 0 chr12 7461828 7461856 -136820633 + AT_rich Low_complexity Low_complexity 1 28 0 999 159 75 31 chr12 7461862 7462089 -136820400 - L1PB2 LINE L1 0 6151 5915 1530 184 0 46 chr12 7462683 7462988 -136819501 - AluJo SINE Alu -21 291 1 604 183 7 58 chr12 7463367 7463504 -136818985 + FLAM_A SINE Alu 2 131 -2 236 333 35 0 chr12 7465281 7465368 -136817121 - L3 LINE CR1 -27 1550 1461 396 296 99 29 chr12 7466345 7466517 -136815972 - MIR SINE MIR -57 205 22 321 118 0 0 chr12 7468601 7468652 -136813837 + (A)n Simple_repeat Simple_repeat 1 51 0 1135 143 5 21 chr12 7468675 7468864 -136813625 + AluJo SINE Alu 12 197 -115 395 279 43 57 chr12 7668932 7669072 -136613417 + L2 LINE L2 3176 3313 0 465 224 52 9 chr12 7669438 7669554 -136612935 - MLT1I LTR MaLR 0 409 289 299 230 14 14 chr12 7669630 7669704 -136612785 - MLT1J2 LTR MaLR -277 173 100 2158 95 95 104 chr12 7669735 7670167 -136612322 + MSTA LTR MaLR 1 428 0 328 62 31 47 chr12 7670240 7670304 -136612185 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 780 255 0 0 chr12 7670323 7670480 -136612009 - AluJb SINE Alu -20 292 136 342 310 64 32 chr12 7670620 7670807 -136611682 + MIR SINE MIR 65 257 -5 2111 124 0 0 chr12 7671177 7671459 -136611030 - AluSx SINE Alu -2 310 29 814 212 18 12 chr12 7671472 7671642 -136610847 + MER5B DNA MER1_type 8 178 0 1160 284 167 7 chr12 7671644 7672080 -136610409 + L2 LINE L2 2804 3309 -4 449 263 127 0 chr12 7672447 7672565 -136609924 + MIR SINE MIR 28 160 -102 216 335 82 6 chr12 7672751 7672909 -136609580 + L2 LINE L2 1555 1724 -1590 1298 177 9 0 chr12 7672954 7673180 -136609309 - AluJo SINE Alu 0 312 85 776 348 71 40 chr12 7673186 7673767 -136608722 + L2 LINE L2 1774 2372 -942 431 295 8 8 chr12 7673772 7673894 -136608595 + L2 LINE L2 3191 3312 -1 364 273 84 35 chr12 7674088 7674231 -136608258 + MIR SINE MIR 105 254 -8 282 271 124 40 chr12 7674510 7674674 -136607815 - MIR SINE MIR -56 206 30 403 256 176 47 chr12 7675286 7675643 -136606846 - L1MC5 LINE L1 -144 7898 7522 266 256 49 0 chr12 7675691 7675773 -136606716 + L1ME LINE L1 5510 5595 -526 516 279 294 0 chr12 7675804 7676120 -136606369 - L1MC4 LINE L1 -548 7494 7086 42445 41 5 1 chr12 7676215 7682347 -136600142 - L1PA2 LINE L1 0 6155 4 1070 252 39 19 chr12 7682358 7682703 -136599786 - L1MC4 LINE L1 -884 6924 6565 36 0 0 0 chr12 7682703 7682739 -136599750 + AT_rich Low_complexity Low_complexity 1 36 0 432 249 73 4 chr12 7682739 7682910 -136599579 - L1MC4 LINE L1 -784 5362 5211 1211 232 61 7 chr12 7683091 7683401 -136599088 - MER46C DNA MER2_type -10 328 2 2474 100 0 0 chr12 7683446 7683755 -136598734 - AluY SINE Alu 0 311 3 3718 86 125 4 chr12 7684027 7684571 -136597918 - LTR66 LTR ERVL 0 610 1 1729 181 0 14 chr12 7684744 7685050 -136597439 - AluJb SINE Alu 0 312 12 2014 141 0 3 chr12 7685155 7685487 -136597002 - AluSx SINE Alu 0 331 1 2092 115 0 44 chr12 7686081 7686278 -136596211 - AluSx SINE Alu 0 321 141 2505 89 0 3 chr12 7686278 7686591 -136595898 - AluSp SINE Alu -1 312 1 2092 115 0 44 chr12 7686591 7686727 -136595762 - AluSx SINE Alu -180 141 1 621 88 0 0 chr12 7686727 7686818 -136595671 + MER2 DNA MER2_type 120 210 -135 21 0 0 0 chr12 7686841 7686862 -136595627 + AT_rich Low_complexity Low_complexity 1 21 0 452 321 82 25 chr12 7686939 7687257 -136595232 - L2 LINE L2 -1016 2298 1963 200 286 14 54 chr12 7690684 7690831 -136591658 + GA-rich Low_complexity Low_complexity 5 145 0 631 284 68 16 chr12 7693238 7693428 -136589061 + MIR SINE MIR 51 250 -12 297 225 28 0 chr12 7696410 7696481 -136586008 + MIR SINE MIR 43 115 -93 360 0 0 0 chr12 7697024 7697064 -136585425 + (TG)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr12 7697063 7697090 -136585399 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 237 319 118 21 chr12 7697368 7697512 -136584977 + L2 LINE L2 2328 2485 -829 315 0 0 0 chr12 7697526 7697561 -136584928 + (CA)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 7697561 7697585 -136584904 + (CCA)n Simple_repeat Simple_repeat 3 26 0 801 240 112 0 chr12 7697617 7697859 -136584630 + MER33 DNA MER1_type 1 269 -55 294 314 95 45 chr12 7697871 7697993 -136584496 + L2 LINE L2 2511 2626 -688 859 143 8 15 chr12 7697993 7698126 -136584363 - FLAM_C SINE Alu 0 133 2 294 314 95 45 chr12 7698126 7698245 -136584244 + L2 LINE L2 2626 2764 -550 2041 152 0 0 chr12 7698871 7699173 -136583316 + AluSx SINE Alu 1 302 -10 273 98 0 0 chr12 7701959 7702000 -136580489 + (CA)n Simple_repeat Simple_repeat 1 41 0 2274 111 0 7 chr12 7703020 7703326 -136579163 - AluSx SINE Alu 0 312 9 261 139 0 0 chr12 7705139 7705182 -136577307 + (TTC)n Simple_repeat Simple_repeat 3 45 0 687 115 0 0 chr12 7705197 7705293 -136577196 - U6 snRNA snRNA -10 97 2 192 308 0 0 chr12 7705646 7705698 -136576791 + MIR SINE MIR 79 130 -132 2017 211 84 16 chr12 7706688 7707190 -136575299 + MLT1F LTR MaLR 1 536 -6 2239 127 102 13 chr12 7708001 7708394 -136574095 + MSTA LTR MaLR 1 428 0 314 360 131 0 chr12 7708884 7709059 -136573430 - L2 LINE L2 -50 3222 3025 541 226 0 9 chr12 7709148 7709263 -136573226 - MIR SINE MIR -110 152 39 775 216 119 10 chr12 7709284 7709478 -136573011 - MER20 DNA MER1_type -4 215 1 834 292 20 20 chr12 7709523 7709773 -136572716 - MIR SINE MIR -11 251 2 215 329 68 44 chr12 7709822 7710071 -136572418 - L2 LINE L2 -401 2913 2659 457 225 17 67 chr12 7711153 7711273 -136571216 - MER81 DNA DNA 0 114 1 553 178 0 9 chr12 7711387 7711494 -136570995 - Charlie1 DNA MER1_type -33 2728 2623 * 822 219 47 21 chr12 7711481 7711714 -136570775 - Charlie1 DNA MER1_type -2522 239 1 486 288 92 27 chr12 7711714 7711826 -136570663 - L1MEc LINE L1 -4332 2389 2286 2857 143 106 33 chr12 7711826 7712190 -136570299 - MER1A DNA MER1_type -2173 527 116 207 0 0 0 chr12 7712190 7712213 -136570276 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2857 143 106 33 chr12 7712213 7712339 -136570150 - MER1A DNA MER1_type -2584 116 1 486 288 92 27 chr12 7712339 7712521 -136569968 - L1MEc LINE L1 -4435 2286 2076 880 197 0 0 chr12 7712522 7712669 -136569820 - AluJb SINE Alu -27 285 139 719 230 104 49 chr12 7712672 7713001 -136569488 - L1MEc LINE L1 -4529 2011 1682 609 212 9 0 chr12 7713392 7713505 -136568984 - MER81 DNA DNA 0 114 1 24 0 0 0 chr12 7715077 7715101 -136567388 + GC_rich Low_complexity Low_complexity 1 24 0 247 314 88 25 chr12 7716212 7716371 -136566118 + MIR SINE MIR 30 198 -64 243 0 0 0 chr12 7716615 7716642 -136565847 + (A)n Simple_repeat Simple_repeat 1 27 0 1765 296 80 38 chr12 7716828 7717414 -136565075 - L2 LINE L2 -2 3311 2751 2324 84 11 0 chr12 7717414 7717729 -136564760 - AluSc SINE Alu 0 318 1 1765 296 80 38 chr12 7717729 7718311 -136564178 - L2 LINE L2 -562 2751 2091 1541 169 28 0 chr12 7718438 7718692 -136563797 + AluJo SINE Alu 22 282 -30 270 301 0 46 chr12 7720342 7720495 -136561994 + CT-rich Low_complexity Low_complexity 5 150 0 183 80 0 0 chr12 7720496 7720521 -136561968 + (T)n Simple_repeat Simple_repeat 1 25 0 275 319 11 0 chr12 7720532 7720626 -136561863 + CT-rich Low_complexity Low_complexity 1 95 0 401 285 40 75 chr12 7721133 7721333 -136561156 - MIR3 SINE MIR -7 201 9 193 312 21 54 chr12 7721375 7721468 -136561021 + MIR3 SINE MIR 12 101 -107 714 189 137 16 chr12 7721547 7721737 -136560752 + MER58A DNA MER1_type 3 215 -9 2417 72 16 20 chr12 7721738 7722042 -136560447 + AluSg SINE Alu 1 303 -7 309 314 110 8 chr12 7722223 7722341 -136560148 + MIR SINE MIR 133 262 0 255 152 0 0 chr12 7723133 7723179 -136559310 + (TG)n Simple_repeat Simple_repeat 2 47 0 543 381 77 21 chr12 7723339 7723946 -136558543 + L2 LINE L2 2140 2780 -534 722 113 0 0 chr12 7723949 7724046 -136558443 + AluJ/FLAM SINE Alu 2 98 -214 1151 137 0 0 chr12 7724054 7724215 -136558274 + FRAM SINE Alu 15 175 -1 683 258 85 29 chr12 7724818 7725148 -136557341 + L1ME LINE L1 5278 5629 -492 327 222 133 22 chr12 7725206 7725341 -136557148 - L1MC4 LINE L1 -1 8041 7892 4694 231 88 55 chr12 7725483 7727727 -136554762 - L1ME2 LINE L1 -10 6154 3806 2260 94 33 0 chr12 7727727 7728026 -136554463 - AluSc SINE Alu 0 309 1 4694 231 88 55 chr12 7728026 7728524 -136553965 - L1ME2 LINE L1 -2358 3806 3326 2056 112 4 4 chr12 7728529 7728797 -136553692 + AluSp SINE Alu 14 281 -32 531 0 0 0 chr12 7728799 7728858 -136553631 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 305 286 77 11 chr12 7732060 7732151 -136550338 - L2 LINE L2 -14 3258 3162 365 219 134 63 chr12 7732364 7732416 -136550073 - L1ME4a LINE L1 -33 6088 6041 2098 145 10 3 chr12 7732416 7732726 -136549763 + AluJb SINE Alu 1 312 0 365 219 134 63 chr12 7732726 7732911 -136549578 - L1ME4a LINE L1 -80 6041 5834 766 275 45 38 chr12 7732914 7733201 -136549288 + MARNA DNA Mariner 129 417 -169 955 240 33 8 chr12 7733294 7733536 -136548953 - MIR SINE MIR 0 262 15 198 0 0 0 chr12 7733730 7733752 -136548737 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1643 175 41 0 chr12 7733816 7734085 -136548404 - AluJo SINE Alu -30 282 3 416 246 173 11 chr12 7735238 7735373 -136547116 + MER5B DNA MER1_type 17 188 -1 192 40 0 0 chr12 7739064 7739089 -136543400 + (CTGGGG)n Simple_repeat Simple_repeat 2 26 0 249 33 0 0 chr12 7739458 7739488 -136543001 + (TG)n Simple_repeat Simple_repeat 1 30 0 354 336 153 23 chr12 7740439 7740877 -136541612 + L2 LINE L2 2181 2675 -639 342 260 55 0 chr12 7740880 7741015 -136541474 + (CCTG)n Simple_repeat Simple_repeat 1 142 0 444 274 246 28 chr12 7741205 7741563 -136540926 + L2 LINE L2 2827 3262 -10 247 235 204 15 chr12 7744346 7744478 -136538011 + MIR SINE MIR 18 174 -88 189 291 0 18 chr12 7744680 7744735 -136537754 + MIR SINE MIR 1 54 -208 1211 117 0 0 chr12 7744881 7745043 -136537446 - AluSp SINE Alu -18 295 134 2251 87 20 7 chr12 7745044 7745342 -136537147 - AluY SINE Alu -9 302 1 200 100 25 0 chr12 7746371 7746411 -136536078 + (CA)n Simple_repeat Simple_repeat 1 41 0 221 0 35 0 chr12 7746411 7746440 -136536049 + (CAG)n Simple_repeat Simple_repeat 1 30 0 607 173 7 65 chr12 7747601 7747740 -136534749 + FLAM_A SINE Alu 11 141 -1 41 66 0 0 chr12 7747763 7747839 -136534650 + AT_rich Low_complexity Low_complexity 1 76 0 2005 155 0 3 chr12 7747889 7748186 -136534303 + AluJo SINE Alu 1 296 -16 4462 256 102 52 chr12 7748196 7748604 -136533885 - HAL1 LINE L1 -56 2451 2065 216 0 0 0 chr12 7748604 7748628 -136533861 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4462 256 102 52 chr12 7748628 7749789 -136532700 - HAL1 LINE L1 -442 2065 963 2301 97 3 10 chr12 7749789 7750089 -136532400 + AluSx SINE Alu 1 298 -14 4462 256 102 52 chr12 7750089 7750390 -136532099 - HAL1 LINE L1 -1544 963 678 3342 171 36 3 chr12 7750390 7750976 -136531513 - MER6A DNA MER2_type 0 605 1 4462 256 102 52 chr12 7750976 7751433 -136531056 - HAL1 LINE L1 -1829 678 6 467 219 67 0 chr12 7751667 7751772 -136530717 + L2 LINE L2 3161 3272 0 320 287 74 25 chr12 7751924 7752046 -136530443 - MIR SINE MIR -65 143 16 205 228 53 18 chr12 7752484 7752541 -136529948 - L2 LINE L2 -536 2778 2720 350 342 0 27 chr12 7752852 7752963 -136529526 - L2 LINE L2 -17 3255 3148 481 269 45 0 chr12 7753605 7753761 -136528728 - Charlie8 DNA MER1_type -2159 258 96 1314 146 10 5 chr12 7753789 7753994 -136528495 + AluJo SINE Alu 1 206 -106 632 130 19 9 chr12 7754107 7754215 -136528274 - AluSq/x SINE Alu -203 110 2 757 310 98 9 chr12 7754218 7754566 -136527923 - L1MC/D LINE L1 -1984 5824 5446 263 280 67 0 chr12 7754598 7754673 -136527816 - Charlie8 DNA MER1_type -2331 86 7 2155 97 0 94 chr12 7755473 7755814 -136526675 - AluSq SINE Alu -4 309 1 2695 171 88 3 chr12 7755814 7756382 -136526107 - L1MB7 LINE L1 -47 6137 5522 2564 48 0 13 chr12 7756428 7756742 -136525747 - AluY SINE Alu -1 310 1 2119 90 13 13 chr12 7757146 7757445 -136525044 + AluSq SINE Alu 1 299 -14 495 267 47 20 chr12 7758866 7759016 -136523473 - MIR SINE MIR -44 218 65 2269 89 0 14 chr12 7759316 7759609 -136522880 + AluSc SINE Alu 1 289 -20 671 227 0 0 chr12 7759854 7759973 -136522516 + FLAM_A SINE Alu 3 121 -12 213 231 0 0 chr12 7760159 7760211 -136522278 + (TA)n Simple_repeat Simple_repeat 2 53 0 180 0 0 0 chr12 7760724 7760744 -136521745 + (CA)n Simple_repeat Simple_repeat 1 20 0 188 300 54 54 chr12 7760974 7761104 -136521385 + L2 LINE L2 3125 3254 -18 507 278 86 15 chr12 7761244 7761442 -136521047 - L1ME LINE L1 -492 5629 5418 221 138 0 0 chr12 7761488 7761517 -136520972 + (T)n Simple_repeat Simple_repeat 1 29 0 1200 180 38 70 chr12 7762570 7762625 -136519864 - MLT1A1 LTR MaLR 0 365 310 3645 146 4 2 chr12 7762625 7763151 -136519338 + MER1A DNA MER1_type 1 527 0 1200 180 38 70 chr12 7763151 7763411 -136519078 - MLT1A1 LTR MaLR -55 310 60 356 117 17 0 chr12 7763405 7763465 -136519024 + MADE1 DNA Mariner 20 80 0 * 460 110 0 85 chr12 7763465 7763542 -136518947 - MLT1A1 LTR MaLR -304 70 1 25 0 0 0 chr12 7764189 7764214 -136518275 + AT_rich Low_complexity Low_complexity 1 25 0 1395 151 41 50 chr12 7764384 7764527 -136517962 - MER66-int LTR ERV1 -2482 4194 4051 1882 116 0 28 chr12 7764527 7764812 -136517677 - AluSx SINE Alu 0 312 36 1395 151 41 50 chr12 7764812 7764986 -136517503 - MER66-int LTR ERV1 -2625 4051 3880 * 5329 165 29 11 chr12 7764969 7766430 -136516059 + MER66-int LTR ERV1 647 2169 -4507 2797 169 74 16 chr12 7766418 7766986 -136515503 + MER66-int LTR ERV1 2336 2936 -3740 * 5015 223 48 28 chr12 7767241 7767982 -136514507 + MER66-int LTR ERV1 2780 3561 -3115 3946 91 0 8 chr12 7767982 7768497 -136513992 - MER9 LTR ERVK 0 511 1 5015 223 48 28 chr12 7768497 7769094 -136513395 + MER66-int LTR ERV1 3561 4145 -2531 1050 168 19 0 chr12 7769128 7769289 -136513200 - FRAM SINE Alu -11 165 2 336 246 36 87 chr12 7769527 7769665 -136512824 + HAL1b LINE L1 652 782 -566 2938 139 60 24 chr12 7769958 7770492 -136511997 - L1MC/D LINE L1 -537 5807 5255 2282 146 0 36 chr12 7770497 7770909 -136511580 - L1MC2 LINE L1 -123 6221 5825 447 152 0 0 chr12 7770913 7770992 -136511497 + CT-rich Low_complexity Low_complexity 4 82 0 719 135 75 23 chr12 7770995 7771128 -136511361 + MER74A LTR ERVL 419 558 0 334 230 46 23 chr12 7771132 7771219 -136511270 - L2 LINE L2 -32 3281 3193 6043 137 54 7 chr12 7772172 7773276 -136509213 - L1MC1 LINE L1 0 6333 5181 181 245 82 51 chr12 7773618 7773716 -136508773 - MIR3 SINE MIR -9 199 99 1205 196 68 0 chr12 7773796 7774062 -136508427 - L1MDa LINE L1 -4368 2172 1889 381 220 11 11 chr12 7774065 7774156 -136508333 + MLT1D LTR MaLR 9 99 -406 544 197 0 8 chr12 7774166 7774288 -136508201 - L1M4 LINE L1 -825 5321 5201 255 170 0 0 chr12 7774288 7774335 -136508154 - MLT1D LTR MaLR -9 496 450 1101 213 32 29 chr12 7774413 7774690 -136507799 + MLT1D LTR MaLR 111 388 -117 2625 188 9 0 chr12 7774703 7775167 -136507322 - L1MDa LINE L1 -6052 488 21 477 0 0 0 chr12 7775178 7775231 -136507258 + (CA)n Simple_repeat Simple_repeat 2 54 0 1832 122 42 96 chr12 7775459 7775793 -136506696 + MLT1A1 LTR MaLR 1 313 -52 2263 108 10 0 chr12 7775793 7776098 -136506391 - AluSx SINE Alu 0 312 5 1832 122 42 96 chr12 7776098 7776149 -136506340 + MLT1A1 LTR MaLR 313 365 0 1057 153 99 132 chr12 7776602 7776953 -136505536 - MSTD LTR MaLR 0 396 1 2416 103 0 3 chr12 7777012 7777322 -136505167 + AluSp SINE Alu 1 309 -4 1941 136 7 33 chr12 7777401 7777702 -136504787 + AluSx SINE Alu 1 293 -19 3312 138 46 4 chr12 7778044 7778546 -136503943 + LTR17 LTR ERV1 256 778 -2 4995 94 9 29 chr12 7778548 7779249 -136503240 + HERV17 LTR ERV1 2 688 -7938 9578 61 4 5 chr12 7779706 7780870 -136501619 + HERV17 LTR ERV1 1535 2697 -5929 11747 63 11 22 chr12 7781006 7782506 -136499983 + HERV17 LTR ERV1 3096 4578 -4048 589 28 0 0 chr12 7782494 7782565 -136499924 + HERV17 LTR ERV1 7478 7548 -1078 * 2310 59 21 3 chr12 7782555 7782842 -136499647 + HERV17 LTR ERV1 8335 8626 0 2421 94 0 9 chr12 7782842 7783171 -136499318 + LTR17 LTR ERV1 1 326 -454 183 80 0 0 chr12 7783171 7783196 -136499293 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 274 196 0 0 chr12 7783395 7783446 -136499043 + MIR SINE MIR 3 53 -209 1394 175 36 62 chr12 7783464 7783519 -136498970 + MER58B DNA MER1_type 37 92 -2328 1911 144 18 0 chr12 7783519 7783804 -136498685 + AluSx SINE Alu 1 290 -22 1394 175 36 62 chr12 7783804 7784057 -136498432 + MER58B DNA MER1_type 92 337 -4 889 203 43 0 chr12 7784060 7784247 -136498242 + MIR SINE MIR 46 240 -22 29 0 0 0 chr12 7784301 7784330 -136498159 + AT_rich Low_complexity Low_complexity 1 29 0 266 314 116 0 chr12 7784622 7784743 -136497746 + MIR SINE MIR 128 262 0 214 220 51 0 chr12 7785925 7785984 -136496505 - MIR SINE MIR -62 146 85 204 274 12 24 chr12 7786462 7786546 -136495943 + G-rich Low_complexity Low_complexity 1 83 0 195 161 0 0 chr12 7787420 7787451 -136495038 - MIR SINE MIR -65 143 113 604 307 35 8 chr12 7788780 7789034 -136493455 - MIR SINE MIR -1 261 1 381 313 73 28 chr12 7789688 7789867 -136492622 - MIR SINE MIR -45 217 31 2068 128 20 0 chr12 7789868 7790166 -136492323 - AluSx SINE Alu -8 304 1 1204 220 32 16 chr12 7790902 7791211 -136491278 - L1MD2 LINE L1 -1 6358 6024 423 392 0 0 chr12 7791591 7791739 -136490750 - MIR SINE MIR -107 155 8 197 167 60 30 chr12 7792647 7792815 -136489674 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 344 162 45 45 chr12 7792830 7793066 -136489423 + (TA)n Simple_repeat Simple_repeat 1 236 0 300 149 21 129 chr12 7793071 7793265 -136489224 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 253 170 16 129 chr12 7793279 7793473 -136489016 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 * 259 222 62 25 chr12 7793425 7793587 -136488902 + (CATATA)n Simple_repeat Simple_repeat 3 170 0 * 391 150 39 61 chr12 7793499 7793679 -136488810 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 232 184 67 21 chr12 7793696 7793986 -136488503 + (TATAA)n Simple_repeat Simple_repeat 1 303 0 6965 50 13 52 chr12 7795077 7796770 -136485719 - SVA Other Other -683 1384 34 252 0 0 0 chr12 7796774 7796802 -136485687 + (GGGAGA)n Simple_repeat Simple_repeat 6 33 0 524 224 86 9 chr12 7796871 7796987 -136485502 + FLAM_A SINE Alu 4 128 -14 492 242 22 11 chr12 7797026 7797204 -136485285 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2098 122 3 7 chr12 7798745 7799039 -136483450 + AluSp SINE Alu 1 293 -20 378 61 0 0 chr12 7799052 7799101 -136483388 + (CACTG)n Simple_repeat Simple_repeat 4 52 0 388 293 26 17 chr12 7799101 7799217 -136483272 + MER5A DNA MER1_type 73 189 0 1186 214 69 33 chr12 7800704 7801007 -136481482 + L1 LINE L1 4788 5101 -1045 1604 164 96 3 chr12 7802030 7802342 -136480147 + MER58B DNA MER1_type 1 341 0 740 183 0 30 chr12 7805109 7805240 -136477249 + FLAM_A SINE Alu 1 127 -6 2332 107 3 0 chr12 7807826 7808135 -136474354 - AluSp SINE Alu -3 310 1 635 168 35 0 chr12 7808179 7808292 -136474197 - FLAM_C SINE Alu -25 118 2 224 24 0 95 chr12 7808335 7808377 -136474112 + (A)n Simple_repeat Simple_repeat 1 38 0 2334 82 74 10 chr12 7808674 7809077 -136473412 + L1PA3 LINE L1 5724 6152 -3 5165 133 37 2 chr12 7809435 7810254 -136472235 + L1PA16 LINE L1 5320 6166 0 37 39 0 0 chr12 7810275 7810326 -136472163 + AT_rich Low_complexity Low_complexity 1 51 0 2437 75 0 0 chr12 7810326 7810618 -136471871 - AluSq SINE Alu -21 292 1 551 240 141 32 chr12 7811617 7811959 -136470530 - MLT1F LTR MaLR 0 542 100 396 173 0 91 chr12 7812390 7812500 -136469989 - MLT1F LTR MaLR -409 140 41 3127 107 22 6 chr12 7813404 7813892 -136468597 - L1MA3 LINE L1 0 6305 5810 469 302 107 13 chr12 7814290 7814515 -136467974 + MIR SINE MIR 17 262 0 1706 289 59 12 chr12 7814553 7815116 -136467373 + ERVL LTR ERVL 3576 4164 -1600 * 2043 294 23 14 chr12 7815109 7815759 -136466730 + ERVL LTR ERVL 4338 4993 -771 2167 104 0 10 chr12 7816583 7816872 -136465617 - AluSq SINE Alu -27 286 1 1111 240 20 20 chr12 7817127 7817373 -136465116 + MER69 DNA AcHobo 1 246 -980 428 214 45 0 chr12 7817368 7817457 -136465032 + MER69 DNA AcHobo 2434 2526 0 * 1965 122 11 7 chr12 7817601 7817887 -136464602 - AluSx SINE Alu -25 287 1 726 267 35 70 chr12 7818412 7818727 -136463762 - MLT1I LTR MaLR 0 409 106 327 333 82 6 chr12 7819051 7819210 -136463279 - L2 LINE L2 0 3313 3143 201 278 66 93 chr12 7819391 7819542 -136462947 - MIR SINE MIR -114 148 2 241 26 53 0 chr12 7819913 7819951 -136462538 + (TTA)n Simple_repeat Simple_repeat 3 42 0 8096 25 8 3 chr12 7819951 7821674 -136460815 - L1PA5 LINE L1 -18 6136 4405 809 149 0 0 chr12 7822724 7822845 -136459644 + FLAM_C SINE Alu 1 121 -12 5976 66 1 0 chr12 7823779 7824595 -136457894 - L1P LINE L1 -881 5265 4449 727 376 112 24 chr12 7824599 7825047 -136457442 - L2 LINE L2 -1922 1392 985 1180 217 151 30 chr12 7825047 7825219 -136457270 - MLT1A2 LTR MaLR 0 374 224 1341 224 3 33 chr12 7825219 7825522 -136456967 - AluJo SINE Alu -17 295 2 1180 217 151 30 chr12 7825522 7825681 -136456808 - MLT1A2 LTR MaLR -150 224 3 727 376 112 24 chr12 7825681 7826297 -136456192 - L2 LINE L2 -2329 985 235 258 261 0 0 chr12 7827410 7827475 -136455014 - MLT1K LTR MaLR 0 588 524 773 162 8 0 chr12 7828114 7828231 -136454258 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr12 7828236 7828257 -136454232 + AT_rich Low_complexity Low_complexity 1 21 0 323 329 138 0 chr12 7828311 7828478 -136454011 - L2 LINE L2 -151 3121 2932 325 265 0 29 chr12 7829082 7829184 -136453305 - L1MC5 LINE L1 -50 7911 7813 1119 216 72 61 chr12 7829216 7829772 -136452717 - L1MC5 LINE L1 -214 7747 7186 363 294 169 22 chr12 7830722 7830953 -136451536 - L1M4 LINE L1 -2196 3950 3686 963 169 71 83 chr12 7831054 7831323 -136451166 + L1 LINE L1 3221 3487 -2659 2183 110 7 13 chr12 7831323 7831633 -136450856 + AluSx SINE Alu 4 311 -1 963 169 71 83 chr12 7831633 7831701 -136450788 + L1 LINE L1 3487 3554 -2592 * 2385 156 13 61 chr12 7831695 7832235 -136450254 + L1 LINE L1 3866 4379 -1767 2008 134 10 0 chr12 7832238 7832530 -136449959 + AluSx SINE Alu 1 295 -17 956 188 33 62 chr12 7832534 7832806 -136449683 + L1MA9 LINE L1 5946 6209 -125 2492 233 34 39 chr12 7832890 7833791 -136448698 + L1M4 LINE L1 3502 4398 -1748 290 293 105 44 chr12 7833810 7834039 -136448450 + MARNA DNA Mariner 254 496 -90 511 280 97 24 chr12 7834364 7834571 -136447918 - MIR SINE MIR -27 235 14 539 262 92 44 chr12 7834983 7835070 -136447419 - L1MC4 LINE L1 -40 8002 7921 2336 100 0 0 chr12 7835070 7835370 -136447119 - AluSx SINE Alu -12 300 1 539 262 92 44 chr12 7835370 7835671 -136446818 - L1MC4 LINE L1 -121 7921 7595 1725 171 3 26 chr12 7835853 7836162 -136446327 + AluJb SINE Alu 1 302 -10 262 217 68 62 chr12 7836311 7836472 -136446017 - L1ME4a LINE L1 -4 6117 5956 2085 104 3 17 chr12 7836564 7836863 -136445626 - AluSg SINE Alu -15 295 1 239 327 36 12 chr12 7836871 7837039 -136445450 - L1ME4a LINE L1 -296 5825 5654 22 0 0 0 chr12 7837071 7837093 -136445396 + AT_rich Low_complexity Low_complexity 1 22 0 283 291 9 45 chr12 7837621 7837731 -136444758 - MIR SINE MIR -33 229 124 404 223 81 5 chr12 7838381 7838525 -136443964 - L1ME3 LINE L1 -1 6163 6009 1160 205 63 22 chr12 7838965 7839242 -136443247 - L1ME3 LINE L1 -167 5995 5702 1568 230 43 77 chr12 7839242 7839876 -136442613 + LTR9 LTR ERV1 1 612 0 1160 205 63 22 chr12 7839876 7839915 -136442574 - L1ME3 LINE L1 -460 5702 5666 992 128 0 0 chr12 7941685 7941826 -136340663 + AluSg/x SINE Alu 154 294 -18 2180 82 44 3 chr12 7941829 7942145 -136340344 - MER4E LTR ERV1 -316 450 122 1995 121 6 13 chr12 7942187 7942323 -136340166 + AluSq SINE Alu 1 136 -177 2145 112 0 0 chr12 7942323 7942626 -136339863 + AluSp SINE Alu 1 303 -10 1995 121 6 13 chr12 7942626 7942803 -136339686 + AluSq SINE Alu 136 312 -1 2024 148 0 0 chr12 7942812 7943122 -136339367 + AluSx SINE Alu 1 310 -2 1980 125 4 0 chr12 7943122 7943437 -136339052 + AluSx SINE Alu 3 318 0 411 265 34 17 chr12 7943437 7943554 -136338935 - L1M4 LINE L1 -1289 4857 4739 2339 68 0 0 chr12 7943554 7943861 -136338628 - AluY SINE Alu -4 307 1 2016 99 14 10 chr12 7943867 7944161 -136338328 - AluSq SINE Alu -18 295 1 1279 150 40 0 chr12 7944164 7944391 -136338098 - L1MB2 LINE L1 -286 5885 5650 1657 175 16 10 chr12 7944391 7944700 -136337789 - AluJo SINE Alu -1 311 1 606 213 25 8 chr12 7944708 7944830 -136337659 + FRAM SINE Alu 24 147 -29 183 129 0 0 chr12 7945012 7945043 -136337446 + (TG)n Simple_repeat Simple_repeat 2 32 0 268 144 0 24 chr12 7945154 7945204 -136337285 - Alu SINE Alu -261 39 1 2123 71 60 0 chr12 7945517 7945800 -136336689 + AluSx SINE Alu 1 300 -12 820 188 12 0 chr12 7945800 7945960 -136336529 + AluSg/x SINE Alu 132 293 -17 186 71 0 0 chr12 7946076 7946104 -136336385 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2492 44 0 0 chr12 7946149 7946447 -136336042 + AluY SINE Alu 1 298 -13 199 244 0 139 chr12 7946514 7946542 -136335947 - L2 LINE L2 -582 2732 2702 1304 178 36 39 chr12 7946542 7946851 -136335638 - AluJo SINE Alu -4 308 1 199 244 0 139 chr12 7946851 7946908 -136335581 - L2 LINE L2 -612 2702 2659 2047 124 7 0 chr12 7947434 7947740 -136334749 - AluSx SINE Alu 0 312 5 1991 108 7 0 chr12 7947998 7948286 -136334203 + AluSx SINE Alu 1 290 -22 255 173 0 0 chr12 7948500 7948552 -136333937 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1515 150 14 38 chr12 7948558 7948845 -136333644 - AluJo SINE Alu -12 300 21 1046 106 0 0 chr12 7948865 7949007 -136333482 + AluSg/x SINE Alu 121 262 -50 1063 191 76 142 chr12 7949077 7949548 -136332941 - MER31B LTR ERV1 -20 446 7 1186 151 82 58 chr12 7949840 7949872 -136332617 - AluJb SINE Alu -1 311 281 477 0 0 0 chr12 7949872 7949925 -136332564 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1186 151 82 58 chr12 7949925 7950183 -136332306 - AluJb SINE Alu -31 281 14 508 173 71 39 chr12 7950218 7950345 -136332144 - FLAM_A SINE Alu -2 131 1 256 93 0 0 chr12 7950375 7950418 -136332071 - HY3 scRNA scRNA -2 99 57 2061 126 3 0 chr12 7950446 7950747 -136331742 + AluSg SINE Alu 2 303 -7 2100 101 0 20 chr12 7950749 7951079 -136331410 + AluSp SINE Alu 3 313 0 1118 206 79 115 chr12 7951172 7951437 -136331052 + MER39 LTR ERV1 1 274 -433 591 194 0 72 chr12 7951437 7951576 -136330913 - FLAM_A SINE Alu 0 133 5 1118 206 79 115 chr12 7951576 7951761 -136330728 + MER39 LTR ERV1 274 464 -243 2313 82 0 0 chr12 7951761 7952064 -136330425 - AluSc SINE Alu -2 307 5 1118 206 79 115 chr12 7952064 7952134 -136330355 + MER39 LTR ERV1 464 688 -19 762 68 0 0 chr12 7952561 7952664 -136329825 - AluSp/q SINE Alu -3 310 208 1288 141 0 134 chr12 7952665 7952767 -136329722 + AluJb SINE Alu 43 157 -155 207 0 0 0 chr12 7952767 7952790 -136329699 + (TA)n Simple_repeat Simple_repeat 2 24 0 1288 141 0 134 chr12 7952790 7952985 -136329504 + AluJb SINE Alu 157 300 -12 22 0 0 0 chr12 7953014 7953036 -136329453 + AT_rich Low_complexity Low_complexity 1 22 0 2119 128 0 0 chr12 7953144 7953442 -136329047 + AluSg SINE Alu 1 298 -12 279 311 113 0 chr12 7953445 7953551 -136328938 + L2 LINE L2 3191 3308 -5 360 160 0 55 chr12 7953678 7953756 -136328733 + AluS SINE Alu 1 57 -251 1605 159 45 3 chr12 7953784 7954073 -136328416 + AluJb SINE Alu 1 301 -11 2212 75 7 3 chr12 7954420 7954725 -136327764 + AluSg SINE Alu 1 306 -4 2369 49 0 33 chr12 7954824 7955129 -136327360 - AluY SINE Alu -14 297 3 1116 165 40 0 chr12 7955135 7955359 -136327130 - L1PA13 LINE L1 0 6163 5931 301 325 0 0 chr12 7955720 7955800 -136326689 + L1ME LINE L1 5740 5819 -302 1680 131 4 0 chr12 7955816 7956075 -136326414 + AluSx SINE Alu 1 260 -52 329 170 0 0 chr12 7956348 7956401 -136326088 + Alu SINE Alu 1 53 -249 2003 113 10 3 chr12 7956419 7956710 -136325779 - AluSc SINE Alu -16 293 1 412 261 153 25 chr12 7956769 7956926 -136325563 + MIR SINE MIR 79 255 -7 2514 37 3 0 chr12 7958168 7958465 -136324024 + AluY SINE Alu 3 300 -11 1028 181 43 0 chr12 7958509 7958719 -136323770 + Charlie4a DNA MER1_type 25 243 -265 822 163 0 0 chr12 7958723 7958864 -136323625 + FLAM_C SINE Alu 3 143 0 692 159 24 111 chr12 7958884 7959022 -136323467 + Charlie4a DNA MER1_type 228 336 -1625 2391 77 0 0 chr12 7959022 7959333 -136323156 + AluY SINE Alu 1 311 0 692 159 24 111 chr12 7959333 7959446 -136323043 + Charlie4a DNA MER1_type 336 457 -51 1972 100 20 20 chr12 7959447 7959747 -136322742 + AluSp SINE Alu 1 300 -13 572 204 14 78 chr12 7959979 7960121 -136322368 - FLAM_A SINE Alu -1 141 9 2032 100 7 3 chr12 7960363 7960654 -136321835 + AluSc SINE Alu 2 293 -16 329 170 0 0 chr12 7960672 7960725 -136321764 - Alu SINE Alu -249 53 1 2117 96 0 35 chr12 7960806 7960975 -136321514 - AluSx SINE Alu -10 302 147 2159 105 3 0 chr12 7960975 7961271 -136321218 - AluSp SINE Alu -15 298 2 2117 96 0 35 chr12 7961271 7961414 -136321075 - AluSx SINE Alu -165 147 1 275 313 62 20 chr12 7961426 7961621 -136320868 - L1ME LINE L1 -304 5817 5615 1570 181 0 0 chr12 7961726 7961992 -136320497 + AluJo SINE Alu 3 268 -44 25 65 0 0 chr12 7962011 7962057 -136320432 + AT_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr12 7962143 7962185 -136320304 + AT_rich Low_complexity Low_complexity 1 42 0 1780 116 4 11 chr12 7962232 7962499 -136319990 - AluSp SINE Alu -48 265 1 389 223 0 0 chr12 7962586 7962664 -136319825 - AluJ/FRAM SINE Alu -15 287 216 192 97 0 0 chr12 7962871 7962902 -136319587 + (T)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr12 7963474 7963498 -136318991 + AT_rich Low_complexity Low_complexity 1 24 0 1342 211 16 20 chr12 7963871 7964175 -136318314 - AluSp SINE Alu 0 303 1 1829 150 3 0 chr12 7964191 7964478 -136318011 - AluSq SINE Alu -25 288 1 523 89 13 13 chr12 7964946 7965025 -136317464 + AluY SINE Alu 5 83 -228 1818 96 0 116 chr12 7965165 7965509 -136316980 + AluSx SINE Alu 1 304 -8 417 151 82 0 chr12 7965772 7965845 -136316644 + AluJ/FLAM SINE Alu 2 80 -232 704 154 46 23 chr12 7966007 7966137 -136316352 + AluJo/FLAM SINE Alu 1 133 -169 1687 100 25 0 chr12 7966140 7966381 -136316108 + AluSx SINE Alu 1 247 -65 1776 135 10 0 chr12 7966525 7966813 -136315676 + AluSx SINE Alu 15 305 -7 1198 279 71 16 chr12 7966814 7967284 -136315205 + MLT1D LTR MaLR 8 503 -2 1172 157 4 0 chr12 7967673 7968496 -136313993 - ALR/Alpha Satellite centromeric 0 826 1 1094 162 7 0 chr12 7968509 7969143 -136313346 - ALR/Alpha Satellite centromeric 0 638 1 844 206 0 76 chr12 7969280 7969342 -136313147 + AluJb SINE Alu 89 154 -158 2014 96 39 0 chr12 7969342 7969623 -136312866 + AluSp SINE Alu 7 298 -15 844 206 0 76 chr12 7969623 7969798 -136312691 + AluJb SINE Alu 154 308 -4 2290 65 0 3 chr12 7970059 7970351 -136312138 + AluSc SINE Alu 1 291 -18 1734 50 27 0 chr12 7970430 7970651 -136311838 + L1PA5 LINE L1 5926 6152 -2 1638 168 10 14 chr12 7970667 7970958 -136311531 + AluJo SINE Alu 1 290 -22 367 281 114 52 chr12 7971122 7971332 -136311157 - MIR SINE MIR -37 225 3 888 241 26 44 chr12 7971491 7971719 -136310770 + MER58A DNA MER1_type 1 224 0 1865 152 3 7 chr12 7972219 7972521 -136309968 - AluSx SINE Alu -11 301 1 2140 69 22 4 chr12 7972530 7972843 -136309646 - AluY SINE Alu 0 318 1 26 30 0 0 chr12 7972916 7972949 -136309540 + AT_rich Low_complexity Low_complexity 1 33 0 229 275 38 23 chr12 7973019 7973150 -136309339 - L1MDa LINE L1 -4989 1541 1409 2105 76 0 73 chr12 7973151 7973468 -136309021 - AluSg SINE Alu -16 294 1 325 272 44 20 chr12 7973475 7973594 -136308895 - L1MDa LINE L1 -5135 1408 1285 2241 83 10 0 chr12 7973643 7973945 -136308544 - AluSg SINE Alu -5 305 1 2177 116 0 0 chr12 7973946 7974247 -136308242 - AluSx SINE Alu -9 303 3 1948 136 0 3 chr12 7974250 7974551 -136307938 - AluSx SINE Alu -12 300 1 23 0 0 0 chr12 7974596 7974619 -136307870 + AT_rich Low_complexity Low_complexity 1 23 0 2057 119 10 0 chr12 7974622 7974917 -136307572 + AluSx SINE Alu 1 298 -14 236 273 91 23 chr12 7974940 7975028 -136307461 - L1MDa LINE L1 -5490 1040 947 261 233 105 23 chr12 7975192 7975278 -136307211 + L2 LINE L2 3221 3313 0 952 155 0 0 chr12 7975432 7975587 -136306902 + AluSg/x SINE Alu 156 310 -2 1861 145 0 42 chr12 7975595 7975689 -136306800 + AluSx SINE Alu 1 97 -215 2396 67 0 0 chr12 7975689 7975988 -136306501 + AluY SINE Alu 1 299 -12 1861 145 0 42 chr12 7975988 7976204 -136306285 + AluSx SINE Alu 97 298 -14 522 317 123 18 chr12 7976260 7976487 -136306002 + MIR SINE MIR 12 262 0 21 0 0 0 chr12 7976840 7976861 -136305628 + AT_rich Low_complexity Low_complexity 1 21 0 772 281 7 10 chr12 7976863 7977165 -136305324 + AluY SINE Alu 1 301 0 1085 201 0 0 chr12 7977165 7977379 -136305110 + AluSg/x SINE Alu 83 296 -14 522 317 123 18 chr12 7977435 7977662 -136304827 + MIR SINE MIR 12 262 0 1821 97 48 28 chr12 7977674 7977964 -136304525 - AluY SINE Alu -15 296 1 2217 94 0 7 chr12 7977993 7978302 -136304187 + AluSc SINE Alu 1 307 -2 2061 130 0 0 chr12 7978315 7978616 -136303873 + AluSx SINE Alu 1 301 -11 820 194 0 0 chr12 7978684 7978818 -136303671 - AluSg/x SINE Alu -23 289 156 4228 90 26 5 chr12 7979135 7979703 -136302786 - LTR19B LTR ERV1 0 580 1 2122 114 3 3 chr12 7979987 7980286 -136302203 - AluSx SINE Alu -13 299 1 358 332 20 50 chr12 7980308 7980507 -136301982 - MIR SINE MIR -46 216 24 198 143 0 0 chr12 7981195 7981230 -136301259 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 200 264 0 19 chr12 7981231 7981284 -136301205 - L2 LINE L2 0 3313 3262 2355 58 0 19 chr12 7981332 7981642 -136300847 - AluY SINE Alu -7 304 1 1969 151 12 82 chr12 7981683 7981862 -136300627 + MLT1B LTR MaLR 1 191 -199 1587 160 26 49 chr12 7981862 7981999 -136300490 + AluJo SINE Alu 12 151 -161 2298 80 7 3 chr12 7981999 7982301 -136300188 + AluSq SINE Alu 1 303 -10 1587 160 26 49 chr12 7982301 7982469 -136300020 + AluJo SINE Alu 151 310 -2 1969 151 12 82 chr12 7982469 7982705 -136299784 + MLT1B LTR MaLR 191 387 -3 2099 85 0 50 chr12 7983008 7983325 -136299164 - AluSg1 SINE Alu -8 301 1 2098 113 3 7 chr12 7983673 7983975 -136298514 + AluSq SINE Alu 1 301 -12 301 224 112 65 chr12 7984077 7984184 -136298305 + MER5B DNA MER1_type 2 113 -65 2271 198 40 28 chr12 7984287 7984348 -136298141 - MLT1D LTR MaLR -3 502 443 1222 169 177 0 chr12 7984348 7984597 -136297892 - AluSx SINE Alu -9 293 1 2271 198 40 28 chr12 7984597 7985031 -136297458 - MLT1D LTR MaLR -62 443 1 1858 150 0 0 chr12 7985036 7985322 -136297167 - AluSx SINE Alu -13 299 14 1646 178 0 7 chr12 7985658 7985956 -136296533 + AluJo SINE Alu 1 296 -16 2164 93 3 16 chr12 7986997 7987307 -136295182 - AluSq SINE Alu -7 306 1 2289 94 0 0 chr12 7987367 7987665 -136294824 - AluSx SINE Alu -14 298 1 292 165 0 0 chr12 7987783 7987834 -136294655 - AluJo SINE Alu -7 295 251 1098 171 0 5 chr12 7987836 7988023 -136294466 - AluJo SINE Alu -126 186 1 942 163 12 12 chr12 7988025 7988197 -136294292 - FAM SINE Alu -3 172 1 23 0 0 0 chr12 7988198 7988221 -136294268 + AT_rich Low_complexity Low_complexity 1 23 0 1085 180 48 89 chr12 7988226 7988345 -136294144 + L1M4 LINE L1 4683 4805 -1341 2045 119 3 0 chr12 7988345 7988648 -136293841 + AluSx SINE Alu 1 304 -8 1085 180 48 89 chr12 7988648 7988749 -136293740 + L1M4 LINE L1 4805 4889 -1257 206 32 32 0 chr12 7988749 7988780 -136293709 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1085 180 48 89 chr12 7988780 7988874 -136293615 + L1M4 LINE L1 4889 4985 -1161 1993 99 0 34 chr12 7989101 7989421 -136293068 + AluSq SINE Alu 1 310 0 209 236 36 0 chr12 7989451 7989506 -136292983 + CT-rich Low_complexity Low_complexity 2 58 0 772 209 7 7 chr12 7989528 7989676 -136292813 - AluJo SINE Alu -163 149 2 525 253 104 12 chr12 7989680 7989929 -136292560 + L1MC4 LINE L1 7768 8039 -3 1104 172 18 9 chr12 7989986 7990207 -136292282 + AluJb SINE Alu 87 309 -3 947 146 0 62 chr12 7990306 7990484 -136292005 + AluSp SINE Alu 137 303 -10 573 221 159 12 chr12 7990501 7990679 -136291810 + MIR SINE MIR 49 251 -11 2090 111 0 0 chr12 7990786 7991075 -136291414 + AluSx SINE Alu 1 289 -23 2023 121 23 3 chr12 7991252 7991558 -136290931 + AluSq SINE Alu 2 313 0 365 118 0 2 chr12 7991655 7991721 -136290768 + Alu SINE Alu 244 299 -3 3656 182 92 26 chr12 7991793 7992501 -136289988 + MER21B LTR ERV1 1 762 -101 2102 121 7 0 chr12 7992501 7992807 -136289682 + AluSq SINE Alu 1 308 -5 3656 182 92 26 chr12 7992807 7992840 -136289649 + MER21B LTR ERV1 762 791 -72 651 192 233 0 chr12 7994050 7994222 -136288267 + L1MC1 LINE L1 6110 6321 -12 192 125 0 0 chr12 7994363 7994395 -136288094 + (A)n Simple_repeat Simple_repeat 1 32 0 1426 136 14 85 chr12 7994536 7994831 -136287658 - AluJb SINE Alu -24 288 15 1954 113 0 7 chr12 7994839 7995131 -136287358 - AluSq SINE Alu -23 290 1 2375 68 0 3 chr12 7995632 7995941 -136286548 + AluY SINE Alu 1 308 -3 1221 77 6 22 chr12 7995947 7996128 -136286361 + AluSq SINE Alu 120 297 -16 648 239 176 10 chr12 7996172 7996377 -136286112 - MER8 DNA MER2_type 0 239 1 1594 44 0 10 chr12 7996414 7996618 -136285871 - AluY SINE Alu -28 283 82 924 130 7 0 chr12 7996627 7996773 -136285716 - AluJb SINE Alu -24 288 142 539 178 110 0 chr12 7997774 7997892 -136284597 + FLAM_A SINE Alu 2 132 -1 2094 84 17 3 chr12 7997900 7998197 -136284292 + AluSg SINE Alu 1 301 -9 2394 64 0 0 chr12 7998431 7998742 -136283747 + AluY SINE Alu 1 311 0 261 0 0 0 chr12 7998896 7998925 -136283564 + (A)n Simple_repeat Simple_repeat 1 29 0 234 62 0 0 chr12 7999469 7999501 -136282988 + (T)n Simple_repeat Simple_repeat 1 32 0 609 118 0 64 chr12 8000163 8000273 -136282216 + FRAM SINE Alu 56 158 -18 392 217 123 9 chr12 8000290 8000396 -136282093 + MER5A DNA MER1_type 45 162 -27 188 167 0 0 chr12 8000423 8000453 -136282036 + MER5A DNA MER1_type 148 177 -12 1968 136 0 37 chr12 8000663 8000799 -136281690 + AluSx SINE Alu 1 141 -171 2111 109 0 0 chr12 8000799 8001093 -136281396 + AluY SINE Alu 1 294 -17 1968 136 0 37 chr12 8001093 8001279 -136281210 + AluSx SINE Alu 141 311 -1 337 296 58 108 chr12 8001291 8001432 -136281057 + HAL1 LINE L1 2188 2335 -172 2078 132 0 3 chr12 8001432 8001742 -136280747 + AluSq SINE Alu 1 309 -4 337 296 58 108 chr12 8001742 8001765 -136280724 + HAL1 LINE L1 2335 2358 -149 1884 133 36 7 chr12 8001765 8002067 -136280422 + AluSx SINE Alu 1 311 -1 337 296 58 108 chr12 8002067 8002141 -136280348 + HAL1 LINE L1 2358 2415 -92 1811 137 37 0 chr12 8002265 8002564 -136279925 + AluSg SINE Alu 1 310 0 1192 149 0 5 chr12 8002815 8003009 -136279480 + AluJo SINE Alu 1 193 -119 1567 90 24 0 chr12 8003016 8003228 -136279261 - AluSx SINE Alu -95 217 1 417 165 13 0 chr12 8003228 8003307 -136279182 - MER39 LTR ERV1 -45 662 583 1410 159 14 41 chr12 8003307 8003602 -136278887 + AluJo SINE Alu 1 287 -25 219 139 0 0 chr12 8003660 8003696 -136278793 + (TG)n Simple_repeat Simple_repeat 1 36 0 2446 62 3 0 chr12 8003772 8004079 -136278410 - AluSp SINE Alu -5 308 1 2306 73 3 3 chr12 8004100 8004413 -136278076 - AluSp SINE Alu 0 313 1 2174 94 3 0 chr12 8005172 8005471 -136277018 - AluSx SINE Alu -11 301 2 632 134 10 0 chr12 8005472 8005569 -136276920 + L1MC3 LINE L1 6718 6815 -970 464 125 0 0 chr12 8005581 8005645 -136276844 + AluJ/FLAM SINE Alu 3 66 -246 323 224 30 0 chr12 8005645 8005712 -136276777 - LTR9B LTR ERV1 0 644 576 1752 169 7 0 chr12 8005713 8006015 -136276474 + AluSg SINE Alu 1 304 -6 834 152 103 0 chr12 8006028 8006193 -136276296 + L1MC3 LINE L1 6887 7068 -717 885 198 0 0 chr12 8006202 8006384 -136276105 - AluJo SINE Alu -12 300 119 372 153 133 102 chr12 8006411 8006509 -136275980 + L1MC3 LINE L1 7070 7170 -615 1754 216 39 44 chr12 8006598 8007009 -136275480 + LTR2 LTR ERV1 41 449 0 2188 114 7 0 chr12 8007028 8007336 -136275153 + AluSg SINE Alu 1 310 0 1781 123 88 0 chr12 8007368 8007653 -136274836 + AluSx SINE Alu 1 310 -2 244 150 0 25 chr12 8007672 8007712 -136274777 - Alu SINE Alu -261 39 1 1849 111 13 30 chr12 8007764 8008062 -136274427 + AluSg SINE Alu 1 293 -17 37 52 0 0 chr12 8008062 8008120 -136274369 + AT_rich Low_complexity Low_complexity 1 58 0 1303 193 20 20 chr12 8008193 8008493 -136273996 + AluSp SINE Alu 1 300 -13 2137 95 20 0 chr12 8008552 8008846 -136273643 - AluSx SINE Alu -12 300 1 704 154 46 23 chr12 8008849 8008979 -136273510 - AluJo/FLAM SINE Alu -169 133 1 1881 91 0 114 chr12 8009241 8009582 -136272907 - AluSg SINE Alu -8 302 1 1565 155 25 41 chr12 8009707 8010024 -136272465 + AluJb SINE Alu 1 312 0 285 299 180 50 chr12 8010044 8010323 -136272166 - L2 LINE L2 -311 3002 2687 2025 90 16 39 chr12 8010323 8010634 -136271855 + AluSx SINE Alu 1 304 -8 258 347 0 0 chr12 8010648 8010720 -136271769 + L2 LINE L2 3242 3313 0 303 210 86 12 chr12 8010771 8010852 -136271637 + MER5A DNA MER1_type 35 121 -68 454 258 39 79 chr12 8011237 8011415 -136271074 + MIR SINE MIR 53 223 -39 420 253 0 0 chr12 8012049 8012132 -136270357 - L2 LINE L2 0 3272 3190 1588 113 36 0 chr12 8012165 8012387 -136270102 - MER30 DNA MER1_type 0 230 1 1770 165 0 13 chr12 8012429 8012745 -136269744 - AluJo SINE Alu 0 312 1 2305 88 3 0 chr12 8012951 8013257 -136269232 - AluSp SINE Alu -6 307 1 277 356 0 0 chr12 8013363 8013453 -136269036 + L2 LINE L2 3183 3272 0 675 154 14 77 chr12 8013516 8013659 -136268830 - FLAM_A SINE Alu -1 141 8 435 313 126 47 chr12 8013795 8013900 -136268589 + MIR SINE MIR 32 127 -135 2312 39 7 4 chr12 8013900 8014203 -136268286 + AluY SINE Alu 2 305 0 435 313 126 47 chr12 8014203 8014310 -136268179 + MIR SINE MIR 127 262 0 673 233 0 0 chr12 8014347 8014476 -136268013 + FLAM_A SINE Alu 3 131 -2 270 81 0 0 chr12 8014496 8014533 -136267956 + (A)n Simple_repeat Simple_repeat 1 37 0 203 294 39 78 chr12 8014589 8014668 -136267821 + MIR3 SINE MIR 8 85 -123 2142 88 3 0 chr12 8014668 8014982 -136267507 + AluSq SINE Alu 1 315 0 203 294 39 78 chr12 8014982 8015003 -136267486 + MIR3 SINE MIR 85 105 -103 2119 110 0 25 chr12 8015160 8015477 -136267012 + AluSx SINE Alu 1 309 -3 1837 116 4 0 chr12 8015554 8015812 -136266677 + AluSx SINE Alu 53 311 -1 345 307 80 22 chr12 8015823 8015960 -136266529 + MIR SINE MIR 2 146 -116 1175 108 18 0 chr12 8015961 8016127 -136266362 + L1PA12 LINE L1 5993 6161 -7 2436 44 0 16 chr12 8016127 8016442 -136266047 + AluY SINE Alu 1 310 -1 1924 136 0 13 chr12 8016453 8016761 -136265728 + AluSx SINE Alu 1 304 -8 555 273 73 14 chr12 8016825 8017045 -136265444 + L1ME LINE L1 5378 5610 -511 842 171 8 139 chr12 8017048 8017293 -136265196 + AluJo SINE Alu 2 214 -98 831 120 0 8 chr12 8017341 8017474 -136265015 + FLAM_C SINE Alu 2 133 0 2127 116 0 0 chr12 8017769 8018070 -136264419 + AluSx SINE Alu 1 301 -11 1831 120 39 3 chr12 8018288 8018405 -136264084 + AluSc SINE Alu 3 114 -195 272 27 27 0 chr12 8018405 8018442 -136264047 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1831 120 39 3 chr12 8018442 8018607 -136263882 + AluSc SINE Alu 114 295 -14 2509 53 0 0 chr12 8019367 8019670 -136262819 - AluY SINE Alu -6 305 3 1001 130 0 0 chr12 8019992 8020130 -136262359 + AluSq/x SINE Alu 1 138 -174 1978 117 4 0 chr12 8020146 8020427 -136262062 + AluSx SINE Alu 21 302 -10 2184 110 0 17 chr12 8020834 8020969 -136261520 + AluSg SINE Alu 1 137 -173 2089 129 3 7 chr12 8020969 8021263 -136261226 + AluSg SINE Alu 1 293 -17 2184 110 0 17 chr12 8021263 8021428 -136261061 + AluSg SINE Alu 137 296 -14 1833 111 0 64 chr12 8021429 8021574 -136260915 + AluY SINE Alu 1 154 -157 2585 61 0 3 chr12 8021574 8021885 -136260604 + AluY SINE Alu 1 310 -1 2325 99 0 10 chr12 8021886 8022198 -136260291 + AluY SINE Alu 3 311 0 1833 111 0 64 chr12 8022198 8022347 -136260142 + AluY SINE Alu 153 278 -33 494 92 0 0 chr12 8022379 8022444 -136260045 - AluJ/FLAM SINE Alu -247 65 1 2493 86 0 0 chr12 8022703 8023004 -136259485 + AluY SINE Alu 1 301 -10 315 267 38 86 chr12 8023054 8023228 -136259261 - MIR SINE MIR -14 194 32 288 0 0 0 chr12 8023463 8023495 -136258994 + (TG)n Simple_repeat Simple_repeat 1 32 0 2068 128 3 22 chr12 8023557 8023870 -136258619 + AluSq SINE Alu 1 307 -6 273 290 0 0 chr12 8023875 8023944 -136258545 - MIR SINE MIR -74 188 120 343 25 0 0 chr12 8023945 8023985 -136258504 - tRNA-Thr-ACA tRNA tRNA -36 40 1 228 239 69 28 chr12 8023991 8024084 -136258405 - MIR SINE MIR -80 128 32 2302 84 7 23 chr12 8024290 8024599 -136257890 + AluSx SINE Alu 1 304 -8 626 228 16 0 chr12 8024911 8025038 -136257451 - MER5A DNA MER1_type 0 189 61 1631 143 3 14 chr12 8025039 8025326 -136257163 - MER39 LTR ERV1 0 707 424 2250 56 66 3 chr12 8025327 8025613 -136256876 - AluSg SINE Alu -6 304 1 2144 106 3 0 chr12 8025726 8026037 -136256452 - AluSq SINE Alu 0 312 1 225 0 0 0 chr12 8026131 8026156 -136256333 + (A)n Simple_repeat Simple_repeat 1 25 0 180 111 0 0 chr12 8026154 8026181 -136256308 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 * 335 303 51 17 chr12 8026422 8026597 -136255892 + L1ME4a LINE L1 5940 6120 -1 1563 160 3 95 chr12 8026599 8026771 -136255718 - AluJo SINE Alu -4 308 122 216 0 0 0 chr12 8026771 8026795 -136255694 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1835 130 0 11 chr12 8026795 8027056 -136255433 - AluSp SINE Alu -21 292 35 1563 160 3 95 chr12 8027056 8027219 -136255270 - AluJo SINE Alu -188 124 3 697 49 0 0 chr12 8027251 8027333 -136255156 - AluS SINE Alu -230 83 2 2158 122 6 35 chr12 8027338 8027657 -136254832 - AluSx SINE Alu -2 310 1 1611 148 15 77 chr12 8027771 8027913 -136254576 + AluSx SINE Alu 1 150 -162 2394 93 0 3 chr12 8027913 8028223 -136254266 + AluSg SINE Alu 1 309 -1 1611 148 15 77 chr12 8028223 8028404 -136254085 + AluSx SINE Alu 150 304 -8 2035 132 0 0 chr12 8028405 8028685 -136253804 + AluSx SINE Alu 1 280 -32 282 29 0 0 chr12 8028686 8028721 -136253768 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 1883 178 0 0 chr12 8028763 8029066 -136253423 + AluJb SINE Alu 1 303 -9 1750 53 31 13 chr12 8029564 8029790 -136252699 - AluY SINE Alu -81 230 1 2049 171 9 11 chr12 8029813 8030167 -136252322 + MLT1A1 LTR MaLR 1 437 -20 2195 114 0 3 chr12 8030167 8030466 -136252023 + AluSx SINE Alu 1 298 -14 2049 171 9 11 chr12 8030466 8030487 -136252002 + MLT1A1 LTR MaLR 437 457 0 23 0 0 0 chr12 8030570 8030593 -136251896 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 8030625 8030653 -136251836 + AT_rich Low_complexity Low_complexity 1 28 0 368 117 67 0 chr12 8030833 8030893 -136251596 - AluSx SINE Alu -4 296 233 4344 139 122 34 chr12 8030893 8032144 -136250345 + pTR5 LTR ERV1 290 2295 -143 1635 155 4 0 chr12 8032144 8032383 -136250106 - AluSx SINE Alu -72 240 1 1331 211 106 7 chr12 8032483 8032662 -136249827 - AluJo SINE Alu 0 312 93 213 65 0 0 chr12 8032662 8032693 -136249796 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1331 211 106 7 chr12 8032693 8032797 -136249692 - AluJo SINE Alu -219 93 1 361 269 92 15 chr12 8033059 8033189 -136249300 + MLT1H LTR MaLR 409 548 -1 1725 191 0 17 chr12 8033237 8033536 -136248953 + AluJo SINE Alu 1 294 -18 2121 121 3 13 chr12 8033537 8033835 -136248654 + AluSp SINE Alu 1 295 -18 1272 209 51 32 chr12 8033904 8033939 -136248550 + LTR53 LTR ERVL 189 222 -297 2028 172 0 3 chr12 8033939 8034247 -136248242 - AluSx SINE Alu -5 307 1 1272 209 51 32 chr12 8034247 8034522 -136247967 + LTR53 LTR ERVL 222 505 -14 2419 79 0 3 chr12 8034981 8035273 -136247216 - AluSc SINE Alu -18 291 1 244 137 0 39 chr12 8035459 8035508 -136246981 + Alu SINE Alu 1 47 -86 485 116 0 0 chr12 8035508 8035577 -136246912 - THE1C LTR MaLR 0 375 307 449 63 0 0 chr12 8035578 8035641 -136246848 - AluSp/q SINE Alu -11 302 240 1811 119 0 0 chr12 8035643 8035886 -136246603 + AluSg/x SINE Alu 67 309 -3 2504 72 7 0 chr12 8036396 8036702 -136245787 + AluSp SINE Alu 1 308 -5 451 236 11 0 chr12 8036732 8036821 -136245668 + FRAM/FAM SINE Alu 1 84 -92 2641 55 3 0 chr12 8037276 8037586 -136244903 - AluY SINE Alu 0 311 1 1462 225 32 42 chr12 8037743 8037787 -136244702 - MLT1A2 LTR MaLR 0 374 331 2456 101 0 0 chr12 8037787 8038095 -136244394 + AluSx SINE Alu 1 308 -4 1462 225 32 42 chr12 8038095 8038428 -136244061 - MLT1A2 LTR MaLR -43 331 1 1954 125 34 3 chr12 8038612 8038907 -136243582 + AluJo SINE Alu 1 304 -8 2126 150 52 86 chr12 8039284 8039725 -136242764 + MSTB LTR MaLR 1 426 0 2119 46 102 25 chr12 8039858 8040143 -136242346 + AluY SINE Alu 1 307 -4 364 201 84 123 chr12 8040374 8040553 -136241936 - L2 LINE L2 -10 3303 3132 2177 100 4 7 chr12 8040662 8040990 -136241499 - AluSg SINE Alu 0 329 3 2282 114 7 0 chr12 8040992 8041289 -136241200 - AluSx SINE Alu -13 299 1 1986 141 0 36 chr12 8041303 8041489 -136241000 - AluSq SINE Alu 0 313 148 2094 103 39 3 chr12 8041489 8041771 -136240718 - AluSx SINE Alu -20 292 1 1986 141 0 36 chr12 8041771 8041914 -136240575 - AluSq SINE Alu -165 148 1 207 247 65 32 chr12 8042161 8042254 -136240235 + L2 LINE L2 2239 2334 -980 693 174 0 43 chr12 8042254 8042392 -136240097 + AluJo/FLAM SINE Alu 1 132 -170 1315 62 80 0 chr12 8042394 8042570 -136239919 + AluY SINE Alu 3 192 -119 2118 117 53 91 chr12 8042687 8042847 -136239642 - Tigger1 DNA MER2_type -1983 435 271 2433 87 0 6 chr12 8042847 8043158 -136239331 - AluSc SINE Alu 0 309 1 2118 117 53 91 chr12 8043158 8043449 -136239040 - Tigger1 DNA MER2_type -2147 271 1 541 252 38 0 chr12 8043449 8043580 -136238909 - L2 LINE L2 -251 3062 2927 433 224 116 48 chr12 8043608 8043755 -136238734 - MER58B DNA MER1_type -3 338 182 2214 85 4 0 chr12 8043776 8044080 -136238409 + AluY SINE Alu 1 305 0 754 227 26 5 chr12 8044082 8044276 -136238213 + L1M4 LINE L1 5100 5297 -849 2158 117 7 3 chr12 8044298 8044607 -136237882 + AluY SINE Alu 1 310 -1 1356 135 34 10 chr12 8044774 8044981 -136237508 - AluSg/x SINE Alu -10 302 91 3821 170 72 51 chr12 8044981 8045786 -136236703 - LTR12 LTR ERV1 0 826 5 1149 167 27 12 chr12 8045801 8046059 -136236430 - pTR5 LTR ERV1 -1093 1345 1084 307 146 0 0 chr12 8046059 8046107 -136236382 - Alu SINE Alu -243 56 9 2291 106 0 3 chr12 8046122 8046424 -136236065 - AluSg SINE Alu -3 307 7 2192 118 3 0 chr12 8046429 8046733 -136235756 - AluSx SINE Alu -7 305 1 313 300 190 0 chr12 8046828 8046928 -136235561 + MER91A DNA MER1_type 58 176 -20 287 286 57 0 chr12 8046939 8047009 -136235480 + MER91A DNA MER1_type 123 196 0 402 183 43 35 chr12 8047036 8047151 -136235338 + Charlie2 DNA MER1_type 2726 2841 -21 2374 94 3 0 chr12 8047323 8047620 -136234869 + AluSp SINE Alu 2 299 -14 199 374 65 0 chr12 8048438 8048561 -136233928 + L2 LINE L2 2949 3079 -193 783 289 60 13 chr12 8048691 8048989 -136233500 + L2 LINE L2 575 886 -2428 2188 125 0 13 chr12 8048994 8049307 -136233182 - AluSx SINE Alu -3 309 1 1865 193 52 18 chr12 8049307 8049615 -136232874 + L1M4 LINE L1 4845 5176 -970 2378 107 3 0 chr12 8049615 8049924 -136232565 + AluSp SINE Alu 1 310 -3 1865 193 52 18 chr12 8049924 8050072 -136232417 + L1M4 LINE L1 5176 5317 -829 511 309 65 13 chr12 8050076 8050261 -136232228 - L2 LINE L2 -1317 1997 1796 1591 151 4 39 chr12 8050261 8050540 -136231949 - AluSx SINE Alu -11 301 33 511 309 65 13 chr12 8050540 8050584 -136231905 - L2 LINE L2 -1518 1796 1756 799 163 16 0 chr12 8050589 8050718 -136231771 + FLAM_A SINE Alu 1 131 -2 2168 133 3 0 chr12 8050807 8051107 -136231382 - AluSq SINE Alu -12 301 1 2330 85 0 3 chr12 8051129 8051444 -136231045 - AluSc SINE Alu 0 314 1 400 93 0 0 chr12 8051520 8051574 -136230915 + Alu SINE Alu 243 296 -14 581 284 18 30 chr12 8051574 8051743 -136230746 - MER5A DNA MER1_type -16 173 7 467 251 27 53 chr12 8051831 8051938 -136230551 - Charlie2 DNA MER1_type -2602 260 159 1536 171 36 39 chr12 8051938 8052243 -136230246 - 7SLRNA srpRNA srpRNA -15 305 2 467 251 27 53 chr12 8052243 8052322 -136230167 - Charlie2 DNA MER1_type -2703 159 79 26 45 0 45 chr12 8052366 8052432 -136230057 + AT_rich Low_complexity Low_complexity 1 63 0 2302 108 3 0 chr12 8052479 8052786 -136229703 + AluSg SINE Alu 1 308 -2 870 138 0 15 chr12 8052974 8053104 -136229385 + FLAM_C SINE Alu 2 129 -4 2320 102 3 0 chr12 8053306 8053610 -136228879 + AluSg SINE Alu 1 305 -5 2025 99 3 87 chr12 8053615 8053937 -136228552 + AluSp SINE Alu 19 313 0 909 324 35 19 chr12 8053940 8054314 -136228175 - L2 LINE L2 -660 2654 2275 238 121 0 0 chr12 8054315 8054348 -136228141 + U2 snRNA snRNA 1 33 -155 556 273 120 34 chr12 8054394 8054661 -136227828 - L3 LINE CR1 -145 1432 1143 1185 130 12 0 chr12 8054792 8054961 -136227528 - AluSg/x SINE Alu -8 302 132 2257 105 31 0 chr12 8054961 8055255 -136227234 - AluSg SINE Alu -7 303 1 321 241 38 0 chr12 8055585 8055664 -136226825 - L3 LINE CR1 -1081 496 415 916 228 25 0 chr12 8055664 8055861 -136226628 + MER20 DNA MER1_type 1 202 -17 677 121 0 0 chr12 8057596 8057695 -136224794 + HY3 scRNA scRNA 2 100 -1 25 0 0 0 chr12 8057695 8057720 -136224769 + AT_rich Low_complexity Low_complexity 1 25 0 2397 86 0 3 chr12 8057720 8058024 -136224465 + AluSc SINE Alu 1 303 -6 2211 100 0 19 chr12 8058486 8058795 -136223694 - AluSg SINE Alu -7 303 1 1842 162 0 4 chr12 8058918 8059189 -136223300 - AluJb SINE Alu -38 274 5 2019 116 10 3 chr12 8059262 8059556 -136222933 + AluSx SINE Alu 4 299 -13 2513 70 0 3 chr12 8059558 8059857 -136222632 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr12 8060018 8060040 -136222449 + AT_rich Low_complexity Low_complexity 1 22 0 508 151 75 0 chr12 8061033 8061126 -136221363 - HY3 scRNA scRNA -1 100 1 2254 106 3 0 chr12 8061135 8061443 -136221046 - AluSp SINE Alu 0 309 1 395 192 0 0 chr12 8061445 8061518 -136220971 - MER5A DNA MER1_type -115 74 2 281 113 113 19 chr12 8061729 8061782 -136220707 + MER81 DNA DNA 36 93 -21 501 176 0 44 chr12 8062080 8062171 -136220318 - AluJ/FLAM SINE Alu -224 88 2 2294 101 0 3 chr12 8062200 8062496 -136219993 + AluSg SINE Alu 1 295 -15 257 143 0 0 chr12 8062497 8062539 -136219950 + Charlie5 DNA MER1_type 2544 2585 -27 180 0 0 0 chr12 8063318 8063338 -136219151 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1410 112 11 0 chr12 8063342 8063530 -136218959 - AluSg/x SINE Alu -37 275 86 1475 127 53 133 chr12 8063989 8064311 -136218178 - AluJo SINE Alu -14 298 3 614 179 17 8 chr12 8064370 8064487 -136218002 + FLAM_C SINE Alu 26 143 0 2263 77 0 48 chr12 8064923 8065235 -136217254 - AluSx SINE Alu -15 297 1 591 188 0 0 chr12 8066080 8066181 -136216308 + FLAM_A SINE Alu 1 101 -41 2315 102 3 0 chr12 8066587 8066892 -136215597 - AluSx SINE Alu -5 307 2 2344 111 0 0 chr12 8067580 8067878 -136214611 - AluSq SINE Alu -15 298 1 928 184 0 0 chr12 8068084 8068231 -136214258 - AluJb SINE Alu -30 282 136 2317 107 0 3 chr12 8068269 8068579 -136213910 + AluSg1 SINE Alu 1 309 0 203 213 43 0 chr12 8069000 8069047 -136213442 + MIR SINE MIR 183 231 -31 2258 106 20 0 chr12 8069139 8069440 -136213049 - AluSx SINE Alu -4 308 2 2209 100 28 0 chr12 8069488 8069779 -136212710 - AluSg1 SINE Alu -10 299 1 1120 120 0 6 chr12 8070153 8070311 -136212178 - AluSx SINE Alu -12 298 142 2291 98 3 13 chr12 8070332 8070638 -136211851 - AluSg SINE Alu -7 303 1 474 31 0 0 chr12 8070661 8070726 -136211763 - MER41A LTR ERV1 -88 466 402 937 111 37 0 chr12 8070726 8070861 -136211628 - AluSx SINE Alu -173 140 1 1287 97 11 27 chr12 8071272 8071457 -136211032 + AluSg/x SINE Alu 128 309 -1 551 263 99 7 chr12 8071460 8071612 -136210877 + AluJo/FRAM SINE Alu 137 302 0 957 102 0 38 chr12 8071613 8071716 -136210773 + (GAAA)n Simple_repeat Simple_repeat 1 278 0 957 102 0 38 chr12 8071716 8071902 -136210587 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 623 133 62 47 chr12 8072366 8072494 -136209995 + FLAM_A SINE Alu 1 130 -3 2082 118 3 10 chr12 8072925 8073238 -136209251 - AluY SINE Alu 0 311 1 2061 121 3 0 chr12 8073243 8073541 -136208948 - AluSx SINE Alu -13 299 1 1082 107 0 0 chr12 8073725 8073875 -136208614 + AluSq/x SINE Alu 1 150 -162 195 42 0 0 chr12 8073889 8073913 -136208576 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 2039 114 17 0 chr12 8073970 8074268 -136208221 - AluSx SINE Alu -9 303 1 1974 121 0 0 chr12 8074444 8074746 -136207743 - AluSx SINE Alu 0 302 1 2126 91 10 0 chr12 8074981 8075279 -136207210 - AluSp SINE Alu -12 301 1 2083 128 0 0 chr12 8075315 8075619 -136206870 - AluSx SINE Alu -8 304 1 25 0 0 0 chr12 8075665 8075690 -136206799 + AT_rich Low_complexity Low_complexity 1 25 0 650 185 0 52 chr12 8075876 8076011 -136206478 + FLAM_A SINE Alu 1 128 -5 2306 60 7 13 chr12 8076031 8076332 -136206157 - AluY SINE Alu -10 301 3 776 180 60 80 chr12 8076478 8076678 -136205811 - MER21A LTR ERV1 0 931 736 483 124 0 56 chr12 8076868 8076957 -136205532 + AluS SINE Alu 222 305 -4 2479 62 0 0 chr12 8077155 8077459 -136205030 + AluY SINE Alu 1 304 -7 1074 277 89 53 chr12 8077469 8078054 -136204435 - L2 LINE L2 -771 2543 1938 1647 158 0 7 chr12 8078055 8078376 -136204113 + AluSx SINE Alu 1 319 0 513 171 48 9 chr12 8078438 8078543 -136203946 - AluSx SINE Alu -4 308 200 966 129 0 7 chr12 8078547 8078694 -136203795 - AluSx SINE Alu -166 146 1 2119 129 0 0 chr12 8078695 8079006 -136203483 - AluSx SINE Alu 0 312 2 393 254 42 117 chr12 8079020 8079260 -136203229 - L2 LINE L2 -1395 1919 1698 523 159 11 11 chr12 8079284 8079372 -136203117 + AluS SINE Alu 2 89 -224 789 212 18 0 chr12 8079441 8079606 -136202883 - L1MB7 LINE L1 -146 6038 5871 700 146 0 32 chr12 8079615 8079738 -136202751 - AluJ SINE Alu -3 309 191 893 146 0 0 chr12 8079742 8079879 -136202610 - AluJ SINE Alu -175 137 1 535 159 37 0 chr12 8079881 8079988 -136202501 - L1MB7 LINE L1 -306 5878 5768 241 114 136 0 chr12 8079995 8080039 -136202450 - L1MB7 LINE L1 -553 5631 5582 * 975 222 36 14 chr12 8080018 8080293 -136202196 - L1M4 LINE L1 -2210 3936 3656 390 125 31 0 chr12 8080294 8080358 -136202131 + MLT2C1 LTR ERVL 1 66 -331 2162 80 0 46 chr12 8080373 8080698 -136201791 - AluY SINE Alu -1 310 1 431 89 0 0 chr12 8080704 8080760 -136201729 - AluSp SINE Alu -17 293 238 260 111 37 74 chr12 8080763 8080817 -136201672 - AluSp SINE Alu -133 170 119 * 368 211 138 0 chr12 8080799 8080908 -136201581 + MLT2C1 LTR ERVL 74 197 -200 1103 148 0 0 chr12 8081014 8081190 -136201299 - AluSg/x SINE Alu 0 310 135 2144 101 3 0 chr12 8081193 8081481 -136201008 - AluSx SINE Alu -15 297 9 1544 95 0 5 chr12 8081481 8081692 -136200797 - AluSc SINE Alu -99 210 1 328 294 14 28 chr12 8081906 8082049 -136200440 + GA-rich Low_complexity Low_complexity 4 144 0 2301 68 3 0 chr12 8082484 8082776 -136199713 - AluSp SINE Alu -18 295 3 2327 43 3 0 chr12 8083080 8083385 -136199104 - AluY SINE Alu 0 306 1 23 78 0 0 chr12 8083422 8083473 -136199016 + AT_rich Low_complexity Low_complexity 1 51 0 2148 113 0 0 chr12 8083485 8083785 -136198704 - AluSx SINE Alu -10 302 3 456 252 9 9 chr12 8083852 8083963 -136198526 - MER70B LTR ERVL -11 567 457 2158 80 10 3 chr12 8084154 8084443 -136198046 - AluY SINE Alu -20 291 1 1898 145 20 0 chr12 8084443 8084740 -136197749 - AluSx SINE Alu -5 307 5 786 187 0 8 chr12 8084988 8085122 -136197367 - FLAM_A SINE Alu 0 133 1 1921 100 6 85 chr12 8085286 8085616 -136196873 + AluSq SINE Alu 1 304 -9 703 172 15 22 chr12 8085638 8085772 -136196717 - FLAM_C SINE Alu -4 139 7 300 291 13 76 chr12 8085819 8085977 -136196512 + L1ME4a LINE L1 5974 6121 0 2118 131 0 0 chr12 8085986 8086299 -136196190 + AluSq SINE Alu 1 313 0 957 168 11 173 chr12 8086468 8086687 -136195802 - AluSc SINE Alu -9 300 160 2304 75 3 0 chr12 8086687 8086981 -136195508 - AluSp SINE Alu -16 297 3 957 168 11 173 chr12 8086981 8087119 -136195370 - AluSc SINE Alu -149 160 1 1125 333 42 15 chr12 8087186 8087744 -136194745 + L2 LINE L2 2739 3309 -4 2016 125 0 7 chr12 8087762 8088066 -136194423 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr12 8088068 8088089 -136194400 + AT_rich Low_complexity Low_complexity 1 21 0 1652 124 4 4 chr12 8088138 8088388 -136194101 - AluSp SINE Alu -15 298 49 1004 92 0 0 chr12 8088395 8088525 -136193964 - AluSq/x SINE Alu -183 130 1 2141 104 0 0 chr12 8089102 8089400 -136193089 - AluSp SINE Alu -15 298 1 611 129 95 17 chr12 8089401 8089517 -136192972 - L1MC2 LINE L1 -517 5827 5703 1888 115 7 0 chr12 8089519 8089807 -136192682 + AluSx SINE Alu 1 290 -22 967 206 122 5 chr12 8089810 8090024 -136192465 + MLT1A1 LTR MaLR 48 286 -79 1144 162 16 0 chr12 8090026 8090217 -136192272 + L1M2 LINE L1 5496 5689 -623 1590 117 0 21 chr12 8090232 8090331 -136192158 + AluSq SINE Alu 39 139 -174 2037 128 0 3 chr12 8090331 8090637 -136191852 + AluSx SINE Alu 1 305 -7 1590 117 0 21 chr12 8090637 8090776 -136191713 + AluSq SINE Alu 139 272 -41 1952 120 13 25 chr12 8090813 8091129 -136191360 + AluSp SINE Alu 1 312 -1 23 54 0 0 chr12 8091145 8091182 -136191307 + AT_rich Low_complexity Low_complexity 1 37 0 408 167 0 0 chr12 8091225 8091297 -136191192 - AluSx SINE Alu -2 310 239 503 108 0 0 chr12 8091425 8091490 -136190999 + pTR5 LTR ERV1 326 390 -2048 1515 155 4 0 chr12 8091490 8091729 -136190760 - AluSx SINE Alu -72 240 1 266 115 0 115 chr12 8091802 8091841 -136190648 - AluSp SINE Alu -131 172 139 2064 142 0 0 chr12 8091841 8092144 -136190345 - AluSx SINE Alu -9 303 1 266 115 0 115 chr12 8092144 8092156 -136190333 - AluSp SINE Alu -164 139 127 2068 116 0 0 chr12 8092180 8092472 -136190017 - AluSg SINE Alu -18 292 1 1636 190 45 25 chr12 8092483 8092836 -136189653 + MLT1B-int LTR MaLR 1371 1730 -5 2113 155 34 16 chr12 8092842 8093223 -136189266 + MLT1B LTR MaLR 1 388 -2 928 298 143 41 chr12 8093224 8093723 -136188766 - L2 LINE L2 -157 3156 2709 849 244 44 131 chr12 8093723 8093878 -136188611 + MSTD LTR MaLR 1 168 -228 1719 113 0 113 chr12 8093878 8094215 -136188274 + AluJo SINE Alu 1 299 -13 849 244 44 131 chr12 8094215 8094453 -136188036 + MSTD LTR MaLR 168 355 -41 2243 94 0 19 chr12 8094453 8094772 -136187717 - AluSq SINE Alu 0 313 1 849 244 44 131 chr12 8094772 8094811 -136187678 + MSTD LTR MaLR 355 396 0 928 298 143 41 chr12 8094811 8095051 -136187438 - L2 LINE L2 -604 2709 2328 3402 123 94 62 chr12 8095205 8095336 -136187153 - L1MC2 LINE L1 -9 6335 6210 197 62 0 31 chr12 8095336 8095368 -136187121 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1867 122 0 0 chr12 8095377 8095647 -136186842 - AluSx SINE Alu -42 270 1 3402 123 94 62 chr12 8095647 8095812 -136186677 - L1MC2 LINE L1 -141 6203 6045 2089 114 10 0 chr12 8095812 8096111 -136186378 + AluSq SINE Alu 1 302 -11 3402 123 94 62 chr12 8096111 8096497 -136185992 - L1MC2 LINE L1 -299 6045 5620 294 29 0 0 chr12 8096521 8096555 -136185934 - U2 snRNA snRNA -152 36 3 2360 80 3 0 chr12 8096802 8097114 -136185375 - AluSp SINE Alu 0 313 1 684 86 11 0 chr12 8097114 8097207 -136185282 - L1MA1 LINE L1 -45 6257 6164 1338 244 81 50 chr12 8098103 8098599 -136183890 - L1ME3 LINE L1 -31 6131 5621 2045 120 3 0 chr12 8098630 8098922 -136183567 - AluSx SINE Alu -19 293 1 264 338 47 37 chr12 8098967 8099199 -136183290 - MIR3 SINE MIR -25 237 6 325 157 100 14 chr12 8099228 8099298 -136183191 - MER81 DNA DNA -3 111 36 497 149 5 234 chr12 8099509 8099584 -136182905 + MER5A DNA MER1_type 2 92 -97 2426 66 0 0 chr12 8099584 8099885 -136182604 + AluY SINE Alu 1 301 -10 497 149 5 234 chr12 8099885 8099896 -136182593 + MER5A DNA MER1_type 92 104 -85 1586 164 4 4 chr12 8099896 8100177 -136182312 + AluJb SINE Alu 1 281 -31 186 43 0 0 chr12 8100182 8100205 -136182284 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 497 149 5 234 chr12 8100205 8100312 -136182177 + MER5A DNA MER1_type 108 156 -33 209 284 45 30 chr12 8100589 8100656 -136181833 - L3 LINE CR1 -431 1146 1079 2306 81 0 0 chr12 8100721 8101017 -136181472 - AluSx SINE Alu -16 296 1 1453 88 0 19 chr12 8101190 8101405 -136181084 + AluSg/x SINE Alu 97 307 -5 448 123 37 12 chr12 8101425 8101506 -136180983 + AluSg/x SINE Alu 215 297 -12 22 0 0 0 chr12 8101594 8101616 -136180873 + AT_rich Low_complexity Low_complexity 1 22 0 1284 132 0 0 chr12 8101640 8101822 -136180667 - AluSx SINE Alu -130 182 1 2161 93 3 13 chr12 8102103 8102416 -136180073 - AluSx SINE Alu 0 312 3 3731 188 46 73 chr12 8102563 8103520 -136178969 - MER21A LTR ERV1 0 931 1 2112 96 4 0 chr12 8103982 8104287 -136178202 - AluSp SINE Alu 0 306 1 1521 165 0 86 chr12 8104401 8104534 -136177955 + AluJo SINE Alu 1 144 -168 1922 148 0 3 chr12 8104534 8104844 -136177645 - AluSx SINE Alu -3 309 1 1521 165 0 86 chr12 8104844 8105049 -136177440 + AluJo SINE Alu 144 310 -2 456 93 0 0 chr12 8105408 8105483 -136177006 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1617 99 119 0 chr12 8105483 8105736 -136176753 - AluSc SINE Alu -26 283 1 1172 142 31 62 chr12 8105951 8106113 -136176376 + Tigger5 DNA MER2_type 2072 2225 -98 2327 86 3 0 chr12 8106113 8106416 -136176073 - AluSp SINE Alu -9 304 1 1172 142 31 62 chr12 8106416 8106513 -136175976 + Tigger5 DNA MER2_type 2225 2323 0 970 183 83 121 chr12 8106513 8106604 -136175885 + L1ME2 LINE L1 5236 5329 -833 1959 127 0 3 chr12 8106604 8106888 -136175601 + AluSq SINE Alu 1 283 -30 970 183 83 121 chr12 8106888 8107179 -136175310 + L1ME2 LINE L1 5329 5603 -559 831 168 0 8 chr12 8107182 8107313 -136175176 + FLAM_C SINE Alu 1 130 -13 1112 211 21 28 chr12 8107314 8107597 -136174892 + L1ME2 LINE L1 5581 5864 -298 431 19 0 0 chr12 8107605 8107657 -136174832 + AluSq/x SINE Alu 82 133 -179 753 198 46 72 chr12 8107699 8107857 -136174632 + L1ME2 LINE L1 5871 6023 -141 1997 139 0 10 chr12 8107857 8108167 -136174322 + AluSx SINE Alu 1 307 -5 753 198 46 72 chr12 8108167 8108245 -136174244 + L1ME2 LINE L1 6023 6101 -63 2201 196 70 15 chr12 8108483 8108953 -136173536 - MLT1D LTR MaLR -2 503 8 1880 135 10 0 chr12 8108953 8109256 -136173233 - AluSx SINE Alu -6 306 1 2304 87 0 0 chr12 8109677 8109975 -136172514 + AluSq SINE Alu 1 298 -15 2330 80 0 3 chr12 8110294 8110596 -136171893 + AluSq SINE Alu 1 301 -12 186 43 0 0 chr12 8110639 8110662 -136171827 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 486 0 0 0 chr12 8111082 8111136 -136171353 + (TG)n Simple_repeat Simple_repeat 2 55 0 2134 110 0 0 chr12 8111291 8111590 -136170899 + AluSx SINE Alu 1 299 -13 687 188 0 43 chr12 8111828 8111966 -136170523 - FLAM_C SINE Alu -1 132 1 1697 143 49 0 chr12 8111969 8112256 -136170233 - AluJo SINE Alu -11 301 1 273 325 121 24 chr12 8112439 8112645 -136169844 - L2 LINE L2 -496 2818 2593 2110 108 7 0 chr12 8112734 8113031 -136169458 + AluSp SINE Alu 1 299 -14 780 273 47 17 chr12 8113930 8114238 -136168251 + L2 LINE L2 2739 3070 -243 2161 107 0 16 chr12 8114281 8114589 -136167900 - AluSx SINE Alu -9 303 1 1589 168 23 23 chr12 8114592 8114783 -136167706 - AluJo SINE Alu -2 310 117 192 40 0 0 chr12 8114783 8114808 -136167681 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1589 168 23 23 chr12 8114808 8114926 -136167563 - AluJo SINE Alu -194 118 1 362 21 21 0 chr12 8115361 8115408 -136167081 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 2108 125 8 64 chr12 8115456 8115663 -136166826 - L1PA16 LINE L1 -3 6163 5987 2215 80 0 41 chr12 8115663 8115977 -136166512 - AluY SINE Alu -10 301 1 2108 125 8 64 chr12 8115977 8116161 -136166328 - L1PA16 LINE L1 -179 5987 5794 1932 109 20 7 chr12 8116170 8116464 -136166025 - AluSx SINE Alu -14 298 1 662 90 0 10 chr12 8116475 8116575 -136165914 + (TTCC)n Simple_repeat Simple_repeat 1 99 0 2087 107 3 0 chr12 8116575 8116865 -136165624 - AluSg SINE Alu -19 291 1 2347 77 0 0 chr12 8116891 8117201 -136165288 - AluY SINE Alu -1 310 1 996 113 0 134 chr12 8117202 8117440 -136165049 - L1MC/D LINE L1 -628 5614 5409 198 0 0 0 chr12 8117493 8117515 -136164974 + (TG)n Simple_repeat Simple_repeat 1 22 0 270 56 0 0 chr12 8117530 8117566 -136164923 + (TA)n Simple_repeat Simple_repeat 2 37 0 2502 65 3 0 chr12 8117566 8117876 -136164613 - AluSp SINE Alu -2 311 1 23 33 0 0 chr12 8117876 8117906 -136164583 + AT_rich Low_complexity Low_complexity 1 30 0 1937 109 60 0 chr12 8117917 8118201 -136164288 - AluSp SINE Alu -12 301 1 1900 135 0 0 chr12 8118525 8118854 -136163635 + AluSx SINE Alu 1 329 0 32 43 0 0 chr12 8118959 8119005 -136163484 + AT_rich Low_complexity Low_complexity 1 46 0 1522 180 0 11 chr12 8119006 8119290 -136163199 - AluJb SINE Alu -23 289 9 353 75 19 0 chr12 8119807 8119860 -136162629 + (CA)n Simple_repeat Simple_repeat 2 55 0 710 335 11 27 chr12 8120073 8120336 -136162153 - MIR SINE MIR -2 260 2 788 164 0 8 chr12 8120751 8120885 -136161604 + FLAM_C SINE Alu 1 133 0 1386 213 37 0 chr12 8120902 8121178 -136161311 - AluJo SINE Alu -30 282 5 2288 97 10 13 chr12 8121352 8121660 -136160829 - AluSx SINE Alu -5 307 1 2305 93 3 7 chr12 8121662 8121962 -136160527 - AluSq SINE Alu -14 299 1 1143 99 0 47 chr12 8122344 8122516 -136159973 + FRAM SINE Alu 1 163 -13 203 306 0 0 chr12 8122532 8122594 -136159895 + CT-rich Low_complexity Low_complexity 4 65 0 706 204 8 0 chr12 8123263 8123395 -136159094 + FLAM_A SINE Alu 1 133 0 2201 110 0 7 chr12 8123659 8123979 -136158510 + AluSg SINE Alu 1 310 0 21 0 0 0 chr12 8124199 8124220 -136158269 + AT_rich Low_complexity Low_complexity 1 21 0 1581 175 50 27 chr12 8124631 8124767 -136157722 + AluJo SINE Alu 1 132 -180 2473 25 0 7 chr12 8124767 8125091 -136157398 + AluY SINE Alu 1 322 0 1581 175 50 27 chr12 8125091 8125250 -136157239 + AluJo SINE Alu 132 304 -8 2474 51 10 0 chr12 8125259 8125555 -136156934 - AluY SINE Alu -12 299 1 695 215 126 0 chr12 8126017 8126152 -136156337 + FRAM SINE Alu 1 151 -25 871 150 23 0 chr12 8126155 8126288 -136156201 + AluJo SINE Alu 1 136 -176 197 62 0 31 chr12 8126293 8126325 -136156164 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 199 175 16 16 chr12 8126428 8126462 -136156027 + (TTA)n Simple_repeat Simple_repeat 1 37 -26 886 212 0 41 chr12 8126462 8126632 -136155857 - FAM SINE Alu -12 163 1 199 175 16 16 chr12 8126632 8126660 -136155829 + (TTA)n Simple_repeat Simple_repeat 36 63 0 1893 142 0 41 chr12 8126772 8127088 -136155401 + AluJb SINE Alu 1 303 -9 23 0 0 0 chr12 8127132 8127155 -136155334 + AT_rich Low_complexity Low_complexity 1 23 0 1740 198 3 15 chr12 8127430 8127754 -136154735 - MLT1F LTR MaLR -25 517 198 831 159 0 0 chr12 8127773 8127899 -136154590 - FLAM_C SINE Alu -17 126 1 721 267 5 26 chr12 8127899 8128090 -136154399 - MLT1F LTR MaLR -341 201 15 462 74 12 86 chr12 8128252 8128333 -136154156 + MER52C LTR ERV1 952 1026 -252 * 816 155 115 104 chr12 8128332 8128524 -136153965 - LTR56 LTR ERV1 -164 281 84 2543 58 0 3 chr12 8128524 8128833 -136153656 - AluY SINE Alu -3 308 1 816 155 115 104 chr12 8128833 8128918 -136153571 - LTR56 LTR ERV1 -361 84 1 2326 89 0 0 chr12 8129094 8129385 -136153104 + AluSq SINE Alu 1 291 -22 185 0 40 0 chr12 8129389 8129414 -136153075 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 341 214 0 125 chr12 8129422 8129534 -136152955 + MER61E LTR ERV1 4 101 -468 536 141 0 0 chr12 8130247 8130325 -136152164 + MSTB LTR MaLR 1 78 -348 2993 179 60 24 chr12 8130326 8130941 -136151548 - LTR9B LTR ERV1 -1 643 7 1280 213 2 11 chr12 8130941 8131214 -136151275 - HUERS-P3 LTR ERV1 0 8919 7158 792 178 26 36 chr12 8131518 8131727 -136150762 - HUERS-P3b LTR ERV1 -551 4329 1860 304 170 7 185 chr12 8131699 8131783 -136150706 - HUERS-P3b LTR ERV1 -462 6956 6903 * 2383 81 3 3 chr12 8131783 8132081 -136150408 - AluSp SINE Alu -15 298 1 304 170 7 185 chr12 8132081 8132131 -136150358 - HUERS-P3b LTR ERV1 -515 6903 6846 * 4209 190 37 5 chr12 8132121 8132869 -136149620 - HUERS-P3b LTR ERV1 -1986 6933 6162 * 4497 108 39 20 chr12 8132854 8133307 -136149182 - HUERS-P3b LTR ERV1 -3342 5577 5105 2334 77 10 0 chr12 8133307 8133607 -136148882 - AluY SINE Alu -8 303 1 4497 108 39 20 chr12 8133607 8133817 -136148672 - HUERS-P3b LTR ERV1 -3814 5105 4901 821 217 7 0 chr12 8133818 8133961 -136148528 - HUERS-P3b LTR ERV1 -4237 4682 4539 7647 150 33 14 chr12 8133964 8135034 -136147455 - HUERS-P3b LTR ERV1 -5314 2104 1834 2308 97 0 0 chr12 8135034 8135322 -136147167 - AluSc SINE Alu -21 288 1 7647 150 33 14 chr12 8135322 8135865 -136146624 - HUERS-P3b LTR ERV1 -5584 1834 1303 4217 145 155 27 chr12 8135873 8137233 -136145256 - pTR5 LTR ERV1 0 2438 741 2729 158 87 31 chr12 8137232 8137599 -136144890 - HUERS-P3b LTR ERV1 -7597 1322 912 * 2058 129 7 0 chr12 8137599 8137885 -136144604 - AluSg SINE Alu -22 288 1 2729 158 87 31 chr12 8137885 8138066 -136144423 - HUERS-P3b LTR ERV1 -8007 912 743 677 168 85 16 chr12 8138089 8138246 -136144243 - HUERS-P3b LTR ERV1 -6859 559 412 285 157 14 86 chr12 8138230 8138300 -136144189 - HUERS-P3b LTR ERV1 -8821 98 34 * 3010 168 76 25 chr12 8138324 8138931 -136143558 - LTR9B LTR ERV1 0 644 7 1570 159 159 3 chr12 8138940 8139242 -136143247 + MSTB LTR MaLR 78 426 0 271 62 0 42 chr12 8139499 8139547 -136142942 + (TAAAG)n Simple_repeat Simple_repeat 2 47 0 2121 130 0 0 chr12 8139610 8139903 -136142586 - AluSg SINE Alu -15 295 3 1751 327 74 26 chr12 8139903 8140298 -136142191 - L2 LINE L2 -293 3020 2645 6008 63 20 14 chr12 8140298 8140740 -136141749 + MER4E LTR ERV1 1 450 -316 2306 105 0 0 chr12 8140740 8141034 -136141455 - AluSx SINE Alu -18 294 1 6008 63 20 14 chr12 8141034 8141349 -136141140 + MER4E LTR ERV1 450 762 -4 1751 327 74 26 chr12 8141349 8141942 -136140547 - L2 LINE L2 -668 2645 1988 2373 76 0 28 chr12 8142236 8142553 -136139936 - AluY SINE Alu -2 309 2 2555 77 21 0 chr12 8142556 8142882 -136139607 - L1PA13 LINE L1 -4 6159 5827 631 211 0 8 chr12 8142882 8143003 -136139486 + L1MA4 LINE L1 6169 6300 0 265 359 98 38 chr12 8143257 8143544 -136138945 - L2 LINE L2 -4 3268 2965 7805 171 37 9 chr12 8143546 8145610 -136136879 + L1PB4 LINE L1 3710 5842 -314 2405 88 16 0 chr12 8145610 8145915 -136136574 + AluSx SINE Alu 1 310 -2 7805 171 37 9 chr12 8145915 8146131 -136136358 + L1PB4 LINE L1 5842 6051 -105 271 125 21 0 chr12 8146147 8146195 -136136294 + L1PA16 LINE L1 6101 6149 -17 250 352 117 20 chr12 8146195 8146391 -136136098 - L2 LINE L2 -186 3086 2872 1204 251 78 6 chr12 8146494 8146853 -136135636 + L1MC4a LINE L1 5538 5922 -1886 2456 81 3 0 chr12 8147350 8147657 -136134832 - AluSc SINE Alu -1 308 1 632 153 178 31 chr12 8147830 8147993 -136134496 + MER53 DNA DNA 1 187 -2 618 95 0 0 chr12 8148099 8148194 -136134295 + (CGG)n Simple_repeat Simple_repeat 3 97 0 391 289 0 0 chr12 8148487 8148577 -136133912 - MIR SINE MIR -126 136 47 1155 108 0 0 chr12 8148578 8148744 -136133745 + AluSg/x SINE Alu 137 302 -10 294 120 100 0 chr12 8148744 8148794 -136133695 + Alu SINE Alu 236 290 -12 321 304 104 52 chr12 8149421 8149671 -136132818 + L1MEd LINE L1 961 1223 -4896 1155 218 97 7 chr12 8149756 8150236 -136132253 + L1ME LINE L1 5040 5557 -609 2168 97 3 17 chr12 8151048 8151346 -136131143 + AluSx SINE Alu 13 306 -6 3107 90 42 2 chr12 8151400 8151948 -136130541 + PABL_A LTR ERV1 1 655 -5 1144 283 70 15 chr12 8152520 8152990 -136129499 - L1ME3A LINE L1 -1 6169 5674 700 140 0 0 chr12 8152993 8153093 -136129396 - LTR12 LTR ERV1 0 714 615 312 253 10 10 chr12 8153096 8153195 -136129294 - LTR30 LTR ERV1 -80 642 544 1238 109 153 52 chr12 8153200 8153448 -136129041 - LTR12 LTR ERV1 -441 273 1 933 239 60 28 chr12 8153455 8153834 -136128655 - L1ME3A LINE L1 -612 5552 5156 2026 126 49 0 chr12 8153834 8154119 -136128370 + AluSq SINE Alu 1 299 -14 933 239 60 28 chr12 8154119 8154265 -136128224 - L1ME3A LINE L1 -1008 5156 5016 3423 208 80 6 chr12 8154272 8155178 -136127311 - L1ME1 LINE L1 -3 6163 5195 249 159 0 0 chr12 8156162 8156206 -136126283 + L1PA10 LINE L1 6121 6164 -4 39 22 0 0 chr12 8156585 8156631 -136125858 + AT_rich Low_complexity Low_complexity 1 46 0 2363 95 0 3 chr12 8158039 8158344 -136124145 - AluSg SINE Alu -6 304 1 270 295 91 39 chr12 8158430 8158658 -136123831 - L1ME LINE L1 -403 5759 5519 324 228 38 156 chr12 8158871 8159160 -136123329 + MER112 DNA MER1_type 1 255 -5 38 61 0 0 chr12 8159181 8159247 -136123242 + AT_rich Low_complexity Low_complexity 1 66 0 1535 128 173 0 chr12 8160202 8160451 -136122038 + AluSg SINE Alu 3 294 -16 802 256 106 8 chr12 8160507 8160752 -136121737 - MER82 DNA MER2_type 0 653 385 453 58 4 29 chr12 8160752 8160835 -136121654 - MLT2A1 LTR ERVL 0 453 368 1271 92 52 0 chr12 8160951 8161125 -136121364 - MLT2A1 LTR ERVL -40 404 222 1130 201 14 5 chr12 8161126 8161335 -136121154 - MER82 DNA MER2_type -264 389 179 1658 185 71 3 chr12 8161355 8161707 -136120782 - L1MA9 LINE L1 -1 6311 5936 893 110 43 0 chr12 8161711 8161875 -136120614 + CT-rich Low_complexity Low_complexity 1 171 0 746 134 8 0 chr12 8161875 8162002 -136120487 + (TCCC)n Simple_repeat Simple_repeat 4 131 0 1394 109 0 5 chr12 8162004 8162196 -136120293 - AluSg/x SINE Alu -40 270 80 17628 214 26 17 chr12 8162264 8163252 -136119237 - L1P4 LINE L1 -466 6350 5373 186 71 0 0 chr12 8163252 8163280 -136119209 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 17628 214 26 17 chr12 8163280 8164243 -136118246 - L1P4 LINE L1 -1443 5373 4420 546 70 0 93 chr12 8164243 8164276 -136118213 + MADE1 DNA Mariner 1 35 -45 1954 149 14 0 chr12 8164276 8164289 -136118200 - AluSx SINE Alu -13 299 288 708 64 0 0 chr12 8164289 8164383 -136118106 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 1954 149 14 0 chr12 8164383 8164664 -136117825 - AluSx SINE Alu -24 288 1 546 70 0 93 chr12 8164664 8164716 -136117773 + MADE1 DNA Mariner 35 78 -2 17628 214 26 17 chr12 8164716 8165495 -136116994 - L1P4 LINE L1 -2396 4420 3650 2378 93 0 10 chr12 8165495 8165796 -136116693 - AluSc SINE Alu -11 298 1 17628 214 26 17 chr12 8165796 8168583 -136113906 - L1P4 LINE L1 -3166 3650 775 2384 158 80 22 chr12 8168579 8168717 -136113772 - L1P4 LINE L1 -380 5786 5658 * 1762 85 0 5 chr12 8168717 8168941 -136113548 - AluY SINE Alu -9 302 80 2384 158 80 22 chr12 8168941 8169264 -136113225 - L1P4 LINE L1 -508 5658 5298 835 138 0 0 chr12 8170050 8170173 -136112316 - AluSp/q SINE Alu -12 301 179 1530 132 0 9 chr12 8170173 8170392 -136112097 - AluSx SINE Alu -93 219 3 398 130 0 26 chr12 8170797 8170874 -136111615 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1377 331 8 15 chr12 8171016 8171608 -136110881 - MER21A-int LTR ERV1 -128 6521 5934 711 291 49 61 chr12 8172616 8173236 -136109253 - MER21A-int LTR ERV1 -729 7056 3365 349 314 8 8 chr12 8173639 8173763 -136108726 - MER21A-int LTR ERV1 -3744 3152 3029 2086 153 0 0 chr12 8173942 8174243 -136108246 - AluSx SINE Alu -11 301 1 206 265 0 0 chr12 8174247 8174296 -136108193 + T-rich Low_complexity Low_complexity 1 49 0 2396 342 29 31 chr12 8174305 8176373 -136106116 - MER21A-int LTR ERV1 -2029 5756 2864 362 341 0 0 chr12 8176386 8176521 -136105968 - MER21A-int LTR ERV1 -4160 3625 3491 32178 113 12 53 chr12 8176545 8182955 -136099534 - L1PA7 LINE L1 0 6154 12 1715 323 41 36 chr12 8183276 8185281 -136097208 - MER21A-int LTR ERV1 -4395 3390 954 207 0 0 0 chr12 8185651 8185674 -136096815 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 8285 20 1 320 chr12 8185679 8187710 -136094779 + SVA Other Other 2 1383 -3 280 310 82 6 chr12 8188007 8188178 -136094311 - MER21A-int LTR ERV1 -6279 370 187 12026 247 21 21 chr12 8188794 8192303 -136090186 - L1P LINE L1 -950 5196 1686 2224 122 10 124 chr12 8192316 8192823 -136089666 - LTR10A LTR ERV1 -160 449 1 359 299 0 0 chr12 8193005 8193102 -136089387 - L1PA12 LINE L1 -5399 1446 1350 550 354 23 34 chr12 8193350 8193835 -136088654 - L1M2 LINE L1 -6317 521 3 2798 199 41 26 chr12 8193837 8194910 -136087579 - MER21A-int LTR ERV1 -2565 4193 163 280 167 42 0 chr12 8194930 8194978 -136087511 - MER21A-int LTR ERV1 -4141 50 1 2225 198 22 86 chr12 8195012 8195893 -136086596 - MER21A LTR ERV1 -17 914 1 349 323 19 19 chr12 8195897 8196079 -136086410 - L1M3de LINE L1 -5038 1615 1434 2452 78 0 0 chr12 8196230 8196526 -136085963 - AluY SINE Alu -14 297 2 3543 84 63 6 chr12 8196555 8197045 -136085444 - MER11A LTR ERVK -748 518 1 2105 215 0 35 chr12 8197046 8197535 -136084954 + L1 LINE L1 2398 2869 -3277 2335 114 47 33 chr12 8197558 8197917 -136084572 + THE1B LTR MaLR 1 364 0 2286 152 3 8 chr12 8197917 8198280 -136084209 + L1PB3 LINE L1 5794 6154 0 418 276 10 0 chr12 8198330 8198428 -136084061 + ERVL LTR ERVL 2186 2284 -3480 298 161 0 0 chr12 8198575 8198631 -136083858 - L1MB8 LINE L1 0 6178 6123 * 850 177 25 0 chr12 8198630 8198788 -136083701 + L1 LINE L1 3652 3813 -2333 720 215 71 11 chr12 8199122 8199498 -136082991 - L1MB8 LINE L1 -42 6136 5677 * 1320 291 63 30 chr12 8199497 8200368 -136082121 - L1M4c LINE L1 -3451 2931 2021 880 224 14 14 chr12 8200381 8200595 -136081894 - L1MB8 LINE L1 -1366 4780 4567 * 2236 203 35 18 chr12 8200593 8201319 -136081170 - L1MCb LINE L1 -4851 1194 600 1416 239 82 72 chr12 8201306 8201900 -136080589 - L1MCb LINE L1 -5821 743 144 * 2146 113 0 26 chr12 8202125 8202436 -136080053 - AluSc SINE Alu -6 303 1 561 272 75 8 chr12 8202665 8202904 -136079585 - Tigger8 DNA MER2_type -200 466 212 369 0 0 0 chr12 8204122 8204163 -136078326 + (CA)n Simple_repeat Simple_repeat 2 42 0 3611 113 19 2 chr12 8204348 8204869 -136077620 - L1MA1 LINE L1 0 6302 5773 408 293 108 81 chr12 8205455 8206206 -136076283 - HAL1 LINE L1 -681 1826 1056 4754 196 33 37 chr12 8207314 8208801 -136073688 - L1MA9 LINE L1 -36 6276 4793 2293 98 3 13 chr12 8208801 8209116 -136073373 - AluSx SINE Alu 0 312 1 4754 196 33 37 chr12 8209116 8209311 -136073178 - L1MA9 LINE L1 -1519 4793 4599 2767 114 5 18 chr12 8210996 8211389 -136071100 - L1PA8A LINE L1 -13 6118 5731 11471 41 6 0 chr12 8211476 8213561 -136068928 - L1PA5 LINE L1 0 6154 4064 2174 107 0 0 chr12 8213716 8214020 -136068469 + AluSg SINE Alu 1 304 0 21 36 0 0 chr12 8214986 8215014 -136067475 + AT_rich Low_complexity Low_complexity 1 28 0 2231 107 3 0 chr12 8216454 8216752 -136065737 + AluSq SINE Alu 1 299 -14 879 140 48 131 chr12 8216961 8217060 -136065429 + MER2 DNA MER2_type 1 72 -273 2221 108 0 0 chr12 8217060 8217346 -136065143 + AluSc SINE Alu 3 288 -21 879 140 48 131 chr12 8217346 8217475 -136065014 + MER2 DNA MER2_type 72 210 -135 2377 57 3 13 chr12 8217581 8217881 -136064608 + AluY SINE Alu 1 297 -14 1000 166 25 0 chr12 8217883 8218040 -136064449 + AluJb SINE Alu 136 296 -16 433 255 59 0 chr12 8218101 8218203 -136064286 - FLAM_A SINE Alu -30 112 5 1956 131 7 0 chr12 8218239 8218530 -136063959 - AluSx SINE Alu -19 293 1 1996 146 0 0 chr12 8218653 8218947 -136063542 + AluSp SINE Alu 1 294 -19 900 146 0 0 chr12 8218947 8219077 -136063412 + AluJo/FRAM SINE Alu 134 263 -49 1613 156 0 77 chr12 8219115 8219441 -136063048 + AluJo SINE Alu 12 312 0 22 70 0 0 chr12 8219466 8219509 -136062980 + AT_rich Low_complexity Low_complexity 1 43 0 2451 73 0 13 chr12 8219513 8219828 -136062661 + AluY SINE Alu 1 311 0 225 0 0 0 chr12 8219880 8219905 -136062584 + (T)n Simple_repeat Simple_repeat 1 25 0 2386 76 0 13 chr12 8220010 8220314 -136062175 + AluY SINE Alu 1 300 -11 316 300 131 38 chr12 8220338 8220628 -136061861 + L1ME LINE L1 319 635 -5435 2200 67 3 63 chr12 8220999 8221314 -136061175 + AluSc SINE Alu 1 296 -13 206 323 73 10 chr12 8221748 8221844 -136060645 - L2 LINE L2 -516 2798 2697 186 0 0 39 chr12 8222220 8222246 -136060243 + (TTTTG)n Simple_repeat Simple_repeat 1 175 0 1798 140 4 4 chr12 8222246 8222525 -136059964 - AluSg SINE Alu -1 304 1 228 247 53 113 chr12 8222526 8222625 -136059864 - L1MC/D LINE L1 -1982 5826 5737 2113 112 10 0 chr12 8222625 8222929 -136059560 + AluSc SINE Alu 1 307 -2 228 247 53 113 chr12 8222929 8222979 -136059510 - L1MC/D LINE L1 -2071 5737 5686 193 244 186 35 chr12 8223129 8223215 -136059274 - MIR SINE MIR -111 151 53 1736 163 0 19 chr12 8223223 8223536 -136058953 - AluSx SINE Alu -5 307 1 1664 180 3 3 chr12 8223538 8223844 -136058645 - AluJb SINE Alu -6 306 1 2074 118 0 16 chr12 8224053 8224368 -136058121 - AluSg SINE Alu 0 310 1 1623 186 3 6 chr12 8224601 8224913 -136057576 - AluJo SINE Alu 0 312 2 372 220 96 0 chr12 8225086 8225192 -136057297 + L1MC4 LINE L1 6699 6795 -1166 1129 127 0 0 chr12 8225226 8225392 -136057097 + AluSq SINE Alu 130 295 -18 2106 82 4 4 chr12 8225392 8225706 -136056783 + AluSg SINE Alu 1 314 0 422 211 0 0 chr12 8225783 8225854 -136056635 + AluJ/FLAM SINE Alu 2 72 -230 1107 132 0 17 chr12 8225854 8226028 -136056461 - AluSq SINE Alu -142 171 1 1194 109 77 0 chr12 8226313 8226496 -136055993 + AluSg/x SINE Alu 103 299 -13 1997 111 11 0 chr12 8226496 8226803 -136055686 + AluSg SINE Alu 1 310 0 1256 171 0 38 chr12 8226969 8227208 -136055281 - AluJo SINE Alu -82 230 1 289 304 51 65 chr12 8227511 8227649 -136054840 + MIR SINE MIR 5 140 -122 1574 174 0 15 chr12 8227660 8227930 -136054559 + AluJo SINE Alu 1 266 -46 220 84 189 32 chr12 8227934 8228029 -136054460 + (TTTAA)n Simple_repeat Simple_repeat 1 110 0 1849 140 0 10 chr12 8228040 8228340 -136054149 + AluSq SINE Alu 1 297 -16 700 88 10 0 chr12 8228348 8228450 -136054039 + HY1 scRNA scRNA 3 105 -7 2037 117 10 0 chr12 8228574 8228864 -136053625 - AluSg SINE Alu -17 293 1 1870 133 30 0 chr12 8228932 8229234 -136053255 - AluSx SINE Alu -1 311 1 1683 152 28 0 chr12 8230430 8230719 -136051770 - AluSx SINE Alu -15 297 1 1418 217 14 0 chr12 8230862 8231157 -136051332 + AluJb SINE Alu 1 299 -13 1909 151 7 3 chr12 8231157 8231456 -136051033 + AluSq SINE Alu 1 300 -13 2000 111 7 3 chr12 8231460 8231749 -136050740 + AluSx SINE Alu 3 292 -20 2230 94 10 3 chr12 8231754 8232062 -136050427 + AluSg SINE Alu 1 310 0 1011 149 0 12 chr12 8232481 8232693 -136049796 - AluSq SINE Alu 0 329 120 2384 50 0 3 chr12 8233192 8233493 -136048996 + AluY SINE Alu 1 300 -11 1440 181 17 13 chr12 8234441 8234739 -136047750 + AluJb SINE Alu 1 299 -13 1560 110 0 13 chr12 8234769 8234996 -136047493 + AluSq SINE Alu 1 224 -89 445 114 0 0 chr12 8235051 8235121 -136047368 + Alu SINE Alu 239 308 -3 1989 109 10 14 chr12 8236135 8236429 -136046060 - AluSp SINE Alu -20 293 1 1976 111 17 3 chr12 8236619 8236916 -136045573 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr12 8237025 8237052 -136045437 + AT_rich Low_complexity Low_complexity 1 27 0 1612 153 0 8 chr12 8237448 8237716 -136044773 + AluSx SINE Alu 46 311 -1 1428 216 10 10 chr12 8237769 8238065 -136044424 + AluJb SINE Alu 2 297 -5 21 0 0 0 chr12 8239679 8239700 -136042789 + AT_rich Low_complexity Low_complexity 1 21 0 2036 113 0 0 chr12 8239706 8239998 -136042491 + AluSx SINE Alu 1 292 -20 2036 115 0 16 chr12 8241272 8241576 -136040913 + AluSx SINE Alu 1 299 -13 1622 90 0 0 chr12 8241923 8242135 -136040354 + MER41A LTR ERV1 1 212 -342 257 138 0 17 chr12 8242280 8242338 -136040151 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 244 241 12 72 chr12 8242347 8242376 -136040113 + L2 LINE L2 3188 3217 -96 2222 84 3 7 chr12 8242376 8242674 -136039815 - AluSq SINE Alu -11 302 6 244 241 12 72 chr12 8242674 8242727 -136039762 + L2 LINE L2 3217 3265 -48 553 218 81 0 chr12 8242742 8242866 -136039623 + MER5A DNA MER1_type 28 161 -28 2196 95 7 10 chr12 8243336 8243642 -136038847 + AluSp SINE Alu 1 305 -8 593 152 10 0 chr12 8244310 8244409 -136038080 + HY1 scRNA scRNA 12 111 -1 1652 93 0 40 chr12 8244557 8244804 -136037685 + AluSg SINE Alu 1 237 -73 1830 117 18 0 chr12 8244837 8245110 -136037379 + AluSg SINE Alu 1 278 -32 868 100 6 25 chr12 8245110 8245270 -136037219 + (GAAA)n Simple_repeat Simple_repeat 1 157 0 488 213 50 100 chr12 8245274 8245335 -136037154 + MER58 DNA MER1_type 19 82 -2338 2341 75 7 0 chr12 8245335 8245642 -136036847 - AluSx SINE Alu -3 309 1 488 213 50 100 chr12 8245642 8245740 -136036749 + MER58 DNA MER1_type 81 170 -2250 186 43 0 0 chr12 8245748 8245771 -136036718 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 2063 120 3 0 chr12 8245788 8246097 -136036392 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr12 8246217 8246239 -136036250 + GC_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr12 8246690 8246725 -136035764 + AT_rich Low_complexity Low_complexity 1 35 0 1911 97 14 4 chr12 8247143 8247444 -136035045 + AluSg SINE Alu 1 304 0 771 171 0 0 chr12 8247723 8247852 -136034637 + AluJo/FLAM SINE Alu 3 131 -171 290 161 18 0 chr12 8247854 8247910 -136034579 + Alu SINE Alu 245 301 -1 330 306 69 35 chr12 8247922 8248066 -136034423 - MIR SINE MIR -77 185 37 442 189 33 0 chr12 8248420 8248510 -136033979 + L1MC3 LINE L1 7476 7568 -217 2032 98 20 3 chr12 8248518 8248814 -136033675 + AluSx SINE Alu 1 301 -11 334 171 24 12 chr12 8248928 8249010 -136033479 + L1MC3 LINE L1 7608 7690 -95 1919 115 25 0 chr12 8249013 8249291 -136033198 + AluSc SINE Alu 1 285 -24 2069 114 0 7 chr12 8249317 8249614 -136032875 + AluSq SINE Alu 1 295 -18 368 134 31 26 chr12 8249621 8249844 -136032645 + AluJo SINE Alu 3 301 0 314 119 0 0 chr12 8249920 8249962 -136032527 + Alu SINE Alu 1 42 -260 870 184 0 0 chr12 8250013 8250160 -136032329 + FRAM SINE Alu 1 142 -34 996 115 6 0 chr12 8250160 8250317 -136032172 - AluSg/x SINE Alu 0 310 153 334 171 24 12 chr12 8250528 8250610 -136031879 + L1MC3 LINE L1 7608 7690 -95 2042 116 10 0 chr12 8250613 8250907 -136031582 + AluSg SINE Alu 1 297 -13 2103 95 3 10 chr12 8250909 8251203 -136031286 + AluSg SINE Alu 3 294 -16 194 299 30 15 chr12 8251268 8251335 -136031154 + L3 LINE CR1 1079 1146 -431 25 0 0 0 chr12 8251504 8251529 -136030960 + AT_rich Low_complexity Low_complexity 1 25 0 879 108 0 15 chr12 8252195 8252325 -136030164 - AluSg/x SINE Alu -102 208 81 2325 73 0 7 chr12 8252325 8252626 -136029863 - AluY SINE Alu -12 299 1 23 0 0 0 chr12 8252911 8252934 -136029555 + AT_rich Low_complexity Low_complexity 1 23 0 1941 108 3 3 chr12 8252934 8253220 -136029269 - AluSx SINE Alu -24 288 3 198 0 0 0 chr12 8253399 8253421 -136029068 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1573 164 4 7 chr12 8253423 8253704 -136028785 - AluSx SINE Alu -30 282 3 554 92 255 0 chr12 8253704 8253802 -136028687 - Tigger7 DNA MER2_type -610 123 1 1887 101 4 0 chr12 8253825 8254092 -136028397 - AluSp SINE Alu -24 289 22 197 62 0 31 chr12 8254577 8254609 -136027880 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1883 103 4 0 chr12 8254620 8254882 -136027607 - AluSx SINE Alu -44 268 6 553 218 81 0 chr12 8254950 8255074 -136027415 + MER5A DNA MER1_type 28 161 -28 2073 118 3 0 chr12 8255771 8256068 -136026421 + AluSx SINE Alu 1 298 -14 815 277 7 17 chr12 8256076 8256376 -136026113 + AluSg SINE Alu 3 299 -1 2209 112 0 0 chr12 8256953 8257256 -136025233 + AluSq SINE Alu 1 303 -10 23 0 0 0 chr12 8257517 8257540 -136024949 + GC_rich Low_complexity Low_complexity 1 23 0 1204 124 5 11 chr12 8258163 8258349 -136024140 - AluSx SINE Alu -127 185 1 304 309 81 37 chr12 8258354 8258490 -136023999 - HAL1 LINE L1 -178 2329 2188 195 139 0 0 chr12 8258494 8258530 -136023959 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr12 8258654 8258675 -136023814 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 8258811 8258832 -136023657 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 8259041 8259064 -136023425 + AT_rich Low_complexity Low_complexity 1 23 0 458 185 0 0 chr12 8309266 8309347 -135973142 + L1ME LINE L1 5628 5708 -462 2167 94 0 0 chr12 8309383 8309670 -135972819 + AluSg SINE Alu 1 287 -23 213 108 0 0 chr12 8309670 8309707 -135972782 + (TA)n Simple_repeat Simple_repeat 1 37 0 322 266 85 60 chr12 8309707 8310071 -135972418 + L1MC5 LINE L1 5667 7752 -159 325 224 67 29 chr12 8309793 8309966 -135972523 - L1MC4 LINE L1 -1339 6983 1941 311 227 39 86 chr12 8309997 8310125 -135972364 - L1MC4 LINE L1 -4363 2063 1942 * 347 245 40 44 chr12 8310102 8310249 -135972240 + L1MC4 LINE L1 1941 6976 -1346 1718 149 0 0 chr12 8310253 8310521 -135971968 + AluSx SINE Alu 37 304 -8 1226 184 13 92 chr12 8310525 8310682 -135971807 + MLT1A1 LTR MaLR 1 169 -196 2031 114 0 10 chr12 8310682 8310979 -135971510 + AluSx SINE Alu 1 294 -18 2125 114 3 10 chr12 8310988 8311296 -135971193 + AluSx SINE Alu 1 306 -6 1226 184 13 92 chr12 8311296 8311433 -135971056 + MLT1A1 LTR MaLR 177 281 -84 1686 133 19 4 chr12 8311438 8311708 -135970781 + L1M2 LINE L1 5493 5766 -546 408 176 15 0 chr12 8311782 8311850 -135970639 + AluJo SINE Alu 117 185 -117 492 185 131 8 chr12 8311858 8311988 -135970501 - L1MA9 LINE L1 -365 5947 5802 2157 100 20 0 chr12 8311988 8312289 -135970200 - AluSx SINE Alu -5 307 1 544 213 0 0 chr12 8312311 8312405 -135970084 - AluJb SINE Alu -23 289 196 1789 161 3 0 chr12 8312417 8312715 -135969774 - AluSq SINE Alu -13 300 2 1785 141 47 10 chr12 8312733 8313032 -135969457 - AluSg SINE Alu 0 310 1 1999 136 0 0 chr12 8313035 8313337 -135969152 - AluSq SINE Alu -6 307 6 1422 138 0 0 chr12 8313340 8313550 -135968939 - AluSq SINE Alu -103 210 1 2091 114 0 0 chr12 8313688 8313996 -135968493 + AluSg SINE Alu 1 308 -2 1525 86 53 16 chr12 8314000 8314245 -135968244 - LTR61 LTR ERV1 -341 254 1 377 159 0 0 chr12 8314245 8314308 -135968181 + FLAM SINE Alu 63 125 -8 299 170 0 0 chr12 8314338 8314391 -135968098 + Alu SINE Alu 245 297 -5 2030 125 0 7 chr12 8314391 8314695 -135967794 + AluSq SINE Alu 1 302 -11 1701 155 17 3 chr12 8314714 8315010 -135967479 + AluSx SINE Alu 1 300 -12 2151 91 10 0 chr12 8315012 8315309 -135967180 + AluSp SINE Alu 1 300 -13 210 154 0 0 chr12 8315319 8315358 -135967131 + A-rich Low_complexity Low_complexity 4 42 0 827 103 0 8 chr12 8315362 8315479 -135967010 + AluSg/x SINE Alu 177 292 -18 1026 114 0 0 chr12 8315538 8315678 -135966811 + AluSc SINE Alu 1 140 -169 225 94 0 0 chr12 8315682 8315714 -135966775 + (A)n Simple_repeat Simple_repeat 1 32 0 1030 90 0 0 chr12 8315716 8315849 -135966640 + AluSg SINE Alu 1 133 -177 1655 96 8 4 chr12 8315849 8316089 -135966400 + AluSq SINE Alu 1 241 -72 4689 141 31 33 chr12 8316089 8317463 -135965026 + pTR5 LTR ERV1 743 2438 0 320 161 0 16 chr12 8317466 8317528 -135964961 + AluSq SINE Alu 238 298 -4 1653 153 11 14 chr12 8317550 8317832 -135964657 + AluSx SINE Alu 9 289 -23 1866 147 0 13 chr12 8317920 8318227 -135964262 + AluSg SINE Alu 1 303 -7 2281 93 3 0 chr12 8318251 8318561 -135963928 - AluY SINE Alu 0 311 1 2008 104 40 0 chr12 8318581 8318878 -135963611 - AluY SINE Alu -2 309 1 2216 74 11 0 chr12 8318908 8319215 -135963274 - AluY SINE Alu 0 310 1 24 32 0 0 chr12 8319363 8319394 -135963095 + AT_rich Low_complexity Low_complexity 1 31 0 626 143 0 0 chr12 8319407 8319505 -135962984 - HY1 scRNA scRNA -1 111 14 1950 108 21 0 chr12 8320184 8320471 -135962018 + AluSq SINE Alu 1 293 -20 186 43 0 0 chr12 8320668 8320691 -135961798 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 291 211 28 0 chr12 8320695 8320766 -135961723 - MER5A DNA MER1_type -40 149 77 1214 121 0 0 chr12 8320968 8321142 -135961347 - AluSg/x SINE Alu 0 309 136 1476 167 21 11 chr12 8321147 8321337 -135961152 - AluJo SINE Alu 0 312 117 432 0 0 0 chr12 8321337 8321385 -135961104 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1476 167 21 11 chr12 8321385 8321475 -135961014 - AluJo SINE Alu -195 117 29 2444 62 0 0 chr12 8321903 8322207 -135960282 - AluSx SINE Alu -8 304 1 503 250 91 0 chr12 8322315 8322447 -135960042 - MER5A DNA MER1_type -28 161 18 251 253 12 96 chr12 8322452 8322535 -135959954 - L2 LINE L2 -48 3265 3190 646 33 11 11 chr12 8322535 8322625 -135959864 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 570 308 98 37 chr12 8322698 8323136 -135959353 + L2 LINE L2 2548 3009 -304 191 222 0 0 chr12 8323453 8323489 -135959000 - L2 LINE L2 -765 2549 2514 2366 82 0 3 chr12 8323513 8323818 -135958671 + AluSc SINE Alu 1 304 -5 3877 96 12 50 chr12 8324061 8324229 -135958260 - MER41A LTR ERV1 0 554 381 2101 97 10 7 chr12 8324229 8324528 -135957961 - AluSp SINE Alu -13 300 1 2213 82 0 0 chr12 8324538 8324818 -135957671 - AluSq SINE Alu -20 293 14 3877 96 12 50 chr12 8324818 8325214 -135957275 - MER41A LTR ERV1 -182 372 1 198 257 146 21 chr12 8325407 8325551 -135956938 + L2 LINE L2 3044 3205 -108 2090 96 6 19 chr12 8326295 8326609 -135955880 - AluSx SINE Alu -2 310 1 2213 97 0 0 chr12 8326663 8326963 -135955526 - AluY SINE Alu -11 300 1 2483 40 0 7 chr12 8328031 8328328 -135954161 + AluY SINE Alu 1 295 -16 2045 93 10 10 chr12 8329100 8329400 -135953089 + AluSx SINE Alu 1 300 -12 2087 122 0 6 chr12 8329413 8329724 -135952765 + AluSx SINE Alu 1 309 -3 1701 152 0 35 chr12 8329733 8329931 -135952558 + AluSx SINE Alu 1 185 -127 2269 84 3 0 chr12 8329931 8330228 -135952261 - AluSp SINE Alu -12 301 4 1701 152 0 35 chr12 8330228 8330344 -135952145 + AluSx SINE Alu 185 304 -8 1677 116 135 4 chr12 8330916 8331183 -135951306 - AluSx SINE Alu 0 302 1 2339 87 0 0 chr12 8332079 8332389 -135950100 + AluSx SINE Alu 1 310 -2 1287 186 25 68 chr12 8332545 8332722 -135949767 - AluJb SINE Alu -3 309 151 2267 42 0 62 chr12 8332722 8333031 -135949458 - AluY SINE Alu -14 297 8 1287 186 25 68 chr12 8333031 8333176 -135949313 - AluJb SINE Alu -161 151 1 22 0 0 0 chr12 8333219 8333241 -135949248 + AT_rich Low_complexity Low_complexity 1 22 0 1850 78 114 14 chr12 8334242 8334523 -135947966 + AluSc SINE Alu 1 309 0 1329 108 5 0 chr12 8334613 8334798 -135947691 + AluSq SINE Alu 1 186 -127 361 167 0 0 chr12 8334800 8334866 -135947623 + AluS SINE Alu 232 297 -5 589 165 25 25 chr12 8335212 8335333 -135947156 + FLAM_A SINE Alu 1 121 -21 480 122 0 4 chr12 8335352 8335557 -135946932 + AluSx SINE Alu 1 274 -35 * 563 130 0 0 chr12 8335552 8335629 -135946860 - AluS SINE Alu -234 78 2 1825 161 7 3 chr12 8336358 8336663 -135945826 + AluSx SINE Alu 1 306 -6 2145 123 0 0 chr12 8336665 8336975 -135945514 - AluSg SINE Alu 0 310 1 2258 95 3 0 chr12 8336978 8337284 -135945205 - AluSc SINE Alu -2 307 1 1838 114 32 4 chr12 8337537 8337818 -135944671 - AluSp SINE Alu -21 292 4 1809 128 24 14 chr12 8337820 8338109 -135944380 - AluSx SINE Alu -16 296 5 189 0 0 0 chr12 8338113 8338134 -135944355 + (T)n Simple_repeat Simple_repeat 1 21 0 632 109 11 0 chr12 8338438 8338530 -135943959 + AluSp/q SINE Alu 215 307 -6 * 824 204 0 0 chr12 8338524 8338666 -135943823 - AluJb SINE Alu -31 281 140 1943 101 73 0 chr12 8338673 8338961 -135943528 - AluSq SINE Alu -4 309 1 2204 76 0 20 chr12 8339118 8339420 -135943069 - AluSx SINE Alu -16 296 1 2105 112 3 0 chr12 8339467 8339763 -135942726 - AluSp SINE Alu -16 297 1 2104 92 0 7 chr12 8339769 8340062 -135942427 - AluSg SINE Alu -19 291 1 1950 122 10 10 chr12 8341598 8341893 -135940596 - AluSg SINE Alu -15 295 1 1360 185 68 43 chr12 8341953 8342234 -135940255 - AluJb SINE Alu -11 291 4 2030 125 0 3 chr12 8342434 8342739 -135939750 - AluSg SINE Alu -6 304 1 2117 94 0 0 chr12 8342876 8343163 -135939326 - AluSx SINE Alu -15 297 11 1815 141 7 10 chr12 8343223 8343513 -135938976 + AluSx SINE Alu 1 289 -23 1195 139 0 0 chr12 8343531 8343718 -135938771 + AluSq SINE Alu 123 309 -4 1783 130 4 0 chr12 8343905 8344166 -135938323 + AluSx SINE Alu 1 262 -50 21 0 0 0 chr12 8344173 8344194 -135938295 + AT_rich Low_complexity Low_complexity 1 21 0 1879 113 34 20 chr12 8344194 8344486 -135938003 + AluSx SINE Alu 2 297 -15 1571 109 0 28 chr12 8344486 8344734 -135937755 + AluSp SINE Alu 73 313 0 439 95 0 0 chr12 8344749 8344812 -135937677 - MER41B LTR ERV1 -92 543 481 2348 204 8 22 chr12 8344817 8344934 -135937555 + L1MB7 LINE L1 5555 5672 -512 3541 70 7 11 chr12 8344934 8345389 -135937100 + MLT2A2 LTR ERVL 1 453 0 2348 204 8 22 chr12 8345389 8345495 -135936994 + L1MB7 LINE L1 5672 5778 -406 1932 145 3 0 chr12 8345495 8345791 -135936698 + AluSx SINE Alu 1 297 -15 2348 204 8 22 chr12 8345791 8346057 -135936432 + L1MB7 LINE L1 5778 6038 -146 2004 135 0 22 chr12 8346060 8346378 -135936111 - AluSx SINE Alu -1 311 1 29 0 0 0 chr12 8346480 8346509 -135935980 + AT_rich Low_complexity Low_complexity 1 29 0 340 307 73 39 chr12 8346509 8346681 -135935808 - L1MEc LINE L1 -3947 2477 2257 2310 74 0 3 chr12 8346681 8346977 -135935512 + AluSp SINE Alu 1 295 -18 787 177 0 0 chr12 8346991 8347115 -135935374 + FLAM_A SINE Alu 11 134 -8 1437 122 0 0 chr12 8347210 8347415 -135935074 - AluSx SINE Alu -103 209 5 216 0 0 0 chr12 8347430 8347454 -135935035 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2036 113 3 0 chr12 8347456 8347738 -135934751 - AluSq SINE Alu -30 283 1 818 167 0 0 chr12 8347738 8347870 -135934619 - AluJo/FLAM SINE Alu -170 132 1 572 357 13 21 chr12 8347890 8348128 -135934361 - L1MEc LINE L1 -5463 909 674 2372 49 0 0 chr12 8348309 8348617 -135933872 - AluY SINE Alu 0 308 1 2120 86 7 0 chr12 8348718 8349008 -135933481 - AluSp SINE Alu -16 297 6 407 310 14 28 chr12 8349169 8349385 -135933104 - L1MC4a LINE L1 -1860 5948 5736 2369 67 0 13 chr12 8349388 8349700 -135932789 - AluY SINE Alu -3 308 1 1889 131 7 3 chr12 8349721 8350012 -135932477 - AluJb SINE Alu -20 292 1 540 197 30 23 chr12 8350025 8350157 -135932332 - L1MB8 LINE L1 -170 6008 5876 1112 131 6 0 chr12 8350157 8350333 -135932156 - AluSg/x SINE Alu -6 304 128 2217 64 0 42 chr12 8350355 8350668 -135931821 + AluSp SINE Alu 1 300 -13 198 103 0 0 chr12 8350977 8351006 -135931483 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 539 201 42 74 chr12 8351641 8351697 -135930792 + LTR41 LTR ERVL 1 57 -716 2440 45 0 19 chr12 8351697 8352006 -135930483 - AluY SINE Alu -8 303 1 539 201 42 74 chr12 8352006 8352138 -135930351 + LTR41 LTR ERVL 57 183 -590 226 329 14 0 chr12 8352361 8352434 -135930055 + LTR41 LTR ERVL 511 584 -189 1934 88 49 14 chr12 8352511 8352795 -135929694 - AluSq SINE Alu -19 294 1 1699 154 35 0 chr12 8352894 8353180 -135929309 + AluSq SINE Alu 1 296 -17 353 236 122 24 chr12 8353265 8353388 -135929101 - L2 LINE L2 -493 2821 2687 2164 112 0 3 chr12 8353388 8353692 -135928797 + AluSq SINE Alu 1 303 -10 2245 78 0 3 chr12 8353811 8354104 -135928385 - AluSp SINE Alu -21 292 1 2051 88 32 0 chr12 8354497 8354781 -135927708 - AluSg SINE Alu -17 293 1 540 98 49 0 chr12 8355901 8355983 -135926506 + L1PA8 LINE L1 6086 6171 -1 687 134 0 0 chr12 8356982 8357079 -135925410 + AluJ/FLAM SINE Alu 2 98 -214 1436 148 12 136 chr12 8357097 8357435 -135925054 - AluSq SINE Alu -7 296 1 391 161 123 0 chr12 8357435 8357516 -135924973 - Tigger7 DNA MER2_type -2366 121 31 1718 139 64 4 chr12 8357533 8357814 -135924675 - AluSx SINE Alu -14 298 1 913 206 9 138 chr12 8358235 8358447 -135924042 - AluSx SINE Alu -8 304 153 1582 138 4 4 chr12 8358447 8358694 -135923795 + AluSx SINE Alu 46 292 -20 913 206 9 138 chr12 8358694 8358830 -135923659 - AluSx SINE Alu -159 153 1 2110 110 3 0 chr12 8358839 8359138 -135923351 - AluSp SINE Alu -13 300 1 3748 188 38 77 chr12 8359701 8360665 -135921824 + MER21A LTR ERV1 1 927 -4 1812 128 4 0 chr12 8361187 8361461 -135921028 - AluSx SINE Alu -37 275 1 633 171 16 47 chr12 8361607 8361736 -135920753 - AluJb SINE Alu -187 125 1 29 0 0 0 chr12 8361921 8361950 -135920539 + AT_rich Low_complexity Low_complexity 1 29 0 1570 130 0 86 chr12 8362868 8363183 -135919306 + AluSx SINE Alu 2 289 -23 2220 88 0 3 chr12 8363188 8363482 -135919007 + AluSc SINE Alu 1 293 -16 636 151 48 48 chr12 8363902 8364028 -135918461 - FLAM_A SINE Alu -7 126 1 1040 137 11 33 chr12 8364524 8364707 -135917782 - FRAM SINE Alu -4 172 1 1969 107 21 3 chr12 8365060 8365351 -135917138 - AluSp SINE Alu -17 296 1 2299 82 0 0 chr12 8365863 8366166 -135916323 - AluY SINE Alu -8 303 1 208 213 43 0 chr12 8366222 8366269 -135916220 - MIR SINE MIR -31 231 183 686 174 123 58 chr12 8366718 8366873 -135915616 + FRAM SINE Alu 1 164 -12 2107 95 3 0 chr12 8366951 8367245 -135915244 - AluY SINE Alu -11 300 6 1871 125 3 20 chr12 8367248 8367543 -135914946 - AluSq SINE Alu -18 295 6 538 228 0 32 chr12 8368675 8368798 -135913691 - FLAM_A SINE Alu -14 119 1 727 197 7 7 chr12 8370061 8370198 -135912291 - FLAM_C SINE Alu -5 138 2 2041 102 7 0 chr12 8370243 8370536 -135911953 + AluSp SINE Alu 2 296 -17 221 0 0 33 chr12 8371324 8371354 -135911135 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 189 0 0 0 chr12 8371483 8371504 -135910985 + (T)n Simple_repeat Simple_repeat 1 21 0 2448 62 0 0 chr12 8371997 8372302 -135910187 - AluSg SINE Alu -5 305 1 246 333 0 11 chr12 8372402 8372492 -135909997 - L2 LINE L2 -4 3309 3221 2255 47 3 62 chr12 8372492 8372813 -135909676 + AluY SINE Alu 1 302 -9 915 154 99 0 chr12 8373551 8373772 -135908717 - Charlie5 DNA MER1_type 0 2624 2382 363 182 0 0 chr12 8373774 8373840 -135908649 - Charlie5 DNA MER1_type -2418 194 129 2164 63 42 0 chr12 8373934 8374219 -135908270 - AluY SINE Alu -13 298 2 470 91 0 152 chr12 8374219 8374271 -135908218 - AluSc SINE Alu -233 76 42 2006 98 39 0 chr12 8374271 8374556 -135907933 + AluSq SINE Alu 1 296 -17 470 91 0 152 chr12 8374556 8374592 -135907897 - AluSc SINE Alu -267 42 2 1610 137 58 41 chr12 8374664 8374956 -135907533 + AluJo SINE Alu 3 299 -13 2196 86 3 10 chr12 8375347 8375651 -135906838 + AluSq SINE Alu 1 302 -11 2400 72 0 3 chr12 8375651 8375958 -135906531 + AluY SINE Alu 1 306 -5 701 146 38 38 chr12 8376393 8376450 -135906039 - Charlie5 DNA MER1_type 0 2585 2529 1752 149 3 14 chr12 8376450 8376746 -135905743 + AluSx SINE Alu 3 295 -17 701 146 38 38 chr12 8376746 8376873 -135905616 - Charlie5 DNA MER1_type -55 2530 2401 2128 45 0 34 chr12 8377074 8377410 -135905079 + AluY SINE Alu 3 328 0 2052 102 41 0 chr12 8377513 8377807 -135904682 - AluSx SINE Alu -6 306 1 2276 76 0 7 chr12 8378015 8378317 -135904172 - AluY SINE Alu -5 306 7 2031 106 33 7 chr12 8378397 8378700 -135903789 - AluSq SINE Alu -2 311 1 512 156 115 41 chr12 8378704 8378826 -135903663 - FLAM_A SINE Alu 0 142 12 229 223 138 85 chr12 8378845 8378975 -135903514 + L2 LINE L2 3175 3311 -2 460 211 74 16 chr12 8378977 8379192 -135903297 - LTR23 LTR ERV1 0 445 235 570 151 0 0 chr12 8379194 8379280 -135903209 + AluS SINE Alu 2 87 -225 2190 99 3 0 chr12 8379280 8379573 -135902916 + AluSx SINE Alu 1 294 -18 707 180 32 132 chr12 8379573 8379656 -135902833 - LTR56 LTR ERV1 -201 244 154 510 178 168 0 chr12 8379656 8379763 -135902726 - FLAM_A SINE Alu -5 128 4 707 180 32 132 chr12 8379763 8379929 -135902560 - LTR56 LTR ERV1 -291 154 20 1924 96 4 0 chr12 8379959 8380229 -135902260 + AluSx SINE Alu 34 304 -8 683 200 7 22 chr12 8380384 8380519 -135901970 - AluJo SINE Alu -178 134 2 1627 155 7 4 chr12 8380968 8381239 -135901250 + AluJb SINE Alu 37 308 -4 2095 115 3 13 chr12 8381305 8381618 -135900871 + AluSq SINE Alu 1 310 -3 220 372 100 46 chr12 8381812 8382073 -135900416 + L2 LINE L2 2946 3220 -52 396 141 43 11 chr12 8382299 8382391 -135900098 + CT-rich Low_complexity Low_complexity 2 96 0 1669 168 27 0 chr12 8382391 8382689 -135899800 - AluJb SINE Alu -6 306 1 1684 148 44 0 chr12 8382717 8383015 -135899474 - AluSx SINE Alu -1 311 1 1807 96 69 0 chr12 8383064 8383325 -135899164 - AluSc SINE Alu -20 289 11 2294 76 0 13 chr12 8383342 8383643 -135898846 - AluY SINE Alu -14 297 1 1629 127 8 0 chr12 8384413 8384657 -135897832 - AluSg SINE Alu -5 305 60 225 313 0 0 chr12 8384661 8384725 -135897764 - L2 LINE L2 -9 3304 3241 498 91 15 0 chr12 8384725 8384812 -135897677 + AluY SINE Alu 217 304 0 740 154 0 0 chr12 8384837 8384947 -135897542 + AluJo SINE Alu 27 136 -176 229 368 47 0 chr12 8385015 8385121 -135897368 - MIR SINE MIR -56 206 96 2205 111 0 0 chr12 8385126 8385424 -135897065 + AluSx SINE Alu 1 298 -14 1213 161 13 113 chr12 8385424 8385735 -135896754 - AluJo SINE Alu -28 284 5 1695 193 14 43 chr12 8385764 8385837 -135896652 + MLT2D LTR ERVL 1 75 -339 2247 58 14 10 chr12 8385837 8386162 -135896327 + AluSp SINE Alu 2 313 0 1695 193 14 43 chr12 8386162 8386440 -135896049 + MLT2D LTR ERVL 75 342 -72 2081 96 3 7 chr12 8386440 8386775 -135895714 + AluSx SINE Alu 1 334 0 2187 188 137 19 chr12 8386857 8387001 -135895488 + MLT1B-int LTR MaLR 1 127 -1244 2060 106 3 0 chr12 8387001 8387305 -135895184 + AluSp SINE Alu 1 305 0 2187 188 137 19 chr12 8387305 8387379 -135895110 + MLT1B-int LTR MaLR 127 191 -1180 185 62 0 31 chr12 8387379 8387411 -135895078 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2187 188 137 19 chr12 8387411 8387780 -135894709 + MLT1B-int LTR MaLR 191 660 -711 2438 53 7 0 chr12 8387783 8388086 -135894403 + AluY SINE Alu 1 305 -6 2109 123 0 0 chr12 8388107 8388409 -135894080 + AluSx SINE Alu 1 302 -10 1654 169 34 62 chr12 8388414 8388695 -135893794 + MLT1B-int LTR MaLR 1387 1657 -78 2467 36 0 19 chr12 8388695 8389004 -135893485 + AluY SINE Alu 2 304 -7 1654 169 34 62 chr12 8389004 8389076 -135893413 + MLT1B-int LTR MaLR 1657 1730 -5 2058 160 34 16 chr12 8389082 8389463 -135893026 + MLT1B LTR MaLR 1 388 -2 583 304 80 51 chr12 8389464 8389963 -135892526 - L2 LINE L2 -157 3156 2656 630 179 4 94 chr12 8389963 8390046 -135892443 + MSTC LTR MaLR 1 90 -275 2307 64 7 0 chr12 8390046 8390344 -135892145 + AluSp SINE Alu 1 300 -13 2646 29 0 0 chr12 8390344 8390651 -135891838 + AluY SINE Alu 1 308 -3 630 179 4 94 chr12 8390651 8390733 -135891756 + MSTC LTR MaLR 88 158 -207 1493 171 0 56 chr12 8390733 8391054 -135891435 + AluJo SINE Alu 1 303 -9 1995 88 34 20 chr12 8391072 8391240 -135891249 - AluSq SINE Alu -14 299 124 2409 64 0 10 chr12 8391240 8391554 -135890935 - AluY SINE Alu 0 311 1 1995 88 34 20 chr12 8391554 8391680 -135890809 - AluSq SINE Alu -189 124 1 865 266 176 3 chr12 8391721 8392010 -135890479 - L2 LINE L2 -656 2658 2320 1809 139 3 10 chr12 8392085 8392380 -135890109 + AluSq SINE Alu 1 293 -20 3501 134 103 35 chr12 8392459 8392588 -135889901 - L1MC2 LINE L1 -9 6335 6216 1098 96 0 0 chr12 8392588 8392745 -135889744 + (TA)n Simple_repeat Simple_repeat 1 157 0 342 0 0 0 chr12 8392744 8392782 -135889707 + (GA)n Simple_repeat Simple_repeat 2 39 0 * 3501 134 103 35 chr12 8392745 8392787 -135889702 - L1MC2 LINE L1 -128 6216 6178 1943 111 0 0 chr12 8392787 8393057 -135889432 - AluSx SINE Alu -42 270 1 3501 134 103 35 chr12 8393057 8393602 -135888887 - L1MC2 LINE L1 -166 6178 5609 294 29 0 0 chr12 8393621 8393655 -135888834 - U2 snRNA snRNA -152 36 3 1606 119 105 35 chr12 8393933 8394218 -135888271 - AluSx SINE Alu -7 305 1 1221 185 49 15 chr12 8394415 8394680 -135887809 + AluJo SINE Alu 6 279 -33 2504 49 0 3 chr12 8395462 8395768 -135886721 + AluY SINE Alu 1 305 -6 1680 143 13 27 chr12 8396411 8396711 -135885778 - AluJb SINE Alu -2 310 15 202 361 17 25 chr12 8397019 8397138 -135885351 - L2 LINE L2 -18 3295 3178 2157 109 3 0 chr12 8397153 8397456 -135885033 - AluSx SINE Alu -3 309 6 219 287 200 0 chr12 8397615 8397730 -135884759 - MIR SINE MIR -64 198 61 2244 82 0 10 chr12 8397813 8398119 -135884370 + AluSg SINE Alu 1 303 -7 1451 199 33 33 chr12 8398518 8398854 -135883635 + MER58B DNA MER1_type 1 336 -5 2078 112 3 3 chr12 8399093 8399396 -135883093 + AluSx SINE Alu 1 303 -9 1988 113 10 10 chr12 8399791 8400100 -135882389 + AluSq SINE Alu 1 309 -4 1167 80 0 0 chr12 8400225 8400406 -135882083 + AluSg/x SINE Alu 132 312 0 28 0 0 0 chr12 8400731 8400759 -135881730 + AT_rich Low_complexity Low_complexity 1 28 0 770 126 17 0 chr12 8400760 8400879 -135881610 - AluJb SINE Alu -11 301 181 258 167 0 0 chr12 8400883 8400925 -135881564 - THE1C LTR MaLR -2 426 385 2280 62 0 3 chr12 8400926 8401245 -135881244 + AluSq SINE Alu 1 318 0 1885 136 14 14 chr12 8401257 8401552 -135880937 + AluSx SINE Alu 1 295 -17 1478 150 51 90 chr12 8401559 8401599 -135880890 - THE1C LTR MaLR -35 340 300 1981 101 17 0 chr12 8401599 8401886 -135880603 + AluSg SINE Alu 5 296 -14 1478 150 51 90 chr12 8401886 8402038 -135880451 - THE1C LTR MaLR -75 300 166 2583 42 0 0 chr12 8402038 8402347 -135880142 - AluY SINE Alu -2 309 1 1478 150 51 90 chr12 8402347 8402507 -135879982 - THE1C LTR MaLR -209 166 1 257 197 0 49 chr12 8402507 8402565 -135879924 - AluYa5 SINE Alu -120 181 127 718 205 0 0 chr12 8402572 8402694 -135879795 - FLAM_C SINE Alu -11 122 1 2146 93 3 7 chr12 8402735 8403026 -135879463 - AluSx SINE Alu -20 292 3 519 179 98 49 chr12 8403033 8403156 -135879333 - FLAM_C SINE Alu -3 130 2 553 180 0 0 chr12 8403217 8403306 -135879183 + AluJ/FLAM SINE Alu 2 90 -222 845 201 6 136 chr12 8403332 8403467 -135879022 + AluJo SINE Alu 1 152 -160 1877 111 0 21 chr12 8403467 8403605 -135878884 + AluSp SINE Alu 1 140 -173 2272 84 0 13 chr12 8403605 8403914 -135878575 + AluSg SINE Alu 2 306 -4 1877 111 0 21 chr12 8403914 8404064 -135878425 + AluSp SINE Alu 140 283 -30 194 0 0 37 chr12 8404067 8404094 -135878395 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 845 201 6 136 chr12 8404094 8404293 -135878196 + AluJo SINE Alu 154 295 -17 2168 115 0 3 chr12 8404335 8404647 -135877842 - AluSx SINE Alu -1 311 1 1987 103 23 26 chr12 8404848 8405158 -135877331 - AluSx SINE Alu 0 312 4 2210 91 0 7 chr12 8405302 8405611 -135876878 - AluSx SINE Alu -5 307 1 303 282 20 54 chr12 8406295 8406371 -135876118 - L1ME2 LINE L1 0 6164 6094 180 0 0 0 chr12 8406371 8406391 -135876098 + (TC)n Simple_repeat Simple_repeat 1 20 0 303 282 20 54 chr12 8406391 8406463 -135876026 - L1ME2 LINE L1 -70 6094 6021 935 92 15 0 chr12 8406737 8406868 -135875621 - L1MA1 LINE L1 -6 6296 6164 305 279 0 0 chr12 8407761 8407847 -135874642 - L1ME3 LINE L1 -31 6131 6046 1780 104 16 49 chr12 8407877 8408185 -135874304 - AluSx SINE Alu -13 299 2 1108 119 0 6 chr12 8408276 8408444 -135874045 - AluSg/x SINE Alu -11 301 135 1108 216 113 12 chr12 8408446 8408774 -135873715 - L1ME3 LINE L1 -181 5981 5621 2061 110 0 10 chr12 8408777 8409077 -135873412 - AluSx SINE Alu -15 297 1 298 333 52 46 chr12 8409142 8409295 -135873194 - MIR SINE MIR -25 237 84 2345 71 0 0 chr12 8409303 8409597 -135872892 - AluY SINE Alu -17 294 1 310 209 291 0 chr12 8409713 8409799 -135872690 - MER81 DNA DNA -3 111 1 2076 104 0 7 chr12 8409905 8410202 -135872287 - AluSg SINE Alu -14 296 2 433 164 0 0 chr12 8410298 8410371 -135872118 + MER5A DNA MER1_type 2 74 -115 2239 98 0 0 chr12 8410372 8410667 -135871822 + AluSg SINE Alu 3 297 -13 1849 131 7 7 chr12 8410697 8410988 -135871501 + AluSx SINE Alu 1 291 -21 222 118 0 0 chr12 8411054 8411088 -135871401 + (A)n Simple_repeat Simple_repeat 1 34 0 670 150 0 0 chr12 8411321 8411421 -135871068 + HY3 scRNA scRNA 1 100 -1 2350 81 3 0 chr12 8411465 8411773 -135870716 + AluSp SINE Alu 1 309 -4 2232 67 0 42 chr12 8412225 8412538 -135869951 + AluY SINE Alu 1 300 -11 2226 92 0 0 chr12 8412999 8413294 -135869195 - AluY SINE Alu -16 295 1 1386 174 79 4 chr12 8413587 8413840 -135868649 + AluJb SINE Alu 3 274 -38 2035 117 3 7 chr12 8413880 8414189 -135868300 - AluY SINE Alu -3 308 1 189 0 0 0 chr12 8414389 8414410 -135868079 + (A)n Simple_repeat Simple_repeat 1 21 0 2227 82 0 7 chr12 8414527 8414830 -135867659 + AluY SINE Alu 1 301 -10 2071 100 3 3 chr12 8414851 8415151 -135867338 + AluSq SINE Alu 5 304 -9 1195 89 0 0 chr12 8415180 8415348 -135867141 + AluY SINE Alu 134 301 -10 2079 100 3 3 chr12 8415369 8415670 -135866819 + AluSq SINE Alu 5 305 -8 24 32 0 0 chr12 8415890 8415921 -135866568 + AT_rich Low_complexity Low_complexity 1 31 0 2168 99 0 3 chr12 8415921 8416223 -135866266 - AluSg SINE Alu -9 301 1 876 102 23 0 chr12 8416224 8416352 -135866137 - AluSq/x SINE Alu -176 136 6 2103 117 0 3 chr12 8416789 8417088 -135865401 - AluSq SINE Alu -15 298 1 217 281 120 60 chr12 8418125 8418188 -135864301 + L3 LINE CR1 244 302 -1275 2033 94 49 0 chr12 8418188 8418476 -135864013 + AluSp SINE Alu 1 302 -11 217 281 120 60 chr12 8418476 8418579 -135863910 + L3 LINE CR1 302 420 -1157 986 228 25 0 chr12 8418590 8418787 -135863702 - MER20 DNA MER1_type -17 202 1 290 260 39 0 chr12 8418793 8418870 -135863619 + L3 LINE CR1 417 496 -1081 1874 130 0 38 chr12 8419012 8419328 -135863161 - AluSq SINE Alu -9 304 1 2095 117 7 0 chr12 8419465 8419765 -135862724 + AluSq SINE Alu 6 307 -6 1016 137 0 0 chr12 8419827 8419980 -135862509 + AluSx SINE Alu 2 154 -158 21 0 0 0 chr12 8419985 8420006 -135862483 + AT_rich Low_complexity Low_complexity 1 21 0 525 263 109 76 chr12 8420138 8420228 -135862261 + L3 LINE CR1 1144 1230 -347 2161 108 7 0 chr12 8420228 8420533 -135861956 + AluSp SINE Alu 3 309 -4 525 263 109 76 chr12 8420533 8420746 -135861743 + L3 LINE CR1 1230 1457 -120 265 91 0 0 chr12 8420770 8420803 -135861686 - U2 snRNA snRNA -155 33 1 605 314 41 29 chr12 8420803 8421048 -135861441 + L2 LINE L2 2274 2521 -793 2012 110 0 36 chr12 8421049 8421358 -135861131 + AluSx SINE Alu 1 298 -14 317 241 23 35 chr12 8421362 8421449 -135861040 + L1MC4a LINE L1 5764 5849 -1959 2183 104 3 0 chr12 8421456 8421763 -135860726 + AluSq SINE Alu 1 308 -5 1095 203 147 15 chr12 8421795 8422061 -135860428 + AluSx SINE Alu 1 301 -1 2391 72 0 0 chr12 8422061 8422368 -135860121 + AluY SINE Alu 1 307 -4 725 38 0 38 chr12 8422270 8422376 -135860113 + AluY SINE Alu 210 311 0 255 246 120 113 chr12 8422466 8422698 -135859791 - L1MC4a LINE L1 -427 5745 5516 24 0 0 0 chr12 8422698 8422722 -135859767 + AT_rich Low_complexity Low_complexity 1 24 0 1605 192 4 0 chr12 8422722 8423003 -135859486 - AluSx SINE Alu -30 282 1 255 246 120 113 chr12 8423003 8423252 -135859237 - L1MC4a LINE L1 -655 5517 5428 2246 62 24 0 chr12 8423394 8423683 -135858806 - AluY SINE Alu -15 296 1 1617 185 7 7 chr12 8423685 8423982 -135858507 - AluJb SINE Alu -15 297 1 1804 161 3 0 chr12 8423986 8424278 -135858211 - AluSx SINE Alu -14 298 6 1964 116 20 3 chr12 8424326 8424627 -135857862 + AluSp SINE Alu 3 308 -5 279 252 32 41 chr12 8424636 8424759 -135857730 + L1ME4a LINE L1 5936 6057 -64 23 0 0 0 chr12 8424759 8424782 -135857707 + AT_rich Low_complexity Low_complexity 1 23 0 233 337 14 100 chr12 8424828 8425107 -135857382 + L2 LINE L2 2700 2954 -360 196 328 150 52 chr12 8425429 8425602 -135856887 - L2 LINE L2 -345 2969 2814 2159 83 31 0 chr12 8425602 8425891 -135856598 - AluSx SINE Alu -14 298 1 196 328 150 52 chr12 8425891 8426004 -135856485 - L2 LINE L2 -500 2814 2655 196 304 54 0 chr12 8426274 8426330 -135856159 - L2 LINE L2 -5 3267 3209 2190 99 0 16 chr12 8427272 8427586 -135854903 + AluSc SINE Alu 1 309 0 619 163 0 23 chr12 8427749 8427878 -135854611 + MER53 DNA DNA 1 126 -63 2172 73 17 7 chr12 8427979 8428280 -135854209 + AluY SINE Alu 1 304 -7 581 293 16 42 chr12 8428440 8428631 -135853858 - MER5A DNA MER1_type -3 186 1 1944 91 58 0 chr12 8428650 8428924 -135853565 + AluSq SINE Alu 6 295 -18 380 257 135 0 chr12 8428951 8429099 -135853390 + Charlie2a DNA MER1_type 1471 1638 -1224 272 313 202 0 chr12 8429200 8429299 -135853190 + MER91A DNA MER1_type 58 176 -20 317 257 57 0 chr12 8429310 8429380 -135853109 + MER91A DNA MER1_type 123 196 0 695 100 0 64 chr12 8429480 8429590 -135852899 + AluSg/x SINE Alu 191 293 -17 23 0 0 0 chr12 8429611 8429634 -135852855 + AT_rich Low_complexity Low_complexity 1 23 0 1169 309 83 23 chr12 8430855 8431116 -135851373 + L2 LINE L2 575 819 -2495 2271 93 0 0 chr12 8431116 8431416 -135851073 + AluSg1 SINE Alu 1 300 -9 1169 309 83 23 chr12 8431416 8431671 -135850818 + L2 LINE L2 819 1122 -2192 718 147 0 2 chr12 8431673 8431910 -135850579 + AluSx SINE Alu 2 282 -28 15723 69 3 24 chr12 8431910 8432394 -135850095 + HERVL-A1 LTR ERVL 926 1419 -4235 2028 91 6 70 chr12 8432394 8432725 -135849764 - AluSg SINE Alu 0 310 1 15723 69 3 24 chr12 8432725 8433212 -135849277 + HERVL-A1 LTR ERVL 1419 1915 -3739 2369 86 0 0 chr12 8433212 8433514 -135848975 - AluSg SINE Alu -8 302 1 15723 69 3 24 chr12 8433514 8434324 -135848165 + HERVL-A1 LTR ERVL 1915 2664 -2990 2596 39 0 0 chr12 8434324 8434635 -135847854 - AluY SINE Alu 0 311 1 15723 69 3 24 chr12 8434635 8434870 -135847619 + HERVL-A1 LTR ERVL 2664 2902 -2752 1905 83 0 74 chr12 8434870 8435032 -135847457 - AluSg SINE Alu -21 289 159 2070 122 3 3 chr12 8435032 8435336 -135847153 - AluSp SINE Alu -9 304 1 1905 83 0 74 chr12 8435336 8435485 -135847004 - AluSg SINE Alu -151 159 1 1001 89 7 0 chr12 8435485 8435620 -135846869 - AluSq/x SINE Alu -176 136 1 16867 120 36 81 chr12 8435620 8437220 -135845269 + HERVL-A1 LTR ERVL 2932 4601 -1163 2163 81 0 3 chr12 8437220 8437504 -135844985 + AluSx SINE Alu 20 302 -10 1259 101 0 0 chr12 8437504 8437682 -135844807 + AluSg/x SINE Alu 133 310 0 16867 120 36 81 chr12 8437682 8438467 -135844022 + HERVL-A1 LTR ERVL 4600 5418 -346 2173 82 3 30 chr12 8438467 8438770 -135843719 + AluSg SINE Alu 1 295 -15 16867 120 36 81 chr12 8438770 8438908 -135843581 + HERVL-A1 LTR ERVL 5418 5561 -203 2244 83 10 0 chr12 8438908 8439209 -135843280 + AluSp SINE Alu 1 304 -9 16867 120 36 81 chr12 8439209 8439386 -135843103 + HERVL-A1 LTR ERVL 5561 5680 -84 2284 65 14 0 chr12 8439386 8439677 -135842812 - AluY SINE Alu -16 295 1 16867 120 36 81 chr12 8439677 8439752 -135842737 + HERVL-A1 LTR ERVL 5680 5757 -7 2805 91 77 12 chr12 8439752 8440128 -135842361 + MLT2A1 LTR ERVL 1 408 -36 674 34 11 0 chr12 8440128 8440217 -135842272 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 2805 91 77 12 chr12 8440217 8440257 -135842232 + MLT2A1 LTR ERVL 408 444 0 462 263 42 0 chr12 8440257 8440375 -135842114 + L2 LINE L2 2940 3062 -251 6991 128 66 32 chr12 8440375 8441086 -135841403 + Tigger1 DNA MER2_type 1 687 -1731 2120 119 0 10 chr12 8441086 8441398 -135841091 + AluSq SINE Alu 1 309 -4 2234 96 3 0 chr12 8441398 8441699 -135840790 + AluSp SINE Alu 1 303 -10 6991 128 66 32 chr12 8441699 8441765 -135840724 + Tigger1 DNA MER2_type 687 749 -1669 2201 93 10 3 chr12 8441765 8442065 -135840424 - AluSx SINE Alu -10 302 1 6991 128 66 32 chr12 8442065 8442503 -135839986 + Tigger1 DNA MER2_type 749 1259 -1159 25 0 0 0 chr12 8442505 8442530 -135839959 + AT_rich Low_complexity Low_complexity 1 25 0 812 152 0 0 chr12 8442536 8442661 -135839828 + FLAM_C SINE Alu 1 125 -18 1587 117 32 0 chr12 8442661 8442910 -135839579 - L1MA3 LINE L1 -3 6302 6046 1340 135 0 5 chr12 8442919 8443119 -135839370 - AluSg/x SINE Alu -27 283 85 2419 109 3 22 chr12 8443119 8443396 -135839093 - L1MA3 LINE L1 -251 6054 5784 396 59 0 0 chr12 8443396 8443447 -135839042 + (CA)n Simple_repeat Simple_repeat 2 52 0 2419 109 3 22 chr12 8443447 8443536 -135838953 - L1MA3 LINE L1 -521 5784 5695 335 85 34 0 chr12 8443533 8443592 -135838897 - L1MA3 LINE L1 -935 5370 5310 * 2070 147 43 3 chr12 8443593 8443919 -135838570 + Tigger1 DNA MER2_type 1250 1588 -830 969 155 0 133 chr12 8443919 8444183 -135838306 + AluJb SINE Alu 1 229 -83 372 194 0 14 chr12 8444237 8444309 -135838180 + AluJb SINE Alu 232 302 0 5510 110 8 41 chr12 8444338 8444820 -135837669 + Tigger1 DNA MER2_type 1577 2074 -344 2137 97 0 31 chr12 8444820 8445139 -135837350 - AluY SINE Alu -2 309 1 5510 110 8 41 chr12 8445139 8445317 -135837172 + Tigger1 DNA MER2_type 2074 2256 -162 2219 74 0 0 chr12 8445317 8445643 -135836846 - AluY SINE Alu 0 326 1 2161 88 3 3 chr12 8445645 8445942 -135836547 - AluSx SINE Alu -15 297 1 1927 126 0 17 chr12 8445945 8446247 -135836242 - AluSx SINE Alu -15 297 1 5510 110 8 41 chr12 8446247 8446448 -135836041 + Tigger1 DNA MER2_type 2259 2418 0 232 258 97 0 chr12 8446559 8446621 -135835868 + L2 LINE L2 3246 3313 0 2419 77 0 0 chr12 8446694 8447005 -135835484 + AluSx SINE Alu 1 311 -1 1774 142 3 3 chr12 8447037 8447351 -135835138 + AluSq SINE Alu 5 318 0 1194 124 0 0 chr12 8447351 8447528 -135834961 + AluSg/x SINE Alu 133 309 -1 993 89 13 19 chr12 8447722 8447880 -135834609 - BC200 scRNA scRNA -38 162 6 1850 128 14 14 chr12 8448272 8448620 -135833869 + AluSq SINE Alu 1 313 0 1036 82 0 0 chr12 8448680 8448815 -135833674 + AluSq/x SINE Alu 1 135 -178 2128 93 10 7 chr12 8448815 8448939 -135833550 + AluSc SINE Alu 1 123 -186 189 0 0 0 chr12 8448939 8448960 -135833529 + (CA)n Simple_repeat Simple_repeat 2 22 0 2128 93 10 7 chr12 8448960 8449136 -135833353 + AluSc SINE Alu 123 302 -7 246 216 149 27 chr12 8449917 8449991 -135832498 + MIR3 SINE MIR 122 204 -4 2203 93 7 0 chr12 8450730 8451031 -135831458 + AluSq SINE Alu 1 303 -10 2254 79 3 10 chr12 8451469 8451773 -135830716 - AluSp SINE Alu -11 302 1 26 50 0 0 chr12 8451773 8451813 -135830676 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr12 8452025 8452054 -135830435 + AT_rich Low_complexity Low_complexity 1 29 0 2112 58 14 7 chr12 8452952 8453228 -135829261 - AluSp SINE Alu -35 278 1 1949 97 0 17 chr12 8453260 8453578 -135828911 + AluSg1 SINE Alu 1 313 0 22 0 0 0 chr12 8453773 8453795 -135828694 + GC_rich Low_complexity Low_complexity 1 22 0 1622 199 55 81 chr12 8454600 8455093 -135827396 + L1ME3A LINE L1 5343 5822 -348 791 185 7 0 chr12 8455101 8455236 -135827253 + FRAM SINE Alu 23 158 -18 1885 148 3 0 chr12 8455238 8455542 -135826947 + AluSg SINE Alu 1 305 -5 811 227 152 12 chr12 8455560 8455816 -135826673 + L1ME3A LINE L1 5826 6117 -53 2297 92 0 3 chr12 8456086 8456392 -135826097 - AluSg SINE Alu -5 305 1 219 36 0 0 chr12 8456397 8456425 -135826064 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2028 104 4 0 chr12 8456426 8456705 -135825784 - AluSx SINE Alu -32 280 1 247 281 45 34 chr12 8456758 8456847 -135825642 - MIR SINE MIR -81 127 38 1249 163 108 59 chr12 8456986 8457274 -135825215 - AluJo SINE Alu 0 302 1 461 203 106 32 chr12 8457558 8457681 -135824808 - FLAM_A SINE Alu -1 132 1 863 180 6 6 chr12 8457681 8457837 -135824652 - AluJb SINE Alu -14 298 140 2328 77 0 22 chr12 8458157 8458470 -135824019 - AluSx SINE Alu -5 307 2 1959 109 31 7 chr12 8459782 8460075 -135822414 + AluSc SINE Alu 1 300 -9 669 119 10 0 chr12 8460456 8460557 -135821932 - AluSx SINE Alu -17 295 194 1075 71 0 7 chr12 8460558 8460699 -135821790 - AluSx SINE Alu -171 141 2 183 296 45 0 chr12 8460748 8460792 -135821697 - L2 LINE L2 -24 3289 3244 1903 104 47 17 chr12 8460810 8461108 -135821381 + AluSx SINE Alu 6 312 0 2516 39 0 7 chr12 8462457 8462767 -135819722 + AluY SINE Alu 1 308 -3 278 265 112 0 chr12 8463150 8463248 -135819241 + MIR SINE MIR 113 221 -41 1967 113 7 7 chr12 8463362 8463654 -135818835 - AluSg SINE Alu -18 292 1 2123 103 10 0 chr12 8463724 8464016 -135818473 - AluSx SINE Alu -17 295 1 538 183 183 49 chr12 8464068 8464331 -135818158 - L1MC5 LINE L1 -146 7815 7518 679 241 18 12 chr12 8464389 8464555 -135817934 - MIR SINE MIR -37 225 59 416 223 39 23 chr12 8465216 8465346 -135817143 - L1ME LINE L1 -298 5823 5692 619 315 94 9 chr12 8465694 8465907 -135816582 + MIR SINE MIR 6 236 -26 1165 102 12 0 chr12 8466006 8466172 -135816317 - AluSg/x SINE Alu -11 301 134 1943 99 41 3 chr12 8466172 8466466 -135816023 - AluSx SINE Alu -7 305 1 593 188 23 30 chr12 8466500 8466633 -135815856 + FLAM_C SINE Alu 1 132 -1 2168 66 3 78 chr12 8466695 8467027 -135815462 + AluSg SINE Alu 1 307 -3 257 232 20 20 chr12 8467693 8467792 -135814697 + G-rich Low_complexity Low_complexity 2 100 0 198 103 0 0 chr12 8468685 8468714 -135813775 + (TCC)n Simple_repeat Simple_repeat 1 29 0 238 197 175 43 chr12 8471130 8471268 -135811221 - MIR SINE MIR 0 262 13 2031 122 0 0 chr12 8471869 8472185 -135810304 + AluSx SINE Alu 1 316 0 2188 122 0 3 chr12 8475487 8475783 -135806706 - AluSg SINE Alu -15 295 1 239 233 0 0 chr12 8475818 8475878 -135806611 - L2 LINE L2 0 3313 3254 186 43 0 0 chr12 8476250 8476273 -135806216 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1891 130 11 21 chr12 8476285 8476570 -135805919 - AluSx SINE Alu -30 282 1 1769 181 13 7 chr12 8476574 8476872 -135805617 - AluJo SINE Alu -12 300 1 2306 107 0 0 chr12 8476942 8477240 -135805249 - AluSq SINE Alu -15 298 1 2407 98 0 3 chr12 8477996 8478301 -135804188 + AluSq SINE Alu 1 304 -9 185 279 115 0 chr12 8478480 8478541 -135803948 - MIR SINE MIR -109 153 86 210 302 0 0 chr12 8479267 8479320 -135803169 + GA-rich Low_complexity Low_complexity 1 53 0 1394 160 144 0 chr12 8479356 8479619 -135802870 + AluSx SINE Alu 2 302 0 2112 134 0 13 chr12 8480103 8480273 -135802216 - AluSx SINE Alu -9 303 137 2389 85 10 3 chr12 8480273 8480578 -135801911 - AluSx SINE Alu -5 307 1 2112 134 0 13 chr12 8480578 8480714 -135801775 - AluSx SINE Alu -175 137 1 2271 105 0 7 chr12 8480717 8481021 -135801468 - AluSq SINE Alu -11 302 1 460 287 59 44 chr12 8481333 8481654 -135800835 - L1MC5 LINE L1 -33 7928 7603 2367 79 14 0 chr12 8482233 8482525 -135799964 + AluSp SINE Alu 1 296 -17 213 163 0 0 chr12 8482997 8483046 -135799443 + (CAG)n Simple_repeat Simple_repeat 1 49 0 223 330 0 11 chr12 8484150 8484238 -135798251 + MIR SINE MIR 70 156 -106 1834 169 0 23 chr12 8485030 8485338 -135797151 - AluJb SINE Alu -11 301 1 1028 41 0 63 chr12 8485881 8486196 -135796293 + (TTCCC)n Simple_repeat Simple_repeat 1 295 0 2045 136 3 0 chr12 8486197 8486492 -135795997 - AluSx SINE Alu -16 296 1 2041 120 3 23 chr12 8486931 8487230 -135795259 - AluSx SINE Alu -19 293 1 2135 117 14 0 chr12 8487288 8487579 -135794910 - AluY SINE Alu -15 296 2 233 29 29 0 chr12 8488132 8488166 -135794323 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2142 127 3 0 chr12 8490895 8491187 -135791302 + AluSq SINE Alu 1 293 -20 2268 98 0 30 chr12 8491193 8491498 -135790991 + AluSg SINE Alu 1 296 -14 523 258 81 57 chr12 8492458 8492706 -135789783 + HAL1 LINE L1 2252 2505 -2 818 190 67 11 chr12 8493506 8493685 -135788804 - MER5A DNA MER1_type 0 189 1 30 0 0 0 chr12 8495440 8495470 -135787019 + AT_rich Low_complexity Low_complexity 1 30 0 2227 99 0 0 chr12 8495470 8495753 -135786736 - AluSx SINE Alu -25 287 5 337 255 112 0 chr12 8496276 8496437 -135786052 - L1ME4a LINE L1 -5 6116 5938 1722 163 11 3 chr12 8496517 8496823 -135785666 - AluSx SINE Alu 0 308 1 2628 158 30 2 chr12 8496835 8497309 -135785180 - L1MB2 LINE L1 -3 6168 5682 743 167 24 0 chr12 8497397 8497523 -135784966 - FLAM_C SINE Alu 0 133 5 2362 71 3 16 chr12 8497701 8498011 -135784478 - AluSp SINE Alu -7 306 1 2399 92 0 0 chr12 8498012 8498318 -135784171 - AluSg SINE Alu -4 306 1 2104 144 7 0 chr12 8498852 8499157 -135783332 + AluSx SINE Alu 1 307 -5 2253 113 13 0 chr12 8499473 8499775 -135782714 + AluSp SINE Alu 1 306 -7 213 271 51 0 chr12 8499859 8499918 -135782571 - MIR3 SINE MIR -5 203 142 751 179 0 22 chr12 8499918 8499935 -135782554 - FLAM_C SINE Alu -180 132 116 216 0 0 0 chr12 8499935 8499959 -135782530 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 751 179 0 22 chr12 8499959 8500075 -135782414 - FLAM_C SINE Alu -196 116 2 2457 91 0 10 chr12 8500431 8500739 -135781750 + AluSx SINE Alu 1 305 -7 216 156 44 0 chr12 8502131 8502176 -135780313 + (TAGG)n Simple_repeat Simple_repeat 2 48 0 328 278 17 80 chr12 8502550 8502727 -135779762 - L1ME4a LINE L1 -7 6114 5962 1940 145 0 7 chr12 8502727 8503023 -135779466 - AluSx SINE Alu -18 294 1 328 278 17 80 chr12 8503023 8503144 -135779345 - L1ME4a LINE L1 -159 5962 5835 28 48 0 0 chr12 8503248 8503290 -135779199 + AT_rich Low_complexity Low_complexity 1 42 0 2325 99 0 3 chr12 8503478 8503781 -135778708 - AluSq SINE Alu -11 302 1 225 354 44 9 chr12 8503900 8504013 -135778476 - L1ME4a LINE L1 -2143 5665 5549 1142 103 0 7 chr12 8504512 8504658 -135777831 + AluSq/x SINE Alu 1 145 -167 373 302 44 28 chr12 8505301 8505483 -135777006 + MIR3 SINE MIR 23 207 -1 344 306 26 4 chr12 8505626 8505756 -135776733 + MIR SINE MIR 35 168 -40 2445 60 3 22 chr12 8505970 8506285 -135776204 + AluY SINE Alu 1 309 -2 1823 160 17 3 chr12 8506295 8506595 -135775894 + AluJb SINE Alu 9 312 0 203 0 0 36 chr12 8506754 8506782 -135775707 + (CAG)n Simple_repeat Simple_repeat 1 27 0 1877 130 68 10 chr12 8506998 8507291 -135775198 - AluJo SINE Alu -2 310 1 257 263 91 10 chr12 8507380 8507479 -135775010 + MIR SINE MIR 156 262 0 21 71 0 0 chr12 8507738 8507780 -135774709 + AT_rich Low_complexity Low_complexity 1 42 0 1894 183 83 45 chr12 8508053 8508524 -135773965 + LTR2B LTR ERV1 2 490 0 1312 119 5 0 chr12 8508657 8508842 -135773647 + AluSg/x SINE Alu 125 310 -2 2379 86 0 10 chr12 8509017 8509321 -135773168 - AluSc SINE Alu -7 302 2 369 286 141 25 chr12 8509483 8509682 -135772807 - MIR SINE MIR -24 238 17 1121 138 0 0 chr12 8509770 8509930 -135772559 - AluSg/x SINE Alu -16 294 135 1809 154 18 89 chr12 8509930 8509996 -135772493 + MER82 DNA MER2_type 141 210 -443 2171 79 36 0 chr12 8509996 8510274 -135772215 - AluSq SINE Alu -25 288 1 1809 154 18 89 chr12 8510274 8510590 -135771899 + MER82 DNA MER2_type 210 496 -157 445 201 219 18 chr12 8510779 8510943 -135771546 + MIR SINE MIR 66 262 0 383 254 42 17 chr12 8511065 8511183 -135771306 + MIR SINE MIR 92 212 -50 354 91 18 0 chr12 8511499 8511554 -135770935 - AluSp SINE Alu -6 297 242 752 157 50 0 chr12 8511629 8511750 -135770739 - AluSp SINE Alu -64 249 123 398 263 113 31 chr12 8511787 8512189 -135770300 - L1ME3 LINE L1 -211 5951 5449 501 172 0 0 chr12 8512745 8512832 -135769657 - L2 LINE L2 -2 3311 3225 2180 124 3 13 chr12 8513669 8513984 -135768505 - AluSx SINE Alu 0 312 1 208 319 0 28 chr12 8514050 8514122 -135768367 - L2 LINE L2 -2 3270 3201 189 0 0 0 chr12 8514526 8514547 -135767942 + (T)n Simple_repeat Simple_repeat 1 21 0 720 279 83 14 chr12 8515721 8516037 -135766452 - L1ME LINE L1 -362 5800 5468 387 0 0 0 chr12 8517837 8517880 -135764609 + (CA)n Simple_repeat Simple_repeat 1 43 0 191 193 0 0 chr12 8518304 8518349 -135764140 + MIR SINE MIR 108 142 -66 2271 117 7 0 chr12 8518481 8518788 -135763701 - AluSg SINE Alu -1 309 1 1789 170 0 16 chr12 8518792 8519104 -135763385 - AluJo SINE Alu -5 307 1 1478 78 165 0 chr12 8519495 8519725 -135762764 - L1PA7 LINE L1 0 6154 5887 295 298 12 0 chr12 8519851 8519935 -135762554 + L2 LINE L2 3188 3272 0 2297 101 0 13 chr12 8520072 8520380 -135762109 - AluSg SINE Alu -6 304 1 324 273 71 60 chr12 8520637 8520750 -135761739 + MIR SINE MIR 72 189 -73 2207 129 0 16 chr12 8520750 8521067 -135761422 - AluSx SINE Alu 0 312 1 324 273 71 60 chr12 8521067 8521136 -135761353 + MIR SINE MIR 189 256 -6 2156 116 3 7 chr12 8521393 8521695 -135760794 + AluSx SINE Alu 1 301 -11 1955 104 30 11 chr12 8521718 8521987 -135760502 + AluSx SINE Alu 3 276 -36 297 0 0 0 chr12 8521991 8522024 -135760465 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 33 0 0 chr12 8522058 8522088 -135760401 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr12 8522318 8522350 -135760139 + AT_rich Low_complexity Low_complexity 1 32 0 1011 196 11 0 chr12 8522585 8522769 -135759720 - AluJo SINE Alu -11 301 116 2282 253 84 46 chr12 8523240 8524286 -135758203 + L2 LINE L2 2239 3305 -8 1958 124 38 0 chr12 8524432 8524723 -135757766 - AluSx SINE Alu -10 302 1 1901 108 31 0 chr12 8525622 8525881 -135756608 + AluSq SINE Alu 34 300 -13 834 259 75 19 chr12 8525988 8526200 -135756289 - MER58A DNA MER1_type 0 224 1 3644 123 48 0 chr12 8526283 8526786 -135755703 - MER1A DNA MER1_type 0 527 1 665 312 146 14 chr12 8527424 8527719 -135754770 + LTR16C LTR ERVL 158 491 0 408 287 39 116 chr12 8528358 8528519 -135753970 + MIR SINE MIR 15 187 -75 1865 150 21 7 chr12 8528519 8528806 -135753683 + AluJb SINE Alu 13 303 -9 222 37 0 0 chr12 8528809 8528836 -135753653 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 408 287 39 116 chr12 8528836 8528928 -135753561 + MIR SINE MIR 189 252 -10 3689 166 22 42 chr12 8529279 8529531 -135752958 - L1MD2 LINE L1 0 6359 6104 1900 172 3 0 chr12 8529531 8529828 -135752661 - AluJo SINE Alu -14 298 1 3689 166 22 42 chr12 8529828 8530293 -135752196 - L1MD2 LINE L1 -255 6104 5656 2941 3 0 0 chr12 8530298 8530610 -135751879 - AluYb8 SINE Alu -6 312 1 1622 204 18 0 chr12 8533241 8533526 -135748963 + AluJo SINE Alu 11 300 -12 2202 117 7 0 chr12 8533536 8533834 -135748655 + AluSx SINE Alu 1 300 -12 2807 204 90 64 chr12 8533849 8533924 -135748565 + L1MA9 LINE L1 3166 3238 -4327 929 145 0 0 chr12 8533924 8534055 -135748434 + FLAM_C SINE Alu 1 131 -2 2807 204 90 64 chr12 8534055 8534537 -135747952 + L1MA9 LINE L1 3238 3706 -3859 3057 164 27 40 chr12 8534537 8534660 -135747829 + MER44D DNA MER2_type 4 127 -2360 2556 37 10 3 chr12 8534660 8534959 -135747530 + AluY SINE Alu 1 301 -10 3057 164 27 40 chr12 8534959 8535389 -135747100 + MER44D DNA MER2_type 127 605 0 2807 204 90 64 chr12 8535389 8535476 -135747013 + L1MA9 LINE L1 3706 3789 -3776 2152 121 14 0 chr12 8535476 8535773 -135746716 - AluSx SINE Alu -11 301 1 2807 204 90 64 chr12 8535773 8535841 -135746648 + L1MA9 LINE L1 3789 3854 -3711 351 21 0 0 chr12 8535841 8535888 -135746601 - MER41A LTR ERV1 -87 467 421 2807 204 90 64 chr12 8535888 8536468 -135746021 + L1MA9 LINE L1 3854 4560 -3005 2422 90 0 0 chr12 8536468 8536768 -135745721 + AluSg SINE Alu 1 300 -10 2807 204 90 64 chr12 8536768 8536788 -135745701 + L1MA9 LINE L1 4560 4578 -2987 3715 141 31 27 chr12 8536805 8537468 -135745021 + L1MA9 LINE L1 4975 5643 -1922 2447 144 71 2 chr12 8537468 8537885 -135744604 + L1MA9 LINE L1 7279 7731 0 3715 141 31 27 chr12 8537885 8537896 -135744593 + L1MA9 LINE L1 5643 5652 -1913 2302 94 7 0 chr12 8538439 8538746 -135743743 - AluY SINE Alu -2 309 1 181 393 105 20 chr12 8538798 8539093 -135743396 + L2 LINE L2 2948 3267 -5 13283 178 20 13 chr12 8539630 8540403 -135742086 - L1PA15 LINE L1 -2 6163 5397 2405 87 0 10 chr12 8540403 8540712 -135741777 - AluSg SINE Alu -4 306 1 13283 178 20 13 chr12 8540712 8543264 -135739225 - L1PA15 LINE L1 -768 5397 2834 621 241 71 18 chr12 8544430 8544600 -135737889 + MIR SINE MIR 2 180 -82 814 210 0 6 chr12 8544629 8544786 -135737703 + FRAM SINE Alu 1 153 -23 235 250 0 0 chr12 8544802 8544854 -135737635 + L2 LINE L2 3251 3302 -11 314 223 80 78 chr12 8545190 8545408 -135737081 - MIR SINE MIR -13 249 76 2399 75 3 0 chr12 8545940 8546234 -135736255 - AluY SINE Alu -16 295 1 2282 106 3 0 chr12 8546241 8546542 -135735947 - AluSx SINE Alu -10 302 1 38 51 0 0 chr12 8546599 8546658 -135735831 + AT_rich Low_complexity Low_complexity 1 59 0 305 253 105 19 chr12 8546738 8546900 -135735589 - L1ME LINE L1 -329 5792 5617 1112 98 24 37 chr12 8546925 8546972 -135735517 - L1PA16 LINE L1 -10 6156 6110 420 55 0 0 chr12 8546972 8547027 -135735462 + (TG)n Simple_repeat Simple_repeat 2 56 0 2243 109 3 0 chr12 8547028 8547330 -135735159 - AluSp SINE Alu -10 303 1 1112 98 24 37 chr12 8547330 8547444 -135735045 - L1PA16 LINE L1 -55 6111 5995 23 33 0 0 chr12 8547546 8547576 -135734913 + AT_rich Low_complexity Low_complexity 1 30 0 481 342 22 13 chr12 8547656 8547887 -135734602 - L1MEd LINE L1 -5394 725 493 3643 27 2 0 chr12 8548029 8548435 -135734054 - L1PA4 LINE L1 0 6155 5749 629 316 43 23 chr12 8548800 8549056 -135733433 - LTR16C LTR ERVL -94 397 137 473 239 56 56 chr12 8549217 8549305 -135733184 - L1MC4 LINE L1 -1044 6998 6908 2635 40 0 0 chr12 8549305 8549606 -135732883 - AluY SINE Alu -10 301 1 473 239 56 56 chr12 8549606 8549659 -135732830 - L1MC4 LINE L1 -1133 6909 6857 261 330 168 11 chr12 8549667 8549852 -135732637 - L1MEd LINE L1 -5664 455 242 633 296 103 38 chr12 8549885 8550311 -135732178 - ERVL LTR ERVL -2318 3446 2993 866 187 58 0 chr12 8550367 8550522 -135731967 - MER5A DNA MER1_type -25 164 1 1189 278 83 83 chr12 8550553 8550862 -135731627 - ERVL LTR ERVL -2931 2833 2525 1702 158 0 85 chr12 8550862 8551037 -135731452 - AluJb SINE Alu -23 289 151 2094 125 7 3 chr12 8551037 8551324 -135731165 - AluSx SINE Alu -24 288 1 1702 158 0 85 chr12 8551324 8551464 -135731025 - AluJb SINE Alu -161 151 1 1189 278 83 83 chr12 8551464 8551878 -135730611 - ERVL LTR ERVL -3238 2526 2110 2268 120 7 0 chr12 8552292 8552601 -135729888 - AluSx SINE Alu -1 311 1 244 167 183 17 chr12 8552873 8552933 -135729556 - LTR67 LTR ERVL -478 79 10 1034 214 96 84 chr12 8552947 8553363 -135729126 - LTR34 LTR ERV1 -4 695 275 276 95 0 0 chr12 8553363 8553405 -135729084 + L1MB7 LINE L1 5793 5834 -350 1212 219 78 62 chr12 8553405 8553431 -135729058 + MLT1A1 LTR MaLR 1 25 -340 2506 118 90 18 chr12 8553431 8553830 -135728659 - MSTA LTR MaLR 0 428 1 1212 219 78 62 chr12 8553830 8554160 -135728329 + MLT1A1 LTR MaLR 25 363 -2 291 149 0 0 chr12 8554161 8554208 -135728281 + L1MB7 LINE L1 5829 5875 -309 2076 139 3 0 chr12 8554277 8554586 -135727903 - AluSq SINE Alu -3 310 1 1291 256 56 115 chr12 8554791 8555529 -135726960 - MER21B LTR ERV1 -146 717 24 525 259 42 17 chr12 8555550 8555813 -135726676 - Charlie7 DNA MER1_type -2294 318 1 334 256 11 131 chr12 8556067 8556243 -135726246 + MLT1I LTR MaLR 237 391 -18 911 224 56 0 chr12 8557683 8557915 -135724574 + L1MC4 LINE L1 6460 6704 -1338 484 245 92 31 chr12 8560177 8560471 -135722018 + L1ME4a LINE L1 5789 6100 -21 1569 174 0 52 chr12 8561295 8561582 -135720907 - AluSx SINE Alu -40 272 1 298 339 139 38 chr12 8561646 8562038 -135720451 - L2 LINE L2 -6 3266 2771 2005 249 51 10 chr12 8562058 8562572 -135719917 - MLT1H LTR MaLR -2 547 13 943 329 158 21 chr12 8562590 8563471 -135719018 - L2 LINE L2 -566 2748 1711 2128 101 42 0 chr12 8563471 8563759 -135718730 - AluSg SINE Alu -10 300 1 943 329 158 21 chr12 8563759 8563882 -135718607 - L2 LINE L2 -1603 1711 1606 2183 112 3 10 chr12 8564574 8564879 -135717610 + AluSc SINE Alu 2 304 -5 1980 172 0 0 chr12 8564895 8565198 -135717291 - AluJb SINE Alu -9 303 1 26 0 0 0 chr12 8565399 8565425 -135717064 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr12 8565426 8565450 -135717039 + (TTA)n Simple_repeat Simple_repeat 2 25 0 491 185 22 44 chr12 8665999 8666134 -135616355 + FLAM_C SINE Alu 2 133 -10 487 284 147 10 chr12 8667101 8667298 -135615191 + MIR SINE MIR 34 257 -5 268 297 141 39 chr12 8667363 8667491 -135614998 - MIR3 SINE MIR -18 190 50 2436 70 6 21 chr12 8668074 8668402 -135614087 + L1PA7 LINE L1 5831 6153 -1 33 0 0 0 chr12 8668405 8668438 -135614051 + AT_rich Low_complexity Low_complexity 1 33 0 845 268 105 60 chr12 8668449 8668897 -135613592 - L1M4 LINE L1 -1911 4235 3768 258 32 0 0 chr12 8668917 8668948 -135613541 + (CA)n Simple_repeat Simple_repeat 2 32 0 1227 201 29 33 chr12 8668970 8669244 -135613245 - AluJb SINE Alu -3 309 37 841 99 14 57 chr12 8669482 8669623 -135612866 - Tigger5 DNA MER2_type -104 2219 2085 * 1165 224 9 22 chr12 8669619 8669851 -135612638 - Tigger5 DNA MER2_type -2091 232 4 308 276 69 14 chr12 8669853 8669998 -135612491 + L1M4 LINE L1 4485 4637 -1509 514 264 64 18 chr12 8670006 8670383 -135612106 + MLT1C LTR MaLR 6 461 -6 39 22 0 0 chr12 8671378 8671424 -135611065 + AT_rich Low_complexity Low_complexity 1 46 0 2001 157 0 0 chr12 8671833 8672132 -135610357 - AluSx SINE Alu -13 299 1 725 139 0 0 chr12 8672320 8672435 -135610054 - AluSp/q SINE Alu 0 313 199 1786 168 10 7 chr12 8672612 8672903 -135609586 + AluJb SINE Alu 1 292 -20 815 252 82 50 chr12 8673667 8674008 -135608481 + MLT2C1 LTR ERVL 44 395 -2 225 263 50 25 chr12 8674422 8674502 -135607987 - L1ME4a LINE L1 -104 6017 5936 216 0 0 0 chr12 8674543 8674567 -135607922 + (CA)n Simple_repeat Simple_repeat 2 25 0 962 175 24 0 chr12 8674611 8674777 -135607712 - AluJb SINE Alu -7 305 136 2095 144 0 0 chr12 8674779 8675085 -135607404 - AluSx SINE Alu -6 306 1 746 170 7 0 chr12 8675252 8675399 -135607090 + G-rich Low_complexity Low_complexity 5 152 0 360 0 0 0 chr12 8675401 8675441 -135607048 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 681 221 0 0 chr12 8675474 8675601 -135606888 + AluJo SINE Alu 1 127 -185 30 0 0 0 chr12 8675601 8675631 -135606858 + AT_rich Low_complexity Low_complexity 1 30 0 898 141 7 0 chr12 8675631 8675766 -135606723 - AluJb SINE Alu -176 136 1 1962 130 0 3 chr12 8675775 8676085 -135606404 - AluJb SINE Alu 0 309 1 890 189 0 78 chr12 8676085 8676247 -135606242 + AluJo SINE Alu 115 261 -51 2590 131 43 11 chr12 8676247 8676691 -135605798 - LTR22A LTR ERVK 0 458 1 890 189 0 78 chr12 8676691 8676719 -135605770 + AluJo SINE Alu 261 290 -22 1965 149 0 3 chr12 8676854 8677143 -135605346 + AluSx SINE Alu 1 288 -24 251 241 0 17 chr12 8677270 8677328 -135605161 + MER74B LTR ERVL 292 348 -274 693 281 61 40 chr12 8677343 8677556 -135604933 - MER74A LTR ERVL -306 252 32 2235 104 7 0 chr12 8677556 8677853 -135604636 - AluSq SINE Alu -14 299 1 693 281 61 40 chr12 8677853 8677867 -135604622 - MER74A LTR ERVL -526 32 20 1980 147 10 0 chr12 8677946 8678245 -135604244 - AluSx SINE Alu -10 302 1 858 165 0 0 chr12 8678267 8678400 -135604089 + AluJo SINE Alu 1 133 -169 938 141 60 0 chr12 8679893 8680042 -135602447 - FAM SINE Alu -18 167 10 349 82 279 0 chr12 8680059 8680120 -135602369 - MADE1 DNA Mariner 0 80 3 596 200 0 0 chr12 8680148 8680253 -135602236 + AluJo SINE Alu 131 235 -77 819 251 45 10 chr12 8680665 8680864 -135601625 - L1MCa LINE L1 -5684 742 537 801 153 62 157 chr12 8680911 8681185 -135601304 - AluJb SINE Alu -16 296 49 1713 205 113 98 chr12 8681244 8682008 -135600481 - LTR1B LTR ERV1 -39 981 3 348 194 119 0 chr12 8682008 8682062 -135600427 - AluS SINE Alu -246 62 1 1168 103 132 10 chr12 8682100 8682304 -135600185 - L1M3 LINE L1 -626 5557 5329 1596 167 14 22 chr12 8682409 8682684 -135599805 - AluJo SINE Alu -39 273 1 2169 125 0 13 chr12 8683031 8683336 -135599153 - AluSx SINE Alu -11 301 1 2338 98 0 3 chr12 8683389 8683694 -135598795 - AluSq SINE Alu -9 304 1 285 258 50 31 chr12 8683822 8683981 -135598508 - L1MEc LINE L1 -4674 1722 1561 349 205 26 0 chr12 8684810 8684888 -135597601 + MIR SINE MIR 183 262 0 663 263 34 0 chr12 8685108 8685283 -135597206 - MIR SINE MIR -10 252 72 2555 61 0 6 chr12 8686137 8686448 -135596041 + AluY SINE Alu 1 309 -2 572 290 80 9 chr12 8687066 8687290 -135595199 + LTR33 LTR ERVL 273 512 -9 2504 91 0 0 chr12 8687742 8688049 -135594440 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr12 8688124 8688153 -135594336 + AT_rich Low_complexity Low_complexity 1 29 0 210 191 0 0 chr12 8688281 8688323 -135594166 + A-rich Low_complexity Low_complexity 5 46 0 3078 147 19 33 chr12 8688500 8689039 -135593450 - LTR26B LTR ERV1 0 531 1 2196 119 0 0 chr12 8689082 8689376 -135593113 + AluSx SINE Alu 1 294 -18 2553 66 0 0 chr12 8689483 8689785 -135592704 + AluSq SINE Alu 1 302 -11 872 137 0 0 chr12 8690050 8690174 -135592315 + FLAM_C SINE Alu 3 126 -7 2157 117 0 0 chr12 8690193 8690495 -135591994 + AluSx SINE Alu 2 303 0 2471 132 28 8 chr12 8690524 8690917 -135591572 + MSTA LTR MaLR 1 401 -27 1942 160 0 25 chr12 8690927 8691245 -135591244 - AluJo SINE Alu -1 311 2 1696 188 0 25 chr12 8691699 8691768 -135590721 + AluJo SINE Alu 1 70 -242 7780 68 13 11 chr12 8691768 8692773 -135589716 + LTR13 LTR ERVK 1 1007 0 1696 188 0 25 chr12 8692773 8693017 -135589472 + AluJo SINE Alu 70 306 -6 1650 186 6 19 chr12 8693066 8693378 -135589111 + AluJo SINE Alu 5 312 0 303 128 141 26 chr12 8693671 8693749 -135588740 + MER88 LTR ERVL 79 165 -299 * 700 233 92 33 chr12 8693679 8693919 -135588570 - MER74B LTR ERVL -72 550 297 21 0 0 0 chr12 8694072 8694093 -135588396 + AT_rich Low_complexity Low_complexity 1 21 0 220 347 11 23 chr12 8694113 8694289 -135588200 + GA-rich Low_complexity Low_complexity 2 175 0 1969 152 0 3 chr12 8694548 8694837 -135587652 + AluSx SINE Alu 1 288 -24 194 333 0 0 chr12 8694912 8694963 -135587526 - L2 LINE L2 -688 2626 2576 1494 213 3 45 chr12 8694963 8695137 -135587352 - MER90 LTR ERV1 0 614 461 2853 209 24 59 chr12 8695137 8695167 -135587322 + LTR62 LTR ERVK 2 32 -687 1906 128 42 3 chr12 8695167 8695456 -135587033 + AluSx SINE Alu 1 300 -12 2853 209 24 59 chr12 8695456 8696167 -135586322 + LTR62 LTR ERVK 32 717 -2 1494 213 3 45 chr12 8696167 8696345 -135586144 - MER90 LTR ERV1 -153 461 277 658 227 39 99 chr12 8696484 8696766 -135585723 - MER90 LTR ERV1 -310 265 1 193 329 14 0 chr12 8696852 8696922 -135585567 - L2 LINE L2 -843 2471 2401 31 0 0 0 chr12 8696959 8696990 -135585499 + AT_rich Low_complexity Low_complexity 1 31 0 1825 142 4 4 chr12 8696990 8697264 -135585225 - AluJo SINE Alu -26 286 13 188 198 37 86 chr12 8697280 8697361 -135585128 - MIR SINE MIR -105 157 81 2053 152 3 0 chr12 8697409 8697706 -135584783 + AluSx SINE Alu 1 298 -14 4220 159 28 23 chr12 8697736 8698534 -135583955 - L1MB7 LINE L1 -111 6073 5272 1741 181 3 7 chr12 8698548 8698857 -135583632 - AluJb SINE Alu -4 308 1 228 135 0 0 chr12 8698857 8698894 -135583595 - L1MB7 LINE L1 -863 5283 5247 2082 183 56 49 chr12 8698909 8699357 -135583132 - MER21A LTR ERV1 -19 912 462 1255 167 27 69 chr12 8699446 8699578 -135582911 - MER21A LTR ERV1 -185 468 332 2268 113 0 0 chr12 8699578 8699879 -135582610 + AluSx SINE Alu 1 301 -11 1255 167 27 69 chr12 8699879 8700067 -135582422 - MER21A LTR ERV1 -321 332 187 327 196 0 0 chr12 8700064 8700115 -135582374 - AluSc SINE Alu -117 182 132 * 609 200 17 8 chr12 8700116 8700236 -135582253 - FLAM_A SINE Alu -11 122 2 1191 150 39 6 chr12 8700236 8700554 -135581935 - MER39B LTR ERV1 -384 269 1 1910 229 9 9 chr12 8700555 8701005 -135581484 - L1MB7 LINE L1 -894 5252 4803 21 0 0 0 chr12 8701313 8701334 -135581155 + AT_rich Low_complexity Low_complexity 1 21 0 192 71 0 0 chr12 8701635 8701655 -135580834 + (TC)n Simple_repeat Simple_repeat 1 23 -5 2430 86 0 0 chr12 8701655 8701956 -135580533 - AluSq SINE Alu -12 301 1 192 71 0 0 chr12 8701956 8701963 -135580526 + (TC)n Simple_repeat Simple_repeat 22 28 0 803 176 0 0 chr12 8701963 8702094 -135580395 - FLAM_A SINE Alu -1 141 11 258 105 0 0 chr12 8703322 8703360 -135579129 + (A)n Simple_repeat Simple_repeat 1 38 0 185 188 138 50 chr12 8704429 8704509 -135577980 - MIR SINE MIR -146 116 30 601 338 84 20 chr12 8706192 8706689 -135575800 + L2 LINE L2 2265 2793 -521 1268 128 8 91 chr12 8706727 8706969 -135575520 - AluSg/x SINE Alu -6 306 85 1422 54 0 0 chr12 8707091 8707259 -135575230 + SVA Other Other 1219 1386 0 198 91 0 0 chr12 8707304 8707337 -135575152 + (A)n Simple_repeat Simple_repeat 1 33 0 1801 168 31 0 chr12 8707397 8707688 -135574801 - AluJb SINE Alu -12 300 1 2102 139 0 25 chr12 8708033 8708349 -135574140 - AluJb SINE Alu -4 308 1 1351 149 0 19 chr12 8708467 8708681 -135573808 - MER2 DNA MER2_type -135 210 1 1961 150 17 3 chr12 8708995 8709289 -135573200 - AluJo SINE Alu -13 299 2 410 267 87 7 chr12 8710734 8710884 -135571605 - MIR SINE MIR -1 261 100 788 161 0 0 chr12 8710914 8711038 -135571451 + FLAM_C SINE Alu 1 124 -9 7476 42 11 1 chr12 8711173 8712506 -135569983 + L1PA8 LINE L1 4830 6172 0 202 184 0 0 chr12 8712816 8712854 -135569635 + MIR3 SINE MIR 150 187 -21 2511 50 0 3 chr12 8713385 8713688 -135568801 - AluY SINE Alu -9 302 1 1136 184 23 97 chr12 8714116 8714330 -135568159 + L1MB5 LINE L1 5882 6050 -124 2547 48 0 13 chr12 8714330 8714645 -135567844 + AluY SINE Alu 1 311 0 1136 184 23 97 chr12 8714645 8714762 -135567727 + L1MB5 LINE L1 6050 6174 0 6378 115 33 12 chr12 8716134 8717083 -135565406 + LTR5 LTR ERVK 1 969 0 2255 84 28 0 chr12 8719208 8719495 -135562994 + AluSg SINE Alu 1 295 -15 342 258 136 0 chr12 8719611 8719743 -135562746 - MIR SINE MIR -7 255 106 1499 145 48 54 chr12 8719760 8720260 -135562229 + LTR47A LTR ERVL 2 450 -2 280 221 29 15 chr12 8720262 8720330 -135562159 - MIR SINE MIR -191 71 3 540 229 0 36 chr12 8720567 8720707 -135561782 - FLAM_A SINE Alu -2 140 6 1905 139 34 10 chr12 8720982 8721277 -135561212 + AluSx SINE Alu 9 310 -2 188 224 140 84 chr12 8721492 8721599 -135560890 + MIR SINE MIR 53 165 -97 189 0 0 0 chr12 8721659 8721680 -135560809 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1200 192 73 73 chr12 8721812 8722109 -135560380 - MSTD LTR MaLR 0 396 100 2211 126 0 16 chr12 8722109 8722426 -135560063 - AluSx SINE Alu 0 312 1 2030 118 4 4 chr12 8722433 8722712 -135559777 - AluSq SINE Alu -12 301 23 1200 192 73 73 chr12 8722712 8722802 -135559687 - MSTD LTR MaLR -301 95 1 24 60 0 30 chr12 8722846 8722882 -135559607 + AT_rich Low_complexity Low_complexity 1 36 -29 1426 178 85 0 chr12 8722882 8723141 -135559348 - AluJo SINE Alu -31 281 1 24 60 0 30 chr12 8723141 8723171 -135559318 + AT_rich Low_complexity Low_complexity 36 65 0 717 209 0 8 chr12 8723172 8723306 -135559183 + FLAM_C SINE Alu 1 133 0 2388 27 44 14 chr12 8723791 8724088 -135558401 - AluY SINE Alu -5 306 1 1147 124 0 0 chr12 8724198 8724351 -135558138 - AluSq SINE Alu -160 153 1 276 30 0 0 chr12 8725119 8725152 -135557337 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 2319 94 0 7 chr12 8726183 8726482 -135556007 - AluSq SINE Alu -16 297 1 23 0 0 0 chr12 8727234 8727257 -135555232 + AT_rich Low_complexity Low_complexity 1 23 0 2223 111 0 0 chr12 8727257 8727545 -135554944 - AluSq SINE Alu -24 289 2 330 322 34 42 chr12 8727557 8727675 -135554814 - MIR3 SINE MIR -52 156 40 409 247 35 46 chr12 8728933 8729107 -135553382 + MIR SINE MIR 48 219 -43 2415 96 6 0 chr12 8730400 8730733 -135551756 - L1PB2 LINE L1 -3 6148 5814 2203 102 0 0 chr12 8731496 8731823 -135550666 + AluSx SINE Alu 1 327 0 187 270 0 0 chr12 8731884 8731921 -135550568 + MER5B DNA MER1_type 1 37 -141 2166 127 0 0 chr12 8732774 8733092 -135549397 + AluSx SINE Alu 1 318 0 450 294 83 34 chr12 8733254 8733519 -135548970 + L2 LINE L2 2184 2461 -853 2419 96 0 6 chr12 8733519 8733832 -135548657 + AluSq SINE Alu 1 311 -2 180 341 49 0 chr12 8733886 8733968 -135548521 + L2 LINE L2 2564 2649 -665 282 338 19 57 chr12 8734132 8734289 -135548200 + L2 LINE L2 2942 3092 -180 2067 116 0 3 chr12 8734473 8734758 -135547731 + AluSq SINE Alu 20 303 -10 32 26 0 0 chr12 8735230 8735269 -135547220 + AT_rich Low_complexity Low_complexity 1 39 0 2083 127 17 0 chr12 8735279 8735570 -135546919 + AluSx SINE Alu 5 300 -12 1815 146 53 26 chr12 8735625 8735927 -135546562 + AluSg SINE Alu 1 310 0 180 0 0 0 chr12 8736365 8736385 -135546104 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2484 34 41 0 chr12 8736668 8736959 -135545530 - AluY SINE Alu -8 303 1 1126 113 38 0 chr12 8737028 8737187 -135545302 - AluSg/x SINE Alu -15 295 131 426 85 0 0 chr12 8737187 8737203 -135545286 + (CA)n Simple_repeat Simple_repeat 1 75 0 426 85 0 0 chr12 8737203 8737262 -135545227 + (CA)n Simple_repeat Simple_repeat 2 60 0 2277 84 3 17 chr12 8737280 8737579 -135544910 - AluSq SINE Alu -18 295 1 679 209 11 37 chr12 8737589 8737776 -135544713 + L1MA9 LINE L1 6109 6290 -22 1154 82 7 0 chr12 8737871 8738017 -135544472 + AluSp SINE Alu 123 269 -44 1994 135 14 3 chr12 8738197 8738486 -135544003 + AluSx SINE Alu 1 292 -20 1604 170 13 35 chr12 8738957 8739157 -135543332 - AluJo SINE Alu -7 305 113 2087 133 7 3 chr12 8739157 8739459 -135543030 + AluSq SINE Alu 1 303 -10 1604 170 13 35 chr12 8739459 8739569 -135542920 - AluJo SINE Alu -199 113 2 578 258 28 65 chr12 8739833 8740050 -135542439 + MER112 DNA MER1_type 23 231 -29 1804 153 14 7 chr12 8740308 8740602 -135541887 - AluJo SINE Alu -1 311 16 541 146 115 92 chr12 8741676 8741806 -135540683 - FLAM_C SINE Alu 0 133 1 920 140 0 0 chr12 8743298 8743434 -135539055 - AluSp/q SINE Alu -1 312 177 1342 142 14 14 chr12 8743945 8744156 -135538333 - AluJo SINE Alu -15 297 87 273 57 0 0 chr12 8744455 8744490 -135537999 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 2098 129 30 0 chr12 8745197 8745499 -135536990 - AluSx SINE Alu -1 311 1 215 343 0 0 chr12 8746307 8746374 -135536115 + L2 LINE L2 2992 3058 -214 930 144 0 0 chr12 8746506 8746638 -135535851 - FLAM_C SINE Alu -11 132 1 339 102 0 0 chr12 8746722 8746792 -135535697 + FLAM_A SINE Alu 85 154 0 2297 97 3 0 chr12 8746795 8747085 -135535404 - AluY SINE Alu -20 291 1 2310 115 0 3 chr12 8747085 8747389 -135535100 - AluSx SINE Alu -9 303 1 1054 157 0 0 chr12 8747408 8747561 -135534928 + FRAM SINE Alu 5 157 -19 22 56 0 0 chr12 8748255 8748291 -135534198 + AT_rich Low_complexity Low_complexity 1 36 0 1499 239 78 80 chr12 8748292 8748331 -135534158 + MLT1F1 LTR MaLR 6 44 -523 2004 127 0 3 chr12 8748331 8748636 -135533853 - AluSx SINE Alu 0 304 1 1499 239 78 80 chr12 8748636 8749131 -135533358 + MLT1F1 LTR MaLR 44 565 -2 202 157 48 36 chr12 8749155 8749214 -135533275 + (TA)n Simple_repeat Simple_repeat 1 63 -21 2503 134 53 7 chr12 8749214 8749625 -135532864 - MSTB1 LTR MaLR -2 430 1 202 157 48 36 chr12 8749625 8749648 -135532841 + (TA)n Simple_repeat Simple_repeat 63 84 0 258 317 10 10 chr12 8749838 8749939 -135532550 + GA-rich Low_complexity Low_complexity 3 103 0 2766 42 0 0 chr12 8749941 8750250 -135532239 + AluY SINE Alu 1 309 -2 638 92 122 0 chr12 8750258 8750356 -135532133 - THE1A LTR MaLR -245 110 1 7990 111 6 3 chr12 8750356 8751434 -135531055 - THE1A-int LTR MaLR 0 1580 496 2125 129 6 3 chr12 8751434 8751745 -135530744 - AluSp SINE Alu -1 312 1 7990 111 6 3 chr12 8751745 8751757 -135530732 - THE1A-int LTR MaLR -1084 496 486 482 135 21 21 chr12 8751900 8751996 -135530493 - AluSg1 SINE Alu -212 97 2 2276 125 0 0 chr12 8752076 8752388 -135530101 + AluSq SINE Alu 1 312 -1 24 32 0 0 chr12 8752442 8752473 -135530016 + AT_rich Low_complexity Low_complexity 1 31 0 585 224 80 50 chr12 8753044 8753245 -135529244 - L1ME1 LINE L1 0 6166 5960 705 199 7 7 chr12 8753245 8753381 -135529108 - FLAM_C SINE Alu -4 139 4 1120 194 95 11 chr12 8753383 8753667 -135528822 - L1ME1 LINE L1 -198 5968 5661 1962 138 23 7 chr12 8753788 8754093 -135528396 - AluJb SINE Alu -2 310 1 22 0 0 0 chr12 8754214 8754236 -135528253 + AT_rich Low_complexity Low_complexity 1 22 0 828 230 6 0 chr12 8754263 8754437 -135528052 + FRAM SINE Alu 1 175 -1 462 18 0 0 chr12 8754755 8754810 -135527679 + (TG)n Simple_repeat Simple_repeat 1 55 0 653 161 42 17 chr12 8755534 8755652 -135526837 + FLAM_C SINE Alu 5 125 -18 278 352 9 9 chr12 8757460 8757565 -135524924 - L2 LINE L2 0 3272 3168 * 1832 243 84 16 chr12 8757558 8757635 -135524854 + L2 LINE L2 2183 2253 -1061 2565 96 34 6 chr12 8757635 8757989 -135524500 - THE1B LTR MaLR 0 364 1 1832 243 84 16 chr12 8757989 8758553 -135523936 + L2 LINE L2 2253 2868 -446 38 39 0 0 chr12 8758859 8758911 -135523578 + AT_rich Low_complexity Low_complexity 1 52 0 1789 153 3 7 chr12 8758911 8759198 -135523291 - AluJb SINE Alu -26 286 1 4460 130 19 87 chr12 8759474 8759652 -135522837 - L1MA9 LINE L1 -30 6282 6093 1748 167 13 20 chr12 8759652 8759951 -135522538 - AluJb SINE Alu -15 297 1 4460 130 19 87 chr12 8759951 8760103 -135522386 - L1MA9 LINE L1 -219 6093 5932 2413 97 0 3 chr12 8760103 8760414 -135522075 - AluSx SINE Alu -2 310 1 4460 130 19 87 chr12 8760414 8760979 -135521510 - L1MA9 LINE L1 -380 5932 5447 2416 83 0 22 chr12 8761027 8761341 -135521148 + AluSx SINE Alu 1 307 -5 3078 196 57 76 chr12 8761363 8761745 -135520744 - MER21B LTR ERV1 -19 844 456 1990 145 3 10 chr12 8761745 8762042 -135520447 + AluSx SINE Alu 1 295 -17 3078 196 57 76 chr12 8762042 8762506 -135519983 - MER21B LTR ERV1 -407 456 14 930 116 14 0 chr12 8762523 8762669 -135519820 - L1MA9 LINE L1 -861 5451 5304 1697 243 48 42 chr12 8762670 8762704 -135519785 + LTR24B LTR ERV1 1 33 -543 2199 115 11 0 chr12 8762704 8762991 -135519498 + AluSq SINE Alu 1 290 -23 1697 243 48 42 chr12 8762991 8763548 -135518941 + LTR24B LTR ERV1 33 569 -7 6839 174 40 48 chr12 8763550 8763612 -135518877 - L1 LINE L1 -844 5302 5241 1947 150 0 13 chr12 8763612 8763912 -135518577 - AluJb SINE Alu -16 296 1 6839 174 40 48 chr12 8763912 8764337 -135518152 - L1 LINE L1 -905 5241 4814 2102 113 18 0 chr12 8764337 8764612 -135517877 + AluSx SINE Alu 5 287 -25 204 40 0 0 chr12 8764612 8764637 -135517852 + (CA)n Simple_repeat Simple_repeat 2 26 0 6839 174 40 48 chr12 8764644 8764932 -135517557 - L1 LINE L1 -1332 4814 4525 1849 157 35 0 chr12 8764932 8765218 -135517271 - AluJb SINE Alu -16 296 1 6839 174 40 48 chr12 8765218 8766035 -135516454 - L1 LINE L1 -1621 4525 3721 2309 119 3 0 chr12 8766056 8766367 -135516122 - AluSx SINE Alu 0 312 1 1022 97 0 8 chr12 8766371 8766505 -135515984 - AluSq/x SINE Alu -180 133 1 2127 126 7 0 chr12 8767517 8767810 -135514679 + AluSx SINE Alu 4 298 -14 186 234 43 0 chr12 8767877 8767924 -135514565 - L3 LINE CR1 -4 1573 1525 21 0 0 0 chr12 8768070 8768091 -135514398 + AT_rich Low_complexity Low_complexity 1 21 0 5667 83 11 48 chr12 8768091 8768992 -135513497 + SVA Other Other 1 868 -518 1240 106 43 67 chr12 8769050 8769495 -135512994 + SVA Other Other 433 866 -520 6528 70 20 37 chr12 8769559 8770530 -135511959 + SVA Other Other 433 1386 0 222 62 0 0 chr12 8770575 8770607 -135511882 + (A)n Simple_repeat Simple_repeat 1 32 0 677 279 48 14 chr12 8770668 8770958 -135511531 - AluJb SINE Alu -2 300 1 3320 86 2 29 chr12 8771181 8771209 -135511280 - THE1A-int LTR MaLR -1136 444 417 2254 86 0 7 chr12 8771209 8771518 -135510971 + AluSg1 SINE Alu 1 307 0 3320 86 2 29 chr12 8771518 8771944 -135510545 - THE1A-int LTR MaLR -1163 417 1 2588 83 23 9 chr12 8771944 8772294 -135510195 - THE1A LTR MaLR 0 355 1 1207 197 68 4 chr12 8772294 8772496 -135509993 + MSTB LTR MaLR 162 384 -42 1977 117 0 4 chr12 8772496 8772760 -135509729 - AluSq SINE Alu -50 263 1 1207 197 68 4 chr12 8772760 8772806 -135509683 + MSTB LTR MaLR 384 426 0 515 272 142 54 chr12 8772940 8773176 -135509313 - MLT1H1 LTR MaLR -16 533 319 2301 107 0 3 chr12 8773176 8773475 -135509014 - AluSx SINE Alu -14 298 1 515 272 142 54 chr12 8773475 8773689 -135508800 - MLT1H1 LTR MaLR -230 319 1 2557 64 0 3 chr12 8773805 8774117 -135508372 - AluY SINE Alu 0 311 1 1999 145 0 29 chr12 8774118 8774428 -135508061 - AluSx SINE Alu -11 301 1 2319 100 10 0 chr12 8774439 8774739 -135507750 - AluSx SINE Alu -9 303 1 254 315 87 17 chr12 8774765 8775111 -135507378 + L2 LINE L2 1893 2262 -1052 1244 207 104 85 chr12 8775113 8775659 -135506830 - LTR24B LTR ERV1 -5 630 28 1533 200 3 14 chr12 8775659 8775954 -135506535 - AluJb SINE Alu -20 292 1 2369 115 0 0 chr12 8775968 8776280 -135506209 - AluSx SINE Alu 0 312 1 22 0 0 0 chr12 8776287 8776309 -135506180 + AT_rich Low_complexity Low_complexity 1 22 0 334 323 98 19 chr12 8776960 8777276 -135505213 + L2 LINE L2 2473 2813 -501 1731 174 45 0 chr12 8777330 8777500 -135504989 - AluJb SINE Alu -8 304 114 283 0 47 23 chr12 8777500 8777543 -135504946 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1731 174 45 0 chr12 8777543 8777659 -135504830 - AluJb SINE Alu -198 114 5 839 131 0 51 chr12 8777760 8777897 -135504592 - FLAM_C SINE Alu -3 130 1 2415 82 10 0 chr12 8777901 8778207 -135504282 - AluSp SINE Alu -2 311 3 2156 107 3 35 chr12 8778753 8779072 -135503417 - AluSx SINE Alu -3 309 1 4072 97 2 23 chr12 8779401 8779746 -135502743 + MER41A LTR ERV1 1 331 -223 2393 48 7 14 chr12 8779746 8780040 -135502449 - AluY SINE Alu -19 292 1 4072 97 2 23 chr12 8780040 8780260 -135502229 + MER41A LTR ERV1 331 554 0 1480 146 124 51 chr12 8780570 8780845 -135501644 - AluJb SINE Alu -16 296 2 1707 249 116 57 chr12 8780930 8781697 -135500792 + MER21B LTR ERV1 1 812 -51 2249 86 0 10 chr12 8782072 8782385 -135500104 + AluY SINE Alu 1 310 -1 838 87 17 0 chr12 8782403 8782518 -135499971 - AluSp SINE Alu -196 117 1 3116 114 7 4 chr12 8782519 8782982 -135499507 - L1MC1 LINE L1 -355 5978 5515 227 250 16 0 chr12 8782982 8783046 -135499443 + MLT1J2 LTR MaLR 73 137 -313 1125 188 59 86 chr12 8783046 8783329 -135499160 - L1MC/D LINE L1 -743 5403 5114 2181 121 0 0 chr12 8783329 8783626 -135498863 - AluSq SINE Alu -12 301 5 1125 188 59 86 chr12 8783626 8783756 -135498733 - L1MC/D LINE L1 -1032 5114 5078 2103 124 3 0 chr12 8783756 8784055 -135498434 - AluSx SINE Alu -12 300 1 1125 188 59 86 chr12 8784055 8784216 -135498273 - L1MC/D LINE L1 -1068 5078 4914 1850 152 21 7 chr12 8784216 8784505 -135497984 - AluSx SINE Alu -19 293 1 2026 202 70 98 chr12 8784526 8785193 -135497296 - L1MC/D LINE L1 -1793 4353 3705 229 175 0 0 chr12 8785192 8785232 -135497257 - L1MC/D LINE L1 -2813 3333 3294 * 1854 110 23 58 chr12 8785232 8785392 -135497097 - AluSx SINE Alu -11 301 156 2322 78 0 3 chr12 8785392 8785686 -135496803 - AluSc SINE Alu -14 295 3 1854 110 23 58 chr12 8785686 8785833 -135496656 - AluSx SINE Alu -156 156 5 240 111 0 0 chr12 8785837 8785873 -135496616 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 709 190 123 0 chr12 8785874 8786037 -135496452 - AluSg/x SINE Alu -9 303 121 2486 53 0 31 chr12 8786043 8786364 -135496125 - AluY SINE Alu 0 311 1 232 355 65 13 chr12 8786475 8786630 -135495859 - MER5A DNA MER1_type 0 189 27 188 250 23 0 chr12 8786660 8786704 -135495785 - MER5A DNA MER1_type 0 189 145 362 121 95 78 chr12 8786706 8786822 -135495667 - MER53 DNA DNA -1 188 71 200 368 0 0 chr12 8787068 8787155 -135495334 + T-rich Low_complexity Low_complexity 3 89 0 272 237 17 0 chr12 8787200 8787259 -135495230 + CT-rich Low_complexity Low_complexity 2 61 0 195 42 0 0 chr12 8787400 8787424 -135495065 + (A)n Simple_repeat Simple_repeat 1 24 0 2307 107 0 3 chr12 8788409 8788718 -135493771 - AluSx SINE Alu -4 308 1 21 71 0 0 chr12 8789033 8789075 -135493414 + AT_rich Low_complexity Low_complexity 1 42 0 640 227 47 41 chr12 8790077 8790225 -135492264 + MIR SINE MIR 1 152 -110 2260 121 0 0 chr12 8790225 8790531 -135491958 + AluSc SINE Alu 1 306 -3 640 227 47 41 chr12 8790531 8790554 -135491935 + MIR SINE MIR 152 173 -89 868 170 22 0 chr12 8790757 8790892 -135491597 - AluJo SINE Alu -61 251 114 1976 137 19 3 chr12 8790909 8791216 -135491273 + AluSx SINE Alu 1 312 0 205 296 35 17 chr12 8791762 8791877 -135490612 + MIR SINE MIR 102 218 -44 199 241 0 37 chr12 8792034 8792088 -135490401 - MER5A DNA MER1_type -95 94 43 197 245 0 20 chr12 8792046 8792095 -135490394 + MER5A DNA MER1_type 118 165 -24 * 2213 131 0 3 chr12 8792967 8793280 -135489209 - AluSx SINE Alu 0 312 1 336 244 100 11 chr12 8793476 8793566 -135488923 - MER5B DNA MER1_type -3 175 78 2190 94 40 7 chr12 8793615 8793914 -135488575 + AluSx SINE Alu 1 309 -3 683 184 0 0 chr12 8793914 8794028 -135488461 - AluJo/FLAM SINE Alu -184 118 5 2165 114 10 0 chr12 8794042 8794348 -135488141 - AluSq SINE Alu -4 309 1 480 239 168 19 chr12 8794586 8794795 -135487694 - MIR SINE MIR 0 262 23 248 49 49 0 chr12 8794833 8794874 -135487615 + (CCCCG)n Simple_repeat Simple_repeat 3 45 0 2389 81 13 0 chr12 8795349 8795647 -135486842 - AluSp SINE Alu -11 302 1 678 236 65 10 chr12 8796139 8796338 -135486151 - MIR SINE MIR -21 241 32 215 216 136 56 chr12 8796737 8796862 -135485627 - MIR SINE MIR -67 195 61 42 48 0 0 chr12 8797485 8797548 -135484941 + GC_rich Low_complexity Low_complexity 1 63 0 2095 140 7 0 chr12 8800434 8800734 -135481755 + AluSx SINE Alu 1 302 -10 2187 123 0 3 chr12 8801373 8801673 -135480816 + AluSx SINE Alu 1 299 -13 2240 126 7 0 chr12 8802655 8802965 -135479524 + AluSx SINE Alu 1 312 0 1349 184 43 35 chr12 8802989 8803244 -135479245 - AluJo SINE Alu -24 288 32 828 184 0 0 chr12 8803246 8803371 -135479118 - AluJo/FLAM SINE Alu -187 125 1 358 279 103 12 chr12 8803372 8803537 -135478952 + MIR SINE MIR 67 246 -16 2122 132 7 3 chr12 8803753 8804048 -135478441 + AluSx SINE Alu 1 296 -16 1235 189 70 12 chr12 8804363 8804622 -135477867 + AluJo SINE Alu 13 286 -26 261 0 0 0 chr12 8804622 8804651 -135477838 + (CA)n Simple_repeat Simple_repeat 2 30 0 2438 101 0 0 chr12 8804845 8805151 -135477338 + AluSx SINE Alu 1 306 -6 1854 186 51 70 chr12 8805266 8805739 -135476750 - MLT2C2 LTR ERVL 0 464 1 2244 113 0 16 chr12 8805783 8806093 -135476396 - AluSq SINE Alu -6 307 3 2121 133 0 10 chr12 8806095 8806404 -135476085 - AluSq SINE Alu -7 306 1 3556 199 127 13 chr12 8806698 8807473 -135475016 - MER21B LTR ERV1 0 863 1 1464 107 207 15 chr12 8809328 8809599 -135472890 + MER44D DNA MER2_type 17 609 0 1424 171 8 28 chr12 8809637 8809909 -135472580 - AluSx SINE Alu 0 301 35 2180 128 13 0 chr12 8809929 8810255 -135472234 - AluSx SINE Alu 0 330 1 860 160 0 14 chr12 8810495 8810639 -135471850 + FLAM_C SINE Alu 1 142 -1 1438 125 0 37 chr12 8810683 8810899 -135471590 + AluSg/x SINE Alu 89 296 -14 807 167 28 21 chr12 8810916 8811060 -135471429 + FRAM SINE Alu 18 162 -14 1284 20 33 0 chr12 8811173 8811325 -135471164 - L1PA3 LINE L1 0 6155 5999 572 101 0 71 chr12 8811820 8811919 -135470570 - AluSp/q SINE Alu -16 297 206 940 161 77 0 chr12 8811922 8812090 -135470399 + AluSp SINE Alu 131 311 -2 555 204 80 0 chr12 8813933 8814046 -135468443 + FLAM_A SINE Alu 13 134 -8 2044 116 24 3 chr12 8814875 8815169 -135467320 - AluSx SINE Alu -8 304 5 207 0 0 0 chr12 8816081 8816104 -135466385 + (T)n Simple_repeat Simple_repeat 1 23 0 917 115 0 0 chr12 8816375 8816505 -135465984 - FRAM SINE Alu -1 175 46 228 67 0 0 chr12 8816701 8816731 -135465758 + (T)n Simple_repeat Simple_repeat 1 30 0 217 208 208 0 chr12 8816732 8816804 -135465685 - MIR SINE MIR -53 209 123 539 174 114 0 chr12 8816843 8816975 -135465514 + L1MB7 LINE L1 6038 6184 0 2116 108 4 0 chr12 8818013 8818291 -135464198 + AluSc SINE Alu 1 279 -30 369 0 0 0 chr12 8818319 8818360 -135464129 + (TG)n Simple_repeat Simple_repeat 2 42 0 2690 188 19 61 chr12 8818367 8819005 -135463484 - L1MC1 LINE L1 -18 6315 5705 2287 92 0 0 chr12 8819010 8819318 -135463171 - AluSq SINE Alu 0 308 1 237 244 165 35 chr12 8820019 8820134 -135462355 - L2 LINE L2 -10 3303 3174 2161 86 11 0 chr12 8820209 8820489 -135462000 - AluSq SINE Alu -30 283 1 569 167 11 0 chr12 8820769 8820859 -135461630 - Tigger1 DNA MER2_type -1 2417 2327 * 12167 130 51 33 chr12 8820856 8821388 -135461101 - Tigger1 DNA MER2_type -276 2142 1621 2403 98 0 0 chr12 8821388 8821693 -135460796 - AluSx SINE Alu -7 305 1 12167 130 51 33 chr12 8821693 8823264 -135459225 - Tigger1 DNA MER2_type -797 1621 1 884 244 166 57 chr12 8823289 8823454 -135459035 - L1M3d LINE L1 -4516 2511 2365 1414 175 94 21 chr12 8823454 8823632 -135458857 - AluJb SINE Alu -5 307 99 270 0 0 0 chr12 8823632 8823662 -135458827 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1414 175 94 21 chr12 8823662 8823769 -135458720 - AluJb SINE Alu -213 99 1 884 244 166 57 chr12 8823769 8824217 -135458272 - L1M3d LINE L1 -4662 2365 1831 1503 254 141 21 chr12 8824255 8824766 -135457723 - L1M3d LINE L1 -6458 572 1 1600 133 17 0 chr12 8824920 8825160 -135457329 - AluSx SINE Alu -5 307 64 2130 166 39 52 chr12 8825335 8825505 -135456984 - L1MC1 LINE L1 -620 5713 5542 2150 134 0 0 chr12 8825505 8825797 -135456692 - AluSx SINE Alu -20 292 1 2130 166 39 52 chr12 8825797 8826148 -135456341 - L1MC1 LINE L1 -791 5542 5200 30 45 0 0 chr12 8826236 8826280 -135456209 + AT_rich Low_complexity Low_complexity 1 44 0 1719 167 128 8 chr12 8826313 8826770 -135455719 - L1MCa LINE L1 -3952 2474 2063 222 91 0 0 chr12 8826870 8826903 -135455586 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1935 129 21 14 chr12 8826906 8827186 -135455303 - AluSx SINE Alu -30 282 1 233 200 0 173 chr12 8827188 8827263 -135455226 - MER2 DNA MER2_type -1 344 283 1947 131 31 10 chr12 8827274 8827565 -135454924 + AluSx SINE Alu 1 297 -15 442 205 63 71 chr12 8827619 8827746 -135454743 - MER8 DNA MER2_type -89 150 25 1472 95 11 0 chr12 8877776 8877966 -135404523 - AluSp SINE Alu -121 192 1 2168 225 176 21 chr12 8878248 8878455 -135404034 - L1MD2 LINE L1 0 8042 7868 1469 157 142 19 chr12 8878455 8878723 -135403766 - AluJb SINE Alu -1 301 1 2168 225 176 21 chr12 8878723 8878756 -135403733 - L1MD2 LINE L1 -174 7868 7841 2242 99 0 3 chr12 8878756 8879050 -135403439 - AluSq SINE Alu -20 293 1 2168 225 176 21 chr12 8879050 8879643 -135402846 - L1MD2 LINE L1 -201 7841 7341 2223 114 7 0 chr12 8879643 8879951 -135402538 - AluSp SINE Alu -3 310 1 2168 225 176 21 chr12 8879951 8880059 -135402430 - L1MD2 LINE L1 -701 7341 6241 972 221 9 14 chr12 8880059 8880276 -135402213 - AluJo SINE Alu -91 221 6 1107 186 66 121 chr12 8881032 8881293 -135401196 - MLT1A2 LTR MaLR -2 372 98 851 165 0 0 chr12 8881293 8881420 -135401069 - FLAM_C SINE Alu -6 127 1 1412 196 46 14 chr12 8881425 8881710 -135400779 - AluJb SINE Alu -18 294 1 1107 186 66 121 chr12 8881710 8881823 -135400666 - MLT1A2 LTR MaLR -280 94 13 1855 166 10 3 chr12 8881847 8882143 -135400346 - AluSx SINE Alu -14 298 1 2255 92 14 0 chr12 8882287 8882582 -135399907 - L1PB2 LINE L1 -1 6150 5852 1963 152 0 14 chr12 8882728 8882864 -135399625 + AluSx SINE Alu 1 137 -175 2110 106 10 20 chr12 8882864 8883166 -135399323 + AluSg SINE Alu 1 299 -11 1963 152 0 14 chr12 8883166 8883326 -135399163 + AluSx SINE Alu 137 293 -19 955 104 6 104 chr12 8883398 8883436 -135399053 + L1PA16 LINE L1 6002 6042 -124 2143 73 4 4 chr12 8883436 8883709 -135398780 + AluY SINE Alu 1 273 -38 955 104 6 104 chr12 8883709 8883843 -135398646 + L1PA16 LINE L1 6042 6157 -9 1906 98 91 0 chr12 8883861 8884135 -135398354 - AluSg SINE Alu -11 299 1 2291 105 0 3 chr12 8885011 8885315 -135397174 + AluSx SINE Alu 3 305 -7 24 32 0 0 chr12 8886548 8886579 -135395910 + AT_rich Low_complexity Low_complexity 1 31 0 1727 137 19 72 chr12 8886590 8886783 -135395706 - AluSx SINE Alu -8 304 133 2182 80 4 0 chr12 8886783 8887059 -135395430 - L1PA6 LINE L1 0 6154 5878 1727 137 19 72 chr12 8887059 8887186 -135395303 - AluSx SINE Alu -179 133 1 2176 116 3 0 chr12 8887339 8887631 -135394858 - AluSp SINE Alu -20 293 1 2096 136 0 0 chr12 8887631 8887932 -135394557 - AluSx SINE Alu -11 301 1 2240 90 10 7 chr12 8888259 8888560 -135393929 + AluSx SINE Alu 5 306 -6 1377 179 86 14 chr12 8888698 8888977 -135393512 - AluJo SINE Alu -13 299 1 293 264 147 56 chr12 8889378 8889575 -135392914 + L2 LINE L2 3095 3309 -4 2312 102 7 0 chr12 8889697 8889991 -135392498 - AluSx SINE Alu -16 296 1 1403 178 102 29 chr12 8890142 8890456 -135392033 + MER44D DNA MER2_type 2 608 -1 351 0 0 0 chr12 8890457 8890496 -135391993 + (TG)n Simple_repeat Simple_repeat 1 39 0 241 172 47 0 chr12 8890497 8890561 -135391928 + (TA)n Simple_repeat Simple_repeat 1 67 0 1900 133 25 7 chr12 8890601 8890886 -135391603 + AluSg SINE Alu 1 290 -20 22 0 0 0 chr12 8890966 8890988 -135391501 + AT_rich Low_complexity Low_complexity 1 22 0 2032 111 24 0 chr12 8891159 8891447 -135391042 - AluSc SINE Alu -14 295 1 273 248 17 43 chr12 8891514 8891631 -135390858 - L1ME LINE L1 -244 6271 6158 1060 224 23 14 chr12 8892205 8892424 -135390065 - MER58A DNA MER1_type -3 221 1 258 195 115 0 chr12 8892537 8892624 -135389865 - MER5C DNA MER1_type 0 324 228 370 286 50 8 chr12 8892636 8892755 -135389734 - MER5C DNA MER1_type -200 124 1 1983 112 4 0 chr12 8894229 8894496 -135387993 + AluSx SINE Alu 20 287 -25 276 260 13 0 chr12 8894564 8894641 -135387848 + L1M4 LINE L1 5004 5081 -1065 195 42 0 0 chr12 8894654 8894678 -135387811 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2311 92 0 16 chr12 8894680 8894985 -135387504 - AluSq SINE Alu -13 300 1 664 324 121 4 chr12 8895034 8895290 -135387199 - MLT1H1 LTR MaLR -214 341 56 300 175 0 0 chr12 8895360 8895417 -135387072 + L1 LINE L1 4777 4833 -1313 1521 274 96 54 chr12 8896436 8896711 -135385778 + L2 LINE L2 2100 2362 -952 201 74 0 0 chr12 8896711 8896738 -135385751 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1521 274 96 54 chr12 8896738 8896750 -135385739 + L2 LINE L2 2362 2372 -942 1598 149 7 76 chr12 8896750 8896899 -135385590 - AluJb SINE Alu -32 280 161 2063 134 7 0 chr12 8896899 8897189 -135385300 - AluSx SINE Alu -19 293 2 1598 149 7 76 chr12 8897189 8897340 -135385149 - AluJb SINE Alu -151 161 1 1521 274 96 54 chr12 8897340 8897666 -135384823 + L2 LINE L2 2372 2750 -564 1464 157 71 48 chr12 8897666 8897811 -135384678 + AluJb SINE Alu 1 141 -171 1889 160 7 7 chr12 8897811 8898111 -135384378 + AluSx SINE Alu 1 300 -12 1464 157 71 48 chr12 8898111 8898259 -135384230 + AluJb SINE Alu 141 301 -11 1521 274 96 54 chr12 8898259 8898350 -135384139 + L2 LINE L2 2750 2836 -478 420 227 31 16 chr12 8898355 8898483 -135384006 + L1ME3A LINE L1 5839 5968 -202 1968 131 34 7 chr12 8898624 8898921 -135383568 - AluSx SINE Alu -7 305 1 1084 172 252 48 chr12 8899177 8899427 -135383062 + AluJo SINE Alu 1 301 -1 286 263 70 72 chr12 8899697 8899899 -135382590 - L1ME LINE L1 -527 6037 5835 896 111 0 15 chr12 8899899 8900034 -135382455 - FLAM_C SINE Alu 0 133 1 286 263 70 72 chr12 8900034 8900204 -135382285 - L1ME LINE L1 -729 5835 5666 769 214 0 0 chr12 8900231 8900357 -135382132 - FLAM_C SINE Alu -16 127 2 387 299 101 37 chr12 8900361 8900816 -135381673 - L1ME LINE L1 -872 5668 5185 2054 120 11 0 chr12 8901053 8901336 -135381153 + AluSx SINE Alu 1 286 -26 282 258 26 17 chr12 8901394 8901570 -135380919 - L1ME LINE L1 -689 5473 5297 265 220 202 18 chr12 8901573 8901682 -135380807 - MER20B DNA MER1_type -654 129 1 7806 40 17 0 chr12 8901883 8902865 -135379624 - L1PA5 LINE L1 0 6154 5168 1057 185 32 5 chr12 8903005 8903194 -135379295 + AluJb SINE Alu 1 194 -118 2238 103 0 15 chr12 8903351 8903680 -135378809 - LTR17 LTR ERV1 -456 324 1 2502 49 0 6 chr12 8903680 8903987 -135378502 - HERV17 LTR ERV1 0 8626 6834 302 77 0 0 chr12 8903963 8904002 -135378487 - HERV17 LTR ERV1 -1078 7548 7510 * 1158 82 32 0 chr12 8903998 8904156 -135378333 - HERV17 LTR ERV1 -1479 7147 6985 * 41666 53 15 3 chr12 8904147 8909900 -135372589 - HERV17 LTR ERV1 -2724 5902 1 3684 89 42 4 chr12 8909900 8910406 -135372083 - LTR17 LTR ERV1 0 780 256 351 323 94 45 chr12 8910408 8911097 -135371392 - L1ME LINE L1 -2409 4131 3280 22 35 0 0 chr12 8911210 8911239 -135371250 + AT_rich Low_complexity Low_complexity 1 29 0 322 237 75 16 chr12 8911337 8911525 -135370964 - L1MDa LINE L1 -3890 2650 2453 324 255 7 128 chr12 8911845 8911908 -135370581 - L2 LINE L2 0 3313 3275 2059 120 34 0 chr12 8911908 8912199 -135370290 - AluSq SINE Alu -12 301 1 324 255 7 128 chr12 8912199 8912276 -135370213 - L2 LINE L2 -38 3275 3190 3786 157 55 70 chr12 8912576 8913444 -135369045 - MER21A LTR ERV1 -3 860 1 2191 125 13 0 chr12 8913816 8914121 -135368368 - AluSx SINE Alu -3 309 1 21 0 0 0 chr12 8914911 8914932 -135367557 + AT_rich Low_complexity Low_complexity 1 21 0 261 83 0 0 chr12 8919148 8919184 -135363305 + (T)n Simple_repeat Simple_repeat 1 36 0 2123 121 0 3 chr12 8922996 8923293 -135359196 + AluSq SINE Alu 1 296 -17 853 158 107 23 chr12 8925297 8925474 -135357015 - Tigger3(Golem) DNA MER2_type -33 2996 2805 1951 109 31 3 chr12 8925488 8925782 -135356707 + AluSx SINE Alu 1 302 -10 1195 111 34 58 chr12 8925789 8925997 -135356492 + AluSx SINE Alu 2 204 -108 1648 147 43 0 chr12 8926004 8926283 -135356206 + AluJb SINE Alu 1 291 -21 384 283 123 37 chr12 8926333 8926731 -135355758 - LTR16B LTR ERVL -1 463 12 532 338 37 37 chr12 8926819 8927147 -135355342 - HERVL LTR ERVL -2464 3190 2863 2239 68 0 4 chr12 8927212 8927493 -135354996 + AluSg SINE Alu 21 300 -10 363 315 168 0 chr12 8927499 8927642 -135354847 - HERVL LTR ERVL -2146 2850 2684 1629 161 161 13 chr12 8927643 8928015 -135354474 - MSTA LTR MaLR -1 427 1 5459 184 45 9 chr12 8928015 8929012 -135353477 - MSTA-int LTR MaLR 0 1651 619 38093 92 36 21 chr12 8929012 8935574 -135346915 + HERV9 LTR ERV1 17 4944 0 559 175 73 32 chr12 8935574 8935778 -135346711 + HERV9 LTR ERV1 728 1138 -5758 330 180 0 0 chr12 8935780 8935841 -135346648 + HERV9 LTR ERV1 7504 7564 -835 * 7736 100 69 87 chr12 8935837 8938027 -135344462 + pTR5 LTR ERV1 504 2438 0 2232 76 0 0 chr12 8938044 8938334 -135344155 - AluY SINE Alu -21 290 1 789 206 6 6 chr12 8938337 8938497 -135343992 - MSTA-int LTR MaLR -1040 611 452 * 1513 135 37 0 chr12 8938486 8938731 -135343758 - MSTA-int LTR MaLR -1397 254 1 2200 132 116 0 chr12 8938731 8939103 -135343386 - MSTA LTR MaLR -13 415 1 1715 130 0 88 chr12 8939364 8939510 -135342979 + AluSx SINE Alu 1 108 -204 2175 122 0 0 chr12 8939510 8939822 -135342667 + AluSx SINE Alu 1 312 0 1715 130 0 88 chr12 8939822 8939982 -135342507 + AluSx SINE Alu 108 280 -32 252 111 0 0 chr12 8940046 8940091 -135342398 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 3179 135 86 2 chr12 8940149 8940621 -135341868 - L1MB1 LINE L1 -1 6167 5637 228 86 0 0 chr12 8940621 8940656 -135341833 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3179 135 86 2 chr12 8940656 8940755 -135341734 - L1MB1 LINE L1 -531 5637 5548 321 333 82 6 chr12 8940937 8941108 -135341381 - L1ME4a LINE L1 -169 5952 5769 1783 152 3 21 chr12 8941179 8941469 -135341020 - AluJo SINE Alu -24 288 4 540 245 0 0 chr12 8941543 8941641 -135340848 + FLAM_A SINE Alu 3 100 -42 7462 46 3 0 chr12 8941641 8943253 -135339236 + L1PA5 LINE L1 4555 6154 0 3058 55 0 0 chr12 8943253 8943655 -135338834 + L1PA6 LINE L1 5770 6176 0 21 36 0 0 chr12 8944067 8944095 -135338394 + AT_rich Low_complexity Low_complexity 1 28 0 2200 84 14 3 chr12 8944106 8944402 -135338087 + AluSq SINE Alu 1 299 -14 3022 143 51 8 chr12 8944877 8945367 -135337122 - MER9 LTR ERVK 0 511 1 2194 70 0 20 chr12 8945736 8946038 -135336451 + AluY SINE Alu 1 296 -15 333 102 45 23 chr12 8946660 8946748 -135335741 + (TA)n Simple_repeat Simple_repeat 1 90 0 2823 74 112 0 chr12 8946753 8947156 -135335333 + LTR7 LTR ERV1 1 448 -2 19743 103 16 33 chr12 8947158 8950199 -135332290 + HERVH LTR ERV1 1 2987 -4726 917 135 20 0 chr12 8950193 8950341 -135332148 + HERVH LTR ERV1 3140 3290 -4423 * 3617 89 4 6 chr12 8950331 8950834 -135331655 + HERVH LTR ERV1 3492 3993 -3720 2955 151 0 2 chr12 8950836 8951454 -135331035 + HERVH LTR ERV1 4488 5149 -2564 1414 130 19 0 chr12 8951455 8951671 -135330818 + HERVH LTR ERV1 5600 5819 -1894 2299 99 59 13 chr12 8951671 8952044 -135330445 + HERVH LTR ERV1 7324 7713 0 2897 71 101 0 chr12 8952044 8952451 -135330038 + LTR7 LTR ERV1 1 448 -2 1710 93 4 4 chr12 8952600 8952837 -135329652 - AluSg SINE Alu -15 295 59 1722 115 4 4 chr12 8952837 8953079 -135329410 + AluSp SINE Alu 10 252 -61 1009 112 0 0 chr12 8953079 8953222 -135329267 + AluSg/x SINE Alu 167 309 -3 262 200 0 0 chr12 8953353 8953398 -135329091 - L2 LINE L2 -7 3306 3262 2101 62 31 14 chr12 8953461 8953750 -135328739 + AluY SINE Alu 1 294 -17 350 103 103 12 chr12 8954390 8954555 -135327934 + (TA)n Simple_repeat Simple_repeat 1 180 0 206 138 17 69 chr12 8954563 8954621 -135327868 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 310 159 91 57 chr12 8954627 8954715 -135327774 - L1MC4 LINE L1 -1340 6702 6612 327 112 96 0 chr12 8954718 8954843 -135327646 + (TA)n Simple_repeat Simple_repeat 1 137 0 2283 77 8 2 chr12 8954848 8955205 -135327284 + LTR7 LTR ERV1 1 448 -2 213 132 0 26 chr12 8955212 8955250 -135327239 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 2211 80 7 7 chr12 8955257 8955556 -135326933 - AluSp SINE Alu -14 299 1 23 0 0 0 chr12 8955558 8955581 -135326908 + AT_rich Low_complexity Low_complexity 1 23 0 461 90 104 0 chr12 8955617 8955684 -135326805 - MLT2D LTR ERVL -51 363 290 * 585 151 0 11 chr12 8955683 8955776 -135326713 - MLT1C LTR MaLR -375 92 1 26 0 0 0 chr12 8956632 8956658 -135325831 + AT_rich Low_complexity Low_complexity 1 26 0 2134 95 3 13 chr12 8956658 8956964 -135325525 + AluSq SINE Alu 1 303 -10 279 0 0 0 chr12 8956965 8956996 -135325493 + (TA)n Simple_repeat Simple_repeat 2 32 0 278 125 0 0 chr12 8957532 8957572 -135324917 + Alu SINE Alu 8 47 -256 1437 106 0 0 chr12 8957572 8957770 -135324719 + AluSg/x SINE Alu 96 293 -17 431 249 11 126 chr12 8957962 8958312 -135324177 - L1MCa LINE L1 -5057 1884 1575 1590 200 0 16 chr12 8958314 8958629 -135323860 - AluJb SINE Alu -2 310 1 2137 251 54 62 chr12 8958700 8959545 -135322944 - L1MCa LINE L1 -4892 1531 693 1178 273 65 58 chr12 8959588 8960036 -135322453 - L1MCa LINE L1 -5824 599 156 219 36 0 0 chr12 8960036 8960064 -135322425 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 2117 93 0 7 chr12 8960064 8960344 -135322145 - AluSg SINE Alu -32 278 1 1178 273 65 58 chr12 8960344 8960432 -135322057 - L1MCa LINE L1 -6266 157 58 1612 160 31 20 chr12 8960447 8960740 -135321749 - AluJo SINE Alu -11 301 6 1917 118 59 0 chr12 8960818 8961106 -135321383 - AluSq SINE Alu -3 310 6 264 268 49 0 chr12 8961153 8961235 -135321254 - L1ME LINE L1 -292 5829 5744 361 266 104 86 chr12 8961313 8961640 -135320849 + MLT1K LTR MaLR 84 416 -172 1646 146 10 30 chr12 8961831 8962023 -135320466 - AluJo SINE Alu -11 301 116 3267 149 29 91 chr12 8962023 8962294 -135320195 + LTR8 LTR ERV1 1 287 -404 2533 40 0 0 chr12 8962294 8962594 -135319895 + AluY SINE Alu 1 300 -11 3267 149 29 91 chr12 8962594 8963059 -135319430 + LTR8 LTR ERV1 287 691 0 1646 146 10 30 chr12 8963059 8963167 -135319322 - AluJo SINE Alu -196 116 7 1898 149 16 7 chr12 8963225 8963534 -135318955 + AluJb SINE Alu 1 312 0 348 312 37 17 chr12 8963568 8963773 -135318716 - L1ME LINE L1 -459 5662 5480 2080 106 0 26 chr12 8963773 8964075 -135318414 - AluSg SINE Alu -16 294 1 278 253 0 38 chr12 8964909 8964988 -135317501 + L2 LINE L2 3192 3267 -46 243 0 0 0 chr12 8966087 8966114 -135316375 + (T)n Simple_repeat Simple_repeat 1 27 0 29 0 0 0 chr12 8966195 8966224 -135316265 + AT_rich Low_complexity Low_complexity 1 29 0 5608 131 9 37 chr12 8966242 8968313 -135314176 - L1MA3 LINE L1 -27 7692 5740 1078 131 0 27 chr12 8968314 8968479 -135314010 - AluSg/x SINE Alu -16 294 133 1848 143 13 0 chr12 8968479 8968780 -135313709 - AluSx SINE Alu -4 308 4 1078 131 0 27 chr12 8968780 8968797 -135313692 - AluSg/x SINE Alu -177 133 117 1059 115 12 107 chr12 8968809 8968923 -135313566 - L1MA3 LINE L1 -4845 2720 2640 1845 125 14 0 chr12 8968923 8969204 -135313285 + AluSx SINE Alu 1 285 -27 1059 115 12 107 chr12 8969204 8969333 -135313156 - L1MA3 LINE L1 -4925 2640 2500 * 9415 146 52 3 chr12 8969316 8971109 -135311380 - L1MA3 LINE L1 -5270 2295 16 1900 128 30 3 chr12 8971245 8971541 -135310948 + AluJb SINE Alu 1 304 -8 2073 140 0 0 chr12 8971908 8972216 -135310273 - AluSx SINE Alu -4 308 1 1479 152 35 58 chr12 8972806 8973116 -135309373 - AluJb SINE Alu -9 303 1 3298 159 19 90 chr12 8973435 8973601 -135308888 - LTR8 LTR ERV1 0 691 515 2495 64 0 0 chr12 8973601 8973914 -135308575 - AluSp SINE Alu 0 313 1 3298 159 19 90 chr12 8973914 8974491 -135307998 - LTR8 LTR ERV1 -176 515 1 947 109 65 0 chr12 8974492 8974630 -135307859 - HUERS-P1 LTR ERV1 -1 6262 6116 417 145 48 0 chr12 8974630 8974713 -135307776 - LTR8A LTR ERV1 -640 87 1 1985 138 3 0 chr12 8974839 8975137 -135307352 - AluSx SINE Alu -13 299 1 1921 118 33 10 chr12 8975255 8975560 -135306929 - AluSx SINE Alu 0 312 1 2416 66 0 0 chr12 8977596 8977899 -135304590 + AluY SINE Alu 1 303 -8 2214 96 3 0 chr12 8978346 8978647 -135303842 - AluSq SINE Alu -11 302 1 1835 135 14 3 chr12 8978890 8979178 -135303311 - AluSx SINE Alu -15 297 7 2007 99 3 42 chr12 8979464 8979777 -135302712 + AluSg SINE Alu 1 301 -9 2495 51 0 10 chr12 8980495 8980808 -135301681 + AluY SINE Alu 1 310 -1 659 291 62 9 chr12 8981177 8981387 -135301102 - MIR SINE MIR -40 222 2 2070 101 10 7 chr12 8981589 8981911 -135300578 - AluSp SINE Alu 0 313 1 442 141 14 0 chr12 8981943 8982014 -135300475 + AluS SINE Alu 2 73 -240 491 216 85 80 chr12 8982413 8982502 -135299987 - MER69A DNA AcHobo -2349 177 90 2085 108 3 0 chr12 8982502 8982790 -135299699 + AluSg SINE Alu 1 289 -21 972 82 0 0 chr12 8982790 8982925 -135299564 + (GGAA)n Simple_repeat Simple_repeat 3 137 0 491 216 85 80 chr12 8982925 8983010 -135299479 - MER69A DNA AcHobo -2435 91 1 299 135 19 0 chr12 8983120 8983172 -135299317 + MADE1 DNA Mariner 28 80 0 319 293 138 27 chr12 8983884 8984072 -135298417 - MLT1H LTR MaLR -146 403 195 2532 33 0 7 chr12 8984088 8984393 -135298096 - AluY SINE Alu -8 303 1 1036 163 27 0 chr12 8985361 8985582 -135296907 - MER33 DNA MER1_type -58 266 40 2374 75 0 7 chr12 8985586 8985894 -135296595 - AluY SINE Alu -5 306 1 198 0 0 0 chr12 8986064 8986086 -135296403 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 24 0 0 0 chr12 8986136 8986160 -135296329 + AT_rich Low_complexity Low_complexity 1 24 0 865 95 0 0 chr12 8986160 8986276 -135296213 - AluSq/x SINE Alu -196 116 1 2260 49 0 11 chr12 8987440 8987768 -135294721 + AluY SINE Alu 1 325 0 1026 162 21 85 chr12 8988302 8988443 -135294046 + AluJo SINE Alu 6 128 -184 1733 124 35 0 chr12 8988443 8988702 -135293787 + AluSx SINE Alu 32 299 -13 1026 162 21 85 chr12 8988702 8988795 -135293694 + AluJo SINE Alu 128 225 -87 701 266 14 56 chr12 8988811 8989097 -135293392 - AluSp SINE Alu -16 297 24 28 0 0 0 chr12 8989108 8989136 -135293353 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 8989196 8989221 -135293268 + AT_rich Low_complexity Low_complexity 1 25 0 1130 141 22 5 chr12 8989442 8989626 -135292863 + AluSg/x SINE Alu 106 292 -20 22 0 0 0 chr12 8989706 8989728 -135292761 + AT_rich Low_complexity Low_complexity 1 22 0 1084 243 21 0 chr12 8989899 8990187 -135292302 - AluSc SINE Alu -5 294 1 207 100 0 0 chr12 8991079 8991109 -135291380 + (T)n Simple_repeat Simple_repeat 1 30 0 34 24 0 0 chr12 8991395 8991436 -135291053 + AT_rich Low_complexity Low_complexity 1 41 0 34 24 0 0 chr12 8991445 8991486 -135291003 + AT_rich Low_complexity Low_complexity 1 41 0 336 341 5 29 chr12 8991696 8991901 -135290588 - AluY SINE Alu 0 301 102 1092 245 48 75 chr12 8992163 8992579 -135289910 - MLT1F1 LTR MaLR 0 567 163 1031 91 0 85 chr12 8992579 8992755 -135289734 - AluSx SINE Alu -138 174 14 23 0 0 0 chr12 8992761 8992784 -135289705 + AT_rich Low_complexity Low_complexity 1 23 0 1810 86 83 43 chr12 8993377 8993678 -135288811 + AluSp SINE Alu 1 313 0 2080 106 0 0 chr12 8993738 8994022 -135288467 + AluSx SINE Alu 21 304 -8 254 286 143 0 chr12 8994776 8994874 -135287615 + L2 LINE L2 3153 3264 -8 1331 173 59 7 chr12 8995823 8996095 -135286394 + AluJb SINE Alu 1 286 -26 2042 141 0 3 chr12 8996253 8996558 -135285931 - AluSx SINE Alu -8 304 1 1907 142 3 0 chr12 8996933 8997221 -135285268 - AluJo SINE Alu -19 293 5 315 208 39 0 chr12 8998023 8998100 -135284389 + MER94 DNA DNA 4 83 -51 316 125 0 0 chr12 8998147 8998195 -135284294 - MIR SINE MIR -32 230 183 2072 118 3 0 chr12 8998210 8998515 -135283974 - AluSx SINE Alu -6 306 1 1503 168 28 28 chr12 8998515 8998806 -135283683 - AluJo SINE Alu -16 296 6 187 162 0 27 chr12 8998807 8998844 -135283645 - MIR SINE MIR -66 196 161 1589 249 46 60 chr12 8998894 8999395 -135283094 - MLT1F1 LTR MaLR 0 567 74 396 210 12 0 chr12 8999450 8999531 -135282958 + MER5A DNA MER1_type 24 105 -84 255 231 148 19 chr12 8999469 8999577 -135282912 - MER5A DNA MER1_type -31 158 37 * 206 229 104 0 chr12 8999939 8999987 -135282502 + MIR SINE MIR 204 256 -6 2272 101 0 0 chr12 9000405 9000711 -135281778 - AluSg SINE Alu -3 307 2 675 259 81 0 chr12 9001550 9001724 -135280765 + MIR SINE MIR 67 254 -8 309 328 145 0 chr12 9001836 9001967 -135280522 + L2 LINE L2 3119 3268 -4 1044 68 0 0 chr12 9002432 9002565 -135279924 - AluSp SINE Alu -180 133 1 342 231 138 23 chr12 9003678 9003808 -135278681 + MIR3 SINE MIR 1 145 -63 1895 144 0 10 chr12 9003822 9004121 -135278368 + AluJb SINE Alu 3 298 -14 1036 163 22 11 chr12 9004135 9004319 -135278170 + MER5A DNA MER1_type 4 189 0 837 204 50 64 chr12 9004402 9004660 -135277829 - MIR SINE MIR -8 254 3 709 138 110 0 chr12 9004926 9005035 -135277454 + AluSg SINE Alu 2 122 -188 1886 133 27 10 chr12 9005085 9005386 -135277103 - AluSx SINE Alu -6 306 1 392 283 6 142 chr12 9005451 9005549 -135276940 + MIR SINE MIR 12 74 -134 1641 163 16 23 chr12 9005549 9005856 -135276633 - AluJb SINE Alu -1 311 7 392 283 6 142 chr12 9005856 9005955 -135276534 + MIR SINE MIR 74 185 -23 2446 59 0 0 chr12 9006997 9007303 -135275186 - AluY SINE Alu -2 309 4 1968 116 0 0 chr12 9007303 9007579 -135274910 - AluSq SINE Alu -36 277 1 2104 114 7 0 chr12 9007714 9008020 -135274469 - AluSx SINE Alu -4 308 1 2219 70 7 17 chr12 9008624 9008924 -135273565 - AluSp SINE Alu -16 297 1 2304 102 0 0 chr12 9009750 9010055 -135272434 + AluSq SINE Alu 1 305 -8 1818 127 0 115 chr12 9010403 9010743 -135271746 + AluSx SINE Alu 2 302 0 2174 71 3 3 chr12 9010777 9011091 -135271398 + AluSp SINE Alu 1 314 0 203 352 55 23 chr12 9011092 9011220 -135271269 - L2 LINE L2 -598 2716 2585 193 357 107 0 chr12 9011330 9011442 -135271047 - L2 LINE L2 0 3313 3190 2343 54 40 0 chr12 9011555 9011851 -135270638 + AluY SINE Alu 1 308 -3 28 0 0 0 chr12 9011975 9012003 -135270486 + AT_rich Low_complexity Low_complexity 1 28 0 2124 112 3 0 chr12 9012885 9013180 -135269309 + AluSp SINE Alu 1 296 -17 193 293 0 0 chr12 9013682 9013723 -135268766 + L3 LINE CR1 1520 1560 -17 381 75 0 0 chr12 9013942 9013995 -135268494 + (TG)n Simple_repeat Simple_repeat 2 54 0 204 179 0 0 chr12 9014259 9014298 -135268191 + (TA)n Simple_repeat Simple_repeat 2 40 0 328 286 48 0 chr12 9014363 9014447 -135268042 + L1MC4 LINE L1 6614 6701 -1341 1271 205 13 20 chr12 9014907 9015205 -135267284 - MER33 DNA MER1_type -1 323 28 606 248 135 50 chr12 9015218 9015440 -135267049 + MIR SINE MIR 3 243 -19 2391 73 0 0 chr12 9015784 9016086 -135266403 - AluY SINE Alu -9 302 1 253 339 43 9 chr12 9016214 9016329 -135266160 - MIR SINE MIR -56 152 34 440 314 158 11 chr12 9016535 9016997 -135265492 - L1M4 LINE L1 -3104 3042 2513 898 120 0 0 chr12 9017007 9017132 -135265357 - AluSq/x SINE Alu -188 125 1 374 333 56 0 chr12 9017132 9017276 -135265213 - L1M4 LINE L1 -3605 2541 2390 2271 95 0 0 chr12 9017417 9017722 -135264767 + AluY SINE Alu 1 305 -6 1644 177 46 33 chr12 9017799 9018019 -135264470 - Charlie1b DNA MER1_type -2238 523 294 2168 118 0 13 chr12 9018019 9018333 -135264156 + AluSg SINE Alu 1 310 0 1644 177 46 33 chr12 9018333 9018501 -135263988 - Charlie1b DNA MER1_type -2467 294 130 592 213 32 58 chr12 9018537 9018692 -135263797 - Charlie1b DNA MER1_type -371 152 2 849 162 0 0 chr12 9018762 9018898 -135263591 - AluSg/x SINE Alu -15 295 160 825 224 51 90 chr12 9018952 9019287 -135263202 - L2 LINE L2 -4 3309 2988 21 0 0 0 chr12 9019518 9019539 -135262950 + AT_rich Low_complexity Low_complexity 1 21 0 2240 85 0 0 chr12 9019539 9019834 -135262655 - AluSx SINE Alu -16 296 2 1777 118 46 14 chr12 9020617 9020897 -135261592 - AluSx SINE Alu -23 289 1 2056 125 0 22 chr12 9020939 9021258 -135261231 - AluSx SINE Alu 0 312 1 1895 136 3 0 chr12 9021911 9022205 -135260284 + AluSx SINE Alu 1 295 -17 5902 118 11 14 chr12 9022835 9023540 -135258949 + L1PA16 LINE L1 5119 5824 -342 1947 117 3 3 chr12 9023540 9023845 -135258644 + AluSq SINE Alu 1 305 0 5902 118 11 14 chr12 9023845 9024166 -135258323 + L1PA16 LINE L1 5824 6144 -22 1766 158 3 0 chr12 9024201 9024513 -135257976 + AluSx SINE Alu 1 313 0 1974 129 3 0 chr12 9024730 9025025 -135257464 + AluSx SINE Alu 2 297 -15 367 316 62 23 chr12 9025406 9025583 -135256906 - L2 LINE L2 -11 3302 3119 1984 123 7 17 chr12 9025601 9025893 -135256596 + AluSx SINE Alu 1 289 -23 336 364 0 0 chr12 9026028 9026149 -135256340 - L2 LINE L2 -600 2714 2594 307 258 0 0 chr12 9026230 9026296 -135256193 - MER92C LTR ERV1 -2 552 487 455 201 29 148 chr12 9026362 9026571 -135255918 - MER92C LTR ERV1 -370 184 1 571 261 134 90 chr12 9026652 9027165 -135255324 - MER34 LTR ERV1 -6 536 1 2627 53 0 0 chr12 9027249 9027549 -135254940 + AluY SINE Alu 1 300 -11 793 140 0 59 chr12 9028199 9028335 -135254154 + FLAM_C SINE Alu 1 128 -5 207 233 0 0 chr12 9028339 9028382 -135254107 + L2 LINE L2 2710 2752 -562 181 324 84 67 chr12 9028548 9028786 -135253703 + L2 LINE L2 2942 3183 -89 355 259 39 18 chr12 9028815 9028966 -135253523 + MLT1J1 LTR MaLR 24 141 -305 2388 103 3 0 chr12 9028986 9029296 -135253193 - AluSq SINE Alu -2 311 1 2251 114 0 7 chr12 9029298 9029605 -135252884 - AluSx SINE Alu -7 305 1 378 170 93 30 chr12 9029605 9029786 -135252703 - L1M3 LINE L1 -686 5485 5283 3991 84 0 18 chr12 9029786 9030047 -135252442 - L1PA14 LINE L1 -1 6160 5896 1539 112 0 66 chr12 9030047 9030289 -135252200 - AluSg/x SINE Alu -3 309 84 3991 84 0 18 chr12 9030289 9030575 -135251914 - L1PA14 LINE L1 -265 5896 5623 378 170 93 30 chr12 9030575 9030602 -135251887 - L1M3 LINE L1 -888 5283 5259 424 252 10 0 chr12 9030659 9030762 -135251727 - L1M3 LINE L1 -915 5231 5128 510 184 0 0 chr12 9030785 9030872 -135251617 + AluJ/FLAM SINE Alu 3 89 -223 1525 271 117 22 chr12 9030905 9030961 -135251528 - L1M3 LINE L1 -1053 5093 5044 1807 146 0 47 chr12 9030961 9031283 -135251206 - AluJb SINE Alu -5 307 1 1525 271 117 22 chr12 9031283 9031530 -135250959 - L1M3 LINE L1 -1102 5044 4822 315 0 0 0 chr12 9031530 9031565 -135250924 + (CA)n Simple_repeat Simple_repeat 1 35 0 1525 271 117 22 chr12 9031565 9032078 -135250411 - L1M3 LINE L1 -1324 4822 4198 744 134 97 143 chr12 9032208 9032381 -135250108 - MLT1B LTR MaLR -183 207 43 1518 132 45 66 chr12 9032381 9032701 -135249788 + AluJo SINE Alu 1 314 0 744 134 97 143 chr12 9032701 9032743 -135249746 - MLT1B LTR MaLR -347 43 1 650 227 89 65 chr12 9032808 9033215 -135249274 + LTR30 LTR ERV1 127 595 0 31 0 0 0 chr12 9033329 9033360 -135249129 + AT_rich Low_complexity Low_complexity 1 31 0 1971 148 14 0 chr12 9033397 9033688 -135248801 - AluJb SINE Alu -17 295 1 1505 199 87 84 chr12 9033692 9033926 -135248563 - Charlie2 DNA MER1_type -327 2535 2303 2190 119 3 0 chr12 9033926 9034219 -135248270 - AluSx SINE Alu -18 294 1 1505 199 87 84 chr12 9034219 9034347 -135248142 - Charlie2 DNA MER1_type -559 2303 2177 2179 103 34 0 chr12 9034347 9034638 -135247851 - AluSx SINE Alu -11 301 1 1505 199 87 84 chr12 9034638 9034918 -135247571 - Charlie2 DNA MER1_type -685 2177 1890 333 246 254 31 chr12 9034949 9034984 -135247505 - Charlie2 DNA MER1_type -2464 318 292 219 69 0 0 chr12 9034984 9035013 -135247476 + (TG)n Simple_repeat Simple_repeat 1 29 0 333 246 254 31 chr12 9035013 9035237 -135247252 - Charlie2 DNA MER1_type -2490 292 1 632 253 69 0 chr12 9035249 9035423 -135247066 + MIR SINE MIR 32 217 -45 599 174 60 7 chr12 9035453 9035602 -135246887 + L1MA10 LINE L1 6174 6330 -4 2235 112 20 3 chr12 9035603 9035907 -135246582 + AluSx SINE Alu 3 311 -1 602 206 7 29 chr12 9035932 9036068 -135246421 - AluJb SINE Alu -178 134 2 863 194 123 144 chr12 9036450 9036825 -135245664 - MER110A LTR ERV1 -5 463 82 1438 85 0 5 chr12 9036825 9037025 -135245464 + L1PB1 LINE L1 5951 6149 -2 863 194 123 144 chr12 9037025 9037041 -135245448 - MER110A LTR ERV1 -386 82 67 1501 100 63 48 chr12 9037041 9037179 -135245310 - L1MA2 LINE L1 -7 6297 6163 2125 120 0 3 chr12 9037179 9037471 -135245018 + AluSx SINE Alu 1 291 -21 1501 100 63 48 chr12 9037471 9037601 -135244888 - L1MA2 LINE L1 -141 6163 6025 863 194 123 144 chr12 9037601 9037728 -135244761 - MER110A LTR ERV1 -401 67 1 2282 108 0 7 chr12 9037800 9038107 -135244382 - AluSx SINE Alu -7 305 1 202 346 81 58 chr12 9038523 9038783 -135243706 - L2 LINE L2 -69 3203 2938 2404 55 41 0 chr12 9038872 9039164 -135243325 - AluY SINE Alu -7 304 1 260 283 22 22 chr12 9039396 9039488 -135243001 - MIR3 SINE MIR -5 203 112 32 0 0 0 chr12 9039503 9039535 -135242954 + AT_rich Low_complexity Low_complexity 1 32 0 2136 82 7 34 chr12 9039536 9039849 -135242640 - AluSq SINE Alu 0 305 1 268 136 0 0 chr12 9039849 9039893 -135242596 + Charlie2 DNA MER1_type 2758 2801 -61 23 0 0 0 chr12 9039924 9039947 -135242542 + AT_rich Low_complexity Low_complexity 1 23 0 769 239 226 56 chr12 9040472 9041041 -135241448 - L1ME3A LINE L1 -208 5962 5270 2246 117 16 0 chr12 9041041 9041348 -135241141 - AluSx SINE Alu 0 312 1 769 239 226 56 chr12 9041348 9041433 -135241056 - L1ME3A LINE L1 -900 5270 5201 842 205 0 0 chr12 9041446 9041612 -135240877 - L1M3 LINE L1 -598 5582 5417 271 323 92 5 chr12 9041609 9041790 -135240699 - L1ME3A LINE L1 -933 5213 5012 * 1969 137 0 14 chr12 9041790 9042075 -135240414 - AluSx SINE Alu -31 281 1 271 323 92 5 chr12 9042075 9042088 -135240401 - L1ME3A LINE L1 -1134 5012 5002 615 122 112 0 chr12 9042599 9042697 -135239792 - AluSq/x SINE Alu -202 110 2 805 196 89 124 chr12 9042704 9043163 -135239326 - MER34B LTR ERV1 -102 440 12 621 124 0 0 chr12 9043270 9043359 -135239130 - LTR8 LTR ERV1 -545 146 58 1804 119 54 11 chr12 9043364 9043641 -135238848 + AluJb SINE Alu 9 297 -15 1865 125 3 28 chr12 9043728 9044017 -135238472 + AluSx SINE Alu 1 282 -30 2204 105 3 7 chr12 9044017 9044312 -135238177 + AluSc SINE Alu 2 295 -14 1092 227 133 0 chr12 9044358 9044658 -135237831 + L2 LINE L2 2437 2776 -538 2609 160 88 25 chr12 9044658 9045274 -135237215 - MER39 LTR ERV1 0 707 1 762 300 119 50 chr12 9045347 9045396 -135237093 + L2 LINE L2 2819 2863 -450 2609 92 3 8 chr12 9045396 9045753 -135236736 - THE1A LTR MaLR 0 355 1 11685 84 16 24 chr12 9045753 9045847 -135236642 - THE1A-int LTR MaLR 0 1580 1487 2499 64 3 0 chr12 9045847 9046144 -135236345 - AluSp SINE Alu -15 298 1 11685 84 16 24 chr12 9046144 9046789 -135235700 - THE1A-int LTR MaLR -93 1487 838 2401 94 0 0 chr12 9046789 9047088 -135235401 - AluSg SINE Alu -11 299 1 11685 84 16 24 chr12 9047088 9047729 -135234760 - THE1A-int LTR MaLR -742 838 211 2446 82 7 0 chr12 9047729 9048034 -135234455 - AluSp SINE Alu -6 307 1 11685 84 16 24 chr12 9048034 9048244 -135234245 - THE1A-int LTR MaLR -1369 211 1 2584 81 5 48 chr12 9048244 9048545 -135233944 - THE1A LTR MaLR 0 355 71 2009 98 33 65 chr12 9048545 9048851 -135233638 - AluSq SINE Alu -17 296 1 2584 81 5 48 chr12 9048851 9048920 -135233569 - THE1A LTR MaLR -284 71 1 762 300 119 50 chr12 9048920 9049331 -135233158 + L2 LINE L2 2862 3313 0 461 246 66 0 chr12 9049332 9049454 -135233035 - L2 LINE L2 -810 2504 2375 1102 195 35 23 chr12 9049745 9050002 -135232487 + LTR37B LTR ERV1 209 468 0 1187 216 36 73 chr12 9050182 9050539 -135231950 + MER34 LTR ERV1 1 344 -198 988 152 46 78 chr12 9050552 9050682 -135231807 + MER2 DNA MER2_type 1 123 -222 1829 162 27 0 chr12 9050682 9050979 -135231510 - AluSx SINE Alu -7 305 1 988 152 46 78 chr12 9050979 9051065 -135231424 + MER2 DNA MER2_type 123 210 -135 754 81 0 118 chr12 9051088 9051224 -135231265 - AluSp/q SINE Alu 0 313 194 365 133 33 0 chr12 9051235 9051295 -135231194 - AluSx SINE Alu -3 299 238 4226 145 34 24 chr12 9051307 9051882 -135230607 - MER51B-int LTR ERV1 -6357 1459 891 2101 136 0 7 chr12 9051882 9052183 -135230306 - AluSx SINE Alu -13 299 1 4226 145 34 24 chr12 9052183 9052969 -135229520 - MER51B-int LTR ERV1 -6925 891 1 2024 114 135 3 chr12 9052969 9053302 -135229187 - MER51B LTR ERV1 0 377 1 1721 131 17 0 chr12 9053302 9053539 -135228950 - AluSx SINE Alu -71 241 1 338 169 34 34 chr12 9053539 9053628 -135228861 + MER34 LTR ERV1 380 468 -74 2177 99 3 0 chr12 9053651 9053934 -135228555 - AluSg SINE Alu -26 284 1 2155 111 17 0 chr12 9053936 9054233 -135228256 - AluSx SINE Alu -10 302 1 284 152 242 30 chr12 9054247 9054313 -135228176 - AluSg/x SINE Alu -62 238 159 300 182 61 0 chr12 9054320 9054386 -135228103 + MER34 LTR ERV1 473 542 0 530 129 0 138 chr12 9054394 9054510 -135227979 - MLT1D LTR MaLR 0 626 527 2360 82 3 7 chr12 9054517 9054823 -135227666 + AluSp SINE Alu 9 313 0 401 176 0 0 chr12 9054838 9054906 -135227583 + AluS SINE Alu 2 69 -244 1121 66 0 0 chr12 9054906 9055043 -135227446 + AluSg/x SINE Alu 171 307 -3 1241 128 0 60 chr12 9055046 9055264 -135227225 + AluSg/x SINE Alu 103 307 -3 1504 193 57 71 chr12 9055291 9055711 -135226778 - MLT1D LTR MaLR -91 414 1 466 297 70 16 chr12 9055973 9056158 -135226331 + MIR SINE MIR 14 208 -54 202 306 153 8 chr12 9056546 9056670 -135225819 - MIR SINE MIR -27 235 94 329 224 47 47 chr12 9059050 9059157 -135223332 + L2 LINE L2 3200 3306 -7 229 240 13 53 chr12 9059490 9059565 -135222924 + CT-rich Low_complexity Low_complexity 1 72 0 200 308 0 0 chr12 9059803 9059855 -135222634 + GA-rich Low_complexity Low_complexity 1 52 0 222 254 0 0 chr12 9059932 9059987 -135222502 + G-rich Low_complexity Low_complexity 1 55 0 37 86 0 0 chr12 9060119 9060212 -135222277 + GC_rich Low_complexity Low_complexity 1 93 0 180 259 136 12 chr12 9062303 9062384 -135220105 - MIR SINE MIR -62 146 56 248 324 49 10 chr12 9062416 9062518 -135219971 + MIR SINE MIR 64 169 -93 249 243 14 14 chr12 9063387 9063461 -135219028 + MIR3 SINE MIR 120 193 -15 896 178 59 0 chr12 9063997 9064166 -135218323 - AluJo SINE Alu -12 300 122 783 252 0 0 chr12 9064315 9064466 -135218023 - Tigger3(Golem) DNA MER2_type 0 3029 2879 260 283 0 0 chr12 9064467 9064527 -135217962 - Tigger3(Golem) DNA MER2_type -2969 60 1 2294 89 0 3 chr12 9064589 9064880 -135217609 - AluSq SINE Alu -23 290 1 1338 166 21 33 chr12 9064880 9065121 -135217368 + AluJo SINE Alu 53 290 -22 1005 181 101 8 chr12 9065596 9065894 -135216595 + MER33 DNA MER1_type 1 324 0 2241 107 0 0 chr12 9065945 9066235 -135216254 + AluSx SINE Alu 1 290 -22 2359 90 0 0 chr12 9067343 9067633 -135214856 - AluSx SINE Alu -22 290 1 236 280 21 11 chr12 9068054 9068147 -135214342 + CT-rich Low_complexity Low_complexity 2 95 0 1010 237 76 58 chr12 9069003 9069066 -135213423 - MER2 DNA MER2_type -10 335 275 2542 62 0 7 chr12 9069066 9069371 -135213118 + AluY SINE Alu 1 303 -8 1010 237 76 58 chr12 9069371 9069636 -135212853 - MER2 DNA MER2_type -70 275 1 2231 118 3 0 chr12 9069714 9070010 -135212479 + AluSx SINE Alu 1 297 -15 619 244 115 10 chr12 9070608 9070817 -135211672 + MIR SINE MIR 13 243 -19 446 291 149 73 chr12 9070867 9071854 -135210635 - L2 LINE L2 -80 3192 2282 2081 119 3 14 chr12 9071854 9072148 -135210341 + AluSx SINE Alu 1 291 -21 2263 87 3 17 chr12 9072148 9072446 -135210043 + AluSq SINE Alu 1 294 -19 446 291 149 73 chr12 9072446 9073265 -135209224 - L2 LINE L2 -989 2283 1243 1786 133 22 7 chr12 9073373 9073726 -135208763 - AluSx SINE Alu 0 357 1 472 210 132 30 chr12 9074115 9074282 -135208207 - L1MC5 LINE L1 -36 7925 7742 892 290 74 14 chr12 9074306 9074671 -135207818 - L1ME3A LINE L1 -256 5914 5528 309 282 29 29 chr12 9074757 9074860 -135207629 - L2 LINE L2 -17 3296 3194 31 82 0 0 chr12 9074975 9075048 -135207441 + AT_rich Low_complexity Low_complexity 1 73 0 1772 156 38 7 chr12 9075051 9075339 -135207150 - AluJb SINE Alu -15 297 1 403 300 162 73 chr12 9075351 9075678 -135206811 + L2 LINE L2 2917 3272 0 183 220 0 0 chr12 9076495 9076545 -135205944 + T-rich Low_complexity Low_complexity 1 50 0 230 248 158 20 chr12 9076734 9076835 -135205654 - L2 LINE L2 -4 3309 3195 1985 123 4 0 chr12 9076938 9077215 -135205274 + AluSx SINE Alu 1 278 -34 262 364 68 0 chr12 9077626 9077744 -135204745 - L2 LINE L2 -5 3267 3142 342 98 0 0 chr12 9078248 9078299 -135204190 + (CAG)n Simple_repeat Simple_repeat 3 53 0 260 229 0 0 chr12 9080303 9080351 -135202138 - MIR SINE MIR -137 71 24 2156 113 0 3 chr12 9080863 9081154 -135201335 + AluSx SINE Alu 1 290 -22 2408 61 0 10 chr12 9081288 9081583 -135200906 - AluSp SINE Alu -21 292 1 1820 167 7 3 chr12 9081618 9081906 -135200583 + AluJb SINE Alu 1 289 -23 916 132 0 29 chr12 9083965 9084101 -135198388 - FLAM_C SINE Alu -1 132 1 1820 178 0 3 chr12 9084341 9084645 -135197844 - AluJb SINE Alu -9 303 1 23 33 0 0 chr12 9085767 9085797 -135196692 + AT_rich Low_complexity Low_complexity 1 30 0 483 192 77 0 chr12 9087784 9087888 -135194601 - MER81 DNA DNA 0 114 3 2177 104 7 0 chr12 9088471 9088758 -135193731 - AluSq SINE Alu -11 302 14 241 291 155 0 chr12 9089943 9090046 -135192443 - MIR SINE MIR -60 148 30 2185 102 3 3 chr12 9090398 9090691 -135191798 + AluSc SINE Alu 1 293 -16 518 205 34 26 chr12 9093115 9093232 -135189257 - MIR SINE MIR -32 230 113 325 260 52 58 chr12 9093795 9093949 -135188540 - MIR SINE MIR -39 223 71 787 226 85 9 chr12 9096251 9096463 -135186026 - MIR SINE MIR -33 229 2 26 0 0 0 chr12 9096551 9096577 -135185912 + AT_rich Low_complexity Low_complexity 1 26 0 1743 154 15 0 chr12 9096721 9096993 -135185496 + AluJo SINE Alu 12 287 -25 268 200 30 110 chr12 9097144 9097244 -135185245 - L2 LINE L2 -8 3305 3214 1277 150 0 0 chr12 9097824 9098011 -135184478 - AluJb SINE Alu -125 187 1 597 237 139 40 chr12 9098074 9098423 -135184066 - L1MC4 LINE L1 0 8042 7631 493 178 14 82 chr12 9098426 9098511 -135183978 - L1MC4 LINE L1 -460 7582 7510 2742 185 58 45 chr12 9098511 9099137 -135183352 - LTR27 LTR ERV1 0 636 3 493 178 14 82 chr12 9099137 9099197 -135183292 - L1MC4 LINE L1 -532 7510 7447 376 280 60 24 chr12 9099204 9099372 -135183117 - LTR41 LTR ERVL -1 772 599 529 216 9 0 chr12 9099536 9099647 -135182842 - L1MC4 LINE L1 -1068 6974 6863 1878 183 81 15 chr12 9099652 9100062 -135182427 + L1MA9 LINE L1 5843 6279 -33 803 251 54 4 chr12 9100067 9100386 -135182103 - L1MC4a LINE L1 -1024 6784 6358 2304 94 7 0 chr12 9100435 9100732 -135181757 - AluSg SINE Alu -11 299 1 710 198 29 122 chr12 9100732 9100902 -135181587 - L1ME2 LINE L1 -33 6131 5988 1712 191 16 7 chr12 9100902 9101211 -135181278 - AluJb SINE Alu 0 312 1 710 198 29 122 chr12 9101211 9101278 -135181211 - L1ME2 LINE L1 -176 5988 5916 1324 231 169 105 chr12 9101296 9101962 -135180527 + MER52A LTR ERV1 669 1425 -330 2055 138 0 7 chr12 9101962 9102266 -135180223 - AluSx SINE Alu -10 302 1 1324 231 169 105 chr12 9102266 9102620 -135179869 + MER52A LTR ERV1 1425 1755 0 246 224 109 61 chr12 9102620 9102738 -135179751 - L1ME2 LINE L1 -252 5910 5780 3905 165 43 63 chr12 9102738 9103483 -135179006 - MER44D DNA MER2_type 0 605 4 246 224 109 61 chr12 9103483 9103529 -135178960 - L1ME2 LINE L1 -382 5780 5738 813 183 8 0 chr12 9103584 9103715 -135178774 - AluJo SINE Alu -178 134 3 1519 216 65 34 chr12 9103715 9104094 -135178395 - L1ME2 LINE L1 -1140 5006 4608 1940 148 7 7 chr12 9104094 9104391 -135178098 + AluJb SINE Alu 1 297 -15 1519 216 65 34 chr12 9104391 9104484 -135178005 - L1ME2 LINE L1 -1538 4608 4519 1141 239 139 109 chr12 9104484 9105190 -135177299 + LTR8A LTR ERV1 1 727 0 779 259 68 3 chr12 9105190 9105484 -135177005 - L1ME2 LINE L1 -1624 4522 4210 1331 279 10 25 chr12 9105503 9105908 -135176581 + L1MEc LINE L1 35 433 -5963 568 274 24 12 chr12 9105911 9106075 -135176414 + L1MEc LINE L1 475 640 -5756 1166 244 8 18 chr12 9106119 9106400 -135176089 + LTR40a LTR ERVL 17 230 -232 365 247 62 0 chr12 9106511 9106608 -135175881 - MIR SINE MIR -70 192 90 1131 282 4 0 chr12 9106608 9106856 -135175633 + LTR40a LTR ERVL 271 519 0 1854 260 72 63 chr12 9106856 9106923 -135175566 + L1MEc LINE L1 673 738 -5658 207 0 0 0 chr12 9106923 9106946 -135175543 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2023 115 11 28 chr12 9106949 9107236 -135175253 - AluSq SINE Alu -30 283 2 1854 260 72 63 chr12 9107236 9107323 -135175166 + L1MEc LINE L1 739 824 -5572 1663 195 0 0 chr12 9107323 9107605 -135174884 + AluJo SINE Alu 1 282 -30 1854 260 72 63 chr12 9107605 9107951 -135174538 + L1MEc LINE L1 824 1165 -5231 2099 136 0 13 chr12 9107951 9108267 -135174222 + AluJb SINE Alu 1 312 0 1854 260 72 63 chr12 9108267 9108872 -135173617 + L1MEc LINE L1 1165 1794 -4602 * 13940 32 0 1 chr12 9108869 9110527 -135171962 - L1P LINE L1 -2310 3836 2180 13759 26 5 0 chr12 9110503 9112845 -135169644 + L1PA4 LINE L1 3782 6132 -23 * 189 0 0 0 chr12 9112865 9112886 -135169603 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2418 218 104 57 chr12 9112886 9112959 -135169530 + L1MEc LINE L1 1793 1861 -4354 1608 153 20 43 chr12 9112959 9113259 -135169230 + AluJo SINE Alu 1 293 -19 2418 218 104 57 chr12 9113259 9114495 -135167994 + L1MEc LINE L1 1861 3086 -3129 1163 251 125 25 chr12 9115052 9115351 -135167138 + L1MEc LINE L1 3095 3363 -2852 1866 157 0 7 chr12 9115351 9115664 -135166825 + AluJb SINE Alu 1 311 0 1163 251 125 25 chr12 9115664 9115675 -135166814 + L1MEc LINE L1 3363 3371 -2844 1033 241 32 0 chr12 9115675 9115891 -135166598 + MER58A DNA MER1_type 2 224 0 1163 251 125 25 chr12 9115891 9116057 -135166432 + L1MEc LINE L1 3371 3621 -2594 2043 247 87 27 chr12 9116104 9116991 -135165498 - L1M4 LINE L1 -1947 4199 3260 2074 77 37 53 chr12 9117001 9117300 -135165189 - AluSx SINE Alu -8 304 11 554 159 11 0 chr12 9117301 9117389 -135165100 + FLAM_A SINE Alu 40 128 -14 12530 203 31 36 chr12 9117399 9117682 -135164807 - L1M2 LINE L1 -867 5343 5060 2470 57 0 7 chr12 9117682 9117978 -135164511 - AluY SINE Alu -17 294 1 12530 203 31 36 chr12 9117978 9118378 -135164111 - L1M2 LINE L1 -1150 5060 4660 2301 94 0 55 chr12 9118378 9118708 -135163781 + AluSx SINE Alu 1 312 0 12530 203 31 36 chr12 9118708 9118766 -135163723 - L1M2 LINE L1 -1550 4660 4603 1227 135 89 163 chr12 9118766 9119159 -135163330 + MLT1A1 LTR MaLR 2 365 0 12530 203 31 36 chr12 9119159 9119665 -135162824 - L1M2 LINE L1 -1607 4603 4096 2476 46 0 0 chr12 9119665 9119986 -135162503 - AluY SINE Alu 0 321 1 12530 203 31 36 chr12 9119986 9120406 -135162083 - L1M2 LINE L1 -2114 4096 3675 2125 115 0 14 chr12 9120406 9120719 -135161770 - AluSx SINE Alu 0 309 1 12530 203 31 36 chr12 9120719 9121071 -135161418 - L1M2 LINE L1 -2535 3675 3323 1832 168 13 7 chr12 9121071 9121381 -135161108 - AluJb SINE Alu 0 312 1 12530 203 31 36 chr12 9121381 9122272 -135160217 - L1M2 LINE L1 -2887 3323 2429 2040 126 0 17 chr12 9122272 9122566 -135159923 - AluSq SINE Alu -20 293 5 12530 203 31 36 chr12 9122566 9122727 -135159762 - L1M2 LINE L1 -3781 2429 2269 2255 82 0 36 chr12 9122727 9123033 -135159456 - AluY SINE Alu -16 295 1 12530 203 31 36 chr12 9123033 9123242 -135159247 - L1M2 LINE L1 -3941 2269 2060 1204 127 0 0 chr12 9123389 9123555 -135158934 - AluSg/x SINE Alu -23 289 124 638 231 57 45 chr12 9123603 9123850 -135158639 - L1 LINE L1 -4411 3154 2905 602 219 106 8 chr12 9123871 9123994 -135158495 - AluJo SINE Alu -176 136 2 594 180 78 0 chr12 9123997 9124125 -135158364 - L1M2 LINE L1 -4327 3239 3102 734 51 17 25 chr12 9124137 9124255 -135158234 + (TTTC)n Simple_repeat Simple_repeat 2 118 0 1848 163 0 0 chr12 9124257 9124534 -135157955 - AluSx SINE Alu -35 277 1 2058 137 3 10 chr12 9124538 9124837 -135157652 - AluSx SINE Alu -15 297 1 2567 201 42 29 chr12 9124839 9125414 -135157075 - L1M2 LINE L1 -4327 3239 2632 2117 108 3 56 chr12 9125414 9125738 -135156751 - AluSq SINE Alu -6 307 1 2567 201 42 29 chr12 9125738 9126038 -135156451 - L1M2 LINE L1 -4934 2632 2337 574 303 50 24 chr12 9126213 9126676 -135155813 - L1M2 LINE L1 -5292 2274 1365 1409 250 93 35 chr12 9126682 9127550 -135154939 - L1ME LINE L1 -2887 3328 2395 1589 215 83 59 chr12 9127550 9128043 -135154446 + MLT1D LTR MaLR 1 505 0 1409 250 93 35 chr12 9128043 9128151 -135154338 - L1ME LINE L1 -3820 2395 2295 2328 113 0 0 chr12 9128164 9128465 -135154024 - AluSq SINE Alu -12 301 1 255 256 65 36 chr12 9128470 9128638 -135153851 - L1ME LINE L1 -4056 2340 2168 * 1043 297 37 36 chr12 9128632 9128915 -135153574 - L1ME LINE L1 -4541 1855 1574 2330 105 0 0 chr12 9128915 9129220 -135153269 - AluSq SINE Alu -8 305 1 1043 297 37 36 chr12 9129220 9129720 -135152769 - L1ME LINE L1 -4822 1574 1071 1462 121 0 5 chr12 9129738 9129937 -135152552 - AluSg/x SINE Alu -28 282 85 941 122 8 0 chr12 9129941 9130072 -135152417 - AluSq/x SINE Alu -180 132 1 381 266 41 18 chr12 9130106 9130413 -135152076 - L1ME LINE L1 -5199 1006 696 * 1583 199 68 10 chr12 9130403 9130800 -135151689 - L1MD3 LINE L1 0 7995 7576 2830 181 29 26 chr12 9130808 9131355 -135151134 - MER21A LTR ERV1 -6 925 377 1188 147 69 17 chr12 9131400 9131632 -135150857 - MER21A LTR ERV1 -686 245 2 746 183 17 39 chr12 9131633 9131813 -135150676 - L1MD3 LINE L1 -416 7579 7404 312 267 11 0 chr12 9131815 9131905 -135150584 - MLT1F1 LTR MaLR -442 125 35 1164 163 125 29 chr12 9131905 9132218 -135150271 - L1MD3 LINE L1 -879 7116 6774 2531 111 67 7 chr12 9132229 9132633 -135149856 + MSTA LTR MaLR 1 428 0 1643 169 36 22 chr12 9132654 9132697 -135149792 - L1MB2 LINE L1 -42 6129 6088 1369 218 48 61 chr12 9132697 9133092 -135149397 + MLT1B LTR MaLR 1 390 0 1643 169 36 22 chr12 9133092 9133404 -135149085 - L1MB2 LINE L1 -83 6088 5769 502 307 120 7 chr12 9133675 9133975 -135148514 - L1ME LINE L1 -6041 355 22 188 293 27 0 chr12 9134003 9134078 -135148411 + L2 LINE L2 2137 2213 -1101 2190 90 3 20 chr12 9134101 9134401 -135148088 - AluSq SINE Alu -18 295 1 22 0 0 0 chr12 9136920 9136942 -135145547 + AT_rich Low_complexity Low_complexity 1 22 0 950 276 70 6 chr12 9137110 9137469 -135145020 - L1MC4a LINE L1 -1904 5904 5523 1440 125 20 162 chr12 9138006 9138357 -135144132 - AluJb SINE Alu -1 301 1 180 0 0 0 chr12 9138601 9138621 -135143868 + (T)n Simple_repeat Simple_repeat 1 20 0 2182 97 0 29 chr12 9138798 9139107 -135143382 - AluSg SINE Alu -10 300 1 2065 123 3 7 chr12 9139593 9139885 -135142604 - AluSx SINE Alu -21 291 1 221 0 35 0 chr12 9140836 9140865 -135141624 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 259 197 40 26 chr12 9140940 9141016 -135141473 + CT-rich Low_complexity Low_complexity 5 81 0 2190 96 7 7 chr12 9141203 9141496 -135140993 - AluSc SINE Alu -11 298 6 1258 113 11 0 chr12 9143303 9143480 -135139009 - AluSq SINE Alu -10 303 125 207 241 106 128 chr12 9143487 9143565 -135138924 - MIR SINE MIR -75 187 112 1996 153 0 3 chr12 9143565 9143859 -135138630 + AluSx SINE Alu 1 293 -19 207 241 106 128 chr12 9143859 9143921 -135138568 - MIR SINE MIR -150 112 50 2032 136 3 3 chr12 9143930 9144225 -135138264 + AluJb SINE Alu 5 299 -13 766 96 29 0 chr12 9144416 9144520 -135137969 - FLAM_C SINE Alu -16 127 21 363 247 0 0 chr12 9145186 9145263 -135137226 + MIR SINE MIR 73 149 -113 2109 117 13 10 chr12 9145278 9145577 -135136912 + AluSx SINE Alu 3 302 -10 1344 161 52 2 chr12 9145918 9146352 -135136137 - L1MB3 LINE L1 -7 6176 5686 2833 167 21 2 chr12 9146860 9147346 -135135143 + LTR42 LTR ERVL 1 495 0 36 23 0 0 chr12 9147496 9147539 -135134950 + AT_rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr12 9148089 9148115 -135134374 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1749 173 0 0 chr12 9148120 9148386 -135134103 - AluJb SINE Alu -46 266 1 315 0 0 0 chr12 9148430 9148465 -135134024 + (CA)n Simple_repeat Simple_repeat 2 36 0 188 206 76 130 chr12 9148652 9148783 -135133706 + MIR SINE MIR 24 147 -61 320 141 12 24 chr12 9148875 9148960 -135133529 + Zaphod DNA AcHobo 907 990 -3041 5977 25 0 0 chr12 9149223 9149914 -135132575 - L1PA3 LINE L1 -1 6154 5464 1526 180 3 44 chr12 9150006 9150300 -135132189 - AluJo SINE Alu -30 282 1 28 95 0 0 chr12 9150368 9150452 -135132037 + AT_rich Low_complexity Low_complexity 1 84 0 2950 137 36 46 chr12 9150475 9150612 -135131877 + L1MA5 LINE L1 5640 5777 -523 2157 55 4 0 chr12 9150612 9150881 -135131608 + L1PA7 LINE L1 5878 6150 -4 2950 137 36 46 chr12 9150881 9151184 -135131305 + L1MA5 LINE L1 5777 6075 -225 2064 138 3 37 chr12 9151184 9151533 -135130956 - MER1B DNA MER1_type 0 337 1 2950 137 36 46 chr12 9151533 9151695 -135130794 + L1MA5 LINE L1 6075 6237 -63 910 277 127 4 chr12 9151702 9152115 -135130374 - L2 LINE L2 -110 3203 2727 267 279 23 23 chr12 9152177 9152263 -135130226 + MIR SINE MIR 90 175 -87 275 330 144 0 chr12 9152265 9152430 -135130059 - MIR3 SINE MIR -15 193 1 1913 147 0 32 chr12 9152777 9153090 -135129399 - AluSx SINE Alu -9 303 1 183 188 0 0 chr12 9153431 9153479 -135129010 + T-rich Low_complexity Low_complexity 3 50 0 1341 208 84 23 chr12 9153999 9154346 -135128143 - MLT1A2 LTR MaLR 0 374 7 251 267 9 48 chr12 9154607 9154777 -135127712 + GA-rich Low_complexity Low_complexity 1 163 0 1112 146 0 0 chr12 9155563 9155721 -135126768 + FRAM SINE Alu 5 162 -4 248 318 182 0 chr12 9156169 9156257 -135126232 + L2 LINE L2 3169 3272 0 19195 172 59 40 chr12 9157075 9158996 -135123493 + L1MA3 LINE L1 12 1896 -5828 2249 120 29 56 chr12 9158996 9159370 -135123119 - THE1B LTR MaLR 0 364 1 19195 172 59 40 chr12 9159370 9162136 -135120353 + L1MA3 LINE L1 1896 4609 -3115 2032 145 0 3 chr12 9162136 9162433 -135120056 - AluSx SINE Alu -16 296 1 19195 172 59 40 chr12 9162433 9162543 -135119946 + L1MA3 LINE L1 4609 4715 -3009 2102 96 7 0 chr12 9162543 9162814 -135119675 + AluSq SINE Alu 41 313 0 19195 172 59 40 chr12 9162814 9164115 -135118374 + L1MA3 LINE L1 4715 6365 -1359 661 119 9 28 chr12 9164115 9164224 -135118265 + FLAM_C SINE Alu 37 143 0 19195 172 59 40 chr12 9164224 9165128 -135117361 + L1MA3 LINE L1 6365 7251 -473 215 330 57 0 chr12 9165182 9165270 -135117219 + L2 LINE L2 2386 2478 -836 692 176 0 8 chr12 9165286 9165405 -135117084 - FLAM_C SINE Alu -25 118 1 298 390 14 0 chr12 9165419 9165560 -135116929 + L2 LINE L2 2496 2638 -676 276 149 0 0 chr12 9165564 9165611 -135116878 + (CATA)n Simple_repeat Simple_repeat 2 48 0 670 181 35 0 chr12 9165614 9165730 -135116759 - FLAM_A SINE Alu -13 120 1 1955 221 14 55 chr12 9165752 9166336 -135116153 - L1ME1 LINE L1 -5 6161 5602 2398 130 57 116 chr12 9166336 9166899 -135115590 - Tigger3b DNA MER2_type -1 1230 701 1257 139 5 0 chr12 9166913 9167100 -135115389 - AluSg/x SINE Alu -5 305 118 3466 119 40 39 chr12 9167104 9167498 -135114991 - Tigger3b DNA MER2_type -2345 683 286 949 179 0 24 chr12 9167498 9167666 -135114823 + FAM SINE Alu 1 164 -11 3466 119 40 39 chr12 9167666 9167941 -135114548 - Tigger3b DNA MER2_type -2742 286 13 1477 138 44 40 chr12 9167973 9168248 -135114241 + MER21B LTR ERV1 16 291 -572 2963 176 46 37 chr12 9168263 9168915 -135113574 + MER21B LTR ERV1 203 860 -3 1128 235 41 72 chr12 9168923 9169074 -135113415 - L1ME1 LINE L1 -1011 5135 4981 1612 216 7 0 chr12 9169074 9169375 -135113114 - AluJo SINE Alu -9 303 1 1128 235 41 72 chr12 9169375 9169538 -135112951 - L1ME1 LINE L1 -1165 4981 4814 2288 110 7 0 chr12 9169538 9169846 -135112643 - AluSx SINE Alu -2 310 1 1128 235 41 72 chr12 9169846 9170041 -135112448 - L1ME1 LINE L1 -1332 4814 4641 581 358 98 34 chr12 9170423 9170874 -135111615 - L2 LINE L2 -1211 2103 1682 2163 130 0 10 chr12 9170874 9171173 -135111316 + AluSx SINE Alu 1 296 -16 581 358 98 34 chr12 9171173 9171609 -135110880 - L2 LINE L2 -1632 1682 1159 303 328 35 66 chr12 9171891 9172208 -135110281 - L1MC/D LINE L1 -2211 5597 5291 878 204 0 0 chr12 9172388 9172540 -135109949 - AluJb SINE Alu -25 287 136 882 104 30 12 chr12 9172540 9172704 -135109785 - L1MA8 LINE L1 0 6291 6125 298 359 0 12 chr12 9173237 9173404 -135109085 + (CCA)n Simple_repeat Simple_repeat 1 165 0 2285 105 7 3 chr12 9173663 9173969 -135108520 - AluSx SINE Alu -5 307 1 2308 79 0 3 chr12 9173969 9174261 -135108228 - AluSc SINE Alu -18 291 1 658 98 11 179 chr12 9174671 9174719 -135107770 - L1MA8 LINE L1 -152 6139 6085 2064 118 0 14 chr12 9174719 9175008 -135107481 - AluSq SINE Alu -1 312 28 658 98 11 179 chr12 9175008 9175143 -135107346 - L1MA8 LINE L1 -206 6085 5987 2107 111 17 0 chr12 9175285 9175573 -135106916 - AluSx SINE Alu -19 293 1 764 144 0 0 chr12 9175800 9175918 -135106571 - L1MB4 LINE L1 -1 6179 6062 2147 121 0 3 chr12 9175928 9176225 -135106264 - AluSg SINE Alu -14 296 1 3360 117 58 4 chr12 9176580 9177077 -135105412 - MER4E-int LTR ERV1 -6234 524 1 2218 93 7 0 chr12 9177077 9177367 -135105122 - MER4E LTR ERV1 0 766 475 713 164 114 7 chr12 9177370 9177510 -135104979 - MLT1C LTR MaLR -1 466 312 * 728 208 35 0 chr12 9177493 9177637 -135104852 - MLT2B2 LTR ERVL -366 149 1 2875 187 36 76 chr12 9177899 9178621 -135103868 + LTR8A LTR ERV1 35 727 0 1436 212 10 27 chr12 9178676 9178973 -135103516 + AluJo SINE Alu 3 294 -18 327 135 0 0 chr12 9179605 9179657 -135102832 - MLT2F LTR ERVL 0 663 612 4007 145 16 86 chr12 9179657 9179966 -135102523 + Tigger3b DNA MER2_type 1 330 -2698 2255 87 3 7 chr12 9179966 9180266 -135102223 - AluSq SINE Alu -14 299 1 4007 145 16 86 chr12 9180266 9180715 -135101774 + Tigger3b DNA MER2_type 330 809 -2219 3565 57 0 2 chr12 9180715 9181128 -135101361 + L1PA7 LINE L1 5729 6152 -2 3859 121 14 2 chr12 9181128 9181680 -135100809 + L1PA15 LINE L1 5602 6162 -3 4007 145 16 86 chr12 9181680 9181745 -135100744 + Tigger3b DNA MER2_type 700 768 -463 2739 151 36 2 chr12 9183039 9183488 -135099001 + Tigger3b DNA MER2_type 765 1228 -4 1155 216 39 67 chr12 9183492 9183504 -135098985 - MLT2C1 LTR ERVL -51 346 335 1639 173 4 11 chr12 9183504 9183776 -135098713 + AluJo SINE Alu 9 278 -34 1155 216 39 67 chr12 9183776 9184119 -135098370 - MLT2C1 LTR ERVL -62 335 1 1206 84 11 47 chr12 9184262 9184452 -135098037 + AluSq SINE Alu 127 309 -4 231 211 123 13 chr12 9184766 9184883 -135097606 + L3b LINE CR1 1292 1470 -113 1035 281 74 51 chr12 9186094 9186525 -135095964 - HsTC2a DNA Tc2 -242 502 62 2134 126 7 0 chr12 9186574 9186883 -135095606 + AluSx SINE Alu 2 312 0 591 260 120 73 chr12 9186960 9187428 -135095061 + MLT1H1 LTR MaLR 31 555 0 228 290 21 11 chr12 9187428 9187521 -135094968 + MLT1H1-int LTR MaLR 1 94 -1641 227 273 0 0 chr12 9187569 9187624 -135094865 + MST-int LTR MaLR 238 292 -1359 256 250 76 139 chr12 9188499 9188596 -135093893 + MLT1H1-int LTR MaLR 1074 1176 -195 2235 106 3 10 chr12 9188596 9188897 -135093592 - AluSx SINE Alu -13 299 1 256 250 76 139 chr12 9188897 9189115 -135093374 + MLT1H1-int LTR MaLR 1176 1369 -2 950 240 110 98 chr12 9189129 9189662 -135092827 + MLT1H1 LTR MaLR 11 555 0 370 171 14 0 chr12 9189673 9189743 -135092746 - HsTC2a DNA Tc2 -670 74 4 273 332 79 44 chr12 9189760 9189902 -135092587 + L1ME LINE L1 5326 5462 -708 2192 123 0 7 chr12 9189902 9190203 -135092286 + AluSx SINE Alu 1 299 -13 273 332 79 44 chr12 9190203 9190570 -135091919 + L1ME LINE L1 5462 5851 -319 789 170 23 29 chr12 9190589 9190786 -135091703 + L1MCa LINE L1 1 164 -5881 * 1782 188 99 11 chr12 9190781 9191227 -135091262 + L1MCa LINE L1 709 1193 -4852 * 3407 65 39 11 chr12 9191217 9191676 -135090813 + L1PA10 LINE L1 5654 6125 -43 * 4249 200 142 18 chr12 9191668 9192377 -135090112 + L1MCa LINE L1 1242 1861 -4703 1610 223 3 0 chr12 9192377 9192673 -135089816 - AluJo SINE Alu -15 297 1 4249 200 142 18 chr12 9192673 9193854 -135088635 + L1MCa LINE L1 1861 3371 -3193 2537 226 55 2 chr12 9193861 9194464 -135088025 + L1MCa LINE L1 4032 4666 -1898 189 0 0 0 chr12 9195170 9195191 -135087298 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 4996 124 42 129 chr12 9195931 9197160 -135085329 + MER52C LTR ERV1 59 1180 -98 855 275 42 4 chr12 9198169 9198411 -135084078 + MIR SINE MIR 4 246 -16 3466 148 69 69 chr12 9198491 9199086 -135083403 + MER6 DNA MER2_type 1 598 -267 4271 122 24 0 chr12 9199086 9199674 -135082815 + LTR26 LTR ERV1 2 603 0 3466 148 69 69 chr12 9199674 9199844 -135082645 + MER6 DNA MER2_type 597 766 -99 28 0 0 0 chr12 9199844 9199872 -135082617 + AT_rich Low_complexity Low_complexity 1 28 0 1083 172 29 25 chr12 9199960 9200198 -135082291 - L1MA4 LINE L1 -6 6294 6056 610 186 0 0 chr12 9200200 9200302 -135082187 + MER6 DNA MER2_type 763 864 -1 1456 188 8 0 chr12 9200305 9200539 -135081950 + MER46A DNA MER2_type 1 236 0 241 323 0 16 chr12 9200611 9200673 -135081816 - MIR SINE MIR -112 96 36 216 0 0 0 chr12 9202084 9202108 -135080381 + (TG)n Simple_repeat Simple_repeat 2 25 0 1266 174 4 34 chr12 9202136 9202372 -135080117 - AluJo SINE Alu -83 229 1 1994 140 3 3 chr12 9202749 9203042 -135079447 + L1PB4 LINE L1 5863 6155 -1 191 102 34 34 chr12 9203730 9203789 -135078700 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 257 270 29 29 chr12 9203941 9204078 -135078411 + (CATATA)n Simple_repeat Simple_repeat 3 139 0 23 54 0 0 chr12 9205171 9205208 -135077281 + AT_rich Low_complexity Low_complexity 1 37 0 1652 170 21 18 chr12 9205221 9205504 -135076985 - AluJb SINE Alu -28 284 1 2455 66 20 0 chr12 9205516 9205701 -135076788 - AluY SINE Alu -4 307 112 225 0 0 0 chr12 9205701 9205726 -135076763 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2455 66 20 0 chr12 9205726 9205841 -135076648 - AluY SINE Alu -199 112 1 205 242 30 45 chr12 9205936 9206002 -135076487 - MER5B DNA MER1_type -1 177 113 1180 128 6 11 chr12 9206002 9206182 -135076307 + AluSg/x SINE Alu 132 310 0 194 317 40 50 chr12 9206182 9206283 -135076206 - MER5A DNA MER1_type -52 137 38 876 189 109 144 chr12 9206631 9206944 -135075545 - AluJo SINE Alu 0 302 1 908 157 0 0 chr12 9207051 9207185 -135075304 + AluJo SINE Alu 1 134 -178 313 200 0 0 chr12 9207414 9207469 -135075020 + LTR29 LTR ERV1 1 55 -567 379 147 52 7 chr12 9208067 9208203 -135074286 + (TA)n Simple_repeat Simple_repeat 2 143 0 223 101 63 25 chr12 9208219 9208298 -135074191 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 679 167 0 0 chr12 9208592 9208688 -135073801 - AluJ/FLAM SINE Alu -215 97 2 224 429 34 0 chr12 9209246 9209393 -135073096 + L2 LINE L2 3116 3267 -5 440 235 220 0 chr12 9209674 9209806 -135072683 + MIR SINE MIR 17 177 -85 4765 179 139 142 chr12 9210691 9212189 -135070300 + MER52A LTR ERV1 30 1753 -2 22 0 0 0 chr12 9212511 9212533 -135069956 + AT_rich Low_complexity Low_complexity 1 22 0 202 312 52 26 chr12 9215776 9215853 -135066636 + L2 LINE L2 3169 3247 -25 300 266 29 92 chr12 9216223 9216345 -135066144 - MER5A DNA MER1_type 0 189 80 2339 71 10 7 chr12 9216345 9216639 -135065850 - AluSp SINE Alu -18 295 1 300 266 29 92 chr12 9216639 9216689 -135065800 - MER5A DNA MER1_type -109 80 28 24 32 0 0 chr12 9216935 9216966 -135065523 + AT_rich Low_complexity Low_complexity 1 31 0 2177 159 0 3 chr12 9216972 9217312 -135065177 - L1PA13 LINE L1 -19 6144 5806 2148 142 0 0 chr12 9219325 9219627 -135062862 + AluSx SINE Alu 1 302 -10 383 302 78 40 chr12 9220750 9221137 -135061352 + L1ME3A LINE L1 5488 5902 -268 229 295 116 27 chr12 9221296 9221408 -135061081 + L1ME3A LINE L1 5965 6086 -84 852 231 36 10 chr12 9221750 9221945 -135060544 - MIR SINE MIR -2 260 61 332 148 0 19 chr12 9221981 9222035 -135060454 + Tigger5 DNA MER2_type 2 54 -2269 * 368 174 14 14 chr12 9222008 9222077 -135060412 + Tigger5 DNA MER2_type 2255 2323 0 4743 75 2 0 chr12 9223593 9224170 -135058319 - L1PA8A LINE L1 -9 6122 5545 254 193 148 11 chr12 9224661 9224749 -135057740 + MIR SINE MIR 150 249 -13 21 57 0 0 chr12 9225514 9225549 -135056940 + AT_rich Low_complexity Low_complexity 1 35 0 341 313 90 43 chr12 9226646 9226902 -135055587 + L1ME LINE L1 5286 5553 -2489 5131 262 32 37 chr12 9226962 9228376 -135054113 + L1M3b LINE L1 11 1418 -4863 2075 21 4 0 chr12 9228373 9228610 -135053879 - L1P2 LINE L1 -435 5720 5483 * 2589 35 0 0 chr12 9228610 9228920 -135053569 + L1PA5 LINE L1 5842 6152 -2 10659 215 50 32 chr12 9228958 9231780 -135050709 + L1MA7 LINE L1 2267 5172 -2393 469 239 128 0 chr12 9231780 9231889 -135050600 + FLAM_A SINE Alu 1 123 -10 10659 215 50 32 chr12 9231889 9232764 -135049725 + L1MA7 LINE L1 5172 6030 -1535 2315 186 70 15 chr12 9232763 9233294 -135049195 + L1MA7 LINE L1 7141 7700 -10 * 230 304 45 9 chr12 9233503 9233615 -135048874 + L1ME LINE L1 5768 5883 -279 489 297 22 6 chr12 9233857 9234039 -135048450 + HAL1b LINE L1 606 790 -558 2253 114 0 0 chr12 9234978 9235277 -135047212 + AluSx SINE Alu 1 299 -13 22 56 0 0 chr12 9235333 9235369 -135047120 + AT_rich Low_complexity Low_complexity 1 36 0 1522 232 50 47 chr12 9237521 9238170 -135044319 + L1M3de LINE L1 154 1184 -5469 * 3725 159 39 23 chr12 9238156 9238899 -135043590 + L1MA9 LINE L1 5519 6273 -39 413 38 0 0 chr12 9239298 9239351 -135043138 + AluY SINE Alu 1 53 -257 298 67 0 150 chr12 9239351 9239451 -135043038 + Alu SINE Alu 230 320 0 732 173 35 126 chr12 9239809 9240064 -135042425 + MER63 DNA MER1_type 5 236 -825 332 219 0 0 chr12 9240108 9240172 -135042317 - MER63 DNA MER1_type -534 526 463 263 174 0 0 chr12 9240144 9240190 -135042299 + MER63 DNA MER1_type 244 289 -772 * 22 0 0 0 chr12 9240464 9240486 -135042003 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 9240631 9240653 -135041836 + AT_rich Low_complexity Low_complexity 1 22 0 2921 6 0 0 chr12 9241262 9241578 -135040911 - AluYb8 SINE Alu -2 316 1 407 240 25 58 chr12 9242342 9242463 -135040026 + L2 LINE L2 3195 3311 -2 25 65 0 0 chr12 9242643 9242689 -135039800 + AT_rich Low_complexity Low_complexity 1 46 0 2195 110 10 0 chr12 9243149 9243450 -135039039 - AluSx SINE Alu -8 304 1 180 0 0 0 chr12 9243950 9243970 -135038519 + (TA)n Simple_repeat Simple_repeat 1 20 0 351 291 49 21 chr12 9244731 9244895 -135037594 + MIR SINE MIR 36 206 -2 249 33 0 0 chr12 9245947 9245977 -135036512 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 761 169 0 0 chr12 9245980 9246098 -135036391 - FLAM_C SINE Alu -15 118 1 1606 64 3 158 chr12 9246269 9246580 -135035909 + L1PB1 LINE L1 5885 6147 -4 1782 156 3 3 chr12 9247746 9248035 -135034454 - AluJb SINE Alu -23 289 1 199 236 55 18 chr12 9248301 9248356 -135034133 + L2 LINE L2 3215 3271 -1 475 254 16 8 chr12 9248734 9248860 -135033629 - MIR SINE MIR -48 214 88 3605 154 16 2 chr12 9248947 9249557 -135032932 - L1MB2 LINE L1 -21 6150 5532 658 281 45 23 chr12 9249978 9250199 -135032290 - L2 LINE L2 -4 3309 3084 1075 157 0 5 chr12 9252400 9252591 -135029898 - L1MA4A LINE L1 -14 6289 6100 208 77 51 0 chr12 9253472 9253511 -135028978 + A-rich Low_complexity Low_complexity 1 41 0 2312 71 0 3 chr12 9253619 9253945 -135028544 - AluY SINE Alu 0 325 1 866 83 15 8 chr12 9255927 9256060 -135026429 + L1MA2 LINE L1 6075 6208 -96 567 105 0 0 chr12 9256148 9256234 -135026255 + L1MA3 LINE L1 6220 6305 0 25 51 0 0 chr12 9256606 9256645 -135025844 + AT_rich Low_complexity Low_complexity 1 39 0 473 306 81 47 chr12 9256677 9256935 -135025554 - L2 LINE L2 -1 3312 3046 * 757 312 80 13 chr12 9256914 9257215 -135025274 - L2 LINE L2 -644 2670 2350 207 100 0 0 chr12 9259477 9259507 -135022982 + (CATA)n Simple_repeat Simple_repeat 2 31 0 1604 225 73 90 chr12 9259807 9260833 -135021656 - Charlie2 DNA MER1_type -2 2860 1852 653 277 142 12 chr12 9260832 9261085 -135021404 - Charlie2 DNA MER1_type -2458 324 39 * 219 167 0 0 chr12 9262179 9262221 -135020268 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 264 374 41 0 chr12 9262227 9262374 -135020115 - L2 LINE L2 0 3313 3161 374 389 0 19 chr12 9262489 9262651 -135019838 - L2 LINE L2 -181 3091 2933 267 338 76 59 chr12 9262762 9263220 -135019269 - L2 LINE L2 -582 2732 2267 1128 173 54 29 chr12 9263223 9263501 -135018988 - MER33 DNA MER1_type 0 324 40 372 277 72 12 chr12 9263518 9263682 -135018807 - MER112 DNA MER1_type -7 253 80 1090 300 76 17 chr12 9263682 9264158 -135018331 + MLT1J LTR MaLR 1 504 -7 274 340 88 26 chr12 9264335 9264641 -135017848 - L2 LINE L2 -1053 2261 1937 277 248 32 61 chr12 9265448 9265579 -135016910 + MIR SINE MIR 39 176 -79 288 0 0 0 chr12 9266372 9266404 -135016085 + (TG)n Simple_repeat Simple_repeat 2 33 0 1696 188 0 17 chr12 9266405 9266703 -135015786 - AluJo SINE Alu -17 295 3 2056 101 0 0 chr12 9266812 9267089 -135015400 + AluSc SINE Alu 33 309 0 644 212 117 9 chr12 9268193 9268424 -135014065 - Charlie2a DNA MER1_type -1393 1469 1214 247 230 188 5 chr12 9268463 9268676 -135013813 - Charlie2a DNA MER1_type -1731 1131 880 2978 153 60 6 chr12 9268685 9269201 -135013288 - MER44D DNA MER2_type -1 604 6 474 208 14 32 chr12 9269376 9269481 -135013008 + L1MC5 LINE L1 6774 6879 -1163 1776 71 8 0 chr12 9269481 9269719 -135012770 - MER75B DNA T2_type 0 243 4 474 208 14 32 chr12 9269719 9269754 -135012735 + L1MC5 LINE L1 6879 6987 -1055 5270 130 125 62 chr12 9269758 9270950 -135011539 + MER52C LTR ERV1 1 1267 -11 292 197 79 0 chr12 9271064 9271140 -135011349 - L1MA8 LINE L1 -5 6286 6205 2216 102 0 0 chr12 9271246 9271552 -135010937 - AluSg SINE Alu 0 306 1 188 88 59 0 chr12 9274565 9274599 -135007890 + CT-rich Low_complexity Low_complexity 3 38 0 22 0 0 0 chr12 9274739 9274761 -135007728 + AT_rich Low_complexity Low_complexity 1 22 0 1967 64 98 4 chr12 9275099 9275365 -135007124 - AluY SINE Alu -18 293 3 4398 193 37 15 chr12 9275367 9276808 -135005681 - L1MB2 LINE L1 -47 6124 4645 21 0 0 0 chr12 9276861 9276882 -135005607 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 9276931 9276967 -135005522 + AT_rich Low_complexity Low_complexity 1 36 0 460 217 83 50 chr12 9277094 9277214 -135005275 + L2 LINE L2 3189 3312 -1 207 208 21 10 chr12 9277225 9277321 -135005168 + (TA)n Simple_repeat Simple_repeat 2 98 0 343 305 86 94 chr12 9277474 9277835 -135004654 + MLT1L LTR MaLR 154 521 0 323 348 136 24 chr12 9277935 9278222 -135004267 - L2 LINE L2 -462 2852 2534 279 253 101 0 chr12 9278389 9278468 -135004021 - MER104 DNA Tc2 -88 92 6 293 311 90 0 chr12 9278481 9278603 -135003886 - MIR SINE MIR -6 256 124 268 290 21 21 chr12 9278667 9278760 -135003729 - L2 LINE L2 -965 2349 2257 555 335 133 31 chr12 9278868 9279319 -135003170 - L2 LINE L2 0 3313 2817 321 379 109 11 chr12 9279298 9279583 -135002906 - L2 LINE L2 -1047 2267 1955 * 1858 158 32 6 chr12 9279928 9280276 -135002213 - L1MB1 LINE L1 -1 5991 5635 275 203 14 0 chr12 9282048 9282122 -135000367 + (TA)n Simple_repeat Simple_repeat 2 76 0 10901 208 41 9 chr12 9282129 9285269 -134997220 - L1MB1 LINE L1 -594 5398 2149 2922 65 29 2 chr12 9285271 9285686 -134996803 - LTR19A LTR ERV1 0 486 61 2372 88 0 0 chr12 9285686 9286015 -134996474 - LTR19A-int LTR ERV1 -132 5454 5126 * 3697 80 4 0 chr12 9286010 9286524 -134995965 - LTR19A-int LTR ERV1 -1205 4381 3866 22242 75 40 38 chr12 9286552 9290037 -134992452 - LTR19A-int LTR ERV1 -2091 3495 1 3620 63 25 0 chr12 9290037 9290511 -134991978 - LTR19A LTR ERV1 0 486 1 2635 258 78 51 chr12 9290511 9293197 -134989292 - L1MB1 LINE L1 -3819 2151 2 550 330 99 36 chr12 9293260 9293593 -134988896 + L2 LINE L2 225 578 -2736 736 142 154 0 chr12 9293642 9293811 -134988678 - L1MA8 LINE L1 -21 6270 6076 385 308 208 23 chr12 9293811 9294243 -134988246 + L2 LINE L2 568 1079 -2235 565 240 129 0 chr12 9294600 9294771 -134987718 - MER58A DNA MER1_type -3 221 29 1419 131 0 5 chr12 9295785 9296018 -134986471 - AluSg/x SINE Alu 0 317 86 278 317 58 19 chr12 9298001 9298105 -134984384 + MER5A DNA MER1_type 36 143 -46 320 242 61 0 chr12 9298173 9298272 -134984217 + L1M4 LINE L1 2375 2479 -3667 585 245 37 18 chr12 9299697 9299860 -134982629 + MER20 DNA MER1_type 54 219 0 279 54 0 0 chr12 9301000 9301037 -134981452 + (TTG)n Simple_repeat Simple_repeat 3 39 0 239 139 0 0 chr12 9301523 9301559 -134980930 + U2 snRNA snRNA 1 36 -152 213 39 0 0 chr12 9302421 9302447 -134980042 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1578 87 48 0 chr12 9302458 9302687 -134979802 - L1PA10 LINE L1 -11 6157 5918 1605 174 14 18 chr12 9303493 9303774 -134978715 - AluJo SINE Alu -32 280 1 276 100 0 0 chr12 9304254 9304294 -134978195 + (T)n Simple_repeat Simple_repeat 1 40 0 389 296 44 7 chr12 9304797 9304932 -134977557 + MIR SINE MIR 59 198 -64 2182 112 43 125 chr12 9304933 9305396 -134977093 + MSTC LTR MaLR 4 428 0 2402 39 0 4 chr12 9306171 9306451 -134976038 + AluY SINE Alu 20 298 -13 252 269 70 58 chr12 9306680 9306864 -134975625 + MIR SINE MIR 1 262 0 1917 132 14 0 chr12 9307492 9307781 -134974708 - AluSx SINE Alu -19 293 1 228 258 191 11 chr12 9307883 9307972 -134974517 + MIR SINE MIR 37 141 -67 1892 89 8 0 chr12 9308285 9308544 -134973945 - L1PA11 LINE L1 -3 6171 5911 1978 65 43 47 chr12 9308713 9308989 -134973500 + AluY SINE Alu 24 298 -13 22 0 0 0 chr12 9310279 9310301 -134972188 + AT_rich Low_complexity Low_complexity 1 22 0 721 195 58 49 chr12 9312897 9313102 -134969387 - L1PA12 LINE L1 -7233 348 142 280 326 23 0 chr12 9313669 9313755 -134968734 - MIR3 SINE MIR -28 180 93 260 358 8 25 chr12 9314754 9314874 -134967615 + MIR3 SINE MIR 55 172 -36 22563 178 20 12 chr12 9315528 9321995 -134960494 + L1PA11 LINE L1 12 7610 -2 279 244 103 114 chr12 9322217 9322561 -134959928 + MLT1F-int LTR MaLR 1023 1731 -4 2078 211 65 36 chr12 9322566 9323093 -134959396 + MLT1F LTR MaLR 1 542 0 4148 168 19 1 chr12 9323634 9324353 -134958136 + MER44D DNA MER2_type 2 605 0 249 324 67 9 chr12 9324836 9324941 -134957548 + L2 LINE L2 3203 3313 0 243 277 151 54 chr12 9325440 9325606 -134956883 + MIR SINE MIR 54 235 -27 198 0 0 0 chr12 9325643 9325665 -134956824 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 718 0 0 0 chr12 9325665 9325745 -134956744 - L1PA2 LINE L1 -12 6143 6064 5485 33 0 0 chr12 9325745 9326438 -134956051 + L1P LINE L1 4567 5259 -887 263 263 44 13 chr12 9327350 9327448 -134955041 + MIR SINE MIR 56 142 -66 757 272 16 4 chr12 9328682 9328928 -134953561 + L1MA9 LINE L1 6025 6273 -39 1774 146 46 7 chr12 9328928 9329208 -134953281 - AluJo SINE Alu -21 291 1 10690 204 73 22 chr12 9329646 9331319 -134951170 + L1PA13 LINE L1 828 2414 -4383 2288 114 7 0 chr12 9331319 9331625 -134950864 - AluSc SINE Alu -1 308 1 10690 204 73 22 chr12 9331625 9332120 -134950369 + L1PA13 LINE L1 2414 2882 -3915 3343 41 5 0 chr12 9332120 9332530 -134949959 + L1PA7 LINE L1 5741 6153 -1 10690 204 73 22 chr12 9332530 9334470 -134948019 + L1PA13 LINE L1 2882 5217 -1580 5376 108 17 61 chr12 9334470 9336223 -134946266 + L1PA12 LINE L1 4441 6161 -7 22 0 0 0 chr12 9336229 9336251 -134946238 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr12 9336905 9336941 -134945548 + AT_rich Low_complexity Low_complexity 1 36 0 34 0 0 0 chr12 9337003 9337037 -134945452 + AT_rich Low_complexity Low_complexity 1 34 0 2619 36 0 0 chr12 9339982 9340283 -134942206 - AluY SINE Alu -10 301 1 367 207 200 41 chr12 9340382 9340527 -134941962 + MIR SINE MIR 24 191 -71 699 191 40 10 chr12 9340549 9340748 -134941741 + L1MA4 LINE L1 6085 6289 -11 28 0 0 0 chr12 9340748 9340776 -134941713 + AT_rich Low_complexity Low_complexity 1 28 0 289 122 0 92 chr12 9340884 9340982 -134941507 + (TTCCC)n Simple_repeat Simple_repeat 3 91 0 1504 169 4 40 chr12 9340995 9341273 -134941216 - AluJo SINE Alu -44 268 1 42 52 0 31 chr12 9341304 9341400 -134941089 + AT_rich Low_complexity Low_complexity 1 93 0 225 117 67 0 chr12 9342864 9342924 -134939565 + (TA)n Simple_repeat Simple_repeat 2 65 0 26 0 0 0 chr12 9342931 9342957 -134939532 + AT_rich Low_complexity Low_complexity 1 26 0 228 109 31 16 chr12 9342970 9343034 -134939455 + (TATAA)n Simple_repeat Simple_repeat 2 66 0 388 92 46 58 chr12 9343075 9343249 -134939240 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 391 105 89 0 chr12 9343249 9343513 -134938976 + (TA)n Simple_repeat Simple_repeat 1 287 0 1398 183 49 28 chr12 9343590 9343874 -134938615 + AluJo SINE Alu 1 290 -22 23 0 0 0 chr12 9347442 9347465 -134935024 + AT_rich Low_complexity Low_complexity 1 23 0 2560 53 0 0 chr12 9348857 9349160 -134933329 - AluY SINE Alu -8 303 1 1418 172 40 30 chr12 9350333 9350630 -134931859 + AluJo SINE Alu 1 300 -12 299 307 87 0 chr12 9350898 9351025 -134931464 - MIR SINE MIR -15 247 110 36 40 0 0 chr12 9351766 9351816 -134930673 + AT_rich Low_complexity Low_complexity 1 50 0 349 336 17 8 chr12 9354578 9354697 -134927792 - L2 LINE L2 -20 3293 3174 21 71 0 0 chr12 9354921 9354963 -134927526 + AT_rich Low_complexity Low_complexity 1 42 0 228 182 23 0 chr12 9355092 9355136 -134927353 + U7 snRNA snRNA 11 55 -8 513 315 75 29 chr12 9355416 9355850 -134926639 - L1ME LINE L1 -298 5823 5365 401 324 60 29 chr12 9356403 9356684 -134925805 - L1ME LINE L1 -355 5766 5477 2797 259 66 20 chr12 9356691 9357952 -134924537 - L1M3c LINE L1 -4575 1390 305 4217 202 11 29 chr12 9358321 9359992 -134922497 - L1MB7 LINE L1 -29 6155 4516 377 196 20 85 chr12 9360427 9360586 -134921903 - L1ME LINE L1 -810 5336 5188 385 226 46 109 chr12 9360779 9361247 -134921242 + MER31-int LTR ERV1 3637 3764 -1172 5594 228 18 1 chr12 9361320 9362055 -134920434 + L1PA15 LINE L1 2425 3195 -2951 189 0 0 0 chr12 9362055 9362076 -134920413 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 5594 228 18 1 chr12 9362076 9362681 -134919808 + L1PA15 LINE L1 3195 3788 -2358 2611 231 25 6 chr12 9362674 9363227 -134919262 - L1 LINE L1 -890 5256 4688 * 260 49 49 0 chr12 9363227 9363268 -134919221 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2611 231 25 6 chr12 9363268 9363346 -134919143 - L1 LINE L1 -1458 4688 4613 3011 107 7 13 chr12 9363354 9363712 -134918777 + L1PB1 LINE L1 5695 6051 -100 2266 102 102 3 chr12 9363712 9364055 -134918434 + MER51B LTR ERV1 1 377 0 3011 107 7 13 chr12 9364055 9364154 -134918335 + L1PB1 LINE L1 6051 6149 -2 2546 189 28 6 chr12 9364177 9364674 -134917815 + L1PA15 LINE L1 3775 4282 -1864 5735 120 32 3 chr12 9364679 9366131 -134916358 + L1PA15 LINE L1 4679 6161 -4 668 229 127 82 chr12 9366156 9366597 -134915892 + LTR37B LTR ERV1 7 467 -1 1804 119 60 0 chr12 9366631 9366939 -134915550 + AluSq SINE Alu 1 324 0 2431 57 0 10 chr12 9367595 9367895 -134914594 - AluY SINE Alu -14 297 1 644 203 0 38 chr12 9368086 9368219 -134914270 - FLAM_A SINE Alu -5 128 1 2274 128 0 0 chr12 9368262 9368568 -134913921 - AluSc SINE Alu -3 306 1 1659 194 67 58 chr12 9368720 9369183 -134913306 - MLT1C LTR MaLR 0 467 1 5596 49 11 7 chr12 9369678 9370390 -134912099 - L1PA6 LINE L1 0 6154 5440 11574 127 22 22 chr12 9370427 9372304 -134910185 - L1P LINE L1 -4205 1941 65 2493 141 35 2 chr12 9372755 9373158 -134909331 - MSTA LTR MaLR 0 428 13 287 304 44 59 chr12 9373214 9373487 -134909002 + L1M4 LINE L1 4731 4999 -1147 1141 256 68 9 chr12 9373536 9373860 -134908629 - L1MD2 LINE L1 -294 6065 5723 467 131 75 0 chr12 9373865 9373972 -134908517 - L1MDa LINE L1 -4076 2464 2350 189 0 0 0 chr12 9375720 9375741 -134906748 + (T)n Simple_repeat Simple_repeat 1 21 0 2299 99 0 13 chr12 9376147 9376461 -134906028 - AluSg SINE Alu 0 310 1 202 275 0 29 chr12 9376773 9376842 -134905647 + (TA)n Simple_repeat Simple_repeat 1 67 0 1732 170 52 0 chr12 9382705 9382993 -134899496 - AluSx SINE Alu -9 303 1 2116 285 81 19 chr12 9383194 9384302 -134898187 - L2 LINE L2 -3 3310 2134 300 266 75 12 chr12 9384436 9384609 -134897880 - MER113 DNA MER1_type? -335 186 3 210 71 0 0 chr12 9384815 9384843 -134897646 + (T)n Simple_repeat Simple_repeat 1 28 0 278 308 0 0 chr12 9385622 9385731 -134896758 + CT-rich Low_complexity Low_complexity 1 109 0 234 105 0 0 chr12 9387793 9387831 -134894658 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 217 132 19 19 chr12 9387829 9387882 -134894607 + CT-rich Low_complexity Low_complexity 1 53 0 * 318 35 0 86 chr12 9388510 9388568 -134893921 + L1PA16 LINE L1 6112 6164 -2 26 98 0 0 chr12 9389185 9389267 -134893222 + AT_rich Low_complexity Low_complexity 1 82 0 282 259 38 84 chr12 9389837 9389968 -134892521 - MIR SINE MIR -71 191 67 265 167 361 0 chr12 9390442 9390514 -134891975 + MLT1J2 LTR MaLR 70 167 -283 300 262 54 102 chr12 9390540 9390761 -134891728 + MLT1J2 LTR MaLR 237 450 0 2453 58 0 16 chr12 9392313 9392644 -134889845 - AluY SINE Alu 0 311 1 217 397 66 0 chr12 9393375 9393511 -134888978 - MIR3 SINE MIR -30 178 34 473 334 113 38 chr12 9393864 9394528 -134887961 + L2 LINE L2 2589 3313 0 190 367 0 0 chr12 9394985 9395045 -134887444 - L2 LINE L2 0 3313 3254 12243 150 20 2 chr12 9395054 9398875 -134883614 + L1PA11 LINE L1 2205 6174 0 2278 60 0 0 chr12 9403736 9404065 -134878424 + AluY SINE Alu 1 329 0 2018 259 99 8 chr12 9404117 9405013 -134877476 + L1M4 LINE L1 2617 3594 -2552 744 230 7 109 chr12 9405003 9405277 -134877212 + MLT1D-int LTR MaLR 419 664 -707 * 775 313 13 5 chr12 9405337 9405561 -134876928 + MLT1D-int LTR MaLR 661 886 -485 354 310 26 9 chr12 9405668 9405781 -134876708 + MLT1D-int LTR MaLR 961 1075 -296 * 381 240 57 91 chr12 9405772 9405947 -134876542 + MLT1D-int LTR MaLR 1188 1356 -15 1927 167 117 65 chr12 9405960 9406440 -134876049 + MLT1D LTR MaLR 1 505 0 34 55 0 0 chr12 9406998 9407053 -134875436 + AT_rich Low_complexity Low_complexity 1 55 0 472 273 77 67 chr12 9407201 9407410 -134875079 - MIR SINE MIR -3 259 49 187 203 27 0 chr12 9408303 9408377 -134874112 + (TA)n Simple_repeat Simple_repeat 1 76 0 2272 64 3 3 chr12 9408793 9409100 -134873389 - AluY SINE Alu 0 307 1 210 204 91 0 chr12 9409448 9409492 -134872997 + L2 LINE L2 584 631 -2683 881 175 92 0 chr12 9409599 9409816 -134872673 - L1MA7 LINE L1 -2 6289 6053 526 327 112 49 chr12 9409823 9410316 -134872173 + L2 LINE L2 2307 2830 -484 1044 219 134 42 chr12 9410543 9411133 -134871356 + MER69 DNA AcHobo 1845 2488 -38 199 284 181 39 chr12 9411794 9412026 -134870463 + L2 LINE L2 1901 2165 -1149 2631 20 0 7 chr12 9412078 9412382 -134870107 - AluY SINE Alu -9 302 1 2330 79 10 0 chr12 9412532 9412824 -134869665 + AluSp SINE Alu 1 295 -18 191 363 66 0 chr12 9412867 9412958 -134869531 + L2 LINE L2 2398 2494 -820 222 330 97 0 chr12 9413396 9413499 -134868990 + L2 LINE L2 3201 3313 0 2027 145 3 7 chr12 9414075 9414385 -134868104 - AluJo SINE Alu -3 309 1 35 71 0 0 chr12 9414529 9414599 -134867890 + AT_rich Low_complexity Low_complexity 1 70 0 363 348 75 40 chr12 9414674 9414793 -134867696 + L2 LINE L2 663 776 -2538 2749 165 12 12 chr12 9414793 9415279 -134867210 + MER66B LTR ERV1 1 486 0 363 348 75 40 chr12 9415279 9415808 -134866681 + L2 LINE L2 776 1334 -1980 482 296 16 53 chr12 9416567 9416756 -134865733 + MER5A DNA MER1_type 8 189 0 239 349 12 0 chr12 9416815 9416901 -134865588 + MIR SINE MIR 164 250 -12 1473 321 43 22 chr12 9417403 9417895 -134864594 + MLT2E LTR ERVL 99 600 -28 600 268 38 6 chr12 9418273 9418430 -134864059 + MIR SINE MIR 53 214 -48 30 0 0 0 chr12 9420378 9420408 -134862081 + AT_rich Low_complexity Low_complexity 1 30 0 1858 158 0 3 chr12 9420436 9420727 -134861762 + AluJb SINE Alu 1 290 -22 230 323 62 0 chr12 9420807 9420924 -134861565 + MIR SINE MIR 67 189 -69 368 54 0 36 chr12 9421825 9421881 -134860608 + (TTTTC)n Simple_repeat Simple_repeat 3 56 0 29 28 0 0 chr12 9424395 9424431 -134858058 + AT_rich Low_complexity Low_complexity 1 36 0 2696 247 104 40 chr12 9424514 9425823 -134856666 - Charlie2a DNA MER1_type -4 2858 1466 993 269 51 31 chr12 9425843 9426233 -134856256 - Charlie2b DNA MER1_type -2090 692 295 1138 266 105 20 chr12 9427398 9428049 -134854440 + L1ME3A LINE L1 5149 5894 -276 602 322 74 49 chr12 9428226 9428713 -134853776 + L2 LINE L2 2815 3313 0 297 0 0 0 chr12 9428975 9429008 -134853481 + (CA)n Simple_repeat Simple_repeat 2 34 0 575 171 9 18 chr12 9430159 9430270 -134852219 - MLT1A2 LTR MaLR 0 374 265 461 243 65 9 chr12 9430742 9430897 -134851592 + MIR SINE MIR 30 191 -66 457 237 173 109 chr12 9431019 9431377 -134851112 - L2 LINE L2 -2 3311 2931 401 245 169 27 chr12 9431853 9432037 -134850452 + MIR SINE MIR 48 257 -5 2393 54 3 22 chr12 9432887 9433203 -134849286 + AluY SINE Alu 1 310 -1 2388 76 0 0 chr12 9434027 9434331 -134848158 - AluY SINE Alu -2 309 6 356 210 38 140 chr12 9434464 9434621 -134847868 - HAL1 LINE L1 -379 2128 1988 945 243 59 53 chr12 9434668 9435005 -134847484 - MLT1A2 LTR MaLR 0 374 36 500 111 100 22 chr12 9435005 9435095 -134847394 - FLAM_A SINE Alu -16 126 30 234 241 19 0 chr12 9435309 9435363 -134847126 - MLT1A2 LTR MaLR -402 55 1 299 320 0 0 chr12 9435377 9435452 -134847037 - HAL1 LINE L1 -1631 876 802 437 312 203 34 chr12 9435482 9436107 -134846382 - HAL1 LINE L1 -1767 740 10 1555 188 11 11 chr12 9436107 9436394 -134846095 - AluJo SINE Alu -25 287 1 23 0 0 0 chr12 9437557 9437580 -134844909 + AT_rich Low_complexity Low_complexity 1 23 0 287 322 81 72 chr12 9437617 9437853 -134844636 - MIR SINE MIR -23 239 2 1461 219 22 70 chr12 9438054 9438456 -134844033 - MLT1B LTR MaLR 0 390 8 694 180 0 23 chr12 9438510 9438638 -134843851 + FLAM_A SINE Alu 8 132 -10 267 54 0 0 chr12 9438667 9438704 -134843785 + (A)n Simple_repeat Simple_repeat 1 37 0 283 379 19 6 chr12 9440701 9440862 -134841627 - MIR SINE MIR -79 183 21 207 290 16 0 chr12 9441094 9441156 -134841333 - L2 LINE L2 -24 3248 3186 314 314 167 40 chr12 9441426 9441779 -134840710 + L2 LINE L2 2873 3270 -2 520 367 86 3 chr12 9442631 9442958 -134839531 - L2 LINE L2 -5 3267 2914 185 200 0 0 chr12 9445951 9445986 -134836503 - MIR SINE MIR -75 133 99 456 254 92 8 chr12 9446139 9446269 -134836220 - MIR SINE MIR -75 187 47 195 292 56 34 chr12 9447233 9447322 -134835167 - MIR SINE MIR -114 148 58 2007 107 6 28 chr12 9448331 9448649 -134833840 + AluSx SINE Alu 1 311 -1 281 256 47 110 chr12 9452136 9452234 -134830255 + MIR SINE MIR 46 128 -134 2259 76 3 3 chr12 9452234 9452537 -134829952 + AluY SINE Alu 1 303 -8 281 256 47 110 chr12 9452537 9452629 -134829860 + MIR SINE MIR 128 224 -38 685 267 174 20 chr12 9453543 9453909 -134828580 - L1MC4 LINE L1 -807 7001 6534 2019 116 30 0 chr12 9453909 9454211 -134828278 - AluSx SINE Alu -1 311 1 685 267 174 20 chr12 9454211 9454354 -134828135 - L1MC4 LINE L1 -1274 6534 6414 460 282 33 14 chr12 9454474 9454687 -134827802 - L1MC4a LINE L1 -1538 6270 6054 556 288 161 8 chr12 9454922 9455160 -134827329 - L1MC4a LINE L1 -473 5648 5419 231 312 0 13 chr12 9455160 9455237 -134827252 - MER5B DNA MER1_type -102 76 1 226 214 0 0 chr12 9461120 9461176 -134821313 + C-rich Low_complexity Low_complexity 5 60 0 2325 77 0 3 chr12 9461882 9462181 -134820308 + AluY SINE Alu 1 298 -13 208 280 0 0 chr12 9462256 9462306 -134820183 + GA-rich Low_complexity Low_complexity 1 50 0 312 303 200 5 chr12 9462998 9463183 -134819306 + L2 LINE L2 2870 3090 -182 517 228 181 0 chr12 9463222 9463371 -134819118 + MIR SINE MIR 25 200 -62 369 360 41 0 chr12 9463472 9463619 -134818870 + L2 LINE L2 3119 3271 -1 200 278 0 37 chr12 9465308 9465362 -134817127 + MIR SINE MIR 103 154 -108 1260 171 72 48 chr12 9465780 9466073 -134816416 + AluJb SINE Alu 5 304 -8 1145 171 116 3 chr12 9466257 9466484 -134816005 + MER33 DNA MER1_type 1 305 -2319 2143 109 7 0 chr12 9466484 9466787 -134815702 - AluSx SINE Alu -7 305 1 1145 171 116 3 chr12 9466787 9466843 -134815646 + MER33 DNA MER1_type 305 353 -10 291 389 72 23 chr12 9467099 9467320 -134815169 - MIR SINE MIR -30 232 1 306 0 0 0 chr12 9467432 9467466 -134815023 + (TA)n Simple_repeat Simple_repeat 1 34 0 208 265 82 20 chr12 9467528 9467626 -134814863 - MIR SINE MIR -55 207 104 4093 91 33 6 chr12 9468508 9469057 -134813432 - LTR6A LTR ERV1 0 564 1 1044 212 24 9 chr12 9469057 9469269 -134813220 - HERVS71 LTR ERV1 -105 8873 8659 * 12706 154 8 10 chr12 9469260 9471243 -134811246 - HERVS71 LTR ERV1 -2023 6955 4977 12468 179 21 10 chr12 9471236 9473371 -134809118 - HERVS71 LTR ERV1 -5477 3501 1344 * 805 174 5 97 chr12 9473384 9473591 -134808898 - MER53 DNA DNA 0 189 2 635 466 0 6 chr12 9473697 9473875 -134808614 + polypyrimidine Low_complexity Low_complexity 2 178 0 692 260 103 55 chr12 9473899 9474474 -134808015 - L2 LINE L2 -38 3275 2676 220 298 96 10 chr12 9474477 9474581 -134807908 + L2 LINE L2 3186 3298 -15 224 77 26 0 chr12 9474584 9474623 -134807866 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 266 305 232 0 chr12 9474792 9474956 -134807533 + L3 LINE CR1 560 761 -816 449 297 40 6 chr12 9475132 9475307 -134807182 - MIR SINE MIR -73 189 9 2881 117 9 14 chr12 9475361 9475804 -134806685 - L1PA13 LINE L1 0 6163 5723 180 0 0 0 chr12 9475812 9475832 -134806657 + (CATAG)n Simple_repeat Simple_repeat 4 23 0 357 332 64 52 chr12 9475843 9476186 -134806303 - L1ME3A LINE L1 -36 6134 5788 990 286 82 23 chr12 9476392 9476924 -134805565 - L1ME3A LINE L1 -465 5705 5140 842 222 156 40 chr12 9477644 9477946 -134804543 - MLT1E LTR MaLR -36 557 221 309 26 0 0 chr12 9477969 9478007 -134804482 + (GA)n Simple_repeat Simple_repeat 1 38 0 748 196 65 7 chr12 9478097 9478250 -134804239 + MLT1A1 LTR MaLR 1 162 -203 1468 219 37 13 chr12 9479020 9479395 -134803094 - MLT1B LTR MaLR -6 384 1 256 335 74 48 chr12 9479413 9479643 -134802846 - L1ME LINE L1 -469 5652 5417 279 336 46 15 chr12 9480187 9480318 -134802171 - L2 LINE L2 -1 3271 3137 4547 60 19 11 chr12 9481984 9483010 -134799479 - MER11A LTR ERVK 0 1266 1 4082 213 63 69 chr12 9483246 9483542 -134798947 - MER89-int LTR ERV1 -5142 1659 1363 1987 206 0 8 chr12 9483542 9483910 -134798579 - MLT1A1 LTR MaLR 0 365 1 4082 213 63 69 chr12 9483910 9484351 -134798138 - MER89-int LTR ERV1 -5438 1363 921 1323 219 13 43 chr12 9484351 9484518 -134797971 - AluJo SINE Alu -7 295 139 405 0 0 0 chr12 9484518 9484563 -134797926 + (TA)n Simple_repeat Simple_repeat 1 45 0 1323 219 13 43 chr12 9484563 9484697 -134797792 - AluJo SINE Alu -163 139 3 4082 213 63 69 chr12 9484697 9485335 -134797154 - MER89-int LTR ERV1 -5880 921 291 253 306 74 25 chr12 9486537 9486658 -134795831 + L2 LINE L2 3138 3264 -8 323 316 140 12 chr12 9486831 9487002 -134795487 + MIR SINE MIR 46 238 -24 348 24 0 0 chr12 9487239 9487280 -134795209 + (TG)n Simple_repeat Simple_repeat 2 42 0 1998 136 0 0 chr12 9487304 9487599 -134794890 - AluSx SINE Alu -17 295 1 203 390 39 0 chr12 9488521 9488598 -134793891 - L2 LINE L2 -36 3277 3198 214 345 109 8 chr12 9488967 9489086 -134793403 + L2 LINE L2 3169 3299 -14 426 283 14 57 chr12 9489671 9489883 -134792606 - L1PBb LINE L1 -5234 970 768 415 181 14 0 chr12 9489993 9490065 -134792424 + MER21B LTR ERV1 1 73 -790 234 0 0 0 chr12 9490801 9490827 -134791662 + (A)n Simple_repeat Simple_repeat 1 26 0 803 161 0 8 chr12 9491307 9491431 -134791058 - FLAM_C SINE Alu -19 124 2 1750 188 35 60 chr12 9491980 9492447 -134790042 + LTR56 LTR ERV1 9 437 0 212 225 0 0 chr12 9493038 9493078 -134789411 + L2 LINE L2 3273 3312 -1 552 294 22 13 chr12 9493356 9493563 -134788926 + MIR SINE MIR 8 262 0 312 312 54 11 chr12 9493948 9494041 -134788448 + MIR3 SINE MIR 85 181 -27 22 56 0 0 chr12 9494547 9494583 -134787906 + AT_rich Low_complexity Low_complexity 1 36 0 1453 186 41 29 chr12 9494654 9495068 -134787421 - SVA Other Other -536 850 432 241 280 51 34 chr12 9496519 9496637 -134785852 + L1ME4a LINE L1 5964 6083 -38 1635 163 3 20 chr12 9496763 9497057 -134785432 + AluJo SINE Alu 4 292 -20 590 214 149 7 chr12 9497944 9498098 -134784391 + MLT1C LTR MaLR 292 467 0 220 365 47 16 chr12 9499067 9499259 -134783230 + MIR3 SINE MIR 4 201 -7 2980 137 41 30 chr12 9499884 9500423 -134782066 - LTR10A LTR ERV1 -64 545 1 14322 75 14 4 chr12 9500469 9501118 -134781371 - L1PA6 LINE L1 0 6154 5513 2346 70 0 3 chr12 9501118 9501419 -134781070 - AluY SINE Alu -11 300 1 14322 75 14 4 chr12 9501419 9505362 -134777127 - L1PA6 LINE L1 -641 5513 1442 1155 164 108 15 chr12 9506637 9506906 -134775583 - L1MB7 LINE L1 0 6184 5891 445 241 141 29 chr12 9506936 9507106 -134775383 + MER90 LTR ERV1 426 614 0 1395 203 10 17 chr12 9508287 9508618 -134773871 - AluJb SINE Alu 0 312 1 474 243 10 0 chr12 9508670 9508773 -134773716 - MIR SINE MIR -116 146 43 499 242 31 40 chr12 9508912 9509071 -134773418 - MIR3 SINE MIR -12 196 39 258 320 29 10 chr12 9509529 9509632 -134772857 + L2 LINE L2 2715 2819 -495 2306 179 94 28 chr12 9509743 9509808 -134772681 - MER101B LTR ERV1 -2 568 509 3233 92 38 5 chr12 9509808 9510253 -134772236 - LTR46 LTR ERV1 0 460 1 2306 179 94 28 chr12 9510253 9510718 -134771771 - MER101B LTR ERV1 -61 509 3 259 298 43 11 chr12 9510800 9510894 -134771595 + L2 LINE L2 3215 3311 -2 1766 182 43 52 chr12 9512413 9512872 -134769617 + LTR56 LTR ERV1 13 437 0 402 298 53 23 chr12 9513825 9513956 -134768533 + MIR SINE MIR 8 142 -120 225 349 70 12 chr12 9513960 9514046 -134768443 - MIR SINE MIR -152 110 20 426 336 118 22 chr12 9515350 9515579 -134766910 + MIR SINE MIR 12 262 0 505 294 36 50 chr12 9515771 9516108 -134766381 + L1ME4a LINE L1 5479 5810 -311 2869 171 0 6 chr12 9516603 9517106 -134765383 - L1PA13 LINE L1 0 6163 5664 304 235 128 39 chr12 9517111 9517213 -134765276 + L1ME4a LINE L1 6000 6110 -11 1113 280 73 22 chr12 9518016 9518470 -134764019 - L1ME3 LINE L1 -244 5918 5442 883 211 16 5 chr12 9518502 9518692 -134763797 - AluJo SINE Alu -1 311 120 346 262 26 84 chr12 9518692 9518817 -134763672 - L1ME3 LINE L1 -743 5403 5272 2299 61 7 0 chr12 9518817 9519111 -134763378 - AluY SINE Alu -1 310 15 346 262 26 84 chr12 9519111 9519293 -134763196 - L1ME3 LINE L1 -874 5272 5124 28 48 0 0 chr12 9519318 9519360 -134763129 + AT_rich Low_complexity Low_complexity 1 42 0 1616 264 55 28 chr12 9519495 9520185 -134762304 - L1ME3 LINE L1 -1120 5026 4318 575 139 0 0 chr12 9520199 9520300 -134762189 - L1MB3 LINE L1 -3 6180 6080 2691 258 53 32 chr12 9520325 9521189 -134761300 - L1ME1 LINE L1 -5 6161 5280 599 275 0 0 chr12 9521195 9521326 -134761163 + FLAM_A SINE Alu 1 131 -2 1944 222 68 0 chr12 9521349 9521773 -134760716 + MLT1D LTR MaLR 1 453 -52 208 203 85 17 chr12 9522696 9522755 -134759734 + L2 LINE L2 2991 3053 -219 207 263 138 25 chr12 9523203 9523283 -134759206 - L2 LINE L2 0 3272 3184 1340 216 88 10 chr12 9523589 9523895 -134758594 - MER2 DNA MER2_type -13 332 3 262 318 37 19 chr12 9524505 9524612 -134757877 - L2 LINE L2 -41 3231 3123 647 229 78 26 chr12 9526142 9526295 -134756194 + MER58B DNA MER1_type 181 341 0 187 268 134 27 chr12 9727383 9727495 -134554994 + MIR SINE MIR 25 148 -114 461 261 92 8 chr12 9728459 9728589 -134553900 + MIR SINE MIR 47 187 -75 543 330 107 25 chr12 9731857 9732184 -134550305 + L2 LINE L2 2914 3267 -5 291 303 173 45 chr12 9733036 9733389 -134549100 - L2 LINE L2 -2 3270 2873 234 274 16 0 chr12 9733659 9733721 -134548768 + L2 LINE L2 3186 3248 -24 297 317 50 37 chr12 9733953 9734114 -134548375 + MIR SINE MIR 21 183 -79 249 57 0 0 chr12 9736111 9736146 -134546343 + (T)n Simple_repeat Simple_repeat 1 35 0 686 180 0 23 chr12 9736175 9736303 -134546186 - FLAM_A SINE Alu -10 132 8 1370 219 22 70 chr12 9736357 9736759 -134545730 + MLT1B LTR MaLR 8 390 0 313 284 87 83 chr12 9736978 9737196 -134545293 + MIR SINE MIR 21 239 -23 23 0 0 0 chr12 9737233 9737256 -134545233 + AT_rich Low_complexity Low_complexity 1 23 0 180 264 0 83 chr12 9737774 9737846 -134544643 - L2 LINE L2 -12 3260 3195 1648 188 11 11 chr12 9738419 9738706 -134543783 + AluJo SINE Alu 1 287 -25 792 298 206 37 chr12 9738706 9739331 -134543158 + HAL1 LINE L1 10 740 -1767 270 320 0 0 chr12 9739361 9739436 -134543053 + HAL1 LINE L1 802 876 -1631 478 122 100 22 chr12 9739718 9739808 -134542681 + FLAM_A SINE Alu 30 126 -16 840 252 59 53 chr12 9739808 9740145 -134542344 + MLT1A2 LTR MaLR 36 374 0 347 208 109 126 chr12 9740166 9740349 -134542140 + HAL1 LINE L1 1949 2128 -379 2109 81 4 0 chr12 9740482 9740743 -134541746 + AluY SINE Alu 1 262 -49 2528 58 3 10 chr12 9741575 9741887 -134540602 - AluY SINE Alu -1 310 1 475 231 202 35 chr12 9742735 9742938 -134539551 - MIR SINE MIR -5 257 21 517 237 173 109 chr12 9743395 9743753 -134538736 + L2 LINE L2 2931 3311 -2 495 236 65 9 chr12 9743875 9744030 -134538459 - MIR SINE MIR -66 142 30 542 168 9 19 chr12 9744506 9744613 -134537876 + MLT1A2 LTR MaLR 269 374 0 296 260 57 73 chr12 9746063 9746186 -134536303 + MIR3 SINE MIR 58 178 -30 348 158 13 26 chr12 9746510 9746586 -134535903 + L1M LINE L1 5315 5389 -785 7223 133 143 40 chr12 9746786 9748325 -134534164 - pTR5 LTR ERV1 0 2438 742 269 351 94 25 chr12 9748325 9748601 -134533888 - L2 LINE L2 -466 2848 2554 2175 42 0 27 chr12 9749074 9749334 -134533155 + AluY SINE Alu 51 303 -8 639 291 22 43 chr12 9749334 9749564 -134532925 + MIR SINE MIR 38 262 0 776 250 27 27 chr12 9749630 9749850 -134532639 - MSTB1 LTR MaLR -212 220 1 4227 168 44 58 chr12 9750286 9750888 -134531601 + L1MB2 LINE L1 4929 5538 -633 324 0 0 0 chr12 9750888 9750924 -134531565 + (CA)n Simple_repeat Simple_repeat 1 36 0 1856 179 0 13 chr12 9750924 9751232 -134531257 + AluJo SINE Alu 2 305 -7 4227 168 44 58 chr12 9751232 9751610 -134530879 + L1MB2 LINE L1 5537 5872 -299 1929 172 52 22 chr12 9751610 9751644 -134530845 - MLT2D LTR ERVL 0 414 382 291 28 0 0 chr12 9751644 9751680 -134530809 + (TG)n Simple_repeat Simple_repeat 2 37 0 1929 172 52 22 chr12 9751680 9752047 -134530442 - MLT2D LTR ERVL -32 382 1 4227 168 44 58 chr12 9752047 9752343 -134530146 + L1MB2 LINE L1 5872 6171 0 4658 145 72 8 chr12 9753013 9753325 -134529164 + Tigger3b DNA MER2_type 1 292 -2736 1537 210 13 23 chr12 9753325 9753625 -134528864 - AluJo SINE Alu -15 297 1 4658 145 72 8 chr12 9753625 9754183 -134528306 + Tigger3b DNA MER2_type 292 927 -304 3567 171 73 82 chr12 9754190 9755124 -134527365 - MER21A LTR ERV1 -6 925 1 756 182 45 0 chr12 9755124 9755277 -134527212 + Tigger3b DNA MER2_type 923 1082 -149 1293 160 30 122 chr12 9755279 9755777 -134526712 - MER4A LTR ERV1 0 465 157 1408 334 49 29 chr12 9755795 9756106 -134526383 - MER87-int LTR ERV1 -3756 3366 3063 1716 197 0 16 chr12 9756106 9756411 -134526078 + AluJo SINE Alu 1 300 -12 1408 334 49 29 chr12 9756411 9757235 -134525254 - MER87-int LTR ERV1 -4059 3063 2208 1256 304 73 65 chr12 9757339 9758454 -134524035 - MER87-int LTR ERV1 -5061 2061 937 286 298 116 17 chr12 9758770 9758951 -134523538 - MER87-int LTR ERV1 -6386 736 538 2249 60 4 7 chr12 9759252 9759533 -134522956 + AluY SINE Alu 29 308 -3 344 235 0 0 chr12 9759714 9759782 -134522707 - MER87-int LTR ERV1 -1665 121 54 250 326 35 21 chr12 9759909 9760050 -134522439 - MER87 LTR ERV1 0 541 399 1281 227 55 10 chr12 9760160 9760318 -134522171 - AluJo SINE Alu -8 304 155 225 0 0 0 chr12 9760318 9760343 -134522146 + (TTA)n Simple_repeat Simple_repeat 2 26 0 2611 38 0 0 chr12 9760343 9760632 -134521857 - AluY SINE Alu -22 289 1 185 0 0 39 chr12 9760634 9760660 -134521829 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1281 227 55 10 chr12 9760660 9760788 -134521701 - AluJo SINE Alu -157 155 1 2512 63 0 10 chr12 9761073 9761375 -134521114 - AluY SINE Alu -12 299 1 189 206 95 32 chr12 9761587 9761650 -134520839 - MIR SINE MIR -25 237 171 871 313 29 14 chr12 9761712 9762060 -134520429 - MLT1J LTR MaLR -78 433 81 2162 199 38 52 chr12 9762203 9762705 -134519784 - LTR42 LTR ERVL 0 495 1 365 169 14 0 chr12 9763370 9763441 -134519048 - MER4C LTR ERV1 0 465 394 232 264 0 0 chr12 9763701 9763754 -134518735 + MIR SINE MIR 204 256 -6 343 313 55 43 chr12 9764649 9764812 -134517677 - MIR SINE MIR -47 215 51 309 330 0 0 chr12 9764923 9765011 -134517478 + (TG)n Simple_repeat Simple_repeat 1 88 0 270 0 0 0 chr12 9765393 9765423 -134517066 + (CA)n Simple_repeat Simple_repeat 1 30 0 315 0 0 0 chr12 9765479 9765514 -134516975 + (CA)n Simple_repeat Simple_repeat 1 35 0 355 244 39 31 chr12 9766022 9766149 -134516340 + MLT1C LTR MaLR 53 180 -287 281 100 20 0 chr12 9766149 9766199 -134516290 + (CA)n Simple_repeat Simple_repeat 2 52 0 360 153 153 46 chr12 9767131 9767262 -134515227 - L1ME4a LINE L1 -11 6110 5966 210 37 0 0 chr12 9767270 9767297 -134515192 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 901 203 0 31 chr12 9767416 9767579 -134514910 - FRAM SINE Alu -23 153 1 592 335 111 12 chr12 9767663 9768324 -134514165 - L2 LINE L2 -4 3309 2557 365 355 89 0 chr12 9768957 9769160 -134513329 - MIR SINE MIR -29 233 13 519 284 58 36 chr12 9769694 9769919 -134512570 + L2 LINE L2 2732 2961 -353 2433 211 25 9 chr12 9769925 9770485 -134512004 + LTR24B LTR ERV1 1 569 -7 629 284 78 19 chr12 9770487 9770755 -134511734 + L2 LINE L2 3012 3295 -18 266 340 21 32 chr12 9770983 9771077 -134511412 + MIR SINE MIR 21 113 -95 543 258 50 16 chr12 9771279 9771461 -134511028 + L1MC5 LINE L1 7711 7898 -63 2349 124 0 3 chr12 9771486 9771848 -134510641 + L1PA13 LINE L1 5802 6162 -1 412 284 59 24 chr12 9771851 9772184 -134510305 + L1MEc LINE L1 345 1716 -770 2007 118 61 28 chr12 9772231 9772594 -134509895 + THE1C LTR MaLR 1 375 0 262 270 22 36 chr12 9772787 9772816 -134509673 + L1MC/D LINE L1 5668 5696 -2112 1223 111 0 0 chr12 9772816 9772987 -134509502 + L1PA10 LINE L1 5997 6167 -1 262 270 22 36 chr12 9772987 9773094 -134509395 + L1MC/D LINE L1 5696 5802 -2006 7040 164 20 25 chr12 9773177 9773319 -134509170 + L1PB1 LINE L1 3705 3846 -2305 1774 167 3 11 chr12 9773319 9773601 -134508888 + AluSx SINE Alu 1 280 -32 7040 164 20 25 chr12 9773601 9775921 -134506568 + L1PB1 LINE L1 3846 6145 -6 22 0 0 0 chr12 9775922 9775944 -134506545 + AT_rich Low_complexity Low_complexity 1 22 0 251 271 14 29 chr12 9776166 9776236 -134506253 + L2 LINE L2 3154 3222 -50 1711 158 30 3 chr12 9776711 9777008 -134505481 + AluJb SINE Alu 1 305 -7 291 217 72 111 chr12 9777199 9777434 -134505055 + L1MEd LINE L1 876 1101 -5018 220 349 0 24 chr12 9778220 9778303 -134504186 - MER5A DNA MER1_type -50 139 59 3092 72 2 5 chr12 9778758 9779175 -134503314 + L1PA6 LINE L1 5738 6153 -1 180 111 0 0 chr12 9779191 9779218 -134503271 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 277 368 108 40 chr12 9780479 9780799 -134501690 - L2 LINE L2 -424 2890 2540 2335 83 0 13 chr12 9780799 9781099 -134501390 - AluSg SINE Alu -14 296 1 277 368 108 40 chr12 9781099 9781150 -134501339 - L2 LINE L2 -774 2540 2494 260 340 93 0 chr12 9781172 9781269 -134501220 - L2 LINE L2 -284 3029 2924 * 688 274 66 68 chr12 9781240 9781534 -134500955 - L2 LINE L2 -756 2558 2264 1881 161 13 10 chr12 9781534 9781845 -134500644 + AluJb SINE Alu 1 312 0 688 274 66 68 chr12 9781845 9781930 -134500559 - L2 LINE L2 -1050 2264 2180 233 213 21 0 chr12 9783422 9783469 -134499020 + CT-rich Low_complexity Low_complexity 2 49 0 1619 184 14 0 chr12 9783789 9784072 -134498417 - AluJo SINE Alu -25 287 1 793 298 48 42 chr12 9784168 9784601 -134497888 - LTR16A1 LTR ERVL 0 457 22 2346 76 0 13 chr12 9784822 9785123 -134497366 + AluY SINE Alu 1 297 -14 184 326 174 22 chr12 9787775 9787959 -134494530 - L2 LINE L2 -1244 2070 1859 22 35 0 0 chr12 9788195 9788224 -134494265 + AT_rich Low_complexity Low_complexity 1 29 0 251 308 154 45 chr12 9789344 9789500 -134492989 - MIR SINE MIR -77 185 13 36 70 0 0 chr12 9789588 9789659 -134492830 + AT_rich Low_complexity Low_complexity 1 71 0 755 153 175 34 chr12 9790005 9790182 -134492307 - MER3 DNA MER1_type -1 208 7 23 0 0 0 chr12 9791208 9791231 -134491258 + AT_rich Low_complexity Low_complexity 1 23 0 7463 59 1 3 chr12 9791395 9793104 -134489385 - L1PA5 LINE L1 -13 6141 4418 6982 60 2 0 chr12 9793105 9794529 -134487960 + L1PA7 LINE L1 4728 6153 -1 36 23 0 0 chr12 9794602 9794645 -134487844 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr12 9794865 9794887 -134487602 + AT_rich Low_complexity Low_complexity 1 22 0 669 222 70 35 chr12 9796042 9796213 -134486276 - MIR SINE MIR 0 262 86 2006 111 11 0 chr12 9796259 9796538 -134485951 - AluSx SINE Alu -26 286 5 222 339 57 8 chr12 9796619 9796743 -134485746 - L2 LINE L2 -4 3309 3180 1171 81 6 6 chr12 9796894 9797054 -134485435 + L1PA15 LINE L1 5997 6156 -9 287 333 14 0 chr12 9797586 9797655 -134484834 - MIR SINE MIR -183 79 10 24 0 0 0 chr12 9797860 9797884 -134484605 + AT_rich Low_complexity Low_complexity 1 24 0 2092 95 14 10 chr12 9798671 9798967 -134483522 - AluSq SINE Alu -16 297 1 1927 155 3 10 chr12 9799295 9799598 -134482891 + AluJo SINE Alu 1 301 -11 448 155 0 21 chr12 9799615 9799712 -134482777 + GA-rich Low_complexity Low_complexity 4 98 0 201 297 0 40 chr12 9799820 9799921 -134482568 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 206 225 0 0 chr12 9800544 9800584 -134481905 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 420 225 23 31 chr12 9800641 9800770 -134481719 - MER94 DNA DNA 0 134 7 233 191 96 85 chr12 9800816 9800910 -134481579 - L2 LINE L2 -94 3219 3125 445 252 26 0 chr12 9800944 9801059 -134481430 + MER58 DNA MER1_type 1 118 -97 213 311 0 0 chr12 9801117 9801162 -134481327 - L2 LINE L2 -256 3057 3013 263 140 120 0 chr12 9801217 9801267 -134481222 - MER5A DNA MER1_type 0 189 134 22 56 0 0 chr12 9801480 9801516 -134480973 + AT_rich Low_complexity Low_complexity 1 36 0 306 275 48 24 chr12 9802063 9802230 -134480259 - L1M4 LINE L1 -2947 3199 3029 253 138 52 0 chr12 9802278 9802336 -134480153 - L1MB2 LINE L1 0 6171 6111 189 0 0 0 chr12 9802364 9802385 -134480104 + (TTTTTA)n Simple_repeat Simple_repeat 1 21 0 190 314 186 0 chr12 9802474 9802560 -134479929 - MIR SINE MIR 0 262 161 232 209 30 45 chr12 9802592 9802659 -134479830 + MER92C LTR ERV1 280 345 -209 483 272 16 52 chr12 9806122 9806313 -134476176 - L1MC5 LINE L1 -589 7372 7189 809 192 48 6 chr12 9806325 9806492 -134475997 - MER20 DNA MER1_type -5 214 41 546 57 0 0 chr12 9806725 9806795 -134475694 + (TG)n Simple_repeat Simple_repeat 2 71 0 249 283 183 22 chr12 9810606 9810786 -134471703 + MIR SINE MIR 48 256 -6 222 328 0 0 chr12 9810889 9810947 -134471542 - L2 LINE L2 0 3272 3215 337 242 0 0 chr12 9811090 9811156 -134471333 + MER5A DNA MER1_type 1 66 -123 2316 86 0 10 chr12 9811169 9811472 -134471017 + AluY SINE Alu 1 300 -11 214 200 0 0 chr12 9811544 9811584 -134470905 + (TA)n Simple_repeat Simple_repeat 2 41 0 2193 60 0 11 chr12 9812240 9812522 -134469967 - AluY SINE Alu -11 300 22 362 294 32 81 chr12 9812522 9812770 -134469719 - HAL1 LINE L1 -2121 386 151 391 356 22 46 chr12 9812775 9813143 -134469346 + L2 LINE L2 2615 2973 -341 206 219 31 47 chr12 9813432 9813496 -134468993 + MIR SINE MIR 74 136 -126 258 318 34 45 chr12 9815896 9816075 -134466414 - MIR SINE MIR 0 262 86 263 135 16 95 chr12 9816754 9816880 -134465609 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 36 40 0 0 chr12 9816959 9817009 -134465480 + AT_rich Low_complexity Low_complexity 1 50 0 272 289 48 29 chr12 9817726 9817830 -134464659 - L2 LINE L2 -37 3276 3171 2152 165 71 13 chr12 9817855 9817911 -134464578 - MSTA LTR MaLR -12 416 365 2217 125 0 3 chr12 9817911 9818222 -134464267 + AluSq SINE Alu 1 310 -3 2152 165 71 13 chr12 9818222 9818558 -134463931 - MSTA LTR MaLR -63 365 1 748 319 39 0 chr12 9818589 9818818 -134463671 - MIR SINE MIR -2 260 23 184 0 97 0 chr12 9818906 9818937 -134463552 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 42748 32 23 1 chr12 9818937 9824949 -134457540 - L1PA3 LINE L1 -10 6145 2 317 185 7 206 chr12 9825196 9825342 -134457147 - MER105 DNA DNA -86 118 2 448 302 37 26 chr12 9826011 9826200 -134456289 - LTR67 LTR ERVL -338 219 29 21 0 0 0 chr12 9828104 9828125 -134454364 + AT_rich Low_complexity Low_complexity 1 21 0 863 199 30 102 chr12 9828136 9828321 -134454168 + L1MA6 LINE L1 6053 6250 -50 225 0 0 0 chr12 9828321 9828346 -134454143 + (TG)n Simple_repeat Simple_repeat 2 26 0 863 199 30 102 chr12 9828346 9828374 -134454115 + L1MA6 LINE L1 6250 6248 -52 2074 140 0 7 chr12 9828374 9828674 -134453815 - AluSx SINE Alu -14 298 1 863 199 30 102 chr12 9828674 9828725 -134453764 + L1MA6 LINE L1 6247 6300 0 2296 108 0 0 chr12 9829429 9829735 -134452754 + AluSg SINE Alu 1 306 -4 27 0 0 0 chr12 9830407 9830434 -134452055 + AT_rich Low_complexity Low_complexity 1 27 0 241 284 67 15 chr12 9830526 9830660 -134451829 - L1ME LINE L1 -458 5663 5523 24 32 0 0 chr12 9830827 9830858 -134451631 + AT_rich Low_complexity Low_complexity 1 31 0 2140 124 0 6 chr12 9830899 9831213 -134451276 + AluSx SINE Alu 1 312 0 558 348 6 11 chr12 9831257 9831438 -134451051 - MIR SINE MIR -78 184 5 21 0 0 0 chr12 9832543 9832564 -134449925 + AT_rich Low_complexity Low_complexity 1 21 0 254 279 123 13 chr12 9832725 9832820 -134449669 + MIR SINE MIR 7 112 -96 21 0 0 0 chr12 9833262 9833283 -134449206 + AT_rich Low_complexity Low_complexity 1 21 0 1692 168 41 0 chr12 9834517 9834809 -134447680 + AluJb SINE Alu 1 304 -8 469 313 54 75 chr12 9834859 9835191 -134447298 - L1MC/D LINE L1 -2163 5645 5321 534 303 69 6 chr12 9835986 9836161 -134446328 + MIR SINE MIR 16 201 -61 3742 106 9 110 chr12 9836396 9836680 -134445809 - MER4A LTR ERV1 0 664 353 2184 127 0 0 chr12 9836680 9836980 -134445509 + AluSx SINE Alu 1 300 -12 3742 106 9 110 chr12 9836980 9837433 -134445056 - MER4A LTR ERV1 -311 353 1 216 191 0 0 chr12 9838009 9838051 -134444438 + L2 LINE L2 3271 3312 -1 2345 80 3 26 chr12 9838057 9838369 -134444120 + AluSx SINE Alu 1 305 -7 25 65 0 0 chr12 9839324 9839370 -134443119 + AT_rich Low_complexity Low_complexity 1 46 0 2442 128 163 22 chr12 9840527 9840986 -134441503 - MER1A DNA MER1_type -5 524 1 259 249 54 108 chr12 9840996 9841181 -134441308 + MIR SINE MIR 5 179 -83 * 503 272 133 22 chr12 9841179 9841359 -134441130 - MIR SINE MIR -32 230 31 21 36 0 0 chr12 9841751 9841779 -134440710 + AT_rich Low_complexity Low_complexity 1 28 0 285 182 0 0 chr12 9841786 9841841 -134440648 + (TA)n Simple_repeat Simple_repeat 2 56 0 2031 44 0 0 chr12 9841996 9842245 -134440244 + L1PA3 LINE L1 5906 6154 -1 399 259 188 18 chr12 9843611 9843835 -134438654 - L1ME4a LINE L1 -2 6119 5858 1599 192 3 14 chr12 9844041 9844338 -134438151 + AluSx SINE Alu 1 294 -18 213 196 0 0 chr12 9844341 9844387 -134438102 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 231 36 0 0 chr12 9844389 9844417 -134438072 + (CA)n Simple_repeat Simple_repeat 2 29 0 355 172 62 130 chr12 9844724 9844853 -134437636 - L1MC4 LINE L1 0 8042 7929 381 43 0 0 chr12 9844853 9844900 -134437589 + (CA)n Simple_repeat Simple_repeat 2 48 0 355 172 62 130 chr12 9844900 9844962 -134437527 - L1MC4 LINE L1 -113 7929 7864 654 115 8 41 chr12 9844970 9845092 -134437397 + MER4C LTR ERV1 1 118 -347 657 308 62 47 chr12 9845093 9845557 -134436932 - L1M4 LINE L1 -2884 3262 2792 23 33 0 0 chr12 9846247 9846277 -134436212 + AT_rich Low_complexity Low_complexity 1 30 0 2472 60 0 3 chr12 9846331 9846629 -134435860 + AluY SINE Alu 1 297 -14 676 213 0 0 chr12 9846846 9846973 -134435516 + AluJb SINE Alu 175 301 -11 561 337 89 47 chr12 9847015 9847564 -134434925 - HAL1b LINE L1 -756 592 21 306 0 0 0 chr12 9849457 9849491 -134432998 + (TG)n Simple_repeat Simple_repeat 2 35 0 325 244 32 32 chr12 9849499 9849622 -134432867 + MIR SINE MIR 139 261 -1 2015 154 11 8 chr12 9850209 9850566 -134431923 - Tigger3b DNA MER2_type 0 1231 874 3716 134 34 0 chr12 9850567 9851184 -134431305 - Tigger3b DNA MER2_type -593 638 1 213 65 0 0 chr12 9853451 9853482 -134429007 + (CAA)n Simple_repeat Simple_repeat 3 33 0 208 146 0 24 chr12 9856982 9857023 -134425466 + (TTG)n Simple_repeat Simple_repeat 3 42 0 26 0 0 0 chr12 9857574 9857600 -134424889 + AT_rich Low_complexity Low_complexity 1 26 0 254 309 115 14 chr12 9859710 9859849 -134422640 + MER5A DNA MER1_type 35 187 -2 2177 134 0 0 chr12 9861028 9861319 -134421170 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr12 9861344 9861372 -134421117 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 9861430 9861451 -134421038 + AT_rich Low_complexity Low_complexity 1 21 0 1547 159 90 56 chr12 9862004 9862381 -134420108 - MLT1B LTR MaLR 0 390 1 254 284 92 46 chr12 9862835 9862944 -134419545 - L2 LINE L2 -1 3312 3199 32 75 0 0 chr12 9863439 9863506 -134418983 + AT_rich Low_complexity Low_complexity 1 67 0 1339 209 118 41 chr12 9863761 9864400 -134418089 + SATR1 Satellite Satellite 1 688 -131 3885 99 3 8 chr12 9864411 9865008 -134417481 - HERVE LTR ERV1 -3967 3846 3253 1324 209 100 74 chr12 9865103 9865968 -134416521 + SATR1 Satellite Satellite 1 888 -131 3911 103 2 8 chr12 9865979 9866581 -134415908 - HERVE LTR ERV1 -3967 3846 3249 327 267 140 100 chr12 9867648 9868066 -134414423 + L1MDa LINE L1 527 962 -5578 1088 135 60 0 chr12 9868586 9868786 -134413703 - L1MA2 LINE L1 0 6304 6093 1985 146 3 29 chr12 9869570 9869886 -134412603 - AluSx SINE Alu 0 312 5 2640 192 41 10 chr12 9871328 9871937 -134410552 - L1MA9 LINE L1 -110 6202 5575 184 358 36 29 chr12 9872825 9872962 -134409527 + MIR SINE MIR 52 189 -73 324 286 0 19 chr12 9873358 9873463 -134409026 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 220 277 0 0 chr12 9873815 9873862 -134408627 + polypurine Low_complexity Low_complexity 2 48 0 1061 233 111 13 chr12 9874459 9874577 -134407912 + MLT1C LTR MaLR 53 158 -309 306 87 0 0 chr12 9874577 9874623 -134407866 + (CA)n Simple_repeat Simple_repeat 2 47 0 1061 233 111 13 chr12 9874623 9874882 -134407607 + MLT1C LTR MaLR 158 467 0 978 168 38 43 chr12 9875715 9875924 -134406565 + AluJo SINE Alu 104 311 -1 1465 238 28 16 chr12 9875925 9876362 -134406127 - L1M4 LINE L1 -1921 4225 3784 234 0 0 0 chr12 9876385 9876411 -134406078 + (CA)n Simple_repeat Simple_repeat 1 26 0 582 237 102 14 chr12 9876424 9876707 -134405782 + L1M4 LINE L1 4301 4608 -1538 18661 27 5 0 chr12 9876816 9879826 -134402663 + L1PA2 LINE L1 3131 6152 -3 955 217 45 25 chr12 9879890 9880134 -134402355 - MIR SINE MIR -2 260 12 4537 113 19 9 chr12 9880349 9881036 -134401453 + L1PA14 LINE L1 5468 6161 0 331 204 68 0 chr12 9881939 9882027 -134400462 - LTR50 LTR ERVL -1 794 701 2270 83 6 55 chr12 9883011 9883337 -134399152 - AluSq SINE Alu -1 312 3 689 284 114 8 chr12 9883811 9884047 -134398442 + MER110-int LTR ERV1 2298 2558 -2089 465 228 91 59 chr12 9884086 9884305 -134398184 + MER110-int LTR ERV1 2639 2864 -1783 612 266 72 14 chr12 9884737 9884959 -134397530 + MER106A DNA MER1_type 1 235 -1 234 372 0 12 chr12 9885886 9885972 -134396517 - L3 LINE CR1 -1 1576 1492 1372 218 119 73 chr12 9886054 9886549 -134395940 + MLT1H LTR MaLR 32 549 0 2167 97 10 7 chr12 9886923 9887222 -134395267 + AluSx SINE Alu 1 300 -12 392 301 16 8 chr12 9887508 9887631 -134394858 - L2 LINE L2 -6 3307 3184 319 236 154 32 chr12 9888240 9888363 -134394126 - L2 LINE L2 0 3313 3176 21 0 0 0 chr12 9888925 9888946 -134393543 + AT_rich Low_complexity Low_complexity 1 21 0 3730 170 54 49 chr12 9889552 9889681 -134392808 - L1MA9 LINE L1 -2 6310 6183 180 77 0 0 chr12 9889681 9889707 -134392782 + (TG)n Simple_repeat Simple_repeat 1 26 0 3730 170 54 49 chr12 9889707 9890416 -134392073 - L1MA9 LINE L1 -129 6183 5468 449 316 48 84 chr12 9891882 9892408 -134390081 - MER34 LTR ERV1 -35 507 1 192 227 0 23 chr12 9892448 9892492 -134389997 + MIR SINE MIR 110 152 -110 260 333 94 36 chr12 9893617 9893809 -134388680 + L2 LINE L2 2555 2757 -557 336 219 114 0 chr12 9894995 9895100 -134387389 + MER112 DNA MER1_type 136 252 -8 209 285 128 45 chr12 9896247 9896426 -134386063 - MIR3 SINE MIR -5 203 10 494 387 5 5 chr12 9896888 9897092 -134385397 + MIR SINE MIR 2 205 -57 8127 54 2 1 chr12 9897840 9898805 -134383684 + LTR5 LTR ERVK 1 966 -3 202 139 0 23 chr12 9898985 9899028 -134383461 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 251 200 25 75 chr12 9899359 9899439 -134383050 - L2 LINE L2 -1 3312 3237 28 71 0 0 chr12 9899974 9900030 -134382459 + AT_rich Low_complexity Low_complexity 1 56 0 2084 66 31 45 chr12 9900801 9901111 -134381378 - AluSp SINE Alu 0 306 1 484 282 46 17 chr12 9901208 9901382 -134381107 + MIR SINE MIR 84 262 0 341 335 84 17 chr12 9901634 9901813 -134380676 + L2 LINE L2 2699 2889 -425 800 268 84 86 chr12 9901867 9902215 -134380274 + L2 LINE L2 2849 3197 -116 4637 61 2 0 chr12 9902215 9902802 -134379687 - L1PA6 LINE L1 -1 6153 5566 800 268 84 86 chr12 9902802 9902919 -134379570 + L2 LINE L2 3197 3313 0 444 89 36 18 chr12 9904024 9904136 -134378353 + (TA)n Simple_repeat Simple_repeat 1 114 0 1780 168 24 3 chr12 9904136 9904428 -134378061 - AluJo SINE Alu -14 298 1 264 30 0 0 chr12 9904588 9904621 -134377868 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 1093 67 11 28 chr12 9904623 9904803 -134377686 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 266 174 0 0 chr12 9904814 9904860 -134377629 - MER66A LTR ERV1 -146 332 287 625 182 28 7 chr12 9905519 9905662 -134376827 - MER96B DNA MER1_type? 0 417 272 7215 66 2 0 chr12 9905978 9907677 -134374812 - L1PA5 LINE L1 0 6154 4435 35377 76 10 3 chr12 9907732 9912482 -134370007 + L1P LINE L1 11 4792 -1354 261 119 0 0 chr12 9912482 9912524 -134369965 + L1P LINE L1 4670 4711 -1435 1553 152 105 84 chr12 9913715 9913960 -134368529 + MLT1B LTR MaLR 1 258 -132 2125 102 17 7 chr12 9913960 9914255 -134368234 + AluSg SINE Alu 13 310 0 1553 152 105 84 chr12 9914255 9914391 -134368098 + MLT1B LTR MaLR 258 390 0 3517 163 15 70 chr12 9915165 9915442 -134367047 - L1MB2 LINE L1 -1 6406 6115 2395 81 3 0 chr12 9915442 9915737 -134366752 - AluSx SINE Alu -16 296 1 3517 163 15 70 chr12 9915737 9915978 -134366511 - L1MB2 LINE L1 -292 6115 5862 993 180 59 129 chr12 9915978 9916366 -134366123 - MLT1A1 LTR MaLR -4 361 1 3517 163 15 70 chr12 9916366 9916391 -134366098 - L1MB2 LINE L1 -545 5862 5837 1025 145 6 0 chr12 9916391 9916570 -134365919 + CT-rich Low_complexity Low_complexity 1 180 0 186 43 0 0 chr12 9916579 9916602 -134365887 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3517 163 15 70 chr12 9916602 9916836 -134365653 - L1MB2 LINE L1 -578 5829 5660 3011 172 85 113 chr12 9916836 9917751 -134364738 - L1MCa LINE L1 -5520 906 17 11122 220 44 25 chr12 9917751 9918022 -134364467 - L1MB2 LINE L1 -726 5678 5414 2154 107 3 3 chr12 9918022 9918311 -134364178 - AluSx SINE Alu -23 289 1 11122 220 44 25 chr12 9918311 9919653 -134362836 - L1MB2 LINE L1 -990 5414 4100 1825 173 0 16 chr12 9919653 9919966 -134362523 - AluJo SINE Alu 0 312 5 11122 220 44 25 chr12 9919966 9921460 -134361029 - L1MB2 LINE L1 -2304 4100 2486 600 198 0 0 chr12 9921503 9921604 -134360885 - U6 snRNA snRNA -6 101 1 866 260 42 16 chr12 9921611 9921919 -134360570 - L1MB2 LINE L1 -4050 2334 2019 733 231 60 100 chr12 9921996 9922704 -134359785 - L1M3de LINE L1 -4766 1547 810 267 211 58 10 chr12 9923463 9923567 -134358922 + (TA)n Simple_repeat Simple_repeat 2 110 0 242 238 206 75 chr12 9923966 9924126 -134358363 + MER5A DNA MER1_type 2 182 -7 22 0 0 0 chr12 9924647 9924669 -134357820 + AT_rich Low_complexity Low_complexity 1 22 0 39607 73 11 3 chr12 9924674 9930765 -134351724 - L1PA5 LINE L1 -11 6143 5 1377 178 6 86 chr12 9930776 9931114 -134351375 - LTR9 LTR ERV1 -301 311 1 1344 137 9 5 chr12 9931114 9931315 -134351174 + LTR8 LTR ERV1 490 691 0 275 216 248 52 chr12 9931331 9931484 -134351005 + MER5A DNA MER1_type 7 189 0 2078 207 8 47 chr12 9932299 9932830 -134349659 + MER67D LTR ERV1 1 510 -4 212 331 140 15 chr12 9933027 9933163 -134349326 + L2 LINE L2 2018 2170 -1144 566 277 36 108 chr12 9933198 9933559 -134348930 + L2 LINE L2 2643 2977 -337 1819 189 13 2 chr12 9933581 9933978 -134348511 + L1 LINE L1 4051 4451 -1695 1230 221 40 13 chr12 9933995 9934294 -134348195 - MER61A LTR ERV1 -36 307 1 24643 98 26 19 chr12 9934294 9936225 -134346264 - MER61A-int LTR ERV1 0 5217 3300 2346 100 10 0 chr12 9936225 9936535 -134345954 - AluSp SINE Alu 0 313 1 24643 98 26 19 chr12 9936535 9938739 -134343750 - MER61A-int LTR ERV1 -1917 3300 958 1690 131 49 16 chr12 9938739 9939045 -134343444 - MER61A-int LTR ERV1 -4377 840 525 1172 125 21 0 chr12 9941379 9941571 -134340918 + THE1-int LTR MaLR 310 505 -1075 1308 167 8 0 chr12 9941588 9941833 -134340656 + L1MA5A LINE L1 6051 6297 0 24 0 0 0 chr12 9941920 9941944 -134340545 + AT_rich Low_complexity Low_complexity 1 24 0 601 200 0 62 chr12 9942454 9942500 -134339989 - MER5C DNA MER1_type -200 124 77 2157 114 54 20 chr12 9942500 9942850 -134339639 + THE1B LTR MaLR 1 362 -2 601 200 0 62 chr12 9942850 9942933 -134339556 - MER5C DNA MER1_type -247 77 3 307 138 15 15 chr12 9943898 9943963 -134338526 + (TA)n Simple_repeat Simple_repeat 2 66 0 1095 167 98 20 chr12 9944049 9944300 -134338189 - L1MC2 LINE L1 0 6344 6063 4550 99 67 40 chr12 9944300 9945058 -134337431 - LTR19C LTR ERV1 0 779 1 1095 167 98 20 chr12 9945058 9945112 -134337377 - L1MC2 LINE L1 -281 6063 6015 859 147 42 0 chr12 9946206 9946349 -134336140 - LTR8 LTR ERV1 0 691 543 1661 169 50 33 chr12 9946788 9947125 -134335364 - MER61A LTR ERV1 0 343 1 1055 228 48 10 chr12 9947498 9947810 -134334679 - L1ME1 LINE L1 -15 6151 5828 415 157 72 0 chr12 9947812 9947895 -134334594 - MER92A LTR ERV1 0 412 324 2176 95 14 14 chr12 9947902 9948198 -134334291 + AluY SINE Alu 1 296 -15 267 290 47 0 chr12 9948319 9948426 -134334063 - MER92A LTR ERV1 -299 113 2 950 261 16 4 chr12 9948458 9948715 -134333774 - L1ME1 LINE L1 -395 5771 5512 2312 120 62 10 chr12 9948720 9949120 -134333369 - MSTA LTR MaLR -7 421 1 3848 253 45 17 chr12 9949127 9950750 -134331739 - L1ME1 LINE L1 -751 5395 3840 713 278 155 23 chr12 9951235 9951930 -134330559 - L2 LINE L2 -10 3303 2388 275 232 12 37 chr12 9952221 9952303 -134330186 - Charlie2 DNA MER1_type -2656 126 47 210 370 110 7 chr12 9952807 9952953 -134329536 - MIR SINE MIR -8 254 94 655 165 0 0 chr12 9954424 9954533 -134327956 + THE1-int LTR MaLR 1003 1111 -469 350 109 0 0 chr12 9954533 9954588 -134327901 + L1PA16 LINE L1 6107 6161 -5 388 125 16 0 chr12 9954954 9955018 -134327471 + MER31-int LTR ERV1 2506 2570 -2366 * 1136 190 82 116 chr12 9954997 9955633 -134326856 + MER31-int LTR ERV1 3953 4566 -1765 965 204 184 20 chr12 9955628 9955981 -134326508 + MER31-int LTR ERV1 3400 3810 -1126 * 1977 149 3 0 chr12 9955981 9956277 -134326212 + AluSx SINE Alu 1 297 -15 319 176 14 54 chr12 9956289 9956363 -134326126 + MER31-int LTR ERV1 3886 3956 -980 267 239 60 0 chr12 9956361 9956428 -134326061 + MER31-int LTR ERV1 5310 5380 -951 * 479 286 0 14 chr12 9956449 9956596 -134325893 + MER31-int LTR ERV1 4260 4404 -532 2009 141 0 26 chr12 9956776 9957080 -134325409 - AluSx SINE Alu -16 296 1 1547 204 68 0 chr12 9957632 9957955 -134324534 + MER101 LTR ERV1 24 368 -106 3009 176 16 4 chr12 9958197 9958747 -134323742 - MER41D LTR ERV1 0 557 1 2635 156 11 13 chr12 9958962 9959436 -134323053 - L1PA16 LINE L1 -1 6165 5693 1901 152 12 3 chr12 9959437 9959766 -134322723 + LTR45B LTR ERV1 24 355 -134 1364 306 30 64 chr12 9959902 9960757 -134321732 - L1M3d LINE L1 -5051 840 15 2190 241 54 6 chr12 9960764 9961395 -134321094 + L1MD1 LINE L1 5581 6241 -1 559 307 25 0 chr12 9961462 9961625 -134320864 - MER45A DNA AcHobo -11 167 1 187 279 27 72 chr12 9962046 9962157 -134320332 - MIR SINE MIR -62 200 95 1876 200 86 28 chr12 9962163 9962197 -134320292 - MLT1D LTR MaLR -13 492 461 1967 181 14 14 chr12 9962197 9962562 -134319927 + MLT1A1 LTR MaLR 1 365 0 1876 200 86 28 chr12 9962562 9962992 -134319497 - MLT1D LTR MaLR -44 461 1 2298 107 7 0 chr12 9963066 9963375 -134319114 - AluSx SINE Alu -1 311 1 30 59 0 0 chr12 9963713 9963764 -134318725 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr12 9964129 9964151 -134318338 + AT_rich Low_complexity Low_complexity 1 22 0 1672 95 0 0 chr12 9964151 9964372 -134318117 - AluY SINE Alu -7 304 84 2013 134 39 0 chr12 9964378 9964661 -134317828 - AluSx SINE Alu -18 294 1 292 303 133 12 chr12 9965110 9965275 -134317214 + MIR SINE MIR 63 247 -15 250 236 112 77 chr12 9966187 9966420 -134316069 + L1ME3A LINE L1 5924 6164 -6 591 237 79 62 chr12 9967885 9968189 -134314300 - L1MDb LINE L1 -5318 1091 783 2432 44 10 0 chr12 9968601 9968895 -134313594 - AluY SINE Alu -14 297 1 565 255 36 16 chr12 9969275 9969378 -134313111 - L1MC1 LINE L1 -2 6611 6501 1752 153 131 28 chr12 9969378 9969737 -134312752 - MSTD LTR MaLR 0 396 1 565 255 36 16 chr12 9969737 9969825 -134312664 - L1MC1 LINE L1 -112 6501 6416 * 7319 189 36 51 chr12 9969821 9971920 -134310569 - L1P3 LINE L1 -4370 2091 10 3046 222 69 44 chr12 9971933 9972567 -134309922 - L1MC1 LINE L1 -735 5889 5272 2408 63 3 13 chr12 9972567 9972869 -134309620 - AluY SINE Alu -12 299 1 3046 222 69 44 chr12 9972869 9975084 -134307405 - L1MC1 LINE L1 -1352 5272 3114 1683 189 7 13 chr12 9975084 9975386 -134307103 - AluSx SINE Alu 0 312 13 3046 222 69 44 chr12 9975386 9975906 -134306583 - L1MC1 LINE L1 -3510 3114 2608 1459 236 7 10 chr12 9975906 9976216 -134306273 - AluJo SINE Alu -3 309 1 3046 222 69 44 chr12 9976216 9976993 -134305496 - L1MC1 LINE L1 -4016 2608 1455 285 224 59 0 chr12 9976997 9977082 -134305407 + L1MC2 LINE L1 6246 6335 -9 2480 134 8 0 chr12 9977371 9977743 -134304746 + THE1C LTR MaLR 1 375 0 362 216 43 74 chr12 9977901 9978063 -134304426 - L1MC5 LINE L1 -435 7526 7370 181 148 130 56 chr12 9978366 9978420 -134304069 + L3 LINE CR1 1380 1437 -140 12022 99 16 12 chr12 9979746 9981737 -134300752 - L1PA7 LINE L1 -1 6468 4461 180 0 0 0 chr12 9981737 9981757 -134300732 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 12022 99 16 12 chr12 9981757 9982520 -134299969 - L1PA7 LINE L1 -2008 4461 3703 8060 101 10 15 chr12 9982521 9983681 -134298808 - L1PA7 LINE L1 -5299 1162 8 3433 145 0 11 chr12 9984374 9984906 -134297583 - MER1A DNA MER1_type 0 527 2 249 257 143 38 chr12 9985075 9985180 -134297309 + MIR SINE MIR 46 161 -101 195 69 0 0 chr12 9985245 9985274 -134297215 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr12 9985566 9985590 -134296899 + (T)n Simple_repeat Simple_repeat 1 24 0 1993 139 13 7 chr12 9985811 9986112 -134296377 + AluSx SINE Alu 1 303 -9 3534 249 38 41 chr12 9986140 9989237 -134293252 + L1M4c LINE L1 31 3333 -3049 21 71 0 0 chr12 9989291 9989333 -134293156 + AT_rich Low_complexity Low_complexity 1 42 0 1963 130 0 14 chr12 9989463 9989796 -134292693 - AluSx SINE Alu 0 348 20 233 259 104 7 chr12 9989866 9990001 -134292488 + L1ME LINE L1 5682 5829 -333 193 316 168 0 chr12 9991018 9991113 -134291376 + L2 LINE L2 3198 3308 -5 1730 178 0 25 chr12 9991175 9991489 -134291000 - AluJb SINE Alu -6 306 1 437 200 200 0 chr12 9992292 9992417 -134290072 + L1MA9 LINE L1 5301 5450 -862 1327 164 19 0 chr12 9992433 9992646 -134289843 - THE1B LTR MaLR -2 362 146 324 48 0 0 chr12 9993231 9993273 -134289216 + (ATG)n Simple_repeat Simple_repeat 3 44 0 22 35 0 0 chr12 9993910 9993939 -134288550 + AT_rich Low_complexity Low_complexity 1 29 0 596 198 60 0 chr12 9993940 9994056 -134288433 - THE1B LTR MaLR -252 123 1 3204 184 62 49 chr12 9994057 9994397 -134288092 + L1MA9 LINE L1 5464 5798 -514 225 94 0 0 chr12 9994397 9994429 -134288060 + (TA)n Simple_repeat Simple_repeat 1 32 0 3204 184 62 49 chr12 9994429 9994472 -134288017 + L1MA9 LINE L1 5798 5839 -473 3739 101 0 4 chr12 9994472 9994985 -134287504 + MER9 LTR ERVK 1 511 0 3204 184 62 49 chr12 9994985 9995400 -134287089 + L1MA9 LINE L1 5839 6274 -38 1488 138 49 30 chr12 9995469 9995774 -134286715 - L1MA7 LINE L1 0 6291 5981 1766 175 49 3 chr12 9995781 9996129 -134286360 + L1 LINE L1 4875 5238 -908 1560 226 107 15 chr12 9996129 9996669 -134285820 + LTR48B LTR ERV1 1 590 -54 1438 246 68 64 chr12 9997043 9997483 -134285006 + MLT2B3 LTR ERVL 1 442 -112 485 163 47 0 chr12 9997768 9997854 -134284635 - MLT2B2 LTR ERVL -425 90 1 2248 203 82 59 chr12 9999185 9999993 -134282496 - LTR1B LTR ERV1 0 826 1 1636 216 0 0 chr12 10000751 10001070 -134281419 - AluJb SINE Alu 0 319 1 10446 166 33 4 chr12 10001783 10004528 -134277961 - L1PA12 LINE L1 0 6168 3355 314 164 15 15 chr12 10004854 10004921 -134277568 + LTR1 LTR ERV1 12 78 -707 * 976 101 7 14 chr12 10004915 10005053 -134277436 + LTR1 LTR ERV1 649 785 0 12158 161 30 12 chr12 10005145 10007163 -134275326 + HUERS-P2 LTR ERV1 207 2260 -828 3859 163 26 8 chr12 10007163 10007820 -134274669 + HUERS-P2 LTR ERV1 2420 3088 0 3824 119 52 103 chr12 10007826 10008635 -134273854 + LTR1 LTR ERV1 18 785 0 22 0 0 0 chr12 10008882 10008904 -134273585 + AT_rich Low_complexity Low_complexity 1 22 0 1085 299 113 80 chr12 10008907 10009438 -134273051 + L2 LINE L2 1932 2547 -767 278 116 70 0 chr12 10009438 10009481 -134273008 + FLAM_A SINE Alu 64 109 -24 1085 299 113 80 chr12 10009481 10009797 -134272692 + L2 LINE L2 2547 2851 -463 1149 257 12 6 chr12 10009856 10010187 -134272302 - L1MCc LINE L1 -1926 5015 4683 2847 42 0 0 chr12 10010306 10010638 -134271851 - LTR2B LTR ERV1 0 490 159 230 333 30 10 chr12 10010646 10010745 -134271744 + L2 LINE L2 2751 2851 -463 1249 20 47 0 chr12 10010826 10010974 -134271515 - LTR2B LTR ERV1 -335 155 1 11714 172 12 6 chr12 10010974 10013012 -134269477 - Harlequin LTR ERV1 0 6896 4846 1151 124 0 0 chr12 10014506 10014667 -134267822 + AluY SINE Alu 3 163 -148 375 250 86 26 chr12 10014741 10014893 -134267596 + MER104 DNA Tc2 15 175 -5 240 217 100 0 chr12 10014890 10014950 -134267539 + MLT1J LTR MaLR 427 492 -19 * 538 264 17 17 chr12 10015031 10015205 -134267284 - L1M4 LINE L1 -1263 4883 4710 1795 237 56 52 chr12 10015205 10015902 -134266587 - L1MCc LINE L1 -3028 3913 3211 1892 175 18 45 chr12 10015902 10016303 -134266186 + MLT1B LTR MaLR 1 390 0 1795 237 56 52 chr12 10016303 10016343 -134266146 - L1MCc LINE L1 -3730 3211 3173 497 263 74 91 chr12 10016350 10016529 -134265960 - L1MCc LINE L1 -5060 1363 1191 929 174 105 65 chr12 10016529 10016620 -134265869 + AluJo SINE Alu 2 88 -214 2462 78 0 0 chr12 10016620 10016927 -134265562 + AluY SINE Alu 1 307 -4 929 174 105 65 chr12 10016927 10017111 -134265378 + AluJo SINE Alu 88 288 -14 497 263 74 91 chr12 10017111 10017270 -134265219 - L1MCc LINE L1 -5232 1191 1031 2251 74 10 7 chr12 10017717 10018016 -134264473 - AluSp SINE Alu -13 300 1 339 374 26 63 chr12 10018030 10018380 -134264109 - L1MCc LINE L1 -5630 792 456 189 276 92 13 chr12 10020406 10020482 -134262007 - L2 LINE L2 0 3313 3232 267 122 0 0 chr12 10020799 10020848 -134261641 + (CA)n Simple_repeat Simple_repeat 2 50 0 1577 275 89 50 chr12 10020850 10021281 -134261208 + L1ME LINE L1 99 512 -5568 1682 186 16 13 chr12 10021281 10021592 -134260897 + AluSx SINE Alu 1 312 0 1577 275 89 50 chr12 10021592 10022643 -134259846 + L1ME LINE L1 512 1643 -4437 532 260 93 51 chr12 10023487 10023918 -134258571 + L1MEd LINE L1 700 1148 -4971 32 67 0 0 chr12 10024399 10024459 -134258030 + AT_rich Low_complexity Low_complexity 1 60 0 196 190 52 35 chr12 10024757 10024815 -134257674 + L3 LINE CR1 623 681 -896 23 54 0 0 chr12 10025723 10025760 -134256729 + AT_rich Low_complexity Low_complexity 1 37 0 357 329 88 7 chr12 10026105 10026242 -134256247 + MIR3 SINE MIR 54 201 -7 325 331 149 11 chr12 10027457 10027632 -134254857 - MIR3 SINE MIR -4 204 6 1675 182 19 3 chr12 10028054 10028361 -134254128 - AluJb SINE Alu 0 312 1 207 416 0 0 chr12 10028669 10028746 -134253743 - L2 LINE L2 -5 3267 3191 311 337 28 72 chr12 10031171 10031420 -134251069 + HAL1 LINE L1 48 285 -2222 2043 37 53 0 chr12 10031832 10032077 -134250412 - AluY SINE Alu -17 294 37 224 283 33 0 chr12 10032181 10032241 -134250248 + L2 LINE L2 3203 3264 -8 2096 119 0 3 chr12 10032360 10032653 -134249836 + AluSg SINE Alu 1 292 -18 1495 233 68 11 chr12 10032777 10033236 -134249253 - L1M4 LINE L1 -1570 4576 4092 234 0 0 0 chr12 10033395 10033421 -134249068 + (TA)n Simple_repeat Simple_repeat 2 27 0 2279 64 0 4 chr12 10033432 10033713 -134248776 - AluY SINE Alu -31 280 1 273 330 16 62 chr12 10034041 10034411 -134248078 - L1MEc LINE L1 -5451 1374 1022 1470 320 70 23 chr12 10034809 10035536 -134246953 - HAL1 LINE L1 -861 1646 856 2163 98 3 23 chr12 10035536 10035841 -134246648 - AluSx SINE Alu -13 299 1 1470 320 70 23 chr12 10035841 10036121 -134246368 - HAL1 LINE L1 -1651 856 591 3980 142 33 40 chr12 10036132 10037519 -134244970 - pTR5 LTR ERV1 0 2438 742 2291 228 66 27 chr12 10037756 10038318 -134244171 - MLT1E LTR MaLR -1 592 9 27 49 0 0 chr12 10038427 10038468 -134244021 + AT_rich Low_complexity Low_complexity 1 41 0 393 278 101 53 chr12 10038928 10039097 -134243392 - MIR SINE MIR -60 202 26 1161 243 116 47 chr12 10039468 10040065 -134242424 - L1ME3 LINE L1 -230 5932 5295 554 279 32 0 chr12 10040094 10040252 -134242237 - L1MEc LINE L1 -5727 815 653 866 217 73 80 chr12 10040254 10040568 -134241921 - L1MEc LINE L1 -5793 749 438 2115 114 0 0 chr12 10040737 10041018 -134241471 - AluSx SINE Alu -27 285 5 416 305 142 0 chr12 10041070 10041267 -134241222 + MIR SINE MIR 38 262 0 198 0 0 0 chr12 10041685 10041707 -134240782 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 865 189 0 0 chr12 10041707 10041855 -134240634 - FRAM SINE Alu -18 148 1 525 278 10 26 chr12 10042103 10042358 -134240131 - MER20 DNA MER1_type 0 219 1 1502 228 129 42 chr12 10042524 10042997 -134239492 - MER67D LTR ERV1 0 514 1 2072 137 0 0 chr12 10043037 10043336 -134239153 - AluSx SINE Alu -13 299 1 32 98 0 0 chr12 10043566 10043668 -134238821 + AT_rich Low_complexity Low_complexity 1 102 0 606 304 78 18 chr12 10043860 10044195 -134238294 + L1M4 LINE L1 4012 4366 -1780 896 185 98 5 chr12 10044214 10044398 -134238091 - MLT1E2 LTR MaLR -8 618 418 1793 156 131 0 chr12 10044398 10044750 -134237739 + MSTB LTR MaLR 1 398 -28 599 111 0 10 chr12 10044755 10044854 -134237635 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 1641 182 17 3 chr12 10044854 10045156 -134237333 - AluJb SINE Alu -4 308 3 341 286 31 0 chr12 10045197 10045295 -134237194 - MLT1E2 LTR MaLR -204 422 322 580 13 26 0 chr12 10045340 10045417 -134237072 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 286 265 61 0 chr12 10045440 10045538 -134236951 - L1ME3 LINE L1 -893 5253 5150 975 164 29 5 chr12 10045950 10046157 -134236332 - L1MA7 LINE L1 -1 6290 6079 2226 94 13 0 chr12 10046442 10046797 -134235692 + AluSx SINE Alu 1 359 0 473 303 81 30 chr12 10046803 10047199 -134235290 - L1ME4a LINE L1 -58 6063 5648 188 178 22 44 chr12 10048068 10048113 -134234376 - MIR SINE MIR -35 227 184 182 225 70 28 chr12 10048674 10048745 -134233744 - MER5C DNA MER1_type -177 147 74 2193 163 21 39 chr12 10049062 10049498 -134232991 - MSTA LTR MaLR 0 428 1 189 0 0 0 chr12 10052335 10052356 -134230133 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1718 164 0 18 chr12 10054172 10054453 -134228036 + AluJb SINE Alu 5 280 -32 219 36 0 0 chr12 10054453 10054481 -134228008 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2437 222 50 25 chr12 10054600 10055296 -134227193 + L1ME2 LINE L1 5458 6161 -3 2318 50 0 0 chr12 10056304 10056581 -134225908 - AluY SINE Alu -11 300 24 234 0 0 0 chr12 10056860 10056886 -134225603 + (TTA)n Simple_repeat Simple_repeat 2 27 0 299 342 25 0 chr12 10058662 10058782 -134223707 - L2 LINE L2 0 3272 3150 551 329 137 44 chr12 10059388 10060014 -134222475 + L2 LINE L2 2627 3313 0 190 398 82 25 chr12 10060144 10060340 -134222149 - L2 LINE L2 -229 3084 2878 2323 88 0 38 chr12 10060945 10061264 -134221225 - AluSq SINE Alu -6 307 1 391 266 43 125 chr12 10063248 10063552 -134218937 + L1M4 LINE L1 3333 3611 -2535 390 306 90 55 chr12 10063637 10064059 -134218430 + L1M4 LINE L1 3753 4189 -1957 256 235 25 6 chr12 10064090 10064143 -134218346 - L1MD3 LINE L1 -18 7977 7927 2167 122 3 0 chr12 10064143 10064454 -134218035 - AluSx SINE Alu 0 312 1 256 235 25 6 chr12 10064454 10064623 -134217866 - L1MD3 LINE L1 -68 7927 5997 1618 149 29 16 chr12 10064632 10064947 -134217542 - L1MD3 LINE L1 -762 5597 5279 273 272 88 72 chr12 10066592 10067205 -134215284 - L1ME LINE L1 -2499 3581 2959 895 269 5 0 chr12 10067220 10067421 -134215068 + MER58A DNA MER1_type 1 202 -22 358 250 70 6 chr12 10067452 10067608 -134214881 - L1ME LINE L1 -3128 2952 2787 1004 248 113 14 chr12 10067616 10067979 -134214510 - L1ME LINE L1 -3340 2740 2342 1319 227 35 38 chr12 10068092 10068431 -134214058 + MLT2B1 LTR ERVL 1 338 -182 188 35 35 0 chr12 10068580 10068609 -134213880 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 244 224 0 0 chr12 10068667 10068716 -134213773 - MER58A DNA MER1_type -37 70 22 287 85 21 0 chr12 10068747 10068794 -134213695 + (TA)n Simple_repeat Simple_repeat 1 48 0 334 230 125 46 chr12 10068822 10068974 -134213515 - L1ME LINE L1 -5590 480 317 332 83 0 0 chr12 10068981 10069020 -134213469 - MLT2B1 LTR ERVL 0 520 479 414 0 0 0 chr12 10069020 10069066 -134213423 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 910 324 68 13 chr12 10069168 10069548 -134212941 + LTR16B LTR ERVL 64 464 0 236 320 117 0 chr12 10070218 10070321 -134212168 - MLT1L LTR MaLR -171 444 330 263 397 13 13 chr12 10070519 10070675 -134211814 + MIR SINE MIR 102 257 -5 198 0 0 0 chr12 10071049 10071071 -134211418 + (A)n Simple_repeat Simple_repeat 1 22 0 353 314 7 50 chr12 10071342 10071482 -134211007 - L2 LINE L2 0 3313 3180 594 238 18 9 chr12 10071499 10071722 -134210767 - L1M4 LINE L1 -2875 3271 3047 3881 153 35 43 chr12 10071723 10072440 -134210049 - MER50 LTR ERV1 -23 711 1 1469 226 56 16 chr12 10072440 10072883 -134209606 - L1M4 LINE L1 -3096 3050 2590 721 212 191 11 chr12 10072885 10073156 -134209333 + MER4C LTR ERV1 1 419 -178 2498 57 3 0 chr12 10073178 10073477 -134209012 - AluY SINE Alu -11 300 1 859 179 17 6 chr12 10073495 10073668 -134208821 + MER4C LTR ERV1 274 448 -17 372 204 11 21 chr12 10073702 10073795 -134208694 + MER4C-int LTR ERV1 4 95 -6503 310 256 0 12 chr12 10073908 10073994 -134208495 + MER4C-int LTR ERV1 352 436 -6162 891 227 124 23 chr12 10074263 10074562 -134207927 + LTR49 LTR ERV1 263 591 -4 1156 195 58 11 chr12 10074567 10074830 -134207659 + LTR49-int LTR ERV1 3 626 -4591 308 191 63 0 chr12 10074837 10074900 -134207589 + LTR49-int LTR ERV1 1556 1622 -3258 * 977 244 42 23 chr12 10074892 10075185 -134207304 + MER4C-int LTR ERV1 986 1866 -3014 3485 109 6 17 chr12 10075188 10075719 -134206770 - L1PA15 LINE L1 -2 6163 5639 2123 137 20 19 chr12 10075720 10076118 -134206371 + MLT2A2 LTR ERVL 1 309 -144 396 167 0 0 chr12 10076117 10076177 -134206312 - AluS SINE Alu -243 60 1 * 8297 235 22 28 chr12 10076190 10079471 -134203018 - L1PA13 LINE L1 -2438 4359 1094 314 226 29 49 chr12 10079473 10079575 -134202914 - L1MC4 LINE L1 -1339 6703 6604 2383 75 3 31 chr12 10079612 10079932 -134202557 - AluY SINE Alu 0 311 1 830 242 16 5 chr12 10079990 10080176 -134202313 + MER4C-int LTR ERV1 1844 2031 -4300 3991 125 35 8 chr12 10080179 10080801 -134201688 - LTR9B LTR ERV1 0 644 6 978 222 89 89 chr12 10080806 10081151 -134201338 + MER4C-int LTR ERV1 769 1112 -5522 2294 84 3 7 chr12 10081151 10081461 -134201028 - AluSc SINE Alu 0 309 1 978 222 89 89 chr12 10081461 10081607 -134200882 + MER4C-int LTR ERV1 1112 3414 -3220 241 226 65 0 chr12 10081611 10081673 -134200816 + MER34C LTR ERV1 165 230 -355 1523 182 94 100 chr12 10081695 10082658 -134199831 + HUERS-P1 LTR ERV1 1100 3569 -2694 * 4367 152 39 50 chr12 10082655 10084009 -134198480 + HUERS-P1 LTR ERV1 4234 5560 -771 261 184 237 13 chr12 10084009 10084085 -134198404 + LTR37A LTR ERV1 4 96 -330 794 135 43 49 chr12 10084085 10084248 -134198241 + HUERS-P1 LTR ERV1 5638 5799 -532 300 27 0 0 chr12 10084265 10084302 -134198187 + (CA)n Simple_repeat Simple_repeat 1 37 0 814 249 10 10 chr12 10084463 10084660 -134197829 + HUERS-P1 LTR ERV1 6401 6597 -1 619 255 159 8 chr12 10084662 10084935 -134197554 + MER4C LTR ERV1 1 499 -186 501 232 15 71 chr12 10085024 10085222 -134197267 + MER4C LTR ERV1 276 462 -3 1041 250 114 38 chr12 10085232 10085612 -134196877 - L1M4 LINE L1 -3548 3096 2746 1292 184 90 18 chr12 10085612 10085889 -134196600 - AluJo SINE Alu -15 297 1 1041 250 114 38 chr12 10085889 10086573 -134195916 - L1M4 LINE L1 -3898 2746 1919 3861 181 25 5 chr12 10086576 10087660 -134194829 - L1P5 LINE L1 -516 5638 4537 3464 142 54 27 chr12 10087668 10088295 -134194194 + LTR9B LTR ERV1 1 644 0 1752 290 21 38 chr12 10088295 10088902 -134193587 - L1M4 LINE L1 -5936 606 10 194 312 112 69 chr12 10089359 10089702 -134192787 - L2 LINE L2 -710 2604 2242 570 29 0 0 chr12 10089702 10089770 -134192719 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 194 312 112 69 chr12 10089770 10089801 -134192688 - L2 LINE L2 -1072 2242 2214 918 286 135 11 chr12 10089900 10090264 -134192225 + LTR16A LTR ERVL 42 450 0 285 340 21 0 chr12 10091841 10091935 -134190554 + L2 LINE L2 1125 1220 -2094 850 316 217 9 chr12 10091940 10092617 -134189872 + L2 LINE L2 1836 2653 -661 558 242 61 30 chr12 10092662 10092860 -134189629 + L2 LINE L2 3106 3309 -4 391 318 7 20 chr12 10093710 10093858 -134188631 + L2 LINE L2 1879 2024 -1290 323 115 19 0 chr12 10094404 10094456 -134188033 - MADE1 DNA Mariner -27 53 1 26 0 0 0 chr12 10095330 10095356 -134187133 + AT_rich Low_complexity Low_complexity 1 26 0 203 184 0 0 chr12 10095987 10096025 -134186464 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 34 55 0 0 chr12 10097199 10097254 -134185235 + AT_rich Low_complexity Low_complexity 1 55 0 3252 162 11 30 chr12 10097255 10097693 -134184796 - L1MC1 LINE L1 -465 5868 5423 1452 152 8 19 chr12 10097693 10097950 -134184539 - L1PB3 LINE L1 -7 6147 5894 3252 162 11 30 chr12 10097950 10098211 -134184278 - L1MC1 LINE L1 -910 5423 5182 6731 78 3 3 chr12 10098211 10099354 -134183135 - L1PA8 LINE L1 -5 6167 5024 3252 162 11 30 chr12 10099354 10099373 -134183116 - L1MC1 LINE L1 -1151 5182 5164 * 9375 111 20 0 chr12 10099357 10100747 -134181742 + L1P LINE L1 3634 5051 -1095 1486 257 21 50 chr12 10100745 10101364 -134181125 - L1MC1 LINE L1 -945 5201 4601 * 1564 204 19 11 chr12 10101361 10102055 -134180434 - L1M4 LINE L1 -581 5672 4971 1285 265 63 11 chr12 10102063 10102520 -134179969 - L1M4 LINE L1 -2045 4170 3690 1100 216 48 128 chr12 10102528 10102926 -134179563 - MLT1A2 LTR MaLR -8 366 1 1889 244 33 36 chr12 10102927 10103808 -134178681 - L1M4 LINE L1 -2523 3692 2815 486 292 71 28 chr12 10103842 10104047 -134178442 - L1M4 LINE L1 -3856 2359 2164 1615 194 16 16 chr12 10104047 10104357 -134178132 - AluJb SINE Alu -2 310 1 486 292 71 28 chr12 10104357 10104759 -134177730 - L1M4 LINE L1 -4051 2164 1771 481 306 44 55 chr12 10104811 10105225 -134177264 - L1M4c LINE L1 -4416 2147 1596 489 307 5 48 chr12 10105484 10105673 -134176816 - L1ME3 LINE L1 0 6162 5982 374 277 215 30 chr12 10106308 10106680 -134175809 + L3 LINE CR1 586 1026 -551 258 375 42 7 chr12 10106871 10107015 -134175474 + L3 LINE CR1 1192 1340 -237 1184 263 44 54 chr12 10109087 10109459 -134173030 - LTR51 LTR ERV1 -47 624 255 2509 62 0 0 chr12 10109459 10109766 -134172723 + AluY SINE Alu 1 307 -4 1184 263 44 54 chr12 10109766 10109800 -134172689 - LTR51 LTR ERV1 -416 255 222 432 225 22 124 chr12 10110315 10110493 -134171996 + LTR49-int LTR ERV1 2278 2437 -3894 31 0 0 0 chr12 10110499 10110530 -134171959 + AT_rich Low_complexity Low_complexity 1 31 0 731 0 0 0 chr12 10110530 10110614 -134171875 - L1PA3 LINE L1 -4 6151 6068 776 178 19 13 chr12 10110696 10110853 -134171636 - FRAM SINE Alu -25 151 1 2178 242 87 73 chr12 10110942 10112162 -134170327 + L1M2 LINE L1 3 1239 -5610 1698 138 68 31 chr12 10112165 10112519 -134169970 + L1MA4A LINE L1 5937 6303 0 695 359 41 38 chr12 10113027 10113192 -134169297 - ERVL LTR ERVL -570 5194 5031 2217 110 7 0 chr12 10113192 10113492 -134168997 - AluSp SINE Alu -11 302 1 695 359 41 38 chr12 10113492 10113911 -134168578 - ERVL LTR ERVL -733 5031 4608 1875 71 37 37 chr12 10114101 10114369 -134168120 - AluY SINE Alu -4 307 40 200 206 0 0 chr12 10115374 10115408 -134167081 + (CAT)n Simple_repeat Simple_repeat 2 35 0 700 328 54 8 chr12 10115776 10116035 -134166454 - ERVL LTR ERVL -1176 4588 4318 8381 244 32 25 chr12 10116196 10119935 -134162554 + L1PA13 LINE L1 12 2971 -4610 14267 195 18 32 chr12 10119944 10123255 -134159234 + L1PA13 LINE L1 3524 6789 -795 1240 116 0 0 chr12 10123492 10123673 -134158816 - L1PA13 LINE L1 -5 6158 5978 4837 111 23 3 chr12 10123673 10124410 -134158079 + L1PA13 LINE L1 6847 7598 -3 2315 98 0 3 chr12 10125460 10125756 -134156733 - AluSq SINE Alu -18 295 1 253 304 9 9 chr12 10126466 10126578 -134155911 - L1MC4a LINE L1 -1288 6520 6409 1645 174 3 23 chr12 10126846 10127151 -134155338 + AluJo SINE Alu 1 299 -13 225 198 11 55 chr12 10127461 10127552 -134154937 + T-rich Low_complexity Low_complexity 4 90 0 380 257 148 27 chr12 10127679 10128209 -134154280 - L1M4 LINE L1 -1882 4264 3661 675 84 0 0 chr12 10128335 10128430 -134154059 - AluSg/x SINE Alu -1 311 217 26 30 0 0 chr12 10128507 10128540 -134153949 + AT_rich Low_complexity Low_complexity 1 33 0 413 65 0 16 chr12 10130019 10130081 -134152408 + (TG)n Simple_repeat Simple_repeat 1 61 0 359 276 61 0 chr12 10130404 10130502 -134151987 + L2 LINE L2 3210 3313 0 204 258 0 32 chr12 10130993 10131055 -134151434 - L2 LINE L2 -64 3208 3149 22 56 0 0 chr12 10131259 10131295 -134151194 + AT_rich Low_complexity Low_complexity 1 36 0 2945 76 2 19 chr12 10131295 10131714 -134150775 - LTR7 LTR ERV1 -38 412 1 13097 84 5 11 chr12 10131715 10133558 -134148931 - HERVH LTR ERV1 -1 7712 5881 2555 71 3 0 chr12 10133557 10133896 -134148593 + HERVH LTR ERV1 5526 5865 -1848 * 1384 157 137 26 chr12 10134345 10134689 -134147800 - L1MB5 LINE L1 -10 6164 5783 340 274 0 21 chr12 10134700 10134795 -134147694 - L1MC4 LINE L1 -1336 6706 6614 1153 189 0 27 chr12 10134825 10135047 -134147442 - L1M4 LINE L1 -5827 715 500 261 262 48 24 chr12 10136205 10136289 -134146200 + HERVL74 LTR ERVL 1821 1906 -3779 595 210 24 16 chr12 10136303 10136427 -134146062 + MLT1A2 LTR MaLR 1 125 -249 1116 225 92 23 chr12 10136427 10136773 -134145716 - MLT1A2 LTR MaLR -1 373 4 228 234 0 0 chr12 10136776 10136823 -134145666 - MLT1A2-int LTR MaLR 0 1735 1689 3833 184 64 21 chr12 10136851 10137729 -134144760 + L1MB7 LINE L1 5239 6153 -31 228 73 0 24 chr12 10138073 10138114 -134144375 - L1PA13 LINE L1 -732 5436 5397 5065 89 14 18 chr12 10138114 10138848 -134143641 + L1PA13 LINE L1 5430 6160 -3 484 210 30 0 chr12 10139402 10139502 -134142987 - MER96B DNA MER1_type? -312 105 3 37 0 0 0 chr12 10140265 10140302 -134142187 + AT_rich Low_complexity Low_complexity 1 37 0 1738 241 115 2 chr12 10140339 10140791 -134141698 + MLT1D LTR MaLR 3 505 0 23 54 0 0 chr12 10141267 10141304 -134141185 + AT_rich Low_complexity Low_complexity 1 37 0 191 339 74 25 chr12 10141372 10141493 -134140996 - MIR SINE MIR -44 218 92 25315 112 14 90 chr12 10142554 10144711 -134137778 - L1P LINE L1 -1660 4486 2898 198 0 0 0 chr12 10144711 10144733 -134137756 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 25315 112 14 90 chr12 10144733 10147417 -134135072 - L1P LINE L1 -3248 2898 12 1759 170 50 0 chr12 10147429 10147712 -134134777 - AluJb SINE Alu -15 297 1 1292 148 24 77 chr12 10147722 10148017 -134134472 + MER67C LTR ERV1 40 343 -246 2050 28 0 8 chr12 10148028 10148278 -134134211 - L1PA2 LINE L1 0 6155 5908 710 263 34 14 chr12 10148296 10148505 -134133984 - MER34 LTR ERV1 -294 248 36 1482 44 59 39 chr12 10148752 10148955 -134133534 - AluY SINE Alu -104 207 1 2631 153 9 19 chr12 10149577 10150042 -134132447 - MER65C LTR ERV1 -1 460 1 275 152 0 0 chr12 10150051 10150097 -134132392 + MER67C LTR ERV1 356 401 -309 325 309 86 0 chr12 10150111 10150250 -134132239 + MER67D LTR ERV1 356 506 -8 286 257 157 14 chr12 10150278 10150418 -134132071 - L1MC4 LINE L1 -969 7073 6914 410 66 33 0 chr12 10150432 10150493 -134131996 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 540 252 50 64 chr12 10151031 10151249 -134131240 + MER20 DNA MER1_type 1 215 -4 193 377 44 26 chr12 10151964 10152078 -134130411 + MIR3 SINE MIR 53 168 -40 230 365 40 24 chr12 10154271 10154397 -134128092 - L2 LINE L2 -4 3268 3141 221 317 35 56 chr12 10154604 10154746 -134127743 - L3 LINE CR1 -294 1283 1145 340 257 69 20 chr12 10155467 10155568 -134126921 + MLT2E LTR ERVL 54 159 -469 281 239 0 11 chr12 10156048 10156140 -134126349 + (TA)n Simple_repeat Simple_repeat 2 92 0 413 264 74 63 chr12 10156491 10156775 -134125714 + L1ME3A LINE L1 2964 3250 -2896 1566 295 108 39 chr12 10156827 10159041 -134123448 + L1ME3A LINE L1 3389 5759 -411 999 211 84 39 chr12 10159081 10159389 -134123100 + MER58B DNA MER1_type 16 337 -4 288 270 18 36 chr12 10159404 10159515 -134122974 + L1ME3A LINE L1 5816 5924 -246 328 274 0 9 chr12 10159558 10159671 -134122818 + L1ME3A LINE L1 5912 6023 -147 4393 200 62 19 chr12 10159979 10160891 -134121598 + L1M3f LINE L1 1 952 -4376 671 341 21 39 chr12 10210903 10211034 -134071455 + L2 LINE L2 2838 2970 -343 2384 54 0 14 chr12 10211034 10211331 -134071158 - AluY SINE Alu -18 293 1 671 341 21 39 chr12 10211331 10211533 -134070956 + L2 LINE L2 2970 3165 -148 516 11 46 172 chr12 10211534 10211621 -134070868 - MADE1 DNA Mariner 0 80 5 310 267 68 48 chr12 10211662 10211808 -134070681 + L2 LINE L2 3156 3304 -9 5508 142 38 13 chr12 10212172 10213468 -134069021 - L1PB3 LINE L1 -1 6869 5540 2103 142 0 0 chr12 10215040 10215349 -134067140 - AluSx SINE Alu -1 311 3 7201 192 13 25 chr12 10215355 10216413 -134066076 - L1PB3 LINE L1 -1311 5551 4518 2150 147 0 0 chr12 10216413 10216713 -134065776 - AluSx SINE Alu -11 301 2 7201 192 13 25 chr12 10216713 10217221 -134065268 - L1PB3 LINE L1 -2344 4518 4005 242 259 12 25 chr12 10217325 10217406 -134065083 - MARNA DNA Mariner -58 528 449 25460 55 7 3 chr12 10217468 10221342 -134061147 - L1PA6 LINE L1 0 6154 2268 6110 199 68 24 chr12 10221342 10221700 -134060789 - L1PB3 LINE L1 -3815 3047 2706 2208 118 0 10 chr12 10221700 10221871 -134060618 - AluSg SINE Alu -8 302 134 2139 132 3 3 chr12 10221871 10222181 -134060308 - AluSq SINE Alu -3 310 1 2208 118 0 10 chr12 10222181 10222314 -134060175 - AluSg SINE Alu -176 134 1 6110 199 68 24 chr12 10222314 10225696 -134056793 - L1PB3 LINE L1 -4156 2706 78 2354 95 3 0 chr12 10225696 10226000 -134056489 - AluSx SINE Alu -7 305 1 6110 199 68 24 chr12 10226000 10226079 -134056410 - L1PB3 LINE L1 -6784 78 4 22 70 0 0 chr12 10226079 10226122 -134056367 + AT_rich Low_complexity Low_complexity 1 43 0 193 370 28 0 chr12 10226316 10226424 -134056065 - MIR3 SINE MIR -29 179 69 1067 224 76 59 chr12 10226431 10226788 -134055701 + MLT1A1 LTR MaLR 1 363 -2 245 271 28 75 chr12 10227945 10228052 -134054437 + MIR SINE MIR 41 142 -66 269 236 14 14 chr12 10228062 10228134 -134054355 - MIR SINE MIR -7 255 184 23 33 0 0 chr12 10229205 10229235 -134053254 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr12 10231314 10231350 -134051139 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr12 10231448 10231472 -134051017 + AT_rich Low_complexity Low_complexity 1 24 0 2533 54 0 0 chr12 10232096 10232393 -134050096 - AluY SINE Alu -14 297 1 2242 101 0 10 chr12 10232604 10232902 -134049587 + AluSx SINE Alu 1 295 -17 2309 90 0 0 chr12 10233939 10234239 -134048250 + AluSx SINE Alu 1 300 -12 1143 103 0 0 chr12 10234239 10234394 -134048095 + AluSg/x SINE Alu 134 288 -24 948 100 14 14 chr12 10234605 10234745 -134047744 + AluSg/x SINE Alu 167 306 -4 1911 163 3 10 chr12 10234888 10235201 -134047288 + AluSx SINE Alu 2 312 0 2270 115 3 0 chr12 10235204 10235516 -134046973 + AluSq SINE Alu 1 313 0 1533 85 0 15 chr12 10236154 10236354 -134046135 + AluSc SINE Alu 1 197 -112 395 85 32 9 chr12 10236354 10236415 -134046074 + AluSc SINE Alu 236 297 -2 27 29 0 0 chr12 10237234 10237268 -134045221 + AT_rich Low_complexity Low_complexity 1 34 0 2319 108 0 0 chr12 10237447 10237752 -134044737 - AluSx SINE Alu -7 305 1 228 24 73 0 chr12 10237768 10237809 -134044680 + A-rich Low_complexity Low_complexity 2 45 0 379 299 68 14 chr12 10238276 10238423 -134044066 - MIR SINE MIR -76 186 32 312 247 106 0 chr12 10238970 10239055 -134043434 - MIR SINE MIR -95 167 74 2020 100 38 0 chr12 10239450 10239739 -134042750 - AluSg SINE Alu -10 300 1 521 320 20 10 chr12 10240581 10240781 -134041708 + MIR SINE MIR 57 258 -4 240 321 158 6 chr12 10241638 10241803 -134040686 + MIR SINE MIR 2 191 -71 318 193 0 48 chr12 10242182 10242265 -134040224 + L1MC5 LINE L1 7707 7785 -176 1656 146 61 17 chr12 10242456 10242751 -134039738 + AluSx SINE Alu 1 308 -4 1041 86 6 19 chr12 10242823 10242985 -134039504 - L1MB3 LINE L1 -18 6165 6006 2155 91 3 7 chr12 10243007 10243320 -134039169 - AluSq SINE Alu 0 312 1 880 199 51 74 chr12 10243365 10243676 -134038813 + MLT2D LTR ERVL 92 395 -19 1119 219 22 4 chr12 10243690 10243959 -134038530 - L1MB3 LINE L1 -172 6011 5738 524 162 153 28 chr12 10244029 10244175 -134038314 + MLT1E LTR MaLR 11 174 -419 891 212 37 49 chr12 10244265 10244510 -134037979 + MLT1E LTR MaLR 336 577 -16 870 132 0 0 chr12 10246222 10246351 -134036138 - AluSg/x SINE Alu -20 290 162 2021 134 7 10 chr12 10246988 10247295 -134035194 + AluSx SINE Alu 1 306 -6 1809 135 60 0 chr12 10247298 10247589 -134034900 + AluSx SINE Alu 5 311 0 308 323 71 32 chr12 10247712 10247867 -134034622 + MIR SINE MIR 59 219 -43 22 0 0 0 chr12 10248188 10248210 -134034279 + AT_rich Low_complexity Low_complexity 1 22 0 239 286 114 21 chr12 10248324 10248464 -134034025 + L2 LINE L2 3161 3313 0 2017 149 3 0 chr12 10248618 10248913 -134033576 + AluSx SINE Alu 1 296 -16 22 94 0 0 chr12 10249415 10249479 -134033010 + AT_rich Low_complexity Low_complexity 1 64 0 2194 128 3 0 chr12 10249708 10250012 -134032477 + AluSx SINE Alu 1 305 -7 622 339 45 4 chr12 10250497 10250739 -134031750 - MIR SINE MIR -3 259 8 454 250 160 6 chr12 10250786 10250942 -134031547 - MER58C DNA MER1_type 0 215 36 2442 285 60 15 chr12 10251349 10252433 -134030056 + L1MEc LINE L1 248 1380 -5227 255 184 0 48 chr12 10252449 10252519 -134029970 + GA-rich Low_complexity Low_complexity 1 73 -376 2368 69 23 3 chr12 10252519 10252822 -134029667 + AluY SINE Alu 1 309 -2 255 184 0 48 chr12 10252822 10252921 -134029568 + GA-rich Low_complexity Low_complexity 73 449 0 480 258 103 27 chr12 10253005 10253374 -134029115 + L1MEc LINE L1 1288 1684 -4742 2439 77 3 3 chr12 10253439 10253750 -134028739 + AluY SINE Alu 1 311 0 848 247 74 19 chr12 10253755 10254280 -134028209 + L1MEc LINE L1 2384 2896 -3530 1922 116 43 0 chr12 10254282 10254559 -134027930 + AluSq SINE Alu 1 289 -24 924 112 62 12 chr12 10254572 10254733 -134027756 + AluSg/x SINE Alu 133 301 -9 1585 231 64 6 chr12 10254780 10255296 -134027193 + L1MEc LINE L1 2935 3480 -2946 5884 181 12 23 chr12 10255312 10256203 -134026286 - L1PA16 LINE L1 -9 6157 5257 2393 110 0 0 chr12 10256203 10256512 -134025977 - AluSq SINE Alu -4 309 1 5884 181 12 23 chr12 10256512 10258014 -134024475 - L1PA16 LINE L1 -909 5257 3775 848 161 8 0 chr12 10258027 10258157 -134024332 - FLAM_C SINE Alu -12 131 1 724 174 128 0 chr12 10258157 10258329 -134024160 - L1 LINE L1 -2350 3796 3603 892 298 73 23 chr12 10258477 10258927 -134023562 + L2 LINE L2 2783 3251 -62 2338 99 0 6 chr12 10258984 10259297 -134023192 + AluSp SINE Alu 1 311 -2 1691 178 6 22 chr12 10260010 10260325 -134022164 - AluSx SINE Alu -2 310 1 206 233 55 14 chr12 10260331 10260404 -134022085 + (TTTA)n Simple_repeat Simple_repeat 4 79 0 1875 98 4 4 chr12 10260553 10260819 -134021670 - L1PB1 LINE L1 -1 6150 5885 2162 100 9 38 chr12 10260969 10261289 -134021200 - AluSp SINE Alu -2 311 1 2171 144 0 3 chr12 10261423 10261736 -134020753 - AluSq SINE Alu -1 312 1 336 206 112 9 chr12 10262195 10262302 -134020187 - MER39 LTR ERV1 0 707 590 806 181 197 24 chr12 10262304 10262553 -134019936 + MER39 LTR ERV1 415 706 -1 538 223 106 64 chr12 10262554 10262812 -134019677 - MER39 LTR ERV1 -223 484 8 1186 233 37 64 chr12 10263005 10263199 -134019290 + MER67B LTR ERV1 3 201 -479 2427 79 0 0 chr12 10263199 10263503 -134018986 + AluY SINE Alu 1 304 -7 1186 233 37 64 chr12 10263503 10263565 -134018924 + MER67B LTR ERV1 201 263 -417 2377 80 3 6 chr12 10263565 10263876 -134018613 + AluSp SINE Alu 1 310 -3 1186 233 37 64 chr12 10263876 10264130 -134018359 + MER67B LTR ERV1 263 398 -282 505 220 91 32 chr12 10264104 10264327 -134018162 + MER67A LTR ERV1 273 543 0 * 500 298 68 40 chr12 10264555 10264803 -134017686 + MIR SINE MIR 2 256 -6 2290 118 0 6 chr12 10265613 10265927 -134016562 + AluSx SINE Alu 1 312 0 482 235 92 46 chr12 10266820 10266973 -134015516 - MIR SINE MIR -23 239 80 360 0 0 0 chr12 10267283 10267323 -134015166 + (TG)n Simple_repeat Simple_repeat 2 41 0 1110 137 17 112 chr12 10267357 10267598 -134014891 - AluJo SINE Alu -94 218 1 662 301 15 50 chr12 10267806 10268068 -134014421 - MIR SINE MIR -2 260 8 194 250 0 0 chr12 10268395 10268447 -134014042 - L2 LINE L2 0 3313 3262 189 107 0 0 chr12 10268588 10268616 -134013873 + (T)n Simple_repeat Simple_repeat 1 28 0 2526 76 3 0 chr12 10270582 10270886 -134011603 - AluSq SINE Alu -8 305 1 2016 118 0 68 chr12 10271004 10271175 -134011314 - AluSx SINE Alu -10 302 162 2508 50 3 0 chr12 10271175 10271474 -134011015 - AluY SINE Alu -11 300 1 2016 118 0 68 chr12 10271474 10271624 -134010865 - AluSx SINE Alu -150 162 3 264 185 0 0 chr12 10271630 10271684 -134010805 + CT-rich Low_complexity Low_complexity 1 54 0 * 345 47 0 0 chr12 10271677 10271720 -134010769 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1645 136 100 0 chr12 10271726 10272006 -134010483 - AluSx SINE Alu -4 308 1 2003 143 0 13 chr12 10272085 10272392 -134010097 - AluSx SINE Alu -9 303 1 1828 135 10 34 chr12 10272480 10272601 -134009888 + AluSg SINE Alu 3 125 -185 186 43 0 0 chr12 10272601 10272624 -134009865 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1828 135 10 34 chr12 10272624 10272798 -134009691 + AluSg SINE Alu 125 291 -19 2221 106 3 3 chr12 10272809 10273110 -134009379 + AluSg1 SINE Alu 1 301 -8 38 22 0 0 chr12 10273892 10273937 -134008552 + AT_rich Low_complexity Low_complexity 1 45 0 32 0 0 0 chr12 10274307 10274339 -134008150 + AT_rich Low_complexity Low_complexity 1 32 0 193 284 174 37 chr12 10274961 10275070 -134007419 + MIR SINE MIR 3 126 -136 470 265 43 16 chr12 10275235 10275379 -134007110 + MIR SINE MIR 68 212 -50 200 214 143 0 chr12 10275923 10275979 -134006510 + MIR SINE MIR 57 120 -142 201 211 0 0 chr12 10276674 10276726 -134005763 + GA-rich Low_complexity Low_complexity 1 52 0 285 98 0 0 chr12 10277019 10277060 -134005429 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 1513 149 0 131 chr12 10277065 10277393 -134005096 - AluJb SINE Alu -16 286 2 277 295 78 36 chr12 10277605 10277798 -134004691 - L2 LINE L2 0 3313 3113 24 53 0 0 chr12 10278285 10278323 -134004166 + AT_rich Low_complexity Low_complexity 1 38 0 303 314 81 8 chr12 10278328 10278452 -134004037 - L2 LINE L2 -14 3299 3167 193 337 145 40 chr12 10278561 10278810 -134003679 - L2 LINE L2 -353 2961 2687 1595 122 7 52 chr12 10279052 10279323 -134003166 + AluJb SINE Alu 1 259 -53 23 33 0 0 chr12 10280745 10280775 -134001714 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr12 10281737 10281760 -134000729 + AT_rich Low_complexity Low_complexity 1 23 0 14700 149 51 29 chr12 10281866 10282307 -134000182 - L1PBa LINE L1 -3646 3216 2786 423 0 0 0 chr12 10282307 10282354 -134000135 + (TG)n Simple_repeat Simple_repeat 2 48 0 14700 149 51 29 chr12 10282354 10282698 -133999791 - L1PBa LINE L1 -4076 2786 2451 2435 93 0 0 chr12 10282698 10283009 -133999480 - AluY SINE Alu 0 311 1 14700 149 51 29 chr12 10283009 10283129 -133999360 - L1PBa LINE L1 -4411 2451 2335 898 115 8 184 chr12 10283129 10283363 -133999126 - 7SK RNA RNA 0 193 1 14700 149 51 29 chr12 10283363 10283777 -133998712 - L1PBa LINE L1 -4527 2335 1932 2093 138 0 13 chr12 10283777 10284081 -133998408 + AluSx SINE Alu 1 300 -12 14700 149 51 29 chr12 10284081 10285915 -133996574 - L1PBa LINE L1 -4930 1932 2 217 313 9 71 chr12 10285951 10286063 -133996426 - MIR SINE MIR -157 105 1 968 219 71 6 chr12 10286431 10286769 -133995720 - L1 LINE L1 -2652 3494 3135 1221 128 0 0 chr12 10286772 10286944 -133995545 - AluSg/x SINE Alu 0 312 141 2200 121 0 3 chr12 10286951 10287248 -133995241 - AluSx SINE Alu -16 296 1 4261 230 50 26 chr12 10287252 10287766 -133994723 - L1PA12 LINE L1 -4002 3582 3082 2175 107 13 0 chr12 10287766 10288064 -133994425 - AluSq SINE Alu -11 302 1 4261 230 50 26 chr12 10288064 10288424 -133994065 - L1PA12 LINE L1 -4502 3082 2732 2031 126 0 7 chr12 10288424 10288737 -133993752 + AluSx SINE Alu 1 311 0 4261 230 50 26 chr12 10288737 10289166 -133993323 - L1PA12 LINE L1 -4852 2732 2244 403 305 91 85 chr12 10289590 10290108 -133992381 - L1PA12 LINE L1 -6130 1444 924 3948 240 85 43 chr12 10290157 10290423 -133992066 + L1ME1 LINE L1 3193 3447 -2719 2309 74 7 0 chr12 10290423 10290722 -133991767 + AluSg SINE Alu 1 301 -9 3948 240 85 43 chr12 10290722 10290931 -133991558 + L1ME1 LINE L1 3447 3646 -2520 2263 98 3 0 chr12 10290931 10291228 -133991261 + AluSx SINE Alu 1 298 -14 1539 186 0 40 chr12 10291233 10291534 -133990955 + AluJb SINE Alu 1 289 -23 3948 240 85 43 chr12 10291534 10292995 -133989494 + L1ME1 LINE L1 3649 5048 -1118 2170 102 24 3 chr12 10292995 10293288 -133989201 + AluSx SINE Alu 1 299 -13 3948 240 85 43 chr12 10293288 10293466 -133989023 + L1ME1 LINE L1 5048 5217 -949 2241 100 0 0 chr12 10293466 10293757 -133988732 + AluSq SINE Alu 2 292 -21 3948 240 85 43 chr12 10293757 10294485 -133988004 + L1ME1 LINE L1 5217 6161 -5 237 98 0 0 chr12 10295028 10295069 -133987420 + (TG)n Simple_repeat Simple_repeat 2 42 0 385 132 440 0 chr12 10296789 10296880 -133985609 - AluYb8 SINE Alu -177 131 1 283 234 109 0 chr12 10297245 10297309 -133985180 + MER33 DNA MER1_type 2 72 -252 847 129 0 0 chr12 10297332 10297448 -133985041 - FLAM_C SINE Alu -27 116 1 211 211 39 39 chr12 10297800 10297852 -133984637 - L2 LINE L2 -79 3234 3183 2085 153 113 8 chr12 10297888 10298279 -133984210 - MSTB1 LTR MaLR 0 432 1 375 302 9 0 chr12 10298279 10298385 -133984104 - MER81 DNA DNA -7 107 1 859 330 145 22 chr12 10298386 10299109 -133983380 - L2 LINE L2 -157 3156 2347 248 184 0 0 chr12 10299580 10299618 -133982871 - Alu SINE Alu -21 281 244 194 155 35 0 chr12 10299619 10299677 -133982812 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 287 238 0 0 chr12 10300115 10300178 -133982311 - MER117 DNA MER1_type -91 106 44 195 378 25 17 chr12 10300210 10300329 -133982160 - MIR SINE MIR -6 256 137 180 0 0 0 chr12 10300494 10300514 -133981975 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 213 395 0 0 chr12 10301119 10301195 -133981294 + L2 LINE L2 3181 3256 -16 22 70 0 0 chr12 10302783 10302826 -133979663 + AT_rich Low_complexity Low_complexity 1 43 0 580 110 0 22 chr12 10302826 10302917 -133979572 + AluJb SINE Alu 192 280 -32 1612 201 0 3 chr12 10303906 10304195 -133978294 - AluJb SINE Alu -24 288 1 191 296 0 0 chr12 10304195 10304239 -133978250 - L2 LINE L2 -92 3180 3137 293 47 23 0 chr12 10304314 10304357 -133978132 + (GA)n Simple_repeat Simple_repeat 1 44 0 234 267 0 89 chr12 10304369 10304470 -133978019 - MIR SINE MIR -76 132 41 2335 166 39 12 chr12 10304603 10305018 -133977471 - MSTB LTR MaLR 0 426 1 229 347 66 0 chr12 10305085 10305206 -133977283 - MIR SINE MIR -37 225 97 192 280 103 19 chr12 10307327 10307434 -133975055 + MIR SINE MIR 91 206 -56 2202 162 10 12 chr12 10307551 10307952 -133974537 - MER57A LTR ERV1 0 403 4 219 231 0 19 chr12 10310094 10310146 -133972343 - L2 LINE L2 -8 3305 3255 379 246 87 14 chr12 10310482 10310620 -133971869 - MIR SINE MIR -6 256 109 29 0 0 0 chr12 10310975 10311004 -133971485 + AT_rich Low_complexity Low_complexity 1 29 0 2009 129 26 3 chr12 10312958 10313260 -133969229 - AluSq SINE Alu -4 309 1 264 208 31 31 chr12 10316221 10316317 -133966172 - L1MC4a LINE L1 -1884 5924 5829 * 4309 189 22 3 chr12 10316316 10317240 -133965249 - L1MD1 LINE L1 -114 6128 5188 639 130 148 0 chr12 10317245 10317353 -133965136 - AluJb SINE Alu -188 124 1 1042 261 54 39 chr12 10317361 10317843 -133964646 - L1MD1 LINE L1 -943 5203 4715 1735 130 30 47 chr12 10318149 10318450 -133964039 + AluSx SINE Alu 1 296 -16 487 325 35 43 chr12 10319170 10319515 -133962974 - L1ME4a LINE L1 -36 6085 5744 28 29 0 0 chr12 10319634 10319669 -133962820 + AT_rich Low_complexity Low_complexity 1 35 0 606 102 61 0 chr12 10320455 10320553 -133961936 - L1PA16 LINE L1 -9 6157 6054 227 208 19 19 chr12 10320714 10320767 -133961722 - L1ME4a LINE L1 -2143 5665 5613 2380 93 0 6 chr12 10320909 10321220 -133961269 - AluSx SINE Alu -3 309 1 25 0 0 0 chr12 10322127 10322152 -133960337 + AT_rich Low_complexity Low_complexity 1 25 0 1470 214 120 37 chr12 10323317 10323775 -133958714 + MLT1D LTR MaLR 1 496 -9 404 285 108 19 chr12 10324816 10324974 -133957515 - MLT1J2 LTR MaLR 0 450 279 468 231 26 0 chr12 10325391 10325508 -133956981 - LTR33 LTR ERVL -2 519 400 323 243 97 56 chr12 10325603 10325747 -133956742 - LTR33 LTR ERVL -369 152 3 26 0 0 0 chr12 10325747 10325773 -133956716 + AT_rich Low_complexity Low_complexity 1 26 0 2352 88 0 0 chr12 10325775 10326072 -133956417 - AluSq SINE Alu -16 297 1 251 279 39 29 chr12 10326435 10326539 -133955950 - MIR SINE MIR -11 251 147 12610 141 17 13 chr12 10326549 10328611 -133953878 + Tigger1 DNA MER2_type 1 2070 -348 617 94 31 3 chr12 10328611 10328739 -133953750 - AluSc SINE Alu -14 295 132 2789 7 0 3 chr12 10328739 10329044 -133953445 - AluYb8 SINE Alu -14 304 1 1975 157 16 30 chr12 10329044 10329407 -133953082 + Tigger1 DNA MER2_type 2061 2418 0 456 323 40 20 chr12 10329971 10330172 -133952317 - MIR SINE MIR 0 262 58 245 374 0 0 chr12 10330684 10330767 -133951722 - L2 LINE L2 -30 3242 3160 183 354 63 0 chr12 10330834 10330913 -133951576 - MIR SINE MIR -111 151 68 808 345 29 31 chr12 10332116 10332563 -133949926 - L2 LINE L2 -34 3279 2834 23 0 0 0 chr12 10332624 10332647 -133949842 + AT_rich Low_complexity Low_complexity 1 23 0 2020 115 4 0 chr12 10333016 10333294 -133949195 + AluSc SINE Alu 1 279 -30 204 40 0 0 chr12 10333304 10333329 -133949160 + (TA)n Simple_repeat Simple_repeat 2 26 0 252 0 0 0 chr12 10333353 10333381 -133949108 + (CA)n Simple_repeat Simple_repeat 2 29 0 459 263 102 44 chr12 10334287 10334492 -133947997 + L2 LINE L2 3096 3312 -1 2042 112 6 16 chr12 10335720 10336032 -133946457 - AluSx SINE Alu -3 309 1 2459 64 0 0 chr12 10336243 10336540 -133945949 + AluY SINE Alu 1 297 -14 1756 176 0 0 chr12 10336874 10337179 -133945310 + AluSx SINE Alu 5 309 0 4066 160 79 31 chr12 10339237 10340062 -133942427 + MER6 DNA MER2_type 2 865 0 193 103 0 0 chr12 10340067 10340096 -133942393 + L2 LINE L2 3285 3313 0 1536 181 36 23 chr12 10341089 10341393 -133941096 + AluJb SINE Alu 3 310 -2 4057 148 57 22 chr12 10341585 10342344 -133940145 + LTR1 LTR ERV1 1 785 0 453 291 33 4 chr12 10342764 10342925 -133939564 - MIR SINE MIR -68 140 2 1134 280 82 102 chr12 10343332 10344301 -133938188 - L2 LINE L2 -778 2536 1588 2462 65 0 3 chr12 10344301 10344608 -133937881 + AluY SINE Alu 1 306 -5 1134 280 82 102 chr12 10344608 10344664 -133937825 - L2 LINE L2 -1726 1588 1532 529 128 12 0 chr12 10344666 10344752 -133937737 - MER52C LTR ERV1 0 1278 1192 1397 170 8 0 chr12 10344753 10344994 -133937495 - L1MC/D LINE L1 -713 5631 5389 473 207 0 0 chr12 10345269 10345351 -133937138 - AluJ/FLAM SINE Alu -228 84 3 362 211 55 23 chr12 10346302 10346430 -133936059 + MER52C LTR ERV1 354 485 -793 1663 195 69 54 chr12 10346432 10346510 -133935979 + L1MC2 LINE L1 5580 5655 -689 3520 113 4 4 chr12 10346510 10347021 -133935468 - MER9 LTR ERVK 0 511 1 1663 195 69 54 chr12 10347021 10347389 -133935100 + L1MC2 LINE L1 5655 6033 -311 306 0 0 0 chr12 10347688 10347722 -133934767 + (TA)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr12 10347721 10347741 -133934748 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 316 159 0 72 chr12 10347745 10347814 -133934675 - L1M3 LINE L1 -392 5776 5713 284 266 53 0 chr12 10348237 10348331 -133934158 - MIR SINE MIR -84 178 80 667 167 10 0 chr12 10349238 10349439 -133933050 + GA-rich Low_complexity Low_complexity 1 203 0 207 0 0 0 chr12 10349439 10349462 -133933027 + (CAGG)n Simple_repeat Simple_repeat 1 23 0 2591 87 52 0 chr12 10349901 10350247 -133932242 - THE1B LTR MaLR 0 364 1 3786 47 2 2 chr12 10350279 10350746 -133931743 - L1PA8 LINE L1 -7 6165 5699 905 185 0 17 chr12 10351155 10351333 -133931156 - L1MA10 LINE L1 -514 5786 5612 2459 182 26 28 chr12 10351333 10351874 -133930615 + L1MA10 LINE L1 5786 6327 -7 24 0 0 0 chr12 10352135 10352159 -133930330 + AT_rich Low_complexity Low_complexity 1 24 0 878 201 67 128 chr12 10353569 10353665 -133928824 + MLT1A1 LTR MaLR 1 101 -264 1693 183 0 32 chr12 10353665 10353977 -133928512 + AluJo SINE Alu 1 302 -10 878 201 67 128 chr12 10353977 10354269 -133928220 + MLT1A1 LTR MaLR 101 365 0 26 0 0 0 chr12 10354442 10354468 -133928021 + AT_rich Low_complexity Low_complexity 1 26 0 511 140 9 19 chr12 10354491 10354598 -133927891 + GA-rich Low_complexity Low_complexity 4 109 0 581 232 34 57 chr12 10355077 10355254 -133927235 + MER5B DNA MER1_type 5 177 -1 351 342 6 31 chr12 10355551 10355712 -133926777 - MER5B DNA MER1_type -17 161 5 2586 137 14 28 chr12 10355721 10356143 -133926346 - MSTA LTR MaLR -12 416 1 1799 155 7 7 chr12 10357526 10357816 -133924673 + AluJb SINE Alu 1 290 -22 28 0 0 0 chr12 10358656 10358684 -133923805 + AT_rich Low_complexity Low_complexity 1 28 0 1179 214 20 3 chr12 10360051 10360346 -133922143 + L1MA4 LINE L1 5995 6294 -6 27 62 0 0 chr12 10360376 10360424 -133922065 + AT_rich Low_complexity Low_complexity 1 48 0 380 219 73 0 chr12 10360458 10360581 -133921908 - Charlie2a DNA MER1_type -2 2860 2729 594 230 48 62 chr12 10360594 10360803 -133921686 - Charlie2a DNA MER1_type -1191 1671 1466 419 277 43 18 chr12 10360838 10360984 -133921505 + MIR SINE MIR 33 173 -63 237 278 14 14 chr12 10361069 10361141 -133921348 - Charlie2b DNA MER1_type -2112 670 599 27 96 0 0 chr12 10362619 10362702 -133919787 + AT_rich Low_complexity Low_complexity 1 83 0 183 236 42 56 chr12 10362931 10363003 -133919486 + MER5A DNA MER1_type 119 189 0 1273 51 0 0 chr12 10364423 10364580 -133917909 + L1PA3 LINE L1 5996 6152 -3 367 299 28 9 chr12 10365394 10365521 -133916968 + MIR SINE MIR 23 157 -62 297 0 0 0 chr12 10366746 10366779 -133915710 + (TG)n Simple_repeat Simple_repeat 1 33 0 324 64 0 0 chr12 10366779 10366826 -133915663 + (GA)n Simple_repeat Simple_repeat 2 48 0 273 192 0 0 chr12 10367009 10367061 -133915428 + MLT1D LTR MaLR 454 505 0 803 149 242 173 chr12 10367636 10368086 -133914403 - LTR12 LTR ERV1 -233 481 1 491 313 81 26 chr12 10368361 10368633 -133913856 + L2 LINE L2 507 793 -2521 182 61 0 30 chr12 10368712 10368745 -133913744 + (TTAAA)n Simple_repeat Simple_repeat 1 32 0 567 212 23 15 chr12 10368746 10368878 -133913611 - MER3 DNA MER1_type -76 133 1 2139 310 83 66 chr12 10368889 10369896 -133912593 + L2 LINE L2 806 1857 -1457 2525 68 0 0 chr12 10369896 10370207 -133912282 - AluY SINE Alu 0 311 1 2139 310 83 66 chr12 10370207 10370900 -133911589 + L2 LINE L2 1857 2536 -778 373 297 34 0 chr12 10371312 10371430 -133911059 + MIR SINE MIR 18 139 -123 253 292 72 77 chr12 10371652 10371861 -133910628 + L2 LINE L2 3104 3311 -2 4229 166 41 43 chr12 10371982 10372033 -133910456 + LTR1B LTR ERV1 1 51 -775 1353 65 0 0 chr12 10372033 10372203 -133910286 + L1PA5 LINE L1 5973 6142 -12 4229 166 41 43 chr12 10372203 10372979 -133909510 + LTR1B LTR ERV1 51 826 0 1839 168 7 7 chr12 10373044 10373348 -133909141 - AluJb SINE Alu -7 305 2 2639 33 0 0 chr12 10374240 10374540 -133907949 + AluY SINE Alu 2 301 -10 2408 60 0 7 chr12 10374800 10375099 -133907390 + AluY SINE Alu 1 297 -14 351 0 0 0 chr12 10378302 10378341 -133904148 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 404 314 40 40 chr12 10381003 10381229 -133901260 - L2 LINE L2 0 3313 3088 306 206 0 0 chr12 10382110 10382183 -133900306 + (TG)n Simple_repeat Simple_repeat 2 74 0 23 54 0 0 chr12 10382555 10382592 -133899897 + AT_rich Low_complexity Low_complexity 1 37 0 623 341 57 43 chr12 10382665 10383102 -133899387 + L2 LINE L2 2837 3279 -34 226 291 23 12 chr12 10384297 10384383 -133898106 + MIR SINE MIR 68 154 -108 298 297 159 33 chr12 10385103 10385285 -133897204 + MIR SINE MIR 58 262 0 213 374 87 0 chr12 10385705 10385820 -133896669 + MIR SINE MIR 2 126 -136 10747 146 25 3 chr12 10385832 10387611 -133894878 - Tigger1 DNA MER2_type 0 2418 602 7593 27 3 0 chr12 10387611 10388753 -133893736 - L1PA4 LINE L1 0 6155 5012 839 132 15 8 chr12 10388746 10388882 -133893607 - THE1C LTR MaLR -238 137 1 803 78 9 0 chr12 10388883 10388999 -133893490 - THE1C-int LTR MaLR -1 1579 1463 1383 119 0 0 chr12 10388999 10389192 -133893297 + AluSq SINE Alu 121 313 0 185 59 59 0 chr12 10389217 10389251 -133893238 + A-rich Low_complexity Low_complexity 2 37 0 8269 135 50 24 chr12 10389251 10390168 -133892321 + MER4B-int LTR ERV1 4549 5440 -1318 2115 134 0 0 chr12 10390168 10390459 -133892030 - AluSx SINE Alu -21 291 1 8269 135 50 24 chr12 10390459 10391663 -133890826 + MER4B-int LTR ERV1 5440 6758 0 807 157 448 20 chr12 10391664 10392021 -133890468 + MER4B LTR ERV1 2 511 -99 23 0 0 0 chr12 10392648 10392671 -133889818 + AT_rich Low_complexity Low_complexity 1 23 0 194 150 25 0 chr12 10392854 10392894 -133889595 + (CATA)n Simple_repeat Simple_repeat 2 42 0 3105 163 25 33 chr12 10393728 10394335 -133888154 + L1PB4 LINE L1 5545 6146 -10 966 138 12 31 chr12 10396514 10396674 -133885815 - AluSg/x SINE Alu 0 310 154 201 74 0 0 chr12 10398076 10398103 -133884386 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 234 191 0 44 chr12 10399036 10399104 -133883385 + (TTTA)n Simple_repeat Simple_repeat 3 67 0 409 335 19 12 chr12 10399110 10399271 -133883218 - L2 LINE L2 -1 3312 3151 446 259 53 103 chr12 10399850 10399900 -133882589 + MIR SINE MIR 2 53 -209 2338 116 30 25 chr12 10399900 10400262 -133882227 - THE1B LTR MaLR 0 364 1 10948 104 27 1 chr12 10400262 10401803 -133880686 - THE1B-int LTR MaLR 0 1580 1 2378 132 28 8 chr12 10401803 10402160 -133880329 - THE1B LTR MaLR 0 364 1 446 259 53 103 chr12 10402160 10402370 -133880119 + MIR SINE MIR 50 251 -11 1242 312 70 36 chr12 10402396 10403304 -133879185 - L2 LINE L2 -901 2413 1475 335 302 147 70 chr12 10403398 10403475 -133879014 - L2 LINE L2 -2119 1195 1125 1291 207 50 47 chr12 10403475 10403802 -133878687 - AluJo SINE Alu 0 312 1 335 302 147 70 chr12 10403802 10404098 -133878391 - L2 LINE L2 -2189 1125 793 266 75 0 0 chr12 10406042 10406082 -133876407 - MADE1 DNA Mariner -1 79 40 323 83 150 0 chr12 10406082 10406142 -133876347 - MADE1 DNA Mariner -10 70 2 21 36 0 0 chr12 10406567 10406595 -133875894 + AT_rich Low_complexity Low_complexity 1 28 0 329 265 106 45 chr12 10406623 10406887 -133875602 + L1 LINE L1 4361 4640 -1506 516 238 79 58 chr12 10406967 10407156 -133875333 - MIR SINE MIR -46 216 24 495 111 0 12 chr12 10407565 10407581 -133874908 + L1M1 LINE L1 5664 5679 -621 3016 147 16 0 chr12 10407581 10408093 -133874396 - L1MA4 LINE L1 -4 6296 5777 495 111 0 12 chr12 10408093 10408157 -133874332 + L1M1 LINE L1 5679 5743 -557 2565 95 71 9 chr12 10408286 10408706 -133873783 + LTR7 LTR ERV1 3 448 -2 14072 114 24 27 chr12 10408708 10411591 -133870898 + HERVH LTR ERV1 1 2995 -4718 859 147 7 0 chr12 10411570 10411720 -133870769 + HERVH LTR ERV1 3140 3290 -4423 * 3028 135 0 6 chr12 10411710 10412215 -133870274 + HERVH LTR ERV1 3492 3993 -3720 1065 131 23 0 chr12 10412217 10412393 -133870096 + HERVH LTR ERV1 4488 4667 -3046 * 4014 81 10 0 chr12 10412389 10412995 -133869494 + HERVH LTR ERV1 5769 6380 -1333 * 7640 100 21 4 chr12 10412968 10414134 -133868355 + HERVH LTR ERV1 6529 7713 0 2547 98 106 5 chr12 10414134 10414541 -133867948 + LTR7 LTR ERV1 1 448 -2 368 308 82 0 chr12 10414727 10414935 -133867554 - LTR33 LTR ERVL -24 497 273 276 239 60 0 chr12 10415507 10415574 -133866915 - LOR1a LTR ERV1 -145 352 282 1531 135 239 16 chr12 10415590 10416057 -133866432 + MER4E LTR ERV1 1 764 -15 907 194 79 52 chr12 10416072 10416324 -133866165 - LOR1b LTR ERV1 -202 259 1 5346 163 37 11 chr12 10416324 10417498 -133864991 - LOR1b-int LTR ERV1 0 8120 6979 2316 97 0 3 chr12 10417498 10417808 -133864681 - AluSq SINE Alu -4 309 1 5346 163 37 11 chr12 10417808 10417827 -133864662 - LOR1b-int LTR ERV1 -1141 6979 6962 4660 95 12 1 chr12 10417827 10418480 -133864009 - PABL_A LTR ERV1 0 660 1 5346 163 37 11 chr12 10418480 10419078 -133863411 - LOR1b-int LTR ERV1 -1158 6962 6211 685 91 0 10 chr12 10419078 10419177 -133863312 + MER4A LTR ERV1 1 98 -566 * 1164 87 0 186 chr12 10419174 10419449 -133863040 + MER4A LTR ERV1 200 423 -241 2371 105 0 0 chr12 10419455 10419759 -133862730 - AluSx SINE Alu 0 312 9 787 134 165 12 chr12 10419783 10419947 -133862542 + MER4C LTR ERV1 277 465 0 2838 155 13 38 chr12 10419949 10420498 -133861991 - LOR1b-int LTR ERV1 -1908 6212 5678 1647 105 22 4 chr12 10420511 10420778 -133861711 + MER4-int LTR ERV1 1586 1857 -6263 1020 177 54 40 chr12 10420791 10421344 -133861145 + MER4-int LTR ERV1 2348 4007 -2591 4363 122 58 6 chr12 10421345 10421586 -133860903 - LOR1b-int LTR ERV1 -6573 1547 1320 2315 91 0 10 chr12 10421586 10421893 -133860596 + AluY SINE Alu 1 304 -7 4363 122 58 6 chr12 10421893 10422469 -133860020 - LOR1b-int LTR ERV1 -6800 1320 688 1756 122 20 4 chr12 10422470 10422717 -133859772 - AluJb SINE Alu -19 293 43 6426 68 15 47 chr12 10422747 10423732 -133858757 - SVA Other Other 0 1386 433 716 78 13 78 chr12 10423745 10424713 -133857776 - SVA Other Other -592 794 661 774 31 0 0 chr12 10424713 10424810 -133857679 + (GGGAGA)n Simple_repeat Simple_repeat 1 97 0 716 78 13 78 chr12 10424810 10424821 -133857668 - SVA Other Other -725 661 651 872 158 79 0 chr12 10424851 10425015 -133857474 - LOR1b-int LTR ERV1 -7420 700 524 240 174 43 0 chr12 10425047 10425093 -133857396 - 5S rRNA rRNA -72 49 2 1353 152 46 0 chr12 10425170 10425407 -133857082 - LOR1b-int LTR ERV1 -7670 450 203 * 1954 193 42 2 chr12 10425374 10425779 -133856710 - LOR1b-int LTR ERV1 -7699 421 1 1077 189 15 5 chr12 10425779 10425985 -133856504 - LOR1b LTR ERV1 0 461 254 327 210 70 14 chr12 10426011 10426154 -133856335 - MER53 DNA DNA -33 156 6 721 160 28 0 chr12 10426532 10426676 -133855813 - L1MB3 LINE L1 -312 5871 5724 3912 198 21 19 chr12 10427966 10429002 -133853487 - L1MB2 LINE L1 -7 6164 5131 336 24 0 0 chr12 10429059 10429100 -133853389 + (CA)n Simple_repeat Simple_repeat 1 41 0 2103 115 0 3 chr12 10429122 10429409 -133853080 + AluSg SINE Alu 1 286 -24 342 257 0 0 chr12 10429631 10429701 -133852788 + MER21B LTR ERV1 20 89 -774 2218 236 89 23 chr12 10429704 10430365 -133852124 + MER21B LTR ERV1 43 747 -116 3277 120 2 25 chr12 10430365 10430889 -133851600 - MER1A DNA MER1_type 0 529 18 302 158 0 0 chr12 10430888 10430945 -133851544 - MER1A DNA MER1_type -470 57 1 * 228 321 57 21 chr12 10431110 10431250 -133851239 + MLT1L LTR MaLR 145 289 -326 * 635 267 131 5 chr12 10431247 10431453 -133851036 + MLT1C LTR MaLR 220 451 -16 319 237 8 8 chr12 10431508 10431626 -133850863 + (TA)n Simple_repeat Simple_repeat 2 122 -10 1980 96 0 4 chr12 10431626 10431886 -133850603 - AluSq SINE Alu -54 259 1 319 237 8 8 chr12 10431886 10431898 -133850591 + (TA)n Simple_repeat Simple_repeat 121 132 0 2810 231 59 55 chr12 10431939 10433010 -133849479 + Tigger6a DNA MER2_type 9 1083 0 26 50 0 0 chr12 10434462 10434502 -133847987 + AT_rich Low_complexity Low_complexity 1 40 0 193 384 78 68 chr12 10434632 10434913 -133847576 - L2 LINE L2 -2 3270 2987 1526 290 104 37 chr12 10434993 10435745 -133846744 + L2 LINE L2 1259 2060 -1254 284 318 55 9 chr12 10435820 10435930 -133846559 + L2 LINE L2 3199 3313 0 749 317 132 29 chr12 10437051 10437714 -133844775 - L2 LINE L2 -21 3292 2554 1580 170 70 55 chr12 10438867 10439250 -133843239 - MLT1B LTR MaLR 0 390 2 2336 62 0 13 chr12 10440630 10440937 -133841552 + AluY SINE Alu 1 303 -8 947 270 90 48 chr12 10441453 10442083 -133840406 + L2 LINE L2 2653 3307 -6 2240 104 7 0 chr12 10442282 10442580 -133839909 + AluSp SINE Alu 1 300 -13 279 0 0 0 chr12 10442682 10442713 -133839776 + (CA)n Simple_repeat Simple_repeat 1 31 0 2490 67 0 0 chr12 10443313 10443612 -133838877 - AluY SINE Alu -12 299 1 1370 219 89 37 chr12 10443612 10443950 -133838539 + L1ME1 LINE L1 5574 5946 -220 1854 168 10 0 chr12 10443950 10444242 -133838247 + AluJb SINE Alu 1 295 -17 1370 219 89 37 chr12 10444242 10444388 -133838101 + L1ME1 LINE L1 5946 6083 -83 409 369 79 0 chr12 10445375 10445616 -133836873 - L3 LINE CR1 -15 1562 1303 464 301 119 60 chr12 10445916 10446459 -133836030 + L1M4 LINE L1 1026 1713 -4713 21 0 0 0 chr12 10446530 10446551 -133835938 + AT_rich Low_complexity Low_complexity 1 21 0 1282 195 91 75 chr12 10446574 10446958 -133835531 + MLT1B LTR MaLR 1 390 0 26 50 0 0 chr12 10447032 10447072 -133835417 + AT_rich Low_complexity Low_complexity 1 40 0 245 306 68 48 chr12 10447202 10447866 -133834623 + L1M4 LINE L1 3947 4623 -1803 914 264 32 42 chr12 10447998 10448444 -133834045 - L1ME LINE L1 -573 5591 5157 2163 125 6 3 chr12 10448444 10448755 -133833734 - AluSx SINE Alu 0 312 1 914 264 32 42 chr12 10448755 10448931 -133833558 - L1ME LINE L1 -1007 5157 4981 296 216 0 11 chr12 10449385 10449473 -133833016 + (TA)n Simple_repeat Simple_repeat 2 88 0 1609 153 38 107 chr12 10449510 10449883 -133832606 + Tigger3(Golem) DNA MER2_type 2 3029 0 240 86 0 0 chr12 10449884 10449919 -133832570 + (CA)n Simple_repeat Simple_repeat 2 36 0 496 146 0 0 chr12 10450965 10451047 -133831442 - LOR1b LTR ERV1 0 461 380 1286 166 42 12 chr12 10451047 10451306 -133831183 - LOR1a LTR ERV1 -212 285 19 211 319 113 7 chr12 10451384 10451525 -133830964 - MIR SINE MIR -73 189 34 2742 186 13 2 chr12 10451657 10452188 -133830301 - MER34 LTR ERV1 -5 537 1 297 51 0 0 chr12 10452460 10452499 -133829990 + (GGTTG)n Simple_repeat Simple_repeat 2 40 0 860 97 14 0 chr12 10452655 10452795 -133829694 + L1PA8 LINE L1 5328 5476 -678 7057 42 29 0 chr12 10452810 10453771 -133828718 - L1PA5 LINE L1 -2 6152 5226 936 106 0 0 chr12 10453771 10453909 -133828580 + L1PA8 LINE L1 6028 6168 -4 180 0 0 0 chr12 10453997 10454017 -133828472 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2420 133 13 65 chr12 10454956 10455310 -133827179 + Tigger2a DNA MER2_type 1 327 -2381 1744 165 21 4 chr12 10455310 10455618 -133826871 - AluJo SINE Alu 0 312 11 2420 133 13 65 chr12 10455618 10455721 -133826768 + Tigger2a DNA MER2_type 327 434 0 764 256 31 9 chr12 10455731 10455958 -133826531 - MIR SINE MIR -30 232 1 8735 156 15 2 chr12 10456226 10458248 -133824241 + L1PA13 LINE L1 1 2583 -4998 3851 151 19 7 chr12 10458260 10459293 -133823196 + L1PA13 LINE L1 6017 7055 -544 793 134 0 0 chr12 10459592 10459726 -133822763 + L1PA13 LINE L1 7468 7601 0 187 30 30 30 chr12 10460458 10460491 -133821998 + (TTTTTA)n Simple_repeat Simple_repeat 5 37 0 21 0 0 0 chr12 10460706 10460727 -133821762 + AT_rich Low_complexity Low_complexity 1 21 0 198 141 31 16 chr12 10460840 10460904 -133821585 + (TTTA)n Simple_repeat Simple_repeat 2 66 0 6123 104 17 3 chr12 10461064 10462705 -133819784 - L1PA8 LINE L1 -8 6164 4511 357 149 0 0 chr12 10462917 10462984 -133819505 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 1142 193 13 17 chr12 10463474 10463713 -133818776 - MLT1A1 LTR MaLR -127 238 1 1281 192 93 31 chr12 10464073 10464396 -133818093 + MER61A LTR ERV1 1 343 0 2759 199 52 13 chr12 10464397 10465077 -133817412 + MER61A-int LTR ERV1 2 707 -4510 2313 90 41 6 chr12 10465161 10465526 -133816963 + MER61A-int LTR ERV1 1411 1788 -3429 1250 173 171 72 chr12 10465528 10466026 -133816463 + LTR10B LTR ERV1 1 547 0 1002 212 89 27 chr12 10466030 10466323 -133816166 + LTR10B-int LTR ERV1 8 318 -6331 31594 219 15 27 chr12 10466346 10473739 -133808750 + LTR10B-int LTR ERV1 454 7754 -31 364 209 75 18 chr12 10473775 10473925 -133808564 + LTR10B LTR ERV1 1 251 -296 * 1180 215 41 15 chr12 10473900 10474279 -133808210 + LTR10B LTR ERV1 121 542 -5 353 143 0 0 chr12 10474305 10474368 -133808121 - LTR30 LTR ERV1 -108 614 552 2146 135 3 0 chr12 10474408 10474705 -133807784 + AluSx SINE Alu 1 298 -14 19239 96 11 10 chr12 10474708 10477610 -133804879 + MER61C-int LTR ERV1 1803 4707 -510 338 118 0 0 chr12 10477600 10477651 -133804838 + MER61C-int LTR ERV1 4657 4707 -510 * 2309 114 13 10 chr12 10477641 10478163 -133804326 + MER61C-int LTR ERV1 4657 5217 0 1892 170 121 7 chr12 10478338 10478750 -133803739 - LOR1b LTR ERV1 -2 459 1 2507 132 37 30 chr12 10479077 10479508 -133802981 + MER61C LTR ERV1 1 434 0 1358 200 40 45 chr12 10479589 10479779 -133802710 + L1MA10 LINE L1 5936 6125 -209 2467 93 0 0 chr12 10479779 10480080 -133802409 + AluSx SINE Alu 1 301 -11 1358 200 40 45 chr12 10480080 10480289 -133802200 + L1MA10 LINE L1 6125 6333 -1 819 182 0 0 chr12 10480515 10480663 -133801826 - L1PB4 LINE L1 -3 6153 6006 26 50 0 0 chr12 10480837 10480877 -133801612 + AT_rich Low_complexity Low_complexity 1 40 0 387 347 101 10 chr12 10481397 10481694 -133800795 + L2 LINE L2 2377 2700 -614 33 25 0 0 chr12 10482066 10482106 -133800383 + AT_rich Low_complexity Low_complexity 1 40 0 1775 174 10 7 chr12 10482457 10482767 -133799722 + AluJb SINE Alu 1 311 -1 541 199 15 0 chr12 10482777 10482908 -133799581 + GA-rich Low_complexity Low_complexity 2 134 0 366 287 15 15 chr12 10483199 10483335 -133799154 + A-rich Low_complexity Low_complexity 3 138 0 24 32 0 0 chr12 10483590 10483621 -133798868 + AT_rich Low_complexity Low_complexity 1 31 0 2552 63 3 0 chr12 10484053 10484356 -133798133 + AluSp SINE Alu 1 304 -9 22 56 0 0 chr12 10485060 10485096 -133797393 + AT_rich Low_complexity Low_complexity 1 36 0 180 318 30 0 chr12 10485694 10485760 -133796729 - MIR SINE MIR 0 262 195 696 265 62 54 chr12 10485784 10486057 -133796432 + L1MC5 LINE L1 7380 7660 -301 1567 230 57 70 chr12 10486057 10486719 -133795770 + MLT1E1 LTR MaLR 1 654 0 696 265 62 54 chr12 10486719 10486965 -133795524 + L1MC5 LINE L1 7660 7903 -58 25 31 0 0 chr12 10486968 10487000 -133795489 + AT_rich Low_complexity Low_complexity 1 32 0 606 333 6 0 chr12 10487000 10487171 -133795318 - MIR SINE MIR -89 173 2 228 133 0 0 chr12 10487235 10487280 -133795209 - LTR66 LTR ERVL -172 438 394 1698 211 28 6 chr12 10487301 10487662 -133794827 - MLT2D LTR ERVL -45 369 1 2352 96 0 6 chr12 10488414 10488727 -133793762 - AluY SINE Alu 0 311 1 1880 151 3 13 chr12 10488818 10489165 -133793324 - AluJb SINE Alu 0 344 1 593 281 51 101 chr12 10489458 10489932 -133792557 - HAL1 LINE L1 -919 1588 1139 186 133 0 0 chr12 10490142 10490172 -133792317 + (T)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr12 10491582 10491610 -133790879 + AT_rich Low_complexity Low_complexity 1 28 0 36 0 0 0 chr12 10491753 10491789 -133790700 + AT_rich Low_complexity Low_complexity 1 36 0 363 167 83 6 chr12 10492260 10492416 -133790073 + (TA)n Simple_repeat Simple_repeat 2 169 0 187 261 0 0 chr12 10492476 10492522 -133789967 - L2 LINE L2 -12 3301 3256 2275 97 0 10 chr12 10494139 10494437 -133788052 - AluSx SINE Alu -17 295 1 224 174 22 0 chr12 10494888 10494951 -133787538 + (TA)n Simple_repeat Simple_repeat 1 64 0 812 247 13 34 chr12 10495975 10496210 -133786279 + MLT2D LTR ERVL 1 230 -184 2088 104 13 13 chr12 10496315 10496613 -133785876 + AluSx SINE Alu 14 311 -1 3689 203 67 16 chr12 10498399 10499162 -133783327 + MER21B LTR ERV1 1 802 -61 1214 86 0 0 chr12 10499420 10499571 -133782918 - AluSg SINE Alu -159 151 1 242 267 76 0 chr12 10500491 10500596 -133781893 - MIR SINE MIR -113 149 37 25 0 0 0 chr12 10500940 10500965 -133781524 + AT_rich Low_complexity Low_complexity 1 25 0 1689 91 0 14 chr12 10501271 10501490 -133780999 + AluSg/x SINE Alu 85 300 -12 278 191 0 15 chr12 10501590 10501658 -133780831 + GA-rich Low_complexity Low_complexity 2 68 0 261 241 0 38 chr12 10503276 10503355 -133779134 + T-rich Low_complexity Low_complexity 2 77 0 189 0 0 0 chr12 10503747 10503768 -133778721 + (TTG)n Simple_repeat Simple_repeat 1 21 0 29 86 0 0 chr12 10503846 10503881 -133778608 + AT_rich Low_complexity Low_complexity 1 35 0 229 349 41 41 chr12 10504151 10504320 -133778169 + MIR3 SINE MIR 19 187 -21 2797 16 0 0 chr12 10504593 10504898 -133777591 - AluYb8 SINE Alu -13 305 1 186 43 0 0 chr12 10504960 10504983 -133777506 + (TC)n Simple_repeat Simple_repeat 2 24 0 212 277 11 43 chr12 10505241 10505335 -133777154 + GA-rich Low_complexity Low_complexity 1 91 0 489 270 78 65 chr12 10505434 10505587 -133776902 + MIR SINE MIR 2 160 -102 2149 102 25 35 chr12 10505587 10505901 -133776588 + AluSx SINE Alu 1 311 -1 489 270 78 65 chr12 10505901 10505977 -133776512 + MIR SINE MIR 160 234 -28 232 302 95 56 chr12 10506635 10506814 -133775675 - MER5A DNA MER1_type -3 186 1 1883 152 0 48 chr12 10507176 10507492 -133774997 - AluSx SINE Alu -10 302 2 401 244 67 0 chr12 10507566 10507656 -133774833 + FLAM_A SINE Alu 25 120 -22 1780 149 16 16 chr12 10507671 10507979 -133774510 - AluSx SINE Alu -2 310 3 1813 138 76 3 chr12 10509254 10509543 -133772946 - AluJb SINE Alu -2 310 1 2342 89 3 3 chr12 10509911 10510215 -133772274 - AluSp SINE Alu -9 304 1 319 189 40 0 chr12 10510595 10510669 -133771820 + L1MB5 LINE L1 6098 6174 0 609 149 19 9 chr12 10510928 10511035 -133771454 + L1PA11 LINE L1 6059 6166 -8 1318 102 0 0 chr12 10511992 10512159 -133770330 - AluSq SINE Alu -146 167 1 1091 135 49 0 chr12 10512534 10512697 -133769792 - AluJb SINE Alu -13 299 129 3336 73 106 14 chr12 10512697 10513187 -133769302 - LTR14B LTR ERVK 0 608 74 1465 139 0 5 chr12 10513187 10513395 -133769094 - AluSq SINE Alu -106 207 1 28 0 0 0 chr12 10513849 10513877 -133768612 + AT_rich Low_complexity Low_complexity 1 28 0 360 268 65 69 chr12 10513878 10514140 -133768349 + L1MDa LINE L1 2209 2494 -4116 225 291 23 12 chr12 10514145 10514231 -133768258 + L1MDa LINE L1 2822 2908 -3632 707 234 18 0 chr12 10514314 10514485 -133768004 + L1MDa LINE L1 3176 3349 -3191 1707 77 9 5 chr12 10514600 10514822 -133767667 + AluY SINE Alu 66 288 -23 367 194 0 0 chr12 10514968 10515035 -133767454 + MIR SINE MIR 173 239 -23 21 0 0 0 chr12 10515048 10515069 -133767420 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 10515142 10515163 -133767326 + (CA)n Simple_repeat Simple_repeat 2 22 0 1880 160 3 0 chr12 10515284 10515571 -133766918 - AluJo SINE Alu -24 288 1 1435 66 0 0 chr12 10516254 10516437 -133766052 + LTR14B LTR ERVK 426 608 0 1211 146 0 0 chr12 10516437 10516615 -133765874 + AluJb SINE Alu 129 306 -6 207 461 0 0 chr12 10516682 10516734 -133765755 + T-rich Low_complexity Low_complexity 1 52 0 314 248 0 0 chr12 10516755 10516856 -133765633 + G-rich Low_complexity Low_complexity 1 101 0 21 0 0 0 chr12 10517410 10517431 -133765058 + GC_rich Low_complexity Low_complexity 1 21 0 238 171 105 53 chr12 10517578 10517654 -133764835 - L1PBa LINE L1 -4487 2376 2297 27 0 0 0 chr12 10518449 10518476 -133764013 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 10518797 10518819 -133763670 + GC_rich Low_complexity Low_complexity 1 22 0 713 170 0 85 chr12 10518999 10519222 -133763267 - AluSg1 SINE Alu -104 205 2 276 248 80 58 chr12 10519245 10519337 -133763152 - MIR SINE MIR -72 190 93 2206 92 14 7 chr12 10519337 10519629 -133762860 + AluSg SINE Alu 1 294 -16 276 248 80 58 chr12 10519629 10519673 -133762816 - MIR SINE MIR -169 93 51 2109 121 26 3 chr12 10519859 10520164 -133762325 + AluSx SINE Alu 1 312 0 1001 115 0 61 chr12 10520178 10520343 -133762146 + AluJb SINE Alu 1 155 -157 306 352 8 16 chr12 10520438 10520563 -133761926 - L1MEc LINE L1 -4761 1635 1512 258 277 40 76 chr12 10520608 10521030 -133761459 - L1MEc LINE L1 -4920 1285 879 291 71 0 0 chr12 10522735 10522777 -133759712 + (TA)n Simple_repeat Simple_repeat 2 43 0 14496 172 44 37 chr12 10522779 10523026 -133759463 - L1PBa LINE L1 -2154 4708 4464 2177 114 3 0 chr12 10523026 10523325 -133759164 - AluSx SINE Alu -12 300 1 14496 172 44 37 chr12 10523325 10525008 -133757481 - L1PBa LINE L1 -2398 4464 2794 423 0 0 0 chr12 10525008 10525055 -133757434 + (TG)n Simple_repeat Simple_repeat 2 48 0 14496 172 44 37 chr12 10525055 10525409 -133757080 - L1PBa LINE L1 -4068 2794 2444 1962 122 3 13 chr12 10525409 10525721 -133756768 - AluY SINE Alu -2 309 1 14496 172 44 37 chr12 10525721 10525841 -133756648 - L1PBa LINE L1 -4418 2444 2326 911 119 8 191 chr12 10525841 10526077 -133756412 - 7SK RNA RNA 0 193 1 14496 172 44 37 chr12 10526077 10526492 -133755997 - L1PBa LINE L1 -4536 2326 1915 1812 128 6 45 chr12 10526492 10526804 -133755685 + AluSx SINE Alu 1 300 -12 14496 172 44 37 chr12 10526804 10528661 -133753828 - L1PBa LINE L1 -4947 1915 2 200 313 9 71 chr12 10528697 10528809 -133753680 - MIR SINE MIR -157 105 1 1587 146 0 72 chr12 10529963 10530284 -133752205 - AluSx SINE Alu -10 302 5 401 244 67 0 chr12 10530361 10530451 -133752038 + FLAM_A SINE Alu 25 120 -22 24 0 0 29 chr12 10530451 10530466 -133752023 + AT_rich Low_complexity Low_complexity 1 15 -19 1841 142 16 19 chr12 10530466 10530777 -133751712 - AluSx SINE Alu -2 310 1 24 0 0 29 chr12 10530777 10530796 -133751693 + AT_rich Low_complexity Low_complexity 15 34 0 211 211 39 39 chr12 10531133 10531185 -133751304 - L2 LINE L2 -79 3234 3183 2099 165 112 13 chr12 10531221 10531614 -133750875 - MSTB1 LTR MaLR 0 432 1 242 319 0 14 chr12 10532106 10532175 -133750314 + Alu SINE Alu 219 286 -15 450 276 100 40 chr12 10532200 10532450 -133750039 + AluSq SINE Alu 8 272 -41 265 320 73 33 chr12 10532621 10532771 -133749718 + MIR SINE MIR 64 219 -43 22 0 0 0 chr12 10533095 10533117 -133749372 + AT_rich Low_complexity Low_complexity 1 22 0 220 206 68 55 chr12 10533240 10533313 -133749176 + L2 LINE L2 3171 3244 -69 1894 155 3 0 chr12 10533532 10533822 -133748667 + AluSx SINE Alu 6 296 -16 22 94 0 0 chr12 10534337 10534401 -133748088 + AT_rich Low_complexity Low_complexity 1 64 0 2088 129 3 13 chr12 10534637 10534947 -133747542 + AluSx SINE Alu 6 312 0 550 336 45 12 chr12 10535427 10535671 -133746818 - MIR SINE MIR -3 259 8 315 169 28 28 chr12 10535815 10535886 -133746603 - MER58 DNA MER1_type -109 106 36 2536 285 63 23 chr12 10536297 10537386 -133745103 + L1MEc LINE L1 37 1169 -5227 240 224 0 0 chr12 10537402 10537469 -133745020 + GA-rich Low_complexity Low_complexity 2 68 0 2265 82 0 19 chr12 10537472 10537788 -133744701 + AluY SINE Alu 1 310 -1 1765 118 12 97 chr12 10537984 10538323 -133744166 - AluSq SINE Alu -3 310 1 1776 135 73 4 chr12 10538460 10538734 -133743755 - AluSx SINE Alu -19 293 1 181 213 21 21 chr12 10538767 10538814 -133743675 - MIR SINE MIR -162 100 54 336 288 135 53 chr12 10538952 10539233 -133743256 - L2 LINE L2 -16 3297 2994 270 209 65 108 chr12 10540755 10540894 -133741595 + MER94 DNA DNA 2 134 0 6438 121 136 123 chr12 10541250 10542925 -133739564 + pTR5 LTR ERV1 743 2438 0 357 296 88 16 chr12 10543836 10543961 -133738528 - MER5A DNA MER1_type -1 188 55 261 0 0 0 chr12 10544074 10544103 -133738386 + (CA)n Simple_repeat Simple_repeat 1 29 0 212 215 51 89 chr12 10545722 10545801 -133736688 - MIR SINE MIR -80 182 107 199 345 81 11 chr12 10545867 10545954 -133736535 - L2 LINE L2 -55 3217 3125 1305 174 37 50 chr12 10547634 10547933 -133734556 - AluSg SINE Alu -15 295 1 36 53 0 0 chr12 10547933 10547990 -133734499 + AT_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr12 10548946 10548976 -133733513 + AT_rich Low_complexity Low_complexity 1 30 0 1508 130 7 56 chr12 10550414 10550684 -133731805 - AluJb SINE Alu -53 259 3 252 271 43 0 chr12 10551346 10551416 -133731073 + L2 LINE L2 3186 3258 -14 24 53 0 0 chr12 10551421 10551459 -133731030 + AT_rich Low_complexity Low_complexity 1 38 0 259 295 78 36 chr12 10551946 10552139 -133730350 + L2 LINE L2 3113 3313 0 707 167 0 76 chr12 10552358 10552502 -133729987 + AluJo SINE Alu 2 134 -178 652 198 0 77 chr12 10552497 10552704 -133729785 + AluJb SINE Alu 96 286 -26 * 214 149 43 0 chr12 10552712 10552759 -133729730 + A-rich Low_complexity Low_complexity 4 52 0 241 170 0 57 chr12 10553056 10553109 -133729380 + CT-rich Low_complexity Low_complexity 1 50 0 202 228 123 0 chr12 10553813 10553870 -133728619 - MIR SINE MIR -142 120 57 438 248 43 35 chr12 10554420 10554561 -133727928 - MIR SINE MIR -50 212 71 32 0 0 0 chr12 10555468 10555500 -133726989 + AT_rich Low_complexity Low_complexity 1 32 0 185 296 41 61 chr12 10555807 10555905 -133726584 + L2 LINE L2 1876 1971 -1343 269 236 14 14 chr12 10558591 10558663 -133723826 + MIR SINE MIR 184 255 -7 245 271 28 75 chr12 10558673 10558780 -133723709 - MIR SINE MIR -66 142 41 712 250 75 67 chr12 10559945 10560305 -133722184 - MLT1A1 LTR MaLR -2 363 1 193 370 28 0 chr12 10560312 10560420 -133722069 + MIR3 SINE MIR 69 179 -29 1786 240 30 61 chr12 10560857 10561355 -133721134 + MLT1F LTR MaLR 1 482 -60 2119 110 0 29 chr12 10561355 10561663 -133720826 - AluSx SINE Alu -13 299 1 1786 240 30 61 chr12 10561663 10561723 -133720766 + MLT1F LTR MaLR 482 542 0 568 327 19 16 chr12 10561838 10562147 -133720342 + MLT1F-int LTR MaLR 286 595 -776 343 291 83 86 chr12 10562653 10562980 -133719509 + MLT1F-int LTR MaLR 1031 1356 -15 1622 252 43 46 chr12 10562997 10563537 -133718952 + MLT1F1 LTR MaLR 5 567 0 2099 132 0 0 chr12 10563574 10563870 -133718619 - AluSx SINE Alu -16 296 1 303 281 55 34 chr12 10564007 10564153 -133718336 - HAL1 LINE L1 -549 1958 1810 1655 286 68 33 chr12 10564206 10565025 -133717464 - L1ME3 LINE L1 -2 6160 5313 622 241 73 29 chr12 10565022 10565378 -133717111 - L1ME1 LINE L1 -1 6177 5805 * 2098 149 0 0 chr12 10565380 10565688 -133716801 - AluSx SINE Alu -4 308 1 2087 170 7 26 chr12 10565759 10566177 -133716312 - L1PA15 LINE L1 -1 6164 5755 930 236 41 105 chr12 10566198 10566834 -133715655 - L1ME1 LINE L1 -1669 4477 3883 8511 229 101 16 chr12 10566917 10567860 -133714629 - L1MB1 LINE L1 -1 5991 5129 1119 186 203 91 chr12 10567860 10568457 -133714032 - MER4A LTR ERV1 0 664 1 8511 229 101 16 chr12 10568457 10570304 -133712185 - L1MB1 LINE L1 -863 5129 2818 1500 168 36 65 chr12 10570304 10570690 -133711799 - THE1C LTR MaLR 0 375 1 8511 229 101 16 chr12 10570690 10571446 -133711043 - L1MB1 LINE L1 -3174 2818 2127 1587 302 74 26 chr12 10571455 10572120 -133710369 - L1MB1 LINE L1 -5194 697 1 244 188 59 0 chr12 10572132 10572217 -133710272 + (TA)n Simple_repeat Simple_repeat 1 90 0 394 359 55 18 chr12 10573744 10574184 -133708305 + L1M4 LINE L1 2274 2729 -3417 550 204 0 19 chr12 10574264 10574372 -133708117 - Tigger2 DNA MER2_type -18 2700 2595 2947 86 0 41 chr12 10574577 10575044 -133707445 - LTR7 LTR ERV1 -2 448 1 1859 84 40 69 chr12 10575045 10575449 -133707040 - HERVH LTR ERV1 0 7713 7322 1306 124 23 14 chr12 10575447 10575665 -133706824 - HERVH LTR ERV1 -1894 5819 5600 * 2777 170 0 10 chr12 10575666 10576266 -133706223 - HERVH LTR ERV1 -2564 5149 4488 3479 111 0 6 chr12 10576268 10576773 -133705716 - HERVH LTR ERV1 -3720 3993 3492 731 184 41 0 chr12 10576763 10576910 -133705579 - HERVH LTR ERV1 -4423 3290 3138 * 17955 112 29 23 chr12 10576904 10579871 -133702618 - HERVH LTR ERV1 -4728 2985 1 3445 71 4 11 chr12 10579873 10580324 -133702165 - LTR7 LTR ERV1 -2 448 1 1671 149 41 37 chr12 10581036 10581331 -133701158 - AluSx SINE Alu -16 296 1 726 281 36 39 chr12 10581836 10582142 -133700347 - L1ME3 LINE L1 0 6162 5858 19989 123 7 17 chr12 10582145 10586079 -133696410 - L1PA11 LINE L1 -7 6167 2268 1080 161 173 21 chr12 10586079 10586437 -133696052 - L1PBa LINE L1 -3815 2388 1977 962 188 0 12 chr12 10586441 10586611 -133695878 - AluSq SINE Alu -7 306 139 1314 195 3 26 chr12 10586617 10586924 -133695565 - AluSq SINE Alu -3 310 11 562 237 8 8 chr12 10586951 10587069 -133695420 - FLAM_C SINE Alu -15 118 1 5812 166 40 22 chr12 10587072 10589061 -133693428 - L1PBa LINE L1 -4225 1979 1 423 0 0 0 chr12 10589297 10589344 -133693145 + (TG)n Simple_repeat Simple_repeat 2 48 0 1490 131 9 5 chr12 10589379 10589600 -133692889 - AluSg SINE Alu -88 222 1 393 238 38 19 chr12 10589975 10590080 -133692409 - MLT1G1 LTR MaLR -2 593 487 365 321 10 38 chr12 10590220 10590496 -133691993 - MLT1H1 LTR MaLR -289 266 2 2175 87 0 14 chr12 10590501 10590811 -133691678 + AluSc SINE Alu 1 306 0 299 372 22 15 chr12 10591145 10591282 -133691207 + L2 LINE L2 2950 3087 -185 2016 131 3 3 chr12 10591357 10591639 -133690850 + AluSq SINE Alu 1 282 -31 604 93 0 0 chr12 10591564 10591639 -133690850 + AluSp/q SINE Alu 208 311 0 201 35 35 0 chr12 10591639 10591668 -133690821 + (CAAA)n Simple_repeat Simple_repeat 1 172 0 2174 163 14 16 chr12 10591904 10592267 -133690222 - MLT1A1 LTR MaLR 0 365 4 1135 240 77 36 chr12 10592545 10592936 -133689553 + MER74B LTR ERVL 123 529 -93 1596 217 91 23 chr12 10593225 10593654 -133688835 + MLT1C LTR MaLR 2 459 -8 2200 121 0 0 chr12 10593702 10593992 -133688497 + AluSx SINE Alu 1 290 -22 471 325 62 29 chr12 10594165 10594439 -133688050 + HAL1 LINE L1 365 647 -1860 2328 93 3 10 chr12 10594507 10594819 -133687670 - AluSx SINE Alu -2 310 1 863 249 129 38 chr12 10594821 10595295 -133687194 + HAL1 LINE L1 785 1301 -1206 2557 64 0 0 chr12 10595407 10595705 -133686784 - AluY SINE Alu -13 298 1 2624 141 0 3 chr12 10596169 10596545 -133685944 + THE1C LTR MaLR 1 375 0 2227 136 109 22 chr12 10596549 10596961 -133685528 - MER83 LTR ERV1 0 448 1 3797 59 6 0 chr12 10596999 10597508 -133684981 + L1PA8 LINE L1 5652 6171 0 1427 207 6 19 chr12 10597572 10597886 -133684603 + AluJb SINE Alu 1 310 -2 477 275 33 39 chr12 10597950 10598132 -133684357 + MLT1E1 LTR MaLR 5 185 -469 1973 124 0 20 chr12 10598154 10598453 -133684036 - AluSx SINE Alu -19 293 1 40 0 0 0 chr12 10598652 10598692 -133683797 + AT_rich Low_complexity Low_complexity 1 40 0 216 341 144 6 chr12 10599658 10599825 -133682664 + MIR SINE MIR 2 191 -71 359 193 0 48 chr12 10600213 10600296 -133682193 + L1MC5 LINE L1 7707 7785 -176 1631 147 61 14 chr12 10600487 10600780 -133681709 + AluSx SINE Alu 1 307 -5 1062 105 6 19 chr12 10600853 10601015 -133681474 - L1MB3 LINE L1 -18 6165 6006 2079 101 3 7 chr12 10601037 10601354 -133681135 - AluSq SINE Alu 0 316 1 857 218 61 74 chr12 10601399 10601725 -133680764 + MLT2D LTR ERVL 93 414 0 1105 253 24 6 chr12 10601727 10602049 -133680440 - L1MB3 LINE L1 -175 6008 5682 394 221 148 40 chr12 10602063 10602212 -133680277 + MLT1E LTR MaLR 10 174 -419 628 214 25 88 chr12 10602335 10602573 -133679916 + MLT1E LTR MaLR 371 593 0 683 250 26 26 chr12 10603718 10603910 -133678579 - MIR SINE MIR -34 228 37 25 0 0 0 chr12 10604255 10604280 -133678209 + AT_rich Low_complexity Low_complexity 1 25 0 1160 149 26 0 chr12 10604586 10604828 -133677661 + AluSg/x SINE Alu 85 331 0 724 183 15 8 chr12 10605087 10605218 -133677271 - AluJo SINE Alu -170 142 11 2083 102 0 20 chr12 10605284 10605588 -133676901 + AluSp SINE Alu 14 311 -2 1273 199 0 43 chr12 10606329 10606630 -133675859 - AluJb SINE Alu -23 289 2 1937 109 4 4 chr12 10606860 10607126 -133675363 - L1PB1 LINE L1 -1 6150 5885 2056 105 6 46 chr12 10607277 10607601 -133674888 - AluSp SINE Alu -2 311 1 1549 166 3 28 chr12 10607768 10608057 -133674432 - AluSq SINE Alu -31 282 1 384 206 112 9 chr12 10608520 10608627 -133673862 - MER39 LTR ERV1 0 707 590 934 171 199 28 chr12 10608627 10608878 -133673611 + MER39 LTR ERV1 413 706 -1 451 242 92 67 chr12 10608879 10609140 -133673349 - MER39 LTR ERV1 -223 484 8 931 240 62 74 chr12 10609334 10609531 -133672958 + MER67B LTR ERV1 3 201 -509 1867 112 3 29 chr12 10609531 10609844 -133672645 + AluY SINE Alu 1 305 -6 931 240 62 74 chr12 10609844 10609907 -133672582 + MER67B LTR ERV1 201 263 -447 2296 80 3 13 chr12 10609907 10610218 -133672271 + AluSp SINE Alu 1 308 -5 931 240 62 74 chr12 10610218 10610477 -133672012 + MER67B LTR ERV1 263 398 -312 461 236 64 19 chr12 10610451 10610676 -133671813 + MER67A LTR ERV1 273 543 0 * 472 298 68 40 chr12 10610907 10611155 -133671334 + MIR SINE MIR 2 256 -6 2177 125 0 6 chr12 10611979 10612290 -133670199 + AluSx SINE Alu 1 309 -3 330 264 90 58 chr12 10613193 10613348 -133669141 - MIR SINE MIR -23 239 80 360 0 0 0 chr12 10613659 10613699 -133668790 + (TG)n Simple_repeat Simple_repeat 2 41 0 1036 145 16 116 chr12 10613733 10613975 -133668514 - AluJo SINE Alu -94 218 1 517 302 11 67 chr12 10614183 10614451 -133668038 - MIR SINE MIR -2 260 8 186 250 0 0 chr12 10614784 10614836 -133667653 - L2 LINE L2 0 3313 3262 189 147 0 0 chr12 10614975 10615009 -133667480 + (TTTTC)n Simple_repeat Simple_repeat 4 37 0 1453 168 80 18 chr12 10616736 10617010 -133665479 - AluJb SINE Alu -11 301 11 224 333 13 0 chr12 10617816 10617894 -133664595 + MIR3 SINE MIR 109 187 -21 1545 177 78 14 chr12 10618699 10618982 -133663507 - AluJb SINE Alu -11 301 1 609 196 0 74 chr12 10619818 10619955 -133662534 + AluJb SINE Alu 161 286 -26 243 61 0 0 chr12 10619955 10619988 -133662501 + (CA)n Simple_repeat Simple_repeat 2 34 0 609 196 0 74 chr12 10619988 10620013 -133662476 + AluJb SINE Alu 286 311 -1 5830 73 1 11 chr12 10620417 10621256 -133661233 + L1P3 LINE L1 1 960 -5186 184 288 17 34 chr12 10621839 10621898 -133660591 + L2 LINE L2 3237 3294 -19 201 267 199 30 chr12 10621958 10622089 -133660400 - MIR SINE MIR -64 198 46 617 270 143 9 chr12 10623128 10623358 -133659131 + MIR SINE MIR 2 262 0 291 104 0 0 chr12 10623687 10623735 -133658754 + (CA)n Simple_repeat Simple_repeat 1 48 0 242 284 61 47 chr12 10623790 10623938 -133658551 + L2 LINE L2 3160 3309 -4 860 190 38 9 chr12 10624209 10624420 -133658069 - HAL1 LINE L1 -313 2194 1978 180 115 0 0 chr12 10624487 10624513 -133657976 - L2 LINE L2 -97 3216 3191 429 265 119 27 chr12 10624609 10624794 -133657695 - HAL1 LINE L1 -594 1913 1712 433 280 0 0 chr12 10624831 10624931 -133657558 + 7SLRNA srpRNA srpRNA 211 310 -10 548 239 53 5 chr12 10627875 10628084 -133654405 + L1M4 LINE L1 2984 3202 -2944 4777 168 7 16 chr12 10628098 10628991 -133653498 - L1PA16 LINE L1 -9 6157 5273 1864 152 3 3 chr12 10629019 10629308 -133653181 - AluSq SINE Alu -24 289 1 1868 139 77 52 chr12 10629319 10629685 -133652804 - THE1C LTR MaLR 0 375 1 9227 129 40 32 chr12 10629685 10631253 -133651236 - THE1C-int LTR MaLR 0 1580 1 1871 147 106 29 chr12 10631253 10631601 -133650888 - THE1C LTR MaLR 0 375 1 1732 180 3 0 chr12 10632144 10632433 -133650056 + AluSx SINE Alu 1 290 -22 255 356 18 61 chr12 10632665 10632905 -133649584 + L2 LINE L2 2795 3028 -285 3075 194 159 18 chr12 10632905 10633753 -133648736 + LTR28 LTR ERV1 1 1018 -2 237 303 0 113 chr12 10633898 10633951 -133648538 + L2 LINE L2 3141 3198 -74 2269 122 3 3 chr12 10633951 10634263 -133648226 - AluSp SINE Alu -1 312 1 237 303 0 113 chr12 10634263 10634351 -133648138 + L2 LINE L2 3198 3266 -6 1029 108 17 6 chr12 10635280 10635456 -133647033 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2191 116 0 0 chr12 10635456 10635809 -133646680 - AluSx SINE Alu 0 364 12 1612 162 10 13 chr12 10635937 10636240 -133646249 - AluJb SINE Alu -10 302 1 270 233 23 23 chr12 10636403 10636489 -133646000 - L1MC5 LINE L1 -35 7926 7841 241 188 0 0 chr12 10636529 10636577 -133645912 - L1MC5 LINE L1 -86 7875 7828 1272 219 40 68 chr12 10636717 10637220 -133645269 - L1MC5 LINE L1 -469 7492 7004 422 196 28 47 chr12 10637260 10637367 -133645122 - L1MC4 LINE L1 -11 8031 7927 1163 143 0 88 chr12 10637373 10637611 -133644878 - MER67D LTR ERV1 -294 220 4 245 182 0 30 chr12 10637615 10637681 -133644808 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 1630 178 11 33 chr12 10638371 10638731 -133643758 - L1MA7 LINE L1 -598 5702 5351 * 1670 180 50 19 chr12 10638729 10639091 -133643398 + L1MA7 LINE L1 5703 6075 -216 493 173 16 24 chr12 10639093 10639220 -133643269 + L1MA7 LINE L1 6166 6291 0 2350 89 20 0 chr12 10639225 10639527 -133642962 + AluSx SINE Alu 1 308 -4 27 29 0 0 chr12 10639769 10639803 -133642686 + AT_rich Low_complexity Low_complexity 1 34 0 2346 94 0 3 chr12 10640399 10640707 -133641782 + AluSq SINE Alu 6 312 -1 391 333 14 0 chr12 10640804 10640945 -133641544 - MIR SINE MIR -2 260 118 2181 123 0 0 chr12 10640971 10641264 -133641225 + AluSx SINE Alu 2 294 -18 820 224 12 6 chr12 10641713 10641883 -133640606 - FRAM SINE Alu -11 165 1 180 0 0 0 chr12 10641899 10641919 -133640570 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1662 115 0 4 chr12 10642849 10643075 -133639414 - AluSx SINE Alu -24 288 64 21 0 0 0 chr12 10643085 10643106 -133639383 + AT_rich Low_complexity Low_complexity 1 21 0 2032 152 30 14 chr12 10643512 10643881 -133638608 + THE1C LTR MaLR 1 375 0 307 260 96 34 chr12 10643885 10644062 -133638427 + HsTC2 DNA Tc2 29 216 -1682 240 178 40 88 chr12 10644164 10644286 -133638203 + HsTC2 DNA Tc2 1250 1540 -358 22 35 0 0 chr12 10644392 10644421 -133638068 + AT_rich Low_complexity Low_complexity 1 29 0 485 70 0 14 chr12 10644456 10644527 -133637962 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1419 186 7 17 chr12 10644535 10644830 -133637659 - AluSx SINE Alu -10 292 1 372 335 32 2 chr12 10645339 10645507 -133636982 - MIR SINE MIR -59 149 23 1272 117 0 5 chr12 10646400 10646588 -133635901 - AluSg/x SINE Alu -3 307 121 1843 157 0 6 chr12 10647069 10647381 -133635108 - AluSx SINE Alu -2 310 1 3549 121 15 6 chr12 10647428 10647950 -133634539 - MER1A DNA MER1_type 0 527 1 610 244 0 62 chr12 10648111 10648271 -133634218 + AluJo SINE Alu 1 150 -162 748 247 0 17 chr12 10648296 10648490 -133633999 + AluJb SINE Alu 116 306 0 232 319 42 14 chr12 10649233 10649377 -133633112 - L1MEc LINE L1 -5155 1241 1094 3409 137 4 5 chr12 10649377 10649932 -133632557 - L1PA14 LINE L1 0 6161 5608 2413 105 3 62 chr12 10649935 10650125 -133632364 + L1P4 LINE L1 5020 5220 -941 2379 62 0 13 chr12 10650125 10650432 -133632057 + AluY SINE Alu 1 303 -8 2413 105 3 62 chr12 10650432 10650586 -133631903 + L1P4 LINE L1 5220 5382 -779 2236 101 3 19 chr12 10650586 10650903 -133631586 + AluSx SINE Alu 1 312 0 2413 105 3 62 chr12 10650903 10651184 -133631305 + L1P4 LINE L1 5382 5603 -558 2759 257 58 41 chr12 10651240 10654030 -133628459 - L1M4 LINE L1 -2904 3478 542 2120 137 7 0 chr12 10655689 10655996 -133626493 + AluSx SINE Alu 1 309 -3 296 287 82 10 chr12 10656271 10656466 -133626023 - L1MEc LINE L1 -4876 1520 1312 736 103 0 44 chr12 10656527 10656663 -133625826 + AluSg SINE Alu 1 130 -180 1467 122 0 53 chr12 10656671 10656974 -133625515 + AluY SINE Alu 1 287 -24 310 325 33 7 chr12 10657163 10657314 -133625175 + MER117 DNA MER1_type 43 197 0 363 400 15 30 chr12 10657682 10657947 -133624542 + MIR SINE MIR 2 262 0 2347 162 67 18 chr12 10660600 10660739 -133621750 - L1MA9 LINE L1 -1 6311 6180 207 0 0 0 chr12 10660739 10660762 -133621727 + (TG)n Simple_repeat Simple_repeat 2 24 0 2347 162 67 18 chr12 10660762 10661133 -133621356 - L1MA9 LINE L1 -132 6180 5776 24 32 0 0 chr12 10661204 10661235 -133621254 + AT_rich Low_complexity Low_complexity 1 31 0 2108 112 0 7 chr12 10661537 10661831 -133620658 + AluSx SINE Alu 5 296 -16 29 47 0 0 chr12 10662641 10662684 -133619805 + AT_rich Low_complexity Low_complexity 1 43 0 180 219 0 0 chr12 10662736 10662777 -133619712 + (TA)n Simple_repeat Simple_repeat 2 42 0 1071 38 0 32 chr12 10662996 10663154 -133619335 - L1PA4 LINE L1 -2 6153 6001 269 347 42 26 chr12 10663475 10663665 -133618824 - L2 LINE L2 -1 3312 3120 368 279 18 0 chr12 10663819 10663930 -133618559 - MER94 DNA DNA -21 113 1 293 387 85 15 chr12 10663941 10664272 -133618217 - L2 LINE L2 -407 2907 2554 279 293 96 63 chr12 10664547 10664912 -133617577 - L1M4 LINE L1 -1800 4346 3970 2258 116 0 3 chr12 10665209 10665520 -133616969 - AluSx SINE Alu -2 310 1 22 70 0 0 chr12 10665893 10665936 -133616553 + AT_rich Low_complexity Low_complexity 1 43 0 29 28 0 0 chr12 10666370 10666406 -133616083 + AT_rich Low_complexity Low_complexity 1 36 0 2327 95 0 0 chr12 10666856 10667150 -133615339 - AluSx SINE Alu -15 297 4 302 310 54 16 chr12 10667945 10668074 -133614415 + MIR SINE MIR 119 252 -10 21 57 0 0 chr12 10668892 10668927 -133613562 + AT_rich Low_complexity Low_complexity 1 35 0 2014 139 10 0 chr12 10670091 10670379 -133612110 + AluSx SINE Alu 1 291 -21 354 337 63 5 chr12 10670400 10670590 -133611899 + L1M4 LINE L1 2227 2427 -3719 338 266 44 9 chr12 10670668 10670781 -133611708 - L1MEd LINE L1 -5026 1093 977 2077 111 3 13 chr12 10670986 10671284 -133611205 - AluSx SINE Alu -17 295 1 409 275 135 62 chr12 10671900 10672336 -133610153 - L1ME3A LINE L1 -15 6155 5688 1132 92 0 0 chr12 10672621 10672773 -133609716 - AluSp/q SINE Alu -6 307 156 216 0 0 0 chr12 10673215 10673239 -133609250 + (T)n Simple_repeat Simple_repeat 1 24 0 28 0 0 0 chr12 10673811 10673839 -133608650 + AT_rich Low_complexity Low_complexity 1 28 0 305 137 14 14 chr12 10673865 10673938 -133608551 - L1MC2 LINE L1 -1 6343 6271 276 182 182 0 chr12 10673938 10673993 -133608496 - HERVL40 LTR ERVL -2106 3424 3360 2386 229 32 7 chr12 10674061 10674630 -133607859 + HERVL40 LTR ERVL 3438 4020 -1510 216 0 0 0 chr12 10674888 10674912 -133607577 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2041 130 13 26 chr12 10675089 10675467 -133607022 - L1PA15 LINE L1 -1 6164 5792 26 0 0 0 chr12 10676459 10676485 -133606004 + AT_rich Low_complexity Low_complexity 1 26 0 1171 229 147 37 chr12 10677074 10677529 -133604960 + MLT1D LTR MaLR 1 505 0 2271 101 3 3 chr12 10678374 10678670 -133603819 - AluSp SINE Alu -16 297 2 273 340 86 41 chr12 10678790 10679081 -133603408 - L2 LINE L2 -206 3107 2804 350 296 78 49 chr12 10679105 10679389 -133603100 - LTR33A LTR ERVL 0 523 232 1230 153 91 16 chr12 10679401 10679655 -133602834 + L1MB1 LINE L1 5895 6167 -1 22 0 0 0 chr12 10679655 10679677 -133602812 + AT_rich Low_complexity Low_complexity 1 22 0 297 273 47 39 chr12 10679705 10679833 -133602656 - LTR33A LTR ERVL -305 218 90 1597 105 3 75 chr12 10680053 10680384 -133602105 + AluSq SINE Alu 5 313 0 252 329 60 12 chr12 10680690 10680857 -133601632 + MER46C DNA MER2_type 159 333 -5 2061 102 14 7 chr12 10680863 10681158 -133601331 + AluSp SINE Alu 1 297 -16 252 351 81 22 chr12 10682528 10682713 -133599776 - MIR SINE MIR -18 244 49 568 139 44 58 chr12 10682852 10682989 -133599500 - FLAM_C SINE Alu 0 143 9 1926 138 10 0 chr12 10683049 10683340 -133599149 + AluSx SINE Alu 4 297 -15 2443 61 3 3 chr12 10683988 10684285 -133598204 + AluY SINE Alu 3 299 -12 1265 119 0 0 chr12 10684286 10684462 -133598027 + AluSg/x SINE Alu 126 301 -11 216 226 38 0 chr12 10684483 10684536 -133597953 + (TATG)n Simple_repeat Simple_repeat 3 57 0 360 289 100 28 chr12 10684718 10684898 -133597591 + MIR SINE MIR 60 252 -10 1837 97 7 25 chr12 10686018 10686296 -133596193 - AluSp SINE Alu -32 281 9 219 203 136 0 chr12 10686812 10686871 -133595618 + MIR SINE MIR 186 252 -10 270 253 111 0 chr12 10686883 10686982 -133595507 + L1MC5 LINE L1 6993 7102 -859 668 165 11 114 chr12 10687015 10687191 -133595298 + L1MD2 LINE L1 6083 6240 -119 12984 148 31 19 chr12 10687199 10687853 -133594636 - Tigger1 DNA MER2_type -1 2417 1772 3423 83 0 11 chr12 10687853 10688323 -133594166 - L1PA8 LINE L1 0 6172 5708 12984 148 31 19 chr12 10688323 10690041 -133592448 - Tigger1 DNA MER2_type -646 1772 17 2103 120 7 7 chr12 10690642 10690943 -133591546 - AluSx SINE Alu -11 301 1 515 242 9 96 chr12 10691087 10691306 -133591183 + L1ME3A LINE L1 5882 6081 -89 21 0 0 0 chr12 10692246 10692267 -133590222 + AT_rich Low_complexity Low_complexity 1 21 0 2444 70 0 0 chr12 10692479 10692780 -133589709 + AluY SINE Alu 1 301 -10 37 23 0 0 chr12 10693659 10693703 -133588786 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr12 10693758 10693804 -133588685 + AT_rich Low_complexity Low_complexity 1 46 0 3369 128 8 16 chr12 10694743 10695258 -133587231 + MER9 LTR ERVK 1 511 0 236 91 23 0 chr12 10695452 10695496 -133586993 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 9452 145 50 22 chr12 10695654 10697366 -133585123 - Tigger1 DNA MER2_type -1 2417 657 1978 253 64 16 chr12 10697385 10697946 -133584543 + LTR26 LTR ERV1 16 603 0 * 3093 186 46 19 chr12 10697946 10698589 -133583900 - Tigger1 DNA MER2_type -1757 661 1 1809 210 69 99 chr12 10698735 10699435 -133583054 - LTR8A LTR ERV1 -15 712 34 267 217 36 72 chr12 10699595 10699678 -133582811 - LTR48 LTR ERV1 -128 659 580 937 186 116 28 chr12 10699807 10700022 -133582467 - MER34C LTR ERV1 -351 234 1 1503 135 73 15 chr12 10700742 10701002 -133581487 - AluSp SINE Alu -38 275 1 457 338 73 16 chr12 10701642 10701956 -133580533 - LTR16C LTR ERVL -4 487 156 2346 48 19 32 chr12 10702179 10702494 -133579995 + AluY SINE Alu 1 311 0 243 61 0 0 chr12 10702552 10702585 -133579904 + (TG)n Simple_repeat Simple_repeat 2 34 0 460 298 58 0 chr12 10703731 10703902 -133578587 + MIR SINE MIR 82 262 0 280 319 53 43 chr12 10705185 10705373 -133577116 + MIR SINE MIR 29 218 -44 1612 101 13 82 chr12 10706432 10706749 -133575740 - AluSq SINE Alu -18 295 1 1795 148 52 7 chr12 10706841 10707132 -133575357 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr12 10707551 10707579 -133574910 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr12 10708269 10708306 -133574183 + AT_rich Low_complexity Low_complexity 1 37 0 2126 123 10 0 chr12 10708370 10708679 -133573810 - AluSq SINE Alu -1 312 1 189 74 0 0 chr12 10708698 10708725 -133573764 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 1735 152 0 7 chr12 10708725 10709007 -133573482 - AluY SINE Alu -29 282 1 375 226 102 102 chr12 10709012 10709103 -133573386 + HAL1 LINE L1 1580 1670 -837 2224 107 0 10 chr12 10709103 10709403 -133573086 - AluSx SINE Alu -15 297 1 375 226 102 102 chr12 10709403 10709497 -133572992 + HAL1 LINE L1 1669 1765 -742 490 286 71 16 chr12 10709617 10709799 -133572690 - MIR SINE MIR -59 203 12 471 223 85 121 chr12 10709823 10710187 -133572302 + HAL1 LINE L1 2155 2505 -2 2102 94 10 10 chr12 10710210 10710508 -133571981 + AluSp SINE Alu 3 300 -13 1896 141 7 10 chr12 10710685 10710984 -133571505 - AluSx SINE Alu -14 298 1 2284 113 3 3 chr12 10711011 10711322 -133571167 - AluSq SINE Alu -2 311 1 2070 107 0 19 chr12 10711948 10712265 -133570224 + AluY SINE Alu 1 311 0 2026 155 3 0 chr12 10712270 10712580 -133569909 + AluSq SINE Alu 3 313 0 1651 87 148 23 chr12 10713219 10713483 -133569006 + AluSc SINE Alu 1 297 -2 2112 117 0 13 chr12 10714531 10714840 -133567649 - AluSx SINE Alu -7 305 1 228 24 73 0 chr12 10714856 10714897 -133567592 + A-rich Low_complexity Low_complexity 2 45 0 363 320 61 7 chr12 10715375 10715522 -133566967 - MIR SINE MIR -76 186 32 309 231 115 0 chr12 10716078 10716156 -133566333 - MIR SINE MIR -95 167 81 2403 70 10 10 chr12 10716560 10716861 -133565628 - AluY SINE Alu -10 301 1 1995 148 7 3 chr12 10717399 10717704 -133564785 - AluSx SINE Alu -6 306 1 2260 99 3 6 chr12 10718315 10718627 -133563862 + AluSp SINE Alu 2 312 -1 223 193 0 53 chr12 10718710 10718767 -133563722 + MIR SINE MIR 75 128 -134 1992 113 3 7 chr12 10718773 10719066 -133563423 - AluSx SINE Alu -20 292 1 205 51 51 0 chr12 10719248 10719287 -133563202 + A-rich Low_complexity Low_complexity 2 42 0 22 0 0 0 chr12 10719347 10719369 -133563120 + AT_rich Low_complexity Low_complexity 1 22 0 385 243 10 19 chr12 10719609 10719712 -133562777 + MIR SINE MIR 56 157 -105 274 336 76 0 chr12 10719928 10720059 -133562430 - MIR3 SINE MIR -20 188 48 423 295 0 34 chr12 10720352 10720501 -133561988 + MIR SINE MIR 1 144 -118 23 0 0 0 chr12 10721895 10721918 -133560571 + GC_rich Low_complexity Low_complexity 1 23 0 2152 73 31 0 chr12 10722930 10723217 -133559272 + AluSp SINE Alu 1 296 -17 1928 142 7 0 chr12 10723661 10723963 -133558526 + AluJb SINE Alu 1 304 -8 1552 76 4 44 chr12 10723965 10724190 -133558299 + AluSc SINE Alu 1 216 -93 531 85 4 11 chr12 10724233 10724469 -133558020 + AluY SINE Alu 1 297 -14 1957 115 3 22 chr12 10724561 10724873 -133557616 - AluSq SINE Alu -7 306 1 1824 133 3 7 chr12 10725003 10725315 -133557174 - AluSx SINE Alu 0 311 1 2372 68 0 7 chr12 10726365 10726658 -133555831 - AluSg SINE Alu -17 293 3 1217 248 90 52 chr12 10726709 10726755 -133555734 - MLT2B1 LTR ERVL 0 520 477 2188 171 6 0 chr12 10726755 10727099 -133555390 - MER7A DNA MER2_type -1 345 2 1217 248 90 52 chr12 10727099 10727553 -133554936 - MLT2B1 LTR ERVL -43 477 1 216 258 65 32 chr12 10727618 10727680 -133554809 - MER5B DNA MER1_type -10 168 105 229 299 13 13 chr12 10727805 10727882 -133554607 - MER5B DNA MER1_type -101 77 1 2256 123 0 0 chr12 10728062 10728371 -133554118 + AluSg SINE Alu 1 309 -1 1300 152 10 10 chr12 10728371 10728575 -133553914 + AluSg/x SINE Alu 85 288 -24 820 187 20 7 chr12 10728840 10728990 -133553499 - MER6 DNA MER2_type 0 865 714 2240 131 0 0 chr12 10728994 10729306 -133553183 - AluSx SINE Alu 0 312 1 234 91 0 0 chr12 10729658 10729691 -133552798 + (ATG)n Simple_repeat Simple_repeat 2 34 0 949 177 67 35 chr12 10729872 10729907 -133552582 - MER33 DNA MER1_type -2261 324 292 189 0 0 0 chr12 10729907 10729928 -133552561 + (TA)n Simple_repeat Simple_repeat 2 22 0 949 177 67 35 chr12 10729928 10730146 -133552343 - MER33 DNA MER1_type -2293 292 63 833 129 0 0 chr12 10730146 10730262 -133552227 + FLAM_C SINE Alu 1 116 -27 288 234 109 0 chr12 10730285 10730349 -133552140 - MER33 DNA MER1_type -252 72 2 411 133 444 0 chr12 10730718 10730808 -133551681 + AluYb8 SINE Alu 2 131 -187 225 0 0 0 chr12 10732553 10732578 -133549911 + (CA)n Simple_repeat Simple_repeat 2 26 0 3554 248 84 48 chr12 10733130 10733865 -133548624 - L1ME1 LINE L1 -5 6161 5455 1632 158 3 11 chr12 10733865 10734150 -133548339 - AluSq SINE Alu -26 287 5 3554 248 84 48 chr12 10734150 10734338 -133548151 - L1ME1 LINE L1 -711 5455 5275 1841 120 23 20 chr12 10734338 10734637 -133547852 - AluSq SINE Alu -13 300 1 3554 248 84 48 chr12 10734637 10736087 -133546402 - L1ME1 LINE L1 -891 5275 3880 1239 197 6 61 chr12 10736087 10736417 -133546072 - AluJo SINE Alu 0 312 1 2133 106 3 7 chr12 10736422 10736723 -133545766 - AluSq SINE Alu -13 300 1 3554 248 84 48 chr12 10736723 10736934 -133545555 - L1ME1 LINE L1 -2289 3877 3675 2281 77 7 3 chr12 10736934 10737234 -133545255 - AluSg SINE Alu -9 301 1 3554 248 84 48 chr12 10737234 10737502 -133544987 - L1ME1 LINE L1 -2491 3675 3193 327 303 92 89 chr12 10737551 10738070 -133544419 + L1PA13 LINE L1 924 1444 -6130 882 274 91 30 chr12 10738494 10738866 -133543623 + L1PA13 LINE L1 2244 2638 -4943 1460 109 9 5 chr12 10738988 10739199 -133543290 + AluSg/x SINE Alu 90 301 -8 28 29 0 0 chr12 10739992 10740027 -133542462 + AT_rich Low_complexity Low_complexity 1 35 0 1353 133 178 42 chr12 10740133 10740256 -133542233 - AluSx SINE Alu -2 300 195 2217 104 7 0 chr12 10740256 10740545 -133541944 - AluSp SINE Alu -18 295 5 1353 133 178 42 chr12 10740545 10740685 -133541804 - AluSx SINE Alu -107 195 1 1034 119 0 0 chr12 10741297 10741448 -133541041 + AluSg SINE Alu 1 151 -159 2450 218 62 53 chr12 10741718 10742504 -133539985 - MER21B LTR ERV1 -70 793 1 2251 90 19 16 chr12 10744343 10744654 -133537835 - AluSx SINE Alu 0 312 1 307 226 88 66 chr12 10744676 10744768 -133537721 - MIR SINE MIR -72 190 93 2112 104 21 0 chr12 10744768 10745056 -133537433 + AluSg SINE Alu 1 294 -16 307 226 88 66 chr12 10745056 10745100 -133537389 - MIR SINE MIR -169 93 51 2136 112 0 3 chr12 10745287 10745596 -133536893 + AluSq SINE Alu 1 308 0 251 225 0 50 chr12 10745987 10746067 -133536422 + A-rich Low_complexity Low_complexity 2 77 0 255 61 0 0 chr12 10747747 10747780 -133534709 + (TC)n Simple_repeat Simple_repeat 2 34 0 2329 58 0 32 chr12 10747882 10748192 -133534297 - AluY SINE Alu -11 300 1 2170 102 3 0 chr12 10748641 10748974 -133533515 + AluSp SINE Alu 1 334 0 4532 118 40 32 chr12 10749333 10749835 -133532654 - MER4E LTR ERV1 -1 778 265 1943 118 7 21 chr12 10749835 10750146 -133532343 - AluSq SINE Alu 0 307 1 4532 118 40 32 chr12 10750146 10750414 -133532075 - MER4E LTR ERV1 -514 265 1 1897 125 24 3 chr12 10750434 10750559 -133531930 + AluSx SINE Alu 1 122 -190 186 103 0 0 chr12 10750559 10750588 -133531901 + (CA)n Simple_repeat Simple_repeat 2 30 0 1897 125 24 3 chr12 10750588 10750749 -133531740 + AluSx SINE Alu 122 293 -19 1926 133 3 7 chr12 10751067 10751361 -133531128 - AluSx SINE Alu -14 298 6 2218 90 0 0 chr12 10751409 10751710 -133530779 - L1PA4 LINE L1 -3 6152 5852 229 372 47 21 chr12 10752041 10752232 -133530257 + L2 LINE L2 2181 2376 -938 444 295 57 89 chr12 10752404 10752814 -133529675 + L2 LINE L2 2367 2757 -557 2136 122 10 3 chr12 10752814 10753117 -133529372 + AluSq SINE Alu 1 305 -8 444 295 57 89 chr12 10753117 10753248 -133529241 + L2 LINE L2 2757 2891 -423 1975 148 7 3 chr12 10753256 10753554 -133528935 - AluSx SINE Alu -13 299 1 1945 138 3 6 chr12 10753856 10754167 -133528322 - AluSx SINE Alu 0 312 3 225 83 0 0 chr12 10754248 10754284 -133528205 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1885 121 0 17 chr12 10754289 10754586 -133527903 - AluSq SINE Alu -21 292 1 272 250 69 76 chr12 10755576 10755695 -133526794 - MIR SINE MIR -31 231 112 1371 169 7 23 chr12 10755695 10755997 -133526492 + AluSq SINE Alu 1 297 -16 272 250 69 76 chr12 10755997 10756021 -133526468 - MIR SINE MIR -150 112 89 2137 112 3 10 chr12 10757584 10757887 -133524602 - AluSx SINE Alu -11 301 1 1822 132 10 34 chr12 10757898 10758072 -133524417 - AluSg SINE Alu -19 291 125 186 43 0 0 chr12 10758072 10758095 -133524394 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1822 132 10 34 chr12 10758095 10758216 -133524273 - AluSg SINE Alu -185 125 3 2051 134 0 13 chr12 10758304 10758611 -133523878 + AluSx SINE Alu 1 303 -9 1294 149 106 18 chr12 10758690 10758972 -133523517 + AluSx SINE Alu 1 307 -5 438 20 0 0 chr12 10758978 10759029 -133523460 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 231 188 0 0 chr12 10759022 10759070 -133523419 + GA-rich Low_complexity Low_complexity 1 48 0 * 891 150 7 0 chr12 10759076 10759216 -133523273 + AluSq/x SINE Alu 3 143 -170 2245 93 0 10 chr12 10759225 10759538 -133522951 + AluY SINE Alu 1 310 -1 39 0 0 0 chr12 10760320 10760359 -133522130 + AT_rich Low_complexity Low_complexity 1 39 0 1484 158 55 28 chr12 10760532 10760786 -133521703 + AluJo SINE Alu 1 261 -51 21 95 0 0 chr12 10760908 10760971 -133521518 + AT_rich Low_complexity Low_complexity 1 63 0 25 31 0 0 chr12 10761756 10761788 -133520701 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr12 10762134 10762163 -133520326 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr12 10763199 10763234 -133519255 + AT_rich Low_complexity Low_complexity 1 35 0 2224 117 3 0 chr12 10764379 10764669 -133517820 + AluSx SINE Alu 1 291 -21 374 351 58 0 chr12 10764691 10764899 -133517590 + L1M4 LINE L1 2227 2446 -3700 320 257 44 9 chr12 10764958 10765071 -133517418 - L1MEd LINE L1 -5026 1093 977 2273 112 3 0 chr12 10765267 10765570 -133516919 - AluSx SINE Alu -8 304 1 308 275 135 62 chr12 10766181 10766617 -133515872 - L1ME3A LINE L1 -15 6155 5688 1248 92 0 0 chr12 10766902 10767065 -133515424 - AluSp SINE Alu -6 307 145 21 0 0 0 chr12 10767223 10767244 -133515245 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr12 10767495 10767518 -133514971 + (T)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr12 10768093 10768118 -133514371 + AT_rich Low_complexity Low_complexity 1 25 0 294 137 14 14 chr12 10768144 10768217 -133514272 - L1MC2 LINE L1 -1 6343 6271 258 151 226 0 chr12 10768219 10768272 -133514217 - HERVL68 LTR ERVL -1466 1571 1507 2304 227 30 5 chr12 10768340 10768909 -133513580 + HERVL40 LTR ERVL 3438 4020 -1510 216 0 0 0 chr12 10769167 10769191 -133513298 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2339 132 11 3 chr12 10769368 10769738 -133512751 - L1PA15 LINE L1 -1 6164 5792 26 0 0 0 chr12 10770729 10770755 -133511734 + AT_rich Low_complexity Low_complexity 1 26 0 425 345 40 6 chr12 10770986 10771160 -133511329 - LTR33 LTR ERVL -309 212 33 1181 222 149 40 chr12 10771344 10771799 -133510690 + MLT1D LTR MaLR 1 505 0 27 0 0 0 chr12 10772500 10772527 -133509962 + AT_rich Low_complexity Low_complexity 1 27 0 2318 98 3 3 chr12 10772639 10772936 -133509553 - AluSp SINE Alu -15 298 2 280 344 82 38 chr12 10773056 10773347 -133509142 - L2 LINE L2 -206 3107 2804 337 296 123 21 chr12 10773371 10773614 -133508875 - LTR33A LTR ERVL 0 523 256 1349 148 92 0 chr12 10773666 10773916 -133508573 + L1MB1 LINE L1 5895 6167 -1 22 0 0 0 chr12 10773916 10773938 -133508551 + AT_rich Low_complexity Low_complexity 1 22 0 331 274 43 8 chr12 10773979 10774096 -133508393 - LTR33A LTR ERVL -328 195 75 2115 101 3 37 chr12 10774274 10774603 -133507886 + AluSq SINE Alu 1 319 0 319 305 60 12 chr12 10774910 10775077 -133507412 + MER46C DNA MER2_type 159 333 -5 2386 72 14 0 chr12 10775083 10775376 -133507113 + AluSp SINE Alu 1 297 -16 242 351 81 22 chr12 10776728 10776913 -133505576 - MIR SINE MIR -18 244 49 837 161 0 29 chr12 10777052 10777189 -133505300 - FLAM_C SINE Alu 0 133 1 2170 103 10 0 chr12 10777239 10777531 -133504958 + AluSx SINE Alu 3 297 -15 2591 56 3 0 chr12 10778168 10778474 -133504015 + AluY SINE Alu 1 307 -4 1298 101 0 0 chr12 10778474 10778642 -133503847 + AluSg/x SINE Alu 134 301 -11 200 245 38 0 chr12 10778663 10778716 -133503773 + (TATG)n Simple_repeat Simple_repeat 3 57 0 352 289 100 28 chr12 10778898 10779078 -133503411 + MIR SINE MIR 60 252 -10 2207 98 7 0 chr12 10780162 10780457 -133502032 - AluSp SINE Alu -16 297 1 218 203 136 0 chr12 10780957 10781016 -133501473 + MIR SINE MIR 186 252 -10 329 242 111 0 chr12 10781028 10781127 -133501362 + L1MC5 LINE L1 6993 7102 -859 702 164 11 98 chr12 10781161 10781344 -133501145 + L1MD2 LINE L1 6083 6249 -110 12911 136 26 40 chr12 10781344 10782000 -133500489 - Tigger1 DNA MER2_type -1 2417 1753 2743 119 22 13 chr12 10782000 10782461 -133500028 - L1PA8 LINE L1 0 6172 5708 12911 136 26 40 chr12 10782461 10784253 -133498236 - Tigger1 DNA MER2_type -665 1753 5 2198 119 0 7 chr12 10784839 10785142 -133497347 - AluSx SINE Alu -11 301 1 406 261 9 92 chr12 10785286 10785504 -133496985 + L1ME3A LINE L1 5882 6081 -89 22 80 0 0 chr12 10785954 10786004 -133496485 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr12 10786443 10786464 -133496025 + AT_rich Low_complexity Low_complexity 1 21 0 2447 70 0 0 chr12 10786676 10786977 -133495512 + AluY SINE Alu 1 301 -10 37 23 0 0 chr12 10787847 10787891 -133494598 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr12 10787946 10787992 -133494497 + AT_rich Low_complexity Low_complexity 1 46 0 3485 106 12 8 chr12 10788920 10789429 -133493060 + MER9 LTR ERVK 1 511 0 216 0 0 0 chr12 10789642 10789666 -133492823 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 9342 142 49 8 chr12 10789826 10791518 -133490971 - Tigger1 DNA MER2_type -1 2417 657 1734 259 62 14 chr12 10791537 10792098 -133490391 + LTR26 LTR ERV1 16 603 0 * 3040 178 45 14 chr12 10792098 10792738 -133489751 - Tigger1 DNA MER2_type -1758 660 1 2053 205 62 87 chr12 10792869 10793581 -133488908 - LTR8A LTR ERV1 0 727 34 234 217 36 72 chr12 10793741 10793824 -133488665 - LTR48 LTR ERV1 -128 659 580 843 186 116 28 chr12 10793953 10794168 -133488321 - MER34C LTR ERV1 -351 234 1 1725 136 66 0 chr12 10794888 10795146 -133487343 - AluSp SINE Alu -38 275 1 410 325 76 19 chr12 10795786 10796100 -133486389 - LTR16C LTR ERVL -4 487 156 2310 55 19 22 chr12 10796323 10796635 -133485854 + AluY SINE Alu 1 311 0 276 30 0 0 chr12 10796695 10796728 -133485761 + (TG)n Simple_repeat Simple_repeat 2 34 0 510 312 35 0 chr12 10797875 10798048 -133484441 + MIR SINE MIR 82 260 -2 340 331 38 19 chr12 10799317 10799474 -133483015 + MIR SINE MIR 29 188 -74 1934 100 7 52 chr12 10800559 10800868 -133481621 - AluSq SINE Alu -18 295 1 510 169 0 12 chr12 10800960 10801043 -133481446 + AluS SINE Alu 1 82 -231 24059 44 40 3 chr12 10801159 10804405 -133478084 - L1P LINE L1 -2162 3984 617 750 42 0 0 chr12 10804399 10804494 -133477995 - L1P LINE L1 -6048 98 4 * 4177 191 13 26 chr12 10804495 10805908 -133476581 - L1M2 LINE L1 -481 5810 4398 9011 97 9 3 chr12 10805908 10808075 -133474414 - L1PA8A LINE L1 0 6131 3951 480 283 6 0 chr12 10808327 10808504 -133473985 - L1P3 LINE L1 -5058 2526 2349 1537 33 0 0 chr12 10808505 10808688 -133473801 - L1PA5 LINE L1 0 6154 5972 401 0 0 0 chr12 10808688 10808734 -133473755 + L1PA5 LINE L1 5898 5943 -211 * 3504 157 10 11 chr12 10808732 10809378 -133473111 - L1MDb LINE L1 -4735 2263 990 277 174 151 0 chr12 10809387 10809473 -133473016 + L1MDb LINE L1 2259 2357 -5230 207 0 0 0 chr12 10809548 10809571 -133472918 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 620 116 0 0 chr12 10809580 10809666 -133472823 - AluSg/x SINE Alu -23 289 204 1803 116 0 8 chr12 10809666 10809916 -133472573 - AluSx SINE Alu -64 248 1 304 229 29 9 chr12 10810277 10810382 -133472107 + L1MDb LINE L1 2342 2448 -5139 3088 208 80 9 chr12 10810403 10811169 -133471320 + L1MD1 LINE L1 5423 6242 0 372 332 21 0 chr12 10811161 10811351 -133471138 + L1MDb LINE L1 2992 3185 -4580 * 24 41 0 20 chr12 10811484 10811504 -133470985 + AT_rich Low_complexity Low_complexity 1 20 -28 3075 115 4 10 chr12 10811504 10811984 -133470505 - L1PB1 LINE L1 0 6151 5675 24 41 0 20 chr12 10811984 10812012 -133470477 + AT_rich Low_complexity Low_complexity 20 48 0 842 47 0 9 chr12 10812012 10812119 -133470370 - L1PA8 LINE L1 -14 6158 6053 8409 134 30 5 chr12 10812119 10813121 -133469368 - L1P3 LINE L1 -5031 1430 383 255 31 0 0 chr12 10813121 10813153 -133469336 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8409 134 30 5 chr12 10813153 10813541 -133468948 - L1P3 LINE L1 -6078 383 6 644 227 86 20 chr12 10813775 10814092 -133468397 + MSTD LTR MaLR 3 389 -7 3259 130 34 49 chr12 10814369 10814983 -133467506 - MER4E LTR ERV1 -174 605 1 4013 138 24 5 chr12 10815480 10816112 -133466377 - LTR9B LTR ERV1 0 644 1 1905 159 88 23 chr12 10816115 10816548 -133465941 - MER65C LTR ERV1 0 461 1 481 170 30 10 chr12 10816548 10816648 -133465841 - MLT1A2 LTR MaLR -272 102 1 3044 64 21 11 chr12 10816693 10817212 -133465277 + LTR10C LTR ERV1 1 591 0 587 223 98 74 chr12 10817238 10817494 -133464995 + LTR10C-int LTR ERV1 28 289 -6360 189 0 0 0 chr12 10817497 10817518 -133464971 + (A)n Simple_repeat Simple_repeat 1 21 0 267 229 48 29 chr12 10817661 10817766 -133464723 + LTR10C-int LTR ERV1 504 610 -6039 259 152 22 0 chr12 10817758 10817804 -133464685 + LTR10C-int LTR ERV1 975 1021 -5628 * 3085 107 31 2 chr12 10817885 10818364 -133464125 + LTR15 LTR ERV1 1 493 0 6393 151 66 45 chr12 10818364 10819973 -133462516 + HERV15 LTR ERV1 1 1387 -7039 2755 254 30 12 chr12 10819963 10820620 -133461869 + HERV15 LTR ERV1 1704 2372 -6054 * 2813 202 28 14 chr12 10820593 10821173 -133461316 + HERV15 LTR ERV1 3495 4082 -4344 * 3874 221 4 22 chr12 10821166 10821998 -133460491 + HERV15 LTR ERV1 4210 5026 -3400 3272 121 2 2 chr12 10821980 10822484 -133460005 + HERV15 LTR ERV1 8231 8734 -1 * 3196 98 21 0 chr12 10822484 10822951 -133459538 + LTR15 LTR ERV1 1 477 -16 223 258 0 15 chr12 10822974 10823040 -133459449 + GA-rich Low_complexity Low_complexity 3 67 0 303 202 0 0 chr12 10823417 10823501 -133458988 + GA-rich Low_complexity Low_complexity 1 84 0 1009 131 104 0 chr12 10823565 10823786 -133458703 + BaEV-int LTR ERV1 1919 2162 -4734 316 214 0 0 chr12 10824335 10824419 -133458070 + GA-rich Low_complexity Low_complexity 1 84 0 3206 111 46 5 chr12 10824483 10825086 -133457403 + BaEV-int LTR ERV1 1919 2546 -4350 3715 291 44 40 chr12 10825262 10826957 -133455532 + BaEV-int LTR ERV1 4363 6064 -585 3275 47 13 1 chr12 10827212 10827730 -133454759 + LTR10C LTR ERV1 1 591 0 1463 200 20 18 chr12 10827730 10828093 -133454396 - MLT1-int LTR MaLR -53 1682 946 467 252 0 0 chr12 10828298 10828409 -133454080 - MLT1-int LTR MaLR -944 791 681 225 171 0 0 chr12 10828539 10828580 -133453909 - MLT1-int LTR MaLR -640 731 691 27 0 0 0 chr12 10828865 10828892 -133453597 + AT_rich Low_complexity Low_complexity 1 27 0 204 97 0 0 chr12 10829157 10829188 -133453301 + (TG)n Simple_repeat Simple_repeat 1 31 0 1919 173 3 0 chr12 10829477 10829784 -133452705 - AluSx SINE Alu -4 308 1 1937 125 61 7 chr12 10829852 10830149 -133452340 - AluSq SINE Alu 0 313 1 356 362 26 18 chr12 10830758 10830987 -133451502 + MIR SINE MIR 18 248 -14 649 323 21 10 chr12 10831409 10831697 -133450792 + L1ME1 LINE L1 310 600 -5796 792 259 83 4 chr12 10831697 10832156 -133450333 + L1ME1 LINE L1 2739 3233 -2982 1261 254 78 85 chr12 10832167 10832275 -133450214 + L1ME1 LINE L1 5434 5541 -694 2100 124 0 0 chr12 10832275 10832587 -133449902 - AluSx SINE Alu 0 312 1 1261 254 78 85 chr12 10832587 10833276 -133449213 + L1ME1 LINE L1 5541 6226 -9 215 224 103 0 chr12 10833313 10833371 -133449118 + MIR SINE MIR 101 164 -98 1634 133 4 0 chr12 10834341 10834566 -133447923 + AluSx SINE Alu 1 226 -86 1002 116 0 0 chr12 10834566 10834704 -133447785 + AluSg/x SINE Alu 163 300 -10 2589 40 3 0 chr12 10835530 10835833 -133446656 - AluY SINE Alu -7 304 1 1963 246 64 76 chr12 10835904 10836690 -133445799 + L1M2b LINE L1 1 776 -6433 * 1969 161 28 28 chr12 10836674 10837096 -133445393 + L1M2b LINE L1 2759 3180 -4029 1048 311 38 46 chr12 10837096 10837656 -133444833 + L1MA5 LINE L1 23 577 -6988 3646 212 29 24 chr12 10837657 10839363 -133443126 + L1MA5 LINE L1 2582 4304 -3261 * 5276 156 39 13 chr12 10839357 10840829 -133441660 + L1MA5 LINE L1 5686 7221 -498 309 26 0 0 chr12 10840829 10840867 -133441622 + (CA)n Simple_repeat Simple_repeat 1 38 0 5276 156 39 13 chr12 10840867 10841379 -133441110 + L1MA5 LINE L1 7221 7718 -1 266 257 99 69 chr12 10841603 10841805 -133440684 - L1MC/D LINE L1 -2060 5748 5541 30 0 0 0 chr12 10842210 10842240 -133440249 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr12 10842941 10842969 -133439520 + AT_rich Low_complexity Low_complexity 1 28 0 1978 113 88 0 chr12 10843030 10843313 -133439176 - AluSx SINE Alu -4 308 1 524 118 0 0 chr12 10843478 10843563 -133438926 - L1PA14 LINE L1 -2 6159 6075 24 53 0 0 chr12 10843569 10843607 -133438882 + AT_rich Low_complexity Low_complexity 1 38 0 253 88 0 0 chr12 10844663 10844697 -133437792 + U2 snRNA snRNA 1 34 -154 185 81 0 54 chr12 10844818 10844855 -133437634 + (CAT)n Simple_repeat Simple_repeat 2 36 0 210 71 0 0 chr12 10845382 10845410 -133437079 + (CA)n Simple_repeat Simple_repeat 2 29 0 283 122 20 0 chr12 10845668 10845717 -133436772 + MADE1 DNA Mariner 1 50 -30 422 305 51 16 chr12 10845769 10846098 -133436391 + L1M4 LINE L1 4574 4920 -1226 25 0 0 0 chr12 10846143 10846168 -133436321 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr12 10846284 10846318 -133436171 + AT_rich Low_complexity Low_complexity 1 34 0 301 319 0 18 chr12 10846461 10846574 -133435915 - L2 LINE L2 -4 3309 3199 2309 105 0 7 chr12 10846579 10846883 -133435606 - AluSq SINE Alu -11 302 1 301 120 0 0 chr12 10850092 10850142 -133432347 + LTR5 LTR ERVK 1 50 -919 1050 228 51 92 chr12 10850143 10850651 -133431838 + LTR5 LTR ERVK 483 969 0 492 250 52 23 chr12 10851076 10851248 -133431241 + LTR41 LTR ERVL 1 177 -596 180 304 71 45 chr12 10851427 10851539 -133430950 - L3 LINE CR1 -214 1363 1249 1474 165 69 0 chr12 10851715 10851975 -133430514 + AluSx SINE Alu 16 293 -19 316 269 29 76 chr12 10852734 10852905 -133429584 + L1M4 LINE L1 78 240 -6302 2339 148 14 50 chr12 10853210 10853711 -133428778 - L1MA6 LINE L1 0 6300 5818 279 0 0 0 chr12 10853824 10853855 -133428634 + (CA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr12 10853973 10853996 -133428493 + AT_rich Low_complexity Low_complexity 1 23 0 529 288 55 18 chr12 10854111 10854546 -133427943 + L1M4 LINE L1 1026 1480 -5062 25 31 0 0 chr12 10854807 10854839 -133427650 + AT_rich Low_complexity Low_complexity 1 32 0 21 95 0 0 chr12 10855620 10855683 -133426806 + AT_rich Low_complexity Low_complexity 1 63 0 1484 158 55 28 chr12 10855805 10856059 -133426430 - AluJo SINE Alu -51 261 1 39 0 0 0 chr12 10856232 10856271 -133426218 + AT_rich Low_complexity Low_complexity 1 39 0 2319 115 3 0 chr12 10856469 10856773 -133425716 + AluSx SINE Alu 1 305 -7 626 238 33 33 chr12 10856781 10856962 -133425527 - MLT1E1 LTR MaLR -469 185 5 1742 178 6 16 chr12 10857021 10857336 -133425153 - AluJb SINE Alu 0 312 1 186 43 0 0 chr12 10857400 10857423 -133425066 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 3638 45 2 0 chr12 10857423 10857889 -133424600 - L1PA8 LINE L1 -24 6148 5682 2397 126 114 7 chr12 10857948 10858353 -133424136 + MER83 LTR ERV1 1 448 0 2447 141 0 3 chr12 10858357 10858733 -133423756 - THE1C LTR MaLR 0 375 1 2404 66 3 3 chr12 10859197 10859500 -133422989 + AluY SINE Alu 1 303 -8 799 251 38 0 chr12 10859614 10859825 -133422664 - MER58A DNA MER1_type 0 224 6 1676 243 36 60 chr12 10860004 10860492 -133421997 + MLT1F LTR MaLR 1 476 -66 2244 102 7 7 chr12 10860492 10860797 -133421692 - AluSx SINE Alu -3 309 5 1676 243 36 60 chr12 10860797 10860863 -133421626 + MLT1F LTR MaLR 476 542 0 426 320 27 20 chr12 10860979 10861273 -133421216 + MLT1F-int LTR MaLR 286 581 -790 339 270 98 78 chr12 10861804 10862100 -133420389 + MLT1F-int LTR MaLR 1055 1356 -15 1574 249 47 38 chr12 10862117 10862650 -133419839 + MLT1F LTR MaLR 5 542 0 2091 135 0 0 chr12 10862687 10862983 -133419506 - AluSx SINE Alu -16 296 1 252 327 9 18 chr12 10863153 10863266 -133419223 - HAL1 LINE L1 -586 1921 1810 1349 284 69 33 chr12 10863319 10864135 -133418354 - L1ME3 LINE L1 -2 6160 5316 624 253 65 27 chr12 10864150 10864486 -133418003 - L1ME1 LINE L1 -9 6157 5809 2137 147 0 0 chr12 10864486 10864798 -133417691 - AluSx SINE Alu 0 312 1 2280 160 10 2 chr12 10864869 10865276 -133417213 - L1PA15 LINE L1 -1 6164 5755 917 235 50 87 chr12 10865297 10865915 -133416574 - L1ME1 LINE L1 -1669 4477 3883 2258 199 28 8 chr12 10865998 10866908 -133415581 - L1MB1 LINE L1 -1 6167 5193 265 206 0 15 chr12 10866926 10866994 -133415495 - MER4A LTR ERV1 0 664 598 296 143 20 0 chr12 10867114 10867163 -133415326 - MER4A LTR ERV1 -354 310 261 529 124 21 10 chr12 10867163 10867260 -133415229 - MER4A LTR ERV1 -566 98 1 6115 252 67 13 chr12 10867260 10869104 -133413385 - L1 LINE L1 -967 5003 2839 2129 134 30 33 chr12 10869104 10869469 -133413020 - THE1B LTR MaLR 0 364 1 6115 252 67 13 chr12 10869469 10870223 -133412266 - L1 LINE L1 -3131 2839 2127 1443 300 72 25 chr12 10870232 10870898 -133411591 - L1 LINE L1 -5194 697 1 244 188 59 0 chr12 10870910 10870995 -133411494 + (TA)n Simple_repeat Simple_repeat 1 90 0 531 360 45 11 chr12 10872521 10872962 -133409527 + L1M4 LINE L1 2274 2729 -3417 550 221 9 0 chr12 10873033 10873146 -133409343 - Tigger2 DNA MER2_type -10 2708 2595 3466 57 0 11 chr12 10873352 10873805 -133408684 - LTR7 LTR ERV1 -2 448 1 2415 66 48 13 chr12 10873805 10874182 -133408307 - HERVH LTR ERV1 0 7713 7324 1376 116 19 0 chr12 10874182 10874398 -133408091 - HERVH LTR ERV1 -1894 5819 5600 2898 147 0 6 chr12 10874399 10874997 -133407492 - HERVH LTR ERV1 -2564 5149 4488 3207 109 0 4 chr12 10874999 10875495 -133406994 - HERVH LTR ERV1 -3720 3993 3500 720 159 41 0 chr12 10875494 10875639 -133406850 - HERVH LTR ERV1 -4423 3290 3140 * 18861 94 29 11 chr12 10875633 10878567 -133403922 - HERVH LTR ERV1 -4726 2987 1 3396 55 4 11 chr12 10878569 10879020 -133403469 - LTR7 LTR ERV1 -2 448 1 1815 133 40 37 chr12 10879717 10880017 -133402472 - AluSx SINE Alu -11 301 1 1229 270 70 41 chr12 10880517 10880824 -133401665 - L1ME3 LINE L1 0 6162 5865 6409 93 12 24 chr12 10880824 10881922 -133400567 - L1PA11 LINE L1 -7 6167 5069 1229 270 70 41 chr12 10881922 10882196 -133400293 - L1ME3 LINE L1 -297 5865 5564 2820 128 9 9 chr12 10882247 10882706 -133399783 + LOR1a LTR ERV1 2 460 -37 257 231 104 22 chr12 10882804 10882938 -133399551 - L1M2 LINE L1 -853 5447 5303 359 268 3 86 chr12 10883018 10883155 -133399334 - L1ME3 LINE L1 -1540 4606 4506 2496 59 0 7 chr12 10883155 10883459 -133399030 - AluY SINE Alu -9 302 1 359 268 3 86 chr12 10883459 10883623 -133398866 - L1ME3 LINE L1 -1640 4506 4330 369 199 119 26 chr12 10883638 10883789 -133398700 - L1MA10 LINE L1 0 6334 6170 347 404 63 9 chr12 10883891 10884144 -133398345 - L1ME LINE L1 -5573 497 230 25 31 0 0 chr12 10884220 10884252 -133398237 + AT_rich Low_complexity Low_complexity 1 32 0 780 168 46 5 chr12 10884253 10884449 -133398040 - L1MA7 LINE L1 -7 6284 6081 1659 156 9 32 chr12 10884553 10884899 -133397590 - L1MA7 LINE L1 -158 6133 5796 22 0 0 0 chr12 10884911 10884933 -133397556 + AT_rich Low_complexity Low_complexity 1 22 0 11972 25 3 0 chr12 10884933 10887146 -133395343 - L1PA3 LINE L1 0 6155 3978 534 293 67 0 chr12 10887305 10887469 -133395020 - MIR SINE MIR -48 214 40 2135 95 0 30 chr12 10887475 10887780 -133394709 + AluSx SINE Alu 5 300 -12 812 213 6 29 chr12 10887864 10888038 -133394451 - AluJo/FRAM SINE Alu -11 301 132 1561 201 4 0 chr12 10888039 10888313 -133394176 - AluJo SINE Alu -7 305 31 1507 168 0 15 chr12 10888549 10888811 -133393678 - AluJo SINE Alu -54 258 1 2314 145 67 48 chr12 10888904 10889490 -133392999 - L1MB8 LINE L1 -9 6169 5573 9871 193 35 6 chr12 10889722 10889999 -133392490 - L1PA12 LINE L1 -2172 5412 5145 2015 110 43 3 chr12 10889999 10890281 -133392208 - AluSc SINE Alu -16 293 1 9871 193 35 6 chr12 10890281 10892879 -133389610 - L1PA12 LINE L1 -2439 5145 2442 9632 105 25 2 chr12 10892884 10894481 -133388008 - L1P3 LINE L1 -702 5767 4151 8543 140 18 22 chr12 10894476 10895936 -133386553 - L1P3 LINE L1 -4979 1482 29 * 4065 249 26 12 chr12 10895947 10897378 -133385111 - L1PA12 LINE L1 -3745 3839 2302 600 325 35 89 chr12 10897371 10898583 -133383906 - L1PA12 LINE L1 -5502 2079 182 * 2300 251 95 20 chr12 10898576 10899277 -133383212 + L1 LINE L1 2698 3345 -4220 2189 145 16 26 chr12 10899277 10899656 -133382833 + THE1C LTR MaLR 1 375 0 2300 251 95 20 chr12 10899656 10900544 -133381945 + L1 LINE L1 3345 4409 -3156 3435 242 39 16 chr12 10900657 10901755 -133380734 + L1 LINE L1 5416 6538 -1027 30107 115 13 59 chr12 10901767 10908208 -133374281 + L1PA7 LINE L1 12 6141 -13 2100 123 3 10 chr12 10908975 10909283 -133373206 - AluSx SINE Alu -6 306 1 740 266 188 7 chr12 10909303 10909596 -133372893 - MLT1F1 LTR MaLR -3 564 219 232 191 21 0 chr12 10909625 10909672 -133372817 + GA-rich Low_complexity Low_complexity 1 48 0 227 227 27 53 chr12 10909683 10909758 -133372731 - MLT1F1 LTR MaLR -566 88 16 544 304 78 14 chr12 10910252 10910611 -133371878 + L1ME4a LINE L1 5494 5875 -246 1826 151 0 7 chr12 10910821 10911112 -133371377 + AluSx SINE Alu 1 289 -23 1581 186 0 55 chr12 10911189 10911516 -133370973 + AluJo SINE Alu 1 309 -3 226 406 105 0 chr12 10911517 10911650 -133370839 - L2 LINE L2 -3 3269 3123 3364 145 40 0 chr12 10911887 10912479 -133370010 - Tigger3b DNA MER2_type -615 616 1 25 75 0 0 chr12 10912568 10912621 -133369868 + AT_rich Low_complexity Low_complexity 1 53 0 2159 194 37 71 chr12 10912717 10913280 -133369209 + MLT2B3 LTR ERVL 4 547 -7 527 269 0 0 chr12 10913677 10913796 -133368693 - MLT1A1 LTR MaLR -2 363 245 24 77 0 0 chr12 10913961 10914013 -133368476 + AT_rich Low_complexity Low_complexity 1 52 0 4481 118 4 13 chr12 10914120 10914831 -133367658 + L1MA2 LINE L1 5600 6304 0 249 154 26 64 chr12 10915349 10915427 -133367062 - MER3 DNA MER1_type -82 127 100 360 283 82 0 chr12 10915467 10915626 -133366863 + L1M4 LINE L1 4204 4375 -3190 354 278 59 30 chr12 10915716 10915885 -133366604 + L1M4 LINE L1 4492 4665 -2900 24 32 0 0 chr12 10915909 10915940 -133366549 + AT_rich Low_complexity Low_complexity 1 31 0 277 191 0 0 chr12 10915962 10916021 -133366468 - Alu SINE Alu -256 47 1 463 301 112 47 chr12 10916096 10916442 -133366047 + L1M4 LINE L1 4805 5127 -2438 2122 123 0 0 chr12 10916442 10916743 -133365746 - AluSc SINE Alu -8 301 1 463 301 112 47 chr12 10916743 10917556 -133364933 + L1M4 LINE L1 5127 6039 -1526 1012 266 11 7 chr12 10917562 10917840 -133364649 - L1MB7 LINE L1 -11 6173 5895 230 238 0 16 chr12 10919082 10919145 -133363344 + L1MA10 LINE L1 461 522 -6967 4381 208 90 7 chr12 10919151 10920534 -133361955 + L1MA10 LINE L1 6242 7749 -4 1600 157 68 0 chr12 10920565 10920858 -133361631 + L1MB2 LINE L1 5817 6129 -42 1753 185 71 19 chr12 10920893 10921261 -133361228 + L1MC1 LINE L1 5902 6288 -45 592 251 50 32 chr12 10921263 10921482 -133361007 + L1M4 LINE L1 6180 6402 -1163 4340 161 56 5 chr12 10921489 10922445 -133360044 + L1PA15 LINE L1 5161 6160 -5 29 0 0 0 chr12 10922540 10922569 -133359920 + AT_rich Low_complexity Low_complexity 1 29 0 430 291 157 22 chr12 10922645 10923009 -133359480 + L1 LINE L1 2227 2639 -3507 232 179 45 0 chr12 10923179 10923246 -133359243 - MER3 DNA MER1_type -87 122 100 322 312 65 0 chr12 10923275 10923445 -133359044 + L1 LINE L1 2778 2958 -3188 306 289 78 58 chr12 10923521 10924060 -133358429 + L1 LINE L1 3080 3629 -2517 388 329 101 39 chr12 10924127 10924483 -133358006 + L1 LINE L1 3763 4140 -2006 1807 145 65 6 chr12 10924484 10924821 -133357668 + L1 LINE L1 4578 4934 -1212 2659 202 13 13 chr12 10924841 10925375 -133357114 - MER44D DNA MER2_type -1 604 16 27 73 0 0 chr12 10925626 10925681 -133356808 + AT_rich Low_complexity Low_complexity 1 55 0 1531 292 72 8 chr12 10926210 10926720 -133355769 + L1MDb LINE L1 14 556 -5853 555 280 111 30 chr12 10926752 10927084 -133355405 + L1ME3A LINE L1 5804 6162 -8 310 285 62 36 chr12 10927077 10927270 -133355219 + L1ME3A LINE L1 5689 5886 -284 * 22 0 0 0 chr12 10927572 10927594 -133354895 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 10928128 10928151 -133354338 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 10929540 10929568 -133352921 + AT_rich Low_complexity Low_complexity 1 28 0 311 321 176 14 chr12 10930114 10930335 -133352154 + MIR SINE MIR 3 259 -3 1454 64 35 10 chr12 10931072 10931274 -133351215 + AluY SINE Alu 98 304 -7 21 0 0 0 chr12 10931697 10931718 -133350771 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 10931912 10931933 -133350556 + AT_rich Low_complexity Low_complexity 1 21 0 1251 161 13 25 chr12 10932172 10932408 -133350081 + AluJb SINE Alu 4 236 -76 289 138 25 50 chr12 10932734 10932814 -133349675 - MER3 DNA MER1_type -79 130 100 434 294 90 54 chr12 10933115 10933297 -133349192 + L1M4 LINE L1 3389 3563 -2583 2818 43 0 0 chr12 10933297 10933643 -133348846 - L1PA6 LINE L1 -1 6153 5808 434 294 90 54 chr12 10933643 10933903 -133348586 + L1M4 LINE L1 3563 3847 -2299 503 245 143 98 chr12 10934136 10934238 -133348251 + L1M4 LINE L1 4106 4202 -1944 1674 30 0 0 chr12 10934238 10934441 -133348048 + L1PA4 LINE L1 5953 6155 0 503 245 143 98 chr12 10934441 10934819 -133347670 + L1M4 LINE L1 4202 4608 -1538 976 266 14 11 chr12 10934843 10935121 -133347368 - L1MB7 LINE L1 -11 6173 5895 1479 161 46 52 chr12 10935620 10935904 -133346585 - MER44D DNA MER2_type -1882 605 267 1476 96 45 0 chr12 10935904 10936124 -133346365 - MER30 DNA MER1_type 0 230 1 1479 161 46 52 chr12 10936124 10936168 -133346321 - MER44D DNA MER2_type -2220 267 224 1401 257 110 14 chr12 10936909 10937400 -133345089 + L1MDb LINE L1 15 552 -5857 21 36 0 0 chr12 10937942 10937970 -133344519 + AT_rich Low_complexity Low_complexity 1 28 0 3655 193 14 0 chr12 10938744 10939449 -133343040 + L1PA16 LINE L1 5447 6161 -5 26 0 0 0 chr12 10941017 10941043 -133341446 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr12 10942044 10942080 -133340409 + AT_rich Low_complexity Low_complexity 1 36 0 962 249 138 7 chr12 10942501 10942904 -133339585 - L1M4c LINE L1 -3649 2733 2276 248 150 0 0 chr12 10942914 10942954 -133339535 - Alu SINE Alu -20 282 243 3748 199 22 50 chr12 10942954 10944273 -133338216 - L1P3 LINE L1 -4280 2181 842 894 237 75 13 chr12 10944275 10944583 -133337906 - L1M4c LINE L1 -4759 1625 1299 2401 43 0 0 chr12 10944611 10944920 -133337569 + AluY SINE Alu 1 309 0 298 305 34 0 chr12 10944937 10945055 -133337434 - L1M4 LINE L1 -2579 3455 3334 7111 185 10 15 chr12 10945307 10947480 -133335009 + L1PA14 LINE L1 3991 6160 -1 4743 191 11 9 chr12 10947477 10948156 -133334333 + L1PA16 LINE L1 4243 4919 -1247 1899 225 47 64 chr12 10948156 10948779 -133333710 - LTR9 LTR ERV1 0 612 1 4743 191 11 9 chr12 10948779 10949915 -133332574 + L1PA16 LINE L1 4919 6059 -107 448 58 0 14 chr12 10949918 10949987 -133332502 + L1PA16 LINE L1 6099 6166 0 393 233 15 15 chr12 10949965 10950098 -133332391 + L1 LINE L1 5029 5161 -985 * 2156 262 37 17 chr12 10950120 10951175 -133331314 - L1M4 LINE L1 -4516 1449 445 217 354 152 0 chr12 10951266 10951365 -133331124 + MIR SINE MIR 32 145 -63 231 336 3 25 chr12 10951514 10951695 -133330794 + C-rich Low_complexity Low_complexity 1 309 0 641 287 99 14 chr12 10952048 10952271 -133330218 - L1ME LINE L1 -405 5765 5524 2177 117 0 0 chr12 10952278 10952576 -133329913 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr12 10952646 10952669 -133329820 + AT_rich Low_complexity Low_complexity 1 23 0 196 328 67 118 chr12 10952723 10953577 -133328912 + L2 LINE L2 2003 2812 -502 282 296 14 0 chr12 10953917 10953988 -133328501 + L2 LINE L2 3200 3271 -1 352 287 13 20 chr12 10954318 10954468 -133328021 + (TA)n Simple_repeat Simple_repeat 1 149 0 54 0 0 0 chr12 10954541 10954595 -133327894 + AT_rich Low_complexity Low_complexity 1 54 0 22500 40 8 1 chr12 10955095 10956010 -133326479 - L1P LINE L1 -1931 4215 3307 222 37 0 0 chr12 10956010 10956037 -133326452 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 22500 40 8 1 chr12 10956037 10956232 -133326257 - L1P LINE L1 -2839 3307 3115 2173 105 10 0 chr12 10956232 10956528 -133325961 - AluY SINE Alu -11 300 2 22500 40 8 1 chr12 10956528 10958231 -133324258 - L1P LINE L1 -3031 3115 1383 1973 204 67 10 chr12 10958350 10958855 -133323634 + L1MA10 LINE L1 4530 5063 -1083 4429 131 5 25 chr12 10958951 10959705 -133322784 - L1PA16 LINE L1 -14 6152 5414 833 159 78 65 chr12 10959710 10959942 -133322547 - L1 LINE L1 -1339 4807 4573 3662 164 63 94 chr12 10959974 10960445 -133322044 + L1MA10 LINE L1 5114 5598 -736 486 83 0 0 chr12 10960445 10960517 -133321972 + (TA)n Simple_repeat Simple_repeat 2 73 0 3662 164 63 94 chr12 10960517 10961318 -133321171 + L1MA10 LINE L1 5598 6333 -1 26 0 0 0 chr12 10961414 10961440 -133321049 + AT_rich Low_complexity Low_complexity 1 26 0 191 36 36 0 chr12 10963611 10963639 -133318850 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1631 126 61 4 chr12 10963640 10963901 -133318588 - AluSx SINE Alu -36 276 1 240 35 0 0 chr12 10964540 10964569 -133317920 + (A)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr12 10965504 10965532 -133316957 + AT_rich Low_complexity Low_complexity 1 28 0 38 43 0 0 chr12 10965823 10965870 -133316619 + AT_rich Low_complexity Low_complexity 1 47 0 180 111 0 0 chr12 10966371 10966398 -133316091 + (TTG)n Simple_repeat Simple_repeat 2 28 0 402 320 55 47 chr12 10966419 10966781 -133315708 + L2 LINE L2 2129 2493 -821 1791 153 3 3 chr12 10966810 10967092 -133315397 - AluJb SINE Alu -30 282 1 337 372 46 25 chr12 10967390 10967586 -133314903 + L2 LINE L2 3073 3272 0 272 343 57 0 chr12 10967591 10967696 -133314793 - L2 LINE L2 -4 3309 3199 2839 9 0 0 chr12 10968099 10968414 -133314075 + AluYb8 SINE Alu 1 315 -3 3376 249 75 6 chr12 10968972 10970168 -133312321 - L1MCc LINE L1 -2377 4564 3286 1832 135 52 40 chr12 10970168 10970710 -133311779 + MER51A LTR ERV1 1 634 0 298 212 62 26 chr12 10970715 10970828 -133311661 - L1MCc LINE L1 -3650 3291 3175 511 271 52 40 chr12 10970916 10971374 -133311115 - L1MCc LINE L1 -4887 1536 1297 684 293 48 0 chr12 10971421 10971629 -133310860 - L1MCc LINE L1 -5232 1191 974 881 279 73 11 chr12 10971859 10972296 -133310193 - L1MEc LINE L1 -3138 3077 2614 * 1887 161 42 0 chr12 10972270 10972623 -133309866 + L1MA4A LINE L1 5914 6281 -22 1016 270 77 18 chr12 10972657 10973309 -133309180 - L1MEc LINE L1 -3596 2619 1965 339 262 55 86 chr12 10973354 10973601 -133308888 - L1MEc LINE L1 -5096 1300 1062 2086 108 24 0 chr12 10973601 10973889 -133308600 - AluSp SINE Alu -14 299 5 339 262 55 86 chr12 10973889 10973931 -133308558 - L1MEc LINE L1 -5334 1062 1020 7913 211 19 7 chr12 10973974 10975826 -133306663 + L1 LINE L1 2725 4599 -1547 2301 243 7 3 chr12 10975814 10976379 -133306110 - L1MA8 LINE L1 -318 5973 5407 * 7793 18 0 0 chr12 10976480 10977817 -133304672 + L1PA3 LINE L1 4814 6152 -3 243 339 62 27 chr12 10978275 10978499 -133303990 + Charlie8 DNA MER1_type 32 263 -2154 235 177 25 114 chr12 10978691 10978770 -133303719 - MIR SINE MIR -64 144 73 205 200 0 0 chr12 10978785 10978825 -133303664 + (TA)n Simple_repeat Simple_repeat 2 41 0 324 340 111 19 chr12 10979166 10979328 -133303161 + MIR3 SINE MIR 20 196 -12 826 213 0 0 chr12 10979483 10979638 -133302851 + FRAM SINE Alu 1 153 -23 23 0 0 0 chr12 10979638 10979661 -133302828 + AT_rich Low_complexity Low_complexity 1 23 0 553 284 90 9 chr12 10979903 10980114 -133302375 + MLT1L LTR MaLR 167 394 -221 192 200 0 0 chr12 10980248 10980293 -133302196 + (TA)n Simple_repeat Simple_repeat 2 46 0 26 74 0 0 chr12 10980402 10980456 -133302033 + AT_rich Low_complexity Low_complexity 1 54 0 747 265 67 36 chr12 10983143 10983366 -133299123 + MIR SINE MIR 18 247 -15 24 32 0 0 chr12 10983685 10983716 -133298773 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr12 10984061 10984089 -133298400 + AT_rich Low_complexity Low_complexity 1 28 0 971 273 11 7 chr12 10985173 10985451 -133297038 - L1MB7 LINE L1 -11 6173 5895 1572 169 24 39 chr12 10985947 10986240 -133296249 - MER44D DNA MER2_type -1883 604 260 1382 85 66 0 chr12 10986240 10986452 -133296037 - MER30 DNA MER1_type 0 230 5 1572 169 24 39 chr12 10986452 10986489 -133296000 - MER44D DNA MER2_type -2227 260 224 1625 249 62 15 chr12 10987231 10987750 -133294739 + L1MDb LINE L1 14 556 -5853 603 263 66 38 chr12 10987779 10988068 -133294421 + L1ME3A LINE L1 5799 6095 -75 369 296 41 41 chr12 10988134 10988330 -133294159 + L1ME3A LINE L1 5691 5886 -284 22 35 0 0 chr12 10989011 10989040 -133293449 + AT_rich Low_complexity Low_complexity 1 29 0 685 203 34 82 chr12 10989507 10989669 -133292820 - MER44D DNA MER2_type -2012 475 269 1379 107 70 0 chr12 10989669 10989884 -133292605 - MER30 DNA MER1_type 0 230 1 685 203 34 82 chr12 10989884 10989928 -133292561 - MER44D DNA MER2_type -2218 269 224 21 0 0 0 chr12 10990055 10990076 -133292413 + AT_rich Low_complexity Low_complexity 1 21 0 1425 254 108 30 chr12 10990672 10991171 -133291318 + L1MDb LINE L1 15 552 -5857 468 283 71 50 chr12 10991209 10991492 -133290997 + L1ME3A LINE L1 5807 6095 -75 23 54 0 0 chr12 10992633 10992670 -133289819 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr12 10993040 10993076 -133289413 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr12 10995396 10995417 -133287072 + AT_rich Low_complexity Low_complexity 1 21 0 258 289 213 25 chr12 10995687 10995884 -133286605 + MIR SINE MIR 26 259 -3 22 0 0 0 chr12 10996163 10996185 -133286304 + AT_rich Low_complexity Low_complexity 1 22 0 1276 175 61 54 chr12 10997507 10997634 -133284855 + AluJb SINE Alu 3 128 -184 216 0 0 0 chr12 10997634 10997658 -133284831 + (TA)n Simple_repeat Simple_repeat 2 25 0 1276 175 61 54 chr12 10997658 10997827 -133284662 + AluJb SINE Alu 128 301 -11 1948 101 0 11 chr12 10997950 10998218 -133284271 - AluSg SINE Alu -45 265 1 21 71 0 0 chr12 10998335 10998377 -133284112 + AT_rich Low_complexity Low_complexity 1 42 0 5621 166 55 7 chr12 10998638 10999803 -133282686 - Tigger3b DNA MER2_type -10 1221 1 831 148 0 16 chr12 11000858 11000986 -133281503 - AluJb SINE Alu -185 127 2 30 83 0 0 chr12 11001078 11001150 -133281339 + AT_rich Low_complexity Low_complexity 1 72 0 22 70 0 0 chr12 11002697 11002740 -133279749 + AT_rich Low_complexity Low_complexity 1 43 0 2530 165 78 0 chr12 11002996 11003499 -133278990 - L1 LINE L1 -922 5224 4683 259 258 0 0 chr12 11003512 11003578 -133278911 + L1M3 LINE L1 5370 5435 -748 * 1108 185 52 43 chr12 11003558 11003651 -133278838 + L1M2 LINE L1 2698 2789 -4059 990 62 0 42 chr12 11003651 11003795 -133278694 + L1PA10 LINE L1 6022 6159 -9 1108 185 52 43 chr12 11003795 11004147 -133278342 + L1M2 LINE L1 2789 3143 -3705 1305 193 73 0 chr12 11004157 11004432 -133278057 - MER2 DNA MER2_type 0 345 51 232 250 0 0 chr12 11004440 11004492 -133277997 + LTR30 LTR ERV1 1 52 -670 1784 155 114 49 chr12 11004492 11005160 -133277329 + pTR5 LTR ERV1 57 2032 -406 292 232 0 0 chr12 11005165 11005234 -133277255 + LTR30 LTR ERV1 556 624 -98 366 369 0 0 chr12 11005435 11005611 -133276878 + C-rich Low_complexity Low_complexity 1 176 0 263 308 17 41 chr12 11005581 11005753 -133276736 + CT-rich Low_complexity Low_complexity 2 169 0 * 188 88 29 0 chr12 11006236 11006270 -133276219 - L2 LINE L2 -1 3312 3278 406 282 81 38 chr12 11007066 11007463 -133275026 - HAL1b LINE L1 -149 1199 786 1429 238 134 10 chr12 11007812 11008334 -133274155 + L1MCc LINE L1 23 609 -5814 1396 187 21 32 chr12 11008526 11008810 -133273679 - AluJo SINE Alu -30 282 2 1979 124 35 3 chr12 11008820 11009110 -133273379 - AluSc SINE Alu -10 299 1 304 302 92 49 chr12 11009187 11009492 -133272997 + L1ME4a LINE L1 5734 6051 -70 214 313 16 0 chr12 11009611 11009675 -133272814 + L2 LINE L2 3206 3270 -2 23 54 0 0 chr12 11009727 11009764 -133272725 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr12 11010228 11010260 -133272229 + AT_rich Low_complexity Low_complexity 1 32 0 2240 88 3 0 chr12 11012141 11012437 -133270052 + AluY SINE Alu 1 297 -14 47 0 0 0 chr12 11012784 11012831 -133269658 + AT_rich Low_complexity Low_complexity 1 47 0 297 288 68 25 chr12 11013132 11013250 -133269239 + MIR SINE MIR 26 148 -114 189 0 0 0 chr12 11013924 11013945 -133268544 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 8089 126 27 8 chr12 11013945 11015194 -133267295 + L1P LINE L1 4 1276 -4870 3427 199 16 28 chr12 11015344 11016198 -133266291 - L1 LINE L1 -1741 4405 3562 2636 104 17 26 chr12 11016221 11016567 -133265922 - L1PB2 LINE L1 -6 6145 5802 318 50 0 0 chr12 11016567 11016607 -133265882 + (TG)n Simple_repeat Simple_repeat 2 41 0 2636 104 17 26 chr12 11016607 11016682 -133265807 - L1PB2 LINE L1 -349 5802 5728 229 395 151 6 chr12 11017748 11017920 -133264569 - MIR3 SINE MIR -4 204 8 253 288 56 56 chr12 11017970 11018095 -133264394 + L2 LINE L2 2880 3004 -268 185 307 53 79 chr12 11018112 11018226 -133264263 - L2 LINE L2 0 3272 3162 196 306 0 0 chr12 11018236 11018285 -133264204 + L2 LINE L2 3004 3052 -220 315 247 0 54 chr12 11018348 11018441 -133264048 - L1MC4 LINE L1 -1342 6700 6613 23 33 0 0 chr12 11018452 11018482 -133264007 + AT_rich Low_complexity Low_complexity 1 30 0 291 222 0 0 chr12 11018835 11018916 -133263573 + (TA)n Simple_repeat Simple_repeat 1 81 0 2355 199 13 68 chr12 11018932 11019459 -133263030 - MLT2B3 LTR ERVL -54 500 3 193 176 226 49 chr12 11019533 11019635 -133262854 + L2 LINE L2 3193 3312 -1 1711 183 3 0 chr12 11020066 11020350 -133262139 - AluJb SINE Alu -27 285 1 300 305 91 27 chr12 11021048 11021235 -133261254 - L1ME LINE L1 -684 5478 5280 8735 197 15 46 chr12 11021329 11023859 -133258630 - L1PA16 LINE L1 -107 6059 3451 2365 126 31 8 chr12 11023859 11024215 -133258274 + THE1B LTR MaLR 1 364 0 11628 98 6 1 chr12 11024215 11025787 -133256702 + THE1B-int LTR MaLR 1 1580 0 2199 131 34 20 chr12 11025787 11026145 -133256344 + THE1B LTR MaLR 1 363 -1 8735 197 15 46 chr12 11026145 11026755 -133255734 - L1PA16 LINE L1 -2712 3454 3023 9438 173 72 50 chr12 11026760 11027853 -133254636 - L1 LINE L1 -897 6668 5601 595 98 11 0 chr12 11027853 11027945 -133254544 + AluSg/x SINE Alu 217 309 0 9438 173 72 50 chr12 11027945 11029103 -133253386 - L1 LINE L1 -1964 5601 4274 4876 119 25 12 chr12 11029219 11030053 -133252436 - L1 LINE L1 -4247 3318 2474 802 259 0 71 chr12 11030054 11030336 -133252153 - L1MD3 LINE L1 -26 7969 7708 24 0 0 0 chr12 11030812 11030836 -133251653 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 11031449 11031472 -133251017 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 11032345 11032366 -133250123 + AT_rich Low_complexity Low_complexity 1 21 0 898 231 11 0 chr12 11033402 11033584 -133248905 + MER5A DNA MER1_type 6 189 0 2469 133 81 7 chr12 11033795 11034253 -133248236 - L1MA9 LINE L1 0 6312 5821 5179 64 1 1 chr12 11034963 11036148 -133246341 + L1PA5 LINE L1 4718 5902 -252 5908 17 16 0 chr12 11036281 11036986 -133245503 - L1P LINE L1 -3295 2851 2136 3742 18 7 2 chr12 11036986 11037442 -133245047 + L1P LINE L1 4247 4704 -1442 338 188 0 0 chr12 11037552 11037616 -133244873 - MER4B LTR ERV1 -546 64 1 398 299 118 33 chr12 11037790 11038001 -133244488 - L3 LINE CR1 -7 1570 1342 21 57 0 0 chr12 11038883 11038918 -133243571 + GC_rich Low_complexity Low_complexity 1 35 0 3913 126 6 14 chr12 11039239 11039890 -133242599 + L1MA2 LINE L1 5659 6304 0 221 91 0 0 chr12 11040583 11040616 -133241873 + (G)n Simple_repeat Simple_repeat 1 33 0 185 62 0 31 chr12 11040860 11040892 -133241597 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 2381 166 25 37 chr12 11041326 11041814 -133240675 - LTR5 LTR ERVK 0 969 488 356 317 12 18 chr12 11042108 11042272 -133240217 + AluSg/x SINE Alu 138 300 0 3033 176 21 5 chr12 11043503 11044316 -133238173 - L1M3a LINE L1 -3322 4243 3422 1830 168 0 3 chr12 11044318 11044631 -133237858 - AluSx SINE Alu 0 312 1 1012 104 0 0 chr12 11044632 11044766 -133237723 - AluSq/x SINE Alu -179 134 1 208 346 109 10 chr12 11044925 11045026 -133237463 - MIR SINE MIR -150 112 2 229 336 69 9 chr12 11045620 11045736 -133236753 - L1M3a LINE L1 -5170 2316 2194 1348 341 9 5 chr12 11045900 11046348 -133236141 - L1M3a LINE L1 -5505 1981 1532 25 0 0 0 chr12 11047909 11047934 -133234555 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr12 11048489 11048526 -133233963 + AT_rich Low_complexity Low_complexity 1 37 0 1597 114 35 38 chr12 11049855 11050144 -133232345 - SVA Other Other -1098 288 1 307 196 124 21 chr12 11050192 11050289 -133232200 + L1MC4a LINE L1 6074 6180 -1628 1466 189 0 50 chr12 11052114 11052415 -133230074 + AluJb SINE Alu 12 297 -15 568 119 0 0 chr12 11053169 11053253 -133229236 - AluY SINE Alu -226 84 1 237 311 154 74 chr12 11053253 11053571 -133228918 - L2 LINE L2 -6 3266 2920 1729 175 3 16 chr12 11053571 11053885 -133228604 + AluJb SINE Alu 1 310 -2 2284 92 0 3 chr12 11053913 11054207 -133228282 + AluSg SINE Alu 1 293 -17 366 218 36 91 chr12 11054213 11054323 -133228166 - MIR SINE MIR -151 111 8 253 308 47 37 chr12 11054695 11054802 -133227687 - MIR3 SINE MIR -19 189 82 271 282 137 26 chr12 11054813 11054930 -133227559 - L2 LINE L2 -22 3250 3121 2130 114 0 10 chr12 11056448 11056746 -133225743 + AluSx SINE Alu 1 295 -17 2084 129 10 3 chr12 11057542 11057837 -133224652 + AluSq SINE Alu 1 297 -16 234 278 22 78 chr12 11058521 11058611 -133223878 - MIR3 SINE MIR -39 169 85 3792 125 15 11 chr12 11059338 11059953 -133222536 - LTR5 LTR ERVK -352 617 1 188 35 35 0 chr12 11060382 11060411 -133222078 + (TAAAAA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr12 11060681 11060707 -133221782 + (T)n Simple_repeat Simple_repeat 1 26 0 419 360 84 45 chr12 11060832 11061140 -133221349 + L2 LINE L2 2953 3272 0 2033 117 3 7 chr12 11061599 11061882 -133220607 - AluSg SINE Alu -18 292 11 29 0 0 0 chr12 11062826 11062855 -133219634 + AT_rich Low_complexity Low_complexity 1 29 0 260 337 54 0 chr12 11063318 11063410 -133219079 + L2 LINE L2 3212 3308 -5 293 132 0 20 chr12 11064643 11064703 -133217786 + L1MC2 LINE L1 5180 5237 -909 4846 165 43 8 chr12 11064810 11065745 -133216744 + L1MC2 LINE L1 5364 6331 -13 2521 188 118 37 chr12 11065762 11066415 -133216074 + L1MD1 LINE L1 5441 6146 -96 665 240 228 4 chr12 11066415 11066597 -133215892 + MSTD LTR MaLR 1 141 -255 321 47 0 0 chr12 11066597 11066640 -133215849 + (TC)n Simple_repeat Simple_repeat 1 43 0 665 240 228 4 chr12 11066640 11066703 -133215786 + MSTD LTR MaLR 141 301 -95 * 666 208 39 97 chr12 11066693 11066972 -133215517 - MLT1C LTR MaLR -196 271 9 314 177 161 0 chr12 11066980 11067042 -133215447 + MER5A DNA MER1_type 93 164 -25 932 43 0 51 chr12 11067050 11067188 -133215301 + L1MA6 LINE L1 6170 6300 0 292 172 172 0 chr12 11067349 11067407 -133215082 + MER5A DNA MER1_type 99 166 -23 983 63 0 42 chr12 11067409 11067552 -133214937 + L1PA10 LINE L1 6023 6159 -9 1108 189 32 73 chr12 11067552 11067904 -133214585 + L1M1 LINE L1 3523 3860 -3705 1305 193 73 0 chr12 11067914 11068189 -133214300 - MER2 DNA MER2_type 0 345 51 232 250 0 0 chr12 11068197 11068249 -133214240 + LTR30 LTR ERV1 1 52 -670 3439 103 138 107 chr12 11068249 11069331 -133213158 + LTR12 LTR ERV1 57 714 0 2320 211 106 11 chr12 11069376 11070007 -133212482 + L1M1 LINE L1 3866 4556 -3009 * 3011 70 3 0 chr12 11070004 11070389 -133212100 + L1PA8 LINE L1 5766 6151 -21 494 209 99 0 chr12 11070399 11070581 -133211908 + L1M1 LINE L1 4536 4735 -2830 2209 170 3 0 chr12 11070755 11071119 -133211370 + MLT1A1 LTR MaLR 1 365 0 328 323 15 8 chr12 11071172 11071305 -133211184 - L2 LINE L2 0 3313 3180 1160 251 28 8 chr12 11071306 11071705 -133210784 + L1ME1 LINE L1 2464 2870 -3276 242 50 0 0 chr12 11071706 11071746 -133210743 - Alu SINE Alu 0 301 262 966 112 7 7 chr12 11071747 11071890 -133210599 - AluSq/x SINE Alu -170 143 1 310 235 12 0 chr12 11071928 11072009 -133210480 + L1ME1 LINE L1 2956 3037 -3109 5351 238 66 40 chr12 11072060 11072198 -133210291 + L1ME1 LINE L1 3211 3344 -2830 1808 196 48 24 chr12 11072198 11072652 -133209837 + MLT1C LTR MaLR 1 465 -2 5351 238 66 40 chr12 11072652 11073004 -133209485 + L1ME1 LINE L1 3344 3685 -2489 2428 67 3 7 chr12 11073004 11073304 -133209185 + AluSp SINE Alu 1 299 -14 5351 238 66 40 chr12 11073304 11074016 -133208473 + L1ME1 LINE L1 3685 4377 -1797 2127 120 0 17 chr12 11074016 11074317 -133208172 + AluSx SINE Alu 1 296 -16 5351 238 66 40 chr12 11074317 11075012 -133207477 + L1ME1 LINE L1 4377 5174 -1000 639 95 0 0 chr12 11075012 11075107 -133207382 - L1PB1 LINE L1 -8 6143 6049 5351 238 66 40 chr12 11075107 11075533 -133206956 + L1ME1 LINE L1 5174 5588 -586 674 191 0 0 chr12 11075555 11075691 -133206798 + FLAM_C SINE Alu 1 136 0 1840 206 83 46 chr12 11075693 11076238 -133206251 + L1ME1 LINE L1 5597 6161 -5 1402 213 137 12 chr12 11076248 11076665 -133205824 + L1MC4 LINE L1 7561 8029 -13 1794 146 7 34 chr12 11077592 11077887 -133204602 + AluJb SINE Alu 1 287 -25 285 29 0 0 chr12 11079516 11079550 -133202939 + (TG)n Simple_repeat Simple_repeat 2 35 0 261 292 10 0 chr12 11080423 11080519 -133201970 + L1ME LINE L1 5802 5898 -223 22 80 0 0 chr12 11080932 11080982 -133201507 + AT_rich Low_complexity Low_complexity 1 50 0 232 219 172 0 chr12 11081207 11081271 -133201218 - MIR SINE MIR -109 153 79 3372 131 73 13 chr12 11081868 11082488 -133200001 + L1MA10 LINE L1 5676 6332 -2 272 297 70 16 chr12 11086481 11086609 -133195880 + MER5A DNA MER1_type 49 183 -6 27 29 0 0 chr12 11087928 11087962 -133194527 + AT_rich Low_complexity Low_complexity 1 34 0 327 317 28 14 chr12 11088117 11088262 -133194227 - L1ME LINE L1 -462 5659 5513 303 234 31 0 chr12 11089003 11089067 -133193422 - MIR SINE MIR -108 154 89 536 298 57 40 chr12 11089178 11089406 -133193083 + MIR SINE MIR 21 252 -10 198 306 181 0 chr12 11089893 11089965 -133192524 + L2 LINE L2 3171 3255 -58 2008 62 19 11 chr12 11090792 11091052 -133191437 + AluY SINE Alu 43 304 -7 22 0 0 0 chr12 11091499 11091521 -133190968 + AT_rich Low_complexity Low_complexity 1 22 0 197 245 41 0 chr12 11091791 11091840 -133190649 - L2 LINE L2 -8 3264 3214 243 163 61 0 chr12 11092592 11092603 -133189886 + MER3 DNA MER1_type 37 50 -159 311 129 129 0 chr12 11092603 11092665 -133189824 - MER3 DNA MER1_type 0 209 140 472 214 45 9 chr12 11092877 11092989 -133189500 - MER3 DNA MER1_type -89 120 5 725 250 91 19 chr12 11094511 11094775 -133187714 - L1ME LINE L1 -343 5778 5496 377 160 217 57 chr12 11094881 11094987 -133187502 - L2 LINE L2 -12 3301 3179 256 347 119 27 chr12 11096068 11096287 -133186202 - MIR SINE MIR -2 260 22 754 114 0 0 chr12 11097993 11098098 -133184391 + AluSg/x SINE Alu 180 284 -26 216 0 0 0 chr12 11098293 11098317 -133184172 + (A)n Simple_repeat Simple_repeat 1 24 0 308 370 74 0 chr12 11098692 11098854 -133183635 - MIR SINE MIR -7 255 82 2313 94 0 3 chr12 11099182 11099491 -133182998 + AluSx SINE Alu 3 310 -2 1286 193 36 0 chr12 11099783 11099906 -133182583 + AluJb SINE Alu 1 118 -184 531 0 0 0 chr12 11099906 11099965 -133182524 + (CATAA)n Simple_repeat Simple_repeat 2 60 0 1286 193 36 0 chr12 11099965 11100115 -133182374 + AluJb SINE Alu 118 284 -18 644 208 0 0 chr12 11099995 11100115 -133182374 + AluSg/x SINE Alu 162 302 0 190 0 0 0 chr12 11100115 11100136 -133182353 + (TAA)n Simple_repeat Simple_repeat 2 180 0 211 322 149 0 chr12 11100524 11100645 -133181844 + L2 LINE L2 2920 3058 -214 324 259 105 37 chr12 11102164 11102326 -133180163 + MIR SINE MIR 34 206 -56 1775 79 0 9 chr12 11102489 11102718 -133179771 + AluSq SINE Alu 85 311 -2 2032 108 58 0 chr12 11102737 11103015 -133179474 + AluSq SINE Alu 1 294 -19 313 358 103 0 chr12 11103097 11103262 -133179227 - L2 LINE L2 -222 3050 2869 507 219 57 0 chr12 11103423 11103528 -133178961 + MER81 DNA DNA 1 111 -3 541 202 40 0 chr12 11104014 11104138 -133178351 + MER3 DNA MER1_type 81 209 0 261 207 35 0 chr12 11104095 11104153 -133178336 - MER3 DNA MER1_type -119 90 31 * 279 307 171 11 chr12 11105713 11105889 -133176600 + L2 LINE L2 2848 3051 -221 371 198 153 9 chr12 11106666 11106777 -133175712 - MIR SINE MIR -11 251 125 29 0 0 0 chr12 11106897 11106926 -133175563 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr12 11107064 11107086 -133175403 + (CA)n Simple_repeat Simple_repeat 1 22 0 258 160 0 0 chr12 11109353 11109403 -133173086 + (TG)n Simple_repeat Simple_repeat 2 51 0 1926 159 3 13 chr12 11111854 11112169 -133170320 + AluJb SINE Alu 1 312 0 306 67 0 0 chr12 11112909 11112954 -133169535 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 2322 62 0 0 chr12 11112958 11113232 -133169257 - AluY SINE Alu -37 274 1 255 352 106 0 chr12 11113474 11113616 -133168873 + MER5B DNA MER1_type 7 163 -15 2361 53 0 3 chr12 11114440 11114750 -133167739 + AluY SINE Alu 1 309 0 299 308 131 58 chr12 11115794 11116190 -133166299 - L2 LINE L2 -17 3296 2872 444 278 138 8 chr12 11116683 11116874 -133165615 - MIR SINE MIR -1 261 38 877 223 5 5 chr12 11116874 11117071 -133165418 - MER3 DNA MER1_type -1 208 12 540 0 0 0 chr12 11117748 11117808 -133164681 + (GA)n Simple_repeat Simple_repeat 1 60 0 2203 123 3 3 chr12 11117819 11118127 -133164362 + AluSx SINE Alu 1 308 -4 1098 173 36 0 chr12 11118285 11118505 -133163984 + L1 LINE L1 3812 4039 -2107 1505 260 240 66 chr12 11119613 11119786 -133162703 - L2 LINE L2 0 3313 3171 583 176 0 101 chr12 11119786 11119934 -133162555 + FLAM_A SINE Alu 1 133 0 1505 260 240 66 chr12 11119934 11121081 -133161408 - L2 LINE L2 -142 3171 1759 233 270 191 0 chr12 11121162 11121277 -133161212 - L3b LINE CR1 -205 1378 1242 675 236 6 32 chr12 11122844 11123001 -133159488 - FRAM SINE Alu -24 152 1 2481 62 0 13 chr12 11125052 11125356 -133157133 - AluY SINE Alu -11 300 1 206 95 24 0 chr12 11126847 11126889 -133155600 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 247 317 24 0 chr12 11127005 11127087 -133155402 - L2 LINE L2 -8 3264 3181 2154 106 3 7 chr12 11127133 11127425 -133155064 - AluSx SINE Alu -17 295 5 388 314 95 14 chr12 11129996 11130206 -133152283 + MIR SINE MIR 29 255 -7 25 31 0 0 chr12 11131275 11131307 -133151182 + AT_rich Low_complexity Low_complexity 1 32 0 390 351 96 16 chr12 11131359 11131692 -133150797 - L2 LINE L2 -214 3058 2695 1633 225 67 43 chr12 11131702 11132240 -133150249 + L1MD2 LINE L1 5795 6345 -14 663 277 100 73 chr12 11132459 11133090 -133149399 - L2 LINE L2 -939 2375 1728 371 248 5 151 chr12 11133375 11133458 -133149031 - MER5B DNA MER1_type -1 177 84 2249 118 48 25 chr12 11133458 11133814 -133148675 + THE1B LTR MaLR 1 364 0 11581 102 6 0 chr12 11133814 11135384 -133147105 + THE1B-int LTR MaLR 1 1580 0 2190 107 62 37 chr12 11135384 11135739 -133146750 + THE1B LTR MaLR 1 364 0 371 248 5 151 chr12 11135739 11135859 -133146630 - MER5B DNA MER1_type -91 87 2 234 0 0 0 chr12 11136326 11136352 -133146137 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 513 179 0 0 chr12 11136357 11136441 -133146048 - AluJ SINE Alu -24 288 205 804 201 0 7 chr12 11136442 11136581 -133145908 - AluJ SINE Alu -173 139 2 21 36 0 0 chr12 11136823 11136851 -133145638 + AT_rich Low_complexity Low_complexity 1 28 0 449 194 16 91 chr12 11136851 11137037 -133145452 + L1MC5 LINE L1 7760 7931 -30 2367 57 6 31 chr12 11137546 11137864 -133144625 + AluY SINE Alu 1 310 -1 220 337 0 12 chr12 11138032 11138118 -133144371 + MIR SINE MIR 103 187 -75 2388 76 0 13 chr12 11138434 11138738 -133143751 + AluSx SINE Alu 1 300 -12 629 247 37 43 chr12 11139069 11139287 -133143202 + MIR SINE MIR 49 262 0 690 226 0 41 chr12 11139712 11139858 -133142631 + MER5B DNA MER1_type 35 174 -4 200 279 0 16 chr12 11139962 11140023 -133142466 + CT-rich Low_complexity Low_complexity 1 60 0 301 280 11 19 chr12 11140028 11140163 -133142326 + MIR SINE MIR 82 212 -50 275 280 53 0 chr12 11140709 11140784 -133141705 + MIR SINE MIR 36 114 -94 2044 78 85 14 chr12 11140784 11141067 -133141422 - AluY SINE Alu -8 303 1 3888 136 21 2 chr12 11141552 11142175 -133140314 + MER41B LTR ERV1 1 635 0 3147 124 18 12 chr12 11142175 11142746 -133139743 + MER41B-int LTR ERV1 1 633 -5313 * 29469 102 38 19 chr12 11142738 11143690 -133138799 + MER41B-int LTR ERV1 1083 2016 -3930 2141 133 22 35 chr12 11143690 11144059 -133138430 + THE1B LTR MaLR 1 364 0 2474 87 3 0 chr12 11144060 11144370 -133138119 + AluY SINE Alu 1 311 0 29469 102 38 19 chr12 11144370 11148190 -133134299 + MER41B-int LTR ERV1 2015 5946 0 3718 141 41 3 chr12 11148190 11148802 -133133687 + MER41B LTR ERV1 1 635 0 678 237 217 10 chr12 11149291 11149489 -133133000 - MIR SINE MIR -1 261 23 4298 195 40 11 chr12 11149572 11150789 -133131700 - L1MB7 LINE L1 -19 6165 4901 880 186 7 0 chr12 11150848 11150993 -133131496 - FRAM SINE Alu -30 146 1 1221 176 14 92 chr12 11150993 11151049 -133131440 - L1MB7 LINE L1 -1373 4773 4714 2349 54 44 0 chr12 11151049 11151344 -133131145 + AluY SINE Alu 4 311 0 1221 176 14 92 chr12 11151344 11151644 -133130845 - L1MB7 LINE L1 -1432 4714 4445 2066 141 24 29 chr12 11154272 11154649 -133127840 + THE1C LTR MaLR 1 375 0 1628 173 0 49 chr12 11155059 11155365 -133127124 + AluJb SINE Alu 12 302 -10 180 0 0 0 chr12 11156056 11156076 -133126413 + (CTG)n Simple_repeat Simple_repeat 1 20 0 2139 105 0 63 chr12 11156076 11156410 -133126079 - AluSq SINE Alu 0 313 1 405 237 149 18 chr12 11156747 11156861 -133125628 + L2 LINE L2 3185 3313 0 3796 152 39 95 chr12 11157175 11158589 -133123900 + L1MA9 LINE L1 4969 6299 -13 1590 204 72 58 chr12 11158645 11158711 -133123778 + MLT1D LTR MaLR 5 69 -436 2410 53 17 3 chr12 11158711 11159010 -133123479 - AluY SINE Alu -8 303 1 1590 204 72 58 chr12 11159010 11159429 -133123060 + MLT1D LTR MaLR 69 497 -8 1229 215 52 12 chr12 11159619 11159942 -133122547 + MLT1B LTR MaLR 7 342 -48 750 176 139 0 chr12 11159942 11160107 -133122382 + MER1B DNA MER1_type 1 148 -149 724 151 8 8 chr12 11160123 11160249 -133122240 - AluSq/x SINE Alu -182 130 5 1154 110 0 37 chr12 11160253 11160444 -133122045 + MER1B DNA MER1_type 136 319 -20 335 135 0 0 chr12 11160453 11160505 -133121984 + MLT1B LTR MaLR 416 467 0 1452 77 0 25 chr12 11160896 11161092 -133121397 + AluSg/x SINE Alu 90 280 -30 276 267 53 0 chr12 11161190 11161265 -133121224 - MIR SINE MIR -67 195 117 2282 101 13 0 chr12 11162188 11162496 -133119993 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 11162586 11162607 -133119882 + GC_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr12 11162607 11162637 -133119852 + (CA)n Simple_repeat Simple_repeat 1 30 0 395 149 23 11 chr12 11162989 11163076 -133119413 + L1MB3 LINE L1 6087 6174 -9 1127 206 56 103 chr12 11164806 11165271 -133117218 - MLT1D LTR MaLR 0 505 63 1970 120 39 34 chr12 11165273 11165821 -133116668 - MER51A LTR ERV1 0 634 1 429 108 15 0 chr12 11165821 11165884 -133116605 - MLT1D LTR MaLR -441 64 1 297 0 0 0 chr12 11165973 11166006 -133116483 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 464 263 44 0 chr12 11166252 11166366 -133116123 + MIR3 SINE MIR 83 201 -7 285 311 98 16 chr12 11166433 11166555 -133115934 - L3 LINE CR1 -85 1492 1361 229 308 98 14 chr12 11166548 11166691 -133115798 + MIR SINE MIR 102 256 -6 * 273 327 75 69 chr12 11166762 11167080 -133115409 - L3 LINE CR1 -749 828 509 307 329 121 54 chr12 11167590 11167870 -133114619 + L2 LINE L2 2932 3230 -42 917 288 113 39 chr12 11168408 11168842 -133113647 + L2 LINE L2 2848 3313 0 191 36 36 0 chr12 11169133 11169161 -133113328 + (TA)n Simple_repeat Simple_repeat 1 29 0 343 118 16 91 chr12 11169183 11169369 -133113120 + (TA)n Simple_repeat Simple_repeat 1 172 0 * 347 159 62 45 chr12 11169250 11169426 -133113063 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 412 278 208 32 chr12 11169789 11170160 -133112329 + MLT1J2 LTR MaLR 1 436 -14 390 253 0 10 chr12 11170373 11170472 -133112017 + Charlie7 DNA MER1_type 124 221 -2391 486 264 179 8 chr12 11170571 11170924 -133111565 + Charlie7 DNA MER1_type 1436 1848 -764 1275 72 0 0 chr12 11170924 11171133 -133111356 - AluSc SINE Alu 0 336 128 434 232 118 16 chr12 11171194 11171440 -133111049 + Charlie7 DNA MER1_type 1853 2123 -489 201 175 0 0 chr12 11171445 11171485 -133111004 + (TA)n Simple_repeat Simple_repeat 1 40 0 225 224 0 0 chr12 11171542 11171600 -133110889 - L1MC4 LINE L1 -1345 6697 6640 317 297 11 0 chr12 11171659 11171750 -133110739 - L1MC4 LINE L1 -1339 6703 6612 428 229 28 14 chr12 11171790 11171934 -133110555 + Charlie7 DNA MER1_type 2204 2349 -263 23 0 0 0 chr12 11172083 11172106 -133110383 + AT_rich Low_complexity Low_complexity 1 23 0 1753 173 104 33 chr12 11172171 11172594 -133109895 - MLT2B1 LTR ERVL -67 453 1 3601 153 36 12 chr12 11172594 11172823 -133109666 - ERVL-B1 LTR ERVL -7 5757 5535 2009 171 6 0 chr12 11172823 11173162 -133109327 - MER2 DNA MER2_type -3 341 1 3601 153 36 12 chr12 11173162 11173623 -133108866 - ERVL-B1 LTR ERVL -229 5535 5050 * 7344 149 66 2 chr12 11173621 11174924 -133107565 - ERVL-B1 LTR ERVL -1699 4065 2680 1245 150 98 33 chr12 11174929 11175202 -133107287 + THE1C LTR MaLR 1 291 -84 2474 106 45 46 chr12 11175202 11175657 -133106832 + THE1C LTR MaLR 1 428 0 966 163 17 6 chr12 11175659 11175837 -133106652 + THE1C-int LTR MaLR 3 182 -1398 413 135 40 0 chr12 11175837 11175911 -133106578 + THE1C LTR MaLR 352 428 0 13345 191 31 7 chr12 11175913 11178526 -133103963 - ERVL-B1 LTR ERVL -3087 2677 2 364 91 0 0 chr12 11178529 11178584 -133103905 - ERVL-B1 LTR ERVL -2 518 464 283 149 0 53 chr12 11178584 11178678 -133103811 + (TA)n Simple_repeat Simple_repeat 1 89 0 1711 168 129 30 chr12 11178683 11179118 -133103371 - MLT2B1 LTR ERVL -40 480 3 184 301 58 39 chr12 11179835 11179938 -133102551 + L2 LINE L2 2202 2306 -1008 6825 217 93 33 chr12 11180382 11181816 -133100673 + L1ME LINE L1 2661 4009 -2233 2428 71 0 3 chr12 11181816 11182127 -133100362 + AluY SINE Alu 1 310 -1 6825 217 93 33 chr12 11182127 11183067 -133099422 + L1ME LINE L1 4009 4892 -1350 2017 136 10 3 chr12 11183067 11183369 -133099120 + AluSc SINE Alu 1 304 -5 6825 217 93 33 chr12 11183369 11183721 -133098768 + L1ME LINE L1 4892 5222 -1020 1794 156 38 41 chr12 11183721 11184112 -133098377 - MLT1B LTR MaLR 0 390 1 6825 217 93 33 chr12 11184112 11184147 -133098342 + L1ME LINE L1 5222 5596 -646 360 0 0 0 chr12 11184152 11184192 -133098297 + (CA)n Simple_repeat Simple_repeat 2 41 0 229 275 62 0 chr12 11185365 11185445 -133097044 + L1ME LINE L1 5740 5824 -297 348 77 0 0 chr12 11185737 11185789 -133096700 + (CA)n Simple_repeat Simple_repeat 1 52 0 464 250 194 52 chr12 11186005 11186293 -133096196 + L2 LINE L2 2947 3275 -38 23 0 0 0 chr12 11186923 11186946 -133095543 + AT_rich Low_complexity Low_complexity 1 23 0 381 279 111 41 chr12 11188291 11188535 -133093954 - MIR SINE MIR 0 262 2 204 93 37 19 chr12 11189245 11189299 -133093190 + A-rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr12 11189915 11189941 -133092548 + AT_rich Low_complexity Low_complexity 1 26 0 2142 111 17 7 chr12 11189954 11190251 -133092238 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr12 11190566 11190589 -133091900 + AT_rich Low_complexity Low_complexity 1 23 0 232 235 0 0 chr12 11190654 11190705 -133091784 - MER116 DNA Mariner -3 77 27 302 125 0 0 chr12 11191265 11191313 -133091176 - Alu SINE Alu -12 290 243 195 364 57 0 chr12 11191313 11191401 -133091088 - MIR SINE MIR -168 94 2 470 278 100 48 chr12 11192319 11192549 -133089940 + L2 LINE L2 1323 1564 -1750 1380 254 106 11 chr12 11192691 11192807 -133089682 - L1MC4 LINE L1 -295 7747 7643 2277 85 0 10 chr12 11192807 11193101 -133089388 - AluSc SINE Alu -11 298 8 1380 254 106 11 chr12 11193101 11193448 -133089041 - L1MC4 LINE L1 -399 7643 7240 1653 201 98 8 chr12 11193454 11193832 -133088657 - L1MC4 LINE L1 -956 7086 6675 871 253 125 142 chr12 11193990 11194451 -133088038 + L2 LINE L2 1701 2169 -1145 2366 81 0 0 chr12 11194451 11194765 -133087724 + AluY SINE Alu 1 314 0 871 253 125 142 chr12 11194765 11195561 -133086928 + L2 LINE L2 2169 2937 -377 381 261 193 43 chr12 11197126 11197333 -133085156 - MIR SINE MIR -6 256 19 201 121 0 0 chr12 11197544 11197577 -133084912 + (GGA)n Simple_repeat Simple_repeat 1 33 0 1307 187 53 28 chr12 11198297 11198731 -133083758 + Charlie1b DNA MER1_type 35 523 0 819 89 0 0 chr12 11200639 11200751 -133081738 + L1PB1 LINE L1 6033 6144 -7 2058 111 34 7 chr12 11202467 11202765 -133079724 - AluSx SINE Alu -6 306 1 27 0 0 0 chr12 11202841 11202868 -133079621 + AT_rich Low_complexity Low_complexity 1 27 0 2190 112 10 3 chr12 11202978 11203273 -133079216 + AluSq SINE Alu 1 297 -16 246 289 39 67 chr12 11203945 11204049 -133078440 - MIR3 SINE MIR -23 185 85 474 304 51 0 chr12 11206400 11206558 -133075931 + MIR3 SINE MIR 30 195 -13 302 256 109 119 chr12 11210591 11210785 -133071704 - L1M2 LINE L1 -5774 1075 881 207 0 0 0 chr12 11210785 11210808 -133071681 + (TGG)n Simple_repeat Simple_repeat 2 24 0 302 256 109 119 chr12 11210808 11211008 -133071481 - L1M2 LINE L1 -5968 881 685 231 366 20 10 chr12 11211937 11212038 -133070451 + MIR SINE MIR 28 129 -133 267 333 0 0 chr12 11212247 11212322 -133070167 + L2 LINE L2 3193 3267 -5 194 304 22 54 chr12 11213108 11213200 -133069289 - L2 LINE L2 0 3272 3184 679 199 24 54 chr12 11213553 11213719 -133068770 - MER69A DNA AcHobo 0 177 17 262 286 0 61 chr12 11213835 11213933 -133068556 - MLT2E LTR ERVL -496 132 41 891 188 87 42 chr12 11214420 11214708 -133067781 - MER33 DNA MER1_type -22 302 2 443 304 70 19 chr12 11215405 11215563 -133066926 - MIR3 SINE MIR -20 188 23 1654 117 0 107 chr12 11215634 11215932 -133066557 + AluJb SINE Alu 32 297 -15 351 0 0 0 chr12 11216680 11216719 -133065770 + (TA)n Simple_repeat Simple_repeat 1 39 0 1613 189 34 20 chr12 11217040 11217390 -133065099 - MLT1A1 LTR MaLR -8 357 3 26 82 0 0 chr12 11217479 11217540 -133064949 + AT_rich Low_complexity Low_complexity 1 61 0 32 0 0 0 chr12 11217923 11217955 -133064534 + AT_rich Low_complexity Low_complexity 1 32 0 943 147 223 83 chr12 11218973 11219238 -133063251 - AluJb SINE Alu 0 302 1 536 294 52 26 chr12 11219385 11219579 -133062910 - MIR SINE MIR -62 200 2 537 268 74 5 chr12 11220654 11220844 -133061645 + LTR33 LTR ERVL 12 214 -307 383 230 110 55 chr12 11220902 11221102 -133061387 + LTR33 LTR ERVL 311 521 0 425 155 14 0 chr12 11221275 11221346 -133061143 - MER81 DNA DNA -42 72 1 358 175 16 0 chr12 11222535 11222598 -133059891 - MER81 DNA DNA -42 72 9 638 285 79 19 chr12 11222608 11222725 -133059764 + MIR SINE MIR 32 140 -122 1575 184 7 31 chr12 11222725 11223019 -133059470 + AluJo SINE Alu 2 288 -24 638 285 79 19 chr12 11223019 11223115 -133059374 + MIR SINE MIR 140 258 -4 21 0 0 0 chr12 11224090 11224111 -133058378 + AT_rich Low_complexity Low_complexity 1 21 0 2434 74 3 0 chr12 11224619 11224916 -133057573 + AluSg SINE Alu 1 298 -12 2194 253 51 45 chr12 11225004 11226044 -133056445 + L1MC4 LINE L1 6997 8042 0 21 57 0 0 chr12 11226158 11226193 -133056296 + AT_rich Low_complexity Low_complexity 1 35 0 1750 214 0 0 chr12 11226699 11227008 -133055481 - AluJb SINE Alu -3 309 1 1046 183 24 56 chr12 11227145 11227396 -133055093 + MLT1A2 LTR MaLR 1 243 -131 704 230 24 12 chr12 11227493 11227658 -133054831 + MLT1A2 LTR MaLR 208 374 0 1504 186 15 22 chr12 11228063 11228337 -133054152 - AluJo SINE Alu -12 300 29 390 333 0 0 chr12 11228597 11228741 -133053748 + MER117 DNA MER1_type 9 152 -45 208 353 86 11 chr12 11230042 11230229 -133052260 - MIR SINE MIR -31 231 31 728 244 10 70 chr12 11230579 11230780 -133051709 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr12 11230970 11230991 -133051498 + AT_rich Low_complexity Low_complexity 1 21 0 24538 78 211 5 chr12 11231008 11236078 -133046411 - L1PA6 LINE L1 -5 6149 15 833 209 7 0 chr12 11236078 11236226 -133046263 - AluJb SINE Alu -27 285 137 1371 194 0 27 chr12 11236306 11236569 -133045920 - AluJo SINE Alu -36 276 21 21 36 0 0 chr12 11236586 11236614 -133045875 + AT_rich Low_complexity Low_complexity 1 28 0 426 308 50 18 chr12 11237605 11237786 -133044703 + MIR SINE MIR 1 185 -59 255 305 143 9 chr12 11238217 11238322 -133044167 - MIR SINE MIR -59 149 31 322 320 45 34 chr12 11239533 11239711 -133042778 - L1MEd LINE L1 -5899 220 41 270 275 62 28 chr12 11239751 11239929 -133042560 - L1M4 LINE L1 -1497 4649 4466 238 362 64 0 chr12 11240560 11240654 -133041835 - L2 LINE L2 -39 3233 3134 204 167 0 0 chr12 11240975 11241023 -133041466 + (TG)n Simple_repeat Simple_repeat 1 48 0 436 319 29 7 chr12 11241746 11241884 -133040605 + MIR SINE MIR 2 142 -120 785 168 22 0 chr12 11241970 11242107 -133040382 + AluSq SINE Alu 15 154 -159 460 151 47 0 chr12 11242101 11242187 -133040302 - AluJ/FLAM SINE Alu -222 90 1 * 1771 158 82 15 chr12 11242202 11242543 -133039946 - THE1B LTR MaLR 0 364 1 11340 104 6 6 chr12 11242547 11244123 -133038366 - THE1B-int LTR MaLR -4 1576 1 2104 124 67 14 chr12 11244123 11244469 -133038020 - THE1B LTR MaLR 0 364 1 352 302 113 13 chr12 11244477 11244636 -133037853 - MIR SINE MIR -42 220 46 879 118 28 42 chr12 11244658 11244802 -133037687 + AluSg/x SINE Alu 160 301 -11 264 299 69 11 chr12 11245080 11245167 -133037322 - L2 LINE L2 -64 3208 3117 277 303 0 64 chr12 11245743 11245852 -133036637 - L2 LINE L2 -16 3297 3196 2327 181 94 5 chr12 11248207 11248778 -133033711 - L1M4 LINE L1 -1120 5262 4662 2619 252 15 21 chr12 11248799 11249899 -133032590 - L1M4c LINE L1 -3248 3858 2764 21 0 0 0 chr12 11250138 11250159 -133032330 + AT_rich Low_complexity Low_complexity 1 21 0 1124 187 41 4 chr12 11250161 11250407 -133032082 - L1MC2 LINE L1 -11 6333 6079 22 0 0 0 chr12 11250537 11250559 -133031930 + AT_rich Low_complexity Low_complexity 1 22 0 1793 251 130 17 chr12 11250608 11251482 -133031007 - L1M4c LINE L1 -4519 2518 1761 1649 162 49 35 chr12 11251482 11251766 -133030723 - AluJo SINE Alu -24 288 1 1793 251 130 17 chr12 11251766 11252439 -133030050 - L1M4c LINE L1 -5276 1761 1165 366 284 17 0 chr12 11252526 11252642 -133029847 - L1ME3 LINE L1 -2 6160 6043 556 197 44 9 chr12 11252924 11253141 -133029348 - L1ME LINE L1 -720 5444 5219 185 333 27 54 chr12 11254616 11254727 -133027762 + MIR3 SINE MIR 91 198 -10 559 296 82 26 chr12 11255906 11256139 -133026350 - MIR SINE MIR -1 261 16 23 54 0 0 chr12 11258703 11258740 -133023749 + AT_rich Low_complexity Low_complexity 1 37 0 725 266 220 8 chr12 11260160 11260524 -133021965 - LTR16A1 LTR ERVL 0 457 17 2604 202 26 10 chr12 11260674 11261257 -133021232 + L1MD3 LINE L1 7399 7990 -5 330 231 74 41 chr12 11261823 11261944 -133020545 - MLT1J LTR MaLR -10 501 377 290 119 0 0 chr12 11262102 11262144 -133020345 - MLT1L LTR MaLR -536 79 38 1404 186 4 8 chr12 11262754 11263012 -133019477 - AluJo SINE Alu -13 299 43 249 279 204 35 chr12 11263433 11263605 -133018884 + L2 LINE L2 3113 3313 0 258 193 34 42 chr12 11263840 11263959 -133018530 + (TA)n Simple_repeat Simple_repeat 2 119 0 240 273 156 0 chr12 11264713 11264790 -133017699 - L2 LINE L2 0 3272 3184 6975 30 22 1 chr12 11265400 11266248 -133016241 + L1PA4 LINE L1 5286 6151 -4 469 326 64 11 chr12 11266478 11266665 -133015824 - MER110 LTR ERV1 -93 398 202 1558 144 3 87 chr12 11266683 11266995 -133015494 - AluJo SINE Alu -26 286 1 180 0 0 0 chr12 11268348 11268368 -133014121 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 4094 72 18 23 chr12 11268684 11269055 -133013434 - L1PA6 LINE L1 -4 6150 5782 2649 23 0 0 chr12 11269055 11269363 -133013126 - AluYa5 SINE Alu -3 308 1 4094 72 18 23 chr12 11269363 11269560 -133012929 - L1PA6 LINE L1 -372 5782 5585 24 32 0 0 chr12 11269686 11269717 -133012772 + AT_rich Low_complexity Low_complexity 1 31 0 616 191 64 127 chr12 11269882 11270102 -133012387 + MER96B DNA MER1_type? 211 416 -1 5300 156 48 12 chr12 11270223 11270698 -133011791 - L1MA9 LINE L1 0 6312 5855 384 22 0 0 chr12 11270698 11270743 -133011746 + (TG)n Simple_repeat Simple_repeat 2 46 0 5300 156 48 12 chr12 11270743 11271475 -133011014 - L1MA9 LINE L1 -457 5855 5036 2230 125 0 0 chr12 11271475 11271780 -133010709 - AluSg SINE Alu -5 305 1 5300 156 48 12 chr12 11271780 11272087 -133010402 - L1MA9 LINE L1 -1276 5036 4741 338 244 44 59 chr12 11272100 11272235 -133010254 + MIR SINE MIR 112 244 -18 237 123 386 0 chr12 11272796 11272853 -133009636 - MADE1 DNA Mariner 0 80 2 676 311 55 26 chr12 11273009 11273389 -133009100 - L1MC4a LINE L1 -1928 5880 5490 1284 273 80 42 chr12 11273452 11274050 -133008439 - L1ME3A LINE L1 -11 6159 5539 1295 260 133 26 chr12 11274303 11275023 -133007466 + L1 LINE L1 2137 2979 -3167 1341 144 21 49 chr12 11275023 11275266 -133007223 - MER46A DNA MER2_type 0 236 1 1295 260 133 26 chr12 11275266 11275472 -133007017 + L1 LINE L1 2979 3162 -2984 1693 140 3 46 chr12 11275550 11275835 -133006654 + AluJo SINE Alu 3 275 -37 333 47 0 0 chr12 11275838 11275881 -133006608 + (TC)n Simple_repeat Simple_repeat 2 44 0 324 81 32 16 chr12 11275881 11275943 -133006546 + (TA)n Simple_repeat Simple_repeat 2 64 0 294 248 133 0 chr12 11276025 11276130 -133006359 + L1 LINE L1 3689 3807 -2339 * 1041 246 47 28 chr12 11276116 11276651 -133005838 + L1MEc LINE L1 2083 2590 -3625 596 209 99 22 chr12 11276674 11276833 -133005656 + MLT1A1 LTR MaLR 1 139 -226 412 149 0 0 chr12 11276950 11277024 -133005465 + AluS SINE Alu 232 305 -4 2225 68 7 0 chr12 11277257 11277604 -133004885 - AluY SINE Alu 0 349 1 23 33 0 0 chr12 11278111 11278141 -133004348 + AT_rich Low_complexity Low_complexity 1 30 0 1406 22 11 11 chr12 11278888 11279107 -133003382 + L1PA2 LINE L1 5971 6189 0 187 245 57 0 chr12 11279539 11279592 -133002897 + L2 LINE L2 2323 2378 -936 1150 173 0 28 chr12 11279598 11279812 -133002677 + AluJo SINE Alu 28 235 -77 215 226 0 21 chr12 11279941 11280034 -133002455 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 5752 151 27 6 chr12 11280125 11281222 -133001267 - L1MA5 LINE L1 -2 6298 5182 22 70 0 0 chr12 11281320 11281363 -133001126 + AT_rich Low_complexity Low_complexity 1 43 0 580 328 59 11 chr12 11282512 11282799 -132999690 - LTR16B LTR ERVL -51 413 113 2550 154 20 18 chr12 11282843 11283297 -132999192 - MER67C LTR ERV1 0 710 256 1985 280 15 36 chr12 11283538 11284069 -132998420 + MLT1G LTR MaLR 1 542 -48 1141 118 70 0 chr12 11284069 11284256 -132998233 + L1PA11 LINE L1 5972 6171 -3 189 0 0 0 chr12 11284261 11284282 -132998207 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1985 280 15 36 chr12 11284282 11284347 -132998142 + MLT1G LTR MaLR 546 590 0 1987 173 23 45 chr12 11284396 11284881 -132997608 + L1MB8 LINE L1 5695 6168 -10 252 246 0 0 chr12 11285312 11285369 -132997120 - L1M4 LINE L1 -1198 4948 4892 918 10 0 0 chr12 11285447 11285550 -132996939 - L1PA5 LINE L1 -8 6146 6044 201 74 0 0 chr12 11285842 11285869 -132996620 + (T)n Simple_repeat Simple_repeat 1 27 0 578 248 89 9 chr12 11286030 11286244 -132996245 + L1MDa LINE L1 1903 2133 -4407 194 247 56 45 chr12 11286310 11286399 -132996090 - L2 LINE L2 -1103 2211 2122 2243 150 58 27 chr12 11286473 11286513 -132995976 - MSTB LTR MaLR 0 426 389 2267 91 0 3 chr12 11286513 11286820 -132995669 + AluSc SINE Alu 1 306 -3 2243 150 58 27 chr12 11286820 11287068 -132995421 - MSTB LTR MaLR -37 389 119 1219 146 75 0 chr12 11287068 11287281 -132995208 + MER30 DNA MER1_type 1 229 -1 2243 150 58 27 chr12 11287281 11287404 -132995085 - MSTB LTR MaLR -307 119 1 22 99 0 0 chr12 11287513 11287584 -132994905 + AT_rich Low_complexity Low_complexity 1 71 0 4975 245 107 36 chr12 11287664 11288572 -132993917 - L1MDa LINE L1 -3982 2558 1716 1198 209 25 84 chr12 11288572 11288964 -132993525 + MLT1A2 LTR MaLR 4 372 -2 4975 245 107 36 chr12 11288964 11290048 -132992441 - L1MDa LINE L1 -4824 1716 328 1732 230 14 0 chr12 11290033 11290381 -132992108 + L1M2 LINE L1 1233 1585 -5264 * 1019 175 6 0 chr12 11290387 11290553 -132991936 + MSTA LTR MaLR 5 171 -257 475 344 0 5 chr12 11292621 11292833 -132989656 - L1MC4a LINE L1 -1891 5917 5707 2502 200 39 15 chr12 11292862 11293397 -132989092 - MER74A LTR ERVL 0 558 11 28 29 0 0 chr12 11293534 11293569 -132988920 + AT_rich Low_complexity Low_complexity 1 35 0 402 264 0 0 chr12 11294247 11294368 -132988121 - L1MA4 LINE L1 -4 6296 6176 1751 152 47 3 chr12 11295185 11295481 -132987008 - Tigger3b DNA MER2_type 0 1231 923 2081 122 54 20 chr12 11295481 11295833 -132986656 - THE1C LTR MaLR 0 375 12 5109 134 23 58 chr12 11295863 11296818 -132985671 - Tigger3b DNA MER2_type -307 924 3 595 287 97 36 chr12 11297069 11297316 -132985173 - MIR SINE MIR 0 262 1 271 340 46 31 chr12 11297598 11297792 -132984697 + L2 LINE L2 2093 2289 -1025 184 346 70 77 chr12 11298252 11298524 -132983965 + L2 LINE L2 2808 3077 -195 727 184 22 7 chr12 11298562 11298698 -132983791 - MLT1A1 LTR MaLR -223 142 5 293 176 0 135 chr12 11298683 11298793 -132983696 + AluJ/FRAM SINE Alu 219 318 0 * 303 296 23 89 chr12 11299080 11299262 -132983227 - MLT1J LTR MaLR -88 527 247 63 57 0 0 chr12 11300184 11300289 -132982200 + AT_rich Low_complexity Low_complexity 1 105 0 311 352 117 5 chr12 11300297 11300493 -132981996 - L3 LINE CR1 -219 1358 1141 1733 167 7 0 chr12 11302092 11302374 -132980115 - AluJb SINE Alu -28 284 1 383 301 60 20 chr12 11303387 11303586 -132978903 - L1M4 LINE L1 -3403 2743 2537 204 135 0 0 chr12 11304307 11304344 -132978145 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 475 154 44 11 chr12 11305848 11305939 -132976550 + MER53 DNA DNA 1 94 -95 607 169 140 0 chr12 11306394 11306530 -132975959 + L1MA10 LINE L1 6178 6332 -2 1947 123 31 0 chr12 11306960 11307253 -132975236 - AluSp SINE Alu -11 302 1 23 0 0 0 chr12 11308064 11308087 -132974402 + AT_rich Low_complexity Low_complexity 1 23 0 829 127 8 0 chr12 11310808 11310926 -132971563 + AluSg/x SINE Alu 168 286 -26 25 0 0 0 chr12 11310926 11310951 -132971538 + AT_rich Low_complexity Low_complexity 1 25 0 526 303 29 62 chr12 11313439 11313713 -132968776 + ERVL LTR ERVL 1172 1436 -4328 276 336 82 0 chr12 11315494 11315616 -132966873 + L2 LINE L2 216 347 -2967 448 252 92 25 chr12 11315627 11316039 -132966450 - Charlie4a DNA MER1_type -2 506 47 363 235 9 160 chr12 11316093 11316208 -132966281 + L2 LINE L2 406 476 -2838 781 196 0 0 chr12 11316208 11316341 -132966148 - FLAM_C SINE Alu 0 133 1 363 235 9 160 chr12 11316341 11316438 -132966051 + L2 LINE L2 476 586 -2728 247 89 0 22 chr12 11316624 11316669 -132965820 - L1MA4 LINE L1 -9 6291 6248 453 324 109 17 chr12 11316936 11317174 -132965315 + MIR SINE MIR 3 262 0 1145 237 41 36 chr12 11317310 11317673 -132964816 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr12 11317929 11317951 -132964538 + AT_rich Low_complexity Low_complexity 1 22 0 1367 252 42 19 chr12 11318200 11318625 -132963864 + L1 LINE L1 4290 4724 -1422 627 51 0 0 chr12 11318639 11318718 -132963771 + (TA)n Simple_repeat Simple_repeat 1 79 0 267 241 0 17 chr12 11319203 11319261 -132963228 + MLT1K LTR MaLR 186 242 -346 462 267 37 15 chr12 11319262 11319397 -132963092 + L2 LINE L2 3176 3313 0 4237 206 35 28 chr12 11320028 11320213 -132962276 + L1MB4 LINE L1 4565 4747 -1433 266 114 0 0 chr12 11320213 11320248 -132962241 + U2 snRNA snRNA 1 35 -153 4237 206 35 28 chr12 11320248 11321649 -132960840 + L1MB4 LINE L1 4747 6178 -2 645 128 32 24 chr12 11322047 11322202 -132960287 + L1MA4A LINE L1 6164 6319 0 263 312 141 13 chr12 11322522 11322820 -132959669 + L1M4 LINE L1 2708 3043 -3103 1596 141 20 37 chr12 11322870 11323169 -132959320 + L1PA16 LINE L1 5864 6157 -9 25 51 0 0 chr12 11323169 11323208 -132959281 + AT_rich Low_complexity Low_complexity 1 39 0 643 160 9 0 chr12 11323510 11323616 -132958873 - LTR47A LTR ERVL 0 452 346 1866 142 9 9 chr12 11323631 11323954 -132958535 - L1PB3 LINE L1 -2 6152 5830 326 119 48 0 chr12 11323962 11324046 -132958443 + (TA)n Simple_repeat Simple_repeat 1 88 0 409 138 161 11 chr12 11324066 11324153 -132958336 - LTR47A LTR ERVL -92 360 261 2536 128 70 26 chr12 11324407 11324907 -132957582 - L1MA5A LINE L1 -17 6280 5759 525 288 75 87 chr12 11324908 11325481 -132957008 + L1ME LINE L1 237 802 -5317 318 299 78 13 chr12 11326093 11326247 -132956242 + L1ME LINE L1 5247 5410 -2381 243 349 116 46 chr12 11326452 11326779 -132955710 + L2 LINE L2 2875 3224 -48 303 288 27 14 chr12 11326842 11326988 -132955501 + L1ME LINE L1 5693 5840 -264 219 188 0 0 chr12 11327359 11327407 -132955082 + (TG)n Simple_repeat Simple_repeat 1 48 0 24 0 0 0 chr12 11329672 11329696 -132952793 + AT_rich Low_complexity Low_complexity 1 24 0 375 365 13 19 chr12 11329867 11330023 -132952466 - L2 LINE L2 0 3313 3159 285 271 75 53 chr12 11330064 11330197 -132952292 - MIR SINE MIR -8 254 119 1289 260 133 26 chr12 11330524 11331244 -132951245 + L1MEd LINE L1 2120 2962 -3167 1367 140 21 49 chr12 11331244 11331487 -132951002 - MER46A DNA MER2_type 0 236 1 1289 260 133 26 chr12 11331487 11331693 -132950796 + L1MEd LINE L1 2962 3145 -2984 1693 140 3 46 chr12 11331771 11332056 -132950433 + AluJo SINE Alu 3 275 -37 315 49 0 0 chr12 11332059 11332100 -132950389 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 405 70 28 14 chr12 11332099 11332170 -132950319 + (TA)n Simple_repeat Simple_repeat 1 72 0 310 238 133 0 chr12 11332252 11332357 -132950132 + L1MEd LINE L1 3672 3790 -2339 1041 246 39 26 chr12 11332371 11332877 -132949612 + L1MEc LINE L1 2115 2590 -3625 596 209 99 22 chr12 11332900 11333059 -132949430 + MLT1A1 LTR MaLR 1 139 -226 412 149 0 0 chr12 11333176 11333250 -132949239 + AluS SINE Alu 232 305 -4 2225 68 7 0 chr12 11333483 11333834 -132948655 - AluY SINE Alu 0 353 1 23 33 0 0 chr12 11334344 11334374 -132948115 + AT_rich Low_complexity Low_complexity 1 30 0 1473 17 6 11 chr12 11335121 11335341 -132947148 + L1PA2 LINE L1 5971 6189 0 187 245 57 0 chr12 11335773 11335826 -132946663 + L2 LINE L2 2323 2378 -936 1150 173 0 28 chr12 11335832 11336046 -132946443 + AluJo SINE Alu 28 235 -77 215 226 0 21 chr12 11336175 11336268 -132946221 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 5752 151 27 6 chr12 11336359 11337456 -132945033 - L1MA5 LINE L1 -2 6298 5182 22 70 0 0 chr12 11337554 11337597 -132944892 + AT_rich Low_complexity Low_complexity 1 43 0 580 328 59 11 chr12 11338747 11339034 -132943455 - LTR16B LTR ERVL -51 413 113 2550 154 20 18 chr12 11339078 11339532 -132942957 - MER67C LTR ERV1 0 710 256 1985 280 15 36 chr12 11339773 11340304 -132942185 + MLT1G LTR MaLR 1 542 -48 1141 118 70 0 chr12 11340304 11340491 -132941998 + L1PA11 LINE L1 5972 6171 -3 189 0 0 0 chr12 11340496 11340517 -132941972 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1985 280 15 36 chr12 11340517 11340582 -132941907 + MLT1G LTR MaLR 546 590 0 1987 173 23 45 chr12 11340631 11341116 -132941373 + L1MB8 LINE L1 5695 6168 -10 252 246 0 0 chr12 11341547 11341604 -132940885 - L1M4 LINE L1 -1198 4948 4892 918 10 0 0 chr12 11341682 11341785 -132940704 - L1PA5 LINE L1 -8 6146 6044 201 74 0 0 chr12 11342077 11342104 -132940385 + (T)n Simple_repeat Simple_repeat 1 27 0 578 248 89 9 chr12 11342265 11342479 -132940010 + L1MDa LINE L1 1903 2133 -4407 194 247 56 45 chr12 11342545 11342634 -132939855 - L2 LINE L2 -1103 2211 2122 2243 150 58 27 chr12 11342707 11342747 -132939742 - MSTB LTR MaLR 0 426 389 2267 91 0 3 chr12 11342747 11343054 -132939435 + AluSc SINE Alu 1 306 -3 2243 150 58 27 chr12 11343054 11343302 -132939187 - MSTB LTR MaLR -37 389 119 1219 146 75 0 chr12 11343302 11343515 -132938974 + MER30 DNA MER1_type 1 229 -1 2243 150 58 27 chr12 11343515 11343638 -132938851 - MSTB LTR MaLR -307 119 1 22 99 0 0 chr12 11343747 11343818 -132938671 + AT_rich Low_complexity Low_complexity 1 71 0 5022 248 107 35 chr12 11343898 11344806 -132937683 - L1MDa LINE L1 -3982 2558 1717 1319 199 23 84 chr12 11344806 11345199 -132937290 + MLT1A2 LTR MaLR 4 372 -2 5022 248 107 35 chr12 11345199 11346575 -132935914 - L1MDa LINE L1 -4823 1717 19 192 374 38 57 chr12 11346745 11346956 -132935533 - L3 LINE CR1 -3 1574 1368 24 32 0 0 chr12 11347013 11347044 -132935445 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr12 11347144 11347186 -132935303 + AT_rich Low_complexity Low_complexity 1 42 0 737 236 80 125 chr12 11347212 11347627 -132934862 - MLT1A1 LTR MaLR 0 365 1 783 149 26 32 chr12 11347627 11347781 -132934708 - MLT1A1-int LTR MaLR 0 1735 1583 295 254 24 56 chr12 11349019 11349145 -132933344 + L1MC/D LINE L1 5699 5820 -1988 223 323 40 57 chr12 11349737 11349861 -132932628 - MER5A DNA MER1_type -25 164 43 * 337 328 15 23 chr12 11349755 11349886 -132932603 + MER5A DNA MER1_type 54 183 -6 22 0 0 0 chr12 11350596 11350618 -132931871 + AT_rich Low_complexity Low_complexity 1 22 0 297 276 57 88 chr12 11351874 11352171 -132930318 + L2 LINE L2 2591 2878 -436 24 0 0 0 chr12 11352235 11352259 -132930230 + AT_rich Low_complexity Low_complexity 1 24 0 734 262 83 59 chr12 11354675 11354736 -132927753 + L2 LINE L2 2334 2392 -922 1607 175 22 64 chr12 11354736 11355141 -132927348 - MLT1B LTR MaLR -2 388 1 734 262 83 59 chr12 11355141 11355453 -132927036 + L2 LINE L2 2392 2716 -598 766 324 74 68 chr12 11355453 11356119 -132926370 + L1MA4A LINE L1 1 1058 -6151 275 189 84 42 chr12 11356354 11356449 -132926040 + L1MA4A LINE L1 1050 1148 -6061 3766 264 113 13 chr12 11356463 11357760 -132924729 + L1M2b LINE L1 512 1937 -5272 2411 164 37 0 chr12 11357762 11358171 -132924318 + MSTA LTR MaLR 5 428 0 8621 178 26 5 chr12 11358171 11359787 -132922702 + MSTA-int LTR MaLR 1 1370 -1 2254 166 43 17 chr12 11359788 11360205 -132922284 + MSTA LTR MaLR 1 428 0 3441 166 20 1 chr12 11360205 11360935 -132921554 + L1M2b LINE L1 1943 2686 -4523 7945 196 12 12 chr12 11360947 11362487 -132920002 + L1 LINE L1 19 1558 -6007 8031 181 23 13 chr12 11362500 11363656 -132918833 + L1 LINE L1 4402 5584 -1981 753 98 0 0 chr12 11363656 11363768 -132918721 + (GGGGA)n Simple_repeat Simple_repeat 2 113 0 8031 181 23 13 chr12 11363768 11364404 -132918085 + L1 LINE L1 5584 6212 -1353 1861 146 6 1 chr12 11364406 11364753 -132917736 + LTR25 LTR ERV1 378 566 -3 245 245 21 21 chr12 11364765 11364859 -132917630 + L1 LINE L1 6461 6554 -1011 1847 211 95 4 chr12 11364873 11365399 -132917090 + L1M2b LINE L1 2674 3247 -3962 4807 194 63 41 chr12 11365401 11368352 -132914137 + L1MA4A LINE L1 2720 7354 -11 336 217 83 50 chr12 11368477 11368597 -132913892 - MLT1E2 LTR MaLR -487 139 16 589 246 154 44 chr12 11369077 11369643 -132912846 + HAL1 LINE L1 724 1351 -1156 304 247 0 0 chr12 11369662 11369739 -132912750 - MER115 DNA AcHobo -12 681 605 4008 233 43 27 chr12 11370035 11371134 -132911355 - L1M3f LINE L1 -4205 1123 8 6447 242 39 21 chr12 11371253 11372468 -132910021 + L1PB4 LINE L1 946 2138 -4710 309 0 0 0 chr12 11372468 11372508 -132909981 + L1PA3 LINE L1 6113 6152 -3 6447 242 39 21 chr12 11372508 11374242 -132908247 + L1PB4 LINE L1 2138 3951 -2897 320 194 19 87 chr12 11374248 11374351 -132908138 - L1MC4 LINE L1 -1339 6703 6608 3506 210 37 50 chr12 11374364 11375346 -132907143 + L1PB4 LINE L1 3966 4931 -1917 1289 101 5 0 chr12 11375346 11375534 -132906955 + L1PA13 LINE L1 5971 6159 -4 3506 210 37 50 chr12 11375534 11375741 -132906748 + L1PB4 LINE L1 4931 5139 -1709 209 396 43 0 chr12 11375742 11375881 -132906608 + MIR SINE MIR 67 211 -51 793 213 117 35 chr12 11375960 11376335 -132906154 - L1MDa LINE L1 -3986 2554 2149 541 189 226 12 chr12 11376337 11376501 -132905988 - MLT1D LTR MaLR -58 447 249 201 125 0 50 chr12 11376579 11376619 -132905870 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1370 263 65 33 chr12 11376628 11377412 -132905077 - L1MDa LINE L1 -4471 2069 1261 292 266 13 0 chr12 11377652 11377731 -132904758 - HERVL40 LTR ERVL -3401 2129 2050 1203 235 9 31 chr12 11378076 11378395 -132904094 + AluJb SINE Alu 1 312 0 266 360 73 22 chr12 11378612 11378884 -132903605 - HERVL40 LTR ERVL -4210 1320 1035 4642 207 35 4 chr12 11379082 11380166 -132902323 - HSMAR2 DNA Mariner -179 1123 6 251 213 100 12 chr12 11381022 11381102 -132901387 + HAL1 LINE L1 1272 1358 -1149 254 313 0 0 chr12 11381103 11381199 -132901290 - Zaphod DNA AcHobo -1 4030 3935 2927 206 35 44 chr12 11381531 11382437 -132900052 + L1PB4 LINE L1 5957 6854 -4 2172 100 0 0 chr12 11382458 11382780 -132899709 + AluSg SINE Alu 1 322 0 193 206 15 15 chr12 11382816 11382884 -132899605 + GA-rich Low_complexity Low_complexity 3 70 0 250 296 102 58 chr12 11383156 11383362 -132899127 - MIR SINE MIR -26 236 22 343 227 40 90 chr12 11384221 11384498 -132897991 + L1ME4a LINE L1 5688 5950 -171 196 301 82 82 chr12 11384887 11385033 -132897456 - MER5A DNA MER1_type -1 188 43 526 327 50 29 chr12 11389689 11389970 -132892519 + L2 LINE L2 2498 2784 -530 1242 116 0 6 chr12 11390408 11390581 -132891908 - AluSg/x SINE Alu -12 300 129 816 252 139 25 chr12 11390882 11391235 -132891254 - MLT1D LTR MaLR -101 404 12 868 215 74 3 chr12 11391451 11391735 -132890754 - L1ME LINE L1 -3986 2094 1791 492 204 35 9 chr12 11391746 11391859 -132890630 - MLT1D LTR MaLR -56 449 334 2046 247 48 41 chr12 11391917 11392938 -132889551 - L1ME LINE L1 -4400 1680 655 288 289 109 19 chr12 11393103 11393259 -132889230 - HERVL40 LTR ERVL -3913 1617 1448 282 29 0 0 chr12 11393271 11393306 -132889183 + (TG)n Simple_repeat Simple_repeat 1 35 0 1015 209 0 15 chr12 11393480 11393676 -132888813 + AluJo SINE Alu 3 195 -117 234 128 0 0 chr12 11393681 11393720 -132888769 + (GGGGA)n Simple_repeat Simple_repeat 5 43 0 500 339 64 24 chr12 11393850 11394148 -132888341 - HERVL40 LTR ERVL -4164 1366 1057 260 250 0 0 chr12 11394849 11394913 -132887576 - LTR40a LTR ERVL -353 166 103 470 206 21 0 chr12 11395987 11396084 -132886405 - MER20 DNA MER1_type -6 213 115 307 175 0 16 chr12 11396089 11396152 -132886337 - MER53 DNA DNA -2 187 126 300 135 10 104 chr12 11396255 11396351 -132886138 - MER53 DNA DNA -100 89 3 453 167 88 10 chr12 11396355 11396457 -132886032 - MER20 DNA MER1_type -109 110 1 2482 71 3 0 chr12 11399366 11399663 -132882826 + AluSx SINE Alu 1 298 -14 1054 288 78 6 chr12 11399677 11400021 -132882468 + MLT1G LTR MaLR 5 373 -217 230 175 0 0 chr12 11400025 11400065 -132882424 + MER3 DNA MER1_type 44 83 -126 * 666 207 45 39 chr12 11400034 11400213 -132882276 - MER3 DNA MER1_type -5 204 25 751 262 5 42 chr12 11400247 11400390 -132882099 + MLT1G LTR MaLR 374 508 -82 2019 153 98 23 chr12 11400390 11400788 -132881701 - MSTA LTR MaLR 0 428 1 751 262 5 42 chr12 11400788 11400858 -132881631 + MLT1G LTR MaLR 508 579 -11 975 290 57 44 chr12 11401375 11401834 -132880655 - L2 LINE L2 -21 3292 2828 1693 188 3 22 chr12 11401843 11402210 -132880279 + MSTB2-int LTR MaLR 1285 1644 -7 2307 177 24 31 chr12 11402216 11402674 -132879815 + MSTB2 LTR MaLR 1 455 -2 454 305 114 8 chr12 11402674 11402915 -132879574 + L1M4 LINE L1 3339 3605 -2541 12167 173 22 14 chr12 11402917 11406368 -132876121 + L1PB3 LINE L1 71 3312 -3537 6138 189 18 59 chr12 11406375 11408101 -132874388 + L1PB3 LINE L1 4654 6451 -406 236 132 0 0 chr12 11408101 11408139 -132874350 - Alu SINE Alu -7 295 258 6138 189 18 59 chr12 11408139 11408743 -132873746 + L1PB3 LINE L1 6451 6639 -218 2134 126 3 0 chr12 11408271 11408565 -132873924 + AluSx SINE Alu 1 295 -17 482 256 36 70 chr12 11408565 11408794 -132873695 + L1ME2 LINE L1 5770 5988 -176 2488 219 49 66 chr12 11409234 11409379 -132873110 + L1ME2 LINE L1 5124 5270 -914 2126 130 39 30 chr12 11409379 11409740 -132872749 + THE1B LTR MaLR 1 364 0 2488 219 49 66 chr12 11409740 11410396 -132872093 + L1ME2 LINE L1 5270 5922 -262 186 43 0 0 chr12 11410396 11410419 -132872070 + (TG)n Simple_repeat Simple_repeat 2 24 0 2488 219 49 66 chr12 11410419 11410677 -132871812 + L1ME2 LINE L1 5922 6183 -1 1618 122 47 111 chr12 11413014 11413227 -132869262 - MER44D DNA MER2_type -1882 609 384 788 169 0 0 chr12 11413227 11413357 -132869132 + FLAM_C SINE Alu 2 131 -2 1618 122 47 111 chr12 11413357 11413505 -132868984 - MER44D DNA MER2_type -2107 384 1 1135 221 88 17 chr12 11413598 11414006 -132868483 + Zaphod DNA AcHobo 3569 4005 -26 21 0 0 0 chr12 11414271 11414292 -132868197 + AT_rich Low_complexity Low_complexity 1 21 0 389 265 35 30 chr12 11414426 11414626 -132867863 - L1 LINE L1 -2348 3798 3598 584 274 51 34 chr12 11414875 11415171 -132867318 - L1ME3A LINE L1 -215 5955 5655 344 252 82 13 chr12 11415521 11415680 -132866809 - L1ME3A LINE L1 -3138 3008 2839 773 303 36 24 chr12 11415703 11416073 -132866416 - L1ME3A LINE L1 -3417 2729 2350 2118 86 0 7 chr12 11416073 11416353 -132866136 + AluY SINE Alu 16 293 -18 773 303 36 24 chr12 11416353 11416487 -132866002 - L1ME3A LINE L1 -3796 2350 2219 287 348 101 19 chr12 11416554 11416870 -132865619 + MLT1I LTR MaLR 61 402 -7 2340 172 23 9 chr12 11417160 11417595 -132864894 - MER65A LTR ERV1 0 445 5 2218 89 0 0 chr12 11417733 11418045 -132864444 + AluY SINE Alu 1 312 0 618 264 108 31 chr12 11418530 11418837 -132863652 + MER93b LTR ERV1 63 373 0 2432 122 5 19 chr12 11418855 11419224 -132863265 - THE1B LTR MaLR 0 364 1 1340 203 78 0 chr12 11419652 11419769 -132862720 + AluJb SINE Alu 1 107 -205 362 21 21 0 chr12 11419769 11419816 -132862673 + (TAAAA)n Simple_repeat Simple_repeat 5 52 0 1340 203 78 0 chr12 11419816 11419954 -132862535 + AluJb SINE Alu 107 276 -36 266 260 0 13 chr12 11419954 11420031 -132862458 + (TA)n Simple_repeat Simple_repeat 2 77 0 24 0 0 0 chr12 11420170 11420194 -132862295 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 11420224 11420245 -132862244 + AT_rich Low_complexity Low_complexity 1 21 0 913 165 30 198 chr12 11420664 11420912 -132861577 + MSTB2 LTR MaLR 160 312 -120 2465 96 14 6 chr12 11420912 11421268 -132861221 + L1PA10 LINE L1 5798 6156 -12 913 165 30 198 chr12 11421268 11421372 -132861117 + MSTB2 LTR MaLR 312 432 0 27 73 0 0 chr12 11421712 11421767 -132860722 + AT_rich Low_complexity Low_complexity 1 55 0 1322 210 39 7 chr12 11422783 11423069 -132859420 - AluJb SINE Alu -6 306 12 254 292 45 26 chr12 11423103 11423257 -132859232 - L1M4 LINE L1 -1426 4720 4564 534 330 158 35 chr12 11423421 11424502 -132857987 - L1M4 LINE L1 -1771 4375 3155 228 67 0 0 chr12 11424502 11424532 -132857957 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 534 330 158 35 chr12 11424532 11424549 -132857940 - L1M4 LINE L1 -2991 3155 3141 289 333 60 55 chr12 11424581 11424650 -132857839 + MIR SINE MIR 55 122 -140 1683 172 3 17 chr12 11424650 11424952 -132857537 - AluJb SINE Alu -10 302 5 289 333 60 55 chr12 11424952 11425083 -132857406 + MIR SINE MIR 122 256 -6 339 289 109 39 chr12 11425413 11425697 -132856792 - L1M4 LINE L1 -3415 2731 2428 2823 13 0 0 chr12 11425705 11426014 -132856475 - AluYb8 SINE Alu -9 309 1 2203 107 0 10 chr12 11426015 11426315 -132856174 - AluSq SINE Alu -16 297 1 228 250 140 0 chr12 11426621 11426721 -132855768 - L1M4 LINE L1 -3860 2286 2173 2484 44 27 0 chr12 11426877 11427173 -132855316 - AluY SINE Alu -7 304 1 397 200 149 70 chr12 11427193 11427408 -132855081 - MLT1B LTR MaLR -6 561 330 3861 73 0 2 chr12 11427411 11427945 -132854544 - L1P LINE L1 -2518 3628 3096 1045 156 11 6 chr12 11427951 11428130 -132854359 + MER61E LTR ERV1 339 518 -51 197 279 48 58 chr12 11428775 11428879 -132853610 + MIR SINE MIR 114 216 -46 522 319 43 33 chr12 11429355 11429656 -132852833 - L2 LINE L2 -530 2784 2481 243 180 0 20 chr12 11429727 11429777 -132852712 + MLT1C LTR MaLR 24 72 -395 329 306 8 0 chr12 11434708 11434829 -132847660 - L1MC/D LINE L1 -1988 5820 5699 27 0 0 0 chr12 11436530 11436557 -132845932 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 11436878 11436899 -132845590 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 11437344 11437367 -132845122 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chr12 11438223 11438266 -132844223 + AT_rich Low_complexity Low_complexity 1 43 0 625 220 7 110 chr12 11439287 11439569 -132842920 - L1ME1 LINE L1 -9 6157 5905 747 205 80 35 chr12 11439570 11439770 -132842719 - MLT1B LTR MaLR -181 209 1 261 0 0 0 chr12 11440091 11440120 -132842369 + (TC)n Simple_repeat Simple_repeat 2 30 0 189 107 0 0 chr12 11440119 11440147 -132842342 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 269 237 17 0 chr12 11440159 11440218 -132842271 - HsTC2 DNA Tc2 -2 1896 1837 373 305 84 57 chr12 11440219 11440622 -132841867 + L1M4 LINE L1 3843 4256 -1890 1117 184 0 93 chr12 11442567 11442899 -132839590 + L1MA7 LINE L1 5991 6291 0 43 0 0 0 chr12 11444419 11444462 -132838027 + AT_rich Low_complexity Low_complexity 1 43 0 3209 181 7 3 chr12 11444462 11445046 -132837443 - L1PBa LINE L1 -4939 1924 1339 2166 208 121 8 chr12 11445075 11445581 -132836908 - L1PBa LINE L1 -5706 1157 595 1697 268 46 2 chr12 11445591 11446117 -132836372 - L1PBa LINE L1 -6309 554 6 16798 193 32 10 chr12 11446131 11448172 -132834317 - L1P4 LINE L1 -673 6926 4930 7299 101 7 18 chr12 11448172 11449255 -132833234 - MER11C LTR ERVK 0 1071 1 16798 193 32 10 chr12 11449255 11452334 -132830155 - L1P4 LINE L1 -2669 4930 1690 27 62 0 0 chr12 11452513 11452561 -132829928 + AT_rich Low_complexity Low_complexity 1 48 0 423 274 34 15 chr12 11452964 11453113 -132829376 - L1ME3A LINE L1 -333 5837 5679 30 59 0 0 chr12 11453289 11453340 -132829149 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr12 11453425 11453447 -132829042 + AT_rich Low_complexity Low_complexity 1 22 0 302 326 76 12 chr12 11454786 11454958 -132827531 + MIR SINE MIR 1 183 -79 736 259 45 37 chr12 11455261 11455640 -132826849 + L1M4 LINE L1 4585 4966 -1180 * 15359 222 35 13 chr12 11455631 11457347 -132825142 + L1PA15 LINE L1 1196 2873 -3943 1615 196 0 29 chr12 11457347 11457663 -132824826 - AluJb SINE Alu -5 307 1 15359 222 35 13 chr12 11457663 11461462 -132821027 + L1PA15 LINE L1 2873 6816 0 2270 296 65 10 chr12 11461490 11462349 -132820140 - L2 LINE L2 -245 3068 2156 230 169 0 84 chr12 11462350 11462421 -132820068 + L1M4 LINE L1 4942 5006 -1140 729 312 173 3 chr12 11462694 11463024 -132819465 - L2 LINE L2 -1115 2199 1814 1151 314 76 42 chr12 11463207 11464143 -132818346 + HERVL LTR ERVL 2334 3301 -2353 232 320 62 0 chr12 11464159 11464256 -132818233 - L2 LINE L2 -1203 2111 2009 264 333 14 0 chr12 11464310 11464382 -132818107 - MER45 DNA AcHobo -967 73 1 24 0 0 0 chr12 11465104 11465128 -132817361 + AT_rich Low_complexity Low_complexity 1 24 0 276 296 45 85 chr12 11465560 11465652 -132816837 - L2 LINE L2 0 3313 3230 2378 66 0 3 chr12 11465652 11465956 -132816533 - AluY SINE Alu -8 303 1 276 296 45 85 chr12 11465956 11466039 -132816450 - L2 LINE L2 -83 3230 3145 192 158 0 0 chr12 11468885 11468923 -132813566 + (CA)n Simple_repeat Simple_repeat 2 39 0 2498 61 0 6 chr12 11469720 11470033 -132812456 + AluY SINE Alu 1 311 0 23 33 0 0 chr12 11470211 11470241 -132812248 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr12 11470511 11470540 -132811949 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1214 118 21 0 chr12 11470808 11470994 -132811495 + AluSg/x SINE Alu 120 309 -3 1849 226 60 93 chr12 11471569 11472383 -132810106 - LTR1B LTR ERV1 -39 787 1 2005 131 0 7 chr12 11472683 11472986 -132809503 - AluSx SINE Alu 0 303 3 24 0 0 0 chr12 11473412 11473436 -132809053 + AT_rich Low_complexity Low_complexity 1 24 0 2231 100 3 7 chr12 11473442 11473752 -132808737 - AluSq SINE Alu -4 309 1 467 257 106 32 chr12 11474304 11474600 -132807889 - L1MB8 LINE L1 -333 5845 5512 31 76 0 0 chr12 11474642 11474708 -132807781 + AT_rich Low_complexity Low_complexity 1 66 0 33 0 0 0 chr12 11476029 11476062 -132806427 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr12 11476145 11476175 -132806314 + AT_rich Low_complexity Low_complexity 1 30 0 215 294 61 75 chr12 11476250 11476478 -132806011 + MIR SINE MIR 6 230 -32 776 271 50 21 chr12 11476732 11477112 -132805377 + L1M4 LINE L1 4576 4966 -1180 * 3895 225 7 11 chr12 11477103 11477934 -132804555 + L1PA15 LINE L1 1196 2023 -4764 15037 226 21 11 chr12 11477974 11481787 -132800702 + L1PA15 LINE L1 2306 6081 -736 279 0 0 0 chr12 11481787 11481818 -132800671 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 15037 226 21 11 chr12 11481818 11481880 -132800609 + L1PA15 LINE L1 6081 6141 -676 1735 158 0 0 chr12 11481880 11482155 -132800334 + L1PA15 LINE L1 6533 6811 -5 15037 226 21 11 chr12 11482155 11482186 -132800303 + L1PA15 LINE L1 6141 6243 -574 2125 309 78 9 chr12 11482257 11483024 -132799465 - L2 LINE L2 -338 2976 2157 234 182 80 68 chr12 11483027 11483115 -132799374 + L1M4 LINE L1 4942 5030 -1116 203 211 19 0 chr12 11483430 11483482 -132799007 + (TA)n Simple_repeat Simple_repeat 1 53 0 681 310 176 3 chr12 11483531 11483860 -132798629 - L2 LINE L2 -1115 2199 1814 312 356 41 26 chr12 11483953 11484220 -132798269 + ERVL LTR ERVL 1774 2044 -3720 2323 97 3 3 chr12 11484252 11484560 -132797929 - AluSx SINE Alu -4 308 1 1454 230 10 0 chr12 11484575 11484871 -132797618 - AluJo SINE Alu -3 309 11 874 329 78 44 chr12 11484883 11486124 -132796365 + ERVL LTR ERVL 2015 3299 -1900 308 254 9 140 chr12 11486124 11486238 -132796251 - MER45 DNA AcHobo -1482 99 1 440 292 43 43 chr12 11487383 11487544 -132794945 - L2 LINE L2 0 3313 3153 240 35 0 0 chr12 11490425 11490454 -132792035 + (GA)n Simple_repeat Simple_repeat 2 30 0 22 56 0 0 chr12 11490655 11490691 -132791798 + AT_rich Low_complexity Low_complexity 1 36 0 250 307 0 61 chr12 11491957 11492071 -132790418 + C-rich Low_complexity Low_complexity 1 107 0 252 296 102 58 chr12 11492965 11493171 -132789318 + MIR SINE MIR 22 236 -26 193 206 15 15 chr12 11493443 11493511 -132788978 + CT-rich Low_complexity Low_complexity 3 70 0 2071 107 0 14 chr12 11493547 11493875 -132788614 - AluSx SINE Alu 0 324 1 228 250 140 0 chr12 11494181 11494281 -132788208 - L1M4 LINE L1 -3860 2286 2173 2429 51 27 0 chr12 11494437 11494733 -132787756 - AluY SINE Alu -7 304 1 386 200 153 74 chr12 11494753 11494968 -132787521 - MLT1B LTR MaLR -6 561 330 3861 73 0 2 chr12 11494971 11495505 -132786984 - L1P LINE L1 -2518 3628 3096 1045 156 11 6 chr12 11495511 11495690 -132786799 + MER61E LTR ERV1 339 518 -51 197 279 48 58 chr12 11496335 11496439 -132786050 + MIR SINE MIR 114 216 -46 522 319 43 33 chr12 11496915 11497216 -132785273 - L2 LINE L2 -530 2784 2481 243 180 0 20 chr12 11497287 11497337 -132785152 + MLT1B LTR MaLR 24 72 -318 329 306 8 0 chr12 11502268 11502389 -132780100 - L1MC/D LINE L1 -1988 5820 5699 27 0 0 0 chr12 11504090 11504117 -132778372 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 11504438 11504459 -132778030 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 11504904 11504927 -132777562 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chr12 11505783 11505826 -132776663 + AT_rich Low_complexity Low_complexity 1 43 0 625 220 7 110 chr12 11506847 11507129 -132775360 - L1ME1 LINE L1 -9 6157 5905 747 205 80 35 chr12 11507130 11507330 -132775159 - MLT1B LTR MaLR -181 209 1 261 0 0 0 chr12 11507651 11507680 -132774809 + (TC)n Simple_repeat Simple_repeat 2 30 0 189 107 0 0 chr12 11507679 11507707 -132774782 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 269 237 17 0 chr12 11507719 11507778 -132774711 - HsTC2 DNA Tc2 -2 1896 1837 373 305 84 57 chr12 11507779 11508182 -132774307 + L1M4 LINE L1 3843 4256 -1890 1077 175 18 109 chr12 11510127 11510458 -132772031 + L1MA7 LINE L1 5991 6291 0 43 0 0 0 chr12 11511978 11512021 -132770468 + AT_rich Low_complexity Low_complexity 1 43 0 3209 181 7 3 chr12 11512021 11512605 -132769884 - L1PBa LINE L1 -4939 1924 1339 2166 208 121 8 chr12 11512634 11513140 -132769349 - L1PBa LINE L1 -5706 1157 595 1697 268 46 2 chr12 11513150 11513676 -132768813 - L1PBa LINE L1 -6309 554 6 16745 194 32 11 chr12 11513690 11515731 -132766758 - L1P4 LINE L1 -673 6926 4929 7299 101 7 18 chr12 11515731 11516814 -132765675 - MER11C LTR ERVK 0 1071 1 16745 194 32 11 chr12 11516814 11519894 -132762595 - L1P4 LINE L1 -2670 4929 1690 27 62 0 0 chr12 11520073 11520121 -132762368 + AT_rich Low_complexity Low_complexity 1 48 0 423 274 34 15 chr12 11520524 11520673 -132761816 - L1ME3A LINE L1 -333 5837 5679 30 59 0 0 chr12 11520849 11520900 -132761589 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr12 11520985 11521007 -132761482 + AT_rich Low_complexity Low_complexity 1 22 0 309 337 76 12 chr12 11522346 11522518 -132759971 + MIR SINE MIR 1 183 -79 736 259 45 37 chr12 11522821 11523200 -132759289 + L1M4 LINE L1 4585 4966 -1180 * 15295 222 34 13 chr12 11523191 11524907 -132757582 + L1PA15 LINE L1 1196 2874 -3942 1615 196 0 29 chr12 11524907 11525223 -132757266 - AluJb SINE Alu -5 307 1 15295 222 34 13 chr12 11525223 11529023 -132753466 + L1PA15 LINE L1 2874 6816 0 2023 304 62 30 chr12 11529051 11529928 -132752561 - L2 LINE L2 -245 3068 2157 247 202 0 48 chr12 11529932 11530016 -132752473 + L1M4 LINE L1 4942 5021 -1125 668 323 159 3 chr12 11530413 11530747 -132751742 - L2 LINE L2 -1115 2199 1814 322 329 39 43 chr12 11530829 11531084 -132751405 + HERVL LTR ERVL 1716 1969 -3027 885 186 61 84 chr12 11531158 11531421 -132751068 - AluJo SINE Alu -14 298 42 311 256 98 74 chr12 11531684 11531887 -132750602 + MIR SINE MIR 5 212 -50 1587 167 45 7 chr12 11531988 11532276 -132750213 - AluJo SINE Alu -13 299 1 1342 246 22 16 chr12 11532464 11532915 -132749574 + L1M4 LINE L1 4576 5029 -1117 21 57 0 0 chr12 11533056 11533091 -132749398 + AT_rich Low_complexity Low_complexity 1 35 0 1322 219 14 7 chr12 11533158 11533446 -132749043 - AluJb SINE Alu -18 294 5 583 338 180 3 chr12 11533603 11533931 -132748558 - L2 LINE L2 -1115 2199 1814 3025 186 57 58 chr12 11534257 11534982 -132747507 + MER50 LTR ERV1 3 726 -8 1020 223 3 94 chr12 11535100 11535190 -132747299 - AluJo SINE Alu -23 289 192 1578 183 68 122 chr12 11535190 11535836 -132746653 + LTR36 LTR ERV1 1 611 0 1020 223 3 94 chr12 11535836 11536063 -132746426 - AluJo SINE Alu -120 192 1 810 323 92 23 chr12 11536068 11536678 -132745811 + HERVL LTR ERVL 2018 2687 -2816 21 0 0 0 chr12 11536697 11536718 -132745771 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 11536898 11536922 -132745567 + AT_rich Low_complexity Low_complexity 1 24 0 1716 144 10 38 chr12 11536922 11537214 -132745275 - AluSx SINE Alu -27 285 2 250 333 0 0 chr12 11537251 11537338 -132745151 + HERVL LTR ERVL 2937 3023 -2631 404 312 0 7 chr12 11537410 11537548 -132744941 + HERVL LTR ERVL 3071 3207 -2557 273 329 12 0 chr12 11537692 11537774 -132744715 - MER45 DNA AcHobo -1495 86 4 620 298 27 18 chr12 11537946 11538171 -132744318 - LTR36 LTR ERV1 0 611 385 811 160 148 40 chr12 11538221 11538471 -132744018 - LTR36 LTR ERV1 -332 279 3 535 272 24 35 chr12 11539175 11539344 -132743145 - LTR38-int LTR ERV1 -1496 290 124 387 106 0 0 chr12 11539786 11539852 -132742637 + (TA)n Simple_repeat Simple_repeat 2 67 0 266 266 25 13 chr12 11543730 11543809 -132738680 - L1ME3 LINE L1 -81 6081 6002 544 283 72 13 chr12 11543919 11544237 -132738252 - L1ME3 LINE L1 -206 5956 5620 1603 70 14 5 chr12 11544445 11544659 -132737830 - AluY SINE Alu -13 298 83 270 239 122 55 chr12 11545028 11545266 -132737223 - L1MEd LINE L1 -4944 1175 922 1562 189 31 3 chr12 11545460 11545751 -132736738 - AluJo SINE Alu -13 299 1 1400 325 79 44 chr12 11545822 11546408 -132736081 + HERVL LTR ERVL 2096 2660 -2994 1620 199 0 0 chr12 11546408 11546715 -132735774 + AluJb SINE Alu 3 309 0 1400 325 79 44 chr12 11546715 11547286 -132735203 + HERVL LTR ERVL 2660 3295 -2359 233 344 0 0 chr12 11547290 11547351 -132735138 - MER45 DNA AcHobo -1482 99 39 21 57 0 0 chr12 11548632 11548667 -132733822 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 11550353 11550374 -132732115 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr12 11550721 11550755 -132731734 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 3238 128 14 8 chr12 11552638 11553146 -132729343 - MER9 LTR ERVK 0 511 1 26 0 0 0 chr12 11553184 11553210 -132729279 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 11553983 11554005 -132728484 + AT_rich Low_complexity Low_complexity 1 22 0 556 298 76 9 chr12 11554256 11554572 -132727917 - L1ME3 LINE L1 -206 5956 5620 253 215 136 63 chr12 11555150 11555341 -132727148 - L1MEd LINE L1 -4971 1148 944 183 80 0 0 chr12 11556243 11556268 -132726221 + (ATG)n Simple_repeat Simple_repeat 1 25 0 1912 148 3 0 chr12 11556397 11556680 -132725809 - AluSq SINE Alu -29 284 1 1068 50 47 285 chr12 11557357 11557655 -132724834 - AluY SINE Alu -5 306 80 212 147 0 0 chr12 11558564 11558598 -132723891 + (CA)n Simple_repeat Simple_repeat 2 35 0 304 293 48 54 chr12 11558963 11559110 -132723379 + MIR SINE MIR 5 150 -112 1687 175 3 3 chr12 11559110 11559401 -132723088 + AluSx SINE Alu 13 303 -9 1616 192 31 0 chr12 11559568 11559860 -132722629 - AluJo SINE Alu -11 301 1 1369 334 70 45 chr12 11559867 11560533 -132721956 + HERVL LTR ERVL 2019 2732 -2922 1503 189 48 0 chr12 11560533 11560803 -132721686 + AluJb SINE Alu 3 285 -27 1369 334 70 45 chr12 11560803 11561375 -132721114 + HERVL LTR ERVL 2732 3288 -2366 1866 100 4 4 chr12 11562446 11562707 -132719782 - AluSc SINE Alu -5 304 44 24 32 0 0 chr12 11563154 11563185 -132719304 + AT_rich Low_complexity Low_complexity 1 31 0 873 185 43 96 chr12 11564012 11564293 -132718196 + LTR12 LTR ERV1 1 266 -448 879 328 6 20 chr12 11564314 11564656 -132717833 + HERVL LTR ERVL 2832 3168 -2486 249 354 12 0 chr12 11564800 11564882 -132717607 - MER45 DNA AcHobo -954 86 4 562 281 34 17 chr12 11565054 11565232 -132717257 - LTR36 LTR ERV1 0 611 431 801 161 142 51 chr12 11565330 11565584 -132716905 - LTR36 LTR ERV1 -332 279 3 21 0 0 0 chr12 11566078 11566099 -132716390 + AT_rich Low_complexity Low_complexity 1 21 0 466 304 23 35 chr12 11566292 11566463 -132716026 - LTR38-int LTR ERV1 -1494 292 124 215 309 71 36 chr12 11566770 11566938 -132715551 - L2 LINE L2 -5 3308 3135 209 135 27 0 chr12 11566941 11566978 -132715511 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr12 11569992 11570022 -132712467 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 11570794 11570816 -132711673 + AT_rich Low_complexity Low_complexity 1 22 0 251 260 26 13 chr12 11570877 11570954 -132711535 - L1ME3 LINE L1 -81 6081 6004 661 292 73 3 chr12 11571068 11571383 -132711106 - L1ME3 LINE L1 -206 5956 5620 31 76 0 0 chr12 11573033 11573099 -132709390 + AT_rich Low_complexity Low_complexity 1 66 0 467 257 106 32 chr12 11573141 11573437 -132709052 + L1ME3A LINE L1 5512 5845 -333 2231 100 3 7 chr12 11573989 11574299 -132708190 + AluSq SINE Alu 1 309 -4 24 0 0 0 chr12 11574305 11574329 -132708160 + AT_rich Low_complexity Low_complexity 1 24 0 2106 130 0 7 chr12 11574755 11575054 -132707435 + AluSx SINE Alu 3 299 -13 26 50 0 0 chr12 11575973 11576013 -132706476 + AT_rich Low_complexity Low_complexity 1 40 0 28 61 0 0 chr12 11576116 11576165 -132706324 + AT_rich Low_complexity Low_complexity 1 49 0 480 254 120 36 chr12 11576182 11576490 -132705999 + L1ME3A LINE L1 5499 5847 -331 216 97 0 0 chr12 11576783 11576814 -132705675 + (T)n Simple_repeat Simple_repeat 1 31 0 286 261 45 0 chr12 11576816 11576904 -132705585 + Charlie7 DNA MER1_type 2170 2261 -351 21 0 0 0 chr12 11577276 11577297 -132705192 + AT_rich Low_complexity Low_complexity 1 21 0 8982 52 5 2 chr12 11577297 11579222 -132703267 - L1PA5 LINE L1 0 6154 4222 1631 187 3 7 chr12 11579491 11579791 -132702698 - AluJb SINE Alu -13 299 1 27 29 0 0 chr12 11580001 11580035 -132702454 + AT_rich Low_complexity Low_complexity 1 34 0 378 245 20 41 chr12 11580588 11580735 -132701754 + MER50 LTR ERV1 575 718 -16 419 209 0 44 chr12 11580865 11580956 -132701533 - AluJ SINE Alu -23 289 203 800 171 5 37 chr12 11580956 11581143 -132701346 + LTR36 LTR ERV1 1 181 -430 832 254 84 25 chr12 11581311 11581369 -132701120 + LTR36 LTR ERV1 293 346 -265 1820 218 81 11 chr12 11581369 11581841 -132700648 + LTR22 LTR ERVK 1 505 -4 832 254 84 25 chr12 11581841 11582066 -132700423 + LTR36 LTR ERV1 346 593 -18 853 211 0 84 chr12 11582081 11582308 -132700181 - AluJ SINE Alu -104 208 1 714 345 63 25 chr12 11582385 11582939 -132699550 + ERVL LTR ERVL 2141 2715 -3049 1636 150 14 24 chr12 11583145 11583456 -132699033 - AluSx SINE Alu 0 308 1 1330 339 53 43 chr12 11583552 11584111 -132698378 + ERVL LTR ERVL 2132 2709 -2945 1595 197 0 0 chr12 11584111 11584395 -132698094 + AluJb SINE Alu 3 286 -26 1330 339 53 43 chr12 11584395 11584905 -132697584 + ERVL LTR ERVL 2709 3212 -2442 239 270 51 73 chr12 11586129 11586266 -132696223 - L2 LINE L2 0 3313 3180 22 80 0 0 chr12 11587262 11587312 -132695177 + AT_rich Low_complexity Low_complexity 1 50 0 205 163 47 0 chr12 11587432 11587475 -132695014 + (CATA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr12 11588086 11588107 -132694382 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr12 11588351 11588399 -132694090 + AT_rich Low_complexity Low_complexity 1 48 0 1039 198 31 55 chr12 11588620 11588897 -132693592 + LTR10B LTR ERV1 312 547 0 403 239 27 12 chr12 11588897 11589038 -132693451 - L1ME LINE L1 -347 5823 5678 2040 139 0 25 chr12 11589359 11589705 -132692784 - AluY SINE Alu 0 338 1 279 277 54 61 chr12 11591069 11591217 -132691272 + MIR SINE MIR 5 151 -111 1661 161 11 3 chr12 11591217 11591502 -132690987 + AluSx SINE Alu 1 287 -25 1687 175 31 3 chr12 11591688 11591979 -132690510 - AluJo SINE Alu -13 299 1 1407 341 57 32 chr12 11592056 11592646 -132689843 + ERVL LTR ERVL 2141 2714 -3050 1291 203 0 28 chr12 11592646 11592961 -132689528 + AluJb SINE Alu 3 309 0 1407 341 57 32 chr12 11592961 11593539 -132688950 + ERVL LTR ERVL 2714 3340 -2424 292 333 39 39 chr12 11594586 11594742 -132687747 - L2 LINE L2 0 3313 3158 195 100 0 0 chr12 11595817 11595847 -132686642 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 252 0 0 0 chr12 11595846 11595874 -132686615 + (TA)n Simple_repeat Simple_repeat 2 29 0 427 220 158 46 chr12 11597329 11597588 -132684901 - L1MEd LINE L1 -4910 1209 922 1819 157 3 7 chr12 11598596 11598890 -132683599 - AluSq SINE Alu -19 294 2 728 334 30 34 chr12 11599140 11599641 -132682848 + ERVL LTR ERVL 2803 3301 -2353 21 0 0 0 chr12 11600953 11600974 -132681515 + GC_rich Low_complexity Low_complexity 1 21 0 1102 129 0 0 chr12 11601159 11601330 -132681159 - L1 LINE L1 -1307 4839 4669 266 305 32 19 chr12 11601391 11601545 -132680944 + L1MEc LINE L1 1419 1574 -4822 589 302 63 7 chr12 11601853 11602169 -132680320 + L1ME3 LINE L1 5618 5948 -216 2347 84 0 3 chr12 11602224 11602521 -132679968 + AluSx SINE Alu 1 296 -16 397 219 37 106 chr12 11603130 11603425 -132679064 - L1ME3 LINE L1 -230 5940 5677 22 0 0 0 chr12 11603696 11603718 -132678771 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 11603843 11603864 -132678625 + AT_rich Low_complexity Low_complexity 1 21 0 627 151 0 2 chr12 11605364 11605479 -132677010 - LTR12 LTR ERV1 0 714 175 244 214 34 22 chr12 11605482 11605571 -132676918 - LTR30 LTR ERV1 -80 642 553 888 200 33 83 chr12 11605572 11605872 -132676617 - LTR12 LTR ERV1 -429 285 1 27 0 0 0 chr12 11606709 11606736 -132675753 + AT_rich Low_complexity Low_complexity 1 27 0 1774 102 0 4 chr12 11607133 11607369 -132675120 + AluSc SINE Alu 43 277 -32 351 0 0 0 chr12 11607371 11607410 -132675079 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 605 301 95 0 chr12 11608076 11608382 -132674107 - L1ME3A LINE L1 -208 5962 5628 1134 208 114 0 chr12 11608637 11608882 -132673607 + AluJo SINE Alu 1 273 -39 27 73 0 0 chr12 11608898 11608953 -132673536 + AT_rich Low_complexity Low_complexity 1 55 0 396 270 162 27 chr12 11609002 11609447 -132673042 - L1MEd LINE L1 -4842 1468 934 2190 65 7 0 chr12 11609883 11610185 -132672304 - AluY SINE Alu 0 307 4 22 0 0 0 chr12 11611527 11611549 -132670940 + AT_rich Low_complexity Low_complexity 1 22 0 1595 199 0 7 chr12 11611753 11612054 -132670435 + AluJb SINE Alu 1 299 -13 496 259 112 89 chr12 11612467 11612919 -132669570 - L1ME3 LINE L1 -230 5940 5480 189 178 0 0 chr12 11613797 11613842 -132668647 + (CATA)n Simple_repeat Simple_repeat 1 45 0 310 223 62 69 chr12 11614255 11614385 -132668104 + MIR SINE MIR 8 136 -126 2520 62 15 0 chr12 11614389 11614714 -132667775 + L1PA7 LINE L1 5821 6150 -4 14260 181 20 27 chr12 11614714 11616636 -132665853 + L1MA2 LINE L1 3173 5108 -2615 2464 74 0 0 chr12 11616636 11616947 -132665542 - AluY SINE Alu 0 311 1 14260 181 20 27 chr12 11616947 11619595 -132662894 + L1MA2 LINE L1 5108 7723 0 27 49 0 0 chr12 11619903 11619944 -132662545 + AT_rich Low_complexity Low_complexity 1 41 0 1516 262 64 9 chr12 11620310 11620745 -132661744 - L1MEd LINE L1 -5577 542 84 248 280 151 21 chr12 11621006 11621192 -132661297 + MLT1G LTR MaLR 10 219 -371 21 0 0 0 chr12 11621810 11621831 -132660658 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr12 11622178 11622220 -132660269 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 3210 126 14 8 chr12 11624103 11624611 -132657878 - MER9 LTR ERVK 0 511 1 26 0 0 0 chr12 11624649 11624675 -132657814 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 11625448 11625470 -132657019 + AT_rich Low_complexity Low_complexity 1 22 0 573 305 76 6 chr12 11625721 11626036 -132656453 - L1ME3 LINE L1 -206 5939 5603 315 334 104 28 chr12 11626289 11626606 -132655883 - L1ME3 LINE L1 -4762 1548 1208 275 215 136 63 chr12 11626614 11626805 -132655684 - L1ME3 LINE L1 -4971 1148 944 183 80 0 0 chr12 11627707 11627732 -132654757 + (ATG)n Simple_repeat Simple_repeat 1 25 0 1803 161 4 0 chr12 11627861 11628141 -132654348 - AluSq SINE Alu -29 284 4 1987 64 0 181 chr12 11628818 11629194 -132653295 - AluY SINE Alu -3 308 1 22 56 0 0 chr12 11629262 11629298 -132653191 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 11629389 11629412 -132653077 + AT_rich Low_complexity Low_complexity 1 23 0 402 256 21 103 chr12 11629700 11629942 -132652547 - L1ME3 LINE L1 -232 5938 5717 4504 72 16 0 chr12 11629962 11630754 -132651735 + L1PA6 LINE L1 5064 5864 -290 26 30 0 0 chr12 11630883 11630916 -132651573 + AT_rich Low_complexity Low_complexity 1 33 0 212 147 0 0 chr12 11631879 11631913 -132650576 + (CA)n Simple_repeat Simple_repeat 2 35 0 301 293 48 54 chr12 11632278 11632425 -132650064 + MIR SINE MIR 5 150 -112 1671 172 3 3 chr12 11632425 11632716 -132649773 + AluSx SINE Alu 13 303 -9 1577 193 31 0 chr12 11632883 11633173 -132649316 - AluJo SINE Alu -13 299 1 1349 352 54 37 chr12 11633250 11633844 -132648645 + HERVL LTR ERVL 2141 2723 -3041 1472 189 48 0 chr12 11633844 11634114 -132648375 + AluJb SINE Alu 3 285 -27 1349 352 54 37 chr12 11634114 11634686 -132647803 + HERVL LTR ERVL 2723 3327 -2437 243 270 51 73 chr12 11635740 11635877 -132646612 - L2 LINE L2 0 3313 3180 22 80 0 0 chr12 11636873 11636923 -132645566 + AT_rich Low_complexity Low_complexity 1 50 0 205 163 47 0 chr12 11637043 11637086 -132645403 + (CATA)n Simple_repeat Simple_repeat 1 45 0 650 294 92 0 chr12 11640100 11640416 -132642073 - L1ME3A LINE L1 -208 5962 5618 948 225 131 0 chr12 11640665 11640909 -132641580 + AluJo SINE Alu 1 276 -36 374 337 18 12 chr12 11641018 11641181 -132641308 - HAL1 LINE L1 -954 1553 1390 424 222 111 56 chr12 11641273 11641471 -132641018 - L1MEd LINE L1 -4967 1152 944 21 36 0 0 chr12 11643101 11643129 -132639360 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 11643423 11643446 -132639043 + AT_rich Low_complexity Low_complexity 1 23 0 1562 194 0 3 chr12 11643468 11643756 -132638733 + AluJb SINE Alu 12 298 -14 425 192 21 175 chr12 11644185 11644419 -132638070 - L1ME1 LINE L1 -224 5938 5738 321 277 0 0 chr12 11644422 11644516 -132637973 + L1M4 LINE L1 4936 5029 -1117 1215 204 13 43 chr12 11644790 11645094 -132637395 - AluJb SINE Alu -7 295 1 481 346 178 15 chr12 11645247 11645579 -132636910 - L2 LINE L2 -1115 2199 1814 295 374 15 0 chr12 11645659 11645854 -132636635 + HERVL LTR ERVL 1723 1920 -3734 2005 202 67 27 chr12 11645895 11646419 -132636070 + MER50 LTR ERV1 3 547 -187 189 132 0 0 chr12 11647033 11647071 -132635418 + (T)n Simple_repeat Simple_repeat 1 38 0 1127 42 0 7 chr12 11647072 11647214 -132635275 - L1PA3 LINE L1 0 6155 6015 21 36 0 0 chr12 11647834 11647862 -132634627 + AT_rich Low_complexity Low_complexity 1 28 0 1541 198 0 3 chr12 11648200 11648488 -132634001 + AluJb SINE Alu 12 298 -14 425 192 21 175 chr12 11648918 11649152 -132633337 - L1ME1 LINE L1 -224 5938 5738 333 266 0 0 chr12 11649155 11649249 -132633240 + L1M4 LINE L1 4936 5029 -1117 1163 243 10 7 chr12 11649521 11649817 -132632672 - AluJb SINE Alu -1 301 5 470 354 183 6 chr12 11649974 11650302 -132632187 - L2 LINE L2 -1115 2199 1814 310 332 35 16 chr12 11650374 11650590 -132631899 + HERVL LTR ERVL 1715 1926 -3070 2715 178 66 88 chr12 11650618 11651359 -132631130 + MER50 LTR ERV1 3 727 -7 490 172 0 43 chr12 11651477 11651570 -132630919 - AluJo SINE Alu -21 291 203 1281 204 48 130 chr12 11651570 11651990 -132630499 + LTR36 LTR ERV1 1 351 -260 1884 191 89 17 chr12 11651990 11652461 -132630028 + LTR22 LTR ERVK 1 505 -4 1281 204 48 130 chr12 11652461 11652686 -132629803 + LTR36 LTR ERV1 351 593 -18 805 224 0 86 chr12 11652697 11652929 -132629560 - AluJo SINE Alu -100 212 1 750 320 95 24 chr12 11652934 11653431 -132629058 + HERVL LTR ERVL 2017 2548 -2937 375 330 17 52 chr12 11653666 11653762 -132628727 + HERVL LTR ERVL 2803 2901 -2753 1584 169 18 21 chr12 11653762 11654086 -132628403 - AluSx SINE Alu 0 324 2 375 330 17 52 chr12 11654086 11654221 -132628268 + HERVL LTR ERVL 2901 3027 -2627 448 288 0 8 chr12 11654289 11654427 -132628062 + HERVL LTR ERVL 3047 3168 -2486 406 256 40 16 chr12 11654884 11655009 -132627480 - LTR36 LTR ERV1 -44 567 440 818 170 158 35 chr12 11655106 11655365 -132627124 - LTR36 LTR ERV1 -318 293 3 536 291 42 18 chr12 11656073 11656238 -132626251 - LTR38-int LTR ERV1 -1494 292 124 182 118 29 0 chr12 11656687 11656721 -132625768 + (TA)n Simple_repeat Simple_repeat 2 36 0 223 260 39 0 chr12 11657781 11657858 -132624631 + (TA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chr12 11659784 11659806 -132622683 + AT_rich Low_complexity Low_complexity 1 22 0 246 288 25 12 chr12 11660661 11660741 -132621748 - L1ME3 LINE L1 -81 6064 5984 553 248 133 28 chr12 11660850 11661173 -132621316 - L1ME3 LINE L1 -214 5939 5583 384 255 147 22 chr12 11661575 11661953 -132620536 - L1ME3 LINE L1 -4910 1209 924 183 80 0 0 chr12 11662824 11662849 -132619640 + (ATG)n Simple_repeat Simple_repeat 1 25 0 1895 149 7 0 chr12 11662960 11663255 -132619234 - AluSq SINE Alu -15 298 2 25 31 0 0 chr12 11664003 11664035 -132618454 + AT_rich Low_complexity Low_complexity 1 32 0 22 80 0 0 chr12 11664445 11664495 -132617994 + AT_rich Low_complexity Low_complexity 1 50 0 1031 212 40 26 chr12 11664685 11664981 -132617508 + LTR10B LTR ERV1 226 547 0 478 300 90 10 chr12 11664981 11665280 -132617209 - L1ME LINE L1 -347 5823 5483 24 77 0 0 chr12 11665417 11665469 -132617020 + AT_rich Low_complexity Low_complexity 1 52 0 218 317 55 41 chr12 11666818 11666963 -132615526 + MIR SINE MIR 5 151 -111 1839 163 3 0 chr12 11666963 11667258 -132615231 + AluSx SINE Alu 1 296 -16 1543 184 38 3 chr12 11667434 11667727 -132614762 - AluJo SINE Alu -9 303 1 1612 332 46 36 chr12 11667804 11668394 -132614095 + HERVL LTR ERVL 2102 2708 -2946 1479 209 3 0 chr12 11668394 11668677 -132613812 + AluJb SINE Alu 3 286 -26 1612 332 46 36 chr12 11668677 11669131 -132613358 + HERVL LTR ERVL 2708 3156 -2498 1736 96 54 8 chr12 11669436 11669697 -132612792 - AluY SINE Alu -5 306 34 369 308 39 39 chr12 11669994 11670150 -132612339 - L2 LINE L2 0 3313 3158 207 100 0 0 chr12 11671238 11671268 -132611221 + (CA)n Simple_repeat Simple_repeat 1 30 0 821 173 74 189 chr12 11672383 11673012 -132609477 - LTR12 LTR ERV1 -228 1683 69 225 278 0 0 chr12 11673019 11673073 -132609416 - LTR30 LTR ERV1 -668 54 1 31 0 0 0 chr12 11673909 11673940 -132608549 + AT_rich Low_complexity Low_complexity 1 31 0 1803 111 0 4 chr12 11674335 11674587 -132607902 + AluSc SINE Alu 42 292 -17 27 29 0 0 chr12 11675840 11675874 -132606615 + AT_rich Low_complexity Low_complexity 1 34 0 1615 183 3 7 chr12 11676084 11676384 -132606105 + AluJo SINE Alu 1 299 -13 9007 50 2 1 chr12 11676653 11678583 -132603906 + L1PA5 LINE L1 4222 6154 0 21 0 0 0 chr12 11678583 11678604 -132603885 + AT_rich Low_complexity Low_complexity 1 21 0 292 261 45 0 chr12 11678973 11679061 -132603428 - Charlie7 DNA MER1_type -351 2261 2170 216 97 0 0 chr12 11679063 11679094 -132603395 + (A)n Simple_repeat Simple_repeat 1 31 0 280 254 39 39 chr12 11679393 11679413 -132603076 - L1M4 LINE L1 -328 5846 5827 479 272 178 31 chr12 11679413 11679700 -132602789 - L1ME3A LINE L1 -343 5827 5499 21 82 0 0 chr12 11679717 11679766 -132602723 + AT_rich Low_complexity Low_complexity 1 49 0 26 50 0 0 chr12 11679871 11679911 -132602578 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr12 11681189 11681224 -132601265 + AT_rich Low_complexity Low_complexity 1 35 0 324 337 63 17 chr12 11681299 11681474 -132601015 + MIR SINE MIR 1 183 -79 1299 207 41 4 chr12 11681624 11681895 -132600594 - AluJo SINE Alu -31 281 1 978 243 29 20 chr12 11682076 11682418 -132600071 + L1M4 LINE L1 4576 4920 -1226 2614 126 23 54 chr12 11682427 11682943 -132599546 + L1MA2 LINE L1 2664 3163 -4402 6223 121 13 60 chr12 11682970 11689257 -132593232 + L1PA7 LINE L1 12 6151 -3 14537 176 13 19 chr12 11689257 11691008 -132591481 + L1MA2 LINE L1 3170 4929 -2794 233 29 0 29 chr12 11691008 11691043 -132591446 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 14537 176 13 19 chr12 11691043 11693308 -132589181 + L1MA2 LINE L1 4929 7174 -549 2276 80 0 7 chr12 11693308 11693609 -132588880 + AluSc SINE Alu 1 299 -10 14537 176 13 19 chr12 11693609 11694157 -132588332 + L1MA2 LINE L1 7174 7723 0 1541 254 51 18 chr12 11694882 11695334 -132587155 - L1ME LINE L1 -5598 472 6 219 271 0 0 chr12 11696648 11696696 -132585793 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 240 288 25 12 chr12 11697442 11697522 -132584967 - L1ME3 LINE L1 -81 6081 6001 781 277 81 6 chr12 11697629 11697961 -132584528 - L1ME3 LINE L1 -214 5956 5600 274 243 134 50 chr12 11698192 11698431 -132584058 - L1MEd LINE L1 -4944 1175 917 2088 126 0 0 chr12 11699430 11699723 -132582766 - AluSq SINE Alu -19 294 2 26 30 0 0 chr12 11700467 11700500 -132581989 + AT_rich Low_complexity Low_complexity 1 33 0 473 233 22 16 chr12 11701027 11701184 -132581305 - L1ME3A LINE L1 -338 5832 5678 198 118 0 0 chr12 11702192 11702226 -132580263 + (CA)n Simple_repeat Simple_repeat 2 35 0 2506 48 0 16 chr12 11702411 11702726 -132579763 + AluY SINE Alu 1 310 -1 312 233 116 79 chr12 11702924 11703062 -132579427 + MIR SINE MIR 5 153 -109 1952 136 3 3 chr12 11703062 11703357 -132579132 + AluSx SINE Alu 4 298 -14 312 233 116 79 chr12 11703357 11703407 -132579082 + MIR SINE MIR 153 200 -62 1603 184 31 3 chr12 11703523 11703811 -132578678 - AluJo SINE Alu -16 296 1 1376 334 56 46 chr12 11703908 11704467 -132578022 + HERVL LTR ERVL 2132 2709 -2945 1574 194 0 0 chr12 11704467 11704751 -132577738 + AluJb SINE Alu 3 286 -26 1376 334 56 46 chr12 11704751 11705261 -132577228 + HERVL LTR ERVL 2709 3212 -2442 315 308 45 38 chr12 11706483 11706616 -132575873 - L2 LINE L2 0 3313 3180 207 100 0 0 chr12 11707720 11707750 -132574739 + (CA)n Simple_repeat Simple_repeat 1 30 0 32 0 0 0 chr12 11709697 11709729 -132572760 + AT_rich Low_complexity Low_complexity 1 32 0 604 293 102 3 chr12 11710719 11711033 -132571456 - L1ME3A LINE L1 -208 5962 5618 637 218 78 0 chr12 11711281 11711423 -132571066 + AluJo SINE Alu 1 153 -159 1718 180 3 3 chr12 11713293 11713587 -132568902 + AluJb SINE Alu 1 294 -18 310 194 32 32 chr12 11714123 11714151 -132568338 - L1M4 LINE L1 -324 5854 5827 461 289 164 21 chr12 11714151 11714438 -132568051 - L1ME3A LINE L1 -344 6621 6294 27 49 0 0 chr12 11714597 11714638 -132567851 + AT_rich Low_complexity Low_complexity 1 41 0 207 167 0 0 chr12 11715576 11715612 -132566877 + (CA)n Simple_repeat Simple_repeat 2 37 0 385 316 53 38 chr12 11716016 11716225 -132566264 + MIR SINE MIR 1 212 -50 1588 185 3 18 chr12 11716343 11716629 -132565860 - AluJo SINE Alu -30 282 1 822 283 18 9 chr12 11716819 11717158 -132565331 + L1M4 LINE L1 4576 4917 -1229 5380 138 71 10 chr12 11717170 11718364 -132564125 + L1M1 LINE L1 2664 3920 -3645 3451 225 103 13 chr12 11718406 11719627 -132562862 - L1PBa LINE L1 -5381 1482 8 1999 160 0 10 chr12 11719695 11720008 -132562481 - AluSx SINE Alu 0 312 3 444 327 81 35 chr12 11721119 11721720 -132560769 - L1ME3A LINE L1 -1014 5927 5149 1688 168 11 3 chr12 11721720 11722005 -132560484 - AluJb SINE Alu -25 287 1 444 327 81 35 chr12 11722005 11722308 -132560181 - L1ME3A LINE L1 -1792 5149 4861 13055 28 2 0 chr12 11722308 11723872 -132558617 - L1PA3 LINE L1 -1495 4651 3085 7586 33 0 0 chr12 11723872 11725352 -132557137 + L1PA3 LINE L1 4676 6155 0 303 340 75 0 chr12 11726262 11726462 -132556027 - L1ME3A LINE L1 -2157 4784 4570 1531 15 0 46 chr12 11726597 11726793 -132555696 - L1PA4 LINE L1 -1 6154 5968 872 318 65 42 chr12 11727476 11728438 -132554051 + ERVL LTR ERVL 70 1128 -4636 23 33 0 0 chr12 11728537 11728567 -132553922 + AT_rich Low_complexity Low_complexity 1 30 0 2196 189 169 38 chr12 11728795 11729488 -132553001 - LTR48 LTR ERV1 -3 784 1 701 286 58 7 chr12 11730093 11730387 -132552102 - L1ME3A LINE L1 -224 5946 5638 358 290 128 40 chr12 11730705 11731153 -132551336 - L1MEd LINE L1 -4796 2147 1679 2176 73 0 4 chr12 11731374 11731648 -132550841 - AluY SINE Alu -14 297 25 201 147 0 0 chr12 11732335 11732369 -132550120 + (ATGGTG)n Simple_repeat Simple_repeat 5 38 0 1984 117 0 14 chr12 11734980 11735291 -132547198 - AluSg SINE Alu 0 307 1 831 273 114 17 chr12 11735490 11735842 -132546647 + MLT1J1 LTR MaLR 40 425 -21 592 210 49 0 chr12 11737129 11737272 -132545217 + MLT1J2 LTR MaLR 1 150 -300 446 236 50 29 chr12 11737435 11737575 -132544914 + L1MC4a LINE L1 5787 5929 -1879 466 92 0 15 chr12 11737616 11737681 -132544808 + U6 snRNA snRNA 1 64 -43 311 291 108 27 chr12 11737760 11737908 -132544581 + L1MC4a LINE L1 6075 6234 -1574 280 280 103 0 chr12 11738191 11738298 -132544191 - LTR67 LTR ERVL -34 523 406 1891 185 29 43 chr12 11738587 11739042 -132543447 + MLT2B2 LTR ERVL 1 414 0 315 128 135 74 chr12 11739277 11739292 -132543197 - L1MA10 LINE L1 0 6334 6320 1031 194 148 27 chr12 11739292 11739808 -132542681 - L1ME1 LINE L1 -5 6161 5467 537 307 45 14 chr12 11739827 11740114 -132542375 - L1MEd LINE L1 -5240 1701 1406 601 281 107 20 chr12 11740185 11740575 -132541914 - L1MEd LINE L1 -5143 1280 818 1760 222 90 13 chr12 11741222 11741691 -132540798 - MLT1D LTR MaLR 0 505 1 1289 274 73 12 chr12 11741694 11741973 -132540516 - L1MEd LINE L1 -5958 465 150 2153 77 0 7 chr12 11741973 11742247 -132540242 - AluY SINE Alu -13 298 27 1289 274 73 12 chr12 11742247 11742390 -132540099 - L1MEd LINE L1 -6273 150 17 902 81 17 23 chr12 11742718 11742890 -132539599 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 2527 33 0 7 chr12 11744690 11744992 -132537497 + AluY SINE Alu 1 300 -11 228 298 138 0 chr12 11745390 11745484 -132537005 + MIR SINE MIR 37 143 -119 620 233 75 63 chr12 11747038 11747356 -132535133 + HAL1 LINE L1 1912 2233 -274 192 356 11 23 chr12 11747750 11747837 -132534652 + L2 LINE L2 2998 3083 -189 299 181 0 35 chr12 11748296 11748412 -132534077 + (TA)n Simple_repeat Simple_repeat 1 112 0 195 42 0 0 chr12 11748462 11748486 -132534003 + (TA)n Simple_repeat Simple_repeat 2 25 0 408 214 92 23 chr12 11748664 11748795 -132533694 + L2 LINE L2 3174 3313 0 435 284 77 0 chr12 11749190 11749345 -132533144 - MIR SINE MIR -10 252 86 2105 176 26 3 chr12 11750132 11750484 -132532005 + MLT1A1 LTR MaLR 1 360 -5 454 118 0 0 chr12 11750992 11751060 -132531429 + AluJ/FRAM SINE Alu 228 295 -17 2200 104 0 7 chr12 11752439 11752727 -132529762 + AluSp SINE Alu 3 288 -25 419 120 37 37 chr12 11752732 11752840 -132529649 + GA-rich Low_complexity Low_complexity 3 110 0 206 219 0 0 chr12 11754134 11754175 -132528314 + GA-rich Low_complexity Low_complexity 2 42 0 515 179 0 54 chr12 11756016 11756128 -132526361 - MER5B DNA MER1_type 0 178 73 271 273 10 50 chr12 11756342 11756441 -132526048 + L2 LINE L2 3215 3309 -4 862 65 36 50 chr12 11757137 11757276 -132525213 + L1PA13 LINE L1 6027 6163 0 2303 97 3 10 chr12 11757904 11758212 -132524277 + AluSx SINE Alu 1 306 -6 2280 117 7 0 chr12 11759685 11759993 -132522496 + AluSx SINE Alu 1 310 -2 24 53 0 0 chr12 11760161 11760199 -132522290 + AT_rich Low_complexity Low_complexity 1 38 0 295 216 10 10 chr12 11762771 11762868 -132519621 + GA-rich Low_complexity Low_complexity 4 100 0 481 306 165 65 chr12 11762912 11763573 -132518916 - L2 LINE L2 -695 2619 1893 460 294 110 16 chr12 11763622 11763877 -132518612 + L1M4 LINE L1 3834 4112 -2034 694 149 0 0 chr12 11763936 11764043 -132518446 + AluJb SINE Alu 1 107 -205 307 298 71 94 chr12 11764728 11764983 -132517506 - L3 LINE CR1 -1024 553 305 1577 199 94 0 chr12 11765137 11765499 -132516990 - MSTD LTR MaLR 0 396 1 2456 218 47 10 chr12 11765499 11766014 -132516475 - MSTD-int LTR MaLR 0 1735 1202 2662 239 34 32 chr12 11766019 11766747 -132515742 - MSTD-int LTR MaLR -907 828 99 1842 189 45 8 chr12 11766761 11767143 -132515346 - MSTD LTR MaLR 0 396 1 5422 109 6 1 chr12 11767271 11768053 -132514436 + L1PA13 LINE L1 5354 6139 -24 626 137 20 0 chr12 11768053 11768155 -132514334 + MLT2B1 LTR ERVL 59 162 -358 261 333 21 0 chr12 11768907 11769003 -132513486 - MIR SINE MIR -15 247 150 1524 178 30 7 chr12 11769352 11769621 -132512868 - AluJo SINE Alu -26 286 12 21 57 0 0 chr12 11770331 11770366 -132512123 + AT_rich Low_complexity Low_complexity 1 35 0 327 348 30 6 chr12 11770494 11770658 -132511831 - HAL1 LINE L1 -815 1692 1525 1946 125 38 0 chr12 11771674 11771961 -132510528 - AluSx SINE Alu -14 298 1 351 344 78 13 chr12 11772812 11772966 -132509523 - MER97c DNA MER1_type? -913 177 14 622 253 41 0 chr12 11773146 11773292 -132509197 - MIR SINE MIR 0 262 111 802 217 7 0 chr12 11773488 11773640 -132508849 + AluJo SINE Alu 3 155 -157 1624 128 157 20 chr12 11773640 11773945 -132508544 - MSTA LTR MaLR 0 428 82 957 245 82 35 chr12 11773960 11774327 -132508162 + L2 LINE L2 2582 2965 -349 2057 147 0 0 chr12 11774710 11775017 -132507472 + AluSx SINE Alu 1 307 -5 368 325 55 48 chr12 11775312 11775583 -132506906 - L2 LINE L2 -9 3304 3032 446 151 55 97 chr12 11775587 11775722 -132506767 - MLT1H LTR MaLR 0 549 445 348 157 0 14 chr12 11775977 11776047 -132506442 - MLT1D LTR MaLR 0 505 437 783 139 64 30 chr12 11776048 11776407 -132506082 + L1MB3 LINE L1 4504 5495 -685 428 181 0 11 chr12 11776412 11776506 -132505983 + GA-rich Low_complexity Low_complexity 3 95 0 2468 167 36 9 chr12 11776520 11777039 -132505450 + LTR27 LTR ERV1 2 501 0 639 39 0 0 chr12 11777039 11777117 -132505372 + (GGAA)n Simple_repeat Simple_repeat 2 79 0 2734 162 40 12 chr12 11777117 11777611 -132504878 + L1MB3 LINE L1 5496 6003 -180 346 288 23 45 chr12 11777767 11777899 -132504590 + MER5A DNA MER1_type 43 171 -18 2917 236 89 47 chr12 11778245 11778428 -132504061 + L1MC4a LINE L1 5365 5539 -2269 2016 154 75 44 chr12 11778428 11778909 -132503580 - LTR54B LTR ERV1 -2 496 1 2917 236 89 47 chr12 11778909 11779332 -132503157 + L1MC4a LINE L1 5539 5943 -1865 1941 172 7 0 chr12 11779332 11779640 -132502849 + AluSg SINE Alu 1 310 0 2917 236 89 47 chr12 11779640 11780078 -132502411 + L1MC4a LINE L1 5943 6454 -1354 2014 176 176 5 chr12 11780116 11780543 -132501946 - MER21B LTR ERV1 -363 500 1 428 181 14 0 chr12 11780565 11780637 -132501852 - MER2 DNA MER2_type -272 73 1 4309 217 80 55 chr12 11780637 11780735 -132501754 + L1MC4 LINE L1 6475 6569 -1473 1780 140 117 26 chr12 11780735 11781077 -132501412 - THE1C LTR MaLR -2 373 1 4309 217 80 55 chr12 11781077 11781943 -132500546 + L1MC4 LINE L1 6569 7412 -630 231 36 0 0 chr12 11781943 11781971 -132500518 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 4309 217 80 55 chr12 11781971 11782397 -132500092 + L1MC4 LINE L1 7412 7910 -132 210 71 0 0 chr12 11782397 11782425 -132500064 + (TG)n Simple_repeat Simple_repeat 1 28 0 4309 217 80 55 chr12 11782425 11782562 -132499927 + L1MC4 LINE L1 7910 8042 0 678 223 22 112 chr12 11783279 11783405 -132499084 - MIR SINE MIR 0 262 171 2135 110 0 17 chr12 11783405 11783706 -132498783 + AluSq SINE Alu 1 296 -17 678 223 22 112 chr12 11783706 11783848 -132498641 - MIR SINE MIR -91 171 18 5274 149 18 2 chr12 11785257 11786110 -132496379 + L1MC1 LINE L1 5459 6324 -9 3169 183 8 13 chr12 11786129 11786746 -132495743 + L1MC3 LINE L1 5320 5933 -1852 1268 107 0 6 chr12 11786749 11786927 -132495562 - L1MC/D LINE L1 -699 5634 5458 1058 177 57 34 chr12 11787027 11787292 -132495197 + L1MC3 LINE L1 5942 6212 -1573 191 61 30 0 chr12 11787304 11787337 -132495152 + (TTTTTA)n Simple_repeat Simple_repeat 1 34 0 7690 21 3 0 chr12 11787339 11788861 -132493628 - L1PA3 LINE L1 -4 6151 4628 2055 28 0 0 chr12 11788861 11789111 -132493378 + L1P LINE L1 4311 4560 -1586 * 2895 181 79 28 chr12 11789098 11789734 -132492755 + L1MC3 LINE L1 6194 6861 -924 2921 199 88 22 chr12 11789748 11790442 -132492047 + L1MC3 LINE L1 7046 7785 0 1274 161 4 12 chr12 11791760 11792002 -132490487 + L1MA9 LINE L1 6071 6310 -2 25 83 0 0 chr12 11792002 11792062 -132490427 + AT_rich Low_complexity Low_complexity 1 60 0 1478 150 73 7 chr12 11792281 11792567 -132489922 - LTR19A LTR ERV1 -181 305 1 13979 162 41 44 chr12 11792951 11798057 -132484432 + L1PB1 LINE L1 1423 6506 -361 234 217 0 48 chr12 11798074 11798157 -132484332 - L1MCa LINE L1 -4357 2069 1991 2516 110 0 5 chr12 11798170 11798542 -132483947 + L1PB1 LINE L1 6497 6866 -1 205 269 97 0 chr12 11800731 11800824 -132481665 - L3 LINE CR1 -820 757 656 719 211 68 73 chr12 11801260 11801554 -132480935 + L1MC4 LINE L1 7755 8037 -5 521 280 8 0 chr12 11801554 11801679 -132480810 + MER5B DNA MER1_type 51 176 -2 288 259 120 57 chr12 11801989 11802147 -132480342 - MLT1K LTR MaLR -9 579 412 1687 245 52 40 chr12 11803006 11803562 -132478927 - MLT1F1 LTR MaLR -4 563 1 3013 121 32 2 chr12 11805153 11805623 -132476866 - L1MA5A LINE L1 -181 6116 5633 562 192 13 46 chr12 11806213 11806364 -132476125 + L1MA10 LINE L1 6189 6334 0 279 229 34 51 chr12 11807204 11807322 -132475167 + L1MC5 LINE L1 7326 7441 -520 475 268 0 49 chr12 11807410 11807574 -132474915 - MER69A DNA AcHobo -1 176 21 2072 171 84 0 chr12 11808253 11808646 -132473843 - MSTB LTR MaLR 0 426 1 388 296 80 0 chr12 11808701 11808826 -132473663 + HAL1 LINE L1 10 144 -2363 294 385 17 6 chr12 11809039 11809218 -132473271 + MIR SINE MIR 78 258 -4 377 149 0 15 chr12 11809404 11809471 -132473018 - AluSx SINE Alu -2 300 235 1409 88 0 6 chr12 11809471 11809652 -132472837 - AluSx SINE Alu -132 180 1 1910 158 0 0 chr12 11809968 11810266 -132472223 + AluJb SINE Alu 1 298 -14 229 266 73 64 chr12 11810497 11810606 -132471883 + MIR SINE MIR 115 224 -38 611 348 80 6 chr12 11811076 11811438 -132471051 - L2 LINE L2 -526 2788 2400 556 224 72 0 chr12 11811447 11811599 -132470890 + MLT1B LTR MaLR 1 163 -227 201 121 0 0 chr12 11811641 11811674 -132470815 + (TTC)n Simple_repeat Simple_repeat 3 35 0 296 226 19 9 chr12 11811715 11811727 -132470762 - L1MA4A LINE L1 -8 6295 6284 3246 219 18 28 chr12 11811727 11811835 -132470654 - L1PB4 LINE L1 -3 6153 6046 3234 190 25 31 chr12 11811835 11812214 -132470275 - L1MA4A LINE L1 -262 6041 5662 2052 25 0 4 chr12 11812214 11812450 -132470039 - AluYa5 SINE Alu -1 310 76 3234 190 25 31 chr12 11812450 11813017 -132469472 - L1MA4A LINE L1 -641 5662 5099 349 275 0 0 chr12 11813324 11813415 -132469074 + Zaphod DNA AcHobo 3940 4030 -1 251 293 41 0 chr12 11813427 11813550 -132468939 - HAL1 LINE L1 -1160 1347 1220 285 264 118 27 chr12 11813575 11813904 -132468585 - HAL1 LINE L1 -1339 1168 810 623 349 82 11 chr12 11815107 11815462 -132467027 - L2 LINE L2 -535 2779 2400 1350 217 18 53 chr12 11815471 11815867 -132466622 + MLT1B LTR MaLR 1 382 -8 5129 197 16 4 chr12 11816672 11817777 -132464712 + HSMAR2 DNA Mariner 5 1123 -179 1414 225 7 10 chr12 11818497 11818799 -132463690 - AluJo SINE Alu -1 301 1 271 300 77 65 chr12 11818918 11819165 -132463324 + HERVL40 LTR ERVL 1368 1617 -3913 1621 259 43 49 chr12 11819285 11820214 -132462275 + L1MDb LINE L1 938 1858 -4548 2388 77 0 0 chr12 11820214 11820512 -132461977 + AluY SINE Alu 1 298 -13 1621 259 43 49 chr12 11820512 11820588 -132461901 + L1MDb LINE L1 1858 1933 -4473 1046 205 101 11 chr12 11820831 11821207 -132461282 + L1MDb LINE L1 2011 2420 -3986 720 221 248 45 chr12 11821410 11821618 -132460871 + MLT1D LTR MaLR 1 166 -339 299 25 25 0 chr12 11821618 11821658 -132460831 + (ATGTG)n Simple_repeat Simple_repeat 3 43 0 720 221 248 45 chr12 11821658 11821869 -132460620 + MLT1D LTR MaLR 166 505 0 341 200 15 0 chr12 11823807 11823872 -132458617 - MER69A DNA AcHobo -97 80 15 369 287 49 0 chr12 11824530 11824652 -132457837 + HAL1 LINE L1 23 150 -2357 367 155 113 10 chr12 11825274 11825371 -132457118 - L1MA7 LINE L1 -45 6246 6140 4806 80 1 53 chr12 11825373 11826089 -132456400 - L1PA8 LINE L1 -2 6170 5492 327 188 14 0 chr12 11826089 11826158 -132456331 - L1P LINE L1 -1570 4576 4507 1244 87 22 0 chr12 11826181 11826365 -132456124 + L1PA13 LINE L1 5971 6158 -5 484 191 65 10 chr12 11826384 11826583 -132455906 + L1 LINE L1 4233 4442 -1704 204 354 62 8 chr12 11826584 11826714 -132455775 + MIR SINE MIR 72 208 -54 890 247 75 11 chr12 11826903 11827170 -132455319 - MLT1G1 LTR MaLR -311 284 1 1541 216 10 8 chr12 11827755 11828154 -132454335 + L1M2 LINE L1 2097 2496 -4353 750 235 87 69 chr12 11828626 11829004 -132453485 - MLT1B LTR MaLR -5 385 1 474 320 90 20 chr12 11829051 11829351 -132453138 + L2 LINE L2 2444 2764 -550 375 250 190 43 chr12 11829855 11830039 -132452450 - MIR SINE MIR -49 213 3 27847 129 15 64 chr12 11830810 11836572 -132445917 + L1PA8 LINE L1 25 5491 -681 1795 155 31 7 chr12 11836572 11836863 -132445626 + AluSq SINE Alu 1 298 -15 1276 118 0 16 chr12 11836865 11837040 -132445449 + AluSc SINE Alu 126 299 -10 5187 82 0 0 chr12 11837040 11837733 -132444756 + L1PA8 LINE L1 5478 6170 -2 2622 236 27 7 chr12 11837743 11838451 -132444038 + L1PB4 LINE L1 5432 6153 -3 201 338 183 43 chr12 11838507 11838971 -132443518 - L2 LINE L2 -411 2903 2375 851 321 93 21 chr12 11838980 11839646 -132442843 - L2 LINE L2 -1242 2072 1359 310 298 32 0 chr12 11839740 11839834 -132442655 - MIR SINE MIR -93 169 73 1700 192 3 3 chr12 11840200 11840497 -132441992 + AluSx SINE Alu 1 297 -15 319 234 27 120 chr12 11841091 11841275 -132441214 + L1ME LINE L1 5711 5801 -320 319 325 32 45 chr12 11841739 11841893 -132440596 + MER5A DNA MER1_type 33 184 -5 180 370 34 63 chr12 11843942 11844293 -132438196 + L2 LINE L2 2519 2859 -455 298 216 0 27 chr12 11846782 11846856 -132435633 - MLT1B LTR MaLR -318 72 1 224 333 64 18 chr12 11846906 11847077 -132435412 + L2 LINE L2 2481 2659 -655 266 94 57 0 chr12 11847278 11847331 -132435158 + (TTATA)n Simple_repeat Simple_repeat 5 60 0 259 279 188 48 chr12 11847481 11847646 -132434843 - MIR SINE MIR -73 189 2 931 239 80 0 chr12 11848598 11848861 -132433628 + MLT1G1 LTR MaLR 1 284 -311 206 411 33 0 chr12 11849008 11849188 -132433301 - MIR SINE MIR -10 252 67 297 68 0 0 chr12 11849204 11849248 -132433241 + (GA)n Simple_repeat Simple_repeat 1 44 0 2563 45 0 0 chr12 11849384 11849694 -132432795 + L1PA5 LINE L1 5836 6145 -9 28 0 0 0 chr12 11849695 11849723 -132432766 + AT_rich Low_complexity Low_complexity 1 28 0 233 106 0 21 chr12 11849797 11849844 -132432645 + (GA)n Simple_repeat Simple_repeat 1 46 0 246 265 43 74 chr12 11850089 11850251 -132432238 - HAL1 LINE L1 -2328 179 23 293 246 0 0 chr12 11850905 11850966 -132431523 + MER69 DNA AcHobo 20 80 -97 225 213 138 0 chr12 11851519 11851613 -132430876 - L1MDa LINE L1 -4285 2255 2149 496 211 23 16 chr12 11851613 11851741 -132430748 - MLT1D LTR MaLR -56 449 321 1389 291 39 45 chr12 11851806 11852822 -132429667 - L1MDa LINE L1 -4411 2129 1120 1291 231 7 21 chr12 11853384 11853708 -132428781 + AluJo SINE Alu 3 322 0 296 316 38 19 chr12 11854256 11854414 -132428075 - HERVL40 LTR ERVL -5261 269 109 4754 193 23 28 chr12 11854416 11855540 -132426949 - HSMAR2 DNA Mariner -179 1123 5 240 289 31 10 chr12 11856249 11856346 -132426143 + L2 LINE L2 2307 2405 -909 791 265 6 74 chr12 11856349 11856700 -132425789 - MLT1B LTR MaLR -17 373 47 1098 231 10 70 chr12 11857125 11857349 -132425140 - AluJo SINE Alu -9 293 92 2477 65 7 10 chr12 11857349 11857657 -132424832 - AluY SINE Alu -4 307 1 1098 231 10 70 chr12 11857657 11857744 -132424745 - AluJo SINE Alu -210 92 1 1045 205 34 24 chr12 11858502 11858799 -132423690 - HSMAR2 DNA Mariner -2 1300 1001 1660 117 10 67 chr12 11858821 11859121 -132423368 - L1PB1 LINE L1 -3 6148 5866 942 163 17 0 chr12 11859121 11859293 -132423196 + HSMAR2 DNA Mariner 845 1019 -283 3771 190 26 32 chr12 11859301 11860208 -132422281 - HSMAR2 DNA Mariner -398 904 3 3088 74 0 0 chr12 11860979 11861383 -132421106 + L1PA6 LINE L1 5732 6135 -19 198 71 0 0 chr12 11861386 11861414 -132421075 + (TAAAA)n Simple_repeat Simple_repeat 4 31 0 12444 100 7 1 chr12 11861414 11863340 -132419149 + L1PA8 LINE L1 3051 4988 -1158 2483 40 15 0 chr12 11863344 11863669 -132418820 - L1P2 LINE L1 -1692 4454 4125 * 6617 55 3 13 chr12 11863668 11864992 -132417497 + L1P2 LINE L1 4474 5781 -373 41196 47 4 2 chr12 11864999 11871124 -132411365 + L1PA4 LINE L1 7 6145 -10 2462 94 10 0 chr12 11871129 11871634 -132410855 + L1PA8 LINE L1 4982 5491 -663 1799 144 35 3 chr12 11871634 11871918 -132410571 + AluSq SINE Alu 1 293 -20 1229 134 0 0 chr12 11871931 11872110 -132410379 + AluSg/x SINE Alu 127 305 -7 2173 77 3 0 chr12 11872110 11872410 -132410079 + L1PA8 LINE L1 5481 5781 -391 40916 33 21 1 chr12 11872419 11878448 -132404041 + L1PA2 LINE L1 2 6155 0 3047 72 0 0 chr12 11878469 11878871 -132403618 + L1PA8 LINE L1 5769 6170 -2 2546 241 17 17 chr12 11878877 11879602 -132402887 + L1PB4 LINE L1 5428 6152 -4 269 323 58 53 chr12 11879904 11880130 -132402359 - L2 LINE L2 -713 2601 2375 768 343 78 15 chr12 11880139 11880731 -132401758 - L2 LINE L2 -1242 2072 1444 278 306 91 0 chr12 11880873 11880994 -132401495 - MIR SINE MIR -58 204 73 1855 171 0 0 chr12 11881360 11881659 -132400830 + AluSx SINE Alu 1 299 -13 321 327 16 0 chr12 11882092 11882279 -132400210 + L1MC/D LINE L1 5668 5859 -316 21 36 0 0 chr12 11882292 11882320 -132400169 + AT_rich Low_complexity Low_complexity 1 28 0 302 327 39 46 chr12 11882787 11882940 -132399549 + MER5A DNA MER1_type 33 184 -5 196 339 78 43 chr12 11884745 11884975 -132397514 + L2 LINE L2 2587 2824 -490 289 216 0 27 chr12 11887352 11887426 -132395063 - MLT1B LTR MaLR -318 72 1 432 361 30 23 chr12 11887470 11887772 -132394717 + L2 LINE L2 2481 2784 -530 365 247 202 51 chr12 11888096 11888274 -132394215 - MIR SINE MIR -56 206 2 859 257 82 0 chr12 11889211 11889468 -132393021 + MLT1G1 LTR MaLR 7 284 -311 779 42 0 0 chr12 11889506 11889602 -132392887 + L1PA4 LINE L1 1 96 -6050 36729 42 1 1 chr12 11889602 11895137 -132387352 + L1PA4 LINE L1 623 6154 -1 240 276 60 85 chr12 11895690 11895889 -132386600 - HAL1 LINE L1 -2295 212 19 288 246 43 0 chr12 11896532 11896601 -132385888 + MER69 DNA AcHobo 9 80 -97 262 227 67 50 chr12 11897765 11897884 -132384605 - HERVL40 LTR ERVL -5301 229 109 4229 212 28 25 chr12 11897886 11898965 -132383524 - HSMAR2 DNA Mariner -179 1123 42 2058 113 37 7 chr12 11898966 11899266 -132383223 - AluY SINE Alu -2 309 1 192 229 48 48 chr12 11900040 11900123 -132382366 + L2 LINE L2 2308 2390 -924 697 246 13 104 chr12 11900123 11900502 -132381987 - MLT1B LTR MaLR 0 396 47 1200 236 0 45 chr12 11900928 11901237 -132381252 - AluJo SINE Alu -7 295 1 1386 189 17 0 chr12 11901993 11902290 -132380199 - HSMAR2 DNA Mariner 0 1302 1001 1831 121 11 4 chr12 11902306 11902587 -132379902 - L1PB1 LINE L1 -3 6148 5866 767 170 27 0 chr12 11902599 11902746 -132379743 + HSMAR2 DNA Mariner 869 1019 -283 3508 200 30 31 chr12 11902760 11903657 -132378832 - HSMAR2 DNA Mariner -404 898 3 222 244 37 12 chr12 11904396 11904478 -132378011 + L2 LINE L2 2307 2390 -924 573 261 23 11 chr12 11904483 11904659 -132377830 - MLT1B LTR MaLR -5 385 208 383 271 64 20 chr12 11904693 11904896 -132377593 - L1ME LINE L1 -5160 910 699 257 183 14 84 chr12 11905032 11905103 -132377386 - HERVL40 LTR ERVL -3404 2126 2061 222 220 0 34 chr12 11905614 11905673 -132376816 + L2 LINE L2 2334 2390 -924 650 250 8 108 chr12 11905690 11906042 -132376447 - MLT1B LTR MaLR -17 373 57 252 253 0 0 chr12 11906488 11906563 -132375926 + (TA)n Simple_repeat Simple_repeat 1 75 0 249 132 57 0 chr12 11906567 11906620 -132375869 - L1MCa LINE L1 -4365 2061 2006 246 239 0 0 chr12 11906620 11906691 -132375798 + (TA)n Simple_repeat Simple_repeat 2 72 0 381 93 0 0 chr12 11906696 11906750 -132375739 + (CA)n Simple_repeat Simple_repeat 1 54 0 1076 212 3 57 chr12 11906750 11907033 -132375456 - AluJo SINE Alu -36 276 9 1138 223 7 10 chr12 11907785 11908086 -132374403 - HSMAR2 DNA Mariner -2 1300 1001 1717 126 11 4 chr12 11908107 11908385 -132374104 - L1PB1 LINE L1 -1 6150 5871 878 144 0 0 chr12 11908419 11908558 -132373931 + HSMAR2 DNA Mariner 881 1019 -283 2375 179 26 43 chr12 11908566 11909148 -132373341 - HSMAR2 DNA Mariner -398 904 333 31515 80 6 9 chr12 11909176 11915311 -132367178 - L1PA5 LINE L1 -3 6151 11 1386 207 45 6 chr12 11915318 11915652 -132366837 - HSMAR2 DNA Mariner -953 349 3 187 297 33 11 chr12 11916372 11916463 -132366026 + L2 LINE L2 2298 2390 -924 1198 253 15 52 chr12 11916468 11916868 -132365621 - MLT1B LTR MaLR -5 385 1 394 322 82 46 chr12 11916912 11917241 -132365248 + L2 LINE L2 2444 2784 -530 294 247 199 60 chr12 11917709 11917875 -132364614 - MIR SINE MIR -72 190 2 1848 152 20 0 chr12 11918132 11918435 -132364054 - AluSg SINE Alu -1 309 1 4882 199 39 13 chr12 11918722 11919813 -132362676 + HSMAR2 DNA Mariner 5 1123 -179 1282 248 7 10 chr12 11920524 11920831 -132361658 - AluJo SINE Alu -6 306 1 293 296 86 66 chr12 11920952 11921195 -132361294 + HERVL40 LTR ERVL 1370 1617 -3913 292 208 52 39 chr12 11921194 11921271 -132361218 + HERVL40 LTR ERVL 2050 2127 -3403 * 1848 263 68 52 chr12 11921327 11922379 -132360110 + L1MDa LINE L1 1061 2129 -4411 412 268 31 8 chr12 11922444 11922571 -132359918 + MLT1D LTR MaLR 320 449 -56 1049 207 108 16 chr12 11922571 11922943 -132359546 + L1MDa LINE L1 2149 2554 -3986 699 200 119 117 chr12 11923146 11923650 -132358839 + MLT1D LTR MaLR 1 505 0 4097 202 18 8 chr12 11924132 11925004 -132357485 - HSMAR2 DNA Mariner -417 885 5 469 383 70 11 chr12 11925079 11925547 -132356942 - L2 LINE L2 -1453 1861 1366 405 287 84 40 chr12 11925588 11925790 -132356699 - MIR SINE MIR -34 228 18 1742 171 0 0 chr12 11926101 11926382 -132356107 + AluSx SINE Alu 1 281 -31 358 316 7 3 chr12 11926944 11927112 -132355377 + L1ME LINE L1 5668 5833 -316 219 357 32 45 chr12 11927638 11927792 -132354697 + MER5A DNA MER1_type 33 184 -5 293 230 0 27 chr12 11932681 11932755 -132349734 - MLT1B LTR MaLR -318 72 1 330 317 53 46 chr12 11932799 11933007 -132349482 + L2 LINE L2 2481 2693 -621 6637 35 1 0 chr12 11933007 11933804 -132348685 + L1PA4 LINE L1 5355 6152 -3 330 317 53 46 chr12 11933804 11933857 -132348632 + L2 LINE L2 2693 2744 -570 325 269 200 29 chr12 11934223 11934398 -132348091 - MIR SINE MIR -56 206 2 911 274 73 0 chr12 11935314 11935573 -132346916 + MLT1G1 LTR MaLR 7 284 -311 204 111 0 0 chr12 11935912 11935948 -132346541 + (GA)n Simple_repeat Simple_repeat 1 36 0 252 287 46 98 chr12 11936200 11936374 -132346115 - HAL1 LINE L1 -2324 183 19 351 217 43 0 chr12 11937015 11937084 -132345405 + MER69 DNA AcHobo 9 80 -97 402 269 25 8 chr12 11938252 11938371 -132344118 - HERVL40 LTR ERVL -5301 229 109 4547 202 37 26 chr12 11938373 11939443 -132343046 - HSMAR2 DNA Mariner -179 1123 42 2129 90 35 39 chr12 11939444 11939756 -132342733 - AluY SINE Alu 0 311 1 270 247 41 31 chr12 11940532 11940629 -132341860 + L2 LINE L2 2307 2404 -910 657 229 30 116 chr12 11940629 11940991 -132341498 - MLT1B LTR MaLR -13 377 47 1125 234 0 64 chr12 11941419 11941731 -132340758 - AluJo SINE Alu -10 292 1 1344 205 31 0 chr12 11942483 11942776 -132339713 - HSMAR2 DNA Mariner 0 1302 1001 1908 107 11 4 chr12 11942792 11943073 -132339416 - L1PB1 LINE L1 -3 6148 5866 831 175 54 0 chr12 11943073 11943239 -132339250 + HSMAR2 DNA Mariner 845 1019 -283 3601 201 32 41 chr12 11943247 11944157 -132338332 - HSMAR2 DNA Mariner -398 904 3 212 305 24 0 chr12 11944889 11944971 -132337518 + L2 LINE L2 2307 2390 -924 618 231 7 14 chr12 11944976 11945123 -132337366 - MLT1B LTR MaLR -5 385 240 301 262 77 52 chr12 11945202 11945492 -132336997 - L1MDb LINE L1 -5175 1221 934 323 250 13 0 chr12 11945527 11945603 -132336886 - HERVL40 LTR ERVL -3403 2127 2051 1258 245 3 17 chr12 11945966 11946293 -132336196 + AluJo SINE Alu 3 325 0 419 370 54 33 chr12 11946436 11946771 -132335718 - HERVL40 LTR ERVL -4123 1407 1066 411 333 19 6 chr12 11946853 11947012 -132335477 - HERVL40 LTR ERVL -5261 269 109 4772 203 27 29 chr12 11947014 11947115 -132335374 - HSMAR2 DNA Mariner -179 1123 1023 5339 111 5 68 chr12 11947115 11947997 -132334492 - LTR12 LTR ERV1 0 826 1 4772 203 27 29 chr12 11947997 11949016 -132333473 - HSMAR2 DNA Mariner -279 1023 5 752 236 14 106 chr12 11949849 11950209 -132332280 - MLT1B LTR MaLR -18 372 46 963 226 0 66 chr12 11950655 11950942 -132331547 - AluJo SINE Alu -33 279 12 1029 198 23 12 chr12 11951702 11951960 -132330529 - HSMAR2 DNA Mariner -2 1300 1040 1395 101 0 0 chr12 11951960 11952149 -132330340 + L1P LINE L1 31 219 -5927 263 280 51 0 chr12 11953526 11953622 -132328867 + L1ME LINE L1 5469 5571 -599 439 324 108 47 chr12 11954734 11955114 -132327375 + L1ME3 LINE L1 1271 1673 -4723 612 288 97 7 chr12 11955338 11955647 -132326842 + L1ME3 LINE L1 5689 6025 -206 25 0 0 0 chr12 11955899 11955924 -132326565 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr12 11956706 11956740 -132325749 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr12 11956864 11956899 -132325590 + AT_rich Low_complexity Low_complexity 1 35 0 1085 163 10 39 chr12 11957663 11957866 -132324623 + AluJo SINE Alu 112 308 -4 223 308 105 47 chr12 11958004 11958176 -132324313 - MIR SINE MIR -79 183 2 21 57 0 0 chr12 11958368 11958403 -132324086 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr12 11959348 11959372 -132323117 + AT_rich Low_complexity Low_complexity 1 24 0 1721 148 10 36 chr12 11959717 11960021 -132322468 - AluSx SINE Alu -16 296 1 24 0 0 0 chr12 11960024 11960048 -132322441 + AT_rich Low_complexity Low_complexity 1 24 0 452 244 63 28 chr12 11960049 11960373 -132322116 + L1ME3A LINE L1 5470 5845 -333 34 96 0 0 chr12 11960582 11960686 -132321803 + AT_rich Low_complexity Low_complexity 1 104 0 29 28 0 0 chr12 11961069 11961105 -132321384 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr12 11962324 11962346 -132320143 + AT_rich Low_complexity Low_complexity 1 22 0 389 290 100 10 chr12 11963365 11963565 -132318924 + L1MEd LINE L1 924 1141 -4978 249 307 18 18 chr12 11963699 11963862 -132318627 + L1MEd LINE L1 1337 1499 -4811 583 304 25 28 chr12 11964176 11964466 -132318023 + L1ME3 LINE L1 5674 5962 -204 24 0 0 0 chr12 11964702 11964726 -132317763 + AT_rich Low_complexity Low_complexity 1 24 0 183 42 0 0 chr12 11965681 11965705 -132316784 + (TG)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr12 11967432 11967464 -132315025 + AT_rich Low_complexity Low_complexity 1 32 0 1892 137 3 42 chr12 11967887 11968200 -132314289 - AluSx SINE Alu -11 301 1 327 331 63 17 chr12 11968666 11968841 -132313648 + MIR SINE MIR 1 183 -79 1310 207 41 4 chr12 11968991 11969262 -132313227 - AluJo SINE Alu -31 281 1 931 246 29 20 chr12 11969443 11969785 -132312704 + L1M4 LINE L1 4576 4920 -1226 2633 122 23 54 chr12 11969794 11970310 -132312179 + L1MA2 LINE L1 2664 3163 -4402 6266 122 13 60 chr12 11970337 11976630 -132305859 + L1PA7 LINE L1 12 6151 -3 14320 177 14 19 chr12 11976630 11978380 -132304109 + L1MA2 LINE L1 3170 4928 -2795 233 29 0 29 chr12 11978380 11978415 -132304074 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 14320 177 14 19 chr12 11978415 11980680 -132301809 + L1MA2 LINE L1 4928 7173 -550 2374 75 0 7 chr12 11980680 11980987 -132301502 + AluSc SINE Alu 1 305 -4 14320 177 14 19 chr12 11980987 11981536 -132300953 + L1MA2 LINE L1 7173 7723 0 1541 255 51 16 chr12 11982261 11982712 -132299777 - L1ME LINE L1 -5598 472 6 219 271 0 0 chr12 11984030 11984078 -132298411 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 736 257 11 83 chr12 12084641 12084917 -132197572 - AluJb SINE Alu -54 258 3 1075 209 19 12 chr12 12085667 12085926 -132196563 - HSMAR2 DNA Mariner -2 1300 1040 36948 62 6 1 chr12 12085926 12090600 -132191889 + L1PA4 LINE L1 31 4730 -1416 7909 36 5 1 chr12 12090605 12091856 -132190633 + L1PA4 LINE L1 4900 6152 -3 936 259 79 20 chr12 12091871 12092265 -132190224 + L1ME3A LINE L1 5545 5961 -209 203 162 0 0 chr12 12092297 12092334 -132190155 + A-rich Low_complexity Low_complexity 4 40 0 2940 199 19 11 chr12 12092459 12093106 -132189383 - L1P LINE L1 -798 5348 4697 376 239 23 34 chr12 12093121 12093209 -132189280 + MLT1C LTR MaLR 1 87 -418 1076 181 0 0 chr12 12093209 12093375 -132189114 - FRAM SINE Alu -10 166 1 743 242 113 51 chr12 12093376 12093733 -132188756 + MLT1C LTR MaLR 80 618 -8 380 286 71 14 chr12 12094064 12094204 -132188285 - L2 LINE L2 -206 3066 2919 3604 64 2 7 chr12 12094269 12094719 -132187770 + LTR7 LTR ERV1 1 448 -2 21058 90 58 30 chr12 12094721 12097921 -132184568 + HERVH LTR ERV1 1 3290 -4423 3407 118 4 2 chr12 12097911 12098412 -132184077 + HERVH LTR ERV1 3492 3993 -3720 * 2901 138 0 2 chr12 12098414 12098835 -132183654 + HERVH LTR ERV1 4488 4907 -2806 2253 91 0 0 chr12 12099133 12099418 -132183071 + AluY SINE Alu 9 293 -18 1102 176 16 0 chr12 12100037 12100224 -132182265 - AluJb SINE Alu -2 310 121 3579 137 20 20 chr12 12100231 12100831 -132181658 - L1PA13 LINE L1 -8 6155 5556 438 185 0 0 chr12 12100831 12100896 -132181593 - AluJ/FLAM SINE Alu -237 75 11 1382 209 61 0 chr12 12100907 12101184 -132181305 - AluJo SINE Alu -18 294 1 236 277 60 0 chr12 12101261 12101344 -132181145 - L2 LINE L2 0 3313 3226 409 335 197 13 chr12 12101376 12101615 -132180874 + L3 LINE CR1 1220 1502 -75 1682 175 39 21 chr12 12101727 12102064 -132180425 + MER61A LTR ERV1 1 343 0 1741 157 7 4 chr12 12102133 12102414 -132180075 + AluJb SINE Alu 1 282 -30 33 0 0 0 chr12 12102419 12102452 -132180037 + AT_rich Low_complexity Low_complexity 1 33 0 1711 175 4 4 chr12 12103253 12103533 -132178956 + AluJo SINE Alu 3 282 -30 240 86 0 0 chr12 12103536 12103571 -132178918 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 275 311 62 50 chr12 12103573 12103734 -132178755 + MIR SINE MIR 20 182 -80 354 235 49 20 chr12 12104119 12104221 -132178268 + MIR SINE MIR 98 202 -60 203 86 0 29 chr12 12104807 12104842 -132177647 + (CCTG)n Simple_repeat Simple_repeat 4 37 0 3042 251 35 12 chr12 12106951 12107937 -132174552 + L1M4 LINE L1 2394 3402 -2744 252 284 0 0 chr12 12107957 12108063 -132174426 + L1M4 LINE L1 2915 3020 -3126 2591 52 0 0 chr12 12108086 12108394 -132174095 + AluY SINE Alu 2 309 -2 4816 201 29 25 chr12 12108396 12109469 -132173020 + HSMAR2 DNA Mariner 47 1123 -179 353 292 29 15 chr12 12109471 12109608 -132172881 + HERVL40 LTR ERVL 109 247 -5283 325 246 43 0 chr12 12110759 12110828 -132171661 - MER69 DNA AcHobo -97 80 9 26 0 0 0 chr12 12111059 12111085 -132171404 + AT_rich Low_complexity Low_complexity 1 26 0 347 310 35 105 chr12 12111478 12111678 -132170811 + HAL1 LINE L1 19 204 -2303 189 94 0 0 chr12 12111904 12111936 -132170553 + (TC)n Simple_repeat Simple_repeat 1 32 0 590 248 129 0 chr12 12112282 12112484 -132170005 - MLT1G1 LTR MaLR -311 284 57 199 297 62 0 chr12 12112713 12112777 -132169712 - MIR3 SINE MIR -40 168 101 382 272 111 19 chr12 12112802 12112964 -132169525 + MIR SINE MIR 86 262 0 3645 140 62 12 chr12 12113814 12114394 -132168095 - MER4B LTR ERV1 -1 609 1 435 138 319 0 chr12 12115229 12115323 -132167166 + MER3 DNA MER1_type 29 152 -57 2090 139 137 11 chr12 12115343 12115723 -132166766 + MSTA LTR MaLR 1 428 0 1718 181 10 23 chr12 12116130 12116440 -132166049 + AluJo SINE Alu 1 306 -6 5026 169 9 1 chr12 12116553 12117430 -132165059 - L1PA13 LINE L1 -1299 4847 3964 6432 91 31 8 chr12 12117418 12118707 -132163782 + L1PA13 LINE L1 4847 6163 0 2627 232 47 38 chr12 12119045 12119767 -132162722 + HSMAR2 DNA Mariner 205 993 -309 1996 125 11 3 chr12 12119767 12120054 -132162435 + L1PB1 LINE L1 5860 6148 -3 2627 232 47 38 chr12 12120054 12120367 -132162122 + HSMAR2 DNA Mariner 993 1302 0 26 30 0 0 chr12 12120796 12120829 -132161660 + AT_rich Low_complexity Low_complexity 1 33 0 999 231 41 19 chr12 12121137 12121250 -132161239 + AluJo SINE Alu 16 125 -187 180 0 0 0 chr12 12121250 12121270 -132161219 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 999 231 41 19 chr12 12121270 12121425 -132161064 + AluJo SINE Alu 125 290 -22 822 240 11 107 chr12 12121850 12122216 -132160273 + MLT1B LTR MaLR 47 377 -13 254 222 14 28 chr12 12122216 12122288 -132160201 - L2 LINE L2 -910 2404 2334 300 276 13 0 chr12 12123350 12123426 -132159063 - HERVL40 LTR ERVL -3403 2127 2051 1404 235 7 17 chr12 12123791 12124117 -132158372 + AluJo SINE Alu 3 325 0 417 299 22 7 chr12 12124695 12124832 -132157657 - HERVL40 LTR ERVL -5283 247 109 4780 208 22 36 chr12 12124834 12124936 -132157553 - HSMAR2 DNA Mariner -179 1123 1021 5979 97 6 68 chr12 12124936 12125817 -132156672 - LTR12 LTR ERV1 0 826 1 4780 208 22 36 chr12 12125817 12126849 -132155640 - HSMAR2 DNA Mariner -281 1021 5 225 203 0 34 chr12 12127590 12127649 -132154840 + L2 LINE L2 2334 2390 -924 833 223 11 114 chr12 12127666 12128016 -132154473 - MLT1B LTR MaLR -20 370 57 1770 241 64 11 chr12 12128611 12129047 -132153442 + L1MC4 LINE L1 7323 7781 -261 2186 134 13 0 chr12 12129057 12129364 -132153125 - AluSx SINE Alu 0 312 2 6056 81 1 13 chr12 12129365 12130194 -132152295 + L1PA14 LINE L1 5343 6161 0 990 153 59 72 chr12 12130751 12130973 -132151516 - MER20 DNA MER1_type 0 219 1 2037 133 7 10 chr12 12131120 12131421 -132151068 - AluSx SINE Alu -12 300 1 3127 166 49 53 chr12 12131423 12132172 -132150317 - L1MB2 LINE L1 -346 5825 5105 276 209 33 55 chr12 12132309 12132400 -132150089 + Zaphod DNA AcHobo 3943 4031 0 337 188 104 10 chr12 12132411 12132507 -132149982 - HAL1 LINE L1 -1160 1347 1243 800 277 115 58 chr12 12132518 12132697 -132149792 - HAL1 LINE L1 -1310 1197 1030 2327 85 0 3 chr12 12132697 12132991 -132149498 + AluSc SINE Alu 1 293 -16 800 277 115 58 chr12 12132991 12133548 -132148941 - HAL1 LINE L1 -1477 1030 419 532 285 44 13 chr12 12133999 12134227 -132148262 + L2 LINE L2 1850 2084 -1230 431 304 9 0 chr12 12134221 12134336 -132148153 - L2 LINE L2 -1 3271 3156 * 273 329 75 28 chr12 12134315 12134570 -132147919 + L2 LINE L2 2050 2316 -998 * 247 234 0 0 chr12 12134763 12134810 -132147679 + MER3 DNA MER1_type 41 87 -122 * 296 216 27 0 chr12 12134775 12134849 -132147640 - MER3 DNA MER1_type -5 204 129 31 26 0 0 chr12 12134849 12134887 -132147602 + AT_rich Low_complexity Low_complexity 1 38 0 856 206 29 29 chr12 12135017 12135255 -132147234 + L1MDa LINE L1 2322 2559 -3981 34 65 0 0 chr12 12135328 12135390 -132147099 + AT_rich Low_complexity Low_complexity 1 62 0 213 282 165 0 chr12 12135555 12135640 -132146849 + L2 LINE L2 2123 2221 -1093 252 285 97 35 chr12 12136810 12136954 -132145535 - L2 LINE L2 -675 2639 2487 3841 156 23 68 chr12 12137364 12137612 -132144877 + L1MB2 LINE L1 5415 5673 -498 1943 151 0 0 chr12 12137612 12137896 -132144593 - AluSx SINE Alu -23 289 6 3841 156 23 68 chr12 12137896 12138437 -132144052 + L1MB2 LINE L1 5673 6168 -3 650 236 16 102 chr12 12138451 12138705 -132143784 - MIR SINE MIR -1 261 30 201 268 179 36 chr12 12139601 12139713 -132142776 - L2 LINE L2 -4 3268 3141 180 337 23 35 chr12 12139865 12139951 -132142538 - L2 LINE L2 -208 3064 2980 8718 193 31 19 chr12 12140178 12141807 -132140682 + MSTB-int LTR MaLR 3 1651 0 681 190 8 0 chr12 12141807 12141928 -132140561 + MSTB LTR MaLR 1 122 -304 354 248 57 29 chr12 12142143 12142248 -132140241 + L2 LINE L2 3202 3309 -4 466 261 134 0 chr12 12142375 12142509 -132139980 + L2 LINE L2 2923 3074 -239 816 146 0 23 chr12 12142595 12142725 -132139764 - FLAM_C SINE Alu -16 127 1 340 225 225 22 chr12 12142736 12142874 -132139615 + L2 LINE L2 3148 3313 0 22 0 0 0 chr12 12142911 12142933 -132139556 + AT_rich Low_complexity Low_complexity 1 22 0 1667 170 46 0 chr12 12143402 12143684 -132138805 - AluJb SINE Alu -17 295 1 207 0 0 0 chr12 12143738 12143761 -132138728 + (T)n Simple_repeat Simple_repeat 1 23 0 1404 212 3 35 chr12 12144903 12145056 -132137433 - L1MC3 LINE L1 -1857 5928 5789 1827 149 3 44 chr12 12145056 12145371 -132137118 + AluJo SINE Alu 1 302 -10 1404 212 3 35 chr12 12145371 12145533 -132136956 - L1MC3 LINE L1 -1996 5789 5623 22 0 0 0 chr12 12145923 12145945 -132136544 + AT_rich Low_complexity Low_complexity 1 22 0 312 160 0 0 chr12 12146131 12146181 -132136308 - MIR SINE MIR -67 141 92 453 274 70 13 chr12 12146327 12146484 -132136005 - MIR3 SINE MIR -10 198 33 1552 174 7 27 chr12 12147143 12147436 -132135053 - AluJo SINE Alu -10 302 16 979 287 93 28 chr12 12148760 12149231 -132133258 + HAL1 LINE L1 1347 1848 -659 323 216 0 34 chr12 12149277 12149365 -132133124 + HAL1 LINE L1 2012 2096 -411 231 282 167 0 chr12 12149696 12149774 -132132715 - MLT1F LTR MaLR -300 267 177 528 243 39 72 chr12 12149807 12149988 -132132501 - MLT1F LTR MaLR -341 201 27 198 302 54 85 chr12 12150130 12150259 -132132230 - L2 LINE L2 -385 2928 2804 * 839 273 131 35 chr12 12150258 12150745 -132131744 - L2 LINE L2 -1385 1929 1396 729 146 0 0 chr12 12150895 12151005 -132131484 - MSTA LTR MaLR 0 428 319 661 170 0 0 chr12 12151009 12151103 -132131386 - AluS SINE Alu -217 95 2 1369 162 113 35 chr12 12151266 12151550 -132130939 + AluJo SINE Alu 1 306 -6 1338 164 0 5 chr12 12152095 12152308 -132130181 + AluJb SINE Alu 85 296 -16 187 308 15 15 chr12 12152310 12152375 -132130114 + MER5A DNA MER1_type 46 110 -79 291 381 34 0 chr12 12152718 12152865 -132129624 + L2 LINE L2 3121 3272 0 194 212 0 0 chr12 12153441 12153474 -132129015 + L2 LINE L2 3271 3303 -10 829 183 0 0 chr12 12153687 12153818 -132128671 + FLAM_C SINE Alu 1 131 -2 726 231 15 0 chr12 12153877 12154033 -132128456 - AluJb SINE Alu 0 305 148 720 202 0 0 chr12 12154192 12154311 -132128178 + FLAM_A SINE Alu 1 119 -14 417 273 51 21 chr12 12154434 12154692 -132127797 + MLT1J LTR MaLR 33 337 -174 242 135 0 0 chr12 12154738 12154775 -132127714 + MLT1J LTR MaLR 427 463 -48 217 200 20 20 chr12 12155343 12155393 -132127096 - MIR SINE MIR -81 127 78 2061 196 39 61 chr12 12155437 12155948 -132126541 - LTR54 LTR ERV1 -3 507 8 999 252 27 17 chr12 12156073 12156371 -132126118 - AluJb SINE Alu -1 301 1 4569 79 35 36 chr12 12156568 12157225 -132125264 - SVA Other Other 0 1386 731 1593 67 19 19 chr12 12159470 12159679 -132122810 - L1PA10 LINE L1 -12 6156 5948 663 156 11 22 chr12 12160389 12160569 -132121920 + CT-rich Low_complexity Low_complexity 2 179 0 344 67 0 0 chr12 12160569 12160644 -132121845 + (TTTG)n Simple_repeat Simple_repeat 1 75 0 375 268 103 56 chr12 12161474 12161687 -132120802 + MIR SINE MIR 6 228 -34 773 350 91 20 chr12 12161755 12162415 -132120074 + L2 LINE L2 1395 2101 -1213 1307 242 39 76 chr12 12162596 12162954 -132119535 - L1MDa LINE L1 -3930 2610 2283 1638 52 0 0 chr12 12162954 12163147 -132119342 + L1PA4 LINE L1 5963 6155 0 1307 242 39 76 chr12 12163147 12163407 -132119082 - L1MDa LINE L1 -4257 2283 2015 3779 182 152 17 chr12 12163432 12164502 -132117987 - L1P LINE L1 -1499 4647 3449 1800 190 0 0 chr12 12164766 12165055 -132117434 + AluJb SINE Alu 1 289 -23 560 53 13 0 chr12 12166448 12166524 -132115965 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 1740 124 0 4 chr12 12166525 12166767 -132115722 - AluSx SINE Alu -39 273 33 576 205 114 18 chr12 12166767 12166933 -132115556 - FRAM SINE Alu 0 176 1 209 250 0 0 chr12 12167530 12167574 -132114915 + C-rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr12 12167747 12167779 -132114710 + GC_rich Low_complexity Low_complexity 1 32 0 226 349 25 34 chr12 12168055 12168290 -132114199 - MLT1G1 LTR MaLR -356 239 7 290 262 204 47 chr12 12169229 12169401 -132113088 + MIR SINE MIR 8 206 -56 1203 234 155 29 chr12 12170466 12170911 -132111578 - MLT1D LTR MaLR -4 501 1 23 68 0 0 chr12 12171184 12171228 -132111261 + GC_rich Low_complexity Low_complexity 1 44 0 343 223 0 42 chr12 12171228 12171283 -132111206 + C-rich Low_complexity Low_complexity 6 62 -143 189 94 0 0 chr12 12171283 12171315 -132111174 + (CCCCCG)n Simple_repeat Simple_repeat 5 36 0 343 223 0 42 chr12 12171315 12171441 -132111048 + C-rich Low_complexity Low_complexity 62 205 0 266 229 16 64 chr12 12171373 12171561 -132110928 + (CCCG)n Simple_repeat Simple_repeat 2 180 0 * 2602 32 0 0 chr12 12171714 12172024 -132110465 - L1P LINE L1 -1001 5145 4836 411 223 29 29 chr12 12172023 12172162 -132110327 - L1ME LINE L1 -606 5556 5418 * 437 246 41 16 chr12 12172688 12172810 -132109679 + MER65A LTR ERV1 1 125 -320 327 272 92 95 chr12 12172816 12173184 -132109305 + MER65A LTR ERV1 79 445 0 316 270 56 71 chr12 12173296 12173422 -132109067 - L2 LINE L2 -5 3267 3144 2284 72 10 3 chr12 12174194 12174501 -132107988 - AluSc SINE Alu 0 309 1 605 144 34 34 chr12 12174836 12174954 -132107535 + FLAM_C SINE Alu 7 124 -19 193 284 37 12 chr12 12175882 12175963 -132106526 + L2 LINE L2 2307 2389 -925 495 219 88 22 chr12 12175969 12176106 -132106383 - MLT1B LTR MaLR -5 385 240 265 259 50 65 chr12 12176141 12176342 -132106147 - L1ME LINE L1 -5134 936 739 351 363 6 22 chr12 12176716 12176895 -132105594 + G-rich Low_complexity Low_complexity 3 178 0 202 385 11 17 chr12 12176812 12176991 -132105498 + GA-rich Low_complexity Low_complexity 1 178 0 * 2013 184 73 14 chr12 12178597 12179091 -132103398 - Charlie1b DNA MER1_type 0 523 1 1829 165 0 0 chr12 12180377 12180674 -132101815 + AluJb SINE Alu 1 297 -15 2706 13 0 0 chr12 12182580 12182887 -132099602 + AluYa5 SINE Alu 1 307 -4 315 49 0 0 chr12 12183179 12183220 -132099269 + (CA)n Simple_repeat Simple_repeat 2 42 0 311 319 28 28 chr12 12183238 12183382 -132099107 + L2 LINE L2 3123 3266 -6 296 379 63 19 chr12 12183407 12183613 -132098876 - L2 LINE L2 -527 2787 2573 190 260 240 32 chr12 12183644 12183798 -132098691 - L2 LINE L2 -902 2412 2227 253 287 30 10 chr12 12184195 12184296 -132098193 + MIR3 SINE MIR 87 189 -19 1107 73 7 0 chr12 12185602 12185753 -132096736 - AluY SINE Alu -5 306 155 977 302 205 19 chr12 12185783 12186653 -132095836 - L2 LINE L2 -660 2654 1624 489 322 29 73 chr12 12186860 12187105 -132095384 - MIR SINE MIR -9 253 20 350 182 234 0 chr12 12187433 12187510 -132094979 - MER69 DNA AcHobo -1131 95 1 21 36 0 0 chr12 12187790 12187818 -132094671 + AT_rich Low_complexity Low_complexity 1 28 0 1772 146 7 4 chr12 12187843 12188146 -132094343 - AluJb SINE Alu 0 304 1 565 326 113 34 chr12 12188250 12188578 -132093911 + L3 LINE CR1 1212 1565 -12 219 69 0 0 chr12 12189281 12189310 -132093179 + (TGG)n Simple_repeat Simple_repeat 3 31 0 572 345 0 0 chr12 12189316 12189487 -132093002 - MIR SINE MIR -3 259 89 206 357 32 45 chr12 12192714 12192868 -132089621 - MER5A DNA MER1_type -5 184 33 334 299 24 0 chr12 12193425 12193552 -132088937 - L1ME LINE L1 -316 5805 5676 1814 119 17 20 chr12 12194108 12194402 -132088087 - AluSg SINE Alu -17 293 1 270 287 238 0 chr12 12194442 12194543 -132087946 - MER5A DNA MER1_type -14 175 51 266 302 35 0 chr12 12194598 12194684 -132087805 - MER110 LTR ERV1 0 491 403 2012 153 18 12 chr12 12194702 12195035 -132087454 - MER1B DNA MER1_type -4 335 1 3066 111 125 36 chr12 12195037 12195596 -132086893 + MER4B LTR ERV1 2 610 0 897 208 161 74 chr12 12195602 12195981 -132086508 - MER110A LTR ERV1 -56 412 1 373 318 65 46 chr12 12196543 12196760 -132085729 - L2 LINE L2 -475 2839 2619 242 239 87 22 chr12 12197089 12197181 -132085308 - MLT1J1 LTR MaLR -1 445 348 * 1198 283 57 14 chr12 12197176 12197547 -132084942 - MLT1J LTR MaLR -110 401 15 254 356 177 17 chr12 12197635 12198042 -132084447 - L2 LINE L2 -708 2606 2135 3671 222 55 3 chr12 12199122 12200032 -132082457 - L1ME1 LINE L1 -27 6139 5191 806 169 0 40 chr12 12200073 12200221 -132082268 - FAM SINE Alu -43 142 1 316 184 66 0 chr12 12200286 12200362 -132082127 - L1ME1 LINE L1 -973 5173 5093 399 176 5 0 chr12 12200396 12200483 -132082006 + L1M4 LINE L1 4736 4825 -1321 2241 119 94 44 chr12 12200507 12200797 -132081692 - Ricksha DNA DNA -6 3240 2919 1559 88 14 0 chr12 12200797 12201012 -132081477 + L1PA11 LINE L1 5956 6173 -1 2241 119 94 44 chr12 12201012 12201156 -132081333 - Ricksha DNA DNA -327 2919 2784 * 2783 173 6 16 chr12 12201152 12201644 -132080845 - Ricksha DNA DNA -2656 590 104 916 260 56 54 chr12 12201653 12202137 -132080352 - L1MC5 LINE L1 -282 7679 7195 272 346 13 97 chr12 12202516 12202744 -132079745 + L3 LINE CR1 848 1056 -521 846 222 48 39 chr12 12202916 12203247 -132079242 - L1MC4 LINE L1 -1060 6982 6449 515 315 51 47 chr12 12203575 12203851 -132078638 - L2 LINE L2 -661 2653 2377 788 212 114 0 chr12 12203952 12204145 -132078344 + MER58C DNA MER1_type 1 215 0 251 346 110 15 chr12 12205202 12205338 -132077151 + L2 LINE L2 3124 3272 0 812 205 13 8 chr12 12205515 12205711 -132076778 + MLT1J LTR MaLR 5 163 -287 604 118 7 37 chr12 12205890 12206026 -132076463 + (TTTC)n Simple_repeat Simple_repeat 4 135 0 1332 185 34 14 chr12 12206042 12206334 -132076155 - L1MB3 LINE L1 -3 6180 5883 22 0 0 0 chr12 12206337 12206359 -132076130 + AT_rich Low_complexity Low_complexity 1 22 0 420 158 0 13 chr12 12206361 12206437 -132076052 - FLAM_A SINE Alu -21 121 47 2022 110 10 10 chr12 12206460 12206760 -132075729 - AluSc SINE Alu -9 300 1 600 174 0 0 chr12 12207146 12207244 -132075245 - AluJ/FLAM SINE Alu -210 102 5 206 235 153 24 chr12 12207630 12207715 -132074774 - MIR3 SINE MIR -10 198 103 213 94 0 0 chr12 12211921 12211953 -132070536 + (T)n Simple_repeat Simple_repeat 1 32 0 2388 251 74 8 chr12 12212080 12213357 -132069132 - L1MB3 LINE L1 -574 5668 4299 205 317 17 0 chr12 12215365 12215425 -132067064 - MIR SINE MIR -117 145 85 285 350 6 13 chr12 12215710 12215867 -132066622 + MER112 DNA MER1_type 1 156 -104 207 0 0 0 chr12 12215869 12215892 -132066597 + (CTATG)n Simple_repeat Simple_repeat 2 24 0 232 279 36 27 chr12 12216041 12216152 -132066337 - MER112 DNA MER1_type -143 117 6 315 0 0 0 chr12 12216197 12216232 -132066257 + (TG)n Simple_repeat Simple_repeat 1 35 0 456 77 0 0 chr12 12216232 12216297 -132066192 + (GA)n Simple_repeat Simple_repeat 2 66 0 263 296 0 14 chr12 12216624 12216695 -132065794 + (CA)n Simple_repeat Simple_repeat 1 70 0 194 247 180 45 chr12 12216822 12216911 -132065578 + MIR SINE MIR 42 142 -66 269 233 33 0 chr12 12217893 12217953 -132064536 - MIR SINE MIR -6 256 195 454 208 10 10 chr12 12218181 12218277 -132064212 - MER39 LTR ERV1 -336 371 276 397 250 75 25 chr12 12218266 12218386 -132064103 - MER39 LTR ERV1 -581 126 1 * 422 200 0 0 chr12 12218577 12218657 -132063832 + MER116 DNA Mariner 1 80 0 449 146 101 0 chr12 12219180 12219269 -132063220 + MIR SINE MIR 73 170 -92 1753 164 62 49 chr12 12219273 12219658 -132062831 - MLT1B LTR MaLR 0 390 1 181 190 35 9 chr12 12219892 12220008 -132062481 + (TA)n Simple_repeat Simple_repeat 2 120 0 240 320 60 77 chr12 12220118 12220471 -132062018 + L2 LINE L2 2556 2902 -412 2710 183 14 2 chr12 12220771 12221268 -132061221 + L1MB3 LINE L1 5681 6183 0 2286 103 3 0 chr12 12221687 12221979 -132060510 + AluSq SINE Alu 1 293 -20 211 295 0 32 chr12 12223151 12223246 -132059243 + A-rich Low_complexity Low_complexity 3 94 0 360 0 0 0 chr12 12223726 12223766 -132058723 + (TG)n Simple_repeat Simple_repeat 1 40 0 2335 81 3 0 chr12 12223970 12224268 -132058221 + AluSc SINE Alu 1 299 -10 2060 88 19 0 chr12 12225315 12225575 -132056914 - AluSx SINE Alu -11 301 37 974 192 67 10 chr12 12226383 12226557 -132055932 - AluJb SINE Alu -8 304 117 278 0 54 0 chr12 12226557 12226594 -132055895 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 974 192 67 10 chr12 12226594 12226612 -132055877 - AluJb SINE Alu -195 117 101 2437 56 3 7 chr12 12226732 12226909 -132055580 - AluY SINE Alu -10 301 124 212 0 36 0 chr12 12226909 12226937 -132055552 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2437 56 3 7 chr12 12226937 12227061 -132055428 - AluY SINE Alu -187 124 1 28 0 0 0 chr12 12227396 12227424 -132055065 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 12227574 12227596 -132054893 + AT_rich Low_complexity Low_complexity 1 22 0 2365 76 7 3 chr12 12231298 12231600 -132050889 - AluSc SINE Alu -6 303 1 1553 194 16 32 chr12 12231929 12232238 -132050251 + AluJo SINE Alu 1 304 -8 1735 202 56 31 chr12 12232281 12232637 -132049852 + MLT1A1 LTR MaLR 1 365 0 1324 56 6 0 chr12 12232740 12232901 -132049588 - L1PA4 LINE L1 -1 6154 5993 200 188 0 0 chr12 12233067 12233099 -132049390 + (TG)n Simple_repeat Simple_repeat 1 32 0 30 69 0 0 chr12 12233194 12233252 -132049237 + AT_rich Low_complexity Low_complexity 1 58 0 22 56 0 0 chr12 12233564 12233600 -132048889 + AT_rich Low_complexity Low_complexity 1 36 0 864 228 146 24 chr12 12234651 12235020 -132047469 - L1M4 LINE L1 -1546 4994 4581 4463 242 93 26 chr12 12235163 12236752 -132045737 - L1MDa LINE L1 -974 5566 3872 294 208 26 0 chr12 12236793 12236870 -132045619 + L1M4 LINE L1 3863 3941 -2205 2477 57 0 0 chr12 12236936 12237233 -132045256 - AluY SINE Alu -13 298 2 252 284 0 0 chr12 12237256 12237362 -132045127 - L1M4 LINE L1 -3126 3020 2915 3681 247 33 55 chr12 12237382 12238922 -132043567 - L1MDa LINE L1 -2744 3796 2279 1638 52 0 0 chr12 12238922 12239115 -132043374 + L1PA4 LINE L1 5963 6155 0 3681 247 33 55 chr12 12239115 12239375 -132043114 - L1MDa LINE L1 -4261 2279 2015 16968 42 1 1 chr12 12239400 12241449 -132041040 - L1P LINE L1 -1499 4647 2599 484 229 98 49 chr12 12241566 12241781 -132040708 - MLT1A2 LTR MaLR 0 549 335 493 310 33 18 chr12 12242226 12242561 -132039928 + L1M4 LINE L1 4938 5277 -869 648 222 52 20 chr12 12242572 12242725 -132039764 + MER63 DNA MER1_type 2 785 -277 2636 132 48 10 chr12 12242853 12243269 -132039220 - MSTB1 LTR MaLR 0 432 1 1007 252 19 56 chr12 12243393 12243714 -132038775 - L1MD3 LINE L1 -1 7994 7686 1196 252 45 38 chr12 12244232 12244683 -132037806 + MER77 LTR ERV1 177 599 -6 21 71 0 0 chr12 12245512 12245554 -132036935 + AT_rich Low_complexity Low_complexity 1 42 0 7683 52 0 15 chr12 12245629 12246587 -132035902 + L1PA8 LINE L1 5221 6164 -8 565 304 92 17 chr12 12248275 12248309 -132034180 - MIR SINE MIR -4 258 228 2520 152 22 0 chr12 12248309 12248717 -132033772 - L1MB5 LINE L1 -12 6162 5746 565 304 92 17 chr12 12248717 12248922 -132033567 - MIR SINE MIR -34 228 1 273 169 0 0 chr12 12250002 12250061 -132032428 + (TG)n Simple_repeat Simple_repeat 1 59 0 612 168 11 6 chr12 12250094 12250273 -132032216 + (TG)n Simple_repeat Simple_repeat 1 180 0 194 219 0 0 chr12 12250472 12250513 -132031976 - MIR SINE MIR -103 105 65 1347 214 63 9 chr12 12250677 12251008 -132031481 - MLT1A2 LTR MaLR -25 349 1 815 101 8 214 chr12 12251170 12251408 -132031081 + MER53 DNA DNA 1 189 0 192 77 0 0 chr12 12251517 12251543 -132030946 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 1569 222 0 0 chr12 12251543 12251895 -132030594 - AluJb SINE Alu 0 354 3 218 338 0 12 chr12 12252159 12252239 -132030250 + GA-rich Low_complexity Low_complexity 6 84 0 360 315 12 42 chr12 12252341 12252506 -132029983 - MIR3 SINE MIR -7 201 42 342 330 9 0 chr12 12252528 12252640 -132029849 - MIR3 SINE MIR -11 197 85 252 0 0 0 chr12 12253047 12253075 -132029414 + (TG)n Simple_repeat Simple_repeat 2 29 0 665 100 11 0 chr12 12253577 12253667 -132028822 - FLAM_A SINE Alu -20 122 32 445 115 16 0 chr12 12255784 12255845 -132026644 + U7 snRNA snRNA 2 63 0 1284 87 5 32 chr12 12256089 12256274 -132026215 - LTR9 LTR ERV1 -432 180 1 239 241 0 0 chr12 12256359 12256413 -132026076 + MLT1C LTR MaLR 302 355 -112 4054 110 282 70 chr12 12256415 12257694 -132024795 + pTR5 LTR ERV1 743 2438 0 605 189 0 9 chr12 12257697 12257808 -132024681 + MLT1C LTR MaLR 354 463 -4 270 279 11 28 chr12 12258567 12258681 -132023808 + MLT1F LTR MaLR 25 105 -437 293 195 29 2 chr12 12258707 12258775 -132023714 - MLT1B LTR MaLR 0 390 330 2055 72 3 51 chr12 12258863 12259185 -132023304 - AluSg SINE Alu 0 308 1 352 310 67 106 chr12 12259185 12259440 -132023049 - L2 LINE L2 -10 3262 3018 246 340 122 20 chr12 12259564 12259761 -132022728 - L2 LINE L2 -456 2858 2642 4628 199 94 43 chr12 12259999 12260416 -132022073 + L1MC4 LINE L1 6458 6852 -1190 2085 99 0 4 chr12 12260416 12260711 -132021778 + AluY SINE Alu 12 305 0 4628 199 94 43 chr12 12260711 12260941 -132021548 + L1MC4 LINE L1 6852 7069 -973 1941 126 29 0 chr12 12260941 12261219 -132021270 - AluJb SINE Alu -26 286 1 4628 199 94 43 chr12 12261219 12261828 -132020661 + L1MC4 LINE L1 7069 7781 -261 1161 133 24 0 chr12 12261850 12262016 -132020473 - AluSg/x SINE Alu -3 309 140 1174 200 18 49 chr12 12262020 12262305 -132020184 + L1MC4 LINE L1 7767 8042 0 380 248 5 101 chr12 12262317 12262456 -132020033 + L1ME1 LINE L1 5927 6039 -127 1292 174 109 7 chr12 12262456 12262732 -132019757 - AluJo SINE Alu -8 304 1 380 248 5 101 chr12 12262732 12262810 -132019679 + L1ME1 LINE L1 6039 6123 -43 389 287 90 0 chr12 12263247 12263369 -132019120 + MIR3 SINE MIR 9 141 -67 199 0 0 61 chr12 12264276 12264309 -132018180 + (ATG)n Simple_repeat Simple_repeat 3 33 0 235 287 124 8 chr12 12264388 12264517 -132017972 - MIR SINE MIR -66 196 53 186 43 0 0 chr12 12264532 12264555 -132017934 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 727 114 9 44 chr12 12264558 12264672 -132017817 - FRAM SINE Alu -30 146 37 415 92 0 40 chr12 12265974 12266050 -132016439 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 341 70 18 0 chr12 12266749 12266806 -132015683 + (TG)n Simple_repeat Simple_repeat 2 59 0 313 157 0 0 chr12 12266811 12266862 -132015627 + MER53 DNA DNA 139 189 0 3274 197 66 92 chr12 12266883 12267509 -132014980 - L1MC3 LINE L1 -1109 6676 6035 1869 154 7 3 chr12 12267509 12267795 -132014694 - AluJo SINE Alu -25 287 1 3274 197 66 92 chr12 12267795 12268088 -132014401 - L1MC3 LINE L1 -1750 6035 5788 1821 149 3 48 chr12 12268088 12268404 -132014085 + AluJo SINE Alu 1 302 -10 3274 197 66 92 chr12 12268404 12268566 -132013923 - L1MC3 LINE L1 -1997 5788 5623 22 0 0 0 chr12 12268956 12268978 -132013511 + AT_rich Low_complexity Low_complexity 1 22 0 312 160 0 0 chr12 12269164 12269214 -132013275 - MIR SINE MIR -67 141 92 453 274 70 13 chr12 12269360 12269517 -132012972 - MIR3 SINE MIR -10 198 33 1627 177 3 32 chr12 12270176 12270487 -132012002 - AluJo SINE Alu -10 302 1 287 167 0 0 chr12 12271175 12271217 -132011272 + 5S rRNA rRNA 1 42 -79 1932 103 69 28 chr12 12271425 12271716 -132010773 - AluSx SINE Alu -9 303 1 417 234 102 16 chr12 12271942 12272070 -132010419 + L1ME4a LINE L1 5979 6117 -4 1766 152 9 48 chr12 12272164 12272480 -132010009 + AluJo SINE Alu 5 308 -4 309 274 135 55 chr12 12273195 12273432 -132009057 + MLT1L LTR MaLR 355 610 -5 183 42 0 0 chr12 12273726 12273750 -132008739 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 1623 192 7 0 chr12 12273750 12274031 -132008458 - AluJb SINE Alu -27 285 3 27 81 0 0 chr12 12274039 12274101 -132008388 + AT_rich Low_complexity Low_complexity 1 62 0 2150 135 18 6 chr12 12274569 12274902 -132007587 + MER1B DNA MER1_type 3 339 0 25 31 0 0 chr12 12274913 12274945 -132007544 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr12 12275084 12275112 -132007377 + AT_rich Low_complexity Low_complexity 1 28 0 2663 188 27 20 chr12 12275142 12275915 -132006574 - L1M4 LINE L1 -386 5798 5028 2313 78 10 10 chr12 12275915 12276210 -132006279 - AluSg SINE Alu -15 295 1 2663 188 27 20 chr12 12276210 12276260 -132006229 - L1M4 LINE L1 -1156 5028 4980 5103 106 11 68 chr12 12276266 12276389 -132006100 - L1PB4 LINE L1 -14 6142 6014 2517 66 0 0 chr12 12276389 12276691 -132005798 - AluY SINE Alu -9 302 1 5103 106 11 68 chr12 12276691 12276894 -132005595 - L1PB4 LINE L1 -142 6014 5801 2375 85 0 16 chr12 12276894 12277210 -132005279 - AluY SINE Alu 0 311 1 5103 106 11 68 chr12 12277210 12277758 -132004731 - L1PB4 LINE L1 -355 5801 5317 9849 229 50 25 chr12 12278246 12278406 -132004083 - L1M4 LINE L1 -814 5332 5178 2163 121 7 0 chr12 12278406 12278711 -132003778 - AluSx SINE Alu -3 309 3 9849 229 50 25 chr12 12278711 12281316 -132001173 - L1M4 LINE L1 -968 5178 2263 480 244 29 70 chr12 12281316 12281558 -132000931 - L1MC4 LINE L1 -97 8225 2725 1709 150 26 46 chr12 12282323 12282630 -131999859 - AluJo SINE Alu -11 301 1 3719 148 42 17 chr12 12282652 12282864 -131999625 - L1MC4 LINE L1 -4401 2025 1820 2405 71 10 0 chr12 12282864 12283160 -131999329 + AluSp SINE Alu 1 299 -14 3719 148 42 17 chr12 12283160 12283886 -131998603 - L1MC4 LINE L1 -4606 1820 982 22 0 0 0 chr12 12284257 12284279 -131998210 + AT_rich Low_complexity Low_complexity 1 22 0 1056 154 57 92 chr12 12284889 12285116 -131997373 - MER20 DNA MER1_type 0 219 1 399 262 110 4 chr12 12285417 12285596 -131996893 + LTR40c LTR ERVL 142 346 -119 436 209 9 35 chr12 12285724 12285839 -131996650 + MIR SINE MIR 86 197 -65 2660 146 33 12 chr12 12285911 12286330 -131996159 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr12 12287472 12287500 -131994989 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr12 12287579 12287606 -131994883 + AT_rich Low_complexity Low_complexity 1 27 0 1768 157 17 3 chr12 12287614 12287901 -131994588 + AluJo SINE Alu 9 299 -13 2205 119 3 6 chr12 12288278 12288589 -131993900 - AluSx SINE Alu -2 310 1 1685 158 18 7 chr12 12290162 12290485 -131992004 + AluJo SINE Alu 1 326 0 507 139 0 0 chr12 12290544 12290630 -131991859 + L1PB2 LINE L1 6063 6148 -3 279 119 169 0 chr12 12290799 12290858 -131991631 + L2 LINE L2 3201 3269 -3 192 40 0 0 chr12 12290871 12290896 -131991593 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 25 0 0 0 chr12 12291292 12291317 -131991172 + AT_rich Low_complexity Low_complexity 1 25 0 1647 167 10 20 chr12 12291642 12291941 -131990548 + AluJo SINE Alu 1 296 -16 267 293 35 52 chr12 12291998 12292114 -131990375 + L2 LINE L2 3193 3306 -7 265 286 65 13 chr12 12292753 12292830 -131989659 + HAL1 LINE L1 5 85 -2422 780 159 56 0 chr12 12292839 12292965 -131989524 + FLAM_A SINE Alu 1 133 0 241 202 34 92 chr12 12293214 12293333 -131989156 + HAL1 LINE L1 915 1026 -1481 201 356 71 47 chr12 12293359 12293612 -131988877 + L2 LINE L2 2366 2624 -690 336 311 108 78 chr12 12293759 12294103 -131988386 + L2 LINE L2 2826 3179 -93 198 347 28 0 chr12 12294236 12294308 -131988181 - MIR SINE MIR -108 154 81 1053 117 0 7 chr12 12294551 12294696 -131987793 + AluSq/x SINE Alu 1 144 -169 2513 52 0 0 chr12 12294697 12294988 -131987501 + AluY SINE Alu 1 291 -20 35 0 0 0 chr12 12294988 12295023 -131987466 + AT_rich Low_complexity Low_complexity 1 35 0 853 180 186 6 chr12 12295023 12295206 -131987283 + AluSq SINE Alu 1 216 -97 26 0 0 0 chr12 12295223 12295249 -131987240 + AT_rich Low_complexity Low_complexity 1 26 0 427 193 220 37 chr12 12295449 12295558 -131986931 - FLAM_A SINE Alu -4 129 1 481 296 98 40 chr12 12296170 12296498 -131985991 + L2 LINE L2 2148 2494 -820 844 146 0 111 chr12 12297227 12297398 -131985091 + AluJb SINE Alu 141 292 -20 2187 132 0 22 chr12 12297418 12297737 -131984752 + AluSx SINE Alu 1 312 0 2061 140 0 16 chr12 12297998 12298312 -131984177 - AluSx SINE Alu -3 309 1 276 125 47 0 chr12 12298778 12298842 -131983647 + CT-rich Low_complexity Low_complexity 3 69 0 2513 71 0 3 chr12 12298870 12299180 -131983309 + AluY SINE Alu 1 309 -2 274 218 136 55 chr12 12300195 12300305 -131982184 + MIR SINE MIR 11 129 -133 368 162 18 90 chr12 12300594 12300705 -131981784 - L2 LINE L2 -14 3299 3197 2380 91 0 0 chr12 12300739 12301035 -131981454 + AluSp SINE Alu 1 296 -17 1548 253 62 48 chr12 12301420 12301703 -131980786 - L2 LINE L2 -254 3059 2781 1785 182 11 40 chr12 12301703 12302055 -131980434 - MER61A LTR ERV1 0 343 2 1548 253 62 48 chr12 12302055 12302443 -131980046 - L2 LINE L2 -532 2781 2368 2040 130 20 0 chr12 12302939 12303240 -131979249 + AluSx SINE Alu 1 307 -5 542 359 28 35 chr12 12303300 12303590 -131978899 + L2 LINE L2 2486 2773 -541 395 285 46 26 chr12 12303594 12303745 -131978744 - MIR SINE MIR 0 262 109 1019 322 55 21 chr12 12304368 12304902 -131977587 + L2 LINE L2 2765 3313 0 2316 90 0 0 chr12 12304927 12305216 -131977273 - AluSx SINE Alu -17 295 7 412 288 31 31 chr12 12305703 12305863 -131976626 - MIR3 SINE MIR -40 168 9 1261 180 71 59 chr12 12306174 12306513 -131975976 + MER2 DNA MER2_type 2 344 0 343 228 106 41 chr12 12306761 12306884 -131975605 + MIR SINE MIR 21 151 -57 697 261 35 39 chr12 12306959 12307189 -131975300 + MER112 DNA MER1_type 23 251 -9 227 385 31 0 chr12 12307715 12307845 -131974644 + L2 LINE L2 2685 2818 -496 622 67 90 0 chr12 12308135 12308254 -131974235 - AluSg/x SINE Alu 0 308 182 180 235 118 20 chr12 12308420 12308471 -131974018 + L2 LINE L2 3141 3196 -76 1786 126 9 82 chr12 12309226 12309543 -131972946 + AluSx SINE Alu 1 294 -18 321 246 56 24 chr12 12310039 12310165 -131972324 + L1ME4a LINE L1 5989 6118 -3 396 255 0 0 chr12 12311411 12311505 -131970984 - MIR SINE MIR 0 262 169 796 270 107 41 chr12 12311516 12311915 -131970574 - MLT1J2 LTR MaLR 0 450 59 576 186 21 103 chr12 12311915 12312109 -131970380 + MER104 DNA MER2_type 3 180 0 796 270 107 41 chr12 12312109 12312135 -131970354 - MLT1J2 LTR MaLR -391 59 36 2109 81 0 4 chr12 12312516 12312775 -131969714 + AluSg SINE Alu 1 258 -52 207 0 0 0 chr12 12312807 12312830 -131969659 + (TTG)n Simple_repeat Simple_repeat 2 24 0 562 334 80 6 chr12 12312949 12313260 -131969229 - MLT1J2 LTR MaLR -2 448 115 260 336 0 19 chr12 12313646 12313750 -131968739 - MIR SINE MIR -3 259 158 803 198 188 102 chr12 12313828 12314339 -131968150 - MER34C LTR ERV1 0 585 31 2339 93 0 7 chr12 12314566 12314866 -131967623 + AluSg SINE Alu 1 298 -12 2033 127 48 0 chr12 12315081 12315373 -131967116 - AluJo SINE Alu -6 306 1 2443 74 3 0 chr12 12315574 12315873 -131966616 + AluSq SINE Alu 1 300 -13 2253 117 0 0 chr12 12316166 12316466 -131966023 - AluSx SINE Alu -12 300 1 350 246 29 87 chr12 12316839 12316890 -131965599 - MIR3 SINE MIR -7 201 149 950 243 84 63 chr12 12316890 12317223 -131965266 + MER102b DNA MER1_type 2 341 0 350 246 29 87 chr12 12317223 12317309 -131965180 - MIR3 SINE MIR -59 149 72 2344 82 0 3 chr12 12317743 12318034 -131964455 + AluSg SINE Alu 1 290 -20 861 199 141 100 chr12 12318276 12318744 -131963745 + MER34C LTR ERV1 35 521 -64 1493 158 119 75 chr12 12319071 12319500 -131962989 - LTR7 LTR ERV1 -2 448 1 1994 90 22 1 chr12 12319500 12319847 -131962642 - HERVH LTR ERV1 0 7713 7322 1491 116 19 0 chr12 12319845 12320061 -131962428 - HERVH LTR ERV1 -1894 5819 5600 * 4239 137 31 2 chr12 12320062 12320705 -131961784 - HERVH LTR ERV1 -2564 5149 4488 3519 97 4 4 chr12 12320707 12321201 -131961288 - HERVH LTR ERV1 -3720 3993 3500 848 162 20 0 chr12 12321200 12321348 -131961141 - HERVH LTR ERV1 -4423 3290 3140 * 16642 89 34 22 chr12 12321327 12324141 -131958348 - HERVH LTR ERV1 -4718 2995 1 1217 158 88 105 chr12 12324143 12324599 -131957890 - LTR7 LTR ERV1 -2 448 1 255 213 21 0 chr12 12324727 12324774 -131957715 + MER34C-int LTR ERV1 2482 2529 -4889 1071 265 76 57 chr12 12324806 12325411 -131957078 + MER34C-int LTR ERV1 355 929 -5402 278 174 0 0 chr12 12325564 12325610 -131956879 - MSTA LTR MaLR 0 428 383 1014 33 100 0 chr12 12325610 12325730 -131956759 + AluY SINE Alu 1 132 -179 2362 94 0 3 chr12 12325733 12326040 -131956449 + AluY SINE Alu 1 306 -5 2052 169 42 16 chr12 12326040 12326424 -131956065 - MSTA LTR MaLR -34 394 1 2019 202 92 73 chr12 12326424 12327278 -131955211 + MER34C-int LTR ERV1 904 2414 -2457 1333 226 81 68 chr12 12327292 12327770 -131954719 + MER34C-int LTR ERV1 1679 2170 -2766 1639 77 0 14 chr12 12327770 12327991 -131954498 + L1PA8 LINE L1 5952 6169 -3 1333 226 81 68 chr12 12327991 12328190 -131954299 + MER34C-int LTR ERV1 2170 2365 -2571 1686 149 78 24 chr12 12328202 12328498 -131953991 + AluJo SINE Alu 1 312 0 30 59 0 0 chr12 12328498 12328549 -131953940 + AT_rich Low_complexity Low_complexity 1 51 0 708 127 73 0 chr12 12328697 12328807 -131953682 + FRAM SINE Alu 23 140 -36 7027 172 44 72 chr12 12328829 12329104 -131953385 + MER34C-int LTR ERV1 2541 2822 -2114 2100 90 19 32 chr12 12329104 12329442 -131953047 - AluSq SINE Alu 0 313 1 183 42 0 0 chr12 12329449 12329473 -131953016 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 623 171 26 17 chr12 12329477 12329594 -131952895 - FLAM_C SINE Alu -15 118 1 7027 172 44 72 chr12 12329594 12329610 -131952879 + MER34C-int LTR ERV1 2831 2846 -2090 1868 159 3 31 chr12 12329610 12329931 -131952558 - AluJb SINE Alu 0 312 1 7027 172 44 72 chr12 12329931 12330744 -131951745 + MER34C-int LTR ERV1 2846 3680 -1256 1599 172 25 11 chr12 12330744 12331029 -131951460 - AluJo SINE Alu -23 289 1 7027 172 44 72 chr12 12331029 12331256 -131951233 + MER34C-int LTR ERV1 3680 3912 -1024 3860 101 34 2 chr12 12331256 12331793 -131950696 + MER41A LTR ERV1 1 554 0 7027 172 44 72 chr12 12331793 12332202 -131950287 + MER34C-int LTR ERV1 3912 4249 -687 377 182 100 36 chr12 12332203 12332313 -131950176 + LTR37A LTR ERV1 1 117 -309 797 195 63 155 chr12 12332342 12332796 -131949693 + MER34C-int LTR ERV1 4411 4905 -1426 299 114 0 0 chr12 12332796 12332840 -131949649 + L1M2 LINE L1 5513 5556 -741 797 195 63 155 chr12 12332840 12333049 -131949440 + MER34C-int LTR ERV1 4905 6330 -1 905 180 155 126 chr12 12333058 12333581 -131948908 + MER34C LTR ERV1 46 583 -2 6678 151 20 13 chr12 12333594 12333696 -131948793 + L1MA4 LINE L1 4128 4228 -2075 783 83 0 0 chr12 12333696 12333804 -131948685 + (TA)n Simple_repeat Simple_repeat 1 108 0 6678 151 20 13 chr12 12333804 12335357 -131947132 + L1MA4 LINE L1 4228 5795 -508 442 109 16 0 chr12 12335362 12335426 -131947063 - L1MA4A LINE L1 -334 5969 5905 1041 188 0 0 chr12 12335426 12335596 -131946893 - FRAM SINE Alu -6 170 1 2649 141 30 36 chr12 12335596 12335705 -131946784 + L1MA4 LINE L1 5803 5911 -389 1863 178 0 3 chr12 12335705 12335998 -131946491 + AluJo SINE Alu 5 296 -16 2439 75 0 3 chr12 12336000 12336307 -131946182 + AluY SINE Alu 1 306 -5 2649 141 30 36 chr12 12336307 12336691 -131945798 + L1MA4 LINE L1 5912 6296 -4 210 235 45 121 chr12 12337045 12337131 -131945358 + MIR3 SINE MIR 66 140 -68 702 214 55 33 chr12 12337131 12337238 -131945251 + MER5A DNA MER1_type 4 118 -71 2322 115 0 0 chr12 12337238 12337542 -131944947 + AluSx SINE Alu 1 304 -8 702 214 55 33 chr12 12337542 12337616 -131944873 + MER5A DNA MER1_type 118 189 0 210 235 45 121 chr12 12337616 12337661 -131944828 + MIR3 SINE MIR 140 187 -21 1990 162 3 0 chr12 12338230 12338532 -131943957 - AluJo SINE Alu -9 303 1 2556 54 0 0 chr12 12338546 12338844 -131943645 - AluY SINE Alu -13 298 1 418 262 153 82 chr12 12339489 12339672 -131942817 + MER91A DNA MER1_type 1 196 0 2126 107 3 43 chr12 12341207 12341533 -131940956 + AluSp SINE Alu 1 313 0 238 286 111 58 chr12 12341715 12341886 -131940603 + L3 LINE CR1 1366 1545 -32 1780 167 0 11 chr12 12342071 12342358 -131940131 - AluJo SINE Alu -23 289 6 360 225 170 7 chr12 12342599 12342823 -131939666 + MER46C DNA MER2_type 2 306 -32 2656 40 0 7 chr12 12343021 12343325 -131939164 + AluY SINE Alu 1 302 -9 455 368 55 18 chr12 12343491 12343763 -131938726 - MLT1I LTR MaLR -2 407 126 375 279 55 58 chr12 12343917 12344264 -131938225 + L1MC5 LINE L1 2148 2493 -3653 390 121 18 0 chr12 12344286 12344351 -131938138 + MER58 DNA MER1_type 2355 2420 0 592 236 117 48 chr12 12344379 12344794 -131937695 + L1MC5 LINE L1 2759 7085 -876 552 311 7 7 chr12 12344795 12344943 -131937546 - MLT2E LTR ERVL -145 483 336 625 289 28 38 chr12 12344964 12345158 -131937331 - MLT2E LTR ERVL -402 226 28 3399 264 64 66 chr12 12345159 12345292 -131937197 - ERVL-E LTR ERVL -13 5751 5619 3294 121 84 6 chr12 12345292 12345781 -131936708 + MER1A DNA MER1_type 1 527 0 3399 264 64 66 chr12 12345781 12346362 -131936127 - ERVL-E LTR ERVL -145 5619 5038 2371 52 3 85 chr12 12346362 12346692 -131935797 - AluY SINE Alu -8 303 1 3399 264 64 66 chr12 12346692 12347013 -131935476 - ERVL-E LTR ERVL -726 5038 4716 2262 110 3 0 chr12 12347013 12347312 -131935177 + AluSq SINE Alu 1 300 -13 3399 264 64 66 chr12 12347312 12347618 -131934871 - ERVL-E LTR ERVL -1048 4716 4411 3018 251 21 6 chr12 12347616 12348324 -131934165 - ERVL-E LTR ERVL -1955 3809 3091 * 682 288 31 3 chr12 12348321 12348675 -131933814 - ERVL-E LTR ERVL -2677 2977 2624 * 2625 276 78 33 chr12 12348685 12348837 -131933652 - ERVL-E LTR ERVL -3382 2382 2238 2100 137 36 39 chr12 12348837 12349201 -131933288 + THE1B LTR MaLR 1 363 -1 2625 276 78 33 chr12 12349201 12349740 -131932749 - ERVL-E LTR ERVL -3526 2238 1633 1570 144 0 12 chr12 12349740 12350003 -131932486 - AluSx SINE Alu 0 303 44 2625 276 78 33 chr12 12350003 12350273 -131932216 - ERVL-E LTR ERVL -4131 1633 1376 222 86 57 0 chr12 12350273 12350308 -131932181 + CT-rich Low_complexity Low_complexity 2 38 0 213 175 0 0 chr12 12350311 12350351 -131932138 + C-rich Low_complexity Low_complexity 5 44 0 716 259 0 6 chr12 12350390 12350556 -131931933 - FRAM SINE Alu -1 165 1 257 297 108 9 chr12 12350559 12350670 -131931819 - ERVL-E LTR ERVL -4377 1387 1266 246 32 0 0 chr12 12350748 12350779 -131931710 + (TG)n Simple_repeat Simple_repeat 1 31 0 2856 174 11 43 chr12 12350834 12351363 -131931126 + MLT2B1 LTR ERVL 1 512 -8 1382 249 36 10 chr12 12351763 12352217 -131930272 + MLT2F LTR ERVL 1 504 -159 216 0 0 0 chr12 12352268 12352292 -131930197 + (CA)n Simple_repeat Simple_repeat 2 25 0 2145 133 0 7 chr12 12352642 12352951 -131929538 - AluSg1 SINE Alu -1 308 2 349 286 75 28 chr12 12353063 12353318 -131929171 + L1MCc LINE L1 37 303 -6120 270 276 53 79 chr12 12353709 12353937 -131928552 + L1MCc LINE L1 1129 1350 -5073 2349 80 0 39 chr12 12353941 12354253 -131928236 + AluY SINE Alu 1 300 -11 1836 95 46 8 chr12 12354284 12354546 -131927943 + AluY SINE Alu 1 272 -39 1735 280 69 28 chr12 12354546 12354647 -131927842 + L1MCc LINE L1 1783 1878 -5244 457 176 176 0 chr12 12354647 12354755 -131927734 + FLAM_C SINE Alu 4 130 -3 1735 280 69 28 chr12 12354755 12355758 -131926731 + L1MCc LINE L1 1878 2932 -4190 4951 143 47 17 chr12 12355762 12356658 -131925831 + Cheshire DNA MER1_type 1498 2420 0 319 230 63 24 chr12 12356816 12356942 -131925547 - MIR SINE MIR 0 262 132 2319 61 44 7 chr12 12357054 12357351 -131925138 + AluY SINE Alu 1 308 -3 21 0 0 0 chr12 12357876 12357897 -131924592 + AT_rich Low_complexity Low_complexity 1 21 0 34 85 0 23 chr12 12358760 12358890 -131923599 + GC_rich Low_complexity Low_complexity 1 127 0 25 31 0 0 chr12 12359089 12359121 -131923368 + GC_rich Low_complexity Low_complexity 1 32 0 184 89 22 44 chr12 12359233 12359278 -131923211 + (CCCCG)n Simple_repeat Simple_repeat 3 46 0 240 59 0 0 chr12 12359786 12359820 -131922669 + (A)n Simple_repeat Simple_repeat 1 34 0 185 316 120 8 chr12 12362807 12362924 -131919565 + L2 LINE L2 3142 3271 -1 2205 107 3 3 chr12 12363126 12363417 -131919072 - AluSx SINE Alu -20 292 2 302 296 95 28 chr12 12363578 12363757 -131918732 - MIR3 SINE MIR 0 208 18 297 167 0 0 chr12 12365316 12365370 -131917119 + CT-rich Low_complexity Low_complexity 1 54 0 624 272 30 65 chr12 12365385 12365617 -131916872 - MIR SINE MIR -9 253 30 228 367 73 7 chr12 12366471 12366621 -131915868 - MIR3 SINE MIR -30 178 19 226 231 216 15 chr12 12367247 12367381 -131915108 + MIR SINE MIR 20 180 -82 315 290 12 99 chr12 12367462 12367537 -131914952 - MIR3 SINE MIR -24 184 129 2105 129 3 0 chr12 12367537 12367839 -131914650 - AluSx SINE Alu -9 303 1 315 290 12 99 chr12 12367839 12367925 -131914564 - MIR3 SINE MIR -79 129 37 1510 149 51 4 chr12 12369231 12369507 -131912982 + L1MA4 LINE L1 6009 6297 -3 2395 78 20 0 chr12 12369627 12369921 -131912568 + AluSx SINE Alu 1 300 -12 1724 154 7 18 chr12 12370317 12370597 -131911892 - AluJo SINE Alu -35 277 1 276 30 0 0 chr12 12373062 12373095 -131909394 + (TG)n Simple_repeat Simple_repeat 2 34 0 1612 151 70 15 chr12 12374328 12374599 -131907890 - AluSx SINE Alu -22 290 5 322 318 56 8 chr12 12374772 12374898 -131907591 + L2 LINE L2 3178 3309 -4 211 258 30 15 chr12 12376453 12376519 -131905970 + L2 LINE L2 3238 3304 -9 1799 168 13 10 chr12 12376833 12377001 -131905488 - AluJo SINE Alu -8 304 133 2256 116 0 0 chr12 12377001 12377304 -131905185 - AluSg1 SINE Alu -6 303 1 1799 168 13 10 chr12 12377304 12377438 -131905051 - AluJo SINE Alu -179 133 1 630 193 18 12 chr12 12378615 12378781 -131903708 + CT-rich Low_complexity Low_complexity 3 169 0 944 217 50 4 chr12 12380689 12380929 -131901560 + L1MA4 LINE L1 6048 6298 -2 328 245 21 21 chr12 12380986 12381080 -131901409 - MIR SINE MIR -81 127 34 423 0 0 0 chr12 12383920 12383967 -131898522 + (TG)n Simple_repeat Simple_repeat 2 48 0 1731 186 0 10 chr12 12384834 12385129 -131897360 + AluJo SINE Alu 1 292 -20 274 231 7 14 chr12 12385129 12385268 -131897221 + GA-rich Low_complexity Low_complexity 1 138 0 305 255 69 29 chr12 12387012 12387114 -131895375 + MIR SINE MIR 68 173 -89 2197 164 98 39 chr12 12387909 12388391 -131894098 - MLT2B1 LTR ERVL -10 510 1 202 164 75 45 chr12 12389289 12389356 -131893133 + MIR SINE MIR 77 145 -63 7118 46 17 26 chr12 12390863 12392265 -131890224 - L1PA7 LINE L1 0 6154 4767 1865 131 44 0 chr12 12392373 12392648 -131889841 - AluSx SINE Alu -25 287 1 307 255 53 0 chr12 12393363 12393457 -131889032 + HsTC2 DNA Tc2 1583 1681 -217 735 229 62 65 chr12 12393784 12394090 -131888399 - L1MC5 LINE L1 -44 7917 7613 183 301 119 34 chr12 12394160 12394396 -131888093 - L2 LINE L2 -108 3205 2950 189 107 0 0 chr12 12394627 12394655 -131887834 + (A)n Simple_repeat Simple_repeat 1 28 0 2025 103 39 4 chr12 12395841 12396122 -131886367 - AluSx SINE Alu -21 291 1 1903 156 7 7 chr12 12396186 12396488 -131886001 - AluSx SINE Alu -6 306 5 1521 111 12 83 chr12 12396530 12396782 -131885707 - AluSx SINE Alu -77 235 2 621 284 36 40 chr12 12397203 12397453 -131885036 - MIR SINE MIR 0 262 14 315 71 0 0 chr12 12398726 12398768 -131883721 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 937 196 0 0 chr12 12399749 12399902 -131882587 + FRAM SINE Alu 1 153 -23 2089 111 7 0 chr12 12399911 12400215 -131882274 + AluSx SINE Alu 1 306 0 1731 178 31 14 chr12 12400250 12400604 -131881885 - MLT1A1 LTR MaLR -5 360 1 484 291 56 80 chr12 12400842 12401144 -131881345 - L1ME3A LINE L1 -234 5936 5665 2857 124 7 19 chr12 12401313 12401739 -131880750 + MSTC LTR MaLR 3 423 -5 1806 146 44 0 chr12 12402074 12402349 -131880140 + AluJb SINE Alu 1 287 -25 28 0 0 0 chr12 12402352 12402380 -131880109 + AT_rich Low_complexity Low_complexity 1 28 0 311 265 83 38 chr12 12403484 12403616 -131878873 + MIR SINE MIR 7 144 -118 335 315 0 9 chr12 12405212 12405320 -131877169 - MIR3 SINE MIR -1 207 101 254 181 239 36 chr12 12405324 12405462 -131877027 - MER34B LTR ERV1 0 565 400 503 217 98 27 chr12 12405482 12405666 -131876823 + L2 LINE L2 3117 3313 0 697 248 6 0 chr12 12405672 12405833 -131876656 + MIR SINE MIR 88 249 -13 1968 138 10 7 chr12 12405841 12406145 -131876344 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr12 12406153 12406174 -131876315 + AT_rich Low_complexity Low_complexity 1 21 0 279 328 101 8 chr12 12406178 12406297 -131876192 + L2 LINE L2 3143 3272 0 241 292 33 42 chr12 12406765 12406885 -131875604 + MIR3 SINE MIR 87 205 -3 1909 199 80 3 chr12 12407563 12407925 -131874564 - MLT1E LTR MaLR -1 592 203 683 220 48 48 chr12 12408094 12408303 -131874186 - MIR SINE MIR -26 236 28 2505 121 69 48 chr12 12409467 12409547 -131872942 - Tigger2 DNA MER2_type 0 2718 2641 1534 150 40 0 chr12 12409547 12409800 -131872689 - L1PB4 LINE L1 -13 6143 5881 2505 121 69 48 chr12 12409800 12410156 -131872333 - Tigger2 DNA MER2_type -77 2641 2273 397 183 28 0 chr12 12410142 12410213 -131872276 - Tigger2 DNA MER2_type -2645 73 1 * 214 195 0 0 chr12 12410373 12410414 -131872075 + T-rich Low_complexity Low_complexity 1 41 0 1890 147 49 3 chr12 12410424 12410771 -131871718 - L1MB3 LINE L1 -7 6176 5814 1747 169 0 4 chr12 12412143 12412422 -131870067 + AluJb SINE Alu 17 294 -18 189 224 17 103 chr12 12413076 12413134 -131869355 + L3 LINE CR1 1512 1564 -13 388 283 20 53 chr12 12413386 12413538 -131868951 + L2 LINE L2 3163 3309 -4 226 274 0 0 chr12 12413589 12413640 -131868849 + GA-rich Low_complexity Low_complexity 2 52 0 2164 109 17 7 chr12 12413655 12413949 -131868540 - AluSx SINE Alu -15 297 1 24 32 0 0 chr12 12413962 12413993 -131868496 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr12 12414079 12414101 -131868388 + (TG)n Simple_repeat Simple_repeat 1 22 0 1135 197 67 47 chr12 12414143 12414442 -131868047 + L1MA9 LINE L1 5793 6097 -215 317 230 122 54 chr12 12415528 12415676 -131866813 - MIR SINE MIR -56 206 49 234 150 0 0 chr12 12418634 12418674 -131863815 + (TCTCC)n Simple_repeat Simple_repeat 4 43 0 752 199 8 0 chr12 12418674 12418805 -131863684 - FLAM_A SINE Alu -1 132 1 1873 173 53 60 chr12 12418879 12419295 -131863194 + MLT2D LTR ERVL 2 414 0 386 301 38 2 chr12 12419685 12419875 -131862614 - MIR SINE MIR -13 249 17 183 344 31 0 chr12 12421680 12421744 -131860745 + MIR SINE MIR 34 99 -109 1587 162 196 9 chr12 12421803 12422149 -131860340 - MLT2D LTR ERVL 0 414 4 693 279 47 39 chr12 12422777 12423031 -131859458 + L2 LINE L2 2882 3137 -176 692 204 52 17 chr12 12423072 12423244 -131859245 + MER5B DNA MER1_type 1 178 0 427 242 50 0 chr12 12423387 12423486 -131859003 + L2 LINE L2 3209 3312 -1 198 0 0 0 chr12 12423959 12423981 -131858508 + (A)n Simple_repeat Simple_repeat 1 22 0 205 345 24 0 chr12 12424575 12424659 -131857830 - MIR3 SINE MIR -24 184 99 517 261 106 14 chr12 12424709 12424918 -131857571 - MIR SINE MIR -33 229 4 2190 61 104 0 chr12 12425387 12425666 -131856823 + AluY SINE Alu 1 308 -3 206 325 0 0 chr12 12425961 12426038 -131856451 + MIR3 SINE MIR 125 201 -7 754 207 5 69 chr12 12427671 12427789 -131854700 - MER45A DNA AcHobo -1403 178 75 1329 149 146 38 chr12 12427789 12428050 -131854439 + AluJb SINE Alu 1 289 -23 754 207 5 69 chr12 12428050 12428119 -131854370 - MER45A DNA AcHobo -1506 75 3 353 277 71 115 chr12 12429617 12429766 -131852723 + MIR SINE MIR 15 150 -112 5185 129 56 16 chr12 12429766 12431019 -131851470 + L1PA16 LINE L1 4873 6166 0 353 277 71 115 chr12 12431019 12431122 -131851367 + MIR SINE MIR 150 256 -6 651 200 133 0 chr12 12432146 12432311 -131850178 - MER5A DNA MER1_type 0 189 3 752 247 54 31 chr12 12432332 12432555 -131849934 + MIR SINE MIR 28 255 -7 313 264 11 0 chr12 12432589 12432676 -131849813 - MIR SINE MIR -1 261 174 180 352 0 0 chr12 12432883 12432937 -131849552 + L2 LINE L2 3215 3268 -4 201 327 10 59 chr12 12433812 12433913 -131848576 - L2 LINE L2 -23 3290 3195 2758 123 14 7 chr12 12434881 12435310 -131847179 + MSTB1 LTR MaLR 1 432 0 1826 152 28 0 chr12 12435803 12436086 -131846403 + AluJo SINE Alu 1 291 -21 383 270 86 26 chr12 12436205 12436357 -131846132 - MIR SINE MIR -71 191 31 2321 100 0 3 chr12 12437118 12437428 -131845061 - AluSx SINE Alu -3 309 1 2108 133 21 6 chr12 12437602 12437933 -131844556 + MER1B DNA MER1_type 1 336 -1 565 209 27 9 chr12 12441204 12441314 -131841175 - MER81 DNA DNA 0 114 3 272 250 148 0 chr12 12441638 12441726 -131840763 + MIR3 SINE MIR 84 184 -24 213 309 106 32 chr12 12442259 12442382 -131840107 + MIR SINE MIR 29 160 -102 2488 85 0 0 chr12 12442433 12442740 -131839749 + AluY SINE Alu 1 307 -4 1288 152 0 0 chr12 12443634 12443818 -131838671 + AluJo SINE Alu 3 186 -126 246 128 0 0 chr12 12443824 12443863 -131838626 + (A)n Simple_repeat Simple_repeat 1 39 0 711 231 67 29 chr12 12443938 12444176 -131838313 - MIR SINE MIR -14 248 2 234 0 0 0 chr12 12444394 12444420 -131838069 + (T)n Simple_repeat Simple_repeat 1 26 0 271 303 112 39 chr12 12444819 12444892 -131837597 + MIR SINE MIR 10 76 -186 189 0 0 0 chr12 12444892 12444913 -131837576 + (ATG)n Simple_repeat Simple_repeat 2 22 0 2342 81 7 3 chr12 12444913 12445208 -131837281 - AluSq SINE Alu -17 296 1 271 303 112 39 chr12 12445208 12445367 -131837122 + MIR SINE MIR 75 256 -6 251 327 39 29 chr12 12445386 12445490 -131836999 + L2 LINE L2 3132 3236 -36 322 297 83 35 chr12 12445531 12445676 -131836813 - L2 LINE L2 -2 3270 3119 393 294 46 0 chr12 12446206 12446315 -131836174 - L2 LINE L2 0 3313 3200 437 140 8 0 chr12 12447482 12447603 -131834886 + CT-rich Low_complexity Low_complexity 1 121 0 1768 131 47 24 chr12 12447605 12447903 -131834586 - AluJb SINE Alu -2 310 6 250 209 76 57 chr12 12448666 12448771 -131833718 + Charlie5 DNA MER1_type 3 109 -2503 1740 186 41 3 chr12 12448780 12449145 -131833344 + Charlie5 DNA MER1_type 2244 2622 0 21 0 0 0 chr12 12449997 12450018 -131832471 + AT_rich Low_complexity Low_complexity 1 21 0 462 208 146 14 chr12 12451153 12451297 -131831192 - MER5B DNA MER1_type 0 178 16 2219 135 0 3 chr12 12452095 12452407 -131830082 - AluJb SINE Alu -1 311 1 251 316 198 24 chr12 12454519 12454858 -131827631 - L3 LINE CR1 -1 1576 1179 273 247 55 0 chr12 12455657 12455730 -131826759 + MIR SINE MIR 120 196 -66 180 0 0 0 chr12 12456090 12456110 -131826379 + (T)n Simple_repeat Simple_repeat 1 20 0 510 17 0 0 chr12 12458582 12458641 -131823848 + (CA)n Simple_repeat Simple_repeat 1 59 0 234 62 0 0 chr12 12460083 12460115 -131822374 + (T)n Simple_repeat Simple_repeat 1 32 0 510 258 0 39 chr12 12463467 12463622 -131818867 - L2 LINE L2 0 3313 3165 210 331 181 19 chr12 12463785 12463945 -131818544 + MIR3 SINE MIR 16 201 -7 654 287 44 28 chr12 12464093 12464344 -131818145 - MIR SINE MIR -1 261 7 204 40 0 0 chr12 12464374 12464399 -131818090 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 12466757 12466779 -131815710 + AT_rich Low_complexity Low_complexity 1 22 0 249 296 82 7 chr12 12466790 12466925 -131815564 - MIR SINE MIR -52 210 66 22 35 0 0 chr12 12468450 12468479 -131814010 + AT_rich Low_complexity Low_complexity 1 29 0 381 223 0 0 chr12 12470159 12470253 -131812236 + (TATATG)n Simple_repeat Simple_repeat 1 94 0 273 274 105 0 chr12 12470306 12470401 -131812088 - MIR SINE MIR -139 123 19 277 363 44 19 chr12 12470960 12471120 -131811369 + MIR3 SINE MIR 21 184 -24 529 249 113 0 chr12 12474064 12474241 -131808248 - MIR SINE MIR 0 262 66 502 258 54 36 chr12 12476408 12476575 -131805914 + MIR SINE MIR 20 189 -73 487 311 25 20 chr12 12476789 12476985 -131805504 + MIR3 SINE MIR 2 198 -10 594 269 73 27 chr12 12477591 12477810 -131804679 - MIR SINE MIR -14 248 20 1039 144 0 13 chr12 12480053 12480206 -131802283 + FRAM SINE Alu 14 164 -12 243 263 162 10 chr12 12481138 12481237 -131801252 + MIR SINE MIR 16 129 -79 2396 95 3 0 chr12 12482199 12482504 -131799985 + AluY SINE Alu 1 306 -5 36 0 0 0 chr12 12482595 12482631 -131799858 + AT_rich Low_complexity Low_complexity 1 36 0 206 294 98 0 chr12 12484637 12484729 -131797760 - L2 LINE L2 -4 3268 3168 414 264 24 32 chr12 12484775 12484900 -131797589 - L2 LINE L2 -9 3263 3140 773 173 0 0 chr12 12485699 12485832 -131796657 - FLAM_C SINE Alu 0 133 1 294 330 18 0 chr12 12486006 12486115 -131796374 + L1ME4a LINE L1 5554 5664 -457 272 265 109 0 chr12 12486177 12486244 -131796245 + L1ME4a LINE L1 5765 5823 -298 2554 62 0 7 chr12 12486244 12486552 -131795937 + AluY SINE Alu 1 306 -5 272 265 109 0 chr12 12486552 12486631 -131795858 + L1ME4a LINE L1 5823 5927 -194 231 246 68 25 chr12 12486638 12486756 -131795733 + L1ME4a LINE L1 5961 6083 -38 199 333 103 16 chr12 12487202 12487328 -131795161 + L2 LINE L2 3136 3272 0 381 312 22 0 chr12 12487424 12487562 -131794927 + MIR SINE MIR 110 250 -12 236 222 0 100 chr12 12489699 12489789 -131792700 - LTR67 LTR ERVL -13 544 464 394 347 89 8 chr12 12490480 12490728 -131791761 - L3 LINE CR1 -12 1565 1298 457 291 171 27 chr12 12490942 12491234 -131791255 - L3 LINE CR1 -668 909 576 421 314 169 39 chr12 12492414 12493055 -131789434 - L2 LINE L2 -1116 2198 1475 266 44 0 44 chr12 12493116 12493161 -131789328 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 274 250 15 0 chr12 12493369 12493437 -131789052 - L2 LINE L2 -3 3269 3201 2140 70 9 98 chr12 12493437 12493764 -131788725 + AluSx SINE Alu 1 298 -14 583 268 79 77 chr12 12493782 12493997 -131788492 - L2 LINE L2 -312 3001 2785 1594 167 37 40 chr12 12493997 12494296 -131788193 - AluJo SINE Alu -14 298 1 583 268 79 77 chr12 12494296 12494504 -131787985 - L2 LINE L2 -528 2785 2579 * 1119 239 115 19 chr12 12494499 12494863 -131787626 + L2 LINE L2 2911 3309 -4 207 306 0 0 chr12 12495970 12496032 -131786457 + MIR3 SINE MIR 143 204 -4 191 185 0 111 chr12 12496265 12496319 -131786170 - MIR3 SINE MIR -17 191 144 1137 198 71 14 chr12 12496527 12496844 -131785645 + MER33 DNA MER1_type 1 324 0 319 279 23 0 chr12 12496888 12496974 -131785515 - MIR SINE MIR -116 146 59 3436 230 200 68 chr12 12497865 12498310 -131784179 - HAL1 LINE L1 -31 2476 2091 2074 99 0 4 chr12 12498310 12498611 -131783878 - AluSg SINE Alu 0 311 12 3436 230 200 68 chr12 12498611 12499971 -131782518 - HAL1 LINE L1 -416 2091 338 2205 103 13 10 chr12 12499971 12500271 -131782218 - AluSx SINE Alu -11 301 1 3436 230 200 68 chr12 12500271 12500619 -131781870 - HAL1 LINE L1 -2169 338 37 210 245 0 0 chr12 12501108 12501161 -131781328 + MER5B DNA MER1_type 2 54 -124 2442 88 0 0 chr12 12501700 12501995 -131780494 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr12 12502363 12502384 -131780105 + AT_rich Low_complexity Low_complexity 1 21 0 575 229 28 0 chr12 12502457 12502601 -131779888 - MIR SINE MIR 0 262 115 200 226 38 113 chr12 12502832 12502938 -131779551 - MIR SINE MIR -140 122 25 22 0 0 0 chr12 12504478 12504500 -131777989 + AT_rich Low_complexity Low_complexity 1 22 0 619 260 62 10 chr12 12505034 12505226 -131777263 + MIR SINE MIR 53 254 -8 288 290 161 0 chr12 12505699 12505792 -131776697 - MIR SINE MIR -71 137 30 1122 162 0 57 chr12 12506053 12506281 -131776208 - AluJo SINE Alu 0 312 98 297 417 40 0 chr12 12507329 12507480 -131775009 - L2 LINE L2 -9 3263 3107 1020 178 51 14 chr12 12509056 12509270 -131773219 - AluJo SINE Alu -4 308 87 2105 156 92 21 chr12 12509567 12509990 -131772499 - L1MA8 LINE L1 -5 6286 5834 623 136 7 116 chr12 12510079 12510226 -131772263 + FLAM_A SINE Alu 1 131 -2 203 178 22 0 chr12 12513200 12513245 -131769244 + (CAT)n Simple_repeat Simple_repeat 2 47 0 412 273 83 0 chr12 12513380 12513501 -131768988 - L2 LINE L2 -4 3309 3179 924 296 25 15 chr12 12513537 12514014 -131768475 + L2 LINE L2 2670 3149 -164 738 245 53 67 chr12 12514446 12514728 -131767761 - HAL1 LINE L1 -2193 314 37 241 370 9 0 chr12 12514837 12514945 -131767544 - L2 LINE L2 -245 3027 2919 1468 167 84 57 chr12 12517654 12517989 -131764500 - MER2 DNA MER2_type 0 344 1 1950 145 0 7 chr12 12518173 12518470 -131764019 + AluJb SINE Alu 1 295 -17 240 342 0 26 chr12 12518520 12518675 -131763814 + GA-rich Low_complexity Low_complexity 3 153 0 2307 117 0 0 chr12 12519105 12519412 -131763077 - AluY SINE Alu -4 307 1 334 333 48 12 chr12 12520093 12520261 -131762228 - L3 LINE CR1 -16 1561 1388 432 249 193 5 chr12 12520979 12521176 -131761313 - MIR SINE MIR -6 256 23 195 129 0 0 chr12 12522875 12522906 -131759583 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 300 298 72 82 chr12 12524448 12524637 -131757852 - MIR SINE MIR -55 207 22 326 352 34 34 chr12 12524776 12524952 -131757537 + MIR SINE MIR 37 212 -50 231 311 199 0 chr12 12525356 12525517 -131756972 - L2 LINE L2 -347 2967 2775 2145 86 7 7 chr12 12525536 12525838 -131756651 - AluY SINE Alu -9 302 1 580 313 85 22 chr12 12526328 12526552 -131755937 + MIR SINE MIR 8 245 -17 197 305 106 40 chr12 12527211 12527437 -131755052 - L2 LINE L2 -224 3048 2808 1915 124 0 44 chr12 12527528 12527843 -131754646 + AluSx SINE Alu 1 301 -11 187 319 124 12 chr12 12528361 12528530 -131753959 + L2 LINE L2 1688 1875 -1439 1184 334 92 15 chr12 12528694 12529284 -131753205 + L2 LINE L2 2175 2809 -505 959 259 19 8 chr12 12529294 12529553 -131752936 - MIR SINE MIR 0 262 1 2132 245 72 44 chr12 12529575 12530374 -131752115 - L2 LINE L2 -2 3311 2455 2226 99 0 13 chr12 12530374 12530688 -131751801 + AluY SINE Alu 1 310 -1 2132 245 72 44 chr12 12530688 12530847 -131751642 - L2 LINE L2 -858 2455 2302 1459 155 23 59 chr12 12530848 12531152 -131751337 + AluJo SINE Alu 1 293 -19 188 330 47 19 chr12 12531212 12531318 -131751171 + L2 LINE L2 2862 2970 -302 1945 129 3 3 chr12 12532755 12533058 -131749431 - AluSg SINE Alu -7 303 1 2197 91 24 0 chr12 12533790 12534087 -131748402 + AluSx SINE Alu 1 304 -8 305 268 98 58 chr12 12534456 12534680 -131747809 + L1 LINE L1 3068 3300 -2846 640 211 114 57 chr12 12534761 12534988 -131747501 - MLT1D LTR MaLR -258 247 8 193 216 0 0 chr12 12534995 12535032 -131747457 - MIR SINE MIR -173 89 53 1729 169 13 7 chr12 12535127 12535429 -131747060 - AluJo SINE Alu -8 304 1 378 0 0 0 chr12 12536364 12536406 -131746083 + (CA)n Simple_repeat Simple_repeat 1 42 0 691 180 29 35 chr12 12538107 12538279 -131744210 - MER96B DNA MER1_type? -246 171 1 705 289 72 8 chr12 12538565 12538800 -131743689 - MIR SINE MIR -8 254 5 224 200 44 0 chr12 12539693 12539738 -131742751 + MIR SINE MIR 85 131 -77 294 98 0 0 chr12 12540483 12540534 -131741955 + (TG)n Simple_repeat Simple_repeat 2 52 0 2026 120 3 0 chr12 12540534 12540818 -131741671 - AluSx SINE Alu -27 285 1 392 283 114 12 chr12 12540827 12540993 -131741496 - L1ME4a LINE L1 -4 6117 5935 461 270 183 18 chr12 12541001 12541275 -131741214 - L1ME4a LINE L1 -265 5856 5538 741 366 115 35 chr12 12541621 12542422 -131740067 + L3 LINE CR1 2 866 -711 185 367 0 0 chr12 12542468 12542528 -131739961 - MIR SINE MIR -3 259 200 180 273 0 0 chr12 12542557 12542601 -131739888 - L3 LINE CR1 -863 714 671 412 225 0 0 chr12 12542632 12542712 -131739777 - MIR SINE MIR -113 149 70 954 230 48 44 chr12 12542835 12543083 -131739406 + MIR SINE MIR 12 260 -2 298 271 246 0 chr12 12543097 12543219 -131739270 + MIR SINE MIR 2 153 -109 283 341 260 0 chr12 12543271 12543479 -131739010 + L3 LINE CR1 993 1254 -323 220 329 0 12 chr12 12543783 12543865 -131738624 + MIR SINE MIR 132 212 -50 591 258 25 21 chr12 12544107 12544295 -131738194 - MIR3 SINE MIR -5 203 12 997 176 96 59 chr12 12545116 12545355 -131737134 + MIR SINE MIR 3 250 -12 2013 184 73 14 chr12 12547111 12547605 -131734884 - Charlie1b DNA MER1_type 0 523 1 1860 162 0 0 chr12 12548892 12549189 -131733300 + AluJb SINE Alu 1 297 -15 2715 13 0 0 chr12 12551094 12551402 -131731087 + AluYa5 SINE Alu 1 308 -3 359 282 39 39 chr12 12551725 12551881 -131730608 + L2 LINE L2 3152 3307 -6 296 379 63 19 chr12 12551906 12552112 -131730377 - L2 LINE L2 -527 2787 2573 199 255 248 33 chr12 12552143 12552296 -131730193 - L2 LINE L2 -902 2412 2227 253 287 30 10 chr12 12552693 12552794 -131729695 + MIR3 SINE MIR 87 189 -19 2226 99 3 0 chr12 12554103 12554406 -131728083 - AluSc SINE Alu -5 304 1 2218 101 0 3 chr12 12554988 12555296 -131727193 + AluSg SINE Alu 1 307 -3 256 338 43 7 chr12 12555766 12556006 -131726483 + L1ME4a LINE L1 5550 5802 -344 1163 71 0 0 chr12 12556143 12556298 -131726191 - AluY SINE Alu -2 309 155 1008 301 203 19 chr12 12556328 12557199 -131725290 - L2 LINE L2 -660 2654 1624 549 310 29 73 chr12 12557406 12557651 -131724838 - MIR SINE MIR -9 253 20 350 182 234 0 chr12 12557979 12558056 -131724433 - MER69 DNA AcHobo -1131 95 1 21 36 0 0 chr12 12558336 12558364 -131724125 + AT_rich Low_complexity Low_complexity 1 28 0 1772 146 7 4 chr12 12558389 12558692 -131723797 - AluJb SINE Alu 0 304 1 565 326 113 34 chr12 12558796 12559124 -131723365 + L3 LINE CR1 1212 1565 -12 219 69 0 0 chr12 12559827 12559856 -131722633 + (TGG)n Simple_repeat Simple_repeat 3 31 0 572 345 0 0 chr12 12559862 12560033 -131722456 - MIR SINE MIR -3 259 89 327 284 204 25 chr12 12560215 12560377 -131722112 - MIR SINE MIR -30 232 42 306 250 92 50 chr12 12562091 12562185 -131720304 + L1ME4a LINE L1 5993 6095 -26 1821 158 0 0 chr12 12562185 12562476 -131720013 + AluJb SINE Alu 1 291 -21 306 250 92 50 chr12 12562476 12562501 -131719988 + L1ME4a LINE L1 6095 6117 -4 221 320 97 0 chr12 12562562 12562665 -131719824 + L2 LINE L2 3155 3267 -5 217 267 0 0 chr12 12562942 12562987 -131719502 - L2 LINE L2 -5 3308 3264 3691 109 11 9 chr12 12563165 12563689 -131718800 - MER1A DNA MER1_type 0 527 3 2263 54 0 34 chr12 12564294 12564590 -131717899 + AluY SINE Alu 1 286 -25 285 146 0 0 chr12 12566231 12566279 -131716210 + (TAGG)n Simple_repeat Simple_repeat 1 48 0 313 259 0 0 chr12 12566827 12566912 -131715577 + MER94 DNA DNA 1 85 -49 392 269 94 20 chr12 12567010 12567159 -131715330 + MIR3 SINE MIR 33 192 -16 32 0 0 0 chr12 12567667 12567699 -131714790 + AT_rich Low_complexity Low_complexity 1 32 0 2562 55 0 0 chr12 12568404 12568715 -131713774 - AluY SINE Alu 0 311 1 926 253 66 12 chr12 12568737 12568978 -131713511 - MIR SINE MIR 0 262 9 567 276 69 0 chr12 12569660 12569805 -131712684 + MIR SINE MIR 39 193 -69 403 109 0 0 chr12 12569805 12569869 -131712620 + Alu SINE Alu 248 311 0 211 210 210 0 chr12 12569869 12569931 -131712558 + MIR SINE MIR 187 261 -1 495 110 99 0 chr12 12569988 12570079 -131712410 - L1MB2 LINE L1 -2 6169 6070 2475 128 73 14 chr12 12571656 12572095 -131710394 - MLT1C LTR MaLR 0 467 3 1081 213 84 60 chr12 12574054 12574243 -131708246 - L1MC5 LINE L1 -51 7910 7727 2474 57 0 0 chr12 12574243 12574543 -131707946 + AluY SINE Alu 1 300 -11 1081 213 84 60 chr12 12574543 12574771 -131707718 - L1MC5 LINE L1 -234 7727 7483 25 0 0 0 chr12 12574850 12574875 -131707614 + AT_rich Low_complexity Low_complexity 1 25 0 217 134 0 82 chr12 12574884 12575018 -131707471 + (TA)n Simple_repeat Simple_repeat 1 123 0 1358 242 103 49 chr12 12575026 12575839 -131706650 - L1MEc LINE L1 -4761 1495 659 440 308 71 16 chr12 12576311 12576493 -131705996 - L1MEc LINE L1 -5860 345 154 492 285 30 30 chr12 12576504 12576704 -131705785 - L1MC4a LINE L1 -1867 5941 5742 535 274 51 13 chr12 12577520 12577677 -131704812 + MIR SINE MIR 19 181 -81 1250 136 0 0 chr12 12577699 12577875 -131704614 - AluSg/x SINE Alu 0 312 137 207 228 0 18 chr12 12577919 12577976 -131704513 + (TTA)n Simple_repeat Simple_repeat 1 56 0 2500 70 0 0 chr12 12578228 12578530 -131703959 + AluY SINE Alu 1 302 -9 316 339 15 0 chr12 12579947 12580077 -131702412 - L2 LINE L2 -3 3310 3179 188 200 80 20 chr12 12580140 12580190 -131702299 - MIR SINE MIR -7 255 203 2293 72 31 7 chr12 12580472 12580764 -131701725 - AluY SINE Alu -12 299 1 351 265 22 81 chr12 12580940 12581125 -131701364 + L1MC5 LINE L1 7744 7917 -44 216 163 20 0 chr12 12581463 12581512 -131700977 - MIR SINE MIR -77 131 82 2214 113 13 7 chr12 12581769 12582070 -131700419 - AluSx SINE Alu -9 303 1 254 231 0 0 chr12 12582464 12582516 -131699973 + MIR3 SINE MIR 144 195 -13 194 318 80 40 chr12 12583143 12583294 -131699195 - L2 LINE L2 -213 3059 2903 2193 124 0 3 chr12 12583368 12583666 -131698823 + AluSx SINE Alu 1 297 -15 231 174 0 0 chr12 12583667 12583713 -131698776 + LTR66 LTR ERVL 394 439 -171 377 307 0 11 chr12 12583713 12583889 -131698600 + (TATATG)n Simple_repeat Simple_repeat 2 175 0 304 315 0 0 chr12 12583900 12583989 -131698500 + L1MC4 LINE L1 6615 6703 -1339 2076 17 12 0 chr12 12584067 12584308 -131698181 + L1PA4 LINE L1 5912 6155 0 1046 212 9 28 chr12 12585011 12585228 -131697261 + MER58A DNA MER1_type 12 224 0 248 203 62 16 chr12 12585534 12585598 -131696891 - L2 LINE L2 0 3313 3247 22 0 0 0 chr12 12586554 12586576 -131695913 + AT_rich Low_complexity Low_complexity 1 22 0 193 284 74 0 chr12 12587019 12587114 -131695375 + MIR SINE MIR 105 206 -56 875 171 82 0 chr12 12588141 12588311 -131694178 - MER20 DNA MER1_type 0 219 36 237 65 0 0 chr12 12589284 12589315 -131693174 + (A)n Simple_repeat Simple_repeat 1 31 0 1538 188 4 22 chr12 12590221 12590497 -131691992 - AluJo SINE Alu -41 271 1 1539 191 64 9 chr12 12590636 12590981 -131691508 - MLT1A1 LTR MaLR -1 364 1 477 326 62 4 chr12 12591654 12591881 -131690608 + MIR SINE MIR 23 262 0 306 330 31 0 chr12 12591916 12592013 -131690476 - MIR SINE MIR -84 178 79 211 171 0 24 chr12 12592195 12592236 -131690253 + MIR SINE MIR 85 124 -84 2445 96 0 3 chr12 12592537 12592850 -131689639 - AluSx SINE Alu 0 312 1 245 258 32 0 chr12 12593527 12593589 -131688900 + MIR3 SINE MIR 101 164 -44 841 239 35 31 chr12 12595651 12595906 -131686583 - MER112 DNA MER1_type 0 256 1 369 350 9 22 chr12 12596468 12596691 -131685798 + L2 LINE L2 2137 2356 -958 2586 75 0 0 chr12 12596722 12597029 -131685460 + AluSc SINE Alu 1 307 -2 995 104 6 49 chr12 12597632 12597648 -131684841 - AluJo/FRAM SINE Alu 0 312 297 1843 170 3 25 chr12 12597648 12597965 -131684524 - AluSx SINE Alu -2 310 1 995 104 6 49 chr12 12597965 12598111 -131684378 - AluJo/FRAM SINE Alu -15 297 157 398 117 0 17 chr12 12598127 12598187 -131684302 - MER46B DNA MER2_type 0 236 178 189 0 0 0 chr12 12599387 12599408 -131683081 + (T)n Simple_repeat Simple_repeat 1 21 0 1682 198 10 10 chr12 12599692 12599990 -131682499 - AluJo SINE Alu -14 298 1 216 0 0 0 chr12 12600621 12600645 -131681844 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 25 31 0 0 chr12 12600711 12600743 -131681746 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr12 12601478 12601502 -131680987 + (T)n Simple_repeat Simple_repeat 1 24 0 1408 156 27 136 chr12 12602800 12603205 -131679284 + MER46B DNA MER2_type 1 236 0 264 327 30 10 chr12 12603975 12604076 -131678413 - MIR SINE MIR -57 151 49 207 69 0 0 chr12 12604536 12604565 -131677924 + (A)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr12 12604631 12604658 -131677831 + AT_rich Low_complexity Low_complexity 1 27 0 753 174 49 0 chr12 12605514 12605658 -131676831 + MER5A DNA MER1_type 39 189 0 213 188 58 29 chr12 12606037 12606106 -131676383 + L3 LINE CR1 1435 1505 -72 316 195 12 37 chr12 12606252 12606271 -131676218 - MER5A DNA MER1_type -96 93 75 2524 77 3 0 chr12 12606271 12606581 -131675908 - AluY SINE Alu 0 311 1 316 195 12 37 chr12 12606581 12606643 -131675846 - MER5A DNA MER1_type -114 75 14 188 301 159 18 chr12 12607490 12607603 -131674886 + L2 LINE L2 3184 3312 -1 2262 156 63 20 chr12 12607607 12608233 -131674256 + L1ME1 LINE L1 5054 5700 -466 1913 149 10 10 chr12 12608233 12608529 -131673960 - AluJo SINE Alu -16 296 1 2262 156 63 20 chr12 12608529 12608550 -131673939 + L1ME1 LINE L1 5700 5719 -447 1690 170 21 3 chr12 12608551 12608833 -131673656 + AluJb SINE Alu 17 303 -9 1213 97 6 0 chr12 12608834 12608999 -131673490 + AluSg/x SINE Alu 137 302 -10 708 191 0 7 chr12 12609002 12609138 -131673351 + L1ME1 LINE L1 5730 5864 -302 904 259 23 0 chr12 12609139 12609402 -131673087 + L1MB7 LINE L1 5916 6184 0 2036 141 3 0 chr12 12610126 12610423 -131672066 + AluSg SINE Alu 1 298 -12 726 233 5 34 chr12 12611175 12611381 -131671108 + MIR SINE MIR 32 231 -31 211 246 16 0 chr12 12611571 12611632 -131670857 - MIR SINE MIR -56 152 91 2319 107 0 0 chr12 12612124 12612423 -131670066 - AluSq SINE Alu -14 299 1 261 291 13 13 chr12 12613966 12614045 -131668444 + MIR SINE MIR 20 98 -164 2109 127 6 13 chr12 12614324 12614638 -131667851 + AluJo SINE Alu 1 312 0 320 319 42 14 chr12 12614777 12614921 -131667568 - MIR SINE MIR -80 182 35 327 224 224 0 chr12 12615837 12615953 -131666536 - MIR3 SINE MIR -5 203 62 256 273 31 0 chr12 12616723 12616841 -131665648 + L1MEc LINE L1 1939 2020 -4195 1299 187 23 21 chr12 12616858 12617249 -131665240 + L1MEc LINE L1 2058 2457 -3758 322 313 135 60 chr12 12617560 12617723 -131664766 - L2 LINE L2 -4 3309 3160 1824 204 0 3 chr12 12617723 12618071 -131664418 - L1PB4 LINE L1 -3 6153 5807 322 313 135 60 chr12 12618071 12618323 -131664166 - L2 LINE L2 -153 3160 2863 45221 37 1 3 chr12 12618404 12624571 -131657918 + L1PA4 LINE L1 2 6152 -3 2344 75 0 10 chr12 12625769 12626062 -131656427 + AluY SINE Alu 1 290 -21 1750 173 0 23 chr12 12626321 12626621 -131655868 - AluJb SINE Alu -15 297 5 21 0 0 0 chr12 12626626 12626647 -131655842 + AT_rich Low_complexity Low_complexity 1 21 0 2508 68 3 0 chr12 12628081 12628389 -131654100 + AluY SINE Alu 1 309 -2 1268 114 0 0 chr12 12628390 12628556 -131653933 + AluSg/x SINE Alu 128 293 -17 6421 162 26 50 chr12 12628966 12630678 -131651811 - L1MC1 LINE L1 -6 6327 4677 2253 98 0 0 chr12 12632817 12633103 -131649386 + AluSx SINE Alu 15 300 -12 474 291 115 36 chr12 12633362 12634138 -131648351 + L1MC4a LINE L1 4238 5074 -1072 251 271 29 14 chr12 12634305 12634375 -131648114 + MLT1J LTR MaLR 110 180 -331 289 241 44 84 chr12 12634484 12634670 -131647819 + MLT1J LTR MaLR 362 511 0 280 256 23 0 chr12 12634817 12634903 -131647586 + L1MC4a LINE L1 5254 5341 -2467 4214 181 5 50 chr12 12634912 12635401 -131647088 + L1 LINE L1 4125 4584 -1562 241 35 0 0 chr12 12635401 12635430 -131647059 - U6 snRNA snRNA -77 30 2 4214 181 5 50 chr12 12635430 12635841 -131646648 + L1 LINE L1 4584 5012 -1134 604 237 113 66 chr12 12635848 12636122 -131646367 + L1MC4a LINE L1 5345 5631 -2177 365 279 109 18 chr12 12636138 12636303 -131646186 + L1MC4a LINE L1 5722 5901 -1907 662 56 0 0 chr12 12636343 12636432 -131646057 + Alu SINE Alu 221 309 0 303 28 0 0 chr12 12636442 12636478 -131646011 + (TA)n Simple_repeat Simple_repeat 1 36 0 2225 213 48 10 chr12 12636578 12637081 -131645408 - MLT1G LTR MaLR 0 590 69 242 290 7 43 chr12 12637638 12637776 -131644713 + CT-rich Low_complexity Low_complexity 2 134 0 2132 168 24 40 chr12 12637944 12638397 -131644092 - L1MB3 LINE L1 0 6183 5738 356 267 29 9 chr12 12639098 12639203 -131643286 + HAL1 LINE L1 764 870 -1637 * 365 304 64 12 chr12 12639199 12639370 -131643119 + HAL1 LINE L1 2309 2488 -19 1489 179 61 32 chr12 12639398 12639678 -131642811 - AluJo SINE Alu -24 288 1 21 36 0 0 chr12 12639681 12639709 -131642780 + AT_rich Low_complexity Low_complexity 1 28 0 464 307 99 65 chr12 12639743 12640017 -131642472 + L2 LINE L2 2445 2708 -605 773 183 8 0 chr12 12640017 12640148 -131642341 + FLAM_C SINE Alu 1 132 -1 464 307 99 65 chr12 12640148 12640673 -131641816 + L2 LINE L2 2708 3270 -43 2372 113 0 0 chr12 12641335 12641644 -131640845 - AluSq SINE Alu -4 309 1 195 313 0 15 chr12 12641820 12641887 -131640602 + MIR3 SINE MIR 143 208 0 364 337 84 70 chr12 12642080 12642424 -131640065 - L2 LINE L2 0 3272 2924 262 282 89 32 chr12 12642583 12642707 -131639782 - L2 LINE L2 -593 2721 2591 2478 236 12 49 chr12 12642713 12642904 -131639585 + L1MC4a LINE L1 5375 5571 -2237 2370 103 3 0 chr12 12642904 12643206 -131639283 + AluSq SINE Alu 1 303 -10 2478 236 12 49 chr12 12643206 12643733 -131638756 + L1MC4a LINE L1 5571 6067 -1741 3822 240 35 29 chr12 12643804 12645015 -131637474 + L1MC3 LINE L1 4078 5296 -850 231 167 15 15 chr12 12645035 12645101 -131637388 + L1MA4A LINE L1 6003 6068 -235 7844 19 6 0 chr12 12645101 12646744 -131635745 - L1PA2 LINE L1 -1 6154 4507 10987 31 0 1 chr12 12646744 12648042 -131634447 + L1PA2 LINE L1 3207 4503 -1643 1235 149 45 33 chr12 12648042 12648281 -131634208 + L1MA4A LINE L1 6059 6303 0 410 209 104 41 chr12 12648282 12648502 -131633987 + Charlie7 DNA MER1_type 2313 2546 -66 4008 191 56 89 chr12 12648503 12650160 -131632329 + L1MC3 LINE L1 5316 6962 -1080 344 303 42 0 chr12 12650182 12650324 -131632165 + L1MC4 LINE L1 7194 7341 -701 440 304 15 7 chr12 12650392 12650527 -131631962 + MLT2F LTR ERVL 1 136 -527 1666 194 57 27 chr12 12650903 12651274 -131631215 + MSTD LTR MaLR 15 396 0 1954 171 0 0 chr12 12651518 12651827 -131630662 + AluJb SINE Alu 1 309 -3 189 282 42 28 chr12 12651956 12652027 -131630462 - L2 LINE L2 -17 3296 3225 249 336 109 14 chr12 12652275 12652495 -131629994 - MIR SINE MIR -2 260 20 2496 53 0 23 chr12 12652642 12652945 -131629544 + AluY SINE Alu 1 296 -15 239 293 124 25 chr12 12653894 12654136 -131628353 - L2 LINE L2 -1339 1975 1710 1840 154 0 4 chr12 12654136 12654416 -131628073 - AluJb SINE Alu -11 301 23 276 30 0 0 chr12 12655897 12655930 -131626559 + (TG)n Simple_repeat Simple_repeat 2 34 0 2185 129 12 26 chr12 12656040 12656382 -131626107 + MER1B DNA MER1_type 1 337 0 359 322 68 0 chr12 12656490 12656608 -131625881 - MER91A DNA MER1_type -27 169 44 1220 164 100 74 chr12 12657151 12657224 -131625265 - MLT1A2 LTR MaLR 0 374 304 2639 112 26 26 chr12 12657224 12657652 -131624837 - MSTA LTR MaLR 0 428 1 1220 164 100 74 chr12 12657652 12657889 -131624600 - MLT1A2 LTR MaLR -70 304 56 420 216 244 34 chr12 12658190 12658619 -131623870 - L2 LINE L2 -75 3238 2715 275 275 65 22 chr12 12660139 12660277 -131622212 + MIR SINE MIR 54 197 -65 29 60 0 0 chr12 12661051 12661101 -131621388 + AT_rich Low_complexity Low_complexity 1 50 0 254 233 113 94 chr12 12661111 12661195 -131621294 - MIR SINE MIR -48 214 124 1539 183 79 3 chr12 12661195 12661485 -131621004 + AluJo SINE Alu 1 312 0 254 233 113 94 chr12 12661485 12661559 -131620930 - MIR SINE MIR -138 124 53 2300 112 3 0 chr12 12661610 12661913 -131620576 + AluSx SINE Alu 1 304 -8 190 282 87 10 chr12 12662264 12662367 -131620122 + MIR SINE MIR 30 140 -68 192 283 0 0 chr12 12663750 12663803 -131618686 - L3 LINE CR1 -201 1376 1324 197 33 33 0 chr12 12664743 12664773 -131617716 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 340 219 67 62 chr12 12665056 12665234 -131617255 + L2 LINE L2 1677 1855 -1459 21 0 0 0 chr12 12666394 12666415 -131616074 + AT_rich Low_complexity Low_complexity 1 21 0 273 261 17 61 chr12 12666510 12666625 -131615864 + MIR SINE MIR 41 150 -112 1024 61 15 0 chr12 12666626 12666757 -131615732 + AluY SINE Alu 176 308 -3 2302 94 3 26 chr12 12666782 12667091 -131615398 + AluSc SINE Alu 1 302 -7 235 253 22 62 chr12 12667556 12667734 -131614755 + GA-rich Low_complexity Low_complexity 4 174 0 340 168 11 68 chr12 12667734 12667924 -131614565 + G-rich Low_complexity Low_complexity 2 180 0 318 360 0 0 chr12 12667938 12668038 -131614451 + G-rich Low_complexity Low_complexity 3 102 0 594 126 0 0 chr12 12668048 12668151 -131614338 + (G)n Simple_repeat Simple_repeat 1 103 0 578 211 6 14 chr12 12668153 12668293 -131614196 + L1ME1 LINE L1 5733 5872 -279 * 904 259 23 0 chr12 12668290 12668553 -131613936 + L1MB7 LINE L1 5916 6184 0 2036 141 3 0 chr12 12669277 12669574 -131612915 + AluSg SINE Alu 1 298 -12 736 228 5 34 chr12 12670326 12670532 -131611957 + MIR SINE MIR 32 231 -31 211 246 16 0 chr12 12670722 12670783 -131611706 - MIR SINE MIR -56 152 91 2328 107 0 0 chr12 12671275 12671575 -131610914 - AluSq SINE Alu -13 300 1 261 291 13 13 chr12 12673120 12673199 -131609290 + MIR SINE MIR 20 98 -164 2109 127 6 13 chr12 12673478 12673792 -131608697 + AluJo SINE Alu 1 312 0 320 319 42 14 chr12 12673931 12674075 -131608414 - MIR SINE MIR -80 182 35 327 224 224 0 chr12 12674991 12675107 -131607382 - MIR3 SINE MIR -5 203 62 256 273 31 0 chr12 12675877 12675995 -131606494 + L1MEc LINE L1 1939 2020 -4195 1299 187 23 21 chr12 12676012 12676403 -131606086 + L1MEc LINE L1 2058 2457 -3758 322 313 135 60 chr12 12676714 12676865 -131605624 - L2 LINE L2 -4 3309 3171 1211 230 0 15 chr12 12676865 12677126 -131605363 - L1PA16 LINE L1 -4 6162 5906 1824 204 0 3 chr12 12676877 12677225 -131605264 - L1PB4 LINE L1 -3 6153 5807 322 313 135 60 chr12 12677126 12677477 -131605012 - L2 LINE L2 -142 3171 2863 45102 37 1 3 chr12 12677558 12683723 -131598766 + L1PA4 LINE L1 2 6152 -3 2344 75 0 10 chr12 12684921 12685214 -131597275 + AluY SINE Alu 1 290 -21 1750 173 0 23 chr12 12685473 12685773 -131596716 - AluJb SINE Alu -15 297 5 21 0 0 0 chr12 12685778 12685799 -131596690 + AT_rich Low_complexity Low_complexity 1 21 0 2441 70 3 0 chr12 12687233 12687533 -131594956 + AluY SINE Alu 1 301 -10 316 339 15 0 chr12 12688950 12689080 -131593409 - L2 LINE L2 -3 3310 3179 188 200 80 20 chr12 12689143 12689193 -131593296 - MIR SINE MIR -7 255 203 2306 68 31 7 chr12 12689475 12689767 -131592722 - AluY SINE Alu -12 299 1 351 265 22 81 chr12 12689943 12690128 -131592361 + L1MC5 LINE L1 7744 7917 -44 216 163 20 0 chr12 12690466 12690515 -131591974 - MIR SINE MIR -77 131 82 2214 113 13 7 chr12 12690772 12691073 -131591416 - AluSx SINE Alu -9 303 1 254 231 0 0 chr12 12691467 12691519 -131590970 + MIR3 SINE MIR 144 195 -13 194 318 80 40 chr12 12692146 12692297 -131590192 - L2 LINE L2 -213 3059 2903 2185 125 0 3 chr12 12692371 12692668 -131589821 + AluSx SINE Alu 1 296 -16 231 174 0 0 chr12 12692669 12692715 -131589774 + LTR66 LTR ERVL 394 439 -171 331 300 12 12 chr12 12692715 12692885 -131589604 + (TATATG)n Simple_repeat Simple_repeat 6 175 0 301 322 0 0 chr12 12692927 12693017 -131589472 + L1MC4 LINE L1 6614 6703 -1339 3842 181 32 61 chr12 12693733 12695149 -131587340 + L1MC1 LINE L1 4677 6031 -302 2179 153 26 3 chr12 12695269 12695654 -131586835 + L1MC1 LINE L1 5934 6327 -6 1264 126 0 0 chr12 12696064 12696239 -131586250 - AluSg/x SINE Alu -17 293 119 1201 214 28 3 chr12 12696239 12696528 -131585961 - AluY SINE Alu -10 301 6 248 203 62 16 chr12 12696737 12696801 -131585688 + L2 LINE L2 3247 3313 0 1046 212 9 28 chr12 12697107 12697324 -131585165 - MER58A DNA MER1_type 0 224 12 3058 164 20 63 chr12 12698176 12698815 -131583674 + LTR9 LTR ERV1 1 612 0 1777 175 0 13 chr12 12700530 12700833 -131581656 - AluJo SINE Alu -5 307 9 2670 27 3 3 chr12 12701768 12702069 -131580420 - AluY SINE Alu -10 301 1 1157 103 0 0 chr12 12702069 12702215 -131580274 - AluSq/x SINE Alu -167 146 1 358 265 10 10 chr12 12703577 12703675 -131578814 + MER5B DNA MER1_type 81 178 0 860 164 26 20 chr12 12704707 12704859 -131577630 - FRAM SINE Alu -13 153 1 1945 226 73 18 chr12 12705194 12705686 -131576803 + LTR40a LTR ERVL 1 519 0 1595 161 65 24 chr12 12705689 12705981 -131576508 - AluJo SINE Alu -8 304 1 21 36 0 0 chr12 12705984 12706012 -131576477 + AT_rich Low_complexity Low_complexity 1 28 0 464 308 92 66 chr12 12706046 12706320 -131576169 + L2 LINE L2 2445 2710 -603 753 191 8 0 chr12 12706320 12706451 -131576038 + FLAM_C SINE Alu 1 132 -1 464 308 92 66 chr12 12706451 12706976 -131575513 + L2 LINE L2 2710 3270 -43 2372 113 0 0 chr12 12707635 12707944 -131574545 - AluSq SINE Alu -4 309 1 195 313 0 15 chr12 12708120 12708187 -131574302 + MIR3 SINE MIR 143 208 0 349 340 84 70 chr12 12708380 12708724 -131573765 - L2 LINE L2 0 3272 2924 185 183 402 0 chr12 12709419 12709501 -131572988 - L2 LINE L2 -2 3270 3156 2424 66 7 7 chr12 12710023 12710327 -131572162 - AluY SINE Alu -5 306 3 2249 118 0 3 chr12 12711158 12711463 -131571026 + AluSx SINE Alu 2 305 -7 1324 171 69 104 chr12 12711475 12711516 -131570973 + MLT1B LTR MaLR 1 42 -348 2338 82 7 0 chr12 12711516 12711808 -131570681 + AluSp SINE Alu 1 294 -19 1324 171 69 104 chr12 12711808 12712170 -131570319 + MLT1B LTR MaLR 42 390 0 3402 161 91 18 chr12 12713261 12713357 -131569132 - MER21B LTR ERV1 -85 778 690 3545 111 45 0 chr12 12713357 12713449 -131569040 - MER41A LTR ERV1 0 554 468 2528 31 3 3 chr12 12713449 12713740 -131568749 + AluY SINE Alu 1 291 -20 3545 111 45 0 chr12 12713740 12714177 -131568312 - MER41A LTR ERV1 -86 468 1 3402 161 91 18 chr12 12714177 12714750 -131567739 - MER21B LTR ERV1 -173 690 60 2470 74 0 0 chr12 12714751 12715048 -131567441 + AluY SINE Alu 1 297 -14 2508 77 0 0 chr12 12715931 12716242 -131566247 - AluY SINE Alu 0 311 1 460 252 27 41 chr12 12716483 12716630 -131565859 - MLT1J LTR MaLR -6 505 361 1926 152 7 10 chr12 12716641 12716944 -131565545 + AluSx SINE Alu 1 302 -10 654 262 120 75 chr12 12717487 12717930 -131564559 + HAL1 LINE L1 1 463 -2044 1750 173 0 23 chr12 12719079 12719379 -131563110 + AluJb SINE Alu 5 297 -15 2144 86 7 20 chr12 12719642 12719934 -131562555 - AluY SINE Alu -23 288 1 298 183 183 25 chr12 12720095 12720215 -131562274 - MER69 DNA AcHobo -10 2516 2378 1531 165 26 0 chr12 12720356 12720628 -131561861 + L1MC3 LINE L1 7500 7778 -7 642 253 96 76 chr12 12720642 12721000 -131561489 - L1M3 LINE L1 -515 5665 5289 368 201 49 69 chr12 12721114 12721258 -131561231 - L1ME4a LINE L1 -18 6103 5963 376 190 190 7 chr12 12721296 12721366 -131561123 + L1MA8 LINE L1 6121 6177 -114 1904 154 3 13 chr12 12721366 12721671 -131560818 - AluJo SINE Alu -10 302 1 376 190 190 7 chr12 12721671 12721742 -131560747 + L1MA8 LINE L1 6177 6288 -3 936 244 34 15 chr12 12721906 12722172 -131560317 + HsTC2c DNA Tc2 2 272 -457 518 251 240 0 chr12 12722181 12722360 -131560129 + HsTC2c DNA Tc2 508 729 0 1737 155 8 0 chr12 12722681 12722939 -131559550 - AluSq SINE Alu -53 260 1 4119 157 48 28 chr12 12722965 12723856 -131558633 - L1MDa LINE L1 -4152 2388 1480 748 251 69 0 chr12 12723852 12724027 -131558462 - L1MDa LINE L1 -5765 775 589 * 2053 110 13 23 chr12 12724441 12724751 -131557738 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr12 12725021 12725049 -131557440 + AT_rich Low_complexity Low_complexity 1 28 0 938 278 80 91 chr12 12725439 12725894 -131556595 - L1MEc LINE L1 -4920 2202 1744 1941 123 3 27 chr12 12725894 12726186 -131556303 - AluSx SINE Alu -25 287 3 938 278 80 91 chr12 12726186 12726762 -131555727 - L1MEc LINE L1 -5378 1744 1189 2013 145 0 16 chr12 12726762 12727065 -131555424 - AluJo SINE Alu -14 298 1 938 278 80 91 chr12 12727065 12727488 -131555001 - L1MEc LINE L1 -5933 1189 763 280 261 114 35 chr12 12727490 12727636 -131554853 - MIR3 SINE MIR -35 173 17 1336 101 0 0 chr12 12727869 12728048 -131554441 - AluSx SINE Alu -121 191 13 658 139 37 0 chr12 12728061 12728169 -131554320 + MER41B LTR ERV1 524 635 0 264 264 35 11 chr12 12728185 12728272 -131554217 + MIR SINE MIR 70 158 -104 288 0 0 0 chr12 12728541 12728573 -131553916 + (CA)n Simple_repeat Simple_repeat 2 33 0 1342 149 0 2 chr12 12728763 12729006 -131553483 - AluJb SINE Alu -26 286 1 241 245 19 0 chr12 12729006 12729059 -131553430 + MER21B LTR ERV1 18 71 -792 1924 141 3 6 chr12 12729059 12729372 -131553117 - AluSx SINE Alu 0 312 1 735 256 46 15 chr12 12729393 12729655 -131552834 - L1MEc LINE L1 -6129 294 25 2899 121 5 2 chr12 12729926 12730349 -131552140 - MER41B LTR ERV1 -211 424 1 1268 131 0 70 chr12 12730731 12730904 -131551585 - AluJb SINE Alu -18 294 139 1940 108 0 59 chr12 12730904 12731210 -131551279 - AluSx SINE Alu -24 288 1 1268 131 0 70 chr12 12731210 12731265 -131551224 - AluJb SINE Alu -173 139 82 1441 150 116 45 chr12 12731569 12731950 -131550539 + MER69 DNA AcHobo 1484 1891 -635 4697 185 26 13 chr12 12732149 12733338 -131549151 - L1MB8 LINE L1 -17 6161 4960 1238 172 86 81 chr12 12733338 12733710 -131548779 + MLT1A2 LTR MaLR 1 374 0 4697 185 26 13 chr12 12733710 12733806 -131548683 - L1MB8 LINE L1 -1218 4960 4867 17214 28 0 0 chr12 12734819 12736837 -131545652 - L1P LINE L1 -924 5222 3205 6360 24 1 0 chr12 12736835 12737579 -131544910 + L1P LINE L1 4507 5251 -895 * 791 116 8 0 chr12 12737679 12737800 -131544689 + AluSp/q SINE Alu 191 312 -1 1602 153 80 0 chr12 12737813 12738100 -131544389 + AluSg SINE Alu 1 310 0 370 287 73 24 chr12 12738100 12738264 -131544225 + L1MC5 LINE L1 7492 7663 -298 694 194 0 22 chr12 12738268 12738402 -131544087 + AluJo SINE Alu 6 136 -176 1527 130 119 4 chr12 12738467 12738744 -131543745 + AluSx SINE Alu 1 309 -3 359 193 44 61 chr12 12738745 12738859 -131543630 - L1MEc LINE L1 -6242 154 43 189 260 10 125 chr12 12738877 12738981 -131543508 + MER5A DNA MER1_type 45 136 -53 * 326 325 39 132 chr12 12738975 12739406 -131543083 - L2 LINE L2 -35 3237 2847 2073 103 0 17 chr12 12739439 12739741 -131542748 + AluY SINE Alu 1 297 -14 34 24 0 0 chr12 12741544 12741585 -131540904 + AT_rich Low_complexity Low_complexity 1 41 0 1668 136 15 11 chr12 12741591 12741864 -131540625 - AluSx SINE Alu -38 274 1 267 133 0 0 chr12 12742987 12743032 -131539457 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 1617 178 0 25 chr12 12743035 12743355 -131539134 - AluJb SINE Alu 0 312 1 972 111 0 0 chr12 12743355 12743490 -131538999 - AluJb SINE Alu -177 135 1 360 209 8 23 chr12 12743496 12743625 -131538864 + CT-rich Low_complexity Low_complexity 4 130 0 241 203 174 0 chr12 12744398 12744419 -131538070 - MLT1J LTR MaLR -8 503 487 228 86 0 0 chr12 12744419 12744454 -131538035 + (CAA)n Simple_repeat Simple_repeat 3 37 0 241 203 174 0 chr12 12744454 12744501 -131537988 - MLT1J LTR MaLR -24 487 423 784 292 10 5 chr12 12744642 12744851 -131537638 - MLT1J LTR MaLR -300 211 2 538 245 93 100 chr12 12745084 12745374 -131537115 + L3 LINE CR1 1129 1416 -161 266 340 38 19 chr12 12745383 12745489 -131537000 - L2 LINE L2 -32 3240 3133 218 368 53 0 chr12 12745563 12745658 -131536831 + L3 LINE CR1 1458 1557 -20 227 248 47 147 chr12 12747477 12747556 -131534933 - MER5B DNA MER1_type 0 178 115 2075 136 0 3 chr12 12747556 12747864 -131534625 - AluSx SINE Alu -5 307 1 227 248 47 147 chr12 12747864 12747913 -131534576 - MER5B DNA MER1_type -63 115 63 242 231 13 64 chr12 12747949 12748027 -131534462 + MIR SINE MIR 29 102 -160 426 39 0 0 chr12 12748983 12749035 -131533454 + (TG)n Simple_repeat Simple_repeat 2 53 0 598 247 34 17 chr12 12750725 12750928 -131531561 - MER63 DNA MER1_type -2 1686 2 208 349 40 60 chr12 12751575 12751724 -131530765 - L2 LINE L2 0 3272 3127 2511 160 71 23 chr12 12752351 12752871 -131529618 - L1MB7 LINE L1 -13 6171 5627 2272 84 0 10 chr12 12752880 12753189 -131529300 - AluY SINE Alu -5 306 1 2184 104 0 0 chr12 12753676 12753974 -131528515 - AluSx SINE Alu -14 298 1 448 269 45 70 chr12 12754107 12754227 -131528262 - MIR SINE MIR -109 153 36 530 245 170 0 chr12 12754227 12754386 -131528103 + MER5A DNA MER1_type 4 189 0 448 269 45 70 chr12 12754386 12754421 -131528068 - MIR SINE MIR -226 36 2 770 268 75 8 chr12 12754773 12755012 -131527477 - MIR SINE MIR -6 256 2 2194 116 0 3 chr12 12755754 12756056 -131526433 - HERVH LTR ERV1 -2925 4788 4488 3479 100 6 6 chr12 12756058 12756560 -131525929 - HERVH LTR ERV1 -3720 3993 3492 886 149 20 0 chr12 12756550 12756698 -131525791 - HERVH LTR ERV1 -4423 3290 3140 * 303 263 0 66 chr12 12756677 12756814 -131525675 - HERVH LTR ERV1 -4718 2995 2868 * 795 248 58 15 chr12 12757474 12757680 -131524809 - MIR SINE MIR -46 216 2 1942 173 99 15 chr12 12757708 12758101 -131524388 + MSTB LTR MaLR 1 426 0 226 191 309 0 chr12 12758228 12758296 -131524193 + MIR SINE MIR 161 249 -13 279 256 23 0 chr12 12759465 12759551 -131522938 + L1M LINE L1 5254 5341 -2467 4175 181 5 50 chr12 12759560 12760049 -131522440 + L1MA5A LINE L1 4125 4584 -1562 242 35 0 0 chr12 12760049 12760078 -131522411 - U6 snRNA snRNA -77 30 2 4175 181 5 50 chr12 12760078 12760489 -131522000 + L1MA5A LINE L1 4584 5012 -1134 321 225 7 35 chr12 12760645 12760787 -131521702 + CT-rich Low_complexity Low_complexity 4 141 0 354 262 8 40 chr12 12760832 12760958 -131521531 + CT-rich Low_complexity Low_complexity 4 125 0 207 286 16 0 chr12 12761559 12761622 -131520867 + MIR3 SINE MIR 97 160 -48 1004 242 109 8 chr12 12761622 12761878 -131520611 + MER58 DNA MER1_type 1 282 -2138 1799 151 10 17 chr12 12763003 12763301 -131519188 - AluJo SINE Alu -16 296 1 420 292 124 22 chr12 12763383 12763561 -131518928 + MIR SINE MIR 56 251 -11 853 102 16 16 chr12 12763709 12763837 -131518652 - AluSq/x SINE Alu -183 129 2 3144 128 11 78 chr12 12763927 12764552 -131517937 - L1MA9 LINE L1 -5 6307 5725 438 262 101 13 chr12 12765373 12765522 -131516967 + MIR SINE MIR 31 192 -70 304 148 2 0 chr12 12765766 12765813 -131516676 + Alu SINE Alu 1 42 -260 374 222 120 8 chr12 12766455 12766515 -131515974 + MLT1H LTR MaLR 407 459 -90 1993 134 10 0 chr12 12766515 12766822 -131515667 - AluSp SINE Alu -2 311 2 374 222 120 8 chr12 12766822 12766878 -131515611 + MLT1H LTR MaLR 459 536 -13 216 197 14 70 chr12 12767780 12767851 -131514638 + CT-rich Low_complexity Low_complexity 1 67 0 21 0 0 0 chr12 12767857 12767878 -131514611 + AT_rich Low_complexity Low_complexity 1 21 0 6596 120 38 1 chr12 12767991 12769131 -131513358 + L1MA5A LINE L1 5114 6294 -3 303 125 0 0 chr12 12769135 12769183 -131513306 + L1MC3 LINE L1 7461 7508 -277 432 187 0 0 chr12 12769195 12769270 -131513219 + AluJ/FLAM SINE Alu 2 76 -236 572 126 102 0 chr12 12769416 12769543 -131512946 - AluY SINE Alu -170 141 2 923 174 58 29 chr12 12769628 12769835 -131512654 - AluJo SINE Alu -14 298 86 229 272 103 15 chr12 12769850 12769986 -131512503 - L1ME LINE L1 -283 5838 5691 378 47 250 0 chr12 12770077 12770141 -131512348 + MADE1 DNA Mariner 1 80 0 1605 185 23 3 chr12 12770254 12770557 -131511932 - AluJo SINE Alu -3 309 1 7630 22 10 0 chr12 12771053 12771978 -131510511 + L1PA4 LINE L1 5221 6155 0 5502 111 35 1 chr12 12772678 12773498 -131508991 - HERVH LTR ERV1 -5604 2109 1262 32 43 0 0 chr12 12773512 12773558 -131508931 + GC_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 12773572 12773594 -131508895 + GC_rich Low_complexity Low_complexity 1 22 0 1832 148 0 3 chr12 12773848 12774146 -131508343 + AluSx SINE Alu 1 297 -15 235 163 0 23 chr12 12774169 12774212 -131508277 - MER34B LTR ERV1 -466 99 58 1807 108 7 49 chr12 12774521 12774827 -131507662 - AluJb SINE Alu -19 293 1 235 325 26 0 chr12 12774878 12774955 -131507534 + MIR SINE MIR 1 79 -183 1713 195 142 14 chr12 12775079 12775509 -131506980 - MER31A LTR ERV1 0 485 1 1265 193 0 0 chr12 12776240 12776458 -131506031 + HERVH LTR ERV1 4932 5149 -2564 1413 126 23 0 chr12 12776459 12776674 -131505815 + HERVH LTR ERV1 5600 5819 -1894 * 2440 90 50 13 chr12 12776672 12777050 -131505439 + HERVH LTR ERV1 7322 7713 0 2120 115 154 5 chr12 12777050 12777440 -131505049 + LTR7 LTR ERV1 1 448 -2 358 206 18 13 chr12 12777442 12777539 -131504950 - AluS SINE Alu -229 74 3 2315 38 41 7 chr12 12778464 12778757 -131503732 + AluY SINE Alu 1 303 -8 366 324 103 79 chr12 12779059 12779466 -131503023 - L2 LINE L2 0 3313 2897 314 402 0 27 chr12 12780149 12780333 -131502156 + C-rich Low_complexity Low_complexity 2 180 0 272 308 15 0 chr12 12780341 12780406 -131502083 + polypyrimidine Low_complexity Low_complexity 6 71 0 381 167 45 0 chr12 12780548 12780614 -131501875 + AluS SINE Alu 1 69 -239 1211 229 14 32 chr12 12780680 12781051 -131501438 - L1M4 LINE L1 -3417 2729 2366 2039 101 0 49 chr12 12782395 12782703 -131499786 + AluSg SINE Alu 1 293 -17 208 273 0 18 chr12 12782815 12782870 -131499619 - L3 LINE CR1 -655 922 869 709 157 7 82 chr12 12783318 12783465 -131499024 + FLAM_C SINE Alu 2 137 -6 1891 112 17 10 chr12 12783478 12783772 -131498717 + AluSx SINE Alu 3 298 -14 297 186 0 0 chr12 12784050 12784120 -131498369 + G-rich Low_complexity Low_complexity 1 70 0 321 281 0 0 chr12 12784212 12784320 -131498169 + G-rich Low_complexity Low_complexity 1 108 0 23 68 0 0 chr12 12784420 12784464 -131498025 + GC_rich Low_complexity Low_complexity 1 44 0 2142 81 7 3 chr12 12784952 12785247 -131497242 - AluSx SINE Alu -16 296 1 392 353 12 42 chr12 12785424 12785591 -131496898 + L3 LINE CR1 1309 1470 -107 2829 176 36 6 chr12 12785935 12785971 -131496518 - MLT2B2 LTR ERVL 0 515 482 255 31 0 0 chr12 12785971 12786003 -131496486 + (CA)n Simple_repeat Simple_repeat 1 32 0 2829 176 36 6 chr12 12786003 12786466 -131496023 - MLT2B2 LTR ERVL -33 482 1 435 317 109 25 chr12 12786545 12786867 -131495622 + MLT1K LTR MaLR 238 586 -2 1276 62 17 0 chr12 12787174 12787352 -131495137 + L1P LINE L1 4323 4503 -1643 1211 153 45 33 chr12 12787352 12787591 -131494898 + L1MA4A LINE L1 6059 6303 0 269 234 99 45 chr12 12787592 12787814 -131494675 + Charlie7 DNA MER1_type 2313 2546 -66 534 234 43 28 chr12 12787818 12788061 -131494428 + L1MC/D LINE L1 5319 5573 -760 1703 143 80 0 chr12 12788338 12788679 -131493810 - AluSx SINE Alu 0 364 1 1753 189 46 19 chr12 12789279 12789696 -131492793 + MSTA LTR MaLR 1 428 0 425 243 139 28 chr12 12789696 12789840 -131492649 + MIR SINE MIR 77 236 -26 215 109 87 43 chr12 12790090 12790136 -131492353 - L2 LINE L2 0 3313 3266 1856 153 3 0 chr12 12790727 12791035 -131491454 + AluJb SINE Alu 1 309 -3 3204 141 46 22 chr12 12791135 12791408 -131491081 - MER7C DNA MER2_type -2426 602 337 2456 71 0 0 chr12 12791408 12791718 -131490771 + AluY SINE Alu 1 310 -1 3204 141 46 22 chr12 12791718 12792032 -131490457 - MER7C DNA MER2_type -2691 337 1 181 385 0 0 chr12 12792105 12792170 -131490319 - L2 LINE L2 -213 3059 2995 870 220 0 12 chr12 12792321 12792494 -131489995 + MER5B DNA MER1_type 7 177 -1 646 214 16 0 chr12 12792668 12792794 -131489695 + MER5A DNA MER1_type 2 129 -60 419 226 9 47 chr12 12794292 12794398 -131488091 + MIR SINE MIR 24 125 -83 4785 125 44 36 chr12 12794910 12795768 -131486721 - L1MA8 LINE L1 -25 6266 5402 189 287 223 0 chr12 12795773 12795867 -131486622 - MIR SINE MIR -54 208 94 1331 154 33 173 chr12 12796289 12796555 -131485934 + MLT1A2 LTR MaLR 11 198 -176 2255 96 0 0 chr12 12796555 12796856 -131485633 + AluSc SINE Alu 1 301 -8 1331 154 33 173 chr12 12796856 12797012 -131485477 + MLT1A2 LTR MaLR 198 374 0 347 232 20 0 chr12 12797046 12797145 -131485344 - HAL1 LINE L1 -1191 1316 1216 198 0 0 0 chr12 12797240 12797262 -131485227 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 440 233 99 80 chr12 12797344 12797570 -131484919 - MLT1L LTR MaLR -203 308 101 2100 122 0 6 chr12 12797647 12797958 -131484531 - AluSx SINE Alu -3 309 1 1101 293 123 61 chr12 12797967 12799082 -131483407 - HAL1 LINE L1 -1323 1184 1 2101 122 13 0 chr12 12799625 12799928 -131482561 - AluSx SINE Alu -5 307 1 305 333 50 28 chr12 12799939 12800080 -131482409 + L1MC/D LINE L1 5614 5757 -2051 758 251 69 0 chr12 12800344 12800519 -131481970 + L1MD1 LINE L1 589 775 -5765 * 4878 171 56 38 chr12 12800515 12801433 -131481056 + L1MD1 LINE L1 1480 2380 -4160 1954 136 7 0 chr12 12801433 12801727 -131480762 + AluSx SINE Alu 1 296 -16 4878 171 56 38 chr12 12801727 12801941 -131480548 + L1MD1 LINE L1 2380 2589 -3951 1473 174 7 24 chr12 12801941 12802228 -131480261 + AluJo SINE Alu 6 287 -25 4878 171 56 38 chr12 12802228 12802304 -131480185 + L1MD1 LINE L1 2589 2662 -3878 1970 133 0 3 chr12 12802304 12802604 -131479885 + AluSx SINE Alu 4 302 -10 4878 171 56 38 chr12 12802604 12803009 -131479480 + L1MD1 LINE L1 2662 3123 -3417 342 182 45 0 chr12 12803075 12803141 -131479348 - AluS SINE Alu -239 69 1 6325 204 32 33 chr12 12803141 12803324 -131479165 + L1MD1 LINE L1 3830 4012 -2624 1332 176 28 113 chr12 12803324 12803721 -131478768 - MLT1A1 LTR MaLR -2 363 1 6325 204 32 33 chr12 12803721 12805994 -131476495 + L1MD1 LINE L1 4012 6284 -352 2594 35 0 3 chr12 12805994 12806306 -131476183 + AluY SINE Alu 1 311 0 6325 204 32 33 chr12 12806306 12806659 -131475830 + L1MD1 LINE L1 6284 6636 0 404 214 22 129 chr12 12806716 12806894 -131475595 - MLT1H LTR MaLR -165 384 226 1659 123 0 4 chr12 12806908 12807151 -131475338 + AluSx SINE Alu 5 246 -66 2212 111 3 0 chr12 12807151 12807456 -131475033 + AluSq SINE Alu 1 307 -6 477 76 0 0 chr12 12807500 12807566 -131474923 + (CAGGA)n Simple_repeat Simple_repeat 4 69 0 209 111 83 0 chr12 12807566 12807602 -131474887 + polypurine Low_complexity Low_complexity 2 40 0 297 295 19 45 chr12 12807645 12807801 -131474688 - MLT1H LTR MaLR -375 174 23 543 206 0 0 chr12 12807968 12808143 -131474346 + (TG)n Simple_repeat Simple_repeat 2 176 0 663 169 0 0 chr12 12808163 12808335 -131474154 + (TG)n Simple_repeat Simple_repeat 2 173 0 780 175 0 0 chr12 12808352 12808625 -131473864 + (TG)n Simple_repeat Simple_repeat 1 273 0 2389 126 36 83 chr12 12808794 12809262 -131473227 - Tigger2 DNA MER2_type 0 2718 2273 462 152 0 0 chr12 12809253 12809319 -131473170 - Tigger2 DNA MER2_type -2651 67 2 * 412 311 37 0 chr12 12809503 12809638 -131472851 + MIR SINE MIR 110 249 -13 2242 76 3 3 chr12 12809721 12810023 -131472466 + AluSg SINE Alu 3 304 -6 1380 66 0 0 chr12 12810558 12810739 -131471750 + AluY SINE Alu 131 311 0 1349 64 25 136 chr12 12810973 12811208 -131471281 + MER30 DNA MER1_type 1 209 -21 495 267 181 33 chr12 12811687 12811957 -131470532 - L3 LINE CR1 -70 1507 1198 4215 134 18 1 chr12 12812373 12813035 -131469454 - L1MA7 LINE L1 0 6291 5619 897 243 7 45 chr12 12813364 12813610 -131468879 - MIR SINE MIR -7 255 15 2306 82 20 0 chr12 12813688 12813991 -131468498 - AluSp SINE Alu -4 309 1 769 329 60 7 chr12 12814012 12814295 -131468194 - L3 LINE CR1 -575 1002 705 517 274 42 99 chr12 12814307 12814497 -131467992 - MIR SINE MIR 0 262 90 2197 102 0 3 chr12 12814497 12814800 -131467689 + AluSx SINE Alu 1 302 -10 517 274 42 99 chr12 12814800 12814872 -131467617 - MIR SINE MIR -172 90 15 182 279 54 108 chr12 12814890 12814945 -131467544 - L3 LINE CR1 -894 683 627 2256 88 3 0 chr12 12814945 12815251 -131467238 + AluSg SINE Alu 1 307 -3 182 279 54 108 chr12 12815251 12815324 -131467165 - L3 LINE CR1 -950 627 562 203 358 37 0 chr12 12815352 12815433 -131467056 - MIR SINE MIR -120 142 59 296 356 205 8 chr12 12815521 12815760 -131466729 - L3 LINE CR1 -1058 519 234 1853 183 137 14 chr12 12816140 12816572 -131465917 + MER31A LTR ERV1 1 485 0 235 325 26 0 chr12 12816696 12816773 -131465716 - MIR SINE MIR -183 79 1 2200 72 3 23 chr12 12816824 12817128 -131465361 + AluSq SINE Alu 1 298 -15 791 179 98 98 chr12 12817245 12817652 -131464837 - LTR37A LTR ERV1 -1 425 19 2290 74 10 0 chr12 12817752 12818050 -131464439 + AluSp SINE Alu 1 301 -12 307 259 37 56 chr12 12818108 12818216 -131464273 + MIR SINE MIR 12 117 -145 1968 104 13 23 chr12 12818218 12818526 -131463963 - AluSx SINE Alu -5 307 3 1478 88 23 9 chr12 12818530 12818747 -131463742 - AluSx SINE Alu -11 301 82 2215 68 48 6 chr12 12818748 12819059 -131463430 + LTR7 LTR ERV1 125 448 -2 20842 89 15 23 chr12 12819061 12822080 -131460409 + HERVH LTR ERV1 1 2995 -4718 931 135 20 0 chr12 12822059 12822207 -131460282 + HERVH LTR ERV1 3140 3290 -4423 * 3512 103 4 6 chr12 12822197 12822700 -131459789 + HERVH LTR ERV1 3492 3993 -3720 4487 140 0 1 chr12 12822702 12823365 -131459124 + HERVH LTR ERV1 4488 5149 -2564 1424 130 19 0 chr12 12823366 12823582 -131458907 + HERVH LTR ERV1 5600 5819 -1894 * 2409 95 50 13 chr12 12823580 12823958 -131458531 + HERVH LTR ERV1 7322 7713 0 2394 92 148 5 chr12 12823958 12824350 -131458139 + LTR7 LTR ERV1 1 448 -2 522 137 0 0 chr12 12824352 12824425 -131458064 - AluSx SINE Alu -239 74 2 1168 134 69 56 chr12 12824428 12824659 -131457830 - AluJo SINE Alu -20 292 59 337 246 0 0 chr12 12824706 12824775 -131457714 + MIR SINE MIR 101 169 -93 1244 189 139 99 chr12 12825291 12825526 -131456963 - MER34B LTR ERV1 0 565 341 2123 110 0 13 chr12 12825526 12825836 -131456653 + AluSx SINE Alu 1 306 -6 1244 189 139 99 chr12 12825836 12826056 -131456433 - MER34B LTR ERV1 -224 341 86 2254 106 3 0 chr12 12826056 12826367 -131456122 - AluSx SINE Alu 0 312 1 1244 189 139 99 chr12 12826367 12826413 -131456076 - MER34B LTR ERV1 -479 86 43 370 274 116 0 chr12 12826832 12826978 -131455511 + L1ME LINE L1 5583 5745 -376 2355 62 17 0 chr12 12826992 12827284 -131455205 - AluY SINE Alu -12 299 3 793 114 0 0 chr12 12827339 12827453 -131455036 - AluSg/x SINE Alu -10 302 189 1968 134 0 3 chr12 12827544 12827842 -131454647 + AluSx SINE Alu 1 297 -15 235 163 0 23 chr12 12827865 12827908 -131454581 - MER34B LTR ERV1 -466 99 58 1667 131 7 44 chr12 12828217 12828515 -131453974 - AluJb SINE Alu -19 293 7 180 77 0 0 chr12 12828645 12828671 -131453818 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1070 209 178 4 chr12 12828681 12828934 -131453555 - AluJo SINE Alu -4 298 2 22 0 0 0 chr12 12828934 12828956 -131453533 + AT_rich Low_complexity Low_complexity 1 22 0 2345 194 28 20 chr12 12828975 12829482 -131453007 - MER41B LTR ERV1 -9 597 100 502 168 0 65 chr12 12829511 12829618 -131452871 - AluJb SINE Alu -207 105 6 2353 52 0 29 chr12 12829694 12830001 -131452488 + AluY SINE Alu 1 298 -13 525 259 124 11 chr12 12830550 12830679 -131451810 + MIR SINE MIR 51 209 -53 2057 87 31 3 chr12 12830679 12830967 -131451522 + AluSx SINE Alu 1 296 -16 525 259 124 11 chr12 12830967 12831022 -131451467 + MIR SINE MIR 209 256 -6 1851 121 44 3 chr12 12833153 12833450 -131449039 - AluJo SINE Alu -2 310 2 318 167 0 0 chr12 12833833 12833893 -131448596 + (CA)n Simple_repeat Simple_repeat 1 60 0 484 167 0 192 chr12 12834264 12834498 -131447991 + MER53 DNA DNA 1 189 0 287 200 55 0 chr12 12834509 12834564 -131447925 - L2 LINE L2 0 3313 3256 257 35 0 0 chr12 12834567 12834596 -131447893 + tRNA-Lys-AAA tRNA tRNA 1 29 -47 184 148 315 0 chr12 12834597 12834651 -131447838 - L2 LINE L2 -46 3267 3197 2088 125 23 0 chr12 12834710 12835015 -131447474 - AluSx SINE Alu 0 312 1 694 194 0 22 chr12 12835080 12835214 -131447275 - AluJo SINE Alu -176 136 6 358 274 65 48 chr12 12835218 12835387 -131447102 - L1MC5 LINE L1 -298 7663 7489 1602 153 80 0 chr12 12835387 12835674 -131446815 - AluSg SINE Alu 0 310 1 358 274 65 48 chr12 12835674 12835690 -131446799 - L1MC5 LINE L1 -472 7489 7475 2271 87 6 0 chr12 12835690 12836001 -131446488 - AluSp SINE Alu 0 313 1 796 211 35 31 chr12 12836002 12836230 -131446259 - L1MC5 LINE L1 -432 7529 7301 231 332 47 1 chr12 12837139 12837260 -131445229 - MIR SINE MIR -17 191 61 1681 159 24 10 chr12 12837536 12837831 -131444658 + AluJo SINE Alu 1 299 -13 411 339 54 6 chr12 12837888 12838074 -131444415 - MIR SINE MIR -32 230 38 216 263 25 38 chr12 12838362 12838442 -131444047 + L2 LINE L2 2692 2770 -544 222 322 0 22 chr12 12838522 12838612 -131443877 + GA-rich Low_complexity Low_complexity 6 93 0 2088 105 3 0 chr12 12839076 12839370 -131443119 - AluSg SINE Alu -14 296 2 2264 65 7 3 chr12 12840201 12840492 -131441997 + AluY SINE Alu 3 294 -17 2153 119 0 3 chr12 12840615 12840917 -131441572 + AluSg SINE Alu 1 301 -9 186 337 11 11 chr12 12840967 12841059 -131441430 + MIR SINE MIR 97 188 -74 1671 157 0 11 chr12 12841180 12841461 -131441028 + AluJb SINE Alu 3 280 -32 1478 168 3 28 chr12 12841461 12841750 -131440739 + AluJo SINE Alu 17 300 -12 2163 98 0 13 chr12 12841828 12842133 -131440356 - AluSg SINE Alu -9 301 1 186 207 91 91 chr12 12842368 12842489 -131440000 - MIR3 SINE MIR -44 164 44 2365 80 0 0 chr12 12843229 12843540 -131438949 - AluY SINE Alu 0 311 1 735 246 41 100 chr12 12843781 12843939 -131438550 - MLT1J LTR MaLR -6 505 395 1573 178 0 11 chr12 12843939 12844215 -131438274 + AluSx SINE Alu 1 273 -39 735 246 41 100 chr12 12844215 12844378 -131438111 - MLT1J LTR MaLR -116 395 224 800 155 31 0 chr12 12844405 12844534 -131437955 - AluJo SINE Alu -178 134 2 398 247 165 28 chr12 12844540 12844722 -131437767 - MLT1J LTR MaLR -295 216 10 1953 85 0 41 chr12 12845088 12845381 -131437108 + AluSx SINE Alu 23 303 -9 1645 178 0 13 chr12 12846316 12846619 -131435870 + AluJo SINE Alu 9 307 -5 3071 164 20 63 chr12 12848333 12848972 -131433517 - LTR9 LTR ERV1 0 612 1 244 173 19 0 chr12 12849309 12849361 -131433128 - MER4A LTR ERV1 0 664 612 2132 118 0 6 chr12 12849361 12849675 -131432814 + AluSq SINE Alu 1 312 -1 2022 105 0 7 chr12 12849692 12849968 -131432521 + AluSx SINE Alu 3 276 -36 2106 118 0 9 chr12 12850625 12850940 -131431549 + AluSq SINE Alu 2 313 0 373 276 88 119 chr12 12851920 12852399 -131430090 + L3 LINE CR1 1111 1574 -3 813 152 8 0 chr12 12853627 12853752 -131428737 + FLAM_C SINE Alu 1 126 -7 2238 113 0 0 chr12 12853790 12854099 -131428390 + AluSx SINE Alu 4 312 0 1653 157 43 17 chr12 12854110 12854410 -131428079 + AluJb SINE Alu 1 308 -4 439 244 56 56 chr12 12854412 12854572 -131427917 - MIR SINE MIR -90 172 13 241 262 252 29 chr12 12854604 12854707 -131427782 + L2 LINE L2 3146 3271 -1 21 0 0 0 chr12 12855263 12855284 -131427205 + AT_rich Low_complexity Low_complexity 1 21 0 3987 168 63 32 chr12 12856625 12857138 -131425351 + L1MB7 LINE L1 5101 5597 -587 2430 58 0 6 chr12 12857138 12857450 -131425039 + AluY SINE Alu 1 310 -1 3987 168 63 32 chr12 12857450 12857979 -131424510 + L1MB7 LINE L1 5597 6176 -8 208 349 40 60 chr12 12858601 12858750 -131423739 + L2 LINE L2 3127 3272 0 223 283 0 0 chr12 12860002 12860062 -131422427 + MIR SINE MIR 175 234 -28 2224 92 0 16 chr12 12860495 12860811 -131421678 - AluY SINE Alu 0 311 1 326 325 39 132 chr12 12860844 12861275 -131421214 + L2 LINE L2 2847 3237 -35 189 260 10 125 chr12 12861269 12861373 -131421116 - MER5A DNA MER1_type -53 136 45 * 370 239 18 26 chr12 12861391 12861504 -131420985 + L1MEc LINE L1 43 154 -6242 1118 45 0 0 chr12 12861514 12861646 -131420843 - AluY SINE Alu -179 132 1 4876 246 126 31 chr12 12861668 12862941 -131419548 + L1MEc LINE L1 167 1318 -5078 360 0 0 0 chr12 12862941 12862981 -131419508 + (CA)n Simple_repeat Simple_repeat 2 41 0 4876 246 126 31 chr12 12862981 12863383 -131419106 + L1MEc LINE L1 1318 1680 -4716 2013 123 3 0 chr12 12863383 12863675 -131418814 + AluSx SINE Alu 1 293 -19 4876 246 126 31 chr12 12863675 12864035 -131418454 + L1MEc LINE L1 1680 2396 -4000 1410 150 30 34 chr12 12864037 12864304 -131418185 + AluJb SINE Alu 37 302 -10 2563 199 129 39 chr12 12864304 12864405 -131418084 + L1MEc LINE L1 2344 2435 -3780 2130 146 97 5 chr12 12864405 12864795 -131417694 + MSTB LTR MaLR 1 426 0 2563 199 129 39 chr12 12864795 12865610 -131416879 + L1MEc LINE L1 2435 3342 -2873 559 260 81 45 chr12 12865582 12865890 -131416599 + L1MEc LINE L1 1625 1943 -4453 * 1835 133 0 4 chr12 12865893 12866171 -131416318 + AluSx SINE Alu 1 277 -35 234 196 0 0 chr12 12866171 12866217 -131416272 + AluSx SINE Alu 253 298 -4 9996 138 66 57 chr12 12866222 12867377 -131415112 + L1M4c LINE L1 8 1150 -5234 2408 62 0 3 chr12 12867377 12867683 -131414806 + AluY SINE Alu 1 305 -6 9996 138 66 57 chr12 12867683 12867702 -131414787 + L1M4c LINE L1 1150 1167 -5217 4875 179 78 27 chr12 12867702 12868672 -131413817 - LTR28 LTR ERV1 0 1020 1 9996 138 66 57 chr12 12868672 12869182 -131413307 + L1M4c LINE L1 1167 1671 -4713 2690 92 19 8 chr12 12869182 12869553 -131412936 - THE1C LTR MaLR 0 375 1 9996 138 66 57 chr12 12869553 12869739 -131412750 + L1M4c LINE L1 1671 1854 -4530 1828 130 36 11 chr12 12869739 12870016 -131412473 - AluSx SINE Alu -23 289 6 9996 138 66 57 chr12 12870016 12870060 -131412429 + L1M4c LINE L1 1854 1896 -4488 1987 117 13 16 chr12 12870060 12870369 -131412120 - AluY SINE Alu -3 308 1 2332 75 7 0 chr12 12870370 12870665 -131411824 - AluSx SINE Alu -15 297 1 9996 138 66 57 chr12 12870665 12870696 -131411793 + L1M4c LINE L1 1896 1925 -4459 2771 16 0 3 chr12 12870696 12871014 -131411475 - AluYb8 SINE Alu -1 317 1 9996 138 66 57 chr12 12871014 12871144 -131411345 + L1M4c LINE L1 1925 2110 -4274 805 157 0 0 chr12 12871144 12871259 -131411230 + AluJb SINE Alu 2 116 -196 216 100 0 25 chr12 12871315 12871355 -131411134 + (CCG)n Simple_repeat Simple_repeat 3 41 0 198 256 0 0 chr12 12871594 12871672 -131410817 + GA-rich Low_complexity Low_complexity 3 80 0 1195 167 0 9 chr12 12872466 12872702 -131409787 + AluJb SINE Alu 105 338 0 712 206 102 76 chr12 12872707 12872924 -131409565 - MER39 LTR ERV1 -82 625 415 2227 81 7 0 chr12 12872924 12873222 -131409267 - AluSx SINE Alu -12 300 1 712 206 102 76 chr12 12873222 12873442 -131409047 - MER39 LTR ERV1 -292 415 10 345 262 168 0 chr12 12873488 12873637 -131408852 + L1M4 LINE L1 3325 3498 -2648 2108 98 10 3 chr12 12874104 12874399 -131408090 + AluSc SINE Alu 1 297 -12 1735 132 0 14 chr12 12874574 12874854 -131407635 - AluSq SINE Alu -6 307 32 486 236 57 8 chr12 12874954 12875077 -131407412 - FLAM_A SINE Alu -4 129 1 182 250 0 23 chr12 12875122 12875166 -131407323 + MIR SINE MIR 213 255 -7 758 169 0 29 chr12 12876052 12876188 -131406301 - AluJb SINE Alu -26 286 155 30 0 0 0 chr12 12877225 12877255 -131405234 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr12 12879620 12879655 -131402834 + AT_rich Low_complexity Low_complexity 1 35 0 477 0 0 0 chr12 12880267 12880320 -131402169 + (TA)n Simple_repeat Simple_repeat 2 54 0 510 92 53 0 chr12 12882810 12882886 -131399603 + HY1 scRNA scRNA 33 112 0 1538 126 0 9 chr12 12882904 12883134 -131399355 + AluJo SINE Alu 81 308 -4 2309 84 7 7 chr12 12884368 12884666 -131397823 + AluSq SINE Alu 1 298 -15 27 0 0 0 chr12 12884946 12884973 -131397516 + AT_rich Low_complexity Low_complexity 1 27 0 761 316 105 32 chr12 12888289 12888850 -131393639 + L2 LINE L2 1762 2363 -951 196 382 141 5 chr12 12889060 12889259 -131393230 + L2 LINE L2 2403 2628 -686 317 259 71 0 chr12 12889259 12889344 -131393145 - MER112 DNA MER1_type -12 248 158 2391 72 3 0 chr12 12889829 12890120 -131392369 - AluSg SINE Alu -12 298 7 197 232 71 89 chr12 12890271 12890383 -131392106 - MIR SINE MIR -27 235 126 352 159 14 58 chr12 12890383 12890452 -131392037 + AluJ/FLAM SINE Alu 22 87 -215 2396 89 3 0 chr12 12890458 12890762 -131391727 - AluSx SINE Alu -7 305 1 2653 42 0 3 chr12 12891374 12891684 -131390805 - AluY SINE Alu -2 309 1 1777 219 75 38 chr12 12892700 12893207 -131389282 + Charlie1a DNA MER1_type 7 532 -923 2147 119 127 21 chr12 12893512 12893899 -131388590 + MSTA LTR MaLR 1 428 0 469 138 58 0 chr12 12894141 12894228 -131388261 - L1MB3 LINE L1 -13 6170 6079 1090 142 71 14 chr12 12895072 12895284 -131387205 + L1MA7 LINE L1 5773 5996 -295 265 222 28 14 chr12 12895583 12895655 -131386834 + GA-rich Low_complexity Low_complexity 3 75 0 1321 167 0 0 chr12 12895720 12895988 -131386501 - AluSg/x SINE Alu 0 348 81 28 0 0 0 chr12 12896076 12896104 -131386385 + AT_rich Low_complexity Low_complexity 1 28 0 2130 118 3 10 chr12 12896179 12896485 -131386004 + AluSx SINE Alu 1 304 -8 200 146 21 62 chr12 12897561 12897609 -131384880 - MIR SINE MIR -38 224 179 2124 112 0 26 chr12 12898157 12898460 -131384029 + AluSx SINE Alu 1 295 -17 433 263 233 25 chr12 12899251 12899491 -131382998 - L3 LINE CR1 -63 1514 1225 603 239 94 91 chr12 12899641 12899718 -131382771 + HAL1 LINE L1 14 89 -2418 1912 156 13 0 chr12 12899718 12900026 -131382463 + AluJb SINE Alu 1 312 0 603 239 94 91 chr12 12900026 12900300 -131382189 + HAL1 LINE L1 89 366 -2141 1073 236 128 33 chr12 12900317 12900834 -131381655 + HAL1 LINE L1 802 1367 -1140 2145 115 0 0 chr12 12900882 12901178 -131381311 - AluSg SINE Alu -14 296 1 304 256 39 31 chr12 12901268 12901397 -131381092 + L1M4 LINE L1 3960 4089 -2057 321 328 0 35 chr12 12901397 12901513 -131380976 + GA-rich Low_complexity Low_complexity 6 117 0 800 270 192 57 chr12 12901516 12902510 -131379979 + HAL1 LINE L1 1380 2507 0 1868 258 116 35 chr12 12902849 12904104 -131378385 + L1M4 LINE L1 3589 5093 -1053 531 130 71 110 chr12 12904108 12904262 -131378227 - L1PB4 LINE L1 0 6156 6009 559 271 53 14 chr12 12904265 12904472 -131378017 + L1M4 LINE L1 5084 5298 -848 427 91 0 91 chr12 12904497 12904574 -131377915 - AluJ/FRAM SINE Alu -24 288 219 1908 161 13 3 chr12 12904639 12904937 -131377552 + AluJo SINE Alu 2 302 -10 2811 59 14 0 chr12 12904989 12905345 -131377144 + L1PA6 LINE L1 5792 6152 -2 264 115 16 33 chr12 12905776 12905837 -131376652 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 2144 120 6 16 chr12 12905892 12906208 -131376281 - AluSq SINE Alu 0 313 1 491 307 110 20 chr12 12906424 12906724 -131375765 - L1ME LINE L1 -399 5722 5396 1790 88 118 8 chr12 12907148 12907410 -131375079 + AluSc SINE Alu 2 292 -17 1793 171 0 11 chr12 12907968 12908255 -131374234 + AluJo SINE Alu 3 286 -26 222 248 0 0 chr12 12908255 12908380 -131374109 + (TA)n Simple_repeat Simple_repeat 2 126 0 983 186 52 9 chr12 12909782 12909992 -131372497 + MER20 DNA MER1_type 1 219 0 646 301 136 11 chr12 12911365 12911651 -131370838 - L3 LINE CR1 -872 705 384 286 298 126 10 chr12 12911769 12911902 -131370587 + MIR SINE MIR 42 185 -61 38 51 0 0 chr12 12911942 12912001 -131370488 + AT_rich Low_complexity Low_complexity 1 59 0 844 97 9 0 chr12 12912001 12912114 -131370375 - FLAM_C SINE Alu -25 118 5 25 0 0 0 chr12 12912118 12912143 -131370346 + AT_rich Low_complexity Low_complexity 1 25 0 2318 105 48 0 chr12 12912280 12912613 -131369876 + THE1A LTR MaLR 1 349 -6 1906 105 0 0 chr12 12912613 12912861 -131369628 - AluSg SINE Alu -62 248 1 649 189 0 0 chr12 12913483 12913594 -131368895 + FLAM_C SINE Alu 1 111 -32 577 315 115 0 chr12 12914200 12914365 -131368124 + MER91A DNA MER1_type 1 184 -12 1214 284 160 7 chr12 12914386 12914812 -131367677 + L2 LINE L2 2805 3295 -18 702 233 0 0 chr12 12914860 12914993 -131367496 + FLAM_A SINE Alu 1 133 0 180 283 0 0 chr12 12915144 12915190 -131367299 - MIR SINE MIR -112 150 105 2066 128 0 0 chr12 12915190 12915495 -131366994 + AluSx SINE Alu 1 305 0 223 274 0 0 chr12 12916093 12916144 -131366345 - MIR SINE MIR -148 114 64 941 266 26 117 chr12 12916178 12916814 -131365675 - L2 LINE L2 0 3313 2748 492 300 140 30 chr12 12916809 12917109 -131365380 + L2 LINE L2 1769 2101 -1213 * 593 221 23 81 chr12 12917177 12917349 -131365140 + MER58A DNA MER1_type 16 177 -47 218 299 165 10 chr12 12917367 12917464 -131365025 + L2 LINE L2 2158 2269 -1045 442 261 109 33 chr12 12917489 12917673 -131364816 + L2 LINE L2 2448 2645 -669 509 237 37 15 chr12 12917697 12917832 -131364657 - MIR SINE MIR -60 202 65 1670 179 7 3 chr12 12918603 12918888 -131363601 - AluJo SINE Alu -14 298 13 23 54 0 0 chr12 12920249 12920286 -131362203 + AT_rich Low_complexity Low_complexity 1 37 0 315 277 41 49 chr12 12920938 12921066 -131361423 - MIR SINE MIR -67 141 49 2127 110 0 17 chr12 12921546 12921847 -131360642 - AluSg SINE Alu -14 296 1 211 292 44 71 chr12 12923176 12923258 -131359231 - MIR SINE MIR -34 228 148 2159 119 0 3 chr12 12923258 12923553 -131358936 - AluSx SINE Alu -18 294 1 211 292 44 71 chr12 12923553 12923583 -131358906 - MIR SINE MIR -114 148 119 2275 85 7 0 chr12 12924128 12924422 -131358067 + AluSg SINE Alu 1 296 -14 324 0 0 0 chr12 12925196 12925232 -131357257 + (A)n Simple_repeat Simple_repeat 1 36 0 1601 181 4 8 chr12 12927092 12927357 -131355132 + AluJo SINE Alu 1 264 -48 2399 65 0 3 chr12 12927640 12927931 -131354558 + AluSc SINE Alu 3 292 -17 22 70 0 0 chr12 12928122 12928165 -131354324 + AT_rich Low_complexity Low_complexity 1 43 0 908 217 95 70 chr12 12929044 12929223 -131353266 - MER46C DNA MER2_type -1 337 144 2133 109 3 0 chr12 12929223 12929536 -131352953 + AluSq SINE Alu 1 314 0 908 217 95 70 chr12 12929536 12929682 -131352807 - MER46C DNA MER2_type -194 144 3 886 181 34 124 chr12 12930229 12930343 -131352146 - MER33 DNA MER1_type -2261 324 201 1852 134 15 0 chr12 12930343 12930612 -131351877 + AluSx SINE Alu 15 287 -25 886 181 34 124 chr12 12930612 12930851 -131351638 - MER33 DNA MER1_type -2384 201 3 369 0 0 0 chr12 12931068 12931109 -131351380 + (CA)n Simple_repeat Simple_repeat 1 41 0 2226 84 0 20 chr12 12931511 12931848 -131350641 + AluY SINE Alu 1 331 0 1741 181 0 10 chr12 12933621 12933919 -131348570 - AluJb SINE Alu -17 295 1 700 137 14 72 chr12 12933919 12934058 -131348431 - AluJo SINE Alu -177 135 5 2204 105 7 0 chr12 12934391 12934687 -131347802 - AluSx SINE Alu -14 298 1 2208 120 0 0 chr12 12935383 12935684 -131346805 + AluSx SINE Alu 1 301 -11 2160 98 6 28 chr12 12935684 12936038 -131346451 + AluY SINE Alu 1 311 0 2341 86 7 0 chr12 12937120 12937422 -131345067 - AluSq SINE Alu -9 304 1 285 128 0 0 chr12 12938154 12938201 -131344288 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 223 128 51 0 chr12 12938281 12938320 -131344169 + (TATG)n Simple_repeat Simple_repeat 2 42 0 294 147 0 0 chr12 12939640 12939708 -131342781 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 186 43 0 0 chr12 12940514 12940537 -131341952 + (T)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr12 12941797 12941827 -131340662 + AT_rich Low_complexity Low_complexity 1 30 0 610 176 0 44 chr12 12942126 12942262 -131340227 + L1MB7 LINE L1 6044 6173 -11 362 251 301 10 chr12 12942362 12942561 -131339928 + MIR SINE MIR 6 262 0 207 0 0 0 chr12 12944666 12944689 -131337800 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1751 155 41 14 chr12 12945289 12945580 -131336909 + AluJb SINE Alu 1 299 -13 2296 88 3 10 chr12 12946117 12946423 -131336066 - AluSq SINE Alu -9 304 1 1883 133 4 4 chr12 12946659 12946930 -131335559 - AluSx SINE Alu -15 297 27 1003 92 0 0 chr12 12946935 12947066 -131335423 - AluSg/x SINE Alu -12 300 170 2418 71 3 7 chr12 12948206 12948514 -131333975 + AluSg1 SINE Alu 1 307 -2 213 279 0 33 chr12 12948625 12948686 -131333803 + GA-rich Low_complexity Low_complexity 2 60 0 256 293 194 31 chr12 12949423 12949614 -131332875 + MIR SINE MIR 11 232 -30 2267 96 3 3 chr12 12949785 12950077 -131332412 - AluSx SINE Alu -20 292 1 25 65 0 0 chr12 12952124 12952170 -131330319 + AT_rich Low_complexity Low_complexity 1 46 0 4822 253 84 31 chr12 12952212 12954521 -131327968 + L1MEc LINE L1 1734 4109 -2106 376 257 36 117 chr12 12954535 12954757 -131327732 - L1ME3 LINE L1 0 6162 5959 6376 141 28 5 chr12 12954878 12956872 -131325617 - L1MA5A LINE L1 -7 6290 4255 1837 230 93 58 chr12 12956961 12957683 -131324806 - L1MC5 LINE L1 -541 7420 6674 1486 147 4 9 chr12 12958038 12958269 -131324220 + AluJb SINE Alu 1 230 -82 1529 129 28 0 chr12 12958274 12958491 -131323998 - AluSq SINE Alu -88 225 3 2321 97 3 0 chr12 12958799 12959098 -131323391 - AluSx SINE Alu 0 312 13 28 29 0 0 chr12 12959167 12959202 -131323287 + AT_rich Low_complexity Low_complexity 1 35 0 2419 90 0 3 chr12 12959960 12960271 -131322218 + AluSg SINE Alu 1 310 0 232 237 13 53 chr12 12961466 12961542 -131320947 + (CTATT)n Simple_repeat Simple_repeat 4 76 0 616 229 137 44 chr12 12962481 12962539 -131319950 + MER58A DNA MER1_type 1 52 -2368 1705 172 4 4 chr12 12962539 12962846 -131319643 + AluJb SINE Alu 3 309 0 616 229 137 44 chr12 12962846 12962990 -131319499 + MER58A DNA MER1_type 52 224 0 382 204 94 105 chr12 12963053 12963234 -131319255 - MER20B DNA MER1_type -604 179 1 2102 113 0 11 chr12 12963761 12964079 -131318410 + AluSc SINE Alu 1 315 0 1457 267 47 64 chr12 12964135 12964779 -131317710 + L1MC4 LINE L1 7168 7800 -242 400 77 0 0 chr12 12964917 12964969 -131317520 + Alu SINE Alu 1 52 -247 2200 70 20 37 chr12 12964969 12965268 -131317221 + AluSq SINE Alu 20 313 0 2046 115 39 16 chr12 12965323 12965628 -131316861 + AluSx SINE Alu 1 312 0 499 280 80 14 chr12 12965841 12966045 -131316444 - MIR SINE MIR -23 239 27 1671 184 78 0 chr12 12966173 12966493 -131315996 + MER7A DNA MER2_type 3 345 -1 2500 63 0 3 chr12 12966537 12966840 -131315649 + AluY SINE Alu 1 302 -9 707 185 7 41 chr12 12966903 12967049 -131315440 + FLAM_C SINE Alu 1 141 -2 380 310 53 53 chr12 12967229 12967508 -131314981 + L1M4b LINE L1 97 804 -6055 1622 118 0 65 chr12 12967515 12967778 -131314711 + AluSc SINE Alu 3 248 -61 228 35 0 0 chr12 12967797 12967826 -131314663 + (TAA)n Simple_repeat Simple_repeat 2 30 0 251 233 83 42 chr12 12968237 12968357 -131314132 + L1M4b LINE L1 1239 1363 -5496 * 869 208 93 45 chr12 12968337 12968687 -131313802 + L1ME2 LINE L1 5774 6161 -5 213 315 41 14 chr12 12968730 12968803 -131313686 + L2 LINE L2 3015 3089 -183 257 374 169 24 chr12 12970021 12970358 -131312131 - L2 LINE L2 -25 3247 2862 2002 126 0 24 chr12 12971431 12971725 -131310764 + AluSg SINE Alu 1 287 -23 331 246 60 90 chr12 12972383 12972517 -131309972 + L2 LINE L2 3169 3298 -15 38 22 0 0 chr12 12973538 12973583 -131308906 + AT_rich Low_complexity Low_complexity 1 45 0 2001 174 107 9 chr12 12975014 12975433 -131307056 + LOR1b LTR ERV1 1 460 -1 853 94 0 0 chr12 12975692 12975825 -131306664 - AluSq SINE Alu 0 310 178 879 40 0 0 chr12 12975826 12975927 -131306562 - AluSq SINE Alu -212 101 1 2188 101 7 0 chr12 12976006 12976293 -131306196 + AluSq SINE Alu 1 289 -24 292 313 78 57 chr12 12976673 12976865 -131305624 - L2 LINE L2 -702 2612 2417 183 80 0 0 chr12 12976933 12976958 -131305531 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 206 103 51 0 chr12 12977096 12977135 -131305354 + C-rich Low_complexity Low_complexity 1 41 0 3612 136 4 2 chr12 12977327 12977851 -131304638 + MER1A DNA MER1_type 3 527 0 2391 206 70 39 chr12 12977885 12978469 -131304020 + L1M4 LINE L1 4714 5278 -896 1565 187 3 18 chr12 12978469 12978796 -131303693 + AluJo SINE Alu 3 325 0 2391 206 70 39 chr12 12978796 12978959 -131303530 + L1M4 LINE L1 5278 5477 -697 814 196 0 25 chr12 12978959 12979122 -131303367 + FRAM SINE Alu 1 159 -7 2391 206 70 39 chr12 12979122 12979233 -131303256 + L1M4 LINE L1 5477 5583 -591 840 74 9 0 chr12 12979233 12979341 -131303148 + AluSq/x SINE Alu 1 109 -203 364 182 0 0 chr12 12979344 12979410 -131303079 + Alu SINE Alu 228 293 -7 2155 92 10 7 chr12 12979474 12979779 -131302710 - AluSc SINE Alu -3 306 1 239 299 7 118 chr12 12979948 12980092 -131302397 + LTR67 LTR ERVL 24 151 -406 2133 124 0 3 chr12 12980281 12980580 -131301909 + AluSx SINE Alu 1 298 -14 480 250 94 44 chr12 12980681 12980861 -131301628 + LTR67 LTR ERVL 362 550 -7 1976 158 0 3 chr12 12980866 12981176 -131301313 - AluJb SINE Alu -3 309 1 583 264 11 51 chr12 12981782 12981960 -131300529 - MER5B DNA MER1_type -7 171 1 2404 84 3 6 chr12 12982560 12982871 -131299618 + AluSx SINE Alu 1 310 -2 745 108 20 0 chr12 12982887 12982989 -131299500 - Tigger7 DNA MER2_type -19 2568 2465 2441 158 17 52 chr12 12984019 12984539 -131297950 - L1MC3 LINE L1 -1203 6582 6081 2050 93 0 28 chr12 12985199 12985488 -131297001 + AluSx SINE Alu 1 281 -31 2737 263 70 58 chr12 12985510 12985872 -131296617 + L1MCa LINE L1 46 402 -6024 2118 125 0 0 chr12 12985872 12986161 -131296328 + AluSx SINE Alu 7 295 -17 2737 263 70 58 chr12 12986161 12986963 -131295526 + L1MCa LINE L1 402 1223 -5203 7828 154 136 54 chr12 12987126 12987482 -131295007 + L1MCa LINE L1 51 376 -6050 2135 124 0 0 chr12 12987482 12987773 -131294716 + AluSx SINE Alu 7 297 -15 7828 154 136 54 chr12 12987773 12988560 -131293929 + L1MCa LINE L1 376 1097 -5329 649 146 39 0 chr12 12988560 12988663 -131293826 + U6 snRNA snRNA 1 107 0 7828 154 136 54 chr12 12988663 12989286 -131293203 + L1MCa LINE L1 1097 1991 -4435 2303 110 0 3 chr12 12989286 12989595 -131292894 - AluSq SINE Alu -5 308 1 7828 154 136 54 chr12 12989595 12989743 -131292746 + L1MCa LINE L1 1991 2125 -4301 249 153 51 51 chr12 12989742 12989801 -131292688 + L1MC1 LINE L1 6275 6333 0 * 1935 119 31 7 chr12 12989975 12990269 -131292220 + AluSx SINE Alu 1 301 -11 2038 123 32 41 chr12 12990400 12990740 -131291749 + MER1B DNA MER1_type 1 337 0 2300 113 3 0 chr12 12990975 12991286 -131291203 + AluSp SINE Alu 1 312 -1 1147 261 98 89 chr12 12992577 12992787 -131289702 + L1MEd LINE L1 1 208 -5911 2451 91 0 0 chr12 12992787 12993095 -131289394 + AluSg SINE Alu 1 308 -2 1147 261 98 89 chr12 12993095 12993443 -131289046 + L1MEd LINE L1 208 564 -5555 236 189 38 0 chr12 12993489 12993509 -131288980 + AluSp SINE Alu 115 136 -167 247 154 0 0 chr12 12993509 12993548 -131288941 + Alu SINE Alu 2 40 -262 1743 170 55 0 chr12 12993625 12993914 -131288575 + AluJb SINE Alu 7 311 -1 347 133 50 0 chr12 12993914 12993974 -131288515 + L1ME2 LINE L1 6092 6154 -10 2276 97 0 3 chr12 12993988 12994287 -131288202 + AluY SINE Alu 1 298 -13 560 293 78 34 chr12 12994290 12994611 -131287878 + L1MEd LINE L1 563 897 -5222 286 273 86 78 chr12 12994931 12995074 -131287415 + L1MC5 LINE L1 7262 7402 -559 2257 100 0 3 chr12 12995074 12995365 -131287124 + AluY SINE Alu 3 292 -19 286 273 86 78 chr12 12995365 12995733 -131286756 + L1MC5 LINE L1 7402 7777 -184 659 196 43 0 chr12 12995753 12995891 -131286598 + L1MC4a LINE L1 5732 5875 -1933 2225 99 10 0 chr12 12995894 12996187 -131286302 + AluSp SINE Alu 1 296 -17 1180 125 0 0 chr12 12996187 12996347 -131286142 + AluSg/x SINE Alu 134 293 -19 263 209 35 23 chr12 12996347 12996433 -131286056 + L1MC4a LINE L1 5869 5955 -1853 2148 111 17 0 chr12 12996437 12996726 -131285763 + AluSg SINE Alu 1 294 -16 684 236 8 44 chr12 12996761 12997011 -131285478 + L1MC4a LINE L1 5930 6170 -1638 * 2485 178 20 102 chr12 12997004 12997334 -131285155 + L1MC4a LINE L1 6379 6734 -1074 2421 80 3 3 chr12 12997334 12997646 -131284843 + AluSp SINE Alu 1 312 -1 2485 178 20 102 chr12 12997646 12997830 -131284659 + L1MC4a LINE L1 6734 6831 -977 2276 56 0 7 chr12 12997830 12998148 -131284341 + AluY SINE Alu 1 316 0 2485 178 20 102 chr12 12998148 12998289 -131284200 + L1MC4a LINE L1 6831 6982 -826 2936 188 149 38 chr12 12998296 12999055 -131283434 - MER21B LTR ERV1 -2 861 19 535 149 11 11 chr12 12999080 12999167 -131283322 - MER21B LTR ERV1 -776 87 1 3149 198 84 19 chr12 12999167 12999936 -131282553 + L1MC4a LINE L1 6978 7796 -12 443 272 95 43 chr12 12999994 13000680 -131281809 + L1MEd LINE L1 910 1668 -4517 250 268 0 73 chr12 13000941 13001023 -131281466 + MIR3 SINE MIR 117 192 -16 205 167 0 0 chr12 13001914 13001950 -131280539 + (CA)n Simple_repeat Simple_repeat 2 37 0 2268 82 3 0 chr12 13002178 13002486 -131280003 + AluY SINE Alu 1 309 0 21 0 0 0 chr12 13003338 13003359 -131279130 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 13005228 13005250 -131277239 + AT_rich Low_complexity Low_complexity 1 22 0 840 110 8 39 chr12 13005518 13005645 -131276844 + AluJb SINE Alu 3 125 -187 1133 135 0 0 chr12 13005648 13005804 -131276685 - AluSg/x SINE Alu -23 289 134 835 197 13 7 chr12 13005822 13005974 -131276515 + AluJb SINE Alu 135 287 -25 2392 214 56 62 chr12 13006770 13007485 -131275004 + L1ME1 LINE L1 5452 6162 -4 877 174 38 80 chr12 13007745 13007883 -131274606 + MER3 DNA MER1_type 6 133 -76 2328 87 0 13 chr12 13007883 13008193 -131274296 - AluSq SINE Alu -7 306 1 877 174 38 80 chr12 13008193 13008266 -131274223 + MER3 DNA MER1_type 133 208 -1 1374 129 188 28 chr12 13008317 13008572 -131273917 + AluJo SINE Alu 1 296 -16 224 294 0 15 chr12 13009478 13009546 -131272943 - L3 LINE CR1 -23 1554 1488 2694 36 3 0 chr12 13010358 13010666 -131271823 - AluY SINE Alu -2 309 1 567 0 0 0 chr12 13011558 13011621 -131270868 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 212 361 130 25 chr12 13011734 13012019 -131270470 + L2 LINE L2 2350 2664 -650 2110 117 3 0 chr12 13012518 13012808 -131269681 - AluSx SINE Alu -21 291 1 2085 130 3 7 chr12 13012811 13013118 -131269371 - AluSx SINE Alu -6 306 1 2266 97 0 16 chr12 13013243 13013554 -131268935 - AluY SINE Alu -5 306 1 817 222 53 76 chr12 13013565 13013764 -131268725 + MER31-int LTR ERV1 2457 2659 -2277 1530 156 30 86 chr12 13013764 13014065 -131268424 - AluJo SINE Alu -22 290 7 817 222 53 76 chr12 13014065 13014411 -131268078 + MER31-int LTR ERV1 2659 3025 -1911 2128 123 3 0 chr12 13014869 13015171 -131267318 + AluSx SINE Alu 1 303 -9 2387 40 4 0 chr12 13015312 13015584 -131266905 - L1PA5 LINE L1 -1 6153 5881 4138 188 50 59 chr12 13015618 13015748 -131266741 + MER31-int LTR ERV1 3171 3301 -1635 2098 138 3 3 chr12 13015748 13016060 -131266429 + AluJb SINE Alu 1 312 0 4138 188 50 59 chr12 13016060 13016963 -131265526 + MER31-int LTR ERV1 3301 4195 -741 1030 260 46 65 chr12 13017023 13017439 -131265050 + MER92A LTR ERV1 1 408 -4 1971 132 16 16 chr12 13017453 13017757 -131264732 - AluSx SINE Alu -8 304 1 565 118 20 10 chr12 13018163 13018409 -131264080 + AluJb SINE Alu 1 298 -14 1984 132 11 0 chr12 13018413 13018700 -131263789 + AluSx SINE Alu 1 290 -22 1918 149 92 21 chr12 13018790 13019172 -131263317 + L1MB7 LINE L1 5776 6184 0 2480 53 3 13 chr12 13019183 13019487 -131263002 + AluY SINE Alu 1 301 -10 180 111 0 0 chr12 13019511 13019538 -131262951 + (A)n Simple_repeat Simple_repeat 1 27 0 1860 123 0 83 chr12 13019546 13019871 -131262618 + AluJb SINE Alu 1 298 -14 1461 171 80 11 chr12 13020009 13020284 -131262205 - AluJb SINE Alu -14 298 5 2126 111 0 3 chr12 13020879 13021168 -131261321 + AluSx SINE Alu 14 301 -11 23 0 0 0 chr12 13021586 13021609 -131260880 + AT_rich Low_complexity Low_complexity 1 23 0 2395 62 3 3 chr12 13021983 13022287 -131260202 + AluY SINE Alu 1 304 -7 228 273 292 13 chr12 13022505 13022659 -131259830 - MIR SINE MIR 0 262 66 2357 43 60 0 chr12 13023025 13023306 -131259183 + AluY SINE Alu 1 298 -13 538 178 10 10 chr12 13023486 13023587 -131258902 + MER103 DNA DNA 15 115 -51 185 268 196 0 chr12 13023606 13023662 -131258827 - MIR SINE MIR -112 96 30 2357 86 0 13 chr12 13023847 13023983 -131258506 + AluSx SINE Alu 1 137 -175 2170 138 0 0 chr12 13023983 13024295 -131258194 + AluSx SINE Alu 1 312 0 2357 86 0 13 chr12 13024295 13024460 -131258029 + AluSx SINE Alu 137 298 -14 287 333 139 0 chr12 13024610 13024718 -131257771 + L2 LINE L2 3150 3272 0 196 385 74 7 chr12 13024722 13024857 -131257632 + MIR3 SINE MIR 58 201 -7 2347 87 0 35 chr12 13024858 13025169 -131257320 + AluSp SINE Alu 1 300 -13 1984 69 91 4 chr12 13025180 13025454 -131257035 + AluY SINE Alu 1 298 -13 1566 177 34 0 chr12 13025466 13025731 -131256758 + AluJb SINE Alu 20 293 -19 1290 153 85 85 chr12 13025748 13026043 -131256446 + AluJo SINE Alu 1 295 -17 291 338 40 14 chr12 13026148 13026296 -131256193 - MIR SINE MIR -64 198 47 301 268 12 0 chr12 13028418 13028500 -131253989 + C-rich Low_complexity Low_complexity 1 83 0 21 0 0 0 chr12 13028773 13028794 -131253695 + GC_rich Low_complexity Low_complexity 1 21 0 406 277 36 32 chr12 13029990 13030187 -131252302 - MIR SINE MIR -51 211 20 2241 83 0 19 chr12 13030361 13030673 -131251816 + AluSg SINE Alu 1 306 -4 396 212 94 0 chr12 13030678 13030763 -131251726 + MER69 DNA AcHobo 47 139 -1087 353 91 0 0 chr12 13030798 13030842 -131251647 + MER69 DNA AcHobo 2482 2525 -1 2578 55 0 0 chr12 13030869 13031180 -131251309 + AluY SINE Alu 1 311 0 2304 104 3 0 chr12 13031304 13031611 -131250878 - AluSp SINE Alu -5 308 1 203 214 18 18 chr12 13031666 13031722 -131250767 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 359 333 31 0 chr12 13031938 13032034 -131250455 - L2 LINE L2 -25 3247 3149 2033 156 0 0 chr12 13032080 13032387 -131250102 + AluJb SINE Alu 2 308 -4 952 161 0 0 chr12 13032442 13032591 -131249898 + AluSg/x SINE Alu 137 285 -27 217 0 0 0 chr12 13032591 13032615 -131249874 + (CAAAA)n Simple_repeat Simple_repeat 2 100 0 188 419 50 15 chr12 13032618 13032816 -131249673 - L2 LINE L2 -236 3036 2832 2078 128 0 0 chr12 13033161 13033466 -131249023 + AluSx SINE Alu 1 305 -7 2353 66 0 7 chr12 13033466 13033769 -131248720 + AluY SINE Alu 1 301 -10 2263 74 7 16 chr12 13033792 13034102 -131248387 + AluSq SINE Alu 1 307 -6 2232 78 3 3 chr12 13034305 13034601 -131247888 + AluSx SINE Alu 1 296 -16 268 300 146 80 chr12 13034694 13035057 -131247432 - L2 LINE L2 -1410 1904 1518 476 204 10 19 chr12 13035125 13035228 -131247261 + MER69 DNA AcHobo 47 148 -2378 254 185 49 37 chr12 13035220 13035301 -131247188 + MER69 DNA AcHobo 2444 2525 -1 * 275 296 71 53 chr12 13035347 13035516 -131246973 - L2 LINE L2 -1890 1424 1253 1888 97 3 121 chr12 13035586 13035925 -131246564 - AluSg SINE Alu -1 299 1 2137 90 27 0 chr12 13035938 13036239 -131246250 - AluY SINE Alu -2 309 1 777 138 0 90 chr12 13036251 13036396 -131246093 - AluSq/x SINE Alu -179 133 2 2247 99 3 0 chr12 13036512 13036824 -131245665 + AluSp SINE Alu 1 313 0 2120 122 0 3 chr12 13037082 13037393 -131245096 + AluSg SINE Alu 1 310 0 379 210 0 0 chr12 13037410 13037491 -131244998 + L1MD3 LINE L1 6446 6526 -1469 4776 226 55 52 chr12 13037512 13037806 -131244683 + L1M4 LINE L1 4 296 -6279 2558 135 36 7 chr12 13037806 13038220 -131244269 - MSTB LTR MaLR 0 426 1 4776 226 55 52 chr12 13038220 13038675 -131243814 + L1M4 LINE L1 296 748 -5827 2044 117 0 7 chr12 13038675 13038973 -131243516 + AluSc SINE Alu 1 296 -13 4776 226 55 52 chr12 13038973 13039425 -131243064 + L1M4 LINE L1 748 1198 -5377 2148 125 0 0 chr12 13039425 13039728 -131242761 + AluSx SINE Alu 1 303 -9 4776 226 55 52 chr12 13039728 13040119 -131242370 + L1M4 LINE L1 1198 1587 -4988 1946 130 0 27 chr12 13040119 13040419 -131242070 - AluSx SINE Alu -20 292 1 4776 226 55 52 chr12 13040419 13040464 -131242025 + L1M4 LINE L1 1587 2050 -4525 640 219 77 41 chr12 13040466 13040662 -131241827 + L1MC4 LINE L1 6523 6725 -1317 417 183 0 0 chr12 13040665 13040736 -131241753 - LTR16B LTR ERVL 0 464 394 1726 232 124 7 chr12 13040743 13041161 -131241328 + MLT1F LTR MaLR 11 477 -65 1265 121 25 107 chr12 13041163 13041232 -131241257 - Tigger2 DNA MER2_type 0 2718 2645 1950 106 0 56 chr12 13041232 13041401 -131241088 - AluSx SINE Alu -18 294 148 2097 112 0 0 chr12 13041401 13041697 -131240792 - AluSc SINE Alu -13 296 1 1950 106 0 56 chr12 13041697 13041829 -131240660 - AluSx SINE Alu -164 148 10 1265 121 25 107 chr12 13041829 13042040 -131240449 - Tigger2 DNA MER2_type -73 2645 2461 4802 139 5 4 chr12 13042102 13042850 -131239639 - Tigger2 DNA MER2_type -1969 749 1 326 121 17 17 chr12 13042853 13042911 -131239578 + MLT1F LTR MaLR 484 541 -1 1377 259 39 19 chr12 13042915 13043278 -131239211 - LTR16B LTR ERVL -94 370 1 1794 176 6 36 chr12 13043281 13043339 -131239150 + L1MC4 LINE L1 6727 6785 -1257 2207 100 0 3 chr12 13043339 13043639 -131238850 - AluSq SINE Alu -14 299 1 1794 176 6 36 chr12 13043639 13043937 -131238552 + L1MC4 LINE L1 6785 7072 -970 255 61 0 0 chr12 13043942 13043975 -131238514 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2234 246 47 4 chr12 13044021 13044557 -131237932 + L1MC4 LINE L1 7345 7903 -139 681 131 0 9 chr12 13045470 13045577 -131236912 + MER20 DNA MER1_type 39 144 -75 392 335 38 24 chr12 13045606 13045893 -131236596 + AluJb SINE Alu 1 291 -11 229 296 161 0 chr12 13046136 13046217 -131236272 - L2 LINE L2 -12 3301 3208 1537 150 7 25 chr12 13046241 13046515 -131235974 + AluJo SINE Alu 1 269 -43 1101 211 0 18 chr12 13046560 13046778 -131235711 - AluSq SINE Alu -99 214 1 328 268 0 0 chr12 13046778 13046849 -131235640 + AluJ/FRAM SINE Alu 221 291 -11 1232 193 35 48 chr12 13046855 13047171 -131235318 + AluJb SINE Alu 1 312 0 274 228 173 55 chr12 13047439 13047566 -131234923 - L2 LINE L2 -4 3309 3168 1865 94 8 4 chr12 13047599 13047853 -131234636 - AluSc SINE Alu -54 255 1 1321 78 152 0 chr12 13047853 13048003 -131234486 + MLT2A1 LTR ERVL 225 411 -33 468 0 0 0 chr12 13048003 13048055 -131234434 + (TA)n Simple_repeat Simple_repeat 2 53 0 1321 78 152 0 chr12 13048055 13048095 -131234394 + MLT2A1 LTR ERVL 411 444 0 2190 102 0 13 chr12 13048120 13048423 -131234066 + AluSq SINE Alu 1 299 -14 211 154 26 0 chr12 13048424 13048463 -131234026 - MIR SINE MIR -107 155 116 570 237 36 0 chr12 13048819 13048958 -131233531 - Charlie4a DNA MER1_type -9 499 356 4844 160 44 43 chr12 13048973 13049078 -131233411 + L1MC2 LINE L1 4461 4564 -1780 2246 65 7 0 chr12 13049078 13049368 -131233121 + AluY SINE Alu 1 292 -19 4844 160 44 43 chr12 13049368 13050101 -131232388 + L1MC2 LINE L1 4564 5295 -1049 3357 110 60 8 chr12 13050101 13050602 -131231887 - MER1A DNA MER1_type 0 527 1 4844 160 44 43 chr12 13050602 13050865 -131231624 + L1MC2 LINE L1 5295 5556 -788 2245 103 0 13 chr12 13050865 13051175 -131231314 + AluSx SINE Alu 3 308 -4 4844 160 44 43 chr12 13051175 13051786 -131230703 + L1MC2 LINE L1 5556 6155 -189 304 223 204 0 chr12 13051900 13052003 -131230486 - MIR SINE MIR -3 259 136 1053 177 181 7 chr12 13052017 13052294 -131230195 - Charlie4a DNA MER1_type -163 345 21 408 154 0 164 chr12 13053950 13054060 -131228429 + L2 LINE L2 3181 3272 0 2067 111 0 13 chr12 13054677 13054993 -131227496 - AluSx SINE Alu 0 312 1 29 79 0 11 chr12 13055057 13055115 -131227374 + AT_rich Low_complexity Low_complexity 1 59 -29 1685 167 10 35 chr12 13055115 13055291 -131227198 - AluJo SINE Alu -9 303 137 2246 103 0 0 chr12 13055291 13055593 -131226896 - AluSx SINE Alu -8 304 3 1685 167 10 35 chr12 13055593 13055727 -131226762 - AluJo SINE Alu -175 137 1 29 79 0 11 chr12 13055727 13055757 -131226732 + AT_rich Low_complexity Low_complexity 59 88 0 2225 78 0 0 chr12 13055900 13056225 -131226264 + AluY SINE Alu 1 325 0 1703 147 7 25 chr12 13056350 13056635 -131225854 + AluJo SINE Alu 1 280 -32 229 340 81 43 chr12 13056863 13057048 -131225441 - L2 LINE L2 -480 2834 2643 322 262 0 0 chr12 13057275 13057336 -131225153 + MIR SINE MIR 56 116 -146 347 312 40 32 chr12 13057596 13057721 -131224768 + L2 LINE L2 3147 3272 0 1792 134 46 65 chr12 13057749 13058033 -131224456 - L1MB8 LINE L1 -7 6171 5896 2299 63 0 10 chr12 13058033 13058335 -131224154 - AluY SINE Alu -12 299 1 1792 134 46 65 chr12 13058335 13058484 -131224005 - L1MB8 LINE L1 -282 5896 5746 223 336 78 9 chr12 13058712 13058828 -131223661 + L2 LINE L2 2946 3069 -203 2498 49 0 3 chr12 13059100 13059404 -131223085 - AluY SINE Alu -8 303 1 223 230 32 75 chr12 13059827 13059962 -131222527 + MIR SINE MIR 26 198 -64 21 0 0 0 chr12 13060215 13060236 -131222253 + GC_rich Low_complexity Low_complexity 1 21 0 556 151 25 67 chr12 13062361 13062451 -131220038 + FLAM_A SINE Alu 22 107 -204 2218 91 14 0 chr12 13062451 13062748 -131219741 - AluSx SINE Alu -11 301 1 556 151 25 67 chr12 13062748 13062776 -131219713 + FLAM_A SINE Alu 107 135 -176 222 266 64 37 chr12 13062963 13063072 -131219417 + MIR SINE MIR 77 188 -74 2098 119 3 0 chr12 13063168 13063461 -131219028 + AluSg SINE Alu 1 294 -16 1398 167 44 63 chr12 13063479 13063796 -131218693 - AluJb SINE Alu -1 311 1 2130 113 0 0 chr12 13063806 13064107 -131218382 - AluSx SINE Alu -11 301 1 907 286 119 3 chr12 13064495 13064789 -131217700 + L2 LINE L2 2967 3294 -19 1004 83 28 0 chr12 13065503 13065647 -131216842 - L1PA5 LINE L1 0 6154 6007 2110 83 16 35 chr12 13065723 13066037 -131216452 - AluSx SINE Alu -4 308 1 1354 139 109 33 chr12 13066037 13066179 -131216310 - AluSx SINE Alu -7 305 175 210 37 0 0 chr12 13066179 13066206 -131216283 + (TG)n Simple_repeat Simple_repeat 2 28 0 1354 139 109 33 chr12 13066206 13066337 -131216152 - AluSx SINE Alu -137 175 11 702 235 5 80 chr12 13066343 13066543 -131215946 + LTR39 LTR ERV1 599 783 0 2497 56 0 0 chr12 13066888 13067190 -131215299 + AluY SINE Alu 1 302 -9 274 324 78 0 chr12 13067254 13067356 -131215133 - MIR SINE MIR 0 262 153 315 226 12 36 chr12 13067661 13067745 -131214744 + L1MC3 LINE L1 6571 6652 -1133 2176 93 0 3 chr12 13067751 13068041 -131214448 - AluSc SINE Alu -20 289 1 1718 159 9 22 chr12 13068052 13068367 -131214122 - AluJo SINE Alu -1 311 1 1496 147 52 18 chr12 13068708 13068994 -131213495 + AluJb SINE Alu 1 296 -16 405 0 0 0 chr12 13068995 13069040 -131213449 + (CA)n Simple_repeat Simple_repeat 2 46 0 2410 68 0 7 chr12 13069075 13069385 -131213104 - AluY SINE Alu -3 308 1 481 257 192 24 chr12 13069389 13069829 -131212660 - L1ME4a LINE L1 -3 6118 5600 183 80 0 0 chr12 13069881 13069906 -131212583 + (T)n Simple_repeat Simple_repeat 1 25 0 1577 140 53 4 chr12 13069917 13070181 -131212308 - AluSx SINE Alu -4 308 32 608 196 7 20 chr12 13070184 13070337 -131212152 - Charlie1 DNA MER1_type -28 2733 2583 1065 93 0 0 chr12 13070664 13070803 -131211686 + AluSg1 SINE Alu 1 139 -170 2028 128 0 0 chr12 13070803 13071099 -131211390 + AluSx SINE Alu 1 296 -16 237 239 17 40 chr12 13071117 13071234 -131211255 - MIR SINE MIR -56 206 94 373 202 32 32 chr12 13071488 13071582 -131210907 + MER89 LTR ERV1 9 102 -457 1208 181 41 49 chr12 13071583 13071656 -131210833 + MER89 LTR ERV1 272 344 -215 2014 113 31 0 chr12 13071656 13071824 -131210665 - AluSg SINE Alu -8 302 120 180 0 0 0 chr12 13071824 13071844 -131210645 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 2014 113 31 0 chr12 13071844 13071968 -131210521 - AluSg SINE Alu -190 120 1 1208 181 41 49 chr12 13071968 13072160 -131210329 + MER89 LTR ERV1 344 535 -24 266 267 56 72 chr12 13072179 13072359 -131210130 - MIR SINE MIR 0 262 86 1849 147 3 25 chr12 13073227 13073546 -131208943 + AluJo SINE Alu 1 312 0 529 165 0 0 chr12 13073710 13073795 -131208694 - FLAM SINE Alu -19 124 40 3167 77 18 40 chr12 13073885 13074273 -131208216 + MLT2A1 LTR ERVL 1 379 -65 381 93 0 0 chr12 13074273 13074327 -131208162 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 3167 77 18 40 chr12 13074327 13074392 -131208097 + MLT2A1 LTR ERVL 379 444 0 396 151 41 14 chr12 13075195 13075268 -131207221 + AluJb SINE Alu 197 271 -31 322 123 46 0 chr12 13075285 13075350 -131207139 + G-rich Low_complexity Low_complexity 4 71 0 * 852 102 4 49 chr12 13075341 13075626 -131206863 + (GGGGA)n Simple_repeat Simple_repeat 1 271 0 432 299 122 66 chr12 13075986 13076364 -131206125 - L2 LINE L2 -4 3268 2870 192 336 8 55 chr12 13076645 13076773 -131205716 - L2 LINE L2 -791 2523 2402 2141 97 3 7 chr12 13076963 13077262 -131205227 + AluSx SINE Alu 1 298 -14 1871 123 10 10 chr12 13077276 13077569 -131204920 + AluSq SINE Alu 14 306 -7 1769 157 11 0 chr12 13077578 13077884 -131204605 + AluJo SINE Alu 1 309 0 496 185 141 30 chr12 13077999 13078134 -131204355 + MIR SINE MIR 85 234 -28 486 145 40 0 chr12 13078142 13078218 -131204271 - AluY SINE Alu -22 289 211 1237 60 0 0 chr12 13078219 13078369 -131204120 - AluSq/x SINE Alu -162 150 1 606 280 125 57 chr12 13078417 13078785 -131203704 - MLT1L LTR MaLR -32 583 191 1043 160 0 11 chr12 13078985 13079166 -131203323 - AluJb SINE Alu 0 312 134 2041 106 3 0 chr12 13079177 13079485 -131203004 - AluSx SINE Alu 0 309 1 218 290 14 13 chr12 13080227 13080311 -131202178 + GA-rich Low_complexity Low_complexity 1 84 0 209 294 15 59 chr12 13080447 13080515 -131201974 - MIR3 SINE MIR -54 154 90 2198 77 3 0 chr12 13080646 13080931 -131201558 - AluY SINE Alu -25 286 1 2270 58 0 0 chr12 13081082 13081360 -131201129 + AluY SINE Alu 1 278 -33 378 0 0 0 chr12 13081360 13081402 -131201087 + (CA)n Simple_repeat Simple_repeat 1 42 0 2142 107 0 7 chr12 13081979 13082279 -131200210 + AluSg SINE Alu 1 298 -12 852 147 0 0 chr12 13083435 13083564 -131198925 + FLAM_C SINE Alu 1 129 -4 762 179 37 79 chr12 13084804 13084890 -131197599 + MER58 DNA MER1_type 1 89 -252 2032 128 0 13 chr12 13084890 13085196 -131197293 - AluSx SINE Alu -10 302 1 762 179 37 79 chr12 13085196 13085299 -131197190 + MER58 DNA MER1_type 89 182 -159 273 203 68 0 chr12 13085301 13085360 -131197129 + MER58 DNA MER1_type 2358 2420 0 23 55 0 18 chr12 13085406 13085435 -131197054 + AT_rich Low_complexity Low_complexity 1 30 -24 1867 150 3 3 chr12 13085435 13085722 -131196767 - AluJb SINE Alu -25 287 1 23 55 0 18 chr12 13085722 13085747 -131196742 + AT_rich Low_complexity Low_complexity 30 54 0 1615 138 0 90 chr12 13086342 13086675 -131195814 + AluJo SINE Alu 1 303 -9 607 317 92 10 chr12 13087401 13087704 -131194785 + L2 LINE L2 2372 2699 -615 2076 98 0 0 chr12 13087715 13087991 -131194498 - AluSg SINE Alu -11 299 24 182 288 186 0 chr12 13088431 13088490 -131193999 - MIR SINE MIR -109 99 30 927 109 0 29 chr12 13088675 13088812 -131193677 + AluSq/x SINE Alu 1 133 -180 2126 36 0 0 chr12 13088816 13089068 -131193421 + AluY SINE Alu 1 252 -59 1660 225 74 50 chr12 13090406 13090909 -131191580 - LTR33 LTR ERVL -6 515 1 4093 78 11 28 chr12 13091011 13091396 -131191093 - MER41A LTR ERV1 0 554 180 2036 52 3 72 chr12 13091396 13091722 -131190767 - AluSp SINE Alu 0 305 1 4093 78 11 28 chr12 13091722 13091899 -131190590 - MER41A LTR ERV1 -374 180 1 393 261 79 20 chr12 13091899 13092101 -131190388 + L1ME LINE L1 5626 5839 -327 2414 78 0 0 chr12 13092258 13092566 -131189923 + AluSc SINE Alu 1 308 -1 2018 104 0 7 chr12 13092579 13092859 -131189630 + AluSx SINE Alu 20 297 -15 2932 177 18 25 chr12 13092951 13093003 -131189486 - MLT2B3 LTR ERVL 0 554 503 570 98 0 0 chr12 13093003 13093085 -131189404 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 2932 177 18 25 chr12 13093085 13093590 -131188899 - MLT2B3 LTR ERVL -51 503 1 390 329 54 14 chr12 13093634 13093856 -131188633 - L2 LINE L2 -157 3156 2926 1585 174 11 7 chr12 13093867 13094148 -131188341 + AluJo SINE Alu 13 294 -18 352 252 22 0 chr12 13094149 13094288 -131188201 + (TA)n Simple_repeat Simple_repeat 1 142 0 225 136 45 0 chr12 13094325 13094391 -131188098 + (TA)n Simple_repeat Simple_repeat 2 70 0 2094 127 0 0 chr12 13094405 13094705 -131187784 - AluSx SINE Alu -11 301 2 1599 184 32 18 chr12 13094718 13095061 -131187428 - L1MB5 LINE L1 -44 6130 5783 3805 113 18 55 chr12 13095083 13095243 -131187246 - L1MB3 LINE L1 -2 6181 6017 314 45 23 0 chr12 13095243 13095287 -131187202 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2315 63 3 0 chr12 13095287 13095573 -131186916 - AluSp SINE Alu -26 287 1 3805 113 18 55 chr12 13095573 13095948 -131186541 - L1MB3 LINE L1 -165 6018 5673 1599 170 3 29 chr12 13095948 13096254 -131186235 - AluJb SINE Alu -14 298 1 3805 113 18 55 chr12 13096254 13096390 -131186099 - L1MB3 LINE L1 -510 5673 5533 1953 113 7 7 chr12 13096423 13096716 -131185773 - AluSx SINE Alu -19 293 1 376 45 79 135 chr12 13096863 13096952 -131185537 + MLT2B1 LTR ERVL 1 84 -431 1642 232 50 38 chr12 13097278 13097701 -131184788 + MLT2B1 LTR ERVL 85 512 -8 1786 171 0 29 chr12 13097705 13098021 -131184468 + AluJb SINE Alu 1 307 -5 3189 150 51 70 chr12 13098185 13098222 -131184267 + L1MB8 LINE L1 5457 5493 -685 2173 105 0 0 chr12 13098222 13098518 -131183971 + AluSg SINE Alu 1 296 -14 3189 150 51 70 chr12 13098518 13098649 -131183840 + L1MB8 LINE L1 5493 5625 -553 2054 115 7 0 chr12 13098649 13098937 -131183552 + AluSx SINE Alu 1 290 -22 416 35 17 0 chr12 13098938 13098996 -131183493 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 3189 150 51 70 chr12 13098996 13099489 -131183000 + L1MB8 LINE L1 5625 6110 -68 2094 118 3 3 chr12 13099489 13099793 -131182696 - AluSp SINE Alu -9 304 1 3189 150 51 70 chr12 13099793 13099814 -131182675 + L1MB8 LINE L1 6110 6130 -48 894 155 0 0 chr12 13099946 13100094 -131182395 + AluSp/q SINE Alu 157 304 -9 675 125 0 2 chr12 13100131 13100394 -131182095 + AluSx SINE Alu 1 308 -4 649 277 193 51 chr12 13100395 13100753 -131181736 + L2 LINE L2 2782 3221 -92 1693 165 21 3 chr12 13100753 13101044 -131181445 - AluJb SINE Alu -8 304 9 649 277 193 51 chr12 13101044 13101152 -131181337 + L2 LINE L2 3221 3312 -1 1966 110 3 23 chr12 13101219 13101519 -131180970 + AluSx SINE Alu 1 294 -18 2156 76 0 14 chr12 13101521 13101810 -131180679 + AluY SINE Alu 16 300 -11 326 277 183 15 chr12 13102018 13102155 -131180334 + L2 LINE L2 3150 3309 -4 320 98 0 0 chr12 13102196 13102237 -131180252 - 5S rRNA rRNA -79 42 2 336 302 62 8 chr12 13102255 13102384 -131180105 - MARNA DNA Mariner -17 569 434 336 24 0 0 chr12 13103108 13103149 -131179340 + (CA)n Simple_repeat Simple_repeat 1 41 0 1621 181 0 22 chr12 13103483 13103798 -131178691 - AluJo SINE Alu -4 308 1 1854 155 3 0 chr12 13104045 13104342 -131178147 - AluJo SINE Alu -14 298 1 1311 265 87 49 chr12 13105217 13105723 -131176766 - MER21B LTR ERV1 -113 750 226 503 172 0 54 chr12 13105784 13105870 -131176619 - MER21B LTR ERV1 -766 97 15 1684 135 7 40 chr12 13105870 13105936 -131176553 - AluJo SINE Alu -26 286 219 1719 156 0 26 chr12 13105936 13106244 -131176245 + AluSx SINE Alu 1 300 -12 1684 135 7 40 chr12 13106244 13106473 -131176016 - AluJo SINE Alu -93 219 1 229 296 161 0 chr12 13106497 13106578 -131175911 + L2 LINE L2 3208 3301 -12 206 264 44 55 chr12 13106688 13106779 -131175710 + MIR3 SINE MIR 96 185 -23 255 31 0 0 chr12 13106807 13106839 -131175650 + (T)n Simple_repeat Simple_repeat 1 32 0 2043 124 0 13 chr12 13108060 13108366 -131174123 + AluJb SINE Alu 1 302 -10 2451 87 37 39 chr12 13108470 13108706 -131173783 + MLT2A1 LTR ERVL 1 237 -207 2115 93 14 3 chr12 13108706 13108997 -131173492 - AluSc SINE Alu -15 294 1 2451 87 37 39 chr12 13108997 13109115 -131173374 + MLT2A1 LTR ERVL 237 354 -90 389 130 0 0 chr12 13109278 13109332 -131173157 - AluJ/FRAM SINE Alu -28 274 221 1157 164 14 19 chr12 13109332 13109545 -131172944 + AluJo SINE Alu 1 212 -100 785 154 95 24 chr12 13110160 13110296 -131172193 + MER20 DNA MER1_type 39 164 -55 1729 149 17 10 chr12 13110296 13110591 -131171898 + AluJo SINE Alu 1 297 -15 1498 155 35 48 chr12 13110591 13110907 -131171582 + AluJb SINE Alu 1 312 0 785 154 95 24 chr12 13110907 13110938 -131171551 + MER20 DNA MER1_type 163 219 0 274 228 173 55 chr12 13111175 13111302 -131171187 - L2 LINE L2 -4 3309 3168 1939 129 0 17 chr12 13111499 13111823 -131170666 - AluSx SINE Alu 0 312 1 517 222 198 18 chr12 13111859 13112026 -131170463 - MIR SINE MIR -64 198 2 183 333 56 0 chr12 13112053 13112125 -131170364 - MIR SINE MIR -184 78 3 1846 161 10 3 chr12 13112379 13112684 -131169805 + AluJo SINE Alu 1 307 -5 2217 81 24 0 chr12 13112767 13113062 -131169427 + AluSx SINE Alu 1 302 -10 1864 125 11 4 chr12 13113199 13113524 -131168965 - AluSx SINE Alu 0 327 1 381 229 73 10 chr12 13113772 13113868 -131168621 - MIR SINE MIR -44 218 117 211 196 304 27 chr12 13113840 13113952 -131168537 - MIR3 SINE MIR -63 145 3 * 1869 131 14 0 chr12 13114192 13114482 -131168007 + AluSx SINE Alu 1 294 -18 492 194 112 0 chr12 13114572 13114670 -131167819 + MER81 DNA DNA 5 113 -1 2267 64 0 0 chr12 13114846 13115151 -131167338 + AluY SINE Alu 1 305 0 493 122 0 0 chr12 13115194 13115284 -131167205 - AluS SINE Alu -1 311 222 223 190 51 101 chr12 13115459 13115538 -131166951 + MIR SINE MIR 124 198 -64 866 92 0 0 chr12 13115621 13115740 -131166749 + AluSg/x SINE Alu 180 298 -14 1681 97 26 102 chr12 13115749 13116091 -131166398 + AluYb8 SINE Alu 1 316 -2 525 271 137 75 chr12 13116449 13116902 -131165587 + MLT1J LTR MaLR 1 481 -30 3440 130 12 2 chr12 13116954 13117461 -131165028 - MER41E LTR ERV1 0 512 1 253 283 25 68 chr12 13117536 13117701 -131164788 - MLT1K LTR MaLR -437 151 14 2017 147 0 0 chr12 13117708 13118015 -131164474 + AluSx SINE Alu 1 307 -5 904 223 79 0 chr12 13118035 13118237 -131164252 - MER20 DNA MER1_type -1 218 1 205 307 72 46 chr12 13118463 13118580 -131163909 + L2 LINE L2 2843 2966 -306 1982 138 44 33 chr12 13118580 13118650 -131163839 - MER47A DNA MER2_type -1957 366 298 2234 107 0 3 chr12 13118650 13118959 -131163530 + AluSc SINE Alu 1 308 -1 1982 138 44 33 chr12 13118959 13119250 -131163239 - MER47A DNA MER2_type -2025 298 1 205 307 72 46 chr12 13119250 13119285 -131163204 + L2 LINE L2 2966 2999 -273 2329 68 14 0 chr12 13119292 13119587 -131162902 - AluSp SINE Alu -14 299 1 265 276 0 0 chr12 13119772 13119830 -131162659 + L2 LINE L2 3215 3272 0 1637 196 7 0 chr12 13120427 13120733 -131161756 + AluJo SINE Alu 1 308 -4 2372 65 0 0 chr12 13120952 13121246 -131161243 - AluY SINE Alu -17 294 1 333 225 138 43 chr12 13121443 13121581 -131160908 + MER5B DNA MER1_type 1 151 -27 2187 104 0 3 chr12 13121849 13122147 -131160342 - AluSq SINE Alu -16 297 1 1946 134 7 3 chr12 13122201 13122491 -131159998 - AluSx SINE Alu -19 293 3 2306 92 0 0 chr12 13122493 13122798 -131159691 - AluSx SINE Alu -7 305 1 2958 153 34 77 chr12 13123160 13123322 -131159167 + LTR39 LTR ERV1 3 170 -613 2470 44 0 0 chr12 13123322 13123615 -131158874 + AluY SINE Alu 5 297 -14 2958 153 34 77 chr12 13123615 13123722 -131158767 + LTR39 LTR ERV1 170 280 -503 2146 83 0 0 chr12 13123722 13124025 -131158464 - AluSc SINE Alu 0 306 4 2958 153 34 77 chr12 13124025 13124365 -131158124 + LTR39 LTR ERV1 280 588 -195 2084 104 3 3 chr12 13124365 13124663 -131157826 - AluY SINE Alu -13 298 1 2958 153 34 77 chr12 13124663 13124690 -131157799 + LTR39 LTR ERV1 588 615 -168 2018 138 0 0 chr12 13124698 13124989 -131157500 + AluSx SINE Alu 1 291 -21 257 0 30 0 chr12 13124989 13125022 -131157467 + (TA)n Simple_repeat Simple_repeat 2 35 0 * 354 23 0 0 chr12 13125021 13125064 -131157425 + (TG)n Simple_repeat Simple_repeat 2 44 0 26 0 0 0 chr12 13125064 13125090 -131157399 + AT_rich Low_complexity Low_complexity 1 26 0 745 114 29 0 chr12 13125090 13125195 -131157294 - FLAM_C SINE Alu -25 118 11 622 220 16 89 chr12 13125201 13125392 -131157097 + LTR39 LTR ERV1 599 775 -8 714 206 37 0 chr12 13125740 13125876 -131156613 + MER3 DNA MER1_type 6 146 -63 198 0 0 0 chr12 13125878 13125900 -131156589 + (T)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr12 13125901 13125922 -131156567 + AT_rich Low_complexity Low_complexity 1 21 0 730 146 8 0 chr12 13127075 13127198 -131155291 + FRAM SINE Alu 52 175 -1 2148 92 0 3 chr12 13127209 13127493 -131154996 + AluSc SINE Alu 1 283 -26 243 310 23 18 chr12 13128335 13128506 -131153983 + G-rich Low_complexity Low_complexity 6 177 0 52 30 0 0 chr12 13128506 13128572 -131153917 + GC_rich Low_complexity Low_complexity 1 66 0 227 94 47 47 chr12 13128572 13128678 -131153811 + (CGGG)n Simple_repeat Simple_repeat 4 109 0 * 262 267 0 0 chr12 13128677 13128722 -131153767 + C-rich Low_complexity Low_complexity 1 45 0 1324 91 0 34 chr12 13128725 13128934 -131153555 + AluSg/x SINE Alu 109 310 0 2505 45 0 13 chr12 13128942 13129255 -131153234 + AluY SINE Alu 1 309 -2 652 286 56 13 chr12 13129258 13129489 -131153000 - MLT1L LTR MaLR -31 584 344 2036 120 3 0 chr12 13129533 13129825 -131152664 - AluSx SINE Alu -19 293 1 2342 79 0 0 chr12 13129934 13130238 -131152251 - AluSx SINE Alu -8 304 1 1024 172 40 0 chr12 13130479 13130653 -131151836 + MER5A DNA MER1_type 3 183 -6 933 224 34 64 chr12 13131268 13131533 -131150956 - MLT1A1 LTR MaLR -12 361 164 2107 116 7 0 chr12 13131533 13131836 -131150653 - AluSc SINE Alu 0 309 5 933 224 34 64 chr12 13131836 13131987 -131150502 - MLT1A1 LTR MaLR -209 164 10 664 105 38 19 chr12 13132019 13132114 -131150375 + U6 snRNA snRNA 1 100 -7 1858 98 54 4 chr12 13132114 13132391 -131150098 - AluSc SINE Alu -18 291 1 1589 175 9 22 chr12 13132402 13132717 -131149772 - AluJo SINE Alu -1 311 1 308 244 70 31 chr12 13133042 13133144 -131149345 + AluY SINE Alu 2 89 -212 23 54 0 0 chr12 13133691 13133728 -131148761 + GC_rich Low_complexity Low_complexity 1 37 0 743 108 20 0 chr12 13133885 13133987 -131148502 + Tigger7 DNA MER2_type 2369 2472 -19 2539 68 0 0 chr12 13134003 13134312 -131148177 - AluY SINE Alu -2 309 1 353 91 0 0 chr12 13134339 13134383 -131148106 - MER69 DNA AcHobo -1 2525 2482 401 212 94 0 chr12 13134418 13134503 -131147986 - MER69 DNA AcHobo -2387 139 47 1345 204 0 22 chr12 13134508 13134821 -131147668 - AluSg SINE Alu 0 310 1 182 266 64 37 chr12 13135350 13135459 -131147030 - MIR SINE MIR -74 188 77 961 239 20 3 chr12 13135677 13135970 -131146519 + AluSq SINE Alu 5 302 -1 2082 139 0 0 chr12 13136367 13136654 -131145835 - AluSx SINE Alu -25 287 1 724 184 21 0 chr12 13136661 13136802 -131145687 - L1MEc LINE L1 -5330 1212 1069 647 196 29 23 chr12 13137292 13137447 -131145042 - L1MC4 LINE L1 -95 7713 7652 927 155 6 18 chr12 13137911 13138079 -131144410 + FRAM SINE Alu 1 40 0 395 210 94 105 chr12 13138959 13139140 -131143349 + MER20B DNA MER1_type 1 179 -604 561 236 118 0 chr12 13139203 13139347 -131143142 - MER58B DNA MER1_type 0 341 181 877 160 0 0 chr12 13139347 13139500 -131142989 - AluSg/x SINE Alu 0 307 155 358 294 70 40 chr12 13139503 13139617 -131142872 - L1MEc LINE L1 -6022 803 679 1775 182 11 32 chr12 13139617 13139990 -131142499 + MLT1A1 LTR MaLR 1 365 0 358 294 70 40 chr12 13139990 13140076 -131142413 - L1MEc LINE L1 -6146 679 597 683 135 0 18 chr12 13140777 13140888 -131141601 + AluSp/q SINE Alu 194 302 -11 692 275 73 8 chr12 13140899 13141255 -131141234 + L1MEc LINE L1 953 1331 -5065 1226 229 46 39 chr12 13141284 13141673 -131140816 + L1MC4 LINE L1 7345 7736 -306 506 161 191 89 chr12 13142109 13142277 -131140212 + MER21B LTR ERV1 677 861 -2 708 171 31 0 chr12 13142284 13142413 -131140076 - L1MD3 LINE L1 -959 7036 6904 230 181 42 42 chr12 13142417 13142489 -131140000 - L1MEc LINE L1 -6233 592 521 228 299 94 8 chr12 13142631 13142748 -131139741 - L2 LINE L2 0 3272 3146 349 329 7 20 chr12 13142953 13143099 -131139390 + CT-rich Low_complexity Low_complexity 1 144 0 328 264 28 44 chr12 13143121 13143303 -131139186 + CT-rich Low_complexity Low_complexity 2 180 0 276 313 15 0 chr12 13143304 13143371 -131139118 + polypyrimidine Low_complexity Low_complexity 1 68 0 284 296 11 28 chr12 13143387 13143566 -131138923 + C-rich Low_complexity Low_complexity 5 180 0 1209 177 11 57 chr12 13143891 13144173 -131138316 - L1MC3 LINE L1 -1384 6401 6133 1556 159 0 90 chr12 13145489 13145822 -131136667 - AluJo SINE Alu -9 303 1 1377 138 0 5 chr12 13146801 13146997 -131135492 - AluSx SINE Alu -117 195 1 1518 87 0 50 chr12 13148105 13148324 -131134165 - AluSq SINE Alu -105 208 1 1862 175 0 3 chr12 13148391 13148688 -131133801 + AluJb SINE Alu 5 300 -12 1061 98 0 0 chr12 13148691 13148824 -131133665 + AluSq/x SINE Alu 1 133 -180 2215 117 0 0 chr12 13148828 13149119 -131133370 + AluSx SINE Alu 1 291 -21 1299 106 14 48 chr12 13149120 13149327 -131133162 - Tigger2a DNA MER2_type -234 200 1 2006 153 0 0 chr12 13149419 13149713 -131132776 + AluSx SINE Alu 1 294 -18 1508 134 4 45 chr12 13149967 13150214 -131132275 - AluJb SINE Alu -75 237 1 315 270 11 11 chr12 13150492 13150581 -131131908 - MIR SINE MIR -107 155 67 1646 185 19 26 chr12 13153168 13153481 -131129008 - AluJo SINE Alu -1 311 1 1564 244 94 42 chr12 13153631 13154447 -131128042 - L1MEc LINE L1 -3444 2771 1939 2224 128 0 0 chr12 13154447 13154753 -131127736 - AluSx SINE Alu -6 306 1 1564 244 94 42 chr12 13154753 13155096 -131127393 - L1MEc LINE L1 -4276 1939 1615 1942 222 119 46 chr12 13155100 13155464 -131127025 - L1MC4 LINE L1 -733 7309 6973 2423 68 0 3 chr12 13155464 13155757 -131126732 - AluY SINE Alu -19 292 1 1942 222 119 46 chr12 13155757 13156022 -131126467 - L1MC4 LINE L1 -1069 6973 6626 1868 139 4 7 chr12 13156022 13156302 -131126187 - AluJb SINE Alu -33 279 1 1942 222 119 46 chr12 13156302 13156343 -131126146 - L1MC4 LINE L1 -1416 6626 6589 733 293 71 3 chr12 13156354 13156733 -131125756 - L1MEc LINE L1 -5039 1357 953 2017 117 0 7 chr12 13156744 13157026 -131125463 - AluSq SINE Alu -11 302 23 952 184 0 6 chr12 13157055 13157218 -131125271 - AluJb SINE Alu -14 298 137 1294 280 96 28 chr12 13157218 13157694 -131124795 - L1MEc LINE L1 -5627 769 238 1817 177 11 32 chr12 13157694 13158067 -131124422 + MLT1A1 LTR MaLR 1 365 0 1294 280 96 28 chr12 13158067 13158225 -131124264 - L1MEc LINE L1 -6158 238 92 418 322 41 62 chr12 13158367 13158659 -131123830 - L2 LINE L2 0 3272 2987 2673 45 0 13 chr12 13158690 13159003 -131123486 - AluY SINE Alu -2 309 1 1595 166 40 25 chr12 13159063 13159364 -131123125 + AluJb SINE Alu 1 305 0 2059 122 17 0 chr12 13159388 13159682 -131122807 + AluSx SINE Alu 1 299 -13 2121 126 16 3 chr12 13159715 13160024 -131122465 - AluSq SINE Alu 0 313 1 1630 188 18 0 chr12 13160053 13160330 -131122159 + AluJo SINE Alu 1 282 -30 2103 123 26 0 chr12 13160512 13160814 -131121675 - AluSg SINE Alu 0 310 1 2553 61 0 0 chr12 13160947 13161244 -131121245 - AluY SINE Alu -14 297 1 2172 123 3 7 chr12 13161880 13162190 -131120299 - AluSx SINE Alu -3 309 1 250 324 0 0 chr12 13162202 13162273 -131120216 + L2 LINE L2 3184 3254 -18 2297 93 0 0 chr12 13162801 13163091 -131119398 + AluSx SINE Alu 1 290 -22 1148 221 58 7 chr12 13163231 13163508 -131118981 + L1MD3 LINE L1 7444 7874 -58 1558 157 4 20 chr12 13163508 13163763 -131118726 - AluJb SINE Alu -57 255 5 1148 221 58 7 chr12 13163763 13163797 -131118692 + L1MD3 LINE L1 7874 7905 -27 2018 132 20 7 chr12 13163818 13164121 -131118368 - AluSx SINE Alu 0 312 6 3700 136 116 34 chr12 13164364 13165070 -131117419 - Tigger1 DNA MER2_type -1653 765 2 1451 182 194 30 chr12 13165143 13165723 -131116766 - L1ME1 LINE L1 -154 6012 5528 1609 95 54 0 chr12 13165723 13165944 -131116545 - AluSg/x SINE Alu -12 298 66 1451 182 194 30 chr12 13165944 13166266 -131116223 - L1ME1 LINE L1 -638 5528 4795 582 267 6 0 chr12 13166269 13166434 -131116055 - L1M4 LINE L1 -1014 5943 5778 1876 259 75 36 chr12 13166435 13166792 -131115697 - L1M4c LINE L1 -3441 3516 3175 2522 161 29 2 chr12 13166792 13167207 -131115282 - MSTB LTR MaLR 0 426 1 1876 259 75 36 chr12 13167207 13167246 -131115243 - L1M4c LINE L1 -3782 3175 3139 2141 115 17 10 chr12 13167246 13167542 -131114947 - AluSx SINE Alu -12 300 3 1876 259 75 36 chr12 13167542 13168834 -131113655 - L1M4c LINE L1 -3818 3139 1605 870 146 8 0 chr12 13168863 13168993 -131113496 - FLAM_C SINE Alu -12 131 1 958 241 86 31 chr12 13169011 13169397 -131113092 - L1M4c LINE L1 -5244 1615 1209 474 187 149 15 chr12 13169423 13169557 -131112932 - MLT1F1 LTR MaLR -52 515 364 191 177 51 101 chr12 13169883 13169962 -131112527 + L2 LINE L2 2984 3058 -255 252 254 40 98 chr12 13170158 13170223 -131112266 - L1M4c LINE L1 -6621 238 171 2211 125 0 0 chr12 13170223 13170519 -131111970 - AluSg SINE Alu -14 296 1 252 254 40 98 chr12 13170519 13170677 -131111812 - L1M4c LINE L1 -6688 171 28 2140 135 0 0 chr12 13170716 13171012 -131111477 - AluSx SINE Alu -16 296 1 304 272 68 30 chr12 13171041 13171165 -131111324 - L1MEc LINE L1 -4054 2342 2224 1803 130 41 54 chr12 13171165 13171481 -131111008 - AluSx SINE Alu 0 312 1 304 272 68 30 chr12 13171481 13171591 -131110898 - L1MEc LINE L1 -4172 2224 2099 1264 222 4 19 chr12 13171621 13171878 -131110611 - AluJo SINE Alu -58 254 2 542 193 117 0 chr12 13171879 13172031 -131110458 - L1ME1 LINE L1 -311 5855 5690 700 277 131 9 chr12 13172249 13172664 -131109825 - L3 LINE CR1 -444 1133 617 2360 99 0 0 chr12 13173847 13174149 -131108340 - AluSq SINE Alu -11 302 1 2076 137 0 0 chr12 13174363 13174655 -131107834 - AluSx SINE Alu -20 292 1 459 205 116 0 chr12 13174875 13174987 -131107502 - L2 LINE L2 -1 3312 3188 1403 179 47 51 chr12 13175216 13175512 -131106977 + AluJo SINE Alu 1 295 -17 482 153 0 0 chr12 13175545 13175617 -131106872 - AluS SINE Alu -239 73 2 452 244 24 71 chr12 13176001 13176106 -131106383 + L3 LINE CR1 657 753 -824 2228 103 0 7 chr12 13176106 13176398 -131106091 - AluSx SINE Alu -21 291 2 452 244 24 71 chr12 13176398 13176460 -131106029 + L3 LINE CR1 753 816 -761 2023 129 0 47 chr12 13176461 13176779 -131105710 + AluSx SINE Alu 1 303 -9 521 278 75 0 chr12 13176908 13177081 -131105408 - MIR SINE MIR -75 187 2 209 294 78 29 chr12 13177091 13177193 -131105296 - L3 LINE CR1 -56 1521 1415 * 469 321 25 21 chr12 13177190 13177430 -131105059 + MIR SINE MIR 8 248 -14 518 285 81 62 chr12 13177450 13177659 -131104830 - L3 LINE CR1 -192 1385 1164 1809 159 3 24 chr12 13177659 13177954 -131104535 + AluJb SINE Alu 1 289 -23 518 285 81 62 chr12 13177954 13178113 -131104376 - L3 LINE CR1 -413 1164 1010 325 284 0 11 chr12 13178135 13178230 -131104259 - L3 LINE CR1 -681 896 803 2255 116 0 0 chr12 13178231 13178532 -131103957 - AluSx SINE Alu -11 301 1 2278 124 0 0 chr12 13178755 13179062 -131103427 + AluSx SINE Alu 1 307 -5 481 229 105 0 chr12 13179269 13179374 -131103115 - FLAM_A SINE Alu -17 116 1 329 310 56 21 chr12 13179507 13179649 -131102840 - MIR SINE MIR -24 238 92 1945 117 3 60 chr12 13179976 13180297 -131102192 - AluSx SINE Alu 0 305 2 236 304 123 12 chr12 13180464 13180635 -131101854 - L2 LINE L2 -656 2658 2469 2129 111 27 0 chr12 13180698 13180996 -131101493 - AluSx SINE Alu -4 308 3 1176 271 53 27 chr12 13185586 13186037 -131096452 - L1ME3A LINE L1 -223 5947 5485 868 202 209 39 chr12 13186230 13186487 -131096002 - L1ME4a LINE L1 0 6121 5909 2486 52 0 26 chr12 13186487 13186795 -131095694 + AluY SINE Alu 1 300 -11 868 202 209 39 chr12 13186795 13186953 -131095536 - L1ME4a LINE L1 -212 5909 5635 189 355 53 59 chr12 13187257 13187426 -131095063 - L3 LINE CR1 -75 1502 1335 693 261 85 0 chr12 13187792 13187980 -131094509 - MIR SINE MIR -50 212 9 1188 153 171 78 chr12 13188982 13189316 -131093173 - MLT1A1 LTR MaLR 0 365 1 2106 108 16 29 chr12 13189395 13189711 -131092778 - AluSq SINE Alu -1 312 1 209 265 78 29 chr12 13190249 13190351 -131092138 + MIR SINE MIR 156 262 0 699 289 70 33 chr12 13190554 13190883 -131091606 - LTR67 LTR ERVL -42 515 175 2879 168 33 33 chr12 13192189 13192410 -131090079 - L1MB4 LINE L1 -12 6168 5948 2176 110 3 13 chr12 13192410 13192719 -131089770 - AluJb SINE Alu -6 306 1 2879 168 33 33 chr12 13192719 13193073 -131089416 - L1MB4 LINE L1 -231 5949 5593 6190 180 24 61 chr12 13193096 13193934 -131088555 - L1MB3 LINE L1 -10 6409 5541 11983 34 5 0 chr12 13193934 13196065 -131086424 - L1PA4 LINE L1 -3 6152 4023 6190 180 24 61 chr12 13196065 13197610 -131084879 - L1MB3 LINE L1 -878 5541 4120 5940 68 37 37 chr12 13197616 13197819 -131084670 - SVA Other Other 0 1386 433 5940 72 42 46 chr12 13197819 13198920 -131083569 - SVA Other Other -590 1385 433 1405 96 9 60 chr12 13198934 13199269 -131083220 - SVA Other Other -520 866 549 5545 39 1 160 chr12 13199286 13200257 -131082232 - SVA Other Other -520 866 50 216 0 0 0 chr12 13200267 13200291 -131082198 + (AGGGGG)n Simple_repeat Simple_repeat 6 29 0 12642 175 31 63 chr12 13200302 13201143 -131081346 - L1MB3 LINE L1 -2260 4122 3256 1631 164 9 59 chr12 13201143 13201467 -131081022 - AluJo SINE Alu 0 312 5 12642 175 31 63 chr12 13201467 13201490 -131080999 - L1MB3 LINE L1 -3126 3256 3234 2192 109 0 29 chr12 13201490 13201801 -131080688 - AluSx SINE Alu -10 302 1 12642 175 31 63 chr12 13201801 13202377 -131080112 - L1MB3 LINE L1 -3148 3234 2641 1596 167 52 0 chr12 13202377 13202646 -131079843 - AluSx SINE Alu -23 289 7 12642 175 31 63 chr12 13202646 13202698 -131079791 - L1MB3 LINE L1 -3741 2641 2589 2059 97 3 54 chr12 13202698 13203048 -131079441 - AluY SINE Alu 0 335 1 12642 175 31 63 chr12 13203048 13203123 -131079366 - L1MB3 LINE L1 -3793 2589 2513 1717 171 4 7 chr12 13203123 13203398 -131079091 + AluJo SINE Alu 10 283 -29 12642 175 31 63 chr12 13203398 13203751 -131078738 - L1MB3 LINE L1 -3869 2513 2150 19307 59 5 4 chr12 13203751 13206897 -131075592 - L1PA6 LINE L1 0 6154 3009 12642 175 31 63 chr12 13206897 13207009 -131075480 - L1MB3 LINE L1 -4232 2150 2036 322 113 48 0 chr12 13207009 13207042 -131075447 - MER41A LTR ERV1 -88 466 436 2057 126 44 0 chr12 13207042 13207336 -131075153 + AluSx SINE Alu 1 307 -5 322 113 48 0 chr12 13207336 13207364 -131075125 - MER41A LTR ERV1 -118 436 402 12642 175 31 63 chr12 13207364 13207695 -131074794 - L1MB3 LINE L1 -4346 2036 1696 2360 69 0 20 chr12 13207695 13207998 -131074491 - AluY SINE Alu 0 311 15 12642 175 31 63 chr12 13207998 13208401 -131074088 - L1MB3 LINE L1 -4686 1696 1282 2043 144 0 3 chr12 13208401 13208700 -131073789 - AluSx SINE Alu -14 298 1 12642 175 31 63 chr12 13208700 13210120 -131072369 - L1MB3 LINE L1 -5100 1282 2 1527 161 62 19 chr12 13210108 13210432 -131072057 - L1M3 LINE L1 -578 5602 5265 * 318 323 164 23 chr12 13210642 13210862 -131071627 - MIR SINE MIR -6 256 6 484 227 0 31 chr12 13210962 13211059 -131071430 - FLAM_A SINE Alu -27 115 22 440 278 26 0 chr12 13211408 13211523 -131070966 - MIR SINE MIR -89 173 56 2429 80 0 3 chr12 13211878 13212190 -131070299 - AluY SINE Alu 0 311 1 1827 198 14 32 chr12 13212331 13212700 -131069789 - MLT1A1 LTR MaLR 0 365 4 244 232 160 33 chr12 13213406 13213587 -131068902 + L1MC4 LINE L1 7837 8040 -2 233 361 72 0 chr12 13214744 13214827 -131067662 - L2 LINE L2 -27 3245 3157 2525 60 0 3 chr12 13214862 13215161 -131067328 - AluY SINE Alu -13 298 1 24 0 0 0 chr12 13215327 13215351 -131067138 + AT_rich Low_complexity Low_complexity 1 24 0 1524 266 65 41 chr12 13215437 13216111 -131066378 - L1MC4a LINE L1 -1805 6003 5310 2412 74 3 0 chr12 13216111 13216410 -131066079 - AluSc SINE Alu -9 300 1 1524 266 65 41 chr12 13216410 13216438 -131066051 - L1MC4a LINE L1 -2498 5310 5284 1749 127 0 0 chr12 13216467 13216704 -131065785 - AluSx SINE Alu -75 237 1 3581 169 28 53 chr12 13217148 13217762 -131064727 + L1MD2 LINE L1 5555 6183 -176 1820 141 50 14 chr12 13217762 13218059 -131064430 + AluSx SINE Alu 1 308 -4 751 206 0 0 chr12 13218069 13218195 -131064294 + FLAM_A SINE Alu 2 127 -6 3581 169 28 53 chr12 13218195 13218321 -131064168 + L1MD2 LINE L1 6192 6287 -72 1719 130 24 0 chr12 13218762 13219015 -131063474 + AluJo SINE Alu 47 305 -7 2062 166 89 11 chr12 13219110 13219581 -131062908 + Charlie1b DNA MER1_type 16 523 0 27 0 0 0 chr12 13219902 13219929 -131062560 + AT_rich Low_complexity Low_complexity 1 27 0 688 253 39 11 chr12 13220013 13220195 -131062294 + MIR SINE MIR 70 256 -6 530 253 86 19 chr12 13220615 13220777 -131061712 + MIR SINE MIR 2 174 -88 2991 93 0 0 chr12 13221783 13222147 -131060342 + THE1B LTR MaLR 1 364 0 255 253 0 63 chr12 13222286 13222381 -131060108 - MER103 DNA DNA -47 119 31 1343 193 133 15 chr12 13222475 13222739 -131059750 - AluJo SINE Alu -7 295 1 1722 120 0 0 chr12 13222864 13223098 -131059391 + AluSg/x SINE Alu 74 307 -3 199 354 0 0 chr12 13223112 13223194 -131059295 - MIR3 SINE MIR -49 159 78 608 275 34 14 chr12 13223364 13223571 -131058918 - L1MC5 LINE L1 -66 7895 7685 * 903 196 14 27 chr12 13223556 13223776 -131058713 - L1MD3 LINE L1 -1 7994 7778 467 236 33 121 chr12 13223841 13224023 -131058466 + MER5B DNA MER1_type 13 178 0 1694 136 45 21 chr12 13224059 13224346 -131058143 + AluJb SINE Alu 4 297 -15 519 226 30 38 chr12 13225481 13225614 -131056875 - MIR3 SINE MIR -7 201 70 223 342 77 0 chr12 13225622 13225777 -131056712 - L2 LINE L2 -1574 1740 1574 854 297 21 0 chr12 13226007 13226243 -131056246 + MIR SINE MIR 1 241 -21 25 0 0 0 chr12 13226422 13226447 -131056042 + AT_rich Low_complexity Low_complexity 1 25 0 373 179 90 0 chr12 13228784 13228851 -131053638 + L2 LINE L2 3236 3308 -5 952 235 122 19 chr12 13228933 13229305 -131053184 - MLT1J2 LTR MaLR 0 450 47 1170 148 66 0 chr12 13229550 13229746 -131052743 + MER30 DNA MER1_type 1 209 -21 1582 169 14 35 chr12 13229759 13230049 -131052440 - AluJo SINE Alu -25 287 4 275 248 28 28 chr12 13230103 13230212 -131052277 + L1ME4a LINE L1 5997 6105 -16 225 0 0 0 chr12 13230241 13230266 -131052223 + (T)n Simple_repeat Simple_repeat 1 25 0 277 254 0 0 chr12 13230268 13230327 -131052162 - MER5A DNA MER1_type -55 134 76 1674 168 3 44 chr12 13230337 13230653 -131051836 - AluJo SINE Alu -8 304 2 240 35 0 0 chr12 13230653 13230682 -131051807 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 607 269 69 33 chr12 13230799 13231074 -131051415 - L2 LINE L2 -19 3294 3010 2224 112 3 3 chr12 13232914 13233226 -131049263 - AluSq SINE Alu -1 312 1 2210 103 13 0 chr12 13233236 13233538 -131048951 - AluSg SINE Alu -4 306 1 367 216 52 17 chr12 13234872 13234988 -131047501 + MIR SINE MIR 33 152 -56 22 0 0 0 chr12 13235212 13235234 -131047255 + AT_rich Low_complexity Low_complexity 1 22 0 554 314 53 10 chr12 13235411 13235618 -131046871 + MIR SINE MIR 34 249 -13 2314 49 0 111 chr12 13236313 13236657 -131045832 + AluSc SINE Alu 1 306 -3 21 0 0 0 chr12 13236803 13236824 -131045665 + AT_rich Low_complexity Low_complexity 1 21 0 535 192 68 10 chr12 13237786 13237950 -131044539 + L1MA9 LINE L1 6130 6299 -1 258 290 130 22 chr12 13238216 13238354 -131044135 + MER117 DNA MER1_type 10 162 -35 4474 174 20 0 chr12 13238394 13239203 -131043286 - L1MB7 LINE L1 -19 6165 5341 381 229 114 69 chr12 13239482 13239657 -131042832 - MIR SINE MIR -43 219 37 2193 118 3 0 chr12 13240209 13240506 -131041983 + AluSx SINE Alu 1 298 -14 1785 155 14 3 chr12 13240863 13241153 -131041336 + AluJo SINE Alu 1 293 -19 579 284 14 30 chr12 13241823 13242039 -131040450 - MIR SINE MIR -12 250 40 2166 36 0 4 chr12 13242099 13242352 -131040137 + AluY SINE Alu 1 252 -59 261 0 0 0 chr12 13242831 13242860 -131039629 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 773 131 16 0 chr12 13243280 13243402 -131039087 - AluSg/x SINE Alu 0 312 189 2271 103 0 10 chr12 13243402 13243702 -131038787 + AluSg SINE Alu 1 297 -13 1469 87 5 10 chr12 13243713 13243908 -131038581 - AluSp SINE Alu -119 194 1 4781 225 59 26 chr12 13243908 13244025 -131038464 - L1MB7 LINE L1 -957 5189 5077 2087 128 7 7 chr12 13244025 13244323 -131038166 - AluSq SINE Alu -15 298 1 4781 225 59 26 chr12 13244323 13245607 -131036882 - L1MB7 LINE L1 -1069 5077 3741 1564 220 0 13 chr12 13245872 13246185 -131036304 - AluJb SINE Alu -3 309 1 463 241 143 92 chr12 13246197 13246567 -131035922 - MLT1J LTR MaLR -2 509 121 * 934 169 97 48 chr12 13246551 13246799 -131035690 - MER110A LTR ERV1 -208 260 1 215 197 0 98 chr12 13246807 13246868 -131035621 + L2 LINE L2 3207 3261 -11 426 283 14 21 chr12 13246877 13247022 -131035467 - MIR SINE MIR -2 260 117 438 243 108 0 chr12 13247036 13247147 -131035342 - L2 LINE L2 0 3313 3191 219 347 53 21 chr12 13247147 13247242 -131035247 - MIR SINE MIR -159 103 6 2048 114 34 3 chr12 13247364 13247661 -131034828 - AluSx SINE Alu -6 306 1 414 262 78 0 chr12 13248031 13248172 -131034317 + MER113 DNA MER1_type? 345 496 -25 1083 173 5 0 chr12 13249685 13249870 -131032619 - AluJb SINE Alu -12 300 115 28 29 0 0 chr12 13250765 13250800 -131031689 + AT_rich Low_complexity Low_complexity 1 35 0 948 175 0 0 chr12 13251657 13251811 -131030678 - FRAM SINE Alu -27 149 1 21 0 0 0 chr12 13251811 13251832 -131030657 + AT_rich Low_complexity Low_complexity 1 21 0 1368 216 163 41 chr12 13252382 13252971 -131029518 + MLT2F LTR ERVL 1 661 -2 377 263 51 17 chr12 13253167 13253285 -131029204 + MIR3 SINE MIR 87 208 0 2183 98 0 11 chr12 13253784 13254069 -131028420 + AluSq SINE Alu 1 282 -31 1713 143 0 60 chr12 13254675 13254796 -131027693 + Charlie3 DNA MER1_type 1 128 -2584 2303 81 3 0 chr12 13254796 13255081 -131027408 - AluSg SINE Alu -24 286 1 1713 143 0 60 chr12 13255081 13255362 -131027127 + Charlie3 DNA MER1_type 128 2712 0 4000 123 121 102 chr12 13256335 13257691 -131024798 - pTR5 LTR ERV1 0 2438 734 2139 117 21 0 chr12 13257694 13257985 -131024504 - AluSq SINE Alu -16 297 1 1865 130 20 37 chr12 13263050 13263349 -131019140 - AluJo SINE Alu -18 294 1 565 241 116 19 chr12 13263606 13263813 -131018676 - MIR SINE MIR -29 233 7 2047 111 21 0 chr12 13265452 13265732 -131016757 - AluSx SINE Alu -26 286 1 245 234 226 24 chr12 13267003 13267127 -131015362 + L1ME4a LINE L1 5967 6115 -6 1713 140 15 11 chr12 13267435 13267700 -131014789 - AluJo SINE Alu -20 292 27 220 216 0 0 chr12 13268072 13268123 -131014366 + T-rich Low_complexity Low_complexity 1 51 0 627 282 45 10 chr12 13268123 13268325 -131014164 - MIR SINE MIR -53 209 1 202 193 35 0 chr12 13268664 13268721 -131013768 + A-rich Low_complexity Low_complexity 1 59 0 2114 107 40 7 chr12 13269326 13269625 -131012864 - AluSx SINE Alu -3 309 1 2379 82 0 7 chr12 13269724 13270015 -131012474 - AluSx SINE Alu -13 299 11 1282 181 127 8 chr12 13270232 13270492 -131011997 - AluSg SINE Alu -19 291 1 2429 92 0 0 chr12 13270500 13270806 -131011683 - AluY SINE Alu -5 306 1 333 0 0 0 chr12 13271195 13271232 -131011257 + (TG)n Simple_repeat Simple_repeat 1 37 0 276 325 98 49 chr12 13272298 13272646 -131009843 + L2 LINE L2 2155 2519 -795 2229 105 3 7 chr12 13273510 13273816 -131008673 + AluSp SINE Alu 1 305 -8 466 214 9 0 chr12 13274598 13274710 -131007779 - MIR SINE MIR 0 262 150 1248 170 0 19 chr12 13274710 13274922 -131007567 - AluJo SINE Alu -95 217 10 26 0 0 0 chr12 13275867 13275893 -131006596 + AT_rich Low_complexity Low_complexity 1 26 0 763 194 0 15 chr12 13275929 13276063 -131006426 - FLAM_A SINE Alu -1 132 1 21 36 0 0 chr12 13276182 13276210 -131006279 + AT_rich Low_complexity Low_complexity 1 28 0 5210 230 143 22 chr12 13276407 13278754 -131003735 + L2 LINE L2 705 3313 0 396 274 32 24 chr12 13279706 13279830 -131002659 + MIR SINE MIR 60 184 -78 325 104 0 0 chr12 13279907 13279955 -131002534 + L1MB8 LINE L1 6131 6178 0 237 342 171 5 chr12 13280633 13280832 -131001657 - MIR SINE MIR -29 233 2 1592 153 41 25 chr12 13281688 13282002 -131000487 + MER33 DNA MER1_type 6 324 0 2343 78 0 0 chr12 13282404 13282717 -130999772 + AluSc SINE Alu 1 313 0 261 333 8 25 chr12 13282942 13283062 -130999427 + MIR3 SINE MIR 76 193 -15 1625 177 0 11 chr12 13283093 13283421 -130999068 - AluJb SINE Alu 0 336 12 23 0 0 0 chr12 13285409 13285432 -130997057 + AT_rich Low_complexity Low_complexity 1 23 0 2449 72 10 0 chr12 13286424 13286729 -130995760 + AluSq SINE Alu 1 308 -5 2010 100 4 0 chr12 13287265 13287524 -130994965 - AluSp SINE Alu -12 301 42 712 252 88 17 chr12 13287698 13287936 -130994553 + MIR SINE MIR 5 259 -3 2135 73 4 0 chr12 13287938 13288198 -130994291 - AluSx SINE Alu -11 301 41 346 269 45 32 chr12 13288402 13288558 -130993931 - MER103 DNA DNA -8 158 1 1842 142 24 7 chr12 13288980 13289275 -130993214 - AluJb SINE Alu -12 300 1 1176 141 0 101 chr12 13289370 13289597 -130992892 + AluJb SINE Alu 86 289 -23 515 286 103 17 chr12 13289734 13289909 -130992580 - MIR SINE MIR -13 249 60 2336 86 3 0 chr12 13292318 13292622 -130989867 - AluSp SINE Alu -8 305 1 212 306 32 0 chr12 13293925 13293987 -130988502 + L2 LINE L2 2875 2938 -334 229 217 66 19 chr12 13294073 13294179 -130988310 + MER112 DNA MER1_type 11 121 -139 357 323 57 16 chr12 13294338 13294462 -130988027 + L2 LINE L2 3136 3264 -8 588 327 70 49 chr12 13295292 13295934 -130986555 - L2 LINE L2 -9 3263 2596 227 323 88 93 chr12 13296108 13296551 -130985938 + L2 LINE L2 2831 3271 -1 2626 141 83 4 chr12 13296913 13297404 -130985085 - L1MA9 LINE L1 0 6312 5783 221 304 54 22 chr12 13298234 13298326 -130984163 + MIR3 SINE MIR 88 182 -26 237 290 125 62 chr12 13298817 13298993 -130983496 - MIR SINE MIR -56 206 20 1654 169 45 10 chr12 13299381 13299671 -130982818 - AluJo SINE Alu -11 301 2 22 56 0 0 chr12 13299830 13299866 -130982623 + AT_rich Low_complexity Low_complexity 1 36 0 2333 95 3 3 chr12 13300044 13300340 -130982149 - AluSp SINE Alu -17 296 1 2230 122 0 0 chr12 13300491 13300786 -130981703 - AluSx SINE Alu -15 297 3 965 166 25 0 chr12 13300854 13301017 -130981472 - FRAM SINE Alu -10 166 1 2202 118 7 0 chr12 13302945 13303249 -130979240 + AluSx SINE Alu 1 306 -6 25 31 0 0 chr12 13303996 13304028 -130978461 + AT_rich Low_complexity Low_complexity 1 32 0 2192 122 0 0 chr12 13307280 13307576 -130974913 - AluJb SINE Alu -16 296 1 459 264 28 21 chr12 13307846 13307990 -130974499 + MIR SINE MIR 64 208 -54 246 145 29 58 chr12 13309533 13309602 -130972887 + L1MA10 LINE L1 6265 6331 -3 21 36 0 0 chr12 13309632 13309660 -130972829 + AT_rich Low_complexity Low_complexity 1 28 0 327 260 101 66 chr12 13309664 13309891 -130972598 - L1MC4a LINE L1 -1725 6083 5849 2334 72 21 0 chr12 13309984 13310275 -130972214 - AluSp SINE Alu -15 298 2 900 158 8 0 chr12 13310303 13310436 -130972053 + AluJo SINE Alu 1 134 -178 279 0 0 0 chr12 13310444 13310475 -130972014 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr12 13310947 13310969 -130971520 + AT_rich Low_complexity Low_complexity 1 22 0 666 58 0 11 chr12 13312228 13312315 -130970174 + L1PA7 LINE L1 6057 6142 -12 299 253 133 0 chr12 13313304 13313379 -130969110 - L2 LINE L2 0 3313 3229 506 284 98 30 chr12 13313427 13313691 -130968798 - L2 LINE L2 -74 3239 2958 1960 159 7 3 chr12 13313821 13314122 -130968367 - AluJo SINE Alu -10 302 1 4735 160 48 12 chr12 13314126 13315271 -130967218 - L1MA8 LINE L1 -4 6287 5102 285 125 0 0 chr12 13316133 13316173 -130966316 + AluSx SINE Alu 1 40 -260 1805 125 4 0 chr12 13316338 13316586 -130965903 + AluSx SINE Alu 38 286 -26 2741 16 0 0 chr12 13316589 13316896 -130965593 + AluYb8 SINE Alu 1 307 -11 226 224 32 83 chr12 13316941 13317097 -130965392 + L1ME LINE L1 5724 5871 -250 2302 102 0 3 chr12 13317380 13317683 -130964806 + AluSx SINE Alu 3 304 -8 293 339 8 31 chr12 13318435 13318565 -130963924 + MIR SINE MIR 19 145 -63 1781 65 9 0 chr12 13368840 13369056 -130913433 - AluSg/x SINE Alu -9 301 84 291 53 0 0 chr12 13369057 13369095 -130913394 + AluS SINE Alu 62 99 -203 596 233 59 68 chr12 13369174 13369373 -130913116 + L1ME LINE L1 5448 5646 -475 2226 83 0 48 chr12 13369373 13369686 -130912803 + AluSg SINE Alu 1 298 -12 596 233 59 68 chr12 13369686 13369722 -130912767 + L1ME LINE L1 5646 5681 -440 1776 135 3 57 chr12 13369832 13369977 -130912512 + AluJo SINE Alu 5 127 -185 2087 109 29 26 chr12 13369977 13370288 -130912201 + AluSp SINE Alu 1 312 -1 1776 135 3 57 chr12 13370288 13370439 -130912050 + AluJo SINE Alu 127 285 -27 469 329 132 29 chr12 13370628 13370999 -130911490 - L2 LINE L2 -786 2528 2197 2297 100 0 0 chr12 13370999 13371290 -130911199 + AluSq SINE Alu 1 291 -22 469 329 132 29 chr12 13371290 13371651 -130910838 - L2 LINE L2 -1117 2197 1720 21 36 0 0 chr12 13371953 13371981 -130910508 + AT_rich Low_complexity Low_complexity 1 28 0 2057 128 20 0 chr12 13372097 13372394 -130910095 - AluJb SINE Alu -9 303 1 1326 206 10 45 chr12 13372534 13372853 -130909636 + AluJo SINE Alu 1 309 0 2335 113 3 0 chr12 13372922 13373233 -130909256 - AluSx SINE Alu 0 312 1 1726 151 21 28 chr12 13373333 13373624 -130908865 - AluJo SINE Alu -23 289 1 2219 126 3 0 chr12 13374016 13374317 -130908172 + AluSg SINE Alu 1 302 -8 486 248 68 0 chr12 13374457 13374590 -130907899 - MIR SINE MIR -74 188 47 430 259 167 12 chr12 13374814 13374976 -130907513 + MIR SINE MIR 55 241 -21 236 100 25 0 chr12 13375310 13375350 -130907139 - L1ME4a LINE L1 -11 6110 6070 461 116 4 24 chr12 13375352 13375595 -130906894 + AluSx SINE Alu 1 310 0 764 133 19 38 chr12 13375717 13375875 -130906614 - L1MA9 LINE L1 0 6312 6158 26 64 0 0 chr12 13376154 13376201 -130906288 + AT_rich Low_complexity Low_complexity 1 47 0 539 186 97 0 chr12 13376561 13376685 -130905804 + MIR SINE MIR 83 218 -44 494 269 54 21 chr12 13377095 13377281 -130905208 + MIR SINE MIR 1 192 -70 2059 127 0 13 chr12 13377295 13377616 -130904873 + AluSq SINE Alu 1 313 0 342 0 0 0 chr12 13377623 13377661 -130904828 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1413 164 56 19 chr12 13377662 13377931 -130904558 - AluJb SINE Alu -33 279 1 2288 181 31 43 chr12 13378198 13378706 -130903783 - MLT1D LTR MaLR 0 505 4 1548 83 5 0 chr12 13378956 13379148 -130903341 + AluSg SINE Alu 1 193 -117 1671 184 24 10 chr12 13379243 13379416 -130903073 - AluJb SINE Alu -15 297 117 477 0 0 0 chr12 13379416 13379469 -130903020 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1671 184 24 10 chr12 13379469 13379588 -130902901 - AluJb SINE Alu -195 117 1 666 101 92 18 chr12 13379683 13379792 -130902697 + FRAM SINE Alu 21 137 -39 2363 92 3 0 chr12 13380136 13380430 -130902059 - AluSp SINE Alu -16 297 3 605 287 79 9 chr12 13380620 13380836 -130901653 - MIR SINE MIR -8 254 24 262 258 30 0 chr12 13380866 13380932 -130901557 + MIR3 SINE MIR 118 185 -23 1567 161 20 40 chr12 13382547 13382846 -130899643 + AluJo SINE Alu 1 293 -19 788 230 30 45 chr12 13382899 13383164 -130899325 - MIR SINE MIR -1 261 1 342 274 89 7 chr12 13383196 13383331 -130899158 - MIR SINE MIR -91 171 26 183 80 0 0 chr12 13383773 13383798 -130898691 + (A)n Simple_repeat Simple_repeat 1 25 0 374 121 15 0 chr12 13384356 13384422 -130898067 + L1MB4 LINE L1 6108 6174 -6 278 327 18 18 chr12 13385067 13385180 -130897309 - MIR SINE MIR -59 149 37 274 307 23 0 chr12 13385889 13385977 -130896512 - MIR3 SINE MIR 0 208 119 449 322 84 23 chr12 13385992 13386253 -130896236 - L3 LINE CR1 -563 1014 738 219 88 0 0 chr12 13386321 13386355 -130896134 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1573 134 69 33 chr12 13386358 13386634 -130895855 - AluJb SINE Alu -26 286 1 2056 137 0 13 chr12 13387090 13387396 -130895093 - AluSx SINE Alu -10 302 1 204 300 0 0 chr12 13387600 13387660 -130894829 + L2 LINE L2 2440 2499 -815 459 291 137 17 chr12 13387663 13387897 -130894592 - MIR SINE MIR 0 262 1 243 277 15 0 chr12 13387900 13387965 -130894524 - LTR16B LTR ERVL -110 354 289 277 312 0 0 chr12 13388013 13388170 -130894319 + (TTGG)n Simple_repeat Simple_repeat 1 157 0 266 316 0 0 chr12 13388193 13388370 -130894119 + (TTGG)n Simple_repeat Simple_repeat 1 177 0 300 311 0 0 chr12 13388393 13388570 -130893919 + (TTGG)n Simple_repeat Simple_repeat 1 177 0 252 307 6 0 chr12 13389332 13389569 -130892920 + (TTGG)n Simple_repeat Simple_repeat 1 238 0 355 251 28 22 chr12 13389578 13389757 -130892732 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 936 282 37 0 chr12 13389763 13390004 -130892485 - LTR16B LTR ERVL -167 297 48 230 391 40 6 chr12 13390081 13390255 -130892234 + L2 LINE L2 2564 2743 -571 2052 136 0 7 chr12 13390263 13390396 -130892093 + AluSx SINE Alu 2 134 -178 2523 68 0 0 chr12 13390396 13390692 -130891797 + AluY SINE Alu 1 296 -15 2052 136 0 7 chr12 13390692 13390853 -130891636 + AluSx SINE Alu 134 294 -18 215 227 0 0 chr12 13391364 13391408 -130891081 - L3 LINE CR1 -34 1543 1500 1905 136 3 57 chr12 13391680 13391997 -130890492 + AluSx SINE Alu 1 300 -12 23 68 0 0 chr12 13392661 13392705 -130889784 + AT_rich Low_complexity Low_complexity 1 44 0 680 108 117 33 chr12 13392912 13393032 -130889457 + FLAM_C SINE Alu 9 138 -5 569 265 61 85 chr12 13393045 13393089 -130889400 + L1MC4a LINE L1 4730 4774 -1558 2572 53 7 0 chr12 13393089 13393392 -130889097 + AluY SINE Alu 1 305 -6 569 265 61 85 chr12 13393392 13393911 -130888578 + L1MC4a LINE L1 4774 5304 -1028 1890 147 0 23 chr12 13393911 13394218 -130888271 + AluSx SINE Alu 1 300 -12 569 265 61 85 chr12 13394218 13394262 -130888227 + L1MC4a LINE L1 5304 5348 -984 2069 101 17 20 chr12 13394262 13394558 -130887931 + AluSp SINE Alu 1 295 -18 569 265 61 85 chr12 13394558 13394818 -130887671 + L1MC4a LINE L1 5348 5588 -744 1522 150 80 29 chr12 13394836 13395150 -130887339 - LTR10A LTR ERV1 -99 510 181 243 258 16 48 chr12 13395205 13395329 -130887160 - LTR10A LTR ERV1 -309 300 181 344 215 9 0 chr12 13395566 13395673 -130886816 + CT-rich Low_complexity Low_complexity 1 108 0 2982 63 0 0 chr12 13395846 13396213 -130886276 + L1PA5 LINE L1 5783 6149 -5 349 248 62 31 chr12 13396379 13396508 -130885981 + L1MC4a LINE L1 5810 5942 -1866 1761 161 16 29 chr12 13396750 13397060 -130885429 - AluJo SINE Alu -6 306 1 2155 108 0 41 chr12 13397073 13397388 -130885101 - AluSx SINE Alu -6 306 5 24 53 0 0 chr12 13398047 13398085 -130884404 + AT_rich Low_complexity Low_complexity 1 38 0 304 287 42 14 chr12 13398130 13398273 -130884216 + L2 LINE L2 2712 2858 -456 291 290 73 40 chr12 13398552 13398676 -130883813 + L2 LINE L2 3145 3272 0 200 111 28 0 chr12 13399815 13399851 -130882638 + (CACAA)n Simple_repeat Simple_repeat 4 40 0 2216 113 10 0 chr12 13400576 13400876 -130881613 + AluSx SINE Alu 1 303 -9 26 50 0 0 chr12 13401246 13401286 -130881203 + AT_rich Low_complexity Low_complexity 1 40 0 1120 161 0 0 chr12 13401318 13401486 -130881003 - AluJb SINE Alu -16 296 129 2268 91 0 26 chr12 13401505 13401813 -130880676 + AluSg SINE Alu 1 300 -10 692 151 92 164 chr12 13401822 13402060 -130880429 + AluJo SINE Alu 41 261 -51 2282 96 7 0 chr12 13402122 13402413 -130880076 + AluSp SINE Alu 1 293 -20 1541 127 26 136 chr12 13402790 13403136 -130879353 + AluYb8 SINE Alu 1 308 0 2379 98 0 13 chr12 13403338 13403654 -130878835 + AluSx SINE Alu 1 312 0 2504 64 0 13 chr12 13404723 13405037 -130877452 - AluY SINE Alu -1 310 1 2272 93 30 3 chr12 13405478 13405779 -130876710 + AluSx SINE Alu 1 309 -3 2519 67 3 0 chr12 13406876 13407176 -130875313 - AluY SINE Alu -10 301 1 2224 117 3 0 chr12 13407351 13407649 -130874840 + AluSx SINE Alu 1 299 -13 2361 79 3 0 chr12 13408401 13408692 -130873797 + AluY SINE Alu 6 297 -14 401 237 21 0 chr12 13408698 13408791 -130873698 - MER53 DNA DNA -94 95 1 1633 142 19 111 chr12 13408988 13409122 -130873367 - L1MB7 LINE L1 0 6184 6039 2317 97 7 0 chr12 13409122 13409432 -130873057 - AluSp SINE Alu -1 312 1 1633 142 19 111 chr12 13409432 13409721 -130872768 - L1MB7 LINE L1 -145 6039 5800 1096 152 34 0 chr12 13409721 13409899 -130872590 - AluJo SINE Alu -12 300 117 228 23 0 68 chr12 13409954 13409998 -130872491 + (TTC)n Simple_repeat Simple_repeat 1 41 0 919 192 149 18 chr12 13410003 13410024 -130872465 - L1ME3A LINE L1 -345 5825 5808 1952 155 3 3 chr12 13410024 13410333 -130872156 - AluJb SINE Alu -3 309 1 919 192 149 18 chr12 13410333 13410558 -130871931 - L1ME3A LINE L1 -362 5808 5547 2458 59 7 7 chr12 13411940 13412243 -130870246 - AluSp SINE Alu -10 303 1 2192 99 16 22 chr12 13413055 13413368 -130869121 - AluSx SINE Alu -1 311 1 1132 157 45 10 chr12 13413536 13413734 -130868755 - AluJo SINE Alu -7 305 101 1683 108 0 54 chr12 13413931 13414098 -130868391 - AluSx SINE Alu -12 300 150 1828 110 6 113 chr12 13414098 13414424 -130868065 - AluSx SINE Alu -21 291 1 1683 108 0 54 chr12 13414424 13414514 -130867975 - AluSx SINE Alu -162 150 57 2115 119 14 0 chr12 13414570 13414865 -130867624 - AluSc SINE Alu -10 299 1 422 274 115 0 chr12 13416487 13416644 -130865845 + MIR SINE MIR 88 262 0 195 42 0 0 chr12 13416714 13416738 -130865751 + (T)n Simple_repeat Simple_repeat 1 24 0 10547 59 18 42 chr12 13416738 13418158 -130864331 - SVA Other Other 0 1386 1 1748 164 13 17 chr12 13418401 13418699 -130863790 + AluSx SINE Alu 1 297 -15 1709 173 29 10 chr12 13419297 13419603 -130862886 - AluJb SINE Alu 0 312 1 366 327 74 25 chr12 13419799 13419961 -130862528 - L2 LINE L2 0 3272 3103 746 215 117 44 chr12 13420157 13420310 -130862179 - MER58A DNA MER1_type -2197 223 50 2477 88 3 0 chr12 13420310 13420618 -130861871 + AluSp SINE Alu 1 309 -4 746 215 117 44 chr12 13420618 13420669 -130861820 - MER58A DNA MER1_type -2370 50 4 305 314 0 39 chr12 13420798 13420900 -130861589 + MER5A DNA MER1_type 89 186 -3 321 272 40 32 chr12 13420913 13421038 -130861451 - L2 LINE L2 -557 2757 2632 418 349 52 15 chr12 13421039 13421286 -130861203 + MIR SINE MIR 3 255 -7 312 329 90 22 chr12 13421321 13421598 -130860891 - L2 LINE L2 -1046 2268 1973 288 318 38 15 chr12 13422272 13422404 -130860085 - L2 LINE L2 -1 3271 3137 1269 204 136 50 chr12 13422744 13423209 -130859280 + MLT1D LTR MaLR 1 505 0 2181 190 161 101 chr12 13423503 13424348 -130858141 - LTR28 LTR ERV1 0 1020 1 184 314 79 36 chr12 13424864 13425004 -130857485 + L2 LINE L2 3168 3313 0 256 306 66 8 chr12 13425007 13425128 -130857361 + MIR SINE MIR 114 241 -21 866 152 6 13 chr12 13425616 13425774 -130856715 - L1MB7 LINE L1 0 6184 6028 324 226 0 0 chr12 13425776 13425838 -130856651 + L1MC2 LINE L1 5767 5828 -516 865 142 0 0 chr12 13425843 13425970 -130856519 + FLAM_A SINE Alu 16 142 0 2241 131 117 13 chr12 13425981 13426439 -130856050 + L1MC2 LINE L1 5816 6344 0 4337 132 81 17 chr12 13426443 13426968 -130855521 - L1MB7 LINE L1 -145 6039 5549 2185 85 21 7 chr12 13426968 13427251 -130855238 - AluSc SINE Alu -21 288 2 4337 132 81 17 chr12 13427251 13427679 -130854810 - L1MB7 LINE L1 -635 5549 5005 872 177 16 47 chr12 13427679 13427871 -130854618 - AluJb SINE Alu -10 302 117 7625 211 40 27 chr12 13427871 13429916 -130852573 - L1MB7 LINE L1 -1170 4976 2905 229 183 0 118 chr12 13429920 13430013 -130852476 - L1MB7 LINE L1 -3200 2946 2865 2926 10 0 0 chr12 13431138 13431449 -130851040 - AluYa5 SINE Alu 0 311 1 21 0 0 0 chr12 13431831 13431852 -130850637 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr12 13431960 13431993 -130850496 + AT_rich Low_complexity Low_complexity 1 33 0 2162 130 0 9 chr12 13431993 13432309 -130850180 - AluSq SINE Alu 0 313 1 1109 127 0 0 chr12 13432373 13432531 -130849958 + AluSq SINE Alu 149 306 -7 952 282 113 28 chr12 13432857 13433354 -130849135 - MARNA DNA Mariner -39 547 9 23 68 0 0 chr12 13433616 13433660 -130848829 + AT_rich Low_complexity Low_complexity 1 44 0 1778 137 16 49 chr12 13433848 13434154 -130848335 + AluJo SINE Alu 3 298 -14 1683 169 26 30 chr12 13434158 13434460 -130848029 + AluJb SINE Alu 1 301 -11 180 0 0 0 chr12 13434534 13434554 -130847935 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 25 65 0 0 chr12 13434597 13434643 -130847846 + AT_rich Low_complexity Low_complexity 1 46 0 499 263 74 16 chr12 13435037 13435463 -130847026 + L1ME4a LINE L1 5350 5887 -234 2339 104 3 7 chr12 13435484 13435793 -130846696 - AluY SINE Alu -3 308 1 284 287 62 31 chr12 13436109 13436238 -130846251 + L2 LINE L2 3172 3304 -9 41 21 0 0 chr12 13436587 13436635 -130845854 + AT_rich Low_complexity Low_complexity 1 48 0 1573 146 0 8 chr12 13436831 13437070 -130845419 + AluJb SINE Alu 1 237 -75 2117 144 13 0 chr12 13437231 13437530 -130844959 + AluSx SINE Alu 1 303 -9 355 248 62 31 chr12 13437757 13437886 -130844603 - MIR SINE MIR -112 150 18 4392 155 79 13 chr12 13437892 13438736 -130843753 - L1MB5 LINE L1 0 6174 5275 6700 49 140 66 chr12 13438736 13439827 -130842662 - MER11A LTR ERVK 0 1266 1 1561 195 43 16 chr12 13439827 13440201 -130842288 - L1MB5 LINE L1 -866 5280 4897 261 0 0 0 chr12 13440299 13440328 -130842161 + (TTA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr12 13440328 13440351 -130842138 + AT_rich Low_complexity Low_complexity 1 23 0 2288 100 0 3 chr12 13440387 13440677 -130841812 - AluSx SINE Alu -19 293 5 584 138 0 0 chr12 13440770 13440864 -130841625 + L1PB3 LINE L1 6054 6147 -7 288 0 0 0 chr12 13442733 13442765 -130839724 + (CTAGT)n Simple_repeat Simple_repeat 5 36 0 269 227 127 18 chr12 13444019 13444129 -130838360 + MIR SINE MIR 74 195 -67 514 237 15 157 chr12 13444509 13444707 -130837782 + MER91A DNA MER1_type 1 170 -26 752 221 0 32 chr12 13444763 13444917 -130837572 - MER63A DNA MER1_type -2 208 60 2024 121 0 7 chr12 13445215 13445504 -130836985 - AluSx SINE Alu -25 287 1 255 128 0 0 chr12 13446139 13446178 -130836311 - MSTA LTR MaLR 0 428 390 782 69 0 0 chr12 13446178 13446279 -130836210 + AluY SINE Alu 211 311 0 2045 98 126 28 chr12 13446285 13446641 -130835848 - MSTA LTR MaLR -37 391 1 10359 156 32 2 chr12 13446641 13448244 -130834245 - MSTA-int LTR MaLR 0 1651 1 2107 134 161 13 chr12 13448244 13448617 -130833872 - MSTA LTR MaLR 0 428 1 1075 180 5 0 chr12 13449005 13449194 -130833295 - AluSg/x SINE Alu -5 307 118 839 132 25 0 chr12 13449242 13449363 -130833126 - FLAM_C SINE Alu -19 124 1 574 217 81 30 chr12 13449585 13449780 -130832709 + MER63 DNA MER1_type 1 1685 -3 366 171 299 0 chr12 13449810 13449927 -130832562 - MLT1L LTR MaLR -2 613 462 * 1527 87 9 39 chr12 13449901 13450085 -130832404 + MER41A LTR ERV1 244 421 -133 2357 110 0 0 chr12 13450085 13450393 -130832096 - AluSx SINE Alu -2 310 3 1527 87 9 39 chr12 13450393 13450438 -130832051 + MER41A LTR ERV1 421 466 -88 1360 244 111 28 chr12 13450452 13450608 -130831881 - MLT1L LTR MaLR -148 467 325 2575 82 102 3 chr12 13450608 13450951 -130831538 - MER51B LTR ERV1 0 377 1 1360 244 111 28 chr12 13450951 13451225 -130831264 - MLT1L LTR MaLR -290 325 1 1956 134 25 32 chr12 13451633 13451947 -130830542 - AluJb SINE Alu 0 312 1 2195 96 7 4 chr12 13451959 13452291 -130830198 - AluSx SINE Alu 0 333 1 2082 116 0 23 chr12 13452375 13452709 -130829780 + AluSx SINE Alu 1 327 0 1194 226 135 69 chr12 13452797 13453288 -130829201 + MLT1F1 LTR MaLR 1 525 -42 195 42 0 0 chr12 13453304 13453328 -130829161 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 835 213 0 52 chr12 13453331 13453505 -130828984 + FRAM SINE Alu 1 165 -1 608 140 83 102 chr12 13453505 13453662 -130828827 + MLT2C2 LTR ERVL 303 456 -8 454 278 113 0 chr12 13453662 13453813 -130828676 - MIR SINE MIR -94 168 1 794 171 16 0 chr12 13454489 13454618 -130827871 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chr12 13454618 13454639 -130827850 + AT_rich Low_complexity Low_complexity 1 21 0 1195 65 0 19 chr12 13455367 13455522 -130826967 + AluSg/x SINE Alu 83 234 -76 873 110 96 14 chr12 13455549 13455695 -130826794 - AluJo SINE Alu -125 187 30 2164 104 0 0 chr12 13455734 13456013 -130826476 + AluSg SINE Alu 1 279 -31 201 39 0 0 chr12 13456021 13456047 -130826442 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2612 37 0 40 chr12 13456086 13456410 -130826079 + AluY SINE Alu 1 311 0 280 291 29 0 chr12 13456465 13456568 -130825921 + MIR3 SINE MIR 103 208 0 1966 133 31 0 chr12 13457442 13457735 -130824754 + AluSx SINE Alu 1 302 -10 2467 83 0 10 chr12 13458438 13458751 -130823738 + AluSx SINE Alu 1 310 -2 489 250 109 27 chr12 13458878 13459062 -130823427 + MIR SINE MIR 20 218 -44 772 197 8 0 chr12 13462387 13462514 -130819975 + FLAM_A SINE Alu 1 128 -5 2014 114 17 0 chr12 13463071 13463361 -130819128 - AluSx SINE Alu -17 295 1 30 0 0 0 chr12 13463552 13463582 -130818907 + AT_rich Low_complexity Low_complexity 1 30 0 2462 80 0 0 chr12 13463711 13464022 -130818467 + AluY SINE Alu 1 311 0 2318 48 62 0 chr12 13464628 13464920 -130817569 + AluY SINE Alu 1 310 -1 297 273 33 33 chr12 13465054 13465175 -130817314 - L2 LINE L2 -213 3059 2939 771 216 18 30 chr12 13465469 13465636 -130816853 - MER5B DNA MER1_type -6 172 8 212 352 48 24 chr12 13465663 13465788 -130816701 + L2 LINE L2 3137 3264 -8 2276 97 7 13 chr12 13466480 13466788 -130815701 + AluSx SINE Alu 1 306 -6 434 294 192 0 chr12 13466844 13466990 -130815499 + L2 LINE L2 3099 3272 0 1939 183 62 16 chr12 13467006 13467443 -130815046 + LTR37B LTR ERV1 9 465 -3 307 220 451 12 chr12 13467879 13468052 -130814437 - MIR SINE MIR -3 259 11 782 201 101 50 chr12 13468609 13468808 -130813681 - MER63A DNA MER1_type 0 210 2 960 132 0 0 chr12 13468973 13469102 -130813387 - FLAM_C SINE Alu -14 129 1 747 109 286 7 chr12 13469234 13469381 -130813108 - MER53 DNA DNA -1 188 1 620 278 84 0 chr12 13469447 13469638 -130812851 + MIR SINE MIR 9 215 -47 1916 121 0 25 chr12 13470108 13470390 -130812099 + AluSx SINE Alu 21 295 -17 2239 133 0 0 chr12 13471536 13471836 -130810653 + AluSx SINE Alu 1 300 -12 536 258 26 53 chr12 13471918 13472108 -130810381 - L2 LINE L2 -26 3287 3103 229 182 52 130 chr12 13472274 13472351 -130810138 + MLT1L LTR MaLR 217 287 -328 245 266 128 0 chr12 13472525 13472619 -130809870 + MLT1L LTR MaLR 510 615 0 434 295 175 66 chr12 13472619 13473030 -130809459 - L2 LINE L2 -234 3079 2616 2115 99 7 0 chr12 13473030 13473303 -130809186 + AluSx SINE Alu 30 304 -8 824 144 46 110 chr12 13473311 13473484 -130809005 + AluJo SINE Alu 86 247 -65 589 248 241 4 chr12 13473485 13473751 -130808738 - L2 LINE L2 -714 2600 2272 325 291 64 81 chr12 13473787 13474021 -130808468 - L2 LINE L2 0 3313 3084 3610 163 45 8 chr12 13474480 13475083 -130807406 + MLT1E2 LTR MaLR 2 626 0 184 242 0 0 chr12 13475228 13475261 -130807228 + MIR SINE MIR 30 62 -146 431 278 125 7 chr12 13475269 13475413 -130807076 + MIR3 SINE MIR 25 185 -23 243 197 113 28 chr12 13475889 13475960 -130806529 - L2 LINE L2 0 3272 3196 1420 109 5 0 chr12 13476276 13476468 -130806021 - AluSx SINE Alu -10 302 110 832 102 0 0 chr12 13476540 13476648 -130805841 - AluSx SINE Alu -204 108 1 2497 91 0 0 chr12 13476863 13477172 -130805317 + AluSx SINE Alu 1 309 -3 189 107 0 0 chr12 13477770 13477798 -130804691 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 532 105 13 0 chr12 13477799 13477875 -130804614 - MADE1 DNA Mariner -3 77 1 1809 179 0 0 chr12 13477877 13478168 -130804321 - AluSx SINE Alu -21 291 1 887 212 0 0 chr12 13478234 13478380 -130804109 + MER20 DNA MER1_type 2 147 -72 1091 179 0 36 chr12 13478384 13478579 -130803910 + AluJo SINE Alu 5 192 -120 619 191 19 0 chr12 13478636 13478741 -130803748 + AluJo SINE Alu 192 298 -14 418 85 32 106 chr12 13478746 13478840 -130803649 + MER20 DNA MER1_type 133 219 0 589 289 55 37 chr12 13478840 13479058 -130803431 + MIR SINE MIR 31 252 -10 657 230 0 18 chr12 13479073 13479238 -130803251 + L1ME4a LINE L1 5955 6116 -5 539 258 90 0 chr12 13479288 13479443 -130803046 + MIR SINE MIR 20 188 -74 1619 158 44 37 chr12 13479578 13479766 -130802723 - AluJb SINE Alu -12 300 108 2171 116 0 0 chr12 13479766 13480060 -130802429 - AluSx SINE Alu -18 294 1 1619 158 44 37 chr12 13480060 13480169 -130802320 - AluJb SINE Alu -204 108 1 211 340 110 0 chr12 13481538 13481638 -130800851 - L2 LINE L2 -5 3267 3157 1094 199 57 16 chr12 13482483 13482729 -130799760 + MIR SINE MIR 2 257 -5 25 0 0 0 chr12 13484125 13484150 -130798339 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr12 13485072 13485106 -130797383 + AT_rich Low_complexity Low_complexity 1 34 0 538 240 178 18 chr12 13485567 13485792 -130796697 - MIR SINE MIR 0 262 2 707 290 49 11 chr12 13486439 13486725 -130795764 + Charlie2 DNA MER1_type 23 319 -2463 499 228 31 16 chr12 13486732 13486859 -130795630 + Charlie2 DNA MER1_type 1855 1983 -879 981 171 0 13 chr12 13486884 13487042 -130795447 + FRAM SINE Alu 2 157 -9 780 254 132 31 chr12 13487042 13487397 -130795092 + L1MC4 LINE L1 7105 7495 -547 282 235 71 10 chr12 13487468 13487566 -130794923 + L1MC4 LINE L1 7492 7595 -447 2129 179 66 2 chr12 13487989 13488385 -130794104 - MSTA LTR MaLR 0 428 8 1771 181 136 78 chr12 13488686 13489172 -130793317 + MLT1F1 LTR MaLR 1 514 -53 240 267 0 0 chr12 13489208 13489268 -130793221 + MLT1F1 LTR MaLR 481 540 -2 227 104 21 0 chr12 13490221 13490269 -130792220 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 783 169 0 0 chr12 13491485 13491603 -130790886 - FLAM_C SINE Alu -14 119 2 2258 101 0 0 chr12 13492786 13493072 -130789417 - AluSg SINE Alu -24 286 1 789 194 61 6 chr12 13493091 13493256 -130789233 - MER5B DNA MER1_type 0 178 5 2548 57 0 25 chr12 13493260 13493577 -130788912 - AluY SINE Alu -2 309 1 355 257 193 7 chr12 13493680 13493820 -130788669 - MIR SINE MIR -62 200 35 315 0 0 0 chr12 13495411 13495446 -130787043 + (T)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 13496224 13496248 -130786241 + (A)n Simple_repeat Simple_repeat 1 24 0 2234 96 7 3 chr12 13497688 13497980 -130784509 - AluSg SINE Alu -17 293 1 2392 85 0 3 chr12 13498131 13498424 -130784065 + AluSg SINE Alu 1 292 -18 664 176 0 0 chr12 13498585 13498693 -130783796 + FLAM_A SINE Alu 13 120 -22 324 269 103 0 chr12 13498950 13499028 -130783461 - MLT1L LTR MaLR -226 389 304 835 165 0 0 chr12 13499050 13499183 -130783306 - FLAM_C SINE Alu 0 133 1 231 167 0 0 chr12 13499203 13499245 -130783244 + CT-rich Low_complexity Low_complexity 2 43 0 1100 192 0 0 chr12 13499250 13499432 -130783057 - AluJb SINE Alu -4 308 127 300 265 13 29 chr12 13499435 13499572 -130782917 - MLT1J LTR MaLR -310 305 106 828 144 85 44 chr12 13499772 13500033 -130782456 + MER33 DNA MER1_type 5 363 0 1644 180 41 3 chr12 13500719 13501014 -130781475 + AluJb SINE Alu 1 306 -6 188 33 0 33 chr12 13501305 13501335 -130781154 + (AATAG)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr12 13501335 13501364 -130781125 + AT_rich Low_complexity Low_complexity 1 29 0 366 264 28 111 chr12 13502103 13502247 -130780242 + L2 LINE L2 3140 3271 -1 2292 116 0 0 chr12 13503290 13503592 -130778897 + AluSx SINE Alu 1 302 -10 485 88 0 0 chr12 13504184 13504252 -130778237 - Alu SINE Alu -12 299 232 1183 101 0 0 chr12 13504252 13504400 -130778089 + AluSp SINE Alu 148 295 -18 2015 141 0 13 chr12 13504621 13504920 -130777569 - AluJo SINE Alu -17 295 1 3059 260 87 23 chr12 13505184 13506571 -130775918 + L2 LINE L2 1826 3313 0 978 186 0 6 chr12 13506786 13506969 -130775520 - AluJo SINE Alu -9 303 122 1926 117 4 0 chr12 13507060 13507326 -130775163 - AluJo SINE Alu -2 310 44 185 245 133 41 chr12 13507701 13507799 -130774690 + MIR SINE MIR 84 190 -72 2312 94 0 7 chr12 13507837 13508134 -130774355 + AluSg1 SINE Alu 1 295 -14 1768 161 11 3 chr12 13508519 13508805 -130773684 - AluJo SINE Alu -20 292 5 2311 103 0 3 chr12 13509140 13509441 -130773048 + AluSq SINE Alu 1 300 -13 1550 190 38 14 chr12 13509621 13509911 -130772578 - AluJo SINE Alu -15 297 1 2157 101 39 0 chr12 13510093 13510379 -130772110 + AluSc SINE Alu 1 297 -12 873 232 52 69 chr12 13510417 13510729 -130771760 - MLT1J1 LTR MaLR -143 368 21 362 217 0 0 chr12 13510738 13510798 -130771691 + FRAM/FAM SINE Alu 31 90 -76 973 161 19 0 chr12 13511748 13511903 -130770586 - FRAM SINE Alu -19 157 1 949 245 98 60 chr12 13512029 13512128 -130770361 + L2 LINE L2 2730 2824 -489 2353 101 3 7 chr12 13512128 13512434 -130770055 - AluSx SINE Alu -7 305 1 949 245 98 60 chr12 13512434 13512607 -130769882 + L2 LINE L2 2824 2989 -324 2048 132 3 0 chr12 13512607 13512902 -130769587 - AluSx SINE Alu -16 296 1 949 245 98 60 chr12 13512902 13513191 -130769298 + L2 LINE L2 2989 3312 -1 498 297 34 11 chr12 13514762 13514937 -130767552 + MIR3 SINE MIR 15 193 -15 21 36 0 0 chr12 13515901 13515929 -130766560 + GC_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr12 13519571 13519611 -130762878 + AT_rich Low_complexity Low_complexity 1 40 0 1305 132 18 27 chr12 13519682 13519902 -130762587 - MER20 DNA MER1_type -1 218 1 23 33 0 0 chr12 13520983 13521013 -130761476 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr12 13522358 13522382 -130760107 + (T)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr12 13523109 13523149 -130759340 + GC_rich Low_complexity Low_complexity 1 40 0 26 93 0 0 chr12 13523387 13523462 -130759027 + GC_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr12 13523511 13523535 -130758954 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 13524081 13524103 -130758386 + GC_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr12 13524304 13524358 -130758131 + GC_rich Low_complexity Low_complexity 1 54 0 237 196 0 0 chr12 13524429 13524480 -130758009 + (TG)n Simple_repeat Simple_repeat 2 52 0 42 48 0 0 chr12 13524704 13524767 -130757722 + GC_rich Low_complexity Low_complexity 1 63 0 228 163 0 0 chr12 13525227 13525270 -130757219 + A-rich Low_complexity Low_complexity 1 43 0 434 285 14 54 chr12 13525946 13526167 -130756322 + L3 LINE CR1 1364 1575 -2 1378 138 62 4 chr12 13526235 13526510 -130755979 + MER33 DNA MER1_type 34 324 0 1307 214 27 17 chr12 13526653 13526970 -130755519 - AluJo SINE Alu 0 321 2 198 0 0 0 chr12 13527026 13527048 -130755441 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1641 166 14 10 chr12 13527048 13527338 -130755151 - AluJo SINE Alu -21 291 1 2026 143 10 10 chr12 13527455 13527763 -130754726 + AluJb SINE Alu 1 308 -4 296 257 14 0 chr12 13527963 13528037 -130754452 + L1ME4a LINE L1 4502 4576 -1570 784 172 0 15 chr12 13528496 13528630 -130753859 - FLAM_C SINE Alu 0 133 2 714 164 153 63 chr12 13528631 13528820 -130753669 + AluJo SINE Alu 54 259 -53 193 29 59 0 chr12 13528832 13528866 -130753623 + (TAA)n Simple_repeat Simple_repeat 2 37 0 246 154 0 0 chr12 13528875 13528927 -130753562 + L1MB4 LINE L1 6129 6180 0 1549 171 107 0 chr12 13528948 13529098 -130753391 - AluJo SINE Alu -21 291 158 468 0 0 0 chr12 13529098 13529150 -130753339 + (TG)n Simple_repeat Simple_repeat 1 52 0 183 42 0 0 chr12 13529149 13529173 -130753316 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1549 171 107 0 chr12 13529150 13529285 -130753204 - AluJo SINE Alu -154 158 1 292 311 73 46 chr12 13529369 13529470 -130753019 + MIR SINE MIR 12 109 -153 2282 121 0 0 chr12 13529470 13529783 -130752706 + AluSq SINE Alu 1 313 0 292 311 73 46 chr12 13529783 13529900 -130752589 + MIR SINE MIR 109 236 -26 2470 43 0 0 chr12 13529931 13530247 -130752242 + AluY SINE Alu 1 316 0 270 133 100 0 chr12 13530396 13530456 -130752033 + L1MB4 LINE L1 6113 6178 -2 376 230 90 22 chr12 13530573 13530751 -130751738 + L1ME4a LINE L1 5209 5398 -748 2206 107 0 17 chr12 13531530 13531829 -130750660 + AluSx SINE Alu 17 310 -2 1759 152 10 40 chr12 13532103 13532406 -130750083 + AluJb SINE Alu 1 294 -18 234 221 129 57 chr12 13532449 13532589 -130749900 + L1ME4a LINE L1 5881 6030 -91 2363 96 0 3 chr12 13532674 13532975 -130749514 - AluSx SINE Alu -12 300 1 215 239 45 30 chr12 13533585 13533652 -130748837 + MIR3 SINE MIR 134 201 -7 691 163 8 0 chr12 13534200 13534323 -130748166 + FLAM_A SINE Alu 19 142 0 239 314 145 17 chr12 13534380 13534703 -130747786 - L2 LINE L2 -171 3101 2737 1103 188 82 78 chr12 13534716 13534847 -130747642 + AluJo SINE Alu 4 133 -169 225 0 0 0 chr12 13534847 13534872 -130747617 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1103 188 82 78 chr12 13534872 13535033 -130747456 + AluJo SINE Alu 133 297 -5 1752 148 49 18 chr12 13535036 13535145 -130747344 + AluJb SINE Alu 15 119 -193 2167 115 20 3 chr12 13535145 13535449 -130747040 + AluSq SINE Alu 1 309 -4 1752 148 49 18 chr12 13535449 13535623 -130746866 + AluJb SINE Alu 119 307 -5 250 246 0 0 chr12 13537004 13537061 -130745428 - MIR SINE MIR -16 246 190 1854 159 10 13 chr12 13537274 13537575 -130744914 - AluJo SINE Alu -10 302 3 556 243 133 32 chr12 13537868 13538086 -130744403 + MLT1J LTR MaLR 272 511 0 2214 118 0 13 chr12 13538888 13539055 -130743434 - AluSx SINE Alu -12 300 137 2250 114 0 0 chr12 13539055 13539352 -130743137 - AluY SINE Alu -14 297 1 2214 118 0 13 chr12 13539352 13539488 -130743001 - AluSx SINE Alu -175 137 1 450 69 0 0 chr12 13539927 13539985 -130742504 + AluJ/FLAM SINE Alu 2 59 -253 1806 153 7 31 chr12 13540291 13540585 -130741904 - AluJo SINE Alu -25 287 1 220 254 260 34 chr12 13540793 13540970 -130741519 - MIR SINE MIR 0 262 46 1398 81 0 6 chr12 13541556 13541730 -130740759 + AluSg1 SINE Alu 1 173 -136 2476 78 3 0 chr12 13542313 13542619 -130739870 - AluSc SINE Alu -2 307 1 2583 57 7 0 chr12 13542854 13543155 -130739334 + AluY SINE Alu 1 303 -8 1882 167 16 0 chr12 13543732 13544038 -130738451 - AluJb SINE Alu -1 311 1 233 54 71 36 chr12 13544392 13544448 -130738041 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2104 140 13 0 chr12 13544468 13544775 -130737714 - AluSx SINE Alu -1 311 1 1706 155 6 44 chr12 13545406 13545722 -130736767 + AluJo SINE Alu 1 304 -8 681 206 97 151 chr12 13546052 13546221 -130736268 - L2 LINE L2 0 3313 3137 926 129 0 0 chr12 13546221 13546353 -130736136 + FLAM_C SINE Alu 2 133 0 681 206 97 151 chr12 13546353 13546406 -130736083 - L2 LINE L2 -176 3137 3083 1818 194 53 55 chr12 13546406 13546912 -130735577 - MLT1D LTR MaLR 0 505 1 681 206 97 151 chr12 13546912 13547120 -130735369 - L2 LINE L2 -230 3083 2905 2160 110 20 10 chr12 13547129 13547428 -130735061 - AluSx SINE Alu -10 302 1 853 101 0 164 chr12 13547430 13547589 -130734900 - AluSq/x SINE Alu -180 133 1 3065 221 110 92 chr12 13547589 13548243 -130734246 - L2 LINE L2 -601 2713 2073 606 88 0 0 chr12 13548243 13548323 -130734166 + AluSc SINE Alu 2 81 -228 1981 117 0 0 chr12 13548323 13548588 -130733901 + AluSg1 SINE Alu 36 300 -9 3065 221 110 92 chr12 13548588 13548601 -130733888 - L2 LINE L2 -1241 2073 2062 1521 118 25 0 chr12 13548601 13548827 -130733662 + AluSc SINE Alu 72 302 0 3065 221 110 92 chr12 13548827 13549096 -130733393 - L2 LINE L2 -1252 2062 1800 2466 75 3 0 chr12 13549096 13549402 -130733087 - AluSc SINE Alu -2 307 1 3065 221 110 92 chr12 13549402 13549822 -130732667 - L2 LINE L2 -1514 1800 1247 627 148 0 0 chr12 13549873 13549974 -130732515 + FLAM_A SINE Alu 38 138 -4 2248 114 0 3 chr12 13549977 13550275 -130732214 + AluSx SINE Alu 1 297 -15 1339 296 84 18 chr12 13550314 13550828 -130731661 - LTR67 LTR ERVL -7 550 3 1988 108 54 11 chr12 13551033 13551312 -130731177 + AluSx SINE Alu 1 291 -21 192 347 97 48 chr12 13551932 13552056 -130730433 - L2 LINE L2 0 3272 3143 255 326 0 11 chr12 13552078 13552167 -130730322 - L2 LINE L2 -726 2588 2501 853 165 0 0 chr12 13552451 13552584 -130729905 + FLAM_C SINE Alu 1 133 0 2135 90 14 0 chr12 13552595 13552902 -130729587 + AluSg SINE Alu 1 311 0 388 331 137 23 chr12 13553022 13553409 -130729080 + L2 LINE L2 2354 2784 -530 2352 78 0 14 chr12 13553642 13553963 -130728526 + AluSq SINE Alu 11 313 0 960 221 32 47 chr12 13554496 13554597 -130727892 - ORSL DNA AcHobo -9 266 165 1680 132 117 8 chr12 13554597 13554862 -130727627 + AluSg1 SINE Alu 1 294 -15 802 166 25 25 chr12 13554869 13555032 -130727457 + FRAM SINE Alu 4 166 0 960 221 32 47 chr12 13555032 13555175 -130727314 - ORSL DNA AcHobo -116 159 18 2242 126 0 0 chr12 13556154 13556455 -130726034 - AluSx SINE Alu -11 301 1 312 91 0 0 chr12 13556942 13556986 -130725503 + (TA)n Simple_repeat Simple_repeat 1 44 0 2143 126 0 0 chr12 13557003 13557288 -130725201 - AluSx SINE Alu -27 285 1 4041 93 4 20 chr12 13557484 13558041 -130724448 - LTR14 LTR ERVK 0 548 1 2985 133 114 0 chr12 13558046 13558519 -130723970 + MER1A DNA MER1_type 1 527 0 450 224 119 48 chr12 13558519 13558729 -130723760 + L2 LINE L2 2626 2850 -464 2273 111 3 0 chr12 13558891 13559188 -130723301 - AluSx SINE Alu -14 298 1 354 303 201 15 chr12 13559622 13559797 -130722692 + L2 LINE L2 2925 3066 -247 1646 145 14 18 chr12 13559797 13560079 -130722410 - AluJb SINE Alu -21 291 11 354 303 201 15 chr12 13560079 13560227 -130722262 + L2 LINE L2 3066 3308 -5 664 272 65 23 chr12 13560944 13561161 -130721328 + MIR SINE MIR 28 253 -9 291 250 10 48 chr12 13561832 13561852 -130720637 + L3 LINE CR1 771 790 -787 2155 103 16 41 chr12 13561852 13562172 -130720317 - AluSx SINE Alu 0 312 1 291 250 10 48 chr12 13562172 13562255 -130720234 + L3 LINE CR1 790 870 -707 223 221 19 39 chr12 13562359 13562463 -130720026 + (TTA)n Simple_repeat Simple_repeat 2 103 0 298 233 0 0 chr12 13562479 13562539 -130719950 + L3 LINE CR1 1251 1310 -267 227 241 51 101 chr12 13562760 13562918 -130719571 - L2 LINE L2 -233 3039 2890 1499 149 58 0 chr12 13563405 13563681 -130718808 + L1MA7 LINE L1 5995 6286 -5 365 287 48 8 chr12 13564417 13564564 -130717925 - MIR SINE MIR -64 144 37 674 171 0 0 chr12 13564630 13564741 -130717748 + FLAM_C SINE Alu 5 115 -28 211 299 37 56 chr12 13564794 13564901 -130717588 - L2 LINE L2 -19 3294 3190 2499 65 0 0 chr12 13565435 13565729 -130716760 + AluY SINE Alu 1 294 -17 2310 124 11 8 chr12 13565844 13566198 -130716291 - THE1A LTR MaLR 0 355 1 295 292 132 7 chr12 13566275 13566419 -130716070 + L2 LINE L2 1948 2109 -1205 306 266 12 68 chr12 13566526 13566664 -130715825 + MER5A DNA MER1_type 27 167 -22 231 292 34 22 chr12 13566693 13566782 -130715707 + L2 LINE L2 2221 2310 -1004 2240 92 3 20 chr12 13567693 13567996 -130714493 - AluSp SINE Alu -15 298 1 233 182 0 0 chr12 13568292 13568336 -130714153 - L2 LINE L2 -9 3304 3261 1645 130 146 21 chr12 13570015 13570345 -130712144 - THE1C LTR MaLR -4 371 1 22 0 0 0 chr12 13571550 13571572 -130710917 + AT_rich Low_complexity Low_complexity 1 22 0 2173 57 23 66 chr12 13572161 13572462 -130710027 - AluY SINE Alu -23 288 1 953 206 37 32 chr12 13572488 13572706 -130709783 - MER20 DNA MER1_type 0 219 1 347 324 47 29 chr12 13572749 13572919 -130709570 - MIR SINE MIR -70 192 20 246 287 64 0 chr12 13573395 13573489 -130709000 + MIR SINE MIR 134 233 -29 1595 169 40 33 chr12 13573642 13573944 -130708545 - AluSx SINE Alu -8 304 1 1878 180 3 7 chr12 13573946 13574252 -130708237 - AluJo SINE Alu -7 305 1 351 326 37 7 chr12 13574637 13574772 -130707717 - MIR SINE MIR -75 187 49 335 246 32 63 chr12 13574861 13574987 -130707502 + MIR SINE MIR 79 200 -62 1802 141 10 87 chr12 13575008 13575060 -130707429 + MER46B DNA MER2_type 3 57 -2674 2170 82 65 0 chr12 13575060 13575352 -130707137 - AluSp SINE Alu -1 312 2 1802 141 10 87 chr12 13575352 13575688 -130706801 + MER46B DNA MER2_type 57 236 0 341 230 89 37 chr12 13575856 13575991 -130706498 - L1ME4a LINE L1 -3 6118 5977 615 273 128 54 chr12 13576016 13576500 -130705989 - L1ME4a LINE L1 -251 5870 5351 26 0 0 0 chr12 13577149 13577175 -130705314 + AT_rich Low_complexity Low_complexity 1 26 0 2199 79 7 39 chr12 13577366 13577671 -130704818 + AluY SINE Alu 1 295 -16 1938 159 10 0 chr12 13577825 13578120 -130704369 - AluJb SINE Alu -14 298 1 2196 127 7 0 chr12 13578122 13578429 -130704060 - AluSx SINE Alu -3 309 1 2182 118 3 0 chr12 13578431 13578720 -130703769 - AluSx SINE Alu -22 290 1 2379 45 18 0 chr12 13579215 13579501 -130702988 + AluY SINE Alu 1 291 -20 1499 231 56 31 chr12 13580444 13580854 -130701635 - MLT1C LTR MaLR -1 466 43 2335 100 39 30 chr12 13580854 13581215 -130701274 + THE1B LTR MaLR 1 364 0 1499 231 56 31 chr12 13581215 13581254 -130701235 - MLT1C LTR MaLR -424 43 6 2535 53 0 3 chr12 13581576 13581877 -130700612 + AluY SINE Alu 1 300 -11 317 181 0 28 chr12 13583140 13583212 -130699277 + MIR SINE MIR 80 149 -113 2151 123 24 0 chr12 13583242 13583535 -130698954 - AluSx SINE Alu -12 300 1 340 259 292 0 chr12 13583881 13584066 -130698423 + MIR SINE MIR 23 261 -1 210 330 62 9 chr12 13584090 13584202 -130698287 - MIR SINE MIR -144 118 1 195 129 0 0 chr12 13584208 13584239 -130698250 + (TG)n Simple_repeat Simple_repeat 2 32 0 1715 183 3 7 chr12 13585368 13585652 -130696837 + AluJo SINE Alu 5 287 -25 2489 76 3 0 chr12 13585829 13586131 -130696358 - AluSp SINE Alu -9 304 2 2227 108 3 3 chr12 13586597 13586892 -130695597 + AluSx SINE Alu 1 295 -17 1540 114 0 0 chr12 13587671 13587881 -130694608 + AluSg/x SINE Alu 85 294 -18 2040 125 3 3 chr12 13588501 13588788 -130693701 - AluSc SINE Alu -22 287 1 2186 127 0 0 chr12 13588792 13589092 -130693397 - AluSc SINE Alu -9 300 1 713 146 0 0 chr12 13589092 13589202 -130693287 - AluSg/x SINE Alu -5 307 198 445 152 25 0 chr12 13589675 13589754 -130692735 - L1ME LINE L1 -621 5541 5461 373 163 22 0 chr12 13589783 13589875 -130692614 + CT-rich Low_complexity Low_complexity 1 94 0 875 134 0 0 chr12 13589924 13590051 -130692438 + FLAM_C SINE Alu 5 131 -2 646 195 14 109 chr12 13590068 13590289 -130692200 - L1ME1 LINE L1 -58 6108 5909 1055 186 0 0 chr12 13590289 13590456 -130692033 - AluSp SINE Alu -13 300 134 714 175 21 0 chr12 13590456 13590599 -130691890 - L1ME1 LINE L1 -257 5909 5764 492 189 0 0 chr12 13590589 13590684 -130691805 - L1ME1 LINE L1 -2439 3707 3613 * 1551 99 5 24 chr12 13590684 13590896 -130691593 + AluSp SINE Alu 1 208 -105 898 111 16 0 chr12 13591014 13591169 -130691320 + AluSg/x SINE Alu 154 310 0 262 136 23 0 chr12 13591173 13591217 -130691272 + L1MC5 LINE L1 7023 7067 -894 3859 151 23 2 chr12 13591242 13591846 -130690643 - Tigger7 DNA MER2_type -1869 618 2 662 137 16 99 chr12 13591854 13592036 -130690453 - L1MC5 LINE L1 -995 6966 6800 186 103 0 0 chr12 13592146 13592175 -130690314 + (TTG)n Simple_repeat Simple_repeat 1 29 0 281 234 106 21 chr12 13592312 13592406 -130690083 + MLT1L LTR MaLR 167 268 -347 1591 147 43 0 chr12 13592665 13592946 -130689543 + AluJb SINE Alu 15 306 0 2204 96 0 3 chr12 13592952 13593255 -130689234 + AluSq SINE Alu 1 302 -11 321 308 29 58 chr12 13593286 13593458 -130689031 + L1ME LINE L1 5254 5420 -2388 262 219 143 0 chr12 13593458 13593563 -130688926 - L1MC/D LINE L1 -1993 5815 5696 466 292 23 41 chr12 13594075 13594294 -130688195 + L1ME LINE L1 5582 5796 -325 219 167 0 0 chr12 13594385 13594427 -130688062 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 288 0 0 0 chr12 13594427 13594459 -130688030 + (GA)n Simple_repeat Simple_repeat 2 33 0 1120 144 0 36 chr12 13594459 13594654 -130687835 - AluJo SINE Alu -39 273 86 419 285 100 102 chr12 13594654 13594948 -130687541 - LTR33A LTR ERVL -40 481 176 2138 120 0 3 chr12 13594948 13595249 -130687240 - AluSg SINE Alu -10 300 1 419 285 100 102 chr12 13595249 13595381 -130687108 - LTR33A LTR ERVL -345 176 45 1431 160 89 7 chr12 13595462 13595731 -130686758 + AluJb SINE Alu 3 293 -19 943 130 51 17 chr12 13595734 13595911 -130686578 - L1MA8 LINE L1 -5 6286 6104 555 262 0 8 chr12 13595913 13596039 -130686450 + MER2 DNA MER2_type 7 131 -214 1244 177 129 45 chr12 13596040 13596351 -130686138 - MER2 DNA MER2_type -1 344 8 420 133 36 0 chr12 13596358 13596441 -130686048 + MER2 DNA MER2_type 128 213 -132 2018 117 0 0 chr12 13596551 13596859 -130685630 - AluSx SINE Alu 0 308 1 640 112 65 0 chr12 13596859 13596966 -130685523 - L1MA8 LINE L1 -183 6108 5995 27 0 0 0 chr12 13597179 13597206 -130685283 + AT_rich Low_complexity Low_complexity 1 27 0 549 255 97 33 chr12 13597424 13597673 -130684816 - MLT1J2 LTR MaLR -11 427 169 574 190 10 0 chr12 13597699 13597799 -130684690 - MSTB1 LTR MaLR -77 355 255 797 153 0 0 chr12 13597830 13597948 -130684541 - FLAM_A SINE Alu -15 118 1 1864 151 3 10 chr12 13598185 13598496 -130683993 + AluJb SINE Alu 1 309 -3 1835 132 26 16 chr12 13599158 13599461 -130683028 + AluSx SINE Alu 1 306 -6 1967 143 0 0 chr12 13599560 13599853 -130682636 + AluSx SINE Alu 1 293 -19 1342 183 78 48 chr12 13599857 13599976 -130682513 - MER2 DNA MER2_type -1 343 229 1860 139 20 0 chr12 13599976 13600278 -130682211 + AluSx SINE Alu 1 308 -4 1342 183 78 48 chr12 13600278 13600392 -130682097 - MER2 DNA MER2_type -115 229 120 2092 97 7 3 chr12 13600392 13600681 -130681808 - AluSg SINE Alu -20 290 1 1342 183 78 48 chr12 13600681 13600779 -130681710 - MER2 DNA MER2_type -224 120 1 1506 191 20 7 chr12 13600947 13601075 -130681414 + AluJo SINE Alu 1 126 -186 216 0 0 0 chr12 13601075 13601099 -130681390 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1506 191 20 7 chr12 13601099 13601269 -130681220 + AluJo SINE Alu 126 303 -9 198 300 86 0 chr12 13601271 13601341 -130681148 - MIR SINE MIR -82 126 51 8857 128 89 25 chr12 13601476 13601542 -130680947 + L1MC1 LINE L1 4 64 -6362 1801 176 0 3 chr12 13601542 13601848 -130680641 + AluJb SINE Alu 1 305 -7 8857 128 89 25 chr12 13601848 13602724 -130679765 + L1MC1 LINE L1 64 883 -5543 2071 106 10 0 chr12 13602724 13603017 -130679472 + AluSg SINE Alu 1 296 -14 8857 128 89 25 chr12 13603017 13603839 -130678650 + L1MC1 LINE L1 883 1975 -4451 2883 207 44 9 chr12 13604304 13605532 -130676957 + L1MC1 LINE L1 1956 3229 -3197 1029 144 25 0 chr12 13605532 13605692 -130676797 + FRAM SINE Alu 1 163 -13 864 207 20 59 chr12 13605700 13605875 -130676614 + L1MC1 LINE L1 3228 3387 -3039 1480 188 4 7 chr12 13605875 13606146 -130676343 + AluJo SINE Alu 1 270 -42 864 207 20 59 chr12 13606146 13606274 -130676215 + L1MC1 LINE L1 3387 3519 -2907 5997 171 22 35 chr12 13606275 13606859 -130675630 + L1MC1 LINE L1 5006 5596 -1017 2101 131 0 3 chr12 13606859 13607171 -130675318 + AluSx SINE Alu 1 311 -1 5997 171 22 35 chr12 13607171 13608205 -130674284 + L1MC1 LINE L1 5596 6605 -8 1760 174 0 13 chr12 13608318 13608623 -130673866 + AluJo SINE Alu 5 305 -7 322 357 68 20 chr12 13609332 13609581 -130672908 + L1ME4a LINE L1 4689 4949 -1197 1014 137 23 137 chr12 13610098 13610361 -130672128 - MER46A DNA MER2_type 0 236 4 1653 152 9 61 chr12 13610495 13610824 -130671665 - AluJb SINE Alu 0 312 1 1715 158 0 35 chr12 13610905 13611222 -130671267 - AluJo SINE Alu -6 306 1 266 242 77 22 chr12 13611222 13611313 -130671176 + MLT1H LTR MaLR 110 205 -344 629 327 131 44 chr12 13611320 13612015 -130670474 + L2 LINE L2 2515 3267 -5 610 266 106 47 chr12 13612079 13612418 -130670071 + L1ME4a LINE L1 5534 5892 -229 21 71 0 0 chr12 13612645 13612687 -130669802 + AT_rich Low_complexity Low_complexity 1 42 0 185 193 88 35 chr12 13612727 13612784 -130669705 - L2 LINE L2 -8 3264 3205 911 122 6 45 chr12 13612844 13613000 -130669489 - AluJb SINE Alu -17 295 146 401 140 0 0 chr12 13613004 13613061 -130669428 - AluS SINE Alu -252 58 2 1772 152 16 10 chr12 13613168 13613478 -130669011 - AluJb SINE Alu 0 312 1 2086 102 27 3 chr12 13613755 13614050 -130668439 + AluSq SINE Alu 1 302 -11 868 93 93 47 chr12 13614968 13615140 -130667349 - AluSq SINE Alu -53 260 81 187 154 0 0 chr12 13615165 13615204 -130667285 + MIR SINE MIR 166 204 -58 225 214 0 0 chr12 13615205 13615247 -130667242 - Tigger5 DNA MER2_type -1 2322 2281 234 0 0 0 chr12 13615699 13615725 -130666764 + (TG)n Simple_repeat Simple_repeat 1 26 0 1422 199 28 92 chr12 13615741 13615965 -130666524 - MLT1A2 LTR MaLR 0 374 184 453 50 0 0 chr12 13615965 13616025 -130666464 + (GA)n Simple_repeat Simple_repeat 1 60 0 1422 199 28 92 chr12 13616025 13616192 -130666297 - MLT1A2 LTR MaLR -190 184 8 1211 83 10 57 chr12 13616328 13616543 -130665946 + AluY SINE Alu 99 304 0 1788 114 0 94 chr12 13616553 13616895 -130665594 + AluJo SINE Alu 1 310 -2 360 318 85 39 chr12 13616964 13617093 -130665396 + MIR SINE MIR 5 140 -68 337 269 130 19 chr12 13617220 13617328 -130665161 - MIR SINE MIR -110 152 33 1339 143 64 57 chr12 13618018 13618138 -130664351 + AluJb SINE Alu 1 119 -193 2173 100 3 0 chr12 13618138 13618427 -130664062 + AluSp SINE Alu 1 290 -23 1339 143 64 57 chr12 13618427 13618586 -130663903 + AluJb SINE Alu 119 282 -30 2389 71 0 0 chr12 13619138 13619448 -130663041 + AluY SINE Alu 1 310 -1 2084 105 26 0 chr12 13619960 13620264 -130662225 + AluSx SINE Alu 1 312 0 1570 110 42 4 chr12 13620605 13620842 -130661647 + AluSx SINE Alu 51 296 -16 224 296 68 11 chr12 13621018 13621106 -130661383 - MIR SINE MIR -46 216 124 1156 201 108 24 chr12 13621900 13622188 -130660301 - MLT1C LTR MaLR -17 450 139 207 304 79 95 chr12 13622312 13622343 -130660146 + L2 LINE L2 2851 2881 -391 1488 170 49 10 chr12 13622343 13622631 -130659858 - AluJo SINE Alu -11 301 3 207 304 79 95 chr12 13622631 13622852 -130659637 + L2 LINE L2 2881 3099 -173 2344 70 0 16 chr12 13622897 13623213 -130659276 - AluY SINE Alu 0 311 1 2162 112 0 7 chr12 13623268 13623572 -130658917 - AluSq SINE Alu -11 302 1 194 283 50 0 chr12 13624432 13624492 -130657997 - MIR3 SINE MIR -139 69 7 512 204 277 0 chr12 13624695 13624832 -130657657 + MER96 DNA MER1_type 1 175 0 852 142 14 0 chr12 13624939 13625087 -130657402 + FAM SINE Alu 1 47 -2 1247 154 34 44 chr12 13625431 13625724 -130656765 + MER33 DNA MER1_type 4 293 -31 1312 173 143 8 chr12 13625724 13625990 -130656499 + AluJo SINE Alu 1 302 0 782 212 24 18 chr12 13625995 13626160 -130656329 + FRAM SINE Alu 1 166 0 220 315 55 0 chr12 13626220 13626293 -130656196 - MIR3 SINE MIR -49 159 83 205 262 16 0 chr12 13627522 13627583 -130654906 + CT-rich Low_complexity Low_complexity 1 62 0 2245 84 3 0 chr12 13628434 13628731 -130653758 - AluSp SINE Alu -15 298 1 306 247 143 45 chr12 13629538 13629692 -130652797 - L1 LINE L1 -3279 2867 2699 569 219 138 109 chr12 13629739 13629799 -130652690 + MER58A DNA MER1_type 9 66 -2354 1995 79 11 29 chr12 13629799 13630115 -130652374 - AluSq SINE Alu 0 322 12 569 219 138 109 chr12 13630115 13630263 -130652226 + MER58A DNA MER1_type 66 224 0 349 281 18 82 chr12 13630359 13630479 -130652010 - L1 LINE L1 -3535 2611 2504 1712 180 0 0 chr12 13630479 13630773 -130651716 - AluJb SINE Alu -18 294 1 349 281 18 82 chr12 13630773 13630823 -130651666 - L1 LINE L1 -3642 2504 2452 488 181 65 7 chr12 13630837 13630975 -130651514 - AluSg/x SINE Alu -8 301 156 1897 144 0 0 chr12 13631292 13631577 -130650912 + AluSx SINE Alu 1 285 -27 210 37 0 0 chr12 13631584 13631611 -130650878 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 349 273 141 8 chr12 13631627 13631748 -130650741 + MER5B DNA MER1_type 1 137 -41 621 180 0 0 chr12 13631882 13632004 -130650485 + AluJb SINE Alu 183 304 0 2190 112 0 0 chr12 13632239 13632543 -130649946 + AluSx SINE Alu 1 304 -8 1928 129 0 7 chr12 13632618 13632928 -130649561 - AluSx SINE Alu 0 308 1 1794 161 13 7 chr12 13632939 13633249 -130649240 - AluJo SINE Alu 0 312 1 285 255 234 21 chr12 13637726 13637871 -130644618 + MIR SINE MIR 21 196 -66 879 230 5 11 chr12 13637891 13638078 -130644411 + MER5A DNA MER1_type 4 189 0 30 45 0 0 chr12 13638401 13638445 -130644044 + AT_rich Low_complexity Low_complexity 1 44 0 2161 100 0 7 chr12 13639320 13639620 -130642869 - AluSx SINE Alu -14 298 1 200 260 20 0 chr12 13639958 13640008 -130642481 + L2 LINE L2 3257 3307 -6 273 209 44 44 chr12 13641170 13641261 -130641228 - MLT1J LTR MaLR -383 128 38 599 261 156 18 chr12 13642304 13642522 -130639967 - MIR SINE MIR 0 262 15 2072 95 16 33 chr12 13642522 13642826 -130639663 - AluSx SINE Alu -9 303 5 2044 126 0 0 chr12 13642850 13643144 -130639345 - AluSq SINE Alu -19 294 1 1568 164 0 15 chr12 13643144 13643418 -130639071 + AluJb SINE Alu 27 296 -16 2205 94 17 0 chr12 13643602 13643900 -130638589 + AluSx SINE Alu 1 303 -9 599 261 156 18 chr12 13643900 13644118 -130638371 + MIR SINE MIR 15 262 0 1189 163 8 17 chr12 13644394 13644633 -130637856 + AluSx SINE Alu 17 253 -59 1343 142 58 0 chr12 13645065 13645290 -130637199 - AluJb SINE Alu -74 238 1 576 225 8 23 chr12 13645488 13645617 -130636872 + FLAM_A SINE Alu 1 127 -6 431 233 25 75 chr12 13645617 13645768 -130636721 + MLT1E2 LTR MaLR 95 239 -266 1877 196 35 51 chr12 13645817 13646270 -130636219 + MLT1D LTR MaLR 1 446 -59 1873 123 27 0 chr12 13646272 13646564 -130635925 + AluJo SINE Alu 1 300 -12 1895 95 0 0 chr12 13646565 13646818 -130635671 + AluSq SINE Alu 1 253 -60 1686 133 50 0 chr12 13647498 13647777 -130634712 + AluSx SINE Alu 1 293 -19 2207 81 0 0 chr12 13648452 13648776 -130633713 + AluSq SINE Alu 1 324 0 2014 147 28 17 chr12 13648879 13649234 -130633255 - L1PA16 LINE L1 -5 6161 5803 807 222 20 0 chr12 13649360 13649513 -130632976 - FRAM SINE Alu -10 156 1 842 102 177 0 chr12 13650735 13650882 -130631607 - L1MA4 LINE L1 -14 6286 6114 3713 140 44 16 chr12 13651541 13652149 -130630340 + MER51A LTR ERV1 1 625 -9 2303 91 3 0 chr12 13652329 13652638 -130629851 + AluSp SINE Alu 1 310 -3 1754 156 0 44 chr12 13653012 13653327 -130629162 - AluJb SINE Alu -11 301 1 1542 201 0 3 chr12 13653592 13653885 -130628604 - AluJb SINE Alu -16 296 5 2043 195 87 9 chr12 13653924 13654386 -130628103 + MLT1D LTR MaLR 1 498 -7 388 277 190 40 chr12 13655369 13655622 -130626867 + HAL1 LINE L1 821 1111 -1396 1607 144 10 48 chr12 13655622 13655935 -130626554 + AluJo SINE Alu 1 301 -11 275 257 92 9 chr12 13656042 13656151 -130626338 + HAL1 LINE L1 1405 1522 -985 1512 118 54 0 chr12 13656171 13656392 -130626097 + AluSx SINE Alu 1 233 -79 1512 169 4 4 chr12 13656573 13656845 -130625644 - AluSg SINE Alu -37 273 2 1822 98 48 41 chr12 13656878 13657173 -130625316 + AluSc SINE Alu 4 300 -9 438 206 0 0 chr12 13657226 13657294 -130625195 - Tigger7 DNA MER2_type 0 2487 2420 562 167 0 0 chr12 13657333 13657429 -130625060 + L1MB8 LINE L1 6077 6172 -6 417 231 103 51 chr12 13657445 13657640 -130624849 + L1ME3A LINE L1 5963 6167 -3 2178 110 0 0 chr12 13658024 13658323 -130624166 + AluSx SINE Alu 1 299 -13 1272 124 112 27 chr12 13658333 13658592 -130623897 + L1MB4 LINE L1 5894 6174 -6 895 133 17 69 chr12 13659066 13659239 -130623250 - MLT2C2 LTR ERVL 0 464 301 1696 179 3 3 chr12 13659244 13659552 -130622937 - AluJb SINE Alu -4 308 1 694 275 128 25 chr12 13659566 13660049 -130622440 - L1M4 LINE L1 -866 5280 4748 1833 133 3 23 chr12 13660051 13660353 -130622136 - AluJo SINE Alu -16 296 1 1828 116 67 0 chr12 13660380 13660665 -130621824 + AluSx SINE Alu 1 304 -8 311 226 21 0 chr12 13660746 13660826 -130621663 + AluJ/monomer SINE Alu 1 53 -249 213 121 0 0 chr12 13660875 13660908 -130621581 + (T)n Simple_repeat Simple_repeat 1 33 0 1948 141 0 0 chr12 13661217 13661514 -130620975 - AluSq SINE Alu -16 297 1 1962 109 0 0 chr12 13661655 13661922 -130620567 - AluSq SINE Alu -46 267 1 1783 157 0 17 chr12 13661922 13662221 -130620268 - AluJb SINE Alu -18 294 1 2029 137 0 3 chr12 13662620 13662926 -130619563 - AluSx SINE Alu -7 305 1 373 218 0 0 chr12 13663245 13663323 -130619166 - L1MCc LINE L1 -2554 4387 4310 1670 188 0 25 chr12 13663337 13663657 -130618832 - AluJo SINE Alu 0 312 1 1729 248 80 50 chr12 13663657 13663822 -130618667 - L1MCc LINE L1 -3167 3774 3615 1985 147 0 0 chr12 13663822 13664134 -130618355 + AluSx SINE Alu 1 312 0 1729 248 80 50 chr12 13664134 13664561 -130617928 - L1MCc LINE L1 -3326 3615 3202 2283 84 0 0 chr12 13664561 13664860 -130617629 + AluSg SINE Alu 1 299 -11 1729 248 80 50 chr12 13664860 13664907 -130617582 - L1MCc LINE L1 -3739 3202 3158 1868 168 3 0 chr12 13664907 13665210 -130617279 - AluSx SINE Alu -8 304 1 1729 248 80 50 chr12 13665210 13665369 -130617120 - L1MCc LINE L1 -3783 3158 2950 1256 176 0 9 chr12 13665373 13665595 -130616894 - AluJo SINE Alu -12 300 81 390 233 110 80 chr12 13665595 13665699 -130616790 - L1MCc LINE L1 -4130 2992 2893 2348 121 69 55 chr12 13665699 13665878 -130616611 + MSTA LTR MaLR 1 176 -252 2472 74 0 0 chr12 13665878 13666190 -130616299 + AluSx SINE Alu 1 312 0 2348 121 69 55 chr12 13666190 13666432 -130616057 + MSTA LTR MaLR 176 428 0 390 233 110 80 chr12 13666432 13666742 -130615747 - L1MCc LINE L1 -4229 2893 2594 1632 165 7 20 chr12 13666742 13667045 -130615444 + AluJo SINE Alu 1 299 -13 390 233 110 80 chr12 13667045 13667235 -130615254 - L1MCc LINE L1 -4528 2594 2343 2173 104 0 0 chr12 13667235 13667542 -130614947 + AluY SINE Alu 1 307 -4 390 233 110 80 chr12 13667542 13667597 -130614892 - L1MCc LINE L1 -4779 2343 2291 509 81 0 27 chr12 13667632 13667706 -130614783 - THE1B LTR MaLR 0 364 293 1023 76 0 0 chr12 13667706 13667837 -130614652 + AluY SINE Alu 1 131 -180 1008 130 37 0 chr12 13667844 13668006 -130614483 - THE1B LTR MaLR -58 306 139 1165 103 39 0 chr12 13668772 13668928 -130613561 - THE1B LTR MaLR -202 162 1 854 272 77 6 chr12 13668944 13669313 -130613176 - L1MCc LINE L1 -4840 2282 1678 1977 150 24 45 chr12 13669319 13669693 -130612796 + Tigger3b DNA MER2_type 1 366 -865 3997 106 41 26 chr12 13669693 13669729 -130612760 + Tigger3b DNA MER2_type 561 595 -2434 2054 129 10 3 chr12 13669729 13670039 -130612450 + AluSx SINE Alu 1 312 0 3997 106 41 26 chr12 13670039 13670229 -130612260 + Tigger3b DNA MER2_type 595 781 -2248 1934 124 11 0 chr12 13670229 13670544 -130611945 + AluSp SINE Alu 1 318 0 3997 106 41 26 chr12 13670544 13670975 -130611514 + Tigger3b DNA MER2_type 781 1230 -2 489 273 53 78 chr12 13670977 13671066 -130611423 - L1MCc LINE L1 -4889 1534 1444 2488 44 0 0 chr12 13671066 13671362 -130611127 - AluY SINE Alu -15 296 1 2181 106 0 3 chr12 13671369 13671671 -130610818 - AluSq SINE Alu -12 301 1 489 273 53 78 chr12 13671671 13671703 -130610786 - L1MCc LINE L1 -4985 1438 1407 2374 61 3 0 chr12 13671703 13671998 -130610491 - AluY SINE Alu -15 296 1 489 273 53 78 chr12 13671998 13672269 -130610220 - L1MCc LINE L1 -5016 1407 1272 772 198 48 210 chr12 13672537 13672870 -130609619 - L1MC4 LINE L1 -1134 6759 6396 222 250 0 97 chr12 13673612 13673684 -130608805 - L2 LINE L2 -2 3311 3247 2255 87 0 0 chr12 13673829 13674115 -130608374 + AluSg SINE Alu 1 286 -24 313 323 16 24 chr12 13674166 13674290 -130608199 + L2 LINE L2 33 155 -3159 1502 158 74 28 chr12 13674344 13674481 -130608008 + AluJb SINE Alu 1 130 -182 1942 117 3 3 chr12 13674481 13674799 -130607690 + AluSq SINE Alu 3 320 0 1502 158 74 28 chr12 13674799 13674945 -130607544 + AluJb SINE Alu 130 298 -14 186 43 0 0 chr12 13675142 13675165 -130607324 + (TA)n Simple_repeat Simple_repeat 2 24 0 196 350 51 51 chr12 13675181 13675298 -130607191 - L2 LINE L2 -18 3254 3138 2128 92 14 3 chr12 13675389 13675681 -130606808 - AluSg SINE Alu -15 295 1 21 0 0 0 chr12 13675714 13675735 -130606754 + AT_rich Low_complexity Low_complexity 1 21 0 2200 106 0 10 chr12 13675871 13676182 -130606307 - AluSx SINE Alu -2 310 3 600 228 55 0 chr12 13676265 13676431 -130606058 - L1ME1 LINE L1 -6 6160 6001 1302 187 15 89 chr12 13676457 13676650 -130605839 - AluJo SINE Alu 0 302 96 185 62 0 31 chr12 13676650 13676682 -130605807 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1875 145 0 0 chr12 13676682 13676965 -130605524 - AluJo SINE Alu -29 283 1 1302 187 15 89 chr12 13676965 13677096 -130605393 - AluJo SINE Alu -204 98 1 334 344 0 0 chr12 13677102 13677192 -130605297 - L1MC4 LINE L1 -1339 6703 6614 * 377 300 0 0 chr12 13677158 13677248 -130605241 + L1MC4 LINE L1 6614 6703 -1339 359 244 8 89 chr12 13677206 13677272 -130605217 - L1MC3 LINE L1 -1139 6646 6593 * 2108 88 0 14 chr12 13677272 13677555 -130604934 - AluSg SINE Alu -31 279 1 359 244 8 89 chr12 13677555 13677611 -130604878 - L1MC3 LINE L1 -1192 6593 6534 1321 83 78 29 chr12 13678457 13678661 -130603828 - AluSg/x SINE Alu -18 292 79 187 154 0 0 chr12 13678686 13678725 -130603764 + MIR SINE MIR 166 204 -58 269 203 0 17 chr12 13678726 13678785 -130603704 - Tigger5 DNA MER2_type -1 2322 2265 232 241 0 0 chr12 13678768 13678822 -130603667 - Tigger5 DNA MER2_type -2269 54 1 * 1692 152 30 10 chr12 13678906 13679203 -130603286 - AluJb SINE Alu 0 312 10 2315 57 0 0 chr12 13679382 13679687 -130602802 + AluY SINE Alu 1 305 0 627 263 98 24 chr12 13679935 13680140 -130602349 - MIR SINE MIR 0 262 43 2395 112 102 37 chr12 13680146 13680386 -130602103 - MSTA LTR MaLR 0 428 150 2155 112 0 0 chr12 13680386 13680689 -130601800 + AluSx SINE Alu 1 303 -9 2395 112 102 37 chr12 13680689 13680850 -130601639 - MSTA LTR MaLR -278 150 1 2383 53 7 3 chr12 13680867 13681168 -130601321 + AluY SINE Alu 1 302 -9 840 300 17 101 chr12 13681433 13681750 -130600739 + L2 LINE L2 2886 3161 -111 2724 3 0 0 chr12 13681750 13682052 -130600437 + AluYa8 SINE Alu 1 302 -8 840 300 17 101 chr12 13682052 13682151 -130600338 + L2 LINE L2 3161 3267 -5 25 31 0 0 chr12 13682552 13682584 -130599905 + AT_rich Low_complexity Low_complexity 1 32 0 1746 194 50 31 chr12 13682709 13682889 -130599600 + MLT1C LTR MaLR 1 176 -291 1760 118 0 0 chr12 13682889 13683135 -130599354 + AluSc SINE Alu 39 284 -25 189 0 0 0 chr12 13683135 13683156 -130599333 + (GA)n Simple_repeat Simple_repeat 2 22 0 1746 194 50 31 chr12 13683156 13683432 -130599057 + MLT1C LTR MaLR 175 467 0 1010 165 0 0 chr12 13683444 13683608 -130598881 - AluJb SINE Alu -14 298 135 2125 89 0 35 chr12 13684169 13684483 -130598006 - AluSx SINE Alu -9 303 1 1289 86 6 0 chr12 13684494 13684669 -130597820 + AluSq SINE Alu 130 305 -8 736 204 80 11 chr12 13684704 13684880 -130597609 + LTR41 LTR ERVL 1 188 -585 341 307 83 44 chr12 13685250 13685478 -130597011 + LTR41 LTR ERVL 508 744 -29 247 154 19 19 chr12 13685500 13685552 -130596937 + LTR33A LTR ERVL 472 523 0 279 291 13 0 chr12 13686015 13686094 -130596395 + MIR SINE MIR 164 243 -19 471 35 0 0 chr12 13686113 13686170 -130596319 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 288 295 116 0 chr12 13686173 13686268 -130596221 - L2 LINE L2 -22 3250 3145 2180 103 0 0 chr12 13686619 13686921 -130595568 - AluSq SINE Alu -10 303 2 2293 81 11 73 chr12 13686921 13687069 -130595420 - L1P4 LINE L1 -553 5612 5456 2137 84 7 10 chr12 13687069 13687367 -130595122 + AluSx SINE Alu 2 298 -14 2293 81 11 73 chr12 13687367 13687588 -130594901 - L1P4 LINE L1 -709 5456 5266 521 274 29 39 chr12 13687588 13687792 -130594697 - MLT1F LTR MaLR -338 204 3 357 243 35 69 chr12 13687806 13687950 -130594539 - L2 LINE L2 -207 3065 2927 * 492 267 61 14 chr12 13687946 13688131 -130594358 + MIR SINE MIR 18 212 -40 188 213 106 0 chr12 13688195 13688242 -130594247 + MIR SINE MIR 211 262 0 2071 92 61 0 chr12 13688322 13688616 -130593873 + AluSx SINE Alu 1 312 0 315 314 31 71 chr12 13688617 13688739 -130593750 - L2 LINE L2 -453 2861 2736 1789 148 3 0 chr12 13688739 13689029 -130593460 - AluJb SINE Alu -21 291 1 315 314 31 71 chr12 13689029 13689231 -130593258 - L2 LINE L2 -578 2736 2550 1854 130 41 0 chr12 13690243 13690535 -130591954 - AluSx SINE Alu -8 304 1 181 280 40 0 chr12 13690644 13690694 -130591795 - MIR SINE MIR -123 139 88 420 292 84 7 chr12 13690743 13690897 -130591592 - MIR SINE MIR -49 213 48 199 351 99 9 chr12 13690973 13691084 -130591405 + L2 LINE L2 3149 3269 -3 392 297 23 8 chr12 13691482 13691610 -130590879 + MIR SINE MIR 90 219 -43 2046 124 0 3 chr12 13691720 13692018 -130590471 - AluSx SINE Alu -15 297 1 2495 69 25 3 chr12 13692194 13692512 -130589977 + LTR8 LTR ERV1 1 325 -366 180 0 0 0 chr12 13693171 13693191 -130589298 + (A)n Simple_repeat Simple_repeat 1 20 0 2904 85 11 0 chr12 13693191 13693566 -130588923 + LTR8 LTR ERV1 313 691 0 2511 78 0 0 chr12 13693735 13694043 -130588446 + AluY SINE Alu 1 308 -3 217 250 87 54 chr12 13694077 13694169 -130588320 + L2 LINE L2 3201 3295 -18 369 247 59 0 chr12 13695182 13695267 -130587222 + MIR SINE MIR 99 188 -74 2230 124 0 0 chr12 13695496 13695803 -130586686 + AluSx SINE Alu 1 307 -5 186 203 116 58 chr12 13695856 13695925 -130586564 - L3 LINE CR1 -847 730 658 1064 211 59 30 chr12 13696064 13696221 -130586268 - AluJo SINE Alu -9 303 135 2338 89 0 13 chr12 13696221 13696534 -130585955 - AluSg SINE Alu -1 309 1 1064 211 59 30 chr12 13696534 13696613 -130585876 - AluJo SINE Alu -177 135 60 234 0 0 0 chr12 13696670 13696696 -130585793 + (TG)n Simple_repeat Simple_repeat 1 26 0 1319 201 28 92 chr12 13696712 13696936 -130585553 - MLT1A2 LTR MaLR 0 374 184 453 50 0 0 chr12 13696936 13696996 -130585493 + (GA)n Simple_repeat Simple_repeat 1 60 0 1319 201 28 92 chr12 13696996 13697163 -130585326 - MLT1A2 LTR MaLR -190 184 8 1297 88 10 62 chr12 13697298 13697514 -130584975 + AluSg/x SINE Alu 100 305 0 1936 114 0 94 chr12 13697524 13697866 -130584623 + AluJo SINE Alu 1 310 -2 365 318 85 39 chr12 13697935 13698064 -130584425 + MIR SINE MIR 5 140 -68 336 269 130 19 chr12 13698191 13698299 -130584190 - MIR SINE MIR -110 152 33 1463 143 64 57 chr12 13698989 13699109 -130583380 + AluJb SINE Alu 1 119 -193 2317 100 3 0 chr12 13699109 13699398 -130583091 + AluSp SINE Alu 1 290 -23 1463 143 64 57 chr12 13699398 13699557 -130582932 + AluJb SINE Alu 119 282 -30 2537 71 0 0 chr12 13700109 13700419 -130582070 + AluY SINE Alu 1 310 -1 2234 105 26 0 chr12 13700931 13701235 -130581254 + AluSx SINE Alu 1 312 0 1686 110 42 4 chr12 13701576 13701813 -130580676 + AluSx SINE Alu 51 296 -16 225 296 68 11 chr12 13701989 13702077 -130580412 - MIR SINE MIR -46 216 124 1076 201 108 24 chr12 13702871 13703159 -130579330 - MLT1C LTR MaLR -17 450 139 224 304 79 95 chr12 13703283 13703314 -130579175 + L2 LINE L2 2851 2881 -391 1632 170 49 10 chr12 13703314 13703602 -130578887 - AluJo SINE Alu -11 301 3 224 304 79 95 chr12 13703602 13703823 -130578666 + L2 LINE L2 2881 3099 -173 2494 70 0 16 chr12 13703868 13704184 -130578305 - AluY SINE Alu 0 311 1 2315 112 0 7 chr12 13704239 13704543 -130577946 - AluSq SINE Alu -11 302 1 195 283 50 0 chr12 13705403 13705463 -130577026 - MIR3 SINE MIR -139 69 7 535 204 277 0 chr12 13705666 13705803 -130576686 + MER96 DNA MER1_type 1 175 0 926 142 14 0 chr12 13705910 13706058 -130576431 + FAM SINE Alu 1 47 -2 1179 154 34 44 chr12 13706402 13706695 -130575794 + MER33 DNA MER1_type 4 293 -31 1343 184 139 4 chr12 13706695 13706961 -130575528 + AluJo SINE Alu 1 302 0 811 212 24 18 chr12 13706966 13707131 -130575358 + FRAM SINE Alu 1 166 0 225 315 55 0 chr12 13707191 13707264 -130575225 - MIR3 SINE MIR -49 159 83 205 262 16 0 chr12 13708493 13708554 -130573935 + CT-rich Low_complexity Low_complexity 1 62 0 2389 84 3 0 chr12 13709405 13709702 -130572787 - AluSp SINE Alu -15 298 1 180 238 167 12 chr12 13710144 13710228 -130572261 + MIR SINE MIR 37 133 -75 310 247 143 45 chr12 13710509 13710663 -130571826 - L1 LINE L1 -3279 2867 2699 513 219 138 109 chr12 13710710 13710770 -130571719 + MER58A DNA MER1_type 9 66 -2354 2126 79 11 29 chr12 13710770 13711086 -130571403 - AluSq SINE Alu 0 322 12 513 219 138 109 chr12 13711086 13711234 -130571255 + MER58A DNA MER1_type 66 224 0 536 251 12 176 chr12 13711330 13711447 -130571042 - L1 LINE L1 -3535 2611 2477 1864 182 0 0 chr12 13711447 13711744 -130570745 - AluJb SINE Alu -15 297 1 536 251 12 176 chr12 13711744 13711808 -130570681 - L1 LINE L1 -3669 2477 2404 2675 52 0 0 chr12 13711808 13712113 -130570376 - AluY SINE Alu -6 305 1 536 251 12 176 chr12 13712113 13712420 -130570069 - L1 LINE L1 -3742 2404 2202 186 320 120 20 chr12 13712544 13712644 -130569845 - L2 LINE L2 -865 2449 2340 2451 63 3 50 chr12 13712732 13713051 -130569438 + AluY SINE Alu 1 304 -7 1959 173 0 3 chr12 13713982 13714283 -130568206 + AluSx SINE Alu 3 302 -10 2107 132 0 3 chr12 13714642 13714945 -130567544 - AluSx SINE Alu -10 302 1 319 250 74 9 chr12 13715020 13715128 -130567361 + L2 LINE L2 2175 2289 -1025 555 240 147 5 chr12 13715132 13715286 -130567203 + MIR SINE MIR 17 217 -45 2009 136 16 13 chr12 13715286 13715594 -130566895 + AluJo SINE Alu 1 309 -3 555 240 147 5 chr12 13715594 13715627 -130566862 + MIR SINE MIR 217 244 -18 225 357 159 0 chr12 13715656 13715813 -130566676 + L2 LINE L2 2298 2479 -835 22 0 0 0 chr12 13715910 13715932 -130566557 + AT_rich Low_complexity Low_complexity 1 22 0 1775 149 6 43 chr12 13716051 13716374 -130566115 - AluJo SINE Alu -1 311 1 305 269 69 91 chr12 13716540 13716715 -130565774 + MIR SINE MIR 73 243 -19 314 266 129 48 chr12 13717374 13717498 -130564991 - MIR3 SINE MIR -16 192 59 279 314 0 0 chr12 13717554 13717624 -130564865 + polypyrimidine Low_complexity Low_complexity 5 74 0 2458 69 26 3 chr12 13717651 13717957 -130564532 + AluSp SINE Alu 1 313 0 300 296 126 37 chr12 13718578 13718713 -130563776 - L2 LINE L2 -2 3270 3124 189 0 0 0 chr12 13718798 13718819 -130563670 + (A)n Simple_repeat Simple_repeat 1 21 0 626 221 100 48 chr12 13719393 13719516 -130562973 + L1MC5 LINE L1 7586 7701 -260 1726 168 3 30 chr12 13719516 13719820 -130562669 + AluJo SINE Alu 1 296 -16 2418 94 3 0 chr12 13719821 13720130 -130562359 + AluSp SINE Alu 1 310 -3 626 221 100 48 chr12 13720130 13720294 -130562195 + L1MC5 LINE L1 7700 7890 -71 1715 177 0 35 chr12 13720305 13720622 -130561867 - AluJo SINE Alu -6 306 1 365 256 132 25 chr12 13721534 13721655 -130560834 + L2 LINE L2 3137 3270 -2 207 197 13 26 chr12 13721765 13721841 -130560648 + (TA)n Simple_repeat Simple_repeat 2 76 0 2326 91 17 0 chr12 13721920 13722216 -130560273 - AluSx SINE Alu -11 301 1 243 218 36 0 chr12 13723014 13723069 -130559420 + GA-rich Low_complexity Low_complexity 2 58 0 923 234 40 5 chr12 13723110 13723311 -130559178 + MIR SINE MIR 9 216 -46 1712 123 56 15 chr12 13723323 13723591 -130558898 + AluJb SINE Alu 1 279 -33 2263 83 16 22 chr12 13723808 13724120 -130558369 + AluSp SINE Alu 1 310 -3 1774 84 0 17 chr12 13724229 13724466 -130558023 + AluY SINE Alu 79 311 0 1760 177 18 0 chr12 13724685 13724962 -130557527 - AluJo SINE Alu -30 282 1 279 358 93 0 chr12 13726257 13726408 -130556081 - MIR3 SINE MIR -7 201 37 927 132 0 22 chr12 13726852 13726988 -130555501 + FLAM_C SINE Alu 1 133 0 2320 104 0 7 chr12 13727908 13728206 -130554283 - AluSg SINE Alu -14 296 1 2564 72 0 0 chr12 13728518 13728823 -130553666 - AluY SINE Alu -6 305 1 255 253 315 14 chr12 13728915 13729061 -130553428 - L2 LINE L2 0 3313 3124 922 201 0 0 chr12 13729857 13730021 -130552468 - AluJo SINE Alu -2 300 137 2126 122 0 14 chr12 13731551 13731955 -130550534 - AluSx SINE Alu 0 400 1 1309 128 21 0 chr12 13732053 13732240 -130550249 - AluJo SINE Alu -9 303 113 743 117 83 17 chr12 13732410 13732530 -130549959 - AluJo SINE Alu -183 129 2 243 88 0 0 chr12 13732643 13732677 -130549812 + (TCC)n Simple_repeat Simple_repeat 3 36 0 964 86 0 149 chr12 13732677 13732851 -130549638 - AluSg SINE Alu -162 148 1 438 69 0 0 chr12 13734248 13734306 -130548183 + (TG)n Simple_repeat Simple_repeat 1 58 0 209 309 36 82 chr12 13734376 13734486 -130548003 - MIR3 SINE MIR -15 193 89 207 293 0 40 chr12 13734599 13734674 -130547815 + CT-rich Low_complexity Low_complexity 2 73 0 28 0 0 0 chr12 13735101 13735129 -130547360 + AT_rich Low_complexity Low_complexity 1 28 0 1725 151 34 40 chr12 13735133 13735431 -130547058 - AluJb SINE Alu -16 296 1 1948 150 3 19 chr12 13735526 13735833 -130546656 - AluJo SINE Alu -6 306 5 2439 84 3 7 chr12 13736459 13736769 -130545720 - AluSp SINE Alu -4 309 1 1241 321 153 13 chr12 13736772 13737470 -130545019 + L3 LINE CR1 466 1261 -316 650 265 11 95 chr12 13737457 13737509 -130544980 - MIR SINE MIR -4 258 203 * 2368 74 3 0 chr12 13737509 13737828 -130544661 - AluSq SINE Alu 0 320 1 650 265 11 95 chr12 13737828 13737886 -130544603 - MIR SINE MIR -59 203 142 2510 54 3 3 chr12 13737886 13738180 -130544309 - AluSp SINE Alu -19 294 1 650 265 11 95 chr12 13738180 13738331 -130544158 - MIR SINE MIR -120 142 17 318 67 0 0 chr12 13739170 13739215 -130543274 + (A)n Simple_repeat Simple_repeat 1 45 0 2339 99 0 16 chr12 13739603 13739915 -130542574 + AluSg SINE Alu 1 307 -3 496 147 0 0 chr12 13740367 13740434 -130542055 + (TCCC)n Simple_repeat Simple_repeat 2 71 -5 2312 97 7 0 chr12 13740434 13740742 -130541747 - AluY SINE Alu -1 310 1 496 147 0 0 chr12 13740742 13740749 -130541740 + (TCCC)n Simple_repeat Simple_repeat 70 76 0 1167 83 0 17 chr12 13740757 13740844 -130541645 + (TTCC)n Simple_repeat Simple_repeat 1 263 0 1167 83 0 17 chr12 13740844 13741025 -130541464 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1048 181 9 62 chr12 13741111 13741321 -130541168 - AluJo SINE Alu -113 199 1 731 172 0 0 chr12 13741713 13741835 -130540654 - FLAM_A SINE Alu -1 141 20 2040 107 43 17 chr12 13741857 13742157 -130540332 - AluSg SINE Alu -2 308 1 392 241 89 9 chr12 13742225 13742337 -130540152 + L2 LINE L2 3158 3278 -35 2096 125 26 10 chr12 13742850 13743153 -130539336 - AluSq SINE Alu -3 310 3 464 284 49 19 chr12 13743603 13743765 -130538724 - MER5A DNA MER1_type 0 189 23 2341 137 20 29 chr12 13744202 13744611 -130537878 + MER50 LTR ERV1 1 405 -329 265 74 19 74 chr12 13744635 13744689 -130537800 + MER50 LTR ERV1 355 405 -329 1730 115 18 25 chr12 13744713 13744992 -130537497 + MER50 LTR ERV1 355 631 -103 316 123 41 27 chr12 13744995 13745068 -130537421 + MER96B DNA MER1_type? 103 176 -241 267 152 0 0 chr12 13745210 13745256 -130537233 + (TA)n Simple_repeat Simple_repeat 2 47 0 315 311 0 0 chr12 13745260 13745350 -130537139 + L1MC4 LINE L1 6614 6703 -1339 309 279 35 0 chr12 13745327 13745413 -130537076 - L1MC4 LINE L1 -1340 6702 6614 * 472 149 21 0 chr12 13745416 13745510 -130536979 + (TA)n Simple_repeat Simple_repeat 1 96 0 225 200 21 53 chr12 13745510 13745605 -130536884 + L1MC4 LINE L1 6612 6703 -1339 267 130 0 0 chr12 13745607 13745653 -130536836 - L1MC4 LINE L1 -1339 6703 6658 858 225 0 0 chr12 13745709 13745869 -130536620 - AluJ SINE Alu -22 290 131 1881 154 3 3 chr12 13745889 13746174 -130536315 - AluJo SINE Alu -27 285 1 847 130 23 8 chr12 13746195 13746326 -130536163 - AluJ SINE Alu -169 133 1 288 0 0 0 chr12 13746380 13746412 -130536077 + (TA)n Simple_repeat Simple_repeat 1 32 0 2164 128 0 7 chr12 13746413 13746717 -130535772 - AluSx SINE Alu -10 302 1 242 211 0 19 chr12 13746816 13746868 -130535621 + MER96B DNA MER1_type? 193 243 -174 287 318 54 16 chr12 13747115 13747244 -130535245 + MER91A DNA MER1_type 28 161 -35 382 286 0 9 chr12 13747448 13747553 -130534936 - MER5C DNA MER1_type -212 112 9 852 288 125 14 chr12 13747830 13748198 -130534291 - MLT1I LTR MaLR 0 409 1 23 0 0 0 chr12 13748500 13748523 -130533966 + AT_rich Low_complexity Low_complexity 1 23 0 315 85 0 0 chr12 13748523 13748570 -130533919 + (TG)n Simple_repeat Simple_repeat 2 48 0 2063 101 36 26 chr12 13748844 13749152 -130533337 - AluSq SINE Alu -2 311 1 2255 113 0 3 chr12 13749254 13749554 -130532935 - AluSg SINE Alu -11 299 1 1730 158 28 14 chr12 13749783 13750068 -130532421 + AluJo SINE Alu 1 289 -23 2403 63 3 0 chr12 13750396 13750683 -130531806 + AluY SINE Alu 15 302 -9 3853 156 21 8 chr12 13750825 13751487 -130531002 - LTR51 LTR ERV1 0 671 1 239 268 205 9 chr12 13751529 13751641 -130530848 + MARNA DNA Mariner 400 533 -53 2109 130 58 14 chr12 13751659 13752021 -130530468 - MER83B LTR ERV1 0 378 1 258 158 0 0 chr12 13752642 13752680 -130529809 - tRNA-Ile-ATT tRNA tRNA -38 39 2 23 0 0 0 chr12 13752699 13752722 -130529767 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 13752811 13752835 -130529654 + AT_rich Low_complexity Low_complexity 1 24 0 914 127 0 0 chr12 13752893 13753011 -130529478 + AluJb SINE Alu 1 118 -194 2232 113 3 7 chr12 13753011 13753320 -130529169 - AluSx SINE Alu -4 308 1 751 163 57 0 chr12 13753425 13753566 -130528923 - FRAM SINE Alu 0 176 28 1546 136 147 0 chr12 13753696 13753947 -130528542 + AluJo SINE Alu 3 290 -12 31 0 0 0 chr12 13753955 13753986 -130528503 + AT_rich Low_complexity Low_complexity 1 31 0 2423 64 0 0 chr12 13754428 13754733 -130527756 + AluSc SINE Alu 1 305 0 2256 95 0 49 chr12 13755327 13755652 -130526837 + AluSx SINE Alu 1 309 -3 325 295 0 19 chr12 13755663 13755768 -130526721 + MIR3 SINE MIR 14 116 -92 217 250 0 0 chr12 13755877 13755925 -130526564 + L2 LINE L2 3214 3261 -11 317 309 145 0 chr12 13756112 13756264 -130526225 + MIR3 SINE MIR 8 181 -27 4035 128 45 25 chr12 13756720 13757429 -130525060 + L1MB2 LINE L1 5448 6170 -1 2093 137 3 0 chr12 13757953 13758246 -130524243 - AluSx SINE Alu -18 294 1 2257 87 0 0 chr12 13759488 13759763 -130522726 + AluSx SINE Alu 1 275 -37 531 176 44 0 chr12 13760036 13760127 -130522362 - AluJ/FLAM SINE Alu -212 100 6 268 313 15 0 chr12 13760216 13760283 -130522206 + L2 LINE L2 3123 3190 -82 401 253 94 74 chr12 13760372 13760574 -130521915 + MIR SINE MIR 17 222 -40 21 0 0 0 chr12 13760660 13760681 -130521808 + AT_rich Low_complexity Low_complexity 1 21 0 725 186 16 16 chr12 13761190 13761319 -130521170 - AluJo SINE Alu -63 249 121 1148 103 0 6 chr12 13761771 13761946 -130520543 + (TTCC)n Simple_repeat Simple_repeat 1 174 0 352 181 24 0 chr12 13761947 13762030 -130520459 + T-rich Low_complexity Low_complexity 5 89 0 1973 135 23 3 chr12 13762037 13762340 -130520149 - AluSq SINE Alu -4 309 1 310 310 150 9 chr12 13763102 13763315 -130519174 - L3b LINE CR1 -127 1456 1214 1078 121 0 11 chr12 13763328 13763510 -130518979 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2072 121 0 0 chr12 13763510 13763790 -130518699 - AluSx SINE Alu -32 280 1 236 286 33 0 chr12 13764043 13764134 -130518355 - L3b LINE CR1 -381 1202 1109 374 98 0 16 chr12 13764536 13764597 -130517892 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1877 138 27 14 chr12 13764597 13764893 -130517596 - AluJb SINE Alu -12 300 1 395 74 0 0 chr12 13767506 13767560 -130514929 - MADE1 DNA Mariner 0 80 27 2272 112 0 0 chr12 13767560 13767855 -130514634 + AluSx SINE Alu 1 295 -17 2206 115 0 26 chr12 13767858 13768170 -130514319 + AluSx SINE Alu 1 304 -8 257 139 0 0 chr12 13768182 13768225 -130514264 - MADE1 DNA Mariner -37 43 1 2264 96 34 3 chr12 13769596 13769889 -130512600 - AluSg SINE Alu -8 302 1 2339 96 0 3 chr12 13770208 13770510 -130511979 - AluSx SINE Alu -11 301 1 223 224 69 0 chr12 13772038 13772096 -130510393 - L3 LINE CR1 -7 1570 1509 1318 275 9 15 chr12 13772469 13772800 -130509689 + MER45C DNA AcHobo 1 329 -624 1072 82 11 22 chr12 13772893 13772931 -130509558 + (TTTC)n Simple_repeat Simple_repeat 1 217 0 1072 82 11 22 chr12 13772931 13773113 -130509376 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 895 112 12 18 chr12 13773157 13773326 -130509163 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 978 86 29 11 chr12 13773327 13773391 -130509098 + (TTTC)n Simple_repeat Simple_repeat 1 242 0 978 86 29 11 chr12 13773391 13773565 -130508924 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 2197 134 0 0 chr12 13773588 13773886 -130508603 - AluSx SINE Alu -14 298 1 2039 130 3 0 chr12 13774516 13774800 -130507689 + AluJb SINE Alu 1 285 -27 22 35 0 0 chr12 13774954 13774983 -130507506 + AT_rich Low_complexity Low_complexity 1 29 0 2094 112 3 17 chr12 13775476 13775788 -130506701 - AluSq SINE Alu 0 308 1 4103 102 2 3 chr12 13775873 13776454 -130506035 - L1PA14 LINE L1 -4 6157 5578 703 130 0 9 chr12 13776856 13776971 -130505518 - FRAM SINE Alu -1 175 62 29 0 0 0 chr12 13777008 13777037 -130505452 + AT_rich Low_complexity Low_complexity 1 29 0 1362 124 0 0 chr12 13777037 13777215 -130505274 + AluSg SINE Alu 1 178 -132 474 33 16 0 chr12 13777215 13777276 -130505213 + AluSc SINE Alu 228 289 -20 2054 138 7 16 chr12 13777281 13777586 -130504903 + AluSx SINE Alu 1 302 -10 663 198 33 0 chr12 13777586 13777707 -130504782 - AluJo/FLAM SINE Alu -187 125 1 1246 246 40 57 chr12 13777765 13778119 -130504370 + MLT1H1 LTR MaLR 12 359 -196 443 176 6 139 chr12 13778143 13778308 -130504181 - LTR37A LTR ERV1 -231 195 53 1726 157 50 13 chr12 13778626 13778926 -130503563 - AluJb SINE Alu -1 311 1 313 173 53 90 chr12 13779303 13779436 -130503053 - MER112 DNA MER1_type -123 137 10 2380 89 0 13 chr12 13779436 13779740 -130502749 + AluSp SINE Alu 1 300 -13 2267 125 0 0 chr12 13780023 13780335 -130502154 - AluSx SINE Alu 0 312 1 225 301 24 0 chr12 13780493 13780576 -130501913 - L2 LINE L2 -1 3312 3228 784 333 85 30 chr12 13780990 13781751 -130500738 - L2 LINE L2 0 3313 2518 1438 264 92 52 chr12 13781801 13782720 -130499769 + L2 LINE L2 2372 3312 -1 282 275 52 52 chr12 13783128 13783321 -130499168 - L2 LINE L2 -850 2464 2272 1915 127 3 37 chr12 13783793 13784092 -130498397 + AluSx SINE Alu 1 289 -23 519 258 46 55 chr12 13785642 13785859 -130496630 + MIR SINE MIR 46 260 -2 2430 88 0 7 chr12 13786217 13786522 -130495967 + AluSx SINE Alu 1 303 -9 1908 149 7 0 chr12 13787176 13787491 -130494998 - AluSx SINE Alu 0 317 1 2370 103 6 3 chr12 13788063 13788374 -130494115 + AluSx SINE Alu 1 312 0 454 232 17 122 chr12 13788573 13788811 -130493678 + MLT1L LTR MaLR 98 392 -202 274 202 96 75 chr12 13788833 13788927 -130493562 + MLT1L LTR MaLR 386 586 -29 308 333 0 0 chr12 13788956 13789043 -130493446 - L2 LINE L2 -49 3223 3137 189 0 0 0 chr12 13789043 13789064 -130493425 + (A)n Simple_repeat Simple_repeat 1 21 0 597 292 155 29 chr12 13789203 13789703 -130492786 - L2 LINE L2 -181 3132 2560 291 376 75 0 chr12 13789785 13790051 -130492438 + L2 LINE L2 2033 2318 -996 1342 245 47 71 chr12 13790080 13790570 -130491919 - MER34 LTR ERV1 -61 481 4 444 319 130 17 chr12 13790578 13790879 -130491610 + L2 LINE L2 2470 2804 -510 296 296 78 0 chr12 13790938 13791053 -130491436 + MIR SINE MIR 118 241 -21 283 225 32 5 chr12 13792666 13792790 -130489699 + MIR SINE MIR 102 230 -32 279 82 61 0 chr12 13793084 13793133 -130489356 + Alu SINE Alu 251 302 0 214 284 124 41 chr12 13793772 13793941 -130488548 + L3b LINE CR1 1230 1412 -171 525 322 35 26 chr12 13794150 13794377 -130488112 + MIR SINE MIR 34 262 0 1003 195 6 0 chr12 13794464 13794638 -130487851 + FAM SINE Alu 1 175 0 516 231 18 106 chr12 13794684 13794957 -130487532 + L2 LINE L2 3022 3270 -43 225 279 50 91 chr12 13795112 13795235 -130487254 - L2 LINE L2 -455 2859 2747 2404 92 26 0 chr12 13795235 13795538 -130486951 - AluSx SINE Alu -1 311 1 225 279 50 91 chr12 13795538 13795633 -130486856 - L2 LINE L2 -567 2747 2650 215 252 47 84 chr12 13798693 13798800 -130483689 + L2 LINE L2 3211 3313 0 872 151 0 0 chr12 13799025 13799151 -130483338 - FLAM_C SINE Alu -10 133 8 499 271 61 11 chr12 13799194 13799375 -130483114 - L2 LINE L2 -86 3227 3038 400 296 0 0 chr12 13799713 13799811 -130482678 - MIR SINE MIR -118 144 47 570 284 56 0 chr12 13799905 13800102 -130482387 - MIR SINE MIR -8 254 47 2342 208 31 81 chr12 13800832 13801576 -130480913 + L1MC5 LINE L1 6712 7418 -543 1046 168 0 12 chr12 13801677 13801850 -130480639 + FRAM SINE Alu 1 167 -9 726 230 77 55 chr12 13801860 13801905 -130480584 + L1MC5 LINE L1 7549 7592 -369 2130 103 14 7 chr12 13801905 13802196 -130480293 + AluSg SINE Alu 1 293 -17 726 230 77 55 chr12 13802196 13802529 -130479960 + L1MC5 LINE L1 7592 7935 -26 286 274 53 11 chr12 13802816 13802911 -130479578 - MIR SINE MIR -111 151 53 539 167 149 0 chr12 13802990 13803104 -130479385 - MER96 DNA MER1_type? -33 142 12 326 201 77 0 chr12 13804542 13804614 -130477875 + L1ME LINE L1 5527 5595 -526 408 40 0 0 chr12 13804620 13804670 -130477819 + (TC)n Simple_repeat Simple_repeat 1 50 0 1935 136 10 27 chr12 13804670 13804971 -130477518 - AluSx SINE Alu -16 296 1 465 90 0 0 chr12 13805463 13805530 -130476959 - MER41A LTR ERV1 -93 461 395 705 168 87 34 chr12 13806656 13806864 -130475625 + HAL1 LINE L1 974 1192 -1315 1344 197 44 47 chr12 13806952 13807152 -130475337 + MER2 DNA MER2_type 7 206 -139 381 22 0 0 chr12 13807152 13807198 -130475291 + (CA)n Simple_repeat Simple_repeat 1 46 0 1518 158 34 50 chr12 13807202 13807500 -130474989 - AluJo SINE Alu -8 304 12 3304 166 15 75 chr12 13807503 13808238 -130474251 + LTR8 LTR ERV1 1 691 0 1344 197 44 47 chr12 13808238 13808368 -130474121 + MER2 DNA MER2_type 211 345 0 231 299 87 39 chr12 13808687 13808814 -130473675 + MER112 DNA MER1_type 23 155 -105 2091 138 0 0 chr12 13809243 13809539 -130472950 - AluSx SINE Alu -16 296 1 345 373 56 0 chr12 13809869 13810030 -130472459 - MIR3 SINE MIR -8 200 31 264 194 32 0 chr12 13810095 13810157 -130472332 + CT-rich Low_complexity Low_complexity 2 65 0 345 140 0 0 chr12 13810160 13810217 -130472272 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 1361 172 18 72 chr12 13810217 13810496 -130471993 - AluJb SINE Alu -14 298 35 239 143 0 0 chr12 13810504 13810522 -130471967 - Alu SINE Alu 0 133 116 294 29 0 0 chr12 13810522 13810557 -130471932 + (TC)n Simple_repeat Simple_repeat 1 35 0 239 143 0 0 chr12 13810557 13810587 -130471902 - Alu SINE Alu -16 117 85 252 306 0 0 chr12 13810771 13810833 -130471656 - L2 LINE L2 -1 3271 3210 237 263 25 12 chr12 13811717 13811797 -130470692 - MIR3 SINE MIR -6 202 122 * 311 324 29 0 chr12 13811795 13811931 -130470558 - L2 LINE L2 -1010 2304 2165 536 304 146 27 chr12 13812076 13812445 -130470044 + L2 LINE L2 2888 3300 -13 674 301 41 0 chr12 13813107 13813326 -130469163 - MIR SINE MIR -1 261 34 235 215 15 46 chr12 13813740 13813805 -130468684 - MIR SINE MIR -109 153 91 214 289 149 0 chr12 13813883 13814004 -130468485 - MIR SINE MIR -66 196 58 812 260 151 43 chr12 13814294 13814759 -130467730 - LTR33A LTR ERVL 0 523 9 630 236 109 26 chr12 13815126 13815355 -130467134 + L2 LINE L2 3058 3305 -8 553 231 95 107 chr12 13815356 13815599 -130466890 + MER102a DNA MER1_type 91 330 0 2413 164 87 8 chr12 13816179 13816660 -130465829 - MER44D DNA MER2_type 0 605 32 278 211 68 27 chr12 13817189 13817336 -130465153 + (CGG)n Simple_repeat Simple_repeat 2 154 0 273 172 31 115 chr12 13817271 13817463 -130465026 + (CGGGG)n Simple_repeat Simple_repeat 2 177 0 * 2179 121 0 13 chr12 13820938 13821245 -130461244 - AluSx SINE Alu -9 303 1 299 278 52 19 chr12 13821836 13821968 -130460521 - MIR SINE MIR -70 138 5 1776 163 42 0 chr12 13822168 13822456 -130460033 - AluJb SINE Alu -12 300 1 1499 176 31 10 chr12 13822458 13822747 -130459742 - AluJo SINE Alu -17 295 1 728 200 47 24 chr12 13823052 13823222 -130459267 - MER104 DNA Tc2 -1 179 6 267 229 46 120 chr12 13823513 13823591 -130458898 + MIR SINE MIR 50 109 -153 907 118 0 22 chr12 13823591 13823727 -130458762 - FLAM_C SINE Alu 0 133 1 267 229 46 120 chr12 13823727 13823823 -130458666 + MIR SINE MIR 109 211 -51 2056 84 45 74 chr12 13823958 13824269 -130458220 - AluSx SINE Alu -10 302 1 1943 106 48 7 chr12 13824364 13824657 -130457832 + MER4D LTR ERV1 1 305 -598 2186 128 0 10 chr12 13824660 13824973 -130457516 + AluSx SINE Alu 2 311 -1 2362 91 3 3 chr12 13825499 13825807 -130456682 - AluSg SINE Alu -2 308 1 4605 139 29 85 chr12 13825841 13826869 -130455620 - L1MA6 LINE L1 0 6300 5216 2308 101 3 0 chr12 13826869 13827166 -130455323 - AluSx SINE Alu -14 298 1 2116 125 10 13 chr12 13827176 13827489 -130455000 - AluSx SINE Alu 0 312 1 4605 139 29 85 chr12 13827489 13827703 -130454786 - L1MA6 LINE L1 -1093 5207 5108 28 29 0 0 chr12 13827957 13827992 -130454497 + AT_rich Low_complexity Low_complexity 1 35 0 846 271 156 19 chr12 13828006 13828416 -130454073 - L2 LINE L2 -4 3309 2844 * 962 206 78 0 chr12 13828407 13828625 -130453864 + MIR SINE MIR 16 250 -12 1210 238 55 46 chr12 13828625 13829041 -130453448 + L1MC4 LINE L1 7480 7899 -143 760 309 148 25 chr12 13829071 13829504 -130452985 + L2 LINE L2 2825 3310 -3 201 152 0 0 chr12 13829504 13829537 -130452952 + (GGATG)n Simple_repeat Simple_repeat 3 35 0 1782 126 87 4 chr12 13829823 13830100 -130452389 - AluSq SINE Alu -13 300 1 234 228 208 17 chr12 13830391 13830524 -130451965 + MER5A DNA MER1_type 1 141 -37 2134 123 10 3 chr12 13830651 13830952 -130451537 - AluSx SINE Alu -9 303 1 968 289 59 30 chr12 13830971 13831411 -130451078 - L1MC4a LINE L1 -1799 6289 5837 * 2044 245 66 0 chr12 13831408 13832012 -130450477 - L1MC4a LINE L1 -2591 3835 3192 23 0 0 0 chr12 13832241 13832264 -130450225 + AT_rich Low_complexity Low_complexity 1 23 0 2336 90 0 10 chr12 13832315 13832616 -130449873 - AluSx SINE Alu -14 298 1 2265 210 120 39 chr12 13832700 13833428 -130449061 - L1MCa LINE L1 -3215 3211 2375 1904 148 3 32 chr12 13833428 13833738 -130448751 - AluJb SINE Alu -11 301 1 2265 210 120 39 chr12 13833738 13834002 -130448487 - L1MCa LINE L1 -4051 2375 2134 355 306 91 19 chr12 13834163 13834372 -130448117 - L1M4 LINE L1 -3668 2478 2255 2118 153 79 29 chr12 13834994 13835438 -130447051 - MLT1C LTR MaLR -1 466 1 331 329 82 14 chr12 13835528 13835674 -130446815 - HAL1b LINE L1 -437 911 756 2319 112 0 0 chr12 13836026 13836331 -130446158 - AluSx SINE Alu -7 305 1 2323 229 66 22 chr12 13837004 13837550 -130444939 + MLT1G LTR MaLR 19 588 -2 756 310 49 4 chr12 13837632 13837877 -130444612 + MLT2F LTR ERVL 6 261 -402 2424 53 0 0 chr12 13837959 13838288 -130444201 + AluY SINE Alu 1 311 0 253 206 44 29 chr12 13838656 13838724 -130443765 + MLT2F LTR ERVL 275 343 -320 1723 320 55 14 chr12 13839049 13839793 -130442696 - HERV16 LTR ERVL -2625 2371 1658 368 406 0 0 chr12 13839791 13839951 -130442538 - HERV16 LTR ERVL -3464 1532 1373 * 1998 132 42 73 chr12 13840303 13840729 -130441760 - L1MA8 LINE L1 -91 6200 5788 551 305 79 32 chr12 13840752 13841067 -130441422 - LTR16C LTR ERVL -4 487 158 781 241 105 96 chr12 13841084 13841604 -130440885 - L1MC5 LINE L1 -817 6991 6477 1930 131 144 25 chr12 13841604 13841964 -130440525 - MER57A LTR ERV1 0 403 1 781 241 105 96 chr12 13841964 13842456 -130440033 - L1MC5 LINE L1 -1331 6477 5985 905 213 0 18 chr12 13842456 13842625 -130439864 - FRAM SINE Alu 0 166 1 781 241 105 96 chr12 13842625 13842833 -130439656 - L1MC5 LINE L1 -1823 5985 5780 794 254 24 10 chr12 13842887 13843092 -130439397 - L2 LINE L2 -879 2435 2228 234 226 0 0 chr12 13844292 13844345 -130438144 - L1ME4a LINE L1 -100 6021 5969 26 0 0 0 chr12 13844525 13844551 -130437938 + AT_rich Low_complexity Low_complexity 1 26 0 696 169 32 0 chr12 13844593 13844769 -130437720 + AluJb SINE Alu 156 335 0 22 35 0 0 chr12 13844786 13844815 -130437674 + AT_rich Low_complexity Low_complexity 1 29 0 1148 176 14 32 chr12 13845617 13845833 -130436656 - AluJo SINE Alu -15 297 86 207 347 0 10 chr12 13845896 13845994 -130436495 + L3 LINE CR1 1251 1347 -230 210 259 0 0 chr12 13846114 13846172 -130436317 + L3b LINE CR1 1526 1583 0 2276 266 79 71 chr12 13848679 13849627 -130432862 + L2 LINE L2 1927 2904 -409 2078 132 0 25 chr12 13849627 13849946 -130432543 + AluSq SINE Alu 1 311 -2 2276 266 79 71 chr12 13849946 13850358 -130432131 + L2 LINE L2 2904 3311 -2 1867 134 39 23 chr12 13850358 13850664 -130431825 - AluSx SINE Alu -1 311 1 1085 163 0 11 chr12 13851414 13851592 -130430897 + AluJb SINE Alu 137 312 0 2443 95 0 0 chr12 13851772 13852078 -130430411 + AluY SINE Alu 1 306 -5 2153 139 3 0 chr12 13852207 13852517 -130429972 - AluSx SINE Alu -1 311 1 1724 152 42 7 chr12 13852519 13852802 -130429687 - AluJo SINE Alu -11 301 9 253 258 0 0 chr12 13853295 13853357 -130429132 + L2 LINE L2 2628 2689 -625 2291 101 13 3 chr12 13853489 13853795 -130428694 - AluSx SINE Alu -3 309 1 272 324 76 38 chr12 13853844 13854106 -130428383 + L2 LINE L2 2982 3253 -60 2144 103 4 0 chr12 13854221 13854522 -130427967 - AluSq SINE Alu 0 302 1 1756 166 3 7 chr12 13854816 13855127 -130427362 + AluJb SINE Alu 1 310 0 500 292 65 0 chr12 13855820 13856005 -130426484 + MER117 DNA MER1_type 1 197 0 21 0 0 0 chr12 13856308 13856329 -130426160 + GC_rich Low_complexity Low_complexity 1 21 0 685 247 93 14 chr12 13857386 13857765 -130424724 + MLT1J2 LTR MaLR 1 441 -9 192 40 0 0 chr12 13859006 13859031 -130423458 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 764 224 0 7 chr12 13859031 13859178 -130423311 - FRAM SINE Alu -19 147 2 795 231 32 42 chr12 13859743 13859959 -130422530 - MIR SINE MIR -28 234 21 330 293 19 19 chr12 13860112 13860218 -130422271 + MIR3 SINE MIR 85 190 -18 458 330 87 0 chr12 13860937 13861143 -130421346 - MIR SINE MIR -15 247 24 244 237 35 0 chr12 13861185 13861267 -130421222 - MIR SINE MIR -60 148 95 279 275 47 47 chr12 13861964 13862113 -130420376 - MIR3 SINE MIR -59 149 1 183 80 0 0 chr12 13862246 13862271 -130420218 + (T)n Simple_repeat Simple_repeat 1 25 0 825 0 0 0 chr12 13863187 13863277 -130419212 + 5S rRNA rRNA 1 90 -31 2276 79 7 0 chr12 13863474 13863794 -130418695 - AluSp SINE Alu 0 322 1 275 202 180 10 chr12 13863838 13863939 -130418550 + MIR SINE MIR 12 144 -64 206 92 46 46 chr12 13864476 13864541 -130417948 + (TATAG)n Simple_repeat Simple_repeat 2 66 0 731 242 47 94 chr12 13865165 13865652 -130416837 - HAL1b LINE L1 -796 552 89 492 228 53 92 chr12 13865693 13865760 -130416729 + MIR SINE MIR 24 92 -170 2215 128 36 28 chr12 13865760 13866120 -130416369 - THE1B LTR MaLR 0 364 2 492 228 53 92 chr12 13866120 13866224 -130416265 + MIR SINE MIR 92 188 -74 2073 134 0 0 chr12 13866224 13866515 -130415974 - AluSx SINE Alu -21 291 1 492 228 53 92 chr12 13866515 13866548 -130415941 + MIR SINE MIR 188 221 -41 532 139 0 12 chr12 13867155 13867241 -130415248 + LTR41 LTR ERVL 3 87 -686 358 223 0 58 chr12 13867287 13867408 -130415081 + LTR41 LTR ERVL 655 768 -5 798 223 92 26 chr12 13867616 13867757 -130414732 + MIR SINE MIR 3 166 -96 189 0 0 0 chr12 13867757 13867778 -130414711 + (TAA)n Simple_repeat Simple_repeat 3 23 0 798 223 92 26 chr12 13867778 13867865 -130414624 + MIR SINE MIR 166 246 -16 760 311 109 20 chr12 13868425 13868827 -130413662 + L3 LINE CR1 789 1226 -351 497 325 66 4 chr12 13868881 13869124 -130413365 - MIR SINE MIR 0 262 5 181 265 0 0 chr12 13869132 13869181 -130413308 + L3 LINE CR1 1239 1287 -290 21 0 0 0 chr12 13869458 13869479 -130413010 + AT_rich Low_complexity Low_complexity 1 21 0 2150 151 52 0 chr12 13869481 13869865 -130412624 - L1MB2 LINE L1 -2 6169 5766 22 56 0 0 chr12 13870316 13870352 -130412137 + AT_rich Low_complexity Low_complexity 1 36 0 4796 158 65 46 chr12 13870401 13871452 -130411037 - MER11C LTR ERVK 0 1071 1 23 0 0 0 chr12 13873391 13873414 -130409075 + AT_rich Low_complexity Low_complexity 1 23 0 1167 246 11 71 chr12 13873953 13874014 -130408475 - L1ME3A LINE L1 -218 5952 5889 2130 130 0 0 chr12 13874014 13874313 -130408176 - AluSx SINE Alu -13 299 1 1167 246 11 71 chr12 13874313 13874703 -130407786 - L1ME3A LINE L1 -281 5889 5528 2619 198 101 30 chr12 13874745 13875411 -130407078 - L1MDa LINE L1 -5826 714 2 185 197 203 6 chr12 13875769 13875862 -130406627 - MIR SINE MIR -9 199 83 882 258 131 36 chr12 13876020 13876493 -130405996 + LTR33 LTR ERVL 4 521 0 802 264 40 12 chr12 13877021 13877271 -130405218 - MIR SINE MIR -4 258 2 479 321 47 11 chr12 13880227 13880417 -130402072 + MIR SINE MIR 28 224 -38 1515 314 187 8 chr12 13881986 13882943 -130399546 - L3 LINE CR1 -21 1556 429 1154 246 5 0 chr12 13883004 13883224 -130399265 + MER58A DNA MER1_type 3 223 -1 23 0 0 0 chr12 13884732 13884755 -130397734 + AT_rich Low_complexity Low_complexity 1 23 0 193 325 0 24 chr12 13886461 13886544 -130395945 - L2 LINE L2 -8 3264 3184 542 272 52 26 chr12 13886997 13887188 -130395301 + MIR SINE MIR 1 196 -66 351 0 0 0 chr12 13887208 13887247 -130395242 + (TA)n Simple_repeat Simple_repeat 2 40 0 222 202 71 36 chr12 13887956 13888040 -130394449 + MIR3 SINE MIR 97 183 -25 190 219 0 94 chr12 13889073 13889137 -130393352 - L2 LINE L2 -12 3260 3203 217 343 0 0 chr12 13889338 13889408 -130393081 + MIR SINE MIR 45 114 -94 3195 90 26 2 chr12 13889426 13889485 -130393004 - HSMAR2 DNA Mariner -1 1301 1245 2297 113 0 0 chr12 13889485 13889786 -130392703 + AluSg SINE Alu 1 301 -9 3195 90 26 2 chr12 13889786 13890182 -130392307 - HSMAR2 DNA Mariner -57 1245 835 785 157 0 8 chr12 13890196 13890330 -130392159 - FLAM_C SINE Alu 0 133 1 5356 128 7 8 chr12 13890453 13891274 -130391215 - HSMAR2 DNA Mariner -481 821 2 2107 106 6 61 chr12 13892461 13892791 -130389698 - AluSx SINE Alu 0 312 1 341 221 78 0 chr12 13893451 13893528 -130388961 - L2 LINE L2 -3 3269 3187 275 198 116 0 chr12 13893655 13893741 -130388748 - L1ME4a LINE L1 -37 6084 5989 22 35 0 0 chr12 13894279 13894308 -130388181 + AT_rich Low_complexity Low_complexity 1 29 0 7882 18 0 0 chr12 13894308 13895454 -130387035 - L1PA3 LINE L1 -3 6152 5005 8356 29 0 0 chr12 13895454 13896416 -130386073 + L1PA3 LINE L1 4020 4981 -1165 479 310 30 35 chr12 13897225 13897422 -130385067 + MER20 DNA MER1_type 1 196 -23 2369 76 0 19 chr12 13898985 13899300 -130383189 - AluSq SINE Alu -4 309 1 4577 52 16 0 chr12 13900579 13901140 -130381349 - L1PA5 LINE L1 0 6154 5585 220 215 0 77 chr12 13901385 13901450 -130381039 - L2 LINE L2 -8 3264 3205 207 347 71 10 chr12 13901602 13901700 -130380789 + L2 LINE L2 3149 3252 -20 329 318 66 71 chr12 13906698 13906804 -130375685 - MIR3 SINE MIR -6 202 96 2220 95 7 0 chr12 13906804 13907100 -130375389 + AluSp SINE Alu 1 298 -15 329 318 66 71 chr12 13907100 13907191 -130375298 - MIR3 SINE MIR -112 96 6 3819 123 51 47 chr12 13908059 13908454 -130374035 + MER39B LTR ERV1 6 407 -246 1670 154 20 20 chr12 13908454 13908747 -130373742 + AluJo SINE Alu 1 293 -19 3819 123 51 47 chr12 13908747 13908996 -130373493 + MER39B LTR ERV1 407 653 0 238 313 61 61 chr12 13909614 13909761 -130372728 + L2 LINE L2 3122 3268 -4 2348 77 0 16 chr12 13909819 13910132 -130372357 - AluSq SINE Alu -5 308 1 34 42 0 0 chr12 13910157 13910205 -130372284 + AT_rich Low_complexity Low_complexity 1 48 0 202 267 0 0 chr12 13912734 13912779 -130369710 + C-rich Low_complexity Low_complexity 6 50 0 2368 72 0 3 chr12 13913228 13913532 -130368957 + AluY SINE Alu 2 304 -7 2020 115 3 10 chr12 13913841 13914137 -130368352 + AluSx SINE Alu 1 294 -18 274 328 47 26 chr12 13914180 13914372 -130368117 + L2 LINE L2 2887 3082 -190 1047 87 0 0 chr12 13914406 13914544 -130367945 - FLAM_C SINE Alu -5 138 1 311 265 59 52 chr12 13914630 13914766 -130367723 - MER5B DNA MER1_type 0 178 42 356 332 119 5 chr12 13914888 13915081 -130367408 - L3 LINE CR1 -693 884 670 23 0 0 0 chr12 13915340 13915363 -130367126 + AT_rich Low_complexity Low_complexity 1 23 0 1351 227 111 32 chr12 13915799 13916231 -130366258 + LTR33 LTR ERVL 1 466 -55 1264 262 30 41 chr12 13917500 13917867 -130364622 + MLT1J LTR MaLR 147 509 -2 25 95 0 0 chr12 13918714 13918788 -130363701 + GC_rich Low_complexity Low_complexity 1 74 0 810 274 80 94 chr12 13918994 13919778 -130362711 + HAL1 LINE L1 1093 1865 -642 386 276 39 8 chr12 13919839 13919966 -130362523 - MIR SINE MIR -131 131 1 374 242 30 104 chr12 13920043 13920312 -130362177 + HAL1 LINE L1 2247 2495 -12 292 318 81 47 chr12 13920481 13920739 -130361750 - L2 LINE L2 -432 2882 2616 246 303 41 49 chr12 13921002 13921124 -130361365 + L2 LINE L2 3146 3266 -6 2306 72 10 0 chr12 13921271 13921564 -130360925 - AluSx SINE Alu -16 296 1 547 276 91 49 chr12 13923202 13923466 -130359023 - L3 LINE CR1 -7 1570 1296 237 132 0 0 chr12 13923580 13923618 -130358871 + (TTC)n Simple_repeat Simple_repeat 2 39 0 206 346 67 19 chr12 13923809 13924057 -130358432 + L2 LINE L2 2703 2970 -302 1786 127 53 14 chr12 13924217 13924500 -130357989 - AluSx SINE Alu -18 294 1 3596 145 44 0 chr12 13924648 13925267 -130357222 - L1MC1 LINE L1 -5 6328 5683 344 351 48 34 chr12 13925401 13925609 -130356880 + HAL1 LINE L1 1447 1657 -850 358 309 114 29 chr12 13926128 13926478 -130356011 + L1ME LINE L1 5256 5635 -486 332 326 57 17 chr12 13927862 13928037 -130354452 - MIR SINE MIR -34 228 47 244 261 29 14 chr12 13928386 13928455 -130354034 - L2 LINE L2 -239 3074 3005 275 222 181 0 chr12 13930070 13930142 -130352347 - MIR SINE MIR -14 248 164 40 73 0 0 chr12 13931676 13931758 -130350731 + GC_rich Low_complexity Low_complexity 1 82 0 67 103 0 0 chr12 13931774 13932016 -130350473 + GC_rich Low_complexity Low_complexity 1 242 0 259 202 71 36 chr12 13932940 13933024 -130349465 - MIR3 SINE MIR -25 183 97 180 401 15 15 chr12 13933948 13934080 -130348409 + MIR3 SINE MIR 10 141 -67 2093 117 0 7 chr12 13934416 13934723 -130347766 + AluSx SINE Alu 1 305 -7 343 195 253 78 chr12 13935148 13935302 -130347187 + MIR SINE MIR 82 262 0 1931 153 0 0 chr12 13936437 13936732 -130345757 + AluSx SINE Alu 1 295 -17 225 224 0 17 chr12 13936732 13936781 -130345708 + (TA)n Simple_repeat Simple_repeat 2 51 -7 216 0 0 0 chr12 13936781 13936805 -130345684 + (CA)n Simple_repeat Simple_repeat 2 25 0 225 224 0 17 chr12 13936805 13936813 -130345676 + (TA)n Simple_repeat Simple_repeat 51 58 0 237 222 0 0 chr12 13938202 13938265 -130344224 + (TG)n Simple_repeat Simple_repeat 2 64 0 225 0 0 0 chr12 13939149 13939174 -130343315 + (TG)n Simple_repeat Simple_repeat 2 26 0 1062 99 0 0 chr12 13939530 13939672 -130342817 - AluSq/x SINE Alu -170 142 1 3887 195 32 15 chr12 13939672 13940558 -130341931 - L1 LINE L1 -1830 4316 3416 1966 227 60 69 chr12 13940550 13941202 -130341287 + L1MC4 LINE L1 6412 7057 -985 * 8002 60 2 8 chr12 13941314 13942323 -130340166 + MER11C LTR ERVK 69 1071 0 1868 167 53 12 chr12 13943206 13943548 -130338941 + MLT1A1 LTR MaLR 10 365 0 698 237 40 0 chr12 13944175 13944348 -130338141 + LTR40b LTR ERVL 1 180 -282 428 248 31 8 chr12 13944358 13944487 -130338002 + FLAM_C SINE Alu 2 133 0 789 36 20 52 chr12 13948130 13948332 -130334157 + (TAGA)n Simple_repeat Simple_repeat 1 195 0 229 262 78 48 chr12 13948421 13948524 -130333965 + MIR3 SINE MIR 10 115 -93 242 274 11 63 chr12 13948824 13948919 -130333570 - MIR SINE MIR 0 262 173 230 352 0 23 chr12 13949103 13949191 -130333298 + GA-rich Low_complexity Low_complexity 5 90 0 262 289 48 46 chr12 13949813 13949998 -130332491 + MIR SINE MIR 8 192 -64 376 252 107 19 chr12 13951481 13951584 -130330905 - L2 LINE L2 -3 3269 3158 282 209 116 0 chr12 13951684 13951770 -130330719 - L1ME4a LINE L1 -37 6084 5989 22 35 0 0 chr12 13952308 13952337 -130330152 + AT_rich Low_complexity Low_complexity 1 29 0 706 231 14 21 chr12 13952337 13952568 -130329921 - L1PA3 LINE L1 -3 6152 5924 286 269 141 0 chr12 13953195 13953273 -130329216 - MIR3 SINE MIR -11 197 109 189 0 0 0 chr12 13953788 13953809 -130328680 + (A)n Simple_repeat Simple_repeat 1 21 0 245 338 20 47 chr12 13955421 13955569 -130326920 - MIR SINE MIR -62 200 57 351 253 56 39 chr12 13956665 13956843 -130325646 + AluJo SINE Alu 27 207 -95 819 239 41 0 chr12 13958139 13958336 -130324153 - MER58A DNA MER1_type -1 223 19 249 336 136 20 chr12 13958628 13958923 -130323566 + L3b LINE CR1 1109 1437 -146 792 166 0 14 chr12 13959410 13959555 -130322934 + (TTAG)n Simple_repeat Simple_repeat 3 145 0 21 57 0 0 chr12 13959856 13959891 -130322598 + GC_rich Low_complexity Low_complexity 1 35 0 1373 73 6 0 chr12 13960068 13960245 -130322244 - AluSp SINE Alu -118 195 18 286 247 27 0 chr12 13961874 13961947 -130320542 + MER94 DNA DNA 4 78 -56 616 291 138 19 chr12 13961985 13962304 -130320185 - L3 LINE CR1 -156 1421 1065 228 284 29 39 chr12 13962584 13962686 -130319803 + MIR SINE MIR 35 135 -127 1839 134 0 0 chr12 13964494 13964769 -130317720 - AluSx SINE Alu -37 275 1 991 242 35 102 chr12 13964769 13965199 -130317290 - L1ME3A LINE L1 -284 5894 5494 418 187 9 75 chr12 13965200 13965307 -130317182 - L1MDa LINE L1 -5826 714 615 22 99 0 0 chr12 13965690 13965761 -130316728 + GC_rich Low_complexity Low_complexity 1 71 0 518 108 0 32 chr12 13966361 13966454 -130316035 + L1PA5 LINE L1 6065 6154 0 537 321 15 11 chr12 13966462 13966730 -130315759 + L1MC/D LINE L1 4762 5030 -1116 1607 153 7 35 chr12 13966741 13967028 -130315461 + AluJb SINE Alu 26 304 -8 568 277 77 18 chr12 13967053 13967327 -130315162 + L1MC/D LINE L1 5365 5654 -2154 454 313 100 60 chr12 13967962 13968243 -130314246 - L2 LINE L2 -2 3270 2979 230 300 0 56 chr12 13968568 13968658 -130313831 + MIR3 SINE MIR 97 181 -27 811 165 0 8 chr12 13969599 13969756 -130312733 + FLAM_C SINE Alu 2 157 0 945 232 84 21 chr12 13971316 13971611 -130310878 + MLT1F LTR MaLR 5 388 -154 710 181 36 31 chr12 13971612 13971805 -130310684 - L1MB8 LINE L1 -19 6159 5966 229 271 76 0 chr12 13971800 13971918 -130310571 - L1M4 LINE L1 -1563 4583 4457 * 195 330 148 11 chr12 13972810 13972898 -130309591 + L2 LINE L2 3163 3262 -10 455 229 101 53 chr12 13973086 13973274 -130309215 + MLT1D LTR MaLR 1 197 -308 36 53 0 0 chr12 13973291 13973348 -130309141 + GC_rich Low_complexity Low_complexity 1 57 0 430 273 45 8 chr12 13974310 13974442 -130308047 + MIR SINE MIR 118 254 -8 219 169 52 104 chr12 13975108 13975262 -130307227 + (CATCC)n Simple_repeat Simple_repeat 1 146 0 246 327 180 40 chr12 13975281 13975553 -130306936 + L2 LINE L2 2478 2787 -527 375 232 21 32 chr12 13975619 13975714 -130306775 + MLT1J LTR MaLR 147 240 -271 292 311 111 0 chr12 13977461 13977596 -130304893 - MIR SINE MIR -15 247 98 576 165 85 160 chr12 13985635 13985823 -130296666 - MLT2D LTR ERVL 0 414 241 194 283 101 40 chr12 13986634 13986733 -130295756 - L2 LINE L2 -34 3279 3175 1709 112 8 0 chr12 13987193 13987443 -130295046 - MSTA-int LTR MaLR -1326 254 3 524 128 0 0 chr12 13987445 13987523 -130294966 - MSTA LTR MaLR 0 428 351 2115 133 47 8 chr12 13988136 13988497 -130293992 - THE1C LTR MaLR 0 375 1 1707 121 45 28 chr12 13989196 13989485 -130293004 - AluSx SINE Alu -18 294 1 1415 288 90 42 chr12 13989705 13990340 -130292149 - MER115 DNA AcHobo -22 671 7 203 307 21 57 chr12 13990351 13990491 -130291998 + L2 LINE L2 1814 1948 -1366 430 367 92 20 chr12 13990656 13991057 -130291432 + L2 LINE L2 2351 2780 -534 351 302 75 19 chr12 13991354 13991460 -130291029 + L2 LINE L2 3139 3250 -22 261 220 11 99 chr12 13991739 13991830 -130290659 + MER115 DNA AcHobo 2 84 -609 385 344 100 33 chr12 13991921 13992442 -130290047 - L2 LINE L2 -449 2865 2310 228 314 91 58 chr12 13993145 13993266 -130289223 + L3 LINE CR1 967 1091 -486 1278 225 0 29 chr12 13994624 13994931 -130287558 - AluJo SINE Alu -13 299 2 209 271 51 0 chr12 13996508 13996567 -130285922 - L2 LINE L2 -562 2752 2691 185 253 81 46 chr12 13997786 13997873 -130284616 + MIR3 SINE MIR 112 201 -7 185 276 0 52 chr12 13998490 13998548 -130283941 + L2 LINE L2 3258 3312 -1 226 315 54 33 chr12 13998619 13998711 -130283778 - L3 LINE CR1 -174 1403 1310 1621 282 111 26 chr12 14000241 14001111 -130281378 + L2 LINE L2 2208 3152 -161 397 204 50 62 chr12 14001121 14001303 -130281186 - MLT1H LTR MaLR -11 614 439 685 288 132 3 chr12 14001541 14001829 -130280660 + L2 LINE L2 2986 3310 -3 23 33 0 0 chr12 14002419 14002449 -130280040 + AT_rich Low_complexity Low_complexity 1 30 0 196 337 32 0 chr12 14002533 14002638 -130279851 - MIR SINE MIR -69 139 41 273 253 44 22 chr12 14003846 14003937 -130278552 - MER117 DNA MER1_type -60 137 45 662 114 9 19 chr12 14006482 14006587 -130275902 - FLAM_A SINE Alu -9 133 30 3119 158 53 23 chr12 14006604 14007180 -130275309 - MER6A DNA MER2_type -19 586 -4 599 75 37 9 chr12 14008465 14008572 -130273917 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 842 139 0 8 chr12 14009158 14009280 -130273209 + AluJb SINE Alu 5 125 -187 634 220 38 13 chr12 14009426 14009585 -130272904 - MIR SINE MIR -23 239 77 262 269 103 32 chr12 14009704 14009860 -130272629 + MIR SINE MIR 29 195 -67 2241 200 82 21 chr12 14009902 14010102 -130272387 + MLT1F LTR MaLR 1 187 -355 2725 90 0 0 chr12 14010102 14010457 -130272032 + THE1A LTR MaLR 1 355 0 2241 200 82 21 chr12 14010457 14010767 -130271722 + MLT1F LTR MaLR 187 542 0 199 314 42 8 chr12 14011167 14011285 -130271204 + L2 LINE L2 2771 2892 -422 311 0 0 25 chr12 14011289 14011329 -130271160 + (TCCCC)n Simple_repeat Simple_repeat 3 41 0 425 318 17 12 chr12 14011393 14011730 -130270759 + CT-rich Low_complexity Low_complexity 1 338 0 254 319 14 21 chr12 14012724 14012868 -130269621 + CT-rich Low_complexity Low_complexity 1 143 0 1933 154 3 3 chr12 14013865 14014170 -130268319 + AluJb SINE Alu 1 305 -7 253 338 38 56 chr12 14015837 14016103 -130266386 - L2 LINE L2 -337 2977 2717 405 313 70 57 chr12 14016811 14017194 -130265295 - L2 LINE L2 -50 3263 2873 1893 171 0 0 chr12 14017194 14017492 -130264997 + AluJo SINE Alu 1 298 -14 405 313 70 57 chr12 14017492 14017511 -130264978 - L2 LINE L2 -440 2873 2856 245 234 0 0 chr12 14017520 14017584 -130264905 + C-rich Low_complexity Low_complexity 1 64 0 196 329 0 21 chr12 14017721 14017861 -130264628 + C-rich Low_complexity Low_complexity 2 138 0 223 241 0 17 chr12 14017887 14017945 -130264544 + C-rich Low_complexity Low_complexity 4 60 0 26 30 0 0 chr12 14018572 14018605 -130263884 + AT_rich Low_complexity Low_complexity 1 33 0 775 304 77 19 chr12 14018696 14019127 -130263362 - L1MC4a LINE L1 -1723 6085 5630 2732 154 59 62 chr12 14019503 14020013 -130262476 + MER61D LTR ERV1 1 793 -1 185 324 14 14 chr12 14020203 14020274 -130262215 + MIR SINE MIR 23 93 -115 646 116 11 5 chr12 14020754 14020943 -130261546 + AluSg1 SINE Alu 16 296 -14 800 273 181 3 chr12 14021010 14021380 -130261109 - LTR33A LTR ERVL 0 523 88 349 300 6 69 chr12 14021943 14022103 -130260386 - MIR3 SINE MIR -6 202 53 292 236 28 28 chr12 14022741 14022847 -130259642 + GA-rich Low_complexity Low_complexity 3 108 0 1704 162 3 43 chr12 14023363 14023666 -130258823 + AluJb SINE Alu 22 312 0 2278 113 0 0 chr12 14023879 14024188 -130258301 - AluY SINE Alu -2 309 1 1622 192 19 33 chr12 14024766 14025125 -130257364 + MLT1A1 LTR MaLR 10 363 -2 237 234 0 0 chr12 14025506 14025570 -130256919 + GA-rich Low_complexity Low_complexity 2 65 0 511 138 0 0 chr12 14027463 14027543 -130254946 + MER116 DNA Mariner 1 80 0 265 331 115 13 chr12 14027550 14027707 -130254782 + MIR SINE MIR 20 192 -70 298 312 34 56 chr12 14027771 14027950 -130254539 - MIR SINE MIR -60 202 29 261 83 0 0 chr12 14027955 14027991 -130254498 + (T)n Simple_repeat Simple_repeat 1 36 0 2144 121 3 3 chr12 14028162 14028469 -130254020 - AluSx SINE Alu -5 307 1 210 292 198 0 chr12 14028830 14028926 -130253563 + MIR SINE MIR 28 142 -66 1571 174 3 81 chr12 14030738 14030871 -130251618 + AluJo SINE Alu 1 143 -169 7284 39 2 5 chr12 14030871 14031751 -130250738 + L1PA5 LINE L1 5277 6154 0 1571 174 3 81 chr12 14031751 14031938 -130250551 + AluJo SINE Alu 143 296 -16 221 264 82 64 chr12 14032553 14032663 -130249826 + L2 LINE L2 3167 3278 -35 727 268 59 107 chr12 14032789 14033330 -130249159 + MLT1K LTR MaLR 66 580 -8 908 237 139 8 chr12 14033630 14034136 -130248353 + L1ME3A LINE L1 5023 5581 -581 511 195 41 0 chr12 14034167 14034290 -130248199 + L1ME3A LINE L1 6030 6157 -13 332 175 0 0 chr12 14034441 14034498 -130247991 + LTR67 LTR ERVL 501 557 0 687 276 87 5 chr12 14034706 14034902 -130247587 + MIR SINE MIR 7 218 -44 6375 88 31 0 chr12 14035054 14036254 -130246235 - L1PB1 LINE L1 -1 6150 4932 265 366 69 17 chr12 14037427 14037602 -130244887 + MIR3 SINE MIR 8 191 -17 454 322 105 45 chr12 14038158 14038677 -130243812 - L2 LINE L2 -4 3268 2730 215 244 67 0 chr12 14039416 14039506 -130242983 + (CATA)n Simple_repeat Simple_repeat 4 99 0 366 123 0 0 chr12 14039552 14039609 -130242880 + (CA)n Simple_repeat Simple_repeat 2 58 0 2216 178 2 65 chr12 14039652 14040146 -130242343 + MLT1D LTR MaLR 43 505 0 540 299 34 20 chr12 14040215 14040419 -130242070 - LTR67 LTR ERVL -4 553 347 234 245 20 92 chr12 14040685 14040783 -130241706 + MER102a DNA MER1_type 221 311 -19 384 358 101 33 chr12 14040874 14041660 -130240829 - L2 LINE L2 -342 2972 2134 1724 163 72 40 chr12 14042014 14042327 -130240162 - MLT1A1 LTR MaLR -5 360 33 2350 90 3 0 chr12 14042327 14042617 -130239872 + AluSg SINE Alu 1 291 -19 1724 163 72 40 chr12 14042617 14042652 -130239837 - MLT1A1 LTR MaLR -332 33 1 2324 102 0 0 chr12 14043165 14043460 -130239029 + AluSx SINE Alu 1 295 -17 2140 124 0 7 chr12 14044537 14044843 -130237646 + AluSx SINE Alu 1 304 -8 564 220 64 69 chr12 14045963 14046026 -130236463 + MER5A DNA MER1_type 13 75 -114 1476 197 61 10 chr12 14046026 14046149 -130236340 + AluJo SINE Alu 1 116 -196 201 39 0 0 chr12 14046149 14046175 -130236314 + (TTAAA)n Simple_repeat Simple_repeat 3 28 0 1476 197 61 10 chr12 14046175 14046346 -130236143 + AluJo SINE Alu 116 310 -2 564 220 64 69 chr12 14046346 14046455 -130236034 + MER5A DNA MER1_type 75 184 -5 241 292 31 0 chr12 14047055 14047120 -130235369 - L2 LINE L2 -1 3312 3246 21 0 0 0 chr12 14047251 14047272 -130235217 + AT_rich Low_complexity Low_complexity 1 21 0 258 241 35 0 chr12 14047280 14047338 -130235151 - MER91 DNA MER1_type -1 189 130 824 257 8 34 chr12 14048015 14048252 -130234237 - MIR SINE MIR -20 242 12 226 276 0 0 chr12 14048907 14048965 -130233524 + L1ME4a LINE L1 5871 5928 -1880 447 290 83 10 chr12 14048987 14049180 -130233309 + L2 LINE L2 2707 2913 -401 390 64 0 0 chr12 14049184 14049231 -130233258 + 5S rRNA rRNA 1 47 -74 1094 264 47 107 chr12 14049525 14050007 -130232482 - MER77 LTR ERV1 -11 594 154 225 154 0 0 chr12 14050234 14050273 -130232216 + (CA)n Simple_repeat Simple_repeat 2 40 0 263 200 0 0 chr12 14050273 14050328 -130232161 - MER4-int LTR ERV1 -5433 1165 1111 378 195 0 0 chr12 14050331 14050413 -130232076 + (CATA)n Simple_repeat Simple_repeat 1 82 0 4411 195 32 18 chr12 14050470 14051992 -130230497 - L1MA9 LINE L1 -30 6282 4739 255 322 34 34 chr12 14052946 14053123 -130229366 + L1ME4a LINE L1 5944 6120 -1 1419 143 4 13 chr12 14053564 14053802 -130228687 + MER46A DNA MER2_type 1 236 0 826 206 95 106 chr12 14054007 14054376 -130228113 + MLT1A1 LTR MaLR 1 365 0 3075 303 82 40 chr12 14054683 14056537 -130225952 - L2 LINE L2 -41 3272 1318 1796 148 148 34 chr12 14056713 14057097 -130225392 + MSTA LTR MaLR 1 428 0 194 350 78 17 chr12 14057229 14057409 -130225080 + L2 LINE L2 2848 3038 -234 204 125 0 0 chr12 14057542 14057574 -130224915 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 352 349 47 6 chr12 14059119 14059291 -130223198 + MIR SINE MIR 2 180 -82 262 313 0 0 chr12 14060278 14060361 -130222128 + (TTCA)n Simple_repeat Simple_repeat 3 85 0 414 276 257 0 chr12 14061642 14061794 -130220695 - L2 LINE L2 0 3272 3082 406 253 77 82 chr12 14061777 14061959 -130220530 + MIR SINE MIR 13 193 -69 * 252 252 9 90 chr12 14062085 14062196 -130220293 - L2 LINE L2 -269 3003 2902 26 74 0 0 chr12 14063393 14063447 -130219042 + AT_rich Low_complexity Low_complexity 1 54 0 440 315 34 13 chr12 14063530 14063679 -130218810 - MIR SINE MIR -80 182 31 628 222 7 26 chr12 14064126 14064279 -130218210 - L1MA10 LINE L1 0 6334 6185 186 118 0 0 chr12 14067385 14067419 -130215070 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 833 163 14 14 chr12 14067423 14067570 -130214919 - FRAM SINE Alu -30 146 1 428 339 89 6 chr12 14067716 14067889 -130214600 - MIR SINE MIR -43 219 31 416 250 0 46 chr12 14068454 14068562 -130213927 + MIR SINE MIR 19 121 -87 2383 115 120 5 chr12 14068753 14069137 -130213352 + MSTA LTR MaLR 1 428 0 463 286 193 26 chr12 14069184 14069495 -130212994 - MLT1L LTR MaLR -4 611 249 1257 249 50 69 chr12 14069679 14070200 -130212289 + MLT1J LTR MaLR 1 511 0 513 283 33 7 chr12 14070291 14070443 -130212046 + MIR SINE MIR 32 187 -75 327 178 42 119 chr12 14070510 14070628 -130211861 - MIR3 SINE MIR -10 198 90 2832 68 120 0 chr12 14071443 14071843 -130210646 + LTR7 LTR ERV1 1 448 -2 24050 94 8 13 chr12 14071845 14075679 -130206810 + HERVH LTR ERV1 1 3993 -3720 4450 145 0 1 chr12 14075681 14076344 -130206145 + HERVH LTR ERV1 4488 5149 -2564 1442 130 19 0 chr12 14076345 14076561 -130205928 + HERVH LTR ERV1 5600 5819 -1894 2304 102 59 13 chr12 14076561 14076934 -130205555 + HERVH LTR ERV1 7324 7713 0 2645 69 149 0 chr12 14076934 14077324 -130205165 + LTR7 LTR ERV1 1 448 -2 250 246 58 0 chr12 14077633 14077702 -130204787 - MIR SINE MIR -108 154 82 * 362 258 62 23 chr12 14077698 14077826 -130204663 - MIR3 SINE MIR -6 202 70 191 303 91 45 chr12 14080163 14080295 -130202194 + MIR3 SINE MIR 5 142 -66 * 462 252 0 26 chr12 14080270 14080385 -130202104 + MIR SINE MIR 117 228 -34 229 242 0 55 chr12 14080945 14081036 -130201453 + C-rich Low_complexity Low_complexity 2 87 0 23 33 0 0 chr12 14081195 14081225 -130201264 + AT_rich Low_complexity Low_complexity 1 30 0 556 281 143 9 chr12 14081838 14082062 -130200427 - MIR SINE MIR -6 256 3 427 88 0 0 chr12 14082137 14082194 -130200295 + MER57A LTR ERV1 1 57 -346 1764 120 108 22 chr12 14082324 14082640 -130199849 + MER57A LTR ERV1 61 403 0 1964 141 0 0 chr12 14083277 14083574 -130198915 + AluSx SINE Alu 1 297 -15 248 331 15 59 chr12 14083626 14083762 -130198727 - MIR SINE MIR -72 190 61 352 323 67 73 chr12 14083995 14084265 -130198224 - L2 LINE L2 -23 3249 2980 2070 179 42 17 chr12 14084265 14084668 -130197821 + MLT2D LTR ERVL 2 414 0 352 323 67 73 chr12 14084668 14084725 -130197764 - L2 LINE L2 -292 2980 2924 883 169 43 60 chr12 14085089 14085273 -130197216 - MLT2D LTR ERVL 0 414 234 1107 127 35 6 chr12 14085275 14085448 -130197041 + AluSx SINE Alu 1 178 -134 328 217 171 70 chr12 14086097 14086226 -130196263 - L2 LINE L2 -20 3293 3152 2803 186 22 32 chr12 14086227 14086757 -130195732 + MLT2B3 LTR ERVL 1 525 -29 2932 188 18 99 chr12 14086757 14086832 -130195657 - MER72 LTR ERV1 0 722 642 3662 50 0 11 chr12 14086832 14087296 -130195193 + L1PA8 LINE L1 5713 6171 -1 2932 188 18 99 chr12 14087296 14087844 -130194645 - MER72 LTR ERV1 -80 642 172 1582 156 4 19 chr12 14087844 14088114 -130194375 + AluJo SINE Alu 7 272 -40 2932 188 18 99 chr12 14088114 14088264 -130194225 - MER72 LTR ERV1 -550 172 11 16809 166 30 20 chr12 14088289 14091176 -130191313 + ERVL-B3-B3 LTR ERVL 2 2918 -2846 9487 138 25 1 chr12 14091173 14092597 -130189892 + ERVL-B3-B3 LTR ERVL 3049 4507 -1257 * 357 67 0 33 chr12 14092597 14092657 -130189832 + MER65A LTR ERV1 1 58 -387 1994 141 3 0 chr12 14092657 14092954 -130189535 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr12 14092965 14092987 -130189502 + AT_rich Low_complexity Low_complexity 1 22 0 2308 159 23 5 chr12 14092987 14093383 -130189106 + MER65A LTR ERV1 43 445 0 4856 139 34 3 chr12 14093384 14094569 -130187920 + ERVL-B3-B3 LTR ERVL 4505 5758 -6 2810 173 10 89 chr12 14094574 14095170 -130187319 + MLT2B3 LTR ERVL 6 554 0 644 226 28 83 chr12 14095481 14095733 -130186756 - MER112 DNA MER1_type -6 254 17 2058 55 4 0 chr12 14095878 14096134 -130186355 + AluY SINE Alu 43 299 -12 515 327 65 54 chr12 14096145 14096589 -130185900 - L2 LINE L2 -1046 2268 1820 247 309 12 0 chr12 14097369 14097450 -130185039 - MIR SINE MIR -2 260 179 251 331 8 15 chr12 14097452 14097582 -130184907 + CT-rich Low_complexity Low_complexity 1 129 0 719 214 34 87 chr12 14097617 14097823 -130184666 - MIR SINE MIR -61 201 7 1138 285 54 29 chr12 14098642 14099161 -130183328 - HAL1 LINE L1 -1245 1262 731 1205 300 115 4 chr12 14099169 14099649 -130182840 - HAL1 LINE L1 -1972 535 3 401 313 48 12 chr12 14100278 14100444 -130182045 + MIR SINE MIR 33 204 -58 1438 229 132 24 chr12 14100587 14101042 -130181447 - MER74A LTR ERVL 0 558 55 942 159 0 7 chr12 14101143 14101294 -130181195 - MLT1A1 LTR MaLR -215 150 1 504 238 30 145 chr12 14101294 14101629 -130180860 + HAL1 LINE L1 2086 2458 -49 2796 143 0 36 chr12 14101629 14102076 -130180413 + Tigger2a DNA MER2_type 1 431 -3 311 65 22 0 chr12 14102077 14102123 -130180366 + (TG)n Simple_repeat Simple_repeat 2 48 0 504 238 30 145 chr12 14102123 14102255 -130180234 + HAL1 LINE L1 2457 2501 -6 915 129 0 29 chr12 14102279 14102418 -130180071 - FLAM_C SINE Alu -8 135 1 1809 218 32 13 chr12 14102994 14103370 -130179119 + MSTD LTR MaLR 1 383 -13 184 319 0 0 chr12 14104075 14104122 -130178367 + MIR3 SINE MIR 151 197 -11 189 282 7 74 chr12 14104168 14104275 -130178214 - MIR SINE MIR -105 103 12 1195 240 81 53 chr12 14104855 14105066 -130177423 - MLT1I LTR MaLR 0 409 180 2369 92 0 7 chr12 14105066 14105372 -130177117 - AluY SINE Alu -7 304 1 1195 240 81 53 chr12 14105372 14105556 -130176933 - MLT1I LTR MaLR -229 180 3 450 274 48 0 chr12 14105596 14105720 -130176769 + L2 LINE L2 3143 3272 0 2168 62 0 0 chr12 14105872 14106131 -130176358 + AluY SINE Alu 31 289 -22 417 194 10 20 chr12 14107584 14107682 -130174807 - MER58C DNA MER1_type -13 202 106 402 205 2 105 chr12 14107717 14107786 -130174703 - MER58 DNA MER1_type -122 93 55 2509 66 0 0 chr12 14107786 14108088 -130174401 + AluY SINE Alu 1 302 -9 402 205 2 105 chr12 14108088 14108138 -130174351 - MER58 DNA MER1_type -160 55 1 330 280 80 0 chr12 14109319 14109419 -130173070 - L2 LINE L2 -4 3268 3161 229 231 0 0 chr12 14110413 14110465 -130172024 - L2 LINE L2 0 3313 3262 2246 180 25 0 chr12 14110569 14110925 -130171564 + MLT1A1 LTR MaLR 1 365 0 331 198 74 25 chr12 14110928 14111009 -130171480 + L2 LINE L2 3188 3272 0 905 304 8 4 chr12 14112129 14112372 -130170117 - MLT1I LTR MaLR -4 405 162 470 288 94 0 chr12 14113166 14113336 -130169153 + MER112 DNA MER1_type 66 251 -9 279 0 0 0 chr12 14113379 14113410 -130169079 + (A)n Simple_repeat Simple_repeat 1 31 0 902 290 87 29 chr12 14113736 14114293 -130168196 - L1MEd LINE L1 -4862 1257 744 820 185 6 13 chr12 14114624 14114781 -130167708 - L1MA4 LINE L1 -9 6291 6136 358 328 22 8 chr12 14115059 14115193 -130167296 - L1MEd LINE L1 -5423 696 561 229 271 103 19 chr12 14115398 14115505 -130166984 - L1MEd LINE L1 -5993 126 11 375 248 168 18 chr12 14115523 14115636 -130166853 + L2 LINE L2 3139 3268 -4 408 330 50 17 chr12 14117078 14117257 -130165232 - MIR SINE MIR -74 188 4 324 83 0 0 chr12 14117508 14117556 -130164933 + (CA)n Simple_repeat Simple_repeat 2 49 0 219 368 56 0 chr12 14118153 14118278 -130164211 - L2 LINE L2 -3 3310 3179 614 218 60 68 chr12 14118948 14119262 -130163227 - LTR45B LTR ERV1 0 594 309 25 0 0 0 chr12 14119357 14119382 -130163107 + AT_rich Low_complexity Low_complexity 1 25 0 201 260 0 40 chr12 14120352 14120402 -130162087 + polypurine Low_complexity Low_complexity 1 48 0 1544 174 0 8 chr12 14120431 14120678 -130161811 - AluSx SINE Alu -65 247 3 528 16 0 0 chr12 14120760 14120821 -130161668 + (TA)n Simple_repeat Simple_repeat 1 61 0 873 137 0 58 chr12 14120825 14120964 -130161525 - FLAM_C SINE Alu -1 132 2 474 285 135 32 chr12 14121544 14121856 -130160633 + L1MEd LINE L1 895 1238 -4881 2391 103 0 3 chr12 14122166 14122476 -130160013 - AluSq SINE Alu -4 309 1 809 240 125 0 chr12 14122482 14122674 -130159815 + MER20 DNA MER1_type 3 218 -1 1103 196 22 48 chr12 14122823 14123094 -130159395 - L1MA10 LINE L1 -18 6316 6053 835 22 0 0 chr12 14123197 14123289 -130159200 - L1PA3 LINE L1 -4 6151 6060 21 71 0 0 chr12 14123466 14123508 -130158981 + AT_rich Low_complexity Low_complexity 1 42 0 1832 167 3 3 chr12 14124019 14124319 -130158170 + AluJo SINE Alu 1 300 -12 218 233 0 0 chr12 14125456 14125499 -130156990 + (TA)n Simple_repeat Simple_repeat 1 43 0 658 260 117 17 chr12 14125932 14126163 -130156326 - MIR SINE MIR -2 260 7 303 288 86 61 chr12 14126280 14126478 -130156011 - L1ME3A LINE L1 -5 6165 5963 1057 246 96 11 chr12 14126579 14126932 -130155557 - L1MC5 LINE L1 -433 7528 7146 1240 233 23 68 chr12 14126941 14127476 -130155013 - L1MC5 LINE L1 -832 6976 6488 1765 217 37 17 chr12 14127556 14127966 -130154523 + LTR52 LTR ERVL 1 418 -3 248 361 26 16 chr12 14128192 14128386 -130154103 - HAL1b LINE L1 -708 640 445 351 305 52 44 chr12 14128577 14128984 -130153505 - HAL1b LINE L1 -901 447 38 333 315 57 47 chr12 14130005 14130389 -130152100 - HAL1b LINE L1 -908 440 53 287 225 47 152 chr12 14131024 14131300 -130151189 - LTR41 LTR ERVL 0 773 527 511 228 76 35 chr12 14131611 14131756 -130150733 - LTR41 LTR ERVL -622 151 1 236 262 19 37 chr12 14132503 14132610 -130149879 - MLT-int LTR MaLR -30 1705 1601 2347 97 3 0 chr12 14132734 14133044 -130149445 - AluSp SINE Alu -2 311 1 300 247 41 0 chr12 14133955 14134065 -130148424 - MLT1F LTR MaLR 0 542 280 2460 38 41 0 chr12 14135599 14135889 -130146600 - AluY SINE Alu -9 302 1 286 310 69 0 chr12 14136480 14136596 -130145893 + L2 LINE L2 3136 3259 -13 767 239 45 0 chr12 14137735 14137911 -130144578 - MIR SINE MIR -10 252 69 205 179 0 0 chr12 14137937 14137976 -130144513 + L2 LINE L2 3275 3313 0 1078 223 50 88 chr12 14137996 14138372 -130144117 - MLT1A1 LTR MaLR 0 365 4 190 229 0 0 chr12 14139419 14139454 -130143035 - L2 LINE L2 -3 3310 3276 3289 131 3 74 chr12 14139613 14140247 -130142242 - L1MA5 LINE L1 0 6300 5712 231 392 150 7 chr12 14140357 14140510 -130141979 - L2 LINE L2 -54 3218 3044 569 296 47 6 chr12 14140527 14140696 -130141793 - MIR3 SINE MIR -13 195 20 795 112 0 0 chr12 14141376 14141492 -130140997 - L1MA3 LINE L1 -21 6284 6169 195 236 139 0 chr12 14142851 14142923 -130139566 + MIR3 SINE MIR 104 185 -23 665 258 167 65 chr12 14144359 14144743 -130137746 + MLT1J1 LTR MaLR 53 475 -36 246 330 70 0 chr12 14145319 14145434 -130137055 - MIR3 SINE MIR -48 160 38 2579 139 131 36 chr12 14145465 14145940 -130136549 - MLT2B1 LTR ERVL 0 520 1 555 209 6 52 chr12 14146090 14146262 -130136227 - LTR7 LTR ERV1 -17 433 270 1771 196 115 79 chr12 14146472 14147053 -130135436 - MLT1E2 LTR MaLR -24 602 1 423 0 0 0 chr12 14147845 14147892 -130134597 + (TG)n Simple_repeat Simple_repeat 1 47 0 393 223 29 0 chr12 14149505 14149644 -130132845 + CT-rich Low_complexity Low_complexity 2 144 0 382 345 103 30 chr12 14149652 14150293 -130132196 + L2 LINE L2 2554 3251 -21 223 282 29 94 chr12 14150787 14150957 -130131532 - MIR SINE MIR -1 261 103 307 188 130 0 chr12 14151295 14151364 -130131125 + L2 LINE L2 3200 3277 -36 806 219 97 25 chr12 14151527 14152109 -130130380 - MER4C LTR ERV1 0 695 1 465 119 0 60 chr12 14152148 14152163 -130130326 + MER96 DNA MER1_type? 1 15 -160 2623 178 78 98 chr12 14152163 14152905 -130129584 + LTR8A LTR ERV1 1 727 0 465 119 0 60 chr12 14152905 14152973 -130129516 + MER96 DNA MER1_type? 15 79 -96 1247 207 54 34 chr12 14153210 14153563 -130128926 - L1MD2 LINE L1 0 6359 6000 399 350 34 25 chr12 14153808 14154045 -130128444 + MARNA DNA Mariner 317 555 -31 2392 97 3 0 chr12 14154183 14154483 -130128006 - AluSx SINE Alu -10 302 2 776 288 56 84 chr12 14154898 14155360 -130127129 + MER115 DNA AcHobo 1 449 -244 299 250 39 90 chr12 14155701 14155815 -130126674 - MER5B DNA MER1_type -2 176 71 1053 166 17 0 chr12 14155815 14155990 -130126499 - MER5B DNA MER1_type 0 178 1 299 250 39 90 chr12 14155990 14156031 -130126458 - MER5B DNA MER1_type -107 71 29 902 324 141 34 chr12 14157040 14157971 -130124518 + L3 LINE CR1 198 1227 -350 3386 115 6 12 chr12 14158070 14158277 -130124212 + MER1A DNA MER1_type 53 260 -2442 2230 104 16 3 chr12 14158277 14158584 -130123905 + AluSx SINE Alu 1 311 -1 3386 115 6 12 chr12 14158584 14158856 -130123633 + MER1A DNA MER1_type 260 529 0 197 32 0 32 chr12 14160626 14160657 -130121832 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 44049 31 21 1 chr12 14160658 14166684 -130115805 - L1PA3 LINE L1 -4 6151 4 8240 17 0 0 chr12 14166686 14167734 -130114755 + L1PA2 LINE L1 5134 6181 0 14966 27 1 0 chr12 14167736 14169463 -130113026 - L1P LINE L1 -999 5147 3420 1941 162 0 0 chr12 14169465 14169761 -130112728 - AluSx SINE Alu -16 296 1 2056 193 56 40 chr12 14169823 14170320 -130112169 + MLT1D LTR MaLR 1 505 0 468 274 110 18 chr12 14170477 14170696 -130111793 + MIR SINE MIR 23 261 -1 325 294 184 0 chr12 14170789 14170925 -130111564 - MIR SINE MIR 0 262 102 2102 70 0 0 chr12 14170929 14171187 -130111302 + AluY SINE Alu 1 258 -53 2462 138 45 8 chr12 14171187 14171587 -130110902 + MSTA LTR MaLR 14 428 0 200 236 77 4 chr12 14171588 14171659 -130110830 - MIR SINE MIR -112 96 32 2160 122 7 0 chr12 14172527 14172830 -130109659 - AluSx SINE Alu -7 305 1 301 356 5 16 chr12 14174684 14174872 -130107617 + L2 LINE L2 2560 2745 -569 205 320 27 13 chr12 14174956 14175031 -130107458 - MER5A DNA MER1_type -85 104 29 22 0 0 0 chr12 14175387 14175409 -130107080 + AT_rich Low_complexity Low_complexity 1 22 0 190 300 40 0 chr12 14175947 14175997 -130106492 + L2 LINE L2 3196 3247 -25 28 48 0 0 chr12 14176096 14176138 -130106351 + AT_rich Low_complexity Low_complexity 1 42 0 1817 211 34 5 chr12 14176465 14176853 -130105636 - MLT1C LTR MaLR 0 467 69 2194 125 3 3 chr12 14176853 14177158 -130105331 - THE1B LTR MaLR 0 364 60 25 31 0 0 chr12 14178455 14178487 -130104002 + AT_rich Low_complexity Low_complexity 1 32 0 16664 177 30 20 chr12 14178694 14178822 -130103667 + L1MA4 LINE L1 6 131 -6351 1627 175 39 29 chr12 14178822 14179130 -130103359 + AluJo SINE Alu 1 311 -1 16664 177 30 20 chr12 14179130 14185301 -130097188 + L1MA4 LINE L1 131 6477 -5 656 297 131 50 chr12 14185358 14185779 -130096710 - L2 LINE L2 -669 2645 2191 333 329 98 14 chr12 14186737 14186880 -130095609 + MER5A DNA MER1_type 9 163 -26 367 269 199 13 chr12 14186922 14187078 -130095411 - MER5A DNA MER1_type -4 185 1 180 0 0 0 chr12 14187505 14187525 -130094964 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2514 60 0 25 chr12 14188637 14188951 -130093538 + AluY SINE Alu 1 306 -5 343 68 0 0 chr12 14188984 14189028 -130093461 + MADE1 DNA Mariner 35 78 -2 276 297 62 31 chr12 14189263 14189391 -130093098 + MIR SINE MIR 126 257 -5 836 269 149 36 chr12 14189944 14190192 -130092297 + L2 LINE L2 2851 3070 -243 320 0 25 0 chr12 14190192 14190232 -130092257 + (TG)n Simple_repeat Simple_repeat 1 41 0 836 269 149 36 chr12 14190232 14190399 -130092090 + L2 LINE L2 3070 3313 0 377 245 58 36 chr12 14190405 14190544 -130091945 - MIR3 SINE MIR -63 145 4 397 330 154 0 chr12 14190671 14190853 -130091636 + L2 LINE L2 2855 3064 -249 1950 131 125 12 chr12 14190853 14191181 -130091308 + MLT1A1 LTR MaLR 1 365 0 302 365 43 26 chr12 14192093 14192208 -130090281 - L2 LINE L2 -17 3255 3139 1587 75 0 75 chr12 14192743 14192982 -130089507 + AluSp SINE Alu 91 311 -2 223 352 14 28 chr12 14193247 14193318 -130089171 - L2 LINE L2 -18 3254 3185 250 363 48 8 chr12 14193851 14193975 -130088514 + L3 LINE CR1 1407 1535 -42 195 316 38 13 chr12 14194623 14194702 -130087787 + L3b LINE CR1 1353 1433 -150 536 303 65 22 chr12 14196022 14196274 -130086215 + MIR SINE MIR 3 262 0 210 200 15 31 chr12 14196522 14196587 -130085902 + (TG)n Simple_repeat Simple_repeat 2 65 0 201 176 0 0 chr12 14196582 14196616 -130085873 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 * 1589 209 103 32 chr12 14197093 14197529 -130084960 + MLT1C LTR MaLR 1 467 0 1373 201 14 7 chr12 14198761 14199040 -130083449 - L1PA16 LINE L1 -4 6162 5882 509 341 130 24 chr12 14199040 14199491 -130082998 + L2 LINE L2 2097 2599 -715 1014 211 82 5 chr12 14199648 14199856 -130082633 + MER58A DNA MER1_type 1 224 0 320 349 0 0 chr12 14200197 14200306 -130082183 + L2 LINE L2 2624 2732 -582 390 306 150 60 chr12 14200497 14200863 -130081626 + L2 LINE L2 2874 3272 0 267 378 30 43 chr12 14201146 14201376 -130081113 + L2 LINE L2 2819 3045 -227 306 0 0 0 chr12 14201439 14201473 -130081016 + (T)n Simple_repeat Simple_repeat 1 34 0 222 213 115 33 chr12 14201507 14201568 -130080921 + L2 LINE L2 3168 3233 -39 707 206 0 32 chr12 14201683 14201809 -130080680 + AluJo SINE Alu 5 126 -186 26 30 0 0 chr12 14201809 14201842 -130080647 + AT_rich Low_complexity Low_complexity 1 33 0 2078 65 0 0 chr12 14201870 14202116 -130080373 - L1PA7 LINE L1 -5 6149 5904 1091 166 5 26 chr12 14202116 14202309 -130080180 + AluJo SINE Alu 116 304 -8 296 258 67 0 chr12 14203414 14203503 -130078986 + L1ME4a LINE L1 5518 5612 -509 295 350 78 16 chr12 14203590 14203847 -130078642 + MLT1K LTR MaLR 81 353 -235 1117 228 176 24 chr12 14203875 14204335 -130078154 + L1ME4a LINE L1 5589 6118 -3 253 221 0 23 chr12 14205038 14205124 -130077365 + CT-rich Low_complexity Low_complexity 1 84 0 384 294 96 37 chr12 14206471 14206689 -130075800 - MIR SINE MIR -8 254 24 724 279 77 0 chr12 14206941 14207163 -130075326 + MIR SINE MIR 2 240 -22 991 279 110 7 chr12 14207197 14207505 -130074984 + L1ME3A LINE L1 5537 5876 -294 8177 121 10 43 chr12 14207516 14208852 -130073637 - THE1C-int LTR MaLR -286 1294 3 2065 153 38 19 chr12 14208854 14209220 -130073269 - THE1C LTR MaLR 0 375 3 2988 194 36 23 chr12 14209324 14209936 -130072553 + MLT1E3 LTR MaLR 2 621 -3 691 76 0 11 chr12 14209961 14210053 -130072436 - 5S rRNA rRNA -30 91 1 1487 222 48 52 chr12 14211149 14211671 -130070818 - L1MC4 LINE L1 -25 8017 7498 266 275 147 18 chr12 14211747 14211856 -130070633 - L2 LINE L2 -213 3059 2937 291 247 22 0 chr12 14212038 14212127 -130070362 - L1ME LINE L1 -325 5796 5706 208 158 26 0 chr12 14212141 14212179 -130070310 - L2 LINE L2 -20 3252 3214 * 241 320 99 33 chr12 14212178 14212359 -130070130 - MIR SINE MIR -20 242 50 181 200 29 57 chr12 14212589 14212659 -130069830 - L2 LINE L2 -524 2790 2723 961 244 133 4 chr12 14212732 14213002 -130069487 - L1MC4 LINE L1 -531 7511 7207 6272 167 44 32 chr12 14213096 14213459 -130069030 - L1MB1 LINE L1 -1 6167 5810 1946 102 113 0 chr12 14213459 14213734 -130068755 - AluSq SINE Alu -7 306 1 6272 167 44 32 chr12 14213734 14215563 -130066926 - L1MB1 LINE L1 -358 5810 3951 2050 237 70 15 chr12 14215569 14216165 -130066324 - L1MC4a LINE L1 -840 6968 6340 2035 189 88 16 chr12 14216178 14216664 -130065825 - L1ME2 LINE L1 -34 6130 5610 297 219 0 16 chr12 14216664 14216728 -130065761 + MLT1G1 LTR MaLR 1 63 -532 243 353 210 8 chr12 14216919 14217418 -130065071 + L2 LINE L2 2263 2862 -452 237 342 99 30 chr12 14217513 14217776 -130064713 + L2 LINE L2 3021 3301 -12 446 349 109 16 chr12 14218219 14218649 -130063840 + L2 LINE L2 2327 2796 -518 190 256 0 128 chr12 14218813 14218969 -130063520 + L2 LINE L2 2924 3059 -213 375 337 85 67 chr12 14219835 14220283 -130062206 + L2 LINE L2 2810 3265 -7 23 33 0 0 chr12 14221179 14221209 -130061280 + AT_rich Low_complexity Low_complexity 1 30 0 980 108 2 6 chr12 14221753 14221922 -130060567 - THE1C LTR MaLR -189 166 1 378 0 0 0 chr12 14222601 14222643 -130059846 + (TG)n Simple_repeat Simple_repeat 2 43 0 2471 97 44 36 chr12 14222912 14223273 -130059216 + THE1B LTR MaLR 1 364 0 201 329 12 0 chr12 14224063 14224145 -130058344 + (CACCAT)n Simple_repeat Simple_repeat 1 83 0 1742 189 96 23 chr12 14224846 14225242 -130057247 + MLT1C LTR MaLR 1 425 -42 1946 165 0 10 chr12 14226320 14226629 -130055860 - AluJo SINE Alu -6 306 1 308 205 12 72 chr12 14227296 14227379 -130055110 - L2 LINE L2 -10 3303 3226 21 36 0 0 chr12 14228198 14228226 -130054263 + AT_rich Low_complexity Low_complexity 1 28 0 326 286 109 26 chr12 14228384 14228650 -130053839 + L1ME3A LINE L1 2220 2507 -3639 770 118 0 0 chr12 14228726 14228828 -130053661 - U6 snRNA snRNA -5 102 1 504 293 100 20 chr12 14228834 14229234 -130053255 + L1ME3A LINE L1 2539 2970 -3176 476 232 61 67 chr12 14229235 14229399 -130053090 - MER63A DNA MER1_type -5 205 43 2983 284 100 14 chr12 14229434 14231039 -130051450 + L1ME3A LINE L1 2962 4704 -1442 329 259 84 23 chr12 14231056 14231187 -130051302 + L1ME3A LINE L1 4869 5007 -1139 1043 248 104 60 chr12 14231211 14231948 -130050541 + L1ME3A LINE L1 5174 5949 -221 447 294 247 9 chr12 14232462 14232782 -130049707 - L2 LINE L2 -6 3266 2871 187 295 49 16 chr12 14232965 14233026 -130049463 - L2 LINE L2 -10 3262 3200 480 253 34 13 chr12 14233589 14233741 -130048748 + MIR SINE MIR 38 192 -62 1843 117 19 0 chr12 14235313 14235569 -130046920 + AluSq SINE Alu 1 261 -52 288 53 0 0 chr12 14235583 14235621 -130046868 + (TG)n Simple_repeat Simple_repeat 1 38 0 2341 93 0 7 chr12 14236028 14236330 -130046159 - AluSc SINE Alu -9 300 1 213 275 43 0 chr12 14236896 14236965 -130045524 + MIR SINE MIR 104 175 -87 184 290 0 32 chr12 14236945 14237007 -130045482 + L2 LINE L2 3242 3301 -12 * 235 247 52 13 chr12 14237366 14237443 -130045046 - L2 LINE L2 -1 3312 3233 348 64 0 0 chr12 14238253 14238300 -130044189 + (TG)n Simple_repeat Simple_repeat 2 48 0 312 242 167 25 chr12 14238648 14238768 -130043721 - MIR SINE MIR -55 153 17 683 228 142 27 chr12 14238965 14239184 -130043305 + MIR SINE MIR 2 245 -17 318 233 116 0 chr12 14240340 14240426 -130042063 - MIR SINE MIR -76 186 91 200 209 134 15 chr12 14241281 14241348 -130041141 + L2 LINE L2 2889 2963 -350 262 226 220 30 chr12 14242087 14242255 -130040234 - MIR SINE MIR -62 200 1 279 315 72 55 chr12 14242265 14242446 -130040043 - L2 LINE L2 -21 3251 3068 1195 204 68 34 chr12 14243486 14243780 -130038709 + MER93b LTR ERV1 1 304 -69 194 184 92 53 chr12 14243988 14244064 -130038425 - MER5A DNA MER1_type -1 188 110 190 279 29 0 chr12 14244008 14244076 -130038413 + MER5A DNA MER1_type 33 102 -87 * 311 299 68 0 chr12 14246092 14246209 -130036280 + L1M4 LINE L1 4062 4186 -1960 899 139 0 22 chr12 14246209 14246346 -130036143 + FLAM_C SINE Alu 1 134 -9 2236 264 59 53 chr12 14246346 14246592 -130035897 + L1M4 LINE L1 4176 4419 -1727 1487 109 33 0 chr12 14246592 14246802 -130035687 + AluSg/x SINE Alu 83 299 -11 2236 264 59 53 chr12 14246802 14247767 -130034722 + L1M4 LINE L1 4419 5395 -751 212 311 104 9 chr12 14248227 14248333 -130034156 - L2 LINE L2 -8 3264 3149 2442 110 52 25 chr12 14249224 14249589 -130032900 - THE1C LTR MaLR 0 375 1 755 73 257 0 chr12 14249679 14249788 -130032701 - MER85 DNA T2_type 0 139 3 1985 140 13 13 chr12 14251640 14251947 -130030542 - AluSx SINE Alu -5 307 1 2975 223 115 43 chr12 14252245 14253402 -130029087 + L1MC4 LINE L1 6808 8042 0 593 213 148 35 chr12 14253582 14253784 -130028705 - MIR SINE MIR -11 251 27 2269 115 0 0 chr12 14253786 14254082 -130028407 - AluSx SINE Alu -16 296 1 634 265 18 84 chr12 14254827 14255006 -130027483 + MIR SINE MIR 1 166 -63 1852 175 83 35 chr12 14257208 14257556 -130024933 + MLT1A1 LTR MaLR 1 365 0 1348 148 49 9 chr12 14257908 14258131 -130024358 + AluSg/x SINE Alu 81 312 0 1377 168 0 50 chr12 14258355 14258593 -130023896 + Tigger5 DNA MER2_type 1 226 -2097 * 2803 152 50 12 chr12 14258576 14259056 -130023433 + Tigger5 DNA MER2_type 1826 2323 0 365 152 65 54 chr12 14259549 14259641 -130022848 + MLT1I LTR MaLR 68 160 -249 232 286 24 0 chr12 14259710 14259794 -130022695 + MLT1J2 LTR MaLR 365 450 0 188 228 130 54 chr12 14259833 14259925 -130022564 + L2 LINE L2 2685 2783 -531 6955 119 30 8 chr12 14262387 14264124 -130018365 - L1MA1 LINE L1 -4 6298 4525 446 272 56 44 chr12 14264241 14264421 -130018068 - MIR3 SINE MIR -23 185 4 827 206 120 5 chr12 14264570 14264754 -130017735 + MER3 DNA MER1_type 1 205 -4 304 289 48 0 chr12 14265243 14265326 -130017163 - L2 LINE L2 -1 3271 3185 1436 235 77 14 chr12 14265817 14266246 -130016243 - HsTC2 DNA Tc2 0 1900 1269 1336 267 42 25 chr12 14266259 14266739 -130015750 - HsTC2 DNA Tc2 -1410 488 1 302 244 199 15 chr12 14267133 14267264 -130015225 - L2 LINE L2 0 3313 3159 1111 262 93 21 chr12 14269203 14269284 -130013205 + MLT1C LTR MaLR 17 91 -376 1969 56 0 0 chr12 14269284 14269515 -130012974 + AluY SINE Alu 70 300 -11 1111 262 93 21 chr12 14269515 14269853 -130012636 + MLT1C LTR MaLR 91 466 -1 1462 230 75 107 chr12 14270376 14270936 -130011553 - MLT1F1 LTR MaLR 0 567 1 630 294 32 37 chr12 14271160 14271378 -130011111 + MIR SINE MIR 38 254 -8 497 352 65 51 chr12 14274013 14274398 -130008091 - L2 LINE L2 -446 2868 2473 935 174 26 62 chr12 14274398 14274593 -130007896 + MER5A DNA MER1_type 1 188 -1 497 352 65 51 chr12 14274593 14274713 -130007776 - L2 LINE L2 -841 2473 2356 652 202 0 0 chr12 14276184 14276293 -130006196 + AluJb SINE Alu 154 262 -50 359 258 23 154 chr12 14276889 14277110 -130005379 + MIR SINE MIR 59 250 -12 766 189 112 39 chr12 14277124 14277330 -130005159 + MIR SINE MIR 12 232 -30 256 289 44 59 chr12 14277527 14277662 -130004827 + MER5A DNA MER1_type 56 188 -1 257 328 63 32 chr12 14278113 14278302 -130004187 - L2 LINE L2 -527 2787 2593 2254 304 128 27 chr12 14278457 14280176 -130002313 - L2 LINE L2 -6 3307 1413 11186 194 38 25 chr12 14280193 14281132 -130001357 - L1MB3 LINE L1 -6 6410 5485 640 162 36 0 chr12 14281132 14281243 -130001246 - L1MC1 LINE L1 0 6333 6219 11186 194 38 25 chr12 14281243 14285594 -129996895 - L1MB3 LINE L1 -931 5485 976 2122 99 72 77 chr12 14285594 14285969 -129996520 + THE1C LTR MaLR 3 375 0 11186 194 38 25 chr12 14285969 14286477 -129996012 - L1MB3 LINE L1 -5440 976 476 240 59 0 0 chr12 14286577 14286611 -129995878 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1799 161 7 3 chr12 14286614 14286900 -129995589 - AluSx SINE Alu -25 287 1 14802 153 19 3 chr12 14286934 14290117 -129992372 - L1PA11 LINE L1 0 6174 2938 2584 183 62 7 chr12 14290117 14290566 -129991923 - L1MB3 LINE L1 -5909 475 2 740 175 15 44 chr12 14290574 14290711 -129991778 - FLAM_A SINE Alu 0 133 1 486 275 68 48 chr12 14290810 14291017 -129991472 - MIR SINE MIR 0 262 52 887 289 135 33 chr12 14291031 14291512 -129990977 - L2 LINE L2 -1988 1326 797 40 0 0 0 chr12 14292143 14292183 -129990306 + AT_rich Low_complexity Low_complexity 1 40 0 701 262 43 19 chr12 14292340 14292550 -129989939 + MER112 DNA MER1_type 6 220 -40 288 332 47 25 chr12 14293683 14293918 -129988571 - L2 LINE L2 -888 2426 2187 320 189 0 103 chr12 14295389 14295747 -129986742 + GA-rich Low_complexity Low_complexity 1 321 0 291 351 24 6 chr12 14295441 14295609 -129986880 + (GAATG)n Simple_repeat Simple_repeat 1 171 0 * 349 386 0 6 chr12 14295602 14295850 -129986639 + (GAGTG)n Simple_repeat Simple_repeat 1 246 0 414 299 0 17 chr12 14296000 14296117 -129986372 - L2 LINE L2 -1 3312 3198 540 308 48 0 chr12 14296126 14296334 -129986155 + MIR SINE MIR 40 257 -5 445 308 99 19 chr12 14296888 14297099 -129985390 + MIR SINE MIR 25 252 -10 2234 105 7 0 chr12 14297101 14297405 -129985084 - AluSx SINE Alu -1 311 6 885 247 135 29 chr12 14298376 14298761 -129983728 + L2 LINE L2 2887 3312 -1 181 270 70 30 chr12 14298957 14299057 -129983432 - L2 LINE L2 -190 3123 3020 207 298 142 52 chr12 14299254 14299563 -129982926 - L2 LINE L2 -557 2757 2421 184 286 13 26 chr12 14299818 14299895 -129982594 + MIR SINE MIR 88 163 -99 180 0 0 0 chr12 14301158 14301178 -129981311 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 384 254 91 48 chr12 14302249 14302414 -129980075 + MIR SINE MIR 41 212 -50 480 190 15 102 chr12 14302807 14302944 -129979545 + L2 LINE L2 3189 3313 0 31 58 0 0 chr12 14303216 14303268 -129979221 + AT_rich Low_complexity Low_complexity 1 52 0 481 256 100 0 chr12 14303987 14304147 -129978342 - LTR50 LTR ERVL -619 176 1 350 326 11 45 chr12 14304540 14304718 -129977771 + MIR SINE MIR 81 252 -10 320 271 226 28 chr12 14305072 14305249 -129977240 + MIR SINE MIR 48 259 -3 543 214 89 36 chr12 14306700 14306868 -129975621 + MER5B DNA MER1_type 2 178 0 1723 174 10 3 chr12 14307588 14307918 -129974571 + AluJb SINE Alu 5 312 0 837 215 92 33 chr12 14308710 14309101 -129973388 + L1MC5 LINE L1 7393 7806 -155 250 254 0 0 chr12 14310057 14310112 -129972377 + (CA)n Simple_repeat Simple_repeat 2 56 0 5581 267 140 23 chr12 14311593 14314509 -129967980 + L2 LINE L2 41 3296 -17 306 164 0 0 chr12 14316979 14317034 -129965455 + (TA)n Simple_repeat Simple_repeat 2 56 0 31 0 0 0 chr12 14318739 14318770 -129963719 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 14323143 14323164 -129959325 + AT_rich Low_complexity Low_complexity 1 21 0 209 386 33 26 chr12 14323164 14323317 -129959172 - L2 LINE L2 -14 3258 3105 210 334 168 14 chr12 14323819 14324625 -129957864 - L2 LINE L2 -788 2526 1597 292 343 29 0 chr12 14336319 14336459 -129946030 + GA-rich Low_complexity Low_complexity 1 144 0 2373 185 12 51 chr12 14338255 14338741 -129943748 + MLT1C LTR MaLR 1 467 0 237 167 0 0 chr12 14341019 14341073 -129941416 + GA-rich Low_complexity Low_complexity 1 54 0 750 258 21 42 chr12 14342028 14342221 -129940268 + MIR SINE MIR 18 207 -55 2382 72 0 0 chr12 14342221 14342511 -129939978 + AluY SINE Alu 1 290 -21 750 258 21 42 chr12 14342511 14342557 -129939932 + MIR SINE MIR 207 252 -10 318 341 61 12 chr12 14343102 14343266 -129939223 - MIR3 SINE MIR -25 183 12 28 29 0 0 chr12 14343717 14343752 -129938737 + AT_rich Low_complexity Low_complexity 1 35 0 1995 218 91 11 chr12 14343803 14344339 -129938150 + L1M4 LINE L1 4656 5234 -912 2004 146 0 7 chr12 14344428 14344766 -129937723 + AluJb SINE Alu 1 312 0 251 345 3 6 chr12 14344780 14344890 -129937599 + MIR SINE MIR 13 121 -87 21 36 0 0 chr12 14345475 14345503 -129936986 + AT_rich Low_complexity Low_complexity 1 28 0 1911 170 0 19 chr12 14345586 14345904 -129936585 - AluSx SINE Alu 0 312 1 218 298 58 19 chr12 14346031 14346135 -129936354 - MIR SINE MIR -117 145 38 286 281 74 30 chr12 14346782 14346917 -129935572 - L2 LINE L2 0 3313 3173 238 206 0 32 chr12 14346917 14346980 -129935509 + (TTCA)n Simple_repeat Simple_repeat 4 64 0 233 295 74 25 chr12 14346985 14347107 -129935382 - L2 LINE L2 -7 3306 3179 420 253 0 0 chr12 14347145 14347232 -129935257 - FLAM SINE Alu -17 126 40 2189 214 57 9 chr12 14347235 14347762 -129934727 + MLT1H1 LTR MaLR 4 555 0 544 300 33 33 chr12 14347768 14348011 -129934478 - L2 LINE L2 -164 3149 2907 838 251 57 16 chr12 14348360 14348607 -129933882 + MIR SINE MIR 6 262 0 249 180 0 0 chr12 14348610 14348660 -129933829 + (CAT)n Simple_repeat Simple_repeat 2 51 0 2021 217 69 11 chr12 14349783 14350249 -129932240 - L1ME1 LINE L1 -62 6104 5612 2246 134 0 0 chr12 14350679 14350978 -129931511 + AluSx SINE Alu 1 299 -13 277 355 11 21 chr12 14351002 14351095 -129931394 + MIR SINE MIR 19 110 -152 630 226 102 0 chr12 14352337 14352514 -129929975 - MIR SINE MIR -21 241 47 333 215 141 7 chr12 14353170 14353319 -129929170 + L2 LINE L2 2835 3003 -310 423 250 38 30 chr12 14353333 14353465 -129929024 + L2 LINE L2 3158 3290 -23 186 118 0 0 chr12 14353465 14353499 -129928990 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 326 229 90 16 chr12 14354587 14354709 -129927780 - MER103 DNA DNA -32 134 4 183 343 29 0 chr12 14354788 14354858 -129927631 - MIR SINE MIR -56 152 81 190 284 0 74 chr12 14354891 14354972 -129927517 - L2 LINE L2 -1 3312 3238 201 184 26 0 chr12 14355204 14355242 -129927247 - L2 LINE L2 -6 3266 3228 489 247 42 18 chr12 14355993 14356159 -129926330 - L2 LINE L2 0 3313 3144 2032 152 10 0 chr12 14356371 14356706 -129925783 - AluJb SINE Alu 0 338 1 503 30 0 242 chr12 14356931 14357030 -129925459 - MADE1 DNA Mariner -3 77 3 220 353 45 45 chr12 14357444 14357733 -129924756 + L3 LINE CR1 646 934 -643 530 168 10 0 chr12 14358090 14358191 -129924298 - MER53 DNA DNA -80 109 8 4467 64 4 20 chr12 14359273 14359833 -129922656 - L1PA8 LINE L1 0 6172 5622 661 233 35 6 chr12 14360422 14360594 -129921895 - MIR SINE MIR -7 255 79 233 298 140 18 chr12 14360571 14360685 -129921804 + MIR SINE MIR 87 214 -48 * 336 289 104 52 chr12 14361044 14361217 -129921272 - L2 LINE L2 -18 3254 3073 1681 185 28 71 chr12 14361234 14361629 -129920860 + MER83B LTR ERV1 1 378 0 7563 53 10 0 chr12 14362132 14363736 -129918753 + L1PA7 LINE L1 4525 6154 0 507 247 62 104 chr12 14366053 14366251 -129916238 + MIR SINE MIR 2 188 -74 4617 93 30 3 chr12 14366251 14366874 -129915615 + MER51C LTR ERV1 1 640 0 507 247 62 104 chr12 14366874 14366934 -129915555 + MIR SINE MIR 188 249 -13 201 147 0 0 chr12 14369243 14369277 -129913212 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 237 65 0 0 chr12 14369539 14369570 -129912919 + (TG)n Simple_repeat Simple_repeat 2 32 0 1117 210 98 88 chr12 14370202 14370659 -129911830 - MLT1C LTR MaLR 0 467 6 334 271 209 0 chr12 14372498 14372627 -129909862 + MIR SINE MIR 93 248 -14 235 261 0 14 chr12 14372656 14372725 -129909764 + (TAA)n Simple_repeat Simple_repeat 3 70 0 458 312 16 8 chr12 14372868 14372993 -129909496 + MIR SINE MIR 29 154 -108 250 365 10 19 chr12 14374332 14374436 -129908053 - L2 LINE L2 -217 3055 2953 279 0 0 0 chr12 14374572 14374603 -129907886 + (TC)n Simple_repeat Simple_repeat 2 32 0 288 0 0 0 chr12 14374604 14374636 -129907853 + (CA)n Simple_repeat Simple_repeat 2 33 0 2470 139 37 51 chr12 14375217 14375649 -129906840 - MSTB1 LTR MaLR -4 428 3 573 52 102 0 chr12 14376203 14376535 -129905954 + (TA)n Simple_repeat Simple_repeat 1 365 0 2621 47 0 0 chr12 14378543 14378843 -129903646 + AluY SINE Alu 1 300 -11 355 280 193 33 chr12 14379687 14379837 -129902652 - MER5B DNA MER1_type -3 175 2 369 309 65 16 chr12 14379838 14379961 -129902528 + MER5B DNA MER1_type 46 174 -4 264 372 25 40 chr12 14381726 14381925 -129900564 - L3 LINE CR1 -444 1133 938 282 323 126 0 chr12 14382419 14382586 -129899903 - MIR SINE MIR -73 189 2 510 286 136 28 chr12 14382651 14382864 -129899625 + MIR SINE MIR 21 256 -6 201 94 0 0 chr12 14383068 14383100 -129899389 + (A)n Simple_repeat Simple_repeat 1 32 0 300 322 125 7 chr12 14383293 14383445 -129899044 - MIR3 SINE MIR -20 188 19 397 352 28 22 chr12 14383766 14383948 -129898541 - MIR3 SINE MIR -7 201 19 766 234 62 4 chr12 14384932 14385158 -129897331 - L1ME3A LINE L1 -1 6169 5931 310 305 130 0 chr12 14385920 14386051 -129896438 - L2 LINE L2 -2 3270 3123 223 350 109 42 chr12 14387456 14387767 -129894722 + L2 LINE L2 2492 2823 -491 713 327 92 53 chr12 14387838 14388499 -129893990 + L3 LINE CR1 320 1080 -497 242 286 0 14 chr12 14388641 14388711 -129893778 - L2 LINE L2 -1 3271 3203 488 269 185 23 chr12 14388723 14388939 -129893550 - MIR SINE MIR -10 252 2 517 242 72 41 chr12 14389367 14389561 -129892928 - MER63A DNA MER1_type -10 200 1 213 315 0 0 chr12 14389661 14389734 -129892755 + MIR SINE MIR 68 140 -122 213 213 131 0 chr12 14389704 14389765 -129892724 + MIR3 SINE MIR 112 180 -28 264 30 0 0 chr12 14390659 14390692 -129891797 + (T)n Simple_repeat Simple_repeat 1 33 0 2155 168 36 36 chr12 14391610 14392002 -129890487 - MSTD LTR MaLR -4 392 1 248 267 47 12 chr12 14392228 14392314 -129890175 - L1ME3A LINE L1 -303 5818 5730 548 293 82 33 chr12 14392347 14392826 -129889663 - L1ME3A LINE L1 -751 5395 5158 272 169 0 108 chr12 14394499 14394564 -129887925 + MIR SINE MIR 72 129 -133 326 311 19 28 chr12 14395679 14395785 -129886704 + MIR SINE MIR 10 114 -148 201 121 0 0 chr12 14395856 14395889 -129886600 + (C)n Simple_repeat Simple_repeat 1 33 0 267 254 16 0 chr12 14396348 14396411 -129886078 + MLT1K LTR MaLR 522 585 -3 342 287 61 0 chr12 14396423 14396538 -129885951 + MIR SINE MIR 129 250 -12 377 240 0 0 chr12 14397037 14397112 -129885377 - MIR SINE MIR -184 78 4 202 307 172 17 chr12 14398455 14398693 -129883796 + L2 LINE L2 2600 2874 -440 395 332 46 98 chr12 14398730 14399209 -129883280 + L2 LINE L2 2817 3270 -2 326 276 41 24 chr12 14399272 14399395 -129883094 - MIR SINE MIR 0 262 138 567 257 120 68 chr12 14399465 14399874 -129882615 + MLT1H LTR MaLR 107 536 -13 1688 154 74 40 chr12 14399874 14400225 -129882264 - THE1C LTR MaLR -12 363 1 384 323 24 16 chr12 14400663 14400790 -129881699 - MIR SINE MIR -128 134 7 376 230 296 7 chr12 14401849 14401984 -129880505 + MER5B DNA MER1_type 3 176 -2 637 216 167 0 chr12 14402264 14402426 -129880063 + MER5A DNA MER1_type 1 189 0 243 373 59 25 chr12 14403204 14403322 -129879167 - L2 LINE L2 -19 3253 3132 1483 246 73 26 chr12 14403352 14403778 -129878711 - MLT1J1 LTR MaLR 0 446 1 1611 281 91 12 chr12 14404918 14405765 -129876724 - L2 LINE L2 -1 3312 2380 848 260 39 5 chr12 14405797 14406005 -129876484 + MIR SINE MIR 39 253 -9 527 310 75 19 chr12 14406001 14406214 -129876275 - L2 LINE L2 -900 2414 2190 * 279 257 168 18 chr12 14408106 14408219 -129874270 - MIR SINE MIR -113 149 20 280 343 102 6 chr12 14408463 14408629 -129873860 - L3b LINE CR1 -295 1288 1107 347 296 22 22 chr12 14408805 14408984 -129873505 + CT-rich Low_complexity Low_complexity 2 180 0 1132 161 0 0 chr12 14409157 14409325 -129873164 + FRAM SINE Alu 2 169 -7 243 0 0 0 chr12 14410124 14410151 -129872338 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1894 139 29 4 chr12 14410151 14410424 -129872065 - AluSx SINE Alu -32 280 1 501 373 18 9 chr12 14410544 14410761 -129871728 - L3 LINE CR1 -753 824 606 2015 127 3 7 chr12 14410957 14411275 -129871214 + AluSx SINE Alu 1 317 0 370 256 66 16 chr12 14411400 14411521 -129870968 + MIR SINE MIR 17 143 -65 365 332 100 14 chr12 14411758 14411978 -129870511 - MIR SINE MIR -18 244 6 15984 123 8 3 chr12 14412270 14414675 -129867814 - Tigger1 DNA MER2_type 0 2418 1 355 181 176 21 chr12 14415510 14415625 -129866864 + MLT1E LTR MaLR 45 160 -433 269 197 49 0 chr12 14415612 14415673 -129866816 + MLT1E LTR MaLR 121 184 -409 * 348 161 0 0 chr12 14415673 14415735 -129866754 + CT-rich Low_complexity Low_complexity 3 64 0 860 152 8 0 chr12 14415747 14415879 -129866610 - FLAM_C SINE Alu 0 133 1 1373 243 35 50 chr12 14415908 14416307 -129866182 + MLT1E LTR MaLR 201 593 0 189 320 0 40 chr12 14416380 14416455 -129866034 - MIR SINE MIR -103 105 34 214 338 101 36 chr12 14417284 14417423 -129865066 - L2 LINE L2 -10 3262 3115 540 311 81 5 chr12 14418038 14418260 -129864229 + MIR SINE MIR 6 244 -18 371 250 56 7 chr12 14418506 14418650 -129863839 + MER103 DNA DNA 6 156 -10 368 231 48 48 chr12 14418799 14418946 -129863543 + MIR3 SINE MIR 58 204 -4 545 257 68 99 chr12 14419674 14419997 -129862492 + L2 LINE L2 3001 3313 0 434 296 42 42 chr12 14420841 14420983 -129861506 + MIR SINE MIR 51 192 -70 280 282 126 0 chr12 14420999 14421102 -129861387 - L2 LINE L2 -1 3312 3197 240 339 11 85 chr12 14421126 14421303 -129861186 + L2 LINE L2 2896 3059 -213 354 329 41 70 chr12 14421448 14421691 -129860798 - L2 LINE L2 -213 3059 2824 450 336 168 23 chr12 14421972 14422705 -129859784 - L2 LINE L2 -530 2784 1946 654 248 33 33 chr12 14424618 14424828 -129857661 + MIR SINE MIR 23 232 -30 252 242 11 84 chr12 14425110 14425205 -129857284 + L2 LINE L2 3223 3310 -3 511 232 19 57 chr12 14425858 14426015 -129856474 - MIR3 SINE MIR -6 202 47 2255 91 3 7 chr12 14426975 14427271 -129855218 + AluSp SINE Alu 1 295 -18 300 213 25 0 chr12 14427308 14427388 -129855101 + L1ME4a LINE L1 5967 6048 -73 582 202 69 35 chr12 14428895 14429068 -129853421 - MLT1E LTR MaLR -2 591 413 496 244 111 70 chr12 14429076 14429347 -129853142 - MLT1E LTR MaLR -260 282 1 229 262 84 65 chr12 14429409 14429516 -129852973 + L2 LINE L2 3163 3271 -1 644 263 140 47 chr12 14430691 14430991 -129851498 - MER102a DNA MER1_type -1 329 2 667 240 6 44 chr12 14431574 14431757 -129850732 + L2 LINE L2 3137 3312 -1 697 188 109 0 chr12 14432048 14432176 -129850313 - MER5A DNA MER1_type -47 142 1 571 191 15 73 chr12 14432946 14433097 -129849392 - MIR SINE MIR -21 241 101 300 222 14 0 chr12 14433400 14433472 -129849017 + MER113 DNA MER1_type? 2 74 -447 212 217 0 29 chr12 14433709 14433778 -129848711 + T-rich Low_complexity Low_complexity 5 71 0 447 35 0 0 chr12 14434186 14434243 -129848246 + (TG)n Simple_repeat Simple_repeat 1 57 0 224 200 0 55 chr12 14434280 14434335 -129848154 + CT-rich Low_complexity Low_complexity 2 53 0 368 261 37 52 chr12 14434577 14434711 -129847778 + MIR SINE MIR 9 141 -67 28 0 0 0 chr12 14435608 14435636 -129846853 + AT_rich Low_complexity Low_complexity 1 28 0 456 293 37 30 chr12 14436612 14436912 -129845577 + L1ME4a LINE L1 5744 6045 -76 192 231 0 19 chr12 14437902 14437954 -129844535 + L2 LINE L2 3262 3312 -1 217 123 37 49 chr12 14437998 14438079 -129844410 + G-rich Low_complexity Low_complexity 3 82 0 849 275 73 31 chr12 14438138 14438465 -129844024 - L3b LINE CR1 -92 1491 1151 194 217 72 96 chr12 14438694 14438777 -129843712 - L2 LINE L2 -18 3254 3174 201 300 44 22 chr12 14440255 14440345 -129842144 - MIR SINE MIR -6 256 165 416 310 101 45 chr12 14440809 14441077 -129841412 - L2 LINE L2 -1 3312 3030 364 298 57 8 chr12 14441210 14441334 -129841155 - MIR3 SINE MIR -9 199 70 286 268 54 18 chr12 14442002 14442114 -129840375 - L2 LINE L2 -2 3311 3196 241 284 60 35 chr12 14442491 14442607 -129839882 - L2 LINE L2 -573 2741 2623 1860 184 0 7 chr12 14443129 14443434 -129839055 + AluJo SINE Alu 1 303 -9 280 349 13 0 chr12 14443821 14443970 -129838519 + MER103 DNA DNA 2 152 -14 648 267 141 0 chr12 14444108 14444299 -129838190 - MIR SINE MIR -10 252 35 23 0 0 0 chr12 14445120 14445143 -129837346 + AT_rich Low_complexity Low_complexity 1 23 0 1838 97 8 0 chr12 14445153 14445412 -129837077 + L1PA10 LINE L1 5905 6165 -3 535 291 11 28 chr12 14445443 14445622 -129836867 + MIR SINE MIR 77 252 -10 661 299 74 66 chr12 14446585 14446963 -129835526 - L3 LINE CR1 -4 1573 1193 2315 163 70 9 chr12 14447026 14447456 -129835033 + LTR32 LTR ERVL 15 470 -1 207 281 126 37 chr12 14447552 14447687 -129834802 - L3 LINE CR1 -363 1214 1068 384 213 25 31 chr12 14448008 14448168 -129834321 + GA-rich Low_complexity Low_complexity 2 160 0 651 222 12 12 chr12 14448239 14448401 -129834088 + MARNA DNA Mariner 363 524 -62 197 214 170 71 chr12 14448856 14448968 -129833521 + MIR SINE MIR 69 191 -71 441 0 0 0 chr12 14449488 14449537 -129832952 + (TG)n Simple_repeat Simple_repeat 2 50 0 455 324 88 0 chr12 14449620 14449790 -129832699 - MIR3 SINE MIR -4 204 20 324 307 175 15 chr12 14450303 14450440 -129832049 - MIR3 SINE MIR -46 162 4 192 307 13 40 chr12 14450581 14450656 -129831833 + MIR SINE MIR 79 151 -57 305 229 42 10 chr12 14450758 14450854 -129831635 - L1MA9 LINE L1 -40 6272 6174 690 244 29 80 chr12 14452384 14452594 -129829895 + MIR SINE MIR 2 196 -66 903 119 0 182 chr12 14452594 14452830 -129829659 + 7SK RNA RNA 1 193 0 690 244 29 80 chr12 14452830 14452894 -129829595 + MIR SINE MIR 196 262 0 1737 177 92 13 chr12 14455867 14456257 -129826232 + MSTB1 LTR MaLR 12 432 0 254 306 157 39 chr12 14456326 14456663 -129825826 + L2 LINE L2 1974 2350 -964 208 200 158 84 chr12 14457035 14457130 -129825359 - MIR SINE MIR -12 250 149 217 341 23 23 chr12 14457267 14457355 -129825134 - MIR SINE MIR -171 91 4 391 190 0 38 chr12 14458362 14458441 -129824048 + MIR SINE MIR 187 262 0 338 61 20 0 chr12 14459332 14459381 -129823108 + (CA)n Simple_repeat Simple_repeat 1 50 0 198 0 0 0 chr12 14459425 14459447 -129823042 + (CA)n Simple_repeat Simple_repeat 1 22 0 23 68 0 0 chr12 14459496 14459540 -129822949 + AT_rich Low_complexity Low_complexity 1 44 0 3298 153 23 28 chr12 14461433 14461807 -129820682 + MER6A DNA MER2_type 1 372 -493 2440 90 3 0 chr12 14461807 14462119 -129820370 - AluSp SINE Alu 0 313 1 3298 153 23 28 chr12 14462119 14462352 -129820137 + MER6A DNA MER2_type 372 605 0 27 49 0 0 chr12 14462403 14462444 -129820045 + AT_rich Low_complexity Low_complexity 1 41 0 242 293 121 7 chr12 14462634 14462774 -129819715 - MER5B DNA MER1_type -19 159 4 246 233 83 0 chr12 14463408 14463468 -129819021 - L2 LINE L2 -5 3308 3244 415 245 64 28 chr12 14463527 14463670 -129818819 - MIR3 SINE MIR -46 162 12 423 0 0 0 chr12 14463708 14463755 -129818734 + (TA)n Simple_repeat Simple_repeat 2 48 0 2179 112 0 0 chr12 14467739 14468034 -129814455 - AluSx SINE Alu -17 295 1 2189 113 3 3 chr12 14468645 14468938 -129813551 - AluSg SINE Alu -17 293 1 415 221 14 114 chr12 14469443 14469583 -129812906 + MLT1G1 LTR MaLR 9 134 -421 705 302 133 7 chr12 14469595 14469896 -129812593 + MLT1G1 LTR MaLR 255 593 -2 1868 153 18 49 chr12 14469953 14470340 -129812149 - THE1C LTR MaLR 0 375 1 245 344 16 62 chr12 14470502 14470630 -129811859 - L2 LINE L2 -4 3268 3147 468 285 32 19 chr12 14471965 14472123 -129810366 + MER91B DNA MER1_type 19 178 -12 302 252 148 0 chr12 14472660 14472795 -129809694 - L1ME LINE L1 -295 5826 5672 425 235 22 44 chr12 14473748 14473884 -129808605 + MIR SINE MIR 130 262 0 195 254 36 18 chr12 14474168 14474223 -129808266 + L2 LINE L2 3201 3256 -16 765 322 70 23 chr12 14474788 14475173 -129807316 + L3b LINE CR1 1103 1505 -78 204 355 0 16 chr12 14475709 14475771 -129806718 + L2 LINE L2 3005 3065 -207 243 200 75 50 chr12 14477328 14477408 -129805081 - MIR SINE MIR -81 181 100 213 227 288 38 chr12 14477664 14477796 -129804693 - MIR SINE MIR -14 248 84 433 211 88 88 chr12 14477870 14478017 -129804472 - L2 LINE L2 -1 3312 3166 225 331 15 15 chr12 14478091 14478221 -129804268 + L1ME LINE L1 466 595 -5935 1160 230 61 18 chr12 14478265 14478657 -129803832 + L1ME LINE L1 1009 1417 -5123 288 234 11 53 chr12 14478665 14478759 -129803730 + LTR50 LTR ERVL 489 578 -217 2078 189 25 96 chr12 14478856 14479258 -129803231 + L1ME2 LINE L1 5523 5863 -301 11809 33 1 1 chr12 14479258 14481441 -129801048 + L1PA4 LINE L1 3968 6152 -3 2078 189 25 96 chr12 14481441 14481682 -129800807 + L1ME2 LINE L1 5863 6120 -44 496 224 0 42 chr12 14483786 14483929 -129798560 - L1PB4 LINE L1 0 6156 6020 228 212 15 30 chr12 14484126 14484192 -129798297 + (ATG)n Simple_repeat Simple_repeat 1 65 0 295 271 0 0 chr12 14484571 14484641 -129797848 + (TGAA)n Simple_repeat Simple_repeat 1 70 0 209 379 24 40 chr12 14485161 14485285 -129797204 + L2 LINE L2 3148 3269 -3 216 228 18 0 chr12 14485634 14485691 -129796798 + GA-rich Low_complexity Low_complexity 3 60 0 280 298 74 88 chr12 14486070 14486118 -129796371 - MIR SINE MIR -21 241 194 324 0 0 0 chr12 14486118 14486154 -129796335 + (TG)n Simple_repeat Simple_repeat 2 37 0 280 298 74 88 chr12 14486154 14486320 -129796169 - MIR SINE MIR -68 194 30 282 218 18 0 chr12 14486599 14486654 -129795835 + L2 LINE L2 3211 3266 -6 2569 319 125 41 chr12 14489881 14491837 -129790652 - L2 LINE L2 -5 3308 1178 1382 25 0 0 chr12 14492191 14492351 -129790138 - L1PA7 LINE L1 0 6154 5995 292 331 19 0 chr12 14493709 14493863 -129788626 + LTR16C LTR ERVL 286 442 -49 259 219 37 24 chr12 14494323 14494405 -129788084 + GA-rich Low_complexity Low_complexity 3 85 0 28 0 0 0 chr12 14495277 14495305 -129787184 + AT_rich Low_complexity Low_complexity 1 28 0 2219 112 10 0 chr12 14495305 14495599 -129786890 + AluSq SINE Alu 2 298 -15 275 65 22 0 chr12 14495599 14495645 -129786844 + (TA)n Simple_repeat Simple_repeat 1 47 0 1927 75 11 4 chr12 14495722 14495987 -129786502 - L1PB1 LINE L1 -1 6150 5884 431 221 24 144 chr12 14495992 14496200 -129786289 - MIR SINE MIR -64 198 16 418 352 90 7 chr12 14496197 14496342 -129786147 - MIR3 SINE MIR -36 172 16 * 308 311 133 15 chr12 14497076 14497211 -129785278 + L2 LINE L2 3122 3272 0 216 111 0 0 chr12 14497775 14497811 -129784678 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 24 0 0 0 chr12 14499033 14499057 -129783432 + AT_rich Low_complexity Low_complexity 1 24 0 444 308 47 6 chr12 14499451 14499620 -129782869 - MIR SINE MIR -29 233 58 180 317 43 86 chr12 14499906 14500231 -129782258 + L2 LINE L2 1948 2258 -1056 2119 87 0 8 chr12 14500385 14500682 -129781807 + AluY SINE Alu 17 311 0 188 343 29 14 chr12 14501204 14501274 -129781215 - MIR SINE MIR -55 153 83 491 311 15 0 chr12 14501923 14502058 -129780431 - L2 LINE L2 0 3272 3136 360 336 24 28 chr12 14502080 14502291 -129780198 - L2 LINE L2 -767 2547 2338 190 341 23 34 chr12 14502844 14502932 -129779557 - L3 LINE CR1 -3 1574 1488 * 441 243 16 68 chr12 14502931 14503067 -129779422 - MIR SINE MIR -64 144 1 377 335 69 35 chr12 14503786 14503989 -129778500 - L2 LINE L2 -173 3099 2890 2193 98 16 32 chr12 14505794 14506110 -129776379 + AluSq SINE Alu 1 311 -2 2366 97 0 0 chr12 14506262 14506562 -129775927 - AluY SINE Alu -11 300 1 490 266 0 73 chr12 14507812 14508004 -129774485 + MER5B DNA MER1_type 1 178 0 2384 82 23 0 chr12 14508150 14508454 -129774035 + AluSp SINE Alu 1 311 -2 194 191 88 73 chr12 14509106 14509174 -129773315 - L3 LINE CR1 -1135 442 374 189 0 0 0 chr12 14510090 14510111 -129772378 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2040 83 41 8 chr12 14510113 14510379 -129772110 - AluSg1 SINE Alu -32 277 3 1606 163 53 23 chr12 14510595 14510896 -129771593 - AluJb SINE Alu 0 312 3 2181 134 0 0 chr12 14511483 14511782 -129770707 - AluSx SINE Alu -13 299 1 915 259 92 45 chr12 14511782 14512118 -129770371 + MLT1J LTR MaLR 58 409 -102 302 283 38 94 chr12 14514563 14514775 -129767714 + MIR3 SINE MIR 3 202 -6 646 209 121 70 chr12 14514961 14515234 -129767255 - L2 LINE L2 -5 3308 3022 2418 152 49 2 chr12 14515679 14516087 -129766402 + MSTB1 LTR MaLR 1 427 -5 252 338 0 0 chr12 14516119 14516196 -129766293 + GA-rich Low_complexity Low_complexity 2 78 0 936 128 43 32 chr12 14517845 14518032 -129764457 + MER53 DNA DNA 1 189 0 203 323 71 10 chr12 14519822 14519921 -129762568 - L2 LINE L2 -32 3281 3177 849 363 100 26 chr12 14520133 14521012 -129761477 - L2 LINE L2 -341 2973 2030 21 0 0 0 chr12 14521232 14521253 -129761236 + AT_rich Low_complexity Low_complexity 1 21 0 306 250 36 79 chr12 14521439 14521579 -129760910 + HAL1b LINE L1 1193 1326 -22 592 313 39 10 chr12 14521983 14522191 -129760298 + MIR SINE MIR 46 259 -3 26 0 0 0 chr12 14523107 14523133 -129759356 + AT_rich Low_complexity Low_complexity 1 26 0 673 204 36 7 chr12 14523236 14523373 -129759116 - MER46C DNA MER2_type -118 220 80 234 240 0 0 chr12 14523373 14523423 -129759066 + (CA)n Simple_repeat Simple_repeat 2 51 0 1509 196 65 3 chr12 14524790 14525081 -129757408 + MLT1A1 LTR MaLR 3 311 -54 2147 89 4 0 chr12 14525091 14525361 -129757128 - AluSg1 SINE Alu -34 275 5 275 175 211 0 chr12 14525365 14525422 -129757067 + MLT1A1 LTR MaLR 297 365 0 1100 333 25 7 chr12 14526992 14527395 -129755094 + LTR16A LTR ERVL 33 442 -8 645 309 80 34 chr12 14527423 14527747 -129754742 + L3 LINE CR1 1216 1554 -23 2355 100 0 10 chr12 14528050 14528360 -129754129 - AluSc SINE Alu -2 307 1 729 242 61 9 chr12 14528501 14528732 -129753757 + L2 LINE L2 1748 1990 -1324 889 254 107 70 chr12 14528732 14529380 -129753109 + L2 LINE L2 2617 3299 -14 2348 88 0 0 chr12 14531060 14531354 -129751135 - AluY SINE Alu -17 294 1 405 281 31 119 chr12 14534370 14534697 -129747792 - L3b LINE CR1 -118 1465 1168 295 312 129 6 chr12 14534699 14534869 -129747620 - MIR SINE MIR -9 253 63 189 162 0 0 chr12 14534927 14534964 -129747525 - L3b LINE CR1 -424 1159 1123 214 298 94 47 chr12 14535634 14535805 -129746684 - L3 LINE CR1 -1134 443 265 2322 62 3 13 chr12 14536026 14536331 -129746158 + AluY SINE Alu 1 302 -9 2262 82 3 0 chr12 14537805 14538114 -129744375 + AluY SINE Alu 1 310 0 629 40 0 0 chr12 14539734 14539810 -129742679 - L1PA8A LINE L1 -142 5989 5914 232 186 0 23 chr12 14539807 14539850 -129742639 + L1PA8A LINE L1 5853 5894 -260 * 2659 127 6 0 chr12 14540048 14540410 -129742079 + THE1B LTR MaLR 1 364 0 523 317 79 5 chr12 14540541 14540743 -129741746 + MIR SINE MIR 20 236 -26 255 140 0 0 chr12 14544031 14544081 -129738408 + (ATG)n Simple_repeat Simple_repeat 2 51 0 465 304 121 19 chr12 14544345 14544552 -129737937 + MIR SINE MIR 22 249 -13 314 315 127 5 chr12 14544709 14544907 -129737582 - L1MC/D LINE L1 -637 5484 5341 4420 95 31 0 chr12 14544911 14545492 -129736997 + L1PA11 LINE L1 5576 6174 0 21 36 0 0 chr12 14545906 14545934 -129736555 + AT_rich Low_complexity Low_complexity 1 28 0 2154 114 17 0 chr12 14548097 14548395 -129734094 - AluSx SINE Alu -9 303 1 1464 204 32 3 chr12 14548487 14548800 -129733689 - MER33 DNA MER1_type -2 322 1 546 273 137 19 chr12 14548801 14549006 -129733483 + MIR SINE MIR 34 262 0 955 326 176 30 chr12 14550054 14550959 -129731530 + L3 LINE CR1 436 1558 -19 210 184 0 20 chr12 14551349 14551398 -129731091 + CT-rich Low_complexity Low_complexity 2 49 0 225 0 0 0 chr12 14552483 14552508 -129729981 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2662 55 0 3 chr12 14552993 14553305 -129729184 + AluY SINE Alu 1 311 0 188 406 16 0 chr12 14553321 14553385 -129729104 + L2 LINE L2 3115 3179 -93 1954 200 56 70 chr12 14553543 14554059 -129728430 + MLT1H LTR MaLR 41 549 0 195 346 74 56 chr12 14554287 14554625 -129727864 + L2 LINE L2 2627 2970 -344 401 243 54 127 chr12 14554705 14554964 -129727525 - MIR SINE MIR 0 262 23 292 274 44 53 chr12 14555009 14555122 -129727367 - MIR SINE MIR -81 127 16 233 297 59 20 chr12 14557527 14557628 -129724861 - MIR3 SINE MIR -6 202 98 390 316 23 18 chr12 14558616 14558787 -129723702 + MIR SINE MIR 91 262 0 2308 51 44 7 chr12 14560233 14560527 -129721962 + AluY SINE Alu 1 305 -6 1651 211 52 0 chr12 14560738 14561146 -129721343 - L1MA4 LINE L1 -5 6295 5867 2009 113 0 52 chr12 14562176 14562485 -129720004 + AluSg SINE Alu 1 293 -17 1696 157 44 63 chr12 14562971 14563353 -129719136 + AluJb SINE Alu 1 376 0 361 291 38 51 chr12 14564498 14564598 -129717891 + MIR SINE MIR 103 202 -60 4276 66 2 0 chr12 14564598 14565146 -129717343 + L1PA6 LINE L1 5606 6154 0 361 291 38 51 chr12 14565146 14565203 -129717286 + MIR SINE MIR 202 258 -4 533 296 62 6 chr12 14565795 14565957 -129716532 - MIR3 SINE MIR -24 184 14 2126 136 48 11 chr12 14566097 14566449 -129716040 - MLT1A1 LTR MaLR 0 365 1 187 331 48 48 chr12 14567003 14567127 -129715362 + MER5A DNA MER1_type 43 166 -23 * 380 257 14 0 chr12 14567078 14567152 -129715337 - MER5A DNA MER1_type -105 84 10 284 344 62 20 chr12 14567437 14567632 -129714857 + MIR SINE MIR 59 261 -1 220 316 26 13 chr12 14569469 14569545 -129712944 - L3 LINE CR1 -402 1175 1099 221 338 120 23 chr12 14571045 14571178 -129711311 - L2 LINE L2 0 3313 3168 482 347 11 4 chr12 14571382 14571644 -129710845 + L1ME LINE L1 5509 5772 -349 21 36 0 0 chr12 14571721 14571749 -129710740 + AT_rich Low_complexity Low_complexity 1 28 0 2622 135 7 27 chr12 14571942 14572385 -129710104 + Tigger2a DNA MER2_type 1 434 0 383 319 212 8 chr12 14573647 14573888 -129708601 + L2 LINE L2 3021 3310 -3 269 293 20 50 chr12 14574208 14574307 -129708182 - MIR SINE MIR -93 169 74 5748 139 23 6 chr12 14574649 14575961 -129706528 - L1MA8 LINE L1 0 6291 4960 220 324 0 0 chr12 14576238 14576309 -129706180 + MIR3 SINE MIR 138 208 0 234 0 0 0 chr12 14576761 14576787 -129705702 + (T)n Simple_repeat Simple_repeat 1 26 0 579 15 0 0 chr12 14577503 14577570 -129704919 - L1PA5 LINE L1 -263 5891 5825 1898 51 0 0 chr12 14577570 14577804 -129704685 + L1PA5 LINE L1 5917 6150 -4 204 40 0 0 chr12 14577804 14577829 -129704660 + (TA)n Simple_repeat Simple_repeat 1 25 0 794 198 171 0 chr12 14578063 14578250 -129704239 - MER20 DNA MER1_type 0 219 1 314 322 101 35 chr12 14578349 14578576 -129703913 + MIR SINE MIR 20 261 -1 361 308 148 38 chr12 14578790 14579255 -129703234 + L2 LINE L2 2607 3135 -178 979 119 0 0 chr12 14579271 14579405 -129703084 - AluSg/x SINE Alu -16 296 163 284 274 169 8 chr12 14579428 14579552 -129702937 + L2 LINE L2 3167 3310 -3 231 343 57 29 chr12 14579699 14579804 -129702685 + L2 LINE L2 3125 3232 -40 1428 176 13 83 chr12 14580328 14580630 -129701859 + AluJo SINE Alu 1 281 -31 2218 89 13 20 chr12 14581982 14582286 -129700203 - AluSg SINE Alu -8 302 1 358 254 246 0 chr12 14582579 14582721 -129699768 - MIR SINE MIR 0 262 86 1092 169 9 28 chr12 14583695 14583908 -129698581 + MER3 DNA MER1_type 1 209 0 251 200 31 15 chr12 14584079 14584144 -129698345 - MER116 DNA Mariner -12 68 3 202 224 20 0 chr12 14584221 14584270 -129698219 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 1823 168 33 48 chr12 14588024 14588418 -129694071 + MLT1B LTR MaLR 3 390 0 809 273 3 72 chr12 14588541 14588889 -129693600 - MER46C DNA MER2_type -14 324 1 381 276 48 0 chr12 14589426 14589531 -129692958 - L2 LINE L2 -4 3309 3200 246 331 121 16 chr12 14589614 14589738 -129692751 + L2 LINE L2 3136 3272 0 427 322 64 75 chr12 14589816 14590339 -129692150 + L2 LINE L2 2563 3089 -183 219 287 46 58 chr12 14590740 14590827 -129691662 - L2 LINE L2 -39 3233 3148 6471 241 55 24 chr12 14591928 14593624 -129688865 - L1MEc LINE L1 -1182 5033 3248 2536 65 0 10 chr12 14593624 14593930 -129688559 + AluSg SINE Alu 1 303 -7 6471 241 55 24 chr12 14593930 14594501 -129687988 - L1MEc LINE L1 -2967 3248 2696 238 26 51 0 chr12 14594507 14594546 -129687943 + (TA)n Simple_repeat Simple_repeat 2 42 0 339 25 0 0 chr12 14594548 14594588 -129687901 + (TG)n Simple_repeat Simple_repeat 1 40 0 2079 114 0 0 chr12 14594588 14594868 -129687621 - AluSq SINE Alu -33 280 1 1400 253 91 112 chr12 14594874 14595240 -129687249 - L1MEc LINE L1 -4009 2387 2015 2244 108 7 0 chr12 14595240 14595535 -129686954 + AluSp SINE Alu 1 297 -16 1400 253 91 112 chr12 14595535 14596751 -129685738 - L1MEc LINE L1 -4381 2015 868 2154 104 0 0 chr12 14596751 14597031 -129685458 - AluSg SINE Alu -30 280 1 1400 253 91 112 chr12 14597031 14597847 -129684642 - L1MEc LINE L1 -5528 868 37 780 297 99 37 chr12 14597872 14598441 -129684048 + L2 LINE L2 2709 3305 -8 2295 136 64 33 chr12 14599943 14600362 -129682127 + MSTB1 LTR MaLR 1 432 0 470 250 83 0 chr12 14601514 14601622 -129680867 + L2 LINE L2 3146 3262 -10 744 251 116 13 chr12 14601623 14602002 -129680487 - L1ME4a LINE L1 -219 5902 5485 290 243 63 36 chr12 14602786 14602897 -129679592 - MIR SINE MIR -62 146 33 2338 85 0 22 chr12 14603072 14603388 -129679101 - AluY SINE Alu -2 309 1 812 214 17 17 chr12 14603846 14604024 -129678465 + MER5B DNA MER1_type 1 178 0 231 36 0 0 chr12 14604823 14604851 -129677638 + (A)n Simple_repeat Simple_repeat 1 28 0 341 242 150 17 chr12 14606611 14606731 -129675758 - MIR SINE MIR -112 150 15 383 260 4 13 chr12 14608614 14608723 -129673766 - MIR SINE MIR -61 147 44 451 280 48 0 chr12 14609483 14609608 -129672881 + MIR SINE MIR 45 175 -87 400 290 66 2 chr12 14610235 14610372 -129672117 - MIR SINE MIR -63 145 3 193 217 188 14 chr12 14611837 14611906 -129670583 + MIR SINE MIR 175 255 -7 231 36 0 0 chr12 14611963 14611991 -129670498 + (T)n Simple_repeat Simple_repeat 1 28 0 327 106 0 188 chr12 14612045 14612078 -129670411 - L1PA10 LINE L1 0 6168 6159 260 27 27 0 chr12 14612078 14612115 -129670374 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 327 106 0 188 chr12 14612115 14612166 -129670323 - L1PA10 LINE L1 -9 6159 6100 230 93 0 23 chr12 14612272 14612315 -129670174 + (CA)n Simple_repeat Simple_repeat 1 42 0 31 26 0 0 chr12 14612432 14612470 -129670019 + AT_rich Low_complexity Low_complexity 1 38 0 283 342 34 2 chr12 14613665 14613795 -129668694 + MIR SINE MIR 25 123 -85 561 224 35 0 chr12 14614634 14614750 -129667739 + MIR3 SINE MIR 85 204 -4 394 292 66 51 chr12 14615132 14615269 -129667220 - MIR3 SINE MIR -55 153 15 23 0 0 0 chr12 14615384 14615407 -129667082 + AT_rich Low_complexity Low_complexity 1 23 0 373 250 71 9 chr12 14616047 14616159 -129666330 - MIR SINE MIR -105 157 39 247 206 0 41 chr12 14616191 14616264 -129666225 + L1MD2 LINE L1 6289 6358 -1 218 354 7 14 chr12 14616663 14616810 -129665679 + GA-rich Low_complexity Low_complexity 2 147 0 369 280 80 40 chr12 14619836 14620036 -129662453 + MIR SINE MIR 3 210 -52 235 374 0 11 chr12 14620553 14620644 -129661845 + MER5B DNA MER1_type 37 126 -52 282 303 82 62 chr12 14621623 14621867 -129660622 - MIR SINE MIR -12 250 2 778 278 155 30 chr12 14621984 14622383 -129660106 + L2 LINE L2 2863 3311 -2 459 308 31 15 chr12 14622906 14623036 -129659453 - L2 LINE L2 0 3272 3141 1984 157 0 0 chr12 14623282 14623588 -129658901 + AluSg SINE Alu 2 307 -3 1960 142 6 25 chr12 14623980 14624298 -129658191 + AluSx SINE Alu 1 312 0 517 250 37 15 chr12 14624327 14624463 -129658026 - MIR SINE MIR -107 155 17 1238 208 124 44 chr12 14624472 14624900 -129657589 - MLT1C LTR MaLR 0 467 6 346 346 112 32 chr12 14624963 14625507 -129656982 - L2 LINE L2 -35 3237 2643 525 324 21 28 chr12 14625685 14625972 -129656517 + L2 LINE L2 2034 2318 -996 250 265 110 31 chr12 14626078 14626302 -129656187 - L2 LINE L2 -1331 1983 1665 247 371 0 21 chr12 14626325 14626421 -129656068 - MER20B DNA MER1_type -604 179 85 300 70 0 0 chr12 14626421 14626464 -129656025 + (CA)n Simple_repeat Simple_repeat 1 43 0 247 371 0 21 chr12 14626464 14626507 -129655982 - MER20B DNA MER1_type -698 85 43 302 333 33 0 chr12 14627136 14627256 -129655233 + MIR SINE MIR 91 214 -48 381 363 144 0 chr12 14628079 14628280 -129654209 - MIR SINE MIR -12 250 21 435 320 26 13 chr12 14628701 14628854 -129653635 + MIR SINE MIR 34 188 -74 2147 119 16 0 chr12 14629372 14629675 -129652814 - AluSx SINE Alu -4 308 1 272 337 35 13 chr12 14630267 14630385 -129652104 + MIR SINE MIR 2 119 -89 429 287 94 17 chr12 14630970 14631151 -129651338 - MIR SINE MIR -50 212 18 183 42 0 0 chr12 14631716 14631740 -129650749 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 747 280 37 18 chr12 14632482 14632700 -129649789 + MIR SINE MIR 21 242 -20 847 148 94 0 chr12 14633845 14633994 -129648495 + MER5B DNA MER1_type 1 163 -15 2234 117 0 0 chr12 14634407 14634707 -129647782 + AluSq SINE Alu 7 306 -7 259 313 44 73 chr12 14635890 14636078 -129646411 - MIR SINE MIR -65 197 23 627 157 0 26 chr12 14636499 14636614 -129645875 + L1PB4 LINE L1 6043 6154 -2 362 356 38 6 chr12 14636618 14636778 -129645711 - MIR SINE MIR -12 250 86 225 0 0 0 chr12 14637507 14637532 -129644957 + (CA)n Simple_repeat Simple_repeat 2 26 0 297 75 0 0 chr12 14638270 14638310 -129644179 + (T)n Simple_repeat Simple_repeat 1 40 0 417 103 147 0 chr12 14638493 14638561 -129643928 + MER116 DNA Mariner 1 78 -2 497 286 120 26 chr12 14638566 14638758 -129643731 - MIR SINE MIR -33 229 20 231 36 0 0 chr12 14638792 14638820 -129643669 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 298 233 111 89 chr12 14638832 14639012 -129643477 + MIR SINE MIR 37 220 -42 302 269 0 43 chr12 14639895 14639988 -129642501 + L1ME LINE L1 5507 5595 -526 228 244 117 44 chr12 14639987 14640167 -129642322 + L1M4 LINE L1 2335 2527 -3619 * 676 263 183 44 chr12 14640267 14640856 -129641633 + L1M4 LINE L1 2676 3359 -2787 1264 122 0 6 chr12 14641271 14641522 -129640967 + AluSc SINE Alu 2 295 -14 369 243 39 25 chr12 14641538 14641733 -129640756 + L1M4 LINE L1 3765 3955 -2191 408 283 97 27 chr12 14641838 14642096 -129640393 + L1M4 LINE L1 4411 4686 -1460 22 35 0 0 chr12 14642176 14642205 -129640284 + AT_rich Low_complexity Low_complexity 1 29 0 1256 111 5 15 chr12 14644014 14644212 -129638277 - L1PA11 LINE L1 -60 6114 5919 616 40 0 0 chr12 14644212 14644284 -129638205 + L1PA11 LINE L1 6100 6173 -1 2341 87 0 10 chr12 14644295 14644604 -129637885 + AluSc SINE Alu 1 306 -3 249 322 116 10 chr12 14644742 14644903 -129637586 + MIR SINE MIR 20 203 -59 * 265 308 68 38 chr12 14644886 14645019 -129637470 - L2 LINE L2 -4 3309 3173 434 282 72 36 chr12 14645196 14645391 -129637098 + MIR SINE MIR 21 222 -40 330 253 81 50 chr12 14645852 14645951 -129636538 + L2 LINE L2 3171 3272 0 306 313 263 19 chr12 14646639 14646799 -129635690 + MIR3 SINE MIR 3 201 -7 1169 287 39 48 chr12 14646801 14646832 -129635657 + LTR33 LTR ERVL 12 42 -479 2301 107 0 3 chr12 14646832 14647140 -129635349 + AluSx SINE Alu 1 307 -5 1169 287 39 48 chr12 14647140 14647623 -129634866 + LTR33 LTR ERVL 42 521 0 1902 164 7 0 chr12 14648156 14648454 -129634035 - MER7A DNA MER2_type 0 346 49 192 77 0 0 chr12 14650046 14650072 -129632417 + (TG)n Simple_repeat Simple_repeat 1 26 0 354 271 53 30 chr12 14651559 14651692 -129630797 + MIR SINE MIR 81 216 -46 3148 212 85 48 chr12 14651814 14653397 -129629092 - L1ME1 LINE L1 -5 6161 4535 1491 219 104 15 chr12 14653399 14653860 -129628629 - L1ME1 LINE L1 -1709 4437 3936 409 366 27 11 chr12 14654901 14655087 -129627402 + MER5A DNA MER1_type 1 189 0 245 232 285 20 chr12 14655174 14655325 -129627164 - MER112 DNA MER1_type -66 194 4 995 235 24 36 chr12 14655896 14656147 -129626342 - MIR SINE MIR -10 252 5 3630 131 75 82 chr12 14657206 14657503 -129624986 - Tigger3(Golem) DNA MER2_type 0 3029 2732 2218 114 0 0 chr12 14657503 14657800 -129624689 + AluSx SINE Alu 1 297 -15 3630 131 75 82 chr12 14657800 14658259 -129624230 - Tigger3(Golem) DNA MER2_type -297 2732 2278 615 119 0 136 chr12 14658247 14658365 -129624124 - Tigger3(Golem) DNA MER2_type -2918 111 10 * 262 244 158 24 chr12 14658519 14658646 -129623843 - MIR SINE MIR -21 241 98 207 171 0 0 chr12 14660817 14660852 -129621637 + (CACCAT)n Simple_repeat Simple_repeat 1 35 0 202 258 150 33 chr12 14660913 14661033 -129621456 - L2 LINE L2 -8 3305 3172 * 218 345 0 12 chr12 14661024 14661165 -129621324 - MIR SINE MIR -3 259 53 21 36 0 0 chr12 14661430 14661458 -129621031 + AT_rich Low_complexity Low_complexity 1 28 0 1145 267 46 20 chr12 14662971 14663709 -129618780 + L1ME4a LINE L1 5330 6119 -2 444 257 21 86 chr12 14664150 14664290 -129618199 - MIR3 SINE MIR -16 192 62 796 241 41 20 chr12 14665869 14666064 -129616425 + MIR SINE MIR 63 261 -1 432 302 16 8 chr12 14666645 14666771 -129615718 + MIR3 SINE MIR 75 201 -7 217 140 20 40 chr12 14666811 14666861 -129615628 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 398 65 0 16 chr12 14666988 14667087 -129615402 + L1PA2 LINE L1 6089 6155 0 435 232 27 19 chr12 14667332 14667520 -129614969 - MIR SINE MIR 0 262 14 2224 95 14 0 chr12 14667681 14667965 -129614524 + AluSp SINE Alu 1 288 -25 225 132 0 0 chr12 14667982 14668020 -129614469 + (CTA)n Simple_repeat Simple_repeat 3 40 0 221 283 87 22 chr12 14668078 14668170 -129614319 - MIR SINE MIR -116 146 49 189 0 0 0 chr12 14668291 14668312 -129614177 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2219 104 0 3 chr12 14669243 14669540 -129612949 + AluSp SINE Alu 1 296 -17 975 274 117 45 chr12 14669788 14670431 -129612058 - L1ME3A LINE L1 -225 6014 5326 589 172 55 7 chr12 14670522 14670667 -129611822 + MER3 DNA MER1_type 53 204 -5 704 283 91 20 chr12 14670678 14671138 -129611351 - L1ME3A LINE L1 -886 5329 4837 493 332 75 12 chr12 14671189 14671442 -129611047 - L1ME3A LINE L1 -1381 4834 4566 921 291 67 37 chr12 14671535 14671581 -129610908 - L1ME3A LINE L1 -2531 3684 3641 2109 125 3 0 chr12 14671581 14671877 -129610612 + AluSq SINE Alu 2 298 -15 921 291 67 37 chr12 14671877 14672818 -129609671 - L1ME3A LINE L1 -2574 3641 2668 371 284 128 30 chr12 14673000 14673960 -129608529 - L1ME3A LINE L1 -3786 2429 1409 303 269 0 106 chr12 14674044 14674185 -129608304 - L1M4 LINE L1 -3617 2529 2404 340 239 65 45 chr12 14674294 14674449 -129608040 - L1ME3A LINE L1 -5067 1138 981 304 327 19 0 chr12 14674685 14674789 -129607700 - L1ME3A LINE L1 -5480 725 620 28 61 0 0 chr12 14675857 14675906 -129606583 + AT_rich Low_complexity Low_complexity 1 49 0 1083 203 21 57 chr12 14676202 14676260 -129606229 + L1ME3 LINE L1 5834 5893 -269 2004 146 3 7 chr12 14676260 14676562 -129605927 + AluSx SINE Alu 1 301 -11 1083 203 21 57 chr12 14676562 14676838 -129605651 + L1ME3 LINE L1 5893 6156 -6 509 312 24 18 chr12 14677462 14677632 -129604857 - MIR SINE MIR -83 179 9 671 287 116 7 chr12 14677634 14677944 -129604545 - L3 LINE CR1 -194 1383 1040 358 353 29 58 chr12 14679575 14679887 -129602602 + L2 LINE L2 2554 2856 -458 239 321 71 12 chr12 14680162 14680246 -129602243 + L2 LINE L2 3176 3264 -49 295 282 68 10 chr12 14681753 14681856 -129600633 + MIR SINE MIR 102 210 -52 237 276 13 0 chr12 14682534 14682610 -129599879 + MIR SINE MIR 68 144 -64 891 237 0 5 chr12 14682851 14683045 -129599444 + MIR SINE MIR 70 262 0 4523 169 30 5 chr12 14683388 14684245 -129598244 + L1MA4 LINE L1 5408 6286 -14 827 207 61 5 chr12 14684579 14684777 -129597712 + MER3 DNA MER1_type 1 209 0 769 145 8 0 chr12 14685618 14685735 -129596754 + FLAM_C SINE Alu 1 118 -15 237 132 0 0 chr12 14685749 14685787 -129596702 + (CA)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chr12 14685789 14685812 -129596677 + (TG)n Simple_repeat Simple_repeat 2 24 0 262 303 27 65 chr12 14685921 14686106 -129596383 - L2 LINE L2 -181 3091 2914 216 0 0 0 chr12 14686941 14686965 -129595524 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 362 301 46 75 chr12 14687115 14687288 -129595201 + MIR SINE MIR 20 187 -75 997 189 6 0 chr12 14687304 14687468 -129595021 + FRAM SINE Alu 1 158 -18 930 143 0 0 chr12 14689169 14689302 -129593187 + FLAM_A SINE Alu 1 133 0 321 127 152 51 chr12 14689888 14689967 -129592522 + LTR33A LTR ERVL 437 523 0 1955 145 0 26 chr12 14690168 14690478 -129592011 + AluSx SINE Alu 3 304 -8 225 211 78 125 chr12 14690781 14690909 -129591580 + L2 LINE L2 3188 3309 -4 443 285 31 57 chr12 14690994 14691187 -129591302 + MIR SINE MIR 74 261 -1 230 311 46 61 chr12 14691758 14691954 -129590535 + MLT1K LTR MaLR 2 194 -394 1313 243 87 23 chr12 14693281 14693763 -129588726 - LTR33 LTR ERVL -1 520 8 2382 81 3 0 chr12 14695723 14696031 -129586458 + AluY SINE Alu 1 309 -2 1221 168 5 28 chr12 14696421 14696635 -129585854 - MER58A DNA MER1_type -15 209 1 1984 132 0 42 chr12 14696723 14697034 -129585455 + AluJb SINE Alu 1 298 -14 2134 116 31 0 chr12 14697081 14697374 -129585115 + AluSx SINE Alu 1 302 -10 708 307 56 0 chr12 14697949 14698180 -129584309 - MIR SINE MIR 0 262 19 327 330 79 60 chr12 14698182 14698449 -129584040 + L3 LINE CR1 71 342 -1235 350 273 31 103 chr12 14698734 14698928 -129583561 + MIR SINE MIR 39 218 -44 2047 117 0 4 chr12 14698955 14699266 -129583223 + AluSc SINE Alu 1 310 0 438 325 30 18 chr12 14699308 14699474 -129583015 + L3 LINE CR1 373 540 -1037 710 294 126 68 chr12 14699708 14700137 -129582352 + L3 LINE CR1 642 1095 -482 26 30 0 0 chr12 14700176 14700209 -129582280 + AT_rich Low_complexity Low_complexity 1 33 0 2083 316 119 14 chr12 14700288 14701564 -129580925 + L2 LINE L2 1868 3299 -14 474 49 0 0 chr12 14702004 14702065 -129580424 + (TG)n Simple_repeat Simple_repeat 1 61 0 803 221 19 37 chr12 14702068 14702339 -129580150 + LTR33 LTR ERVL 256 521 0 209 320 41 57 chr12 14703057 14703179 -129579310 + L2 LINE L2 3184 3303 -10 406 283 12 57 chr12 14703419 14703636 -129578853 - MIR SINE MIR -56 206 3 865 300 12 4 chr12 14704547 14704790 -129577699 + MIR SINE MIR 18 262 0 626 298 54 30 chr12 14704796 14705128 -129577361 + L1MEc LINE L1 190 529 -6034 608 239 127 80 chr12 14705629 14706030 -129576459 + L1MEc LINE L1 851 1270 -5102 436 258 114 90 chr12 14706158 14706647 -129575842 + L1MEc LINE L1 1192 1840 -4692 436 293 46 36 chr12 14706655 14706935 -129575554 + L1MEc LINE L1 1889 2171 -4392 955 260 34 22 chr12 14706983 14707429 -129575060 + L1MEc LINE L1 2116 2566 -3997 1178 203 141 30 chr12 14707439 14707808 -129574681 + L1ME1 LINE L1 5606 6015 -149 234 128 0 0 chr12 14707808 14707847 -129574642 + MER3 DNA MER1_type 11 49 -160 253 214 55 0 chr12 14707868 14707949 -129574540 + L1ME1 LINE L1 6074 6161 -5 1734 159 19 12 chr12 14708275 14708595 -129573894 + MSTB LTR MaLR 1 322 -104 1344 153 36 14 chr12 14708595 14708818 -129573671 - AluJb SINE Alu -1 311 84 627 62 115 0 chr12 14708822 14708918 -129573571 + MSTB1 LTR MaLR 326 432 0 225 94 0 0 chr12 14709490 14709522 -129572967 + (CA)n Simple_repeat Simple_repeat 1 32 0 198 0 0 0 chr12 14710119 14710141 -129572348 + (CA)n Simple_repeat Simple_repeat 1 22 0 183 258 106 0 chr12 14711838 14711904 -129570585 - L2 LINE L2 -2 3311 3239 451 277 26 19 chr12 14712227 14712382 -129570107 - MIR SINE MIR -71 191 36 1352 281 48 9 chr12 14712462 14713048 -129569441 + L2 LINE L2 2709 3313 0 350 274 128 12 chr12 14713625 14713789 -129568700 - MIR SINE MIR -52 210 28 1931 188 59 48 chr12 14715196 14715786 -129566703 - Charlie2 DNA MER1_type -5 2857 2261 1148 244 109 6 chr12 14715905 14716225 -129566264 - Charlie2 DNA MER1_type -2499 363 11 666 297 57 8 chr12 14719371 14719617 -129562872 + MIR SINE MIR 5 262 0 848 119 91 40 chr12 14720123 14720299 -129562190 - MER53 DNA DNA -4 185 1 203 416 0 0 chr12 14720746 14720823 -129561666 + L2 LINE L2 3117 3193 -79 311 175 66 58 chr12 14721772 14721909 -129560580 + Charlie7 DNA MER1_type 2401 2538 -74 1825 231 126 15 chr12 14721923 14722489 -129560000 - MLT1G LTR MaLR -2 588 5 305 335 40 44 chr12 14722511 14722762 -129559727 + LTR33 LTR ERVL 30 279 -242 366 261 39 28 chr12 14722792 14722972 -129559517 + LTR33A LTR ERVL 328 509 -14 231 291 234 0 chr12 14723074 14723215 -129559274 + MIR3 SINE MIR 30 203 -5 1997 118 11 7 chr12 14723601 14723881 -129558608 + AluSx SINE Alu 23 303 -9 21 0 0 0 chr12 14724186 14724207 -129558282 + AT_rich Low_complexity Low_complexity 1 21 0 261 164 0 119 chr12 14727016 14727083 -129555406 + MER3 DNA MER1_type 146 204 -5 * 557 183 0 0 chr12 14727042 14727135 -129555354 - MER3 DNA MER1_type -116 93 1 366 195 0 0 chr12 14727742 14727829 -129554660 + CT-rich Low_complexity Low_complexity 1 87 0 258 105 0 0 chr12 14728799 14728837 -129553652 + (T)n Simple_repeat Simple_repeat 1 38 0 718 253 103 0 chr12 14729064 14729258 -129553231 - MER20 DNA MER1_type -2 217 4 571 294 65 20 chr12 14729269 14729517 -129552972 - MIR SINE MIR -2 260 2 282 250 0 15 chr12 14730968 14731036 -129551453 + MER5B DNA MER1_type 2 68 -110 309 51 0 0 chr12 14731134 14731173 -129551316 + (CA)n Simple_repeat Simple_repeat 1 39 0 262 271 203 28 chr12 14732599 14732776 -129549713 - MIR SINE MIR -45 217 10 215 307 165 24 chr12 14734337 14734464 -129548025 - L3 LINE CR1 -1340 237 93 221 0 35 0 chr12 14734603 14734632 -129547857 + (CA)n Simple_repeat Simple_repeat 2 31 0 267 276 0 136 chr12 14735077 14735276 -129547213 + MIR SINE MIR 20 191 -71 458 306 111 14 chr12 14735784 14736000 -129546489 - MIR SINE MIR -4 258 22 553 253 99 5 chr12 14736412 14736614 -129545875 + MIR SINE MIR 5 225 -37 205 331 149 37 chr12 14736639 14736935 -129545554 - L2 LINE L2 -18 3254 2926 260 244 47 23 chr12 14737468 14737554 -129544935 - MIR SINE MIR -117 145 58 219 283 224 33 chr12 14738403 14738555 -129543934 + MIR SINE MIR 20 200 -62 1736 108 0 0 chr12 14738943 14739166 -129543323 - AluSg SINE Alu -51 259 37 184 384 0 20 chr12 14739185 14739284 -129543205 - L2 LINE L2 -213 3059 2963 233 295 63 32 chr12 14739555 14739650 -129542839 - L2 LINE L2 -11 3261 3164 22 0 0 0 chr12 14739651 14739673 -129542816 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr12 14739738 14739777 -129542712 + (CA)n Simple_repeat Simple_repeat 2 40 0 387 304 8 8 chr12 14741129 14741254 -129541235 - MER5B DNA MER1_type 0 178 54 180 163 0 0 chr12 14741264 14741307 -129541182 + T-rich Low_complexity Low_complexity 4 46 0 231 352 32 0 chr12 14743586 14743711 -129538778 + L2 LINE L2 2933 3061 -211 207 288 0 40 chr12 14743887 14744012 -129538477 + A-rich Low_complexity Low_complexity 4 123 0 398 265 204 0 chr12 14744270 14744417 -129538072 + MER5A DNA MER1_type 13 189 0 384 314 42 0 chr12 14744499 14744617 -129537872 + MIR3 SINE MIR 81 203 -5 389 344 39 30 chr12 14744704 14744934 -129537555 - L2 LINE L2 -1 3271 3040 245 169 17 0 chr12 14749658 14749717 -129532772 + GA-rich Low_complexity Low_complexity 2 61 0 242 273 11 11 chr12 14749945 14750033 -129532456 + (CACG)n Simple_repeat Simple_repeat 2 89 0 192 40 0 0 chr12 14750935 14750960 -129531529 + (CA)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chr12 14752557 14752583 -129529906 + AT_rich Low_complexity Low_complexity 1 26 0 235 169 0 96 chr12 14753065 14753148 -129529341 + MER116 DNA Mariner 6 80 0 260 347 48 8 chr12 14753171 14753295 -129529194 + L2 LINE L2 3138 3266 -6 2220 109 10 3 chr12 14753530 14753834 -129528655 + AluSp SINE Alu 1 306 -7 2312 201 114 24 chr12 14754189 14754926 -129527563 - MER69 DNA AcHobo -21 2505 1703 878 119 0 0 chr12 14754938 14755072 -129527417 - LTR1 LTR ERV1 -642 143 10 964 270 30 4 chr12 14755321 14755554 -129526935 - MER69 DNA AcHobo -842 384 146 1469 153 0 0 chr12 14755563 14755779 -129526710 + AluSx SINE Alu 53 268 -44 22 0 0 0 chr12 14755783 14755805 -129526684 + AT_rich Low_complexity Low_complexity 1 22 0 597 243 88 0 chr12 14755805 14755953 -129526536 - MER69 DNA AcHobo -2364 162 2 2416 89 7 0 chr12 14756448 14756751 -129525738 - AluSg SINE Alu -5 305 1 258 156 0 0 chr12 14757932 14757977 -129524512 + (CA)n Simple_repeat Simple_repeat 1 45 0 361 247 0 0 chr12 14758093 14758166 -129524323 + L2 LINE L2 3197 3269 -44 30 77 0 0 chr12 14758382 14758447 -129524042 + AT_rich Low_complexity Low_complexity 1 65 0 564 258 67 86 chr12 14758447 14758819 -129523670 - HAL1 LINE L1 0 2507 2143 1132 262 51 16 chr12 14758840 14759214 -129523275 - L1MC4 LINE L1 -387 7655 7269 795 225 46 41 chr12 14759492 14759923 -129522566 + MLT1H LTR MaLR 23 409 0 470 297 42 6 chr12 14760283 14760448 -129522041 - MIR SINE MIR -44 218 48 806 241 103 5 chr12 14760855 14761079 -129521410 - MIR SINE MIR 0 262 17 239 265 96 0 chr12 14761142 14761225 -129521264 - MLT1I LTR MaLR 0 409 319 494 281 75 6 chr12 14761377 14761537 -129520952 - MLT1I LTR MaLR -230 179 9 2066 122 0 53 chr12 14762028 14762347 -129520142 + AluSx SINE Alu 1 302 -10 1256 169 13 42 chr12 14762380 14762513 -129519976 + AluJb SINE Alu 1 125 -187 2260 107 0 23 chr12 14762513 14762823 -129519666 + AluSx SINE Alu 1 303 -9 1256 169 13 42 chr12 14762823 14762926 -129519563 + AluJb SINE Alu 125 230 -82 511 143 45 26 chr12 14762950 14763104 -129519385 + GA-rich Low_complexity Low_complexity 3 159 0 2333 48 7 14 chr12 14764027 14764320 -129518169 - AluY SINE Alu -9 302 12 301 295 125 52 chr12 14764471 14764759 -129517730 - L1ME LINE L1 -265 5856 5548 255 314 0 0 chr12 14765738 14765808 -129516681 + L2 LINE L2 2169 2238 -1076 245 350 70 0 chr12 14765857 14766000 -129516489 + L2 LINE L2 2617 2769 -545 2107 113 27 87 chr12 14766242 14766612 -129515877 + MER7A DNA MER2_type 1 346 0 1993 135 40 30 chr12 14767308 14767679 -129514810 + THE1C LTR MaLR 1 375 0 2422 74 0 3 chr12 14768778 14769090 -129513399 - AluY SINE Alu 0 311 1 2546 101 8 3 chr12 14771061 14771427 -129511062 - L1PB1 LINE L1 -3 6148 5781 256 128 5 97 chr12 14771427 14771623 -129510866 + (TA)n Simple_repeat Simple_repeat 2 179 0 240 226 88 29 chr12 14771642 14771744 -129510745 + L1MC4 LINE L1 6614 6721 -1321 * 11323 155 73 23 chr12 14771717 14776691 -129505798 - L1P5 LINE L1 -363 6504 1101 396 303 69 11 chr12 14777280 14777455 -129505034 + L3b LINE CR1 1161 1345 -238 239 261 15 0 chr12 14777475 14777540 -129504949 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 22 0 0 0 chr12 14777815 14777837 -129504652 + AT_rich Low_complexity Low_complexity 1 22 0 264 306 43 104 chr12 14778209 14778624 -129503865 - L2 LINE L2 -337 2977 2588 1006 193 0 38 chr12 14778773 14779011 -129503478 + L1MB8 LINE L1 5934 6162 -16 674 203 54 20 chr12 14779025 14779173 -129503316 + MLT2C1 LTR ERVL 189 341 -56 195 181 0 48 chr12 14779173 14779278 -129503211 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 2458 224 22 27 chr12 14779318 14780081 -129502408 + MLT1C-int LTR MaLR 1 875 -496 1659 243 90 0 chr12 14780292 14780670 -129501819 + MLT1C-int LTR MaLR 960 1371 0 1360 219 98 36 chr12 14780670 14780999 -129501490 + MLT1C LTR MaLR 1 365 -102 13937 129 48 18 chr12 14780999 14782379 -129500110 - Tigger1 DNA MER2_type 0 2418 939 2117 129 0 19 chr12 14782379 14782689 -129499800 - AluSx SINE Alu -8 304 1 13937 129 48 18 chr12 14782689 14783657 -129498832 - Tigger1 DNA MER2_type -1479 939 1 1360 219 98 36 chr12 14783657 14783766 -129498723 + MLT1C LTR MaLR 365 466 -1 32 57 0 0 chr12 14784320 14784373 -129498116 + AT_rich Low_complexity Low_complexity 1 53 0 770 289 127 52 chr12 14784943 14785406 -129497083 - MLT1J LTR MaLR -8 503 6 21 0 0 0 chr12 14785586 14785607 -129496882 + AT_rich Low_complexity Low_complexity 1 21 0 255 235 111 12 chr12 14786677 14786758 -129495731 - L2 LINE L2 0 3313 3225 180 0 0 0 chr12 14786864 14786884 -129495605 + (A)n Simple_repeat Simple_repeat 1 20 0 5893 282 86 20 chr12 14786990 14790697 -129491792 - L1ME1 LINE L1 -9 6655 2700 1343 272 65 59 chr12 14790709 14791020 -129491469 - L1ME1 LINE L1 -4153 2491 2184 2623 49 0 0 chr12 14791020 14791328 -129491161 - AluY SINE Alu -3 308 1 1343 272 65 59 chr12 14791328 14791485 -129491004 - L1ME1 LINE L1 -4460 2184 2030 1477 170 27 82 chr12 14791485 14791815 -129490674 - AluJo SINE Alu 0 312 1 1343 272 65 59 chr12 14791815 14792410 -129490079 - L1ME1 LINE L1 -4614 2030 1311 1272 235 15 0 chr12 14792459 14792800 -129489689 - L1ME1 LINE L1 -5190 1356 1011 24 0 0 0 chr12 14792805 14792829 -129489660 + AT_rich Low_complexity Low_complexity 1 24 0 295 307 52 26 chr12 14792963 14793116 -129489373 - L1ME1 LINE L1 -5667 875 719 225 0 0 0 chr12 14793484 14793509 -129488980 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 14794032 14794054 -129488435 + AT_rich Low_complexity Low_complexity 1 22 0 2077 113 3 13 chr12 14794060 14794193 -129488296 + AluSx SINE Alu 3 136 -176 2501 68 0 0 chr12 14794193 14794503 -129487986 + AluY SINE Alu 1 310 -1 2077 113 3 13 chr12 14794503 14794660 -129487829 + AluSx SINE Alu 136 292 -20 2359 82 3 19 chr12 14794660 14794978 -129487511 + AluSq SINE Alu 1 313 0 23 0 0 0 chr12 14796176 14796199 -129486290 + AT_rich Low_complexity Low_complexity 1 23 0 2071 123 3 3 chr12 14796761 14797061 -129485428 + AluJb SINE Alu 5 304 -8 1175 176 49 59 chr12 14797191 14797515 -129484974 - MER33 DNA MER1_type -3 321 1 225 320 90 0 chr12 14798792 14798914 -129483575 - L3b LINE CR1 -338 1245 1113 251 244 167 0 chr12 14799773 14799863 -129482626 + MER103 DNA DNA 14 118 -48 2065 116 3 3 chr12 14800406 14800712 -129481777 + AluSq SINE Alu 1 306 0 2441 190 39 16 chr12 14800742 14801236 -129481253 + MLT1D LTR MaLR 1 505 0 2452 84 0 3 chr12 14801360 14801669 -129480820 - AluSp SINE Alu -2 311 4 2656 196 20 46 chr12 14802781 14803342 -129479147 + MLT2B3 LTR ERVL 1 546 -8 792 225 19 9 chr12 14803643 14803856 -129478633 + L1MB2 LINE L1 5117 5331 -815 1108 121 21 32 chr12 14803859 14804049 -129478440 + L1PA16 LINE L1 5970 6157 -9 2324 103 0 0 chr12 14804074 14804376 -129478113 + AluSx SINE Alu 1 302 -10 483 181 72 36 chr12 14804386 14804524 -129477965 + L1MB2 LINE L1 5287 5429 -751 31949 105 11 56 chr12 14804536 14810971 -129471518 + L1PA7 LINE L1 12 6141 -13 3968 145 20 29 chr12 14810984 14811743 -129470746 + L1MB2 LINE L1 5417 6168 -3 275 351 50 18 chr12 14813120 14813293 -129469196 + MIR SINE MIR 32 208 -54 2010 142 7 0 chr12 14813302 14813598 -129468891 - AluSx SINE Alu -14 298 1 845 168 69 0 chr12 14814067 14814240 -129468249 + MER3 DNA MER1_type 4 188 -21 240 35 0 0 chr12 14815951 14815980 -129466509 + (CA)n Simple_repeat Simple_repeat 1 29 0 233 343 96 61 chr12 14817821 14818325 -129464164 - L2 LINE L2 0 3272 2754 616 333 116 35 chr12 14818849 14819198 -129463291 - L2 LINE L2 -609 2705 2386 1802 158 24 30 chr12 14819198 14819496 -129462993 + AluJb SINE Alu 3 298 -14 616 333 116 35 chr12 14819496 14819774 -129462715 - L2 LINE L2 -928 2386 2027 393 156 126 52 chr12 14820265 14820400 -129462089 - MER112 DNA MER1_type -49 211 67 1768 143 91 96 chr12 14820451 14820879 -129461610 + MSTB LTR MaLR 1 426 0 731 271 52 61 chr12 14820969 14821202 -129461287 - LTR16C LTR ERVL -4 487 256 1072 219 37 0 chr12 14821202 14821417 -129461072 - MER58A DNA MER1_type -1 223 1 731 271 52 61 chr12 14821417 14821493 -129460996 - LTR16C LTR ERVL -235 256 181 27 0 0 0 chr12 14821607 14821634 -129460855 + AT_rich Low_complexity Low_complexity 1 27 0 213 356 74 22 chr12 14822151 14822286 -129460203 - MIR3 SINE MIR -46 162 21 792 235 169 86 chr12 14822476 14822978 -129459511 + MLT1H LTR MaLR 6 549 0 341 248 64 40 chr12 14825412 14825537 -129456952 - L2 LINE L2 -5 3308 3181 252 387 43 35 chr12 14825592 14825822 -129456667 + L2 LINE L2 2553 2784 -530 666 245 68 59 chr12 14825836 14826100 -129456389 - MIR SINE MIR -4 258 5 1686 139 70 22 chr12 14826366 14826639 -129455850 - AluSx SINE Alu -26 286 1 186 298 0 0 chr12 14827690 14827737 -129454752 - MIR SINE MIR -109 99 53 2209 114 18 47 chr12 14828319 14828705 -129453784 - THE1C LTR MaLR 0 375 1 391 278 309 11 chr12 14829537 14829728 -129452761 - MIR SINE MIR -8 254 7 4144 122 12 12 chr12 14829751 14830401 -129452088 + MER39B LTR ERV1 4 653 0 616 291 133 22 chr12 14831323 14831728 -129450761 - MLT1K LTR MaLR -17 571 122 637 249 17 28 chr12 14832288 14832465 -129450024 + LTR33 LTR ERVL 9 183 -338 497 209 22 22 chr12 14832575 14832714 -129449775 + LTR33 LTR ERVL 383 521 0 2511 46 0 3 chr12 14833712 14834019 -129448470 + AluY SINE Alu 1 306 -5 454 175 72 10 chr12 14835137 14835234 -129447255 + MLT1K LTR MaLR 480 582 -6 182 241 0 56 chr12 14835324 14835378 -129447111 + MER5A DNA MER1_type 19 69 -120 306 276 48 38 chr12 14835786 14835996 -129446493 + L1ME1 LINE L1 5613 5824 -297 434 192 231 19 chr12 14836060 14836216 -129446273 + MER53 DNA DNA 1 189 0 3746 156 50 1 chr12 14836306 14836972 -129445517 + MER50 LTR ERV1 13 710 -24 314 239 11 0 chr12 14837205 14837297 -129445192 + CT-rich Low_complexity Low_complexity 4 96 0 1470 213 195 24 chr12 14837823 14838284 -129444205 + MLT1F LTR MaLR 1 540 -2 358 239 73 40 chr12 14838284 14838457 -129444032 + L1ME LINE L1 534 695 -5375 487 254 83 16 chr12 14838483 14838676 -129443813 - L1M4 LINE L1 -1715 4431 4226 358 219 193 82 chr12 14838680 14838950 -129443539 + L1ME1 LINE L1 5863 6162 -4 22 0 0 0 chr12 14839188 14839210 -129443279 + AT_rich Low_complexity Low_complexity 1 22 0 227 211 77 19 chr12 14839256 14839308 -129443181 - MIR SINE MIR -75 133 79 240 397 19 6 chr12 14839398 14839554 -129442935 - L2 LINE L2 -211 3061 2904 1373 290 105 18 chr12 14840154 14840725 -129441764 + MLT1G LTR MaLR 1 577 -13 315 204 0 0 chr12 14841265 14841319 -129441170 - L2 LINE L2 -1 3312 3259 283 291 31 0 chr12 14841830 14841957 -129440532 - L1ME LINE L1 -710 5452 5322 189 284 68 27 chr12 14842263 14842337 -129440152 - L3 LINE CR1 -582 995 919 285 173 27 0 chr12 14843423 14843498 -129438991 + L1MEc LINE L1 1265 1341 -5055 1933 149 0 0 chr12 14843507 14843789 -129438700 + AluSx SINE Alu 5 286 -26 282 116 0 0 chr12 14843789 14843832 -129438657 + (TA)n Simple_repeat Simple_repeat 2 44 0 216 0 0 0 chr12 14843831 14843855 -129438634 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 858 283 75 21 chr12 14843856 14844585 -129437904 + L1MEc LINE L1 2556 3324 -2891 * 2385 218 24 30 chr12 14844578 14845276 -129437213 + L1M4 LINE L1 4285 4978 -1168 584 213 0 0 chr12 14845276 14845384 -129437105 + Tigger3(Golem) DNA MER2_type 1 108 -2921 4482 112 30 3 chr12 14845385 14846109 -129436380 + Tigger3(Golem) DNA MER2_type 2285 3028 -1 3607 258 71 18 chr12 14846109 14847243 -129435246 - L1M3de LINE L1 -4575 2078 458 976 206 49 111 chr12 14847304 14847692 -129434797 - MLT2B1 LTR ERVL -50 364 1 1162 284 75 16 chr12 14847701 14848399 -129434090 - L1M4 LINE L1 -1816 4330 3592 2277 81 3 17 chr12 14848460 14848758 -129433731 - AluY SINE Alu -17 294 1 326 218 30 0 chr12 14848788 14848889 -129433600 + (TA)n Simple_repeat Simple_repeat 1 104 0 46 33 0 0 chr12 14848913 14848973 -129433516 + AT_rich Low_complexity Low_complexity 1 60 0 731 61 0 0 chr12 14849019 14849117 -129433372 + L1PA6 LINE L1 1 98 -6048 * 34735 60 6 2 chr12 14849115 14854617 -129427872 + L1PA6 LINE L1 623 6147 -7 3651 190 60 12 chr12 14854780 14855935 -129426554 - L1MB7 LINE L1 0 6184 4977 6222 136 59 20 chr12 14855935 14856466 -129426023 - Tigger3b DNA MER2_type -1797 1231 722 2251 98 3 7 chr12 14856466 14856762 -129425727 - AluSq SINE Alu -18 295 1 6222 136 59 20 chr12 14856762 14857403 -129425086 - Tigger3b DNA MER2_type -2306 722 14 1356 264 45 38 chr12 14857407 14858874 -129423615 + L1M4c LINE L1 1582 3150 -3494 437 192 75 41 chr12 14858885 14859031 -129423458 + L1M4c LINE L1 1580 1708 -4834 8331 45 1 0 chr12 14859069 14860868 -129421621 - L1PA5 LINE L1 -3 6151 4352 2770 211 55 40 chr12 14860868 14861763 -129420726 + L1M4c LINE L1 3139 4046 -2598 725 220 62 100 chr12 14861883 14862192 -129420297 + MLT1A1 LTR MaLR 6 302 -63 234 183 267 0 chr12 14862193 14862253 -129420236 - L1M4c LINE L1 -5833 551 476 1830 157 7 7 chr12 14862353 14862677 -129419812 - AluSx SINE Alu 0 324 1 2160 101 44 6 chr12 14862711 14863028 -129419461 - L1PA11 LINE L1 0 6174 5846 587 135 0 0 chr12 14863029 14863118 -129419371 + L1MA2 LINE L1 6196 6284 -20 811 138 8 31 chr12 14865219 14865349 -129417140 + AluSg/x SINE Alu 172 298 -14 290 228 9 138 chr12 14865354 14865578 -129416911 + L1M4c LINE L1 4391 4585 -2059 327 283 90 21 chr12 14865702 14865847 -129416642 + L1M4c LINE L1 4668 4822 -1822 34323 78 21 14 chr12 14966203 14969693 -129312796 - HERVL-A1 LTR ERVL -1112 4542 1079 1985 141 0 33 chr12 14969693 14969999 -129312490 + AluSx SINE Alu 1 296 -16 34323 78 21 14 chr12 14969999 14970665 -129311824 - HERVL-A1 LTR ERVL -4575 1079 348 2109 76 4 8 chr12 14970665 14970929 -129311560 - AluY SINE Alu -20 291 29 34323 78 21 14 chr12 14970929 14971280 -129311209 - HERVL-A1 LTR ERVL -5306 348 1 2860 111 23 20 chr12 14971280 14971723 -129310766 - MLT2A1 LTR ERVL 0 444 1 10928 169 8 28 chr12 14971746 14973542 -129308947 + L1P4 LINE L1 3275 5015 -1146 2221 75 0 7 chr12 14973542 14973820 -129308669 + AluY SINE Alu 36 311 0 10928 169 8 28 chr12 14973820 14974268 -129308221 + L1P4 LINE L1 5015 5470 -691 418 192 0 0 chr12 14974268 14974341 -129308148 + AluSp SINE Alu 116 188 -115 2117 112 7 0 chr12 14974341 14974627 -129307862 + AluSq SINE Alu 18 305 -8 2470 79 3 0 chr12 14974648 14974952 -129307537 + AluSc SINE Alu 1 305 -4 1317 210 104 22 chr12 14975053 14975419 -129307070 - MSTD LTR MaLR 0 396 1 189 0 0 0 chr12 14975504 14975525 -129306964 + (T)n Simple_repeat Simple_repeat 1 21 0 1124 239 17 3 chr12 14975555 14975844 -129306645 + L1MA4 LINE L1 6005 6297 -3 230 183 17 17 chr12 14975840 14975900 -129306589 + L1M4c LINE L1 5142 5201 -1443 * 2351 50 4 0 chr12 14975904 14976184 -129306305 + AluY SINE Alu 1 281 -30 951 230 261 46 chr12 14976199 14976492 -129305997 + LTR50 LTR ERVL 150 378 -417 2033 136 0 7 chr12 14976492 14976786 -129305703 + AluSx SINE Alu 1 292 -20 951 230 261 46 chr12 14976786 14976802 -129305687 + LTR50 LTR ERVL 378 389 -406 2384 59 3 3 chr12 14976802 14977092 -129305397 - AluY SINE Alu -19 292 3 951 230 261 46 chr12 14977092 14977263 -129305226 + LTR50 LTR ERVL 389 735 -60 565 237 0 66 chr12 14977310 14977402 -129305087 - Tigger6a DNA MER2_type -516 1081 1001 859 87 24 0 chr12 14977402 14977529 -129304960 + L1MB2 LINE L1 6042 6171 0 565 237 0 66 chr12 14977529 14977588 -129304901 - Tigger6a DNA MER2_type -596 1001 940 881 145 0 22 chr12 14977588 14977726 -129304763 + FLAM_C SINE Alu 1 135 -8 3832 154 31 114 chr12 14977727 14978196 -129304293 - Tigger6a DNA MER2_type -647 950 443 2722 42 0 0 chr12 14978196 14978507 -129303982 - AluY SINE Alu 0 311 1 3832 154 31 114 chr12 14978507 14979004 -129303485 - Tigger6a DNA MER2_type -1154 443 -94 1876 133 25 0 chr12 14979004 14979283 -129303206 - AluSg SINE Alu -24 286 1 3832 154 31 114 chr12 14979283 14979315 -129303174 - Tigger6a DNA MER2_type -1691 4294967202 56 1547 198 144 5 chr12 14979315 14979725 -129302764 + MLT1C LTR MaLR 1 467 0 3832 154 31 114 chr12 14979725 14979777 -129302712 - Tigger6a DNA MER2_type -1540 57 2 31 0 0 0 chr12 14979785 14979816 -129302673 + AT_rich Low_complexity Low_complexity 1 31 0 2177 108 20 7 chr12 14979820 14980116 -129302373 - AluSg SINE Alu -10 300 1 22 0 0 0 chr12 14980564 14980586 -129301903 + AT_rich Low_complexity Low_complexity 1 22 0 2118 108 0 57 chr12 14980650 14980964 -129301525 - AluSg SINE Alu -12 298 3 2249 123 0 3 chr12 14980965 14981267 -129301222 - AluSx SINE Alu -11 301 1 2432 222 31 56 chr12 14981448 14981560 -129300929 + L1 LINE L1 2804 2917 -3229 1973 110 59 0 chr12 14981560 14981850 -129300639 + AluY SINE Alu 5 311 0 2432 222 31 56 chr12 14981850 14982712 -129299777 + L1 LINE L1 2917 3695 -2451 238 151 70 12 chr12 14982740 14982826 -129299663 + L1 LINE L1 3663 3753 -2393 1647 106 5 0 chr12 14982844 14983062 -129299427 + AluSq SINE Alu 3 221 -92 689 129 0 0 chr12 14983065 14983166 -129299323 - AluS SINE Alu -210 102 2 2220 84 20 13 chr12 14983177 14983475 -129299014 - AluSx SINE Alu -12 300 1 2348 85 13 0 chr12 14983557 14983864 -129298625 - AluY SINE Alu 0 311 1 2148 117 0 0 chr12 14984628 14984943 -129297546 - AluSg SINE Alu 0 315 1 650 347 48 3 chr12 14985344 14985696 -129296793 + ERVL LTR ERVL 4704 5071 -693 349 214 51 26 chr12 14985880 14985997 -129296492 + ERVL LTR ERVL 5261 5380 -384 746 225 41 103 chr12 14986056 14986118 -129296371 + MLT1J LTR MaLR 9 73 -438 1932 133 14 7 chr12 14986118 14986411 -129296078 - AluJb SINE Alu -17 295 1 746 225 41 103 chr12 14986411 14986619 -129295870 + MLT1J LTR MaLR 73 262 -249 920 124 16 0 chr12 14986767 14986896 -129295593 + AluSq/x SINE Alu 1 131 -181 1118 201 11 49 chr12 14986899 14987162 -129295327 + MLT1E3 LTR MaLR 372 624 0 1976 155 0 0 chr12 14987572 14987876 -129294613 - AluSx SINE Alu -8 304 1 2065 124 0 17 chr12 14987881 14988198 -129294291 - AluSx SINE Alu 0 312 1 789 224 54 85 chr12 14988349 14988608 -129293881 + MLT1J LTR MaLR 261 511 0 1782 164 28 3 chr12 14988883 14989169 -129293320 + AluJb SINE Alu 1 293 -19 897 230 123 109 chr12 14989271 14989750 -129292739 - MLT1D LTR MaLR 0 505 20 189 0 0 0 chr12 14989828 14989849 -129292640 + (TA)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr12 14989864 14989899 -129292590 + AT_rich Low_complexity Low_complexity 1 35 0 324 70 0 0 chr12 14989921 14989964 -129292525 + (TG)n Simple_repeat Simple_repeat 2 44 0 1055 127 0 7 chr12 14989965 14990115 -129292374 - AluSg/x SINE Alu -17 295 147 279 286 126 39 chr12 14990648 14990768 -129291721 + MIR SINE MIR 53 196 -66 2418 86 0 3 chr12 14990768 14991071 -129291418 + AluSg SINE Alu 1 302 -8 279 286 126 39 chr12 14991071 14991132 -129291357 + MIR SINE MIR 196 250 -12 239 204 0 0 chr12 14991251 14991295 -129291194 - MLT1A1 LTR MaLR 0 365 322 799 157 0 0 chr12 14991296 14991417 -129291072 + AluJo SINE Alu 1 121 -181 6095 135 150 99 chr12 14991417 14993027 -129289462 + pTR5 LTR ERV1 748 2438 0 988 175 68 0 chr12 14993028 14993205 -129289284 + AluJo SINE Alu 111 299 -13 1083 224 78 59 chr12 14993317 14993675 -129288814 - MLT1A1 LTR MaLR 0 365 1 347 89 0 0 chr12 14994740 14994785 -129287704 + Alu SINE Alu 1 45 -256 1294 92 0 6 chr12 14994785 14994958 -129287531 + AluSg/x SINE Alu 137 308 -4 2233 107 10 0 chr12 14995254 14995554 -129286935 + AluSx SINE Alu 1 303 -9 263 371 43 0 chr12 14995607 14995723 -129286766 + L2 LINE L2 3150 3270 -2 1445 143 103 8 chr12 14995801 14996053 -129286436 - AluJo SINE Alu -14 298 23 2308 148 8 23 chr12 14996079 14996484 -129286005 - L1MA5 LINE L1 -172 6012 5674 2162 89 0 18 chr12 14996484 14996766 -129285723 - AluSq SINE Alu -36 277 1 2308 148 8 23 chr12 14996766 14996781 -129285708 - L1MA5 LINE L1 -510 5674 5660 471 18 0 0 chr12 14996825 14996881 -129285608 + (TATG)n Simple_repeat Simple_repeat 2 57 0 2136 122 0 0 chr12 14996881 14997167 -129285322 - AluSx SINE Alu -26 286 1 1469 204 27 7 chr12 14997204 14997498 -129284991 + AluJo SINE Alu 6 305 -7 336 218 182 24 chr12 14997501 14997666 -129284823 - L1MC5 LINE L1 -510 7451 7261 2407 63 7 3 chr12 14997667 14997968 -129284521 - AluY SINE Alu -7 304 3 2331 91 3 0 chr12 14997971 14998267 -129284222 - AluSg SINE Alu -13 297 1 2527 57 0 16 chr12 14998730 14999046 -129283443 + AluY SINE Alu 1 311 0 545 343 164 18 chr12 14999056 14999441 -129283048 - MLT1K LTR MaLR -91 497 57 1165 315 83 12 chr12 14999441 14999983 -129282506 + MLT2E LTR ERVL 1 627 -1 1576 155 37 37 chr12 15000071 15000395 -129282094 + AluJo SINE Alu 1 312 0 2239 155 72 42 chr12 15000395 15000660 -129281829 + L1MA8 LINE L1 5777 6033 -258 2433 70 7 13 chr12 15000660 15000960 -129281529 + AluY SINE Alu 2 299 -12 2239 155 72 42 chr12 15000960 15001010 -129281479 + L1MA8 LINE L1 6033 6080 -211 2064 135 0 7 chr12 15001010 15001314 -129281175 + AluSx SINE Alu 1 302 -10 2239 155 72 42 chr12 15001314 15001494 -129280995 + L1MA8 LINE L1 6080 6288 -3 2427 45 41 7 chr12 15001510 15001800 -129280689 + AluY SINE Alu 1 300 -11 2445 83 0 0 chr12 15001855 15002156 -129280333 + AluY SINE Alu 6 306 -5 713 354 50 20 chr12 15002176 15002572 -129279917 + ERVL-E LTR ERVL 287 694 -5070 2941 88 23 5 chr12 15002676 15003073 -129279416 + MLT2A1 LTR ERVL 1 404 -40 272 97 21 69 chr12 15003073 15003217 -129279272 + (TA)n Simple_repeat Simple_repeat 2 138 0 396 42 0 0 chr12 15003227 15003275 -129279214 + MLT2A1 LTR ERVL 406 453 0 43920 75 8 10 chr12 15003275 15004272 -129278217 + HERVL-A1-A1 LTR ERVL 1 998 -4656 2246 110 7 7 chr12 15004272 15004572 -129277917 - AluSx SINE Alu -12 300 1 43920 75 8 10 chr12 15004572 15006865 -129275624 + HERVL-A1-A1 LTR ERVL 998 3294 -2360 2246 116 0 7 chr12 15006865 15007175 -129275314 - AluSg SINE Alu -2 308 1 43920 75 8 10 chr12 15007175 15009547 -129272942 + HERVL-A1-A1 LTR ERVL 3294 5654 0 2511 101 35 11 chr12 15009547 15009913 -129272576 + MLT2A1 LTR ERVL 1 375 -69 180 0 0 0 chr12 15009913 15009933 -129272556 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr12 15010115 15010136 -129272353 + AT_rich Low_complexity Low_complexity 1 21 0 344 56 33 22 chr12 15010136 15010196 -129272293 + MLT2A1 LTR ERVL 391 442 -2 1999 269 80 2 chr12 15010198 15010712 -129271777 + ERVL LTR ERVL 2940 3493 -2271 3230 269 71 25 chr12 15010762 15011801 -129270688 + ERVL LTR ERVL 3576 4662 -1102 2054 232 167 16 chr12 15011811 15012571 -129269918 - L1MCa LINE L1 -4489 1937 1063 2081 127 10 16 chr12 15012574 15012882 -129269607 - AluSx SINE Alu -6 306 1 2442 82 3 16 chr12 15012893 15013208 -129269281 - AluY SINE Alu 0 311 1 1884 128 0 66 chr12 15013278 15013413 -129269076 + AluSx SINE Alu 1 143 -181 2300 107 3 3 chr12 15013413 15013723 -129268766 + AluSg SINE Alu 1 310 0 1884 128 0 66 chr12 15013723 15013931 -129268558 + AluSx SINE Alu 143 324 0 1089 125 36 24 chr12 15013934 15014102 -129268387 + AluSg/x SINE Alu 127 296 -16 224 138 64 32 chr12 15014103 15014197 -129268292 + (TA)n Simple_repeat Simple_repeat 1 97 0 6537 78 30 34 chr12 15014939 15016178 -129266311 - L1PA12 LINE L1 0 6168 4931 471 277 78 102 chr12 15016182 15016724 -129265765 - HAL1 LINE L1 -167 2340 1819 2517 68 0 0 chr12 15016724 15017033 -129265456 - AluY SINE Alu -2 309 1 471 277 78 102 chr12 15017033 15017237 -129265252 - HAL1 LINE L1 -688 1819 1612 786 208 7 7 chr12 15017245 15017394 -129265095 - FRAM SINE Alu -26 150 2 566 249 82 85 chr12 15017398 15017715 -129264774 - HAL1 LINE L1 -880 1627 1312 1624 214 84 65 chr12 15017722 15018259 -129264230 + MLT2B3 LTR ERVL 1 547 -7 2264 91 3 0 chr12 15018339 15018650 -129263839 + AluSp SINE Alu 1 312 0 2353 89 0 0 chr12 15018652 15018944 -129263545 + AluSc SINE Alu 1 292 -17 2895 159 18 34 chr12 15019046 15019091 -129263398 - L1MB4 LINE L1 0 6180 6136 2234 126 0 3 chr12 15019091 15019401 -129263088 - AluSx SINE Alu -3 309 1 2895 159 18 34 chr12 15019401 15019977 -129262512 - L1MB4 LINE L1 -44 6136 5569 472 193 8 34 chr12 15019979 15020098 -129262391 - L1MB4 LINE L1 -660 5518 5403 418 225 40 46 chr12 15020103 15020254 -129262235 - L1MB4 LINE L1 -1616 4530 4381 2234 104 3 22 chr12 15020429 15020746 -129261743 + AluSx SINE Alu 1 311 -1 1258 217 92 32 chr12 15020799 15021356 -129261133 - Zaphod DNA AcHobo -189 3842 3253 1738 199 20 35 chr12 15021488 15021886 -129260603 + MSTD LTR MaLR 1 392 -4 5296 247 50 48 chr12 15021892 15022218 -129260271 + MSTD-int LTR MaLR 2 326 -1409 2482 108 27 14 chr12 15022218 15022588 -129259901 - THE1C LTR MaLR 0 375 1 9950 116 38 17 chr12 15022588 15023309 -129259180 - THE1C-int LTR MaLR 0 1580 875 1665 144 8 0 chr12 15023309 15023559 -129258930 - AluSq SINE Alu -19 294 43 9950 116 38 17 chr12 15023559 15023986 -129258503 - THE1C-int LTR MaLR -705 875 458 2201 96 13 23 chr12 15023986 15024288 -129258201 - AluSq SINE Alu -14 299 1 9950 116 38 17 chr12 15024288 15024686 -129257803 - THE1C-int LTR MaLR -1122 458 1 1962 107 45 117 chr12 15024686 15025089 -129257400 - THE1C LTR MaLR 0 375 2 5296 247 50 48 chr12 15025089 15025537 -129256952 + MSTD-int LTR MaLR 326 772 -963 7170 62 8 9 chr12 15025537 15027041 -129255448 + SVA Other Other 1 1386 0 5296 247 50 48 chr12 15027041 15027883 -129254606 + MSTD-int LTR MaLR 772 1625 -110 453 192 25 8 chr12 15027897 15028017 -129254472 + CT-rich Low_complexity Low_complexity 3 124 0 2243 102 6 6 chr12 15028017 15028330 -129254159 - AluSp SINE Alu 0 313 1 2273 105 0 0 chr12 15028634 15028938 -129253551 - AluSc SINE Alu -5 304 1 1081 176 21 0 chr12 15029110 15029298 -129253191 + AluSg/x SINE Alu 121 312 0 552 250 29 0 chr12 15029298 15029470 -129253019 + Zaphod DNA AcHobo 1119 1295 -2736 1703 178 48 55 chr12 15029470 15029685 -129252804 - MSTD LTR MaLR 0 396 184 2235 113 0 0 chr12 15029685 15029978 -129252511 - AluSg SINE Alu -17 293 1 1703 178 48 55 chr12 15029978 15030161 -129252328 - MSTD LTR MaLR -212 184 1 544 171 45 0 chr12 15030161 15030272 -129252217 - MSTD-int LTR MaLR 0 1735 1620 929 114 0 8 chr12 15030273 15030404 -129252085 + AluJb SINE Alu 4 133 -179 2443 94 0 0 chr12 15030406 15030714 -129251775 + AluY SINE Alu 1 308 -3 1309 195 128 137 chr12 15031003 15031645 -129250844 - MLT1E1 LTR MaLR 0 654 19 186 118 0 0 chr12 15031825 15031859 -129250630 + (CTA)n Simple_repeat Simple_repeat 2 35 0 344 274 87 149 chr12 15031866 15031965 -129250524 - MIR SINE MIR -10 252 148 2183 94 0 17 chr12 15031965 15032263 -129250226 - AluSg SINE Alu -17 293 1 1674 166 10 14 chr12 15032266 15032433 -129250056 - AluJb SINE Alu -10 302 135 207 0 0 0 chr12 15032440 15032463 -129250026 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2108 123 0 0 chr12 15032463 15032748 -129249741 - AluSx SINE Alu -24 288 1 1674 166 10 14 chr12 15032748 15032869 -129249620 - AluJb SINE Alu -177 135 15 344 274 87 149 chr12 15032869 15033006 -129249483 - MIR SINE MIR -116 146 27 2064 114 45 0 chr12 15033093 15033382 -129249107 - AluSq SINE Alu -11 302 1 190 354 92 0 chr12 15034138 15034203 -129248286 + L2 LINE L2 3243 3313 0 2186 121 10 3 chr12 15034426 15034732 -129247757 + AluSx SINE Alu 1 308 -4 2278 111 0 0 chr12 15034732 15035029 -129247460 + AluSg SINE Alu 1 297 -13 26 0 0 0 chr12 15035204 15035230 -129247259 + AT_rich Low_complexity Low_complexity 1 26 0 219 250 39 19 chr12 15035417 15035469 -129247020 + L2 LINE L2 3022 3074 -198 2281 82 0 29 chr12 15035472 15035778 -129246711 - AluSc SINE Alu -12 297 1 206 286 0 18 chr12 15035890 15035946 -129246543 + L2 LINE L2 3168 3222 -91 2172 113 0 22 chr12 15036088 15036406 -129246083 - AluSx SINE Alu -1 311 1 213 257 164 24 chr12 15036416 15036564 -129245925 - MIR SINE MIR -58 204 39 200 86 29 0 chr12 15037188 15037223 -129245266 + (CGG)n Simple_repeat Simple_repeat 3 38 0 300 237 129 50 chr12 15037397 15037536 -129244953 - L1M2 LINE L1 -6167 682 533 273 216 54 0 chr12 15039796 15039870 -129242619 - L1ME LINE L1 -254 5867 5790 406 322 14 34 chr12 15039873 15040081 -129242408 - L1ME4a LINE L1 -269 5852 5649 315 267 156 37 chr12 15040155 15040290 -129242199 - L1ME4a LINE L1 -2345 5463 5313 1420 206 20 30 chr12 15040457 15040753 -129241736 - AluJb SINE Alu -19 293 1 1686 149 62 0 chr12 15040848 15041137 -129241352 - AluSx SINE Alu -5 307 1 2341 88 7 0 chr12 15041440 15041736 -129240753 - AluSp SINE Alu -15 298 1 21 36 0 0 chr12 15042476 15042504 -129239985 + AT_rich Low_complexity Low_complexity 1 28 0 413 348 118 10 chr12 15044866 15045162 -129237327 - MLT1J LTR MaLR -183 328 1 21 0 0 0 chr12 15045320 15045341 -129237148 + AT_rich Low_complexity Low_complexity 1 21 0 1849 127 3 63 chr12 15045598 15045914 -129236575 - AluJo SINE Alu -15 297 1 204 200 0 0 chr12 15047033 15047088 -129235401 + A-rich Low_complexity Low_complexity 1 55 0 385 230 118 15 chr12 15047143 15047278 -129235211 + MIR SINE MIR 84 232 -30 941 120 0 0 chr12 15048316 15048441 -129234048 + AluSg/x SINE Alu 173 297 -15 1991 147 0 0 chr12 15048485 15048795 -129233694 - AluSx SINE Alu 0 310 1 1979 67 4 4 chr12 15048858 15049112 -129233377 - AluY SINE Alu -14 297 44 2089 117 6 44 chr12 15049112 15049428 -129233061 - AluSx SINE Alu -7 305 1 2367 107 0 0 chr12 15049589 15049898 -129232591 - AluSx SINE Alu -3 309 1 2351 244 144 57 chr12 15050458 15050528 -129231961 - HAL1 LINE L1 -629 1878 1816 2492 131 36 17 chr12 15050528 15050948 -129231541 + MSTA LTR MaLR 1 428 0 2351 244 144 57 chr12 15050948 15052117 -129230372 - HAL1 LINE L1 -691 1816 751 2166 122 10 0 chr12 15052117 15052420 -129230069 - AluSx SINE Alu -6 306 1 2351 244 144 57 chr12 15052420 15052738 -129229751 - HAL1 LINE L1 -1756 751 462 1816 157 7 3 chr12 15052738 15053031 -129229458 - AluSx SINE Alu -18 294 1 2351 244 144 57 chr12 15053031 15053108 -129229381 - HAL1 LINE L1 -2045 462 99 21 36 0 0 chr12 15053217 15053245 -129229244 + AT_rich Low_complexity Low_complexity 1 28 0 935 201 0 34 chr12 15053502 15053681 -129228808 + AluJo SINE Alu 86 258 -54 240 141 35 0 chr12 15054672 15054719 -129227770 - Tigger4(Zombi) DNA MER2_type -2679 52 -1 1506 171 20 47 chr12 15055064 15055362 -129227127 - AluJo SINE Alu -22 290 1 326 236 47 39 chr12 15055548 15055675 -129226814 - L1MC5 LINE L1 -44 7917 7790 765 143 0 0 chr12 15059508 15059634 -129222855 - AluSp/q SINE Alu -7 306 181 1640 111 0 0 chr12 15059634 15059850 -129222639 - AluSp SINE Alu -97 216 1 2284 108 0 0 chr12 15059852 15060147 -129222342 - AluSx SINE Alu -17 295 1 1850 163 24 0 chr12 15060147 15060436 -129222053 - AluSx SINE Alu -12 300 5 2474 56 13 0 chr12 15061120 15061424 -129221065 - AluSp SINE Alu -5 308 1 391 245 185 10 chr12 15061433 15061633 -129220856 + MER102b DNA MER1_type 91 325 -16 185 306 83 0 chr12 15062988 15063060 -129219429 + MIR SINE MIR 67 144 -118 183 281 47 31 chr12 15063072 15063136 -129219353 + MIR SINE MIR 20 84 -178 2193 99 3 0 chr12 15063215 15063521 -129218968 - AluSq SINE Alu 0 307 1 267 257 73 28 chr12 15063547 15063656 -129218833 + MIR SINE MIR 94 207 -55 254 270 180 42 chr12 15064008 15064197 -129218292 - L2 LINE L2 -8 3305 3091 821 250 117 4 chr12 15064211 15064459 -129218030 + MER5C DNA MER1_type 2 277 -47 30 0 0 0 chr12 15067308 15067338 -129215151 + AT_rich Low_complexity Low_complexity 1 30 0 2370 87 0 10 chr12 15068382 15068694 -129213795 + AluSq SINE Alu 4 312 -1 634 318 134 59 chr12 15068850 15069476 -129213013 - L3 LINE CR1 -2 1575 903 336 271 100 59 chr12 15069537 15070113 -129212376 - L1MDa LINE L1 -2838 3702 3033 228 264 39 39 chr12 15070323 15070452 -129212037 - L1MDa LINE L1 -3823 2717 2589 463 299 72 45 chr12 15070705 15071137 -129211352 - L1MDa LINE L1 -869 2032 1633 392 346 108 9 chr12 15071808 15072022 -129210467 - MIR SINE MIR -10 252 18 328 295 70 26 chr12 15072405 15072561 -129209928 - L1M4 LINE L1 -779 5367 5205 2089 125 0 3 chr12 15072694 15072997 -129209492 - AluSq SINE Alu -11 302 1 2131 101 14 0 chr12 15073215 15073512 -129208977 - AluSg SINE Alu -9 301 1 245 109 22 0 chr12 15073562 15073608 -129208881 + CT-rich Low_complexity Low_complexity 2 48 0 1832 186 3 3 chr12 15073616 15073928 -129208561 - AluJo SINE Alu 0 312 1 1832 135 42 3 chr12 15074109 15074398 -129208091 - AluSx SINE Alu -12 300 1 1948 157 0 13 chr12 15076904 15077217 -129205272 - AluJb SINE Alu -1 311 3 1972 127 7 0 chr12 15077600 15077899 -129204590 - AluSq SINE Alu -12 301 1 525 105 0 0 chr12 15078166 15078242 -129204247 - AluSg1 SINE Alu -13 297 222 1101 101 0 7 chr12 15078242 15078390 -129204099 - AluSg1 SINE Alu -160 149 3 220 220 0 0 chr12 15078859 15078909 -129203580 + T-rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr12 15078909 15078931 -129203558 + (GTTTG)n Simple_repeat Simple_repeat 3 24 0 198 261 0 0 chr12 15079276 15079322 -129203167 - L2 LINE L2 -5 3308 3263 234 0 0 0 chr12 15079617 15079643 -129202846 + (CA)n Simple_repeat Simple_repeat 1 26 0 1102 204 26 30 chr12 15081404 15081668 -129200821 - L1MB7 LINE L1 0 6184 5922 2726 195 39 36 chr12 15081668 15082245 -129200244 + Tigger7 DNA MER2_type 1 574 -2013 198 0 0 0 chr12 15082245 15082267 -129200222 + (TATG)n Simple_repeat Simple_repeat 2 23 0 2726 195 39 36 chr12 15082267 15082365 -129200124 + Tigger7 DNA MER2_type 574 2587 0 4686 195 45 31 chr12 15082365 15082910 -129199579 - L1MB7 LINE L1 -255 5923 5388 1054 49 0 28 chr12 15082910 15083054 -129199435 + L1PA7 LINE L1 6015 6154 0 4686 195 45 31 chr12 15083054 15084232 -129198257 - L1MB7 LINE L1 -790 5388 4165 2054 134 0 0 chr12 15084232 15084530 -129197959 + AluSx SINE Alu 1 298 -14 4686 195 45 31 chr12 15084530 15084742 -129197747 - L1MB7 LINE L1 -2013 4165 3958 24 32 0 0 chr12 15085418 15085449 -129197040 + AT_rich Low_complexity Low_complexity 1 31 0 464 304 34 34 chr12 15085470 15085618 -129196871 - MIR3 SINE MIR -24 184 37 353 242 34 153 chr12 15085777 15085868 -129196621 + MLT1I LTR MaLR 80 143 -266 1044 152 141 0 chr12 15085868 15086066 -129196423 - MER30 DNA MER1_type -1 229 4 353 242 34 153 chr12 15086066 15086183 -129196306 + MLT1I LTR MaLR 143 272 -137 629 212 8 15 chr12 15086436 15086568 -129195921 - FLAM_A SINE Alu -2 131 1 1155 194 0 15 chr12 15087264 15087470 -129195019 - MER2 DNA MER2_type -137 208 6 27 62 0 0 chr12 15089602 15089650 -129192839 + AT_rich Low_complexity Low_complexity 1 48 0 28 0 0 0 chr12 15090381 15090409 -129192080 + AT_rich Low_complexity Low_complexity 1 28 0 580 262 76 40 chr12 15090587 15090812 -129191677 - MIR SINE MIR -12 250 18 1609 224 91 37 chr12 15091523 15091848 -129190641 - MER90 LTR ERV1 -6 569 202 2448 75 0 0 chr12 15091848 15092153 -129190336 + AluY SINE Alu 1 305 -6 1609 224 91 37 chr12 15092153 15092367 -129190122 - MER90 LTR ERV1 -373 202 1 785 223 120 24 chr12 15092542 15092834 -129189655 - L1M4 LINE L1 -1986 4160 3841 1385 178 122 36 chr12 15092858 15093247 -129189242 - MLT1C LTR MaLR -56 411 1 234 337 0 12 chr12 15093344 15093427 -129189062 - L1M4 LINE L1 -2292 3854 3773 * 935 221 54 26 chr12 15093423 15093813 -129188676 + L1M4 LINE L1 2863 3263 -2883 405 0 0 0 chr12 15093813 15093858 -129188631 + (CA)n Simple_repeat Simple_repeat 2 46 0 4300 177 46 7 chr12 15093882 15094771 -129187718 - L1MB8 LINE L1 0 6178 5255 346 151 86 11 chr12 15094818 15094911 -129187578 - L1MB8 LINE L1 -873 5273 5174 216 0 0 0 chr12 15095075 15095099 -129187390 + (T)n Simple_repeat Simple_repeat 1 24 0 180 313 167 21 chr12 15097389 15097533 -129184956 + L2 LINE L2 2362 2526 -788 2036 134 10 0 chr12 15098045 15098351 -129184138 + AluJb SINE Alu 1 309 -3 1130 207 0 0 chr12 15098612 15098829 -129183660 - AluJo SINE Alu -1 311 95 2206 90 0 10 chr12 15098863 15099164 -129183325 - AluSg SINE Alu -12 298 1 692 222 123 6 chr12 15099178 15099349 -129183140 + L2 LINE L2 2410 2600 -714 337 202 11 75 chr12 15099316 15099410 -129183079 + L2 LINE L2 3226 3313 0 * 204 333 93 46 chr12 15099349 15099565 -129182924 - L2 LINE L2 -424 2890 2665 * 1435 237 89 59 chr12 15101432 15101960 -129180529 - L2 LINE L2 -1022 2292 1749 352 203 30 36 chr12 15102049 15102194 -129180295 - L1P LINE L1 -731 5420 5270 259 216 0 81 chr12 15102248 15102322 -129180167 + MER58A DNA MER1_type 35 102 -5 322 274 27 0 chr12 15102415 15102488 -129180001 + MER58A DNA MER1_type 149 223 -1 2313 94 0 0 chr12 15102896 15103193 -129179296 - AluY SINE Alu -13 298 2 2308 84 0 19 chr12 15104587 15104725 -129177764 + AluSq SINE Alu 1 140 -173 2138 122 0 0 chr12 15104725 15105021 -129177468 + AluSc SINE Alu 1 296 -13 2308 84 0 19 chr12 15105021 15105193 -129177296 + AluSq SINE Alu 140 305 -8 25 75 0 0 chr12 15105562 15105615 -129176874 + AT_rich Low_complexity Low_complexity 1 53 0 1591 193 0 7 chr12 15106304 15106584 -129175905 + AluJo SINE Alu 1 278 -34 318 127 42 0 chr12 15106597 15106668 -129175821 + GA-rich Low_complexity Low_complexity 2 75 0 271 264 23 58 chr12 15106730 15106817 -129175672 + MIR SINE MIR 20 103 -105 2089 128 0 0 chr12 15107910 15108221 -129174268 + AluSx SINE Alu 1 311 0 184 281 125 0 chr12 15109017 15109081 -129173408 + MER5C DNA MER1_type 1 72 -252 2657 10 0 0 chr12 15109272 15109565 -129172924 + AluYa5 SINE Alu 1 293 -18 2576 156 33 15 chr12 15109897 15110351 -129172138 - MLT1C LTR MaLR -4 463 2 240 364 49 28 chr12 15110781 15110924 -129171565 - MIR3 SINE MIR -62 146 1 1891 152 0 7 chr12 15111049 15111338 -129171151 + AluSx SINE Alu 1 287 -25 432 0 0 0 chr12 15111341 15111389 -129171100 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 25 0 0 0 chr12 15111902 15111927 -129170562 + AT_rich Low_complexity Low_complexity 1 25 0 4309 159 52 54 chr12 15112111 15112988 -129169501 - L1MB5 LINE L1 0 6174 5289 2360 63 10 10 chr12 15112988 15113289 -129169200 - AluY SINE Alu -10 301 1 4309 159 52 54 chr12 15113289 15113436 -129169053 - L1MB5 LINE L1 -885 5289 5143 1169 232 60 6 chr12 15113434 15113783 -129168706 - L1M4c LINE L1 -3911 2473 2106 * 2158 118 0 0 chr12 15114373 15114661 -129167828 + AluSx SINE Alu 1 288 -24 459 351 96 6 chr12 15114917 15115250 -129167239 + L1M4 LINE L1 3803 4165 -1981 363 335 138 18 chr12 15115291 15115631 -129166858 + L1M4 LINE L1 4258 4638 -1508 2313 94 3 0 chr12 15116491 15116789 -129165700 - AluSg SINE Alu -11 299 1 246 140 0 0 chr12 15116884 15116929 -129165560 - Alu SINE Alu -2 306 264 416 148 0 0 chr12 15116929 15116990 -129165499 - AluS SINE Alu -250 61 1 2413 97 0 0 chr12 15117638 15117948 -129164541 - AluSx SINE Alu -2 310 1 2173 119 10 0 chr12 15118779 15119081 -129163408 - AluSx SINE Alu -7 305 1 22 35 0 0 chr12 15119559 15119588 -129162901 + AT_rich Low_complexity Low_complexity 1 29 0 863 192 17 109 chr12 15119724 15120026 -129162463 - L1MD2 LINE L1 -56 6303 6030 6650 191 55 40 chr12 15120050 15122309 -129160180 - L1M3 LINE L1 -410 5585 3286 1174 161 124 5 chr12 15122314 15122532 -129159957 - AluSx SINE Alu -25 287 44 3523 245 63 28 chr12 15122532 15125130 -129157359 - L1M3 LINE L1 -2624 3346 634 2167 112 0 0 chr12 15125130 15125425 -129157064 - AluSq SINE Alu -18 295 1 3523 245 63 28 chr12 15125425 15125675 -129156814 - L1M3 LINE L1 -5336 634 394 257 345 47 35 chr12 15126020 15126252 -129156237 - L1M3 LINE L1 -5649 242 8 2101 105 10 23 chr12 15126397 15126702 -129155787 + AluSx SINE Alu 1 301 -11 1757 167 0 13 chr12 15127083 15127389 -129155100 - AluJo SINE Alu -10 302 1 285 259 0 0 chr12 15127654 15127712 -129154777 + L2 LINE L2 3256 3313 0 571 228 39 31 chr12 15128945 15129072 -129153417 + FLAM_A SINE Alu 2 129 -4 4454 191 61 82 chr12 15129131 15129313 -129153176 - Charlie1a DNA MER1_type -1307 1454 1270 2082 119 3 7 chr12 15129313 15129607 -129152882 + AluSx SINE Alu 1 293 -19 4454 191 61 82 chr12 15129607 15130046 -129152443 - Charlie1a DNA MER1_type -1491 1270 823 1676 181 0 3 chr12 15130046 15130338 -129152151 + AluJb SINE Alu 7 297 -15 4454 191 61 82 chr12 15130338 15131200 -129151289 - Charlie1a DNA MER1_type -1938 823 1 21 71 0 0 chr12 15131643 15131685 -129150804 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr12 15183260 15183295 -129099194 + AT_rich Low_complexity Low_complexity 1 35 0 631 187 45 32 chr12 15183417 15183572 -129098917 + MER103 DNA DNA 1 157 -9 482 83 0 0 chr12 15183658 15183718 -129098771 + AluJb SINE Alu 79 138 -174 315 230 26 44 chr12 15184626 15184739 -129097750 - MER103 DNA DNA -43 123 13 1181 129 56 35 chr12 15185892 15186124 -129096365 + L1MA8 LINE L1 6051 6287 -4 2125 114 41 6 chr12 15186844 15187161 -129095328 - MLT2A1 LTR ERVL -10 434 107 1268 103 71 0 chr12 15187159 15187343 -129095146 - MLT2A2 LTR ERVL -256 197 1 * 12911 74 21 2 chr12 15187343 15189009 -129093480 - HERVL-A2 LTR ERVL 0 5654 3958 * 23974 89 10 3 chr12 15189005 15192730 -129089759 - HERVL-A2 LTR ERVL -1798 3856 1 275 152 0 0 chr12 15192732 15192781 -129089708 - MLT2A1 LTR ERVL -6 447 390 2581 102 32 25 chr12 15192830 15193231 -129089258 - MLT2A1 LTR ERVL -40 404 1 42413 89 11 1 chr12 15193231 15198829 -129083660 - HERVL-A1 LTR ERVL 0 5654 1 332 122 0 0 chr12 15198831 15198880 -129083609 - MLT2A1 LTR ERVL -6 438 390 287 200 0 0 chr12 15198883 15198953 -129083536 + L1MC4 LINE L1 6640 6709 -1333 347 149 39 61 chr12 15198965 15199146 -129083343 + (TA)n Simple_repeat Simple_repeat 1 177 0 2828 71 22 51 chr12 15199171 15199231 -129083258 - MLT2A1 LTR ERVL -45 399 339 2274 115 0 0 chr12 15199231 15199536 -129082953 + AluSx SINE Alu 1 305 -7 2828 71 22 51 chr12 15199536 15199886 -129082603 - MLT2A1 LTR ERVL -105 339 1 869 282 49 51 chr12 15200345 15200735 -129081754 - HAL1 LINE L1 -589 1918 1530 2292 102 3 0 chr12 15203432 15203726 -129078763 - AluSq SINE Alu -18 295 1 1206 110 6 0 chr12 15204254 15204418 -129078071 + AluSp SINE Alu 132 296 -17 22 56 0 0 chr12 15205285 15205321 -129077168 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr12 15206828 15206855 -129075634 + AT_rich Low_complexity Low_complexity 1 27 0 192 97 0 0 chr12 15207109 15207140 -129075349 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 23 0 0 0 chr12 15207202 15207225 -129075264 + AT_rich Low_complexity Low_complexity 1 23 0 219 69 0 0 chr12 15207369 15207398 -129075091 + (TG)n Simple_repeat Simple_repeat 2 30 0 495 201 144 33 chr12 15207878 15208095 -129074394 - MLT1J2 LTR MaLR -174 276 23 2214 113 0 0 chr12 15208638 15208930 -129073559 - AluSq SINE Alu -21 292 1 474 286 174 15 chr12 15209063 15209259 -129073230 + MIR SINE MIR 34 260 -2 21 0 0 0 chr12 15209687 15209708 -129072781 + AT_rich Low_complexity Low_complexity 1 21 0 486 228 296 0 chr12 15210025 15210187 -129072302 + MER63A DNA MER1_type 1 210 0 533 268 132 24 chr12 15210407 15210612 -129071877 - MIR SINE MIR -11 251 25 203 348 98 9 chr12 15212135 15212247 -129070242 + MIR SINE MIR 20 141 -67 665 294 69 10 chr12 15212758 15212962 -129069527 + MIR SINE MIR 26 241 -21 1750 183 0 3 chr12 15213067 15213367 -129069122 + AluSx SINE Alu 1 299 -13 307 253 85 69 chr12 15213373 15213527 -129068962 - MIR SINE MIR -58 150 42 311 315 75 34 chr12 15213626 15213772 -129068717 + MIR SINE MIR 91 242 -20 239 203 174 14 chr12 15214304 15214373 -129068116 + L2 LINE L2 2596 2675 -639 647 255 65 10 chr12 15214507 15214707 -129067782 - MER46C DNA MER2_type -1 337 127 1770 108 27 12 chr12 15214730 15214988 -129067501 + AluSx SINE Alu 35 296 -16 359 226 122 70 chr12 15215190 15215305 -129067184 - MIR SINE MIR -122 140 20 191 280 240 10 chr12 15215444 15215544 -129066945 + L2 LINE L2 3142 3264 -8 2091 129 7 0 chr12 15216733 15217028 -129065461 - AluSx SINE Alu -15 297 1 1220 206 21 4 chr12 15217368 15217606 -129064883 + MLT1A1 LTR MaLR 122 363 -2 317 205 98 36 chr12 15217609 15217721 -129064768 + MER113 DNA MER1_type? 8 126 -395 470 186 25 17 chr12 15217755 15217873 -129064616 - L1MA7 LINE L1 -3 6288 6170 365 221 165 25 chr12 15218140 15218298 -129064191 + MIR3 SINE MIR 23 202 -6 2580 50 0 0 chr12 15218361 15218659 -129063830 - AluY SINE Alu -13 298 1 209 310 17 0 chr12 15218684 15218742 -129063747 - MER91 DNA MER1_type 0 196 138 884 143 0 0 chr12 15219323 15219449 -129063040 - FLAM_C SINE Alu -3 130 5 1812 84 98 40 chr12 15220351 15220626 -129061863 + AluSx SINE Alu 1 291 -21 2389 89 0 0 chr12 15220629 15220932 -129061557 + AluSg SINE Alu 1 303 -7 223 262 214 29 chr12 15221022 15221125 -129061364 + MER5B DNA MER1_type 22 143 -35 2117 125 0 0 chr12 15221337 15221632 -129060857 + AluSx SINE Alu 1 295 -17 1765 161 7 7 chr12 15221723 15222028 -129060461 - AluJo SINE Alu -7 305 1 209 270 0 127 chr12 15222417 15222479 -129060010 + MIR SINE MIR 150 190 -72 2297 107 0 16 chr12 15222479 15222796 -129059693 + AluSx SINE Alu 1 312 0 209 270 0 127 chr12 15222796 15222859 -129059630 + MIR SINE MIR 190 259 -3 232 295 26 0 chr12 15223283 15223361 -129059128 - L2 LINE L2 -2 3311 3232 224 306 56 14 chr12 15223390 15223462 -129059027 - L2 LINE L2 -167 3105 3031 345 293 113 58 chr12 15223587 15223743 -129058746 + L1ME LINE L1 928 1074 -5873 2053 167 55 39 chr12 15223743 15223919 -129058570 + MLT1B LTR MaLR 1 173 -217 2247 107 3 0 chr12 15223919 15224218 -129058271 + AluY SINE Alu 1 300 -11 2053 167 55 39 chr12 15224218 15224425 -129058064 + MLT1B LTR MaLR 173 390 0 345 293 113 58 chr12 15224425 15224668 -129057821 + L1ME LINE L1 1074 1349 -5598 288 290 33 90 chr12 15224822 15225067 -129057422 + L1ME LINE L1 1207 1437 -5510 1818 305 20 49 chr12 15225068 15225767 -129056722 + L1MA6 LINE L1 4 682 -6486 3011 213 72 20 chr12 15226063 15226809 -129055680 + L1MA6 LINE L1 1762 2546 -4622 8464 164 30 6 chr12 15226810 15228378 -129054111 + L1MA6 LINE L1 4380 5984 -1183 4148 147 18 3 chr12 15228378 15229033 -129053456 + L1MA6 LINE L1 6652 7321 0 646 170 0 0 chr12 15229120 15229232 -129053257 + L1MA6 LINE L1 6093 6204 -96 327 200 0 0 chr12 15229229 15229289 -129053200 - L1MA6 LINE L1 -61 6239 6180 * 930 261 24 75 chr12 15229287 15229561 -129052928 + L1ME LINE L1 1396 1682 -5275 2151 122 3 0 chr12 15229561 15229894 -129052595 + AluSq SINE Alu 1 313 0 930 261 24 75 chr12 15229894 15230224 -129052265 + L1ME LINE L1 1682 2142 -4815 375 23 0 0 chr12 15230263 15230307 -129052182 + (CA)n Simple_repeat Simple_repeat 2 45 0 947 261 42 70 chr12 15230310 15230878 -129051611 + L1ME LINE L1 2579 3130 -4008 2355 95 3 0 chr12 15231271 15231575 -129050914 + AluSp SINE Alu 1 305 -8 2545 251 89 88 chr12 15232407 15233622 -129048867 + L1ME LINE L1 3082 4294 -2663 915 191 0 0 chr12 15233622 15233774 -129048715 + FRAM SINE Alu 1 145 -31 239 0 0 31 chr12 15233778 15233810 -129048679 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2545 251 89 88 chr12 15233810 15234518 -129047971 + L1ME LINE L1 4296 5166 -1791 1767 241 90 28 chr12 15234518 15235050 -129047439 + MLT1F1 LTR MaLR 1 565 -2 2545 251 89 88 chr12 15235050 15235271 -129047218 + L1ME LINE L1 5166 5385 -1572 212 0 36 0 chr12 15235575 15235603 -129046886 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1536 166 18 14 chr12 15236214 15236497 -129045992 - AluSx SINE Alu -15 297 14 1601 198 3 17 chr12 15238443 15238741 -129043748 + AluJo SINE Alu 1 294 -18 2451 58 3 0 chr12 15239114 15239408 -129043081 - AluY SINE Alu -2 309 15 293 267 89 10 chr12 15239784 15239885 -129042604 - L2 LINE L2 0 3313 3205 206 338 0 13 chr12 15239914 15239991 -129042498 + L2 LINE L2 3234 3309 -4 2021 134 0 10 chr12 15240594 15240899 -129041590 + AluSx SINE Alu 1 302 -10 2287 102 0 0 chr12 15241387 15241690 -129040799 + AluSx SINE Alu 1 303 -9 1074 201 53 5 chr12 15241869 15242078 -129040411 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr12 15242356 15242377 -129040112 + AT_rich Low_complexity Low_complexity 1 21 0 678 282 93 53 chr12 15242635 15242755 -129039734 - L1MC4a LINE L1 -1884 5924 5810 2104 112 3 3 chr12 15242755 15243074 -129039415 - AluSq SINE Alu 0 319 1 678 282 93 53 chr12 15243074 15243307 -129039182 - L1MC4a LINE L1 -1998 5810 5556 1949 130 18 0 chr12 15243324 15243625 -129038864 + AluSx SINE Alu 1 306 0 305 250 83 0 chr12 15243632 15243728 -129038761 - L1MC4a LINE L1 -2301 5507 5404 33 56 0 0 chr12 15243989 15244043 -129038446 + AT_rich Low_complexity Low_complexity 1 54 0 2113 140 0 0 chr12 15244084 15244377 -129038112 + AluSx SINE Alu 1 293 -19 236 186 82 52 chr12 15244409 15244506 -129037983 - L1MEd LINE L1 -4320 1809 1710 * 306 244 23 0 chr12 15244461 15244547 -129037942 + L1MC4 LINE L1 6615 6702 -1340 229 65 0 0 chr12 15244596 15244642 -129037847 - LTR66 LTR ERVL -171 439 394 232 48 48 0 chr12 15244671 15244713 -129037776 + (TA)n Simple_repeat Simple_repeat 1 44 0 1903 62 0 0 chr12 15247346 15247573 -129034916 + AluY SINE Alu 1 227 -84 23 33 0 0 chr12 15247576 15247606 -129034883 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr12 15247815 15247864 -129034625 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr12 15247978 15248013 -129034476 + AT_rich Low_complexity Low_complexity 1 35 0 1903 132 7 30 chr12 15248018 15248322 -129034167 + AluSg SINE Alu 1 297 -13 440 319 86 41 chr12 15248420 15248765 -129033724 - L1MEd LINE L1 -790 1700 1372 2105 128 0 0 chr12 15248765 15249054 -129033435 - AluSx SINE Alu -23 289 1 440 319 86 41 chr12 15249054 15249570 -129032919 - L1MEd LINE L1 -1118 1372 689 225 132 0 0 chr12 15249585 15249623 -129032866 + (TC)n Simple_repeat Simple_repeat 2 39 0 1917 157 16 0 chr12 15250621 15250927 -129031562 + AluSx SINE Alu 1 311 -1 1049 209 47 14 chr12 15251114 15251325 -129031164 + MER20 DNA MER1_type 1 218 -1 2231 126 3 0 chr12 15251451 15251760 -129030729 - AluSx SINE Alu -2 310 1 387 0 0 0 chr12 15251761 15251804 -129030685 + (TG)n Simple_repeat Simple_repeat 2 44 0 236 403 104 13 chr12 15251995 15252149 -129030340 + MIR SINE MIR 2 169 -93 711 283 73 0 chr12 15252459 15252678 -129029811 + MIR SINE MIR 27 261 -1 2430 100 0 0 chr12 15252755 15253066 -129029423 + AluSx SINE Alu 1 311 -1 2161 114 3 0 chr12 15254250 15254548 -129027941 - AluSp SINE Alu -14 299 1 207 0 0 0 chr12 15254976 15254999 -129027490 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1166 168 10 20 chr12 15255126 15255178 -129027311 + AluJo SINE Alu 84 135 -171 2318 88 7 0 chr12 15255178 15255474 -129027015 + AluSp SINE Alu 1 298 -15 1166 168 10 20 chr12 15255474 15255646 -129026843 + AluJo SINE Alu 135 306 0 2111 117 7 0 chr12 15255663 15255953 -129026536 + AluSg SINE Alu 1 292 -18 823 182 0 8 chr12 15257200 15257332 -129025157 + AluJo SINE Alu 2 132 -180 950 160 21 0 chr12 15257462 15257606 -129024883 + AluJo SINE Alu 137 283 -19 1096 93 0 182 chr12 15258314 15258550 -129023939 - 7SK RNA RNA 0 193 1 294 292 52 0 chr12 15259060 15259156 -129023333 - L2 LINE L2 -6 3266 3166 205 331 160 14 chr12 15259156 15259443 -129023046 + L2 LINE L2 1776 2104 -1210 2061 106 3 3 chr12 15259837 15260147 -129022342 + AluSp SINE Alu 2 311 0 506 325 159 31 chr12 15260167 15260582 -129021907 + L2 LINE L2 2804 3271 -1 358 257 62 28 chr12 15260723 15260867 -129021622 - L2 LINE L2 -832 2482 2334 1218 144 6 0 chr12 15260958 15261138 -129021351 - AluSg/x SINE Alu -20 290 110 202 331 8 87 chr12 15261542 15261669 -129020820 + L2 LINE L2 3136 3252 -20 24 53 0 0 chr12 15261753 15261791 -129020698 + AT_rich Low_complexity Low_complexity 1 38 0 1514 163 4 4 chr12 15261812 15262070 -129020419 - AluSq SINE Alu -53 260 3 729 300 57 12 chr12 15262219 15262625 -129019864 + L1ME2 LINE L1 5422 5853 -311 1933 88 19 0 chr12 15262932 15263195 -129019294 - AluY SINE Alu -22 289 22 270 170 4 178 chr12 15263528 15263787 -129018702 + L1MA3 LINE L1 5837 6050 -255 957 89 0 0 chr12 15263916 15264039 -129018450 - AluSp SINE Alu -190 123 1 2172 111 3 16 chr12 15264073 15264380 -129018109 + AluSp SINE Alu 1 303 -10 5432 106 20 30 chr12 15264391 15265220 -129017269 + L1PA13 LINE L1 5343 6163 0 1603 113 0 0 chr12 15265202 15265431 -129017058 + L1P4 LINE L1 5594 5822 -346 * 203 0 37 0 chr12 15266688 15266715 -129015774 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 755 156 0 0 chr12 15266715 15266824 -129015665 - FRAM SINE Alu -28 148 40 28 0 0 0 chr12 15267171 15267199 -129015290 + AT_rich Low_complexity Low_complexity 1 28 0 2382 84 3 10 chr12 15267219 15267530 -129014959 - AluSp SINE Alu -4 309 1 283 256 91 16 chr12 15268136 15268257 -129014232 - LTR16C LTR ERVL -63 428 299 2237 98 3 7 chr12 15268929 15269226 -129013263 - AluSp SINE Alu -17 296 1 2059 135 3 7 chr12 15269547 15269850 -129012639 + AluSx SINE Alu 1 302 -10 1992 146 7 0 chr12 15270608 15270909 -129011580 + AluSx SINE Alu 1 303 -9 580 294 25 0 chr12 15271038 15271198 -129011291 - MIR SINE MIR -79 183 20 1003 214 159 31 chr12 15271327 15271584 -129010905 + AluJo SINE Alu 1 290 -12 1922 113 4 0 chr12 15272556 15272813 -129009676 + AluSx SINE Alu 3 260 -52 186 73 36 73 chr12 15272816 15272871 -129009618 + (TAAAAA)n Simple_repeat Simple_repeat 3 55 0 205 331 8 87 chr12 15272956 15273083 -129009406 - L2 LINE L2 -20 3252 3136 207 0 0 0 chr12 15273942 15273965 -129008524 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 270 260 125 10 chr12 15274056 15274160 -129008329 + MIR SINE MIR 60 175 -87 23 0 0 0 chr12 15274160 15274183 -129008306 + AT_rich Low_complexity Low_complexity 1 23 0 2050 112 3 0 chr12 15274185 15274481 -129008008 + AluSx SINE Alu 2 298 -14 21 36 0 0 chr12 15274915 15274943 -129007546 + GC_rich Low_complexity Low_complexity 1 28 0 234 192 0 0 chr12 15274983 15275035 -129007454 + (CAG)n Simple_repeat Simple_repeat 1 52 0 21 36 0 0 chr12 15275035 15275063 -129007426 + GC_rich Low_complexity Low_complexity 1 28 0 2352 49 7 0 chr12 15275967 15276277 -129006212 + AluY SINE Alu 1 312 0 643 193 0 0 chr12 15276594 15276708 -129005781 + FLAM_C SINE Alu 3 116 -17 23 0 0 0 chr12 15276708 15276731 -129005758 + AT_rich Low_complexity Low_complexity 1 23 0 392 162 190 92 chr12 15277170 15277312 -129005177 - L2 LINE L2 0 3313 3158 831 123 198 27 chr12 15277317 15277504 -129004985 - MER20 DNA MER1_type 0 219 1 2811 92 2 8 chr12 15277590 15278184 -129004305 + MER4A LTR ERV1 7 664 0 2145 129 0 3 chr12 15278526 15278828 -129003661 + AluSx SINE Alu 5 305 -7 252 285 31 23 chr12 15278884 15279014 -129003475 + HERVL LTR ERVL 5206 5336 -318 873 117 8 16 chr12 15279181 15279309 -129003180 - FLAM_C SINE Alu -3 140 14 642 278 16 21 chr12 15279621 15279815 -129002674 - MLT1J2 LTR MaLR 0 450 258 555 180 31 23 chr12 15279815 15279943 -129002546 - MER119 DNA MER1_type 0 583 455 225 264 97 0 chr12 15279944 15280016 -129002473 - MER119 DNA MER1_type -449 134 56 25 31 0 0 chr12 15280191 15280223 -129002266 + AT_rich Low_complexity Low_complexity 1 32 0 2004 116 7 27 chr12 15280223 15280515 -129001974 - AluSx SINE Alu -26 286 1 281 252 19 84 chr12 15280531 15280686 -129001803 - MLT1J LTR MaLR -305 180 1 2140 118 0 0 chr12 15281468 15281776 -129000713 + AluSg SINE Alu 3 310 0 757 163 0 16 chr12 15281916 15282045 -129000444 + FLAM_C SINE Alu 1 127 -6 1532 184 7 39 chr12 15283086 15283202 -128999287 + AluJo SINE Alu 1 119 -193 186 43 0 0 chr12 15283202 15283225 -128999264 + (CA)n Simple_repeat Simple_repeat 2 24 0 1532 184 7 39 chr12 15283225 15283417 -128999072 + AluJo SINE Alu 119 299 -13 468 250 19 0 chr12 15284284 15284388 -128998101 + MER45 DNA AcHobo 3 108 -932 660 210 48 0 chr12 15284388 15284512 -128997977 - AluJb SINE Alu -52 260 131 285 102 0 0 chr12 15284547 15284596 -128997893 + Alu SINE Alu 253 301 0 2044 101 49 7 chr12 15285093 15285244 -128997245 - AluSg SINE Alu -10 300 157 180 0 0 0 chr12 15285244 15285264 -128997225 + (TA)n Simple_repeat Simple_repeat 1 20 0 2044 101 49 7 chr12 15285264 15285400 -128997089 - AluSg SINE Alu -153 157 1 2011 127 25 0 chr12 15285771 15286055 -128996434 + AluSx SINE Alu 1 291 -21 24 0 0 0 chr12 15286055 15286079 -128996410 + AT_rich Low_complexity Low_complexity 1 24 0 624 152 0 0 chr12 15286291 15286396 -128996093 + FRAM SINE Alu 68 172 -4 646 165 0 0 chr12 15286699 15286796 -128995693 - FLAM_A SINE Alu -44 98 2 25 0 0 0 chr12 15286841 15286866 -128995623 + AT_rich Low_complexity Low_complexity 1 25 0 2035 117 43 0 chr12 15286936 15287218 -128995271 - AluSx SINE Alu -18 294 1 1989 121 13 48 chr12 15287218 15287396 -128995093 - AluSx SINE Alu -9 303 139 1887 124 10 14 chr12 15287396 15287686 -128994803 - AluSq SINE Alu -24 289 1 1989 121 13 48 chr12 15287686 15287821 -128994668 - AluSx SINE Alu -173 139 1 640 179 60 7 chr12 15287873 15288024 -128994465 + MER76 LTR ERV 530 688 0 22 0 0 0 chr12 15288060 15288082 -128994407 + AT_rich Low_complexity Low_complexity 1 22 0 346 351 123 32 chr12 15288088 15288339 -128994150 - L2 LINE L2 -5 3267 2994 16372 126 43 55 chr12 15288429 15288901 -128993588 - Tigger3(Golem) DNA MER2_type 0 3029 2553 1911 125 36 4 chr12 15288901 15289180 -128993309 + AluSq SINE Alu 1 288 -25 207 0 0 0 chr12 15289183 15289206 -128993283 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 16372 126 43 55 chr12 15289206 15289717 -128992772 - Tigger3(Golem) DNA MER2_type -478 2551 2036 2184 118 0 3 chr12 15289717 15290021 -128992468 - AluSq SINE Alu -10 303 1 16372 126 43 55 chr12 15290021 15290770 -128991719 - Tigger3(Golem) DNA MER2_type -993 2036 1280 2120 113 30 3 chr12 15290770 15291070 -128991419 - AluSq SINE Alu -5 308 1 16372 126 43 55 chr12 15291070 15291461 -128991028 - Tigger3(Golem) DNA MER2_type -1749 1280 886 2168 111 3 0 chr12 15291461 15291750 -128990739 - AluSp SINE Alu -23 290 1 16372 126 43 55 chr12 15291750 15292340 -128990149 - Tigger3(Golem) DNA MER2_type -2143 886 347 2230 102 0 0 chr12 15292340 15292625 -128989864 - AluSx SINE Alu -27 285 1 16372 126 43 55 chr12 15292625 15292968 -128989521 - Tigger3(Golem) DNA MER2_type -2682 347 1 279 246 15 15 chr12 15292975 15293040 -128989449 - MER2 DNA MER2_type -1 344 280 1007 150 10 45 chr12 15293066 15293266 -128989223 - MER2 DNA MER2_type -134 211 19 305 276 46 0 chr12 15293289 15293376 -128989113 - L1MC4 LINE L1 -1339 6703 6613 264 234 0 0 chr12 15293377 15293441 -128989048 + (TA)n Simple_repeat Simple_repeat 2 65 0 310 221 0 63 chr12 15293448 15293543 -128988946 - L1MC4 LINE L1 -1340 6702 6614 282 292 0 0 chr12 15293549 15293727 -128988762 + (TA)n Simple_repeat Simple_repeat 2 179 0 314 276 46 0 chr12 15293733 15293820 -128988669 - L1MC4 LINE L1 -1339 6703 6613 347 262 37 19 chr12 15293851 15293958 -128988531 - L1MC4 LINE L1 -1339 6703 6595 363 241 46 0 chr12 15293999 15294086 -128988403 - L1MC4 LINE L1 -1339 6703 6613 261 226 26 0 chr12 15294089 15294204 -128988285 + (TA)n Simple_repeat Simple_repeat 1 118 0 2023 134 3 0 chr12 15294341 15294652 -128987837 + AluSx SINE Alu 1 312 0 1020 156 0 0 chr12 15294962 15295122 -128987367 - AluSg/x SINE Alu -13 299 140 1819 168 7 0 chr12 15295482 15295768 -128986721 - AluJb SINE Alu -24 288 1 707 176 0 16 chr12 15295782 15295907 -128986582 - FLAM_C SINE Alu -9 134 12 5656 142 100 40 chr12 15296043 15297248 -128985241 - MER52C LTR ERV1 0 1278 1 2004 103 0 0 chr12 15297493 15297755 -128984734 + AluSx SINE Alu 35 296 -16 187 211 0 0 chr12 15298390 15298428 -128984061 + MER5C DNA MER1_type 87 124 -200 312 168 84 42 chr12 15298451 15298546 -128983943 + MER5C DNA MER1_type 226 324 0 2162 101 10 3 chr12 15298558 15298855 -128983634 - AluSc SINE Alu -10 299 1 21 0 0 0 chr12 15299390 15299411 -128983078 + AT_rich Low_complexity Low_complexity 1 21 0 301 281 39 51 chr12 15299787 15300043 -128982446 - HAL1 LINE L1 -10 2497 2245 398 205 0 0 chr12 15300212 15300290 -128982199 - L1MD3 LINE L1 -348 7647 7570 1799 103 22 7 chr12 15300293 15300565 -128981924 - L1PA13 LINE L1 -3 6811 6536 18511 175 17 25 chr12 15300567 15300779 -128981710 - L1PA13 LINE L1 -458 6354 6142 2026 148 6 3 chr12 15300779 15301090 -128981399 - AluSx SINE Alu 0 312 1 18511 175 17 25 chr12 15301090 15301561 -128980928 - L1PA13 LINE L1 -670 6142 5669 2163 120 0 10 chr12 15301561 15301869 -128980620 + AluSx SINE Alu 1 305 -7 18511 175 17 25 chr12 15301869 15302453 -128980036 - L1PA13 LINE L1 -1143 5669 5082 2072 140 14 0 chr12 15302453 15302745 -128979744 - AluSx SINE Alu -16 296 1 18511 175 17 25 chr12 15302745 15306057 -128976432 - L1PA13 LINE L1 -1730 5082 1817 2294 125 0 0 chr12 15306057 15306361 -128976128 - AluSx SINE Alu 0 312 9 18511 175 17 25 chr12 15306361 15306429 -128976060 - L1PA13 LINE L1 -4995 1817 1750 1499 151 34 0 chr12 15306424 15306662 -128975827 - L1PA13 LINE L1 -6540 247 2 * 3366 233 60 42 chr12 15306673 15307348 -128975141 - L1MC4a LINE L1 -404 7404 6742 1650 154 39 51 chr12 15307348 15307660 -128974829 + AluJb SINE Alu 1 308 -4 3366 233 60 42 chr12 15307660 15308360 -128974129 - L1MC4a LINE L1 -1066 6742 6035 1844 180 0 10 chr12 15308360 15308671 -128973818 - AluJb SINE Alu -2 310 3 3366 233 60 42 chr12 15308671 15308873 -128973616 - L1MC4a LINE L1 -1773 6035 5838 6332 213 70 8 chr12 15308896 15311262 -128971227 - L1MA4 LINE L1 -5 6295 3602 183 42 0 0 chr12 15311262 15311286 -128971203 + (TGG)n Simple_repeat Simple_repeat 3 26 0 6332 213 70 8 chr12 15311286 15312050 -128970439 - L1MA4 LINE L1 -2698 3602 2887 1072 282 59 14 chr12 15312050 15312540 -128969949 - L1ME1 LINE L1 -316 6244 5733 830 249 76 30 chr12 15312629 15313149 -128969340 - L1ME1 LINE L1 -4467 2136 1446 * 993 180 15 0 chr12 15313148 15313354 -128969135 - L1 LINE L1 -1193 4953 4745 315 265 42 21 chr12 15313353 15313542 -128968947 - L1ME1 LINE L1 -4954 1586 1394 * 1062 135 11 0 chr12 15313568 15313753 -128968736 - L1M2 LINE L1 -691 7028 6842 12588 197 40 58 chr12 15313786 15313933 -128968556 - L1M2 LINE L1 -746 6819 6671 243 0 0 0 chr12 15313933 15313960 -128968529 + (TG)n Simple_repeat Simple_repeat 2 28 0 12588 197 40 58 chr12 15313960 15317204 -128965285 - L1M2 LINE L1 -894 6671 3783 2284 123 3 0 chr12 15317204 15317506 -128964983 - AluSx SINE Alu -9 303 1 12588 197 40 58 chr12 15317506 15319061 -128963428 - L1M2 LINE L1 -3782 3783 2202 399 412 15 0 chr12 15319328 15319600 -128962889 - L1M2 LINE L1 -5797 1699 1424 191 288 119 0 chr12 15320751 15320810 -128961679 - L2 LINE L2 -49 3223 3158 210 176 40 14 chr12 15322937 15323011 -128959478 + (TA)n Simple_repeat Simple_repeat 2 77 0 429 322 47 6 chr12 15323376 15323547 -128958942 - MER5A DNA MER1_type -1 188 11 1967 161 77 20 chr12 15324246 15324649 -128957840 + MSTB LTR MaLR 1 426 0 203 327 73 74 chr12 15325058 15325321 -128957168 - MIR3 SINE MIR 0 262 1 1588 192 7 33 chr12 15325572 15325879 -128956610 + AluJo SINE Alu 1 299 -13 1689 173 0 0 chr12 15325904 15326176 -128956313 + AluJo SINE Alu 37 308 -4 886 208 126 95 chr12 15327488 15327877 -128954612 + MER57B LTR ERV1 3 434 0 532 305 40 30 chr12 15330380 15330580 -128951909 - MIR3 SINE MIR 0 208 7 1914 154 133 13 chr12 15330959 15331341 -128951148 + MSTA LTR MaLR 1 428 0 2371 95 0 0 chr12 15331508 15331804 -128950685 + AluSq SINE Alu 1 296 -17 31 0 0 0 chr12 15331804 15331835 -128950654 + AT_rich Low_complexity Low_complexity 1 31 0 268 237 87 11 chr12 15332541 15332636 -128949853 + MIR SINE MIR 5 106 -102 2286 89 0 20 chr12 15332677 15332981 -128949508 - AluY SINE Alu -12 299 2 375 253 53 21 chr12 15333256 15333409 -128949080 + L1ME LINE L1 5244 5403 -743 1959 113 67 0 chr12 15333409 15333691 -128948798 + AluSx SINE Alu 3 303 -9 578 255 80 12 chr12 15333771 15334022 -128948467 + L1ME LINE L1 5537 5804 -317 330 249 6 133 chr12 15334579 15334744 -128947745 + MER5A DNA MER1_type 18 161 -28 202 270 6 126 chr12 15334597 15334771 -128947718 - MER5A DNA MER1_type -19 170 18 * 845 189 35 0 chr12 15334852 15335021 -128947468 + MER5B DNA MER1_type 1 175 -3 539 321 64 5 chr12 15335285 15335472 -128947017 - MIR3 SINE MIR -7 201 4 205 311 160 8 chr12 15335643 15335762 -128946727 + MER5A DNA MER1_type 43 179 -10 4434 63 51 5 chr12 15336412 15337019 -128945470 + PABL_A LTR ERV1 26 660 0 308 245 19 38 chr12 15337076 15337182 -128945307 - MER5B DNA MER1_type -3 175 72 589 149 9 0 chr12 15337191 15337298 -128945191 + MER53 DNA DNA 1 108 -81 194 224 52 35 chr12 15337302 15337360 -128945129 - MER5B DNA MER1_type -113 65 7 1926 171 9 6 chr12 15337736 15338076 -128944413 - MER2 DNA MER2_type -2 342 2 7654 23 11 0 chr12 15338580 15339712 -128942777 - L1PA3 LINE L1 0 6155 5019 14291 154 39 17 chr12 15340029 15344156 -128938333 + L1MA4A LINE L1 841 5139 -1866 2110 105 0 14 chr12 15344156 15344451 -128938038 + AluSx SINE Alu 1 291 -21 14291 154 39 17 chr12 15344451 15346338 -128936151 + L1MA4A LINE L1 5139 6983 -22 2151 106 0 26 chr12 15346359 15346671 -128935818 + AluSx SINE Alu 1 304 -8 1261 238 139 26 chr12 15346742 15347195 -128935294 + MLT1D LTR MaLR 1 504 -1 1886 143 19 19 chr12 15347534 15347842 -128934647 + AluJb SINE Alu 5 312 0 209 300 62 25 chr12 15347946 15348026 -128934463 + L2 LINE L2 3189 3271 -1 208 296 19 0 chr12 15348867 15348921 -128933568 + L2 LINE L2 3255 3309 -4 2276 103 0 0 chr12 15349006 15349297 -128933192 + AluSg SINE Alu 1 291 -19 35 0 0 0 chr12 15349315 15349350 -128933139 + AT_rich Low_complexity Low_complexity 1 35 0 365 303 0 0 chr12 15350558 15350647 -128931842 + MIR3 SINE MIR 113 201 -7 187 290 129 32 chr12 15351349 15351442 -128931047 + MIR SINE MIR 59 160 -102 1080 106 0 95 chr12 15351558 15351737 -128930752 + AluSg/x SINE Alu 143 304 -8 1076 146 12 0 chr12 15352090 15352255 -128930234 - AluSg/x SINE Alu -9 303 137 534 176 77 94 chr12 15352351 15352521 -128929968 - MIR SINE MIR 0 262 96 1986 134 0 0 chr12 15353174 15353485 -128929004 - AluSx SINE Alu 0 311 1 241 211 101 9 chr12 15353982 15354091 -128928398 - L1ME4a LINE L1 -125 5996 5878 246 293 236 28 chr12 15354118 15354436 -128928053 - L2 LINE L2 0 3313 2930 368 192 85 67 chr12 15354806 15354984 -128927505 + MER63 DNA MER1_type 27 1061 0 21 36 0 0 chr12 15355089 15355117 -128927372 + AT_rich Low_complexity Low_complexity 1 28 0 395 261 57 90 chr12 15355186 15355292 -128927197 - L1M4 LINE L1 -1820 4326 4218 2062 113 0 3 chr12 15355292 15355609 -128926880 - AluSg SINE Alu 0 316 1 395 261 57 90 chr12 15355609 15355648 -128926841 - L1M4 LINE L1 -1928 4218 4179 2293 138 43 36 chr12 15355648 15356090 -128926399 + MER65A LTR ERV1 1 445 0 395 261 57 90 chr12 15356090 15356153 -128926336 - L1M4 LINE L1 -1967 4179 4123 299 333 54 0 chr12 15356399 15356510 -128925979 + L2 LINE L2 2958 3074 -239 405 269 145 16 chr12 15356830 15357023 -128925466 + L1M4 LINE L1 3693 3910 -2236 21 0 0 0 chr12 15357242 15357263 -128925226 + AT_rich Low_complexity Low_complexity 1 21 0 2277 99 0 0 chr12 15357603 15357895 -128924594 - AluSc SINE Alu -17 292 1 336 215 83 83 chr12 15359446 15359506 -128922983 + L2 LINE L2 3170 3229 -84 2069 136 0 7 chr12 15359506 15359824 -128922665 - AluSx SINE Alu 0 312 1 336 215 83 83 chr12 15359824 15359907 -128922582 + L2 LINE L2 3228 3313 0 243 192 19 0 chr12 15359907 15359959 -128922530 + GA-rich Low_complexity Low_complexity 1 53 0 346 301 16 72 chr12 15360817 15361010 -128921479 - Charlie8 DNA MER1_type -2235 182 1 188 388 41 0 chr12 15361101 15361199 -128921290 + MIR SINE MIR 160 261 -1 858 250 130 61 chr12 15362196 15362572 -128919917 + MER57A LTR ERV1 1 403 0 364 224 60 17 chr12 15363255 15363371 -128919118 + MIR SINE MIR 72 192 -70 1902 121 80 3 chr12 15364172 15364485 -128918004 - MER1B DNA MER1_type 0 337 1 2026 114 59 31 chr12 15364845 15365169 -128917320 + MER1B DNA MER1_type 5 337 0 395 300 53 60 chr12 15365177 15365557 -128916932 - L1ME LINE L1 -524 5638 5262 369 291 137 11 chr12 15365558 15365740 -128916749 - L1ME LINE L1 -885 5261 5057 1973 146 3 0 chr12 15365744 15366038 -128916451 + AluSx SINE Alu 1 295 -17 206 103 0 26 chr12 15366193 15366232 -128916257 + (TATAA)n Simple_repeat Simple_repeat 5 42 0 2307 93 7 3 chr12 15366392 15366692 -128915797 - AluSg SINE Alu -9 301 1 549 317 35 25 chr12 15367711 15367913 -128914576 + MIR3 SINE MIR 2 205 -3 376 262 0 99 chr12 15368024 15368172 -128914317 - MIR SINE MIR -72 136 3 28 0 0 0 chr12 15368514 15368542 -128913947 + AT_rich Low_complexity Low_complexity 1 28 0 2029 138 21 0 chr12 15368791 15369082 -128913407 - AluSx SINE Alu -15 297 1 2247 98 7 7 chr12 15369743 15370048 -128912441 + AluSx SINE Alu 1 305 -7 260 217 70 26 chr12 15370418 15370533 -128911956 + HAL1 LINE L1 2240 2359 -148 2224 109 3 3 chr12 15370630 15370932 -128911557 - AluSq SINE Alu -11 302 1 205 254 73 91 chr12 15371048 15371158 -128911331 + L2 LINE L2 3189 3296 -17 210 286 0 0 chr12 15371586 15371635 -128910854 + (CCA)n Simple_repeat Simple_repeat 1 49 0 33 43 0 0 chr12 15371828 15371875 -128910614 + AT_rich Low_complexity Low_complexity 1 47 0 215 343 97 22 chr12 15372040 15372174 -128910315 - MIR3 SINE MIR -11 197 54 321 26 0 0 chr12 15372197 15372235 -128910254 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 2228 93 0 13 chr12 15372285 15372587 -128909902 + AluSg SINE Alu 5 302 -8 273 346 127 16 chr12 15372596 15373012 -128909477 - L2 LINE L2 -240 3032 2575 * 333 258 113 21 chr12 15373002 15373099 -128909390 + L2 LINE L2 3207 3312 -1 2217 204 27 94 chr12 15373218 15373802 -128908687 - LTR9 LTR ERV1 0 612 75 2241 108 0 6 chr12 15373802 15374116 -128908373 + AluSx SINE Alu 1 312 0 2217 204 27 94 chr12 15374116 15374187 -128908302 - LTR9 LTR ERV1 -537 75 1 544 16 0 0 chr12 15374348 15374409 -128908080 + L1P1 LINE L1 5519 5579 -576 810 221 139 13 chr12 15375041 15375344 -128907145 - L1ME4a LINE L1 -5 6116 5776 1917 142 6 55 chr12 15375344 15375533 -128906956 - AluJo SINE Alu -3 309 141 2241 105 0 0 chr12 15375533 15375818 -128906671 - AluSg SINE Alu -25 285 1 1917 142 6 55 chr12 15375818 15375953 -128906536 - AluJo SINE Alu -171 141 1 1884 166 3 34 chr12 15376545 15376865 -128905624 - AluJb SINE Alu -2 310 1 237 284 45 11 chr12 15377447 15377535 -128904954 - MIR3 SINE MIR -33 175 85 1879 106 31 7 chr12 15377866 15378158 -128904331 + THE1A LTR MaLR 1 299 -56 2386 78 10 0 chr12 15378188 15378494 -128903995 - THE1A LTR MaLR -46 309 1 1710 116 0 0 chr12 15378562 15378787 -128903702 - AluSx SINE Alu -87 225 1 268 333 7 41 chr12 15380634 15380781 -128901708 + MIR SINE MIR 7 148 -114 492 270 81 27 chr12 15380841 15381026 -128901463 - MIR SINE MIR -1 261 67 2181 110 13 7 chr12 15382277 15382587 -128899902 + AluSx SINE Alu 1 312 0 239 250 18 0 chr12 15383672 15383728 -128898761 + MER94 DNA DNA 78 134 0 31 44 0 0 chr12 15384152 15384197 -128898292 + AT_rich Low_complexity Low_complexity 1 45 0 321 260 77 10 chr12 15384756 15384860 -128897629 + L2 LINE L2 3181 3291 -22 2303 99 0 28 chr12 15384907 15385229 -128897260 - AluSq SINE Alu 0 313 1 794 194 0 8 chr12 15385340 15385464 -128897025 - FLAM_A SINE Alu -10 123 1 368 307 45 40 chr12 15385464 15385666 -128896823 - MIR SINE MIR -11 251 49 884 163 0 15 chr12 15386580 15386715 -128895774 - FLAM_C SINE Alu 0 133 1 292 248 158 65 chr12 15387264 15387446 -128895043 - MIR3 SINE MIR -1 207 2 1032 81 0 7 chr12 15388022 15388158 -128894331 - L1PB1 LINE L1 -2 6149 6015 2405 119 5 39 chr12 15389525 15389911 -128892578 + THE1C LTR MaLR 1 373 -2 222 171 24 0 chr12 15390773 15390814 -128891675 - L2 LINE L2 -8 3264 3223 * 234 208 21 0 chr12 15390780 15390828 -128891661 - MIR SINE MIR -10 252 204 217 257 135 14 chr12 15391003 15391077 -128891412 + L2 LINE L2 3189 3271 -1 656 114 0 50 chr12 15391873 15392013 -128890476 + (TTCC)n Simple_repeat Simple_repeat 1 133 0 1457 204 6 22 chr12 15392013 15392326 -128890163 - AluJo SINE Alu -4 308 1 185 275 100 38 chr12 15392420 15392500 -128889989 + L2 LINE L2 3170 3254 -18 214 198 81 47 chr12 15393018 15393104 -128889385 - MIR SINE MIR -39 223 135 188 288 0 15 chr12 15394562 15394628 -128887861 + MER5A DNA MER1_type 97 161 -28 1950 153 3 3 chr12 15394687 15394987 -128887502 + AluJb SINE Alu 1 300 -12 183 188 0 0 chr12 15395578 15395626 -128886863 + CT-rich Low_complexity Low_complexity 1 48 0 571 221 0 15 chr12 15395626 15395757 -128886732 - L1MB7 LINE L1 -10 6174 6046 252 216 0 0 chr12 15395948 15395999 -128886490 - MIR SINE MIR -6 256 206 1705 271 104 12 chr12 15396071 15396792 -128885697 - L2 LINE L2 -239 3074 2281 2417 84 3 0 chr12 15397882 15398190 -128884299 - AluY SINE Alu -2 309 1 285 309 36 18 chr12 15398222 15398332 -128884157 + MIR SINE MIR 35 146 -62 267 198 86 49 chr12 15399123 15399204 -128883285 + MIR3 SINE MIR 84 167 -41 * 671 282 19 19 chr12 15399195 15399408 -128883081 - MIR SINE MIR -18 244 32 2011 192 54 54 chr12 15399427 15399915 -128882574 + Charlie1b DNA MER1_type 1 491 -2270 2338 102 0 3 chr12 15399915 15400218 -128882271 + AluSp SINE Alu 1 302 -11 2011 192 54 54 chr12 15400218 15400251 -128882238 + Charlie1b DNA MER1_type 490 522 -1 381 324 22 7 chr12 15401120 15401256 -128881233 - MIR SINE MIR -119 143 6 216 274 16 0 chr12 15401288 15401350 -128881139 + (CAA)n Simple_repeat Simple_repeat 2 64 0 500 331 28 12 chr12 15401350 15401604 -128880885 - MIR SINE MIR -3 259 2 216 326 188 7 chr12 15401685 15401829 -128880660 + MIR SINE MIR 81 250 -12 208 382 65 8 chr12 15401827 15401950 -128880539 - MIR3 SINE MIR -76 132 3 * 21 0 0 0 chr12 15402646 15402667 -128879822 + AT_rich Low_complexity Low_complexity 1 21 0 1687 61 0 0 chr12 15402773 15402970 -128879519 + AluY SINE Alu 105 301 -10 832 174 8 0 chr12 15403174 15403306 -128879183 - FLAM_C SINE Alu 0 133 1 955 56 0 31 chr12 15404270 15404431 -128878058 + (TA)n Simple_repeat Simple_repeat 1 156 0 7562 51 10 0 chr12 15404431 15405361 -128877128 - L1PA7 LINE L1 -19 6135 5204 2487 57 0 25 chr12 15405498 15405850 -128876639 - AluY SINE Alu 0 345 2 571 311 83 14 chr12 15405972 15406435 -128876054 - L2 LINE L2 -199 3073 2561 347 89 0 54 chr12 15406465 15406521 -128875968 + FLAM_A SINE Alu 80 132 -1 1672 181 0 30 chr12 15406523 15406826 -128875663 + AluJo SINE Alu 1 294 -18 347 326 144 6 chr12 15406840 15407021 -128875468 - L2 LINE L2 -786 2528 2323 327 357 67 8 chr12 15407676 15407914 -128874575 - L2 LINE L2 -2532 782 531 22 0 0 0 chr12 15407929 15407951 -128874538 + AT_rich Low_complexity Low_complexity 1 22 0 186 339 16 16 chr12 15408566 15408628 -128873861 - MIR SINE MIR -131 77 16 1207 193 10 82 chr12 15409021 15409326 -128873163 + MLT1A2 LTR MaLR 2 284 -90 476 139 0 47 chr12 15409595 15409681 -128872808 + MLT1A2 LTR MaLR 284 365 0 2266 120 0 3 chr12 15409728 15410036 -128872453 + AluSx SINE Alu 1 307 -5 2347 79 6 13 chr12 15410721 15411036 -128871453 + AluSq SINE Alu 1 313 0 21 0 0 0 chr12 15411197 15411218 -128871271 + AT_rich Low_complexity Low_complexity 1 21 0 519 183 0 0 chr12 15411358 15411440 -128871049 + AluJ/FLAM SINE Alu 6 87 -225 2380 81 0 0 chr12 15411644 15411951 -128870538 + AluY SINE Alu 1 307 -4 326 269 157 0 chr12 15412018 15412126 -128870363 - L2 LINE L2 -1 3312 3188 2494 152 34 7 chr12 15412360 15412767 -128869722 - MSTB LTR MaLR 0 426 9 3591 44 0 70 chr12 15412770 15413252 -128869237 - LTR7 LTR ERV1 -2 448 1 2449 84 50 16 chr12 15413252 15413631 -128868858 - HERVH LTR ERV1 0 7713 7322 1364 119 20 0 chr12 15413629 15413830 -128868659 - HERVH LTR ERV1 -1894 5819 5615 * 2504 175 0 2 chr12 15413858 15414269 -128868220 - HERVH LTR ERV1 -2564 5149 4740 999 149 0 7 chr12 15414268 15414422 -128868067 - HERVH LTR ERV1 -4069 3644 3492 * 874 131 41 0 chr12 15414412 15414557 -128867932 - HERVH LTR ERV1 -4423 3290 3140 * 20819 88 21 13 chr12 15414536 15417506 -128864983 - HERVH LTR ERV1 -4718 2995 1 3629 39 0 70 chr12 15417508 15417990 -128864499 - LTR7 LTR ERV1 -2 448 1 287 337 0 11 chr12 15418877 15418972 -128863517 + MIR SINE MIR 48 141 -121 218 160 0 100 chr12 15419587 15419637 -128862852 + MIR SINE MIR 218 262 0 2690 62 103 0 chr12 15420321 15420660 -128861829 + MER51B LTR ERV1 4 377 0 1880 229 31 84 chr12 15421646 15422288 -128860201 - LTR9 LTR ERV1 0 612 5 473 173 135 0 chr12 15422410 15422514 -128859975 - Charlie1a DNA MER1_type -912 543 426 438 157 10 59 chr12 15422519 15422586 -128859903 - Charlie1a DNA MER1_type -2524 237 175 4796 80 23 42 chr12 15422586 15422724 -128859765 - LTR30 LTR ERV1 0 722 583 2489 54 0 10 chr12 15422724 15423038 -128859451 + AluY SINE Alu 1 311 0 4796 80 23 42 chr12 15423038 15423635 -128858854 - LTR30 LTR ERV1 -139 583 1 438 157 10 59 chr12 15423635 15423669 -128858820 - Charlie1a DNA MER1_type -2586 175 141 1625 132 16 76 chr12 15423669 15424034 -128858455 - MER4A LTR ERV1 0 664 263 517 111 89 0 chr12 15424034 15424124 -128858365 - MER4A LTR ERV1 -566 98 1 452 252 54 34 chr12 15424124 15424260 -128858229 - Charlie1a DNA MER1_type -1315 140 2 501 281 278 7 chr12 15424344 15424646 -128857843 + L2 LINE L2 2930 3313 0 678 257 47 100 chr12 15424990 15425716 -128856773 - L1M4 LINE L1 -1571 4575 3923 2015 134 0 17 chr12 15425716 15426015 -128856474 - AluSx SINE Alu -14 298 5 678 257 47 100 chr12 15426015 15426365 -128856124 - L1M4 LINE L1 -2223 3923 3556 438 256 98 42 chr12 15426371 15426586 -128855903 + L1M4 LINE L1 5079 5305 -841 353 253 23 75 chr12 15426747 15426791 -128855698 - L1MC/D LINE L1 -2262 5940 5895 1722 166 48 20 chr12 15426791 15427086 -128855403 - AluJo SINE Alu -9 303 1 353 253 23 75 chr12 15427086 15427215 -128855274 - L1MC/D LINE L1 -2307 5895 5776 28 0 0 0 chr12 15427244 15427272 -128855217 + AT_rich Low_complexity Low_complexity 1 28 0 542 296 66 0 chr12 15427322 15427623 -128854866 - L1MEc LINE L1 -4823 1573 1253 701 209 44 18 chr12 15427656 15427670 -128854819 - L1MC/D LINE L1 -1438 5102 5090 1461 152 11 19 chr12 15427670 15427933 -128854556 - L1PA16 LINE L1 -4 6162 5902 701 209 44 18 chr12 15427933 15428143 -128854346 - L1MC/D LINE L1 -1450 5090 4872 * 5003 132 25 65 chr12 15428139 15428681 -128853808 - L1MA6 LINE L1 -5 6295 5733 1997 141 0 46 chr12 15428681 15428987 -128853502 + AluSx SINE Alu 1 292 -20 5003 132 25 65 chr12 15428987 15429102 -128853387 - L1MA6 LINE L1 -567 5733 5615 2849 13 0 0 chr12 15429102 15429411 -128853078 - AluYa5 SINE Alu -2 309 1 5003 132 25 65 chr12 15429411 15430050 -128852439 - L1MA6 LINE L1 -685 5615 4952 528 59 0 0 chr12 15430050 15430118 -128852371 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 2019 127 36 0 chr12 15430119 15430395 -128852094 - AluSx SINE Alu -26 286 1 5003 132 25 65 chr12 15430395 15430444 -128852045 - L1MA6 LINE L1 -1348 4952 4903 698 164 15 67 chr12 15430444 15430578 -128851911 - FLAM_A SINE Alu -6 127 1 5003 132 25 65 chr12 15430578 15430947 -128851542 - L1MA6 LINE L1 -1397 4903 4644 940 254 48 7 chr12 15430955 15431246 -128851243 - L1M1 LINE L1 -5365 2200 1898 762 306 47 69 chr12 15431809 15432231 -128850258 - L1M1 LINE L1 -5532 1954 1542 2286 127 50 27 chr12 15432240 15432680 -128849809 - LTR7 LTR ERV1 0 450 1 5049 227 45 73 chr12 15432688 15434112 -128848377 - L1MC/D LINE L1 -1662 4878 3537 1797 188 0 7 chr12 15434112 15434421 -128848068 - AluJo SINE Alu -5 307 1 5049 227 45 73 chr12 15434421 15435228 -128847261 - L1MC/D LINE L1 -3003 3537 2709 2179 102 0 3 chr12 15435726 15436047 -128846442 - AluSg SINE Alu 0 320 1 2168 103 10 0 chr12 15436115 15436406 -128846083 - AluSg SINE Alu -16 294 1 24 0 0 0 chr12 15436509 15436533 -128845956 + AT_rich Low_complexity Low_complexity 1 24 0 1659 151 78 9 chr12 15436614 15436958 -128845531 - L1MA7 LINE L1 -28 6263 5896 * 9276 205 54 35 chr12 15436955 15438362 -128844127 - L1MDa LINE L1 -3829 2711 1231 1925 150 10 0 chr12 15438362 15438676 -128843813 - L1MC1 LINE L1 0 6333 6017 9276 205 54 35 chr12 15438676 15439918 -128842571 - L1MDa LINE L1 -5309 1231 14 1907 133 7 0 chr12 15440721 15441000 -128841489 - AluSx SINE Alu -8 304 24 396 0 0 0 chr12 15441344 15441388 -128841101 + (TG)n Simple_repeat Simple_repeat 2 45 0 263 351 54 27 chr12 15441792 15441903 -128840586 - MER5A DNA MER1_type -68 121 8 2911 275 147 31 chr12 15441907 15443214 -128839275 + L2 LINE L2 1460 2917 -397 1583 193 3 69 chr12 15443215 15443604 -128838885 + MLT1A2 LTR MaLR 1 363 -11 634 305 81 38 chr12 15443617 15443774 -128838715 + L2 LINE L2 2917 3066 -247 2266 105 3 0 chr12 15443774 15444070 -128838419 + AluSq SINE Alu 2 298 -15 634 305 81 38 chr12 15444070 15444143 -128838346 + L2 LINE L2 3066 3134 -179 297 75 0 0 chr12 15444143 15444183 -128838306 + (CA)n Simple_repeat Simple_repeat 1 40 0 634 305 81 38 chr12 15444183 15444295 -128838194 + L2 LINE L2 3134 3275 -38 687 68 0 19 chr12 15444343 15444446 -128838043 - L1PA8 LINE L1 0 6172 6072 348 214 0 31 chr12 15444460 15444558 -128837931 - MER31A LTR ERV1 -38 447 353 2129 87 4 51 chr12 15446360 15446840 -128835649 + MER84-int LTR ERV1 4440 4953 -1 3327 106 6 6 chr12 15446840 15447341 -128835148 + MER84 LTR ERVI 1 501 -6 2553 164 56 42 chr12 15447385 15447853 -128834636 + Charlie5 DNA MER1_type 1951 2432 -192 2115 112 7 0 chr12 15447853 15448138 -128834351 - AluSx SINE Alu -13 299 13 2553 164 56 42 chr12 15448138 15448334 -128834155 + Charlie5 DNA MER1_type 2432 2624 0 420 314 130 0 chr12 15448477 15448646 -128833843 + MIR SINE MIR 48 238 -24 861 171 18 30 chr12 15448684 15448848 -128833641 + FRAM SINE Alu 1 162 -14 320 350 36 75 chr12 15449020 15449288 -128833201 - L2 LINE L2 -943 2371 2120 1768 150 0 8 chr12 15449288 15449578 -128832911 + AluSx SINE Alu 18 305 0 320 350 36 75 chr12 15449578 15449697 -128832792 - L2 LINE L2 -1194 2120 1998 3671 85 58 7 chr12 15450574 15451126 -128831363 - LTR19B LTR ERV1 0 580 1 313 256 37 24 chr12 15451543 15451625 -128830864 + MIR3 SINE MIR 109 191 -17 771 294 82 79 chr12 15452044 15452992 -128829497 + HAL1 LINE L1 2 956 -1551 8055 75 4 12 chr12 15452992 15454072 -128828417 - MER11C LTR ERVK 0 1071 1 771 294 82 79 chr12 15454072 15454274 -128828215 + HAL1 LINE L1 956 1156 -1351 24 0 0 0 chr12 15454286 15454310 -128828179 + AT_rich Low_complexity Low_complexity 1 24 0 734 225 132 28 chr12 15454374 15454545 -128827944 + HAL1 LINE L1 1342 1494 -1013 2289 148 75 5 chr12 15454545 15454943 -128827546 + MSTB LTR MaLR 1 426 0 734 225 132 28 chr12 15454943 15455060 -128827429 + HAL1 LINE L1 1494 1660 -847 1003 246 79 27 chr12 15455159 15455602 -128826887 + HAL1 LINE L1 2037 2502 -5 2287 72 48 0 chr12 15455627 15455920 -128826569 + AluY SINE Alu 1 307 -4 228 393 7 7 chr12 15456068 15456218 -128826271 - L2 LINE L2 -1016 2298 2149 409 379 6 12 chr12 15456708 15456877 -128825612 + MIR SINE MIR 13 180 -82 2266 74 17 7 chr12 15457074 15457370 -128825119 - AluSg SINE Alu -11 299 1 288 304 65 28 chr12 15457476 15457690 -128824799 + HAL1 LINE L1 1544 1765 -742 1813 142 6 66 chr12 15457835 15458153 -128824336 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr12 15458153 15458175 -128824314 + AT_rich Low_complexity Low_complexity 1 22 0 247 267 0 0 chr12 15458240 15458315 -128824174 + T-rich Low_complexity Low_complexity 1 75 0 572 279 0 0 chr12 15458336 15458465 -128824024 - FLAM_A SINE Alu -4 129 1 2144 123 0 13 chr12 15458467 15458776 -128823713 - AluSx SINE Alu -7 305 1 225 306 41 20 chr12 15458777 15458875 -128823614 + L2 LINE L2 2698 2797 -517 354 198 12 12 chr12 15459726 15459812 -128822677 + MLT1J2 LTR MaLR 344 429 -21 2190 76 7 16 chr12 15459947 15460251 -128822238 + AluY SINE Alu 1 301 -10 2354 103 0 0 chr12 15460260 15460571 -128821918 + AluSx SINE Alu 1 311 -1 2310 116 0 3 chr12 15461359 15461669 -128820820 - AluSx SINE Alu -3 309 1 185 111 28 0 chr12 15461742 15461778 -128820711 - L2 LINE L2 -2 3311 3275 439 270 132 21 chr12 15461905 15462194 -128820295 + L1ME4a LINE L1 5563 5883 -238 2104 112 20 3 chr12 15462695 15463000 -128819489 + AluSg SINE Alu 1 310 0 359 133 0 0 chr12 15463316 15463376 -128819113 - L1MA4 LINE L1 -8 6292 6233 528 160 0 0 chr12 15463476 15463570 -128818919 - L1MA4 LINE L1 -70 6230 6137 313 312 69 53 chr12 15464127 15464316 -128818173 + HAL1b LINE L1 586 777 -571 473 322 25 29 chr12 15464716 15464961 -128817528 - MLT1J LTR MaLR -29 482 239 1937 152 3 7 chr12 15465171 15465474 -128817015 + AluJb SINE Alu 6 307 -5 524 105 0 53 chr12 15465942 15466008 -128816481 - MSTC LTR MaLR 0 428 367 2281 114 0 16 chr12 15466008 15466323 -128816166 - AluSq SINE Alu -3 310 1 524 105 0 53 chr12 15466323 15466351 -128816138 - MSTC LTR MaLR -61 367 339 312 120 0 0 chr12 15466353 15466403 -128816086 - MSTC LTR MaLR -378 50 1 2143 125 0 0 chr12 15466621 15466917 -128815572 + AluSg1 SINE Alu 1 296 -13 2062 144 30 25 chr12 15467038 15467400 -128815089 + THE1B LTR MaLR 1 364 0 10485 104 22 29 chr12 15467401 15468991 -128813498 + THE1B-int LTR MaLR 2 1580 0 2279 122 37 8 chr12 15468991 15469345 -128813144 + THE1B LTR MaLR 1 364 0 387 312 95 5 chr12 15469879 15470068 -128812421 - MIR SINE MIR -48 214 9 250 268 37 12 chr12 15470229 15470311 -128812178 + L2 LINE L2 3191 3274 -39 366 291 147 50 chr12 15470953 15471239 -128811250 + L1M4 LINE L1 2734 2991 -3155 1860 126 43 7 chr12 15471239 15471516 -128810973 - AluJb SINE Alu -25 287 1 366 291 147 50 chr12 15471516 15471747 -128810742 + L1M4 LINE L1 2991 3301 -2845 2084 102 27 0 chr12 15471750 15472044 -128810445 + AluSq SINE Alu 1 302 -11 869 142 0 8 chr12 15472387 15472521 -128809968 - FLAM_C SINE Alu 0 133 1 3965 125 15 21 chr12 15472686 15473156 -128809333 + L1PA16 LINE L1 5513 5979 -187 4780 45 9 0 chr12 15473156 15473739 -128808750 + LTR10C LTR ERV1 4 591 0 3965 125 15 21 chr12 15473739 15473926 -128808563 + L1PA16 LINE L1 5979 6166 0 313 278 61 0 chr12 15474065 15474180 -128808309 + L1MEd LINE L1 604 725 -5394 865 218 161 59 chr12 15474267 15474592 -128807897 - L1ME LINE L1 -383 5787 5404 1757 132 52 14 chr12 15474592 15474879 -128807610 - AluSx SINE Alu -14 298 1 865 218 161 59 chr12 15474879 15474993 -128807496 - L1ME LINE L1 -766 5404 5303 650 161 23 8 chr12 15475486 15475616 -128806873 - AluJo SINE Alu -176 136 5 1948 106 36 30 chr12 15476536 15476838 -128805651 + AluSx SINE Alu 1 304 -8 200 143 48 0 chr12 15479019 15479061 -128803428 + C-rich Low_complexity Low_complexity 5 48 0 2621 27 0 3 chr12 15479804 15480104 -128802385 + AluY SINE Alu 1 299 -12 321 269 64 0 chr12 15480421 15480499 -128801990 - MIR SINE MIR -148 114 32 184 368 0 0 chr12 15480530 15480587 -128801902 - L2 LINE L2 -15 3298 3242 332 302 21 10 chr12 15483572 15483668 -128798821 - L2 LINE L2 -19 3253 3157 183 42 0 0 chr12 15484675 15484699 -128797790 + (CA)n Simple_repeat Simple_repeat 2 25 0 585 273 120 10 chr12 15484954 15485163 -128797326 + MIR SINE MIR 31 262 0 215 324 99 55 chr12 15485735 15485988 -128796501 - L2 LINE L2 -1020 2294 2031 22 35 0 0 chr12 15486304 15486333 -128796156 + AT_rich Low_complexity Low_complexity 1 29 0 2114 125 3 19 chr12 15486672 15486985 -128795504 - AluJb SINE Alu 0 312 5 2199 164 173 4 chr12 15487913 15488438 -128794051 - MER90 LTR ERV1 0 614 1 469 286 75 6 chr12 15488807 15488968 -128793521 - LTR33 LTR ERVL -326 195 24 287 141 0 26 chr12 15489700 15489822 -128792667 + LTR41 LTR ERVL 1 172 -601 462 148 62 0 chr12 15489883 15489964 -128792525 + MER58B DNA MER1_type 256 341 0 359 267 139 10 chr12 15491256 15491357 -128791132 + L2 LINE L2 3158 3271 -1 1381 158 57 0 chr12 15492391 15492619 -128789870 + AluJo SINE Alu 42 282 -30 2289 91 3 10 chr12 15495304 15495600 -128786889 + AluSq SINE Alu 1 294 -19 293 212 15 0 chr12 15495761 15495827 -128786662 - HsTC2 DNA Tc2 -4 1894 1828 2277 102 0 3 chr12 15496652 15496945 -128785544 + AluY SINE Alu 1 292 -19 456 333 81 10 chr12 15498273 15498471 -128784018 + MIR SINE MIR 3 214 -48 2904 119 15 7 chr12 15499036 15499491 -128782998 + L1PB2 LINE L1 5691 6149 -2 422 222 93 9 chr12 15499726 15499834 -128782655 + L2 LINE L2 3193 3309 -4 2352 103 10 0 chr12 15499901 15500211 -128782278 + AluSq SINE Alu 1 313 0 2199 132 0 0 chr12 15502799 15503109 -128779380 + AluSg SINE Alu 1 310 0 226 216 252 36 chr12 15503130 15503269 -128779220 + MIR SINE MIR 1 169 -93 679 233 47 57 chr12 15503358 15503658 -128778831 - L1ME2 LINE L1 -144 6020 5724 275 271 0 0 chr12 15503660 15503745 -128778744 - L1ME2 LINE L1 -501 5663 5579 1349 133 167 31 chr12 15503796 15504113 -128778376 + MER46B DNA MER2_type 2 236 0 241 380 73 0 chr12 15504687 15504824 -128777665 + MIR SINE MIR 84 230 -32 320 309 37 53 chr12 15504962 15505150 -128777339 + MLT1K LTR MaLR 163 347 -241 596 250 91 43 chr12 15505577 15505785 -128776704 + MIR SINE MIR 42 259 -3 24 32 0 0 chr12 15507455 15507486 -128775003 + AT_rich Low_complexity Low_complexity 1 31 0 200 170 38 0 chr12 15507666 15507719 -128774770 + (TA)n Simple_repeat Simple_repeat 1 55 0 462 246 90 0 chr12 15508204 15508326 -128774163 - MER20 DNA MER1_type -38 181 49 208 296 91 0 chr12 15509840 15509928 -128772561 + MIR SINE MIR 111 206 -56 2080 110 3 10 chr12 15514190 15514481 -128768008 - AluSx SINE Alu -23 289 1 2227 109 3 0 chr12 15515233 15515527 -128766962 + AluSx SINE Alu 1 295 -17 248 319 36 87 chr12 15517750 15517888 -128764601 - L2 LINE L2 0 3272 3142 313 282 45 0 chr12 15518475 15518585 -128763904 + Tigger8 DNA MER2_type 132 246 -420 232 353 32 5 chr12 15518895 15519082 -128763407 + Tigger8 DNA MER2_type 388 579 -87 2483 51 0 0 chr12 15519512 15519807 -128762682 + AluY SINE Alu 1 295 -16 231 232 23 90 chr12 15519872 15520049 -128762440 - L1ME LINE L1 -403 6112 5948 635 176 17 0 chr12 15520103 15520222 -128762267 - L1PA16 LINE L1 -6 6160 6040 730 196 35 30 chr12 15520301 15520531 -128761958 + L1MC5 LINE L1 7701 7931 -30 425 320 143 26 chr12 15522201 15522432 -128760057 + MIR SINE MIR 2 259 -3 224 355 79 32 chr12 15522735 15522924 -128759565 - L2 LINE L2 -352 2962 2765 248 345 78 39 chr12 15523847 15524079 -128758410 + L2 LINE L2 1744 1984 -1330 2067 104 11 4 chr12 15524089 15524369 -128758120 - AluSx SINE Alu -7 305 24 4501 223 119 61 chr12 15524423 15524701 -128757788 - L1ME LINE L1 -1003 5537 5276 6417 70 42 6 chr12 15524701 15525787 -128756702 - L1PA8A LINE L1 -3 6128 5035 4501 223 119 61 chr12 15525787 15525848 -128756641 - L1ME LINE L1 -1264 5276 5220 2024 126 3 17 chr12 15525848 15526150 -128756339 + AluSc SINE Alu 1 298 -11 4501 223 119 61 chr12 15526150 15528025 -128754464 - L1ME LINE L1 -1320 5220 3194 1190 220 25 22 chr12 15528052 15528411 -128754078 - L1M4 LINE L1 -1523 4623 4264 370 149 36 113 chr12 15528417 15528585 -128753904 - L1ME LINE L1 -3993 2547 2393 664 244 93 9 chr12 15528596 15528821 -128753668 - MLT1C LTR MaLR 0 467 224 419 266 37 37 chr12 15528843 15529057 -128753432 - L1ME LINE L1 -4179 2361 2148 219 156 0 22 chr12 15529342 15529387 -128753102 + G-rich Low_complexity Low_complexity 3 46 0 267 31 0 0 chr12 15529663 15529695 -128752794 + (CAA)n Simple_repeat Simple_repeat 2 33 0 344 376 5 5 chr12 15529715 15529904 -128752585 - L1ME LINE L1 -6330 210 22 22 35 0 0 chr12 15530081 15530110 -128752379 + AT_rich Low_complexity Low_complexity 1 29 0 282 56 0 0 chr12 15532158 15532194 -128750295 + (CA)n Simple_repeat Simple_repeat 1 36 0 567 238 105 41 chr12 15533748 15533920 -128748569 - MER5A DNA MER1_type 0 189 7 191 248 171 26 chr12 15534440 15534557 -128747932 + L2 LINE L2 3167 3300 -13 2276 99 0 7 chr12 15534747 15535050 -128747439 - AluSg SINE Alu -8 302 2 809 308 47 37 chr12 15536035 15536525 -128745964 - MLT1K LTR MaLR -36 552 58 33 25 0 0 chr12 15536663 15536703 -128745786 + AT_rich Low_complexity Low_complexity 1 40 0 316 290 21 11 chr12 15536961 15537054 -128745435 - MIR3 SINE MIR -49 159 66 300 253 0 0 chr12 15537065 15537140 -128745349 + (CAT)n Simple_repeat Simple_repeat 1 75 0 704 325 29 0 chr12 15537141 15537384 -128745105 - MIR SINE MIR -1 261 12 324 0 0 0 chr12 15537469 15537505 -128744984 + (TG)n Simple_repeat Simple_repeat 2 37 0 378 0 0 0 chr12 15537886 15537928 -128744561 + (TG)n Simple_repeat Simple_repeat 2 43 0 480 35 0 0 chr12 15537991 15538049 -128744440 + (TA)n Simple_repeat Simple_repeat 1 58 0 241 170 0 19 chr12 15538055 15538108 -128744381 - AluSc SINE Alu -2 297 246 277 231 90 13 chr12 15538366 15538444 -128744045 - MIR SINE MIR -148 114 31 2945 260 119 12 chr12 15538465 15538621 -128743868 + L2 LINE L2 1918 2056 -1257 1823 154 34 14 chr12 15538621 15538914 -128743575 - AluJb SINE Alu -13 299 1 2945 260 119 12 chr12 15538914 15540032 -128742457 + L2 LINE L2 2056 3313 0 375 309 9 29 chr12 15540437 15540647 -128741842 - MER112 DNA MER1_type -6 254 49 391 343 35 20 chr12 15540758 15540929 -128741560 + MIR SINE MIR 40 212 -50 417 245 177 7 chr12 15541409 15541556 -128740933 - MIR SINE MIR -82 180 9 22 0 0 0 chr12 15541711 15541733 -128740756 + AT_rich Low_complexity Low_complexity 1 22 0 301 262 12 12 chr12 15541754 15541838 -128740651 - MIR SINE MIR -18 244 161 204 67 0 0 chr12 15542888 15542918 -128739571 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2218 92 10 0 chr12 15542960 15543252 -128739237 - AluSg SINE Alu -15 295 1 437 188 0 118 chr12 15543313 15543457 -128739032 - Tigger7 DNA MER2_type 0 2487 2361 * 2558 147 123 4 chr12 15543452 15543941 -128738548 - Tigger7 DNA MER2_type -1940 547 1 1187 165 74 0 chr12 15544238 15544468 -128738021 - Tigger7 DNA MER2_type -309 424 178 225 157 39 20 chr12 15544748 15544799 -128737690 - L2 LINE L2 0 3272 3221 368 313 123 33 chr12 15544804 15544858 -128737631 - MIR SINE MIR 0 262 214 2062 150 0 3 chr12 15544858 15545164 -128737325 - AluSx SINE Alu -7 305 1 368 313 123 33 chr12 15545164 15545320 -128737169 - MIR SINE MIR -48 214 33 181 317 37 99 chr12 15546065 15546226 -128736263 - L2 LINE L2 -674 2640 2490 1562 220 30 28 chr12 15546714 15547109 -128735380 - MSTD LTR MaLR 0 396 1 180 111 0 0 chr12 15549813 15549840 -128732649 + (CAAGC)n Simple_repeat Simple_repeat 2 28 0 267 274 139 36 chr12 15551544 15551847 -128730642 - L1ME4a LINE L1 -4 6117 5784 808 262 86 13 chr12 15551906 15552139 -128730350 + MIR SINE MIR 13 262 0 209 345 44 53 chr12 15552384 15552497 -128729992 + MIR SINE MIR 21 132 -76 188 289 99 33 chr12 15552550 15552671 -128729818 - MIR SINE MIR -37 225 97 651 188 0 18 chr12 15552907 15553077 -128729412 + GA-rich Low_complexity Low_complexity 2 168 0 335 320 47 13 chr12 15553356 15553506 -128728983 + MIR SINE MIR 37 191 -71 1827 216 121 2 chr12 15553983 15554530 -128727959 - L1MC4 LINE L1 0 8042 7431 192 77 0 0 chr12 15554819 15554845 -128727644 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 230 278 120 37 chr12 15555105 15555213 -128727276 - L2 LINE L2 -1 3312 3196 1194 278 116 65 chr12 15557008 15557735 -128724754 - L3 LINE CR1 -310 1267 504 232 182 0 0 chr12 15557882 15557926 -128724563 + Charlie8 DNA MER1_type 1377 1420 -997 1636 269 5 5 chr12 15557943 15558375 -128724114 + L1MCc LINE L1 25 456 -5967 2006 234 76 48 chr12 15558426 15559084 -128723405 + L1MCc LINE L1 669 1354 -5069 1876 183 3 3 chr12 15559084 15559384 -128723105 + AluJo SINE Alu 1 300 -12 2006 234 76 48 chr12 15559384 15559501 -128722988 + L1MCc LINE L1 1354 1466 -4957 196 182 0 0 chr12 15559508 15559541 -128722948 - L3 LINE CR1 -1114 463 431 300 178 0 0 chr12 15559757 15559830 -128722659 + C-rich Low_complexity Low_complexity 2 74 0 1812 172 14 3 chr12 15559830 15560120 -128722369 - AluJo SINE Alu -19 293 1 236 273 34 23 chr12 15560212 15560300 -128722189 - MIR SINE MIR -6 256 168 565 319 56 14 chr12 15560773 15561018 -128721471 + MIR SINE MIR 14 262 0 870 206 75 9 chr12 15561377 15561605 -128720884 - AluJo SINE Alu -4 308 66 315 215 13 142 chr12 15562964 15563063 -128719426 - MIR SINE MIR -62 146 117 1996 132 24 0 chr12 15563063 15563359 -128719130 - AluJb SINE Alu -9 303 1 315 215 13 142 chr12 15563359 15563427 -128719062 - MIR SINE MIR -91 117 42 17378 151 27 17 chr12 15563462 15564087 -128718402 - L1PA11 LINE L1 0 6454 5837 1864 129 86 0 chr12 15564087 15564365 -128718124 - AluSx SINE Alu -10 302 1 17378 151 27 17 chr12 15564365 15567507 -128714982 - L1PA11 LINE L1 -617 5837 2201 2066 145 0 37 chr12 15567507 15567831 -128714658 - AluSx SINE Alu 0 312 1 17378 151 27 17 chr12 15567831 15568387 -128714102 - L1PA11 LINE L1 -4253 2201 1652 36269 85 10 10 chr12 15568390 15568735 -128713754 - L1PA6 LINE L1 0 6154 5811 2384 93 0 0 chr12 15568735 15569036 -128713453 - AluY SINE Alu -10 301 1 36269 85 10 10 chr12 15569036 15574828 -128707661 - L1PA6 LINE L1 -343 5811 11 5470 231 41 20 chr12 15574838 15577549 -128704940 - L1PA12 LINE L1 -4288 3296 1 505 330 124 35 chr12 15578125 15578586 -128703903 - L3 LINE CR1 -5 1572 1071 22 35 0 0 chr12 15579541 15579570 -128702919 + AT_rich Low_complexity Low_complexity 1 29 0 921 213 76 105 chr12 15580732 15581140 -128701349 + MER57A LTR ERV1 3 398 -5 685 341 148 14 chr12 15581724 15582231 -128700258 + L3 LINE CR1 618 1192 -385 188 211 0 0 chr12 15582419 15582457 -128700032 + L2 LINE L2 3269 3306 -7 450 0 0 0 chr12 15582687 15582737 -128699752 + (TA)n Simple_repeat Simple_repeat 2 51 0 355 336 0 35 chr12 15583839 15583982 -128698507 - LTR16A LTR ERVL -220 230 93 228 35 0 0 chr12 15585440 15585469 -128697020 + (CTA)n Simple_repeat Simple_repeat 1 29 0 1021 257 20 4 chr12 15585806 15586055 -128696434 - MIR SINE MIR -3 259 7 313 274 17 68 chr12 15586455 15586572 -128695917 + MIR3 SINE MIR 87 197 -11 505 299 81 15 chr12 15586668 15586865 -128695624 - LTR16A LTR ERVL 0 450 241 2506 256 152 53 chr12 15586937 15588538 -128693951 + L1MEc LINE L1 73 1831 -4565 358 209 79 3 chr12 15588542 15588651 -128693838 - AluJ/FRAM SINE Alu 0 302 223 326 258 50 58 chr12 15588652 15588772 -128693717 + L1MEc LINE L1 1819 1937 -4459 325 179 52 67 chr12 15588782 15588916 -128693573 - L1MEc LINE L1 -4111 2285 2154 1588 126 170 0 chr12 15589766 15590013 -128692476 + AluSx SINE Alu 1 289 -23 2269 118 0 9 chr12 15590866 15591181 -128691308 + AluSx SINE Alu 1 312 0 203 243 0 0 chr12 15592978 15593015 -128689474 + polypurine Low_complexity Low_complexity 6 42 0 203 254 0 56 chr12 15594009 15594080 -128688409 - L2 LINE L2 -20 3252 3186 200 303 0 15 chr12 15595678 15595744 -128686745 + A-rich Low_complexity Low_complexity 3 67 0 276 102 0 0 chr12 15596334 15596383 -128686106 + (TCCA)n Simple_repeat Simple_repeat 3 51 0 356 245 102 0 chr12 15596388 15596486 -128686003 - L2 LINE L2 0 3313 3206 628 357 34 4 chr12 15597609 15597844 -128684645 - MIR SINE MIR -12 250 9 202 293 20 91 chr12 15599496 15599536 -128682953 + MIR SINE MIR 34 75 -133 2185 124 0 16 chr12 15599536 15599851 -128682638 - AluSx SINE Alu -2 310 1 202 293 20 91 chr12 15599851 15599909 -128682580 + MIR SINE MIR 75 125 -83 190 333 16 16 chr12 15600251 15600314 -128682175 + MIR SINE MIR 57 119 -89 510 250 13 26 chr12 15601589 15601745 -128680744 + MIR SINE MIR 109 262 0 256 329 89 0 chr12 15601767 15601913 -128680576 + MIR SINE MIR 98 256 -6 2132 108 18 0 chr12 15602194 15602509 -128679980 - AluSx SINE Alu 0 320 1 305 313 40 40 chr12 15602821 15602920 -128679569 + L2 LINE L2 3149 3247 -25 32 43 0 0 chr12 15604805 15604851 -128677638 + AT_rich Low_complexity Low_complexity 1 46 0 316 313 53 40 chr12 15604963 15605113 -128677376 + L2 LINE L2 3158 3309 -4 329 303 9 9 chr12 15605473 15605582 -128676907 - L1MEc LINE L1 -2457 3758 3650 28 0 0 0 chr12 15605590 15605618 -128676871 + AT_rich Low_complexity Low_complexity 1 28 0 871 331 68 35 chr12 15605619 15606256 -128676233 - L1MEc LINE L1 -3241 2974 2317 844 225 0 28 chr12 15606492 15606674 -128675815 - FRAM SINE Alu -7 169 1 391 343 34 59 chr12 15606888 15607127 -128675362 - L1MEc LINE L1 -861 1715 1509 418 351 124 53 chr12 15607347 15608214 -128674275 - L2 LINE L2 -77 3195 2225 213 94 0 0 chr12 15608501 15608533 -128673956 + L2 LINE L2 3271 3302 -11 230 314 19 0 chr12 15610146 15610251 -128672238 + T-rich Low_complexity Low_complexity 1 107 0 306 0 0 0 chr12 15610417 15610451 -128672038 + (CA)n Simple_repeat Simple_repeat 2 35 0 594 279 119 9 chr12 15611081 15611300 -128671189 - MIR SINE MIR -17 245 3 3833 119 94 20 chr12 15611541 15612255 -128670234 + LTR1 LTR ERV1 18 784 -1 2332 104 0 0 chr12 15613222 15613520 -128668969 - AluSg SINE Alu -12 298 1 1126 141 23 23 chr12 15613779 15613956 -128668533 + FRAM SINE Alu 1 176 0 180 320 53 27 chr12 15614001 15614076 -128668413 - MIR SINE MIR -96 112 36 1331 188 5 0 chr12 15616404 15616622 -128665867 - AluJb SINE Alu -93 219 1 189 184 0 0 chr12 15616652 15616690 -128665799 + L2 LINE L2 3276 3313 0 761 285 71 45 chr12 15616914 15617338 -128665151 + LTR16A LTR ERVL 16 450 0 22 35 0 0 chr12 15617343 15617372 -128665117 + AT_rich Low_complexity Low_complexity 1 29 0 2498 184 19 35 chr12 15618502 15619041 -128663448 + MER74A LTR ERVL 26 555 -3 1921 101 0 104 chr12 15619625 15619952 -128662537 - AluSg SINE Alu -13 297 5 24 0 0 0 chr12 15620154 15620178 -128662311 + AT_rich Low_complexity Low_complexity 1 24 0 399 157 0 0 chr12 15621908 15621978 -128660511 + (TG)n Simple_repeat Simple_repeat 1 70 0 21 36 0 0 chr12 15622425 15622453 -128660036 + AT_rich Low_complexity Low_complexity 1 28 0 1639 134 24 3 chr12 15622462 15622754 -128659735 - L1MA5 LINE L1 -1 6299 6002 2253 125 14 3 chr12 15623180 15623532 -128658957 + L1PA14 LINE L1 5805 6160 -1 590 255 194 5 chr12 15623642 15623858 -128658631 + MIR SINE MIR 3 259 -3 350 363 19 32 chr12 15623863 15624020 -128658469 - L3 LINE CR1 -42 1535 1381 2254 217 28 17 chr12 15624773 15625303 -128657186 + MLT1F LTR MaLR 7 542 0 654 241 203 5 chr12 15625408 15625615 -128656874 - MIR SINE MIR -13 249 2 279 300 0 0 chr12 15627073 15627143 -128655346 + MIR SINE MIR 74 143 -119 215 319 50 71 chr12 15627185 15627326 -128655163 + MIR SINE MIR 54 191 -71 330 345 17 0 chr12 15627660 15627779 -128654710 + MER5C DNA MER1_type 4 124 -200 970 181 0 6 chr12 15627861 15628021 -128654468 - AluJo SINE Alu -153 159 1 364 353 111 27 chr12 15628441 15628936 -128653553 - L2 LINE L2 -1 3271 2739 1563 233 92 68 chr12 15628970 15630115 -128652374 - L1ME3A LINE L1 -15 6224 5049 2177 94 23 17 chr12 15630143 15630442 -128652047 + AluSx SINE Alu 1 301 -11 856 236 81 32 chr12 15630509 15630755 -128651734 + MLT2B1 LTR ERVL 229 486 -34 496 52 13 13 chr12 15630822 15630899 -128651590 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 4629 132 17 36 chr12 15631090 15631953 -128650536 - L1MA6 LINE L1 -26 6274 5428 3760 92 6 0 chr12 15632035 15632577 -128649912 + MER41A LTR ERV1 1 545 -9 469 226 60 5 chr12 15632770 15632969 -128649520 - L1ME3A LINE L1 -3132 3083 2874 800 279 117 30 chr12 15632991 15633137 -128649352 - L1MEc LINE L1 -3444 2771 2639 2151 109 0 7 chr12 15633137 15633431 -128649058 + AluSc SINE Alu 1 292 -17 800 279 117 30 chr12 15633431 15634574 -128647915 - L1MEc LINE L1 -3576 2639 1429 315 164 0 0 chr12 15634637 15634698 -128647791 + (TG)n Simple_repeat Simple_repeat 2 62 0 372 103 0 0 chr12 15635094 15635152 -128647337 + (CA)n Simple_repeat Simple_repeat 1 58 0 193 279 0 0 chr12 15635843 15635886 -128646603 - L2 LINE L2 0 3272 3230 25 31 0 0 chr12 15637283 15637315 -128645174 + AT_rich Low_complexity Low_complexity 1 32 0 1301 101 5 0 chr12 15637322 15637560 -128644929 + L1PA8 LINE L1 5950 6188 0 414 246 94 49 chr12 15638392 15638595 -128643894 + MIR SINE MIR 2 213 -49 275 372 67 74 chr12 15639442 15640180 -128642309 - L2 LINE L2 -14 3258 2511 196 331 205 8 chr12 15640228 15640355 -128642134 - L2 LINE L2 -925 2389 2238 296 64 21 0 chr12 15640423 15640470 -128642019 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 408 220 99 0 chr12 15640472 15640563 -128641926 - L2 LINE L2 -12 3301 3202 475 360 92 10 chr12 15640648 15640951 -128641538 - L2 LINE L2 -1258 2056 1729 291 358 58 47 chr12 15641159 15641522 -128640967 + L2 LINE L2 2540 2906 -408 566 318 23 17 chr12 15641851 15642024 -128640465 - MIR3 SINE MIR -15 193 20 1077 224 32 44 chr12 15642842 15643079 -128639410 + MER87 LTR ERV1 168 401 -140 1657 181 31 10 chr12 15643079 15643371 -128639118 - AluSx SINE Alu -14 298 1 1077 224 32 44 chr12 15643371 15643472 -128639017 + MER87 LTR ERV1 401 502 -39 1944 138 58 19 chr12 15643897 15644258 -128638231 + THE1C LTR MaLR 1 375 0 222 304 138 36 chr12 15646095 15646342 -128636147 - L2 LINE L2 -38 3275 3004 2594 62 0 0 chr12 15646402 15646710 -128635779 + AluY SINE Alu 1 308 -3 347 329 12 42 chr12 15646761 15646928 -128635561 - L2 LINE L2 -444 2870 2709 5129 196 18 10 chr12 15647035 15648474 -128634015 + L1PA16 LINE L1 4125 5577 -589 2961 161 69 12 chr12 15648586 15649150 -128633339 + L1PA16 LINE L1 5567 6162 -4 2317 98 3 0 chr12 15650222 15650517 -128631972 - AluSp SINE Alu -17 296 1 21 57 0 0 chr12 15650527 15650562 -128631927 + AT_rich Low_complexity Low_complexity 1 35 0 314 343 22 15 chr12 15650564 15650698 -128631791 - MER5A DNA MER1_type -37 152 18 210 238 303 41 chr12 15650808 15650930 -128631559 + MIR3 SINE MIR 44 197 -11 201 283 19 0 chr12 15654272 15654325 -128628164 + L2 LINE L2 3255 3308 -5 746 196 111 54 chr12 15655392 15655450 -128627039 + MER69 DNA AcHobo 1927 1980 -546 333 0 0 0 chr12 15655450 15655487 -128627002 + (CA)n Simple_repeat Simple_repeat 1 37 0 746 196 111 54 chr12 15655487 15655937 -128626552 + MER69 DNA AcHobo 1980 2524 -2 195 163 61 82 chr12 15657464 15657513 -128624976 - L2 LINE L2 -16 3256 3209 288 241 181 17 chr12 15659139 15659255 -128623234 - MIR3 SINE MIR -6 202 68 183 129 0 0 chr12 15659627 15659658 -128622831 + (A)n Simple_repeat Simple_repeat 1 31 0 229 321 0 45 chr12 15660317 15660451 -128622038 + MIR SINE MIR 19 146 -62 620 124 9 0 chr12 15661168 15661273 -128621216 + (TC)n Simple_repeat Simple_repeat 2 107 0 417 59 0 0 chr12 15661273 15661324 -128621165 + (TTCC)n Simple_repeat Simple_repeat 1 51 0 1681 175 3 3 chr12 15661324 15661609 -128620880 - AluSx SINE Alu -8 304 20 235 295 33 41 chr12 15661884 15662006 -128620483 + MIR3 SINE MIR 48 168 -40 539 225 33 13 chr12 15662153 15662304 -128620185 + L1MA9 LINE L1 6121 6274 -38 25 0 0 0 chr12 15662323 15662348 -128620141 + AT_rich Low_complexity Low_complexity 1 25 0 209 33 33 0 chr12 15662375 15662405 -128620084 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 364 257 88 68 chr12 15662471 15662619 -128619870 - MIR SINE MIR 0 262 112 734 147 94 12 chr12 15662805 15662975 -128619514 - L1MA9 LINE L1 -38 6274 6091 453 279 158 21 chr12 15663273 15663463 -128619026 - MIR SINE MIR -45 217 2 388 254 61 48 chr12 15663563 15663728 -128618761 + MIR3 SINE MIR 12 178 -30 364 295 152 29 chr12 15664456 15664666 -128617823 + MIR SINE MIR 21 256 -6 396 106 64 0 chr12 15665172 15665266 -128617223 + GA-rich Low_complexity Low_complexity 1 100 0 582 160 10 10 chr12 15666378 15666478 -128616011 + AluJb SINE Alu 190 289 -23 1353 137 5 0 chr12 15666486 15666691 -128615798 + AluJb SINE Alu 1 206 -106 252 245 0 0 chr12 15666839 15666892 -128615597 + MIR SINE MIR 204 256 -6 2228 109 3 0 chr12 15667858 15668152 -128614337 - AluSq SINE Alu -18 295 1 364 279 44 44 chr12 15670273 15670431 -128612058 - L2 LINE L2 0 3313 3156 271 283 74 111 chr12 15670733 15671030 -128611459 - L2 LINE L2 -50 3222 2937 339 356 86 26 chr12 15671362 15671713 -128610776 - L2 LINE L2 -748 2566 2195 * 615 222 99 41 chr12 15671712 15671883 -128610606 + MER5A DNA MER1_type 9 189 0 308 366 93 12 chr12 15671953 15672199 -128610290 + L2 LINE L2 2509 2774 -540 1657 209 171 9 chr12 15672238 15672693 -128609796 + MLT1F LTR MaLR 1 529 -13 1148 302 106 17 chr12 15672708 15673172 -128609317 + L2 LINE L2 2807 3311 -2 3888 234 46 53 chr12 15673451 15673570 -128608919 - L1MD2 LINE L1 -86 6273 6155 327 25 0 0 chr12 15673570 15673610 -128608879 + (TG)n Simple_repeat Simple_repeat 2 41 0 3888 234 46 53 chr12 15673610 15673816 -128608673 - L1MD2 LINE L1 -204 6155 5949 2695 81 21 55 chr12 15673816 15674236 -128608253 + L1PA13 LINE L1 5755 6160 -3 3888 234 46 53 chr12 15674236 15675430 -128607059 - L1MD2 LINE L1 -410 5949 4781 1654 178 28 10 chr12 15675460 15675847 -128606642 - L1MD2 LINE L1 -2161 3985 3592 852 279 29 21 chr12 15676274 15676614 -128605875 - L1ME1 LINE L1 0 6166 5824 5979 191 61 29 chr12 15677199 15678203 -128604286 - ERVL-B3 LTR ERVL -4388 1376 318 886 173 0 19 chr12 15678203 15678359 -128604130 - L1PB4 LINE L1 -12 6144 5992 5979 191 61 29 chr12 15678359 15678687 -128603802 - ERVL-B3 LTR ERVL -5446 318 2 1760 207 42 68 chr12 15678688 15679257 -128603232 - MLT2B3 LTR ERVL 0 554 1 344 310 14 41 chr12 15679487 15679632 -128602857 - L2 LINE L2 0 3313 3173 255 340 41 0 chr12 15679630 15679727 -128602762 - L2 LINE L2 -621 2693 2593 * 216 290 178 28 chr12 15679957 15680064 -128602425 - MIR SINE MIR -15 247 125 862 156 95 0 chr12 15680102 15680281 -128602208 - L1 LINE L1 -1004 5142 4947 814 124 22 58 chr12 15680282 15680419 -128602070 - FLAM_C SINE Alu -11 132 1 2897 172 5 7 chr12 15680420 15680977 -128601512 - L1 LINE L1 -1191 4955 4400 * 35426 92 15 7 chr12 15680971 15687079 -128595410 - L1PA14 LINE L1 -2 6159 11 2589 188 37 25 chr12 15687089 15687878 -128594611 - L1PA13 LINE L1 -4288 3296 2488 3554 178 1 3 chr12 15687982 15688685 -128593804 - L1P LINE L1 -1330 4816 4115 3463 148 24 14 chr12 15688683 15689258 -128593231 - L1PA13 LINE L1 -6989 592 12 * 1215 188 61 0 chr12 15689261 15689538 -128592951 - L1 LINE L1 -1735 4411 4118 5485 131 25 4 chr12 15689538 15691002 -128591487 - L1PA16 LINE L1 -16 6150 4672 230 294 0 20 chr12 15691091 15691193 -128591296 + L1MC4a LINE L1 5313 5412 -2396 336 300 100 11 chr12 15691313 15691593 -128590896 + L1MC4a LINE L1 5626 5930 -1878 293 352 28 28 chr12 15692102 15692247 -128590242 - MIR3 SINE MIR -26 182 38 206 367 0 37 chr12 15693309 15693418 -128589071 - MER5A DNA MER1_type -5 184 80 825 300 71 57 chr12 15693767 15693848 -128588641 + LTR33 LTR ERVL 1 79 -442 1343 118 20 0 chr12 15693848 15694052 -128588437 - L1PA10 LINE L1 -15 6153 5946 825 300 71 57 chr12 15694052 15694476 -128588013 + LTR33 LTR ERVL 79 513 -8 2227 110 0 31 chr12 15694680 15694999 -128587490 - AluSc SINE Alu 0 309 1 403 313 94 38 chr12 15695054 15695214 -128587275 - L3 LINE CR1 -302 1275 1107 338 339 24 31 chr12 15695652 15695779 -128586710 - MIR3 SINE MIR -79 129 4 2424 66 0 3 chr12 15696299 15696600 -128585889 + AluY SINE Alu 1 300 -11 235 326 102 0 chr12 15697777 15697875 -128584614 - MIR SINE MIR -108 154 47 2851 155 67 49 chr12 15698165 15698836 -128583653 + L1MC2 LINE L1 5654 6336 -8 837 276 41 22 chr12 15698985 15699300 -128583189 - L1MDa LINE L1 -6179 361 41 311 202 154 6 chr12 15699597 15699693 -128582796 - MIR3 SINE MIR -54 154 31 460 267 161 19 chr12 15699693 15699854 -128582635 - MER5A DNA MER1_type 0 189 6 222 394 0 0 chr12 15700381 15700452 -128582037 + MIR SINE MIR 45 115 -93 192 273 61 15 chr12 15703232 15703298 -128579191 - MIR SINE MIR -64 144 76 416 158 53 26 chr12 15703447 15703561 -128578928 - MER53 DNA DNA 0 189 73 2125 246 48 40 chr12 15703851 15704810 -128577679 - L1M4 LINE L1 -1443 4703 3737 6049 199 15 6 chr12 15705214 15707357 -128575132 - L1PA15 LINE L1 -3 6162 4031 306 335 176 6 chr12 15708611 15708793 -128573696 - L2 LINE L2 -2 3270 3058 211 305 17 0 chr12 15708772 15708831 -128573658 - L2 LINE L2 -26 3287 3228 * 336 48 0 0 chr12 15709080 15709122 -128573367 + (CA)n Simple_repeat Simple_repeat 2 43 0 260 260 10 67 chr12 15709537 15709641 -128572848 - MER102b DNA MER1_type 0 341 244 467 271 91 29 chr12 15710549 15710759 -128571730 + L2 LINE L2 3091 3313 0 205 306 9 0 chr12 15711521 15711629 -128570860 + (CACCC)n Simple_repeat Simple_repeat 3 111 0 806 278 120 32 chr12 15712270 15713396 -128569093 + L1MEc LINE L1 1446 2639 -3576 2177 105 0 7 chr12 15713396 15713690 -128568799 - AluSc SINE Alu -17 292 1 806 278 120 32 chr12 15713690 15713836 -128568653 + L1MEc LINE L1 2639 2771 -3444 469 226 60 5 chr12 15713858 15714057 -128568432 + L1MEc LINE L1 2874 3083 -3132 311 117 325 0 chr12 15714164 15714241 -128568248 - MER41A-int LTR ERV1 -7654 102 1 3746 93 6 0 chr12 15714250 15714790 -128567699 - MER41A LTR ERV1 -9 545 3 1371 148 13 0 chr12 15714874 15715110 -128567379 + L1M2 LINE L1 5428 5666 -634 192 77 0 0 chr12 15715974 15716000 -128566489 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1865 212 121 2 chr12 15716289 15716836 -128565653 + L1MC4 LINE L1 7431 8042 0 314 327 47 13 chr12 15717313 15717463 -128565026 - MIR SINE MIR -71 191 37 391 343 34 59 chr12 15718500 15718739 -128563750 - L1MEc LINE L1 -861 1715 1509 418 337 164 34 chr12 15719207 15719827 -128562662 - L2 LINE L2 -389 2925 2225 213 94 0 0 chr12 15720114 15720146 -128562343 + L2 LINE L2 3271 3302 -11 212 246 22 17 chr12 15721243 15721422 -128561067 + (TA)n Simple_repeat Simple_repeat 1 180 0 2038 215 96 19 chr12 15721519 15722146 -128560343 - L1MD1 LINE L1 -2 6240 5566 1501 241 18 65 chr12 15722146 15722375 -128560114 - L1MD1 LINE L1 -894 5252 5014 1646 193 25 0 chr12 15722375 15722660 -128559829 + AluJo SINE Alu 1 292 -20 1501 241 18 65 chr12 15722660 15723095 -128559394 - L1MD1 LINE L1 -1132 5014 4619 301 290 34 80 chr12 15723687 15723863 -128558626 + L1M2 LINE L1 756 923 -5926 462 88 0 0 chr12 15723863 15723931 -128558558 + (C)n Simple_repeat Simple_repeat 1 68 0 184 255 21 21 chr12 15724602 15724649 -128557840 - MER5A DNA MER1_type -136 53 7 832 276 208 36 chr12 15725879 15726437 -128556052 + HAL1 LINE L1 814 1467 -1040 247 258 21 43 chr12 15726458 15726551 -128555938 + HAL1 LINE L1 1825 1915 -592 2567 197 19 20 chr12 15727296 15727365 -128555124 - L1MCa LINE L1 -3707 2719 2651 2066 145 0 37 chr12 15727365 15727689 -128554800 - AluSx SINE Alu 0 312 1 2567 197 19 20 chr12 15727689 15728245 -128554244 - L1MCa LINE L1 -3775 2651 1652 1507 60 0 15 chr12 15728248 15728449 -128554040 - L1PA6 LINE L1 0 6154 5957 317 284 115 113 chr12 15728765 15729287 -128553202 + L1M2 LINE L1 537 1059 -5790 2139 215 40 34 chr12 15729413 15730060 -128552429 - L1MDa LINE L1 -4477 2063 1413 868 175 0 57 chr12 15730626 15730803 -128551686 - FRAM SINE Alu -11 165 1 204 270 217 43 chr12 15731087 15731202 -128551287 + L2 LINE L2 3138 3272 0 2564 71 0 0 chr12 15731224 15731535 -128550954 + AluY SINE Alu 1 311 0 688 175 31 25 chr12 15731952 15732112 -128550377 + PABL_B LTR ERV1 507 667 0 5705 75 83 19 chr12 15732112 15733006 -128549483 + HUERS-P1 LTR ERV1 2697 3647 -2616 3012 171 12 11 chr12 15734301 15734875 -128547614 - L1MA8 LINE L1 -3 6288 5714 223 374 7 14 chr12 15736971 15737110 -128545379 + CT-rich Low_complexity Low_complexity 5 142 0 321 298 22 50 chr12 15737175 15737356 -128545133 + CT-rich Low_complexity Low_complexity 2 177 0 25 0 0 0 chr12 15738209 15738234 -128544255 + AT_rich Low_complexity Low_complexity 1 25 0 210 373 37 15 chr12 15739273 15739407 -128543082 + MIR3 SINE MIR 71 207 -1 307 383 68 41 chr12 15740054 15740349 -128542140 - L2 LINE L2 -1 3271 2969 297 75 0 0 chr12 15741626 15741666 -128540823 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 1323 96 5 0 chr12 15741666 15741864 -128540625 - L1PA8 LINE L1 -24 6148 5950 25 31 0 0 chr12 15741871 15741903 -128540586 + AT_rich Low_complexity Low_complexity 1 32 0 213 251 0 53 chr12 15742867 15742961 -128539528 + GA-rich Low_complexity Low_complexity 1 89 0 200 333 54 62 chr12 15743665 15743794 -128538695 - MIR SINE MIR -123 139 12 301 281 156 0 chr12 15743980 15744076 -128538413 + L2 LINE L2 3203 3313 0 252 130 22 0 chr12 15744348 15744394 -128538095 - MLT1K LTR MaLR -18 570 524 821 246 33 6 chr12 15744597 15744780 -128537709 + MER5A DNA MER1_type 1 188 -1 3192 101 15 4 chr12 15745666 15746131 -128536358 + L1PA11 LINE L1 5705 6174 0 23 54 0 0 chr12 15746256 15746293 -128536196 + AT_rich Low_complexity Low_complexity 1 37 0 339 264 208 0 chr12 15746305 15746430 -128536059 - MIR SINE MIR 0 262 112 287 376 32 32 chr12 15747688 15747813 -128534676 - L2 LINE L2 -15 3257 3133 515 335 23 17 chr12 15747838 15748014 -128534475 - MIR SINE MIR -27 235 59 244 311 22 74 chr12 15747986 15748121 -128534368 - MIR SINE MIR -65 143 16 * 1608 209 43 45 chr12 15748866 15749329 -128533160 - MLT1C LTR MaLR 0 467 6 203 282 184 0 chr12 15749782 15749885 -128532604 + MIR SINE MIR 67 188 -74 411 38 0 0 chr12 15751504 15751557 -128530932 + (CA)n Simple_repeat Simple_repeat 2 54 0 360 88 0 0 chr12 15751557 15751614 -128530875 + (GA)n Simple_repeat Simple_repeat 1 57 0 811 121 141 78 chr12 15752885 15753091 -128529398 - MER20 DNA MER1_type 0 219 1 195 283 167 42 chr12 15753407 15753527 -128528962 + MIR3 SINE MIR 32 166 -42 1811 136 44 0 chr12 15755225 15755542 -128526947 + L1MB2 LINE L1 5839 6169 -2 187 308 39 13 chr12 15755797 15755875 -128526614 - L2 LINE L2 0 3313 3234 567 368 147 28 chr12 15755935 15756853 -128525636 + L2 LINE L2 1947 2973 -341 5065 157 18 28 chr12 15756954 15757361 -128525128 + L1MC2 LINE L1 5314 5723 -621 1650 183 161 0 chr12 15757361 15757727 -128524762 + MSTA LTR MaLR 4 428 0 5065 157 18 28 chr12 15757727 15758350 -128524139 + L1MC2 LINE L1 5723 6334 -10 219 268 14 0 chr12 15758709 15758780 -128523709 + (TAA)n Simple_repeat Simple_repeat 2 73 0 320 224 289 46 chr12 15758781 15758933 -128523556 - MIR SINE MIR -1 261 73 1135 176 0 0 chr12 15758943 15759119 -128523370 + AluJb SINE Alu 132 307 -5 181 283 58 58 chr12 15759910 15760030 -128522459 - MIR SINE MIR -73 189 70 706 266 96 13 chr12 15760246 15760475 -128522014 - LTR16C LTR ERVL -5 486 239 245 240 22 17 chr12 15760589 15760768 -128521721 + (TA)n Simple_repeat Simple_repeat 1 180 0 2220 217 93 14 chr12 15760865 15761491 -128520998 - L1MD1 LINE L1 -2 6240 5566 * 3784 254 31 42 chr12 15761489 15761721 -128520768 - L1MD1 LINE L1 -891 5255 5022 1660 189 25 0 chr12 15761721 15762006 -128520483 + AluJo SINE Alu 1 292 -20 3784 254 31 42 chr12 15762006 15763308 -128519181 - L1MD1 LINE L1 -1124 5022 3737 15636 197 20 22 chr12 15763712 15768979 -128513510 - L1PA15 LINE L1 -3 6813 1555 3380 155 16 76 chr12 15768979 15769714 -128512775 - LTR8 LTR ERV1 0 691 1 23261 78 33 15 chr12 15769764 15773245 -128509244 - HUERS-P1 LTR ERV1 -22 6241 2697 769 287 69 60 chr12 15773245 15773883 -128508606 - PABL_B LTR ERV1 0 667 24 18333 86 20 11 chr12 15773962 15774338 -128508151 - HUERS-P1 LTR ERV1 -3564 2699 2328 203 79 26 0 chr12 15774338 15774376 -128508113 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 18333 86 20 11 chr12 15774376 15776673 -128505816 - HUERS-P1 LTR ERV1 -3935 2328 1 3216 161 20 75 chr12 15776673 15777404 -128505085 - LTR8 LTR ERV1 0 691 1 2772 273 44 26 chr12 15777404 15778480 -128504009 - L1PA15 LINE L1 -5229 1558 2 196 376 71 7 chr12 15779368 15779509 -128502980 + MIR SINE MIR 2 151 -111 387 283 0 0 chr12 15779677 15779769 -128502720 - MER5A DNA MER1_type -85 104 13 2349 86 0 13 chr12 15780253 15780556 -128501933 - AluSp SINE Alu -12 301 3 627 226 9 91 chr12 15780574 15780769 -128501720 + L1MA4 LINE L1 5995 6171 -129 1609 135 92 8 chr12 15780769 15781052 -128501437 + AluSg SINE Alu 1 305 0 627 226 9 91 chr12 15781052 15781085 -128501404 + L1MA4 LINE L1 6171 6205 -95 329 337 96 27 chr12 15782112 15782299 -128500190 - L1ME LINE L1 -367 5803 5604 274 296 56 19 chr12 15782306 15782522 -128499967 - L1ME LINE L1 -822 5324 5101 * 709 224 57 0 chr12 15782516 15782708 -128499781 + L1MA4 LINE L1 6087 6289 -11 268 327 55 21 chr12 15782739 15783054 -128499435 - L1ME LINE L1 -1077 5069 4733 435 308 100 16 chr12 15783101 15783351 -128499138 + L1M4 LINE L1 4574 4844 -1302 1192 175 68 5 chr12 15783421 15783627 -128498862 + MLT2B2 LTR ERVL 1 219 -296 1005 297 35 10 chr12 15783916 15784309 -128498180 + L1MC4 LINE L1 6500 6977 -895 975 89 0 0 chr12 15784429 15784576 -128497913 + AluSc SINE Alu 158 304 0 425 271 49 74 chr12 15784615 15784899 -128497590 + L1MC5 LINE L1 7640 7916 -45 441 153 22 44 chr12 15785745 15785882 -128496607 + CT-rich Low_complexity Low_complexity 3 136 0 288 214 107 38 chr12 15786664 15786795 -128495694 - HAL1 LINE L1 -127 2380 2241 404 216 49 0 chr12 15786871 15786973 -128495516 - HAL1 LINE L1 -398 2109 2003 519 295 54 6 chr12 15789092 15789258 -128493231 - MER5B DNA MER1_type -1 177 4 288 305 110 8 chr12 15789483 15789601 -128492888 - MIR SINE MIR -114 148 19 340 219 101 59 chr12 15789811 15789930 -128492559 + MIR SINE MIR 9 132 -130 764 256 46 25 chr12 15791558 15791796 -128490693 + MIR SINE MIR 2 244 -18 267 339 104 0 chr12 15793596 15793711 -128488778 + MIR SINE MIR 21 147 -115 3927 151 12 29 chr12 15793880 15794158 -128488331 - LTR51 LTR ERV1 -1 670 389 553 91 0 0 chr12 15794158 15794235 -128488254 - MADE1 DNA Mariner -3 77 1 3927 151 12 29 chr12 15794235 15794638 -128487851 - LTR51 LTR ERV1 -282 389 1 2318 96 3 0 chr12 15796288 15796591 -128485898 + AluSp SINE Alu 1 304 -9 2738 245 69 9 chr12 15796791 15797727 -128484762 - L1ME2 LINE L1 -10 6223 5233 280 186 127 0 chr12 15797748 15797866 -128484623 - L1ME2 LINE L1 -2906 3309 3177 452 283 46 85 chr12 15797913 15798196 -128484293 - L1ME2 LINE L1 -3329 2886 2615 853 246 46 4 chr12 15798631 15798911 -128483578 - L1ME2 LINE L1 -3638 2577 2286 13617 185 36 25 chr12 15798927 15799855 -128482634 - L1MA4A LINE L1 -6 6999 6083 2293 78 0 0 chr12 15799855 15800138 -128482351 - AluSc SINE Alu -24 285 3 13617 185 36 25 chr12 15800138 15800201 -128482288 - L1MA4A LINE L1 -922 6083 6022 228 35 0 0 chr12 15800201 15800230 -128482259 + (TTG)n Simple_repeat Simple_repeat 2 30 0 13617 185 36 25 chr12 15800230 15801360 -128481129 - L1MA4A LINE L1 -983 6022 4906 749 43 0 0 chr12 15801360 15801452 -128481037 - L1PA5 LINE L1 -9 6145 6054 13617 185 36 25 chr12 15801452 15805680 -128476809 - L1MA4A LINE L1 -2099 4906 568 284 301 55 27 chr12 15805699 15805845 -128476644 - L1ME2 LINE L1 -6140 256 107 396 199 81 99 chr12 15806071 15806232 -128476257 + MER5A DNA MER1_type 21 178 -11 1569 186 100 0 chr12 15807393 15807704 -128474785 + MER7A DNA MER2_type 2 341 -5 1555 218 29 35 chr12 15808035 15808094 -128474395 - MLT1A2 LTR MaLR 0 374 316 3840 113 6 2 chr12 15808094 15808617 -128473872 + MER1A DNA MER1_type 3 527 0 1555 218 29 35 chr12 15808617 15808933 -128473556 - MLT1A2 LTR MaLR -58 316 1 6803 70 7 1 chr12 15810133 15811529 -128470960 + L1PA7 LINE L1 4753 6154 0 315 309 27 18 chr12 15811557 15811667 -128470822 + MIR3 SINE MIR 85 195 -13 2238 161 84 0 chr12 15812651 15813068 -128469421 + LTR47A LTR ERVL 1 452 0 184 320 141 0 chr12 15813627 15813705 -128468784 + L2 LINE L2 3137 3225 -47 652 165 0 47 chr12 15814206 15814333 -128468156 + AluSq/x SINE Alu 1 121 -191 9029 165 32 13 chr12 15814333 15815941 -128466548 + L1PBa LINE L1 1107 2682 -4180 4982 37 2 0 chr12 15815941 15816540 -128465949 + L1PA4 LINE L1 5555 6154 -1 9029 165 32 13 chr12 15816540 15817868 -128464621 + L1PBa LINE L1 2682 4264 -2598 239 231 93 56 chr12 15817872 15817980 -128464509 - L1ME LINE L1 -5120 950 839 32 0 0 0 chr12 15818172 15818204 -128464285 + AT_rich Low_complexity Low_complexity 1 32 0 1092 148 20 30 chr12 15818219 15818272 -128464217 - L1MA4 LINE L1 -44 6256 6204 1988 94 3 28 chr12 15818272 15818558 -128463931 + AluSp SINE Alu 23 301 -12 1092 148 20 30 chr12 15818558 15818706 -128463783 - L1MA4 LINE L1 -96 6204 6057 1111 219 27 10 chr12 15819429 15819754 -128462735 + MLT1A1 LTR MaLR 1 363 -2 2138 108 0 53 chr12 15820796 15821119 -128461370 + AluSx SINE Alu 1 306 -6 824 240 22 0 chr12 15821415 15821598 -128460891 - MER5A DNA MER1_type -1 188 2 245 298 24 24 chr12 15821718 15821802 -128460687 + MIR SINE MIR 47 130 -78 349 280 51 8 chr12 15823020 15823138 -128459351 - MER94 DNA DNA -7 127 5 32 43 0 0 chr12 15823960 15824006 -128458483 + AT_rich Low_complexity Low_complexity 1 46 0 186 267 50 17 chr12 15824101 15824161 -128458328 + MER5B DNA MER1_type 65 126 -52 1725 197 54 8 chr12 15824174 15824545 -128457944 - MLT1B LTR MaLR -2 388 1 23 0 0 0 chr12 15825049 15825072 -128457417 + AT_rich Low_complexity Low_complexity 1 23 0 800 189 0 0 chr12 15825073 15825195 -128457294 - FLAM_C SINE Alu -19 124 3 458 336 47 32 chr12 15825401 15825654 -128456835 + MIR SINE MIR 5 261 -1 977 211 112 74 chr12 15825929 15826252 -128456237 - MLT1D LTR MaLR -113 392 58 1454 198 160 7 chr12 15826382 15826807 -128455682 - LTR54B LTR ERV1 -2 496 7 2248 181 2 5 chr12 15826996 15827393 -128455096 - MER57A LTR ERV1 0 403 8 242 269 11 32 chr12 15827449 15827542 -128454947 + GA-rich Low_complexity Low_complexity 4 94 0 401 262 113 85 chr12 15828563 15828845 -128453644 - L1ME4a LINE L1 -201 5920 5631 1162 184 0 34 chr12 15829064 15829303 -128453186 - AluJb SINE Alu -7 305 75 229 182 36 0 chr12 15829534 15829589 -128452900 + A-rich Low_complexity Low_complexity 5 61 0 323 341 15 15 chr12 15830157 15830292 -128452197 + MLT1K LTR MaLR 115 249 -339 226 0 59 0 chr12 15830356 15830390 -128452099 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 266 277 227 21 chr12 15830406 15830547 -128451942 + MLT1K LTR MaLR 419 588 0 397 291 18 9 chr12 15831970 15832080 -128450409 - MER5A DNA MER1_type -31 158 48 2012 152 45 20 chr12 15832651 15833006 -128449483 + THE1B LTR MaLR 1 364 0 2251 88 0 13 chr12 15833721 15834028 -128448461 - AluY SINE Alu -8 303 1 198 339 0 31 chr12 15834157 15834222 -128448267 + MIR SINE MIR 21 83 -125 927 164 32 25 chr12 15834343 15834530 -128447959 + MER33 DNA MER1_type 1 169 -86 4440 64 40 0 chr12 15834544 15835121 -128447368 - LTR17 LTR ERV1 0 780 181 6988 61 0 1 chr12 15835129 15836733 -128445756 - L1PA5 LINE L1 -2 6152 4550 4469 32 0 4 chr12 15836733 15837260 -128445229 + L1PA5 LINE L1 4010 4536 -1610 1500 55 0 0 chr12 15837260 15837443 -128445046 - LTR17 LTR ERV1 -597 183 1 1325 151 0 13 chr12 15837524 15837756 -128444733 - L1PA16 LINE L1 0 6166 5938 21 0 0 0 chr12 15837769 15837790 -128444699 + AT_rich Low_complexity Low_complexity 1 21 0 281 151 38 0 chr12 15837825 15837878 -128444611 + MER33 DNA MER1_type 308 362 -1 321 318 23 8 chr12 15838054 15838183 -128444306 - MER103 DNA DNA -4 162 32 2174 104 0 13 chr12 15839066 15839373 -128443116 - AluSq SINE Alu -10 303 1 32 67 0 0 chr12 15839644 15839704 -128442785 + AT_rich Low_complexity Low_complexity 1 60 0 4960 233 73 40 chr12 15839821 15842109 -128440380 - L1ME1 LINE L1 -11 6224 3825 306 50 0 0 chr12 15842109 15842149 -128440340 + (TG)n Simple_repeat Simple_repeat 1 40 0 4960 233 73 40 chr12 15842149 15842284 -128440205 - L1ME1 LINE L1 -2410 3825 3696 2106 267 66 13 chr12 15842294 15843458 -128439031 - L1ME1 LINE L1 -3102 3113 1916 2209 285 57 50 chr12 15843464 15843720 -128438769 - L1ME1 LINE L1 -4671 1725 1472 2028 150 0 3 chr12 15843720 15844033 -128438456 - AluSx SINE Alu 0 312 1 2209 285 57 50 chr12 15844033 15845223 -128437266 - L1ME1 LINE L1 -4924 1472 269 180 0 0 0 chr12 15845229 15845249 -128437240 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1849 158 0 0 chr12 15845258 15845536 -128436953 - AluSx SINE Alu -32 280 3 757 89 28 39 chr12 15845562 15845741 -128436748 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 809 244 5 24 chr12 15845764 15845973 -128436516 - L1ME1 LINE L1 -6143 253 49 264 367 22 11 chr12 15846641 15846731 -128435758 + L2 LINE L2 2941 3031 -241 517 285 59 54 chr12 15846856 15847077 -128435412 + MIR SINE MIR 3 224 -38 212 211 19 0 chr12 15847339 15847391 -128435098 + (TA)n Simple_repeat Simple_repeat 2 54 0 2491 64 0 6 chr12 15849910 15850223 -128432266 - AluY SINE Alu 0 311 1 535 217 77 0 chr12 15850355 15850498 -128431991 - MER103 DNA DNA -10 156 3 1936 126 37 3 chr12 15851127 15851421 -128431068 - AluSx SINE Alu -8 304 1 574 328 48 61 chr12 15852035 15852495 -128429994 + HAL1 LINE L1 1071 1524 -983 407 278 156 35 chr12 15852659 15852947 -128429542 + L1ME LINE L1 3038 3360 -2786 341 307 90 71 chr12 15853337 15853604 -128428885 + L1ME LINE L1 4741 5012 -1134 342 300 120 51 chr12 15853799 15854175 -128428314 + L1ME LINE L1 5255 5659 -503 843 150 169 0 chr12 15854196 15854356 -128428133 + MER5A DNA MER1_type 1 187 -2 39 22 0 0 chr12 15854544 15854590 -128427899 + AT_rich Low_complexity Low_complexity 1 46 0 954 254 62 0 chr12 15854622 15854862 -128427627 - MIR SINE MIR 0 262 8 183 176 24 153 chr12 15854797 15854882 -128427607 - L2 LINE L2 -923 2391 2318 * 243 0 0 0 chr12 15855060 15855087 -128427402 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 316 321 164 0 chr12 15856692 15856832 -128425657 + MIR3 SINE MIR 46 208 0 360 103 0 0 chr12 15857111 15857169 -128425320 + (CA)n Simple_repeat Simple_repeat 1 58 0 2185 145 57 5 chr12 15857962 15858369 -128424120 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr12 15858892 15858921 -128423568 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 15859014 15859046 -128423443 + AT_rich Low_complexity Low_complexity 1 32 0 337 290 84 19 chr12 15859093 15859355 -128423134 + L1M4 LINE L1 4421 4699 -1447 645 248 73 24 chr12 15859657 15859863 -128422626 + L2 LINE L2 3098 3313 0 630 295 6 0 chr12 15861111 15861294 -128421195 - MIR SINE MIR -39 223 40 22 0 0 0 chr12 15861466 15861488 -128421001 + AT_rich Low_complexity Low_complexity 1 22 0 2276 84 13 7 chr12 15862234 15862542 -128419947 - AluSg SINE Alu 0 310 1 103 66 0 13 chr12 15862914 15863141 -128419348 + AT_rich Low_complexity Low_complexity 1 224 0 21 36 0 0 chr12 15863774 15863802 -128418687 + AT_rich Low_complexity Low_complexity 1 28 0 312 159 16 16 chr12 15864100 15864163 -128418326 - MLT1G LTR MaLR -12 578 516 29 0 0 0 chr12 15865182 15865211 -128417278 + AT_rich Low_complexity Low_complexity 1 29 0 272 159 0 16 chr12 15865566 15865629 -128416860 + (TA)n Simple_repeat Simple_repeat 1 62 0 2368 68 16 3 chr12 15866156 15866463 -128416026 - AluY SINE Alu 0 311 1 267 326 95 0 chr12 15866657 15866752 -128415737 + L2 LINE L2 3208 3311 -2 389 292 70 22 chr12 15867315 15867500 -128414989 - MIR SINE MIR -66 196 3 217 159 136 0 chr12 15868928 15868972 -128413517 - L2 LINE L2 0 3313 3264 275 338 107 28 chr12 15869078 15869395 -128413094 - L2 LINE L2 -340 2974 2633 235 220 20 0 chr12 15869532 15869582 -128412907 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 266 227 80 13 chr12 15869582 15869657 -128412832 - L2 LINE L2 -2 3311 3232 23 86 0 0 chr12 15870743 15870801 -128411688 + AT_rich Low_complexity Low_complexity 1 58 0 372 356 22 40 chr12 15871394 15871669 -128410820 - L2 LINE L2 -446 2868 2599 3035 172 25 20 chr12 15871724 15872330 -128410159 - L1MC3 LINE L1 -1861 6342 5734 * 10629 198 48 34 chr12 15872326 15872592 -128409897 - L1MC1 LINE L1 0 6613 6352 270 81 0 0 chr12 15872592 15872629 -128409860 + (TA)n Simple_repeat Simple_repeat 2 38 0 10629 198 48 34 chr12 15872629 15874048 -128408441 - L1MC1 LINE L1 -261 6352 4955 1994 153 13 0 chr12 15874048 15874356 -128408133 - AluSx SINE Alu 0 312 1 10629 198 48 34 chr12 15874356 15878078 -128404411 - L1MC1 LINE L1 -1658 4955 942 4063 249 21 27 chr12 15878073 15879388 -128403101 - L1MC3 LINE L1 -812 5752 4445 * 251 237 214 0 chr12 15879377 15879522 -128402967 - L1MC3 LINE L1 -2462 4102 3928 * 1069 239 12 16 chr12 15879530 15879773 -128402716 + MLT1A1 LTR MaLR 1 242 -123 2247 215 49 63 chr12 15879774 15880598 -128401891 - L1MC3 LINE L1 -4433 2312 1302 1479 118 0 0 chr12 15880598 15880802 -128401687 - AluY SINE Alu -9 302 99 2247 215 49 63 chr12 15880802 15881010 -128401479 - L1MC3 LINE L1 -5443 1302 1093 555 248 16 33 chr12 15881022 15881244 -128401245 - L1MC3 LINE L1 -5846 343 1 345 247 36 0 chr12 15882718 15882884 -128399605 + (TA)n Simple_repeat Simple_repeat 2 173 0 267 261 15 0 chr12 15882939 15883004 -128399485 - L2 LINE L2 0 3272 3207 1566 232 45 49 chr12 15883021 15883509 -128398980 - L2 LINE L2 -1 3312 2827 1813 268 113 6 chr12 15883519 15884157 -128398332 - L2 LINE L2 -818 2496 1791 438 267 33 0 chr12 15885788 15885908 -128396581 - MER94 DNA DNA -10 124 1 399 319 30 24 chr12 15885938 15886104 -128396385 - MIR SINE MIR -95 167 1 22 0 0 0 chr12 15886513 15886535 -128395954 + AT_rich Low_complexity Low_complexity 1 22 0 2555 58 0 3 chr12 15888302 15888614 -128393875 - AluY SINE Alu 0 311 1 22 70 0 0 chr12 15888785 15888828 -128393661 + AT_rich Low_complexity Low_complexity 1 43 0 198 335 72 26 chr12 15888873 15889025 -128393464 - L2 LINE L2 -39 3233 3075 282 284 49 0 chr12 15889313 15889394 -128393095 - MER117 DNA MER1_type -36 161 77 27 0 0 0 chr12 15889686 15889713 -128392776 + AT_rich Low_complexity Low_complexity 1 27 0 515 269 82 12 chr12 15889806 15889977 -128392512 + MIR SINE MIR 49 231 -31 441 284 222 0 chr12 15889994 15890195 -128392294 - MIR SINE MIR 0 262 19 1899 179 89 21 chr12 15893207 15893644 -128388845 + MLT1C LTR MaLR 1 467 0 1313 199 63 102 chr12 15895247 15895372 -128387117 - Charlie4a DNA MER1_type -1456 505 377 620 13 0 0 chr12 15895372 15895448 -128387041 + L1PA2 LINE L1 6074 6149 -6 1313 199 63 102 chr12 15895448 15895844 -128386645 - Charlie4a DNA MER1_type -1584 377 4 545 272 77 35 chr12 15896229 15896398 -128386091 + MIR SINE MIR 27 202 -60 3382 197 44 95 chr12 15897238 15897721 -128384768 - L1MC4 LINE L1 -6 8036 7530 1918 176 0 0 chr12 15897721 15898027 -128384462 - AluJo SINE Alu -6 306 1 3382 197 44 95 chr12 15898027 15898293 -128384196 - L1MC4 LINE L1 -512 7530 7252 180 0 0 0 chr12 15898293 15898313 -128384176 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 3382 197 44 95 chr12 15898313 15898741 -128383748 - L1MC4 LINE L1 -790 7252 6918 2409 66 0 3 chr12 15898987 15899288 -128383201 + AluY SINE Alu 1 300 -11 240 274 52 89 chr12 15899943 15900078 -128382411 + MIR SINE MIR 83 212 -50 21 0 0 0 chr12 15900086 15900107 -128382382 + AT_rich Low_complexity Low_complexity 1 21 0 1962 138 0 3 chr12 15900302 15900675 -128381814 + AluSc SINE Alu 3 374 0 382 340 13 13 chr12 15901051 15901201 -128381288 - L2 LINE L2 0 3313 3164 * 213 39 0 0 chr12 15901208 15901234 -128381255 + (TAA)n Simple_repeat Simple_repeat 2 27 0 569 286 85 5 chr12 15901234 15901423 -128381066 - MIR SINE MIR -7 255 48 467 305 46 0 chr12 15902191 15902322 -128380167 - MIR3 SINE MIR -33 175 39 614 275 138 4 chr12 15902996 15903243 -128379246 - LTR33A LTR ERVL 0 523 244 530 256 55 24 chr12 15903375 15903539 -128378950 - LTR33A LTR ERVL -337 186 18 186 329 12 24 chr12 15905855 15905937 -128376552 + MIR SINE MIR 73 153 -109 603 112 0 0 chr12 15905939 15906037 -128376452 + (TGG)n Simple_repeat Simple_repeat 1 98 0 718 0 0 0 chr12 15906299 15906383 -128376106 - L1PA2 LINE L1 -3 6152 6069 801 183 61 17 chr12 15906817 15906997 -128375492 - MER5A DNA MER1_type -1 188 1 340 298 46 71 chr12 15907757 15907960 -128374529 + MIR SINE MIR 16 212 -50 238 300 136 0 chr12 15908239 15908349 -128374140 - MIR SINE MIR -75 187 63 207 95 71 0 chr12 15908425 15908467 -128374022 + T-rich Low_complexity Low_complexity 2 46 0 1872 193 95 25 chr12 15908670 15909156 -128373333 + MLT2B1 LTR ERVL 1 520 0 423 0 0 0 chr12 15909366 15909413 -128373076 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr12 15909610 15909633 -128372856 + AT_rich Low_complexity Low_complexity 1 23 0 903 162 21 90 chr12 15909662 15909896 -128372593 + L1MC1 LINE L1 6116 6333 0 4888 183 34 18 chr12 15911412 15913395 -128369094 - L1MB8 LINE L1 -6 6670 4658 5438 228 55 47 chr12 15913414 15913921 -128368568 - L1MB8 LINE L1 -4550 2096 1595 198 0 0 0 chr12 15913921 15913943 -128368546 + (TG)n Simple_repeat Simple_repeat 2 23 0 5438 228 55 47 chr12 15913943 15914779 -128367710 - L1MB8 LINE L1 -5051 1595 765 495 0 0 0 chr12 15914779 15914834 -128367655 + (TG)n Simple_repeat Simple_repeat 2 56 0 5438 228 55 47 chr12 15914834 15915591 -128366898 - L1MB8 LINE L1 -5881 765 16 300 373 4 66 chr12 15915751 15915995 -128366494 - L3 LINE CR1 -364 1213 985 28 61 0 0 chr12 15916193 15916242 -128366247 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr12 15916363 15916384 -128366105 + AT_rich Low_complexity Low_complexity 1 21 0 2065 142 0 0 chr12 15916616 15916912 -128365577 + AluSx SINE Alu 1 296 -16 183 42 0 0 chr12 15917281 15917305 -128365184 + (T)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr12 15917416 15917444 -128365045 + AT_rich Low_complexity Low_complexity 1 28 0 443 224 0 90 chr12 15917963 15918097 -128364392 + MIR SINE MIR 31 152 -110 21 0 0 0 chr12 15918285 15918306 -128364183 + AT_rich Low_complexity Low_complexity 1 21 0 917 232 50 9 chr12 15920920 15921140 -128361349 + MIR SINE MIR 34 262 0 2174 117 3 0 chr12 15921503 15921803 -128360686 - AluSp SINE Alu -12 301 1 1612 180 3 22 chr12 15922238 15922554 -128359935 + AluJo SINE Alu 1 310 -2 21 36 0 0 chr12 15922834 15922862 -128359627 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 15923139 15923168 -128359321 + AT_rich Low_complexity Low_complexity 1 29 0 302 239 28 14 chr12 15924742 15924813 -128357676 - MER5B DNA MER1_type -106 72 1 950 147 82 27 chr12 15925107 15925291 -128357198 + L1PA16 LINE L1 5973 6166 0 358 280 108 19 chr12 15925301 15925515 -128356974 + L1M4 LINE L1 3221 3453 -2693 37 23 0 0 chr12 15925658 15925702 -128356787 + AT_rich Low_complexity Low_complexity 1 44 0 23 78 0 0 chr12 15925826 15925877 -128356612 + AT_rich Low_complexity Low_complexity 1 51 0 304 179 26 0 chr12 15925990 15926068 -128356421 + GA-rich Low_complexity Low_complexity 3 82 0 2108 129 0 0 chr12 15927009 15927304 -128355185 - AluSq SINE Alu -18 295 1 343 337 65 35 chr12 15927468 15927637 -128354852 - MIR3 SINE MIR -11 197 24 930 287 125 34 chr12 15928495 15929158 -128353331 + L2 LINE L2 2602 3310 -3 1446 132 45 0 chr12 15929658 15929878 -128352611 + MER30 DNA MER1_type 1 230 0 983 285 96 0 chr12 15930181 15930462 -128352027 - MLT1E LTR MaLR 0 593 286 491 222 0 20 chr12 15930476 15930575 -128351914 - MLT1E LTR MaLR -430 163 67 286 340 123 33 chr12 15930857 15931069 -128351420 + L2 LINE L2 2651 2881 -433 2356 156 57 0 chr12 15931452 15931857 -128350632 + MSTA LTR MaLR 1 428 0 3166 216 102 42 chr12 15931929 15932964 -128349525 - L1MC4a LINE L1 0 7808 6711 507 33 0 0 chr12 15934997 15935058 -128347431 + (TG)n Simple_repeat Simple_repeat 2 62 0 423 275 36 99 chr12 15936456 15936678 -128345811 - MIR SINE MIR -18 244 37 532 290 9 55 chr12 15936886 15937103 -128345386 + MIR SINE MIR 32 238 -24 1521 234 76 39 chr12 15938032 15938493 -128343996 - MLT1D LTR MaLR -27 478 1 424 193 45 142 chr12 15938493 15938669 -128343820 - MLT1D-int LTR MaLR 0 1371 1213 183 204 0 0 chr12 15939104 15939153 -128343336 + (CA)n Simple_repeat Simple_repeat 2 50 0 513 291 92 39 chr12 15940754 15940960 -128341529 + MIR SINE MIR 23 239 -23 263 147 0 77 chr12 15940993 15941163 -128341326 + (TAA)n Simple_repeat Simple_repeat 1 157 0 329 286 38 53 chr12 15941219 15941352 -128341137 - MIR SINE MIR -62 200 70 5472 172 5 44 chr12 15941540 15942831 -128339658 - L1MA10 LINE L1 -1 6333 5086 5034 187 25 20 chr12 15942834 15943956 -128338533 + L1MA10 LINE L1 3953 5079 -1067 632 212 67 12 chr12 15944395 15944560 -128337929 + L1MD3 LINE L1 7812 7985 -10 339 271 74 8 chr12 15945735 15945857 -128336632 + L2 LINE L2 3161 3290 -23 879 249 0 0 chr12 15945941 15946130 -128336359 + MER5A DNA MER1_type 1 189 0 1021 345 98 23 chr12 15946685 15946883 -128335606 + L3 LINE CR1 692 874 -703 243 0 0 0 chr12 15946883 15946910 -128335579 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1021 345 98 23 chr12 15946910 15947364 -128335125 + L3 LINE CR1 874 1393 -184 1691 183 66 29 chr12 15947376 15947753 -128334736 + MLT2C1 LTR ERVL 7 397 0 190 325 13 26 chr12 15947776 15947853 -128334636 + L3 LINE CR1 1409 1484 -93 290 302 52 10 chr12 15947947 15948043 -128334446 - L2 LINE L2 -18 3295 3196 187 200 0 0 chr12 15948090 15948125 -128334364 + L2 LINE L2 3274 3308 -5 191 100 0 50 chr12 15948169 15948209 -128334280 + (CATA)n Simple_repeat Simple_repeat 2 39 0 182 316 18 0 chr12 15949285 15949342 -128333147 + MIR SINE MIR 37 94 -114 2889 184 21 10 chr12 15950625 15950730 -128331759 + L1MA7 LINE L1 5681 5783 -508 396 0 0 0 chr12 15950730 15950774 -128331715 + (CA)n Simple_repeat Simple_repeat 2 45 0 2889 184 21 10 chr12 15950774 15951272 -128331217 + L1MA7 LINE L1 5783 6291 0 2918 6 0 0 chr12 15951488 15951804 -128330685 - AluYb8 SINE Alu -2 316 1 432 55 0 0 chr12 15953439 15953494 -128328995 + (TG)n Simple_repeat Simple_repeat 1 55 0 377 216 240 0 chr12 15953639 15953764 -128328725 - MIR SINE MIR -18 244 90 944 171 0 13 chr12 15954145 15954303 -128328186 + FRAM SINE Alu 1 155 -21 258 266 38 25 chr12 15954596 15954675 -128327814 - MIR3 SINE MIR -16 192 113 533 325 68 46 chr12 15954692 15955191 -128327298 - L2 LINE L2 -1096 2218 1709 198 383 32 21 chr12 15956443 15956537 -128325952 - L2 LINE L2 -4 3268 3174 274 303 56 0 chr12 15957093 15957182 -128325307 - MIR SINE MIR -6 256 163 612 296 152 76 chr12 15957884 15958675 -128323814 - L3 LINE CR1 -37 1540 690 283 301 169 0 chr12 15961124 15961260 -128321229 - MIR SINE MIR -52 210 52 263 278 42 62 chr12 15961432 15961576 -128320913 - MIR SINE MIR -31 231 91 358 307 31 110 chr12 15961967 15962195 -128320294 + L2 LINE L2 3063 3272 0 269 314 32 24 chr12 15962263 15962387 -128320102 - L2 LINE L2 -1012 2302 2178 21 0 0 0 chr12 15962501 15962522 -128319967 + AT_rich Low_complexity Low_complexity 1 21 0 312 131 0 33 chr12 15962600 15962661 -128319828 + AluSp SINE Alu 75 133 -170 2050 140 0 0 chr12 15962664 15962956 -128319533 + AluSx SINE Alu 1 292 -20 1236 255 117 47 chr12 15963507 15964252 -128318237 - HAL1b LINE L1 -17 1331 535 228 286 14 0 chr12 15965068 15965138 -128317351 + L1ME LINE L1 196 266 -5939 6416 18 0 36 chr12 15965419 15966205 -128316284 + L1PA2 LINE L1 5396 6153 -2 758 286 46 44 chr12 15966462 15966561 -128315928 + L1ME LINE L1 655 752 -5463 1141 187 107 64 chr12 15966561 15966935 -128315554 - MLT1B LTR MaLR 0 390 1 758 286 46 44 chr12 15966935 15967698 -128314791 + L1ME LINE L1 752 1495 -4720 2455 82 3 0 chr12 15967946 15968252 -128314237 + AluSp SINE Alu 3 309 -4 1009 251 60 36 chr12 15968252 15968782 -128313707 + L1ME LINE L1 1889 2431 -3965 207 179 0 0 chr12 15970330 15970369 -128312120 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 89 0 0 chr12 15970884 15970929 -128311560 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr12 15972044 15972067 -128310422 + AT_rich Low_complexity Low_complexity 1 23 0 1186 229 53 15 chr12 15972685 15973025 -128309464 + MLT1B LTR MaLR 33 385 -5 5390 120 16 27 chr12 15974544 15975428 -128307061 - L1PB1 LINE L1 -4 6147 5274 1943 144 10 10 chr12 15975654 15975952 -128306537 - AluSx SINE Alu -14 298 1 188 294 88 0 chr12 15976838 15976906 -128305583 - MIR SINE MIR -58 150 77 442 326 15 0 chr12 15977009 15977141 -128305348 - L2 LINE L2 -1 3271 3138 306 284 60 17 chr12 15978394 15978510 -128303979 - MLT1J2 LTR MaLR -272 178 58 370 250 11 0 chr12 15978601 15978689 -128303800 - MIR SINE MIR -111 151 63 198 143 0 0 chr12 15980604 15980639 -128301850 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 225 363 55 14 chr12 15980984 15981130 -128301359 + L2 LINE L2 2094 2245 -1069 1514 201 0 34 chr12 15981505 15981798 -128300691 - AluJo SINE Alu -21 291 9 684 362 37 28 chr12 15982407 15982871 -128299618 + L2 LINE L2 2225 2692 -622 231 267 67 38 chr12 15983689 15983794 -128298695 + MLT1K LTR MaLR 481 588 0 318 239 122 52 chr12 15983981 15984194 -128298295 + MER5C DNA MER1_type 58 285 -39 285 220 20 10 chr12 15984219 15984319 -128298170 + GA-rich Low_complexity Low_complexity 5 105 0 299 184 0 0 chr12 15984431 15984480 -128298009 - Alu SINE Alu -254 49 1 209 279 16 126 chr12 15984632 15984886 -128297603 - L2 LINE L2 -649 2665 2440 610 328 84 42 chr12 15984937 15985245 -128297244 - MLT1K LTR MaLR -109 479 159 244 258 15 30 chr12 15985347 15985413 -128297076 + MER91A DNA MER1_type 35 99 -97 328 153 33 20 chr12 15985611 15985761 -128296728 + (TA)n Simple_repeat Simple_repeat 1 152 0 2575 41 0 0 chr12 15985761 15986055 -128296434 - AluY SINE Alu -17 294 1 236 204 60 17 chr12 15986417 15986500 -128295989 - MIR SINE MIR -67 141 91 701 169 29 7 chr12 15987050 15987186 -128295303 + MER5B DNA MER1_type 1 139 -39 407 301 24 8 chr12 15987208 15987331 -128295158 - MER5A DNA MER1_type 0 189 65 22 0 0 0 chr12 15987797 15987819 -128294670 + AT_rich Low_complexity Low_complexity 1 22 0 1766 120 66 15 chr12 15988162 15988436 -128294053 - AluSx SINE Alu -1 311 24 350 277 102 23 chr12 15989871 15990048 -128292441 + MIR SINE MIR 72 262 0 393 133 0 0 chr12 15990436 15990511 -128291978 + (TG)n Simple_repeat Simple_repeat 2 76 0 965 252 37 8 chr12 15991366 15991608 -128290881 - MIR SINE MIR -8 254 6 279 284 14 0 chr12 15992620 15992694 -128289795 + LTR16A1 LTR ERVL 5 79 -378 806 270 42 12 chr12 15992770 15993029 -128289460 + LTR16A1 LTR ERVL 191 457 0 25 31 0 0 chr12 15993615 15993647 -128288842 + AT_rich Low_complexity Low_complexity 1 32 0 537 265 55 32 chr12 15994777 15994996 -128287493 + Charlie7 DNA MER1_type 51 274 -2338 764 251 170 19 chr12 15995015 15995338 -128287151 + Charlie7 DNA MER1_type 407 778 -1834 633 197 14 20 chr12 15995348 15995495 -128286994 + Charlie7 DNA MER1_type 1644 1789 -823 6369 6 0 1 chr12 15995501 15996213 -128286276 - L1PA2 LINE L1 -3 6152 5442 3720 23 1 0 chr12 15996213 15996700 -128285789 + L1P LINE L1 4940 5427 -728 1219 264 63 9 chr12 15996700 15997163 -128285326 + Charlie7 DNA MER1_type 1773 2260 -352 6304 259 65 20 chr12 15997163 16000098 -128282391 + L1MEc LINE L1 37 3214 -3001 1053 187 9 57 chr12 16000098 16000328 -128282161 + MER20 DNA MER1_type 1 219 0 6304 259 65 20 chr12 16000328 16000946 -128281543 + L1MEc LINE L1 3214 3802 -2413 2392 254 67 7 chr12 16000978 16001784 -128280705 + L1M4 LINE L1 4519 5372 -774 969 161 52 35 chr12 16001786 16001918 -128280571 - MER44D DNA MER2_type -1987 504 376 357 24 0 0 chr12 16001918 16001960 -128280529 + (CA)n Simple_repeat Simple_repeat 1 42 0 969 161 52 35 chr12 16001960 16002057 -128280432 - MER44D DNA MER2_type -2115 376 1 562 168 15 84 chr12 16002537 16002668 -128279821 + L1PA16 LINE L1 6044 6165 -1 1958 244 25 17 chr12 16002708 16003224 -128279265 - L1ME1 LINE L1 -5 6161 5642 5186 124 50 25 chr12 16003224 16003493 -128278996 - Tigger3b DNA MER2_type -1813 1215 954 2002 123 0 40 chr12 16003493 16003793 -128278696 + AluSx SINE Alu 1 288 -24 5186 124 50 25 chr12 16003793 16004442 -128278047 - Tigger3b DNA MER2_type -2074 954 274 440 213 9 65 chr12 16004440 16004548 -128277941 - Tigger3b DNA MER2_type -1129 102 1 * 404 200 12 12 chr12 16004548 16004623 -128277866 + MER44D DNA MER2_type 526 600 -9 791 306 65 40 chr12 16004658 16005279 -128277210 + HERVL LTR ERVL 2158 4687 -1077 1046 186 83 21 chr12 16005381 16005671 -128276818 + MER69 DNA AcHobo 2194 2501 -25 5513 183 44 11 chr12 16006804 16008277 -128274212 + L1MA3 LINE L1 15 2200 -5365 1316 222 149 16 chr12 16008284 16008654 -128273835 + MSTB LTR MaLR 9 426 0 15041 166 44 15 chr12 16008654 16011347 -128271142 + L1MA3 LINE L1 2195 4809 -2915 1618 178 67 28 chr12 16011347 16011706 -128270783 - THE1C LTR MaLR 0 375 3 9624 119 43 21 chr12 16011708 16013255 -128269234 - THE1C-int LTR MaLR 0 1580 1 1713 154 70 22 chr12 16013255 16013613 -128268876 - THE1C LTR MaLR 0 375 1 15041 166 44 15 chr12 16013613 16015375 -128267114 + L1MA3 LINE L1 4809 6846 -878 1120 60 13 0 chr12 16015375 16015524 -128266965 + L1PA4 LINE L1 6002 6152 -3 15041 166 44 15 chr12 16015524 16016430 -128266059 + L1MA3 LINE L1 6846 7724 0 1823 36 3 2 chr12 16016595 16016819 -128265670 + L1PA5 LINE L1 5764 5991 -163 19791 176 18 18 chr12 16016820 16020552 -128261937 - L1 LINE L1 -3816 3749 17 1901 164 14 8 chr12 16020636 16020989 -128261500 - L1MA6 LINE L1 -5 6295 5941 227 67 0 0 chr12 16020995 16021025 -128261464 + L1M4 LINE L1 5844 5873 -311 2023 188 59 5 chr12 16021082 16021486 -128261003 + MSTB LTR MaLR 1 426 0 911 252 33 4 chr12 16023235 16023477 -128259012 + L2 LINE L2 2135 2383 -931 664 202 0 17 chr12 16023509 16023628 -128258861 - FRAM SINE Alu -24 152 36 196 276 66 13 chr12 16023637 16023713 -128258776 + L2 LINE L2 2404 2483 -831 680 115 36 14 chr12 16023713 16023852 -128258637 + CT-rich Low_complexity Low_complexity 3 144 0 5740 221 37 2 chr12 16023853 16025258 -128257231 - L1 LINE L1 -2452 5113 3660 * 7189 202 36 10 chr12 16025253 16026686 -128255803 - L1 LINE L1 -6082 1483 13 1267 261 37 8 chr12 16026755 16027130 -128255359 - L1ME1 LINE L1 -25 6141 5756 699 327 100 66 chr12 16027641 16027814 -128254675 - L2 LINE L2 -331 2982 2816 2079 132 10 0 chr12 16027814 16028118 -128254371 - AluSq SINE Alu -6 307 1 699 327 100 66 chr12 16028118 16029170 -128253319 - L2 LINE L2 -497 2816 1715 357 24 0 0 chr12 16032423 16032465 -128250024 + (TA)n Simple_repeat Simple_repeat 2 43 0 441 254 23 11 chr12 16033208 16033385 -128249104 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 2385 137 48 17 chr12 16033885 16034300 -128248189 - Tigger2a DNA MER2_type -2 432 5 28 79 0 0 chr12 16036461 16036524 -128245965 + AT_rich Low_complexity Low_complexity 1 63 0 214 288 61 0 chr12 16037199 16037265 -128245224 - MIR SINE MIR -13 249 180 447 63 0 0 chr12 16039472 16039535 -128242954 + (TG)n Simple_repeat Simple_repeat 2 64 0 333 172 0 0 chr12 16040912 16040976 -128241513 + (TG)n Simple_repeat Simple_repeat 2 65 0 204 262 66 16 chr12 16041754 16041815 -128240674 + MIR SINE MIR 26 89 -119 421 227 8 34 chr12 16042038 16042157 -128240332 + L2 LINE L2 1894 2009 -1305 283 329 0 46 chr12 16042255 16042407 -128240082 + L2 LINE L2 3168 3312 -1 514 351 50 29 chr12 16042584 16042863 -128239626 + L1MCc LINE L1 315 599 -5824 28 61 0 0 chr12 16042961 16043010 -128239479 + AT_rich Low_complexity Low_complexity 1 49 0 627 262 81 61 chr12 16043177 16043722 -128238767 + L1MCc LINE L1 1517 2072 -4869 2421 259 58 40 chr12 16043796 16044950 -128237539 + L1MCc LINE L1 2307 3451 -3490 2238 121 0 6 chr12 16044950 16045264 -128237225 + AluSx SINE Alu 1 312 0 2421 259 58 40 chr12 16045264 16045846 -128236643 + L1MCc LINE L1 3451 4021 -2920 6187 183 45 2 chr12 16045862 16047138 -128235351 + L1MCc LINE L1 4304 5635 -1306 1118 244 61 46 chr12 16047153 16047498 -128234991 + MLT1A1 LTR MaLR 16 365 0 397 247 11 0 chr12 16047498 16047587 -128234902 + L1MCc LINE L1 5639 5728 -1213 659 287 148 37 chr12 16047594 16048652 -128233837 + L1ME3A LINE L1 4178 5117 -1053 2174 202 33 2 chr12 16048652 16049102 -128233387 + MLT1C LTR MaLR 1 464 -3 659 287 148 37 chr12 16049102 16049496 -128232993 + L1ME3A LINE L1 5117 5466 -704 876 177 32 170 chr12 16049496 16049773 -128232716 - MER8 DNA MER2_type 0 239 1 659 287 148 37 chr12 16049773 16049845 -128232644 + L1ME3A LINE L1 5466 5873 -297 1892 133 136 24 chr12 16051072 16051455 -128231034 - MSTA LTR MaLR -2 426 1 1861 121 26 11 chr12 16051665 16051937 -128230552 - AluSx SINE Alu -34 278 3 198 313 187 20 chr12 16051956 16052106 -128230383 + MIR SINE MIR 88 262 0 182 333 189 18 chr12 16052302 16052413 -128230076 + MIR3 SINE MIR 47 176 -32 1679 110 38 19 chr12 16052857 16053121 -128229368 - AluSx SINE Alu -15 297 29 21 0 0 0 chr12 16053692 16053713 -128228776 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr12 16054764 16054803 -128227686 + AT_rich Low_complexity Low_complexity 1 39 0 184 100 50 33 chr12 16054822 16054882 -128227607 + (TAA)n Simple_repeat Simple_repeat 2 62 0 1139 243 35 49 chr12 16055069 16055434 -128227055 + MLT1D LTR MaLR 34 393 -112 1368 120 14 10 chr12 16055434 16055800 -128226689 - MSTA LTR MaLR 0 428 1 547 220 0 8 chr12 16055800 16055918 -128226571 + MLT1D LTR MaLR 389 505 0 229 208 0 0 chr12 16056257 16056310 -128226179 + LTR66 LTR ERVL 394 446 -164 200 351 14 0 chr12 16056310 16056384 -128226105 + (CATATA)n Simple_repeat Simple_repeat 6 80 0 248 233 137 0 chr12 16056827 16056900 -128225589 + MIR SINE MIR 16 98 -164 240 143 0 0 chr12 16057035 16057077 -128225412 + (GGAGA)n Simple_repeat Simple_repeat 1 42 0 206 200 25 0 chr12 16057078 16057118 -128225371 + MER5C DNA MER1_type 284 324 0 24 53 0 0 chr12 16058041 16058079 -128224410 + AT_rich Low_complexity Low_complexity 1 38 0 6114 206 40 15 chr12 16058098 16061397 -128221092 + L1MA4 LINE L1 3 3386 -2942 1575 168 7 7 chr12 16061398 16061690 -128220799 - AluSq SINE Alu -8 305 14 261 235 12 0 chr12 16061968 16062053 -128220436 - L1 LINE L1 -2951 3195 3110 2074 124 3 7 chr12 16062053 16062359 -128220130 - AluSq SINE Alu -8 305 1 9863 168 33 31 chr12 16062361 16064989 -128217500 + L1MA4 LINE L1 3385 6016 -466 1096 177 51 9 chr12 16064989 16065204 -128217285 + THE1C LTR MaLR 1 224 -151 233 253 0 72 chr12 16066843 16066926 -128215563 - L2 LINE L2 -359 2913 2837 2262 87 3 0 chr12 16066999 16067286 -128215203 + AluSq SINE Alu 11 298 -15 512 302 114 67 chr12 16068784 16069142 -128213347 - L2 LINE L2 -1 3271 2897 731 284 126 30 chr12 16069596 16070071 -128212418 + LTR33 LTR ERVL 1 521 0 534 287 60 31 chr12 16070536 16070761 -128211728 + MIR SINE MIR 15 252 -10 341 287 32 0 chr12 16071001 16071095 -128211394 + MER103 DNA DNA 66 162 -4 1622 133 8 16 chr12 16071112 16071361 -128211128 - AluSx SINE Alu -2 310 64 216 208 21 0 chr12 16072297 16072345 -128210144 + MIR SINE MIR 213 261 -1 * 791 275 45 38 chr12 16072340 16072653 -128209836 + L2 LINE L2 2999 3313 0 433 254 102 0 chr12 16076503 16076621 -128205868 + MER94 DNA DNA 2 131 -3 2345 252 60 9 chr12 16076719 16077404 -128205085 + L1MD2 LINE L1 5646 6357 -2 293 333 106 0 chr12 16079222 16079354 -128203135 - MIR SINE MIR -8 254 109 328 282 19 10 chr12 16081030 16081133 -128201356 + MIR SINE MIR 127 230 -32 246 281 0 0 chr12 16081574 16081631 -128200858 - L2 LINE L2 0 3272 3216 1648 196 3 3 chr12 16082558 16082849 -128199640 + AluJo SINE Alu 1 291 -21 2065 40 61 29 chr12 16082859 16083137 -128199352 - AluY SINE Alu -24 287 1 3666 65 23 0 chr12 16084440 16084913 -128197576 + L1PA7 LINE L1 5671 6154 0 472 354 23 40 chr12 16085919 16086280 -128196209 + L2 LINE L2 2704 3058 -214 319 294 83 0 chr12 16086684 16086793 -128195696 + L2 LINE L2 3155 3272 0 196 244 0 134 chr12 16087125 16087172 -128195317 - L2 LINE L2 -9 3304 3271 1442 233 93 92 chr12 16087172 16087629 -128194860 + MLT1E2 LTR MaLR 3 463 -163 2154 43 6 93 chr12 16087629 16087953 -128194536 + AluY SINE Alu 1 296 -15 1442 233 93 92 chr12 16087953 16088118 -128194371 + MLT1E2 LTR MaLR 463 626 0 196 244 0 134 chr12 16088118 16088152 -128194337 - L2 LINE L2 -42 3271 3234 266 317 102 61 chr12 16088663 16088909 -128193580 - MIR SINE MIR -1 261 6 438 346 107 7 chr12 16088952 16089241 -128193248 - L2 LINE L2 -782 2532 2215 522 268 132 26 chr12 16090654 16090926 -128191563 + MLT1K LTR MaLR 267 567 -21 2462 74 3 3 chr12 16091521 16091832 -128190657 + AluY SINE Alu 1 311 0 201 109 0 65 chr12 16092344 16092390 -128190099 + (CCCA)n Simple_repeat Simple_repeat 3 45 0 7820 128 20 24 chr12 16092393 16093696 -128188793 - HSMAR2 DNA Mariner -2 1300 3 247 361 65 0 chr12 16093866 16093974 -128188515 - MIR SINE MIR -49 213 99 181 269 0 90 chr12 16095834 16095901 -128186588 + MIR SINE MIR 84 144 -118 7564 25 5 1 chr12 16096655 16097551 -128184938 + L1PA3 LINE L1 5257 6155 0 294 358 88 20 chr12 16097726 16097874 -128184615 - MIR3 SINE MIR -34 174 17 369 272 75 101 chr12 16098348 16098565 -128183924 - L1 LINE L1 -1552 4594 4388 1578 139 92 31 chr12 16098565 16098723 -128183766 - AluSx SINE Alu 0 312 165 180 0 0 0 chr12 16098723 16098743 -128183746 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1578 139 92 31 chr12 16098743 16098878 -128183611 - AluSx SINE Alu -147 165 1 369 272 75 101 chr12 16098878 16099006 -128183483 - L1 LINE L1 -1758 4388 4258 489 333 128 41 chr12 16099013 16099379 -128183110 + L2 LINE L2 2825 3222 -91 186 43 0 0 chr12 16099748 16099771 -128182718 + (TC)n Simple_repeat Simple_repeat 2 24 0 210 171 0 0 chr12 16099771 16099806 -128182683 + (TA)n Simple_repeat Simple_repeat 1 35 0 198 263 0 0 chr12 16099972 16100029 -128182460 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 2315 105 0 10 chr12 16100198 16100511 -128181978 + AluSg SINE Alu 1 310 0 23 0 0 0 chr12 16101801 16101824 -128180665 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr12 16101993 16102028 -128180461 + AT_rich Low_complexity Low_complexity 1 35 0 712 315 17 40 chr12 16102450 16102748 -128179741 + L3 LINE CR1 716 1006 -571 1326 277 92 66 chr12 16106562 16107496 -128174993 + L2 LINE L2 2229 3198 -115 182 33 67 0 chr12 16107496 16107526 -128174963 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 1326 277 92 66 chr12 16107526 16107642 -128174847 + L2 LINE L2 3198 3310 -3 2115 121 0 0 chr12 16108815 16109105 -128173384 + AluSx SINE Alu 1 290 -22 327 229 67 0 chr12 16109750 16109855 -128172634 + L1ME4a LINE L1 5573 5684 -437 294 261 80 0 chr12 16109892 16109980 -128172509 + L1ME4a LINE L1 5696 5790 -2018 240 200 0 0 chr12 16110147 16110197 -128172292 + L1ME4a LINE L1 6068 6117 -4 2235 99 3 3 chr12 16110283 16110577 -128171912 - AluSx SINE Alu -17 295 2 2245 144 13 13 chr12 16110716 16111091 -128171398 + THE1C LTR MaLR 1 375 0 198 229 0 0 chr12 16112683 16112731 -128169758 - L2 LINE L2 -3 3310 3263 5398 211 84 40 chr12 16113308 16114522 -128167967 + L1MB3 LINE L1 1 1160 -5799 2181 127 0 16 chr12 16114522 16114837 -128167652 + AluSg SINE Alu 1 310 0 5398 211 84 40 chr12 16114837 16115588 -128166901 + L1MB3 LINE L1 1160 2393 -4566 1944 187 17 14 chr12 16115593 16115951 -128166538 - MLT1A1 LTR MaLR -1 364 6 3774 220 17 58 chr12 16115972 16117812 -128164677 + L1MB3 LINE L1 2506 4513 -2444 1712 243 126 24 chr12 16117782 16118286 -128164203 + L1MB3 LINE L1 5987 6438 -556 * 1953 128 3 38 chr12 16118286 16118599 -128163890 + AluSx SINE Alu 3 304 -8 1712 243 126 24 chr12 16118599 16119014 -128163475 + L1MB3 LINE L1 6438 6994 0 252 302 85 31 chr12 16119114 16119243 -128163246 + MIR SINE MIR 49 184 -78 240 59 0 0 chr12 16121206 16121240 -128161249 + (TA)n Simple_repeat Simple_repeat 2 35 0 2890 169 26 35 chr12 16121876 16122481 -128160008 - L1MA7 LINE L1 -3 6288 5689 1896 154 10 3 chr12 16122520 16122826 -128159663 - MER4D LTR ERV1 0 903 596 2926 128 15 19 chr12 16122826 16123287 -128159202 - MER4D LTR ERV1 -413 459 1 377 127 7 7 chr12 16123287 16123359 -128159130 - L1MA7 LINE L1 -512 5668 5600 1416 234 29 35 chr12 16123383 16123759 -128158730 - MLT1A2 LTR MaLR 0 374 1 2251 108 3 3 chr12 16124579 16124886 -128157603 + AluSc SINE Alu 1 307 -2 212 0 36 0 chr12 16124902 16124930 -128157559 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 521 312 108 25 chr12 16125133 16125495 -128156994 + L1MEd LINE L1 627 1018 -5101 186 43 0 0 chr12 16125498 16125521 -128156968 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 385 162 14 0 chr12 16125586 16125660 -128156829 - MER116 DNA Mariner -4 76 2 208 332 252 7 chr12 16126494 16126768 -128155721 + L2 LINE L2 2932 3272 0 413 162 0 0 chr12 16128083 16128151 -128154338 + AluJ/FRAM SINE Alu 231 298 -14 2460 63 0 13 chr12 16128151 16128453 -128154036 - AluY SINE Alu -13 298 1 2226 116 69 17 chr12 16129310 16129656 -128152833 - THE1B LTR MaLR 0 364 1 1675 216 27 16 chr12 16129848 16130218 -128152271 - MLT1A2 LTR MaLR 0 374 1 1828 342 68 40 chr12 16130346 16131487 -128151002 - ERVL LTR ERVL -381 5383 4104 2133 147 0 0 chr12 16131487 16131799 -128150690 + AluSx SINE Alu 1 312 0 1828 342 68 40 chr12 16131799 16132537 -128149952 - ERVL LTR ERVL -1660 4104 3388 951 357 32 42 chr12 16132718 16132803 -128149686 - ERVL LTR ERVL -2913 2851 2767 2084 156 23 59 chr12 16132803 16133246 -128149243 - MSTC LTR MaLR 0 428 2 951 357 32 42 chr12 16133246 16133948 -128148541 - ERVL LTR ERVL -2997 2767 2072 405 374 55 24 chr12 16133993 16134415 -128148074 - L2 LINE L2 -1177 2137 1703 279 0 0 0 chr12 16134858 16134889 -128147600 + (CA)n Simple_repeat Simple_repeat 1 31 0 285 287 74 8 chr12 16136322 16136444 -128146045 - MIR SINE MIR -14 248 119 272 214 265 31 chr12 16136706 16136804 -128145685 - L2 LINE L2 -1 3312 3192 1502 112 0 0 chr12 16137837 16138034 -128144455 - AluSx SINE Alu -115 197 1 316 264 132 25 chr12 16138170 16138291 -128144198 - L2 LINE L2 -1 3312 3179 821 276 0 10 chr12 16138351 16138554 -128143935 + MIR SINE MIR 28 228 -34 568 96 0 12 chr12 16139406 16139489 -128143000 + Alu SINE Alu 220 301 -11 1581 84 5 5 chr12 16139502 16139704 -128142785 - AluSx SINE Alu -105 207 6 274 359 51 18 chr12 16139711 16139928 -128142561 + L2 LINE L2 2754 2977 -337 458 264 23 58 chr12 16140102 16140276 -128142213 - L2 LINE L2 0 3313 3146 289 260 16 94 chr12 16140344 16140471 -128142018 - MLT1I LTR MaLR -4 405 289 25 0 0 0 chr12 16141257 16141282 -128141207 + AT_rich Low_complexity Low_complexity 1 25 0 2248 117 0 0 chr12 16141527 16141826 -128140663 + AluSc SINE Alu 1 299 -10 313 308 49 42 chr12 16142517 16142660 -128139829 + L2 LINE L2 2760 2903 -411 2281 93 0 0 chr12 16142720 16143022 -128139467 + AluSx SINE Alu 1 302 -10 204 402 12 0 chr12 16143253 16143335 -128139154 + L2 LINE L2 3189 3271 -42 2366 67 27 0 chr12 16143335 16143632 -128138857 + AluY SINE Alu 1 305 -6 348 300 130 20 chr12 16143712 16143912 -128138577 - L1ME LINE L1 -636 5485 5264 1650 189 71 14 chr12 16144231 16144585 -128137904 - MLT1A2 LTR MaLR 0 374 1 32 43 0 0 chr12 16145428 16145474 -128137015 + AT_rich Low_complexity Low_complexity 1 46 0 201 273 0 45 chr12 16145483 16145549 -128136940 - MIR SINE MIR -98 110 48 2135 99 3 0 chr12 16147832 16148147 -128134342 - AluSx SINE Alu 0 316 1 182 263 0 0 chr12 16148248 16148286 -128134203 + MIR SINE MIR 109 146 -62 249 359 51 0 chr12 16148300 16148417 -128134072 + L2 LINE L2 3171 3293 -20 30 27 0 0 chr12 16148481 16148518 -128133971 + AT_rich Low_complexity Low_complexity 1 37 0 2397 156 14 35 chr12 16148942 16149377 -128133112 - MSTA LTR MaLR -2 426 1 2101 218 51 22 chr12 16149625 16150074 -128132415 + MLT2B1 LTR ERVL 1 462 -58 2185 119 3 0 chr12 16152202 16152512 -128129977 - AluSx SINE Alu -1 311 1 1838 138 0 24 chr12 16152515 16152804 -128129685 - AluJb SINE Alu -17 295 14 1887 166 0 0 chr12 16152952 16153236 -128129253 + AluSx SINE Alu 1 284 -28 186 43 0 0 chr12 16153239 16153262 -128129227 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 278 255 0 0 chr12 16153710 16153761 -128128728 - MER5A DNA MER1_type -130 59 9 25 0 0 0 chr12 16154047 16154072 -128128417 + AT_rich Low_complexity Low_complexity 1 25 0 2503 57 0 3 chr12 16154806 16155104 -128127385 - AluY SINE Alu -14 297 1 276 355 89 10 chr12 16155191 16155394 -128127095 + L3 LINE CR1 1188 1406 -171 281 228 309 0 chr12 16155440 16155576 -128126913 + L2 LINE L2 3126 3303 -10 2520 64 0 0 chr12 16155741 16156038 -128126451 - AluY SINE Alu -14 297 1 255 233 211 0 chr12 16156601 16156691 -128125798 - Tigger5 DNA MER2_type 0 2323 2215 * 344 164 0 0 chr12 16156683 16156738 -128125751 - Tigger5 DNA MER2_type -2268 55 1 520 224 161 12 chr12 16156914 16157075 -128125414 + MER5A DNA MER1_type 4 188 -1 207 310 28 14 chr12 16157345 16157416 -128125073 + MER5C DNA MER1_type 3 74 -250 224 170 85 0 chr12 16157768 16157815 -128124674 + L2 LINE L2 3221 3271 -1 2451 69 0 0 chr12 16159285 16159591 -128122898 + AluY SINE Alu 1 306 -5 198 310 56 0 chr12 16159996 16160067 -128122422 + MIR SINE MIR 162 236 -26 720 264 89 17 chr12 16160111 16160346 -128122143 + MIR SINE MIR 1 252 -10 461 219 60 49 chr12 16160389 16160572 -128121917 - L1MC5 LINE L1 -49 7912 7728 216 218 36 0 chr12 16160786 16160841 -128121648 + GA-rich Low_complexity Low_complexity 2 58 0 475 237 224 0 chr12 16161248 16161400 -128121089 + MIR SINE MIR 76 261 -1 221 362 38 0 chr12 16162005 16162110 -128120379 - MIR SINE MIR -63 145 37 345 346 38 6 chr12 16162575 16162734 -128119755 + MIR3 SINE MIR 42 205 -3 21 0 0 0 chr12 16163622 16163643 -128118846 + AT_rich Low_complexity Low_complexity 1 21 0 291 327 123 89 chr12 16163864 16164280 -128118209 - L2 LINE L2 0 3272 2843 621 242 110 41 chr12 16164661 16164880 -128117609 - MIR SINE MIR -21 241 8 1197 317 103 38 chr12 16164888 16165924 -128116565 - L1M4 LINE L1 -1002 5144 4041 245 190 17 0 chr12 16166188 16166246 -128116243 - MER53 DNA DNA -3 186 128 25 31 0 0 chr12 16166312 16166344 -128116145 + AT_rich Low_complexity Low_complexity 1 32 0 302 247 82 75 chr12 16166581 16166727 -128115762 - L1MEd LINE L1 -4952 1167 1021 243 262 73 37 chr12 16166807 16166998 -128115491 - L1M4 LINE L1 -1786 4360 4163 320 300 17 25 chr12 16167117 16167237 -128115252 - HAL1 LINE L1 -1381 1126 1008 297 176 59 0 chr12 16167923 16167991 -128114498 + L1MC4 LINE L1 7971 8042 0 1065 270 65 39 chr12 16168035 16168420 -128114069 - MLT1J LTR MaLR -8 503 109 733 344 104 61 chr12 16168570 16169747 -128112742 - L2 LINE L2 -2 3270 2050 1538 115 56 4 chr12 16170005 16170275 -128112214 + L1MA8 LINE L1 6002 6285 -6 5779 120 11 16 chr12 16171408 16172399 -128110090 - L1PA13 LINE L1 -1 6162 5168 252 100 0 0 chr12 16172399 16172439 -128110050 + (TTG)n Simple_repeat Simple_repeat 3 42 0 5779 120 11 16 chr12 16172439 16172590 -128109899 - L1PA13 LINE L1 -995 5168 5018 2208 100 0 29 chr12 16172590 16172901 -128109588 - AluY SINE Alu -9 302 1 5779 120 11 16 chr12 16172901 16173328 -128109161 - L1PA13 LINE L1 -1145 5018 4601 434 260 8 0 chr12 16174181 16174304 -128108185 + L1MB3 LINE L1 5668 5791 -330 204 231 0 0 chr12 16175336 16175375 -128107114 - MER5C DNA MER1_type -3 321 283 2618 36 0 0 chr12 16175411 16175746 -128106743 + L1P LINE L1 2855 3189 -2957 264 202 53 32 chr12 16175758 16175852 -128106637 - MER5C DNA MER1_type -126 198 103 11206 166 32 27 chr12 16175853 16178928 -128103561 + L1PA16 LINE L1 169 2920 -3929 12028 207 27 16 chr12 16179864 16180005 -128102484 + L1PA16 LINE L1 2900 3038 -3831 726 182 0 8 chr12 16180005 16180137 -128102352 + FLAM_C SINE Alu 3 133 0 12028 207 27 16 chr12 16180137 16183931 -128098558 + L1PA16 LINE L1 3038 6869 0 1071 223 64 11 chr12 16184007 16184294 -128098195 + MLT1A1 LTR MaLR 24 360 -5 203 315 0 0 chr12 16184307 16184361 -128098128 - MER5C DNA MER1_type -270 54 1 239 243 57 0 chr12 16184539 16184609 -128097880 + L1MB3 LINE L1 5906 5979 -204 * 274 223 27 45 chr12 16184596 16184708 -128097781 + L1ME4a LINE L1 5998 6107 -14 21 0 0 0 chr12 16185097 16185118 -128097371 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr12 16185919 16185959 -128096530 + AT_rich Low_complexity Low_complexity 1 40 0 48 0 0 0 chr12 16186179 16186227 -128096262 + AT_rich Low_complexity Low_complexity 1 48 0 189 0 0 0 chr12 16187764 16187785 -128094704 + (A)n Simple_repeat Simple_repeat 1 21 0 3478 196 52 19 chr12 16187900 16188408 -128094081 + L1MA9 LINE L1 5444 5990 -322 2734 120 14 9 chr12 16188408 16188840 -128093649 - MER57B LTR ERV1 0 434 1 3478 196 52 19 chr12 16188840 16189135 -128093354 + L1MA9 LINE L1 5990 6274 -38 923 143 13 0 chr12 16189138 16189292 -128093197 + L1MD3 LINE L1 7826 7981 -14 210 290 0 81 chr12 16189336 16189398 -128093091 + MIR3 SINE MIR 144 200 -8 1705 194 3 0 chr12 16189916 16190205 -128092284 + AluJb SINE Alu 1 290 -22 8387 177 34 8 chr12 16190224 16192170 -128090319 + L1PBa LINE L1 2607 4603 -2259 952 140 0 0 chr12 16192574 16192710 -128089779 - AluSq/x SINE Alu -172 141 6 186 43 0 0 chr12 16192743 16192766 -128089723 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 6045 208 44 75 chr12 16192999 16195311 -128087178 - L1MB1 LINE L1 0 5992 3946 1000 62 8 0 chr12 16195311 16195440 -128087049 + L1PA7 LINE L1 6023 6152 -2 6045 208 44 75 chr12 16195440 16196489 -128086000 - L1MB1 LINE L1 -2046 3946 2866 1336 179 24 72 chr12 16196490 16196828 -128085661 + MLT2B3 LTR ERVL 236 554 0 4279 248 68 35 chr12 16196857 16199128 -128083361 - L1MB1 LINE L1 -3945 2025 2 385 243 0 0 chr12 16199682 16199756 -128082733 + MER5A DNA MER1_type 26 99 -90 189 301 48 24 chr12 16199685 16199768 -128082721 - MER5A DNA MER1_type -16 173 89 * 22 0 0 0 chr12 16199902 16199924 -128082565 + AT_rich Low_complexity Low_complexity 1 22 0 303 352 28 28 chr12 16200130 16200312 -128082177 + MIR3 SINE MIR 20 201 -7 2610 153 26 12 chr12 16200340 16200932 -128081557 + MER4E LTR ERV1 1 766 0 186 328 97 46 chr12 16200933 16200991 -128081498 + L2 LINE L2 2553 2607 -707 2354 89 7 0 chr12 16200991 16201294 -128081195 - AluSc SINE Alu -4 305 1 186 328 97 46 chr12 16201294 16201430 -128081059 + L2 LINE L2 2607 2757 -557 2066 123 3 7 chr12 16201559 16201851 -128080638 - AluSq SINE Alu -19 294 4 206 355 56 0 chr12 16202105 16202212 -128080277 + MIR SINE MIR 148 260 -2 197 336 52 43 chr12 16202705 16202821 -128079668 - L3 LINE CR1 -50 1527 1411 2053 102 22 41 chr12 16203771 16204086 -128078403 - AluSx SINE Alu -3 309 1 33 43 0 0 chr12 16204323 16204370 -128078119 + AT_rich Low_complexity Low_complexity 1 47 0 372 297 76 0 chr12 16205386 16205531 -128076958 - MIR SINE MIR -13 249 94 357 309 36 29 chr12 16206011 16206150 -128076339 - MIR SINE MIR -17 245 106 557 292 91 18 chr12 16206354 16206573 -128075916 + MIR SINE MIR 17 251 -11 541 261 83 22 chr12 16206601 16206781 -128075708 + L2 LINE L2 2185 2375 -939 234 62 0 0 chr12 16206833 16206865 -128075624 + (TG)n Simple_repeat Simple_repeat 2 33 0 313 275 9 37 chr12 16207711 16207820 -128074669 + L2 LINE L2 2708 2813 -501 184 290 151 54 chr12 16209328 16209514 -128072975 - MIR SINE MIR -56 206 3 358 287 99 39 chr12 16209663 16209844 -128072645 + MIR SINE MIR 21 212 -50 2931 6 0 0 chr12 16209916 16210234 -128072255 - AluYb8 SINE Alu 0 318 1 1372 163 0 5 chr12 16210882 16211103 -128071386 + AluJb SINE Alu 39 258 -54 219 225 0 0 chr12 16211348 16211388 -128071101 + (CAT)n Simple_repeat Simple_repeat 3 42 0 212 330 56 42 chr12 16211957 16212172 -128070317 + L2 LINE L2 2570 2787 -527 2172 101 0 10 chr12 16213242 16213538 -128068951 + AluSx SINE Alu 12 304 -8 390 320 34 29 chr12 16213632 16213807 -128068682 - MIR SINE MIR -72 190 15 325 266 169 0 chr12 16213795 16213919 -128068570 + MIR SINE MIR 86 230 -32 * 263 326 171 8 chr12 16214196 16214325 -128068164 + MIR3 SINE MIR 10 159 -49 2652 47 0 3 chr12 16216106 16216450 -128066039 - L1PA2 LINE L1 -787 5359 5017 7053 15 0 1 chr12 16216450 16217259 -128065230 + L1PA2 LINE L1 5344 6151 -4 27 0 0 26 chr12 16218409 16218423 -128064066 + AT_rich Low_complexity Low_complexity 1 14 -23 2470 58 0 0 chr12 16218423 16218718 -128063771 - AluY SINE Alu -16 295 1 27 0 0 26 chr12 16218718 16218741 -128063748 + AT_rich Low_complexity Low_complexity 14 37 0 1644 248 118 71 chr12 16219867 16220469 -128062020 - L1ME LINE L1 -5199 871 218 462 65 0 0 chr12 16220469 16220531 -128061958 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 1644 248 118 71 chr12 16220531 16220755 -128061734 - L1ME LINE L1 -5852 218 6 265 304 49 20 chr12 16221311 16221413 -128061076 - L2 LINE L2 -27 3286 3182 3968 135 39 43 chr12 16221638 16222409 -128060080 + L1MA5 LINE L1 5531 6298 -2 621 225 7 40 chr12 16222618 16222769 -128059720 + MIR SINE MIR 81 226 -36 194 296 19 0 chr12 16222808 16222862 -128059627 - MIR SINE MIR -61 147 93 2290 243 67 12 chr12 16225523 16226256 -128056233 - L1MCc LINE L1 -3212 3729 2957 616 156 69 31 chr12 16226259 16226419 -128056070 - MER3 DNA MER1_type 0 2585 2420 397 231 0 0 chr12 16226467 16226545 -128055944 - MER3 DNA MER1_type -91 118 41 37 39 0 0 chr12 16226546 16226597 -128055892 + AT_rich Low_complexity Low_complexity 1 51 0 353 271 85 34 chr12 16226624 16226742 -128055747 - L1MCc LINE L1 -5190 1233 1110 1270 281 116 63 chr12 16226748 16227462 -128055027 - L1MCc LINE L1 -5345 1078 327 364 172 25 42 chr12 16227462 16227618 -128054871 + MER3 DNA MER1_type 1 208 -1 1064 208 48 24 chr12 16227634 16227927 -128054562 - L1MCc LINE L1 -6105 318 19 250 284 9 64 chr12 16228084 16228193 -128054296 + MIR3 SINE MIR 85 187 -21 186 298 122 38 chr12 16228814 16228945 -128053544 - L2 LINE L2 -18 3295 3154 3215 108 13 5 chr12 16228953 16229511 -128052978 - MER41B LTR ERV1 0 635 1 1474 211 37 12 chr12 16230021 16230348 -128052141 - MER58B DNA MER1_type -1 340 6 241 340 0 10 chr12 16230663 16230760 -128051729 - L2 LINE L2 -657 2657 2562 297 0 0 0 chr12 16231675 16231708 -128050781 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 562 205 0 39 chr12 16232183 16232310 -128050179 + FLAM_A SINE Alu 18 139 -3 45 34 0 0 chr12 16232327 16232386 -128050103 + AT_rich Low_complexity Low_complexity 1 59 0 364 278 32 94 chr12 16232592 16233131 -128049358 + L1MEc LINE L1 1233 1687 -839 498 276 78 6 chr12 16233191 16233447 -128049042 + L1ME LINE L1 5283 5556 -606 190 225 0 0 chr12 16235118 16235158 -128047331 + L2 LINE L2 3269 3308 -5 1325 206 63 69 chr12 16235304 16235808 -128046681 - LTR24B LTR ERV1 -6 570 70 2079 104 21 0 chr12 16235873 16236161 -128046328 - AluSp SINE Alu 0 313 20 2055 104 0 11 chr12 16238011 16238298 -128044191 + AluSx SINE Alu 1 284 -28 234 0 0 0 chr12 16238298 16238324 -128044165 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 26 0 0 0 chr12 16238520 16238546 -128043943 + AT_rich Low_complexity Low_complexity 1 26 0 627 94 0 0 chr12 16239779 16239875 -128042614 + (TGGA)n Simple_repeat Simple_repeat 2 97 0 209 277 18 98 chr12 16239942 16240054 -128042435 + L3 LINE CR1 1472 1574 -3 2235 109 0 7 chr12 16240378 16240681 -128041808 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr12 16243138 16243159 -128039330 + AT_rich Low_complexity Low_complexity 1 21 0 282 240 10 52 chr12 16245668 16245764 -128036725 - MIR SINE MIR -85 177 86 255 191 0 0 chr12 16245981 16246028 -128036461 - MIR SINE MIR -59 203 157 520 256 95 42 chr12 16246042 16246154 -128036335 + MIR3 SINE MIR 23 148 -60 1946 143 55 27 chr12 16246154 16246519 -128035970 - THE1C LTR MaLR 0 375 1 520 256 95 42 chr12 16246519 16246574 -128035915 + MIR3 SINE MIR 148 199 -9 339 320 13 11 chr12 16246577 16246709 -128035780 - MIR SINE MIR -65 143 15 490 234 234 7 chr12 16246726 16246867 -128035622 + MIR SINE MIR 16 188 -74 2056 114 11 0 chr12 16246869 16247191 -128035298 + AluSx SINE Alu 1 325 0 278 154 0 77 chr12 16247625 16247690 -128034799 - MIR SINE MIR 0 262 203 361 348 141 0 chr12 16248728 16248863 -128033626 - L2 LINE L2 0 3272 3119 2368 77 34 0 chr12 16249153 16249450 -128033039 + AluSx SINE Alu 1 307 -5 188 255 20 0 chr12 16250559 16250610 -128031879 - MIR3 SINE MIR -18 190 139 967 148 0 0 chr12 16250626 16250761 -128031728 + FLAM_C SINE Alu 4 138 -5 2109 98 0 24 chr12 16251291 16251602 -128030887 - AluSc SINE Alu 0 304 1 2177 121 0 22 chr12 16251838 16252153 -128030336 - AluSx SINE Alu -4 308 1 25 0 0 0 chr12 16252362 16252387 -128030102 + AT_rich Low_complexity Low_complexity 1 25 0 1893 169 0 25 chr12 16252450 16252770 -128029719 + AluSx SINE Alu 1 312 0 1251 51 17 6 chr12 16252780 16252802 -128029687 + (GAAA)n Simple_repeat Simple_repeat 1 200 0 1251 51 17 6 chr12 16252802 16252978 -128029511 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 383 303 38 43 chr12 16253545 16253730 -128028759 - MIR SINE MIR -78 184 1 2317 109 0 3 chr12 16253907 16254219 -128028270 + AluSx SINE Alu 1 311 -1 182 261 22 0 chr12 16254295 16254319 -128028170 + L2 LINE L2 3191 3215 -57 384 297 148 0 chr12 16254319 16254474 -128028015 + MIR3 SINE MIR 2 179 -29 235 0 28 28 chr12 16254474 16254510 -128027979 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1989 122 7 10 chr12 16254513 16254801 -128027688 - AluSx SINE Alu -23 289 3 590 226 17 90 chr12 16255609 16255717 -128026772 + FRAM SINE Alu 1 4294967240 -400 2303 110 10 0 chr12 16255717 16256025 -128026464 - AluY SINE Alu 0 311 1 590 226 17 90 chr12 16256025 16256273 -128026216 + FRAM SINE Alu -57 208 0 456 165 26 9 chr12 16256278 16256393 -128026096 + GA-rich Low_complexity Low_complexity 2 118 0 2113 138 48 20 chr12 16256811 16257165 -128025324 - THE1B LTR MaLR 0 364 1 11258 87 17 21 chr12 16257165 16258752 -128023737 - THE1B-int LTR MaLR 0 1580 1 2204 122 48 17 chr12 16258752 16259105 -128023384 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr12 16259733 16259761 -128022728 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 16259837 16259866 -128022623 + AT_rich Low_complexity Low_complexity 1 29 0 292 306 96 41 chr12 16260483 16260702 -128021787 + MIR SINE MIR 18 248 -14 189 269 64 26 chr12 16261317 16261395 -128021094 + MIR SINE MIR 60 140 -122 392 265 41 27 chr12 16261472 16261619 -128020870 - MER110 LTR ERV1 -87 404 256 220 211 0 0 chr12 16261805 16261857 -128020632 + MIR SINE MIR 117 168 -94 1537 40 25 5 chr12 16261987 16262186 -128020303 - L1PA8 LINE L1 0 6172 5970 23 0 0 0 chr12 16263200 16263223 -128019266 + AT_rich Low_complexity Low_complexity 1 23 0 1833 188 0 0 chr12 16263231 16263539 -128018950 + AluJo SINE Alu 1 308 -4 1657 154 15 7 chr12 16263543 16263816 -128018673 - AluJo SINE Alu -19 293 19 22 0 0 0 chr12 16263823 16263845 -128018644 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr12 16263896 16263916 -128018573 + (A)n Simple_repeat Simple_repeat 1 20 0 276 237 17 0 chr12 16263946 16264005 -128018484 - L2 LINE L2 -4 3268 3209 325 292 25 50 chr12 16264767 16264887 -128017602 - L2 LINE L2 -7 3306 3190 387 284 120 67 chr12 16265138 16265480 -128017009 - MLT1J LTR MaLR -43 468 109 186 222 22 0 chr12 16266246 16266291 -128016198 - MIR3 SINE MIR -9 199 154 499 232 73 16 chr12 16266292 16266538 -128015951 - MER20B DNA MER1_type 0 783 524 6531 195 56 22 chr12 16266804 16267973 -128014516 + L1M3f LINE L1 17 1146 -5182 2224 77 10 33 chr12 16267973 16268273 -128014216 + AluY SINE Alu 1 293 -18 6531 195 56 22 chr12 16268273 16269110 -128013379 + L1M3f LINE L1 1146 1954 -4374 1366 161 79 69 chr12 16269110 16269414 -128013075 + AluJo SINE Alu 1 307 -5 6531 195 56 22 chr12 16269414 16271099 -128011390 + L1M3f LINE L1 1954 3824 -2504 31 26 0 0 chr12 16271969 16272007 -128010482 + AT_rich Low_complexity Low_complexity 1 38 0 489 288 44 34 chr12 16272137 16272342 -128010147 - MER20B DNA MER1_type -573 210 4 245 356 62 25 chr12 16272451 16272611 -128009878 - L3 LINE CR1 -203 1374 1209 191 231 39 19 chr12 16273214 16273266 -128009223 + L2 LINE L2 3257 3309 -4 209 194 0 0 chr12 16274023 16274059 -128008430 + A-rich Low_complexity Low_complexity 3 38 0 209 307 14 100 chr12 16274116 16274256 -128008233 - L2 LINE L2 -4 3309 3182 1197 293 108 72 chr12 16274330 16275160 -128007329 - L2 LINE L2 -407 2907 2048 216 0 0 0 chr12 16275160 16275184 -128007305 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 257 333 81 0 chr12 16275260 16275347 -128007142 - MIR3 SINE MIR -8 200 107 1358 265 83 27 chr12 16275800 16276438 -128006051 - L2 LINE L2 0 3313 2627 225 167 0 100 chr12 16276537 16276597 -128005892 - MER94 DNA DNA -80 54 1 2247 303 131 23 chr12 16276620 16277702 -128004787 - L2 LINE L2 -703 2611 1413 2193 84 28 0 chr12 16277975 16278261 -128004228 - AluSg SINE Alu -16 294 1 471 340 38 0 chr12 16278546 16278705 -128003784 + MIR3 SINE MIR 31 195 -13 761 238 0 0 chr12 16278883 16279051 -128003438 + L1PB4 LINE L1 5982 6149 -7 2290 118 0 3 chr12 16279217 16279530 -128002959 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 16279583 16279604 -128002885 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 16280026 16280047 -128002442 + AT_rich Low_complexity Low_complexity 1 21 0 1850 166 47 36 chr12 16281164 16281470 -128001019 - MLT1B LTR MaLR 0 390 78 2151 117 3 0 chr12 16281470 16281760 -128000729 + AluSx SINE Alu 3 293 -19 1850 166 47 36 chr12 16281760 16281839 -128000650 - MLT1B LTR MaLR -312 78 1 1220 119 92 37 chr12 16281970 16282188 -128000301 + MER30 DNA MER1_type 1 230 0 1523 161 29 6 chr12 16282317 16282628 -127999861 - MER33 DNA MER1_type 0 324 7 2325 77 0 39 chr12 16283954 16284266 -127998223 + AluSc SINE Alu 1 300 -9 1727 147 68 4 chr12 16285490 16285769 -127996720 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr12 16286270 16286291 -127996198 + AT_rich Low_complexity Low_complexity 1 21 0 464 266 73 49 chr12 16287871 16288157 -127994332 + L1MC4a LINE L1 5337 5629 -2179 208 295 16 0 chr12 16288180 16288241 -127994248 + (TA)n Simple_repeat Simple_repeat 2 63 0 354 183 0 0 chr12 16288241 16288312 -127994177 + (TG)n Simple_repeat Simple_repeat 2 72 0 589 290 21 21 chr12 16288318 16288564 -127993925 + L1MC4a LINE L1 5681 5826 -352 22 0 0 0 chr12 16288767 16288789 -127993700 + AT_rich Low_complexity Low_complexity 1 22 0 414 285 81 12 chr12 16289058 16289230 -127993259 + MIR SINE MIR 31 214 -48 184 115 0 58 chr12 16289642 16289694 -127992795 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 2511 144 14 23 chr12 16289777 16290215 -127992274 - Tigger2a DNA MER2_type 0 434 1 304 261 86 39 chr12 16290265 16290408 -127992081 - MIR3 SINE MIR -68 140 4 2298 125 0 0 chr12 16292534 16292838 -127989651 - AluSx SINE Alu -8 304 1 2053 271 74 28 chr12 16292927 16293673 -127988816 - L2 LINE L2 -67 3246 2456 1939 91 76 0 chr12 16293673 16293936 -127988553 + AluSp SINE Alu 23 305 -8 2053 271 74 28 chr12 16293936 16294056 -127988433 - L2 LINE L2 -857 2456 2343 304 105 0 35 chr12 16294056 16294113 -127988376 - MLT2A1 LTR ERVL 0 453 399 214 149 21 21 chr12 16294121 16294168 -127988321 + (TA)n Simple_repeat Simple_repeat 2 48 0 2795 68 25 8 chr12 16294187 16294584 -127987905 - MLT2A1 LTR ERVL -40 404 1 872 254 88 58 chr12 16294584 16294704 -127987785 - L2 LINE L2 -967 2347 2232 2141 90 21 14 chr12 16294704 16294992 -127987497 + AluSq SINE Alu 7 296 -17 872 254 88 58 chr12 16294992 16295233 -127987256 - L2 LINE L2 -1082 2232 1975 1013 228 135 20 chr12 16295456 16295908 -127986581 - Charlie4a DNA MER1_type -4 504 1 23 0 0 0 chr12 16296556 16296579 -127985910 + AT_rich Low_complexity Low_complexity 1 23 0 2274 96 36 0 chr12 16296767 16297068 -127985421 - AluSx SINE Alu 0 312 1 23 0 0 0 chr12 16297637 16297660 -127984829 + AT_rich Low_complexity Low_complexity 1 23 0 1824 150 13 19 chr12 16297660 16297967 -127984522 - AluJb SINE Alu -2 310 6 25 31 0 0 chr12 16299372 16299404 -127983085 + AT_rich Low_complexity Low_complexity 1 32 0 317 305 150 20 chr12 16300453 16300653 -127981836 - MIR SINE MIR -16 246 21 190 344 0 0 chr12 16300923 16300984 -127981505 + L3b LINE CR1 1108 1168 -415 243 205 102 102 chr12 16301055 16301182 -127981307 + L3b LINE CR1 1286 1412 -171 210 223 0 117 chr12 16304146 16304240 -127978249 - L2 LINE L2 -1 3271 3189 26 0 0 0 chr12 16304364 16304390 -127978099 + AT_rich Low_complexity Low_complexity 1 26 0 187 54 54 0 chr12 16306237 16306274 -127976215 + T-rich Low_complexity Low_complexity 2 40 0 2118 128 0 0 chr12 16306277 16306559 -127975930 - AluSx SINE Alu -30 282 1 327 306 11 38 chr12 16307099 16307282 -127975207 + CT-rich Low_complexity Low_complexity 3 180 0 343 346 60 16 chr12 16307491 16307676 -127974813 + MIR SINE MIR 13 205 -57 2116 125 0 0 chr12 16307886 16308202 -127974287 + AluSx SINE Alu 1 316 0 226 336 121 0 chr12 16308687 16308811 -127973678 - MIR SINE MIR -57 151 36 277 191 0 44 chr12 16310710 16310778 -127971711 - MLT1K LTR MaLR -13 575 511 2061 114 7 0 chr12 16311020 16311324 -127971165 - AluSg SINE Alu 0 306 1 228 214 0 0 chr12 16312480 16312522 -127969967 + MIR3 SINE MIR 119 160 -48 499 273 22 49 chr12 16312522 16312705 -127969784 + MER20B DNA MER1_type 1 178 -605 2057 166 16 51 chr12 16312777 16313206 -127969283 - MLT2D LTR ERVL 0 414 1 247 203 0 47 chr12 16314413 16314477 -127968012 + MLT1K LTR MaLR 511 571 -17 743 198 249 20 chr12 16314679 16314820 -127967669 + MLT1A2 LTR MaLR 2 109 -256 1902 130 61 21 chr12 16314820 16315150 -127967339 - MER61A LTR ERV1 0 343 1 743 198 249 20 chr12 16315150 16315301 -127967188 + MLT1A2 LTR MaLR 109 361 -4 790 222 68 17 chr12 16315392 16315777 -127966712 - MLT1C LTR MaLR -1 466 1 238 329 43 43 chr12 16316448 16316588 -127965901 - MIR SINE MIR -65 197 58 301 243 54 27 chr12 16317521 16317595 -127964894 - MER91C DNA MER1_type -21 119 44 2211 133 3 13 chr12 16320649 16321033 -127961456 - MER65C LTR ERV1 -2 459 80 1153 56 0 7 chr12 16321033 16321176 -127961313 - AluSg/x SINE Alu -6 306 165 394 236 34 0 chr12 16321176 16321265 -127961224 - MER65C LTR ERV1 -369 92 1 3240 106 47 4 chr12 16321585 16322075 -127960414 - MER9 LTR ERVK 0 511 1 185 95 0 48 chr12 16322442 16322484 -127960005 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1317 194 56 22 chr12 16322840 16322940 -127959549 + MER58B DNA MER1_type 10 105 -2315 1641 211 10 0 chr12 16322940 16323218 -127959271 + AluSp SINE Alu 3 286 -27 180 0 0 0 chr12 16323218 16323238 -127959251 + (CA)n Simple_repeat Simple_repeat 1 20 0 1641 211 10 0 chr12 16323238 16323258 -127959231 + AluSp SINE Alu 286 304 -9 1317 194 56 22 chr12 16323258 16323477 -127959012 + MER58B DNA MER1_type 105 340 -1 190 319 31 105 chr12 16323737 16323928 -127958561 + L2 LINE L2 3009 3185 -87 269 221 93 0 chr12 16325800 16325886 -127956603 - MIR SINE MIR -59 203 110 869 271 86 46 chr12 16325886 16326318 -127956171 - LTR16A1 LTR ERVL -8 449 1 224 292 46 0 chr12 16326322 16326387 -127956102 - MIR SINE MIR -155 107 40 475 309 48 24 chr12 16326973 16327141 -127955348 - MIR SINE MIR -90 172 1 2217 117 0 19 chr12 16328832 16329149 -127953340 + AluSx SINE Alu 1 311 -1 2248 103 0 7 chr12 16330825 16331126 -127951363 + AluSx SINE Alu 1 299 -13 1719 72 0 0 chr12 16331403 16331610 -127950879 + AluSc SINE Alu 83 289 -20 43 20 0 0 chr12 16331614 16331664 -127950825 + AT_rich Low_complexity Low_complexity 1 50 0 210 253 172 10 chr12 16332365 16332464 -127950025 + MIR SINE MIR 38 152 -110 327 301 73 70 chr12 16333119 16333461 -127949028 - L1ME4a LINE L1 -63 6058 5716 713 72 0 0 chr12 16334147 16334244 -127948245 + L1MA9 LINE L1 6063 6159 -153 330 153 0 0 chr12 16334255 16334314 -127948175 + (TA)n Simple_repeat Simple_repeat 1 59 0 748 112 60 22 chr12 16334314 16334448 -127948041 + L1MA9 LINE L1 6174 6312 0 2221 102 0 29 chr12 16338394 16338707 -127943782 - AluSx SINE Alu -8 304 1 258 341 18 43 chr12 16339569 16339733 -127942756 + L3 LINE CR1 1066 1225 -352 180 318 0 16 chr12 16339792 16339855 -127942634 - L2 LINE L2 0 3272 3211 208 292 35 80 chr12 16340532 16340645 -127941844 - MIR SINE MIR -115 147 40 251 345 106 0 chr12 16340819 16340932 -127941557 - L2 LINE L2 -18 3295 3171 511 299 96 0 chr12 16341530 16341697 -127940792 + MLT1J2 LTR MaLR 266 448 -2 1872 162 82 12 chr12 16342583 16342923 -127939566 - MLT1A1 LTR MaLR -1 364 1 377 246 136 0 chr12 16343572 16343682 -127938807 + MIR SINE MIR 102 226 -36 294 314 159 23 chr12 16343694 16343914 -127938575 + MIR SINE MIR 1 250 -12 2077 102 7 36 chr12 16344164 16344468 -127938021 + AluSx SINE Alu 1 295 -17 456 74 0 0 chr12 16344870 16344924 -127937565 - Alu SINE Alu -29 283 230 263 291 116 0 chr12 16345654 16345740 -127936749 + MIR SINE MIR 49 144 -118 324 120 0 0 chr12 16345904 16345954 -127936535 + (TG)n Simple_repeat Simple_repeat 1 50 0 913 280 96 43 chr12 16348189 16349094 -127933395 + L1ME LINE L1 531 1466 -4614 3133 247 32 29 chr12 16349097 16349293 -127933196 + L1MEc LINE L1 38 232 -6164 776 143 118 0 chr12 16349293 16349412 -127933077 + FLAM_C SINE Alu 1 133 0 3133 247 32 29 chr12 16349412 16350109 -127932380 + L1MEc LINE L1 232 934 -5462 815 174 35 23 chr12 16350122 16350294 -127932195 - L1MB4 LINE L1 0 6180 6007 1566 253 65 17 chr12 16350295 16350754 -127931735 - L1M4 LINE L1 -883 5263 4783 * 7977 173 33 29 chr12 16350749 16351263 -127931226 - L1PA16 LINE L1 0 6166 5656 1769 96 100 4 chr12 16351263 16351513 -127930976 - AluSp SINE Alu -39 274 1 7977 173 33 29 chr12 16351513 16351846 -127930643 - L1PA16 LINE L1 -510 5656 5326 2383 103 3 0 chr12 16351846 16352158 -127930331 - AluSp SINE Alu 0 313 1 7977 173 33 29 chr12 16352158 16353908 -127928581 - L1PA16 LINE L1 -840 5326 3541 607 174 78 30 chr12 16454215 16454382 -127828107 + MER5B DNA MER1_type 2 176 -2 324 102 0 0 chr12 16455777 16455826 -127826663 + (CA)n Simple_repeat Simple_repeat 1 49 0 2015 107 0 0 chr12 16456114 16456376 -127826113 - AluSc SINE Alu -8 301 40 670 242 38 16 chr12 16456491 16456677 -127825812 - MER91B DNA MER1_type 0 190 1 224 119 0 24 chr12 16456797 16456839 -127825650 + (TA)n Simple_repeat Simple_repeat 1 41 0 188 337 23 0 chr12 16457253 16457339 -127825150 + MIR SINE MIR 54 141 -67 247 297 55 0 chr12 16458522 16458613 -127823876 - MLT1H LTR MaLR 0 549 454 342 283 17 8 chr12 16458665 16458785 -127823704 - LTR28 LTR ERV1 0 1020 900 1079 211 201 59 chr12 16458825 16459522 -127822967 - LTR1B LTR ERV1 -37 983 19 254 214 18 0 chr12 16459516 16459572 -127822917 - LTR28 LTR ERV1 -963 57 1 * 992 269 70 30 chr12 16459585 16459916 -127822573 - MLT1H LTR MaLR -198 351 8 458 287 111 55 chr12 16461259 16461663 -127820826 + MLT1H LTR MaLR 123 549 0 195 42 0 0 chr12 16461799 16461823 -127820666 + (CAATT)n Simple_repeat Simple_repeat 5 28 0 26 0 0 0 chr12 16462290 16462316 -127820173 + AT_rich Low_complexity Low_complexity 1 26 0 838 129 50 14 chr12 16463051 16463229 -127819260 - AluJb SINE Alu 0 350 168 22 80 0 0 chr12 16464760 16464810 -127817679 + AT_rich Low_complexity Low_complexity 1 50 0 183 42 0 0 chr12 16466442 16466466 -127816023 + (A)n Simple_repeat Simple_repeat 1 24 0 1335 266 104 34 chr12 16466801 16467130 -127815359 + HAL1 LINE L1 811 1116 -1391 192 77 0 0 chr12 16467130 16467156 -127815333 + (CA)n Simple_repeat Simple_repeat 2 27 0 1335 266 104 34 chr12 16467156 16467669 -127814820 + HAL1 LINE L1 1116 1712 -795 1495 141 19 48 chr12 16468000 16468269 -127814220 + MER1B DNA MER1_type 79 339 0 184 111 44 0 chr12 16468392 16468437 -127814052 + (TA)n Simple_repeat Simple_repeat 2 48 0 380 290 77 73 chr12 16468794 16469053 -127813436 + HAL1 LINE L1 2245 2504 -3 304 274 27 41 chr12 16469187 16469333 -127813156 + MIR SINE MIR 119 262 0 2393 199 20 61 chr12 16469514 16470169 -127812320 - L1ME1 LINE L1 -5 6161 5534 1489 195 27 7 chr12 16470746 16471038 -127811451 - AluJo SINE Alu -14 298 1 586 322 89 0 chr12 16471712 16471926 -127810563 - MIR SINE MIR -8 254 22 2014 168 37 0 chr12 16472137 16472489 -127810000 + MLT1A1 LTR MaLR 1 365 0 381 294 42 8 chr12 16475347 16475466 -127807023 - L2 LINE L2 -1 3271 3149 2396 197 4 17 chr12 16475676 16476193 -127806296 + L1MB7 LINE L1 5540 6049 -135 2376 191 104 55 chr12 16476193 16476953 -127805536 - LTR1B LTR ERV1 0 826 30 575 155 8 39 chr12 16476972 16477101 -127805388 + L1MB7 LINE L1 6052 6176 -8 2333 91 0 3 chr12 16477270 16477567 -127804922 + AluSq SINE Alu 1 296 -17 492 244 360 0 chr12 16478066 16478238 -127804251 + MIR SINE MIR 19 252 -10 204 216 0 0 chr12 16478269 16478320 -127804169 + (TAG)n Simple_repeat Simple_repeat 1 51 0 1854 118 4 0 chr12 16478533 16478779 -127803710 + AluSx SINE Alu 2 248 -64 22 0 0 0 chr12 16478779 16478801 -127803688 + AT_rich Low_complexity Low_complexity 1 22 0 243 175 70 0 chr12 16479064 16479121 -127803368 + LTR58 LTR ERV1 359 419 -260 226 293 64 42 chr12 16479639 16479844 -127802645 - MIR SINE MIR -37 225 46 255 322 34 62 chr12 16480144 16480290 -127802199 - L2 LINE L2 -1 3312 3171 253 327 26 18 chr12 16482263 16482376 -127800113 + MIR SINE MIR 26 139 -69 212 360 112 12 chr12 16485372 16485533 -127796956 + L2 LINE L2 3092 3268 -4 623 296 128 32 chr12 16488014 16488419 -127794070 + L2 LINE L2 2851 3294 -19 35159 36 1 1 chr12 16488877 16494377 -127788112 + L1PA2 LINE L1 523 6150 -5 1553 219 175 16 chr12 16494377 16494925 -127787564 - L1MEc LINE L1 -3123 3417 2783 462 235 62 8 chr12 16494924 16495088 -127787401 - L1MEc LINE L1 -5044 1496 1320 * 2023 180 171 35 chr12 16495091 16495663 -127786826 - L1MA9 LINE L1 -38 6274 5625 870 235 56 42 chr12 16495668 16496089 -127786400 - L1MEc LINE L1 -5168 1362 986 292 316 39 96 chr12 16496340 16496568 -127785921 - L1MEc LINE L1 -6017 704 499 2345 100 0 3 chr12 16496568 16496878 -127785611 + AluSg SINE Alu 1 309 -1 292 316 39 96 chr12 16496878 16496981 -127785508 - L1MEc LINE L1 -6222 499 392 263 91 0 23 chr12 16497829 16497873 -127784616 + (GGA)n Simple_repeat Simple_repeat 3 45 0 237 341 12 0 chr12 16497895 16497977 -127784512 - MIR SINE MIR -30 232 150 248 257 14 0 chr12 16498315 16498385 -127784104 + MLT1J1 LTR MaLR 374 444 -2 240 98 122 0 chr12 16498408 16498449 -127784040 - MIR SINE MIR -108 154 109 223 74 0 0 chr12 16500650 16500677 -127781812 + (A)n Simple_repeat Simple_repeat 1 27 0 207 327 188 0 chr12 16500680 16500781 -127781708 - MIR3 SINE MIR -25 183 64 1307 221 62 15 chr12 16501111 16501436 -127781053 - MER2 DNA MER2_type -4 340 1 241 293 13 0 chr12 16501547 16501622 -127780867 - MIR SINE MIR 0 262 187 21 0 0 0 chr12 16503187 16503208 -127779281 + AT_rich Low_complexity Low_complexity 1 21 0 187 354 0 15 chr12 16503683 16503748 -127778741 + L3 LINE CR1 1514 1577 0 804 244 44 36 chr12 16505639 16505889 -127776600 + MIR SINE MIR 11 262 0 531 284 115 0 chr12 16506035 16506243 -127776246 - MIR SINE MIR -2 260 29 190 222 89 0 chr12 16507285 16507330 -127775159 - L2 LINE L2 0 3313 3265 417 348 88 48 chr12 16507790 16508144 -127774345 + L2 LINE L2 2886 3253 -19 2322 179 58 52 chr12 16508297 16508801 -127773688 + MLT2B2 LTR ERVL 1 507 -8 253 229 49 0 chr12 16511077 16511138 -127771351 - L2 LINE L2 0 3272 3209 781 285 29 42 chr12 16511688 16511997 -127770492 - MLT1H LTR MaLR -178 371 67 22 56 0 0 chr12 16512146 16512182 -127770307 + GC_rich Low_complexity Low_complexity 1 36 0 2202 110 36 36 chr12 16512491 16512855 -127769634 + THE1B LTR MaLR 1 364 0 211 343 10 20 chr12 16514180 16514282 -127768207 - L2 LINE L2 -306 2966 2866 341 306 150 38 chr12 16514530 16514929 -127767560 - L2 LINE L2 -802 2512 2069 1987 151 0 3 chr12 16515334 16515633 -127766856 + AluJb SINE Alu 1 298 -14 208 155 86 35 chr12 16517130 16517188 -127765301 + MIR SINE MIR 112 172 -90 246 309 103 0 chr12 16518048 16518145 -127764344 + L2 LINE L2 3163 3269 -3 193 173 24 0 chr12 16518245 16518281 -127764208 - MIR SINE MIR -64 149 94 201 200 25 0 chr12 16518892 16518932 -127763557 - L2 LINE L2 -83 3230 3190 21 0 0 0 chr12 16519400 16519421 -127763068 + AT_rich Low_complexity Low_complexity 1 21 0 206 213 0 0 chr12 16520412 16520459 -127762030 + A-rich Low_complexity Low_complexity 3 49 0 186 264 0 0 chr12 16522430 16522483 -127760006 - MIR SINE MIR -137 125 73 314 271 187 0 chr12 16522504 16522659 -127759830 + L2 LINE L2 3119 3302 -11 402 312 89 47 chr12 16523377 16523758 -127758731 + L2 LINE L2 2877 3273 -40 199 234 78 16 chr12 16523817 16523881 -127758608 + L2 LINE L2 3241 3308 -5 366 184 0 0 chr12 16524312 16524388 -127758101 + (TA)n Simple_repeat Simple_repeat 2 77 0 3511 134 18 3 chr12 16524388 16525105 -127757384 - L1P5 LINE L1 -359 5792 5068 3018 188 5 6 chr12 16525123 16525768 -127756721 + L1P5 LINE L1 4406 5049 -1097 241 317 297 0 chr12 16526261 16526362 -127756127 + L2 LINE L2 3138 3268 -4 275 302 88 50 chr12 16527145 16527304 -127755185 - L2 LINE L2 0 3313 3149 2014 176 45 50 chr12 16527890 16527938 -127754551 - MSTB LTR MaLR 0 426 379 1611 152 64 72 chr12 16527938 16528313 -127754176 + THE1C LTR MaLR 1 372 -3 2014 176 45 50 chr12 16528313 16528684 -127753805 - MSTB LTR MaLR -47 379 9 622 151 40 7 chr12 16528840 16528992 -127753497 + GA-rich Low_complexity Low_complexity 3 159 0 287 103 0 0 chr12 16528996 16529035 -127753454 + (GAA)n Simple_repeat Simple_repeat 2 40 0 539 151 41 29 chr12 16529035 16529207 -127753282 + GA-rich Low_complexity Low_complexity 4 177 0 633 210 43 27 chr12 16529502 16529688 -127752801 - MER53 DNA DNA 0 189 1 225 239 159 74 chr12 16530636 16530799 -127751690 - L3b LINE CR1 -284 1299 1123 239 333 23 0 chr12 16530924 16531011 -127751478 + MIR SINE MIR 60 148 -114 201 74 0 0 chr12 16531392 16531419 -127751070 + (A)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr12 16531458 16531486 -127751003 + AT_rich Low_complexity Low_complexity 1 28 0 2268 102 0 7 chr12 16531795 16532098 -127750391 - AluSx SINE Alu -11 301 1 225 0 0 0 chr12 16532132 16532157 -127750332 + (A)n Simple_repeat Simple_repeat 1 25 0 1569 231 61 16 chr12 16533684 16534125 -127748364 + MLT1C LTR MaLR 7 467 0 216 420 23 0 chr12 16537525 16537613 -127744876 - L2 LINE L2 -54 3218 3129 190 186 0 34 chr12 16538316 16538375 -127744114 + GA-rich Low_complexity Low_complexity 4 60 0 432 301 0 13 chr12 16539086 16539239 -127743250 - AluSx SINE Alu -159 153 3 1898 63 0 0 chr12 16539289 16539528 -127742961 - L1PA5 LINE L1 -11 6143 5905 219 257 129 0 chr12 16540976 16541046 -127741443 + L2 LINE L2 3230 3308 -5 308 254 85 46 chr12 16541522 16541652 -127740837 + L2 LINE L2 3178 3312 -1 1652 144 7 3 chr12 16542867 16543152 -127739337 + L1MA4A LINE L1 6018 6303 0 209 281 35 0 chr12 16543209 16543266 -127739223 - L2 LINE L2 -246 3026 2968 231 303 13 33 chr12 16543561 16543713 -127738776 + CT-rich Low_complexity Low_complexity 1 149 0 2082 98 0 32 chr12 16544327 16544612 -127737877 - AluSx SINE Alu -1 311 36 1725 146 62 46 chr12 16544692 16545061 -127737428 - THE1C LTR MaLR 0 375 1 488 289 37 6 chr12 16545952 16546135 -127736354 + L1 LINE L1 4392 4578 -1568 170 47 0 0 chr12 16546151 16546366 -127736123 + AT_rich Low_complexity Low_complexity 1 215 0 196 101 73 37 chr12 16546366 16546475 -127736014 + (TTA)n Simple_repeat Simple_repeat 1 113 0 52 19 0 0 chr12 16546475 16546529 -127735960 + AT_rich Low_complexity Low_complexity 1 54 0 1942 270 75 65 chr12 16547225 16547834 -127734655 + L2 LINE L2 63 665 -2649 1970 161 0 3 chr12 16547834 16548144 -127734345 - AluJo SINE Alu 0 312 4 1942 270 75 65 chr12 16548144 16548408 -127734081 + L2 LINE L2 665 948 -2366 2113 113 0 0 chr12 16548408 16548683 -127733806 - AluSg SINE Alu -35 275 1 1942 270 75 65 chr12 16548683 16548759 -127733730 + L2 LINE L2 948 1022 -2292 378 186 12 35 chr12 16549217 16549303 -127733186 - L2 LINE L2 -203 3069 2986 1387 203 10 26 chr12 16550107 16550413 -127732076 + AluJb SINE Alu 1 301 -11 1710 232 59 18 chr12 16550575 16551019 -127731470 + LTR40b LTR ERVL 1 462 0 1350 194 46 55 chr12 16551431 16551468 -127731021 + MLT1D LTR MaLR 1 37 -468 1778 202 11 30 chr12 16551468 16551834 -127730655 + MLT1A1 LTR MaLR 5 363 -2 1350 194 46 55 chr12 16551834 16552049 -127730440 + MLT1D LTR MaLR 37 252 -253 447 35 0 0 chr12 16552049 16552106 -127730383 + (GA)n Simple_repeat Simple_repeat 2 58 0 1350 194 46 55 chr12 16552106 16552197 -127730292 + MLT1D LTR MaLR 252 342 -163 1540 150 0 37 chr12 16552197 16552497 -127729992 - L1PA13 LINE L1 -1286 4860 4572 6491 85 3 1 chr12 16552498 16553795 -127728694 + L1PA13 LINE L1 4857 6162 -1 381 141 206 43 chr12 16553795 16553887 -127728602 + MLT1D LTR MaLR 327 433 -72 189 250 206 0 chr12 16554073 16554165 -127728324 - L2 LINE L2 -1880 1434 1324 541 250 77 92 chr12 16554963 16555511 -127726978 + MLT1G LTR MaLR 18 558 -9 739 234 104 9 chr12 16555518 16555740 -127726749 + MIR SINE MIR 20 262 0 325 314 34 8 chr12 16555954 16556072 -127726417 + MIR SINE MIR 122 242 -20 222 37 0 0 chr12 16556517 16556544 -127725945 + (CA)n Simple_repeat Simple_repeat 1 27 0 211 303 0 30 chr12 16557258 16557324 -127725165 - MIR3 SINE MIR -6 202 139 272 341 0 0 chr12 16557359 16557444 -127725045 + MIR SINE MIR 63 147 -115 37 72 0 36 chr12 16557602 16557685 -127724804 + GC_rich Low_complexity Low_complexity 1 80 0 723 46 37 0 chr12 16557886 16557994 -127724495 - L1P LINE L1 -6032 114 3 2036 260 74 61 chr12 16558125 16560504 -127721985 + L1ME3 LINE L1 3205 5954 -208 * 3427 59 6 2 chr12 16560498 16560989 -127721500 - L1P LINE L1 -2553 3593 3101 21 36 0 0 chr12 16561343 16561371 -127721118 + GC_rich Low_complexity Low_complexity 1 28 0 180 193 0 45 chr12 16561522 16561610 -127720879 + G-rich Low_complexity Low_complexity 2 85 0 2190 233 56 11 chr12 16561716 16561912 -127720577 + L1ME LINE L1 4501 4687 -1477 1835 114 0 19 chr12 16561912 16562198 -127720291 + AluSc SINE Alu 22 302 0 2190 233 56 11 chr12 16562198 16563202 -127719287 + L1ME LINE L1 4687 5766 -398 24 32 0 0 chr12 16564938 16564969 -127717520 + AT_rich Low_complexity Low_complexity 1 31 0 705 205 53 25 chr12 16565301 16565568 -127716921 + MLT1A2 LTR MaLR 79 369 -5 564 219 19 19 chr12 16566228 16566388 -127716101 + GA-rich Low_complexity Low_complexity 2 161 0 1185 112 6 6 chr12 16566513 16566682 -127715807 + AluSg/x SINE Alu 133 301 -11 181 200 44 22 chr12 16566938 16566983 -127715506 + L2 LINE L2 3239 3284 -29 28 29 0 0 chr12 16568770 16568805 -127713684 + GC_rich Low_complexity Low_complexity 1 35 0 2215 149 69 9 chr12 16569229 16569665 -127712824 - ERVL LTR ERVL -35 5729 5268 538 206 237 0 chr12 16569813 16569944 -127712545 + MIR SINE MIR 45 206 -56 26 74 0 0 chr12 16570729 16570783 -127711706 + AT_rich Low_complexity Low_complexity 1 54 0 547 104 67 0 chr12 16570787 16570951 -127711538 + (TA)n Simple_repeat Simple_repeat 2 176 0 480 103 48 24 chr12 16570971 16571136 -127711353 + (TA)n Simple_repeat Simple_repeat 2 170 0 2019 137 0 0 chr12 16571230 16571559 -127710930 + L1PB1 LINE L1 5784 6112 -39 444 306 18 14 chr12 16572257 16572418 -127710071 + MIR SINE MIR 2 171 -37 305 163 65 11 chr12 16572500 16572592 -127709897 + L1M LINE L1 5254 5350 -814 556 335 73 11 chr12 16572594 16572881 -127709608 - L2 LINE L2 -634 2680 2376 214 211 0 35 chr12 16572893 16572950 -127709539 + MIR SINE MIR 196 250 -12 1783 170 37 49 chr12 16575227 16575777 -127706712 - MLT2A2 LTR ERVL -8 546 1 210 339 0 0 chr12 16575972 16576031 -127706458 + MIR SINE MIR 91 149 -59 1485 205 66 88 chr12 16576087 16576585 -127705904 + MLT1H LTR MaLR 14 500 -49 1128 144 65 5 chr12 16576585 16576786 -127705703 + MER58A DNA MER1_type 2 214 -10 284 196 0 0 chr12 16576797 16576853 -127705636 + MLT1H LTR MaLR 494 549 0 509 293 112 24 chr12 16576929 16577363 -127705126 - MLT1H1 LTR MaLR -36 519 42 381 93 0 0 chr12 16577512 16577556 -127704933 + (TG)n Simple_repeat Simple_repeat 1 98 0 381 93 0 0 chr12 16577556 16577610 -127704879 + (TG)n Simple_repeat Simple_repeat 2 55 0 1901 255 85 2 chr12 16577952 16578764 -127703725 - L1M4 LINE L1 -1191 4955 4077 372 256 73 80 chr12 16579026 16579163 -127703326 + L2 LINE L2 3137 3272 0 425 303 19 49 chr12 16580303 16580465 -127702024 - MIR3 SINE MIR -10 198 42 2282 96 0 3 chr12 16581099 16581401 -127701088 - AluSg1 SINE Alu -8 301 1 237 33 0 0 chr12 16582614 16582644 -127699845 + (TG)n Simple_repeat Simple_repeat 1 30 0 494 313 70 41 chr12 16583603 16584018 -127698471 - L2 LINE L2 -126 3187 2761 362 349 33 13 chr12 16585147 16585299 -127697190 + MIR SINE MIR 13 167 -95 180 0 0 0 chr12 16585588 16585608 -127696881 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 28 29 0 0 chr12 16585870 16585905 -127696584 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr12 16587519 16587542 -127694947 + AT_rich Low_complexity Low_complexity 1 23 0 1657 147 48 20 chr12 16587895 16588015 -127694474 + AluJo SINE Alu 1 116 -196 180 0 0 0 chr12 16588015 16588035 -127694454 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1657 147 48 20 chr12 16588035 16588207 -127694282 + AluJo SINE Alu 116 301 -11 1810 157 20 10 chr12 16588427 16588720 -127693769 - AluJo SINE Alu -16 296 1 47 33 0 0 chr12 16589618 16589679 -127692810 + AT_rich Low_complexity Low_complexity 1 61 0 802 127 0 8 chr12 16589680 16589798 -127692691 - FLAM_C SINE Alu -22 121 5 183 80 0 0 chr12 16589820 16589845 -127692644 + (TG)n Simple_repeat Simple_repeat 2 26 0 308 235 0 0 chr12 16589845 16589913 -127692576 + L1MC4 LINE L1 6636 6703 -1339 214 202 35 9 chr12 16589918 16590032 -127692457 + (TA)n Simple_repeat Simple_repeat 1 117 0 1754 309 132 26 chr12 16590076 16590142 -127692347 - L2 LINE L2 -33 3280 3222 1752 127 0 12 chr12 16590142 16590394 -127692095 + AluSx SINE Alu 64 312 0 1754 309 132 26 chr12 16590394 16591632 -127690857 - L2 LINE L2 -91 3222 1835 23 0 0 0 chr12 16593515 16593538 -127688951 + AT_rich Low_complexity Low_complexity 1 23 0 401 0 20 0 chr12 16593918 16593967 -127688522 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 546 295 120 13 chr12 16594689 16594923 -127687566 + MIR SINE MIR 2 260 -2 207 162 0 0 chr12 16595425 16595462 -127687027 + (TG)n Simple_repeat Simple_repeat 1 37 0 518 132 37 31 chr12 16595676 16595922 -127686567 + CT-rich Low_complexity Low_complexity 1 247 0 330 132 0 0 chr12 16595956 16596009 -127686480 + (TA)n Simple_repeat Simple_repeat 2 54 0 239 194 69 0 chr12 16596076 16596148 -127686341 + L1MCa LINE L1 1992 2068 -4358 333 118 0 0 chr12 16596148 16596199 -127686290 + (TA)n Simple_repeat Simple_repeat 1 51 0 26 30 0 0 chr12 16598142 16598175 -127684314 + AT_rich Low_complexity Low_complexity 1 33 0 219 88 0 0 chr12 16598361 16598395 -127684094 + (CA)n Simple_repeat Simple_repeat 1 34 0 285 75 0 0 chr12 16600945 16600985 -127681504 + (TG)n Simple_repeat Simple_repeat 1 40 0 255 227 62 86 chr12 16601154 16601282 -127681207 + MIR SINE MIR 30 154 -108 205 95 24 24 chr12 16602980 16603022 -127679467 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 668 163 62 31 chr12 16603022 16603151 -127679338 - FLAM_C SINE Alu 0 133 1 502 337 49 0 chr12 16603393 16603556 -127678933 - MIR SINE MIR -86 176 6 952 259 41 4 chr12 16603580 16603823 -127678666 - MIR SINE MIR -3 259 8 206 213 0 82 chr12 16604373 16604434 -127678055 + L2 LINE L2 2564 2619 -695 452 249 67 84 chr12 16604449 16604674 -127677815 + MER102a DNA MER1_type 2 222 -108 402 241 9 18 chr12 16604766 16604878 -127677611 + MER102a DNA MER1_type 214 324 -6 200 214 18 0 chr12 16604963 16605019 -127677470 + (TATG)n Simple_repeat Simple_repeat 4 60 0 2827 10 0 0 chr12 16605087 16605396 -127677093 + AluYa5 SINE Alu 1 309 -2 1899 272 152 36 chr12 16606142 16607386 -127675103 - L2 LINE L2 0 3313 1917 318 307 73 20 chr12 16607395 16607545 -127674944 - L2 LINE L2 -1638 1676 1519 926 201 11 32 chr12 16607558 16607747 -127674742 + MER5A DNA MER1_type 3 187 -2 3034 240 60 20 chr12 16607896 16608931 -127673558 - MER69 DNA AcHobo 0 2526 1451 1116 285 85 8 chr12 16609300 16609665 -127672824 - MER69 DNA AcHobo -2133 393 1 1148 198 87 5 chr12 16610003 16610455 -127672034 + MER34 LTR ERV1 27 542 0 868 190 145 5 chr12 16611094 16611294 -127671195 + MER34 LTR ERV1 315 542 0 26 0 0 0 chr12 16612370 16612396 -127670093 + AT_rich Low_complexity Low_complexity 1 26 0 1259 282 127 25 chr12 16613822 16614525 -127667964 - L1MDa LINE L1 -772 5768 4951 252 0 0 0 chr12 16614525 16614553 -127667936 + (CA)n Simple_repeat Simple_repeat 1 28 0 1259 282 127 25 chr12 16614553 16614754 -127667735 - L1MDa LINE L1 -1589 4951 4772 21 71 0 0 chr12 16614874 16614916 -127667573 + AT_rich Low_complexity Low_complexity 1 42 0 228 288 0 17 chr12 16614938 16614997 -127667492 - L1MDa LINE L1 -2037 4503 4446 871 291 52 5 chr12 16615156 16615578 -127666911 - L1MDa LINE L1 -2264 4276 3835 422 331 99 15 chr12 16615639 16616417 -127666072 - L1MDa LINE L1 -4092 2629 1763 291 273 206 26 chr12 16616535 16616729 -127665760 + L2 LINE L2 2350 2578 -736 2592 209 22 0 chr12 16616729 16617182 -127665307 + MLT2B2 LTR ERVL 1 467 -48 450 0 0 0 chr12 16617182 16617232 -127665257 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2592 209 22 0 chr12 16617232 16617267 -127665222 + MLT2B2 LTR ERVL 467 500 -15 1176 269 102 26 chr12 16617276 16617963 -127664526 + L2 LINE L2 2575 3308 -5 2398 130 0 16 chr12 16618184 16618554 -127663935 + THE1B LTR MaLR 1 364 0 206 293 114 29 chr12 16619392 16619532 -127662957 - L2 LINE L2 0 3313 3162 23 150 0 0 chr12 16619866 16619906 -127662583 + AT_rich Low_complexity Low_complexity 1 40 0 450 0 0 0 chr12 16620531 16620581 -127661908 + (CA)n Simple_repeat Simple_repeat 2 51 0 295 283 72 36 chr12 16621657 16621795 -127660694 - L1ME3 LINE L1 -2 6160 6018 1322 197 122 3 chr12 16621817 16622112 -127660377 + MER7A DNA MER2_type 19 346 0 356 266 48 0 chr12 16622166 16622191 -127660298 - L1MA9 LINE L1 -17 6295 6271 1434 225 92 30 chr12 16622191 16622715 -127659774 - L1ME1 LINE L1 -43 6123 5568 12130 42 2 4 chr12 16622718 16626425 -127656064 - L1PA5 LINE L1 0 6154 2353 297 191 131 12 chr12 16626581 16626665 -127655824 - MER5C DNA MER1_type -202 122 29 485 267 61 6 chr12 16627137 16627302 -127655187 - MER112 DNA MER1_type -84 176 3 187 313 62 12 chr12 16627320 16627400 -127655089 + L2 LINE L2 3189 3272 0 21 57 0 0 chr12 16627458 16627493 -127654996 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 16628372 16628393 -127654096 + AT_rich Low_complexity Low_complexity 1 21 0 390 356 75 0 chr12 16628448 16628594 -127653895 + MER5B DNA MER1_type 17 173 -5 595 78 0 0 chr12 16629116 16629206 -127653283 + L1PA15 LINE L1 6071 6160 -5 1247 185 60 47 chr12 16630935 16631254 -127651235 - MER33 DNA MER1_type -1 323 1 366 204 80 0 chr12 16631431 16631519 -127650970 - MIR SINE MIR -56 206 112 225 94 0 0 chr12 16632526 16632558 -127649931 + (TTCTCC)n Simple_repeat Simple_repeat 5 36 0 333 0 0 0 chr12 16633989 16634026 -127648463 + (CA)n Simple_repeat Simple_repeat 2 38 0 342 0 0 0 chr12 16634959 16634997 -127647492 + (TG)n Simple_repeat Simple_repeat 2 39 0 543 275 66 75 chr12 16635052 16635386 -127647103 + MLT1I LTR MaLR 79 409 0 683 253 150 55 chr12 16635864 16636358 -127646131 + MLT1G LTR MaLR 48 588 -2 420 292 46 60 chr12 16637144 16637425 -127645064 + MLT1K LTR MaLR 309 585 -3 908 292 101 32 chr12 16637443 16637851 -127644638 - MLT1J2 LTR MaLR -14 436 1 451 307 63 29 chr12 16638346 16638551 -127643938 - LTR33 LTR ERVL -5 516 305 369 276 63 8 chr12 16639301 16639428 -127643061 - MIR SINE MIR -45 217 84 216 286 160 42 chr12 16640891 16641010 -127641479 - L2 LINE L2 -5 3308 3176 6703 55 24 5 chr12 16641268 16642175 -127640314 + L1PA7 LINE L1 5228 6151 -3 27 49 0 0 chr12 16642897 16642938 -127639551 + AT_rich Low_complexity Low_complexity 1 41 0 186 43 0 0 chr12 16643591 16643614 -127638875 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 244 390 96 14 chr12 16643770 16644395 -127638094 - L2 LINE L2 -147 3125 2451 865 308 28 4 chr12 16644580 16644833 -127637656 + MIR SINE MIR 4 262 0 383 221 53 11 chr12 16644840 16644935 -127637554 - MIR SINE MIR -57 205 107 310 256 0 45 chr12 16645076 16645209 -127637280 + G-rich Low_complexity Low_complexity 6 132 0 256 311 0 0 chr12 16650448 16650509 -127631980 - MIR SINE MIR -155 107 47 762 159 0 14 chr12 16651379 16651517 -127630972 - FLAM_C SINE Alu -2 141 6 831 301 51 58 chr12 16651715 16652110 -127630379 - L2 LINE L2 -1 3312 2921 691 233 89 41 chr12 16652659 16652951 -127629538 + MLT1J LTR MaLR 6 311 -200 2141 117 0 3 chr12 16653239 16653538 -127628951 - AluSc SINE Alu -11 298 1 225 277 68 68 chr12 16653584 16654068 -127628421 + L1MEc LINE L1 1838 2321 -4075 947 244 87 8 chr12 16654144 16654454 -127628035 + L1MEc LINE L1 2597 2942 -3273 1449 239 0 17 chr12 16654454 16654755 -127627734 - AluJo SINE Alu -16 296 1 947 244 87 8 chr12 16654755 16654813 -127627676 + L1MEc LINE L1 2942 2994 -3221 338 232 119 81 chr12 16655405 16655590 -127626899 + Charlie8 DNA MER1_type 3 194 -2223 612 230 7 35 chr12 16655909 16656104 -127626385 - MLT1F LTR MaLR -11 531 370 457 279 35 23 chr12 16656241 16656413 -127626076 - MLT1F LTR MaLR -421 174 1 255 312 42 3 chr12 16656999 16657141 -127625348 - MIR3 SINE MIR -63 145 15 189 0 0 0 chr12 16657229 16657250 -127625239 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 748 287 94 38 chr12 16657748 16658249 -127624240 + MLT1H LTR MaLR 21 549 0 249 315 19 23 chr12 16658377 16658573 -127623916 + MLT1H-int LTR MaLR 288 506 -865 2201 114 56 14 chr12 16658573 16658931 -127623558 - THE1C LTR MaLR 0 375 3 249 315 19 23 chr12 16658931 16658967 -127623522 + MLT1H-int LTR MaLR 506 541 -830 669 223 87 35 chr12 16659975 16660204 -127622285 + MLT1H LTR MaLR 1 241 -308 257 164 49 49 chr12 16660244 16660305 -127622184 + MLT1H LTR MaLR 331 391 -164 279 198 116 35 chr12 16660342 16660428 -127622061 + MLT1H LTR MaLR 456 548 -1 525 256 68 11 chr12 16661018 16661209 -127621280 - MER46C DNA MER2_type 0 338 137 3820 226 39 48 chr12 16661347 16662463 -127620026 - MSTD-int LTR MaLR -627 1108 2 1453 197 154 6 chr12 16662465 16662810 -127619679 - MSTD LTR MaLR 0 396 1 518 321 176 28 chr12 16662837 16663305 -127619184 - L2 LINE L2 0 3313 2772 1784 282 68 40 chr12 16663321 16664624 -127617865 + L1MEc LINE L1 37 1376 -5020 947 285 83 46 chr12 16664760 16665037 -127617452 - L1MEc LINE L1 -4576 1820 1555 2258 71 0 10 chr12 16665037 16665333 -127617156 - AluY SINE Alu -18 293 1 947 285 83 46 chr12 16665333 16665663 -127616826 - L1MEc LINE L1 -4841 1555 1239 306 0 0 0 chr12 16665663 16665697 -127616792 + (TG)n Simple_repeat Simple_repeat 1 34 0 947 285 83 46 chr12 16665697 16666067 -127616422 - L1MEc LINE L1 -5157 1239 806 418 319 71 45 chr12 16666106 16666534 -127615955 - L1MEc LINE L1 -5663 733 36 23 0 0 0 chr12 16666775 16666798 -127615691 + AT_rich Low_complexity Low_complexity 1 23 0 238 300 43 0 chr12 16666825 16666895 -127615594 - L2 LINE L2 -1 3271 3199 435 321 8 0 chr12 16667586 16667720 -127614769 - MIR SINE MIR -25 237 103 279 354 102 16 chr12 16667898 16668065 -127614424 - MIR SINE MIR -62 146 6 22 35 0 0 chr12 16668109 16668138 -127614351 + AT_rich Low_complexity Low_complexity 1 29 0 640 221 0 8 chr12 16668767 16668889 -127613600 + FLAM_A SINE Alu 1 121 -12 392 276 141 56 chr12 16670562 16670712 -127611777 + L2 LINE L2 2943 3079 -193 195 42 0 0 chr12 16670712 16670736 -127611753 + (CA)n Simple_repeat Simple_repeat 1 24 0 392 276 141 56 chr12 16670736 16670889 -127611600 + L2 LINE L2 3079 3272 0 300 154 22 22 chr12 16672012 16672103 -127610386 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 220 236 18 0 chr12 16672125 16672180 -127610309 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 403 281 62 12 chr12 16673041 16673201 -127609288 - L1ME4a LINE L1 -11 6110 5943 780 116 75 7 chr12 16673947 16674093 -127608396 + THE1C LTR MaLR 200 355 -20 2606 48 0 0 chr12 16674312 16674623 -127607866 - AluY SINE Alu 0 311 1 790 130 0 30 chr12 16676306 16676437 -127606052 + FLAM_C SINE Alu 3 129 -4 248 329 162 45 chr12 16676457 16676901 -127605588 + L2 LINE L2 691 1186 -2128 1949 114 0 7 chr12 16677009 16677308 -127605181 - L1P4 LINE L1 -471 5690 5394 338 333 117 46 chr12 16678057 16678555 -127603934 - L2 LINE L2 -990 2324 1792 654 198 70 0 chr12 16678712 16678869 -127603620 + MER105 DNA DNA 1 168 -36 366 259 191 8 chr12 16678871 16679002 -127603487 + MER5A DNA MER1_type 35 189 0 601 247 27 70 chr12 16679010 16679196 -127603293 - MER5B DNA MER1_type 0 178 1 21 36 0 0 chr12 16679382 16679410 -127603079 + AT_rich Low_complexity Low_complexity 1 28 0 747 164 14 14 chr12 16680052 16680198 -127602291 + THE1C LTR MaLR 1 146 -229 2413 144 6 18 chr12 16680302 16680717 -127601772 - L1P LINE L1 -743 5403 5017 2098 111 10 16 chr12 16680717 16681023 -127601466 - AluSq SINE Alu -9 304 1 2413 144 6 18 chr12 16681023 16681158 -127601331 - L1P LINE L1 -1129 5017 4882 2135 192 31 2 chr12 16681159 16681575 -127600914 + MSTA LTR MaLR 1 428 0 6210 173 3 6 chr12 16681575 16682695 -127599794 + MSTA-int LTR MaLR 1 1116 -535 4947 32 2 3 chr12 16682812 16683405 -127599084 + L1PA4 LINE L1 5564 6155 0 25 31 0 0 chr12 16683405 16683437 -127599052 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr12 16683637 16683663 -127598826 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr12 16684458 16684482 -127598007 + AT_rich Low_complexity Low_complexity 1 24 0 2134 152 0 0 chr12 16684797 16685107 -127597382 - AluSx SINE Alu -2 310 1 302 376 32 0 chr12 16685348 16685473 -127597016 + MER5B DNA MER1_type 2 130 -48 2141 154 63 49 chr12 16685477 16686003 -127596486 - L1MB3 LINE L1 0 6183 5651 379 399 7 13 chr12 16686141 16686449 -127596040 + HERV16 LTR ERVL 1271 1576 -3420 17873 53 0 6 chr12 16686597 16688935 -127593554 - L1P LINE L1 -3820 2326 1 183 184 20 41 chr12 16689299 16689348 -127593141 - L2 LINE L2 0 3313 3266 25 0 0 0 chr12 16690208 16690233 -127592256 + AT_rich Low_complexity Low_complexity 1 25 0 334 368 21 51 chr12 16690629 16691058 -127591431 - LTR16C LTR ERVL -4 487 72 21 0 0 0 chr12 16691402 16691423 -127591066 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 16691464 16691488 -127591001 + AT_rich Low_complexity Low_complexity 1 24 0 366 299 175 16 chr12 16691609 16691803 -127590686 - L1MEd LINE L1 -5208 911 687 468 86 0 0 chr12 16691837 16691907 -127590582 + (GA)n Simple_repeat Simple_repeat 1 70 0 338 363 87 45 chr12 16691911 16692266 -127590223 - L1MEd LINE L1 -5479 640 271 1034 57 0 0 chr12 16692343 16692465 -127590024 - AluSq/x SINE Alu -180 133 12 249 98 0 0 chr12 16692537 16692578 -127589911 + (TG)n Simple_repeat Simple_repeat 2 42 0 4688 211 62 43 chr12 16692749 16693378 -127589111 + L1M4 LINE L1 3807 4423 -1761 1853 156 57 79 chr12 16693378 16693820 -127588669 + MSTB1 LTR MaLR 1 432 0 4688 211 62 43 chr12 16693820 16694310 -127588179 + L1M4 LINE L1 4423 4903 -1281 2240 114 0 7 chr12 16694310 16694609 -127587880 - AluSc SINE Alu -12 297 1 4688 211 62 43 chr12 16694609 16695160 -127587329 + L1M4 LINE L1 4903 5513 -671 2542 119 6 3 chr12 16695160 16695521 -127586968 - THE1B LTR MaLR 0 364 3 4688 211 62 43 chr12 16695521 16695691 -127586798 + L1M4 LINE L1 5513 5678 -506 16520 42 6 2 chr12 16696446 16698545 -127583944 + L1P LINE L1 2913 5020 -1126 31 0 0 0 chr12 16699708 16699739 -127582750 + AT_rich Low_complexity Low_complexity 1 31 0 188 184 0 0 chr12 16700724 16700762 -127581727 - L2 LINE L2 -14 3299 3262 6744 60 4 8 chr12 16701847 16702834 -127579655 - L1PA8 LINE L1 -4 6168 5167 727 118 0 0 chr12 16704107 16704217 -127578272 - AluY SINE Alu -201 110 1 254 302 54 40 chr12 16704982 16705131 -127577358 + L2 LINE L2 2670 2820 -494 672 259 81 10 chr12 16705966 16706163 -127576326 + MIR SINE MIR 8 218 -44 721 280 51 16 chr12 16706310 16706567 -127575922 - MLT1F1 LTR MaLR -300 267 2 480 171 9 0 chr12 16707538 16707643 -127574846 + L1MA8 LINE L1 6186 6291 0 1095 135 48 70 chr12 16708711 16708941 -127573548 + AluJo SINE Alu 87 311 -1 28 48 0 0 chr12 16708974 16709016 -127573473 + AT_rich Low_complexity Low_complexity 1 42 0 7293 41 19 11 chr12 16709157 16710166 -127572323 - L1PA5 LINE L1 -5 6149 5139 720 241 25 46 chr12 16710275 16710557 -127571932 - L1ME LINE L1 -632 5599 5324 337 275 64 7 chr12 16710559 16711303 -127571186 - L1ME LINE L1 -2160 4055 3095 37 23 0 0 chr12 16711330 16711374 -127571115 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr12 16711511 16711536 -127570953 + AT_rich Low_complexity Low_complexity 1 25 0 1232 146 15 0 chr12 16711560 16711765 -127570724 - MER2 DNA MER2_type -136 209 2 497 178 9 9 chr12 16711765 16711866 -127570623 + MER53 DNA DNA 88 188 -1 295 269 28 99 chr12 16711875 16712016 -127570473 + MIR SINE MIR 102 232 -30 1526 203 12 34 chr12 16713663 16713698 -127568791 - MST-int LTR MaLR -6 1645 1611 4007 138 13 5 chr12 16713698 16714328 -127568161 + MER41B LTR ERV1 1 635 0 1526 203 12 34 chr12 16714328 16714618 -127567871 - MST-int LTR MaLR -40 1611 1327 213 94 0 0 chr12 16715286 16715318 -127567171 + (GA)n Simple_repeat Simple_repeat 2 33 0 229 309 37 98 chr12 16716082 16716458 -127566031 - L2 LINE L2 -76 3237 2885 229 323 21 10 chr12 16716835 16716931 -127565558 - L2 LINE L2 -496 2818 2722 1702 293 59 20 chr12 16717247 16718152 -127564337 + L1M4 LINE L1 3102 4041 -2105 467 318 42 8 chr12 16718327 16718563 -127563926 - MLT1-int LTR MaLR -843 528 285 310 259 19 19 chr12 16718555 16718663 -127563826 - MLT1-int LTR MaLR -1623 112 5 * 305 272 59 88 chr12 16720367 16720503 -127561986 - L2 LINE L2 -4 3309 3178 451 267 121 56 chr12 16720576 16720808 -127561681 + LTR16C LTR ERVL 1 247 -244 336 205 116 54 chr12 16720936 16721048 -127561441 - MIR SINE MIR 0 262 144 405 274 9 19 chr12 16722093 16722308 -127560181 - L1ME LINE L1 -4012 2384 2172 490 204 9 0 chr12 16722416 16722524 -127559965 - L1M LINE L1 -741 5423 5315 248 226 66 38 chr12 16722537 16722643 -127559846 + L1M4 LINE L1 5101 5209 -937 244 301 151 0 chr12 16722711 16722804 -127559685 + L2 LINE L2 3207 3313 0 258 296 25 0 chr12 16723203 16723284 -127559205 + MIR3 SINE MIR 113 195 -13 207 0 0 0 chr12 16724295 16724318 -127558171 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 642 96 10 0 chr12 16724422 16724526 -127557963 - HSMAR2 DNA Mariner -1 1301 1197 4210 47 0 4 chr12 16724654 16725183 -127557306 + L1PA4 LINE L1 5629 6155 0 2137 121 3 3 chr12 16725203 16725501 -127556988 + AluSx SINE Alu 4 301 -11 798 292 54 21 chr12 16725506 16725838 -127556651 - HERV16 LTR ERVL -2454 2542 2200 6287 139 13 4 chr12 16725999 16727003 -127555486 - HSMAR2 DNA Mariner -124 1178 166 1473 253 78 45 chr12 16727208 16727577 -127554912 + L1MEc LINE L1 1575 1930 -4285 537 16 0 0 chr12 16727577 16727639 -127554850 + (CA)n Simple_repeat Simple_repeat 1 62 0 1473 253 78 45 chr12 16727639 16728492 -127553997 + L1MEc LINE L1 1930 2797 -3418 190 221 130 26 chr12 16729016 16729093 -127553396 + MIR3 SINE MIR 117 201 -7 254 277 76 8 chr12 16729595 16729714 -127552775 - LTR33A LTR ERVL -24 499 373 241 179 75 60 chr12 16729979 16730046 -127552443 - LTR33A LTR ERVL -401 122 55 2459 76 0 13 chr12 16730537 16730851 -127551638 + AluY SINE Alu 1 310 -1 22 70 0 0 chr12 16730893 16730936 -127551553 + AT_rich Low_complexity Low_complexity 1 43 0 543 305 18 24 chr12 16732003 16732167 -127550322 + MIR SINE MIR 12 174 -88 720 241 80 16 chr12 16732170 16732419 -127550070 + Charlie4a DNA MER1_type 244 508 0 259 319 82 7 chr12 16732425 16732560 -127549929 + MLT1J LTR MaLR 326 470 -41 336 289 67 62 chr12 16732602 16732969 -127549520 - HAL1b LINE L1 -780 1550 1186 2113 140 42 22 chr12 16732969 16733326 -127549163 + THE1B LTR MaLR 1 364 0 336 289 67 62 chr12 16733326 16733431 -127549058 - HAL1b LINE L1 -1144 1186 89 983 283 56 24 chr12 16733634 16734225 -127548264 + L1MCa LINE L1 961 1570 -4856 2743 19 3 0 chr12 16734341 16734651 -127547838 - AluY SINE Alu 0 311 1 1563 116 9 17 chr12 16734653 16734885 -127547604 - AluSp SINE Alu -15 298 69 690 236 40 25 chr12 16734987 16735186 -127547303 + L1ME2 LINE L1 5857 6058 -106 1417 211 69 61 chr12 16735194 16735587 -127546902 - MSTD LTR MaLR 0 396 1 2264 238 67 7 chr12 16735592 16736171 -127546318 - MSTD-int LTR MaLR -6 1729 1116 227 102 0 0 chr12 16736966 16737015 -127545474 - LTR66 LTR ERVL -167 443 395 318 50 0 0 chr12 16737016 16737056 -127545433 + (CA)n Simple_repeat Simple_repeat 2 41 0 203 139 23 23 chr12 16737057 16737100 -127545389 + (TA)n Simple_repeat Simple_repeat 2 44 0 419 289 113 50 chr12 16737249 16737630 -127544859 + MLT1E LTR MaLR 42 494 -101 287 313 129 18 chr12 16738345 16738508 -127543981 - MIR SINE MIR -8 254 74 284 252 154 16 chr12 16839368 16839491 -127442998 - MIR SINE MIR -6 256 117 453 294 19 47 chr12 16839725 16839782 -127442707 - L2 LINE L2 0 3313 3256 793 213 34 34 chr12 16839782 16839989 -127442500 + MER3 DNA MER1_type 3 209 0 453 294 19 47 chr12 16839989 16840086 -127442403 - L2 LINE L2 -57 3256 3164 1683 107 0 0 chr12 16840086 16840310 -127442179 + AluSq SINE Alu 1 224 -89 453 294 19 47 chr12 16840310 16840365 -127442124 - L2 LINE L2 -149 3164 3109 2084 111 3 10 chr12 16840753 16841051 -127441438 + AluSg SINE Alu 1 296 -14 552 279 77 11 chr12 16841832 16842015 -127440474 - MIR SINE MIR -37 225 31 23 0 0 0 chr12 16842572 16842595 -127439894 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr12 16842949 16842972 -127439517 + AT_rich Low_complexity Low_complexity 1 23 0 358 315 69 15 chr12 16843670 16843800 -127438689 + MIR SINE MIR 16 152 -56 1960 147 0 3 chr12 16844268 16844575 -127437914 + AluSg SINE Alu 1 306 -4 814 266 86 4 chr12 16845590 16845823 -127436666 - MIR SINE MIR -10 252 1 2303 110 0 0 chr12 16847263 16847572 -127434917 + AluSc SINE Alu 1 309 0 240 335 129 52 chr12 16847633 16848062 -127434427 - L2 LINE L2 -73 3199 2751 210 37 0 0 chr12 16848238 16848265 -127434224 + (T)n Simple_repeat Simple_repeat 1 27 0 3147 173 28 11 chr12 16848533 16849146 -127433343 + L1MB3 LINE L1 5553 6175 -8 205 200 0 0 chr12 16849346 16849381 -127433108 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 731 172 108 6 chr12 16850566 16850723 -127431766 + MER61A LTR ERV1 1 173 -170 186 326 186 8 chr12 16850736 16850865 -127431624 + L2 LINE L2 2907 3058 -214 316 195 161 0 chr12 16851318 16851405 -127431084 + MIR SINE MIR 73 173 -89 695 219 112 0 chr12 16851598 16851767 -127430722 - MER58C DNA MER1_type 0 215 28 879 232 49 5 chr12 16852547 16852771 -127429718 + MIR SINE MIR 19 252 -10 2102 129 12 21 chr12 16854156 16854496 -127427993 - MER1B DNA MER1_type 0 337 1 1527 178 58 4 chr12 16855274 16855427 -127427062 - AluJo SINE Alu -22 290 147 450 0 0 0 chr12 16855427 16855477 -127427012 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1527 178 58 4 chr12 16855477 16855598 -127426891 - AluJo SINE Alu -165 147 1 243 284 0 25 chr12 16857578 16857659 -127424830 - MIR SINE MIR -89 173 95 296 304 82 10 chr12 16857660 16857854 -127424635 + L1MEd LINE L1 2 209 -5910 346 349 73 81 chr12 16858042 16858469 -127424020 + L1MEd LINE L1 264 686 -5433 195 69 0 0 chr12 16858469 16858498 -127423991 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 346 349 73 81 chr12 16858498 16858660 -127423829 + L1MEd LINE L1 686 848 -5271 1502 198 0 7 chr12 16858752 16859030 -127423459 + AluJo SINE Alu 1 276 -36 229 200 22 0 chr12 16859040 16859085 -127423404 - MER75 DNA T2_type 0 514 469 1172 251 69 14 chr12 16859421 16859767 -127422722 + LTR16A LTR ERVL 21 385 -65 1732 104 60 19 chr12 16859772 16860040 -127422449 - AluSx SINE Alu 0 312 34 1109 84 0 7 chr12 16860040 16860182 -127422307 - AluSq/x SINE Alu -172 141 1 467 183 0 12 chr12 16860182 16860264 -127422225 + LTR16A LTR ERVL 370 450 0 230 273 0 39 chr12 16860489 16860566 -127421923 - MIR3 SINE MIR -3 205 132 2326 113 0 0 chr12 16861698 16862008 -127420481 + AluSx SINE Alu 1 310 -2 489 285 16 7 chr12 16862448 16862617 -127419872 + MIR SINE MIR 17 189 -19 228 205 0 0 chr12 16863049 16863088 -127419401 - tRNA-Lys-AAG tRNA tRNA -37 39 1 306 194 45 0 chr12 16863570 16863637 -127418852 - L1MCa LINE L1 -4361 2065 1996 347 338 171 0 chr12 16864407 16864623 -127417866 + MIR SINE MIR 2 254 -8 652 221 16 0 chr12 16864721 16864843 -127417646 - FLAM_A SINE Alu -9 124 1 450 285 79 67 chr12 16864996 16865525 -127416964 + L2 LINE L2 2708 3284 -29 34 0 0 0 chr12 16866186 16866220 -127416269 + AT_rich Low_complexity Low_complexity 1 34 0 276 245 129 20 chr12 16866220 16866367 -127416122 - L1ME4a LINE L1 -5 6116 5954 1374 64 139 0 chr12 16866491 16866693 -127415796 + MER30 DNA MER1_type 1 230 0 374 294 32 32 chr12 16866827 16866978 -127415511 - L1ME4a LINE L1 -424 5697 5544 1394 199 74 34 chr12 16866978 16867329 -127415160 - MLT1A1 LTR MaLR 0 365 1 374 294 32 32 chr12 16867329 16867398 -127415091 - L1ME4a LINE L1 -576 5545 5477 1648 174 51 4 chr12 16867435 16867711 -127414778 + AluJb SINE Alu 1 289 -23 2166 134 36 28 chr12 16868958 16869317 -127413172 + THE1B LTR MaLR 1 362 -2 723 133 7 84 chr12 16869719 16869862 -127412627 + FLAM_C SINE Alu 2 133 0 217 298 0 0 chr12 16871162 16871209 -127411280 - L2 LINE L2 -12 3260 3214 2431 79 0 0 chr12 16871971 16872274 -127410215 + AluSg SINE Alu 1 303 -7 397 113 0 0 chr12 16873232 16873294 -127409195 + L1M4 LINE L1 5175 5236 -910 2657 165 46 33 chr12 16873307 16873984 -127408505 - L1MCa LINE L1 -4604 1822 1046 868 248 34 4 chr12 16873982 16874248 -127408241 - L1M4 LINE L1 -3160 2986 2713 * 457 301 85 34 chr12 16874540 16874776 -127407713 - MIR SINE MIR -2 260 13 2125 123 3 0 chr12 16875699 16875991 -127406498 - AluSx SINE Alu -19 293 1 227 303 142 19 chr12 16876769 16876931 -127405558 - MIR SINE MIR 0 262 81 1885 133 28 69 chr12 16877495 16877886 -127404603 - THE1C LTR MaLR 0 375 1 1638 170 67 3 chr12 16878251 16878534 -127403955 - AluJb SINE Alu -11 301 1 2473 52 0 52 chr12 16878806 16879134 -127403355 + AluY SINE Alu 1 311 0 258 244 59 104 chr12 16879230 16879365 -127403124 - MIR SINE MIR -50 212 84 181 282 0 70 chr12 16879813 16879884 -127402605 - MIR SINE MIR -37 225 160 1934 165 0 3 chr12 16880283 16880580 -127401909 - AluJo SINE Alu -16 296 1 256 265 0 0 chr12 16881649 16881717 -127400772 - L1MC5 LINE L1 -723 7238 7171 1154 239 20 0 chr12 16881854 16882101 -127400388 - MIR SINE MIR 0 262 11 22 0 0 0 chr12 16882175 16882197 -127400292 + AT_rich Low_complexity Low_complexity 1 22 0 260 264 64 9 chr12 16882338 16882448 -127400041 + L1MC5 LINE L1 7014 7129 -832 404 319 57 7 chr12 16883067 16883208 -127399281 + L2 LINE L2 3117 3264 -8 616 318 59 13 chr12 16883445 16883684 -127398805 - MIR SINE MIR 0 262 13 2280 222 28 8 chr12 16883703 16884159 -127398330 + MLT2B2 LTR ERVL 1 469 -46 273 57 0 0 chr12 16884159 16884194 -127398295 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 2280 222 28 8 chr12 16884194 16884242 -127398247 + MLT2B2 LTR ERVL 469 515 0 2174 97 0 0 chr12 16884659 16884938 -127397551 + AluSg SINE Alu 1 279 -31 355 19 19 19 chr12 16884943 16884996 -127397493 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 391 280 74 51 chr12 16885073 16885248 -127397241 + MIR SINE MIR 23 201 -61 788 288 88 0 chr12 16885486 16885691 -127396798 + MER45C DNA AcHobo 1 223 -730 507 269 117 0 chr12 16885728 16885873 -127396616 + MER45C DNA AcHobo 421 582 -371 5974 43 0 1 chr12 16886127 16886847 -127395642 - L1PA5 LINE L1 -20 6134 5416 * 13654 44 3 3 chr12 16886846 16888591 -127393898 + L1P LINE L1 3680 5424 -730 669 260 28 11 chr12 16888930 16889111 -127393378 - MIR SINE MIR -36 226 43 2104 102 44 0 chr12 16889262 16889555 -127392934 - AluSc SINE Alu -3 306 1 233 260 20 120 chr12 16889666 16889714 -127392775 + MIR3 SINE MIR 115 150 -58 337 273 98 38 chr12 16889714 16889897 -127392592 - MER117 DNA MER1_type -3 194 1 233 260 20 120 chr12 16889897 16889948 -127392541 + MIR3 SINE MIR 149 204 -4 247 282 167 26 chr12 16890675 16890831 -127391658 + L2 LINE L2 2268 2445 -869 297 321 186 7 chr12 16891017 16891157 -127391332 + MIR3 SINE MIR 16 180 -28 2482 64 0 6 chr12 16892133 16892445 -127390044 + AluY SINE Alu 1 310 -1 278 264 77 65 chr12 16892499 16892654 -127389835 + MIR SINE MIR 60 216 -46 237 230 40 40 chr12 16892923 16892997 -127389492 - L3b LINE CR1 -117 1466 1393 399 313 90 0 chr12 16893730 16893864 -127388625 + L2 LINE L2 3127 3272 0 199 225 169 0 chr12 16893942 16894013 -127388476 + L2 LINE L2 3221 3303 -10 2128 122 0 3 chr12 16895471 16895766 -127386723 + AluSx SINE Alu 3 296 -16 381 336 30 8 chr12 16895945 16896079 -127386410 - L2 LINE L2 -3 3310 3174 2540 68 0 0 chr12 16896560 16896871 -127385618 + AluY SINE Alu 1 311 0 249 284 0 0 chr12 16897114 16897188 -127385301 + (TAA)n Simple_repeat Simple_repeat 3 76 0 239 284 134 31 chr12 16899851 16899978 -127382511 + MIR SINE MIR 106 245 -17 386 284 66 44 chr12 16901697 16901743 -127380746 + L1MC4a LINE L1 7219 7263 -545 2259 113 0 3 chr12 16901743 16902053 -127380436 + AluSc SINE Alu 1 309 0 386 284 66 44 chr12 16902053 16902189 -127380300 + L1MC4a LINE L1 7263 7405 -403 923 249 231 48 chr12 16902195 16902693 -127379796 - MLT1G1 LTR MaLR -6 589 1 390 181 57 0 chr12 16902693 16902798 -127379691 + L1MC4 LINE L1 7481 7591 -451 704 156 239 0 chr12 16902811 16902978 -127379511 + MER3 DNA MER1_type 1 207 -2 278 159 0 0 chr12 16902943 16902987 -127379502 - MER3 DNA MER1_type -125 84 41 * 688 277 59 59 chr12 16902987 16903377 -127379112 + L1MC4 LINE L1 7611 8000 -42 28 0 0 0 chr12 16903413 16903441 -127379048 + AT_rich Low_complexity Low_complexity 1 28 0 13350 149 22 9 chr12 16903942 16907481 -127375008 + L1MA2 LINE L1 2718 6304 0 22 0 0 0 chr12 16908171 16908193 -127374296 + AT_rich Low_complexity Low_complexity 1 22 0 40 21 0 0 chr12 16908256 16908303 -127374186 + AT_rich Low_complexity Low_complexity 1 47 0 2492 68 0 10 chr12 16908570 16908881 -127373608 - AluSg SINE Alu -2 308 1 2148 81 3 62 chr12 16908962 16909285 -127373204 + AluSx SINE Alu 1 304 -8 1171 90 0 30 chr12 16909313 16909480 -127373009 + AluSq SINE Alu 152 313 0 192 179 0 0 chr12 16909793 16909832 -127372657 + (ATG)n Simple_repeat Simple_repeat 1 39 0 201 283 19 0 chr12 16910791 16910844 -127371645 - MIR3 SINE MIR -1 207 154 2303 90 27 0 chr12 16910924 16911225 -127371264 + AluSg SINE Alu 1 309 -1 1543 162 16 4 chr12 16912708 16912955 -127369534 - AluJb SINE Alu -12 300 51 874 95 0 0 chr12 16912964 16913080 -127369409 + FRAM SINE Alu 56 171 -5 21 0 0 0 chr12 16913126 16913147 -127369342 + AT_rich Low_complexity Low_complexity 1 21 0 217 348 36 27 chr12 16913657 16913769 -127368720 - L2 LINE L2 -1 3312 3200 352 164 0 0 chr12 16914441 16914502 -127367987 + Alu SINE Alu 241 301 0 1343 67 0 0 chr12 16914609 16914773 -127367716 + AluY SINE Alu 1 164 -147 229 190 17 69 chr12 16914785 16914843 -127367646 - L2 LINE L2 -544 2770 2716 207 0 0 0 chr12 16915316 16915339 -127367150 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 259 305 133 9 chr12 16915574 16915679 -127366810 - L2 LINE L2 0 3272 3155 22 0 0 0 chr12 16916653 16916675 -127365814 + AT_rich Low_complexity Low_complexity 1 22 0 717 149 19 0 chr12 16917318 16917479 -127365010 + (TA)n Simple_repeat Simple_repeat 1 164 0 258 367 61 0 chr12 16918488 16918586 -127363903 + L2 LINE L2 3163 3266 -6 21 36 0 0 chr12 16918838 16918866 -127363623 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 16919941 16919970 -127362519 + AT_rich Low_complexity Low_complexity 1 29 0 2187 88 3 3 chr12 16921737 16922044 -127360445 - AluSp SINE Alu 0 308 2 225 231 31 31 chr12 16923165 16923230 -127359259 + L2 LINE L2 3019 3083 -189 465 50 0 0 chr12 16923249 16923309 -127359180 + (CA)n Simple_repeat Simple_repeat 2 61 0 303 307 58 58 chr12 16923465 16923602 -127358887 + L2 LINE L2 3136 3272 0 314 309 15 52 chr12 16923688 16923824 -127358665 - L2 LINE L2 -5 3267 3137 480 302 73 10 chr12 16924131 16924323 -127358166 + MIR SINE MIR 2 205 -57 2156 133 115 20 chr12 16924426 16924817 -127357672 - MSTC LTR MaLR 0 428 1 4049 136 40 45 chr12 16924861 16924977 -127357512 + Tigger2 DNA MER2_type 1 116 -2602 1492 199 7 30 chr12 16924977 16925274 -127357215 + AluJo SINE Alu 1 290 -22 4049 136 40 45 chr12 16925274 16925898 -127356591 + Tigger2 DNA MER2_type 116 738 -1980 1301 164 50 0 chr12 16925990 16926228 -127356261 + Tigger2 DNA MER2_type 2469 2718 0 189 107 0 0 chr12 16926481 16926509 -127355980 + (A)n Simple_repeat Simple_repeat 1 28 0 22 94 0 0 chr12 16926622 16926686 -127355803 + AT_rich Low_complexity Low_complexity 1 64 0 11562 177 59 14 chr12 16926697 16929438 -127353051 + L1MC3 LINE L1 4914 7779 -6 256 280 0 32 chr12 16930334 16930427 -127352062 + L1ME4a LINE L1 5967 6056 -65 208 171 24 0 chr12 16932211 16932252 -127350237 + (CGAG)n Simple_repeat Simple_repeat 1 42 0 213 380 102 0 chr12 16933219 16933327 -127349162 - L3 LINE CR1 -15 1562 1444 276 254 154 23 chr12 16933355 16933485 -127349004 - MIR SINE MIR -4 258 112 830 319 223 33 chr12 16933567 16934181 -127348308 - L3 LINE CR1 -212 1365 869 3703 177 90 43 chr12 16934181 16935001 -127347488 + MER21B LTR ERV1 1 859 -4 830 319 223 33 chr12 16935001 16935379 -127347110 - L3 LINE CR1 -708 869 185 1790 158 3 0 chr12 16935481 16935766 -127346723 + AluSx SINE Alu 1 286 -26 668 285 83 56 chr12 16937218 16938300 -127344189 + L1MEd LINE L1 688 1817 -4579 23 0 0 0 chr12 16938316 16938339 -127344150 + AT_rich Low_complexity Low_complexity 1 23 0 326 292 200 0 chr12 16938521 16938651 -127343838 - MIR SINE MIR -103 159 4 242 212 117 22 chr12 16938762 16938944 -127343545 + L1MEd LINE L1 2147 2304 -3913 261 312 11 11 chr12 16938990 16939083 -127343406 + L1MEd LINE L1 2429 2521 -3875 180 164 27 14 chr12 16939191 16939264 -127343225 + (TA)n Simple_repeat Simple_repeat 2 75 0 1216 239 42 15 chr12 16939375 16939706 -127342783 - MER58B DNA MER1_type -1 340 1 27 92 0 0 chr12 16939757 16939833 -127342656 + AT_rich Low_complexity Low_complexity 1 76 0 2297 93 3 10 chr12 16939855 16940165 -127342324 + AluSg SINE Alu 2 309 -1 23 0 0 0 chr12 16940202 16940225 -127342264 + AT_rich Low_complexity Low_complexity 1 23 0 284 357 38 0 chr12 16940236 16940421 -127342068 + L1ME3A LINE L1 5760 5951 -219 225 94 0 0 chr12 16941219 16941251 -127341238 + (A)n Simple_repeat Simple_repeat 1 32 0 2034 131 0 0 chr12 16942394 16942856 -127339633 - AluSx SINE Alu 0 462 1 522 230 239 10 chr12 16942921 16943130 -127339359 - MER46C DNA MER2_type -1 337 81 23 0 0 0 chr12 16943752 16943775 -127338714 + AT_rich Low_complexity Low_complexity 1 23 0 2585 45 0 6 chr12 16944104 16944417 -127338072 + AluY SINE Alu 1 311 0 205 347 93 33 chr12 16944638 16944788 -127337701 - L2 LINE L2 0 3272 3114 1035 242 75 57 chr12 16944926 16945131 -127337358 + L2 LINE L2 2887 3104 -209 228 86 0 0 chr12 16945131 16945166 -127337323 + (CA)n Simple_repeat Simple_repeat 1 35 0 1035 242 75 57 chr12 16945166 16945332 -127337157 + L2 LINE L2 3104 3265 -48 229 306 76 14 chr12 16945340 16945484 -127337005 - L2 LINE L2 -234 3038 2886 186 191 0 0 chr12 16945537 16945579 -127336910 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2325 97 0 0 chr12 16945609 16945907 -127336582 + AluY SINE Alu 1 298 -13 186 284 63 21 chr12 16945987 16946082 -127336407 - L2 LINE L2 -372 2941 2843 1479 164 62 60 chr12 16946294 16946630 -127335859 - MER1B DNA MER1_type 0 337 1 2895 162 48 17 chr12 16947477 16947940 -127334549 + L1M3f LINE L1 1244 1720 -4845 2381 82 0 35 chr12 16947940 16948256 -127334233 + AluY SINE Alu 1 305 -6 2895 162 48 17 chr12 16948256 16948398 -127334091 + L1M3f LINE L1 1720 1856 -4709 483 175 0 0 chr12 16948386 16948510 -127333979 + L1M3f LINE L1 2401 2500 -4065 * 4596 182 22 10 chr12 16948531 16949375 -127333114 + L1M3f LINE L1 3826 4687 -2878 2209 119 0 3 chr12 16949375 16949685 -127332804 + AluSc SINE Alu 1 309 0 4596 182 22 10 chr12 16949685 16949872 -127332617 + L1M3f LINE L1 4687 4870 -2695 2221 118 0 3 chr12 16950547 16950887 -127331602 - AluSp SINE Alu 0 313 1 963 174 6 0 chr12 16950887 16951048 -127331441 - FRAM SINE Alu -13 163 2 817 264 32 0 chr12 16951070 16951281 -127331208 - MIR SINE MIR -34 228 13 245 306 121 12 chr12 16951316 16951489 -127331000 - L2 LINE L2 -1430 1884 1693 235 263 118 0 chr12 16951540 16951616 -127330873 + MIR3 SINE MIR 123 207 -1 2656 45 0 0 chr12 16953392 16953701 -127328788 - AluY SINE Alu -2 309 1 262 243 95 27 chr12 16955576 16955650 -127326839 + L2 LINE L2 3188 3266 -6 * 434 236 62 67 chr12 16955645 16955840 -127326649 - MIR SINE MIR -3 259 66 186 103 0 0 chr12 16956585 16956614 -127325875 + (CA)n Simple_repeat Simple_repeat 2 30 0 1640 158 14 21 chr12 16956678 16956969 -127325520 - AluJo SINE Alu -17 295 7 1819 154 14 0 chr12 16957003 16957322 -127325167 + AluSx SINE Alu 1 323 0 221 240 0 0 chr12 16957335 16957385 -127325104 - L2 LINE L2 0 3313 3264 506 267 33 11 chr12 16957651 16957831 -127324658 - MLT1L LTR MaLR -4 611 428 1664 188 28 0 chr12 16958338 16958625 -127323864 - AluJb SINE Alu -17 295 1 453 82 55 27 chr12 16959076 16959186 -127323303 + CT-rich Low_complexity Low_complexity 1 113 0 1416 99 0 0 chr12 16959190 16959371 -127323118 - AluSg/x SINE Alu -9 300 120 1323 180 36 62 chr12 16959375 16959680 -127322809 - AluJb SINE Alu -4 298 2 425 220 6 143 chr12 16959707 16959773 -127322716 - MLT1B LTR MaLR -3 592 561 4576 103 1 1 chr12 16959773 16960423 -127322066 + L1PA13 LINE L1 5496 6145 -18 425 220 6 143 chr12 16960423 16960524 -127321965 - MLT1B LTR MaLR -34 561 448 632 250 23 17 chr12 16960571 16960761 -127321728 - MLT1B LTR MaLR -11 379 174 731 291 25 18 chr12 16960805 16961062 -127321427 - MLT1G1 LTR MaLR -285 310 7 26 0 0 0 chr12 16961198 16961224 -127321265 + AT_rich Low_complexity Low_complexity 1 26 0 226 349 81 33 chr12 16962239 16962657 -127319832 + L2 LINE L2 2222 2740 -574 183 231 26 13 chr12 16962831 16962909 -127319580 + (TA)n Simple_repeat Simple_repeat 2 80 0 2234 117 3 3 chr12 16963172 16963470 -127319019 - AluSx SINE Alu -14 298 1 605 285 74 37 chr12 16963988 16964230 -127318259 - MIR SINE MIR 0 262 12 273 314 116 35 chr12 16965228 16965400 -127317089 + L2 LINE L2 2897 3082 -190 2230 81 7 3 chr12 16965433 16965749 -127316740 - AluSq SINE Alu 0 317 1 249 253 67 0 chr12 16965802 16965877 -127316612 + L2 LINE L2 3234 3313 0 1608 180 18 0 chr12 16966659 16966942 -127315547 - AluJb SINE Alu -24 288 1 30 0 0 0 chr12 16967329 16967359 -127315130 + AT_rich Low_complexity Low_complexity 1 30 0 3232 165 41 12 chr12 16967384 16968038 -127314451 + L1MB8 LINE L1 5374 6046 -132 1540 130 4 19 chr12 16969033 16969302 -127313187 + THE1B LTR MaLR 1 265 -99 1900 190 67 30 chr12 16969422 16969989 -127312500 + L1MD2 LINE L1 5670 6224 -18 1444 210 4 11 chr12 16970798 16971079 -127311410 + AluJo SINE Alu 1 279 -33 833 208 51 0 chr12 16971262 16971478 -127311011 - L1MD3 LINE L1 -21 7974 7748 325 239 26 9 chr12 16971913 16972026 -127310463 + L1MB8 LINE L1 6050 6164 -14 21 36 0 0 chr12 16972037 16972065 -127310424 + AT_rich Low_complexity Low_complexity 1 28 0 1929 124 40 0 chr12 16972140 16972415 -127310074 + AluSx SINE Alu 1 286 -26 26 30 0 0 chr12 16972418 16972451 -127310038 + AT_rich Low_complexity Low_complexity 1 33 0 670 196 0 0 chr12 16972612 16972724 -127309765 - FLAM_A SINE Alu -22 120 9 497 312 40 21 chr12 16972931 16973360 -127309129 - L1ME LINE L1 -353 5809 5373 242 291 27 7 chr12 16973399 16973547 -127308942 - L1ME LINE L1 -860 5286 5136 382 322 154 10 chr12 16973583 16973875 -127308614 - L1ME LINE L1 -1079 5067 4734 1740 234 40 38 chr12 16974697 16975198 -127307291 + MLT1D LTR MaLR 4 505 0 1995 148 0 10 chr12 16975228 16975539 -127306950 - AluJb SINE Alu -4 308 1 3433 136 0 19 chr12 16975664 16976201 -127306288 - MER1A DNA MER1_type 0 527 1 238 160 320 0 chr12 16976222 16976297 -127306192 + MIR SINE MIR 32 130 -78 345 125 0 0 chr12 16976313 16976369 -127306120 + (CA)n Simple_repeat Simple_repeat 2 57 0 24 32 0 0 chr12 16978737 16978768 -127303721 + AT_rich Low_complexity Low_complexity 1 31 0 1421 223 63 18 chr12 16980238 16980637 -127301852 + LTR40c LTR ERVL 43 459 -6 183 227 0 23 chr12 16980637 16980681 -127301808 + L2 LINE L2 3223 3265 -48 2348 96 0 0 chr12 16981670 16981971 -127300518 - AluSc SINE Alu -8 301 1 1976 173 18 12 chr12 16982103 16982438 -127300051 + MER1B DNA MER1_type 1 337 0 2185 104 7 19 chr12 16982805 16983112 -127299377 - AluSg SINE Alu -7 303 1 305 283 43 65 chr12 16983130 16983268 -127299221 + L2 LINE L2 3138 3272 0 2338 125 97 5 chr12 16983444 16983836 -127298653 - MSTA LTR MaLR 0 428 1 195 282 71 59 chr12 16983867 16983952 -127298537 - L2 LINE L2 -46 3226 3141 532 349 35 6 chr12 16985742 16985914 -127296575 - MER91A DNA MER1_type -1 195 19 1734 166 55 0 chr12 16987194 16987484 -127295005 - AluJb SINE Alu -6 306 1 228 329 101 74 chr12 16987630 16987779 -127294710 + L2 LINE L2 3093 3245 -27 274 200 0 0 chr12 16987804 16987849 -127294640 + MLT1E3 LTR MaLR 450 494 -130 2491 216 72 20 chr12 16987849 16988436 -127294053 + MLT1E3 LTR MaLR 1 617 -7 1637 177 13 35 chr12 16989166 16989477 -127293012 + AluJo SINE Alu 1 304 -8 180 0 0 0 chr12 16990060 16990080 -127292409 + (A)n Simple_repeat Simple_repeat 1 20 0 2221 91 6 28 chr12 16990086 16990405 -127292084 + AluSx SINE Alu 1 312 0 254 396 20 49 chr12 16991308 16991715 -127290774 - L2 LINE L2 -466 2848 2454 386 303 42 71 chr12 16992060 16992370 -127290119 + LTR16B LTR ERVL 162 462 -2 27 49 0 0 chr12 16992460 16992501 -127289988 + AT_rich Low_complexity Low_complexity 1 41 0 2226 114 3 0 chr12 16992543 16992841 -127289648 - AluSg SINE Alu -11 299 1 235 370 60 20 chr12 16994840 16995040 -127287449 + L2 LINE L2 1998 2205 -1109 1098 279 108 11 chr12 16995242 16995611 -127286878 - MLT1G1 LTR MaLR 0 595 191 2157 109 0 17 chr12 16995825 16996127 -127286362 - AluSc SINE Alu -12 297 1 196 106 0 64 chr12 16996232 16996279 -127286210 + (TATG)n Simple_repeat Simple_repeat 4 47 0 2037 121 0 0 chr12 16997200 16997508 -127284981 + AluSx SINE Alu 2 309 0 1990 117 10 3 chr12 16997617 16997907 -127284582 + AluSx SINE Alu 1 292 -20 199 268 113 10 chr12 16998068 16998165 -127284324 + MIR SINE MIR 156 262 0 240 230 26 158 chr12 16998303 16998455 -127284034 + L2 LINE L2 3180 3311 -2 * 273 334 89 64 chr12 16998452 16998766 -127283723 + L2 LINE L2 2988 3309 -4 1934 137 10 7 chr12 16999361 16999653 -127282836 + AluJb SINE Alu 5 297 -15 1131 253 245 19 chr12 16999902 17000148 -127282341 + L2 LINE L2 2433 2622 -691 4382 91 11 13 chr12 17000148 17000784 -127281705 - MER41B LTR ERV1 0 635 1 1131 253 245 19 chr12 17000784 17001228 -127281261 + L2 LINE L2 2622 3301 -12 21 0 0 0 chr12 17003070 17003091 -127279398 + AT_rich Low_complexity Low_complexity 1 21 0 1162 187 11 68 chr12 17003287 17003565 -127278924 - AluJb SINE Alu -6 306 45 243 192 72 112 chr12 17003743 17003820 -127278669 - L1ME4a LINE L1 -43 6078 6006 1962 92 70 4 chr12 17003820 17004091 -127278398 - AluSc SINE Alu -20 289 1 243 192 72 112 chr12 17004091 17004138 -127278351 - L1ME4a LINE L1 -115 6006 5959 582 309 86 0 chr12 17004595 17004757 -127277732 + MER5B DNA MER1_type 2 177 -1 373 343 130 10 chr12 17004757 17004942 -127277547 - L2 LINE L2 -650 2664 2455 647 262 108 38 chr12 17005119 17005344 -127277145 + LTR50 LTR ERVL 15 223 -572 210 37 0 0 chr12 17005344 17005371 -127277118 + (TTG)n Simple_repeat Simple_repeat 2 28 0 647 262 108 38 chr12 17005371 17005791 -127276698 + LTR50 LTR ERVL 223 786 -9 37 39 0 0 chr12 17007071 17007122 -127275367 + AT_rich Low_complexity Low_complexity 1 51 0 605 284 8 30 chr12 17007533 17007769 -127274720 + LTR16B LTR ERVL 234 464 0 1557 259 56 26 chr12 17007771 17008573 -127273916 - L1ME LINE L1 -5168 902 77 2304 106 0 0 chr12 17008838 17009140 -127273349 + AluSx SINE Alu 9 310 -2 867 304 199 18 chr12 17009218 17009894 -127272595 + L2 LINE L2 2254 3039 -233 240 185 80 80 chr12 17009934 17009978 -127272511 + L1ME LINE L1 5314 5357 -813 1524 158 124 75 chr12 17009978 17010447 -127272042 - LTR22B LTR ERVK 0 492 1 240 185 80 80 chr12 17010447 17010564 -127271925 + L1ME LINE L1 5356 5475 -695 561 206 0 0 chr12 17010855 17010957 -127271532 + FLAM_A SINE Alu 31 132 -10 1466 236 67 76 chr12 17011075 17011600 -127270889 - L1MC4 LINE L1 -3 8039 7511 2130 142 3 7 chr12 17011600 17011909 -127270580 + AluJb SINE Alu 1 308 -4 1466 236 67 76 chr12 17011909 17012066 -127270423 - L1MC4 LINE L1 -531 7511 7362 1726 234 19 28 chr12 17012066 17012532 -127269957 - LTR40b LTR ERVL 0 462 1 1466 236 67 76 chr12 17012532 17012584 -127269905 - L1MC4 LINE L1 -680 7362 7311 22 0 0 0 chr12 17012921 17012943 -127269546 + AT_rich Low_complexity Low_complexity 1 22 0 619 276 62 60 chr12 17013072 17013496 -127268993 + LTR35 LTR ERV1 133 547 -9 2438 202 38 35 chr12 17013873 17014032 -127268457 + L1MC/D LINE L1 4697 4854 -1505 2281 85 0 19 chr12 17014032 17014339 -127268150 - AluY SINE Alu -10 301 1 2438 202 38 35 chr12 17014339 17015067 -127267422 + L1MC/D LINE L1 4854 5589 -770 1615 132 85 34 chr12 17015067 17015362 -127267127 + AluSq SINE Alu 1 310 -3 2438 202 38 35 chr12 17015362 17015551 -127266938 + L1MC/D LINE L1 5589 5776 -583 887 173 48 43 chr12 17015568 17015683 -127266806 - L1M3 LINE L1 -671 5500 5387 1721 148 59 7 chr12 17015683 17015973 -127266516 - AluJo SINE Alu -7 305 1 887 173 48 43 chr12 17015973 17016285 -127266204 - L1M3 LINE L1 -784 5387 5095 596 221 7 7 chr12 17016287 17016436 -127266053 - L1M3 LINE L1 -1205 4941 4793 4052 213 24 32 chr12 17016440 17017173 -127265316 - L1M3 LINE L1 -2105 4041 3303 2444 77 0 10 chr12 17017173 17017484 -127265005 - AluY SINE Alu -3 308 1 4052 213 24 32 chr12 17017484 17017926 -127264563 - L1M3 LINE L1 -2843 3303 2875 2241 110 0 0 chr12 17017926 17018218 -127264271 + AluSg SINE Alu 1 292 -18 4052 213 24 32 chr12 17018218 17018301 -127264188 - L1M3 LINE L1 -3271 2875 2793 705 204 40 62 chr12 17018307 17018551 -127263938 - MLT1E1 LTR MaLR -355 238 5 628 285 99 7 chr12 17018838 17019122 -127263367 - L1ME3A LINE L1 -296 5874 5565 1158 209 0 5 chr12 17019123 17019334 -127263155 + AluJb SINE Alu 87 296 -16 259 312 91 0 chr12 17019358 17019512 -127262977 - L1P5 LINE L1 -635 5521 5354 612 318 86 3 chr12 17019519 17019843 -127262646 - L1ME3A LINE L1 -865 5281 4931 2324 97 3 0 chr12 17019915 17020213 -127262276 - AluSx SINE Alu -13 299 1 314 367 42 5 chr12 17020228 17020443 -127262046 - L1ME3A LINE L1 -1322 4824 4602 1295 260 56 14 chr12 17020485 17021000 -127261489 + L1PB1 LINE L1 15 551 -6312 3887 126 102 82 chr12 17021080 17022424 -127260065 + pTR5 LTR ERV1 741 2438 0 6267 160 32 4 chr12 17022426 17024127 -127258362 + L1PB1 LINE L1 663 2587 -4276 680 187 0 0 chr12 17024126 17024260 -127258229 + L1PB1 LINE L1 4567 4700 -2162 * 5745 106 18 7 chr12 17024267 17025302 -127257187 + L1PB1 LINE L1 5820 6865 -2 339 245 20 66 chr12 17025337 17025391 -127257098 - L1ME3A LINE L1 -1529 4617 4562 1729 161 87 22 chr12 17025391 17025757 -127256732 - MLT1B LTR MaLR 0 390 1 339 245 20 66 chr12 17025757 17025853 -127256636 - L1ME3A LINE L1 -1584 4562 4474 522 283 29 0 chr12 17025925 17026063 -127256426 + LTR33 LTR ERVL 30 171 -350 379 231 0 10 chr12 17026253 17026357 -127256132 + LTR33 LTR ERVL 404 506 -15 254 147 84 11 chr12 17026373 17026468 -127256021 - L1ME3A LINE L1 -1722 4424 4323 207 0 0 0 chr12 17026484 17026507 -127255982 + (CAA)n Simple_repeat Simple_repeat 2 24 0 304 197 15 0 chr12 17026519 17026585 -127255904 + FAM SINE Alu 113 179 0 1681 175 3 29 chr12 17026625 17026939 -127255550 - AluJo SINE Alu -6 306 1 457 276 132 4 chr12 17027026 17027276 -127255213 - L1ME3A LINE L1 -2014 4132 3851 235 333 72 18 chr12 17027530 17027641 -127254848 - L2 LINE L2 0 3272 3156 297 217 152 11 chr12 17027881 17027973 -127254516 - L2 LINE L2 -17 3296 3192 29 28 0 0 chr12 17028100 17028136 -127254353 + AT_rich Low_complexity Low_complexity 1 36 0 941 149 6 12 chr12 17028438 17028599 -127253890 - AluJb SINE Alu -14 298 139 203 114 57 0 chr12 17029096 17029131 -127253358 + CT-rich Low_complexity Low_complexity 3 39 0 202 281 78 0 chr12 17029858 17029922 -127252567 - MIR SINE MIR -111 151 83 209 294 73 15 chr12 17030526 17030594 -127251895 - MER5A DNA MER1_type -85 104 33 200 59 29 0 chr12 17030721 17030755 -127251734 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 274 233 81 23 chr12 17031050 17031136 -127251353 - MER5B DNA MER1_type -1 177 87 40 67 0 0 chr12 17031143 17031218 -127251271 + AT_rich Low_complexity Low_complexity 1 75 0 420 246 105 9 chr12 17031219 17031333 -127251156 - FLAM_A SINE Alu -7 126 2 191 159 0 45 chr12 17031335 17031379 -127251110 - MER5B DNA MER1_type -77 101 60 2351 104 0 0 chr12 17031816 17032124 -127250365 - AluSx SINE Alu -4 308 1 370 251 299 24 chr12 17032339 17032506 -127249983 + MIR SINE MIR 13 225 -37 1452 180 33 0 chr12 17032832 17033076 -127249413 - AluJb SINE Alu -15 297 46 293 306 14 0 chr12 17033157 17033229 -127249260 + L2 LINE L2 3190 3262 -10 559 178 75 0 chr12 17034370 17034477 -127248012 + FLAM_A SINE Alu 12 126 -16 189 383 101 28 chr12 17034791 17035008 -127247481 - L2 LINE L2 -228 3044 2812 25 0 0 0 chr12 17035509 17035534 -127246955 + AT_rich Low_complexity Low_complexity 1 25 0 203 171 0 0 chr12 17035840 17035875 -127246614 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 27 0 0 0 chr12 17036122 17036149 -127246340 + AT_rich Low_complexity Low_complexity 1 27 0 2471 82 0 16 chr12 17037413 17037728 -127244761 + AluSq SINE Alu 1 310 -3 392 282 46 72 chr12 17038044 17038296 -127244193 - L1ME4a LINE L1 -266 5855 5611 2167 88 27 10 chr12 17038296 17038592 -127243897 + AluSq SINE Alu 1 301 -12 392 282 46 72 chr12 17038592 17038644 -127243845 - L1ME4a LINE L1 -510 5611 5559 26 0 0 0 chr12 17039025 17039051 -127243438 + AT_rich Low_complexity Low_complexity 1 26 0 301 188 62 0 chr12 17039633 17039697 -127242792 - MIR SINE MIR -106 156 89 200 224 49 21 chr12 17040004 17040147 -127242342 + (TTATA)n Simple_repeat Simple_repeat 1 147 0 261 196 27 65 chr12 17040164 17040348 -127242141 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 1961 137 10 0 chr12 17040813 17041106 -127241383 + AluSx SINE Alu 1 296 -16 1291 181 8 13 chr12 17041242 17041479 -127241010 + MER46A DNA MER2_type 1 236 0 1533 169 68 20 chr12 17042230 17042525 -127239964 + AluJb SINE Alu 1 309 -3 2073 130 0 35 chr12 17042576 17042892 -127239597 + AluSx SINE Alu 1 305 -7 290 304 0 51 chr12 17043354 17043492 -127238997 - L1ME LINE L1 -448 5673 5543 24 0 0 0 chr12 17044078 17044102 -127238387 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 17045388 17045411 -127237078 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 17046781 17046805 -127235684 + AT_rich Low_complexity Low_complexity 1 24 0 2192 89 31 0 chr12 17046885 17047176 -127235313 + AluSg SINE Alu 1 300 -10 247 331 92 0 chr12 17047937 17048067 -127234422 - L2 LINE L2 -213 3059 2918 254 319 91 61 chr12 17048172 17048289 -127234200 - L2 LINE L2 -491 2823 2711 1725 114 0 0 chr12 17048289 17048516 -127233973 + AluSg/x SINE Alu 76 302 -10 254 319 91 61 chr12 17048516 17048616 -127233873 - L2 LINE L2 -603 2711 2615 2208 100 10 0 chr12 17048616 17048907 -127233582 - AluSg SINE Alu -16 294 1 254 319 91 61 chr12 17048907 17049030 -127233459 - L2 LINE L2 -699 2615 2472 207 0 0 0 chr12 17049521 17049544 -127232945 + (T)n Simple_repeat Simple_repeat 1 23 0 394 234 160 62 chr12 17050362 17050606 -127231883 - HAL1b LINE L1 -2 1346 1079 2437 179 42 38 chr12 17051175 17051678 -127230811 - MLT1D LTR MaLR 0 505 1 692 308 224 28 chr12 17051728 17051842 -127230647 + L2 LINE L2 1923 2013 -1300 2417 81 0 3 chr12 17051842 17052138 -127230351 - AluSc SINE Alu -13 296 2 692 308 224 28 chr12 17052138 17052945 -127229544 + L2 LINE L2 2013 3017 -296 314 289 66 16 chr12 17054227 17054348 -127228141 - MIR SINE MIR -45 217 91 284 276 95 0 chr12 17055150 17055255 -127227234 - L2 LINE L2 0 3313 3199 372 325 65 6 chr12 17055562 17055731 -127226758 - MER5A DNA MER1_type -2 187 9 1802 194 149 8 chr12 17056150 17056654 -127225835 - MER90 LTR ERV1 0 575 1 284 321 161 12 chr12 17056843 17057011 -127225478 - MIR SINE MIR -12 250 58 573 247 118 11 chr12 17057353 17057531 -127224958 - MIR3 SINE MIR -3 205 9 3392 16 0 6 chr12 17058652 17059017 -127223472 - SVA Other Other 0 1386 1024 612 252 57 10 chr12 17059108 17059301 -127223188 + MIR SINE MIR 43 246 -16 233 227 0 0 chr12 17060166 17060232 -127222257 - L1ME4a LINE L1 -4 6117 6052 411 231 0 0 chr12 17060435 17060513 -127221976 + MER5A DNA MER1_type 112 189 0 460 227 31 70 chr12 17060627 17060734 -127221755 + L2 LINE L2 3191 3294 -19 2017 144 6 28 chr12 17060734 17061053 -127221436 + AluSx SINE Alu 1 312 0 460 227 31 70 chr12 17061053 17061073 -127221416 + L2 LINE L2 3294 3313 0 186 229 82 0 chr12 17061286 17061347 -127221142 + MIR3 SINE MIR 131 196 -12 1558 111 0 9 chr12 17061413 17061630 -127220859 - AluSg/x SINE Alu -14 296 82 217 277 119 30 chr12 17061654 17061755 -127220734 - L2 LINE L2 -3 3310 3201 231 36 0 0 chr12 17062077 17062105 -127220384 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 704 194 0 0 chr12 17062106 17062230 -127220259 - AluSq/x SINE Alu -189 124 1 260 221 29 29 chr12 17062294 17062362 -127220127 - L2 LINE L2 -21 3292 3225 * 645 262 69 35 chr12 17062360 17062562 -127219927 - MIR SINE MIR -20 242 34 2408 98 0 0 chr12 17063078 17063385 -127219104 - AluSx SINE Alu -4 308 2 605 198 9 9 chr12 17063430 17063546 -127218943 - FLAM_A SINE Alu -26 116 1 489 356 16 11 chr12 17064113 17064304 -127218185 - MIR SINE MIR -51 211 20 394 146 11 56 chr12 17064314 17064403 -127218086 - Charlie3 DNA MER1_type -8 2702 2618 1143 238 99 3 chr12 17064403 17064735 -127217754 - L1MC4 LINE L1 -1153 6889 6526 27 49 0 0 chr12 17065180 17065221 -127217268 + AT_rich Low_complexity Low_complexity 1 41 0 244 227 61 129 chr12 17065227 17065359 -127217130 - L2 LINE L2 -9 3263 3141 21 36 0 0 chr12 17065885 17065913 -127216576 + AT_rich Low_complexity Low_complexity 1 28 0 291 28 0 0 chr12 17066596 17066606 -127215883 + (TG)n Simple_repeat Simple_repeat 1 46 0 291 28 0 0 chr12 17066606 17066642 -127215847 + (TG)n Simple_repeat Simple_repeat 1 36 0 425 303 84 0 chr12 17066885 17067027 -127215462 - MIR3 SINE MIR -11 197 44 274 200 0 33 chr12 17067101 17067161 -127215328 - MER5A DNA MER1_type -16 173 116 2126 86 3 31 chr12 17067188 17067480 -127215009 + AluSc SINE Alu 1 284 -25 204 322 0 35 chr12 17067482 17067569 -127214920 - MER5B DNA MER1_type -70 108 25 2068 119 7 14 chr12 17068275 17068561 -127213928 + AluSq SINE Alu 1 284 -29 27 0 0 0 chr12 17068562 17068589 -127213900 + AT_rich Low_complexity Low_complexity 1 27 0 208 342 61 26 chr12 17068696 17068810 -127213679 - L2 LINE L2 -2 3311 3194 952 138 7 0 chr12 17069484 17069636 -127212853 + L1MC1 LINE L1 6166 6318 -15 2824 10 0 0 chr12 17069646 17069957 -127212532 - AluYa5 SINE Alu 0 311 1 1137 224 126 0 chr12 17070781 17071036 -127211453 + AluJo SINE Alu 1 287 -25 480 258 93 27 chr12 17071137 17071343 -127211146 + MIR SINE MIR 37 262 0 2281 87 23 7 chr12 17072458 17072758 -127209731 - AluSx SINE Alu -7 305 1 739 199 0 0 chr12 17072830 17072961 -127209528 - FLAM_A SINE Alu -2 131 1 2591 35 0 3 chr12 17073090 17073401 -127209088 + AluY SINE Alu 1 310 -1 622 232 67 0 chr12 17073484 17073648 -127208841 + MER105 DNA DNA 30 204 0 315 302 122 0 chr12 17073815 17073954 -127208535 - MIR SINE MIR 0 262 107 244 310 30 50 chr12 17074259 17074359 -127208130 - MIR SINE MIR -149 113 16 1383 154 53 0 chr12 17074644 17074910 -127207579 - L1MA7 LINE L1 -5 6286 6007 321 265 43 9 chr12 17076570 17076755 -127205734 + MIR SINE MIR 20 247 -15 1835 144 58 120 chr12 17078254 17078739 -127203750 + MSTB2 LTR MaLR 1 455 -2 1744 166 39 7 chr12 17079004 17079288 -127203201 + AluJb SINE Alu 1 293 -19 3319 145 46 6 chr12 17079331 17079957 -127202532 - L1MA8 LINE L1 -136 6155 5505 302 240 0 21 chr12 17079962 17080058 -127202431 - HAL1 LINE L1 -1244 1263 1170 212 369 107 7 chr12 17080301 17080450 -127202039 + L2 LINE L2 2891 3054 -218 193 200 29 0 chr12 17080466 17080501 -127201988 - MIR SINE MIR -132 76 41 2318 80 7 10 chr12 17080940 17081241 -127201248 + AluY SINE Alu 1 300 -11 2137 139 0 0 chr12 17081840 17082135 -127200354 + AluJb SINE Alu 1 295 -17 2335 229 43 4 chr12 17082363 17082875 -127199614 - MLT1F LTR MaLR -7 535 4 433 300 53 79 chr12 17082943 17083360 -127199129 - L1MC4 LINE L1 -16 8026 7621 347 299 37 13 chr12 17083404 17083476 -127199013 - L1MC5 LINE L1 -525 7495 7426 912 114 0 0 chr12 17083476 17083616 -127198873 + (TCCTG)n Simple_repeat Simple_repeat 4 143 0 1532 193 65 4 chr12 17083616 17083891 -127198598 - AluJo SINE Alu -20 292 1 347 299 37 13 chr12 17083891 17084249 -127198240 - L1MC5 LINE L1 -593 7427 7167 240 313 35 61 chr12 17084516 17084631 -127197858 - L2 LINE L2 -2 3270 3159 27 29 0 0 chr12 17084907 17084941 -127197548 + AT_rich Low_complexity Low_complexity 1 34 0 1321 188 58 26 chr12 17085180 17085557 -127196932 + MER114 LTR ERV 1 389 -259 345 189 87 87 chr12 17085557 17085684 -127196805 + MLT1H1 LTR MaLR 1 127 -415 439 232 85 31 chr12 17085813 17086044 -127196445 + MLT1H1 LTR MaLR 290 537 -12 468 242 90 22 chr12 17086059 17086282 -127196207 + MER114 LTR ERV 411 648 0 2128 114 0 7 chr12 17086965 17087286 -127195203 - AluSc SINE Alu 0 309 1 198 71 0 0 chr12 17087511 17087539 -127194950 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 5632 134 19 6 chr12 17088015 17089250 -127193239 - L1PB2 LINE L1 0 6151 4899 228 224 0 17 chr12 17089537 17089595 -127192894 + MER94 DNA DNA 78 134 0 357 275 50 17 chr12 17089999 17090119 -127192370 + L2 LINE L2 2640 2763 -551 341 266 53 35 chr12 17090162 17090331 -127192158 + MER112 DNA MER1_type 7 178 -82 315 0 0 0 chr12 17090341 17090376 -127192113 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 39433 60 7 1 chr12 17090376 17096473 -127186016 - L1PA5 LINE L1 -12 6142 11 262 300 22 0 chr12 17096483 17096573 -127185916 + MER112 DNA MER1_type 160 251 -9 527 314 174 23 chr12 17096578 17096706 -127185783 + L2 LINE L2 2804 2911 -402 4284 74 4 2 chr12 17096706 17097259 -127185230 - MER41A LTR ERV1 0 554 1 527 314 174 23 chr12 17097259 17097573 -127184916 + L2 LINE L2 2911 3313 0 465 317 34 10 chr12 17097656 17097864 -127184625 - MER115 DNA AcHobo -440 253 41 387 283 92 72 chr12 17098241 17098532 -127183957 - L1ME4a LINE L1 -4 6117 5802 2322 103 3 0 chr12 17098532 17098834 -127183655 - AluSg SINE Alu -7 303 1 387 283 92 72 chr12 17098834 17098997 -127183492 - L1ME4a LINE L1 -319 5802 5644 1232 178 43 10 chr12 17099111 17099415 -127183074 - MER33 DNA MER1_type -9 315 2 675 169 64 87 chr12 17099579 17099751 -127182738 - MER20 DNA MER1_type 0 219 52 187 378 88 42 chr12 17100060 17100277 -127182212 + L3b LINE CR1 1298 1524 -59 187 352 84 14 chr12 17100323 17100465 -127182024 + L3b LINE CR1 1185 1336 -247 504 295 80 40 chr12 17101025 17101327 -127181162 - L2 LINE L2 -155 3117 2804 2131 113 10 0 chr12 17101653 17101946 -127180543 + AluSx SINE Alu 1 296 -16 283 128 0 0 chr12 17103319 17103366 -127179123 - MADE1 DNA Mariner -1 79 33 367 338 83 6 chr12 17105499 17105656 -127176833 - MIR3 SINE MIR -6 202 34 320 254 91 9 chr12 17106821 17106931 -127175558 - L1MC4 LINE L1 -1336 6706 6588 2320 107 3 0 chr12 17106991 17107299 -127175190 + AluSx SINE Alu 1 309 -3 302 304 107 64 chr12 17107373 17107785 -127174704 - L2 LINE L2 -216 3056 2629 600 179 81 8 chr12 17108028 17108151 -127174338 + FLAM_C SINE Alu 1 132 -11 2158 132 0 7 chr12 17108376 17108679 -127173810 - AluSx SINE Alu -11 301 1 189 250 0 0 chr12 17109377 17109437 -127173052 + CT-rich Low_complexity Low_complexity 3 62 0 611 223 141 92 chr12 17110625 17110952 -127171537 - MLT1J LTR MaLR -76 435 93 1537 68 14 27 chr12 17111931 17112152 -127170337 - L1PA10 LINE L1 -11 6157 5940 331 321 130 36 chr12 17112276 17112715 -127169774 + L2 LINE L2 1288 1767 -1547 374 182 0 0 chr12 17112717 17112793 -127169696 + AluSx SINE Alu 1 57 -244 1645 151 0 0 chr12 17112877 17113116 -127169373 + AluSx SINE Alu 61 299 -13 303 344 77 18 chr12 17113168 17113389 -127169100 + L2 LINE L2 1896 2129 -1185 1487 124 0 113 chr12 17113703 17113986 -127168503 + AluJb SINE Alu 1 251 -61 216 0 0 0 chr12 17114056 17114080 -127168409 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr12 17114120 17114149 -127168340 + AT_rich Low_complexity Low_complexity 1 29 0 483 310 121 6 chr12 17115202 17115376 -127167113 + MIR SINE MIR 13 206 -56 321 333 47 29 chr12 17115514 17115685 -127166804 + MIR3 SINE MIR 34 207 -1 24 0 0 0 chr12 17117162 17117186 -127165303 + AT_rich Low_complexity Low_complexity 1 24 0 2424 94 0 3 chr12 17118144 17118453 -127164036 - AluSq SINE Alu -5 308 1 636 246 47 19 chr12 17120203 17120459 -127162030 + L1ME4a LINE L1 5669 5931 -190 4511 184 67 92 chr12 17120559 17121675 -127160814 - L1MC4 LINE L1 -1 8041 6977 4698 109 4 24 chr12 17121675 17122379 -127160110 - LTR8 LTR ERV1 0 691 2 4511 184 67 92 chr12 17122379 17122884 -127159605 - L1MC4 LINE L1 -1065 6977 6461 276 264 88 11 chr12 17123438 17123529 -127158960 - MIR SINE MIR -74 134 37 206 388 12 0 chr12 17124005 17124085 -127158404 + MIR SINE MIR 43 123 -85 2263 111 0 16 chr12 17124086 17124393 -127158096 - AluSq SINE Alu -11 302 1 269 269 194 32 chr12 17125070 17125256 -127157233 - MIR SINE MIR -17 245 30 650 321 57 24 chr12 17125481 17125727 -127156762 - MIR SINE MIR -6 256 3 551 295 133 21 chr12 17126767 17127001 -127155488 - MIR SINE MIR -2 260 1 2372 87 0 0 chr12 17127702 17128011 -127154478 + AluY SINE Alu 1 309 -2 632 354 91 20 chr12 17129547 17130159 -127152330 + L2 LINE L2 2397 3054 -218 264 316 20 31 chr12 17131205 17131303 -127151186 - MIR SINE MIR -153 109 13 258 286 45 13 chr12 17131608 17131626 -127150863 - L1MA10 LINE L1 0 6334 6317 599 208 56 81 chr12 17131626 17131910 -127150579 - L1ME2 LINE L1 -9 6155 5879 2076 244 78 46 chr12 17131981 17133866 -127148623 - L1MEc LINE L1 -2758 3457 1632 2369 114 0 0 chr12 17133866 17134172 -127148317 - AluSx SINE Alu -6 306 1 2076 244 78 46 chr12 17134172 17134361 -127148128 - L1MEc LINE L1 -4583 1632 1450 7412 171 151 39 chr12 17134361 17135939 -127146550 - MER52A LTR ERV1 0 1755 1 2076 244 78 46 chr12 17135939 17136185 -127146304 - L1MEc LINE L1 -4765 1450 880 180 77 0 0 chr12 17137056 17137082 -127145407 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6181 95 13 0 chr12 17137085 17138070 -127144419 - L1PA13 LINE L1 -1 6162 5175 422 275 28 0 chr12 17138291 17138400 -127144089 - MIR SINE MIR -1 261 150 27 29 0 0 chr12 17139930 17139964 -127142525 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr12 17140116 17140142 -127142347 + AT_rich Low_complexity Low_complexity 1 26 0 185 333 0 0 chr12 17140776 17140821 -127141668 + L2 LINE L2 3218 3262 -10 2487 51 0 0 chr12 17141096 17141388 -127141101 - AluY SINE Alu -19 292 1 415 269 83 2 chr12 17141572 17141720 -127140769 - MIR SINE MIR -67 141 4 355 357 63 40 chr12 17142343 17142643 -127139846 + L3 LINE CR1 1129 1435 -142 315 0 0 0 chr12 17142793 17142828 -127139661 + (TG)n Simple_repeat Simple_repeat 2 36 0 1529 215 66 18 chr12 17142897 17143334 -127139155 - MLT1C LTR MaLR 0 467 10 303 252 0 137 chr12 17144604 17144712 -127137777 - MIR SINE MIR -56 152 63 353 251 11 99 chr12 17144712 17144903 -127137586 - MER5B DNA MER1_type -4 174 1 303 252 0 137 chr12 17144903 17144925 -127137564 - MIR SINE MIR -145 63 40 2072 107 4 0 chr12 17144947 17145252 -127137237 - AluSx SINE Alu 0 306 1 228 302 0 0 chr12 17145862 17145915 -127136574 - L2 LINE L2 -14 3299 3247 186 43 0 0 chr12 17146400 17146423 -127136066 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 640 49 0 0 chr12 17147800 17147881 -127134608 + L1PA8A LINE L1 6018 6098 -33 2019 40 4 0 chr12 17148619 17148866 -127133623 - L1PA4 LINE L1 0 6155 5908 28 0 0 0 chr12 17149099 17149127 -127133362 + AT_rich Low_complexity Low_complexity 1 28 0 667 183 120 26 chr12 17149127 17149318 -127133171 - L1MA9 LINE L1 -35 6277 6069 2070 185 21 16 chr12 17149634 17150066 -127132423 - MLT1C LTR MaLR -33 434 1 25 31 0 0 chr12 17151381 17151413 -127131076 + AT_rich Low_complexity Low_complexity 1 32 0 1681 164 0 29 chr12 17151796 17152077 -127130412 + AluJo SINE Alu 1 273 -39 184 313 169 66 chr12 17153252 17153418 -127129071 + L2 LINE L2 3075 3257 -15 266 236 0 0 chr12 17153631 17153686 -127128803 + MIR SINE MIR 197 251 -11 2079 151 0 0 chr12 17153807 17154119 -127128370 - AluSx SINE Alu 0 312 1 272 0 79 0 chr12 17154468 17154506 -127127983 + T-rich Low_complexity Low_complexity 5 45 0 1914 138 0 7 chr12 17154506 17154788 -127127701 - AluSx SINE Alu -32 280 1 250 171 0 0 chr12 17155373 17155414 -127127075 - MLT1L LTR MaLR -221 394 354 303 296 164 6 chr12 17155585 17155744 -127126745 + MIR SINE MIR 9 192 -70 1228 132 66 31 chr12 17157935 17158163 -127124326 - MER46A DNA MER2_type 0 236 1 288 301 12 0 chr12 17158715 17158798 -127123691 + L2 LINE L2 3186 3269 -3 709 194 157 8 chr12 17159414 17159662 -127122827 - MER33 DNA MER1_type -32 292 8 2179 141 21 24 chr12 17159896 17160272 -127122217 + THE1C LTR MaLR 1 375 0 11028 97 12 28 chr12 17160272 17161877 -127120612 + THE1C-int LTR MaLR 1 1580 0 2101 136 24 27 chr12 17161877 17162253 -127120236 + THE1C LTR MaLR 1 375 0 314 146 10 126 chr12 17162574 17162677 -127119812 - L1MB7 LINE L1 -19 6165 6075 2168 128 26 0 chr12 17163153 17163457 -127119032 + AluJb SINE Alu 1 312 0 41 36 0 0 chr12 17165410 17165465 -127117024 + AT_rich Low_complexity Low_complexity 1 55 0 2117 146 38 8 chr12 17166436 17166807 -127115682 + MSTB LTR MaLR 1 382 -44 1253 150 191 24 chr12 17166816 17167110 -127115379 - MSTA LTR MaLR -85 343 1 349 135 0 0 chr12 17167110 17167158 -127115331 + MSTB LTR MaLR 379 426 0 7739 173 90 11 chr12 17167158 17168688 -127113801 + MSTB-int LTR MaLR 1 1651 0 2675 135 49 5 chr12 17168688 17169096 -127113393 + MSTB LTR MaLR 1 426 0 4758 217 92 80 chr12 17169185 17170109 -127112380 + L1MCa LINE L1 16 928 -5498 2822 3 0 0 chr12 17170109 17170412 -127112077 - AluYa5 SINE Alu -8 303 1 4758 217 92 80 chr12 17170412 17173965 -127108524 + L1MCa LINE L1 928 4465 -1961 1169 233 164 32 chr12 17173967 17174405 -127108084 + MLT1D LTR MaLR 3 498 -7 531 269 90 0 chr12 17174410 17174611 -127107878 + L1MCa LINE L1 4459 4677 -1749 4987 175 56 22 chr12 17174630 17175778 -127106711 + L1MC3 LINE L1 6599 7785 0 2158 29 44 18 chr12 17175788 17176098 -127106391 + AluY SINE Alu 1 317 0 348 304 160 0 chr12 17176227 17176352 -127106137 - L2 LINE L2 -1 3271 3127 2360 91 0 35 chr12 17176549 17176867 -127105622 - AluSg SINE Alu -3 307 1 773 252 152 29 chr12 17177158 17177507 -127104982 + L2 LINE L2 2922 3313 0 234 256 0 0 chr12 17177797 17177840 -127104649 - MIR SINE MIR -138 70 28 366 255 21 0 chr12 17178129 17178223 -127104266 - MER5A DNA MER1_type -80 109 14 580 266 64 46 chr12 17178329 17178547 -127103942 + MIR SINE MIR 38 259 -3 387 0 0 0 chr12 17180217 17180260 -127102229 + (TG)n Simple_repeat Simple_repeat 2 44 0 233 288 91 53 chr12 17180676 17180808 -127101681 - MER5B DNA MER1_type -2 176 51 227 257 29 57 chr12 17180849 17180919 -127101570 - L2 LINE L2 -1 3271 3204 187 250 0 0 chr12 17181629 17181677 -127100812 + MIR SINE MIR 51 98 -164 216 321 47 65 chr12 17181679 17181894 -127100595 - L2 LINE L2 -667 2647 2437 23 0 0 0 chr12 17183448 17183471 -127099018 + AT_rich Low_complexity Low_complexity 1 23 0 25 83 0 0 chr12 17183899 17183959 -127098530 + AT_rich Low_complexity Low_complexity 1 60 0 386 273 43 43 chr12 17184264 17184403 -127098086 - MIR SINE MIR -100 162 24 511 283 13 0 chr12 17184702 17184854 -127097635 + MIR3 SINE MIR 49 202 -6 404 243 104 21 chr12 17185785 17185929 -127096560 - MIR3 SINE MIR -9 199 44 469 250 104 26 chr12 17187269 17187461 -127095028 + L3b LINE CR1 1178 1384 -199 794 183 112 6 chr12 17187557 17187726 -127094763 - MER5A DNA MER1_type -1 188 2 297 214 117 84 chr12 17188349 17188454 -127094035 - LTR67 LTR ERVL -12 545 432 2340 157 65 2 chr12 17188454 17188855 -127093634 - MSTA LTR MaLR -2 426 1 297 214 117 84 chr12 17188855 17188903 -127093586 - LTR67 LTR ERVL -125 432 387 255 83 0 0 chr12 17188914 17188950 -127093539 + U2 snRNA snRNA 1 36 -152 310 326 0 0 chr12 17189086 17189178 -127093311 - LTR67 LTR ERVL -385 172 81 2444 63 0 7 chr12 17189622 17189925 -127092564 - AluY SINE Alu -10 301 1 878 262 178 22 chr12 17189978 17190612 -127091877 - HAL1b LINE L1 -475 873 141 720 286 66 9 chr12 17193539 17193766 -127088723 - MIR SINE MIR -13 249 10 232 290 0 43 chr12 17193827 17193896 -127088593 - L3 LINE CR1 -3 1574 1509 3888 189 39 22 chr12 17194831 17195472 -127087017 + MER4D LTR ERV1 1 629 -274 2589 114 62 5 chr12 17195472 17195877 -127086612 + MSTA LTR MaLR 1 428 0 3888 189 39 22 chr12 17195877 17195904 -127086585 + MER4D LTR ERV1 629 654 -249 1481 203 54 135 chr12 17195904 17196570 -127085919 + LTR9 LTR ERV1 1 612 0 3888 189 39 22 chr12 17196570 17196772 -127085717 + MER4D LTR ERV1 654 887 -16 2198 113 0 3 chr12 17196931 17197215 -127085274 + AluSq SINE Alu 1 283 -30 1686 72 0 0 chr12 17197643 17197852 -127084637 + AluY SINE Alu 97 305 -6 1131 212 45 38 chr12 17197905 17198193 -127084296 + Charlie1b DNA MER1_type 5 294 -229 489 156 0 0 chr12 17198207 17198297 -127084192 + Charlie1b DNA MER1_type 428 517 -6 286 254 36 17 chr12 17198369 17198486 -127084003 + L1ME LINE L1 5467 5585 -536 1360 164 0 27 chr12 17198500 17198720 -127083769 + AluJo SINE Alu 1 214 -98 258 188 0 0 chr12 17198721 17198769 -127083720 + L1 LINE L1 3586 3633 -2513 21 0 0 0 chr12 17198772 17198793 -127083696 + AT_rich Low_complexity Low_complexity 1 21 0 2115 134 0 0 chr12 17198793 17199091 -127083398 - AluSx SINE Alu -14 298 1 9380 156 32 83 chr12 17199097 17201641 -127080848 + L1PA13 LINE L1 3627 6159 -4 1257 136 0 20 chr12 17201625 17201823 -127080666 + AluJb SINE Alu 118 311 -1 4795 133 32 45 chr12 17201823 17202112 -127080377 + L1MA4 LINE L1 5322 5613 -687 1573 98 0 0 chr12 17202112 17202317 -127080172 + AluSp SINE Alu 106 310 -3 4795 133 32 45 chr12 17202317 17203015 -127079474 + L1MA4 LINE L1 5613 6297 -3 4005 121 180 81 chr12 17203835 17205256 -127077233 + pTR5 LTR ERV1 743 2438 0 1905 101 78 46 chr12 17206636 17206984 -127075505 + MER46B DNA MER2_type 3 236 0 317 293 106 43 chr12 17207003 17207419 -127075070 - MLT1K LTR MaLR -36 552 111 187 365 58 19 chr12 17207625 17207781 -127074708 - L2 LINE L2 -824 2490 2329 227 294 112 49 chr12 17208553 17208696 -127073793 + L2 LINE L2 3101 3252 -20 1001 268 28 12 chr12 17208835 17209085 -127073404 + MIR SINE MIR 2 255 -7 669 222 36 5 chr12 17209353 17209547 -127072942 + L1MD3 LINE L1 7796 7995 0 321 279 203 33 chr12 17209607 17210335 -127072154 + L1ME4a LINE L1 5269 6120 -1 588 214 26 17 chr12 17210631 17210748 -127071741 + FLAM_A SINE Alu 5 122 -11 242 294 143 16 chr12 17210749 17210875 -127071614 + MIR SINE MIR 114 255 -7 415 280 42 28 chr12 17211127 17211270 -127071219 + L2 LINE L2 3169 3313 0 700 197 0 7 chr12 17211493 17211645 -127070844 - MER63 DNA MER1_type 0 1061 911 289 141 47 94 chr12 17211675 17211721 -127070768 - MER63 DNA MER1_type -129 707 660 2249 119 0 3 chr12 17211721 17212023 -127070466 - AluSg SINE Alu -8 302 2 289 141 47 94 chr12 17212023 17212061 -127070428 - MER63 DNA MER1_type -176 660 1 254 155 35 0 chr12 17212475 17212533 -127069956 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 1915 242 41 37 chr12 17213167 17214123 -127068366 - L1ME2 LINE L1 -2 6295 5370 695 246 20 15 chr12 17215062 17215261 -127067228 - MARNA DNA Mariner -18 568 369 328 280 51 25 chr12 17215661 17215818 -127066671 - MARNA DNA Mariner -228 358 198 240 274 83 0 chr12 17215876 17215960 -127066529 - MLT1I LTR MaLR -73 336 246 21 36 0 0 chr12 17216314 17216342 -127066147 + AT_rich Low_complexity Low_complexity 1 28 0 264 241 0 17 chr12 17217401 17217459 -127065030 + L2 LINE L2 3007 3063 -209 443 314 136 34 chr12 17217501 17217737 -127064752 - MIR SINE MIR -1 261 2 613 174 0 0 chr12 17217805 17217914 -127064575 - MER45B DNA AcHobo -368 672 564 962 179 19 82 chr12 17217914 17218182 -127064307 + MLT1A1 LTR MaLR 113 363 -2 271 310 123 29 chr12 17218308 17218479 -127064010 + MIR SINE MIR 6 192 -70 180 0 0 0 chr12 17220324 17220344 -127062145 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 449 244 89 16 chr12 17220581 17220704 -127061785 - MIR SINE MIR -44 218 87 586 179 137 24 chr12 17223278 17223446 -127059043 + LTR41 LTR ERVL 1 187 -586 441 252 29 81 chr12 17223497 17223743 -127058746 + LTR41 LTR ERVL 462 694 -79 454 305 39 19 chr12 17223861 17224015 -127058474 - MER91A DNA MER1_type -22 174 18 217 345 0 0 chr12 17224069 17224127 -127058362 - L2 LINE L2 -93 3179 3122 2253 227 28 30 chr12 17224190 17224255 -127058234 - MLT1F LTR MaLR -9 533 469 2028 186 38 26 chr12 17224255 17224680 -127057809 + MSTB1 LTR MaLR 1 430 -2 2253 227 28 30 chr12 17224680 17225148 -127057341 - MLT1F LTR MaLR -73 469 1 216 135 0 0 chr12 17225992 17226029 -127056460 + (CA)n Simple_repeat Simple_repeat 2 38 0 668 253 30 36 chr12 17226333 17226638 -127055851 - AluSq SINE Alu 0 303 1 21 0 0 0 chr12 17226850 17226871 -127055618 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr12 17227007 17227042 -127055447 + GC_rich Low_complexity Low_complexity 1 35 0 29 78 0 0 chr12 17227069 17227133 -127055356 + GC_rich Low_complexity Low_complexity 1 64 0 2244 124 0 6 chr12 17227693 17228008 -127054481 - AluSq SINE Alu 0 313 1 21 0 0 0 chr12 17228214 17228235 -127054254 + AT_rich Low_complexity Low_complexity 1 21 0 213 121 0 0 chr12 17228436 17228469 -127054020 + (CA)n Simple_repeat Simple_repeat 2 34 0 973 220 31 102 chr12 17228830 17229212 -127053277 + MLT2D LTR ERVL 15 369 -45 225 91 0 0 chr12 17229232 17229265 -127053224 - MLT2D LTR ERVL 0 414 382 271 161 18 0 chr12 17229311 17229367 -127053122 + MLT2D LTR ERVL 464 520 0 399 232 92 8 chr12 17229667 17229787 -127052702 - MLT1H LTR MaLR 0 542 420 323 244 113 9 chr12 17229892 17230007 -127052482 - MLT1H LTR MaLR -307 242 116 2384 143 64 2 chr12 17230436 17230843 -127051646 + MSTB1 LTR MaLR 1 432 0 227 198 24 180 chr12 17231035 17231202 -127051287 + MIR SINE MIR 120 260 -2 2408 43 0 0 chr12 17232843 17233120 -127049369 + AluY SINE Alu 3 279 -32 207 0 0 0 chr12 17233123 17233146 -127049343 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 239 309 0 0 chr12 17233583 17233638 -127048851 + L2 LINE L2 3198 3252 -61 1041 166 0 17 chr12 17234551 17234726 -127047763 + AluJo SINE Alu 126 297 -15 560 217 32 74 chr12 17235029 17235218 -127047271 + MIR SINE MIR 12 192 -70 21 82 0 0 chr12 17235234 17235283 -127047206 + AT_rich Low_complexity Low_complexity 1 49 0 2178 128 3 3 chr12 17235433 17235739 -127046750 + AluSx SINE Alu 1 306 -6 249 108 0 0 chr12 17236127 17236164 -127046325 + (CA)n Simple_repeat Simple_repeat 1 37 0 623 169 81 16 chr12 17237834 17237958 -127044531 - FLAM_C SINE Alu 0 133 2 24 0 0 0 chr12 17238360 17238384 -127044105 + AT_rich Low_complexity Low_complexity 1 24 0 663 215 36 113 chr12 17238709 17238983 -127043506 - MER102b DNA MER1_type -5 336 84 220 91 0 55 chr12 17238984 17239039 -127043450 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 493 178 0 59 chr12 17239161 17239279 -127043210 - THE1C LTR MaLR -264 111 1 10374 111 36 8 chr12 17239279 17240816 -127041673 - THE1C-int LTR MaLR 0 1580 1 453 111 0 0 chr12 17240857 17240920 -127041569 + L1PA7 LINE L1 6077 6139 -15 463 222 6 11 chr12 17240959 17241139 -127041350 + (TA)n Simple_repeat Simple_repeat 1 179 0 1761 107 103 19 chr12 17241139 17241466 -127041023 - THE1C LTR MaLR -23 409 1 1435 206 34 3 chr12 17241466 17241762 -127040727 + MLT1A1 LTR MaLR 61 365 0 202 269 11 65 chr12 17242724 17242817 -127039672 + MIR SINE MIR 125 212 -50 2315 96 3 0 chr12 17242827 17243129 -127039360 - AluSp SINE Alu -10 303 1 555 262 14 0 chr12 17243255 17243400 -127039089 + MER58B DNA MER1_type 195 341 0 216 0 0 0 chr12 17244391 17244415 -127038074 + (T)n Simple_repeat Simple_repeat 1 24 0 327 307 112 63 chr12 17244615 17244820 -127037669 - MIR SINE MIR -24 238 24 1730 185 46 6 chr12 17245380 17245731 -127036758 - MLT1A1 LTR MaLR 0 365 1 333 258 111 35 chr12 17245983 17246461 -127036028 + L1MC4 LINE L1 7278 7893 -149 454 75 43 21 chr12 17246462 17246556 -127035933 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 288 281 9 9 chr12 17246576 17246690 -127035799 + L1MC4 LINE L1 7929 8042 0 410 239 130 57 chr12 17246701 17246931 -127035558 + L1ME3 LINE L1 5895 6141 -21 594 265 33 7 chr12 17247707 17247858 -127034631 + L2 LINE L2 3159 3313 0 570 288 55 55 chr12 17248020 17248364 -127034125 - MLT1J1 LTR MaLR 0 446 103 712 194 32 75 chr12 17248404 17248590 -127033899 + MER45A DNA AcHobo 1 178 0 5012 151 21 37 chr12 17249341 17251420 -127031069 - L1PB4 LINE L1 -2 6154 4116 1600 206 97 9 chr12 17251422 17251854 -127030635 - L1ME1 LINE L1 -298 5868 5399 1269 272 42 53 chr12 17251957 17252082 -127030407 - L1MEc LINE L1 -4712 1684 1559 1901 160 27 0 chr12 17252082 17252375 -127030114 + AluSx SINE Alu 1 301 -11 1269 272 42 53 chr12 17252375 17252496 -127029993 - L1MEc LINE L1 -4837 1559 1438 1739 167 32 35 chr12 17252496 17252808 -127029681 - AluJo SINE Alu -1 311 1 1269 272 42 53 chr12 17252808 17253116 -127029373 - L1MEc LINE L1 -4958 1438 1135 2379 110 22 27 chr12 17253116 17253481 -127029008 - THE1B LTR MaLR -1 363 1 1269 272 42 53 chr12 17253481 17253730 -127028759 - L1MEc LINE L1 -5261 1135 885 1137 264 43 14 chr12 17253762 17254133 -127028356 - L1MEc LINE L1 -5980 416 35 2334 106 0 0 chr12 17254141 17254442 -127028047 - AluSx SINE Alu -11 301 1 21 0 0 0 chr12 17255645 17255666 -127026823 + AT_rich Low_complexity Low_complexity 1 21 0 197 310 206 43 chr12 17256331 17256728 -127025761 - L2 LINE L2 -889 2425 1964 915 135 45 0 chr12 17256821 17256977 -127025512 + THE1A LTR MaLR 62 224 -131 310 279 77 5 chr12 17257110 17257318 -127025171 + L1ME4a LINE L1 5651 5873 -248 207 344 16 0 chr12 17258382 17258446 -127024043 + L2 LINE L2 3204 3268 -4 424 274 109 25 chr12 17258562 17258597 -127023892 - MIR SINE MIR 0 262 231 396 0 0 0 chr12 17258597 17258641 -127023848 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 424 274 109 25 chr12 17258641 17258806 -127023683 - MIR SINE MIR -31 231 45 24 53 0 0 chr12 17259338 17259376 -127023113 + AT_rich Low_complexity Low_complexity 1 38 0 2593 83 20 0 chr12 17259382 17259730 -127022759 + THE1A LTR MaLR 1 355 0 458 178 188 0 chr12 17259752 17259853 -127022636 - FLAM_C SINE Alu -23 120 1 500 99 0 12 chr12 17260029 17260110 -127022379 + (TA)n Simple_repeat Simple_repeat 2 81 0 2299 151 61 7 chr12 17260639 17261049 -127021440 + MSTB1 LTR MaLR 1 432 0 359 301 91 0 chr12 17261896 17262039 -127020450 - L1ME LINE L1 -422 5699 5544 262 372 69 14 chr12 17262239 17262384 -127020105 - L2 LINE L2 -4 3268 3116 656 274 65 74 chr12 17263225 17263656 -127018833 + LTR16A LTR ERVL 20 446 -4 309 196 77 115 chr12 17264226 17264435 -127018054 - L1MC5 LINE L1 -439 7522 7322 574 217 99 103 chr12 17264488 17264550 -127017939 - L1MC5 LINE L1 -1055 6906 6845 2007 132 0 0 chr12 17264550 17264868 -127017621 - AluSx SINE Alu 0 323 6 574 217 99 103 chr12 17264868 17265075 -127017414 - L1MC5 LINE L1 -1116 6845 6636 369 313 55 39 chr12 17265531 17266115 -127016374 - HAL1b LINE L1 -718 630 38 513 271 150 10 chr12 17267073 17267280 -127015209 - MIR SINE MIR -7 255 20 23 68 0 0 chr12 17267286 17267330 -127015159 + AT_rich Low_complexity Low_complexity 1 44 0 578 311 75 37 chr12 17267679 17267920 -127014569 + MIR SINE MIR 9 258 -4 474 261 45 20 chr12 17269448 17269647 -127012842 - Zaphod DNA AcHobo -2674 1357 1154 1032 214 52 18 chr12 17269654 17269986 -127012503 + MER74C LTR ERVL 2 489 -133 1285 189 59 75 chr12 17269986 17270357 -127012132 - MLT1A1 LTR MaLR 0 365 1 1032 214 52 18 chr12 17270357 17270463 -127012026 + MER74C LTR ERVL 489 590 -32 2791 226 88 67 chr12 17270486 17270633 -127011856 - Zaphod DNA AcHobo -2868 1163 1021 2065 100 0 14 chr12 17270633 17270913 -127011576 - AluSc SINE Alu -33 276 1 2791 226 88 67 chr12 17270913 17271331 -127011158 - Zaphod DNA AcHobo -3010 1021 613 855 183 4 108 chr12 17271331 17271571 -127010918 + MER20 DNA MER1_type 1 215 -4 2791 226 88 67 chr12 17271571 17272143 -127010346 - Zaphod DNA AcHobo -3418 613 1 430 195 9 18 chr12 17273006 17273119 -127009370 + CT-rich Low_complexity Low_complexity 1 112 0 220 319 118 34 chr12 17273747 17273866 -127008623 + MIR SINE MIR 71 199 -63 2447 54 0 0 chr12 17274336 17274630 -127007859 - AluY SINE Alu -17 294 1 223 321 0 0 chr12 17274818 17274871 -127007618 - MIR SINE MIR -10 252 200 512 56 0 0 chr12 17275042 17275114 -127007375 + Alu SINE Alu 236 307 -5 264 345 132 23 chr12 17275906 17276126 -127006363 - L2 LINE L2 -896 2418 2175 2391 112 0 14 chr12 17276988 17277346 -127005143 + THE1B LTR MaLR 1 353 -11 454 188 107 9 chr12 17277550 17277662 -127004827 - MER112 DNA MER1_type -27 233 111 1867 216 22 13 chr12 17277789 17278247 -127004242 + MLT1C LTR MaLR 1 462 -5 1704 195 17 66 chr12 17279054 17279360 -127003129 - MLT1C LTR MaLR 0 467 191 2270 86 0 0 chr12 17279360 17279663 -127002826 - AluSc SINE Alu 0 303 1 1704 195 17 66 chr12 17279663 17279837 -127002652 - MLT1C LTR MaLR -276 191 10 236 239 0 14 chr12 17280255 17280326 -127002163 - MLT1B LTR MaLR -183 207 138 816 286 53 0 chr12 17280820 17281065 -127001424 + MIR SINE MIR 5 262 0 1398 70 0 0 chr12 17281207 17281378 -127001111 - AluY SINE Alu -10 301 131 210 343 0 0 chr12 17282517 17282584 -126999905 - MIR3 SINE MIR -11 197 131 433 344 68 52 chr12 17282627 17282953 -126999536 + L2 LINE L2 2956 3286 -27 403 287 7 75 chr12 17283358 17283539 -126998950 + MER5B DNA MER1_type 4 184 -5 1530 162 159 14 chr12 17283670 17284016 -126998473 + MSTD LTR MaLR 1 396 0 378 228 29 59 chr12 17285535 17285671 -126996818 + MER106A DNA MER1_type 8 139 -97 185 216 0 59 chr12 17286276 17286327 -126996162 - L2 LINE L2 0 3313 3266 1609 188 15 18 chr12 17286327 17286657 -126995832 - MSTD LTR MaLR 0 396 68 1384 191 23 0 chr12 17286661 17286918 -126995571 + AluJb SINE Alu 6 268 -44 243 0 0 0 chr12 17286924 17286951 -126995538 + (CA)n Simple_repeat Simple_repeat 2 28 0 392 173 13 0 chr12 17286958 17287033 -126995456 - MSTD LTR MaLR -320 76 1 371 291 96 66 chr12 17287155 17287297 -126995192 - L1ME4a LINE L1 -294 5827 5691 2232 127 0 3 chr12 17287297 17287605 -126994884 - AluSx SINE Alu -5 307 1 371 291 96 66 chr12 17287605 17287795 -126994694 - L1ME4a LINE L1 -430 5691 5485 239 231 0 94 chr12 17288490 17288607 -126993882 - L1ME4a LINE L1 -2380 5428 5323 647 329 76 32 chr12 17290188 17290686 -126991803 - MLT1K LTR MaLR 0 588 69 286 321 164 19 chr12 17291238 17291506 -126990983 + L2 LINE L2 2167 2473 -841 656 272 126 60 chr12 17291612 17292075 -126990414 - L2 LINE L2 -31 3282 2751 2146 110 14 0 chr12 17292075 17292365 -126990124 + AluY SINE Alu 1 294 -17 656 272 126 60 chr12 17292365 17292463 -126990026 - L2 LINE L2 -562 2751 2661 1346 189 41 107 chr12 17292472 17292684 -126989805 + MLT1B LTR MaLR 1 175 -215 2272 199 22 113 chr12 17292684 17292859 -126989630 + LTR8 LTR ERV1 1 190 -501 2366 92 0 0 chr12 17292859 17293165 -126989324 - AluSx SINE Alu -6 306 1 2272 199 22 113 chr12 17293165 17293749 -126988740 + LTR8 LTR ERV1 190 691 0 1346 189 41 107 chr12 17293749 17293949 -126988540 + MLT1B LTR MaLR 175 386 -4 276 290 80 0 chr12 17293981 17294081 -126988408 - MLT1J2 LTR MaLR -65 385 278 3878 284 128 4 chr12 17295947 17297318 -126985171 - L2 LINE L2 -653 2661 1121 335 225 139 7 chr12 17297336 17297487 -126985002 - LTR50 LTR ERVL 0 795 625 560 211 193 6 chr12 17297530 17297691 -126984798 - LTR50 LTR ERVL -604 191 1 356 277 78 14 chr12 17297692 17297833 -126984656 - L2 LINE L2 -2207 1107 958 242 286 36 0 chr12 17297838 17297922 -126984567 + MER91C DNA MER1_type 54 140 0 270 85 0 0 chr12 17298855 17298902 -126983587 - L1MB4 LINE L1 0 6180 6134 278 301 55 48 chr12 17299761 17299907 -126982582 - L2 LINE L2 -69 3244 3098 904 67 0 8 chr12 17301889 17302008 -126980481 + L1PA16 LINE L1 6040 6157 -9 207 0 0 0 chr12 17303518 17303541 -126978948 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 262 259 0 0 chr12 17303544 17303598 -126978891 - L2 LINE L2 -33 3239 3186 402 313 98 0 chr12 17303780 17303943 -126978546 + MIR SINE MIR 9 187 -75 180 125 0 0 chr12 17304008 17304040 -126978449 + (CTATA)n Simple_repeat Simple_repeat 2 33 0 208 315 65 46 chr12 17304664 17304772 -126977717 - MIR SINE MIR -58 150 41 2308 105 0 3 chr12 17305116 17305422 -126977067 - AluSx SINE Alu -7 305 1 182 257 76 76 chr12 17306117 17306261 -126976228 - MER5B DNA MER1_type -5 173 30 433 264 49 28 chr12 17306294 17306438 -126976051 + MIR SINE MIR 7 153 -109 2631 219 91 30 chr12 17306446 17308086 -126974403 + L1ME2 LINE L1 4415 6170 0 338 291 19 0 chr12 17309008 17309111 -126973378 + L3 LINE CR1 1259 1363 -214 195 319 22 33 chr12 17309146 17309237 -126973252 - L3 LINE CR1 -110 1467 1378 586 272 130 0 chr12 17309274 17309458 -126973031 + MIR SINE MIR 50 257 -5 212 387 0 0 chr12 17309467 17309542 -126972947 + L3 LINE CR1 1471 1545 -32 203 356 0 0 chr12 17309949 17310008 -126972481 - L2 LINE L2 -10 3303 3245 1281 244 141 8 chr12 17310126 17310515 -126971974 - MLT1H LTR MaLR -103 446 6 383 331 53 0 chr12 17311982 17312115 -126970374 - MIR3 SINE MIR -38 170 31 26 0 0 0 chr12 17313496 17313522 -126968967 + AT_rich Low_complexity Low_complexity 1 26 0 379 323 63 21 chr12 17314152 17314341 -126968148 + MIR SINE MIR 22 218 -44 596 300 6 18 chr12 17316087 17316257 -126966232 - MER5A DNA MER1_type -21 168 1 968 260 41 8 chr12 17316535 17316777 -126965712 + MIR SINE MIR 13 262 0 891 223 33 33 chr12 17317284 17317499 -126964990 + MER20 DNA MER1_type 4 218 -1 222 118 0 0 chr12 17318126 17318160 -126964329 + (CA)n Simple_repeat Simple_repeat 2 35 0 204 239 73 12 chr12 17318864 17318987 -126963502 + MIR3 SINE MIR 47 205 -3 1848 144 0 14 chr12 17319065 17319343 -126963146 - AluJb SINE Alu -38 274 1 612 312 48 26 chr12 17320789 17321154 -126961335 + MLT1K LTR MaLR 17 422 -166 4058 206 34 59 chr12 17321207 17322272 -126960217 + MER45B DNA AcHobo 3 1040 0 1750 176 15 76 chr12 17322281 17322690 -126959799 - MLT1B LTR MaLR 0 390 7 272 242 11 55 chr12 17322697 17322788 -126959701 + MLT1K LTR MaLR 491 577 -11 23 0 0 0 chr12 17322964 17322987 -126959502 + AT_rich Low_complexity Low_complexity 1 23 0 296 245 118 0 chr12 17324080 17324182 -126958307 - MARNA DNA Mariner -38 548 435 276 333 49 0 chr12 17324099 17324201 -126958288 + MARNA DNA Mariner 64 170 -416 * 351 113 0 0 chr12 17324307 17324360 -126958129 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 252 279 184 14 chr12 17324376 17324523 -126957966 - MARNA DNA Mariner -336 250 79 342 80 0 0 chr12 17324549 17324599 -126957890 + (CA)n Simple_repeat Simple_repeat 2 51 0 209 239 0 0 chr12 17325221 17325267 -126957222 + L2 LINE L2 3224 3269 -3 183 304 98 11 chr12 17325568 17325660 -126956829 + L2 LINE L2 3151 3250 -22 1629 181 20 17 chr12 17325660 17325958 -126956531 - AluJo SINE Alu -10 302 4 220 250 36 0 chr12 17326583 17326639 -126955850 + CT-rich Low_complexity Low_complexity 3 60 0 1998 153 3 0 chr12 17326656 17326957 -126955532 - AluSx SINE Alu -10 302 1 1453 236 109 27 chr12 17327572 17328194 -126954295 - L1MC5 LINE L1 -53 7908 7236 2545 68 0 0 chr12 17328919 17329230 -126953259 - AluY SINE Alu 0 311 1 972 26 0 0 chr12 17329441 17329554 -126952935 - AluY SINE Alu -12 299 187 397 332 16 10 chr12 17329563 17329717 -126952772 - MIR SINE MIR -61 147 2 269 233 70 12 chr12 17329811 17329897 -126952592 - MER103 DNA DNA -49 117 27 398 289 56 21 chr12 17329959 17330101 -126952388 + MIR3 SINE MIR 30 176 -32 381 281 74 20 chr12 17330173 17330375 -126952114 + L2 LINE L2 2287 2499 -815 339 328 108 16 chr12 17330375 17330561 -126951928 + MIR SINE MIR 2 204 -58 256 384 53 0 chr12 17330587 17330793 -126951696 + L2 LINE L2 2511 2727 -587 708 273 13 70 chr12 17330998 17331298 -126951191 + MLT1G3 LTR MaLR 1 283 -247 342 214 0 0 chr12 17331326 17331410 -126951079 + (TG)n Simple_repeat Simple_repeat 2 85 0 201 147 0 0 chr12 17332806 17332840 -126949649 + (GA)n Simple_repeat Simple_repeat 2 35 0 608 335 29 0 chr12 17333532 17333741 -126948748 + MIR SINE MIR 27 241 -21 2215 97 37 0 chr12 17333803 17334102 -126948387 - AluSg SINE Alu 0 310 1 409 332 51 17 chr12 17334484 17334719 -126947770 + MIR SINE MIR 20 262 0 392 304 16 73 chr12 17336626 17336817 -126945672 - MER5A DNA MER1_type 0 189 10 485 257 46 57 chr12 17338296 17338471 -126944018 - MIR SINE MIR -88 174 2 423 257 114 9 chr12 17338507 17338612 -126943877 + L2 LINE L2 3198 3313 0 331 318 133 17 chr12 17340016 17340189 -126942300 + MIR SINE MIR 2 194 -68 204 163 0 0 chr12 17340250 17340293 -126942196 + CT-rich Low_complexity Low_complexity 2 44 0 230 312 78 0 chr12 17340561 17340638 -126941851 + L2 LINE L2 3191 3273 -40 491 284 56 19 chr12 17340829 17340991 -126941498 - MIR SINE MIR -48 214 47 305 329 148 0 chr12 17341612 17341767 -126940722 - MIR SINE MIR -6 256 79 585 0 0 0 chr12 17341787 17341852 -126940637 + (GA)n Simple_repeat Simple_repeat 1 65 0 189 250 0 109 chr12 17342690 17342754 -126939735 + MIR SINE MIR 26 82 -126 * 313 353 0 20 chr12 17342752 17342854 -126939635 + L2 LINE L2 3172 3271 -1 435 119 0 0 chr12 17343199 17343266 -126939223 + (TCTCTG)n Simple_repeat Simple_repeat 5 71 0 277 318 0 0 chr12 17344068 17344134 -126938355 + L2 LINE L2 3172 3237 -35 234 207 0 0 chr12 17344369 17344427 -126938062 + (TG)n Simple_repeat Simple_repeat 1 58 0 449 285 149 19 chr12 17345441 17345655 -126936834 + MIR SINE MIR 20 261 -1 240 296 102 9 chr12 17346400 17346508 -126935981 - MIR3 SINE MIR -10 198 81 1075 231 39 103 chr12 17346886 17347419 -126935070 + LTR53 LTR ERVL 21 519 0 410 219 78 23 chr12 17347623 17347751 -126934738 + L1MA4 LINE L1 6161 6295 -5 209 57 29 0 chr12 17348186 17348221 -126934268 + (TAA)n Simple_repeat Simple_repeat 2 37 0 374 327 76 39 chr12 17348593 17348990 -126933499 + L1ME LINE L1 2819 3236 -2910 5778 143 23 28 chr12 17349200 17349481 -126933008 + L1MA7 LINE L1 4591 4872 -1419 2348 109 19 24 chr12 17349481 17349857 -126932632 + THE1C LTR MaLR 1 374 -1 5778 143 23 28 chr12 17349857 17351279 -126931210 + L1MA7 LINE L1 4872 6289 -2 389 316 94 46 chr12 17351357 17351791 -126930698 + L1ME LINE L1 3761 4215 -1931 1812 133 71 17 chr12 17352182 17352476 -126930013 + AluSx SINE Alu 3 312 0 26 50 0 0 chr12 17352564 17352604 -126929885 + AT_rich Low_complexity Low_complexity 1 40 0 580 327 59 20 chr12 17353098 17353538 -126928951 + L1ME LINE L1 5311 5767 -354 213 39 0 0 chr12 17353540 17353566 -126928923 + (TA)n Simple_repeat Simple_repeat 2 27 0 312 310 0 0 chr12 17353577 17353664 -126928825 - L1MC4 LINE L1 -1335 6707 6621 497 287 67 20 chr12 17354179 17354374 -126928115 + MIR SINE MIR 53 256 -6 249 303 15 0 chr12 17354561 17354627 -126927862 - MIR SINE MIR -110 152 86 249 188 47 47 chr12 17355176 17355240 -126927249 + L2 LINE L2 3250 3313 0 435 358 66 56 chr12 17355533 17355649 -126926840 + L2 LINE L2 1146 1259 -2055 2373 74 3 23 chr12 17355649 17355959 -126926530 - AluSq SINE Alu -9 304 1 435 358 66 56 chr12 17355959 17356401 -126926088 + L2 LINE L2 1259 1713 -1601 1506 175 26 29 chr12 17356401 17356709 -126925780 + AluJo SINE Alu 6 312 0 435 358 66 56 chr12 17356709 17356724 -126925765 + L2 LINE L2 1713 1726 -1588 570 128 30 163 chr12 17356736 17356939 -126925550 - MER53 DNA DNA -13 176 1 1055 328 96 76 chr12 17356941 17358230 -126924259 + L2 LINE L2 1722 3034 -238 269 288 42 108 chr12 17358560 17358772 -126923717 - MIR SINE MIR -52 210 13 1479 312 122 30 chr12 17360414 17361266 -126921223 + L3 LINE CR1 325 1254 -323 321 291 93 0 chr12 17361347 17361433 -126921056 - MIR SINE MIR -168 94 1 258 206 206 27 chr12 17361448 17361521 -126920968 + L3 LINE CR1 1252 1337 -240 184 229 42 0 chr12 17361603 17361651 -126920838 + L3 LINE CR1 1523 1572 -5 289 278 143 23 chr12 17362062 17362195 -126920294 + MIR SINE MIR 65 213 -49 796 251 99 103 chr12 17362268 17362929 -126919560 + MER21B LTR ERV1 60 646 -217 2484 78 0 3 chr12 17362929 17363236 -126919253 + AluSc SINE Alu 1 306 -3 273 299 103 8 chr12 17363523 17363640 -126918849 - MIR SINE MIR -81 181 54 347 296 45 30 chr12 17363849 17363981 -126918508 + L2 LINE L2 3175 3308 -5 741 313 12 19 chr12 17365444 17365700 -126916789 + MIR SINE MIR 9 262 0 248 180 16 33 chr12 17365720 17365781 -126916708 - MIR SINE MIR -17 245 186 27 29 0 0 chr12 17365908 17365942 -126916547 + AT_rich Low_complexity Low_complexity 1 34 0 501 216 16 60 chr12 17366030 17366215 -126916274 + L1MC5 LINE L1 7711 7887 -74 349 208 75 33 chr12 17366231 17366351 -126916138 + L1ME4a LINE L1 5967 6091 -30 1983 182 6 0 chr12 17366411 17366757 -126915732 - MER7A DNA MER2_type 0 346 1 186 43 0 0 chr12 17366853 17366876 -126915613 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 989 275 17 42 chr12 17368159 17368512 -126913977 + L2 LINE L2 471 814 -2500 812 221 74 0 chr12 17368521 17368684 -126913805 + MER58A DNA MER1_type 1 175 -49 315 244 44 0 chr12 17368693 17368783 -126913706 + L2 LINE L2 819 912 -2402 312 316 17 26 chr12 17368797 17368914 -126913575 + L2 LINE L2 3197 3312 -1 917 302 163 15 chr12 17369169 17369917 -126912572 - L2 LINE L2 -1 3312 2455 339 86 0 52 chr12 17370056 17370114 -126912375 + MADE1 DNA Mariner 1 55 -25 598 285 132 21 chr12 17370116 17370351 -126912138 - MIR SINE MIR -1 261 1 256 314 42 2 chr12 17370485 17370605 -126911884 - MIR SINE MIR -66 142 28 26 30 0 0 chr12 17371135 17371168 -126911321 + AT_rich Low_complexity Low_complexity 1 33 0 2426 61 0 7 chr12 17371728 17372022 -126910467 - AluSc SINE Alu -17 292 1 5294 39 0 3 chr12 17372732 17373371 -126909118 - L1PA5 LINE L1 0 6154 5518 2754 35 14 0 chr12 17373371 17373819 -126908670 + L1PA5 LINE L1 5052 5503 -651 336 329 58 0 chr12 17373921 17374058 -126908431 + MIR SINE MIR 48 192 -70 1570 172 63 13 chr12 17374064 17374367 -126908122 + MER2 DNA MER2_type 13 330 -15 24 67 0 0 chr12 17374490 17374535 -126907954 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr12 17375154 17375184 -126907305 + AT_rich Low_complexity Low_complexity 1 30 0 278 327 71 9 chr12 17375358 17375471 -126907018 - L2 LINE L2 -8 3264 3145 935 327 73 37 chr12 17376481 17376553 -126905936 + L2 LINE L2 2459 2527 -745 2493 157 16 16 chr12 17376553 17376987 -126905502 + Tigger2a DNA MER2_type 1 434 0 935 327 73 37 chr12 17376987 17377436 -126905053 + L2 LINE L2 2527 3011 -261 420 20 0 0 chr12 17377642 17377691 -126904798 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr12 17377715 17377737 -126904752 + AT_rich Low_complexity Low_complexity 1 22 0 274 348 61 30 chr12 17377888 17378118 -126904371 - L2 LINE L2 -1527 1787 1551 21 36 0 0 chr12 17378605 17378633 -126903856 + AT_rich Low_complexity Low_complexity 1 28 0 2430 64 0 32 chr12 17378638 17378951 -126903538 + AluY SINE Alu 1 303 -8 999 285 157 70 chr12 17379253 17380640 -126901849 + HAL1 LINE L1 1 1508 -999 1974 161 0 0 chr12 17380640 17381034 -126901455 + AluSx SINE Alu 1 394 0 815 196 235 18 chr12 17381275 17381582 -126900907 - MER58D DNA MER1_type -15 371 1 608 253 148 0 chr12 17381725 17381887 -126900602 + MER5A DNA MER1_type 4 189 0 1134 234 47 44 chr12 17381982 17382346 -126900143 - MLT1A1 LTR MaLR 0 365 1 654 104 0 0 chr12 17383255 17383351 -126899138 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 2481 58 0 10 chr12 17386352 17386660 -126895829 + AluY SINE Alu 1 305 -6 253 190 17 35 chr12 17386848 17386906 -126895583 - MIR SINE MIR 0 262 206 2483 69 0 3 chr12 17388816 17389119 -126893370 - AluY SINE Alu -9 302 1 320 247 177 48 chr12 17390436 17390622 -126891867 + MIR SINE MIR 47 256 -6 1297 196 69 45 chr12 17391021 17391202 -126891287 - MER58B DNA MER1_type -2080 340 146 2215 112 6 6 chr12 17391202 17391515 -126890974 - AluSp SINE Alu 0 313 1 1297 196 69 45 chr12 17391515 17391665 -126890824 - MER58B DNA MER1_type -2274 146 1 353 320 15 89 chr12 17391665 17391868 -126890621 + MIR3 SINE MIR 12 199 -9 25 31 0 0 chr12 17393189 17393221 -126889268 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr12 17393880 17393923 -126888566 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr12 17394712 17394735 -126887754 + AT_rich Low_complexity Low_complexity 1 23 0 940 214 124 10 chr12 17394891 17395181 -126887308 - MER5C DNA MER1_type -1 323 1 1008 299 138 47 chr12 17395371 17396491 -126885998 - L2 LINE L2 0 3272 2027 214 277 0 0 chr12 17397783 17397830 -126884659 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 265 353 43 9 chr12 17398075 17398191 -126884298 + MIR3 SINE MIR 9 128 -80 396 372 68 15 chr12 17398546 17398885 -126883604 + L1MC5 LINE L1 4785 5141 -1005 9879 200 31 33 chr12 17399076 17401595 -126880894 + L1MB2 LINE L1 2865 5388 -783 751 203 0 0 chr12 17401595 17401728 -126880761 + FLAM_C SINE Alu 1 133 0 9879 200 31 33 chr12 17401728 17402472 -126880017 + L1MB2 LINE L1 5388 6132 -39 1620 132 8 0 chr12 17402468 17402711 -126879778 - L1MA5A LINE L1 -409 5888 5644 * 2716 110 42 0 chr12 17402711 17403136 -126879353 + L1MA5A LINE L1 5847 6291 -6 303 95 0 79 chr12 17403193 17403256 -126879233 + L1MB2 LINE L1 6106 6163 -8 1688 249 25 23 chr12 17403256 17403774 -126878715 + L1MC5 LINE L1 5297 5815 -1993 1618 248 56 63 chr12 17403936 17404561 -126877928 + L1MC5 LINE L1 6823 7451 -510 28 0 0 64 chr12 17404561 17404584 -126877905 + AT_rich Low_complexity Low_complexity 1 21 -23 2439 58 0 0 chr12 17404584 17404877 -126877612 + AluY SINE Alu 1 293 -18 28 0 0 64 chr12 17404877 17404900 -126877589 + AT_rich Low_complexity Low_complexity 21 44 0 1618 248 56 63 chr12 17404900 17404920 -126877569 + L1MC5 LINE L1 7451 7470 -491 360 0 0 0 chr12 17404920 17404960 -126877529 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 1618 248 56 63 chr12 17404960 17405103 -126877386 + L1MC5 LINE L1 7470 7652 -309 21 36 0 0 chr12 17405218 17405246 -126877243 + AT_rich Low_complexity Low_complexity 1 28 0 228 214 31 31 chr12 17405329 17405427 -126877062 + L1MC5 LINE L1 7827 7924 -37 559 137 145 34 chr12 17406126 17406243 -126876246 - MER58B DNA MER1_type 0 341 212 713 222 71 0 chr12 17406725 17406986 -126875503 - MLT1E1 LTR MaLR -398 256 1 1378 159 4 26 chr12 17406988 17407258 -126875231 - AluJb SINE Alu 0 350 86 495 197 11 6 chr12 17407268 17407440 -126875049 + CT-rich Low_complexity Low_complexity 1 172 0 753 313 86 29 chr12 17407440 17407788 -126874701 - L2 LINE L2 -1884 1430 1063 688 243 55 93 chr12 17408091 17408457 -126874032 - L1MDa LINE L1 -6133 407 56 1598 254 50 7 chr12 17408482 17409048 -126873441 - L1M4 LINE L1 -810 5336 4747 2529 214 112 17 chr12 17409076 17410089 -126872400 - L1ME1 LINE L1 -5 6161 5053 279 291 39 19 chr12 17410089 17410192 -126872297 - MIR SINE MIR -63 145 41 486 287 50 95 chr12 17410610 17410651 -126871838 - L2 LINE L2 -407 2907 2866 2175 128 22 27 chr12 17410651 17411017 -126871472 + THE1B LTR MaLR 1 364 0 11999 89 5 1 chr12 17411017 17412591 -126869898 + THE1B-int LTR MaLR 1 1580 0 2257 128 19 27 chr12 17412591 17412958 -126869531 + THE1B LTR MaLR 1 364 0 486 287 50 95 chr12 17412958 17413315 -126869174 - L2 LINE L2 -445 2869 2525 1875 171 0 13 chr12 17413490 17413789 -126868700 - AluJo SINE Alu -17 295 1 22 35 0 0 chr12 17415008 17415037 -126867452 + AT_rich Low_complexity Low_complexity 1 29 0 228 194 31 102 chr12 17415607 17415705 -126866784 + CT-rich Low_complexity Low_complexity 5 95 0 1451 179 47 33 chr12 17415740 17416041 -126866448 - AluJb SINE Alu -7 305 1 1527 139 8 4 chr12 17416103 17416340 -126866149 + AluSx SINE Alu 2 239 -73 451 248 40 60 chr12 17416783 17416825 -126865664 - MER5A DNA MER1_type -1 188 147 1530 179 45 70 chr12 17416825 17417199 -126865290 + MLT1A1 LTR MaLR 1 365 0 451 248 40 60 chr12 17417199 17417305 -126865184 - MER5A DNA MER1_type -42 147 43 593 249 103 24 chr12 17417333 17417498 -126864991 + MER5B DNA MER1_type 1 178 0 472 240 23 39 chr12 17418645 17418774 -126863715 - MIR SINE MIR -114 148 22 189 229 0 0 chr12 17419566 17419614 -126862875 + GA-rich Low_complexity Low_complexity 4 51 0 486 268 114 23 chr12 17420081 17420301 -126862188 - MIR SINE MIR -2 260 21 196 339 32 0 chr12 17421637 17421699 -126860790 - MIR SINE MIR -76 132 69 22 0 0 0 chr12 17421736 17421758 -126860731 + AT_rich Low_complexity Low_complexity 1 22 0 290 228 59 10 chr12 17421778 17421879 -126860610 - L1ME4a LINE L1 -7 6114 6009 79 44 0 0 chr12 17421888 17422002 -126860487 + AT_rich Low_complexity Low_complexity 1 114 0 323 296 176 49 chr12 17422129 17422453 -126860036 - L1ME4a LINE L1 -392 5729 5365 547 284 100 26 chr12 17423883 17424154 -126858335 + L2 LINE L2 3016 3306 -7 209 270 43 61 chr12 17424316 17424431 -126858058 + L2 LINE L2 2359 2471 -843 21 0 0 0 chr12 17425086 17425107 -126857382 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 17425136 17425157 -126857332 + (CA)n Simple_repeat Simple_repeat 2 22 0 417 230 0 72 chr12 17426881 17427020 -126855469 + MER94 DNA DNA 6 134 0 2128 116 44 41 chr12 17427213 17427576 -126854913 - THE1B LTR MaLR 0 364 1 6288 25 8 1 chr12 17427997 17428742 -126853747 + L1PA4 LINE L1 5403 6152 -3 329 269 118 8 chr12 17429796 17429915 -126852574 - L1ME4a LINE L1 -262 5859 5728 342 297 28 7 chr12 17429978 17430123 -126852366 - L1ME4a LINE L1 -402 5719 5572 1926 133 133 21 chr12 17431016 17431401 -126851088 + MSTA LTR MaLR 1 428 0 1132 148 81 158 chr12 17431640 17432071 -126850418 + MLT2D LTR ERVL 3 400 -14 275 345 47 18 chr12 17432232 17432403 -126850086 + L2 LINE L2 2302 2477 -837 5018 160 14 39 chr12 17432812 17433140 -126849349 - L1PA16 LINE L1 -13 6153 5818 1914 132 0 0 chr12 17433140 17433406 -126849083 - AluSx SINE Alu -8 304 39 5018 160 14 39 chr12 17433406 17434842 -126847647 - L1PA16 LINE L1 -348 5818 4435 271 143 129 0 chr12 17434845 17434915 -126847574 + MER113 DNA MER1_type? 137 215 -306 633 265 104 19 chr12 17434927 17435138 -126847351 - MIR SINE MIR 0 262 34 368 354 76 56 chr12 17435476 17435872 -126846617 + L2 LINE L2 2852 3255 -17 223 174 0 0 chr12 17436043 17436089 -126846400 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 263 323 126 71 chr12 17436167 17436666 -126845823 - L2 LINE L2 -12 3301 2774 1933 85 22 97 chr12 17436932 17437251 -126845238 - AluYb8 SINE Alu -23 295 1 182 342 129 13 chr12 17437268 17437423 -126845066 - L2 LINE L2 -830 2484 2312 327 85 0 0 chr12 17437455 17437502 -126844987 + (TC)n Simple_repeat Simple_repeat 2 48 0 245 111 0 0 chr12 17437863 17437899 -126844590 - U2 snRNA snRNA -152 36 1 184 71 71 24 chr12 17437901 17437943 -126844546 + (TTAAA)n Simple_repeat Simple_repeat 4 47 0 266 322 99 8 chr12 17438655 17438776 -126843713 + MIR3 SINE MIR 54 185 -23 280 250 29 0 chr12 17439847 17439915 -126842574 - L2 LINE L2 -16 3256 3187 635 315 90 74 chr12 17439997 17441211 -126841278 - L2 LINE L2 -1 3271 2045 5580 73 19 0 chr12 17441551 17442342 -126840147 - L1P LINE L1 -906 5240 4435 271 143 129 0 chr12 17442345 17442415 -126840074 + MER113 DNA MER1_type? 137 215 -306 633 265 104 19 chr12 17442427 17442638 -126839851 - MIR SINE MIR 0 262 34 368 354 76 56 chr12 17442976 17443372 -126839117 + L2 LINE L2 2852 3255 -17 223 174 0 0 chr12 17443543 17443589 -126838900 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 263 323 126 71 chr12 17443667 17444166 -126838323 - L2 LINE L2 -12 3301 2774 2405 56 3 0 chr12 17444432 17444719 -126837770 - AluY SINE Alu -23 288 1 969 26 0 0 chr12 17444930 17445043 -126837446 - AluY SINE Alu -12 299 187 397 332 16 10 chr12 17445052 17445206 -126837283 - MIR SINE MIR -61 147 2 244 233 70 12 chr12 17445300 17445386 -126837103 - MER103 DNA DNA -49 117 27 401 289 56 21 chr12 17445448 17445590 -126836899 + MIR3 SINE MIR 30 176 -32 384 281 74 20 chr12 17445662 17445864 -126836625 + L2 LINE L2 2287 2499 -815 333 328 108 16 chr12 17445864 17446050 -126836439 + MIR SINE MIR 2 204 -58 223 353 72 24 chr12 17446076 17446283 -126836206 + L2 LINE L2 2511 2727 -587 623 273 13 70 chr12 17446488 17446788 -126835701 + MLT1G3 LTR MaLR 1 283 -247 342 214 0 0 chr12 17446816 17446900 -126835589 + (TG)n Simple_repeat Simple_repeat 2 85 0 201 147 0 0 chr12 17448296 17448330 -126834159 + (GA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr12 17450892 17450912 -126831577 + (A)n Simple_repeat Simple_repeat 1 20 0 277 263 71 59 chr12 17451576 17451736 -126830753 + MIR SINE MIR 44 212 -50 2560 59 0 0 chr12 17451829 17452132 -126830357 - AluY SINE Alu -8 303 1 370 243 138 40 chr12 17452146 17452298 -126830191 - MIR SINE MIR -66 196 30 2386 103 0 0 chr12 17453616 17453926 -126828563 + AluSx SINE Alu 1 310 -2 244 303 91 30 chr12 17453943 17454075 -126828414 + MIR SINE MIR 117 256 -6 209 200 0 0 chr12 17454981 17455021 -126827468 + (ATG)n Simple_repeat Simple_repeat 2 41 0 2160 90 3 27 chr12 17455119 17455418 -126827071 - AluY SINE Alu -19 292 1 211 353 58 13 chr12 17455768 17455898 -126826591 - MIR SINE MIR -78 130 20 189 330 22 33 chr12 17455962 17456053 -126826436 - MER5A DNA MER1_type -45 144 55 1747 171 0 13 chr12 17457059 17457358 -126825131 - AluJo SINE Alu -17 295 1 22 35 0 0 chr12 17458576 17458605 -126823884 + AT_rich Low_complexity Low_complexity 1 29 0 228 194 31 102 chr12 17459175 17459273 -126823216 + CT-rich Low_complexity Low_complexity 5 95 0 1304 183 47 33 chr12 17459308 17459609 -126822880 - AluJb SINE Alu -7 305 1 1446 139 8 4 chr12 17459671 17459908 -126822581 + AluSx SINE Alu 2 239 -73 183 213 64 0 chr12 17460351 17460398 -126822091 - MER5A DNA MER1_type -1 188 139 6011 127 3 3 chr12 17460416 17461269 -126821220 + THE1B-int LTR MaLR 728 1580 0 2288 128 19 27 chr12 17461269 17461636 -126820853 + THE1B LTR MaLR 1 364 0 2397 58 0 10 chr12 17463068 17463376 -126819113 + AluY SINE Alu 1 305 -6 257 190 17 35 chr12 17463563 17463621 -126818868 - MIR SINE MIR 0 262 206 1966 137 0 13 chr12 17465531 17465838 -126816651 - AluJb SINE Alu -9 303 1 30 0 0 0 chr12 17467140 17467170 -126815319 + GC_rich Low_complexity Low_complexity 1 30 0 216 149 0 68 chr12 17467180 17467254 -126815235 + (CCCCCT)n Simple_repeat Simple_repeat 3 71 0 369 189 8 33 chr12 17467352 17467474 -126815015 + C-rich Low_complexity Low_complexity 1 119 0 355 344 62 31 chr12 17467672 17467931 -126814558 + Charlie8 DNA MER1_type 1 267 -2150 2171 119 0 0 chr12 17468018 17468329 -126814160 - AluY SINE Alu 0 311 1 244 260 26 13 chr12 17468470 17468547 -126813942 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 253 248 85 85 chr12 17469413 17469542 -126812947 - MIR SINE MIR 0 262 134 293 254 17 23 chr12 17469634 17469807 -126812682 + CT-rich Low_complexity Low_complexity 2 173 0 252 302 35 35 chr12 17470416 17470532 -126811957 + MIR3 SINE MIR 42 157 -51 378 42 0 0 chr12 17470660 17470708 -126811781 + (TG)n Simple_repeat Simple_repeat 2 49 0 221 149 27 40 chr12 17472245 17472319 -126810170 + CT-rich Low_complexity Low_complexity 4 76 0 22 0 0 0 chr12 17472385 17472407 -126810082 + AT_rich Low_complexity Low_complexity 1 22 0 189 191 83 95 chr12 17472820 17472904 -126809585 - MIR SINE MIR -57 151 69 2222 134 40 12 chr12 17473639 17473968 -126808521 - MER1B DNA MER1_type 0 339 2 590 267 20 0 chr12 17474290 17474440 -126808049 + MIR SINE MIR 12 164 -98 2240 202 39 15 chr12 17474441 17474961 -126807528 + L1 LINE L1 4284 4815 -1331 1635 179 7 0 chr12 17475265 17475555 -126806934 + AluJb SINE Alu 1 292 -20 301 293 196 0 chr12 17475949 17476082 -126806407 - MIR SINE MIR -9 253 95 877 265 194 42 chr12 17476089 17476583 -126805906 - MLT1G1 LTR MaLR -7 588 20 766 238 54 9 chr12 17476664 17476887 -126805602 + AluJb SINE Alu 3 235 -77 832 94 16 8 chr12 17478661 17478788 -126803701 + AluY SINE Alu 169 296 -15 291 220 88 55 chr12 17479393 17479484 -126803005 + MIR SINE MIR 114 207 -55 270 259 19 56 chr12 17479507 17479615 -126802874 - MER94 DNA DNA -30 104 1 1173 160 15 10 chr12 17480234 17480440 -126802049 + L1P LINE L1 4840 5046 -1100 995 155 131 0 chr12 17480550 17480756 -126801733 + AluJb SINE Alu 64 296 -16 2121 116 7 0 chr12 17481033 17481343 -126801146 - AluSx SINE Alu 0 312 1 251 111 0 22 chr12 17482927 17482972 -126799517 + (TTTC)n Simple_repeat Simple_repeat 4 47 0 207 256 23 12 chr12 17483469 17483555 -126798934 + CT-rich Low_complexity Low_complexity 4 90 0 313 320 8 16 chr12 17483654 17483782 -126798707 + CT-rich Low_complexity Low_complexity 2 128 0 669 299 60 40 chr12 17484620 17484921 -126797568 + L2 LINE L2 3005 3311 -2 260 324 0 21 chr12 17485083 17485228 -126797261 + C-rich Low_complexity Low_complexity 2 143 0 235 318 109 75 chr12 17485377 17485616 -126796873 - MIR SINE MIR -4 258 12 244 260 39 0 chr12 17486480 17486557 -126795932 + L1MC4a LINE L1 5539 5618 -503 273 194 65 16 chr12 17486565 17486627 -126795862 + MLT1I LTR MaLR 345 409 0 2003 150 186 42 chr12 17486735 17487182 -126795307 - MLT2B2 LTR ERVL 0 515 5 203 125 0 50 chr12 17488385 17488425 -126794064 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 22 35 0 0 chr12 17488961 17488990 -126793499 + GC_rich Low_complexity Low_complexity 1 29 0 351 203 14 14 chr12 17491592 17491666 -126790823 + MIR SINE MIR 79 152 -110 405 341 105 18 chr12 17491707 17491936 -126790553 - MIR SINE MIR -12 250 2 277 223 85 43 chr12 17492194 17492288 -126790201 + MIR SINE MIR 51 148 -60 2464 186 26 2 chr12 17492910 17493379 -126789110 + L1MC3 LINE L1 7306 7785 0 1234 233 105 34 chr12 17493375 17493899 -126788590 + L1M4 LINE L1 4369 4929 -1217 * 15035 44 20 3 chr12 17494179 17496101 -126786388 + L1P LINE L1 2023 3977 -2169 619 245 19 31 chr12 17496236 17496513 -126785976 - L1ME LINE L1 -692 5472 5197 3545 203 108 5 chr12 17496576 17497599 -126784890 - L1P4 LINE L1 -676 5492 4357 508 215 0 0 chr12 17497603 17497696 -126784793 + MLT1E2 LTR MaLR 526 618 -8 264 91 0 0 chr12 17498392 17498436 -126784053 + (TG)n Simple_repeat Simple_repeat 1 44 0 329 376 27 0 chr12 17498830 17498979 -126783510 + L1MC4a LINE L1 5749 5901 -1907 1155 223 59 0 chr12 17499008 17499281 -126783208 + L1MD2 LINE L1 5854 6142 -217 1102 103 30 12 chr12 17501229 17501394 -126781095 - THE1B LTR MaLR -196 168 1 1963 77 8 0 chr12 17501394 17501653 -126780836 - THE1B-int LTR MaLR 0 1580 1320 219 36 0 0 chr12 17501953 17501981 -126780508 + (CA)n Simple_repeat Simple_repeat 2 29 0 272 297 68 25 chr12 17502847 17502965 -126779524 + MER117 DNA MER1_type 33 155 -42 312 302 47 9 chr12 17503322 17503428 -126779061 - L2 LINE L2 -10 3303 3194 470 335 57 16 chr12 17503697 17503891 -126778598 - MIR SINE MIR -52 210 9 2663 116 88 16 chr12 17504027 17504518 -126777971 - Tigger3(Golem) DNA MER2_type 0 3029 2504 1074 274 47 40 chr12 17505284 17505716 -126776773 - MLT1K LTR MaLR -26 562 58 222 222 0 28 chr12 17506500 17506572 -126775917 + C-rich Low_complexity Low_complexity 5 74 0 292 269 11 32 chr12 17506728 17506821 -126775668 - MLT1K LTR MaLR -52 536 446 239 271 13 13 chr12 17506892 17507047 -126775442 + CT-rich Low_complexity Low_complexity 1 155 0 285 258 32 32 chr12 17507057 17507150 -126775339 - MLT1K LTR MaLR -162 426 334 425 277 34 27 chr12 17507575 17507723 -126774766 - MIR3 SINE MIR -1 207 59 376 257 114 9 chr12 17508506 17508611 -126773878 - L2 LINE L2 0 3313 3198 354 297 28 41 chr12 17508647 17508792 -126773697 + MIR SINE MIR 2 144 -118 339 169 0 0 chr12 17508922 17508993 -126773496 + C-rich Low_complexity Low_complexity 1 71 0 200 86 29 0 chr12 17509034 17509069 -126773420 + (CCCCCA)n Simple_repeat Simple_repeat 4 39 0 241 241 11 23 chr12 17509081 17509168 -126773321 + C-rich Low_complexity Low_complexity 1 86 0 291 301 0 0 chr12 17509259 17509352 -126773137 + C-rich Low_complexity Low_complexity 1 93 0 32 0 0 0 chr12 17509670 17509702 -126772787 + GC_rich Low_complexity Low_complexity 1 32 0 2177 112 0 0 chr12 17510429 17510715 -126771774 - AluSx SINE Alu -13 299 14 316 221 39 0 chr12 17511059 17511136 -126771353 - MLT1A2 LTR MaLR -12 362 283 21 0 0 0 chr12 17511250 17511271 -126771218 + GC_rich Low_complexity Low_complexity 1 21 0 212 374 0 19 chr12 17511282 17511389 -126771100 + C-rich Low_complexity Low_complexity 3 107 0 2210 135 3 35 chr12 17512082 17512430 -126770059 + MER1B DNA MER1_type 1 337 0 597 212 55 20 chr12 17512453 17512599 -126769890 - MLT1K LTR MaLR -81 507 357 23 0 0 0 chr12 17513423 17513446 -126769043 + AT_rich Low_complexity Low_complexity 1 23 0 280 242 11 55 chr12 17513622 17513713 -126768776 - MLT1K LTR MaLR -11 577 491 705 218 20 99 chr12 17513720 17514013 -126768476 + MLT1B LTR MaLR 7 276 -114 242 250 0 0 chr12 17514191 17514353 -126768136 + C-rich Low_complexity Low_complexity 1 162 0 1475 211 32 29 chr12 17514810 17515124 -126767365 + MER63B DNA MER1_type 11 328 -734 2431 57 7 3 chr12 17515124 17515425 -126767064 - AluY SINE Alu -9 302 1 1475 211 32 29 chr12 17515425 17515452 -126767037 + MER63B DNA MER1_type 328 353 -83 270 255 0 59 chr12 17515463 17515565 -126766924 + C-rich Low_complexity Low_complexity 2 97 0 267 269 0 0 chr12 17515579 17515709 -126766780 + C-rich Low_complexity Low_complexity 1 130 0 263 135 40 14 chr12 17515730 17515804 -126766685 + C-rich Low_complexity Low_complexity 4 79 0 2208 170 28 30 chr12 17515959 17516419 -126766070 + MLT1C LTR MaLR 9 467 0 327 274 11 51 chr12 17517513 17517688 -126764801 + MIR SINE MIR 89 256 -6 998 221 135 33 chr12 17517821 17518124 -126764365 + MER102b DNA MER1_type 2 335 -6 1176 174 33 5 chr12 17518150 17518362 -126764127 - MER20 DNA MER1_type -1 218 1 224 240 0 0 chr12 17518455 17518505 -126763984 + L2 LINE L2 3263 3312 -1 193 344 22 11 chr12 17518524 17518614 -126763875 + MIR SINE MIR 59 149 -113 21 0 0 0 chr12 17519703 17519724 -126762765 + AT_rich Low_complexity Low_complexity 1 21 0 203 193 0 60 chr12 17519878 17519961 -126762528 + G-rich Low_complexity Low_complexity 5 82 0 1428 195 4 15 chr12 17520078 17520339 -126762150 - AluJo SINE Alu -54 258 1 818 174 22 0 chr12 17520339 17520477 -126762012 - MER20 DNA MER1_type -73 146 6 366 237 114 41 chr12 17520633 17520852 -126761637 + MIR SINE MIR 20 254 -8 188 163 143 0 chr12 17521327 17521376 -126761113 - L2 LINE L2 -337 2976 2921 1086 216 62 17 chr12 17521409 17521701 -126760788 + L1MA4 LINE L1 5982 6286 -14 548 299 119 18 chr12 17521735 17522063 -126760426 - L2 LINE L2 -719 2595 2235 651 267 40 32 chr12 17522469 17522720 -126759769 + L1ME3A LINE L1 5913 6165 -5 663 248 98 4 chr12 17522868 17523114 -126759375 + MER113 DNA MER1_type? 205 473 -48 416 223 159 9 chr12 17523418 17523651 -126758838 + L2 LINE L2 2479 2746 -568 220 274 16 0 chr12 17524484 17524546 -126757943 - MIR SINE MIR -121 141 79 567 0 0 0 chr12 17524566 17524629 -126757860 + (GA)n Simple_repeat Simple_repeat 1 63 0 241 333 0 0 chr12 17524686 17524746 -126757743 + C-rich Low_complexity Low_complexity 3 62 0 341 255 12 27 chr12 17524751 17525031 -126757458 + CT-rich Low_complexity Low_complexity 1 275 0 232 340 32 0 chr12 17525889 17525983 -126756506 - MER5A DNA MER1_type -3 186 90 333 217 0 0 chr12 17527498 17527567 -126754922 + L1MB1 LINE L1 6088 6156 -33 468 218 224 6 chr12 17529070 17529177 -126753312 + HAL1 LINE L1 1309 1391 -1116 188 45 0 0 chr12 17529177 17529199 -126753290 + (GA)n Simple_repeat Simple_repeat 2 23 0 468 218 224 6 chr12 17529199 17529247 -126753242 + HAL1 LINE L1 1391 1498 -1009 321 283 60 60 chr12 17529994 17530160 -126752329 - LTR33 LTR ERVL -327 194 29 244 125 429 0 chr12 17532113 17532169 -126750320 - MADE1 DNA Mariner 0 80 1 392 322 16 22 chr12 17532175 17532358 -126750131 + L2 LINE L2 2907 3088 -225 634 129 0 0 chr12 17532363 17532448 -126750041 - MER81 DNA DNA 0 114 30 188 341 79 37 chr12 17532471 17532502 -126749987 + L2 LINE L2 3142 3170 -143 273 29 0 0 chr12 17532502 17532536 -126749953 + (CA)n Simple_repeat Simple_repeat 2 35 0 188 341 79 37 chr12 17532536 17532668 -126749821 + L2 LINE L2 3170 3312 -1 3841 127 9 61 chr12 17533506 17533578 -126748911 + MER39B LTR ERV1 3 77 -576 2110 99 4 0 chr12 17533578 17533851 -126748638 + AluSc SINE Alu 21 294 -15 3841 127 9 61 chr12 17533851 17534462 -126748027 + MER39B LTR ERV1 77 650 -3 1006 103 28 0 chr12 17535060 17535205 -126747284 - L1MA6 LINE L1 -546 5754 5606 3276 153 12 14 chr12 17535208 17535772 -126746717 + L1MA6 LINE L1 5738 6300 0 2443 93 0 3 chr12 17536983 17537294 -126745195 - AluSq SINE Alu -3 310 1 410 332 17 10 chr12 17537415 17537594 -126744895 + MIR SINE MIR 15 190 -64 21 0 0 0 chr12 17537782 17537803 -126744686 + AT_rich Low_complexity Low_complexity 1 21 0 2214 98 7 127 chr12 17538822 17539280 -126743209 + L1MA5 LINE L1 5896 6298 -2 518 323 14 32 chr12 17540539 17540756 -126741733 + MLT1J LTR MaLR 53 265 -246 440 250 153 23 chr12 17540827 17541003 -126741486 + MER58C DNA MER1_type 17 215 0 340 265 33 80 chr12 17541007 17541185 -126741304 + MLT1J LTR MaLR 262 470 -21 432 224 0 0 chr12 17541312 17541397 -126741092 - L2 LINE L2 0 3313 3229 262 333 29 14 chr12 17541645 17541783 -126740706 - L1ME3A LINE L1 -11 6159 6020 461 293 110 35 chr12 17541869 17542230 -126740259 - L1ME3A LINE L1 -322 5848 5516 5090 78 6 3 chr12 17542230 17542897 -126739592 - L1PA10 LINE L1 -1 6167 5499 461 293 110 35 chr12 17542897 17543192 -126739297 - L1ME3A LINE L1 -654 5516 5144 1007 181 6 0 chr12 17543336 17543502 -126738987 + FRAM SINE Alu 1 167 -9 432 146 19 19 chr12 17543502 17543660 -126738829 + (TA)n Simple_repeat Simple_repeat 1 158 0 622 305 56 15 chr12 17543668 17544009 -126738480 - L1ME3A LINE L1 -1156 4990 4636 204 146 42 21 chr12 17545816 17545864 -126736625 - L2 LINE L2 -6 3307 3259 1326 251 51 29 chr12 17546122 17546497 -126735992 - LTR10C LTR ERV1 -21 570 188 279 0 0 0 chr12 17546517 17546548 -126735941 + (TA)n Simple_repeat Simple_repeat 2 32 0 255 236 0 0 chr12 17547398 17547453 -126735036 - L2 LINE L2 -5 3308 3254 273 29 0 0 chr12 17548553 17548587 -126733902 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 288 0 0 0 chr12 17548586 17548618 -126733871 + (TG)n Simple_repeat Simple_repeat 2 33 0 1962 77 8 0 chr12 17548917 17549176 -126733313 + THE1B-int LTR MaLR 1320 1580 0 2381 109 19 25 chr12 17549176 17549542 -126732947 + THE1B LTR MaLR 1 364 0 599 169 110 15 chr12 17550064 17550200 -126732289 + L1MA10 LINE L1 6185 6333 -1 618 366 60 53 chr12 17550285 17550561 -126731928 + HERVL LTR ERVL 393 666 -4330 1930 181 25 8 chr12 17550561 17550920 -126731569 - MLT1A1 LTR MaLR 0 365 1 618 366 60 53 chr12 17550920 17551811 -126730678 + HERVL LTR ERVL 666 1568 -3428 1027 273 62 35 chr12 17552007 17552410 -126730079 + HERVL LTR ERVL 3946 4359 -1295 464 311 44 52 chr12 17552487 17552512 -126729977 + HERVL LTR ERVL 4400 4424 -1340 1353 220 70 68 chr12 17552512 17552661 -126729828 + MLT1D LTR MaLR 5 152 -353 2079 93 10 58 chr12 17552661 17552972 -126729517 + AluSx SINE Alu 1 296 -16 1353 220 70 68 chr12 17552972 17553322 -126729167 + MLT1D LTR MaLR 152 505 0 464 311 44 52 chr12 17553322 17553544 -126728945 + HERVL LTR ERVL 4424 4645 -1119 743 317 67 31 chr12 17553769 17554129 -126728360 + HERVL LTR ERVL 4969 5341 -423 461 259 56 25 chr12 17555905 17556102 -126726387 + MIR SINE MIR 12 214 -48 5262 152 19 76 chr12 17556632 17557689 -126724800 - L1MA5 LINE L1 -2 6298 5182 2204 51 0 33 chr12 17557689 17557963 -126724526 - AluY SINE Alu -26 285 21 189 0 0 0 chr12 17557966 17557987 -126724502 + (TTA)n Simple_repeat Simple_repeat 2 22 0 5262 152 19 76 chr12 17557987 17558364 -126724125 - L1MA5 LINE L1 -1120 5180 4922 189 431 0 0 chr12 17558364 17558473 -126724016 + L2 LINE L2 2746 2854 -460 479 245 97 36 chr12 17558632 17558828 -126723661 + L2 LINE L2 3105 3312 -1 824 268 52 20 chr12 17559003 17559253 -126723236 - MIR SINE MIR 0 262 5 333 0 0 0 chr12 17560569 17560606 -126721883 + (CA)n Simple_repeat Simple_repeat 2 38 0 205 319 22 33 chr12 17563142 17563233 -126719256 + MER5A DNA MER1_type 55 144 -45 314 293 57 12 chr12 17563297 17563427 -126719062 + MIR SINE MIR 20 151 -68 2424 65 3 7 chr12 17563777 17564086 -126718403 + AluY SINE Alu 1 308 -3 1359 218 56 6 chr12 17564518 17564857 -126717632 - MLT1A1 LTR MaLR 0 365 10 186 320 16 107 chr12 17566584 17566706 -126715783 + MIR SINE MIR 20 130 -78 467 247 31 66 chr12 17567990 17568191 -126714298 - MIR SINE MIR -6 256 64 266 258 106 30 chr12 17568185 17568317 -126714172 + MIR3 SINE MIR 62 203 -5 * 584 234 53 35 chr12 17568797 17568836 -126713653 - MIR SINE MIR 0 262 225 4913 76 45 1 chr12 17568836 17569495 -126712994 - LTR12 LTR ERV1 0 688 1 584 234 53 35 chr12 17569495 17569626 -126712863 - MIR SINE MIR -37 225 89 216 0 0 0 chr12 17569627 17569651 -126712838 + (TG)n Simple_repeat Simple_repeat 1 24 0 394 250 50 0 chr12 17569674 17569774 -126712715 - MIR SINE MIR -71 191 87 463 0 0 0 chr12 17569826 17569880 -126712609 - LTR12 LTR ERV1 -8 706 653 379 290 0 10 chr12 17571728 17571828 -126710661 + MIR3 SINE MIR 77 175 -33 23 68 0 0 chr12 17571920 17571964 -126710525 + AT_rich Low_complexity Low_complexity 1 44 0 186 189 0 0 chr12 17572292 17572329 -126710160 + (TATG)n Simple_repeat Simple_repeat 4 40 0 451 174 104 0 chr12 17573585 17573799 -126708690 + L1MA4A LINE L1 5981 6278 -25 230 310 19 82 chr12 17574403 17574561 -126707928 - L2 LINE L2 -558 2756 2609 257 254 99 0 chr12 17574985 17575056 -126707433 + MIR SINE MIR 112 189 -73 30 0 0 0 chr12 17576656 17576686 -126705803 + AT_rich Low_complexity Low_complexity 1 30 0 2408 58 7 3 chr12 17576699 17576993 -126705496 + AluY SINE Alu 1 295 -16 342 186 12 0 chr12 17576999 17577085 -126705404 - L1MA4 LINE L1 -6 6294 6208 1393 128 0 0 chr12 17577085 17577311 -126705178 - L1 LINE L1 -1969 4177 3952 698 178 0 23 chr12 17577313 17577442 -126705047 - FLAM_A SINE Alu -11 131 6 228 234 0 0 chr12 17577461 17577525 -126704964 + L1MC4 LINE L1 6640 6703 -1339 * 235 300 0 0 chr12 17577483 17577573 -126704916 - L1MC4 LINE L1 -1339 6703 6614 326 220 0 22 chr12 17577574 17577665 -126704824 + (CATATA)n Simple_repeat Simple_repeat 3 91 0 334 284 23 0 chr12 17577665 17577753 -126704736 + L1MC4 LINE L1 6614 6703 -1339 2804 195 35 5 chr12 17577758 17578087 -126704402 - L1 LINE L1 -2202 3944 3626 237 33 0 0 chr12 17578087 17578117 -126704372 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2804 195 35 5 chr12 17578117 17578417 -126704072 - L1 LINE L1 -2520 3626 3296 1264 189 102 7 chr12 17578418 17578582 -126703907 - AluJo SINE Alu 0 312 165 207 0 0 0 chr12 17578582 17578605 -126703884 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1264 189 102 7 chr12 17578605 17578715 -126703774 - AluJo SINE Alu -147 165 12 4000 185 35 4 chr12 17578718 17579654 -126702835 - L1 LINE L1 -2853 3293 2329 1420 169 22 18 chr12 17579654 17579932 -126702557 + MLT1A1 LTR MaLR 87 365 0 2242 212 72 32 chr12 17579932 17581144 -126701345 - L1ME2 LINE L1 -149 6015 4757 257 273 73 60 chr12 17581258 17581408 -126701081 + MIR SINE MIR 111 262 0 244 260 26 13 chr12 17582274 17582351 -126700138 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 2364 90 0 0 chr12 17582492 17582792 -126699697 + AluY SINE Alu 1 300 -11 180 0 0 0 chr12 17585275 17585295 -126697194 + (A)n Simple_repeat Simple_repeat 1 20 0 293 268 108 57 chr12 17585964 17586121 -126696368 + MIR SINE MIR 48 212 -50 2560 59 0 0 chr12 17586214 17586517 -126695972 - AluY SINE Alu -8 303 1 370 243 138 40 chr12 17586531 17586683 -126695806 - MIR SINE MIR -66 196 30 2386 103 0 0 chr12 17588001 17588311 -126694178 + AluSx SINE Alu 1 310 -2 263 311 83 23 chr12 17588328 17588460 -126694029 + MIR SINE MIR 117 256 -6 209 200 0 0 chr12 17589369 17589409 -126693080 + (ATG)n Simple_repeat Simple_repeat 2 41 0 251 296 44 89 chr12 17589469 17589507 -126692982 - MIR SINE MIR -84 178 140 2231 94 0 23 chr12 17589507 17589806 -126692683 - AluY SINE Alu -19 292 1 251 296 44 89 chr12 17589806 17589902 -126692587 - MIR SINE MIR -122 140 50 2248 119 0 3 chr12 17590231 17590534 -126691955 - AluSx SINE Alu -10 302 1 228 163 0 0 chr12 17591245 17591288 -126691201 + A-rich Low_complexity Low_complexity 1 43 0 2237 103 0 0 chr12 17591678 17591969 -126690520 - AluSx SINE Alu -8 304 14 239 293 65 66 chr12 17592260 17592301 -126690188 - MIR SINE MIR -95 113 73 1682 191 10 57 chr12 17592301 17592684 -126689805 - MLT1A1 LTR MaLR 0 365 1 239 293 65 66 chr12 17592684 17592769 -126689720 - MIR SINE MIR -135 73 20 403 257 86 0 chr12 17592784 17592889 -126689600 - L2 LINE L2 0 3313 3200 1566 165 32 52 chr12 17593730 17594039 -126688450 - AluJo SINE Alu -9 303 1 1744 129 24 86 chr12 17594690 17594942 -126687547 - L1PA16 LINE L1 -84 6082 5865 2301 100 0 3 chr12 17594942 17595241 -126687248 - AluSx SINE Alu -14 298 1 1744 129 24 86 chr12 17595241 17595386 -126687103 - L1PA16 LINE L1 -301 5865 5713 22 0 0 0 chr12 17597011 17597033 -126685456 + AT_rich Low_complexity Low_complexity 1 22 0 261 372 31 0 chr12 17597193 17597322 -126685167 + L3 LINE CR1 1407 1539 -38 1580 165 66 11 chr12 17599140 17599412 -126683077 + AluJo SINE Alu 2 288 -24 1986 249 76 17 chr12 17600911 17601690 -126680799 - L1MC4 LINE L1 -1 8041 7217 237 65 0 0 chr12 17602211 17602242 -126680247 + (CA)n Simple_repeat Simple_repeat 1 31 0 426 39 0 0 chr12 17603102 17603154 -126679335 + (CA)n Simple_repeat Simple_repeat 2 53 0 588 296 65 68 chr12 17605919 17606006 -126676483 - MLT1H LTR MaLR -195 354 268 848 270 9 35 chr12 17606006 17606236 -126676253 + MER58A DNA MER1_type 1 224 0 588 296 65 68 chr12 17606236 17606503 -126675986 - MLT1H LTR MaLR -281 268 1 256 333 42 42 chr12 17607135 17607279 -126675210 + MIR3 SINE MIR 52 195 -13 371 221 32 32 chr12 17607768 17607863 -126674626 - L2 LINE L2 0 3313 3219 1836 165 22 25 chr12 17607941 17608299 -126674190 + MER58D DNA MER1_type 1 357 -29 3153 162 19 4 chr12 17608299 17609307 -126673182 + L1MA4 LINE L1 4781 5803 -497 238 126 44 66 chr12 17609313 17609496 -126672993 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 2435 169 41 8 chr12 17609515 17610007 -126672482 + L1MA4 LINE L1 5779 6286 -14 25 0 0 0 chr12 17610019 17610044 -126672445 + AT_rich Low_complexity Low_complexity 1 25 0 235 116 139 0 chr12 17610058 17610101 -126672388 + MER58D DNA MER1_type 338 386 0 711 274 12 37 chr12 17611057 17611302 -126671187 + L1MC4a LINE L1 5629 5867 -1941 1692 185 3 0 chr12 17611364 17611650 -126670839 - AluJo SINE Alu -21 291 5 231 323 102 32 chr12 17611718 17612285 -126670204 + L1MC4a LINE L1 6047 6653 -1155 374 185 22 43 chr12 17612288 17612380 -126670109 + L1MC5 LINE L1 6774 6863 -1098 205 286 29 0 chr12 17612454 17612524 -126669965 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 21 36 0 0 chr12 17612561 17612589 -126669900 + AT_rich Low_complexity Low_complexity 1 28 0 1424 241 99 55 chr12 17612611 17613460 -126669029 + L1MC5 LINE L1 7045 7930 -31 44341 36 3 2 chr12 17613619 17619766 -126662723 - L1PA4 LINE L1 0 6155 3 21 0 0 0 chr12 17619884 17619905 -126662584 + AT_rich Low_complexity Low_complexity 1 21 0 2299 117 3 0 chr12 17619924 17620232 -126662257 - AluSp SINE Alu -2 311 3 1449 224 64 43 chr12 17620708 17621146 -126661343 + MLT1C LTR MaLR 21 467 0 2271 169 35 24 chr12 17623164 17623590 -126658899 + MER44D DNA MER2_type 1 486 -119 343 82 0 129 chr12 17623608 17623685 -126658804 + MER44D DNA MER2_type 454 521 -1966 2906 180 39 19 chr12 17623685 17624004 -126658485 + MER7C DNA MER2_type 1 339 -2689 2406 61 3 0 chr12 17624004 17624298 -126658191 - AluY SINE Alu -16 295 1 2906 180 39 19 chr12 17624298 17624568 -126657921 + MER7C DNA MER2_type 339 602 0 593 53 13 0 chr12 17624580 17624656 -126657833 - MADE1 DNA Mariner 0 80 4 1414 89 61 0 chr12 17624656 17624869 -126657620 - Tigger3(Golem) DNA MER2_type -174 2855 2630 283 192 0 0 chr12 17624873 17624925 -126657564 - Tigger3(Golem) DNA MER2_type -2825 204 153 317 271 25 0 chr12 17624959 17625052 -126657437 + Tigger7 DNA MER2_type 639 2487 0 303 230 0 14 chr12 17625107 17625181 -126657308 - MER5C DNA MER1_type -200 124 52 334 260 0 10 chr12 17626612 17626716 -126655773 - MER69 DNA AcHobo 0 2526 2424 5690 135 9 24 chr12 17626797 17627614 -126654875 - L1PA14 LINE L1 -33 6128 5336 3209 54 7 19 chr12 17627614 17628042 -126654447 - L1PA8 LINE L1 0 6172 5750 5690 135 9 24 chr12 17628042 17628666 -126653823 - L1PA14 LINE L1 -825 5336 4704 731 231 141 12 chr12 17628694 17628950 -126653539 - MER69 DNA AcHobo -232 2294 2006 367 362 7 0 chr12 17628947 17629085 -126653404 - MER69 DNA AcHobo -659 567 429 * 214 258 0 0 chr12 17629194 17629260 -126653229 + (TA)n Simple_repeat Simple_repeat 1 66 0 236 242 24 40 chr12 17629260 17629384 -126653105 + L1MC4 LINE L1 6613 6734 -1308 1272 245 30 13 chr12 17629417 17629715 -126652774 - MER69 DNA AcHobo -2217 309 7 968 288 65 24 chr12 17630336 17630840 -126651649 - L1ME LINE L1 -345 5800 5276 946 133 0 22 chr12 17630870 17631050 -126651439 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 2031 137 3 16 chr12 17631063 17631370 -126651119 - AluSx SINE Alu -9 303 1 382 304 127 19 chr12 17631370 17631889 -126650600 - L1ME LINE L1 -837 5292 4718 4955 92 29 3 chr12 17631901 17632254 -126650235 - L1PB1 LINE L1 -4 6147 5805 225 0 0 0 chr12 17632254 17632279 -126650210 + (TA)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr12 17632278 17632300 -126650189 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 4955 92 29 3 chr12 17632279 17632665 -126649824 - L1PB1 LINE L1 -346 5805 5410 6785 200 11 19 chr12 17632665 17634196 -126648293 + L1PB1 LINE L1 3897 5421 -743 48 0 0 0 chr12 17634293 17634341 -126648148 + AT_rich Low_complexity Low_complexity 1 48 0 310 198 168 20 chr12 17634390 17634491 -126647998 - L1ME LINE L1 -1535 4594 4479 237 204 0 0 chr12 17637550 17637594 -126644895 + CT-rich Low_complexity Low_complexity 2 45 0 383 320 17 23 chr12 17639171 17639343 -126643146 - L1ME LINE L1 -2866 3263 3093 186 43 0 0 chr12 17639388 17639411 -126643078 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 30 45 0 0 chr12 17639414 17639458 -126643031 + AT_rich Low_complexity Low_complexity 1 44 0 1370 273 65 57 chr12 17639547 17639985 -126642504 - L1MEc LINE L1 -3083 3046 2613 490 91 39 0 chr12 17639985 17640062 -126642427 + MADE1 DNA Mariner 1 80 0 1370 273 65 57 chr12 17640062 17640083 -126642406 - L1MEc LINE L1 -3516 2613 2594 2233 139 21 19 chr12 17640083 17640457 -126642032 - THE1C LTR MaLR 0 375 1 1370 273 65 57 chr12 17640457 17640984 -126641505 - L1MEc LINE L1 -3535 2594 2092 21 0 0 0 chr12 17641012 17641033 -126641456 + AT_rich Low_complexity Low_complexity 1 21 0 1310 217 23 26 chr12 17641407 17641757 -126640732 + L1PA14 LINE L1 2892 3240 -2906 10029 177 20 19 chr12 17641759 17644225 -126638264 + L1PA14 LINE L1 3358 5831 -330 2465 91 0 0 chr12 17644225 17644532 -126637957 + AluSc SINE Alu 1 307 -2 10029 177 20 19 chr12 17644532 17644851 -126637638 + L1PA14 LINE L1 5831 6148 -13 235 284 55 8 chr12 17644863 17644990 -126637499 - L1MEc LINE L1 -4606 1523 1391 412 334 46 26 chr12 17645133 17645483 -126637006 - L1MEc LINE L1 -4902 1217 861 279 114 0 0 chr12 17645736 17645780 -126636709 + (TG)n Simple_repeat Simple_repeat 1 44 0 266 331 178 12 chr12 17645829 17645992 -126636497 - LTR40b LTR ERVL -98 364 175 235 386 9 0 chr12 17646786 17646900 -126635589 + L2 LINE L2 2511 2625 -689 357 179 46 6 chr12 17647012 17647185 -126635304 + (TA)n Simple_repeat Simple_repeat 1 180 0 321 313 104 66 chr12 17647226 17647801 -126634688 + L2 LINE L2 2705 3312 -1 736 340 19 4 chr12 17648271 17648527 -126633962 + MIR SINE MIR 3 262 0 258 275 217 0 chr12 17648634 17648772 -126633717 + MIR SINE MIR 18 185 -77 2457 109 43 3 chr12 17648995 17649345 -126633144 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr12 17650528 17650559 -126631930 + AT_rich Low_complexity Low_complexity 1 31 0 2349 81 0 34 chr12 17650827 17650865 -126631624 - AluY SINE Alu -2 309 271 239 71 24 0 chr12 17650865 17650907 -126631582 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2349 81 0 34 chr12 17650907 17651188 -126631301 - AluY SINE Alu -40 271 1 2199 107 0 3 chr12 17651214 17651504 -126630985 + AluSq SINE Alu 1 289 -24 2240 180 7 31 chr12 17651850 17652295 -126630194 + Tigger2a DNA MER2_type 1 434 0 31 44 0 0 chr12 17652367 17652412 -126630077 + AT_rich Low_complexity Low_complexity 1 45 0 1246 219 134 12 chr12 17652870 17653198 -126629291 - MLT1A2 LTR MaLR -6 368 1 2018 147 18 54 chr12 17653559 17653948 -126628541 - THE1C LTR MaLR 0 375 1 488 311 76 7 chr12 17654618 17654812 -126627677 - MIR SINE MIR -54 208 2 750 282 82 5 chr12 17655101 17655321 -126627168 + MIR SINE MIR 19 255 -7 1053 259 97 35 chr12 17656931 17657301 -126625188 - LTR16A LTR ERVL -6 444 52 270 322 11 0 chr12 17657423 17657513 -126624976 - HERV16 LTR ERVL -100 4896 4806 560 341 14 5 chr12 17657688 17657905 -126624584 - HERV16 LTR ERVL -667 5097 4879 1039 326 73 47 chr12 17658003 17658659 -126623830 - HERV16 LTR ERVL -1037 4727 4055 322 313 60 0 chr12 17658728 17658862 -126623627 - HERV16 LTR ERVL -1428 3568 3427 1595 277 135 9 chr12 17659137 17659715 -126622774 - L1MEc LINE L1 -5678 718 68 291 329 0 0 chr12 17659729 17659811 -126622678 - HERV16 LTR ERVL -3018 1978 1897 225 300 117 42 chr12 17660527 17660647 -126621842 + L2 LINE L2 3136 3264 -8 1711 154 14 14 chr12 17661764 17662057 -126620432 - AluSx SINE Alu -18 294 2 216 289 42 56 chr12 17662460 17662602 -126619887 + L2 LINE L2 2598 2737 -577 21 0 0 0 chr12 17662951 17662972 -126619517 + AT_rich Low_complexity Low_complexity 1 21 0 2246 54 9 66 chr12 17663144 17663461 -126619028 + AluY SINE Alu 1 299 -12 221 375 0 0 chr12 17663485 17663565 -126618924 - L2 LINE L2 0 3313 3234 2005 144 3 0 chr12 17663863 17664155 -126618334 - AluSx SINE Alu -19 293 1 23 54 0 0 chr12 17664256 17664293 -126618196 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr12 17664653 17664674 -126617815 + AT_rich Low_complexity Low_complexity 1 21 0 327 304 66 53 chr12 17665856 17665985 -126616504 - HAL1 LINE L1 -1304 1203 1068 13518 138 36 25 chr12 17665985 17668378 -126614111 - Tigger1 DNA MER2_type 0 2418 1 327 304 66 53 chr12 17668378 17668491 -126613998 - HAL1 LINE L1 -1439 1068 958 477 0 0 0 chr12 17669153 17669206 -126613283 + (CA)n Simple_repeat Simple_repeat 2 54 0 1615 234 11 86 chr12 17669217 17669431 -126613058 - MLT2B1 LTR ERVL -2 518 290 3618 75 0 0 chr12 17669431 17669884 -126612605 - MLT2A2 LTR ERVL 0 453 1 1615 234 11 86 chr12 17669884 17670229 -126612260 - MLT2B1 LTR ERVL -230 290 1 208 179 26 0 chr12 17670647 17670686 -126611803 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 189 0 0 0 chr12 17670916 17670937 -126611552 + (TG)n Simple_repeat Simple_repeat 2 22 0 239 288 25 12 chr12 17671080 17671160 -126611329 + CT-rich Low_complexity Low_complexity 1 81 0 213 186 105 93 chr12 17671546 17671632 -126610857 - L2 LINE L2 -4 3309 3223 22 35 0 0 chr12 17671660 17671689 -126610800 + AT_rich Low_complexity Low_complexity 1 29 0 281 278 83 28 chr12 17672685 17672793 -126609696 - L2 LINE L2 -8 3305 3192 246 333 46 28 chr12 17672905 17673013 -126609476 + L2 LINE L2 3199 3308 -5 868 299 15 11 chr12 17673086 17673347 -126609142 - MIR SINE MIR 0 262 1 258 32 0 0 chr12 17676720 17676751 -126605738 + (CA)n Simple_repeat Simple_repeat 2 32 0 1928 270 102 28 chr12 17676751 17677637 -126604852 - L1ME3 LINE L1 -29 6133 5187 5742 197 32 5 chr12 17677637 17679254 -126603235 - L1MC1 LINE L1 -1 6401 4736 826 290 77 21 chr12 17679324 17680050 -126602439 - L1MC1 LINE L1 -3483 2732 2008 4432 321 77 45 chr12 17680367 17684123 -126598366 - HERV16 LTR ERVL -1130 4355 493 2000 196 65 7 chr12 17685549 17685952 -126596537 - MSTB LTR MaLR 0 426 1 201 244 0 0 chr12 17686233 17686278 -126596211 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 342 0 0 0 chr12 17687313 17687351 -126595138 + (TG)n Simple_repeat Simple_repeat 2 39 0 297 280 10 40 chr12 17689037 17689137 -126593352 - MIR SINE MIR -16 246 150 222 231 0 0 chr12 17689922 17689974 -126592515 + (TA)n Simple_repeat Simple_repeat 1 52 0 2269 196 42 2 chr12 17690016 17690465 -126592024 - MLT1C LTR MaLR 0 467 1 401 246 134 15 chr12 17690498 17690632 -126591857 - MIR3 SINE MIR -12 196 47 21 36 0 0 chr12 17690832 17690860 -126591629 + AT_rich Low_complexity Low_complexity 1 28 0 502 346 42 0 chr12 17690899 17691113 -126591376 - MIR SINE MIR -39 223 1 288 0 0 0 chr12 17691346 17691378 -126591111 + (A)n Simple_repeat Simple_repeat 1 32 0 591 264 20 0 chr12 17691669 17691817 -126590672 - MIR SINE MIR 0 262 112 183 267 156 0 chr12 17691928 17691973 -126590516 + L2 LINE L2 3212 3263 -9 187 340 0 0 chr12 17692555 17692605 -126589884 - L2 LINE L2 -16 3297 3248 28 0 0 0 chr12 17692612 17692640 -126589849 + AT_rich Low_complexity Low_complexity 1 28 0 205 189 57 0 chr12 17693724 17693777 -126588712 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 21 36 0 0 chr12 17696000 17696028 -126586461 + AT_rich Low_complexity Low_complexity 1 28 0 566 277 38 6 chr12 17696476 17696635 -126585854 + MIR SINE MIR 99 262 0 26 30 0 0 chr12 17697071 17697104 -126585385 + AT_rich Low_complexity Low_complexity 1 33 0 317 311 23 53 chr12 17699202 17699334 -126583155 - MIR SINE MIR -64 144 17 752 193 31 37 chr12 17699662 17699823 -126582666 - FRAM SINE Alu -17 159 1 1222 82 6 0 chr12 17699909 17700079 -126582410 + L1PA11 LINE L1 5999 6169 -5 324 318 131 28 chr12 17700453 17700667 -126581822 + MIR SINE MIR 9 244 -18 373 290 91 34 chr12 17701111 17701287 -126581202 - MLT1J2 LTR MaLR -24 426 241 2466 121 162 22 chr12 17701859 17702323 -126580166 + MER1A DNA MER1_type 1 529 0 379 214 71 79 chr12 17702629 17702755 -126579734 - MLT1J2 LTR MaLR -259 150 26 196 225 0 0 chr12 17705138 17705178 -126577311 + L2 LINE L2 3263 3302 -11 445 207 40 87 chr12 17705203 17705353 -126577136 + MLT1J LTR MaLR 4 146 -365 2205 119 0 16 chr12 17705652 17705962 -126576527 - AluSx SINE Alu -7 305 1 21 95 0 0 chr12 17707219 17707282 -126575207 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr12 17707867 17707889 -126574600 + AT_rich Low_complexity Low_complexity 1 22 0 294 73 0 0 chr12 17708379 17708420 -126574069 + (CA)n Simple_repeat Simple_repeat 1 41 0 734 200 45 73 chr12 17709631 17709851 -126572638 + MER20 DNA MER1_type 4 217 -2 1005 181 0 17 chr12 17710208 17710385 -126572104 + AluJb SINE Alu 137 310 -2 199 254 34 51 chr12 17712276 17712335 -126570154 - L2 LINE L2 -10 3303 3246 285 301 62 18 chr12 17712913 17713026 -126569463 - L2 LINE L2 -5 3267 3150 2267 108 0 0 chr12 17714505 17714801 -126567688 - AluSc SINE Alu -13 296 1 21 36 0 0 chr12 17715010 17715038 -126567451 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr12 17715130 17715173 -126567316 + AT_rich Low_complexity Low_complexity 1 43 0 1704 149 56 83 chr12 17715282 17715678 -126566811 - L1MB5 LINE L1 -8 6166 5782 2495 50 7 0 chr12 17715709 17716007 -126566482 - AluY SINE Alu -11 300 1 1752 175 0 7 chr12 17716009 17716306 -126566183 - AluJo SINE Alu -14 298 4 448 193 0 0 chr12 17716306 17716389 -126566100 - L1MC1 LINE L1 -15 6318 6236 1303 198 26 40 chr12 17716440 17716616 -126565873 + L1M4 LINE L1 4993 5163 -983 2275 111 0 3 chr12 17716616 17716914 -126565575 - AluSc SINE Alu -12 297 1 1303 198 26 40 chr12 17716914 17717086 -126565403 + L1M4 LINE L1 5163 5336 -810 809 201 21 107 chr12 17717147 17717262 -126565227 - MER58C DNA MER1_type -2205 215 92 633 183 26 0 chr12 17717262 17717377 -126565112 + FLAM_C SINE Alu 1 118 -15 189 74 0 0 chr12 17717380 17717407 -126565082 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 809 201 21 107 chr12 17717407 17717521 -126564968 - MER58C DNA MER1_type -2330 90 2 410 312 40 40 chr12 17717616 17717815 -126564674 + L1MEd LINE L1 535 733 -5472 759 289 48 29 chr12 17717975 17718499 -126563990 + L1MEd LINE L1 938 1339 -4866 274 275 150 6 chr12 17718540 17718707 -126563782 + L1MEd LINE L1 1565 1755 -4641 2137 122 0 0 chr12 17718824 17719120 -126563369 + AluSg SINE Alu 1 296 -14 734 282 73 63 chr12 17719999 17720520 -126561969 + L1MEd LINE L1 2379 2904 -3311 230 56 28 0 chr12 17720869 17720905 -126561584 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1884 155 118 45 chr12 17720911 17721310 -126561179 - MSTA LTR MaLR 0 428 1 594 313 60 30 chr12 17721407 17721771 -126560718 + L2 LINE L2 1793 2167 -1147 391 244 73 24 chr12 17721781 17721904 -126560585 - MER3 DNA MER1_type -7 202 74 326 254 15 46 chr12 17721965 17722095 -126560394 - L1MEd LINE L1 -4865 1254 1129 370 286 41 23 chr12 17722129 17722395 -126560094 + L1MEd LINE L1 2949 3219 -2996 849 335 76 16 chr12 17722408 17722844 -126559645 + L2 LINE L2 2850 3311 -2 335 313 79 51 chr12 17723771 17723985 -126558504 + L1MEd LINE L1 3575 3794 -2421 1310 121 5 47 chr12 17724130 17724345 -126558144 - AluJo SINE Alu -23 289 84 231 301 44 48 chr12 17724506 17724712 -126557777 + HAL1 LINE L1 2303 2507 0 271 334 142 22 chr12 17724727 17725037 -126557452 + L2 LINE L2 2727 3059 -213 30 77 0 0 chr12 17725126 17725191 -126557298 + AT_rich Low_complexity Low_complexity 1 65 0 1392 208 7 18 chr12 17725301 17725625 -126556864 + AluJo SINE Alu 3 323 0 232 293 40 0 chr12 17726110 17726185 -126556304 - MIR SINE MIR -124 138 61 1022 261 28 47 chr12 17726381 17726454 -126556035 + MLT1I LTR MaLR 98 171 -238 1761 185 3 3 chr12 17726454 17726757 -126555732 + AluJo SINE Alu 1 303 -9 1022 261 28 47 chr12 17726757 17727001 -126555488 + MLT1I LTR MaLR 171 409 0 350 339 144 6 chr12 17727069 17727249 -126555240 - MIR SINE MIR -27 235 31 230 347 89 8 chr12 17727874 17727998 -126554491 + MIR3 SINE MIR 2 135 -73 417 342 33 41 chr12 17729410 17729653 -126552836 + MLT1K LTR MaLR 137 377 -211 690 240 63 0 chr12 17729804 17729979 -126552510 + MER5A DNA MER1_type 4 189 0 266 333 53 38 chr12 17731439 17731571 -126550918 + MIR SINE MIR 26 159 -103 1652 174 22 6 chr12 17731633 17731955 -126550534 + L1PA16 LINE L1 5838 6164 -2 476 303 51 63 chr12 17732454 17732867 -126549622 + L1ME2 LINE L1 5471 5878 -286 1443 134 50 23 chr12 17732955 17733216 -126549273 - L1PA16 LINE L1 -9 6157 5890 318 250 107 79 chr12 17734249 17734389 -126548100 - MER5A DNA MER1_type -3 186 43 230 236 36 0 chr12 17737131 17737186 -126545303 + L2 LINE L2 3254 3310 -3 2072 112 26 10 chr12 17737297 17737600 -126544889 + AluSc SINE Alu 1 308 -1 22 35 0 0 chr12 17738231 17738260 -126544229 + AT_rich Low_complexity Low_complexity 1 29 0 29 78 0 0 chr12 17738347 17738411 -126544078 + AT_rich Low_complexity Low_complexity 1 64 0 21 36 0 0 chr12 17738970 17738998 -126543491 + AT_rich Low_complexity Low_complexity 1 28 0 2611 190 0 30 chr12 17740061 17740560 -126541929 + MER66B LTR ERV1 3 486 0 669 292 60 17 chr12 17742279 17742512 -126539977 - MER102b DNA MER1_type -3 338 96 1649 226 80 23 chr12 17742545 17742982 -126539507 - LTR40b LTR ERVL 0 462 1 498 243 100 0 chr12 17743055 17743195 -126539294 + MER58A DNA MER1_type 3 156 0 276 328 93 98 chr12 17743333 17743784 -126538705 - L2 LINE L2 -8 3264 2816 2134 120 141 8 chr12 17744001 17744369 -126538120 - MSTA LTR MaLR -11 417 1 215 423 39 0 chr12 17744568 17744672 -126537817 + L2 LINE L2 3146 3253 -19 225 65 0 0 chr12 17744680 17744711 -126537778 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 191 361 12 36 chr12 17744921 17745004 -126537485 + L2 LINE L2 3187 3267 -5 397 291 168 17 chr12 17746372 17746551 -126535938 + MIR SINE MIR 57 262 0 198 230 23 11 chr12 17746745 17746832 -126535657 + GA-rich Low_complexity Low_complexity 1 88 0 21 71 0 0 chr12 17747570 17747612 -126534877 + AT_rich Low_complexity Low_complexity 1 42 0 218 200 0 0 chr12 17749586 17749626 -126532863 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 1952 110 76 0 chr12 17751843 17752134 -126530355 + AluSq SINE Alu 1 313 0 354 350 38 6 chr12 17752920 17753080 -126529409 + MIR3 SINE MIR 32 196 -12 1783 200 96 3 chr12 17753694 17754049 -126528440 + MSTD LTR MaLR 1 388 -8 247 191 0 0 chr12 17754060 17754102 -126528387 + MSTD LTR MaLR 355 396 0 819 343 89 28 chr12 17754556 17755121 -126527368 + L2 LINE L2 2717 3309 -4 450 291 146 28 chr12 17755513 17755726 -126526763 + MIR SINE MIR 1 238 -24 246 325 72 0 chr12 17756610 17756693 -126525796 - MIR3 SINE MIR -17 191 103 188 366 98 22 chr12 17756803 17756986 -126525503 - L2 LINE L2 -86 3186 2990 324 325 79 16 chr12 17759706 17759832 -126522657 + MIR SINE MIR 18 151 -57 490 287 120 35 chr12 17760131 17760448 -126522041 - MARNA DNA Mariner -233 353 10 262 319 14 0 chr12 17761407 17761476 -126521013 - MIR SINE MIR -71 191 122 7750 12 0 0 chr12 17761622 17762742 -126519747 - L1PA3 LINE L1 0 6155 5030 259 306 105 16 chr12 17762746 17762870 -126519619 - MIR3 SINE MIR -63 145 11 22 0 0 0 chr12 17763688 17763710 -126518779 + AT_rich Low_complexity Low_complexity 1 22 0 215 324 83 66 chr12 17764343 17764519 -126517970 - MIR SINE MIR -70 138 16 273 355 57 72 chr12 17765862 17766127 -126516362 + L2 LINE L2 3008 3268 -4 234 0 0 0 chr12 17767630 17767656 -126514833 + (A)n Simple_repeat Simple_repeat 1 26 0 752 115 33 8 chr12 17767978 17768100 -126514389 + FRAM SINE Alu 30 154 -22 412 368 54 28 chr12 17770172 17770583 -126511906 - L2 LINE L2 -107 3165 2753 463 299 142 18 chr12 17772222 17772503 -126509986 + L3b LINE CR1 1102 1417 -166 381 22 0 0 chr12 17772546 17772592 -126509897 + (TG)n Simple_repeat Simple_repeat 2 47 0 2250 114 17 8 chr12 17773030 17773382 -126509107 - THE1A LTR MaLR 0 355 1 11214 104 7 0 chr12 17773382 17774951 -126507538 - THE1A-int LTR MaLR 0 1580 1 2124 129 8 36 chr12 17774951 17775079 -126507410 - THE1A LTR MaLR 0 355 225 2464 66 0 0 chr12 17775079 17775381 -126507108 - AluY SINE Alu -9 302 1 2124 129 8 36 chr12 17775381 17775617 -126506872 - THE1A LTR MaLR -130 225 1 24 32 0 0 chr12 17775715 17775746 -126506743 + AT_rich Low_complexity Low_complexity 1 31 0 849 199 0 0 chr12 17776748 17776899 -126505590 - AluJb SINE Alu -14 298 148 1760 139 73 0 chr12 17777122 17777410 -126505079 + AluSx SINE Alu 1 309 -3 236 250 0 17 chr12 17778751 17778811 -126503678 - MLT1J LTR MaLR -451 60 2 283 317 113 68 chr12 17779394 17779659 -126502830 + L2 LINE L2 2990 3266 -6 460 308 55 28 chr12 17780052 17780234 -126502255 - MIR SINE MIR -28 234 48 387 0 0 0 chr12 17780695 17780738 -126501751 + (CA)n Simple_repeat Simple_repeat 2 44 0 22 70 0 0 chr12 17781481 17781524 -126500965 + AT_rich Low_complexity Low_complexity 1 43 0 390 262 252 0 chr12 17782412 17782618 -126499871 + MIR SINE MIR 5 262 0 230 239 0 0 chr12 17784081 17784127 -126498362 + L2 LINE L2 3225 3270 -2 298 348 64 42 chr12 17789551 17789787 -126492702 - MIR SINE MIR -3 259 19 743 230 40 50 chr12 17791186 17791211 -126491278 + MIR SINE MIR 29 53 -209 1543 54 0 27 chr12 17791211 17791435 -126491054 - AluY SINE Alu -93 218 1 743 230 40 50 chr12 17791435 17791609 -126490880 + MIR SINE MIR 53 226 -36 397 278 138 64 chr12 17793675 17793999 -126488490 + L1ME4a LINE L1 5290 5617 -504 385 342 41 22 chr12 17794179 17794384 -126488105 - MIR SINE MIR -44 218 16 261 261 53 63 chr12 17794534 17794833 -126487656 + L1ME4a LINE L1 5822 6117 -4 462 284 103 58 chr12 17795287 17795530 -126486959 - MIR SINE MIR -4 258 5 583 296 6 45 chr12 17795845 17796021 -126486468 - MIR3 SINE MIR -25 183 15 1706 150 7 36 chr12 17796146 17796453 -126486036 + AluJo SINE Alu 5 302 -10 29 28 0 0 chr12 17796467 17796503 -126485986 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr12 17798535 17798557 -126483932 + AT_rich Low_complexity Low_complexity 1 22 0 1361 219 4 14 chr12 17801282 17801560 -126480929 - AluJo SINE Alu -35 277 3 4169 132 24 28 chr12 17802189 17802457 -126480032 + L1MA6 LINE L1 5516 5784 -516 513 0 0 0 chr12 17802457 17802514 -126479975 + (TA)n Simple_repeat Simple_repeat 1 57 0 4169 132 24 28 chr12 17802514 17803028 -126479461 + L1MA6 LINE L1 5784 6295 -5 1656 112 0 5 chr12 17803447 17803702 -126478787 + AluSq SINE Alu 62 315 0 1149 177 67 41 chr12 17804947 17805263 -126477226 + MER33 DNA MER1_type 1 324 0 210 333 56 0 chr12 17805688 17805760 -126476729 - MIR3 SINE MIR -119 89 14 720 12 0 0 chr12 17807432 17807516 -126474973 + L1PA3 LINE L1 6068 6151 -4 21 0 0 0 chr12 17807550 17807571 -126474918 + AT_rich Low_complexity Low_complexity 1 21 0 334 270 63 8 chr12 17807976 17808102 -126474387 - MER94 DNA DNA -1 133 1 198 0 0 0 chr12 17808813 17808835 -126473654 + (T)n Simple_repeat Simple_repeat 1 22 0 206 102 85 0 chr12 17809140 17809199 -126473290 + (TA)n Simple_repeat Simple_repeat 1 64 0 264 295 58 98 chr12 17811244 17811417 -126471072 - MIR SINE MIR -65 143 21 756 242 41 5 chr12 17811955 17812149 -126470340 - MIR SINE MIR -1 261 61 252 266 63 91 chr12 17813982 17814125 -126468364 - L2 LINE L2 -16 3297 3159 194 178 44 0 chr12 17814202 17814247 -126468242 + L2 LINE L2 2717 2763 -551 464 156 0 21 chr12 17814366 17814462 -126468027 + MER53 DNA DNA 94 187 -2 2096 106 0 0 chr12 17815009 17815333 -126467156 + AluSx SINE Alu 1 324 0 269 268 89 48 chr12 17816191 17816359 -126466130 + L1MC5 LINE L1 7049 7223 -738 230 321 89 12 chr12 17816389 17816557 -126465932 + L1MC4a LINE L1 7170 7350 -458 759 160 0 15 chr12 17816607 17816738 -126465751 - FLAM_A SINE Alu -4 129 1 364 290 101 32 chr12 17816741 17817061 -126465428 + L1MC4 LINE L1 7312 7749 -293 363 282 105 24 chr12 17817097 17817306 -126465183 + L1ME4a LINE L1 5879 6104 -17 505 282 87 29 chr12 17817696 17817902 -126464587 + MIR SINE MIR 1 218 -44 401 306 0 9 chr12 17817935 17818046 -126464443 + L2 LINE L2 3190 3299 -14 475 328 86 14 chr12 17818412 17818924 -126463565 - L1M4 LINE L1 -1932 4214 3666 419 360 118 28 chr12 17818964 17819239 -126463250 - L2 LINE L2 -961 2353 2104 2241 103 3 0 chr12 17819239 17819540 -126462949 + AluSx SINE Alu 1 302 -10 419 360 118 28 chr12 17819540 17820080 -126462409 - L2 LINE L2 -1210 2104 1465 241 323 74 117 chr12 17820617 17820967 -126461522 - L2 LINE L2 -2726 588 254 431 286 101 30 chr12 17821472 17821640 -126460849 + Charlie8 DNA MER1_type 87 266 -2151 28 71 0 0 chr12 17824676 17824732 -126457757 + AT_rich Low_complexity Low_complexity 1 56 0 183 305 116 66 chr12 17825097 17825356 -126457133 - L3b LINE CR1 -149 1434 1163 195 340 58 0 chr12 17825457 17825560 -126456929 - MIR SINE MIR -115 147 39 21 36 0 0 chr12 17825947 17825975 -126456514 + AT_rich Low_complexity Low_complexity 1 28 0 967 301 91 9 chr12 17827642 17828084 -126454405 + L2 LINE L2 2836 3313 0 21 0 0 0 chr12 17832654 17832675 -126449814 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 17833380 17833404 -126449085 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr12 17833826 17833857 -126448632 + AT_rich Low_complexity Low_complexity 1 31 0 318 50 0 0 chr12 17836765 17836805 -126445684 + (A)n Simple_repeat Simple_repeat 1 40 0 261 231 11 22 chr12 17838143 17838234 -126444255 + (TA)n Simple_repeat Simple_repeat 2 91 0 354 255 0 20 chr12 17838428 17838526 -126443963 - MIR3 SINE MIR -23 185 90 21 0 0 0 chr12 17840309 17840330 -126442159 + AT_rich Low_complexity Low_complexity 1 21 0 180 228 0 0 chr12 17843012 17843069 -126439420 + CT-rich Low_complexity Low_complexity 3 59 0 249 180 0 0 chr12 17844601 17844651 -126437838 + (TG)n Simple_repeat Simple_repeat 2 51 0 356 71 18 0 chr12 17845177 17845233 -126437256 + (GA)n Simple_repeat Simple_repeat 1 57 0 25 0 0 0 chr12 17846386 17846411 -126436078 + AT_rich Low_complexity Low_complexity 1 25 0 197 300 50 12 chr12 17850199 17850279 -126432210 + MIR SINE MIR 180 262 0 280 341 63 40 chr12 17850404 17850530 -126431959 + L2 LINE L2 3136 3264 -8 530 167 8 56 chr12 17850668 17850794 -126431695 + AluSg/x SINE Alu 135 254 -56 192 40 0 0 chr12 17850852 17850877 -126431612 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 246 303 220 0 chr12 17850947 17851056 -126431433 + L2 LINE L2 3137 3269 -3 315 358 89 57 chr12 17852504 17853155 -126429334 + HAL1b LINE L1 26 697 -651 1475 188 117 0 chr12 17853395 17853703 -126428786 - MER2 DNA MER2_type 0 344 1 199 365 113 25 chr12 17853777 17853936 -126428553 - MIR SINE MIR -68 194 22 1251 234 8 86 chr12 17854281 17854758 -126427731 - L1MD3 LINE L1 0 8037 7613 200 170 38 19 chr12 17855080 17855133 -126427356 + GA-rich Low_complexity Low_complexity 2 55 0 249 307 73 49 chr12 17856347 17856554 -126425935 - MLT1G1 LTR MaLR -313 229 20 197 358 42 17 chr12 17856905 17857025 -126425464 + MIR3 SINE MIR 69 191 -17 699 258 58 11 chr12 17858080 17858270 -126424219 + MER3 DNA MER1_type 2 200 -9 223 336 61 30 chr12 17858542 17858673 -126423816 + L2 LINE L2 3179 3313 0 236 157 0 78 chr12 17859406 17859457 -126423032 + MIR3 SINE MIR 154 200 -8 462 289 103 47 chr12 17860690 17860922 -126421567 - MIR SINE MIR -5 257 13 28 61 0 0 chr12 17862014 17862063 -126420426 + AT_rich Low_complexity Low_complexity 1 49 0 1183 179 0 0 chr12 17862064 17862265 -126420224 - AluJo SINE Alu -27 285 85 180 183 56 99 chr12 17862400 17862471 -126420018 + MIR SINE MIR 145 212 -50 27 29 0 0 chr12 17863446 17863480 -126419009 + AT_rich Low_complexity Low_complexity 1 34 0 22 80 0 0 chr12 17863812 17863862 -126418627 + AT_rich Low_complexity Low_complexity 1 50 0 2219 75 0 0 chr12 17863889 17864187 -126418302 + AluY SINE Alu 15 312 0 1548 142 34 4 chr12 17865007 17865240 -126417249 + AluSx SINE Alu 3 242 -70 654 37 0 0 chr12 17865281 17865362 -126417127 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 1619 174 0 0 chr12 17865594 17865870 -126416619 + AluSx SINE Alu 1 276 -36 183 80 0 0 chr12 17865872 17865897 -126416592 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 211 385 68 7 chr12 17866325 17866473 -126416016 - MIR SINE MIR -55 207 51 321 89 0 0 chr12 17867333 17867378 -126415111 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2178 132 0 0 chr12 17867527 17867837 -126414652 - AluSx SINE Alu -2 310 1 504 85 51 0 chr12 17868376 17868494 -126413995 + (TA)n Simple_repeat Simple_repeat 1 124 0 1493 223 7 3 chr12 17868494 17868786 -126413703 - AluJo SINE Alu -19 293 1 23 33 0 0 chr12 17869332 17869362 -126413127 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 17870159 17870180 -126412309 + AT_rich Low_complexity Low_complexity 1 21 0 22 88 0 0 chr12 17870831 17870888 -126411601 + AT_rich Low_complexity Low_complexity 1 57 0 389 276 20 0 chr12 17871873 17871971 -126410518 - MER58B DNA MER1_type -4 337 238 230 306 108 13 chr12 17872084 17872241 -126410248 + MIR3 SINE MIR 23 194 -14 231 248 26 34 chr12 17872265 17872382 -126410107 - L1MC4 LINE L1 -1314 6728 6613 197 171 45 0 chr12 17872389 17872477 -126410012 + (TA)n Simple_repeat Simple_repeat 1 92 0 299 202 9 0 chr12 17872505 17872614 -126409875 + (TA)n Simple_repeat Simple_repeat 1 110 0 270 148 0 131 chr12 17872614 17872675 -126409814 - AluJo SINE Alu -15 287 235 821 198 0 70 chr12 17872675 17872847 -126409642 - AluJo SINE Alu -152 160 1 1921 98 83 14 chr12 17873655 17873932 -126408557 + AluSq SINE Alu 1 296 -17 2067 92 20 26 chr12 17875468 17875774 -126406715 - AluSq SINE Alu -9 304 1 2519 83 11 51 chr12 17875814 17876022 -126406467 - THE1B LTR MaLR -4 360 172 2372 80 0 3 chr12 17876022 17876334 -126406155 + AluY SINE Alu 1 311 0 2519 83 11 51 chr12 17876334 17876500 -126405989 - THE1B LTR MaLR -192 172 1 9547 105 35 60 chr12 17876500 17876578 -126405911 - THE1B-int LTR MaLR 0 1580 1502 2123 101 7 10 chr12 17876578 17876876 -126405613 - AluSg SINE Alu -13 297 1 9547 105 35 60 chr12 17876876 17878417 -126404072 - THE1B-int LTR MaLR -78 1502 1 1341 140 103 120 chr12 17878417 17878685 -126403804 - THE1B LTR MaLR 0 364 176 1873 144 3 17 chr12 17878685 17878977 -126403512 - AluSx SINE Alu -24 288 1 1341 140 103 120 chr12 17878977 17879151 -126403338 - THE1B LTR MaLR -188 176 1 819 203 28 6 chr12 17879747 17879924 -126402565 - MER20 DNA MER1_type -2 217 37 190 395 0 0 chr12 17880356 17880432 -126402057 + L2 LINE L2 3007 3082 -190 370 316 52 16 chr12 17880503 17880696 -126401793 - HAL1b LINE L1 -1063 285 86 25 0 0 0 chr12 17880925 17880950 -126401539 + AT_rich Low_complexity Low_complexity 1 25 0 237 297 0 14 chr12 17881131 17881205 -126401284 + T-rich Low_complexity Low_complexity 2 74 0 1001 225 59 74 chr12 17881720 17882111 -126400378 - L1ME1 LINE L1 0 6178 5790 2081 276 54 24 chr12 17882178 17882931 -126399558 - L1MEc LINE L1 -5528 868 93 302 257 14 0 chr12 17883294 17883368 -126399121 + GA-rich Low_complexity Low_complexity 4 78 0 2215 121 0 6 chr12 17883804 17884117 -126398372 - AluSq SINE Alu 0 313 3 806 162 7 0 chr12 17884633 17884769 -126397720 - MLT1D LTR MaLR 0 505 369 4152 276 47 35 chr12 17884776 17885507 -126396982 + L1MC2 LINE L1 1535 2256 -3959 351 0 0 0 chr12 17885507 17885546 -126396943 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1638 168 11 4 chr12 17885549 17885829 -126396660 - AluSx SINE Alu -30 282 1 4152 276 47 35 chr12 17885829 17885910 -126396579 + L1MC2 LINE L1 2257 2336 -3879 1731 78 42 95 chr12 17885910 17886193 -126396296 + AluY SINE Alu 1 268 -43 210 37 0 0 chr12 17886197 17886224 -126396265 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4152 276 47 35 chr12 17886224 17888340 -126394149 + L1MC2 LINE L1 2338 4501 -1714 2618 169 7 2 chr12 17888340 17888766 -126393723 - MSTA LTR MaLR 0 428 1 4152 276 47 35 chr12 17888766 17888933 -126393556 + L1MC2 LINE L1 4501 4665 -1550 * 5041 128 27 23 chr12 17888928 17889769 -126392720 - L1PA13 LINE L1 -1 6162 5318 17810 179 18 7 chr12 17889772 17892675 -126389814 - L1PA13 LINE L1 -11 7590 4721 2023 128 75 20 chr12 17892675 17893020 -126389469 - THE1B LTR MaLR 0 364 1 17810 179 18 7 chr12 17893020 17895807 -126386682 - L1PA13 LINE L1 -2880 4721 1832 477 193 29 43 chr12 17895807 17895947 -126386542 + L1MC2 LINE L1 4649 4786 -1429 2142 124 0 0 chr12 17895948 17896239 -126386250 + AluSc SINE Alu 1 291 -18 2685 208 40 13 chr12 17896244 17897169 -126385320 + L1MEc LINE L1 4751 5698 -753 521 259 0 7 chr12 17897172 17897311 -126385178 + L1MC2 LINE L1 4781 4918 -1297 3052 204 35 11 chr12 17897318 17898013 -126384476 + L1MC2 LINE L1 5701 6411 -2 527 239 62 8 chr12 17898015 17898145 -126384344 - MLT1D LTR MaLR -121 384 248 778 53 53 24 chr12 17899289 17899458 -126383031 + (TCTA)n Simple_repeat Simple_repeat 3 176 0 1836 104 4 0 chr12 17900089 17900330 -126382159 + AluSp SINE Alu 1 242 -71 1770 147 0 18 chr12 17900332 17900617 -126381872 + AluSx SINE Alu 26 305 -7 637 310 67 64 chr12 17900982 17901311 -126381178 - L2 LINE L2 -411 2903 2574 567 224 32 78 chr12 17901409 17901628 -126380861 + L1MC5 LINE L1 7297 7505 -456 501 261 59 0 chr12 17901628 17901747 -126380742 + MER20 DNA MER1_type 1 126 -93 252 200 92 15 chr12 17901805 17901870 -126380619 + MER20 DNA MER1_type 146 215 -4 953 229 127 14 chr12 17901872 17902235 -126380254 + L1MC5 LINE L1 7498 7901 -60 21 36 0 0 chr12 17902439 17902467 -126380022 + AT_rich Low_complexity Low_complexity 1 28 0 228 355 26 16 chr12 17902569 17902758 -126379731 - L1ME LINE L1 -454 5667 5477 21 0 0 0 chr12 17902793 17902814 -126379675 + AT_rich Low_complexity Low_complexity 1 21 0 1285 147 14 14 chr12 17902890 17903130 -126379359 + AluSg/x SINE Alu 75 314 0 238 321 47 9 chr12 17903153 17903365 -126379124 - L1ME LINE L1 -1549 4597 4378 21 0 0 0 chr12 17906556 17906577 -126375912 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr12 17907983 17908032 -126374457 + AT_rich Low_complexity Low_complexity 1 49 0 377 323 38 15 chr12 17908368 17908501 -126373988 - L3b LINE CR1 -23 1560 1425 379 271 151 55 chr12 17908821 17909039 -126373450 - Charlie8 DNA MER1_type -415 2002 1764 35 54 0 0 chr12 17909333 17909389 -126373100 + AT_rich Low_complexity Low_complexity 1 56 0 3217 286 122 37 chr12 17909549 17911302 -126371187 - Charlie8 DNA MER1_type -341 2076 176 252 0 0 0 chr12 17911442 17911470 -126371019 + (T)n Simple_repeat Simple_repeat 1 28 0 332 220 110 9 chr12 17911687 17911796 -126370693 + MIR SINE MIR 86 205 -57 3786 157 16 3 chr12 17911827 17912496 -126369993 - L1MC1 LINE L1 -6 6327 5650 2450 251 12 25 chr12 17912496 17913248 -126369241 - L1MC1 LINE L1 -985 5161 4420 21 0 0 0 chr12 17913283 17913304 -126369185 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr12 17913454 17913500 -126368989 + AT_rich Low_complexity Low_complexity 1 46 0 402 329 50 6 chr12 17913526 17913687 -126368802 + MIR SINE MIR 23 190 -72 412 255 97 36 chr12 17913799 17914046 -126368443 - L1ME4a LINE L1 -5 6116 5855 560 128 0 0 chr12 17914483 17914569 -126367920 + L1MC1 LINE L1 5894 5979 -354 646 268 169 6 chr12 17916285 17916468 -126366021 - MIR SINE MIR 0 262 50 22 0 0 0 chr12 17918028 17918050 -126364439 + AT_rich Low_complexity Low_complexity 1 22 0 1467 158 142 3 chr12 17918296 17918613 -126363876 - MER46B DNA MER2_type 0 236 1 1384 120 33 49 chr12 17918619 17918868 -126363621 + L1MC1 LINE L1 5935 6178 -155 414 127 89 0 chr12 17918881 17918960 -126363529 + L1MC1 LINE L1 6231 6316 -17 3070 273 78 102 chr12 17918981 17919083 -126363406 + L2 LINE L2 1360 1463 -1851 1722 199 64 0 chr12 17919083 17919425 -126363064 + MLT1A1 LTR MaLR 1 364 -1 3070 273 78 102 chr12 17919425 17920139 -126362350 + L2 LINE L2 1463 2192 -1122 597 219 9 0 chr12 17920139 17920244 -126362245 - FLAM_A SINE Alu -29 113 8 3070 273 78 102 chr12 17920244 17920957 -126361532 + L2 LINE L2 2192 2955 -359 24 53 0 0 chr12 17922123 17922161 -126360328 + AT_rich Low_complexity Low_complexity 1 38 0 214 238 0 0 chr12 17922447 17922489 -126360000 + CT-rich Low_complexity Low_complexity 3 44 0 205 283 0 0 chr12 17923265 17923311 -126359178 - L2 LINE L2 -6 3307 3262 1780 148 3 40 chr12 17923386 17923690 -126358799 + AluJb SINE Alu 1 293 -19 26 0 0 0 chr12 17923694 17923720 -126358769 + AT_rich Low_complexity Low_complexity 1 26 0 2029 208 0 3 chr12 17923725 17924091 -126358398 - MLT1A1 LTR MaLR 0 365 1 23 33 0 0 chr12 17925599 17925629 -126356860 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr12 17925670 17925693 -126356796 + AT_rich Low_complexity Low_complexity 1 23 0 238 275 114 12 chr12 17925927 17926026 -126356463 + MIR SINE MIR 45 153 -55 411 65 26 39 chr12 17926250 17926327 -126356162 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 212 129 0 0 chr12 17926327 17926358 -126356131 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 1942 161 0 0 chr12 17926362 17926660 -126355829 - AluSx SINE Alu -14 298 1 213 132 0 0 chr12 17927107 17927145 -126355344 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 976 253 64 4 chr12 17927465 17927698 -126354791 - MIR SINE MIR -5 257 11 407 269 70 108 chr12 17928067 17928483 -126354006 + MLT1K LTR MaLR 69 468 -120 552 322 99 61 chr12 17928497 17928922 -126353567 + L2 LINE L2 2873 3313 0 8763 202 28 33 chr12 17929123 17931944 -126350545 + L1MA6 LINE L1 3371 6173 -127 535 187 8 8 chr12 17931951 17932074 -126350415 + GA-rich Low_complexity Low_complexity 2 124 0 784 152 0 0 chr12 17932103 17932235 -126350254 + L1MA9 LINE L1 6179 6310 -2 22 0 0 0 chr12 17932263 17932285 -126350204 + AT_rich Low_complexity Low_complexity 1 22 0 1823 201 31 10 chr12 17932469 17932857 -126349632 + MSTD LTR MaLR 1 396 0 5690 242 114 26 chr12 17932859 17934449 -126348040 + MSTD-int LTR MaLR 2 1731 -4 2007 208 8 8 chr12 17934453 17934847 -126347642 + MSTD LTR MaLR 1 394 -2 199 360 142 40 chr12 17935183 17935663 -126346826 - L2 LINE L2 -565 2749 2221 1316 163 51 12 chr12 17935679 17935936 -126346553 - ORSL DNA AcHobo 0 275 9 2220 88 10 0 chr12 17937338 17937634 -126344855 - AluSq SINE Alu -14 299 1 191 350 169 38 chr12 17938067 17938761 -126343728 - L2 LINE L2 -1215 2099 1315 834 258 65 9 chr12 17939150 17939379 -126343110 - MIR SINE MIR 0 262 21 28 29 0 0 chr12 17940801 17940836 -126341653 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr12 17941029 17941053 -126341436 + AT_rich Low_complexity Low_complexity 1 24 0 266 266 117 8 chr12 17941056 17941184 -126341305 - L1ME4a LINE L1 -3 6118 5977 1978 149 3 0 chr12 17941432 17941728 -126340761 + AluSq SINE Alu 3 299 -14 548 306 43 47 chr12 17941744 17942002 -126340487 - MLT1I LTR MaLR -82 327 71 430 139 0 0 chr12 17942110 17942182 -126340307 + L1MA4A LINE L1 6209 6280 -23 24 32 0 0 chr12 17942278 17942309 -126340180 + AT_rich Low_complexity Low_complexity 1 31 0 307 359 75 46 chr12 17942532 17943023 -126339466 + L2 LINE L2 2722 3224 -48 22 0 0 0 chr12 17943630 17943652 -126338837 + AT_rich Low_complexity Low_complexity 1 22 0 15253 28 3 2 chr12 17943663 17945515 -126336974 - L1PA2 LINE L1 -1520 4626 2772 7843 13 0 0 chr12 17945515 17947067 -126335422 + L1PA2 LINE L1 4604 6155 0 25 51 0 0 chr12 17947346 17947385 -126335104 + AT_rich Low_complexity Low_complexity 1 39 0 414 252 42 17 chr12 17948610 17948729 -126333760 - MIR SINE MIR -94 168 47 400 351 109 9 chr12 17949006 17949239 -126333250 + MIR SINE MIR 3 256 -6 2314 40 4 0 chr12 17949376 17949687 -126332802 - AluY SINE Alu 0 320 9 229 342 0 13 chr12 17950013 17950089 -126332400 + L2 LINE L2 2625 2699 -615 217 250 0 0 chr12 17950266 17950314 -126332175 + L2 LINE L2 3261 3308 -5 2257 88 0 0 chr12 17950699 17950996 -126331493 - AluY SINE Alu -10 301 5 589 306 58 21 chr12 17951998 17952240 -126330249 - MIR SINE MIR 0 262 12 565 283 64 60 chr12 17956573 17956806 -126325683 - MIR SINE MIR 0 262 29 4014 168 62 50 chr12 17957326 17957839 -126324650 + MER4D LTR ERV1 1 530 -373 2087 109 0 82 chr12 17957839 17958179 -126324310 + AluSx SINE Alu 1 312 0 4014 168 62 50 chr12 17958179 17958558 -126323931 + MER4D LTR ERV1 530 903 0 250 325 153 16 chr12 17958753 17959008 -126323481 - L2 LINE L2 -779 2535 2246 759 333 125 15 chr12 17959250 17960166 -126322323 - L2 LINE L2 -23 3290 2277 515 16 16 0 chr12 17960276 17960340 -126322149 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 191 288 61 0 chr12 17961015 17961081 -126321408 - L2 LINE L2 -959 2355 2286 197 328 69 0 chr12 17961823 17961881 -126320608 + L2 LINE L2 3194 3255 -17 183 148 0 0 chr12 17962242 17962269 -126320220 + L2 LINE L2 3267 3293 -20 834 39 0 0 chr12 17962832 17962934 -126319555 + (TTCC)n Simple_repeat Simple_repeat 1 102 0 347 290 60 10 chr12 17963489 17963589 -126318900 - L2 LINE L2 -21 3251 3147 838 300 48 31 chr12 17963707 17964060 -126318429 + L2 LINE L2 2955 3313 0 21 0 0 0 chr12 17964687 17964708 -126317781 + AT_rich Low_complexity Low_complexity 1 21 0 665 289 27 51 chr12 17965236 17965492 -126316997 + MIR SINE MIR 13 262 0 206 116 23 0 chr12 17965781 17965824 -126316665 + A-rich Low_complexity Low_complexity 2 45 0 1985 115 0 4 chr12 17965838 17966116 -126316373 - AluSx SINE Alu -25 287 11 2194 202 131 24 chr12 17966812 17967516 -126314973 + LTR1B LTR ERV1 1 826 0 24 0 0 0 chr12 17967699 17967723 -126314766 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr12 17967866 17967893 -126314596 + (CA)n Simple_repeat Simple_repeat 2 28 0 826 169 49 0 chr12 17968516 17968658 -126313831 + MSTB1 LTR MaLR 4 152 -274 1412 158 54 0 chr12 17968956 17969197 -126313292 + MSTB1 LTR MaLR 157 410 -22 217 188 21 42 chr12 17969487 17969535 -126312954 + MIR SINE MIR 110 151 -57 213 302 143 8 chr12 17969745 17969871 -126312618 + MIR SINE MIR 96 238 -24 256 57 0 75 chr12 17970022 17970075 -126312414 + (GAAAA)n Simple_repeat Simple_repeat 3 51 0 2235 48 0 0 chr12 17970271 17970542 -126311947 - L1PA5 LINE L1 -498 5656 5386 3987 47 0 2 chr12 17970542 17971033 -126311456 + L1PA5 LINE L1 5661 6151 -3 217 193 52 46 chr12 17971921 17972023 -126310466 - L2 LINE L2 -274 3039 2937 194 298 0 0 chr12 17972138 17972185 -126310304 + L2 LINE L2 3234 3280 -33 571 332 45 4 chr12 17972198 17972445 -126310044 + MIR SINE MIR 2 258 -4 251 308 0 0 chr12 17972519 17972584 -126309905 + MLT1J LTR MaLR 103 167 -344 3388 128 35 2 chr12 17972712 17973222 -126309267 + MER1A DNA MER1_type 1 527 0 202 332 190 17 chr12 17973584 17973936 -126308553 - L2 LINE L2 -613 2701 2289 273 197 0 0 chr12 17973942 17974008 -126308481 + (CAT)n Simple_repeat Simple_repeat 3 68 0 240 309 175 0 chr12 17974247 17974344 -126308145 + MIR SINE MIR 59 172 -90 432 273 61 23 chr12 17977532 17977664 -126304825 - MIR SINE MIR -87 175 39 234 105 0 0 chr12 17978046 17978084 -126304405 + (T)n Simple_repeat Simple_repeat 1 38 0 25 31 0 0 chr12 17980012 17980044 -126302445 + AT_rich Low_complexity Low_complexity 1 32 0 2245 95 0 0 chr12 17980235 17980529 -126301960 + AluY SINE Alu 1 294 -17 383 337 18 30 chr12 17980603 17980769 -126301720 - MIR SINE MIR -55 207 44 23 0 0 0 chr12 17981141 17981164 -126301325 + AT_rich Low_complexity Low_complexity 1 23 0 6524 102 3 9 chr12 17981918 17982871 -126299618 + L1MA1 LINE L1 5356 6302 0 24 77 0 0 chr12 17983367 17983419 -126299070 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr12 17983484 17983507 -126298982 + AT_rich Low_complexity Low_complexity 1 23 0 408 365 45 14 chr12 17984630 17984852 -126297637 + L3 LINE CR1 199 427 -1150 272 288 114 15 chr12 17984861 17984993 -126297496 - MLT1L LTR MaLR -135 480 336 567 281 107 43 chr12 17985224 17985552 -126296937 - MLT1J2 LTR MaLR -2 448 100 450 361 102 17 chr12 17985619 17985971 -126296518 + L3 LINE CR1 475 856 -721 184 289 58 0 chr12 17985979 17986031 -126296458 - L2 LINE L2 -5 3308 3254 267 343 157 11 chr12 17986199 17986377 -126296112 + L3 LINE CR1 976 1179 -398 236 320 104 32 chr12 17989125 17989250 -126293239 + L2 LINE L2 3139 3272 0 663 300 76 13 chr12 17989385 17989622 -126292867 + MIR SINE MIR 11 262 0 440 291 8 8 chr12 17989829 17989963 -126292526 - MIR SINE MIR 0 262 129 261 326 22 65 chr12 17989995 17990179 -126292310 + L2 LINE L2 3119 3294 -19 781 158 146 126 chr12 17990181 17990428 -126292061 + AluJo SINE Alu 43 294 -18 298 299 31 10 chr12 17990462 17990559 -126291930 - MIR SINE MIR -156 106 8 327 293 145 21 chr12 17990643 17990885 -126291604 + L2 LINE L2 2042 2313 -1001 278 217 20 113 chr12 17991141 17991271 -126291218 + MLT1J2 LTR MaLR 41 162 -284 227 140 20 0 chr12 17991654 17991704 -126290785 + L1ME4a LINE L1 6060 6110 -11 256 347 20 80 chr12 17991825 17992076 -126290413 + L2 LINE L2 2867 3102 -170 2175 120 3 0 chr12 17992162 17992463 -126290026 + AluSc SINE Alu 1 302 -7 334 182 0 0 chr12 17993576 17993631 -126288858 + MER45 DNA AcHobo 1526 1580 -1 1138 269 132 27 chr12 17995677 17996123 -126286366 - MER20B DNA MER1_type -287 496 4 1441 200 17 24 chr12 17996147 17996442 -126286047 - AluJo SINE Alu -19 293 1 206 388 3 3 chr12 17996649 17996771 -126285718 + MIR SINE MIR 30 150 -64 1753 160 0 4 chr12 17996825 17997087 -126285402 - AluJb SINE Alu -29 283 23 1952 161 69 62 chr12 17998194 17998616 -126283873 + MSTB LTR MaLR 2 426 0 372 256 158 24 chr12 17998837 17999001 -126283488 + L2 LINE L2 3127 3312 -1 5861 95 17 51 chr12 18003655 18004044 -126278445 + L1PA11 LINE L1 5284 5685 -489 1762 147 0 63 chr12 18004044 18004363 -126278126 + AluSx SINE Alu 6 304 -8 5861 95 17 51 chr12 18004363 18004892 -126277597 + L1PA11 LINE L1 5685 6171 -3 25986 89 6 41 chr12 18005506 18009318 -126273171 - L1PA7 LINE L1 -5 6149 2546 324 0 0 0 chr12 18009318 18009354 -126273135 + (TTA)n Simple_repeat Simple_repeat 2 37 0 25986 89 6 41 chr12 18009354 18010426 -126272063 - L1PA7 LINE L1 -3608 2546 1438 531 282 70 0 chr12 18010426 18010653 -126271836 + L1ME2 LINE L1 1618 1860 -4536 6944 239 60 24 chr12 18010671 18011144 -126271345 + L1ME2 LINE L1 2938 3392 -2841 1799 173 23 7 chr12 18011144 18011451 -126271038 - AluSx SINE Alu 0 312 1 6944 239 60 24 chr12 18011451 18013124 -126269365 + L1ME2 LINE L1 3392 5236 -997 2039 125 0 16 chr12 18013124 18013436 -126269053 - AluSc SINE Alu -2 307 1 6944 239 60 24 chr12 18013436 18014461 -126268028 + L1ME2 LINE L1 5236 6222 -11 649 142 0 22 chr12 18015210 18015344 -126267145 + (TTCC)n Simple_repeat Simple_repeat 4 134 0 5019 143 16 22 chr12 18016420 18017785 -126264704 + L1PA16 LINE L1 4808 6159 -7 1952 121 41 0 chr12 18018075 18018365 -126264124 + AluSg SINE Alu 1 302 -8 490 331 93 18 chr12 18018941 18019219 -126263270 + MLT1L LTR MaLR 306 604 -11 216 0 0 0 chr12 18019729 18019753 -126262736 + (CAATT)n Simple_repeat Simple_repeat 4 27 0 595 299 117 7 chr12 18019940 18020238 -126262251 + MLT1J LTR MaLR 3 333 -178 203 194 0 0 chr12 18023118 18023154 -126259335 + A-rich Low_complexity Low_complexity 1 36 0 285 354 6 6 chr12 18023459 18023617 -126258872 + (TA)n Simple_repeat Simple_repeat 1 158 0 22 35 0 0 chr12 18026542 18026571 -126255918 + AT_rich Low_complexity Low_complexity 1 29 0 279 324 65 0 chr12 18026966 18027105 -126255384 - L1MA5 LINE L1 -412 5888 5741 230 282 56 0 chr12 18027096 18027167 -126255322 + L1ME LINE L1 5562 5636 -534 * 1598 326 65 41 chr12 18027370 18028517 -126253972 - L2 LINE L2 -3 3310 2133 1284 297 102 52 chr12 18028931 18029666 -126252823 - L2 LINE L2 -1184 2130 1359 1645 210 79 50 chr12 18029668 18030285 -126252204 + MLT1E3 LTR MaLR 1 624 0 612 318 131 42 chr12 18030286 18030736 -126251753 - L2 LINE L2 -1960 1354 865 1151 213 4 9 chr12 18031111 18031336 -126251153 + MER58A DNA MER1_type 1 224 0 367 259 31 67 chr12 18032027 18032220 -126250269 - L1M4 LINE L1 -2876 3270 3085 508 328 104 55 chr12 18032669 18033364 -126249125 + L2 LINE L2 2470 3187 -85 280 303 30 38 chr12 18033746 18033878 -126248611 + MIR SINE MIR 82 212 -50 23 54 0 0 chr12 18033935 18033972 -126248517 + AT_rich Low_complexity Low_complexity 1 37 0 365 287 126 43 chr12 18034180 18034434 -126248055 - HAL1 LINE L1 -393 2114 1840 617 259 153 10 chr12 18034518 18034831 -126247658 - HAL1 LINE L1 -803 1704 1347 392 276 40 48 chr12 18034889 18035161 -126247328 - HAL1 LINE L1 -1249 1258 989 278 231 19 29 chr12 18035165 18035269 -126247220 + (TA)n Simple_repeat Simple_repeat 1 103 0 2430 186 32 12 chr12 18035269 18035768 -126246721 - Charlie1b DNA MER1_type 0 523 15 254 269 123 8 chr12 18035854 18035984 -126246505 - HAL1 LINE L1 -1553 954 810 1106 234 13 77 chr12 18036036 18036424 -126246065 - MER20B DNA MER1_type 0 783 421 2302 205 19 79 chr12 18036441 18037114 -126245375 - L1MA9 LINE L1 -38 6274 5642 854 230 42 121 chr12 18037114 18037519 -126244970 - MER20B DNA MER1_type -343 440 68 339 306 113 42 chr12 18037803 18038156 -126244333 - HAL1 LINE L1 -2129 378 1 548 299 93 50 chr12 18040033 18040334 -126242155 - LTR33A LTR ERVL -194 329 16 629 347 34 15 chr12 18040602 18040870 -126241619 - MERVL LTR ERVL -2160 3325 3053 2039 113 14 7 chr12 18041127 18041419 -126241070 - AluSx SINE Alu -18 294 1 1179 295 62 70 chr12 18041582 18041787 -126240702 + HERV16 LTR ERVL 100 305 -4691 2103 49 46 0 chr12 18041787 18042050 -126240439 + AluY SINE Alu 6 280 -31 321 47 0 0 chr12 18042052 18042095 -126240394 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 1179 295 62 70 chr12 18042095 18042738 -126239751 + HERV16 LTR ERVL 306 944 -4052 187 371 28 14 chr12 18043314 18043457 -126239032 + L2 LINE L2 2751 2895 -419 2646 159 19 8 chr12 18043560 18044043 -126238446 - L1PA16 LINE L1 -5 6161 5674 2042 127 15 26 chr12 18044602 18044941 -126237548 + MER1B DNA MER1_type 3 337 0 50 31 0 0 chr12 18045355 18045419 -126237070 + AT_rich Low_complexity Low_complexity 1 64 0 494 267 89 13 chr12 18045594 18045863 -126236626 - L2 LINE L2 0 3313 2980 225 0 0 0 chr12 18046585 18046610 -126235879 + (A)n Simple_repeat Simple_repeat 1 25 0 215 263 237 13 chr12 18047256 18047412 -126235077 - L2 LINE L2 -10 3303 3113 188 326 64 52 chr12 18047770 18047942 -126234547 - L2 LINE L2 -587 2727 2554 25 90 0 0 chr12 18048365 18048432 -126234057 + AT_rich Low_complexity Low_complexity 1 67 0 287 276 83 48 chr12 18048886 18049031 -126233458 + MIR SINE MIR 2 151 -111 288 339 0 8 chr12 18049160 18049278 -126233211 - L1M4 LINE L1 -3397 2749 2633 1867 221 60 13 chr12 18049306 18049773 -126232716 - L1MB5 LINE L1 0 6174 5686 3645 225 61 56 chr12 18049777 18050385 -126232104 + L1MA9 LINE L1 991 1595 -4953 1865 160 30 13 chr12 18050385 18050685 -126231804 - AluSx SINE Alu -7 305 1 3645 225 61 56 chr12 18050685 18053398 -126229091 + L1MA9 LINE L1 1595 6300 -248 3784 262 40 15 chr12 18053414 18054794 -126227695 + L1MB4 LINE L1 2482 3895 -2251 2921 177 26 63 chr12 18054777 18055915 -126226574 + L1MB4 LINE L1 4802 5918 -262 * 2097 138 32 6 chr12 18055915 18056262 -126226227 - THE1B LTR MaLR 0 364 9 1130 215 45 4 chr12 18056268 18056521 -126225968 + L1MB4 LINE L1 5910 6140 -40 736 245 59 81 chr12 18056528 18056864 -126225625 - L1MEc LINE L1 -3218 2997 2655 2412 62 0 3 chr12 18056864 18057171 -126225318 - AluY SINE Alu -5 306 1 736 245 59 81 chr12 18057171 18057438 -126225051 - L1MEc LINE L1 -3560 2655 2384 6697 81 3 0 chr12 18057438 18058577 -126223912 - L1PA8 LINE L1 0 6172 5024 736 245 59 81 chr12 18058577 18058591 -126223898 - L1MEc LINE L1 -3831 2384 2371 1152 196 61 61 chr12 18058591 18058887 -126223602 - AluJo SINE Alu -6 296 1 736 245 59 81 chr12 18058887 18059248 -126223241 - L1MEc LINE L1 -3844 2371 1911 2271 281 46 10 chr12 18059252 18060320 -126222169 - L1M4 LINE L1 -2179 3967 2862 9371 148 21 16 chr12 18061303 18062764 -126219725 + Tigger1 DNA MER2_type 1 1472 -946 1558 90 18 0 chr12 18062764 18063051 -126219438 + L1MA2 LINE L1 6077 6367 0 9371 148 21 16 chr12 18063051 18063173 -126219316 + Tigger1 DNA MER2_type 1472 1592 -826 703 198 0 0 chr12 18063174 18063295 -126219194 + FLAM_C SINE Alu 2 122 -21 706 108 0 0 chr12 18063296 18063398 -126219091 + Tigger1 DNA MER2_type 1580 1681 -737 3567 97 12 2 chr12 18063432 18063929 -126218560 - L1PA11 LINE L1 -8 6166 5665 1662 98 8 0 chr12 18063929 18064163 -126218326 + L1PA11 LINE L1 5418 5653 -521 4680 144 8 8 chr12 18064163 18064914 -126217575 + Tigger1 DNA MER2_type 1668 2418 0 189 0 0 0 chr12 18065244 18065265 -126217224 + (TAA)n Simple_repeat Simple_repeat 1 21 0 1890 43 0 0 chr12 18066736 18066969 -126215520 - L1PA2 LINE L1 0 6155 5923 251 310 53 97 chr12 18068504 18068629 -126213860 - L2 LINE L2 -72 3200 3088 1932 140 64 17 chr12 18068629 18068987 -126213502 - THE1C LTR MaLR 0 375 1 251 310 53 97 chr12 18068987 18069087 -126213402 - L2 LINE L2 -184 3088 2985 578 126 10 0 chr12 18069094 18069197 -126213292 + (TG)n Simple_repeat Simple_repeat 2 105 0 312 349 64 40 chr12 18069340 18069589 -126212900 - L2 LINE L2 -453 2861 2607 194 246 16 33 chr12 18069734 18069795 -126212694 + MIR SINE MIR 166 225 -37 393 109 0 0 chr12 18071622 18071686 -126210803 + (TG)n Simple_repeat Simple_repeat 1 64 0 1189 177 189 0 chr12 18072097 18072345 -126210144 + AluJb SINE Alu 1 295 -17 414 364 69 46 chr12 18072388 18073072 -126209417 + L2 LINE L2 2356 3058 -214 273 308 143 0 chr12 18073247 18073338 -126209151 - L2 LINE L2 0 3313 3210 1118 225 78 19 chr12 18073357 18073628 -126208861 + MER77 LTR ERV1 316 602 -3 709 355 66 13 chr12 18073720 18074038 -126208451 + L2 LINE L2 2641 2975 -339 2395 231 28 53 chr12 18074118 18074754 -126207735 - MER21-int LTR ERV1 -1555 2636 2017 356 348 144 5 chr12 18074830 18075017 -126207472 - L2 LINE L2 -204 3068 2856 814 90 18 0 chr12 18075802 18075913 -126206576 + L1PA13 LINE L1 5550 5662 -506 2779 108 24 0 chr12 18075915 18076332 -126206157 + L1PA13 LINE L1 5729 6155 -8 930 311 101 28 chr12 18076579 18077229 -126205260 - L2 LINE L2 0 3313 2625 994 171 0 0 chr12 18077234 18077404 -126205085 + MLT2C1 LTR ERVL 5 174 -223 327 265 10 20 chr12 18077404 18077506 -126204983 + (TA)n Simple_repeat Simple_repeat 2 102 0 253 116 93 0 chr12 18077512 18077555 -126204934 + MLT2C1 LTR ERVL 349 395 -2 630 267 78 0 chr12 18077556 18077736 -126204753 - L2 LINE L2 -685 2629 2436 300 304 70 25 chr12 18077880 18078038 -126204451 + MIR SINE MIR 84 248 -14 2349 179 15 73 chr12 18078242 18078440 -126204049 + MLT2B1 LTR ERVL 6 214 -306 1624 181 23 13 chr12 18078440 18078749 -126203740 + AluJo SINE Alu 1 312 0 2349 179 15 73 chr12 18078749 18079097 -126203392 + MLT2B1 LTR ERVL 214 520 0 459 0 0 0 chr12 18081061 18081112 -126201377 + (TG)n Simple_repeat Simple_repeat 2 52 0 573 251 59 105 chr12 18081533 18081684 -126200805 + L1MEd LINE L1 569 725 -5585 1902 89 104 0 chr12 18081684 18081954 -126200535 + AluSx SINE Alu 1 298 -14 573 251 59 105 chr12 18081954 18082072 -126200417 + L1MEd LINE L1 725 847 -5463 2147 113 0 10 chr12 18082072 18082373 -126200116 + AluSx SINE Alu 1 298 -14 573 251 59 105 chr12 18082373 18083018 -126199471 + L1MEd LINE L1 847 1497 -4813 333 314 133 9 chr12 18083113 18083323 -126199166 + L1MEd LINE L1 2119 2354 -3775 364 220 17 34 chr12 18083528 18083705 -126198784 + (TA)n Simple_repeat Simple_repeat 1 174 0 1310 277 99 39 chr12 18083705 18084765 -126197724 + L1MEd LINE L1 2638 3761 -2368 621 266 47 70 chr12 18084808 18085109 -126197380 - MER21B LTR ERV1 -149 714 421 413 219 26 73 chr12 18085118 18085269 -126197220 + L1MEd LINE L1 3805 3948 -2181 255 266 184 13 chr12 18085786 18085907 -126196582 - MIR SINE MIR -58 150 19 4198 195 41 21 chr12 18086609 18087445 -126195044 - MER21B LTR ERV1 -9 854 3 198 253 121 12 chr12 18088340 18088423 -126194066 + MIR SINE MIR 166 257 -5 27 62 0 0 chr12 18089694 18089742 -126192747 + AT_rich Low_complexity Low_complexity 1 48 0 224 229 12 48 chr12 18090023 18090106 -126192383 + GA-rich Low_complexity Low_complexity 1 80 0 184 158 0 79 chr12 18090789 18090827 -126191662 - L2 LINE L2 -37 3235 3201 399 21 0 0 chr12 18090863 18090911 -126191578 + (CA)n Simple_repeat Simple_repeat 2 49 0 302 335 145 47 chr12 18091260 18092024 -126190465 - L2 LINE L2 -649 2665 1827 318 283 94 31 chr12 18092419 18092578 -126189911 + MIR SINE MIR 17 185 -77 285 75 0 0 chr12 18094210 18094250 -126188239 + (CA)n Simple_repeat Simple_repeat 2 41 0 2178 104 3 3 chr12 18094915 18095213 -126187276 - AluSg SINE Alu -12 298 1 1356 265 49 15 chr12 18095436 18095847 -126186642 + MER110 LTR ERV1 46 470 -21 650 289 33 0 chr12 18096150 18096330 -126186159 + MIR SINE MIR 71 256 -6 396 0 0 0 chr12 18096921 18096965 -126185524 + (CA)n Simple_repeat Simple_repeat 2 45 0 446 49 16 0 chr12 18098664 18098725 -126183764 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 446 322 74 37 chr12 18100074 18100481 -126182008 - L1MC4a LINE L1 -1843 5965 5544 226 324 181 19 chr12 18100650 18100755 -126181734 - L2 LINE L2 -9 3263 3142 1221 240 128 13 chr12 18100888 18101350 -126181139 - HAL1 LINE L1 -688 1819 1305 2010 218 94 13 chr12 18101352 18101902 -126180587 + MER97b DNA MER1_type? 4 598 -455 222 229 61 8 chr12 18101915 18102046 -126180443 + (TA)n Simple_repeat Simple_repeat 1 138 0 243 88 0 0 chr12 18102060 18102094 -126180395 + (TG)n Simple_repeat Simple_repeat 2 35 0 203 182 55 0 chr12 18102236 18102291 -126180198 + (TA)n Simple_repeat Simple_repeat 2 59 0 270 340 42 46 chr12 18102327 18102633 -126179856 - HAL1 LINE L1 -1551 956 652 351 291 69 87 chr12 18102883 18103158 -126179331 - HAL1 LINE L1 -2233 274 5 21 36 0 0 chr12 18103381 18103409 -126179080 + AT_rich Low_complexity Low_complexity 1 28 0 579 244 77 6 chr12 18103738 18103906 -126178583 - MIR SINE MIR -16 246 67 1316 270 88 17 chr12 18103925 18104343 -126178146 - LTR50 LTR ERVL -7 788 341 2730 10 0 3 chr12 18105091 18105397 -126177092 + AluYa5 SINE Alu 1 305 -6 197 328 16 0 chr12 18105674 18105738 -126176751 + L2 LINE L2 3249 3313 0 355 299 0 41 chr12 18106851 18106948 -126175541 + L2 LINE L2 3221 3313 0 318 377 62 36 chr12 18106959 18107428 -126175061 - L2 LINE L2 -869 2445 1965 308 326 132 16 chr12 18107768 18108026 -126174463 - L2 LINE L2 -222 3091 2804 190 353 98 0 chr12 18109509 18109611 -126172878 + L2 LINE L2 2553 2664 -650 11620 63 3 0 chr12 18109897 18112163 -126170326 - L1PA6 LINE L1 -13 6141 3866 243 339 156 0 chr12 18112532 18112641 -126169848 + L2 LINE L2 3180 3305 -8 904 264 25 21 chr12 18114151 18114386 -126168103 + MIR SINE MIR 27 262 0 204 188 0 0 chr12 18115797 18115829 -126166660 + (CA)n Simple_repeat Simple_repeat 1 32 0 249 211 0 0 chr12 18116534 18116591 -126165898 + T-rich Low_complexity Low_complexity 1 57 0 36 0 0 0 chr12 18117092 18117128 -126165361 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr12 18118054 18118080 -126164409 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 18118237 18118258 -126164231 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 18119863 18119884 -126162605 + AT_rich Low_complexity Low_complexity 1 21 0 253 252 238 7 chr12 18121065 18121208 -126161281 - MER104 DNA Tc2 -4 176 1 237 159 0 0 chr12 18121336 18121380 -126161109 + (TA)n Simple_repeat Simple_repeat 1 44 0 281 307 11 0 chr12 18121491 18121579 -126160910 + (CATATA)n Simple_repeat Simple_repeat 3 91 0 22 56 0 0 chr12 18121655 18121691 -126160798 + AT_rich Low_complexity Low_complexity 1 36 0 239 368 75 45 chr12 18122895 18123254 -126159235 + L2 LINE L2 2257 2626 -688 2494 31 0 3 chr12 18123388 18123714 -126158775 - AluY SINE Alu 0 325 1 244 372 70 6 chr12 18123855 18124011 -126158478 + L2 LINE L2 2890 3055 -217 213 329 29 0 chr12 18124436 18124506 -126157983 - L2 LINE L2 -799 2515 2444 502 264 96 0 chr12 18124712 18124837 -126157652 - MER58A DNA MER1_type 0 140 4 235 299 105 90 chr12 18124838 18125316 -126157173 - L2 LINE L2 -1068 2246 1762 6252 152 25 20 chr12 18125332 18127597 -126154892 + L1MA5A LINE L1 4016 6292 -5 21 0 0 0 chr12 18128048 18128069 -126154420 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 18128219 18128256 -126154233 + AT_rich Low_complexity Low_complexity 1 37 0 890 238 38 33 chr12 18128692 18128932 -126153557 - MIR SINE MIR -10 252 12 24 32 0 0 chr12 18130790 18130821 -126151668 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 18130850 18130871 -126151618 + AT_rich Low_complexity Low_complexity 1 21 0 558 323 205 12 chr12 18131273 18131673 -126150816 + L3 LINE CR1 1094 1570 -7 445 295 34 0 chr12 18131799 18131948 -126150541 - MER103 DNA DNA -3 163 10 21 36 0 0 chr12 18132069 18132097 -126150392 + AT_rich Low_complexity Low_complexity 1 28 0 902 299 28 38 chr12 18132186 18132580 -126149909 - Tigger8 DNA MER2_type -167 499 110 195 162 27 0 chr12 18133860 18133897 -126148592 - L2 LINE L2 -1096 2218 2181 259 341 83 39 chr12 18133948 18134177 -126148312 + L2 LINE L2 2549 2787 -527 3593 170 60 18 chr12 18134230 18134943 -126147546 + Tigger2 DNA MER2_type 2 744 -1974 1555 135 12 4 chr12 18135008 18135260 -126147229 + Tigger2 DNA MER2_type 2463 2716 -2 276 265 0 29 chr12 18135642 18135710 -126146779 + L2 LINE L2 3247 3312 -1 32 26 0 0 chr12 18136066 18136105 -126146384 + AT_rich Low_complexity Low_complexity 1 39 0 853 209 26 68 chr12 18137092 18137326 -126145163 + MER58A DNA MER1_type 1 224 0 321 269 135 43 chr12 18137391 18137532 -126144957 + MIR SINE MIR 83 236 -26 230 0 33 0 chr12 18137846 18137876 -126144613 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 318 280 120 20 chr12 18138537 18138637 -126143852 + L2 LINE L2 3203 3312 -1 1880 200 31 45 chr12 18139152 18139597 -126142892 - L1MCa LINE L1 -5945 481 43 1907 134 0 33 chr12 18140576 18140881 -126141608 + AluSx SINE Alu 1 295 -17 5394 255 46 64 chr12 18140983 18142800 -126139689 + L1MB7 LINE L1 15 1908 -5230 1691 177 0 3 chr12 18142800 18143121 -126139368 + AluSx SINE Alu 1 320 0 5394 255 46 64 chr12 18143121 18143902 -126138587 + L1MB7 LINE L1 1908 2702 -4436 6280 246 68 44 chr12 18144183 18144576 -126137913 + L1MB7 LINE L1 2762 3144 -3813 686 112 0 0 chr12 18144576 18144683 -126137806 + L1MA1 LINE L1 6193 6299 -3 6280 246 68 44 chr12 18144683 18146871 -126135618 + L1MB7 LINE L1 3144 5376 -1581 941 154 11 0 chr12 18146871 18147046 -126135443 + L1MA4 LINE L1 6113 6289 -11 6280 246 68 44 chr12 18147046 18147356 -126135133 + L1MB7 LINE L1 5376 5677 -1280 10430 154 30 24 chr12 18147356 18150379 -126132110 - L1MA3 LINE L1 -8 7716 4670 2031 167 60 32 chr12 18150384 18150903 -126131586 - MLT2A2 LTR ERVL 0 554 1 20170 189 28 6 chr12 18150903 18155446 -126127043 - L1MA3 LINE L1 -2900 4665 17 4078 204 35 9 chr12 18155452 18155874 -126126615 + L1MB7 LINE L1 5659 6068 -927 339 85 0 0 chr12 18155874 18155921 -126126568 + (TG)n Simple_repeat Simple_repeat 2 48 0 4078 204 35 9 chr12 18155921 18156807 -126125682 + L1MB7 LINE L1 6068 6995 0 21 0 0 0 chr12 18156807 18156828 -126125661 + AT_rich Low_complexity Low_complexity 1 21 0 349 276 30 81 chr12 18156936 18157233 -126125256 + L1M4c LINE L1 1364 1839 -904 200 184 0 0 chr12 18157456 18157494 -126124995 + (TG)n Simple_repeat Simple_repeat 1 38 0 345 125 0 0 chr12 18157718 18157774 -126124715 + (TG)n Simple_repeat Simple_repeat 2 57 0 582 301 167 30 chr12 18157998 18158400 -126124089 + LTR16A1 LTR ERVL 1 457 0 731 343 48 26 chr12 18159402 18159819 -126122670 + HERV16 LTR ERVL 1092 1517 -3479 1120 337 59 31 chr12 18159867 18160786 -126121703 + HERV16 LTR ERVL 1719 2666 -2670 259 191 29 15 chr12 18160945 18161013 -126121476 + (CA)n Simple_repeat Simple_repeat 2 70 0 24 53 0 0 chr12 18161020 18161058 -126121431 + AT_rich Low_complexity Low_complexity 1 38 0 1739 171 11 57 chr12 18161670 18162020 -126120469 - MER1B DNA MER1_type -1 336 3 802 130 135 5 chr12 18162364 18162556 -126119933 - L1 LINE L1 -1601 4545 4329 * 1515 201 25 6 chr12 18162553 18162871 -126119618 + L1 LINE L1 4536 4859 -1287 * 2185 260 25 58 chr12 18162867 18164774 -126117715 - L1M2 LINE L1 -4059 2789 1222 1975 177 11 64 chr12 18166270 18166706 -126115783 - MLT2D LTR ERVL 0 414 2 214 423 66 0 chr12 18167776 18167913 -126114576 + MIR3 SINE MIR 9 154 -54 1935 159 0 0 chr12 18168406 18168702 -126113787 - AluSx SINE Alu -16 296 1 209 269 0 0 chr12 18168765 18168817 -126113672 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 778 244 100 35 chr12 18168974 18169293 -126113196 - L1ME1 LINE L1 -1 6165 5826 664 253 32 61 chr12 18169296 18169672 -126112817 - L1ME1 LINE L1 -1462 4684 4320 * 3152 191 27 45 chr12 18169652 18170400 -126112089 - L1MA10 LINE L1 -14 6320 5587 10352 220 38 72 chr12 18170403 18171601 -126110888 - L1P5 LINE L1 -473 6386 5149 186 43 0 0 chr12 18171601 18171624 -126110865 + (TTG)n Simple_repeat Simple_repeat 2 24 0 10352 220 38 72 chr12 18171624 18172434 -126110055 - L1P5 LINE L1 -1710 5149 4313 2138 103 23 7 chr12 18172434 18172735 -126109754 - AluSc SINE Alu 0 309 4 10352 220 38 72 chr12 18172735 18173339 -126109150 - L1P5 LINE L1 -2546 4313 3690 1804 172 0 23 chr12 18173339 18173642 -126108847 - AluJb SINE Alu -16 296 1 10352 220 38 72 chr12 18173642 18174694 -126107795 - L1P5 LINE L1 -3169 3690 2604 1615 112 0 0 chr12 18174694 18174940 -126107549 - AluSg/x SINE Alu 0 314 69 10352 220 38 72 chr12 18174940 18176384 -126106105 - L1P5 LINE L1 -4255 2604 1346 293 279 0 0 chr12 18176389 18176468 -126106021 - L1P5 LINE L1 -5299 1550 1472 329 399 29 78 chr12 18176486 18176767 -126105722 - L1M2 LINE L1 -5736 1113 847 332 316 58 19 chr12 18177172 18177327 -126105162 - L1P5 LINE L1 -5244 1595 1435 703 367 28 40 chr12 18177520 18177860 -126104629 - L1P5 LINE L1 -6320 519 185 1026 31 8 0 chr12 18177860 18177990 -126104499 - L1PA5 LINE L1 0 6154 6024 703 367 28 40 chr12 18177990 18178120 -126104369 - L1P5 LINE L1 -6654 185 55 260 186 0 0 chr12 18178140 18178183 -126104306 + tRNA-Met-e tRNA tRNA 1 43 -32 1649 258 96 70 chr12 18178185 18179299 -126103190 - L1M4 LINE L1 -1942 4204 3033 2246 106 0 7 chr12 18179299 18179600 -126102889 - AluSg1 SINE Alu -10 299 1 1649 258 96 70 chr12 18179600 18180103 -126102386 - L1M4 LINE L1 -3113 3033 2545 584 159 148 39 chr12 18180121 18180303 -126102186 - L1MA9 LINE L1 -7 6305 6104 487 290 76 20 chr12 18180316 18180619 -126101870 - L1MEc LINE L1 -5579 817 498 213 39 0 0 chr12 18180719 18180745 -126101744 + (TC)n Simple_repeat Simple_repeat 1 26 0 509 313 70 9 chr12 18180828 18181058 -126101431 - L1MEc LINE L1 -6117 279 36 366 190 13 0 chr12 18182546 18182625 -126099864 + L1MA4A LINE L1 6201 6280 -23 373 297 22 0 chr12 18182713 18182804 -126099685 - L2 LINE L2 -2 3270 3178 330 26 0 0 chr12 18185751 18185790 -126096699 + (CA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr12 18186239 18186264 -126096225 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 18187229 18187251 -126095238 + AT_rich Low_complexity Low_complexity 1 22 0 404 309 7 37 chr12 18188939 18189075 -126093414 - L2 LINE L2 0 3313 3182 2004 112 26 3 chr12 18189085 18189388 -126093101 + AluSg SINE Alu 1 310 0 208 372 54 20 chr12 18189797 18189945 -126092544 - L2 LINE L2 -908 2406 2254 414 268 0 0 chr12 18189945 18190057 -126092432 + L1MC1 LINE L1 4272 4383 -1763 * 5409 193 13 16 chr12 18190050 18190571 -126091918 + L1MC1 LINE L1 4602 5123 -1210 1352 101 64 14 chr12 18190571 18190789 -126091700 - MER30 DNA MER1_type -1 229 1 5409 193 13 16 chr12 18190789 18191916 -126090573 + L1MC1 LINE L1 5123 6239 -94 275 291 233 35 chr12 18191916 18192229 -126090260 - L2 LINE L2 -1077 2237 1863 196 151 19 19 chr12 18193430 18193483 -126089006 + CT-rich Low_complexity Low_complexity 4 56 0 2099 134 10 0 chr12 18193484 18193790 -126088699 - AluSg SINE Alu -1 309 1 358 319 21 7 chr12 18193790 18193934 -126088555 + CT-rich Low_complexity Low_complexity 2 147 0 1236 198 30 106 chr12 18193980 18194385 -126088104 + MLT1A2 LTR MaLR 1 374 0 242 266 44 80 chr12 18195820 18195933 -126086556 - L2 LINE L2 0 3313 3205 370 304 74 89 chr12 18195964 18196290 -126086199 + MLT1K LTR MaLR 262 582 -6 25 0 0 0 chr12 18196392 18196417 -126086072 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 18198623 18198644 -126083845 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr12 18199124 18199156 -126083333 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 18199257 18199287 -126083202 + AT_rich Low_complexity Low_complexity 1 30 0 941 188 74 10 chr12 18199445 18199647 -126082842 - MER20 DNA MER1_type -4 215 1 6841 158 21 11 chr12 18199729 18200990 -126081499 - L1P LINE L1 -831 5315 4055 5501 93 15 48 chr12 18200989 18201850 -126080639 + L1PA12 LINE L1 5336 6168 0 * 1639 212 33 12 chr12 18202464 18202799 -126079690 + MER2 DNA MER2_type 1 342 -3 1967 139 17 0 chr12 18202849 18203144 -126079345 - AluSx SINE Alu -12 300 1 944 109 14 12 chr12 18203337 18204341 -126078148 + HSATII Satellite Satellite 1 1005 -44 607 137 7 7 chr12 18204357 18204496 -126077993 + HSATII Satellite Satellite 19 157 -13 2319 94 3 0 chr12 18204779 18205087 -126077402 + AluY SINE Alu 1 309 -2 2463 263 75 54 chr12 18205378 18207054 -126075435 + L1M4 LINE L1 2804 4514 -1632 1391 288 31 27 chr12 18207054 18207122 -126075367 + HERVL40 LTR ERVL 3774 3840 -1690 2324 70 10 0 chr12 18207122 18207422 -126075067 - AluY SINE Alu -8 303 1 1391 288 31 27 chr12 18207422 18207836 -126074653 + HERVL40 LTR ERVL 3840 4258 -1272 1651 148 39 36 chr12 18207864 18208195 -126074294 + THE1C LTR MaLR 21 352 -23 5724 216 34 24 chr12 18208322 18211156 -126071333 - L1 LINE L1 -2711 4497 1614 1919 266 31 62 chr12 18211189 18211831 -126070658 - L1 LINE L1 -6567 642 21 628 173 70 0 chr12 18211861 18212008 -126070481 + LTR40b LTR ERVL 327 462 0 1595 270 77 24 chr12 18212008 18212339 -126070150 - L1MDa LINE L1 -2026 4189 3877 2132 88 3 50 chr12 18212339 18212656 -126069833 - AluSp SINE Alu -9 304 3 1595 270 77 24 chr12 18212656 18214578 -126067911 - L1MDa LINE L1 -2338 3877 1306 303 284 13 19 chr12 18214720 18214875 -126067614 - L1MDa LINE L1 -5230 1166 1013 986 179 19 24 chr12 18214984 18215191 -126067298 - L1M3 LINE L1 -626 5793 5588 291 30 0 0 chr12 18215191 18215224 -126067265 + U6 snRNA snRNA 1 33 -74 8344 234 78 37 chr12 18215224 18217600 -126064889 - L1M3 LINE L1 -782 5600 3322 1517 188 33 0 chr12 18217600 18217872 -126064617 + AluSx SINE Alu 1 281 -31 8344 234 78 37 chr12 18217872 18217890 -126064599 - L1M3 LINE L1 -3060 3322 3306 186 43 0 0 chr12 18217890 18217913 -126064576 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8344 234 78 37 chr12 18217913 18220593 -126061896 - L1M3 LINE L1 -3076 3306 306 252 214 0 0 chr12 18220695 18220751 -126061738 + (TA)n Simple_repeat Simple_repeat 1 56 0 183 80 0 0 chr12 18220752 18220777 -126061712 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 931 252 50 27 chr12 18220779 18221116 -126061373 - MLT2D LTR ERVL -69 345 1 1157 235 50 4 chr12 18221116 18221397 -126061092 - L1M3 LINE L1 -6075 309 16 2433 137 3 3 chr12 18221434 18221798 -126060691 + THE1B LTR MaLR 1 364 0 709 23 0 0 chr12 18221870 18221958 -126060531 + L1PA3 LINE L1 6068 6155 0 982 251 50 56 chr12 18222495 18222873 -126059616 + MLT1B LTR MaLR 13 388 -2 276 344 45 25 chr12 18223969 18224126 -126058363 + MIR SINE MIR 101 260 -2 32 43 0 0 chr12 18224626 18224672 -126057817 + AT_rich Low_complexity Low_complexity 1 46 0 196 151 19 19 chr12 18224711 18224764 -126057725 + GA-rich Low_complexity Low_complexity 4 56 0 482 330 59 17 chr12 18226159 18226395 -126056094 - L2 LINE L2 -212 3101 2856 468 299 164 5 chr12 18226416 18226630 -126055859 - LTR16A1 LTR ERVL -30 427 180 320 372 28 7 chr12 18226804 18226949 -126055540 - L2 LINE L2 -602 2712 2565 2362 75 0 10 chr12 18227566 18227873 -126054616 + AluY SINE Alu 1 304 -7 378 0 0 0 chr12 18230215 18230257 -126052232 + (TG)n Simple_repeat Simple_repeat 1 42 0 2210 109 10 0 chr12 18230291 18230585 -126051904 - AluSx SINE Alu -15 297 1 440 126 11 0 chr12 18230746 18230833 -126051656 + (TC)n Simple_repeat Simple_repeat 1 88 0 1034 99 19 0 chr12 18232472 18232634 -126049855 + L1PA12 LINE L1 5883 6047 -121 258 386 79 7 chr12 18232757 18232897 -126049592 + L2 LINE L2 3121 3270 -2 28 0 0 0 chr12 18232940 18232968 -126049521 + AT_rich Low_complexity Low_complexity 1 28 0 226 256 237 38 chr12 18233726 18233937 -126048552 - LTR16C LTR ERVL -79 412 160 354 23 0 0 chr12 18235273 18235316 -126047173 + (TG)n Simple_repeat Simple_repeat 1 43 0 2238 242 107 9 chr12 18235328 18236120 -126046369 - MER63C DNA MER1_type -14 916 47 40 21 0 0 chr12 18236179 18236226 -126046263 + AT_rich Low_complexity Low_complexity 1 47 0 41992 42 1 2 chr12 18236330 18242519 -126039970 + L1PA3 LINE L1 9 6190 0 3233 149 76 18 chr12 18243362 18243979 -126038510 - MER39B LTR ERV1 0 653 1 327 364 115 16 chr12 18244495 18244869 -126037620 - L1ME LINE L1 -463 5699 5289 3939 146 46 60 chr12 18245451 18246462 -126036027 + pTR5 LTR ERV1 741 2029 -409 241 277 11 0 chr12 18246462 18246556 -126035933 + LTR30 LTR ERV1 548 642 -80 1456 90 0 9 chr12 18246559 18246782 -126035707 + pTR5 LTR ERV1 172 392 -2046 584 291 45 39 chr12 18246787 18247120 -126035369 - L1ME LINE L1 -1440 4706 4372 392 316 91 19 chr12 18247298 18247507 -126034982 - L1ME LINE L1 -1817 4329 4106 1486 167 51 4 chr12 18248297 18248572 -126033917 + Ricksha_b DNA DNA 1 288 -966 2903 140 32 13 chr12 18248591 18248956 -126033533 - L1PB3 LINE L1 0 6154 5774 408 82 0 0 chr12 18248956 18249017 -126033472 + (TG)n Simple_repeat Simple_repeat 2 62 0 2903 140 32 13 chr12 18249017 18249180 -126033309 - L1PB3 LINE L1 -380 5774 5616 2945 128 66 53 chr12 18249180 18249742 -126032747 + LTR12 LTR ERV1 13 581 -133 5540 197 51 27 chr12 18249742 18251446 -126031043 - L1PBb LINE L1 -2315 3888 2227 428 123 0 0 chr12 18251446 18251519 -126030970 - MER41B LTR ERV1 -81 554 482 5540 197 51 27 chr12 18251519 18253515 -126028974 - L1PBb LINE L1 -3976 2227 18 3206 286 39 43 chr12 18253514 18255125 -126027364 - L1PBa LINE L1 -5256 1607 3 * 5278 159 21 12 chr12 18255148 18255945 -126026544 + Ricksha_b DNA DNA 274 1082 -1772 2463 62 0 7 chr12 18255945 18256251 -126026238 - AluY SINE Alu -7 304 1 5278 159 21 12 chr12 18256251 18256419 -126026070 + Ricksha_b DNA DNA 1082 1247 -7 230 222 56 0 chr12 18256638 18256692 -126025797 - ORSL DNA AcHobo -218 57 1 800 271 28 0 chr12 18256899 18257117 -126025372 + MER58A DNA MER1_type 1 224 0 301 336 168 0 chr12 18258004 18258153 -126024336 + MIR3 SINE MIR 28 201 -7 272 175 16 0 chr12 18258315 18258378 -126024111 + CT-rich Low_complexity Low_complexity 2 65 0 1367 163 117 72 chr12 18259903 18260332 -126022157 - LTR7 LTR ERV1 -2 448 1 2429 69 45 13 chr12 18260332 18260710 -126021779 - HERVH LTR ERV1 0 7713 7324 1039 148 84 5 chr12 18260710 18260912 -126021577 - HERVH LTR ERV1 -1894 5819 5602 4081 148 0 1 chr12 18260919 18261581 -126020908 - HERVH LTR ERV1 -2564 5149 4489 3179 116 4 8 chr12 18261576 18262087 -126020402 - HERVH LTR ERV1 -3713 4000 3492 * 854 128 20 0 chr12 18262077 18262225 -126020264 - HERVH LTR ERV1 -4423 3290 3140 * 2410 110 0 10 chr12 18262219 18262602 -126019887 - HERVH LTR ERV1 -4726 2987 2609 * 15437 83 49 8 chr12 18262595 18264942 -126017547 - HERVH LTR ERV1 -5269 2444 1 1451 135 123 79 chr12 18264944 18265373 -126017116 - LTR7 LTR ERV1 -2 448 1 1691 165 43 4 chr12 18265498 18265777 -126016712 - AluJb SINE Alu -22 290 1 1706 207 114 79 chr12 18265918 18266682 -126015807 + LTR1B LTR ERV1 1 983 -37 471 316 48 19 chr12 18267065 18267297 -126015192 + MIR SINE MIR 22 260 -2 217 256 103 86 chr12 18267331 18267448 -126015041 + L2 LINE L2 3154 3272 0 274 365 66 17 chr12 18267594 18267775 -126014714 + MIR3 SINE MIR 16 205 -3 22 35 0 0 chr12 18269157 18269186 -126013303 + AT_rich Low_complexity Low_complexity 1 29 0 1517 261 53 34 chr12 18269827 18270333 -126012156 - LTR40a LTR ERVL -1 518 3 193 362 63 39 chr12 18270875 18271002 -126011487 + MIR3 SINE MIR 3 132 -76 23 0 0 0 chr12 18271642 18271665 -126010824 + AT_rich Low_complexity Low_complexity 1 23 0 246 62 0 0 chr12 18271665 18271697 -126010792 + (TA)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr12 18271709 18271733 -126010756 + AT_rich Low_complexity Low_complexity 1 24 0 261 339 91 0 chr12 18272514 18272635 -126009854 - MIR SINE MIR -78 184 53 304 309 0 21 chr12 18272736 18272830 -126009659 - MIR SINE MIR -12 250 159 423 278 191 6 chr12 18272854 18273027 -126009462 + MIR SINE MIR 32 236 -26 198 311 14 27 chr12 18273780 18273854 -126008635 - MIR SINE MIR -182 80 8 2444 55 0 0 chr12 18273893 18274183 -126008306 - AluY SINE Alu -21 290 1 955 324 98 8 chr12 18274855 18275232 -126007257 + LTR16B LTR ERVL 1 411 -53 262 319 22 43 chr12 18275330 18275562 -126006927 + MLT1H LTR MaLR 54 280 -269 243 246 3 0 chr12 18275683 18275750 -126006739 + MLT1H LTR MaLR 475 549 0 699 217 0 92 chr12 18276492 18276732 -126005757 - MER20 DNA MER1_type 0 219 2 1497 225 74 0 chr12 18276793 18277131 -126005358 + MLT1A1 LTR MaLR 1 363 -2 28 0 0 0 chr12 18278326 18278354 -126004135 + AT_rich Low_complexity Low_complexity 1 28 0 3288 114 28 2 chr12 18278467 18278965 -126003524 - MER75 DNA T2_type -3 511 1 316 347 34 0 chr12 18278967 18279114 -126003375 + L1M3c LINE L1 1228 1379 -4762 385 224 0 0 chr12 18279137 18279213 -126003276 + MLT1A1 LTR MaLR 1 76 -320 1774 174 30 75 chr12 18279214 18279651 -126002838 + MSTB1 LTR MaLR 1 417 -15 848 187 43 135 chr12 18279666 18279992 -126002497 + MLT1A1 LTR MaLR 70 365 0 242 348 30 6 chr12 18280401 18280565 -126001924 + L1MEc LINE L1 1624 1791 -4605 319 291 0 80 chr12 18280790 18280941 -126001548 + L1MEc LINE L1 2158 2296 -4100 249 289 50 75 chr12 18280977 18281379 -126001110 + L1MEc LINE L1 2293 2684 -3531 492 251 242 6 chr12 18281427 18281762 -126000727 + L1MEc LINE L1 2805 3218 -2997 316 312 74 50 chr12 18281790 18282287 -126000202 + L1MEc LINE L1 3309 3817 -2398 717 259 7 0 chr12 18282309 18282452 -126000037 - MER82 DNA MER2_type -20 633 490 1743 131 115 35 chr12 18282482 18282796 -125999693 - MER1B DNA MER1_type 0 339 1 * 1769 231 39 18 chr12 18282796 18283231 -125999258 - MER82 DNA MER2_type -209 444 1 488 249 92 29 chr12 18284103 18284276 -125998213 - MLT1J1 LTR MaLR -246 200 17 2249 88 3 19 chr12 18285091 18285398 -125997091 - AluY SINE Alu -9 302 1 274 274 91 89 chr12 18286439 18286855 -125995634 + MLT1J LTR MaLR 1 417 -94 19693 52 27 2 chr12 18286934 18290217 -125992272 + L1PA5 LINE L1 2838 6154 0 26 0 0 0 chr12 18290217 18290243 -125992246 + AT_rich Low_complexity Low_complexity 1 26 0 799 250 60 116 chr12 18290729 18291109 -125991380 - L2 LINE L2 -762 2552 2194 470 305 102 80 chr12 18291570 18291732 -125990757 - L1MEd LINE L1 -5286 833 676 2069 99 0 14 chr12 18291732 18292026 -125990463 - AluSg SINE Alu -18 292 3 470 305 102 80 chr12 18292026 18292325 -125990164 - L1MEd LINE L1 -5443 676 362 2082 164 11 6 chr12 18293239 18293599 -125988890 - MLT1A1 LTR MaLR 0 365 4 216 308 15 0 chr12 18295424 18295489 -125987000 + MIR SINE MIR 4 69 -193 1982 176 12 0 chr12 18297204 18297534 -125984955 + MER7A DNA MER2_type 2 333 -13 355 259 0 12 chr12 18298139 18298220 -125984269 - L2 LINE L2 -4 3309 3230 580 306 24 60 chr12 18299821 18300190 -125982299 + MARNA DNA Mariner 24 379 -207 203 59 0 29 chr12 18300279 18300313 -125982176 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 604 255 20 7 chr12 18300314 18300463 -125982026 - FAM SINE Alu -34 151 1 399 289 44 63 chr12 18300764 18300923 -125981566 - MIR3 SINE MIR -14 194 39 913 151 0 6 chr12 18301365 18301640 -125980849 - AluSc SINE Alu 0 425 152 828 93 8 0 chr12 18301644 18301762 -125980727 + AluSq/x SINE Alu 15 133 -179 1641 247 3 6 chr12 18301816 18302180 -125980309 - MLT1A1 LTR MaLR 0 365 3 1196 350 45 38 chr12 18302787 18303441 -125979048 - L2 LINE L2 -308 3005 2341 1980 209 35 0 chr12 18303441 18303843 -125978646 - MER47B DNA MER2_type -1 417 2 1196 350 45 38 chr12 18303843 18303943 -125978546 - L2 LINE L2 -972 2341 2243 357 332 104 26 chr12 18304041 18304348 -125978141 - L2 LINE L2 -1343 1971 1641 420 188 10 62 chr12 18304746 18304824 -125977665 - 5S rRNA rRNA -30 91 17 1959 152 52 17 chr12 18304824 18305186 -125977303 + THE1C LTR MaLR 1 375 0 420 188 10 62 chr12 18305186 18305203 -125977286 - 5S rRNA rRNA -104 17 1 187 254 0 51 chr12 18305383 18305442 -125977047 - MIR SINE MIR -103 159 104 25 0 0 0 chr12 18305674 18305699 -125976790 + AT_rich Low_complexity Low_complexity 1 25 0 256 300 20 87 chr12 18305897 18306047 -125976442 + L3 LINE CR1 123 262 -1315 338 322 154 7 chr12 18306957 18307106 -125975383 + MER5A DNA MER1_type 1 171 -18 1466 245 94 6 chr12 18307106 18307575 -125974914 - L1ME3A LINE L1 -17 6153 5644 844 245 53 39 chr12 18307581 18307961 -125974528 - MER67C LTR ERV1 -8 506 145 3379 188 59 9 chr12 18307973 18308714 -125973775 + L1 LINE L1 4461 5238 -908 787 176 35 0 chr12 18308715 18308857 -125973632 - MER67D LTR ERV1 -367 147 1 452 215 209 34 chr12 18308865 18309042 -125973447 - L1ME3A LINE L1 -528 5642 5435 332 299 76 21 chr12 18309049 18309340 -125973149 - L1ME3A LINE L1 -2170 3976 3670 454 242 0 0 chr12 18309377 18309468 -125973021 - U6 snRNA snRNA -16 91 1 204 135 0 0 chr12 18309535 18309572 -125972917 + (TCC)n Simple_repeat Simple_repeat 2 38 0 333 330 66 63 chr12 18310258 18310715 -125971774 - L2 LINE L2 -1292 2022 1565 359 290 22 65 chr12 18311742 18311880 -125970609 + MLT1J LTR MaLR 149 280 -231 1470 136 16 4 chr12 18312206 18312464 -125970025 + L1MA4 LINE L1 6034 6294 -6 776 138 109 14 chr12 18312597 18312735 -125969754 - FRAM SINE Alu -26 150 1 378 61 0 0 chr12 18313397 18313446 -125969043 + (A)n Simple_repeat Simple_repeat 1 49 0 200 290 75 32 chr12 18314648 18314741 -125967748 - MIR SINE MIR -92 170 74 303 268 107 42 chr12 18315455 18315623 -125966866 - L1MC/D LINE L1 -2256 5552 5374 207 167 0 0 chr12 18316078 18316114 -125966375 + (TG)n Simple_repeat Simple_repeat 1 36 0 207 206 48 0 chr12 18316320 18316383 -125966106 + T-rich Low_complexity Low_complexity 2 67 0 2472 160 29 35 chr12 18316596 18316967 -125965522 - L1MA8 LINE L1 -4 6287 5918 2031 163 9 0 chr12 18316967 18317311 -125965178 - MER7A DNA MER2_type 0 346 2 2472 160 29 35 chr12 18317311 18317458 -125965031 - L1MA8 LINE L1 -373 5918 5772 1313 261 50 2 chr12 18317458 18317940 -125964549 - L1M3c LINE L1 -4548 2550 2046 1062 200 9 14 chr12 18317947 18318167 -125964322 - AluJo SINE Alu -7 305 87 738 343 31 22 chr12 18318167 18318584 -125963905 - L1M3c LINE L1 -5156 2012 1592 2437 177 69 88 chr12 18318606 18319347 -125963142 - LTR8A LTR ERV1 0 727 1 2363 139 125 32 chr12 18319988 18320064 -125962425 - LTR10A LTR ERV1 0 547 479 2380 73 7 0 chr12 18320064 18320367 -125962122 - AluSp SINE Alu -7 306 2 2363 139 125 32 chr12 18320367 18320801 -125961688 - LTR10A LTR ERV1 -68 479 2 274 137 20 20 chr12 18320824 18320875 -125961614 - LTR10B LTR ERV1 -496 51 1 604 284 49 18 chr12 18321096 18321381 -125961108 - L1MCc LINE L1 -1524 5417 5124 509 155 39 19 chr12 18321381 18321531 -125960958 - AluJb SINE Alu 0 329 178 359 200 14 0 chr12 18321648 18321718 -125960771 + MLT2B3 LTR ERVL 1 71 -483 1847 210 89 59 chr12 18321809 18322281 -125960208 + MLT2B3 LTR ERVL 69 554 0 809 293 17 0 chr12 18322321 18322560 -125959929 + L1M4 LINE L1 3896 4138 -2008 355 245 9 19 chr12 18322581 18322687 -125959802 - L1MCc LINE L1 -2667 4274 4170 * 399 268 16 22 chr12 18322684 18322867 -125959622 + L1M4 LINE L1 4143 4324 -1822 679 289 30 4 chr12 18322884 18323154 -125959335 - L1M4 LINE L1 -1538 5403 5127 354 23 0 0 chr12 18323159 18323202 -125959287 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1580 187 7 4 chr12 18323202 18323475 -125959014 - AluJb SINE Alu -28 284 11 928 266 94 52 chr12 18323475 18324733 -125957756 - L1MCc LINE L1 -3058 3883 2608 342 255 88 42 chr12 18324859 18325051 -125957438 - L1MCc LINE L1 -4670 2271 2071 1644 313 98 48 chr12 18325139 18326921 -125955568 - L1MCc LINE L1 -4887 1536 19 1534 255 104 18 chr12 18327693 18328136 -125954353 - MLT1E1 LTR MaLR 0 654 174 331 338 48 61 chr12 18328524 18328736 -125953753 - L2 LINE L2 -285 3028 2815 3039 153 17 57 chr12 18328736 18329313 -125953176 - MLT2B3 LTR ERVL 0 554 1 331 338 48 61 chr12 18329313 18329561 -125952928 - L2 LINE L2 -498 2815 2575 26 0 0 0 chr12 18329670 18329696 -125952793 + AT_rich Low_complexity Low_complexity 1 26 0 411 322 155 47 chr12 18330886 18331330 -125951159 + LTR33 LTR ERVL 2 493 -28 404 350 120 43 chr12 18332262 18332636 -125949853 + L2 LINE L2 2898 3300 -13 680 203 75 43 chr12 18332731 18332918 -125949571 - MLT2D LTR ERVL 0 414 222 1836 163 38 27 chr12 18383113 18383482 -125899007 + THE1C LTR MaLR 1 373 -2 428 261 87 81 chr12 18383712 18384142 -125898347 + MLT1E3 LTR MaLR 1 415 -211 4033 186 32 66 chr12 18384288 18385512 -125896977 - L1P5 LINE L1 -592 5559 4398 234 0 0 0 chr12 18385512 18385538 -125896951 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 4033 186 32 66 chr12 18385538 18385791 -125896698 - L1P5 LINE L1 -1753 4398 4138 26 0 0 0 chr12 18385842 18385868 -125896621 + AT_rich Low_complexity Low_complexity 1 26 0 2631 128 68 0 chr12 18386067 18386481 -125896008 + THE1B-int LTR MaLR 1133 1574 -6 2074 167 28 0 chr12 18386486 18386840 -125895649 + THE1B LTR MaLR 1 364 0 8862 144 46 45 chr12 18386847 18389596 -125892893 - L1PBa LINE L1 -2848 4014 1116 1953 145 13 0 chr12 18389604 18389915 -125892574 - L1PBa LINE L1 -5814 1049 735 3710 25 2 0 chr12 18390016 18390458 -125892031 + L1PA2 LINE L1 5712 6154 -1 675 274 62 59 chr12 18391445 18391784 -125890705 + MLT1K LTR MaLR 227 566 -22 337 333 0 10 chr12 18392182 18392278 -125890211 - MIR SINE MIR -150 112 18 2265 243 26 87 chr12 18392802 18393581 -125888908 - MLT-int LTR MaLR -598 1137 407 788 243 23 0 chr12 18393581 18393758 -125888731 + L1MA5 LINE L1 5613 5793 -504 2344 179 18 16 chr12 18393803 18394295 -125888194 + L1MA5 LINE L1 5784 6276 -24 369 0 0 0 chr12 18394324 18394365 -125888124 + (TG)n Simple_repeat Simple_repeat 2 42 0 300 231 13 26 chr12 18394366 18394444 -125888045 - MLT-int LTR MaLR -1319 416 340 9653 151 6 21 chr12 18394546 18396133 -125886356 + Harlequin LTR ERV1 3335 4896 -2917 * 12775 191 12 7 chr12 18396129 18398416 -125884073 + Harlequin LTR ERV1 5469 7766 -47 526 211 10 0 chr12 18398410 18398514 -125883975 + Harlequin LTR ERV1 6747 6851 -45 * 23022 26 10 0 chr12 18398615 18401662 -125880827 + L1P1 LINE L1 2585 5661 -494 10429 172 34 18 chr12 18401765 18403712 -125878777 - HERVE LTR ERV1 -5834 1979 1 1487 245 46 23 chr12 18403712 18404148 -125878341 - LTR2 LTR ERV1 0 449 4 5068 209 28 3 chr12 18404150 18405452 -125877037 + L1PB1 LINE L1 4095 5428 -738 2328 111 28 3 chr12 18405553 18405946 -125876543 + L1PB1 LINE L1 5773 6174 0 291 357 60 30 chr12 18407016 18407285 -125875204 - L2 LINE L2 -445 2869 2593 2601 36 3 0 chr12 18407332 18407637 -125874852 + AluYb8 SINE Alu 1 306 -12 205 304 80 54 chr12 18407866 18407978 -125874511 + MIR SINE MIR 112 226 -36 21 36 0 0 chr12 18409590 18409618 -125872871 + AT_rich Low_complexity Low_complexity 1 28 0 316 236 0 73 chr12 18409823 18409853 -125872636 + L1MC4 LINE L1 6602 6633 -1409 2310 74 0 3 chr12 18409853 18410138 -125872351 + AluY SINE Alu 13 296 -15 316 236 0 73 chr12 18410138 18410217 -125872272 + L1MC4 LINE L1 6633 6703 -1339 1443 278 29 22 chr12 18410885 18411335 -125871154 + LTR16B LTR ERVL 1 453 -11 307 301 114 34 chr12 18411456 18411632 -125870857 - L2 LINE L2 0 3313 3124 1052 336 91 26 chr12 18411648 18412298 -125870191 - L2 LINE L2 -311 3002 2308 21 57 0 0 chr12 18415649 18415684 -125866805 + AT_rich Low_complexity Low_complexity 1 35 0 524 309 70 31 chr12 18415902 18415996 -125866493 + L1MEc LINE L1 1081 1170 -5226 2068 139 3 0 chr12 18415996 18416297 -125866192 + AluSg SINE Alu 1 302 -8 524 309 70 31 chr12 18416297 18416787 -125865702 + L1MEc LINE L1 1170 1688 -4708 * 5158 87 8 19 chr12 18416775 18417650 -125864839 + L1P1 LINE L1 4614 5478 -694 21 36 0 0 chr12 18418406 18418434 -125864055 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 18418587 18418612 -125863877 + AT_rich Low_complexity Low_complexity 1 25 0 943 42 25 0 chr12 18418939 18419058 -125863431 - L1P LINE L1 -1852 4294 4173 539 95 0 0 chr12 18419071 18419155 -125863334 + L1P1 LINE L1 5459 5542 -613 469 225 109 14 chr12 18419291 18419429 -125863060 + L2 LINE L2 1377 1527 -1787 1259 336 152 2 chr12 18419430 18419995 -125862494 + L2 LINE L2 2006 2655 -659 1090 164 82 86 chr12 18420006 18420262 -125862227 - Tigger3(Golem) DNA MER2_type -2773 256 2 1035 278 57 39 chr12 18420809 18421251 -125861238 + L1MCc LINE L1 17 466 -5957 1090 279 72 63 chr12 18421326 18422478 -125860011 + L1MCc LINE L1 655 1822 -4938 722 282 52 134 chr12 18422696 18423352 -125859137 + L1MDa LINE L1 34 635 -5905 1123 263 75 18 chr12 18423613 18424283 -125858206 + L1MDa LINE L1 2159 2832 -3708 334 159 171 0 chr12 18424295 18424383 -125858106 + L1MDa LINE L1 3903 4005 -2535 * 1002 189 52 21 chr12 18424362 18424595 -125857894 + L1MC1 LINE L1 6479 6718 -9 1307 227 3 7 chr12 18424604 18424890 -125857599 + L1MDa LINE L1 4181 4465 -2075 289 185 120 20 chr12 18424985 18425085 -125857404 + L1ME1 LINE L1 36 254 -6289 316 185 0 109 chr12 18425115 18425207 -125857282 + L1ME1 LINE L1 4500 4581 -1959 227 284 12 0 chr12 18425302 18425383 -125857106 + (TA)n Simple_repeat Simple_repeat 1 82 0 2518 243 45 31 chr12 18425436 18426584 -125855905 + L1ME1 LINE L1 4800 5958 -602 1095 194 18 98 chr12 18426593 18426939 -125855550 + MLT1B LTR MaLR 59 377 -13 1628 264 80 9 chr12 18426943 18427507 -125854982 + L1ME1 LINE L1 5952 6555 -5 224 401 35 7 chr12 18427862 18428004 -125854485 + MIR3 SINE MIR 40 185 -23 306 106 0 0 chr12 18428102 18428149 -125854340 + (CCTA)n Simple_repeat Simple_repeat 3 49 0 21 0 0 0 chr12 18428261 18428282 -125854207 + AT_rich Low_complexity Low_complexity 1 21 0 1792 142 7 0 chr12 18428323 18428605 -125853884 + AluSx SINE Alu 1 284 -28 3797 39 0 0 chr12 18428605 18429062 -125853427 + L1PA3 LINE L1 5696 6152 -3 503 310 116 38 chr12 18429322 18429641 -125852848 + L3 LINE CR1 1230 1573 -4 345 272 40 48 chr12 18429682 18429807 -125852682 + L3 LINE CR1 1337 1460 -117 1704 255 48 10 chr12 18430405 18430820 -125851669 - MLT1F1 LTR MaLR 0 567 137 21 36 0 0 chr12 18432575 18432603 -125849886 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 18433043 18433075 -125849414 + AT_rich Low_complexity Low_complexity 1 32 0 1992 170 49 30 chr12 18433142 18433548 -125848941 - MLT2D LTR ERVL 0 414 1 2560 40 0 3 chr12 18434794 18435095 -125847394 + AluY SINE Alu 11 310 -1 3292 175 6 38 chr12 18435107 18435800 -125846689 + L1PA16 LINE L1 5479 6149 -17 28 71 0 0 chr12 18435927 18435983 -125846506 + AT_rich Low_complexity Low_complexity 1 56 0 795 297 112 24 chr12 18436043 18436383 -125846106 - L2 LINE L2 -535 2779 2410 678 197 7 29 chr12 18436457 18436594 -125845895 + THE1C LTR MaLR 3 136 -239 373 211 11 11 chr12 18436594 18436684 -125845805 + L1PA16 LINE L1 6060 6149 -17 1158 148 20 15 chr12 18436879 18437091 -125845398 + THE1C LTR MaLR 143 355 0 21 0 0 0 chr12 18437304 18437325 -125845164 + AT_rich Low_complexity Low_complexity 1 21 0 2256 78 0 36 chr12 18437562 18437871 -125844618 + AluY SINE Alu 1 298 -13 228 178 22 0 chr12 18438454 18438499 -125843990 + A-rich Low_complexity Low_complexity 2 47 0 263 378 68 55 chr12 18439240 18439621 -125842868 - L2 LINE L2 0 3313 2928 1394 234 8 44 chr12 18440049 18440437 -125842052 + MLT1A2 LTR MaLR 1 374 0 442 362 5 9 chr12 18440529 18440739 -125841750 + L2 LINE L2 2152 2360 -954 418 216 0 0 chr12 18440835 18440909 -125841580 + MLT1H LTR MaLR 51 124 -425 5148 163 35 30 chr12 18440959 18442229 -125840260 - L1MA5 LINE L1 0 6300 5009 1916 146 33 3 chr12 18442229 18442531 -125839958 - AluSx SINE Alu -1 311 1 5148 163 35 30 chr12 18442531 18443023 -125839466 - L1MA5 LINE L1 -1291 5009 4521 343 280 75 0 chr12 18443033 18443140 -125839349 + MLT1H LTR MaLR 236 350 -199 352 349 35 12 chr12 18443298 18443467 -125839022 + L2 LINE L2 2757 2929 -385 435 147 33 7 chr12 18443497 18443647 -125838842 + (TA)n Simple_repeat Simple_repeat 2 155 0 564 273 33 112 chr12 18443661 18443991 -125838498 + L2 LINE L2 3010 3313 0 759 106 18 0 chr12 18444080 18444193 -125838296 - AluY SINE Alu 0 311 197 23 33 0 0 chr12 18444859 18444889 -125837600 + AT_rich Low_complexity Low_complexity 1 30 0 461 253 67 33 chr12 18444954 18445104 -125837385 - MLT1G LTR MaLR -2 588 434 281 340 58 16 chr12 18445356 18445544 -125836945 - MLT1F1 LTR MaLR -343 224 29 7430 203 22 12 chr12 18445544 18446161 -125836328 - L1P5 LINE L1 -708 5443 4833 2211 213 32 10 chr12 18446161 18446658 -125835831 + LTR22 LTR ERVK 1 508 -1 7430 203 22 12 chr12 18446658 18447827 -125834662 - L1P5 LINE L1 -1318 4833 3655 4498 105 4 28 chr12 18447827 18448528 -125833961 + L1PB1 LINE L1 5465 6151 0 230 152 0 0 chr12 18448556 18448589 -125833900 - tRNA-Lys-AAG tRNA tRNA -43 33 1 21 0 0 0 chr12 18448822 18448843 -125833646 + AT_rich Low_complexity Low_complexity 1 21 0 2094 118 13 3 chr12 18449187 18449492 -125832997 + AluSx SINE Alu 1 308 -4 324 279 44 22 chr12 18449987 18450123 -125832366 - MLT1-int LTR MaLR -910 461 323 979 235 32 4 chr12 18450125 18450372 -125832117 - L1MC3 LINE L1 0 7785 7532 36 23 0 0 chr12 18450409 18450452 -125832037 + AT_rich Low_complexity Low_complexity 1 43 0 1059 428 56 0 chr12 18450452 18450737 -125831752 - AluSx SINE Alu -1 301 1 23 0 0 0 chr12 18450788 18450811 -125831678 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr12 18451725 18451752 -125830737 + AT_rich Low_complexity Low_complexity 1 27 0 854 299 48 14 chr12 18452966 18453257 -125829232 + L2 LINE L2 1129 1429 -1885 765 226 62 57 chr12 18453291 18453465 -125829024 + MLT1E LTR MaLR 51 223 -370 596 151 33 46 chr12 18453465 18453587 -125828902 - L1MA8 LINE L1 -2 6289 6168 478 95 81 0 chr12 18453587 18453661 -125828828 + MADE1 DNA Mariner 1 80 0 596 151 33 46 chr12 18453661 18453690 -125828799 - L1MA8 LINE L1 -123 6168 6140 765 226 62 57 chr12 18453690 18454081 -125828408 + MLT1E LTR MaLR 223 591 -2 181 267 0 0 chr12 18454110 18454155 -125828334 + L2 LINE L2 1453 1497 -1817 1865 140 3 3 chr12 18454170 18454456 -125828033 - AluSx SINE Alu -20 292 7 2523 40 3 0 chr12 18454493 18454796 -125827693 - AluYa5 SINE Alu -7 304 1 258 32 0 0 chr12 18454879 18454910 -125827579 + (TG)n Simple_repeat Simple_repeat 2 32 0 318 288 9 9 chr12 18454992 18455103 -125827386 + (TA)n Simple_repeat Simple_repeat 1 111 0 1007 340 70 6 chr12 18455157 18455645 -125826844 + L2 LINE L2 1846 2364 -950 568 310 188 15 chr12 18455647 18456205 -125826284 + L2 LINE L2 2522 3179 -134 215 354 0 0 chr12 18456362 18456427 -125826062 - MIR SINE MIR -187 75 11 261 0 0 0 chr12 18457173 18457202 -125825287 + (GA)n Simple_repeat Simple_repeat 2 30 0 237 314 23 23 chr12 18458603 18458689 -125823800 + MIR SINE MIR 2 87 -175 253 267 38 29 chr12 18458713 18458818 -125823671 - MLT1L LTR MaLR -13 602 497 262 342 64 16 chr12 18458981 18459168 -125823321 + MLT1L LTR MaLR 368 563 -52 349 295 42 58 chr12 18459615 18459805 -125822684 + MIR SINE MIR 76 262 0 474 335 83 54 chr12 18459872 18460353 -125822136 + LTR33 LTR ERVL 26 520 -1 2300 90 3 10 chr12 18460390 18460702 -125821787 - AluSg SINE Alu 0 310 1 22 70 0 0 chr12 18460900 18460943 -125821546 + AT_rich Low_complexity Low_complexity 1 43 0 2186 96 3 0 chr12 18461061 18461343 -125821146 + AluSq SINE Alu 5 287 -26 2505 49 20 0 chr12 18461352 18461656 -125820833 + AluY SINE Alu 1 310 -1 456 292 113 35 chr12 18461823 18462107 -125820382 + LTR67 LTR ERVL 202 507 -50 1335 133 17 43 chr12 18462517 18462750 -125819739 - AluSp SINE Alu -86 227 1 232 172 31 16 chr12 18462830 18462894 -125819595 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 1324 223 51 33 chr12 18462902 18463234 -125819255 - MER7A DNA MER2_type -10 336 1 1339 228 76 42 chr12 18463243 18463690 -125818799 - MLT1C LTR MaLR 0 467 6 305 280 0 50 chr12 18463920 18464020 -125818469 + L1ME4a LINE L1 5989 6083 -38 259 346 76 19 chr12 18464300 18464471 -125818018 + MIR SINE MIR 23 206 -56 211 140 70 0 chr12 18464781 18464838 -125817651 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 235 146 18 36 chr12 18464950 18465005 -125817484 + (TA)n Simple_repeat Simple_repeat 1 54 0 1148 99 93 0 chr12 18465208 18465390 -125817099 - L1MA5A LINE L1 -12 6285 6087 27 0 0 0 chr12 18465631 18465658 -125816831 + AT_rich Low_complexity Low_complexity 1 27 0 2362 116 24 5 chr12 18465659 18466038 -125816451 - L1PA16 LINE L1 -9 6157 5772 722 314 21 42 chr12 18466068 18466683 -125815806 - L1ME3A LINE L1 -241 5929 5328 325 44 0 22 chr12 18467525 18467570 -125814919 + MLT2A2 LTR ERVL 407 450 -3 344 59 20 0 chr12 18467570 18467621 -125814868 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 351 0 0 0 chr12 18467698 18467737 -125814752 + (TA)n Simple_repeat Simple_repeat 1 39 0 287 267 23 61 chr12 18467766 18467897 -125814592 + L1MC4 LINE L1 7917 8042 0 369 322 61 26 chr12 18468075 18468305 -125814184 + L1ME LINE L1 3973 4210 -1936 2102 88 32 0 chr12 18468327 18468611 -125813878 - AluY SINE Alu -18 293 1 21 0 0 0 chr12 18468612 18468633 -125813856 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 18468687 18468708 -125813781 + (A)n Simple_repeat Simple_repeat 1 21 0 410 255 0 28 chr12 18468762 18468868 -125813621 + MER106B DNA MER1_type 21 123 -936 521 309 80 20 chr12 18468956 18469157 -125813332 - MLT1I LTR MaLR -52 357 145 369 225 0 0 chr12 18469157 18469246 -125813243 + (TA)n Simple_repeat Simple_repeat 1 89 0 229 214 71 12 chr12 18469251 18469335 -125813154 + L1MC4 LINE L1 6615 6703 -1339 242 322 0 0 chr12 18469351 18469441 -125813048 + L1MC4 LINE L1 6614 6703 -1339 486 252 0 0 chr12 18469442 18469573 -125812916 + (TA)n Simple_repeat Simple_repeat 1 131 0 234 337 0 0 chr12 18469579 18469668 -125812821 - L1MC4 LINE L1 -1340 6702 6614 * 262 284 23 0 chr12 18469644 18469732 -125812757 + L1MC4 LINE L1 6614 6703 -1339 249 172 0 35 chr12 18469702 18469760 -125812729 - L1MC4 LINE L1 -1339 6703 6648 * 325 296 39 61 chr12 18470011 18470241 -125812248 + L1ME LINE L1 4550 4774 -1372 403 275 117 39 chr12 18470280 18470950 -125811539 + L1ME LINE L1 4862 5575 -587 2737 138 9 0 chr12 18471240 18471714 -125810775 - THE1B-int LTR MaLR -1150 430 1 1895 164 25 33 chr12 18471714 18471891 -125810598 - THE1B LTR MaLR 0 364 187 2491 14 0 0 chr12 18471891 18472166 -125810323 + AluYa5 SINE Alu 37 311 0 1895 164 25 33 chr12 18472166 18472355 -125810134 - THE1B LTR MaLR -177 187 1 9006 196 14 11 chr12 18472355 18474569 -125807920 + L1P5 LINE L1 3301 5514 -637 1303 214 86 12 chr12 18474564 18474901 -125807588 + L1MA10 LINE L1 5972 6333 -1 * 279 100 0 0 chr12 18474962 18475002 -125807487 - MADE1 DNA Mariner -40 40 1 200 182 0 0 chr12 18475430 18475463 -125807026 + (TG)n Simple_repeat Simple_repeat 2 34 0 486 404 56 23 chr12 18475648 18476079 -125806410 - L2 LINE L2 -1 3271 2827 185 330 67 57 chr12 18476265 18476474 -125806015 - L2 LINE L2 -774 2540 2330 230 159 0 0 chr12 18477525 18477569 -125804920 + (TA)n Simple_repeat Simple_repeat 1 44 0 219 139 0 0 chr12 18478538 18478574 -125803915 + (T)n Simple_repeat Simple_repeat 1 36 0 1186 260 65 68 chr12 18479010 18479702 -125802787 + Charlie7 DNA MER1_type 34 723 -1889 183 162 0 0 chr12 18479793 18479830 -125802659 + (TA)n Simple_repeat Simple_repeat 1 37 0 528 305 70 10 chr12 18480323 18480523 -125801966 - MIR SINE MIR 0 262 51 22 35 0 0 chr12 18481358 18481387 -125801102 + AT_rich Low_complexity Low_complexity 1 29 0 570 303 63 31 chr12 18482131 18482385 -125800104 + MIR SINE MIR 1 262 0 371 303 76 28 chr12 18482621 18482832 -125799657 - L2 LINE L2 0 3313 3009 985 248 106 20 chr12 18483000 18483303 -125799186 - MER2 DNA MER2_type -16 329 1 23 54 0 0 chr12 18483315 18483352 -125799137 + AT_rich Low_complexity Low_complexity 1 37 0 330 335 197 0 chr12 18483429 18483647 -125798842 - MIR SINE MIR 0 262 2 24 0 0 0 chr12 18483704 18483728 -125798761 + AT_rich Low_complexity Low_complexity 1 24 0 217 346 56 19 chr12 18484087 18484194 -125798295 - MIR SINE MIR 0 262 152 1893 53 0 0 chr12 18484269 18484497 -125797992 - AluY SINE Alu -8 303 76 432 0 0 0 chr12 18485762 18485810 -125796679 + (CA)n Simple_repeat Simple_repeat 1 48 0 267 194 65 0 chr12 18486424 18486517 -125795972 + (TA)n Simple_repeat Simple_repeat 2 100 0 228 35 0 0 chr12 18486525 18486554 -125795935 + (CA)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr12 18487204 18487231 -125795258 + (TG)n Simple_repeat Simple_repeat 2 28 0 1561 179 7 23 chr12 18487487 18487788 -125794701 + AluJb SINE Alu 17 312 0 332 344 53 8 chr12 18488329 18488460 -125794029 + MIR3 SINE MIR 21 157 -51 50 59 0 0 chr12 18488793 18488878 -125793611 + AT_rich Low_complexity Low_complexity 1 85 0 22 0 0 0 chr12 18489294 18489316 -125793173 + AT_rich Low_complexity Low_complexity 1 22 0 780 237 17 6 chr12 18489608 18489785 -125792704 - MER58A DNA MER1_type 0 224 46 23 54 0 0 chr12 18490148 18490185 -125792304 + AT_rich Low_complexity Low_complexity 1 37 0 846 259 89 25 chr12 18490853 18491177 -125791312 - L1ME2 LINE L1 -9 6155 5811 1188 294 86 51 chr12 18491183 18493323 -125789166 - L1MEc LINE L1 -4025 2371 141 2482 20 7 0 chr12 18493886 18494184 -125788305 + L1P LINE L1 2186 2485 -3661 2815 167 44 0 chr12 18494292 18494820 -125787669 - L1PBa LINE L1 -6312 551 1 981 303 79 19 chr12 18494829 18495566 -125786923 - L1M1 LINE L1 -3982 3583 2803 1061 270 45 16 chr12 18495594 18495976 -125786513 - L1M1 LINE L1 -4921 2568 2176 901 345 28 16 chr12 18495994 18496429 -125786060 - L1M1 LINE L1 -5697 1799 1360 376 322 56 14 chr12 18498896 18499039 -125783450 + MIR SINE MIR 54 202 -60 25 31 0 0 chr12 18500029 18500061 -125782428 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 18501317 18501347 -125781142 + AT_rich Low_complexity Low_complexity 1 30 0 1043 63 0 28 chr12 18501891 18502033 -125780456 + L1PA10 LINE L1 6031 6168 0 3871 116 9 7 chr12 18502336 18502906 -125779583 + MER39B LTR ERV1 4 574 -79 1371 86 19 10 chr12 18502933 18503142 -125779347 + L1MA6 LINE L1 6090 6300 0 460 363 103 32 chr12 18503386 18503859 -125778630 - L2 LINE L2 -2 3270 2744 2154 109 0 25 chr12 18503859 18504180 -125778309 + AluSq SINE Alu 1 313 0 460 363 103 32 chr12 18504180 18504298 -125778191 - L2 LINE L2 -528 2744 2636 404 302 38 33 chr12 18504728 18504893 -125777596 - MIR SINE MIR -67 141 3 186 339 24 57 chr12 18505554 18505678 -125776811 + MIR SINE MIR 1 120 -142 286 299 164 45 chr12 18505791 18505992 -125776497 + LTR67 LTR ERVL 108 332 -225 26 50 0 0 chr12 18506735 18506775 -125775714 + AT_rich Low_complexity Low_complexity 1 40 0 954 278 57 22 chr12 18506973 18507379 -125775110 + L1ME3A LINE L1 5532 5951 -219 22 0 0 0 chr12 18509718 18509740 -125772749 + AT_rich Low_complexity Low_complexity 1 22 0 2638 176 0 2 chr12 18509749 18510231 -125772258 - L1P LINE L1 -1542 4604 4124 4276 325 90 34 chr12 18510272 18512746 -125769743 + L2 LINE L2 28 2638 -676 256 326 7 0 chr12 18512775 18512919 -125769570 - L1M4 LINE L1 -805 5341 5197 183 232 73 37 chr12 18514869 18514951 -125767538 + MIR SINE MIR 132 216 -46 25 51 0 0 chr12 18515418 18515457 -125767032 + AT_rich Low_complexity Low_complexity 1 39 0 237 373 20 20 chr12 18515473 18515674 -125766815 + MIR SINE MIR 62 262 0 1429 208 64 22 chr12 18515793 18516133 -125766356 + MLT1A1 LTR MaLR 4 365 0 32 26 0 0 chr12 18516304 18516343 -125766146 + AT_rich Low_complexity Low_complexity 1 39 0 25 65 0 0 chr12 18516476 18516522 -125765967 + AT_rich Low_complexity Low_complexity 1 46 0 244 253 24 12 chr12 18517673 18517756 -125764733 + L1MDa LINE L1 1274 1357 -5183 637 277 30 24 chr12 18517811 18518147 -125764342 - L1M4c LINE L1 -3994 2390 2053 516 220 27 0 chr12 18518145 18518307 -125764182 + L1P LINE L1 4674 4846 -1300 * 276 172 0 0 chr12 18518320 18518378 -125764111 + (TA)n Simple_repeat Simple_repeat 2 59 0 301 196 0 0 chr12 18518378 18518434 -125764055 - L1MC4 LINE L1 -1339 6703 6648 279 0 0 0 chr12 18518434 18518465 -125764024 + (GA)n Simple_repeat Simple_repeat 2 32 0 1608 247 31 9 chr12 18518465 18518919 -125763570 + L1P LINE L1 4800 5263 -883 303 73 0 0 chr12 18519019 18519060 -125763429 + L1PA7 LINE L1 6101 6141 -13 921 220 155 25 chr12 18519677 18520000 -125762489 + MLT1A1 LTR MaLR 1 365 0 2034 162 29 6 chr12 18521211 18521551 -125760938 + MER7A DNA MER2_type 1 346 0 395 137 14 0 chr12 18522747 18522820 -125759669 + CT-rich Low_complexity Low_complexity 2 75 0 493 306 105 48 chr12 18523313 18523871 -125758618 + L2 LINE L2 2711 3303 -10 24 53 0 0 chr12 18525927 18525965 -125756524 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr12 18527006 18527034 -125755455 + AT_rich Low_complexity Low_complexity 1 28 0 203 217 17 0 chr12 18527066 18527126 -125755363 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 440 291 5 3 chr12 18527212 18527332 -125755157 - MIR SINE MIR -30 178 57 6814 33 1 1 chr12 18527477 18528301 -125754188 + L1PA4 LINE L1 5329 6152 -3 369 0 0 0 chr12 18531893 18531934 -125750555 + (TG)n Simple_repeat Simple_repeat 2 42 0 297 266 16 0 chr12 18533929 18533993 -125748496 + polypurine Low_complexity Low_complexity 3 67 0 23 54 0 0 chr12 18534095 18534132 -125748357 + AT_rich Low_complexity Low_complexity 1 37 0 850 131 7 29 chr12 18534486 18534623 -125747866 + AluSc SINE Alu 1 134 -175 1972 115 7 0 chr12 18534631 18534909 -125747580 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr12 18534909 18534929 -125747560 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 679 284 91 23 chr12 18535352 18535717 -125746772 + L2 LINE L2 2771 3156 -157 1362 207 121 15 chr12 18536281 18536619 -125745870 + MLT1A2 LTR MaLR 1 374 0 2357 63 20 3 chr12 18536907 18537206 -125745283 + AluY SINE Alu 1 304 -7 23 0 0 0 chr12 18537365 18537388 -125745101 + AT_rich Low_complexity Low_complexity 1 23 0 188 324 62 74 chr12 18538889 18539065 -125743424 + L2 LINE L2 3098 3271 -1 241 274 0 48 chr12 18540059 18540121 -125742368 - L2 LINE L2 -10 3262 3204 884 143 136 0 chr12 18541211 18541348 -125741141 - MSTA LTR MaLR 0 428 272 6791 211 104 19 chr12 18541348 18542966 -125739523 - MER52A LTR ERV1 0 1755 1 1211 191 103 8 chr12 18542966 18543215 -125739274 - MSTA LTR MaLR -153 275 3 423 303 31 6 chr12 18543359 18543521 -125738968 + L3 LINE CR1 809 974 -603 2036 124 0 14 chr12 18544482 18544773 -125737716 - AluSc SINE Alu -17 292 6 1196 175 156 0 chr12 18546074 18546331 -125736158 + L1PA16 LINE L1 5868 6164 -2 30 0 0 0 chr12 18546341 18546371 -125736118 + AT_rich Low_complexity Low_complexity 1 30 0 276 100 0 0 chr12 18547764 18547804 -125734685 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 215 31 31 0 chr12 18548012 18548044 -125734445 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3150 143 25 0 chr12 18549819 18550302 -125732187 - MER1A DNA MER1_type 0 529 35 224 30 30 0 chr12 18550354 18550387 -125732102 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1001 221 50 99 chr12 18550427 18550811 -125731678 - MLT1A1 LTR MaLR 0 365 1 2106 222 31 2 chr12 18550812 18551227 -125731262 - MLT1A1-int LTR MaLR -1 1734 1308 961 188 74 0 chr12 18551329 18551531 -125730958 - MLT1A1-int LTR MaLR -1516 219 3 1110 207 41 98 chr12 18551533 18551920 -125730569 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr12 18553568 18553589 -125728900 + AT_rich Low_complexity Low_complexity 1 21 0 535 357 21 26 chr12 18553832 18554255 -125728234 + L1ME2 LINE L1 8 428 -5968 1961 138 3 10 chr12 18554307 18554603 -125727886 + AluSg SINE Alu 1 294 -16 239 306 12 0 chr12 18554806 18554891 -125727598 + L1ME2 LINE L1 2459 2544 -3671 692 217 187 3 chr12 18554894 18555096 -125727393 - MSTA LTR MaLR -2 426 203 1158 60 0 20 chr12 18555103 18555254 -125727235 - AluY SINE Alu -163 148 1 577 222 87 0 chr12 18555270 18555396 -125727093 - MSTA LTR MaLR -208 167 31 1047 280 117 40 chr12 18555397 18555944 -125726545 + L1ME2 LINE L1 3029 3667 -2548 513 32 0 0 chr12 18555944 18556007 -125726482 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1047 280 117 40 chr12 18556007 18556315 -125726174 + L1ME2 LINE L1 3667 3950 -2265 2983 262 65 22 chr12 18556315 18558278 -125724211 + L1ME2 LINE L1 4173 6224 -9 196 228 33 130 chr12 18558544 18558636 -125723853 + L3 LINE CR1 1449 1531 -46 744 204 0 26 chr12 18558871 18559023 -125723466 - MLT1E2 LTR MaLR 0 626 479 206 139 28 0 chr12 18561252 18561288 -125721201 + (CAT)n Simple_repeat Simple_repeat 3 39 0 1652 208 17 0 chr12 18612728 18613026 -125669463 - AluJb SINE Alu -9 303 1 23 33 0 0 chr12 18613029 18613059 -125669430 + AT_rich Low_complexity Low_complexity 1 30 0 214 325 38 0 chr12 18613432 18613512 -125668977 - L2 LINE L2 -8 3305 3223 * 517 288 63 14 chr12 18613506 18613728 -125668761 - L2 LINE L2 -733 2581 2349 3809 163 16 21 chr12 18613939 18614676 -125667813 + L1PB1 LINE L1 4461 5184 -967 405 0 0 0 chr12 18614676 18614721 -125667768 + (TAA)n Simple_repeat Simple_repeat 2 46 0 3809 163 16 21 chr12 18614721 18615326 -125667163 + L1PB1 LINE L1 5184 5791 -360 225 0 0 0 chr12 18615360 18615385 -125667104 + (TG)n Simple_repeat Simple_repeat 2 26 0 195 42 0 0 chr12 18615405 18615429 -125667060 + (CA)n Simple_repeat Simple_repeat 2 25 0 2418 107 22 8 chr12 18615429 18615784 -125666705 + L1PB1 LINE L1 5787 6149 -2 3042 148 21 14 chr12 18616013 18616574 -125665915 - L1MA4 LINE L1 0 6300 5736 264 386 64 29 chr12 18617031 18617202 -125665287 + MER5A DNA MER1_type 11 187 -2 1371 179 55 34 chr12 18617426 18617717 -125664772 - AluJb SINE Alu -9 303 7 884 73 0 0 chr12 18618519 18618629 -125663860 - AluY SINE Alu -10 301 192 224 154 19 0 chr12 18619544 18619596 -125662893 + (TA)n Simple_repeat Simple_repeat 2 54 0 558 227 5 60 chr12 18620443 18620628 -125661861 - LOR1-int LTR ERV1 -6647 1473 1299 21 0 0 0 chr12 18621419 18621440 -125661049 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 18622462 18622490 -125659999 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr12 18623275 18623298 -125659191 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 198 237 105 26 chr12 18624171 18624247 -125658242 + MIR SINE MIR 80 161 -101 318 291 102 0 chr12 18624625 18624752 -125657737 + MIR SINE MIR 67 206 -56 561 264 30 124 chr12 18624763 18625011 -125657478 + MER101B LTR ERV1 1 212 -358 1542 156 201 6 chr12 18625011 18625369 -125657120 - MSTA LTR MaLR 0 428 1 561 264 30 124 chr12 18625369 18625450 -125657039 + MER101B LTR ERV1 212 299 -271 427 378 65 13 chr12 18629288 18629518 -125652971 - MIR SINE MIR 0 262 21 544 337 127 23 chr12 18629546 18629932 -125652557 - L3 LINE CR1 -104 1473 1048 1282 162 8 17 chr12 18631041 18631275 -125651214 + AluJb SINE Alu 70 301 -11 1332 160 0 9 chr12 18631483 18631702 -125650787 + AluJb SINE Alu 82 298 -14 25 0 0 0 chr12 18631752 18631777 -125650712 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr12 18632984 18633007 -125649482 + AT_rich Low_complexity Low_complexity 1 23 0 269 293 38 38 chr12 18636023 18636129 -125646360 + L2 LINE L2 3190 3295 -18 371 344 185 32 chr12 18637395 18638122 -125644367 - L2 LINE L2 0 3313 2483 427 333 79 50 chr12 18638839 18639181 -125643308 - MLT1K LTR MaLR -234 354 3 33 25 0 0 chr12 18639221 18639261 -125643228 + AT_rich Low_complexity Low_complexity 1 40 0 1820 90 9 100 chr12 18639261 18639582 -125642907 - AluSq SINE Alu -21 292 1 23 54 0 0 chr12 18639858 18639895 -125642594 + AT_rich Low_complexity Low_complexity 1 37 0 408 286 23 64 chr12 18639895 18640161 -125642328 + L1M4 LINE L1 2232 2486 -3660 22 35 0 0 chr12 18640325 18640354 -125642135 + AT_rich Low_complexity Low_complexity 1 29 0 40 37 0 0 chr12 18640463 18640517 -125641972 + AT_rich Low_complexity Low_complexity 1 54 0 322 235 17 92 chr12 18640545 18640664 -125641825 + L1MB5 LINE L1 3 112 -6430 3361 257 41 46 chr12 18640783 18641051 -125641438 + L1MB5 LINE L1 350 618 -5924 1796 142 26 3 chr12 18641051 18641354 -125641135 + AluSg SINE Alu 1 310 0 3361 257 41 46 chr12 18641354 18642386 -125640103 + L1MB5 LINE L1 618 1643 -4899 897 229 80 0 chr12 18642401 18642650 -125639839 + L1MB5 LINE L1 1509 1777 -4869 2072 158 36 46 chr12 18642784 18643338 -125639151 + MLT2A2 LTR ERVL 1 554 0 262 286 0 44 chr12 18643351 18643442 -125639047 + L1MB2 LINE L1 582 668 -5907 3038 174 25 9 chr12 18643515 18644151 -125638338 + L1MB2 LINE L1 1985 2630 -4016 1685 188 22 8 chr12 18644157 18644525 -125637964 + L1MB3 LINE L1 5807 6179 -4 3324 194 28 35 chr12 18644531 18645361 -125637128 + L1MB2 LINE L1 4449 5272 -1372 3853 210 40 35 chr12 18645365 18646612 -125635877 + L1MB2 LINE L1 5425 6668 -1 955 257 34 34 chr12 18646610 18646937 -125635552 + L1MB5 LINE L1 1767 2093 -4553 * 1039 253 108 35 chr12 18647036 18647845 -125634644 + L1MB5 LINE L1 2363 3227 -3417 2044 222 10 32 chr12 18647873 18648073 -125634416 + L1MB5 LINE L1 5977 6180 -492 2378 230 18 6 chr12 18648073 18648582 -125633907 - MLT2B2 LTR ERVL 0 515 1 2044 222 10 32 chr12 18648582 18648880 -125633609 + L1MB5 LINE L1 6180 6464 -208 463 250 110 0 chr12 18648883 18649019 -125633470 + L1MB5 LINE L1 6513 6663 -9 23 33 0 0 chr12 18649052 18649082 -125633407 + AT_rich Low_complexity Low_complexity 1 30 0 240 167 0 0 chr12 18650158 18650206 -125632283 + Alu SINE Alu 259 306 -2 266 365 62 15 chr12 18651275 18651615 -125630874 - L1MC/D LINE L1 -1911 5897 5542 690 268 61 45 chr12 18651691 18651937 -125630552 + MIR SINE MIR 13 262 0 307 358 72 46 chr12 18652038 18652640 -125629849 - L2 LINE L2 -183 3089 2467 1923 139 13 0 chr12 18652675 18652977 -125629512 + AluSx SINE Alu 1 306 -6 225 0 0 0 chr12 18653142 18653167 -125629322 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1933 117 45 3 chr12 18653368 18653658 -125628831 + AluSx SINE Alu 2 303 -9 439 349 20 21 chr12 18653731 18653935 -125628554 - MIR SINE MIR -30 232 30 247 247 26 26 chr12 18655781 18655858 -125626631 - MIR SINE MIR 0 262 186 350 330 122 5 chr12 18656129 18656326 -125626163 - MIR SINE MIR -9 253 34 213 154 0 0 chr12 18656609 18656648 -125625841 + (CATA)n Simple_repeat Simple_repeat 2 40 0 348 64 0 0 chr12 18656656 18656703 -125625786 + (TG)n Simple_repeat Simple_repeat 2 48 0 33 43 0 0 chr12 18657352 18657399 -125625090 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr12 18657454 18657476 -125625013 + AT_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chr12 18657658 18657709 -125624780 + AT_rich Low_complexity Low_complexity 1 51 0 214 118 66 26 chr12 18658409 18658485 -125624004 + (TTATA)n Simple_repeat Simple_repeat 1 79 0 28 48 0 0 chr12 18658492 18658534 -125623955 + AT_rich Low_complexity Low_complexity 1 42 0 212 339 79 22 chr12 18658735 18658924 -125623565 - MIR3 SINE MIR -7 201 3 301 281 78 39 chr12 18660370 18660498 -125621991 - MIR SINE MIR -39 223 91 * 821 238 26 22 chr12 18660496 18660727 -125621762 - MIR SINE MIR 0 262 31 186 346 50 40 chr12 18661333 18661434 -125621055 + L2 LINE L2 2987 3088 -184 33 43 0 0 chr12 18661651 18661698 -125620791 + AT_rich Low_complexity Low_complexity 1 47 0 870 171 94 0 chr12 18662503 18662684 -125619805 + L1PBa LINE L1 3 200 -6663 12012 171 70 7 chr12 18662684 18666878 -125615611 + L1PBa LINE L1 634 5089 -1773 549 267 5 37 chr12 18667252 18667439 -125615050 + LOR1-int LTR ERV1 1293 1473 -6647 2606 323 108 35 chr12 18667995 18669744 -125612745 + L2 LINE L2 1084 3015 -298 2106 241 39 49 chr12 18669744 18670437 -125612052 + MER76 LTR ERV 1 686 -2 2606 323 108 35 chr12 18670437 18670752 -125611737 + L2 LINE L2 3015 3305 -8 203 346 115 0 chr12 18671639 18671717 -125610772 - L2 LINE L2 -2 3270 3184 1738 212 26 0 chr12 18672138 18672482 -125610007 + MLT1A1 LTR MaLR 4 356 -9 1184 327 168 19 chr12 18672615 18673389 -125609100 - L2 LINE L2 -498 2816 1928 23 0 0 0 chr12 18673595 18673618 -125608871 + AT_rich Low_complexity Low_complexity 1 23 0 632 77 11 0 chr12 18674021 18674112 -125608377 + (TTCC)n Simple_repeat Simple_repeat 4 95 0 23 33 0 0 chr12 18675540 18675570 -125606919 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 18675690 18675711 -125606778 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr12 18675749 18675782 -125606707 + AT_rich Low_complexity Low_complexity 1 33 0 285 169 0 0 chr12 18675958 18676017 -125606472 + (TA)n Simple_repeat Simple_repeat 2 60 0 210 37 0 0 chr12 18676428 18676455 -125606034 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2050 76 14 10 chr12 18676461 18676752 -125605737 - AluY SINE Alu -19 292 1 27 73 0 0 chr12 18676760 18676815 -125605674 + AT_rich Low_complexity Low_complexity 1 55 0 660 306 86 5 chr12 18677504 18677726 -125604763 - MIR SINE MIR -8 254 15 252 274 128 43 chr12 18678019 18678136 -125604353 - L2 LINE L2 0 3313 3187 569 105 0 12 chr12 18679325 18679411 -125603078 - AluSc SINE Alu -12 297 213 2583 20 7 0 chr12 18681265 18681567 -125600922 + AluY SINE Alu 1 304 -7 212 333 126 16 chr12 18682002 18682185 -125600304 - MIR SINE MIR -12 250 48 246 335 76 25 chr12 18683793 18683951 -125598538 + HAL1 LINE L1 384 549 -1958 1220 194 96 97 chr12 18684041 18684454 -125598035 + MSTD LTR MaLR 1 396 0 300 262 183 0 chr12 18684457 18684583 -125597906 + HAL1 LINE L1 1499 1647 -860 404 307 111 48 chr12 18684743 18685202 -125597287 + HAL1 LINE L1 1911 2398 -109 1220 281 111 28 chr12 18687693 18688905 -125593584 - L1MEc LINE L1 -2272 3943 2631 215 214 67 0 chr12 18689092 18689181 -125593308 + (TA)n Simple_repeat Simple_repeat 2 96 0 3821 28 15 0 chr12 18689320 18689783 -125592706 - L1PA4 LINE L1 -1 6154 5685 353 338 114 32 chr12 18689996 18690460 -125592029 - L1MEc LINE L1 -5039 1357 856 191 285 98 24 chr12 18690552 18690675 -125591814 + L2 LINE L2 2374 2505 -809 428 364 36 38 chr12 18691522 18691887 -125590602 + L2 LINE L2 2950 3313 0 237 73 91 0 chr12 18692056 18692111 -125590378 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 906 143 0 0 chr12 18692127 18692267 -125590222 + AluSp/q SINE Alu 161 300 -13 186 403 106 36 chr12 18692283 18692782 -125589707 - L2 LINE L2 -560 2754 2221 2093 185 82 13 chr12 18693173 18693604 -125588885 + MLT1C LTR MaLR 9 390 0 1928 176 84 0 chr12 18693848 18694241 -125588248 + MSTB LTR MaLR 1 426 0 182 299 45 15 chr12 18696247 18696314 -125586175 - L3 LINE CR1 -1319 258 190 427 260 44 61 chr12 18696495 18696676 -125585813 + MLT1K LTR MaLR 411 588 0 2441 116 6 6 chr12 18696976 18697339 -125585150 - THE1B LTR MaLR -1 363 1 469 314 82 79 chr12 18697647 18697988 -125584501 - L2 LINE L2 -4 3268 2927 3008 156 31 2 chr12 18697989 18698501 -125583988 + MER1A DNA MER1_type 1 527 0 3119 153 32 44 chr12 18698804 18699288 -125583201 + L1MC1 LINE L1 5655 6130 -203 2111 117 0 3 chr12 18699288 18699587 -125582902 + AluSx SINE Alu 1 298 -14 3119 153 32 44 chr12 18699587 18699788 -125582701 + L1MC1 LINE L1 6130 6332 -1 458 342 16 0 chr12 18700759 18700943 -125581546 - L2 LINE L2 -1287 2027 1841 * 1097 308 163 6 chr12 18700938 18701435 -125581054 + L2 LINE L2 1962 2536 -778 995 329 28 46 chr12 18701464 18701757 -125580732 + L2 LINE L2 2824 3106 -207 2291 107 3 0 chr12 18701757 18702067 -125580422 - AluSp SINE Alu 0 313 3 995 329 28 46 chr12 18702067 18702272 -125580217 + L2 LINE L2 3106 3313 0 21 57 0 0 chr12 18703543 18703578 -125578911 + AT_rich Low_complexity Low_complexity 1 35 0 525 175 21 10 chr12 18704436 18704533 -125577956 + MER4A LTR ERV1 1 98 -566 1637 148 161 75 chr12 18704533 18704905 -125577584 + MER4A LTR ERV1 261 664 0 33 25 0 0 chr12 18704945 18704985 -125577504 + AT_rich Low_complexity Low_complexity 1 40 0 1541 293 37 38 chr12 18704997 18705923 -125576566 + L1MD1 LINE L1 37 1127 -5413 398 172 0 0 chr12 18705927 18706018 -125576471 + AluS SINE Alu 221 311 0 2295 132 28 8 chr12 18706072 18706429 -125576060 + THE1B LTR MaLR 1 364 0 10253 95 8 86 chr12 18706429 18708135 -125574354 + THE1B-int LTR MaLR 1 1573 -7 2162 149 31 8 chr12 18708141 18708497 -125573992 + THE1B LTR MaLR 1 364 0 3818 255 34 22 chr12 18708497 18709859 -125572630 + L1MD1 LINE L1 4185 5562 -978 2228 176 41 10 chr12 18709853 18710360 -125572129 - L1MA8 LINE L1 -1479 4667 4145 * 1508 189 55 3 chr12 18710358 18710723 -125571766 + L1MA8 LINE L1 4665 5048 -1098 * 4335 171 17 18 chr12 18710723 18711602 -125570887 + L1MA8 LINE L1 5409 6286 -5 837 256 30 0 chr12 18711623 18711935 -125570554 + L1MD1 LINE L1 5567 5887 -743 936 272 101 17 chr12 18711935 18712343 -125570146 - LTR47B LTR ERVL 0 443 2 306 244 0 49 chr12 18712345 18712427 -125570062 - MER4B-int LTR ERV1 -683 6075 5998 541 361 46 41 chr12 18713173 18714159 -125568330 - LTR57-int LTR ERVL -1243 4100 3130 641 319 19 5 chr12 18714345 18714555 -125567934 - LTR57-int LTR ERVL -3278 2065 1853 3331 193 28 28 chr12 18714589 18715335 -125567154 + L1MD1 LINE L1 5890 6635 -1 384 119 0 0 chr12 18715402 18715461 -125567028 + (TA)n Simple_repeat Simple_repeat 2 60 0 285 28 0 0 chr12 18715461 18715491 -125566998 + (CA)n Simple_repeat Simple_repeat 1 30 0 438 20 0 0 chr12 18716388 18716439 -125566050 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr12 18717163 18717191 -125565298 + AT_rich Low_complexity Low_complexity 1 28 0 1703 197 34 8 chr12 18717530 18717885 -125564604 - MLT1A1 LTR MaLR 0 365 2 1842 212 59 162 chr12 18718204 18719428 -125563061 + MER52A LTR ERV1 656 1753 -2 2926 176 49 3 chr12 18719663 18720258 -125562231 - L1MA6 LINE L1 0 6300 5679 683 329 32 22 chr12 18720974 18721287 -125561202 + ERVL LTR ERVL 2546 2861 -2903 405 318 8 24 chr12 18721526 18721652 -125560837 + ERVL LTR ERVL 580 703 -5061 2051 230 89 71 chr12 18721802 18722746 -125559743 - L1MC3 LINE L1 -12 7773 6813 * 2759 259 61 17 chr12 18722745 18723890 -125558599 - L1M4 LINE L1 -2103 4043 2848 839 176 21 16 chr12 18723887 18724075 -125558414 + L1MA4 LINE L1 6098 6286 -14 * 28 0 0 0 chr12 18724095 18724123 -125558366 + AT_rich Low_complexity Low_complexity 1 28 0 1956 127 7 0 chr12 18724135 18724411 -125558078 - AluSq SINE Alu -31 282 5 1004 251 22 38 chr12 18724414 18724784 -125557705 - L1M4 LINE L1 -3319 2827 2464 23 33 0 0 chr12 18724845 18724875 -125557614 + AT_rich Low_complexity Low_complexity 1 30 0 4909 254 84 41 chr12 18724902 18727600 -125554889 - L1MCa LINE L1 -1229 5335 2314 2263 71 3 0 chr12 18727600 18727921 -125554568 - AluY SINE Alu 0 323 2 4909 254 84 41 chr12 18727921 18729763 -125552726 - L1MCa LINE L1 -4250 2314 553 1380 291 35 33 chr12 18729825 18730375 -125552114 - L1MCa LINE L1 -5491 554 4 595 277 13 0 chr12 18730375 18730530 -125551959 - MER58B DNA MER1_type -18 323 167 1193 306 64 8 chr12 18730586 18731056 -125551433 + ERVL LTR ERVL 909 1404 -4360 369 251 25 23 chr12 18731052 18731276 -125551213 + ERVL LTR ERVL 1799 2085 -3679 * 1669 154 17 17 chr12 18731277 18731576 -125550913 - AluJb SINE Alu -13 299 1 25 0 0 0 chr12 18732024 18732049 -125550440 + AT_rich Low_complexity Low_complexity 1 25 0 262 91 11 5 chr12 18733556 18733603 -125548886 - Alu SINE Alu -271 37 3 2292 59 0 7 chr12 18733603 18733893 -125548596 + AluYb8 SINE Alu 31 318 0 940 161 7 0 chr12 18733901 18734050 -125548439 + AluSg/x SINE Alu 152 301 -11 25 31 0 0 chr12 18734072 18734104 -125548385 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr12 18734320 18734348 -125548141 + AT_rich Low_complexity Low_complexity 1 28 0 584 126 11 21 chr12 18734858 18734953 -125547536 + FLAM SINE Alu 39 132 -11 1724 285 96 36 chr12 18734953 18736298 -125546191 - L1ME3A LINE L1 -7 6163 4738 683 173 33 61 chr12 18736321 18736511 -125545978 - L1MA7 LINE L1 -51 6240 6046 1923 175 0 0 chr12 18736511 18736819 -125545670 + AluSx SINE Alu 2 309 -3 683 173 33 61 chr12 18736819 18737348 -125545141 - L1MA7 LINE L1 -245 6046 5412 2573 192 23 0 chr12 18737352 18737879 -125544610 - L1MA7 LINE L1 -1821 4325 3787 1944 199 38 59 chr12 18737870 18738056 -125544433 + L1MB1 LINE L1 4862 5050 -1118 * 1952 128 68 11 chr12 18738056 18738409 -125544080 - THE1C LTR MaLR 0 375 3 1944 199 38 59 chr12 18738409 18739139 -125543350 + L1MB1 LINE L1 5050 5777 -391 324 213 61 6 chr12 18739139 18739303 -125543186 + (TA)n Simple_repeat Simple_repeat 1 173 0 189 107 33 74 chr12 18739307 18739429 -125543060 + (TATAA)n Simple_repeat Simple_repeat 1 117 0 256 168 84 0 chr12 18739446 18739541 -125542948 + (TA)n Simple_repeat Simple_repeat 2 104 0 1898 155 11 33 chr12 18739611 18739923 -125542566 + L1MB1 LINE L1 5815 6119 -49 1768 164 3 20 chr12 18739923 18740221 -125542268 + AluSx SINE Alu 1 293 -19 1898 155 11 33 chr12 18740221 18740270 -125542219 + L1MB1 LINE L1 6119 6168 0 794 224 66 76 chr12 18740311 18740615 -125541874 + LTR52 LTR ERVL 23 323 -98 2191 163 33 37 chr12 18740618 18741016 -125541473 - MSTA LTR MaLR 0 428 31 1895 85 111 4 chr12 18741016 18741287 -125541202 + AluYa8 SINE Alu 1 300 -10 2191 163 33 37 chr12 18741287 18741317 -125541172 - MSTA LTR MaLR -397 31 2 3180 164 5 55 chr12 18741318 18741940 -125540549 - MSTA-int LTR MaLR 0 1651 1061 362 194 14 0 chr12 18741940 18742012 -125540477 - MSTA LTR MaLR -355 73 1 587 261 130 15 chr12 18742188 18742587 -125539902 - L1MDa LINE L1 -2528 4012 3568 371 225 55 39 chr12 18742562 18742744 -125539745 - L1MDa LINE L1 -3926 2614 2445 * 1705 185 65 3 chr12 18742761 18743144 -125539345 - L1MC1 LINE L1 -1 6332 5926 1261 224 86 65 chr12 18743141 18743502 -125538987 - L1MCa LINE L1 -2736 3690 3309 * 2021 127 13 3 chr12 18743502 18743801 -125538688 + AluSx SINE Alu 2 303 -9 1261 224 86 65 chr12 18743801 18744042 -125538447 - L1MCa LINE L1 -3117 3309 3075 2315 122 32 0 chr12 18744058 18744402 -125538087 + THE1A LTR MaLR 1 355 0 8836 116 138 1 chr12 18744402 18745321 -125537168 + THE1A-int LTR MaLR 1 1176 -404 210 37 0 0 chr12 18745321 18745348 -125537141 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 8836 116 138 1 chr12 18745348 18745818 -125536671 + THE1A-int LTR MaLR 1176 1580 0 2705 85 6 0 chr12 18745818 18746171 -125536318 + THE1A LTR MaLR 1 355 0 811 208 6 0 chr12 18746181 18746340 -125536149 - FRAM SINE Alu -9 167 8 1531 247 66 18 chr12 18746360 18747035 -125535454 - L1MCa LINE L1 -3380 3046 2339 483 282 66 28 chr12 18747525 18747706 -125534783 - LTR33 LTR ERVL -326 195 8 667 351 22 36 chr12 18747926 18748178 -125534311 - HERVL LTR ERVL -311 5343 5100 2002 109 21 0 chr12 18748178 18748462 -125534027 + AluY SINE Alu 1 290 -21 667 351 22 36 chr12 18748462 18748707 -125533782 - HERVL LTR ERVL -554 5100 4853 21 0 0 0 chr12 18749852 18749873 -125532616 + AT_rich Low_complexity Low_complexity 1 21 0 3736 16 0 2 chr12 18751103 18751562 -125530927 + L1PA2 LINE L1 5711 6168 0 463 297 36 42 chr12 18751592 18751784 -125530705 + MIR SINE MIR 35 225 -37 26 30 0 0 chr12 18753498 18753531 -125528958 + AT_rich Low_complexity Low_complexity 1 33 0 1197 235 131 75 chr12 18754114 18755018 -125527471 - LTR1B LTR ERV1 0 1020 1 277 298 111 29 chr12 18757101 18757272 -125525217 - MIR SINE MIR -14 248 64 275 315 23 2 chr12 18757278 18757377 -125525112 + MIR SINE MIR 41 140 -68 255 180 11 45 chr12 18757553 18757642 -125524847 + CT-rich Low_complexity Low_complexity 2 87 0 21 36 0 0 chr12 18757966 18757994 -125524495 + AT_rich Low_complexity Low_complexity 1 28 0 357 325 35 0 chr12 18758124 18758238 -125524251 - L2 LINE L2 -4 3309 3192 2688 266 37 41 chr12 18759589 18761068 -125521421 - L1MD2 LINE L1 -232 6127 4661 191 340 109 39 chr12 18761703 18762015 -125520474 + L2 LINE L2 2256 2589 -725 188 292 14 28 chr12 18763334 18763406 -125519083 - L2 LINE L2 -314 2958 2888 413 0 39 0 chr12 18764253 18764305 -125518184 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 25 51 0 0 chr12 18765518 18765557 -125516932 + AT_rich Low_complexity Low_complexity 1 39 0 1182 260 24 68 chr12 18766041 18766453 -125516036 + MSTD LTR MaLR 1 394 -2 2196 61 44 10 chr12 18766690 18766984 -125515505 + AluY SINE Alu 1 304 -7 3465 274 80 32 chr12 18767100 18769595 -125512894 + L1M4 LINE L1 23 2813 -3831 1736 199 11 20 chr12 18769783 18770134 -125512355 + MLT1A1 LTR MaLR 5 352 -13 617 371 63 43 chr12 18770147 18770746 -125511743 - L2 LINE L2 -2518 796 186 1330 244 37 26 chr12 18770811 18771159 -125511330 - MLT1B LTR MaLR -29 361 10 280 119 34 0 chr12 18771228 18771287 -125511202 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 25 0 0 0 chr12 18771788 18771813 -125510676 + AT_rich Low_complexity Low_complexity 1 25 0 479 163 111 15 chr12 18772039 18772174 -125510315 - L1MA8 LINE L1 -4 6287 6140 1881 165 96 21 chr12 18772174 18772593 -125509896 + LTR7 LTR ERV1 1 450 0 8260 142 55 37 chr12 18772593 18774488 -125508001 + HERVH LTR ERV1 1 2259 -5454 2107 85 75 83 chr12 18774491 18774892 -125507597 + LTR14B LTR ERVK 1 608 0 8067 217 16 17 chr12 18774892 18776944 -125505545 + HERVH LTR ERV1 2255 4245 -3468 10666 30 4 7 chr12 18776956 18778303 -125504186 - L1P LINE L1 -1614 4532 3189 3865 14 0 0 chr12 18778303 18778742 -125503747 + L1PA2 LINE L1 5712 6155 0 2990 208 27 21 chr12 18778834 18778919 -125503570 + HERVH LTR ERV1 4314 4397 -3316 2418 72 0 3 chr12 18778919 18779225 -125503264 - AluY SINE Alu -6 305 1 2990 208 27 21 chr12 18779225 18779842 -125502647 + HERVH LTR ERV1 4397 5020 -2693 * 3315 115 6 10 chr12 18779827 18780350 -125502139 + HERVH LTR ERV1 7193 7713 0 1802 167 96 21 chr12 18780350 18780769 -125501720 + LTR7 LTR ERV1 1 450 0 342 161 74 0 chr12 18780770 18780851 -125501638 - L1MA8 LINE L1 -148 6143 6057 * 6356 166 35 30 chr12 18780849 18780917 -125501572 + L1P3 LINE L1 1 67 -6171 2268 64 0 14 chr12 18780917 18781213 -125501276 + AluY SINE Alu 19 310 -1 6356 166 35 30 chr12 18781213 18782602 -125499887 + L1P3 LINE L1 67 1504 -4734 3973 173 32 13 chr12 18782598 18783781 -125498708 - L1MA8 LINE L1 -219 6072 4874 * 11871 199 35 14 chr12 18783831 18787615 -125494874 + L1MA5 LINE L1 2419 6295 -5 230 233 20 7 chr12 18788715 18788865 -125493624 + (TA)n Simple_repeat Simple_repeat 2 153 0 31 0 0 0 chr12 18790162 18790193 -125492296 + AT_rich Low_complexity Low_complexity 1 31 0 222 287 184 11 chr12 18790489 18790576 -125491913 + L3b LINE CR1 1335 1436 -147 25 0 0 0 chr12 18790742 18790767 -125491722 + AT_rich Low_complexity Low_complexity 1 25 0 534 271 87 96 chr12 18791515 18792289 -125490200 - LTR41 LTR ERVL -6 767 1 471 347 86 0 chr12 18792464 18792686 -125489803 + MIR SINE MIR 7 247 -15 23 0 0 0 chr12 18793327 18793350 -125489139 + AT_rich Low_complexity Low_complexity 1 23 0 1057 266 68 32 chr12 18793628 18794038 -125488451 + MLT1C LTR MaLR 42 466 -1 474 305 120 6 chr12 18794074 18794241 -125488248 + MIR SINE MIR 19 204 -58 26 0 0 0 chr12 18794264 18794290 -125488199 + AT_rich Low_complexity Low_complexity 1 26 0 1142 272 155 30 chr12 18794377 18795505 -125486984 - L1ME3A LINE L1 -6 6164 4890 1783 178 7 0 chr12 18795698 18796002 -125486487 - AluJo SINE Alu -6 306 1 193 269 19 0 chr12 18796214 18796266 -125486223 + L2 LINE L2 3261 3313 0 2068 117 0 0 chr12 18796564 18796847 -125485642 + AluSx SINE Alu 1 283 -29 198 0 0 0 chr12 18796854 18796876 -125485613 + (CATA)n Simple_repeat Simple_repeat 3 24 0 267 79 0 0 chr12 18797101 18797139 -125485350 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr12 18798005 18798026 -125484463 + AT_rich Low_complexity Low_complexity 1 21 0 583 286 78 10 chr12 18798026 18798218 -125484271 - MIR SINE MIR -26 236 32 284 295 48 19 chr12 18798627 18798732 -125483757 - L2 LINE L2 -15 3298 3191 293 394 64 42 chr12 18798918 18799213 -125483276 + L2 LINE L2 2364 2651 -663 1653 194 0 16 chr12 18799213 18799517 -125482972 - AluJo SINE Alu -13 299 1 293 394 64 42 chr12 18799517 18799815 -125482674 + L2 LINE L2 2651 2970 -344 1880 211 60 16 chr12 18800253 18800737 -125481752 + MLT1D LTR MaLR 1 505 0 343 265 142 37 chr12 18800964 18801126 -125481363 - MER5A DNA MER1_type -2 187 9 360 239 138 73 chr12 18801455 18801744 -125480745 + L1ME3A LINE L1 5863 6170 0 1166 211 81 36 chr12 18802845 18803153 -125479336 + MER2 DNA MER2_type 1 322 -23 190 308 111 26 chr12 18803540 18803657 -125478832 - MIR SINE MIR -75 187 61 21 0 0 0 chr12 18803727 18803748 -125478741 + AT_rich Low_complexity Low_complexity 1 21 0 264 30 0 0 chr12 18805196 18805229 -125477260 + (CA)n Simple_repeat Simple_repeat 2 34 0 25 31 0 0 chr12 18805509 18805541 -125476948 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr12 18807125 18807174 -125475315 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr12 18808420 18808443 -125474046 + AT_rich Low_complexity Low_complexity 1 23 0 294 148 0 0 chr12 18809465 18809519 -125472970 + (TG)n Simple_repeat Simple_repeat 2 55 0 1286 272 24 62 chr12 18809749 18810168 -125472321 + MER70B LTR ERVL 14 416 -162 22 35 0 0 chr12 18810885 18810914 -125471575 + AT_rich Low_complexity Low_complexity 1 29 0 196 204 0 45 chr12 18810968 18811012 -125471477 - MIR SINE MIR -24 238 197 463 372 53 13 chr12 18811452 18811756 -125470733 - L2 LINE L2 -461 2853 2538 211 124 66 25 chr12 18812118 18812239 -125470250 + (TA)n Simple_repeat Simple_repeat 2 127 0 24 53 0 0 chr12 18812337 18812375 -125470114 + AT_rich Low_complexity Low_complexity 1 38 0 517 283 151 5 chr12 18812484 18812689 -125469800 - MIR SINE MIR 0 262 28 197 156 0 0 chr12 18812711 18812743 -125469746 + L2 LINE L2 3265 3296 -17 243 61 0 0 chr12 18814475 18814508 -125467981 + (TG)n Simple_repeat Simple_repeat 2 34 0 2109 80 0 4 chr12 18814987 18815261 -125467228 - AluY SINE Alu -5 306 34 659 278 17 0 chr12 18815459 18815639 -125466850 + L1MD3 LINE L1 7097 7279 -716 433 211 33 0 chr12 18815642 18815732 -125466757 + MLT1F1 LTR MaLR 5 97 -470 1933 238 51 30 chr12 18815752 18816324 -125466165 + L1MD3 LINE L1 7397 7980 -15 1827 152 7 3 chr12 18816394 18816706 -125465783 + AluSq SINE Alu 1 313 0 1479 195 0 10 chr12 18816846 18817138 -125465351 + L1PA16 LINE L1 5867 6155 -11 318 336 8 16 chr12 18817349 18817477 -125465012 + MIR SINE MIR 24 150 -112 442 360 68 48 chr12 18817513 18818269 -125464220 + L2 LINE L2 2535 3305 -8 1919 248 95 15 chr12 18818466 18819067 -125463422 + MER82 DNA MER2_type 1 649 -4 316 239 11 65 chr12 18819090 18819182 -125463307 - MER8 DNA MER2_type -152 87 1 21 0 0 0 chr12 18819987 18820008 -125462481 + AT_rich Low_complexity Low_complexity 1 21 0 210 193 0 0 chr12 18820684 18820741 -125461748 + (TA)n Simple_repeat Simple_repeat 1 57 0 23 68 0 0 chr12 18821677 18821721 -125460768 + AT_rich Low_complexity Low_complexity 1 44 0 253 122 0 0 chr12 18822427 18822468 -125460021 + L2 LINE L2 3272 3312 -1 24 32 0 0 chr12 18824975 18825006 -125457483 + AT_rich Low_complexity Low_complexity 1 31 0 2159 110 52 25 chr12 18826098 18826463 -125456026 + THE1C LTR MaLR 1 375 0 396 288 32 0 chr12 18826672 18826797 -125455692 + MIR SINE MIR 12 140 -122 210 189 14 27 chr12 18826839 18826913 -125455576 + (TA)n Simple_repeat Simple_repeat 2 74 0 185 179 0 0 chr12 18826941 18826969 -125455520 + MIR SINE MIR 209 236 -26 187 354 15 0 chr12 18828599 18828664 -125453825 - L2 LINE L2 -14 3258 3193 2003 190 38 14 chr12 18828878 18829300 -125453189 + MSTB1 LTR MaLR 1 432 0 6650 220 70 12 chr12 18829300 18830855 -125451634 + MSTB1-int LTR MaLR 6 1651 0 2237 173 20 43 chr12 18830858 18831297 -125451192 + MSTB1 LTR MaLR 4 432 0 201 356 35 0 chr12 18831321 18831436 -125451053 - MIR SINE MIR -131 131 13 256 386 102 14 chr12 18831688 18831983 -125450506 - L2 LINE L2 -445 2869 2549 719 345 62 17 chr12 18832315 18832816 -125449673 - HERV16 LTR ERVL -2918 2078 1688 329 158 12 0 chr12 18832850 18832932 -125449557 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 3679 207 65 12 chr12 18833054 18834186 -125448303 - L1M2 LINE L1 -743 5403 4262 2156 106 7 0 chr12 18834208 18834501 -125447988 - AluSg SINE Alu -14 296 2 8178 165 47 13 chr12 18834525 18836022 -125446467 + Tigger1 DNA MER2_type 3 1551 -867 3892 170 21 11 chr12 18836023 18836780 -125445709 - L1MA4A LINE L1 -236 7486 6722 8465 202 41 9 chr12 18836901 18838476 -125444013 - L1MA4A LINE L1 -844 6721 5198 354 23 0 0 chr12 18838476 18838519 -125443970 + (TC)n Simple_repeat Simple_repeat 2 44 0 * 369 43 0 0 chr12 18838518 18838565 -125443924 + (TG)n Simple_repeat Simple_repeat 2 48 0 8465 202 41 9 chr12 18838519 18839017 -125443472 - L1MA4A LINE L1 -2367 5198 4629 3128 152 29 16 chr12 18839033 18839580 -125442909 - MER41C LTR ERV1 0 554 1 3817 91 33 4 chr12 18839609 18840148 -125442341 - MER41C-int LTR ERV1 -3 7753 7199 * 9126 88 16 5 chr12 18840139 18841370 -125441119 - MER41C-int LTR ERV1 -1361 6395 5151 1251 131 5 5 chr12 18841363 18841561 -125440928 - MER41C-int LTR ERV1 -3315 4441 4244 * 17766 126 53 14 chr12 18841547 18843728 -125438761 - PRIMA41-int LTR ERV1 -4800 2956 637 402 39 0 0 chr12 18843728 18843780 -125438709 + (TG)n Simple_repeat Simple_repeat 2 53 0 17766 126 53 14 chr12 18843780 18844441 -125438048 - PRIMA41-int LTR ERV1 -7119 637 3 328 211 39 0 chr12 18844565 18844669 -125437820 + CT-rich Low_complexity Low_complexity 1 108 0 3009 264 44 17 chr12 18844673 18845637 -125436852 - L1PA15-16 LINE L1 -2977 4588 3569 2010 126 3 7 chr12 18845637 18845923 -125436566 - AluSx SINE Alu -27 285 1 3009 264 44 17 chr12 18845923 18846344 -125436145 - L1PA15-16 LINE L1 -3996 3569 3161 318 321 115 36 chr12 18846347 18846512 -125435977 - L1M2b LINE L1 -5822 1387 1210 2984 290 118 33 chr12 18846513 18848087 -125434402 - L1M2b LINE L1 -5501 1708 1 578 278 18 9 chr12 18848324 18848551 -125433938 - L1PA15-16 LINE L1 -4440 3125 2897 2047 266 35 31 chr12 18849014 18850221 -125432268 - L1M2 LINE L1 -4325 2843 1619 448 343 35 68 chr12 18850556 18850985 -125431504 - L1M2 LINE L1 -6739 429 15 1454 204 114 8 chr12 18850998 18851385 -125431104 - L1M2 LINE L1 -572 5740 5313 370 138 56 50 chr12 18851406 18851566 -125430923 + (TTATA)n Simple_repeat Simple_repeat 4 164 0 3406 225 29 14 chr12 18851570 18852458 -125430031 - L1M2 LINE L1 -864 5282 4381 3335 221 32 5 chr12 18852437 18853227 -125429262 + L1M2 LINE L1 3584 4394 -1752 * 440 330 98 63 chr12 18853414 18854062 -125428427 - HERV16 LTR ERVL -4097 899 224 811 278 32 0 chr12 18854062 18854278 -125428211 + MER58A DNA MER1_type 1 223 -1 440 330 98 63 chr12 18854278 18854316 -125428173 - HERV16 LTR ERVL -4772 224 189 228 319 11 43 chr12 18854327 18854421 -125428068 + MIR SINE MIR 62 152 -110 320 296 59 46 chr12 18855250 18855526 -125426963 - MER110A LTR ERV1 0 491 218 1045 287 62 71 chr12 18855714 18856210 -125426279 + MLT1E2 LTR MaLR 49 505 -121 1790 167 3 3 chr12 18856210 18856516 -125425973 + AluSx SINE Alu 1 306 0 1045 287 62 71 chr12 18856516 18856629 -125425860 + MLT1E2 LTR MaLR 505 617 -9 234 179 51 90 chr12 18856646 18856724 -125425765 - MER110A LTR ERV1 -353 115 41 423 132 0 0 chr12 18857416 18857484 -125425005 + (TA)n Simple_repeat Simple_repeat 2 69 0 2274 105 0 0 chr12 18858381 18858677 -125423812 - AluSg SINE Alu -12 298 3 299 294 42 17 chr12 18858728 18858847 -125423642 + MIR SINE MIR 138 259 -3 43 47 0 0 chr12 18858888 18858952 -125423537 + AT_rich Low_complexity Low_complexity 1 64 0 25 31 0 0 chr12 18859366 18859398 -125423091 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr12 18860116 18860145 -125422344 + AT_rich Low_complexity Low_complexity 1 29 0 21130 42 6 2 chr12 18861676 18865121 -125417368 - L1PA4 LINE L1 0 6155 2697 20765 58 3 1 chr12 18865258 18867893 -125414596 - L1P LINE L1 -3172 2974 334 420 274 19 0 chr12 18867900 18868057 -125414432 + L1MDa LINE L1 2491 2650 -3890 * 702 180 70 0 chr12 18868053 18868225 -125414264 + L1MA7 LINE L1 6108 6291 0 229 167 62 0 chr12 18868288 18868336 -125414153 - L1M4 LINE L1 -3796 2350 2300 377 259 61 0 chr12 18868387 18868518 -125413971 - L1M4 LINE L1 -1227 4919 4781 3840 239 51 22 chr12 18868526 18870363 -125412126 - L1M4 LINE L1 -384 5794 3902 2309 45 0 0 chr12 18870821 18871107 -125411382 - L1PA5 LINE L1 -3 6151 5866 327 246 40 62 chr12 18872202 18872426 -125410063 - MER113 DNA MER1_type? -299 222 4 23 68 0 0 chr12 18873150 18873194 -125409295 + AT_rich Low_complexity Low_complexity 1 44 0 21 71 0 0 chr12 18873300 18873342 -125409147 + AT_rich Low_complexity Low_complexity 1 42 0 225 356 17 17 chr12 18873434 18873552 -125408937 + MIR SINE MIR 74 191 -71 21 0 0 0 chr12 18873775 18873796 -125408693 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 18874377 18874406 -125408083 + AT_rich Low_complexity Low_complexity 1 29 0 392 286 128 50 chr12 18874431 18874786 -125407703 + L1MDa LINE L1 1269 1667 -4863 4262 193 32 55 chr12 18874811 18876794 -125405695 + L1MA8 LINE L1 3818 5726 -565 1361 163 56 14 chr12 18876794 18877075 -125405414 + L1MA8 LINE L1 5977 6276 -15 444 333 33 33 chr12 18877137 18877377 -125405112 + L1MDa LINE L1 1712 1951 -4589 1330 166 143 21 chr12 18880434 18880781 -125401708 - MSTA LTR MaLR -29 394 1 22 0 0 0 chr12 18881018 18881040 -125401449 + AT_rich Low_complexity Low_complexity 1 22 0 558 311 110 23 chr12 18883132 18883431 -125399058 + L3 LINE CR1 1217 1541 -36 25 31 0 0 chr12 18883498 18883530 -125398959 + AT_rich Low_complexity Low_complexity 1 32 0 257 262 58 29 chr12 18883831 18883934 -125398555 - MIR SINE MIR -68 194 89 200 167 0 56 chr12 18884114 18884168 -125398321 + A-rich Low_complexity Low_complexity 3 53 0 * 291 157 0 0 chr12 18884160 18884211 -125398278 + GA-rich Low_complexity Low_complexity 2 52 0 24 0 0 0 chr12 18886099 18886123 -125396366 + AT_rich Low_complexity Low_complexity 1 24 0 2550 39 0 0 chr12 18886242 18886547 -125395942 + AluY SINE Alu 1 305 -6 1358 275 123 16 chr12 18887264 18887752 -125394737 + MLT1F LTR MaLR 1 540 -2 271 385 26 17 chr12 18887766 18887883 -125394606 + L2 LINE L2 3155 3272 0 180 0 0 0 chr12 18888183 18888203 -125394286 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr12 18888484 18888513 -125393976 + AT_rich Low_complexity Low_complexity 1 29 0 2336 57 40 0 chr12 18889407 18889743 -125392746 - AluY SINE Alu 0 348 1 21 57 0 0 chr12 18889884 18889919 -125392570 + AT_rich Low_complexity Low_complexity 1 35 0 350 292 185 0 chr12 18890213 18890343 -125392146 + L2 LINE L2 3159 3312 -1 27 62 0 0 chr12 18891336 18891384 -125391105 + AT_rich Low_complexity Low_complexity 1 48 0 545 78 0 0 chr12 18892313 18892390 -125390099 + AluY SINE Alu 177 253 -58 337 323 57 31 chr12 18892537 18892729 -125389760 - L2 LINE L2 -874 2440 2244 23 0 0 0 chr12 18893167 18893190 -125389299 + AT_rich Low_complexity Low_complexity 1 23 0 204 299 0 30 chr12 18893472 18893539 -125388950 + L2 LINE L2 3204 3268 -4 264 319 59 25 chr12 18895078 18895197 -125387292 + MIR SINE MIR 60 182 -80 706 215 17 35 chr12 18895215 18895387 -125387102 + MER45A DNA AcHobo 1 169 -9 23 0 0 0 chr12 18895831 18895854 -125386635 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 18897128 18897157 -125385332 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr12 18897371 18897405 -125385084 + AT_rich Low_complexity Low_complexity 1 34 0 25 83 0 0 chr12 18897563 18897623 -125384866 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr12 18897814 18897836 -125384653 + AT_rich Low_complexity Low_complexity 1 22 0 344 274 18 73 chr12 18898180 18898344 -125384145 - L2 LINE L2 0 3313 3159 2034 196 125 51 chr12 18898784 18899391 -125383098 - L1MB8 LINE L1 -13 6165 5514 1445 114 0 0 chr12 18899393 18899603 -125382886 + L1PA13 LINE L1 5870 6079 -84 1536 241 69 20 chr12 18899618 18900310 -125382179 - L1MB8 LINE L1 -656 5528 4790 225 167 42 21 chr12 18900456 18900504 -125381985 + GA-rich Low_complexity Low_complexity 3 51 0 1237 272 80 12 chr12 18900504 18901066 -125381423 + L1M4 LINE L1 3035 3634 -2512 1332 94 6 6 chr12 18901077 18901258 -125381231 + AluSq SINE Alu 113 293 -20 189 171 0 0 chr12 18901494 18901529 -125380960 + (TA)n Simple_repeat Simple_repeat 2 36 0 297 0 0 0 chr12 18901529 18901562 -125380927 + (CA)n Simple_repeat Simple_repeat 2 34 0 876 272 70 33 chr12 18901678 18902130 -125380359 + L1M4c LINE L1 2084 2583 -3799 2060 105 3 35 chr12 18902130 18902445 -125380044 + AluSc SINE Alu 1 305 -4 876 272 70 33 chr12 18902445 18902635 -125379854 + L1M4c LINE L1 2583 2765 -3617 263 209 23 12 chr12 18902642 18902728 -125379761 - L1MC4 LINE L1 -1339 6703 6617 207 0 0 0 chr12 18902733 18902756 -125379733 + (TG)n Simple_repeat Simple_repeat 1 23 0 1769 132 4 0 chr12 18902947 18903204 -125379285 - AluSx SINE Alu -38 274 17 4831 260 76 41 chr12 18903252 18905138 -125377351 - L1M4 LINE L1 -4879 1976 11 22 0 0 0 chr12 18905238 18905260 -125377229 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr12 18905378 18905418 -125377071 + AT_rich Low_complexity Low_complexity 1 40 0 244 345 0 18 chr12 18905869 18905982 -125376507 + CT-rich Low_complexity Low_complexity 3 113 0 2335 103 130 8 chr12 18906456 18906855 -125375634 + LTR7 LTR ERV1 1 448 -2 23 68 0 0 chr12 18907567 18907611 -125374878 + AT_rich Low_complexity Low_complexity 1 44 0 25 95 0 0 chr12 18908736 18908810 -125373679 + AT_rich Low_complexity Low_complexity 1 74 0 23 78 0 0 chr12 18909316 18909367 -125373122 + AT_rich Low_complexity Low_complexity 1 51 0 262 156 31 0 chr12 18910424 18910488 -125372001 + (TA)n Simple_repeat Simple_repeat 2 67 0 449 290 37 67 chr12 18910716 18910939 -125371550 + MLT1H1 LTR MaLR 25 245 -310 350 270 34 62 chr12 18913976 18914154 -125368335 - MIR SINE MIR -6 256 84 822 241 77 14 chr12 18915139 18915359 -125367130 + MIR SINE MIR 29 262 0 318 211 8 106 chr12 18915741 18915864 -125366625 - L1MC4 LINE L1 -1337 6705 6595 362 159 0 0 chr12 18916103 18916166 -125366323 + L1MA6 LINE L1 6227 6289 -11 22 0 0 0 chr12 18916525 18916547 -125365942 + AT_rich Low_complexity Low_complexity 1 22 0 26 100 0 0 chr12 18916775 18916845 -125365644 + AT_rich Low_complexity Low_complexity 1 70 0 1155 206 12 4 chr12 18917300 18917389 -125365100 + L1MA10 LINE L1 6071 6158 -176 207 0 0 0 chr12 18917389 18917412 -125365077 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1155 206 12 4 chr12 18917412 18917579 -125364910 + L1MA10 LINE L1 6158 6329 -5 183 357 9 45 chr12 18917717 18917829 -125364660 - MER5A DNA MER1_type -80 109 2 21 0 0 0 chr12 18917855 18917876 -125364613 + AT_rich Low_complexity Low_complexity 1 21 0 477 307 82 26 chr12 18918269 18918500 -125363989 + MIR SINE MIR 18 261 -1 22 56 0 0 chr12 18918657 18918693 -125363796 + AT_rich Low_complexity Low_complexity 1 36 0 275 271 7 79 chr12 18918695 18918835 -125363654 - HAL1 LINE L1 -5 2502 2373 3502 203 121 44 chr12 18918836 18919340 -125363149 - Tigger6a DNA MER2_type -514 1083 619 2644 101 5 8 chr12 18919340 18919716 -125362773 - THE1C LTR MaLR 0 375 1 9644 112 33 43 chr12 18919716 18921312 -125361177 - THE1C-int LTR MaLR 0 1580 1 2609 118 11 8 chr12 18921312 18921686 -125360803 - THE1C LTR MaLR 0 375 1 3502 203 121 44 chr12 18921686 18922182 -125360307 - Tigger6a DNA MER2_type -977 620 4 4311 214 20 9 chr12 18922373 18923272 -125359217 + MER49 LTR ERV1 15 923 0 231 304 71 68 chr12 18923354 18923676 -125358813 - MLT1I LTR MaLR -14 395 73 882 323 56 39 chr12 18923748 18924716 -125357773 - HAL1 LINE L1 -346 2161 1178 218 336 88 9 chr12 18925462 18925575 -125356914 - MIR3 SINE MIR -4 204 83 35036 49 7 2 chr12 18925624 18931748 -125350741 - L1PA4 LINE L1 -11 6144 1 23 33 0 0 chr12 18932204 18932234 -125350255 + AT_rich Low_complexity Low_complexity 1 30 0 216 346 119 10 chr12 18933007 18933108 -125349381 - L2 LINE L2 -221 3051 2940 23 68 0 0 chr12 18933913 18933957 -125348532 + AT_rich Low_complexity Low_complexity 1 44 0 2293 90 0 0 chr12 18934574 18934885 -125347604 + AluYa5 SINE Alu 1 311 0 1919 129 11 11 chr12 18935417 18935748 -125346741 - AluSp SINE Alu 0 331 1 783 326 164 27 chr12 18935752 18936453 -125346036 + L2 LINE L2 2516 3313 0 754 295 0 0 chr12 18939061 18939251 -125343238 + MIR SINE MIR 40 229 -33 3871 179 27 14 chr12 18939888 18940049 -125342440 - L1MA10 LINE L1 -11 6323 6166 321 26 0 0 chr12 18940049 18940087 -125342402 + (TG)n Simple_repeat Simple_repeat 2 39 0 3871 179 27 14 chr12 18940087 18940714 -125341775 - L1MA10 LINE L1 -168 6166 5525 1942 146 17 0 chr12 18941151 18941439 -125341050 - AluJb SINE Alu -19 293 1 1245 115 0 26 chr12 18942021 18942212 -125340277 - L1PA14 LINE L1 -9 6152 5967 183 255 21 0 chr12 18943814 18943861 -125338628 + MER5A DNA MER1_type 55 102 -87 279 133 0 0 chr12 18944414 18944459 -125338030 + (TA)n Simple_repeat Simple_repeat 1 45 0 641 11 23 23 chr12 18944730 18944818 -125337671 - L1PA4 LINE L1 0 6155 6068 317 24 24 0 chr12 18945163 18945205 -125337284 + (TG)n Simple_repeat Simple_repeat 2 44 0 26 64 0 0 chr12 18946064 18946111 -125336378 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr12 18947387 18947417 -125335072 + AT_rich Low_complexity Low_complexity 1 30 0 2320 109 0 6 chr12 18949262 18949575 -125332914 - AluSx SINE Alu -1 311 1 1805 117 224 8 chr12 18950433 18950785 -125331704 + MSTA LTR MaLR 1 428 0 1543 169 6 60 chr12 18951364 18951678 -125330811 + AluJb SINE Alu 1 297 -15 301 338 78 39 chr12 18954383 18954537 -125327952 - MIR SINE MIR -17 245 86 212 235 0 20 chr12 18957815 18957866 -125324623 - L2 LINE L2 0 3313 3264 2191 91 27 0 chr12 18957946 18958242 -125324247 + AluSq SINE Alu 1 304 -9 186 43 0 0 chr12 18958383 18958406 -125324083 + (TA)n Simple_repeat Simple_repeat 1 23 0 7818 12 1 0 chr12 18959070 18959965 -125322524 - L1PA2 LINE L1 0 6155 5260 407 41 0 0 chr12 18959964 18960013 -125322476 + L1PA2 LINE L1 5223 5271 -875 * 520 199 59 29 chr12 18960006 18960142 -125322347 - L1MB8 LINE L1 -41 6137 5998 22 0 0 0 chr12 18960163 18960185 -125322304 + AT_rich Low_complexity Low_complexity 1 22 0 233 335 132 33 chr12 18960406 18960558 -125321931 - MLT1J LTR MaLR -173 338 172 24 32 0 0 chr12 18960749 18960780 -125321709 + AT_rich Low_complexity Low_complexity 1 31 0 263 114 71 0 chr12 18961259 18961329 -125321160 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 1064 331 90 46 chr12 18961504 18962727 -125319762 - L2 LINE L2 -18 3295 2022 228 202 36 24 chr12 18964333 18964417 -125318072 + (TA)n Simple_repeat Simple_repeat 2 86 0 266 359 88 24 chr12 18966169 18966339 -125316150 - MIR3 SINE MIR -15 193 13 490 245 94 61 chr12 18966989 18967201 -125315288 + MER20 DNA MER1_type 1 219 0 703 231 0 20 chr12 18967458 18967605 -125314884 + FRAM SINE Alu 20 163 -13 22 0 0 0 chr12 18967652 18967674 -125314815 + AT_rich Low_complexity Low_complexity 1 22 0 313 325 9 18 chr12 18968258 18968372 -125314117 + L2 LINE L2 3199 3311 -2 3276 194 123 51 chr12 18968831 18970340 -125312149 - MER52A LTR ERV1 -5 1750 1 1032 152 0 0 chr12 18970497 18970648 -125311841 - AluSg/x SINE Alu -25 285 135 454 291 101 64 chr12 18971044 18971512 -125310977 - L2 LINE L2 -95 3177 2700 845 192 0 7 chr12 18971532 18971683 -125310806 - AluJo SINE Alu -16 286 137 2132 91 14 0 chr12 18971686 18971858 -125310631 - AluSp SINE Alu -21 292 113 962 42 0 0 chr12 18971858 18971977 -125310512 - L1PA5 LINE L1 -2 6152 6034 2132 91 14 0 chr12 18971977 18972090 -125310399 - AluSp SINE Alu -200 113 3 848 158 0 0 chr12 18972095 18972222 -125310267 - AluJo SINE Alu -182 130 4 381 363 138 11 chr12 18972561 18973004 -125309485 - L2 LINE L2 -1004 2310 1812 372 298 71 14 chr12 18973968 18974109 -125308380 - MIR SINE MIR -95 167 19 21 57 0 0 chr12 18975908 18975943 -125306546 + AT_rich Low_complexity Low_complexity 1 35 0 1118 289 58 83 chr12 18977102 18977909 -125304580 - L2 LINE L2 -84 3229 2442 333 287 180 41 chr12 18977909 18978153 -125304336 - L2 LINE L2 -1401 1913 1636 270 340 51 6 chr12 18978208 18978364 -125304125 - L2 LINE L2 -2155 1159 997 606 229 25 0 chr12 18978712 18978834 -125303655 + MER45A DNA AcHobo 2 126 -52 823 236 137 22 chr12 18978872 18979185 -125303304 - LTR52 LTR ERVL -70 351 3 258 299 120 0 chr12 18979250 18979367 -125303122 - LTR16A LTR ERVL -21 429 299 21 36 0 0 chr12 18980360 18980388 -125302101 + AT_rich Low_complexity Low_complexity 1 28 0 1750 202 64 13 chr12 18981257 18981634 -125300855 - MSTD LTR MaLR 0 396 1 25 0 0 0 chr12 18981726 18981751 -125300738 + AT_rich Low_complexity Low_complexity 1 25 0 1572 178 3 28 chr12 18981842 18982129 -125300360 + AluJb SINE Alu 1 280 -32 327 49 0 0 chr12 18982130 18982171 -125300318 + (GA)n Simple_repeat Simple_repeat 1 41 0 416 194 20 0 chr12 18982199 18982297 -125300192 + GA-rich Low_complexity Low_complexity 1 100 0 270 306 142 35 chr12 18982432 18982693 -125299796 - L3b LINE CR1 0 1583 1295 1791 124 0 33 chr12 18982795 18983069 -125299420 + AluSx SINE Alu 37 301 -11 509 290 170 26 chr12 18983549 18983884 -125298605 - L2 LINE L2 -228 3085 2688 * 798 267 53 50 chr12 18983849 18984246 -125298243 + L2 LINE L2 2183 2580 -734 1087 303 141 12 chr12 18984258 18984747 -125297742 - L2 LINE L2 -588 2726 2175 410 346 0 39 chr12 18984818 18984997 -125297492 - L2 LINE L2 -1330 1984 1813 24 0 0 0 chr12 18985943 18985967 -125296522 + AT_rich Low_complexity Low_complexity 1 24 0 507 189 98 14 chr12 18986600 18986743 -125295746 - ORSL DNA AcHobo -119 156 2 2771 225 89 39 chr12 19088312 19088864 -125193625 - L1MC3 LINE L1 -18 7767 7155 2213 81 0 37 chr12 19088864 19089186 -125193303 - AluSg SINE Alu 0 310 1 2771 225 89 39 chr12 19089186 19089496 -125192993 - L1MC3 LINE L1 -630 7155 6862 23885 172 25 25 chr12 19089501 19095881 -125186608 - L1PA10 LINE L1 -14 6469 10 5594 201 81 16 chr12 19095882 19096544 -125185945 - L1MC3 LINE L1 -909 6876 6258 1803 171 12 21 chr12 19096544 19096884 -125185605 + MER1B DNA MER1_type 1 337 0 5594 201 81 16 chr12 19096884 19097611 -125184878 - L1MC3 LINE L1 -1527 6258 5397 1077 187 76 0 chr12 19097613 19097645 -125184844 + AluJb SINE Alu 90 118 -194 183 42 0 0 chr12 19097645 19097669 -125184820 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1077 187 76 0 chr12 19097669 19097834 -125184655 + AluJb SINE Alu 118 302 -10 3258 259 57 14 chr12 19097835 19099073 -125183416 - L1MC3 LINE L1 -793 5353 4112 1103 277 58 12 chr12 19099073 19099213 -125183276 - L1MC3 LINE L1 -2956 3190 3058 2340 98 0 3 chr12 19099213 19099518 -125182971 - AluSc SINE Alu -5 304 1 1103 277 58 12 chr12 19099518 19099876 -125182613 - L1MC3 LINE L1 -3088 3058 2669 526 281 60 15 chr12 19099877 19100076 -125182413 + MIR SINE MIR 8 215 -47 22 0 0 0 chr12 19100118 19100140 -125182349 + AT_rich Low_complexity Low_complexity 1 22 0 209 328 57 94 chr12 19100902 19101183 -125181306 + L2 LINE L2 2852 3142 -130 456 67 0 0 chr12 19101183 19101243 -125181246 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 2434 56 3 0 chr12 19101246 19101550 -125180939 - AluY SINE Alu -6 305 1 209 328 57 94 chr12 19101550 19101666 -125180823 + L2 LINE L2 3144 3238 -34 466 343 23 17 chr12 19102167 19102339 -125180150 - LTR16C LTR ERVL -189 302 130 1178 345 61 25 chr12 19103183 19104065 -125178424 - HERV16 LTR ERVL -2102 2894 1981 21 71 0 0 chr12 19104837 19104879 -125177610 + AT_rich Low_complexity Low_complexity 1 42 0 376 288 101 0 chr12 19105234 19105400 -125177089 - MIR SINE MIR -47 215 31 2327 264 26 46 chr12 19106384 19106941 -125175548 - L1ME1 LINE L1 -23 6143 5576 1784 142 0 43 chr12 19106941 19107244 -125175245 - AluSx SINE Alu -22 290 1 2470 59 0 0 chr12 19107250 19107555 -125174934 - AluY SINE Alu -6 305 1 2327 264 26 46 chr12 19107555 19107836 -125174653 - L1ME1 LINE L1 -595 5571 5315 25 0 0 0 chr12 19108207 19108232 -125174257 + AT_rich Low_complexity Low_complexity 1 25 0 262 266 0 0 chr12 19109196 19109260 -125173229 + 7SK RNA RNA 33 96 -97 379 263 102 8 chr12 19109687 19109805 -125172684 - MER94 DNA DNA -1 133 5 1758 144 30 30 chr12 19109984 19110282 -125172207 + AluSx SINE Alu 1 298 -14 433 245 42 94 chr12 19113241 19113433 -125169056 - L2 LINE L2 -2 3311 3130 231 274 0 82 chr12 19113604 19113677 -125168812 - MIR SINE MIR -73 189 123 204 321 19 0 chr12 19113836 19113889 -125168600 + L2 LINE L2 3149 3202 -70 312 287 40 67 chr12 19114131 19114281 -125168208 + L2 LINE L2 3168 3313 0 298 245 160 0 chr12 19114404 19114498 -125167991 - MIR SINE MIR -100 162 54 297 326 43 0 chr12 19115219 19115360 -125167129 + MER103 DNA DNA 3 149 -17 23 54 0 0 chr12 19115726 19115763 -125166726 + AT_rich Low_complexity Low_complexity 1 37 0 357 314 27 53 chr12 19116456 19116644 -125165845 - L1ME3A LINE L1 -9 6161 5979 253 171 237 0 chr12 19116656 19116732 -125165757 - L1ME3A LINE L1 -233 5937 5844 23 54 0 0 chr12 19116744 19116781 -125165708 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr12 19117013 19117035 -125165454 + AT_rich Low_complexity Low_complexity 1 22 0 273 75 0 0 chr12 19117612 19117652 -125164837 + (TC)n Simple_repeat Simple_repeat 2 41 0 262 307 144 20 chr12 19118175 19118328 -125164161 - LTR67 LTR ERVL -357 200 29 26 50 0 0 chr12 19118782 19118822 -125163667 + AT_rich Low_complexity Low_complexity 1 40 0 180 310 75 80 chr12 19119901 19120114 -125162375 + MIR SINE MIR 45 256 -6 1518 99 0 5 chr12 19123149 19123374 -125159115 - AluSg/x SINE Alu 0 306 83 22 35 0 0 chr12 19124501 19124530 -125157959 + AT_rich Low_complexity Low_complexity 1 29 0 631 254 14 39 chr12 19125085 19125137 -125157352 + L1MC1 LINE L1 3045 3097 -4190 2516 62 3 0 chr12 19125137 19125446 -125157043 + AluY SINE Alu 1 310 -1 631 254 14 39 chr12 19125446 19125676 -125156813 + L1MC1 LINE L1 3097 3320 -3967 928 212 111 9 chr12 19125686 19125912 -125156577 + L1M3e LINE L1 2 250 -6780 2967 256 70 47 chr12 19125930 19127816 -125154673 + L1M3e LINE L1 926 2826 -4281 2025 243 12 36 chr12 19127821 19128315 -125154174 - MER70B LTR ERVL -2 576 95 578 165 50 25 chr12 19128317 19128438 -125154051 - MER70B LTR ERVL -416 162 39 1020 254 88 53 chr12 19128474 19129410 -125153079 + L1MA9 LINE L1 2955 3942 -3623 * 3945 199 30 26 chr12 19129398 19131140 -125151349 + L1MA9 LINE L1 5895 7726 -5 9210 242 25 28 chr12 19131153 19134160 -125148329 + L1MC1 LINE L1 3277 6292 -1001 2246 98 0 10 chr12 19134160 19134456 -125148033 + AluSc SINE Alu 1 293 -16 9210 242 25 28 chr12 19134456 19135026 -125147463 + L1MC1 LINE L1 6292 6840 -453 2112 127 0 0 chr12 19135026 19135317 -125147172 + AluSx SINE Alu 1 291 -21 9210 242 25 28 chr12 19135317 19135757 -125146732 + L1MC1 LINE L1 6840 7280 -13 628 234 1 1 chr12 19135797 19135941 -125146548 + L1MB5 LINE L1 5979 6119 -55 299 250 118 19 chr12 19136064 19136202 -125146287 - MIR SINE MIR -47 215 56 2549 269 72 22 chr12 19137576 19138920 -125143569 - L1MEc LINE L1 -3933 2463 1053 911 231 20 12 chr12 19138987 19139238 -125143251 - L1MEc LINE L1 -5471 925 673 21 57 0 0 chr12 19139293 19139328 -125143161 + AT_rich Low_complexity Low_complexity 1 35 0 199 260 0 20 chr12 19139668 19139718 -125142771 - L3 LINE CR1 -5 1572 1524 420 190 95 26 chr12 19139768 19139884 -125142605 - L1M4 LINE L1 -1947 4199 4076 1603 170 3 17 chr12 19139898 19140192 -125142297 - L1PB3 LINE L1 0 6154 5865 1382 275 135 21 chr12 19140239 19140818 -125141671 - L1MEc LINE L1 -5743 653 9 * 3664 243 47 19 chr12 19140813 19141010 -125141479 - L1MD2 LINE L1 0 6359 6169 348 43 0 0 chr12 19141010 19141056 -125141433 + (TG)n Simple_repeat Simple_repeat 1 46 0 3664 243 47 19 chr12 19141056 19141105 -125141384 - L1MD2 LINE L1 -190 6169 6123 2078 138 3 0 chr12 19141105 19141410 -125141079 + AluSx SINE Alu 1 306 -6 3664 243 47 19 chr12 19141410 19142952 -125139537 - L1MD2 LINE L1 -236 6123 4518 21 36 0 0 chr12 19142989 19143017 -125139472 + AT_rich Low_complexity Low_complexity 1 28 0 5745 249 40 22 chr12 19144358 19145900 -125136589 + L1PA15 LINE L1 1286 2887 -3910 1839 158 3 16 chr12 19145900 19146216 -125136273 + AluSx SINE Alu 1 312 0 5745 249 40 22 chr12 19146216 19147150 -125135339 + L1PA15 LINE L1 2887 3803 -2994 8264 224 12 3 chr12 19147152 19148607 -125133882 + L1PA15 LINE L1 3909 5350 -1466 210 91 0 0 chr12 19148607 19148640 -125133849 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 8264 224 12 3 chr12 19148640 19150079 -125132410 + L1PA15 LINE L1 5350 6816 0 26 50 0 0 chr12 19150184 19150224 -125132265 + AT_rich Low_complexity Low_complexity 1 40 0 400 275 40 73 chr12 19150389 19150636 -125131853 - L1ME3A LINE L1 -265 5905 5675 4428 190 33 6 chr12 19150710 19151566 -125130923 + Tigger2 DNA MER2_type 1666 2544 -174 880 158 0 0 chr12 19151566 19151693 -125130796 + AluSx SINE Alu 1 127 -185 42231 53 8 4 chr12 19151715 19157830 -125124659 + L1PA4 LINE L1 2 6142 -13 1156 149 0 0 chr12 19157835 19158009 -125124480 + AluSx SINE Alu 127 300 -10 207 48 48 24 chr12 19158009 19158051 -125124438 + (TA)n Simple_repeat Simple_repeat 1 43 0 784 202 66 27 chr12 19158063 19158246 -125124243 + Tigger2 DNA MER2_type 2528 2717 -1 441 0 0 0 chr12 19158247 19158296 -125124193 + (TG)n Simple_repeat Simple_repeat 2 50 0 338 303 29 63 chr12 19158296 19158471 -125124018 - L1MCa LINE L1 -4849 1577 1409 374 312 85 62 chr12 19158555 19159036 -125123453 - L1MCa LINE L1 -5116 1491 1000 301 196 31 0 chr12 19159248 19159345 -125123144 - L1MA3 LINE L1 0 6305 6206 365 147 29 15 chr12 19159345 19159407 -125123082 + L1MA4A LINE L1 5876 5938 -365 21 36 0 0 chr12 19159552 19159580 -125122909 + AT_rich Low_complexity Low_complexity 1 28 0 459 287 77 24 chr12 19160935 19161144 -125121345 - MIR SINE MIR -11 251 32 34654 95 16 9 chr12 19161394 19168562 -125113927 + HERV9 LTR ERV1 504 8399 0 4766 127 60 19 chr12 19168568 19169358 -125113131 + LTR12 LTR ERV1 5 826 0 202 200 0 0 chr12 19169367 19169407 -125113082 + GA-rich Low_complexity Low_complexity 1 40 0 276 250 29 29 chr12 19169649 19169753 -125112736 + A-rich Low_complexity Low_complexity 3 106 0 557 130 32 32 chr12 19171634 19171757 -125110732 + L1MB1 LINE L1 6044 6166 -2 24 32 0 0 chr12 19171844 19171875 -125110614 + AT_rich Low_complexity Low_complexity 1 31 0 964 55 16 0 chr12 19171880 19172008 -125110481 - L1PA14 LINE L1 -17 6144 6015 323 318 0 9 chr12 19172008 19172118 -125110371 + CT-rich Low_complexity Low_complexity 4 112 0 24 77 0 0 chr12 19172444 19172496 -125109993 + AT_rich Low_complexity Low_complexity 1 52 0 384 312 123 26 chr12 19172506 19172660 -125109829 - MIR SINE MIR -88 174 6 23 54 0 0 chr12 19172661 19172698 -125109791 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr12 19172713 19172739 -125109750 + AT_rich Low_complexity Low_complexity 1 26 0 228 242 30 15 chr12 19174038 19174104 -125108385 + L1ME LINE L1 5518 5584 -537 2315 70 23 0 chr12 19174104 19174405 -125108084 + AluY SINE Alu 1 308 -3 22 56 0 0 chr12 19174671 19174707 -125107782 + AT_rich Low_complexity Low_complexity 1 36 0 1568 220 0 0 chr12 19175652 19175952 -125106537 - AluJb SINE Alu -10 302 3 285 272 12 0 chr12 19176044 19176125 -125106364 - L1ME LINE L1 -522 5599 5518 181 227 45 0 chr12 19176940 19176984 -125105505 - L2 LINE L2 -9 3304 3259 2111 126 0 10 chr12 19177532 19177833 -125104656 + AluSx SINE Alu 3 300 -12 439 149 16 3 chr12 19178009 19178099 -125104390 - MSTC LTR MaLR 0 428 338 4357 232 32 19 chr12 19178122 19179616 -125102873 - L1PA13 LINE L1 -4068 2729 1208 2697 180 50 21 chr12 19179654 19180272 -125102217 + L1MA7 LINE L1 5646 6281 -10 204 125 0 0 chr12 19180422 19180454 -125102035 + (TATATG)n Simple_repeat Simple_repeat 4 35 0 309 326 0 0 chr12 19180455 19180544 -125101945 + L1MC4 LINE L1 6615 6703 -1339 207 100 0 0 chr12 19180795 19180825 -125101664 + (TG)n Simple_repeat Simple_repeat 2 31 0 1882 243 24 21 chr12 19180825 19181285 -125101204 - L1M3b LINE L1 -5817 464 4 448 315 87 34 chr12 19181288 19181609 -125100880 + L2 LINE L2 2192 2529 -785 323 268 129 57 chr12 19181689 19181898 -125100591 + MIR SINE MIR 36 259 -3 322 378 67 22 chr12 19181921 19182191 -125100298 + L2 LINE L2 2580 2861 -453 210 71 0 0 chr12 19183082 19183110 -125099379 + (GA)n Simple_repeat Simple_repeat 1 28 0 2289 118 0 0 chr12 19183544 19183850 -125098639 + AluSc SINE Alu 1 306 -3 349 298 137 32 chr12 19184520 19184644 -125097845 - L2 LINE L2 -10 3262 3126 782 327 38 49 chr12 19184662 19185111 -125097378 + L1MB1 LINE L1 1356 1799 -5697 2700 265 70 20 chr12 19185647 19187245 -125095244 + L1MB1 LINE L1 2012 3519 -4046 * 8719 201 34 63 chr12 19187235 19189086 -125093403 + L1MB1 LINE L1 4279 6181 -1406 1709 166 19 22 chr12 19189086 19189399 -125093090 + AluSx SINE Alu 1 312 0 8719 201 34 63 chr12 19189399 19190490 -125091999 + L1MB1 LINE L1 6181 7112 -475 6350 121 36 22 chr12 19190490 19191546 -125090943 - MER11C LTR ERVK 0 1071 1 8719 201 34 63 chr12 19191546 19191991 -125090498 + L1MB1 LINE L1 7112 7568 -19 262 268 46 108 chr12 19192375 19192569 -125089920 - L2 LINE L2 0 3313 3132 1574 278 90 8 chr12 19192569 19193102 -125089387 + L1MEc LINE L1 134 710 -5686 670 314 36 61 chr12 19193107 19193470 -125089019 + L2 LINE L2 2943 3296 -17 342 235 26 43 chr12 19193728 19193843 -125088646 - L2 LINE L2 -1 3312 3200 461 255 38 0 chr12 19193968 19194120 -125088369 + L1ME2 LINE L1 6003 6161 -1 21 0 0 0 chr12 19194188 19194209 -125088280 + AT_rich Low_complexity Low_complexity 1 21 0 1967 97 81 88 chr12 19194591 19194985 -125087504 + LTR14B LTR ERVK 7 608 0 424 39 0 0 chr12 19194985 19195036 -125087453 + HERVK14 LTR ERVK 1 51 -5894 416 250 17 9 chr12 19195036 19195152 -125087337 + L1MB1 LINE L1 5844 5960 -229 348 203 25 0 chr12 19195154 19195233 -125087256 + L1M3 LINE L1 5613 5693 -641 4655 66 55 6 chr12 19195233 19195887 -125086602 + HERVK14 LTR ERVK 100 785 -5160 8401 74 29 5 chr12 19195923 19197085 -125085404 + HERV17 LTR ERV1 824 2013 -6613 * 9986 74 14 1 chr12 19197071 19198380 -125084109 + HERV17 LTR ERV1 2430 3754 -4872 1335 0 0 0 chr12 19198359 19198508 -125083981 + HERV17 LTR ERV1 5405 5553 -3073 * 305 122 0 0 chr12 19198507 19198556 -125083933 + HERV17 LTR ERV1 433 481 -8145 * 3254 62 33 17 chr12 19198556 19199198 -125083291 + HERVK14 LTR ERVK 5038 5759 -186 304 212 0 17 chr12 19199198 19199273 -125083216 + MER41C LTR ERV1 1 63 -491 500 92 153 20 chr12 19199273 19199371 -125083118 + HERVK14 LTR ERVK 5835 5945 0 249 85 21 43 chr12 19199374 19199421 -125083068 + LTR14B LTR ERVK 1 46 -562 * 1817 132 103 27 chr12 19199409 19199779 -125082710 + LTR14B LTR ERVK 211 608 0 22 0 0 0 chr12 19200045 19200067 -125082422 + AT_rich Low_complexity Low_complexity 1 22 0 3550 162 35 56 chr12 19200159 19200961 -125081528 - LTR1 LTR ERV1 0 785 1 21 0 0 0 chr12 19202667 19202688 -125079801 + AT_rich Low_complexity Low_complexity 1 21 0 325 283 94 29 chr12 19203109 19203247 -125079242 - L3b LINE CR1 -135 1448 1302 581 311 183 35 chr12 19205568 19206048 -125076441 - MLT1H1 LTR MaLR -2 593 1 509 367 33 11 chr12 19207051 19207476 -125075013 + ERVL LTR ERVL 3833 4314 -1211 24 0 0 0 chr12 19209435 19209459 -125073030 + AT_rich Low_complexity Low_complexity 1 24 0 2651 83 2 28 chr12 19209717 19209774 -125072715 + L1PA13 LINE L1 5773 5830 -333 2195 122 0 0 chr12 19209774 19210078 -125072411 + AluY SINE Alu 1 304 -7 2651 83 2 28 chr12 19210078 19210415 -125072074 + L1PA13 LINE L1 5830 6157 -6 239 269 8 108 chr12 19211388 19211518 -125070971 - MIR3 SINE MIR -2 206 90 2249 61 0 67 chr12 19213760 19214088 -125068401 - AluY SINE Alu -5 306 1 721 316 20 0 chr12 19214109 19214362 -125068127 + L2 LINE L2 1442 1699 -1615 2316 283 53 30 chr12 19214375 19215203 -125067286 + L2 LINE L2 1923 2769 -545 7268 216 21 13 chr12 19216030 19218416 -125064073 - L1MA9 LINE L1 -374 6959 4555 766 244 0 12 chr12 19218417 19218585 -125063904 + LTR28 LTR ERV1 1 166 -854 505 251 78 33 chr12 19218632 19218923 -125063566 + MER61D LTR ERV1 344 1297 -11 2490 248 59 8 chr12 19219070 19219933 -125062556 - L1MA9 LINE L1 -2610 4557 3651 1374 224 28 41 chr12 19219923 19220328 -125062161 + L1M2c LINE L1 2217 2618 -4171 * 1913 129 39 4 chr12 19220390 19220670 -125061819 + AluSx SINE Alu 1 290 -22 380 270 25 31 chr12 19220711 19220870 -125061619 - L1MA9 LINE L1 -3552 3615 3458 26 64 0 0 chr12 19220874 19220921 -125061568 + AT_rich Low_complexity Low_complexity 1 47 0 340 139 22 50 chr12 19220924 19221104 -125061385 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 485 94 54 13 chr12 19221075 19221224 -125061265 + (TA)n Simple_repeat Simple_repeat 1 155 0 444 194 38 14 chr12 19221224 19221577 -125060912 + (TATAA)n Simple_repeat Simple_repeat 1 361 0 936 264 30 0 chr12 19221577 19221842 -125060647 - L1MA9 LINE L1 -3693 3474 3202 9374 234 57 25 chr12 19221887 19224791 -125057698 - L1MA9 LINE L1 -4161 3007 1 21 0 0 0 chr12 19224838 19224859 -125057630 + AT_rich Low_complexity Low_complexity 1 21 0 535 338 0 0 chr12 19225296 19225447 -125057042 + MIR SINE MIR 7 157 -105 388 312 34 99 chr12 19225443 19225527 -125056962 - MIR SINE MIR 0 262 174 * 300 27 0 0 chr12 19225527 19225564 -125056925 + (CA)n Simple_repeat Simple_repeat 2 38 0 388 312 34 99 chr12 19225564 19225742 -125056747 - MIR SINE MIR -88 174 17 225 375 107 26 chr12 19225846 19226193 -125056296 + L2 LINE L2 2384 2758 -556 311 370 55 0 chr12 19226315 19226461 -125056028 + MIR3 SINE MIR 49 202 -6 261 0 0 0 chr12 19226680 19226709 -125055780 + (TA)n Simple_repeat Simple_repeat 1 29 0 2008 198 57 29 chr12 19227510 19227999 -125054490 + MLT1D LTR MaLR 1 503 -2 295 241 101 0 chr12 19228541 19228620 -125053869 + L2 LINE L2 3227 3313 0 22 0 0 0 chr12 19228632 19228654 -125053835 + AT_rich Low_complexity Low_complexity 1 22 0 2047 126 3 3 chr12 19232519 19232829 -125049660 - AluSx SINE Alu -2 310 1 21 82 0 0 chr12 19232882 19232931 -125049558 + AT_rich Low_complexity Low_complexity 1 49 0 230 304 59 29 chr12 19233340 19233442 -125049047 + L2 LINE L2 3208 3312 -1 191 254 109 0 chr12 19235078 19235133 -125047356 - MIR3 SINE MIR -8 200 140 321 246 108 109 chr12 19235202 19235514 -125046975 - L2 LINE L2 -529 2785 2403 2218 82 26 10 chr12 19235514 19235820 -125046669 + AluY SINE Alu 1 311 0 321 246 108 109 chr12 19235820 19235896 -125046593 - L2 LINE L2 -911 2403 2328 1151 317 53 9 chr12 19235897 19236348 -125046141 - L2 LINE L2 -1110 2204 1734 1197 207 91 12 chr12 19236360 19236679 -125045810 - L1MC3 LINE L1 -1 7784 7441 341 274 0 11 chr12 19236666 19236761 -125045728 - L1M4 LINE L1 -2442 3704 3611 * 25 0 0 0 chr12 19236767 19236792 -125045697 + AT_rich Low_complexity Low_complexity 1 25 0 226 290 16 0 chr12 19237037 19237099 -125045390 + MLT1H LTR MaLR 1 63 -486 770 307 4 8 chr12 19237101 19237339 -125045150 - L1MCb LINE L1 -5586 321 85 270 268 41 31 chr12 19237347 19237444 -125045045 - L1MCb LINE L1 -6310 116 19 679 307 107 46 chr12 19237449 19237646 -125044843 - L2 LINE L2 -1609 1705 1521 1462 209 67 34 chr12 19237646 19238092 -125044397 + MLT1C LTR MaLR 5 465 -2 679 307 107 46 chr12 19238092 19238373 -125044116 - L2 LINE L2 -1793 1521 1198 1148 273 133 28 chr12 19239464 19239893 -125042596 - MLT1H LTR MaLR -9 540 67 5516 181 48 47 chr12 19239893 19240269 -125042220 + L1M4c LINE L1 403 777 -5607 1994 146 10 0 chr12 19240269 19240578 -125041911 - AluSx SINE Alu 0 312 1 5516 181 48 47 chr12 19240578 19241610 -125040879 + L1M4c LINE L1 777 1812 -4572 533 249 22 52 chr12 19241610 19241814 -125040675 - MLT1D LTR MaLR -84 421 199 259 250 31 78 chr12 19242000 19242128 -125040361 - L1MA9 LINE L1 -287 6025 5904 24 53 0 0 chr12 19242251 19242289 -125040200 + AT_rich Low_complexity Low_complexity 1 38 0 424 251 30 68 chr12 19242305 19242540 -125039949 + L1ME LINE L1 5322 5547 -617 216 0 0 0 chr12 19243537 19243561 -125038928 + (T)n Simple_repeat Simple_repeat 1 24 0 29 0 0 0 chr12 19243706 19243735 -125038754 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 19244295 19244327 -125038162 + AT_rich Low_complexity Low_complexity 1 32 0 971 271 182 64 chr12 19344911 19345645 -124936844 - L2 LINE L2 -5 3308 2488 1080 218 40 40 chr12 19345646 19345894 -124936595 - MLT1E LTR MaLR 0 593 346 536 295 77 10 chr12 19345924 19346131 -124936358 - MLT1E LTR MaLR -371 222 2 2100 185 0 8 chr12 19346321 19346689 -124935800 - MLT1A1 LTR MaLR 0 365 1 583 209 67 8 chr12 19347011 19347145 -124935344 - LTR9 LTR ERV1 0 612 471 2334 185 23 70 chr12 19347148 19347704 -124934785 - LTR9 LTR ERV1 -82 530 1 1424 220 59 93 chr12 19349308 19349911 -124932578 + MLT1E2 LTR MaLR 2 613 -41 2007 111 0 11 chr12 19350594 19350873 -124931616 - AluSx SINE Alu -36 276 1 380 340 39 31 chr12 19350920 19351102 -124931387 + MIR SINE MIR 2 181 -81 2205 88 0 7 chr12 19351102 19351414 -124931075 + AluSg SINE Alu 3 312 0 380 340 39 31 chr12 19351414 19351432 -124931057 + MIR SINE MIR 181 197 -65 225 0 0 0 chr12 19351432 19351457 -124931032 + (TA)n Simple_repeat Simple_repeat 1 25 0 380 340 39 31 chr12 19351457 19351513 -124930976 + MIR SINE MIR 197 262 0 592 323 78 9 chr12 19351598 19351815 -124930674 + MIR SINE MIR 3 234 -28 588 263 48 88 chr12 19352065 19352442 -124930047 - L1ME4a LINE L1 -295 5826 5470 1246 198 34 0 chr12 19352456 19352693 -124929796 + MLT1A1 LTR MaLR 121 365 0 1398 165 106 30 chr12 19352693 19352996 -124929493 - MLT1D LTR MaLR -179 326 1 320 267 9 19 chr12 19354495 19354600 -124927889 - MIR3 SINE MIR -1 207 104 1255 192 54 11 chr12 19354993 19355253 -124927236 - MLT1A1 LTR MaLR -94 271 1 312 290 91 5 chr12 19355473 19355659 -124926830 - L1ME3A LINE L1 -219 5951 5750 329 290 80 0 chr12 19355659 19355797 -124926692 - L1MEd LINE L1 -3987 2553 2405 352 275 86 42 chr12 19356295 19356855 -124925634 - L1MEd LINE L1 -4602 1992 1380 180 217 0 0 chr12 19356855 19356901 -124925588 + (TG)n Simple_repeat Simple_repeat 2 47 0 389 250 38 85 chr12 19356935 19357171 -124925318 - L1MEd LINE L1 -5171 1359 1135 383 243 63 9 chr12 19358890 19359001 -124923488 + MER51D LTR ERV1 464 580 -77 22 0 0 0 chr12 19359603 19359625 -124922864 + AT_rich Low_complexity Low_complexity 1 22 0 243 304 101 7 chr12 19361272 19361410 -124921079 - MER103 DNA DNA -7 159 9 27 73 0 0 chr12 19361662 19361717 -124920772 + AT_rich Low_complexity Low_complexity 1 55 0 200 338 14 0 chr12 19362020 19362091 -124920398 + MIR SINE MIR 76 147 -115 204 165 25 152 chr12 19363235 19363314 -124919175 + L2 LINE L2 3156 3224 -89 2024 146 0 0 chr12 19363507 19363808 -124918681 - AluSx SINE Alu -11 301 1 23 33 0 0 chr12 19364542 19364572 -124917917 + AT_rich Low_complexity Low_complexity 1 30 0 367 354 99 14 chr12 19364892 19365115 -124917374 - MIR SINE MIR 0 262 21 324 0 0 0 chr12 19366182 19366218 -124916271 + (CA)n Simple_repeat Simple_repeat 2 37 0 204 292 175 25 chr12 19366741 19366861 -124915628 - L2 LINE L2 -1 3271 3134 428 366 130 27 chr12 19367047 19367708 -124914781 - L2 LINE L2 -341 2973 2245 1788 180 40 19 chr12 19367709 19368081 -124914408 - MLT1B LTR MaLR 0 390 11 196 329 43 0 chr12 19368114 19368184 -124914305 - MIR SINE MIR -109 153 81 634 116 32 0 chr12 19369504 19369599 -124912890 + AluJ/FLAM SINE Alu 1 98 -214 24 0 0 0 chr12 19369642 19369666 -124912823 + GC_rich Low_complexity Low_complexity 1 24 0 359 261 25 17 chr12 19369693 19369812 -124912677 + (TATG)n Simple_repeat Simple_repeat 3 122 0 593 202 17 6 chr12 19369816 19369994 -124912495 + (TA)n Simple_repeat Simple_repeat 1 180 0 470 306 91 39 chr12 19370187 19370419 -124912070 + MIR SINE MIR 4 247 -15 199 289 33 11 chr12 19370431 19370521 -124911968 - MIR3 SINE MIR -5 203 112 2488 183 35 27 chr12 19371339 19371750 -124910739 + MER66B LTR ERV1 1 418 -68 2347 99 0 10 chr12 19371750 19372062 -124910427 - AluSc SINE Alu 0 309 1 2488 183 35 27 chr12 19372062 19372132 -124910357 + MER66B LTR ERV1 418 486 0 575 261 119 20 chr12 19374315 19374568 -124907921 + MARNA DNA Mariner 146 423 -163 293 242 0 0 chr12 19374622 19374684 -124907805 - MLT1J2 LTR MaLR -28 422 361 457 238 64 91 chr12 19374748 19375027 -124907462 - MLT1I LTR MaLR -121 288 51 225 378 134 18 chr12 19376687 19376962 -124905527 + L3b LINE CR1 1276 1582 -1 21 36 0 0 chr12 19377348 19377376 -124905113 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr12 19377924 19377963 -124904526 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 322 141 17 chr12 19378594 19378771 -124903718 - MIR SINE MIR -44 218 20 1921 153 19 16 chr12 19381215 19381581 -124900908 - L1MA2 LINE L1 -155 6149 5783 202 273 0 45 chr12 19383777 19383843 -124898646 - L2 LINE L2 -28 3285 3223 237 98 0 0 chr12 19385214 19385255 -124897234 + (TG)n Simple_repeat Simple_repeat 2 42 0 203 351 59 17 chr12 19386457 19386629 -124895860 - MIR3 SINE MIR -33 229 1 21 36 0 0 chr12 19386647 19386675 -124895814 + AT_rich Low_complexity Low_complexity 1 28 0 209 348 22 39 chr12 19390542 19390723 -124891766 + MER5B DNA MER1_type 1 178 0 492 214 0 0 chr12 19390771 19390869 -124891620 + MER5A DNA MER1_type 9 106 -83 2905 156 57 31 chr12 19390926 19391712 -124890777 + pTR5 LTR ERV1 743 2021 -417 376 238 10 0 chr12 19391713 19391814 -124890675 + LTR30 LTR ERV1 541 642 -80 2175 107 3 0 chr12 19391814 19392133 -124890356 + pTR5 LTR ERV1 66 385 -2053 1789 151 20 29 chr12 19392134 19392478 -124890011 - THE1C LTR MaLR -31 344 4 600 279 35 23 chr12 19394954 19395126 -124887363 + MER91A DNA MER1_type 3 176 -20 403 270 56 0 chr12 19395128 19395217 -124887272 - MER81 DNA DNA -20 94 1 239 348 22 0 chr12 19395428 19395520 -124886969 - MIR SINE MIR -79 183 90 678 276 186 58 chr12 19396919 19397727 -124884762 - L2 LINE L2 -6 3307 2376 2199 117 3 0 chr12 19398060 19398368 -124884121 - AluSx SINE Alu -3 309 1 234 385 0 0 chr12 19398368 19398446 -124884043 - L2 LINE L2 -1 3271 3194 871 79 87 0 chr12 19399594 19399721 -124882768 + MER85 DNA T2_type 1 138 -1 21 0 0 0 chr12 19399982 19400003 -124882486 + AT_rich Low_complexity Low_complexity 1 21 0 2098 112 23 10 chr12 19400005 19400308 -124882181 - AluSx SINE Alu -3 309 3 1672 169 17 7 chr12 19400938 19401228 -124881261 - AluJb SINE Alu -19 293 1 197 65 32 0 chr12 19401650 19401681 -124880808 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 12196 186 41 23 chr12 19401699 19405336 -124877153 - L1MA7 LINE L1 -2 6493 2791 7122 188 39 11 chr12 19405326 19406931 -124875558 - L1 LINE L1 -1603 5962 4313 * 2056 254 46 60 chr12 19406934 19408115 -124874374 - L1 LINE L1 -4415 3150 2175 19047 142 36 39 chr12 19408301 19410885 -124871604 - L1P3 LINE L1 -1599 4862 2191 567 71 0 41 chr12 19410885 19410983 -124871506 + SVA Other Other 1293 1386 0 19047 142 36 39 chr12 19410983 19411906 -124870583 - L1P3 LINE L1 -4270 2191 1267 6782 159 14 29 chr12 19411924 19413165 -124869324 - L1P3 LINE L1 -4743 1132 3 2805 286 58 34 chr12 19413172 19415438 -124867051 - L1MA7 LINE L1 -4244 2107 1 329 264 174 52 chr12 19415480 19415516 -124866973 + MIR SINE MIR 83 113 -149 2286 104 3 7 chr12 19415516 19415824 -124866665 - AluSq SINE Alu -6 307 1 329 264 174 52 chr12 19415824 19415942 -124866547 + MIR SINE MIR 113 256 -6 2055 128 0 7 chr12 19416066 19416362 -124866127 + AluSq SINE Alu 1 294 -19 895 215 23 56 chr12 19416520 19416734 -124865755 - MER63A DNA MER1_type 0 210 4 479 270 13 63 chr12 19419849 19420008 -124862481 - MIR SINE MIR -49 213 63 760 330 143 30 chr12 19420959 19421548 -124860941 + L2 LINE L2 1223 1953 -1361 1969 129 161 11 chr12 19421548 19421920 -124860569 + MSTA LTR MaLR 1 428 0 760 330 143 30 chr12 19421920 19422242 -124860247 + L2 LINE L2 1953 2237 -1077 4816 206 50 16 chr12 19422254 19423665 -124858824 - L1MD1 LINE L1 -1 6635 5156 1756 241 83 25 chr12 19423660 19424141 -124858348 - L1MD1 LINE L1 -6016 524 16 * 548 338 151 21 chr12 19424141 19424564 -124857925 + L2 LINE L2 2230 2707 -607 2113 144 0 0 chr12 19424895 19425207 -124857282 - AluSx SINE Alu 0 312 1 23 33 0 0 chr12 19426344 19426374 -124856115 + AT_rich Low_complexity Low_complexity 1 30 0 2213 33 7 4 chr12 19426804 19427075 -124855414 + L1PA4 LINE L1 5881 6152 -3 722 288 35 31 chr12 19427251 19427507 -124854982 - MIR SINE MIR 0 262 6 255 204 255 20 chr12 19427541 19427639 -124854850 - MIR SINE MIR -29 233 113 189 269 39 0 chr12 19427816 19427868 -124854621 + L2 LINE L2 3219 3272 0 180 377 0 0 chr12 19429571 19429648 -124852841 - MIR SINE MIR -27 235 159 412 308 93 17 chr12 19430081 19430253 -124852236 + MIR SINE MIR 14 198 -64 341 263 0 0 chr12 19430251 19430331 -124852158 - MIR SINE MIR -16 246 167 * 207 259 17 0 chr12 19430345 19430403 -124852086 + MIR SINE MIR 203 261 -1 865 222 35 5 chr12 19430429 19430627 -124851862 - MER3 DNA MER1_type -3 206 3 6390 81 3 0 chr12 19433364 19434753 -124847736 - L1PA14 LINE L1 -4 6157 4748 330 310 83 99 chr12 19434770 19435225 -124847264 - L2 LINE L2 0 3272 2825 239 271 0 0 chr12 19435737 19435796 -124846693 + L2 LINE L2 2187 2245 -1069 383 322 92 58 chr12 19435897 19436223 -124846266 + L2 LINE L2 2626 2962 -352 283 309 31 10 chr12 19436878 19436975 -124845514 - MIR SINE MIR -108 154 56 185 200 0 60 chr12 19437971 19438021 -124844468 + MIR SINE MIR 216 262 0 328 285 75 11 chr12 19438384 19438521 -124843968 - MIR3 SINE MIR -5 203 60 221 0 35 0 chr12 19438603 19438632 -124843857 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 506 274 24 18 chr12 19440339 19440507 -124841982 - MIR SINE MIR 0 262 94 294 313 53 27 chr12 19446776 19446926 -124835563 + MIR3 SINE MIR 18 171 -37 252 288 96 0 chr12 19446969 19447042 -124835447 + L2 LINE L2 3194 3273 -40 216 303 61 0 chr12 19447541 19447607 -124834882 + L2 LINE L2 3200 3269 -3 232 234 0 85 chr12 19447996 19448090 -124834399 + L1M4 LINE L1 3892 3977 -2169 583 263 108 20 chr12 19448351 19448602 -124833887 + L1M4 LINE L1 3871 4143 -2003 834 307 18 26 chr12 19448810 19449191 -124833298 + L1M4 LINE L1 4490 4867 -1279 271 192 0 0 chr12 19449324 19449376 -124833113 - L2 LINE L2 -1 3312 3261 751 286 147 39 chr12 19449456 19449943 -124832546 + L2 LINE L2 2753 3282 -31 205 250 0 0 chr12 19449954 19450006 -124832483 + (TG)n Simple_repeat Simple_repeat 1 52 0 432 0 0 0 chr12 19450735 19450783 -124831706 + (TA)n Simple_repeat Simple_repeat 1 48 0 387 0 0 0 chr12 19450782 19450825 -124831664 + (GA)n Simple_repeat Simple_repeat 2 44 0 * 1911 103 53 4 chr12 19450826 19451089 -124831400 - AluSq SINE Alu -37 276 1 610 339 44 7 chr12 19451697 19452110 -124830379 + HAL1b LINE L1 211 638 -710 859 227 0 0 chr12 19452288 19452451 -124830038 + FRAM SINE Alu 1 160 -16 21 0 0 0 chr12 19452781 19452802 -124829687 + AT_rich Low_complexity Low_complexity 1 21 0 325 301 70 19 chr12 19452816 19452972 -124829517 + L1MC4a LINE L1 5895 6058 -1750 2394 56 3 3 chr12 19453087 19453390 -124829099 - AluY SINE Alu -8 303 1 21 0 0 0 chr12 19454168 19454189 -124828300 + AT_rich Low_complexity Low_complexity 1 21 0 217 254 14 0 chr12 19454864 19454935 -124827554 + (TA)n Simple_repeat Simple_repeat 1 72 0 381 271 21 0 chr12 19456372 19456468 -124826021 + Charlie2 DNA MER1_type 228 325 -2537 916 261 95 35 chr12 19456469 19456894 -124825595 + Charlie2 DNA MER1_type 1855 2320 -542 218 81 27 0 chr12 19456894 19456931 -124825558 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 916 261 95 35 chr12 19456931 19457041 -124825448 + Charlie2 DNA MER1_type 2320 2422 -440 1637 186 7 11 chr12 19458078 19458357 -124824132 + AluJo SINE Alu 5 282 -30 191 304 128 20 chr12 19458393 19458495 -124823994 - L2 LINE L2 -1 3312 3200 182 325 39 0 chr12 19458584 19458661 -124823828 - L2 LINE L2 -225 3047 2968 1940 207 99 18 chr12 19458732 19459186 -124823303 - MLT1D LTR MaLR -13 492 2 1609 176 92 46 chr12 19459305 19459343 -124823146 - MLT2D LTR ERVL -4 410 375 345 24 0 0 chr12 19459343 19459385 -124823104 + (TG)n Simple_repeat Simple_repeat 1 42 0 1609 176 92 46 chr12 19459385 19459738 -124822751 - MLT2D LTR ERVL -39 375 1 615 266 113 81 chr12 19459950 19460390 -124822099 + MLT1G LTR MaLR 10 503 -46 229 307 0 85 chr12 19460399 19460417 -124822072 - L1MC/D LINE L1 -512 5832 5815 967 281 100 5 chr12 19460417 19461034 -124821455 - L1ME3A LINE L1 -343 5810 5106 254 108 0 0 chr12 19461119 19461156 -124821333 + MER54A LTR ERVL 102 138 -763 2140 108 7 3 chr12 19461173 19461468 -124821021 - AluSq SINE Alu -17 296 1 2193 234 18 0 chr12 19461487 19461928 -124820561 + MER54A LTR ERVL 453 901 0 1144 284 99 20 chr12 19462063 19463020 -124819469 - L1MEd LINE L1 -3193 2936 1937 301 225 34 28 chr12 19463239 19463417 -124819072 + (TA)n Simple_repeat Simple_repeat 2 180 0 648 304 36 18 chr12 19463482 19464083 -124818406 - L1MEd LINE L1 -4862 1257 700 562 272 27 22 chr12 19466170 19466354 -124816135 + MER5A DNA MER1_type 2 186 -3 317 336 27 20 chr12 19466561 19466707 -124815782 - L2 LINE L2 -183 3089 2943 205 147 0 0 chr12 19468896 19468930 -124813559 - L2 LINE L2 -2 3311 3278 236 316 64 59 chr12 19468947 19469134 -124813355 + MER5A DNA MER1_type 1 188 -1 31 26 0 0 chr12 19469997 19470035 -124812454 + AT_rich Low_complexity Low_complexity 1 38 0 204 143 0 0 chr12 19470484 19470526 -124811963 + (TC)n Simple_repeat Simple_repeat 1 42 0 2427 79 0 0 chr12 19470812 19471104 -124811385 + AluSc SINE Alu 2 293 -16 1555 276 76 11 chr12 19472515 19473055 -124809434 - L2 LINE L2 -865 2449 1875 17916 208 54 20 chr12 19473064 19474978 -124807511 + L1PA14 LINE L1 6 1855 -5744 2099 93 43 20 chr12 19474978 19475279 -124807210 - AluY SINE Alu -3 308 1 17916 208 54 20 chr12 19475279 19478703 -124803786 + L1PA14 LINE L1 1855 6167 -1432 291 28 0 0 chr12 19478703 19478739 -124803750 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 17916 208 54 20 chr12 19478739 19480101 -124802388 + L1PA14 LINE L1 6167 7482 -117 261 102 85 68 chr12 19480099 19480158 -124802331 + L1PA15 LINE L1 6104 6163 -2 * 23 54 0 0 chr12 19480197 19480234 -124802255 + AT_rich Low_complexity Low_complexity 1 37 0 455 246 152 11 chr12 19480241 19480432 -124802057 - L2 LINE L2 -1428 1886 1669 468 354 13 18 chr12 19480439 19480665 -124801824 - L2 LINE L2 -2708 606 382 280 309 32 16 chr12 19481137 19481263 -124801226 - MER20B DNA MER1_type -613 170 43 344 182 68 0 chr12 19481277 19481365 -124801124 - MER53 DNA DNA 0 189 96 341 211 53 0 chr12 19481430 19481506 -124800983 - MER91C DNA MER1_type -60 80 1 402 343 108 66 chr12 19482567 19483840 -124798649 - L2 LINE L2 -456 2858 1533 1666 176 14 100 chr12 19483840 19484261 -124798228 - MLT1B LTR MaLR -5 385 1 191 297 192 11 chr12 19484315 19484497 -124797992 - L2 LINE L2 -1855 1459 1245 1529 250 77 52 chr12 19484896 19485091 -124797398 + L1MDa LINE L1 1564 1753 -4968 2077 116 3 49 chr12 19485091 19485418 -124797071 + AluSp SINE Alu 1 312 -1 1529 250 77 52 chr12 19485418 19486112 -124796377 + L1MDa LINE L1 1753 2512 -4209 1181 73 0 11 chr12 19486230 19486409 -124796080 + (TTTCC)n Simple_repeat Simple_repeat 2 178 0 2077 119 3 0 chr12 19486425 19486719 -124795770 - AluSp SINE Alu -17 296 2 2933 169 94 13 chr12 19486728 19487537 -124794952 + MER41-int LTR ERV1 528 1489 -4457 1687 84 5 0 chr12 19487639 19487854 -124794635 - AluSp SINE Alu -97 216 1 1302 213 115 25 chr12 19487867 19488224 -124794265 + MLT1D LTR MaLR 117 505 0 531 234 101 43 chr12 19488266 19488475 -124794014 + L1MEc LINE L1 4 224 -6172 608 199 144 30 chr12 19488871 19489072 -124793417 + MER2 DNA MER2_type 122 345 0 2037 257 36 16 chr12 19489128 19489814 -124792675 - L1M4 LINE L1 -2211 3935 3236 801 261 13 4 chr12 19489862 19490100 -124792389 - L1M4 LINE L1 -3316 2830 2591 482 233 29 0 chr12 19490307 19490410 -124792079 + MER5A DNA MER1_type 84 189 0 474 221 39 94 chr12 19490879 19491060 -124791429 + L1ME LINE L1 5512 5682 -439 3361 49 11 16 chr12 19491547 19491998 -124790491 + L1PA8 LINE L1 5724 6172 0 267 292 108 15 chr12 19492002 19492132 -124790357 - L2 LINE L2 -389 2925 2784 801 302 59 59 chr12 19492206 19492765 -124789724 - L2 LINE L2 -509 2805 2247 2252 79 3 10 chr12 19492866 19493170 -124789319 - MLT2A1 LTR ERVL -142 302 1 180 200 0 0 chr12 19493519 19493564 -124788925 + (CAT)n Simple_repeat Simple_repeat 2 46 0 969 238 111 49 chr12 19493564 19493908 -124788581 + MLT1A1 LTR MaLR 1 365 0 345 319 72 0 chr12 19493924 19494062 -124788427 - MIR SINE MIR -40 222 75 316 352 38 19 chr12 19494108 19494267 -124788222 - MIR3 SINE MIR -24 184 23 917 230 0 0 chr12 19496196 19496374 -124786115 + MER45A DNA AcHobo 1 178 0 403 278 154 12 chr12 19496452 19496621 -124785868 + L2 LINE L2 3119 3311 -2 21 0 0 0 chr12 19497011 19497032 -124785457 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 19497943 19497972 -124784517 + AT_rich Low_complexity Low_complexity 1 29 0 10874 25 1 0 chr12 19498133 19500180 -124782309 + L1PA3 LINE L1 4099 6147 -8 227 29 57 0 chr12 19500198 19500233 -124782256 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 518 325 94 32 chr12 19500626 19501253 -124781236 + L1 LINE L1 2676 3412 -2734 515 256 82 54 chr12 19501365 19501822 -124780667 + L1 LINE L1 3520 3983 -2163 * 1885 119 3 22 chr12 19501813 19502125 -124780364 + L1MA5A LINE L1 5813 6118 -179 492 167 0 0 chr12 19502129 19502213 -124780276 - L1P LINE L1 -1561 4585 4502 * 592 164 79 29 chr12 19502212 19502352 -124780137 + L1 LINE L1 4598 4744 -1402 2198 223 86 12 chr12 19502357 19503029 -124779460 + L1PBa LINE L1 321 1042 -5821 8453 181 31 2 chr12 19503037 19506144 -124776345 + L1PBa LINE L1 1094 4440 -2422 21 0 0 0 chr12 19506150 19506171 -124776318 + AT_rich Low_complexity Low_complexity 1 21 0 503 281 152 23 chr12 19506350 19506567 -124775922 + MIR SINE MIR 5 249 -13 23 33 0 0 chr12 19507396 19507426 -124775063 + AT_rich Low_complexity Low_complexity 1 30 0 7468 25 2 10 chr12 19507835 19509244 -124773245 + L1PA4 LINE L1 4750 6152 -3 321 301 219 15 chr12 19509530 19509726 -124772763 - MIR SINE MIR -17 245 10 782 322 23 29 chr12 19511350 19511698 -124770791 + MARNA DNA Mariner 60 405 -181 2744 279 52 23 chr12 19511882 19512913 -124769576 + L2 LINE L2 2068 3119 -194 283 275 0 25 chr12 19512925 19513005 -124769484 + L2 LINE L2 3236 3313 0 281 291 55 36 chr12 19514051 19514161 -124768328 - MER5A DNA MER1_type -15 174 63 336 309 69 29 chr12 19515196 19515400 -124767089 + L2 LINE L2 2169 2380 -934 180 0 0 0 chr12 19515481 19515501 -124766988 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 2285 141 3 5 chr12 19515502 19515856 -124766633 - L1PB1 LINE L1 -5 6146 5792 393 22 0 0 chr12 19515856 19515902 -124766587 + (TG)n Simple_repeat Simple_repeat 2 47 0 2285 141 3 5 chr12 19515902 19515917 -124766572 - L1PB1 LINE L1 -359 5792 5778 1216 104 38 0 chr12 19515971 19516154 -124766335 - L1PB1 LINE L1 -361 5790 5601 21 0 0 0 chr12 19517433 19517454 -124765035 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 19518507 19518544 -124763945 + AT_rich Low_complexity Low_complexity 1 37 0 1231 271 136 44 chr12 19518723 19519926 -124762563 + L1ME LINE L1 239 1528 -4552 1776 272 58 14 chr12 19519953 19520267 -124762222 - L1M4 LINE L1 -3057 3089 2790 2178 67 60 0 chr12 19520267 19520549 -124761940 - AluY SINE Alu -12 299 1 1776 272 58 14 chr12 19520549 19521019 -124761470 - L1M4 LINE L1 -3356 2790 2233 468 111 0 0 chr12 19521026 19521098 -124761391 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 405 319 69 81 chr12 19521141 19521461 -124761028 - L3 LINE CR1 -638 939 624 235 217 65 0 chr12 19522044 19522136 -124760353 + (TA)n Simple_repeat Simple_repeat 1 98 0 14864 223 33 16 chr12 19522454 19528060 -124754429 - L1MA7 LINE L1 -11 7699 2023 382 173 37 25 chr12 19528060 19528141 -124754348 - L1MA7 LINE L1 -5873 1613 1532 597 214 43 0 chr12 19529341 19529458 -124753031 + FLAM_A SINE Alu 2 123 -10 25 31 0 0 chr12 19529465 19529497 -124752992 + AT_rich Low_complexity Low_complexity 1 32 0 185 309 73 0 chr12 19530523 19530578 -124751911 - L2 LINE L2 0 3313 3255 1682 167 73 3 chr12 19530654 19530942 -124751547 + AluSx SINE Alu 1 308 -4 284 313 18 9 chr12 19531771 19531883 -124750606 + Tigger1 DNA MER2_type 1040 1152 -1266 239 307 121 18 chr12 19532318 19532484 -124750005 - L2 LINE L2 -911 2403 2221 985 212 13 44 chr12 19532484 19532710 -124749779 + MER20 DNA MER1_type 1 219 0 447 212 126 13 chr12 19532795 19532946 -124749543 - MIR SINE MIR 0 262 95 258 94 94 62 chr12 19532946 19533010 -124749479 - MLT2B1 LTR ERVL 0 520 455 1645 200 105 64 chr12 19533051 19533507 -124748982 - MLT2B1 LTR ERVL -44 476 2 27054 165 49 48 chr12 19533508 19536751 -124745738 - ERVL-B1 LTR ERVL -7 5757 2506 2048 91 11 4 chr12 19536751 19537052 -124745437 - AluSp SINE Alu 0 307 5 27054 165 49 48 chr12 19537052 19539173 -124743316 - ERVL-B1 LTR ERVL -3258 2506 388 496 170 0 0 chr12 19539178 19539272 -124743217 - MLT2B2 LTR ERVL -421 94 1 225 383 21 0 chr12 19539272 19539366 -124743123 - MIR SINE MIR -163 99 4 189 0 0 0 chr12 19539479 19539500 -124742989 + (A)n Simple_repeat Simple_repeat 1 21 0 24 53 0 0 chr12 19539677 19539715 -124742774 + AT_rich Low_complexity Low_complexity 1 38 0 43 56 0 0 chr12 19540466 19540537 -124741952 + AT_rich Low_complexity Low_complexity 1 71 0 2072 131 3 10 chr12 19542271 19542576 -124739913 - AluSq SINE Alu -10 303 1 1077 248 3 10 chr12 19542657 19542956 -124739533 - L1M4 LINE L1 -1014 5132 4836 390 21 0 0 chr12 19543314 19543361 -124739128 + (TG)n Simple_repeat Simple_repeat 2 48 0 188 224 41 61 chr12 19545109 19545158 -124737331 + L2 LINE L2 3214 3261 -11 201 275 159 43 chr12 19545170 19545308 -124737181 - MIR SINE MIR -108 154 1 396 252 79 0 chr12 19546179 19546306 -124736183 - MIR SINE MIR -13 249 113 288 385 82 0 chr12 19546450 19546632 -124735857 - L2 LINE L2 -1899 1415 1219 353 238 171 38 chr12 19547462 19547672 -124734817 + L1ME4a LINE L1 5879 6116 -5 953 196 28 14 chr12 19547786 19548000 -124734489 + L1PA16 LINE L1 5950 6166 0 258 200 0 0 chr12 19548050 19548105 -124734384 - L1MA1 LINE L1 0 6302 6248 27 29 0 0 chr12 19548809 19548843 -124733646 + AT_rich Low_complexity Low_complexity 1 34 0 3563 239 42 157 chr12 19549567 19550824 -124731665 + L2 LINE L2 1200 2600 -713 279 0 0 0 chr12 19550824 19550855 -124731634 + (TC)n Simple_repeat Simple_repeat 2 32 0 3563 239 42 157 chr12 19550855 19550872 -124731617 + L2 LINE L2 2600 2617 -696 213 65 0 0 chr12 19550872 19550903 -124731586 + (TG)n Simple_repeat Simple_repeat 2 32 0 3563 239 42 157 chr12 19550903 19551173 -124731316 + L2 LINE L2 2617 2916 -397 441 0 0 0 chr12 19551173 19551222 -124731267 + (TG)n Simple_repeat Simple_repeat 2 50 0 3563 239 42 157 chr12 19551222 19551986 -124730503 + L2 LINE L2 2916 3240 -73 238 333 0 0 chr12 19551996 19552053 -124730436 + Zaphod DNA AcHobo 11 67 -3964 1218 320 75 33 chr12 19552078 19552550 -124729939 + MER115 DNA AcHobo 144 641 -52 2017 189 26 75 chr12 19552550 19553041 -124729448 + MLT1C LTR MaLR 1 467 0 1218 320 75 33 chr12 19553041 19553086 -124729403 + MER115 DNA AcHobo 641 683 -10 204 40 0 0 chr12 19553402 19553427 -124729062 + (GA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr12 19554258 19554286 -124728203 + AT_rich Low_complexity Low_complexity 1 28 0 3762 175 50 25 chr12 19555751 19556534 -124725955 + L1MC3 LINE L1 6884 7685 -100 5239 235 51 37 chr12 19556543 19556611 -124725878 + L1M4 LINE L1 2 68 -6578 1588 168 3 54 chr12 19556611 19556759 -124725730 + AluJo SINE Alu 2 156 -161 2066 110 34 0 chr12 19556759 19557051 -124725438 + AluSg1 SINE Alu 1 302 -7 1588 168 3 54 chr12 19557051 19557233 -124725256 + AluJo SINE Alu 156 317 0 5239 235 51 37 chr12 19557233 19559065 -124723424 + L1M4 LINE L1 68 1919 -4727 22 56 0 0 chr12 19559065 19559101 -124723388 + AT_rich Low_complexity Low_complexity 1 36 0 392 313 33 0 chr12 19559671 19559821 -124722668 - MIR SINE MIR -38 224 70 903 264 81 3 chr12 19559835 19560130 -124722359 - L1MC4 LINE L1 -141 7901 7584 1026 63 0 14 chr12 19560133 19560275 -124722214 - L1PA4 LINE L1 0 6155 6016 600 263 35 6 chr12 19560275 19560446 -124722043 + L1M4 LINE L1 1907 2082 -4564 7281 178 83 14 chr12 19560447 19561996 -124720493 + L1MB3 LINE L1 4 1658 -4726 4119 111 57 71 chr12 19561994 19562784 -124719705 + L1PA15 LINE L1 5374 6152 -13 * 2776 156 152 29 chr12 19562822 19563532 -124718957 + L1PA15-16 LINE L1 1645 2426 -3958 1450 212 17 3 chr12 19563520 19563822 -124718667 + L1MB3 LINE L1 4205 4510 -1872 * 1281 180 14 0 chr12 19563830 19564047 -124718442 - MER2 DNA MER2_type -124 221 2 3751 180 13 31 chr12 19564051 19565073 -124717416 + L1MB3 LINE L1 5216 6219 -200 4780 35 0 0 chr12 19565073 19565637 -124716852 + L1PA3 LINE L1 5591 6154 -1 23 0 0 0 chr12 19565637 19565660 -124716829 + AT_rich Low_complexity Low_complexity 1 23 0 1049 174 14 14 chr12 19565666 19565884 -124716605 + L1MB3 LINE L1 6202 6419 0 23 54 0 0 chr12 19565941 19565978 -124716511 + AT_rich Low_complexity Low_complexity 1 37 0 1085 103 0 81 chr12 19565978 19566124 -124716365 + AluSp SINE Alu 1 132 -181 2126 106 3 7 chr12 19566124 19566417 -124716072 + AluSc SINE Alu 3 294 -15 1085 103 0 81 chr12 19566417 19566444 -124716045 + AluSp SINE Alu 132 160 -153 1951 232 77 7 chr12 19566445 19567278 -124715211 + L1M4c LINE L1 2080 2976 -3406 411 208 40 0 chr12 19567279 19567380 -124715109 + L1MC3 LINE L1 7679 7783 -2 275 347 148 14 chr12 19568097 19568313 -124714176 - MIR SINE MIR -10 252 8 553 235 81 81 chr12 19569499 19569759 -124712730 - MIR SINE MIR 0 262 3 219 267 156 22 chr12 19569791 19569881 -124712608 - MIR SINE MIR -25 237 136 1653 152 49 85 chr12 19569922 19570131 -124712358 - MLT1A2 LTR MaLR 0 374 184 2134 95 3 43 chr12 19570131 19570435 -124712054 - AluSg SINE Alu -18 292 1 1653 152 49 85 chr12 19570435 19570613 -124711876 - MLT1A2 LTR MaLR -190 184 1 195 129 0 0 chr12 19570749 19570780 -124711709 + (CA)n Simple_repeat Simple_repeat 2 32 0 256 216 114 34 chr12 19570846 19570934 -124711555 - MIR3 SINE MIR -23 185 91 403 286 53 41 chr12 19570951 19571122 -124711367 + MIR SINE MIR 79 251 -11 213 121 0 0 chr12 19571125 19571158 -124711331 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1949 123 13 38 chr12 19571368 19571684 -124710805 + AluSg SINE Alu 1 308 -2 534 258 108 0 chr12 19571978 19572145 -124710344 - MER3 DNA MER1_type -8 201 17 1747 194 34 8 chr12 19572219 19572575 -124709914 - MLT1A1 LTR MaLR 0 365 1 561 284 63 29 chr12 19573154 19573393 -124709096 - LTR33 LTR ERVL -274 247 1 1628 230 148 27 chr12 19574032 19574559 -124707930 - MLT1E LTR MaLR -2 591 1 346 294 96 11 chr12 19574786 19574963 -124707526 + L2 LINE L2 3122 3313 0 508 288 69 42 chr12 19575094 19575474 -124707015 + MLT1H1 LTR MaLR 1 364 -178 613 245 0 20 chr12 19575487 19575638 -124706851 + MER3 DNA MER1_type 30 130 -79 3335 173 25 9 chr12 19575834 19576487 -124706002 + L1PB4 LINE L1 5490 6152 -4 392 343 30 34 chr12 19576586 19576819 -124705670 + MLT1K LTR MaLR 345 576 -12 681 251 30 6 chr12 19577872 19578039 -124704450 - MER5A DNA MER1_type 0 189 19 557 265 26 20 chr12 19578065 19578216 -124704273 + MER5B DNA MER1_type 27 178 0 245 254 16 0 chr12 19578353 19578416 -124704073 + (TG)n Simple_repeat Simple_repeat 1 64 0 2816 230 82 20 chr12 19578817 19579975 -124702514 - L1ME1 LINE L1 -5 6161 4934 2534 214 54 9 chr12 19581138 19581694 -124700795 - MER90 LTR ERV1 -11 603 23 233 365 0 0 chr12 19581720 19581794 -124700695 - L2 LINE L2 -194 3078 3005 21 0 0 0 chr12 19582125 19582146 -124700343 + AT_rich Low_complexity Low_complexity 1 21 0 630 221 147 30 chr12 19584902 19585133 -124697356 - MIR SINE MIR 0 262 5 1737 154 81 31 chr12 19585218 19585575 -124696914 + THE1C LTR MaLR 1 375 0 333 68 0 0 chr12 19586298 19586342 -124696147 + (CA)n Simple_repeat Simple_repeat 1 44 0 210 233 17 33 chr12 19587285 19587345 -124695144 + L2 LINE L2 3214 3272 0 27 62 0 0 chr12 19588142 19588190 -124694299 + AT_rich Low_complexity Low_complexity 1 48 0 185 174 0 22 chr12 19589418 19589464 -124693025 + GA-rich Low_complexity Low_complexity 3 47 0 1557 70 74 5 chr12 19589810 19590025 -124692464 - MER30 DNA MER1_type 0 230 1 227 331 113 73 chr12 19590594 19590672 -124691817 - L2 LINE L2 0 3272 3199 1965 141 0 3 chr12 19590672 19590992 -124691497 - AluSq SINE Alu 0 319 1 227 331 113 73 chr12 19590992 19591063 -124691426 - L2 LINE L2 -73 3199 3116 402 361 65 31 chr12 19591439 19591794 -124690695 - L2 LINE L2 -616 2698 2332 250 330 33 22 chr12 19595063 19595245 -124687244 + HAL1b LINE L1 407 590 -758 266 0 0 29 chr12 19596790 19596825 -124685664 + (TA)n Simple_repeat Simple_repeat 1 34 0 323 261 94 39 chr12 19597499 19597679 -124684810 - L3 LINE CR1 -277 1300 1111 272 308 125 8 chr12 19597876 19597996 -124684493 + MIR3 SINE MIR 74 207 -1 250 239 14 14 chr12 19598592 19598663 -124683826 + MER112 DNA MER1_type 9 79 -181 720 103 0 0 chr12 19598712 19598819 -124683670 + (CTATT)n Simple_repeat Simple_repeat 4 110 0 1724 113 49 0 chr12 19599110 19599394 -124683095 - L1MA3 LINE L1 -1 6304 6007 477 286 138 61 chr12 19600898 19601275 -124681214 + MLT1K LTR MaLR 162 567 -21 2165 120 0 7 chr12 19601454 19601754 -124680735 - AluSx SINE Alu -14 298 1 423 0 0 0 chr12 19602093 19602140 -124680349 + (TCC)n Simple_repeat Simple_repeat 2 48 0 240 341 87 24 chr12 19603150 19603276 -124679213 + MER5A DNA MER1_type 37 170 -19 1212 68 0 0 chr12 19603305 19603451 -124679038 - AluSg/x SINE Alu -10 302 157 408 315 119 31 chr12 19603509 19603852 -124678637 - Tigger8 DNA MER2_type -35 631 258 367 218 0 13 chr12 19603852 19603930 -124678559 + LTR24B LTR ERV1 1 77 -499 544 315 47 36 chr12 19603992 19604351 -124678138 + LTR24B LTR ERV1 207 569 -7 364 330 98 40 chr12 19604503 19604814 -124677675 - L2 LINE L2 -1211 2103 1757 1986 124 0 13 chr12 19604814 19605113 -124677376 - AluSq SINE Alu -18 295 1 364 330 98 40 chr12 19605113 19605249 -124677240 - L2 LINE L2 -1557 1757 1630 21 0 0 0 chr12 19605446 19605467 -124677022 + AT_rich Low_complexity Low_complexity 1 21 0 2079 129 0 0 chr12 19606070 19606357 -124676132 + AluSx SINE Alu 1 287 -25 313 252 93 66 chr12 19606372 19606434 -124676055 + L1MC4a LINE L1 5766 5825 -1983 2236 99 3 19 chr12 19606434 19606746 -124675743 + AluSx SINE Alu 4 310 -2 313 252 93 66 chr12 19606746 19606834 -124675655 + L1MC4a LINE L1 5825 5920 -1888 1666 234 80 28 chr12 19607281 19607746 -124674743 - MLT1D LTR MaLR -12 493 5 5546 192 21 35 chr12 19608370 19610087 -124672402 - L1MA9 LINE L1 -38 6274 4600 532 281 0 0 chr12 19610087 19610215 -124672274 + FLAM_C SINE Alu 2 129 -4 5546 192 21 35 chr12 19610215 19610671 -124671818 - L1MA9 LINE L1 -1712 4600 4139 2046 279 100 19 chr12 19610772 19611219 -124671270 - L2 LINE L2 -301 3012 2495 6641 36 0 0 chr12 19611219 19612047 -124670442 + L1PA4 LINE L1 5341 6168 0 2046 279 100 19 chr12 19612047 19612340 -124670149 - L2 LINE L2 -818 2495 2227 21 57 0 0 chr12 19612450 19612485 -124670004 + AT_rich Low_complexity Low_complexity 1 35 0 247 222 0 0 chr12 19613183 19613228 -124669261 + MER112 DNA MER1_type 203 247 -13 1029 179 42 24 chr12 19615160 19615372 -124667117 + MER20 DNA MER1_type 4 219 0 318 50 0 0 chr12 19615671 19615711 -124666778 + (GA)n Simple_repeat Simple_repeat 1 40 0 1767 60 5 0 chr12 19615886 19616104 -124666385 - AluY SINE Alu -10 301 83 428 246 37 52 chr12 19616114 19616286 -124666203 - FLAM_A SINE Alu 0 171 2 188 307 40 0 chr12 19617385 19617460 -124665029 - MIR SINE MIR -104 158 81 21 104 0 0 chr12 19617670 19617747 -124664742 + AT_rich Low_complexity Low_complexity 1 77 0 1095 314 103 35 chr12 19617915 19618286 -124664203 + L2 LINE L2 2155 2499 -815 1917 172 52 75 chr12 19618286 19618711 -124663778 + MER47B DNA MER2_type 4 418 0 1095 314 103 35 chr12 19618711 19619087 -124663402 + L2 LINE L2 2499 2953 -361 24 53 0 0 chr12 19619878 19619916 -124662573 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 19620120 19620141 -124662348 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 19620322 19620345 -124662144 + AT_rich Low_complexity Low_complexity 1 23 0 1925 251 39 20 chr12 19620363 19620938 -124661551 - L1ME3A LINE L1 -23 6147 5564 368 221 229 16 chr12 19620965 19621087 -124661402 + MIR SINE MIR 21 168 -94 429 281 165 0 chr12 19621186 19621428 -124661061 + L1ME4a LINE L1 5616 5897 -224 197 254 73 0 chr12 19622099 19622154 -124660335 + MER5C DNA MER1_type 31 89 -235 403 311 145 31 chr12 19622333 19622884 -124659605 + L2 LINE L2 2701 3309 -4 229 295 67 0 chr12 19623201 19623306 -124659183 + Tigger8 DNA MER2_type 379 490 -176 229 259 0 0 chr12 19625868 19625922 -124656567 - MIR SINE MIR -132 130 77 244 319 94 51 chr12 19626276 19626414 -124656075 + L2 LINE L2 2946 3089 -183 187 286 89 0 chr12 19626498 19626554 -124655935 + L2 LINE L2 3212 3272 -41 228 313 134 9 chr12 19626917 19627029 -124655460 + L2 LINE L2 3186 3311 -2 1532 194 7 14 chr12 19627550 19627834 -124654655 + AluJo SINE Alu 1 282 -30 27 29 0 0 chr12 19627834 19627868 -124654621 + AT_rich Low_complexity Low_complexity 1 34 0 302 358 102 47 chr12 19628045 19628660 -124653829 - L2 LINE L2 -406 2908 2260 205 330 156 27 chr12 19628660 19628884 -124653605 + MIR SINE MIR 1 253 -9 569 305 37 5 chr12 19630455 19630645 -124651844 - MIR SINE MIR -11 251 56 29 0 0 0 chr12 19631036 19631065 -124651424 + AT_rich Low_complexity Low_complexity 1 29 0 1637 252 51 43 chr12 19631629 19632137 -124650352 + LTR40a LTR ERVL 1 512 -7 9364 191 38 30 chr12 19632479 19632659 -124649830 - L1MA10 LINE L1 -1 6333 6156 1630 173 4 4 chr12 19632659 19632936 -124649553 - AluJb SINE Alu -33 279 3 9364 191 38 30 chr12 19632936 19634823 -124647666 - L1MA10 LINE L1 -178 6156 4287 264 30 0 0 chr12 19634823 19634856 -124647633 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2090 108 0 0 chr12 19634860 19635137 -124647352 - AluSx SINE Alu -35 277 1 9364 191 38 30 chr12 19635137 19635911 -124646578 - L1MA10 LINE L1 -2049 4285 3454 660 217 0 0 chr12 19635911 19636026 -124646463 - FLAM_C SINE Alu -18 115 1 9364 191 38 30 chr12 19636026 19636385 -124646104 - L1MA10 LINE L1 -2880 3454 3100 34 84 0 0 chr12 19636913 19636996 -124645493 + AT_rich Low_complexity Low_complexity 1 83 0 202 333 101 14 chr12 19637175 19637313 -124645176 + MIR SINE MIR 100 249 -13 357 62 0 0 chr12 19639955 19640003 -124642486 + (TG)n Simple_repeat Simple_repeat 1 48 0 252 0 0 0 chr12 19640002 19640030 -124642459 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 191 289 184 9 chr12 19640372 19640486 -124642003 - MIR SINE MIR -10 252 119 1792 210 22 0 chr12 19640519 19640876 -124641613 - MLT1A1 LTR MaLR 0 365 1 434 217 126 42 chr12 19641346 19641489 -124641000 - MER5A DNA MER1_type -28 161 7 777 276 68 19 chr12 19641992 19642362 -124640127 - L1ME4a LINE L1 -216 5905 5518 333 103 26 39 chr12 19642580 19642658 -124639831 + CT-rich Low_complexity Low_complexity 1 77 0 260 210 12 0 chr12 19642657 19642738 -124639751 + (CA)n Simple_repeat Simple_repeat 1 82 0 * 215 298 184 35 chr12 19642789 19642903 -124639586 + L2 LINE L2 3183 3313 0 192 355 154 5 chr12 19643873 19644093 -124638396 + L2 LINE L2 1317 1569 -1745 1337 169 13 17 chr12 19644137 19644409 -124638080 - AluJb SINE Alu 0 324 54 377 283 9 9 chr12 19644420 19644526 -124637963 - MIR SINE MIR -155 107 2 1677 169 34 9 chr12 19644801 19645150 -124637339 - L1MA10 LINE L1 -1 6333 5976 3935 111 31 5 chr12 19645367 19645972 -124636517 + L1PA15 LINE L1 5543 6163 -2 2299 109 0 0 chr12 19646427 19646739 -124635750 - AluSx SINE Alu 0 312 1 812 160 0 0 chr12 19646857 19646988 -124635501 - FLAM_C SINE Alu -2 131 1 343 306 21 49 chr12 19647078 19647222 -124635267 + MIR SINE MIR 7 146 -116 208 338 15 0 chr12 19647282 19647350 -124635139 + L2 LINE L2 3204 3272 0 327 276 230 11 chr12 19647685 19647859 -124634630 - LTR33 LTR ERVL -6 515 304 506 280 85 20 chr12 19647935 19648135 -124634354 - LTR33 LTR ERVL -306 215 3 532 282 107 32 chr12 19649748 19649965 -124632524 + L1ME LINE L1 5268 5467 -703 303 28 0 0 chr12 19649965 19650001 -124632488 + (TG)n Simple_repeat Simple_repeat 2 37 0 532 282 107 32 chr12 19650001 19650184 -124632305 + L1ME LINE L1 5467 5707 -463 200 313 7 33 chr12 19650478 19650628 -124631861 + A-rich Low_complexity Low_complexity 3 148 0 300 370 82 27 chr12 19652872 19653091 -124629398 - L2 LINE L2 0 3272 3042 405 304 0 9 chr12 19653204 19653319 -124629170 + LTR16A LTR ERVL 212 325 -125 741 163 98 49 chr12 19653327 19653511 -124628978 - MER58C DNA MER1_type -1 214 22 355 300 10 0 chr12 19653532 19653632 -124628857 + LTR16A LTR ERVL 338 438 -12 560 195 102 68 chr12 19653694 19653971 -124628518 + MER92B LTR ERV1 10 355 -199 416 91 91 0 chr12 19653971 19654035 -124628454 + MER41B LTR ERV1 1 70 -565 498 244 96 67 chr12 19654035 19654170 -124628319 - LTR28 LTR ERV1 0 1020 688 1489 225 67 114 chr12 19654235 19655017 -124627472 - LTR1B LTR ERV1 -81 745 1 3967 90 32 12 chr12 19655017 19655575 -124626914 + MER41B LTR ERV1 67 635 0 485 216 28 128 chr12 19655584 19655802 -124626687 + MER92C LTR ERV1 357 552 -2 3201 218 155 28 chr12 19656185 19657601 -124624888 - Charlie2a DNA MER1_type -38 2824 1228 867 236 73 9 chr12 19657644 19657971 -124624518 - Charlie2a DNA MER1_type -1767 1095 748 8068 146 47 1 chr12 19658015 19658149 -124624340 + Tigger1 DNA MER2_type 85 211 -2207 1922 122 7 46 chr12 19658149 19658453 -124624036 - AluSx SINE Alu -19 293 2 8068 146 47 1 chr12 19658453 19659659 -124622830 + Tigger1 DNA MER2_type 211 1487 -931 956 152 0 0 chr12 19659659 19659804 -124622685 - AluJb SINE Alu -167 145 1 34 0 0 0 chr12 19659995 19660029 -124622460 + AT_rich Low_complexity Low_complexity 1 34 0 2050 165 31 0 chr12 19660047 19660399 -124622090 - MER47A DNA MER2_type -1 365 3 22 70 0 0 chr12 19660457 19660500 -124621989 + AT_rich Low_complexity Low_complexity 1 43 0 30417 110 25 56 chr12 19661150 19667496 -124614993 + L1PA7 LINE L1 12 6151 -3 312 291 102 16 chr12 19668354 19668481 -124614008 - MIR3 SINE MIR -41 167 30 310 327 78 14 chr12 19668535 19668752 -124613737 - L3 LINE CR1 -346 1231 1001 237 65 0 0 chr12 19669378 19669409 -124613080 + (A)n Simple_repeat Simple_repeat 1 31 0 320 286 34 41 chr12 19669885 19670032 -124612457 - L1M4 LINE L1 -1445 4701 4556 461 283 146 31 chr12 19670038 19670264 -124612225 - MIR SINE MIR -8 254 3 382 281 208 22 chr12 19670749 19671062 -124611427 - L1M4 LINE L1 -2149 3997 3627 445 326 78 20 chr12 19671210 19671455 -124611034 - LTR33 LTR ERVL -157 364 106 1959 188 9 28 chr12 19672129 19672457 -124610032 - L1 LINE L1 -1128 5018 4698 191 88 29 0 chr12 19672457 19672491 -124609998 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1959 188 9 28 chr12 19672491 19672598 -124609891 - L1 LINE L1 -1448 4698 4591 2599 153 23 14 chr12 19672600 19673639 -124608850 + L1PA15 LINE L1 5030 6162 -3 24 32 0 0 chr12 19673791 19673822 -124608667 + AT_rich Low_complexity Low_complexity 1 31 0 760 304 45 13 chr12 19673967 19674348 -124608141 - L1ME3A LINE L1 -225 5945 5553 366 326 93 19 chr12 19674381 19674651 -124607838 - L1ME3A LINE L1 -3380 2766 2477 945 282 36 4 chr12 19675161 19675409 -124607080 - MIR SINE MIR 0 262 7 32 91 0 0 chr12 19675434 19675522 -124606967 + AT_rich Low_complexity Low_complexity 1 88 0 687 308 96 27 chr12 19675537 19675829 -124606660 + L2 LINE L2 3001 3312 -1 26 0 0 0 chr12 19676384 19676410 -124606079 + AT_rich Low_complexity Low_complexity 1 26 0 374 88 18 0 chr12 19676696 19676753 -124605736 - MLT1D LTR MaLR -1 504 447 7236 183 17 14 chr12 19676760 19678058 -124604431 + L1M1 LINE L1 15 1316 -6249 * 9502 115 12 68 chr12 19678055 19679773 -124602716 + L1PA8A LINE L1 2525 4146 -2000 2102 83 16 0 chr12 19679771 19680084 -124602405 - L1M1 LINE L1 -4822 2743 2426 * 7742 122 7 5 chr12 19680084 19682043 -124600446 + L1PA8A LINE L1 4169 6129 -2 7875 155 12 59 chr12 19682055 19683178 -124599311 + L1M1 LINE L1 2419 3593 -3972 3264 91 5 223 chr12 19683178 19684027 -124598462 + MER4A LTR ERV1 1 664 0 7875 155 12 59 chr12 19684027 19684694 -124597795 + L1M1 LINE L1 3593 4290 -3275 480 99 0 0 chr12 19684694 19684765 -124597724 + (TG)n Simple_repeat Simple_repeat 2 72 0 842 139 0 0 chr12 19684765 19684887 -124597602 - AluJb SINE Alu -190 122 1 7875 155 12 59 chr12 19684887 19685631 -124596858 + L1M1 LINE L1 4288 4938 -2627 44510 38 0 1 chr12 19685633 19691793 -124590696 + L1PA3 LINE L1 1 6152 -3 4500 170 23 0 chr12 19691783 19692607 -124589882 + L1M1 LINE L1 4891 5733 -1832 * 1375 161 99 0 chr12 19692608 19692851 -124589638 - MLT1D LTR MaLR -199 306 40 24 53 0 0 chr12 19693172 19693210 -124589279 + AT_rich Low_complexity Low_complexity 1 38 0 * 338 316 95 6 chr12 19693185 19693353 -124589136 + L1M4 LINE L1 2847 3029 -3117 213 65 0 0 chr12 19694055 19694086 -124588403 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 316 144 11 58 chr12 19694095 19694283 -124588206 + (TA)n Simple_repeat Simple_repeat 2 180 0 35 63 0 0 chr12 19694314 19694377 -124588112 + AT_rich Low_complexity Low_complexity 1 63 0 23 78 0 0 chr12 19694469 19694520 -124587969 + AT_rich Low_complexity Low_complexity 1 51 0 566 307 48 84 chr12 19694573 19695130 -124587359 + L1M4 LINE L1 3803 4339 -1807 548 302 63 10 chr12 19695373 19695578 -124586911 - MIR SINE MIR -10 252 37 224 206 32 0 chr12 19696164 19696227 -124586262 + A-rich Low_complexity Low_complexity 2 66 0 22 80 0 0 chr12 19696340 19696390 -124586099 + AT_rich Low_complexity Low_complexity 1 50 0 26 74 0 0 chr12 19696480 19696534 -124585955 + AT_rich Low_complexity Low_complexity 1 54 0 189 0 0 0 chr12 19696541 19696562 -124585927 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr12 19696636 19696658 -124585831 + AT_rich Low_complexity Low_complexity 1 22 0 369 287 8 16 chr12 19696931 19697060 -124585429 - MLT1H1 LTR MaLR 0 555 428 737 315 17 8 chr12 19697076 19697311 -124585178 - MLT1H1 LTR MaLR -254 301 65 647 316 59 19 chr12 19697388 19697695 -124584794 + LTR16B LTR ERVL 129 447 -17 237 198 40 40 chr12 19697700 19697801 -124584688 + (CTATA)n Simple_repeat Simple_repeat 3 103 0 249 178 44 0 chr12 19697812 19697857 -124584632 - MLT1H1 LTR MaLR -532 58 12 1268 123 5 0 chr12 19698340 19698527 -124583962 + MLT1C LTR MaLR 1 188 -279 1574 181 4 0 chr12 19698637 19698903 -124583586 + MLT1C LTR MaLR 199 465 -2 1459 264 40 11 chr12 19700222 19700748 -124581741 - L1M4 LINE L1 -1588 4558 4018 821 275 69 59 chr12 19700757 19701064 -124581425 + L2 LINE L2 2681 3001 -312 2474 58 0 16 chr12 19701064 19701372 -124581117 - AluY SINE Alu -8 303 1 821 275 69 59 chr12 19701372 19701604 -124580885 + L2 LINE L2 3001 3229 -84 243 0 0 0 chr12 19701660 19701687 -124580802 + (TA)n Simple_repeat Simple_repeat 2 28 0 821 160 0 0 chr12 19701976 19702095 -124580394 - FLAM_C SINE Alu -24 119 1 1781 162 0 7 chr12 19702213 19702497 -124579992 - AluJo SINE Alu -30 282 1 1991 160 0 0 chr12 19703304 19703604 -124578885 + AluJb SINE Alu 1 300 -12 23 0 0 0 chr12 19704095 19704118 -124578371 + AT_rich Low_complexity Low_complexity 1 23 0 875 238 60 34 chr12 19706355 19706653 -124575836 + MER46C DNA MER2_type 18 323 -15 258 304 51 0 chr12 19706709 19706788 -124575701 + MIR SINE MIR 67 149 -113 311 293 95 34 chr12 19707609 19707756 -124574733 - MIR3 SINE MIR -12 196 41 25 31 0 0 chr12 19708135 19708167 -124574322 + AT_rich Low_complexity Low_complexity 1 32 0 2373 66 3 16 chr12 19709759 19710063 -124572426 - AluY SINE Alu -11 300 1 2265 103 3 0 chr12 19710095 19710395 -124572094 + AluSp SINE Alu 1 301 -12 815 253 134 40 chr12 19711226 19711667 -124570822 - MLT1H LTR MaLR 0 542 55 278 183 14 14 chr12 19711677 19711748 -124570741 - MLT1G LTR MaLR -9 581 511 855 360 81 29 chr12 19713131 19714120 -124568369 + ERVL LTR ERVL 4287 5326 -438 958 299 17 23 chr12 19714331 19714685 -124567804 + LTR16A LTR ERVL 7 358 -92 287 278 0 74 chr12 19714808 19714916 -124567573 - MIR SINE MIR -78 184 85 204 226 0 0 chr12 19715199 19715252 -124567237 + A-rich Low_complexity Low_complexity 1 53 0 201 369 0 0 chr12 19715424 19715489 -124567000 + GA-rich Low_complexity Low_complexity 4 68 0 24 0 0 0 chr12 19716276 19716300 -124566189 + AT_rich Low_complexity Low_complexity 1 24 0 1637 184 32 0 chr12 19718234 19718512 -124563977 + AluJb SINE Alu 2 288 -24 321 291 118 24 chr12 19718763 19718890 -124563599 - MER5A DNA MER1_type 0 189 51 387 0 0 0 chr12 19718958 19719001 -124563488 + (CA)n Simple_repeat Simple_repeat 2 44 0 241 337 0 22 chr12 19719519 19719608 -124562881 + MIR SINE MIR 20 106 -102 240 198 198 12 chr12 19719802 19719883 -124562606 + MIR SINE MIR 101 196 -66 408 88 0 0 chr12 19721103 19721160 -124561329 + (CA)n Simple_repeat Simple_repeat 2 58 0 315 238 60 0 chr12 19722046 19722130 -124560359 + MIR SINE MIR 66 154 -108 16309 139 19 37 chr12 19722135 19723532 -124558957 - Tigger4(Zombi) DNA MER2_type -5 2726 1305 651 195 9 0 chr12 19723532 19723645 -124558844 - FLAM_C SINE Alu -19 114 1 16309 139 19 37 chr12 19723645 19724495 -124557994 - Tigger4(Zombi) DNA MER2_type -1426 1305 537 2128 103 7 13 chr12 19724495 19724795 -124557694 + AluSx SINE Alu 1 298 -14 16309 139 19 37 chr12 19724795 19725321 -124557168 - Tigger4(Zombi) DNA MER2_type -2194 537 3 588 204 0 9 chr12 19725368 19725481 -124557008 + FLAM_A SINE Alu 16 127 -15 950 194 75 5 chr12 19725764 19725965 -124556524 - MER20 DNA MER1_type 0 219 5 241 227 193 23 chr12 19726181 19726269 -124556220 + MIR SINE MIR 51 153 -109 4413 197 49 28 chr12 19726409 19727731 -124554758 - L1MA10 LINE L1 -1 6333 4974 4191 137 20 9 chr12 19727740 19728424 -124554065 - Tigger3b DNA MER2_type -526 705 14 1194 240 71 4 chr12 19728463 19728970 -124553519 - L1ME LINE L1 -501 5661 5121 701 280 139 51 chr12 19728980 19729391 -124553098 + L2 LINE L2 2867 3313 0 347 324 40 4 chr12 19729516 19729741 -124552748 - L1MEd LINE L1 -4991 1128 896 210 314 0 0 chr12 19730537 19730588 -124551901 - L2 LINE L2 -6 3266 3216 25 31 0 0 chr12 19731508 19731540 -124550949 + AT_rich Low_complexity Low_complexity 1 32 0 325 300 134 42 chr12 19732087 19732370 -124550119 - L2 LINE L2 0 3313 3005 10134 146 7 10 chr12 19732654 19734348 -124548141 + L1PA11 LINE L1 3337 5025 -1121 955 148 0 0 chr12 19734349 19734511 -124547978 - L1P LINE L1 -1392 4754 4593 6530 88 7 2 chr12 19734511 19735639 -124546850 + L1PA11 LINE L1 5033 6165 -9 27 29 0 0 chr12 19735639 19735673 -124546816 + AT_rich Low_complexity Low_complexity 1 34 0 243 125 0 0 chr12 19736306 19736346 -124546143 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr12 19737336 19737357 -124545132 + AT_rich Low_complexity Low_complexity 1 21 0 235 273 26 0 chr12 19737986 19738063 -124544426 + MER116 DNA Mariner 2 80 0 1502 198 40 69 chr12 19738240 19738721 -124543768 - LTR37B LTR ERV1 -1 467 1 2137 112 0 13 chr12 19738790 19739102 -124543387 + AluSx SINE Alu 1 308 -4 14797 193 60 9 chr12 19739641 19739951 -124542538 - L1PB1 LINE L1 -8 6859 6566 486 0 0 0 chr12 19739951 19740005 -124542484 + (TA)n Simple_repeat Simple_repeat 1 54 0 414 0 0 0 chr12 19740004 19740050 -124542439 + (GA)n Simple_repeat Simple_repeat 2 47 0 * 14797 193 60 9 chr12 19740005 19741409 -124541080 - L1PB1 LINE L1 -301 6566 5235 189 0 0 0 chr12 19741409 19741430 -124541059 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 14797 193 60 9 chr12 19741430 19744666 -124537823 - L1PB1 LINE L1 -1632 5235 1486 2292 113 0 0 chr12 19744666 19744977 -124537512 + AluSq SINE Alu 1 311 -2 14797 193 60 9 chr12 19744977 19746526 -124535963 - L1PB1 LINE L1 -5381 1486 17 25 0 0 0 chr12 19746550 19746575 -124535914 + AT_rich Low_complexity Low_complexity 1 25 0 1745 169 42 6 chr12 19746727 19747058 -124535431 + MER2 DNA MER2_type 1 343 -1 1335 279 82 60 chr12 19747199 19747797 -124534692 + L3 LINE CR1 320 930 -647 433 296 25 38 chr12 19747806 19747965 -124534524 + MIR SINE MIR 1 157 -105 610 294 69 9 chr12 19748152 19748385 -124534104 - MIR SINE MIR -5 257 11 210 338 60 20 chr12 19749643 19749794 -124532695 + L2 LINE L2 1865 2021 -1293 265 338 12 0 chr12 19749870 19749950 -124532539 - L2 LINE L2 -10 3303 3223 692 240 31 31 chr12 19750002 19750194 -124532295 + MIR SINE MIR 60 251 -11 250 266 16 16 chr12 19750575 19750639 -124531850 - L2 LINE L2 -4 3309 3246 2205 128 0 0 chr12 19750745 19751110 -124531379 + AluSx SINE Alu 1 365 0 200 273 0 0 chr12 19751146 19751190 -124531299 + L2 LINE L2 3217 3260 -12 2168 236 16 7 chr12 19751584 19752102 -124530387 + L1ME1 LINE L1 5655 6333 -1 223 378 27 14 chr12 19752296 19752444 -124530045 - L2 LINE L2 -993 2321 2172 637 203 105 14 chr12 19752628 19752796 -124529693 + MER39 LTR ERV1 7 144 -509 * 921 232 34 34 chr12 19752791 19753028 -124529461 + MER39 LTR ERV1 306 542 -165 543 197 45 38 chr12 19753030 19753162 -124529327 + FLAM_A SINE Alu 1 133 0 825 149 17 72 chr12 19753191 19753372 -124529117 + MER39 LTR ERV1 537 707 0 342 0 0 0 chr12 19753565 19753603 -124528886 + (A)n Simple_repeat Simple_repeat 1 38 0 299 241 45 98 chr12 19753978 19754090 -124528399 + MER5A DNA MER1_type 63 168 -21 431 299 105 40 chr12 19754110 19754558 -124527931 + L2 LINE L2 1791 2267 -1047 427 287 62 80 chr12 19754875 19755150 -124527339 - MLT1H LTR MaLR -198 351 82 21 0 0 0 chr12 19755363 19755384 -124527105 + AT_rich Low_complexity Low_complexity 1 21 0 5608 160 23 51 chr12 19755718 19756825 -124525664 + L1MA9 LINE L1 4217 5298 -1014 903 150 0 0 chr12 19756825 19756958 -124525531 + FLAM_C SINE Alu 1 133 0 5608 160 23 51 chr12 19756958 19757370 -124525119 + L1MA9 LINE L1 5298 5720 -592 1419 159 68 50 chr12 19757370 19757530 -124524959 + L1MA9 LINE L1 5986 6142 -170 327 49 0 0 chr12 19757530 19757571 -124524918 + (CA)n Simple_repeat Simple_repeat 2 42 0 1419 159 68 50 chr12 19757571 19757731 -124524758 + L1MA9 LINE L1 6142 6312 0 2916 266 131 19 chr12 19757745 19759027 -124523462 + L2 LINE L2 1835 3270 -43 778 230 49 11 chr12 19759035 19759430 -124523059 + MER34 LTR ERV1 41 540 -2 180 0 0 0 chr12 19760721 19760741 -124521748 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 453 165 153 0 chr12 19760970 19761055 -124521434 + FLAM_A SINE Alu 9 106 -36 449 0 0 35 chr12 19761078 19761136 -124521353 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 939 285 86 29 chr12 19761876 19762944 -124519545 - L1ME LINE L1 -648 5514 4378 624 245 10 139 chr12 19762976 19763270 -124519219 + MIR SINE MIR 1 256 -6 781 269 22 16 chr12 19763275 19763457 -124519032 - MLT1I LTR MaLR -2 407 225 809 251 49 0 chr12 19763532 19763715 -124518774 - MLT1I LTR MaLR -200 209 18 35 24 0 0 chr12 19763742 19763784 -124518705 + AT_rich Low_complexity Low_complexity 1 42 0 188 345 24 24 chr12 19763892 19763976 -124518513 - MIR SINE MIR -167 95 12 270 252 17 101 chr12 19764084 19764203 -124518286 - L1ME LINE L1 -1934 4212 4104 445 246 104 30 chr12 19764225 19764667 -124517822 - L1ME LINE L1 -694 5472 4985 207 0 0 0 chr12 19764990 19765013 -124517476 + (A)n Simple_repeat Simple_repeat 1 23 0 376 258 70 31 chr12 19765391 19765519 -124516970 + MIR SINE MIR 124 256 -6 332 292 35 26 chr12 19767526 19767639 -124514850 + MIR SINE MIR 20 133 -129 368 291 99 28 chr12 19768118 19768259 -124514230 + MIR SINE MIR 56 206 -56 313 87 43 0 chr12 19768268 19768338 -124514151 - Alu SINE Alu 0 309 238 2072 138 3 0 chr12 19770470 19770767 -124511722 + AluSx SINE Alu 1 298 -14 503 48 36 12 chr12 19771400 19771484 -124511005 + (TA)n Simple_repeat Simple_repeat 2 87 0 490 245 27 34 chr12 19771585 19771732 -124510757 - L2 LINE L2 -12 3301 3156 2247 110 0 0 chr12 19772035 19772344 -124510145 + AluSg1 SINE Alu 1 309 0 317 239 120 48 chr12 19772395 19772604 -124509885 + L1MEd LINE L1 991 1214 -4905 319 142 87 16 chr12 19772604 19772731 -124509758 + (TA)n Simple_repeat Simple_repeat 2 137 0 321 71 55 98 chr12 19772733 19772916 -124509573 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 234 116 23 0 chr12 19774251 19774294 -124508195 + MADE1 DNA Mariner 37 80 0 397 272 99 49 chr12 19774701 19774905 -124507584 + MIR SINE MIR 9 237 -25 2147 143 102 2 chr12 19776409 19776802 -124505687 - MSTB1 LTR MaLR 0 432 1 21 71 0 0 chr12 19776845 19776887 -124505602 + AT_rich Low_complexity Low_complexity 1 42 0 2213 117 0 10 chr12 19777976 19778285 -124504204 - MER1B DNA MER1_type -2 337 32 2121 119 13 7 chr12 19778341 19778643 -124503846 + AluSg SINE Alu 1 304 -6 317 309 151 22 chr12 19778711 19778850 -124503639 + L2 LINE L2 3116 3272 0 1658 148 9 62 chr12 19779532 19779857 -124502632 - MLT1B LTR MaLR -4 386 79 354 111 0 0 chr12 19779860 19779914 -124502575 + U2 snRNA snRNA 4 57 -131 * 534 115 19 77 chr12 19779909 19780013 -124502476 - MLT1B LTR MaLR -292 98 1 1690 185 6 23 chr12 19781262 19781604 -124500885 - MLT1A1 LTR MaLR -27 401 5 351 0 0 0 chr12 19782041 19782080 -124500409 + (CA)n Simple_repeat Simple_repeat 2 40 0 1201 274 110 68 chr12 19783221 19783784 -124498705 + MLT2E LTR ERVL 34 620 -8 30 45 0 0 chr12 19783864 19783908 -124498581 + AT_rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr12 19784365 19784397 -124498092 + AT_rich Low_complexity Low_complexity 1 32 0 2230 318 73 28 chr12 19784416 19785593 -124496896 + ERVL LTR ERVL 802 2031 -3733 407 169 78 0 chr12 19785601 19785678 -124496811 + MSTC LTR MaLR 1 83 -345 2404 125 11 16 chr12 19787160 19787537 -124494952 + THE1C LTR MaLR 1 375 0 267 31 0 0 chr12 19787602 19787634 -124494855 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 378 16 24 chr12 19788082 19788209 -124494280 - L2 LINE L2 -9 3304 3179 264 30 0 0 chr12 19788330 19788363 -124494126 + (TG)n Simple_repeat Simple_repeat 2 34 0 866 244 92 58 chr12 19789148 19789496 -124492993 + MLT1A1 LTR MaLR 6 365 0 39 50 0 0 chr12 19790470 19790530 -124491959 + AT_rich Low_complexity Low_complexity 1 60 0 22976 127 14 12 chr12 19790682 19793283 -124489206 - L1PA8A LINE L1 -1 6445 3853 198 0 0 0 chr12 19793283 19793305 -124489184 + (TGG)n Simple_repeat Simple_repeat 1 22 0 22976 127 14 12 chr12 19793305 19797094 -124485395 - L1PA8A LINE L1 -2593 3853 4 259 170 38 28 chr12 19797560 19797666 -124484823 + (TA)n Simple_repeat Simple_repeat 2 108 0 190 306 56 28 chr12 19798997 19799105 -124483384 - L3 LINE CR1 -12 1565 1455 226 250 42 159 chr12 19799616 19799966 -124482523 + L2 LINE L2 2739 3053 -219 1771 149 29 32 chr12 19800109 19800418 -124482071 + AluJb SINE Alu 1 308 -4 650 264 82 72 chr12 19800933 19801338 -124481151 - MLT1I LTR MaLR 0 409 1 1860 174 0 13 chr12 19801755 19802065 -124480424 + AluJb SINE Alu 5 310 -2 713 239 28 0 chr12 19802714 19802856 -124479633 + FRAM SINE Alu 1 146 -30 930 182 42 118 chr12 19803154 19803537 -124478952 - MLT1A1 LTR MaLR 0 365 1 286 204 11 68 chr12 19804425 19804513 -124477976 + L2 LINE L2 3190 3272 0 509 323 95 26 chr12 19805197 19805429 -124477060 - MIR SINE MIR -14 248 1 632 298 198 32 chr12 19805911 19806441 -124476048 + L3 LINE CR1 636 1253 -324 184 327 83 60 chr12 19806585 19806753 -124475736 - L2 LINE L2 -53 3219 3048 2505 125 31 76 chr12 19806792 19807281 -124475208 - MLT1C LTR MaLR 0 467 1 371 322 88 64 chr12 19807829 19808283 -124474206 - L2 LINE L2 -342 2972 2508 215 353 8 16 chr12 19808310 19808432 -124474057 - MER5A DNA MER1_type -1 188 68 261 350 119 14 chr12 19808517 19808660 -124473829 + L3 LINE CR1 1352 1509 -68 305 284 200 19 chr12 19809185 19809340 -124473149 + MIR SINE MIR 2 184 -78 1333 217 81 21 chr12 19809833 19810215 -124472274 - MLT1C LTR MaLR -4 463 59 205 218 109 0 chr12 19810500 19810555 -124471934 + MIR SINE MIR 200 260 -2 3286 152 75 0 chr12 19810555 19811115 -124471374 - MER7C DNA MER2_type 0 602 1 670 138 17 0 chr12 19811393 19811509 -124470980 - L1M2 LINE L1 -492 5808 5691 340 325 0 0 chr12 19811695 19811809 -124470680 - L1M3b LINE L1 -5552 729 616 233 259 25 12 chr12 19811781 19811862 -124470627 - L1M3b LINE L1 -5520 761 680 * 6107 174 37 13 chr12 19811860 19814044 -124468445 + L1MA7 LINE L1 3988 6291 0 235 343 0 14 chr12 19814584 19814654 -124467835 - MIR3 SINE MIR -126 82 14 227 149 0 21 chr12 19814765 19814812 -124467677 + (TTTCC)n Simple_repeat Simple_repeat 1 46 0 484 252 116 7 chr12 19814940 19815095 -124467394 - MIR SINE MIR -70 192 21 2132 146 0 0 chr12 19815197 19815506 -124466983 - AluSx SINE Alu -3 309 1 181 169 169 84 chr12 19815861 19815932 -124466557 + L3 LINE CR1 708 784 -793 328 304 62 27 chr12 19816108 19816220 -124466269 + L2 LINE L2 3155 3270 -2 2457 196 22 0 chr12 19818037 19818482 -124464007 + MLT2B1 LTR ERVL 1 455 -65 6457 89 14 1 chr12 19818496 19819726 -124462763 + L1PA11 LINE L1 4925 6166 -8 29 78 0 0 chr12 19819726 19819790 -124462699 + AT_rich Low_complexity Low_complexity 1 64 0 578 206 14 7 chr12 19819892 19820033 -124462456 + MER104 DNA Tc2 37 178 -2 1605 180 42 52 chr12 19820162 19820563 -124461926 + MLT2C1 LTR ERVL 1 397 0 551 285 102 68 chr12 19820680 19821051 -124461438 - L1MC4a LINE L1 -1736 6072 5715 447 19 0 0 chr12 19821051 19821103 -124461386 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 551 285 102 68 chr12 19821103 19821523 -124460966 - L1MC4a LINE L1 -2093 5715 5254 506 253 99 70 chr12 19821723 19821996 -124460493 - L1MC4a LINE L1 -1194 4952 4672 281 337 49 43 chr12 19822124 19822287 -124460202 + MIR3 SINE MIR 37 200 -8 269 196 181 38 chr12 19824207 19824340 -124458149 - MIR SINE MIR -80 182 31 2836 142 33 16 chr12 19824707 19825056 -124457433 - L1PB4 LINE L1 0 6156 5794 309 51 0 0 chr12 19825056 19825095 -124457394 + (TA)n Simple_repeat Simple_repeat 1 39 0 2836 142 33 16 chr12 19825095 19825259 -124457230 - L1PB4 LINE L1 -362 5794 5634 1913 120 7 3 chr12 19825925 19826225 -124456264 - L1MA3 LINE L1 -7 6298 5998 762 187 0 0 chr12 19827073 19827212 -124455277 - FLAM_C SINE Alu -4 139 1 650 296 42 35 chr12 19827529 19827789 -124454700 + LTR16C LTR ERVL 101 362 -129 410 269 128 58 chr12 19828152 19828583 -124453906 + HERV16 LTR ERVL 343 803 -4193 362 356 17 0 chr12 19829084 19829258 -124453231 + HERV16 LTR ERVL 1454 1630 -4024 518 309 0 0 chr12 19829258 19829407 -124453082 + HERV16 LTR ERVL 1736 1884 -3112 1980 326 74 40 chr12 19829567 19830343 -124452146 + HERV16 LTR ERVL 2124 2969 -2795 2430 107 11 8 chr12 19830343 19830697 -124451792 - THE1A LTR MaLR 0 355 1 1980 326 74 40 chr12 19830697 19831314 -124451175 + HERV16 LTR ERVL 2969 3564 -2200 2249 85 7 7 chr12 19831773 19832078 -124450411 + AluSc SINE Alu 1 305 -4 227 267 50 0 chr12 19832139 19832240 -124450249 + L1ME4a LINE L1 5982 6087 -34 288 167 111 0 chr12 19833181 19833253 -124449236 + MER116 DNA Mariner 1 80 0 1100 315 163 41 chr12 19833925 19834826 -124447663 + L2 LINE L2 1953 3080 -233 2240 67 49 0 chr12 19834826 19835110 -124447379 + AluY SINE Alu 3 300 -11 1100 315 163 41 chr12 19835110 19835357 -124447132 + L2 LINE L2 3080 3295 -18 258 288 0 25 chr12 19835658 19835738 -124446751 + HAL1 LINE L1 1 78 -2429 243 61 0 0 chr12 19836733 19836766 -124445723 + (TC)n Simple_repeat Simple_repeat 2 34 0 223 349 106 15 chr12 19838123 19838255 -124444234 + L2 LINE L2 2926 3069 -203 198 386 0 0 chr12 19838399 19838469 -124444020 + L2 LINE L2 3238 3307 -6 278 274 106 26 chr12 19838985 19839098 -124443391 + MIR SINE MIR 68 189 -73 245 170 18 125 chr12 19839406 19839518 -124442971 - L1ME4a LINE L1 -53 6068 5969 635 139 104 26 chr12 19840101 19840216 -124442273 - FLAM_C SINE Alu -9 124 1 324 0 0 0 chr12 19840973 19841009 -124441480 + (TG)n Simple_repeat Simple_repeat 2 37 0 687 316 64 37 chr12 19841428 19841884 -124440605 + L1MEd LINE L1 680 1147 -4972 2049 112 7 0 chr12 19841961 19842239 -124440250 + AluSx SINE Alu 1 280 -32 265 74 19 19 chr12 19842245 19842299 -124440190 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 491 48 0 0 chr12 19842440 19842502 -124439987 + AluY SINE Alu 1 62 -251 1270 137 11 0 chr12 19842502 19842712 -124439777 + AluSg/x SINE Alu 97 308 0 381 252 42 42 chr12 19843174 19843293 -124439196 - MIR SINE MIR -70 192 74 189 345 46 11 chr12 19844656 19844743 -124437746 - MIR SINE MIR -6 256 167 5674 60 0 0 chr12 19844974 19845710 -124436779 - L1PA8 LINE L1 -2 6170 5435 1883 154 0 29 chr12 19845736 19846042 -124436447 - AluSx SINE Alu -15 297 1 309 350 117 12 chr12 19846126 19846289 -124436200 - HAL1 LINE L1 -697 1810 1631 623 318 90 38 chr12 19846290 19846711 -124435778 - HAL1 LINE L1 -904 1603 1161 332 283 131 2 chr12 19848130 19848322 -124434167 + L1ME3 LINE L1 5924 6154 -8 1076 203 25 0 chr12 19848481 19848718 -124433771 + MER63 DNA MER1_type 811 1053 -7 503 207 124 33 chr12 19848996 19849117 -124433372 + FLAM_C SINE Alu 2 133 0 3918 120 28 0 chr12 19849150 19849765 -124432724 + L1PB3 LINE L1 5523 6154 0 35 54 0 0 chr12 19850310 19850366 -124432123 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr12 19850802 19850831 -124431658 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 19852547 19852573 -124429916 + AT_rich Low_complexity Low_complexity 1 26 0 531 316 86 6 chr12 19854418 19854592 -124427897 + MIR SINE MIR 52 239 -23 397 329 99 61 chr12 19854612 19854956 -124427533 + L3 LINE CR1 1220 1576 -1 298 313 121 0 chr12 19855246 19855345 -124427144 - L2 LINE L2 -4 3309 3199 377 309 10 27 chr12 19856474 19856636 -124425853 + MER5A DNA MER1_type 20 175 -3 1522 155 70 8 chr12 19857245 19857503 -124424986 + AluSx SINE Alu 1 274 -38 317 274 0 0 chr12 19857592 19857665 -124424824 + MLT1J LTR MaLR 112 184 -327 21291 149 32 22 chr12 19858129 19858899 -124423590 - L1MA3 LINE L1 0 7724 6963 2059 116 16 26 chr12 19858899 19859210 -124423279 + AluSx SINE Alu 1 308 -4 21291 149 32 22 chr12 19859210 19866075 -124416414 - L1MA3 LINE L1 -761 6963 11 680 174 79 17 chr12 19866991 19867169 -124415320 + MER53 DNA DNA 1 189 0 281 311 57 16 chr12 19868773 19868895 -124413594 - MIR3 SINE MIR -73 135 9 2293 180 14 5 chr12 19869213 19869636 -124412853 + MLT2B1 LTR ERVL 3 429 -91 231 88 0 0 chr12 19869804 19869838 -124412651 + (T)n Simple_repeat Simple_repeat 1 34 0 412 290 13 62 chr12 19871605 19871802 -124410687 + MER5A DNA MER1_type 1 189 0 243 315 11 11 chr12 19872109 19872198 -124410291 + MIR SINE MIR 47 135 -127 192 77 0 0 chr12 19873559 19873585 -124408904 + (CAA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr12 19874632 19874660 -124407829 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 19874709 19874729 -124407760 + (A)n Simple_repeat Simple_repeat 1 20 0 2222 99 0 7 chr12 19874945 19875239 -124407250 + AluSg SINE Alu 2 293 -17 329 259 30 30 chr12 19875244 19875379 -124407110 - L1MC4 LINE L1 -1339 6983 1949 406 323 96 12 chr12 19875817 19875984 -124406505 + MER5A DNA MER1_type 7 187 -2 2361 174 83 10 chr12 19876222 19876704 -124405785 - LTR40a LTR ERVL -2 517 1 2155 241 133 46 chr12 19876787 19877552 -124404937 + L2 LINE L2 2039 2736 -577 2243 196 38 18 chr12 19877552 19878047 -124404442 - MLT1D LTR MaLR 0 505 1 2155 241 133 46 chr12 19878047 19878198 -124404291 + L2 LINE L2 2736 2872 -441 2033 108 40 77 chr12 19878198 19878272 -124404217 - THE1B LTR MaLR 0 364 289 2080 77 44 4 chr12 19878272 19878577 -124403912 + AluY SINE Alu 1 316 0 2033 108 40 77 chr12 19878577 19878879 -124403610 - THE1B LTR MaLR -75 289 1 2155 241 133 46 chr12 19878879 19879123 -124403366 + L2 LINE L2 2872 3309 -4 269 191 90 45 chr12 19879861 19879950 -124402539 + MER34 LTR ERV1 438 530 -12 4139 122 11 9 chr12 19880032 19880666 -124401823 - MER41B LTR ERV1 0 635 1 3318 125 82 16 chr12 19881143 19881717 -124400772 - LTR9 LTR ERV1 0 612 1 180 221 0 59 chr12 19882368 19882436 -124400053 + L2 LINE L2 3024 3087 -226 856 197 13 40 chr12 19882476 19882704 -124399785 - MER34 LTR ERV1 0 542 321 2077 143 36 51 chr12 19882714 19883182 -124399307 + LTR2B LTR ERV1 1 461 -29 284 279 0 13 chr12 19883361 19883440 -124399049 - MER39 LTR ERV1 -624 83 6 586 259 0 60 chr12 19883466 19883651 -124398838 + L2 LINE L2 3117 3290 -23 582 173 0 0 chr12 19883652 19883785 -124398704 + (TGGA)n Simple_repeat Simple_repeat 1 133 0 4000 165 14 11 chr12 19884111 19884821 -124397668 - MER50 LTR ERV1 -22 712 1 869 182 47 9 chr12 19885311 19885525 -124396964 + L1M4 LINE L1 4774 4995 -1151 * 5258 122 42 3 chr12 19885522 19886483 -124396006 + L1MA8 LINE L1 5231 6227 -64 666 271 53 21 chr12 19886483 19886767 -124395722 + MSTC LTR MaLR 1 293 -135 781 151 0 7 chr12 19886769 19886908 -124395581 + L1M2 LINE L1 5430 5567 -724 401 165 50 71 chr12 19886950 19887132 -124395357 + (TATG)n Simple_repeat Simple_repeat 1 178 0 739 175 26 91 chr12 19887196 19887350 -124395139 - MLT1A1 LTR MaLR -13 383 217 234 233 0 0 chr12 19887335 19887378 -124395111 + Alu SINE Alu 136 178 -130 * 1020 178 12 136 chr12 19888455 19888786 -124393703 - MLT1A1 LTR MaLR 0 365 76 985 192 0 20 chr12 19888786 19888984 -124393505 - AluJo SINE Alu -2 310 117 348 163 0 9 chr12 19888987 19889050 -124393439 - Alu SINE Alu -244 56 1 198 0 0 0 chr12 19889176 19889198 -124393291 + (A)n Simple_repeat Simple_repeat 1 22 0 1792 186 15 0 chr12 19889970 19890308 -124392181 + MER2 DNA MER2_type 1 343 -1 326 258 0 0 chr12 19893241 19893307 -124389182 + tRNA-Ile-ATT tRNA tRNA 9 74 -3 753 244 64 50 chr12 19894464 19894747 -124387742 + MLT1I LTR MaLR 20 306 -103 808 156 0 0 chr12 19895037 19895165 -124387324 + FLAM_C SINE Alu 1 128 -5 1786 194 0 6 chr12 19895697 19896011 -124386478 - AluJo SINE Alu 0 312 1 738 278 161 44 chr12 19896264 19896742 -124385747 - LTR67 LTR ERVL -4 553 20 407 260 221 16 chr12 19897263 19897587 -124384902 - L1MEc LINE L1 -5132 1815 1327 1963 140 0 20 chr12 19897904 19898197 -124384292 + AluSx SINE Alu 1 287 -25 384 22 0 0 chr12 19898200 19898245 -124384244 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 408 326 72 9 chr12 19898449 19898768 -124383721 - L1MEc LINE L1 -6023 1115 777 2363 110 0 0 chr12 19899844 19900154 -124382335 - AluSg SINE Alu 0 310 1 190 297 144 0 chr12 19900463 19900581 -124381908 - L2 LINE L2 -6 3307 3173 249 141 16 62 chr12 19900757 19900821 -124381668 - MER116 DNA Mariner 0 80 20 2852 6 0 28 chr12 19900821 19901146 -124381343 - AluYb8 SINE Alu 0 318 3 1714 180 0 35 chr12 19901261 19901578 -124380911 + AluJo SINE Alu 1 306 -6 2171 107 10 0 chr12 19901676 19901975 -124380514 + AluSx SINE Alu 1 302 -10 405 256 120 0 chr12 19902029 19902154 -124380335 - MIR SINE MIR -71 191 52 24 53 0 0 chr12 19902342 19902380 -124380109 + AT_rich Low_complexity Low_complexity 1 38 0 204 324 111 20 chr12 19903555 19903808 -124378681 + L2 LINE L2 1799 2074 -1240 206 227 15 45 chr12 19904689 19904755 -124377734 + CT-rich Low_complexity Low_complexity 2 65 0 1166 276 4 0 chr12 19907351 19907601 -124374888 + MIR SINE MIR 2 252 -10 1093 229 54 23 chr12 19907672 19908026 -124374463 + LTR40a LTR ERVL 155 519 0 258 272 0 0 chr12 19908037 19908118 -124374371 + L1ME1 LINE L1 3348 3428 -2718 2023 254 23 7 chr12 19908121 19908922 -124373567 + L1ME1 LINE L1 5062 5873 -293 30 69 0 0 chr12 19909354 19909412 -124373077 + GC_rich Low_complexity Low_complexity 1 58 0 185 0 40 0 chr12 19909825 19909850 -124372639 + (GGA)n Simple_repeat Simple_repeat 3 28 0 284 349 86 0 chr12 19912133 19912285 -124370204 - MIR SINE MIR -25 237 73 506 277 34 5 chr12 19912408 19912579 -124369910 - L1ME2 LINE L1 -71 6091 5921 2182 120 0 3 chr12 19912579 19912870 -124369619 + AluSq SINE Alu 1 290 -23 10342 129 37 27 chr12 19913011 19914839 -124367650 - Tigger1 DNA MER2_type -572 1846 1 355 311 67 7 chr12 19914839 19914974 -124367515 + MIR SINE MIR 5 147 -115 255 204 0 0 chr12 19914999 19915053 -124367436 + (TA)n Simple_repeat Simple_repeat 1 54 0 243 0 0 0 chr12 19915555 19915582 -124366907 + (T)n Simple_repeat Simple_repeat 1 27 0 28 0 0 0 chr12 19915675 19915703 -124366786 + GC_rich Low_complexity Low_complexity 1 28 0 396 0 0 0 chr12 19917127 19917171 -124365318 + (TG)n Simple_repeat Simple_repeat 2 45 0 2218 112 7 3 chr12 19917725 19918021 -124364468 + AluSq SINE Alu 1 297 -16 436 245 72 29 chr12 19918172 19918311 -124364178 + MIR SINE MIR 30 174 -88 2239 88 0 33 chr12 19918420 19918725 -124363764 + AluSx SINE Alu 1 295 -17 2373 100 0 0 chr12 19919440 19919750 -124362739 - AluSg SINE Alu 0 310 1 847 284 86 0 chr12 19919904 19920136 -124362353 - MIR SINE MIR -10 252 1 414 311 112 31 chr12 19920296 19920457 -124362032 + MER91A DNA MER1_type 5 178 -18 2315 52 18 0 chr12 19920706 19920992 -124361497 + AluY SINE Alu 1 291 -20 22 35 0 0 chr12 19921004 19921033 -124361456 + AT_rich Low_complexity Low_complexity 1 29 0 1564 173 23 47 chr12 19921033 19921333 -124361156 - AluJo SINE Alu -19 293 1 654 132 93 39 chr12 19921335 19921464 -124361025 - FRAM SINE Alu -17 159 24 260 308 0 0 chr12 19922278 19922343 -124360146 + GA-rich Low_complexity Low_complexity 2 66 0 21 0 0 0 chr12 19923751 19923772 -124358717 + AT_rich Low_complexity Low_complexity 1 21 0 276 353 75 40 chr12 19924094 19924267 -124358222 + MIR SINE MIR 34 212 -50 2302 100 3 0 chr12 19924445 19924745 -124357744 - AluSx SINE Alu -11 301 1 27 62 0 0 chr12 19926613 19926661 -124355828 + AT_rich Low_complexity Low_complexity 1 48 0 2018 147 3 0 chr12 19926702 19927002 -124355487 + AluJb SINE Alu 1 301 -11 1590 168 7 58 chr12 19927485 19927631 -124354858 + AluJo SINE Alu 5 128 -184 2370 97 0 0 chr12 19927631 19927929 -124354560 + AluSc SINE Alu 1 298 -11 1590 168 7 58 chr12 19927929 19928092 -124354397 + AluJo SINE Alu 128 298 -14 2199 104 3 7 chr12 19928136 19928434 -124354055 + AluSc SINE Alu 1 297 -12 207 0 0 0 chr12 19929166 19929189 -124353300 + (TA)n Simple_repeat Simple_repeat 2 24 0 343 312 8 16 chr12 19929845 19929970 -124352519 - MIR SINE MIR -94 168 45 385 296 45 18 chr12 19931001 19931221 -124351268 + L1ME3A LINE L1 2395 2620 -3526 563 240 7 27 chr12 19931359 19931509 -124350980 - MER58C DNA MER1_type -68 147 1 872 152 8 0 chr12 19931554 19931686 -124350803 + FLAM_C SINE Alu 1 133 -10 1689 245 75 109 chr12 19931698 19931737 -124350752 + L1ME3A LINE L1 3357 3396 -2774 2010 151 3 0 chr12 19931737 19932041 -124350448 + AluSx SINE Alu 1 305 -7 1689 245 75 109 chr12 19932041 19934789 -124347700 + L1ME3A LINE L1 3396 6047 -123 3320 78 2 21 chr12 19934789 19935128 -124347361 - L1PA14 LINE L1 -1 6160 5831 1996 100 0 15 chr12 19935128 19935398 -124347091 - AluSc SINE Alu -9 300 35 3320 78 2 21 chr12 19935398 19935534 -124346955 - L1PA14 LINE L1 -330 5831 5694 1689 245 75 109 chr12 19935534 19935564 -124346925 + L1ME3A LINE L1 6047 6077 -93 2394 96 0 6 chr12 19935598 19935910 -124346579 - AluSx SINE Alu -2 310 1 1136 151 14 119 chr12 19936530 19936815 -124345674 + AluJo SINE Alu 39 293 -19 181 364 0 0 chr12 19939565 19939631 -124342858 - L2 LINE L2 -451 2863 2798 991 266 89 51 chr12 19940064 19940538 -124341951 + MLT1J LTR MaLR 1 492 -19 227 234 0 0 chr12 19940692 19940739 -124341750 + MLT1I LTR MaLR 98 144 -265 260 193 26 13 chr12 19940932 19941010 -124341479 + MLT1H LTR MaLR 317 546 -3 2104 106 28 0 chr12 19941176 19941458 -124341031 + AluSx SINE Alu 1 290 -22 203 175 0 0 chr12 19941807 19941847 -124340642 + T-rich Low_complexity Low_complexity 1 40 0 293 206 262 16 chr12 19942061 19942187 -124340302 + MLT2E LTR ERVL 296 452 -176 2142 135 3 3 chr12 19942314 19942626 -124339863 - AluSx SINE Alu 0 312 1 1817 168 21 0 chr12 19942858 19943149 -124339340 + AluJo SINE Alu 2 298 -14 489 53 0 40 chr12 19943665 19943741 -124338748 + L1PA7 LINE L1 6082 6154 0 1798 201 16 26 chr12 19943980 19944358 -124338131 - MLT1A2 LTR MaLR 0 374 1 1388 249 73 39 chr12 19945235 19945700 -124336789 - MLT1H1 LTR MaLR 0 555 75 883 233 138 63 chr12 19946770 19947212 -124335277 - MLT1H LTR MaLR -1 548 74 489 34 0 0 chr12 19947747 19947806 -124334683 + (TA)n Simple_repeat Simple_repeat 2 60 0 832 129 0 0 chr12 19948070 19948194 -124334295 + AluJb SINE Alu 180 303 -9 2400 66 7 0 chr12 19948868 19949173 -124333316 + AluY SINE Alu 1 307 -4 320 292 68 30 chr12 19949440 19949626 -124332863 - MIR3 SINE MIR -70 192 3 1766 174 3 20 chr12 19951281 19951585 -124330904 - AluSx SINE Alu -13 299 1 348 288 55 68 chr12 19952422 19952568 -124329921 + MIR3 SINE MIR 3 146 -62 373 283 65 28 chr12 19952965 19953212 -124329277 + L2 LINE L2 1797 2052 -1262 405 330 27 5 chr12 19953219 19953404 -124329085 + MER5A DNA MER1_type 1 189 0 370 315 112 52 chr12 19953408 19953865 -124328624 + L2 LINE L2 2219 2783 -531 327 387 61 11 chr12 19953941 19954122 -124328367 + L2 LINE L2 2894 3083 -189 262 61 41 0 chr12 19954559 19954608 -124327881 + (TA)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr12 19955067 19955091 -124327398 + AT_rich Low_complexity Low_complexity 1 24 0 209 254 0 75 chr12 19955157 19955224 -124327265 + L2 LINE L2 3211 3272 0 938 277 52 47 chr12 19956464 19956930 -124325559 + MLT1J LTR MaLR 44 511 0 295 224 158 0 chr12 19956930 19957006 -124325483 + L2 LINE L2 3184 3271 -1 225 125 0 0 chr12 19957457 19957474 -124325015 + (TAA)n Simple_repeat Simple_repeat 1 17 -23 2017 127 0 3 chr12 19957474 19957758 -124324731 + AluSg SINE Alu 1 283 -27 225 125 0 0 chr12 19957758 19957780 -124324709 + (TAA)n Simple_repeat Simple_repeat 16 40 0 2281 115 0 3 chr12 19958114 19958426 -124324063 + AluSq SINE Alu 1 311 -2 810 243 6 0 chr12 19959223 19959400 -124323089 - MER45A DNA AcHobo 0 178 1 293 197 26 66 chr12 19959559 19959635 -124322854 - L2 LINE L2 0 3313 3241 712 289 88 29 chr12 19959706 19960193 -124322296 + L1ME4a LINE L1 5501 6029 -92 2182 122 0 0 chr12 19960193 19960480 -124322009 - AluSx SINE Alu -25 287 1 712 289 88 29 chr12 19960480 19960574 -124321915 + L1ME4a LINE L1 6029 6116 -5 225 321 12 12 chr12 19960759 19960840 -124321649 - L3 LINE CR1 -24 1553 1473 1528 189 35 7 chr12 19961139 19961425 -124321064 - AluJo SINE Alu -18 294 1 1883 189 113 0 chr12 19961449 19961830 -124320659 + MSTB LTR MaLR 1 424 -2 306 0 0 0 chr12 19962060 19962094 -124320395 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 0 0 0 chr12 19962385 19962423 -124320066 + (TTTTC)n Simple_repeat Simple_repeat 1 38 0 2115 101 0 21 chr12 19962424 19962895 -124319594 - AluSx SINE Alu 0 467 3 872 167 0 29 chr12 19963250 19963388 -124319101 - AluJo SINE Alu -178 134 1 1577 150 61 64 chr12 19963421 19963570 -124318919 - AluJo SINE Alu 0 312 164 2421 77 0 3 chr12 19963570 19963869 -124318620 - AluY SINE Alu -13 298 1 1577 150 61 64 chr12 19963869 19964032 -124318457 - AluJo SINE Alu -148 164 1 1744 142 4 4 chr12 19964721 19964975 -124317514 - AluJb SINE Alu -58 254 1 1074 185 5 5 chr12 19965547 19965736 -124316753 + AluJo SINE Alu 105 293 -19 2916 132 43 62 chr12 19965752 19966062 -124316427 + L1MB4 LINE L1 5584 5878 -302 2367 66 0 7 chr12 19966062 19966365 -124316124 + AluY SINE Alu 1 301 -10 2916 132 43 62 chr12 19966365 19966662 -124315827 + L1MB4 LINE L1 5878 6179 -1 2541 52 0 0 chr12 19967043 19967352 -124315137 - AluY SINE Alu -2 309 1 421 282 61 0 chr12 19967366 19967547 -124314942 + L1ME4a LINE L1 5602 5793 -328 411 322 192 9 chr12 19967561 19967775 -124314714 + MIR SINE MIR 8 260 -2 397 293 29 29 chr12 19967896 19968070 -124314419 + L1ME4a LINE L1 5947 6120 -1 2514 50 0 0 chr12 19968183 19968482 -124314007 - AluY SINE Alu -8 303 5 41 30 0 15 chr12 19969551 19969576 -124312913 + AT_rich Low_complexity Low_complexity 1 25 -40 1152 84 0 0 chr12 19969576 19969730 -124312759 + L1PB1 LINE L1 5997 6150 -1 41 30 0 15 chr12 19969730 19969770 -124312719 + AT_rich Low_complexity Low_complexity 25 65 0 1971 147 0 13 chr12 19969993 19970292 -124312197 + AluSx SINE Alu 3 297 -15 209 321 12 12 chr12 19971076 19971157 -124311332 - L2 LINE L2 -213 3059 2979 591 349 144 23 chr12 19971339 19971986 -124310503 - L2 LINE L2 -561 2753 1961 2187 118 3 7 chr12 19971986 19972291 -124310198 - AluSx SINE Alu -7 305 2 591 349 144 23 chr12 19972291 19972560 -124309929 - L2 LINE L2 -1353 1961 1726 186 161 0 0 chr12 19973237 19973268 -124309221 - MIR SINE MIR -8 254 224 260 357 18 30 chr12 19973268 19973436 -124309053 - L2 LINE L2 -159 3113 2948 262 169 0 62 chr12 19973474 19973539 -124308950 - L2 LINE L2 -660 2654 2594 2378 75 9 25 chr12 19973595 19973913 -124308576 - AluSp SINE Alu 0 313 1 2254 210 11 11 chr12 19974069 19974536 -124307953 + MLT1C LTR MaLR 1 467 0 741 283 50 35 chr12 19975312 19975595 -124306894 - MLT1I LTR MaLR -7 402 116 287 271 45 39 chr12 19975809 19975964 -124306525 - MER103 DNA DNA -2 164 9 23 33 0 0 chr12 19976078 19976108 -124306381 + AT_rich Low_complexity Low_complexity 1 30 0 1681 174 0 27 chr12 19976357 19976679 -124305810 - AluJb SINE Alu 0 312 1 21 36 0 0 chr12 19976900 19976928 -124305561 + AT_rich Low_complexity Low_complexity 1 28 0 2128 121 0 10 chr12 19977407 19977705 -124304784 + AluSx SINE Alu 1 295 -17 25 51 0 0 chr12 19977728 19977767 -124304722 + AT_rich Low_complexity Low_complexity 1 39 0 212 167 24 0 chr12 19977775 19977817 -124304672 + (CA)n Simple_repeat Simple_repeat 1 43 0 * 220 191 0 0 chr12 19977812 19977854 -124304635 + (CAA)n Simple_repeat Simple_repeat 2 43 0 207 0 0 0 chr12 19979779 19979802 -124302687 + (A)n Simple_repeat Simple_repeat 1 23 0 2060 144 7 0 chr12 19979907 19980212 -124302277 - AluSx SINE Alu -5 307 1 2090 133 3 19 chr12 19981052 19981369 -124301120 + AluSx SINE Alu 1 312 0 809 161 84 7 chr12 19981602 19981745 -124300744 + FRAM SINE Alu 1 145 -31 4643 73 5 8 chr12 19982007 19982594 -124299895 + SVA Other Other 802 1386 0 2459 67 0 0 chr12 19983594 19983891 -124298598 - AluSg SINE Alu -13 297 1 1050 198 0 6 chr12 19984019 19984201 -124298288 - AluJo SINE Alu -12 300 120 1668 126 0 0 chr12 19984499 19984729 -124297760 + AluSg/x SINE Alu 82 311 -1 1773 177 19 19 chr12 19985682 19985993 -124296496 + AluJo SINE Alu 2 312 0 453 81 0 0 chr12 19986446 19986508 -124295981 + (TA)n Simple_repeat Simple_repeat 1 62 0 1687 184 54 3 chr12 19986773 19987105 -124295384 - MLT1C LTR MaLR 0 467 119 * 2023 189 78 25 chr12 19987099 19987665 -124294824 + LTR1B LTR ERV1 231 826 0 595 277 131 18 chr12 19987992 19988320 -124294169 + MLT1G1 LTR MaLR 231 595 0 1259 148 14 23 chr12 19988479 19988695 -124293794 + L1PB4 LINE L1 5938 6151 -5 1812 160 3 7 chr12 19988698 19989001 -124293488 - AluJb SINE Alu 0 302 1 355 366 41 5 chr12 19989034 19989228 -124293261 + MIR SINE MIR 61 261 -1 634 355 96 15 chr12 19989252 19989660 -124292829 - L2 LINE L2 -6 3266 2826 581 301 75 25 chr12 19991499 19991738 -124290751 + MIR SINE MIR 6 256 -6 853 323 92 11 chr12 19991756 19992468 -124290021 - L2 LINE L2 -1 3312 2524 1876 169 0 3 chr12 19992485 19992781 -124289708 + AluJb SINE Alu 1 295 -17 1218 204 5 0 chr12 19993899 19994120 -124288369 - AluJo SINE Alu -6 306 85 453 355 62 5 chr12 19994384 19994595 -124287894 - MIR SINE MIR -12 250 28 339 311 23 15 chr12 19994949 19995081 -124287408 + MLT1J LTR MaLR 2 134 -377 2169 181 106 53 chr12 19995111 19995582 -124286907 - MER92B LTR ERV1 0 636 125 2154 124 134 11 chr12 19995582 19995962 -124286527 - MSTA LTR MaLR 0 428 2 2169 181 106 53 chr12 19995962 19996094 -124286395 - MER92B LTR ERV1 -511 125 1 427 205 18 94 chr12 19996171 19996342 -124286147 + MLT1J LTR MaLR 318 475 -36 1017 207 110 61 chr12 19996853 19997304 -124285185 + MER39 LTR ERV1 67 707 0 2672 180 104 16 chr12 19997947 19998515 -124283974 - LTR26E LTR ERV1 -4 618 1 328 259 9 28 chr12 19999033 19999141 -124283348 + MER34 LTR ERV1 25 130 -412 2243 110 7 3 chr12 19999428 19999736 -124282753 - AluSx SINE Alu -3 309 1 326 219 21 52 chr12 20000179 20000275 -124282214 + L2 LINE L2 3221 3313 0 2740 203 99 58 chr12 20000291 20001105 -124281384 + MER21B LTR ERV1 5 852 -11 216 351 121 17 chr12 20001264 20001438 -124281051 + MIR SINE MIR 71 262 0 973 231 100 31 chr12 20001744 20001885 -124280604 + MER93a LTR ERV1 61 191 -211 1841 136 70 0 chr12 20001885 20002201 -124280288 + MER44D DNA MER2_type 2 609 0 973 231 100 31 chr12 20002201 20002379 -124280110 + MER93a LTR ERV1 191 402 0 1139 175 9 33 chr12 20002774 20002985 -124279504 - AluJo SINE Alu -21 291 86 2202 85 4 0 chr12 20004221 20004537 -124277952 - AluSx SINE Alu 0 317 1 326 318 65 50 chr12 20005134 20005335 -124277154 - L2 LINE L2 -175 3097 2894 207 315 77 23 chr12 20005386 20005516 -124276973 - L2 LINE L2 -558 2756 2620 551 197 62 68 chr12 20005579 20005725 -124276764 - MLT2D LTR ERVL -40 480 237 371 164 27 9 chr12 20005725 20005835 -124276654 + (TA)n Simple_repeat Simple_repeat 2 113 0 272 151 57 0 chr12 20005837 20005890 -124276599 + MLT2D LTR ERVL 234 289 -125 243 169 0 0 chr12 20005903 20005974 -124276515 + (TA)n Simple_repeat Simple_repeat 1 71 0 226 233 82 92 chr12 20005974 20006180 -124276309 + HAL1 LINE L1 837 1040 -1467 193 222 0 56 chr12 20006688 20006742 -124275747 - L2 LINE L2 0 3313 3263 1897 125 78 33 chr12 20008336 20008695 -124273794 - THE1C LTR MaLR 0 375 1 7434 142 7 43 chr12 20008697 20010057 -124272432 - THE1C-int LTR MaLR -2 1578 269 1184 147 30 22 chr12 20010157 20010389 -124272100 + THE1C LTR MaLR 142 375 0 1520 93 0 4 chr12 20010390 20010615 -124271874 - THE1C-int LTR MaLR -1354 226 3 1908 124 93 34 chr12 20010617 20010971 -124271518 - THE1C LTR MaLR 0 375 1 2421 229 84 20 chr12 20011078 20011778 -124270711 - MER21B LTR ERV1 -107 756 12 266 316 22 104 chr12 20012595 20012741 -124269748 - L2 LINE L2 -562 2752 2636 2161 122 0 0 chr12 20012741 20013028 -124269461 + AluSg SINE Alu 5 291 -19 266 316 22 104 chr12 20013028 20013150 -124269339 - L2 LINE L2 -678 2636 2506 2039 162 68 16 chr12 20013436 20013874 -124268615 - LOR1b LTR ERV1 0 461 1 472 330 123 37 chr12 20014183 20014773 -124267716 - L2 LINE L2 0 3272 2647 390 42 0 0 chr12 20017597 20017645 -124264844 + (TG)n Simple_repeat Simple_repeat 2 49 0 798 217 42 19 chr12 20017762 20018025 -124264464 - MER69 DNA AcHobo -7 2519 2251 * 1963 246 72 50 chr12 20018023 20018267 -124264222 - MER69 DNA AcHobo -1425 1101 864 612 211 31 0 chr12 20018267 20018395 -124264094 - FLAM_A SINE Alu -1 132 1 1963 246 72 50 chr12 20018395 20019143 -124263346 - MER69 DNA AcHobo -1662 864 8 2145 132 0 6 chr12 20019264 20019575 -124262914 + AluSq SINE Alu 1 309 -4 3818 44 0 0 chr12 20020015 20020474 -124262015 - L1PA3 LINE L1 -5 6150 5692 2290 88 0 32 chr12 20020582 20020890 -124261599 + AluSx SINE Alu 1 298 -14 415 367 54 17 chr12 20021015 20021255 -124261234 - L2 LINE L2 -220 3052 2804 349 248 72 20 chr12 20021411 20021564 -124260925 + L1MC4a LINE L1 6137 6297 -1511 8419 135 36 2 chr12 20021564 20022990 -124259499 + Tigger1 DNA MER2_type 1 1475 -943 5292 85 8 30 chr12 20022994 20023795 -124258694 + L1PA11 LINE L1 5384 6166 -8 4701 133 90 27 chr12 20023810 20024501 -124257988 + Tigger1 DNA MER2_type 1465 2227 -191 2092 143 10 0 chr12 20024501 20024809 -124257680 - AluSx SINE Alu -1 311 1 4701 133 90 27 chr12 20024809 20025013 -124257476 + Tigger1 DNA MER2_type 2227 2417 -1 1303 236 73 13 chr12 20025083 20025536 -124256953 + L1MC4 LINE L1 6599 7078 -964 1252 191 0 42 chr12 20025543 20025779 -124256710 + AluJo SINE Alu 87 312 0 1941 204 60 23 chr12 20025804 20026284 -124256205 + L1MC4 LINE L1 7191 7688 -354 857 107 7 14 chr12 20026303 20026443 -124256046 - L1PA14 LINE L1 0 6161 6023 1911 203 27 47 chr12 20026453 20026505 -124255984 + L1ME LINE L1 5150 5202 -964 2191 120 0 16 chr12 20026505 20026821 -124255668 + AluSx SINE Alu 1 311 -1 1911 203 27 47 chr12 20026821 20027355 -124255134 + L1ME LINE L1 5202 5723 -443 1443 267 71 53 chr12 20027355 20027508 -124254981 + L2 LINE L2 2550 2699 -614 2992 55 3 8 chr12 20027508 20027893 -124254596 - L1PA7 LINE L1 -1 6153 5771 1443 267 71 53 chr12 20027893 20028294 -124254195 + L2 LINE L2 2699 3165 -148 2349 84 3 23 chr12 20028294 20028604 -124253885 - AluSp SINE Alu -9 304 1 1443 267 71 53 chr12 20028604 20028756 -124253733 + L2 LINE L2 3165 3313 0 1608 177 52 0 chr12 20034343 20034513 -124247976 - AluJo SINE Alu -9 303 110 180 0 0 0 chr12 20034513 20034533 -124247956 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1608 177 52 0 chr12 20034533 20034650 -124247839 - AluJo SINE Alu -202 110 1 1925 89 75 14 chr12 20035511 20035792 -124246697 - AluSq SINE Alu -15 298 1 181 189 0 57 chr12 20036078 20036131 -124246358 - MIR SINE MIR -45 217 168 2370 95 0 0 chr12 20036761 20037057 -124245432 + AluSx SINE Alu 6 301 -11 364 346 96 51 chr12 20037298 20037786 -124244703 - L2 LINE L2 -459 2855 2346 504 271 107 23 chr12 20037971 20038148 -124244341 - L2 LINE L2 -2 3311 3120 205 314 15 73 chr12 20038580 20038717 -124243772 - L2 LINE L2 -68 3245 3117 210 257 188 30 chr12 20039006 20039107 -124243382 + L2 LINE L2 3151 3267 -5 2094 107 0 17 chr12 20039260 20039558 -124242931 - AluSx SINE Alu -19 293 1 1757 153 10 43 chr12 20040542 20040842 -124241647 + AluJo SINE Alu 1 290 -22 2348 165 105 31 chr12 20041147 20041754 -124240735 - L1MA9 LINE L1 -168 6144 5493 371 258 32 8 chr12 20041872 20041996 -124240493 - L1ME4a LINE L1 -1 6120 5994 231 293 37 18 chr12 20042012 20042176 -124240313 + (TA)n Simple_repeat Simple_repeat 2 168 0 275 198 0 143 chr12 20042473 20042564 -124239925 - L1ME4a LINE L1 -538 5583 5506 388 237 101 0 chr12 20042673 20042812 -124239677 - MLT1H1 LTR MaLR -3 552 400 333 289 83 22 chr12 20043074 20043254 -124239235 + MER117 DNA MER1_type 1 191 -6 390 345 115 14 chr12 20043866 20044144 -124238345 - L1ME4a LINE L1 -89 6032 5727 310 254 71 25 chr12 20044652 20044856 -124237633 - L1ME4a LINE L1 -653 5511 5299 311 196 0 103 chr12 20044918 20045025 -124237464 - Charlie7 DNA MER1_type -6 2606 2511 431 129 69 10 chr12 20045029 20045130 -124237359 - Charlie7 DNA MER1_type -2455 157 51 192 77 0 0 chr12 20046051 20046077 -124236412 + (T)n Simple_repeat Simple_repeat 1 26 0 1848 160 3 7 chr12 20046208 20046502 -124235987 - AluJo SINE Alu -19 293 1 2322 111 0 0 chr12 20046511 20046818 -124235671 - AluSx SINE Alu -2 310 4 1361 254 62 47 chr12 20047656 20047695 -124234794 - MLT1H LTR MaLR 0 549 512 2231 86 7 10 chr12 20047695 20047998 -124234491 + AluY SINE Alu 10 311 0 1361 254 62 47 chr12 20047998 20048494 -124233995 - MLT1H LTR MaLR -37 512 6 419 349 51 20 chr12 20048905 20049100 -124233389 + L2 LINE L2 3104 3304 -9 228 343 140 19 chr12 20049271 20049586 -124232903 - L2 LINE L2 -2200 1114 762 270 343 106 16 chr12 20049590 20049844 -124232645 - L2 LINE L2 -2881 433 157 2442 70 0 0 chr12 20050330 20050631 -124231858 - AluY SINE Alu -10 301 1 238 308 47 0 chr12 20051323 20051430 -124231059 - L1ME4a LINE L1 -891 5255 5144 1079 279 101 45 chr12 20051508 20051899 -124230590 - L1ME4a LINE L1 -1954 4192 3757 1459 179 19 19 chr12 20051899 20052212 -124230277 - L1MC1 LINE L1 -6 6327 6015 1079 279 101 45 chr12 20052212 20052394 -124230095 - L1ME4a LINE L1 -2389 3757 3587 232 281 100 76 chr12 20052405 20052775 -124229714 - L1ME4a LINE L1 -3575 2571 2193 189 121 0 0 chr12 20054658 20054691 -124227798 + (T)n Simple_repeat Simple_repeat 1 33 0 1682 122 17 54 chr12 20055234 20055530 -124226959 + AluSx SINE Alu 7 291 -21 339 25 0 0 chr12 20055559 20055599 -124226890 + (CA)n Simple_repeat Simple_repeat 2 41 0 201 344 62 31 chr12 20055739 20055835 -124226654 - L2 LINE L2 -23 3249 3151 206 256 12 49 chr12 20056040 20056122 -124226367 - MIR SINE MIR -14 248 170 2228 75 0 4 chr12 20056557 20056835 -124225654 + AluY SINE Alu 16 292 -19 305 231 308 14 chr12 20058910 20059131 -124223358 - L1ME4a LINE L1 -2 6119 5834 23 0 0 0 chr12 20059280 20059303 -124223186 + AT_rich Low_complexity Low_complexity 1 23 0 242 146 0 73 chr12 20060036 20060091 -124222398 + MER5B DNA MER1_type 128 178 0 1020 177 35 0 chr12 20060434 20060637 -124221852 - Charlie4 DNA MER1_type -1735 226 17 209 229 49 33 chr12 20060859 20060920 -124221569 - MIR SINE MIR -10 252 191 255 320 41 25 chr12 20061165 20061287 -124221202 + MIR SINE MIR 86 209 -53 419 278 58 68 chr12 20061437 20061642 -124220847 - MIR SINE MIR -3 259 57 851 114 0 0 chr12 20111643 20111766 -124170723 - L1P5 LINE L1 -496 5660 5538 313 329 92 38 chr12 20112177 20112417 -124170072 - MIR SINE MIR -3 259 7 1994 123 3 23 chr12 20112591 20112900 -124169589 + AluJb SINE Alu 4 306 -6 200 176 20 20 chr12 20112959 20113010 -124169479 + (TA)n Simple_repeat Simple_repeat 2 52 0 294 259 26 17 chr12 20113011 20113127 -124169362 - L1ME4a LINE L1 -1942 5866 5750 264 59 0 0 chr12 20113998 20114032 -124168457 + (T)n Simple_repeat Simple_repeat 1 34 0 199 328 80 42 chr12 20114221 20114483 -124168006 + L2 LINE L2 1834 2105 -1209 416 306 261 13 chr12 20114546 20114853 -124167636 + L2 LINE L2 2904 3286 -27 513 0 0 0 chr12 20114880 20114937 -124167552 + (TG)n Simple_repeat Simple_repeat 2 58 0 1051 276 140 52 chr12 20115084 20115861 -124166628 + L2 LINE L2 2450 3311 -2 21 0 0 0 chr12 20116070 20116091 -124166398 + AT_rich Low_complexity Low_complexity 1 21 0 2509 123 63 19 chr12 20117013 20117486 -124165003 + L1MA4A LINE L1 5808 6301 -2 3115 212 62 26 chr12 20117922 20119184 -124163305 + L1MB7 LINE L1 4857 6171 -13 342 317 85 18 chr12 20119399 20119563 -124162926 + MIR SINE MIR 48 222 -40 307 155 35 0 chr12 20119857 20119915 -124162574 + L1MC1 LINE L1 6110 6169 -164 196 291 13 25 chr12 20123974 20124053 -124158436 + MIR SINE MIR 21 98 -110 238 280 0 0 chr12 20125276 20125326 -124157163 + L2 LINE L2 3210 3259 -13 2192 91 10 7 chr12 20125329 20125625 -124156864 + AluSq SINE Alu 1 297 -16 277 328 147 17 chr12 20125947 20126063 -124156426 + 7SLRNA srpRNA srpRNA 25 155 -165 8065 134 20 2 chr12 20126187 20127462 -124155027 + HSMAR2 DNA Mariner 2 1300 -2 23 68 0 0 chr12 20128289 20128333 -124154156 + AT_rich Low_complexity Low_complexity 1 44 0 959 208 153 64 chr12 20128417 20128836 -124153653 + MLT1D LTR MaLR 7 462 -43 1553 131 15 12 chr12 20128841 20129289 -124153200 - LTR54 LTR ERV1 0 510 2 311 154 0 0 chr12 20129296 20129348 -124153141 - MLT1D LTR MaLR 0 505 454 582 140 0 11 chr12 20129402 20129495 -124152994 + AluSg/x SINE Alu 192 283 -27 1464 135 9 0 chr12 20129604 20129819 -124152670 + AluSq SINE Alu 1 217 -96 195 69 0 0 chr12 20130026 20130055 -124152434 + (T)n Simple_repeat Simple_repeat 1 29 0 227 292 92 15 chr12 20130076 20130141 -124152348 - MIR SINE MIR -185 77 8 207 344 0 0 chr12 20130435 20130496 -124151993 - L2 LINE L2 -227 3045 2985 188 339 91 8 chr12 20131892 20132013 -124150476 - L2 LINE L2 -1965 1349 1219 2340 85 3 0 chr12 20132099 20132392 -124150097 + AluSx SINE Alu 1 294 -18 23 33 0 0 chr12 20132496 20132526 -124149963 + AT_rich Low_complexity Low_complexity 1 30 0 2291 107 0 0 chr12 20133584 20133882 -124148607 + AluSx SINE Alu 1 298 -14 222 228 0 152 chr12 20134380 20134459 -124148030 - L2 LINE L2 -1 3312 3246 199 318 71 19 chr12 20134878 20135032 -124147457 - L2 LINE L2 -1341 1973 1812 460 177 150 9 chr12 20135117 20135230 -124147259 - MLT1F1 LTR MaLR -6 561 433 233 167 0 0 chr12 20135227 20135263 -124147226 - MLT1F LTR MaLR -506 36 1 * 203 120 0 20 chr12 20136097 20136147 -124146342 + (TTTTTA)n Simple_repeat Simple_repeat 1 49 0 459 0 0 0 chr12 20136148 20136204 -124146285 - L1HS LINE L1 -2 6153 6098 1151 192 0 63 chr12 20136236 20136491 -124145998 - MER8 DNA MER2_type 0 239 1 5107 168 56 7 chr12 20137994 20138998 -124143491 + L1MC3 LINE L1 5281 5400 -746 844 118 99 0 chr12 20139010 20139162 -124143327 + L1MC3 LINE L1 7450 7616 -169 743 131 0 77 chr12 20139175 20139305 -124143184 + FLAM_A SINE Alu 1 120 -13 288 211 0 0 chr12 20139305 20139381 -124143108 + (TA)n Simple_repeat Simple_repeat 1 76 0 180 77 0 0 chr12 20140193 20140219 -124142270 + (T)n Simple_repeat Simple_repeat 1 26 0 296 266 199 6 chr12 20140248 20140405 -124142084 - HsTC2 DNA Tc2 -417 1481 1295 348 245 32 21 chr12 20140418 20140512 -124141977 - HsTC2 DNA Tc2 -1754 144 50 239 281 0 18 chr12 20140746 20140803 -124141686 - MER113 DNA MER1_type? -2 519 464 198 0 0 0 chr12 20141570 20141592 -124140897 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 661 208 107 7 chr12 20142055 20142204 -124140285 + FAM SINE Alu 1 164 -11 538 198 0 33 chr12 20143204 20143325 -124139164 - L1MB5 LINE L1 -1 6173 6057 2418 139 31 7 chr12 20143329 20143754 -124138735 - L1MB5 LINE L1 -204 5970 5536 314 234 46 138 chr12 20144388 20144606 -124137883 + MLT1L LTR MaLR 1 198 -417 259 195 61 49 chr12 20144622 20144704 -124137785 - MLT1J LTR MaLR -52 459 377 314 318 110 13 chr12 20144838 20144992 -124137497 - MLT1J LTR MaLR -342 169 1 485 234 167 31 chr12 20145684 20145876 -124136613 - MIR SINE MIR -19 243 26 7037 118 135 102 chr12 20146468 20148112 -124134377 - pTR5 LTR ERV1 0 2438 741 347 227 18 64 chr12 20148723 20148833 -124133656 - L1MC4 LINE L1 -1339 6703 6599 23 54 0 0 chr12 20148946 20148983 -124133506 + AT_rich Low_complexity Low_complexity 1 37 0 305 280 13 0 chr12 20149491 20149566 -124132923 - L2 LINE L2 -252 3061 2986 219 254 16 0 chr12 20150821 20150884 -124131605 - L2 LINE L2 -1319 1995 1932 222 287 79 114 chr12 20151399 20151601 -124130888 + L2 LINE L2 3015 3209 -63 776 303 16 12 chr12 20152675 20152926 -124129563 - MIR SINE MIR -9 253 2 332 278 135 53 chr12 20152944 20153225 -124129264 + L1ME LINE L1 5379 5682 -439 704 257 122 14 chr12 20153425 20153647 -124128842 + MIR SINE MIR 3 248 -14 282 239 87 0 chr12 20153668 20153760 -124128729 + HAL1b LINE L1 1249 1348 0 189 0 0 0 chr12 20155999 20156020 -124126469 + (A)n Simple_repeat Simple_repeat 1 21 0 1602 178 22 0 chr12 20157640 20157810 -124124679 - AluJo SINE Alu -10 302 122 242 28 0 28 chr12 20157810 20157846 -124124643 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1602 178 22 0 chr12 20157846 20157951 -124124538 - AluJo SINE Alu -190 122 21 2019 137 3 19 chr12 20158673 20158987 -124123502 + AluSx SINE Alu 1 309 -3 2019 120 0 7 chr12 20159428 20159740 -124122749 - AluSx SINE Alu 0 310 1 298 284 46 9 chr12 20160505 20160614 -124121875 + MIR SINE MIR 73 185 -77 32 0 0 0 chr12 20161254 20161286 -124121203 + AT_rich Low_complexity Low_complexity 1 32 0 1995 82 22 0 chr12 20162681 20162950 -124119539 + AluSq SINE Alu 36 310 -3 1827 136 7 3 chr12 20163191 20163478 -124119011 - AluY SINE Alu -23 288 1 2164 97 24 0 chr12 20163543 20163831 -124118658 + AluSg1 SINE Alu 1 295 -14 41 21 0 0 chr12 20165089 20165137 -124117352 + AT_rich Low_complexity Low_complexity 1 48 0 820 124 18 0 chr12 20165151 20165264 -124117225 - FRAM SINE Alu -30 146 32 746 232 0 0 chr12 20165269 20165411 -124117078 + AluJb SINE Alu 129 270 -42 1658 144 0 0 chr12 20165435 20165678 -124116811 - AluSx SINE Alu -49 263 21 1203 146 25 93 chr12 20165679 20165959 -124116530 + Tigger3(Golem) DNA MER2_type 2762 3022 -7 300 183 0 56 chr12 20166144 20166215 -124116274 + L2 LINE L2 3176 3242 -71 228 59 0 0 chr12 20166216 20166250 -124116239 - MER44D DNA MER2_type -114 491 458 684 205 0 0 chr12 20166251 20166368 -124116121 + FLAM_C SINE Alu 1 117 -16 2339 160 26 33 chr12 20166378 20166797 -124115692 - MER44D DNA MER2_type -134 471 1 236 254 15 0 chr12 20166797 20166864 -124115625 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 614 223 0 0 chr12 20166911 20167023 -124115466 - MIR SINE MIR -140 122 11 849 194 68 10 chr12 20167133 20167339 -124115150 - MER20 DNA MER1_type 0 219 2 2119 125 6 0 chr12 20167503 20167814 -124114675 + AluSq SINE Alu 1 313 0 2073 134 3 6 chr12 20168324 20168637 -124113852 + AluSx SINE Alu 1 312 0 216 0 0 0 chr12 20168940 20168964 -124113525 + (A)n Simple_repeat Simple_repeat 1 24 0 2267 120 0 0 chr12 20170266 20170575 -124111914 - AluSx SINE Alu -3 309 1 2176 116 0 10 chr12 20170735 20171036 -124111453 + AluSq SINE Alu 1 298 -15 212 333 48 16 chr12 20171481 20171607 -124110882 + MIR SINE MIR 79 208 -54 1897 148 0 10 chr12 20171739 20172029 -124110460 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr12 20172745 20172782 -124109707 + AT_rich Low_complexity Low_complexity 1 37 0 208 250 0 0 chr12 20173049 20173105 -124109384 + A-rich Low_complexity Low_complexity 1 56 0 453 248 50 30 chr12 20173300 20173502 -124108987 + L1MC/D LINE L1 5319 5524 -2284 215 245 0 0 chr12 20175217 20175270 -124107219 + T-rich Low_complexity Low_complexity 1 53 0 2045 133 3 16 chr12 20175743 20176059 -124106430 - AluSx SINE Alu 0 312 1 2035 116 3 36 chr12 20176269 20176572 -124105917 + AluJo SINE Alu 1 293 -19 1943 153 7 0 chr12 20176663 20176958 -124105531 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr12 20176976 20176999 -124105490 + AT_rich Low_complexity Low_complexity 1 23 0 207 100 0 0 chr12 20177149 20177179 -124105310 + (T)n Simple_repeat Simple_repeat 1 30 0 2108 102 3 14 chr12 20177769 20178062 -124104427 + AluSq SINE Alu 1 290 -23 180 0 0 0 chr12 20178065 20178085 -124104404 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2236 94 0 17 chr12 20179417 20179733 -124102756 - AluSx SINE Alu 0 311 1 879 181 114 5 chr12 20179891 20180084 -124102405 + L1PA16 LINE L1 5951 6164 -2 26 82 0 0 chr12 20180278 20180339 -124102150 + AT_rich Low_complexity Low_complexity 1 61 0 623 323 48 36 chr12 20180354 20180605 -124101884 - MIR SINE MIR -1 261 8 202 232 188 14 chr12 20180738 20180807 -124101682 - MIR SINE MIR -39 169 88 598 260 46 40 chr12 20180908 20181081 -124101408 - LTR16A LTR ERVL -14 436 263 190 200 25 0 chr12 20181081 20181121 -124101368 - L2 LINE L2 -5 3267 3227 642 266 92 14 chr12 20181290 20181497 -124100992 - MIR SINE MIR -1 261 39 449 321 61 41 chr12 20182404 20182650 -124099839 - L2 LINE L2 -98 3215 2965 25 0 0 0 chr12 20183144 20183169 -124099320 + AT_rich Low_complexity Low_complexity 1 25 0 417 240 41 16 chr12 20183169 20183290 -124099199 + L1MC4 LINE L1 7784 7907 -135 1380 158 116 0 chr12 20183395 20183497 -124098992 + AluJb SINE Alu 3 92 -220 240 59 0 0 chr12 20183497 20183531 -124098958 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1380 158 116 0 chr12 20183531 20183687 -124098802 + AluJb SINE Alu 92 291 -21 1748 174 0 0 chr12 20183700 20183975 -124098514 + AluSx SINE Alu 5 279 -33 25 0 0 0 chr12 20183975 20184000 -124098489 + AT_rich Low_complexity Low_complexity 1 25 0 2014 123 0 7 chr12 20184570 20184854 -124097635 + AluSx SINE Alu 1 282 -30 2325 82 14 0 chr12 20184876 20185167 -124097322 + AluSp SINE Alu 1 295 -18 2341 102 3 0 chr12 20186302 20186605 -124095884 + AluSx SINE Alu 3 306 -6 25 0 0 0 chr12 20186703 20186728 -124095761 + AT_rich Low_complexity Low_complexity 1 25 0 1846 157 31 0 chr12 20188423 20188716 -124093773 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr12 20188777 20188798 -124093691 + AT_rich Low_complexity Low_complexity 1 21 0 1587 193 7 7 chr12 20189651 20189974 -124092515 + AluJo SINE Alu 1 323 0 1914 141 3 10 chr12 20190099 20190403 -124092086 - AluSx SINE Alu -10 302 1 443 304 24 12 chr12 20191021 20191189 -124091300 - MIR SINE MIR -65 197 28 1563 193 7 14 chr12 20192677 20192973 -124089516 + AluJo SINE Alu 1 294 -18 232 353 146 27 chr12 20193027 20193288 -124089201 - L2 LINE L2 -17 3296 3005 1798 136 0 0 chr12 20193604 20193862 -124088627 + AluSx SINE Alu 2 259 -53 226 319 33 11 chr12 20193871 20193962 -124088527 - L2 LINE L2 -839 2475 2383 700 56 56 0 chr12 20193984 20194091 -124088398 + L1MA8 LINE L1 6169 6281 -10 299 304 31 0 chr12 20194112 20194261 -124088228 + L1ME LINE L1 5389 5549 -619 27 0 0 0 chr12 20195333 20195360 -124087129 + AT_rich Low_complexity Low_complexity 1 27 0 337 262 154 20 chr12 20196056 20196205 -124086284 + L3 LINE CR1 1064 1232 -345 2083 110 11 0 chr12 20196586 20196868 -124085621 + AluSx SINE Alu 12 296 -16 180 465 30 10 chr12 20196953 20197054 -124085435 - MIR3 SINE MIR -104 104 2 997 113 0 13 chr12 20197231 20197382 -124085107 - AluSg/x SINE Alu 0 312 164 588 129 148 0 chr12 20197505 20197606 -124084883 - FLAM_C SINE Alu -27 116 1 2009 118 70 0 chr12 20197994 20198281 -124084208 - AluSx SINE Alu -5 307 1 972 173 60 0 chr12 20198345 20198513 -124083976 + AluJb SINE Alu 121 298 -14 1810 145 28 3 chr12 20198571 20198861 -124083628 + AluSq SINE Alu 1 297 -16 2155 74 3 3 chr12 20199035 20199351 -124083138 - AluY SINE Alu 0 316 1 22 35 0 0 chr12 20199920 20199949 -124082540 + AT_rich Low_complexity Low_complexity 1 29 0 1308 104 0 6 chr12 20200183 20200443 -124082046 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr12 20200525 20200548 -124081941 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr12 20201141 20201168 -124081321 + AT_rich Low_complexity Low_complexity 1 27 0 198 33 33 0 chr12 20201324 20201354 -124081135 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2092 131 0 0 chr12 20201354 20201638 -124080851 - AluSx SINE Alu -4 308 1 458 305 86 0 chr12 20202057 20202208 -124080281 + FAM SINE Alu 2 165 -10 4676 191 89 13 chr12 20202741 20203892 -124078597 + Charlie1a DNA MER1_type 1 1239 -216 277 137 0 39 chr12 20203875 20203926 -124078563 + Charlie1a DNA MER1_type 1406 1454 -1 * 2194 120 7 0 chr12 20203954 20204255 -124078234 + AluSx SINE Alu 1 303 -9 1964 123 3 20 chr12 20204279 20204572 -124077917 - AluSx SINE Alu -24 288 1 2495 79 3 0 chr12 20205065 20205370 -124077119 + AluSx SINE Alu 1 306 -6 1882 104 48 11 chr12 20207179 20207497 -124074992 - AluSg SINE Alu 0 330 3 22 35 0 0 chr12 20208475 20208504 -124073985 + AT_rich Low_complexity Low_complexity 1 29 0 1983 141 0 7 chr12 20209392 20209697 -124072792 + AluSx SINE Alu 1 303 -9 202 182 0 0 chr12 20209697 20209730 -124072759 + polypurine Low_complexity Low_complexity 1 33 0 2215 122 0 0 chr12 20209925 20210220 -124072269 + AluSx SINE Alu 1 295 -17 24 53 0 0 chr12 20210246 20210284 -124072205 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr12 20210586 20210609 -124071880 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr12 20211502 20211557 -124070932 + AT_rich Low_complexity Low_complexity 1 55 0 2145 109 0 26 chr12 20213219 20213523 -124068966 + AluSx SINE Alu 1 296 -16 2102 124 3 3 chr12 20213534 20213832 -124068657 + AluSx SINE Alu 1 298 -14 2815 13 0 0 chr12 20214610 20214920 -124067569 + AluYb8 SINE Alu 1 310 -8 26 0 0 0 chr12 20215013 20215039 -124067450 + AT_rich Low_complexity Low_complexity 1 26 0 2032 101 28 3 chr12 20215193 20215479 -124067010 + AluSx SINE Alu 1 293 -19 192 97 0 0 chr12 20215668 20215699 -124066790 + (T)n Simple_repeat Simple_repeat 1 31 0 1572 73 0 0 chr12 20215747 20215938 -124066551 - AluSq SINE Alu -122 191 1 27 0 0 0 chr12 20215987 20216014 -124066475 + AT_rich Low_complexity Low_complexity 1 27 0 280 295 83 26 chr12 20216860 20217016 -124065473 + MIR SINE MIR 86 250 -12 22 56 0 0 chr12 20217674 20217710 -124064779 + AT_rich Low_complexity Low_complexity 1 36 0 2193 86 3 51 chr12 20218122 20218435 -124064054 + AluSp SINE Alu 1 298 -15 1876 130 0 4 chr12 20219697 20219966 -124062523 - AluSx SINE Alu -44 268 1 701 180 180 0 chr12 20219992 20220164 -124062325 - MER3 DNA MER1_type -6 203 1 2083 115 0 0 chr12 20220179 20220457 -124062032 - AluSx SINE Alu 0 312 35 1850 158 3 7 chr12 20220752 20221044 -124061445 + 7SLRNA srpRNA srpRNA 5 295 -25 1904 126 48 3 chr12 20221085 20221378 -124061111 - AluJb SINE Alu -6 306 1 1714 100 71 0 chr12 20221409 20221649 -124060840 + AluSq SINE Alu 1 257 -56 744 154 0 0 chr12 20222082 20222199 -124060290 + AluJb SINE Alu 1 117 -195 2208 103 7 0 chr12 20222550 20222840 -124059649 + AluSg SINE Alu 5 296 -14 2152 116 0 13 chr12 20222840 20223151 -124059338 + AluSp SINE Alu 1 307 -6 1314 106 0 6 chr12 20223176 20223355 -124059134 + AluSg/x SINE Alu 112 289 -21 214 234 0 0 chr12 20223857 20223904 -124058585 + (CGG)n Simple_repeat Simple_repeat 3 49 0 1996 130 3 3 chr12 20224457 20224749 -124057740 + AluSq SINE Alu 1 292 -21 201 276 0 41 chr12 20225193 20225291 -124057198 + A-rich Low_complexity Low_complexity 2 95 0 2097 120 0 46 chr12 20226031 20226356 -124056133 + AluSx SINE Alu 1 310 -2 2138 80 38 3 chr12 20226742 20227031 -124055458 + AluSx SINE Alu 3 301 -11 2254 107 0 0 chr12 20227608 20227898 -124054591 + AluSx SINE Alu 14 303 -9 836 157 64 7 chr12 20227902 20228042 -124054447 + AluJo SINE Alu 1 148 -164 11933 127 42 7 chr12 20228057 20228419 -124054070 - Tigger1 DNA MER2_type -82 2336 1988 1582 165 25 59 chr12 20228419 20228740 -124053749 + AluJo SINE Alu 1 310 -2 11933 127 42 7 chr12 20228740 20230403 -124052086 - Tigger1 DNA MER2_type -430 1988 242 1502 143 5 5 chr12 20230403 20230627 -124051862 + AluJo SINE Alu 44 267 -45 21 0 0 0 chr12 20230705 20230726 -124051763 + AT_rich Low_complexity Low_complexity 1 21 0 307 229 95 24 chr12 20230727 20230858 -124051631 + L1ME2 LINE L1 5992 6134 -28 26 0 0 0 chr12 20231129 20231155 -124051334 + AT_rich Low_complexity Low_complexity 1 26 0 1457 176 70 33 chr12 20234354 20234626 -124047863 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr12 20235191 20235214 -124047275 + (T)n Simple_repeat Simple_repeat 1 23 0 2166 110 14 0 chr12 20235910 20236202 -124046287 + AluSx SINE Alu 1 296 -16 25 75 0 32 chr12 20237712 20237805 -124044684 + AT_rich Low_complexity Low_complexity 1 90 0 1957 153 3 0 chr12 20238154 20238449 -124044040 + AluSx SINE Alu 1 296 -16 1920 138 9 34 chr12 20238621 20238941 -124043548 - AluSx SINE Alu 0 312 1 1544 174 17 51 chr12 20240139 20240432 -124042057 - AluJo SINE Alu -29 283 1 1803 129 76 0 chr12 20240512 20240775 -124041714 + AluSq SINE Alu 3 285 -28 2290 112 7 0 chr12 20240805 20241110 -124041379 + AluSx SINE Alu 1 307 -5 280 301 14 0 chr12 20241731 20241804 -124040685 - MIR SINE MIR -96 112 39 1693 177 32 0 chr12 20242380 20242662 -124039827 + AluJo SINE Alu 2 292 -20 2346 82 0 0 chr12 20242677 20242970 -124039519 + AluSg SINE Alu 1 293 -17 2181 92 7 0 chr12 20242999 20243333 -124039156 + AluSp SINE Alu 4 339 0 199 352 0 0 chr12 20243550 20243604 -124038885 + L2 LINE L2 3211 3264 -8 5221 123 43 18 chr12 20243841 20244901 -124037588 - L1PA16 LINE L1 0 6166 5108 2155 147 0 0 chr12 20244901 20245213 -124037276 - AluSx SINE Alu 0 312 1 7697 200 29 4 chr12 20245222 20245827 -124036662 - L1 LINE L1 -1114 5032 4443 360 0 0 0 chr12 20245827 20245867 -124036622 + (TG)n Simple_repeat Simple_repeat 2 41 0 7697 200 29 4 chr12 20245867 20247060 -124035429 - L1 LINE L1 -1703 4443 3190 1262 169 147 52 chr12 20247068 20247340 -124035149 + AluJb SINE Alu 6 303 -9 25 0 0 0 chr12 20247839 20247864 -124034625 + AT_rich Low_complexity Low_complexity 1 25 0 830 142 0 8 chr12 20248646 20248773 -124033716 - FLAM_C SINE Alu -7 126 1 1339 212 26 11 chr12 20249009 20249278 -124033211 + AluJb SINE Alu 1 273 -39 1639 158 91 0 chr12 20249285 20249550 -124032939 + AluJo SINE Alu 1 289 -23 753 174 0 56 chr12 20249733 20249894 -124032595 - FAM SINE Alu -2 47 1 261 157 182 91 chr12 20249905 20249950 -124032539 - L1ME3A LINE L1 -198 5972 5932 1669 167 51 0 chr12 20249950 20250225 -124032264 - AluJb SINE Alu -23 289 1 261 157 182 91 chr12 20250225 20250300 -124032189 - L1ME3A LINE L1 -238 5932 5841 1997 82 0 0 chr12 20250321 20250566 -124031923 + AluSp SINE Alu 50 294 -19 1854 128 0 44 chr12 20250566 20250864 -124031625 + AluSc SINE Alu 1 285 -24 2207 116 0 7 chr12 20250875 20251178 -124031311 - AluSg SINE Alu -9 301 1 789 155 0 165 chr12 20251970 20252099 -124030390 + AluJb SINE Alu 3 89 -223 360 0 0 0 chr12 20252099 20252139 -124030350 + (TA)n Simple_repeat Simple_repeat 2 41 0 789 155 0 165 chr12 20252139 20252209 -124030280 + AluJb SINE Alu 89 169 -143 180 0 0 0 chr12 20252253 20252273 -124030216 + (A)n Simple_repeat Simple_repeat 1 20 0 1932 136 13 13 chr12 20252293 20252602 -124029887 - AluJo SINE Alu -3 309 1 1744 123 3 58 chr12 20252671 20252964 -124029525 - AluSg SINE Alu 0 310 34 1519 166 0 0 chr12 20252965 20253200 -124029289 - AluSx SINE Alu -76 236 2 289 250 179 0 chr12 20254009 20254093 -124028396 - L3 LINE CR1 -118 1459 1361 1424 64 0 0 chr12 20254246 20254417 -124028072 - AluSp SINE Alu -2 311 141 232 211 44 111 chr12 20254502 20254540 -124027949 + MIR SINE MIR 120 159 -103 2302 109 13 0 chr12 20254540 20254843 -124027646 + AluSx SINE Alu 1 307 -5 232 211 44 111 chr12 20254843 20254894 -124027595 + MIR SINE MIR 159 203 -59 408 59 15 73 chr12 20255009 20255077 -124027412 + AluSp SINE Alu 76 139 -174 1730 100 12 0 chr12 20255078 20255318 -124027171 + AluSq SINE Alu 58 300 -13 431 233 47 47 chr12 20255347 20255476 -124027013 + MER3 DNA MER1_type 38 166 -43 736 182 29 112 chr12 20255481 20255607 -124026882 - AluJo/FRAM SINE Alu -21 291 181 1801 138 46 3 chr12 20255607 20255889 -124026600 + AluSx SINE Alu 1 294 -18 736 182 29 112 chr12 20255889 20255932 -124026557 - AluJo/FRAM SINE Alu -131 181 136 294 130 22 0 chr12 20255934 20255980 -124026509 + MER3 DNA MER1_type 157 203 -6 1006 133 7 0 chr12 20256024 20256174 -124026315 + AluSg/x SINE Alu 154 304 -8 231 91 61 0 chr12 20256238 20256271 -124026218 - MER58 DNA MER1_type -1 2419 2385 2266 110 0 16 chr12 20256292 20256610 -124025879 - AluSq SINE Alu 0 313 1 290 207 0 17 chr12 20256618 20256676 -124025813 - MER58 DNA MER1_type -2327 93 37 363 289 69 47 chr12 20256759 20256991 -124025498 + L1 LINE L1 4488 4724 -1422 475 261 62 12 chr12 20257018 20257179 -124025310 + MIR SINE MIR 89 257 -5 275 147 200 0 chr12 20257194 20257269 -124025220 + L1 LINE L1 4736 4825 -1321 5436 30 9 20 chr12 20257594 20258233 -124024256 + SVA Other Other 755 1386 0 1877 160 3 19 chr12 20258257 20258569 -124023920 + AluSx SINE Alu 1 307 -5 232 282 35 12 chr12 20258571 20258656 -124023833 + L1ME LINE L1 5390 5476 -645 1750 180 3 3 chr12 20259002 20259297 -124023192 - AluJb SINE Alu -17 295 1 1933 101 4 0 chr12 20259639 20259887 -124022602 + AluSx SINE Alu 1 249 -63 1025 136 51 11 chr12 20259887 20260064 -124022425 + AluSg/x SINE Alu 120 303 -7 24 0 0 0 chr12 20260503 20260527 -124021962 + AT_rich Low_complexity Low_complexity 1 24 0 1664 129 39 126 chr12 20260743 20261035 -124021454 - MER7A DNA MER2_type -2692 346 95 2096 125 10 0 chr12 20261035 20261331 -124021158 + AluSx SINE Alu 1 299 -13 1664 129 39 126 chr12 20261331 20261419 -124021070 - MER7A DNA MER2_type -2943 95 1 430 290 88 59 chr12 20261648 20261989 -124020500 - L1ME4a LINE L1 -269 5852 5502 1701 115 59 48 chr12 20262091 20262361 -124020128 + AluSx SINE Alu 1 273 -39 215 91 0 23 chr12 20262371 20262382 -124020107 + (TAAAAA)n Simple_repeat Simple_repeat 4 14 -32 2388 97 0 0 chr12 20262382 20262692 -124019797 + AluSx SINE Alu 1 310 -2 215 91 0 23 chr12 20262692 20262724 -124019765 + (TAAAAA)n Simple_repeat Simple_repeat 14 46 0 2109 118 10 3 chr12 20262746 20263042 -124019447 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr12 20263233 20263263 -124019226 + AT_rich Low_complexity Low_complexity 1 30 0 1605 127 71 19 chr12 20263622 20263890 -124018599 + AluJo SINE Alu 1 282 -30 38 0 0 0 chr12 20264632 20264670 -124017819 + AT_rich Low_complexity Low_complexity 1 38 0 2258 112 7 3 chr12 20265144 20265448 -124017041 - AluSx SINE Alu -7 305 1 184 151 38 75 chr12 20265601 20265654 -124016835 + MER5C DNA MER1_type 90 140 -184 432 262 90 0 chr12 20265889 20266034 -124016455 - MER46C DNA MER2_type -8 330 173 1221 117 6 6 chr12 20266063 20266243 -124016246 + AluSg/x SINE Alu 117 296 -14 1463 212 19 19 chr12 20266318 20266679 -124015810 - AluJb SINE Alu 0 312 3 573 92 0 0 chr12 20266891 20266967 -124015522 + AluSx SINE Alu 2 77 -235 231 36 0 0 chr12 20266969 20266997 -124015492 + (CAA)n Simple_repeat Simple_repeat 1 28 0 441 58 0 0 chr12 20267043 20267095 -124015394 + AluSx SINE Alu 82 133 -177 2087 123 0 3 chr12 20267096 20267388 -124015101 + AluSg SINE Alu 1 291 -19 233 231 224 20 chr12 20267506 20267653 -124014836 + L1MC4 LINE L1 7775 7951 -91 2042 104 26 23 chr12 20267750 20268059 -124014430 + AluSg SINE Alu 1 310 0 1584 138 106 4 chr12 20268221 20268496 -124013993 - AluJb SINE Alu -9 303 1 809 161 0 0 chr12 20268515 20268633 -124013856 + FLAM_C SINE Alu 1 118 -25 342 197 15 15 chr12 20268840 20268906 -124013583 + AluJb SINE Alu 213 278 -24 2029 99 3 27 chr12 20269086 20269380 -124013109 + AluSp SINE Alu 18 304 -9 1865 159 10 13 chr12 20269384 20269685 -124012804 + AluJb SINE Alu 1 300 -12 827 129 38 30 chr12 20269866 20269998 -124012491 - FLAM_C SINE Alu 0 133 1 1554 158 44 44 chr12 20270058 20270356 -124012133 - AluJb SINE Alu 0 312 15 2049 126 3 10 chr12 20270419 20270739 -124011750 - AluSx SINE Alu 0 312 1 2224 88 10 3 chr12 20270745 20271041 -124011448 - AluSp SINE Alu -15 298 1 2689 26 0 7 chr12 20271423 20271731 -124010758 - AluY SINE Alu -1 310 5 2417 68 0 7 chr12 20271768 20272064 -124010425 - AluY SINE Alu -17 294 1 1228 165 0 39 chr12 20272627 20272857 -124009632 - AluJo SINE Alu -7 305 85 2131 128 0 13 chr12 20273161 20273466 -124009023 + AluSx SINE Alu 1 301 -11 1682 182 19 16 chr12 20273515 20273823 -124008666 + AluJo SINE Alu 1 309 -3 619 159 37 9 chr12 20273829 20273936 -124008553 - Tigger2 DNA MER2_type -228 2490 2381 2304 89 20 0 chr12 20273939 20274241 -124008248 - AluSg SINE Alu -2 308 1 1971 129 41 7 chr12 20274534 20274828 -124007661 - AluSx SINE Alu -8 304 1 261 0 0 0 chr12 20274901 20274930 -124007559 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1755 134 0 39 chr12 20274938 20275222 -124007267 - AluJb SINE Alu -39 273 1 2464 58 0 22 chr12 20276964 20277276 -124005213 + AluY SINE Alu 1 305 -6 1267 157 51 13 chr12 20277332 20277567 -124004922 + AluJb SINE Alu 1 244 -68 1971 137 13 10 chr12 20277610 20277917 -124004572 + AluSx SINE Alu 4 311 -1 2063 105 11 21 chr12 20279752 20280037 -124002452 - AluSx SINE Alu -30 282 1 22 70 0 0 chr12 20280398 20280441 -124002048 + AT_rich Low_complexity Low_complexity 1 43 0 535 195 26 45 chr12 20280994 20281148 -124001341 - AluSg/x SINE Alu 0 310 160 2424 78 0 3 chr12 20281863 20282169 -124000320 + AluY SINE Alu 1 305 -6 515 329 0 22 chr12 20282618 20282755 -123999734 + MIR3 SINE MIR 11 144 -64 1610 249 133 53 chr12 20283708 20283869 -123998620 + L1M4c LINE L1 892 1039 -5345 2064 133 0 7 chr12 20283869 20284163 -123998326 - AluJo SINE Alu -18 294 3 1610 249 133 53 chr12 20284163 20284857 -123997632 + L1M4c LINE L1 1039 1816 -4568 477 219 123 0 chr12 20284973 20285087 -123997402 - MER58A DNA MER1_type 0 128 1 466 319 156 27 chr12 20285122 20285527 -123996962 - L3 LINE CR1 -477 1100 644 613 133 0 51 chr12 20285577 20285675 -123996814 + AluJ/FLAM SINE Alu 3 95 -217 1901 100 65 7 chr12 20285684 20285974 -123996515 - AluSx SINE Alu -1 311 5 1902 136 40 31 chr12 20285976 20286299 -123996190 - THE1B LTR MaLR -38 326 1 757 271 78 18 chr12 20286395 20286676 -123995813 + MLT1C LTR MaLR 168 465 -2 188 278 175 0 chr12 20286694 20286791 -123995698 - L2 LINE L2 -209 3104 2991 706 144 117 0 chr12 20287499 20287610 -123994879 + FLAM_A SINE Alu 4 127 -6 524 157 8 104 chr12 20287906 20288040 -123994449 + L2 LINE L2 3191 3311 -2 21 0 0 0 chr12 20288116 20288137 -123994352 + AT_rich Low_complexity Low_complexity 1 21 0 189 279 22 0 chr12 20288365 20288432 -123994057 - MIR SINE MIR -102 106 38 1898 152 14 0 chr12 20289706 20290002 -123992487 - AluJo SINE Alu -8 304 5 1592 156 17 21 chr12 20290765 20291053 -123991436 - MER1B DNA MER1_type -18 321 35 844 181 110 16 chr12 20291068 20291250 -123991239 - MER7A DNA MER2_type -149 197 1 193 354 0 0 chr12 20291260 20291308 -123991181 + L2 LINE L2 3210 3257 -15 2273 107 0 0 chr12 20291646 20291946 -123990543 + AluSq SINE Alu 6 305 -8 778 116 126 0 chr12 20292404 20292594 -123989895 + AluY SINE Alu 79 292 -19 424 293 89 19 chr12 20293271 20293541 -123988948 - L1MC4a LINE L1 -1871 5937 5649 301 234 70 63 chr12 20293577 20293661 -123988828 - L1MC4a LINE L1 -709 5461 5374 2189 125 3 0 chr12 20293661 20293966 -123988523 - AluSq SINE Alu -7 306 1 301 234 70 63 chr12 20293966 20294039 -123988450 - L1MC4a LINE L1 -796 5374 5303 467 116 0 109 chr12 20296171 20296309 -123986180 - AluSc SINE Alu -52 257 135 2135 112 34 0 chr12 20296313 20296608 -123985881 - AluSq SINE Alu -8 305 1 980 133 7 0 chr12 20296608 20296759 -123985730 - L1MC1 LINE L1 -162 6171 6020 2029 86 0 15 chr12 20296774 20297042 -123985447 + AluSq SINE Alu 35 298 -15 1275 230 14 0 chr12 20297042 20297338 -123985151 - L1MC4a LINE L1 -991 5155 4856 1208 213 32 29 chr12 20297369 20297646 -123984843 + AluJo SINE Alu 5 282 -30 2082 103 47 20 chr12 20297646 20297947 -123984542 - AluSg SINE Alu -1 309 1 531 271 16 0 chr12 20297953 20298082 -123984407 - FLAM_C SINE Alu -2 131 1 2218 67 3 3 chr12 20298314 20298630 -123983859 - AluY SINE Alu 0 316 1 669 274 12 75 chr12 20298900 20299036 -123983453 + MIR SINE MIR 15 158 -104 1916 158 20 10 chr12 20299036 20299339 -123983150 + AluJo SINE Alu 1 306 -6 669 274 12 75 chr12 20299339 20299399 -123983090 + MIR SINE MIR 158 194 -68 2196 134 0 0 chr12 20299399 20299706 -123982783 + AluSx SINE Alu 1 307 -5 669 274 12 75 chr12 20299706 20299760 -123982729 + MIR SINE MIR 194 250 -12 978 136 0 73 chr12 20299773 20299950 -123982539 + AluJb SINE Alu 149 312 0 269 150 0 0 chr12 20300037 20300077 -123982412 - MER2 DNA MER2_type 0 345 306 431 205 0 13 chr12 20300092 20300170 -123982319 - MER2 DNA MER2_type -247 98 22 1984 96 3 99 chr12 20300270 20300614 -123981875 - AluY SINE Alu 0 311 1 2387 101 0 0 chr12 20300641 20300939 -123981550 - AluSx SINE Alu -14 298 1 509 156 117 83 chr12 20301140 20301345 -123981144 + L1MC5 LINE L1 6921 7132 -829 1915 149 0 10 chr12 20301373 20301668 -123980821 + AluSx SINE Alu 1 292 -20 566 217 63 32 chr12 20301951 20302172 -123980317 + AluY SINE Alu 68 295 -16 350 217 85 0 chr12 20302348 20302454 -123980035 + L1MC5 LINE L1 7539 7653 -308 2187 91 3 7 chr12 20303171 20303467 -123979022 + AluSg1 SINE Alu 1 295 -14 1374 134 119 15 chr12 20303813 20304082 -123978407 - AluSg1 SINE Alu -12 297 1 2116 100 37 0 chr12 20304152 20304451 -123978038 - AluSx SINE Alu -2 310 1 2056 80 7 31 chr12 20304464 20304782 -123977707 - AluY SINE Alu 0 311 1 53 30 0 0 chr12 20304965 20305032 -123977457 + AT_rich Low_complexity Low_complexity 1 67 0 1336 181 19 37 chr12 20305105 20305375 -123977114 + AluJo SINE Alu 1 265 -47 1407 83 10 5 chr12 20305475 20305668 -123976821 + AluSp SINE Alu 98 291 -22 1923 157 0 0 chr12 20305878 20306202 -123976287 - AluSx SINE Alu 0 312 1 604 164 0 29 chr12 20306290 20306394 -123976095 + AluSq/x SINE Alu 26 126 -186 1102 194 57 4 chr12 20307556 20307804 -123974685 - AluJo SINE Alu 0 312 52 1760 139 26 35 chr12 20307864 20308174 -123974315 - AluJb SINE Alu -5 307 1 4688 101 24 24 chr12 20308195 20308869 -123973620 - L1PB2 LINE L1 -1 6150 5474 2096 83 31 0 chr12 20308869 20309157 -123973332 - AluSc SINE Alu -12 297 1 4688 101 24 24 chr12 20309157 20309202 -123973287 - L1PB2 LINE L1 -676 5475 5431 739 155 0 62 chr12 20309206 20309367 -123973122 - L1PB2 LINE L1 -787 5359 5209 1666 167 26 7 chr12 20309629 20309935 -123972554 - AluJb SINE Alu 0 312 1 1961 112 0 4 chr12 20309989 20310265 -123972224 + AluSx SINE Alu 25 299 -13 2041 90 38 0 chr12 20310266 20310554 -123971935 + AluSp SINE Alu 3 301 -12 609 98 19 2 chr12 20311123 20311219 -123971270 - LTR17 LTR ERV1 -354 360 247 2139 95 0 3 chr12 20311248 20311542 -123970947 + AluSc SINE Alu 1 293 -16 1990 115 3 3 chr12 20311542 20311829 -123970660 + AluSx SINE Alu 1 287 -25 1976 134 7 0 chr12 20311911 20312203 -123970286 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr12 20312734 20312755 -123969734 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 20312858 20312887 -123969602 + AT_rich Low_complexity Low_complexity 1 29 0 335 307 80 29 chr12 20313365 20313502 -123968987 - MIR3 SINE MIR -27 181 38 1873 113 0 65 chr12 20314237 20314429 -123968060 - AluSg SINE Alu 0 300 156 1886 94 0 11 chr12 20314429 20314583 -123967906 - AluSc SINE Alu -24 285 134 2353 77 0 3 chr12 20314583 20314893 -123967596 - AluY SINE Alu -2 309 1 1886 94 0 11 chr12 20314893 20315003 -123967486 - AluSc SINE Alu -175 134 24 1873 113 0 65 chr12 20315003 20315150 -123967339 - AluSg SINE Alu -144 156 1 1932 122 31 0 chr12 20315369 20315655 -123966834 + AluSx SINE Alu 4 298 -14 556 170 21 112 chr12 20316071 20316113 -123966376 - Charlie2 DNA MER1_type -13 2849 2805 1740 176 0 13 chr12 20316113 20316419 -123966070 + AluJb SINE Alu 1 302 -10 556 170 21 112 chr12 20316419 20316491 -123965998 - Charlie2 DNA MER1_type -57 2805 2728 2067 129 3 0 chr12 20316491 20316800 -123965689 + AluSq SINE Alu 1 310 -3 556 170 21 112 chr12 20316800 20316835 -123965654 - Charlie2 DNA MER1_type -134 2728 2717 1963 139 0 3 chr12 20316835 20317136 -123965353 - AluSx SINE Alu -12 300 1 556 170 21 112 chr12 20317136 20317172 -123965317 - Charlie2 DNA MER1_type -145 2717 2679 1955 126 0 7 chr12 20317172 20317480 -123965009 - AluSq SINE Alu 0 306 1 1977 95 74 0 chr12 20317856 20318139 -123964350 + AluSp SINE Alu 1 304 -9 1628 152 29 0 chr12 20318352 20318648 -123963841 - AluJb SINE Alu 0 304 1 23 54 0 0 chr12 20318881 20318918 -123963571 + AT_rich Low_complexity Low_complexity 1 37 0 611 293 60 28 chr12 20319309 20319446 -123963043 + MIR SINE MIR 6 156 -106 1689 171 109 50 chr12 20319446 20319850 -123962639 - MSTC LTR MaLR 0 428 1 611 293 60 28 chr12 20319850 20319961 -123962528 + MIR SINE MIR 156 262 0 23 33 0 0 chr12 20320040 20320070 -123962419 + AT_rich Low_complexity Low_complexity 1 30 0 2437 35 0 0 chr12 20320246 20320535 -123961954 + AluY SINE Alu 1 289 -22 728 252 129 31 chr12 20321058 20321344 -123961145 + L1ME4a LINE L1 5344 5657 -2151 1479 109 154 16 chr12 20321424 20321708 -123960781 + AluJb SINE Alu 4 321 0 395 139 139 0 chr12 20321926 20322005 -123960484 + MER21B LTR ERV1 1 90 -773 809 190 0 50 chr12 20322006 20322185 -123960304 - AluJo SINE Alu -24 288 119 357 300 42 0 chr12 20322196 20322316 -123960173 - L1M4 LINE L1 -2949 3197 3073 813 152 8 0 chr12 20322347 20322479 -123960010 - FLAM_C SINE Alu -2 141 9 2703 204 133 25 chr12 20322488 20323159 -123959330 + MER21B LTR ERV1 85 827 -36 250 234 16 16 chr12 20323172 20323236 -123959253 - MLT1J2 LTR MaLR -315 135 72 352 305 184 5 chr12 20323350 20323573 -123958916 + L1ME4a LINE L1 5736 5998 -123 2356 56 0 16 chr12 20324236 20324540 -123957949 - AluY SINE Alu -12 299 1 817 195 16 5 chr12 20325053 20325238 -123957251 - AluSg/x SINE Alu -1 311 125 346 128 13 103 chr12 20325388 20325466 -123957023 + L1MC1 LINE L1 6156 6226 -107 2761 121 22 75 chr12 20325468 20325580 -123956909 + LTR39 LTR ERV1 1 117 -666 2202 91 3 3 chr12 20325580 20325889 -123956600 + AluSc SINE Alu 1 309 0 2761 121 22 75 chr12 20325889 20325977 -123956512 + LTR39 LTR ERV1 117 208 -575 1894 114 27 7 chr12 20325977 20326275 -123956214 + AluSx SINE Alu 3 306 -6 2761 121 22 75 chr12 20326275 20326579 -123955910 + LTR39 LTR ERV1 208 479 -304 5247 238 49 32 chr12 20326592 20327242 -123955247 + L1PBa LINE L1 3 640 -6223 2147 66 11 0 chr12 20327242 20327529 -123954960 - AluY SINE Alu -21 290 1 5247 238 49 32 chr12 20327529 20329390 -123953099 + L1PBa LINE L1 640 2467 -4396 1327 169 0 99 chr12 20329390 20329547 -123952942 + AluJb SINE Alu 1 109 -221 2156 113 10 0 chr12 20329547 20329856 -123952633 + AluSx SINE Alu 1 312 0 1327 169 0 99 chr12 20329856 20330059 -123952430 + AluJb SINE Alu 109 330 0 1155 181 60 63 chr12 20330068 20330396 -123952093 + AluJb SINE Alu 5 302 0 5247 238 49 32 chr12 20330396 20330421 -123952068 + L1PBa LINE L1 1628 1651 -5212 2042 109 20 0 chr12 20330425 20330719 -123951770 + AluSg SINE Alu 1 300 -10 2019 104 0 14 chr12 20330721 20331010 -123951479 + AluSx SINE Alu 1 285 -27 315 0 0 0 chr12 20331010 20331045 -123951444 + (CA)n Simple_repeat Simple_repeat 2 36 0 2252 91 7 7 chr12 20331680 20331988 -123950501 + AluSq SINE Alu 1 308 -5 1369 194 0 38 chr12 20332544 20332858 -123949631 - AluJo SINE Alu -10 302 1 1419 152 35 48 chr12 20332924 20333085 -123949404 - AluSx SINE Alu -12 300 138 231 36 0 0 chr12 20333085 20333113 -123949376 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 243 0 0 0 chr12 20333112 20333139 -123949350 + (CA)n Simple_repeat Simple_repeat 2 28 0 1419 152 35 48 chr12 20333113 20333266 -123949223 - AluSx SINE Alu -174 138 16 960 179 0 0 chr12 20333598 20333771 -123948718 - FRAM SINE Alu -9 167 1 1728 130 56 18 chr12 20333775 20333939 -123948550 - AluSq SINE Alu -17 296 140 315 0 0 0 chr12 20333939 20333974 -123948515 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2091 93 4 0 chr12 20333974 20334254 -123948235 - AluSp SINE Alu -31 282 2 1728 130 56 18 chr12 20334254 20334373 -123948116 - AluSq SINE Alu -172 141 1 506 254 18 0 chr12 20334406 20334520 -123947969 + FLAM_C SINE Alu 3 118 -25 2183 87 0 10 chr12 20334572 20334871 -123947618 - AluSc SINE Alu -13 296 1 706 193 0 57 chr12 20334886 20335026 -123947463 - FLAM_C SINE Alu 0 133 2 1971 128 0 3 chr12 20335170 20335475 -123947014 - AluSx SINE Alu 0 304 1 2215 108 0 0 chr12 20335857 20336164 -123946325 + AluSg SINE Alu 1 307 -3 833 196 6 18 chr12 20336219 20336387 -123946102 - FRAM SINE Alu 0 166 1 215 226 194 0 chr12 20336492 20336554 -123945935 - L2 LINE L2 -5 3267 3194 182 304 101 0 chr12 20336652 20336731 -123945758 - L2 LINE L2 -214 3058 2972 2328 63 0 10 chr12 20336820 20337121 -123945368 - AluY SINE Alu -13 298 1 28 0 0 0 chr12 20337121 20337149 -123945340 + AT_rich Low_complexity Low_complexity 1 28 0 2064 129 0 0 chr12 20337165 20337475 -123945014 - AluSx SINE Alu -2 310 1 1422 139 24 103 chr12 20337571 20337910 -123944579 - L1MB5 LINE L1 -3 6171 5860 293 185 15 0 chr12 20337918 20337983 -123944506 + CT-rich Low_complexity Low_complexity 2 67 0 378 127 0 0 chr12 20338007 20338062 -123944427 - Alu SINE Alu -246 55 1 339 307 34 80 chr12 20338197 20338373 -123944116 - L1ME3A LINE L1 -242 5928 5761 2257 103 3 0 chr12 20338419 20338731 -123943758 + AluSp SINE Alu 1 313 0 1800 124 0 4 chr12 20338737 20339003 -123943486 + AluY SINE Alu 3 267 -44 1284 178 4 32 chr12 20339028 20339281 -123943208 + AluJo SINE Alu 46 291 -21 2277 84 3 0 chr12 20339292 20339589 -123942900 + AluSp SINE Alu 1 298 -15 762 241 24 12 chr12 20339593 20339763 -123942726 - MER5A DNA MER1_type -9 180 9 272 258 129 106 chr12 20339902 20340086 -123942403 - LTR33 LTR ERVL -152 369 176 2207 68 0 0 chr12 20340086 20340365 -123942124 - AluY SINE Alu -6 305 27 272 258 129 106 chr12 20340365 20340435 -123942054 - LTR33 LTR ERVL -345 176 109 2231 192 38 38 chr12 20340435 20340681 -123941808 + Charlie1b DNA MER1_type 1 246 -2515 880 104 0 22 chr12 20340681 20340816 -123941673 + FLAM_C SINE Alu 2 133 0 2231 192 38 38 chr12 20340816 20341090 -123941399 + Charlie1b DNA MER1_type 245 521 -2 308 233 105 0 chr12 20341092 20341178 -123941311 - LTR33 LTR ERVL -426 95 1 1076 183 13 22 chr12 20341180 20341404 -123941085 + AluJb SINE Alu 85 306 -6 285 29 0 0 chr12 20341467 20341501 -123940988 + (TG)n Simple_repeat Simple_repeat 1 34 0 2074 100 0 0 chr12 20341501 20341780 -123940709 - AluSq SINE Alu -33 280 2 2360 58 0 0 chr12 20341790 20342085 -123940404 - AluY SINE Alu -16 295 1 2247 91 3 0 chr12 20342116 20342413 -123940076 - AluSp SINE Alu -15 298 1 384 318 14 34 chr12 20342418 20342566 -123939923 - MER5C DNA MER1_type -169 155 11 771 142 122 14 chr12 20343073 20343221 -123939268 - AluJb SINE Alu -15 297 134 1308 152 171 12 chr12 20343221 20343478 -123939011 - AluSc SINE Alu -1 298 1 230 152 0 0 chr12 20343771 20343804 -123938685 + L2 LINE L2 3204 3236 -36 2068 149 159 69 chr12 20343808 20343866 -123938623 + MER39 LTR ERV1 1 52 -655 4138 130 13 3 chr12 20343866 20344495 -123937994 + MER41B LTR ERV1 1 635 0 2068 149 159 69 chr12 20344495 20344512 -123937977 + MER39 LTR ERV1 52 66 -641 1566 152 18 79 chr12 20344512 20344842 -123937647 - AluJb SINE Alu -2 310 1 2068 149 159 69 chr12 20344842 20345363 -123937126 + MER39 LTR ERV1 66 686 -21 963 186 145 9 chr12 20345363 20345584 -123936905 - AluSg SINE Alu -59 251 1 759 248 28 64 chr12 20345817 20346099 -123936390 + Charlie2 DNA MER1_type 37 308 -2554 2227 187 206 30 chr12 20346104 20346950 -123935539 + Charlie2 DNA MER1_type 1864 2858 -4 230 153 17 0 chr12 20347318 20347377 -123935112 + G-rich Low_complexity Low_complexity 3 62 0 195 69 0 0 chr12 20347603 20347632 -123934857 + (GGA)n Simple_repeat Simple_repeat 1 29 0 240 186 0 0 chr12 20347746 20347789 -123934700 + GA-rich Low_complexity Low_complexity 2 44 0 216 111 0 0 chr12 20347817 20347853 -123934636 + (CGG)n Simple_repeat Simple_repeat 1 36 0 195 261 29 14 chr12 20349052 20349121 -123933368 - L2 LINE L2 -1078 2236 2167 345 279 117 56 chr12 20349780 20349959 -123932530 - MIR SINE MIR -12 250 61 2132 82 3 3 chr12 20350032 20350323 -123932166 + AluSx SINE Alu 1 291 -21 1919 114 10 7 chr12 20351004 20351294 -123931195 - AluSx SINE Alu -13 299 9 541 108 0 0 chr12 20351343 20351417 -123931072 + AluS SINE Alu 2 75 -238 1787 161 0 7 chr12 20351526 20351825 -123930664 - AluSx SINE Alu -15 297 1 1781 170 0 0 chr12 20352228 20352517 -123929972 - AluJb SINE Alu -23 289 1 190 297 68 27 chr12 20353158 20353232 -123929257 - MIR3 SINE MIR 0 208 132 1376 166 147 4 chr12 20353896 20354039 -123928450 - AluJb SINE Alu -8 304 183 9396 41 1 0 chr12 20354039 20355952 -123926537 + L1PA4 LINE L1 4241 6154 -1 1376 166 147 4 chr12 20355952 20356073 -123926416 - AluJb SINE Alu -129 183 2 1639 97 0 9 chr12 20356239 20356455 -123926034 + AluSp SINE Alu 85 298 -15 1953 99 74 14 chr12 20356663 20356946 -123925543 + AluSx SINE Alu 1 300 -12 2163 106 0 20 chr12 20357008 20357347 -123925142 + AluSg SINE Alu 1 310 0 245 174 0 0 chr12 20359043 20359089 -123923400 + L2 LINE L2 3267 3312 -1 500 200 44 15 chr12 20359897 20360032 -123922457 + MIR SINE MIR 124 262 0 330 281 170 0 chr12 20360405 20360558 -123921931 + MER91A DNA MER1_type 18 196 0 2254 113 0 13 chr12 20360649 20360960 -123921529 - AluSc SINE Alu -2 307 1 183 42 0 0 chr12 20360968 20360992 -123921497 + (TTA)n Simple_repeat Simple_repeat 1 24 0 701 147 0 0 chr12 20360993 20361095 -123921394 - FLAM_C SINE Alu -20 123 22 883 98 8 0 chr12 20361106 20361238 -123921251 - MER41B LTR ERV1 0 635 503 3375 74 7 35 chr12 20361964 20362266 -123920223 - MER41A LTR ERV1 -106 448 162 2210 114 7 0 chr12 20362266 20362572 -123919917 - AluSg SINE Alu -2 308 1 3375 74 7 35 chr12 20362572 20362730 -123919759 - MER41A LTR ERV1 -392 162 1 640 241 76 0 chr12 20362862 20363020 -123919469 + MER96 DNA MER1_type 2 171 -4 1736 139 0 0 chr12 20363079 20363317 -123919172 + AluSx SINE Alu 59 296 -16 1790 151 30 26 chr12 20363416 20363720 -123918769 + AluSx SINE Alu 1 305 -7 639 0 0 0 chr12 20364039 20364110 -123918379 + (CAATA)n Simple_repeat Simple_repeat 1 71 0 1606 193 25 0 chr12 20364300 20364574 -123917915 + AluJb SINE Alu 1 281 -31 192 40 0 0 chr12 20364578 20364603 -123917886 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1748 90 5 0 chr12 20364794 20365017 -123917472 - AluSq SINE Alu -8 305 82 829 134 0 0 chr12 20365017 20365136 -123917353 - AluSx SINE Alu -12 300 182 717 148 0 0 chr12 20365136 20365244 -123917245 - AluSx SINE Alu -203 109 2 2204 123 0 3 chr12 20365256 20365564 -123916925 - AluY SINE Alu -4 307 1 2216 111 0 3 chr12 20365803 20366100 -123916389 - AluSx SINE Alu -16 296 1 2168 110 3 3 chr12 20366102 20366394 -123916095 - AluSc SINE Alu -17 292 1 2564 160 10 53 chr12 20366396 20366617 -123915872 + MER4E LTR ERV1 268 497 -282 1717 186 0 19 chr12 20366617 20366924 -123915565 - AluJb SINE Alu -11 301 1 2564 160 10 53 chr12 20366924 20367207 -123915282 + MER4E LTR ERV1 497 750 -29 576 93 0 0 chr12 20367216 20367291 -123915198 + AluJb SINE Alu 192 266 -46 2304 75 7 13 chr12 20367701 20368006 -123914483 + AluSc SINE Alu 1 303 -6 2115 111 0 0 chr12 20368041 20368321 -123914168 + AluSx SINE Alu 1 280 -32 2322 90 0 17 chr12 20368415 20368716 -123913773 - AluSq SINE Alu -11 302 7 2083 122 24 0 chr12 20368722 20369018 -123913471 - AluSg SINE Alu -7 303 1 189 346 110 8 chr12 20369074 20369201 -123913288 + L2 LINE L2 994 1133 -2181 2092 145 3 3 chr12 20369456 20369767 -123912722 + AluSx SINE Alu 1 311 -1 1081 224 127 0 chr12 20369792 20370037 -123912452 + AluSx SINE Alu 30 305 -7 1897 128 23 0 chr12 20370265 20370530 -123911959 + AluSg SINE Alu 6 276 -34 1317 112 0 0 chr12 20370893 20371063 -123911426 - AluSq SINE Alu -18 295 126 2461 89 0 3 chr12 20371173 20371486 -123911003 + AluSx SINE Alu 1 312 0 2111 139 0 3 chr12 20371625 20371928 -123910561 + AluSx SINE Alu 1 302 -10 494 182 88 54 chr12 20371931 20372079 -123910410 - MLT1J LTR MaLR -41 470 318 473 81 0 0 chr12 20372309 20372371 -123910118 + Alu SINE Alu 2 63 -255 1984 123 10 32 chr12 20372384 20372694 -123909795 + AluSx SINE Alu 1 303 -9 2110 128 7 0 chr12 20372837 20373134 -123909355 - AluJb SINE Alu -13 299 1 1799 178 111 111 chr12 20373447 20373521 -123908968 + MLT2B2 LTR ERVL 1 74 -441 2191 97 30 0 chr12 20373521 20373819 -123908670 + AluSx SINE Alu 1 307 -5 1799 178 111 111 chr12 20373819 20373996 -123908493 + MLT2B2 LTR ERVL 74 250 -265 1981 120 27 20 chr12 20373996 20374297 -123908192 + AluSx SINE Alu 1 303 -9 1799 178 111 111 chr12 20374297 20374551 -123907938 + MLT2B2 LTR ERVL 249 507 -8 494 86 0 0 chr12 20374803 20374873 -123907616 - AluSp/q SINE Alu -11 302 233 1741 146 11 7 chr12 20374873 20375153 -123907336 + AluJb SINE Alu 22 302 -10 321 231 103 79 chr12 20375156 20375359 -123907130 - MLT1J LTR MaLR -66 445 238 1976 135 3 10 chr12 20375427 20375724 -123906765 + AluSx SINE Alu 1 295 -17 1068 128 0 0 chr12 20376315 20376497 -123905992 + AluSg/x SINE Alu 135 316 0 2404 80 0 3 chr12 20377017 20377318 -123905171 - AluSx SINE Alu -12 300 1 414 256 60 23 chr12 20377329 20377462 -123905027 - HERVL LTR ERVL -2146 3508 3371 1707 194 0 10 chr12 20378098 20378397 -123904092 + AluJb SINE Alu 1 296 -16 1984 149 0 3 chr12 20378980 20379275 -123903214 + AluSx SINE Alu 2 295 -17 1304 214 31 21 chr12 20379932 20380134 -123902355 - MLT1A1 LTR MaLR -73 292 85 2567 111 37 0 chr12 20380134 20380484 -123902005 - THE1B LTR MaLR -1 363 1 1304 214 31 21 chr12 20380484 20380570 -123901919 - MLT1A1 LTR MaLR -280 85 1 256 238 32 0 chr12 20380919 20380982 -123901507 - MER91B DNA MER1_type -125 65 1 2177 96 0 0 chr12 20382201 20382482 -123900007 - AluSx SINE Alu -11 301 21 1568 164 96 11 chr12 20382491 20382771 -123899718 - AluJo SINE Alu -8 304 1 3909 173 6 7 chr12 20383156 20383855 -123898634 - L1PA16 LINE L1 -4 6162 5465 2175 88 4 0 chr12 20383855 20384128 -123898361 - AluSx SINE Alu -12 300 27 733 195 0 0 chr12 20384132 20384255 -123898234 - AluJb SINE Alu -188 124 2 2447 77 0 13 chr12 20384922 20385232 -123897257 - AluY SINE Alu -5 306 1 848 168 0 0 chr12 20385256 20385381 -123897108 - FLAM_C SINE Alu -18 125 1 2080 130 0 13 chr12 20385388 20385687 -123896802 - AluSx SINE Alu -17 295 1 1527 203 20 7 chr12 20385687 20385982 -123896507 - AluJo SINE Alu -13 299 1 1915 167 16 0 chr12 20386114 20386419 -123896070 + AluJo SINE Alu 1 310 -2 2032 128 45 0 chr12 20387197 20387485 -123895004 - AluSx SINE Alu -11 301 1 234 0 0 0 chr12 20387495 20387521 -123894968 + (T)n Simple_repeat Simple_repeat 1 26 0 374 278 136 0 chr12 20387937 20388099 -123894390 + MIR SINE MIR 79 262 0 385 328 146 23 chr12 20389115 20389457 -123893032 + L2 LINE L2 2503 2886 -428 308 281 52 21 chr12 20389575 20389671 -123892818 + L2 LINE L2 3132 3230 -42 313 281 177 44 chr12 20390055 20390258 -123892231 + L1ME LINE L1 5444 5652 -469 1574 196 24 0 chr12 20390260 20390556 -123891933 + AluJo SINE Alu 1 303 -9 470 187 98 41 chr12 20390582 20390705 -123891784 + FLAM_C SINE Alu 1 130 -3 244 282 107 0 chr12 20390857 20390960 -123891529 - L1MC/D LINE L1 -2008 5800 5687 1278 189 0 9 chr12 20391229 20391441 -123891048 - AluJo SINE Alu -100 212 3 2371 104 0 3 chr12 20391467 20391774 -123890715 - AluSx SINE Alu -6 306 1 688 156 0 0 chr12 20391852 20391961 -123890528 - AluJb SINE Alu -8 304 196 887 112 0 0 chr12 20391979 20392095 -123890394 - AluSq/x SINE Alu -197 116 1 230 215 15 31 chr12 20392800 20392865 -123889624 - MIR SINE MIR -60 148 85 1200 293 119 33 chr12 20392885 20393591 -123888898 + L2 LINE L2 577 1343 -1971 337 298 199 35 chr12 20393597 20393963 -123888526 + L2 LINE L2 2275 2700 -614 956 125 6 85 chr12 20393975 20394072 -123888417 - AluJo/FRAM SINE Alu -14 298 220 2172 123 0 7 chr12 20394072 20394373 -123888116 + AluSx SINE Alu 1 299 -13 956 125 6 85 chr12 20394373 20394451 -123888038 - AluJo/FRAM SINE Alu -92 220 137 389 254 25 8 chr12 20394453 20394571 -123887918 + L2 LINE L2 2691 2810 -504 666 241 21 7 chr12 20394578 20394723 -123887766 + MER58A DNA MER1_type 8 154 0 27 49 0 0 chr12 20394758 20394799 -123887690 + AT_rich Low_complexity Low_complexity 1 41 0 656 155 39 23 chr12 20395013 20395142 -123887347 - AluSq/x SINE Alu -181 132 2 326 238 111 35 chr12 20395143 20395315 -123887174 - Charlie7 DNA MER1_type -9 2603 2419 892 177 0 43 chr12 20396239 20396403 -123886086 + FRAM SINE Alu 7 163 -13 237 295 51 13 chr12 20396507 20396585 -123885904 - MIR SINE MIR -120 142 62 2078 126 0 10 chr12 20396699 20397001 -123885488 + AluSx SINE Alu 1 299 -13 485 178 19 19 chr12 20398058 20398165 -123884324 + L2 LINE L2 3201 3307 -6 2161 126 0 3 chr12 20398415 20398717 -123883772 + AluSq SINE Alu 1 301 -12 1761 186 0 7 chr12 20398720 20399016 -123883473 + AluJb SINE Alu 1 294 -18 183 42 0 0 chr12 20399161 20399185 -123883304 + (T)n Simple_repeat Simple_repeat 1 24 0 316 213 0 13 chr12 20399510 20399585 -123882904 - L1M4 LINE L1 -966 5180 5107 455 226 0 161 chr12 20399598 20399732 -123882757 - L1M4 LINE L1 -1095 5051 4954 1818 172 6 13 chr12 20399732 20400046 -123882443 + AluJb SINE Alu 1 312 0 455 226 0 161 chr12 20400046 20400097 -123882392 - L1M4 LINE L1 -1192 4954 4896 21 36 0 0 chr12 20400384 20400412 -123882077 + AT_rich Low_complexity Low_complexity 1 28 0 2101 106 6 42 chr12 20400453 20400765 -123881724 + AluSq SINE Alu 1 301 -12 407 250 106 0 chr12 20401285 20401389 -123881100 + L2 LINE L2 3199 3313 0 30 0 0 0 chr12 20402189 20402219 -123880270 + AT_rich Low_complexity Low_complexity 1 30 0 2004 154 0 0 chr12 20402219 20402511 -123879978 - AluJb SINE Alu -20 292 1 562 271 147 55 chr12 20402544 20402946 -123879543 + MLT1L LTR MaLR 164 602 -13 1070 98 0 0 chr12 20402950 20403093 -123879396 - AluSg/x SINE Alu 0 310 168 26 0 0 0 chr12 20403331 20403357 -123879132 + AT_rich Low_complexity Low_complexity 1 26 0 579 294 0 36 chr12 20403367 20403591 -123878898 - MIR SINE MIR -13 249 35 290 154 46 15 chr12 20403623 20403688 -123878801 - LTR67 LTR ERVL 0 557 491 1393 160 113 73 chr12 20403690 20404071 -123878418 - MSTD LTR MaLR 0 396 1 824 191 110 14 chr12 20404071 20404280 -123878209 - MSTD-int LTR MaLR 0 1735 1507 238 294 42 17 chr12 20404429 20404548 -123877941 - L1MC4 LINE L1 0 8042 7921 395 291 89 19 chr12 20404580 20404738 -123877751 + MER67C LTR ERV1 1 169 -541 251 278 8 30 chr12 20404739 20404872 -123877617 - L1MC4 LINE L1 -224 7818 7689 1663 159 52 4 chr12 20404922 20405046 -123877443 + AluJo SINE Alu 1 118 -194 279 0 0 0 chr12 20405046 20405077 -123877412 + (CA)n Simple_repeat Simple_repeat 2 32 0 1663 159 52 4 chr12 20405077 20405223 -123877266 + AluJo SINE Alu 118 284 -28 358 190 51 13 chr12 20405415 20405494 -123876995 - MLT1L LTR MaLR -8 607 526 757 189 0 7 chr12 20405497 20405640 -123876849 + FLAM_C SINE Alu 2 143 0 371 71 0 18 chr12 20405651 20405707 -123876782 + (GGAGAA)n Simple_repeat Simple_repeat 3 57 0 1847 159 0 3 chr12 20405712 20406002 -123876487 + AluJb SINE Alu 12 300 -12 373 269 0 28 chr12 20406167 20406275 -123876214 + LTR67 LTR ERVL 431 535 -22 207 0 0 0 chr12 20406744 20406767 -123875722 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 629 157 19 0 chr12 20407035 20407143 -123875346 + FLAM_A SINE Alu 24 133 -9 2078 128 0 10 chr12 20407144 20407440 -123875049 + AluSx SINE Alu 1 293 -19 306 271 42 80 chr12 20407847 20408109 -123874380 - LTR16B LTR ERVL -6 458 207 2342 75 3 3 chr12 20408150 20408442 -123874047 - AluSq SINE Alu -19 294 3 2509 69 0 7 chr12 20408455 20408759 -123873730 - AluY SINE Alu -9 302 1 27 0 0 0 chr12 20408759 20408786 -123873703 + AT_rich Low_complexity Low_complexity 1 27 0 2163 136 0 0 chr12 20408801 20409111 -123873378 - AluSx SINE Alu -2 310 1 635 180 21 113 chr12 20409212 20409406 -123873083 - L1MB4 LINE L1 -6 6174 5999 1928 112 0 22 chr12 20409514 20409783 -123872706 + AluSg SINE Alu 29 291 -19 341 265 53 29 chr12 20409933 20410103 -123872386 + L1MC4a LINE L1 5880 6053 -1755 22 0 0 0 chr12 20410520 20410542 -123871947 + AT_rich Low_complexity Low_complexity 1 22 0 2002 127 0 0 chr12 20410871 20411147 -123871342 + AluSx SINE Alu 1 276 -36 414 0 0 0 chr12 20411154 20411200 -123871289 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 1522 165 0 90 chr12 20412748 20413069 -123869420 + AluJo SINE Alu 3 294 -18 2226 109 13 0 chr12 20413162 20413466 -123869023 + AluY SINE Alu 3 310 -1 594 125 0 0 chr12 20413508 20413596 -123868893 + AluSp/q SINE Alu 217 304 -9 227 246 18 0 chr12 20413695 20413752 -123868737 + L1MC4 LINE L1 7793 7850 -192 273 89 22 0 chr12 20413972 20414017 -123868472 + Alu SINE Alu 256 301 0 2158 117 0 0 chr12 20414694 20414984 -123867505 - AluY SINE Alu -21 290 1 265 203 98 98 chr12 20415798 20415941 -123866548 - L2 LINE L2 -22 3291 3149 394 255 173 1 chr12 20415952 20416205 -123866284 - L2 LINE L2 -311 3002 2712 215 30 0 30 chr12 20416206 20416239 -123866250 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1350 190 32 53 chr12 20416242 20416526 -123865963 - AluJo SINE Alu -34 278 1 24 0 0 0 chr12 20416529 20416553 -123865936 + AT_rich Low_complexity Low_complexity 1 24 0 1826 159 0 10 chr12 20416554 20416844 -123865645 - AluSx SINE Alu -25 287 1 713 260 39 5 chr12 20416884 20417092 -123865397 - L1ME1 LINE L1 -3 6163 5949 1133 289 83 16 chr12 20417099 20417656 -123864833 - L2 LINE L2 -608 2706 2113 671 124 16 54 chr12 20418585 20418714 -123863775 + AluJ SINE Alu 7 130 -182 430 113 0 0 chr12 20418808 20418870 -123863619 + AluS SINE Alu 2 63 -255 2141 119 0 7 chr12 20418883 20419176 -123863313 + AluSx SINE Alu 1 291 -21 887 192 0 24 chr12 20419176 20419343 -123863146 + AluJ SINE Alu 134 296 -16 291 259 64 43 chr12 20419680 20419869 -123862620 + MIR SINE MIR 50 241 -21 2359 102 3 0 chr12 20420423 20420727 -123861762 + AluSp SINE Alu 1 305 -8 21 89 0 0 chr12 20420840 20420896 -123861593 + AT_rich Low_complexity Low_complexity 1 56 0 1582 102 0 0 chr12 20420897 20421135 -123861354 + AluY SINE Alu 76 313 0 2164 36 0 0 chr12 20421729 20421980 -123860509 - L1PA3 LINE L1 -1 6154 5904 5008 104 19 51 chr12 20422467 20422950 -123859539 + MER4E LTR ERV1 1 449 -330 2177 123 3 3 chr12 20422950 20423260 -123859229 - AluSg SINE Alu 0 310 1 5008 104 19 51 chr12 20423260 20423581 -123858908 + MER4E LTR ERV1 449 779 0 2126 125 0 13 chr12 20423630 20423933 -123858556 - AluSx SINE Alu -13 299 1 915 190 0 0 chr12 20423939 20424097 -123858392 - AluSq SINE Alu -25 288 131 1472 102 0 15 chr12 20424109 20424314 -123858175 - AluSg/x SINE Alu -6 304 103 2862 123 7 23 chr12 20424327 20424757 -123857732 - LTR10E LTR ERV1 -1 632 210 761 21 11 0 chr12 20424758 20424852 -123857637 - LTR10E LTR ERV1 -538 95 1 3489 283 10 22 chr12 20424916 20425910 -123856579 - HERVI LTR ERV1 -138 7647 6666 1160 59 15 109 chr12 20425915 20426117 -123856372 + AluY SINE Alu 1 183 -128 842 139 19 13 chr12 20426781 20426939 -123855550 - AluY SINE Alu 0 311 153 226 161 0 48 chr12 20426966 20427028 -123855461 + CT-rich Low_complexity Low_complexity 1 59 0 1815 170 23 10 chr12 20427028 20427334 -123855155 - AluSx SINE Alu -2 310 1 228 258 0 16 chr12 20427446 20427508 -123854981 - L1ME LINE L1 -537 5584 5524 935 198 119 34 chr12 20427548 20427841 -123854648 - L1ME1 LINE L1 -10 6156 5839 614 295 124 18 chr12 20428358 20428697 -123853792 - L2 LINE L2 -22 3291 2917 586 226 85 135 chr12 20428863 20429076 -123853413 - L2 LINE L2 -547 2767 2545 278 114 0 0 chr12 20429076 20429120 -123853369 + L1MC1 LINE L1 6285 6328 -5 586 226 85 135 chr12 20429120 20429345 -123853144 - L2 LINE L2 -769 2545 2310 1114 132 16 16 chr12 20429739 20429921 -123852568 + AluSx SINE Alu 2 183 -129 53 57 0 0 chr12 20430115 20430203 -123852286 + GC_rich Low_complexity Low_complexity 1 88 0 26 88 0 0 chr12 20430270 20430338 -123852151 + GC_rich Low_complexity Low_complexity 1 68 0 2607 210 32 19 chr12 20430487 20431102 -123851387 - L1PBa LINE L1 -6240 623 1 839 265 79 45 chr12 20431112 20431553 -123850936 - L1MC4a LINE L1 -1916 5892 5437 185 0 40 0 chr12 20431554 20431579 -123850910 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1245 139 19 100 chr12 20431581 20431840 -123850649 - AluSg SINE Alu -30 280 43 2398 68 0 17 chr12 20431861 20432156 -123850333 - AluSc SINE Alu -19 290 1 5148 230 26 24 chr12 20432160 20432189 -123850300 - L1PBa LINE L1 -5212 992 965 1137 180 62 69 chr12 20432189 20432506 -123849983 - AluJb SINE Alu 0 302 5 1444 169 0 99 chr12 20432515 20432708 -123849781 - AluJb SINE Alu 0 320 172 2305 110 10 0 chr12 20432708 20433017 -123849472 - AluSx SINE Alu 0 312 1 1444 169 0 99 chr12 20433017 20433174 -123849315 - AluJb SINE Alu -148 172 1 5148 230 26 24 chr12 20433174 20434898 -123847591 - L1PBa LINE L1 -5246 958 1 188 235 61 52 chr12 20435326 20435441 -123847048 - L2 LINE L2 -118 3195 3080 416 50 0 17 chr12 20435909 20435969 -123846520 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 2316 96 3 10 chr12 20435976 20436290 -123846199 - AluSq SINE Alu -1 312 1 218 245 137 20 chr12 20436461 20436563 -123845926 - L2 LINE L2 -3 3310 3197 2384 90 0 0 chr12 20436640 20436940 -123845549 + AluSx SINE Alu 1 300 -12 245 234 16 16 chr12 20437941 20438005 -123844484 + MLT1J2 LTR MaLR 72 135 -315 1471 236 85 55 chr12 20438050 20438586 -123843903 - MER21A LTR ERV1 -86 845 179 2166 131 6 10 chr12 20438909 20439222 -123843267 + AluSx SINE Alu 1 312 0 333 277 10 0 chr12 20439498 20439599 -123842890 - MIR SINE MIR -57 205 104 1661 162 27 40 chr12 20439600 20439896 -123842593 - AluJo SINE Alu -15 297 6 2062 117 28 0 chr12 20440271 20440562 -123841927 - AluSx SINE Alu -13 299 1 1751 153 57 33 chr12 20440621 20440987 -123841502 - THE1C LTR MaLR 0 375 1 633 140 15 88 chr12 20441465 20441601 -123840888 - FLAM_C SINE Alu 0 143 18 214 148 0 56 chr12 20442496 20442550 -123839939 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2009 159 0 0 chr12 20442679 20442987 -123839502 - AluJb SINE Alu -4 308 1 1150 193 15 36 chr12 20443015 20443289 -123839200 - LTR29 LTR ERV1 -218 404 137 537 30 0 0 chr12 20443329 20443396 -123839093 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 1597 177 3 18 chr12 20443398 20443681 -123838808 - AluJb SINE Alu -31 281 3 305 23 0 23 chr12 20443682 20443725 -123838764 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2129 122 0 0 chr12 20443725 20444011 -123838478 - AluSq SINE Alu -27 286 1 557 135 87 0 chr12 20444033 20444137 -123838352 + L1MB5 LINE L1 5403 5515 -663 602 144 99 0 chr12 20444137 20444232 -123838257 + L1MB5 LINE L1 6045 6166 -8 432 189 21 0 chr12 20444239 20444334 -123838155 - Charlie5 DNA MER1_type -2502 110 14 23 0 0 0 chr12 20444449 20444472 -123838017 + AT_rich Low_complexity Low_complexity 1 23 0 2033 152 0 0 chr12 20446560 20446862 -123835627 - AluSx SINE Alu -10 302 1 2242 112 0 3 chr12 20447277 20447572 -123834917 - AluSx SINE Alu -18 294 1 274 366 139 28 chr12 20447587 20447803 -123834686 - MIR SINE MIR 0 262 23 182 224 0 13 chr12 20447901 20447932 -123834557 + (TA)n Simple_repeat Simple_repeat 2 32 -44 1592 195 8 42 chr12 20447932 20448311 -123834178 + MER47A DNA MER2_type 1 366 0 182 224 0 13 chr12 20448311 20448355 -123834134 + (TA)n Simple_repeat Simple_repeat 32 76 0 191 61 30 0 chr12 20448829 20448862 -123833627 + (TG)n Simple_repeat Simple_repeat 1 34 0 2233 96 7 3 chr12 20449034 20449335 -123833154 - AluSc SINE Alu -7 302 1 2432 94 3 0 chr12 20449529 20449838 -123832651 + AluSp SINE Alu 1 310 -3 1915 124 0 11 chr12 20449847 20450121 -123832368 + AluY SINE Alu 3 273 -38 1396 174 4 32 chr12 20450138 20450391 -123832098 + AluJo SINE Alu 46 291 -21 2381 89 3 0 chr12 20450402 20450705 -123831784 + AluSp SINE Alu 1 304 -9 1083 138 0 6 chr12 20450709 20450897 -123831592 + AluSg/x SINE Alu 123 309 0 2378 69 0 14 chr12 20451409 20451699 -123830790 + AluY SINE Alu 1 286 -25 836 115 14 65 chr12 20451848 20451987 -123830502 + FLAM_C SINE Alu 2 133 0 1027 153 0 29 chr12 20452131 20452301 -123830188 - FRAM SINE Alu -11 165 1 204 227 236 45 chr12 20452340 20452450 -123830039 - MIR SINE MIR -112 150 20 2271 105 7 3 chr12 20452491 20452785 -123829704 + AluSx SINE Alu 1 295 -17 1919 168 0 13 chr12 20452861 20453177 -123829312 + AluJb SINE Alu 1 312 0 1952 144 4 0 chr12 20453900 20454203 -123828286 - AluSx SINE Alu 0 306 3 339 287 90 36 chr12 20454273 20454440 -123828049 - MER5B DNA MER1_type -1 177 2 652 258 184 12 chr12 20454649 20454975 -123827514 + L2 LINE L2 2932 3313 0 1996 146 30 9 chr12 20455045 20455381 -123827108 + MER2 DNA MER2_type 1 343 -1 2127 65 18 11 chr12 20455414 20455693 -123826796 + AluY SINE Alu 1 340 0 459 17 17 0 chr12 20455693 20455752 -123826737 + (TAAAA)n Simple_repeat Simple_repeat 3 180 0 2277 92 7 0 chr12 20455764 20456056 -123826433 + AluSp SINE Alu 1 294 -19 375 169 0 0 chr12 20456056 20456127 -123826362 + (TA)n Simple_repeat Simple_repeat 1 71 0 800 135 0 9 chr12 20457281 20457392 -123825097 + FLAM_C SINE Alu 2 111 -32 23 0 0 0 chr12 20457743 20457766 -123824723 + AT_rich Low_complexity Low_complexity 1 23 0 1710 155 11 18 chr12 20457774 20458058 -123824431 + AluJb SINE Alu 21 302 -10 793 206 0 7 chr12 20458131 20458267 -123824222 + AluSq/x SINE Alu 2 136 -177 2139 107 7 10 chr12 20458267 20458567 -123823922 + AluSg SINE Alu 1 299 -11 1345 232 99 43 chr12 20458605 20459019 -123823470 + MLT1E LTR MaLR 2 438 -155 1017 179 0 0 chr12 20459540 20459713 -123822776 - FRAM SINE Alu -9 167 1 1844 127 56 18 chr12 20459717 20459880 -123822609 - AluSq SINE Alu -18 295 140 360 0 0 0 chr12 20459880 20459920 -123822569 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2239 82 4 0 chr12 20459920 20460200 -123822289 - AluSp SINE Alu -31 282 2 1844 127 56 18 chr12 20460200 20460319 -123822170 - AluSq SINE Alu -172 141 1 551 254 18 0 chr12 20460352 20460466 -123822023 + FLAM_C SINE Alu 3 118 -25 2383 90 3 0 chr12 20460518 20460817 -123821672 - AluSx SINE Alu -12 300 1 1939 203 46 22 chr12 20460935 20461014 -123821475 + L1M4 LINE L1 4713 4789 -1357 1366 192 29 98 chr12 20461014 20461400 -123821089 + MLT1A1 LTR MaLR 5 363 -2 1939 203 46 22 chr12 20461400 20461778 -123820711 + L1M4 LINE L1 4789 5181 -965 1168 133 106 0 chr12 20461805 20461993 -123820496 - AluSg/x SINE Alu -31 281 74 220 323 182 0 chr12 20463289 20463388 -123819101 - MIR SINE MIR -72 190 74 6422 143 93 98 chr12 20463655 20464235 -123818254 - L1MCa LINE L1 -4502 1924 1343 385 123 31 0 chr12 20464235 20464300 -123818189 + MADE1 DNA Mariner 1 67 -13 6422 143 93 98 chr12 20464300 20464696 -123817793 - L1MCa LINE L1 -5083 1343 946 2101 128 20 0 chr12 20464696 20465001 -123817488 + AluSq SINE Alu 1 311 -2 6422 143 93 98 chr12 20465001 20465628 -123816861 - L1MCa LINE L1 -5480 946 109 1766 181 0 10 chr12 20465628 20465926 -123816563 + AluJb SINE Alu 2 296 -16 6422 143 93 98 chr12 20465926 20466015 -123816474 - L1MCa LINE L1 -6317 109 21 216 152 0 43 chr12 20466368 20466414 -123816075 + T-rich Low_complexity Low_complexity 2 45 0 185 255 39 0 chr12 20466787 20466838 -123815651 + L2 LINE L2 3181 3233 -80 402 185 0 4 chr12 20467318 20467389 -123815100 + MER5A DNA MER1_type 38 96 -82 1255 190 31 19 chr12 20467394 20467652 -123814837 - AluJo SINE Alu -7 305 45 228 306 0 0 chr12 20467655 20467717 -123814772 + MER5A DNA MER1_type 128 189 0 250 319 178 6 chr12 20467887 20468044 -123814445 - MIR SINE MIR -31 231 48 1830 94 8 4 chr12 20468335 20468590 -123813899 - AluY SINE Alu -9 302 47 408 291 97 112 chr12 20468715 20469169 -123813320 - L2 LINE L2 0 3272 2826 1123 137 6 6 chr12 20469175 20469350 -123813139 - MER89 LTR ERV1 0 559 385 1668 164 3 17 chr12 20469363 20469650 -123812839 + AluJb SINE Alu 2 284 -28 1785 175 16 6 chr12 20469651 20469966 -123812523 + MER89 LTR ERV1 242 559 0 185 174 65 0 chr12 20469986 20470032 -123812457 + L2 LINE L2 2606 2654 -660 1080 193 8 42 chr12 20470240 20470499 -123811990 + LTR16C LTR ERVL 233 482 -9 2052 120 0 17 chr12 20470994 20471295 -123811194 - AluSq SINE Alu -17 296 1 1802 171 3 0 chr12 20471297 20471590 -123810899 - AluJb SINE Alu -18 294 1 22 79 0 0 chr12 20471624 20471662 -123810827 + AT_rich Low_complexity Low_complexity 1 38 0 371 110 50 0 chr12 20471782 20471855 -123810634 - L1PB4 LINE L1 -291 5865 5799 341 113 38 0 chr12 20471855 20471908 -123810581 + LTR24B LTR ERV1 517 571 -5 435 241 64 80 chr12 20471976 20472225 -123810264 - L1MC5 LINE L1 -457 7504 7260 609 250 91 27 chr12 20472329 20472549 -123809940 - L1MC5 LINE L1 -728 7233 7000 854 174 0 14 chr12 20472618 20472762 -123809727 - FRAM SINE Alu 0 40 1 479 243 33 55 chr12 20472766 20472947 -123809542 - L1MC4 LINE L1 -1000 7042 6866 800 136 21 21 chr12 20473040 20473180 -123809309 - L1ME LINE L1 -687 5475 5336 636 120 11 0 chr12 20473180 20473272 -123809217 + AluSg/x SINE Alu 204 296 -14 251 123 0 70 chr12 20473272 20473329 -123809160 - L1ME LINE L1 -998 5346 5294 207 0 0 0 chr12 20473400 20473423 -123809066 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 264 224 104 0 chr12 20473425 20473492 -123808997 - HsTC2 DNA Tc2 -1820 78 5 2468 80 0 0 chr12 20474039 20474340 -123808149 - AluY SINE Alu -10 301 1 609 130 120 0 chr12 20474643 20474751 -123807738 - MLT1B LTR MaLR -77 313 193 1910 88 0 8 chr12 20474879 20475128 -123807361 + MER1B DNA MER1_type 133 339 0 680 157 19 50 chr12 20475264 20475423 -123807066 - LTR37B LTR ERV1 0 468 315 2802 177 21 23 chr12 20475435 20475950 -123806539 + MLT2B3 LTR ERVL 1 514 -40 273 163 20 0 chr12 20475974 20476023 -123806466 + MLT2C2 LTR ERVL 407 456 -8 4441 127 55 24 chr12 20476071 20476697 -123805792 + Tigger3b DNA MER2_type 1 655 -2373 2337 100 3 0 chr12 20476697 20476996 -123805493 - AluSg SINE Alu -10 300 1 4441 127 55 24 chr12 20476996 20477110 -123805379 + Tigger3b DNA MER2_type 655 764 -467 1258 139 19 14 chr12 20477117 20477326 -123805163 + AluJo SINE Alu 85 294 -18 1424 124 5 5 chr12 20477347 20477556 -123804933 + AluJb SINE Alu 89 297 -15 940 115 47 0 chr12 20477576 20477724 -123804765 + Tigger3b DNA MER2_type 778 932 -299 701 155 148 0 chr12 20477764 20477906 -123804583 + LTR44 LTR ERV1 26 188 -331 237 140 18 35 chr12 20477936 20477993 -123804496 + LTR44 LTR ERV1 270 325 -194 936 285 121 31 chr12 20478690 20479212 -123803277 - Charlie7 DNA MER1_type -2036 576 8 256 170 0 21 chr12 20479416 20479463 -123803026 + MER92B LTR ERV1 3 48 -588 1934 123 33 0 chr12 20479471 20479591 -123802898 + AluSg SINE Alu 4 119 -191 234 0 0 0 chr12 20479591 20479617 -123802872 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 1934 123 33 0 chr12 20479617 20479772 -123802717 + AluSg SINE Alu 119 288 -22 2196 128 0 0 chr12 20479779 20480076 -123802413 + AluSx SINE Alu 1 297 -15 2146 97 23 16 chr12 20480088 20480398 -123802091 + AluSp SINE Alu 1 312 -1 2258 99 0 13 chr12 20480428 20480763 -123801726 + AluY SINE Alu 1 311 0 396 213 12 0 chr12 20480879 20480959 -123801530 + MER92B LTR ERV1 57 137 -499 447 216 18 63 chr12 20480987 20481098 -123801391 + MER92B LTR ERV1 134 239 -397 301 161 86 25 chr12 20481485 20481566 -123800923 + L1MC4 LINE L1 6855 6940 -1102 928 255 111 36 chr12 20481582 20482064 -123800425 + L1MC4 LINE L1 7120 7738 -304 1566 156 85 0 chr12 20482064 20482334 -123800155 + AluSx SINE Alu 1 293 -19 928 255 111 36 chr12 20482334 20482518 -123799971 + L1MC4 LINE L1 7738 7907 -135 6078 125 42 25 chr12 20482525 20483873 -123798616 + L1MA6 LINE L1 4937 6294 -6 23 0 0 0 chr12 20484441 20484464 -123798025 + AT_rich Low_complexity Low_complexity 1 23 0 2285 88 24 0 chr12 20484592 20484886 -123797603 + AluSx SINE Alu 1 301 -11 921 233 0 0 chr12 20484886 20485062 -123797427 + AluJb SINE Alu 134 309 -3 2299 103 0 0 chr12 20485620 20485922 -123796567 + AluSx SINE Alu 1 302 -10 1078 264 43 65 chr12 20486201 20486959 -123795530 + L1MC/D LINE L1 4698 5437 -743 21 36 0 0 chr12 20487014 20487042 -123795447 + AT_rich Low_complexity Low_complexity 1 28 0 2205 120 0 17 chr12 20487052 20487353 -123795136 - AluSx SINE Alu -16 296 1 1866 154 3 20 chr12 20487764 20488069 -123794420 - AluJb SINE Alu -12 300 1 498 193 111 22 chr12 20490782 20490883 -123791606 + MER58B DNA MER1_type 193 310 -2110 2316 140 17 6 chr12 20490883 20491240 -123791249 + MER46B DNA MER2_type 1 236 0 498 193 111 22 chr12 20491240 20491273 -123791216 + MER58B DNA MER1_type 310 339 -2 312 27 0 0 chr12 20491568 20491605 -123790884 + (CA)n Simple_repeat Simple_repeat 2 38 0 604 179 0 19 chr12 20491656 20491762 -123790727 - FRAM SINE Alu -4 172 69 1930 142 0 0 chr12 20492138 20492419 -123790070 + AluSq SINE Alu 1 281 -32 545 126 262 39 chr12 20492528 20492631 -123789858 + FLAM_C SINE Alu 3 128 -5 1005 200 39 18 chr12 20493032 20493263 -123789226 + L1MB3 LINE L1 5900 6133 -50 1436 172 61 4 chr12 20493263 20493524 -123788965 - AluJb SINE Alu -12 300 25 1971 127 3 59 chr12 20493621 20493945 -123788544 + AluSx SINE Alu 2 307 -5 1695 145 4 11 chr12 20494061 20494330 -123788159 + AluSq SINE Alu 24 290 -23 2182 112 0 0 chr12 20494487 20494783 -123787706 + AluY SINE Alu 1 296 -15 2170 94 0 42 chr12 20494789 20495096 -123787393 + AluSg1 SINE Alu 1 294 -15 1323 192 63 15 chr12 20495229 20495500 -123786989 - AluJb SINE Alu -28 284 1 2434 79 0 0 chr12 20495909 20496212 -123786277 + AluY SINE Alu 1 303 -8 237 229 71 14 chr12 20496408 20496478 -123786011 + L1MC/D LINE L1 5826 5899 -1909 425 282 92 7 chr12 20497535 20497677 -123784812 - MER5A DNA MER1_type 0 189 36 1267 188 19 0 chr12 20498803 20499016 -123783473 + AluJb SINE Alu 87 303 -9 805 164 14 36 chr12 20499027 20499167 -123783322 + FLAM_C SINE Alu 5 141 -2 2980 221 33 6 chr12 20499169 20499482 -123783007 + L1 LINE L1 4084 4387 -1759 285 29 0 0 chr12 20499482 20499516 -123782973 + (CA)n Simple_repeat Simple_repeat 2 35 0 2980 221 33 6 chr12 20499516 20499893 -123782596 + L1 LINE L1 4387 4793 -1353 2175 107 3 7 chr12 20499896 20500195 -123782294 + AluSp SINE Alu 1 298 -15 2103 107 0 4 chr12 20500226 20500533 -123781956 + AluSc SINE Alu 1 306 0 253 143 24 0 chr12 20500556 20500598 -123781891 - Alu SINE Alu -9 292 250 1668 138 24 71 chr12 20501278 20501467 -123781022 - AluJb SINE Alu 0 307 137 2480 63 0 3 chr12 20501467 20501769 -123780720 - AluY SINE Alu -10 301 1 1668 138 24 71 chr12 20501769 20501900 -123780589 - AluJb SINE Alu -170 137 1 2098 141 0 13 chr12 20502022 20502327 -123780162 - AluSx SINE Alu -11 301 1 225 203 106 114 chr12 20502536 20502633 -123779856 + MER112 DNA MER1_type 38 134 -126 2442 73 0 19 chr12 20502633 20502950 -123779539 - AluY SINE Alu 0 311 1 2331 75 34 0 chr12 20502952 20503244 -123779245 - AluSp SINE Alu -11 302 1 1649 195 10 3 chr12 20503245 20503548 -123778941 - AluJo SINE Alu -7 305 1 225 203 106 114 chr12 20503548 20503568 -123778921 + MER112 DNA MER1_type 134 159 -101 680 214 0 0 chr12 20504147 20504259 -123778230 + AluJo/FLAM SINE Alu 4 115 -187 2334 54 0 74 chr12 20504262 20504598 -123777891 + AluY SINE Alu 1 311 0 525 58 0 0 chr12 20504600 20504669 -123777820 - LTR9B LTR ERV1 -575 69 1 530 167 11 0 chr12 20504669 20504759 -123777730 + MER67C LTR ERV1 270 360 -350 1830 173 10 19 chr12 20504759 20505072 -123777417 + AluJo SINE Alu 1 310 -2 227 65 0 0 chr12 20505100 20505131 -123777358 + MER67C LTR ERV1 342 372 -338 1224 117 0 6 chr12 20505140 20505319 -123777170 + MER41A LTR ERV1 1 178 -376 571 128 0 0 chr12 20506869 20507178 -123775311 + AluSx SINE Alu 2 310 0 394 111 0 0 chr12 20507178 20507241 -123775248 + AluSp/q SINE Alu 236 298 -5 189 159 48 0 chr12 20508081 20508144 -123774345 + A-rich Low_complexity Low_complexity 1 66 0 919 278 80 22 chr12 20508370 20508819 -123773670 - L1PBa LINE L1 -6386 477 3 2758 117 22 75 chr12 20508832 20509136 -123773353 - LTR39 LTR ERV1 -304 479 160 1999 115 27 7 chr12 20509136 20509432 -123773057 - AluSx SINE Alu -8 304 3 2758 117 22 75 chr12 20509432 20509520 -123772969 - LTR39 LTR ERV1 -623 160 117 2331 91 3 3 chr12 20509520 20509829 -123772660 - AluSc SINE Alu 0 309 1 2758 117 22 75 chr12 20509829 20509941 -123772548 - LTR39 LTR ERV1 -666 117 1 352 138 17 0 chr12 20509943 20510001 -123772488 - L1MC1 LINE L1 -107 6226 6168 1069 148 25 31 chr12 20510016 20510212 -123772277 - AluSc SINE Alu -15 294 100 534 136 12 0 chr12 20510213 20510294 -123772195 - AluSc SINE Alu -52 257 176 4231 164 87 53 chr12 20510542 20511131 -123771358 + L1PB2 LINE L1 4237 4804 -1347 2148 123 0 0 chr12 20511131 20511423 -123771066 + AluSx SINE Alu 11 302 -10 4231 164 87 53 chr12 20511423 20512586 -123769903 + L1PB2 LINE L1 4804 6052 -99 517 122 11 0 chr12 20512686 20512776 -123769713 + AluSp/q SINE Alu 222 312 -1 1474 194 0 38 chr12 20513329 20513643 -123768846 - AluJo SINE Alu -10 302 1 1889 128 37 24 chr12 20513712 20514009 -123768480 - AluSx SINE Alu -11 301 1 2264 95 0 3 chr12 20514009 20514303 -123768186 - AluSc SINE Alu -16 293 1 604 98 19 2 chr12 20514332 20514428 -123768061 + LTR17 LTR ERV1 247 360 -354 54 16 0 0 chr12 20515295 20515356 -123767133 + AT_rich Low_complexity Low_complexity 1 61 0 1499 178 31 34 chr12 20515422 20515715 -123766774 + AluJb SINE Alu 4 295 -17 1891 144 11 0 chr12 20515858 20516143 -123766346 + AluSx SINE Alu 13 300 -12 531 150 20 0 chr12 20517078 20517178 -123765311 + AluJb SINE Alu 199 300 -12 1713 187 3 7 chr12 20517304 20517604 -123764885 + AluJb SINE Alu 14 312 0 2237 114 3 0 chr12 20517604 20517902 -123764587 + AluSx SINE Alu 1 300 -12 316 119 45 0 chr12 20517902 20517969 -123764520 + G-rich Low_complexity Low_complexity 3 72 0 278 303 30 20 chr12 20517973 20518072 -123764417 - Charlie8 DNA MER1_type -2197 220 121 311 294 27 59 chr12 20518363 20518550 -123763939 - L3 LINE CR1 -72 1505 1325 2411 80 0 0 chr12 20518911 20519210 -123763279 + AluY SINE Alu 1 299 -12 1697 182 7 0 chr12 20519490 20519781 -123762708 - AluSx SINE Alu -16 296 4 186 191 0 0 chr12 20520090 20520132 -123762357 + C-rich Low_complexity Low_complexity 1 42 0 180 176 0 0 chr12 20520146 20520180 -123762309 + C-rich Low_complexity Low_complexity 1 34 0 1379 141 200 108 chr12 20520426 20520716 -123761773 + MER4A LTR ERV1 261 594 -70 1854 132 4 21 chr12 20520716 20520997 -123761492 + AluSx SINE Alu 20 295 -17 1379 141 200 108 chr12 20520997 20521076 -123761413 + MER4A LTR ERV1 594 664 0 2088 101 42 0 chr12 20521208 20521494 -123760995 + AluSq SINE Alu 1 298 -15 523 249 120 17 chr12 20521585 20521826 -123760663 - MER34B LTR ERV1 -122 443 178 742 124 34 22 chr12 20521895 20522073 -123760416 + CT-rich Low_complexity Low_complexity 1 180 0 386 158 37 37 chr12 20522076 20522158 -123760331 - MER34B LTR ERV1 -483 82 1 34 42 0 0 chr12 20522729 20522777 -123759712 + AT_rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr12 20523495 20523530 -123758959 + AT_rich Low_complexity Low_complexity 1 35 0 426 288 8 16 chr12 20524032 20524157 -123758332 + FRAM SINE Alu 3 126 -40 1924 147 3 3 chr12 20524542 20524835 -123757654 + AluSx SINE Alu 18 310 -2 486 287 77 40 chr12 20525254 20525526 -123756963 - L2 LINE L2 0 3313 3032 * 658 197 87 16 chr12 20525522 20525705 -123756784 - L2 LINE L2 -410 2904 2709 2112 114 0 10 chr12 20525913 20526210 -123756279 + AluSq SINE Alu 1 294 -19 21 0 0 0 chr12 20526210 20526231 -123756258 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr12 20526921 20526961 -123755528 + GC_rich Low_complexity Low_complexity 1 40 0 25 75 0 0 chr12 20528561 20528614 -123753875 + GC_rich Low_complexity Low_complexity 1 53 0 2199 114 0 3 chr12 20528781 20529070 -123753419 - AluSx SINE Alu -24 288 1 908 232 46 8 chr12 20529353 20529590 -123752899 - AluJo SINE Alu -65 247 2 2055 141 7 3 chr12 20529998 20530302 -123752187 - AluSx SINE Alu -7 305 1 430 120 67 0 chr12 20530789 20530864 -123751625 - MADE1 DNA Mariner 0 80 1 400 196 8 42 chr12 20530960 20531078 -123751411 - AluJ/FRAM SINE Alu -8 294 217 419 231 37 9 chr12 20531262 20531370 -123751119 - AluSq/x SINE Alu -201 112 2 2031 126 13 0 chr12 20531592 20531893 -123750596 - AluSg SINE Alu -2 308 4 1870 152 14 14 chr12 20532241 20532537 -123749952 - AluJo SINE Alu -16 296 1 439 150 12 0 chr12 20533455 20533535 -123748954 + AluS SINE Alu 229 309 0 1807 153 27 17 chr12 20533745 20534039 -123748450 + AluSq SINE Alu 2 298 -15 1968 95 74 14 chr12 20534247 20534530 -123747959 + AluSx SINE Alu 1 300 -12 2198 77 23 7 chr12 20534592 20534891 -123747598 + AluSc SINE Alu 1 304 -5 743 205 29 0 chr12 20535529 20535700 -123746789 - L1M4 LINE L1 -1115 5031 4856 1222 224 29 25 chr12 20535731 20536008 -123746481 + AluJo SINE Alu 5 282 -30 2004 113 50 20 chr12 20536008 20536310 -123746179 - AluSx SINE Alu -1 311 1 1932 131 7 3 chr12 20536334 20536640 -123745849 - AluSp SINE Alu 0 307 1 23 54 0 0 chr12 20536873 20536910 -123745579 + AT_rich Low_complexity Low_complexity 1 37 0 385 282 50 33 chr12 20537301 20537438 -123745051 + MIR SINE MIR 6 148 -114 1666 170 109 52 chr12 20537438 20537843 -123744646 - MSTC LTR MaLR 0 428 1 385 282 50 33 chr12 20537843 20537886 -123744603 + MIR SINE MIR 148 189 -73 1084 128 0 0 chr12 20538008 20538156 -123744333 + AluSg/x SINE Alu 149 296 -16 1978 166 0 0 chr12 20538330 20538637 -123743852 - AluJo SINE Alu -5 307 1 366 43 21 0 chr12 20539931 20539978 -123742511 - MER4A LTR ERV1 -489 175 128 2099 123 3 0 chr12 20539978 20540263 -123742226 - AluSc SINE Alu -22 287 2 402 100 0 0 chr12 20540273 20540333 -123742156 - Alu SINE Alu -10 301 242 1720 146 7 22 chr12 20540338 20540613 -123741876 + AluJb SINE Alu 28 298 -14 2501 97 46 0 chr12 20541124 20541474 -123741015 - MER51C LTR ERV1 0 640 275 659 109 11 0 chr12 20541474 20541566 -123740923 + AluSq/x SINE Alu 28 120 -193 857 125 26 33 chr12 20541567 20541719 -123740770 + LTR10E LTR ERV1 481 631 -2 699 205 86 28 chr12 20541723 20541936 -123740553 + HERVI LTR ERV1 5 225 -6424 1077 196 15 0 chr12 20541976 20542175 -123740314 + Harlequin LTR ERV1 2740 2941 -3955 1468 145 114 8 chr12 20542465 20542727 -123739762 - AluJo SINE Alu -13 299 10 185 390 20 0 chr12 20543434 20543534 -123738955 - L2 LINE L2 -33 3280 3179 473 181 71 8 chr12 20543632 20543759 -123738730 - AluSc SINE Alu -15 294 160 44 95 0 0 chr12 20543805 20543921 -123738568 + GC_rich Low_complexity Low_complexity 1 116 0 231 330 0 10 chr12 20547130 20547230 -123735259 + MIR SINE MIR 163 261 -1 377 292 0 0 chr12 20547378 20547474 -123735015 - MIR SINE MIR -70 192 97 1666 184 10 16 chr12 20548276 20548581 -123733908 + AluJo SINE Alu 1 303 -9 24 0 0 0 chr12 20548634 20548658 -123733831 + AT_rich Low_complexity Low_complexity 1 24 0 2310 92 0 0 chr12 20548705 20548999 -123733490 - AluSg SINE Alu -16 294 1 417 266 8 48 chr12 20549343 20549467 -123733022 + MLT-int LTR MaLR 1081 1199 -536 191 264 64 64 chr12 20550025 20550056 -123732433 + L2 LINE L2 3153 3183 -89 1750 148 30 33 chr12 20550056 20550360 -123732129 - AluJo SINE Alu -9 303 1 191 264 64 64 chr12 20550360 20550438 -123732051 + L2 LINE L2 3182 3262 -10 180 152 0 0 chr12 20550942 20550975 -123731514 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 366 179 60 0 chr12 20551028 20551112 -123731377 + L1MC/D LINE L1 5352 5440 -2368 487 71 29 0 chr12 20551114 20551184 -123731305 + Alu SINE Alu 2 73 -236 1605 161 10 33 chr12 20551366 20551726 -123730763 + AluJb SINE Alu 6 358 0 2117 113 0 3 chr12 20551795 20552079 -123730410 + AluSx SINE Alu 1 283 -29 229 180 60 0 chr12 20552106 20552156 -123730333 - LTR37B LTR ERV1 -278 190 138 1152 178 107 28 chr12 20552158 20552462 -123730027 + Charlie1b DNA MER1_type 8 341 -2420 1920 136 10 17 chr12 20552462 20552763 -123729726 + AluSx SINE Alu 1 299 -13 1152 178 107 28 chr12 20552763 20552784 -123729705 + Charlie1b DNA MER1_type 341 359 -164 1089 159 6 6 chr12 20552767 20552937 -123729552 - MER2 DNA MER2_type -173 172 3 * 250 346 47 16 chr12 20552976 20553103 -123729386 - L2 LINE L2 -3 3310 3180 228 35 0 0 chr12 20553271 20553300 -123729189 + (T)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr12 20553386 20553413 -123729076 + GC_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr12 20553448 20553485 -123729004 + GC_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr12 20553491 20553521 -123728968 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr12 20554596 20554632 -123727857 + AT_rich Low_complexity Low_complexity 1 36 0 1674 173 0 42 chr12 20555633 20555939 -123726550 + AluJo SINE Alu 1 293 -19 1080 238 126 80 chr12 20556202 20556764 -123725725 - MLT1G LTR MaLR 0 590 3 663 200 7 35 chr12 20556764 20556909 -123725580 - FAM SINE Alu -4 45 1 1679 176 35 24 chr12 20557033 20557099 -123725390 - L1MB7 LINE L1 -293 5891 5827 2351 78 0 69 chr12 20557099 20557283 -123725206 - AluSp SINE Alu -3 310 115 315 0 0 0 chr12 20557283 20557318 -123725171 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2387 48 0 21 chr12 20557318 20557608 -123724881 - AluY SINE Alu -27 284 1 2351 78 0 69 chr12 20557608 20557755 -123724734 - AluSp SINE Alu -196 117 1 1679 176 35 24 chr12 20557755 20558064 -123724425 - L1MB7 LINE L1 -357 5827 5512 1702 177 35 0 chr12 20558206 20558494 -123723995 - AluJo SINE Alu -13 299 2 638 197 59 0 chr12 20558502 20558654 -123723835 - Charlie1 DNA MER1_type -420 2341 2181 1712 166 7 7 chr12 20559833 20560135 -123722354 + AluJb SINE Alu 11 312 0 773 174 0 0 chr12 20560147 20560279 -123722210 + FLAM_C SINE Alu 2 133 -10 2063 102 7 3 chr12 20560449 20560759 -123721730 - AluSx SINE Alu 0 311 1 264 207 23 23 chr12 20560759 20560846 -123721643 + MER5C DNA MER1_type 170 256 -68 2088 137 0 7 chr12 20560854 20561153 -123721336 - AluSx SINE Alu -15 297 1 877 233 29 0 chr12 20561556 20561766 -123720723 - AluJb SINE Alu -23 289 74 285 128 0 0 chr12 20561923 20561970 -123720519 + (TA)n Simple_repeat Simple_repeat 2 48 0 1805 154 58 0 chr12 20561982 20562274 -123720215 + AluSx SINE Alu 3 311 -1 226 164 36 36 chr12 20562279 20562334 -123720155 - L1MC/D LINE L1 -2048 5760 5706 243 172 17 35 chr12 20562353 20562411 -123720078 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 523 0 30 0 chr12 20562414 20562481 -123720008 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 753 257 69 27 chr12 20562766 20563027 -123719462 + MER20B DNA MER1_type 1 272 -511 2087 123 10 3 chr12 20563027 20563335 -123719154 - AluSx SINE Alu -2 310 1 27 0 0 0 chr12 20563338 20563365 -123719124 + AT_rich Low_complexity Low_complexity 1 27 0 2347 81 27 0 chr12 20566158 20566455 -123716034 + AluSx SINE Alu 8 312 0 2358 104 10 3 chr12 20566614 20566923 -123715566 + AluSq SINE Alu 1 311 -2 327 49 0 0 chr12 20566923 20566964 -123715525 + (TA)n Simple_repeat Simple_repeat 2 42 0 357 281 0 0 chr12 20566967 20567056 -123715433 + L1MC4 LINE L1 6615 6703 -1339 318 322 0 0 chr12 20566976 20567066 -123715423 - L1MC4 LINE L1 -1339 6703 6614 * 1660 158 7 61 chr12 20567308 20567480 -123715009 - AluJb SINE Alu -14 298 118 342 0 0 0 chr12 20567480 20567518 -123714971 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2202 110 0 0 chr12 20567518 20567800 -123714689 - AluSx SINE Alu -30 282 1 1660 158 7 61 chr12 20567800 20567923 -123714566 - AluJb SINE Alu -192 120 18 610 128 32 72 chr12 20568134 20568259 -123714230 + MLT1C LTR MaLR 14 133 -334 643 117 11 0 chr12 20568265 20568359 -123714130 - MSTB1 LTR MaLR -4 428 334 1796 186 48 53 chr12 20568364 20568826 -123713663 + LTR10B LTR ERV1 1 547 0 237 181 128 0 chr12 20568826 20568919 -123713570 - MSTB1 LTR MaLR -100 332 228 234 260 130 0 chr12 20568946 20569046 -123713443 - MSTB1 LTR MaLR -269 163 51 855 230 63 0 chr12 20569170 20569344 -123713145 + AluJb SINE Alu 106 290 -22 911 161 7 0 chr12 20569344 20569499 -123712990 - L1 LINE L1 -3462 2684 2529 * 4370 107 93 11 chr12 20569497 20569982 -123712507 + L1PBa LINE L1 2188 2767 -4095 2123 119 0 7 chr12 20569982 20570285 -123712204 + AluSx SINE Alu 1 301 -11 4370 107 93 11 chr12 20570285 20570612 -123711877 + L1PBa LINE L1 2767 3066 -3796 186 133 0 0 chr12 20571417 20571447 -123711042 + (T)n Simple_repeat Simple_repeat 1 30 0 1153 95 0 6 chr12 20571447 20571605 -123710884 - LTR17 LTR ERV1 -454 326 170 748 103 0 0 chr12 20571654 20571761 -123710728 - AluY SINE Alu -7 304 198 2994 92 19 7 chr12 20572465 20572878 -123709611 - MER4E LTR ERV1 -348 418 1 245 270 16 0 chr12 20572878 20572938 -123709551 + MER20B DNA MER1_type 510 570 -213 565 243 29 21 chr12 20572954 20573094 -123709395 + MER2 DNA MER2_type 1 141 -204 2274 60 40 10 chr12 20573103 20573404 -123709085 + AluY SINE Alu 1 310 -1 1315 101 106 0 chr12 20573417 20573625 -123708864 - MER30 DNA MER1_type 0 230 1 587 62 0 0 chr12 20573625 20573705 -123708784 + MER2 DNA MER2_type 132 211 -134 785 188 30 30 chr12 20573925 20574122 -123708367 + PABL_B LTR ERV1 461 657 -10 180 0 0 0 chr12 20574186 20574206 -123708283 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1773 148 11 14 chr12 20574208 20574357 -123708132 - AluSx SINE Alu -30 282 133 2076 108 7 3 chr12 20574357 20574652 -123707837 - AluSg SINE Alu -14 296 1 1773 148 11 14 chr12 20574652 20574785 -123707704 - AluSx SINE Alu -179 133 1 383 74 19 0 chr12 20574785 20574839 -123707650 + LTR44 LTR ERV1 465 519 0 1639 122 129 0 chr12 20574839 20575110 -123707379 + Tigger3(Golem) DNA MER2_type 2722 3027 -2 294 186 12 58 chr12 20575130 20575216 -123707273 - LTR37B LTR ERV1 -243 225 144 525 301 39 0 chr12 20575235 20575388 -123707101 + MER58A DNA MER1_type 14 172 -52 2972 117 15 0 chr12 20575515 20575926 -123706563 + LTR3 LTR ERVK 1 417 -15 222 255 47 9 chr12 20576047 20576153 -123706336 + G-rich Low_complexity Low_complexity 6 115 0 284 242 32 0 chr12 20576437 20576499 -123705990 - MLT1L LTR MaLR -337 278 215 261 314 14 0 chr12 20576469 20576539 -123705950 - MLT1J LTR MaLR -331 180 110 * 607 200 0 0 chr12 20576571 20576671 -123705818 + AluJ/FLAM SINE Alu 2 101 -211 2156 105 3 25 chr12 20576815 20577156 -123705333 + AluSg SINE Alu 1 310 0 335 104 15 15 chr12 20577158 20577225 -123705264 - MER69 DNA AcHobo -78 2448 2382 313 217 0 0 chr12 20577378 20577438 -123705051 - MER69 DNA AcHobo -2465 61 2 1760 166 10 10 chr12 20577709 20577999 -123704490 + AluSx SINE Alu 1 290 -22 384 247 31 12 chr12 20578204 20578366 -123704123 + (TA)n Simple_repeat Simple_repeat 1 165 0 2173 139 0 0 chr12 20578468 20578778 -123703711 - AluSq SINE Alu -3 310 1 21 0 0 0 chr12 20579061 20579082 -123703407 + AT_rich Low_complexity Low_complexity 1 21 0 2007 156 3 13 chr12 20579087 20579430 -123703059 + AluJb SINE Alu 1 312 0 2215 60 32 3 chr12 20580229 20580513 -123701976 - AluY SINE Alu -19 292 1 463 265 30 8 chr12 20580745 20580877 -123701612 - MIR SINE MIR -18 244 110 2530 76 70 20 chr12 20581346 20581703 -123700786 + THE1C LTR MaLR 1 375 0 1493 176 61 11 chr12 20581951 20582229 -123700260 - AluJb SINE Alu -20 292 1 308 211 120 38 chr12 20582310 20582443 -123700046 + L1ME4a LINE L1 5801 5944 -177 507 42 70 0 chr12 20582444 20582515 -123699974 + AluY SINE Alu 214 289 -22 228 67 0 0 chr12 20583236 20583266 -123699223 + (CA)n Simple_repeat Simple_repeat 1 30 0 379 324 56 17 chr12 20583629 20583808 -123698681 - MIR SINE MIR -40 222 37 206 136 23 0 chr12 20583959 20584003 -123698486 + T-rich Low_complexity Low_complexity 2 46 0 2370 107 0 0 chr12 20584005 20584315 -123698174 - AluSx SINE Alu -2 310 1 2431 93 6 0 chr12 20584325 20584636 -123697853 - AluSq SINE Alu 0 313 1 22 35 0 0 chr12 20584849 20584878 -123697611 + AT_rich Low_complexity Low_complexity 1 29 0 1576 174 10 27 chr12 20585463 20585756 -123696733 + AluJb SINE Alu 1 288 -24 25 19 7 0 chr12 20585879 20585951 -123696538 + AT_rich Low_complexity Low_complexity 1 32 0 1800 169 0 6 chr12 20585974 20586287 -123696202 - AluSx SINE Alu -1 311 1 428 223 134 32 chr12 20587302 20587459 -123695030 - MIR SINE MIR -7 255 83 391 162 0 99 chr12 20587806 20587948 -123694541 + FLAM_C SINE Alu 1 128 -5 1719 143 0 16 chr12 20588622 20588874 -123693615 + AluSx SINE Alu 50 297 -15 1429 210 17 7 chr12 20588952 20589242 -123693247 - AluJb SINE Alu -19 293 1 47 44 0 0 chr12 20590881 20590949 -123691540 + GC_rich Low_complexity Low_complexity 1 68 0 189 0 0 0 chr12 20591178 20591199 -123691290 + (GGA)n Simple_repeat Simple_repeat 1 21 0 291 54 0 0 chr12 20591319 20591356 -123691133 + (GGA)n Simple_repeat Simple_repeat 2 38 0 276 353 22 0 chr12 20591540 20591679 -123690810 + CT-rich Low_complexity Low_complexity 3 144 0 2117 128 3 0 chr12 20592051 20592348 -123690141 - AluSq SINE Alu -15 298 1 239 169 14 99 chr12 20592457 20592528 -123689961 + Tigger5 DNA MER2_type 1446 1510 -813 453 141 0 0 chr12 20592649 20592713 -123689776 + AluS SINE Alu 3 66 -247 1735 161 13 3 chr12 20593290 20593589 -123688900 + AluJo SINE Alu 1 302 -10 304 111 22 0 chr12 20593642 20593687 -123688802 + Alu SINE Alu 1 46 -256 286 154 0 19 chr12 20594928 20594980 -123687509 + Alu SINE Alu 2 52 -250 196 288 17 0 chr12 20595232 20595291 -123687198 - L2 LINE L2 0 3272 3213 436 275 150 14 chr12 20595384 20595591 -123686898 + MIR SINE MIR 20 254 -8 209 33 33 0 chr12 20595604 20595634 -123686855 + (TAA)n Simple_repeat Simple_repeat 2 32 0 349 222 14 0 chr12 20596206 20596278 -123686211 + FLAM SINE Alu 54 126 -7 842 269 173 6 chr12 20596486 20596810 -123685679 + ERVL LTR ERVL 4054 4431 -1333 348 181 121 0 chr12 20597195 20597278 -123685211 - AluJb SINE Alu -9 293 201 4342 60 0 5 chr12 20698865 20699436 -123583053 + L1P3 LINE L1 5254 5821 -351 1437 156 9 130 chr12 20699431 20699855 -123582634 + L1PA12 LINE L1 2699 3064 -4510 * 190 327 106 35 chr12 20701390 20701644 -123580845 - L2 LINE L2 -28 3285 3014 233 291 0 0 chr12 20702072 20702127 -123580362 + (TG)n Simple_repeat Simple_repeat 2 56 0 3243 202 13 5 chr12 20702955 20703574 -123578915 + MER82 DNA MER2_type 1 624 -29 235 234 68 41 chr12 20703620 20703748 -123578741 + MIR SINE MIR 17 152 -68 772 152 0 16 chr12 20704358 20704483 -123578006 - FLAM_A SINE Alu -10 123 1 434 324 242 16 chr12 20706293 20706657 -123575832 + L2 LINE L2 2847 3292 -21 195 42 0 0 chr12 20706665 20706689 -123575800 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 183 80 0 0 chr12 20707270 20707295 -123575194 + (TATG)n Simple_repeat Simple_repeat 4 28 0 22 0 0 0 chr12 20707825 20707847 -123574642 + AT_rich Low_complexity Low_complexity 1 22 0 1582 181 33 26 chr12 20707869 20708172 -123574317 + AluJo SINE Alu 1 305 -7 264 384 15 0 chr12 20708470 20708603 -123573886 + L2 LINE L2 2198 2332 -982 252 130 93 0 chr12 20708603 20708657 -123573832 + L1PB4 LINE L1 6098 6156 0 765 214 9 86 chr12 20708885 20709095 -123573394 + MIR SINE MIR 59 252 -10 2322 92 0 10 chr12 20709097 20709403 -123573086 - AluSg SINE Alu -7 303 1 199 420 35 18 chr12 20709431 20709600 -123572889 + L2 LINE L2 2555 2726 -588 4932 125 59 25 chr12 20710624 20711012 -123571477 - L1MA8 LINE L1 -25 6266 5893 1673 157 88 64 chr12 20711012 20711405 -123571084 + LTR54 LTR ERV1 1 410 -100 2242 87 0 7 chr12 20711405 20711694 -123570795 - AluSc SINE Alu -22 287 1 1673 157 88 64 chr12 20711694 20711798 -123570691 + LTR54 LTR ERV1 410 510 0 4932 125 59 25 chr12 20711798 20712355 -123570134 - L1MA8 LINE L1 -398 5893 5289 29 0 0 0 chr12 20712369 20712398 -123570091 + AT_rich Low_complexity Low_complexity 1 29 0 2040 207 26 42 chr12 20712536 20713038 -123569451 + MER52A LTR ERV1 1262 1755 0 1325 222 19 0 chr12 20713251 20713512 -123568977 - AluJo SINE Alu -46 266 1 602 162 84 7 chr12 20713538 20713680 -123568809 - L1MA9 LINE L1 -1 6311 6159 5592 122 40 21 chr12 20713744 20715191 -123567298 - L1PA14 LINE L1 0 6161 4704 4134 176 33 1 chr12 20715192 20716040 -123566449 + L1P LINE L1 3865 4739 -1407 258 299 124 29 chr12 20716069 20716206 -123566283 + L2 LINE L2 2685 2834 -480 3354 86 286 0 chr12 20716277 20716812 -123565677 - LTR12 LTR ERV1 0 688 1 340 252 28 36 chr12 20717065 20717209 -123565280 + L2 LINE L2 3162 3258 -14 218 316 88 9 chr12 20717481 20717595 -123564894 + L2 LINE L2 3181 3303 -10 442 324 66 23 chr12 20718243 20718502 -123563987 + L1MD2 LINE L1 4981 5250 -896 742 284 88 15 chr12 20718535 20718845 -123563644 + L1MD2 LINE L1 5350 5699 -2109 575 89 0 0 chr12 20718845 20718924 -123563565 + MADE1 DNA Mariner 2 80 0 742 284 88 15 chr12 20718924 20719021 -123563468 + L1MD2 LINE L1 5699 5787 -2021 223 255 39 69 chr12 20720230 20720332 -123562157 - MIR SINE MIR -115 147 49 614 288 132 0 chr12 20720514 20720726 -123561763 - MIR SINE MIR 0 262 23 634 312 32 28 chr12 20720752 20720970 -123561519 + MIR SINE MIR 17 235 -27 26602 44 2 0 chr12 20722270 20725678 -123556811 - L1P LINE L1 -2728 3418 4 422 264 38 44 chr12 20725689 20725848 -123556641 + MIR SINE MIR 103 260 -2 276 215 77 0 chr12 20725941 20726046 -123556443 + L1M1 LINE L1 5374 5491 -677 251 167 130 19 chr12 20726180 20726234 -123556255 + L2 LINE L2 2570 2629 -685 328 222 51 51 chr12 20726234 20726403 -123556086 - MLT1I LTR MaLR -2 565 231 1009 133 0 0 chr12 20726748 20726899 -123555590 - THE1C LTR MaLR -224 151 1 424 194 65 0 chr12 20726899 20727007 -123555482 + L1MD2 LINE L1 6223 6337 -22 537 295 0 7 chr12 20727153 20727292 -123555197 + L2 LINE L2 3176 3313 0 357 265 94 12 chr12 20727308 20727478 -123555011 + L1MC4a LINE L1 5727 5910 -1898 367 293 207 0 chr12 20727506 20727680 -123554809 + MIR SINE MIR 10 219 -43 24 0 0 0 chr12 20727871 20727895 -123554594 + AT_rich Low_complexity Low_complexity 1 24 0 253 231 0 51 chr12 20729850 20729928 -123552561 - MER93b LTR ERV1 -30 343 270 23 0 0 0 chr12 20729951 20729974 -123552515 + AT_rich Low_complexity Low_complexity 1 23 0 302 207 0 0 chr12 20730059 20730117 -123552372 - MSTA LTR MaLR -2 426 369 272 175 0 0 chr12 20730217 20730274 -123552215 - L1 LINE L1 -889 5257 5201 22 35 0 0 chr12 20731186 20731215 -123551274 + AT_rich Low_complexity Low_complexity 1 29 0 310 120 93 27 chr12 20732119 20732194 -123550295 + L1PA8 LINE L1 6093 6172 0 263 375 81 22 chr12 20733431 20733567 -123548922 + L2 LINE L2 3125 3268 -4 2516 177 18 81 chr12 20734056 20734611 -123547878 - MLT2B1 LTR ERVL 0 520 1 210 290 0 58 chr12 20734998 20735067 -123547422 + MIR SINE MIR 49 113 -149 2293 98 14 0 chr12 20735170 20735466 -123547023 - AluSp SINE Alu -13 300 1 202 283 104 38 chr12 20735507 20735613 -123546876 - MIR3 SINE MIR -54 154 42 180 336 55 82 chr12 20735664 20735774 -123546715 - L2 LINE L2 -37 3235 3129 405 315 93 6 chr12 20735907 20736069 -123546420 + MIR SINE MIR 22 197 -65 414 216 0 0 chr12 20736088 20736176 -123546313 + MER94 DNA DNA 8 95 -39 333 344 104 0 chr12 20736383 20736537 -123545952 - MIR3 SINE MIR -1 207 38 198 300 150 17 chr12 20737405 20737525 -123544964 + L2 LINE L2 3133 3268 -4 260 118 0 20 chr12 20737900 20737951 -123544538 + (GA)n Simple_repeat Simple_repeat 2 51 0 2168 107 19 23 chr12 20738712 20739022 -123543467 - AluSx SINE Alu -3 309 1 2300 108 13 0 chr12 20739587 20739894 -123542595 - AluSp SINE Alu -2 311 1 247 230 0 27 chr12 20740231 20740305 -123542184 - MLT1K LTR MaLR 0 588 517 1569 213 32 15 chr12 20740548 20740956 -123541533 + MLT1C LTR MaLR 53 467 0 1384 55 6 6 chr12 20741655 20741836 -123540653 - L1PA6 LINE L1 -11 6143 5963 2618 52 23 0 chr12 20741836 20742181 -123540308 + L1PA6 LINE L1 5601 5953 -201 2985 126 133 61 chr12 20742240 20742962 -123539527 - LTR1 LTR ERV1 0 785 12 409 318 194 5 chr12 20743575 20743786 -123538703 + MIR SINE MIR 2 252 -10 2142 186 38 2 chr12 20744910 20744944 -123537545 - MLT2D LTR ERVL 0 414 383 318 67 0 0 chr12 20744944 20744989 -123537500 + (TG)n Simple_repeat Simple_repeat 1 45 0 2142 186 38 2 chr12 20744989 20745352 -123537137 - MLT2D LTR ERVL -31 383 3 23 0 0 0 chr12 20745454 20745477 -123537012 + AT_rich Low_complexity Low_complexity 1 23 0 5331 57 0 3 chr12 20746180 20746848 -123535641 + L1PA8 LINE L1 5505 6170 -2 505 197 45 15 chr12 20749073 20749205 -123533284 + L1 LINE L1 4255 4390 -1756 817 287 38 4 chr12 20749205 20749442 -123533047 + MIR SINE MIR 8 252 -10 260 328 30 30 chr12 20749678 20749876 -123532613 + L2 LINE L2 2456 2653 -661 268 83 42 0 chr12 20750118 20750166 -123532323 + L1MB3 LINE L1 6132 6181 -2 1703 212 162 24 chr12 20750361 20750988 -123531501 + MER52A LTR ERV1 1 800 -955 1780 188 27 0 chr12 20751798 20752091 -123530398 + AluJo SINE Alu 1 301 -11 271 378 8 0 chr12 20752697 20752816 -123529673 + MIR SINE MIR 143 262 0 454 347 62 32 chr12 20753430 20753799 -123528690 + L2 LINE L2 1814 2193 -1121 685 250 27 58 chr12 20754401 20754661 -123527828 + MLT1J LTR MaLR 19 270 -241 234 91 0 0 chr12 20754685 20754718 -123527771 + (TA)n Simple_repeat Simple_repeat 1 33 0 476 288 84 77 chr12 20754862 20755147 -123527342 - L2 LINE L2 -853 2461 2175 22 0 0 0 chr12 20755569 20755591 -123526898 + AT_rich Low_complexity Low_complexity 1 22 0 304 340 59 13 chr12 20755779 20755932 -123526557 + L3b LINE CR1 1344 1503 -80 2344 59 29 10 chr12 20757140 20757446 -123525043 - AluSq SINE Alu -1 312 1 294 271 49 57 chr12 20757534 20757657 -123524832 + MIR SINE MIR 28 148 -60 2555 43 3 3 chr12 20757850 20758155 -123524334 - AluY SINE Alu -6 305 1 2382 32 4 4 chr12 20758405 20758720 -123523769 + AluY SINE Alu 1 315 0 282 136 23 0 chr12 20758772 20758816 -123523673 + Tigger5 DNA MER2_type 2279 2323 0 2420 54 10 3 chr12 20759015 20759313 -123523176 - AluY SINE Alu -11 300 1 21 36 0 0 chr12 20759416 20759444 -123523045 + AT_rich Low_complexity Low_complexity 1 28 0 406 324 125 0 chr12 20759514 20759690 -123522799 - MIR SINE MIR -8 254 57 2154 108 3 23 chr12 20759991 20760296 -123522193 + AluSx SINE Alu 1 299 -13 279 54 0 0 chr12 20760648 20760685 -123521804 + (CA)n Simple_repeat Simple_repeat 2 38 0 2284 158 59 2 chr12 20760891 20761297 -123521192 + MSTB1 LTR MaLR 4 432 0 22 0 0 0 chr12 20761813 20761835 -123520654 + AT_rich Low_complexity Low_complexity 1 22 0 413 294 53 0 chr12 20762860 20763030 -123519459 - L1ME3A LINE L1 -221 5949 5771 262 268 26 8 chr12 20763066 20763194 -123519295 - L1ME3A LINE L1 -740 5422 5293 666 268 86 71 chr12 20763316 20764048 -123518441 - L1ME3A LINE L1 -1023 5123 4381 1478 238 38 38 chr12 20764099 20764574 -123517915 - L1ME3A LINE L1 -5 6165 5691 222 37 0 0 chr12 20764575 20764602 -123517887 + (TG)n Simple_repeat Simple_repeat 2 28 0 359 162 27 0 chr12 20764602 20764676 -123517813 + (CATA)n Simple_repeat Simple_repeat 2 77 0 238 286 0 0 chr12 20764676 20764767 -123517722 - L1MC4 LINE L1 -1339 6703 6613 1247 296 104 7 chr12 20764773 20765774 -123516715 - L1ME3A LINE L1 -446 5724 4620 302 281 89 0 chr12 20765794 20765929 -123516560 - L1ME3A LINE L1 -1857 4289 4143 238 310 120 0 chr12 20766236 20766336 -123516153 - MIR SINE MIR -3 259 148 1723 175 7 26 chr12 20766405 20766713 -123515776 + AluJo SINE Alu 3 304 -8 29 0 0 0 chr12 20767362 20767391 -123515098 + AT_rich Low_complexity Low_complexity 1 29 0 301 266 149 27 chr12 20767491 20767679 -123514810 + L1ME LINE L1 5591 5801 -363 84 92 0 6 chr12 20767681 20767992 -123514497 + AT_rich Low_complexity Low_complexity 1 300 0 288 239 45 0 chr12 20768021 20768176 -123514313 + (TATAA)n Simple_repeat Simple_repeat 2 163 0 3711 118 0 27 chr12 20768199 20768799 -123513690 + L1PA16 LINE L1 2282 2865 -3984 2558 50 0 0 chr12 20768799 20769098 -123513391 + AluY SINE Alu 1 299 -12 7492 195 33 21 chr12 20769104 20771896 -123510593 + L1PA16 LINE L1 4044 6858 -11 * 8492 250 37 53 chr12 20771891 20772964 -123509525 + L1PA12 LINE L1 17 1105 -6479 7332 199 18 22 chr12 20772964 20773603 -123508886 - L1PA14 LINE L1 -8 6153 5513 1963 155 3 0 chr12 20773603 20773900 -123508589 - AluSx SINE Alu -14 298 1 7332 199 18 22 chr12 20773900 20775730 -123506759 - L1PA14 LINE L1 -648 5513 3671 8492 250 37 53 chr12 20775730 20780244 -123502245 + L1PA12 LINE L1 1105 5009 -2575 2134 75 14 0 chr12 20780246 20780538 -123501951 + AluY SINE Alu 1 296 -15 1225 271 57 17 chr12 20780555 20781078 -123501411 + L1PB1 LINE L1 6 549 -6314 429 222 8 8 chr12 20781103 20781220 -123501269 + L1PB1 LINE L1 5717 5833 -1029 * 5586 106 10 0 chr12 20781216 20782028 -123500461 + L1PB1 LINE L1 6040 6859 -8 2524 126 10 3 chr12 20782043 20782432 -123500057 + L1PA15 LINE L1 5771 6162 -3 301 208 13 26 chr12 20782434 20782511 -123499978 + L1MC5 LINE L1 7580 7655 -306 498 342 39 9 chr12 20783571 20783802 -123498687 + MIR SINE MIR 20 257 -5 390 269 62 8 chr12 20784030 20784160 -123498329 - L1ME3A LINE L1 -11 6159 6023 2064 114 37 0 chr12 20786115 20786414 -123496075 - AluSg SINE Alu 0 310 1 6208 82 1 2 chr12 20787229 20788063 -123494426 - L1PA8A LINE L1 -27 6104 5272 1287 33 0 0 chr12 20789706 20789901 -123492588 + L1PA3 LINE L1 5998 6192 0 223 329 20 9 chr12 20790052 20790167 -123492322 - MER5A DNA MER1_type -59 119 14 1497 254 83 23 chr12 20791351 20791823 -123490666 + MLT1D LTR MaLR 6 505 0 454 279 16 66 chr12 20791854 20792037 -123490452 + MER5B DNA MER1_type 4 177 -1 2229 199 39 18 chr12 20792051 20792544 -123489945 - MLT1D LTR MaLR -2 503 1 415 184 97 0 chr12 20793280 20793394 -123489095 - L1MEc LINE L1 -3163 3052 2928 292 353 77 21 chr12 20793553 20794071 -123488418 - L1MEc LINE L1 -4778 1618 1072 21 36 0 0 chr12 20794100 20794128 -123488361 + AT_rich Low_complexity Low_complexity 1 28 0 721 172 8 0 chr12 20794651 20794773 -123487716 + FLAM_A SINE Alu 1 123 -10 251 293 29 64 chr12 20794786 20794926 -123487563 - L1MEc LINE L1 -5655 550 416 2526 53 0 3 chr12 20795078 20795382 -123487107 + AluY SINE Alu 1 303 -8 303 93 0 0 chr12 20795517 20795560 -123486929 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 615 238 130 27 chr12 20796378 20796601 -123485888 + MIR SINE MIR 7 252 -10 2305 93 13 0 chr12 20797095 20797395 -123485094 - AluSp SINE Alu -9 304 1 2090 137 0 0 chr12 20797633 20797926 -123484563 + AluSx SINE Alu 1 293 -19 210 333 0 0 chr12 20802747 20802816 -123479673 - MIR SINE MIR -48 214 146 760 289 108 44 chr12 20803027 20803481 -123479008 - LTR33 LTR ERVL -4 517 35 317 296 63 13 chr12 20803591 20803750 -123478739 - L1ME LINE L1 -357 5764 5598 703 289 76 24 chr12 20803757 20804006 -123478483 + MIR SINE MIR 1 262 0 2252 91 7 3 chr12 20804021 20804318 -123478171 - AluSx SINE Alu -14 298 1 4429 82 21 6 chr12 20804334 20804957 -123477532 + L1PB1 LINE L1 5520 6151 0 285 331 120 0 chr12 20804986 20805128 -123477361 - L1ME LINE L1 -2230 5578 5420 4484 185 84 27 chr12 20806069 20806254 -123476235 - L1MA8 LINE L1 -1 6290 6117 2220 105 6 25 chr12 20806254 20806569 -123475920 + AluSx SINE Alu 2 310 -2 4484 185 84 27 chr12 20806569 20807560 -123474929 - L1MA8 LINE L1 -174 6117 5024 1693 141 36 7 chr12 20807560 20807836 -123474653 - AluSq SINE Alu -9 304 21 4484 185 84 27 chr12 20807836 20808086 -123474403 - L1MA8 LINE L1 -1267 5024 4790 1134 242 9 0 chr12 20808093 20808320 -123474169 + Charlie1a DNA MER1_type 3 231 -1224 4416 225 12 28 chr12 20808320 20809559 -123472930 - L1M4 LINE L1 -2012 4134 2916 494 265 26 8 chr12 20809541 20809775 -123472714 - L1ME LINE L1 -1763 4383 4146 * 379 352 80 56 chr12 20811297 20811584 -123470905 - L2 LINE L2 0 3272 2979 32 81 0 0 chr12 20811932 20812006 -123470483 + AT_rich Low_complexity Low_complexity 1 74 0 1559 175 0 15 chr12 20812013 20812281 -123470208 + AluJo SINE Alu 38 301 -11 2062 106 26 7 chr12 20813954 20814256 -123468233 + AluY SINE Alu 1 308 -3 190 322 52 61 chr12 20814558 20814673 -123467816 + MER5A DNA MER1_type 47 160 -29 432 257 79 40 chr12 20818321 20818473 -123464016 - MIR3 SINE MIR -38 170 13 528 233 68 0 chr12 20819222 20819355 -123463134 - L1ME3 LINE L1 -7 6155 6014 2546 40 30 0 chr12 20820533 20820833 -123461656 + AluY SINE Alu 1 309 -2 660 295 106 34 chr12 20821060 20821382 -123461107 + L3 LINE CR1 989 1333 -244 301 353 20 20 chr12 20821479 20821632 -123460857 + L2 LINE L2 2606 2758 -556 563 286 103 42 chr12 20821634 20821896 -123460593 + Charlie2 DNA MER1_type 1 278 -2504 1695 170 123 157 chr12 20821924 20822948 -123459541 + Charlie2 DNA MER1_type 1870 2858 -4 21 0 0 0 chr12 20823006 20823027 -123459462 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr12 20823692 20823731 -123458758 + AT_rich Low_complexity Low_complexity 1 39 0 211 214 107 0 chr12 20824004 20824060 -123458429 + L2 LINE L2 3149 3210 -62 25 51 0 0 chr12 20824144 20824183 -123458306 + AT_rich Low_complexity Low_complexity 1 39 0 376 258 21 0 chr12 20824186 20824283 -123458206 - MIR SINE MIR -112 150 52 734 63 0 0 chr12 20824392 20824487 -123458002 + AluS SINE Alu 1 95 -217 804 270 189 27 chr12 20825124 20825642 -123456847 - L1MC4 LINE L1 0 8042 7441 228 353 24 0 chr12 20825721 20825806 -123456683 + MLT1K LTR MaLR 162 248 -340 24 0 0 0 chr12 20825808 20825832 -123456657 + AT_rich Low_complexity Low_complexity 1 24 0 632 290 94 9 chr12 20825997 20826221 -123456268 - MIR SINE MIR -13 249 7 306 0 0 0 chr12 20826992 20827026 -123455463 + (TG)n Simple_repeat Simple_repeat 1 34 0 294 171 0 0 chr12 20827044 20827085 -123455404 - AluJo SINE Alu -45 257 217 825 199 26 0 chr12 20827085 20827241 -123455248 - AluJo SINE Alu -152 160 1 216 320 144 21 chr12 20827450 20827547 -123454942 - MIR SINE MIR -107 155 47 240 143 16 32 chr12 20829142 20829205 -123453284 + CT-rich Low_complexity Low_complexity 2 63 0 567 162 11 39 chr12 20829222 20829401 -123453088 + CT-rich Low_complexity Low_complexity 1 174 0 1268 188 106 0 chr12 20829404 20829659 -123452830 - AluJo SINE Alu -30 282 1 293 322 28 51 chr12 20831538 20831715 -123450774 - L1ME3A LINE L1 -10 6160 5988 2297 282 125 22 chr12 20831860 20832575 -123449914 - L1ME3A LINE L1 -265 5905 5265 2192 109 0 3 chr12 20832575 20832907 -123449582 + AluSq SINE Alu 1 331 0 2297 282 125 22 chr12 20832907 20833917 -123448572 - L1ME3A LINE L1 -905 5265 3933 1028 224 9 26 chr12 20833917 20834145 -123448344 + MER58A DNA MER1_type 1 224 0 2297 282 125 22 chr12 20834145 20834484 -123448005 - L1ME3A LINE L1 -2237 3933 3630 622 268 175 25 chr12 20834492 20834882 -123447607 - L1ME3A LINE L1 -2587 3559 3229 2162 112 0 7 chr12 20834882 20835178 -123447311 - AluSg SINE Alu -16 294 1 622 268 175 25 chr12 20835178 20835242 -123447247 - L1ME3A LINE L1 -2917 3229 3176 2361 78 3 0 chr12 20835242 20835537 -123446952 - AluY SINE Alu -15 296 1 622 268 175 25 chr12 20835537 20835922 -123446567 - L1ME3A LINE L1 -2970 3176 2593 2142 99 3 3 chr12 20835926 20836220 -123446269 - AluY SINE Alu -17 294 1 3479 125 45 96 chr12 20836310 20837062 -123445427 + LTR1 LTR ERV1 16 729 -56 1611 142 8 0 chr12 20837162 20837430 -123445059 - L1 LINE L1 -907 5239 4970 780 106 28 14 chr12 20837445 20837587 -123444902 + CT-rich Low_complexity Low_complexity 2 145 0 969 165 11 27 chr12 20837594 20837782 -123444707 - L1 LINE L1 -1193 4953 4769 540 349 66 37 chr12 20837908 20837941 -123444548 + L2 LINE L2 2437 2468 -846 3457 137 27 0 chr12 20837941 20838454 -123444035 + MER1A DNA MER1_type 1 527 0 540 349 66 37 chr12 20838454 20838827 -123443662 + L2 LINE L2 2468 2855 -459 1422 165 32 19 chr12 20838844 20839159 -123443330 - L1MA9 LINE L1 -10 6302 5984 387 291 137 38 chr12 20839193 20839536 -123442953 + L2 LINE L2 2830 3206 -107 312 208 150 17 chr12 20839629 20839749 -123442740 + L2 LINE L2 3159 3294 -19 642 231 173 91 chr12 20839912 20840450 -123442039 + MER34C LTR ERV1 4 585 0 243 367 47 16 chr12 20840869 20840997 -123441492 + MIR3 SINE MIR 70 201 -7 971 209 107 0 chr12 20841199 20841414 -123441075 - MIR SINE MIR -5 257 20 443 231 154 13 chr12 20842224 20842387 -123440102 - MIR3 SINE MIR -14 194 15 22 0 0 0 chr12 20842775 20842797 -123439692 + AT_rich Low_complexity Low_complexity 1 22 0 1006 238 105 13 chr12 20843044 20843402 -123439087 - MER57A LTR ERV1 0 403 48 371 172 83 41 chr12 20844053 20844198 -123438291 - LTR37B LTR ERV1 -107 361 211 716 129 0 0 chr12 20844327 20844428 -123438061 - L1PA10 LINE L1 -13 6155 6055 5008 103 8 1 chr12 20844428 20845146 -123437343 + L1P LINE L1 3614 4339 -1807 563 222 45 45 chr12 20845163 20845361 -123437128 - LTR37B LTR ERV1 -270 198 1 339 297 0 17 chr12 20845631 20845749 -123436740 - L1MC5 LINE L1 -44 7917 7802 2775 221 67 41 chr12 20845779 20845817 -123436672 - L1ME1 LINE L1 0 6239 6203 856 124 0 0 chr12 20845817 20845938 -123436551 - L1PA10 LINE L1 -12 6156 6036 2775 221 67 41 chr12 20845938 20846513 -123435976 - L1ME1 LINE L1 -36 6203 5644 1974 136 144 24 chr12 20846513 20846895 -123435594 + MSTA LTR MaLR 1 428 0 2775 221 67 41 chr12 20846895 20846988 -123435501 - L1ME1 LINE L1 -595 5644 5555 2195 110 3 0 chr12 20846988 20847287 -123435202 + AluSg SINE Alu 4 303 -7 2775 221 67 41 chr12 20847287 20847681 -123434808 - L1ME1 LINE L1 -684 5555 5129 1674 252 73 42 chr12 20847705 20847817 -123434672 - L1ME1 LINE L1 -3321 2894 2787 2184 113 139 16 chr12 20847817 20848198 -123434291 + MSTA LTR MaLR 1 428 0 1674 252 73 42 chr12 20848198 20848863 -123433626 - L1ME1 LINE L1 -3428 2787 2116 2028 151 26 83 chr12 20848863 20849321 -123433168 + MSTB1 LTR MaLR 1 432 0 1674 252 73 42 chr12 20849321 20849689 -123432800 - L1ME1 LINE L1 -4099 2116 1761 272 184 0 0 chr12 20849748 20849797 -123432692 - U7 snRNA snRNA -14 49 1 376 162 108 18 chr12 20850965 20851076 -123431413 - LTR37B LTR ERV1 0 468 348 28 0 0 0 chr12 20853045 20853073 -123429416 + AT_rich Low_complexity Low_complexity 1 28 0 3597 139 18 21 chr12 20853084 20853701 -123428788 - L1MB1 LINE L1 -1 6167 5553 366 279 106 0 chr12 20854131 20854235 -123428254 + MIR3 SINE MIR 45 159 -49 189 0 0 0 chr12 20854359 20854380 -123428109 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 2091 101 7 0 chr12 20854380 20854657 -123427832 - AluY SINE Alu -29 282 4 867 219 6 6 chr12 20855611 20855794 -123426695 + LTR41 LTR ERVL 1 183 -590 674 248 26 88 chr12 20855966 20856272 -123426217 + LTR41 LTR ERVL 486 772 -1 781 254 147 0 chr12 20856744 20856968 -123425521 + MIR SINE MIR 6 262 0 345 125 0 0 chr12 20857051 20857107 -123425382 + (ATG)n Simple_repeat Simple_repeat 2 57 0 193 309 275 20 chr12 20858341 20858490 -123423999 - MER5A DNA MER1_type -1 188 2 746 310 48 37 chr12 20860293 20860645 -123421844 - L2 LINE L2 -1 3312 2957 203 61 30 0 chr12 20860827 20860860 -123421629 + (GA)n Simple_repeat Simple_repeat 1 34 0 521 210 12 80 chr12 20860904 20860991 -123421498 - MLT1A2 LTR MaLR -223 151 78 2696 94 6 3 chr12 20860991 20861354 -123421135 + THE1B LTR MaLR 1 364 0 521 210 12 80 chr12 20861354 20861428 -123421061 - MLT1A2 LTR MaLR -296 78 1 767 258 0 6 chr12 20862328 20862491 -123419998 + MLT1F1 LTR MaLR 1 162 -431 21 57 0 0 chr12 20862606 20862641 -123419848 + AT_rich Low_complexity Low_complexity 1 35 0 3200 49 5 2 chr12 20862679 20863086 -123419403 - L1PA6 LINE L1 -3 6151 5744 205 330 35 43 chr12 20863306 20863421 -123419068 - MIR3 SINE MIR -23 185 72 271 202 10 96 chr12 20863706 20863810 -123418679 - MIR SINE MIR -57 205 111 26 0 0 0 chr12 20864082 20864108 -123418381 + AT_rich Low_complexity Low_complexity 1 26 0 206 304 0 18 chr12 20864875 20864931 -123417558 - L2 LINE L2 -2 3311 3257 208 330 60 10 chr12 20865466 20865566 -123416923 - L2 LINE L2 0 3272 3168 366 268 116 7 chr12 20866136 20866274 -123416215 - MIR SINE MIR 0 262 110 207 69 0 0 chr12 20866458 20866487 -123416002 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4155 72 24 35 chr12 20866487 20867080 -123415409 - L1PA8 LINE L1 -22 6150 5565 3219 235 51 10 chr12 20868219 20869044 -123413445 + Charlie1a DNA MER1_type 1 859 -596 900 218 279 4 chr12 20869163 20869443 -123413046 + MLT1F1 LTR MaLR 211 567 0 1777 321 88 86 chr12 20869457 20870423 -123412066 - L2 LINE L2 -1087 2227 1264 1956 107 36 7 chr12 20870423 20870704 -123411785 + AluSc SINE Alu 1 289 -20 1777 321 88 86 chr12 20870704 20870806 -123411683 - L2 LINE L2 -2050 1264 1164 475 219 0 9 chr12 20870806 20870920 -123411569 + L1PB4 LINE L1 6043 6155 -1 1777 321 88 86 chr12 20870920 20871718 -123410771 - L2 LINE L2 -2150 1164 357 360 319 13 25 chr12 20871827 20871984 -123410505 - L2 LINE L2 -2228 1086 932 209 336 148 16 chr12 20872224 20872352 -123410137 + L2 LINE L2 3127 3271 -42 2149 68 6 95 chr12 20874377 20874715 -123407774 + AluSg SINE Alu 1 308 -2 670 192 105 83 chr12 20874719 20875032 -123407457 - LTR56 LTR ERV1 -125 320 1 396 240 70 105 chr12 20875136 20875336 -123407153 + MIR SINE MIR 6 198 -64 297 119 0 174 chr12 20875987 20876096 -123406393 - L1MB3 LINE L1 0 6183 6094 188 260 207 33 chr12 20876390 20876540 -123405949 - MIR SINE MIR -10 252 77 22 0 0 0 chr12 20877898 20877920 -123404569 + AT_rich Low_complexity Low_complexity 1 22 0 421 306 155 10 chr12 20880992 20881185 -123401304 - MIR SINE MIR -7 255 35 643 282 98 31 chr12 20883479 20883866 -123398623 - L1MC5 LINE L1 -48 7913 7501 1023 224 30 25 chr12 20885135 20885372 -123397117 - MIR SINE MIR -23 239 2 651 198 0 3 chr12 20885428 20885570 -123396919 + L1ME1 LINE L1 6037 6334 0 316 222 50 86 chr12 20885960 20886181 -123396308 - L1MEc LINE L1 -3682 2533 2321 576 246 91 64 chr12 20886370 20886699 -123395790 - L1MEc LINE L1 -4822 1574 1237 2116 115 7 3 chr12 20887475 20887771 -123394718 - AluSq SINE Alu -16 297 1 272 87 58 101 chr12 20889231 20889300 -123393189 + FLAM SINE Alu 69 133 0 247 303 67 73 chr12 20889434 20889599 -123392890 - L2 LINE L2 0 3313 3150 1030 284 134 30 chr12 20889857 20890319 -123392170 + LTR33 LTR ERVL 2 511 -10 23 33 0 0 chr12 20890417 20890447 -123392042 + AT_rich Low_complexity Low_complexity 1 30 0 643 77 0 0 chr12 20890448 20890539 -123391950 + L1PA3 LINE L1 6065 6155 0 469 0 16 16 chr12 20890586 20890648 -123391841 + (CA)n Simple_repeat Simple_repeat 1 62 0 967 119 16 52 chr12 20890648 20890842 -123391647 - L1MA8 LINE L1 -22 6269 6083 219 363 78 0 chr12 20891324 20891426 -123391063 - L2 LINE L2 -610 2704 2595 276 228 13 63 chr12 20891620 20891699 -123390790 - LTR19C LTR ERV1 -89 690 616 807 233 38 0 chr12 20891700 20891910 -123390579 + AluSx SINE Alu 1 218 -94 29 28 0 0 chr12 20892254 20892290 -123390199 + AT_rich Low_complexity Low_complexity 1 36 0 195 291 36 0 chr12 20892360 20892415 -123390074 + L3 LINE CR1 707 763 -814 300 115 0 0 chr12 20894350 20894402 -123388087 + L1PA15 LINE L1 6111 6162 -3 530 319 94 60 chr12 20894416 20895161 -123387328 + L3 LINE CR1 780 1549 -28 213 39 0 0 chr12 20896183 20896209 -123386280 + (TG)n Simple_repeat Simple_repeat 2 27 0 775 235 0 0 chr12 20896584 20896737 -123385752 + AluJb SINE Alu 144 296 -16 626 296 129 18 chr12 20896902 20897182 -123385307 + L2 LINE L2 2560 2870 -444 29 0 0 0 chr12 20897741 20897770 -123384719 + AT_rich Low_complexity Low_complexity 1 29 0 266 263 88 36 chr12 20897960 20898097 -123384392 - MLT1J2 LTR MaLR -230 220 77 213 39 0 0 chr12 20898204 20898230 -123384259 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2252 89 31 6 chr12 20898233 20898557 -123383932 - L1PA13 LINE L1 -18 6145 5814 2094 111 3 38 chr12 20899429 20899745 -123382744 + AluSx SINE Alu 3 307 -5 244 349 7 34 chr12 20900199 20900345 -123382144 + L3 LINE CR1 1309 1450 -127 2880 174 20 14 chr12 20900394 20900950 -123381539 + MER89 LTR ERV1 1 559 0 2492 78 0 0 chr12 20901236 20901543 -123380946 - AluSq SINE Alu -4 309 3 1890 110 31 41 chr12 20901556 20901847 -123380642 - AluSx SINE Alu -24 288 1 572 270 28 39 chr12 20901954 20902159 -123380330 - MIR SINE MIR -21 241 37 25 75 0 0 chr12 20902511 20902564 -123379925 + AT_rich Low_complexity Low_complexity 1 53 0 205 175 48 32 chr12 20902566 20902629 -123379860 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 21 0 0 0 chr12 20902693 20902714 -123379775 + AT_rich Low_complexity Low_complexity 1 21 0 229 240 177 31 chr12 20902714 20902810 -123379679 - MIR SINE MIR -58 204 95 285 313 76 21 chr12 20904187 20904331 -123378158 - MIR SINE MIR -64 198 47 428 302 75 6 chr12 20905536 20905695 -123376794 + MIR SINE MIR 63 232 -30 620 209 150 7 chr12 20906128 20906281 -123376208 + MER8 DNA MER2_type 65 239 0 872 178 89 0 chr12 20906329 20906498 -123375991 - MER5A DNA MER1_type 0 189 6 286 228 196 43 chr12 20906512 20906604 -123375885 + MER5B DNA MER1_type 21 126 -52 207 0 0 0 chr12 20907700 20907723 -123374766 + (T)n Simple_repeat Simple_repeat 1 23 0 643 199 37 12 chr12 20908330 20908491 -123373998 + Charlie1a DNA MER1_type 1291 1455 0 883 259 64 12 chr12 20909232 20909483 -123373006 - LTR50 LTR ERVL -144 651 388 1789 146 0 52 chr12 20910075 20910383 -123372106 + AluJo SINE Alu 4 295 -17 646 344 208 25 chr12 20910523 20911805 -123370684 + L3 LINE CR1 60 1576 -1 2434 68 3 10 chr12 20912704 20913012 -123369477 - AluY SINE Alu -5 306 1 1441 207 66 9 chr12 20915232 20915427 -123367062 + MLT1A1 LTR MaLR 14 237 -128 501 125 0 0 chr12 20915427 20915507 -123366982 + MADE1 DNA Mariner 1 80 0 1441 207 66 9 chr12 20915507 20915644 -123366845 + MLT1A1 LTR MaLR 237 365 0 307 314 29 20 chr12 20916090 20916192 -123366297 + MIR SINE MIR 109 211 -51 744 197 66 33 chr12 20916379 20916623 -123365866 - Charlie1 DNA MER1_type 0 2761 2510 2301 82 0 22 chr12 20916913 20917229 -123365260 + AluY SINE Alu 1 309 -2 1965 143 0 22 chr12 20917233 20917548 -123364941 + AluJb SINE Alu 3 310 -2 449 211 73 9 chr12 20917671 20917780 -123364709 - MIR SINE MIR 0 262 147 2418 97 0 0 chr12 20918086 20918386 -123364103 - AluSg SINE Alu -7 303 4 252 178 0 0 chr12 20919168 20919213 -123363276 - MER96B DNA MER1_type? -181 236 192 1727 131 12 0 chr12 20919366 20919618 -123362871 - AluJb SINE Alu -12 300 46 1906 132 4 4 chr12 20920283 20920564 -123361925 - AluSx SINE Alu -12 300 20 23 0 0 0 chr12 20920590 20920613 -123361876 + AT_rich Low_complexity Low_complexity 1 23 0 232 298 99 33 chr12 20920896 20921017 -123361472 + MER5A DNA MER1_type 37 165 -24 * 236 341 9 28 chr12 20920933 20921041 -123361448 - MER5A DNA MER1_type -72 117 1 186 156 0 0 chr12 20922317 20922349 -123360140 + MIR SINE MIR 86 117 -91 1981 132 3 14 chr12 20922467 20922763 -123359726 + AluSx SINE Alu 1 293 -19 1944 223 43 10 chr12 20923395 20923884 -123358605 + MLT1D LTR MaLR 1 505 0 478 167 0 44 chr12 20923893 20924007 -123358482 + MER96B DNA MER1_type? 250 358 -59 202 209 0 0 chr12 20924608 20924651 -123357838 + (CAA)n Simple_repeat Simple_repeat 2 44 0 251 284 37 12 chr12 20924677 20924758 -123357731 - MIR SINE MIR -71 191 109 552 188 145 7 chr12 20924770 20924908 -123357581 - MIR SINE MIR 0 262 106 1236 123 23 32 chr12 20925120 20925339 -123357150 + THE1C LTR MaLR 159 375 0 1409 273 80 66 chr12 20925384 20926334 -123356155 + HAL1 LINE L1 433 1395 -1112 2500 233 111 14 chr12 20926678 20927757 -123354732 + L1ME3 LINE L1 4972 6155 -7 647 200 97 24 chr12 20928536 20928701 -123353788 + MER5B DNA MER1_type 1 177 -1 1051 148 6 6 chr12 20929133 20929315 -123353174 + L1PB1 LINE L1 5957 6138 -13 610 242 70 23 chr12 20929580 20929795 -123352694 + MER110 LTR ERV1 246 470 -21 186 43 0 0 chr12 20930809 20930832 -123351657 + (TG)n Simple_repeat Simple_repeat 1 23 0 314 280 40 0 chr12 20931194 20931294 -123351195 + MIR SINE MIR 78 181 -81 257 425 12 12 chr12 20932355 20932515 -123349974 + L2 LINE L2 3103 3262 -10 692 210 35 142 chr12 20932830 20933204 -123349285 - MER33 DNA MER1_type -1 323 1 678 222 19 12 chr12 20934118 20934280 -123348209 + MER45A DNA AcHobo 16 178 0 878 157 39 0 chr12 20934438 20934591 -123347898 - L1PB1 LINE L1 -21 6130 5972 * 1517 226 11 11 chr12 20934570 20934942 -123347547 - L1 LINE L1 -1059 5087 4716 7625 91 57 32 chr12 20934942 20936171 -123346318 + pTR5 LTR ERV1 763 2021 -417 290 248 30 20 chr12 20936172 20936273 -123346216 + LTR30 LTR ERV1 541 642 -80 885 61 35 0 chr12 20936273 20936388 -123346101 + pTR5 LTR ERV1 66 184 -2254 610 219 65 0 chr12 20936393 20936548 -123345941 - L1PBa LINE L1 -6693 170 6 343 299 90 40 chr12 20936632 20936809 -123345680 + L2 LINE L2 2841 3026 -287 762 281 98 29 chr12 20936820 20937237 -123345252 - MLT1J2 LTR MaLR -3 447 2 477 349 60 5 chr12 20938474 20938689 -123343800 + MIR SINE MIR 1 227 -35 4848 130 32 46 chr12 20938698 20939179 -123343310 - L1PA16 LINE L1 0 6166 5679 2097 108 11 0 chr12 20939179 20939456 -123343033 - AluSg SINE Alu -30 280 1 4848 130 32 46 chr12 20939456 20939987 -123342502 - L1PA16 LINE L1 -487 5679 5167 306 252 8 84 chr12 20940023 20940142 -123342347 + L1MC/D LINE L1 5286 5395 -964 326 319 35 0 chr12 20940210 20940323 -123342166 + L1MC/D LINE L1 5548 5664 -2144 1399 200 13 10 chr12 20940355 20940665 -123341824 - L1P LINE L1 -982 5164 4854 243 291 12 70 chr12 20940687 20940773 -123341716 + L2 LINE L2 3191 3271 -1 548 247 50 108 chr12 20941432 20941813 -123340676 - L1MC4a LINE L1 -1902 5906 5548 181 0 69 0 chr12 20942885 20942914 -123339575 + (TTG)n Simple_repeat Simple_repeat 2 32 0 181 71 36 0 chr12 20943233 20943261 -123339228 + L2 LINE L2 3276 3304 -9 435 327 122 19 chr12 20943698 20944074 -123338415 - L2 LINE L2 -569 2745 2331 275 181 0 12 chr12 20944203 20944286 -123338203 + (TA)n Simple_repeat Simple_repeat 2 83 0 3385 41 5 0 chr12 20944493 20944908 -123337581 - L1PA4 LINE L1 -4 6151 5735 2280 114 0 0 chr12 20946320 20946657 -123335832 - AluSc SINE Alu 0 337 1 372 303 61 23 chr12 20947620 20947752 -123334737 + L2 LINE L2 2564 2700 -614 204 276 79 64 chr12 20947832 20948035 -123334454 + L2 LINE L2 3009 3214 -99 383 121 0 0 chr12 20949165 20949223 -123333266 - LTR35 LTR ERV1 -511 107 50 3038 106 151 16 chr12 20949412 20949957 -123332532 - LTR35 LTR ERV1 0 618 1 225 334 87 65 chr12 20950179 20950502 -123331987 + L2 LINE L2 1128 1457 -1857 230 277 15 0 chr12 20950909 20950974 -123331515 - MER5B DNA MER1_type -2 176 111 821 209 16 27 chr12 20950975 20951162 -123331327 + MER5A DNA MER1_type 1 185 -4 297 281 67 56 chr12 20954582 20954840 -123327649 - MLT1L LTR MaLR -297 318 1 216 0 0 0 chr12 20955241 20955265 -123327224 + (T)n Simple_repeat Simple_repeat 1 24 0 333 308 92 39 chr12 20955386 20955516 -123326973 + L2 LINE L2 3136 3272 0 1817 104 0 4 chr12 20957683 20957932 -123324557 + AluSg SINE Alu 54 301 -9 22 35 0 0 chr12 20959544 20959573 -123322916 + AT_rich Low_complexity Low_complexity 1 29 0 1730 143 39 52 chr12 20960206 20960514 -123321975 + AluSx SINE Alu 1 304 -8 303 337 129 51 chr12 20961188 20961600 -123320889 + L2 LINE L2 2828 3271 -1 1999 116 14 0 chr12 20961661 20961946 -123320543 - AluSx SINE Alu -21 291 3 464 150 34 122 chr12 20961974 20962121 -123320368 + MLT1E2 LTR MaLR 1 134 -492 608 205 26 0 chr12 20962129 20962246 -123320243 - LTR48B LTR ERV1 -524 120 1 1965 144 3 3 chr12 20963615 20963913 -123318576 - AluJb SINE Alu -14 298 1 261 0 0 0 chr12 20963994 20964023 -123318466 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 1674 104 5 0 chr12 20964857 20965079 -123317410 + AluSq SINE Alu 78 300 -13 1564 258 60 71 chr12 20965163 20965826 -123316663 + MER21B LTR ERV1 15 670 -193 483 230 162 7 chr12 20965829 20965977 -123316512 + MLT1A1 LTR MaLR 1 171 -194 437 253 56 56 chr12 20965978 20966156 -123316333 + MLT1K LTR MaLR 405 582 -6 2230 104 3 0 chr12 20966181 20966480 -123316009 + AluSg SINE Alu 1 300 -10 15945 78 7 1 chr12 20966689 20969678 -123312811 - L1PA7 LINE L1 -1 6153 3177 209 250 96 77 chr12 20970047 20970151 -123312338 + L2 LINE L2 3208 3313 0 988 211 177 52 chr12 20970352 20970893 -123311596 + MLT1G LTR MaLR 2 573 -17 874 126 0 7 chr12 20970945 20971088 -123311401 - L1MB7 LINE L1 -16 6168 6027 304 264 0 0 chr12 20971355 20971427 -123311062 - MIR SINE MIR -21 241 170 2523 68 0 0 chr12 20971713 20972020 -123310469 + AluY SINE Alu 1 307 -4 265 235 25 0 chr12 20972168 20972249 -123310240 + (TA)n Simple_repeat Simple_repeat 1 83 0 192 152 0 0 chr12 20972337 20972370 -123310119 + A-rich Low_complexity Low_complexity 1 33 0 252 140 60 0 chr12 20972885 20972935 -123309554 - MER116 DNA Mariner -26 54 2 391 150 0 0 chr12 20973188 20973248 -123309241 - MLT1J LTR MaLR 0 511 452 1447 150 101 28 chr12 20973292 20973578 -123308911 + AluJo SINE Alu 1 307 -5 285 277 130 47 chr12 20973653 20973692 -123308797 + L1MB4 LINE L1 5543 5577 -2231 1839 191 82 3 chr12 20973692 20974084 -123308405 - MSTA LTR MaLR -3 425 3 285 277 130 47 chr12 20974084 20974297 -123308192 + L1MB4 LINE L1 5577 5816 -1992 21 82 0 0 chr12 20974309 20974358 -123308131 + AT_rich Low_complexity Low_complexity 1 49 0 21494 157 11 20 chr12 20974389 20979417 -123303072 + L1P3 LINE L1 2 5060 -1401 763 182 7 7 chr12 20979517 20979682 -123302807 + AluSg/x SINE Alu 157 312 0 575 205 41 8 chr12 20979706 20979828 -123302661 - LTR9 LTR ERV1 -188 424 299 24 0 0 0 chr12 20979833 20979857 -123302632 + AT_rich Low_complexity Low_complexity 1 24 0 946 193 190 49 chr12 20979857 20980204 -123302285 - MSTD LTR MaLR 0 396 1 325 310 30 20 chr12 20980277 20980377 -123302112 - MIR SINE MIR -150 112 12 * 352 281 54 84 chr12 20980372 20980575 -123301914 - MIR SINE MIR -64 198 2 191 356 59 17 chr12 20980735 20980853 -123301636 + MIR SINE MIR 119 241 -21 194 233 151 0 chr12 20980870 20980943 -123301546 + L2 LINE L2 3189 3272 0 967 172 4 90 chr12 20981403 20981636 -123300853 - AluJb SINE Alu -14 298 86 74 32 0 0 chr12 20981786 20981881 -123300608 + AT_rich Low_complexity Low_complexity 1 95 0 283 157 0 0 chr12 20983079 20983130 -123299359 + L1MB4 LINE L1 6130 6180 0 399 154 77 0 chr12 20983910 20984001 -123298488 + L1MA8 LINE L1 6194 6291 0 1421 195 3 30 chr12 20984043 20984341 -123298148 + AluJo SINE Alu 1 290 -12 2139 100 27 0 chr12 20984364 20984663 -123297826 + AluSq SINE Alu 1 307 -6 25 90 0 0 chr12 20984717 20984784 -123297705 + AT_rich Low_complexity Low_complexity 1 67 0 186 43 0 0 chr12 20985387 20985410 -123297079 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 1592 164 35 22 chr12 20985484 20985835 -123296654 - MLT1B LTR MaLR -2 465 1 181 359 0 0 chr12 20985843 20985896 -123296593 - L2 LINE L2 -13 3259 3207 2442 63 0 0 chr12 20986412 20986699 -123295790 + AluY SINE Alu 1 287 -24 313 256 80 0 chr12 20987095 20987220 -123295269 - L1M4 LINE L1 -3710 2436 2302 1105 169 73 119 chr12 20987230 20987574 -123294915 + MLT1D LTR MaLR 1 328 -177 389 113 28 0 chr12 20987593 20987664 -123294825 - MLT1D LTR MaLR 0 505 433 2180 107 0 0 chr12 20988132 20988439 -123294050 - AluSx SINE Alu 0 311 5 252 0 0 0 chr12 20988740 20988768 -123293721 + (A)n Simple_repeat Simple_repeat 1 28 0 246 207 35 0 chr12 20988915 20988973 -123293516 + CT-rich Low_complexity Low_complexity 2 61 0 2213 85 19 7 chr12 20991235 20991542 -123290947 + AluY SINE Alu 1 311 0 405 0 0 0 chr12 20991596 20991641 -123290848 + (TG)n Simple_repeat Simple_repeat 2 46 0 296 172 31 16 chr12 20992076 20992140 -123290349 - MLT1K LTR MaLR -335 253 189 213 286 86 36 chr12 20992723 20992863 -123289626 - MIR SINE MIR -60 202 56 534 282 11 23 chr12 20992893 20993067 -123289422 - MER91B DNA MER1_type -15 175 4 2434 93 0 0 chr12 20996476 20996787 -123285702 + AluSq SINE Alu 1 311 -2 291 394 0 30 chr12 20997251 20997383 -123285106 + MIR SINE MIR 16 143 -65 480 286 66 39 chr12 20997666 20997848 -123284641 + MIR SINE MIR 32 218 -44 361 90 30 0 chr12 20999003 20999070 -123283419 + (GA)n Simple_repeat Simple_repeat 2 70 0 216 351 13 0 chr12 21000318 21000395 -123282094 - L2 LINE L2 -4 3309 3232 * 599 326 133 0 chr12 21000390 21000654 -123281835 + L2 LINE L2 1406 1704 -1610 519 213 29 0 chr12 21000686 21000822 -123281667 - LTR37A LTR ERV1 0 426 287 3869 147 28 35 chr12 21000822 21001565 -123280924 + L1MB3 LINE L1 5444 6181 -2 4529 156 42 38 chr12 21001696 21002635 -123279854 - L1MA8 LINE L1 0 6291 5350 1033 216 34 8 chr12 21002644 21002880 -123279609 - LTR37A LTR ERV1 -177 249 8 239 143 0 0 chr12 21002966 21003001 -123279488 + MLT1H LTR MaLR 73 107 -442 2286 94 0 16 chr12 21003001 21003309 -123279180 + AluSg SINE Alu 1 303 -7 1317 249 71 56 chr12 21003325 21003774 -123278715 + MLT1H LTR MaLR 94 549 0 465 329 6 12 chr12 21003775 21003939 -123278550 + L2 LINE L2 2403 2565 -749 33 90 0 0 chr12 21003960 21004049 -123278440 + AT_rich Low_complexity Low_complexity 1 89 0 279 342 37 68 chr12 21004065 21004226 -123278263 + L2 LINE L2 3117 3272 0 819 97 0 0 chr12 21004268 21004382 -123278107 + MER85 DNA T2_type 1 114 -25 209 297 14 40 chr12 21004550 21004624 -123277865 + L2 LINE L2 3234 3305 -8 298 330 28 0 chr12 21005315 21005421 -123277068 + Charlie2 DNA MER1_type 29 137 -2645 1241 201 201 65 chr12 21005530 21006228 -123276261 + Charlie2 DNA MER1_type 1856 2648 -214 21 0 0 0 chr12 21007193 21007214 -123275275 + AT_rich Low_complexity Low_complexity 1 21 0 719 127 0 8 chr12 21007814 21007932 -123274557 - Ricksha DNA DNA -7 3247 3131 890 171 7 0 chr12 21007944 21008096 -123274393 - FRAM SINE Alu -16 160 8 8479 126 30 22 chr12 21008103 21009035 -123273454 - Ricksha DNA DNA -121 3125 2175 4397 84 147 58 chr12 21009035 21009792 -123272697 - LTR12 LTR ERV1 -2 824 1 8479 126 30 22 chr12 21009792 21010280 -123272209 - Ricksha DNA DNA -1071 2175 1693 755 186 5 5 chr12 21010282 21010475 -123272014 - Ricksha DNA DNA -969 285 1 874 130 0 0 chr12 21011857 21011980 -123270509 + THE1B LTR MaLR 1 123 -241 1753 79 32 0 chr12 21062215 21062468 -123220021 - L1MA2 LINE L1 0 6304 6044 182 381 16 24 chr12 21062490 21062616 -123219873 - MIR SINE MIR -65 143 19 2340 45 0 36 chr12 21062937 21063245 -123219244 + AluY SINE Alu 1 297 -14 216 365 0 35 chr12 21063503 21063588 -123218901 + L2 LINE L2 3191 3272 0 435 207 97 62 chr12 21063747 21063892 -123218597 + MIR SINE MIR 57 206 -56 21 36 0 0 chr12 21064426 21064454 -123218035 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 21064566 21064587 -123217902 + AT_rich Low_complexity Low_complexity 1 21 0 194 317 113 28 chr12 21065154 21065296 -123217193 + MIR SINE MIR 59 212 -50 189 0 0 0 chr12 21065851 21065872 -123216617 + (A)n Simple_repeat Simple_repeat 1 21 0 473 276 92 27 chr12 21066457 21066642 -123215847 + MIR SINE MIR 47 243 -19 1407 249 42 9 chr12 21066903 21067237 -123215252 - MLT1A2 LTR MaLR 0 374 30 269 145 75 0 chr12 21067237 21067297 -123215192 - MLT1A1 LTR MaLR -291 74 1 225 183 0 0 chr12 21067834 21067894 -123214595 + (TA)n Simple_repeat Simple_repeat 2 61 0 222 37 0 0 chr12 21067894 21067921 -123214568 + (GA)n Simple_repeat Simple_repeat 2 28 0 230 399 6 12 chr12 21068732 21068895 -123213594 + L2 LINE L2 2692 2853 -461 2358 67 6 22 chr12 21068972 21069287 -123213202 - AluY SINE Alu -1 310 1 257 364 50 0 chr12 21070197 21070296 -123212193 + L2 LINE L2 3160 3263 -9 299 314 66 31 chr12 21070299 21070500 -123211989 - MIR SINE MIR -41 221 16 213 121 0 0 chr12 21070500 21070533 -123211956 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 202 433 28 11 chr12 21070713 21070893 -123211596 - L2 LINE L2 -214 3058 2876 5295 260 37 39 chr12 21071001 21075275 -123207214 - L1 LINE L1 -2958 3830 4 303 229 51 8 chr12 21075343 21075461 -123207028 - L1M4 LINE L1 -1031 5115 4993 549 347 129 27 chr12 21075703 21076325 -123206164 + L3 LINE CR1 187 871 -706 302 295 78 93 chr12 21076802 21076995 -123205494 - L2 LINE L2 0 3313 3124 3813 35 29 2 chr12 21077089 21077568 -123204921 + L1PA3 LINE L1 5664 6155 0 28 48 0 0 chr12 21077863 21077905 -123204584 + AT_rich Low_complexity Low_complexity 1 42 0 421 185 0 0 chr12 21077982 21078047 -123204442 + L1MCa LINE L1 460 524 -5902 1139 270 89 65 chr12 21078067 21078559 -123203930 - MLT1E LTR MaLR 0 593 90 7066 174 81 10 chr12 21078560 21080001 -123202488 + L1MC1 LINE L1 34 1577 -4849 14650 238 37 28 chr12 21080042 21085635 -123196854 + L1P4 LINE L1 7 6158 -658 1243 155 0 5 chr12 21085735 21085942 -123196547 + L1PA15 LINE L1 5958 6163 -2 1780 201 56 21 chr12 21085943 21086817 -123195672 + L1MC1 LINE L1 1701 2734 -3873 4380 160 54 12 chr12 21086831 21088234 -123194255 + L1MA7 LINE L1 4707 6280 -11 2670 227 36 87 chr12 21088264 21089454 -123193035 + L1MC1 LINE L1 2599 3727 -2699 12084 140 26 11 chr12 21089454 21091190 -123191299 - Tigger1 DNA MER2_type 0 2418 647 2186 169 52 5 chr12 21091190 21091593 -123190896 + MSTB LTR MaLR 1 422 -4 12084 140 26 11 chr12 21091593 21091855 -123190634 - Tigger1 DNA MER2_type -1771 647 390 3387 210 32 33 chr12 21091855 21091960 -123190529 + L1MC1 LINE L1 3964 4068 -2358 1533 124 151 112 chr12 21091960 21092372 -123190117 + MSTA LTR MaLR 1 428 0 3387 210 32 33 chr12 21092372 21092857 -123189632 + L1MC1 LINE L1 4068 4555 -1871 2227 108 51 17 chr12 21092857 21093209 -123189280 - THE1B LTR MaLR 0 364 1 3387 210 32 33 chr12 21093209 21093514 -123188975 + L1MC1 LINE L1 4555 4859 -1567 * 5708 192 19 15 chr12 21093512 21094985 -123187504 + L1MC1 LINE L1 5133 6613 0 454 243 301 12 chr12 21095304 21095477 -123187012 - MIR SINE MIR -28 234 12 215 296 52 22 chr12 21095525 21095660 -123186829 + L2 LINE L2 1914 2052 -1262 409 280 107 7 chr12 21095903 21096053 -123186436 - L2 LINE L2 -10 3303 3139 2164 163 5 25 chr12 21098719 21099117 -123183372 + MLT1B LTR MaLR 1 390 0 703 65 0 40 chr12 21099239 21099363 -123183126 + (TA)n Simple_repeat Simple_repeat 1 119 0 328 259 0 9 chr12 21099391 21099499 -123182990 - L1ME LINE L1 -304 5817 5711 190 349 0 16 chr12 21099501 21099564 -123182925 + MIR SINE MIR 47 108 -154 316 229 115 61 chr12 21100894 21101049 -123181440 - HAL1b LINE L1 -3 6118 1187 344 211 116 0 chr12 21101117 21101212 -123181277 + MIR SINE MIR 156 261 -1 21 36 0 0 chr12 21101478 21101506 -123180983 + AT_rich Low_complexity Low_complexity 1 28 0 356 286 53 8 chr12 21101622 21101755 -123180734 - MIR SINE MIR -2 260 122 2218 251 98 33 chr12 21101780 21102477 -123180012 + L1MB8 LINE L1 21 762 -6097 * 4690 189 44 20 chr12 21102473 21103789 -123178700 + L1MB8 LINE L1 5160 6528 -461 429 20 0 0 chr12 21103789 21103839 -123178650 + (CA)n Simple_repeat Simple_repeat 2 51 0 4690 189 44 20 chr12 21103839 21104280 -123178209 + L1MB8 LINE L1 6528 6957 -32 1768 168 50 25 chr12 21104281 21104639 -123177850 + MLT2D LTR ERVL 5 371 -43 280 93 19 19 chr12 21104642 21104696 -123177793 + (TA)n Simple_repeat Simple_repeat 1 54 0 260 126 89 0 chr12 21104705 21104757 -123177732 + MLT2C2 LTR ERVL 417 464 0 185 270 27 27 chr12 21104784 21104858 -123177631 - MIR SINE MIR -123 139 66 22 0 0 0 chr12 21105340 21105362 -123177127 + AT_rich Low_complexity Low_complexity 1 22 0 192 402 68 24 chr12 21107417 21107713 -123174776 - L3 LINE CR1 -81 1496 1188 22 35 0 0 chr12 21107716 21107745 -123174744 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 21107758 21107790 -123174699 + AT_rich Low_complexity Low_complexity 1 32 0 301 237 118 0 chr12 21110279 21110372 -123172117 + MIR SINE MIR 118 221 -41 21 0 0 0 chr12 21111232 21111253 -123171236 + AT_rich Low_complexity Low_complexity 1 21 0 288 242 0 0 chr12 21111722 21111817 -123170672 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 27 49 0 0 chr12 21112157 21112198 -123170291 + AT_rich Low_complexity Low_complexity 1 41 0 259 328 144 29 chr12 21112291 21112465 -123170024 - MIR SINE MIR -46 216 23 2089 104 0 14 chr12 21112704 21113027 -123169462 - AluSx SINE Alu 0 319 1 2089 117 3 0 chr12 21113059 21113342 -123169147 - AluSp SINE Alu -8 305 22 227 349 48 24 chr12 21113394 21113477 -123169012 - L2 LINE L2 -49 3223 3139 240 324 27 54 chr12 21114784 21114932 -123167557 - L2 LINE L2 -459 2855 2712 297 244 0 122 chr12 21116207 21116322 -123166167 + MER5A DNA MER1_type 9 109 -80 180 238 148 30 chr12 21117252 21117353 -123165136 - L2 LINE L2 -1 3312 3200 1951 132 24 3 chr12 21117354 21117642 -123164847 - AluSx SINE Alu -18 294 1 24 0 0 0 chr12 21117973 21117997 -123164492 + AT_rich Low_complexity Low_complexity 1 24 0 2534 46 0 3 chr12 21118395 21118697 -123163792 - AluY SINE Alu -10 301 1 233 365 21 36 chr12 21119775 21119967 -123162522 + L2 LINE L2 2658 2846 -468 236 407 106 21 chr12 21120403 21120639 -123161850 - L2 LINE L2 -1 3271 3016 23 33 0 0 chr12 21121803 21121833 -123160656 + AT_rich Low_complexity Low_complexity 1 30 0 5472 164 27 26 chr12 21122039 21122556 -123159933 + L1MC2 LINE L1 5186 5701 -643 2136 75 7 4 chr12 21122556 21122836 -123159653 - AluSc SINE Alu -28 281 1 5472 164 27 26 chr12 21122836 21123068 -123159421 + L1MC2 LINE L1 5701 5931 -413 1902 208 5 37 chr12 21123068 21123477 -123159012 + MSTD LTR MaLR 1 396 0 5472 164 27 26 chr12 21123477 21123875 -123158614 + L1MC2 LINE L1 5931 6336 -8 22 70 0 0 chr12 21124187 21124230 -123158259 + AT_rich Low_complexity Low_complexity 1 43 0 603 33 11 22 chr12 21126013 21126105 -123156384 + (TATAA)n Simple_repeat Simple_repeat 1 91 0 1063 266 67 36 chr12 21126108 21126529 -123155960 + L1MC4a LINE L1 5450 5883 -1925 20627 169 28 25 chr12 21126569 21128986 -123153503 - L1 LINE L1 -2018 5547 3140 1176 54 0 0 chr12 21128986 21129134 -123153355 - L1PA4 LINE L1 -3 6152 6005 20627 169 28 25 chr12 21129134 21132100 -123150389 - L1 LINE L1 -4425 3140 13 306 0 0 0 chr12 21132501 21132535 -123149954 + (TG)n Simple_repeat Simple_repeat 2 35 0 454 244 30 61 chr12 21132607 21132738 -123149751 + L2 LINE L2 3187 3313 0 34 24 0 0 chr12 21133788 21133829 -123148660 + AT_rich Low_complexity Low_complexity 1 41 0 644 270 22 22 chr12 21135099 21135277 -123147212 - MER5B DNA MER1_type 0 178 1 1172 190 20 92 chr12 21135300 21135605 -123146884 - L1M1 LINE L1 -7266 299 17 342 67 0 0 chr12 21135928 21135973 -123146516 + (TG)n Simple_repeat Simple_repeat 2 46 0 2277 107 10 0 chr12 21136162 21136470 -123146019 + AluSp SINE Alu 1 311 -2 788 164 14 14 chr12 21136617 21136757 -123145732 + LTR40a LTR ERVL 371 510 -9 305 221 0 107 chr12 21137608 21137730 -123144759 + MER31-int LTR ERV1 3394 3502 -1434 265 311 47 34 chr12 21138065 21138213 -123144276 + MER31-int LTR ERV1 3841 3990 -946 376 157 124 11 chr12 21138456 21138545 -123143944 + LTR37B LTR ERV1 64 162 -306 351 261 128 15 chr12 21138680 21138883 -123143606 + LTR37B LTR ERV1 243 468 0 5428 51 14 9 chr12 21139129 21139821 -123142668 + L1PA7 LINE L1 5402 6097 -57 582 83 0 0 chr12 21139858 21139942 -123142547 + L1PA7 LINE L1 6070 6153 -1 37 0 0 0 chr12 21140194 21140231 -123142258 + AT_rich Low_complexity Low_complexity 1 37 0 210 147 0 0 chr12 21140475 21140509 -123141980 + (TG)n Simple_repeat Simple_repeat 1 34 0 2383 139 8 5 chr12 21140509 21140883 -123141606 - THE1C LTR MaLR 0 375 1 9093 127 56 36 chr12 21140888 21142432 -123140057 - THE1C-int LTR MaLR -6 1574 1 2555 125 3 8 chr12 21142432 21142809 -123139680 - THE1C LTR MaLR 0 375 1 15739 145 36 12 chr12 21143393 21145754 -123136735 - Tigger4(Zombi) DNA MER2_type 0 2731 298 2350 173 26 17 chr12 21145754 21146176 -123136313 + MSTB LTR MaLR 1 426 0 15739 145 36 12 chr12 21146176 21146482 -123136007 - Tigger4(Zombi) DNA MER2_type -2433 298 1 928 192 0 0 chr12 21146547 21146719 -123135770 - AluJb SINE Alu 0 305 134 23 54 0 0 chr12 21146908 21146945 -123135544 + AT_rich Low_complexity Low_complexity 1 37 0 2156 133 32 3 chr12 21146960 21147305 -123135184 + THE1A LTR MaLR 1 355 0 11350 95 16 1 chr12 21147305 21148861 -123133628 + THE1A-int LTR MaLR 1 1580 0 2264 114 14 6 chr12 21148861 21149213 -123133276 + THE1A LTR MaLR 1 355 0 501 238 87 101 chr12 21149724 21150081 -123132408 - MLT2C1 LTR ERVL -1 396 45 * 596 227 13 32 chr12 21149942 21150096 -123132393 - MLT1E3 LTR MaLR -423 201 51 413 252 99 0 chr12 21150100 21150231 -123132258 - MLT2F LTR ERVL -519 144 1 4723 183 68 15 chr12 21150530 21151547 -123130942 - L1MC1 LINE L1 0 6333 5263 2498 69 0 0 chr12 21151571 21151876 -123130613 - AluY SINE Alu -6 305 1 21 0 0 0 chr12 21151912 21151933 -123130556 + AT_rich Low_complexity Low_complexity 1 21 0 1491 213 10 17 chr12 21151933 21152234 -123130255 - AluJo SINE Alu -13 299 1 25 0 0 0 chr12 21152375 21152400 -123130089 + AT_rich Low_complexity Low_complexity 1 25 0 1415 355 52 30 chr12 21152967 21153954 -123128535 + HERV16 LTR ERVL 3 1010 -3986 7122 168 42 8 chr12 21154016 21156316 -123126173 - L1MA4 LINE L1 -7 6475 4102 4639 223 33 33 chr12 21156309 21157822 -123124667 - L1MA4 LINE L1 -3841 2487 974 * 2357 150 57 8 chr12 21157822 21158223 -123124266 - MSTA LTR MaLR 0 428 8 5667 162 13 17 chr12 21158238 21159221 -123123268 - L1MA4 LINE L1 -4349 979 1 1176 218 33 64 chr12 21159224 21159554 -123122935 - MLT1A1 LTR MaLR -45 320 1 634 320 79 67 chr12 21159943 21160574 -123121915 + HERV16 LTR ERVL 1321 1959 -3037 1523 332 187 26 chr12 21161110 21161167 -123121322 + L2 LINE L2 1806 1852 -1461 2227 126 70 34 chr12 21161167 21161580 -123120909 - MSTA LTR MaLR 0 428 1 1523 332 187 26 chr12 21161580 21162809 -123119680 + L2 LINE L2 1852 3312 -1 221 314 8 51 chr12 21163264 21163382 -123119107 + MIR SINE MIR 86 198 -64 225 263 0 18 chr12 21163464 21163521 -123118968 + MIR SINE MIR 21 76 -186 242 121 0 0 chr12 21163696 21163729 -123118760 + MIR SINE MIR 114 146 -116 223 211 0 0 chr12 21163700 21163738 -123118751 + MIR3 SINE MIR 119 156 -52 * 26 0 0 0 chr12 21166035 21166061 -123116428 + AT_rich Low_complexity Low_complexity 1 26 0 388 338 27 27 chr12 21166165 21166384 -123116105 + L2 LINE L2 1599 1817 -1497 402 378 50 8 chr12 21166638 21166900 -123115589 - MLT1K LTR MaLR -165 423 151 276 336 56 8 chr12 21167047 21167172 -123115317 - MIR SINE MIR -130 132 2 563 165 21 0 chr12 21167201 21167298 -123115191 + AluJ/FLAM SINE Alu 2 100 -212 393 182 10 125 chr12 21167399 21167591 -123114898 + FAM SINE Alu 4 173 -2 201 184 0 41 chr12 21168064 21168113 -123114376 + L2 LINE L2 3267 3313 0 236 120 20 0 chr12 21168227 21168277 -123114212 + (CAGGA)n Simple_repeat Simple_repeat 5 55 0 508 180 5 53 chr12 21168284 21168473 -123114016 + G-rich Low_complexity Low_complexity 1 180 0 2967 165 88 2 chr12 21168544 21169066 -123113423 - HUERS-P2 LTR ERV1 -1487 1601 1035 1692 163 3 10 chr12 21169249 21169543 -123112946 - AluJb SINE Alu -12 300 9 187 157 39 0 chr12 21170282 21170333 -123112156 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 189 0 0 0 chr12 21170470 21170491 -123111998 + (GA)n Simple_repeat Simple_repeat 2 22 0 26 74 0 0 chr12 21171855 21171909 -123110580 + AT_rich Low_complexity Low_complexity 1 54 0 2484 199 47 34 chr12 21173353 21174007 -123108482 + L1ME1 LINE L1 4504 5166 -980 6292 225 21 24 chr12 21174019 21176744 -123105745 + L1PB3 LINE L1 4 1776 -5087 1280 117 11 5 chr12 21176768 21176956 -123105533 + AluSg/x SINE Alu 118 306 -6 12774 218 38 11 chr12 21176958 21178050 -123104439 + L1PB3 LINE L1 1791 2852 -4018 2271 83 3 10 chr12 21178050 21178183 -123104306 + AluY SINE Alu 1 133 -178 2338 94 13 0 chr12 21178183 21178491 -123103998 + AluSp SINE Alu 1 312 -1 2271 83 3 10 chr12 21178491 21178657 -123103832 + AluY SINE Alu 133 298 -13 12774 218 38 11 chr12 21178657 21182444 -123100045 + L1PB3 LINE L1 2852 6866 -4 1550 202 75 76 chr12 21182454 21182694 -123099795 + L1ME1 LINE L1 5152 5391 -775 1596 245 21 43 chr12 21182694 21183208 -123099281 + MLT1D LTR MaLR 3 505 0 1550 202 75 76 chr12 21183208 21183667 -123098822 + L1ME1 LINE L1 5391 5883 -283 358 42 21 0 chr12 21184604 21184652 -123097837 - MADE1 DNA Mariner -30 50 2 26 0 0 0 chr12 21185873 21185899 -123096590 + AT_rich Low_complexity Low_complexity 1 26 0 2103 115 6 22 chr12 21186008 21186321 -123096168 + AluSg SINE Alu 1 308 -2 229 320 100 31 chr12 21186400 21186790 -123095699 + L1ME LINE L1 5385 5801 -320 212 400 91 9 chr12 21187484 21187714 -123094775 + L2 LINE L2 111 359 -2955 730 308 116 11 chr12 21187739 21188119 -123094370 + LTR16A LTR ERVL 26 445 -5 631 285 45 0 chr12 21188125 21188304 -123094185 + HERV16 LTR ERVL 2 188 -4808 602 330 114 13 chr12 21188457 21188842 -123093647 + LTR16A LTR ERVL 1 424 -26 1426 170 49 59 chr12 21189732 21190038 -123092451 - AluJo SINE Alu -9 303 1 212 303 0 40 chr12 21190430 21190506 -123091983 - L2 LINE L2 -1834 1480 1408 2014 116 0 0 chr12 21191518 21191786 -123090703 - AluSx SINE Alu -8 304 37 229 346 89 34 chr12 21192210 21192389 -123090100 - L3 LINE CR1 -701 876 688 393 218 202 32 chr12 21193569 21193757 -123088732 - MIR SINE MIR -6 256 37 22 35 0 0 chr12 21194336 21194365 -123088124 + AT_rich Low_complexity Low_complexity 1 29 0 275 348 78 33 chr12 21195014 21195284 -123087205 - L2 LINE L2 -2482 832 551 7125 228 56 44 chr12 21196248 21199125 -123083364 + L1MC/D LINE L1 2636 5530 -745 2286 124 14 0 chr12 21199126 21199490 -123082999 - L1MA3 LINE L1 0 6305 5937 191 167 0 28 chr12 21199751 21199787 -123082702 - MIR SINE MIR -63 145 111 1789 175 34 0 chr12 21200276 21200567 -123081922 + AluJb SINE Alu 4 304 -8 373 269 13 20 chr12 21201083 21201232 -123081257 + HAL1b LINE L1 724 871 -477 853 260 86 27 chr12 21201438 21201730 -123080759 + Charlie1a DNA MER1_type 1 309 -1146 7055 155 40 2 chr12 21201736 21202882 -123079607 + L1MA3 LINE L1 18 1207 -6358 * 12219 159 39 25 chr12 21202880 21206741 -123075748 + L1MA3 LINE L1 2477 6393 -1172 2412 32 3 0 chr12 21206727 21207010 -123075479 + L1P2 LINE L1 5444 5727 -428 * 6394 81 24 0 chr12 21207112 21208245 -123074244 + L1PA4 LINE L1 4996 6151 -4 6268 142 12 17 chr12 21208248 21209588 -123072901 + L1MA3 LINE L1 6392 7724 0 3864 232 65 21 chr12 21209592 21210704 -123071785 + Charlie1a DNA MER1_type 293 1453 -2 863 177 143 51 chr12 21210884 21211178 -123071311 - L1MDa LINE L1 -4710 1830 1510 682 198 0 0 chr12 21211176 21211302 -123071187 - L1MDa LINE L1 -6400 140 15 * 233 241 12 48 chr12 21211302 21211385 -123071104 + L1 LINE L1 4890 4969 -1177 2177 110 10 3 chr12 21211417 21211725 -123070764 - AluSq SINE Alu -3 310 1 23 33 0 0 chr12 21211731 21211761 -123070728 + AT_rich Low_complexity Low_complexity 1 30 0 305 286 25 80 chr12 21211765 21211964 -123070525 + L1MC/D LINE L1 5028 5215 -931 815 275 40 40 chr12 21212003 21212349 -123070140 + L1MC/D LINE L1 5255 5600 -2208 297 280 60 0 chr12 21212350 21212450 -123070039 + L1MC/D LINE L1 5635 5740 -2068 290 116 74 8 chr12 21213605 21213726 -123068763 + GA-rich Low_complexity Low_complexity 1 129 0 297 75 0 0 chr12 21214099 21214139 -123068350 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr12 21214144 21214165 -123068324 + AT_rich Low_complexity Low_complexity 1 21 0 188 304 18 0 chr12 21214945 21215001 -123067488 - L2 LINE L2 0 3272 3216 183 353 101 8 chr12 21215058 21215177 -123067312 + MIR SINE MIR 16 145 -63 234 0 0 0 chr12 21216482 21216508 -123065981 + (CA)n Simple_repeat Simple_repeat 1 26 0 4336 97 3 7 chr12 21216793 21217399 -123065090 + L1P3 LINE L1 755 1358 -5103 196 239 22 0 chr12 21217897 21217943 -123064546 - L2 LINE L2 -12 3301 3255 193 258 0 11 chr12 21218009 21218191 -123064298 + (TA)n Simple_repeat Simple_repeat 1 180 0 464 321 33 22 chr12 21218195 21218379 -123064110 + L3 LINE CR1 1041 1226 -351 21 89 0 0 chr12 21218612 21218668 -123063821 + AT_rich Low_complexity Low_complexity 1 56 0 22 56 0 0 chr12 21218779 21218815 -123063674 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr12 21218952 21218990 -123063499 + AT_rich Low_complexity Low_complexity 1 38 0 38 51 0 0 chr12 21219423 21219482 -123063007 + AT_rich Low_complexity Low_complexity 1 59 0 306 217 0 0 chr12 21219523 21219592 -123062897 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 2437 67 0 3 chr12 21219592 21219889 -123062600 - AluY SINE Alu -15 296 1 220 35 0 0 chr12 21220124 21220153 -123062336 - L2 LINE L2 0 3313 3285 * 4182 301 156 22 chr12 21220150 21221633 -123060856 - L2 LINE L2 -572 2742 884 2832 14 26 0 chr12 21221633 21221983 -123060506 + L1PA2 LINE L1 5794 6152 -3 4182 301 156 22 chr12 21221983 21222635 -123059854 - L2 LINE L2 -2430 884 321 225 65 0 0 chr12 21222678 21222709 -123059780 + (TC)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr12 21222709 21222733 -123059756 + (CA)n Simple_repeat Simple_repeat 1 24 0 343 129 0 29 chr12 21222885 21222955 -123059534 + (TCC)n Simple_repeat Simple_repeat 3 70 0 406 329 58 13 chr12 21222956 21223181 -123059308 - LTR16C LTR ERVL -50 441 207 902 176 0 0 chr12 21223226 21223385 -123059104 - L1PB4 LINE L1 0 6156 5998 530 295 13 7 chr12 21223411 21223560 -123058929 + L2 LINE L2 680 829 -2485 279 261 94 36 chr12 21223705 21223843 -123058646 + MLT1L LTR MaLR 231 451 -159 1100 274 97 69 chr12 21224032 21224293 -123058196 + L1MEc LINE L1 1656 1908 -4632 2012 135 7 3 chr12 21224293 21224589 -123057900 + AluSq SINE Alu 1 297 -16 1100 274 97 69 chr12 21224589 21226001 -123056488 + L1MEc LINE L1 1908 3381 -3159 805 283 6 0 chr12 21226010 21226187 -123056302 - MER5A DNA MER1_type 0 189 12 30 45 0 0 chr12 21226216 21226260 -123056229 + AT_rich Low_complexity Low_complexity 1 44 0 617 162 0 9 chr12 21226308 21226413 -123056076 + Tigger2 DNA MER2_type 2 105 -2613 11895 134 56 96 chr12 21226514 21227187 -123055302 + Tigger2 DNA MER2_type 395 1094 -1624 1475 141 18 114 chr12 21227187 21227326 -123055163 + AluJb SINE Alu 1 91 -211 771 112 0 0 chr12 21227326 21227442 -123055047 + (TA)n Simple_repeat Simple_repeat 1 116 0 1475 141 18 114 chr12 21227442 21227636 -123054853 + AluJb SINE Alu 91 302 0 11895 134 56 96 chr12 21227636 21227898 -123054591 + Tigger2 DNA MER2_type 1094 1365 -1353 775 235 6 6 chr12 21227898 21228064 -123054425 - FRAM SINE Alu -10 166 1 11895 134 56 96 chr12 21228064 21229384 -123053105 + Tigger2 DNA MER2_type 1365 2718 0 671 280 101 3 chr12 21229554 21229850 -123052639 + L2 LINE L2 1181 1505 -1809 814 188 80 6 chr12 21229927 21230103 -123052386 + MER5A DNA MER1_type 1 189 0 2025 186 23 30 chr12 21230430 21230484 -123052005 - MLT1C LTR MaLR 0 467 414 1325 81 63 18 chr12 21230484 21230706 -123051783 + L1PA10 LINE L1 5937 6168 0 2025 186 23 30 chr12 21230706 21231086 -123051403 - MLT1C LTR MaLR -53 414 36 21 36 0 0 chr12 21231520 21231548 -123050941 + AT_rich Low_complexity Low_complexity 1 28 0 765 246 25 20 chr12 21231618 21231894 -123050595 - Charlie7 DNA MER1_type -2078 534 217 373 274 9 9 chr12 21231937 21232050 -123050439 + GA-rich Low_complexity Low_complexity 2 114 0 24 0 0 0 chr12 21234831 21234855 -123047634 + AT_rich Low_complexity Low_complexity 1 24 0 2289 85 20 7 chr12 21234924 21235049 -123047440 + AluY SINE Alu 1 123 -188 353 22 22 0 chr12 21235049 21235095 -123047394 + (CA)n Simple_repeat Simple_repeat 2 48 0 2289 85 20 7 chr12 21235095 21235274 -123047215 + AluY SINE Alu 123 309 -2 270 0 0 0 chr12 21235400 21235430 -123047059 + (A)n Simple_repeat Simple_repeat 1 30 0 2383 75 3 3 chr12 21236372 21236677 -123045812 - AluY SINE Alu -6 305 1 238 295 48 0 chr12 21237998 21238103 -123044386 + MIR SINE MIR 37 152 -62 220 217 277 12 chr12 21238249 21238332 -123044157 + MIR3 SINE MIR 2 106 -102 25 0 0 0 chr12 21239609 21239634 -123042855 + AT_rich Low_complexity Low_complexity 1 25 0 418 308 99 16 chr12 21239652 21239905 -123042584 + L1M4 LINE L1 4748 5021 -1125 6218 246 158 15 chr12 21239905 21242119 -123040370 + L1PA12 LINE L1 6 3071 -4510 595 167 61 122 chr12 21242127 21242390 -123040099 + L1MA9 LINE L1 6061 6307 -5 587 190 0 0 chr12 21242415 21242515 -123039974 + FLAM_A SINE Alu 20 119 -23 220 262 0 16 chr12 21242880 21242941 -123039548 - MER5A DNA MER1_type 0 189 130 2107 127 0 22 chr12 21244454 21244769 -123037720 + AluSc SINE Alu 1 308 -1 367 227 57 11 chr12 21246079 21246167 -123036322 - L2 LINE L2 -14 3299 3208 22 0 0 0 chr12 21246313 21246335 -123036154 + AT_rich Low_complexity Low_complexity 1 22 0 609 81 0 0 chr12 21247175 21247262 -123035227 + L1PA3 LINE L1 6069 6155 0 352 283 57 9 chr12 21247320 21247426 -123035063 - L2 LINE L2 -2 3311 3201 707 343 29 0 chr12 21247872 21248152 -123034337 + MLT1J LTR MaLR 224 511 0 483 259 177 6 chr12 21249784 21249942 -123032547 + MIR SINE MIR 2 186 -76 269 179 60 0 chr12 21251227 21251294 -123031195 + L1MA5A LINE L1 6224 6294 -3 785 238 29 0 chr12 21252227 21252399 -123030090 + MER45A DNA AcHobo 1 177 -1 23 54 0 0 chr12 21252540 21252577 -123029912 + AT_rich Low_complexity Low_complexity 1 37 0 203 269 19 0 chr12 21252695 21252747 -123029742 + CT-rich Low_complexity Low_complexity 3 55 0 324 374 89 0 chr12 21252750 21252873 -123029616 - L2 LINE L2 -23 3249 3116 199 398 56 64 chr12 21253444 21253786 -123028703 - L2 LINE L2 -15 3257 2919 269 192 19 0 chr12 21254321 21254373 -123028116 - L3 LINE CR1 -2 1575 1523 2180 102 0 3 chr12 21256172 21256518 -123025971 - AluSx SINE Alu 0 345 1 206 375 41 66 chr12 21257248 21257351 -123025138 + L2 LINE L2 2360 2464 -850 1264 226 107 3 chr12 21257351 21257678 -123024811 + MLT1A1 LTR MaLR 5 365 0 206 375 41 66 chr12 21257678 21257817 -123024672 + L2 LINE L2 2464 2596 -718 333 0 0 0 chr12 21258098 21258135 -123024354 + (CA)n Simple_repeat Simple_repeat 2 38 0 1697 175 110 22 chr12 21258725 21259189 -123023300 + MLT2A2 LTR ERVL 1 520 -34 858 142 53 60 chr12 21259225 21259527 -123022962 + HERV9 LTR ERV1 840 1139 -5757 294 213 0 0 chr12 21259528 21259589 -123022900 + HERV9 LTR ERV1 7504 7564 -835 * 4795 127 16 127 chr12 21259585 21261743 -123020746 + pTR5 LTR ERV1 504 2606 0 350 0 0 0 chr12 21261743 21261782 -123020707 + MLT2A2 LTR ERVL 415 453 0 2342 114 114 5 chr12 21261959 21262345 -123020144 - MSTA LTR MaLR 0 428 1 2081 181 58 29 chr12 21262773 21263221 -123019268 - LOR1b LTR ERV1 0 461 1 249 345 118 20 chr12 21263227 21263430 -123019059 + MIR SINE MIR 25 247 -15 289 339 16 0 chr12 21263503 21263624 -123018865 - L2 LINE L2 -223 3049 2927 231 81 0 27 chr12 21263630 21263667 -123018822 - LTR28 LTR ERV1 0 1020 985 510 224 238 14 chr12 21264643 21264853 -123017636 + MIR SINE MIR 3 259 -3 22 94 0 0 chr12 21266259 21266323 -123016166 + AT_rich Low_complexity Low_complexity 1 64 0 231 36 0 0 chr12 21267505 21267533 -123014956 + (CA)n Simple_repeat Simple_repeat 2 29 0 344 333 49 0 chr12 21268134 21268278 -123014211 + L1M3e LINE L1 301 451 -6579 346 207 0 69 chr12 21268429 21268545 -123013944 - L1ME LINE L1 -301 5820 5713 1336 125 5 0 chr12 21268572 21268764 -123013725 - MSTB1 LTR MaLR -13 419 227 764 125 0 0 chr12 21268785 21268897 -123013592 - MSTB1 LTR MaLR -320 112 1 486 180 0 23 chr12 21269283 21269411 -123013078 + CT-rich Low_complexity Low_complexity 3 127 0 2159 93 10 0 chr12 21269444 21269735 -123012754 + AluSx SINE Alu 1 294 -18 231 265 0 0 chr12 21270670 21270719 -123011770 - L3 LINE CR1 -19 1558 1510 191 235 0 15 chr12 21274750 21274818 -123007671 + (TG)n Simple_repeat Simple_repeat 1 67 0 678 181 147 17 chr12 21274919 21275096 -123007393 - Charlie5 DNA MER1_type 0 2623 2424 2373 198 2 2 chr12 21275196 21275656 -123006833 - L1P LINE L1 -1217 4929 4470 948 249 85 14 chr12 21275805 21276159 -123006330 - LTR37A LTR ERV1 0 426 48 1921 240 67 52 chr12 21276167 21276784 -123005705 + MLT1E2 LTR MaLR 1 626 0 1869 103 56 56 chr12 21278064 21278366 -123004123 + AluSx SINE Alu 1 302 -10 348 137 50 35 chr12 21278650 21278935 -123003554 + (TA)n Simple_repeat Simple_repeat 1 289 0 1170 155 27 133 chr12 21279037 21279404 -123003085 + MLT1A1 LTR MaLR 38 365 0 227 255 0 0 chr12 21279880 21279931 -123002558 + CT-rich Low_complexity Low_complexity 2 52 0 334 333 75 33 chr12 21280655 21280895 -123001594 + L2 LINE L2 2344 2593 -721 352 272 80 16 chr12 21280956 21281081 -123001408 + MIR SINE MIR 105 237 -25 2299 85 3 0 chr12 21281293 21281586 -123000903 - AluSp SINE Alu -16 297 4 212 226 16 57 chr12 21282541 21282665 -122999824 + (TTTA)n Simple_repeat Simple_repeat 4 122 0 606 180 8 23 chr12 21282673 21282801 -122999688 - FLAM_A SINE Alu -6 136 11 722 58 16 50 chr12 21282986 21283107 -122999382 - L1P LINE L1 -765 5409 5293 751 153 8 0 chr12 21283123 21283247 -122999242 - AluSq/x SINE Alu -187 125 1 4937 130 20 4 chr12 21283247 21284055 -122998434 - L1P LINE L1 -846 5300 4480 276 252 96 15 chr12 21284518 21284653 -122997836 + L1ME4a LINE L1 5976 6121 0 388 174 22 0 chr12 21287945 21288037 -122994452 + (TA)n Simple_repeat Simple_repeat 1 94 0 206 303 15 45 chr12 21288288 21288354 -122994135 - L3 LINE CR1 -80 1497 1434 194 360 50 29 chr12 21288359 21288498 -122993991 - L3 LINE CR1 -418 1159 1018 247 333 72 13 chr12 21288652 21288805 -122993684 - L3 LINE CR1 -580 997 836 593 246 0 0 chr12 21289001 21289168 -122993321 + FLAM_A SINE Alu 2 168 0 4054 130 47 14 chr12 21289179 21289748 -122992741 + L1MA4 LINE L1 5564 6162 -138 2134 123 25 38 chr12 21289748 21290115 -122992374 - THE1B LTR MaLR -2 362 1 4054 130 47 14 chr12 21290115 21290254 -122992235 + L1MA4 LINE L1 6162 6295 -5 683 239 122 32 chr12 21291367 21291555 -122990934 + MER20 DNA MER1_type 1 205 -14 227 266 229 0 chr12 21291667 21291776 -122990713 + MIR SINE MIR 129 262 0 461 122 21 64 chr12 21291925 21292113 -122990376 + (TA)n Simple_repeat Simple_repeat 1 180 0 720 253 0 35 chr12 21292355 21292525 -122989964 - FRAM SINE Alu -2 164 1 493 307 58 70 chr12 21292922 21293251 -122989238 + L3 LINE CR1 612 936 -641 195 339 0 0 chr12 21293303 21293359 -122989130 + L3 LINE CR1 1059 1114 -463 390 278 110 48 chr12 21293372 21293581 -122988908 + MIR SINE MIR 38 259 -3 348 246 82 16 chr12 21293574 21293696 -122988793 - MIR SINE MIR -24 238 109 * 303 133 0 0 chr12 21294256 21294301 -122988188 + Charlie5 DNA MER1_type 165 209 -2403 21 57 0 0 chr12 21297606 21297641 -122984848 + AT_rich Low_complexity Low_complexity 1 35 0 341 328 11 101 chr12 21298848 21299037 -122983452 - MER5A DNA MER1_type -2 187 16 378 232 0 89 chr12 21299244 21299356 -122983133 + MIR SINE MIR 88 189 -73 201 298 53 61 chr12 21299441 21299572 -122982917 + MIR SINE MIR 98 227 -35 542 276 131 45 chr12 21300514 21300866 -122981623 - L2 LINE L2 -462 2852 2471 393 364 18 12 chr12 21301726 21301891 -122980598 + MIR3 SINE MIR 15 180 -28 264 310 54 16 chr12 21302149 21302278 -122980211 - ERVL LTR ERVL -2046 3718 3585 498 226 31 92 chr12 21302337 21302504 -122979985 - MER112 DNA MER1_type -14 246 97 1648 165 7 37 chr12 21302504 21302824 -122979665 + AluSx SINE Alu 1 311 0 498 226 31 92 chr12 21302824 21302915 -122979574 - MER112 DNA MER1_type -163 97 2 950 341 40 17 chr12 21302917 21303086 -122979403 - ERVL LTR ERVL -2271 3493 3329 1498 50 0 0 chr12 21303086 21303268 -122979221 + AluY SINE Alu 119 300 -11 950 341 40 17 chr12 21303268 21303573 -122978916 - ERVL LTR ERVL -2435 3329 3008 254 296 31 0 chr12 21303588 21303686 -122978803 - L1M4 LINE L1 -3872 2274 2174 761 286 38 32 chr12 21304523 21304951 -122977538 + L1MEc LINE L1 948 1476 -1014 2211 94 7 0 chr12 21304951 21305248 -122977241 + AluSq SINE Alu 1 299 -14 761 286 38 32 chr12 21305248 21305549 -122976940 + L1MEc LINE L1 1476 1774 -716 907 271 23 55 chr12 21305764 21306074 -122976415 - HsTC2c DNA Tc2 -3 726 427 790 290 114 38 chr12 21306078 21307355 -122975134 + L1MEc LINE L1 2378 3752 -2377 1089 299 84 44 chr12 21307359 21309182 -122973307 + L1MEc LINE L1 4038 5934 -219 198 0 0 0 chr12 21309758 21309780 -122972709 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2579 45 3 0 chr12 21309794 21310103 -122972386 + AluY SINE Alu 1 310 -1 543 163 0 0 chr12 21310110 21310196 -122972293 - FRAM SINE Alu -57 119 34 752 158 0 8 chr12 21310449 21310582 -122971907 + FLAM_A SINE Alu 11 142 0 404 254 8 40 chr12 21310676 21310802 -122971687 + FLAM_A SINE Alu 13 134 -8 21 0 0 0 chr12 21310891 21310912 -122971577 + AT_rich Low_complexity Low_complexity 1 21 0 2905 152 18 2 chr12 21311952 21312446 -122970043 - L1MB3 LINE L1 0 6183 5682 2383 62 0 37 chr12 21313543 21313864 -122968625 - AluY SINE Alu 0 311 3 309 275 221 0 chr12 21314024 21314173 -122968316 - MIR SINE MIR -44 218 37 251 369 5 56 chr12 21314181 21314376 -122968113 + L2 LINE L2 2465 2649 -665 1889 119 44 7 chr12 21315304 21315597 -122966892 - AluSx SINE Alu -8 304 1 180 316 94 43 chr12 21315609 21315726 -122966763 - MER5B DNA MER1_type -6 172 50 185 132 26 0 chr12 21316994 21317032 -122965457 + (TA)n Simple_repeat Simple_repeat 1 39 0 194 256 0 0 chr12 21317611 21317650 -122964839 + L2 LINE L2 3192 3230 -83 198 0 0 0 chr12 21317975 21317997 -122964492 + (T)n Simple_repeat Simple_repeat 1 22 0 4955 168 71 31 chr12 21318729 21320203 -122962286 - L1MA9 LINE L1 0 6312 4792 410 297 63 17 chr12 21320293 21320468 -122962021 + MIR SINE MIR 74 256 -6 23 33 0 0 chr12 21320860 21320890 -122961599 + AT_rich Low_complexity Low_complexity 1 30 0 1998 132 10 13 chr12 21321057 21321367 -122961122 - AluSg SINE Alu -1 309 1 204 396 43 14 chr12 21322745 21322884 -122959605 - L3 LINE CR1 -7 1570 1428 211 294 64 19 chr12 21323117 21323327 -122959162 - L3 LINE CR1 -187 1390 1117 233 214 36 0 chr12 21323855 21323911 -122958578 - HsTC2 DNA Tc2 -1812 86 29 205 294 0 0 chr12 21323924 21323975 -122958514 - L3 LINE CR1 -450 1127 1077 1829 187 6 8 chr12 21324273 21324631 -122957858 - L1MB3 LINE L1 -2 6181 5825 443 320 59 106 chr12 21325838 21326121 -122956368 - L2 LINE L2 -58 3214 2919 1208 106 5 25 chr12 21326121 21326320 -122956169 - MER107 DNA MER1_type 0 197 3 443 320 59 106 chr12 21326320 21326913 -122955576 - L2 LINE L2 -353 2919 2358 1957 100 3 60 chr12 21328204 21328548 -122953941 - AluSx SINE Alu 0 327 1 361 333 16 8 chr12 21328668 21328794 -122953695 + MIR SINE MIR 23 149 -113 218 171 0 0 chr12 21329214 21329249 -122953240 + (TG)n Simple_repeat Simple_repeat 2 36 0 260 150 0 0 chr12 21329288 21329328 -122953161 - L2 LINE L2 -7 3265 3226 255 123 48 34 chr12 21330060 21330206 -122952283 + (TA)n Simple_repeat Simple_repeat 2 149 0 209 182 73 0 chr12 21330212 21330267 -122952222 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 267 145 65 22 chr12 21330274 21330412 -122952077 + (TATAG)n Simple_repeat Simple_repeat 2 145 0 39 50 0 0 chr12 21330417 21330477 -122952012 + AT_rich Low_complexity Low_complexity 1 60 0 616 194 78 2 chr12 21330799 21330976 -122951513 - MLT1D LTR MaLR 0 505 286 226 79 26 0 chr12 21330982 21331020 -122951469 + L1MA9 LINE L1 6265 6303 -9 297 318 11 0 chr12 21331448 21331536 -122950953 + L2 LINE L2 3178 3266 -6 202 391 29 22 chr12 21332114 21332252 -122950237 - L2 LINE L2 -236 3036 2898 221 292 15 0 chr12 21332745 21332810 -122949679 - MIR SINE MIR 0 262 197 541 277 130 12 chr12 21334224 21334477 -122948012 + L2 LINE L2 3023 3305 -8 512 330 106 13 chr12 21334556 21334792 -122947697 - MIR SINE MIR 0 262 5 224 336 112 9 chr12 21335005 21335121 -122947368 - MIR3 SINE MIR -8 200 73 590 353 65 14 chr12 21335684 21336123 -122946366 - L2 LINE L2 -147 3166 2701 1272 203 49 36 chr12 21336138 21336593 -122945896 + MLT2B1 LTR ERVL 4 512 -8 882 132 0 0 chr12 21337043 21337179 -122945310 + L1PA10 LINE L1 6027 6162 -6 28738 144 19 61 chr12 21337295 21343742 -122938747 + L1PA16 LINE L1 1 6164 -2 24 32 0 0 chr12 21345282 21345313 -122937176 + AT_rich Low_complexity Low_complexity 1 31 0 1398 103 0 0 chr12 21346738 21346922 -122935567 - AluSg/x SINE Alu -18 294 111 1497 77 5 0 chr12 21347144 21347339 -122935150 - AluSg/x SINE Alu -6 306 111 2300 48 0 64 chr12 21347561 21347875 -122934614 - AluY SINE Alu -17 294 1 491 295 111 25 chr12 21348457 21348701 -122933788 - MLT1K LTR MaLR -2 586 322 239 174 22 0 chr12 21348765 21348811 -122933678 - MLT1K LTR MaLR -359 229 183 249 250 0 0 chr12 21349690 21349738 -122932751 + MIR SINE MIR 84 131 -77 525 268 117 11 chr12 21349866 21350045 -122932444 - MLT1I LTR MaLR -17 392 195 659 225 104 12 chr12 21350737 21350910 -122931579 + MER5A DNA MER1_type 1 189 0 324 48 0 0 chr12 21353453 21353495 -122928994 + (CA)n Simple_repeat Simple_repeat 1 42 0 2325 146 68 2 chr12 21353716 21354113 -122928376 - MSTA LTR MaLR 0 428 6 264 196 54 0 chr12 21354527 21354583 -122927906 + MER20B DNA MER1_type 723 781 -2 230 267 0 0 chr12 21355334 21355394 -122927095 + 5S rRNA rRNA 31 90 -31 1116 15 0 0 chr12 21356822 21356952 -122925537 + L1PA3 LINE L1 6026 6155 0 1689 140 67 0 chr12 21358195 21358482 -122924007 + MER7A DNA MER2_type 8 312 -34 316 137 0 0 chr12 21358474 21358525 -122923964 + MSTB2 LTR MaLR 407 457 0 * 1078 299 62 76 chr12 21358525 21358940 -122923549 - L2 LINE L2 -27 3286 2867 650 228 88 16 chr12 21358940 21359133 -122923356 - MER3 DNA MER1_type -1 208 2 1078 299 62 76 chr12 21359133 21359728 -122922761 - L2 LINE L2 -446 2867 2291 21 36 0 0 chr12 21360442 21360470 -122922019 + AT_rich Low_complexity Low_complexity 1 28 0 184 153 0 51 chr12 21362305 21362364 -122920125 + CT-rich Low_complexity Low_complexity 4 59 0 225 154 0 0 chr12 21363020 21363059 -122919430 + (CGTG)n Simple_repeat Simple_repeat 3 41 0 270 73 0 0 chr12 21364227 21364268 -122918221 + (T)n Simple_repeat Simple_repeat 1 41 0 28 29 0 0 chr12 21365654 21365689 -122916800 + AT_rich Low_complexity Low_complexity 1 35 0 2813 123 0 2 chr12 21417405 21417828 -122864661 - HERVH LTR ERV1 -2804 4909 4488 3236 100 4 4 chr12 21417830 21418319 -122864170 - HERVH LTR ERV1 -3720 3993 3505 860 136 27 0 chr12 21418323 21418470 -122864019 - HERVH LTR ERV1 -4423 3290 3140 * 14532 138 16 14 chr12 21418449 21421126 -122861363 - HERVH LTR ERV1 -4718 2995 1 3484 67 2 7 chr12 21421128 21421578 -122860911 - LTR7 LTR ERV1 -2 448 1 952 45 0 0 chr12 21421578 21421690 -122860799 - L1P LINE L1 -6030 116 5 2512 196 31 21 chr12 21421916 21422498 -122859991 - L1 LINE L1 -1975 4171 3584 2498 229 22 27 chr12 21422544 21423285 -122859204 - L1 LINE L1 -3128 3018 2282 2221 82 27 0 chr12 21423285 21423578 -122858911 - AluSc SINE Alu -8 301 1 725 227 0 27 chr12 21423595 21423745 -122858744 - FRAM SINE Alu -30 146 1 22 35 0 0 chr12 21424212 21424241 -122858248 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr12 21424250 21424280 -122858209 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 21424758 21424779 -122857710 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 21425304 21425339 -122857150 + AT_rich Low_complexity Low_complexity 1 35 0 352 277 121 40 chr12 21425594 21426080 -122856409 + L1 LINE L1 2759 3322 -2824 558 138 0 0 chr12 21426157 21426266 -122856223 + L1P LINE L1 5254 5362 -804 2288 71 0 0 chr12 21426269 21426569 -122855920 + AluY SINE Alu 1 300 0 236 264 28 47 chr12 21426733 21426839 -122855650 + L1 LINE L1 3589 3692 -2454 342 0 0 0 chr12 21427116 21427154 -122855335 + (T)n Simple_repeat Simple_repeat 1 38 0 967 219 0 5 chr12 21427793 21427989 -122854500 + HERVH LTR ERV1 4955 5149 -2564 * 1121 125 87 14 chr12 21427986 21428194 -122854295 + HERVH LTR ERV1 5597 5819 -1894 2489 87 45 13 chr12 21428194 21428572 -122853917 + HERVH LTR ERV1 7324 7713 0 3359 69 2 7 chr12 21428572 21429022 -122853467 + LTR7 LTR ERV1 1 448 -2 42213 45 3 2 chr12 21429024 21435066 -122847423 + L1PA3 LINE L1 112 6155 0 4308 184 55 37 chr12 21435060 21436190 -122846299 + L1 LINE L1 4156 5305 -841 * 1710 132 27 14 chr12 21436203 21436499 -122845990 - L1MA4A LINE L1 -335 5968 5669 6373 130 117 100 chr12 21436566 21438390 -122844099 - pTR5 LTR ERV1 0 8399 504 15560 25 2 0 chr12 21438490 21441096 -122841393 + L1PA3 LINE L1 3544 6153 -2 3188 170 63 5 chr12 21441116 21441781 -122840708 - L1 LINE L1 -1548 5300 4597 7628 186 54 39 chr12 21441803 21442831 -122839658 - L1 LINE L1 -2607 4241 3230 296 77 0 0 chr12 21442831 21442870 -122839619 + U2 snRNA snRNA 4 42 -146 7628 186 54 39 chr12 21442870 21443735 -122838754 - L1 LINE L1 -3618 3230 2379 2449 73 0 0 chr12 21443735 21444035 -122838454 - AluY SINE Alu -11 300 1 7628 186 54 39 chr12 21444035 21444690 -122837799 - L1 LINE L1 -4469 2379 1735 2196 101 0 0 chr12 21444690 21444976 -122837513 - AluY SINE Alu -6 305 20 7628 186 54 39 chr12 21444976 21445678 -122836811 - L1 LINE L1 -5113 1735 2 2352 88 0 3 chr12 21446479 21446784 -122835705 - AluY SINE Alu -7 304 1 293 70 42 28 chr12 21447089 21447160 -122835329 + (TATAA)n Simple_repeat Simple_repeat 1 72 0 21 0 0 0 chr12 21447244 21447265 -122835224 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr12 21448063 21448107 -122834382 + (TG)n Simple_repeat Simple_repeat 1 44 0 182 62 31 0 chr12 21448956 21448988 -122833501 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 32 91 0 0 chr12 21451261 21451349 -122831140 + AT_rich Low_complexity Low_complexity 1 88 0 2266 105 13 0 chr12 21452367 21452672 -122829817 + AluSp SINE Alu 1 309 -4 24 32 0 0 chr12 21453198 21453229 -122829260 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr12 21455151 21455173 -122827316 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr12 21456029 21456051 -122826438 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr12 21456491 21456513 -122825976 + AT_rich Low_complexity Low_complexity 1 22 0 32 67 0 0 chr12 21456570 21456630 -122825859 + AT_rich Low_complexity Low_complexity 1 60 0 279 0 0 0 chr12 21457279 21457310 -122825179 + (CA)n Simple_repeat Simple_repeat 1 31 0 953 35 0 0 chr12 21457856 21457972 -122824517 - L1PA4 LINE L1 -14 6141 6026 362 343 43 39 chr12 21458007 21458287 -122824202 + ERVL LTR ERVL 5043 5323 -441 335 209 55 18 chr12 21458418 21458528 -122823961 - L1MC5 LINE L1 -48 7913 7800 212 290 10 0 chr12 21458549 21458649 -122823840 + (TA)n Simple_repeat Simple_repeat 2 102 0 1063 209 36 111 chr12 21458680 21459267 -122823222 - L1MC5 LINE L1 -247 7714 7172 1463 141 12 8 chr12 21459271 21459519 -122822970 + L1PA16 LINE L1 5911 6159 -7 801 228 111 96 chr12 21460028 21460638 -122821851 - L1MC5 LINE L1 -785 7176 6618 1168 305 114 0 chr12 21460730 21461117 -122821372 - L2 LINE L2 -1093 2221 1791 762 331 141 14 chr12 21461118 21461614 -122820875 - L2 LINE L2 -1766 1548 990 1569 233 70 12 chr12 21461619 21462048 -122820441 + MLT1C LTR MaLR 6 459 -8 604 248 23 8 chr12 21462050 21462183 -122820306 + MER58B DNA MER1_type 205 339 -2 22 0 0 0 chr12 21462712 21462734 -122819755 + AT_rich Low_complexity Low_complexity 1 22 0 236 324 3 83 chr12 21462760 21462917 -122819572 - MIR SINE MIR -52 210 66 185 62 0 31 chr12 21463295 21463327 -122819162 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 301 330 92 12 chr12 21464079 21464252 -122818237 + MIR SINE MIR 15 201 -61 311 167 0 0 chr12 21465525 21465579 -122816910 - MER103 DNA DNA -94 72 19 480 297 151 25 chr12 21465642 21465999 -122816490 - L1 LINE L1 -2111 4035 3634 229 213 71 85 chr12 21466480 21466621 -122815868 - HAL1 LINE L1 -79 2428 2290 21 0 0 0 chr12 21467600 21467621 -122814868 + AT_rich Low_complexity Low_complexity 1 21 0 230 317 50 0 chr12 21468062 21468122 -122814367 - L2 LINE L2 -12 3301 3239 1299 203 88 21 chr12 21468215 21468555 -122813934 - L1M2 LINE L1 -678 5634 5272 1235 51 6 0 chr12 21468566 21468724 -122813765 - L1PA5 LINE L1 -3 6151 5993 358 213 0 0 chr12 21470634 21470695 -122811794 - MER5A DNA MER1_type -118 71 11 22 0 0 0 chr12 21470965 21470987 -122811502 + AT_rich Low_complexity Low_complexity 1 22 0 601 320 54 24 chr12 21471383 21472062 -122810427 - L1M2 LINE L1 -1832 4314 3596 318 26 0 0 chr12 21472062 21472101 -122810388 + (TG)n Simple_repeat Simple_repeat 1 39 0 185 62 0 31 chr12 21472338 21472370 -122810119 + (TA)n Simple_repeat Simple_repeat 1 31 0 413 326 27 7 chr12 21473039 21473186 -122809303 + MER5A DNA MER1_type 1 150 -39 194 270 32 16 chr12 21475065 21475128 -122807361 - MIR3 SINE MIR -2 206 143 474 293 8 8 chr12 21475620 21475753 -122806736 + MIR SINE MIR 81 213 -49 221 260 16 134 chr12 21476055 21476182 -122806307 - L2 LINE L2 -18 3295 3184 1031 307 57 18 chr12 21476446 21476883 -122805606 - L2 LINE L2 -48 3265 2812 246 252 402 0 chr12 21476897 21477024 -122805465 - MER5A DNA MER1_type -3 186 9 759 230 28 6 chr12 21477033 21477211 -122805278 - L2 LINE L2 -517 2797 2616 22 35 0 0 chr12 21477634 21477663 -122804826 + AT_rich Low_complexity Low_complexity 1 29 0 2874 9 0 0 chr12 21477713 21478031 -122804458 + AluYb8 SINE Alu 1 318 0 1272 34 0 0 chr12 21478309 21478458 -122804031 - AluY SINE Alu 0 311 163 1386 107 70 5 chr12 21479085 21479300 -122803189 + MER30 DNA MER1_type 1 229 -1 2702 10 0 0 chr12 21481192 21481492 -122800997 - AluY SINE Alu -11 300 1 970 188 61 0 chr12 21481795 21481992 -122800497 + MER3 DNA MER1_type 1 209 0 293 351 9 0 chr12 21482332 21482446 -122800043 + MIR SINE MIR 145 259 -3 22 0 0 0 chr12 21485467 21485489 -122797000 + AT_rich Low_complexity Low_complexity 1 22 0 393 22 0 0 chr12 21485759 21485805 -122796684 + (T)n Simple_repeat Simple_repeat 1 46 0 251 250 118 96 chr12 21486818 21486954 -122795535 - L2 LINE L2 0 3313 3175 13579 173 19 26 chr12 21487695 21487879 -122794610 + Tigger1 DNA MER2_type 1 185 -2233 303 28 0 0 chr12 21487879 21487915 -122794574 + (TTA)n Simple_repeat Simple_repeat 1 36 0 13579 173 19 26 chr12 21487915 21489533 -122792956 + Tigger1 DNA MER2_type 185 1784 -634 2488 62 3 0 chr12 21489533 21489837 -122792652 + AluSp SINE Alu 1 305 -8 13579 173 19 26 chr12 21489837 21490468 -122792021 + Tigger1 DNA MER2_type 1784 2418 0 231 192 55 55 chr12 21493137 21493210 -122789279 - L1ME2 LINE L1 -9 6155 6083 369 0 0 0 chr12 21493229 21493270 -122789219 + (TA)n Simple_repeat Simple_repeat 2 42 0 234 0 0 0 chr12 21493270 21493296 -122789193 + (TG)n Simple_repeat Simple_repeat 2 27 0 1074 277 52 6 chr12 21493301 21493664 -122788825 - L1ME3 LINE L1 -93 6069 5693 38 68 0 0 chr12 21493664 21493737 -122788752 + AT_rich Low_complexity Low_complexity 1 73 0 340 161 83 12 chr12 21493751 21493919 -122788570 + (TA)n Simple_repeat Simple_repeat 1 180 0 313 161 77 19 chr12 21493843 21493998 -122788491 + (TTATA)n Simple_repeat Simple_repeat 1 164 0 * 38 75 0 0 chr12 21494002 21494082 -122788407 + AT_rich Low_complexity Low_complexity 1 80 0 247 179 24 32 chr12 21494086 21494209 -122788280 + (TATAA)n Simple_repeat Simple_repeat 3 124 0 214 198 62 10 chr12 21494221 21494317 -122788172 + (TTATA)n Simple_repeat Simple_repeat 3 103 0 35 41 0 0 chr12 21494431 21494480 -122788009 + AT_rich Low_complexity Low_complexity 1 49 0 776 275 27 9 chr12 21494486 21494708 -122787781 - L1ME3 LINE L1 -526 5636 5411 239 302 121 13 chr12 21494878 21495027 -122787462 + MIR SINE MIR 92 256 -6 22 0 0 0 chr12 21495498 21495520 -122786969 + AT_rich Low_complexity Low_complexity 1 22 0 5373 168 14 17 chr12 21495520 21496315 -122786174 - L1PA16 LINE L1 -7 6159 5359 2380 46 0 0 chr12 21496315 21496626 -122785863 - AluY SINE Alu 0 311 1 5373 168 14 17 chr12 21496626 21497160 -122785329 - L1PA16 LINE L1 -807 5359 4825 26 64 0 0 chr12 21497674 21497721 -122784768 + AT_rich Low_complexity Low_complexity 1 47 0 1487 231 40 23 chr12 21499635 21500103 -122782386 - LTR22 LTR ERVK -4 454 1 596 274 14 14 chr12 21500750 21500896 -122781593 - MIR SINE MIR -105 157 12 476 270 170 35 chr12 21501027 21501257 -122781232 + MIR SINE MIR 2 262 0 264 283 85 19 chr12 21502267 21502373 -122780116 + MIR SINE MIR 118 230 -32 430 318 74 5 chr12 21503560 21503749 -122778740 - MARNA DNA Mariner -43 543 342 247 286 39 0 chr12 21503761 21503838 -122778651 - MARNA DNA Mariner -474 112 33 476 282 18 31 chr12 21504124 21504287 -122778202 + MIR3 SINE MIR 38 198 -10 272 359 33 0 chr12 21504675 21504767 -122777722 - L2 LINE L2 -30 3242 3148 227 343 127 12 chr12 21506282 21506448 -122776041 - MIR3 SINE MIR 0 208 24 1704 177 30 35 chr12 21506674 21507041 -122775448 - MLT1A1 LTR MaLR 0 365 1 221 250 0 0 chr12 21507419 21507467 -122775022 + T-rich Low_complexity Low_complexity 1 48 0 274 349 53 8 chr12 21507581 21507713 -122774776 - MIR SINE MIR -72 190 53 595 328 61 77 chr12 21507986 21508752 -122773737 - L2 LINE L2 -3 3310 2543 282 29 0 0 chr12 21509601 21509636 -122772853 + (TA)n Simple_repeat Simple_repeat 2 36 0 1981 157 24 8 chr12 21509732 21510101 -122772388 - THE1C LTR MaLR 0 375 1 1471 238 64 31 chr12 21510102 21510771 -122771718 - Charlie2 DNA MER1_type -4 2858 2168 195 42 0 0 chr12 21511343 21511367 -122771122 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2080 64 18 25 chr12 21511370 21511652 -122770837 - AluY SINE Alu -31 280 1 211 241 0 17 chr12 21512309 21512367 -122770122 + CT-rich Low_complexity Low_complexity 3 59 0 531 281 45 9 chr12 21512522 21512743 -122769746 + Charlie2a DNA MER1_type 611 839 -2023 29 28 0 0 chr12 21512780 21512816 -122769673 + AT_rich Low_complexity Low_complexity 1 36 0 1739 265 107 73 chr12 21513254 21514360 -122768129 + L1MC5 LINE L1 5254 6321 -1640 2309 109 0 0 chr12 21514360 21514671 -122767818 + AluSx SINE Alu 1 311 -1 1739 265 107 73 chr12 21514671 21515960 -122766529 + L1MC5 LINE L1 6321 7793 -168 1921 136 0 14 chr12 21515960 21516255 -122766234 + AluSx SINE Alu 1 291 -21 1739 265 107 73 chr12 21516255 21516383 -122766106 + L1MC5 LINE L1 7793 7915 -46 786 271 70 24 chr12 21516671 21517054 -122765435 - L1MC5 LINE L1 -86 7875 7475 1777 257 78 47 chr12 21517056 21517882 -122764607 - L1MC4 LINE L1 -2 8040 7190 386 281 111 28 chr12 21518095 21518340 -122764149 - Charlie8 DNA MER1_type -1010 1407 71 191 361 14 0 chr12 21518520 21518592 -122763897 - L2 LINE L2 -61 3211 3139 519 310 110 58 chr12 21518985 21519430 -122763059 - L2 LINE L2 -685 2629 2162 602 208 23 15 chr12 21520733 21520863 -122761626 + MER94 DNA DNA 1 131 -3 28 0 0 0 chr12 21521550 21521578 -122760911 + AT_rich Low_complexity Low_complexity 1 28 0 2427 73 0 0 chr12 21522366 21522666 -122759823 - AluY SINE Alu -11 300 1 229 222 185 0 chr12 21523127 21523208 -122759281 - MIR SINE MIR -115 147 52 392 210 81 66 chr12 21523656 21523767 -122758722 - FLAM_A SINE Alu -28 105 5 355 308 75 47 chr12 21525080 21525309 -122757180 - MIR SINE MIR -6 256 17 624 179 77 8 chr12 21525596 21525713 -122756776 - FLAM_A SINE Alu -8 125 1 344 252 29 0 chr12 21525723 21525826 -122756663 - HAL1 LINE L1 -144 2363 2258 300 267 22 67 chr12 21525916 21526051 -122756438 - HAL1b LINE L1 -471 877 749 342 0 0 0 chr12 21526149 21526187 -122756302 + (A)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr12 21526735 21526755 -122755734 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 470 199 54 5 chr12 21526755 21526941 -122755548 - AluY SINE Alu -31 280 86 451 270 72 65 chr12 21527386 21527844 -122754645 + L1MCa LINE L1 103 788 -5634 835 237 77 11 chr12 21528222 21528509 -122753980 + L1MCa LINE L1 1129 1434 -4989 6956 215 34 10 chr12 21529007 21531711 -122750778 + L1PA16 LINE L1 3404 6165 -1 9160 223 52 12 chr12 21531725 21534756 -122747733 + L1MA5A LINE L1 2627 5785 -512 694 71 36 0 chr12 21534756 21534868 -122747621 + (GAAA)n Simple_repeat Simple_repeat 1 116 0 5664 39 4 0 chr12 21534869 21535566 -122746923 - L1PA5 LINE L1 -1630 4516 3817 7287 37 8 1 chr12 21535566 21537185 -122745304 + L1PA5 LINE L1 4521 6145 -9 230 81 27 0 chr12 21537198 21537235 -122745254 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 1488 164 8 4 chr12 21537259 21537521 -122744968 + L1MA5A LINE L1 5797 6059 -238 7230 221 32 26 chr12 21537531 21538827 -122743662 + L1MA6 LINE L1 2116 3430 -2716 877 142 13 7 chr12 21538827 21538982 -122743507 + L1PB2 LINE L1 5990 6145 -6 7230 221 32 26 chr12 21538982 21539690 -122742799 + L1MA6 LINE L1 3430 4132 -2014 4812 173 43 27 chr12 21539688 21541305 -122741184 + L1MA6 LINE L1 4659 6285 -15 * 31 44 0 0 chr12 21541445 21541490 -122740999 + AT_rich Low_complexity Low_complexity 1 45 0 233 303 0 0 chr12 21541511 21541587 -122740902 + L1MC4 LINE L1 6621 6696 -1346 272 214 14 14 chr12 21541593 21541663 -122740826 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 183 338 95 0 chr12 21541764 21541838 -122740651 + MER5B DNA MER1_type 24 104 -74 231 36 0 0 chr12 21542358 21542386 -122740103 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 22 35 0 0 chr12 21542651 21542680 -122739809 + AT_rich Low_complexity Low_complexity 1 29 0 4625 206 56 6 chr12 21543585 21544673 -122737816 + L1MCa LINE L1 531 1673 -4753 39370 41 1 1 chr12 21544679 21549496 -122732993 + L1P LINE L1 2 4815 -1331 1043 182 11 0 chr12 21549496 21549678 -122732811 + L1MC1 LINE L1 6142 6330 -3 656 216 95 79 chr12 21549912 21549979 -122732510 - MLT1D LTR MaLR -82 423 359 2025 147 0 3 chr12 21549979 21550292 -122732197 - AluSx SINE Alu 0 312 1 656 216 95 79 chr12 21550292 21550465 -122732024 - MLT1D LTR MaLR -146 359 179 302 0 26 0 chr12 21550496 21550534 -122731955 + (CA)n Simple_repeat Simple_repeat 2 40 0 2335 81 0 0 chr12 21550768 21551063 -122731426 + AluY SINE Alu 1 295 -16 218 392 31 0 chr12 21551213 21551310 -122731179 + L3 LINE CR1 1422 1521 -56 306 300 62 24 chr12 21551372 21551582 -122730907 - L1MC4a LINE L1 -1870 5938 5721 2559 296 77 27 chr12 21551813 21552309 -122730180 - L1MC2 LINE L1 -22 6322 5769 1592 158 169 21 chr12 21552309 21552682 -122729807 + MSTA LTR MaLR 1 428 0 2559 296 77 27 chr12 21552682 21552989 -122729500 - L1MC2 LINE L1 -575 5769 5479 22 0 0 0 chr12 21553108 21553130 -122729359 + AT_rich Low_complexity Low_complexity 1 22 0 1730 134 21 3 chr12 21553146 21553436 -122729053 - L1PA15 LINE L1 -2 6163 5869 1761 153 0 0 chr12 21553436 21553718 -122728771 + L1P4 LINE L1 5395 5676 -489 2441 129 11 5 chr12 21553762 21554135 -122728354 + THE1C LTR MaLR 1 375 0 9269 129 40 37 chr12 21554135 21555711 -122726778 + THE1C-int LTR MaLR 1 1580 0 2658 111 0 5 chr12 21555711 21556088 -122726401 + THE1C LTR MaLR 1 375 0 372 370 60 5 chr12 21556430 21556630 -122725859 + MIR SINE MIR 52 262 0 21 36 0 0 chr12 21556684 21556712 -122725777 + AT_rich Low_complexity Low_complexity 1 28 0 992 176 5 5 chr12 21559023 21559210 -122723279 + L1PB1 LINE L1 7 193 -6670 * 13681 193 45 19 chr12 21559197 21561170 -122721319 + L1PB1 LINE L1 620 2541 -4326 279 0 0 0 chr12 21561170 21561201 -122721288 + (CA)n Simple_repeat Simple_repeat 2 32 0 13681 193 45 19 chr12 21561201 21565243 -122717246 + L1PB1 LINE L1 2541 6867 0 21 36 0 0 chr12 21566152 21566180 -122716309 + AT_rich Low_complexity Low_complexity 1 28 0 227 188 83 0 chr12 21566793 21566841 -122715648 - L2 LINE L2 -6 3266 3215 349 248 80 66 chr12 21566872 21567009 -122715480 + MIR SINE MIR 68 206 -56 239 325 9 9 chr12 21567670 21567784 -122714705 + (CA)n Simple_repeat Simple_repeat 2 115 0 2206 321 126 25 chr12 21567841 21568032 -122714457 + L2 LINE L2 107 277 -3037 2125 122 0 7 chr12 21568032 21568328 -122714161 - AluSx SINE Alu -18 294 1 2206 321 126 25 chr12 21568328 21569727 -122712762 + L2 LINE L2 277 1857 -1457 455 235 74 7 chr12 21569744 21569938 -122712551 + L1PB4 LINE L1 907 1114 -5090 1202 81 0 0 chr12 21569956 21570105 -122712384 + AluSc SINE Alu 149 297 -12 10278 220 42 41 chr12 21570184 21574646 -122707843 + L1PB4 LINE L1 1253 5718 -495 1875 166 0 6 chr12 21574646 21574772 -122707717 + AluSq SINE Alu 1 126 -187 642 104 0 0 chr12 21574772 21574868 -122707621 + (CATAA)n Simple_repeat Simple_repeat 2 97 0 1875 166 0 6 chr12 21574868 21575055 -122707434 + AluSq SINE Alu 126 312 -1 10278 220 42 41 chr12 21575055 21575549 -122706940 + L1PB4 LINE L1 5718 6210 -3 1803 330 112 44 chr12 21575603 21576958 -122705531 + L2 LINE L2 1883 3313 0 415 323 100 35 chr12 21577641 21578134 -122704355 + L2 LINE L2 2785 3312 -1 22 56 0 0 chr12 21579032 21579068 -122703421 + AT_rich Low_complexity Low_complexity 1 36 0 349 295 0 33 chr12 21581222 21581344 -122701145 + GA-rich Low_complexity Low_complexity 4 121 0 224 356 9 17 chr12 21581547 21581662 -122700827 + MIR3 SINE MIR 89 202 -6 22 0 0 0 chr12 21582044 21582066 -122700423 + AT_rich Low_complexity Low_complexity 1 22 0 1457 217 102 3 chr12 21582129 21582461 -122700028 + MLT1A1 LTR MaLR 1 365 0 352 205 71 31 chr12 21582592 21582719 -122699770 - Charlie1 DNA MER1_type -3 2758 2627 723 277 33 0 chr12 21582719 21582903 -122699586 - Charlie1 DNA MER1_type -2544 217 28 269 308 75 42 chr12 21583245 21583365 -122699124 + MIR3 SINE MIR 79 202 -6 192 405 40 7 chr12 21583826 21583974 -122698515 + L3b LINE CR1 1300 1452 -131 247 366 113 14 chr12 21584012 21584154 -122698335 + MIR SINE MIR 12 167 -95 387 184 0 0 chr12 21584605 21584611 -122697878 + (TA)n Simple_repeat Simple_repeat 2 7 -108 369 0 0 0 chr12 21584611 21584652 -122697837 + (CA)n Simple_repeat Simple_repeat 2 42 0 387 184 0 0 chr12 21584652 21584759 -122697730 + (TA)n Simple_repeat Simple_repeat 6 115 0 248 269 54 30 chr12 21586370 21586537 -122695952 - L1ME4a LINE L1 -115 6006 5836 1292 246 0 4 chr12 21586648 21587034 -122695455 + AluJb SINE Alu 5 389 0 42 36 0 0 chr12 21587060 21587116 -122695373 + AT_rich Low_complexity Low_complexity 1 56 0 521 315 122 13 chr12 21587889 21588127 -122694362 - L3 LINE CR1 -35 1542 1279 603 123 69 100 chr12 21588445 21588575 -122693914 + MER63 DNA MER1_type 1 752 -84 68 24 0 0 chr12 21589056 21589138 -122693351 + AT_rich Low_complexity Low_complexity 1 82 0 732 283 11 38 chr12 21590062 21590327 -122692162 + HsTC2b DNA Tc2 4 261 -654 6453 183 30 29 chr12 21590328 21593672 -122688817 + L1MA1 LINE L1 1699 7721 0 13467 184 25 27 chr12 21593688 21594550 -122687939 + L1MA2 LINE L1 2268 3130 -4593 1941 150 23 0 chr12 21594550 21594856 -122687633 - AluSq SINE Alu 0 313 1 13467 184 25 27 chr12 21594856 21596605 -122685884 + L1MA2 LINE L1 3130 4881 -2842 366 94 0 0 chr12 21596605 21596658 -122685831 + MADE1 DNA Mariner 1 53 -27 13467 184 25 27 chr12 21596658 21599302 -122683187 + L1MA2 LINE L1 4881 7723 0 23 0 0 0 chr12 21599302 21599325 -122683164 + AT_rich Low_complexity Low_complexity 1 23 0 8707 212 53 58 chr12 21599350 21600329 -122682160 + L1MB1 LINE L1 2908 3891 -3696 545 215 0 0 chr12 21600329 21600422 -122682067 + MER2 DNA MER2_type 1 93 -252 8707 212 53 58 chr12 21600422 21602205 -122680284 + L1MB1 LINE L1 3891 5682 -1905 390 42 0 0 chr12 21602205 21602253 -122680236 + (CA)n Simple_repeat Simple_repeat 1 48 0 8707 212 53 58 chr12 21602253 21604053 -122678436 + L1MB1 LINE L1 5682 7528 -59 13746 159 27 62 chr12 21604053 21605915 -122676574 - Tigger2 DNA MER2_type 0 2718 984 2982 105 11 0 chr12 21605915 21606353 -122676136 - L1PA10 LINE L1 -2 6166 5724 13746 159 27 62 chr12 21606353 21607304 -122675185 - Tigger2 DNA MER2_type -1734 984 2 317 167 0 0 chr12 21607305 21607365 -122675124 + L1MB1 LINE L1 7527 7586 -1 391 306 101 21 chr12 21610752 21611079 -122671410 - L1ME4a LINE L1 -246 5875 5523 22 0 0 0 chr12 21611130 21611152 -122671337 + AT_rich Low_complexity Low_complexity 1 22 0 531 292 125 19 chr12 21611342 21611558 -122670931 + MER8 DNA MER2_type 1 239 0 260 376 62 6 chr12 21612566 21612728 -122669761 - L2 LINE L2 -212 3060 2890 448 325 51 5 chr12 21613077 21613274 -122669215 + MLT1J LTR MaLR 6 211 -300 190 389 67 0 chr12 21614571 21614661 -122667828 - L2 LINE L2 -224 3048 2953 524 334 83 55 chr12 21614696 21615150 -122667339 + HAL1 LINE L1 830 1269 -1238 1929 122 3 47 chr12 21615150 21615469 -122667020 + AluSq SINE Alu 1 305 -8 1925 48 48 37 chr12 21615471 21615740 -122666749 + AluY SINE Alu 39 310 -1 524 334 83 55 chr12 21615740 21615869 -122666620 + HAL1 LINE L1 1269 1433 -1074 348 323 13 7 chr12 21615887 21616042 -122666447 + HAL1 LINE L1 1486 1641 -866 1043 225 81 63 chr12 21616087 21616421 -122666068 + MER2 DNA MER2_type 1 340 -5 1019 201 9 27 chr12 21617223 21617442 -122665047 - MER20 DNA MER1_type -1 218 4 2540 101 13 0 chr12 21617837 21618215 -122664274 - L1PB2 LINE L1 0 6151 5769 5958 90 16 0 chr12 21618235 21619068 -122663421 - L1PA8A LINE L1 -1 6130 5285 261 103 0 0 chr12 21619064 21619103 -122663386 + L1PA8A LINE L1 5224 5262 -884 * 1111 214 97 27 chr12 21619562 21619861 -122662628 + MLT1A1 LTR MaLR 16 335 -30 546 306 90 39 chr12 21619880 21620135 -122662354 + L2 LINE L2 2548 2815 -499 305 232 0 120 chr12 21620240 21620365 -122662124 + L1P LINE L1 3341 3450 -2696 2203 99 7 0 chr12 21620369 21620663 -122661826 - AluSg SINE Alu -14 296 1 1047 253 44 34 chr12 21620674 21621085 -122661404 + L1PA15 LINE L1 3220 3634 -2512 3314 205 12 3 chr12 21621095 21621762 -122660727 + L1PA15 LINE L1 5491 6163 -2 244 288 53 11 chr12 21621797 21621926 -122660563 + L1M4 LINE L1 349 546 -5757 2195 88 0 25 chr12 21622284 21622604 -122659885 - AluSx SINE Alu 0 312 1 1564 271 57 43 chr12 21622701 21623511 -122658978 + L1M4 LINE L1 804 1714 -4589 2482 45 10 19 chr12 21623511 21623824 -122658665 + AluY SINE Alu 2 311 0 1564 271 57 43 chr12 21623824 21623900 -122658589 + L1M4 LINE L1 1714 1787 -4516 810 215 33 9 chr12 21624018 21624232 -122658257 - L1M4c LINE L1 -5066 1318 1100 852 253 18 14 chr12 21624236 21624457 -122658032 - MLT1A1 LTR MaLR 0 365 144 24546 98 7 3 chr12 21624457 21628804 -122653685 - L1PA7 LINE L1 -4 6150 1784 210 162 0 0 chr12 21629177 21629214 -122653275 + T-rich Low_complexity Low_complexity 4 40 0 11748 229 28 33 chr12 21629798 21632346 -122650143 + L1PB3 LINE L1 3 2561 -4309 2094 119 14 0 chr12 21632346 21632639 -122649850 + AluSc SINE Alu 1 297 -12 11748 229 28 33 chr12 21632639 21634708 -122647781 + L1PB3 LINE L1 2561 4638 -2232 1583 197 0 25 chr12 21634708 21635028 -122647461 + AluSx SINE Alu 1 312 0 11748 229 28 33 chr12 21635028 21638175 -122644314 + L1PB3 LINE L1 4638 6863 -7 406 328 136 18 chr12 21639080 21639470 -122643019 + HAL1 LINE L1 1226 1661 -846 1002 216 70 63 chr12 21639743 21640030 -122642459 - MLT1A1 LTR MaLR 0 365 77 487 274 37 55 chr12 21640537 21640754 -122641735 + L1M4 LINE L1 2775 2986 -3396 1285 171 0 5 chr12 21640754 21640976 -122641513 + L1PA15 LINE L1 5944 6164 -1 487 274 37 55 chr12 21640976 21641086 -122641403 + L1M4 LINE L1 2986 3096 -3286 23 33 0 0 chr12 21641114 21641144 -122641345 + AT_rich Low_complexity Low_complexity 1 30 0 5766 204 100 75 chr12 21641187 21643160 -122639329 + L1MCa LINE L1 1 2023 -4403 1412 193 100 0 chr12 21643220 21643489 -122639000 - AluSx SINE Alu -8 304 9 933 170 57 5 chr12 21643502 21643696 -122638793 + L1MCa LINE L1 2120 2323 -4103 13045 169 48 35 chr12 21643814 21644298 -122638191 + MER4C-int LTR ERV1 3341 3817 -2781 216 97 0 0 chr12 21644298 21644329 -122638160 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 13045 169 48 35 chr12 21644329 21646894 -122635595 + MER4C-int LTR ERV1 3817 6429 -169 2597 127 69 5 chr12 21646941 21647373 -122635116 + MER4C LTR ERV1 5 464 -1 27 29 0 0 chr12 21648404 21648438 -122634051 + AT_rich Low_complexity Low_complexity 1 34 0 217 263 40 50 chr12 21648473 21648572 -122633917 - L2 LINE L2 -2 3270 3173 22 56 0 0 chr12 21649020 21649056 -122633433 + AT_rich Low_complexity Low_complexity 1 36 0 312 326 76 15 chr12 21649095 21649227 -122633262 - L1MC/D LINE L1 -1958 5850 5711 17042 142 29 35 chr12 21649230 21650054 -122632435 - L1PA10 LINE L1 -1 6883 6055 2089 84 27 43 chr12 21650054 21650353 -122632136 - AluY SINE Alu -17 294 1 17042 142 29 35 chr12 21650353 21653699 -122628790 - L1PA10 LINE L1 -829 6055 2730 26 64 0 0 chr12 21653800 21653847 -122628642 + AT_rich Low_complexity Low_complexity 1 47 0 29356 106 12 8 chr12 21653847 21659204 -122623285 - L1PA7 LINE L1 -6 6463 1042 14666 145 4 10 chr12 21659206 21661462 -122621027 + HUERS-P3 LTR ERV1 1956 4197 -4722 * 16409 156 8 8 chr12 21661435 21664036 -122618453 + HUERS-P3 LTR ERV1 4311 6912 -2007 1162 206 20 10 chr12 21664255 21664519 -122617970 + HUERS-P3 LTR ERV1 7156 8915 -4 1239 264 56 72 chr12 21664520 21665142 -122617347 + LTR9 LTR ERV1 1 612 0 2193 162 8 5 chr12 21665239 21665911 -122616578 - L1PA10 LINE L1 -5193 1670 850 1964 172 101 35 chr12 21666239 21666693 -122615796 + LTR2B LTR ERV1 7 490 0 36590 117 54 55 chr12 21666693 21673597 -122608892 + Harlequin LTR ERV1 1 6896 0 736 72 0 0 chr12 21673601 21673698 -122608791 - AluYb8 SINE Alu -187 131 35 3581 135 5 27 chr12 21673717 21674241 -122608248 + L1MA4 LINE L1 2884 3530 -4035 2335 92 0 20 chr12 21674241 21674547 -122607942 + AluSg SINE Alu 1 300 -10 3581 135 5 27 chr12 21674547 21674762 -122607727 + L1MA4 LINE L1 3530 3748 -3817 * 9828 195 39 15 chr12 21674740 21678357 -122604132 + L1MA4 LINE L1 4005 7713 -6 1846 146 75 22 chr12 21678920 21679242 -122603247 + MER1B DNA MER1_type 1 339 0 261 247 37 12 chr12 21679473 21679554 -122602935 - L2 LINE L2 -903 2411 2329 228 304 104 9 chr12 21679569 21679684 -122602805 - L2 LINE L2 -2621 693 568 305 264 161 42 chr12 21679904 21680097 -122602392 + MLT1L LTR MaLR 221 436 -179 1714 63 0 0 chr12 21680150 21680451 -122602038 + L1PA5 LINE L1 5934 6234 0 512 211 0 0 chr12 21680506 21680601 -122601888 - FRAM SINE Alu -17 159 65 481 264 90 57 chr12 21680882 21681349 -122601140 + L1MCa LINE L1 19 795 -5627 621 271 81 7 chr12 21681713 21682008 -122600481 + L1MCa LINE L1 1120 1436 -4987 7349 214 19 18 chr12 21682499 21685266 -122597223 + L1PA16 LINE L1 3403 6165 -1 * 9676 210 32 27 chr12 21685253 21690015 -122592474 + L1MA5A LINE L1 3462 6766 -950 818 130 25 56 chr12 21690015 21690177 -122592312 + L1PB2 LINE L1 5993 6149 -2 9676 210 32 27 chr12 21690177 21690885 -122591604 + L1MA5A LINE L1 6766 7469 -247 5311 171 27 18 chr12 21690876 21692497 -122589992 + L1MA6 LINE L1 4654 6285 -15 * 261 83 0 0 chr12 21692652 21692688 -122589801 + (CA)n Simple_repeat Simple_repeat 2 37 0 27 29 0 0 chr12 21692876 21692910 -122589579 + AT_rich Low_complexity Low_complexity 1 34 0 3871 205 55 31 chr12 21692997 21693993 -122588496 + LTR28 LTR ERV1 1 1020 0 29 0 0 0 chr12 21694368 21694397 -122588092 + AT_rich Low_complexity Low_complexity 1 29 0 8609 226 71 19 chr12 21695319 21697026 -122585463 + L1MCa LINE L1 574 2191 -4235 1501 178 10 50 chr12 21697026 21697324 -122585165 + AluJb SINE Alu 1 286 -26 8609 226 71 19 chr12 21697324 21697680 -122584809 + L1MCa LINE L1 2191 2527 -3899 516 200 118 41 chr12 21697680 21697875 -122584614 - MER6B DNA MER2_type 0 210 1 8609 226 71 19 chr12 21697875 21698113 -122584376 + L1MCa LINE L1 2527 2751 -3675 1209 155 12 139 chr12 21698113 21698268 -122584221 + AluY SINE Alu 1 88 -253 2188 118 0 7 chr12 21698268 21698574 -122583915 + AluSc SINE Alu 1 304 -5 1209 155 12 139 chr12 21698574 21698800 -122583689 + AluY SINE Alu 88 341 0 8609 226 71 19 chr12 21698800 21701130 -122581359 + L1MCa LINE L1 2751 5448 -978 356 222 9 28 chr12 21701147 21701255 -122581234 + L1MC1 LINE L1 4081 4186 -2240 507 210 0 0 chr12 21701255 21701355 -122581134 + FRAM SINE Alu 41 140 -36 180 0 0 0 chr12 21701360 21701380 -122581109 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5239 191 25 36 chr12 21701380 21701619 -122580870 + L1MC1 LINE L1 5441 5681 -932 2403 74 0 26 chr12 21701619 21701930 -122580559 + AluY SINE Alu 3 305 -6 5239 191 25 36 chr12 21701930 21702884 -122579605 + L1MC1 LINE L1 5681 6612 -1 25 31 0 0 chr12 21702936 21702968 -122579521 + AT_rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chr12 21703191 21703228 -122579261 + AT_rich Low_complexity Low_complexity 1 37 0 1983 121 7 7 chr12 21703281 21703578 -122578911 + AluSx SINE Alu 1 297 -15 450 133 41 10 chr12 21703578 21703676 -122578813 + GA-rich Low_complexity Low_complexity 2 102 0 182 362 135 0 chr12 21703677 21703862 -122578627 + L3 LINE CR1 1312 1521 -56 275 279 13 97 chr12 21703935 21704161 -122578328 - L1MC4a LINE L1 -1881 5927 5721 253 200 0 0 chr12 21704170 21704215 -122578274 - L1MC4a LINE L1 -2151 5657 5613 2030 206 71 14 chr12 21704444 21704926 -122577563 - L1MC3 LINE L1 -14 7771 5810 1008 198 198 4 chr12 21704928 21705171 -122577318 + MSTA LTR MaLR 1 290 -138 8621 147 11 72 chr12 21705186 21706098 -122576391 + MSTA-int LTR MaLR 5 971 -609 315 167 0 0 chr12 21706098 21706152 -122576337 + AluSq/x SINE Alu 83 136 -166 835 229 0 0 chr12 21706152 21706318 -122576171 + AluJo/FRAM SINE Alu 137 302 0 8621 147 11 72 chr12 21706318 21706837 -122575652 + MSTA-int LTR MaLR 970 1379 -201 2284 95 0 3 chr12 21706837 21707132 -122575357 - AluY SINE Alu -17 294 1 8621 147 11 72 chr12 21707132 21707323 -122575166 + MSTA-int LTR MaLR 1379 1580 0 1697 168 160 19 chr12 21707324 21707698 -122574791 + MSTA LTR MaLR 2 428 0 1119 226 104 0 chr12 21707706 21707993 -122574496 - L1MC3 LINE L1 -540 5804 5488 1845 156 3 20 chr12 21708001 21708303 -122574186 - AluSx SINE Alu -15 297 1 1165 136 11 5 chr12 21708477 21708661 -122573828 - L1PA15 LINE L1 -112 6053 5869 1801 138 0 0 chr12 21708661 21708943 -122573546 + L1P4 LINE L1 5395 5676 -489 371 355 54 22 chr12 21709297 21709531 -122572958 + MIR SINE MIR 20 262 0 24 32 0 0 chr12 21712830 21712861 -122569628 + AT_rich Low_complexity Low_complexity 1 31 0 196 229 83 0 chr12 21713477 21713525 -122568964 - L2 LINE L2 -6 3266 3215 321 231 90 0 chr12 21713591 21713669 -122568820 + MIR SINE MIR 100 184 -78 2114 148 19 19 chr12 21713961 21714325 -122568164 + THE1B LTR MaLR 1 364 0 11488 98 4 6 chr12 21714325 21715908 -122566581 + THE1B-int LTR MaLR 1 1580 0 1955 138 33 25 chr12 21715908 21716269 -122566220 + THE1B LTR MaLR 1 364 0 2094 333 127 25 chr12 21717236 21718832 -122563657 + L2 LINE L2 107 1865 -1449 11366 222 32 30 chr12 21718840 21720871 -122561618 + L1PB4 LINE L1 907 2932 -3281 2070 142 0 3 chr12 21720871 21721174 -122561315 + AluSx SINE Alu 1 302 -10 11366 222 32 30 chr12 21721174 21724371 -122558118 + L1PB4 LINE L1 2932 6213 0 1724 336 101 31 chr12 21724372 21725772 -122556717 + L2 LINE L2 1833 3313 0 240 269 141 32 chr12 21726300 21726456 -122556033 - L3 LINE CR1 -594 983 811 338 292 64 0 chr12 21726471 21726652 -122555837 + L2 LINE L2 2781 2971 -301 205 241 35 17 chr12 21726987 21727045 -122555444 - L3 LINE CR1 -1079 498 440 26 50 0 0 chr12 21727871 21727911 -122554578 + AT_rich Low_complexity Low_complexity 1 40 0 2066 124 0 7 chr12 21728386 21728684 -122553805 + AluSg SINE Alu 1 296 -14 331 212 53 18 chr12 21730261 21730374 -122552115 + GA-rich Low_complexity Low_complexity 4 120 0 246 306 83 9 chr12 21730574 21730682 -122551807 + MIR3 SINE MIR 89 204 -4 32 67 0 0 chr12 21730868 21730928 -122551561 + AT_rich Low_complexity Low_complexity 1 60 0 193 179 71 36 chr12 21731162 21731218 -122551271 + MIR SINE MIR 110 167 -95 813 89 0 8 chr12 21731768 21731891 -122550598 + AluY SINE Alu 188 309 -2 29 47 0 0 chr12 21733326 21733369 -122549120 + AT_rich Low_complexity Low_complexity 1 43 0 448 312 126 34 chr12 21733489 21733752 -122548737 - L3 LINE CR1 -13 1564 1278 2180 102 3 3 chr12 21733959 21734252 -122548237 + AluSx SINE Alu 1 293 -19 586 154 54 85 chr12 21734358 21734488 -122548001 + MER63 DNA MER1_type 1 752 -84 48 43 0 0 chr12 21734974 21735043 -122547446 + AT_rich Low_complexity Low_complexity 1 69 0 1220 257 112 55 chr12 21735975 21736575 -122545914 + HsTC2a DNA Tc2 11 644 -100 621 335 48 9 chr12 21736581 21736811 -122545678 + L1M3d LINE L1 5 243 -5648 4143 94 19 0 chr12 21736905 21737482 -122545007 + L1PA10 LINE L1 5577 6164 -4 679 298 7 32 chr12 21737494 21737723 -122544766 + L1M3d LINE L1 252 688 -5203 183 42 0 0 chr12 21737723 21737747 -122544742 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 834 304 82 56 chr12 21737750 21738279 -122544210 + L1M3d LINE L1 247 808 -5083 7802 171 48 42 chr12 21738298 21739832 -122542657 + L1MB1 LINE L1 747 2290 -5275 2211 187 14 0 chr12 21739823 21740241 -122542248 + L1MB1 LINE L1 4985 5408 -2157 * 4505 204 16 11 chr12 21740263 21741511 -122540978 + L1MB1 LINE L1 6064 7325 -262 7540 73 15 6 chr12 21741511 21742509 -122539980 + LTR13 LTR ERVK 1 1007 0 4505 204 16 11 chr12 21742509 21742715 -122539774 + L1MB1 LINE L1 7325 7528 -59 513 234 0 0 chr12 21742715 21742809 -122539680 - Tigger2 DNA MER2_type 0 2718 2625 487 148 0 0 chr12 21742832 21742913 -122539576 - L1 LINE L1 -2157 3989 3909 13615 160 33 40 chr12 21742919 21745548 -122536941 - Tigger2 DNA MER2_type -108 2610 1 323 312 0 32 chr12 21746013 21746138 -122536351 + Charlie8 DNA MER1_type 93 213 -2204 370 306 113 19 chr12 21748777 21749317 -122533172 - L1ME4a LINE L1 0 6121 5531 395 211 0 0 chr12 21749726 21749797 -122532692 + MER8 DNA MER2_type 169 239 0 333 0 0 0 chr12 21750453 21750490 -122531999 + (CA)n Simple_repeat Simple_repeat 2 38 0 2558 39 3 0 chr12 21750835 21751140 -122531349 + AluY SINE Alu 1 306 -5 503 302 47 51 chr12 21751673 21751928 -122530561 + MLT1J LTR MaLR 9 262 -249 260 167 0 0 chr12 21752027 21752075 -122530414 + MLT1J LTR MaLR 429 476 -35 195 271 21 0 chr12 21752109 21752157 -122530332 - L2 LINE L2 -1417 1897 1849 22 56 0 0 chr12 21752284 21752320 -122530169 + AT_rich Low_complexity Low_complexity 1 36 0 685 318 73 61 chr12 21753302 21753880 -122528609 + HAL1 LINE L1 831 1415 -1092 429 305 38 9 chr12 21753885 21754098 -122528391 + HAL1 LINE L1 1451 1669 -838 988 183 5 67 chr12 21754131 21754232 -122528257 + MER2 DNA MER2_type 1 82 -263 1712 172 10 3 chr12 21754232 21754535 -122527954 + AluSx SINE Alu 3 307 -5 988 183 5 67 chr12 21754535 21754657 -122527832 + MER2 DNA MER2_type 82 210 -135 56 61 0 0 chr12 21755258 21755356 -122527133 + AT_rich Low_complexity Low_complexity 1 98 0 867 225 14 27 chr12 21755623 21755845 -122526644 - MER20 DNA MER1_type 0 219 1 6613 215 82 87 chr12 21756533 21758614 -122523875 + L1M3 LINE L1 2286 4628 -1543 1248 219 14 28 chr12 21758614 21758897 -122523592 - AluJo SINE Alu -33 279 1 6613 215 82 87 chr12 21758897 21760048 -122522441 + L1M3 LINE L1 4628 5783 -388 1536 113 0 0 chr12 21760047 21760260 -122522229 + L1PA15 LINE L1 5418 5630 -535 * 1671 147 3 93 chr12 21760264 21760508 -122521981 + L1PA15 LINE L1 5837 6042 -123 2117 87 0 11 chr12 21760508 21760833 -122521656 + AluY SINE Alu 1 322 0 1671 147 3 93 chr12 21760833 21760940 -122521549 + L1PA15 LINE L1 6042 6157 -8 2479 264 60 25 chr12 21760946 21761344 -122521145 - L1M4 LINE L1 -1433 4713 4330 306 0 0 0 chr12 21761344 21761378 -122521111 + (TG)n Simple_repeat Simple_repeat 1 34 0 2479 264 60 25 chr12 21761378 21761931 -122520558 - L1M4 LINE L1 -1816 4330 3729 * 4651 199 42 11 chr12 21761928 21763003 -122519486 - L1MC2 LINE L1 0 6842 5735 1672 235 15 30 chr12 21763009 21763477 -122519012 - L1MC2 LINE L1 -4824 1822 1362 1030 251 55 26 chr12 21763488 21763831 -122518658 - MLT1A1 LTR MaLR -11 354 2 22 56 0 0 chr12 21763838 21763874 -122518615 + AT_rich Low_complexity Low_complexity 1 36 0 470 254 0 17 chr12 21763892 21764010 -122518479 - L1MC2 LINE L1 -5825 717 602 22 0 0 0 chr12 21764297 21764319 -122518170 + AT_rich Low_complexity Low_complexity 1 22 0 510 256 108 26 chr12 21764654 21764959 -122517530 + L1ME LINE L1 500 829 -5241 383 145 40 13 chr12 21765013 21765089 -122517400 - L1ME LINE L1 -3774 2306 2229 1624 192 33 3 chr12 21765107 21765466 -122517023 + L1ME LINE L1 2310 2679 -3401 2260 113 7 0 chr12 21766042 21766342 -122516147 - AluSx SINE Alu -10 302 1 601 141 8 16 chr12 21766356 21766477 -122516012 + L1ME LINE L1 2700 2819 -3261 1812 162 3 7 chr12 21766508 21766805 -122515684 - AluSx SINE Alu -16 296 1 343 279 26 7 chr12 21766830 21766984 -122515505 + (TA)n Simple_repeat Simple_repeat 1 157 0 425 349 130 37 chr12 21767013 21767295 -122515194 + HAL1 LINE L1 1219 1562 -945 2251 90 3 3 chr12 21767295 21767583 -122514906 - AluY SINE Alu -16 295 8 425 349 130 37 chr12 21767583 21767762 -122514727 + HAL1 LINE L1 1562 1723 -784 1049 197 128 66 chr12 21767974 21768248 -122514241 - MLT1A1 LTR MaLR 0 365 75 259 269 10 39 chr12 21768754 21768858 -122513631 + L1M4 LINE L1 2539 2639 -3507 2112 117 0 36 chr12 21768896 21769205 -122513284 + AluSg SINE Alu 1 298 -12 1390 127 5 9 chr12 21769301 21769522 -122512967 + L1PA15 LINE L1 5944 6163 -2 8619 233 65 53 chr12 21769736 21770433 -122512056 + L1MCa LINE L1 1 688 -5738 1825 117 4 11 chr12 21770433 21770699 -122511790 + AluSg1 SINE Alu 35 298 -11 8619 233 65 53 chr12 21770699 21772290 -122510199 + L1MCa LINE L1 688 2258 -4168 1692 192 45 3 chr12 21772290 21772624 -122509865 + MER7A DNA MER2_type 1 346 0 8619 233 65 53 chr12 21772624 21772886 -122509603 + L1MCa LINE L1 2258 2515 -3911 530 43 0 0 chr12 21772886 21772956 -122509533 + L1PA4 LINE L1 6083 6152 -3 8619 233 65 53 chr12 21772956 21774149 -122508340 + L1MCa LINE L1 2515 3802 -2624 2272 103 0 0 chr12 21774149 21774460 -122508029 + AluY SINE Alu 1 311 0 8619 233 65 53 chr12 21774460 21774814 -122507675 + L1MCa LINE L1 3802 4150 -2276 2169 163 11 3 chr12 21774843 21775204 -122507285 + THE1B LTR MaLR 1 364 0 7035 131 40 47 chr12 21775204 21776431 -122506058 + THE1B-int LTR MaLR 1 1218 -362 189 293 129 48 chr12 21776438 21776585 -122505904 - L2 LINE L2 -30 3283 3125 27 29 0 0 chr12 21776594 21776628 -122505861 + AT_rich Low_complexity Low_complexity 1 34 0 227 187 16 47 chr12 21776680 21776945 -122505544 + (TA)n Simple_repeat Simple_repeat 1 256 0 535 188 14 30 chr12 21776984 21777229 -122505260 + (TA)n Simple_repeat Simple_repeat 1 240 0 247 257 20 40 chr12 21777233 21777385 -122505104 + (CATATA)n Simple_repeat Simple_repeat 2 150 0 * 493 189 22 42 chr12 21777321 21777684 -122504805 + (TA)n Simple_repeat Simple_repeat 1 356 0 1116 254 103 35 chr12 21777736 21778165 -122504324 + MLT1D LTR MaLR 6 463 -42 800 273 131 4 chr12 21778216 21778491 -122503998 - L2 LINE L2 -165 3148 2839 769 335 21 10 chr12 21778995 21779255 -122503234 + MIR SINE MIR 2 262 0 23 54 0 0 chr12 21779436 21779473 -122503016 + AT_rich Low_complexity Low_complexity 1 37 0 2277 103 0 0 chr12 21779711 21780013 -122502476 - AluSg SINE Alu -8 302 1 2324 129 85 14 chr12 21780408 21780842 -122501647 + MER4C LTR ERV1 1 465 0 5766 154 127 61 chr12 21780853 21780953 -122501536 + MER4C-int LTR ERV1 1 93 -6505 4240 74 4 0 chr12 21780953 21781505 -122500984 + MER41A LTR ERV1 1 554 0 5766 154 127 61 chr12 21781505 21782412 -122500077 + MER4C-int LTR ERV1 93 938 -5660 342 45 0 0 chr12 21782412 21782456 -122500033 + (TG)n Simple_repeat Simple_repeat 1 44 0 5766 154 127 61 chr12 21782456 21783228 -122499261 + MER4C-int LTR ERV1 938 1657 -4941 2064 130 7 0 chr12 21783228 21783520 -122498969 + AluSg SINE Alu 7 300 -10 5766 154 127 61 chr12 21783520 21784132 -122498357 + MER4C-int LTR ERV1 1657 2485 -4113 14419 168 48 46 chr12 21784133 21785262 -122497227 + MER4C-int LTR ERV1 2846 3971 -2627 2105 147 0 10 chr12 21785262 21785576 -122496913 - AluSx SINE Alu -1 311 1 14419 168 48 46 chr12 21785576 21788189 -122494300 + MER4C-int LTR ERV1 3971 6595 -3 1725 100 30 7 chr12 21788195 21788464 -122494025 + MER4C LTR ERV1 1 275 -190 2564 100 60 21 chr12 21788472 21788903 -122493586 + LTR7 LTR ERV1 1 448 -2 14673 93 22 15 chr12 21788905 21791746 -122490743 + HERVH LTR ERV1 1 2985 -4728 807 144 20 0 chr12 21791742 21791888 -122490601 + HERVH LTR ERV1 3140 3288 -4425 * 3269 101 4 6 chr12 21791880 21792383 -122490106 + HERVH LTR ERV1 3492 3993 -3720 2629 143 8 11 chr12 21792385 21793003 -122489486 + HERVH LTR ERV1 4488 5149 -2564 1127 96 0 6 chr12 21793004 21793182 -122489307 + HERVH LTR ERV1 5600 5776 -1937 2269 79 3 10 chr12 21793201 21793493 -122488996 + AluY SINE Alu 1 290 -21 6377 136 26 7 chr12 21793494 21795024 -122487465 + L1MA1 LINE L1 4739 6302 0 239 292 23 88 chr12 21795503 21795674 -122486815 - L2 LINE L2 -2 3311 3152 29 28 0 0 chr12 21795702 21795738 -122486751 + AT_rich Low_complexity Low_complexity 1 36 0 228 67 0 0 chr12 21796094 21796124 -122486365 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 2343 65 0 23 chr12 21796174 21796481 -122486008 - AluY SINE Alu -11 300 1 241 297 191 3 chr12 21796510 21796793 -122485696 - L1MC4a LINE L1 -1866 5942 5607 331 275 22 22 chr12 21796925 21797103 -122485386 + (TA)n Simple_repeat Simple_repeat 2 179 0 2317 250 52 17 chr12 21797178 21797809 -122484680 + MER82 DNA MER2_type 1 653 0 2344 100 3 0 chr12 21798883 21799184 -122483305 + AluSp SINE Alu 1 302 -11 21 0 0 0 chr12 21801097 21801118 -122481371 + AT_rich Low_complexity Low_complexity 1 21 0 252 235 0 0 chr12 21801134 21801202 -122481287 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 2574 43 0 3 chr12 21801321 21801620 -122480869 - AluY SINE Alu -13 298 1 216 274 126 52 chr12 21801783 21801918 -122480571 - MER5B DNA MER1_type -30 148 4 214 250 44 44 chr12 21802879 21802947 -122479542 + L2 LINE L2 82 149 -3165 1218 81 0 0 chr12 21802952 21803101 -122479388 + AluY SINE Alu 1 149 -162 4190 125 170 86 chr12 21803103 21804523 -122477966 + pTR5 LTR ERV1 745 2428 -10 1237 89 12 6 chr12 21804523 21804691 -122477798 + AluSg/x SINE Alu 132 300 -12 3660 301 198 25 chr12 21804697 21806960 -122475529 + L2 LINE L2 156 2809 -505 605 301 62 67 chr12 21806976 21807365 -122475124 + L2 LINE L2 2927 3313 0 739 328 102 14 chr12 21807598 21808136 -122474353 + L2 LINE L2 2730 3313 0 245 317 0 24 chr12 21808228 21808310 -122474179 + Charlie2 DNA MER1_type 3 82 -2700 345 240 0 0 chr12 21808320 21808416 -122474073 - L1MA10 LINE L1 -8 6326 6231 308 299 77 5 chr12 21808436 21808657 -122473832 - L1ME2 LINE L1 -128 6036 5800 2273 100 7 0 chr12 21808657 21808958 -122473531 - AluY SINE Alu -8 303 1 835 244 174 36 chr12 21808961 21809511 -122472978 - L1ME2 LINE L1 -816 5330 4705 547 229 57 61 chr12 21809543 21809788 -122472701 - L1ME2 LINE L1 -1939 4207 3964 397 196 72 39 chr12 21809837 21809990 -122472499 + L1M4 LINE L1 3830 3987 -2159 * 930 220 73 0 chr12 21809989 21810248 -122472241 + L1MA4 LINE L1 5986 6263 -37 233 162 29 44 chr12 21810253 21810321 -122472168 + L1M4 LINE L1 3975 4041 -2105 823 214 30 10 chr12 21810610 21810811 -122471678 + MER3 DNA MER1_type 1 205 -4 516 316 128 20 chr12 21811123 21811420 -122471069 - L1ME LINE L1 -389 5732 5404 225 369 97 0 chr12 21812792 21812895 -122469594 + L2 LINE L2 3155 3267 -5 1959 146 3 13 chr12 21812974 21813276 -122469213 + AluSx SINE Alu 2 300 -12 1529 210 22 92 chr12 21813322 21813865 -122468624 + MLT1D LTR MaLR 1 505 0 228 277 15 0 chr12 21814169 21814234 -122468255 + LTR16B LTR ERVL 3 68 -396 591 261 62 23 chr12 21814585 21814732 -122467757 + MIR SINE MIR 14 154 -108 2432 86 0 0 chr12 21814732 21815036 -122467453 + AluY SINE Alu 1 304 -7 216 0 0 0 chr12 21815036 21815060 -122467429 + (TA)n Simple_repeat Simple_repeat 2 25 0 591 261 62 23 chr12 21815060 21815087 -122467402 + MIR SINE MIR 153 196 -66 1107 223 20 13 chr12 21815093 21815393 -122467096 + L1MB7 LINE L1 5858 6165 -1 938 235 48 101 chr12 21815484 21815879 -122466610 + MLT1B LTR MaLR 1 374 -16 1333 178 68 34 chr12 21815898 21816222 -122466267 + MLT1B-int LTR MaLR 4 342 -1029 2109 109 13 7 chr12 21816222 21816524 -122465965 - AluY SINE Alu -7 304 1 1333 178 68 34 chr12 21816524 21816553 -122465936 + MLT1B-int LTR MaLR 342 369 -1002 292 197 15 0 chr12 21816667 21816733 -122465756 + MLT1B-int LTR MaLR 680 746 -989 1005 219 23 0 chr12 21816883 21817098 -122465391 + MLT1B-int LTR MaLR 1321 1540 -195 2859 111 21 74 chr12 21817169 21817356 -122465133 - MER4B LTR ERV1 0 779 584 2252 110 3 0 chr12 21817356 21817656 -122464833 + AluY SINE Alu 1 301 -10 2859 111 21 74 chr12 21817656 21818113 -122464376 - MER4B LTR ERV1 -195 584 1 226 259 0 19 chr12 21818114 21818168 -122464321 - L2 LINE L2 -1051 2263 2211 187 295 9 29 chr12 21818256 21818361 -122464128 - L2 LINE L2 -1230 2084 1982 2417 75 10 0 chr12 21818364 21818672 -122463817 + AluY SINE Alu 1 311 0 17710 180 52 5 chr12 21819607 21823640 -122458849 + L1MA2 LINE L1 17 4239 -3326 1305 127 17 38 chr12 21823679 21823915 -122458574 - THE1B LTR MaLR -2 362 132 6630 113 22 9 chr12 21823915 21824934 -122457555 - THE1B-int LTR MaLR -548 1032 1 1913 169 25 33 chr12 21824934 21825301 -122457188 - THE1B LTR MaLR 0 364 1 5799 153 21 6 chr12 21825301 21826719 -122455770 + L1MA2 LINE L1 6286 7723 0 24536 105 29 32 chr12 21826727 21831610 -122450879 + Harlequin LTR ERV1 17 3395 0 3659 148 2 5 chr12 21831612 21832193 -122450296 + Harlequin LTR ERV1 4396 4974 -3425 526 226 75 0 chr12 21832162 21832441 -122450048 + Harlequin LTR ERV1 842 1141 -5755 * 2053 28 4 4 chr12 21832642 21832891 -122449598 + L1PA3 LINE L1 5901 6149 -6 21 0 0 0 chr12 21832892 21832913 -122449576 + AT_rich Low_complexity Low_complexity 1 21 0 2997 249 23 49 chr12 21832954 21833056 -122449433 + L1ME3 LINE L1 2308 2411 -4015 1764 176 42 6 chr12 21833056 21833392 -122449097 + MER7A DNA MER2_type 1 346 0 2997 249 23 49 chr12 21833392 21834426 -122448063 + L1ME3 LINE L1 2411 3406 -3020 2146 92 0 0 chr12 21834426 21834697 -122447792 + AluY SINE Alu 3 273 -38 2997 249 23 49 chr12 21834697 21834923 -122447566 + L1ME3 LINE L1 3406 3636 -2790 * 3235 137 59 21 chr12 21834896 21835568 -122446921 + L1PB1 LINE L1 2354 3052 -3810 375 94 0 0 chr12 21835568 21835621 -122446868 - AluY SINE Alu 0 300 248 1407 67 72 0 chr12 21835621 21835801 -122446688 - AluY SINE Alu -118 193 1 12059 205 33 5 chr12 21835801 21839048 -122443441 + L1PB1 LINE L1 3041 6376 -491 2555 158 23 5 chr12 21839056 21839499 -122442990 + L1PB1 LINE L1 6417 6867 0 339 25 0 0 chr12 21839541 21839581 -122442908 + (CA)n Simple_repeat Simple_repeat 1 40 0 23 86 0 0 chr12 21839785 21839843 -122442646 + AT_rich Low_complexity Low_complexity 1 58 0 2127 127 7 0 chr12 21839941 21840240 -122442249 - AluSg SINE Alu -6 304 4 34203 102 14 11 chr12 21840320 21845384 -122437105 + L1PA6 LINE L1 11 5090 -1056 1047 59 0 0 chr12 21845389 21845524 -122436965 - L1PA6 LINE L1 -7 6147 6013 6511 61 40 1 chr12 21845544 21846578 -122435911 + L1PA6 LINE L1 5084 6151 -3 441 287 32 44 chr12 21846585 21846607 -122435882 + L1ME3 LINE L1 5076 5097 -1765 2189 109 3 3 chr12 21846607 21846909 -122435580 + AluSc SINE Alu 1 302 -7 441 287 32 44 chr12 21846909 21847012 -122435477 + L1ME3 LINE L1 5097 5200 -1662 2417 71 0 0 chr12 21847012 21847309 -122435180 - AluY SINE Alu -14 297 1 441 287 32 44 chr12 21847309 21847473 -122435016 + L1ME3 LINE L1 5200 5363 -1499 307 299 39 91 chr12 21847614 21847845 -122434644 + L1ME3 LINE L1 5511 5729 -1133 611 289 53 24 chr12 21848077 21848463 -122434026 + L1ME3 LINE L1 5985 6383 -503 1026 199 166 14 chr12 21848577 21848854 -122433635 - MSTA LTR MaLR -109 319 1 8134 168 15 48 chr12 21848854 21850487 -122432002 - MSTA-int LTR MaLR 0 1580 3 1752 135 170 22 chr12 21850489 21850860 -122431629 - MSTA LTR MaLR 0 428 3 401 326 53 26 chr12 21850862 21851052 -122431437 + L1ME3 LINE L1 6391 6585 -293 213 324 38 19 chr12 21851749 21851854 -122430635 - L2 LINE L2 -66 3247 3141 420 157 47 6 chr12 21851856 21852028 -122430461 + (TA)n Simple_repeat Simple_repeat 2 180 0 1959 183 45 33 chr12 21852028 21852555 -122429934 - MLT2A2 LTR ERVL -8 546 5 237 101 51 25 chr12 21852555 21852634 -122429855 + (TA)n Simple_repeat Simple_repeat 1 81 0 1399 222 91 63 chr12 21852655 21853083 -122429406 + MLT1D LTR MaLR 6 445 -60 4121 168 47 60 chr12 21853083 21854746 -122427743 + MER4-int LTR ERV1 1357 2397 -4201 207 0 0 0 chr12 21854746 21854769 -122427720 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 4121 168 47 60 chr12 21854769 21854857 -122427632 + MER4-int LTR ERV1 2397 2485 -4113 225 214 29 43 chr12 21856088 21856158 -122426331 + CT-rich Low_complexity Low_complexity 2 70 0 2161 164 92 2 chr12 21856453 21856855 -122425634 - Tigger2 DNA MER2_type -1 2717 2280 422 134 15 0 chr12 21856853 21856920 -122425569 - Tigger2 DNA MER2_type -2649 69 2 * 279 93 0 0 chr12 21856922 21856965 -122425524 + (CA)n Simple_repeat Simple_repeat 2 44 0 245 188 0 42 chr12 21856983 21857031 -122425458 - MLT2D LTR ERVL -125 395 350 751 161 7 0 chr12 21857093 21857230 -122425259 - MLT2D LTR ERVL -263 151 14 484 315 42 15 chr12 21857471 21857731 -122424758 - L1M4 LINE L1 -1368 4778 4512 442 266 37 21 chr12 21858000 21858188 -122424301 - L1M4 LINE L1 -1944 4202 4012 308 197 34 26 chr12 21858231 21858348 -122424141 + MER69 DNA AcHobo 2379 2496 -30 519 206 0 19 chr12 21858349 21858456 -122424033 + FRAM SINE Alu 65 169 -7 331 294 137 41 chr12 21858549 21858746 -122423743 - MLT1L LTR MaLR -179 436 221 627 262 0 0 chr12 21859220 21859409 -122423080 - AluJ SINE Alu 0 345 157 * 663 143 0 84 chr12 21859408 21859527 -122422962 - AluJ SINE Alu -203 109 1 21 0 0 0 chr12 21859533 21859554 -122422935 + AT_rich Low_complexity Low_complexity 1 21 0 473 299 279 30 chr12 21860441 21860979 -122421510 + L2 LINE L2 44 715 -2599 10454 189 26 42 chr12 21861042 21864797 -122417692 - L1MA3 LINE L1 -5 7719 4032 13759 154 43 31 chr12 21864822 21867428 -122415061 - L1MA3 LINE L1 -3824 3741 1104 409 222 65 9 chr12 21867436 21867544 -122414945 - L1MA3 LINE L1 -7436 129 16 1404 164 17 0 chr12 21868421 21868652 -122413837 - L1P3 LINE L1 -6217 244 10 316 259 86 80 chr12 21868864 21869026 -122413463 - MLT1L LTR MaLR -299 168 6 2256 92 3 3 chr12 21869371 21869666 -122412823 - AluSg SINE Alu -15 295 1 336 274 102 32 chr12 21869894 21870051 -122412438 - L1ME LINE L1 -403 5718 5551 6711 165 49 15 chr12 21870738 21872436 -122410053 + L1PBa LINE L1 1690 3478 -3384 7474 25 8 0 chr12 21872436 21873451 -122409038 + L1PA3 LINE L1 5135 6159 0 6711 165 49 15 chr12 21873451 21873928 -122408561 + L1PBa LINE L1 3478 3937 -2925 63 84 0 0 chr12 21874162 21874316 -122408173 + AT_rich Low_complexity Low_complexity 1 154 0 342 298 199 35 chr12 21874345 21874627 -122407862 - L2 LINE L2 -37 3276 2949 659 319 77 50 chr12 21874835 21875211 -122407278 - L2 LINE L2 -1 3312 2927 4229 286 144 45 chr12 21875213 21877720 -122404769 - L2 LINE L2 -491 2823 70 384 319 165 28 chr12 21878052 21878234 -122404255 - MIR SINE MIR -31 231 25 199 356 42 17 chr12 21878730 21878848 -122403641 + MER5A DNA MER1_type 41 161 -28 237 204 0 0 chr12 21879155 21879204 -122403285 + L1MC4 LINE L1 6659 6707 -1335 43840 43 2 1 chr12 21880590 21886741 -122395748 - L1PA4 LINE L1 0 6155 2 25 65 0 0 chr12 21887933 21887979 -122394510 + AT_rich Low_complexity Low_complexity 1 46 0 24 32 0 0 chr12 21888277 21888308 -122394181 + AT_rich Low_complexity Low_complexity 1 31 0 2567 237 51 8 chr12 21888354 21888979 -122393510 - MER82 DNA MER2_type -1 652 1 279 286 200 8 chr12 21889266 21889521 -122392968 + L1MC4a LINE L1 5639 5942 -1866 23 33 0 0 chr12 21889958 21889988 -122392501 + AT_rich Low_complexity Low_complexity 1 30 0 333 331 41 35 chr12 21890037 21890182 -122392307 + L2 LINE L2 3125 3270 -2 22 35 0 0 chr12 21890217 21890246 -122392243 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr12 21890808 21890837 -122391652 + AT_rich Low_complexity Low_complexity 1 29 0 193 341 73 0 chr12 21891091 21891173 -122391316 - MIR SINE MIR -128 134 47 875 316 19 0 chr12 21892214 21892470 -122390019 - MIR SINE MIR 0 262 2 4947 214 14 3 chr12 21892881 21893973 -122388516 + L1PA15-16 LINE L1 1891 3000 -3849 181 191 149 0 chr12 21893991 21894038 -122388451 + MIR SINE MIR 196 249 -13 1416 162 37 68 chr12 21894076 21894372 -122388117 - AluJb SINE Alu -23 289 3 234 366 30 24 chr12 21894382 21894546 -122387943 - L1ME LINE L1 -588 5854 5690 3738 279 30 4 chr12 21894668 21896047 -122386442 - L1ME LINE L1 -2460 3966 2552 10437 83 1 9 chr12 21896055 21898185 -122384304 - L1PA6 LINE L1 -13 6141 3947 9866 98 10 0 chr12 21898185 21899558 -122382931 + L1P3 LINE L1 29 1415 -5046 647 236 0 23 chr12 21899560 21899711 -122382778 - L1ME LINE L1 -4008 2599 2451 1687 195 32 6 chr12 21899711 21900049 -122382440 - MER7A DNA MER2_type -1 345 1 647 236 0 23 chr12 21900049 21900071 -122382418 - L1ME LINE L1 -4156 2451 2430 1737 199 119 9 chr12 21900079 21900532 -122381957 - L1ME LINE L1 -4204 2222 1720 * 5435 204 56 54 chr12 21900530 21902018 -122380471 - L1ME LINE L1 -4915 1511 21 496 296 61 36 chr12 21902084 21902446 -122380043 - L1MDa LINE L1 -3231 2984 2614 319 351 27 11 chr12 21902634 21902822 -122379667 - L1MDa LINE L1 -3846 2369 2179 1598 184 64 50 chr12 21902938 21903296 -122379193 + MLT1A1 LTR MaLR 3 365 0 227 260 13 13 chr12 21903594 21903671 -122378818 - L1MDa LINE L1 -4618 1597 1521 374 298 29 55 chr12 21903714 21903952 -122378537 - L1MDa LINE L1 -4912 1484 1253 254 240 13 67 chr12 21904050 21904200 -122378289 + T-rich Low_complexity Low_complexity 5 146 0 21 0 0 0 chr12 21905036 21905057 -122377432 + AT_rich Low_complexity Low_complexity 1 21 0 216 159 45 0 chr12 21905907 21905951 -122376538 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 2499 53 3 0 chr12 21906356 21906655 -122375834 - AluY SINE Alu -11 300 1 23 54 0 0 chr12 21907062 21907099 -122375390 + AT_rich Low_complexity Low_complexity 1 37 0 2031 130 3 0 chr12 21907170 21907462 -122375027 + AluSg SINE Alu 1 293 -17 275 104 21 0 chr12 21907608 21907656 -122374833 + L1MA9 LINE L1 6252 6300 -12 565 253 160 3 chr12 21907935 21908394 -122374095 - MER114 LTR ERV -6 642 88 5951 101 19 16 chr12 21908434 21910436 -122372053 + L1PA14 LINE L1 4183 6161 0 28 35 0 35 chr12 21910472 21910494 -122371995 + AT_rich Low_complexity Low_complexity 1 22 -33 1845 174 0 0 chr12 21910494 21910787 -122371702 + AluSx SINE Alu 14 306 -6 28 35 0 35 chr12 21910787 21910821 -122371668 + AT_rich Low_complexity Low_complexity 22 55 0 289 246 0 73 chr12 21912161 21912271 -122370218 - L1MDa LINE L1 -5476 729 628 1447 191 88 9 chr12 21912271 21912600 -122369889 - MLT1A1 LTR MaLR 0 365 11 210 263 20 101 chr12 21913720 21913819 -122368670 + L2 LINE L2 3178 3268 -4 298 305 79 30 chr12 21914127 21914291 -122368198 + L1MC2 LINE L1 612 990 -5656 * 1813 212 45 27 chr12 21914276 21914313 -122368176 + L1MC2 LINE L1 1323 1358 -5288 1208 244 58 19 chr12 21914313 21914673 -122367816 + MLT1A2 LTR MaLR 1 374 0 1813 212 45 27 chr12 21914673 21915150 -122367339 + L1MC2 LINE L1 1358 1846 -4800 2935 197 24 26 chr12 21915157 21915836 -122366653 + L1MC2 LINE L1 5752 6428 -414 3709 212 51 23 chr12 21916335 21916560 -122365929 - L1MB2 LINE L1 -12 5983 5766 2173 118 0 19 chr12 21916560 21916874 -122365615 - AluSg SINE Alu 0 310 3 3709 212 51 23 chr12 21916874 21917883 -122364606 - L1MB2 LINE L1 -229 5766 4711 1436 271 67 27 chr12 21917879 21918687 -122363802 - L1MB2 LINE L1 -4586 1315 365 * 376 273 114 53 chr12 21918984 21919211 -122363278 - L1MB2 LINE L1 -5650 241 1 807 319 48 69 chr12 21919746 21920408 -122362081 - L2 LINE L2 -119 3194 2547 1217 225 24 78 chr12 21920409 21920791 -122361698 - MLT1A1 LTR MaLR -4 361 1 693 203 94 61 chr12 21921611 21921823 -122360666 + MER20 DNA MER1_type 1 219 0 430 267 103 75 chr12 21922087 21922447 -122360042 - HAL1 LINE L1 -1244 1263 894 2188 77 53 0 chr12 21922527 21922812 -122359677 - AluY SINE Alu -11 300 1 22 35 0 0 chr12 21922978 21923007 -122359482 + AT_rich Low_complexity Low_complexity 1 29 0 195 304 0 43 chr12 21923785 21923854 -122358635 + L2 LINE L2 1832 1897 -1417 482 327 40 5 chr12 21924104 21924303 -122358186 - MLT1J LTR MaLR -300 211 6 250 343 67 29 chr12 21924888 21924993 -122357496 + L2 LINE L2 3175 3283 -30 284 250 0 0 chr12 21925807 21925871 -122356618 + Tigger2 DNA MER2_type 1 64 -2654 239 342 13 0 chr12 21925946 21926022 -122356467 - MER2 DNA MER2_type -268 77 1 328 323 91 32 chr12 21926324 21926823 -122355666 + L1ME4a LINE L1 5527 6064 -57 2228 141 28 0 chr12 21926823 21927177 -122355312 + THE1B LTR MaLR 1 364 0 328 323 91 32 chr12 21927177 21927238 -122355251 + L1ME4a LINE L1 6064 6120 -1 272 284 80 0 chr12 21928196 21928284 -122354205 + L2 LINE L2 3178 3272 0 246 186 16 33 chr12 21929733 21929801 -122352688 - Charlie8 DNA MER1_type -997 1420 1362 362 296 0 32 chr12 21929876 21930001 -122352488 - Charlie8 DNA MER1_type -2204 213 93 327 177 0 0 chr12 21930414 21930476 -122352013 - L1MB1 LINE L1 -1 5991 5930 1262 189 24 0 chr12 21930476 21930730 -122351759 + Tigger2 DNA MER2_type 3 262 -2456 1331 325 20 47 chr12 21930741 21931374 -122351115 + L1PA13 LINE L1 788 1403 -6171 306 320 10 0 chr12 21931495 21931592 -122350897 + L1PA13 LINE L1 2085 2182 -5399 4900 265 33 25 chr12 21931861 21931966 -122350523 + L1PA13 LINE L1 2203 2306 -5278 1646 189 3 3 chr12 21931966 21932251 -122350238 - AluJb SINE Alu -27 285 1 4900 265 33 25 chr12 21932251 21934869 -122347620 + L1PA13 LINE L1 2306 4992 -2592 12710 178 20 11 chr12 21934906 21937251 -122345238 + Tigger2 DNA MER2_type 251 2615 -103 1277 174 14 5 chr12 21937252 21937470 -122345019 + MSTA LTR MaLR 1 220 -208 3459 175 34 14 chr12 21937485 21938183 -122344306 - L1MB1 LINE L1 -124 5868 5157 1844 127 11 7 chr12 21938211 21938495 -122343994 - AluSx SINE Alu -18 294 10 1243 184 37 52 chr12 21938495 21938762 -122343727 - L1MA8 LINE L1 -11 6280 6017 2455 166 24 11 chr12 21938762 21939214 -122343275 + LTR22A LTR ERVK 1 458 0 1243 184 37 52 chr12 21939214 21939273 -122343216 - L1MA8 LINE L1 -274 6017 5959 1741 152 29 3 chr12 21939286 21939596 -122342893 - L1PB3 LINE L1 -2 6152 5835 252 295 34 13 chr12 21939596 21939745 -122342744 - L1MB1 LINE L1 -825 5145 4994 * 6137 225 48 70 chr12 21939733 21942070 -122340419 - L1MB1 LINE L1 -1327 4643 2357 546 219 10 0 chr12 21942083 21942179 -122340310 - MER2 DNA MER2_type -247 98 2 239 219 24 24 chr12 21942181 21942263 -122340226 - L1MB1 LINE L1 -3615 2355 2274 1170 181 11 67 chr12 21942350 21942549 -122339940 - MSTB-int LTR MaLR -1116 535 353 2266 91 0 3 chr12 21942549 21942846 -122339643 - AluY SINE Alu -15 296 1 1170 181 11 67 chr12 21942846 21942916 -122339573 - MSTB-int LTR MaLR -1298 353 281 1098 83 6 13 chr12 21942916 21943072 -122339417 - AluSp SINE Alu -158 155 1 191 59 0 29 chr12 21943145 21943179 -122339310 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1588 179 11 0 chr12 21943208 21943488 -122339001 - MSTB-int LTR MaLR -1368 283 1 1791 220 59 5 chr12 21943488 21943892 -122338597 - MSTB LTR MaLR 0 426 1 599 302 73 90 chr12 21943894 21944165 -122338324 - L1MB1 LINE L1 -5110 781 507 197 33 33 0 chr12 21944165 21944195 -122338294 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 599 302 73 90 chr12 21944195 21944743 -122337746 - L1MB1 LINE L1 -5384 507 210 603 342 26 4 chr12 21944768 21944996 -122337493 - L1MB1 LINE L1 -5651 240 8 1284 290 82 30 chr12 21945007 21945613 -122336876 - HsTC2a DNA Tc2 -102 642 5 189 238 175 0 chr12 21946272 21946335 -122336154 - L2 LINE L2 -1 3312 3239 326 214 51 86 chr12 21946997 21947114 -122335375 - MER63 DNA MER1_type -309 753 15 378 373 113 0 chr12 21947405 21947652 -122334837 + L3 LINE CR1 1278 1552 -25 202 50 50 25 chr12 21947826 21947866 -122334623 + (TTTTC)n Simple_repeat Simple_repeat 5 45 0 21 36 0 0 chr12 21948441 21948469 -122334020 + AT_rich Low_complexity Low_complexity 1 28 0 1928 131 3 11 chr12 21948521 21948856 -122333633 - AluSx SINE Alu 0 333 1 215 338 39 0 chr12 21948856 21948933 -122333556 + L2 LINE L2 3234 3313 0 235 244 13 39 chr12 21948953 21949031 -122333458 + L1ME LINE L1 5841 5916 -205 3957 57 0 6 chr12 21950638 21951143 -122331346 + L1PA8 LINE L1 5666 6167 -5 22 0 0 0 chr12 21951564 21951586 -122330903 + AT_rich Low_complexity Low_complexity 1 22 0 276 309 154 44 chr12 21951691 21951827 -122330662 - MIR SINE MIR -100 162 12 247 265 29 0 chr12 21952477 21952545 -122329944 - MIR3 SINE MIR -3 205 136 882 259 25 0 chr12 21952918 21953154 -122329335 + Charlie1 DNA MER1_type 1 242 -2519 451 224 0 40 chr12 21953139 21953264 -122329225 + Charlie1 DNA MER1_type 2624 2743 -18 * 204 204 74 19 chr12 21953283 21953337 -122329152 - MIR SINE MIR -86 176 120 1248 222 116 6 chr12 21953406 21953735 -122328754 - MLT1A1 LTR MaLR 0 365 1 28 79 0 0 chr12 21953947 21954010 -122328479 + AT_rich Low_complexity Low_complexity 1 63 0 230 321 110 37 chr12 21954200 21954309 -122328180 - MIR3 SINE MIR -3 205 89 310 284 11 11 chr12 21954502 21954597 -122327892 + CT-rich Low_complexity Low_complexity 2 96 0 5077 180 20 9 chr12 21955896 21957799 -122324690 - L1PA16 LINE L1 -10 6156 4233 42332 35 22 2 chr12 21957816 21963843 -122318646 - L1PA2 LINE L1 -3 6152 4 3020 221 14 42 chr12 21963847 21964698 -122317791 - L1 LINE L1 -1904 4242 3416 243 61 0 0 chr12 21964885 21964918 -122317571 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 254 352 57 0 chr12 21966877 21967036 -122315453 - L2 LINE L2 -300 2972 2805 252 309 96 34 chr12 21967079 21967257 -122315232 + L3 LINE CR1 818 1006 -571 680 286 98 137 chr12 21967736 21968517 -122313972 - L2 LINE L2 0 3313 2503 1920 147 3 3 chr12 21968517 21968816 -122313673 - AluSx SINE Alu -13 299 1 680 286 98 137 chr12 21968816 21969119 -122313370 - L2 LINE L2 -810 2503 2198 524 247 0 0 chr12 21969119 21969246 -122313243 - FRAM SINE Alu 0 180 54 680 286 98 137 chr12 21969246 21969484 -122313005 - L2 LINE L2 -1115 2198 1952 685 94 9 0 chr12 21969490 21969596 -122312893 + AluSg/x SINE Alu 197 303 -6 2351 201 7 56 chr12 21969596 21970149 -122312340 + L1 LINE L1 3696 4221 -1925 2097 180 50 16 chr12 21970148 21970729 -122311760 + L1P5 LINE L1 5116 5711 -445 * 26 30 0 0 chr12 21970899 21970932 -122311557 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr12 21971128 21971153 -122311336 + (A)n Simple_repeat Simple_repeat 1 25 0 324 120 0 0 chr12 21971153 21971203 -122311286 + (TA)n Simple_repeat Simple_repeat 2 51 0 22 56 0 0 chr12 21973647 21973683 -122308806 + AT_rich Low_complexity Low_complexity 1 36 0 314 365 66 10 chr12 21973683 21973880 -122308609 - MIR SINE MIR 0 262 55 245 284 0 0 chr12 21973921 21973988 -122308501 + (TA)n Simple_repeat Simple_repeat 2 68 0 3584 179 47 61 chr12 21974469 21974888 -122307601 + L1MC2 LINE L1 5478 5901 -443 1876 163 0 10 chr12 21974888 21975201 -122307288 + AluSg SINE Alu 1 310 0 3584 179 47 61 chr12 21975201 21975649 -122306840 + L1MC2 LINE L1 5901 6333 -11 286 200 12 24 chr12 21975664 21975749 -122306740 + L1MC4 LINE L1 5347 5430 -2378 752 287 15 48 chr12 21975809 21976143 -122306346 + L1MC4 LINE L1 5613 5935 -1873 22 56 0 0 chr12 21976625 21976661 -122305828 + AT_rich Low_complexity Low_complexity 1 36 0 274 167 39 26 chr12 21976733 21976811 -122305678 + (TA)n Simple_repeat Simple_repeat 2 80 0 438 295 48 21 chr12 21976858 21977228 -122305261 - L1MEc LINE L1 -912 1664 1492 1008 242 118 31 chr12 21977228 21977584 -122304905 + MLT1D LTR MaLR 39 425 -80 3304 145 41 3 chr12 21977824 21978410 -122304079 - L1MC1 LINE L1 0 6333 5726 2763 249 17 35 chr12 21978415 21979076 -122303413 - L1M4 LINE L1 -1796 4350 3706 2319 100 3 0 chr12 21979076 21979385 -122303104 - AluSp SINE Alu -3 310 1 2763 249 17 35 chr12 21979385 21979561 -122302928 - L1M4 LINE L1 -2440 3706 3528 3661 58 0 2 chr12 21979578 21980044 -122302445 - L1PA5 LINE L1 0 6154 5690 289 184 58 58 chr12 21980044 21980141 -122302348 + U2 snRNA snRNA 12 108 -80 1156 155 63 38 chr12 21980144 21980383 -122302106 - LTR8-int LTR ERV1 -3672 2274 2030 284 230 23 11 chr12 21980383 21980470 -122302019 - L1MC4 LINE L1 -1340 6702 6615 * 323 202 22 34 chr12 21980392 21980481 -122302008 + L1MC4 LINE L1 6616 6703 -1339 9786 157 53 65 chr12 21980559 21982680 -122299809 - LTR8-int LTR ERV1 -4161 2102 6 3904 143 11 73 chr12 21982685 21983422 -122299067 - LTR8 LTR ERV1 0 691 1 3231 275 26 30 chr12 21983425 21984775 -122297714 - L1P LINE L1 -3126 3020 1676 759 239 36 18 chr12 21985614 21985923 -122296566 - L1MCa LINE L1 -3950 2476 2280 4412 183 104 61 chr12 21985955 21986475 -122296014 - L1MCa LINE L1 -4538 1888 1392 2247 99 0 0 chr12 21986475 21986768 -122295721 - AluSg SINE Alu -17 293 1 4412 183 104 61 chr12 21986768 21987501 -122294988 - L1MCa LINE L1 -5034 1392 580 26 0 0 0 chr12 21987620 21987646 -122294843 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr12 21987781 21987804 -122294685 + AT_rich Low_complexity Low_complexity 1 23 0 5268 182 11 19 chr12 21988632 21989604 -122292885 - Tigger1 DNA MER2_type -1451 967 3 475 261 73 6 chr12 21989652 21989817 -122292672 + HAL1 LINE L1 2332 2507 0 14076 159 24 6 chr12 21989913 21991635 -122290854 + L1MA1 LINE L1 1093 2874 -4691 207 0 0 0 chr12 21991635 21991658 -122290831 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 14076 159 24 6 chr12 21991658 21992388 -122290101 + L1MA1 LINE L1 2874 3589 -3976 543 192 0 0 chr12 21992392 21992491 -122289998 - MSTA LTR MaLR -4 424 326 12533 190 21 21 chr12 21992493 21996582 -122285907 + L1MA1 LINE L1 3640 7721 0 1877 215 26 11 chr12 21996853 21997230 -122285259 - MSTB LTR MaLR -1 425 43 1993 142 19 9 chr12 21997235 21997558 -122284931 - MER61E LTR ERV1 -4 565 240 2535 52 0 10 chr12 21998709 21999017 -122283472 - AluY SINE Alu -6 305 1 358 241 84 0 chr12 21999150 21999233 -122283256 - MIR SINE MIR -78 184 95 2200 100 0 7 chr12 21999627 21999928 -122282561 + AluSq SINE Alu 1 299 -14 535 174 0 0 chr12 22002524 22002610 -122279879 + AluS SINE Alu 1 86 -227 9551 69 4 2 chr12 22002610 22003881 -122278608 - L1P LINE L1 -1611 4535 3262 357 24 0 0 chr12 22004847 22004889 -122277600 + (TG)n Simple_repeat Simple_repeat 2 43 0 210 204 0 20 chr12 22004895 22004944 -122277545 + (TA)n Simple_repeat Simple_repeat 1 48 0 832 220 20 20 chr12 22004944 22005144 -122277345 - L1M3 LINE L1 -377 5791 5592 * 2394 267 28 13 chr12 22005140 22005843 -122276646 - L1M3 LINE L1 -969 5177 4464 428 92 0 0 chr12 22005845 22005910 -122276579 - L1MA3 LINE L1 0 6305 6241 13335 166 28 56 chr12 22005911 22010647 -122271842 - L1PA11 LINE L1 -137 6273 1988 1803 171 0 3 chr12 22010647 22010939 -122271550 - AluJb SINE Alu -21 291 1 13335 166 28 56 chr12 22010939 22012856 -122269633 - L1PA11 LINE L1 -4422 1988 19 239 288 0 0 chr12 22012975 22013034 -122269455 + CT-rich Low_complexity Low_complexity 2 60 0 23 33 0 0 chr12 22015267 22015297 -122267192 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr12 22015547 22015571 -122266918 + AT_rich Low_complexity Low_complexity 1 24 0 783 309 223 14 chr12 22016175 22016758 -122265731 + L2 LINE L2 2 706 -2608 208 250 50 25 chr12 22016760 22016840 -122265649 + L2 LINE L2 2330 2411 -903 21 36 0 0 chr12 22018690 22018718 -122263771 + AT_rich Low_complexity Low_complexity 1 28 0 715 315 81 17 chr12 22018839 22019306 -122263183 - L1M3 LINE L1 -2062 4084 3588 385 299 119 40 chr12 22019365 22019760 -122262729 - L1M3 LINE L1 -2615 3531 3106 401 211 35 35 chr12 22019794 22019908 -122262581 - MLT1C LTR MaLR -301 166 53 586 214 13 0 chr12 22020331 22020654 -122261835 + (TA)n Simple_repeat Simple_repeat 1 327 0 506 278 78 67 chr12 22020654 22021514 -122260975 - L1M3 LINE L1 -3127 3019 2151 2236 232 8 23 chr12 22021667 22022192 -122260297 - LTR40a LTR ERVL -2 517 1 928 236 10 5 chr12 22022192 22022391 -122260098 - HERVL40 LTR ERVL 0 5530 5331 366 331 8 15 chr12 22022391 22022521 -122259968 + LTR40a LTR ERVL 256 384 -135 1673 35 0 0 chr12 22023861 22024062 -122258427 + L1PA4 LINE L1 5948 6148 -7 2199 105 0 3 chr12 22024414 22024709 -122257780 + AluSx SINE Alu 1 294 -18 460 331 93 23 chr12 22024783 22025085 -122257404 + L1MC/D LINE L1 4061 4383 -1763 333 0 0 0 chr12 22025143 22025180 -122257309 + (CA)n Simple_repeat Simple_repeat 2 38 0 20747 160 29 18 chr12 22025214 22026335 -122256154 + L1MA2 LINE L1 12 1118 -6606 1823 132 36 33 chr12 22026335 22026669 -122255820 - MER1B DNA MER1_type 0 337 3 20747 160 29 18 chr12 22026669 22029925 -122252564 + L1MA2 LINE L1 1118 4500 -3224 2268 109 0 3 chr12 22029925 22030229 -122252260 + AluSc SINE Alu 1 303 -6 20747 160 29 18 chr12 22030229 22033008 -122249481 + L1MA2 LINE L1 4500 7245 -479 1156 56 0 0 chr12 22033007 22033150 -122249339 + L1PA2 LINE L1 1 143 -6003 * 23884 28 0 0 chr12 22033151 22036780 -122245709 + L1PA2 LINE L1 2528 6155 0 2931 127 12 22 chr12 22036780 22036915 -122245574 + L1MA2 LINE L1 7233 7368 -355 2042 148 3 0 chr12 22036915 22037213 -122245276 + AluSx SINE Alu 1 299 -13 2931 127 12 22 chr12 22037213 22037573 -122244916 + L1MA2 LINE L1 7368 7723 0 38 98 0 0 chr12 22037573 22037695 -122244794 + AT_rich Low_complexity Low_complexity 1 122 0 252 310 8 0 chr12 22037781 22037910 -122244579 + (TA)n Simple_repeat Simple_repeat 2 131 0 375 23 0 0 chr12 22037940 22037984 -122244505 + (TG)n Simple_repeat Simple_repeat 1 44 0 582 192 14 174 chr12 22037996 22038272 -122244217 + MER21B LTR ERV1 17 248 -615 1012 221 98 96 chr12 22038363 22038739 -122243750 + MER21B LTR ERV1 439 815 -48 295 244 0 24 chr12 22038764 22038887 -122243602 + (TATG)n Simple_repeat Simple_repeat 2 121 0 263 293 53 75 chr12 22039039 22039664 -122242825 + L1MC/D LINE L1 4631 5241 -905 237 238 20 69 chr12 22039807 22039908 -122242581 + L1MC/D LINE L1 5384 5479 -865 254 258 22 67 chr12 22040423 22040512 -122241977 - MIR SINE MIR -81 181 97 285 266 0 0 chr12 22040554 22040633 -122241856 + MER116 DNA Mariner 2 80 0 22 35 0 0 chr12 22040886 22040915 -122241574 + AT_rich Low_complexity Low_complexity 1 29 0 1864 132 7 4 chr12 22041338 22041650 -122240839 - AluSx SINE Alu 0 313 1 2347 103 0 0 chr12 22041778 22042080 -122240409 + AluSg SINE Alu 1 302 -8 285 98 0 0 chr12 22042322 22042363 -122240126 + (TA)n Simple_repeat Simple_repeat 2 42 0 257 327 59 0 chr12 22043535 22043636 -122238853 + MIR SINE MIR 100 206 -56 1662 176 30 36 chr12 22044995 22045296 -122237193 - AluJo SINE Alu -11 301 3 398 329 19 19 chr12 22045483 22045641 -122236848 - MER5A DNA MER1_type -31 158 1 533 65 26 0 chr12 22045948 22046025 -122236464 + (TTTC)n Simple_repeat Simple_repeat 3 81 0 331 253 30 30 chr12 22046877 22046976 -122235513 - MER5B DNA MER1_type 0 178 80 317 133 117 0 chr12 22047808 22047868 -122234621 - MIR SINE MIR -79 183 117 570 223 14 58 chr12 22047892 22048031 -122234458 + MER5B DNA MER1_type 46 178 0 228 136 0 0 chr12 22048511 22048555 -122233934 - LTR66 LTR ERVL -173 437 394 300 207 0 46 chr12 22048555 22048642 -122233847 - L1MC4 LINE L1 -1345 6697 6615 189 171 0 0 chr12 22048646 22048681 -122233808 + (TA)n Simple_repeat Simple_repeat 1 35 0 554 201 0 15 chr12 22048704 22048838 -122233651 + (TATATG)n Simple_repeat Simple_repeat 1 132 0 240 306 124 23 chr12 22050924 22051189 -122231300 + L2 LINE L2 1793 2084 -1230 1704 163 7 23 chr12 22051311 22051612 -122230877 - AluSq SINE Alu -17 296 1 1026 120 0 0 chr12 22051612 22051745 -122230744 - AluSq/x SINE Alu -178 135 3 215 122 0 24 chr12 22051875 22051916 -122230573 + (TA)n Simple_repeat Simple_repeat 1 40 0 197 304 27 45 chr12 22053031 22053143 -122229346 - L2 LINE L2 -5 3308 3199 583 254 92 0 chr12 22053528 22053670 -122228819 - MER63A DNA MER1_type -1 209 55 2250 102 0 3 chr12 22055088 22055382 -122227107 - AluSx SINE Alu -19 293 1 286 271 125 105 chr12 22056938 22057289 -122225200 + HAL1 LINE L1 43 400 -2107 3253 267 95 38 chr12 22057425 22058893 -122223596 + HAL1 LINE L1 613 2164 -343 9458 165 76 36 chr12 22058934 22059366 -122223123 - Tigger1 DNA MER2_type -1 2417 2004 2323 65 0 7 chr12 22059366 22059658 -122222831 - AluY SINE Alu -21 290 1 9458 165 76 36 chr12 22059658 22060433 -122222056 - Tigger1 DNA MER2_type -414 2004 1261 1825 143 0 0 chr12 22060433 22060699 -122221790 + AluSx SINE Alu 35 300 -12 9458 165 76 36 chr12 22060699 22061547 -122220942 - Tigger1 DNA MER2_type -1157 1261 279 1423 179 4 48 chr12 22061553 22061821 -122220668 + AluJb SINE Alu 7 262 -50 1542 172 32 4 chr12 22061859 22062138 -122220351 - Tigger1 DNA MER2_type -2129 289 3 1897 131 7 13 chr12 22062186 22062484 -122220005 + AluSx SINE Alu 1 296 -16 1804 100 35 4 chr12 22062486 22062747 -122219742 + AluY SINE Alu 43 311 0 326 225 119 31 chr12 22062764 22062924 -122219565 + HAL1 LINE L1 2334 2507 0 436 358 83 42 chr12 22065047 22065598 -122216891 + L2 LINE L2 1711 2284 -1030 929 202 145 3 chr12 22065631 22065928 -122216561 + Charlie4a DNA MER1_type 169 507 -1 2269 78 14 3 chr12 22066879 22067173 -122215316 - AluY SINE Alu -13 298 2 970 313 68 28 chr12 22068101 22068456 -122214033 + MER70B LTR ERVL 1 369 -209 26 30 0 0 chr12 22068628 22068661 -122213828 + AT_rich Low_complexity Low_complexity 1 33 0 278 368 81 0 chr12 22068690 22068826 -122213663 + L3 LINE CR1 488 634 -943 2043 139 0 0 chr12 22069239 22069552 -122212937 - AluSx SINE Alu 0 315 3 192 77 0 0 chr12 22069645 22069671 -122212818 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 342 274 12 0 chr12 22070712 22070796 -122211693 + L2 LINE L2 3227 3311 -2 669 235 0 15 chr12 22070870 22071006 -122211483 - MLT1A1 LTR MaLR 0 365 232 4147 113 3 21 chr12 22071008 22071629 -122210860 - MER4B LTR ERV1 0 610 1 18455 110 24 9 chr12 22071629 22072032 -122210457 - MER4B-int LTR ERV1 0 6758 6363 1686 173 3 46 chr12 22072032 22072355 -122210134 + AluJb SINE Alu 3 311 -1 18455 110 24 9 chr12 22072355 22074707 -122207782 - MER4B-int LTR ERV1 -395 6363 3960 2416 115 22 3 chr12 22074707 22075064 -122207425 + THE1B LTR MaLR 1 364 0 9269 100 61 69 chr12 22075064 22076657 -122205832 + THE1B-int LTR MaLR 1 1580 0 2366 117 4 8 chr12 22076659 22077012 -122205477 + THE1B LTR MaLR 3 420 -12 11463 139 38 10 chr12 22077606 22078966 -122203523 - MER4B-int LTR ERV1 -2797 3961 2529 1739 179 20 0 chr12 22078966 22079094 -122203395 + AluJb SINE Alu 1 125 -187 207 0 0 0 chr12 22079094 22079117 -122203372 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1739 179 20 0 chr12 22079117 22079289 -122203200 + AluJb SINE Alu 125 307 -5 11463 139 38 10 chr12 22079289 22079898 -122202591 - MER4B-int LTR ERV1 -4229 2529 1938 608 197 160 21 chr12 22079898 22080086 -122202403 - MER4B-int LTR ERV1 -5123 1475 1262 314 189 0 44 chr12 22080132 22080222 -122202267 - MER4B-int LTR ERV1 -5764 834 749 2537 148 132 22 chr12 22080286 22080793 -122201696 - MER4B-int LTR ERV1 -6035 563 1 3473 148 15 26 chr12 22080796 22081411 -122201078 - MER4B LTR ERV1 0 610 3 1001 216 19 14 chr12 22081424 22081637 -122200852 - MLT1A1 LTR MaLR -146 219 6 191 313 60 0 chr12 22081681 22081748 -122200741 + L3 LINE CR1 882 952 -625 380 240 240 0 chr12 22082440 22082565 -122199924 - MIR SINE MIR -2 260 106 230 311 19 0 chr12 22084103 22084209 -122198280 + (TA)n Simple_repeat Simple_repeat 1 108 0 387 258 33 8 chr12 22084557 22084677 -122197812 - L2 LINE L2 -8 3305 3183 724 149 27 34 chr12 22085830 22085978 -122196511 - L1MB1 LINE L1 -13 6155 6009 1481 198 67 60 chr12 22086957 22087377 -122195112 + MER31B LTR ERV1 14 436 -30 273 370 49 12 chr12 22087737 22087899 -122194590 + MIR SINE MIR 95 262 0 494 331 53 7 chr12 22087899 22088050 -122194439 - L2 LINE L2 0 3272 3115 266 317 58 29 chr12 22088151 22088255 -122194234 + MIR SINE MIR 8 114 -148 357 308 60 11 chr12 22088281 22088463 -122194026 - LTR33A LTR ERVL -7 516 326 304 280 43 81 chr12 22088483 22088669 -122193820 - LTR33A LTR ERVL -344 179 1 1039 225 46 0 chr12 22089712 22089930 -122192559 - MIR SINE MIR -4 258 31 254 222 16 0 chr12 22089990 22090053 -122192436 + L1ME4a LINE L1 5952 6015 -106 22 70 0 0 chr12 22091173 22091216 -122191273 + AT_rich Low_complexity Low_complexity 1 43 0 476 253 112 76 chr12 22091563 22091840 -122190649 - L2 LINE L2 -804 2510 2224 255 235 0 94 chr12 22092070 22092155 -122190334 + MIR SINE MIR 186 262 0 23 68 0 0 chr12 22094543 22094587 -122187902 + AT_rich Low_complexity Low_complexity 1 44 0 2029 133 10 0 chr12 22096119 22096427 -122186062 + AluSx SINE Alu 1 311 -1 352 55 36 0 chr12 22096427 22096482 -122186007 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 318 294 79 89 chr12 22096651 22096867 -122185622 + L2 LINE L2 1772 1986 -1328 3097 99 25 8 chr12 22096867 22097343 -122185146 - L1MA1 LINE L1 -5 6297 5814 318 294 79 89 chr12 22097343 22097418 -122185071 + L2 LINE L2 1986 2060 -1254 1557 178 32 3 chr12 22097540 22097849 -122184640 + L1MC1 LINE L1 6011 6328 -5 455 237 67 77 chr12 22098022 22098216 -122184273 + MLT1K LTR MaLR 397 588 0 331 331 184 36 chr12 22098245 22098793 -122183696 + L2 LINE L2 2623 3272 0 560 273 173 74 chr12 22098794 22099310 -122183179 + L1ME4a LINE L1 5423 6007 -114 2405 74 3 10 chr12 22099310 22099620 -122182869 + AluSc SINE Alu 1 308 -1 560 273 173 74 chr12 22099620 22099700 -122182789 + L1ME4a LINE L1 6007 6078 -43 299 308 145 0 chr12 22099741 22099858 -122182631 - MIR SINE MIR -124 138 5 2315 90 0 7 chr12 22100252 22100562 -122181927 + AluSq SINE Alu 4 311 -2 222 150 0 0 chr12 22102228 22102268 -122180221 + (A)n Simple_repeat Simple_repeat 1 40 0 303 280 149 17 chr12 22102712 22102887 -122179602 + MIR SINE MIR 51 248 -14 21 0 0 0 chr12 22103884 22103905 -122178584 + AT_rich Low_complexity Low_complexity 1 21 0 273 286 12 0 chr12 22103944 22104028 -122178461 + L1ME1 LINE L1 5530 5614 -507 347 234 121 8 chr12 22104034 22104158 -122178331 + L1MEd LINE L1 8 145 -5974 399 294 116 25 chr12 22104346 22104784 -122177705 + L1MEd LINE L1 561 1038 -5081 388 284 157 26 chr12 22104814 22105043 -122177446 + MIR SINE MIR 4 262 0 556 294 67 91 chr12 22105046 22105773 -122176716 + L1MEd LINE L1 2093 2802 -3327 1989 184 70 12 chr12 22105862 22106275 -122176214 + MLT1C LTR MaLR 3 439 -28 187 263 105 0 chr12 22106393 22106450 -122176039 + L3 LINE CR1 1502 1564 -13 203 175 25 0 chr12 22106749 22106789 -122175700 + (GGGTG)n Simple_repeat Simple_repeat 5 45 0 21 36 0 0 chr12 22107273 22107301 -122175188 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr12 22107395 22107423 -122175066 + AT_rich Low_complexity Low_complexity 1 28 0 478 312 79 86 chr12 22107661 22108103 -122174386 + HAL1 LINE L1 114 552 -1955 351 320 13 45 chr12 22108191 22108347 -122174142 + HAL1 LINE L1 689 839 -1668 1398 60 0 0 chr12 22108351 22108518 -122173971 + AluY SINE Alu 131 297 -14 1190 236 38 40 chr12 22108533 22108906 -122173583 + L1ME1 LINE L1 5629 6000 -166 642 196 12 12 chr12 22108930 22109093 -122173396 + L1MA10 LINE L1 6163 6325 -9 40087 71 7 3 chr12 22109181 22115313 -122167176 + L1PA6 LINE L1 1 6154 0 1421 284 167 27 chr12 22115428 22116453 -122166036 + HAL1 LINE L1 972 2139 -368 664 241 41 36 chr12 22116468 22116834 -122165655 + L1MC5 LINE L1 6894 7233 -728 1558 218 71 35 chr12 22116893 22117487 -122165002 + L1MC5 LINE L1 7260 7843 -118 248 311 44 64 chr12 22117603 22117854 -122164635 + HAL1 LINE L1 2220 2465 -42 24 53 0 0 chr12 22117869 22117907 -122164582 + AT_rich Low_complexity Low_complexity 1 38 0 306 335 124 10 chr12 22117978 22118172 -122164317 + L2 LINE L2 2458 2673 -641 421 272 77 2 chr12 22118182 22118343 -122164146 + MIR SINE MIR 33 203 -45 449 248 20 0 chr12 22118439 22118540 -122163949 - MER5A DNA MER1_type -77 112 10 464 300 62 0 chr12 22118897 22119057 -122163432 + MIR SINE MIR 66 235 -27 2110 35 0 0 chr12 22119084 22119338 -122163151 - L1PA4 LINE L1 0 6155 5902 207 375 31 10 chr12 22119488 22119584 -122162905 + MIR SINE MIR 24 121 -87 2534 154 25 25 chr12 22119609 22120095 -122162394 - MER66B LTR ERV1 0 486 1 2183 113 3 3 chr12 22120480 22120789 -122161700 + AluSp SINE Alu 5 313 0 264 318 0 0 chr12 22121076 22121142 -122161347 + L2 LINE L2 3225 3290 -23 1528 182 27 24 chr12 22123548 22123575 -122158914 - AluJo SINE Alu -12 300 275 210 37 0 0 chr12 22123575 22123602 -122158887 + (TC)n Simple_repeat Simple_repeat 2 28 0 1528 182 27 24 chr12 22123602 22123871 -122158618 - AluJo SINE Alu -37 275 3 1770 187 12 0 chr12 22126154 22126497 -122155992 - L1MB1 LINE L1 -1 6167 5821 23 0 0 0 chr12 22126650 22126673 -122155816 + AT_rich Low_complexity Low_complexity 1 23 0 2336 82 3 0 chr12 22127552 22127846 -122154643 + AluSg SINE Alu 3 297 -13 1577 137 3 109 chr12 22129562 22129883 -122152606 + MER50 LTR ERV1 1 287 -447 5539 147 3 6 chr12 22129883 22130271 -122152218 + L1PB3 LINE L1 5104 5492 -662 2224 107 3 3 chr12 22130271 22130580 -122151909 + AluSc SINE Alu 1 309 0 5539 147 3 6 chr12 22130580 22131245 -122151244 + L1PB3 LINE L1 5492 6154 0 2138 107 7 0 chr12 22131279 22131578 -122150911 + AluSg SINE Alu 9 309 -1 242 357 54 30 chr12 22131585 22131689 -122150800 - MIR SINE MIR -97 111 17 263 329 98 30 chr12 22132508 22132672 -122149817 + L2 LINE L2 3094 3268 -4 27 0 0 0 chr12 22132696 22132723 -122149766 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr12 22133468 22133505 -122148984 + AT_rich Low_complexity Low_complexity 1 37 0 2382 79 0 0 chr12 22133515 22133820 -122148669 - AluY SINE Alu -6 305 1 270 333 91 38 chr12 22134979 22135111 -122147378 + MIR SINE MIR 88 226 -36 2427 125 6 3 chr12 22135111 22135470 -122147019 + THE1B LTR MaLR 1 360 -4 10131 109 37 37 chr12 22135474 22137054 -122145435 + THE1B-int LTR MaLR 1 1580 0 2346 118 28 3 chr12 22137054 22137409 -122145080 + THE1B LTR MaLR 1 364 0 215 121 61 45 chr12 22138638 22138704 -122143785 + (TTATA)n Simple_repeat Simple_repeat 4 70 0 282 106 0 21 chr12 22138720 22138767 -122143722 + MADE1 DNA Mariner 35 80 0 671 271 19 67 chr12 22141498 22141767 -122140722 + Charlie2 DNA MER1_type 7 262 -2520 2165 222 86 27 chr12 22142054 22142787 -122139702 + Charlie2b DNA MER1_type 1333 2108 -674 1595 158 54 14 chr12 22143027 22143122 -122139367 + AluJb SINE Alu 23 113 -199 225 0 0 0 chr12 22143122 22143147 -122139342 + (CA)n Simple_repeat Simple_repeat 2 26 0 1595 158 54 14 chr12 22143147 22143304 -122139185 + AluJb SINE Alu 113 289 -23 276 30 0 0 chr12 22143304 22143337 -122139152 + (CA)n Simple_repeat Simple_repeat 2 34 0 1595 158 54 14 chr12 22143337 22143362 -122139127 + AluJb SINE Alu 289 312 0 42589 35 21 1 chr12 22143765 22149795 -122132694 + L1PA2 LINE L1 1 6154 -1 659 299 64 47 chr12 22149804 22150334 -122132155 + L1MC/D LINE L1 4068 4618 -1528 219 224 12 24 chr12 22150335 22150420 -122132069 + T-rich Low_complexity Low_complexity 2 85 0 425 287 98 68 chr12 22150681 22151283 -122131206 + L1MC/D LINE L1 4881 5495 -768 207 0 0 0 chr12 22152467 22152490 -122129999 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr12 22152983 22153006 -122129483 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6221 106 26 1 chr12 22153009 22154140 -122128349 - L1PA10 LINE L1 -23 6145 4994 2253 118 52 30 chr12 22154130 22154535 -122127954 + L1PA10 LINE L1 4598 5011 -1135 * 295 233 146 0 chr12 22154602 22154705 -122127784 + MIR SINE MIR 60 177 -85 440 285 49 14 chr12 22154715 22154859 -122127630 - L2 LINE L2 -5 3308 3160 291 104 0 0 chr12 22154914 22154962 -122127527 + (TG)n Simple_repeat Simple_repeat 1 48 0 677 261 143 9 chr12 22155291 22155521 -122126968 - MIR SINE MIR 0 262 2 776 296 110 49 chr12 22155828 22156274 -122126215 - L2 LINE L2 -144 3169 2667 1818 148 16 35 chr12 22156274 22156592 -122125897 + AluJb SINE Alu 1 312 0 776 296 110 49 chr12 22156592 22156768 -122125721 - L2 LINE L2 -646 2667 2503 333 68 0 0 chr12 22157466 22157510 -122124979 + (TG)n Simple_repeat Simple_repeat 1 44 0 694 240 6 34 chr12 22158093 22158272 -122124217 + MER58A DNA MER1_type 12 185 -39 22 0 0 0 chr12 22158273 22158295 -122124194 + AT_rich Low_complexity Low_complexity 1 22 0 748 273 103 75 chr12 22159187 22160443 -122122046 - L1ME3 LINE L1 -306 5925 4617 1628 147 75 18 chr12 22160443 22160722 -122121767 - AluJb SINE Alu -17 295 1 748 273 103 75 chr12 22160722 22160788 -122121701 - L1ME3 LINE L1 -1614 4617 4554 2273 96 3 0 chr12 22160856 22161147 -122121342 + AluSx SINE Alu 3 294 -18 21 36 0 0 chr12 22161834 22161862 -122120627 + AT_rich Low_complexity Low_complexity 1 28 0 1905 121 0 11 chr12 22161982 22162263 -122120226 - AluSx SINE Alu 0 312 35 744 258 22 13 chr12 22162764 22162993 -122119496 + PABL_B LTR ERV1 437 667 0 251 175 0 0 chr12 22162993 22163033 -122119456 - AluSx SINE Alu -262 40 1 246 211 0 0 chr12 22163050 22163102 -122119387 - L1ME3 LINE L1 -3106 3109 3058 414 301 82 50 chr12 22163105 22163800 -122118689 - L1ME3 LINE L1 -3182 3033 2317 328 320 58 13 chr12 22163816 22163972 -122118517 - L1ME3 LINE L1 -4084 2312 2150 320 335 63 37 chr12 22164242 22164591 -122117898 - HAL1 LINE L1 -849 1658 1301 378 323 78 22 chr12 22164597 22164829 -122117660 - L1ME3 LINE L1 -5011 1194 950 21 57 0 0 chr12 22164845 22164880 -122117609 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr12 22165112 22165142 -122117347 + (CA)n Simple_repeat Simple_repeat 1 30 0 581 198 0 0 chr12 22165368 22165469 -122117020 - 7SLRNA srpRNA srpRNA -9 311 211 423 264 107 30 chr12 22165506 22165703 -122116786 + HAL1 LINE L1 1712 1923 -584 856 266 58 54 chr12 22165880 22166365 -122116124 + HAL1 LINE L1 1978 2464 -43 25 65 0 0 chr12 22166382 22166428 -122116061 + AT_rich Low_complexity Low_complexity 1 46 0 2074 133 42 33 chr12 22167156 22167517 -122114972 - THE1B LTR MaLR 0 364 1 663 235 46 7 chr12 22167578 22167731 -122114758 + MER58 DNA MER1_type 1 159 -2261 545 215 0 9 chr12 22167735 22167842 -122114647 + L1MDa LINE L1 21 126 -6414 458 216 93 0 chr12 22167852 22167949 -122114540 + L1MDa LINE L1 250 355 -6185 42757 34 22 1 chr12 22167971 22173990 -122108499 + L1PA2 LINE L1 11 6155 0 908 286 33 94 chr12 22173992 22174447 -122108042 + L2 LINE L2 2058 2484 -830 314 291 8 34 chr12 22174647 22174764 -122107725 - MER94 DNA DNA -19 115 2 630 291 189 25 chr12 22174767 22175452 -122107037 + L2 LINE L2 2507 3313 0 23 0 0 0 chr12 22175937 22175960 -122106529 + AT_rich Low_complexity Low_complexity 1 23 0 739 249 79 84 chr12 22176330 22176784 -122105705 - MLT1J LTR MaLR -49 462 11 1779 181 3 19 chr12 22177969 22178278 -122104211 - AluJo SINE Alu -8 304 1 1535 185 57 26 chr12 22178816 22179149 -122103340 + LTR52 LTR ERVL 1 349 -72 351 44 0 0 chr12 22179149 22179194 -122103295 + (TG)n Simple_repeat Simple_repeat 1 45 0 1535 185 57 26 chr12 22179194 22179244 -122103245 + LTR52 LTR ERVL 349 396 -25 186 393 24 0 chr12 22179456 22179540 -122102949 - L2 LINE L2 -8 3305 3220 1867 171 0 3 chr12 22179743 22180048 -122102441 - AluJb SINE Alu -8 304 1 217 394 87 0 chr12 22180113 22180240 -122102249 - L2 LINE L2 -581 2733 2596 3407 169 83 74 chr12 22181067 22181583 -122100906 + MER63C DNA MER1_type 7 536 -524 3337 62 16 5 chr12 22181583 22182031 -122100458 - L1PA12 LINE L1 0 6168 5716 3407 169 83 74 chr12 22182031 22182430 -122100059 + MER63C DNA MER1_type 536 930 0 746 186 150 0 chr12 22182703 22182870 -122099619 + LTR47A LTR ERVL 261 452 0 182 316 53 21 chr12 22183323 22183418 -122099071 - L2 LINE L2 -1033 2281 2184 561 301 68 9 chr12 22183478 22183697 -122098792 - MIR SINE MIR -25 237 6 216 322 126 82 chr12 22184878 22185220 -122097269 - L2 LINE L2 -52 3220 2864 205 221 15 59 chr12 22185967 22186035 -122096454 + MIR3 SINE MIR 120 184 -24 2018 117 16 10 chr12 22186885 22187194 -122095295 - AluSx SINE Alu -1 311 1 221 298 175 9 chr12 22187563 22187677 -122094812 - L2 LINE L2 -1 3271 3139 183 303 49 56 chr12 22188168 22188242 -122094247 - L2 LINE L2 -1317 1997 1924 770 181 0 23 chr12 22188242 22188375 -122094114 + FLAM_C SINE Alu 2 131 -2 183 303 49 56 chr12 22188375 22188462 -122094027 - L2 LINE L2 -1390 1924 1837 484 98 31 0 chr12 22189300 22189387 -122093102 - L1MA8 LINE L1 -23 6289 6186 2056 160 33 13 chr12 22189387 22189781 -122092708 - L1 LINE L1 -1961 4185 3784 2274 86 0 3 chr12 22189788 22190078 -122092411 - AluY SINE Alu -22 289 1 1127 280 115 20 chr12 22190078 22190992 -122091497 - L1M2c LINE L1 -4557 2541 1534 380 368 6 23 chr12 22191660 22191834 -122090655 - L1M2c LINE L1 -5968 1130 960 253 296 59 7 chr12 22192258 22192410 -122090079 - Charlie7 DNA MER1_type -1 2611 2452 202 267 199 30 chr12 22192865 22192996 -122089493 + MIR SINE MIR 46 198 -64 189 302 0 38 chr12 22193056 22193109 -122089380 - L2 LINE L2 -19 3294 3244 301 277 75 0 chr12 22193295 22193389 -122089100 - MIR SINE MIR -2 260 160 361 117 0 17 chr12 22193389 22193449 -122089040 + Charlie1 DNA MER1_type 2700 2758 -3 376 307 187 4 chr12 22193451 22193692 -122088797 - L2 LINE L2 -2032 1282 998 255 386 111 36 chr12 22194447 22194861 -122087628 - L2 LINE L2 -16 3256 2812 2375 61 3 7 chr12 22194898 22195195 -122087294 + AluY SINE Alu 1 296 -15 1770 151 0 14 chr12 22195397 22195675 -122086814 + AluJo SINE Alu 14 287 -25 23 0 0 0 chr12 22195677 22195700 -122086789 + AT_rich Low_complexity Low_complexity 1 23 0 2272 65 21 10 chr12 22196461 22196751 -122085738 + AluY SINE Alu 2 294 -17 23 0 0 0 chr12 22197616 22197639 -122084850 + AT_rich Low_complexity Low_complexity 1 23 0 2391 63 3 38 chr12 22198605 22198923 -122083566 - AluY SINE Alu -4 307 1 502 284 56 35 chr12 22199562 22199759 -122082730 - MIR SINE MIR -42 220 20 853 28 9 0 chr12 22200008 22200115 -122082374 - L1PA5 LINE L1 -11 6143 6036 665 242 135 6 chr12 22200253 22200431 -122082058 - MIR SINE MIR -54 208 8 33 66 0 0 chr12 22200915 22200976 -122081513 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr12 22201121 22201144 -122081345 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr12 22201200 22201243 -122081246 + AT_rich Low_complexity Low_complexity 1 43 0 245 194 48 48 chr12 22201301 22201363 -122081126 + Charlie8 DNA MER1_type 1356 1417 -1000 23 54 0 0 chr12 22201935 22201972 -122080517 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr12 22204119 22204141 -122078348 + AT_rich Low_complexity Low_complexity 1 22 0 200 86 29 0 chr12 22204199 22204234 -122078255 + (TA)n Simple_repeat Simple_repeat 1 36 0 27 0 0 0 chr12 22204446 22204473 -122078016 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 22204717 22204739 -122077750 + AT_rich Low_complexity Low_complexity 1 22 0 14097 127 57 10 chr12 22205101 22206267 -122076222 - Tigger1 DNA MER2_type 0 2418 1308 2169 126 105 10 chr12 22206267 22206656 -122075833 - MSTA LTR MaLR 0 428 3 14097 127 57 10 chr12 22206656 22207788 -122074701 - Tigger1 DNA MER2_type -1110 1308 12 3983 204 64 11 chr12 22207799 22208583 -122073906 + MER21B LTR ERV1 38 862 -1 248 314 12 23 chr12 22209021 22209107 -122073382 - L2 LINE L2 -5 3308 3224 2113 93 4 7 chr12 22209152 22209476 -122073013 - AluSx SINE Alu 0 327 5 191 355 45 18 chr12 22210180 22210290 -122072199 - MIR SINE MIR -78 130 18 22 0 0 0 chr12 22211744 22211766 -122070723 + AT_rich Low_complexity Low_complexity 1 22 0 717 186 137 0 chr12 22211877 22212060 -122070429 + MER3 DNA MER1_type 1 208 -1 2220 110 0 10 chr12 22212164 22212465 -122070024 + AluSq SINE Alu 3 300 -13 304 349 46 0 chr12 22213320 22213429 -122069060 - MIR SINE MIR -48 214 101 12064 31 31 0 chr12 22213482 22215645 -122066844 - L1PA5 LINE L1 0 6154 3918 1534 95 40 5 chr12 22218022 22218244 -122064245 - MER30 DNA MER1_type 0 230 1 1016 74 74 7 chr12 22218404 22218553 -122063936 - MER30 DNA MER1_type -71 159 1 21 36 0 0 chr12 22219674 22219702 -122062787 + AT_rich Low_complexity Low_complexity 1 28 0 1128 162 118 90 chr12 22221051 22221397 -122061092 - MER41B LTR ERV1 -20 615 260 373 224 35 24 chr12 22221894 22221979 -122060510 + MER7A DNA MER2_type 1 84 -262 278 136 45 0 chr12 22221976 22222020 -122060469 - Alu SINE Alu -11 290 245 * 1547 130 88 4 chr12 22222008 22222269 -122060220 + MER7A DNA MER2_type 66 346 0 498 174 68 45 chr12 22222482 22222614 -122059875 - MLT1D LTR MaLR 0 505 371 639 151 38 88 chr12 22222620 22222779 -122059710 - MLT1E2 LTR MaLR -475 151 1 408 273 30 36 chr12 22224937 22225102 -122057387 + MER103 DNA DNA 3 166 0 376 281 151 50 chr12 22227222 22227421 -122055068 - L2 LINE L2 -189 3083 2865 2250 247 81 5 chr12 22227423 22228006 -122054483 + MLT2E LTR ERVL 1 627 -1 2375 96 0 0 chr12 22228106 22228408 -122054081 - AluSx SINE Alu -10 302 1 376 279 60 60 chr12 22228674 22228857 -122053632 - L2 LINE L2 -3 3310 3128 768 304 109 15 chr12 22228867 22229262 -122053227 - L2 LINE L2 -424 2890 2459 345 225 121 47 chr12 22229285 22229591 -122052898 + LTR50 LTR ERVL 27 410 -385 804 214 134 0 chr12 22229595 22229833 -122052656 + LTR50 LTR ERVL 524 793 -2 29 28 0 0 chr12 22230365 22230401 -122052088 + AT_rich Low_complexity Low_complexity 1 36 0 395 216 0 0 chr12 22231950 22232024 -122050465 + Tigger4(Zombi) DNA MER2_type 2658 2731 0 23 33 0 0 chr12 22232699 22232729 -122049760 + AT_rich Low_complexity Low_complexity 1 30 0 1562 190 103 150 chr12 22233310 22234038 -122048451 + L1MC5 LINE L1 6728 7376 -585 387 91 30 0 chr12 22234038 22234104 -122048385 + L1PA10 LINE L1 6101 6168 0 1562 190 103 150 chr12 22234104 22234609 -122047880 + L1MC5 LINE L1 7376 7903 -58 1646 190 34 0 chr12 22234801 22235127 -122047362 - MER58B DNA MER1_type -4 337 1 2248 115 3 10 chr12 22235414 22235728 -122046761 - AluSx SINE Alu 0 312 1 1092 255 37 12 chr12 22236432 22236751 -122045738 + MLT1A1 LTR MaLR 33 365 0 1244 327 88 17 chr12 22236766 22237515 -122044974 + L2 LINE L2 1746 2547 -767 227 306 28 0 chr12 22237519 22237591 -122044898 + L2 LINE L2 2681 2754 -560 302 319 92 21 chr12 22237698 22237839 -122044650 + L2 LINE L2 2914 3064 -208 884 202 22 0 chr12 22237946 22238129 -122044360 + MER58A DNA MER1_type 37 223 -1 387 236 260 0 chr12 22238137 22238264 -122044225 + MER5A DNA MER1_type 24 183 -6 374 293 111 10 chr12 22238273 22238372 -122044117 + L2 LINE L2 3150 3258 -14 523 109 11 0 chr12 22238457 22238549 -122043940 + L1MA5 LINE L1 6064 6156 -144 989 131 12 0 chr12 22238628 22238788 -122043701 + L1PA16 LINE L1 6000 6161 -5 27 62 0 0 chr12 22238853 22238901 -122043588 + AT_rich Low_complexity Low_complexity 1 48 0 1697 176 0 30 chr12 22239323 22239624 -122042865 + AluJo SINE Alu 6 297 -15 478 300 74 16 chr12 22240583 22240826 -122041663 + MIR SINE MIR 3 259 -3 1166 261 133 24 chr12 22241319 22241866 -122040623 + MLT2F LTR ERVL 57 663 0 307 316 38 15 chr12 22241879 22242012 -122040477 + ERVL-F LTR ERVL 24 159 -5605 658 317 33 7 chr12 22242193 22242464 -122040025 + ERVL-F LTR ERVL 403 680 -5084 6234 276 86 62 chr12 22242520 22242684 -122039805 + ERVL-F LTR ERVL 834 993 -4771 2417 165 21 5 chr12 22242684 22243103 -122039386 - MSTB LTR MaLR 0 426 1 6234 276 86 62 chr12 22243103 22244070 -122038419 + ERVL-F LTR ERVL 993 1936 -3828 2488 66 7 0 chr12 22244070 22244375 -122038114 + AluY SINE Alu 1 307 -4 6234 276 86 62 chr12 22244375 22247668 -122034821 + ERVL-F LTR ERVL 1936 5403 -361 274 231 104 104 chr12 22247761 22247895 -122034594 + ERVL-F LTR ERVL 5568 5701 -63 1394 192 31 3 chr12 22247909 22248200 -122034289 + L1MB4 LINE L1 5882 6180 0 192 290 70 80 chr12 22248723 22248823 -122033666 + MIR SINE MIR 55 153 -55 250 286 89 18 chr12 22249414 22249526 -122032963 + L2 LINE L2 3143 3262 -10 239 295 139 36 chr12 22251987 22252153 -122030336 - MIR SINE MIR -52 210 28 24 32 0 0 chr12 22252922 22252953 -122029536 + AT_rich Low_complexity Low_complexity 1 31 0 551 300 75 25 chr12 22253723 22253963 -122028526 + MIR SINE MIR 4 255 -7 273 306 0 0 chr12 22254798 22254870 -122027619 + L2 LINE L2 3189 3260 -12 25 31 0 0 chr12 22255737 22255769 -122026720 + AT_rich Low_complexity Low_complexity 1 32 0 233 265 0 0 chr12 22256266 22256315 -122026174 + (TA)n Simple_repeat Simple_repeat 2 50 0 342 67 0 0 chr12 22257633 22257678 -122024811 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 2411 91 7 0 chr12 22257872 22258180 -122024309 + AluSx SINE Alu 1 310 -2 199 328 66 62 chr12 22258217 22258473 -122024016 - L2 LINE L2 -2 3311 3055 4137 176 45 16 chr12 22259656 22260473 -122022016 - MER21B LTR ERV1 -21 842 2 1873 139 33 26 chr12 22261546 22261848 -122020641 + AluJb SINE Alu 1 304 -8 207 357 45 0 chr12 22261870 22261982 -122020507 + MIR SINE MIR 32 148 -60 587 129 0 0 chr12 22262283 22262368 -122020121 - AluJ/FLAM SINE Alu -227 85 1 731 272 6 0 chr12 22262406 22262579 -122019910 + FRAM SINE Alu 1 174 -2 341 274 44 35 chr12 22262594 22262707 -122019782 + L2 LINE L2 3185 3298 -15 25 31 0 0 chr12 22263826 22263858 -122018631 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 22264080 22264110 -122018379 + AT_rich Low_complexity Low_complexity 1 30 0 218 358 25 25 chr12 22267189 22267270 -122015219 - L2 LINE L2 -6 3266 3186 216 208 62 0 chr12 22268388 22268436 -122014053 + L2 LINE L2 3221 3271 -1 2188 109 26 0 chr12 22268482 22268786 -122013703 - AluSq SINE Alu -1 312 1 627 215 171 25 chr12 22271666 22271824 -122010665 + MER5A DNA MER1_type 9 189 0 1635 181 51 25 chr12 22271842 22272196 -122010293 + MLT1A1 LTR MaLR 1 363 -2 315 250 39 0 chr12 22272308 22272412 -122010077 + L2 LINE L2 1564 1671 -1643 252 141 0 90 chr12 22272427 22272505 -122009984 - LTR67 LTR ERVL -14 543 473 298 286 0 0 chr12 22272654 22272731 -122009758 - LTR67 LTR ERVL -380 177 101 562 211 0 0 chr12 22272904 22273008 -122009481 + FLAM_C SINE Alu 18 121 -22 739 309 129 67 chr12 22273051 22273860 -122008629 + L2 LINE L2 1750 2608 -706 228 373 31 12 chr12 22273872 22274033 -122008456 + L2 LINE L2 2805 2968 -346 1271 195 39 12 chr12 22274187 22274444 -122008045 + Tigger7 DNA MER2_type 1 264 -469 328 177 25 25 chr12 22274445 22274524 -122007965 + Tigger7 DNA MER2_type 2390 2468 -19 397 306 25 38 chr12 22274562 22274722 -122007767 + L2 LINE L2 3156 3313 0 306 293 159 71 chr12 22276407 22276898 -122005591 - L1M2 LINE L1 -5847 1002 469 348 279 18 27 chr12 22277927 22278038 -122004451 - MER5A DNA MER1_type -56 133 24 209 332 146 32 chr12 22278031 22278251 -122004238 - L2 LINE L2 -1055 2259 2015 * 21 36 0 0 chr12 22278832 22278860 -122003629 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr12 22279064 22279089 -122003400 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 198 191 0 0 chr12 22280891 22280933 -122001556 + (CA)n Simple_repeat Simple_repeat 2 43 0 196 298 0 18 chr12 22282264 22282321 -122000168 - MIR SINE MIR -66 196 141 2027 125 15 21 chr12 22282515 22282843 -121999646 - MLT1A1 LTR MaLR 0 365 40 407 183 14 0 chr12 22282843 22282914 -121999575 + Tigger5 DNA MER2_type 1 72 -2251 275 246 0 0 chr12 22282919 22282976 -121999513 - Tigger5 DNA MER2_type -6 2317 2261 1854 171 3 19 chr12 22282984 22283415 -121999074 + AluSx SINE Alu 1 426 0 274 182 0 0 chr12 22283421 22283465 -121999024 + Tigger5 DNA MER2_type 2279 2322 -1 286 95 0 0 chr12 22283465 22283507 -121998982 - MLT1A1 LTR MaLR -323 42 1 211 259 0 52 chr12 22283640 22283698 -121998791 - L2 LINE L2 -11 3261 3207 536 296 100 12 chr12 22286108 22286348 -121996141 - MIR SINE MIR 0 262 2 211 250 0 0 chr12 22286832 22286876 -121995613 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 360 368 32 7 chr12 22287589 22287744 -121994745 - L3 LINE CR1 -26 1551 1393 195 232 74 74 chr12 22288459 22288554 -121993935 + MIR SINE MIR 87 181 -81 290 274 36 0 chr12 22289608 22289692 -121992797 + MER5B DNA MER1_type 88 174 -4 1986 140 16 3 chr12 22289745 22290053 -121992436 + AluJb SINE Alu 1 312 0 222 118 0 0 chr12 22290206 22290240 -121992249 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2133 145 3 3 chr12 22290453 22290797 -121991692 - L1PA16 LINE L1 -2 6164 5821 1967 128 7 14 chr12 22290808 22291105 -121991384 - AluSx SINE Alu -17 295 1 927 238 21 21 chr12 22291445 22291685 -121990804 - MIR SINE MIR -21 241 2 2359 45 10 16 chr12 22292330 22292638 -121989851 - L1PA8 LINE L1 -2 6170 5865 2148 130 3 0 chr12 22293916 22294215 -121988274 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr12 22294449 22294471 -121988018 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 27 73 0 0 chr12 22294650 22294705 -121987784 + AT_rich Low_complexity Low_complexity 1 55 0 699 265 93 0 chr12 22295733 22295937 -121986552 + L2 LINE L2 2579 2801 -513 1346 225 52 34 chr12 22295937 22296075 -121986414 + MER63C DNA MER1_type 1 135 -926 3707 144 31 0 chr12 22296075 22296694 -121985795 + L1MC1 LINE L1 5694 6331 -2 1346 225 52 34 chr12 22296694 22297405 -121985084 + MER63C DNA MER1_type 135 926 -5 443 77 15 0 chr12 22297434 22297499 -121984990 + L1MC1 LINE L1 6267 6332 -1 259 211 0 0 chr12 22297504 22297561 -121984928 + MER63 DNA MER1_type 137 193 -868 872 197 14 28 chr12 22297649 22297862 -121984627 - MER63 DNA MER1_type -297 763 554 1714 252 36 4 chr12 22298149 22299066 -121983423 - L1MC4 LINE L1 -221 7821 6712 360 0 0 0 chr12 22299070 22299110 -121983379 + (CA)n Simple_repeat Simple_repeat 2 41 0 2075 115 3 3 chr12 22299416 22299704 -121982785 + AluSx SINE Alu 1 288 -24 1201 26 0 0 chr12 22299842 22299994 -121982495 - L1PA3 LINE L1 -92 6063 5912 190 351 0 0 chr12 22300823 22300897 -121981592 + MIR SINE MIR 168 241 -21 236 397 11 39 chr12 22301475 22301654 -121980835 + L2 LINE L2 2909 3082 -190 484 248 124 51 chr12 22301738 22301800 -121980689 - MIR SINE MIR -6 256 200 962 182 0 0 chr12 22301800 22301954 -121980535 - FRAM SINE Alu -12 154 1 484 248 124 51 chr12 22301954 22302134 -121980355 - MIR SINE MIR -62 200 5 188 67 33 0 chr12 22302526 22302556 -121979933 + (CA)n Simple_repeat Simple_repeat 2 32 0 848 158 6 0 chr12 22302846 22303017 -121979472 + GA-rich Low_complexity Low_complexity 4 175 0 650 276 43 5 chr12 22303022 22303232 -121979257 + LTR16B LTR ERVL 240 457 -7 2062 181 76 9 chr12 22304208 22304640 -121977849 + LOR1b LTR ERV1 1 461 0 1774 155 33 13 chr12 22304908 22305211 -121977278 - AluJb SINE Alu -3 309 1 306 372 50 21 chr12 22305295 22305537 -121976952 + L2 LINE L2 2261 2509 -805 292 312 43 32 chr12 22305966 22306059 -121976430 + L2 LINE L2 3159 3252 -20 2276 96 0 3 chr12 22306358 22306650 -121975839 + AluSg SINE Alu 1 291 -19 3693 141 30 64 chr12 22306650 22307452 -121975037 + Ricksha_b DNA DNA 293 1067 -187 790 152 89 11 chr12 22307510 22307701 -121974788 + Ricksha_b DNA DNA 1433 1638 -8 26 50 0 0 chr12 22309589 22309629 -121972860 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr12 22310000 22310038 -121972451 + AT_rich Low_complexity Low_complexity 1 38 0 241 321 9 0 chr12 22310740 22310849 -121971640 + L1MC5 LINE L1 7784 7893 -68 29 28 0 0 chr12 22311420 22311456 -121971033 + AT_rich Low_complexity Low_complexity 1 36 0 317 363 117 0 chr12 22311842 22312013 -121970476 - MIR SINE MIR -20 242 52 189 0 0 0 chr12 22313458 22313479 -121969010 + (A)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr12 22314302 22314322 -121968167 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr12 22315066 22315088 -121967401 + AT_rich Low_complexity Low_complexity 1 22 0 652 285 92 4 chr12 22315240 22315468 -121967021 - MIR SINE MIR -12 250 3 1679 106 0 0 chr12 22315833 22316050 -121966439 + AluSg/x SINE Alu 85 301 -11 21 36 0 0 chr12 22316218 22316246 -121966243 + GC_rich Low_complexity Low_complexity 1 28 0 303 246 30 52 chr12 22316339 22316473 -121966016 + C-rich Low_complexity Low_complexity 2 132 0 2381 88 0 0 chr12 22317029 22317326 -121965163 - AluSg1 SINE Alu -12 297 1 210 365 157 18 chr12 22317707 22318216 -121964273 + L2 LINE L2 1589 2168 -1146 597 284 62 58 chr12 22318252 22318509 -121963980 + MIR SINE MIR 5 262 0 21 36 0 0 chr12 22319137 22319165 -121963324 + AT_rich Low_complexity Low_complexity 1 28 0 192 271 0 21 chr12 22320159 22320207 -121962282 - L2 LINE L2 -2 3270 3224 481 278 96 37 chr12 22321320 22321507 -121960982 - MIR SINE MIR -28 234 37 272 369 56 34 chr12 22322169 22322402 -121960087 - L2 LINE L2 -391 2923 2686 * 390 287 23 8 chr12 22322397 22322526 -121959963 + MIR SINE MIR 132 262 0 376 256 186 0 chr12 22322789 22322988 -121959501 - L1MCc LINE L1 -4900 1523 1288 2166 110 0 3 chr12 22323204 22323513 -121958976 + AluSc SINE Alu 1 308 -1 264 333 19 9 chr12 22324778 22324886 -121957603 - MIR3 SINE MIR -3 205 97 23 33 0 0 chr12 22326165 22326195 -121956294 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr12 22326247 22326282 -121956207 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 22326594 22326615 -121955874 + AT_rich Low_complexity Low_complexity 1 21 0 301 248 16 27 chr12 22326988 22327079 -121955410 - MER5A DNA MER1_type 0 189 92 21 0 0 0 chr12 22328481 22328502 -121953987 + AT_rich Low_complexity Low_complexity 1 21 0 182 138 0 0 chr12 22328816 22328845 -121953644 - L2 LINE L2 -16 3297 3269 214 354 133 54 chr12 22329437 22330704 -121951785 + L2 LINE L2 665 2032 -1282 1741 204 112 7 chr12 22330706 22330866 -121951623 - MLT1D LTR MaLR -9 496 354 2217 123 0 22 chr12 22330866 22331183 -121951306 - AluSq SINE Alu -3 310 1 1741 204 112 7 chr12 22331183 22331449 -121951040 - MLT1D LTR MaLR -151 354 25 257 312 199 16 chr12 22331593 22331779 -121950710 + L2 LINE L2 2197 2416 -898 1122 217 112 43 chr12 22332704 22333124 -121949365 + LTR2 LTR ERV1 1 449 0 194 329 13 0 chr12 22333339 22333418 -121949071 + MIR SINE MIR 92 171 -91 745 229 50 0 chr12 22333454 22333694 -121948795 + L1PB4 LINE L1 5073 5324 -822 2743 113 12 0 chr12 22333696 22334103 -121948386 + MLT2A2 LTR ERVL 1 412 -41 205 178 0 0 chr12 22334104 22334149 -121948340 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 257 115 77 0 chr12 22334152 22334204 -121948285 + MLT2A2 LTR ERVL 465 520 0 2611 71 0 0 chr12 22334204 22334557 -121947932 + HERVL-A2 LTR ERVL 1 353 -5301 * 19901 76 23 7 chr12 22334551 22337531 -121944958 + HERVL-A2 LTR ERVL 2629 5654 0 3326 86 11 11 chr12 22337531 22337943 -121944546 + MLT2A2 LTR ERVL 1 415 -38 405 0 0 0 chr12 22337943 22337988 -121944501 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 3326 86 11 11 chr12 22337988 22338028 -121944461 + MLT2A2 LTR ERVL 414 453 0 4640 153 6 25 chr12 22338028 22338849 -121943640 + L1PB4 LINE L1 5322 6128 -28 2616 113 11 3 chr12 22338849 22339221 -121943268 + THE1C LTR MaLR 1 375 0 4640 153 6 25 chr12 22339221 22339246 -121943243 + L1PB4 LINE L1 6128 6152 -4 23 0 0 0 chr12 22339246 22339269 -121943220 + AT_rich Low_complexity Low_complexity 1 23 0 14225 193 28 22 chr12 22340969 22346598 -121935891 + L1M2 LINE L1 2 5660 -1188 451 131 36 48 chr12 22346602 22346686 -121935803 + MSTB LTR MaLR 1 83 -343 1308 271 8 0 chr12 22346686 22347051 -121935438 + L1MA4A LINE L1 22 389 -6474 2368 166 45 4 chr12 22347083 22347593 -121934896 + L1MA4A LINE L1 2846 3477 -3385 4408 215 6 1 chr12 22347595 22348536 -121933953 + L1MA4A LINE L1 4173 5118 -1744 6031 145 28 9 chr12 22348548 22349872 -121932617 + L1MA4A LINE L1 5674 7016 -3 362 106 0 15 chr12 22350571 22350637 -121931852 + (TC)n Simple_repeat Simple_repeat 2 66 0 191 167 24 0 chr12 22350636 22350678 -121931811 + (TA)n Simple_repeat Simple_repeat 1 43 0 * 620 285 106 10 chr12 22351379 22351586 -121930903 - MIR SINE MIR -3 259 33 1522 198 3 29 chr12 22351638 22351951 -121930538 - AluJo SINE Alu -7 305 1 414 309 161 38 chr12 22352927 22353380 -121929109 + L2 LINE L2 2804 3312 -1 21 0 0 0 chr12 22353414 22353435 -121929054 + AT_rich Low_complexity Low_complexity 1 21 0 287 292 195 0 chr12 22353814 22353927 -121928562 + MIR3 SINE MIR 42 176 -32 287 238 0 16 chr12 22354211 22354274 -121928215 - L2 LINE L2 -4 3309 3248 200 231 319 0 chr12 22354287 22354378 -121928111 + L2 LINE L2 3188 3307 -6 21 71 0 0 chr12 22355670 22355712 -121926777 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr12 22355731 22355752 -121926737 + AT_rich Low_complexity Low_complexity 1 21 0 548 213 90 0 chr12 22357438 22357560 -121924929 + FLAM_A SINE Alu 1 133 0 25 31 0 0 chr12 22357560 22357592 -121924897 + AT_rich Low_complexity Low_complexity 1 32 0 211 283 163 11 chr12 22358063 22358155 -121924334 + MIR SINE MIR 71 177 -31 357 24 0 0 chr12 22358649 22358691 -121923798 + (TA)n Simple_repeat Simple_repeat 1 42 0 692 279 154 36 chr12 22359532 22360037 -121922452 - L2 LINE L2 -4 3309 2726 197 439 75 47 chr12 22360387 22360747 -121921742 - L2 LINE L2 -89 3183 2814 21 57 0 0 chr12 22360796 22360831 -121921658 + AT_rich Low_complexity Low_complexity 1 35 0 182 379 0 0 chr12 22361007 22361065 -121921424 - L2 LINE L2 -601 2713 2656 377 294 149 49 chr12 22361376 22361726 -121920763 - L2 LINE L2 -678 2636 2252 349 211 166 51 chr12 22361841 22362016 -121920473 + Charlie8 DNA MER1_type 27 221 -2196 306 56 0 0 chr12 22362399 22362435 -121920054 + U2 snRNA snRNA 1 36 -152 28 48 0 0 chr12 22362620 22362662 -121919827 + AT_rich Low_complexity Low_complexity 1 42 0 2796 10 0 3 chr12 22362801 22363110 -121919379 + AluYb8 SINE Alu 1 308 -10 339 222 67 0 chr12 22363162 22363252 -121919237 + MIR SINE MIR 133 228 -34 2177 116 3 0 chr12 22363678 22364046 -121918443 + AluSp SINE Alu 1 369 0 438 309 110 56 chr12 22367400 22367576 -121914913 - L1M4 LINE L1 -1579 4567 4402 1662 164 0 48 chr12 22367576 22367887 -121914602 - AluJo SINE Alu -16 296 1 438 309 110 56 chr12 22367887 22368029 -121914460 - L1M4 LINE L1 -1744 4402 4269 2140 124 0 0 chr12 22368029 22368328 -121914161 - AluSg SINE Alu -11 299 1 438 309 110 56 chr12 22368328 22368454 -121914035 - L1M4 LINE L1 -1877 4269 4098 645 196 0 33 chr12 22368664 22368848 -121913641 + CT-rich Low_complexity Low_complexity 2 179 0 309 305 94 8 chr12 22368851 22368979 -121913510 + L2 LINE L2 3134 3272 0 2179 107 3 13 chr12 22369130 22369438 -121913051 - AluSq SINE Alu -8 305 1 931 269 29 0 chr12 22369705 22369943 -121912546 - MIR SINE MIR -8 254 10 747 298 160 20 chr12 22369969 22370436 -121912053 + L2 LINE L2 2511 3060 -212 2431 38 21 0 chr12 22371127 22371414 -121911075 + AluY SINE Alu 1 293 -18 218 299 63 116 chr12 22371697 22371981 -121910508 + L2 LINE L2 2990 3258 -14 1882 136 39 0 chr12 22372438 22372724 -121909765 - AluJb SINE Alu -15 297 1 38613 81 7 14 chr12 22372764 22374015 -121908474 - L1PA6 LINE L1 -5 6149 4892 2883 3 0 0 chr12 22374015 22374324 -121908165 - AluYa5 SINE Alu -2 309 1 38613 81 7 14 chr12 22374324 22379232 -121903257 - L1PA6 LINE L1 -1262 4892 11 194 250 21 21 chr12 22379372 22379420 -121903069 - L2 LINE L2 -10 3262 3215 21 0 0 0 chr12 22379474 22379495 -121902994 + AT_rich Low_complexity Low_complexity 1 21 0 1155 290 79 16 chr12 22380942 22381511 -121900978 - L1MC4a LINE L1 -1908 5900 5296 1982 140 3 13 chr12 22381538 22381838 -121900651 + AluSx SINE Alu 1 297 -15 1625 172 18 4 chr12 22381842 22382115 -121900374 + AluJo SINE Alu 1 277 -35 21 57 0 0 chr12 22382121 22382156 -121900333 + AT_rich Low_complexity Low_complexity 1 35 0 2370 165 7 39 chr12 22382838 22383275 -121899214 - MSTB LTR MaLR 0 426 4 206 379 74 0 chr12 22383297 22383392 -121899097 + L2 LINE L2 3164 3265 -7 189 245 38 38 chr12 22383723 22383776 -121898713 + MIR SINE MIR 21 73 -135 411 21 0 0 chr12 22383787 22383835 -121898654 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 685 318 107 39 chr12 22383845 22384329 -121898160 + MLT1K LTR MaLR 26 542 -46 581 184 118 66 chr12 22384764 22384976 -121897513 - MLT1J LTR MaLR 0 511 289 1961 110 18 0 chr12 22385489 22385761 -121896728 - AluSc SINE Alu -31 278 2 653 237 163 37 chr12 22385762 22385888 -121896601 + MIR SINE MIR 20 129 -133 805 192 61 42 chr12 22385888 22386102 -121896387 + MER20 DNA MER1_type 1 218 -1 653 237 163 37 chr12 22386102 22386190 -121896299 + MIR SINE MIR 129 261 -1 594 265 61 43 chr12 22386184 22386414 -121896075 - MIR SINE MIR -27 235 2 * 663 192 0 0 chr12 22387294 22387423 -121895066 + FRAM SINE Alu 39 150 -26 26 64 0 0 chr12 22388135 22388182 -121894307 + AT_rich Low_complexity Low_complexity 1 47 0 331 251 316 18 chr12 22388766 22388937 -121893552 + MIR SINE MIR 34 255 -7 316 368 44 28 chr12 22389204 22389386 -121893103 + MIR3 SINE MIR 1 185 -23 368 329 33 13 chr12 22390863 22391015 -121891474 + MIR3 SINE MIR 23 177 -31 418 235 178 56 chr12 22391091 22391304 -121891185 - MIR SINE MIR -8 254 16 48 67 0 0 chr12 22391597 22391687 -121890802 + AT_rich Low_complexity Low_complexity 1 90 0 37 62 0 0 chr12 22391789 22391854 -121890635 + AT_rich Low_complexity Low_complexity 1 65 0 21 71 0 0 chr12 22391994 22392036 -121890453 + AT_rich Low_complexity Low_complexity 1 42 0 3769 229 65 19 chr12 22392146 22393332 -121889157 + L1MC4 LINE L1 6708 7947 -95 197 311 0 16 chr12 22393971 22394032 -121888457 + MIR3 SINE MIR 148 207 -1 231 61 0 0 chr12 22395948 22395981 -121886508 + (A)n Simple_repeat Simple_repeat 1 33 0 378 297 21 48 chr12 22396287 22396432 -121886057 + MIR SINE MIR 122 262 0 6395 117 11 32 chr12 22396465 22397455 -121885034 + LTR5 LTR ERVK 1 969 0 1893 100 0 57 chr12 22399213 22399493 -121882996 - AluSx SINE Alu -21 291 28 234 258 15 0 chr12 22399565 22399631 -121882858 + MIR3 SINE MIR 138 204 -4 885 211 84 40 chr12 22399782 22400009 -121882480 + MER8 DNA MER2_type 1 237 -2 2102 136 0 0 chr12 22401333 22401628 -121880861 + AluSx SINE Alu 1 295 -17 414 0 0 0 chr12 22401629 22401675 -121880814 + (CA)n Simple_repeat Simple_repeat 2 47 0 560 324 83 6 chr12 22402335 22402647 -121879842 - L2 LINE L2 -87 3226 2891 266 290 112 37 chr12 22402822 22402929 -121879560 - L2 LINE L2 -557 2757 2643 212 171 0 0 chr12 22403086 22403121 -121879368 + MIR SINE MIR 61 95 -167 290 328 94 0 chr12 22403819 22403949 -121878540 + MIR SINE MIR 37 176 -74 321 213 32 11 chr12 22404748 22404842 -121877647 + L1MC4 LINE L1 7745 7840 -202 741 108 39 46 chr12 22404886 22405016 -121877473 + MER1B DNA MER1_type 211 339 0 244 114 0 0 chr12 22405038 22405073 -121877416 + L1MC4 LINE L1 7857 7891 -151 259 289 0 10 chr12 22405078 22405182 -121877307 + (TA)n Simple_repeat Simple_repeat 2 104 0 306 282 14 28 chr12 22405183 22405325 -121877164 + L1MC4 LINE L1 7902 8041 -1 * 1502 254 69 26 chr12 22405320 22405969 -121876520 + L1MC4 LINE L1 7225 7901 -141 2183 123 7 0 chr12 22406364 22406666 -121875823 + AluSc SINE Alu 1 304 -5 2557 36 0 3 chr12 22409681 22409988 -121872501 - AluY SINE Alu -5 306 1 402 231 169 39 chr12 22411506 22411636 -121870853 - L2 LINE L2 -5 3308 3162 4060 136 32 33 chr12 22412871 22414252 -121868237 + pTR5 LTR ERV1 743 2438 0 2087 102 0 46 chr12 22414806 22414931 -121867558 + AluY SINE Alu 21 150 -161 2234 116 0 0 chr12 22414931 22415234 -121867255 + AluSg SINE Alu 1 303 -7 2087 102 0 46 chr12 22415234 22415412 -121867077 + AluY SINE Alu 150 310 -1 660 196 14 14 chr12 22415803 22415941 -121866548 - MIR SINE MIR -55 207 70 285 29 0 0 chr12 22415942 22415976 -121866513 + (TC)n Simple_repeat Simple_repeat 2 35 0 2069 117 0 44 chr12 22415985 22416301 -121866188 - AluSx SINE Alu -10 302 1 365 310 108 43 chr12 22416302 22416534 -121865955 - L1MC4a LINE L1 -1953 5855 5609 2262 70 9 70 chr12 22417018 22417346 -121865143 + AluSg SINE Alu 1 308 -2 2734 123 9 5 chr12 22417473 22417905 -121864584 - MER57B LTR ERV1 0 434 1 596 266 23 5 chr12 22417932 22418146 -121864343 - L1MD3 LINE L1 -1 7994 7777 21 36 0 0 chr12 22418226 22418254 -121864235 + AT_rich Low_complexity Low_complexity 1 28 0 726 186 0 8 chr12 22418802 22418931 -121863558 - FLAM_C SINE Alu -5 128 1 202 244 44 0 chr12 22419001 22419046 -121863443 - L2 LINE L2 -16 3297 3251 765 292 17 38 chr12 22419667 22419907 -121862582 - MIR SINE MIR -26 236 2 814 122 0 81 chr12 22420053 22420225 -121862264 - MER50 LTR ERV1 -80 654 497 649 127 102 0 chr12 22420270 22420388 -121862101 + Ricksha_b DNA DNA 1 130 -1124 3990 134 29 67 chr12 22420402 22420455 -121862034 + Ricksha_b DNA DNA 245 298 -2556 2270 99 0 3 chr12 22420455 22420747 -121861742 + AluSg SINE Alu 1 291 -19 3990 134 29 67 chr12 22420747 22421548 -121860941 + Ricksha_b DNA DNA 298 1067 -187 790 152 89 11 chr12 22421606 22421797 -121860692 + Ricksha_b DNA DNA 1441 1646 -8 1005 255 156 12 chr12 22422794 22423300 -121859189 - L1M4 LINE L1 -1974 4172 3594 346 349 35 15 chr12 22423300 22423498 -121858991 - L1MEc LINE L1 -5620 776 575 371 327 66 7 chr12 22423601 22423873 -121858616 - L1MEc LINE L1 -6017 379 92 379 316 8 8 chr12 22424137 22424254 -121858235 - MER5A DNA MER1_type -72 117 1 218 362 64 0 chr12 22424421 22424515 -121857974 + MIR SINE MIR 38 137 -125 4007 103 173 127 chr12 22424760 22425630 -121856859 - pTR5 LTR ERV1 0 2438 1609 315 0 0 0 chr12 22425630 22425665 -121856824 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 4007 103 173 127 chr12 22425665 22426143 -121856346 - pTR5 LTR ERV1 -829 1609 741 3558 166 104 18 chr12 22426265 22427002 -121855487 + MER21B LTR ERV1 1 801 -62 284 176 48 168 chr12 22427002 22427127 -121855362 + MER21B LTR ERV1 754 863 0 204 125 0 0 chr12 22427215 22427247 -121855242 + (TCC)n Simple_repeat Simple_repeat 3 34 0 205 368 11 11 chr12 22427903 22427998 -121854491 + L2 LINE L2 2253 2347 -967 337 252 159 0 chr12 22428546 22428653 -121853836 - L2 LINE L2 -2 3270 3147 3055 109 29 78 chr12 22428659 22429285 -121853204 + LTR1 LTR ERV1 1 595 -190 416 151 0 14 chr12 22429278 22429351 -121853138 + LTR1 LTR ERV1 714 785 0 * 372 152 0 0 chr12 22429895 22429961 -121852528 + CT-rich Low_complexity Low_complexity 1 66 0 2507 30 3 13 chr12 22431696 22431997 -121850492 + AluY SINE Alu 1 298 -13 328 330 11 0 chr12 22432355 22432449 -121850040 + MIR SINE MIR 52 146 -116 2063 138 3 16 chr12 22432992 22433296 -121849193 + AluSx SINE Alu 1 300 -12 1076 136 34 23 chr12 22433296 22433472 -121849017 + AluSg/x SINE Alu 134 311 -1 238 356 0 30 chr12 22434519 22434620 -121847869 + L2 LINE L2 3173 3270 -2 2165 116 27 3 chr12 22435158 22435459 -121847030 - AluSg SINE Alu -2 308 1 195 234 0 47 chr12 22435685 22435749 -121846740 - MER5A DNA MER1_type -114 75 15 439 265 61 8 chr12 22436019 22436151 -121846338 - L2 LINE L2 -397 2917 2779 2291 220 87 85 chr12 22436166 22436360 -121846129 - L1MC5 LINE L1 -36 7925 7733 1900 133 10 30 chr12 22436360 22436661 -121845828 - AluSx SINE Alu -17 295 1 2291 220 87 85 chr12 22436661 22438108 -121844381 - L1MC5 LINE L1 -228 7733 6293 2452 84 0 0 chr12 22438171 22438470 -121844019 + AluSc SINE Alu 1 299 -10 583 249 59 23 chr12 22438544 22438765 -121843724 - L1MC5 LINE L1 -1892 5916 5688 2344 279 68 35 chr12 22438775 22439632 -121842857 + L1PA15 LINE L1 2 886 -5901 15239 211 40 22 chr12 22439668 22440405 -121842084 + L1PA15 LINE L1 1264 1987 -4829 2077 87 11 14 chr12 22440405 22440692 -121841797 - AluY SINE Alu -13 298 13 15239 211 40 22 chr12 22440692 22442508 -121839981 + L1PA15 LINE L1 1987 3770 -3046 1776 181 3 0 chr12 22442508 22442801 -121839688 + AluJb SINE Alu 1 294 -18 15239 211 40 22 chr12 22442801 22445687 -121836802 + L1PA15 LINE L1 3770 6816 0 4081 135 35 55 chr12 22445838 22446609 -121835880 - LTR1 LTR ERV1 0 785 30 2969 176 15 31 chr12 22446793 22447408 -121835081 + MER6A DNA MER2_type 1 605 0 330 189 0 74 chr12 22448102 22448197 -121834292 - MIR SINE MIR 0 262 175 473 321 58 33 chr12 22448470 22448707 -121833782 + MIR SINE MIR 1 238 -24 1226 205 62 39 chr12 22451739 22452075 -121830414 + MER2 DNA MER2_type 1 344 0 215 250 0 17 chr12 22452476 22452536 -121829953 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 412 338 112 29 chr12 22452847 22453223 -121829266 - HAL1b LINE L1 -569 779 373 363 137 41 41 chr12 22453272 22453345 -121829144 + MLT1E1 LTR MaLR 1 73 -581 759 190 0 29 chr12 22453345 22453482 -121829007 + MLT1A2 LTR MaLR 1 133 -241 1891 82 4 8 chr12 22453482 22453725 -121828764 - AluSp SINE Alu -65 248 7 1268 237 107 7 chr12 22453772 22454072 -121828417 + MLT1E3 LTR MaLR 295 624 0 2527 258 24 30 chr12 22454074 22454876 -121827613 - L1ME1 LINE L1 -52 6114 5318 5325 138 21 28 chr12 22454885 22455730 -121826759 - L1PB3 LINE L1 -5 6149 5301 2301 83 0 0 chr12 22455730 22456019 -121826470 + AluY SINE Alu 1 289 -22 5325 138 21 28 chr12 22456019 22456401 -121826088 - L1PB3 LINE L1 -853 5301 4918 231 187 0 27 chr12 22456393 22456468 -121826021 - L1ME1 LINE L1 -816 5330 5258 * 622 121 0 0 chr12 22456480 22456571 -121825918 - AluSg/x SINE Alu -9 303 213 934 199 45 5 chr12 22456615 22456836 -121825653 - L1ME1 LINE L1 -968 5178 4949 2259 138 30 20 chr12 22456836 22457242 -121825247 - L1MA4A LINE L1 -6 6297 5888 1685 110 47 0 chr12 22457243 22457497 -121824992 + MSTB1 LTR MaLR 167 432 0 1995 246 71 2 chr12 22457498 22458034 -121824455 - L1ME1 LINE L1 -148 6018 5446 513 242 105 68 chr12 22458134 22458251 -121824238 - L1ME3A LINE L1 -17 6153 6042 2427 60 0 3 chr12 22458251 22458549 -121823940 - AluY SINE Alu -14 297 1 513 242 105 68 chr12 22458549 22458679 -121823810 - L1ME3A LINE L1 -128 6042 5897 2449 73 3 3 chr12 22459735 22460038 -121822451 - AluSp SINE Alu -7 306 4 609 244 139 42 chr12 22460315 22460553 -121821936 + MIR SINE MIR 2 262 0 285 414 53 6 chr12 22460638 22460807 -121821682 - MIR3 SINE MIR -11 197 21 217 367 0 0 chr12 22461566 22461645 -121820844 - L2 LINE L2 -8 3264 3186 * 278 337 11 0 chr12 22461632 22461724 -121820765 - MIR SINE MIR -158 104 12 281 244 26 13 chr12 22462142 22462220 -121820269 + MIR SINE MIR 63 141 -121 199 288 45 54 chr12 22462557 22462668 -121819821 - MIR SINE MIR -62 146 37 22 35 0 0 chr12 22463741 22463770 -121818719 + AT_rich Low_complexity Low_complexity 1 29 0 362 211 21 21 chr12 22464010 22464105 -121818384 - L1ME3A LINE L1 -339 5782 5688 207 0 0 0 chr12 22464576 22464599 -121817890 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 686 139 9 0 chr12 22464599 22464714 -121817775 - LTR9B LTR ERV1 -84 560 445 254 292 56 49 chr12 22464910 22465054 -121817435 - L1ME3A LINE L1 -1304 4842 4698 1510 174 107 58 chr12 22466871 22467303 -121815186 + MSTB2 LTR MaLR 5 457 0 593 261 21 0 chr12 22467759 22467901 -121814588 + MER58A DNA MER1_type 11 155 0 3053 288 123 8 chr12 22467946 22469116 -121813373 - L2 LINE L2 -1497 1817 513 585 227 34 23 chr12 22469150 22469326 -121813163 + MER5B DNA MER1_type 1 178 0 241 265 60 12 chr12 22469570 22469653 -121812836 + MIR SINE MIR 74 160 -102 35 71 0 0 chr12 22469767 22469837 -121812652 + AT_rich Low_complexity Low_complexity 1 70 0 186 262 16 33 chr12 22471956 22472017 -121810472 - MER5B DNA MER1_type 0 178 119 2036 142 3 0 chr12 22472170 22472466 -121810023 + AluSx SINE Alu 1 297 -15 974 306 51 21 chr12 22472815 22473204 -121809285 - LTR33 LTR ERVL -6 515 115 258 344 31 23 chr12 22473317 22473445 -121809044 - L2 LINE L2 -5 3308 3180 465 210 341 0 chr12 22473997 22474135 -121808354 - MER5A DNA MER1_type -1 188 4 1341 169 20 66 chr12 22474964 22475138 -121807351 + Tigger1 DNA MER2_type 2 158 -2260 2391 78 10 0 chr12 22475138 22475444 -121807045 - AluSg SINE Alu -1 309 1 1341 169 20 66 chr12 22475444 22475571 -121806918 + Tigger1 DNA MER2_type 158 289 -2129 * 7851 127 42 16 chr12 22475560 22475662 -121806827 + Tigger1 DNA MER2_type 1070 1168 -1250 2315 101 0 3 chr12 22475662 22475970 -121806519 + AluSx SINE Alu 1 307 -5 7851 127 42 16 chr12 22475970 22476768 -121805721 + Tigger1 DNA MER2_type 1168 2017 -401 584 216 17 0 chr12 22476768 22476884 -121805605 + FLAM_C SINE Alu 1 118 -15 7851 127 42 16 chr12 22476884 22477296 -121805193 + Tigger1 DNA MER2_type 2017 2417 -1 240 299 56 70 chr12 22477377 22477591 -121804898 - MLT1J LTR MaLR -191 320 110 483 335 49 5 chr12 22477855 22478040 -121804449 + MIR SINE MIR 57 249 -13 217 196 59 20 chr12 22479041 22479092 -121803397 - L2 LINE L2 -5 3308 3256 * 603 278 46 107 chr12 22479073 22479505 -121802984 + L2 LINE L2 2908 3313 0 192 264 222 0 chr12 22480137 22480209 -121802280 - MIR SINE MIR -73 189 102 23 33 0 0 chr12 22483485 22483515 -121798974 + AT_rich Low_complexity Low_complexity 1 30 0 420 229 81 93 chr12 22483711 22484034 -121798455 - L1M4c LINE L1 -4886 1233 915 532 168 40 16 chr12 22484223 22484347 -121798142 + MLT1A1 LTR MaLR 4 131 -234 285 345 17 8 chr12 22484357 22484476 -121798013 - L1M4c LINE L1 -5448 671 552 6941 162 25 6 chr12 22484493 22485719 -121796770 - L1PA13 LINE L1 -1364 4782 3533 6325 89 10 4 chr12 22485723 22487099 -121795390 + L1PA13 LINE L1 4777 6161 -2 2097 87 0 62 chr12 22487663 22487986 -121794503 + AluY SINE Alu 1 303 -8 1100 243 61 89 chr12 22488040 22488358 -121794131 - LTR16A1 LTR ERVL 0 457 132 957 147 0 0 chr12 22488358 22488528 -121793961 + (TCCC)n Simple_repeat Simple_repeat 3 172 0 1459 92 5 0 chr12 22488529 22488725 -121793764 - AluSg/x SINE Alu -33 279 83 1100 243 61 89 chr12 22488725 22488865 -121793624 - LTR16A1 LTR ERVL -324 133 10 11318 212 34 25 chr12 22489655 22493702 -121788787 - L1MA8 LINE L1 -1 6406 2310 1331 152 31 9 chr12 22493702 22493926 -121788563 - MER30 DNA MER1_type 0 230 2 11318 212 34 25 chr12 22493926 22494244 -121788245 - L1MA8 LINE L1 -4097 2310 1996 2955 236 26 48 chr12 22494260 22495339 -121787150 - L1M4c LINE L1 -4528 1603 549 392 153 59 0 chr12 22495362 22495447 -121787042 + L1M4 LINE L1 1290 1379 -5163 281 270 71 63 chr12 22495461 22495587 -121786902 - L1MA8 LINE L1 -5089 1214 1088 231 239 57 68 chr12 22495655 22495743 -121786746 - L1M4c LINE L1 -5489 561 475 302 237 26 13 chr12 22495796 22495872 -121786617 - L1M4c LINE L1 -5814 236 160 207 286 0 0 chr12 22497294 22497350 -121785139 + T-rich Low_complexity Low_complexity 1 56 0 3607 146 0 16 chr12 22497529 22498139 -121784350 - L1PA6 LINE L1 -4498 1648 1049 * 24441 66 8 2 chr12 22498138 22502553 -121779936 + L1PA6 LINE L1 1630 6154 0 21 0 0 0 chr12 22503565 22503586 -121778903 + AT_rich Low_complexity Low_complexity 1 21 0 1623 230 64 60 chr12 22505105 22505605 -121776884 + MLT1E LTR MaLR 92 593 0 188 329 158 36 chr12 22506477 22506781 -121775708 - L2 LINE L2 -407 2907 2567 295 313 116 0 chr12 22508100 22508212 -121774277 - L2 LINE L2 0 3313 3189 400 171 27 36 chr12 22508453 22508564 -121773925 + L1MC5 LINE L1 7802 7911 -50 292 212 141 12 chr12 22510177 22510262 -121772227 - MIR SINE MIR -1 261 166 231 127 56 28 chr12 22510262 22510333 -121772156 + (TATAA)n Simple_repeat Simple_repeat 5 77 0 384 270 138 33 chr12 22510334 22510486 -121772003 - MIR SINE MIR -94 168 1 218 246 0 43 chr12 22510535 22510604 -121771885 + L2 LINE L2 3174 3239 -33 1119 283 74 23 chr12 22510605 22511209 -121771280 - L1ME3A LINE L1 -331 5839 5192 359 327 81 24 chr12 22511313 22511732 -121770757 - MLT1J LTR MaLR -60 451 9 922 276 19 0 chr12 22513862 22514076 -121768413 - MIR SINE MIR -42 220 3 570 257 155 41 chr12 22514076 22514324 -121768165 - L2 LINE L2 -272 3041 2733 2294 105 0 6 chr12 22514324 22514638 -121767851 + AluSx SINE Alu 1 312 0 570 257 155 41 chr12 22514638 22514753 -121767736 - L2 LINE L2 -580 2733 2633 859 268 101 10 chr12 22515524 22515830 -121766659 - L2 LINE L2 -724 2590 2257 1884 177 6 15 chr12 22518841 22519175 -121763314 + MER1B DNA MER1_type 8 338 -1 14842 140 15 8 chr12 22519260 22519512 -121762977 + Tigger1 DNA MER2_type 1 250 -2168 1999 146 30 30 chr12 22519512 22519848 -121762641 - MER1B DNA MER1_type 0 337 2 14842 140 15 8 chr12 22519848 22521995 -121760494 + Tigger1 DNA MER2_type 250 2418 0 210 313 61 54 chr12 22522078 22522225 -121760264 - MER5B DNA MER1_type -28 150 3 180 0 0 0 chr12 22525854 22525874 -121756615 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr12 22526349 22526372 -121756117 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 22526656 22526677 -121755812 + AT_rich Low_complexity Low_complexity 1 21 0 286 286 87 16 chr12 22528054 22528180 -121754309 + L2 LINE L2 3138 3272 0 192 324 27 0 chr12 22528266 22528340 -121754149 - L2 LINE L2 -545 2769 2694 281 277 92 25 chr12 22529041 22529160 -121753329 + L2 LINE L2 3182 3308 -5 1534 79 75 0 chr12 22529373 22529587 -121752902 - MER30 DNA MER1_type 0 230 1 209 286 14 14 chr12 22529721 22529791 -121752698 + L2 LINE L2 3242 3311 -2 735 330 141 0 chr12 22530922 22531292 -121751197 - L2 LINE L2 -75 3238 2817 275 381 90 13 chr12 22531375 22531530 -121750959 - MIR SINE MIR -76 186 20 334 287 46 0 chr12 22531767 22531854 -121750635 + MIR SINE MIR 161 251 -11 615 294 64 9 chr12 22532925 22533143 -121749346 + MIR SINE MIR 1 230 -32 1892 96 81 15 chr12 22533167 22533460 -121749029 - AluSg SINE Alu 0 310 1 23 0 0 0 chr12 22533467 22533490 -121748999 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 22533527 22533549 -121748940 + AT_rich Low_complexity Low_complexity 1 22 0 633 315 61 23 chr12 22533666 22534142 -121748347 - L1M4 LINE L1 -2145 4001 3508 * 6545 42 2 4 chr12 22534137 22534945 -121747544 - L1PA7 LINE L1 -1 6153 5347 316 286 112 13 chr12 22534972 22535196 -121747293 - L1MEd LINE L1 -4970 1149 904 1929 236 95 45 chr12 22535216 22535903 -121746586 - L1ME3 LINE L1 -71 6091 5371 306 215 83 35 chr12 22535903 22536047 -121746442 - L1MEd LINE L1 -5287 832 682 326 319 115 0 chr12 22536422 22536535 -121745954 - MIR SINE MIR -64 144 19 3365 91 9 0 chr12 22536589 22537031 -121745458 - MLT2A2 LTR ERVL 0 453 8 449 284 232 0 chr12 22537096 22537307 -121745182 + MIR SINE MIR 3 262 0 301 326 196 7 chr12 22538787 22538925 -121743564 + MIR SINE MIR 10 173 -89 2274 107 0 25 chr12 22539233 22539550 -121742939 + AluSx SINE Alu 1 309 -3 1268 210 49 43 chr12 22540242 22540547 -121741942 - AluJo SINE Alu -5 307 1 269 196 186 0 chr12 22540958 22541055 -121741434 + MLT1H LTR MaLR 1 115 -434 32024 105 12 57 chr12 22541092 22547531 -121734958 - L1PA7 LINE L1 -1 6153 12 31 26 0 0 chr12 22548684 22548722 -121733767 + AT_rich Low_complexity Low_complexity 1 38 0 216 333 0 18 chr12 22549120 22549177 -121733312 - L2 LINE L2 -31 3241 3186 24 0 0 0 chr12 22549412 22549436 -121733053 + AT_rich Low_complexity Low_complexity 1 24 0 2795 12 0 0 chr12 22549765 22550191 -121732298 - L1PA2 LINE L1 -580 5575 5150 5310 12 0 0 chr12 22550191 22550806 -121731683 + L1PA2 LINE L1 5555 6177 0 330 350 115 0 chr12 22553298 22553515 -121728974 - MIR SINE MIR -1 261 20 740 308 45 12 chr12 22553583 22553830 -121728659 + MIR SINE MIR 8 262 0 1376 185 50 0 chr12 22553894 22554196 -121728293 - MER33 DNA MER1_type 0 324 8 300 86 379 0 chr12 22554557 22554615 -121727874 + MADE1 DNA Mariner 1 80 0 23 54 0 0 chr12 22554857 22554894 -121727595 + AT_rich Low_complexity Low_complexity 1 37 0 2281 90 10 0 chr12 22554899 22555199 -121727290 + AluSp SINE Alu 1 303 -10 21 0 0 0 chr12 22559267 22559288 -121723201 + AT_rich Low_complexity Low_complexity 1 21 0 293 157 0 39 chr12 22559321 22559372 -121723117 - MIR SINE MIR -84 124 76 220 333 75 50 chr12 22559432 22559552 -121722937 + L2 LINE L2 3150 3272 0 1017 170 23 0 chr12 22560147 22560318 -121722171 + FAM SINE Alu 1 175 0 463 254 127 15 chr12 22561532 22561666 -121720823 + L2 LINE L2 3165 3313 0 2816 91 5 0 chr12 22561895 22562268 -121720221 - THE1C LTR MaLR 0 375 1 1876 133 55 33 chr12 22562521 22562888 -121719601 + THE1C LTR MaLR 1 375 0 671 289 21 11 chr12 22562894 22563084 -121719405 + MIR SINE MIR 23 214 -48 4640 52 0 0 chr12 22563809 22564381 -121718108 + L1PA7 LINE L1 5579 6150 -4 384 301 71 36 chr12 22564515 22564711 -121717778 + L2 LINE L2 3076 3278 -35 190 263 70 0 chr12 22565333 22565390 -121717099 + MIR SINE MIR 160 220 -42 2028 152 0 0 chr12 22566424 22566733 -121715756 + AluJb SINE Alu 1 309 -3 205 200 0 0 chr12 22567478 22567518 -121714971 + (TA)n Simple_repeat Simple_repeat 2 41 0 396 0 0 0 chr12 22567560 22567604 -121714885 + (T)n Simple_repeat Simple_repeat 1 44 0 22 35 0 0 chr12 22568843 22568872 -121713617 + AT_rich Low_complexity Low_complexity 1 29 0 1738 114 4 4 chr12 22569406 22569660 -121712829 - L1PA8A LINE L1 0 6131 5878 317 146 0 18 chr12 22569975 22570030 -121712459 - L1MC4 LINE L1 -1374 6668 6615 324 0 0 0 chr12 22570050 22570086 -121712403 + (TG)n Simple_repeat Simple_repeat 1 36 0 237 128 0 0 chr12 22570367 22570406 -121712083 - MADE1 DNA Mariner -40 40 2 363 325 64 6 chr12 22571015 22571172 -121711317 + MIR SINE MIR 31 196 -66 316 295 54 9 chr12 22571908 22572020 -121710469 + L2 LINE L2 2694 2810 -504 850 321 97 38 chr12 22572099 22572573 -121709916 + L2 LINE L2 2810 3311 -2 25 51 0 0 chr12 22572930 22572969 -121709520 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr12 22573714 22573741 -121708748 + AT_rich Low_complexity Low_complexity 1 27 0 2201 99 27 0 chr12 22574041 22574333 -121708156 + AluY SINE Alu 1 300 -11 5645 94 0 44 chr12 22575668 22576552 -121705937 - L1P LINE L1 -2148 3998 3154 6232 57 1 0 chr12 22576552 22577327 -121705162 + L1PA7 LINE L1 5378 6153 -1 408 20 0 0 chr12 22579051 22579100 -121703389 + (CA)n Simple_repeat Simple_repeat 2 50 0 259 216 190 26 chr12 22579847 22579963 -121702526 - MIR SINE MIR -11 251 117 2650 48 0 0 chr12 22580715 22581024 -121701465 - AluY SINE Alu -2 309 1 386 20 20 0 chr12 22582498 22582549 -121699940 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 1920 104 8 0 chr12 22582579 22582830 -121699659 - AluSx SINE Alu -14 298 46 347 293 81 16 chr12 22582874 22582997 -121699492 - L2 LINE L2 0 3272 3142 5205 114 8 3 chr12 22584044 22584805 -121697684 + L1PB1 LINE L1 5387 6151 0 475 353 87 36 chr12 22585075 22585797 -121696692 + L2 LINE L2 1316 2074 -1240 369 0 0 0 chr12 22586310 22586351 -121696138 + (CA)n Simple_repeat Simple_repeat 2 42 0 337 359 56 59 chr12 22586764 22587051 -121695438 - L2 LINE L2 -1 3271 2986 866 347 77 36 chr12 22587220 22587937 -121694552 + L2 LINE L2 2149 2894 -420 377 290 46 50 chr12 22588215 22588453 -121694036 - L2 LINE L2 -4 3309 3073 257 294 87 11 chr12 22588495 22588587 -121693902 + L2 LINE L2 3174 3272 0 24 53 0 0 chr12 22589172 22589210 -121693279 + AT_rich Low_complexity Low_complexity 1 38 0 365 327 80 6 chr12 22589214 22589376 -121693113 - MIR SINE MIR -14 248 75 186 337 11 63 chr12 22589962 22590057 -121692432 - L2 LINE L2 -183 3089 3000 1855 150 27 0 chr12 22590275 22590568 -121691921 + AluSx SINE Alu 1 301 -11 224 409 0 27 chr12 22590802 22590951 -121691538 - L2 LINE L2 -838 2476 2332 197 347 78 72 chr12 22592513 22592680 -121689809 + L2 LINE L2 3096 3263 -9 2502 74 0 0 chr12 22592871 22593180 -121689309 - AluSg SINE Alu -1 309 1 969 157 13 1 chr12 22593475 22593639 -121688850 + MER2 DNA MER2_type 1 173 -163 243 316 45 19 chr12 22594199 22594354 -121688135 - L1MC4a LINE L1 -1854 5954 5796 351 274 93 76 chr12 22594384 22594727 -121687762 - L1MC4a LINE L1 -776 5370 5022 233 338 88 0 chr12 22594769 22594905 -121687584 - L1MC4a LINE L1 -1210 4936 4789 260 248 9 19 chr12 22595153 22595258 -121687231 - L1MC4a LINE L1 -1877 4269 4166 21 36 0 0 chr12 22595725 22595753 -121686736 + AT_rich Low_complexity Low_complexity 1 28 0 197 263 158 0 chr12 22596954 22597030 -121685459 - MIR SINE MIR -10 252 165 182 79 0 53 chr12 22601120 22601158 -121681331 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 869 185 105 20 chr12 22601585 22601785 -121680704 - MER20 DNA MER1_type 0 219 3 21 0 0 0 chr12 22602608 22602629 -121679860 + AT_rich Low_complexity Low_complexity 1 21 0 493 270 7 47 chr12 22602899 22603047 -121679442 + MIR SINE MIR 47 188 -74 184 318 12 59 chr12 22603212 22603297 -121679192 - MIR SINE MIR -74 188 108 894 101 29 0 chr12 22604164 22604303 -121678186 + L1PA15 LINE L1 6023 6165 0 2022 101 13 51 chr12 22604556 22604872 -121677617 + AluSx SINE Alu 1 304 -8 341 270 81 9 chr12 22604880 22604991 -121677498 + MIR SINE MIR 144 262 0 22 0 0 0 chr12 22606683 22606705 -121675784 + AT_rich Low_complexity Low_complexity 1 22 0 2046 119 0 7 chr12 22606731 22607045 -121675444 - AluSx SINE Alu 0 312 1 209 147 0 0 chr12 22607163 22607197 -121675292 + MIR SINE MIR 119 152 -110 557 346 76 5 chr12 22607396 22607528 -121674961 + MIR SINE MIR 8 162 -100 222 118 0 0 chr12 22607528 22607562 -121674927 + (TAA)n Simple_repeat Simple_repeat 1 34 0 557 346 76 5 chr12 22607562 22607640 -121674849 + MIR SINE MIR 162 233 -29 318 299 21 0 chr12 22608250 22608347 -121674142 + GA-rich Low_complexity Low_complexity 2 100 0 324 308 147 13 chr12 22608769 22608993 -121673496 + L3 LINE CR1 1147 1400 -177 1591 239 95 25 chr12 22608993 22609465 -121673024 + MLT1D LTR MaLR 1 505 0 2020 139 0 17 chr12 22609815 22610117 -121672372 + AluSx SINE Alu 1 297 -15 538 251 64 11 chr12 22611617 22611804 -121670685 - MIR SINE MIR 0 262 66 419 307 136 0 chr12 22611806 22611982 -121670507 + MIR SINE MIR 8 207 -55 200 191 43 21 chr12 22612666 22612713 -121669776 - MIR SINE MIR -3 259 212 1970 143 3 10 chr12 22612755 22613055 -121669434 - AluSx SINE Alu -14 298 1 207 219 0 0 chr12 22613735 22613776 -121668713 + (TA)n Simple_repeat Simple_repeat 1 41 0 25 0 0 0 chr12 22614879 22614904 -121667585 + AT_rich Low_complexity Low_complexity 1 25 0 216 287 225 8 chr12 22616265 22616394 -121666095 + MIR3 SINE MIR 49 205 -3 194 307 117 28 chr12 22617081 22617260 -121665229 - L2 LINE L2 -901 2413 2219 240 287 156 8 chr12 22617301 22617423 -121665066 - L2 LINE L2 -6 3307 3168 240 368 124 30 chr12 22617597 22617896 -121664593 - L2 LINE L2 -342 2972 2646 335 344 9 40 chr12 22617954 22618178 -121664311 + L2 LINE L2 3097 3313 0 210 167 0 0 chr12 22619341 22619377 -121663112 + A-rich Low_complexity Low_complexity 1 36 0 2304 97 0 0 chr12 22619881 22620181 -121662308 + AluY SINE Alu 1 300 -11 23 68 0 0 chr12 22620525 22620569 -121661920 + AT_rich Low_complexity Low_complexity 1 44 0 629 307 69 62 chr12 22620786 22621403 -121661086 + L2 LINE L2 2510 3308 -5 1788 166 0 10 chr12 22621778 22622073 -121660416 - AluJo SINE Alu -12 300 9 1143 138 38 5 chr12 22623172 22623382 -121659107 - MER20 DNA MER1_type -2 217 1 32 26 0 0 chr12 22624424 22624463 -121658026 + AT_rich Low_complexity Low_complexity 1 39 0 402 141 71 0 chr12 22624781 22624866 -121657623 - L1MA10 LINE L1 -1722 4424 4334 * 3956 165 52 14 chr12 22624865 22626327 -121656162 + L1MA10 LINE L1 4408 5940 -249 1817 184 5 35 chr12 22626380 22626777 -121655712 + L1MA10 LINE L1 5948 6332 -2 1569 64 0 0 chr12 22627326 22627513 -121654976 + AluY SINE Alu 1 187 -124 501 33 0 0 chr12 22627513 22627574 -121654915 + AluY SINE Alu 221 281 -31 216 0 0 0 chr12 22627578 22627602 -121654887 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 203 319 44 44 chr12 22628602 22628715 -121653774 - L2 LINE L2 -24 3248 3136 258 337 39 42 chr12 22629180 22629465 -121653024 - L2 LINE L2 -1903 1411 1128 181 407 105 23 chr12 22630005 22630349 -121652140 - L2 LINE L2 -2561 753 382 1437 142 82 15 chr12 22630872 22631140 -121651349 + L1MB5 LINE L1 5881 6166 -8 23 0 0 0 chr12 22631146 22631169 -121651320 + AT_rich Low_complexity Low_complexity 1 23 0 354 353 94 14 chr12 22631352 22631627 -121650862 + L1ME3A LINE L1 4664 4960 -1186 702 245 44 69 chr12 22631735 22632104 -121650385 + L1ME3A LINE L1 4958 5314 -832 1033 217 229 55 chr12 22632135 22632568 -121649921 + L1ME3A LINE L1 5387 5894 -276 266 280 42 50 chr12 22632372 22632611 -121649878 + L1MA3 LINE L1 5705 5941 -364 * 22 35 0 0 chr12 22632791 22632820 -121649669 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr12 22633231 22633258 -121649231 + (CA)n Simple_repeat Simple_repeat 2 28 0 301 245 0 0 chr12 22633258 22633311 -121649178 + MER5B DNA MER1_type 125 177 -1 290 321 94 17 chr12 22633346 22633510 -121648979 - MIR3 SINE MIR -59 149 14 2280 76 0 10 chr12 22634799 22635101 -121647388 + THE1B LTR MaLR 66 364 0 1601 195 3 7 chr12 22635599 22635896 -121646593 - AluJo SINE Alu -16 296 1 189 0 0 0 chr12 22637306 22637327 -121645162 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1623 287 118 35 chr12 22637631 22638664 -121643825 + L2 LINE L2 2172 3295 -18 525 232 18 0 chr12 22639604 22639716 -121642773 + MER81 DNA DNA 1 114 0 380 283 88 31 chr12 22639809 22639968 -121642521 - MIR SINE MIR -86 176 9 304 265 31 10 chr12 22640016 22640114 -121642375 + MER5A DNA MER1_type 4 103 -86 239 308 90 0 chr12 22641046 22641124 -121641365 + L2 LINE L2 3187 3271 -1 318 325 151 39 chr12 22641411 22641617 -121640872 + L2 LINE L2 3044 3272 0 193 386 14 59 chr12 22641855 22642075 -121640414 + L2 LINE L2 2828 3037 -235 3481 34 0 0 chr12 22642086 22642504 -121639985 + L1PA4 LINE L1 5735 6152 -3 353 237 100 46 chr12 22644895 22645039 -121637450 + L1ME LINE L1 5486 5638 -483 626 265 65 25 chr12 22645041 22645286 -121637203 + L1ME4a LINE L1 5566 5820 -301 23 54 0 0 chr12 22645353 22645390 -121637099 + AT_rich Low_complexity Low_complexity 1 37 0 271 204 183 22 chr12 22645396 22645533 -121636956 + L1ME4a LINE L1 5962 6120 -1 1049 164 0 6 chr12 22646138 22646303 -121636186 - AluJb SINE Alu -17 295 132 707 200 133 0 chr12 22646488 22646653 -121635836 + MER20 DNA MER1_type 33 219 0 187 300 144 22 chr12 22647515 22647605 -121634884 - MIR SINE MIR -66 142 42 817 0 0 0 chr12 22647629 22647723 -121634766 - L1PA2 LINE L1 -2 6153 6060 6115 70 49 0 chr12 22647971 22648919 -121633570 - L1PA10 LINE L1 -11 6157 5170 576 252 23 64 chr12 22648978 22649203 -121633286 - MIR SINE MIR -16 246 34 358 316 15 52 chr12 22649407 22649543 -121632946 + MIR SINE MIR 31 161 -101 727 198 64 6 chr12 22649544 22649701 -121632788 + FRAM SINE Alu 1 166 -10 283 313 18 9 chr12 22649701 22649813 -121632676 + MIR SINE MIR 150 262 0 1893 123 3 3 chr12 22650568 22650853 -121631636 - MER75 DNA T2_type 0 514 230 41082 59 9 1 chr12 22650859 22656947 -121625542 + L1PA5 LINE L1 12 6151 -3 1637 127 8 0 chr12 22656947 22657192 -121625297 - MER75 DNA T2_type -264 250 4 292 287 101 31 chr12 22657336 22657465 -121625024 - MIR3 SINE MIR -56 152 15 256 93 93 74 chr12 22657466 22657520 -121624969 + MER3 DNA MER1_type 153 207 -2 274 306 109 48 chr12 22657879 22658026 -121624463 + MIR3 SINE MIR 28 183 -25 218 280 118 21 chr12 22661237 22661285 -121621204 + MIR SINE MIR 50 92 -170 527 307 74 25 chr12 22661285 22661529 -121620960 - MIR SINE MIR -2 260 5 218 280 118 21 chr12 22661529 22661573 -121620916 + MIR SINE MIR 92 151 -111 220 314 0 0 chr12 22663597 22663648 -121618841 - L2 LINE L2 -243 3070 3020 22 0 0 0 chr12 22663826 22663848 -121618641 + AT_rich Low_complexity Low_complexity 1 22 0 222 370 0 11 chr12 22664068 22664160 -121618329 + MIR SINE MIR 162 252 -10 2411 90 0 0 chr12 22666424 22666724 -121615765 - AluSp SINE Alu -13 300 1 333 0 0 0 chr12 22666749 22666786 -121615703 + (TG)n Simple_repeat Simple_repeat 2 38 0 311 203 0 38 chr12 22666799 22666878 -121615611 - L1MC3 LINE L1 -1139 6646 6571 308 304 0 22 chr12 22666889 22666981 -121615508 + L1MC4 LINE L1 6614 6703 -1339 * 311 322 0 0 chr12 22666915 22667005 -121615484 - L1MC4 LINE L1 -1339 6703 6614 180 0 0 0 chr12 22667005 22667025 -121615464 + (TG)n Simple_repeat Simple_repeat 2 21 0 731 107 0 0 chr12 22667038 22667141 -121615348 - AluY SINE Alu -14 297 195 205 302 111 0 chr12 22668047 22668110 -121614379 + MIR3 SINE MIR 124 193 -15 255 186 17 68 chr12 22668207 22668266 -121614223 + L2 LINE L2 3217 3272 0 21 0 0 0 chr12 22668330 22668351 -121614138 + AT_rich Low_complexity Low_complexity 1 21 0 402 247 38 71 chr12 22669537 22670058 -121612431 + L1M4 LINE L1 2190 2828 -3318 668 243 79 23 chr12 22670064 22670241 -121612248 - MLT1E LTR MaLR -2 591 438 361 266 28 0 chr12 22670297 22670406 -121612083 - MLT1E LTR MaLR -467 126 15 2610 249 64 85 chr12 22670416 22671942 -121610547 + L1M4 LINE L1 2826 4319 -1827 180 0 0 0 chr12 22671944 22671964 -121610525 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 350 86 35 0 chr12 22671970 22672028 -121610461 - L1MA2 LINE L1 -22 6282 6223 3299 192 58 20 chr12 22672245 22673026 -121609463 - Tigger1 DNA MER2_type -441 1977 1168 4640 83 35 16 chr12 22673126 22673821 -121608668 + L1PA13 LINE L1 5452 6159 -4 752 208 0 6 chr12 22674506 22674679 -121607810 + GA-rich Low_complexity Low_complexity 1 172 0 342 369 45 0 chr12 22674733 22674912 -121607577 + L1M4 LINE L1 2959 3145 -3001 23 0 0 0 chr12 22675410 22675433 -121607056 + AT_rich Low_complexity Low_complexity 1 23 0 3154 34 13 0 chr12 22676035 22676416 -121606073 - L1PA5 LINE L1 -6 6148 5763 1236 157 8 30 chr12 22676805 22677041 -121605448 + L1MC1 LINE L1 5651 5881 -452 613 205 0 0 chr12 22677058 22677170 -121605319 + L1MC1 LINE L1 6205 6316 -17 22 0 0 0 chr12 22677241 22677263 -121605226 + AT_rich Low_complexity Low_complexity 1 22 0 1522 160 4 15 chr12 22677269 22677531 -121604958 + THE1C LTR MaLR 1 259 -116 184 352 84 0 chr12 22678235 22678306 -121604183 - L2 LINE L2 -39 3233 3157 315 200 62 0 chr12 22678544 22678609 -121603880 + L2 LINE L2 3245 3313 0 281 358 58 0 chr12 22679692 22679812 -121602677 - LTR16A LTR ERVL -323 127 1 315 0 0 0 chr12 22681764 22681799 -121600690 + (CAA)n Simple_repeat Simple_repeat 2 36 0 183 337 79 10 chr12 22682786 22682887 -121599602 - L2 LINE L2 -796 2518 2411 250 297 237 0 chr12 22683221 22683339 -121599150 - L2 LINE L2 -2 3311 3166 234 319 61 80 chr12 22683607 22683920 -121598569 + L1ME2 LINE L1 310 616 -5503 419 222 105 63 chr12 22684127 22684366 -121598123 + LTR16C LTR ERVL 234 482 -9 301 326 11 11 chr12 22684544 22684728 -121597761 + L1ME2 LINE L1 1026 1209 -4910 415 266 64 14 chr12 22684803 22685021 -121597468 + L1ME2 LINE L1 1306 1534 -4595 344 200 0 0 chr12 22685413 22685473 -121597016 - MER41A LTR ERV1 -9 545 486 5266 152 16 4 chr12 22685573 22686824 -121595665 - L1M1 LINE L1 -671 5631 4364 882 134 0 0 chr12 22686807 22686941 -121595548 - L1M1 LINE L1 -2289 3857 3724 * 2604 235 82 33 chr12 22686940 22688701 -121593788 + L1ME2 LINE L1 4298 6136 -11 281 262 49 93 chr12 22688706 22688931 -121593558 + L1MC4 LINE L1 7827 8041 -1 334 344 107 20 chr12 22691000 22691253 -121591236 - L2 LINE L2 -65 3207 2933 432 305 144 58 chr12 22691457 22692274 -121590215 - L2 LINE L2 -160 3112 2192 1902 164 0 0 chr12 22692416 22692708 -121589781 + AluSx SINE Alu 1 292 -20 232 125 0 0 chr12 22692711 22692743 -121589746 + (GGGGA)n Simple_repeat Simple_repeat 5 36 0 423 132 0 13 chr12 22692743 22692819 -121589670 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 719 287 20 0 chr12 22693728 22693930 -121588559 - L2 LINE L2 -460 2854 2649 330 192 253 0 chr12 22694017 22694116 -121588373 - MIR SINE MIR -45 217 94 217 257 214 0 chr12 22695283 22695353 -121587136 - L2 LINE L2 -15 3257 3173 388 295 86 0 chr12 22699194 22699333 -121583156 + MIR SINE MIR 2 152 -110 33 25 0 0 chr12 22699335 22699375 -121583114 + AT_rich Low_complexity Low_complexity 1 40 0 409 317 79 18 chr12 22699375 22699703 -121582786 - L1ME LINE L1 -303 5818 5471 211 254 95 16 chr12 22699999 22700062 -121582427 - L2 LINE L2 -1 3312 3245 294 246 52 75 chr12 22700282 22700416 -121582073 - L1ME LINE L1 -1221 4925 4795 2519 228 66 37 chr12 22701019 22701805 -121580684 - L1ME2 LINE L1 -1 6163 5355 384 207 193 36 chr12 22701807 22701947 -121580542 + MLT1E2 LTR MaLR 3 164 -460 278 299 31 23 chr12 22701947 22702092 -121580397 + L1MA9 LINE L1 1356 1649 -5837 1668 254 78 12 chr12 22702759 22703576 -121578913 + L1MA9 LINE L1 1897 2775 -4721 632 74 0 0 chr12 22703573 22703654 -121578835 + L1PB1 LINE L1 5867 5947 -204 * 11838 216 60 30 chr12 22703650 22706409 -121576080 + L1MA9 LINE L1 2989 5942 -1789 2517 156 21 13 chr12 22706409 22706883 -121575606 + L1MA4 LINE L1 5812 6289 -11 11838 216 60 30 chr12 22706883 22708729 -121573760 + L1MA9 LINE L1 5942 7731 0 1421 250 95 41 chr12 22708733 22709217 -121573272 + MLT1E2 LTR MaLR 117 626 0 4504 257 67 52 chr12 22709217 22709327 -121573162 - L1M4 LINE L1 -787 5359 5252 1493 129 40 0 chr12 22709327 22709575 -121572914 - L1MA2 LINE L1 0 6304 6047 4504 257 67 52 chr12 22709575 22711611 -121570878 - L1M4 LINE L1 -894 5252 3181 321 230 35 9 chr12 22711600 22711713 -121570776 - L1M4 LINE L1 -3204 2942 2827 * 533 222 8 8 chr12 22711735 22711861 -121570628 - L1ME1 LINE L1 -6 6160 6035 2306 113 0 0 chr12 22712326 22712626 -121569863 - AluSx SINE Alu -4 308 9 365 292 85 0 chr12 22712752 22712882 -121569607 + MIR SINE MIR 109 249 -13 8664 100 45 0 chr12 22713013 22714245 -121568244 + HSMAR1 DNA Mariner 1 1287 0 331 223 60 130 chr12 22715080 22715264 -121567225 + MER5A DNA MER1_type 10 180 -9 256 362 79 0 chr12 22715540 22715692 -121566797 + L2 LINE L2 3145 3308 -5 22 70 0 0 chr12 22716383 22716426 -121566063 + AT_rich Low_complexity Low_complexity 1 43 0 431 174 79 9 chr12 22716557 22716671 -121565818 - MLT1A1 LTR MaLR -215 150 24 6089 150 64 15 chr12 22716671 22717261 -121565228 + L1MA5 LINE L1 4130 4690 -1613 1911 168 0 3 chr12 22717261 22717546 -121564943 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr12 22717546 22717567 -121564922 + (CA)n Simple_repeat Simple_repeat 2 22 0 6089 150 64 15 chr12 22717567 22718391 -121564098 + L1MA5 LINE L1 4689 5586 -717 * 36190 101 8 10 chr12 22718386 22724555 -121557934 + L1PA6 LINE L1 2 6154 0 3442 144 21 72 chr12 22724555 22725314 -121557175 + L1MA5 LINE L1 5572 6295 -5 23 33 0 0 chr12 22725832 22725862 -121556627 + AT_rich Low_complexity Low_complexity 1 30 0 667 295 133 50 chr12 22728705 22729229 -121553260 - L2 LINE L2 0 3313 2748 434 244 42 17 chr12 22729667 22729786 -121552703 + MER5B DNA MER1_type 1 122 -56 441 247 21 0 chr12 22729855 22729952 -121552537 - MLT1J1 LTR MaLR -315 131 33 22 35 0 0 chr12 22730090 22730119 -121552370 + AT_rich Low_complexity Low_complexity 1 29 0 1930 130 0 0 chr12 22732159 22732428 -121550061 + AluSx SINE Alu 1 269 -43 763 249 30 0 chr12 22782726 22782895 -121499594 + MIR SINE MIR 62 235 -27 212 318 63 0 chr12 22782980 22783043 -121499446 + MIR3 SINE MIR 135 201 -7 1001 188 24 43 chr12 22783085 22783292 -121499197 - MER58A DNA MER1_type 0 224 22 194 274 0 32 chr12 22783535 22783597 -121498892 - MIR3 SINE MIR -21 187 128 590 233 195 19 chr12 22784352 22784562 -121497927 - MIR SINE MIR -3 259 13 321 170 0 0 chr12 22784568 22784621 -121497868 - L2 LINE L2 -1 3271 3219 183 238 24 0 chr12 22784589 22784631 -121497858 - MIR SINE MIR -16 246 204 * 344 333 37 30 chr12 22784728 22784863 -121497626 + L2 LINE L2 3137 3272 0 1864 137 34 17 chr12 22785504 22785797 -121496692 + AluSx SINE Alu 1 298 -14 261 188 0 0 chr12 22785849 22785897 -121496592 + L1MC4 LINE L1 6656 6703 -1339 295 213 31 8 chr12 22785903 22786030 -121496459 + (TA)n Simple_repeat Simple_repeat 1 130 0 2443 43 0 0 chr12 22786090 22786395 -121496094 + AluY SINE Alu 1 305 0 2128 122 0 0 chr12 22786408 22786719 -121495770 - AluSx SINE Alu -1 311 1 1408 103 15 0 chr12 22787226 22787421 -121495068 - L1PA15 LINE L1 -13 6152 5955 24 67 0 0 chr12 22787440 22787485 -121495004 + AT_rich Low_complexity Low_complexity 1 45 0 449 298 53 7 chr12 22788541 22788848 -121493641 - L1M4b LINE L1 -5119 1828 1385 211 305 211 0 chr12 22789397 22789525 -121492964 + L2 LINE L2 3104 3258 -55 420 20 0 0 chr12 22789719 22789768 -121492721 + (CA)n Simple_repeat Simple_repeat 2 50 0 2083 113 7 13 chr12 22790317 22790618 -121491871 - AluSx SINE Alu -13 299 1 2431 81 0 0 chr12 22790637 22790935 -121491554 + AluSg SINE Alu 1 298 -12 189 0 0 0 chr12 22791621 22791642 -121490847 + (TA)n Simple_repeat Simple_repeat 1 21 0 499 352 20 10 chr12 22791822 22792021 -121490468 - MIR SINE MIR -15 247 47 234 0 0 0 chr12 22792826 22792852 -121489637 + (A)n Simple_repeat Simple_repeat 1 26 0 1549 191 0 38 chr12 22792852 22793171 -121489318 + AluJo SINE Alu 1 307 -5 282 257 0 71 chr12 22794996 22795122 -121487367 + L1ME4a LINE L1 5481 5594 -527 412 273 9 9 chr12 22795197 22795307 -121487182 + MIR SINE MIR 123 232 -30 185 340 130 12 chr12 22795899 22796061 -121486428 + MIR SINE MIR 55 235 -27 234 258 102 24 chr12 22796061 22796228 -121486261 + L1ME4a LINE L1 5942 6121 0 736 191 0 0 chr12 22796305 22796436 -121486053 + FLAM_C SINE Alu 1 131 -2 22 80 0 0 chr12 22796478 22796528 -121485961 + AT_rich Low_complexity Low_complexity 1 50 0 456 218 54 57 chr12 22796892 22797172 -121485317 + L1MC5 LINE L1 7493 7771 -190 1030 179 71 9 chr12 22798309 22798521 -121483968 + MER8 DNA MER2_type 13 237 -2 14232 129 38 7 chr12 22798636 22799406 -121483083 - Tigger1 DNA MER2_type 0 2418 1673 2010 81 0 0 chr12 22799406 22799678 -121482811 - AluY SINE Alu 0 307 36 14232 129 38 7 chr12 22799678 22801251 -121481238 - Tigger1 DNA MER2_type -745 1673 1 30 100 0 0 chr12 22801554 22801654 -121480835 + AT_rich Low_complexity Low_complexity 1 100 0 315 194 28 14 chr12 22802475 22802547 -121479942 + L1MCa LINE L1 168 240 -6324 809 224 43 111 chr12 22802595 22803134 -121479355 + L1MCa LINE L1 64 565 -5480 1160 254 68 33 chr12 22803230 22803729 -121478760 + L1MCa LINE L1 571 1068 -4977 2809 148 60 24 chr12 22803735 22804314 -121478175 - LTR36 LTR ERV1 -1 610 11 2444 94 0 0 chr12 22804315 22804624 -121477865 + AluSg SINE Alu 1 309 -1 260 280 30 30 chr12 22804711 22804843 -121477646 - LTR36-int LTR ERV1 -52 8068 7937 316 191 44 0 chr12 22805157 22805225 -121477264 - MER49 LTR ERV1 -163 760 690 880 166 83 48 chr12 22805245 22805474 -121477015 - LTR36-int LTR ERV1 -181 6150 5914 10510 160 32 68 chr12 22805487 22805536 -121476953 - LTR36-int LTR ERV1 -455 5422 5373 1910 150 7 33 chr12 22805536 22805836 -121476653 + AluSx SINE Alu 1 292 -20 10510 160 32 68 chr12 22805836 22808388 -121474101 - LTR36-int LTR ERV1 -504 5373 3023 2637 182 17 36 chr12 22808388 22808964 -121473525 + L1M1 LINE L1 129 693 -6872 591 126 42 42 chr12 22809010 22809129 -121473360 - LTR36-int LTR ERV1 -2392 1893 1775 310 263 75 23 chr12 22809203 22809336 -121473153 - LTR36-int LTR ERV1 -2724 1561 1422 2173 110 3 0 chr12 22809632 22809924 -121472565 + AluSx SINE Alu 1 293 -19 588 287 25 42 chr12 22809998 22810235 -121472254 - LTR36-int LTR ERV1 -1439 347 115 3131 145 61 20 chr12 22810344 22810931 -121471558 - LTR36 LTR ERV1 0 611 1 2736 190 198 62 chr12 22810931 22811142 -121471347 + L1MCa LINE L1 1072 1253 -5463 2459 64 7 0 chr12 22811142 22811438 -121471051 - AluSg SINE Alu -12 298 1 2736 190 198 62 chr12 22811438 22812698 -121469791 + L1MCa LINE L1 1253 2764 -3952 412 303 71 55 chr12 22812728 22813175 -121469314 - MLT1H1 LTR MaLR -4 545 36 584 250 60 12 chr12 22813283 22813451 -121469038 + MIR SINE MIR 87 262 0 354 337 48 18 chr12 22813448 22813614 -121468875 + MIR3 SINE MIR 32 202 -6 * 683 186 8 8 chr12 22813801 22813930 -121468559 - FLAM_C SINE Alu -14 129 1 396 77 231 0 chr12 22814074 22814139 -121468350 + MADE1 DNA Mariner 1 80 0 219 326 14 83 chr12 22814187 22814331 -121468158 - L2 LINE L2 -457 2857 2724 888 266 107 15 chr12 22814936 22815339 -121467150 + LTR16A LTR ERVL 1 440 -10 261 0 0 0 chr12 22815585 22815614 -121466875 + (T)n Simple_repeat Simple_repeat 1 29 0 1983 112 11 11 chr12 22816211 22816496 -121465993 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr12 22816496 22816534 -121465955 + (CA)n Simple_repeat Simple_repeat 2 39 0 478 239 80 14 chr12 22816593 22816731 -121465758 - MIR SINE MIR -62 200 54 484 319 33 16 chr12 22816782 22816964 -121465525 + MER5A DNA MER1_type 1 185 -4 427 301 26 39 chr12 22817197 22817353 -121465136 + MER5B DNA MER1_type 25 178 0 2051 134 151 3 chr12 22819768 22820140 -121462349 + MSTA LTR MaLR 2 428 0 232 247 49 62 chr12 22820886 22820967 -121461522 - L2 LINE L2 -2 3311 3232 427 328 29 18 chr12 22822132 22822303 -121460186 + L2 LINE L2 62 234 -3080 649 291 109 53 chr12 22822355 22822459 -121460030 + L2 LINE L2 2308 2405 -909 1787 151 67 20 chr12 22822459 22822817 -121459672 + THE1C LTR MaLR 1 375 0 649 291 109 53 chr12 22822817 22823180 -121459309 + L2 LINE L2 2405 2801 -513 2104 150 0 0 chr12 22823349 22823643 -121458846 - AluSx SINE Alu -18 294 1 288 275 83 25 chr12 22823681 22823801 -121458688 + L2 LINE L2 3185 3311 -2 2318 99 0 0 chr12 22824827 22825119 -121457370 - AluSc SINE Alu -17 292 1 1770 156 39 0 chr12 22825121 22825404 -121457085 - AluJb SINE Alu -17 295 2 222 276 25 98 chr12 22826281 22826444 -121456045 + L2 LINE L2 2906 3056 -216 206 333 50 0 chr12 22826525 22826585 -121455904 + L2 LINE L2 3251 3313 0 234 0 0 0 chr12 22826718 22826744 -121455745 + (TA)n Simple_repeat Simple_repeat 2 27 0 2506 51 0 0 chr12 22826744 22827040 -121455449 - AluY SINE Alu -15 296 1 16668 197 27 40 chr12 22828050 22832753 -121449736 - L1PA13 LINE L1 -1 7600 3342 2883 10 0 0 chr12 22832753 22833065 -121449424 + AluYb8 SINE Alu 1 312 -6 16668 197 27 40 chr12 22833065 22836367 -121446122 - L1PA13 LINE L1 -4259 3342 1 195 307 22 80 chr12 22837465 22837602 -121444887 + L2 LINE L2 3141 3269 -3 3339 141 46 5 chr12 22837837 22838437 -121444052 - Tigger1 DNA MER2_type -1 2417 1793 1910 128 37 35 chr12 22838437 22838811 -121443678 - THE1C LTR MaLR 0 375 1 * 5730 117 20 13 chr12 22838811 22839746 -121442743 - Tigger1 DNA MER2_type -621 1797 856 1118 162 5 0 chr12 22839765 22839963 -121442526 + L1PB1 LINE L1 2 200 -6663 511 107 0 0 chr12 22839963 22840038 -121442451 + L1PB1 LINE L1 634 708 -6155 6605 169 24 7 chr12 22840038 22840115 -121442374 + L1PB1 LINE L1 4530 4604 -2263 2423 92 0 0 chr12 22840115 22840410 -121442079 + AluSc SINE Alu 1 295 -14 6605 169 24 7 chr12 22840410 22842636 -121439853 + L1PB1 LINE L1 4604 6867 0 4648 152 15 42 chr12 22842688 22843609 -121438880 - Tigger1 DNA MER2_type -1522 896 1 21 57 0 0 chr12 22843749 22843784 -121438705 + AT_rich Low_complexity Low_complexity 1 35 0 979 192 67 67 chr12 22844053 22844135 -121438354 + L1 LINE L1 2879 2960 -3186 2214 112 0 3 chr12 22844135 22844430 -121438059 + AluSx SINE Alu 2 295 -17 979 192 67 67 chr12 22844430 22844733 -121437756 + L1 LINE L1 2959 3264 -2882 425 293 178 11 chr12 22844734 22844925 -121437564 + MIR SINE MIR 36 258 -4 855 161 0 0 chr12 22845214 22845338 -121437151 - FLAM_C SINE Alu -19 124 1 745 121 26 0 chr12 22845392 22845508 -121436981 + FLAM_C SINE Alu 18 136 -7 3094 96 18 4 chr12 22846266 22846723 -121435766 + LTR8 LTR ERV1 8 470 -221 639 155 9 9 chr12 22846840 22846956 -121435533 + LTR8 LTR ERV1 469 584 -107 191 312 173 35 chr12 22847118 22847320 -121435169 + L2 LINE L2 2037 2266 -1048 2346 74 0 7 chr12 22847393 22847689 -121434800 - AluSx SINE Alu -1 311 18 4527 161 47 5 chr12 22848273 22849066 -121433423 - LTR1B LTR ERV1 0 826 1 259 238 16 32 chr12 22850283 22850346 -121432143 - L2 LINE L2 -1 3271 3210 1944 139 23 13 chr12 22851240 22851542 -121430947 - AluSx SINE Alu -7 305 1 326 333 82 58 chr12 22851706 22852000 -121430489 + L2 LINE L2 333 633 -2681 2206 114 0 10 chr12 22852697 22852996 -121429493 - AluSx SINE Alu -16 296 1 293 392 39 15 chr12 22853184 22853388 -121429101 - MIR SINE MIR -46 216 8 1917 179 0 0 chr12 22853431 22853738 -121428751 + AluJb SINE Alu 1 307 -5 3239 191 50 42 chr12 22853828 22854647 -121427842 - LTR1B LTR ERV1 0 826 1 514 313 30 12 chr12 22854962 22855128 -121427361 + L3 LINE CR1 988 1156 -421 295 210 0 16 chr12 22855249 22855311 -121427178 + L3 LINE CR1 1229 1289 -288 216 0 0 0 chr12 22855330 22855354 -121427135 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 618 347 25 12 chr12 22855363 22855605 -121426884 + MIR SINE MIR 5 249 -13 1175 130 0 0 chr12 22855613 22855774 -121426715 - AluSg/x SINE Alu -18 292 132 2220 109 3 0 chr12 22855774 22856067 -121426422 - AluSx SINE Alu -18 294 1 270 353 0 0 chr12 22856118 22856203 -121426286 + L3 LINE CR1 1491 1575 -2 26 30 0 0 chr12 22856702 22856735 -121425754 + AT_rich Low_complexity Low_complexity 1 33 0 694 181 0 0 chr12 22856736 22856852 -121425637 - AluJb SINE Alu -196 116 1 998 161 33 0 chr12 22857162 22857342 -121425147 + THE1B LTR MaLR 1 186 -178 250 108 0 0 chr12 22857353 22857390 -121425099 + THE1B LTR MaLR 328 364 0 1651 95 0 0 chr12 22857390 22857631 -121424858 + THE1A-int LTR MaLR 1 241 -1339 6913 91 11 0 chr12 22857642 22858600 -121423889 + THE1A-int LTR MaLR 606 1574 -6 2037 157 14 3 chr12 22858602 22858953 -121423536 + THE1A LTR MaLR 1 355 0 25 31 0 0 chr12 22859088 22859120 -121423369 + AT_rich Low_complexity Low_complexity 1 32 0 2135 188 98 82 chr12 22859541 22860025 -121422464 - LTR8A LTR ERV1 -4 723 223 2385 132 5 24 chr12 22860025 22860396 -121422093 - THE1B LTR MaLR 0 364 1 2135 188 98 82 chr12 22860396 22860592 -121421897 - LTR8A LTR ERV1 -504 223 32 187 271 21 21 chr12 22861470 22861518 -121420971 + MIR SINE MIR 98 145 -63 203 61 30 0 chr12 22861648 22861681 -121420808 + (TC)n Simple_repeat Simple_repeat 1 34 0 226 301 120 6 chr12 22862068 22862251 -121420238 - L1ME4a LINE L1 -72 6049 5846 1963 142 0 14 chr12 22862348 22862644 -121419845 + AluJb SINE Alu 9 300 -12 22 35 0 0 chr12 22862689 22862718 -121419771 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 22862744 22862768 -121419721 + AT_rich Low_complexity Low_complexity 1 24 0 7199 51 7 0 chr12 22865093 22866462 -121416027 - L1PA7 LINE L1 -2 6152 4780 5570 83 0 6 chr12 22866462 22867265 -121415224 + L1PA7 LINE L1 3974 4771 -1375 216 0 0 0 chr12 22867346 22867370 -121415119 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1029 262 88 30 chr12 22868364 22869008 -121413481 + L1M4 LINE L1 4226 4907 -1239 40466 36 24 2 chr12 22869023 22875065 -121407424 + L1PA3 LINE L1 1 6567 -20 3003 42 3 16 chr12 22875065 22875450 -121407039 + L1PA5 LINE L1 5770 6149 -5 40466 36 24 2 chr12 22875450 22875472 -121407017 + L1PA3 LINE L1 6567 6587 0 530 288 48 33 chr12 22875492 22875888 -121406601 + L1M4 LINE L1 4932 5333 -813 3482 167 46 15 chr12 22875949 22876621 -121405868 + L1M1 LINE L1 16 708 -6857 6136 96 29 50 chr12 22876622 22876710 -121405779 + L1M1 LINE L1 2110 2198 -5367 2102 122 0 7 chr12 22876710 22877030 -121405459 - AluSx SINE Alu 0 318 1 6136 96 29 50 chr12 22877030 22877918 -121404571 + L1M1 LINE L1 2198 3103 -4462 2431 78 7 0 chr12 22877918 22878225 -121404264 + AluY SINE Alu 1 309 -2 6136 96 29 50 chr12 22878225 22878316 -121404173 + L1M1 LINE L1 3103 3156 -4409 2022 133 3 3 chr12 22878316 22878602 -121403887 + AluSx SINE Alu 1 286 -26 6136 96 29 50 chr12 22878602 22878673 -121403816 + L1M1 LINE L1 3156 3227 -4338 28946 110 11 67 chr12 22878684 22885206 -121397283 + L1PA7 LINE L1 12 6153 -1 6123 230 52 28 chr12 22885203 22887596 -121394893 + L1ME1 LINE L1 3326 5784 -382 * 1869 209 90 11 chr12 22887596 22888064 -121394425 - MLT1D LTR MaLR 0 505 1 6123 230 52 28 chr12 22888064 22888433 -121394056 + L1ME1 LINE L1 5784 6143 -23 298 243 0 0 chr12 22888499 22888569 -121393920 - L1ME LINE L1 -617 5547 5478 * 313 159 16 16 chr12 22888560 22888623 -121393866 + L1ME LINE L1 5528 5590 -580 852 285 89 47 chr12 22888630 22889125 -121393364 - MLT1F LTR MaLR -11 531 16 342 241 0 117 chr12 22889334 22889479 -121393010 - MLT1F-int LTR MaLR -171 1200 1073 2054 129 0 3 chr12 22889551 22889838 -121392651 - AluSx SINE Alu -21 291 6 264 304 55 17 chr12 22890491 22890672 -121391817 - MLT1F-int LTR MaLR -832 539 352 248 224 0 15 chr12 22890771 22890838 -121391651 - MLT1F-int LTR MaLR -1301 70 5 349 234 123 58 chr12 22890842 22891087 -121391402 - MLT1H1 LTR MaLR 0 555 323 252 310 63 7 chr12 22891304 22891446 -121391043 + HAL1b LINE L1 1187 1336 -12 2027 153 31 0 chr12 22892068 22892362 -121390127 - AluSx SINE Alu -9 303 1 22 0 0 0 chr12 22892521 22892543 -121389946 + AT_rich Low_complexity Low_complexity 1 22 0 283 332 109 26 chr12 22892562 22892791 -121389698 - MIR SINE MIR -12 250 3 439 285 123 47 chr12 22893503 22893911 -121388578 - Charlie8 DNA MER1_type -2143 274 1 4917 33 0 2 chr12 22894462 22895039 -121387450 - L1PA5 LINE L1 -11 6143 5568 418 285 90 62 chr12 22895126 22895382 -121387107 - L2 LINE L2 -20 3293 3031 1642 231 112 50 chr12 22895453 22895875 -121386614 + L1ME1 LINE L1 5458 5937 -229 2065 139 7 0 chr12 22895875 22896170 -121386319 + AluSx SINE Alu 2 298 -14 1642 231 112 50 chr12 22896170 22896410 -121386079 + L1ME1 LINE L1 5937 6161 -5 2121 134 0 0 chr12 22897168 22897467 -121385022 - AluSx SINE Alu -13 299 1 742 134 8 8 chr12 22897492 22897619 -121384870 + THE1C-int LTR MaLR 1454 1580 0 2571 119 0 11 chr12 22897619 22897998 -121384491 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr12 22899754 22899782 -121382707 + AT_rich Low_complexity Low_complexity 1 28 0 2161 106 20 0 chr12 22899785 22900086 -121382403 + AluSp SINE Alu 1 307 -6 421 301 35 38 chr12 22900113 22900429 -121382060 + L1MEd LINE L1 943 1257 -4862 22 0 0 0 chr12 22900475 22900497 -121381992 + AT_rich Low_complexity Low_complexity 1 22 0 230 70 23 23 chr12 22900847 22900890 -121381599 + L1ME2 LINE L1 4989 5031 -1115 24 32 0 0 chr12 22900940 22900971 -121381518 + AT_rich Low_complexity Low_complexity 1 31 0 497 91 0 0 chr12 22900979 22901056 -121381433 - L1MA7 LINE L1 -2 6289 6213 2667 206 105 35 chr12 22901057 22901875 -121380614 + L1ME2 LINE L1 5022 5781 -383 1868 119 129 78 chr12 22901875 22902286 -121380203 - MSTB1 LTR MaLR 0 432 1 2126 116 0 35 chr12 22902288 22902620 -121379869 + AluSx SINE Alu 1 312 0 2667 206 105 35 chr12 22902620 22902751 -121379738 + L1ME2 LINE L1 5781 5901 -263 2496 62 0 3 chr12 22902751 22903056 -121379433 - AluY SINE Alu -7 304 1 2667 206 105 35 chr12 22903056 22903172 -121379317 + L1ME2 LINE L1 5901 6155 -9 592 204 25 45 chr12 22903187 22903344 -121379145 + L1MC4 LINE L1 5425 5578 -2230 1398 253 60 21 chr12 22903380 22903487 -121379002 + L1MC4 LINE L1 7461 7562 -480 2428 71 0 3 chr12 22903487 22903797 -121378692 + AluY SINE Alu 1 309 -2 1398 253 60 21 chr12 22903797 22904219 -121378270 + L1MC4 LINE L1 7562 8011 -31 1873 176 7 0 chr12 22904230 22904526 -121377963 - AluJb SINE Alu -14 298 1 25 65 0 0 chr12 22904535 22904581 -121377908 + AT_rich Low_complexity Low_complexity 1 46 0 1505 98 0 69 chr12 22905314 22905560 -121376929 + MER30 DNA MER1_type 1 229 -1 2928 262 51 52 chr12 22906090 22907214 -121375275 + HsTC2 DNA Tc2 7 1129 -769 25 0 0 0 chr12 22907261 22907286 -121375203 + AT_rich Low_complexity Low_complexity 1 25 0 678 287 33 37 chr12 22907304 22907733 -121374756 - L1M4 LINE L1 -1569 4577 4151 552 30 0 0 chr12 22907789 22907855 -121374634 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 2347 80 7 0 chr12 22907873 22908173 -121374316 - AluY SINE Alu -9 302 1 234 286 50 8 chr12 22908325 22908444 -121374045 - L1M4 LINE L1 -2231 3915 3792 2552 251 74 27 chr12 22908846 22909109 -121373380 + L1ME1 LINE L1 3091 3340 -2806 1601 163 58 34 chr12 22909109 22909403 -121373086 + AluSx SINE Alu 1 301 -11 2552 251 74 27 chr12 22909403 22910217 -121372272 + L1ME1 LINE L1 3340 4219 -1927 783 116 0 36 chr12 22910275 22910404 -121372085 + L1MA1 LINE L1 6014 6139 -163 7624 26 0 1 chr12 22910404 22911737 -121370752 + L1PA4 LINE L1 4821 6152 -3 1236 71 18 6 chr12 22911762 22911932 -121370557 + L1MA1 LINE L1 6131 6302 0 341 194 107 0 chr12 22911950 22912053 -121370436 + L1ME1 LINE L1 5158 5271 -875 2286 231 98 28 chr12 22912187 22912909 -121369580 + L1ME1 LINE L1 5389 6161 -5 9248 168 72 83 chr12 22913177 22914884 -121367605 + L1MC1 LINE L1 6 1730 -4696 2084 145 30 6 chr12 22914884 22915249 -121367240 - THE1C LTR MaLR 0 375 2 9248 168 72 83 chr12 22915249 22916116 -121366373 + L1MC1 LINE L1 1730 2605 -3821 1552 167 28 31 chr12 22916116 22916404 -121366085 + AluJo SINE Alu 12 298 -14 9248 168 72 83 chr12 22916404 22917012 -121365477 + L1MC1 LINE L1 2605 3295 -3131 1800 186 0 0 chr12 22917012 22917313 -121365176 + AluJb SINE Alu 1 301 -11 9248 168 72 83 chr12 22917313 22917400 -121365089 + L1MC1 LINE L1 3295 3381 -3045 5975 142 17 47 chr12 22917387 22918531 -121363958 + L1MC1 LINE L1 5495 6602 -11 * 21 36 0 0 chr12 22918755 22918783 -121363706 + AT_rich Low_complexity Low_complexity 1 28 0 226 307 30 40 chr12 22918838 22918939 -121363550 + MIR3 SINE MIR 78 177 -31 803 236 66 84 chr12 22919232 22919466 -121363023 + L1M1 LINE L1 2718 2955 -4791 794 173 0 0 chr12 22919466 22919599 -121362890 + FLAM_C SINE Alu 1 133 0 803 236 66 84 chr12 22919599 22920059 -121362430 + L1M1 LINE L1 2955 3473 -4273 369 260 0 0 chr12 22920093 22920166 -121362323 + Tigger3(Golem) DNA MER2_type 2 74 -2955 * 2553 132 63 5 chr12 22920163 22920589 -121361900 + Tigger3(Golem) DNA MER2_type 2577 3027 -2 679 258 41 38 chr12 22920589 22920880 -121361609 + L1MEc LINE L1 2211 2502 -3894 1079 252 89 33 chr12 22920999 22921454 -121361035 - MER76 LTR ERV -34 654 101 2312 171 31 19 chr12 22921454 22921875 -121360614 + MSTB LTR MaLR 1 426 0 1079 252 89 33 chr12 22921875 22921983 -121360506 - MER76 LTR ERV -587 101 1 894 271 148 7 chr12 22922020 22922135 -121360354 + L1MEc LINE L1 2551 2648 -3567 2395 164 16 30 chr12 22922135 22922574 -121359915 + Tigger2a DNA MER2_type 1 433 -1 894 271 148 7 chr12 22922574 22922897 -121359592 + L1MEc LINE L1 2648 3051 -3164 3475 160 40 18 chr12 22923215 22923872 -121358617 - LTR51 LTR ERV1 0 671 1 276 233 0 17 chr12 22923872 22923932 -121358557 - MER106B DNA MER1_type -1000 59 1 687 303 26 34 chr12 22923960 22924194 -121358295 - HERVL LTR ERVL -1102 4552 4321 671 350 43 12 chr12 22924270 22924527 -121357962 + ERVL LTR ERVL 4093 4357 -1407 2481 73 3 6 chr12 22927394 22927708 -121354781 + AluSp SINE Alu 1 313 0 243 0 0 0 chr12 22927927 22927954 -121354535 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 816 161 15 0 chr12 22927960 22928097 -121354392 - U1 snRNA snRNA 0 165 27 414 0 0 0 chr12 22931015 22931061 -121351428 + (CA)n Simple_repeat Simple_repeat 2 47 0 855 201 34 57 chr12 22931261 22931470 -121351019 - MER20 DNA MER1_type -9 210 7 800 133 0 0 chr12 22931637 22931757 -121350732 - AluSg/x SINE Alu -1 308 189 21 36 0 0 chr12 22932129 22932157 -121350332 + AT_rich Low_complexity Low_complexity 1 28 0 202 231 0 0 chr12 22932893 22932932 -121349557 + (TATG)n Simple_repeat Simple_repeat 4 42 0 28 0 0 0 chr12 22933571 22933599 -121348890 + AT_rich Low_complexity Low_complexity 1 28 0 236 264 139 0 chr12 22934919 22934991 -121347498 + MIR3 SINE MIR 124 205 -3 267 133 0 0 chr12 22935684 22935729 -121346760 + (GA)n Simple_repeat Simple_repeat 2 46 0 231 258 91 15 chr12 22936342 22936408 -121346081 - MER5A DNA MER1_type 0 189 119 563 198 0 0 chr12 22936746 22936857 -121345632 - L1MA9 LINE L1 -4 6308 6198 202 250 0 52 chr12 22937827 22937923 -121344566 + A-rich Low_complexity Low_complexity 4 94 0 616 151 0 0 chr12 22938133 22938226 -121344263 + AluJ/FLAM SINE Alu 6 98 -214 293 282 146 45 chr12 22939101 22939477 -121343012 + HAL1 LINE L1 672 1085 -1422 304 297 162 66 chr12 22939490 22940126 -121342363 + HAL1 LINE L1 1811 2507 0 22 70 0 0 chr12 22940126 22940169 -121342320 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr12 22940310 22940334 -121342155 + AT_rich Low_complexity Low_complexity 1 24 0 2199 104 30 0 chr12 22940355 22940654 -121341835 + AluSg SINE Alu 1 308 -2 822 258 118 44 chr12 22941026 22941748 -121340741 + L1M4 LINE L1 4540 5314 -832 376 344 52 9 chr12 22941763 22941993 -121340496 + L1ME LINE L1 5257 5496 -666 227 283 159 9 chr12 22942002 22942115 -121340374 + L1ME LINE L1 5510 5639 -482 243 281 63 143 chr12 22942124 22942487 -121340002 + L2 LINE L2 2973 3306 -7 282 238 78 25 chr12 22942500 22942672 -121339817 + L1ME LINE L1 5720 5813 -357 3741 180 98 30 chr12 22942861 22943229 -121339260 - MER21B LTR ERV1 0 863 522 2315 165 23 0 chr12 22943229 22943623 -121338866 + MER57A LTR ERV1 1 403 0 3741 180 98 30 chr12 22943623 22944060 -121338429 - MER21B LTR ERV1 -341 522 3 2087 111 3 13 chr12 22944205 22944503 -121337986 - AluSx SINE Alu -17 295 1 1576 164 68 180 chr12 22945085 22945861 -121336628 + LTR8A LTR ERV1 32 720 -7 327 377 31 21 chr12 22945958 22946149 -121336340 - L2 LINE L2 -214 3058 2866 197 342 13 0 chr12 22946495 22946571 -121335918 - L2 LINE L2 -901 2413 2337 249 283 139 6 chr12 22946646 22946812 -121335677 - L2 LINE L2 -1228 2086 1899 500 328 41 6 chr12 22947302 22947473 -121335016 - MIR SINE MIR -71 191 15 957 257 152 19 chr12 22947800 22948115 -121334374 - L2 LINE L2 0 3313 2957 402 332 47 14 chr12 22948400 22948611 -121333878 + MLT1J2 LTR MaLR 233 450 0 694 353 98 38 chr12 22948732 22949257 -121333232 + L2 LINE L2 2715 3272 0 828 257 23 0 chr12 22950024 22950199 -121332290 + MIR SINE MIR 59 237 -25 296 48 24 0 chr12 22950217 22950259 -121332230 + (CAT)n Simple_repeat Simple_repeat 3 45 0 2042 129 7 0 chr12 22950539 22950826 -121331663 + AluSx SINE Alu 6 294 -18 1968 138 0 0 chr12 22950828 22951104 -121331385 + AluSx SINE Alu 1 276 -36 225 0 0 0 chr12 22951105 22951130 -121331359 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 977 109 0 141 chr12 22951130 22951353 -121331136 + AluSg/x SINE Alu 128 312 0 23 78 0 0 chr12 22951650 22951701 -121330788 + AT_rich Low_complexity Low_complexity 1 51 0 260 336 10 0 chr12 22953714 22953818 -121328671 + GA-rich Low_complexity Low_complexity 2 106 0 25 65 0 0 chr12 22954559 22954605 -121327884 + AT_rich Low_complexity Low_complexity 1 46 0 267 133 0 0 chr12 22955106 22955151 -121327338 + (TA)n Simple_repeat Simple_repeat 2 46 0 481 208 81 52 chr12 22956394 22956567 -121325922 - L1ME LINE L1 -423 5698 5521 28 0 0 0 chr12 22956780 22956808 -121325681 + AT_rich Low_complexity Low_complexity 1 28 0 1299 137 5 10 chr12 22956809 22957013 -121325476 - AluSg/x SINE Alu -18 294 92 312 136 0 0 chr12 22957013 22957057 -121325432 - Alu SINE Alu -258 44 1 1415 233 33 35 chr12 22957322 22957747 -121324742 + MLT1C LTR MaLR 42 465 -2 881 279 38 32 chr12 22958011 22958351 -121324138 + MER93a LTR ERV1 61 402 0 494 257 47 0 chr12 22958351 22958494 -121323995 - MER63 DNA MER1_type -56 780 5 495 286 33 29 chr12 22958770 22959011 -121323478 - HAL1b LINE L1 -922 426 185 198 0 0 0 chr12 22959425 22959447 -121323042 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2152 113 3 0 chr12 22959454 22959736 -121322753 - AluSc SINE Alu -26 283 1 2271 83 6 19 chr12 22959785 22960099 -121322390 + AluSg SINE Alu 1 310 0 267 339 73 9 chr12 22960999 22961108 -121321381 - L2 LINE L2 -14 3258 3143 2308 103 0 0 chr12 22961266 22961566 -121320923 + AluSg SINE Alu 1 300 -10 530 294 65 85 chr12 22961616 22961827 -121320662 - L2 LINE L2 -644 2670 2456 1909 170 3 0 chr12 22961827 22962133 -121320356 + AluJo SINE Alu 1 307 -5 530 294 65 85 chr12 22962133 22962380 -121320109 - L2 LINE L2 -858 2456 2221 300 189 45 9 chr12 22963571 22963682 -121318807 + (TA)n Simple_repeat Simple_repeat 2 116 0 2310 58 0 0 chr12 22964055 22964329 -121318160 - AluY SINE Alu -1 310 37 736 257 125 21 chr12 22964437 22964717 -121317772 - LTR50 LTR ERVL -486 309 1 1263 268 100 35 chr12 22964719 22965178 -121317311 - L2 LINE L2 -657 2657 2169 1218 112 22 0 chr12 22965178 22965356 -121317133 + AluSc SINE Alu 128 309 0 431 290 65 0 chr12 22965356 22965494 -121316995 - L2 LINE L2 -1256 2058 1912 939 210 46 37 chr12 22965500 22965848 -121316641 + HAL1 LINE L1 1280 1630 -877 338 247 93 26 chr12 22966159 22966283 -121316206 + MIR SINE MIR 37 166 -62 29 60 0 0 chr12 22966420 22966470 -121316019 + AT_rich Low_complexity Low_complexity 1 50 0 2268 115 0 0 chr12 22966470 22966765 -121315724 + AluSx SINE Alu 1 295 -17 1324 245 162 17 chr12 22966769 22967361 -121315128 - HsTC2c DNA Tc2 -51 678 1 259 200 17 17 chr12 22967515 22967575 -121314914 + (TG)n Simple_repeat Simple_repeat 2 61 0 25 51 0 0 chr12 22967753 22967792 -121314697 + AT_rich Low_complexity Low_complexity 1 39 0 249 108 0 0 chr12 22968385 22968422 -121314067 + (CA)n Simple_repeat Simple_repeat 1 37 0 1573 165 27 54 chr12 22969599 22969896 -121312593 - AluJo SINE Alu -23 289 1 418 306 68 38 chr12 22970010 22970275 -121312214 - L1ME4a LINE L1 -213 5891 5619 257 263 17 0 chr12 22970310 22970428 -121312061 - L1ME4a LINE L1 -2889 3240 3121 286 296 13 9 chr12 22970461 22970578 -121311911 + MLT1G1-int LTR MaLR 1251 1734 0 812 262 52 39 chr12 22970578 22971096 -121311393 + MLT1G1 LTR MaLR 1 501 -54 334 301 55 14 chr12 22971455 22971674 -121310815 - L1MEc LINE L1 -4736 1529 1168 545 257 145 50 chr12 22971824 22972322 -121310167 - L1MEc LINE L1 -5010 1109 565 273 202 269 0 chr12 22972643 22972747 -121309742 - MIR SINE MIR -65 197 66 900 152 111 12 chr12 22973471 22973534 -121308955 - AluJb SINE Alu -12 300 245 294 29 0 0 chr12 22973534 22973569 -121308920 + (CCCTAA)n Simple_repeat Simple_repeat 3 37 0 900 152 111 12 chr12 22973569 22973676 -121308813 - AluJb SINE Alu -67 245 113 2317 135 13 8 chr12 22973699 22974091 -121308398 + MSTA LTR MaLR 1 394 -34 698 46 0 0 chr12 22974091 22974178 -121308311 - AluY SINE Alu -8 303 217 503 307 18 26 chr12 22974375 22974603 -121307886 + Charlie2b DNA MER1_type 88 313 -2549 324 262 37 0 chr12 22974600 22974707 -121307782 + Charlie2b DNA MER1_type 556 666 -2116 * 266 213 229 16 chr12 22974842 22974964 -121307525 + Charlie2a DNA MER1_type 1512 1659 -1203 349 145 14 0 chr12 22975093 22975162 -121307327 + L1PB4 LINE L1 6084 6153 -3 2158 109 7 0 chr12 22976242 22976535 -121305954 + AluSq SINE Alu 1 295 -18 36 0 0 0 chr12 22976942 22976978 -121305511 + AT_rich Low_complexity Low_complexity 1 36 0 1537 147 24 4 chr12 22976991 22977243 -121305246 - AluJb SINE Alu -54 258 2 721 260 67 64 chr12 22977252 22977895 -121304594 - L1M4 LINE L1 -1134 5012 4368 3699 189 79 5 chr12 22978076 22978844 -121303645 + MER21B LTR ERV1 1 825 -38 525 257 76 53 chr12 22978906 22979077 -121303412 + MER21B LTR ERV1 1 175 -688 501 279 71 31 chr12 22979174 22979400 -121303089 + MIR SINE MIR 15 249 -13 444 112 0 34 chr12 22979557 22979646 -121302843 + (TCCC)n Simple_repeat Simple_repeat 3 88 0 373 256 0 17 chr12 22979837 22979954 -121302535 + L1MD1 LINE L1 6128 6242 0 22 70 0 0 chr12 22980235 22980278 -121302211 + AT_rich Low_complexity Low_complexity 1 43 0 257 238 113 0 chr12 22980515 22980595 -121301894 + L1MC/D LINE L1 5510 5598 -2210 219 170 0 0 chr12 22980994 22981041 -121301448 + (TATAA)n Simple_repeat Simple_repeat 4 50 0 2486 74 0 6 chr12 22981701 22982012 -121300477 - AluY SINE Alu -2 309 1 261 0 0 0 chr12 22982022 22982051 -121300438 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 403 310 64 35 chr12 22982677 22982880 -121299609 + MIR SINE MIR 43 251 -11 328 322 94 22 chr12 22985581 22985761 -121296728 - MIR3 SINE MIR -5 203 11 208 271 53 66 chr12 22985724 22985875 -121296614 + L2 LINE L2 2066 2214 -1100 * 2306 267 132 70 chr12 22989463 22989715 -121292774 - L2 LINE L2 -1 3312 3077 1885 143 7 40 chr12 22989715 22990016 -121292473 - AluSx SINE Alu -21 291 1 2306 267 132 70 chr12 22990016 22991147 -121291342 - L2 LINE L2 -236 3077 1836 240 198 111 37 chr12 22991826 22991907 -121290582 - L2 LINE L2 -1 3312 3226 2448 60 7 3 chr12 22991957 22992258 -121290231 - AluY SINE Alu -9 302 1 1872 174 13 7 chr12 22992640 22992950 -121289539 - AluJb SINE Alu 0 312 1 24 32 0 0 chr12 22993222 22993253 -121289236 + AT_rich Low_complexity Low_complexity 1 31 0 1489 133 0 9 chr12 22993367 22993585 -121288904 - AluJb SINE Alu -10 302 87 1976 90 65 7 chr12 22993643 22993921 -121288568 - AluSx SINE Alu -18 294 1 472 284 28 7 chr12 22994334 22994475 -121288014 - L2 LINE L2 -5 3308 3165 249 267 0 0 chr12 22994501 22994546 -121287943 - L2 LINE L2 -257 3056 3012 427 257 223 10 chr12 22997922 22998124 -121284365 + MIR SINE MIR 17 261 -1 29 0 0 0 chr12 22998981 22999010 -121283479 + AT_rich Low_complexity Low_complexity 1 29 0 1587 174 31 31 chr12 22999010 22999298 -121283191 + AluJo SINE Alu 1 288 -24 414 143 0 0 chr12 22999305 22999382 -121283107 + (CA)n Simple_repeat Simple_repeat 2 78 0 270 222 0 63 chr12 22999557 22999620 -121282869 - L2 LINE L2 -7 3306 3248 327 285 76 35 chr12 23000197 23000341 -121282148 + MER5A DNA MER1_type 38 187 -2 295 194 19 93 chr12 23000811 23000919 -121281570 - MER102a DNA MER1_type 0 330 231 2243 91 15 76 chr12 23000922 23001316 -121281173 - THE1C LTR MaLR 0 375 6 399 217 8 33 chr12 23001366 23001486 -121281003 - MER102a DNA MER1_type -148 182 66 384 259 38 8 chr12 23002011 23002142 -121280347 - L1ME LINE L1 -297 5824 5690 450 305 86 10 chr12 23002653 23002850 -121279639 + MIR SINE MIR 47 258 -4 24 103 0 0 chr12 23002987 23003074 -121279415 + AT_rich Low_complexity Low_complexity 1 87 0 1004 219 0 0 chr12 23003102 23003303 -121279186 + L1PB4 LINE L1 5949 6149 -7 464 244 83 57 chr12 23003970 23004163 -121278326 + MIR SINE MIR 63 260 -2 2117 206 30 8 chr12 23005590 23006092 -121276397 + LTR27 LTR ERV1 12 501 0 185 0 40 0 chr12 23006239 23006264 -121276225 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 638 366 81 25 chr12 23006265 23006934 -121275555 - L2 LINE L2 -13 3259 2550 225 182 15 76 chr12 23007307 23007373 -121275116 - L2 LINE L2 -2 3311 3250 285 366 98 5 chr12 23007570 23007764 -121274725 - L2 LINE L2 -213 3059 2848 2084 123 3 3 chr12 23007764 23008056 -121274433 + AluSx SINE Alu 1 292 -20 21 71 0 0 chr12 23009226 23009268 -121273221 + AT_rich Low_complexity Low_complexity 1 42 0 2291 108 10 0 chr12 23009859 23010156 -121272333 - AluSq SINE Alu -10 303 4 198 348 181 23 chr12 23010161 23010460 -121272029 - L2 LINE L2 -675 2639 2294 338 247 0 35 chr12 23010477 23010562 -121271927 + L2 LINE L2 3229 3310 -3 231 367 42 39 chr12 23013673 23013904 -121268585 - MIR SINE MIR -14 248 23 1603 178 0 88 chr12 23014193 23014535 -121267954 + AluJb SINE Alu 1 312 0 556 300 47 6 chr12 23014678 23014848 -121267641 + MIR SINE MIR 31 207 -55 304 305 5 0 chr12 23014901 23014994 -121267495 + MLT1J2 LTR MaLR 64 142 -308 2072 127 13 13 chr12 23018082 23018389 -121264100 + AluSx SINE Alu 1 307 -5 295 383 11 34 chr12 23018394 23018569 -121263920 - MIR SINE MIR -56 206 36 185 282 70 0 chr12 23020383 23020454 -121262035 + L2 LINE L2 1903 1978 -1336 234 269 77 0 chr12 23020774 23020852 -121261637 + MIR SINE MIR 16 99 -109 948 136 107 0 chr12 23021400 23021540 -121260949 - FRAM SINE Alu -24 152 1 283 177 149 139 chr12 23021739 23021935 -121260554 - MIR SINE MIR -60 148 1 191 339 0 16 chr12 23022088 23022150 -121260339 - MIR SINE MIR -155 107 47 274 340 52 13 chr12 23022295 23022448 -121260041 - MIR SINE MIR -33 229 71 313 269 11 0 chr12 23022832 23022925 -121259564 + (TAG)n Simple_repeat Simple_repeat 1 94 0 29 0 0 0 chr12 23024440 23024469 -121258020 + AT_rich Low_complexity Low_complexity 1 29 0 737 234 37 46 chr12 23024771 23024989 -121257500 + L2 LINE L2 3089 3304 -9 2311 144 33 0 chr12 23024989 23025384 -121257105 + L1PA16 LINE L1 5738 6145 -21 200 119 24 48 chr12 23025394 23025436 -121257053 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1096 240 178 53 chr12 23027480 23027764 -121254725 - L2 LINE L2 0 3313 2955 1443 245 70 40 chr12 23027764 23027943 -121254546 - MER34 LTR ERV1 0 542 370 1809 158 21 18 chr12 23027943 23028228 -121254261 + AluJo SINE Alu 1 286 -26 1443 245 70 40 chr12 23028228 23028574 -121253915 - MER34 LTR ERV1 -172 370 1 1096 240 178 53 chr12 23028574 23028722 -121253767 - L2 LINE L2 -358 2955 2827 4402 174 47 5 chr12 23030229 23031023 -121251466 + MER21B LTR ERV1 1 827 -36 3908 111 61 52 chr12 23031562 23032443 -121250046 + MER4A-int LTR ERV1 2793 3681 -2917 * 16228 99 37 18 chr12 23032442 23035150 -121247339 + MER4A-int LTR ERV1 3837 6596 -2 586 120 0 20 chr12 23035158 23035258 -121247231 + MER4A LTR ERV1 1 98 -566 1666 125 12 31 chr12 23035258 23035610 -121246879 + MER4A LTR ERV1 261 664 0 10575 105 109 81 chr12 23035613 23036339 -121246150 + MER4A-int LTR ERV1 1 705 -5893 378 0 0 0 chr12 23036339 23036381 -121246108 + (CA)n Simple_repeat Simple_repeat 1 42 0 10575 105 109 81 chr12 23036381 23037872 -121244617 + MER4A-int LTR ERV1 705 2293 -4305 2294 110 0 0 chr12 23037872 23038173 -121244316 - AluSx SINE Alu -11 301 1 10575 105 109 81 chr12 23038173 23038382 -121244107 + MER4A-int LTR ERV1 2293 2495 -4103 1052 125 155 10 chr12 23038382 23038582 -121243907 - LTR8 LTR ERV1 -434 257 29 * 1654 115 4 19 chr12 23038577 23038837 -121243652 + MER4A LTR ERV1 409 664 0 1827 274 119 25 chr12 23038847 23039943 -121242546 - HAL1 LINE L1 -760 1747 550 274 242 30 85 chr12 23040165 23040330 -121242159 - HAL1 LINE L1 -2310 197 42 768 177 0 0 chr12 23040457 23040581 -121241908 - FLAM_A SINE Alu -8 125 2 440 316 109 38 chr12 23040874 23041434 -121241055 + L2 LINE L2 1552 2151 -1163 4161 147 50 3 chr12 23041577 23042263 -121240226 + MER72 LTR ERV1 5 722 0 354 221 195 20 chr12 23042328 23042477 -121240012 - MIR SINE MIR -10 252 78 362 244 181 19 chr12 23042555 23042715 -121239774 + MIR SINE MIR 67 252 -10 378 326 45 23 chr12 23043609 23043741 -121238748 - L2 LINE L2 0 3272 3138 24 53 0 0 chr12 23045206 23045244 -121237245 + AT_rich Low_complexity Low_complexity 1 38 0 621 319 14 9 chr12 23045536 23045752 -121236737 + MIR SINE MIR 15 231 -31 180 0 0 0 chr12 23048262 23048282 -121234207 + (A)n Simple_repeat Simple_repeat 1 20 0 952 117 7 0 chr12 23048341 23048486 -121234003 + L1PA10 LINE L1 6018 6163 -5 413 311 135 23 chr12 23048662 23049062 -121233427 + L1ME4a LINE L1 4633 5070 -1076 313 319 36 40 chr12 23049071 23049322 -121233167 + L1ME4a LINE L1 5111 5360 -786 226 362 72 5 chr12 23049353 23049560 -121232929 + L1ME4a LINE L1 5444 5664 -2144 1695 205 79 90 chr12 23049807 23050339 -121232150 - MLT1F1 LTR MaLR -7 560 10 367 261 108 0 chr12 23050414 23050525 -121231964 - MER94 DNA DNA 0 134 12 249 229 0 0 chr12 23050526 23050587 -121231902 + L1ME4a LINE L1 5957 6017 -104 22 0 0 0 chr12 23050645 23050667 -121231822 + AT_rich Low_complexity Low_complexity 1 22 0 341 297 0 7 chr12 23051363 23051542 -121230947 + MIR SINE MIR 38 256 -6 * 413 276 103 43 chr12 23051529 23051714 -121230775 + MIR SINE MIR 54 249 -13 264 259 19 0 chr12 23051801 23051855 -121230634 + L2 LINE L2 3210 3264 -8 333 194 0 21 chr12 23052591 23052684 -121229805 + L1MA4 LINE L1 6210 6300 0 1683 106 96 18 chr12 23053055 23053337 -121229152 + AluJo SINE Alu 1 304 -8 1226 44 11 22 chr12 23053346 23053526 -121228963 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 202 182 18 36 chr12 23053672 23053727 -121228762 + GA-rich Low_complexity Low_complexity 2 55 0 397 282 10 10 chr12 23054797 23054900 -121227589 + L2 LINE L2 3170 3272 0 4577 88 13 0 chr12 23055889 23056522 -121225967 + L1PA11 LINE L1 5534 6174 0 295 245 46 61 chr12 23056568 23056764 -121225725 + L1ME4a LINE L1 5705 5897 -224 336 252 34 27 chr12 23056855 23057002 -121225487 + L1ME LINE L1 5678 5825 -296 363 306 38 33 chr12 23057348 23057531 -121224958 + L1ME4a LINE L1 5770 5953 -168 6678 74 7 0 chr12 23157877 23159652 -121122837 + L1PA13 LINE L1 4387 6163 0 313 339 61 28 chr12 23159652 23159832 -121122657 + L1M4 LINE L1 2966 3151 -2995 903 231 17 27 chr12 23159886 23160184 -121122305 + L1MEc LINE L1 1999 2293 -4103 2944 251 70 30 chr12 23160281 23160715 -121121774 + L1MEc LINE L1 2243 2658 -3557 1955 149 0 3 chr12 23160715 23161011 -121121478 + AluSx SINE Alu 4 298 -14 2944 251 70 30 chr12 23161011 23161859 -121120630 + L1MEc LINE L1 2658 3751 -2464 2669 106 17 5 chr12 23161841 23162257 -121120232 + L1P5 LINE L1 5369 5789 -367 * 221 115 0 19 chr12 23162263 23162315 -121120174 + (TA)n Simple_repeat Simple_repeat 2 52 0 319 237 0 52 chr12 23162315 23162412 -121120077 + L1MC4 LINE L1 6612 6703 -1339 860 103 0 32 chr12 23162413 23162722 -121119767 + (TA)n Simple_repeat Simple_repeat 2 300 0 327 303 0 0 chr12 23162725 23162814 -121119675 + L1MC4 LINE L1 6614 6702 -1340 317 300 0 0 chr12 23162815 23162905 -121119584 + L1MC4 LINE L1 6614 6703 -1339 225 35 0 0 chr12 23162927 23162956 -121119533 - L1MC/D LINE L1 -421 5821 5793 180 0 0 0 chr12 23162956 23162976 -121119513 + (TG)n Simple_repeat Simple_repeat 2 21 0 225 98 0 0 chr12 23163000 23163041 -121119448 - LTR66 LTR ERVL -172 438 398 * 266 70 0 0 chr12 23163010 23163053 -121119436 + LTR66 LTR ERVL 399 441 -169 2317 127 6 6 chr12 23163083 23163096 -121119393 + L1PB4 LINE L1 5782 5794 -362 204 40 0 0 chr12 23163096 23163121 -121119368 + (CA)n Simple_repeat Simple_repeat 2 26 0 2317 127 6 6 chr12 23163121 23163469 -121119020 + L1PB4 LINE L1 5793 6143 -13 1253 256 24 34 chr12 23163478 23163977 -121118512 + L1ME1 LINE L1 3131 3624 -2522 * 3930 229 74 40 chr12 23163975 23166244 -121116245 + L1ME1 LINE L1 3825 6159 -7 3006 245 70 15 chr12 23166355 23167341 -121115148 + L1PB1 LINE L1 6 1045 -5818 5219 198 17 5 chr12 23167346 23172438 -121110051 + L1PB1 LINE L1 1094 6515 -352 316 71 36 0 chr12 23172438 23172494 -121109995 + (TA)n Simple_repeat Simple_repeat 2 59 0 5219 198 17 5 chr12 23172494 23172851 -121109638 + L1PB1 LINE L1 6515 6866 -1 24 53 0 0 chr12 23172851 23172889 -121109600 + AT_rich Low_complexity Low_complexity 1 38 0 1548 242 163 16 chr12 23173696 23173976 -121108513 - MLT1E2 LTR MaLR 0 626 388 2116 95 29 10 chr12 23173976 23174282 -121108207 - AluSx SINE Alu 0 312 1 1548 242 163 16 chr12 23174282 23174547 -121107942 - MLT1E2 LTR MaLR -238 388 1 22 56 0 0 chr12 23174666 23174702 -121107787 + AT_rich Low_complexity Low_complexity 1 36 0 4506 134 34 5 chr12 23174707 23175477 -121107012 + L1MA8 LINE L1 5497 6288 -3 353 146 53 6 chr12 23175487 23175658 -121106831 + (TA)n Simple_repeat Simple_repeat 2 180 0 204 147 40 0 chr12 23175677 23175752 -121106737 + (TA)n Simple_repeat Simple_repeat 1 78 0 604 212 119 7 chr12 23176642 23176793 -121105696 + L1ME1 LINE L1 5987 6154 -12 215 219 0 0 chr12 23177626 23177667 -121104822 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 669 263 120 14 chr12 23177777 23177994 -121104495 + MIR SINE MIR 23 262 0 449 179 151 9 chr12 23178039 23178145 -121104344 + L2 LINE L2 3189 3309 -4 245 250 0 0 chr12 23178211 23178263 -121104226 + L2 LINE L2 3262 3313 0 28 48 0 0 chr12 23178349 23178391 -121104098 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr12 23179219 23179247 -121103242 + AT_rich Low_complexity Low_complexity 1 28 0 636 300 130 32 chr12 23179754 23180377 -121102112 + L1ME2 LINE L1 5279 5960 -161 907 305 34 29 chr12 23180399 23180809 -121101680 + L1MC4a LINE L1 5566 5977 -1831 21 95 0 0 chr12 23180978 23181041 -121101448 + AT_rich Low_complexity Low_complexity 1 63 0 224 325 140 9 chr12 23181311 23181425 -121101064 + MIR SINE MIR 18 146 -62 386 168 288 0 chr12 23181657 23181782 -121100707 - MIR SINE MIR 0 262 102 722 194 0 0 chr12 23182552 23182676 -121099813 + FLAM_A SINE Alu 1 124 -9 24 32 0 0 chr12 23183133 23183164 -121099325 + AT_rich Low_complexity Low_complexity 1 31 0 327 204 18 133 chr12 23184004 23184117 -121098372 - MIR SINE MIR -110 152 53 563 318 74 52 chr12 23184239 23184660 -121097829 + L2 LINE L2 2871 3300 -13 24 0 0 0 chr12 23185062 23185086 -121097403 + AT_rich Low_complexity Low_complexity 1 24 0 2001 136 0 0 chr12 23185471 23185751 -121096738 - AluSx SINE Alu -32 280 1 238 266 31 16 chr12 23185806 23185870 -121096619 - L2 LINE L2 0 3313 3249 25 0 0 0 chr12 23186614 23186639 -121095850 + AT_rich Low_complexity Low_complexity 1 25 0 683 264 98 13 chr12 23187473 23187702 -121094787 - MIR SINE MIR 0 262 20 2097 112 3 7 chr12 23190350 23190645 -121091844 - AluSq SINE Alu -19 294 1 249 289 47 31 chr12 23191356 23191484 -121091005 + L1ME4a LINE L1 5977 6106 -15 926 226 197 52 chr12 23192489 23192571 -121089918 + MSTD LTR MaLR 2 71 -325 1673 170 13 3 chr12 23192571 23192871 -121089618 + AluJb SINE Alu 1 303 -9 2173 100 0 17 chr12 23192871 23193172 -121089317 + AluSx SINE Alu 1 296 -16 926 226 197 52 chr12 23193172 23193433 -121089056 + MSTD LTR MaLR 70 396 0 22 0 0 0 chr12 23194508 23194530 -121087959 + AT_rich Low_complexity Low_complexity 1 22 0 1397 153 131 8 chr12 23196936 23197204 -121085285 - AluJo SINE Alu 0 302 2 363 272 122 14 chr12 23197302 23197449 -121085040 - MIR3 SINE MIR 0 208 46 1750 177 3 0 chr12 23197990 23198284 -121084205 - AluJo SINE Alu -17 295 1 21 36 0 0 chr12 23198799 23198827 -121083662 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 23199601 23199624 -121082865 + AT_rich Low_complexity Low_complexity 1 23 0 322 309 0 32 chr12 23199721 23199844 -121082645 + MIR SINE MIR 129 247 -15 24 0 0 0 chr12 23201285 23201309 -121081180 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 23201858 23201887 -121080602 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr12 23202984 23203006 -121079483 + AT_rich Low_complexity Low_complexity 1 22 0 728 237 34 17 chr12 23203413 23203590 -121078899 - MER5A DNA MER1_type -9 180 1 27 29 0 0 chr12 23204383 23204417 -121078072 + AT_rich Low_complexity Low_complexity 1 34 0 204 182 91 0 chr12 23206296 23206340 -121076149 + L2 LINE L2 3265 3312 -1 225 217 14 43 chr12 23206371 23206440 -121076049 - L2 LINE L2 -94 3219 3153 1073 199 142 0 chr12 23206821 23207102 -121075387 - MER33 DNA MER1_type 0 324 4 551 27 27 0 chr12 23207283 23207356 -121075133 - L1PA4 LINE L1 -3 6152 6078 344 284 229 25 chr12 23207651 23207767 -121074722 - L2 LINE L2 -1 3312 3221 342 61 0 0 chr12 23207767 23207816 -121074673 + (CA)n Simple_repeat Simple_repeat 2 50 0 344 284 229 25 chr12 23207816 23207974 -121074515 - L2 LINE L2 -92 3221 2982 2237 123 0 0 chr12 23208330 23208640 -121073849 + AluSx SINE Alu 1 310 -2 2148 116 0 0 chr12 23208845 23209138 -121073351 - AluSx SINE Alu -17 295 3 32 57 0 0 chr12 23209147 23209200 -121073289 + AT_rich Low_complexity Low_complexity 1 53 0 24 53 0 0 chr12 23209446 23209484 -121073005 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr12 23209698 23209721 -121072768 + AT_rich Low_complexity Low_complexity 1 23 0 278 346 46 8 chr12 23209963 23210093 -121072396 + MIR SINE MIR 17 151 -111 1929 149 0 7 chr12 23210570 23210871 -121071618 - AluJb SINE Alu -13 299 1 1258 167 121 39 chr12 23211416 23211698 -121070791 - AluJb SINE Alu -7 305 1 935 181 75 25 chr12 23211831 23212030 -121070459 + MER20 DNA MER1_type 11 219 0 1649 101 47 0 chr12 23212696 23212953 -121069536 + L1MA2 LINE L1 6035 6303 -1 560 249 120 31 chr12 23213162 23213439 -121069050 + L1MEc LINE L1 1799 2064 -4476 1005 303 157 12 chr12 23213445 23214013 -121068476 - L2 LINE L2 -767 2547 1898 25 51 0 0 chr12 23214656 23214695 -121067794 + AT_rich Low_complexity Low_complexity 1 39 0 991 75 48 0 chr12 23215056 23215202 -121067287 + L1MA2 LINE L1 5980 6132 -172 325 111 0 0 chr12 23215202 23215254 -121067235 + L1MA3 LINE L1 6252 6305 0 26 64 0 0 chr12 23215265 23215312 -121067177 + AT_rich Low_complexity Low_complexity 1 47 0 227 294 82 0 chr12 23215601 23215686 -121066803 + L1ME4a LINE L1 5992 6083 -38 7359 27 16 0 chr12 23216642 23217971 -121064518 + L1PA4 LINE L1 4812 6154 -1 2142 126 0 13 chr12 23218633 23218942 -121063547 - AluSx SINE Alu -7 305 1 198 118 0 0 chr12 23219073 23219107 -121063382 + (TA)n Simple_repeat Simple_repeat 1 34 0 1243 225 51 30 chr12 23219107 23219440 -121063049 - MER2 DNA MER2_type 0 345 6 24 0 0 0 chr12 23220533 23220557 -121061932 + AT_rich Low_complexity Low_complexity 1 24 0 2090 138 0 0 chr12 23221358 23221656 -121060833 + AluSg SINE Alu 1 298 -12 540 265 41 27 chr12 23222755 23222902 -121059587 - MIR SINE MIR -111 151 3 67 73 0 0 chr12 23226365 23226502 -121055987 + AT_rich Low_complexity Low_complexity 1 137 0 1279 130 41 12 chr12 23226957 23227203 -121055286 + L1MA4A LINE L1 6045 6297 -6 408 88 0 0 chr12 23227652 23227709 -121054780 + (CA)n Simple_repeat Simple_repeat 2 58 0 272 344 33 11 chr12 23228041 23228131 -121054358 + L2 LINE L2 3176 3267 -5 731 290 92 0 chr12 23229089 23229306 -121053183 + MIR SINE MIR 15 251 -11 283 357 56 0 chr12 23229308 23229434 -121053055 + L2 LINE L2 2564 2696 -618 2054 122 14 0 chr12 23229674 23229962 -121052527 + AluSx SINE Alu 3 294 -18 322 323 132 36 chr12 23230217 23230437 -121052052 + L2 LINE L2 2994 3234 -38 23 92 0 0 chr12 23231764 23231829 -121050660 + AT_rich Low_complexity Low_complexity 1 65 0 1869 162 0 3 chr12 23233279 23233576 -121048913 - AluSx SINE Alu -14 298 3 2304 86 0 19 chr12 23234061 23234374 -121048115 - AluSx SINE Alu -5 307 1 26 30 0 0 chr12 23234903 23234936 -121047553 + AT_rich Low_complexity Low_complexity 1 33 0 1500 82 5 0 chr12 23235013 23235207 -121047282 - AluSq SINE Alu -2 311 117 438 139 16 131 chr12 23235950 23236072 -121046417 - FLAM_A SINE Alu -34 108 1 2726 10 0 7 chr12 23238638 23238944 -121043545 - AluYb8 SINE Alu -14 304 1 292 214 222 24 chr12 23239432 23239558 -121042931 - MIR SINE MIR -4 258 108 2236 116 0 0 chr12 23239690 23239992 -121042497 + AluSq SINE Alu 2 303 -10 334 214 0 0 chr12 23240482 23240552 -121041937 + MER103 DNA DNA 1 70 -96 665 190 0 0 chr12 23240615 23240731 -121041758 + FLAM_C SINE Alu 1 116 -17 27 62 0 0 chr12 23242675 23242723 -121039766 + AT_rich Low_complexity Low_complexity 1 48 0 31 0 0 0 chr12 23244516 23244547 -121037942 + AT_rich Low_complexity Low_complexity 1 31 0 23 86 0 0 chr12 23246112 23246170 -121036319 + AT_rich Low_complexity Low_complexity 1 58 0 191 36 36 0 chr12 23246407 23246435 -121036054 + (TAA)n Simple_repeat Simple_repeat 2 30 0 35 88 0 0 chr12 23246997 23247088 -121035401 + AT_rich Low_complexity Low_complexity 1 91 0 22 0 0 0 chr12 23248576 23248598 -121033891 + AT_rich Low_complexity Low_complexity 1 22 0 745 231 90 33 chr12 23251759 23251971 -121030518 + MER58A DNA MER1_type 1 224 0 274 155 190 0 chr12 23252333 23252391 -121030098 + MER58B DNA MER1_type 269 337 -4 2002 148 0 3 chr12 23252697 23253002 -121029487 + AluJb SINE Alu 1 304 -8 28 61 0 0 chr12 23253010 23253059 -121029430 + AT_rich Low_complexity Low_complexity 1 49 0 230 286 0 14 chr12 23253488 23253558 -121028931 - MIR3 SINE MIR -7 201 133 231 246 24 32 chr12 23253592 23253718 -121028771 + (TA)n Simple_repeat Simple_repeat 2 126 0 21 36 0 0 chr12 23253722 23253750 -121028739 + AT_rich Low_complexity Low_complexity 1 28 0 207 316 26 61 chr12 23253888 23254002 -121028487 - MIR3 SINE MIR -93 115 6 227 191 0 21 chr12 23255566 23255613 -121026876 + Tigger5 DNA MER2_type 17 62 -2261 * 1333 146 65 4 chr12 23255611 23255858 -121026631 + Tigger5 DNA MER2_type 2062 2323 0 591 284 107 5 chr12 23256058 23256273 -121026216 - MIR SINE MIR -9 253 17 663 151 9 0 chr12 23256356 23256462 -121026027 + FLAM_C SINE Alu 1 107 -36 745 212 7 0 chr12 23256664 23256801 -121025688 + AluSx SINE Alu 27 164 -148 22 35 0 0 chr12 23257028 23257057 -121025432 + AT_rich Low_complexity Low_complexity 1 29 0 182 37 37 0 chr12 23257071 23257098 -121025391 + (TA)n Simple_repeat Simple_repeat 2 29 0 2223 84 49 0 chr12 23257098 23257384 -121025105 - AluSp SINE Alu -13 300 1 188 318 71 24 chr12 23258180 23258265 -121024224 - L2 LINE L2 -21 3292 3204 683 349 42 47 chr12 23258273 23258680 -121023809 - L3 LINE CR1 -422 1155 751 354 240 66 79 chr12 23258689 23258993 -121023496 + L1MC5 LINE L1 7640 7939 -22 262 154 0 0 chr12 23259453 23259492 -121022997 + MLT1J LTR MaLR 100 138 -373 233 283 40 30 chr12 23259731 23259830 -121022659 + MLT1J LTR MaLR 358 457 -54 446 235 8 8 chr12 23259843 23260085 -121022404 + (TA)n Simple_repeat Simple_repeat 1 242 0 2064 138 3 0 chr12 23260227 23260523 -121021966 - AluSx SINE Alu -15 297 1 262 180 0 0 chr12 23261048 23261109 -121021380 + L1MC4a LINE L1 2213 2273 -4111 753 206 0 0 chr12 23261115 23261270 -121021219 + L1MC4a LINE L1 4942 5096 -1286 2164 100 28 0 chr12 23261822 23262111 -121020378 + AluSp SINE Alu 1 297 -16 273 237 175 18 chr12 23262797 23262911 -121019578 - L2 LINE L2 -15 3298 3167 434 224 246 17 chr12 23262987 23263166 -121019323 + MIR SINE MIR 31 250 -12 1375 185 65 65 chr12 23263580 23263670 -121018819 + L1MC4a LINE L1 5117 5206 -1176 2116 112 0 14 chr12 23263670 23263964 -121018525 + AluSx SINE Alu 1 290 -22 1375 185 65 65 chr12 23263964 23264316 -121018173 + L1MC4a LINE L1 5205 5559 -823 * 1957 182 11 0 chr12 23264312 23264686 -121017803 + L1MB4 LINE L1 5768 6145 -35 23 0 0 0 chr12 23264708 23264731 -121017758 + AT_rich Low_complexity Low_complexity 1 23 0 1135 239 183 16 chr12 23265383 23265876 -121016613 + L1MC4a LINE L1 5529 6103 -1941 21 71 0 0 chr12 23266114 23266156 -121016333 + AT_rich Low_complexity Low_complexity 1 42 0 317 312 81 23 chr12 23266287 23266508 -121015981 + L1ME4a LINE L1 5801 6034 -87 564 179 14 71 chr12 23267035 23267175 -121015314 + FLAM_A SINE Alu 1 132 -1 379 265 173 12 chr12 23267388 23267550 -121014939 + MIR SINE MIR 65 252 -10 866 277 124 25 chr12 23268711 23269220 -121013269 + L2 LINE L2 1605 2163 -1151 886 259 141 15 chr12 23269325 23269478 -121013011 + MER20B DNA MER1_type 82 214 -569 2241 113 10 3 chr12 23269478 23269788 -121012701 + AluSq SINE Alu 1 312 -1 886 259 141 15 chr12 23269788 23270024 -121012465 + MER20B DNA MER1_type 214 520 -263 458 232 66 53 chr12 23270115 23270266 -121012223 + L2 LINE L2 3138 3290 -23 2210 104 0 0 chr12 23270343 23270632 -121011857 + AluSx SINE Alu 1 289 -23 298 236 101 14 chr12 23270659 23270807 -121011682 + MER20B DNA MER1_type 623 783 0 754 286 189 50 chr12 23270819 23271732 -121010757 + L2 LINE L2 2244 3312 -1 449 106 0 96 chr12 23272022 23272116 -121010373 + AluJ/FLAM SINE Alu 1 85 -227 299 270 158 68 chr12 23272191 23272413 -121010076 + L2 LINE L2 2828 3069 -203 574 258 172 23 chr12 23272459 23272680 -121009809 + MIR SINE MIR 7 260 -2 183 302 156 10 chr12 23272703 23272799 -121009690 + L2 LINE L2 3158 3267 -5 198 71 0 0 chr12 23273360 23273388 -121009101 + (TG)n Simple_repeat Simple_repeat 2 29 0 243 61 0 0 chr12 23273475 23273508 -121008981 + (TG)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr12 23274032 23274057 -121008432 + GC_rich Low_complexity Low_complexity 1 25 0 1964 83 4 0 chr12 23274711 23274963 -121007526 + AluSq SINE Alu 1 253 -60 1631 145 10 72 chr12 23275158 23275462 -121007027 + AluJo SINE Alu 6 290 -22 1565 176 14 4 chr12 23276187 23276485 -121006004 - AluJo SINE Alu 0 302 2 497 340 73 17 chr12 23276976 23277208 -121005281 - MIR SINE MIR 0 262 18 317 120 0 0 chr12 23277317 23277367 -121005122 + U5 snRNA snRNA 1 50 -66 1173 314 62 35 chr12 23277686 23277876 -121004613 + L2 LINE L2 1752 1935 -1379 747 191 0 0 chr12 23277876 23278002 -121004487 - FLAM_A SINE Alu -7 126 1 1173 314 62 35 chr12 23278002 23278404 -121004085 + L2 LINE L2 1935 2360 -954 186 143 0 0 chr12 23278452 23278487 -121004002 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1849 167 3 0 chr12 23278641 23278928 -121003561 - AluJb SINE Alu -14 298 11 2122 104 14 3 chr12 23279131 23279418 -121003071 - AluSq SINE Alu -23 290 1 2185 95 0 7 chr12 23279658 23279969 -121002520 - AluSx SINE Alu 0 309 1 1927 161 7 7 chr12 23280312 23280611 -121001878 + AluSx SINE Alu 1 299 -13 421 375 46 0 chr12 23281612 23281764 -121000725 + L2 LINE L2 2732 2890 -424 1237 287 121 51 chr12 23281898 23282718 -120999771 + L1MC4a LINE L1 5264 6025 -1783 1963 114 179 16 chr12 23282718 23283086 -120999403 + MSTA LTR MaLR 1 428 0 1237 287 121 51 chr12 23283086 23283513 -120998976 + L1MC4a LINE L1 6025 6421 -1387 1721 166 3 42 chr12 23283513 23283821 -120998668 - AluJb SINE Alu 0 312 17 180 0 0 0 chr12 23283824 23283844 -120998645 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1237 287 121 51 chr12 23283844 23284205 -120998284 + L1MC4a LINE L1 6422 6990 -818 4508 100 84 75 chr12 23284224 23285237 -120997252 - MER11A LTR ERVK 0 1266 245 326 67 0 0 chr12 23285240 23285285 -120997204 - MER11A LTR ERVK -1221 45 1 2356 85 0 3 chr12 23285299 23285594 -120996895 + AluY SINE Alu 1 294 -17 1718 232 40 51 chr12 23285605 23286313 -120996176 + L1MC5 LINE L1 6968 7667 -294 935 205 19 19 chr12 23286365 23286570 -120995919 + MLT1E2 LTR MaLR 311 515 -111 1929 163 51 9 chr12 23286690 23287040 -120995449 + MLT1A1 LTR MaLR 1 365 0 2298 101 13 10 chr12 23287258 23287566 -120994923 - AluSx SINE Alu -3 309 1 1329 108 21 16 chr12 23287719 23287913 -120994576 - AluSx SINE Alu -117 195 1 1294 107 23 0 chr12 23288092 23288269 -120994220 - AluSx SINE Alu -131 181 1 299 337 68 92 chr12 23288542 23288791 -120993698 - L2 LINE L2 0 3272 3030 2027 202 114 7 chr12 23288791 23289247 -120993242 - MLT1D LTR MaLR 0 505 1 2137 172 22 15 chr12 23289354 23289756 -120992733 + MSTB LTR MaLR 1 405 -21 260 262 99 43 chr12 23289972 23290113 -120992376 - L2 LINE L2 -526 2788 2640 687 206 17 17 chr12 23290116 23290296 -120992193 - MER96B DNA MER1_type? -1 416 237 216 379 9 0 chr12 23290296 23290412 -120992077 - L2 LINE L2 -673 2641 2525 319 283 57 0 chr12 23290491 23290597 -120991892 - L2 LINE L2 -923 2391 2280 194 384 68 17 chr12 23290815 23290992 -120991497 + L2 LINE L2 451 636 -2678 2181 90 20 23 chr12 23291144 23291444 -120991045 + AluSq SINE Alu 1 299 -14 322 293 203 8 chr12 23291639 23291762 -120990727 + MER91A DNA MER1_type 23 169 -27 1617 189 46 6 chr12 23291769 23292097 -120990392 + MER58B DNA MER1_type 1 341 0 396 360 69 22 chr12 23292110 23292516 -120989973 + L2 LINE L2 1134 1558 -1756 2292 221 25 50 chr12 23292518 23293084 -120989405 + MLT2B3 LTR ERVL 3 554 0 1907 199 53 11 chr12 23293085 23293706 -120988783 + ERVL-B3 LTR ERVL 2 733 -5031 188 271 93 28 chr12 23293716 23293823 -120988666 + L2 LINE L2 1555 1668 -1646 1636 173 0 0 chr12 23293840 23294094 -120988395 - AluJo SINE Alu -58 254 1 560 244 31 19 chr12 23294121 23294281 -120988208 + L2 LINE L2 1956 2117 -1197 968 145 18 130 chr12 23294281 23294612 -120987877 - Charlie1a DNA MER1_type 0 1455 1162 889 250 18 18 chr12 23294622 23294842 -120987647 + MER58A DNA MER1_type 4 223 -1 4508 192 38 58 chr12 23294844 23295435 -120987054 - Charlie1a DNA MER1_type -1595 1166 610 2567 55 0 3 chr12 23295435 23295745 -120986744 - AluY SINE Alu -2 309 1 4508 192 38 58 chr12 23295745 23296343 -120986146 - Charlie1a DNA MER1_type -2151 610 1 1566 242 154 34 chr12 23296343 23296954 -120985535 + L2 LINE L2 2110 2793 -521 465 246 50 57 chr12 23296954 23297199 -120985290 - MLT1H LTR MaLR 0 589 348 1521 238 136 65 chr12 23297309 23298107 -120984382 - LTR28 LTR ERV1 0 1020 107 342 197 145 7 chr12 23298132 23298265 -120984224 - LTR28 LTR ERV1 -476 160 1 1157 223 29 141 chr12 23298300 23298532 -120983957 + MER97a DNA MER1_type? 1 135 -759 2054 125 0 16 chr12 23298532 23298837 -120983652 - AluSx SINE Alu -2 310 11 1157 223 29 141 chr12 23298837 23299165 -120983324 + MER97a DNA MER1_type? 135 498 -396 547 141 0 0 chr12 23299174 23299252 -120983237 + AluJ/FLAM SINE Alu 1 78 -234 317 259 40 23 chr12 23299305 23299479 -120983010 + MER97c DNA MER1_type? 883 1059 -31 821 127 7 7 chr12 23299480 23299622 -120982867 + L1MB3 LINE L1 6042 6183 0 326 220 17 0 chr12 23299626 23299685 -120982804 + MER5B DNA MER1_type 61 120 -58 316 307 62 62 chr12 23299724 23299949 -120982540 + L1MEd LINE L1 967 1191 -4928 2023 152 0 0 chr12 23300236 23300526 -120981963 + AluJb SINE Alu 5 294 -18 31 44 0 0 chr12 23300576 23300621 -120981868 + AT_rich Low_complexity Low_complexity 1 45 0 2206 115 3 0 chr12 23301175 23301471 -120981018 - AluSp SINE Alu -16 297 1 2598 144 2 79 chr12 23301612 23302118 -120980371 - MLT1C LTR MaLR 0 467 1 1927 158 14 0 chr12 23302714 23303001 -120979488 + AluJb SINE Alu 1 322 0 186 65 32 0 chr12 23303001 23303032 -120979457 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2310 98 0 0 chr12 23303281 23303576 -120978913 - AluY SINE Alu -16 295 1 640 210 0 8 chr12 23303599 23303718 -120978771 + FRAM SINE Alu 1 113 -63 25 0 0 0 chr12 23303729 23303754 -120978735 + AT_rich Low_complexity Low_complexity 1 25 0 2073 141 7 0 chr12 23303896 23304200 -120978289 - AluSx SINE Alu -6 306 1 1136 156 32 18 chr12 23304868 23305086 -120977403 + AluJo SINE Alu 87 307 -5 2021 131 3 0 chr12 23305153 23305459 -120977030 + AluSx SINE Alu 1 307 0 1201 130 0 0 chr12 23305640 23305802 -120976687 - AluSg/x SINE Alu -17 295 134 1822 225 28 24 chr12 23306120 23306245 -120976244 + L1ME1 LINE L1 5331 5454 -712 1517 220 56 11 chr12 23306245 23306618 -120975871 - MLT1B LTR MaLR 0 390 1 1822 225 28 24 chr12 23306618 23306938 -120975551 + L1ME1 LINE L1 5454 5781 -385 180 0 0 0 chr12 23306938 23306958 -120975531 + (TA)n Simple_repeat Simple_repeat 2 21 0 1822 225 28 24 chr12 23306958 23307004 -120975485 + L1ME1 LINE L1 5781 5825 -341 * 2056 211 79 49 chr12 23307000 23307446 -120975043 - L1ME LINE L1 -392 5774 5343 1011 192 6 0 chr12 23307446 23307618 -120974871 - FAM SINE Alu -2 173 1 2056 211 79 49 chr12 23307618 23307967 -120974522 - L1ME LINE L1 -823 5343 4935 2708 133 21 16 chr12 23307967 23308395 -120974094 - MSTB1 LTR MaLR 0 432 3 2056 211 79 49 chr12 23308395 23308543 -120973946 - L1ME LINE L1 -1231 4935 4793 26 30 0 0 chr12 23308546 23308579 -120973910 + AT_rich Low_complexity Low_complexity 1 33 0 316 216 11 34 chr12 23308593 23308681 -120973808 + L1MC4 LINE L1 6616 6701 -1341 211 176 40 27 chr12 23308682 23308756 -120973733 + (TA)n Simple_repeat Simple_repeat 1 75 0 292 167 106 0 chr12 23308804 23308870 -120973619 - L1ME LINE L1 -1364 4782 4710 806 168 61 5 chr12 23308870 23309066 -120973423 + MER114 LTR ERV 19 225 -423 186 43 0 0 chr12 23309066 23309089 -120973400 + (TG)n Simple_repeat Simple_repeat 2 24 0 809 129 0 9 chr12 23309089 23309205 -120973284 - FLAM_C SINE Alu -26 117 3 318 215 90 35 chr12 23309205 23309349 -120973140 + MER114 LTR ERV 212 363 -285 453 205 34 8 chr12 23309410 23309527 -120972962 + MER114 LTR ERV 499 618 -30 1762 138 69 0 chr12 23309742 23310017 -120972472 - AluSx SINE Alu -18 294 1 887 114 0 0 chr12 23310040 23310163 -120972326 - AluSg/x SINE Alu -16 294 172 267 157 0 0 chr12 23310193 23310244 -120972245 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 759 181 0 0 chr12 23310284 23310400 -120972089 - FLAM_C SINE Alu -15 118 3 417 286 0 0 chr12 23310616 23310742 -120971747 - L1ME1 LINE L1 -5 6161 6036 995 198 25 25 chr12 23310746 23310984 -120971505 + L1ME2 LINE L1 5679 5916 -248 1171 163 6 0 chr12 23311150 23311322 -120971167 + AluSx SINE Alu 1 173 -139 1779 129 14 30 chr12 23311380 23311675 -120970814 + AluSx SINE Alu 1 290 -22 2160 154 46 29 chr12 23311690 23312105 -120970384 - Tigger2a DNA MER2_type -2 432 11 2018 126 14 7 chr12 23312475 23312768 -120969721 + AluSx SINE Alu 1 295 -17 465 19 0 0 chr12 23313140 23313194 -120969295 + (CA)n Simple_repeat Simple_repeat 2 55 0 2342 161 47 79 chr12 23313227 23313799 -120968690 + MER41C LTR ERV1 1 554 0 2268 107 0 0 chr12 23314408 23314706 -120967783 - AluSc SINE Alu -11 298 1 310 258 0 0 chr12 23314995 23315057 -120967432 + L2 LINE L2 3248 3309 -4 238 303 11 22 chr12 23315256 23315345 -120967144 - MLT1-int LTR MaLR -1279 92 5 433 209 76 0 chr12 23315463 23315568 -120966921 + Charlie4 DNA MER1_type 1841 1953 -8 2267 54 50 0 chr12 23315576 23315855 -120966634 - AluSp SINE Alu -20 293 1 1387 143 0 0 chr12 23316067 23316270 -120966219 + AluJo SINE Alu 87 289 -23 1419 160 0 0 chr12 23316271 23316483 -120966006 - AluJb SINE Alu -99 213 2 2198 105 3 16 chr12 23316831 23317145 -120965344 + AluSq SINE Alu 1 310 -3 521 208 92 25 chr12 23317330 23317450 -120965039 - FLAM_C SINE Alu -15 128 1 1093 192 0 0 chr12 23317535 23317717 -120964772 - AluJo SINE Alu -44 268 87 2011 159 0 0 chr12 23318126 23318434 -120964055 - AluSx SINE Alu -1 311 4 2031 106 53 0 chr12 23319192 23319474 -120963015 + AluSc SINE Alu 1 297 -12 821 160 8 0 chr12 23319763 23319894 -120962595 - FLAM_C SINE Alu -11 132 1 1941 146 13 7 chr12 23320412 23320721 -120961768 + AluJo SINE Alu 1 311 -1 328 247 46 93 chr12 23321367 23321561 -120960928 - L1MC5 LINE L1 -37 7924 7740 569 163 0 0 chr12 23322708 23322794 -120959695 - FRAM SINE Alu -52 124 39 1980 107 3 27 chr12 23322820 23323119 -120959370 - AluSx SINE Alu -20 292 1 504 293 60 0 chr12 23323119 23323334 -120959155 - L1ME4a LINE L1 -292 5829 5602 257 261 0 14 chr12 23323611 23323680 -120958809 + CT-rich Low_complexity Low_complexity 4 71 0 528 299 83 18 chr12 23323810 23324027 -120958462 - L3 LINE CR1 -225 1352 1122 2038 140 0 34 chr12 23324254 23324576 -120957913 + AluSq SINE Alu 1 311 -2 803 11 0 0 chr12 23324600 23324694 -120957795 - L1PA2 LINE L1 -3 6152 6059 24 53 0 0 chr12 23324739 23324777 -120957712 + AT_rich Low_complexity Low_complexity 1 38 0 2060 136 0 10 chr12 23325480 23325782 -120956707 + AluSx SINE Alu 1 299 -13 2188 106 0 20 chr12 23327208 23327511 -120954978 - AluSx SINE Alu -15 297 1 1688 160 80 12 chr12 23328450 23328775 -120953714 + MER7A DNA MER2_type 1 345 -1 264 300 106 62 chr12 23328784 23328944 -120953545 - L2 LINE L2 0 3313 3147 26 30 0 0 chr12 23329115 23329148 -120953341 + AT_rich Low_complexity Low_complexity 1 33 0 2321 92 3 16 chr12 23329564 23329879 -120952610 - AluSq SINE Alu 0 313 3 189 125 200 0 chr12 23330217 23330257 -120952232 - L2 LINE L2 -5 3308 3261 180 0 0 0 chr12 23330278 23330298 -120952191 + (CA)n Simple_repeat Simple_repeat 1 20 0 282 306 75 0 chr12 23330478 23330612 -120951877 - MIR SINE MIR 0 262 119 307 136 29 37 chr12 23330714 23330793 -120951696 + L1MB2 LINE L1 6077 6161 -10 387 0 0 0 chr12 23330801 23330844 -120951645 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 391 191 73 0 chr12 23330854 23330964 -120951525 + L1ME4a LINE L1 5798 5915 -206 326 263 17 8 chr12 23330978 23331096 -120951393 + (TA)n Simple_repeat Simple_repeat 1 119 0 1069 142 0 0 chr12 23331096 23331251 -120951238 - AluSg/x SINE Alu -18 294 140 478 208 10 10 chr12 23331418 23331514 -120950975 + L1 LINE L1 1499 1594 -5902 * 6153 192 23 19 chr12 23331502 23331663 -120950826 + L1 LINE L1 3412 3571 -3994 1616 188 98 19 chr12 23331663 23332030 -120950459 + MSTD LTR MaLR 1 396 0 6153 192 23 19 chr12 23332030 23333386 -120949103 + L1 LINE L1 3571 4942 -2623 4579 185 25 21 chr12 23333391 23334094 -120948395 + L1 LINE L1 5703 6415 -1160 1782 165 0 3 chr12 23334094 23334407 -120948082 - AluJb SINE Alu 0 312 1 4579 185 25 21 chr12 23334407 23334799 -120947690 + L1 LINE L1 6415 6804 -771 3948 131 18 31 chr12 23334811 23334886 -120947603 + L1MA7 LINE L1 5254 5328 -963 2295 125 0 0 chr12 23334886 23335198 -120947291 + AluSx SINE Alu 1 312 0 3948 131 18 31 chr12 23335198 23335831 -120946658 + L1MA7 LINE L1 5328 5953 -338 959 169 0 0 chr12 23335831 23335979 -120946510 + AluSg/x SINE Alu 133 280 -30 386 85 17 0 chr12 23335981 23336040 -120946449 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 198 103 0 0 chr12 23336045 23336074 -120946415 + (A)n Simple_repeat Simple_repeat 1 29 0 680 147 93 20 chr12 23336091 23336241 -120946248 + L1MA7 LINE L1 5936 6096 -195 1758 37 9 0 chr12 23336241 23336491 -120945998 + L1PA7 LINE L1 5923 6174 0 1039 104 6 16 chr12 23336495 23336678 -120945811 + L1MA7 LINE L1 6111 6291 0 27 0 0 0 chr12 23337249 23337276 -120945213 + AT_rich Low_complexity Low_complexity 1 27 0 1564 162 0 12 chr12 23337545 23337798 -120944691 - AluJb SINE Alu -62 250 1 2535 154 7 23 chr12 23337939 23338368 -120944121 + MSTB LTR MaLR 5 426 0 257 67 0 22 chr12 23339413 23339458 -120943031 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 351 253 58 95 chr12 23340024 23340214 -120942275 - MIR SINE MIR 0 262 80 266 246 16 0 chr12 23340653 23340714 -120941775 - L2 LINE L2 -6 3307 3246 425 192 36 4 chr12 23340796 23341025 -120941464 + (TA)n Simple_repeat Simple_repeat 1 236 0 1523 162 35 28 chr12 23341144 23341428 -120941061 - AluJb SINE Alu -26 286 1 5402 86 116 37 chr12 23342348 23343428 -120939061 - MER11A LTR ERVK 0 1266 1 4115 86 9 0 chr12 23343476 23344025 -120938464 + MER41A LTR ERV1 1 554 0 5476 153 131 4 chr12 23344112 23345077 -120937412 + MER41A-int LTR ERV1 3 1089 -4857 351 0 0 0 chr12 23345077 23345116 -120937373 + (TG)n Simple_repeat Simple_repeat 2 40 0 11258 151 60 35 chr12 23345116 23345418 -120937071 + MER41A-int LTR ERV1 1359 1652 -3363 2352 86 0 3 chr12 23345418 23345720 -120936769 - AluSc SINE Alu -8 301 1 11258 151 60 35 chr12 23345720 23346621 -120935868 + MER41A-int LTR ERV1 1652 2530 -2485 2155 140 0 0 chr12 23346621 23346928 -120935561 - AluSx SINE Alu -5 307 1 11258 151 60 35 chr12 23346928 23348195 -120934294 + MER41A-int LTR ERV1 2530 4384 -631 2803 95 5 3 chr12 23348299 23348687 -120933802 + MER41A LTR ERV1 166 554 0 308 336 45 37 chr12 23349305 23349439 -120933050 - L2 LINE L2 -15 3298 3164 680 91 30 0 chr12 23349439 23349538 -120932951 + MER51D LTR ERV1 482 583 -74 684 273 128 37 chr12 23349982 23350669 -120931820 - L1ME LINE L1 -397 5765 5009 2642 175 77 39 chr12 23350714 23351903 -120930586 - L1MC2 LINE L1 -185 6159 5016 1867 133 0 0 chr12 23351903 23352159 -120930330 - AluSx SINE Alu -14 298 43 2642 175 77 39 chr12 23352159 23352195 -120930294 - L1MC2 LINE L1 -1328 5016 4983 1921 150 17 0 chr12 23352195 23352488 -120930001 - AluJo SINE Alu -14 298 1 2642 175 77 39 chr12 23352488 23352663 -120929826 - L1MC2 LINE L1 -1361 4983 4550 500 340 58 19 chr12 23352672 23353190 -120929299 - L1ME LINE L1 -1112 5034 4497 2402 77 3 0 chr12 23353512 23353823 -120928666 + AluSx SINE Alu 1 312 0 235 236 0 0 chr12 23354401 23354456 -120928033 + (TCG)n Simple_repeat Simple_repeat 2 56 0 189 174 153 122 chr12 23357164 23357262 -120925227 - MIR SINE MIR -42 220 120 614 294 32 0 chr12 23357950 23358137 -120924352 + MIR SINE MIR 1 193 -69 191 346 168 0 chr12 23358164 23358265 -120924224 - L2 LINE L2 -40 3232 3115 24 53 0 0 chr12 23358760 23358798 -120923691 + AT_rich Low_complexity Low_complexity 1 38 0 215 330 102 8 chr12 23359452 23359570 -120922919 - L2 LINE L2 -224 3048 2920 2139 106 7 7 chr12 23359620 23359942 -120922547 - AluSx SINE Alu 0 312 1 442 250 22 101 chr12 23360057 23360209 -120922280 - MER112 DNA MER1_type -6 254 130 2472 61 0 0 chr12 23360209 23360504 -120921985 - AluSp SINE Alu -16 297 3 442 250 22 101 chr12 23360504 23360619 -120921870 - MER112 DNA MER1_type -130 130 8 203 331 101 14 chr12 23360632 23360771 -120921718 - L2 LINE L2 -687 2627 2477 312 222 151 32 chr12 23361365 23361491 -120920998 - L1ME4a LINE L1 -187 5934 5794 1581 165 30 20 chr12 23361531 23361828 -120920661 - AluJo SINE Alu -7 305 6 1257 241 79 18 chr12 23361838 23362282 -120920207 - L1ME3A LINE L1 -222 6017 5547 729 112 0 0 chr12 23362291 23362398 -120920091 - AluSq/x SINE Alu -206 107 1 1954 254 160 25 chr12 23362398 23363505 -120918984 - L1ME3A LINE L1 -1331 4884 3659 240 184 184 10 chr12 23363527 23363625 -120918864 - L1ME3A LINE L1 -2827 3388 3274 507 161 34 2 chr12 23363628 23363744 -120918745 - AluJb SINE Alu -16 296 185 189 0 0 0 chr12 23363744 23363765 -120918724 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 507 161 34 2 chr12 23363765 23363884 -120918605 - AluJb SINE Alu -127 185 1 254 240 40 10 chr12 23363910 23364010 -120918479 - L1ME3A LINE L1 -2982 3233 3131 264 198 21 42 chr12 23364609 23364705 -120917784 - L1ME3A LINE L1 -3197 3018 2925 35 41 0 0 chr12 23364716 23364765 -120917724 + AT_rich Low_complexity Low_complexity 1 49 0 463 297 34 29 chr12 23364766 23364941 -120917548 - L1M4 LINE L1 -3295 2851 2676 1314 169 69 15 chr12 23364954 23365214 -120917275 + AluJb SINE Alu 30 303 -9 837 240 74 4 chr12 23365382 23365611 -120916878 - L1M4 LINE L1 -3587 2559 2315 1606 164 19 0 chr12 23365637 23365905 -120916584 - MER2 DNA MER2_type -1 344 72 351 193 0 72 chr12 23365948 23366031 -120916458 - MER2 DNA MER2_type -261 84 8 1112 253 28 70 chr12 23366039 23366427 -120916062 - L1ME3A LINE L1 -5988 408 37 334 259 135 39 chr12 23366687 23367050 -120915439 + HAL1 LINE L1 2002 2399 -108 2210 118 0 0 chr12 23367285 23367581 -120914908 - AluSx SINE Alu -16 296 1 291 326 79 26 chr12 23367862 23368129 -120914360 - L1MC5 LINE L1 -173 7788 7508 641 176 53 15 chr12 23368245 23368376 -120914113 - AluSq/x SINE Alu -176 136 1 2147 93 17 0 chr12 23368424 23368713 -120913776 + AluSq SINE Alu 1 294 -19 363 246 52 45 chr12 23368929 23369063 -120913426 - L1MC5 LINE L1 -818 7143 7009 26 74 0 0 chr12 23369532 23369586 -120912903 + AT_rich Low_complexity Low_complexity 1 54 0 858 230 72 8 chr12 23369634 23369869 -120912620 - MIR SINE MIR -11 251 2 1634 190 43 30 chr12 23370123 23370606 -120911883 - MER90 LTR ERV1 -1 613 79 21 36 0 0 chr12 23370766 23370794 -120911695 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 23372204 23372226 -120910263 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr12 23373179 23373202 -120909287 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr12 23373467 23373489 -120909000 + AT_rich Low_complexity Low_complexity 1 22 0 343 177 186 40 chr12 23373620 23373744 -120908745 - Charlie1 DNA MER1_type 0 2761 2620 * 971 246 58 9 chr12 23373729 23373953 -120908536 - Charlie1 DNA MER1_type -2525 236 2 22 0 0 0 chr12 23374015 23374037 -120908452 + AT_rich Low_complexity Low_complexity 1 22 0 1662 148 21 0 chr12 23374611 23374901 -120907588 - L1MA4 LINE L1 -5 6295 6000 207 278 83 28 chr12 23375386 23375458 -120907031 - L2 LINE L2 -1007 2307 2232 6250 182 27 40 chr12 23377083 23379719 -120902770 - L1MC1 LINE L1 -1 6332 3740 37 39 0 0 chr12 23379725 23379776 -120902713 + AT_rich Low_complexity Low_complexity 1 51 0 4219 196 31 32 chr12 23379933 23379968 -120902521 - L1MB2 LINE L1 -4 6167 6133 2136 201 37 61 chr12 23379968 23380591 -120901898 - LTR9 LTR ERV1 0 612 5 4219 196 31 32 chr12 23380591 23380712 -120901777 - L1MB2 LINE L1 -38 6133 6013 1995 99 13 16 chr12 23380712 23381015 -120901474 - AluSx SINE Alu -10 302 1 4219 196 31 32 chr12 23381015 23382761 -120899728 - L1MB2 LINE L1 -158 6013 4269 1034 209 13 5 chr12 23382991 23383291 -120899198 + MLT1A1 LTR MaLR 1 365 0 2064 102 10 7 chr12 23384004 23384297 -120898192 - AluSq SINE Alu -19 294 1 2320 109 0 0 chr12 23384354 23384666 -120897823 - AluSq SINE Alu -1 312 1 183 386 48 35 chr12 23384783 23384928 -120897561 - MIR3 SINE MIR -12 196 50 206 231 0 0 chr12 23386026 23386065 -120896424 + (TG)n Simple_repeat Simple_repeat 1 39 0 602 296 109 87 chr12 23386403 23386852 -120895637 - MLT1K LTR MaLR -41 547 89 546 262 28 21 chr12 23387003 23387144 -120895345 + MER5B DNA MER1_type 2 143 -35 551 221 79 57 chr12 23387144 23387487 -120895002 - MER31A-int LTR ERV1 -4507 429 22 2334 143 70 15 chr12 23387524 23387984 -120894505 - MER31A LTR ERV1 0 485 1 621 226 81 68 chr12 23388519 23388740 -120893749 + MIR SINE MIR 3 226 -36 189 0 0 0 chr12 23389064 23389085 -120893404 + (A)n Simple_repeat Simple_repeat 1 21 0 30 45 0 0 chr12 23389671 23389715 -120892774 + AT_rich Low_complexity Low_complexity 1 44 0 198 261 0 0 chr12 23389731 23389777 -120892712 + MIR SINE MIR 104 149 -113 2109 109 0 62 chr12 23391097 23391417 -120891072 - AluSq SINE Alu -13 300 1 1710 168 10 29 chr12 23391417 23391727 -120890762 - AluJo SINE Alu -8 304 1 26 0 0 0 chr12 23393183 23393209 -120889280 + AT_rich Low_complexity Low_complexity 1 26 0 237 427 0 19 chr12 23394129 23394232 -120888257 + MIR SINE MIR 20 120 -142 282 332 39 33 chr12 23394252 23394412 -120888077 + MER5B DNA MER1_type 15 184 -5 846 242 47 5 chr12 23394550 23394761 -120887728 - MER58A DNA MER1_type -1 223 4 183 80 0 0 chr12 23395804 23395829 -120886660 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr12 23395984 23396006 -120886483 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 23397546 23397567 -120884922 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 23397767 23397795 -120884694 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 23398136 23398159 -120884330 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr12 23398342 23398368 -120884121 + AT_rich Low_complexity Low_complexity 1 26 0 555 137 0 0 chr12 23398764 23398859 -120883630 + FLAM_C SINE Alu 48 142 -1 27 29 0 0 chr12 23398904 23398938 -120883551 + AT_rich Low_complexity Low_complexity 1 34 0 28 61 0 0 chr12 23398999 23399048 -120883441 + AT_rich Low_complexity Low_complexity 1 49 0 2603 36 0 10 chr12 23400586 23400893 -120881596 + AluY SINE Alu 1 304 -7 226 272 117 19 chr12 23400950 23401053 -120881436 - MIR SINE MIR -50 212 100 26 0 0 0 chr12 23401400 23401426 -120881063 + AT_rich Low_complexity Low_complexity 1 26 0 553 105 0 0 chr12 23402060 23402136 -120880353 + AluSg/x SINE Alu 215 290 -19 468 252 39 10 chr12 23402857 23402960 -120879529 + L2 LINE L2 3208 3313 0 1524 173 52 24 chr12 23404101 23404390 -120878099 - AluJb SINE Alu -15 297 1 1756 184 3 7 chr12 23404392 23404686 -120877803 - AluJo SINE Alu -19 293 1 7848 87 6 3 chr12 23405043 23406938 -120875551 - L1PA7 LINE L1 -4 6150 4255 384 306 33 22 chr12 23407261 23407444 -120875045 + L2 LINE L2 1802 1986 -1328 2004 205 35 73 chr12 23408052 23408628 -120873861 - MLT2B3 LTR ERVL 0 554 1 2001 142 30 0 chr12 23408725 23409021 -120873468 - AluSx SINE Alu -7 305 1 5258 193 65 21 chr12 23410527 23411916 -120870573 - Charlie1a DNA MER1_type -1 1454 1 287 211 118 0 chr12 23412090 23412166 -120870323 - MIR SINE MIR -101 161 77 669 130 89 16 chr12 23412283 23412406 -120870083 - FRAM SINE Alu -14 162 31 382 314 34 19 chr12 23412491 23412662 -120869827 - MIR SINE MIR -55 153 37 252 0 0 0 chr12 23415876 23415904 -120866585 + (T)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr12 23417932 23417960 -120864529 + AT_rich Low_complexity Low_complexity 1 28 0 1809 233 80 75 chr12 23420213 23420660 -120861829 - L1MC4 LINE L1 -502 7540 7086 210 37 0 0 chr12 23420660 23420687 -120861802 + (CCTA)n Simple_repeat Simple_repeat 1 27 0 1809 233 80 75 chr12 23420687 23421103 -120861386 - L1MC4 LINE L1 -956 7086 6673 239 35 0 0 chr12 23421149 23421178 -120861311 - U2 snRNA snRNA -152 36 8 3274 147 200 81 chr12 23421318 23422630 -120859859 - pTR5 LTR ERV1 0 1683 35 781 190 113 129 chr12 23422659 23423138 -120859351 - L1MC4a LINE L1 -496 7312 6842 437 162 0 0 chr12 23423140 23423214 -120859275 + LTR9 LTR ERV1 1 74 -538 1276 138 5 15 chr12 23423219 23423415 -120859074 + AluSx SINE Alu 11 204 -108 1207 172 92 164 chr12 23423827 23424173 -120858316 - L1MC4a LINE L1 -600 7208 6838 2868 164 59 24 chr12 23424173 23424252 -120858237 + LTR9 LTR ERV1 1 76 -536 2083 132 3 10 chr12 23424252 23424555 -120857934 + AluSx SINE Alu 11 311 -1 2868 164 59 24 chr12 23424555 23425066 -120857423 + LTR9 LTR ERV1 76 612 0 1207 172 92 164 chr12 23425066 23425335 -120857154 - L1MC4a LINE L1 -970 6838 6724 2123 125 0 0 chr12 23425335 23425632 -120856857 - AluSc SINE Alu -12 297 1 1207 172 92 164 chr12 23425632 23425704 -120856785 - L1MC4a LINE L1 -1084 6724 6648 428 261 126 0 chr12 23425735 23425934 -120856555 - L1MC4 LINE L1 -2 8040 7817 460 246 103 27 chr12 23425937 23426161 -120856328 - L1MDa LINE L1 -4712 1828 1588 535 294 75 7 chr12 23426204 23426615 -120855874 - L1M4 LINE L1 -3594 2552 2114 22 35 0 0 chr12 23426984 23427013 -120855476 + AT_rich Low_complexity Low_complexity 1 29 0 284 322 11 0 chr12 23428542 23428629 -120853860 + MIR3 SINE MIR 111 198 -10 3495 156 43 2 chr12 23428642 23429252 -120853237 - MER41B LTR ERV1 0 635 1 682 190 17 29 chr12 23429546 23429720 -120852769 + MLT1A2 LTR MaLR 5 176 -198 846 208 27 65 chr12 23429854 23430114 -120852375 + MLT1A2 LTR MaLR 117 366 -8 4217 42 12 32 chr12 23431024 23431593 -120850896 - LTR6B LTR ERV1 0 558 1 362 339 71 47 chr12 23431898 23432152 -120850337 - L1ME3 LINE L1 -258 5904 5645 561 186 0 0 chr12 23432212 23432309 -120850180 + Tigger3(Golem) DNA MER2_type 6 102 -2927 3789 136 61 3 chr12 23432312 23433012 -120849477 + Tigger3(Golem) DNA MER2_type 2287 3027 -2 435 264 92 22 chr12 23433014 23433241 -120849248 + ERVL LTR ERVL 155 397 -4599 * 1287 306 60 24 chr12 23433239 23433775 -120848714 + ERVL LTR ERVL 969 1523 -3473 1498 353 71 25 chr12 23434025 23435568 -120846921 + ERVL LTR ERVL 2656 4269 -1216 25 0 0 0 chr12 23436154 23436179 -120846310 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr12 23436466 23436488 -120846001 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 255 269 114 30 chr12 23437114 23437378 -120845111 - L1ME LINE L1 -299 5822 5537 2251 124 0 6 chr12 23437468 23437782 -120844707 - AluSx SINE Alu 0 312 1 518 343 77 33 chr12 23437895 23438620 -120843869 - L2 LINE L2 -40 3232 2472 926 70 0 0 chr12 23438939 23439053 -120843436 - AluSc SINE Alu -185 124 11 1260 112 0 0 chr12 23439053 23439223 -120843266 + AluSc SINE Alu 140 309 0 840 252 42 44 chr12 23439940 23440396 -120842093 - L1MC5 LINE L1 -106 7855 7401 410 319 190 0 chr12 23440790 23440953 -120841536 + MER91A DNA MER1_type 2 195 -1 251 320 75 65 chr12 23440993 23441613 -120840876 + L2 LINE L2 1856 2530 -784 407 266 115 14 chr12 23441626 23441765 -120840724 - L2 LINE L2 -40 3273 3121 196 335 74 56 chr12 23441825 23442109 -120840380 + L2 LINE L2 2625 2913 -401 604 285 65 14 chr12 23442431 23442645 -120839844 + MIR SINE MIR 23 247 -15 2185 122 23 0 chr12 23442872 23443175 -120839314 - AluSq SINE Alu -1 312 3 2756 0 0 3 chr12 23443219 23443519 -120838970 - AluYa5 SINE Alu -12 299 1 214 310 49 98 chr12 23445228 23445431 -120837058 + L2 LINE L2 2689 2881 -433 1375 183 84 113 chr12 23445457 23445912 -120836577 + MLT1E1 LTR MaLR 168 608 -46 765 175 0 0 chr12 23445912 23446032 -120836457 - FLAM_A SINE Alu -12 121 2 1375 183 84 113 chr12 23446032 23446078 -120836411 + MLT1E1 LTR MaLR 608 654 0 286 254 8 8 chr12 23446078 23446200 -120836289 + GA-rich Low_complexity Low_complexity 2 123 0 519 292 0 9 chr12 23446515 23446741 -120835748 - L1ME LINE L1 -817 5329 5106 322 298 120 14 chr12 23446826 23447101 -120835388 - L1ME LINE L1 -1198 4948 4645 372 291 30 19 chr12 23447272 23447540 -120834949 - L1ME LINE L1 -1499 4647 4377 1790 188 0 0 chr12 23447564 23447851 -120834638 - AluSx SINE Alu -25 287 1 612 131 0 0 chr12 23447910 23448009 -120834480 + L1PA13 LINE L1 6054 6152 -11 21 36 0 0 chr12 23448009 23448037 -120834452 + AT_rich Low_complexity Low_complexity 1 28 0 304 309 8 68 chr12 23448114 23448205 -120834284 - L1ME LINE L1 -1891 4255 4160 2319 103 3 0 chr12 23448205 23448506 -120833983 - AluSx SINE Alu -10 302 1 304 309 8 68 chr12 23448506 23448666 -120833823 - L1ME LINE L1 -1986 4160 4019 2355 67 0 0 chr12 23448940 23449260 -120833229 - AluY SINE Alu 0 320 1 189 94 0 0 chr12 23449423 23449455 -120833034 + (TG)n Simple_repeat Simple_repeat 2 33 0 203 204 0 23 chr12 23450311 23450355 -120832134 + T-rich Low_complexity Low_complexity 2 44 0 196 321 0 0 chr12 23452586 23452639 -120829850 + MER5A DNA MER1_type 62 114 -75 249 277 160 0 chr12 23453744 23453863 -120828626 + L3 LINE CR1 1186 1323 -254 244 353 209 23 chr12 23454090 23454571 -120827918 + L2 LINE L2 2656 3225 -47 291 307 0 0 chr12 23454590 23454678 -120827811 + L3 LINE CR1 1334 1421 -156 208 240 60 7 chr12 23454855 23455005 -120827484 + (TA)n Simple_repeat Simple_repeat 1 158 0 240 263 53 26 chr12 23455607 23455721 -120826768 - MLT1J LTR MaLR -44 467 351 703 201 35 30 chr12 23455735 23455904 -120826585 - MER5A DNA MER1_type -18 171 2 251 323 50 0 chr12 23455965 23456064 -120826425 - MLT1J1 LTR MaLR -284 162 59 722 216 77 0 chr12 23456094 23456302 -120826187 - L1ME1 LINE L1 -1600 4546 4323 679 209 96 23 chr12 23456313 23456490 -120825999 + L1ME1 LINE L1 4561 4750 -1396 1271 172 9 51 chr12 23456613 23456931 -120825558 + MLT1A2 LTR MaLR 4 374 0 2479 205 57 24 chr12 23456932 23458171 -120824318 + L1ME1 LINE L1 4771 6044 -122 1781 174 0 7 chr12 23458365 23458675 -120823814 - AluSx SINE Alu -2 310 3 299 341 79 47 chr12 23458790 23459339 -120823150 - L2 LINE L2 -40 3232 2658 276 322 11 0 chr12 23460029 23460116 -120822373 + MIR3 SINE MIR 111 198 -10 1854 199 67 12 chr12 23460129 23460545 -120821944 - MER41B LTR ERV1 0 635 197 2147 253 36 9 chr12 23460895 23461445 -120821044 + MLT1F1 LTR MaLR 3 567 0 203 260 40 13 chr12 23462445 23462595 -120819894 + (TA)n Simple_repeat Simple_repeat 1 154 0 318 296 0 0 chr12 23462772 23462860 -120819629 - L3 LINE CR1 -156 1421 1334 672 233 36 98 chr12 23463589 23463867 -120818622 - L1ME LINE L1 -389 5732 5474 429 235 49 37 chr12 23463943 23464105 -120818384 + MIR SINE MIR 99 262 0 976 221 16 67 chr12 23464873 23465027 -120817462 - LTR47B LTR ERVL 0 443 283 276 30 0 0 chr12 23465027 23465060 -120817429 + (TA)n Simple_repeat Simple_repeat 1 33 0 2189 98 7 0 chr12 23465060 23465366 -120817123 - AluY SINE Alu -3 308 1 976 221 16 67 chr12 23465366 23465463 -120817026 - LTR47B LTR ERVL -158 285 204 431 287 93 39 chr12 23465861 23466476 -120816013 + L1 LINE L1 4062 4719 -1427 1142 298 100 7 chr12 23466832 23467262 -120815227 - LTR33 LTR ERVL -1 520 51 834 258 36 32 chr12 23467694 23467884 -120814605 + MER58A DNA MER1_type 1 194 -2226 1912 162 11 40 chr12 23467884 23468260 -120814229 + MLT1A1 LTR MaLR 1 365 0 834 258 36 32 chr12 23468260 23468290 -120814199 + MER58A DNA MER1_type 194 222 -2 289 239 34 11 chr12 23468363 23468451 -120814038 + MER103 DNA DNA 1 90 -76 30 27 0 0 chr12 23468529 23468566 -120813923 + AT_rich Low_complexity Low_complexity 1 37 0 331 191 0 0 chr12 23469240 23469303 -120813186 - AluSp/q SINE Alu -8 295 233 2605 219 25 7 chr12 23472256 23472809 -120809680 + MER90 LTR ERV1 1 604 -10 709 193 0 0 chr12 23473603 23473722 -120808767 + FLAM_C SINE Alu 1 119 -14 663 228 49 84 chr12 23476793 23477140 -120805349 + LTR37B LTR ERV1 134 468 0 1754 194 0 0 chr12 23477146 23477445 -120805044 - AluJb SINE Alu -13 299 1 411 296 7 73 chr12 23478040 23478314 -120804175 + MER31-int LTR ERV1 1041 1296 -3640 2638 162 60 4 chr12 23479365 23480323 -120802166 + L1PA16 LINE L1 4762 5755 -401 309 120 0 0 chr12 23480427 23480477 -120802012 - L1MA1 LINE L1 -41 6261 6212 449 269 55 33 chr12 23480713 23480895 -120801594 + MIR SINE MIR 1 186 -76 583 180 0 0 chr12 23480898 23480998 -120801491 + AluJb SINE Alu 4 103 -209 1186 133 11 6 chr12 23480999 23481179 -120801310 - AluSq SINE Alu -132 181 1 21 36 0 0 chr12 23481966 23481994 -120800495 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr12 23484613 23484651 -120797838 + AT_rich Low_complexity Low_complexity 1 38 0 2658 15 2 2 chr12 23484711 23485128 -120797361 + L1P1 LINE L1 5078 5494 -661 2138 179 0 33 chr12 23485240 23485670 -120796819 + L1PA16 LINE L1 5750 6165 -1 459 222 20 20 chr12 23485943 23486096 -120796393 + L1MDa LINE L1 1396 1548 -4992 798 232 43 5 chr12 23486291 23486498 -120795991 + LTR37B LTR ERV1 1 215 -253 22 70 0 0 chr12 23486534 23486577 -120795912 + AT_rich Low_complexity Low_complexity 1 43 0 199 306 188 12 chr12 23487978 23488063 -120794426 + L2 LINE L2 3146 3245 -27 339 214 0 0 chr12 23488316 23488372 -120794117 - MER5A DNA MER1_type -130 59 4 189 0 0 0 chr12 23488585 23488606 -120793883 + (A)n Simple_repeat Simple_repeat 1 21 0 2166 126 0 0 chr12 23489681 23489990 -120792499 + AluSx SINE Alu 4 312 0 925 165 6 6 chr12 23490306 23490464 -120792025 + MER93b LTR ERV1 5 162 -211 1307 157 10 0 chr12 23490591 23490795 -120791694 + AluSx SINE Alu 12 217 -95 401 211 105 0 chr12 23490853 23490948 -120791541 + AluSg/x SINE Alu 185 289 -21 225 0 0 0 chr12 23491234 23491259 -120791230 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr12 23491407 23491437 -120791052 + AT_rich Low_complexity Low_complexity 1 30 0 945 232 51 57 chr12 23491692 23491977 -120790512 - MLT1A1 LTR MaLR 0 365 161 2361 99 0 0 chr12 23491977 23492281 -120790208 - AluSx SINE Alu -8 304 1 945 232 51 57 chr12 23492281 23492439 -120790050 - MLT1A1 LTR MaLR -204 161 4 493 332 130 0 chr12 23492784 23492992 -120789497 + MIR SINE MIR 26 260 -2 485 272 106 0 chr12 23493011 23493191 -120789298 - HAL1 LINE L1 -927 1580 1382 2362 155 9 60 chr12 23493250 23493636 -120788853 + MSTC LTR MaLR 1 362 -66 3356 104 0 4 chr12 23493636 23494116 -120788373 - L1PA14 LINE L1 -4 6157 5680 2362 155 9 60 chr12 23494116 23494180 -120788309 + MSTC LTR MaLR 362 428 0 543 317 79 52 chr12 23494180 23494600 -120787889 - L1MEd LINE L1 -4902 1217 787 2141 82 7 53 chr12 23494712 23495015 -120787474 + AluSp SINE Alu 1 289 -24 473 133 0 0 chr12 23495015 23495090 -120787399 + AluSp/q SINE Alu 227 301 -12 297 0 0 0 chr12 23495588 23495621 -120786868 + (CA)n Simple_repeat Simple_repeat 1 33 0 1627 59 0 15 chr12 23495629 23495832 -120786657 - AluSc SINE Alu -16 293 94 1701 140 80 3 chr12 23495837 23496123 -120786366 - AluSx SINE Alu -4 308 1 2377 239 36 6 chr12 23496806 23497354 -120785135 - MLT1F1 LTR MaLR 0 567 3 454 139 13 0 chr12 23497600 23497679 -120784810 + LTR37B LTR ERV1 9 88 -380 1474 183 8 0 chr12 23497681 23497922 -120784567 + Charlie3 DNA MER1_type 3 245 -2465 345 196 0 0 chr12 23497963 23498019 -120784470 + Charlie3 DNA MER1_type 2644 2699 -11 3745 36 0 0 chr12 23498120 23498570 -120783919 + L1HS LINE L1 5706 6155 0 22 0 0 0 chr12 23498574 23498596 -120783893 + AT_rich Low_complexity Low_complexity 1 22 0 406 225 132 31 chr12 23499085 23499214 -120783275 - L2 LINE L2 0 3313 3172 249 108 0 0 chr12 23499771 23499808 -120782681 + (TG)n Simple_repeat Simple_repeat 2 38 0 382 283 13 68 chr12 23500656 23500848 -120781641 + MIR SINE MIR 34 216 -46 232 309 138 6 chr12 23501245 23501426 -120781063 + MIR SINE MIR 58 262 0 216 316 68 26 chr12 23501822 23501939 -120780550 - L2 LINE L2 -216 3056 2935 471 373 86 21 chr12 23502029 23502367 -120780122 - L2 LINE L2 -520 2794 2435 365 263 0 0 chr12 23502385 23502480 -120780009 - MER20B DNA MER1_type -180 603 509 796 258 107 100 chr12 23502550 23503062 -120779427 - MER20B DNA MER1_type -265 518 3 743 259 39 15 chr12 23503461 23503666 -120778823 - MER63A DNA MER1_type 0 210 1 372 225 27 18 chr12 23504755 23504866 -120777623 - L1MA9 LINE L1 0 6312 6201 1263 157 0 0 chr12 23504876 23505073 -120777416 + MER2 DNA MER2_type 1 197 -148 652 223 31 53 chr12 23505184 23505402 -120777087 - L1ME LINE L1 -440 5681 5476 429 235 49 37 chr12 23505486 23505648 -120776841 + MIR SINE MIR 99 262 0 1254 343 126 33 chr12 23506366 23506416 -120776073 - L3 LINE CR1 -13 1564 1520 1254 255 70 42 chr12 23506416 23506570 -120775919 - LTR47B LTR ERVL 0 443 295 312 27 0 0 chr12 23506570 23506607 -120775882 + (TA)n Simple_repeat Simple_repeat 1 37 0 2462 63 7 0 chr12 23506607 23506907 -120775582 - AluY SINE Alu -9 302 1 1254 255 70 42 chr12 23506907 23507182 -120775307 - LTR47B LTR ERVL -147 296 1 1254 343 126 33 chr12 23507182 23508113 -120774376 - L3 LINE CR1 -57 1520 491 363 224 82 45 chr12 23508198 23508332 -120774157 - MER103 DNA DNA -16 150 12 579 290 30 6 chr12 23508406 23508575 -120773914 - L3 LINE CR1 -1097 480 308 249 140 0 0 chr12 23509132 23509189 -120773300 + (T)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chr12 23509738 23509762 -120772727 + AT_rich Low_complexity Low_complexity 1 24 0 255 125 0 0 chr12 23509843 23509883 -120772606 + (T)n Simple_repeat Simple_repeat 1 40 0 319 322 0 0 chr12 23510354 23510444 -120772045 - L1MC4 LINE L1 -1339 6703 6614 * 343 264 23 0 chr12 23510385 23510472 -120772017 + L1MC4 LINE L1 6615 6703 -1339 297 109 0 0 chr12 23510484 23510530 -120771959 + (GA)n Simple_repeat Simple_repeat 2 47 0 210 402 122 5 chr12 23511284 23511498 -120770991 - MIR SINE MIR -4 258 20 189 342 88 18 chr12 23511905 23512019 -120770470 + L2 LINE L2 3133 3254 -18 393 288 57 57 chr12 23513078 23513255 -120769234 - MER5B DNA MER1_type -1 177 1 3819 149 109 8 chr12 23513676 23514426 -120768063 - LTR1B LTR ERV1 0 826 1 2059 126 0 0 chr12 23515269 23515611 -120766878 - AluSx SINE Alu 0 347 6 285 321 23 87 chr12 23515679 23515978 -120766511 + LTR67 LTR ERVL 17 296 -261 481 288 46 13 chr12 23516199 23516352 -120766137 + LTR67 LTR ERVL 400 557 0 2054 118 6 13 chr12 23517381 23517694 -120764795 + AluSx SINE Alu 1 311 -1 22 56 0 0 chr12 23517743 23517779 -120764710 + AT_rich Low_complexity Low_complexity 1 36 0 235 336 25 25 chr12 23517868 23517990 -120764499 - MIR SINE MIR -1 261 140 292 260 45 104 chr12 23518457 23518611 -120763878 - MER5A DNA MER1_type -1 188 33 316 277 22 80 chr12 23518998 23519135 -120763354 + MIR SINE MIR 22 150 -112 773 207 129 39 chr12 23519171 23519427 -120763062 - L2 LINE L2 0 3313 3035 345 345 28 49 chr12 23519689 23519831 -120762658 - L2 LINE L2 0 3272 3134 21 0 0 0 chr12 23520120 23520141 -120762348 + AT_rich Low_complexity Low_complexity 1 21 0 245 276 113 63 chr12 23520410 23520649 -120761840 + MIR3 SINE MIR 2 257 -5 * 992 318 42 58 chr12 23520641 23521286 -120761203 + L2 LINE L2 2433 3060 -212 288 329 95 7 chr12 23521744 23521881 -120760608 + L2 LINE L2 3165 3313 0 1925 138 30 0 chr12 23523008 23523306 -120759183 + AluJb SINE Alu 1 307 -5 1893 210 69 21 chr12 23523605 23524086 -120758403 - L1ME1 LINE L1 0 6166 5663 1501 236 83 23 chr12 23524085 23524628 -120757861 - L1M3 LINE L1 -617 5566 4853 * 285 138 0 69 chr12 23524678 23524736 -120757753 + MLT1B LTR MaLR 1 54 -336 2441 246 103 29 chr12 23524749 23525898 -120756591 - L1ME1 LINE L1 -803 5343 4041 1921 165 23 33 chr12 23525898 23526291 -120756198 + MLT1B LTR MaLR 2 390 0 2441 246 103 29 chr12 23526291 23526504 -120755985 - L1ME1 LINE L1 -2105 4041 3845 21 71 0 0 chr12 23527625 23527667 -120754822 + AT_rich Low_complexity Low_complexity 1 42 0 618 81 0 0 chr12 23527667 23527754 -120754735 - L1MA1 LINE L1 -4 6298 6212 542 230 68 79 chr12 23527989 23528171 -120754318 + MIR SINE MIR 1 184 -78 2034 153 0 10 chr12 23528171 23528485 -120754004 + AluJb SINE Alu 2 312 0 1846 122 4 0 chr12 23528487 23528749 -120753740 + AluSp SINE Alu 43 305 -8 542 230 68 79 chr12 23528749 23528828 -120753661 + MIR SINE MIR 185 262 0 349 280 9 0 chr12 23528844 23528951 -120753538 + (TA)n Simple_repeat Simple_repeat 2 109 0 195 186 0 0 chr12 23528951 23528994 -120753495 + GA-rich Low_complexity Low_complexity 2 44 0 256 329 105 20 chr12 23529060 23529212 -120753277 + MIR SINE MIR 98 262 0 1932 142 4 0 chr12 23529300 23529581 -120752908 + AluJo SINE Alu 1 282 -30 212 0 36 0 chr12 23529584 23529612 -120752877 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 288 284 21 67 chr12 23529830 23530115 -120752374 + L1MC4a LINE L1 4881 5152 -994 188 33 0 33 chr12 23530118 23530148 -120752341 + (TA)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr12 23530331 23530359 -120752130 + AT_rich Low_complexity Low_complexity 1 28 0 451 246 17 29 chr12 23530359 23530534 -120751955 + L1MC4a LINE L1 5255 5427 -2381 1164 278 13 53 chr12 23530567 23531113 -120751376 + L1MC4a LINE L1 5548 6071 -1737 23 33 0 0 chr12 23532565 23532595 -120749894 + AT_rich Low_complexity Low_complexity 1 30 0 301 210 25 0 chr12 23533054 23533135 -120749354 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 1020 209 24 0 chr12 23533929 23534140 -120748349 - MER20 DNA MER1_type -3 216 1 843 227 25 128 chr12 23535482 23535880 -120746609 - LTR37B LTR ERV1 -1 467 132 1019 191 67 0 chr12 23535880 23536089 -120746400 + MER58A DNA MER1_type 1 223 -1 843 227 25 128 chr12 23536089 23536205 -120746284 - LTR37B LTR ERV1 -336 132 6 21 0 0 0 chr12 23536600 23536621 -120745868 + AT_rich Low_complexity Low_complexity 1 21 0 2299 167 121 13 chr12 23537880 23538336 -120744153 - MLT1D LTR MaLR 0 505 1 35 54 0 14 chr12 23538434 23538481 -120744008 + AT_rich Low_complexity Low_complexity 1 48 -25 1160 8 15 0 chr12 23538481 23538615 -120743874 - L1PA3 LINE L1 0 6155 6020 35 54 0 14 chr12 23538615 23538641 -120743848 + AT_rich Low_complexity Low_complexity 48 73 0 1144 272 95 55 chr12 23538710 23539459 -120743030 - LTR1B LTR ERV1 -15 811 33 231 284 57 0 chr12 23539468 23539556 -120742933 - L1MC/D LINE L1 -2000 5808 5716 1786 159 35 0 chr12 23540241 23540530 -120741959 - AluJb SINE Alu -13 299 1 786 243 42 34 chr12 23542113 23542376 -120740113 + MLT1C LTR MaLR 6 270 -197 1798 128 100 37 chr12 23542384 23542587 -120739902 + THE1C LTR MaLR 1 237 -138 2336 186 196 47 chr12 23542587 23543306 -120739183 - LTR1B LTR ERV1 0 826 1 1798 128 100 37 chr12 23543306 23543453 -120739036 + THE1C LTR MaLR 237 373 -2 627 261 7 13 chr12 23543462 23543615 -120738874 + MLT1C LTR MaLR 316 467 0 959 243 15 0 chr12 23544302 23544508 -120737981 - MIR SINE MIR -9 253 45 754 119 200 19 chr12 23544508 23544668 -120737821 - MER53 DNA DNA 0 189 1 21 0 0 0 chr12 23544719 23544740 -120737749 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr12 23545653 23545685 -120736804 + (CA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr12 23546774 23546795 -120735694 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 246 105 26 0 chr12 23546999 23547037 -120735452 + Alu SINE Alu 2 40 -268 1693 141 24 31 chr12 23547037 23547327 -120735162 + AluJo SINE Alu 11 298 -14 332 292 117 83 chr12 23547387 23547822 -120734667 + LTR67 LTR ERVL 108 557 0 199 416 8 0 chr12 23548196 23548321 -120734168 + MIR3 SINE MIR 76 201 -7 183 184 0 0 chr12 23548332 23548370 -120734119 + (TA)n Simple_repeat Simple_repeat 1 38 0 242 329 24 0 chr12 23549222 23549304 -120733185 + MIR3 SINE MIR 118 201 -7 350 347 27 14 chr12 23550375 23550522 -120731967 + MIR SINE MIR 106 254 -8 212 250 32 16 chr12 23551265 23551389 -120731100 + (TA)n Simple_repeat Simple_repeat 1 126 0 270 0 0 0 chr12 23551402 23551432 -120731057 + (TA)n Simple_repeat Simple_repeat 2 31 0 457 294 172 5 chr12 23552514 23552718 -120729771 + L2 LINE L2 1848 2085 -1229 507 99 0 0 chr12 23552758 23552829 -120729660 + AluS SINE Alu 1 71 -242 485 262 18 3 chr12 23552853 23553025 -120729464 + HERVL LTR ERVL 5109 5285 -203 743 290 157 52 chr12 23553055 23553476 -120729013 + MLT1H LTR MaLR 69 533 -16 382 345 47 7 chr12 23553916 23554064 -120728425 + LTR67 LTR ERVL 2 155 -402 8339 210 63 47 chr12 23554067 23555193 -120727296 + HERVL LTR ERVL 3384 4558 -1206 7472 29 6 0 chr12 23555193 23556620 -120725869 - L1PA4 LINE L1 -8 6147 4717 8339 210 63 47 chr12 23556620 23557586 -120724903 + HERVL LTR ERVL 4558 5507 -257 3396 249 132 50 chr12 23557588 23559434 -120723055 - L1MEc LINE L1 -3449 2766 1073 5097 133 23 20 chr12 23559434 23560787 -120721702 - L1PA16 LINE L1 -9 6157 4797 3396 249 132 50 chr12 23560787 23561314 -120721175 - L1MEc LINE L1 -5142 1073 218 2309 116 0 3 chr12 23561314 23561625 -120720864 + AluSg SINE Alu 1 310 0 3396 249 132 50 chr12 23561625 23561722 -120720767 - L1MEc LINE L1 -5997 218 130 1525 151 13 25 chr12 23561722 23562034 -120720455 + MER4E LTR ERV1 1 296 -470 1964 71 0 12 chr12 23562136 23562391 -120720098 - AluY SINE Alu -59 252 1 710 237 104 14 chr12 23562557 23562920 -120719569 + HsTC2 DNA Tc2 1288 1895 -3 1298 260 125 8 chr12 23562925 23563405 -120719084 + Charlie7 DNA MER1_type 150 685 -1927 938 180 20 0 chr12 23563574 23563724 -120718765 - FRAM SINE Alu -13 153 1 209 297 171 18 chr12 23563745 23563856 -120718633 + L2 LINE L2 3128 3255 -17 432 0 0 0 chr12 23564131 23564179 -120718310 + (TG)n Simple_repeat Simple_repeat 2 49 0 546 328 68 4 chr12 23564585 23564820 -120717669 + MIR SINE MIR 1 250 -12 503 183 11 103 chr12 23564929 23565104 -120717385 - MLT2C1 LTR ERVL -41 356 198 2347 103 0 3 chr12 23565107 23565418 -120717071 - AluSx SINE Alu -2 310 1 1815 170 23 23 chr12 23565955 23566297 -120716192 + MER2 DNA MER2_type 2 343 -1 498 33 0 0 chr12 23566299 23566359 -120716130 - AluSp/q SINE Alu -18 295 236 2376 62 0 7 chr12 23566885 23567174 -120715315 - AluY SINE Alu -24 287 1 464 160 0 50 chr12 23567274 23567374 -120715115 + AluJ/FRAM SINE Alu 218 312 0 329 238 0 0 chr12 23567875 23567938 -120714551 + Tigger3(Golem) DNA MER2_type 1 63 -2966 * 552 139 67 170 chr12 23567937 23568102 -120714387 + Tigger3(Golem) DNA MER2_type 2879 3026 -3 23 0 0 0 chr12 23568167 23568190 -120714299 + AT_rich Low_complexity Low_complexity 1 23 0 2625 98 3 8 chr12 23568250 23568616 -120713873 + THE1B LTR MaLR 1 364 0 10106 108 34 40 chr12 23568616 23570206 -120712283 + THE1B-int LTR MaLR 1 1580 0 2558 108 14 8 chr12 23570206 23570568 -120711921 + THE1B LTR MaLR 1 364 0 1550 211 82 3 chr12 23570637 23570993 -120711496 - MER61C LTR ERV1 -36 398 15 243 216 0 0 chr12 23570972 23571023 -120711466 - LTR28 LTR ERV1 -969 51 1 * 1705 190 3 25 chr12 23571080 23571396 -120711093 - AluJb SINE Alu -2 310 2 224 333 70 9 chr12 23571412 23571526 -120710963 - MIR SINE MIR -56 206 86 665 261 182 50 chr12 23572144 23572524 -120709965 - L2 LINE L2 -48 3265 2836 1810 174 22 28 chr12 23572562 23572713 -120709776 + MLT1A1 LTR MaLR 6 156 -209 2316 109 0 0 chr12 23572713 23573017 -120709472 + AluSg SINE Alu 1 304 -6 1810 174 22 28 chr12 23573017 23573227 -120709262 + MLT1A1 LTR MaLR 156 365 0 190 291 0 0 chr12 23573322 23573377 -120709112 + L2 LINE L2 3214 3268 -4 187 268 89 0 chr12 23573575 23573631 -120708858 - L2 LINE L2 -11 3261 3201 2327 65 0 56 chr12 23573891 23574212 -120708277 + AluY SINE Alu 1 303 -8 2137 260 62 39 chr12 23574576 23575065 -120707424 + L2 LINE L2 2111 2626 -688 2226 119 0 0 chr12 23575065 23575360 -120707129 - AluSx SINE Alu -17 295 1 2137 260 62 39 chr12 23575360 23575646 -120706843 + L2 LINE L2 2626 2904 -410 580 122 0 19 chr12 23575646 23575753 -120706736 + (TCC)n Simple_repeat Simple_repeat 3 107 0 862 147 0 51 chr12 23575755 23575912 -120706577 - AluJo/FRAM SINE Alu -2 310 162 418 205 0 0 chr12 23575912 23575995 -120706494 - AluJ/FLAM SINE Alu -229 83 1 689 293 26 89 chr12 23575995 23576421 -120706068 + L2 LINE L2 2843 3241 -72 2308 146 13 15 chr12 23576557 23576948 -120705541 - MLT1B LTR MaLR 0 390 1 1999 141 59 5 chr12 23577121 23577511 -120704978 + L1MB4 LINE L1 5735 6145 -35 31 26 0 0 chr12 23578006 23578044 -120704445 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr12 23578472 23578504 -120703985 + AT_rich Low_complexity Low_complexity 1 32 0 658 181 14 28 chr12 23579033 23579295 -120703194 + CT-rich Low_complexity Low_complexity 1 258 0 548 278 0 0 chr12 23579297 23579430 -120703059 - FLAM_A SINE Alu 0 133 1 727 254 19 93 chr12 23581030 23581396 -120701093 - MER102b DNA MER1_type -2 339 1 305 366 101 18 chr12 23581531 23581892 -120700597 + L2 LINE L2 2659 3055 -217 887 184 65 30 chr12 23582362 23582563 -120699926 - MER3 DNA MER1_type -1 208 1 724 254 56 5 chr12 23582673 23582886 -120699603 + MER58A DNA MER1_type 1 224 0 188 320 0 0 chr12 23583234 23583284 -120699205 + MIR3 SINE MIR 132 181 -27 1420 205 67 122 chr12 23583707 23584617 -120697872 - LTR28 LTR ERV1 0 1020 1 774 128 0 45 chr12 23585069 23585248 -120697241 + (TTCC)n Simple_repeat Simple_repeat 2 172 0 527 218 17 6 chr12 23585222 23585396 -120697093 + CT-rich Low_complexity Low_complexity 1 176 0 * 250 272 54 11 chr12 23587217 23587309 -120695180 + MIR3 SINE MIR 108 203 -5 1012 81 17 26 chr12 23587598 23587834 -120694655 + (TTTC)n Simple_repeat Simple_repeat 1 234 0 21 0 0 0 chr12 23588070 23588091 -120694398 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr12 23589497 23589541 -120692948 + AT_rich Low_complexity Low_complexity 1 44 0 1630 267 121 44 chr12 23592061 23593040 -120689449 - L2 LINE L2 0 3313 2235 1622 129 146 7 chr12 23593040 23593334 -120689155 + MER44D DNA MER2_type 1 605 -4 1630 267 121 44 chr12 23593334 23593538 -120688951 - L2 LINE L2 -1078 2235 2048 702 228 16 65 chr12 23593545 23593677 -120688812 + MER5A DNA MER1_type 1 123 -66 1845 129 46 0 chr12 23593677 23593957 -120688532 - AluJo SINE Alu -19 293 1 702 228 16 65 chr12 23593957 23594008 -120688481 + MER5A DNA MER1_type 123 175 -14 28 29 0 0 chr12 23594075 23594110 -120688379 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr12 23595503 23595526 -120686963 + AT_rich Low_complexity Low_complexity 1 23 0 486 159 0 0 chr12 23599500 23599588 -120682901 + (CA)n Simple_repeat Simple_repeat 1 88 0 497 250 73 52 chr12 23599836 23600028 -120682461 + L2 LINE L2 8 203 -3111 730 207 24 24 chr12 23600035 23600199 -120682290 - MER5A DNA MER1_type 0 189 26 5789 262 144 21 chr12 23600227 23602389 -120680100 + L2 LINE L2 233 2661 -653 1992 148 0 3 chr12 23602666 23602963 -120679526 - AluJb SINE Alu -16 296 1 572 54 84 12 chr12 23602971 23603138 -120679351 + (TA)n Simple_repeat Simple_repeat 2 180 0 399 127 48 18 chr12 23603119 23603284 -120679205 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 * 25 0 0 0 chr12 23603295 23603320 -120679169 + AT_rich Low_complexity Low_complexity 1 25 0 463 298 9 0 chr12 23603652 23603766 -120678723 + L2 LINE L2 2681 2795 -519 1600 255 68 17 chr12 23603766 23604236 -120678253 + MLT1F LTR MaLR 1 494 -48 2039 130 18 0 chr12 23604244 23604575 -120677914 + L1PA16 LINE L1 5808 6144 -22 271 211 0 0 chr12 23604598 23604650 -120677839 + MLT1F LTR MaLR 498 549 0 696 317 21 12 chr12 23604676 23604919 -120677570 + L2 LINE L2 2813 3057 -256 225 154 0 0 chr12 23605405 23605444 -120677045 + A-rich Low_complexity Low_complexity 1 39 0 315 276 233 6 chr12 23605907 23606070 -120676419 + MIR SINE MIR 1 200 -62 301 303 104 21 chr12 23606074 23606315 -120676174 - LTR16C LTR ERVL 0 491 231 2366 66 0 0 chr12 23607682 23607970 -120674519 - AluY SINE Alu -23 288 1 32 121 0 0 chr12 23608625 23608832 -120673657 + AT_rich Low_complexity Low_complexity 1 207 0 4910 117 207 5 chr12 23608847 23609736 -120672753 - L1PBa LINE L1 -5183 1680 612 1117 143 48 0 chr12 23609714 23609903 -120672586 - L1PBa LINE L1 -6663 200 3 * 2135 130 0 3 chr12 23610277 23610577 -120671912 - AluSx SINE Alu -13 299 1 594 241 73 30 chr12 23610582 23610814 -120671675 + MER112 DNA MER1_type 13 254 -6 5525 92 26 7 chr12 23610971 23611777 -120670712 + L1PA8 LINE L1 5352 6172 0 23 33 0 0 chr12 23611848 23611878 -120670611 + AT_rich Low_complexity Low_complexity 1 30 0 189 328 0 0 chr12 23612726 23612784 -120669705 + MIR SINE MIR 51 108 -100 216 271 12 24 chr12 23612839 23612924 -120669565 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 1949 237 112 24 chr12 23613929 23614019 -120668470 + MLT1E LTR MaLR 1 82 -511 4932 156 99 39 chr12 23614019 23614981 -120667508 - LTR28 LTR ERV1 0 1020 1 1949 237 112 24 chr12 23614981 23615435 -120667054 + MLT1E LTR MaLR 82 593 0 211 217 0 0 chr12 23615569 23615615 -120666874 + (CAATT)n Simple_repeat Simple_repeat 3 48 0 1444 174 127 62 chr12 23615815 23616200 -120666289 + MLT2D LTR ERVL 5 414 0 448 296 62 22 chr12 23616402 23616455 -120666034 + MIR SINE MIR 71 120 -142 2275 123 0 0 chr12 23616455 23616764 -120665725 - AluSx SINE Alu -3 309 1 448 296 62 22 chr12 23616764 23616889 -120665600 + MIR SINE MIR 120 256 -6 250 336 42 50 chr12 23618316 23618435 -120664054 - MIR SINE MIR -60 148 31 717 192 80 0 chr12 23618444 23618595 -120663894 - L1MB7 LINE L1 -1 6183 6021 6774 207 34 24 chr12 23618601 23620378 -120662111 - L1MB7 LINE L1 -801 5345 3550 1770 234 17 17 chr12 23620369 23620895 -120661594 - L1M4 LINE L1 -1036 5110 4479 * 400 223 4 42 chr12 23620915 23621015 -120661474 - AluJb SINE Alu -103 199 120 661 201 52 0 chr12 23621021 23621195 -120661294 - L1M4 LINE L1 -1675 4471 4289 1088 242 17 20 chr12 23621195 23621488 -120661001 + MLT1D LTR MaLR 214 505 0 686 301 71 66 chr12 23621488 23621841 -120660648 - L1M4 LINE L1 -1077 5069 4710 1387 164 134 72 chr12 23621841 23622214 -120660275 + MSTD LTR MaLR 1 396 0 686 301 71 66 chr12 23622214 23622451 -120660038 - L1M4 LINE L1 -1436 4710 4476 3011 224 11 11 chr12 23624061 23624798 -120657691 - L1 LINE L1 -1089 5057 4321 297 351 0 15 chr12 23625657 23625791 -120656698 + L3b LINE CR1 1240 1371 -212 1580 178 71 63 chr12 23625938 23626400 -120656089 + LTR37B LTR ERV1 3 468 0 243 0 0 0 chr12 23626437 23626464 -120656025 + (TG)n Simple_repeat Simple_repeat 1 27 0 306 52 35 17 chr12 23626850 23626908 -120655581 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 256 293 27 0 chr12 23627227 23627302 -120655187 + MIR3 SINE MIR 109 185 -23 290 268 0 0 chr12 23627398 23627469 -120655020 + GA-rich Low_complexity Low_complexity 4 74 0 206 147 29 0 chr12 23630055 23630089 -120652400 - MIR SINE MIR -8 254 220 22 0 0 0 chr12 23630203 23630225 -120652264 + AT_rich Low_complexity Low_complexity 1 22 0 209 242 30 15 chr12 23630282 23630348 -120652141 + GA-rich Low_complexity Low_complexity 2 68 0 241 333 16 79 chr12 23630580 23630706 -120651783 + MIR SINE MIR 20 137 -125 3765 117 16 25 chr12 23631023 23631594 -120650895 - MER61E LTR ERV1 -3 566 1 231 182 0 18 chr12 23631645 23631700 -120650789 - L1MD3 LINE L1 -10 7985 7932 1197 130 72 24 chr12 23631735 23631942 -120650547 + MER20 DNA MER1_type 1 217 -2 284 232 0 0 chr12 23631974 23632043 -120650446 + MER116 DNA Mariner 1 69 -11 519 233 80 40 chr12 23632044 23632293 -120650196 - L1MC4 LINE L1 -93 7949 7691 21 57 0 0 chr12 23633197 23633232 -120649257 + AT_rich Low_complexity Low_complexity 1 35 0 1941 214 5 10 chr12 23633316 23633731 -120648758 + L1M4 LINE L1 4870 5282 -864 6943 52 0 38 chr12 23633738 23635324 -120647165 + L1PA5 LINE L1 4599 6149 -5 2153 127 3 0 chr12 23635342 23635641 -120646848 + AluSq SINE Alu 6 305 -8 3176 270 57 86 chr12 23635677 23637906 -120644583 + L1M3b LINE L1 9 2023 -4328 2295 64 47 7 chr12 23637906 23638203 -120644286 + AluY SINE Alu 1 309 -2 3176 270 57 86 chr12 23638203 23638344 -120644145 + L1M3b LINE L1 2023 2167 -4184 931 182 0 16 chr12 23638345 23638537 -120643952 + L1M4 LINE L1 4911 5099 -1047 2167 157 51 37 chr12 23638542 23638970 -120643519 - Tigger2a DNA MER2_type 0 434 1 2885 163 6 11 chr12 23638970 23639481 -120643008 + L1MA6 LINE L1 5777 6300 0 13779 170 46 46 chr12 23639539 23639638 -120642851 + L1MA7 LINE L1 3237 3334 -4376 2234 113 0 10 chr12 23639638 23639949 -120642540 - AluSg SINE Alu -2 308 1 13779 170 46 46 chr12 23639949 23644323 -120638166 + L1MA7 LINE L1 3334 7708 -2 2465 180 28 10 chr12 23644333 23644828 -120637661 + L1M4 LINE L1 5293 5796 -388 207 139 0 0 chr12 23644885 23644921 -120637568 + (TG)n Simple_repeat Simple_repeat 2 37 0 380 294 25 8 chr12 23647170 23647289 -120635200 + MER5C DNA MER1_type 1 121 -203 255 170 0 0 chr12 23647316 23647369 -120635120 + MER5C DNA MER1_type 208 260 -64 2030 102 0 4 chr12 23647370 23647635 -120634854 + AluSx SINE Alu 3 266 -46 1667 158 20 41 chr12 23647909 23648250 -120634239 + THE1C LTR MaLR 1 334 -41 1128 135 0 0 chr12 23649875 23650067 -120632422 + L1MA4 LINE L1 6103 6294 -6 654 235 114 71 chr12 23650980 23651304 -120631185 - MER102b DNA MER1_type -3 338 1 263 333 61 9 chr12 23651807 23651921 -120630568 + MLT1K LTR MaLR 103 222 -366 320 241 45 45 chr12 23651927 23652060 -120630429 - MLT1K LTR MaLR -7 581 449 334 267 46 46 chr12 23652593 23652724 -120629765 + L2 LINE L2 2510 2640 -674 1393 207 61 51 chr12 23652738 23653149 -120629340 - MLT1C LTR MaLR -45 422 8 877 300 90 26 chr12 23653168 23653760 -120628729 + L2 LINE L2 2637 3282 -31 1080 210 22 121 chr12 23653760 23654165 -120628324 - MLT1A1 LTR MaLR 0 365 1 877 300 90 26 chr12 23654165 23654198 -120628291 + L2 LINE L2 3282 3311 -2 4637 125 55 76 chr12 23656076 23656994 -120625495 + MER4D LTR ERV1 1 898 -5 2819 224 85 16 chr12 23657239 23657930 -120624559 - MER21B LTR ERV1 -124 739 1 2260 159 52 24 chr12 23658321 23658743 -120623746 + Tigger2a DNA MER2_type 1 434 0 519 302 49 69 chr12 23658918 23659369 -120623120 - L1ME LINE L1 -465 5697 5258 685 303 25 33 chr12 23661382 23661626 -120620863 + MIR SINE MIR 2 243 -19 236 111 0 22 chr12 23661907 23661952 -120620537 + L1MA8 LINE L1 5785 5828 -340 910 126 14 21 chr12 23661952 23662095 -120620394 + AluSc SINE Alu 165 306 -3 510 182 10 0 chr12 23662095 23662194 -120620295 + L1MA8 LINE L1 5828 5927 -364 992 165 156 31 chr12 23662195 23662548 -120619941 - MSTC LTR MaLR 0 428 1 4046 234 82 90 chr12 23662548 23664094 -120618395 - MSTC-int LTR MaLR 0 1735 203 2147 115 0 20 chr12 23664372 23664676 -120617813 + AluSx SINE Alu 5 302 -10 1049 267 16 0 chr12 23665249 23665560 -120616929 + L1ME LINE L1 5457 5772 -390 1303 328 46 12 chr12 23665560 23666300 -120616189 + L1M3a LINE L1 529 1270 -5033 2272 117 81 5 chr12 23666300 23666693 -120615796 - MSTA LTR MaLR 0 428 6 1848 249 48 22 chr12 23666699 23667605 -120614884 + L1M3a LINE L1 905 1796 -4588 2369 85 0 0 chr12 23667817 23668147 -120614342 - L1PB1 LINE L1 -38 6113 5784 480 103 48 24 chr12 23668241 23668406 -120614083 + (TA)n Simple_repeat Simple_repeat 1 169 0 547 104 67 0 chr12 23668426 23668590 -120613899 + (TA)n Simple_repeat Simple_repeat 2 176 0 501 113 71 0 chr12 23668610 23668778 -120613711 + (TA)n Simple_repeat Simple_repeat 1 180 0 333 261 11 11 chr12 23668815 23668907 -120613582 + L1MC4 LINE L1 6612 6703 -1339 192 77 0 0 chr12 23668907 23668933 -120613556 + (TA)n Simple_repeat Simple_repeat 2 27 0 3383 134 16 3 chr12 23668933 23669651 -120612838 - L1P5 LINE L1 -359 5792 5068 2831 188 5 6 chr12 23669669 23670314 -120612175 + L1P5 LINE L1 4406 5049 -1097 242 317 297 0 chr12 23670807 23670908 -120611581 + L2 LINE L2 3138 3268 -4 269 302 88 50 chr12 23671691 23671850 -120610639 - L2 LINE L2 0 3313 3149 2114 158 42 49 chr12 23672437 23672485 -120610004 - MSTB LTR MaLR 0 426 379 1058 405 93 9 chr12 23672485 23672828 -120609661 + THE1C LTR MaLR 1 372 -3 2114 158 42 49 chr12 23672828 23673208 -120609281 - MSTB LTR MaLR -47 379 1 311 293 121 9 chr12 23673233 23673349 -120609140 - L2 LINE L2 -244 3069 2941 1942 270 75 65 chr12 23673923 23674532 -120607957 + L2 LINE L2 63 665 -2649 1970 161 0 3 chr12 23674532 23674842 -120607647 - AluJo SINE Alu 0 312 4 1942 270 75 65 chr12 23674842 23675106 -120607383 + L2 LINE L2 665 948 -2366 2113 113 0 0 chr12 23675106 23675381 -120607108 - AluSg SINE Alu -35 275 1 1942 270 75 65 chr12 23675381 23675457 -120607032 + L2 LINE L2 948 1022 -2292 378 186 12 35 chr12 23675914 23676000 -120606489 - L2 LINE L2 -203 3069 2986 303 49 0 0 chr12 23676776 23676817 -120605672 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 22 35 0 0 chr12 23677176 23677205 -120605284 + AT_rich Low_complexity Low_complexity 1 29 0 538 206 237 0 chr12 23678050 23678181 -120604308 - MIR SINE MIR -56 206 45 2480 147 60 11 chr12 23678329 23678798 -120603691 + ERVL-B1 LTR ERVL 5268 5759 -5 1491 129 0 0 chr12 23678801 23679025 -120603464 + MLT2B1 LTR ERVL 6 229 -291 441 0 0 0 chr12 23679030 23679079 -120603410 + (TG)n Simple_repeat Simple_repeat 1 49 0 195 42 0 0 chr12 23679078 23679102 -120603387 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 374 109 0 0 chr12 23679104 23679159 -120603330 + MLT2B1 LTR ERVL 410 464 0 337 272 11 0 chr12 23679181 23679273 -120603216 - Charlie8 DNA MER1_type -2244 173 81 1261 225 62 15 chr12 23679587 23679912 -120602577 - MER2 DNA MER2_type -4 340 1 234 293 13 0 chr12 23680023 23680098 -120602391 - MIR SINE MIR 0 262 187 21 0 0 0 chr12 23681662 23681683 -120600806 + AT_rich Low_complexity Low_complexity 1 21 0 188 354 0 15 chr12 23682158 23682223 -120600266 + L3 LINE CR1 1514 1577 0 805 244 44 36 chr12 23684099 23684349 -120598140 + MIR SINE MIR 11 262 0 542 284 115 0 chr12 23684495 23684703 -120597786 - MIR SINE MIR -2 260 29 319 259 83 19 chr12 23685413 23685521 -120596968 - L1M4 LINE L1 -2871 3275 3161 568 276 82 24 chr12 23685574 23686026 -120596463 - L1M4 LINE L1 -2985 3161 2684 2143 85 3 3 chr12 23686083 23686390 -120596099 + AluSg SINE Alu 1 307 0 2354 102 3 0 chr12 23686599 23686904 -120595585 - AluSx SINE Alu -6 306 1 297 239 15 0 chr12 23687771 23687838 -120594651 - MER83 LTR ERV1 0 448 381 247 107 89 0 chr12 23687854 23687910 -120594579 + MER83C LTR ERV1 270 330 -43 2498 107 18 0 chr12 23687935 23688318 -120594171 - MER83 LTR ERV1 -58 390 1 1078 173 0 0 chr12 23688640 23688819 -120593670 - AluSg/x SINE Alu -2 308 130 279 0 0 0 chr12 23688820 23688851 -120593638 + (TA)n Simple_repeat Simple_repeat 1 31 0 460 338 55 14 chr12 23689079 23689296 -120593193 - MIR SINE MIR -20 242 17 537 221 165 25 chr12 23689296 23689454 -120593035 - MER5A DNA MER1_type 0 189 10 2294 142 17 0 chr12 23689874 23690233 -120592256 + MLT1A1 LTR MaLR 1 365 0 189 74 0 0 chr12 23691090 23691117 -120591372 + (TTTAA)n Simple_repeat Simple_repeat 2 28 0 562 51 0 0 chr12 23691178 23691256 -120591233 + L1MA9 LINE L1 6235 6312 0 1169 274 86 25 chr12 23691435 23691983 -120590506 - L1MC4a LINE L1 -1894 5914 5334 22 35 0 0 chr12 23692105 23692134 -120590355 + AT_rich Low_complexity Low_complexity 1 29 0 415 326 89 0 chr12 23692486 23692676 -120589813 + MIR SINE MIR 34 240 -22 621 204 186 0 chr12 23692703 23692871 -120589618 + MIR SINE MIR 61 259 -3 180 258 129 0 chr12 23693538 23693600 -120588889 + MIR SINE MIR 75 144 -118 287 196 0 0 chr12 23693632 23693688 -120588801 - MLT2B3 LTR ERVL 0 554 499 325 111 0 0 chr12 23693688 23693742 -120588747 - L1ME LINE L1 -360 5810 5757 835 158 49 6 chr12 23693760 23693924 -120588565 - Tigger7 DNA MER2_type -19 2468 2298 415 183 12 0 chr12 23693920 23694002 -120588487 - Tigger7 DNA MER2_type -2169 318 236 * 442 298 60 37 chr12 23694195 23694413 -120588076 - MLT1K LTR MaLR -165 423 201 1873 173 0 13 chr12 23694560 23694867 -120587622 + AluJb SINE Alu 1 303 -9 2158 139 0 0 chr12 23694869 23695220 -120587269 + AluSx SINE Alu 10 360 0 2207 74 0 11 chr12 23695350 23695700 -120586789 + AluY SINE Alu 1 347 0 432 341 0 0 chr12 23697181 23697307 -120585182 + MIR SINE MIR 21 146 -62 521 187 32 144 chr12 23697532 23697816 -120584673 - MER112 DNA MER1_type -1 255 4 218 292 36 27 chr12 23698017 23698152 -120584337 + MIR SINE MIR 19 154 -68 * 314 333 20 10 chr12 23698145 23698247 -120584242 - L2 LINE L2 0 3272 3170 1375 281 60 88 chr12 23698471 23699325 -120583164 + L2 LINE L2 955 1784 -1530 411 273 76 52 chr12 23699454 23699547 -120582942 - L1MEc LINE L1 -3384 2831 2742 2248 138 13 16 chr12 23699547 23699923 -120582566 + THE1C LTR MaLR 1 375 0 411 273 76 52 chr12 23699923 23699993 -120582496 - L1MEc LINE L1 -3473 2742 2675 2127 109 7 26 chr12 23699993 23700297 -120582192 - AluSp SINE Alu -15 298 1 411 273 76 52 chr12 23700297 23700631 -120581858 - L1MEc LINE L1 -3540 2675 2321 293 208 66 28 chr12 23700667 23700773 -120581716 - L1ME3 LINE L1 -20 6142 6033 730 294 71 14 chr12 23700821 23701243 -120581246 - L1MEc LINE L1 -4516 1880 1435 240 35 0 0 chr12 23701540 23701569 -120580920 + (CA)n Simple_repeat Simple_repeat 2 30 0 249 264 0 0 chr12 23702484 23702537 -120579952 + CT-rich Low_complexity Low_complexity 2 54 0 212 360 112 12 chr12 23705240 23705401 -120577088 + L2 LINE L2 3092 3268 -4 6128 177 74 19 chr12 23706652 23707960 -120574529 + MER52A LTR ERV1 3 1498 -257 475 171 0 0 chr12 23707957 23708039 -120574450 + MER52A LTR ERV1 1674 1755 0 * 203 373 51 0 chr12 23708042 23708160 -120574329 + L2 LINE L2 2410 2533 -781 3444 177 54 30 chr12 23708214 23709015 -120573474 + L1MB4 LINE L1 5353 6172 -8 414 278 4 23 chr12 23709035 23709285 -120573204 + L1MC4a LINE L1 5443 5768 -2040 2359 234 12 30 chr12 23709291 23709565 -120572924 - MER119 DNA MER1_type -4 579 319 1816 5 0 0 chr12 23709565 23709760 -120572729 - AluYa5 SINE Alu -8 303 109 2359 234 12 30 chr12 23709760 23710045 -120572444 - MER119 DNA MER1_type -264 319 30 266 294 106 24 chr12 23710055 23710225 -120572264 + L1MC4a LINE L1 5778 5961 -1847 22 35 0 0 chr12 23710379 23710408 -120572081 + AT_rich Low_complexity Low_complexity 1 29 0 384 358 59 38 chr12 23710491 23710832 -120571657 + L1MC4a LINE L1 6284 6631 -1177 1514 338 43 41 chr12 23710905 23711970 -120570519 - HERV16 LTR ERVL -3736 1260 194 1328 256 111 23 chr12 23712116 23712503 -120569986 - LTR16C LTR ERVL 0 491 71 324 316 0 11 chr12 23712940 23713035 -120569454 - L2 LINE L2 0 3272 3179 23 0 0 0 chr12 23713737 23713760 -120568729 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr12 23713811 23713844 -120568645 + AT_rich Low_complexity Low_complexity 1 33 0 1383 81 0 0 chr12 23714899 23715084 -120567405 - AluYa5 SINE Alu 0 311 127 417 348 88 48 chr12 23715332 23715686 -120566803 + L2 LINE L2 2886 3253 -19 2322 179 58 52 chr12 23715839 23716343 -120566146 + MLT2B2 LTR ERVL 1 507 -8 253 229 49 0 chr12 23718618 23718679 -120563810 - L2 LINE L2 0 3272 3209 847 269 84 45 chr12 23719229 23719586 -120562903 - MLT1H LTR MaLR -178 371 1 2202 110 36 36 chr12 23719693 23720057 -120562432 + THE1B LTR MaLR 1 364 0 211 343 10 20 chr12 23721382 23721484 -120561005 - L2 LINE L2 -306 2966 2866 341 306 150 38 chr12 23721732 23722131 -120560358 - L2 LINE L2 -802 2512 2069 1987 151 0 3 chr12 23722536 23722835 -120559654 + AluJb SINE Alu 1 298 -14 1518 236 61 16 chr12 23723291 23723732 -120558757 - MLT1C LTR MaLR 0 467 7 225 0 0 0 chr12 23725259 23725284 -120557205 + (T)n Simple_repeat Simple_repeat 1 25 0 2268 102 0 7 chr12 23725318 23725621 -120556868 + AluSx SINE Alu 1 301 -11 21 36 0 0 chr12 23725930 23725958 -120556531 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr12 23725997 23726024 -120556465 + (T)n Simple_repeat Simple_repeat 1 27 0 239 333 23 0 chr12 23726406 23726493 -120555996 - MIR SINE MIR -114 148 60 225 239 159 74 chr12 23726618 23726781 -120555708 + L3b LINE CR1 1123 1299 -284 708 193 48 37 chr12 23727728 23727915 -120554574 + MER53 DNA DNA 1 189 0 180 310 16 8 chr12 23728162 23728291 -120554198 + T-rich Low_complexity Low_complexity 4 133 0 552 193 14 7 chr12 23728296 23728436 -120554053 + CT-rich Low_complexity Low_complexity 2 142 0 1033 80 29 11 chr12 23728438 23728613 -120553876 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 228 211 0 44 chr12 23728616 23728706 -120553783 + CT-rich Low_complexity Low_complexity 4 89 0 1315 196 84 43 chr12 23729368 23729714 -120552775 - MLT1A1 LTR MaLR -5 360 1 952 188 30 25 chr12 23730206 23730427 -120552062 - AluJo SINE Alu 0 305 84 2803 126 6 78 chr12 23730630 23731180 -120551309 + L1MA4A LINE L1 5794 6303 0 188 353 88 0 chr12 23731237 23731339 -120551150 - L2 LINE L2 -246 3026 2916 231 303 13 33 chr12 23731589 23731741 -120550748 + CT-rich Low_complexity Low_complexity 1 149 0 1558 160 3 35 chr12 23732355 23732637 -120549852 - AluSg1 SINE Alu -1 308 36 1717 146 62 46 chr12 23732717 23733086 -120549403 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr12 23735836 23735863 -120546626 + (A)n Simple_repeat Simple_repeat 1 27 0 207 327 188 0 chr12 23735866 23735967 -120546522 - MIR3 SINE MIR -25 183 64 604 296 128 32 chr12 23738071 23738476 -120544013 + L2 LINE L2 2851 3294 -19 23 54 0 0 chr12 23738686 23738723 -120543766 + AT_rich Low_complexity Low_complexity 1 37 0 190 346 125 0 chr12 23738863 23738967 -120543522 - L2 LINE L2 -35 3237 3121 442 259 80 19 chr12 23739010 23739172 -120543317 - MIR SINE MIR -42 220 49 611 239 99 123 chr12 23739519 23740075 -120542414 + MLT1H1 LTR MaLR 18 555 0 746 233 105 9 chr12 23740077 23740296 -120542193 + MIR SINE MIR 23 262 0 328 314 34 8 chr12 23740510 23740628 -120541861 + MIR SINE MIR 122 242 -20 222 37 0 0 chr12 23741073 23741100 -120541389 + (CA)n Simple_repeat Simple_repeat 1 27 0 213 303 0 30 chr12 23741814 23741880 -120540609 - MIR3 SINE MIR -6 202 139 317 328 136 11 chr12 23741915 23742092 -120540397 + MIR SINE MIR 63 261 -1 24 0 0 0 chr12 23742171 23742195 -120540294 + AT_rich Low_complexity Low_complexity 1 24 0 380 290 77 73 chr12 23742203 23742462 -120540027 - HAL1 LINE L1 -3 2504 2245 184 111 44 0 chr12 23742819 23742864 -120539625 + (TA)n Simple_repeat Simple_repeat 2 48 0 1688 126 19 48 chr12 23742987 23743256 -120539233 - MER1B DNA MER1_type 0 339 79 1547 266 104 34 chr12 23743587 23744100 -120538389 - HAL1 LINE L1 -795 1712 1116 192 77 0 0 chr12 23744100 23744126 -120538363 + (TG)n Simple_repeat Simple_repeat 2 27 0 1547 266 104 34 chr12 23744126 23744455 -120538034 - HAL1 LINE L1 -1391 1116 811 183 42 0 0 chr12 23744790 23744814 -120537675 + (T)n Simple_repeat Simple_repeat 1 24 0 22 80 0 0 chr12 23746447 23746497 -120535992 + AT_rich Low_complexity Low_complexity 1 50 0 827 129 50 14 chr12 23748028 23748206 -120534283 + AluJb SINE Alu 168 350 0 26 0 0 0 chr12 23748941 23748967 -120533522 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr12 23749434 23749458 -120533031 + (AATTG)n Simple_repeat Simple_repeat 5 28 0 590 294 107 52 chr12 23749594 23750016 -120532473 - MLT1H LTR MaLR 0 549 105 1103 261 81 30 chr12 23751337 23751671 -120530818 + MLT1H LTR MaLR 1 351 -198 274 214 18 0 chr12 23751684 23751740 -120530749 + LTR28 LTR ERV1 1 57 -963 * 1278 211 201 59 chr12 23751734 23752431 -120530058 + LTR1B LTR ERV1 19 983 -37 380 283 17 8 chr12 23752471 23752591 -120529898 + LTR28 LTR ERV1 900 1020 0 275 297 55 0 chr12 23752643 23752734 -120529755 + MLT1H LTR MaLR 454 549 0 190 337 23 0 chr12 23753917 23754003 -120528486 - MIR SINE MIR -67 141 54 224 119 0 24 chr12 23754417 23754459 -120528030 + (TA)n Simple_repeat Simple_repeat 2 42 0 680 242 38 16 chr12 23754579 23754765 -120527724 + MER91B DNA MER1_type 1 190 0 2022 103 0 0 chr12 23754880 23755142 -120527347 + AluSc SINE Alu 40 301 -8 324 102 0 0 chr12 23755430 23755479 -120527010 + (TG)n Simple_repeat Simple_repeat 1 49 0 598 174 78 30 chr12 23756874 23757041 -120525448 - MER5B DNA MER1_type -2 176 2 362 172 0 0 chr12 23757346 23757404 -120525085 + L2 LINE L2 3256 3313 0 190 186 0 34 chr12 23757662 23757721 -120524768 + CT-rich Low_complexity Low_complexity 4 60 0 216 420 23 0 chr12 23758424 23758512 -120523977 + L2 LINE L2 3129 3218 -54 180 0 0 0 chr12 23762434 23762454 -120520035 + (T)n Simple_repeat Simple_repeat 1 20 0 225 293 64 42 chr12 23765219 23765424 -120517065 + MIR SINE MIR 46 225 -37 270 215 62 0 chr12 23765934 23765999 -120516490 - LTR58 LTR ERV1 -252 427 359 22 0 0 0 chr12 23766262 23766284 -120516205 + AT_rich Low_complexity Low_complexity 1 22 0 1850 118 4 0 chr12 23766284 23766530 -120515959 - AluSx SINE Alu -64 248 2 204 216 0 0 chr12 23766743 23766794 -120515695 + (CTA)n Simple_repeat Simple_repeat 1 51 0 484 244 360 0 chr12 23766825 23766997 -120515492 - MIR SINE MIR -10 252 19 2320 89 0 3 chr12 23767496 23767789 -120514700 - AluSq SINE Alu -17 296 5 640 155 8 39 chr12 23767963 23768092 -120514397 - L1MB7 LINE L1 -8 6176 6052 2644 180 107 58 chr12 23768111 23768871 -120513618 + LTR1B LTR ERV1 30 826 0 2628 195 4 17 chr12 23768871 23769388 -120513101 - L1MB7 LINE L1 -135 6049 5540 375 294 42 8 chr12 23769598 23769717 -120512772 + L2 LINE L2 3149 3271 -1 2184 168 37 0 chr12 23772575 23772927 -120509562 - MLT1A1 LTR MaLR 0 365 1 575 322 89 0 chr12 23773138 23773352 -120509137 + MIR SINE MIR 22 254 -8 1473 188 31 10 chr12 23774026 23774318 -120508171 + AluJo SINE Alu 1 298 -14 2694 195 20 61 chr12 23774895 23775550 -120506939 + L1ME1 LINE L1 5534 6161 -5 421 296 79 33 chr12 23775731 23775971 -120506518 - MIR SINE MIR 0 262 12 334 321 128 37 chr12 23777095 23777282 -120505207 - L2 LINE L2 -1 3271 3068 210 257 129 0 chr12 23777701 23777771 -120504718 - L2 LINE L2 -5 3308 3230 2049 59 0 0 chr12 23779219 23779458 -120503031 + L1PA5 LINE L1 5905 6143 -11 191 30 0 61 chr12 23779462 23779495 -120502994 + (TAAAAA)n Simple_repeat Simple_repeat 6 36 0 2350 100 0 0 chr12 23779506 23779807 -120502682 + AluSx SINE Alu 1 301 -11 182 200 44 22 chr12 23780063 23780108 -120502381 + L2 LINE L2 3239 3284 -29 185 250 206 0 chr12 23781100 23781192 -120501297 + L2 LINE L2 1324 1434 -1880 420 180 281 37 chr12 23781326 23781470 -120501019 - MLT1D LTR MaLR 0 626 327 7027 83 20 4 chr12 23781470 23782767 -120499722 - L1PA13 LINE L1 -1 6162 4857 1679 150 0 37 chr12 23782768 23783068 -120499421 + L1PA13 LINE L1 4572 4860 -1286 1484 194 46 55 chr12 23783068 23783159 -120499330 - MLT1D LTR MaLR -163 342 252 447 35 0 0 chr12 23783159 23783216 -120499273 + (TC)n Simple_repeat Simple_repeat 2 58 0 1484 194 46 55 chr12 23783216 23783431 -120499058 - MLT1D LTR MaLR -253 252 37 1941 202 11 30 chr12 23783431 23783797 -120498692 - MLT1A1 LTR MaLR -2 363 5 1484 194 46 55 chr12 23783797 23783834 -120498655 - MLT1D LTR MaLR -468 37 1 2002 223 56 16 chr12 23784246 23784690 -120497799 - LTR40b LTR ERVL 0 462 1 242 217 0 0 chr12 23784811 23784871 -120497618 + T-rich Low_complexity Low_complexity 1 60 0 1405 216 51 25 chr12 23885269 23885625 -120396864 + MLT1A1 LTR MaLR 1 365 0 43 56 0 0 chr12 23886850 23886921 -120395568 + AT_rich Low_complexity Low_complexity 1 71 0 1109 280 38 8 chr12 23887162 23887665 -120394824 + L1MEc LINE L1 1303 1820 -4576 225 0 0 0 chr12 23887935 23887960 -120394529 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 733 206 0 0 chr12 23887997 23888123 -120394366 + FLAM_C SINE Alu 1 126 -17 300 53 0 0 chr12 23888140 23888178 -120394311 + (TA)n Simple_repeat Simple_repeat 1 38 0 717 112 0 0 chr12 23888295 23888393 -120394096 + AluSc SINE Alu 128 225 -84 1188 150 5 39 chr12 23888451 23888658 -120393831 + MLT1B LTR MaLR 191 390 0 1446 261 126 41 chr12 23888658 23889524 -120392965 + L2 LINE L2 2390 3313 0 503 263 19 19 chr12 23889802 23889958 -120392531 + L1MA9 LINE L1 6119 6274 -38 337 287 48 41 chr12 23890008 23890354 -120392135 - L1M4 LINE L1 -913 5233 4885 12074 209 39 28 chr12 23890488 23894288 -120388201 - L1MA9 LINE L1 -371 6177 2331 2355 296 80 41 chr12 23894289 23896227 -120386262 + L1MC4 LINE L1 5439 7541 -347 525 264 49 25 chr12 23896569 23896732 -120385757 + MIR SINE MIR 96 262 0 21 36 0 0 chr12 23896865 23896893 -120385596 + AT_rich Low_complexity Low_complexity 1 28 0 1562 204 0 35 chr12 23896893 23897182 -120385307 - AluJo SINE Alu -27 285 7 287 322 63 38 chr12 23897211 23897450 -120385039 - MIR SINE MIR 0 262 18 27 29 0 0 chr12 23897554 23897588 -120384901 + AT_rich Low_complexity Low_complexity 1 34 0 181 297 66 33 chr12 23897758 23897849 -120384640 + MIR SINE MIR 33 126 -136 24 91 0 0 chr12 23900707 23900773 -120381716 + AT_rich Low_complexity Low_complexity 1 66 0 5623 76 1 0 chr12 23902978 23903715 -120378774 - L1PA6 LINE L1 -4 6150 5413 859 97 0 0 chr12 23903816 23903930 -120378559 - AluSg/x SINE Alu -5 307 194 635 120 11 0 chr12 23903930 23904022 -120378467 - AluSg SINE Alu -217 93 1 3290 86 4 25 chr12 23904022 23904500 -120377989 - L1PB2 LINE L1 -176 5975 5508 273 276 66 72 chr12 23904655 23904836 -120377653 - MIR3 SINE MIR -14 194 15 2445 181 71 50 chr12 23905264 23905428 -120377061 - MER92B LTR ERV1 0 636 477 2196 124 0 0 chr12 23905428 23905726 -120376763 - AluSx SINE Alu -14 298 1 2445 181 71 50 chr12 23905726 23906184 -120376305 - MER92B LTR ERV1 -159 477 1 272 143 0 0 chr12 23908251 23908293 -120374196 - MER4D LTR ERV1 -586 286 245 5486 122 19 5 chr12 23908298 23909129 -120373360 + MER4D LTR ERV1 30 872 0 3317 72 0 18 chr12 23909387 23909843 -120372646 - LTR7 LTR ERV1 -2 448 1 1404 61 9 42 chr12 23909843 23910057 -120372432 - HERVH LTR ERV1 0 7713 7507 554 125 12 0 chr12 23910162 23910242 -120372247 - Tigger2 DNA MER2_type -2637 81 1 438 273 61 18 chr12 23911399 23911564 -120370925 + LTR33A LTR ERVL 352 523 0 181 324 95 0 chr12 23911565 23911639 -120370850 + MIR SINE MIR 106 186 -76 745 274 25 5 chr12 23911660 23911857 -120370632 + MER58A DNA MER1_type 24 224 0 3170 157 41 5 chr12 23912518 23913098 -120369391 - LTR26 LTR ERV1 0 603 3 203 361 68 0 chr12 23913209 23913342 -120369147 + MIR SINE MIR 92 233 -29 2177 121 7 0 chr12 23913641 23913938 -120368551 + AluSx SINE Alu 1 299 -13 39 38 0 0 chr12 23914089 23914142 -120368347 + AT_rich Low_complexity Low_complexity 1 53 0 207 0 0 0 chr12 23914188 23914211 -120368278 + (CA)n Simple_repeat Simple_repeat 1 23 0 1957 132 0 4 chr12 23914948 23915252 -120367237 + AluSx SINE Alu 6 308 0 8423 36 3 0 chr12 23915441 23916517 -120365972 - L1P LINE L1 -3280 2866 1788 2693 40 0 0 chr12 23916517 23916842 -120365647 + L1PA3 LINE L1 5831 6155 0 1987 60 134 0 chr12 23916852 23917120 -120365369 + AluY SINE Alu 2 305 -6 1952 136 3 35 chr12 23918494 23918810 -120363679 - AluSg SINE Alu -4 306 1 36 23 0 0 chr12 23919966 23920009 -120362480 + AT_rich Low_complexity Low_complexity 1 43 0 263 339 23 0 chr12 23922051 23922181 -120360308 - L2 LINE L2 -707 2607 2475 243 0 0 0 chr12 23922305 23922332 -120360157 + (TA)n Simple_repeat Simple_repeat 2 28 0 277 227 23 11 chr12 23922824 23922912 -120359577 + (TA)n Simple_repeat Simple_repeat 2 90 0 1231 278 131 18 chr12 23922933 23923187 -120359302 + L2 LINE L2 1528 1752 -1562 2395 101 0 0 chr12 23923187 23923495 -120358994 - AluY SINE Alu -3 308 1 1231 278 131 18 chr12 23923495 23923804 -120358685 + L2 LINE L2 1752 2155 -1159 973 141 12 0 chr12 23923905 23924068 -120358421 - MSTA LTR MaLR -263 165 1 739 333 14 18 chr12 23924082 23924415 -120358074 + L2 LINE L2 2703 3033 -280 1316 219 128 35 chr12 23924460 23924922 -120357567 + MLT1D LTR MaLR 1 505 0 331 271 118 24 chr12 23924933 23925103 -120357386 + L2 LINE L2 3094 3279 -34 231 204 19 19 chr12 23925119 23925173 -120357316 + GA-rich Low_complexity Low_complexity 4 57 0 198 354 70 25 chr12 23925223 23925381 -120357108 + L3 LINE CR1 1067 1231 -346 1996 102 39 21 chr12 23925449 23925782 -120356707 + L1MA7 LINE L1 5949 6287 -4 3693 145 7 0 chr12 23925827 23926426 -120356063 + L1PB4 LINE L1 5547 6149 -7 206 369 0 15 chr12 23926522 23926587 -120355902 + L3 LINE CR1 1464 1527 -50 695 313 86 33 chr12 23927270 23928174 -120354315 + L1ME3 LINE L1 3416 4367 -1779 623 246 74 51 chr12 23928247 23928746 -120353743 + MLT1G1 LTR MaLR 10 537 -5 323 270 92 33 chr12 23928843 23929180 -120353309 + L1ME3 LINE L1 4699 5055 -1091 328 315 24 16 chr12 23929215 23929342 -120353147 + L1ME3 LINE L1 5265 5378 -786 289 87 0 0 chr12 23929345 23929391 -120353098 + L1ME1 LINE L1 6120 6165 -1 663 270 93 9 chr12 23929395 23929824 -120352665 + L1ME3 LINE L1 5374 5838 -324 3377 104 2 0 chr12 23929907 23930399 -120352090 + L1PA13 LINE L1 5671 6163 0 37535 74 12 8 chr12 23930422 23932223 -120350266 + L1P LINE L1 11 1804 -4342 2889 3 0 0 chr12 23932223 23932533 -120349956 - AluYa5 SINE Alu -1 310 1 37535 74 12 8 chr12 23932533 23936073 -120346416 + L1P LINE L1 1804 5371 -775 925 275 72 45 chr12 23936175 23936553 -120345936 + L1M4 LINE L1 2320 2686 -3460 1867 139 11 7 chr12 23936553 23936859 -120345630 + AluSq SINE Alu 1 307 0 925 275 72 45 chr12 23936859 23936928 -120345561 + L1M4 LINE L1 2686 2752 -3394 1541 48 0 0 chr12 23936928 23937114 -120345375 + L1PA3 LINE L1 5970 6155 0 925 275 72 45 chr12 23937114 23937533 -120344956 + L1M4 LINE L1 2752 3212 -2934 755 82 0 0 chr12 23937533 23937631 -120344858 + L1PA4 LINE L1 1 98 -6048 * 37335 39 0 0 chr12 23937629 23943158 -120339331 + L1PA4 LINE L1 623 6152 -3 541 332 139 17 chr12 23943997 23944343 -120338146 + L3 LINE CR1 1146 1533 -44 521 122 33 0 chr12 23944648 23944738 -120337751 - MLT1B LTR MaLR -64 326 234 182 146 0 24 chr12 23944749 23944790 -120337699 + (TTTTC)n Simple_repeat Simple_repeat 1 40 0 2111 123 0 10 chr12 23945445 23945738 -120336751 - AluSx SINE Alu -22 290 1 996 136 34 0 chr12 23946267 23946443 -120336046 - L1M1 LINE L1 -7378 187 6 858 212 10 5 chr12 23946560 23946763 -120335726 - L1MB8 LINE L1 -5 6173 5970 367 173 0 25 chr12 23947151 23947232 -120335257 - HsTC2 DNA Tc2 -1819 79 1 3211 71 16 18 chr12 23947239 23947688 -120334801 + LTR7 LTR ERV1 1 448 -2 14376 95 11 24 chr12 23947690 23950475 -120332014 + HERVH LTR ERV1 1 2995 -4718 5244 116 17 0 chr12 23950454 23951294 -120331195 + HERVH LTR ERV1 3140 3993 -3720 * 2871 130 5 2 chr12 23951296 23951908 -120330581 + HERVH LTR ERV1 4488 5149 -2564 1232 133 0 60 chr12 23951909 23952143 -120330346 + HERVH LTR ERV1 5600 5819 -1894 630 86 0 0 chr12 23952143 23952236 -120330253 + HERVH LTR ERV1 7324 7416 -297 3743 127 14 13 chr12 23952341 23952971 -120329518 + Tigger2 DNA MER2_type 112 742 -1976 1520 159 4 0 chr12 23953038 23953295 -120329194 + Tigger2 DNA MER2_type 2461 2718 0 595 261 108 30 chr12 23953823 23954018 -120328471 + MIR SINE MIR 6 216 -46 508 270 151 13 chr12 23954018 23954177 -120328312 - MER5A DNA MER1_type 0 189 9 197 260 20 0 chr12 23954179 23954229 -120328260 + MIR SINE MIR 202 252 -10 370 348 14 14 chr12 23955137 23955275 -120327214 + MIR SINE MIR 19 156 -106 273 163 0 0 chr12 23957077 23957126 -120325363 - MLT1H LTR MaLR -461 88 40 208 135 19 19 chr12 23957539 23957591 -120324898 + (TA)n Simple_repeat Simple_repeat 1 52 0 471 18 0 0 chr12 23958166 23958222 -120324267 + (TG)n Simple_repeat Simple_repeat 2 57 0 629 337 68 49 chr12 23958268 23958443 -120324046 + ERVL LTR ERVL 1087 1257 -4507 777 298 9 0 chr12 23958443 23958661 -120323828 + MER58A DNA MER1_type 5 224 0 629 337 68 49 chr12 23958661 23959100 -120323389 + ERVL LTR ERVL 1257 1713 -4051 884 286 29 25 chr12 23959149 23959464 -120323025 + ERVL LTR ERVL 1823 2138 -3626 307 307 52 22 chr12 23959490 23959818 -120322671 + ERVL LTR ERVL 3274 3686 -2078 970 243 115 10 chr12 23960115 23960420 -120322069 - L2 LINE L2 -470 2844 2508 22 56 0 0 chr12 23960729 23960765 -120321724 + AT_rich Low_complexity Low_complexity 1 36 0 1638 184 40 58 chr12 23960791 23961188 -120321301 + MLT1B LTR MaLR 1 390 0 279 320 194 8 chr12 23961497 23961744 -120320745 + L2 LINE L2 3005 3297 -16 1041 291 50 47 chr12 23962192 23962677 -120319812 + LTR33 LTR ERVL 31 516 -5 182 361 98 33 chr12 23962751 23962873 -120319616 - L2 LINE L2 -5 3267 3138 1649 183 70 23 chr12 23963572 23963916 -120318573 + MLT1A1 LTR MaLR 6 365 0 2146 138 43 0 chr12 23964265 23964614 -120317875 - THE1B LTR MaLR 0 364 1 184 299 0 103 chr12 23965241 23965338 -120317151 + L2 LINE L2 3227 3313 0 26 0 0 0 chr12 23965396 23965422 -120317067 + AT_rich Low_complexity Low_complexity 1 26 0 13727 105 19 2 chr12 23965460 23968317 -120314172 + L1PA8 LINE L1 3281 6171 -1 184 250 0 50 chr12 23968722 23968802 -120313687 + L2 LINE L2 3015 3090 -182 248 279 117 46 chr12 23969850 23970047 -120312442 + MIR SINE MIR 48 258 -4 369 296 78 9 chr12 23970886 23971001 -120311488 - L2 LINE L2 0 3272 3150 180 0 0 0 chr12 23971629 23971649 -120310840 + (A)n Simple_repeat Simple_repeat 1 20 0 2478 215 46 9 chr12 23971649 23972732 -120309757 + L1M4 LINE L1 4633 5760 -424 429 240 0 0 chr12 23972738 23972838 -120309651 - L1MB5 LINE L1 -289 5885 5786 2241 327 78 41 chr12 23972843 23974190 -120308299 - L2 LINE L2 -1241 2073 677 453 317 58 36 chr12 23974218 23974442 -120308047 - L2 LINE L2 -2886 428 200 3558 31 0 0 chr12 23976054 23976478 -120306011 - L1PA4 LINE L1 -1545 4601 4178 7476 28 6 0 chr12 23976478 23978048 -120304441 + L1PA4 LINE L1 4581 6151 -4 468 245 16 54 chr12 23978295 23978479 -120304010 - MER104 DNA MER2_type -1 179 3 272 416 72 0 chr12 23978506 23978631 -120303858 + L2 LINE L2 3139 3272 0 1515 239 65 2 chr12 23978970 23979417 -120303072 - Charlie1b DNA MER1_type -48 475 1 202 217 87 0 chr12 23979606 23979652 -120302837 + MIR SINE MIR 157 206 -56 826 276 119 33 chr12 23979791 23980212 -120302277 + L2 LINE L2 1920 2376 -938 268 290 81 97 chr12 23980201 23980636 -120301853 + L2 LINE L2 2818 3245 -68 * 218 331 74 16 chr12 23980639 23980760 -120301729 + L3b LINE CR1 1378 1505 -78 2452 53 3 0 chr12 23981867 23982168 -120300321 + AluY SINE Alu 1 302 -9 571 353 55 46 chr12 23982975 23983451 -120299038 - LTR67 LTR ERVL -16 541 62 337 221 11 63 chr12 23983500 23983595 -120298894 - Tigger5 DNA MER2_type 0 2323 2234 2109 109 3 3 chr12 23983730 23984046 -120298443 + AluSx SINE Alu 3 318 0 2002 102 41 10 chr12 23985295 23985588 -120296901 - AluSg SINE Alu -6 304 3 194 233 12 128 chr12 23985847 23985933 -120296556 + MIR SINE MIR 82 157 -105 439 277 25 0 chr12 23986606 23986725 -120295764 + MIR SINE MIR 99 220 -42 322 318 45 9 chr12 23986836 23986876 -120295613 + MER81 DNA DNA 1 38 -76 348 24 0 0 chr12 23986876 23986917 -120295572 + (TTA)n Simple_repeat Simple_repeat 2 42 0 322 318 45 9 chr12 23986917 23986986 -120295503 + MER81 DNA DNA 38 114 0 294 441 14 0 chr12 23987354 23987499 -120294990 + L2 LINE L2 3121 3267 -5 190 318 47 73 chr12 23987573 23987661 -120294828 - L2 LINE L2 -967 2347 2258 279 0 0 0 chr12 23987661 23987692 -120294797 + (TG)n Simple_repeat Simple_repeat 2 32 0 190 318 47 73 chr12 23987692 23987795 -120294694 - L2 LINE L2 -1056 2258 2161 3288 143 19 17 chr12 23987819 23988393 -120294096 - L1MC3 LINE L1 0 7785 7211 303 276 81 8 chr12 23988949 23989072 -120293417 - MLT1I LTR MaLR -17 392 261 432 258 0 0 chr12 23989078 23989175 -120293314 + MER99 DNA DNA 6 102 -726 675 227 0 0 chr12 23989319 23989473 -120293016 + L1MB7 LINE L1 6019 6172 -12 375 177 28 50 chr12 23989567 23989748 -120292741 + (TA)n Simple_repeat Simple_repeat 1 177 0 288 231 33 0 chr12 23989797 23989888 -120292601 + (TA)n Simple_repeat Simple_repeat 1 94 0 1138 180 72 14 chr12 23990372 23990594 -120291895 + MER46A DNA MER2_type 2 236 0 338 332 108 43 chr12 23990789 23991159 -120291330 - L1MEc LINE L1 -4387 2009 1616 226 248 151 44 chr12 23991174 23991380 -120291109 - L1M2 LINE L1 -4393 2456 2229 238 128 0 21 chr12 23991508 23991555 -120290934 - L1MB7 LINE L1 -15 6169 6124 * 1624 162 14 3 chr12 23991546 23991830 -120290659 + L1MB3 LINE L1 5856 6142 -41 * 25544 137 11 16 chr12 23991829 23993066 -120289423 + L1PA8A LINE L1 2 1243 -5203 252 59 0 0 chr12 23993066 23993100 -120289389 + (CAA)n Simple_repeat Simple_repeat 3 36 0 25544 137 11 16 chr12 23993100 23998243 -120284246 + L1PA8A LINE L1 1243 6419 -27 2020 118 17 0 chr12 23998367 23998656 -120283833 - AluSx SINE Alu -18 294 1 294 221 26 13 chr12 23999278 23999355 -120283134 - MER103 DNA DNA -72 94 17 22 80 0 0 chr12 23999516 23999566 -120282923 + AT_rich Low_complexity Low_complexity 1 50 0 8753 171 13 27 chr12 23999667 24001893 -120280596 + L1PA15-16 LINE L1 1 2086 -4763 1914 145 26 19 chr12 24001893 24002203 -120280286 + AluSx SINE Alu 1 312 0 8753 171 13 27 chr12 24002203 24002405 -120280084 + L1PA15-16 LINE L1 2086 2289 -4560 4014 240 60 52 chr12 24002612 24004761 -120277728 + L1PA16 LINE L1 1046 3199 -3598 * 10299 162 38 8 chr12 24004758 24007872 -120274617 + L1MA2 LINE L1 3110 6304 0 11034 201 23 11 chr12 24007875 24011284 -120271205 + L1PA16 LINE L1 3180 6627 -190 613 118 9 9 chr12 24011286 24011396 -120271093 + L1PA16 LINE L1 6708 6817 0 369 348 50 0 chr12 24011505 24011666 -120270823 - MIR SINE MIR -26 236 68 531 220 21 71 chr12 24013081 24013222 -120269267 + MLT1B LTR MaLR 1 134 -240 201 162 0 0 chr12 24013382 24013419 -120269070 + A-rich Low_complexity Low_complexity 1 37 0 873 177 33 65 chr12 24013420 24013478 -120269011 + MLT1B LTR MaLR 167 225 -165 2242 131 120 5 chr12 24013478 24013861 -120268628 - MSTA LTR MaLR -1 427 1 873 177 33 65 chr12 24013861 24014017 -120268472 + MLT1B LTR MaLR 225 390 0 564 289 14 48 chr12 24014018 24014329 -120268160 - L1MC4a LINE L1 -302 5819 5609 546 235 127 58 chr12 24014354 24014614 -120267875 - MLT1J1 LTR MaLR -166 280 3 258 136 0 0 chr12 24014618 24014662 -120267827 + (TG)n Simple_repeat Simple_repeat 2 45 0 381 282 80 31 chr12 24014736 24015045 -120267444 - L1MC4a LINE L1 -748 5398 5159 1496 172 73 3 chr12 24015618 24015921 -120266568 - MER7A DNA MER2_type 0 346 25 1658 232 50 71 chr12 24017269 24017324 -120265165 - MLT1E LTR MaLR -11 582 527 1998 141 0 0 chr12 24017324 24017630 -120264859 + AluSx SINE Alu 1 306 0 1658 232 50 71 chr12 24017630 24017905 -120264584 - MLT1E LTR MaLR -66 527 266 3761 122 2 2 chr12 24017905 24018431 -120264058 + MER1A DNA MER1_type 2 527 0 1658 232 50 71 chr12 24018431 24018692 -120263797 - MLT1E LTR MaLR -327 266 1 2817 96 0 0 chr12 24018820 24019184 -120263305 + THE1B LTR MaLR 1 364 0 1669 174 6 39 chr12 24019348 24019659 -120262830 - AluJb SINE Alu -11 301 1 22 0 0 0 chr12 24019948 24019970 -120262519 + AT_rich Low_complexity Low_complexity 1 22 0 2573 62 0 0 chr12 24020289 24020593 -120261896 - AluY SINE Alu -7 304 1 821 279 40 4 chr12 24020628 24020875 -120261614 - MIR SINE MIR -1 261 6 2261 132 0 0 chr12 24020956 24021266 -120261223 - AluSx SINE Alu 0 312 3 2754 144 35 19 chr12 24021527 24022007 -120260482 + LTR45B LTR ERV1 2 489 0 23 54 0 0 chr12 24022895 24022932 -120259557 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr12 24023171 24023194 -120259295 + AT_rich Low_complexity Low_complexity 1 23 0 221 350 219 0 chr12 24023409 24023532 -120258957 - MIR3 SINE MIR -43 165 16 231 206 68 0 chr12 24023871 24023944 -120258545 + L1ME LINE L1 5675 5752 -369 21 0 0 0 chr12 24023974 24023995 -120258494 + AT_rich Low_complexity Low_complexity 1 21 0 2148 113 31 0 chr12 24024154 24024447 -120258042 - AluSg1 SINE Alu -7 302 1 21 57 0 0 chr12 24024831 24024866 -120257623 + AT_rich Low_complexity Low_complexity 1 35 0 2266 254 3 54 chr12 24026012 24026713 -120255776 + LTR8 LTR ERV1 27 691 0 1134 184 63 5 chr12 24026738 24026944 -120255545 - AluJb SINE Alu -21 291 74 246 325 50 12 chr12 24027109 24027189 -120255300 - L2 LINE L2 -39 3233 3151 1845 146 0 20 chr12 24027189 24027484 -120255005 + AluJb SINE Alu 1 289 -23 257 301 43 43 chr12 24027735 24027828 -120254661 - MIR SINE MIR -150 112 20 911 168 22 6 chr12 24027847 24028026 -120254463 - L1PB2 LINE L1 -4 6147 5966 693 174 0 0 chr12 24028043 24028158 -120254331 - AluSg/x SINE Alu 0 312 198 550 167 10 0 chr12 24028158 24028254 -120254235 - AluSg1 SINE Alu -212 97 1 474 194 8 32 chr12 24028263 24028387 -120254102 - L1PB2 LINE L1 -185 5966 5846 202 280 0 0 chr12 24079179 24079229 -120203260 + L2 LINE L2 3198 3247 -66 513 0 0 0 chr12 24079705 24079762 -120202727 + (GA)n Simple_repeat Simple_repeat 1 57 0 227 256 222 25 chr12 24081212 24081415 -120201074 + HAL1 LINE L1 2170 2412 -95 22 35 0 0 chr12 24082182 24082211 -120200278 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 24082399 24082420 -120200069 + AT_rich Low_complexity Low_complexity 1 21 0 184 255 59 0 chr12 24082495 24082546 -120199943 - L2 LINE L2 -4 3268 3215 212 333 160 0 chr12 24083306 24083381 -120199108 + L2 LINE L2 3201 3287 -26 404 268 128 0 chr12 24084129 24084293 -120198196 - Tigger3(Golem) DNA MER2_type 0 3037 2853 22 35 0 0 chr12 24084838 24084867 -120197622 + AT_rich Low_complexity Low_complexity 1 29 0 2119 113 0 0 chr12 24085629 24085937 -120196552 + AluSx SINE Alu 1 308 0 250 240 0 0 chr12 24086664 24086714 -120195775 + GA-rich Low_complexity Low_complexity 1 50 0 273 57 0 0 chr12 24088355 24088390 -120194099 + (TC)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr12 24088722 24088743 -120193746 + AT_rich Low_complexity Low_complexity 1 21 0 369 75 0 0 chr12 24088743 24088796 -120193693 + (CA)n Simple_repeat Simple_repeat 2 54 0 216 97 0 0 chr12 24089433 24089464 -120193025 + (CA)n Simple_repeat Simple_repeat 2 32 0 244 333 44 0 chr12 24089465 24089555 -120192934 + MIR SINE MIR 117 210 -52 515 298 79 17 chr12 24089834 24090012 -120192477 - L2 LINE L2 -243 3070 2882 819 287 121 17 chr12 24090021 24090376 -120192113 - L2 LINE L2 -610 2704 2313 293 54 0 0 chr12 24090378 24090415 -120192074 - THE1B LTR MaLR 0 364 328 554 269 134 6 chr12 24091179 24091350 -120191139 - MIR SINE MIR -62 200 8 26 0 0 0 chr12 24091397 24091423 -120191066 + AT_rich Low_complexity Low_complexity 1 26 0 423 302 81 0 chr12 24091922 24092071 -120190418 - L2 LINE L2 -4 3309 3149 975 277 50 70 chr12 24092085 24092554 -120189935 + L1MEd LINE L1 564 1014 -5191 2082 142 0 0 chr12 24092554 24092864 -120189625 + AluJo SINE Alu 1 310 -2 975 277 50 70 chr12 24092864 24093151 -120189338 + L1MEd LINE L1 1014 1305 -4900 505 244 113 50 chr12 24093805 24094165 -120188324 + L1MEd LINE L1 2117 2460 -3755 24 67 0 0 chr12 24094297 24094342 -120188147 + AT_rich Low_complexity Low_complexity 1 45 0 716 309 29 3 chr12 24094374 24094720 -120187769 + L1MEd LINE L1 2479 2833 -3382 243 294 49 92 chr12 24095686 24095870 -120186619 + L2 LINE L2 3089 3264 -8 26 0 0 0 chr12 24095953 24095979 -120186510 + AT_rich Low_complexity Low_complexity 1 26 0 739 346 114 18 chr12 24096116 24096618 -120185871 + L2 LINE L2 2762 3313 0 2410 65 13 3 chr12 24096783 24097089 -120185400 + AluY SINE Alu 1 309 -2 676 194 8 0 chr12 24097239 24097373 -120185116 + L1PB4 LINE L1 6022 6156 0 2515 61 0 3 chr12 24099830 24100141 -120182348 - AluY SINE Alu -1 310 1 291 54 0 0 chr12 24101965 24102002 -120180487 + (TA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr12 24102256 24102278 -120180211 + AT_rich Low_complexity Low_complexity 1 22 0 423 353 40 6 chr12 24103506 24103679 -120178810 + MIR SINE MIR 20 198 -64 211 281 194 56 chr12 24103738 24103934 -120178555 + MIR SINE MIR 6 228 -34 1926 138 45 0 chr12 24104396 24104687 -120177802 - AluJo SINE Alu -8 304 1 1527 225 87 18 chr12 24104906 24105341 -120177148 + MLT1C LTR MaLR 1 465 -2 220 309 172 50 chr12 24105416 24105794 -120176695 + L2 LINE L2 2252 2675 -639 1805 157 3 13 chr12 24105839 24106139 -120176350 + AluJb SINE Alu 2 298 -14 410 238 119 0 chr12 24106274 24106400 -120176089 + MER103 DNA DNA 1 141 -25 758 168 15 0 chr12 24107429 24107560 -120174929 + AluJb SINE Alu 3 135 -177 1743 97 12 8 chr12 24107560 24107819 -120174670 + AluY SINE Alu 1 260 -51 420 37 0 0 chr12 24107860 24107914 -120174575 + (TA)n Simple_repeat Simple_repeat 2 55 0 698 186 12 78 chr12 24107933 24108119 -120174370 + AluJb SINE Alu 145 312 0 187 333 21 21 chr12 24108728 24108821 -120173668 + MIR3 SINE MIR 110 202 -6 185 360 100 26 chr12 24110141 24110480 -120172009 + L2 LINE L2 1716 2079 -1235 1004 263 59 17 chr12 24110524 24110813 -120171676 + MLT1F1 LTR MaLR 1 301 -266 21 57 0 0 chr12 24110813 24110848 -120171641 + AT_rich Low_complexity Low_complexity 1 35 0 362 188 0 0 chr12 24110848 24110917 -120171572 + MLT1F1 LTR MaLR 491 559 -8 293 139 0 0 chr12 24110983 24111026 -120171463 + MLT1F1 LTR MaLR 517 559 -8 295 346 79 20 chr12 24111106 24111360 -120171129 + L2 LINE L2 2148 2416 -898 307 306 39 50 chr12 24112687 24112867 -120169622 - MIR SINE MIR -70 192 15 2334 206 21 22 chr12 24114357 24114962 -120167527 + MLT2B3 LTR ERVL 1 520 0 24 32 0 0 chr12 24115577 24115608 -120166881 + AT_rich Low_complexity Low_complexity 1 31 0 270 267 0 99 chr12 24116273 24116374 -120166115 + MIR SINE MIR 37 128 -80 193 327 115 39 chr12 24117429 24117585 -120164904 - MIR SINE MIR -36 226 59 585 345 170 22 chr12 24118782 24119277 -120163212 + L2 LINE L2 1851 2418 -896 25 0 0 0 chr12 24119659 24119684 -120162805 + AT_rich Low_complexity Low_complexity 1 25 0 2385 76 0 3 chr12 24119689 24119991 -120162498 + AluY SINE Alu 1 301 -10 21 0 0 0 chr12 24120123 24120144 -120162345 + AT_rich Low_complexity Low_complexity 1 21 0 2100 129 0 13 chr12 24120186 24120503 -120161986 - AluSq SINE Alu 0 313 1 1231 247 87 78 chr12 24120581 24120803 -120161686 + L2 LINE L2 2475 2694 -619 1854 112 0 4 chr12 24120803 24121053 -120161436 + AluSg SINE Alu 35 283 -27 1231 247 87 78 chr12 24121053 24121651 -120160838 + L2 LINE L2 2694 3313 0 736 341 70 24 chr12 24123196 24123565 -120158924 + L2 LINE L2 2928 3313 0 305 336 126 8 chr12 24123569 24123807 -120158682 + L2 LINE L2 2182 2447 -867 243 0 0 0 chr12 24125638 24125651 -120156838 + (CA)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr12 24125651 24125678 -120156811 + (CA)n Simple_repeat Simple_repeat 2 28 0 2090 108 7 19 chr12 24125692 24125999 -120156490 - AluSx SINE Alu -9 303 1 2172 120 10 0 chr12 24126340 24126648 -120155841 + AluY SINE Alu 1 311 0 790 152 129 29 chr12 24126782 24126953 -120155536 + MER5A DNA MER1_type 2 189 0 303 104 0 0 chr12 24127433 24127481 -120155008 + (CAAAG)n Simple_repeat Simple_repeat 3 50 0 29 28 0 0 chr12 24130387 24130423 -120152066 + AT_rich Low_complexity Low_complexity 1 36 0 270 56 0 0 chr12 24133223 24133259 -120149230 + (TG)n Simple_repeat Simple_repeat 2 37 0 1603 236 86 52 chr12 24134121 24134711 -120147778 + LTR9 LTR ERV1 1 610 -2 34 0 0 0 chr12 24135412 24135446 -120147043 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr12 24135646 24135674 -120146815 + AT_rich Low_complexity Low_complexity 1 28 0 223 355 130 0 chr12 24135752 24135890 -120146599 - MIR SINE MIR -60 202 47 241 255 0 0 chr12 24138279 24138330 -120144159 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 263 49 24 0 chr12 24139298 24139339 -120143150 + (TA)n Simple_repeat Simple_repeat 2 43 0 203 147 0 0 chr12 24140064 24140098 -120142391 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 231 333 15 0 chr12 24140148 24140214 -120142275 + L2 LINE L2 3242 3308 -5 69 48 0 0 chr12 24141261 24141365 -120141124 + AT_rich Low_complexity Low_complexity 1 104 0 24 0 0 0 chr12 24141768 24141792 -120140697 + AT_rich Low_complexity Low_complexity 1 24 0 837 159 0 0 chr12 24143861 24144014 -120138475 + FLAM_C SINE Alu 2 154 0 21 36 0 0 chr12 24144464 24144492 -120137997 + AT_rich Low_complexity Low_complexity 1 28 0 2366 154 12 12 chr12 24144492 24144716 -120137773 - L1MA7 LINE L1 -270 6021 5795 357 24 0 0 chr12 24144716 24144758 -120137731 + (TG)n Simple_repeat Simple_repeat 2 43 0 2366 154 12 12 chr12 24144758 24144935 -120137554 - L1MA7 LINE L1 -495 5796 5620 23 0 0 0 chr12 24145277 24145300 -120137189 + AT_rich Low_complexity Low_complexity 1 23 0 24 41 0 20 chr12 24145561 24145588 -120136901 + AT_rich Low_complexity Low_complexity 1 28 -20 428 126 115 0 chr12 24145588 24145675 -120136814 - L1MA4 LINE L1 -8 6292 6196 24 41 0 20 chr12 24145675 24145696 -120136793 + AT_rich Low_complexity Low_complexity 28 48 0 439 303 38 0 chr12 24146504 24146636 -120135853 - MER115 DNA AcHobo -27 666 530 3345 176 5 34 chr12 24146636 24147280 -120135209 + L1MB3 LINE L1 5420 6044 -139 541 248 23 0 chr12 24147280 24147409 -120135080 - MER115 DNA AcHobo -157 536 405 218 278 28 14 chr12 24147532 24147604 -120134885 - L2 LINE L2 -274 2998 2926 2176 203 73 32 chr12 24147793 24148163 -120134326 - L1MB7 LINE L1 -294 5890 5484 2178 110 0 7 chr12 24148163 24148463 -120134026 - AluSg SINE Alu -12 298 1 2176 203 73 32 chr12 24148463 24148693 -120133796 - L1MB7 LINE L1 -700 5484 5265 2453 124 14 11 chr12 24148702 24149138 -120133351 - L1PA13 LINE L1 -2 6161 5627 1705 148 13 34 chr12 24150211 24150509 -120131980 + AluJo SINE Alu 14 305 -7 203 258 45 0 chr12 24152044 24152110 -120130379 - MIR SINE MIR -128 134 66 222 167 42 0 chr12 24152387 24152435 -120130054 + (TTG)n Simple_repeat Simple_repeat 2 51 0 462 306 121 35 chr12 24152650 24152882 -120129607 - MIR SINE MIR -1 261 10 200 370 30 0 chr12 24153785 24153885 -120128604 - L2 LINE L2 -554 2760 2658 369 304 78 0 chr12 24154361 24154463 -120128026 - L2 LINE L2 0 3313 3204 1422 156 119 25 chr12 24154670 24154990 -120127499 + L1MB4 LINE L1 5831 6180 0 510 208 16 8 chr12 24157166 24157291 -120125198 + L1MB3 LINE L1 5343 5468 -703 2928 186 5 3 chr12 24157305 24157887 -120124602 + L1MB3 LINE L1 5601 6183 0 22 35 0 0 chr12 24157929 24157958 -120124531 + AT_rich Low_complexity Low_complexity 1 29 0 258 266 211 9 chr12 24158209 24158318 -120124171 + L1ME1 LINE L1 6011 6141 -25 2241 93 3 0 chr12 24159118 24159420 -120123069 - AluSg SINE Alu -7 303 1 186 224 0 0 chr12 24159590 24159639 -120122850 + GA-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr12 24160185 24160206 -120122283 + AT_rich Low_complexity Low_complexity 1 21 0 227 299 14 36 chr12 24160230 24160348 -120122141 - MIR SINE MIR -66 142 50 758 117 70 0 chr12 24160353 24160481 -120122008 + MER85 DNA T2_type 2 138 -1 426 328 24 0 chr12 24161079 24161259 -120121230 - MIR SINE MIR -41 221 37 24 0 0 0 chr12 24162314 24162338 -120120151 + AT_rich Low_complexity Low_complexity 1 24 0 233 303 0 53 chr12 24162953 24163029 -120119460 + MIR3 SINE MIR 99 170 -38 21 36 0 0 chr12 24163599 24163627 -120118862 + AT_rich Low_complexity Low_complexity 1 28 0 753 244 94 5 chr12 24164155 24164356 -120118133 - MIR SINE MIR -42 220 2 21 36 0 0 chr12 24166435 24166463 -120116026 + AT_rich Low_complexity Low_complexity 1 28 0 218 214 0 0 chr12 24167124 24167166 -120115323 + GA-rich Low_complexity Low_complexity 3 44 0 970 307 66 39 chr12 24167651 24168088 -120114401 - L2 LINE L2 -2 3311 2863 383 333 71 85 chr12 24168444 24168810 -120113679 - L2 LINE L2 0 3272 2912 486 329 55 79 chr12 24168820 24168880 -120113609 - L2 LINE L2 -559 2755 2695 2438 44 0 25 chr12 24168880 24169201 -120113288 + L1PA5 LINE L1 5841 6153 -1 486 329 55 79 chr12 24169201 24169648 -120112841 - L2 LINE L2 -619 2695 2260 22 0 0 0 chr12 24169674 24169696 -120112793 + AT_rich Low_complexity Low_complexity 1 22 0 232 338 48 14 chr12 24170407 24170552 -120111937 + MIR SINE MIR 111 260 -2 26 64 0 0 chr12 24172716 24172763 -120109726 + AT_rich Low_complexity Low_complexity 1 47 0 201 161 0 0 chr12 24174701 24174732 -120107757 + (CA)n Simple_repeat Simple_repeat 2 32 0 308 286 13 0 chr12 24175423 24175500 -120106989 - L2 LINE L2 -7 3265 3188 245 286 51 20 chr12 24175508 24175606 -120106883 + MER69A DNA AcHobo 1 101 -76 * 357 172 121 121 chr12 24175588 24175786 -120106703 + MER69 DNA AcHobo 2328 2525 -1 1317 330 126 46 chr12 24175795 24176321 -120106168 - L2 LINE L2 -99 3173 2691 2782 3 0 0 chr12 24176321 24176624 -120105865 + AluYa5 SINE Alu 1 303 -8 1317 330 126 46 chr12 24176624 24177378 -120105111 - L2 LINE L2 -581 2691 1791 361 281 34 0 chr12 24177384 24177473 -120105016 + MER5A DNA MER1_type 7 98 -91 1076 274 160 13 chr12 24177474 24177950 -120104539 + MLT1F1 LTR MaLR 5 543 -24 195 322 17 0 chr12 24177977 24178036 -120104453 + MER5A DNA MER1_type 124 183 -6 368 224 0 12 chr12 24178126 24178211 -120104278 - L2 LINE L2 -1625 1689 1606 10815 161 30 30 chr12 24179351 24179678 -120102811 - Tigger1 DNA MER2_type 0 2418 2093 1595 195 26 0 chr12 24179678 24179980 -120102509 - AluJo SINE Alu 0 312 3 10815 161 30 30 chr12 24179980 24181587 -120100902 - Tigger1 DNA MER2_type -325 2093 483 1685 156 28 7 chr12 24181595 24181883 -120100606 - Tigger1 DNA MER2_type -2123 295 2 1617 221 8 28 chr12 24181922 24182320 -120100169 + MLT1B LTR MaLR 1 390 0 260 384 30 44 chr12 24184312 24184515 -120097974 - L2 LINE L2 -528 2786 2587 290 204 32 65 chr12 24184723 24184743 -120097746 - MIR SINE MIR -39 223 204 258 105 0 0 chr12 24184743 24184781 -120097708 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 290 204 32 65 chr12 24184781 24184853 -120097636 - MIR SINE MIR -58 204 134 182 194 0 0 chr12 24185300 24185331 -120097158 + L2 LINE L2 3263 3293 -20 558 325 106 58 chr12 24185625 24186278 -120096211 + L2 LINE L2 1831 2514 -800 719 89 18 0 chr12 24186515 24186627 -120095862 + (TGGA)n Simple_repeat Simple_repeat 1 114 0 1625 177 136 3 chr12 24187054 24187370 -120095119 - MLT1A1 LTR MaLR -7 358 1 471 286 48 0 chr12 24187377 24187503 -120094986 + L2 LINE L2 3141 3272 0 27 0 0 0 chr12 24188506 24188533 -120093956 + AT_rich Low_complexity Low_complexity 1 27 0 244 326 49 36 chr12 24189542 24189719 -120092770 - MIR SINE MIR -61 201 32 308 242 30 85 chr12 24189974 24190139 -120092350 + L1ME4a LINE L1 5681 5836 -1972 234 278 52 17 chr12 24190294 24190409 -120092080 + L1ME4a LINE L1 5914 6032 -89 344 273 120 42 chr12 24190683 24190899 -120091590 + MLT1J LTR MaLR 279 511 0 2158 110 7 7 chr12 24192150 24192460 -120090029 + AluSx SINE Alu 1 310 -2 1897 126 48 0 chr12 24193230 24193524 -120088965 + AluSx SINE Alu 1 308 -4 273 313 75 55 chr12 24193820 24194021 -120088468 - MIR SINE MIR -37 225 21 419 272 24 16 chr12 24194285 24194410 -120088079 - MER119 DNA MER1_type 0 583 458 522 267 92 0 chr12 24194417 24194537 -120087952 - MER119 DNA MER1_type -452 131 1 216 158 0 0 chr12 24195672 24195710 -120086779 + (TA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr12 24196284 24196312 -120086177 + AT_rich Low_complexity Low_complexity 1 28 0 22 106 0 0 chr12 24197308 24197393 -120085096 + AT_rich Low_complexity Low_complexity 1 85 0 192 40 0 0 chr12 24198286 24198311 -120084178 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 408 351 28 24 chr12 24199359 24199570 -120082919 - L3 LINE CR1 -129 1448 1237 270 305 91 64 chr12 24199584 24199771 -120082718 - MIR3 SINE MIR 0 208 17 245 358 183 12 chr12 24199831 24200071 -120082418 - L3 LINE CR1 -422 1155 875 385 297 7 35 chr12 24200211 24200356 -120082133 - L2 LINE L2 -15 3298 3158 230 267 33 11 chr12 24200605 24200695 -120081794 + GA-rich Low_complexity Low_complexity 1 92 0 271 360 43 12 chr12 24201043 24201204 -120081285 - MIR3 SINE MIR -12 196 31 582 221 39 0 chr12 24201445 24201572 -120080917 - MER82 DNA MER2_type -2 651 520 * 1937 208 16 3 chr12 24201570 24201949 -120080540 - MER82 DNA MER2_type -269 384 1 300 313 83 71 chr12 24202587 24202913 -120079576 - L2 LINE L2 -4 3268 2939 187 338 99 49 chr12 24203629 24204306 -120078183 - L2 LINE L2 -1268 2046 1336 206 121 0 0 chr12 24205603 24205636 -120076853 + (A)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr12 24207206 24207227 -120075262 + AT_rich Low_complexity Low_complexity 1 21 0 899 147 35 6 chr12 24207299 24207469 -120075020 + L1MB7 LINE L1 5991 6165 -19 242 295 13 83 chr12 24207582 24207738 -120074751 - MIR SINE MIR -40 222 78 2252 100 0 0 chr12 24207874 24208175 -120074314 - AluSq SINE Alu -12 301 1 1368 168 42 23 chr12 24208915 24209224 -120073265 + L1 LINE L1 4819 5133 -1013 1140 179 49 0 chr12 24209221 24209444 -120073045 + L1MA9 LINE L1 6040 6273 -39 * 259 309 0 0 chr12 24209598 24209666 -120072823 - L2 LINE L2 -19 3294 3227 288 365 141 6 chr12 24209921 24210091 -120072398 + L2 LINE L2 3075 3267 -5 21 0 0 0 chr12 24211802 24211823 -120070666 + AT_rich Low_complexity Low_complexity 1 21 0 260 228 13 25 chr12 24213672 24213751 -120068738 + CT-rich Low_complexity Low_complexity 2 79 0 267 330 52 17 chr12 24217274 24217389 -120065100 + L2 LINE L2 3190 3308 -5 364 277 138 25 chr12 24217392 24217551 -120064938 - L3b LINE CR1 -96 1487 1311 183 297 109 0 chr12 24218577 24218641 -120063848 + L2 LINE L2 2990 3060 -212 214 372 83 42 chr12 24219199 24219535 -120062954 + L2 LINE L2 2828 3177 -95 578 288 81 77 chr12 24219850 24220643 -120061846 - L1MEd LINE L1 -2476 3653 2845 2065 118 0 13 chr12 24220643 24220947 -120061542 + AluSx SINE Alu 1 300 -12 578 288 81 77 chr12 24220947 24221614 -120060875 - L1MEd LINE L1 -3284 2845 2183 1877 151 0 3 chr12 24221631 24221916 -120060573 - AluSx SINE Alu -28 284 1 638 274 65 21 chr12 24222644 24223019 -120059470 - L1MEd LINE L1 -4903 1216 960 592 261 134 25 chr12 24223054 24223330 -120059159 - L1ME1 LINE L1 -12 6221 5913 1891 163 3 3 chr12 24223331 24223626 -120058863 + AluJb SINE Alu 3 297 -15 741 211 127 9 chr12 24223626 24223839 -120058650 - L1ME1 LINE L1 -1291 4924 4687 * 4377 243 80 48 chr12 24223838 24224152 -120058337 - L1ME1 LINE L1 -2022 4193 3891 2629 52 0 0 chr12 24224152 24224461 -120058028 + AluY SINE Alu 1 309 -2 4377 243 80 48 chr12 24224461 24226049 -120056440 - L1ME1 LINE L1 -2324 3891 2258 1662 190 0 0 chr12 24226049 24226339 -120056150 - AluSx SINE Alu -18 294 5 4377 243 80 48 chr12 24226339 24226646 -120055843 - L1ME1 LINE L1 -3957 2258 1962 315 264 187 33 chr12 24226658 24226840 -120055649 - L1ME1 LINE L1 -4919 1477 1268 1871 261 155 45 chr12 24226844 24227906 -120054583 - L1ME1 LINE L1 -5180 1216 38 562 272 41 72 chr12 24228392 24228656 -120053833 + MLT1I LTR MaLR 63 304 -105 21 0 0 0 chr12 24229334 24229355 -120053134 + AT_rich Low_complexity Low_complexity 1 21 0 255 174 0 29 chr12 24229388 24229457 -120053032 - L1MC4 LINE L1 -1336 6706 6640 23 0 0 0 chr12 24229659 24229682 -120052807 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 24229844 24229865 -120052624 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 24231244 24231265 -120051224 + (TG)n Simple_repeat Simple_repeat 1 21 0 237 33 0 0 chr12 24232220 24232250 -120050239 + (CA)n Simple_repeat Simple_repeat 2 31 0 242 185 0 0 chr12 24233162 24233216 -120049273 - LTR66 LTR ERVL -163 447 394 219 69 0 0 chr12 24233973 24234002 -120048487 + (CA)n Simple_repeat Simple_repeat 2 30 0 227 390 92 29 chr12 24236793 24237313 -120045176 - L2 LINE L2 -340 2974 2422 1672 173 0 19 chr12 24237582 24237895 -120044594 - AluJo SINE Alu -3 309 3 222 139 23 0 chr12 24238595 24238638 -120043851 + (CA)n Simple_repeat Simple_repeat 2 45 0 6050 39 0 0 chr12 24238738 24239465 -120043024 - L1PA5 LINE L1 -5 6149 5423 387 318 142 14 chr12 24240375 24240586 -120041903 - MIR SINE MIR -5 257 20 289 311 53 30 chr12 24241043 24241175 -120041314 - MIR SINE MIR -105 157 23 1627 209 36 47 chr12 24241431 24241901 -120040588 + MLT1C LTR MaLR 1 465 -2 222 91 0 0 chr12 24242140 24242173 -120040316 + (TG)n Simple_repeat Simple_repeat 2 34 0 313 141 28 0 chr12 24242189 24242260 -120040229 + (TA)n Simple_repeat Simple_repeat 2 74 0 2001 143 7 0 chr12 24242303 24242603 -120039886 + AluSx SINE Alu 1 302 -10 1916 147 7 0 chr12 24242833 24243139 -120039350 + AluSx SINE Alu 1 308 -4 1858 67 25 0 chr12 24243547 24243813 -120038676 + AluY SINE Alu 38 309 0 216 0 0 0 chr12 24244302 24244326 -120038163 + (A)n Simple_repeat Simple_repeat 1 24 0 266 272 84 73 chr12 24245157 24245348 -120037141 - MIR SINE MIR -30 232 40 22 0 0 0 chr12 24246715 24246737 -120035752 + AT_rich Low_complexity Low_complexity 1 22 0 1583 142 6 107 chr12 24247954 24248300 -120034189 + AluJo SINE Alu 2 312 0 289 318 132 16 chr12 24249418 24249547 -120032942 + MIR3 SINE MIR 34 177 -31 2286 78 3 0 chr12 24249563 24249874 -120032615 - AluSp SINE Alu 0 312 1 24 53 0 0 chr12 24351011 24351049 -119931440 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr12 24352106 24352127 -119930362 + (T)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr12 24352211 24352236 -119930253 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr12 24353179 24353213 -119929276 + (TA)n Simple_repeat Simple_repeat 2 35 0 1426 167 115 15 chr12 24353463 24353634 -119928855 - AluJo SINE Alu 0 312 160 261 0 0 0 chr12 24353634 24353663 -119928826 + (GCTG)n Simple_repeat Simple_repeat 3 31 0 644 82 0 10 chr12 24353663 24353760 -119928729 + (CAGA)n Simple_repeat Simple_repeat 1 96 0 1426 167 115 15 chr12 24353760 24353856 -119928633 - AluJo SINE Alu -151 161 17 3649 246 47 29 chr12 24354942 24356089 -119926400 - L1MEc LINE L1 -2685 3530 2388 1497 192 7 36 chr12 24356089 24356391 -119926098 + AluJb SINE Alu 1 293 -19 3649 246 47 29 chr12 24356391 24356762 -119925727 - L1MEc LINE L1 -3827 2388 2025 883 180 21 31 chr12 24356767 24356961 -119925528 - AluJb SINE Alu 0 312 121 255 270 110 0 chr12 24358101 24358201 -119924288 - HAL1b LINE L1 -419 929 819 24 0 0 0 chr12 24358217 24358241 -119924248 + AT_rich Low_complexity Low_complexity 1 24 0 2083 135 0 0 chr12 24358328 24358632 -119923857 - AluSx SINE Alu -8 304 1 541 290 0 12 chr12 24358809 24358978 -119923511 - FRAM SINE Alu 0 176 10 198 103 0 0 chr12 24358982 24359011 -119923478 + (GCTG)n Simple_repeat Simple_repeat 3 31 0 189 0 0 0 chr12 24359865 24359886 -119922603 + (A)n Simple_repeat Simple_repeat 1 21 0 1988 133 0 40 chr12 24361282 24361606 -119920883 - AluJo SINE Alu -1 311 1 186 156 0 0 chr12 24361669 24361714 -119920775 + A-rich Low_complexity Low_complexity 1 45 0 207 0 0 0 chr12 24361932 24361955 -119920534 + (T)n Simple_repeat Simple_repeat 1 23 0 6804 231 69 38 chr12 24362607 24364390 -119918099 + L1ME2 LINE L1 2936 4662 -1500 2130 107 45 0 chr12 24364390 24364680 -119917809 + AluSg SINE Alu 1 303 -7 6804 231 69 38 chr12 24364680 24364743 -119917746 + L1ME2 LINE L1 4662 4722 -1440 1229 186 0 128 chr12 24364743 24365087 -119917402 + AluJo SINE Alu 1 300 -2 6804 231 69 38 chr12 24365087 24366328 -119916161 + L1ME2 LINE L1 4722 6155 -7 261 346 30 38 chr12 24366368 24366501 -119915988 + L2 LINE L2 3136 3267 -5 493 380 69 20 chr12 24366518 24367055 -119915434 - L2 LINE L2 -917 2397 1835 192 40 0 0 chr12 24367743 24367768 -119914721 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 225 65 0 0 chr12 24368032 24368063 -119914426 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 846 294 55 41 chr12 24368288 24368946 -119913543 - L2 LINE L2 -94 3219 2497 204 267 13 27 chr12 24369901 24369976 -119912513 + (TATG)n Simple_repeat Simple_repeat 2 75 0 218 360 63 18 chr12 24371312 24371423 -119911066 + L2 LINE L2 3148 3263 -9 213 274 85 28 chr12 24372063 24372169 -119910320 - L2 LINE L2 -7 3265 3154 198 143 0 0 chr12 24374465 24374500 -119907989 + (CA)n Simple_repeat Simple_repeat 2 36 0 327 214 23 92 chr12 24374909 24375040 -119907449 + LTR65 LTR ERV1 4 125 -544 308 237 82 10 chr12 24375310 24375407 -119907082 + LTR65 LTR ERV1 560 663 -6 465 288 34 7 chr12 24376367 24376513 -119905976 + MIR SINE MIR 48 197 -65 2118 110 3 3 chr12 24377287 24377597 -119904892 + AluSg SINE Alu 1 310 0 180 0 0 0 chr12 24379939 24379959 -119902530 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3312 256 40 83 chr12 24382487 24384460 -119898029 + L1MEc LINE L1 49 1932 -4464 1569 165 0 72 chr12 24384460 24384781 -119897708 + AluJo SINE Alu 1 298 -14 3312 256 40 83 chr12 24384781 24384854 -119897635 + L1MEc LINE L1 1932 2007 -4389 485 234 28 35 chr12 24384858 24384999 -119897490 + AluJb SINE Alu 113 252 -60 182 37 37 0 chr12 24385642 24385669 -119896820 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 24 0 0 0 chr12 24385830 24385854 -119896635 + AT_rich Low_complexity Low_complexity 1 24 0 969 166 132 31 chr12 24386526 24386815 -119895674 - MER33 DNA MER1_type -6 318 1 305 225 0 38 chr12 24387383 24387463 -119895026 + MIR3 SINE MIR 125 201 -7 204 180 16 49 chr12 24387744 24387805 -119894684 + A-rich Low_complexity Low_complexity 1 59 0 378 304 44 150 chr12 24387990 24388490 -119893999 - L2 LINE L2 -1 3271 2825 839 94 86 0 chr12 24388787 24388915 -119893574 + MER85 DNA T2_type 1 139 0 754 207 36 47 chr12 24389111 24389304 -119893185 - AluJo SINE Alu -2 310 120 1601 220 72 37 chr12 24389578 24390064 -119892425 - MLT1D LTR MaLR 0 505 3 886 335 121 19 chr12 24390948 24391390 -119891099 - L2 LINE L2 -8 3305 2909 1663 188 0 0 chr12 24391390 24391683 -119890806 + AluJo SINE Alu 1 293 -19 886 335 121 19 chr12 24391683 24392143 -119890346 - L2 LINE L2 -404 2909 2310 1393 174 3 68 chr12 24392971 24393264 -119889225 + AluSx SINE Alu 1 274 -38 216 0 0 0 chr12 24393269 24393293 -119889196 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 1568 210 41 25 chr12 24393405 24393772 -119888717 + MLT1A2 LTR MaLR 2 374 0 284 286 26 0 chr12 24393924 24394001 -119888488 + GA-rich Low_complexity Low_complexity 4 82 0 321 330 96 42 chr12 24394044 24394356 -119888133 + L2 LINE L2 2598 2926 -388 243 248 58 107 chr12 24394591 24394712 -119887777 + L2 LINE L2 3155 3269 -3 1318 155 4 39 chr12 24394951 24395183 -119887306 + AluJo SINE Alu 1 224 -88 454 250 28 9 chr12 24395226 24395334 -119887155 - MER46C DNA MER2_type -79 259 150 1764 154 3 46 chr12 24397620 24397743 -119884746 + AluJb SINE Alu 1 128 -184 678 47 0 0 chr12 24397743 24397829 -119884660 + (TATG)n Simple_repeat Simple_repeat 2 87 0 1764 154 3 46 chr12 24397829 24398029 -119884460 + AluJb SINE Alu 128 310 -2 214 274 0 0 chr12 24398299 24398361 -119884128 + (TA)n Simple_repeat Simple_repeat 2 63 0 1550 189 11 14 chr12 24399295 24399576 -119882913 + AluJo SINE Alu 5 284 -28 3484 183 61 25 chr12 24400111 24400865 -119881624 + L1MB5 LINE L1 5385 6165 -9 568 295 62 13 chr12 24400884 24401108 -119881381 + L1MEc LINE L1 -563 4294966967 -6613 233 330 11 11 chr12 24401189 24401280 -119881209 + L1MEc LINE L1 178 268 -6016 * 357 321 92 48 chr12 24401276 24401647 -119880842 + L1MEc LINE L1 223 609 -5671 1994 240 56 56 chr12 24401728 24402401 -119880088 + L1MEc LINE L1 619 1292 -5092 2156 109 3 10 chr12 24402401 24402704 -119879785 + AluSg1 SINE Alu 1 301 -8 1994 240 56 56 chr12 24402704 24403018 -119879471 + L1MEc LINE L1 1291 1604 -4780 333 0 0 0 chr12 24403019 24403056 -119879433 + (TG)n Simple_repeat Simple_repeat 2 38 0 1940 172 25 20 chr12 24403081 24403489 -119879000 + L1MA9 LINE L1 5896 6305 -7 747 275 78 58 chr12 24403595 24403940 -119878549 + L1MEc LINE L1 1577 2079 -4484 225 188 62 12 chr12 24403949 24404029 -119878460 + (TA)n Simple_repeat Simple_repeat 1 84 0 902 254 75 69 chr12 24404067 24404744 -119877745 + L1MEc LINE L1 1898 2578 -3985 842 190 58 116 chr12 24404770 24404985 -119877504 + L1MEc LINE L1 2813 2998 -3384 1533 200 4 7 chr12 24404985 24405260 -119877229 - AluJb SINE Alu -28 284 11 842 190 58 116 chr12 24405260 24405423 -119877066 + L1MEc LINE L1 2998 3169 -3213 575 205 116 0 chr12 24405427 24405539 -119876950 + FLAM_C SINE Alu 1 125 -18 828 217 0 33 chr12 24405698 24405878 -119876611 + FRAM SINE Alu 3 176 0 6759 218 50 55 chr12 24405890 24409143 -119873346 + L1MB8 LINE L1 3013 6241 -6 294 340 42 56 chr12 24409332 24409476 -119873013 + L2 LINE L2 2916 3057 -256 227 206 48 48 chr12 24409562 24409625 -119872864 + L2 LINE L2 3251 3313 0 2187 91 3 0 chr12 24410734 24411020 -119871469 + AluSx SINE Alu 5 291 -21 807 161 0 0 chr12 24411020 24411200 -119871289 + (TA)n Simple_repeat Simple_repeat 1 180 0 699 195 0 0 chr12 24411220 24411498 -119870991 + (TA)n Simple_repeat Simple_repeat 1 278 0 324 70 0 0 chr12 24411491 24411534 -119870955 + (CA)n Simple_repeat Simple_repeat 2 44 0 * 1193 232 64 90 chr12 24412476 24413023 -119869466 + MLT1F LTR MaLR 2 534 -8 194 372 66 15 chr12 24413037 24413174 -119869315 + MIR3 SINE MIR 14 157 -51 372 258 46 66 chr12 24413918 24414069 -119868420 + L2 LINE L2 3166 3313 0 1892 155 0 13 chr12 24414363 24414666 -119867823 + AluSx SINE Alu 1 299 -13 206 225 0 0 chr12 24414968 24415008 -119867481 + (CA)n Simple_repeat Simple_repeat 1 40 0 408 111 0 0 chr12 24418771 24418834 -119863655 + (TC)n Simple_repeat Simple_repeat 2 64 0 2072 115 10 14 chr12 24421033 24421312 -119861177 + AluSx SINE Alu 7 286 -26 310 68 0 0 chr12 24421312 24421356 -119861133 + (TAAAA)n Simple_repeat Simple_repeat 2 110 0 2072 115 10 14 chr12 24421356 24421372 -119861117 + AluSx SINE Alu 286 301 -11 2009 150 0 6 chr12 24422224 24422537 -119859952 + AluSx SINE Alu 1 311 -1 182 177 0 161 chr12 24422537 24422590 -119859899 - MIR SINE MIR -145 63 20 1363 193 36 18 chr12 24422699 24422979 -119859510 - AluJb SINE Alu -23 289 5 234 322 0 0 chr12 24423138 24423197 -119859292 - L3 LINE CR1 -1 1576 1518 620 245 0 34 chr12 24425699 24425846 -119856643 - L2 LINE L2 -2 3311 3170 324 269 0 0 chr12 24427542 24427609 -119854880 - L2 LINE L2 -52 3261 3195 853 164 0 27 chr12 24430179 24430325 -119852164 + FLAM_C SINE Alu 1 142 -1 275 258 247 10 chr12 24430890 24431084 -119851405 + L2 LINE L2 2093 2332 -982 353 262 47 19 chr12 24431952 24432059 -119850430 + L2 LINE L2 3163 3272 0 21 36 0 0 chr12 24432976 24433004 -119849485 + AT_rich Low_complexity Low_complexity 1 28 0 1411 248 0 0 chr12 24433004 24433286 -119849203 - AluJo SINE Alu -30 282 1 854 294 24 0 chr12 24433622 24433870 -119848619 - MIR SINE MIR -5 257 4 4195 152 26 17 chr12 24433935 24435283 -119847206 + L1MA8 LINE L1 4668 6028 -263 212 294 76 43 chr12 24443562 24443654 -119838835 - L2 LINE L2 0 3272 3178 28 71 0 0 chr12 24443733 24443789 -119838700 + AT_rich Low_complexity Low_complexity 1 56 0 261 316 25 0 chr12 24443986 24444065 -119838424 + MIR SINE MIR 63 143 -119 2375 73 0 3 chr12 24444327 24444630 -119837859 + AluY SINE Alu 1 302 -9 250 339 9 18 chr12 24447677 24447786 -119834703 + MIR SINE MIR 155 262 0 231 246 0 53 chr12 24448520 24448577 -119833912 + L2 LINE L2 3219 3272 0 839 309 20 4 chr12 24448850 24449096 -119833393 + MIR SINE MIR 3 252 -10 1297 153 9 9 chr12 24449120 24449335 -119833154 - AluJb SINE Alu -97 215 1 2193 89 0 41 chr12 24450409 24450723 -119831766 - AluSq SINE Alu -12 301 1 483 362 24 14 chr12 24451821 24452028 -119830461 - MIR SINE MIR -6 256 48 2700 183 0 56 chr12 24452168 24452796 -119829693 + L1MB8 LINE L1 5586 6178 0 288 0 0 0 chr12 24453376 24453408 -119829081 + (T)n Simple_repeat Simple_repeat 1 32 0 201 175 0 0 chr12 24453820 24453860 -119828629 + A-rich Low_complexity Low_complexity 1 40 0 255 288 160 0 chr12 24454437 24454562 -119827927 + MIR SINE MIR 106 250 -12 326 267 17 50 chr12 24455168 24455288 -119827201 + L1 LINE L1 3730 3845 -2301 532 317 75 46 chr12 24455484 24455922 -119826567 + L2 LINE L2 1707 2157 -1157 23 33 0 0 chr12 24456141 24456171 -119826318 + AT_rich Low_complexity Low_complexity 1 30 0 321 70 0 0 chr12 24456923 24456966 -119825523 - AluSq SINE Alu -8 292 250 1478 91 0 10 chr12 24456966 24457165 -119825324 - AluSq SINE Alu -116 197 1 609 347 36 5 chr12 24457527 24457749 -119824740 - MIR SINE MIR -14 248 20 2819 6 0 10 chr12 24460429 24460743 -119821746 + AluYa5 SINE Alu 1 311 0 22 35 0 0 chr12 24461187 24461216 -119821273 + AT_rich Low_complexity Low_complexity 1 29 0 180 77 0 0 chr12 24462525 24462551 -119819938 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 890 272 20 16 chr12 24463870 24464116 -119818373 - MIR SINE MIR -1 261 15 882 281 117 32 chr12 24464358 24464760 -119817729 + MLT1K LTR MaLR 142 577 -11 318 299 52 0 chr12 24466981 24467078 -119815411 + L2 LINE L2 3170 3271 -1 317 184 153 52 chr12 24467482 24467606 -119814883 + MIR SINE MIR 3 139 -69 185 323 86 54 chr12 24467950 24468043 -119814446 + MER5A DNA MER1_type 3 98 -91 26 30 0 0 chr12 24468293 24468326 -119814163 + AT_rich Low_complexity Low_complexity 1 33 0 354 236 62 42 chr12 24468361 24468505 -119813984 + L2 LINE L2 3165 3311 -2 2408 97 0 0 chr12 24469102 24469411 -119813078 + AluSc SINE Alu 1 309 0 186 250 83 0 chr12 24470141 24470189 -119812300 + MIR SINE MIR 202 253 -9 2319 76 3 3 chr12 24471598 24471902 -119810587 + AluSx SINE Alu 1 304 -8 315 314 126 0 chr12 24472733 24472892 -119809597 - MIR SINE MIR -2 260 82 2366 74 10 3 chr12 24472911 24473220 -119809269 - AluY SINE Alu 0 311 1 595 330 44 6 chr12 24473387 24473569 -119808920 - MIR3 SINE MIR -5 203 15 279 335 67 18 chr12 24473995 24474159 -119808330 - MIR3 SINE MIR -35 173 2 244 169 0 68 chr12 24475487 24475546 -119806943 + Alu SINE Alu 236 290 -10 198 0 0 0 chr12 24476119 24476141 -119806348 + (A)n Simple_repeat Simple_repeat 1 22 0 1720 167 0 43 chr12 24476468 24476792 -119805697 + AluJo SINE Alu 1 310 -2 277 331 50 44 chr12 24477781 24477962 -119804527 - L2 LINE L2 -508 2806 2625 21 0 0 0 chr12 24478497 24478518 -119803971 + AT_rich Low_complexity Low_complexity 1 21 0 273 260 13 26 chr12 24478536 24478613 -119803876 - MIR SINE MIR -56 152 77 23 33 0 0 chr12 24478806 24478836 -119803653 + AT_rich Low_complexity Low_complexity 1 30 0 320 343 114 0 chr12 24482807 24482947 -119799542 - L2 LINE L2 -3 3269 3114 267 340 47 52 chr12 24484443 24484634 -119797855 - MER91A DNA MER1_type -4 192 3 359 314 149 21 chr12 24484635 24484823 -119797666 - MIR SINE MIR -34 228 17 21 71 0 0 chr12 24484864 24484906 -119797583 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr12 24486371 24486399 -119796090 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr12 24488875 24488912 -119793577 + AT_rich Low_complexity Low_complexity 1 37 0 1335 110 0 0 chr12 24490766 24490939 -119791550 - AluSg/x SINE Alu -11 299 127 349 342 97 0 chr12 24491273 24491428 -119791061 - L3 LINE CR1 -73 1504 1335 249 232 132 114 chr12 24492118 24492338 -119790151 + MLT1H LTR MaLR 97 320 -229 247 241 23 35 chr12 24492391 24492478 -119790011 + MLT1H LTR MaLR 464 549 0 2447 64 0 6 chr12 24492576 24492889 -119789600 + AluY SINE Alu 1 311 0 672 272 75 36 chr12 24493069 24493276 -119789213 - L1ME LINE L1 -509 5655 5421 2312 101 0 0 chr12 24493276 24493582 -119788907 - AluSq SINE Alu -6 307 2 672 272 75 36 chr12 24493582 24493748 -119788741 - L1ME LINE L1 -743 5421 5263 651 313 54 20 chr12 24493880 24494289 -119788200 - L1ME LINE L1 -1050 5096 4674 252 238 60 0 chr12 24494392 24494427 -119788062 - HERVS71 LTR ERV1 -8436 542 511 351 0 0 0 chr12 24494427 24494466 -119788023 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 238 60 0 chr12 24494466 24494514 -119787975 - HERVS71 LTR ERV1 -8467 511 454 387 0 0 0 chr12 24494757 24494800 -119787689 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 2312 124 13 24 chr12 24494959 24495338 -119787151 + THE1C LTR MaLR 1 375 0 1097 94 0 0 chr12 24495461 24495610 -119786879 - L1PA7 LINE L1 -7 6147 5999 2235 202 20 22 chr12 24495620 24496124 -119786365 - L1MB4 LINE L1 -1 6179 5677 1998 214 36 22 chr12 24496140 24496952 -119785537 - L1M4 LINE L1 -453 5731 4909 910 299 100 27 chr12 24498601 24499002 -119783487 - LTR16A LTR ERVL 0 450 21 414 274 52 30 chr12 24499183 24499318 -119783171 + MIR3 SINE MIR 61 198 -10 2030 301 120 34 chr12 24499402 24500943 -119781546 + L2 LINE L2 1580 3313 0 1520 183 0 8 chr12 24502691 24502954 -119779535 - AluJo SINE Alu -13 299 39 21 0 0 0 chr12 24503394 24503415 -119779074 + AT_rich Low_complexity Low_complexity 1 21 0 2069 125 0 0 chr12 24504595 24504876 -119777613 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr12 24504877 24504900 -119777589 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 709 242 29 46 chr12 24505309 24505615 -119776874 + L1M4 LINE L1 5041 5341 -805 1944 120 3 3 chr12 24505845 24506178 -119776311 + AluSx SINE Alu 1 333 0 195 316 82 10 chr12 24506246 24506344 -119776145 + L3b LINE CR1 1286 1390 -193 189 0 0 0 chr12 24506873 24506894 -119775595 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 282 222 48 0 chr12 24509314 24509377 -119773112 - MSTD LTR MaLR -330 66 1 2118 105 0 49 chr12 24509940 24510265 -119772224 + AluY SINE Alu 1 309 -2 999 178 47 19 chr12 24510320 24510533 -119771956 - MER20 DNA MER1_type 0 219 1 202 368 63 17 chr12 24511074 24511248 -119771241 - L3 LINE CR1 -297 1280 1099 894 280 0 9 chr12 24511561 24511786 -119770703 + MER58A DNA MER1_type 1 223 -1 1856 137 7 36 chr12 24511859 24512166 -119770323 - AluJb SINE Alu -4 308 11 1374 212 85 40 chr12 24512317 24512845 -119769644 - MER20B DNA MER1_type 0 783 232 21 57 0 0 chr12 24512938 24512973 -119769516 + AT_rich Low_complexity Low_complexity 1 35 0 336 255 85 26 chr12 24513483 24513636 -119768853 + HAL1 LINE L1 837 998 -1509 1586 200 10 0 chr12 24513639 24513939 -119768550 + AluJb SINE Alu 10 312 0 1293 199 33 25 chr12 24513995 24514271 -119768218 + AluJo SINE Alu 5 282 -30 367 306 28 14 chr12 24514652 24514796 -119767693 + HAL1 LINE L1 1567 1712 -795 325 263 0 129 chr12 24515127 24515298 -119767191 + HAL1b LINE L1 721 869 -479 1055 201 122 72 chr12 24515538 24516021 -119766468 - Charlie4a DNA MER1_type -1 507 1 5871 146 11 25 chr12 24516316 24517109 -119765380 + L1MA7 LINE L1 5157 5932 -359 1838 131 4 0 chr12 24517109 24517384 -119765105 + AluSx SINE Alu 37 312 0 5871 146 11 25 chr12 24517384 24517738 -119764751 + L1MA7 LINE L1 5932 6290 -1 22 0 0 0 chr12 24518938 24518960 -119763529 + AT_rich Low_complexity Low_complexity 1 22 0 2381 229 52 21 chr12 24519014 24519668 -119762821 - L1ME3A LINE L1 -1 6169 5496 5200 130 16 38 chr12 24520590 24520942 -119761547 + HSMAR2 DNA Mariner 8 366 -936 2090 128 3 0 chr12 24520942 24521246 -119761243 + AluSg SINE Alu 1 305 -5 5200 130 16 38 chr12 24521246 24521784 -119760705 + HSMAR2 DNA Mariner 366 878 -424 28 29 0 0 chr12 24522005 24522040 -119760449 + AT_rich Low_complexity Low_complexity 1 35 0 225 94 0 0 chr12 24523898 24523930 -119758559 + (A)n Simple_repeat Simple_repeat 1 32 0 542 313 86 73 chr12 24525152 24525957 -119756532 + L2 LINE L2 1811 2625 -689 1823 155 0 11 chr12 24526442 24526766 -119755723 + AluJb SINE Alu 2 322 0 24 53 0 0 chr12 24577690 24577728 -119704761 + AT_rich Low_complexity Low_complexity 1 38 0 3990 243 19 12 chr12 24577781 24578897 -119703592 + L1MB7 LINE L1 3777 4899 -1247 1571 257 58 93 chr12 24578927 24579085 -119703404 + MER21B LTR ERV1 21 183 -680 2347 63 0 3 chr12 24579085 24579386 -119703103 + AluY SINE Alu 1 300 -11 1571 257 58 93 chr12 24579386 24579527 -119702962 + MER21B LTR ERV1 183 327 -536 1872 135 0 17 chr12 24579527 24579816 -119702673 + AluSx SINE Alu 4 287 -25 1571 257 58 93 chr12 24579816 24580259 -119702230 + MER21B LTR ERV1 327 738 -125 3791 201 36 19 chr12 24580288 24581550 -119700939 + L1MB7 LINE L1 4901 6184 0 1385 176 14 11 chr12 24582059 24582343 -119700146 + L1MA3 LINE L1 6020 6304 -1 276 283 156 15 chr12 24582748 24582889 -119699600 + MIR SINE MIR 3 157 -51 391 306 181 10 chr12 24583791 24583990 -119698499 - MIR SINE MIR -10 252 20 376 308 0 0 chr12 24584235 24584326 -119698163 + L2 LINE L2 3223 3313 0 782 298 180 6 chr12 24584456 24584989 -119697500 - L2 LINE L2 0 3313 2692 313 299 21 0 chr12 24585059 24585156 -119697333 - MER20B DNA MER1_type -640 143 45 707 284 167 13 chr12 24585158 24585457 -119697032 - L2 LINE L2 -631 2683 2339 2054 127 0 0 chr12 24586274 24586580 -119695909 - AluSx SINE Alu 0 306 1 315 49 0 0 chr12 24586658 24586699 -119695790 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 258 81 0 0 chr12 24588458 24588495 -119693994 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 285 124 58 chr12 24591544 24591681 -119690808 + MIR SINE MIR 67 212 -50 425 329 50 43 chr12 24592569 24592849 -119689640 + MER102b DNA MER1_type 48 329 -12 207 0 0 0 chr12 24594242 24594265 -119688224 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 678 210 65 52 chr12 24594270 24594518 -119687971 + L1MC4a LINE L1 5821 6071 -1737 231 88 0 0 chr12 24596157 24596191 -119686298 + (CA)n Simple_repeat Simple_repeat 1 34 0 207 100 0 0 chr12 24596375 24596405 -119686084 + (A)n Simple_repeat Simple_repeat 1 30 0 1853 170 6 10 chr12 24596911 24597259 -119685230 - AluJo SINE Alu 0 347 1 1982 92 4 22 chr12 24597619 24597891 -119684598 - AluSx SINE Alu -45 267 1 924 163 22 70 chr12 24597991 24598218 -119684271 + MER20 DNA MER1_type 4 219 0 22 0 0 0 chr12 24598480 24598502 -119683987 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 24598990 24599012 -119683477 + AT_rich Low_complexity Low_complexity 1 22 0 2045 95 0 32 chr12 24599116 24599400 -119683089 + AluY SINE Alu 1 275 -36 1431 202 0 18 chr12 24601857 24602129 -119680360 - AluJb SINE Alu -45 267 1 22 0 0 0 chr12 24605423 24605445 -119677044 + AT_rich Low_complexity Low_complexity 1 22 0 718 268 62 68 chr12 24606075 24606444 -119676045 + L1ME LINE L1 5398 5764 -357 26 30 0 0 chr12 24606575 24606608 -119675881 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr12 24607196 24607228 -119675261 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr12 24607520 24607543 -119674946 + (A)n Simple_repeat Simple_repeat 1 23 0 319 307 0 0 chr12 24608086 24608174 -119674315 + MIR SINE MIR 175 262 0 1887 115 31 0 chr12 24608196 24608457 -119674032 - AluSq SINE Alu -44 269 1 444 257 62 110 chr12 24608503 24608708 -119673781 + L2 LINE L2 3036 3224 -89 360 0 0 0 chr12 24608708 24608748 -119673741 + (TG)n Simple_repeat Simple_repeat 1 40 0 444 257 62 110 chr12 24608748 24608834 -119673655 + L2 LINE L2 3224 3313 0 372 299 41 117 chr12 24610572 24611034 -119671455 - L2 LINE L2 0 3272 2846 2222 110 0 10 chr12 24611117 24611425 -119671064 - AluSx SINE Alu -7 305 1 1791 139 82 4 chr12 24611875 24612156 -119670333 - AluSx SINE Alu -9 303 1 2390 101 0 0 chr12 24615036 24615342 -119667147 - AluSq SINE Alu -7 306 1 23 0 0 0 chr12 24615344 24615367 -119667122 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 24615416 24615437 -119667052 + AT_rich Low_complexity Low_complexity 1 21 0 217 211 14 56 chr12 24616555 24616626 -119665863 + A-rich Low_complexity Low_complexity 5 72 0 624 228 48 24 chr12 24617367 24617534 -119664955 + MIR SINE MIR 90 260 -2 1794 169 33 28 chr12 24617799 24618161 -119664328 - MER47A DNA MER2_type 0 366 3 180 0 0 0 chr12 24618189 24618209 -119664280 + (TA)n Simple_repeat Simple_repeat 2 21 0 389 234 138 7 chr12 24618572 24618717 -119663772 - MER106B DNA MER1_type 0 1059 896 214 250 18 0 chr12 24620088 24620144 -119662345 + GA-rich Low_complexity Low_complexity 3 59 0 2193 123 0 3 chr12 24620928 24621238 -119661251 - AluSg SINE Alu -1 309 1 2140 92 7 3 chr12 24621364 24621648 -119660841 + AluSc SINE Alu 1 285 -24 243 0 0 0 chr12 24621755 24621782 -119660707 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 553 259 168 18 chr12 24622229 24622449 -119660040 - MIR SINE MIR -3 259 7 243 161 0 0 chr12 24622673 24622729 -119659760 + GA-rich Low_complexity Low_complexity 2 57 0 512 344 40 32 chr12 24623078 24623331 -119659158 + L3 LINE CR1 1319 1573 -4 475 208 0 20 chr12 24623845 24623946 -119658543 + MIR SINE MIR 164 262 0 435 328 65 11 chr12 24624039 24624225 -119658264 + L3 LINE CR1 1380 1575 -2 552 284 62 58 chr12 24624339 24624582 -119657907 + MIR SINE MIR 18 261 -1 2006 130 3 13 chr12 24626412 24626712 -119655777 + AluSx SINE Alu 1 297 -15 2463 70 0 3 chr12 24626718 24627030 -119655459 + AluY SINE Alu 1 311 0 183 282 17 144 chr12 24628391 24628572 -119653917 + L3 LINE CR1 1339 1496 -81 1580 212 17 7 chr12 24628737 24629034 -119653455 + AluJb SINE Alu 1 300 -12 307 325 135 55 chr12 24629085 24629385 -119653104 - L1ME4a LINE L1 -3 6118 5844 1233 174 150 12 chr12 24629385 24629507 -119652982 - AluJb SINE Alu -14 288 184 459 0 0 0 chr12 24629507 24629558 -119652931 + (TG)n Simple_repeat Simple_repeat 2 52 0 1233 174 150 12 chr12 24629558 24629688 -119652801 - AluJb SINE Alu -118 184 1 307 325 135 55 chr12 24629688 24630097 -119652392 - L1ME4a LINE L1 -277 5844 5352 270 171 86 0 chr12 24630167 24630237 -119652252 + MER116 DNA Mariner 5 80 0 816 161 0 0 chr12 24630584 24630727 -119651762 + FRAM SINE Alu 33 175 -1 264 212 30 0 chr12 24632072 24632138 -119650351 + U3 snRNA snRNA 1 68 -149 1247 186 59 46 chr12 24633152 24633458 -119649031 - AluJo SINE Alu -2 310 1 2257 103 3 0 chr12 24633540 24633831 -119648658 - AluSg1 SINE Alu -17 292 1 723 309 44 25 chr12 24634355 24634763 -119647726 - L1ME LINE L1 -366 5796 5381 2652 288 126 41 chr12 24634993 24635441 -119647048 - L1ME LINE L1 -1025 5121 4713 255 31 0 0 chr12 24635441 24635473 -119647016 + (CA)n Simple_repeat Simple_repeat 1 32 0 2652 288 126 41 chr12 24635473 24636424 -119646065 - L1ME LINE L1 -1433 4713 3844 1842 114 0 82 chr12 24636424 24636740 -119645749 + AluSx SINE Alu 1 290 -22 2652 288 126 41 chr12 24636740 24637959 -119644530 - L1ME LINE L1 -2302 3844 2279 319 344 24 0 chr12 24637970 24638095 -119644394 - MIR SINE MIR -126 136 9 25 31 0 0 chr12 24638656 24638688 -119643801 + AT_rich Low_complexity Low_complexity 1 32 0 363 309 15 100 chr12 24638702 24638961 -119643528 - L1ME4a LINE L1 -73 6048 5812 274 307 20 10 chr12 24639007 24639108 -119643381 - L1ME4a LINE L1 -309 5812 5711 270 209 70 23 chr12 24639119 24639205 -119643284 + MLT1J LTR MaLR 420 509 -2 273 310 20 0 chr12 24639239 24639339 -119643150 - L1ME4a LINE L1 -518 5603 5502 26 30 0 0 chr12 24640574 24640607 -119641882 + AT_rich Low_complexity Low_complexity 1 33 0 499 181 12 0 chr12 24640922 24641082 -119641407 + (TA)n Simple_repeat Simple_repeat 1 162 0 1541 230 7 0 chr12 24641906 24642206 -119640283 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr12 24642522 24642543 -119639946 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr12 24644708 24644733 -119637756 + (A)n Simple_repeat Simple_repeat 1 25 0 1211 7 0 0 chr12 24645698 24645876 -119636613 + L1PA4 LINE L1 6008 6185 0 401 244 161 39 chr12 24646111 24646316 -119636173 - MIR SINE MIR -30 232 3 241 276 0 17 chr12 24646893 24646951 -119635538 - MER91 DNA MER1_type 0 196 140 222 37 0 0 chr12 24647907 24647934 -119634555 + (TG)n Simple_repeat Simple_repeat 2 28 0 503 236 204 44 chr12 24648106 24648317 -119634172 + LTR33A LTR ERVL 226 484 -39 2044 118 0 35 chr12 24648317 24648630 -119633859 + AluSq SINE Alu 1 302 -11 503 236 204 44 chr12 24648630 24648668 -119633821 + LTR33A LTR ERVL 484 515 -8 24 0 0 0 chr12 24648681 24648705 -119633784 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 24649355 24649378 -119633111 + AT_rich Low_complexity Low_complexity 1 23 0 410 304 165 41 chr12 24649420 24650003 -119632486 + L3 LINE CR1 670 1324 -253 946 195 0 0 chr12 24650022 24650176 -119632313 - FRAM SINE Alu -22 154 1 272 270 40 0 chr12 24650180 24650254 -119632235 + L3 LINE CR1 1341 1417 -160 251 182 36 0 chr12 24650581 24650636 -119631853 + MLT1E2 LTR MaLR 95 151 -503 1609 268 21 8 chr12 24650709 24651090 -119631399 + MLT1E2 LTR MaLR 219 604 -22 2088 143 0 0 chr12 24651288 24651582 -119630907 + AluSx SINE Alu 2 295 -17 5048 71 9 4 chr12 24651717 24652395 -119630094 - L1PA7 LINE L1 -1 6153 5473 1503 180 17 20 chr12 24652423 24652718 -119629771 + AluJb SINE Alu 5 298 -14 298 169 0 14 chr12 24653149 24653220 -119629269 - L1MA7 LINE L1 -2 6289 6220 327 104 0 0 chr12 24654083 24654131 -119628358 + (CA)n Simple_repeat Simple_repeat 1 48 0 384 258 7 84 chr12 24654434 24654553 -119627936 + MER96 DNA MER1_type? 1 107 -68 2341 66 7 7 chr12 24654553 24654854 -119627635 - AluY SINE Alu -9 302 2 384 258 7 84 chr12 24654854 24654889 -119627600 + MER96 DNA MER1_type? 107 143 -32 2142 107 10 7 chr12 24655092 24655392 -119627097 + AluSq SINE Alu 1 301 -12 267 368 76 14 chr12 24655917 24656061 -119626428 + MIR3 SINE MIR 43 195 -13 250 286 18 62 chr12 24656214 24656326 -119626163 - MIR SINE MIR -1 261 155 1826 132 30 27 chr12 24656336 24656631 -119625858 - AluJb SINE Alu 0 312 17 506 149 23 0 chr12 24656872 24656959 -119625530 - MIR SINE MIR -102 160 72 209 274 0 16 chr12 24657232 24657294 -119625195 - MIR SINE MIR -132 76 16 480 249 225 0 chr12 24657328 24657497 -119624992 + MIR SINE MIR 56 262 0 196 335 63 0 chr12 24657742 24657830 -119624659 + MIR SINE MIR 37 130 -78 249 248 34 151 chr12 24659259 24659497 -119622992 + MLT1K LTR MaLR 379 588 0 1184 161 38 0 chr12 24662254 24662465 -119620024 - MER20 DNA MER1_type 0 219 1 225 0 0 0 chr12 24662948 24662973 -119619516 + (A)n Simple_repeat Simple_repeat 1 25 0 3298 184 40 7 chr12 24663672 24664344 -119618145 + MER50 LTR ERV1 29 722 -12 255 269 30 0 chr12 24664381 24664448 -119618041 + L2 LINE L2 3186 3254 -18 1574 199 78 49 chr12 24666803 24667229 -119615260 + MER39 LTR ERV1 270 707 0 182 328 17 17 chr12 24667898 24667956 -119614533 + L3b LINE CR1 1296 1353 -230 300 345 9 9 chr12 24668025 24668135 -119614354 + L2 LINE L2 2715 2824 -490 561 232 44 61 chr12 24668213 24668394 -119614095 + L2 LINE L2 3136 3313 0 223 357 104 13 chr12 24668875 24669029 -119613460 + L2 LINE L2 2908 3075 -197 1702 172 7 10 chr12 24669032 24669322 -119613167 + AluJo SINE Alu 13 301 -11 1187 258 53 45 chr12 24669537 24669986 -119612503 + L2 LINE L2 2258 2710 -604 1039 17 0 0 chr12 24669988 24670105 -119612384 - L1PA4 LINE L1 -262 5893 5777 1598 55 0 0 chr12 24670105 24670301 -119612188 + L1PA4 LINE L1 5955 6153 -2 764 224 17 6 chr12 24670359 24670538 -119611951 + L2 LINE L2 2728 2908 -406 322 333 0 10 chr12 24670584 24670683 -119611806 + L2 LINE L2 3205 3302 -11 233 384 58 0 chr12 24670706 24670792 -119611697 + L2 LINE L2 3182 3272 0 21 36 0 0 chr12 24671424 24671452 -119611037 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 24672332 24672352 -119610137 + (GGAA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr12 24672493 24672521 -119609968 + AT_rich Low_complexity Low_complexity 1 28 0 2028 113 20 3 chr12 24673702 24674004 -119608485 + AluSx SINE Alu 1 307 -5 815 275 133 17 chr12 24674008 24674368 -119608121 + MLT1J LTR MaLR 107 508 -3 467 226 186 0 chr12 24674408 24674532 -119607957 + MIR SINE MIR 116 262 0 500 374 59 7 chr12 24675190 24675476 -119607013 + L2 LINE L2 2440 2740 -574 254 322 41 112 chr12 24675620 24675862 -119606627 + L2 LINE L2 3001 3225 -47 2411 63 0 0 chr12 24676356 24676670 -119605819 + AluY SINE Alu 3 316 0 601 261 59 0 chr12 24678803 24678956 -119603533 + MER5A DNA MER1_type 7 168 -21 240 111 0 0 chr12 24679067 24679103 -119603386 + (TA)n Simple_repeat Simple_repeat 1 36 0 803 282 24 8 chr12 24680380 24680632 -119601857 + MIR SINE MIR 5 260 -2 211 259 0 52 chr12 24680826 24680884 -119601605 + MIR SINE MIR 57 111 -151 23 54 0 0 chr12 24680897 24680934 -119601555 + AT_rich Low_complexity Low_complexity 1 37 0 207 327 33 65 chr12 24681354 24681507 -119600982 + L3b LINE CR1 1269 1416 -167 269 306 81 46 chr12 24681757 24681930 -119600559 + MIR SINE MIR 58 236 -26 199 167 71 0 chr12 24682276 24682318 -119600171 + L2 LINE L2 3263 3307 -6 609 248 29 152 chr12 24682336 24682816 -119599673 + L2 LINE L2 2893 3313 0 2054 134 3 25 chr12 24683170 24683350 -119599139 - AluSq SINE Alu 0 313 142 1913 85 0 33 chr12 24683350 24683620 -119598869 - AluY SINE Alu -11 300 40 2054 134 3 25 chr12 24683620 24683759 -119598730 - AluSq SINE Alu -171 142 1 1782 145 70 25 chr12 24684961 24685320 -119597169 - THE1C LTR MaLR 0 375 1 2253 113 0 0 chr12 24685508 24685808 -119596681 + AluSx SINE Alu 1 300 -12 319 267 92 33 chr12 24686379 24686499 -119595990 + L2 LINE L2 3186 3312 -1 431 283 105 77 chr12 24686541 24686894 -119595595 + HAL1 LINE L1 25 387 -2120 254 355 54 16 chr12 24687005 24687191 -119595298 + HAL1 LINE L1 705 897 -1610 2225 104 7 13 chr12 24687335 24687643 -119594846 + AluSc SINE Alu 1 306 -3 856 278 50 43 chr12 24687899 24688316 -119594173 + HAL1 LINE L1 1364 1783 -724 217 44 0 67 chr12 24688318 24688363 -119594126 + (TAAAAA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr12 24689267 24689288 -119593201 + AT_rich Low_complexity Low_complexity 1 21 0 342 293 29 73 chr12 24689291 24689564 -119592925 + L1ME4a LINE L1 3887 4147 -1999 287 263 72 20 chr12 24690148 24690300 -119592189 + L1ME4a LINE L1 5317 5476 -2332 444 281 101 46 chr12 24690360 24690688 -119591801 + L1ME4a LINE L1 5588 5933 -188 584 230 161 22 chr12 24691152 24691382 -119591107 - MIR SINE MIR 0 262 1 2170 97 4 0 chr12 24691842 24692160 -119590329 - AluY SINE Alu 0 319 1 2182 114 3 19 chr12 24693102 24693409 -119589080 - AluSx SINE Alu -10 302 1 25 51 0 0 chr12 24693760 24693799 -119588690 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr12 24693950 24693973 -119588516 + AT_rich Low_complexity Low_complexity 1 23 0 2434 121 3 22 chr12 24694359 24694730 -119587759 + THE1B LTR MaLR 1 364 0 443 241 57 35 chr12 24694746 24694887 -119587602 - L2 LINE L2 -2 3311 3168 210 91 0 0 chr12 24694897 24694930 -119587559 + (TC)n Simple_repeat Simple_repeat 2 34 0 360 0 0 0 chr12 24694932 24694972 -119587517 + (CA)n Simple_repeat Simple_repeat 1 40 0 377 347 163 29 chr12 24695128 24695503 -119586986 - L2 LINE L2 -340 2974 2550 354 289 108 31 chr12 24695529 24695954 -119586535 + LTR16A LTR ERVL 1 450 0 1806 161 11 3 chr12 24696962 24697247 -119585242 + AluJb SINE Alu 1 287 -25 466 279 80 80 chr12 24697343 24697720 -119584769 + LTR33A LTR ERVL 8 384 -139 557 329 108 38 chr12 24698008 24698562 -119583927 + L2 LINE L2 2135 2727 -587 273 194 37 19 chr12 24699194 24699302 -119583187 + (TA)n Simple_repeat Simple_repeat 2 111 0 217 311 11 56 chr12 24699396 24699486 -119583003 + L2 LINE L2 3184 3269 -3 2286 110 0 0 chr12 24699770 24700078 -119582411 + AluSc SINE Alu 1 308 -1 2215 114 0 3 chr12 24702222 24702519 -119579970 - AluSg SINE Alu -14 296 1 2082 36 0 0 chr12 24702558 24702805 -119579684 + L1PA5 LINE L1 5904 6150 -4 957 198 116 35 chr12 24702836 24703154 -119579335 - MER2 DNA MER2_type 0 345 2 881 130 31 6 chr12 24703158 24703319 -119579170 - L1MA8 LINE L1 -71 6220 6056 189 0 0 0 chr12 24703817 24703838 -119578651 + (A)n Simple_repeat Simple_repeat 1 21 0 2066 120 0 3 chr12 24704132 24704451 -119578038 - AluSx SINE Alu 0 318 1 2675 92 17 0 chr12 24704466 24704824 -119577665 + THE1B LTR MaLR 1 364 0 3489 181 7 14 chr12 24705039 24705728 -119576761 - L1MB2 LINE L1 -10 6161 5478 231 200 0 0 chr12 24706088 24706143 -119576346 - Alu SINE Alu -1 301 247 1661 157 26 0 chr12 24706144 24706411 -119576078 - AluJb SINE Alu -38 274 1 1694 173 0 37 chr12 24706538 24706856 -119575633 + AluSx SINE Alu 1 307 0 24 32 0 0 chr12 24706987 24707018 -119575471 + AT_rich Low_complexity Low_complexity 1 31 0 240 243 108 14 chr12 24707065 24707139 -119575350 + L2 LINE L2 3184 3264 -8 237 163 23 0 chr12 24708494 24708537 -119573952 - MER115 DNA AcHobo -9 684 641 599 310 20 40 chr12 24708556 24708756 -119573733 - MER115 DNA AcHobo -358 335 140 2296 81 0 10 chr12 24709410 24709706 -119572783 - AluSg SINE Alu -17 293 1 331 315 133 47 chr12 24709712 24710448 -119572041 - L2 LINE L2 -2 3311 2510 187 150 25 50 chr12 24710974 24711014 -119571475 + MER5A DNA MER1_type 14 52 -137 1084 60 0 0 chr12 24711062 24711195 -119571294 - AluY SINE Alu 0 311 179 193 345 42 8 chr12 24711218 24711337 -119571152 - MER5B DNA MER1_type -55 123 1 234 250 0 0 chr12 24712183 24712231 -119570258 + CT-rich Low_complexity Low_complexity 2 49 0 192 385 53 27 chr12 24713073 24713260 -119569229 - L2 LINE L2 -3 3269 3078 1642 171 10 10 chr12 24713328 24713638 -119568851 + AluSx SINE Alu 1 310 -2 2041 0 0 9 chr12 24713676 24713904 -119568585 - AluYa5 SINE Alu -85 226 1 1554 232 68 24 chr12 24713904 24714313 -119568176 + LTR40a LTR ERVL 93 519 0 665 322 24 5 chr12 24714518 24714729 -119567760 - MIR SINE MIR 0 262 48 268 329 70 80 chr12 24714804 24715090 -119567399 - L2 LINE L2 -69 3203 2921 23 0 0 0 chr12 24715246 24715269 -119567220 + AT_rich Low_complexity Low_complexity 1 23 0 250 232 0 0 chr12 24716145 24716201 -119566288 - L2 LINE L2 -4 3268 3213 266 257 54 0 chr12 24716656 24716730 -119565759 - MER69 DNA AcHobo -1 2525 2448 555 182 125 26 chr12 24716768 24716960 -119565529 - MER69 DNA AcHobo -317 2209 1999 * 760 236 143 117 chr12 24716946 24717500 -119564989 - MER69 DNA AcHobo -1958 568 1 377 281 13 7 chr12 24719208 24719361 -119563128 + (TA)n Simple_repeat Simple_repeat 2 155 0 1798 157 17 17 chr12 24719734 24720033 -119562456 - AluSx SINE Alu -13 299 1 306 67 0 0 chr12 24721091 24721136 -119561353 + (CA)n Simple_repeat Simple_repeat 2 46 0 1826 147 24 10 chr12 24722245 24722537 -119559952 - AluJb SINE Alu -16 296 1 267 299 299 6 chr12 24722781 24722948 -119559541 - MIR SINE MIR -17 245 30 23 0 0 0 chr12 24726122 24726145 -119556344 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 24727369 24727397 -119555092 + AT_rich Low_complexity Low_complexity 1 28 0 455 274 0 0 chr12 24727879 24727992 -119554497 - MLT1E LTR MaLR -456 137 25 203 307 67 53 chr12 24728836 24729061 -119553428 + L2 LINE L2 2302 2529 -785 2112 114 3 0 chr12 24729777 24730067 -119552422 - AluSx SINE Alu -21 291 1 608 177 31 31 chr12 24731163 24731293 -119551196 + AluJo SINE Alu 42 171 -141 298 328 45 22 chr12 24731329 24731463 -119551026 - MIR SINE MIR -42 220 84 181 229 0 0 chr12 24731574 24731609 -119550880 + L2 LINE L2 3171 3205 -67 612 0 0 0 chr12 24731616 24731684 -119550805 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 189 74 0 0 chr12 24731688 24731715 -119550774 + (CCCA)n Simple_repeat Simple_repeat 1 27 0 742 125 8 0 chr12 24731722 24731842 -119550647 + MER50 LTR ERV1 485 605 -129 267 122 0 0 chr12 24731928 24731977 -119550512 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 234 250 0 0 chr12 24732370 24732418 -119550071 + CT-rich Low_complexity Low_complexity 2 49 0 196 316 75 48 chr12 24733259 24733446 -119549043 - L2 LINE L2 -3 3269 3078 2061 116 10 10 chr12 24733514 24733824 -119548665 + AluSx SINE Alu 1 310 -2 453 298 81 19 chr12 24733891 24734052 -119548437 + L2 LINE L2 3143 3313 0 1177 75 0 0 chr12 24734438 24734584 -119547905 + AluY SINE Alu 152 297 -14 315 290 55 41 chr12 24734805 24734950 -119547539 - MIR SINE MIR 0 262 116 207 308 0 26 chr12 24735942 24736020 -119546469 + GA-rich Low_complexity Low_complexity 2 77 0 867 232 27 13 chr12 24737277 24737501 -119544988 + MIR SINE MIR 24 250 -12 261 83 0 0 chr12 24737567 24737603 -119544886 + (TG)n Simple_repeat Simple_repeat 1 36 0 30 59 0 0 chr12 24738984 24739035 -119543454 + AT_rich Low_complexity Low_complexity 1 51 0 369 0 0 0 chr12 24740464 24740505 -119541984 + (TA)n Simple_repeat Simple_repeat 1 41 0 245 307 108 28 chr12 24742347 24742523 -119539966 + MLT1K LTR MaLR 259 448 -140 209 265 29 15 chr12 24742853 24742921 -119539568 + GA-rich Low_complexity Low_complexity 1 69 0 311 325 32 32 chr12 24744521 24744647 -119537842 + L2 LINE L2 3144 3269 -3 439 340 108 10 chr12 24744876 24745079 -119537410 + MIR SINE MIR 13 235 -27 1446 215 47 85 chr12 24745196 24745690 -119536799 + MER77 LTR ERV1 123 597 -8 2312 79 0 10 chr12 24746152 24746455 -119536034 + AluY SINE Alu 1 300 -11 230 305 0 0 chr12 24746677 24746736 -119535753 - L2 LINE L2 -999 2315 2257 672 162 17 0 chr12 24746849 24746966 -119535523 - BC200 scRNA scRNA -81 119 1 1507 193 30 3 chr12 24747146 24747441 -119535048 + Tigger7 DNA MER2_type 6 308 -425 1983 128 6 64 chr12 24747443 24747581 -119534908 - MER1B DNA MER1_type -2373 339 195 2338 131 27 5 chr12 24747581 24747948 -119534541 + THE1C LTR MaLR 1 375 0 1983 128 6 64 chr12 24747948 24748169 -119534320 - MER1B DNA MER1_type -2517 195 1 2309 166 24 15 chr12 24748169 24748633 -119533856 + Tigger7 DNA MER2_type 303 770 -1717 668 175 0 0 chr12 24748633 24748753 -119533736 + Tigger7 DNA MER2_type 2118 2237 -250 1829 152 38 3 chr12 24749194 24749483 -119533006 + AluJo SINE Alu 5 303 -9 225 186 17 34 chr12 24750416 24750475 -119532014 + (TATG)n Simple_repeat Simple_repeat 2 59 0 2422 50 0 60 chr12 24750579 24750896 -119531593 - AluY SINE Alu -13 298 1 667 235 96 3 chr12 24750905 24751084 -119531405 - MIR SINE MIR -10 252 62 1701 111 9 0 chr12 24751196 24751472 -119531017 - L1P5 LINE L1 -596 5560 5281 447 354 180 5 chr12 24751615 24751982 -119530507 - L3 LINE CR1 -899 678 248 957 290 137 32 chr12 24752172 24752982 -119529507 + L2 LINE L2 2405 3313 0 255 204 37 0 chr12 24757450 24757504 -119524985 + CT-rich Low_complexity Low_complexity 2 57 0 878 211 0 29 chr12 24757634 24757858 -119524631 + FRAM SINE Alu 1 83 0 224 281 0 18 chr12 24757913 24757970 -119524519 + CT-rich Low_complexity Low_complexity 1 56 0 223 314 76 34 chr12 24758399 24758517 -119523972 + MIR SINE MIR 14 136 -126 * 285 314 89 40 chr12 24758505 24758629 -119523860 + L2 LINE L2 3143 3272 0 290 189 207 18 chr12 24758630 24758741 -119523748 + MIR SINE MIR 130 261 -1 571 327 70 0 chr12 24758786 24758985 -119523504 + MIR SINE MIR 33 245 -17 1124 143 30 0 chr12 24759173 24759341 -119523148 + AluJb SINE Alu 129 301 -11 21 0 0 0 chr12 24759361 24759382 -119523107 + AT_rich Low_complexity Low_complexity 1 21 0 947 227 14 5 chr12 24759412 24759619 -119522870 + MER6B DNA MER2_type 1 209 -1 209 108 27 0 chr12 24759681 24759718 -119522771 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1348 89 139 0 chr12 24760667 24760869 -119521620 - MER30 DNA MER1_type 0 230 1 507 281 56 0 chr12 24761653 24761831 -119520658 + LTR33 LTR ERVL 27 214 -307 236 291 0 97 chr12 24761893 24761996 -119520493 + LTR33 LTR ERVL 330 422 -99 1654 173 22 28 chr12 24761996 24762360 -119520129 - L1MB8 LINE L1 -6 6172 5811 3798 20 0 2 chr12 24762360 24762794 -119519695 - L1PA3 LINE L1 -3 6152 5713 934 73 102 0 chr12 24762815 24762952 -119519537 - L1PA11 LINE L1 -3 6171 6021 1980 151 34 8 chr12 24762954 24763339 -119519150 - L1MB8 LINE L1 -359 5825 5431 253 262 39 19 chr12 24763340 24763443 -119519046 + LTR33 LTR ERVL 409 513 -8 476 319 134 23 chr12 24763464 24763771 -119518718 - L3 LINE CR1 -321 1256 916 3258 120 39 32 chr12 24763835 24764394 -119518095 - L1PB4 LINE L1 -8 6148 5586 507 216 8 8 chr12 24764495 24764620 -119517869 - AluSc SINE Alu -184 125 1 1989 220 102 74 chr12 24764621 24764691 -119517798 - MER69B DNA AcHobo -1608 918 851 1514 188 14 14 chr12 24764691 24764973 -119517516 + AluJb SINE Alu 1 282 -30 1989 220 102 74 chr12 24764973 24765769 -119516720 - MER69B DNA AcHobo -1675 851 28 1019 197 131 60 chr12 24767362 24767541 -119514948 + MER58D DNA MER1_type 6 171 -2249 2238 113 0 0 chr12 24767541 24767841 -119514648 + AluSg SINE Alu 1 300 -10 1019 197 131 60 chr12 24767841 24767897 -119514592 + MER58D DNA MER1_type 171 222 -2198 1842 174 7 0 chr12 24767897 24768207 -119514282 + AluJo SINE Alu 1 312 0 1019 197 131 60 chr12 24768207 24768321 -119514168 + MER58D DNA MER1_type 222 381 -5 404 336 98 15 chr12 24768567 24768832 -119513657 + L1ME LINE L1 5436 5722 -399 382 205 12 0 chr12 24769024 24769107 -119513382 - MER69 DNA AcHobo -8 2518 2435 * 435 325 37 29 chr12 24769102 24769345 -119513144 - MER69 DNA AcHobo -2279 247 3 300 252 165 9 chr12 24769795 24769910 -119512579 + L2 LINE L2 3180 3312 -1 1843 163 125 24 chr12 24771229 24771653 -119510836 + MLT1C LTR MaLR 1 467 0 688 311 85 11 chr12 24774399 24774669 -119507820 - L2 LINE L2 -188 3125 2836 5779 208 84 58 chr12 24774783 24775265 -119507224 - L1MD1 LINE L1 -6 6236 5768 4952 75 1 18 chr12 24775265 24775936 -119506553 + L1PA8A LINE L1 5462 6121 -10 5779 208 84 58 chr12 24775936 24776472 -119506017 - L1MD1 LINE L1 -474 5768 5247 1951 163 0 0 chr12 24776472 24776767 -119505722 - AluJb SINE Alu -17 295 1 5779 208 84 58 chr12 24776767 24779245 -119503244 - L1MD1 LINE L1 -995 5247 2641 2200 50 90 4 chr12 24779245 24779524 -119502965 - AluY SINE Alu -8 303 1 5779 208 84 58 chr12 24779524 24779597 -119502892 - L1MD1 LINE L1 -3601 2641 2571 275 296 0 11 chr12 24783433 24783521 -119498968 + MIR SINE MIR 176 262 0 328 106 0 0 chr12 24784410 24784457 -119498032 + MLT1L LTR MaLR 148 194 -421 1714 145 3 61 chr12 24785230 24785541 -119496948 - AluSx SINE Alu -19 293 1 2076 220 76 53 chr12 24786301 24787159 -119495330 + L1MC5 LINE L1 6708 7531 -430 239 274 60 36 chr12 24787274 24787442 -119495047 + L1ME3A LINE L1 5999 6170 0 254 264 70 10 chr12 24788401 24788551 -119493938 + MLT1I LTR MaLR 67 221 -188 1902 179 7 0 chr12 24788832 24789140 -119493349 + AluJo SINE Alu 3 312 0 825 179 0 7 chr12 24792159 24792331 -119490158 + AluSg/x SINE Alu 139 309 0 1787 51 34 17 chr12 24792331 24792565 -119489924 + L1PA6 LINE L1 5904 6141 -13 191 296 0 0 chr12 24793379 24793433 -119489056 + MIR SINE MIR 203 256 -6 851 256 36 11 chr12 24794501 24794775 -119487714 + L1MC3 LINE L1 7494 7774 -11 294 379 121 7 chr12 24794815 24794947 -119487542 + L3 LINE CR1 992 1108 -469 1808 123 84 21 chr12 24794947 24795231 -119487258 + AluSx SINE Alu 1 302 -10 294 379 121 7 chr12 24795231 24795370 -119487119 + L3 LINE CR1 1108 1294 -283 1134 298 187 6 chr12 24795817 24796706 -119485783 + L2 LINE L2 2230 3309 -4 309 185 82 96 chr12 24797222 24797368 -119485121 - MER103 DNA DNA -20 146 3 5145 119 39 17 chr12 24797384 24797509 -119484980 - L1MA3 LINE L1 0 6305 6184 392 0 0 20 chr12 24797509 24797558 -119484931 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 2005 125 14 4 chr12 24797558 24797837 -119484652 - AluSx SINE Alu -30 282 1 5145 119 39 17 chr12 24797837 24798615 -119483874 - L1MA3 LINE L1 -120 6185 5381 441 317 16 48 chr12 24798686 24798872 -119483617 + MIR SINE MIR 13 192 -70 202 284 102 11 chr12 24799493 24799581 -119482908 + L3 LINE CR1 1475 1570 -7 22 0 0 0 chr12 24800086 24800108 -119482381 + AT_rich Low_complexity Low_complexity 1 22 0 417 286 36 41 chr12 24802870 24803066 -119479423 + LTR16A LTR ERVL 144 338 -112 283 335 55 37 chr12 24803177 24803341 -119479148 - MIR3 SINE MIR -26 182 16 295 333 44 0 chr12 24803568 24803682 -119478807 - MIR SINE MIR -42 220 102 419 170 21 0 chr12 24805028 24805122 -119477367 - MER53 DNA DNA 0 189 94 278 230 264 0 chr12 24805126 24805213 -119477276 - MER5A DNA MER1_type -21 168 59 614 233 28 40 chr12 24805488 24805664 -119476825 + MER5B DNA MER1_type 1 174 -4 614 245 148 0 chr12 24805683 24805838 -119476651 + MER5A DNA MER1_type 11 188 -1 27 0 0 26 chr12 24808583 24808603 -119473886 + AT_rich Low_complexity Low_complexity 1 21 -16 681 164 112 0 chr12 24808603 24808719 -119473770 + FLAM_A SINE Alu 5 133 0 27 0 0 26 chr12 24808719 24808736 -119473753 + AT_rich Low_complexity Low_complexity 21 37 0 298 245 41 0 chr12 24808852 24808954 -119473535 + MIR SINE MIR 34 120 -142 2217 82 0 0 chr12 24809012 24809342 -119473147 + AluY SINE Alu 1 330 0 390 42 0 0 chr12 24809580 24809628 -119472861 + (CA)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr12 24810424 24810448 -119472041 + AT_rich Low_complexity Low_complexity 1 24 0 264 343 0 9 chr12 24810829 24810937 -119471552 + MIR3 SINE MIR 97 203 -5 347 333 0 1 chr12 24811113 24811226 -119471263 - MIR SINE MIR -70 138 38 1177 210 10 23 chr12 24811362 24811667 -119470822 - L1MA10 LINE L1 -11 6323 6023 567 292 59 14 chr12 24812149 24812368 -119470121 + MIR SINE MIR 23 251 -11 2189 99 11 0 chr12 24812509 24812792 -119469697 + AluSc SINE Alu 1 286 -23 21 0 0 0 chr12 24813061 24813082 -119469407 + AT_rich Low_complexity Low_complexity 1 21 0 332 348 85 26 chr12 24813845 24814222 -119468267 - L2 LINE L2 -1110 2204 1806 2586 123 44 7 chr12 24814484 24814897 -119467592 + MSTA LTR MaLR 1 428 0 425 298 153 43 chr12 24815044 24815417 -119467072 + MLT1K LTR MaLR 175 588 0 219 180 0 100 chr12 24815522 24815572 -119466917 + L2 LINE L2 3254 3298 -15 14300 128 12 26 chr12 24815685 24817182 -119465307 + Tigger1 DNA MER2_type 6 1456 -962 7109 49 9 0 chr12 24817182 24818416 -119464073 + L1PA7 LINE L1 4876 6152 -2 14300 128 12 26 chr12 24818416 24819366 -119463123 + Tigger1 DNA MER2_type 1456 2418 0 2142 116 0 3 chr12 24819591 24819894 -119462595 + AluY SINE Alu 3 304 -7 226 315 0 0 chr12 24819938 24819992 -119462497 + L2 LINE L2 3218 3271 -1 414 0 0 0 chr12 24820571 24820617 -119461872 + (TG)n Simple_repeat Simple_repeat 1 46 0 993 276 63 72 chr12 24822265 24822843 -119459646 - L2 LINE L2 0 3313 2736 2145 115 7 7 chr12 24822925 24823229 -119459260 - AluSx SINE Alu -8 304 1 306 0 0 0 chr12 24824247 24824281 -119458208 + (TG)n Simple_repeat Simple_repeat 1 34 0 190 200 0 25 chr12 24824299 24824339 -119458150 - MIR SINE MIR -112 150 112 1050 280 55 15 chr12 24824548 24824948 -119457541 + LTR16A LTR ERVL 28 443 -7 196 352 70 28 chr12 24825353 24825495 -119456994 + L3 LINE CR1 190 337 -1240 249 396 63 19 chr12 24825562 24825721 -119456768 + L3 LINE CR1 467 632 -945 1033 308 100 45 chr12 24826037 24826695 -119455794 - L2 LINE L2 -7 3306 2592 2102 196 68 10 chr12 24826844 24827345 -119455144 + L1MC3 LINE L1 6865 7394 -391 1342 187 0 90 chr12 25027475 25027616 -119254873 - AluSx SINE Alu -38 274 173 2394 92 0 0 chr12 25027616 25027922 -119254567 - AluSg SINE Alu -4 306 1 1342 187 0 90 chr12 25027922 25028079 -119254410 - AluSx SINE Alu -139 173 3 534 296 91 0 chr12 25028086 25028262 -119254227 - MIR SINE MIR -66 196 5 468 164 242 55 chr12 25028317 25028445 -119254044 + MSTA LTR MaLR 1 152 -223 621 141 41 16 chr12 25028447 25028568 -119253921 - LTR9 LTR ERV1 -2 610 487 9911 96 56 11 chr12 25028670 25031339 -119251150 - L1PBa LINE L1 -3938 2925 1 2356 109 0 0 chr12 25031632 25031936 -119250553 + AluSx SINE Alu 1 304 -8 1439 192 0 4 chr12 25032036 25032302 -119250187 + AluJo SINE Alu 44 308 -4 278 261 106 0 chr12 25033345 25033506 -119248983 + L1MC4a LINE L1 5198 5375 -771 323 354 148 15 chr12 25033570 25033895 -119248594 + L1MC4a LINE L1 5508 5875 -1933 428 331 176 25 chr12 25034235 25034480 -119248009 + L2 LINE L2 2990 3271 -1 2253 71 0 0 chr12 25035696 25036033 -119246456 - AluY SINE Alu 0 337 1 2298 113 3 0 chr12 25036227 25036538 -119245951 + AluSp SINE Alu 1 312 -1 180 271 180 49 chr12 25036569 25036691 -119245798 - L2 LINE L2 -223 3049 2912 372 294 65 24 chr12 25036863 25037033 -119245456 - L2 LINE L2 -2 3311 3135 785 333 177 13 chr12 25037217 25037766 -119244723 - L2 LINE L2 -417 2897 2259 285 250 0 0 chr12 25037865 25037925 -119244564 - L2 LINE L2 -1072 2242 2183 310 263 80 45 chr12 25038260 25038484 -119244005 - L1M4 LINE L1 -1117 5029 4798 345 307 59 15 chr12 25038755 25038957 -119243532 + L1M4 LINE L1 4569 4779 -1367 24 0 0 0 chr12 25038982 25039006 -119243483 + AT_rich Low_complexity Low_complexity 1 24 0 327 318 139 55 chr12 25039558 25040226 -119242263 + L2 LINE L2 2308 3068 -245 6425 93 13 0 chr12 25040226 25041672 -119240817 + L1PA14 LINE L1 4702 6161 0 327 318 139 55 chr12 25041672 25041941 -119240548 + L2 LINE L2 3068 3313 0 270 0 0 0 chr12 25042226 25042256 -119240233 + (CA)n Simple_repeat Simple_repeat 1 30 0 333 276 20 20 chr12 25042434 25042532 -119239957 - MIR SINE MIR -64 144 47 23 0 0 0 chr12 25042699 25042722 -119239767 + AT_rich Low_complexity Low_complexity 1 23 0 320 260 135 103 chr12 25043118 25043526 -119238963 - L1ME4a LINE L1 -4 6117 5697 1515 181 66 7 chr12 25043817 25044105 -119238384 - AluJo SINE Alu -7 305 1 1037 216 42 0 chr12 25044823 25045036 -119237453 - MER58A DNA MER1_type 0 224 3 677 201 106 56 chr12 25045045 25045224 -119237265 + MER5A DNA MER1_type 1 188 -1 467 248 218 0 chr12 25045271 25045404 -119237085 + MER5A DNA MER1_type 26 187 -2 203 278 30 107 chr12 25045404 25045449 -119237040 - MER5A DNA MER1_type -147 42 11 2589 29 3 13 chr12 25045537 25045848 -119236641 - AluY SINE Alu -3 308 1 347 113 16 0 chr12 25045946 25046008 -119236481 + (TC)n Simple_repeat Simple_repeat 1 63 0 270 303 133 30 chr12 25046581 25046746 -119235743 + MIR SINE MIR 7 188 -74 2014 113 0 30 chr12 25047424 25047724 -119234765 + AluSx SINE Alu 3 293 -19 2070 127 3 0 chr12 25047726 25048025 -119234464 + AluSx SINE Alu 1 300 -12 2204 88 30 13 chr12 25048056 25048361 -119234128 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr12 25048604 25048626 -119233863 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 25048930 25048961 -119233528 + AT_rich Low_complexity Low_complexity 1 31 0 1989 139 3 0 chr12 25049055 25049349 -119233140 + AluJb SINE Alu 1 295 -17 1903 141 32 0 chr12 25049494 25049778 -119232711 + AluSq SINE Alu 1 293 -20 183 382 42 61 chr12 25050208 25050420 -119232069 - L2 LINE L2 -64 3208 3001 1882 190 66 0 chr12 25050423 25050817 -119231672 - L1ME LINE L1 -469 5697 5278 688 213 52 11 chr12 25050833 25051007 -119231482 + L1MB8 LINE L1 5957 6137 -41 2293 83 23 0 chr12 25052050 25052350 -119230139 + AluSx SINE Alu 1 307 -5 926 168 37 14 chr12 25052391 25052605 -119229884 + L1MB8 LINE L1 5954 6172 -6 2186 104 0 0 chr12 25052689 25053022 -119229467 + AluSg SINE Alu 1 333 0 254 296 23 11 chr12 25053048 25053136 -119229353 - MIR3 SINE MIR -12 196 108 931 182 101 0 chr12 25053356 25053565 -119228924 + MER33 DNA MER1_type 1 230 -94 2555 69 0 0 chr12 25053583 25053889 -119228600 + AluY SINE Alu 1 306 -5 27 29 0 0 chr12 25054568 25054602 -119227887 + AT_rich Low_complexity Low_complexity 1 34 0 371 290 73 24 chr12 25054991 25055115 -119227374 + L2 LINE L2 3142 3271 -1 1011 237 92 58 chr12 25055353 25056014 -119226475 - L2 LINE L2 -9 3304 2622 2250 109 3 0 chr12 25056311 25056604 -119225885 + AluSp SINE Alu 1 294 -19 967 152 0 18 chr12 25056738 25056902 -119225587 + FRAM SINE Alu 1 161 -5 506 139 5 233 chr12 25057062 25057264 -119225225 + L2 LINE L2 3158 3313 0 1302 151 43 0 chr12 25058840 25059072 -119223417 - Tigger7 DNA MER2_type 0 2487 2246 21 71 0 0 chr12 25059507 25059549 -119222940 + AT_rich Low_complexity Low_complexity 1 42 0 442 177 34 11 chr12 25059786 25059961 -119222528 + (TA)n Simple_repeat Simple_repeat 2 180 0 248 259 0 0 chr12 25059965 25060019 -119222470 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 181 364 11 23 chr12 25060771 25060859 -119221630 + L2 LINE L2 3227 3313 0 217 333 0 67 chr12 25060866 25060913 -119221576 - MIR3 SINE MIR -43 165 127 2618 46 0 0 chr12 25060913 25061217 -119221272 + AluY SINE Alu 1 304 -7 217 333 0 67 chr12 25061217 25061274 -119221215 - MIR3 SINE MIR -81 127 68 266 122 0 0 chr12 25062597 25062638 -119219851 - L1ME LINE L1 -540 5581 5541 24 53 0 0 chr12 25063123 25063161 -119219328 + AT_rich Low_complexity Low_complexity 1 38 0 399 337 88 6 chr12 25063218 25063399 -119219090 + MIR3 SINE MIR 10 205 -3 992 301 82 39 chr12 25063416 25063831 -119218658 + MLT1J LTR MaLR 1 433 -78 1627 275 126 33 chr12 25065152 25065813 -119216676 + HAL1 LINE L1 2 723 -1784 1241 166 28 63 chr12 25065839 25066263 -119216226 - L1MC/D LINE L1 -476 5704 5323 2415 88 0 3 chr12 25066263 25066569 -119215920 - AluSg SINE Alu -5 305 1 4516 263 111 32 chr12 25066575 25068276 -119214213 - L2 LINE L2 -512 2802 968 674 236 147 23 chr12 25068276 25068534 -119213955 + HAL1 LINE L1 2218 2507 0 345 276 146 20 chr12 25068724 25068970 -119213519 + L1ME4a LINE L1 5628 5904 -217 21 36 0 0 chr12 25069049 25069077 -119213412 + AT_rich Low_complexity Low_complexity 1 28 0 419 295 16 0 chr12 25069999 25070128 -119212361 - MER104 DNA Tc2 -11 169 39 6852 217 24 47 chr12 25070429 25072389 -119210100 + L1MB2 LINE L1 3424 5338 -815 2092 124 7 10 chr12 25073701 25073873 -119208616 - AluSx SINE Alu -7 305 133 2263 107 0 0 chr12 25073873 25074171 -119208318 - AluSq SINE Alu -15 298 1 2092 124 7 10 chr12 25074171 25074304 -119208185 - AluSx SINE Alu -179 133 1 21 0 0 0 chr12 25074316 25074337 -119208152 + AT_rich Low_complexity Low_complexity 1 21 0 3985 171 64 20 chr12 25074345 25075160 -119207329 + L1MB2 LINE L1 5319 6169 -2 1810 138 0 83 chr12 25075727 25076053 -119206436 - AluJo SINE Alu -13 299 1 26 0 0 0 chr12 25076676 25076702 -119205787 + AT_rich Low_complexity Low_complexity 1 26 0 252 226 0 0 chr12 25077052 25077114 -119205375 + (TAA)n Simple_repeat Simple_repeat 2 63 0 282 316 11 42 chr12 25077209 25077304 -119205185 + MIR SINE MIR 12 103 -159 552 218 56 7 chr12 25077381 25077523 -119204966 - MIR SINE MIR 0 262 114 379 191 122 82 chr12 25077616 25077763 -119204726 - MIR SINE MIR -104 158 6 1679 171 33 21 chr12 25078299 25078632 -119203857 - MER1B DNA MER1_type 0 337 1 2307 115 0 0 chr12 25078821 25079133 -119203356 + AluSx SINE Alu 1 312 0 874 296 156 39 chr12 25079375 25080151 -119202338 + L2 LINE L2 1783 2649 -665 794 184 184 10 chr12 25080340 25080536 -119201953 - MER2 DNA MER2_type 0 345 116 3053 205 28 66 chr12 25080540 25081399 -119201090 + LTR1B LTR ERV1 1 826 0 535 187 9 9 chr12 25081400 25081507 -119200982 - MER2 DNA MER2_type -232 113 7 252 0 0 0 chr12 25081720 25081748 -119200741 + (CA)n Simple_repeat Simple_repeat 2 29 0 1783 198 0 6 chr12 25081870 25082183 -119200306 - AluJo SINE Alu -1 311 1 329 319 67 8 chr12 25082530 25082723 -119199766 + MIR SINE MIR 8 208 -54 2002 149 3 3 chr12 25083642 25083971 -119198518 - AluJb SINE Alu 0 329 1 1066 173 51 46 chr12 25084172 25084369 -119198120 + AluJo SINE Alu 78 275 -37 303 296 75 44 chr12 25084395 25084554 -119197935 - L1MC4a LINE L1 -1868 5940 5777 754 290 39 23 chr12 25084557 25084730 -119197759 - L1MC4a LINE L1 -2076 5732 5550 1688 147 45 33 chr12 25084730 25084822 -119197667 + MER44D DNA MER2_type 2 91 -2400 2416 52 0 7 chr12 25084822 25085108 -119197381 - AluY SINE Alu -27 284 1 1688 147 45 33 chr12 25085108 25085348 -119197141 + MER44D DNA MER2_type 91 608 -1 754 290 39 23 chr12 25085348 25085481 -119197008 - L1MC4a LINE L1 -2258 5550 5421 2498 74 0 3 chr12 25085637 25085949 -119196540 + AluY SINE Alu 1 311 0 22 56 0 0 chr12 25086394 25086430 -119196059 + AT_rich Low_complexity Low_complexity 1 36 0 28 71 0 0 chr12 25087746 25087802 -119194687 + AT_rich Low_complexity Low_complexity 1 56 0 300 279 91 32 chr12 25088074 25088228 -119194261 - MIR SINE MIR -51 211 49 251 373 71 8 chr12 25088545 25088671 -119193818 - L2 LINE L2 -5 3267 3134 37 39 0 0 chr12 25088817 25088868 -119193621 + AT_rich Low_complexity Low_complexity 1 51 0 691 36 0 87 chr12 25088895 25089090 -119193399 + (TA)n Simple_repeat Simple_repeat 2 179 0 1524 219 23 7 chr12 25089125 25089427 -119193062 + AluJo SINE Alu 6 312 0 468 51 0 0 chr12 25090723 25090782 -119191707 + (CA)n Simple_repeat Simple_repeat 2 60 0 378 301 103 19 chr12 25092122 25092278 -119190211 - MIR SINE MIR -71 191 23 701 184 72 43 chr12 25092308 25092515 -119189974 - L1MC5 LINE L1 -48 7913 7701 189 264 57 0 chr12 25092920 25092973 -119189516 - L2 LINE L2 -7 3306 3251 182 286 116 18 chr12 25093102 25093214 -119189275 - MIR3 SINE MIR -4 204 82 26 50 0 0 chr12 25093661 25093701 -119188788 + AT_rich Low_complexity Low_complexity 1 40 0 2260 112 3 3 chr12 25094054 25094367 -119188122 - AluSq SINE Alu 0 313 1 447 297 8 24 chr12 25094579 25094711 -119187778 + MIR SINE MIR 31 160 -48 1790 115 40 0 chr12 25094921 25095174 -119187315 - AluSq SINE Alu -8 305 43 4106 181 18 34 chr12 25095275 25096191 -119186298 + L1MB7 LINE L1 5273 6173 -11 338 253 13 0 chr12 25097513 25097588 -119184901 + MER21B LTR ERV1 19 94 -769 * 2931 201 38 68 chr12 25097587 25098020 -119184469 + MER21B LTR ERV1 44 443 -420 1610 192 14 0 chr12 25098020 25098148 -119184341 + AluJb SINE Alu 3 128 -192 2320 111 0 0 chr12 25098148 25098454 -119184035 + AluSx SINE Alu 1 306 -6 1610 192 14 0 chr12 25098454 25098639 -119183850 + AluJb SINE Alu 128 320 0 2931 201 38 68 chr12 25098639 25099047 -119183442 + MER21B LTR ERV1 443 862 -1 2078 125 44 0 chr12 25099339 25099635 -119182854 + AluSx SINE Alu 1 309 -3 219 209 30 0 chr12 25100122 25100189 -119182300 + (TAA)n Simple_repeat Simple_repeat 2 70 0 842 213 85 38 chr12 25100250 25100319 -119182170 + MER58A DNA MER1_type 2 66 -2354 1858 155 42 0 chr12 25100319 25100603 -119181886 + AluJb SINE Alu 1 296 -16 842 213 85 38 chr12 25100603 25100744 -119181745 + MER58A DNA MER1_type 66 222 -2 499 306 7 28 chr12 25100869 25101013 -119181476 + MIR SINE MIR 2 142 -120 735 176 13 13 chr12 25101018 25101171 -119181318 + MIR SINE MIR 86 238 -24 2150 146 0 0 chr12 25101172 25101481 -119181008 - AluSx SINE Alu -3 309 1 222 300 63 90 chr12 25101895 25102150 -119180339 + L2 LINE L2 2881 3195 -77 653 150 108 0 chr12 25102150 25102270 -119180219 - FLAM_C SINE Alu 0 133 1 222 300 63 90 chr12 25102270 25102346 -119180143 + L2 LINE L2 3195 3272 0 1974 89 43 0 chr12 25102937 25103194 -119179295 + AluSx SINE Alu 1 268 -44 21 0 0 0 chr12 25104732 25104753 -119177736 + AT_rich Low_complexity Low_complexity 1 21 0 1737 188 3 3 chr12 25104756 25105044 -119177445 - AluJb SINE Alu -22 290 3 1950 141 40 23 chr12 25105321 25105625 -119176864 + AluSx SINE Alu 1 309 -3 245 262 262 0 chr12 25105628 25105712 -119176777 - L3 LINE CR1 -32 1545 1440 2182 114 0 10 chr12 25106635 25106934 -119175555 + AluSx SINE Alu 1 296 -16 2290 216 132 19 chr12 25107789 25108648 -119173841 + L1ME2 LINE L1 5205 6164 0 2162 144 0 0 chr12 25108730 25109036 -119173453 + AluJo SINE Alu 1 306 -6 207 100 0 0 chr12 25109041 25109071 -119173418 + (CCTA)n Simple_repeat Simple_repeat 2 31 0 377 371 0 0 chr12 25109729 25109869 -119172620 - MIR SINE MIR -120 142 3 2489 68 9 0 chr12 25110499 25110825 -119171664 + L1PA5 LINE L1 5821 6149 -5 1002 108 0 0 chr12 25112208 25112338 -119170151 - AluJb SINE Alu -181 131 2 38 39 0 0 chr12 25112470 25112522 -119169967 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr12 25114062 25114084 -119168405 + (A)n Simple_repeat Simple_repeat 1 22 0 201 343 14 0 chr12 25114211 25114281 -119168208 - MIR3 SINE MIR -11 197 127 979 87 0 47 chr12 25115127 25115143 -119167346 - AluY SINE Alu -2 309 294 4043 128 14 22 chr12 25115143 25115729 -119166760 - L1MB1 LINE L1 -1 7586 6997 213 65 0 0 chr12 25115729 25115760 -119166729 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2171 71 4 4 chr12 25115760 25116040 -119166449 - AluSc SINE Alu -29 280 1 4043 128 14 22 chr12 25116040 25116148 -119166341 - L1MB1 LINE L1 -588 6999 6896 979 87 0 47 chr12 25116148 25116280 -119166209 - AluY SINE Alu -17 294 168 2409 72 13 3 chr12 25116280 25116584 -119165905 - AluY SINE Alu -4 307 1 11568 194 55 34 chr12 25116594 25116829 -119165660 - L1MB1 LINE L1 -694 6893 6664 6036 87 31 16 chr12 25116829 25117692 -119164797 + L1PA11 LINE L1 4438 5286 -888 2267 94 7 19 chr12 25117692 25117999 -119164490 + AluSx SINE Alu 1 303 -9 6036 87 31 16 chr12 25117999 25118839 -119163650 + L1PA11 LINE L1 5286 6174 0 11568 194 55 34 chr12 25118839 25122297 -119160192 - L1MB1 LINE L1 -923 6664 3083 2324 279 63 38 chr12 25122348 25123266 -119159223 - L1MB1 LINE L1 -4950 2536 1596 2287 89 0 3 chr12 25123524 25123816 -119158673 + AluSc SINE Alu 1 291 -18 626 329 77 11 chr12 25123953 25124227 -119158262 + L2 LINE L2 2340 2631 -683 423 68 0 0 chr12 25124274 25124333 -119158156 + (CA)n Simple_repeat Simple_repeat 2 60 0 245 254 0 0 chr12 25124334 25124397 -119158092 + MER112 DNA MER1_type 87 149 -111 1590 152 36 110 chr12 25124482 25124818 -119157671 + AluSx SINE Alu 1 311 -1 202 263 125 0 chr12 25124820 25124900 -119157589 + L2 LINE L2 2625 2714 -600 1103 262 89 14 chr12 25124931 25125433 -119157056 + L2 LINE L2 2702 3239 -74 1725 168 19 16 chr12 25125753 25126062 -119156427 - AluJo SINE Alu -2 310 1 440 214 20 41 chr12 25126272 25126370 -119156119 + MIR SINE MIR 20 115 -147 2520 48 0 0 chr12 25126560 25126854 -119155635 + AluY SINE Alu 2 295 -16 232 337 92 0 chr12 25127139 25127237 -119155252 - L2 LINE L2 -2 3311 3205 456 298 75 0 chr12 25127421 25127582 -119154907 + MIR3 SINE MIR 36 208 0 2367 95 7 0 chr12 25127632 25127928 -119154561 - AluSx SINE Alu -14 298 1 2068 121 7 0 chr12 25128712 25128992 -119153497 + AluSx SINE Alu 23 304 -8 207 224 20 20 chr12 25130056 25130105 -119152384 - L2 LINE L2 -31 3241 3193 261 294 33 11 chr12 25132538 25132630 -119149859 - L2 LINE L2 -33 3239 3146 553 205 87 25 chr12 25132652 25132813 -119149676 + Charlie8 DNA MER1_type 65 235 -2182 2217 115 3 3 chr12 25133034 25133338 -119149151 + AluSg SINE Alu 1 304 -6 1390 201 28 22 chr12 25133390 25133749 -119148740 + MLT1A1 LTR MaLR 5 365 0 2200 93 30 0 chr12 25134327 25134628 -119147861 + AluSp SINE Alu 1 310 -3 207 288 34 0 chr12 25134909 25134968 -119147521 + L2 LINE L2 3244 3304 -9 2210 102 10 3 chr12 25135602 25135895 -119146594 + AluSx SINE Alu 1 295 -17 255 241 102 66 chr12 25136151 25136317 -119146172 - MIR SINE MIR -88 174 3 967 178 0 22 chr12 25136441 25136621 -119145868 + FRAM SINE Alu 1 173 -3 370 333 90 7 chr12 25136837 25136981 -119145508 - MIR SINE MIR -71 191 36 1304 188 6 113 chr12 25137057 25137377 -119145112 + AluJo SINE Alu 1 286 -16 24 0 0 0 chr12 25137828 25137852 -119144637 + AT_rich Low_complexity Low_complexity 1 24 0 3399 161 31 31 chr12 25137926 25138064 -119144425 + L1MB7 LINE L1 5469 5606 -578 2109 121 3 0 chr12 25138064 25138372 -119144117 + AluSq SINE Alu 1 309 0 3399 161 31 31 chr12 25138372 25138595 -119143894 + L1MB7 LINE L1 5606 5828 -356 2441 85 0 0 chr12 25138595 25138900 -119143589 + AluY SINE Alu 1 305 -6 3399 161 31 31 chr12 25138900 25139242 -119143247 + L1MB7 LINE L1 5827 6174 -10 2035 258 89 10 chr12 25139607 25140112 -119142377 + L2 LINE L2 758 1324 -1990 953 184 8 98 chr12 25140112 25140357 -119142132 + MER58A DNA MER1_type 1 223 -1 2035 258 89 10 chr12 25140357 25140479 -119142010 + L2 LINE L2 1324 1435 -1879 1706 239 83 8 chr12 25140496 25140755 -119141734 + L2 LINE L2 2505 2743 -570 230 0 33 0 chr12 25140755 25140785 -119141704 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1706 239 83 8 chr12 25140785 25141127 -119141362 + L2 LINE L2 2743 3153 -160 246 271 0 0 chr12 25141894 25141953 -119140536 - MIR SINE MIR -54 208 150 23 0 0 0 chr12 25142433 25142456 -119140033 + AT_rich Low_complexity Low_complexity 1 23 0 2433 95 0 0 chr12 25143137 25143443 -119139046 - AluSq SINE Alu -5 308 3 1842 149 14 0 chr12 25143771 25144047 -119138442 - AluSx SINE Alu -2 310 31 533 299 64 0 chr12 25144114 25144301 -119138188 - MIR SINE MIR -49 213 15 1090 182 0 0 chr12 25145020 25145196 -119137293 + AluJb SINE Alu 137 312 0 518 250 43 7 chr12 25145830 25145970 -119136519 - L2 LINE L2 -9 3304 3160 331 239 37 18 chr12 25145996 25146105 -119136384 + L1ME LINE L1 5688 5798 -323 416 317 35 28 chr12 25146201 25146346 -119136143 - L2 LINE L2 -6 3266 3121 234 317 61 12 chr12 25146412 25146494 -119135995 - L2 LINE L2 -32 3240 3155 2863 193 76 63 chr12 25146494 25147309 -119135180 + LTR1B LTR ERV1 1 826 0 390 222 17 26 chr12 25147478 25147595 -119134894 + LTR67 LTR ERVL 435 550 -7 1659 174 3 37 chr12 25147781 25148102 -119134387 + AluJo SINE Alu 1 310 -2 2630 152 19 42 chr12 25148111 25148546 -119133943 + L1MB7 LINE L1 5669 6091 -93 2156 156 0 0 chr12 25148546 25148853 -119133636 - AluSx SINE Alu -5 307 1 2630 152 19 42 chr12 25148853 25148945 -119133544 + L1MB7 LINE L1 6091 6184 0 2155 110 52 0 chr12 25149517 25149808 -119132681 - AluSx SINE Alu -6 306 1 2239 117 0 0 chr12 25150076 25150375 -119132114 - AluSx SINE Alu -13 299 1 225 65 0 0 chr12 25151169 25151200 -119131289 + (T)n Simple_repeat Simple_repeat 1 31 0 180 136 91 23 chr12 25151259 25151303 -119131186 - L2 LINE L2 -4 3309 3263 28 0 0 0 chr12 25152038 25152066 -119130423 + AT_rich Low_complexity Low_complexity 1 28 0 2610 51 0 3 chr12 25152114 25152426 -119130063 + AluY SINE Alu 1 311 0 287 289 79 69 chr12 25152600 25152788 -119129701 - L1ME LINE L1 -298 5823 5639 1954 154 0 3 chr12 25152788 25153094 -119129395 - AluJo SINE Alu -7 305 1 287 289 79 69 chr12 25153094 25153295 -119129194 - L1ME LINE L1 -482 5639 5425 1941 139 14 0 chr12 25153451 25153739 -119128750 - AluSx SINE Alu -16 296 5 2270 112 0 13 chr12 25153830 25154144 -119128345 + AluSx SINE Alu 1 310 -2 726 178 98 25 chr12 25154468 25154631 -119127858 + MER5A DNA MER1_type 1 175 -14 547 242 82 41 chr12 25155050 25155244 -119127245 + MIR SINE MIR 4 205 -57 1897 154 38 0 chr12 25155800 25156093 -119126396 - AluJb SINE Alu -7 305 2 1315 218 43 94 chr12 25156221 25156708 -119125781 + MLT2B1 LTR ERVL 1 462 -58 1941 155 0 10 chr12 25156977 25157267 -119125222 - AluJo SINE Alu -24 288 2 2030 152 0 0 chr12 25157535 25157832 -119124657 - AluSx SINE Alu -15 297 1 838 148 7 7 chr12 25157834 25157969 -119124520 - AluJo SINE Alu -177 135 1 1310 231 108 67 chr12 25157969 25158225 -119124264 + L1MC5 LINE L1 7001 7245 -716 506 125 0 12 chr12 25158225 25158305 -119124184 + MADE1 DNA Mariner 1 79 -1 1310 231 108 67 chr12 25158305 25158322 -119124167 + L1MC5 LINE L1 7245 7260 -701 201 39 0 0 chr12 25158322 25158348 -119124141 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1310 231 108 67 chr12 25158348 25158467 -119124022 + L1MC5 LINE L1 7260 7373 -588 2259 109 0 0 chr12 25158467 25158752 -119123737 + AluSq SINE Alu 1 285 -28 1310 231 108 67 chr12 25158752 25159154 -119123335 + L1MC5 LINE L1 7373 7830 -131 329 274 59 15 chr12 25159262 25159397 -119123092 + L1ME4a LINE L1 5975 6115 -6 5243 145 39 0 chr12 25159410 25160510 -119121979 - L1PA16 LINE L1 0 6166 5017 183 208 0 42 chr12 25160702 25160750 -119121739 - L3 LINE CR1 -910 667 622 638 283 143 0 chr12 25162151 25162374 -119120115 - MIR SINE MIR 0 262 8 436 290 140 21 chr12 25162455 25162648 -119119841 - MIR SINE MIR -14 248 33 607 194 37 30 chr12 25162779 25162913 -119119576 + AluJb SINE Alu 137 271 -41 207 0 0 0 chr12 25162922 25162945 -119119544 + (ATTAG)n Simple_repeat Simple_repeat 5 27 0 2189 129 3 0 chr12 25163347 25163656 -119118833 + AluSx SINE Alu 1 310 -2 261 269 10 48 chr12 25163964 25164068 -119118421 + LTR16A1 LTR ERVL 43 142 -315 2329 72 24 3 chr12 25164227 25164518 -119117971 + AluSg SINE Alu 1 297 -13 1259 159 0 56 chr12 25164820 25165052 -119117437 - AluJb SINE Alu -7 305 87 874 146 28 14 chr12 25165651 25165795 -119116694 - FAM SINE Alu -16 169 24 1712 169 4 4 chr12 25165834 25166113 -119116376 - AluSx SINE Alu -21 291 13 411 289 132 0 chr12 25166162 25166276 -119116213 - L2 LINE L2 -11 3261 3133 817 154 20 56 chr12 25166292 25166487 -119116002 - MER53 DNA DNA 0 189 2 825 110 0 0 chr12 25168958 25169067 -119113422 + AluJ SINE Alu 3 111 -201 1765 200 0 0 chr12 25169178 25169478 -119113011 - AluSx SINE Alu -12 300 1 871 259 29 13 chr12 25169535 25169774 -119112715 + MIR SINE MIR 19 261 -1 1692 168 33 0 chr12 25170812 25171116 -119111373 + AluSp SINE Alu 1 313 0 850 20 0 0 chr12 25171120 25171218 -119111271 + SVA Other Other 1288 1385 -1 24 0 0 0 chr12 25171218 25171242 -119111247 + AT_rich Low_complexity Low_complexity 1 24 0 1104 125 26 31 chr12 25171244 25171436 -119111053 + AluJ SINE Alu 120 310 -2 1771 126 20 0 chr12 25171632 25171879 -119110610 - AluSx SINE Alu -27 285 34 833 273 80 22 chr12 25172225 25172588 -119109901 + LTR33 LTR ERVL 54 437 -84 21 0 0 0 chr12 25172615 25172636 -119109853 + AT_rich Low_complexity Low_complexity 1 21 0 1762 148 20 40 chr12 25172886 25173184 -119109305 - AluJb SINE Alu -20 292 1 696 227 87 0 chr12 25173192 25173364 -119109125 - L1MC/D LINE L1 -2211 5597 5411 775 105 70 63 chr12 25173368 25173511 -119108978 + BC200 scRNA scRNA 6 149 -51 338 245 152 31 chr12 25173514 25173684 -119108805 - L1MC/D LINE L1 -749 5397 5237 464 274 42 19 chr12 25173957 25174169 -119108320 + L1MC4a LINE L1 5635 5851 -1957 213 115 39 19 chr12 25174240 25174292 -119108197 + A-rich Low_complexity Low_complexity 2 54 0 2054 131 0 16 chr12 25174751 25175063 -119107426 + AluJb SINE Alu 3 309 -3 1450 263 82 45 chr12 25175338 25176000 -119106489 - L2 LINE L2 0 3313 2676 1990 146 3 29 chr12 25176000 25176315 -119106174 + AluJb SINE Alu 1 307 -5 1450 263 82 45 chr12 25176315 25176595 -119105894 - L2 LINE L2 -637 2676 2327 594 181 79 39 chr12 25176595 25176722 -119105767 + FLAM_C SINE Alu 1 132 -1 1450 263 82 45 chr12 25176722 25176744 -119105745 - L2 LINE L2 -986 2327 2307 1613 143 31 17 chr12 25176804 25177097 -119105392 - L1MA8 LINE L1 -2 6289 5993 866 147 0 0 chr12 25177163 25177279 -119105210 + FLAM_C SINE Alu 1 116 -27 218 54 0 27 chr12 25177279 25177316 -119105173 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 3906 239 101 23 chr12 25177348 25177854 -119104635 - L2 LINE L2 -1001 2313 1848 2332 102 3 0 chr12 25177854 25178159 -119104330 + AluSq SINE Alu 1 306 -7 3906 239 101 23 chr12 25178159 25179056 -119103433 - L2 LINE L2 -1466 1848 800 293 271 0 0 chr12 25179056 25179115 -119103374 + MLT-int LTR MaLR 925 983 -752 433 197 136 91 chr12 25179162 25179193 -119103296 + L2 LINE L2 1747 1775 -1539 2075 121 0 27 chr12 25179193 25179490 -119102999 - AluSx SINE Alu -23 289 1 433 197 136 91 chr12 25179490 25179656 -119102833 + L2 LINE L2 1775 1953 -1361 2276 105 0 13 chr12 25180450 25180756 -119101733 - AluSg SINE Alu -8 302 1 1586 172 71 68 chr12 25181242 25181332 -119101157 + MSTD LTR MaLR 1 89 -307 2605 62 0 0 chr12 25181332 25181637 -119100852 + AluY SINE Alu 1 305 -6 1586 172 71 68 chr12 25181637 25181941 -119100548 + MSTD LTR MaLR 89 396 0 2011 228 7 2 chr12 25181943 25182369 -119100120 + MSTD-int LTR MaLR 2 429 -1306 2448 238 85 65 chr12 25182370 25183089 -119099400 + MSTD-int LTR MaLR 644 1376 -359 937 220 6 0 chr12 25183090 25183258 -119099231 - FAM SINE Alu -16 169 1 1794 193 57 8 chr12 25183260 25183612 -119098877 + MSTD-int LTR MaLR 1367 1735 0 1713 201 91 3 chr12 25183613 25183976 -119098513 + MSTD LTR MaLR 2 396 0 628 239 184 5 chr12 25184146 25184364 -119098125 + MIR SINE MIR 2 258 -4 728 217 47 113 chr12 25184422 25184826 -119097663 - MLT1F1 LTR MaLR -8 534 55 1232 160 19 123 chr12 25185235 25185360 -119097129 + AluJo SINE Alu 1 137 -175 2111 96 38 14 chr12 25185360 25185652 -119096837 + AluSg SINE Alu 12 310 0 1232 160 19 123 chr12 25185652 25185844 -119096645 + AluJo SINE Alu 137 285 -27 189 0 0 0 chr12 25185844 25185865 -119096624 + (CATA)n Simple_repeat Simple_repeat 2 22 0 1404 210 35 43 chr12 25186599 25186971 -119095518 - MLT1B LTR MaLR 0 390 22 1621 168 31 3 chr12 25187023 25187309 -119095180 - AluJb SINE Alu -10 302 9 2684 43 0 0 chr12 25187477 25187778 -119094711 - AluY SINE Alu -10 301 1 1062 141 23 6 chr12 25188048 25188225 -119094264 - MER3 DNA MER1_type -28 181 2 1725 162 67 0 chr12 25188607 25188891 -119093598 + AluJb SINE Alu 1 303 -9 741 279 37 25 chr12 25188967 25189211 -119093278 + MIR SINE MIR 8 254 -8 933 109 23 0 chr12 25189467 25189595 -119092894 - FLAM_C SINE Alu -2 131 1 2178 116 0 19 chr12 25189714 25190025 -119092464 - AluSq SINE Alu -8 305 1 844 174 45 13 chr12 25190028 25190183 -119092306 - FRAM SINE Alu -6 160 1 3047 151 43 17 chr12 25190328 25190857 -119091632 - LTR35 LTR ERV1 0 618 76 2207 106 0 0 chr12 25191005 25191321 -119091168 + AluSx SINE Alu 1 316 0 267 203 47 0 chr12 25191431 25191495 -119090994 - L2 LINE L2 -4 3309 3243 25 31 0 0 chr12 25191567 25191599 -119090890 + AT_rich Low_complexity Low_complexity 1 32 0 559 227 80 0 chr12 25192000 25192150 -119090339 + MER20B DNA MER1_type 193 354 -429 2212 109 0 7 chr12 25192226 25192528 -119089961 + AluSx SINE Alu 1 300 -12 2430 124 89 2 chr12 25192696 25193090 -119089399 + MSTA LTR MaLR 1 428 0 323 178 50 30 chr12 25193481 25193582 -119088907 + LTR37B LTR ERV1 244 346 -122 1851 201 41 0 chr12 25193588 25193982 -119088507 - MER41B LTR ERV1 -88 547 138 936 219 31 0 chr12 25194020 25194212 -119088277 - MER41D LTR ERV1 -359 198 1 1961 121 0 15 chr12 25194292 25194608 -119087881 - AluSx SINE Alu 0 326 15 1902 163 0 0 chr12 25194616 25194904 -119087585 - AluJo SINE Alu -24 288 1 252 83 0 0 chr12 25194904 25194940 -119087549 - MER41D-int LTR ERV1 -56 7149 7114 2000 186 9 3 chr12 25195028 25195366 -119087123 - MER41D-int LTR ERV1 -81 6595 6256 496 252 7 7 chr12 25195366 25195505 -119086984 + LTR37B LTR ERV1 328 466 -2 239 210 0 97 chr12 25195789 25195851 -119086638 + MER63A DNA MER1_type 2 57 0 * 3207 142 26 17 chr12 25195829 25196362 -119086127 + MER61E LTR ERV1 4 789 -5 591 292 0 0 chr12 25196377 25196531 -119085958 + MER63A DNA MER1_type 57 210 0 1914 158 3 3 chr12 25197603 25197900 -119084589 - AluJb SINE Alu -15 297 1 1288 243 78 18 chr12 25198357 25198752 -119083737 + L1MEc LINE L1 53 471 -5925 2138 142 0 0 chr12 25199260 25199571 -119082918 - AluSq SINE Alu -2 311 1 956 145 0 0 chr12 25199697 25199828 -119082661 + AluSg SINE Alu 1 131 -179 1498 115 100 2 chr12 25199970 25200289 -119082200 - L1 LINE L1 -3812 3753 3400 3511 128 34 82 chr12 25200298 25200985 -119081504 - MER4A LTR ERV1 -10 654 1 3446 100 14 0 chr12 25200985 25201493 -119080996 - L1 LINE L1 -4162 3403 2889 * 16060 127 9 24 chr12 25201491 25202963 -119079526 - L1 LINE L1 -5187 2378 954 2361 99 0 3 chr12 25202963 25203266 -119079223 - AluSg SINE Alu -8 302 1 16060 127 9 24 chr12 25203266 25204195 -119078294 - L1 LINE L1 -6611 954 13 196 303 0 15 chr12 25204349 25204415 -119078074 - MER5A DNA MER1_type -68 121 57 203 293 0 0 chr12 25204416 25204474 -119078015 - L2 LINE L2 -2503 811 754 526 224 82 0 chr12 25204805 25204952 -119077537 - MIR SINE MIR 0 262 104 2367 106 0 0 chr12 25204997 25205300 -119077189 + AluSx SINE Alu 1 303 -9 2127 122 30 3 chr12 25205524 25205828 -119076661 + AluSx SINE Alu 1 312 0 237 108 0 0 chr12 25205870 25205907 -119076582 + (CA)n Simple_repeat Simple_repeat 2 38 0 665 282 75 19 chr12 25206074 25206340 -119076149 - MLT1L LTR MaLR -13 602 322 1012 128 34 34 chr12 25206353 25206532 -119075957 + L1MB1 LINE L1 5953 6131 -37 1814 168 3 0 chr12 25206532 25206842 -119075647 + AluJo SINE Alu 1 311 0 2209 74 20 34 chr12 25206846 25207144 -119075345 + AluSp SINE Alu 4 297 -16 216 257 0 0 chr12 25207218 25207288 -119075201 + GA-rich Low_complexity Low_complexity 2 71 0 235 282 64 13 chr12 25207312 25207390 -119075099 - MLT1L LTR MaLR -319 296 215 1829 170 23 0 chr12 25207571 25207871 -119074618 - AluJb SINE Alu -3 309 3 1963 112 3 67 chr12 25207969 25208299 -119074190 + AluSq SINE Alu 1 309 -4 2283 115 19 43 chr12 25208514 25208887 -119073602 - THE1B LTR MaLR 0 364 1 1264 150 4 64 chr12 25208915 25208961 -119073528 - MER20B DNA MER1_type 0 219 172 2217 110 0 10 chr12 25208961 25209261 -119073228 - AluSx SINE Alu -15 297 1 1264 150 4 64 chr12 25209261 25209447 -119073042 - MER20B DNA MER1_type -47 172 1 2524 63 3 0 chr12 25210406 25210709 -119071780 - AluY SINE Alu -7 304 1 201 121 0 0 chr12 25210845 25210878 -119071611 + (TG)n Simple_repeat Simple_repeat 1 33 0 1599 157 85 24 chr12 25211594 25211888 -119070601 - AluJo SINE Alu 0 312 1 28 0 0 0 chr12 25211943 25211971 -119070518 + AT_rich Low_complexity Low_complexity 1 28 0 505 164 19 9 chr12 25212031 25212148 -119070341 + MER61B LTR ERV1 33 106 -319 1709 206 12 12 chr12 25212155 25212494 -119069995 + LTR27 LTR ERV1 298 636 0 2181 103 26 10 chr12 25212643 25212945 -119069544 - AluSx SINE Alu -5 307 1 2305 159 11 16 chr12 25212946 25213386 -119069103 - L1MB7 LINE L1 -4 6180 5743 288 327 30 0 chr12 25213410 25213511 -119068978 + L2 LINE L2 3137 3240 -32 200 349 15 0 chr12 25214049 25214115 -119068374 - L2 LINE L2 -87 3185 3119 710 162 22 22 chr12 25214129 25214265 -119068224 + FLAM_C SINE Alu 1 136 -7 405 0 0 0 chr12 25217046 25217091 -119065398 + (TG)n Simple_repeat Simple_repeat 1 45 0 2034 147 82 31 chr12 25217526 25217942 -119064547 + LTR23 LTR ERV1 1 437 0 1722 158 42 3 chr12 25218414 25218698 -119063791 - AluSx SINE Alu -7 305 11 2556 57 0 0 chr12 25220255 25220556 -119061933 - AluY SINE Alu -10 301 1 2091 140 3 0 chr12 25220740 25221047 -119061442 - AluJb SINE Alu -4 308 1 2099 100 0 11 chr12 25221699 25221980 -119060509 - AluSx SINE Alu -14 298 21 341 309 63 17 chr12 25221986 25222161 -119060328 + L2 LINE L2 2456 2638 -676 326 176 40 14 chr12 25224059 25224133 -119058356 + L1MC/D LINE L1 5658 5733 -2075 2186 120 13 3 chr12 25224396 25224704 -119057785 - AluSx SINE Alu -1 311 1 2100 121 4 0 chr12 25225085 25225394 -119057095 + AluSx SINE Alu 1 310 0 205 290 16 0 chr12 25225470 25225532 -119056957 - L2 LINE L2 -209 3063 3001 268 335 166 24 chr12 25225764 25226338 -119056151 + L2 LINE L2 158 812 -2502 818 166 25 55 chr12 25226578 25226767 -119055722 + AluJb SINE Alu 140 312 0 574 322 123 45 chr12 25226782 25227270 -119055219 + L2 LINE L2 2736 3255 -17 667 236 38 6 chr12 25227681 25227838 -119054651 + FAM SINE Alu 13 174 -11 240 163 0 0 chr12 25227984 25228027 -119054462 + (TG)n Simple_repeat Simple_repeat 1 43 0 2527 173 177 106 chr12 25228666 25229470 -119053019 + MER21B LTR ERV1 1 861 -2 209 32 0 32 chr12 25229530 25229561 -119052928 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 554 269 109 25 chr12 25229788 25229924 -119052565 - MIR SINE MIR 0 262 139 1978 147 65 37 chr12 25229924 25230278 -119052211 - THE1B LTR MaLR 0 364 1 554 269 109 25 chr12 25230278 25230379 -119052110 - MIR SINE MIR -123 139 5 187 267 200 25 chr12 25230967 25231087 -119051402 - L2 LINE L2 -4 3309 3169 256 224 24 71 chr12 25231160 25231245 -119051244 + Charlie2 DNA MER1_type 27 107 -2755 1235 134 20 111 chr12 25231295 25231621 -119050868 + LOR1-int LTR ERV1 4545 4853 -1410 191 35 0 35 chr12 25232293 25232322 -119050167 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 5286 135 27 47 chr12 25232350 25232515 -119049974 + LOR1-int LTR ERV1 3441 3608 -2723 2110 60 84 14 chr12 25232515 25232799 -119049690 + AluY SINE Alu 3 306 -5 5286 135 27 47 chr12 25232799 25233156 -119049333 + LOR1-int LTR ERV1 3608 3971 -2360 2012 106 0 7 chr12 25233156 25233481 -119049008 + AluSg SINE Alu 1 323 0 5286 135 27 47 chr12 25233481 25233825 -119048664 + LOR1-int LTR ERV1 3971 4320 -2011 2096 129 0 3 chr12 25233825 25234119 -119048370 - AluSx SINE Alu -19 293 1 5286 135 27 47 chr12 25234119 25234203 -119048286 + LOR1-int LTR ERV1 4320 5430 -901 23 0 0 0 chr12 25234837 25234860 -119047629 + AT_rich Low_complexity Low_complexity 1 23 0 3829 153 64 26 chr12 25234872 25235591 -119046898 + LOR1-int LTR ERV1 5422 6167 -164 1977 107 48 0 chr12 25235612 25235733 -119046756 + AluSp SINE Alu 1 115 -216 245 51 26 0 chr12 25235733 25235772 -119046717 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 1977 107 48 0 chr12 25235772 25235968 -119046521 + AluSp SINE Alu 115 331 0 1765 80 43 114 chr12 25235968 25236012 -119046477 - LTR24B LTR ERV1 -274 302 256 1565 177 30 10 chr12 25236012 25236312 -119046177 - AluJo SINE Alu -2 310 5 1765 80 43 114 chr12 25236312 25236592 -119045897 - LTR24B LTR ERV1 -320 256 1 335 330 94 35 chr12 25236882 25237221 -119045268 - HAL1 LINE L1 -2144 363 5 956 178 0 0 chr12 25237335 25237492 -119044997 - AluSg/x SINE Alu 0 312 156 11204 42 13 32 chr12 25237704 25239105 -119043384 - SVA Other Other -6 1380 7 2443 155 57 26 chr12 25239139 25239654 -119042835 - MLT2C2 LTR ERVL 0 520 2 955 263 45 48 chr12 25239926 25240367 -119042122 - L1MC4 LINE L1 -390 7652 7213 330 273 2 23 chr12 25240835 25240952 -119041537 + MIR SINE MIR 39 152 -81 1725 132 28 38 chr12 25240963 25241251 -119041238 + AluJb SINE Alu 1 285 -27 2985 149 61 16 chr12 25241349 25241784 -119040705 + MER68 LTR ERV1 1 464 -98 2218 97 3 3 chr12 25241784 25242082 -119040407 - AluSc SINE Alu -11 298 1 2985 149 61 16 chr12 25242082 25242155 -119040334 + MER68 LTR ERV1 464 532 -30 303 173 0 99 chr12 25242155 25242236 -119040253 + MIR SINE MIR 116 188 -74 1105 180 12 0 chr12 25242344 25242516 -119039973 + FAM SINE Alu 1 174 -1 240 163 0 0 chr12 25242662 25242705 -119039784 + (TG)n Simple_repeat Simple_repeat 1 43 0 602 177 119 16 chr12 25243344 25243572 -119038917 + MER21B LTR ERV1 1 336 -527 1492 199 7 11 chr12 25243784 25244066 -119038423 + AluSg SINE Alu 16 296 -14 2654 112 18 15 chr12 25244107 25244508 -119037981 + MER39B LTR ERV1 79 480 -173 260 56 28 0 chr12 25245114 25245150 -119037339 - AluJb SINE Alu -167 135 99 * 831 157 17 51 chr12 25245147 25245325 -119037164 + MER39B LTR ERV1 482 653 0 1806 222 92 38 chr12 25245336 25245434 -119037055 + Charlie2b DNA MER1_type 933 1024 -1758 988 150 0 0 chr12 25245434 25245567 -119036922 - FLAM_C SINE Alu 0 133 1 1806 222 92 38 chr12 25245567 25245618 -119036871 + Charlie2b DNA MER1_type 1024 1071 -1711 2345 67 0 20 chr12 25245618 25245917 -119036572 - AluY SINE Alu -18 293 1 1806 222 92 38 chr12 25245917 25246374 -119036115 + Charlie2b DNA MER1_type 1071 1573 -1209 1124 263 62 73 chr12 25246560 25247026 -119035463 + Charlie7 DNA MER1_type 39 509 -2103 2161 96 17 10 chr12 25247026 25247327 -119035162 - AluSx SINE Alu -9 303 1 1124 263 62 73 chr12 25247327 25247614 -119034875 + Charlie7 DNA MER1_type 509 2487 -125 637 223 130 121 chr12 25247663 25247723 -119034766 - MLT1F LTR MaLR 0 595 537 2115 108 0 11 chr12 25247723 25248058 -119034431 - AluSx SINE Alu 0 332 1 637 223 130 121 chr12 25248058 25248450 -119034039 - MLT1F LTR MaLR -58 537 138 731 251 132 8 chr12 25248450 25248701 -119033788 + MLT1C LTR MaLR 186 467 0 442 267 150 16 chr12 25249121 25249308 -119033181 - MIR SINE MIR 0 262 51 936 134 60 21 chr12 25249377 25249394 -119033095 - MER3 DNA MER1_type -37 125 110 1831 156 3 17 chr12 25249394 25249695 -119032794 - AluJb SINE Alu -15 297 1 936 134 60 21 chr12 25249695 25249862 -119032627 - MER3 DNA MER1_type -52 110 1 909 133 0 20 chr12 25250206 25250357 -119032132 - LTR7 LTR ERV1 0 450 303 844 135 21 13 chr12 25250590 25250754 -119031735 - LTR7 LTR ERV1 -233 217 1 223 334 78 43 chr12 25250931 25251278 -119031211 - L2 LINE L2 -337 2977 2619 394 288 27 0 chr12 25251420 25251531 -119030958 + MER58A DNA MER1_type 1 114 0 271 169 93 110 chr12 25251535 25251653 -119030836 - MIR SINE MIR -37 225 110 377 312 117 18 chr12 25251654 25251936 -119030553 + L2 LINE L2 2186 2495 -819 1223 189 9 5 chr12 25251941 25252158 -119030331 - AluJb SINE Alu -9 303 86 223 282 67 87 chr12 25252182 25252331 -119030158 + L2 LINE L2 2543 2688 -626 1480 160 105 91 chr12 25252541 25252960 -119029529 + LTR37A LTR ERV1 1 425 -1 213 367 51 10 chr12 25253115 25253213 -119029276 + L2 LINE L2 2965 3066 -206 305 208 117 0 chr12 25253458 25253535 -119028954 - L2 LINE L2 -1043 2271 2186 1969 137 0 0 chr12 25253647 25253947 -119028542 + AluSx SINE Alu 1 300 -12 219 354 20 20 chr12 25257033 25257132 -119025357 - L2 LINE L2 -23 3290 3192 2090 107 38 3 chr12 25257202 25257491 -119024998 - AluSx SINE Alu -13 299 1 1497 192 19 23 chr12 25257538 25257845 -119024644 - AluJo SINE Alu -6 306 1 207 88 0 0 chr12 25258074 25258108 -119024381 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 4020 112 19 52 chr12 25258113 25258810 -119023679 - L1MA4A LINE L1 -178 6125 5452 2140 117 44 0 chr12 25259334 25259632 -119022857 + AluSx SINE Alu 1 311 -1 2215 124 0 0 chr12 25260300 25260606 -119021883 + AluSx SINE Alu 2 307 -5 200 212 106 59 chr12 25261247 25261332 -119021157 - L2 LINE L2 -1 3271 3183 1991 125 17 0 chr12 25261369 25261664 -119020825 - AluSq SINE Alu -13 300 1 619 216 151 11 chr12 25261668 25261853 -119020636 - MER58A DNA MER1_type -11 213 3 957 136 0 0 chr12 25261999 25262131 -119020358 + FLAM_C SINE Alu 1 132 -11 2008 108 0 7 chr12 25262600 25262878 -119019611 - AluSc SINE Alu -3 306 31 232 270 95 0 chr12 25263520 25263594 -119018895 + Charlie8 DNA MER1_type 31 111 -2306 188 327 55 36 chr12 25264688 25264798 -119017691 + MIR SINE MIR 36 147 -61 208 277 62 0 chr12 25264948 25265013 -119017476 - MIR SINE MIR -141 121 53 1964 161 0 0 chr12 25265282 25265586 -119016903 - AluJo SINE Alu -8 304 1 384 192 512 0 chr12 25265630 25265755 -119016734 - MER5A DNA MER1_type 0 189 1 422 178 41 0 chr12 25265889 25265955 -119016534 + MER21A LTR ERV1 704 772 -159 589 89 0 0 chr12 25265955 25266034 -119016455 + MER41B LTR ERV1 1 79 -556 387 0 0 0 chr12 25266059 25266102 -119016387 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2328 75 0 29 chr12 25266105 25266413 -119016076 + AluY SINE Alu 1 299 -12 303 195 101 101 chr12 25266633 25266802 -119015687 - MLT1G LTR MaLR -36 506 338 * 672 157 0 0 chr12 25266782 25266890 -119015599 - MER41B LTR ERV1 -326 309 202 361 259 65 50 chr12 25266931 25267070 -119015419 - MLT1G LTR MaLR -306 284 144 988 151 13 0 chr12 25267076 25267235 -119015254 - MER21A LTR ERV1 -2 929 769 2688 141 21 0 chr12 25267235 25267653 -119014836 - MER41B LTR ERV1 0 635 209 1641 226 112 70 chr12 25267948 25268350 -119014139 - L1MC5 LINE L1 -131 7830 7446 2256 109 0 0 chr12 25268350 25268635 -119013854 - AluSq SINE Alu -28 285 1 1641 226 112 70 chr12 25268635 25268754 -119013735 - L1MC5 LINE L1 -515 7446 7333 201 39 0 0 chr12 25268754 25268780 -119013709 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1641 226 112 70 chr12 25268780 25268797 -119013692 - L1MC5 LINE L1 -628 7333 7318 547 138 0 12 chr12 25268797 25268877 -119013612 - MADE1 DNA Mariner -1 79 1 1641 226 112 70 chr12 25268877 25269133 -119013356 - L1MC5 LINE L1 -643 7318 7001 1900 128 6 31 chr12 25269133 25269453 -119013036 + AluJb SINE Alu 1 312 0 21 36 0 0 chr12 25269551 25269579 -119012910 + AT_rich Low_complexity Low_complexity 1 28 0 422 231 61 21 chr12 25269683 25270012 -119012477 - L1M4 LINE L1 -3195 2951 2510 1777 154 26 13 chr12 25270898 25271203 -119011286 + AluJb SINE Alu 1 309 -3 1898 147 0 27 chr12 25271567 25271867 -119010622 - AluSx SINE Alu -20 292 1 359 323 40 8 chr12 25272234 25272358 -119010131 - MIR3 SINE MIR -67 141 14 723 273 102 20 chr12 25272677 25273069 -119009420 - L1M4 LINE L1 -814 5332 4909 594 128 34 151 chr12 25273118 25273297 -119009192 - L1MA4 LINE L1 -3 6297 6140 330 183 28 14 chr12 25273644 25273715 -119008774 - MER58 DNA MER1_type -1 2419 2348 349 279 59 0 chr12 25273720 25273856 -119008633 + L1M4 LINE L1 4950 5093 -1053 1727 175 32 0 chr12 25273877 25274162 -119008327 - AluJb SINE Alu -18 294 1 307 277 0 0 chr12 25274176 25274241 -119008248 - MER58 DNA MER1_type -86 255 191 1836 106 68 0 chr12 25275065 25275330 -119007159 - L1PA11 LINE L1 -1 6173 5891 1097 208 24 20 chr12 25275454 25275748 -119006741 - L1M4 LINE L1 -2168 3978 3684 183 80 0 0 chr12 25275748 25275773 -119006716 + (T)n Simple_repeat Simple_repeat 1 25 0 1926 157 25 25 chr12 25275820 25276177 -119006312 + MER47A DNA MER2_type 9 365 -1 235 231 127 29 chr12 25276305 25276411 -119006078 - MER5A DNA MER1_type -6 183 65 241 313 62 0 chr12 25277270 25277350 -119005139 + MER5A DNA MER1_type 75 159 -30 2137 110 3 0 chr12 25277696 25278002 -119004487 - AluSx SINE Alu 0 307 1 1111 163 30 10 chr12 25278238 25278440 -119004049 + MER46A DNA MER2_type 25 230 -6 342 246 56 32 chr12 25280951 25281001 -119001488 - MIR SINE MIR -34 228 181 2221 112 17 0 chr12 25281001 25281296 -119001193 - AluSx SINE Alu -12 300 1 342 246 56 32 chr12 25281296 25281371 -119001118 - MIR SINE MIR -81 181 100 340 299 65 19 chr12 25281401 25281508 -119000981 - L2 LINE L2 -27 3245 3134 187 149 21 21 chr12 25281744 25281791 -119000698 + (CATA)n Simple_repeat Simple_repeat 4 50 0 348 83 0 0 chr12 25282016 25282064 -119000425 + (CA)n Simple_repeat Simple_repeat 2 49 0 1172 238 83 60 chr12 25282392 25282491 -118999998 - L1ME LINE L1 -489 5681 5586 2250 132 52 3 chr12 25282491 25282818 -118999671 - MER61A LTR ERV1 0 343 1 1172 238 83 60 chr12 25282818 25283583 -118998906 - L1ME LINE L1 -584 5586 4805 230 272 7 73 chr12 25283581 25283717 -118998772 - L1MC4a LINE L1 -1873 5935 5809 * 1821 256 118 30 chr12 25283753 25284014 -118998475 - HsTC2c DNA Tc2 -1169 729 493 2246 104 0 0 chr12 25284014 25284313 -118998176 - AluSx SINE Alu -3 309 11 1821 256 118 30 chr12 25284313 25284695 -118997794 - HsTC2c DNA Tc2 -1405 493 29 4728 110 112 111 chr12 25284740 25286151 -118996338 - pTR5 LTR ERV1 -1 2437 741 22 35 0 0 chr12 25286361 25286390 -118996099 + AT_rich Low_complexity Low_complexity 1 29 0 225 149 0 43 chr12 25286390 25286437 -118996052 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 1420 289 120 16 chr12 25286641 25287450 -118995039 - L2 LINE L2 -793 2521 1629 684 227 134 6 chr12 25287877 25288049 -118994440 - MER58A DNA MER1_type -1 223 30 1723 195 0 3 chr12 25288097 25288395 -118994094 - AluJo SINE Alu -15 297 1 272 284 142 16 chr12 25288725 25288852 -118993637 - MIR SINE MIR -18 244 102 1742 197 53 22 chr12 25289279 25289733 -118992756 - MER72 LTR ERV1 0 722 157 3977 160 21 3 chr12 25289738 25290362 -118992127 - MER41B LTR ERV1 0 635 1 5167 134 36 19 chr12 25290362 25291213 -118991276 - MER41B-int LTR ERV1 0 5946 5081 2136 120 3 16 chr12 25292509 25292817 -118989672 - AluSx SINE Alu -8 304 1 437 279 86 21 chr12 25292849 25293082 -118989407 + HAL1 LINE L1 1074 1321 -1186 1556 250 68 51 chr12 25293113 25293802 -118988687 + HAL1 LINE L1 1418 2118 -389 370 306 170 5 chr12 25293822 25294137 -118988352 + L2 LINE L2 2726 3146 -167 1572 157 0 90 chr12 25294274 25294415 -118988074 - AluSx SINE Alu -38 274 173 2420 92 0 0 chr12 25294415 25294721 -118987768 - AluSg SINE Alu -4 306 1 1572 157 0 90 chr12 25294721 25294879 -118987610 - AluSx SINE Alu -139 173 2 602 271 99 0 chr12 25294880 25295061 -118987428 - MIR SINE MIR -59 203 5 1514 155 122 62 chr12 25295116 25295246 -118987243 + THE1C LTR MaLR 1 122 -253 4010 101 87 7 chr12 25295246 25295811 -118986678 - LTR9 LTR ERV1 -2 610 1 1514 155 122 62 chr12 25295811 25296034 -118986455 + THE1C LTR MaLR 122 375 0 233 268 0 56 chr12 25296043 25296114 -118986375 + L2 LINE L2 3247 3313 0 2208 97 4 0 chr12 25296164 25296443 -118986046 - AluSq SINE Alu -12 301 22 200 235 10 61 chr12 25297020 25297118 -118985371 + L2 LINE L2 2540 2632 -682 2307 212 34 48 chr12 25297135 25297782 -118984707 - MLT1D-int LTR MaLR -732 639 2 270 246 0 0 chr12 25297794 25297851 -118984638 - MLT1D LTR MaLR -12 493 437 1793 156 39 3 chr12 25297851 25298133 -118984356 - AluSx SINE Alu -20 292 1 290 337 47 21 chr12 25298624 25298817 -118983672 - L1ME3A LINE L1 -10 6160 5963 273 181 153 0 chr12 25298855 25298927 -118983562 - L1ME3A LINE L1 -201 5969 5887 257 326 183 34 chr12 25299061 25299236 -118983253 - MER115 DNA AcHobo -248 445 245 270 0 0 0 chr12 25299248 25299278 -118983211 + (TA)n Simple_repeat Simple_repeat 1 30 0 2082 138 6 6 chr12 25299278 25299590 -118982899 - AluSx SINE Alu 0 312 1 2280 116 0 0 chr12 25299774 25300084 -118982405 - AluJb SINE Alu -2 310 1 305 208 117 0 chr12 25300196 25300273 -118982216 + L2 LINE L2 2186 2271 -1043 3452 133 4 0 chr12 25301038 25301548 -118980941 - MER41B LTR ERV1 -123 512 1 2212 164 37 35 chr12 25301548 25301943 -118980546 - MER21A LTR ERV1 -159 772 377 249 220 40 0 chr12 25301946 25301996 -118980493 - MER21A LTR ERV1 -667 264 213 773 169 0 42 chr12 25301996 25302138 -118980351 - FLAM_C SINE Alu -3 140 5 867 57 49 16 chr12 25302168 25302290 -118980199 - MER21A LTR ERV1 -775 156 31 750 234 51 11 chr12 25302286 25302461 -118980028 - MLT1G1 LTR MaLR -408 187 6 * 3502 120 102 11 chr12 25302560 25303118 -118979371 - LTR9 LTR ERV1 -3 609 1 308 346 47 0 chr12 25303218 25303325 -118979164 - L2 LINE L2 -1 3312 3201 2071 125 34 0 chr12 25303326 25303621 -118978868 - AluSx SINE Alu -7 305 1 290 337 47 21 chr12 25304112 25304305 -118978184 - L1ME3A LINE L1 -10 6160 5963 273 181 153 0 chr12 25304343 25304415 -118978074 - L1ME3A LINE L1 -201 5969 5887 207 0 0 0 chr12 25304736 25304759 -118977730 + (TA)n Simple_repeat Simple_repeat 1 23 0 1508 124 0 0 chr12 25304759 25304976 -118977513 - AluSg/x SINE Alu -3 309 93 709 135 0 0 chr12 25305000 25305104 -118977385 - FLAM_C SINE Alu -9 134 31 1396 193 53 19 chr12 25305107 25305428 -118977061 + Charlie1 DNA MER1_type 1520 1851 -910 1773 154 49 0 chr12 25305428 25305713 -118976776 - AluJb SINE Alu -13 299 1 1768 242 126 66 chr12 25305716 25307132 -118975357 - L1ME3A LINE L1 -772 5390 3768 4217 129 33 19 chr12 25307217 25307838 -118974651 - L1MA7 LINE L1 -4 6287 5655 2018 175 12 15 chr12 25307838 25308175 -118974314 + MER1B DNA MER1_type 2 337 0 4217 129 33 19 chr12 25308175 25308222 -118974267 - L1MA7 LINE L1 -636 5655 5610 211 70 23 23 chr12 25308222 25308265 -118974224 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 701 234 0 14 chr12 25308268 25308409 -118974080 - AluJo SINE Alu -50 262 124 474 155 134 0 chr12 25308427 25308524 -118973965 - L1MA7 LINE L1 -723 5568 5459 6569 140 19 24 chr12 25308664 25309737 -118972752 + L1M1 LINE L1 1250 2316 -5249 188 327 55 36 chr12 25310143 25310253 -118972236 + MIR SINE MIR 36 147 -61 208 277 62 0 chr12 25310403 25310468 -118972021 - MIR SINE MIR -141 121 53 2264 106 0 7 chr12 25310737 25311039 -118971450 - AluSx SINE Alu -12 300 1 578 212 120 32 chr12 25311048 25311265 -118971224 - MER20B DNA MER1_type -355 428 193 25 31 0 0 chr12 25311665 25311697 -118970792 + AT_rich Low_complexity Low_complexity 1 32 0 291 203 47 0 chr12 25311769 25311833 -118970656 + L2 LINE L2 3243 3309 -4 2243 78 0 7 chr12 25311943 25312260 -118970229 - AluY SINE Alu 0 315 1 1072 141 23 6 chr12 25312530 25312707 -118969782 - MER3 DNA MER1_type -28 181 2 22 0 0 0 chr12 25363724 25363746 -118918743 + AT_rich Low_complexity Low_complexity 1 22 0 2499 172 17 8 chr12 25363791 25364262 -118918227 - L1PA16 LINE L1 -17 6149 5675 1765 136 192 3 chr12 25365099 25365459 -118917030 - MSTA LTR MaLR 0 428 1 2253 167 10 5 chr12 25366485 25366886 -118915603 - MER57A LTR ERV1 0 403 1 277 51 51 0 chr12 25369009 25369048 -118913441 + L1MC2 LINE L1 6110 6150 -194 615 180 14 29 chr12 25369049 25369188 -118913301 + L1MC2 LINE L1 6196 6332 -12 224 227 280 13 chr12 25369599 25369674 -118912815 - MER5B DNA MER1_type -83 95 1 246 136 0 0 chr12 25369750 25369794 -118912695 + (TC)n Simple_repeat Simple_repeat 2 45 0 663 281 114 5 chr12 25369873 25369926 -118912563 + MIR SINE MIR 18 64 -198 1316 175 25 22 chr12 25369926 25370200 -118912289 + L1MC1 LINE L1 6059 6333 0 663 281 114 5 chr12 25370200 25370356 -118912133 + MIR SINE MIR 64 250 -12 320 249 205 44 chr12 25370363 25370554 -118911935 + MIR SINE MIR 6 233 -29 778 162 270 5 chr12 25370554 25370739 -118911750 - MER46A DNA MER2_type -2 234 1 320 249 205 44 chr12 25370739 25370752 -118911737 + MIR SINE MIR 233 243 -19 676 186 0 0 chr12 25371495 25371613 -118910876 - FLAM_C SINE Alu -11 122 5 254 261 63 85 chr12 25371697 25371885 -118910604 - MIR3 SINE MIR -71 191 4 29 28 0 0 chr12 25372017 25372053 -118910436 + AT_rich Low_complexity Low_complexity 1 36 0 1958 139 0 13 chr12 25372159 25372461 -118910028 - AluSx SINE Alu -14 298 1 2551 43 10 0 chr12 25372474 25372775 -118909714 - AluY SINE Alu -7 304 1 226 174 43 0 chr12 25372884 25372930 -118909559 - MLT1K LTR MaLR -2 586 539 2271 77 0 11 chr12 25372934 25373246 -118909243 - AluSp SINE Alu 0 309 1 2076 136 3 0 chr12 25373775 25374070 -118908419 - AluSx SINE Alu -16 296 1 198 0 0 0 chr12 25374170 25374192 -118908297 + (TAATG)n Simple_repeat Simple_repeat 4 25 0 508 199 84 15 chr12 25374737 25374868 -118907621 + MIR SINE MIR 97 236 -26 2091 104 32 29 chr12 25375463 25375771 -118906718 - AluSx SINE Alu -3 309 1 191 312 91 0 chr12 25377915 25377992 -118904497 - L2 LINE L2 -50 3222 3139 590 305 108 36 chr12 25378066 25378400 -118904089 + L2 LINE L2 2953 3310 -3 206 333 77 0 chr12 25379121 25379199 -118903290 - L2 LINE L2 -5 3267 3184 2194 93 45 0 chr12 25379665 25379955 -118902534 + AluSx SINE Alu 1 303 -9 636 208 12 6 chr12 25380244 25380412 -118902077 + CT-rich Low_complexity Low_complexity 4 172 0 1040 99 6 22 chr12 25380417 25380598 -118901891 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1680 176 3 11 chr12 25381501 25381785 -118900704 + AluJo SINE Alu 1 282 -30 398 19 0 19 chr12 25381788 25381840 -118900649 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1635 156 44 60 chr12 25383266 25383581 -118898908 + AluJb SINE Alu 1 310 -2 570 245 20 41 chr12 25383587 25383734 -118898755 + MIR SINE MIR 20 163 -99 24 0 0 0 chr12 25383784 25383808 -118898681 + AT_rich Low_complexity Low_complexity 1 24 0 2282 118 0 0 chr12 25383849 25384155 -118898334 - AluSx SINE Alu -6 306 1 186 226 151 19 chr12 25384331 25384384 -118898105 + MIR SINE MIR 84 143 -119 1096 153 0 0 chr12 25384794 25384964 -118897525 - FAM SINE Alu -1 174 5 2149 132 86 37 chr12 25385656 25385721 -118896768 - Tigger2a DNA MER2_type -2279 429 369 1947 168 0 0 chr12 25385721 25386025 -118896464 - AluJb SINE Alu -8 304 1 2149 132 86 37 chr12 25386025 25386270 -118896219 - Tigger2a DNA MER2_type -2339 369 92 198 0 0 0 chr12 25386270 25386292 -118896197 + (GGA)n Simple_repeat Simple_repeat 2 23 0 2149 132 86 37 chr12 25386292 25386389 -118896100 - Tigger2a DNA MER2_type -2616 92 1 354 45 0 0 chr12 25387575 25387619 -118894870 + (TTTTC)n Simple_repeat Simple_repeat 3 46 0 447 224 79 35 chr12 25387955 25387985 -118894504 - L1ME4a LINE L1 -95 6026 5999 2235 128 0 0 chr12 25387985 25388290 -118894199 - AluSq SINE Alu -8 305 1 447 224 79 35 chr12 25388290 25388326 -118894163 - L1ME4a LINE L1 -122 5999 5966 2103 116 0 3 chr12 25388326 25388668 -118893821 - AluSx SINE Alu 0 341 1 447 224 79 35 chr12 25388668 25388889 -118893600 - L1ME4a LINE L1 -155 5966 5724 813 161 0 0 chr12 25389340 25389464 -118893025 + FLAM_C SINE Alu 1 124 -9 2061 154 0 3 chr12 25389577 25389883 -118892606 - AluSx SINE Alu -7 305 1 5934 177 6 7 chr12 25390237 25391185 -118891304 + L1 LINE L1 4135 5082 -1064 1627 217 0 0 chr12 25391185 25391462 -118891027 - AluJb SINE Alu -35 277 1 5934 177 6 7 chr12 25391462 25391741 -118890748 + L1 LINE L1 5082 5360 -786 3797 139 43 26 chr12 25391727 25392235 -118890254 + L1MA4 LINE L1 5285 5783 -400 * 189 0 0 0 chr12 25392235 25392256 -118890233 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 225 0 0 0 chr12 25392255 25392280 -118890209 + (CA)n Simple_repeat Simple_repeat 2 26 0 3797 139 43 26 chr12 25392256 25392598 -118889891 + L1MA4 LINE L1 5783 6180 -3 1419 205 3 24 chr12 25392796 25393084 -118889405 + AluJo SINE Alu 5 286 -26 483 118 0 0 chr12 25393084 25393160 -118889329 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 2016 145 119 13 chr12 25393499 25393886 -118888603 - MSTA LTR MaLR 0 428 1 1729 157 32 32 chr12 25394018 25394145 -118888344 + AluJb SINE Alu 1 127 -185 252 0 0 0 chr12 25394145 25394173 -118888316 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1729 157 32 32 chr12 25394173 25394357 -118888132 + AluJb SINE Alu 126 312 0 279 306 31 31 chr12 25395655 25395753 -118886736 + L2 LINE L2 3175 3272 0 223 250 0 0 chr12 25397795 25397839 -118884650 + MIR3 SINE MIR 116 159 -49 686 295 26 34 chr12 25398229 25398463 -118884026 + MIR SINE MIR 12 243 -19 765 236 55 0 chr12 25398795 25398960 -118883529 - MER5A DNA MER1_type -14 175 2 238 217 170 47 chr12 25400020 25400126 -118882363 + L2 LINE L2 3150 3268 -4 1655 127 8 6 chr12 25400381 25400702 -118881787 + MER1B DNA MER1_type 59 339 0 203 179 0 0 chr12 25402554 25402593 -118879896 + A-rich Low_complexity Low_complexity 1 39 0 5935 98 13 6 chr12 25407475 25408385 -118874104 + L1MA1 LINE L1 5386 6302 0 216 0 0 0 chr12 25408608 25408632 -118873857 + (A)n Simple_repeat Simple_repeat 1 24 0 2402 87 3 0 chr12 25408656 25408956 -118873533 + AluSp SINE Alu 1 301 -12 2041 157 48 43 chr12 25409494 25409915 -118872574 + MLT2C2 LTR ERVL 2 424 -40 435 208 28 47 chr12 25412055 25412161 -118870328 + MER5A DNA MER1_type 9 112 -77 862 119 13 46 chr12 25412194 25412272 -118870217 - FAM SINE Alu -153 168 96 2463 135 3 3 chr12 25412272 25412636 -118869853 + THE1B LTR MaLR 1 364 0 862 119 13 46 chr12 25412636 25412708 -118869781 - FAM SINE Alu -225 96 23 2397 108 0 0 chr12 25412816 25413121 -118869368 + AluSg SINE Alu 1 305 -5 356 200 9 73 chr12 25413678 25413788 -118868701 - MER52A LTR ERV1 0 1755 1653 975 216 18 108 chr12 25413828 25414449 -118868040 - MER52A LTR ERV1 -140 894 283 211 288 55 14 chr12 25414587 25414660 -118867829 - L3b LINE CR1 -70 1513 1438 1714 164 68 4 chr12 25414747 25415028 -118867461 + AluJo SINE Alu 14 312 0 27 0 0 0 chr12 25415028 25415055 -118867434 + AT_rich Low_complexity Low_complexity 1 27 0 2075 112 28 3 chr12 25415441 25415728 -118866761 + AluSc SINE Alu 1 294 -15 1178 171 9 36 chr12 25415765 25415987 -118866502 - AluJb SINE Alu -10 302 87 242 208 21 0 chr12 25416198 25416246 -118866243 + L3b LINE CR1 1522 1570 -13 771 318 120 21 chr12 25417102 25417536 -118864953 + L2 LINE L2 2820 3296 -17 189 171 0 0 chr12 25417543 25417578 -118864911 + A-rich Low_complexity Low_complexity 1 35 0 819 148 8 0 chr12 25417610 25417732 -118864757 - AluJb SINE Alu -181 131 9 640 168 40 27 chr12 25417999 25418148 -118864341 - L1MD1 LINE L1 -13 6229 6079 31 26 0 0 chr12 25418243 25418281 -118864208 + AT_rich Low_complexity Low_complexity 1 38 0 854 257 67 45 chr12 25418689 25419063 -118863426 + MLT1I LTR MaLR 26 407 -2 1396 164 6 75 chr12 25420521 25420754 -118861735 - L1MC2 LINE L1 0 6344 6141 1724 53 5 0 chr12 25420754 25420961 -118861528 - AluY SINE Alu -18 293 86 1396 164 6 75 chr12 25420961 25421075 -118861414 - L1MC2 LINE L1 -203 6141 6021 371 303 181 0 chr12 25421245 25421400 -118861089 + MIR SINE MIR 80 262 0 444 176 132 38 chr12 25421443 25421602 -118860887 + L1MD2 LINE L1 6125 6298 -61 1350 166 0 22 chr12 25421602 25421825 -118860664 - AluJo SINE Alu -8 304 87 338 91 45 0 chr12 25421825 25421891 -118860598 + L1MD2 LINE L1 6288 6356 -3 516 32 0 0 chr12 25423975 25424037 -118858452 + (CA)n Simple_repeat Simple_repeat 2 63 0 35 54 0 0 chr12 25426381 25426437 -118856052 + AT_rich Low_complexity Low_complexity 1 56 0 2425 73 0 7 chr12 25426870 25427173 -118855316 + AluSq SINE Alu 1 301 -12 914 185 0 22 chr12 25427729 25427907 -118854582 + FAM SINE Alu 1 174 -1 240 250 0 29 chr12 25428798 25428866 -118853623 + LTR33A LTR ERVL 452 517 -6 386 306 134 25 chr12 25429295 25429690 -118852799 - LTR16A LTR ERVL -10 440 3 415 286 17 17 chr12 25430113 25430232 -118852257 - MIR SINE MIR -108 154 36 537 286 56 0 chr12 25430292 25430453 -118852036 - MIR SINE MIR -73 189 20 25 0 0 0 chr12 25430525 25430550 -118851939 + AT_rich Low_complexity Low_complexity 1 25 0 288 371 0 8 chr12 25430780 25430904 -118851585 + MER5B DNA MER1_type 7 129 -49 1137 147 0 37 chr12 25431414 25431605 -118850884 - AluJb SINE Alu -5 307 124 434 377 31 9 chr12 25432201 25432424 -118850065 - MIR SINE MIR -29 233 6 289 319 111 7 chr12 25432606 25432750 -118849739 + MIR SINE MIR 98 256 -6 225 307 63 24 chr12 25432863 25432990 -118849499 + L3 LINE CR1 1445 1576 -1 858 291 99 24 chr12 25433390 25433764 -118848725 - MLT1J2 LTR MaLR -45 405 4 433 286 71 76 chr12 25433771 25433818 -118848671 - L1ME LINE L1 -391 5730 5684 2421 91 0 9 chr12 25433818 25434160 -118848329 - L1PA8A LINE L1 -1 6130 5792 433 286 71 76 chr12 25434160 25434350 -118848139 - L1ME LINE L1 -437 5684 5494 215 280 0 0 chr12 25435180 25435230 -118847259 + (TG)n Simple_repeat Simple_repeat 1 50 0 1822 175 57 95 chr12 25435566 25436091 -118846398 + MLT1D LTR MaLR 1 505 0 1432 184 24 51 chr12 25436831 25437124 -118845365 - AluJo SINE Alu -26 286 2 205 161 0 0 chr12 25439001 25439032 -118843457 + polypyrimidine Low_complexity Low_complexity 2 32 0 199 406 62 0 chr12 25439574 25439670 -118842819 + L2 LINE L2 2961 3062 -210 180 152 0 0 chr12 25440351 25440384 -118842105 + A-rich Low_complexity Low_complexity 1 33 0 315 193 18 0 chr12 25441157 25441214 -118841275 - L2 LINE L2 -4 3309 3252 2254 110 30 36 chr12 25441227 25441592 -118840897 + THE1B LTR MaLR 1 363 -1 1437 188 30 30 chr12 25441593 25441843 -118840646 + MER2 DNA MER2_type 10 262 -83 921 145 0 36 chr12 25441843 25442009 -118840480 - L1PA16 LINE L1 -1 6165 6006 1437 188 30 30 chr12 25442009 25442094 -118840395 + MER2 DNA MER2_type 261 345 0 326 200 14 14 chr12 25442096 25442166 -118840323 - L2 LINE L2 -61 3252 3183 1347 226 141 3 chr12 25442168 25442558 -118839931 - L2 LINE L2 -415 2899 2456 277 356 15 15 chr12 25442576 25442708 -118839781 - L2 LINE L2 -1484 1830 1699 310 104 0 0 chr12 25442717 25442765 -118839724 - Alu SINE Alu -8 294 247 1067 148 0 0 chr12 25442765 25442914 -118839575 - AluSq/x SINE Alu -164 149 1 660 257 18 37 chr12 25442920 25443138 -118839351 - L2 LINE L2 -1619 1695 1482 206 275 11 88 chr12 25443369 25443460 -118839029 + MIR SINE MIR 129 212 -50 722 254 116 65 chr12 25443508 25443878 -118838611 + L2 LINE L2 2923 3311 -2 302 144 11 44 chr12 25444807 25444897 -118837592 + CT-rich Low_complexity Low_complexity 2 88 0 405 270 158 26 chr12 25445394 25445546 -118836943 + L2 LINE L2 3101 3272 0 1186 164 41 0 chr12 25446805 25447049 -118835440 + L1MA8 LINE L1 6028 6281 -10 2037 131 16 41 chr12 25447663 25448024 -118834465 + AluJb SINE Alu 1 353 0 1399 110 14 10 chr12 25448215 25448424 -118834065 - AluSg/x SINE Alu -5 307 98 336 277 149 7 chr12 25448502 25448643 -118833846 - LTR16C LTR ERVL -19 472 312 353 271 127 44 chr12 25449647 25449701 -118832788 - MIR SINE MIR -10 252 204 3146 196 28 6 chr12 25449701 25450339 -118832150 + MER82 DNA MER2_type 1 652 -1 353 271 127 44 chr12 25450339 25450465 -118832024 - MIR SINE MIR -58 204 57 298 158 79 30 chr12 25450494 25450595 -118831894 - L1MC5 LINE L1 -216 7745 7640 1328 140 40 35 chr12 25450745 25450973 -118831516 + AluJo SINE Alu 34 262 -50 500 90 26 0 chr12 25450973 25451051 -118831438 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 397 250 64 21 chr12 25451926 25452066 -118830423 + L2 LINE L2 3159 3304 -9 410 251 157 27 chr12 25452642 25452865 -118829624 - LTR16A LTR ERVL -93 357 106 2282 107 0 0 chr12 25453015 25453313 -118829176 - AluSx SINE Alu -14 298 1 501 301 115 5 chr12 25453818 25454027 -118828462 + MIR SINE MIR 4 235 -27 181 302 0 0 chr12 25455271 25455314 -118827175 - L2 LINE L2 -20 3293 3251 * 188 179 0 0 chr12 25455289 25455317 -118827172 - MIR SINE MIR -32 230 203 189 0 0 0 chr12 25455657 25455678 -118826811 + (TTA)n Simple_repeat Simple_repeat 2 22 0 183 129 0 0 chr12 25456813 25456844 -118825645 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 202 273 15 45 chr12 25457400 25457466 -118825023 - L2 LINE L2 -10 3262 3199 185 319 222 0 chr12 25457574 25457709 -118824780 - L2 LINE L2 -221 3051 2887 2039 158 0 0 chr12 25457713 25458023 -118824466 - AluSx SINE Alu -2 310 1 277 350 73 17 chr12 25458954 25459131 -118823358 - MER5A DNA MER1_type -2 187 1 2033 177 7 68 chr12 25462814 25462896 -118819593 - MLT2D LTR ERVL 0 414 329 546 16 0 0 chr12 25462896 25462959 -118819530 + (TA)n Simple_repeat Simple_repeat 2 64 0 405 0 0 0 chr12 25462958 25463003 -118819486 + (GA)n Simple_repeat Simple_repeat 2 46 0 * 2033 177 7 68 chr12 25462959 25463361 -118819128 - MLT2D LTR ERVL -85 329 1 1635 310 140 52 chr12 25464086 25464783 -118817706 - L2 LINE L2 -6 3307 2673 1498 181 0 69 chr12 25464783 25465115 -118817374 + AluJb SINE Alu 1 311 0 1635 310 140 52 chr12 25465115 25465888 -118816601 - L2 LINE L2 -640 2673 1724 513 170 19 0 chr12 25467194 25467300 -118815189 - L1MB8 LINE L1 -6 6172 6065 201 314 29 0 chr12 25467913 25467983 -118814506 - MIR SINE MIR 0 262 191 192 158 0 0 chr12 25468292 25468330 -118814159 + A-rich Low_complexity Low_complexity 1 38 0 337 294 120 43 chr12 25469222 25469406 -118813083 - MIR SINE MIR 0 262 65 23 33 0 0 chr12 25469474 25469504 -118812985 + AT_rich Low_complexity Low_complexity 1 30 0 1519 252 80 10 chr12 25470145 25470633 -118811856 - L1ME3A LINE L1 0 6170 5649 21 36 0 0 chr12 25471351 25471379 -118811110 + AT_rich Low_complexity Low_complexity 1 28 0 753 83 0 0 chr12 25471386 25471507 -118810982 - AluSp/q SINE Alu 0 308 188 950 195 53 0 chr12 25471851 25472077 -118810412 - L1MA4 LINE L1 -1 6299 6062 221 242 32 32 chr12 25473076 25473138 -118809351 - L3 LINE CR1 -1 1576 1515 203 305 39 97 chr12 25473494 25473580 -118808909 + MIR SINE MIR 118 193 -69 2032 128 3 0 chr12 25473580 25473869 -118808620 - AluSx SINE Alu -1 311 22 203 305 39 97 chr12 25473869 25473936 -118808553 + MIR SINE MIR 193 262 0 411 334 50 53 chr12 25474052 25474218 -118808271 - L2 LINE L2 -8 3305 3139 1877 164 0 0 chr12 25474218 25474510 -118807979 - AluJb SINE Alu -18 294 3 411 334 50 53 chr12 25474510 25474663 -118807826 - L2 LINE L2 -174 3139 2987 23 0 0 0 chr12 25475535 25475558 -118806931 + AT_rich Low_complexity Low_complexity 1 23 0 405 292 65 7 chr12 25476222 25476376 -118806113 - MIR SINE MIR -45 217 55 189 0 0 0 chr12 25476379 25476400 -118806089 + (T)n Simple_repeat Simple_repeat 1 21 0 2175 95 26 7 chr12 25476773 25477079 -118805410 - AluSx SINE Alu 0 312 1 262 267 147 0 chr12 25478553 25478628 -118803861 + MIR3 SINE MIR 112 197 -11 285 250 70 30 chr12 25479052 25479152 -118803337 - MIR3 SINE MIR -2 206 103 225 159 0 0 chr12 25479368 25479412 -118803077 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 294 225 113 0 chr12 25479422 25479493 -118802996 + MIR SINE MIR 178 256 -6 396 0 0 0 chr12 25480620 25480664 -118801825 + (TC)n Simple_repeat Simple_repeat 1 44 0 333 0 0 0 chr12 25480663 25480700 -118801789 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 182 228 18 35 chr12 25481247 25481304 -118801185 - L2 LINE L2 0 3313 3258 1149 241 79 6 chr12 25482423 25482738 -118799751 - LTR40a LTR ERVL 0 519 182 1704 249 49 90 chr12 25482746 25483778 -118798711 - HERVL40 LTR ERVL -4442 1088 8 2196 226 27 16 chr12 25483786 25484299 -118798190 - LTR40a LTR ERVL 0 519 1 338 298 47 74 chr12 25484997 25485212 -118797277 + MIR SINE MIR 43 251 -11 261 324 71 37 chr12 25487032 25487195 -118795294 + MIR3 SINE MIR 2 175 -33 230 246 140 9 chr12 25487241 25487355 -118795134 - MER103 DNA DNA 0 166 38 751 150 0 64 chr12 25487369 25487509 -118794980 - FLAM_C SINE Alu -1 132 2 201 260 40 0 chr12 25487601 25487651 -118794838 + MIR3 SINE MIR 151 202 -6 191 195 24 0 chr12 25487786 25487827 -118794662 + MIR3 SINE MIR 167 208 0 2314 78 3 0 chr12 25487874 25488170 -118794319 - AluY SINE Alu -14 297 1 21 36 0 0 chr12 25488567 25488595 -118793894 + AT_rich Low_complexity Low_complexity 1 28 0 199 271 29 43 chr12 25489071 25489141 -118793348 + L2 LINE L2 3234 3302 -11 242 333 11 35 chr12 25489366 25489453 -118793036 - L2 LINE L2 -2 3270 3186 180 111 0 0 chr12 25489493 25489520 -118792969 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 671 303 65 57 chr12 25489520 25489887 -118792602 - L2 LINE L2 -13 3300 2931 1871 169 23 6 chr12 25489912 25490266 -118792223 - MLT1A1 LTR MaLR -5 360 1 284 228 41 81 chr12 25491975 25492098 -118790391 + MIR SINE MIR 80 197 -65 2468 110 30 3 chr12 25492129 25492492 -118789997 + THE1C LTR MaLR 3 375 0 1038 232 29 20 chr12 25493313 25493559 -118788930 - MIR SINE MIR 0 262 15 180 324 15 29 chr12 25493564 25493632 -118788857 - MIR SINE MIR -125 137 71 2514 261 98 31 chr12 25493862 25494336 -118788153 - MER69B DNA AcHobo -1327 1199 758 2186 111 71 31 chr12 25494336 25494686 -118787803 - THE1B LTR MaLR 0 364 1 2514 261 98 31 chr12 25494686 25495168 -118787321 - MER69B DNA AcHobo -1768 758 157 1500 186 24 90 chr12 25495168 25495502 -118786987 - AluJb SINE Alu 0 312 1 2514 261 98 31 chr12 25495502 25495652 -118786837 - MER69B DNA AcHobo -2369 157 18 286 382 0 0 chr12 25496186 25496288 -118786201 + L2 LINE L2 3211 3312 -1 2162 190 26 42 chr12 25496347 25496846 -118785643 - MLT1D LTR MaLR -10 495 5 249 163 0 0 chr12 25497422 25497465 -118785024 + L2 LINE L2 3267 3309 -4 236 228 0 18 chr12 25498223 25498280 -118784209 - L2 LINE L2 -2 3311 3256 2005 118 46 26 chr12 25498968 25499274 -118783215 - AluJb SINE Alu 0 312 1 244 281 0 0 chr12 25499290 25499347 -118783142 + (CA)n Simple_repeat Simple_repeat 2 58 0 287 320 0 0 chr12 25499628 25499706 -118782783 + MIR SINE MIR 44 121 -87 877 201 108 12 chr12 25502297 25502546 -118779943 + L1ME2 LINE L1 5881 6153 -11 401 91 30 0 chr12 25502676 25502742 -118779747 + CT-rich Low_complexity Low_complexity 4 71 0 240 35 0 0 chr12 25502750 25502779 -118779710 + (TTCC)n Simple_repeat Simple_repeat 2 30 0 632 305 81 42 chr12 25502809 25503070 -118779419 - LTR33 LTR ERVL -20 501 211 2376 91 7 0 chr12 25503070 25503378 -118779111 + AluSq SINE Alu 1 310 -3 632 305 81 42 chr12 25503378 25503595 -118778894 - LTR33 LTR ERVL -310 211 4 183 326 47 23 chr12 25504592 25504678 -118777811 + L2 LINE L2 3137 3224 -48 22 0 0 0 chr12 25505022 25505044 -118777445 + AT_rich Low_complexity Low_complexity 1 22 0 2245 123 7 0 chr12 25505049 25505358 -118777131 - AluSx SINE Alu -1 311 1 213 311 0 0 chr12 25505681 25505742 -118776747 - MIR SINE MIR -74 188 128 278 226 0 0 chr12 25505767 25505820 -118776669 - L2 LINE L2 -5 3267 3215 21 57 0 0 chr12 25506728 25506763 -118775726 + AT_rich Low_complexity Low_complexity 1 35 0 269 247 49 12 chr12 25506834 25506915 -118775574 - MIR SINE MIR -13 249 166 1733 304 110 35 chr12 25506958 25507053 -118775436 - L2 LINE L2 0 3313 3227 2075 130 39 0 chr12 25507053 25507337 -118775152 + AluSg SINE Alu 1 295 -15 1733 304 110 35 chr12 25507337 25508546 -118773943 - L2 LINE L2 -86 3227 1901 247 321 143 0 chr12 25508596 25508680 -118773809 - MIR SINE MIR -136 126 31 201 213 0 0 chr12 25509191 25509238 -118773251 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 381 301 35 52 chr12 25509398 25509571 -118772918 + L2 LINE L2 2124 2293 -1021 698 273 22 6 chr12 25509940 25510123 -118772366 - MIR SINE MIR -65 197 12 1290 227 108 21 chr12 25510251 25510304 -118772185 + Charlie4a DNA MER1_type 25 72 -1889 1848 157 13 0 chr12 25510304 25510604 -118771885 - 7SLRNA srpRNA srpRNA -16 304 1 1290 227 108 21 chr12 25510604 25510977 -118771512 + Charlie4a DNA MER1_type 72 488 -20 238 354 42 59 chr12 25510987 25511224 -118771265 - L3 LINE CR1 -44 1533 1301 234 324 77 33 chr12 25512945 25513127 -118769362 + L2 LINE L2 2004 2193 -1121 356 349 60 57 chr12 25513347 25513929 -118768560 - L2 LINE L2 -1578 1736 1153 1951 184 72 8 chr12 25514019 25514421 -118768068 - MSTA LTR MaLR 0 428 1 335 221 5 69 chr12 25514473 25514534 -118767955 - L1ME1 LINE L1 -22 6142 6095 2272 87 0 7 chr12 25514534 25514833 -118767656 - AluY SINE Alu -14 297 1 335 221 5 69 chr12 25514833 25514901 -118767588 - L1ME1 LINE L1 -69 6095 6024 312 296 16 16 chr12 25514895 25515020 -118767469 - L1MEc LINE L1 -4566 1830 1706 * 2338 112 0 0 chr12 25515023 25515335 -118767154 - AluSx SINE Alu 0 312 1 4657 162 33 9 chr12 25515644 25516848 -118765641 - L1MA10 LINE L1 0 6334 4963 236 240 450 0 chr12 25521960 25522089 -118760400 + MIR SINE MIR 47 233 -29 340 312 24 71 chr12 25522110 25522280 -118760209 - L2 LINE L2 0 3313 3152 499 306 68 28 chr12 25522574 25522822 -118759667 + MIR SINE MIR 2 259 -3 403 257 40 47 chr12 25523221 25523369 -118759120 + MLT1I LTR MaLR 1 147 -262 426 353 81 4 chr12 25524730 25525002 -118757487 - L2 LINE L2 -453 2861 2569 222 325 117 26 chr12 25525010 25525241 -118757248 - L2 LINE L2 -1064 2250 1999 2158 100 3 29 chr12 25525257 25525567 -118756922 + AluY SINE Alu 3 304 -7 36 0 0 0 chr12 25525623 25525659 -118756830 + AT_rich Low_complexity Low_complexity 1 36 0 1412 142 54 23 chr12 25525701 25525733 -118756756 - L1PA16 LINE L1 0 6166 6136 2018 198 54 5 chr12 25525733 25526138 -118756351 + MSTB LTR MaLR 2 426 0 1412 142 54 23 chr12 25526138 25526365 -118756124 - L1PA16 LINE L1 -30 6136 5899 475 328 165 26 chr12 25526378 25526906 -118755583 - L2 LINE L2 -1387 1927 1327 298 345 101 52 chr12 25529791 25530098 -118752391 - L2 LINE L2 0 3272 2951 328 310 139 8 chr12 25530276 25530405 -118752084 - MLT1K LTR MaLR -67 521 376 280 281 0 0 chr12 25530611 25530668 -118751821 - L2 LINE L2 -1 3312 3256 397 313 88 0 chr12 25530740 25530922 -118751567 - MER113 DNA MER1_type? 0 521 324 25 51 0 0 chr12 25530990 25531029 -118751460 + AT_rich Low_complexity Low_complexity 1 39 0 281 301 70 20 chr12 25531063 25531262 -118751227 - MER113 DNA MER1_type? -302 219 11 9173 79 3 0 chr12 25531504 25533514 -118748975 + L1PA7 LINE L1 4136 6150 -4 189 213 0 0 chr12 25537265 25537312 -118745177 + (CA)n Simple_repeat Simple_repeat 2 48 0 617 337 28 20 chr12 25537374 25537629 -118744860 - MIR SINE MIR 0 262 6 479 283 102 16 chr12 25539336 25539523 -118742966 - Charlie8 DNA MER1_type -2160 257 55 2249 113 3 0 chr12 25539531 25539833 -118742656 + AluSx SINE Alu 1 303 -9 227 327 0 0 chr12 25540071 25540123 -118742366 - L2 LINE L2 -8 3264 3213 1438 187 14 103 chr12 25540376 25540775 -118741714 + MLT1A1 LTR MaLR 1 423 -3 950 135 119 0 chr12 25540945 25541130 -118741359 - Tigger4(Zombi) DNA MER2_type -2 2729 2523 331 184 276 10 chr12 25541124 25541222 -118741267 - Tigger4(Zombi) DNA MER2_type -2607 124 1 * 276 209 42 112 chr12 25541281 25541496 -118740993 - L1ME3A LINE L1 -219 5951 5752 255 257 53 9 chr12 25541513 25541626 -118740863 - L1ME LINE L1 -361 5801 5684 484 160 0 112 chr12 25541631 25541756 -118740733 - MLT2B1 LTR ERVL 0 520 410 1366 167 12 4 chr12 25542051 25542302 -118740187 - L1M2 LINE L1 -681 5631 5379 1568 189 112 0 chr12 25542307 25542630 -118739859 - MER47A DNA MER2_type -6 360 2 2833 175 27 0 chr12 25542636 25543196 -118739293 - L1M2 LINE L1 -769 5377 4803 1093 287 83 16 chr12 25543419 25543851 -118738638 + L2 LINE L2 1397 1857 -1457 1939 250 150 18 chr12 25543890 25544374 -118738115 + L1ME LINE L1 6 425 -5645 612 27 0 0 chr12 25544374 25544448 -118738041 + (CAAAG)n Simple_repeat Simple_repeat 1 74 0 1939 250 150 18 chr12 25544448 25544735 -118737754 + L1ME LINE L1 425 879 -5191 4334 157 62 5 chr12 25544838 25545667 -118736822 + L1MA3 LINE L1 5430 6305 0 326 316 53 0 chr12 25545692 25545806 -118736683 + MIR3 SINE MIR 72 191 -17 228 67 0 0 chr12 25547135 25547165 -118735324 + (TG)n Simple_repeat Simple_repeat 1 30 0 2195 103 13 10 chr12 25547566 25547877 -118734612 - AluSq SINE Alu -1 312 1 1533 141 8 27 chr12 25547879 25548142 -118734347 - AluJb SINE Alu -22 290 33 509 189 136 18 chr12 25548425 25548594 -118733895 + MER53 DNA DNA 1 189 0 183 80 0 0 chr12 25549296 25549321 -118733168 + (CA)n Simple_repeat Simple_repeat 1 25 0 324 308 58 29 chr12 25550277 25550449 -118732040 + MER5B DNA MER1_type 1 177 -1 1043 208 193 41 chr12 25551153 25551547 -118730942 - MLT2B1 LTR ERVL -64 456 3 909 242 103 67 chr12 25551594 25551669 -118730820 - L1ME LINE L1 -528 5636 5565 2252 101 0 3 chr12 25551669 25551966 -118730523 - AluSg SINE Alu -13 297 2 909 242 103 67 chr12 25551966 25552494 -118729995 - L1ME LINE L1 -599 5565 5057 1686 158 6 35 chr12 25552494 25552805 -118729684 + AluJo SINE Alu 9 310 -2 909 242 103 67 chr12 25552805 25552820 -118729669 - L1ME LINE L1 -1107 5057 5044 5067 45 3 10 chr12 25552820 25553417 -118729072 + SVA Other Other 794 1386 0 909 242 103 67 chr12 25553417 25553827 -118728662 - L1ME LINE L1 -1120 5044 4568 1411 213 4 4 chr12 25553847 25554110 -118728379 + AluJo SINE Alu 1 263 -49 321 349 42 12 chr12 25554140 25554472 -118728017 - L1ME LINE L1 -1601 4545 4204 519 262 53 39 chr12 25554560 25554919 -118727570 - L1ME LINE L1 -2929 3217 2854 22 0 0 0 chr12 25555058 25555080 -118727409 + AT_rich Low_complexity Low_complexity 1 22 0 7421 162 11 24 chr12 25555285 25556761 -118725728 - L1 LINE L1 -1307 5799 4343 1807 237 38 40 chr12 25556741 25557719 -118724770 - L1 LINE L1 -4805 2232 6 * 3085 235 53 15 chr12 25557946 25559095 -118723394 + L1ME1 LINE L1 4968 6162 -4 2130 194 9 13 chr12 25559217 25559776 -118722713 + L1M1 LINE L1 4911 5471 -743 570 204 204 6 chr12 25560156 25560318 -118722171 - MIR SINE MIR 0 262 69 1337 190 43 23 chr12 25560318 25560692 -118721797 - MSTB2 LTR MaLR 0 457 1 240 228 88 0 chr12 25560692 25560749 -118721740 - MIR SINE MIR -189 73 12 842 285 25 63 chr12 25561113 25561510 -118720979 + LTR16B LTR ERVL 81 462 -2 2233 110 0 3 chr12 25561797 25562106 -118720383 - AluSg SINE Alu -2 308 1 1115 226 12 20 chr12 25562538 25562790 -118719699 + MIR SINE MIR 2 251 -11 202 140 20 20 chr12 25562820 25562870 -118719619 + (TA)n Simple_repeat Simple_repeat 1 50 0 186 133 0 0 chr12 25562934 25562964 -118719525 + (CA)n Simple_repeat Simple_repeat 2 31 0 632 265 50 40 chr12 25563188 25563388 -118719101 + MIR SINE MIR 49 250 -12 267 31 0 0 chr12 25564062 25564094 -118718395 + (CAA)n Simple_repeat Simple_repeat 2 33 0 373 249 90 90 chr12 25566140 25566304 -118716185 + HAL1 LINE L1 2121 2287 -220 2890 6 0 0 chr12 25566304 25566616 -118715873 - AluYb8 SINE Alu -6 312 1 373 249 90 90 chr12 25566616 25566696 -118715793 + HAL1 LINE L1 2286 2365 -142 459 308 41 0 chr12 25567139 25567285 -118715204 - MIR SINE MIR -19 243 92 622 343 100 23 chr12 25567820 25568536 -118713953 + L2 LINE L2 2538 3313 0 554 297 151 5 chr12 25569133 25569352 -118713137 + MIR SINE MIR 5 255 -7 324 148 0 0 chr12 25572909 25572970 -118709519 + (TG)n Simple_repeat Simple_repeat 2 62 0 25 0 0 0 chr12 25573166 25573191 -118709298 + GC_rich Low_complexity Low_complexity 1 25 0 194 79 0 26 chr12 25573194 25573232 -118709257 + (CGGGGG)n Simple_repeat Simple_repeat 5 41 0 444 19 0 0 chr12 25573943 25573996 -118708493 + (CA)n Simple_repeat Simple_repeat 1 53 0 344 271 60 42 chr12 25574228 25574394 -118708095 - MLT1I LTR MaLR -151 258 90 1567 196 0 0 chr12 25574767 25575033 -118707456 - AluJo SINE Alu -46 266 1 2388 51 6 25 chr12 25575057 25575372 -118707117 + AluSc SINE Alu 1 309 0 210 37 0 0 chr12 25576430 25576457 -118706032 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 28 29 0 0 chr12 25576812 25576847 -118705642 + AT_rich Low_complexity Low_complexity 1 35 0 2087 45 52 11 chr12 25577030 25577299 -118705190 + AluY SINE Alu 1 280 -31 239 0 32 0 chr12 25577307 25577338 -118705151 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 25 0 0 0 chr12 25577533 25577558 -118704931 + AT_rich Low_complexity Low_complexity 1 25 0 333 0 0 0 chr12 25577585 25577622 -118704867 + (TC)n Simple_repeat Simple_repeat 2 38 0 216 0 0 0 chr12 25577621 25577645 -118704844 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 246 32 0 0 chr12 25577644 25577675 -118704814 + (GA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr12 25577714 25577739 -118704750 + AT_rich Low_complexity Low_complexity 1 25 0 2306 56 0 69 chr12 25577878 25578197 -118704292 - AluY SINE Alu -14 297 1 3602 53 2 7 chr12 25580531 25581014 -118701475 + L1PA7 LINE L1 5686 6166 0 227 216 52 93 chr12 25581208 25581305 -118701184 + MIR SINE MIR 106 198 -64 * 368 281 74 30 chr12 25581297 25581432 -118701057 - MIR SINE MIR -6 256 116 387 315 60 0 chr12 25585483 25585499 -118696990 + MIR SINE MIR 100 114 -148 1961 137 3 43 chr12 25585499 25585821 -118696668 - AluSc SINE Alu 0 309 1 387 315 60 0 chr12 25585821 25585953 -118696536 + MIR SINE MIR 114 257 -5 1069 272 117 2 chr12 25586683 25587084 -118695405 - LTR16B LTR ERVL 0 464 18 241 268 98 0 chr12 25587237 25587319 -118695170 + MIR SINE MIR 110 199 -63 184 311 214 10 chr12 25589334 25589437 -118693052 + L2 LINE L2 3143 3266 -6 482 256 151 19 chr12 25589501 25589723 -118692766 - MIR SINE MIR -6 256 6 207 275 14 29 chr12 25589756 25589825 -118692664 + MIR SINE MIR 125 192 -70 1293 189 20 96 chr12 25589868 25590212 -118692277 - AluYb8 SINE Alu 0 318 1 485 278 16 26 chr12 25590386 25590577 -118691912 + MER5A DNA MER1_type 1 189 0 1546 308 95 63 chr12 25591191 25592247 -118690242 + L3 LINE CR1 459 1547 -30 350 354 133 0 chr12 25592252 25592478 -118690011 + MIR SINE MIR 1 256 -6 276 311 15 7 chr12 25593129 25593264 -118689225 + (TA)n Simple_repeat Simple_repeat 2 137 0 651 233 7 0 chr12 25593289 25593435 -118689054 + MER45A DNA AcHobo 12 158 -20 223 71 48 0 chr12 25593609 25593651 -118688838 + (TA)n Simple_repeat Simple_repeat 1 44 0 1833 188 0 0 chr12 25593652 25593940 -118688549 - AluJb SINE Alu -22 290 3 30 59 0 0 chr12 25593996 25594047 -118688442 + AT_rich Low_complexity Low_complexity 1 51 0 1721 135 35 19 chr12 25594163 25594475 -118688014 - MER2 DNA MER2_type 0 345 29 2216 125 0 0 chr12 25594662 25594966 -118687523 - AluY SINE Alu -7 304 1 1879 249 33 30 chr12 25596269 25597869 -118684620 - L1MCa LINE L1 -2230 4334 2550 271 174 0 0 chr12 25597871 25597917 -118684572 - MER8 DNA MER2_type 0 239 194 626 217 87 25 chr12 25597936 25598097 -118684392 + MIR SINE MIR 82 252 -10 869 85 78 0 chr12 25598309 25598438 -118684051 - MER85 DNA T2_type 0 139 1 203 59 0 29 chr12 25598669 25598703 -118683786 + (TGGGGG)n Simple_repeat Simple_repeat 4 36 0 2372 143 7 24 chr12 25599905 25600324 -118682165 + Tigger2a DNA MER2_type 23 434 0 1502 215 98 64 chr12 25600324 25600540 -118681949 - L1MCa LINE L1 -4015 2549 2342 7824 19 0 0 chr12 25600540 25602220 -118680269 - L1PA3 LINE L1 0 6155 4476 1502 215 98 64 chr12 25602220 25602893 -118679596 - L1MCa LINE L1 -4222 2342 1692 1485 218 62 25 chr12 25602902 25603302 -118679187 - MLT1C LTR MaLR 0 467 53 2439 192 37 13 chr12 25603342 25604236 -118678253 - L1MCa LINE L1 -4852 1193 570 1202 194 85 118 chr12 25604336 25604929 -118677560 - L1MCa LINE L1 -5483 562 64 796 220 11 32 chr12 25605105 25605291 -118677198 + MIR SINE MIR 75 256 -6 1216 127 52 38 chr12 25606952 25607164 -118675325 - AluJo SINE Alu -16 296 82 212 305 8 99 chr12 25607201 25607332 -118675157 + L2 LINE L2 3180 3298 -15 738 303 61 44 chr12 25607609 25607811 -118674678 + LTR16B LTR ERVL 34 231 -233 2115 137 126 8 chr12 25607811 25608192 -118674297 + MSTA LTR MaLR 1 426 -2 738 303 61 44 chr12 25608192 25608401 -118674088 + LTR16B LTR ERVL 231 452 -12 311 319 49 12 chr12 25608404 25608567 -118673922 + L2 LINE L2 2568 2736 -578 238 306 47 80 chr12 25608610 25608885 -118673604 + L2 LINE L2 2824 3089 -183 233 253 106 73 chr12 25609070 25609343 -118673146 - MLT1K LTR MaLR -123 465 184 478 313 68 43 chr12 25609565 25610035 -118672454 - MLT1J LTR MaLR -19 492 11 963 229 243 14 chr12 25610292 25610659 -118671830 - LTR40c LTR ERVL -12 453 3 2223 237 61 26 chr12 25610663 25611316 -118671173 - HERVL40 LTR ERVL -2 5528 4853 858 214 0 22 chr12 25611337 25611519 -118670970 - FRAM SINE Alu -3 173 1 1150 286 48 45 chr12 25611647 25612228 -118670261 - HERVL40 LTR ERVL -786 4744 4162 1018 201 63 17 chr12 25612236 25612475 -118670014 - LTR40c LTR ERVL -211 254 5 183 184 26 0 chr12 25612705 25612743 -118669746 + L2 LINE L2 3256 3294 -19 247 274 263 6 chr12 25612935 25613110 -118669379 - L3b LINE CR1 -251 1332 1113 225 0 0 0 chr12 25614925 25614950 -118667539 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6138 140 42 12 chr12 25615291 25616421 -118666068 - Tigger3b DNA MER2_type -66 1165 2 1018 243 83 46 chr12 25616463 25616982 -118665507 - L1MC5 LINE L1 -408 7553 7016 296 297 22 7 chr12 25617347 25617485 -118665004 - L1MEc LINE L1 -6206 190 51 799 284 13 7 chr12 25617492 25617758 -118664731 - L1MC5 LINE L1 -1093 6942 6643 707 279 18 14 chr12 25617784 25618006 -118664483 + L2 LINE L2 1815 2037 -1277 2082 292 41 27 chr12 25618006 25618589 -118663900 + L2 LINE L2 2295 2868 -445 243 0 0 0 chr12 25618589 25618616 -118663873 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2122 94 7 0 chr12 25618617 25618894 -118663595 - AluY SINE Alu -32 279 1 2082 292 41 27 chr12 25618894 25619018 -118663471 + L2 LINE L2 2867 3015 -298 294 260 10 50 chr12 25619021 25619121 -118663368 + L2 LINE L2 3120 3215 -98 393 254 173 0 chr12 25619175 25619285 -118663204 - L2 LINE L2 -12 3260 3132 322 273 73 0 chr12 25619434 25619544 -118662945 + MIR SINE MIR 68 185 -77 227 313 84 56 chr12 25620147 25620259 -118662230 - LTR16C LTR ERVL 0 491 371 1489 193 144 23 chr12 25620259 25620612 -118661877 - MSTD LTR MaLR 0 396 1 227 313 84 56 chr12 25620612 25620678 -118661811 - LTR16C LTR ERVL -120 371 308 450 354 85 5 chr12 25621146 25621358 -118661131 - L3 LINE CR1 -14 1563 1335 371 349 81 36 chr12 25621520 25621861 -118660628 + L2 LINE L2 2075 2434 -880 1090 197 57 111 chr12 25621861 25622182 -118660307 + MLT1A1 LTR MaLR 1 299 -66 2502 67 0 13 chr12 25622182 25622497 -118659992 - AluY SINE Alu 0 311 1 1090 197 57 111 chr12 25622497 25622561 -118659928 + MLT1A1 LTR MaLR 299 365 0 371 349 81 36 chr12 25622561 25622577 -118659912 + L2 LINE L2 2434 2448 -866 21662 146 29 27 chr12 25622743 25626048 -118656441 + L1MA2 LINE L1 16 3312 -4412 203 79 26 0 chr12 25626048 25626086 -118656403 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 21662 146 29 27 chr12 25626086 25627135 -118655354 + L1MA2 LINE L1 3312 4357 -3367 2033 98 6 80 chr12 25627135 25627471 -118655018 + AluSq SINE Alu 1 311 -2 21662 146 29 27 chr12 25627471 25630332 -118652157 + L1MA2 LINE L1 4357 7249 -475 15328 123 25 35 chr12 25630366 25633025 -118649464 + L1PA12 LINE L1 1148 4611 -2973 6243 62 20 0 chr12 25633001 25633811 -118648678 + L1PA7 LINE L1 6766 7591 -1 * 3307 89 0 24 chr12 25633811 25634305 -118648184 + L1MA2 LINE L1 7233 7723 0 22 35 0 0 chr12 25634305 25634334 -118648155 + AT_rich Low_complexity Low_complexity 1 29 0 254 312 32 24 chr12 25634423 25634548 -118647941 + L2 LINE L2 212 337 -2977 1705 215 35 19 chr12 25634779 25635044 -118647445 - MER82 DNA MER2_type 0 653 379 207 0 0 0 chr12 25635044 25635067 -118647422 + (TG)n Simple_repeat Simple_repeat 2 24 0 1705 215 35 19 chr12 25635067 25635177 -118647312 - MER82 DNA MER2_type -274 379 272 738 189 0 0 chr12 25635172 25635294 -118647195 + Tigger3b DNA MER2_type 1110 1231 0 * 226 293 67 133 chr12 25635321 25635666 -118646823 + L2 LINE L2 2914 3235 -37 249 33 0 0 chr12 25635711 25635741 -118646748 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 435 301 36 87 chr12 25635781 25636113 -118646376 - L3 LINE CR1 -359 1218 904 519 335 74 4 chr12 25636282 25636512 -118645977 + MIR SINE MIR 5 250 -12 1520 156 68 4 chr12 25636640 25636935 -118645554 + AluSg SINE Alu 1 312 0 1383 178 8 0 chr12 25637374 25637610 -118644879 - L1PB4 LINE L1 -7 6149 5912 209 139 23 23 chr12 25637663 25637706 -118644783 + CT-rich Low_complexity Low_complexity 5 47 0 238 369 70 56 chr12 25637770 25638125 -118644364 - L3 LINE CR1 -1217 360 1 228 35 0 0 chr12 25638918 25638947 -118643542 + (GA)n Simple_repeat Simple_repeat 1 29 0 210 118 0 0 chr12 25639089 25639123 -118643366 + (TG)n Simple_repeat Simple_repeat 2 35 0 228 163 23 0 chr12 25639349 25639392 -118643097 + L2 LINE L2 3269 3312 -1 495 0 0 0 chr12 25640353 25640408 -118642081 + (TG)n Simple_repeat Simple_repeat 2 56 0 1988 115 14 0 chr12 25640408 25640686 -118641803 - AluSc SINE Alu -27 282 1 590 181 0 43 chr12 25641638 25641826 -118640663 + CT-rich Low_complexity Low_complexity 1 180 0 24 32 0 0 chr12 25642405 25642436 -118640053 + AT_rich Low_complexity Low_complexity 1 31 0 435 335 63 11 chr12 25643200 25643391 -118639098 + MLT1J LTR MaLR 4 204 -307 305 241 69 0 chr12 25643422 25643509 -118638980 + MLT1J LTR MaLR 415 507 -4 191 196 250 0 chr12 25644260 25644316 -118638173 - MER5A DNA MER1_type -6 183 114 675 310 29 8 chr12 25644875 25645117 -118637372 + MIR SINE MIR 16 262 0 410 317 65 57 chr12 25648131 25648670 -118633819 - L1MC4a LINE L1 -154 5967 5399 231 287 86 57 chr12 25649099 25649308 -118633181 - L1MC4a LINE L1 -1302 4844 4630 403 81 0 0 chr12 25649541 25649603 -118632886 + L1MA1 LINE L1 6241 6302 0 248 287 35 0 chr12 25650128 25650215 -118632274 + (CATATA)n Simple_repeat Simple_repeat 4 93 0 2641 229 27 7 chr12 25652299 25653011 -118629478 + L1MC1 LINE L1 4143 4868 -1278 5499 147 45 0 chr12 25653122 25654246 -118628243 + L1MC1 LINE L1 5122 6333 0 1940 94 4 0 chr12 25654421 25654675 -118627814 - AluSg SINE Alu -12 298 44 190 314 86 48 chr12 25654698 25654803 -118627686 - MIR SINE MIR -67 141 33 24 0 0 0 chr12 25656276 25656300 -118626189 + AT_rich Low_complexity Low_complexity 1 24 0 13481 137 19 20 chr12 25656509 25658753 -118623736 + L1PA6 LINE L1 11 2252 -3894 22060 63 11 0 chr12 25658753 25662440 -118620049 + L1PA6 LINE L1 2463 6167 0 214 200 0 0 chr12 25664208 25664248 -118618241 + A-rich Low_complexity Low_complexity 1 40 0 662 138 0 0 chr12 25865762 25865856 -118416633 + AluSg/x SINE Alu 204 297 -13 1852 156 0 7 chr12 25865863 25866152 -118416337 + AluSx SINE Alu 1 287 -25 297 264 90 35 chr12 25866870 25867014 -118415475 + L3b LINE CR1 1102 1253 -330 2251 122 0 0 chr12 25867052 25867356 -118415133 + AluSx SINE Alu 1 304 -8 2300 119 0 0 chr12 25868281 25868583 -118413906 + AluSg SINE Alu 1 302 -8 375 161 0 92 chr12 25868615 25868702 -118413787 - AluJb SINE Alu -171 131 53 1484 69 19 5 chr12 25868702 25868918 -118413571 - pTR5 LTR ERV1 -2048 390 172 299 245 10 0 chr12 25868921 25869019 -118413470 - LTR30 LTR ERV1 -80 642 544 4020 122 65 83 chr12 25869023 25870027 -118412462 - pTR5 LTR ERV1 -417 2021 745 294 259 0 0 chr12 25870028 25870086 -118412403 - AluJb SINE Alu -244 58 1 307 286 58 18 chr12 25870376 25870547 -118411942 - LTR67 LTR ERVL -7 550 373 21 0 0 0 chr12 25871071 25871092 -118411397 + AT_rich Low_complexity Low_complexity 1 21 0 296 289 117 8 chr12 25872239 25872367 -118410122 - MIR SINE MIR -1 261 120 197 139 23 0 chr12 25872429 25872472 -118410017 + (TG)n Simple_repeat Simple_repeat 1 44 0 1166 155 130 8 chr12 25872782 25873053 -118409436 - L1ME1 LINE L1 -9 6157 5858 1064 198 18 0 chr12 25873778 25874000 -118408489 - L1MB7 LINE L1 0 6184 5959 23 0 0 0 chr12 25874103 25874126 -118408363 + AT_rich Low_complexity Low_complexity 1 23 0 2366 43 0 27 chr12 25874663 25874964 -118407525 + AluY SINE Alu 19 311 0 1367 225 111 53 chr12 25875158 25875670 -118406819 - MLT1F LTR MaLR 0 542 1 564 234 48 8 chr12 25875703 25875827 -118406662 - FLAM_C SINE Alu -13 130 2 2155 106 14 0 chr12 25875833 25876125 -118406364 - AluSq SINE Alu -17 296 1 31 76 0 0 chr12 25876156 25876222 -118406267 + AT_rich Low_complexity Low_complexity 1 66 0 731 130 0 0 chr12 25876537 25876637 -118405852 + AluJ/FLAM SINE Alu 1 100 -212 5570 227 48 60 chr12 25876778 25878407 -118404082 + L1MD1 LINE L1 2946 4593 -1553 716 186 0 0 chr12 25878407 25878525 -118403964 - FLAM_C SINE Alu -15 118 1 5570 227 48 60 chr12 25878525 25878572 -118403917 + L1MD1 LINE L1 4593 4639 -1507 2127 132 3 0 chr12 25878572 25878867 -118403622 - AluSx SINE Alu -16 296 1 5570 227 48 60 chr12 25878867 25879216 -118403273 + L1MD1 LINE L1 4639 4948 -1198 225 200 0 0 chr12 25879216 25879261 -118403228 + A-rich Low_complexity Low_complexity 1 45 0 2220 72 0 69 chr12 25879278 25879597 -118402892 - AluY SINE Alu -14 297 1 982 226 7 7 chr12 25879599 25879873 -118402616 + L1MD1 LINE L1 4961 5234 -912 2492 164 35 15 chr12 25879875 25880395 -118402094 + L1MD1 LINE L1 5417 5946 -296 328 125 0 0 chr12 25880398 25880446 -118402043 - MER8 DNA MER2_type 0 239 192 611 67 11 0 chr12 25880887 25880977 -118401512 - L1PB2 LINE L1 -2 6149 6059 1147 162 113 11 chr12 25880978 25881244 -118401245 - L1MD1 LINE L1 0 6242 5950 658 176 110 0 chr12 25881249 25881385 -118401104 - Tigger2 DNA MER2_type -4 2714 2564 1789 167 94 25 chr12 25881569 25882006 -118400483 + MLT1C LTR MaLR 1 467 0 219 140 0 0 chr12 25882598 25882648 -118399841 + (A)n Simple_repeat Simple_repeat 1 50 0 2077 128 7 7 chr12 25882817 25883121 -118399368 + AluSx SINE Alu 6 309 -3 2141 87 35 3 chr12 25883131 25883418 -118399071 + AluSg SINE Alu 1 296 -14 401 334 51 80 chr12 25884950 25885552 -118396937 - L2 LINE L2 -28 3244 2667 743 310 53 59 chr12 25885643 25885979 -118396510 + MLT1K LTR MaLR 102 436 -152 1684 162 40 14 chr12 25885979 25886275 -118396214 + AluJb SINE Alu 1 304 -8 743 310 53 59 chr12 25886275 25886412 -118396077 + MLT1K LTR MaLR 436 572 -16 287 283 28 9 chr12 25886426 25886532 -118395957 - L2 LINE L2 -654 2660 2553 2100 90 0 4 chr12 25886646 25886913 -118395576 - AluSq SINE Alu -47 266 1 2644 216 69 41 chr12 25887102 25887492 -118394997 - L1ME1 LINE L1 -5 6161 5783 2270 94 0 3 chr12 25887492 25887791 -118394698 - AluY SINE Alu -13 298 1 2644 216 69 41 chr12 25887791 25888225 -118394264 - L1ME1 LINE L1 -383 5783 5314 2270 151 36 7 chr12 25888227 25888638 -118393851 - L1MA5 LINE L1 -5 6295 5873 2292 202 75 31 chr12 25888660 25889337 -118393152 - L1MD2 LINE L1 -15 6344 5638 4466 217 44 32 chr12 25889341 25890216 -118392273 - L1ME1 LINE L1 -831 5315 4417 1565 146 40 80 chr12 25890216 25890539 -118391950 - AluSx SINE Alu 0 312 1 4466 217 44 32 chr12 25890539 25891011 -118391478 - L1ME1 LINE L1 -1729 4417 3952 567 188 7 13 chr12 25891011 25891160 -118391329 + CT-rich Low_complexity Low_complexity 3 150 0 298 261 80 0 chr12 25891276 25891364 -118391125 - L1MC/D LINE L1 -2035 5773 5679 494 335 21 38 chr12 25891414 25891653 -118390836 + L3 LINE CR1 1307 1541 -36 2503 196 62 9 chr12 25892589 25893167 -118389322 - L1MD3 LINE L1 -5 7990 7382 242 190 52 0 chr12 25893178 25893236 -118389253 - MLT2B1 LTR ERVL 0 520 460 365 248 25 6 chr12 25893239 25893400 -118389089 + (TATATG)n Simple_repeat Simple_repeat 3 166 0 1469 223 74 28 chr12 25893408 25893865 -118388624 - MLT2B1 LTR ERVL -42 478 1 391 247 10 0 chr12 25893878 25893975 -118388514 - L1MC3 LINE L1 -643 7142 7045 201 372 91 16 chr12 25894201 25894322 -118388167 - L2 LINE L2 -10 3262 3133 251 211 55 128 chr12 25894338 25894447 -118388042 + MIR SINE MIR 66 166 -96 1926 117 0 0 chr12 25894565 25894830 -118387659 - AluSq SINE Alu -48 265 1 258 327 115 0 chr12 25895786 25895890 -118386599 - MIR SINE MIR -26 236 121 2154 110 3 23 chr12 25895893 25896203 -118386286 + AluSx SINE Alu 1 304 -8 264 329 73 36 chr12 25896223 25896360 -118386129 + L2 LINE L2 3112 3253 -19 21 0 0 0 chr12 25896617 25896638 -118385851 + AT_rich Low_complexity Low_complexity 1 21 0 367 282 0 0 chr12 25896885 25896988 -118385501 - MER117 DNA MER1_type -43 154 52 1782 126 51 0 chr12 25897139 25897394 -118385095 + AluSx SINE Alu 1 268 -44 26 0 0 0 chr12 25897396 25897422 -118385067 + AT_rich Low_complexity Low_complexity 1 26 0 2053 90 58 0 chr12 25897422 25897699 -118384790 + AluSg SINE Alu 1 293 -17 5454 159 37 18 chr12 25897868 25898886 -118383603 + L1PA16 LINE L1 4119 5172 -994 2309 105 0 3 chr12 25898886 25899199 -118383290 + AluSx SINE Alu 1 312 0 5454 159 37 18 chr12 25899199 25899722 -118382767 + L1PA16 LINE L1 5172 5684 -482 1893 147 65 28 chr12 25899722 25900258 -118382231 - MLT2A2 LTR ERVL 0 554 2 3062 130 8 4 chr12 25900258 25900785 -118381704 + L1PA16 LINE L1 5679 6207 0 1218 255 105 31 chr12 25900799 25901214 -118381275 + L1MC4 LINE L1 7400 7821 -174 2296 79 17 0 chr12 25901214 25901505 -118380984 + AluSx SINE Alu 3 298 -14 1218 255 105 31 chr12 25901505 25901695 -118380794 + L1MC4 LINE L1 7821 7995 0 232 275 58 0 chr12 25902065 25902134 -118380355 - MIR3 SINE MIR -9 199 127 2199 118 3 3 chr12 25902345 25902651 -118379838 - AluSx SINE Alu -6 306 1 24 32 0 0 chr12 25902704 25902735 -118379754 + AT_rich Low_complexity Low_complexity 1 31 0 1527 183 63 7 chr12 25903252 25903537 -118378952 + AluJo SINE Alu 1 301 -11 2245 94 13 3 chr12 25903538 25903836 -118378653 + AluY SINE Alu 1 301 -10 2122 87 28 10 chr12 25903895 25904183 -118378306 + AluSx SINE Alu 1 293 -19 30 45 0 0 chr12 25905365 25905409 -118377080 + AT_rich Low_complexity Low_complexity 1 44 0 832 154 0 15 chr12 25905415 25905551 -118376938 - AluJo SINE Alu -178 134 1 257 317 133 17 chr12 25905560 25905680 -118376809 - MIR SINE MIR -68 140 6 195 100 0 0 chr12 25905833 25905863 -118376626 + (CAT)n Simple_repeat Simple_repeat 1 30 0 29 0 0 0 chr12 25906279 25906308 -118376181 + AT_rich Low_complexity Low_complexity 1 29 0 1404 169 112 0 chr12 25906308 25906568 -118375921 - AluJb SINE Alu -13 289 1 1528 187 47 43 chr12 25906710 25907009 -118375480 - AluJb SINE Alu -12 300 1 1539 136 0 0 chr12 25907255 25907475 -118375014 - AluSg/x SINE Alu -7 303 84 214 123 68 27 chr12 25907541 25907614 -118374875 + (TA)n Simple_repeat Simple_repeat 1 76 0 2247 81 3 14 chr12 25907665 25907962 -118374527 - AluY SINE Alu -17 294 1 657 291 72 56 chr12 25908200 25908646 -118373843 + MLT1K LTR MaLR 136 588 0 432 277 113 61 chr12 25908844 25909075 -118373414 - MLT1K LTR MaLR -158 430 188 1215 92 10 77 chr12 25909441 25909637 -118372852 + AluSg/x SINE Alu 113 295 -15 622 228 15 20 chr12 25909654 25909795 -118372694 - L1MC4 LINE L1 0 8042 7901 302 60 0 40 chr12 25909795 25909845 -118372644 + (CCTA)n Simple_repeat Simple_repeat 4 51 0 622 228 15 20 chr12 25909845 25909900 -118372589 - L1MC4 LINE L1 -141 7901 7847 2447 244 25 15 chr12 25909934 25910601 -118371888 - L1ME1 LINE L1 -18 6408 5735 1085 153 21 153 chr12 25910603 25910989 -118371500 - L1 LINE L1 -2522 3624 3290 2468 240 62 16 chr12 25911003 25911979 -118370510 - L1ME1 LINE L1 -743 5663 4726 2431 222 94 40 chr12 25911982 25912243 -118370246 - L1ME1 LINE L1 -4507 1899 1653 2272 86 0 3 chr12 25912243 25912533 -118369956 + AluSc SINE Alu 3 291 -18 2431 222 94 40 chr12 25912533 25913374 -118369115 - L1ME1 LINE L1 -4753 1653 782 2245 193 38 36 chr12 25913718 25914017 -118368472 - L1MC4 LINE L1 -172 7870 7567 2143 103 0 0 chr12 25914017 25914333 -118368156 - AluSx SINE Alu 0 317 2 2245 193 38 36 chr12 25914333 25914586 -118367903 - L1MC4 LINE L1 -475 7567 7316 600 171 26 0 chr12 25914649 25914766 -118367723 + MER3 DNA MER1_type 2 121 -88 1659 162 0 8 chr12 25914776 25915064 -118367425 + AluJo SINE Alu 32 317 0 222 91 0 0 chr12 25915152 25915185 -118367304 + (TTG)n Simple_repeat Simple_repeat 2 34 0 218 207 73 85 chr12 25915392 25915474 -118367015 - MIR SINE MIR -156 106 26 2278 101 3 0 chr12 25917684 25917982 -118364507 - AluSq SINE Alu -14 299 1 255 307 0 11 chr12 25918137 25918225 -118364264 + CT-rich Low_complexity Low_complexity 2 88 0 27 0 0 0 chr12 25919160 25919187 -118363302 + AT_rich Low_complexity Low_complexity 1 27 0 278 297 210 31 chr12 25919437 25919632 -118362857 - L3 LINE CR1 -7 1570 1341 1304 71 44 0 chr12 25919734 25919917 -118362572 + L1PA8 LINE L1 5979 6169 -3 3097 316 36 48 chr12 25920126 25921961 -118360528 - ERVL LTR ERVL -1119 4645 2833 2538 231 32 75 chr12 25921962 25922803 -118359686 + MER21B LTR ERV1 2 806 -57 553 204 30 15 chr12 25922824 25922956 -118359533 - ERVL LTR ERVL -2197 2799 2666 2154 158 72 17 chr12 25922956 25923428 -118359061 - Tigger7 DNA MER2_type -1 2486 107 595 198 0 0 chr12 25923580 25923686 -118358803 - Tigger7 DNA MER2_type -599 106 1 2185 311 52 28 chr12 25923723 25924879 -118357610 - ERVL LTR ERVL -2365 2631 1386 233 197 60 68 chr12 25924883 25924948 -118357541 - L1MCc LINE L1 -3801 3140 3075 1356 142 19 11 chr12 25924948 25925215 -118357274 - L1MA9 LINE L1 0 6312 6044 233 197 60 68 chr12 25925215 25925266 -118357223 - L1MCc LINE L1 -3866 3075 3025 363 133 17 0 chr12 25925287 25925347 -118357142 - Tigger5 DNA MER2_type -19 2304 2244 302 257 0 0 chr12 25925339 25925409 -118357080 + Tigger5 DNA MER2_type 2242 2311 -12 * 389 225 0 0 chr12 25925407 25925487 -118357002 - Tigger5 DNA MER2_type -2242 81 2 334 222 76 38 chr12 25925510 25925695 -118356794 - L1MCc LINE L1 -4086 3036 2845 790 287 100 10 chr12 25925720 25926213 -118356276 - L1MCc LINE L1 -4550 2468 1849 5727 149 11 38 chr12 25926285 25928029 -118354460 - L1PB3 LINE L1 -1 6153 4429 296 104 0 0 chr12 25928029 25928077 -118354412 + MADE1 DNA Mariner 33 80 0 5727 149 11 38 chr12 25928077 25928375 -118354114 - L1PB3 LINE L1 -1725 4429 4125 301 370 52 35 chr12 25928376 25928549 -118353940 - L1MCc LINE L1 -5082 1861 1686 391 294 38 21 chr12 25928577 25928953 -118353536 - L1MCc LINE L1 -4892 1531 1181 198 103 0 0 chr12 25929392 25929421 -118353068 + (T)n Simple_repeat Simple_repeat 1 29 0 366 224 208 0 chr12 25929773 25929898 -118352591 - MER103 DNA DNA -7 159 9 340 289 0 10 chr12 25930946 25931043 -118351446 - L1MC5 LINE L1 -76 7885 7790 2307 87 0 3 chr12 25931104 25931402 -118351087 + AluY SINE Alu 1 297 -14 5146 167 64 31 chr12 25931438 25932582 -118349907 - L1MC3 LINE L1 -8 7777 6596 2149 94 10 0 chr12 25932576 25932883 -118349606 + THE1A-int LTR MaLR 1271 1580 0 * 2365 118 8 8 chr12 25932883 25933238 -118349251 + THE1A LTR MaLR 1 355 0 668 93 26 130 chr12 25933239 25933415 -118349074 + L1P LINE L1 5236 5393 -755 * 5292 91 33 7 chr12 25933405 25934223 -118348266 + L1PA13 LINE L1 5323 6161 -2 506 241 80 5 chr12 25934219 25934418 -118348071 - L1MC5 LINE L1 -785 7176 6963 * 1670 57 33 0 chr12 25934428 25934640 -118347849 - AluY SINE Alu 0 311 93 230 203 0 85 chr12 25934647 25934706 -118347783 + LTR33A LTR ERVL 467 520 -3 1005 269 79 51 chr12 25934729 25935757 -118346732 + L1PA16 LINE L1 10 2080 -5501 359 277 139 59 chr12 25935895 25936133 -118346356 + L1M2 LINE L1 796 1052 -5797 732 203 0 86 chr12 25936427 25936649 -118345840 - L1PA16 LINE L1 -2581 5003 4801 8216 164 18 10 chr12 25936651 25936792 -118345697 + L1PA16 LINE L1 5004 5142 -2462 1903 117 78 0 chr12 25936792 25937073 -118345416 - AluSq SINE Alu -10 303 1 8216 164 18 10 chr12 25937073 25939519 -118342970 + L1PA16 LINE L1 5142 7603 -1 461 299 85 41 chr12 25939750 25940128 -118342361 - L1MC4a LINE L1 -252 5912 5662 216 252 149 47 chr12 25940903 25941010 -118341479 + L2 LINE L2 2936 3053 -219 895 258 32 16 chr12 25941271 25941523 -118340966 - MIR SINE MIR -2 260 5 853 69 35 0 chr12 25942900 25943016 -118339473 + L1PA16 LINE L1 6038 6157 -9 22 0 0 0 chr12 25943074 25943096 -118339393 + AT_rich Low_complexity Low_complexity 1 22 0 287 203 39 88 chr12 25943306 25943488 -118339001 - L1ME4a LINE L1 -14 6107 5935 453 296 74 22 chr12 25943556 25943786 -118338703 - L1ME4a LINE L1 -146 5975 5734 862 273 52 13 chr12 25944054 25944285 -118338204 - MIR SINE MIR -21 241 2 409 284 9 0 chr12 25944306 25944422 -118338067 + MER117 DNA MER1_type 9 125 -72 427 286 44 30 chr12 25944744 25944944 -118337545 + MIR SINE MIR 15 212 -50 359 200 0 0 chr12 25945317 25945402 -118337087 - L1MEc LINE L1 -5238 1158 1074 879 258 76 89 chr12 25945402 25945952 -118336537 + MER68 LTR ERV1 1 543 -19 2551 234 72 64 chr12 25945978 25946031 -118336458 - L1MEc LINE L1 -5344 1052 1001 2036 125 10 0 chr12 25946031 25946326 -118336163 + AluSx SINE Alu 1 298 -14 2551 234 72 64 chr12 25946326 25947282 -118335207 - L1MEc LINE L1 -5395 1001 35 25 0 0 0 chr12 25947301 25947326 -118335163 + AT_rich Low_complexity Low_complexity 1 25 0 7179 30 1 0 chr12 25947348 25948240 -118334249 - L1PA4 LINE L1 0 6155 5263 2224 33 0 0 chr12 25948236 25948512 -118333977 - L1PA4 LINE L1 -1319 4827 4552 * 230 323 0 0 chr12 25948563 25948625 -118333864 + L2 LINE L2 3246 3307 -6 2762 181 34 2 chr12 25949291 25949793 -118332696 + LTR53 LTR ERVL 1 518 -1 33 66 0 0 chr12 25950434 25950495 -118331994 + AT_rich Low_complexity Low_complexity 1 61 0 268 253 13 40 chr12 25950763 25950838 -118331651 - MIR SINE MIR -31 231 159 416 290 65 7 chr12 25950853 25950991 -118331498 + MIR SINE MIR 99 244 -18 729 217 189 0 chr12 25951230 25951442 -118331047 + MIR SINE MIR 7 258 -4 621 232 39 32 chr12 25951569 25951724 -118330765 - MIR SINE MIR -21 241 86 1264 124 0 69 chr12 25952986 25953203 -118329286 - AluJo SINE Alu -106 206 5 535 248 24 0 chr12 25953319 25953444 -118329045 - L1ME3A LINE L1 -9 6161 6034 368 268 162 14 chr12 25953997 25954139 -118328350 - MER5A DNA MER1_type -3 186 24 942 192 21 1 chr12 25955242 25955594 -118326895 - MSTD LTR MaLR 0 396 1 1492 186 50 7 chr12 25955705 25955984 -118326505 - AluJb SINE Alu -21 291 1 569 278 99 14 chr12 25955993 25956428 -118326061 - L1ME3A LINE L1 -6 6164 5697 26 50 0 0 chr12 25956434 25956474 -118326015 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr12 25956560 25956590 -118325899 + AT_rich Low_complexity Low_complexity 1 30 0 1999 75 86 25 chr12 25956837 25957116 -118325373 - AluSq SINE Alu -17 296 1 550 285 101 74 chr12 25957319 25957645 -118324844 - MLT1J LTR MaLR -44 467 133 24 0 0 0 chr12 25958057 25958081 -118324408 + AT_rich Low_complexity Low_complexity 1 24 0 542 271 42 57 chr12 25959018 25959210 -118323279 - MIR SINE MIR -15 247 59 184 344 0 16 chr12 25959194 25959255 -118323234 + MIR3 SINE MIR 132 191 -17 * 222 323 0 0 chr12 25959829 25959891 -118322598 + GA-rich Low_complexity Low_complexity 2 63 0 979 82 0 0 chr12 25960166 25960301 -118322188 - HERVL LTR ERVL -428 5226 5092 2748 61 24 16 chr12 25960364 25960741 -118321748 - MLT2A1 LTR ERVL -64 380 1 2026 33 17 43 chr12 25960741 25961041 -118321448 - HERVL-A1 LTR ERVL 0 5654 5363 2119 101 3 7 chr12 25961041 25961327 -118321162 + AluSq SINE Alu 11 295 -18 10177 72 3 5 chr12 25961327 25962669 -118319820 - HERVL LTR ERVL -350 5304 3965 506 238 49 8 chr12 25962722 25962844 -118319645 + MER91B DNA MER1_type 4 130 -60 307 212 61 81 chr12 25962859 25962958 -118319531 + MER91B DNA MER1_type 93 189 -1 856 265 118 43 chr12 25963502 25963966 -118318523 + L2 LINE L2 2804 3302 -11 378 0 0 0 chr12 25964395 25964437 -118318052 + (CA)n Simple_repeat Simple_repeat 1 42 0 1949 137 11 0 chr12 25965672 25965956 -118316533 + AluJo SINE Alu 1 287 -25 2226 120 0 3 chr12 25966019 25966320 -118316169 + AluSx SINE Alu 1 300 -12 876 150 0 0 chr12 25966795 25966928 -118315561 - FLAM_C SINE Alu 0 133 1 14366 22 1 0 chr12 25967035 25969487 -118313002 - L1PA2 LINE L1 -2 6153 3700 * 21099 45 51 3 chr12 25969484 25972183 -118310306 - L1PA2 LINE L1 -3316 2830 2 369 294 20 0 chr12 25973365 25973467 -118309022 - MER5A DNA MER1_type -83 106 3 664 279 60 17 chr12 25976273 25976581 -118305908 + MLT1G1 LTR MaLR 68 358 -184 1223 180 20 46 chr12 25977211 25977516 -118304973 - L1MA9 LINE L1 -5 6307 6011 336 48 0 0 chr12 25977771 25977813 -118304676 + (TG)n Simple_repeat Simple_repeat 2 43 0 2149 161 45 16 chr12 25979258 25979705 -118302784 - L1MB4 LINE L1 -37 6143 5684 1586 159 74 21 chr12 25979705 25980031 -118302458 + MER61A LTR ERV1 1 343 0 2190 109 0 0 chr12 25980046 25980339 -118302150 + AluSx SINE Alu 2 294 -18 23 0 0 0 chr12 25980362 25980385 -118302104 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 25980789 25980811 -118301678 + AT_rich Low_complexity Low_complexity 1 22 0 1610 162 67 7 chr12 25981600 25981884 -118300605 - AluJo SINE Alu -11 301 1 2003 150 0 3 chr12 25983513 25983820 -118298669 - AluSx SINE Alu -6 306 1 535 255 56 37 chr12 25984049 25984210 -118298279 + MIR SINE MIR 7 170 -92 207 397 140 0 chr12 25985055 25985191 -118297298 + MIR3 SINE MIR 40 194 -14 26 0 0 0 chr12 25986333 25986359 -118296130 + AT_rich Low_complexity Low_complexity 1 26 0 357 260 184 20 chr12 25989294 25989408 -118293081 - L1MC4 LINE L1 0 8042 7948 2107 119 14 0 chr12 25989408 25989703 -118292786 - AluSq SINE Alu -12 301 3 357 260 184 20 chr12 25989703 25989892 -118292597 - L1MC4 LINE L1 -94 7948 7689 485 286 258 13 chr12 25989986 25990304 -118292185 - MLT1J LTR MaLR -38 473 78 1601 272 41 39 chr12 25990663 25991226 -118291263 - L1ME3A LINE L1 -12 6227 5664 728 219 172 47 chr12 25991215 25991558 -118290931 - L1ME3A LINE L1 -1982 4233 3848 * 304 198 37 0 chr12 25991558 25991639 -118290850 + L1M4 LINE L1 2878 2961 -3185 2414 78 0 0 chr12 25991642 25991937 -118290552 - AluSq SINE Alu -18 295 1 1602 226 46 22 chr12 25992103 25992559 -118289930 + MLT1C LTR MaLR 1 467 0 492 326 67 19 chr12 25992634 25992904 -118289585 - L1ME3A LINE L1 -4579 1817 1535 537 270 14 19 chr12 25992906 25993121 -118289368 - L1ME3A LINE L1 -4959 1437 1224 212 274 0 27 chr12 25993128 25993201 -118289288 + CT-rich Low_complexity Low_complexity 4 74 0 398 344 121 39 chr12 25993323 25993818 -118288671 - L2 LINE L2 -6 3266 2725 405 339 81 19 chr12 25993841 25994101 -118288388 - L2 LINE L2 -810 2504 2229 330 334 85 47 chr12 25994208 25994523 -118287966 + L2 LINE L2 2730 3050 -222 469 305 58 0 chr12 25994551 25994725 -118287764 - MER112 DNA MER1_type 0 260 77 21 0 0 0 chr12 25994948 25994969 -118287520 + AT_rich Low_complexity Low_complexity 1 21 0 745 287 124 55 chr12 25995714 25995894 -118286595 + L1 LINE L1 4050 4216 -1930 1672 176 40 0 chr12 25995894 25996199 -118286290 + AluSx SINE Alu 1 316 0 745 287 124 55 chr12 25996199 25996759 -118285730 + L1 LINE L1 4216 4842 -1304 304 220 66 11 chr12 25996808 25996899 -118285590 + L1 LINE L1 4912 5007 -1139 2170 83 9 23 chr12 25996910 25997246 -118285243 + L1MA1 LINE L1 5871 6202 -100 22 80 0 0 chr12 25997248 25997298 -118285191 + AT_rich Low_complexity Low_complexity 1 50 0 413 330 42 11 chr12 25997326 25997587 -118284902 + L1MC4a LINE L1 5376 5644 -2164 37 39 0 0 chr12 25997712 25997763 -118284726 + AT_rich Low_complexity Low_complexity 1 51 0 315 346 78 25 chr12 25997787 25998030 -118284459 + L1MC4a LINE L1 5748 6003 -1805 195 214 36 36 chr12 25999156 25999212 -118283277 - MIR3 SINE MIR -41 167 112 2211 23 0 0 chr12 25999245 25999617 -118282872 + L1P1 LINE L1 5151 5522 -633 1213 48 0 0 chr12 25999617 25999785 -118282704 + L1PA3 LINE L1 5993 6162 0 188 200 71 129 chr12 26000600 26000685 -118281804 - L2 LINE L2 0 3313 3234 2428 66 0 7 chr12 26001352 26001657 -118280832 + AluY SINE Alu 1 303 -8 4489 181 54 20 chr12 26002152 26002188 -118280301 - L1MA9 LINE L1 -40 6272 6239 297 0 0 0 chr12 26002188 26002221 -118280268 + (TA)n Simple_repeat Simple_repeat 2 34 0 4489 181 54 20 chr12 26002221 26003456 -118279033 - L1MA9 LINE L1 -73 6239 4960 189 372 22 44 chr12 26003547 26003684 -118278805 + MIR SINE MIR 47 180 -82 306 330 31 10 chr12 26004519 26004616 -118277873 + MIR SINE MIR 32 130 -78 2323 89 7 0 chr12 26005072 26005375 -118277114 - AluSg SINE Alu -5 305 1 314 312 23 50 chr12 26005882 26006103 -118276386 - L2 LINE L2 -249 3023 2809 244 362 49 56 chr12 26006122 26006409 -118276080 + L2 LINE L2 2988 3272 0 237 293 98 0 chr12 26006568 26006650 -118275839 + L2 LINE L2 3192 3281 -32 275 267 147 17 chr12 26007383 26007499 -118274990 + L2 LINE L2 3183 3313 0 475 168 17 10 chr12 26007792 26007912 -118274577 + L1MB1 LINE L1 5729 5850 -339 239 137 20 0 chr12 26007912 26007963 -118274526 + L1PB1 LINE L1 6097 6148 -3 270 0 0 0 chr12 26009685 26009715 -118272774 + (TA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr12 26009714 26009740 -118272749 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 263 293 0 0 chr12 26009740 26009822 -118272667 - L1MC4 LINE L1 -1347 6695 6614 864 233 84 13 chr12 26009827 26010136 -118272353 + MER46C DNA MER2_type 5 335 -3 522 219 44 0 chr12 26010239 26010353 -118272136 - MIR SINE MIR -62 200 82 544 340 167 25 chr12 26010587 26011907 -118270582 + L2 LINE L2 1344 2850 -464 340 281 77 18 chr12 26012002 26012234 -118270255 - L1ME LINE L1 -645 5504 5258 608 308 174 20 chr12 26012305 26012762 -118269727 - L1ME LINE L1 -953 5176 4638 2479 221 48 23 chr12 26012762 26013373 -118269116 + MLT1E2 LTR MaLR 1 626 0 608 308 174 20 chr12 26013373 26013405 -118269084 - L1ME LINE L1 -1491 4638 4612 339 293 63 59 chr12 26013518 26014006 -118268483 - L1MEd LINE L1 -4866 1253 895 247 314 119 8 chr12 26014590 26014708 -118267781 - L1ME LINE L1 -478 5643 5513 3833 245 100 20 chr12 26016275 26017690 -118264799 + L1MEc LINE L1 38 1393 -4822 3770 199 20 31 chr12 26017675 26018740 -118263749 + L1MEc LINE L1 2170 3180 -3035 * 40268 41 26 2 chr12 26018740 26024749 -118257740 + L1PA4 LINE L1 2 6152 -3 21 0 0 0 chr12 26024749 26024770 -118257719 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr12 26025071 26025095 -118257394 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 289 242 116 0 chr12 26025355 26025450 -118257039 + L2 LINE L2 3130 3235 -78 608 174 31 0 chr12 26025702 26025800 -118256689 + 7SLRNA srpRNA srpRNA 206 306 -14 209 33 33 0 chr12 26026773 26026803 -118255686 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1096 119 31 0 chr12 26027109 26027303 -118255186 + L1MA4 LINE L1 6096 6295 -5 14429 153 34 6 chr12 26027479 26030873 -118251616 - L1MA2 LINE L1 0 7723 4154 2401 120 19 6 chr12 26030873 26031232 -118251257 - THE1B LTR MaLR 0 364 1 14429 153 34 6 chr12 26031232 26032561 -118249928 - L1MA2 LINE L1 -3569 4154 2863 7846 201 14 8 chr12 26032566 26034394 -118248095 - L1 LINE L1 -2198 5367 3530 7616 145 27 10 chr12 26034400 26036064 -118246425 - L1PBa LINE L1 -4081 2782 886 360 290 0 0 chr12 26036066 26036159 -118246330 + C-rich Low_complexity Low_complexity 1 93 0 2902 254 54 19 chr12 26036388 26037395 -118245094 - L1MA2 LINE L1 -5816 1750 709 8868 182 38 69 chr12 26037408 26037738 -118244751 - L1 LINE L1 -5451 2114 1775 369 0 0 0 chr12 26037738 26037779 -118244710 + (TC)n Simple_repeat Simple_repeat 2 42 0 8868 182 38 69 chr12 26037779 26039618 -118242871 - L1 LINE L1 -5790 1775 12 723 243 225 16 chr12 26040316 26040798 -118241691 - L1ME3A LINE L1 -295 5867 5275 390 284 69 76 chr12 26040803 26041078 -118241411 - L1ME2 LINE L1 -1 6163 5891 191 119 0 71 chr12 26041780 26041822 -118240667 - L2 LINE L2 -5 3267 3229 2252 138 20 81 chr12 26041890 26042346 -118240143 + MSTA LTR MaLR 1 428 0 200 366 73 26 chr12 26042530 26042721 -118239768 - L2 LINE L2 -345 2969 2770 295 270 11 98 chr12 26042912 26043086 -118239403 - MLT1J LTR MaLR -241 270 112 235 353 165 5 chr12 26043144 26043362 -118239127 - L2 LINE L2 -665 2649 2397 538 323 18 0 chr12 26043575 26043742 -118238747 + MIR3 SINE MIR 31 200 -8 181 385 11 11 chr12 26045203 26045294 -118237195 + MIR SINE MIR 20 110 -152 1523 232 83 51 chr12 26045404 26045934 -118236555 + L2 LINE L2 2414 2960 -354 1610 158 20 43 chr12 26046128 26046267 -118236222 + AluJo SINE Alu 1 142 -170 2327 54 0 60 chr12 26046267 26046584 -118235905 + AluY SINE Alu 1 298 -13 1610 158 20 43 chr12 26046584 26046748 -118235741 + AluJo SINE Alu 142 297 -15 1898 148 47 18 chr12 26047623 26047961 -118234528 + MER7A DNA MER2_type 1 346 0 387 326 61 22 chr12 26048633 26048814 -118233675 - MIR SINE MIR -55 207 20 248 299 118 24 chr12 26049020 26049147 -118233342 - L2 LINE L2 -1 3271 3133 285 335 183 35 chr12 26049355 26050040 -118232449 - L2 LINE L2 -208 3064 2287 1936 158 20 18 chr12 26050095 26050437 -118232052 + MER2 DNA MER2_type 2 344 0 10887 43 0 4 chr12 26052711 26054833 -118227656 + L1PA5 LINE L1 4026 6153 -1 433 175 21 21 chr12 26054989 26055086 -118227403 + HsTC2 DNA Tc2 9 105 -1793 393 345 24 0 chr12 26055104 26055272 -118227217 - L1MEd LINE L1 -5506 613 442 219 247 210 0 chr12 26055994 26056075 -118226414 - MIR SINE MIR -44 218 121 312 164 0 0 chr12 26057697 26057764 -118224725 + GA-rich Low_complexity Low_complexity 4 70 0 329 328 40 8 chr12 26058354 26058479 -118224010 - MIR SINE MIR -105 157 29 1940 155 0 7 chr12 26058551 26058847 -118223642 + AluSx SINE Alu 1 294 -18 2257 99 0 0 chr12 26058860 26059183 -118223306 + AluY SINE Alu 1 323 0 706 203 8 0 chr12 26059402 26059535 -118222954 - MER45A DNA AcHobo -44 134 1 181 281 16 31 chr12 26060003 26060067 -118222422 + L2 LINE L2 3251 3313 0 203 355 40 105 chr12 26060096 26060400 -118222089 + L2 LINE L2 2967 3250 -22 642 308 53 19 chr12 26060414 26060570 -118221919 + MIR SINE MIR 4 153 -109 2131 171 83 13 chr12 26060570 26060968 -118221521 - MSTB LTR MaLR 0 426 1 9156 174 13 14 chr12 26060968 26062620 -118219869 - MSTB-int LTR MaLR 0 1651 1 2399 172 24 5 chr12 26062620 26063038 -118219451 - MSTB LTR MaLR 0 426 1 642 308 53 19 chr12 26063038 26063087 -118219402 + MIR SINE MIR 152 218 -44 1596 103 4 0 chr12 26063943 26064185 -118218304 + L1P5 LINE L1 5536 5778 -373 * 6960 140 38 9 chr12 26064183 26065966 -118216523 + L1M1 LINE L1 2402 4240 -3325 2073 117 0 0 chr12 26065966 26066240 -118216249 + AluSg SINE Alu 1 274 -36 22239 85 11 5 chr12 26066248 26069456 -118213033 + L1PA5 LINE L1 1 3227 -2919 9296 57 10 1 chr12 26069450 26071470 -118211019 + L1PA5 LINE L1 4113 6146 -8 * 2216 158 40 12 chr12 26071552 26071603 -118210886 + L1M1 LINE L1 4227 4275 -3290 2509 109 19 6 chr12 26071603 26071962 -118210527 + THE1B LTR MaLR 1 364 0 2216 158 40 12 chr12 26071962 26072409 -118210080 + L1M1 LINE L1 4275 4739 -2826 457 312 56 0 chr12 26074105 26074230 -118208259 + MIR SINE MIR 49 180 -82 2255 119 3 0 chr12 26074256 26074558 -118207931 + AluSx SINE Alu 6 308 -4 897 219 87 20 chr12 26074745 26075092 -118207397 - L1MC5 LINE L1 -83 7878 7509 1046 276 43 50 chr12 26075215 26075442 -118207047 - MER20B DNA MER1_type -322 461 234 2124 120 3 10 chr12 26075442 26075742 -118206747 - AluSx SINE Alu -14 298 1 1046 276 43 50 chr12 26075742 26075977 -118206512 - MER20B DNA MER1_type -549 234 2 211 308 183 19 chr12 26076767 26076871 -118205618 - MIR SINE MIR -67 141 21 180 0 0 0 chr12 26077922 26077942 -118204547 + (T)n Simple_repeat Simple_repeat 1 20 0 1911 50 50 4 chr12 26077948 26078187 -118204302 - AluY SINE Alu -61 250 1 1784 174 6 13 chr12 26078832 26079143 -118203346 + AluJo SINE Alu 1 309 -3 21 0 0 0 chr12 26079647 26079668 -118202821 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr12 26080941 26080969 -118201520 + AT_rich Low_complexity Low_complexity 1 28 0 350 244 173 0 chr12 26081918 26082045 -118200444 + MIR SINE MIR 110 258 -4 207 332 153 31 chr12 26083051 26083274 -118199215 - MIR SINE MIR 0 262 13 819 104 6 73 chr12 26084962 26085126 -118197363 + L1M3f LINE L1 1253 1405 -5160 3879 213 59 17 chr12 26085129 26086990 -118195499 + L1M3f LINE L1 2686 4628 -2937 1198 274 63 11 chr12 26087165 26087785 -118194704 - L1M4 LINE L1 -2418 3728 3077 37878 68 8 6 chr12 26087787 26093919 -118188570 - L1PA3 LINE L1 0 6155 11 241 383 63 34 chr12 26093987 26094337 -118188152 - L2 LINE L2 -625 2689 2330 333 0 0 0 chr12 26095739 26095776 -118186713 + (CA)n Simple_repeat Simple_repeat 1 37 0 25 0 0 0 chr12 26096148 26096173 -118186316 + AT_rich Low_complexity Low_complexity 1 25 0 1699 218 70 23 chr12 26096206 26096688 -118185801 + MLT1D LTR MaLR 1 505 0 200 271 68 0 chr12 26097057 26097116 -118185373 + L2 LINE L2 3250 3312 -1 298 241 126 45 chr12 26097382 26097581 -118184908 - L2 LINE L2 -1208 2106 1892 195 354 106 21 chr12 26097643 26097880 -118184609 + L2 LINE L2 2006 2262 -1052 2135 155 21 13 chr12 26098170 26098557 -118183932 - MLT1B LTR MaLR 0 390 1 188 277 0 0 chr12 26098830 26098877 -118183612 + L3b LINE CR1 1102 1148 -435 1853 148 3 38 chr12 26098890 26099207 -118183282 - AluJb SINE Alu -6 306 1 22 35 0 0 chr12 26099302 26099331 -118183158 + AT_rich Low_complexity Low_complexity 1 29 0 574 249 140 31 chr12 26099393 26099529 -118182960 - L2 LINE L2 -8 3305 3185 281 26 26 0 chr12 26099529 26099567 -118182922 + (CA)n Simple_repeat Simple_repeat 2 40 0 574 249 140 31 chr12 26099567 26099687 -118182802 - L2 LINE L2 -128 3185 3021 202 162 353 0 chr12 26099709 26099777 -118182712 - MIR SINE MIR 0 262 171 2406 126 78 0 chr12 26099787 26100185 -118182304 + L1MD1 LINE L1 5801 6229 -13 964 179 49 62 chr12 26100185 26100452 -118182037 + L1ME1 LINE L1 5899 6159 -7 297 225 0 28 chr12 26100503 26100574 -118181915 - MIR SINE MIR -121 141 73 702 247 28 6 chr12 26100855 26101037 -118181452 - L2 LINE L2 -1730 1584 1399 322 314 170 13 chr12 26101368 26101521 -118180968 - MIR SINE MIR -73 189 13 517 263 29 35 chr12 26101656 26101827 -118180662 - MER5B DNA MER1_type -7 171 2 229 356 14 0 chr12 26102299 26102372 -118180117 + L2 LINE L2 3239 3312 -1 430 286 31 10 chr12 26102469 26102661 -118179828 - L1ME LINE L1 -325 5796 5601 270 0 0 0 chr12 26102664 26102694 -118179795 + (TC)n Simple_repeat Simple_repeat 2 31 0 41 78 0 0 chr12 26103775 26103865 -118178624 + AT_rich Low_complexity Low_complexity 1 90 0 2117 230 12 46 chr12 26104188 26104812 -118177677 - L1MDa LINE L1 -5840 700 19 1144 83 0 0 chr12 26105096 26105240 -118177249 + U4 snRNA snRNA 1 144 -1 946 313 116 13 chr12 26105318 26105928 -118176561 + HAL1 LINE L1 37 709 -1798 1460 217 101 116 chr12 26105935 26106225 -118176264 + HAL1 LINE L1 1227 1520 -987 2311 83 3 17 chr12 26106225 26106527 -118175962 + AluY SINE Alu 1 298 -13 1460 217 101 116 chr12 26106527 26106799 -118175690 + HAL1 LINE L1 1520 1795 -712 2097 131 3 0 chr12 26106799 26107090 -118175399 + AluSg SINE Alu 1 292 -18 1460 217 101 116 chr12 26107090 26107633 -118174856 + HAL1 LINE L1 1795 2345 -162 2370 109 19 30 chr12 26107633 26108001 -118174488 - THE1B LTR MaLR 0 364 1 11678 96 6 2 chr12 26108001 26109574 -118172915 - THE1B-int LTR MaLR 0 1580 2 2390 111 11 27 chr12 26109575 26109945 -118172544 - THE1B LTR MaLR 0 364 1 1460 217 101 116 chr12 26109945 26110047 -118172442 + HAL1 LINE L1 2343 2420 -87 1469 201 40 11 chr12 26110860 26110983 -118171506 + AluJo SINE Alu 1 119 -193 375 78 0 0 chr12 26110983 26111034 -118171455 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1469 201 40 11 chr12 26111034 26111184 -118171305 + AluJo SINE Alu 119 282 -30 1797 205 63 17 chr12 26111184 26111663 -118170826 + L1MD3 LINE L1 7487 7987 -8 800 162 0 0 chr12 26111680 26111797 -118170692 + FLAM_C SINE Alu 1 117 -16 26 30 0 0 chr12 26111801 26111834 -118170655 + AT_rich Low_complexity Low_complexity 1 33 0 691 249 75 54 chr12 26112187 26112520 -118169969 + LTR33 LTR ERVL 182 521 0 545 171 0 38 chr12 26112666 26112797 -118169692 - AluJb SINE Alu 0 309 183 411 346 86 6 chr12 26113213 26113375 -118169114 - MIR SINE MIR -70 192 18 2010 122 0 21 chr12 26113494 26113827 -118168662 + AluSx SINE Alu 1 327 0 240 146 0 0 chr12 26113867 26113908 -118168581 + MER103 DNA DNA 3 43 -123 595 259 27 7 chr12 26113927 26114074 -118168415 + MER91B DNA MER1_type 36 185 -5 2242 96 3 0 chr12 26114532 26114851 -118167638 - AluSx SINE Alu 0 320 1 392 254 62 46 chr12 26114853 26114983 -118167506 - L2 LINE L2 -2 3311 3180 * 482 368 56 19 chr12 26114979 26115493 -118166996 - L2 LINE L2 -2299 1015 483 209 265 88 0 chr12 26115527 26115595 -118166894 - L2 LINE L2 -2910 404 331 2076 98 35 0 chr12 26116011 26116297 -118166192 - AluSg SINE Alu -14 296 1 625 280 55 25 chr12 26116707 26116943 -118165546 - MIR SINE MIR 0 262 20 1475 86 5 5 chr12 26116943 26117163 -118165326 - pTR5 LTR ERV1 -2047 391 172 333 204 31 20 chr12 26117166 26117264 -118165225 - LTR30 LTR ERV1 -80 642 544 4182 130 61 79 chr12 26117264 26118279 -118164210 - pTR5 LTR ERV1 -413 2025 743 2347 97 0 0 chr12 26118381 26118691 -118163798 - AluY SINE Alu -1 310 1 1242 90 150 0 chr12 26118829 26119029 -118163460 - MER30 DNA MER1_type 0 230 1 1239 150 0 42 chr12 26119105 26119298 -118163191 + AluJo SINE Alu 1 185 -127 1229 181 51 60 chr12 26119720 26119960 -118162529 - MLT1B LTR MaLR 0 390 149 2237 92 0 0 chr12 26119960 26120264 -118162225 - AluSx SINE Alu 0 304 1 1229 181 51 60 chr12 26120264 26120276 -118162213 - MLT1B LTR MaLR -241 149 138 1983 125 40 7 chr12 26120276 26120572 -118161917 - AluSx SINE Alu -2 310 5 1229 181 51 60 chr12 26120572 26120778 -118161711 - MLT1B LTR MaLR -252 138 1 190 227 45 0 chr12 26122133 26122177 -118160312 - L2 LINE L2 -4 3309 3264 459 0 0 0 chr12 26123972 26124023 -118158466 + (TG)n Simple_repeat Simple_repeat 2 52 0 375 286 191 5 chr12 26124705 26124915 -118157574 - MIR SINE MIR -1 261 13 1679 196 0 0 chr12 26125281 26125587 -118156902 + AluJb SINE Alu 1 306 -6 245 307 123 0 chr12 26125866 26125978 -118156511 + MIR SINE MIR 29 156 -52 1487 191 47 0 chr12 26126023 26126280 -118156209 - AluJo SINE Alu -43 269 1 355 330 147 14 chr12 26126280 26126624 -118155865 + L2 LINE L2 2097 2491 -823 233 270 43 128 chr12 26126715 26127057 -118155432 + L2 LINE L2 2740 3077 -195 256 268 56 108 chr12 26127203 26127453 -118155036 + L2 LINE L2 3029 3265 -7 1875 161 0 19 chr12 26127789 26128105 -118154384 - AluJb SINE Alu -2 310 1 314 200 0 17 chr12 26128949 26129009 -118153480 + MER112 DNA MER1_type 6 64 -196 2305 118 0 3 chr12 26129549 26129862 -118152627 + AluSx SINE Alu 1 312 0 382 211 0 13 chr12 26130066 26130142 -118152347 - MER112 DNA MER1_type 0 260 186 1780 137 3 72 chr12 26130509 26130880 -118151609 - MER4A LTR ERV1 0 664 261 471 167 89 0 chr12 26130880 26130970 -118151519 - MER4A LTR ERV1 -566 98 1 209 137 39 0 chr12 26130974 26131025 -118151464 + CT-rich Low_complexity Low_complexity 5 57 0 1952 106 4 4 chr12 26131032 26131306 -118151183 - AluSx SINE Alu -38 274 1 346 183 0 17 chr12 26131320 26131380 -118151109 - MER112 DNA MER1_type -196 64 6 318 340 27 7 chr12 26131392 26131539 -118150950 - L2 LINE L2 -729 2585 2436 1894 166 0 0 chr12 26132119 26132421 -118150068 - AluJo SINE Alu -10 302 1 2501 118 3 0 chr12 26132509 26132848 -118149641 - L1PA16 LINE L1 -13 6153 5814 535 273 84 44 chr12 26133043 26133489 -118149000 - LTR33A LTR ERVL -2 521 1 735 107 8 14 chr12 26133697 26133942 -118148547 + AluSx SINE Alu 1 293 -17 35 24 0 0 chr12 26133942 26133984 -118148505 + AT_rich Low_complexity Low_complexity 1 42 0 896 104 0 15 chr12 26134131 26134265 -118148224 + FLAM_C SINE Alu 2 133 0 461 192 18 132 chr12 26134293 26134460 -118148029 - MIR SINE MIR -13 249 102 250 230 0 27 chr12 26134750 26134824 -118147665 - MLT1K LTR MaLR -6 582 511 1733 159 0 39 chr12 26134824 26135133 -118147356 + AluJb SINE Alu 2 298 -14 497 280 102 64 chr12 26135162 26135505 -118146984 - MLT1K LTR MaLR -73 515 160 616 268 72 25 chr12 26136414 26136649 -118145840 - MIR SINE MIR -9 253 8 280 283 44 18 chr12 26136648 26136761 -118145728 + L2 LINE L2 3164 3279 -34 * 859 219 0 0 chr12 26136842 26136988 -118145501 - FRAM SINE Alu -30 146 1 22 35 0 0 chr12 26136995 26137024 -118145465 + AT_rich Low_complexity Low_complexity 1 29 0 508 213 28 0 chr12 26137024 26137132 -118145357 - L1MA9 LINE L1 -22 6290 6180 371 208 26 0 chr12 26137135 26137212 -118145277 - L1MA9 LINE L1 -232 6080 6002 292 302 93 8 chr12 26137274 26137403 -118145086 - L2 LINE L2 -9 3304 3165 860 292 211 13 chr12 26137428 26137811 -118144678 - L2 LINE L2 -516 2798 2340 230 254 0 0 chr12 26138213 26138268 -118144221 - L2 LINE L2 -2 3311 3257 185 0 40 0 chr12 26138365 26138390 -118144099 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2312 121 0 13 chr12 26138867 26139181 -118143308 + AluSx SINE Alu 1 310 -2 194 220 17 0 chr12 26140614 26140673 -118141816 + (CA)n Simple_repeat Simple_repeat 1 60 0 371 273 91 8 chr12 26141815 26141936 -118140553 + L1ME3A LINE L1 6020 6150 -20 236 236 0 0 chr12 26141920 26141975 -118140514 - L1MC4 LINE L1 -1340 6702 6648 * 2771 23 3 0 chr12 26143427 26143737 -118138752 + AluY SINE Alu 1 311 0 195 390 10 10 chr12 26143941 26144041 -118138448 + MIR SINE MIR 41 140 -68 2101 210 83 7 chr12 26144079 26144537 -118137952 + MLT1D LTR MaLR 13 505 0 3928 281 56 40 chr12 26144544 26145894 -118136595 + L1MB8 LINE L1 1 1372 -5487 15244 193 20 15 chr12 26145902 26150558 -118131931 + L1PB1 LINE L1 6 5000 -1867 2302 103 6 3 chr12 26150558 26150869 -118131620 + AluSp SINE Alu 1 312 -1 15244 193 20 15 chr12 26150869 26152747 -118129742 + L1PB1 LINE L1 5000 6867 0 1570 235 40 34 chr12 26152757 26153233 -118129256 + L1MB8 LINE L1 1352 1830 -5025 872 154 68 25 chr12 26153282 26153484 -118129005 + L1M4 LINE L1 5246 5455 -723 * 7028 209 37 9 chr12 26153461 26155812 -118126677 + L1MB8 LINE L1 4443 6864 -125 1895 134 24 10 chr12 26155831 26156123 -118126366 + AluJb SINE Alu 5 300 -12 931 150 0 0 chr12 26156598 26156731 -118125758 - FLAM_C SINE Alu 0 133 1 15300 24 1 0 chr12 26156838 26159290 -118123199 - L1PA2 LINE L1 -2 6153 3700 21461 45 51 3 chr12 26159290 26161987 -118120502 - L1PA2 LINE L1 -3319 2827 2 365 294 20 0 chr12 26163169 26163271 -118119218 - MER5A DNA MER1_type -83 106 3 671 280 59 18 chr12 26166049 26166383 -118116106 + MLT1G1 LTR MaLR 3 358 -184 1330 176 19 54 chr12 26167005 26167318 -118115171 - L1MA9 LINE L1 0 6312 6011 336 48 0 0 chr12 26167573 26167615 -118114874 + (TG)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr12 26168435 26168458 -118114031 + AT_rich Low_complexity Low_complexity 1 23 0 1706 153 3 20 chr12 26168508 26168808 -118113681 - AluY SINE Alu -16 295 1 283 235 157 43 chr12 26169263 26169378 -118113111 + MIR SINE MIR 49 176 -86 1365 216 40 63 chr12 26170041 26170421 -118112068 + MLT1A2 LTR MaLR 4 374 0 643 306 108 56 chr12 26170816 26171297 -118111192 - L2 LINE L2 -4 3309 2804 798 225 78 39 chr12 26171350 26171608 -118110881 - MLT1L LTR MaLR -326 289 22 1596 332 128 36 chr12 26171647 26172040 -118110449 - L2 LINE L2 -1000 2314 1959 1435 186 30 30 chr12 26172040 26172335 -118110154 + AluJb SINE Alu 1 295 -17 1596 332 128 36 chr12 26172335 26173272 -118109217 - L2 LINE L2 -1355 1959 869 374 323 134 10 chr12 26173520 26173721 -118108768 + MIR SINE MIR 36 261 -1 21 0 0 0 chr12 26173969 26173990 -118108499 + AT_rich Low_complexity Low_complexity 1 21 0 1472 165 45 36 chr12 26175060 26175369 -118107120 + AluJb SINE Alu 1 312 0 24 0 0 0 chr12 26175590 26175614 -118106875 + AT_rich Low_complexity Low_complexity 1 24 0 275 48 0 24 chr12 26175784 26175826 -118106663 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 351 284 80 0 chr12 26175908 26176070 -118106419 - L1ME4a LINE L1 -3 6118 5944 202 184 0 26 chr12 26176929 26176967 -118105522 - L2 LINE L2 -32 3240 3204 995 196 29 29 chr12 26176999 26177049 -118105440 - MER3 DNA MER1_type 0 209 160 2384 96 0 0 chr12 26177049 26177352 -118105137 - AluSg SINE Alu -7 303 1 995 196 29 29 chr12 26177352 26177510 -118104979 - MER3 DNA MER1_type -48 161 1 479 202 85 23 chr12 26177813 26177942 -118104547 - Charlie7 DNA MER1_type -1923 689 553 2066 108 3 56 chr12 26178237 26178560 -118103929 - AluSc SINE Alu -1 308 3 260 296 14 63 chr12 26178915 26179057 -118103432 + MIR3 SINE MIR 59 193 -15 2172 94 0 36 chr12 26179161 26179470 -118103019 - AluSg SINE Alu -12 298 1 213 333 119 46 chr12 26180804 26181023 -118101466 - MIR SINE MIR -27 235 1 1424 127 0 0 chr12 26182006 26182203 -118100286 + L1PA13 LINE L1 5952 6148 -15 240 323 31 10 chr12 26182207 26182303 -118100186 - L2 LINE L2 -61 3252 3155 1412 172 28 31 chr12 26182549 26182840 -118099649 - MLT1B LTR MaLR 0 390 101 1330 130 0 5 chr12 26182840 26183032 -118099457 - AluJb SINE Alu -13 299 109 442 20 0 0 chr12 26183135 26183185 -118099304 - AluY SINE Alu -258 51 2 370 314 32 8 chr12 26183939 26184063 -118098426 - MIR SINE MIR -118 144 18 287 389 16 0 chr12 26184694 26184820 -118097669 + L2 LINE L2 3145 3272 0 2095 123 7 0 chr12 26184837 26185137 -118097352 + AluSg SINE Alu 1 302 -8 264 167 0 0 chr12 26185457 26185505 -118096984 - MIR SINE MIR -130 132 85 692 261 173 15 chr12 26186163 26186492 -118095997 + LTR50 LTR ERVL 95 475 -320 713 145 14 72 chr12 26187671 26187809 -118094680 + AluJb SINE Alu 5 134 -178 23 0 0 0 chr12 26188003 26188026 -118094463 + AT_rich Low_complexity Low_complexity 1 23 0 180 158 0 0 chr12 26188386 26188424 -118094065 + (CA)n Simple_repeat Simple_repeat 1 38 0 212 29 0 59 chr12 26189551 26189585 -118092904 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 560 221 24 99 chr12 26190708 26190921 -118091568 + L2 LINE L2 3117 3313 0 21 36 0 0 chr12 26191210 26191238 -118091251 + AT_rich Low_complexity Low_complexity 1 28 0 34882 68 7 6 chr12 26191933 26197323 -118085166 - L1PA6 LINE L1 0 6469 1074 1558 176 0 4 chr12 26197314 26197575 -118084914 - L1PA6 LINE L1 -6192 269 10 * 2770 20 0 0 chr12 26197915 26198219 -118084270 + AluYb8 SINE Alu 1 304 -14 23 78 0 0 chr12 26198299 26198350 -118084139 + AT_rich Low_complexity Low_complexity 1 51 0 33 0 0 0 chr12 26198375 26198408 -118084081 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr12 26198616 26198641 -118083848 + AT_rich Low_complexity Low_complexity 1 25 0 347 169 0 17 chr12 26199467 26199526 -118082963 - MER81 DNA DNA -49 65 8 495 0 0 0 chr12 26200106 26200161 -118082328 + (TC)n Simple_repeat Simple_repeat 1 55 0 355 313 147 38 chr12 26201002 26201213 -118081276 + MIR SINE MIR 29 262 0 596 273 120 5 chr12 26202185 26202401 -118080088 + MIR SINE MIR 3 243 -19 360 248 56 16 chr12 26202521 26202646 -118079843 - LTR33 LTR ERVL -2 519 390 285 165 113 122 chr12 26202712 26202827 -118079662 - LTR33 LTR ERVL -258 263 150 266 322 11 0 chr12 26202889 26202979 -118079510 - MLT1I LTR MaLR -254 155 65 449 301 166 10 chr12 26203062 26203261 -118079228 + MIR SINE MIR 20 249 -13 226 281 73 0 chr12 26203946 26204028 -118078461 - L1MC4 LINE L1 -1347 6695 6608 2124 129 0 13 chr12 26204042 26204353 -118078136 - AluSx SINE Alu -4 308 2 2245 112 0 0 chr12 26205567 26205861 -118076628 - AluSq SINE Alu -19 294 1 1353 110 105 5 chr12 26206132 26206341 -118076148 + MER30 DNA MER1_type 1 230 0 459 351 32 63 chr12 26206972 26207257 -118075232 + L2 LINE L2 2995 3270 -2 1330 353 70 27 chr12 26207263 26208429 -118074060 - L2 LINE L2 -337 2977 1761 321 300 72 56 chr12 26209199 26209449 -118073040 - L2 LINE L2 -397 2917 2664 225 332 205 0 chr12 26210292 26210482 -118072007 + MIR SINE MIR 18 246 -16 558 303 65 39 chr12 26210518 26210825 -118071664 - L2 LINE L2 -830 2484 2170 257 192 154 0 chr12 26211198 26211276 -118071213 + L1ME4a LINE L1 5997 6086 -35 198 0 0 0 chr12 26211527 26211549 -118070940 + (TTA)n Simple_repeat Simple_repeat 2 23 0 697 335 89 30 chr12 26211871 26212188 -118070301 + L2 LINE L2 2377 2737 -577 1892 169 0 0 chr12 26212188 26212484 -118070005 + AluJb SINE Alu 1 296 -16 697 335 89 30 chr12 26212484 26212670 -118069819 + L2 LINE L2 2737 2910 -404 401 327 127 23 chr12 26214043 26214343 -118068146 - L2 LINE L2 -834 2480 2150 9847 97 13 1 chr12 26215884 26217153 -118065336 - HSMAR1 DNA Mariner 0 1287 3 4823 135 32 58 chr12 26217822 26219029 -118063460 + pTR5 LTR ERV1 1000 2606 0 244 147 0 0 chr12 26219029 26219063 -118063426 - Alu SINE Alu -269 34 1 211 307 31 71 chr12 26219745 26219826 -118062663 + MIR SINE MIR 129 205 -57 2766 128 34 2 chr12 26219826 26220241 -118062248 + MSTA LTR MaLR 1 428 0 211 307 31 71 chr12 26220241 26220286 -118062203 + MIR SINE MIR 205 250 -12 231 233 41 41 chr12 26220411 26220484 -118062005 + L2 LINE L2 3241 3313 0 558 223 198 0 chr12 26221422 26221527 -118060962 - MER5A DNA MER1_type -1 188 105 2310 223 37 29 chr12 26221527 26222043 -118060446 - MLT2B1 LTR ERVL 0 520 1 558 223 198 0 chr12 26222043 26222094 -118060395 - MER5A DNA MER1_type -84 105 1 463 273 25 66 chr12 26222635 26222833 -118059656 + MIR SINE MIR 9 198 -64 2415 168 10 5 chr12 26222833 26223225 -118059264 + Tigger7 DNA MER2_type 1 394 -339 487 160 245 0 chr12 26223475 26223581 -118058908 + Tigger7 DNA MER2_type 390 521 -212 * 496 149 23 0 chr12 26223580 26223667 -118058822 + Tigger7 DNA MER2_type 2396 2484 -3 216 0 0 0 chr12 26223735 26223759 -118058730 + (TTA)n Simple_repeat Simple_repeat 3 26 0 197 313 16 0 chr12 26223759 26223823 -118058666 + L2 LINE L2 3204 3268 -4 1366 189 134 22 chr12 26225320 26225679 -118056810 - MLT1D LTR MaLR -106 399 1 915 313 58 12 chr12 26226624 26227056 -118055433 + LTR16B LTR ERVL 1 452 -12 1814 153 0 3 chr12 26227072 26227360 -118055129 + AluJb SINE Alu 1 287 -25 29 0 0 0 chr12 26227361 26227390 -118055099 + AT_rich Low_complexity Low_complexity 1 29 0 3271 249 77 46 chr12 26229701 26229775 -118052714 + L1MEc LINE L1 35 105 -6291 1854 172 0 0 chr12 26229775 26230071 -118052418 + AluSx SINE Alu 12 307 -5 3271 249 77 46 chr12 26230071 26230392 -118052097 + L1MEc LINE L1 105 415 -5981 2159 130 0 13 chr12 26230392 26230708 -118051781 + AluSq SINE Alu 1 312 -1 3271 249 77 46 chr12 26230708 26231894 -118050595 + L1MEc LINE L1 415 1666 -4730 32 26 0 0 chr12 26231936 26231975 -118050514 + AT_rich Low_complexity Low_complexity 1 39 0 248 317 0 0 chr12 26232253 26232335 -118050154 + MIR3 SINE MIR 121 202 -6 1831 158 108 6 chr12 26232345 26232687 -118049802 - MSTA LTR MaLR 0 428 52 190 333 0 0 chr12 26232703 26232760 -118049729 - L2 LINE L2 -568 2746 2690 1008 212 8 4 chr12 26232775 26233039 -118049450 - MER33 DNA MER1_type 0 324 60 368 352 28 0 chr12 26233065 26233210 -118049279 - L2 LINE L2 -641 2673 2525 208 254 0 0 chr12 26233363 26233418 -118049071 + T-rich Low_complexity Low_complexity 2 56 0 238 326 11 22 chr12 26233494 26233586 -118048903 - L2 LINE L2 -5 3267 3177 229 157 39 0 chr12 26233633 26233684 -118048805 - MLT2E LTR ERVL -541 87 35 2579 174 24 59 chr12 26233960 26234536 -118047953 + MER89 LTR ERV1 4 559 0 610 316 5 21 chr12 26234635 26234825 -118047664 + MIR SINE MIR 2 188 -74 2651 136 7 14 chr12 26234892 26235312 -118047177 + MSTB LTR MaLR 1 417 -9 8594 165 28 5 chr12 26235323 26236851 -118045638 + MSTB-int LTR MaLR 3 1565 -86 766 153 0 0 chr12 26236885 26237009 -118045480 + MSTA LTR MaLR 3 126 -300 * 1107 160 0 0 chr12 26237007 26237182 -118045307 + MSTA LTR MaLR 254 428 0 474 18 0 0 chr12 26237406 26237461 -118045028 + (CA)n Simple_repeat Simple_repeat 2 56 0 438 299 120 21 chr12 26237814 26238048 -118044441 - MIR SINE MIR -1 261 5 32 75 0 0 chr12 26238407 26238474 -118044015 + AT_rich Low_complexity Low_complexity 1 67 0 2062 161 15 26 chr12 26239854 26240389 -118042100 - LTR10E LTR ERV1 -43 590 1 778 212 54 70 chr12 26240679 26240783 -118041706 - MIR SINE MIR -7 255 151 2301 98 10 0 chr12 26240783 26241090 -118041399 - AluSq SINE Alu 0 313 4 778 212 54 70 chr12 26241090 26241230 -118041259 - MIR SINE MIR -111 151 6 1266 190 97 31 chr12 26241906 26242227 -118040262 + MLT2B1 LTR ERVL 1 342 -178 2853 145 87 19 chr12 26242228 26243008 -118039481 - Charlie1a DNA MER1_type -302 1153 261 728 198 193 0 chr12 26243009 26243201 -118039288 - Charlie1a DNA MER1_type -1213 242 14 886 231 208 23 chr12 26244124 26244471 -118038018 + L2 LINE L2 2889 3299 -14 588 118 0 0 chr12 26244476 26244561 -118037928 + AluS SINE Alu 1 85 -228 368 320 36 89 chr12 26244727 26245008 -118037481 + L2 LINE L2 2997 3262 -10 214 292 226 30 chr12 26245225 26245393 -118037096 - L2 LINE L2 -695 2619 2419 213 327 48 58 chr12 26245851 26245955 -118036534 - MIR3 SINE MIR -37 171 69 429 371 62 11 chr12 26246519 26246794 -118035695 - MLT1K LTR MaLR -298 290 2 1307 171 39 7 chr12 26247241 26247543 -118034946 + MER61B LTR ERV1 1 396 -29 237 311 117 10 chr12 26248007 26248110 -118034379 + L2 LINE L2 3187 3300 -13 363 250 16 8 chr12 26248603 26248727 -118033762 + L1MC4a LINE L1 5689 5813 -1995 279 0 0 0 chr12 26248821 26248852 -118033637 + (CA)n Simple_repeat Simple_repeat 2 32 0 28 48 0 0 chr12 26249263 26249305 -118033184 + AT_rich Low_complexity Low_complexity 1 42 0 392 219 293 0 chr12 26249374 26249538 -118032951 + L1MC4a LINE L1 6558 6769 -1039 807 242 26 65 chr12 26249540 26249932 -118032557 + L1MC5 LINE L1 6881 7176 -632 294 314 8 8 chr12 26249926 26250044 -118032445 + L1MC4a LINE L1 7241 7358 -450 * 793 231 135 65 chr12 26250089 26250703 -118031786 + L1MC5 LINE L1 7261 7917 -44 276 226 70 181 chr12 26251659 26251902 -118030587 + MIR SINE MIR 15 230 -32 762 273 26 22 chr12 26252034 26252301 -118030188 + MLT1J LTR MaLR 42 309 -202 266 327 190 10 chr12 26253472 26253677 -118028812 - L3b LINE CR1 -240 1343 1102 1724 160 7 14 chr12 26253686 26253979 -118028510 + AluJb SINE Alu 1 291 -21 192 135 0 0 chr12 26254115 26254152 -118028337 + (CA)n Simple_repeat Simple_repeat 1 37 0 296 269 274 20 chr12 26254445 26254646 -118027843 - MIR SINE MIR -9 253 2 856 178 16 5 chr12 26255173 26255358 -118027131 + MER53 DNA DNA 1 187 -2 21 0 0 0 chr12 26255432 26255453 -118027036 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 26255497 26255521 -118026968 + AT_rich Low_complexity Low_complexity 1 24 0 2189 79 0 0 chr12 26255564 26255879 -118026610 + AluY SINE Alu 1 315 0 2608 191 12 60 chr12 26255892 26256220 -118026269 + L1MDb LINE L1 543 828 -5581 1884 75 90 36 chr12 26256220 26256499 -118025990 + AluSx SINE Alu 1 294 -18 2608 191 12 60 chr12 26256499 26256808 -118025681 + L1MDb LINE L1 828 1150 -5259 7661 23 0 0 chr12 26257436 26258354 -118024135 + L1PA3 LINE L1 5254 6171 0 312 277 67 0 chr12 26258364 26258483 -118024006 + L1 LINE L1 4367 4493 -1653 248 209 0 0 chr12 26258521 26258564 -118023925 - L2 LINE L2 -8 3264 3222 * 584 231 81 12 chr12 26258532 26258692 -118023797 - MIR SINE MIR -13 249 79 * 1720 256 164 26 chr12 26258689 26259374 -118023115 + L2 LINE L2 1088 1866 -1448 423 244 174 6 chr12 26259378 26259550 -118022939 + L2 LINE L2 2170 2370 -944 430 285 76 44 chr12 26259555 26260012 -118022477 - LTR33 LTR ERVL -2 519 1 616 285 124 10 chr12 26260012 26260310 -118022179 + L2 LINE L2 2371 2702 -612 3330 247 100 18 chr12 26260311 26261251 -118021238 - L1MEc LINE L1 -2731 4226 3128 216 67 0 0 chr12 26261251 26261281 -118021208 + (TA)n Simple_repeat Simple_repeat 1 30 0 3330 247 100 18 chr12 26261281 26261926 -118020563 - L1MEc LINE L1 -3829 3128 2537 1585 268 50 24 chr12 26262134 26262816 -118019673 - L1MEc LINE L1 -4480 2479 1780 260 241 0 0 chr12 26262803 26262861 -118019628 - L1MEc LINE L1 -5673 1186 1129 * 2586 111 58 0 chr12 26263066 26263482 -118019007 + MER75 DNA T2_type 75 514 0 411 301 131 22 chr12 26263660 26263843 -118018646 + L2 LINE L2 2868 3070 -243 69 24 0 0 chr12 26263859 26263942 -118018547 + AT_rich Low_complexity Low_complexity 1 83 0 265 329 49 0 chr12 26264020 26264102 -118018387 + L2 LINE L2 3223 3308 -5 21 36 0 0 chr12 26264732 26264760 -118017729 + AT_rich Low_complexity Low_complexity 1 28 0 211 283 152 43 chr12 26266272 26266364 -118016125 - L2 LINE L2 -9 3263 3162 743 289 95 4 chr12 26266386 26266618 -118015871 + MIR SINE MIR 9 261 -1 756 301 137 12 chr12 26266620 26266725 -118015764 - L2 LINE L2 -121 3192 3102 2299 129 5 45 chr12 26266725 26267104 -118015385 - THE1B LTR MaLR 0 364 1 756 301 137 12 chr12 26267104 26267340 -118015149 - L2 LINE L2 -211 3102 2808 517 225 33 0 chr12 26267973 26268093 -118014396 + MER94 DNA DNA 1 124 -10 895 309 80 19 chr12 26268121 26268208 -118014281 - L2 LINE L2 -528 2786 2706 3749 138 29 69 chr12 26268208 26268967 -118013522 + L1MA9 LINE L1 5544 6332 20 1849 140 11 0 chr12 26268967 26269232 -118013257 - AluSx SINE Alu -44 268 1 230 0 33 0 chr12 26269241 26269271 -118013218 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3749 138 29 69 chr12 26269271 26269301 -118013188 + L1MA9 LINE L1 6281 6311 -1 895 309 80 19 chr12 26269301 26269576 -118012913 - L2 LINE L2 -608 2706 2402 675 258 60 32 chr12 26269649 26269901 -118012588 - MIR SINE MIR -2 260 2 2589 58 0 0 chr12 26270139 26270447 -118012042 + AluY SINE Alu 1 308 -3 440 294 75 32 chr12 26270606 26270742 -118011747 + MIR SINE MIR 15 163 -99 1297 273 60 19 chr12 26270742 26271174 -118011315 + MLT1J2 LTR MaLR 1 450 0 440 294 75 32 chr12 26271174 26271224 -118011265 + MIR SINE MIR 163 209 -53 1094 225 13 114 chr12 26271482 26271878 -118010611 - MLT1A1 LTR MaLR 0 365 10 492 18 0 0 chr12 26273768 26273825 -118008664 + (CA)n Simple_repeat Simple_repeat 2 58 0 195 314 57 81 chr12 26275123 26275247 -118007242 + L3b LINE CR1 1190 1310 -273 706 283 70 4 chr12 26276086 26276316 -118006173 - MIR SINE MIR 0 262 18 1357 223 225 17 chr12 26276571 26277418 -118005071 - L1MC4 LINE L1 -98 7710 6731 363 248 264 0 chr12 26277461 26277590 -118004899 - L1MC4a LINE L1 -1205 6603 6441 1335 244 115 26 chr12 26278462 26278995 -118003494 + L1ME3A LINE L1 5337 5932 -238 1327 176 61 29 chr12 26279174 26279453 -118003036 - AluJo SINE Alu -22 290 3 37 39 0 0 chr12 26279485 26279536 -118002953 + AT_rich Low_complexity Low_complexity 1 51 0 180 401 23 23 chr12 26279687 26279819 -118002670 - MIR3 SINE MIR -67 141 10 246 348 177 6 chr12 26279836 26279994 -118002495 - MIR SINE MIR -57 205 21 281 336 30 37 chr12 26280248 26280382 -118002107 - MIR3 SINE MIR -66 142 10 496 228 92 43 chr12 26281245 26281429 -118001060 - MIR SINE MIR -10 252 60 356 210 241 25 chr12 26282192 26282354 -118000135 - L2 LINE L2 -19 3294 3098 276 241 0 51 chr12 26282381 26282460 -118000029 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 265 293 0 12 chr12 26283197 26283279 -117999210 - MIR SINE MIR -11 251 171 1758 163 6 45 chr12 26283472 26283785 -117998704 + AluJo SINE Alu 1 301 -11 288 306 219 10 chr12 26285410 26285606 -117996883 + MIR SINE MIR 20 256 -6 5797 250 112 17 chr12 26285672 26287348 -117995141 + L1ME1 LINE L1 47 1958 -4257 2352 84 0 3 chr12 26287348 26287647 -117994842 + AluSc SINE Alu 1 298 -11 5797 250 112 17 chr12 26287647 26288369 -117994120 + L1ME1 LINE L1 1958 2610 -3605 282 235 27 94 chr12 26288411 26288560 -117993929 + L1ME1 LINE L1 4914 5052 -1163 2680 199 45 12 chr12 26288577 26289316 -117993173 + L1ME1 LINE L1 5210 5979 -256 1184 260 67 23 chr12 26289316 26289662 -117992827 - MLT1A1 LTR MaLR -4 361 1 567 246 45 61 chr12 26289662 26289926 -117992563 + L1ME1 LINE L1 5971 6230 -5 465 242 20 13 chr12 26290055 26290204 -117992285 + MER103 DNA DNA 1 150 -16 878 150 8 0 chr12 26290368 26290501 -117991988 + AluJo SINE Alu 1 134 -178 5747 169 43 23 chr12 26290651 26290920 -117991569 - L1MC2 LINE L1 -9 6335 6073 1652 167 3 43 chr12 26290920 26291219 -117991270 + AluJo SINE Alu 15 301 -11 5747 169 43 23 chr12 26291219 26292648 -117989841 - L1MC2 LINE L1 -271 6073 4602 1943 144 17 0 chr12 26292648 26292939 -117989550 - AluSx SINE Alu -16 296 1 5747 169 43 23 chr12 26292939 26293011 -117989478 - L1MC2 LINE L1 -1742 4602 4533 200 290 81 0 chr12 26293309 26293371 -117989118 + L2 LINE L2 3206 3272 0 403 308 89 0 chr12 26294669 26294815 -117987674 + MIR3 SINE MIR 44 202 -6 273 300 70 0 chr12 26294948 26295048 -117987441 - MIR3 SINE MIR -8 200 94 1920 220 149 24 chr12 26295715 26296334 -117986155 - L1ME3A LINE L1 -5 6165 5470 1799 154 3 25 chr12 26297156 26297565 -117984924 - AluJo SINE Alu 0 402 1 268 240 117 76 chr12 26298213 26298384 -117984105 - MIR SINE MIR 0 262 85 1766 28 5 0 chr12 26298691 26298903 -117983586 + L1PA5 LINE L1 5940 6152 -2 208 339 37 46 chr12 26299457 26299566 -117982923 + L3b LINE CR1 1296 1403 -180 348 271 62 62 chr12 26299566 26299620 -117982869 - MIR SINE MIR -3 259 206 1633 144 0 115 chr12 26299620 26299959 -117982530 - AluJo SINE Alu -2 300 1 348 271 62 62 chr12 26299959 26300081 -117982408 - MIR SINE MIR -55 207 83 1700 199 0 0 chr12 26300191 26300488 -117982001 + AluJb SINE Alu 1 297 -15 424 208 66 28 chr12 26300501 26300607 -117981882 + MER103 DNA DNA 13 122 -44 1750 119 128 16 chr12 26301568 26301887 -117980602 - MER47A DNA MER2_type 0 366 12 1883 150 0 17 chr12 26301929 26302229 -117980260 - AluSx SINE Alu -17 295 1 230 300 91 36 chr12 26302377 26302487 -117980002 + L2 LINE L2 3198 3313 0 2646 51 0 0 chr12 26302674 26302985 -117979504 + AluY SINE Alu 1 311 0 207 0 0 0 chr12 26303978 26304001 -117978488 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2222 96 3 0 chr12 26304038 26304340 -117978149 - AluSp SINE Alu 0 303 1 322 206 112 47 chr12 26305998 26306105 -117976384 + MIR SINE MIR 2 115 -147 644 213 82 39 chr12 26306188 26306395 -117976094 + MIR SINE MIR 44 259 -3 253 200 62 0 chr12 26307326 26307406 -117975083 + (TA)n Simple_repeat Simple_repeat 1 85 0 1923 158 0 3 chr12 26307734 26308026 -117974463 + AluJo SINE Alu 1 291 -21 204 191 16 32 chr12 26308050 26308113 -117974376 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 627 190 22 10 chr12 26308114 26308337 -117974152 - 7SK RNA RNA -5 188 1 285 284 0 0 chr12 26308804 26308871 -117973618 + L2 LINE L2 3245 3311 -2 255 426 25 0 chr12 26310581 26310703 -117971786 - L2 LINE L2 -12 3260 3136 2175 131 0 3 chr12 26310706 26311019 -117971470 + AluSx SINE Alu 1 312 0 615 293 17 6 chr12 26311213 26311387 -117971102 - MIR SINE MIR -10 252 77 1969 130 0 0 chr12 26311413 26311682 -117970807 + AluSx SINE Alu 3 271 -41 505 247 74 12 chr12 26311707 26311869 -117970620 + MER3 DNA MER1_type 1 125 -84 531 333 36 0 chr12 26312401 26312566 -117969923 - MIR SINE MIR -71 191 21 217 274 55 0 chr12 26313501 26313574 -117968915 - MIR SINE MIR -10 252 176 943 238 59 4 chr12 26313720 26313976 -117968513 + LTR16A LTR ERVL 181 450 0 317 258 34 83 chr12 26313987 26314133 -117968356 - MIR SINE MIR -63 145 20 924 138 0 0 chr12 26314272 26314402 -117968087 - FLAM_C SINE Alu -13 130 1 1484 201 18 4 chr12 26314485 26314764 -117967725 + AluJo SINE Alu 5 287 -25 216 111 0 0 chr12 26315243 26315279 -117967210 + (TG)n Simple_repeat Simple_repeat 1 36 0 219 69 0 0 chr12 26315279 26315308 -117967181 + (GA)n Simple_repeat Simple_repeat 2 30 0 187 209 93 0 chr12 26315668 26315711 -117966778 - L2 LINE L2 -8 3305 3259 2062 142 0 3 chr12 26315811 26316114 -117966375 + AluSx SINE Alu 1 302 -10 646 272 78 94 chr12 26316142 26316576 -117965913 - Charlie8 DNA MER1_type -1987 430 4 188 274 0 20 chr12 26316578 26316629 -117965860 + L3b LINE CR1 1531 1580 -3 344 233 14 0 chr12 26317184 26317257 -117965232 + MIR SINE MIR 74 147 -115 885 73 0 0 chr12 26317288 26317397 -117965092 + FLAM_C SINE Alu 3 111 -32 213 39 0 0 chr12 26317398 26317424 -117965065 + (TC)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr12 26318231 26318259 -117964230 + AT_rich Low_complexity Low_complexity 1 28 0 591 27 0 0 chr12 26319521 26319594 -117962895 + (CA)n Simple_repeat Simple_repeat 2 74 0 2478 51 0 13 chr12 26320283 26320595 -117961894 - AluY SINE Alu -3 308 1 369 314 48 93 chr12 26320889 26321137 -117961352 - L2 LINE L2 -3 3269 3033 571 286 47 21 chr12 26321150 26321342 -117961147 + L2 LINE L2 3115 3311 -2 797 323 89 34 chr12 26321374 26321934 -117960555 - L2 LINE L2 -509 2805 2215 198 118 0 0 chr12 26322639 26322673 -117959816 + (TC)n Simple_repeat Simple_repeat 1 34 0 3745 115 36 28 chr12 26322710 26323312 -117959177 - MER4B LTR ERV1 0 610 4 21 57 0 0 chr12 26323424 26323459 -117959030 + AT_rich Low_complexity Low_complexity 1 35 0 257 390 67 18 chr12 26323606 26323829 -117958660 - L2 LINE L2 -1379 1935 1702 376 252 214 8 chr12 26325266 26325397 -117957092 - MER5A DNA MER1_type -6 183 26 365 286 211 0 chr12 26327955 26328154 -117954335 - MIR SINE MIR -1 261 21 2543 23 7 3 chr12 26328319 26328618 -117953871 + AluY SINE Alu 1 300 -11 790 252 109 53 chr12 26328838 26329552 -117952937 + L1ME3A LINE L1 5178 5933 -237 709 102 0 0 chr12 26329744 26329852 -117952637 - L1MB3 LINE L1 -1 6182 6075 21 36 0 0 chr12 26330958 26330986 -117951503 + AT_rich Low_complexity Low_complexity 1 28 0 354 128 51 34 chr12 26331590 26331707 -117950782 + (CATATA)n Simple_repeat Simple_repeat 1 119 0 22 70 0 0 chr12 26334997 26335040 -117947449 + AT_rich Low_complexity Low_complexity 1 43 0 385 313 177 35 chr12 26336771 26337139 -117945350 - L2 LINE L2 -549 2765 2346 2497 164 16 5 chr12 26337478 26337911 -117944578 + L1PA16 LINE L1 5729 6166 0 194 351 0 0 chr12 26338522 26338579 -117943910 - L2 LINE L2 -8 3264 3208 200 295 66 0 chr12 26338641 26338702 -117943787 - MIR SINE MIR 0 262 198 1189 157 35 88 chr12 26338812 26338857 -117943632 - L1MB5 LINE L1 0 6174 6128 1995 75 0 61 chr12 26338857 26339136 -117943353 + AluY SINE Alu 37 298 -13 1189 157 35 88 chr12 26339136 26339409 -117943080 - L1MB5 LINE L1 -46 6128 5873 712 157 0 46 chr12 26339489 26339642 -117942847 + L1PA16 LINE L1 5696 5841 -325 * 2373 199 18 26 chr12 26339635 26340208 -117942281 - L1MB5 LINE L1 -298 5876 5309 211 192 231 0 chr12 26340209 26340261 -117942228 + MIR SINE MIR 167 230 -32 204 382 182 18 chr12 26341398 26341563 -117940926 - L3b LINE CR1 -6 1577 1386 1951 115 11 0 chr12 26341983 26342253 -117940236 + AluSq SINE Alu 1 273 -40 59 15 0 0 chr12 26342253 26342319 -117940170 + AT_rich Low_complexity Low_complexity 1 66 0 983 169 17 39 chr12 26342319 26342497 -117939992 + AluJb SINE Alu 122 295 -17 25 0 0 0 chr12 26342498 26342523 -117939966 + AT_rich Low_complexity Low_complexity 1 25 0 29 60 0 0 chr12 26342998 26343048 -117939441 + AT_rich Low_complexity Low_complexity 1 50 0 251 282 70 70 chr12 26343249 26343356 -117939133 - MER5A DNA MER1_type -5 184 75 1990 159 3 0 chr12 26343356 26343657 -117938832 - AluJb SINE Alu -10 302 1 251 282 70 70 chr12 26343657 26343691 -117938798 - MER5A DNA MER1_type -113 76 43 1072 291 53 28 chr12 26343992 26344139 -117938350 + LTR16C LTR ERVL 4 146 -345 1753 177 26 7 chr12 26344139 26344444 -117938045 + AluJo SINE Alu 1 311 -1 1072 291 53 28 chr12 26344444 26344729 -117937760 + LTR16C LTR ERVL 146 447 -44 2336 107 3 0 chr12 26344729 26345029 -117937460 - AluSc SINE Alu -8 301 1 21 0 0 0 chr12 26345038 26345059 -117937430 + AT_rich Low_complexity Low_complexity 1 21 0 1704 61 22 13 chr12 26345065 26345296 -117937193 - L1PA7 LINE L1 0 6154 5922 314 167 0 0 chr12 26345298 26345346 -117937143 + LTR16C LTR ERVL 436 483 -8 23 0 0 0 chr12 26345672 26345695 -117936794 + AT_rich Low_complexity Low_complexity 1 23 0 1389 72 0 0 chr12 26345740 26345907 -117936582 + AluYa5 SINE Alu 133 299 -12 695 197 46 83 chr12 26345998 26346216 -117936273 - MER63A DNA MER1_type 0 210 1 829 273 148 11 chr12 26346404 26346770 -117935719 + Charlie2a DNA MER1_type 59 474 -2308 799 193 67 33 chr12 26346769 26347039 -117935450 + Charlie2a DNA MER1_type 734 1012 -1850 * 370 252 0 19 chr12 26347045 26347152 -117935337 + Charlie2a DNA MER1_type 2748 2852 -10 2007 152 0 0 chr12 26350594 26350890 -117931599 - AluJb SINE Alu -16 296 1 202 324 0 0 chr12 26351868 26351934 -117930555 + MIR SINE MIR 88 131 -77 1946 114 63 23 chr12 26351968 26352267 -117930222 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 26352357 26352378 -117930111 + AT_rich Low_complexity Low_complexity 1 21 0 2062 137 3 0 chr12 26352922 26353215 -117929274 - AluJo SINE Alu -17 295 2 2174 204 39 0 chr12 26354108 26354569 -117927920 - MLT1E2 LTR MaLR -11 615 137 1349 80 0 60 chr12 26354696 26354897 -117927592 + AluSg/x SINE Alu 122 310 0 1623 80 38 0 chr12 26355117 26355356 -117927133 - L1MA1 LINE L1 0 6302 6055 960 190 6 0 chr12 26356469 26356627 -117925862 + AluJb SINE Alu 137 295 -17 449 274 137 25 chr12 26357353 26357557 -117924932 + MIR SINE MIR 24 250 -12 232 339 80 9 chr12 26357735 26357847 -117924642 - MIR3 SINE MIR -2 206 87 450 280 53 0 chr12 26358476 26358608 -117923881 - MIR SINE MIR -55 207 69 187 260 80 0 chr12 26358659 26358709 -117923780 - MER5A DNA MER1_type 0 189 136 622 228 0 16 chr12 26358724 26358847 -117923642 + FLAM_A SINE Alu 1 121 -12 300 324 0 27 chr12 26359509 26359620 -117922869 + MIR SINE MIR 68 175 -87 21 57 0 0 chr12 26359903 26359938 -117922551 + AT_rich Low_complexity Low_complexity 1 35 0 1740 185 7 10 chr12 26359954 26360252 -117922237 - AluJo SINE Alu -15 297 1 224 138 64 11 chr12 26360262 26360356 -117922133 + (TA)n Simple_repeat Simple_repeat 1 99 0 245 362 63 35 chr12 26361059 26361374 -117921115 + L2 LINE L2 2330 2653 -661 335 274 21 0 chr12 26362364 26362459 -117920030 - MIR SINE MIR -102 160 64 495 358 6 6 chr12 26363922 26364084 -117918405 - MIR3 SINE MIR -13 195 34 298 234 162 9 chr12 26364086 26364197 -117918292 - MIR SINE MIR 0 262 135 258 217 58 0 chr12 26364534 26364603 -117917886 + L1ME LINE L1 1107 1179 -5193 454 265 104 25 chr12 26364614 26365128 -117917361 + L1ME LINE L1 1136 1683 -4701 669 312 66 41 chr12 26365176 26365330 -117917159 + L1ME LINE L1 2175 2324 -4239 691 193 0 30 chr12 26365330 26365465 -117917024 + FLAM_C SINE Alu 1 131 -2 669 312 66 41 chr12 26365465 26365704 -117916785 + L1ME LINE L1 2324 2578 -3985 338 291 27 6 chr12 26366078 26366234 -117916255 + L1ME3A LINE L1 5961 6119 -50 216 220 17 0 chr12 26366243 26366302 -117916187 + (TA)n Simple_repeat Simple_repeat 1 60 0 473 250 88 14 chr12 26366809 26366957 -117915532 - MIR SINE MIR -57 205 47 998 235 65 9 chr12 26368942 26369172 -117913317 + MIR SINE MIR 20 262 0 1863 130 3 52 chr12 26369296 26369603 -117912886 + AluJb SINE Alu 11 302 -10 860 160 7 0 chr12 26370233 26370383 -117912106 - MER3 DNA MER1_type -57 152 2 320 266 67 14 chr12 26370479 26370621 -117911868 + L1MC/D LINE L1 5679 5824 -379 515 238 8 16 chr12 26370621 26370743 -117911746 + MER21B LTR ERV1 329 449 -414 239 147 120 27 chr12 26370739 26370814 -117911675 - Zaphod DNA AcHobo -148 3883 3802 * 2247 117 0 3 chr12 26370821 26371120 -117911369 + AluSx SINE Alu 1 298 -14 21 57 0 0 chr12 26371257 26371292 -117911197 + AT_rich Low_complexity Low_complexity 1 35 0 251 262 0 0 chr12 26371367 26371428 -117911061 - MER96 DNA MER1_type? -114 61 1 2305 109 0 13 chr12 26371521 26371832 -117910657 - AluSx SINE Alu -5 307 1 28 29 0 0 chr12 26373149 26373184 -117909305 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr12 26374188 26374217 -117908272 + AT_rich Low_complexity Low_complexity 1 29 0 230 236 124 67 chr12 26374567 26374656 -117907833 + MIR3 SINE MIR 109 202 -6 1597 176 50 4 chr12 26374728 26375006 -117907483 - AluJo SINE Alu -21 291 1 1079 302 45 36 chr12 26375110 26375692 -117906797 - MLT1K LTR MaLR 0 588 2 2291 98 3 0 chr12 26375860 26376157 -117906332 - AluSp SINE Alu -15 298 1 1850 158 14 4 chr12 26376293 26376616 -117905873 + AluJb SINE Alu 1 301 -11 1945 144 20 7 chr12 26377571 26377877 -117904612 + AluSx SINE Alu 1 310 -2 213 264 0 0 chr12 26377913 26377985 -117904504 + (TA)n Simple_repeat Simple_repeat 2 73 0 473 258 45 67 chr12 26378461 26378639 -117903850 + MIR SINE MIR 8 181 -81 338 362 28 11 chr12 26378986 26379163 -117903326 - L3b LINE CR1 -49 1534 1355 1820 155 0 20 chr12 26379168 26379472 -117903017 + AluJo SINE Alu 1 298 -14 646 214 71 18 chr12 26379776 26379944 -117902545 - MER5B DNA MER1_type -1 177 1 28 0 0 0 chr12 26380395 26380423 -117902066 + AT_rich Low_complexity Low_complexity 1 28 0 1885 142 0 14 chr12 26380423 26380719 -117901770 - AluJb SINE Alu -2 310 19 354 271 42 42 chr12 26380909 26381075 -117901414 - L2 LINE L2 -5 3308 3143 226 296 52 87 chr12 26381682 26381797 -117900692 - L2 LINE L2 -8 3264 3154 2639 151 13 0 chr12 26382550 26382948 -117899541 + MER57A LTR ERV1 1 403 0 183 42 0 0 chr12 26383015 26383039 -117899450 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1254 155 21 0 chr12 26383041 26383235 -117899254 - AluJo SINE Alu -29 283 86 1480 123 110 72 chr12 26383497 26383789 -117898700 - AluSq SINE Alu -10 303 1 2117 93 14 0 chr12 26385153 26385470 -117897019 + AluSx SINE Alu 1 321 0 869 208 6 0 chr12 26385596 26385764 -117896725 + FRAM SINE Alu 1 168 -8 2576 54 0 16 chr12 26385815 26386131 -117896358 + AluY SINE Alu 1 311 0 2161 142 0 0 chr12 26386181 26386490 -117895999 + AluSx SINE Alu 1 309 -3 283 358 78 36 chr12 26386499 26386834 -117895655 - L2 LINE L2 -798 2516 2168 21 0 0 0 chr12 26387556 26387577 -117894912 + AT_rich Low_complexity Low_complexity 1 21 0 212 298 96 11 chr12 26387923 26388017 -117894472 + L2 LINE L2 3211 3312 -1 240 385 195 5 chr12 26388601 26388801 -117893688 - L2 LINE L2 -50 3222 2985 209 301 32 32 chr12 26389136 26389229 -117893260 - L2 LINE L2 -650 2664 2572 910 235 111 37 chr12 26389541 26390110 -117892379 + L2 LINE L2 2688 3313 0 344 206 0 0 chr12 26390984 26391052 -117891437 - MER94 DNA DNA -63 71 4 688 335 77 11 chr12 26391095 26391471 -117891018 - L1MC/D LINE L1 -2028 5780 5380 2370 107 0 0 chr12 26392210 26392520 -117889969 + AluSx SINE Alu 3 312 0 464 233 167 6 chr12 26393932 26394112 -117888377 + MIR SINE MIR 54 262 0 413 339 49 27 chr12 26394261 26394485 -117888004 + L1ME LINE L1 5514 5742 -379 1915 148 0 0 chr12 26394533 26394817 -117887672 + AluJb SINE Alu 4 287 -25 1761 177 21 0 chr12 26394862 26395145 -117887344 + AluJb SINE Alu 11 299 -13 7020 205 89 61 chr12 26395146 26396595 -117885894 + L1MDa LINE L1 74 1599 -4941 1583 194 0 7 chr12 26396595 26396883 -117885606 - AluJb SINE Alu -18 294 9 7020 205 89 61 chr12 26396883 26397504 -117884985 + L1MDa LINE L1 1599 2201 -4339 1983 214 76 13 chr12 26397530 26398072 -117884417 + L1MB8 LINE L1 3628 4203 -1943 2946 169 33 76 chr12 26398136 26398181 -117884308 + L1MB8 LINE L1 4613 4658 -1488 1788 155 3 3 chr12 26398181 26398465 -117884024 + AluSx SINE Alu 1 284 -28 456 19 0 0 chr12 26398465 26398518 -117883971 + (TA)n Simple_repeat Simple_repeat 2 54 0 2946 169 33 76 chr12 26398518 26399207 -117883282 + L1MB8 LINE L1 4656 5316 -830 2307 102 0 9 chr12 26399222 26399537 -117882952 - AluSq SINE Alu -1 312 1 1263 120 65 132 chr12 26399563 26399711 -117882778 + AluJb SINE Alu 1 117 -195 273 57 0 0 chr12 26399711 26399746 -117882743 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1263 120 65 132 chr12 26399746 26399922 -117882567 + AluJb SINE Alu 117 303 -9 933 153 11 17 chr12 26399926 26400102 -117882387 + L1MB8 LINE L1 5733 5907 -271 3153 29 0 0 chr12 26400102 26400449 -117882040 + L1PA4 LINE L1 5803 6152 -3 1256 173 3 93 chr12 26400464 26400542 -117881947 + L1MB8 LINE L1 5894 5977 -201 1379 142 16 199 chr12 26400542 26400908 -117881581 + AluJb SINE Alu 1 299 -3 1256 173 3 93 chr12 26400908 26401142 -117881347 + L1MB8 LINE L1 5977 6178 0 21 36 0 0 chr12 26401382 26401410 -117881079 + AT_rich Low_complexity Low_complexity 1 28 0 596 269 11 119 chr12 26401946 26402085 -117880404 - MIR SINE MIR 0 262 168 1668 187 4 0 chr12 26402085 26402363 -117880126 - AluJo SINE Alu -33 279 1 596 269 11 119 chr12 26402363 26402509 -117879980 - MIR SINE MIR -94 168 8 210 254 0 0 chr12 26403573 26403640 -117878849 + GA-rich Low_complexity Low_complexity 2 68 0 3401 118 114 7 chr12 26405186 26405737 -117876752 - MER4B LTR ERV1 0 610 1 22 70 0 0 chr12 26405856 26405899 -117876590 + AT_rich Low_complexity Low_complexity 1 43 0 241 234 91 39 chr12 26406350 26406427 -117876062 + L2 LINE L2 3186 3266 -6 189 0 0 0 chr12 26406780 26406801 -117875688 + (CA)n Simple_repeat Simple_repeat 2 22 0 430 362 19 10 chr12 26406848 26407055 -117875434 + L2 LINE L2 2105 2313 -1001 259 24 24 24 chr12 26407088 26407129 -117875360 + (TTA)n Simple_repeat Simple_repeat 2 42 0 863 132 0 0 chr12 26407129 26407250 -117875239 - FLAM_C SINE Alu -22 121 1 779 202 161 16 chr12 26407399 26407592 -117874897 + MER58A DNA MER1_type 4 224 0 2216 225 13 47 chr12 26407787 26407871 -117874618 + LTR40a LTR ERVL 1 86 -433 2340 82 0 3 chr12 26407871 26408174 -117874315 - AluY SINE Alu -9 302 1 2216 225 13 47 chr12 26408174 26408626 -117873863 + LTR40a LTR ERVL 86 519 0 187 424 40 0 chr12 26409045 26409144 -117873345 + L2 LINE L2 3123 3225 -47 201 129 0 0 chr12 26409166 26409197 -117873292 + (AACTG)n Simple_repeat Simple_repeat 5 35 0 23 0 0 0 chr12 26409234 26409257 -117873232 + AT_rich Low_complexity Low_complexity 1 23 0 2267 114 0 7 chr12 26409263 26409570 -117872919 - AluSx SINE Alu -7 305 1 2158 110 31 0 chr12 26409832 26410122 -117872367 + AluSx SINE Alu 1 299 -13 2345 100 7 0 chr12 26410158 26410468 -117872021 - AluSx SINE Alu 0 312 1 1279 181 80 16 chr12 26410897 26411411 -117871078 + LTR29 LTR ERV1 1 595 0 4051 139 19 25 chr12 26412116 26412755 -117869734 + MER41B LTR ERV1 1 635 0 311 182 15 0 chr12 26412828 26412894 -117869595 + MER52A LTR ERV1 1 67 -1688 5273 193 139 62 chr12 26413066 26414667 -117867822 + MER52A LTR ERV1 31 1755 0 1731 130 82 4 chr12 26414816 26415085 -117867404 + AluSx SINE Alu 1 290 -22 1347 153 0 44 chr12 26415610 26415839 -117866650 - AluJo SINE Alu -2 310 92 4925 127 53 21 chr12 26415953 26416708 -117865781 + MER4E LTR ERV1 1 779 0 226 293 0 0 chr12 26417771 26417829 -117864660 - MIR SINE MIR -122 140 83 275 230 90 40 chr12 26417891 26417991 -117864498 + MER46C DNA MER2_type 2 106 -232 1914 140 11 3 chr12 26417992 26418277 -117864212 + AluSx SINE Alu 1 287 -25 1744 178 21 0 chr12 26418322 26418603 -117863886 + AluJb SINE Alu 11 297 -15 317 333 14 27 chr12 26418780 26418927 -117863562 + L1MDa LINE L1 273 417 -6123 26 30 0 0 chr12 26419129 26419162 -117863327 + GC_rich Low_complexity Low_complexity 1 33 0 222 62 0 0 chr12 26419431 26419463 -117863026 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 1713 113 73 0 chr12 26419466 26419713 -117862776 - AluSq SINE Alu -48 265 1 305 243 19 29 chr12 26419849 26419952 -117862537 - MLT1L LTR MaLR -22 593 492 2159 96 21 10 chr12 26420567 26420858 -117861631 + AluSg SINE Alu 1 294 -16 2163 127 7 0 chr12 26421089 26421396 -117861093 + AluSp SINE Alu 1 309 -4 4963 211 30 11 chr12 26421719 26422768 -117859721 + L1PBa LINE L1 374 1442 -5421 311 143 0 0 chr12 26423249 26423298 -117859191 + HSMAR2 DNA Mariner 828 876 -426 895 173 0 0 chr12 26423344 26423477 -117859012 + FLAM_C SINE Alu 1 133 0 576 323 97 66 chr12 26423508 26424118 -117858371 - L2 LINE L2 -910 2404 1772 1942 151 0 16 chr12 26424118 26424429 -117858060 + AluJb SINE Alu 1 306 -6 576 323 97 66 chr12 26424429 26424458 -117858031 - L2 LINE L2 -1542 1772 1745 441 354 107 35 chr12 26424815 26425416 -117857073 - L2 LINE L2 -428 2886 2243 473 317 147 33 chr12 26425492 26426037 -117856452 - L2 LINE L2 -1970 1344 738 2184 121 7 0 chr12 26426270 26426576 -117855913 - AluSp SINE Alu -4 309 2 24 32 0 0 chr12 26426576 26426607 -117855882 + AT_rich Low_complexity Low_complexity 1 31 0 2454 202 86 77 chr12 26426630 26427349 -117855140 + LTR8A LTR ERV1 2 727 0 2028 134 3 0 chr12 26427404 26427694 -117854795 - AluSx SINE Alu -21 291 1 1961 149 9 25 chr12 26428383 26428699 -117853790 - AluSx SINE Alu 0 312 2 336 24 0 0 chr12 26430281 26430322 -117852167 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 2116 129 0 13 chr12 26430357 26430667 -117851822 + AluSx SINE Alu 1 306 -6 1959 138 30 0 chr12 26431012 26431309 -117851180 + AluSx SINE Alu 1 306 -6 1058 152 5 71 chr12 26431899 26431972 -117850517 + MER5A DNA MER1_type 2 78 -111 897 157 0 30 chr12 26431972 26432106 -117850383 + FLAM_C SINE Alu 2 131 -2 1058 152 5 71 chr12 26432106 26432230 -117850259 + MER5A DNA MER1_type 78 186 -3 1847 155 0 17 chr12 26432431 26432728 -117849761 - AluSx SINE Alu -20 292 1 1472 209 3 14 chr12 26432728 26433024 -117849465 + AluJo SINE Alu 17 309 -3 604 211 60 15 chr12 26434431 26434564 -117847925 - AluJo SINE Alu -56 256 118 1583 196 0 46 chr12 26434646 26434972 -117847517 - AluSx SINE Alu 0 312 2 306 226 32 43 chr12 26435989 26436082 -117846407 - MER58B DNA MER1_type -8 333 116 965 114 0 15 chr12 26436083 26436215 -117846274 - AluJo SINE Alu -172 130 1 642 183 98 20 chr12 26436215 26436368 -117846121 - MER58B DNA MER1_type -176 165 1 826 174 0 43 chr12 26436434 26436447 -117846042 - AluJo SINE Alu -170 132 120 423 0 0 0 chr12 26436447 26436494 -117845995 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 826 174 0 43 chr12 26436494 26436618 -117845871 - AluJo SINE Alu -182 120 1 809 264 75 45 chr12 26438228 26438653 -117843836 - MLT1J1 LTR MaLR -1 445 8 2374 133 128 10 chr12 26438712 26439095 -117843394 + MSTA LTR MaLR 1 428 0 1436 182 97 0 chr12 26439476 26439734 -117842755 - AluJb SINE Alu -19 283 1 2560 72 0 0 chr12 26439744 26440049 -117842440 - AluSc SINE Alu -4 305 1 440 271 40 53 chr12 26441542 26441693 -117840796 + MIR3 SINE MIR 55 203 -5 230 280 11 32 chr12 26442493 26442586 -117839903 - MIR SINE MIR -72 190 100 1053 227 14 5 chr12 26444531 26444738 -117837751 + MIR SINE MIR 27 235 -27 209 241 152 0 chr12 26444837 26444916 -117837573 - MIR SINE MIR -30 232 142 209 182 18 0 chr12 26444966 26445021 -117837468 + CT-rich Low_complexity Low_complexity 3 58 0 2287 92 0 0 chr12 26445021 26445314 -117837175 - AluY SINE Alu -18 293 1 867 181 18 23 chr12 26445314 26445485 -117837004 + MSTB LTR MaLR 203 372 -54 298 292 45 0 chr12 26445505 26445594 -117836895 - MIR SINE MIR -133 129 37 204 40 0 0 chr12 26445991 26446016 -117836473 + (A)n Simple_repeat Simple_repeat 1 25 0 907 166 0 0 chr12 26446401 26446540 -117835949 + AluJo SINE Alu 1 139 -173 42 0 0 0 chr12 26446557 26446599 -117835890 + AT_rich Low_complexity Low_complexity 1 42 0 467 189 112 14 chr12 26447354 26447497 -117834992 + LTR16A1 LTR ERVL 119 275 -182 416 143 0 2 chr12 26447497 26447570 -117834919 - MSTB1 LTR MaLR 0 432 325 2538 138 19 33 chr12 26447589 26448015 -117834474 - MSTB1 LTR MaLR -12 420 1 592 266 43 53 chr12 26448016 26448204 -117834285 + LTR16A1 LTR ERVL 272 457 0 21 0 0 0 chr12 26448721 26448742 -117833747 + AT_rich Low_complexity Low_complexity 1 21 0 272 158 0 0 chr12 26449669 26449707 -117832782 + Alu SINE Alu 1 38 -261 4019 196 10 26 chr12 26449707 26449804 -117832685 - MER57A-int LTR ERV1 -915 6622 6525 2231 125 3 0 chr12 26449804 26450109 -117832380 - AluSx SINE Alu -6 306 1 4019 196 10 26 chr12 26450109 26450822 -117831667 - MER57A-int LTR ERV1 -1012 6525 5825 6199 163 76 77 chr12 26451125 26451967 -117830522 - MER57A-int LTR ERV1 -1587 4744 3903 189 0 0 0 chr12 26451967 26451988 -117830501 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1625 164 0 45 chr12 26451988 26452280 -117830209 - AluJb SINE Alu -33 279 1 6199 163 76 77 chr12 26452280 26453129 -117829360 - MER57A-int LTR ERV1 -2427 3904 3589 2206 106 0 3 chr12 26453129 26453422 -117829067 - AluSx SINE Alu -20 292 1 6199 163 76 77 chr12 26453422 26453547 -117828942 - MER57A-int LTR ERV1 -2742 3589 3465 587 239 123 26 chr12 26453521 26453571 -117828918 - MER57A-int LTR ERV1 -2888 2048 2004 * 1876 149 14 3 chr12 26453571 26453860 -117828629 - AluJb SINE Alu -20 292 1 587 239 123 26 chr12 26453860 26454119 -117828370 - MER57A-int LTR ERV1 -2932 2004 1709 982 178 18 200 chr12 26454232 26454435 -117828054 - MER57A-int LTR ERV1 -2878 3453 3215 1960 137 22 0 chr12 26454435 26454747 -117827742 + AluSq SINE Alu 1 318 0 982 178 18 200 chr12 26454747 26454822 -117827667 - MER57A-int LTR ERV1 -3116 3215 3128 1212 178 50 157 chr12 26454822 26454950 -117827539 + AluJo SINE Alu 1 141 -161 243 0 0 0 chr12 26454950 26454977 -117827512 + (TA)n Simple_repeat Simple_repeat 2 28 0 1212 178 50 157 chr12 26454977 26455186 -117827303 + AluJo SINE Alu 141 302 0 982 178 18 200 chr12 26455186 26455306 -117827183 - MER57A-int LTR ERV1 -3203 3128 3142 2377 197 86 99 chr12 26455306 26456043 -117826446 - LTR8A LTR ERV1 0 727 1 982 178 18 200 chr12 26456043 26456097 -117826392 - MER57A-int LTR ERV1 -3188 3143 3081 354 215 0 56 chr12 26456108 26456215 -117826274 - MER57A-int LTR ERV1 -3724 1399 1299 277 183 61 37 chr12 26456190 26456272 -117826217 - MER57A-int LTR ERV1 -3678 1193 1110 * 2950 9 0 0 chr12 26456276 26456592 -117825897 - AluYb8 SINE Alu -2 316 1 722 220 136 44 chr12 26456647 26456897 -117825592 - MER34C LTR ERV1 -158 427 155 497 277 0 21 chr12 26456897 26457038 -117825451 - MER57A-int LTR ERV1 -4135 988 851 2239 123 0 19 chr12 26457045 26457361 -117825128 - AluSg SINE Alu 0 310 1 1624 161 69 11 chr12 26457441 26457715 -117824774 - AluJo SINE Alu -14 298 9 3761 195 11 71 chr12 26457751 26458129 -117824360 - MER57A-int LTR ERV1 -6688 849 450 2185 96 3 0 chr12 26458129 26458441 -117824048 - AluSq SINE Alu 0 313 1 3761 195 11 71 chr12 26458441 26458964 -117823525 - MER57A-int LTR ERV1 -7087 450 1 2308 170 21 0 chr12 26458964 26459352 -117823137 - MER57A LTR ERV1 0 403 8 1794 187 142 3 chr12 26459758 26460132 -117822357 - MSTB LTR MaLR 0 426 1 926 163 112 86 chr12 26460521 26460754 -117821735 + MLT1D LTR MaLR 204 442 -63 2503 65 7 0 chr12 26461503 26461809 -117820680 - AluSp SINE Alu -5 308 1 244 258 263 5 chr12 26461816 26462002 -117820487 - L2 LINE L2 -1305 2009 1776 352 273 182 57 chr12 26463193 26463612 -117818877 + L1M2 LINE L1 773 1401 -5448 44 106 0 0 chr12 26463640 26463810 -117818679 + GC_rich Low_complexity Low_complexity 1 170 0 382 254 143 11 chr12 26466220 26466409 -117816080 + MIR SINE MIR 37 250 -12 257 280 192 63 chr12 26466413 26467244 -117815245 + L2 LINE L2 2328 3313 0 881 161 8 0 chr12 26467268 26467398 -117815091 - FLAM_A SINE Alu -2 131 1 22 0 0 0 chr12 26467649 26467671 -117814818 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 26469600 26469625 -117812864 + AT_rich Low_complexity Low_complexity 1 25 0 2324 80 3 0 chr12 26469625 26469911 -117812578 - AluY SINE Alu -24 287 1 2660 221 54 25 chr12 26469920 26470030 -117812459 - L1ME1 LINE L1 -5 6161 6056 1903 134 34 0 chr12 26470030 26470322 -117812167 - AluSx SINE Alu -6 306 5 2660 221 54 25 chr12 26470322 26470893 -117811596 - L1ME1 LINE L1 -110 6056 5460 418 164 0 27 chr12 26470921 26470994 -117811495 - AluJo SINE Alu -12 300 230 971 170 16 33 chr12 26470995 26471177 -117811312 - AluJo SINE Alu -133 179 1 2507 171 61 2 chr12 26471178 26471738 -117810751 - L1ME1 LINE L1 -729 5437 4849 407 299 159 19 chr12 26472715 26472986 -117809503 + L2 LINE L2 1713 2021 -1293 2276 88 0 10 chr12 26472990 26473314 -117809175 - AluSx SINE Alu 0 312 1 947 285 91 18 chr12 26473371 26473885 -117808604 - L2 LINE L2 -62 3251 2713 722 233 119 10 chr12 26473899 26474101 -117808388 + MIR SINE MIR 12 235 -27 505 227 108 49 chr12 26474135 26474338 -117808151 - L2 LINE L2 -610 2704 2490 259 217 132 70 chr12 26474400 26474529 -117807960 + MER20B DNA MER1_type 1 137 -646 212 319 217 13 chr12 26475145 26475302 -117807187 + L2 LINE L2 2554 2742 -572 200 94 0 31 chr12 26476241 26476273 -117806216 + (GAAAA)n Simple_repeat Simple_repeat 1 31 0 25 65 0 0 chr12 26477018 26477064 -117805425 + AT_rich Low_complexity Low_complexity 1 46 0 446 267 67 29 chr12 26477111 26477321 -117805168 + L1ME4a LINE L1 5698 5915 -206 595 202 81 50 chr12 26477527 26477717 -117804772 - L1ME3A LINE L1 -166 5998 5806 824 139 0 0 chr12 26477718 26477840 -117804649 - FRAM SINE Alu -18 158 37 329 305 6 85 chr12 26478022 26478186 -117804303 + MIR SINE MIR 25 187 -74 2046 174 25 8 chr12 26478254 26478611 -117803878 + MLT1A1 LTR MaLR 1 363 -2 331 331 92 48 chr12 26479713 26479985 -117802504 - L2 LINE L2 -157 3115 2832 2627 137 42 148 chr12 26480765 26481474 -117801015 + MER51A LTR ERV1 1 634 0 181 274 36 95 chr12 26483596 26483680 -117798809 + L3 LINE CR1 994 1072 -505 193 272 86 95 chr12 26483889 26484121 -117798368 - L2 LINE L2 -1207 2107 1878 742 230 119 25 chr12 26484181 26484416 -117798073 - MIR SINE MIR -4 258 2 2258 153 42 39 chr12 26485812 26486270 -117796219 - LTR32 LTR ERVL 0 471 13 612 305 96 11 chr12 26486796 26487078 -117795411 + L3 LINE CR1 637 942 -635 473 299 132 58 chr12 26487100 26488050 -117794439 + L1MEd LINE L1 4 1023 -5096 315 271 62 54 chr12 26488052 26488292 -117794197 + MER112 DNA MER1_type 17 258 -2 1468 178 3 60 chr12 26488738 26489036 -117793453 - AluJo SINE Alu -12 300 20 1955 139 0 4 chr12 26489036 26489317 -117793172 - AluSc SINE Alu -29 280 1 509 266 28 0 chr12 26489575 26489684 -117792805 + L3 LINE CR1 1044 1155 -422 199 328 172 0 chr12 26490259 26490387 -117792102 - MIR SINE MIR -6 256 107 618 258 72 19 chr12 26490488 26490697 -117791792 + MIR SINE MIR 14 233 -29 325 256 122 0 chr12 26490996 26491078 -117791411 - MIR SINE MIR -63 145 54 2261 80 14 0 chr12 26491595 26491914 -117790575 - AluSp SINE Alu 0 323 1 2281 103 0 34 chr12 26492521 26492841 -117789648 - AluSg SINE Alu -1 309 1 347 292 64 17 chr12 26494566 26494700 -117787789 + MIR SINE MIR 38 175 -62 24 0 0 0 chr12 26495131 26495155 -117787334 + AT_rich Low_complexity Low_complexity 1 24 0 1621 224 131 17 chr12 26496110 26496530 -117785959 - MLT1F LTR MaLR -72 470 3 242 258 175 31 chr12 26496852 26496949 -117785540 - L2 LINE L2 0 3313 3203 502 272 83 12 chr12 26496964 26497133 -117785356 + MIR SINE MIR 11 191 -71 21 0 0 0 chr12 26498950 26498971 -117783518 + AT_rich Low_complexity Low_complexity 1 21 0 213 94 0 0 chr12 26501964 26501996 -117780493 + (TG)n Simple_repeat Simple_repeat 2 33 0 2184 98 10 0 chr12 26502857 26503153 -117779336 - AluSq SINE Alu -13 300 2 228 281 195 8 chr12 26503498 26503626 -117778863 - L2 LINE L2 -19 3294 3143 916 165 136 23 chr12 26503973 26504149 -117778340 + AluJb SINE Alu 1 196 -116 24 0 0 0 chr12 26504895 26504919 -117777570 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr12 26504976 26505025 -117777464 + AT_rich Low_complexity Low_complexity 1 49 0 2433 141 34 5 chr12 26505038 26505485 -117777004 - Tigger3b DNA MER2_type 0 1231 772 1186 139 27 5 chr12 26505485 26505672 -117776817 - AluJb SINE Alu -2 310 120 721 189 0 61 chr12 26505674 26505822 -117776667 - AluJo SINE Alu -153 159 21 26 30 0 0 chr12 26505823 26505856 -117776633 + AT_rich Low_complexity Low_complexity 1 33 0 4038 126 58 15 chr12 26505880 26506617 -117775872 - Tigger3b DNA MER2_type -462 769 1 2253 123 3 0 chr12 26506658 26506967 -117775522 + AluSq SINE Alu 1 310 -3 1786 104 4 8 chr12 26507001 26507241 -117775248 + AluSg SINE Alu 1 239 -71 1012 151 5 0 chr12 26507249 26507434 -117775055 - L1 LINE L1 -1970 4176 3991 506 188 51 0 chr12 26507509 26507626 -117774863 - L1 LINE L1 -1146 5000 4878 * 1594 151 0 0 chr12 26507625 26507910 -117774579 - L1 LINE L1 -2158 3988 3704 27 29 0 0 chr12 26508265 26508299 -117774190 + AT_rich Low_complexity Low_complexity 1 34 0 2070 151 0 0 chr12 26508402 26508701 -117773788 + AluJb SINE Alu 1 299 -13 1955 121 57 6 chr12 26508910 26509242 -117773247 - Tigger2 DNA MER2_type 0 2718 2370 693 203 0 0 chr12 26509389 26509512 -117772977 + FLAM_C SINE Alu 11 133 -10 216 0 0 0 chr12 26509672 26509696 -117772793 + (TG)n Simple_repeat Simple_repeat 2 25 0 244 239 80 106 chr12 26510775 26510963 -117771526 + MIR SINE MIR 32 214 -48 505 223 18 0 chr12 26511105 26511217 -117771272 + MER94 DNA DNA 21 134 0 2007 115 42 76 chr12 26511377 26511787 -117770702 - MSTB1 LTR MaLR -3 429 34 217 323 141 21 chr12 26512014 26512206 -117770283 - L2 LINE L2 -181 3091 2877 2212 91 7 0 chr12 26512502 26512789 -117769700 + AluY SINE Alu 4 292 -19 218 207 0 103 chr12 26513468 26513526 -117768963 - MIR SINE MIR -138 70 19 635 230 18 18 chr12 26513840 26514005 -117768484 + MER20B DNA MER1_type 2 166 -617 1385 239 239 4 chr12 26514023 26514559 -117767930 - L2 LINE L2 -1099 2215 1554 1716 156 37 71 chr12 26516027 26516405 -117766084 + MLT1A1 LTR MaLR 1 365 0 191 255 21 0 chr12 26516494 26516541 -117765948 + L2 LINE L2 3216 3263 -9 893 267 50 8 chr12 26516584 26516824 -117765665 + MIR SINE MIR 2 251 -11 1953 147 20 3 chr12 26517182 26517482 -117765007 - AluJo SINE Alu -7 305 1 21 0 0 0 chr12 26518138 26518159 -117764330 + AT_rich Low_complexity Low_complexity 1 21 0 279 354 76 0 chr12 26518744 26518888 -117763601 - MER117 DNA MER1_type -42 155 1 1991 138 7 10 chr12 26519430 26519728 -117762761 + AluJb SINE Alu 1 297 -15 219 173 19 0 chr12 26520703 26520755 -117761734 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 24 0 0 0 chr12 26521624 26521648 -117760841 + AT_rich Low_complexity Low_complexity 1 24 0 894 215 112 71 chr12 26521778 26522422 -117760067 - LTR41 LTR ERVL -12 761 19 30 59 0 0 chr12 26522843 26522894 -117759595 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr12 26523914 26523936 -117758553 + AT_rich Low_complexity Low_complexity 1 22 0 465 34 0 0 chr12 26524070 26524129 -117758360 + (TG)n Simple_repeat Simple_repeat 2 60 0 26 30 0 0 chr12 26524215 26524248 -117758241 + AT_rich Low_complexity Low_complexity 1 33 0 790 262 154 14 chr12 26524594 26524945 -117757544 + MLT1D LTR MaLR 106 505 0 22 56 0 0 chr12 26525153 26525189 -117757300 + AT_rich Low_complexity Low_complexity 1 36 0 477 319 69 5 chr12 26525277 26525481 -117757008 + MIR SINE MIR 20 236 -26 873 222 42 0 chr12 26525605 26525817 -117756672 + L1MB8 LINE L1 3 223 -6636 639 186 0 0 chr12 26525817 26525930 -117756559 + MSTC LTR MaLR 1 113 -315 4980 205 102 34 chr12 26525930 26527241 -117755248 + L1MB8 LINE L1 309 1943 -5195 2240 80 10 29 chr12 26527241 26527552 -117754937 - AluSp SINE Alu -8 305 1 4980 205 102 34 chr12 26527552 26528170 -117754319 + L1MB8 LINE L1 1943 2517 -4621 808 150 0 43 chr12 26528665 26528805 -117753684 - FLAM_C SINE Alu -9 134 1 3589 220 58 20 chr12 26528835 26529179 -117753310 + L1MB8 LINE L1 4307 4636 -2321 2278 82 0 10 chr12 26529179 26529473 -117753016 + AluY SINE Alu 1 291 -20 3589 220 58 20 chr12 26529473 26529780 -117752709 + L1MB8 LINE L1 4636 4930 -2027 2431 56 0 20 chr12 26529780 26530085 -117752404 + AluY SINE Alu 1 299 -12 3589 220 58 20 chr12 26530085 26530428 -117752061 + L1MB8 LINE L1 4930 5340 -1617 3335 205 101 18 chr12 26530423 26530941 -117751548 + L1MB8 LINE L1 5729 6203 -786 * 2182 109 0 0 chr12 26530941 26531224 -117751265 - AluSx SINE Alu -13 299 17 3335 205 101 18 chr12 26531224 26531868 -117750621 + L1MB8 LINE L1 6203 6983 -6 234 171 0 0 chr12 26532207 26532242 -117750247 - L2 LINE L2 -15 3298 3264 24 53 0 0 chr12 26534519 26534557 -117747932 + AT_rich Low_complexity Low_complexity 1 38 0 837 215 47 6 chr12 26535314 26535486 -117747003 - MER58A DNA MER1_type -27 197 19 239 224 0 0 chr12 26538199 26538248 -117744241 + Charlie8 DNA MER1_type 439 487 -1930 392 319 48 18 chr12 26538285 26538451 -117744038 + MIR SINE MIR 11 181 -81 1353 96 101 0 chr12 26538819 26539028 -117743461 + MER30 DNA MER1_type 1 230 0 219 152 24 42 chr12 26539875 26540040 -117742449 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 296 165 44 11 chr12 26540048 26540139 -117742350 + (TA)n Simple_repeat Simple_repeat 1 94 0 247 223 58 8 chr12 26540254 26540375 -117742114 + (TATAA)n Simple_repeat Simple_repeat 5 131 0 261 97 35 44 chr12 26540375 26540488 -117742001 + (TA)n Simple_repeat Simple_repeat 1 112 0 24 85 0 0 chr12 26540922 26540981 -117741508 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr12 26541067 26541088 -117741401 + AT_rich Low_complexity Low_complexity 1 21 0 2013 108 25 51 chr12 26541132 26541447 -117741042 + AluSx SINE Alu 1 307 -5 404 226 52 26 chr12 26541697 26541812 -117740677 + MER97c DNA MER1_type? 59 176 -914 432 0 0 0 chr12 26543115 26543163 -117739326 + (CA)n Simple_repeat Simple_repeat 2 49 0 2295 80 0 17 chr12 26545398 26545698 -117736791 - AluY SINE Alu -16 295 1 359 268 150 80 chr12 26546291 26546691 -117735798 + L1M2 LINE L1 684 1111 -5738 310 258 67 0 chr12 26546765 26546854 -117735635 - L1MC4 LINE L1 -1339 6703 6609 28 29 0 0 chr12 26547857 26547892 -117734597 + AT_rich Low_complexity Low_complexity 1 35 0 208 317 73 0 chr12 26548198 26548280 -117734209 - L2 LINE L2 -6 3266 3179 338 312 19 80 chr12 26548437 26548748 -117733741 - L2 LINE L2 -410 2904 2613 1434 202 143 12 chr12 26548768 26549189 -117733300 + L1ME3A LINE L1 5687 6162 -8 21 89 0 0 chr12 26550940 26550996 -117731493 + AT_rich Low_complexity Low_complexity 1 56 0 218 232 36 0 chr12 26551212 26551268 -117731221 - L2 LINE L2 -901 2413 2356 350 272 106 7 chr12 26551499 26551635 -117730854 + MIR SINE MIR 49 196 -66 762 144 8 16 chr12 26551705 26551830 -117730659 + FLAM_C SINE Alu 3 126 -7 1216 230 134 20 chr12 26552931 26553335 -117729154 + MER54B LTR ERVL 341 790 -3 2174 100 0 14 chr12 26553866 26554206 -117728283 - AluSq SINE Alu 0 336 1 2367 77 3 3 chr12 26554932 26555231 -117727258 - AluY SINE Alu -12 299 1 189 281 62 31 chr12 26555645 26555709 -117726780 - MIR SINE MIR -163 99 34 418 253 117 26 chr12 26556247 26556401 -117726088 + MIR SINE MIR 74 241 -21 496 178 9 19 chr12 26556551 26556658 -117725831 + MER82 DNA MER2_type 99 204 -449 2010 216 39 14 chr12 26556951 26557391 -117725098 + MER82 DNA MER2_type 203 653 0 1022 122 0 6 chr12 26557844 26558000 -117724489 - L1P LINE L1 -1882 4264 4110 1165 189 41 19 chr12 26558105 26558375 -117724114 + L1MA10 LINE L1 5926 6201 -133 453 239 26 8 chr12 26558668 26558785 -117723704 - MER103 DNA DNA -45 121 3 183 42 0 0 chr12 26559879 26559903 -117722586 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2107 113 10 0 chr12 26561051 26561351 -117721138 + AluSx SINE Alu 1 303 -9 262 292 0 0 chr12 26561550 26561615 -117720874 - L2 LINE L2 -2 3270 3206 234 0 0 0 chr12 26562248 26562274 -117720215 + (TG)n Simple_repeat Simple_repeat 1 26 0 7190 46 8 0 chr12 26562282 26563540 -117718949 - L1PA5 LINE L1 -3 6151 4886 743 131 29 52 chr12 26563641 26563806 -117718683 + THE1C LTR MaLR 201 350 -25 1568 115 3 90 chr12 26563830 26564160 -117718329 - MER4A LTR ERV1 -42 622 263 2304 96 0 3 chr12 26564186 26564488 -117718001 + AluSx SINE Alu 10 310 -2 342 261 0 43 chr12 26564648 26564836 -117717653 + T-rich Low_complexity Low_complexity 1 180 0 377 227 113 18 chr12 26565911 26566065 -117716424 + AluSq/x SINE Alu 2 105 -198 189 213 0 0 chr12 26567985 26568032 -117714457 + (CA)n Simple_repeat Simple_repeat 2 48 0 266 223 125 9 chr12 26568893 26569005 -117713484 - L1ME4a LINE L1 -12 6109 5985 23 68 0 0 chr12 26569121 26569165 -117713324 + AT_rich Low_complexity Low_complexity 1 44 0 306 211 0 0 chr12 26569232 26569284 -117713205 - MLT1I LTR MaLR 0 409 358 2403 66 0 0 chr12 26569379 26569667 -117712822 - AluY SINE Alu -23 288 1 285 310 26 9 chr12 26570462 26570578 -117711911 + L2 LINE L2 3192 3309 -4 23 33 0 0 chr12 26570914 26570944 -117711545 + AT_rich Low_complexity Low_complexity 1 30 0 180 111 0 0 chr12 26571022 26571049 -117711440 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 197 286 78 26 chr12 26571563 26571640 -117710849 - MIR3 SINE MIR -19 189 109 456 286 103 49 chr12 26571872 26572096 -117710393 - MIR SINE MIR -5 257 22 23 0 0 0 chr12 26572163 26572186 -117710303 + AT_rich Low_complexity Low_complexity 1 23 0 180 184 0 0 chr12 26572274 26572312 -117710177 - L2 LINE L2 -25 3247 3210 1860 163 7 13 chr12 26572862 26573169 -117709320 - AluJb SINE Alu -7 305 1 197 317 0 49 chr12 26575092 26575174 -117707315 - MIR3 SINE MIR -24 184 107 567 153 119 119 chr12 26575533 26575710 -117706779 - MER3 DNA MER1_type -79 130 1 183 186 136 17 chr12 26575726 26575785 -117706704 + MER5A DNA MER1_type 10 75 -114 22 0 0 0 chr12 26577008 26577030 -117705459 + AT_rich Low_complexity Low_complexity 1 22 0 1721 170 13 26 chr12 26577234 26577540 -117704949 - AluJb SINE Alu -10 302 1 22 35 0 0 chr12 26577621 26577650 -117704839 + AT_rich Low_complexity Low_complexity 1 29 0 2029 109 0 7 chr12 26582924 26583209 -117699280 + AluSq SINE Alu 1 283 -30 554 147 0 10 chr12 26583218 26583320 -117699169 + (CA)n Simple_repeat Simple_repeat 2 102 0 212 304 131 84 chr12 26583733 26583822 -117698667 - L2 LINE L2 -1 3271 3188 1980 121 0 7 chr12 26583822 26584112 -117698377 - AluSg SINE Alu -22 288 1 212 304 131 84 chr12 26584112 26584259 -117698230 - L2 LINE L2 -84 3188 3024 581 297 82 30 chr12 26584260 26584563 -117697926 - L2 LINE L2 -417 2897 2579 181 301 0 86 chr12 26584581 26584674 -117697815 - L2 LINE L2 -12 3260 3176 467 294 242 4 chr12 26585394 26585646 -117696843 - L3 LINE CR1 -78 1499 1188 7338 37 6 1 chr12 26585730 26587154 -117695335 - L1PA6 LINE L1 0 6154 4732 247 320 147 0 chr12 26587223 26587373 -117695116 - L3 LINE CR1 -602 975 804 700 301 124 13 chr12 26587567 26587873 -117694616 - L2 LINE L2 -17 3296 2957 4580 153 50 41 chr12 26588543 26588772 -117693717 + L1MA9 LINE L1 5096 5321 -991 2118 116 0 23 chr12 26588772 26589074 -117693415 + AluY SINE Alu 1 295 -16 4580 153 50 41 chr12 26589074 26589912 -117692577 + L1MA9 LINE L1 5321 6171 -141 342 0 0 0 chr12 26589912 26589950 -117692539 + (CA)n Simple_repeat Simple_repeat 1 38 0 4580 153 50 41 chr12 26589950 26590063 -117692426 + L1MA9 LINE L1 6171 6282 -30 1616 174 64 25 chr12 26590427 26590788 -117691701 - THE1C LTR MaLR 0 375 1 9707 123 19 35 chr12 26590788 26592392 -117690097 - THE1C-int LTR MaLR 0 1580 4 6981 48 6 25 chr12 26592434 26593722 -117688767 + L1PA5 LINE L1 4912 6182 0 456 130 11 33 chr12 26593798 26593890 -117688599 + MER4A LTR ERV1 1 90 -574 2052 173 0 3 chr12 26593891 26594197 -117688292 - AluSx SINE Alu -3 309 5 1619 108 168 82 chr12 26594213 26594565 -117687924 + MER4A LTR ERV1 257 638 -26 1500 143 66 66 chr12 26594573 26594923 -117687566 - THE1C LTR MaLR -25 350 1 2429 84 0 0 chr12 26594935 26595234 -117687255 + AluSg SINE Alu 1 299 -11 1834 156 0 7 chr12 26595234 26595516 -117686973 - AluJo SINE Alu -31 281 1 234 185 46 0 chr12 26595544 26595609 -117686880 + (TA)n Simple_repeat Simple_repeat 1 68 0 408 165 13 3 chr12 26595610 26595695 -117686794 + MLT2B2 LTR ERVL 1 84 -313 2192 118 0 13 chr12 26595696 26596002 -117686487 - AluSg SINE Alu -8 302 1 279 392 0 0 chr12 26596549 26596646 -117685843 + MIR SINE MIR 53 149 -59 197 405 42 0 chr12 26596767 26596935 -117685554 - L2 LINE L2 -946 2368 2194 25 65 0 0 chr12 26596970 26597016 -117685473 + AT_rich Low_complexity Low_complexity 1 46 0 1226 114 0 0 chr12 26597026 26597184 -117685305 - AluSp SINE Alu -26 287 130 2268 113 0 0 chr12 26597188 26597490 -117684999 - AluSc SINE Alu -7 302 1 325 324 214 0 chr12 26597563 26597708 -117684781 + MER5A DNA MER1_type 14 189 0 1589 156 132 12 chr12 26597852 26598178 -117684311 - MLT1A1 LTR MaLR 0 365 1 225 255 0 0 chr12 26598715 26598762 -117683727 + (TG)n Simple_repeat Simple_repeat 1 47 0 37 23 0 0 chr12 26598943 26598987 -117683502 + AT_rich Low_complexity Low_complexity 1 44 0 469 315 50 22 chr12 26599174 26599355 -117683134 + MIR3 SINE MIR 21 206 -2 1986 103 75 0 chr12 26599757 26600038 -117682451 + AluSc SINE Alu 1 302 -7 477 259 0 0 chr12 26600169 26600281 -117682208 + L2 LINE L2 3197 3308 -5 289 280 13 0 chr12 26602119 26602194 -117680295 + MIR3 SINE MIR 132 207 -1 225 0 0 0 chr12 26602297 26602322 -117680167 + (T)n Simple_repeat Simple_repeat 1 25 0 301 260 110 50 chr12 26602624 26602724 -117679765 - L2 LINE L2 0 3272 3167 2066 124 3 13 chr12 26602768 26603083 -117679406 + AluSx SINE Alu 1 312 0 569 235 46 0 chr12 26603618 26603791 -117678698 + L1MCa LINE L1 1731 2025 -4532 1488 208 139 41 chr12 26603949 26603986 -117678503 - MLT2B1 LTR ERVL -2 518 486 526 71 24 0 chr12 26603986 26604070 -117678419 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 1488 208 139 41 chr12 26604070 26604499 -117677990 - MLT2B1 LTR ERVL -34 486 6 414 0 0 0 chr12 26604722 26604768 -117677721 + (TTA)n Simple_repeat Simple_repeat 2 47 0 3929 184 82 52 chr12 26605437 26606446 -117676043 + MER45B DNA AcHobo 2 1040 0 246 300 12 0 chr12 26607584 26607664 -117674825 + MER20B DNA MER1_type 3 83 -700 5161 129 50 18 chr12 26607705 26608664 -117673825 + L1MA7 LINE L1 5296 6285 -6 248 289 0 40 chr12 26608694 26608770 -117673719 + MER20B DNA MER1_type 115 187 -596 843 198 45 0 chr12 26608823 26608980 -117673509 - AluJb SINE Alu -4 308 145 602 298 18 0 chr12 26608992 26609210 -117673279 + MER20B DNA MER1_type 295 516 -267 592 170 104 130 chr12 26609303 26609370 -117673119 + MER20B DNA MER1_type 518 585 -198 208 70 47 0 chr12 26609370 26609413 -117673076 + (TA)n Simple_repeat Simple_repeat 2 46 0 592 170 104 130 chr12 26609413 26609615 -117672874 + MER20B DNA MER1_type 585 780 -3 312 342 187 0 chr12 26610391 26610546 -117671943 + MIR SINE MIR 78 261 -1 342 289 84 30 chr12 26611240 26611406 -117671083 - MIR SINE MIR -65 197 23 446 243 64 17 chr12 26611490 26611631 -117670858 - MIR SINE MIR -26 182 33 1533 199 30 33 chr12 26612012 26612378 -117670111 + MLT1A1 LTR MaLR 1 365 0 211 269 129 54 chr12 26613080 26613173 -117669316 - L2 LINE L2 -4 3268 3169 712 267 48 0 chr12 26614082 26614288 -117668201 + L2 LINE L2 2832 3047 -266 524 188 4 195 chr12 26614372 26614628 -117667861 - MLT1D LTR MaLR -45 460 254 2405 87 0 0 chr12 26614926 26615224 -117667265 - AluSx SINE Alu -14 298 1 796 156 6 78 chr12 26615229 26615409 -117667080 - L1MD3 LINE L1 -419 7576 7410 295 185 0 0 chr12 26615411 26615465 -117667024 - MLT1D LTR MaLR -442 125 72 825 175 18 102 chr12 26615483 26615815 -117666674 - L1MC4 LINE L1 -7 8035 7732 479 308 37 71 chr12 26615818 26616172 -117666317 + L1MEc LINE L1 37 378 -6018 319 283 0 0 chr12 26616183 26616275 -117666214 - L1MC4a LINE L1 -1214 6594 6503 423 257 77 6 chr12 26616526 26616709 -117665780 - HAL1b LINE L1 -585 763 568 555 289 6 31 chr12 26616711 26616870 -117665619 + MER5B DNA MER1_type 4 158 -20 605 180 18 9 chr12 26617135 26617246 -117665243 - MER5A DNA MER1_type -77 112 1 339 287 0 23 chr12 26618799 26618886 -117663603 - L2 LINE L2 -4 3309 3225 804 274 29 29 chr12 26619554 26619831 -117662658 + MER102a DNA MER1_type 32 308 -22 311 232 0 0 chr12 26620355 26620424 -117662065 - L2 LINE L2 -217 3055 2987 2126 100 3 32 chr12 26620663 26620974 -117661515 + AluSg SINE Alu 1 302 -8 222 296 121 8 chr12 26620984 26621116 -117661373 - L2 LINE L2 -625 2689 2543 * 393 267 112 17 chr12 26621115 26621231 -117661258 - L2 LINE L2 -9 3263 3137 183 100 100 0 chr12 26621721 26621751 -117660738 + L2 LINE L2 3219 3251 -21 725 275 74 85 chr12 26621850 26622368 -117660121 - L2 LINE L2 -1 3312 2841 335 225 153 27 chr12 26622518 26622629 -117659860 + L2 LINE L2 3186 3310 -3 24 100 0 0 chr12 26623823 26623903 -117658586 + GC_rich Low_complexity Low_complexity 1 80 0 287 158 287 40 chr12 26625251 26625352 -117657137 + MIR SINE MIR 5 130 -132 465 234 29 44 chr12 26625740 26625945 -117656544 - L1M4 LINE L1 -1754 4392 4191 28 79 0 0 chr12 26628204 26628267 -117654222 + AT_rich Low_complexity Low_complexity 1 63 0 198 269 0 75 chr12 26628512 26628579 -117653910 + L3 LINE CR1 1515 1576 -1 344 261 52 52 chr12 26628901 26629054 -117653435 + MIR3 SINE MIR 31 183 -25 25 0 0 0 chr12 26629901 26629926 -117652563 + AT_rich Low_complexity Low_complexity 1 25 0 200 279 0 0 chr12 26630636 26630704 -117651785 + (TA)n Simple_repeat Simple_repeat 2 69 0 282 73 0 0 chr12 26631754 26631795 -117650694 + (CGG)n Simple_repeat Simple_repeat 3 43 0 22 0 0 0 chr12 26631948 26631970 -117650519 + GC_rich Low_complexity Low_complexity 1 22 0 259 71 18 54 chr12 26632077 26632133 -117650356 + (CCG)n Simple_repeat Simple_repeat 3 56 0 201 74 0 0 chr12 26634430 26634457 -117648032 + (CA)n Simple_repeat Simple_repeat 1 27 0 232 273 23 0 chr12 26634583 26634671 -117647818 + (CGGGG)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr12 26635989 26636011 -117646478 + GC_rich Low_complexity Low_complexity 1 22 0 208 358 13 7 chr12 26636995 26637146 -117645343 + T-rich Low_complexity Low_complexity 1 152 0 700 259 85 25 chr12 26637365 26637601 -117644888 - MIR SINE MIR 0 262 13 402 302 118 35 chr12 26637945 26638200 -117644289 + L3b LINE CR1 1281 1556 -27 389 255 68 57 chr12 26640126 26640318 -117642171 - MLT1J LTR MaLR -42 469 276 390 259 89 15 chr12 26641252 26641387 -117641102 - MIR SINE MIR -88 174 30 274 290 168 0 chr12 26641725 26641832 -117640657 - L2 LINE L2 -2 3311 3187 260 316 86 0 chr12 26642753 26642927 -117639562 + L2 LINE L2 2458 2646 -668 361 250 0 0 chr12 26642928 26643004 -117639485 - LTR33A LTR ERVL -2 521 446 252 306 9 28 chr12 26643214 26643322 -117639167 - MLT2E LTR ERVL -491 137 32 784 325 46 68 chr12 26643391 26644020 -117638469 + L2 LINE L2 2631 3247 -25 1992 142 51 12 chr12 26645451 26645782 -117636707 - MER2 DNA MER2_type 0 344 1 363 283 150 18 chr12 26645804 26646030 -117636459 + MIR SINE MIR 7 262 0 794 241 51 8 chr12 26646512 26646749 -117635740 - MIR SINE MIR 0 262 16 235 294 144 60 chr12 26646853 26647007 -117635482 + MIR SINE MIR 18 182 -62 259 206 0 0 chr12 26647063 26647126 -117635363 + L1MC4 LINE L1 6640 6702 -1340 2168 113 3 7 chr12 26647126 26647435 -117635054 - AluSx SINE Alu -4 308 1 1410 187 154 26 chr12 26647453 26647758 -117634731 + MER2 DNA MER2_type 1 344 0 1017 164 25 35 chr12 26647925 26648126 -117634363 + MER3 DNA MER1_type 5 203 -6 21 0 0 0 chr12 26648171 26648192 -117634297 + AT_rich Low_complexity Low_complexity 1 21 0 3121 204 61 40 chr12 26648481 26649305 -117633184 + MER63C DNA MER1_type 1 841 -89 996 269 29 95 chr12 26649399 26649946 -117632543 + L2 LINE L2 2107 2617 -697 2273 129 121 5 chr12 26649958 26650337 -117632152 + MSTA LTR MaLR 6 428 0 348 299 134 12 chr12 26650338 26650481 -117632008 + L2 LINE L2 2626 2793 -521 2367 191 30 26 chr12 26650481 26650984 -117631505 + MLT1D LTR MaLR 1 505 0 348 299 134 12 chr12 26650984 26651004 -117631485 + L2 LINE L2 2793 2809 -505 541 321 147 22 chr12 26651676 26652315 -117630174 - L2 LINE L2 -571 2743 2025 821 289 43 4 chr12 26652768 26653000 -117629489 - MIR SINE MIR -1 261 21 3347 100 40 2 chr12 26653222 26653673 -117628816 + MER1A DNA MER1_type 62 529 0 283 263 192 0 chr12 26654135 26654234 -117628255 + L2 LINE L2 3196 3313 0 1666 141 12 0 chr12 26656053 26656308 -117626181 + AluSx SINE Alu 44 301 -11 2213 112 7 0 chr12 26656737 26657040 -117625449 - AluSx SINE Alu -7 305 1 21 82 0 0 chr12 26657432 26657481 -117625008 + AT_rich Low_complexity Low_complexity 1 49 0 344 314 113 10 chr12 26658935 26659139 -117623350 + MIR SINE MIR 37 261 -1 28 0 0 0 chr12 26659321 26659349 -117623140 + AT_rich Low_complexity Low_complexity 1 28 0 519 198 78 17 chr12 26660994 26661110 -117621379 - L2 LINE L2 0 3313 3191 2601 191 21 19 chr12 26661443 26661967 -117620522 + MER63 DNA MER1_type 515 1039 -22 1217 302 65 9 chr12 26661967 26662584 -117619905 + L2 LINE L2 2438 3089 -224 628 223 40 14 chr12 26662621 26662769 -117619720 + MIR SINE MIR 90 241 -21 218 185 0 37 chr12 26662789 26662843 -117619646 + (TTA)n Simple_repeat Simple_repeat 2 53 0 700 253 33 0 chr12 26662849 26663031 -117619458 + L2 LINE L2 3123 3310 -3 276 294 65 0 chr12 26663738 26663830 -117618659 + L2 LINE L2 3142 3239 -33 324 213 128 121 chr12 26663991 26664132 -117618357 + MIR SINE MIR 20 161 -101 192 361 33 16 chr12 26665202 26665324 -117617165 - MIR SINE MIR -6 256 133 332 306 122 7 chr12 26665621 26665768 -117616721 - MIR SINE MIR -59 203 40 228 263 164 40 chr12 26666284 26666436 -117616053 - MIR SINE MIR -86 176 6 361 154 45 18 chr12 26667686 26667796 -117614693 + CT-rich Low_complexity Low_complexity 4 116 0 215 323 23 53 chr12 26669109 26669242 -117613247 + L3 LINE CR1 1247 1375 -202 227 294 44 0 chr12 26669304 26669372 -117613117 + L2 LINE L2 3202 3272 0 1039 249 88 53 chr12 26670150 26670295 -117612194 + L2 LINE L2 2553 2692 -621 2310 118 0 0 chr12 26670295 26670599 -117611890 + AluSx SINE Alu 1 304 -8 1039 249 88 53 chr12 26670599 26671132 -117611357 + L2 LINE L2 2692 3253 -60 2350 125 6 15 chr12 26671132 26671468 -117611021 - MER1B DNA MER1_type 0 337 5 1039 249 88 53 chr12 26671468 26671525 -117610964 + L2 LINE L2 3253 3307 -6 196 309 122 32 chr12 26671912 26672035 -117610454 - L3b LINE CR1 -229 1354 1221 375 23 0 0 chr12 26672502 26672546 -117609943 + (TG)n Simple_repeat Simple_repeat 2 45 0 1475 171 106 86 chr12 26672868 26673254 -117609235 - MSTD LTR MaLR 0 396 3 200 324 68 0 chr12 26673359 26673433 -117609056 - L2 LINE L2 -47 3225 3147 355 259 49 56 chr12 26673656 26673818 -117608671 + MER5A DNA MER1_type 1 161 -28 820 194 0 0 chr12 26673887 26674021 -117608468 + FRAM SINE Alu 25 158 -18 201 253 200 20 chr12 26675231 26675381 -117607108 + L3b LINE CR1 1213 1389 -194 2205 47 4 0 chr12 26675500 26675753 -117606736 + L1PA7 LINE L1 5901 6154 0 284 311 38 56 chr12 26675932 26675980 -117606509 + L1ME4a LINE L1 5581 5628 -493 1482 210 69 3 chr12 26675980 26676299 -117606190 + MER58B DNA MER1_type 2 341 0 284 311 38 56 chr12 26676299 26676591 -117605898 + L1ME4a LINE L1 5628 5915 -206 2013 150 3 0 chr12 26677400 26677700 -117604789 + AluJb SINE Alu 1 301 -11 21 0 0 0 chr12 26678456 26678477 -117604012 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 26679047 26679071 -117603418 + AT_rich Low_complexity Low_complexity 1 24 0 644 283 24 39 chr12 26680333 26680568 -117601921 - MIR SINE MIR -19 243 16 1941 200 97 16 chr12 26680835 26681319 -117601170 + Charlie1b DNA MER1_type 1 523 0 563 178 0 19 chr12 26681539 26681646 -117600843 - FLAM_A SINE Alu -4 138 34 366 285 59 55 chr12 26681722 26681975 -117600514 - HAL1 LINE L1 -9 2498 2245 530 86 0 0 chr12 26682226 26682296 -117600193 - AluSc SINE Alu -7 302 233 392 377 40 5 chr12 26682386 26682585 -117599904 - HAL1 LINE L1 -1477 1030 825 367 359 72 49 chr12 26682662 26683149 -117599340 - HAL1 LINE L1 -2009 498 1 1015 182 50 50 chr12 26683805 26683944 -117598545 - L1ME1 LINE L1 -9 6169 6032 470 17 0 17 chr12 26683944 26684004 -117598485 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 2154 109 7 0 chr12 26684004 26684289 -117598200 - AluSx SINE Alu -25 287 1 1015 182 50 50 chr12 26684289 26684974 -117597515 - L1ME1 LINE L1 -145 6033 5187 2123 145 0 0 chr12 26685308 26685605 -117596884 - AluSx SINE Alu -15 297 1 565 347 28 16 chr12 26686244 26686495 -117595994 + L2 LINE L2 2553 2806 -508 745 244 74 11 chr12 26687636 26687812 -117594677 + MIR SINE MIR 2 188 -74 219 69 0 0 chr12 26687812 26687841 -117594648 + (TG)n Simple_repeat Simple_repeat 2 30 0 494 301 98 61 chr12 26688360 26688768 -117593721 - L2 LINE L2 -2 3270 2848 216 0 0 0 chr12 26689388 26689412 -117593077 + (T)n Simple_repeat Simple_repeat 1 24 0 382 307 26 48 chr12 26691308 26691536 -117590953 - MARNA DNA Mariner -62 524 302 190 361 19 9 chr12 26691556 26691664 -117590825 + MIR3 SINE MIR 15 123 -85 677 54 21 0 chr12 26692031 26692124 -117590365 + (TTCCC)n Simple_repeat Simple_repeat 5 99 0 180 361 0 16 chr12 26692125 26692186 -117590303 - MER5B DNA MER1_type 0 178 119 2096 120 7 10 chr12 26692235 26692534 -117589955 - AluSx SINE Alu -14 298 1 744 195 0 0 chr12 26692757 26692880 -117589609 - FLAM_C SINE Alu -18 125 3 185 269 75 97 chr12 26693739 26693832 -117588657 + L2 LINE L2 3181 3271 -1 400 185 163 0 chr12 26694678 26694770 -117587719 - L2 LINE L2 -5 3267 3161 470 195 127 8 chr12 26695354 26695472 -117587017 + L2 LINE L2 3136 3267 -5 252 213 225 12 chr12 26696243 26696323 -117586166 - L2 LINE L2 -7 3265 3169 846 275 9 0 chr12 26697503 26697714 -117584775 - MIR SINE MIR -36 226 14 327 311 28 19 chr12 26698168 26698274 -117584215 - L2 LINE L2 -13 3259 3153 207 0 0 0 chr12 26698484 26698507 -117583982 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 422 314 63 63 chr12 26698919 26699282 -117583207 + L2 LINE L2 1565 1927 -1387 397 313 157 40 chr12 26699315 26699572 -117582917 - L2 LINE L2 -953 2361 2063 941 255 114 52 chr12 26699572 26700106 -117582383 + MLT1F1 LTR MaLR 1 567 0 397 313 157 40 chr12 26700106 26700148 -117582341 - L2 LINE L2 -1251 2063 2027 1445 190 61 28 chr12 26700234 26700628 -117581861 - L1ME2 LINE L1 -1 6163 5757 642 226 16 0 chr12 26700808 26700932 -117581557 + FLAM_A SINE Alu 1 126 -7 423 38 0 0 chr12 26701146 26701199 -117581290 + (CA)n Simple_repeat Simple_repeat 2 54 0 258 331 121 13 chr12 26702796 26702953 -117579536 + MIR SINE MIR 85 258 -4 2132 80 0 0 chr12 26703877 26704140 -117578349 - AluSg SINE Alu -35 275 13 1587 185 3 20 chr12 26704171 26704463 -117578026 + AluJo SINE Alu 1 287 -25 300 259 80 68 chr12 26705078 26705240 -117577249 + L1M2 LINE L1 1180 1343 -5506 298 301 154 0 chr12 26706145 26706288 -117576201 - MIR SINE MIR -12 250 86 387 295 58 12 chr12 26706426 26706605 -117575884 - MIR SINE MIR -49 213 31 993 170 0 0 chr12 26707644 26707797 -117574692 - AluSg/x SINE Alu -24 288 136 693 264 0 0 chr12 26707830 26707974 -117574515 + MIR SINE MIR 80 223 -39 392 0 21 0 chr12 26710480 26710528 -117571961 + (TA)n Simple_repeat Simple_repeat 2 50 0 1950 163 0 3 chr12 26710563 26710864 -117571625 + AluSx SINE Alu 1 300 -12 2048 157 21 0 chr12 26711417 26711754 -117570735 + MER2 DNA MER2_type 1 344 0 1741 130 80 44 chr12 26712313 26712675 -117569814 - THE1C LTR MaLR 0 375 1 219 180 60 20 chr12 26712793 26712843 -117569646 - L3 LINE CR1 -10 1567 1516 1496 210 33 46 chr12 26713157 26713552 -117568937 - MLT1B LTR MaLR 0 390 1 301 260 58 143 chr12 26716872 26717180 -117565309 - L1ME3A LINE L1 -112 6041 5760 1921 136 17 31 chr12 26717182 26717476 -117565013 + AluJb SINE Alu 1 290 -22 329 298 61 53 chr12 26717496 26717771 -117564718 - L1ME3A LINE L1 -415 5689 5491 372 268 150 0 chr12 26717779 26717932 -117564557 - L1ME3A LINE L1 -707 5438 5263 311 320 67 43 chr12 26717973 26718601 -117563888 - L1ME3A LINE L1 -914 5215 4573 514 282 61 71 chr12 26718861 26719264 -117563225 - L1ME3A LINE L1 -4971 1148 751 396 0 0 0 chr12 26719264 26719308 -117563181 + (TG)n Simple_repeat Simple_repeat 2 45 0 514 282 61 71 chr12 26719308 26719497 -117562992 - L1ME3A LINE L1 -5368 751 562 890 203 66 85 chr12 26719514 26719937 -117562552 - L1MC5 LINE L1 -44 7917 7503 249 128 0 0 chr12 26719967 26720014 -117562475 + (TC)n Simple_repeat Simple_repeat 2 48 0 233 225 56 28 chr12 26720059 26720130 -117562359 - L1ME3A LINE L1 -5548 571 499 260 291 0 12 chr12 26720216 26720302 -117562187 - L1ME3A LINE L1 -6029 90 6 279 274 108 0 chr12 26720341 26720443 -117562046 + MIR SINE MIR 95 207 -55 257 210 136 0 chr12 26722846 26722927 -117559562 - MIR SINE MIR -120 142 51 646 233 67 22 chr12 26723279 26723459 -117559030 + L2 LINE L2 3120 3307 -6 407 298 106 21 chr12 26723934 26724075 -117558414 - MIR SINE MIR -109 153 1 24 67 0 0 chr12 26724247 26724292 -117558197 + AT_rich Low_complexity Low_complexity 1 45 0 209 319 101 0 chr12 26724555 26724624 -117557865 + L2 LINE L2 3149 3224 -48 794 216 93 10 chr12 26724927 26725121 -117557368 - MER63A DNA MER1_type 0 210 1 247 302 35 0 chr12 26725485 26725571 -117556918 + MIR SINE MIR 172 260 -2 429 179 0 13 chr12 26725715 26725793 -117556696 + MER5A DNA MER1_type 2 78 -111 12351 22 0 0 chr12 26725793 26727309 -117555180 - L1P LINE L1 -743 5403 3888 4253 14 4 0 chr12 26727303 26727808 -117554681 + L1PA2 LINE L1 5508 6014 -141 * 2133 136 15 0 chr12 26727939 26728271 -117554218 + MER4B-int LTR ERV1 6422 6758 0 3494 130 6 38 chr12 26728271 26728901 -117553588 + MER4B LTR ERV1 1 610 0 578 246 0 3 chr12 26728903 26729039 -117553450 + MLT1A1 LTR MaLR 243 365 0 395 290 57 16 chr12 26729113 26729237 -117553252 - L2 LINE L2 -2 3270 3142 1335 19 0 0 chr12 26730246 26730402 -117552087 + L1PA2 LINE L1 6000 6155 0 430 269 83 0 chr12 26730402 26730510 -117551979 + MER5A DNA MER1_type 62 178 -11 180 0 0 0 chr12 26732148 26732168 -117550321 + (A)n Simple_repeat Simple_repeat 1 20 0 319 322 196 19 chr12 26732444 26732960 -117549529 + L2 LINE L2 2142 2748 -566 269 313 112 26 chr12 26733054 26733192 -117549297 + L2 LINE L2 2898 3048 -224 2314 92 3 0 chr12 26735114 26735407 -117547082 - AluSq SINE Alu -16 297 4 324 226 11 158 chr12 26735550 26735727 -117546762 + MIR SINE MIR 111 261 -1 241 408 58 25 chr12 26735882 26736002 -117546487 + L2 LINE L2 3144 3267 -5 189 0 0 0 chr12 26737646 26737667 -117544822 + (A)n Simple_repeat Simple_repeat 1 21 0 665 263 11 34 chr12 26739570 26739745 -117542744 - MIR SINE MIR -29 233 63 1834 117 91 11 chr12 26740019 26740293 -117542196 + AluSx SINE Alu 6 301 -11 189 0 0 0 chr12 26740554 26740575 -117541914 + (CA)n Simple_repeat Simple_repeat 2 22 0 841 175 0 0 chr12 26740764 26740890 -117541599 + FLAM_C SINE Alu 1 126 -7 189 0 0 0 chr12 26744835 26744856 -117537633 + (A)n Simple_repeat Simple_repeat 1 21 0 246 210 0 16 chr12 26745227 26745289 -117537200 - L1MC4 LINE L1 -1334 6708 6648 225 154 0 0 chr12 26747163 26747202 -117535287 + T-rich Low_complexity Low_complexity 2 40 0 6263 52 25 0 chr12 26747202 26747976 -117534513 - L1PA7 LINE L1 0 6154 5362 1663 72 18 0 chr12 26747972 26748193 -117534296 + L1PA7 LINE L1 5129 5353 -793 * 479 230 144 16 chr12 26748231 26748418 -117534071 + MIR SINE MIR 46 256 -6 22 35 0 0 chr12 26749181 26749210 -117533279 + AT_rich Low_complexity Low_complexity 1 29 0 192 40 0 0 chr12 26751337 26751362 -117531127 + (TC)n Simple_repeat Simple_repeat 2 26 0 358 282 185 56 chr12 26753895 26754094 -117528395 + MIR SINE MIR 6 236 -26 234 91 0 0 chr12 26754094 26754127 -117528362 + (ATGGTG)n Simple_repeat Simple_repeat 6 38 0 358 282 185 56 chr12 26754127 26754143 -117528346 + MIR SINE MIR 236 249 -13 23 0 0 0 chr12 26755798 26755821 -117526668 + AT_rich Low_complexity Low_complexity 1 23 0 333 289 97 9 chr12 26755978 26756092 -117526397 - MIR3 SINE MIR -2 206 83 806 265 11 52 chr12 26756610 26756882 -117525607 + MIR SINE MIR 1 261 -1 624 287 152 30 chr12 26758974 26759483 -117523006 - L2 LINE L2 -31 3282 2703 405 123 0 0 chr12 26760147 26760212 -117522277 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 1427 230 89 67 chr12 26760879 26760936 -117521553 + MLT1D LTR MaLR 3 57 -448 3678 142 6 9 chr12 26760936 26761465 -117521024 - MER1A DNA MER1_type 0 527 1 1427 230 89 67 chr12 26761465 26761899 -117520590 + MLT1D LTR MaLR 57 505 0 1917 163 3 3 chr12 26762176 26762482 -117520007 - AluJo SINE Alu -2 310 5 291 211 97 79 chr12 26762623 26762737 -117519752 - HAL1 LINE L1 -148 2359 2244 557 279 12 17 chr12 26762739 26762911 -117519578 - MER5B DNA MER1_type -4 174 4 2384 88 0 7 chr12 26763061 26763358 -117519131 + AluSc SINE Alu 1 295 -14 1665 192 128 15 chr12 26763418 26763925 -117518564 + MLT1E1 LTR MaLR 1 650 -4 248 269 0 76 chr12 26763939 26764058 -117518431 - HAL1b LINE L1 -474 874 765 2189 104 0 7 chr12 26764058 26764355 -117518134 + AluSx SINE Alu 1 295 -17 744 236 35 31 chr12 26764378 26764607 -117517882 + MIR SINE MIR 6 235 -27 554 308 56 32 chr12 26765201 26765451 -117517038 + MIR SINE MIR 6 261 -1 213 244 0 0 chr12 26766117 26766158 -117516331 - L2 LINE L2 -16 3256 3216 830 159 19 13 chr12 26766213 26766370 -117516119 - MER34C LTR ERV1 -2 583 426 588 165 132 8 chr12 26766396 26766517 -117515972 - MER34C LTR ERV1 -449 136 1 2431 214 84 5 chr12 26766620 26767251 -117515238 + L1M4 LINE L1 2415 3095 -3051 248 197 0 0 chr12 26767270 26767336 -117515153 + L1M4 LINE L1 3217 3282 -2864 26789 137 12 16 chr12 26767337 26768128 -117514361 + L1PA8A LINE L1 5 798 -5648 1993 158 176 29 chr12 26768128 26768570 -117513919 + LTR22 LTR ERVK 1 507 -2 26789 137 12 16 chr12 26768570 26769002 -117513487 + L1PA8A LINE L1 798 1230 -5216 216 97 0 0 chr12 26769002 26769033 -117513456 + (CAA)n Simple_repeat Simple_repeat 3 33 0 26789 137 12 16 chr12 26769033 26771277 -117511212 + L1PA8A LINE L1 1230 3481 -2965 2200 105 3 3 chr12 26771277 26771573 -117510916 - AluY SINE Alu -15 296 1 26789 137 12 16 chr12 26771573 26774508 -117507981 + L1PA8A LINE L1 3481 6445 -1 2119 248 40 26 chr12 26774532 26775185 -117507304 + L1M4 LINE L1 3322 3983 -2163 * 6571 79 19 2 chr12 26775171 26776062 -117506427 + L1PA10 LINE L1 5263 6168 0 268 246 8 51 chr12 26776093 26776211 -117506278 + L1MB8 LINE L1 6066 6178 0 3501 242 108 87 chr12 26776842 26778811 -117503678 - L2 LINE L2 0 3313 1299 2196 98 0 32 chr12 26779482 26779843 -117502646 - AluSx SINE Alu 0 312 1 326 298 87 43 chr12 26779913 26780121 -117502368 + MIR SINE MIR 25 241 -21 195 42 0 0 chr12 26780257 26780281 -117502208 + (TA)n Simple_repeat Simple_repeat 1 24 0 2881 218 58 33 chr12 26780292 26781027 -117501462 - MER21B LTR ERV1 -7 856 103 276 53 0 0 chr12 26782272 26782310 -117500179 + (CA)n Simple_repeat Simple_repeat 2 39 0 1318 222 18 13 chr12 26782411 26782719 -117499770 + MER33 DNA MER1_type 1 302 -22 443 290 73 12 chr12 26783021 26783204 -117499285 + MIR3 SINE MIR 5 200 -8 274 310 11 0 chr12 26783443 26783530 -117498959 + GA-rich Low_complexity Low_complexity 3 90 0 1734 160 34 115 chr12 26785180 26785598 -117496891 - MLT1B LTR MaLR -3 387 4 2219 103 7 7 chr12 26787161 26787463 -117495026 + AluSg SINE Alu 1 302 -8 614 248 52 19 chr12 26787969 26788156 -117494333 + MIR SINE MIR 25 215 -47 296 48 24 0 chr12 26788869 26788911 -117493578 + (CAT)n Simple_repeat Simple_repeat 1 43 0 349 277 45 74 chr12 26788936 26789037 -117493452 - MIR SINE MIR -20 242 148 1692 141 31 34 chr12 26789037 26789351 -117493138 - AluJo SINE Alu 0 312 3 349 277 45 74 chr12 26789351 26789451 -117493038 - MIR SINE MIR -114 148 47 537 282 47 66 chr12 26790449 26790618 -117491871 - L2 LINE L2 0 3313 3151 1828 174 38 0 chr12 26790618 26790911 -117491578 + AluJo SINE Alu 1 304 -8 537 282 47 66 chr12 26790911 26791060 -117491429 - L2 LINE L2 -162 3151 3001 571 329 68 4 chr12 26791213 26791462 -117491027 - L2 LINE L2 -575 2739 2475 559 305 140 25 chr12 26791619 26791983 -117490506 - MER115 DNA AcHobo -287 406 1 3132 163 21 16 chr12 26792095 26792664 -117489825 + L1PB4 LINE L1 5584 6155 -1 314 291 152 7 chr12 26795046 26795197 -117487292 + MER5A DNA MER1_type 9 181 -8 301 161 18 0 chr12 26795468 26795524 -117486965 + MER117 DNA MER1_type 60 116 -81 1858 200 62 62 chr12 26795588 26796102 -117486387 + MLT2B3 LTR ERVL 1 514 -40 206 207 17 0 chr12 26796169 26796227 -117486262 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 334 140 0 0 chr12 26796227 26796277 -117486212 + MLT2B3 LTR ERVL 464 513 -7 760 177 0 15 chr12 26796623 26796753 -117485736 - FLAM_A SINE Alu -5 128 1 203 358 33 8 chr12 26796931 26797051 -117485438 + MIR SINE MIR 5 127 -135 189 196 0 22 chr12 26797299 26797345 -117485144 + L3 LINE CR1 1528 1572 -5 1710 193 50 14 chr12 26797675 26798033 -117484456 + MLT1B LTR MaLR 20 390 0 207 171 0 0 chr12 26800217 26800252 -117482237 + (CAGGC)n Simple_repeat Simple_repeat 2 36 0 218 353 128 5 chr12 26801441 26801628 -117480861 - MIR SINE MIR -6 256 47 806 295 69 49 chr12 26803172 26803935 -117478554 - L2 LINE L2 0 3313 2531 596 263 37 95 chr12 26803920 26804247 -117478242 + L2 LINE L2 2957 3264 -49 * 2297 100 7 0 chr12 26804259 26804558 -117477931 + AluSq SINE Alu 1 301 -12 268 277 43 21 chr12 26804573 26804667 -117477822 - L2 LINE L2 -783 2531 2436 593 251 57 11 chr12 26804668 26804843 -117477646 + HERV16 LTR ERVL 1754 1936 -3060 1369 339 32 11 chr12 26804851 26805477 -117477012 + HERV16 LTR ERVL 3016 3654 -2000 1378 332 46 18 chr12 26805511 26806245 -117476244 + HERV16 LTR ERVL 3758 4534 -1230 936 136 26 0 chr12 26806247 26806402 -117476087 + MER5A DNA MER1_type 1 159 -30 1883 92 18 25 chr12 26806412 26806694 -117475795 - L1MA2 LINE L1 -9 6295 6016 624 251 0 54 chr12 26806961 26807128 -117475361 - MER105 DNA DNA -40 164 7 371 378 0 0 chr12 26807137 26807293 -117475196 + HERV16 LTR ERVL 4729 4884 -880 5362 144 21 11 chr12 26807298 26808152 -117474337 - Tigger1 DNA MER2_type -1554 864 2 374 290 86 67 chr12 26808277 26808631 -117473858 - L1MC/D LINE L1 -413 5708 5397 2483 86 0 0 chr12 26808631 26808933 -117473556 - AluSc SINE Alu -7 302 1 374 290 86 67 chr12 26808933 26809067 -117473422 - L1MC/D LINE L1 -724 5397 5267 385 75 19 0 chr12 26809136 26809189 -117473300 + MSTB1 LTR MaLR 1 54 -378 329 220 289 38 chr12 26809541 26809700 -117472789 - MLT1L LTR MaLR -55 560 362 216 271 57 29 chr12 26810593 26810663 -117471826 - L2 LINE L2 0 3272 3201 257 270 54 0 chr12 26812191 26812265 -117470224 - L1MC4 LINE L1 -1337 6705 6628 342 337 128 0 chr12 26812309 26812496 -117469993 + LTR16A LTR ERVL 16 226 -224 232 162 0 0 chr12 26812627 26812664 -117469825 + LTR16A1 LTR ERVL 419 455 -2 1025 291 66 28 chr12 26812705 26813162 -117469327 + HERV16 LTR ERVL 74 547 -4449 213 94 0 0 chr12 26813217 26813249 -117469240 + (T)n Simple_repeat Simple_repeat 1 32 0 241 28 0 0 chr12 26813363 26813399 -117469090 - L1PA3 LINE L1 -1 6154 6119 2431 84 0 0 chr12 26813619 26813915 -117468574 - AluY SINE Alu -15 296 1 238 88 18 123 chr12 26815071 26815128 -117467361 - MER39 LTR ERV1 -143 564 514 234 316 58 58 chr12 26815833 26816004 -117466485 - MIR SINE MIR -6 256 86 2292 205 80 42 chr12 26816697 26817621 -117464868 + L1ME2 LINE L1 5127 6074 -90 729 79 0 0 chr12 26817621 26817722 -117464767 + (TG)n Simple_repeat Simple_repeat 2 102 0 11350 172 53 14 chr12 26817758 26818305 -117464184 + L1MB1 LINE L1 2874 3398 -2770 2254 169 15 20 chr12 26818305 26818701 -117463788 - MSTD LTR MaLR -2 394 1 11350 172 53 14 chr12 26818701 26820641 -117461848 + L1MB1 LINE L1 3398 5505 -663 207 0 0 0 chr12 26820641 26820664 -117461825 + (CA)n Simple_repeat Simple_repeat 2 24 0 11350 172 53 14 chr12 26820664 26821211 -117461278 + L1MB1 LINE L1 5505 6029 -139 2045 120 3 17 chr12 26821213 26821512 -117460977 - AluSx SINE Alu -5 307 13 614 248 52 19 chr12 26821908 26822095 -117460394 + MIR SINE MIR 25 215 -47 296 48 24 0 chr12 26822808 26822850 -117459639 + (CAT)n Simple_repeat Simple_repeat 1 43 0 316 230 50 20 chr12 26822875 26822975 -117459514 - MIR SINE MIR -20 242 140 1658 160 20 24 chr12 26822976 26823292 -117459197 - AluJo SINE Alu 0 312 1 1818 114 21 17 chr12 26825008 26825298 -117457191 + AluSq SINE Alu 7 297 -16 553 244 14 0 chr12 26827077 26827223 -117455266 + Charlie3 DNA MER1_type 4 113 -2597 28232 127 20 69 chr12 26827526 26832795 -117449694 - L1P LINE L1 -1136 5010 1 1759 178 14 0 chr12 26832830 26833123 -117449366 + AluJb SINE Alu 1 297 -15 187 327 115 9 chr12 26834728 26834841 -117447648 + MIR SINE MIR 22 146 -116 892 291 105 25 chr12 26835016 26835542 -117446947 + L1ME4a LINE L1 5538 6105 -16 1100 273 58 81 chr12 26836547 26836880 -117445609 - L2 LINE L2 -15 3298 2976 2193 121 0 31 chr12 26836880 26837202 -117445287 + AluSx SINE Alu 1 312 0 1100 273 58 81 chr12 26837202 26837301 -117445188 - L2 LINE L2 -337 2976 2876 365 275 231 0 chr12 26837321 26837481 -117445008 - L2 LINE L2 -568 2746 2550 1462 231 20 3 chr12 26837499 26837797 -117444692 + MER82 DNA MER2_type 348 650 -3 763 281 148 75 chr12 26837810 26838296 -117444193 - L2 LINE L2 -980 2334 1885 2090 117 3 13 chr12 26838296 26838595 -117443894 + AluSx SINE Alu 1 296 -16 763 281 148 75 chr12 26838595 26838636 -117443853 - L2 LINE L2 -1429 1885 1848 2558 101 3 3 chr12 26838636 26838982 -117443507 - L1MA1 LINE L1 -4 6298 5953 763 281 148 75 chr12 26838982 26839122 -117443367 - L2 LINE L2 -1466 1848 1617 646 316 21 0 chr12 26839159 26839352 -117443137 - MIR SINE MIR -62 200 4 224 314 144 25 chr12 26840350 26840468 -117442021 - L2 LINE L2 0 3272 3141 380 224 88 41 chr12 26840511 26840658 -117441831 + MIR SINE MIR 64 217 -45 2975 87 30 2 chr12 26841195 26841588 -117440901 + MLT2A1 LTR ERVL 1 404 -40 265 68 68 136 chr12 26841623 26841682 -117440807 + MLT2A1 LTR ERVL 399 453 0 302 290 90 32 chr12 26842046 26842201 -117440288 + L2 LINE L2 3145 3308 -5 1641 206 45 22 chr12 26842334 26842689 -117439800 - MLT1A1 LTR MaLR -1 364 2 769 274 93 0 chr12 26842757 26842983 -117439506 + MIR SINE MIR 16 262 0 21 0 0 0 chr12 26843383 26843404 -117439085 + AT_rich Low_complexity Low_complexity 1 21 0 1996 121 4 0 chr12 26844565 26844837 -117437652 + AluSg SINE Alu 21 293 -17 396 0 0 0 chr12 26844841 26844885 -117437604 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 373 333 133 41 chr12 26845243 26845588 -117436901 + L2 LINE L2 1992 2368 -946 984 314 125 10 chr12 26845778 26846298 -117436191 - L3 LINE CR1 -672 905 326 334 277 110 27 chr12 26846481 26846707 -117435782 - L1ME4a LINE L1 -188 5933 5676 2008 185 0 36 chr12 26846707 26847064 -117435425 - MER2 DNA MER2_type 0 344 1 334 277 110 27 chr12 26847064 26847129 -117435360 - L1ME4a LINE L1 -445 5676 5618 1384 126 17 26 chr12 26847141 26847371 -117435118 + MER50 LTR ERV1 7 234 -500 * 1427 149 80 80 chr12 26847359 26847661 -117434828 + MER50 LTR ERV1 433 734 0 341 227 87 93 chr12 26847758 26847908 -117434581 - MLT1J2 LTR MaLR -30 420 272 1525 283 65 44 chr12 26848132 26848744 -117433745 + MLT2F LTR ERVL 37 661 -2 7623 41 7 0 chr12 26848797 26850085 -117432404 - L1PA5 LINE L1 -8 6146 4846 21 0 0 0 chr12 26852553 26852574 -117429915 + AT_rich Low_complexity Low_complexity 1 21 0 407 217 91 74 chr12 26857115 26857315 -117425174 - MIR SINE MIR -54 208 8 293 295 38 9 chr12 26857831 26857936 -117424553 + MER5A DNA MER1_type 11 118 -71 182 227 120 27 chr12 26858297 26858372 -117424117 - MIR SINE MIR -37 225 144 551 130 9 65 chr12 26858421 26858529 -117423960 + MSTB1 LTR MaLR 1 102 -330 22 0 0 0 chr12 26858529 26858551 -117423938 + GC_rich Low_complexity Low_complexity 1 22 0 1926 161 30 134 chr12 26859286 26859496 -117422993 + MSTB2 LTR MaLR 1 129 -328 2189 115 3 10 chr12 26859496 26859801 -117422688 - AluSp SINE Alu -8 305 3 1926 161 30 134 chr12 26859801 26860098 -117422391 + MSTB2 LTR MaLR 129 455 -2 211 246 18 18 chr12 26860103 26860160 -117422329 - MIR SINE MIR -180 82 26 * 230 362 135 29 chr12 26860158 26860292 -117422197 - L2 LINE L2 -2420 894 776 1023 148 28 0 chr12 26860292 26860468 -117422021 + L1MB3 LINE L1 6003 6183 0 230 362 135 29 chr12 26860468 26860792 -117421697 - L2 LINE L2 -2538 776 380 1407 202 145 26 chr12 26860792 26861144 -117421345 + MSTD LTR MaLR 3 396 0 230 362 135 29 chr12 26861144 26861167 -117421322 - L2 LINE L2 -2934 380 361 359 322 81 27 chr12 26861575 26861724 -117420765 - L2 LINE L2 0 3272 3116 1797 169 80 0 chr12 26862179 26862493 -117419996 - MER44D DNA MER2_type 0 609 1 2187 101 7 7 chr12 26863235 26863532 -117418957 + AluSq SINE Alu 1 297 -16 576 267 26 26 chr12 26863606 26863797 -117418692 + MIR3 SINE MIR 16 206 -2 544 281 90 24 chr12 26864292 26864522 -117417967 - MIR SINE MIR -19 243 4 965 200 6 0 chr12 26865601 26865766 -117416723 + AluJo SINE Alu 1 166 -146 428 256 0 0 chr12 26865766 26865844 -117416645 + AluSc SINE Alu 85 162 -147 1154 206 0 0 chr12 26865844 26866062 -117416427 + AluJo SINE Alu 85 302 -10 953 182 0 6 chr12 26868396 26868555 -117413934 + AluJb SINE Alu 131 288 -24 250 285 170 63 chr12 26869047 26869430 -117413059 + LTR67 LTR ERVL 122 545 -12 702 265 78 0 chr12 26869736 26869902 -117412587 - MER63A DNA MER1_type -31 179 1 197 273 45 30 chr12 26869956 26870022 -117412467 - MIR SINE MIR -102 106 40 2356 87 7 0 chr12 26870886 26871185 -117411304 + AluSx SINE Alu 1 301 -11 2124 113 30 13 chr12 26871555 26871857 -117410632 - AluSp SINE Alu -5 308 2 952 180 73 22 chr12 26871863 26872041 -117410448 + MER5A DNA MER1_type 3 189 0 2263 78 17 3 chr12 26874037 26874330 -117408159 + AluSq SINE Alu 1 297 -16 3603 109 26 43 chr12 26876109 26876642 -117405847 + MER1A DNA MER1_type 4 527 0 870 87 0 39 chr12 26876757 26876884 -117405605 + L1PA8 LINE L1 6043 6164 -8 681 217 66 57 chr12 26877313 26877525 -117404964 + L2 LINE L2 3100 3313 0 274 192 0 0 chr12 26877568 26877620 -117404869 - MIR SINE MIR -164 98 47 231 343 111 0 chr12 26881292 26881400 -117401089 - MIR3 SINE MIR -1 207 88 542 257 53 26 chr12 26881574 26881726 -117400763 - MIR SINE MIR -98 164 9 1444 273 87 26 chr12 26881826 26882617 -117399872 - L2 LINE L2 0 3313 2467 1375 275 71 80 chr12 26882742 26883459 -117399030 + MER21B LTR ERV1 29 739 -124 2247 97 0 3 chr12 26883753 26884076 -117398413 - AluSg SINE Alu 0 310 1 180 171 146 0 chr12 26884417 26884458 -117398031 - MIR3 SINE MIR -26 182 136 * 209 274 53 42 chr12 26884444 26884539 -117397950 - L2 LINE L2 -1 3312 3217 224 326 53 23 chr12 26885293 26885425 -117397064 + L2 LINE L2 3176 3311 -2 376 218 79 0 chr12 26885516 26885617 -117396872 - MIR SINE MIR -65 197 89 596 133 0 0 chr12 26886752 26886835 -117395654 - 5S rRNA rRNA -38 83 1 183 354 69 31 chr12 26887417 26887547 -117394942 + L2 LINE L2 3137 3271 -1 296 260 164 34 chr12 26887705 26887851 -117394638 - MIR SINE MIR -10 252 88 305 301 0 0 chr12 26888860 26888943 -117393546 - L2 LINE L2 -6 3307 3225 1430 147 57 8 chr12 26888949 26889194 -117393295 + AluJb SINE Alu 32 288 -24 192 357 66 29 chr12 26889538 26889782 -117392707 + L2 LINE L2 2521 2773 -541 194 33 67 0 chr12 26889791 26889821 -117392668 + CT-rich Low_complexity Low_complexity 4 35 0 188 350 52 21 chr12 26889821 26889835 -117392654 + L2 LINE L2 2752 2764 -550 1733 169 44 0 chr12 26889835 26890130 -117392359 - AluSx SINE Alu -4 308 1 188 350 52 21 chr12 26890130 26890212 -117392277 + L2 LINE L2 2764 2851 -463 256 358 169 0 chr12 26890304 26890505 -117391984 + L2 LINE L2 3033 3267 -5 232 333 89 7 chr12 26890758 26890893 -117391596 + MIR SINE MIR 4 149 -113 180 357 70 28 chr12 26890980 26891123 -117391366 + L2 LINE L2 2952 3100 -172 463 287 163 27 chr12 26891129 26891678 -117390811 - L2 LINE L2 0 3313 2680 684 194 6 44 chr12 26892244 26892404 -117390085 + MIR SINE MIR 79 232 -30 207 286 0 14 chr12 26893564 26893634 -117388855 + A-rich Low_complexity Low_complexity 2 70 0 4289 133 14 2 chr12 26893974 26894599 -117387890 + MER41B LTR ERV1 3 635 0 2238 102 0 3 chr12 26894600 26894893 -117387596 - AluSg SINE Alu -17 293 2 933 180 73 22 chr12 26894899 26895077 -117387412 + MER5A DNA MER1_type 3 189 0 803 158 8 0 chr12 26896646 26896766 -117385723 - FLAM_C SINE Alu -22 121 1 1406 237 69 89 chr12 26897026 26897677 -117384812 + MER21B LTR ERV1 98 735 -128 2883 13 0 0 chr12 26898024 26898335 -117384154 + AluY SINE Alu 1 311 0 629 321 186 14 chr12 26898672 26899102 -117383387 + L2 LINE L2 2809 3312 -1 336 322 142 11 chr12 26899323 26899506 -117382983 + MIR SINE MIR 18 224 -38 221 171 24 0 chr12 26901506 26901547 -117380942 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 190 357 102 10 chr12 26901557 26901655 -117380834 + L2 LINE L2 3158 3264 -8 2017 160 0 0 chr12 26902543 26902849 -117379640 + AluSx SINE Alu 1 306 -6 314 176 0 0 chr12 26902994 26903045 -117379444 + MSTB LTR MaLR 1 51 -375 198 147 0 0 chr12 26903063 26903097 -117379392 - MIR SINE MIR -111 151 118 2621 157 36 7 chr12 26903097 26903511 -117378978 + MSTB LTR MaLR 1 426 0 2091 99 0 44 chr12 26903621 26903956 -117378533 - AluY SINE Alu 0 322 1 239 305 130 48 chr12 26904826 26905095 -117377394 + L2 LINE L2 1890 2180 -1134 225 312 84 59 chr12 26905182 26905384 -117377105 - MIR SINE MIR -40 222 16 1232 134 51 51 chr12 26909808 26910025 -117372464 - AluJb SINE Alu -10 302 86 2063 222 29 2 chr12 26910184 26910639 -117371850 + L2 LINE L2 2335 2801 -513 504 146 45 0 chr12 26910641 26910730 -117371759 - MER53 DNA DNA 0 189 97 702 333 35 32 chr12 26910744 26911092 -117371397 + L2 LINE L2 2804 3152 -161 406 282 40 20 chr12 26911243 26911392 -117371097 + L2 LINE L2 3162 3313 0 3985 154 44 11 chr12 26911417 26912178 -117370311 + L1MB8 LINE L1 5456 6239 0 247 330 18 49 chr12 26912548 26912692 -117369797 - MIR SINE MIR -51 157 17 189 0 0 0 chr12 26912877 26912898 -117369591 + (TTC)n Simple_repeat Simple_repeat 2 22 0 2351 100 7 3 chr12 26912901 26913211 -117369278 - AluSx SINE Alu -1 311 1 507 264 188 4 chr12 26913407 26913646 -117368843 + L2 LINE L2 2188 2470 -844 245 260 40 90 chr12 26913876 26913976 -117368513 + L2 LINE L2 3219 3313 0 23 68 0 0 chr12 26914893 26914937 -117367552 + AT_rich Low_complexity Low_complexity 1 44 0 442 344 49 9 chr12 26915397 26915621 -117366868 - MIR SINE MIR -6 256 24 305 306 146 30 chr12 26917156 26917355 -117365134 + MIR SINE MIR 28 249 -13 649 315 104 67 chr12 26917631 26918960 -117363529 + L2 LINE L2 1817 3205 -67 360 0 0 0 chr12 26919403 26919443 -117363046 + (TG)n Simple_repeat Simple_repeat 2 41 0 2263 110 0 0 chr12 26919486 26919787 -117362702 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr12 26920390 26920412 -117362077 + AT_rich Low_complexity Low_complexity 1 22 0 216 289 0 0 chr12 26920432 26920484 -117362005 + L2 LINE L2 3217 3268 -4 273 348 145 0 chr12 26920852 26920990 -117361499 - MIR3 SINE MIR -22 186 29 30 45 0 0 chr12 26921620 26921664 -117360825 + AT_rich Low_complexity Low_complexity 1 44 0 220 232 20 0 chr12 26921677 26921776 -117360713 + (TA)n Simple_repeat Simple_repeat 2 102 0 279 243 165 54 chr12 26922113 26922284 -117360205 + MIR3 SINE MIR 3 186 -59 2155 127 3 0 chr12 26922295 26922587 -117359902 + AluSx SINE Alu 3 295 -17 377 363 61 31 chr12 26924236 26924720 -117357769 - L2 LINE L2 -43 3229 2728 867 205 12 0 chr12 26924809 26924975 -117357514 + FRAM SINE Alu 1 167 -9 369 340 130 42 chr12 26925127 26925504 -117356985 - L2 LINE L2 -341 2973 2564 2322 122 0 0 chr12 26926190 26926502 -117355987 + AluSq SINE Alu 1 312 -1 299 234 0 85 chr12 26926575 26926669 -117355820 + MIR SINE MIR 176 261 -1 1827 128 0 0 chr12 26927065 26927322 -117355167 + AluSx SINE Alu 52 308 -4 28 29 0 0 chr12 26927422 26927457 -117355032 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chr12 26927768 26927794 -117354695 + (T)n Simple_repeat Simple_repeat 1 26 0 1114 140 45 0 chr12 26928649 26928828 -117353661 - MER20 DNA MER1_type -4 215 29 565 222 41 41 chr12 26929076 26929247 -117353242 + MIR SINE MIR 72 242 -20 666 327 62 48 chr12 26929248 26929606 -117352883 + L2 LINE L2 2910 3272 0 331 321 18 18 chr12 26930604 26930713 -117351776 + L3 LINE CR1 401 509 -1068 308 250 95 25 chr12 26930858 26931034 -117351455 - MER58C DNA MER1_type 0 215 1 189 372 47 14 chr12 26931244 26931392 -117351097 + L3 LINE CR1 816 968 -609 446 219 69 94 chr12 26931863 26932096 -117350393 - L3 LINE CR1 -205 1372 1146 211 396 19 9 chr12 26932230 26932336 -117350153 - MIR3 SINE MIR -87 121 15 354 23 0 0 chr12 26935391 26935434 -117347055 + (CA)n Simple_repeat Simple_repeat 2 44 0 260 288 0 14 chr12 26938253 26938326 -117344163 + MER5A DNA MER1_type 38 109 -80 25 51 0 0 chr12 26938453 26938492 -117343997 + AT_rich Low_complexity Low_complexity 1 39 0 1950 141 43 27 chr12 26938712 26939081 -117343408 + THE1C LTR MaLR 1 375 0 423 182 0 0 chr12 26939148 26939225 -117343264 + L1MA10 LINE L1 6256 6332 -2 458 305 86 10 chr12 26940829 26941026 -117341463 + MIR SINE MIR 13 224 -38 29 70 0 0 chr12 26941028 26941085 -117341404 + AT_rich Low_complexity Low_complexity 1 57 0 24 77 0 0 chr12 26941197 26941249 -117341240 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr12 26942313 26942335 -117340154 + AT_rich Low_complexity Low_complexity 1 22 0 212 205 26 8 chr12 26943444 26943561 -117338928 + (TTAA)n Simple_repeat Simple_repeat 1 119 0 299 197 24 39 chr12 26943583 26943710 -117338779 + (TTAA)n Simple_repeat Simple_repeat 1 125 0 385 364 40 11 chr12 26943780 26943956 -117338533 + MIR3 SINE MIR 16 196 -12 1396 79 0 0 chr12 26945919 26946096 -117336393 - AluSg/x SINE Alu -2 310 134 1854 172 0 3 chr12 26946096 26946399 -117336090 - AluSx SINE Alu -9 303 2 802 145 0 0 chr12 26946450 26946567 -117335922 - FLAM_C SINE Alu -10 133 17 23 33 0 0 chr12 26946603 26946633 -117335856 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 26946881 26946906 -117335583 + AT_rich Low_complexity Low_complexity 1 25 0 216 269 19 0 chr12 26947069 26947121 -117335368 - L2 LINE L2 -93 3220 3168 21 57 0 0 chr12 26947406 26947441 -117335048 + AT_rich Low_complexity Low_complexity 1 35 0 254 250 0 33 chr12 26947565 26947625 -117334864 + MER5A DNA MER1_type 27 84 -105 313 229 104 90 chr12 26947644 26947788 -117334701 + MIR SINE MIR 117 262 0 335 280 11 11 chr12 26948118 26948211 -117334278 + MIR3 SINE MIR 110 202 -6 349 247 86 0 chr12 26948737 26948818 -117333671 - MIR SINE MIR -14 248 161 21 0 0 0 chr12 26949595 26949616 -117332873 + AT_rich Low_complexity Low_complexity 1 21 0 192 468 8 0 chr12 26949942 26950066 -117332423 - L3b LINE CR1 -48 1535 1411 2213 102 0 6 chr12 26951204 26951517 -117330972 - AluY SINE Alu 0 311 1 30 45 0 0 chr12 26951905 26951949 -117330540 + AT_rich Low_complexity Low_complexity 1 44 0 249 264 59 26 chr12 26954086 26954199 -117328290 + MIR SINE MIR 29 143 -65 2048 105 14 0 chr12 26954228 26954514 -117327975 - AluSx SINE Alu -20 292 3 1679 101 3 5 chr12 26954515 26954848 -117327641 - L1P4 LINE L1 -664 5501 5170 34 0 0 0 chr12 26957588 26957622 -117324867 + AT_rich Low_complexity Low_complexity 1 34 0 720 191 0 0 chr12 26958124 26958255 -117324234 + FLAM_A SINE Alu 1 131 -2 2230 82 0 0 chr12 26958891 26959199 -117323290 + AluSg SINE Alu 1 308 0 4412 114 11 1 chr12 26959201 26959858 -117322631 + L1PA15 LINE L1 5490 6152 -13 32 26 0 0 chr12 26960052 26960091 -117322398 + AT_rich Low_complexity Low_complexity 1 39 0 577 309 97 47 chr12 26960260 26961133 -117321356 + L1MC4a LINE L1 3376 4292 -1854 413 279 90 33 chr12 26961143 26961387 -117321102 + L1MC4a LINE L1 5815 6072 -1736 722 223 211 57 chr12 26961498 26962108 -117320381 + LTR50 LTR ERVL 3 793 -2 21 0 0 0 chr12 26962602 26962623 -117319866 + AT_rich Low_complexity Low_complexity 1 21 0 201 333 63 18 chr12 26963454 26963565 -117318924 + L3 LINE CR1 1389 1504 -73 2590 227 146 13 chr12 26963604 26964422 -117318067 + L1MC4a LINE L1 6818 7743 -65 262 261 19 137 chr12 26965317 26965478 -117317011 - L2 LINE L2 -4 3309 3168 22 56 0 0 chr12 26965765 26965801 -117316688 + AT_rich Low_complexity Low_complexity 1 36 0 1987 100 0 0 chr12 26965915 26966185 -117316304 + AluSx SINE Alu 7 276 -36 211 271 0 17 chr12 26966333 26966392 -117316097 - L2 LINE L2 -5 3308 3251 188 297 78 0 chr12 26966768 26966832 -117315657 - L2 LINE L2 0 3272 3204 209 289 0 0 chr12 26969409 26969461 -117313028 + L2 LINE L2 3262 3313 0 73 62 0 0 chr12 26969543 26969672 -117312817 + AT_rich Low_complexity Low_complexity 1 129 0 184 282 0 0 chr12 26970327 26970366 -117312123 - L2 LINE L2 -12 3260 3222 2013 108 14 3 chr12 26970783 26971079 -117311410 - AluSc SINE Alu -10 299 1 32 43 0 0 chr12 26971275 26971321 -117311168 + AT_rich Low_complexity Low_complexity 1 46 0 436 273 39 23 chr12 26973647 26973775 -117308714 - L2 LINE L2 0 3313 3184 414 286 56 19 chr12 26975747 26975908 -117306581 + MLT1L LTR MaLR 112 278 -337 216 0 0 0 chr12 26975941 26975965 -117306524 + (CAA)n Simple_repeat Simple_repeat 2 25 0 395 298 90 34 chr12 26976020 26976296 -117306193 + MLT1L LTR MaLR 238 509 -2 452 312 196 3 chr12 26976312 26976613 -117305876 + L3 LINE CR1 766 1124 -453 283 314 192 12 chr12 26976878 26977050 -117305439 + L3 LINE CR1 1374 1576 -1 193 299 91 98 chr12 26977094 26977348 -117305141 - L2 LINE L2 -34 3238 2987 273 311 61 110 chr12 26977354 26977898 -117304591 + L2 LINE L2 2245 2761 -553 696 266 11 6 chr12 26980209 26980386 -117302103 - MIR SINE MIR -28 234 57 367 344 62 10 chr12 26980435 26980743 -117301746 + MARNA DNA Mariner 10 333 -253 3456 272 143 9 chr12 26980798 26982087 -117300402 - L2 LINE L2 -755 2559 1099 400 336 34 20 chr12 26982748 26982897 -117299592 + L2 LINE L2 3121 3271 -1 273 300 46 39 chr12 26985146 26985276 -117297213 - L2 LINE L2 -31 3282 3152 1490 229 39 30 chr12 26985547 26986010 -117296479 + MLT1C LTR MaLR 1 467 0 423 0 0 0 chr12 26987089 26987136 -117295353 + (CA)n Simple_repeat Simple_repeat 1 47 0 616 229 20 85 chr12 26987709 26987910 -117294579 + MER5A DNA MER1_type 2 189 0 1218 199 105 46 chr12 26988218 26988642 -117293847 + MSTB2 LTR MaLR 1 457 0 27 81 0 0 chr12 26988684 26988746 -117293743 + AT_rich Low_complexity Low_complexity 1 62 0 580 246 69 23 chr12 26989547 26989722 -117292767 + L2 LINE L2 3116 3298 -15 519 60 0 0 chr12 26989724 26989791 -117292698 + (TGGA)n Simple_repeat Simple_repeat 1 67 0 2114 105 0 11 chr12 26989916 26990233 -117292256 - AluSc SINE Alu 0 314 1 211 383 31 23 chr12 26990501 26990629 -117291860 + MIR SINE MIR 56 184 -78 234 0 0 0 chr12 26991072 26991098 -117291391 + (A)n Simple_repeat Simple_repeat 1 26 0 207 286 0 14 chr12 26991363 26991433 -117291056 + A-rich Low_complexity Low_complexity 2 70 0 4473 105 3 0 chr12 26991773 26992404 -117290085 + MER41B LTR ERV1 3 635 0 2186 102 3 3 chr12 26992405 26992698 -117289791 - AluSg SINE Alu -17 293 1 1052 264 139 20 chr12 26992708 26993381 -117289108 - L2 LINE L2 -8 3305 2540 491 281 89 55 chr12 26993435 26993670 -117288819 + MIR SINE MIR 9 251 -11 312 325 75 42 chr12 26993761 26993973 -117288516 - L2 LINE L2 -556 2758 2540 421 303 123 66 chr12 26995154 26995794 -117286695 + L2 LINE L2 1824 2500 -814 264 325 67 8 chr12 26996352 26996472 -117286017 + MER5A DNA MER1_type 7 133 -56 1066 211 0 19 chr12 26997068 26997276 -117285213 + MER58A DNA MER1_type 2 205 -19 531 208 0 0 chr12 26997349 26997474 -117285015 + (TA)n Simple_repeat Simple_repeat 1 125 0 1157 149 0 0 chr12 26997882 26998079 -117284410 - AluSx SINE Alu 0 312 116 254 61 0 0 chr12 26998079 26998112 -117284377 + MADE1 DNA Mariner 5 37 -43 915 117 0 0 chr12 26998120 26998240 -117284249 - AluSx SINE Alu -192 121 2 2319 109 0 0 chr12 26998393 26998696 -117283793 - AluSx SINE Alu -6 306 4 2221 92 7 0 chr12 26999112 26999440 -117283049 + AluSp SINE Alu 1 330 0 2628 148 144 11 chr12 26999829 27000294 -117282195 - MER1A DNA MER1_type 0 527 1 309 265 69 10 chr12 27000364 27000466 -117282023 - L2 LINE L2 -33 3280 3173 1850 270 62 8 chr12 27000625 27001236 -117281253 - L2 LINE L2 -939 2375 1732 219 235 0 0 chr12 27001313 27001364 -117281125 + CT-rich Low_complexity Low_complexity 2 52 0 289 208 26 26 chr12 27001610 27001687 -117280802 + L2 LINE L2 3188 3264 -49 209 231 19 19 chr12 27002416 27002468 -117280021 - MIR SINE MIR -56 152 101 336 83 0 0 chr12 27003073 27003121 -117279368 + (TC)n Simple_repeat Simple_repeat 1 48 0 461 331 131 38 chr12 27004647 27004991 -117277498 + L2 LINE L2 2891 3266 -6 643 319 100 24 chr12 27005071 27005482 -117277007 + L2 LINE L2 2871 3312 -1 806 284 43 30 chr12 27005517 27005820 -117276669 + MER102b DNA MER1_type 6 312 -29 237 293 0 0 chr12 27006241 27006323 -117276166 + L1M3 LINE L1 5350 5431 -740 1160 214 31 14 chr12 27006458 27006752 -117275737 + L1ME4a LINE L1 5566 5864 -257 2018 141 0 0 chr12 27008597 27008914 -117273575 - AluSx SINE Alu 0 317 1 2786 7 0 3 chr12 27010239 27010546 -117271943 + AluYa5 SINE Alu 1 306 -5 249 250 56 118 chr12 27011423 27011567 -117270922 - L2 LINE L2 -18 3295 3161 28 0 0 0 chr12 27012234 27012262 -117270227 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr12 27014983 27015017 -117267472 + AT_rich Low_complexity Low_complexity 1 34 0 732 191 0 0 chr12 27015520 27015651 -117266838 + FLAM_A SINE Alu 1 131 -2 2386 79 0 16 chr12 27016287 27016602 -117265887 + AluSg SINE Alu 1 310 0 229 333 12 0 chr12 27018454 27018535 -117263954 + (TATG)n Simple_repeat Simple_repeat 1 82 0 312 319 44 69 chr12 27018877 27019081 -117263408 + MIR SINE MIR 3 201 -61 311 178 22 44 chr12 27019803 27019893 -117262596 + L1MC4 LINE L1 6615 6702 -1340 328 278 158 13 chr12 27020102 27020336 -117262153 + L1MC/D LINE L1 5549 5816 -1992 2286 81 0 13 chr12 27020444 27020742 -117261747 - AluY SINE Alu -17 294 1 32 43 0 0 chr12 27020938 27020984 -117261505 + AT_rich Low_complexity Low_complexity 1 46 0 432 273 39 23 chr12 27023311 27023439 -117259050 - L2 LINE L2 0 3313 3184 467 308 22 33 chr12 27024555 27024737 -117257752 - MIR SINE MIR -51 211 32 719 244 112 0 chr12 27025165 27025362 -117257127 + MIR SINE MIR 19 237 -25 192 379 57 36 chr12 27026090 27026230 -117256259 - L2 LINE L2 -3 3269 3127 2158 108 3 3 chr12 27026258 27026554 -117255935 + AluSq SINE Alu 1 296 -17 778 315 108 51 chr12 27026724 27026929 -117255560 - L2 LINE L2 -403 2911 2719 2585 65 0 0 chr12 27026929 27027236 -117255253 + AluY SINE Alu 1 307 -4 778 315 108 51 chr12 27027236 27027957 -117254532 - L2 LINE L2 -595 2719 1932 368 211 33 0 chr12 27028274 27028364 -117254125 - L1MA7 LINE L1 -448 5843 5751 1205 146 132 109 chr12 27028374 27028731 -117253758 + L1MA6 LINE L1 5927 6300 0 1510 119 13 0 chr12 27029189 27029425 -117253064 + L1MA5 LINE L1 6043 6281 -19 32 0 0 0 chr12 27030138 27030170 -117252319 + AT_rich Low_complexity Low_complexity 1 32 0 2254 123 0 0 chr12 27030215 27030523 -117251966 + AluSx SINE Alu 1 308 -4 635 210 6 34 chr12 27031177 27031353 -117251136 + L1MA10 LINE L1 6160 6330 -4 373 269 76 34 chr12 27031905 27032024 -117250465 - MIR SINE MIR -111 151 28 2291 55 0 4 chr12 27032414 27032688 -117249801 + AluY SINE Alu 26 298 -13 2446 66 0 3 chr12 27032873 27033177 -117249312 - AluY SINE Alu -4 307 5 2208 80 0 77 chr12 27033437 27033762 -117248727 - AluSx SINE Alu -10 302 3 756 213 13 13 chr12 27034567 27034717 -117247772 - FRAM SINE Alu -14 162 13 865 215 44 22 chr12 27035117 27035345 -117247144 + MIR SINE MIR 30 262 0 270 0 0 0 chr12 27038919 27038949 -117243540 + (CA)n Simple_repeat Simple_repeat 2 31 0 509 293 94 0 chr12 27039313 27039508 -117242981 + MIR SINE MIR 35 248 -14 782 274 114 52 chr12 27040100 27040694 -117241795 + L1ME3 LINE L1 5254 5884 -278 398 319 48 110 chr12 27041078 27041514 -117240975 + L2 LINE L2 2864 3272 0 850 119 0 16 chr12 27041827 27041953 -117240536 + FLAM_C SINE Alu 13 136 -7 1436 204 6 44 chr12 27041955 27042273 -117240216 + AluJo SINE Alu 1 306 -6 351 78 0 0 chr12 27043592 27043643 -117238846 + (TG)n Simple_repeat Simple_repeat 2 52 0 524 219 16 60 chr12 27043811 27043994 -117238495 + MER104 DNA MER2_type 4 178 -2 3656 143 40 47 chr12 27044404 27045144 -117237345 + L1MB7 LINE L1 5441 6175 -9 414 0 0 0 chr12 27045687 27045733 -117236756 + (TG)n Simple_repeat Simple_repeat 1 46 0 188 275 44 55 chr12 27046989 27047080 -117235409 + L2 LINE L2 2990 3079 -193 4643 75 0 90 chr12 27047792 27048522 -117233967 + MER4A LTR ERV1 1 664 0 2159 82 0 66 chr12 27048550 27048869 -117233620 - AluSg1 SINE Alu -11 298 1 270 0 0 0 chr12 27049477 27049507 -117232982 + (CA)n Simple_repeat Simple_repeat 1 30 0 1795 149 6 51 chr12 27051558 27051873 -117230616 + AluJb SINE Alu 3 303 -9 213 175 0 0 chr12 27051878 27051918 -117230571 + GA-rich Low_complexity Low_complexity 3 42 0 1181 57 6 0 chr12 27051924 27052082 -117230407 + (GGAAA)n Simple_repeat Simple_repeat 5 163 0 1052 30 8 0 chr12 27052227 27052359 -117230130 + (GGAAA)n Simple_repeat Simple_repeat 4 136 0 25 31 0 0 chr12 27052594 27052626 -117229863 + AT_rich Low_complexity Low_complexity 1 32 0 6003 106 8 20 chr12 27053216 27053550 -117228939 + L1PA15 LINE L1 5170 5506 -659 2076 125 0 0 chr12 27053550 27053858 -117228631 + AluSx SINE Alu 3 310 0 6003 106 8 20 chr12 27053858 27054517 -117227972 + L1PA15 LINE L1 5506 6152 -13 32 26 0 0 chr12 27054711 27054750 -117227739 + AT_rich Low_complexity Low_complexity 1 39 0 498 305 100 49 chr12 27054919 27055792 -117226697 + L1MC4a LINE L1 3376 4292 -1854 397 279 90 33 chr12 27055802 27056046 -117226443 + L1MC4a LINE L1 5815 6072 -1736 737 223 211 57 chr12 27056157 27056767 -117225722 + LTR50 LTR ERVL 3 793 -2 21 0 0 0 chr12 27057261 27057282 -117225207 + AT_rich Low_complexity Low_complexity 1 21 0 228 349 0 40 chr12 27058319 27058438 -117224051 + MER5B DNA MER1_type 2 127 -62 291 327 73 33 chr12 27058501 27058651 -117223838 + MIR SINE MIR 48 203 -59 1171 303 70 44 chr12 27062195 27062972 -117219517 - L2 LINE L2 -182 3131 2333 1481 282 36 39 chr12 27064842 27065430 -117217059 + L2 LINE L2 2382 2967 -347 414 244 136 99 chr12 27065579 27065800 -117216689 + MIR SINE MIR 29 257 -5 467 251 16 96 chr12 27065803 27065990 -117216499 + L2 LINE L2 3130 3301 -12 261 0 0 0 chr12 27067647 27067676 -117214813 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr12 27067988 27068018 -117214471 + AT_rich Low_complexity Low_complexity 1 30 0 1131 164 0 30 chr12 27068377 27068602 -117213887 - AluJb SINE Alu -16 296 1 2132 118 7 0 chr12 27068681 27068978 -117213511 - AluSx SINE Alu -13 299 1 1935 141 72 74 chr12 27069502 27069893 -117212596 + MLT1B LTR MaLR 1 390 0 1222 147 52 9 chr12 27070933 27071165 -117211324 + L1MA6 LINE L1 6052 6293 -7 514 325 120 38 chr12 27072414 27073174 -117209315 - L2 LINE L2 -2280 1034 213 514 279 16 0 chr12 27074087 27074216 -117208273 + MIR SINE MIR 1 131 -131 367 262 18 110 chr12 27074499 27074557 -117207932 + MIR SINE MIR 36 98 -164 2290 114 0 0 chr12 27074557 27074865 -117207624 - AluSg SINE Alu 0 310 3 367 262 18 110 chr12 27074865 27074970 -117207519 + MIR SINE MIR 98 184 -78 377 286 36 9 chr12 27075950 27076062 -117206427 - L2 LINE L2 -14 3299 3185 2198 104 0 29 chr12 27077018 27077327 -117205162 + AluSq SINE Alu 1 300 -13 626 236 89 108 chr12 27078357 27078616 -117203873 + MIR SINE MIR 7 260 -2 189 0 0 0 chr12 27079126 27079147 -117203342 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 183 42 0 0 chr12 27079348 27079372 -117203117 + (TG)n Simple_repeat Simple_repeat 1 24 0 299 113 19 0 chr12 27079374 27079427 -117203062 + GA-rich Low_complexity Low_complexity 2 55 0 1908 129 61 0 chr12 27079496 27079776 -117202713 + AluSx SINE Alu 1 297 -15 189 326 0 0 chr12 27080455 27080501 -117201988 - L3 LINE CR1 -11 1566 1521 417 110 0 0 chr12 27080551 27080624 -117201865 + (CA)n Simple_repeat Simple_repeat 1 73 0 197 274 113 0 chr12 27080850 27080912 -117201577 + MIR SINE MIR 82 150 -58 2142 160 47 89 chr12 27081123 27081616 -117200873 + MLT1D LTR MaLR 1 472 -33 432 200 10 11 chr12 27082124 27082228 -117200261 - L1MA4A LINE L1 -1 6274 6053 * 1582 132 26 32 chr12 27082225 27082535 -117199954 - L1MA4A LINE L1 -180 6123 5816 3987 166 8 6 chr12 27082541 27083734 -117198755 + L1MA4A LINE L1 4639 5833 -470 494 259 0 18 chr12 27083972 27084084 -117198405 + MIR3 SINE MIR 51 160 -48 194 344 0 22 chr12 27084505 27084595 -117197894 + L2 LINE L2 3226 3313 0 31 44 0 0 chr12 27085811 27085856 -117196633 + AT_rich Low_complexity Low_complexity 1 45 0 28 29 0 0 chr12 27086203 27086238 -117196251 + AT_rich Low_complexity Low_complexity 1 35 0 255 103 0 0 chr12 27086683 27086722 -117195767 + (TTATA)n Simple_repeat Simple_repeat 2 40 0 390 354 43 10 chr12 27087238 27087447 -117195042 - MIR SINE MIR -16 246 31 1722 147 41 17 chr12 27088182 27088474 -117194015 - AluJo SINE Alu -13 299 1 246 105 0 0 chr12 27088708 27088746 -117193743 - L1MA3 LINE L1 0 6305 6268 206 275 8 133 chr12 27088746 27088866 -117193623 - L3 LINE CR1 -300 1277 1173 228 250 33 17 chr12 27088871 27088931 -117193558 + L3 LINE CR1 1445 1505 -72 486 286 75 12 chr12 27088962 27089203 -117193286 + MER112 DNA MER1_type 1 256 0 2252 90 3 0 chr12 27089497 27089786 -117192703 + AluY SINE Alu 1 290 -21 1030 180 30 30 chr12 27090176 27090376 -117192113 + MER3 DNA MER1_type 1 200 -9 1074 250 0 0 chr12 27090393 27090613 -117191876 - MER58A DNA MER1_type -1 223 4 442 234 9 0 chr12 27090785 27090892 -117191597 - L1PB4 LINE L1 -2 6154 6047 261 0 0 0 chr12 27092559 27092588 -117189901 + (TG)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr12 27092765 27092785 -117189704 + (A)n Simple_repeat Simple_repeat 1 20 0 1926 147 0 10 chr12 27092789 27093089 -117189400 + AluSx SINE Alu 1 297 -15 776 265 40 16 chr12 27093222 27093471 -117189018 + MLT1L LTR MaLR 3 257 -358 509 268 16 0 chr12 27093634 27093761 -117188728 + MLT1L LTR MaLR 485 613 -2 349 325 97 34 chr12 27094255 27094461 -117188028 + MIR SINE MIR 40 258 -4 2019 294 145 25 chr12 27094497 27095282 -117187207 + L2 LINE L2 1915 2605 -708 1571 174 65 29 chr12 27095282 27095633 -117186856 - MLT1A1 LTR MaLR 0 365 2 2019 294 145 25 chr12 27095633 27096092 -117186397 + L2 LINE L2 2605 3309 -4 2256 164 0 18 chr12 27096939 27097336 -117185153 + MLT1B LTR MaLR 1 390 0 28 29 0 0 chr12 27097697 27097732 -117184757 + AT_rich Low_complexity Low_complexity 1 35 0 1818 27 0 5 chr12 27098701 27098921 -117183568 + L1PA5 LINE L1 5935 6153 -1 2023 105 51 0 chr12 27099282 27099558 -117182931 + AluSc SINE Alu 1 290 -19 239 234 0 0 chr12 27099681 27099728 -117182761 + (CA)n Simple_repeat Simple_repeat 2 48 0 698 296 74 49 chr12 27099925 27100441 -117182048 + HAL1 LINE L1 906 1449 -1058 1951 194 30 22 chr12 27100441 27100904 -117181585 + MLT1C LTR MaLR 1 467 0 698 296 74 49 chr12 27100904 27101161 -117181328 + HAL1 LINE L1 1449 1698 -809 617 69 11 0 chr12 27101458 27101545 -117180944 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 795 186 55 0 chr12 27101672 27101817 -117180672 + FAM SINE Alu 1 40 -9 407 35 0 35 chr12 27101817 27101875 -117180614 + (GGAGA)n Simple_repeat Simple_repeat 2 57 0 300 297 85 76 chr12 27101998 27102234 -117180255 + L1M2 LINE L1 896 1133 -5716 210 37 0 0 chr12 27102277 27102304 -117180185 + (GGGGA)n Simple_repeat Simple_repeat 5 31 0 744 87 11 62 chr12 27102334 27102709 -117179780 + (GGAGA)n Simple_repeat Simple_repeat 1 355 0 645 175 35 0 chr12 27102702 27102873 -117179616 + GA-rich Low_complexity Low_complexity 2 178 0 * 655 0 53 0 chr12 27104250 27104345 -117178144 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 0 0 0 chr12 27104511 27104532 -117177957 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr12 27104833 27104881 -117177608 + AT_rich Low_complexity Low_complexity 1 48 0 1824 172 3 7 chr12 27105588 27105896 -117176593 + AluJb SINE Alu 5 311 -1 445 247 215 11 chr12 27105965 27106244 -117176245 + L1ME LINE L1 5304 5650 -520 274 192 96 15 chr12 27106256 27106354 -117176135 + L1ME LINE L1 5720 5812 -309 185 384 58 17 chr12 27106464 27106636 -117175853 + L2 LINE L2 3094 3272 0 387 303 16 0 chr12 27107960 27108082 -117174407 + MIR SINE MIR 50 173 -89 719 150 18 5 chr12 27108547 27108818 -117173671 + LTR54B LTR ERV1 13 378 -132 365 54 18 0 chr12 27109139 27109195 -117173294 + LTR54 LTR ERV1 453 509 -1 402 21 0 0 chr12 27109306 27109353 -117173136 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 858 185 13 0 chr12 27109355 27109506 -117172983 - FRAM SINE Alu -30 146 1 311 206 0 0 chr12 27109510 27109573 -117172916 - AluJ/monomer SINE Alu -249 50 2 219 250 167 0 chr12 27109574 27109646 -117172843 + MIR SINE MIR 57 140 -122 786 296 153 19 chr12 27109667 27110425 -117172064 - L2 LINE L2 -6 3307 2446 451 359 68 29 chr12 27110421 27110702 -117171787 - L3 LINE CR1 -171 1406 1115 * 2238 184 21 2 chr12 27110909 27111327 -117171162 - MSTB LTR MaLR 0 426 1 230 228 9 79 chr12 27112541 27112655 -117169834 - L1ME4a LINE L1 -55 6066 5961 1782 168 62 47 chr12 27113111 27113498 -117168991 + MSTD LTR MaLR 1 393 -3 337 294 184 0 chr12 27113674 27113892 -117168597 - L1M4 LINE L1 -1559 4587 4330 403 267 158 0 chr12 27114159 27114305 -117168184 + MIR SINE MIR 84 252 -10 186 43 0 0 chr12 27114484 27114507 -117167982 + (TC)n Simple_repeat Simple_repeat 1 23 0 26 50 0 0 chr12 27114805 27114845 -117167644 + AT_rich Low_complexity Low_complexity 1 40 0 438 292 123 6 chr12 27115700 27116049 -117166440 - L1ME4a LINE L1 -119 6002 5613 21 36 0 0 chr12 27117422 27117450 -117165039 + AT_rich Low_complexity Low_complexity 1 28 0 295 292 0 0 chr12 27117821 27117886 -117164603 + L2 LINE L2 3208 3272 0 21 0 0 0 chr12 27117984 27118005 -117164484 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 27118534 27118558 -117163931 + AT_rich Low_complexity Low_complexity 1 24 0 186 71 0 0 chr12 27118591 27118619 -117163870 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 442 291 85 36 chr12 27119147 27119394 -117163095 + LTR33 LTR ERVL 105 363 -158 23 0 0 0 chr12 27119804 27119827 -117162662 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 27120091 27120113 -117162376 + AT_rich Low_complexity Low_complexity 1 22 0 404 262 53 109 chr12 27120319 27120621 -117161868 - L2 LINE L2 -63 3250 2966 326 310 106 0 chr12 27120632 27120745 -117161744 + L2 LINE L2 3139 3263 -9 1000 173 5 33 chr12 27120894 27121108 -117161381 + MER3 DNA MER1_type 1 208 -1 553 288 137 17 chr12 27121373 27121740 -117160749 - L1ME4a LINE L1 -14 6107 5785 1894 141 7 0 chr12 27121740 27122017 -117160472 - AluJb SINE Alu -33 279 1 553 288 137 17 chr12 27122017 27122320 -117160169 - L1ME4a LINE L1 -336 5785 5347 1399 193 30 4 chr12 27122465 27122735 -117159754 - AluJo SINE Alu -20 292 16 340 298 18 18 chr12 27122996 27123110 -117159379 - L2 LINE L2 -10 3303 3190 371 254 119 30 chr12 27123150 27123284 -117159205 + MER58B DNA MER1_type 196 341 0 31 0 0 0 chr12 27123315 27123346 -117159143 + AT_rich Low_complexity Low_complexity 1 31 0 1490 271 123 74 chr12 27123466 27123589 -117158900 - L2 LINE L2 0 3313 3197 189 74 0 0 chr12 27123589 27123616 -117158873 + (TA)n Simple_repeat Simple_repeat 1 27 0 1490 271 123 74 chr12 27123616 27124706 -117157783 - L2 LINE L2 -116 3197 2006 2172 123 0 0 chr12 27125819 27126129 -117156360 + AluSg SINE Alu 1 310 0 186 118 0 0 chr12 27126132 27126166 -117156323 + (TA)n Simple_repeat Simple_repeat 2 35 0 309 51 0 0 chr12 27126166 27126205 -117156284 + (CA)n Simple_repeat Simple_repeat 2 40 0 244 314 171 33 chr12 27126231 27126441 -117156048 + L3 LINE CR1 1045 1283 -294 7209 122 2 17 chr12 27126708 27127110 -117155379 + L1MA3 LINE L1 4765 5171 -1134 2283 112 0 0 chr12 27127110 27127415 -117155074 + AluSx SINE Alu 1 305 -7 7209 122 2 17 chr12 27127415 27127860 -117154629 + L1MA3 LINE L1 5171 5621 -684 2166 100 7 27 chr12 27127860 27128160 -117154329 + AluSx SINE Alu 1 294 -18 7209 122 2 17 chr12 27128160 27128876 -117153613 + L1MA3 LINE L1 5621 6305 0 206 175 50 0 chr12 27128954 27128994 -117153495 + L3 LINE CR1 1533 1574 -3 745 253 30 43 chr12 27129233 27129466 -117153023 - MIR SINE MIR -25 237 8 768 237 68 6 chr12 27129476 27129653 -117152836 + MER5A DNA MER1_type 1 188 -1 198 118 0 0 chr12 27132885 27132919 -117149570 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 2338 109 0 0 chr12 27133337 27133640 -117148849 + AluSx SINE Alu 1 303 -9 214 312 21 0 chr12 27137409 27137502 -117144987 + CT-rich Low_complexity Low_complexity 1 95 0 289 311 6 44 chr12 27137570 27137750 -117144739 + CT-rich Low_complexity Low_complexity 6 178 0 243 300 27 9 chr12 27137841 27137951 -117144538 + T-rich Low_complexity Low_complexity 3 114 0 27 0 0 0 chr12 27138205 27138232 -117144257 + AT_rich Low_complexity Low_complexity 1 27 0 1772 210 22 27 chr12 27138244 27138649 -117143840 + L1MC4 LINE L1 6690 7092 -950 1854 249 89 8 chr12 27138650 27139265 -117143224 + L1MC4 LINE L1 7238 7902 -140 23 54 0 0 chr12 27139493 27139530 -117142959 + AT_rich Low_complexity Low_complexity 1 37 0 29 60 0 0 chr12 27139744 27139794 -117142695 + AT_rich Low_complexity Low_complexity 1 50 0 2177 113 20 0 chr12 27141786 27142087 -117140402 + AluSg SINE Alu 1 307 -3 28 0 0 0 chr12 27142087 27142115 -117140374 + AT_rich Low_complexity Low_complexity 1 28 0 1584 198 13 20 chr12 27143622 27143920 -117138569 + AluJo SINE Alu 1 296 -16 1147 48 0 28 chr12 27144771 27144916 -117137573 + AluY SINE Alu 1 141 -170 1512 75 0 20 chr12 27144916 27145117 -117137372 + AluY SINE Alu 109 305 -6 1007 187 17 31 chr12 27145364 27145658 -117136831 + SVA Other Other 432 721 -665 27 0 0 0 chr12 27145750 27145777 -117136712 + AT_rich Low_complexity Low_complexity 1 27 0 1860 156 9 22 chr12 27146297 27146612 -117135877 + AluJb SINE Alu 1 311 -1 202 191 48 0 chr12 27147476 27147518 -117134971 + GA-rich Low_complexity Low_complexity 5 48 0 26 30 0 0 chr12 27147525 27147558 -117134931 + AT_rich Low_complexity Low_complexity 1 33 0 305 131 33 0 chr12 27148493 27148554 -117133935 + Alu SINE Alu 238 300 0 370 325 82 19 chr12 27149595 27149801 -117132688 + L2 LINE L2 2543 2761 -553 261 57 0 0 chr12 27150527 27150562 -117131927 + (CA)n Simple_repeat Simple_repeat 1 35 0 234 274 116 0 chr12 27151060 27151155 -117131334 + L1ME3A LINE L1 44 149 -5970 539 320 96 58 chr12 27151358 27151476 -117131013 + L1ME3A LINE L1 561 673 -5446 3362 148 55 6 chr12 27151476 27152098 -117130391 + L1MC2 LINE L1 5680 6331 -13 539 320 96 58 chr12 27152098 27152532 -117129957 + L1ME3A LINE L1 673 1134 -4985 235 236 42 0 chr12 27152573 27152645 -117129844 + HAL1 LINE L1 1500 1574 -933 947 264 135 70 chr12 27152675 27153091 -117129398 + L1ME3A LINE L1 2411 2799 -3330 2381 68 0 0 chr12 27153091 27153409 -117129080 - AluY SINE Alu 0 318 1 947 264 135 70 chr12 27153409 27153692 -117128797 + L1ME3A LINE L1 2799 3062 -3067 2579 139 9 36 chr12 27153692 27154138 -117128351 + Tigger2a DNA MER2_type 1 434 0 947 264 135 70 chr12 27154138 27154617 -117127872 + L1ME3A LINE L1 3062 3509 -2620 1032 146 0 0 chr12 27154617 27154795 -117127694 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 947 264 135 70 chr12 27154795 27155247 -117127242 + L1ME3A LINE L1 3509 4150 -1979 352 278 91 28 chr12 27155393 27155569 -117126920 + L1ME3A LINE L1 5349 5535 -2443 422 265 118 84 chr12 27155608 27156023 -117126466 + L1ME3A LINE L1 5617 6045 -108 219 328 51 79 chr12 27156035 27156212 -117126277 + L3 LINE CR1 1405 1576 -1 331 270 181 42 chr12 27156292 27156629 -117125860 + MLT1L LTR MaLR 7 390 -225 482 327 73 0 chr12 27156818 27156983 -117125506 - MIR SINE MIR -70 192 16 244 196 22 0 chr12 27159582 27159628 -117122861 + MER81 DNA DNA 3 49 -65 2296 165 56 0 chr12 27160127 27160623 -117121866 + MER44D DNA MER2_type 15 605 0 6481 94 18 12 chr12 27161459 27162456 -117120033 + L1MA3 LINE L1 5303 6305 0 223 182 23 0 chr12 27162640 27162684 -117119805 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1966 143 0 10 chr12 27162929 27163237 -117119252 - AluJb SINE Alu -7 305 1 394 242 62 16 chr12 27164302 27164430 -117118059 + MIR SINE MIR 10 143 -119 2372 45 0 0 chr12 27164611 27164901 -117117588 + L1PA7 LINE L1 5859 6148 -6 196 288 96 56 chr12 27165674 27165799 -117116690 - L2 LINE L2 -2 3270 3141 500 215 33 0 chr12 27165926 27166047 -117116442 - MER94 DNA DNA -7 127 3 1719 178 7 3 chr12 27166280 27166572 -117115917 + AluJo SINE Alu 4 296 -16 334 185 11 11 chr12 27166643 27166735 -117115754 + CT-rich Low_complexity Low_complexity 1 92 0 244 253 55 33 chr12 27166840 27166931 -117115558 - L2 LINE L2 -44 3228 3136 206 220 40 0 chr12 27167283 27167333 -117115156 + GA-rich Low_complexity Low_complexity 4 55 0 183 204 0 0 chr12 27167350 27167399 -117115090 + GA-rich Low_complexity Low_complexity 2 50 0 24 53 0 0 chr12 27168368 27168406 -117114083 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 27168709 27168730 -117113759 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 27170106 27170128 -117112361 + AT_rich Low_complexity Low_complexity 1 22 0 2070 148 3 0 chr12 27171577 27171882 -117110607 + AluSx SINE Alu 2 307 -5 22 35 0 0 chr12 27172299 27172328 -117110161 + AT_rich Low_complexity Low_complexity 1 29 0 655 286 111 47 chr12 27173097 27173439 -117109050 + L2 LINE L2 2941 3304 -9 22 56 0 0 chr12 27173628 27173664 -117108825 + AT_rich Low_complexity Low_complexity 1 36 0 552 211 23 103 chr12 27175273 27175534 -117106955 - L1ME2 LINE L1 -1 6163 5924 1155 320 181 30 chr12 27175544 27176430 -117106059 + L3 LINE CR1 534 1552 -25 4508 35 2 0 chr12 27176443 27176984 -117105505 - L1PA4 LINE L1 0 6155 5614 494 116 0 42 chr12 27177265 27177360 -117105129 + L1PA10 LINE L1 6078 6168 0 235 331 69 29 chr12 27178460 27178635 -117103854 + MIR SINE MIR 47 228 -34 22 35 0 0 chr12 27179177 27179206 -117103283 + AT_rich Low_complexity Low_complexity 1 29 0 1429 235 67 0 chr12 27179234 27179579 -117102910 + MSTD LTR MaLR 1 368 -28 358 149 62 40 chr12 27179802 27179911 -117102578 + LTR16A LTR ERVL 1 109 -341 1747 176 8 41 chr12 27179912 27180275 -117102214 + MLT1A1 LTR MaLR 15 365 0 3134 185 32 112 chr12 27180275 27181242 -117101247 + MLT1A1-int LTR MaLR 1 887 -848 914 143 6 40 chr12 27181346 27181408 -117101081 + MLT1A1 LTR MaLR 197 260 -105 2725 94 3 0 chr12 27181408 27181771 -117100718 - THE1B LTR MaLR 0 364 1 914 143 6 40 chr12 27181771 27181883 -117100606 + MLT1A1 LTR MaLR 260 365 0 840 247 148 0 chr12 27181889 27182172 -117100317 + LTR16A LTR ERVL 126 450 0 222 191 0 0 chr12 27182916 27182963 -117099526 + T-rich Low_complexity Low_complexity 1 47 0 186 328 0 31 chr12 27183172 27183236 -117099253 - MIR3 SINE MIR -24 184 123 1261 212 62 58 chr12 27186043 27186165 -117096324 - L1MC4 LINE L1 0 8042 7922 348 43 0 0 chr12 27186165 27186211 -117096278 + (CA)n Simple_repeat Simple_repeat 1 46 0 1261 212 62 58 chr12 27186211 27186540 -117095949 - L1MC4 LINE L1 -120 7922 7589 247 222 200 0 chr12 27186566 27186656 -117095833 + L2 LINE L2 2667 2774 -540 617 37 0 12 chr12 27186735 27186816 -117095673 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 186 43 0 0 chr12 27186836 27186859 -117095630 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 409 294 9 0 chr12 27186921 27187030 -117095459 + L2 LINE L2 3204 3313 0 2129 151 16 16 chr12 27187206 27187591 -117094898 + L1MC1 LINE L1 5940 6324 -9 381 315 19 56 chr12 27188085 27188301 -117094188 - HAL1b LINE L1 -1094 254 47 661 323 74 15 chr12 27189486 27189889 -117092600 + LTR16A LTR ERVL 17 443 -7 445 324 91 43 chr12 27189922 27190132 -117092357 - MIR SINE MIR -30 232 13 2342 99 10 0 chr12 27190210 27190512 -117091977 - AluSc SINE Alu -4 305 1 229 35 0 0 chr12 27190609 27190638 -117091851 + Alu SINE Alu 176 204 -95 1629 211 87 24 chr12 27191603 27192019 -117090470 + MLT1F1 LTR MaLR 126 567 0 2541 65 0 0 chr12 27192305 27192615 -117089874 + AluY SINE Alu 1 310 -1 338 243 243 13 chr12 27192898 27193050 -117089439 + MIR SINE MIR 74 260 -2 27 49 0 0 chr12 27195180 27195221 -117087268 + AT_rich Low_complexity Low_complexity 1 41 0 441 242 88 46 chr12 27195620 27195821 -117086668 + MIR SINE MIR 3 206 -56 619 266 64 16 chr12 27196974 27197276 -117085213 - L2 LINE L2 -264 3049 2731 476 210 281 0 chr12 27199219 27199386 -117083103 + MIR SINE MIR 36 249 -13 1793 176 10 3 chr12 27199645 27199941 -117082548 - AluJo SINE Alu -12 300 3 23 54 0 0 chr12 27201660 27201697 -117080792 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr12 27201709 27201732 -117080757 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 27201758 27201779 -117080710 + AT_rich Low_complexity Low_complexity 1 21 0 1070 223 173 60 chr12 27202332 27202817 -117079672 + MLT1F LTR MaLR 3 542 0 337 55 55 0 chr12 27203081 27203136 -117079353 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 23 33 0 0 chr12 27204683 27204713 -117077776 + AT_rich Low_complexity Low_complexity 1 30 0 37 0 0 21 chr12 27205799 27205811 -117076678 + AT_rich Low_complexity Low_complexity 1 12 -35 1708 168 14 14 chr12 27205811 27206103 -117076386 + AluJb SINE Alu 1 292 -20 37 0 0 21 chr12 27206103 27206138 -117076351 + AT_rich Low_complexity Low_complexity 12 47 0 244 259 32 55 chr12 27206200 27206420 -117076069 + L1MEd LINE L1 1024 1238 -4881 42503 35 2 1 chr12 27206530 27212682 -117069807 + L1PA3 LINE L1 1 6155 0 241 301 65 8 chr12 27212726 27212849 -117069640 + HAL1 LINE L1 1494 1623 -884 2396 88 0 0 chr12 27212852 27213148 -117069341 + AluSx SINE Alu 5 300 -12 2285 120 0 0 chr12 27213167 27213466 -117069023 + AluSx SINE Alu 1 299 -13 309 357 93 0 chr12 27213468 27213608 -117068881 + HAL1 LINE L1 1617 1769 -738 23 54 0 0 chr12 27213726 27213763 -117068726 + AT_rich Low_complexity Low_complexity 1 37 0 1924 160 3 3 chr12 27214290 27214590 -117067899 + AluJb SINE Alu 1 300 -12 400 264 47 42 chr12 27214666 27214859 -117067630 + L1MEd LINE L1 2199 2392 -3737 219 265 45 114 chr12 27214933 27215065 -117067424 + L2 LINE L2 3146 3268 -4 209 218 23 46 chr12 27216645 27216732 -117065757 + T-rich Low_complexity Low_complexity 6 90 0 24 53 0 0 chr12 27217365 27217403 -117065086 + AT_rich Low_complexity Low_complexity 1 38 0 1001 264 37 48 chr12 27217604 27217983 -117064506 - L1ME3A LINE L1 -275 5895 5521 322 329 160 9 chr12 27218088 27218307 -117064182 + MIR SINE MIR 9 260 -2 22 35 0 0 chr12 27219659 27219688 -117062801 + AT_rich Low_complexity Low_complexity 1 29 0 1035 206 17 0 chr12 27219837 27220017 -117062472 + MER5A DNA MER1_type 2 184 -5 2795 201 52 7 chr12 27220108 27220680 -117061809 - MER82 DNA MER2_type 0 653 56 572 229 24 36 chr12 27221243 27221409 -117061080 - MER5B DNA MER1_type -14 164 1 1846 184 0 3 chr12 27222288 27222597 -117059892 + AluJb SINE Alu 3 310 -2 883 286 130 38 chr12 27222638 27223085 -117059404 + L2 LINE L2 2824 3311 -2 32 57 0 0 chr12 27223128 27223181 -117059308 + AT_rich Low_complexity Low_complexity 1 53 0 27 0 0 0 chr12 27223365 27223392 -117059097 + AT_rich Low_complexity Low_complexity 1 27 0 1684 176 3 17 chr12 27225016 27225312 -117057177 - AluJb SINE Alu -20 292 1 235 235 0 24 chr12 27225476 27225561 -117056928 + GA-rich Low_complexity Low_complexity 1 83 0 777 189 18 0 chr12 27225925 27226094 -117056395 + L1MA9 LINE L1 6106 6277 -35 1990 150 10 13 chr12 27226107 27226420 -117056069 + AluJb SINE Alu 1 312 0 241 167 0 30 chr12 27226421 27226487 -117056002 + GA-rich Low_complexity Low_complexity 4 67 0 776 201 43 5 chr12 27229192 27229376 -117053113 + MER20 DNA MER1_type 1 191 -28 1179 153 30 0 chr12 27230393 27230596 -117051893 + MER2 DNA MER2_type 2 210 -135 358 323 19 37 chr12 27230828 27230989 -117051500 - MIR SINE MIR -46 216 59 2679 153 91 6 chr12 27231052 27231582 -117050907 + MER90 LTR ERV1 1 575 0 1895 126 59 0 chr12 27234499 27234820 -117047669 + AluSx SINE Alu 1 337 0 727 227 34 17 chr12 27235269 27235549 -117046940 + L1ME2 LINE L1 5722 6010 -154 289 347 32 8 chr12 27236308 27236432 -117046057 + MIR3 SINE MIR 31 157 -51 21 0 0 0 chr12 27236887 27236908 -117045581 + AT_rich Low_complexity Low_complexity 1 21 0 268 327 88 54 chr12 27236938 27237235 -117045254 - L2 LINE L2 -2 3311 3005 445 286 83 26 chr12 27237358 27237550 -117044939 - MIR SINE MIR -34 228 26 2206 88 0 17 chr12 27239395 27239690 -117042799 - AluSx SINE Alu 0 312 23 238 359 58 29 chr12 27240288 27240391 -117042098 + L2 LINE L2 3150 3255 -17 721 218 23 17 chr12 27240413 27240587 -117041902 - MER20 DNA MER1_type 0 219 45 415 254 9 35 chr12 27240736 27240850 -117041639 - L2 LINE L2 0 3272 3162 391 337 101 0 chr12 27241641 27241819 -117040670 - MIR SINE MIR -10 252 57 22 0 0 0 chr12 27241933 27241955 -117040534 + AT_rich Low_complexity Low_complexity 1 22 0 584 141 39 47 chr12 27243124 27243252 -117039237 + MER3 DNA MER1_type 82 208 -1 212 281 82 89 chr12 27244083 27244218 -117038271 + L2 LINE L2 3138 3271 -1 1976 113 18 7 chr12 27244499 27244802 -117037687 - AluSq SINE Alu 0 306 1 6831 121 3 8 chr12 27244827 27245885 -117036604 + L1MA3 LINE L1 5254 6305 0 1618 159 62 0 chr12 27246929 27247205 -117035284 + AluSx SINE Alu 1 293 -19 303 270 131 36 chr12 27247231 27247368 -117035121 - MIR SINE MIR -22 240 91 484 276 196 18 chr12 27248568 27248843 -117033646 - L2 LINE L2 -23 3290 2967 330 291 145 0 chr12 27249074 27249191 -117033298 + MIR SINE MIR 56 189 -73 369 0 0 0 chr12 27249607 27249648 -117032841 + (CA)n Simple_repeat Simple_repeat 2 42 0 534 255 12 43 chr12 27249726 27249887 -117032602 + MER20B DNA MER1_type 1 156 -627 23 0 0 0 chr12 27250746 27250769 -117031720 + AT_rich Low_complexity Low_complexity 1 23 0 777 193 82 30 chr12 27251396 27251629 -117030860 + MER20B DNA MER1_type 539 783 0 258 291 8 30 chr12 27254532 27254666 -117027823 + L1MC4 LINE L1 5825 5955 -1853 207 0 0 0 chr12 27255045 27255068 -117027421 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1336 117 44 0 chr12 27255075 27255280 -117027209 - L1PA8A LINE L1 -27 6104 5891 303 280 32 11 chr12 27255491 27255584 -117026905 + L1MC4 LINE L1 6606 6700 -1342 2029 125 20 14 chr12 27255585 27255880 -117026609 - AluSx SINE Alu -15 297 1 1419 46 0 0 chr12 27256580 27256754 -117025735 - L1PA4 LINE L1 -5 6150 5977 600 161 0 0 chr12 27258760 27258853 -117023636 - FLAM_A SINE Alu -16 126 34 246 331 25 8 chr12 27262816 27262937 -117019552 - L3 LINE CR1 -4 1573 1451 1124 147 0 0 chr12 27265877 27266067 -117016422 - L1PA13 LINE L1 -853 5293 5104 * 6238 81 14 7 chr12 27266065 27266938 -117015551 + L1PA13 LINE L1 5274 6152 -11 189 107 0 0 chr12 27266994 27267022 -117015467 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 1571 177 21 25 chr12 27268487 27268770 -117013719 + AluJo SINE Alu 1 282 -30 25 0 0 0 chr12 27268781 27268806 -117013683 + AT_rich Low_complexity Low_complexity 1 25 0 271 283 0 40 chr12 27269508 27269607 -117012882 - MIR SINE MIR -51 211 117 293 262 131 35 chr12 27269705 27269850 -117012639 - L3 LINE CR1 -206 1371 1213 2097 109 61 0 chr12 27270022 27270316 -117012173 + AluSx SINE Alu 1 312 0 269 274 38 0 chr12 27270920 27271026 -117011463 + (TA)n Simple_repeat Simple_repeat 1 110 0 180 341 165 18 chr12 27271059 27271223 -117011266 - MIR SINE MIR -57 205 18 2287 112 0 3 chr12 27271969 27272274 -117010215 - AluSq SINE Alu -9 304 1 231 210 48 0 chr12 27272284 27272346 -117010143 - MER112 DNA MER1_type -48 212 148 264 214 53 0 chr12 27272347 27272478 -117010011 + GA-rich Low_complexity Low_complexity 3 140 0 332 209 52 134 chr12 27272482 27272654 -117009835 - MER112 DNA MER1_type -99 161 4 607 319 168 53 chr12 27273264 27273539 -117008950 + L3 LINE CR1 649 891 -686 569 191 23 15 chr12 27273539 27273670 -117008819 - MER94 DNA DNA 0 134 3 607 319 168 53 chr12 27273670 27274179 -117008310 + L3 LINE CR1 891 1523 -54 2178 114 13 0 chr12 27274219 27274525 -117007964 - AluSg SINE Alu 0 310 1 215 59 0 29 chr12 27274977 27275011 -117007478 + (CA)n Simple_repeat Simple_repeat 2 34 0 561 324 116 0 chr12 27275023 27275239 -117007250 - MIR SINE MIR -10 252 12 3355 209 71 20 chr12 27275892 27276779 -117005710 + L1ME1 LINE L1 5233 6161 -5 660 218 63 63 chr12 27277159 27277411 -117005078 + L1MC5 LINE L1 6787 7038 -923 216 67 0 0 chr12 27278644 27278674 -117003815 + (TG)n Simple_repeat Simple_repeat 1 30 0 1016 210 149 86 chr12 27279090 27279354 -117003135 + L1ME3 LINE L1 5618 5923 -239 2405 143 56 23 chr12 27279354 27279505 -117002984 + L1MB7 LINE L1 5669 5814 -370 2204 108 7 0 chr12 27279505 27279801 -117002688 + AluSx SINE Alu 1 298 -14 2405 143 56 23 chr12 27279801 27280133 -117002356 + L1MB7 LINE L1 5814 6168 -16 1016 210 149 86 chr12 27280133 27280310 -117002179 + L1ME3 LINE L1 5923 6087 -75 213 235 0 0 chr12 27280311 27280362 -117002127 + (TA)n Simple_repeat Simple_repeat 1 51 0 200 333 31 10 chr12 27280442 27280538 -117001951 + MIR SINE MIR 151 248 -14 180 267 44 0 chr12 27280530 27280575 -117001914 + L2 LINE L2 2406 2452 -862 * 2314 70 7 0 chr12 27280583 27280887 -117001602 + AluSp SINE Alu 1 306 0 1205 275 51 34 chr12 27280887 27281520 -117000969 + L2 LINE L2 2488 3148 -165 293 180 0 0 chr12 27281520 27281570 -117000919 + L2 LINE L2 3263 3312 -1 294 29 0 0 chr12 27283164 27283199 -116999290 + (CA)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr12 27283795 27283822 -116998667 + (TG)n Simple_repeat Simple_repeat 2 28 0 209 83 28 0 chr12 27284162 27284198 -116998291 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 311 232 14 0 chr12 27284389 27284458 -116998031 - MER116 DNA Mariner -7 73 4 2229 127 0 0 chr12 27285023 27285331 -116997158 - AluSx SINE Alu -4 308 1 535 125 0 0 chr12 27285399 27285479 -116997010 - MADE1 DNA Mariner 0 80 1 320 305 48 0 chr12 27287515 27287620 -116994869 + MER94 DNA DNA 17 126 -8 355 239 145 14 chr12 27287811 27287949 -116994540 - MIR SINE MIR -31 231 76 291 264 92 31 chr12 27288089 27288252 -116994237 + Charlie7 DNA MER1_type 2434 2606 -6 358 95 14 40 chr12 27288253 27288327 -116994162 + L1PA13 LINE L1 6090 6161 -2 2248 89 7 0 chr12 27288560 27288852 -116993637 + AluSg SINE Alu 1 294 -16 231 336 17 17 chr12 27289061 27289177 -116993312 - L3b LINE CR1 -166 1417 1302 4178 73 11 0 chr12 27289214 27289762 -116992727 + MER41A LTR ERV1 1 554 0 4179 126 33 35 chr12 27289848 27290565 -116991924 + MER41A-int LTR ERV1 1 623 -5323 * 12763 113 27 25 chr12 27290551 27293762 -116988727 + MER41A-int LTR ERV1 1080 5944 -2 3858 91 27 24 chr12 27293762 27294188 -116988301 + MER41A LTR ERV1 1 431 -123 2230 123 0 0 chr12 27294188 27294488 -116988001 - AluSx SINE Alu -12 300 1 3858 91 27 24 chr12 27294488 27294613 -116987876 + MER41A LTR ERV1 431 554 0 390 208 0 0 chr12 27294615 27294687 -116987802 + Tigger5 DNA MER2_type 2252 2323 0 416 339 0 0 chr12 27295978 27296090 -116986399 + L2 LINE L2 3161 3272 0 1109 186 88 47 chr12 27296905 27297223 -116985266 + MER2 DNA MER2_type 2 332 -13 386 297 47 47 chr12 27297281 27297473 -116985016 - MIR SINE MIR -27 235 44 813 196 22 16 chr12 27297525 27297709 -116984780 + MER105 DNA DNA 18 202 -2 257 196 0 0 chr12 27297813 27297859 -116984630 - Charlie4 DNA MER1_type -37 1924 1879 2530 234 40 39 chr12 27297887 27298488 -116984001 + L1M4 LINE L1 1464 2063 -5044 1735 179 3 14 chr12 27298488 27298779 -116983710 + AluJo SINE Alu 5 292 -20 2530 234 40 39 chr12 27298779 27299772 -116982717 + L1M4 LINE L1 2063 2929 -4178 245 278 0 0 chr12 27299890 27299962 -116982527 + L1M4 LINE L1 2823 2894 -4214 1019 167 56 35 chr12 27299965 27300253 -116982236 + L1MA9 LINE L1 6015 6308 -4 207 0 0 0 chr12 27300277 27300300 -116982189 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 281 226 0 0 chr12 27300347 27300400 -116982089 - Charlie4 DNA MER1_type -1869 92 40 2082 230 5 24 chr12 27300909 27301527 -116980962 + L1M4 LINE L1 5684 6289 -817 518 42 0 14 chr12 27301530 27301601 -116980888 + L1PA7 LINE L1 6082 6151 -3 302 200 0 5 chr12 27301675 27301764 -116980725 + L1M LINE L1 6262 6348 -945 276 294 91 16 chr12 27302398 27302585 -116979904 - L1ME LINE L1 -548 5573 5373 4076 188 32 4 chr12 27302602 27303765 -116978724 - L1MB7 LINE L1 -9 6175 4980 460 273 117 43 chr12 27304433 27304715 -116977774 - L1ME4a LINE L1 -2 6119 5817 661 73 0 91 chr12 27305091 27305201 -116977288 + L1PA7 LINE L1 6030 6129 -25 * 1565 35 0 0 chr12 27305197 27305396 -116977093 + L1HS LINE L1 5953 6151 -4 231 114 0 0 chr12 27305398 27305442 -116977047 + (A)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chr12 27305544 27305570 -116976919 + (A)n Simple_repeat Simple_repeat 1 26 0 439 81 0 0 chr12 27305599 27305661 -116976828 - Charlie1 DNA MER1_type -1 2760 2699 288 0 0 0 chr12 27305967 27305999 -116976490 + (CA)n Simple_repeat Simple_repeat 2 33 0 26 0 0 0 chr12 27306639 27306665 -116975824 + AT_rich Low_complexity Low_complexity 1 26 0 484 231 4 40 chr12 27307474 27307610 -116974879 + MIR SINE MIR 14 145 -63 230 220 144 42 chr12 27307611 27307729 -116974760 + MLT1J LTR MaLR 1 130 -381 958 259 88 27 chr12 27307745 27308120 -116974369 - MLT1C LTR MaLR -2 465 68 229 347 0 31 chr12 27308277 27308375 -116974114 + MLT1J1 LTR MaLR 189 283 -163 * 243 301 58 19 chr12 27308366 27308469 -116974020 + MLT1J LTR MaLR 378 484 -27 2339 87 3 0 chr12 27308487 27308785 -116973704 - AluY SINE Alu -12 299 1 432 205 27 18 chr12 27308859 27308971 -116973518 + MIR SINE MIR 147 259 -3 475 81 106 0 chr12 27309359 27309519 -116972970 + (TA)n Simple_repeat Simple_repeat 2 178 0 180 324 0 0 chr12 27309519 27309590 -116972899 + L2 LINE L2 3146 3216 -97 2635 98 0 0 chr12 27309709 27310076 -116972413 - L1PA8 LINE L1 0 6172 5806 261 0 0 0 chr12 27310954 27310983 -116971506 + (T)n Simple_repeat Simple_repeat 1 29 0 829 179 0 0 chr12 27311331 27311454 -116971035 + AluJb SINE Alu 3 125 -187 417 347 0 0 chr12 27311484 27311608 -116970881 - L2 LINE L2 0 3272 3149 499 279 94 16 chr12 27311869 27312123 -116970366 + LTR16C LTR ERVL 209 482 -9 227 291 50 101 chr12 27312220 27312478 -116970011 + L3 LINE CR1 689 933 -644 2947 106 66 0 chr12 27312519 27312903 -116969586 + MLT2A2 LTR ERVL 1 417 -36 198 103 0 0 chr12 27312903 27312932 -116969557 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 2947 106 66 0 chr12 27312932 27312972 -116969517 + MLT2A2 LTR ERVL 417 453 0 42444 71 7 2 chr12 27312972 27318603 -116963886 + HERVL-A2 LTR ERVL 1 5654 0 2335 58 130 30 chr12 27318603 27318964 -116963525 + MLT2A2 LTR ERVL 1 397 -56 393 22 0 0 chr12 27318965 27319011 -116963478 + (TA)n Simple_repeat Simple_repeat 1 46 0 372 22 0 0 chr12 27319010 27319055 -116963434 + (GA)n Simple_repeat Simple_repeat 2 46 0 * 234 84 0 229 chr12 27319089 27319172 -116963317 + MLT2A1 LTR ERVL 386 440 -4 352 348 23 63 chr12 27319211 27319513 -116962976 + L3 LINE CR1 1050 1339 -238 613 321 75 8 chr12 27319525 27319765 -116962724 + MIR SINE MIR 1 256 -6 1142 229 28 31 chr12 27320659 27321012 -116961477 + L1MD3 LINE L1 7479 7830 -165 514 260 74 1 chr12 27321009 27321221 -116961268 + L1MD3 LINE L1 7562 7974 0 * 957 9 0 0 chr12 27321228 27321338 -116961151 + (TCTCCC)n Simple_repeat Simple_repeat 5 114 0 4941 60 14 130 chr12 27321344 27322268 -116960221 + SVA Other Other 50 866 -520 6064 68 48 40 chr12 27322297 27323442 -116959047 + SVA Other Other 433 1386 0 217 306 31 20 chr12 27323642 27323740 -116958749 + MIR3 SINE MIR 102 200 -8 2413 77 10 0 chr12 27324895 27325194 -116957295 - AluSp SINE Alu -11 302 1 210 307 11 57 chr12 27325327 27325415 -116957074 - MIR SINE MIR -84 124 41 417 277 21 25 chr12 27325573 27325815 -116956674 - L1MEd LINE L1 -4908 1211 971 31 0 0 0 chr12 27326463 27326494 -116955995 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr12 27327559 27327591 -116954898 + (CA)n Simple_repeat Simple_repeat 2 33 0 477 291 158 0 chr12 27327774 27327932 -116954557 + MIR SINE MIR 46 228 -34 293 286 12 12 chr12 27327964 27328048 -116954441 + L2 LINE L2 3188 3271 -1 325 287 148 50 chr12 27329313 27329515 -116952974 - L3 LINE CR1 -1 1576 1355 447 290 35 41 chr12 27329518 27329687 -116952802 + L2 LINE L2 3146 3313 0 795 328 64 5 chr12 27329767 27330157 -116952332 - L3 LINE CR1 -346 1231 819 225 239 130 109 chr12 27330292 27330430 -116952059 + MER5B DNA MER1_type 1 141 -37 298 350 17 8 chr12 27330557 27330674 -116951815 + L2 LINE L2 3154 3271 -1 208 333 232 17 chr12 27331636 27331813 -116950676 - MIR SINE MIR 0 262 48 277 284 85 10 chr12 27332132 27332451 -116950038 + L1P LINE L1 4870 5205 -941 1984 138 3 3 chr12 27332676 27332972 -116949517 + AluSx SINE Alu 3 298 -14 218 393 86 26 chr12 27333001 27333118 -116949371 + MER91A DNA MER1_type 72 195 -1 203 315 19 0 chr12 27333118 27333163 -116949326 + MER91A DNA MER1_type 144 189 -1 709 263 70 76 chr12 27333208 27333720 -116948769 + L1ME3A LINE L1 5257 5765 -405 2169 104 0 24 chr12 27333720 27334018 -116948471 + AluSx SINE Alu 1 291 -21 709 263 70 76 chr12 27334018 27334204 -116948285 + L1ME3A LINE L1 5765 5951 -219 2394 104 0 0 chr12 27334655 27334963 -116947526 - AluSq SINE Alu -4 309 2 201 175 228 0 chr12 27335217 27335274 -116947215 + MIR SINE MIR 76 145 -117 21 57 0 0 chr12 27335944 27335979 -116946510 + AT_rich Low_complexity Low_complexity 1 35 0 715 185 19 52 chr12 27336968 27337179 -116945310 - L1ME LINE L1 -5809 261 58 685 266 134 75 chr12 27337236 27337454 -116945035 + L1MEd LINE L1 662 866 -5253 732 177 0 16 chr12 27337454 27337578 -116944911 + FLAM_A SINE Alu 1 122 -11 685 266 134 75 chr12 27337578 27337784 -116944705 + L1MEd LINE L1 866 1111 -5008 405 245 82 0 chr12 27338721 27338819 -116943670 + MIR SINE MIR 37 142 -120 1685 187 6 19 chr12 27338990 27339306 -116943183 + AluJo SINE Alu 1 312 0 752 176 0 0 chr12 27339341 27339460 -116943029 + FLAM_C SINE Alu 4 122 -21 474 146 0 0 chr12 27339519 27339629 -116942860 + (TA)n Simple_repeat Simple_repeat 2 111 0 344 252 154 24 chr12 27339632 27339969 -116942520 + L1MEd LINE L1 2317 2697 -3432 185 233 23 0 chr12 27339972 27340015 -116942474 - L3 LINE CR1 -377 1200 1157 207 310 40 30 chr12 27340016 27340116 -116942373 - L3 LINE CR1 -567 1010 910 338 336 42 0 chr12 27340237 27340356 -116942133 + L2 LINE L2 3145 3268 -4 520 101 0 0 chr12 27340914 27341003 -116941486 + L1MA4 LINE L1 6211 6299 -1 1877 149 3 0 chr12 27341692 27342007 -116940482 - AluJb SINE Alu 0 316 1 21 57 0 0 chr12 27342113 27342148 -116940341 + AT_rich Low_complexity Low_complexity 1 35 0 413 237 141 0 chr12 27342170 27342305 -116940184 + MIR SINE MIR 65 218 -44 285 213 16 0 chr12 27342508 27342569 -116939920 - L2 LINE L2 0 3313 3252 983 295 43 43 chr12 27342657 27343046 -116939443 - L2 LINE L2 -335 2978 2592 1056 168 6 0 chr12 27343639 27343812 -116938677 - AluJo SINE Alu -138 174 1 1648 123 0 0 chr12 27343960 27344179 -116938310 + AluSg/x SINE Alu 80 298 -12 490 273 83 37 chr12 27345079 27345295 -116937194 + MLT1K LTR MaLR 339 564 -24 591 205 79 0 chr12 27345413 27345540 -116936949 - L2 LINE L2 0 3313 3177 852 154 0 0 chr12 27347808 27347938 -116934551 - FLAM_C SINE Alu -3 130 1 216 0 0 0 chr12 27348009 27348033 -116934456 + (A)n Simple_repeat Simple_repeat 1 24 0 1321 120 0 5 chr12 27348305 27348497 -116933992 + AluY SINE Alu 5 195 -116 821 71 0 0 chr12 27348524 27348637 -116933852 + AluY SINE Alu 147 259 -52 1439 100 0 9 chr12 27348639 27348849 -116933640 + AluY SINE Alu 97 304 -7 2215 105 7 3 chr12 27348854 27349159 -116933330 + AluSx SINE Alu 1 306 -6 2391 58 0 7 chr12 27349268 27349561 -116932928 + AluY SINE Alu 1 291 -20 23 54 0 0 chr12 27350062 27350099 -116932390 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr12 27350207 27350244 -116932245 + AT_rich Low_complexity Low_complexity 1 37 0 261 253 10 30 chr12 27351231 27351330 -116931159 + MLT1K LTR MaLR 490 586 -2 31 0 0 0 chr12 27351404 27351435 -116931054 + AT_rich Low_complexity Low_complexity 1 31 0 246 252 26 113 chr12 27351456 27351607 -116930882 + L3b LINE CR1 1268 1405 -178 1901 145 28 3 chr12 27352035 27352318 -116930171 + AluSx SINE Alu 7 296 -16 2469 66 3 0 chr12 27352785 27353088 -116929401 + AluY SINE Alu 1 304 -7 463 304 84 14 chr12 27353254 27353468 -116929021 - MIR SINE MIR -27 235 7 437 309 33 132 chr12 27353476 27353904 -116928585 - L2 LINE L2 -1 3271 2895 2073 78 0 7 chr12 27353904 27354175 -116928314 + AluY SINE Alu 35 303 -8 437 309 33 132 chr12 27354175 27354231 -116928258 - L2 LINE L2 -377 2895 2835 309 229 14 14 chr12 27354554 27354624 -116927865 + L2 LINE L2 2689 2758 -556 538 258 76 0 chr12 27354896 27355028 -116927461 - MLT1J LTR MaLR -369 142 1 2086 116 0 23 chr12 27356757 27357059 -116925430 + AluSx SINE Alu 1 295 -17 386 211 108 69 chr12 27357329 27357533 -116924956 - L2 LINE L2 -8 3305 3094 2766 175 19 21 chr12 27357546 27358128 -116924361 + L1MB4 LINE L1 5594 6174 -6 187 259 37 0 chr12 27360001 27360055 -116922434 + L2 LINE L2 2995 3050 -222 366 352 31 8 chr12 27360220 27360348 -116922141 - L2 LINE L2 -13 3259 3129 237 245 0 0 chr12 27360496 27360549 -116921940 + L2 LINE L2 3261 3313 0 1955 132 33 3 chr12 27360972 27361306 -116921183 - MER47A DNA MER2_type -3 363 20 293 252 28 63 chr12 27361617 27361760 -116920729 - L1ME4a LINE L1 -4 6117 5980 2017 150 0 10 chr12 27361922 27362228 -116920261 + AluSx SINE Alu 1 303 -9 540 208 72 16 chr12 27363091 27363216 -116919273 + FLAM_C SINE Alu 1 132 -1 239 214 0 0 chr12 27363706 27363748 -116918741 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr12 27366188 27366213 -116916276 + AT_rich Low_complexity Low_complexity 1 25 0 1176 161 0 50 chr12 27366312 27366530 -116915959 - AluJb SINE Alu -21 291 85 2326 71 20 7 chr12 27366872 27367169 -116915320 - AluSc SINE Alu -8 301 1 274 322 141 28 chr12 27367518 27367695 -116914794 - MIR3 SINE MIR -2 206 10 344 154 51 26 chr12 27368064 27368142 -116914347 + Tigger7 DNA MER2_type 1 80 -470 2265 103 0 7 chr12 27368144 27368434 -116914055 - AluSx SINE Alu -24 288 1 2185 98 0 0 chr12 27368637 27368922 -116913567 + AluSx SINE Alu 1 285 -27 369 0 0 0 chr12 27368922 27368963 -116913526 + (CA)n Simple_repeat Simple_repeat 2 42 0 675 222 105 6 chr12 27369414 27369576 -116912913 + MER45A DNA AcHobo 1 178 0 1423 169 89 30 chr12 27369752 27370178 -116912311 + pTR5 LTR ERV1 743 1193 -1245 525 248 9 0 chr12 27370550 27370659 -116911830 - MER5A DNA MER1_type 0 189 80 1229 239 112 73 chr12 27370763 27371215 -116911274 - L1MC4 LINE L1 0 8042 7554 2333 109 3 0 chr12 27371215 27371526 -116910963 + AluSx SINE Alu 1 312 0 1229 239 112 73 chr12 27371526 27371742 -116910747 - L1MC4 LINE L1 -488 7554 7348 219 139 0 0 chr12 27372058 27372094 -116910395 + (CA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr12 27372371 27372394 -116910095 + AT_rich Low_complexity Low_complexity 1 23 0 1559 179 62 0 chr12 27372669 27372942 -116909547 + AluJb SINE Alu 1 290 -22 683 293 60 9 chr12 27373062 27373294 -116909195 + MIR SINE MIR 4 247 -15 877 218 6 6 chr12 27373303 27373477 -116909012 - FRAM SINE Alu -3 173 1 1953 141 7 0 chr12 27373697 27373996 -116908493 - AluSx SINE Alu 0 312 12 1560 196 10 10 chr12 27374809 27375100 -116907389 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr12 27375100 27375121 -116907368 + AT_rich Low_complexity Low_complexity 1 21 0 311 173 53 0 chr12 27375344 27375419 -116907070 + L1MB3 LINE L1 6089 6167 -16 651 132 9 0 chr12 27375880 27375986 -116906503 - AluSg/x SINE Alu 0 309 203 1397 80 16 21 chr12 27376091 27376278 -116906211 - AluSq SINE Alu -127 186 1 27 29 0 0 chr12 27377071 27377105 -116905384 + AT_rich Low_complexity Low_complexity 1 34 0 785 331 156 24 chr12 27377152 27377206 -116905283 - L3 LINE CR1 -578 999 954 2323 138 121 30 chr12 27377206 27377669 -116904820 + MLT1D LTR MaLR 1 505 0 785 331 156 24 chr12 27377669 27378046 -116904443 - L3 LINE CR1 -623 954 628 2230 120 0 3 chr12 27378046 27378347 -116904142 - AluSx SINE Alu -7 305 6 785 331 156 24 chr12 27378347 27378637 -116903852 - L3 LINE CR1 -949 628 181 1617 197 11 0 chr12 27378708 27378992 -116903497 + AluJb SINE Alu 1 287 -25 27 29 0 0 chr12 27379002 27379036 -116903453 + AT_rich Low_complexity Low_complexity 1 34 0 535 267 47 7 chr12 27379371 27379521 -116902968 - MIR SINE MIR -64 198 43 255 259 9 28 chr12 27379605 27379713 -116902776 - L1MC5 LINE L1 -48 7913 7808 2408 225 73 42 chr12 27379737 27380001 -116902488 - L1ME1 LINE L1 -23 6143 5888 2299 111 3 0 chr12 27380001 27380308 -116902181 - AluSx SINE Alu -4 308 1 2408 225 73 42 chr12 27380308 27380859 -116901630 - L1ME1 LINE L1 -278 5888 5296 2025 112 0 0 chr12 27380859 27381135 -116901354 - AluSx SINE Alu -36 276 1 2408 225 73 42 chr12 27381135 27381332 -116901157 - L1ME1 LINE L1 -870 5296 5106 253 318 15 50 chr12 27381475 27381490 -116900999 - L1MDa LINE L1 -6329 211 197 1981 136 0 48 chr12 27381490 27381800 -116900689 + AluSx SINE Alu 3 297 -15 253 318 15 50 chr12 27381800 27381982 -116900507 - L1MDa LINE L1 -6343 197 21 2342 105 0 6 chr12 27382641 27382954 -116899535 - AluSx SINE Alu -1 311 1 728 239 53 25 chr12 27382961 27383204 -116899285 - MER112 DNA MER1_type -8 252 3 556 250 38 87 chr12 27383637 27383761 -116898728 + MIR SINE MIR 12 141 -121 409 91 13 13 chr12 27383761 27383838 -116898651 + (TA)n Simple_repeat Simple_repeat 1 77 0 2103 129 7 20 chr12 27383838 27384140 -116898349 - AluJo SINE Alu -14 298 1 556 250 38 87 chr12 27384140 27384278 -116898211 + MIR SINE MIR 139 262 0 34 65 0 0 chr12 27384514 27384576 -116897913 + AT_rich Low_complexity Low_complexity 1 62 0 1085 168 0 0 chr12 27385105 27385272 -116897217 - FRAM SINE Alu -10 166 1 1674 184 0 32 chr12 27385329 27385638 -116896851 + AluJo SINE Alu 1 299 -13 27 92 0 0 chr12 27385663 27385739 -116896750 + AT_rich Low_complexity Low_complexity 1 76 0 5061 125 24 50 chr12 27386276 27386346 -116896143 - MER49 LTR ERV1 0 923 853 7294 41 3 1 chr12 27386346 27387232 -116895257 + L1PA7 LINE L1 5254 6141 -13 207 0 0 0 chr12 27387236 27387259 -116895230 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 5061 125 24 50 chr12 27387259 27388037 -116894452 - MER49 LTR ERV1 -73 850 93 1669 183 11 0 chr12 27388037 27388342 -116894147 - AluJb SINE Alu 0 308 1 5061 125 24 50 chr12 27388342 27388433 -116894056 - MER49 LTR ERV1 -830 93 1 394 273 83 0 chr12 27388637 27388758 -116893731 + MIR SINE MIR 2 132 -130 640 266 87 28 chr12 27388787 27389212 -116893277 + LTR33 LTR ERVL 54 503 -18 242 250 29 44 chr12 27389229 27389297 -116893192 + MIR SINE MIR 167 233 -29 677 300 25 17 chr12 27389933 27390063 -116892426 + MIR SINE MIR 12 146 -116 1936 123 49 0 chr12 27390063 27390348 -116892141 + AluJo SINE Alu 1 299 -13 677 300 25 17 chr12 27390348 27390454 -116892035 + MIR SINE MIR 146 250 -12 282 116 0 0 chr12 27390601 27390644 -116891845 + (TA)n Simple_repeat Simple_repeat 1 43 0 810 214 48 19 chr12 27390737 27390943 -116891546 + MIR SINE MIR 1 212 -50 772 217 17 0 chr12 27391074 27391249 -116891240 + L1ME2 LINE L1 5986 6163 -1 329 284 69 9 chr12 27391759 27391875 -116890614 - MIR SINE MIR -73 189 67 272 295 43 0 chr12 27393777 27393916 -116888573 - MER103 DNA DNA -5 161 17 1967 133 27 0 chr12 27394325 27394619 -116887870 - AluSx SINE Alu -10 302 1 819 208 6 11 chr12 27394673 27394856 -116887633 + Tigger1 DNA MER2_type 1 182 -2236 621 173 27 0 chr12 27394868 27394978 -116887511 - FLAM_C SINE Alu -21 122 10 7698 111 1 37 chr12 27394986 27395760 -116886729 + Tigger1 DNA MER2_type 177 889 -1529 2308 100 0 0 chr12 27395760 27396060 -116886429 + AluSx SINE Alu 1 300 -12 7698 111 1 37 chr12 27396060 27396733 -116885756 + Tigger1 DNA MER2_type 889 1584 -834 848 150 8 0 chr12 27396734 27396861 -116885628 - AluSg/x SINE Alu -11 301 174 399 301 59 59 chr12 27398436 27398622 -116883867 + L2 LINE L2 3068 3253 -19 222 105 0 0 chr12 27398623 27398661 -116883828 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2029 116 7 7 chr12 27398661 27398946 -116883543 - AluSp SINE Alu -28 285 1 3114 79 5 12 chr12 27399204 27399611 -116882878 - L1PA8 LINE L1 -1 6171 5768 264 250 125 25 chr12 27400390 27400510 -116881979 + L1MEd LINE L1 1 132 -5987 1082 146 0 6 chr12 27400719 27400912 -116881577 + AluSg/x SINE Alu 121 312 0 385 169 0 0 chr12 27400912 27400977 -116881512 + MLT1A1 LTR MaLR 301 365 0 2448 68 0 3 chr12 27401300 27401596 -116880893 + AluY SINE Alu 1 295 -16 533 233 43 0 chr12 27401868 27401984 -116880505 + L2 LINE L2 3192 3312 -1 396 0 0 0 chr12 27402348 27402392 -116880097 + (ATG)n Simple_repeat Simple_repeat 2 45 0 552 148 9 35 chr12 27402461 27402576 -116879913 - LTR41 LTR ERVL -2 771 660 1321 148 39 0 chr12 27402579 27402782 -116879707 + AluJb SINE Alu 1 211 -101 709 180 23 8 chr12 27402791 27403100 -116879389 + AluJb SINE Alu 166 476 0 2571 52 0 0 chr12 27403154 27403459 -116879030 + AluY SINE Alu 1 305 -6 337 292 183 0 chr12 27403861 27403998 -116878491 - LTR41 LTR ERVL -611 162 1 2415 97 0 0 chr12 27404500 27404800 -116877689 + AluSx SINE Alu 1 300 -12 2372 62 0 20 chr12 27406635 27406940 -116875549 + AluY SINE Alu 1 299 -12 1033 161 6 0 chr12 27407190 27407352 -116875137 - FRAM SINE Alu -13 163 1 340 82 311 0 chr12 27407369 27407430 -116875059 + MADE1 DNA Mariner 1 80 0 1792 172 33 7 chr12 27407491 27407794 -116874695 - AluJb SINE Alu -1 311 1 319 163 0 17 chr12 27408032 27408185 -116874304 + AluJb SINE Alu 87 291 -11 300 282 0 0 chr12 27408238 27408309 -116874180 - L2 LINE L2 -1 3312 3242 23 0 0 0 chr12 27408397 27408420 -116874069 + AT_rich Low_complexity Low_complexity 1 23 0 1209 163 24 10 chr12 27408508 27408717 -116873772 - AluJb SINE Alu -15 297 86 1158 122 14 75 chr12 27409301 27409515 -116872974 + AluJo SINE Alu 86 286 -26 249 33 0 0 chr12 27409515 27409545 -116872944 + (TA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr12 27411015 27411037 -116871452 + AT_rich Low_complexity Low_complexity 1 22 0 2081 134 0 0 chr12 27411566 27411869 -116870620 - AluSx SINE Alu 0 303 1 21 71 0 0 chr12 27411883 27411925 -116870564 + AT_rich Low_complexity Low_complexity 1 42 0 617 195 71 47 chr12 27412559 27412728 -116869761 - MER104 DNA MER2_type -4 176 4 839 174 12 25 chr12 27413849 27414010 -116868479 + MER5A DNA MER1_type 5 163 -26 2662 209 276 91 chr12 27414087 27414485 -116868004 + L2 LINE L2 525 848 -2466 1567 203 3 10 chr12 27414485 27414780 -116867709 - AluJo SINE Alu -19 293 1 2662 209 276 91 chr12 27414780 27415906 -116866583 + L2 LINE L2 848 2332 -982 823 318 55 40 chr12 27415937 27416390 -116866099 - L2 LINE L2 -616 2698 2239 539 260 0 8 chr12 27416390 27416517 -116865972 - L2 LINE L2 -1336 1978 1853 234 266 147 63 chr12 27416518 27416770 -116865719 - L2 LINE L2 -1747 1567 1295 421 315 119 8 chr12 27417429 27417664 -116864825 - L3 LINE CR1 -126 1451 1191 387 95 16 0 chr12 27417839 27417902 -116864587 + Alu SINE Alu 239 302 0 2479 45 3 36 chr12 27418558 27418867 -116863622 + AluY SINE Alu 1 299 -12 189 74 0 0 chr12 27419077 27419104 -116863385 + (GA)n Simple_repeat Simple_repeat 2 28 0 186 375 14 0 chr12 27421088 27421160 -116861329 + L2 LINE L2 1852 1924 -1390 1563 238 45 11 chr12 27422423 27422802 -116859687 + MSTD LTR MaLR 1 392 -4 2541 75 0 0 chr12 27422944 27423252 -116859237 + AluY SINE Alu 1 308 -3 23794 94 9 3 chr12 27423354 27427154 -116855335 + L1P3 LINE L1 1956 5774 -380 397 278 28 35 chr12 27427500 27427644 -116854845 + MIR3 SINE MIR 14 156 -52 862 243 35 24 chr12 27427860 27428115 -116854374 - MIR SINE MIR -1 261 4 437 123 48 27 chr12 27428714 27428976 -116853513 + (TA)n Simple_repeat Simple_repeat 1 267 0 307 281 98 117 chr12 27430225 27430705 -116851784 - L1M2 LINE L1 -5925 924 454 2271 99 0 0 chr12 27431511 27431805 -116850684 + AluSx SINE Alu 1 294 -18 2373 83 0 7 chr12 27432279 27432580 -116849909 + AluSq SINE Alu 1 299 -14 329 216 62 10 chr12 27433552 27433649 -116848840 - MER115 DNA AcHobo -8 685 584 2006 132 0 3 chr12 27434432 27434736 -116847753 - AluSq SINE Alu -10 303 1 232 243 117 18 chr12 27434772 27434883 -116847606 - L1ME4a LINE L1 -2 6119 5998 272 284 147 0 chr12 27436873 27436982 -116845507 - MIR SINE MIR -106 156 32 299 321 79 14 chr12 27437033 27437173 -116845316 + MIR SINE MIR 52 200 -62 385 250 17 57 chr12 27437219 27437395 -116845094 + CT-rich Low_complexity Low_complexity 4 172 0 2135 101 17 14 chr12 27437401 27437697 -116844792 - AluSx SINE Alu -7 305 9 2273 103 0 7 chr12 27438022 27438324 -116844165 + AluSx SINE Alu 1 300 -12 96 53 0 0 chr12 27438452 27438604 -116843885 + AT_rich Low_complexity Low_complexity 1 152 0 240 277 113 92 chr12 27438623 27438764 -116843725 + L2 LINE L2 3129 3272 0 2380 93 0 3 chr12 27439846 27440157 -116842332 + AluSg SINE Alu 1 310 0 518 62 37 25 chr12 27441698 27441779 -116840710 + L1MA5 LINE L1 6217 6298 -2 2060 135 0 0 chr12 27441786 27442082 -116840407 + AluSg SINE Alu 1 296 -14 611 140 59 1 chr12 27442089 27442211 -116840278 + L1MC3 LINE L1 7677 7785 0 616 332 142 38 chr12 27442718 27442834 -116839655 - L2 LINE L2 -181 3091 2988 1621 184 23 23 chr12 27442834 27443143 -116839346 + AluJo SINE Alu 4 312 0 616 332 142 38 chr12 27443143 27443792 -116838697 - L2 LINE L2 -284 2988 2265 1164 61 7 14 chr12 27443792 27443939 -116838550 + AluY SINE Alu 1 146 -165 1434 78 5 11 chr12 27444045 27444236 -116838253 + L1PA7 LINE L1 5964 6153 -1 2502 73 0 0 chr12 27444548 27444850 -116837639 + AluY SINE Alu 1 302 -9 414 206 48 87 chr12 27445898 27446024 -116836465 - MIR3 SINE MIR -3 205 85 1553 237 133 32 chr12 27447351 27447854 -116834635 - MER68 LTR ERV1 -8 554 1 2372 228 60 1 chr12 27447854 27448624 -116833865 + L1ME1 LINE L1 4651 5464 -743 273 279 317 0 chr12 27448812 27448916 -116833573 + L2 LINE L2 3136 3272 0 2231 102 3 0 chr12 27450711 27451018 -116831471 + AluSq SINE Alu 1 308 0 316 291 0 17 chr12 27451030 27451147 -116831342 + L1ME4a LINE L1 5986 6100 -21 23 33 0 0 chr12 27451156 27451186 -116831303 + AT_rich Low_complexity Low_complexity 1 30 0 182 333 0 0 chr12 27451677 27451725 -116830764 + L2 LINE L2 3219 3266 -6 21 71 0 0 chr12 27452823 27452865 -116829624 + AT_rich Low_complexity Low_complexity 1 42 0 245 204 75 32 chr12 27453225 27453318 -116829171 + L1ME1 LINE L1 5505 5601 -743 502 194 56 160 chr12 27453336 27453612 -116828877 + L1ME1 LINE L1 5880 6125 -41 328 223 115 0 chr12 27453647 27453777 -116828712 - L1ME4a LINE L1 -4 6117 5973 300 266 130 39 chr12 27454222 27454349 -116828140 - L1ME4a LINE L1 -171 5950 5795 2171 118 3 0 chr12 27454349 27454645 -116827844 + AluSq SINE Alu 1 297 -16 300 266 130 39 chr12 27454645 27454724 -116827765 - L1ME4a LINE L1 -326 5795 5725 602 98 33 0 chr12 27454743 27454835 -116827654 - AluSg/x SINE Alu -8 304 210 1845 77 3 23 chr12 27455704 27456000 -116826489 + THE1C LTR MaLR 1 375 0 2188 115 3 0 chr12 27456110 27456405 -116826084 - AluSx SINE Alu -16 296 1 22 70 0 0 chr12 27456822 27456865 -116825624 + AT_rich Low_complexity Low_complexity 1 43 0 444 207 96 64 chr12 27457226 27457414 -116825075 + L1MC5 LINE L1 7732 7925 -36 2048 140 0 7 chr12 27457426 27457726 -116824763 + AluSx SINE Alu 2 299 -13 1715 179 0 10 chr12 27458004 27458300 -116824189 - AluSx SINE Alu -16 296 4 2198 162 119 38 chr12 27458699 27459205 -116823284 + MER44D DNA MER2_type 159 705 0 24 0 0 0 chr12 27459391 27459415 -116823074 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr12 27459647 27459701 -116822788 + AT_rich Low_complexity Low_complexity 1 54 0 217 276 0 17 chr12 27460200 27460258 -116822231 - L2 LINE L2 -1 3312 3256 1103 82 0 0 chr12 27460892 27461026 -116821463 - AluSp/q SINE Alu -17 296 163 262 306 174 0 chr12 27461027 27461146 -116821343 - MIR SINE MIR -114 148 9 361 224 0 0 chr12 27461146 27461213 -116821276 + MER5A DNA MER1_type 1 67 -122 860 148 7 7 chr12 27461216 27461351 -116821138 - AluJo SINE Alu -177 135 1 22 0 0 0 chr12 27461363 27461385 -116821104 + AT_rich Low_complexity Low_complexity 1 22 0 237 230 13 118 chr12 27461410 27461562 -116820927 + LTR2 LTR ERV1 4 139 -310 848 139 0 36 chr12 27463231 27463368 -116819121 - FLAM_C SINE Alu -1 132 1 360 287 74 9 chr12 27463732 27463840 -116818649 - L2 LINE L2 0 3313 3199 21 36 0 0 chr12 27464393 27464421 -116818068 + AT_rich Low_complexity Low_complexity 1 28 0 518 184 104 75 chr12 27465356 27465557 -116816932 - L1MC4 LINE L1 0 8042 7836 398 241 0 13 chr12 27465693 27465772 -116816717 + MER21B LTR ERV1 13 90 -773 2090 245 113 37 chr12 27465794 27466517 -116815972 + MER21B LTR ERV1 19 796 -67 40 0 0 0 chr12 27466663 27466703 -116815786 + AT_rich Low_complexity Low_complexity 1 40 0 1961 150 0 0 chr12 27466703 27466989 -116815500 - AluJb SINE Alu -22 290 5 1983 213 50 6 chr12 27468029 27468509 -116813980 + L1M4 LINE L1 3668 4168 -1978 1144 196 87 57 chr12 27468517 27468782 -116813707 + AluJo SINE Alu 2 274 -38 570 160 23 8 chr12 27468782 27468913 -116813576 + GA-rich Low_complexity Low_complexity 3 135 0 2462 198 62 2 chr12 27468916 27469527 -116812962 + L1M4 LINE L1 4152 4799 -1347 217 200 33 0 chr12 27470198 27470238 -116812251 + A-rich Low_complexity Low_complexity 4 48 -17 2252 118 0 3 chr12 27470238 27470551 -116811938 + AluSx SINE Alu 1 312 0 217 200 33 0 chr12 27470551 27470570 -116811919 + A-rich Low_complexity Low_complexity 48 65 0 2395 90 0 0 chr12 27470888 27471189 -116811300 + AluSq SINE Alu 1 301 -12 370 321 46 68 chr12 27471204 27471643 -116810846 + HAL1 LINE L1 91 519 -1988 709 163 0 8 chr12 27471661 27471784 -116810705 + MER3 DNA MER1_type 6 127 -82 657 273 205 30 chr12 27471795 27473124 -116809365 + HAL1 LINE L1 592 2210 -297 1427 122 32 5 chr12 27473142 27473363 -116809126 + AluSg/x SINE Alu 68 294 -18 303 198 173 25 chr12 27473381 27473543 -116808946 + HAL1 LINE L1 2298 2483 -24 193 283 43 87 chr12 27473812 27473950 -116808539 - L2 LINE L2 0 3272 3141 240 323 214 12 chr12 27473983 27474310 -116808179 - L2 LINE L2 -138 3175 2762 468 272 94 31 chr12 27474560 27474765 -116807724 - MIR SINE MIR -30 232 19 424 252 54 9 chr12 27475155 27475266 -116807223 + MIR SINE MIR 37 152 -110 461 282 0 0 chr12 27475371 27475488 -116807001 + MIR SINE MIR 146 262 0 240 246 0 18 chr12 27477078 27477135 -116805354 + (CG)n Simple_repeat Simple_repeat 2 57 0 180 368 80 8 chr12 27478200 27478325 -116804164 + L2 LINE L2 2359 2492 -822 208 311 183 63 chr12 27478570 27478904 -116803585 + L2 LINE L2 2872 3245 -27 192 40 0 0 chr12 27481123 27481148 -116801341 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2129 86 0 0 chr12 27481148 27481415 -116801074 - AluSg SINE Alu -32 278 12 8222 227 74 36 chr12 27481749 27482637 -116799852 - L1MC/D LINE L1 -743 5403 4550 2220 112 0 10 chr12 27482637 27482941 -116799548 + AluSx SINE Alu 1 301 -11 8222 227 74 36 chr12 27482941 27483089 -116799400 - L1MC/D LINE L1 -1596 4550 4409 201 44 22 44 chr12 27483089 27483134 -116799355 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 8222 227 74 36 chr12 27483134 27484673 -116797816 - L1MC/D LINE L1 -1737 4409 2930 2334 90 0 0 chr12 27484673 27484974 -116797515 + AluSq SINE Alu 1 301 -12 8222 227 74 36 chr12 27484974 27485410 -116797079 - L1MC/D LINE L1 -3216 2930 2348 1599 179 10 10 chr12 27485410 27485706 -116796783 - AluJb SINE Alu -16 296 1 8222 227 74 36 chr12 27485706 27485740 -116796749 - L1MC/D LINE L1 -3798 2348 2317 2396 227 114 36 chr12 27485755 27486516 -116795973 - L1ME1 LINE L1 -5 6555 5855 1429 169 123 0 chr12 27486516 27486776 -116795713 - AluJb SINE Alu -10 292 1 2396 227 114 36 chr12 27486776 27487749 -116794740 - L1ME1 LINE L1 -705 5855 1637 521 200 70 17 chr12 27487988 27488103 -116794386 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr12 27488112 27488136 -116794353 + AT_rich Low_complexity Low_complexity 1 24 0 2075 125 14 0 chr12 27488230 27488526 -116793963 - AluSq SINE Alu -13 300 1 2371 88 0 3 chr12 27488678 27488974 -116793515 - AluSq SINE Alu -18 295 1 2535 58 0 16 chr12 27489312 27489625 -116792864 - AluY SINE Alu 0 311 4 321 330 69 30 chr12 27489838 27490071 -116792418 - MER89-int LTR ERV1 -3159 3642 3401 1180 113 17 6 chr12 27490251 27490428 -116792061 - AluSg/x SINE Alu -11 299 121 2003 120 0 0 chr12 27490455 27490721 -116791768 - AluSx SINE Alu -46 266 1 180 0 0 0 chr12 27491189 27491209 -116791280 + (T)n Simple_repeat Simple_repeat 1 20 0 2370 65 0 19 chr12 27492082 27492392 -116790097 + AluY SINE Alu 1 304 -7 4460 147 48 20 chr12 27494426 27495021 -116787468 - L1MB7 LINE L1 -14 6170 5535 1287 111 93 28 chr12 27495021 27495237 -116787252 - MER30 DNA MER1_type 0 230 1 4460 147 48 20 chr12 27495237 27495541 -116786948 - L1MB7 LINE L1 -649 5535 5241 262 88 0 35 chr12 27495545 27495602 -116786887 + (TA)n Simple_repeat Simple_repeat 2 56 0 436 271 128 31 chr12 27495862 27496120 -116786369 + L2 LINE L2 2464 2746 -568 1798 182 0 7 chr12 27497179 27497475 -116785014 + AluJo SINE Alu 1 294 -18 27 0 0 0 chr12 27498267 27498294 -116784195 + AT_rich Low_complexity Low_complexity 1 27 0 2034 115 35 3 chr12 27500565 27500851 -116781638 + AluSq SINE Alu 1 295 -18 738 158 0 55 chr12 27501104 27501269 -116781220 + MER3 DNA MER1_type 6 161 -48 343 346 47 0 chr12 27501651 27501758 -116780731 + L2 LINE L2 3136 3247 -25 21 0 0 0 chr12 27504181 27504202 -116778287 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 27504926 27504955 -116777534 + AT_rich Low_complexity Low_complexity 1 29 0 891 220 53 36 chr12 27505918 27506341 -116776148 + MLT1C LTR MaLR 1 467 0 2154 97 4 4 chr12 27506487 27506765 -116775724 + AluSq SINE Alu 22 299 -14 1834 195 138 8 chr12 27506909 27507402 -116775087 + L2 LINE L2 2043 2599 -715 242 174 0 0 chr12 27507420 27507466 -116775023 + L1ME LINE L1 5727 5772 -349 1603 236 65 11 chr12 27508014 27508472 -116774017 - LTR34 LTR ERV1 -4 695 213 483 348 135 12 chr12 27508546 27508805 -116773684 + L2 LINE L2 2979 3269 -3 2009 118 21 11 chr12 27508844 27509131 -116773358 - AluSx SINE Alu -17 295 6 1649 150 64 47 chr12 27509348 27509709 -116772780 - MLT1B LTR MaLR -19 371 5 280 339 109 12 chr12 27510104 27510269 -116772220 + MIR3 SINE MIR 14 194 -14 1760 106 24 109 chr12 27511521 27511850 -116770639 - AluYb8 SINE Alu -17 301 1 331 116 72 14 chr12 27512101 27512170 -116770319 + L1MB2 LINE L1 6097 6169 -2 1665 168 30 14 chr12 27512276 27512573 -116769916 - AluJb SINE Alu -10 302 1 311 250 201 35 chr12 27515706 27515850 -116766639 + MIR3 SINE MIR 40 207 -1 330 240 173 34 chr12 27516304 27516512 -116765977 + Charlie7 DNA MER1_type 319 555 -2057 2193 127 0 0 chr12 27516572 27516864 -116765625 + AluSx SINE Alu 1 292 -20 330 26 0 0 chr12 27516867 27516906 -116765583 + (TG)n Simple_repeat Simple_repeat 2 40 0 1752 163 24 0 chr12 27516921 27517209 -116765280 + AluJo SINE Alu 1 295 -17 237 189 78 44 chr12 27517270 27517360 -116765129 + Charlie7 DNA MER1_type 2520 2612 0 259 254 212 85 chr12 27517398 27517563 -116764926 - MIR SINE MIR -55 207 22 1908 139 10 23 chr12 27517679 27517981 -116764508 - AluJo SINE Alu -14 298 1 223 314 14 0 chr12 27517988 27518058 -116764431 - MER5A DNA MER1_type -80 109 39 1066 159 0 28 chr12 27520451 27520627 -116761862 + FAM SINE Alu 5 175 0 1986 152 0 7 chr12 27521134 27521436 -116761053 - AluJb SINE Alu -12 300 1 824 158 0 8 chr12 27521450 27521577 -116760912 - FLAM_C SINE Alu -17 126 1 283 250 0 73 chr12 27522108 27522232 -116760257 + L1MC5 LINE L1 7175 7289 -672 800 188 73 122 chr12 27522352 27522761 -116759728 + L1MC5 LINE L1 7484 7872 -89 22 0 0 0 chr12 27522831 27522853 -116759636 + AT_rich Low_complexity Low_complexity 1 22 0 2189 105 6 13 chr12 27523248 27523562 -116758927 + AluSx SINE Alu 1 312 0 1131 74 0 0 chr12 27524315 27524450 -116758039 + AluSq/x SINE Alu 1 135 -177 1697 145 26 4 chr12 27524450 27524719 -116757770 + AluSx SINE Alu 1 275 -37 429 252 54 9 chr12 27524924 27525035 -116757454 + MIR SINE MIR 37 152 -110 455 282 0 0 chr12 27525140 27525257 -116757232 + MIR SINE MIR 146 262 0 240 246 0 18 chr12 27526836 27526893 -116755596 + (CG)n Simple_repeat Simple_repeat 2 57 0 185 368 80 8 chr12 27527958 27528083 -116754406 + L2 LINE L2 2359 2492 -822 220 311 183 63 chr12 27528328 27528662 -116753827 + L2 LINE L2 2872 3245 -27 192 40 0 0 chr12 27530881 27530906 -116751583 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2118 86 0 0 chr12 27530906 27531173 -116751316 - AluSg SINE Alu -32 278 12 7451 225 74 37 chr12 27531507 27532396 -116750093 - L1MC/D LINE L1 -743 5403 4549 2267 109 0 10 chr12 27532396 27532700 -116749789 + AluSx SINE Alu 1 301 -11 7451 225 74 37 chr12 27532700 27532848 -116749641 - L1MC/D LINE L1 -1597 4549 4408 201 44 22 44 chr12 27532848 27532893 -116749596 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 7451 225 74 37 chr12 27532893 27534432 -116748057 - L1MC/D LINE L1 -1738 4408 2928 2344 90 0 0 chr12 27534432 27534733 -116747756 + AluSq SINE Alu 1 301 -12 7451 225 74 37 chr12 27534733 27535169 -116747320 - L1MC/D LINE L1 -3218 2928 2348 1618 179 10 10 chr12 27535169 27535465 -116747024 - AluJb SINE Alu -16 296 1 7451 225 74 37 chr12 27535465 27535499 -116746990 - L1MC/D LINE L1 -3798 2348 2317 2150 215 86 40 chr12 27535506 27536274 -116746215 - L1MB8 LINE L1 -5 6567 5836 1445 169 123 0 chr12 27536274 27536534 -116745955 - AluJb SINE Alu -10 292 1 2150 215 86 40 chr12 27536534 27537507 -116744982 - L1MB8 LINE L1 -736 5836 1637 530 200 70 17 chr12 27537746 27537861 -116744628 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr12 27537870 27537894 -116744595 + AT_rich Low_complexity Low_complexity 1 24 0 2097 125 14 0 chr12 27537988 27538284 -116744205 - AluSq SINE Alu -13 300 1 2392 88 0 3 chr12 27538436 27538732 -116743757 - AluSq SINE Alu -18 295 1 1780 161 3 19 chr12 27539070 27539386 -116743103 - AluY SINE Alu 0 311 1 947 219 31 22 chr12 27539650 27539874 -116742615 - AluJo SINE Alu 0 312 87 230 263 32 68 chr12 27540443 27540633 -116741856 - AluSp SINE Alu -8 295 113 2659 141 4 57 chr12 27540803 27540833 -116741656 + MER31A LTR ERV1 1 31 -454 2502 40 0 52 chr12 27540833 27541161 -116741328 - AluY SINE Alu 0 311 1 2659 141 4 57 chr12 27541161 27541642 -116740847 + MER31A LTR ERV1 31 485 0 2034 226 74 89 chr12 27541707 27542095 -116740394 + L2 LINE L2 1759 2187 -1127 280 140 0 0 chr12 27542095 27542152 -116740337 + Tigger2 DNA MER2_type 2281 2337 -381 2034 226 74 89 chr12 27542152 27542503 -116739986 + L2 LINE L2 2187 2542 -772 2782 196 75 57 chr12 27542506 27543214 -116739275 + L1MC4 LINE L1 6966 7660 -382 1884 156 0 3 chr12 27543214 27543497 -116738992 - AluJb SINE Alu -30 282 1 2782 196 75 57 chr12 27543497 27543706 -116738783 + L1MC4 LINE L1 7660 7903 -139 333 0 0 0 chr12 27543706 27543743 -116738746 + (TG)n Simple_repeat Simple_repeat 2 38 0 2782 196 75 57 chr12 27543743 27543760 -116738729 + L1MC4 LINE L1 7903 7918 -124 2261 132 46 59 chr12 27543760 27544190 -116738299 + Tigger2 DNA MER2_type 1 435 -2283 2190 116 0 3 chr12 27544190 27544484 -116738005 + AluSq SINE Alu 5 297 -16 2261 132 46 59 chr12 27544484 27544557 -116737932 + Tigger2 DNA MER2_type 435 2718 0 443 207 60 0 chr12 27544576 27544692 -116737797 + L1MC4 LINE L1 7918 8040 -2 180 0 0 0 chr12 27544701 27544721 -116737768 + (CA)n Simple_repeat Simple_repeat 2 21 0 994 272 96 13 chr12 27544723 27545413 -116737076 + L2 LINE L2 2556 3311 -2 343 336 47 0 chr12 27545944 27546051 -116736438 + L2 LINE L2 3179 3290 -23 2857 10 0 0 chr12 27546170 27546483 -116736006 - AluYb8 SINE Alu -5 313 1 321 247 99 39 chr12 27546752 27546934 -116735555 - L1MC4 LINE L1 -27 8015 7823 334 289 173 13 chr12 27546937 27547093 -116735396 - MER5A DNA MER1_type 0 189 9 1077 108 76 58 chr12 27547130 27547292 -116735197 - Tigger5 DNA MER2_type -12 2311 2142 2289 63 0 30 chr12 27547292 27547615 -116734874 - AluY SINE Alu 0 311 1 1077 108 76 58 chr12 27547615 27547675 -116734814 - Tigger5 DNA MER2_type -181 2142 2085 494 238 66 3 chr12 27547665 27547840 -116734649 - Tigger5 DNA MER2_type -2085 238 1 * 1853 147 20 7 chr12 27547937 27548237 -116734252 - AluJb SINE Alu -8 304 1 956 227 92 109 chr12 27548412 27549093 -116733396 - L1MC5 LINE L1 -548 7494 6888 527 292 88 12 chr12 27549381 27549422 -116733067 - MER5A DNA MER1_type 0 189 153 1958 113 0 0 chr12 27549422 27549678 -116732811 - AluSq SINE Alu -57 256 1 527 292 88 12 chr12 27549678 27549807 -116732682 - MER5A DNA MER1_type -36 153 6 1849 181 45 14 chr12 27550604 27550958 -116731531 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr12 27551041 27551064 -116731425 + AT_rich Low_complexity Low_complexity 1 23 0 912 148 0 22 chr12 27551064 27551199 -116731290 + FLAM_C SINE Alu 2 133 0 208 292 69 62 chr12 27551268 27551398 -116731091 + MIR SINE MIR 132 262 0 1065 227 20 0 chr12 27552107 27552310 -116730179 - MER58A DNA MER1_type -16 208 2 353 319 183 48 chr12 27552632 27552855 -116729634 + L2 LINE L2 1716 1908 -1406 2056 133 0 29 chr12 27552855 27553164 -116729325 - AluSg SINE Alu -10 300 1 353 319 183 48 chr12 27553164 27553904 -116728585 + L2 LINE L2 1908 2809 -505 2434 61 0 3 chr12 27554146 27554439 -116728050 + AluSg SINE Alu 1 292 -18 1465 215 28 28 chr12 27554916 27555270 -116727219 - MLT1A1 LTR MaLR 0 365 12 477 185 69 69 chr12 27555444 27555494 -116726995 - L1MA10 LINE L1 -3 6317 6268 2511 68 0 0 chr12 27555494 27555790 -116726699 - AluY SINE Alu -15 296 1 477 185 69 69 chr12 27555790 27555904 -116726585 - L1MA10 LINE L1 -51 6269 5997 195 161 0 0 chr12 27556606 27556637 -116725852 + L2 LINE L2 3266 3296 -17 226 189 38 0 chr12 27557061 27557114 -116725375 + (CA)n Simple_repeat Simple_repeat 2 56 0 1073 154 123 26 chr12 27557216 27557411 -116725078 + AluJo SINE Alu 5 218 -94 225 260 0 0 chr12 27557432 27557482 -116725007 + Alu SINE Alu 84 133 0 435 343 7 7 chr12 27558503 27558646 -116723843 - MIR SINE MIR -73 189 47 360 216 0 14 chr12 27558880 27558954 -116723535 + MIR SINE MIR 74 146 -116 2227 112 7 0 chr12 27560836 27561131 -116721358 - AluSx SINE Alu -15 297 1 2306 104 3 3 chr12 27561160 27561468 -116721021 - AluSc SINE Alu -1 308 1 450 187 21 0 chr12 27561828 27561932 -116720557 - L1ME LINE L1 -303 5818 5708 426 280 0 68 chr12 27562518 27562650 -116719839 + MER5B DNA MER1_type 1 123 -55 1860 256 87 55 chr12 27562689 27563808 -116718681 - L1ME3A LINE L1 -76 6094 4896 1246 162 73 8 chr12 27563808 27564042 -116718447 + L1PB4 LINE L1 5905 6153 -3 1860 256 87 55 chr12 27564042 27564599 -116717890 - L1ME3A LINE L1 -1274 4896 4359 776 172 8 8 chr12 27564606 27564728 -116717761 - FLAM_C SINE Alu -20 123 2 208 239 2 65 chr12 27564768 27564835 -116717654 + MER5B DNA MER1_type 123 177 -1 273 207 35 17 chr12 27565044 27565102 -116717387 + L2 LINE L2 3208 3266 -6 290 271 14 0 chr12 27565108 27565178 -116717311 + MIR SINE MIR 79 149 -113 210 253 48 60 chr12 27567036 27567119 -116715370 + MIR SINE MIR 111 192 -70 2377 71 7 0 chr12 27567749 27568046 -116714443 + AluSg SINE Alu 1 299 -11 321 254 6 85 chr12 27568427 27568604 -116713885 + MER31-int LTR ERV1 1050 1212 -3724 22 0 0 0 chr12 27569354 27569376 -116713113 + GC_rich Low_complexity Low_complexity 1 22 0 2378 137 146 2 chr12 27570175 27570599 -116711890 - MER31A LTR ERV1 0 485 1 23 0 0 0 chr12 27571041 27571064 -116711425 + AT_rich Low_complexity Low_complexity 1 23 0 520 285 120 51 chr12 27571075 27571437 -116711052 + L1ME4a LINE L1 5290 5696 -425 1121 167 0 0 chr12 27571437 27571605 -116710884 + FAM SINE Alu 1 168 -7 520 285 120 51 chr12 27571605 27571733 -116710756 + L1ME4a LINE L1 5696 5814 -307 2209 111 0 13 chr12 27571853 27572159 -116710330 - AluSg SINE Alu -8 302 1 692 181 0 68 chr12 27572164 27572222 -116710267 - FLAM_A SINE Alu -185 126 66 4396 81 43 5 chr12 27572222 27572781 -116709708 - LTR19B LTR ERV1 0 580 1 692 181 0 68 chr12 27572781 27572855 -116709634 - FLAM_A SINE Alu -245 66 3 341 279 10 0 chr12 27572886 27572990 -116709499 + L1ME4a LINE L1 5955 6059 -62 1630 190 10 10 chr12 27573553 27573671 -116708818 + AluJo SINE Alu 1 118 -194 258 32 0 0 chr12 27573671 27573702 -116708787 + (CA)n Simple_repeat Simple_repeat 2 32 0 1630 190 10 10 chr12 27573702 27573878 -116708611 + AluJo SINE Alu 117 295 -17 183 184 0 0 chr12 27573896 27573934 -116708555 + GA-rich Low_complexity Low_complexity 3 40 0 241 311 63 122 chr12 27574212 27574434 -116708055 - L2 LINE L2 -36 3236 3028 2135 121 3 7 chr12 27574488 27574794 -116707695 + AluSx SINE Alu 1 305 -7 330 184 146 19 chr12 27575111 27575214 -116707275 + L1MC5 LINE L1 7815 7930 -31 1213 194 9 0 chr12 27575501 27575718 -116706771 + MER20 DNA MER1_type 1 219 0 198 345 48 48 chr12 27576193 27576361 -116706128 + L2 LINE L2 2489 2656 -658 2219 49 3 28 chr12 27576893 27577224 -116705265 + AluY SINE Alu 1 324 0 242 245 163 10 chr12 27578247 27578323 -116704166 - L1M4 LINE L1 -1568 4578 4482 2149 85 30 7 chr12 27578323 27578628 -116703861 - AluSx SINE Alu 0 312 1 242 245 163 10 chr12 27578628 27578649 -116703840 - L1M4 LINE L1 -1664 4482 4466 238 193 18 18 chr12 27578773 27578830 -116703659 - Tigger3(Golem) DNA MER2_type 0 3038 2982 * 1682 158 56 16 chr12 27578819 27579141 -116703348 - Tigger3(Golem) DNA MER2_type -878 2151 20 181 346 112 9 chr12 27580003 27580110 -116702379 + L2 LINE L2 3155 3272 0 2432 82 0 0 chr12 27581963 27582257 -116700232 - AluSg SINE Alu -16 294 1 1446 169 22 117 chr12 27582553 27582956 -116699533 - MLT1A1 LTR MaLR 0 365 1 787 228 131 19 chr12 27584882 27585150 -116697339 + L1MDa LINE L1 1911 2208 -4332 1081 215 28 20 chr12 27585155 27585402 -116697087 - AluJo SINE Alu 0 312 64 344 162 128 74 chr12 27585416 27585564 -116696925 + L1MDa LINE L1 2304 2459 -4081 2326 83 14 0 chr12 27585947 27586237 -116696252 - AluSp SINE Alu -19 294 1 274 192 0 0 chr12 27586640 27586692 -116695797 - HERVL-E LTR ERVL -5600 54 3 361 281 29 47 chr12 27586710 27586881 -116695608 - MLT2E LTR ERVL -6 622 455 550 361 25 25 chr12 27587106 27587538 -116694951 + HERVL40 LTR ERVL 1186 1617 -3913 2333 197 66 42 chr12 27587599 27588172 -116694317 + MER92B LTR ERV1 3 589 -47 1408 199 108 38 chr12 27588181 27588522 -116693967 - MLT1A1 LTR MaLR 0 365 1 637 161 125 36 chr12 27588598 27588766 -116693723 - LTR68 LTR ERV1 -557 183 1 360 241 229 26 chr12 27588777 27589043 -116693446 + L1M4 LINE L1 2884 3203 -2943 2181 82 0 21 chr12 27589171 27589462 -116693027 + AluSq SINE Alu 8 292 -21 22 35 0 0 chr12 27589463 27589492 -116692997 + AT_rich Low_complexity Low_complexity 1 29 0 1623 172 22 4 chr12 27589495 27589768 -116692721 - AluJo SINE Alu -31 281 4 2062 117 0 3 chr12 27589791 27590082 -116692407 - AluSq SINE Alu -23 290 1 799 177 61 37 chr12 27590094 27590258 -116692231 + AluJb SINE Alu 132 299 -13 12110 31 1 1 chr12 27590470 27592590 -116689899 - L1PA3 LINE L1 0 6155 4034 342 207 0 46 chr12 27592770 27592857 -116689632 + HsTC2 DNA Tc2 1818 1900 0 668 296 128 24 chr12 27592858 27593521 -116688968 + L1M4 LINE L1 3850 4581 -1565 279 274 115 45 chr12 27593639 27593796 -116688693 + L1M4 LINE L1 4775 4942 -1204 806 93 124 0 chr12 27593850 27593979 -116688510 + L1MB7 LINE L1 6040 6184 0 1986 99 3 21 chr12 27593989 27594271 -116688218 + AluSg SINE Alu 27 303 -7 2365 80 7 0 chr12 27594279 27594579 -116687910 + AluSp SINE Alu 1 302 -11 2054 109 0 4 chr12 27594690 27594966 -116687523 - AluY SINE Alu -22 289 15 447 230 207 0 chr12 27595408 27595543 -116686946 + MIR SINE MIR 14 176 -86 6358 37 0 0 chr12 27595547 27596254 -116686235 - L1PA5 LINE L1 -1 6153 5447 18228 60 6 0 chr12 27596254 27598583 -116683906 + L1P LINE L1 1179 3521 -2625 432 335 63 0 chr12 27598628 27598786 -116683703 - HERV16 LTR ERVL -2573 2423 2256 27 49 0 0 chr12 27598786 27598827 -116683662 + AT_rich Low_complexity Low_complexity 1 41 0 1102 306 59 40 chr12 27598850 27599444 -116683045 - HERV16 LTR ERVL -2718 2278 1674 489 196 98 0 chr12 27599451 27599563 -116682926 - L1ME2 LINE L1 -249 5915 5793 352 348 27 11 chr12 27599586 27599773 -116682716 - HERV16 LTR ERVL -4084 1680 1491 869 286 84 69 chr12 27599916 27600169 -116682320 - HERV16 LTR ERVL -3976 1020 772 2630 132 44 0 chr12 27600169 27600579 -116681910 - MSTA LTR MaLR 0 428 1 869 286 84 69 chr12 27600579 27601074 -116681415 - HERV16 LTR ERVL -4224 772 261 580 177 0 0 chr12 27601160 27601256 -116681233 - AluJb SINE Alu -9 303 208 2553 199 66 19 chr12 27601259 27601924 -116680565 - L1ME1 LINE L1 -58 6108 5413 692 164 30 0 chr12 27601932 27602066 -116680423 - L1MA10 LINE L1 -17 6317 6180 973 209 63 66 chr12 27602083 27602499 -116679990 - L1ME1 LINE L1 -327 5839 5555 1337 203 95 70 chr12 27602541 27602918 -116679571 + Charlie7 DNA MER1_type 1720 2117 -495 631 89 20 10 chr12 27602918 27603019 -116679470 - L1MA5A LINE L1 -3 6294 6193 1337 203 95 70 chr12 27603019 27603199 -116679290 + Charlie7 DNA MER1_type 2117 2291 -321 931 170 4 69 chr12 27603180 27603427 -116679062 + Charlie1 DNA MER1_type 1852 2082 -679 * 895 110 24 8 chr12 27603477 27603604 -116678885 + AluSq/x SINE Alu 5 133 -179 21 0 0 0 chr12 27603702 27603723 -116678766 + AT_rich Low_complexity Low_complexity 1 21 0 383 301 110 22 chr12 27604517 27604653 -116677836 + MIR SINE MIR 4 151 -111 22 0 0 0 chr12 27604719 27604741 -116677748 + AT_rich Low_complexity Low_complexity 1 22 0 1375 159 130 32 chr12 27604788 27604924 -116677565 - AluJb SINE Alu -8 304 183 2438 91 0 0 chr12 27604924 27605221 -116677268 - AluSc SINE Alu -12 297 1 1375 159 130 32 chr12 27605221 27605361 -116677128 - AluJb SINE Alu -129 183 1 1907 185 28 23 chr12 27605419 27605813 -116676676 + MSTD LTR MaLR 1 396 0 212 238 88 12 chr12 27605846 27605926 -116676563 - MIR SINE MIR -132 130 45 2370 97 0 0 chr12 27606073 27606371 -116676118 + AluSx SINE Alu 1 298 -14 753 255 75 82 chr12 27606570 27606879 -116675610 - L2 LINE L2 0 3313 3006 1830 131 42 7 chr12 27606879 27607162 -116675327 - AluSx SINE Alu -19 293 1 753 255 75 82 chr12 27607162 27607280 -116675209 - L2 LINE L2 -307 3006 2889 5227 121 18 10 chr12 27607633 27608502 -116673987 - L1PA13 LINE L1 0 6163 5288 1205 198 8 4 chr12 27608702 27608960 -116673529 + L1MB8 LINE L1 5920 6178 0 2039 138 21 0 chr12 27608983 27609272 -116673217 + AluSg SINE Alu 3 297 -13 285 218 109 27 chr12 27609305 27609452 -116673037 + L1ME3 LINE L1 2098 2256 -4140 1042 295 28 28 chr12 27609514 27609947 -116672542 + L1ME3 LINE L1 4803 5238 -977 1874 155 0 13 chr12 27609947 27610250 -116672239 + AluJo SINE Alu 1 299 -13 1042 295 28 28 chr12 27610250 27610325 -116672164 + L1ME3 LINE L1 5237 5311 -904 1883 142 18 0 chr12 27610330 27610612 -116671877 - AluSx SINE Alu -25 287 1 2600 97 66 2 chr12 27610669 27611094 -116671395 - HSMAR2 DNA Mariner 0 1302 851 1074 140 0 6 chr12 27611111 27611268 -116671221 - AluSg/x SINE Alu -20 292 137 5424 108 7 22 chr12 27611269 27611354 -116671135 - HSMAR2 DNA Mariner -453 849 764 2010 147 16 7 chr12 27611354 27611661 -116670828 - AluJb SINE Alu -2 310 1 5424 108 7 22 chr12 27611661 27612436 -116670053 - HSMAR2 DNA Mariner -538 764 2 2044 238 106 21 chr12 27612439 27613254 -116669235 + L1ME3 LINE L1 5340 6223 -8 887 171 0 0 chr12 27613425 27613554 -116668935 + FLAM_C SINE Alu 2 130 -13 279 0 0 0 chr12 27613596 27613627 -116668862 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 313 154 0 0 chr12 27613630 27613682 -116668807 - FLAM_A SINE Alu -25 108 57 899 103 48 0 chr12 27613682 27613808 -116668681 + AluJb SINE Alu 164 295 -17 445 274 61 5 chr12 27614129 27614326 -116668163 - LTR33A LTR ERVL -18 505 298 505 150 0 0 chr12 27614434 27614514 -116667975 - AluJ/FLAM SINE Alu -232 80 1 630 167 46 0 chr12 27614768 27614876 -116667613 + FLAM_C SINE Alu 12 124 -19 24 0 0 0 chr12 27614882 27614906 -116667583 + AT_rich Low_complexity Low_complexity 1 24 0 2156 111 7 0 chr12 27615032 27615329 -116667160 - AluSq SINE Alu -4 309 11 1894 156 17 0 chr12 27615494 27615789 -116666700 - AluSx SINE Alu -12 300 1 289 225 0 0 chr12 27616066 27616137 -116666352 + LTR67 LTR ERVL 487 557 0 2315 108 19 35 chr12 27616310 27616680 -116665809 + THE1B LTR MaLR 1 364 0 1890 129 3 3 chr12 27617074 27617383 -116665106 + AluY SINE Alu 1 309 -2 859 0 44 50 chr12 27617383 27617563 -116664926 + (TA)n Simple_repeat Simple_repeat 2 180 0 294 200 0 0 chr12 27617563 27617623 -116664866 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 225 0 0 0 chr12 27617623 27617648 -116664841 + (TG)n Simple_repeat Simple_repeat 2 26 0 302 306 85 10 chr12 27617652 27617851 -116664638 + LTR16A1 LTR ERVL 213 426 -31 2860 3 0 0 chr12 27617855 27618164 -116664325 - AluYa5 SINE Alu -2 309 1 646 155 0 48 chr12 27618235 27618422 -116664067 + CT-rich Low_complexity Low_complexity 1 178 0 867 124 7 27 chr12 27618430 27618735 -116663754 + (TTC)n Simple_repeat Simple_repeat 1 298 0 380 214 22 11 chr12 27618735 27618824 -116663665 + CT-rich Low_complexity Low_complexity 4 93 0 463 211 19 0 chr12 27618824 27618928 -116663561 - FLAM_A SINE Alu 0 142 37 22 0 0 0 chr12 27620245 27620267 -116662222 + AT_rich Low_complexity Low_complexity 1 22 0 199 267 0 0 chr12 27620819 27620864 -116661625 - L2 LINE L2 0 3313 3269 207 210 37 25 chr12 27620922 27621003 -116661486 + GA-rich Low_complexity Low_complexity 4 85 0 224 222 0 0 chr12 27621726 27621771 -116660718 - MIR SINE MIR 0 262 218 242 342 138 0 chr12 27621812 27621964 -116660525 - MIR SINE MIR -19 243 71 264 335 40 46 chr12 27622168 27622320 -116660169 + MIR3 SINE MIR 35 185 -23 431 204 91 38 chr12 27622335 27622467 -116660022 - L1ME3A LINE L1 -26 6144 6006 527 259 167 11 chr12 27622472 27622742 -116659747 - L1ME3A LINE L1 -181 5989 5678 259 263 113 17 chr12 27623362 27623506 -116658983 + MIR3 SINE MIR 22 186 -22 2269 96 7 3 chr12 27623668 27623971 -116658518 - AluSp SINE Alu -9 304 1 1766 174 7 26 chr12 27624240 27624550 -116657939 - AluJo SINE Alu -7 305 2 372 22 0 0 chr12 27625319 27625364 -116657125 + (TG)n Simple_repeat Simple_repeat 2 46 0 14929 90 12 5 chr12 27626481 27628967 -116653522 - L1PA8 LINE L1 0 6172 3668 342 0 0 0 chr12 27628967 27629005 -116653484 + (TG)n Simple_repeat Simple_repeat 2 39 0 14929 90 12 5 chr12 27629005 27629480 -116653009 - L1PA8 LINE L1 -2504 3668 3198 1548 147 4 0 chr12 27629480 27629711 -116652778 + AluSx SINE Alu 64 295 -17 21 0 0 0 chr12 27630299 27630320 -116652169 + AT_rich Low_complexity Low_complexity 1 21 0 453 252 82 10 chr12 27630411 27630617 -116651872 - L1MC4 LINE L1 -97 7945 7725 1078 42 0 0 chr12 27630685 27630805 -116651684 + AluSp SINE Alu 13 132 -181 2434 74 0 0 chr12 27630807 27631106 -116651383 + AluY SINE Alu 1 299 -12 755 262 109 49 chr12 27631115 27631566 -116650923 - L1MC4 LINE L1 -397 7645 7168 620 135 0 0 chr12 27632545 27632634 -116649855 - AluJ/FLAM SINE Alu -223 89 1 266 340 80 69 chr12 27633335 27633360 -116649129 - L2 LINE L2 -22 3250 3227 2039 147 3 0 chr12 27633360 27633659 -116648830 - AluSx SINE Alu -12 300 1 266 340 80 69 chr12 27633659 27633921 -116648568 - L2 LINE L2 -45 3227 2960 207 0 0 0 chr12 27634610 27634633 -116647856 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 395 264 82 25 chr12 27635171 27635330 -116647159 - MIR SINE MIR -50 212 45 2107 110 6 28 chr12 27635682 27635714 -116646775 - AluSq SINE Alu -2 311 280 351 0 0 0 chr12 27635714 27635753 -116646736 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2107 110 6 28 chr12 27635753 27636038 -116646451 - AluSq SINE Alu -33 280 1 1876 102 117 7 chr12 27637632 27637906 -116644583 - AluSg1 SINE Alu -5 304 1 2058 134 10 3 chr12 27637961 27638266 -116644223 - AluSg SINE Alu -3 307 1 292 239 67 44 chr12 27638412 27638592 -116643897 - L1ME4a LINE L1 -11 6110 5927 339 340 111 0 chr12 27638730 27638892 -116643597 - L1ME4a LINE L1 -405 5716 5537 234 302 0 0 chr12 27638963 27639016 -116643473 + (CACG)n Simple_repeat Simple_repeat 2 54 0 2018 125 0 20 chr12 27639840 27640143 -116642346 - AluSx SINE Alu -15 297 1 969 202 22 0 chr12 27640155 27640333 -116642156 - FRAM SINE Alu -1 175 1 723 299 33 12 chr12 27640335 27640576 -116641913 - MIR SINE MIR -8 254 9 2554 104 14 14 chr12 27641160 27641524 -116640965 - THE1B LTR MaLR 0 364 1 1094 218 33 17 chr12 27642107 27642516 -116639973 + MLT2B1 LTR ERVL 1 466 -54 223 118 78 0 chr12 27642529 27642580 -116639909 + CT-rich Low_complexity Low_complexity 4 58 0 241 179 0 0 chr12 27642580 27642643 -116639846 + MLT2C2 LTR ERVL 420 464 0 25 51 0 0 chr12 27642645 27642684 -116639805 + AT_rich Low_complexity Low_complexity 1 39 0 1588 219 60 7 chr12 27642730 27643164 -116639325 + L1MD3 LINE L1 7529 7985 -10 2347 97 0 3 chr12 27643172 27643470 -116639019 + AluSq SINE Alu 1 297 -16 291 130 0 0 chr12 27643795 27643841 -116638648 + L1MB3 LINE L1 6099 6144 -39 1485 148 48 14 chr12 27643865 27644155 -116638334 - L1MA6 LINE L1 -2 6298 5999 737 206 85 0 chr12 27644901 27645090 -116637399 - MER3 DNA MER1_type -4 205 1 865 128 55 8 chr12 27645296 27645519 -116636970 - L1MA9 LINE L1 -5 6307 6053 203 218 168 59 chr12 27646219 27646320 -116636169 + MIR SINE MIR 42 153 -109 15111 47 1 1 chr12 27646840 27648826 -116633663 + L1P LINE L1 1135 3121 -3025 556 330 152 35 chr12 27649504 27650016 -116632473 + L2 LINE L2 2337 2908 -406 363 302 208 0 chr12 27650184 27650343 -116632146 - MER91A DNA MER1_type -1 195 4 622 99 0 0 chr12 27651302 27651393 -116631096 - MLT1C LTR MaLR -376 91 1 225 151 0 0 chr12 27651585 27651638 -116630851 + CT-rich Low_complexity Low_complexity 1 53 0 1948 145 3 3 chr12 27652147 27652465 -116630024 - AluJb SINE Alu 0 318 1 273 29 0 0 chr12 27652742 27652776 -116629713 + (CAT)n Simple_repeat Simple_repeat 1 34 0 1731 186 17 13 chr12 27653571 27653872 -116628617 + AluJb SINE Alu 1 302 -10 207 288 51 0 chr12 27654291 27654350 -116628139 + L2 LINE L2 3205 3266 -6 1171 196 0 2 chr12 27654473 27654770 -116627719 + MER2 DNA MER2_type 1 344 -1 2780 124 59 40 chr12 27655219 27655815 -116626674 + MER4B LTR ERV1 1 774 -5 1884 142 45 3 chr12 27656119 27656449 -116626040 + MER2 DNA MER2_type 1 344 0 242 220 34 0 chr12 27656590 27656649 -116625840 + L2 LINE L2 2405 2465 -849 321 215 25 0 chr12 27656731 27656810 -116625679 + L1ME2 LINE L1 6076 6156 -8 260 266 28 9 chr12 27656830 27656939 -116625550 + (TA)n Simple_repeat Simple_repeat 2 112 0 1038 261 53 57 chr12 27656951 27657079 -116625410 + L2 LINE L2 2557 2684 -629 2508 61 3 6 chr12 27657079 27657391 -116625098 - AluY SINE Alu 0 311 1 1038 261 53 57 chr12 27657391 27657781 -116624708 + L2 LINE L2 2684 3068 -245 631 232 197 10 chr12 27657821 27658019 -116624470 + MIR SINE MIR 4 238 -24 277 233 60 45 chr12 27658037 27658170 -116624319 + L2 LINE L2 3098 3232 -81 293 257 0 43 chr12 27658246 27658316 -116624173 + L2 LINE L2 3247 3313 0 1083 187 98 0 chr12 27658369 27658572 -116623917 - MER58A DNA MER1_type -1 223 1 408 241 89 9 chr12 27659597 27659709 -116622780 - MER5C DNA MER1_type -201 123 3 352 204 120 56 chr12 27659828 27659936 -116622553 + L2 LINE L2 3188 3302 -11 1804 169 7 3 chr12 27660592 27660899 -116621590 + AluJb SINE Alu 1 308 -4 1764 153 51 4 chr12 27662166 27662441 -116620048 + AluJb SINE Alu 1 288 -24 743 211 69 18 chr12 27662449 27662724 -116619765 - L1MC5 LINE L1 -71 7890 7602 1905 140 35 3 chr12 27662750 27663036 -116619453 - AluSx SINE Alu -17 295 1 495 182 34 0 chr12 27663055 27663143 -116619346 + FLAM_A SINE Alu 34 124 -18 556 230 9 0 chr12 27663618 27663731 -116618758 - MER5A DNA MER1_type -15 174 61 2143 123 0 23 chr12 27663741 27664050 -116618439 - AluSx SINE Alu 0 312 11 201 147 0 0 chr12 27664050 27664084 -116618405 - MER5A DNA MER1_type -117 72 39 1502 118 8 0 chr12 27664152 27664389 -116618100 - L1MA3 LINE L1 -3 6302 6064 1919 147 13 19 chr12 27665402 27665716 -116616773 - AluJo SINE Alu 0 312 1 422 333 113 5 chr12 27666074 27666296 -116616193 - LTR16C LTR ERVL -121 370 125 690 228 181 20 chr12 27666588 27666870 -116615619 - L1ME2 LINE L1 -69 6097 5770 403 238 66 13 chr12 27667180 27667331 -116615158 - L1M4 LINE L1 -3382 2764 2606 316 215 86 0 chr12 27667367 27667460 -116615029 + L1MEc LINE L1 2148 2248 -4148 791 240 107 8 chr12 27667500 27667863 -116614626 - L1M4 LINE L1 -3608 2538 2140 1567 98 18 0 chr12 27667887 27668112 -116614377 - L1PB3 LINE L1 -3 6151 5923 461 176 0 22 chr12 27668274 27668365 -116614124 + FLAM_A SINE Alu 43 131 -11 360 308 128 31 chr12 27668366 27668561 -116613928 - L1ME2 LINE L1 -634 5530 5317 183 235 35 96 chr12 27668715 27668830 -116613659 + L2 LINE L2 3103 3210 -103 * 225 234 13 13 chr12 27668828 27668905 -116613584 + MER5C DNA MER1_type 71 147 -177 35857 80 9 18 chr12 27669262 27675463 -116607026 - L1PA6 LINE L1 -7 6147 11 263 295 104 42 chr12 27676250 27676443 -116606046 + MIR SINE MIR 35 239 -23 208 224 0 20 chr12 27676484 27676533 -116605956 + (TG)n Simple_repeat Simple_repeat 2 49 0 259 146 218 0 chr12 27677309 27677364 -116605125 - MER5A DNA MER1_type -114 75 9 828 163 45 67 chr12 27677451 27677629 -116604860 - FAM SINE Alu -1 174 1 212 309 68 34 chr12 27677634 27677841 -116604648 + L2 LINE L2 2235 2448 -866 846 63 102 8 chr12 27678920 27679047 -116603442 - MER85 DNA T2_type 0 139 1 291 281 34 0 chr12 27679277 27679366 -116603123 - LTR33 LTR ERVL -425 96 5 483 18 0 0 chr12 27679366 27679422 -116603067 + (CA)n Simple_repeat Simple_repeat 1 56 0 26 0 0 0 chr12 27679608 27679634 -116602855 + AT_rich Low_complexity Low_complexity 1 26 0 1039 242 43 62 chr12 27679652 27680069 -116602420 + MLT1I LTR MaLR 1 409 0 194 286 18 0 chr12 27680069 27680125 -116602364 + L3b LINE CR1 1526 1582 -1 2265 104 7 3 chr12 27680609 27680908 -116601581 - AluSx SINE Alu -12 300 1 541 270 101 0 chr12 27681110 27681288 -116601201 - L3 LINE CR1 -745 832 637 632 158 0 0 chr12 27681652 27681753 -116600736 + AluJ/FLAM SINE Alu 1 101 -211 1605 180 22 33 chr12 27681856 27682218 -116600271 + MER63 DNA MER1_type 703 1060 0 477 252 46 136 chr12 27682328 27682461 -116600028 - LTR33 LTR ERVL -9 512 369 362 160 0 85 chr12 27682461 27682555 -116599934 + L1MB8 LINE L1 6087 6172 -6 477 252 46 136 chr12 27682555 27682810 -116599679 - LTR33 LTR ERVL -152 369 159 477 258 49 72 chr12 27682949 27683213 -116599276 - MIR SINE MIR 0 262 5 2374 85 10 0 chr12 27683225 27683531 -116598958 - AluSq SINE Alu -4 309 1 296 233 19 19 chr12 27683566 27683669 -116598820 + L1MC/D LINE L1 5704 5806 -2002 1219 150 40 22 chr12 27683716 27683919 -116598570 + L1MB3 LINE L1 5496 5705 -586 2351 126 54 54 chr12 27683919 27684089 -116598400 - MER65C LTR ERV1 0 461 292 1928 157 3 7 chr12 27684089 27684394 -116598095 - AluJb SINE Alu -8 304 1 2351 126 54 54 chr12 27684394 27684684 -116597805 - MER65C LTR ERV1 -168 293 1 1219 150 40 22 chr12 27684684 27684706 -116597783 + L1MB3 LINE L1 5705 5725 -566 12214 113 5 44 chr12 27684714 27687164 -116595325 + L1P3 LINE L1 2 2447 -4014 1347 250 37 61 chr12 27687847 27688458 -116594031 + L2 LINE L2 2704 3311 -2 204 216 0 0 chr12 27689105 27689142 -116593347 + CT-rich Low_complexity Low_complexity 3 39 0 1288 173 16 4 chr12 27689147 27689401 -116593088 + L1MB3 LINE L1 5925 6181 -2 487 306 47 10 chr12 27689562 27689755 -116592734 + MIR SINE MIR 27 226 -36 182 245 0 41 chr12 27691547 27691596 -116590893 + L2 LINE L2 3226 3272 0 264 284 0 11 chr12 27692624 27692712 -116589777 + L1MC5 LINE L1 7825 7911 -50 194 184 0 26 chr12 27692917 27692955 -116589534 + L3 LINE CR1 1540 1576 -1 249 103 0 0 chr12 27693883 27693922 -116588567 + tRNA-Ile-ATT tRNA tRNA 1 39 -38 230 324 184 68 chr12 27694128 27694464 -116588025 - L2 LINE L2 0 3272 2898 180 0 0 0 chr12 27694915 27694935 -116587554 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 993 203 42 0 chr12 27694937 27695096 -116587393 - AluJo SINE Alu -28 284 114 246 32 0 0 chr12 27695096 27695127 -116587362 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 993 203 42 0 chr12 27695127 27695159 -116587330 - AluJo SINE Alu -198 114 85 351 0 0 0 chr12 27695204 27695243 -116587246 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 688 144 63 0 chr12 27695243 27695354 -116587135 - FLAM_C SINE Alu -25 118 1 742 231 0 0 chr12 27696865 27696995 -116585494 - FLAM_A SINE Alu -3 130 1 24 0 0 0 chr12 27697005 27697029 -116585460 + AT_rich Low_complexity Low_complexity 1 24 0 6463 99 27 1 chr12 27698302 27699290 -116583199 + L1MA2 LINE L1 5291 6304 0 545 277 77 20 chr12 27699375 27699570 -116582919 + MIR SINE MIR 33 238 -24 13261 26 5 0 chr12 27699724 27702411 -116580078 - L1PA4 LINE L1 -3 6152 3455 2122 127 10 0 chr12 27702411 27702711 -116579778 - AluSq SINE Alu -10 303 1 212 77 26 0 chr12 27703016 27703055 -116579434 + (TC)n Simple_repeat Simple_repeat 1 40 0 257 220 17 0 chr12 27703618 27703677 -116578812 + MIR SINE MIR 57 116 -146 189 0 0 0 chr12 27703677 27703698 -116578791 + (T)n Simple_repeat Simple_repeat 1 21 0 791 187 0 15 chr12 27704133 27704267 -116578222 - FLAM_C SINE Alu -1 132 1 1252 139 0 5 chr12 27706169 27706356 -116576133 + AluSq SINE Alu 1 186 -127 2198 100 10 3 chr12 27706901 27707202 -116575287 - AluSc SINE Alu -6 303 1 2171 147 0 0 chr12 27709092 27709404 -116573085 - AluSx SINE Alu 0 312 1 2209 119 3 3 chr12 27709481 27709792 -116572697 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 27710660 27710681 -116571808 + AT_rich Low_complexity Low_complexity 1 21 0 313 297 42 8 chr12 27711297 27711415 -116571074 - MIR SINE MIR -68 140 19 1823 159 36 0 chr12 27711705 27712006 -116570483 + AluSx SINE Alu 1 312 0 467 306 50 68 chr12 27712494 27712831 -116569658 + MLT1I LTR MaLR 79 409 0 2104 135 0 13 chr12 27713128 27713439 -116569050 - AluSx SINE Alu -5 307 1 22 0 0 0 chr12 27713439 27713461 -116569028 + AT_rich Low_complexity Low_complexity 1 22 0 582 76 17 136 chr12 27713480 27713598 -116568891 + AluSg/x SINE Alu 197 300 -12 1611 238 145 4 chr12 27713600 27714146 -116568343 - LTR50 LTR ERVL -89 706 84 710 268 7 0 chr12 27714166 27714319 -116568170 + MER91A DNA MER1_type 33 186 -10 661 125 0 0 chr12 27714389 27714485 -116568004 - FRAM SINE Alu -16 160 65 925 170 20 7 chr12 27714585 27714738 -116567751 + FRAM SINE Alu 5 159 -17 1999 137 3 3 chr12 27714819 27715111 -116567378 + AluJb SINE Alu 1 292 -20 422 306 7 35 chr12 27715779 27715923 -116566566 + L2 LINE L2 3133 3272 0 419 246 57 37 chr12 27717641 27717885 -116564604 - L1ME4a LINE L1 -1 6120 5872 30 45 0 0 chr12 27717895 27717939 -116564550 + AT_rich Low_complexity Low_complexity 1 44 0 2144 143 0 0 chr12 27718004 27718305 -116564184 - AluSx SINE Alu -11 301 1 826 211 124 18 chr12 27718451 27718669 -116563820 - MIR SINE MIR -9 253 13 6412 167 23 7 chr12 27719483 27721106 -116561383 + L1PA16 LINE L1 3972 5617 -549 3471 108 2 0 chr12 27721206 27721705 -116560784 + L1PA16 LINE L1 5657 6156 -10 245 231 269 0 chr12 27722705 27722813 -116559676 - L2 LINE L2 0 3272 3136 299 340 197 7 chr12 27723003 27723150 -116559339 - MER91A DNA MER1_type -19 177 3 506 270 15 29 chr12 27723169 27723306 -116559183 - MIR SINE MIR -108 154 20 1869 131 10 28 chr12 27723470 27723787 -116558702 - AluJb SINE Alu 0 312 1 625 301 45 25 chr12 27724095 27724454 -116558035 - ERVL LTR ERVL -2060 3704 3339 1377 301 94 13 chr12 27724593 27725218 -116557271 - ERVL LTR ERVL -2139 2857 2182 343 327 7 7 chr12 27725620 27725770 -116556719 + LTR16C LTR ERVL 317 466 -25 1991 133 40 51 chr12 27726008 27726205 -116556284 - L1MA7 LINE L1 -128 6163 5965 1795 128 0 0 chr12 27726205 27726448 -116556041 - AluSx SINE Alu -69 243 1 1991 133 40 51 chr12 27726448 27726701 -116555788 - L1MA7 LINE L1 -326 5965 5718 20827 85 6 16 chr12 27726715 27730724 -116551765 - L1PA7 LINE L1 -2 6152 2184 2151 145 0 3 chr12 27781132 27781443 -116501046 + AluSx SINE Alu 1 310 -2 209 204 20 20 chr12 27783044 27783093 -116499396 + L2 LINE L2 3263 3311 -2 475 284 24 8 chr12 27783830 27783957 -116498532 - MIR SINE MIR -74 188 60 242 163 20 20 chr12 27784063 27784112 -116498377 + L2 LINE L2 3263 3311 -2 649 228 68 57 chr12 27785437 27785724 -116496765 + L1ME4a LINE L1 5534 5827 -294 2328 93 0 0 chr12 27785724 27786025 -116496464 + AluY SINE Alu 1 301 -10 649 228 68 57 chr12 27786025 27786088 -116496401 + L1ME4a LINE L1 5827 5888 -233 242 236 0 0 chr12 27786145 27786200 -116496289 + L1ME4a LINE L1 5994 6048 -73 203 291 27 95 chr12 27787099 27787247 -116495242 + L2 LINE L2 2915 3052 -220 1768 108 0 88 chr12 27787292 27787588 -116494901 - AluJb SINE Alu -23 289 20 781 258 16 0 chr12 27787610 27787796 -116494693 - MIR SINE MIR 0 262 74 996 35 0 0 chr12 27787796 27787910 -116494579 - AluY SINE Alu -11 300 187 293 317 106 6 chr12 27787993 27788148 -116494341 - MIR3 SINE MIR -21 187 15 1648 110 59 0 chr12 27788673 27788946 -116493543 + L1MA1 LINE L1 6014 6302 0 21 82 0 0 chr12 27788946 27788995 -116493494 + AT_rich Low_complexity Low_complexity 1 49 0 27 49 0 0 chr12 27789659 27789700 -116492789 + AT_rich Low_complexity Low_complexity 1 41 0 295 233 193 15 chr12 27793604 27793742 -116488747 - MIR SINE MIR -61 147 36 358 268 63 7 chr12 27793852 27793994 -116488495 - MLT1L LTR MaLR -13 602 453 517 102 159 11 chr12 27793995 27794083 -116488406 + FLAM_A SINE Alu 14 114 -28 2084 87 0 108 chr12 27794273 27794608 -116487881 - AluSx SINE Alu -13 299 1 481 229 133 33 chr12 27794620 27794830 -116487659 - MLT1L LTR MaLR -326 289 59 2039 112 24 0 chr12 27795406 27795700 -116486789 - AluSx SINE Alu -11 301 1 368 271 157 18 chr12 27796110 27796276 -116486213 + MER5A DNA MER1_type 1 189 0 328 206 16 0 chr12 27796371 27796434 -116486055 + L2 LINE L2 3250 3313 0 2088 108 13 16 chr12 27796649 27796954 -116485535 + AluSx SINE Alu 1 304 -8 2079 107 0 0 chr12 27797313 27797615 -116484874 - AluY SINE Alu 0 302 1 240 113 19 38 chr12 27797634 27797687 -116484802 - L1MB2 LINE L1 -35 6136 6085 247 25 50 0 chr12 27797847 27797887 -116484602 + (TTG)n Simple_repeat Simple_repeat 1 42 0 298 307 38 14 chr12 27798681 27798787 -116483702 + MIR SINE MIR 42 147 -80 345 268 69 135 chr12 27799851 27800518 -116481971 - L1M2 LINE L1 -5519 1330 524 650 214 53 64 chr12 27801349 27801536 -116480953 + MIR SINE MIR 64 248 -14 22 35 0 0 chr12 27801818 27801847 -116480642 + AT_rich Low_complexity Low_complexity 1 29 0 453 245 200 7 chr12 27801937 27802085 -116480404 - MIR SINE MIR -62 146 5 228 86 0 0 chr12 27802283 27802318 -116480171 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 217 233 30 30 chr12 27802770 27802903 -116479586 + GA-rich Low_complexity Low_complexity 5 137 0 2323 83 17 7 chr12 27803751 27804053 -116478436 + AluSx SINE Alu 1 305 -7 294 322 13 53 chr12 27804545 27804697 -116477792 + L2 LINE L2 2890 3035 -237 636 305 16 16 chr12 27804743 27804930 -116477559 + MIR SINE MIR 31 217 -45 181 306 194 48 chr12 27804965 27805217 -116477272 + L2 LINE L2 3025 3313 0 2552 113 28 7 chr12 27806037 27806472 -116476017 - L1PA13 LINE L1 -3 6160 5717 243 0 0 0 chr12 27807194 27807221 -116475268 + (T)n Simple_repeat Simple_repeat 1 27 0 1606 209 86 16 chr12 27807483 27807914 -116474575 - L1MC4a LINE L1 0 7808 7348 1215 134 5 11 chr12 27807952 27808139 -116474350 - AluJb SINE Alu -8 304 119 265 292 14 111 chr12 27808224 27808330 -116474159 + L2 LINE L2 3143 3233 -39 1699 166 41 17 chr12 27808330 27808620 -116473869 - AluJo SINE Alu -15 297 1 265 292 14 111 chr12 27808620 27808657 -116473832 + L2 LINE L2 3233 3272 0 21 0 0 0 chr12 27809157 27809178 -116473311 + AT_rich Low_complexity Low_complexity 1 21 0 3884 164 22 28 chr12 27809534 27810748 -116471741 - L1P5 LINE L1 -555 5596 4403 3800 70 14 8 chr12 27810748 27811266 -116471223 + L1PB1 LINE L1 5630 6150 -1 206 351 98 11 chr12 27811498 27811672 -116470817 - L2 LINE L2 -384 2930 2742 1725 144 53 51 chr12 27813221 27813439 -116469050 - MER46B DNA MER2_type -2495 236 140 6306 185 28 21 chr12 27813439 27815633 -116466856 - L1PA16 LINE L1 -5 6161 3958 1725 144 53 51 chr12 27815633 27815769 -116466720 - MER46B DNA MER2_type -2591 140 6 390 345 34 8 chr12 27815781 27816045 -116466444 + L1ME4a LINE L1 5562 5832 -289 2548 173 44 26 chr12 27816108 27816651 -116465838 - MER74A LTR ERVL -1 557 5 1868 145 7 7 chr12 27816728 27817024 -116465465 + AluJo SINE Alu 1 296 -16 2198 117 0 0 chr12 27817041 27817340 -116465149 + AluSx SINE Alu 3 301 -11 398 181 55 87 chr12 27818155 27818282 -116464207 + MIR SINE MIR 61 183 -79 255 298 104 113 chr12 27818838 27819261 -116463228 + L2 LINE L2 2836 3254 -18 260 333 72 42 chr12 27819493 27819757 -116462732 - L3 LINE CR1 -690 887 616 288 343 69 0 chr12 27820483 27820585 -116461904 - L2 LINE L2 -6 3307 3199 2296 149 49 10 chr12 27820848 27821257 -116461232 - MSTB1 LTR MaLR -3 429 5 2241 88 0 7 chr12 27821456 27821764 -116460725 + AluSx SINE Alu 1 306 0 1617 176 9 46 chr12 27822211 27822534 -116459955 + AluJb SINE Alu 1 311 -1 337 257 0 0 chr12 27822534 27822604 -116459885 - MIR3 SINE MIR -46 162 93 221 268 18 0 chr12 27822826 27822882 -116459607 + L3 LINE CR1 403 459 -1118 382 262 177 0 chr12 27823094 27823235 -116459254 - MIR SINE MIR 0 262 97 1314 247 8 41 chr12 27823238 27823631 -116458858 + MLT2C1 LTR ERVL 18 397 0 957 180 114 9 chr12 27823804 27824015 -116458474 + MIR SINE MIR 16 248 -14 2154 141 0 3 chr12 27825777 27826089 -116456400 + AluSx SINE Alu 1 311 -1 8339 152 10 14 chr12 27826498 27828234 -116454255 + L1P4 LINE L1 3751 5473 -695 1223 66 0 0 chr12 27828234 27828386 -116454103 + AluY SINE Alu 144 295 -16 1416 119 31 0 chr12 27828387 27828613 -116453876 + L1P4 LINE L1 5481 5713 -450 1043 263 50 3 chr12 27828746 27829122 -116453367 - L1ME LINE L1 -521 5649 5256 7498 30 0 1 chr12 27829271 27830733 -116451756 - L1PA4 LINE L1 -1 6154 4693 2206 119 3 0 chr12 27830791 27831094 -116451395 - AluSq SINE Alu -9 304 1 1492 181 19 45 chr12 27831361 27831531 -116450958 - AluJb SINE Alu -10 302 129 198 0 0 0 chr12 27831531 27831553 -116450936 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2051 113 7 4 chr12 27831554 27831828 -116450661 - AluSx SINE Alu -36 276 2 1492 181 19 45 chr12 27831828 27831965 -116450524 - AluJb SINE Alu -182 130 1 563 260 226 6 chr12 27832193 27832370 -116450119 - MIR SINE MIR -17 245 30 2194 126 0 0 chr12 27832846 27833147 -116449342 - AluSx SINE Alu -7 305 5 317 285 44 57 chr12 27834585 27834743 -116447746 + MIR SINE MIR 107 262 0 181 152 43 65 chr12 27834956 27835002 -116447487 + MIR SINE MIR 107 151 -111 2043 94 65 0 chr12 27835125 27835401 -116447088 + AluSc SINE Alu 1 294 -15 185 308 55 104 chr12 27835983 27836386 -116446103 + L2 LINE L2 2520 2902 -412 299 252 52 105 chr12 27836406 27836495 -116445994 + L2 LINE L2 3115 3207 -106 2172 99 24 7 chr12 27836495 27836789 -116445700 - AluSq SINE Alu -12 301 3 299 252 52 105 chr12 27836789 27836909 -116445580 + L2 LINE L2 3207 3313 0 588 238 26 16 chr12 27837257 27837450 -116445039 - L1MC5 LINE L1 -48 7913 7719 516 168 32 11 chr12 27838417 27838512 -116443977 + FLAM_C SINE Alu 33 129 -14 270 0 0 0 chr12 27838545 27838575 -116443914 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr12 27838813 27838834 -116443655 + AT_rich Low_complexity Low_complexity 1 21 0 230 154 19 19 chr12 27840183 27840235 -116442254 + Tigger5 DNA MER2_type 2254 2305 -18 346 194 0 0 chr12 27840245 27840307 -116442182 - Tigger5 DNA MER2_type -2235 88 27 494 139 0 12 chr12 27840330 27840416 -116442073 + Tigger5 DNA MER2_type 2238 2322 -1 1705 95 0 9 chr12 27840595 27840827 -116441662 + AluSq SINE Alu 1 230 -83 31 0 0 0 chr12 27840827 27840858 -116441631 + AT_rich Low_complexity Low_complexity 1 31 0 359 285 117 39 chr12 27841080 27841259 -116441230 + MIR SINE MIR 70 262 0 245 333 48 9 chr12 27841519 27841624 -116440865 + L3b LINE CR1 1294 1402 -181 676 193 127 54 chr12 27845604 27845770 -116436719 - MIR SINE MIR -48 214 37 519 262 49 0 chr12 27846139 27846261 -116436228 - FLAM_C SINE Alu -4 129 2 2004 147 10 0 chr12 27846273 27846572 -116435917 - AluJb SINE Alu -10 302 1 2243 92 3 0 chr12 27847789 27848096 -116434393 - AluSp SINE Alu 0 308 1 810 222 62 23 chr12 27848993 27849169 -116433320 - MIR SINE MIR -25 237 55 2320 86 10 0 chr12 27849177 27849479 -116433010 + AluY SINE Alu 1 305 -6 388 286 67 62 chr12 27849800 27849978 -116432511 - MIR SINE MIR -50 212 34 2541 48 0 0 chr12 27850446 27850737 -116431752 - AluY SINE Alu -20 291 1 272 347 48 81 chr12 27851313 27851584 -116430905 - L2 LINE L2 -34 3238 2977 241 257 106 78 chr12 27852025 27852204 -116430285 - L2 LINE L2 -108 3164 2981 480 273 48 73 chr12 27853971 27854136 -116428353 - L3 LINE CR1 -12 1565 1405 732 338 149 22 chr12 27854136 27855011 -116427478 + L2 LINE L2 2109 3091 -181 204 176 0 0 chr12 27855098 27855132 -116427357 - MIR SINE MIR -9 253 220 408 230 182 14 chr12 27855224 27855372 -116427117 - L3 LINE CR1 -317 1260 1088 316 277 31 94 chr12 27856173 27856323 -116426166 - L3 LINE CR1 -507 1070 929 2107 120 20 0 chr12 27856323 27856615 -116425874 - AluSx SINE Alu -14 298 1 608 196 0 0 chr12 27856679 27856776 -116425713 - FLAM_C SINE Alu -19 124 28 2171 93 0 14 chr12 27856797 27857087 -116425402 - AluSx SINE Alu -26 286 1 574 297 209 42 chr12 27857124 27857764 -116424725 - L3 LINE CR1 -713 864 118 914 247 189 12 chr12 27858893 27859353 -116423136 + L2 LINE L2 2747 3313 0 281 257 50 40 chr12 27860141 27860238 -116422251 + MIR SINE MIR 58 154 -54 268 267 0 13 chr12 27860302 27860377 -116422112 - MIR SINE MIR -1 261 188 188 220 40 0 chr12 27860406 27860456 -116422033 + MIR SINE MIR 211 262 0 23 68 0 0 chr12 27860768 27860812 -116421677 + AT_rich Low_complexity Low_complexity 1 44 0 1018 168 0 12 chr12 27861017 27861184 -116421305 + FRAM SINE Alu 1 165 -1 2076 124 28 0 chr12 27861259 27861549 -116420940 - AluSx SINE Alu -14 298 1 240 314 121 32 chr12 27862151 27862275 -116420214 - L2 LINE L2 -6 3307 3173 347 256 13 0 chr12 27862978 27863056 -116419433 - MER2 DNA MER2_type 0 345 267 1371 157 0 0 chr12 27863083 27863293 -116419196 - MER2 DNA MER2_type -135 210 1 538 283 98 37 chr12 27863550 27863957 -116418532 - L1ME4a LINE L1 0 6121 5690 326 192 14 27 chr12 27864010 27864083 -116418406 + L2 LINE L2 3241 3312 -1 255 116 0 23 chr12 27865349 27865392 -116417097 - MER103 DNA DNA -123 43 2 769 188 10 57 chr12 27865759 27865951 -116416538 + AluJo SINE Alu 1 183 -129 2866 3 0 0 chr12 27866237 27866546 -116415943 - AluYa5 SINE Alu -2 309 1 753 241 127 0 chr12 27866583 27866803 -116415686 + MIR SINE MIR 3 250 -12 2030 107 7 3 chr12 27866914 27867205 -116415284 + AluSx SINE Alu 1 292 -20 505 271 142 56 chr12 27867554 27868004 -116414485 + L1ME LINE L1 5293 5781 -340 645 304 75 0 chr12 27868050 27868251 -116414238 + MIR SINE MIR 47 262 0 262 256 0 61 chr12 27868461 27868543 -116413946 - MIR SINE MIR -3 259 183 386 266 184 0 chr12 27868628 27868744 -116413745 - MIR SINE MIR -67 141 20 293 266 310 0 chr12 27869461 27869574 -116412915 + MIR3 SINE MIR 33 180 -28 24 32 0 0 chr12 27870403 27870434 -116412055 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr12 27870520 27870564 -116411925 + AT_rich Low_complexity Low_complexity 1 44 0 237 232 50 20 chr12 27871459 27871558 -116410931 - L1ME4a LINE L1 0 6121 6020 455 280 142 25 chr12 27871602 27871927 -116410562 - L1ME4a LINE L1 -199 5922 5560 2145 101 3 36 chr12 27872263 27872569 -116409920 - AluSx SINE Alu -14 298 3 203 156 0 0 chr12 27872811 27872843 -116409646 + CT-rich Low_complexity Low_complexity 1 32 0 235 272 24 40 chr12 27872843 27872968 -116409521 - L1ME4a LINE L1 -1121 5025 4903 1919 133 21 7 chr12 27873054 27873340 -116409149 - AluSx SINE Alu -22 290 1 41 78 0 0 chr12 27873802 27873892 -116408597 + AT_rich Low_complexity Low_complexity 1 90 0 24 0 0 0 chr12 27874326 27874350 -116408139 + AT_rich Low_complexity Low_complexity 1 24 0 596 274 54 62 chr12 27875279 27875520 -116406969 - MIR SINE MIR -13 249 11 297 278 82 0 chr12 27875517 27875614 -116406875 - MIR SINE MIR -72 190 86 * 457 239 71 30 chr12 27875845 27876050 -116406439 - Charlie8 DNA MER1_type -1038 1379 84 211 264 11 35 chr12 27876219 27876306 -116406183 + MIR SINE MIR 168 252 -10 277 256 124 16 chr12 27876621 27876742 -116405747 + L2 LINE L2 3179 3312 -1 889 209 17 0 chr12 27878105 27878277 -116404212 - FAM SINE Alu 0 175 1 407 196 14 119 chr12 27879327 27879399 -116403090 - MER103 DNA DNA -28 138 87 2059 109 53 0 chr12 27879399 27879683 -116402806 + AluSx SINE Alu 1 299 -13 407 196 14 119 chr12 27879683 27879753 -116402736 - MER103 DNA DNA -79 87 11 1189 177 97 66 chr12 27879871 27880159 -116402330 - AluJb SINE Alu -4 298 2 21 57 0 0 chr12 27880309 27880344 -116402145 + AT_rich Low_complexity Low_complexity 1 35 0 223 398 0 23 chr12 27880540 27880628 -116401861 - MIR SINE MIR -104 104 19 202 291 0 0 chr12 27881237 27881292 -116401197 + MIR SINE MIR 158 212 -50 255 243 9 108 chr12 27882091 27882202 -116400287 + MER102a DNA MER1_type 221 320 -10 2125 95 0 14 chr12 27883327 27883611 -116398878 + AluSx SINE Alu 12 291 -21 296 339 138 28 chr12 27884045 27884372 -116398117 - L2 LINE L2 -557 2757 2395 370 259 157 0 chr12 27884389 27884555 -116397934 + L1MEd LINE L1 1043 1234 -4971 491 284 80 60 chr12 27884710 27885160 -116397329 + L1MEd LINE L1 1869 2327 -4069 2303 78 0 7 chr12 27886425 27886720 -116395769 - AluY SINE Alu -18 293 1 224 213 38 75 chr12 27886821 27886901 -116395588 - MIR SINE MIR -128 134 58 23 0 0 0 chr12 27887263 27887286 -116395203 + AT_rich Low_complexity Low_complexity 1 23 0 646 282 139 40 chr12 27887679 27887899 -116394590 + L2 LINE L2 2565 2762 -510 2297 51 41 17 chr12 27887899 27888193 -116394296 + AluY SINE Alu 1 301 -10 646 282 139 40 chr12 27888193 27888379 -116394110 + L2 LINE L2 2762 3012 -260 749 200 0 8 chr12 27888388 27888518 -116393971 + FRAM SINE Alu 1 127 -49 303 282 316 19 chr12 27888526 27888732 -116393757 + L2 LINE L2 3006 3272 0 1902 159 13 3 chr12 27889139 27889440 -116393049 + AluJb SINE Alu 2 305 -7 477 216 9 9 chr12 27889966 27890077 -116392412 - Charlie8 DNA MER1_type -1865 552 442 23 33 0 0 chr12 27890092 27890122 -116392367 + AT_rich Low_complexity Low_complexity 1 30 0 241 375 12 0 chr12 27890358 27890438 -116392051 - Charlie8 DNA MER1_type -2336 81 1 333 0 0 0 chr12 27891873 27891910 -116390579 + (CA)n Simple_repeat Simple_repeat 2 38 0 2052 81 55 0 chr12 27891914 27892185 -116390304 - AluSq SINE Alu -27 286 1 2214 81 21 0 chr12 27893701 27893985 -116388504 + AluSq SINE Alu 1 290 -23 679 155 11 0 chr12 27893985 27894159 -116388330 + (TA)n Simple_repeat Simple_repeat 1 176 0 1363 190 75 70 chr12 27894535 27894920 -116387569 - MLT1B LTR MaLR 0 390 4 445 293 144 17 chr12 27895124 27895305 -116387184 - L2 LINE L2 -1945 1369 1166 237 343 89 0 chr12 27895310 27895456 -116387033 - L2 LINE L2 -2967 347 189 771 174 252 16 chr12 27895655 27895897 -116386592 + MER33 DNA MER1_type 25 323 -1 2269 89 0 3 chr12 27897039 27897330 -116385159 - AluSc SINE Alu -19 290 1 2000 252 89 48 chr12 27899587 27899675 -116382814 - L1ME3A LINE L1 -219 5951 5868 183 42 0 0 chr12 27899675 27899699 -116382790 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1495 184 36 22 chr12 27899708 27899985 -116382504 - AluJo SINE Alu -31 281 1 2000 252 89 48 chr12 27899985 27900785 -116381704 - L1ME3A LINE L1 -309 5861 5095 1589 194 24 58 chr12 27900785 27901161 -116381328 - MLT1A1 LTR MaLR -2 363 1 2000 252 89 48 chr12 27901161 27902091 -116380398 - L1ME3A LINE L1 -1075 5095 4037 745 269 33 33 chr12 27902093 27902424 -116380065 - L1ME3A LINE L1 -2230 3916 3586 1135 275 111 18 chr12 27902433 27903363 -116379126 - L1ME3A LINE L1 -2677 3469 2454 421 287 102 28 chr12 27903539 27903793 -116378696 + L1ME4a LINE L1 5599 5871 -250 3122 139 57 9 chr12 27903810 27904335 -116378154 - MER44D DNA MER2_type 0 605 1 308 192 39 0 chr12 27904620 27904724 -116377765 + (TA)n Simple_repeat Simple_repeat 1 108 0 1981 139 7 0 chr12 27904728 27905016 -116377473 - AluSx SINE Alu -22 290 1 473 189 160 0 chr12 27905867 27905973 -116376516 + FLAM_A SINE Alu 1 123 -10 302 333 9 19 chr12 27906740 27906845 -116375644 - MIR3 SINE MIR -31 177 74 2442 87 0 3 chr12 27907468 27907778 -116374711 - AluSc SINE Alu 0 309 1 184 320 27 27 chr12 27907826 27907901 -116374588 - L2 LINE L2 -10 3262 3188 204 310 35 0 chr12 27908014 27908072 -116374417 - L2 LINE L2 -225 3047 2988 917 164 0 7 chr12 27908075 27908221 -116374268 + FRAM SINE Alu 1 144 -32 279 377 71 15 chr12 27908277 27908545 -116373944 - L2 LINE L2 -338 2976 2694 3252 171 30 39 chr12 27908608 27908856 -116373633 - L1MB4 LINE L1 -17 6163 5914 1882 129 0 8 chr12 27908856 27909120 -116373369 + AluSx SINE Alu 40 301 -11 3252 171 30 39 chr12 27909120 27909541 -116372948 - L1MB4 LINE L1 -266 5914 5498 2534 69 0 0 chr12 27909541 27909845 -116372644 - AluY SINE Alu -7 304 1 3252 171 30 39 chr12 27909845 27909901 -116372588 - L1MB4 LINE L1 -682 5498 5443 508 336 136 35 chr12 27909912 27910510 -116371979 - L2 LINE L2 -609 2705 2048 1525 183 67 3 chr12 27911101 27911401 -116371088 - MER2 DNA MER2_type -25 320 2 324 296 133 7 chr12 27911615 27911750 -116370739 + MIR SINE MIR 39 190 -72 437 257 87 108 chr12 27912034 27912516 -116369973 + L1ME4a LINE L1 5568 6039 -82 2616 52 0 3 chr12 27913591 27913900 -116368589 + AluY SINE Alu 1 308 -3 909 179 0 0 chr12 27914488 27914633 -116367856 + FRAM SINE Alu 22 166 -10 465 198 76 25 chr12 27915031 27915188 -116367301 + MER104 DNA Tc2 16 180 0 323 322 98 41 chr12 27915190 27915796 -116366693 - L2 LINE L2 -162 3110 2473 1218 99 82 0 chr12 27915803 27915985 -116366504 + MER30 DNA MER1_type 1 197 -33 245 354 31 21 chr12 27917432 27917528 -116364961 + MIR SINE MIR 17 113 -95 1582 140 121 0 chr12 27917600 27917864 -116364625 + AluJb SINE Alu 1 296 -16 2347 118 97 0 chr12 27918154 27918544 -116363945 - MSTA LTR MaLR 0 428 1 205 414 94 8 chr12 27919170 27919298 -116363191 - L2 LINE L2 -9 3263 3125 349 234 228 8 chr12 27919691 27919912 -116362577 - MER5C DNA MER1_type 0 324 1 674 261 72 10 chr12 27919959 27920166 -116362323 + MIR SINE MIR 2 221 -41 30 45 0 0 chr12 27921222 27921266 -116361223 + AT_rich Low_complexity Low_complexity 1 44 0 1600 150 86 10 chr12 27921428 27921742 -116360747 - MER44D DNA MER2_type -1 608 1 2151 133 0 31 chr12 27921904 27922226 -116360263 + AluSx SINE Alu 1 312 0 1917 120 3 3 chr12 27923498 27923782 -116358707 - AluJb SINE Alu -8 304 21 186 43 0 0 chr12 27924027 27924050 -116358439 + (TG)n Simple_repeat Simple_repeat 2 24 0 420 295 43 7 chr12 27924384 27924523 -116357966 + MIR SINE MIR 86 229 -33 321 118 0 0 chr12 27924945 27924996 -116357493 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 32 0 0 chr12 27926668 27926699 -116355790 + AT_rich Low_complexity Low_complexity 1 31 0 402 253 178 14 chr12 27927866 27927935 -116354554 - MIR SINE MIR -12 250 194 3751 109 71 12 chr12 27927935 27928539 -116353950 - L1PA16 LINE L1 -1 6165 5526 402 253 178 14 chr12 27928539 27928615 -116353874 - MIR SINE MIR -68 194 81 528 301 35 0 chr12 27928810 27928953 -116353536 + MIR SINE MIR 11 158 -104 747 310 66 0 chr12 27928959 27929172 -116353317 + MIR SINE MIR 4 230 -32 745 178 185 0 chr12 27930192 27930349 -116352140 - MER5A DNA MER1_type -3 186 1 350 287 30 10 chr12 27930577 27930678 -116351811 - L2 LINE L2 -12 3260 3158 535 148 46 9 chr12 27930748 27930856 -116351633 + MER63 DNA MER1_type 490 601 -459 1460 209 0 0 chr12 27930856 27931105 -116351384 - AluJo SINE Alu -63 249 1 229 260 0 0 chr12 27931334 27931384 -116351105 + L2 LINE L2 3264 3313 0 1439 186 23 72 chr12 27931554 27931941 -116350548 + MLT1A2 LTR MaLR 1 368 -6 274 308 55 11 chr12 27932748 27932839 -116349650 + MIR3 SINE MIR 11 105 -103 513 226 80 0 chr12 27932859 27932996 -116349493 + MLT1B LTR MaLR 1 148 -242 308 191 32 0 chr12 27932994 27933057 -116349432 + MLT1B LTR MaLR 326 390 0 * 198 314 0 0 chr12 27933094 27933145 -116349344 + L2 LINE L2 3204 3254 -18 * 231 209 0 0 chr12 27933111 27933154 -116349335 + MIR SINE MIR 217 259 -3 293 194 237 43 chr12 27933281 27933374 -116349115 - MIR SINE MIR -126 136 26 2161 110 0 0 chr12 27933920 27934243 -116348246 - AluY SINE Alu 0 323 1 597 158 18 0 chr12 27934933 27935047 -116347442 + LTR16C LTR ERVL 354 469 -22 249 152 0 22 chr12 27935375 27935421 -116347068 + MER75 DNA T2_type 469 513 -1 196 327 19 45 chr12 27935820 27935976 -116346513 - L2 LINE L2 -820 2494 2343 202 264 0 75 chr12 27936176 27936229 -116346260 - L3 LINE CR1 -102 1475 1427 508 208 190 18 chr12 27936237 27936458 -116346031 + MIR SINE MIR 4 262 0 263 291 171 17 chr12 27938957 27939074 -116343415 + MER91A DNA MER1_type 62 196 0 23 33 0 0 chr12 27939166 27939196 -116343293 + AT_rich Low_complexity Low_complexity 1 30 0 226 238 57 9 chr12 27940463 27940568 -116341921 + L1M4 LINE L1 4300 4409 -1737 1665 161 6 74 chr12 27940754 27941077 -116341412 + AluJb SINE Alu 1 301 -11 433 281 92 69 chr12 27941130 27941490 -116340999 + L1M4 LINE L1 4672 5039 -1107 41442 44 3 1 chr12 27941491 27947627 -116334862 + L1PA4 LINE L1 3 6150 -5 26 0 0 0 chr12 27947627 27947653 -116334836 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr12 27947738 27947781 -116334708 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr12 27947923 27947958 -116334531 + AT_rich Low_complexity Low_complexity 1 35 0 1057 132 0 18 chr12 27948000 27948167 -116334322 - AluJb SINE Alu -14 298 135 1379 163 4 9 chr12 27948208 27948441 -116334048 + AluJo SINE Alu 1 232 -80 2107 192 12 23 chr12 27948449 27949038 -116333451 - L1M LINE L1 -743 5403 4840 3560 230 70 28 chr12 27949458 27949572 -116332917 + L1M2 LINE L1 2533 2641 -4924 189 0 0 0 chr12 27949572 27949593 -116332896 + (CA)n Simple_repeat Simple_repeat 2 22 0 3560 230 70 28 chr12 27949593 27950763 -116331726 + L1M2 LINE L1 2641 3887 -3678 864 184 35 29 chr12 27950763 27950937 -116331552 + FAM SINE Alu 1 175 0 3560 230 70 28 chr12 27950937 27951784 -116330705 + L1M2 LINE L1 3887 4697 -2868 1566 222 19 26 chr12 27951792 27952220 -116330269 + L1MA9 LINE L1 5839 6263 -49 861 265 56 20 chr12 27952971 27953220 -116329269 + MIR SINE MIR 5 262 0 1535 183 20 23 chr12 27953553 27953853 -116328636 + AluJo SINE Alu 1 299 -13 280 299 204 25 chr12 27954331 27954532 -116327957 + MIR SINE MIR 18 254 -8 2328 104 0 0 chr12 27954589 27954897 -116327592 + AluY SINE Alu 1 308 -3 1822 160 16 29 chr12 27955196 27955509 -116326980 + AluJo SINE Alu 1 309 -3 2081 128 0 10 chr12 27955575 27955871 -116326618 + AluSg SINE Alu 1 293 -17 2483 172 10 5 chr12 27956105 27956495 -116325994 - MSTD LTR MaLR 0 396 5 369 43 0 0 chr12 27956901 27956948 -116325541 + (CA)n Simple_repeat Simple_repeat 1 47 0 1135 89 0 20 chr12 27958153 27958299 -116324190 + AluSx SINE Alu 1 143 -169 457 145 40 0 chr12 27958299 27958375 -116324114 - MSTD LTR MaLR -224 172 94 1124 131 0 0 chr12 27958375 27958528 -116323961 + AluSx SINE Alu 148 300 -12 2469 64 10 10 chr12 27960206 27960517 -116321972 - AluY SINE Alu 0 311 1 452 253 198 0 chr12 27960561 27960723 -116321766 + MIR3 SINE MIR 9 202 -6 1807 134 55 0 chr12 27960759 27961066 -116321423 + MER33 DNA MER1_type 1 324 0 24 77 0 0 chr12 27962110 27962162 -116320327 + AT_rich Low_complexity Low_complexity 1 52 0 367 181 84 0 chr12 27962298 27962381 -116320108 - MLT1J2 LTR MaLR -9 441 352 449 329 48 29 chr12 27962432 27962639 -116319850 - MLT1K LTR MaLR -158 430 220 261 307 150 41 chr12 27963042 27963335 -116319154 - L2 LINE L2 -741 2573 2249 352 258 67 8 chr12 27963343 27963463 -116319026 + MIR SINE MIR 102 228 -34 213 286 117 0 chr12 27963873 27963950 -116318539 - L2 LINE L2 -49 3223 3138 1078 180 16 16 chr12 27964101 27964290 -116318199 - MER5A DNA MER1_type 0 189 1 2435 212 66 50 chr12 27964622 27965287 -116317202 - LTR8 LTR ERV1 0 691 16 198 0 0 0 chr12 27965707 27965729 -116316760 + (T)n Simple_repeat Simple_repeat 1 22 0 639 230 84 34 chr12 27966325 27966528 -116315961 + MIR SINE MIR 51 262 0 1532 147 0 32 chr12 27966706 27966958 -116315531 + AluJb SINE Alu 1 244 -68 366 187 143 77 chr12 27967944 27968153 -116314336 - L1ME4a LINE L1 0 6121 5899 293 277 98 54 chr12 27968174 27968358 -116314131 - HAL1 LINE L1 -12 2495 2304 311 341 18 24 chr12 27968390 27968554 -116313935 - L1ME4a LINE L1 -342 5779 5617 676 253 77 21 chr12 27969420 27969653 -116312836 - MIR SINE MIR 0 262 17 4000 157 82 46 chr12 27969744 27969778 -116312711 - L1MB2 LINE L1 -4 6167 6136 1897 118 57 7 chr12 27969778 27970057 -116312432 - AluSx SINE Alu -19 293 1 4000 157 82 46 chr12 27970057 27971064 -116311425 - L1MB2 LINE L1 -35 6136 5100 491 257 9 0 chr12 27971378 27971487 -116311002 - MER117 DNA MER1_type -82 115 6 227 243 84 28 chr12 27971568 27971675 -116310814 - MER103 DNA DNA -52 114 2 279 0 0 0 chr12 27972255 27972286 -116310203 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr12 27972368 27972399 -116310090 + AT_rich Low_complexity Low_complexity 1 31 0 529 158 0 0 chr12 27972659 27972741 -116309748 - AluSg/x SINE Alu -23 287 206 892 246 33 0 chr12 27972907 27973090 -116309399 + MER5A DNA MER1_type 1 189 0 1078 129 0 148 chr12 27973879 27974135 -116308354 - MER20 DNA MER1_type 0 219 2 189 0 0 0 chr12 27974262 27974283 -116308206 + (TC)n Simple_repeat Simple_repeat 1 21 0 244 364 40 35 chr12 27974304 27974532 -116307957 + L2 LINE L2 964 1192 -2122 2212 159 16 16 chr12 27974629 27974994 -116307495 - MLT1A1 LTR MaLR 0 365 1 229 82 41 20 chr12 27975261 27975310 -116307179 + A-rich Low_complexity Low_complexity 5 54 0 1079 178 0 0 chr12 27975862 27976025 -116306464 + FRAM SINE Alu 1 163 -3 214 195 0 0 chr12 27976286 27976327 -116306162 + T-rich Low_complexity Low_complexity 1 41 0 1028 325 188 12 chr12 27976465 27977354 -116305135 + L2 LINE L2 1456 2500 -814 3837 183 30 26 chr12 27977450 27979715 -116302774 + L1MA4 LINE L1 6 2260 -4222 2045 142 3 7 chr12 27979715 27980018 -116302471 + AluJb SINE Alu 1 302 -10 3837 183 30 26 chr12 27980018 27981349 -116301140 + L1MA4 LINE L1 2260 3584 -2898 1601 162 22 67 chr12 27981349 27981663 -116300826 - AluJb SINE Alu -12 300 1 3837 183 30 26 chr12 27981663 27983943 -116298546 + L1MA4 LINE L1 3584 6185 -297 363 171 57 0 chr12 27983956 27984044 -116298445 + L1MB3 LINE L1 6087 6179 -4 832 158 73 0 chr12 27984050 27984215 -116298274 - MER53 DNA DNA -12 177 1 1146 185 56 85 chr12 27984457 27984633 -116297856 - MLT1A2 LTR MaLR 0 432 252 2283 126 0 0 chr12 27984633 27984943 -116297546 - AluSg SINE Alu 0 310 1 1146 185 56 85 chr12 27984943 27985227 -116297262 - MLT1A2 LTR MaLR -180 252 1 278 184 20 0 chr12 27985320 27985369 -116297120 + MER110 LTR ERV1 354 403 -88 1048 193 11 0 chr12 27985476 27985663 -116296826 - MER5A DNA MER1_type 0 189 1 321 202 26 114 chr12 27985663 27985777 -116296712 - MER5B DNA MER1_type -74 104 1 339 313 53 34 chr12 27985788 27985996 -116296493 + L2 LINE L2 2672 2883 -431 488 187 140 57 chr12 27986147 27986217 -116296272 + MER5A DNA MER1_type 4 67 -122 1675 126 112 4 chr12 27986217 27986486 -116296003 + AluJb SINE Alu 1 298 -14 488 187 140 57 chr12 27986486 27986584 -116295905 + MER5A DNA MER1_type 67 189 0 408 320 96 32 chr12 27986586 27986836 -116295653 + L2 LINE L2 3007 3272 0 424 299 65 23 chr12 27986849 27987076 -116295413 + MIR SINE MIR 16 248 -14 700 222 0 0 chr12 27989889 27990015 -116292474 + MER82 DNA MER2_type 1 126 -527 1062 223 100 4 chr12 27990165 27990394 -116292095 + MER82 DNA MER2_type 116 366 -287 499 256 70 35 chr12 27990365 27990537 -116291952 + MER82 DNA MER2_type 470 647 -6 * 382 202 18 44 chr12 27990917 27990961 -116291528 - L1MA4A LINE L1 -2 6301 6258 1089 149 25 45 chr12 27990961 27991234 -116291255 - L1PB4 LINE L1 -26 6130 5683 1621 218 7 0 chr12 27991234 27991528 -116290961 - AluJo SINE Alu -16 296 1 1089 149 25 45 chr12 27991528 27991612 -116290877 - L1PB4 LINE L1 -473 5683 5599 344 218 90 58 chr12 27992566 27992722 -116289767 - L1ME4a LINE L1 0 6121 5961 1790 169 4 0 chr12 27992746 27993025 -116289464 - AluJb SINE Alu -32 280 1 3085 60 0 3 chr12 27993317 27993681 -116288808 - L1PA7 LINE L1 0 6154 5792 253 276 126 0 chr12 27993682 27993769 -116288720 - L1ME4a LINE L1 -293 5828 5731 383 271 103 19 chr12 27994068 27994223 -116288266 - L1ME4a LINE L1 -391 5730 5563 325 216 52 169 chr12 27994323 27994670 -116287819 + L1ME4a LINE L1 5618 5881 -240 2179 103 3 19 chr12 27994670 27994981 -116287508 + AluSp SINE Alu 1 306 -7 325 216 52 169 chr12 27994981 27995170 -116287319 + L1ME4a LINE L1 5881 6091 -30 845 147 0 0 chr12 27995209 27995325 -116287164 - FLAM_A SINE Alu -17 116 1 2158 124 14 65 chr12 27995501 27995856 -116286633 + MER1B DNA MER1_type 1 337 0 803 206 116 0 chr12 27995963 27996118 -116286371 + MER45A DNA AcHobo 6 178 0 258 286 0 0 chr12 27996159 27996222 -116286267 - MIR SINE MIR -50 212 150 28 0 0 0 chr12 27996917 27996945 -116285544 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 27997064 27997096 -116285393 + AT_rich Low_complexity Low_complexity 1 32 0 838 259 123 45 chr12 27997275 27997345 -116285144 - MLT1J LTR MaLR -25 486 423 2369 80 0 7 chr12 27997345 27997647 -116284842 + AluSx SINE Alu 1 300 -12 2547 63 0 0 chr12 27997647 27997948 -116284541 + AluY SINE Alu 1 301 -10 2730 116 9 35 chr12 27997958 27998380 -116284109 + L1PA15 LINE L1 5754 6164 -1 838 259 123 45 chr12 27998380 27998737 -116283752 - MLT1J LTR MaLR -96 415 13 23 33 0 0 chr12 27998786 27998816 -116283673 + AT_rich Low_complexity Low_complexity 1 30 0 512 276 37 0 chr12 27998852 27998986 -116283503 + MIR SINE MIR 98 236 -26 2776 110 28 25 chr12 27998991 27999428 -116283061 - Tigger2 DNA MER2_type -1 2717 2280 395 174 0 0 chr12 27999426 27999495 -116282994 - Tigger2 DNA MER2_type -2649 69 1 * 944 114 25 32 chr12 27999787 27999945 -116282544 + MER2 DNA MER2_type 53 209 -136 2146 108 21 0 chr12 27999998 28000286 -116282203 - L1PA15 LINE L1 -7 6158 5865 277 331 41 8 chr12 28001274 28001395 -116281094 - MIR SINE MIR -43 219 95 2325 102 0 6 chr12 28001991 28002306 -116280183 - AluSq SINE Alu 0 313 1 2114 128 0 26 chr12 28003166 28003479 -116279010 + AluJb SINE Alu 1 305 -7 2490 69 0 25 chr12 28003481 28003798 -116278691 + AluY SINE Alu 3 311 0 203 238 0 0 chr12 28003884 28003926 -116278563 + MIR SINE MIR 15 56 -206 423 295 132 26 chr12 28004378 28004605 -116277884 - MIR SINE MIR -9 253 3 2149 105 34 0 chr12 28004879 28005175 -116277314 + AluSx SINE Alu 1 306 -6 345 246 164 82 chr12 28006129 28006300 -116276189 - MER5A DNA MER1_type -1 188 4 439 268 23 91 chr12 28006439 28006659 -116275830 + MIR SINE MIR 37 241 -21 280 321 105 19 chr12 28006789 28006951 -116275538 - MIR SINE MIR -74 188 13 1187 224 5 0 chr12 28007012 28007231 -116275258 - MER58A DNA MER1_type 0 224 5 838 148 31 0 chr12 28007289 28007417 -116275072 - MER3 DNA MER1_type -77 132 1 354 333 65 25 chr12 28007472 28007635 -116274854 + MIR SINE MIR 43 212 -50 575 270 36 16 chr12 28008627 28008875 -116273614 + L1ME LINE L1 5523 5775 -346 1173 282 48 27 chr12 28010365 28010925 -116271564 + L1MC4a LINE L1 5320 5891 -1917 410 242 51 80 chr12 28012055 28012312 -116270177 - MLT1C LTR MaLR -198 269 18 590 268 88 26 chr12 28012845 28013233 -116269256 - L1MC4 LINE L1 -91 7951 7540 25 51 0 0 chr12 28014070 28014109 -116268380 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 28014428 28014449 -116268040 + AT_rich Low_complexity Low_complexity 1 21 0 267 185 31 15 chr12 28014569 28014634 -116267855 - L1M LINE L1 -972 5372 5307 8755 205 38 9 chr12 28014644 28017671 -116264818 - L1 LINE L1 -3036 4172 1054 788 294 115 23 chr12 28017671 28018192 -116264297 - L1M2b LINE L1 -5587 1622 1054 1963 153 9 168 chr12 28018192 28018294 -116264195 - MLT2B3 LTR ERVL 0 554 437 2676 96 3 8 chr12 28018294 28018660 -116263829 + THE1B LTR MaLR 1 364 0 1963 153 9 168 chr12 28018660 28019216 -116263273 - MLT2B3 LTR ERVL -117 437 1 2526 153 16 19 chr12 28019243 28019668 -116262821 + MSTB LTR MaLR 3 426 0 2122 167 146 0 chr12 28019689 28020155 -116262334 - L1M2b LINE L1 -6494 715 182 1665 250 32 66 chr12 28020154 28021018 -116261471 - L1MEc LINE L1 -2432 3783 2949 * 1985 130 3 23 chr12 28021043 28021342 -116261147 - AluSx SINE Alu -19 293 1 1751 219 17 33 chr12 28021343 28021476 -116261013 - L1MEc LINE L1 -3252 2963 2829 1919 158 14 0 chr12 28021476 28021768 -116260721 - AluJb SINE Alu -16 296 1 1751 219 17 33 chr12 28021768 28022154 -116260335 - L1MEc LINE L1 -3386 2829 2452 1775 160 7 23 chr12 28022155 28022462 -116260027 - AluJo SINE Alu -6 306 5 3850 271 55 49 chr12 28022512 28022850 -116259639 - L1MEc LINE L1 -4352 2044 1710 2050 99 56 0 chr12 28022850 28023134 -116259355 + AluSx SINE Alu 1 300 -12 3850 271 55 49 chr12 28023134 28023400 -116259089 - L1MEc LINE L1 -4686 1710 1447 1693 93 0 0 chr12 28023400 28023605 -116258884 + AluSc SINE Alu 88 292 -17 3850 271 55 49 chr12 28023605 28024165 -116258324 - L1MEc LINE L1 -4949 1447 892 2135 106 22 26 chr12 28024165 28024477 -116258012 - AluSx SINE Alu -1 311 1 3850 271 55 49 chr12 28024477 28025306 -116257183 - L1MEc LINE L1 -5504 892 37 392 350 0 8 chr12 28025366 28025489 -116257000 + L2 LINE L2 3189 3310 -3 4084 212 41 24 chr12 28025636 28026955 -116255534 - L1MD2 LINE L1 -2 6357 5015 2274 123 0 0 chr12 28027781 28028082 -116254407 - AluSx SINE Alu -11 301 1 1713 206 34 30 chr12 28028825 28029279 -116253210 + L1ME1 LINE L1 5722 6334 0 1717 155 0 27 chr12 28029381 28029677 -116252812 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr12 28029852 28029873 -116252616 + AT_rich Low_complexity Low_complexity 1 21 0 188 239 131 77 chr12 28030293 28030423 -116252066 + L2 LINE L2 3173 3309 -4 1906 132 10 20 chr12 28030441 28030737 -116251752 - AluSx SINE Alu -17 295 3 327 309 115 26 chr12 28030782 28030973 -116251516 - L1ME4a LINE L1 -79 6042 5835 902 109 0 0 chr12 28031146 28031265 -116251224 + AluJb SINE Alu 1 119 -193 5791 78 5 2 chr12 28031265 28032078 -116250411 + L1PA14 LINE L1 5347 6161 0 1226 162 5 5 chr12 28032084 28032275 -116250214 + AluJb SINE Alu 104 294 -18 2159 87 0 16 chr12 28033196 28033541 -116248948 - L1PA7 LINE L1 0 6154 5851 193 301 0 41 chr12 28033677 28033750 -116248739 + L2 LINE L2 3000 3069 -244 227 288 163 38 chr12 28033930 28034114 -116248375 + L2 LINE L2 3106 3312 -1 293 261 9 0 chr12 28035041 28035152 -116247337 + (TA)n Simple_repeat Simple_repeat 1 112 0 287 118 0 73 chr12 28035434 28035502 -116246987 - L1M LINE L1 -836 5338 5276 1640 168 41 14 chr12 28036325 28036617 -116245872 + AluJb SINE Alu 1 300 -12 4393 166 18 20 chr12 28037573 28038466 -116244023 + L1MB7 LINE L1 5272 6162 -22 21 82 0 0 chr12 28038872 28038921 -116243568 + AT_rich Low_complexity Low_complexity 1 49 0 2608 49 0 0 chr12 28040002 28040310 -116242179 + AluY SINE Alu 1 308 -3 227 328 46 38 chr12 28040597 28040728 -116241761 - MIR3 SINE MIR -17 191 60 332 134 30 30 chr12 28041652 28041719 -116240770 + LTR67 LTR ERVL 491 557 0 28 29 0 0 chr12 28041788 28041823 -116240666 + AT_rich Low_complexity Low_complexity 1 35 0 264 294 50 59 chr12 28042305 28042403 -116240086 - MER5B DNA MER1_type -15 163 65 2353 84 3 0 chr12 28042403 28042700 -116239789 - AluSq SINE Alu -15 298 1 264 294 50 59 chr12 28042700 28042720 -116239769 - MER5B DNA MER1_type -113 65 46 281 330 24 30 chr12 28043255 28043427 -116239062 - MER5A DNA MER1_type -1 188 6 603 294 37 9 chr12 28044551 28044765 -116237724 + LTR16A LTR ERVL 225 444 -6 924 109 45 9 chr12 28044773 28045038 -116237451 - MER89 LTR ERV1 0 559 240 232 194 129 0 chr12 28045050 28045112 -116237377 + MIR SINE MIR 123 192 -70 1383 263 101 30 chr12 28045274 28045818 -116236671 + L2 LINE L2 2447 3036 -277 3310 164 46 5 chr12 28045818 28046469 -116236020 + L1MB7 LINE L1 5465 6142 -42 467 234 86 76 chr12 28046469 28046666 -116235823 + L2 LINE L2 3023 3221 -92 761 264 42 19 chr12 28046878 28047090 -116235399 - MIR SINE MIR -26 236 20 366 341 41 8 chr12 28047105 28047228 -116235261 + L2 LINE L2 3140 3266 -6 959 200 0 0 chr12 28047230 28047400 -116235089 + FRAM SINE Alu 1 169 -7 524 241 35 0 chr12 28047929 28048070 -116234419 - MLT1L LTR MaLR -5 610 465 1465 175 0 105 chr12 28048463 28048795 -116233694 - AluJb SINE Alu -4 298 2 416 204 76 23 chr12 28048840 28048972 -116233517 - L1MC4 LINE L1 -27 8015 7877 186 43 0 0 chr12 28048985 28049008 -116233481 + (TC)n Simple_repeat Simple_repeat 2 24 0 1111 123 39 0 chr12 28049008 28049162 -116233327 - AluJb SINE Alu -23 289 130 216 212 0 0 chr12 28049163 28049229 -116233260 + T-rich Low_complexity Low_complexity 1 66 0 1720 231 36 10 chr12 28049270 28049772 -116232717 - L1MC4 LINE L1 -197 7845 7331 325 276 133 8 chr12 28049921 28050081 -116232408 - MIR3 SINE MIR -64 144 7 229 254 16 131 chr12 28050591 28050713 -116231776 + MIR SINE MIR 25 132 -76 573 114 86 0 chr12 28050824 28050929 -116231560 + MLT1B LTR MaLR 2 115 -275 30 59 0 0 chr12 28050929 28050980 -116231509 + AT_rich Low_complexity Low_complexity 1 51 0 828 183 17 23 chr12 28051754 28051996 -116230493 + MLT1B LTR MaLR 95 390 0 469 184 9 79 chr12 28051998 28052029 -116230460 + MIR SINE MIR 87 119 -143 801 224 35 11 chr12 28052029 28052203 -116230286 - MER45A DNA AcHobo 0 178 1 469 184 9 79 chr12 28052203 28052285 -116230204 + MIR SINE MIR 119 192 -70 1939 160 32 8 chr12 28053155 28053531 -116228958 + LTR45B LTR ERV1 1 385 -104 2165 81 34 30 chr12 28053796 28054094 -116228395 - AluSg SINE Alu -11 299 1 22 35 0 0 chr12 28054347 28054376 -116228113 + AT_rich Low_complexity Low_complexity 1 29 0 495 217 96 0 chr12 28054843 28054958 -116227531 + MIR SINE MIR 23 148 -114 1348 112 8 97 chr12 28054994 28055253 -116227236 - MER46A DNA MER2_type 0 236 1 184 286 95 0 chr12 28055906 28055969 -116226520 - MIR SINE MIR -115 147 79 2186 111 3 3 chr12 28056190 28056487 -116226002 + AluSg SINE Alu 1 297 -13 21 0 0 0 chr12 28057510 28057531 -116224958 + AT_rich Low_complexity Low_complexity 1 21 0 235 355 0 11 chr12 28058274 28058367 -116224122 - MIR SINE MIR -14 248 157 368 234 157 49 chr12 28058826 28058988 -116223501 + MIR SINE MIR 18 192 -64 428 321 64 9 chr12 28059006 28059056 -116223433 + L3 LINE CR1 1331 1377 -200 2307 69 3 20 chr12 28059056 28059359 -116223130 - AluSp SINE Alu -15 298 1 428 321 64 9 chr12 28059359 28059526 -116222963 + L3 LINE CR1 1377 1560 -17 490 225 38 41 chr12 28060752 28060909 -116221580 - MIR SINE MIR -62 146 30 325 306 113 31 chr12 28061445 28061605 -116220884 + MIR SINE MIR 20 192 -70 2041 119 17 3 chr12 28061689 28061991 -116220498 + AluSx SINE Alu 1 306 -6 26 30 0 0 chr12 28062928 28062961 -116219528 + GC_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr12 28064382 28064406 -116218083 + (A)n Simple_repeat Simple_repeat 1 24 0 2288 101 3 7 chr12 28065418 28065726 -116216763 + AluSq SINE Alu 1 307 -6 1802 153 23 7 chr12 28066110 28066410 -116216079 - AluJb SINE Alu -7 305 1 2055 128 0 0 chr12 28066804 28067113 -116215376 - AluSx SINE Alu 0 311 3 2255 102 0 0 chr12 28068278 28068563 -116213926 + AluSx SINE Alu 1 285 -27 662 251 134 73 chr12 28069440 28069918 -116212571 + MLT1J LTR MaLR 1 507 -4 548 266 32 13 chr12 28069991 28070149 -116212340 + MIR SINE MIR 28 188 -74 1972 117 7 30 chr12 28070170 28070468 -116212021 - AluSx SINE Alu -21 291 1 433 217 286 32 chr12 28070771 28070960 -116211529 + MIR SINE MIR 5 241 -21 917 169 91 0 chr12 28071876 28072030 -116210459 - FAM SINE Alu -7 168 1 648 232 173 36 chr12 28072186 28072406 -116210083 - MIR SINE MIR 0 262 13 387 309 99 20 chr12 28072477 28072729 -116209760 - L2 LINE L2 -997 2317 2046 4590 173 59 73 chr12 28073957 28074243 -116208246 - MER45B DNA AcHobo -543 1038 750 1525 180 56 0 chr12 28074243 28074550 -116207939 - AluJb SINE Alu 0 324 3 4590 173 59 73 chr12 28074550 28075129 -116207360 - MER45B DNA AcHobo -831 750 186 2552 131 46 10 chr12 28075129 28075540 -116206949 - MSTB LTR MaLR 0 426 1 4590 173 59 73 chr12 28075540 28075715 -116206774 - MER45B DNA AcHobo -1395 186 10 2280 89 0 3 chr12 28075993 28076284 -116206205 - AluSg SINE Alu -20 290 1 321 175 188 0 chr12 28077286 28077366 -116205123 - MIR SINE MIR -49 213 119 197 235 0 20 chr12 28077467 28077518 -116204971 + L2 LINE L2 3261 3310 -3 207 297 0 69 chr12 28077679 28077723 -116204766 + MIR SINE MIR 127 172 -90 1193 187 9 9 chr12 28077723 28077942 -116204547 + MER20 DNA MER1_type 1 219 0 207 297 0 69 chr12 28077942 28077998 -116204491 + MIR SINE MIR 172 220 -42 354 285 38 32 chr12 28078558 28078716 -116203773 - L1ME4a LINE L1 -1 6120 5962 1102 150 39 0 chr12 28078918 28079098 -116203391 - AluJo SINE Alu -14 298 112 262 191 0 0 chr12 28079098 28079140 -116203349 + MER20 DNA MER1_type 178 219 0 333 203 100 0 chr12 28079325 28079397 -116203092 - AluJ/FLAM SINE Alu -236 66 1 334 279 123 54 chr12 28079641 28079917 -116202572 - L1M4 LINE L1 -746 5400 5106 439 312 69 37 chr12 28080801 28080941 -116201548 + MIR SINE MIR 29 163 -99 1281 162 162 55 chr12 28080941 28081250 -116201239 - MER2 DNA MER2_type -2 342 1 439 312 69 37 chr12 28081250 28081269 -116201220 + MIR SINE MIR 163 180 -82 541 105 13 0 chr12 28081269 28081345 -116201144 + MADE1 DNA Mariner 3 79 -1 439 312 69 37 chr12 28081345 28081373 -116201116 + MIR SINE MIR 180 223 -39 1899 168 3 7 chr12 28082734 28083031 -116199458 - AluJo SINE Alu -12 300 5 7555 48 11 1 chr12 28083180 28084247 -116198242 + L1PA7 LINE L1 5077 6152 -2 272 248 172 27 chr12 28085042 28085226 -116197263 + MIR SINE MIR 2 216 -46 1822 139 45 7 chr12 28085584 28085871 -116196618 + AluJb SINE Alu 1 298 -14 824 255 153 25 chr12 28086371 28086775 -116195714 - LTR16A1 LTR ERVL -1 456 1 187 283 0 0 chr12 28088813 28088859 -116193630 + MIR SINE MIR 12 57 -205 199 156 0 0 chr12 28089447 28089479 -116193010 - MIR SINE MIR -150 112 81 227 174 0 65 chr12 28089506 28089552 -116192937 - HsTC2 DNA Tc2 -1816 82 40 190 311 0 16 chr12 28089576 28089637 -116192852 - MIR SINE MIR -183 79 20 35 0 0 0 chr12 28089825 28089860 -116192629 + AT_rich Low_complexity Low_complexity 1 35 0 305 248 78 78 chr12 28089873 28090026 -116192463 - MIR SINE MIR -96 166 14 314 256 35 12 chr12 28090850 28090936 -116191553 + MIR3 SINE MIR 113 200 -8 2696 106 132 2 chr12 28091538 28091964 -116190525 - MER31A LTR ERV1 -1 484 4 202 143 29 0 chr12 28092523 28092558 -116189931 + MER91B DNA MER1_type 32 67 -123 827 311 112 49 chr12 28093280 28093872 -116188617 + L3 LINE CR1 694 1322 -255 2165 88 17 10 chr12 28096092 28096386 -116186103 - AluY SINE Alu -15 296 1 273 29 0 0 chr12 28097111 28097145 -116185344 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 252 0 0 0 chr12 28097321 28097349 -116185140 + (CA)n Simple_repeat Simple_repeat 2 29 0 324 48 0 0 chr12 28097450 28097492 -116184997 + (CA)n Simple_repeat Simple_repeat 2 43 0 1567 175 25 41 chr12 28097707 28098021 -116184468 - AluJo SINE Alu -3 309 1 2220 87 10 0 chr12 28098032 28098320 -116184169 - AluSg SINE Alu -19 291 1 351 286 193 33 chr12 28099439 28099652 -116182837 - MIR SINE MIR -7 255 9 642 283 45 18 chr12 28100380 28100662 -116181827 + L2 LINE L2 2720 3011 -302 1097 160 15 39 chr12 28100697 28100903 -116181586 + AluJo SINE Alu 84 284 -28 504 225 190 20 chr12 28100935 28101135 -116181354 + L2 LINE L2 3079 3312 -1 357 283 126 40 chr12 28101535 28101733 -116180756 + MIR SINE MIR 20 234 -28 533 204 26 86 chr12 28101850 28102002 -116180487 + MLT1E3 LTR MaLR 62 204 -420 1381 148 0 62 chr12 28102013 28102269 -116180220 + AluY SINE Alu 1 240 -71 398 244 67 28 chr12 28102457 28102637 -116179852 - L1ME4a LINE L1 -11 6110 5924 295 292 0 0 chr12 28103026 28103098 -116179391 + (CA)n Simple_repeat Simple_repeat 1 72 0 2081 92 7 14 chr12 28103366 28103659 -116178830 + AluY SINE Alu 1 291 -20 2032 78 7 11 chr12 28104148 28104417 -116178072 - AluY SINE Alu 0 311 44 302 264 23 62 chr12 28104489 28104618 -116177871 + L1ME4a LINE L1 5984 6107 -14 388 320 20 20 chr12 28104629 28104776 -116177713 + MIR SINE MIR 8 154 -108 2158 108 0 16 chr12 28105230 28105536 -116176953 + AluSg SINE Alu 1 301 -9 330 224 95 34 chr12 28105740 28105887 -116176602 + Charlie7 DNA MER1_type 2457 2612 0 2447 76 0 3 chr12 28107112 28107414 -116175075 - AluSg SINE Alu -9 301 1 654 248 139 18 chr12 28108411 28108685 -116173804 - MER102b DNA MER1_type 0 341 35 681 245 92 15 chr12 28109897 28110093 -116172396 - MIR SINE MIR -42 220 10 1143 244 59 60 chr12 28110381 28110927 -116171562 + L1MC5 LINE L1 7373 7917 -44 263 246 56 0 chr12 28111627 28111711 -116170778 + MIR SINE MIR 100 186 -22 1670 168 56 7 chr12 28112137 28112423 -116170066 - AluJo SINE Alu -12 300 1 237 132 0 0 chr12 28113193 28113231 -116169258 + (TG)n Simple_repeat Simple_repeat 1 38 0 2274 234 66 20 chr12 28115181 28115774 -116166715 + MER82 DNA MER2_type 1 620 -33 202 216 78 0 chr12 28116345 28116396 -116166093 + L2 LINE L2 3218 3272 0 194 314 0 47 chr12 28116736 28116822 -116165667 - L2 LINE L2 -5 3308 3227 257 366 81 14 chr12 28118975 28119196 -116163293 - L2 LINE L2 -337 2977 2742 1587 179 19 35 chr12 28119229 28119542 -116162947 + AluJo SINE Alu 4 311 -1 670 270 73 65 chr12 28120228 28120476 -116162013 + MIR SINE MIR 2 251 -11 1062 181 15 20 chr12 28120615 28120814 -116161675 - MER58A DNA MER1_type 0 224 27 23 0 0 0 chr12 28122738 28122761 -116159728 + AT_rich Low_complexity Low_complexity 1 23 0 245 200 0 0 chr12 28123320 28123365 -116159124 - L2 LINE L2 0 3313 3269 262 202 12 36 chr12 28123452 28123536 -116158953 + GA-rich Low_complexity Low_complexity 4 85 0 220 222 0 0 chr12 28124233 28124278 -116158211 - MIR SINE MIR 0 262 218 206 355 138 0 chr12 28124319 28124471 -116158018 - MIR SINE MIR -19 243 71 248 373 42 7 chr12 28124675 28124817 -116157672 + MIR3 SINE MIR 35 181 -27 678 256 37 0 chr12 28124974 28125138 -116157351 - MIR SINE MIR -77 185 16 1823 171 7 0 chr12 28125293 28125586 -116156903 + AluSx SINE Alu 1 295 -17 2568 43 0 7 chr12 28126216 28126520 -116155969 + AluY SINE Alu 1 302 -9 398 208 133 17 chr12 28126596 28126716 -116155773 - L1MC4 LINE L1 -91 7951 7818 931 261 104 63 chr12 28126773 28127264 -116155225 - L1MC4 LINE L1 -364 7678 7168 590 161 0 0 chr12 28128233 28128320 -116154169 - AluJ/FLAM SINE Alu -224 88 2 234 339 101 77 chr12 28129026 28129048 -116153441 - L2 LINE L2 -20 3252 3232 2132 128 0 0 chr12 28129048 28129352 -116153137 - AluSx SINE Alu -8 304 1 234 339 101 77 chr12 28129352 28129615 -116152874 - L2 LINE L2 -40 3232 2960 210 327 18 18 chr12 28130231 28130341 -116152148 - L2 LINE L2 -2959 355 246 386 246 65 29 chr12 28130520 28130658 -116151831 - MIR SINE MIR -50 212 70 2012 116 41 3 chr12 28131734 28132027 -116150462 + AluSq SINE Alu 1 304 -9 180 111 0 0 chr12 28132957 28132984 -116149505 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2385 110 0 0 chr12 28133044 28133354 -116149135 - AluSx SINE Alu -2 310 1 398 244 67 28 chr12 28133540 28133720 -116148769 - L1ME4a LINE L1 -11 6110 5924 240 300 135 20 chr12 28133829 28134029 -116148460 - L1ME4a LINE L1 -362 5759 5537 204 278 0 0 chr12 28134109 28134181 -116148308 + (CA)n Simple_repeat Simple_repeat 1 72 0 2242 75 4 0 chr12 28134449 28134727 -116147762 + AluSp SINE Alu 1 279 -34 297 0 0 0 chr12 28134729 28134762 -116147727 + (CAA)n Simple_repeat Simple_repeat 1 33 0 324 0 0 0 chr12 28134763 28134799 -116147690 + (TA)n Simple_repeat Simple_repeat 2 37 0 333 0 0 0 chr12 28134948 28134985 -116147504 + (CA)n Simple_repeat Simple_repeat 2 38 0 191 35 0 35 chr12 28135378 28135407 -116147082 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 974 174 26 0 chr12 28135410 28135565 -116146924 - FRAM SINE Alu -24 152 1 707 274 24 59 chr12 28135567 28135822 -116146667 - MIR SINE MIR -8 254 9 2191 63 44 0 chr12 28136029 28136330 -116146159 - AluSg SINE Alu 0 313 1 2040 119 3 3 chr12 28136661 28136981 -116145508 - AluSq SINE Alu 0 320 1 2746 96 14 16 chr12 28137032 28137396 -116145093 - THE1B LTR MaLR 0 364 2 351 0 0 0 chr12 28137415 28137454 -116145035 + (TG)n Simple_repeat Simple_repeat 2 40 0 1175 175 45 135 chr12 28137982 28138383 -116144106 + MLT2B1 LTR ERVL 1 365 -49 216 135 0 0 chr12 28138388 28138425 -116144064 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 261 198 5 0 chr12 28138446 28138507 -116143982 + MLT2B1 LTR ERVL 391 520 0 1831 229 61 2 chr12 28138562 28139021 -116143468 + L1MC4a LINE L1 7323 7808 0 2248 95 10 3 chr12 28139032 28139328 -116143161 + AluSq SINE Alu 1 298 -15 319 106 0 0 chr12 28139651 28139698 -116142791 + L1MB3 LINE L1 6099 6145 -38 1489 176 48 14 chr12 28139718 28140008 -116142481 - L1MA6 LINE L1 -2 6298 5999 848 201 85 0 chr12 28140755 28140944 -116141545 - MER3 DNA MER1_type -4 205 1 1312 143 76 4 chr12 28141150 28141388 -116141101 - L1MA9 LINE L1 -5 6307 6053 194 287 185 9 chr12 28142096 28142204 -116140285 + MIR SINE MIR 67 193 -69 214 125 25 25 chr12 28142407 28142447 -116140042 + L2 LINE L2 3138 3177 -95 24 32 0 0 chr12 28143200 28143231 -116139258 + AT_rich Low_complexity Low_complexity 1 31 0 2448 110 22 30 chr12 28143625 28143990 -116138499 - THE1B LTR MaLR 0 364 3 361 262 16 25 chr12 28144189 28144311 -116138178 + L1ME1 LINE L1 5935 6055 -111 502 186 242 63 chr12 28144311 28144563 -116137926 - MER33 DNA MER1_type 0 324 28 398 202 39 39 chr12 28144592 28144696 -116137793 + L1ME1 LINE L1 6061 6164 -2 213 325 278 0 chr12 28145422 28145573 -116136916 + L3 LINE CR1 691 883 -694 324 331 63 16 chr12 28145839 28145966 -116136523 - MER5A DNA MER1_type -50 139 7 1169 154 50 11 chr12 28146356 28146538 -116135951 - MER5A DNA MER1_type 0 189 1 197 0 71 0 chr12 28147755 28147783 -116134706 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 849 333 105 28 chr12 28148127 28148671 -116133818 + L2 LINE L2 2323 2908 -406 321 329 205 0 chr12 28148841 28149002 -116133487 - MER91A DNA MER1_type -1 195 2 22 0 0 0 chr12 28149118 28149140 -116133349 + AT_rich Low_complexity Low_complexity 1 22 0 1215 180 40 68 chr12 28150132 28150454 -116132035 - MLT1B LTR MaLR -77 313 1 297 0 0 0 chr12 28150662 28150695 -116131794 + (TC)n Simple_repeat Simple_repeat 1 33 0 1927 128 3 50 chr12 28151205 28151525 -116130964 - AluJb SINE Alu -7 305 1 468 0 0 0 chr12 28151803 28151855 -116130634 + (CAT)n Simple_repeat Simple_repeat 1 52 0 2309 102 3 0 chr12 28152301 28152604 -116129885 + AluSx SINE Alu 4 307 -5 1837 173 0 16 chr12 28152972 28153278 -116129211 + AluJb SINE Alu 1 301 -11 215 265 61 0 chr12 28154513 28154562 -116127927 - MIR3 SINE MIR -46 162 111 262 246 0 15 chr12 28154829 28154894 -116127595 + MIR SINE MIR 91 154 -108 216 244 0 0 chr12 28154954 28155021 -116127468 + polypyrimidine Low_complexity Low_complexity 1 67 0 219 357 18 40 chr12 28155660 28155887 -116126602 - L2 LINE L2 -1893 1421 1200 227 318 0 0 chr12 28156299 28156362 -116126127 + L2 LINE L2 3246 3308 -5 1322 177 3 5 chr12 28156365 28156659 -116125830 + MER2 DNA MER2_type 1 344 -1 3133 109 56 56 chr12 28157102 28157708 -116124781 + MER4B LTR ERV1 1 774 -5 1974 161 45 3 chr12 28158009 28158339 -116124150 + MER2 DNA MER2_type 1 344 0 277 241 241 9 chr12 28158480 28158588 -116123901 + L2 LINE L2 2405 2537 -777 533 205 41 8 chr12 28158592 28158714 -116123775 + L1ME2 LINE L1 6031 6156 -8 274 171 13 13 chr12 28158785 28158861 -116123628 + (TA)n Simple_repeat Simple_repeat 1 76 0 914 264 75 53 chr12 28158916 28159422 -116123067 + L2 LINE L2 2557 3068 -245 794 220 89 14 chr12 28159467 28159681 -116122808 + MIR SINE MIR 9 238 -24 542 216 16 135 chr12 28159699 28159944 -116122545 + L2 LINE L2 3098 3313 0 1190 182 98 0 chr12 28159997 28160200 -116122289 - MER58A DNA MER1_type -1 223 1 239 194 148 83 chr12 28161154 28161262 -116121227 - MER5C DNA MER1_type 0 324 210 389 259 93 9 chr12 28161289 28161397 -116121092 - MER5C DNA MER1_type -201 123 7 384 181 112 52 chr12 28161530 28161646 -116120843 + L2 LINE L2 3188 3310 -3 1730 174 0 29 chr12 28162294 28162610 -116119879 + AluJo SINE Alu 1 307 -5 1602 144 91 4 chr12 28163867 28164130 -116118359 + AluJb SINE Alu 3 288 -24 713 215 141 16 chr12 28164144 28164236 -116118253 - L1MC5 LINE L1 -73 7888 7809 186 43 0 0 chr12 28164236 28164259 -116118230 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 713 215 141 16 chr12 28164259 28164422 -116118067 - L1MC5 LINE L1 -152 7809 7601 2305 96 3 22 chr12 28164447 28164759 -116117730 - AluSx SINE Alu -6 306 1 564 161 0 21 chr12 28164778 28164871 -116117618 + FLAM_A SINE Alu 34 124 -18 577 212 7 73 chr12 28165338 28165446 -116117043 - MER5A DNA MER1_type -15 174 77 2230 112 3 0 chr12 28165446 28165741 -116116748 - AluSx SINE Alu -15 297 2 577 212 7 73 chr12 28165741 28165783 -116116706 - MER5A DNA MER1_type -112 77 34 1489 99 22 0 chr12 28165843 28166065 -116116424 - L1MA3 LINE L1 -3 6302 6076 1862 131 32 32 chr12 28167043 28167355 -116115134 - AluJo SINE Alu 0 312 1 513 298 169 11 chr12 28167655 28167934 -116114555 - LTR16C LTR ERVL -44 447 125 822 225 175 21 chr12 28168190 28168475 -116114014 - L1ME2 LINE L1 -52 6112 5784 347 245 66 13 chr12 28168800 28168951 -116113538 - L1MEc LINE L1 -3382 2833 2675 331 204 86 0 chr12 28168987 28169080 -116113409 + L1MEc LINE L1 2148 2248 -4148 745 242 110 11 chr12 28169120 28169483 -116113006 - L1MEc LINE L1 -3608 2607 2209 1223 124 77 0 chr12 28169512 28169721 -116112768 - L1PB3 LINE L1 -6 6148 5924 342 236 94 9 chr12 28169725 28169831 -116112658 - L1MEc LINE L1 -4134 2262 2148 371 211 0 22 chr12 28169843 28169933 -116112556 + FLAM_A SINE Alu 44 131 -2 229 285 73 33 chr12 28170234 28170385 -116112104 + L2 LINE L2 3048 3204 -109 213 259 96 7 chr12 28170394 28170530 -116111959 + MER5C DNA MER1_type 77 321 -3 337 289 144 30 chr12 28171493 28171694 -116110795 + MIR SINE MIR 35 258 -4 189 74 0 0 chr12 28171727 28171754 -116110735 + (TG)n Simple_repeat Simple_repeat 1 27 0 259 194 194 0 chr12 28172572 28172634 -116109855 - MER5A DNA MER1_type -114 75 2 2444 84 0 0 chr12 28172712 28173011 -116109478 - AluSg1 SINE Alu -10 299 1 823 173 45 67 chr12 28173023 28173202 -116109287 - FAM SINE Alu 0 175 1 207 330 65 45 chr12 28173223 28173423 -116109066 + L2 LINE L2 2252 2455 -859 764 81 130 0 chr12 28174502 28174625 -116107864 - MER85 DNA T2_type 0 139 1 1340 247 37 60 chr12 28175549 28176159 -116106330 + L2 LINE L2 2704 3311 -2 192 152 0 0 chr12 28176823 28176856 -116105633 + CT-rich Low_complexity Low_complexity 3 35 0 1360 153 16 4 chr12 28176865 28177119 -116105370 + L1MB3 LINE L1 5925 6181 -2 393 297 50 33 chr12 28177291 28177473 -116105016 + MIR SINE MIR 42 226 -36 1878 86 4 11 chr12 28180544 28180822 -116101667 + LTR17 LTR ERV1 51 326 -454 333 0 0 0 chr12 28180823 28180860 -116101629 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 194 184 0 26 chr12 28180957 28180995 -116101494 + L3 LINE CR1 1540 1576 -1 275 77 0 0 chr12 28181919 28181958 -116100531 + tRNA-Ile-ATT tRNA tRNA 1 39 -38 230 324 184 68 chr12 28182164 28182500 -116099989 - L2 LINE L2 0 3272 2898 1524 190 23 36 chr12 28182952 28183257 -116099232 - AluJo SINE Alu -11 301 1 892 167 0 0 chr12 28185282 28185414 -116097075 - FLAM_A SINE Alu -5 137 6 26 30 0 0 chr12 28185526 28185559 -116096930 + AT_rich Low_complexity Low_complexity 1 33 0 2209 102 7 0 chr12 28185876 28186171 -116096318 - AluSx SINE Alu -9 303 7 6476 97 22 2 chr12 28187009 28188011 -116094478 + L1MA2 LINE L1 5271 6297 -7 563 255 71 47 chr12 28188063 28188275 -116094214 + MIR SINE MIR 22 238 -24 2053 123 0 3 chr12 28188420 28188728 -116093761 - AluSx SINE Alu 0 307 1 200 130 22 0 chr12 28189031 28189077 -116093412 + CT-rich Low_complexity Low_complexity 2 48 0 220 186 34 17 chr12 28189641 28189700 -116092789 + MIR SINE MIR 57 116 -146 786 194 0 8 chr12 28190150 28190284 -116092205 - FLAM_C SINE Alu 0 133 1 2187 118 0 3 chr12 28192180 28192485 -116090004 + AluSx SINE Alu 1 304 -8 285 366 0 0 chr12 28196416 28196509 -116085980 + MIR3 SINE MIR 111 203 -5 1830 144 0 85 chr12 28196702 28197042 -116085447 + AluJo SINE Alu 1 311 -1 299 317 10 0 chr12 28197081 28197182 -116085307 + MER5C DNA MER1_type 4 105 -219 221 263 18 0 chr12 28197413 28197470 -116085019 - MIR3 SINE MIR -51 157 100 1282 128 0 62 chr12 28198253 28198464 -116084025 + AluJo SINE Alu 51 248 -64 478 149 23 23 chr12 28198464 28198551 -116083938 + AluJo/FRAM SINE Alu 210 296 -16 799 224 13 0 chr12 28198676 28198828 -116083661 + FRAM SINE Alu 2 155 -21 932 122 0 0 chr12 28198937 28199068 -116083421 - FLAM_C SINE Alu -2 131 1 187 343 90 22 chr12 28200950 28201084 -116081405 - L2 LINE L2 -180 3092 2950 415 327 155 29 chr12 28201262 28201675 -116080814 - L2 LINE L2 -585 2729 2265 489 220 54 119 chr12 28201833 28202169 -116080320 - MLT1H LTR MaLR -113 436 123 2066 142 3 0 chr12 28202435 28202737 -116079752 + AluJb SINE Alu 1 303 -9 224 226 0 0 chr12 28202898 28202951 -116079538 + T-rich Low_complexity Low_complexity 3 55 0 483 302 148 41 chr12 28203539 28203782 -116078707 - L2 LINE L2 -291 2981 2765 2077 120 0 0 chr12 28203782 28204073 -116078416 + AluSx SINE Alu 1 291 -21 483 302 148 41 chr12 28204073 28204415 -116078074 - L2 LINE L2 -507 2765 2317 305 214 136 39 chr12 28204963 28205117 -116077372 - L1ME4a LINE L1 -33 6088 5920 1454 240 172 6 chr12 28206495 28206978 -116075511 - MLT1G1 LTR MaLR -29 566 4 285 244 80 128 chr12 28206993 28207329 -116075160 - MLT1G1-int LTR MaLR -24 1347 1028 305 232 61 0 chr12 28207924 28208006 -116074483 - MLT1G1-int LTR MaLR -1194 541 455 1793 166 14 10 chr12 28209375 28209693 -116072796 + AluJo SINE Alu 2 320 0 231 254 75 75 chr12 28209735 28209869 -116072620 - MIR SINE MIR -82 180 47 743 197 8 0 chr12 28209899 28210031 -116072458 + FLAM_A SINE Alu 1 133 0 2123 141 3 0 chr12 28210666 28210965 -116071524 + AluSx SINE Alu 1 300 -12 1734 163 40 0 chr12 28213188 28213488 -116069001 + L1MB5 LINE L1 5853 6164 -10 1652 159 9 92 chr12 28213688 28214015 -116068474 - AluJo SINE Alu -9 303 4 1171 167 5 9 chr12 28214453 28214663 -116067826 + L1 LINE L1 4890 5098 -1048 2470 86 0 0 chr12 28217454 28217758 -116064731 + AluSg1 SINE Alu 1 304 -5 786 257 119 18 chr12 28219251 28219477 -116063012 + MIR SINE MIR 6 254 -8 387 127 16 0 chr12 28221872 28221935 -116060554 + L1MB7 LINE L1 6106 6169 -15 2220 115 3 7 chr12 28221936 28222241 -116060248 - AluSx SINE Alu -8 304 1 2507 77 0 0 chr12 28222652 28222963 -116059526 - AluY SINE Alu 0 311 1 2162 130 0 0 chr12 28222978 28223285 -116059204 - AluSx SINE Alu -5 307 1 222 313 40 20 chr12 28223525 28223624 -116058865 - MIR SINE MIR -16 246 146 1349 145 52 12 chr12 28223652 28223900 -116058589 - L1MD3 LINE L1 0 7995 7738 283 227 53 0 chr12 28224089 28224164 -116058325 - L1MC4 LINE L1 -1349 6693 6615 395 241 50 57 chr12 28224200 28224341 -116058148 - MIR SINE MIR -105 157 18 1320 137 64 9 chr12 28224537 28224770 -116057719 + L1MD3 LINE L1 7750 7995 0 23 0 0 0 chr12 28225093 28225116 -116057373 + AT_rich Low_complexity Low_complexity 1 23 0 805 178 8 0 chr12 28225632 28225761 -116056728 + AluJo SINE Alu 2 131 -171 1707 174 0 13 chr12 28226677 28226975 -116055514 + AluJb SINE Alu 1 294 -18 223 217 14 72 chr12 28227638 28227707 -116054782 + MIR SINE MIR 19 83 -125 298 232 43 85 chr12 28228227 28228391 -116054098 - TAR1 Satellite telomeric -1832 279 123 3351 137 40 16 chr12 28228417 28228987 -116053502 - LTR60 LTR ERV1 -2 584 1 1129 179 146 19 chr12 28228998 28229210 -116053279 - MER8 DNA MER2_type 0 239 1 586 97 0 0 chr12 28229250 28229322 -116053167 + tRNA-Lys-AAA tRNA tRNA 2 73 -3 850 179 0 65 chr12 28229329 28229497 -116052992 + AluJo SINE Alu 134 290 -22 888 149 0 0 chr12 28230171 28230292 -116052197 + FLAM_A SINE Alu 1 121 -12 626 244 73 0 chr12 28230922 28231086 -116051403 - MIR SINE MIR 0 262 87 23 54 0 0 chr12 28232239 28232276 -116050213 + AT_rich Low_complexity Low_complexity 1 37 0 1960 124 21 3 chr12 28232569 28232852 -116049637 - AluSg SINE Alu -22 288 1 1715 153 3 75 chr12 28232857 28233190 -116049299 - AluJo SINE Alu -3 309 1 2379 77 0 13 chr12 28233997 28234296 -116048193 - AluY SINE Alu -16 295 1 2048 129 10 10 chr12 28234775 28235078 -116047411 + AluJb SINE Alu 1 303 -9 1088 188 0 0 chr12 28236610 28236770 -116045719 + FRAM SINE Alu 1 160 -6 1859 142 25 0 chr12 28237352 28237626 -116044863 + AluJb SINE Alu 23 303 -9 306 247 155 0 chr12 28238002 28238099 -116044390 + MER112 DNA MER1_type 129 240 -20 294 232 265 7 chr12 28238421 28238572 -116043917 + LTR33 LTR ERVL 324 513 -8 202 238 89 79 chr12 28238572 28238653 -116043836 + MIR SINE MIR 116 200 -62 2305 96 23 0 chr12 28238653 28238956 -116043533 + AluSg SINE Alu 1 310 0 202 238 89 79 chr12 28238956 28238975 -116043514 + MIR SINE MIR 200 217 -45 1046 277 70 52 chr12 28239627 28239794 -116042695 - L2 LINE L2 -4 3309 3146 1847 126 7 11 chr12 28239794 28240065 -116042424 + AluSx SINE Alu 16 285 -27 1046 277 70 52 chr12 28240065 28240497 -116041992 - L2 LINE L2 -167 3146 2690 2274 114 0 0 chr12 28240497 28240794 -116041695 + AluSx SINE Alu 1 297 -15 1046 277 70 52 chr12 28240794 28241009 -116041480 - L2 LINE L2 -623 2690 2480 218 176 20 0 chr12 28241725 28241776 -116040713 + GA-rich Low_complexity Low_complexity 2 53 0 2413 83 0 3 chr12 28241918 28242230 -116040259 + AluY SINE Alu 1 311 0 215 278 231 0 chr12 28242779 28242887 -116039602 + MIR SINE MIR 17 149 -113 3965 137 29 2 chr12 28242896 28243482 -116039007 - MER7C DNA MER2_type 0 602 1 26 0 0 0 chr12 28243820 28243846 -116038643 + AT_rich Low_complexity Low_complexity 1 26 0 432 269 39 77 chr12 28243973 28244155 -116038334 + MER5B DNA MER1_type 1 175 -3 3125 195 128 29 chr12 28244169 28245038 -116037451 - LTR28 LTR ERV1 0 1020 5 253 250 0 0 chr12 28245040 28245100 -116037389 - L1ME LINE L1 -325 5796 5737 2322 114 0 0 chr12 28245198 28245505 -116036984 + AluSx SINE Alu 1 307 -5 928 126 28 0 chr12 28245527 28245670 -116036819 + L1MA3 LINE L1 6159 6305 0 733 162 0 8 chr12 28245758 28245875 -116036614 - MER45A DNA AcHobo 0 178 63 1944 155 3 0 chr12 28245951 28246247 -116036242 - AluJb SINE Alu -14 298 2 4459 132 9 42 chr12 28246614 28247349 -116035140 + MER50 LTR ERV1 1 711 -23 285 305 126 18 chr12 28247483 28247650 -116034839 - MIR SINE MIR -62 200 16 1345 159 47 27 chr12 28247671 28247929 -116034560 + MLT1C LTR MaLR 205 467 0 745 180 0 8 chr12 28248211 28248333 -116034156 + AluJo SINE Alu 14 134 -178 1642 166 14 41 chr12 28248343 28248638 -116033851 + AluJb SINE Alu 1 287 -25 43 0 0 0 chr12 28248638 28248681 -116033808 + AT_rich Low_complexity Low_complexity 1 43 0 2090 84 40 0 chr12 28248695 28248991 -116033498 - AluSp SINE Alu 0 307 1 289 313 0 0 chr12 28249209 28249276 -116033213 - MIR SINE MIR -160 102 36 356 348 120 0 chr12 28250446 28250696 -116031793 + L2 LINE L2 2494 2773 -541 1437 271 79 29 chr12 28250781 28251590 -116030899 - L2 LINE L2 -22 3291 2384 1799 160 7 7 chr12 28251611 28251905 -116030584 + AluJb SINE Alu 1 294 -18 309 328 16 25 chr12 28252023 28252145 -116030344 + L2 LINE L2 2935 3055 -217 2563 140 96 77 chr12 28252147 28252681 -116029808 - MLT2B3 LTR ERVL -8 546 3 1721 152 47 7 chr12 28252682 28252979 -116029510 + AluJb SINE Alu 1 309 -3 1813 151 14 7 chr12 28253182 28253461 -116029028 + AluSx SINE Alu 1 281 -31 1906 133 36 3 chr12 28254001 28254303 -116028186 - AluSq SINE Alu -1 312 1 328 91 0 0 chr12 28254303 28254347 -116028142 - Alu SINE Alu -259 44 1 187 247 123 0 chr12 28255360 28255441 -116027048 + L2 LINE L2 2331 2421 -893 26 30 0 0 chr12 28255446 28255479 -116027010 + AT_rich Low_complexity Low_complexity 1 33 0 2314 94 0 10 chr12 28255582 28255881 -116026608 + AluSx SINE Alu 1 296 -16 816 161 8 0 chr12 28255934 28256058 -116026431 - FLAM_C SINE Alu -8 125 1 229 191 0 0 chr12 28256735 28256777 -116025712 + MIR SINE MIR 183 224 -38 1939 124 50 7 chr12 28257019 28257301 -116025188 + AluSx SINE Alu 1 294 -18 2307 117 0 0 chr12 28257681 28257990 -116024499 + AluSx SINE Alu 1 309 -3 258 125 21 21 chr12 28258116 28258164 -116024325 - U5 snRNA snRNA -68 48 1 2809 13 0 0 chr12 28258265 28258568 -116023921 + AluYb8 SINE Alu 5 307 -11 2235 123 0 7 chr12 28258986 28259295 -116023194 + AluSq SINE Alu 1 307 -6 25 0 0 0 chr12 28259361 28259386 -116023103 + AT_rich Low_complexity Low_complexity 1 25 0 238 280 75 32 chr12 28259386 28259479 -116023010 - HAL1 LINE L1 -15 2492 2396 229 194 32 43 chr12 28259482 28259575 -116022914 + (TATATG)n Simple_repeat Simple_repeat 3 94 0 1787 159 11 3 chr12 28260252 28260561 -116021928 + AluJb SINE Alu 1 311 0 258 155 0 41 chr12 28260678 28260916 -116021573 + AluJo SINE Alu 5 302 0 244 357 83 3 chr12 28261129 28261263 -116021226 - MIR SINE MIR -69 139 13 918 139 0 0 chr12 28263138 28263267 -116019222 + FLAM_C SINE Alu 6 134 -9 2385 82 0 0 chr12 28263339 28263633 -116018856 + AluSx SINE Alu 3 296 -16 1286 202 55 7 chr12 28263815 28264087 -116018402 - AluJo SINE Alu -23 289 5 573 307 115 8 chr12 28264232 28264607 -116017882 - L1ME LINE L1 -321 5800 5386 1943 148 0 13 chr12 28264675 28264978 -116017511 - AluJb SINE Alu -5 307 9 3120 157 45 29 chr12 28264995 28265837 -116016652 - L1MB7 LINE L1 0 6184 5356 2402 63 0 3 chr12 28265837 28266124 -116016365 - AluY SINE Alu -12 299 14 3120 157 45 29 chr12 28266124 28266169 -116016320 - L1MB7 LINE L1 -828 5356 5313 1670 183 52 0 chr12 28266169 28266497 -116015992 + MER7A DNA MER2_type 2 344 -2 3120 157 45 29 chr12 28266497 28266657 -116015832 - L1MB7 LINE L1 -871 5313 5157 1150 168 127 59 chr12 28266657 28266979 -116015510 + MER2 DNA MER2_type 1 344 0 3120 157 45 29 chr12 28266979 28267099 -116015390 - L1MB7 LINE L1 -1027 5157 4857 569 271 72 51 chr12 28267157 28267954 -116014535 - L1MC5 LINE L1 -35 7926 7200 866 231 28 36 chr12 28267963 28268214 -116014275 - L1MC4 LINE L1 -1029 7013 6765 310 306 97 21 chr12 28268500 28268644 -116013845 - L1M4 LINE L1 -2264 3882 3728 2316 152 193 131 chr12 28268852 28269323 -116013166 - L1MC3 LINE L1 0 7785 7345 1729 139 3 71 chr12 28269323 28269647 -116012842 - AluJb SINE Alu -10 302 1 2316 152 193 131 chr12 28269647 28269742 -116012747 - L1MC3 LINE L1 -440 7345 7257 381 208 47 38 chr12 28269742 28269848 -116012641 - MLT1F1 LTR MaLR -442 125 19 2316 152 193 131 chr12 28269848 28270143 -116012346 - L1MC3 LINE L1 -528 7257 6758 2193 113 0 0 chr12 28270452 28270745 -116011744 - AluSx SINE Alu -19 293 1 273 267 244 8 chr12 28271598 28271729 -116010760 - MIR SINE MIR -50 212 51 486 0 0 0 chr12 28271864 28271918 -116010571 + (TA)n Simple_repeat Simple_repeat 2 55 0 223 339 211 0 chr12 28272792 28272901 -116009588 - L2 LINE L2 0 3272 3141 2332 93 7 0 chr12 28273116 28273417 -116009072 - AluSp SINE Alu -10 303 1 310 281 86 0 chr12 28273577 28273705 -116008784 - MER103 DNA DNA -9 157 19 1600 165 39 14 chr12 28275743 28276028 -116006461 - AluJo SINE Alu -5 307 16 2069 130 49 11 chr12 28276963 28277310 -116005179 - MER46B DNA MER2_type -1 235 1 22 0 0 0 chr12 28277310 28277332 -116005157 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 28277465 28277491 -116004998 + AT_rich Low_complexity Low_complexity 1 26 0 324 375 117 38 chr12 28277682 28277790 -116004699 + L3 LINE CR1 1263 1361 -216 2033 106 60 3 chr12 28277790 28278074 -116004415 - AluSx SINE Alu -12 300 1 324 375 117 38 chr12 28278074 28278256 -116004233 + L3 LINE CR1 1361 1576 -1 209 200 18 55 chr12 28278447 28278502 -116003987 - L3 LINE CR1 -251 1326 1274 1931 163 3 7 chr12 28279144 28279445 -116003044 - AluJb SINE Alu -12 300 1 1975 107 0 11 chr12 28279793 28280074 -116002415 + AluSx SINE Alu 33 310 -2 304 268 62 31 chr12 28280150 28280247 -116002242 + MIR SINE MIR 31 130 -132 192 217 43 0 chr12 28280285 28280331 -116002158 + L2 LINE L2 3263 3310 -3 601 167 10 0 chr12 28280865 28280967 -116001522 + FLAM_A SINE Alu 8 110 -32 1733 179 0 17 chr12 28281736 28282037 -116000452 - AluJo SINE Alu -16 296 1 2437 82 0 0 chr12 28282122 28282427 -116000062 + AluSq SINE Alu 1 305 -8 818 213 40 40 chr12 28282571 28282853 -115999636 - MLT1A2 LTR MaLR 0 374 1 1000 105 0 0 chr12 28283188 28283321 -115999168 + AluSq/x SINE Alu 1 133 -179 863 123 43 0 chr12 28283849 28283987 -115998502 - AluJb SINE Alu -29 283 140 355 317 79 31 chr12 28284112 28284264 -115998225 - MIR3 SINE MIR -43 165 6 230 240 93 80 chr12 28284406 28285046 -115997443 - MER5A DNA MER1_type -5 184 33 464 198 98 81 chr12 28284423 28284446 -115998043 + MER5B DNA MER1_type 35 56 -122 4035 35 10 0 chr12 28284446 28284937 -115997552 - L1PA4 LINE L1 0 6155 5660 464 198 98 81 chr12 28284937 28285061 -115997428 + MER5B DNA MER1_type 56 172 -6 1175 146 103 5 chr12 28285144 28285357 -115997132 + MER46A DNA MER2_type 2 235 -1 554 351 123 24 chr12 28285604 28285977 -115996512 + L2 LINE L2 2420 2829 -485 350 332 187 14 chr12 28286046 28286335 -115996154 + L2 LINE L2 2934 3272 0 903 222 0 6 chr12 28286775 28286955 -115995534 + MIR SINE MIR 64 242 -20 279 351 75 21 chr12 28286969 28287157 -115995332 + L2 LINE L2 2858 3055 -258 258 246 77 0 chr12 28287131 28287196 -115995293 + L2 LINE L2 3244 3313 0 * 297 0 0 0 chr12 28287315 28287348 -115995141 + (TG)n Simple_repeat Simple_repeat 1 33 0 702 186 0 0 chr12 28287555 28287673 -115994816 - AluJb SINE Alu -20 292 175 671 200 9 0 chr12 28287750 28287865 -115994624 + FLAM_A SINE Alu 1 116 -17 280 171 99 63 chr12 28287958 28288069 -115994420 + L1ME4a LINE L1 5985 6099 -22 400 278 218 28 chr12 28288625 28288841 -115993648 - MIR SINE MIR -2 260 4 836 208 88 19 chr12 28288888 28289148 -115993341 + MER46C DNA MER2_type 18 295 -43 1925 160 0 7 chr12 28289397 28289697 -115992792 + AluJb SINE Alu 1 298 -14 2449 97 0 0 chr12 28289697 28290008 -115992481 + AluSx SINE Alu 1 311 -1 3252 128 68 27 chr12 28290212 28290799 -115991690 - LTR18B LTR ERVL 0 614 4 1255 143 8 73 chr12 28290833 28291092 -115991397 + AluJo SINE Alu 1 242 -70 603 100 55 55 chr12 28291750 28291860 -115990629 + HY1 scRNA scRNA 1 110 -2 26 0 0 0 chr12 28291860 28291886 -115990603 + AT_rich Low_complexity Low_complexity 1 26 0 2008 139 0 0 chr12 28292848 28293129 -115989360 + AluSx SINE Alu 1 281 -31 25 0 0 0 chr12 28293206 28293231 -115989258 + AT_rich Low_complexity Low_complexity 1 25 0 2111 133 3 0 chr12 28293361 28293663 -115988826 + AluJb SINE Alu 1 303 -9 210 191 0 0 chr12 28293954 28294001 -115988488 + GA-rich Low_complexity Low_complexity 2 48 0 1011 249 94 70 chr12 28295749 28295992 -115986497 + MER77 LTR ERV1 62 298 -307 2439 65 0 0 chr12 28295992 28296285 -115986204 + AluY SINE Alu 1 293 -18 1011 249 94 70 chr12 28296285 28296570 -115985919 + MER77 LTR ERV1 298 603 -2 768 154 0 0 chr12 28296742 28296859 -115985630 + FLAM_C SINE Alu 3 119 -24 198 143 0 0 chr12 28296866 28296901 -115985588 + (TA)n Simple_repeat Simple_repeat 2 36 0 324 0 0 0 chr12 28297227 28297263 -115985226 + (T)n Simple_repeat Simple_repeat 1 36 0 1779 167 37 0 chr12 28297268 28297567 -115984922 + AluJo SINE Alu 1 310 -2 1146 126 12 118 chr12 28297666 28297921 -115984568 - AluJo SINE Alu -3 309 82 23 0 0 0 chr12 28297930 28297953 -115984536 + AT_rich Low_complexity Low_complexity 1 23 0 2083 108 10 3 chr12 28298288 28298583 -115983906 + AluSq SINE Alu 1 297 -16 944 170 0 96 chr12 28298794 28298982 -115983507 - AluJb SINE Alu -14 298 129 1796 153 0 49 chr12 28298996 28299168 -115983321 - AluJb SINE Alu -19 293 141 2368 96 0 3 chr12 28299168 28299481 -115983008 - AluSx SINE Alu 0 312 1 1796 153 0 49 chr12 28299481 28299616 -115982873 - AluJb SINE Alu -171 141 1 609 89 11 0 chr12 28299808 28299898 -115982591 - L1PB4 LINE L1 -3 6153 6063 2134 110 13 3 chr12 28299967 28300268 -115982221 - AluSx SINE Alu -8 304 1 716 211 38 101 chr12 28300840 28301077 -115981412 + MIR SINE MIR 3 224 -38 1759 133 17 47 chr12 28301227 28301527 -115980962 - AluJo SINE Alu -21 291 1 1974 162 0 7 chr12 28302600 28302908 -115979581 - AluJb SINE Alu -5 307 2 186 43 0 0 chr12 28303154 28303177 -115979312 + (TC)n Simple_repeat Simple_repeat 2 24 0 213 317 150 43 chr12 28303199 28303713 -115978776 + L2 LINE L2 1880 2448 -866 1688 149 53 25 chr12 28303730 28304011 -115978478 - AluJo SINE Alu -21 291 3 2392 79 0 0 chr12 28304950 28305242 -115977247 - AluSc SINE Alu -17 292 1 1893 139 35 3 chr12 28305859 28306147 -115976342 - AluJb SINE Alu -15 297 1 2017 91 25 0 chr12 28306298 28306597 -115975892 + AluSp SINE Alu 1 306 0 2314 108 3 16 chr12 28306993 28307309 -115975180 + AluSx SINE Alu 1 312 0 1899 115 57 14 chr12 28307517 28307796 -115974693 - AluSx SINE Alu -11 301 11 2018 109 0 0 chr12 28309082 28309357 -115973132 - AluSx SINE Alu -37 275 1 927 119 0 22 chr12 28309433 28309567 -115972922 + FLAM_C SINE Alu 1 131 -2 23 0 0 0 chr12 28309571 28309594 -115972895 + AT_rich Low_complexity Low_complexity 1 23 0 881 215 6 0 chr12 28310754 28310926 -115971563 + AluSg/x SINE Alu 115 287 -23 185 0 40 0 chr12 28310932 28310957 -115971532 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 743 134 0 0 chr12 28311937 28312056 -115970433 + FLAM_C SINE Alu 1 119 -24 211 213 33 16 chr12 28312487 28312548 -115969941 - MER5A DNA MER1_type -85 104 43 2207 128 0 6 chr12 28312742 28313055 -115969434 + AluSx SINE Alu 1 311 -1 26 0 0 0 chr12 28313187 28313213 -115969276 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chr12 28313236 28313268 -115969221 + AT_rich Low_complexity Low_complexity 1 32 0 1189 123 91 16 chr12 28313446 28313618 -115968871 - LTR54 LTR ERV1 -1 509 351 2419 53 0 3 chr12 28313618 28313901 -115968588 + AluY SINE Alu 1 282 -29 415 0 0 0 chr12 28313901 28313947 -115968542 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1189 123 91 16 chr12 28313947 28314171 -115968318 - LTR54 LTR ERV1 -159 351 21 581 181 0 11 chr12 28314176 28314410 -115968079 + AluJ SINE Alu 6 289 -23 782 156 8 8 chr12 28314444 28314572 -115967917 - AluJo SINE Alu -178 134 7 2411 86 7 0 chr12 28314684 28314985 -115967504 + AluSq SINE Alu 1 303 -10 366 164 336 0 chr12 28315071 28315181 -115967308 + MIR SINE MIR 111 257 -5 312 173 25 12 chr12 28315181 28315262 -115967227 - L1ME LINE L1 -363 5758 5677 1837 148 0 72 chr12 28315324 28315656 -115966833 + AluJb SINE Alu 1 308 -4 390 226 7 54 chr12 28316690 28316808 -115965681 + FLAM_A SINE Alu 47 130 -3 2309 88 3 0 chr12 28316821 28317117 -115965372 + AluSp SINE Alu 2 298 -15 2347 63 0 0 chr12 28317757 28318043 -115964446 - AluSg SINE Alu -24 286 1 24 32 0 0 chr12 28318694 28318725 -115963764 + GC_rich Low_complexity Low_complexity 1 31 0 23 97 0 0 chr12 28319010 28319082 -115963407 + GC_rich Low_complexity Low_complexity 1 72 0 2030 144 112 35 chr12 28321852 28322255 -115960234 - Tigger2a DNA MER2_type 0 434 1 2685 29 0 10 chr12 28322453 28322760 -115959729 - AluY SINE Alu -7 304 1 620 253 87 99 chr12 28322763 28322999 -115959490 - L1MC4a LINE L1 -1983 5825 5588 2381 69 6 25 chr12 28322999 28323316 -115959173 - AluY SINE Alu 0 311 1 620 253 87 99 chr12 28323316 28323344 -115959145 - L1MC4a LINE L1 -2220 5588 5561 1024 166 0 33 chr12 28323344 28323525 -115958964 + FAM SINE Alu 1 175 0 620 253 87 99 chr12 28323525 28323837 -115958652 - L1MC4a LINE L1 -2247 5561 5255 1657 154 36 56 chr12 28324074 28324379 -115958110 - AluJo SINE Alu -13 299 1 22 80 0 0 chr12 28324698 28324748 -115957741 + AT_rich Low_complexity Low_complexity 1 50 0 415 259 114 13 chr12 28324825 28324983 -115957506 - MIR SINE MIR 0 262 89 2511 66 0 10 chr12 28325596 28325901 -115956588 - AluY SINE Alu -9 302 1 2253 112 0 0 chr12 28326094 28326390 -115956099 + AluSx SINE Alu 6 301 -11 487 265 29 6 chr12 28327131 28327301 -115955188 - MIR SINE MIR -12 250 77 841 136 0 16 chr12 28327453 28327578 -115954911 + FRAM SINE Alu 29 151 -25 359 197 1 48 chr12 28328100 28328191 -115954298 - MIR SINE MIR -62 146 72 216 0 0 0 chr12 28328692 28328716 -115953773 + (GCTG)n Simple_repeat Simple_repeat 2 25 0 385 251 181 0 chr12 28329151 28329313 -115953176 - MIR3 SINE MIR -62 146 4 1574 188 0 54 chr12 28329639 28329964 -115952525 + AluJo SINE Alu 1 309 0 2227 95 3 0 chr12 28331382 28331699 -115950790 - AluSx SINE Alu 0 318 1 800 167 8 0 chr12 28331800 28331926 -115950563 - FLAM_C SINE Alu -16 127 1 712 183 8 0 chr12 28332006 28332132 -115950357 + AluJo/FLAM SINE Alu 5 131 -171 1786 166 10 16 chr12 28332134 28332448 -115950041 + AluJo SINE Alu 1 312 0 1329 227 58 68 chr12 28332993 28333369 -115949120 - MLT1C LTR MaLR 0 467 95 553 135 6 190 chr12 28333369 28333532 -115948957 - FLAM_C SINE Alu 0 133 1 1329 227 58 68 chr12 28333532 28333622 -115948867 - MLT1C LTR MaLR -372 95 6 1781 153 3 30 chr12 28335514 28335814 -115946675 - AluJb SINE Alu -20 292 1 24 32 0 0 chr12 28337234 28337265 -115945224 + AT_rich Low_complexity Low_complexity 1 31 0 253 185 19 0 chr12 28338448 28338502 -115943987 - L2 LINE L2 0 3272 3218 300 70 0 0 chr12 28339211 28339254 -115943235 + (TG)n Simple_repeat Simple_repeat 2 44 0 727 92 0 0 chr12 28339512 28339610 -115942879 + AluSg/x SINE Alu 208 305 -4 370 305 119 6 chr12 28340435 28340612 -115941877 - MER117 DNA MER1_type 0 197 1 245 311 89 0 chr12 28340712 28340802 -115941687 - L2 LINE L2 -22 3250 3153 1537 150 11 30 chr12 28341995 28342261 -115940228 + AluJo SINE Alu 39 299 -13 455 234 55 7 chr12 28342345 28342490 -115939999 - MIR SINE MIR -17 245 94 946 135 0 14 chr12 28342795 28342936 -115939553 + FLAM_C SINE Alu 1 139 -4 291 190 0 0 chr12 28343232 28343290 -115939199 + CT-rich Low_complexity Low_complexity 3 60 0 1633 142 38 48 chr12 28343293 28343582 -115938907 - AluJo SINE Alu -24 288 3 731 300 31 43 chr12 28343727 28343788 -115938701 + MIR SINE MIR 9 69 -193 2359 84 0 47 chr12 28343788 28344109 -115938380 - AluSg SINE Alu -3 307 2 731 300 31 43 chr12 28344109 28344304 -115938185 + MIR SINE MIR 69 262 0 299 250 0 0 chr12 28344637 28344697 -115937792 - MLT1K LTR MaLR -347 241 182 1057 205 118 72 chr12 28344771 28345030 -115937459 - MER110 LTR ERV1 0 491 212 856 131 0 182 chr12 28345030 28345266 -115937223 - 7SK RNA RNA 0 193 1 1057 205 118 72 chr12 28345266 28345337 -115937152 - MER110 LTR ERV1 -279 212 146 536 185 0 0 chr12 28346264 28346356 -115936133 - AluSg/x SINE Alu -14 295 204 304 77 0 0 chr12 28346659 28346698 -115935791 - 5S rRNA rRNA -82 39 1 1207 84 6 6 chr12 28346919 28347098 -115935391 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1654 150 64 4 chr12 28347485 28347765 -115934724 - AluSx SINE Alu -13 299 3 661 189 75 66 chr12 28348220 28348371 -115934118 + ORSL DNA AcHobo 11 166 -109 1869 154 3 22 chr12 28348371 28348683 -115933806 - AluJo SINE Alu -6 306 1 661 189 75 66 chr12 28348683 28348743 -115933746 + ORSL DNA AcHobo 166 224 -51 447 284 71 0 chr12 28348879 28349048 -115933441 + MIR SINE MIR 32 212 -50 2278 122 0 0 chr12 28349295 28349607 -115932882 + AluSq SINE Alu 1 312 -1 449 226 24 32 chr12 28350433 28350557 -115931932 - MLT1J LTR MaLR -9 502 380 433 301 10 0 chr12 28350557 28350660 -115931829 - MER63A DNA MER1_type 0 210 107 978 128 0 0 chr12 28350663 28350844 -115931645 + FLAM_C SINE Alu 1 181 0 518 211 46 0 chr12 28350844 28350953 -115931536 - MER63A DNA MER1_type 0 114 1 658 291 54 77 chr12 28350974 28351287 -115931202 - MLT1J LTR MaLR -144 367 62 1824 207 173 106 chr12 28351288 28351901 -115930588 + MLT1E3 LTR MaLR 1 624 0 277 190 0 35 chr12 28351904 28351962 -115930527 - MLT1J LTR MaLR -450 61 6 2401 92 3 0 chr12 28352068 28352363 -115930126 - AluSx SINE Alu -16 296 1 1532 238 153 11 chr12 28352363 28352742 -115929747 - MLT1E LTR MaLR -160 433 1 3342 146 14 13 chr12 28352771 28353327 -115929162 - L1MA5 LINE L1 -2 6298 5742 332 276 84 55 chr12 28353352 28353768 -115928721 + MLT1L LTR MaLR 110 607 -2 436 255 39 0 chr12 28354386 28354488 -115928001 + L2 LINE L2 3166 3271 -1 208 275 275 0 chr12 28354550 28354624 -115927865 + L2 LINE L2 3148 3200 -72 2288 149 44 44 chr12 28354624 28354698 -115927791 - MSTA LTR MaLR 0 428 355 1734 153 34 20 chr12 28354698 28354993 -115927496 - AluJb SINE Alu -13 299 1 2288 149 44 44 chr12 28354993 28355346 -115927143 - MSTA LTR MaLR -72 356 1 208 275 275 0 chr12 28355346 28355362 -115927127 + L2 LINE L2 3200 3263 -9 262 241 0 0 chr12 28355696 28355754 -115926735 - MER63 DNA MER1_type -26 1034 977 536 135 0 0 chr12 28355756 28355830 -115926659 - MER63 DNA MER1_type -86 750 677 599 125 10 0 chr12 28356183 28356287 -115926202 + (TCCCC)n Simple_repeat Simple_repeat 3 107 0 1721 157 3 45 chr12 28356291 28356577 -115925912 - AluJo SINE Alu -38 274 1 2414 137 213 27 chr12 28357186 28357698 -115924791 - LTR18B LTR ERVL -6 608 2 340 269 28 9 chr12 28358153 28358261 -115924228 - MER5A DNA MER1_type -71 118 9 414 73 0 0 chr12 28358490 28358545 -115923944 + AluSx SINE Alu 2 56 -255 4015 117 28 0 chr12 28358545 28359109 -115923380 - LTR19B LTR ERV1 0 580 1 2035 80 8 0 chr12 28359109 28359358 -115923131 + AluSx SINE Alu 52 302 -10 196 233 167 0 chr12 28360785 28360845 -115921644 + MIR SINE MIR 81 150 -58 1698 136 0 19 chr12 28361734 28361999 -115920490 - Tigger5 DNA MER2_type 0 2323 2064 * 1816 213 0 3 chr12 28361969 28362297 -115920192 - Tigger5 DNA MER2_type -1996 327 1 382 191 0 0 chr12 28362370 28362433 -115920056 - MER94 DNA DNA -70 64 2 231 356 0 10 chr12 28362525 28362626 -115919863 + MIR SINE MIR 6 105 -157 231 238 16 0 chr12 28362773 28362836 -115919653 + MIR SINE MIR 91 154 -108 1602 252 169 11 chr12 28364250 28364718 -115917771 - MLT1F LTR MaLR 0 542 1 387 325 38 79 chr12 28364718 28365084 -115917405 - MLT1F-int LTR MaLR 0 1371 1021 2300 103 0 0 chr12 28365336 28365627 -115916862 - AluSc SINE Alu -18 291 1 1674 150 0 104 chr12 28365627 28365954 -115916535 - AluJb SINE Alu -19 293 1 1520 89 11 0 chr12 28366356 28366567 -115915922 - AluSg/x SINE Alu 0 304 92 1369 109 0 0 chr12 28366567 28366742 -115915747 - AluSq SINE Alu -138 175 1 696 286 18 5 chr12 28366753 28366977 -115915512 - MLT1F-int LTR MaLR -860 511 285 329 283 43 0 chr12 28367049 28367141 -115915348 - MLT1F-int LTR MaLR -1275 96 1 277 339 62 0 chr12 28367178 28367290 -115915199 - MIR SINE MIR -113 149 31 315 237 227 31 chr12 28367479 28367576 -115914913 - MIR SINE MIR -117 145 30 437 260 65 32 chr12 28367675 28367829 -115914660 + MIR SINE MIR 93 251 -11 21 0 0 0 chr12 28369966 28369987 -115912502 + AT_rich Low_complexity Low_complexity 1 21 0 1362 108 46 0 chr12 28371013 28371208 -115911281 - L1PA14 LINE L1 0 6161 5958 2218 110 0 0 chr12 28371217 28371509 -115910980 - AluSq SINE Alu -19 294 3 2103 138 3 0 chr12 28372063 28372374 -115910115 + AluSx SINE Alu 1 312 0 24 0 0 0 chr12 28372374 28372398 -115910091 + AT_rich Low_complexity Low_complexity 1 24 0 12326 118 7 12 chr12 28372415 28374212 -115908277 + Tigger1 DNA MER2_type 1 1789 -629 1172 102 94 129 chr12 28374210 28374466 -115908023 + Tigger1 DNA MER2_type 2172 2418 0 * 2028 157 3 0 chr12 28375178 28375483 -115907006 + AluJb SINE Alu 1 306 -6 1593 164 14 27 chr12 28375850 28376143 -115906346 - AluJo SINE Alu -16 296 8 657 236 37 65 chr12 28376152 28376330 -115906159 - HAL1 LINE L1 -4 2503 2332 2363 96 3 6 chr12 28376330 28376644 -115905845 - AluSq SINE Alu 0 313 1 657 236 37 65 chr12 28376644 28376711 -115905778 - HAL1 LINE L1 -175 2332 2265 402 187 103 0 chr12 28376736 28376843 -115905646 - HAL1 LINE L1 -347 2160 2043 1939 170 3 0 chr12 28378542 28378854 -115903635 - AluSp SINE Alu 0 313 1 21 0 0 0 chr12 28380219 28380240 -115902249 + AT_rich Low_complexity Low_complexity 1 21 0 2152 130 0 0 chr12 28381127 28381427 -115901062 - AluSx SINE Alu -12 300 1 341 287 41 33 chr12 28381457 28381579 -115900910 - L2 LINE L2 0 3313 3191 351 0 0 0 chr12 28381832 28381871 -115900618 + (CA)n Simple_repeat Simple_repeat 2 40 0 398 213 96 25 chr12 28381991 28382119 -115900370 - L1ME4a LINE L1 -4 6087 1233 1769 140 49 18 chr12 28382161 28382447 -115900042 + AluJb SINE Alu 7 301 -11 433 292 66 20 chr12 28383967 28384167 -115898322 - MIR SINE MIR -48 214 2 250 398 18 0 chr12 28384167 28384280 -115898209 + MIR3 SINE MIR 40 154 -54 14171 128 12 3 chr12 28384455 28387377 -115895112 - L1PA10 LINE L1 0 6168 3230 1956 179 48 32 chr12 28387377 28387918 -115894571 + MLT2A2 LTR ERVL 4 554 0 10900 188 12 13 chr12 28387921 28390106 -115892383 - L1PA10 LINE L1 -2916 3230 1048 3028 130 27 0 chr12 28390313 28390758 -115891731 + LTR32 LTR ERVL 15 471 0 265 343 45 26 chr12 28391279 28391554 -115890935 - L2 LINE L2 -235 3037 2701 800 176 8 23 chr12 28391921 28392052 -115890437 - FLAM_C SINE Alu -4 129 1 29 28 0 0 chr12 28392061 28392097 -115890392 + AT_rich Low_complexity Low_complexity 1 36 0 2126 174 14 5 chr12 28392100 28392468 -115890021 - L1PA16 LINE L1 -5 6161 5791 288 296 139 0 chr12 28392561 28392676 -115889813 - L2 LINE L2 -1 3271 3141 760 231 19 52 chr12 28392688 28392774 -115889715 - MER6B DNA MER2_type -660 205 118 1856 152 10 23 chr12 28392774 28393077 -115889412 - AluJo SINE Alu -13 299 1 760 231 19 52 chr12 28393077 28393202 -115889287 - MER6B DNA MER2_type -747 118 1 322 325 150 49 chr12 28393296 28393702 -115888787 + LTR67 LTR ERVL 109 555 -2 819 147 41 100 chr12 28394106 28394276 -115888213 - AluSg/x SINE Alu -19 293 134 2258 191 19 40 chr12 28394459 28394940 -115887549 + MLT1D LTR MaLR 27 497 -8 6861 94 20 4 chr12 28395291 28396733 -115885756 - L1PA10 LINE L1 -4 6164 4707 593 257 73 116 chr12 28396812 28397303 -115885186 + LTR67 LTR ERVL 82 551 -6 592 341 70 61 chr12 28397303 28397370 -115885119 - L2 LINE L2 -451 2863 2798 420 20 0 0 chr12 28397370 28397419 -115885070 + (TAA)n Simple_repeat Simple_repeat 2 50 0 1631 191 7 0 chr12 28397422 28397705 -115884784 - AluJo SINE Alu -25 287 3 592 341 70 61 chr12 28397705 28398320 -115884169 - L2 LINE L2 -517 2797 2171 967 246 177 35 chr12 28398461 28398867 -115883622 + LTR16C LTR ERVL 28 491 0 188 309 173 25 chr12 28399752 28399833 -115882656 - L2 LINE L2 -20 3252 3160 712 211 0 0 chr12 28402306 28402429 -115880060 - FLAM_C SINE Alu -18 125 3 1358 218 84 20 chr12 28403364 28403722 -115878767 - L1MA10 LINE L1 -29 6305 5925 688 245 20 7 chr12 28404236 28404383 -115878106 + MER58B DNA MER1_type 193 341 0 193 310 69 0 chr12 28404392 28404479 -115878010 - L2 LINE L2 -733 2581 2489 185 180 20 0 chr12 28404544 28404594 -115877895 + (TG)n Simple_repeat Simple_repeat 1 51 0 276 311 94 9 chr12 28406549 28406655 -115875834 - L2 LINE L2 -1 3312 3198 1967 157 16 0 chr12 28407952 28408257 -115874232 + AluSx SINE Alu 1 310 -2 354 278 22 0 chr12 28411251 28411341 -115871148 + MER5A DNA MER1_type 9 100 -89 204 283 53 80 chr12 28411639 28411752 -115870737 + L2 LINE L2 3204 3313 0 4733 179 31 42 chr12 28411993 28412176 -115870313 - L1MB3 LINE L1 0 6183 5999 7212 50 11 29 chr12 28412176 28413745 -115868744 + SVA Other Other 1 1386 0 4733 179 31 42 chr12 28413745 28414023 -115868466 - L1MB3 LINE L1 -184 5999 5719 2161 118 147 21 chr12 28414023 28414403 -115868086 - MSTA LTR MaLR 0 428 1 4733 179 31 42 chr12 28414403 28415577 -115866912 - L1MB3 LINE L1 -464 5719 4569 972 251 119 22 chr12 28416626 28417028 -115865461 - LTR16A LTR ERVL -9 441 1 2136 96 24 3 chr12 28417100 28417224 -115865265 + AluY SINE Alu 1 121 -190 396 0 0 0 chr12 28417224 28417268 -115865221 + (CA)n Simple_repeat Simple_repeat 2 45 0 2136 96 24 3 chr12 28417268 28417435 -115865054 + AluY SINE Alu 121 298 -13 13484 165 41 26 chr12 28417680 28419652 -115862837 - L1MA8 LINE L1 -12 7300 5359 192 40 0 0 chr12 28419652 28419677 -115862812 + (TA)n Simple_repeat Simple_repeat 2 26 0 13484 165 41 26 chr12 28419677 28420376 -115862113 - L1MA8 LINE L1 -1953 5359 4672 2215 102 0 0 chr12 28420376 28420682 -115861807 + AluSx SINE Alu 1 306 0 13484 165 41 26 chr12 28420682 28421966 -115860523 - L1MA8 LINE L1 -2640 4672 3284 1639 175 3 28 chr12 28421966 28422251 -115860238 - AluJo SINE Alu -34 278 1 13484 165 41 26 chr12 28422251 28422646 -115859843 - L1MA8 LINE L1 -4028 3284 2896 1826 178 3 20 chr12 28422715 28423019 -115859470 - AluJo SINE Alu -13 299 1 671 271 12 91 chr12 28423081 28423160 -115859329 - L1MA8 LINE L1 -4907 2191 2107 2386 106 0 0 chr12 28423160 28423471 -115859018 + AluSx SINE Alu 1 311 -1 671 271 12 91 chr12 28423471 28423964 -115858525 - L1MA8 LINE L1 -4991 2107 1630 272 329 19 25 chr12 28424710 28424871 -115857618 - L1MA8 LINE L1 -5981 1117 958 225 125 0 42 chr12 28425521 28425569 -115856920 + L1MC4 LINE L1 6658 6703 -1339 647 289 57 30 chr12 28425588 28425768 -115856721 - L1MC4a LINE L1 -813 5333 5682 2385 74 0 13 chr12 28425768 28426078 -115856411 - AluY SINE Alu -5 306 1 647 289 57 30 chr12 28426078 28426777 -115855712 - L1MC4a LINE L1 -463 5683 5004 230 277 0 0 chr12 28426777 28426842 -115855647 + MIR SINE MIR 129 193 -69 404 256 39 45 chr12 28426947 28427103 -115855386 - L1MC4a LINE L1 -1815 4331 4177 2137 136 0 0 chr12 28427318 28427620 -115854869 + AluJb SINE Alu 1 302 -10 970 272 54 29 chr12 28428104 28428552 -115853937 - HAL1 LINE L1 -806 1701 1243 788 178 0 15 chr12 28428821 28428956 -115853533 + FLAM_C SINE Alu 1 133 0 293 231 133 79 chr12 28429127 28429607 -115852882 + L1ME4a LINE L1 5576 6081 -40 4873 138 16 25 chr12 28429643 28430552 -115851937 - L1MA6 LINE L1 0 6300 5400 1079 163 56 60 chr12 28430552 28430757 -115851732 + MSTB2 LTR MaLR 1 206 -251 1355 90 25 94 chr12 28430757 28431001 -115851488 - MER30 DNA MER1_type 0 230 4 1079 163 56 60 chr12 28431001 28431047 -115851442 + MSTB2 LTR MaLR 206 251 -206 4000 228 45 40 chr12 28431047 28432292 -115850197 - L1 LINE L1 -2776 4789 3552 2074 110 4 7 chr12 28432292 28432600 -115849889 - AluSc SINE Alu 0 307 1 4000 228 45 40 chr12 28432600 28433763 -115848726 - L1 LINE L1 -4013 3552 2396 214 321 0 0 chr12 28434574 28434630 -115847859 - MIR SINE MIR -152 110 55 252 225 58 17 chr12 28434889 28435009 -115847480 + (TA)n Simple_repeat Simple_repeat 1 125 0 2151 120 14 0 chr12 28435140 28435431 -115847058 + AluSx SINE Alu 1 295 -17 2134 107 7 0 chr12 28436089 28436378 -115846111 - AluSx SINE Alu -21 291 1 1855 109 25 11 chr12 28436479 28436754 -115845735 + AluSc SINE Alu 20 298 -11 270 339 8 65 chr12 28436822 28436946 -115845543 - MIR3 SINE MIR -2 206 90 724 208 52 5 chr12 28437187 28437379 -115845110 + L1MC3 LINE L1 7585 7785 0 261 0 0 0 chr12 28438445 28438474 -115844015 + (TG)n Simple_repeat Simple_repeat 2 30 0 1692 118 7 0 chr12 28438678 28438948 -115843541 + L1PB4 LINE L1 5420 5691 -465 2506 61 0 19 chr12 28438976 28439288 -115843201 - AluY SINE Alu -5 306 1 2595 157 6 10 chr12 28439312 28439796 -115842693 + L1PB4 LINE L1 5675 6156 0 445 337 83 0 chr12 28439919 28440100 -115842389 + LTR33 LTR ERVL 2 197 -324 370 225 99 28 chr12 28440159 28440341 -115842148 + LTR33 LTR ERVL 327 521 0 297 351 32 22 chr12 28440387 28440572 -115841917 - MIR SINE MIR -54 208 19 310 311 161 22 chr12 28441878 28442058 -115840431 + L2 LINE L2 2428 2632 -682 1719 192 11 50 chr12 28442066 28442446 -115840043 - MLT1A1 LTR MaLR 0 365 1 3245 153 20 77 chr12 28442709 28443441 -115839048 - LTR8 LTR ERV1 0 691 1 181 329 89 62 chr12 28443791 28443937 -115838552 + L2 LINE L2 2866 3015 -257 5344 119 13 35 chr12 28444000 28444914 -115837575 - MER4D LTR ERV1 -9 894 1 2675 158 176 14 chr12 28444987 28445613 -115836876 - LTR8A LTR ERV1 0 727 1 267 151 159 103 chr12 28446138 28446264 -115836225 + MLT1F LTR MaLR 410 542 0 277 348 17 9 chr12 28446405 28446520 -115835969 + LTR67 LTR ERVL 100 215 -342 414 384 33 0 chr12 28447084 28447235 -115835254 - L2 LINE L2 -1 3271 3116 1767 176 22 11 chr12 28447394 28447753 -115834736 - MLT1A1 LTR MaLR -2 363 1 303 347 79 73 chr12 28447910 28448316 -115834173 - L2 LINE L2 -559 2755 2340 327 49 0 0 chr12 28448316 28448357 -115834132 + (TG)n Simple_repeat Simple_repeat 1 41 0 303 347 79 73 chr12 28448357 28448693 -115833796 - L2 LINE L2 -974 2340 2008 2091 125 3 13 chr12 28448914 28449219 -115833270 - AluSx SINE Alu -10 302 1 1079 92 7 0 chr12 28449344 28449486 -115833003 + AluSp SINE Alu 2 144 -169 315 265 140 70 chr12 28449486 28449686 -115832803 + L2 LINE L2 2489 2702 -612 681 372 54 30 chr12 28449781 28449812 -115832677 + L2 LINE L2 2857 2886 -386 2451 53 13 0 chr12 28449812 28450112 -115832377 - AluY SINE Alu -7 304 1 681 372 54 30 chr12 28450112 28450486 -115832003 + L2 LINE L2 2886 3272 0 277 299 23 11 chr12 28450516 28450603 -115831886 + L3 LINE CR1 1474 1561 -16 1000 261 32 19 chr12 28451911 28452225 -115830264 - LTR16A LTR ERVL 0 450 133 405 39 0 0 chr12 28452330 28452381 -115830108 + (TG)n Simple_repeat Simple_repeat 1 51 0 703 216 45 61 chr12 28452397 28452707 -115829782 + L1MC5 LINE L1 7634 7938 -23 1684 167 30 3 chr12 28453265 28453601 -115828888 + L1MA5 LINE L1 5948 6292 -8 216 278 28 28 chr12 28454519 28454627 -115827862 + CT-rich Low_complexity Low_complexity 1 108 0 5209 131 58 26 chr12 28455173 28456511 -115825978 + L1MA5A LINE L1 4561 5957 -340 2222 93 10 0 chr12 28456511 28456800 -115825689 + AluSx SINE Alu 1 292 -20 5209 131 58 26 chr12 28456800 28457151 -115825338 + L1MA5A LINE L1 5957 6295 -2 2459 65 3 13 chr12 28457914 28458223 -115824266 + AluY SINE Alu 1 306 -5 614 302 36 22 chr12 28458303 28458525 -115823964 - MIR SINE MIR -29 233 9 1058 269 49 59 chr12 28460145 28460636 -115821853 + L2 LINE L2 2815 3300 -13 193 80 0 0 chr12 28462336 28462361 -115820128 - L2 LINE L2 -20 3293 3269 556 286 15 77 chr12 28462886 28463159 -115819330 + MIR SINE MIR 2 257 -5 286 313 111 0 chr12 28463245 28463344 -115819145 - MIR SINE MIR -92 170 61 550 239 46 0 chr12 28463371 28463501 -115818988 - MIR SINE MIR -6 256 121 194 313 60 90 chr12 28464374 28464478 -115818011 - L2 LINE L2 -1 3312 3213 451 189 226 9 chr12 28464478 28464584 -115817905 - FLAM_A SINE Alu -4 129 1 194 313 60 90 chr12 28464584 28464645 -115817844 - L2 LINE L2 -100 3213 3152 187 274 71 12 chr12 28464748 28464832 -115817657 - MIR3 SINE MIR -117 91 3 24 0 0 0 chr12 28465229 28465253 -115817236 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr12 28465606 28465632 -115816857 + AT_rich Low_complexity Low_complexity 1 26 0 329 176 14 0 chr12 28465780 28465854 -115816635 + (TG)n Simple_repeat Simple_repeat 2 76 0 366 345 52 11 chr12 28466350 28466524 -115815965 + MIR SINE MIR 21 201 -61 219 151 27 5 chr12 28466538 28466615 -115815874 - L2 LINE L2 -5 3308 3191 1860 188 3 6 chr12 28467781 28468127 -115814362 - MLT1A1 LTR MaLR 0 365 21 689 262 87 34 chr12 28468308 28468562 -115813927 - MIR SINE MIR -1 261 3 200 213 21 0 chr12 28468601 28468648 -115813841 + CT-rich Low_complexity Low_complexity 2 49 0 23 68 0 0 chr12 28469532 28469576 -115812913 + AT_rich Low_complexity Low_complexity 1 44 0 281 335 75 22 chr12 28470388 28470666 -115811823 - MLT1L LTR MaLR -180 435 143 198 325 158 60 chr12 28471124 28471422 -115811067 + L2 LINE L2 2987 3313 0 227 189 0 0 chr12 28471704 28471741 -115810748 + L2 LINE L2 3221 3257 -15 247 282 0 43 chr12 28471747 28471864 -115810625 + CT-rich Low_complexity Low_complexity 3 114 0 1340 186 16 19 chr12 28471907 28472230 -115810259 + MER33 DNA MER1_type 3 324 0 230 136 23 0 chr12 28472682 28472726 -115809763 + (TA)n Simple_repeat Simple_repeat 1 45 0 445 132 8 147 chr12 28472755 28472884 -115809605 + L1MC1 LINE L1 4094 4204 -1942 6144 141 22 4 chr12 28472893 28474023 -115808466 + L1MC1 LINE L1 5185 6333 0 384 193 166 35 chr12 28474023 28474168 -115808321 - MER103 DNA DNA 0 166 3 23 33 0 0 chr12 28474818 28474848 -115807641 + AT_rich Low_complexity Low_complexity 1 30 0 3816 171 33 36 chr12 28475254 28476229 -115806260 + L1MB7 LINE L1 5157 6128 -56 307 375 69 17 chr12 28477049 28477281 -115805208 + MIR SINE MIR 2 245 -17 361 268 131 16 chr12 28477349 28477532 -115804957 + L1ME LINE L1 5574 5777 -344 1058 150 82 0 chr12 28477626 28477920 -115804569 + L1MB2 LINE L1 5163 5474 -709 279 0 0 0 chr12 28477922 28477953 -115804536 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 680 188 8 23 chr12 28477957 28478090 -115804399 + FLAM_C SINE Alu 1 131 -12 3368 166 33 18 chr12 28478100 28478440 -115804049 + L1MB2 LINE L1 5486 5819 -352 2652 42 0 0 chr12 28478440 28478749 -115803740 + AluY SINE Alu 1 309 -2 3368 166 33 18 chr12 28478749 28479076 -115803413 + L1MB2 LINE L1 5819 6163 -8 1686 182 11 0 chr12 28479240 28479526 -115802963 - AluJo SINE Alu -23 289 1 456 270 132 34 chr12 28480684 28480888 -115801601 + MIR SINE MIR 20 243 -19 2341 104 0 0 chr12 28481002 28481299 -115801190 - AluSg SINE Alu -13 297 1 2454 24 0 0 chr12 28481659 28481949 -115800540 - L1PA2 LINE L1 0 6155 5866 1933 183 0 6 chr12 28482311 28482622 -115799867 - AluJb SINE Alu -3 309 1 338 313 199 12 chr12 28482868 28483034 -115799455 - L2 LINE L2 -1 3271 3075 345 294 65 24 chr12 28483045 28483215 -115799274 + MIR SINE MIR 58 234 -28 563 279 61 6 chr12 28483534 28483699 -115798790 + L2 LINE L2 2899 3072 -241 762 305 60 0 chr12 28483706 28483939 -115798550 + MIR SINE MIR 1 247 -15 2112 121 0 0 chr12 28484225 28484539 -115797950 + AluSx SINE Alu 1 314 0 259 253 0 0 chr12 28484692 28484767 -115797722 + MER103 DNA DNA 11 85 -81 186 338 136 52 chr12 28485458 28485671 -115796818 - L2 LINE L2 -222 3050 2820 201 133 0 0 chr12 28486051 28486081 -115796408 + (CATA)n Simple_repeat Simple_repeat 3 32 0 308 314 146 22 chr12 28486178 28486315 -115796174 - L2 LINE L2 0 3272 3119 1541 205 30 19 chr12 28487256 28487617 -115794872 + MLT1A1 LTR MaLR 1 365 0 376 222 77 26 chr12 28487820 28487937 -115794552 - MLT1K LTR MaLR -320 268 146 24 0 0 0 chr12 28488030 28488054 -115794435 + AT_rich Low_complexity Low_complexity 1 24 0 2279 117 0 0 chr12 28488068 28488377 -115794112 + AluSx SINE Alu 1 309 -3 2393 109 0 0 chr12 28488388 28488700 -115793789 + AluSx SINE Alu 1 312 0 964 192 145 41 chr12 28488700 28489065 -115793424 - LTR37A LTR ERV1 -23 403 1 2001 132 6 38 chr12 28489879 28490227 -115792262 - AluSx SINE Alu 0 338 1 195 42 0 0 chr12 28491580 28491604 -115790885 + (TG)n Simple_repeat Simple_repeat 1 24 0 210 118 0 0 chr12 28491604 28491638 -115790851 + (GA)n Simple_repeat Simple_repeat 2 35 0 680 271 10 25 chr12 28491870 28492069 -115790420 + MIR SINE MIR 21 216 -46 346 273 83 41 chr12 28493232 28493353 -115789136 - L2 LINE L2 -5 3267 3142 24 0 0 0 chr12 28495198 28495222 -115787267 + AT_rich Low_complexity Low_complexity 1 24 0 5099 76 10 0 chr12 28495665 28496349 -115786140 + L1PA13 LINE L1 5472 6162 -1 24 53 0 0 chr12 28498203 28498241 -115784248 + AT_rich Low_complexity Low_complexity 1 38 0 2257 95 30 0 chr12 28499321 28499616 -115782873 + AluSx SINE Alu 1 304 -8 387 105 0 0 chr12 28500153 28500210 -115782279 + (TA)n Simple_repeat Simple_repeat 1 57 0 232 49 73 0 chr12 28500238 28500279 -115782210 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 251 143 0 18 chr12 28500343 28500399 -115782090 + (TA)n Simple_repeat Simple_repeat 2 56 0 319 37 19 37 chr12 28501109 28501163 -115781326 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 571 286 98 10 chr12 28501209 28501412 -115781077 - MIR SINE MIR -13 249 29 209 215 9 56 chr12 28501621 28501728 -115780761 + (TTAAA)n Simple_repeat Simple_repeat 4 105 0 412 307 34 39 chr12 28502791 28502996 -115779493 + MIR3 SINE MIR 3 206 -2 383 0 21 0 chr12 28503111 28503158 -115779331 + (TC)n Simple_repeat Simple_repeat 1 48 0 300 53 0 0 chr12 28503348 28503386 -115779103 + (GA)n Simple_repeat Simple_repeat 2 39 0 511 265 8 43 chr12 28503978 28504123 -115778366 - MIR SINE MIR -61 147 20 456 281 117 93 chr12 28508996 28509741 -115772748 - L1M2 LINE L1 -5716 1133 371 195 42 0 0 chr12 28510669 28510693 -115771796 + (CA)n Simple_repeat Simple_repeat 2 25 0 243 0 0 0 chr12 28510900 28510927 -115771562 + (A)n Simple_repeat Simple_repeat 1 27 0 324 0 0 0 chr12 28512970 28513006 -115769483 + (TG)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr12 28513005 28513035 -115769454 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 225 0 0 0 chr12 28518326 28518351 -115764138 + (T)n Simple_repeat Simple_repeat 1 25 0 296 297 0 40 chr12 28518506 28518607 -115763882 + GA-rich Low_complexity Low_complexity 2 98 0 255 253 0 72 chr12 28520058 28520141 -115762348 - L2 LINE L2 0 3272 3196 412 270 98 43 chr12 28520230 28520393 -115762096 + L2 LINE L2 3142 3313 0 250 331 95 34 chr12 28522017 28522165 -115760324 + MIR3 SINE MIR 2 158 -50 4357 99 3 2 chr12 28522331 28522959 -115759530 + L1PB2 LINE L1 5523 6151 0 943 244 103 63 chr12 28524427 28525010 -115757479 + MLT1L LTR MaLR 3 608 -7 290 219 0 31 chr12 28525701 28525765 -115756724 + HsTC2 DNA Tc2 80 141 -1757 * 733 215 135 33 chr12 28525764 28526054 -115756435 + HsTC2 DNA Tc2 1282 1541 -357 1856 168 9 25 chr12 28526054 28526370 -115756119 + AluJo SINE Alu 1 311 -1 733 215 135 33 chr12 28526370 28526478 -115756011 + HsTC2 DNA Tc2 1541 1898 0 2204 110 0 10 chr12 28526525 28526825 -115755664 - AluSq SINE Alu -15 298 2 343 360 18 6 chr12 28526888 28527052 -115755437 - LTR67 LTR ERVL -347 210 45 673 257 50 30 chr12 28528279 28528714 -115753775 - MLT1H LTR MaLR 0 549 13 6507 164 17 26 chr12 28529018 28529049 -115753440 + L1MB1 LINE L1 3930 3960 -2208 2143 124 0 17 chr12 28529049 28529348 -115753141 + AluSx SINE Alu 1 294 -18 6507 164 17 26 chr12 28529348 28531062 -115751427 + L1MB1 LINE L1 3960 5689 -479 1773 171 3 23 chr12 28531062 28531371 -115751118 - AluJo SINE Alu -9 303 1 6507 164 17 26 chr12 28531371 28531603 -115750886 + L1MB1 LINE L1 5689 5922 -246 692 163 32 8 chr12 28531603 28531726 -115750763 + FLAM_C SINE Alu 1 126 -7 6507 164 17 26 chr12 28531726 28532004 -115750485 + L1MB1 LINE L1 5922 6165 -3 260 373 45 70 chr12 28532276 28532520 -115749969 - L2 LINE L2 -2 3270 3033 386 259 76 70 chr12 28533021 28533206 -115749283 + MER5A DNA MER1_type 1 186 -3 576 229 21 42 chr12 28533216 28533360 -115749129 + MER5B DNA MER1_type 36 176 -2 409 329 161 0 chr12 28533370 28533525 -115748964 - MER5A DNA MER1_type 0 189 10 205 162 0 0 chr12 28534002 28534039 -115748450 + (CA)n Simple_repeat Simple_repeat 1 37 0 1917 154 112 30 chr12 28534047 28534429 -115748060 + MLT2C2 LTR ERVL 1 423 -41 222 37 0 0 chr12 28534429 28534456 -115748033 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 1917 154 112 30 chr12 28534456 28534502 -115747987 + MLT2C2 LTR ERVL 423 464 0 680 305 68 54 chr12 28534666 28535092 -115747397 + L2 LINE L2 2882 3313 0 183 333 25 25 chr12 28535124 28535205 -115747284 - MER5A DNA MER1_type -26 163 83 284 328 15 45 chr12 28535344 28535481 -115747008 + MER5B DNA MER1_type 36 179 -10 561 321 100 6 chr12 28535622 28535961 -115746528 - MLT1L LTR MaLR -26 589 219 308 24 0 24 chr12 28536315 28536357 -115746132 + (TG)n Simple_repeat Simple_repeat 2 42 0 2123 123 3 23 chr12 28536610 28536919 -115745570 + AluSx SINE Alu 1 303 -9 1681 138 190 11 chr12 28537067 28537430 -115745059 + MSTA LTR MaLR 1 428 0 3581 87 47 2 chr12 28539679 28540209 -115742280 - MER41A LTR ERV1 0 554 1 370 364 87 18 chr12 28540623 28540909 -115741580 + L2 LINE L2 2656 2961 -353 199 317 67 94 chr12 28541004 28541184 -115741305 + L2 LINE L2 3090 3264 -8 23 0 0 0 chr12 28541237 28541260 -115741229 + AT_rich Low_complexity Low_complexity 1 23 0 316 93 0 173 chr12 28541287 28541362 -115741127 - MER33 DNA MER1_type -1 362 301 372 199 286 19 chr12 28541441 28541647 -115740842 - L1MEd LINE L1 -5270 849 589 27 29 0 0 chr12 28541839 28541873 -115740616 + AT_rich Low_complexity Low_complexity 1 34 0 33653 33 0 5 chr12 28541873 28546959 -115735530 - L1PA3 LINE L1 0 6155 1094 797 61 18 0 chr12 28546941 28547055 -115735434 - L1PA3 LINE L1 -6030 116 1 * 1004 211 57 8 chr12 28547156 28547421 -115735068 - MER33 DNA MER1_type -46 278 1 315 96 0 0 chr12 28547794 28547846 -115734643 + (TC)n Simple_repeat Simple_repeat 1 52 0 272 242 16 0 chr12 28548141 28548203 -115734286 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 2006 154 7 0 chr12 28548459 28548758 -115733731 + AluJb SINE Alu 1 301 -11 24 0 0 0 chr12 28548977 28549001 -115733488 + AT_rich Low_complexity Low_complexity 1 24 0 1456 190 70 18 chr12 28550499 28550883 -115731606 - L1MA7 LINE L1 -22 6269 5866 501 265 74 6 chr12 28550898 28551060 -115731429 - MIR SINE MIR -39 223 51 256 235 0 0 chr12 28551124 28551175 -115731314 - MER45 DNA AcHobo 0 1581 1531 420 216 128 0 chr12 28551306 28551408 -115731081 - MER45 DNA AcHobo -1466 115 1 271 371 48 30 chr12 28551442 28551609 -115730880 - L2 LINE L2 -62 3210 3041 198 287 57 82 chr12 28553294 28553416 -115729073 + L2 LINE L2 3139 3257 -15 228 67 0 0 chr12 28553445 28553475 -115729014 + (A)n Simple_repeat Simple_repeat 1 30 0 355 282 83 88 chr12 28555490 28555887 -115726602 + L2 LINE L2 2166 2560 -754 204 300 100 0 chr12 28555935 28555995 -115726494 + L2 LINE L2 3136 3201 -71 1205 235 74 60 chr12 28556039 28556542 -115725947 - MLT1H LTR MaLR -3 546 37 361 276 62 100 chr12 28556642 28556852 -115725637 + MIR3 SINE MIR 2 203 -5 1436 188 0 85 chr12 28558748 28558938 -115723551 - AluJb SINE Alu 0 312 162 414 0 0 0 chr12 28558938 28558984 -115723505 + (TA)n Simple_repeat Simple_repeat 2 47 0 1436 188 0 85 chr12 28558984 28559133 -115723356 - AluJb SINE Alu -150 162 2 201 301 24 48 chr12 28559432 28559515 -115722974 - L2 LINE L2 -1 3271 3191 286 344 151 5 chr12 28559871 28560057 -115722432 + MIR SINE MIR 6 218 -44 1094 190 35 0 chr12 28560243 28560443 -115722046 - AluJb SINE Alu -19 293 87 840 307 43 0 chr12 28561455 28561686 -115720803 + MIR SINE MIR 22 262 0 1872 197 42 50 chr12 28561707 28561828 -115720661 - MLT1F1 LTR MaLR -3 564 444 2735 131 21 0 chr12 28561828 28562247 -115720242 - MSTA LTR MaLR 0 428 1 1872 197 42 50 chr12 28562247 28562674 -115719815 - MLT1F1 LTR MaLR -123 444 25 2114 145 0 0 chr12 28563645 28563948 -115718541 - AluJo SINE Alu -9 303 1 220 308 103 65 chr12 28564430 28564478 -115718011 - L2 LINE L2 -76 3196 3151 1970 129 7 20 chr12 28564478 28564773 -115717716 + AluSx SINE Alu 1 291 -21 220 308 103 65 chr12 28564773 28565039 -115717450 - L2 LINE L2 -121 3151 2870 285 284 42 67 chr12 28565039 28565256 -115717233 + MIR SINE MIR 4 218 -44 225 0 0 0 chr12 28565395 28565420 -115717069 + (TC)n Simple_repeat Simple_repeat 2 26 0 310 300 0 0 chr12 28566688 28566768 -115715721 - L2 LINE L2 -1 3312 3233 391 241 166 14 chr12 28566816 28566961 -115715528 - MIR SINE MIR -84 178 12 22 70 0 0 chr12 28567917 28567960 -115714529 + AT_rich Low_complexity Low_complexity 1 43 0 205 342 42 25 chr12 28568738 28568858 -115713631 + MIR SINE MIR 20 141 -67 510 280 164 0 chr12 28568901 28569108 -115713381 + MIR SINE MIR 8 248 -14 4542 94 3 11 chr12 28569117 28569758 -115712731 + L1PA11 LINE L1 5535 6170 -4 2383 74 0 0 chr12 28569768 28570065 -115712424 + AluY SINE Alu 1 297 -14 2396 76 3 7 chr12 28570634 28570938 -115711551 - AluSc SINE Alu -6 303 1 328 273 36 27 chr12 28571275 28571385 -115711104 - MER81 DNA DNA -2 112 2 278 192 0 0 chr12 28571478 28571530 -115710959 + MER94 DNA DNA 4 55 -79 350 215 65 11 chr12 28573035 28573128 -115709361 - MIR SINE MIR -24 238 141 339 326 0 11 chr12 28573195 28573287 -115709202 + MER81 DNA DNA 18 108 -6 243 357 0 0 chr12 28573295 28573365 -115709124 - MIR SINE MIR -191 71 2 600 296 154 22 chr12 28573905 28574223 -115708266 - L3 LINE CR1 -63 1514 1155 2234 112 3 0 chr12 28575022 28575317 -115707172 + AluSx SINE Alu 2 297 -15 2113 181 3 5 chr12 28575922 28576309 -115706180 - MLT1B LTR MaLR -4 386 1 282 292 200 8 chr12 28578085 28578215 -115704274 - MIR SINE MIR -57 205 51 1922 104 4 0 chr12 28578247 28578498 -115703991 + AluSx SINE Alu 1 252 -60 1551 201 87 14 chr12 28579947 28580316 -115702173 - MSTD LTR MaLR 0 396 1 304 267 17 52 chr12 28580552 28580668 -115701821 + MIR SINE MIR 145 256 -6 725 137 8 0 chr12 28581185 28581309 -115701180 - L1P LINE L1 -1369 4777 4653 22 99 0 0 chr12 28582069 28582140 -115700349 + AT_rich Low_complexity Low_complexity 1 71 0 510 17 0 0 chr12 28582371 28582430 -115700059 + (CA)n Simple_repeat Simple_repeat 2 60 0 5473 55 0 7 chr12 28582558 28583255 -115699234 - L1PA8 LINE L1 0 6172 5481 289 277 22 36 chr12 28583324 28583461 -115699028 + L1ME LINE L1 5529 5663 -458 8599 174 13 10 chr12 28583479 28585136 -115697353 - L1P LINE L1 -1126 5020 3360 5955 121 20 5 chr12 28585134 28586072 -115696417 + L1PA15 LINE L1 5217 6165 0 * 27 0 0 0 chr12 28586179 28586206 -115696283 + AT_rich Low_complexity Low_complexity 1 27 0 306 0 0 0 chr12 28586689 28586723 -115695766 + (CAA)n Simple_repeat Simple_repeat 1 34 0 190 378 157 16 chr12 28586953 28587138 -115695351 - L2 LINE L2 -192 3080 2870 2264 117 0 0 chr12 28587242 28587542 -115694947 + AluSq SINE Alu 1 300 -13 317 329 25 68 chr12 28587880 28588041 -115694448 + L3 LINE CR1 1383 1536 -41 438 269 108 7 chr12 28591420 28591592 -115690897 - MIR SINE MIR -59 203 23 21 0 0 0 chr12 28591858 28591879 -115690610 + AT_rich Low_complexity Low_complexity 1 21 0 1645 130 11 115 chr12 28592822 28593169 -115689320 - AluSx SINE Alu -1 311 1 482 219 48 9 chr12 28593520 28593625 -115688864 + L2 LINE L2 3205 3313 0 362 185 0 22 chr12 28593869 28593961 -115688528 + CT-rich Low_complexity Low_complexity 3 92 0 1110 161 5 21 chr12 28593997 28594183 -115688306 - AluJb SINE Alu -36 276 94 207 0 0 0 chr12 28594605 28594628 -115687861 + (CA)n Simple_repeat Simple_repeat 2 24 0 288 111 0 0 chr12 28594635 28594680 -115687809 + (GA)n Simple_repeat Simple_repeat 2 46 0 464 299 101 10 chr12 28594724 28594931 -115687558 + MIR SINE MIR 20 245 -17 2384 83 0 10 chr12 28595005 28595318 -115687171 - AluSg SINE Alu 0 310 1 303 217 61 26 chr12 28596276 28596391 -115686098 + LTR67 LTR ERVL 439 557 0 21 0 0 0 chr12 28596670 28596691 -115685798 + AT_rich Low_complexity Low_complexity 1 21 0 924 264 66 14 chr12 28597819 28598167 -115684322 - L1MC4 LINE L1 -124 7918 7553 246 214 107 0 chr12 28599131 28599187 -115683302 + MIR SINE MIR 93 154 -108 2329 83 3 10 chr12 28599517 28599818 -115682671 - AluSg SINE Alu -11 299 1 213 291 174 0 chr12 28602354 28602440 -115680049 - MIR3 SINE MIR -7 201 101 395 171 0 0 chr12 28602947 28603017 -115679472 - MER116 DNA Mariner -7 73 4 1384 304 30 24 chr12 28605993 28606500 -115675989 + L1MA8 LINE L1 1 510 -5771 14390 197 49 15 chr12 28606515 28609321 -115673168 + L1MA8 LINE L1 863 3573 -2922 1646 179 26 13 chr12 28609321 28609623 -115672866 - AluJb SINE Alu -6 306 1 14390 197 49 15 chr12 28609623 28612597 -115669892 + L1MA8 LINE L1 3573 6493 -2 23 68 0 0 chr12 28612598 28612642 -115669847 + AT_rich Low_complexity Low_complexity 1 44 0 362 271 245 0 chr12 28612814 28612965 -115669524 + MIR SINE MIR 2 189 -73 1678 178 15 109 chr12 28613759 28614164 -115668325 + MLT1E1 LTR MaLR 288 654 0 677 171 8 0 chr12 28614168 28614297 -115668192 - L1 LINE L1 -2604 3542 3413 7679 175 43 22 chr12 28614297 28615241 -115667248 + L1MB1 LINE L1 3506 4429 -1760 2217 105 0 19 chr12 28615241 28615554 -115666935 + AluY SINE Alu 1 307 -4 7679 175 43 22 chr12 28615554 28617215 -115665274 + L1MB1 LINE L1 4429 6172 -17 647 270 12 0 chr12 28617373 28617536 -115664953 - MLT2E LTR ERVL -22 606 442 1145 235 62 19 chr12 28617642 28618012 -115664477 - L1ME1 LINE L1 -8 6158 5773 22 70 0 0 chr12 28618015 28618058 -115664431 + AT_rich Low_complexity Low_complexity 1 43 0 482 184 0 0 chr12 28618135 28618233 -115664256 - L1M4 LINE L1 -1949 4197 4100 3305 290 25 19 chr12 28618291 28619311 -115663178 - ERVL LTR ERVL -2879 2885 1860 2014 181 83 5 chr12 28619409 28619807 -115662682 + MSTB1 LTR MaLR 4 432 0 695 219 115 89 chr12 28620121 28620504 -115661985 - MER34B LTR ERV1 -159 406 14 185 305 126 0 chr12 28620690 28620785 -115661704 + L2 LINE L2 3200 3306 -7 195 305 17 17 chr12 28621646 28621705 -115660784 + L2 LINE L2 3158 3216 -56 747 194 62 0 chr12 28621910 28622054 -115660435 + FRAM SINE Alu 11 163 -13 254 181 63 110 chr12 28622113 28622224 -115660265 - HAL1b LINE L1 -437 911 805 1726 124 109 29 chr12 28622224 28622571 -115659918 - THE1C LTR MaLR 0 375 1 254 181 63 110 chr12 28622571 28622586 -115659903 - HAL1b LINE L1 -543 805 791 410 315 11 14 chr12 28623496 28623657 -115658832 + MIR SINE MIR 19 178 -62 514 210 464 0 chr12 28623687 28623935 -115658554 + L2 LINE L2 2328 2690 -624 839 284 66 49 chr12 28624165 28624514 -115657975 + L2 LINE L2 2959 3313 0 223 246 51 68 chr12 28626720 28626838 -115655651 - MIR SINE MIR -56 206 91 22 0 0 0 chr12 28628466 28628488 -115654001 + AT_rich Low_complexity Low_complexity 1 22 0 212 336 61 23 chr12 28629792 28629923 -115652566 - MIR SINE MIR 0 262 127 788 282 60 0 chr12 28629984 28630200 -115652289 + MIR SINE MIR 2 230 -32 234 105 0 0 chr12 28630219 28630257 -115652232 + (TTA)n Simple_repeat Simple_repeat 1 38 0 200 224 15 0 chr12 28630778 28630845 -115651644 + (TA)n Simple_repeat Simple_repeat 2 69 0 798 283 128 8 chr12 28632142 28632524 -115649965 + MLT1J LTR MaLR 65 492 -19 260 300 0 0 chr12 28632665 28632725 -115649764 + L2 LINE L2 3200 3259 -54 834 136 14 4 chr12 28632866 28633150 -115649339 + CT-rich Low_complexity Low_complexity 1 287 0 502 201 187 22 chr12 28633150 28633289 -115649200 - FRAM SINE Alu -16 160 1 804 325 16 0 chr12 28633289 28633541 -115648948 - MIR SINE MIR -5 257 2 445 200 92 46 chr12 28634167 28634297 -115648192 + MER63A DNA MER1_type 75 210 0 2202 110 0 7 chr12 28634460 28634761 -115647728 - AluSx SINE Alu -13 299 1 204 67 0 0 chr12 28635466 28635496 -115646993 + (T)n Simple_repeat Simple_repeat 1 30 0 396 321 34 83 chr12 28637427 28637692 -115644797 + MIR SINE MIR 10 261 -1 2152 120 35 41 chr12 28638110 28638476 -115644013 - THE1B LTR MaLR 0 364 1 292 243 138 59 chr12 28640530 28640682 -115641807 + MER5B DNA MER1_type 1 164 -14 6957 35 0 4 chr12 28640743 28641576 -115640913 + L1PA3 LINE L1 5326 6155 0 255 336 116 6 chr12 28641638 28641791 -115640698 - MIR SINE MIR -40 168 38 2435 159 26 9 chr12 28641946 28642367 -115640122 - MSTA LTR MaLR 0 428 1 45 19 0 0 chr12 28642661 28642713 -115639776 + AT_rich Low_complexity Low_complexity 1 52 0 211 220 0 20 chr12 28644028 28644078 -115638411 - L2 LINE L2 0 3272 3224 637 222 38 70 chr12 28644379 28644564 -115637925 - MER91B DNA MER1_type -10 180 2 23 0 0 0 chr12 28645010 28645033 -115637456 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr12 28646123 28646163 -115636326 + AT_rich Low_complexity Low_complexity 1 40 0 5206 146 28 9 chr12 28646316 28647560 -115634929 + L1PB4 LINE L1 4885 6153 -3 570 322 45 66 chr12 28650155 28650534 -115631955 + HAL1b LINE L1 12 382 -966 1212 276 72 7 chr12 28650876 28651333 -115631156 + L1MC4a LINE L1 5382 5868 -1940 355 288 41 0 chr12 28651629 28651775 -115630714 + L1ME3 LINE L1 2262 2413 -3733 410 301 6 25 chr12 28651884 28652047 -115630442 + L1ME3 LINE L1 2644 2803 -3343 431 38 0 0 chr12 28652048 28652101 -115630388 - MADE1 DNA Mariner -17 63 11 413 57 0 0 chr12 28652095 28652148 -115630341 - MADE1 DNA Mariner -27 53 1 * 581 267 131 64 chr12 28652227 28652828 -115629661 + L1ME3 LINE L1 2921 3607 -2539 1721 99 5 0 chr12 28652828 28653049 -115629440 + AluSp SINE Alu 1 222 -91 581 267 131 64 chr12 28653049 28653345 -115629144 + L1ME3 LINE L1 3607 3881 -2265 833 288 49 98 chr12 28653381 28653971 -115628518 - L2 LINE L2 0 3313 2739 1689 174 11 0 chr12 28653971 28654258 -115628231 - AluJo SINE Alu -18 294 5 833 288 49 98 chr12 28654258 28654454 -115628035 - L2 LINE L2 -574 2739 2535 1717 240 60 31 chr12 28654468 28654948 -115627541 - MLT2B1 LTR ERVL 0 520 27 1186 290 87 27 chr12 28655035 28656719 -115625770 + L1ME3 LINE L1 4079 5932 -230 4699 132 22 8 chr12 28657015 28657923 -115624566 + L1MA1 LINE L1 5122 6039 -263 295 279 142 46 chr12 28658133 28658330 -115624159 + MARNA DNA Mariner 171 386 -200 180 0 0 0 chr12 28658330 28658350 -115624139 + (A)n Simple_repeat Simple_repeat 1 20 0 3676 148 34 14 chr12 28659226 28659362 -115623127 + L1MB3 LINE L1 5463 5595 -588 2490 57 0 3 chr12 28659362 28659662 -115622827 + AluY SINE Alu 1 299 -12 3676 148 34 14 chr12 28659662 28660228 -115622261 + L1MB3 LINE L1 5595 6179 -4 2278 106 137 8 chr12 28663274 28663653 -115618836 - MSTA LTR MaLR 0 428 1 3988 127 55 13 chr12 28665389 28666100 -115616389 - L1MC1 LINE L1 0 6333 5593 259 247 0 45 chr12 28666101 28666190 -115616299 - L1M4 LINE L1 -1834 4312 4228 536 345 42 71 chr12 28666190 28666526 -115615963 - L2 LINE L2 -28 3244 2919 751 275 170 31 chr12 28666561 28666943 -115615546 + LTR16A LTR ERVL 1 435 -15 1246 266 141 16 chr12 28666957 28667405 -115615084 + HERV16 LTR ERVL 2 505 -4491 1229 311 45 13 chr12 28667402 28667872 -115614617 + HERV16 LTR ERVL 1084 1568 -3428 * 689 255 27 27 chr12 28667943 28668111 -115614378 + HERV16 LTR ERVL 1719 1889 -3107 1422 143 124 70 chr12 28668111 28668467 -115614022 + THE1C LTR MaLR 1 375 0 689 255 27 27 chr12 28668467 28668486 -115614003 + HERV16 LTR ERVL 1888 1906 -3090 403 241 0 0 chr12 28668614 28668693 -115613796 + MER58B DNA MER1_type 261 339 -2 714 310 47 40 chr12 28668693 28668990 -115613499 + HERV16 LTR ERVL 2319 2617 -2379 1517 275 33 26 chr12 28669068 28669559 -115612930 + MLT1J LTR MaLR 18 511 0 187 250 36 80 chr12 28669575 28669687 -115612802 - L2 LINE L2 -919 2395 2289 534 113 0 0 chr12 28671100 28671180 -115611309 - AluSp/q SINE Alu -14 299 220 989 233 88 91 chr12 28671180 28671604 -115610885 + MLT1G3 LTR MaLR 138 555 0 772 308 47 44 chr12 28671609 28672226 -115610263 - L1M4 LINE L1 -2051 4095 3477 5186 153 20 34 chr12 28672542 28672866 -115609623 - MER54A LTR ERVL 0 901 574 2538 122 25 37 chr12 28672866 28673299 -115609190 - MSTA LTR MaLR 0 428 1 5186 153 20 34 chr12 28673299 28673888 -115608601 - MER54A LTR ERVL -327 574 1 2094 147 0 6 chr12 28673959 28674273 -115608216 - AluSx SINE Alu 0 312 1 2913 160 51 74 chr12 28674273 28675110 -115607379 - MER57B-int LTR ERV1 -3384 4153 3336 364 107 36 0 chr12 28675087 28675143 -115607346 - MER57B-int LTR ERV1 -3722 2224 2167 * 730 136 0 8 chr12 28675139 28675257 -115607232 - MER57B-int LTR ERV1 -3929 2017 1901 572 176 14 47 chr12 28675260 28675408 -115607081 - MER57B-int LTR ERV1 -5183 2354 2212 * 4699 148 17 16 chr12 28675392 28676751 -115605738 - MER57B-int LTR ERV1 -5061 885 1 2762 114 21 7 chr12 28676751 28677179 -115605310 - MER57B LTR ERV1 0 434 1 271 278 56 69 chr12 28677374 28677518 -115604971 - L2 LINE L2 -4 3309 3168 3039 192 82 2 chr12 28677519 28678107 -115604382 + ERVL-B1 LTR ERVL 559 1193 -4571 * 7487 160 60 14 chr12 28678105 28679431 -115603058 + ERVL-B1 LTR ERVL 4359 5745 -19 1676 238 46 54 chr12 28679432 28679954 -115602535 + MLT2B1 LTR ERVL 1 518 -2 356 243 56 0 chr12 28681497 28681601 -115600888 + L1ME LINE L1 5723 5819 -347 2970 217 103 13 chr12 28683013 28683239 -115599250 - L1ME1 LINE L1 -32 6203 5999 399 73 0 0 chr12 28683239 28683294 -115599195 + (TG)n Simple_repeat Simple_repeat 2 56 0 2970 217 103 13 chr12 28683294 28683970 -115598519 - L1ME1 LINE L1 -236 5999 5219 292 62 25 173 chr12 28683964 28684012 -115598477 - L1MB3 LINE L1 -2 6181 6148 * 2190 109 0 7 chr12 28684012 28684316 -115598173 - AluY SINE Alu -9 302 1 292 62 25 173 chr12 28684316 28684348 -115598141 - L1MB3 LINE L1 -35 6148 6113 1355 259 76 15 chr12 28684360 28684808 -115597681 - L1ME1 LINE L1 -3686 2529 2042 207 0 0 0 chr12 28684808 28684831 -115597658 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1355 259 76 15 chr12 28684831 28685036 -115597453 - L1ME1 LINE L1 -4173 2042 1851 542 304 19 5 chr12 28685040 28685247 -115597242 - L1ME1 LINE L1 -4578 1818 1609 213 277 0 0 chr12 28686628 28686675 -115595814 - L2 LINE L2 -2 3311 3265 955 325 92 43 chr12 28686846 28687685 -115594804 - L2 LINE L2 -237 3035 2142 765 162 95 62 chr12 28687685 28687810 -115594679 + AluJo SINE Alu 29 163 -149 2531 106 6 3 chr12 28687810 28688170 -115594319 + THE1B LTR MaLR 1 361 -3 765 162 95 62 chr12 28688170 28688223 -115594266 + AluJo SINE Alu 163 213 -99 573 74 42 0 chr12 28688259 28688354 -115594135 + GA-rich Low_complexity Low_complexity 1 99 0 278 323 122 44 chr12 28688428 28688747 -115593742 - L2 LINE L2 -1217 2097 1754 420 153 0 31 chr12 28688754 28688852 -115593637 + CT-rich Low_complexity Low_complexity 3 97 0 2382 96 0 3 chr12 28689247 28689560 -115592929 - AluSx SINE Alu 0 312 1 2458 224 29 80 chr12 28690298 28691028 -115591461 - LTR8 LTR ERV1 0 691 2 4248 174 46 43 chr12 28691552 28693233 -115589256 - L1MA9 LINE L1 -40 6272 4590 924 166 43 0 chr12 28693252 28693415 -115589074 - L1PB4 LINE L1 -13 6143 5974 306 197 0 0 chr12 28693417 28693478 -115589011 - L1MC4 LINE L1 -1346 6696 6636 4788 37 0 0 chr12 28693481 28694042 -115588447 - L1PA5 LINE L1 -14 6140 5580 3977 152 25 6 chr12 28694044 28695076 -115587413 - L1PB4 LINE L1 -174 5982 4934 216 310 161 29 chr12 28695855 28696029 -115586460 - L2 LINE L2 -564 2750 2554 23 0 0 0 chr12 28697255 28697278 -115585211 + AT_rich Low_complexity Low_complexity 1 23 0 1362 164 96 14 chr12 28697662 28698094 -115584395 + LTR54 LTR ERV1 3 497 -1 29 0 0 0 chr12 28699720 28699749 -115582740 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr12 28699756 28699784 -115582705 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 24 67 0 0 chr12 28699851 28699896 -115582593 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr12 28699921 28699946 -115582543 + AT_rich Low_complexity Low_complexity 1 25 0 28 61 0 0 chr12 28700776 28700825 -115581664 + AT_rich Low_complexity Low_complexity 1 49 0 30 27 0 0 chr12 28701471 28701508 -115580981 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr12 28702467 28702501 -115579988 + AT_rich Low_complexity Low_complexity 1 34 0 2364 42 3 7 chr12 28702941 28703228 -115579261 + AluY SINE Alu 1 286 -25 37 0 0 0 chr12 28703228 28703265 -115579224 + AT_rich Low_complexity Low_complexity 1 37 0 203 275 72 29 chr12 28703314 28703383 -115579106 - L2 LINE L2 0 3313 3242 571 233 54 83 chr12 28703496 28703736 -115578753 + L1ME3A LINE L1 5928 6160 -10 301 327 163 42 chr12 28703833 28704313 -115578176 + L2 LINE L2 1826 2363 -951 2279 104 0 16 chr12 28705368 28705685 -115576804 + AluSq SINE Alu 1 312 -1 260 339 81 5 chr12 28705933 28706119 -115576370 - L1ME LINE L1 -393 5728 5529 2072 132 0 0 chr12 28706137 28706425 -115576064 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr12 28706428 28706453 -115576036 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 305 327 42 24 chr12 28706578 28706743 -115575746 - HAL1b LINE L1 -554 794 627 292 306 12 0 chr12 28706968 28707053 -115575436 - HAL1b LINE L1 -758 590 505 798 196 14 0 chr12 28707299 28707442 -115575047 + FRAM SINE Alu 11 155 -21 23 33 0 0 chr12 28708068 28708098 -115574391 + AT_rich Low_complexity Low_complexity 1 30 0 762 184 8 0 chr12 28708127 28708252 -115574237 + AluJo/FLAM SINE Alu 5 130 -172 1441 186 10 44 chr12 28708253 28708549 -115573940 + AluJo SINE Alu 1 286 -26 202 146 24 0 chr12 28708556 28708597 -115573892 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 21 71 0 0 chr12 28708940 28708982 -115573507 + AT_rich Low_complexity Low_complexity 1 42 0 400 256 8 45 chr12 28709646 28709779 -115572710 + L1M3 LINE L1 4527 4654 -1492 669 133 0 19 chr12 28709780 28709917 -115572572 + FRAM SINE Alu 58 176 0 3033 176 32 23 chr12 28709917 28710234 -115572255 + L1M3 LINE L1 4648 4961 -1219 1490 158 93 91 chr12 28710234 28710665 -115571824 + MSTB1 LTR MaLR 1 432 0 3033 176 32 23 chr12 28710665 28711200 -115571289 + L1M3 LINE L1 4961 5508 -672 231 286 91 0 chr12 28711430 28711507 -115570982 + MER91C DNA MER1_type 35 118 -22 21 0 0 0 chr12 28711779 28711800 -115570689 + AT_rich Low_complexity Low_complexity 1 21 0 1691 167 65 3 chr12 28711802 28712095 -115570394 + AluSx SINE Alu 1 311 -1 3723 185 101 61 chr12 28712295 28713211 -115569278 + Tigger3b DNA MER2_type 1 977 -2051 2143 122 0 3 chr12 28713211 28713505 -115568984 - AluSx SINE Alu -19 293 1 3723 185 101 61 chr12 28713505 28713771 -115568718 + Tigger3b DNA MER2_type 977 1231 0 303 223 68 10 chr12 28714788 28714891 -115567598 - L1ME4a LINE L1 -16 6105 5997 313 301 124 13 chr12 28715323 28715476 -115567013 + MIR SINE MIR 90 259 -3 30 27 0 0 chr12 28717180 28717217 -115565272 + AT_rich Low_complexity Low_complexity 1 37 0 1753 117 23 0 chr12 28718843 28719099 -115563390 - AluSg SINE Alu -4 306 45 998 171 6 0 chr12 28719346 28719504 -115562985 + FRAM SINE Alu 1 158 -18 202 262 0 95 chr12 28719505 28719589 -115562900 + L2 LINE L2 3194 3269 -3 212 0 36 0 chr12 28719649 28719677 -115562812 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 184 42 0 0 chr12 28721093 28721117 -115561372 + (TTA)n Simple_repeat Simple_repeat 2 180 0 333 167 0 0 chr12 28721117 28721165 -115561324 - AluJo SINE Alu -20 282 235 851 226 6 0 chr12 28721170 28721338 -115561151 - AluJo SINE Alu -143 169 1 692 137 59 65 chr12 28721338 28721486 -115561003 - L1MC2 LINE L1 -13 6331 6185 264 221 263 11 chr12 28721486 28721581 -115560908 + MER34 LTR ERV1 1 119 -423 1255 196 70 42 chr12 28721588 28722008 -115560481 + MER39 LTR ERV1 80 566 -19 499 206 0 56 chr12 28722658 28722765 -115559724 + FRAM SINE Alu 1 101 -75 242 54 0 27 chr12 28722782 28722819 -115559670 + (GAA)n Simple_repeat Simple_repeat 2 37 0 320 295 0 18 chr12 28723228 28723340 -115559149 + MIR SINE MIR 86 195 -67 275 357 140 0 chr12 28723386 28723529 -115558960 + MIR SINE MIR 36 198 -64 744 218 124 25 chr12 28723601 28723803 -115558686 - MIR SINE MIR -11 251 30 212 370 76 0 chr12 28724559 28724651 -115557838 + MIR SINE MIR 50 148 -114 360 237 5 106 chr12 28724721 28724919 -115557570 + MIR SINE MIR 5 179 -63 267 277 31 0 chr12 28724923 28724988 -115557501 - MIR SINE MIR -82 180 114 197 259 0 17 chr12 28725174 28725232 -115557257 + MIR3 SINE MIR 142 198 -10 487 259 138 52 chr12 28726492 28726724 -115555765 + MIR SINE MIR 11 262 0 625 249 94 11 chr12 28727069 28727250 -115555239 + MIR SINE MIR 67 262 0 381 296 64 24 chr12 28727265 28727390 -115555099 - MIR3 SINE MIR -64 144 15 885 290 39 24 chr12 28728442 28728697 -115553792 + MIR SINE MIR 4 262 0 248 319 44 26 chr12 28728796 28728909 -115553580 - L2 LINE L2 0 3313 3199 291 290 214 15 chr12 28729017 28729148 -115553341 - MIR SINE MIR -86 176 20 434 319 19 19 chr12 28729809 28729966 -115552523 + L2 LINE L2 2293 2449 -865 452 294 18 31 chr12 28730870 28731033 -115551456 + MIR SINE MIR 76 236 -26 317 277 84 44 chr12 28731212 28731461 -115551028 - HAL1 LINE L1 -10 2497 2239 405 0 0 0 chr12 28731462 28731507 -115550982 + (CA)n Simple_repeat Simple_repeat 2 46 0 483 254 52 75 chr12 28731536 28731646 -115550843 - HAL1 LINE L1 -349 2158 2054 1633 184 13 67 chr12 28731646 28732032 -115550457 - MLT1A1 LTR MaLR 0 365 1 483 254 52 75 chr12 28732032 28732134 -115550355 - HAL1 LINE L1 -453 2054 1951 331 288 120 0 chr12 28732142 28732267 -115550222 - HAL1 LINE L1 -2367 140 1 1675 187 44 6 chr12 28732750 28733093 -115549396 - MLT1A1 LTR MaLR 0 365 10 2211 110 7 0 chr12 28733342 28733633 -115548856 - AluSx SINE Alu -19 293 1 54 49 0 0 chr12 28734759 28734841 -115547648 + AT_rich Low_complexity Low_complexity 1 82 0 251 282 8 16 chr12 28735293 28735417 -115547072 + L1M4 LINE L1 5265 5387 -759 210 271 0 0 chr12 28736709 28736757 -115545732 + T-rich Low_complexity Low_complexity 1 48 0 258 233 17 26 chr12 28736769 28736885 -115545604 + T-rich Low_complexity Low_complexity 3 117 0 8477 103 50 5 chr12 28737021 28738126 -115544363 - MER57-int LTR ERV1 -1905 5632 4447 2290 83 0 21 chr12 28738126 28738437 -115544052 - AluY SINE Alu 0 305 1 8477 103 50 5 chr12 28738437 28738743 -115543746 - MER57-int LTR ERV1 -3090 4447 4156 180 0 0 0 chr12 28738765 28738785 -115543704 + (TTC)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr12 28738903 28738924 -115543565 + GC_rich Low_complexity Low_complexity 1 21 0 201 319 0 0 chr12 28738960 28739029 -115543460 + C-rich Low_complexity Low_complexity 2 70 0 4824 112 12 1 chr12 28739857 28740646 -115541843 + L1PA16 LINE L1 5217 6013 -153 291 349 0 14 chr12 28740655 28740801 -115541688 + CT-rich Low_complexity Low_complexity 2 145 0 630 191 24 0 chr12 28740981 28741107 -115541382 + L1PA16 LINE L1 6028 6156 -10 345 222 56 23 chr12 28741966 28742088 -115540401 - MLT1K LTR MaLR -5 610 489 1551 142 68 84 chr12 28742593 28742974 -115539515 + THE1C LTR MaLR 1 375 0 228 324 0 0 chr12 28743041 28743143 -115539346 + A-rich Low_complexity Low_complexity 1 102 0 2196 103 7 0 chr12 28743189 28743480 -115539009 + AluSp SINE Alu 1 293 -20 285 219 9 76 chr12 28745184 28745289 -115537200 + LTR52 LTR ERVL 12 109 -312 1123 253 30 10 chr12 28745317 28745621 -115536868 + LTR52 LTR ERVL 112 421 0 1998 175 31 0 chr12 28745660 28746014 -115536475 + MLT1A1 LTR MaLR 1 365 0 918 181 19 0 chr12 28746129 28746289 -115536200 - AluJb SINE Alu -14 298 136 216 352 107 67 chr12 28746328 28746581 -115535908 + L2 LINE L2 2553 2815 -499 236 368 48 72 chr12 28746709 28746959 -115535530 + L2 LINE L2 2946 3189 -83 1507 128 0 0 chr12 28747101 28747335 -115535154 + L1MB8 LINE L1 5511 5744 -434 1360 159 30 4 chr12 28747338 28747602 -115534887 + L1MB8 LINE L1 5847 6117 -61 288 249 109 61 chr12 28747756 28747921 -115534568 + MIR SINE MIR 90 262 0 198 300 12 62 chr12 28748076 28748156 -115534333 - L2 LINE L2 -9 3263 3188 430 326 0 23 chr12 28748553 28748685 -115533804 + L2 LINE L2 3182 3310 -3 206 286 0 16 chr12 28749079 28749142 -115533347 - L2 LINE L2 -3 3269 3208 332 319 113 53 chr12 28749385 28749871 -115532618 - L1M2 LINE L1 -5802 1047 533 2746 196 76 37 chr12 28751833 28752382 -115530107 - L1ME1 LINE L1 -4 6660 6134 2310 111 0 0 chr12 28752382 28752689 -115529800 + AluSc SINE Alu 1 307 -2 2746 196 76 37 chr12 28752689 28753304 -115529185 - L1ME1 LINE L1 -530 6134 5445 195 42 0 0 chr12 28753304 28753328 -115529161 + (TC)n Simple_repeat Simple_repeat 2 25 0 2746 196 76 37 chr12 28753328 28753388 -115529101 - L1ME1 LINE L1 -1219 5445 5389 2093 105 0 0 chr12 28753390 28753686 -115528803 - LTR12 LTR ERV1 0 714 419 4612 104 77 65 chr12 28753686 28754502 -115527987 - LTR12 LTR ERV1 0 826 1 1506 260 87 55 chr12 28754504 28754896 -115527593 - L1ME1 LINE L1 -1247 5397 5019 1743 173 7 0 chr12 28754896 28755180 -115527309 + AluJb SINE Alu 13 298 -14 1506 260 87 55 chr12 28755180 28755746 -115526743 - L1ME1 LINE L1 -1625 5019 4409 266 295 101 0 chr12 28755738 28755887 -115526602 - L1ME4a LINE L1 -3 6118 5955 * 182 238 63 16 chr12 28756294 28756357 -115526132 - MIR3 SINE MIR -6 202 137 379 336 78 5 chr12 28756497 28756714 -115525775 - MIR SINE MIR -29 233 1 23 54 0 0 chr12 28756741 28756778 -115525711 + AT_rich Low_complexity Low_complexity 1 37 0 6170 203 61 62 chr12 28757758 28757982 -115524507 - L1ME1 LINE L1 -3942 2704 2481 1721 164 38 7 chr12 28757982 28758274 -115524215 - AluJo SINE Alu -11 301 1 6170 203 61 62 chr12 28758274 28759325 -115523164 - L1ME1 LINE L1 -4165 2481 1430 6793 68 22 43 chr12 28759325 28761065 -115521424 - SVA Other Other -590 1386 71 243 0 0 0 chr12 28761065 28761092 -115521397 + (GGGAGA)n Simple_repeat Simple_repeat 1 27 0 6170 203 61 62 chr12 28761092 28762438 -115520051 - L1ME1 LINE L1 -5214 1432 2 2415 145 51 2 chr12 28764525 28764939 -115517550 - MER57B LTR ERV1 0 434 1 972 110 8 30 chr12 28764940 28765164 -115517325 - MER57B-int LTR ERV1 -1 7536 7279 669 123 23 31 chr12 28765164 28765294 -115517195 - LTR54B LTR ERV1 -367 131 3 21359 123 53 36 chr12 28765294 28767856 -115514633 - MER57B-int LTR ERV1 -389 7148 4631 2290 83 0 21 chr12 28767856 28768167 -115514322 - AluY SINE Alu 0 305 1 21359 123 53 36 chr12 28768167 28768496 -115513993 - MER57B-int LTR ERV1 -2906 4631 4309 1869 127 55 0 chr12 28768496 28768792 -115513697 - AluSq SINE Alu 0 311 1 21359 123 53 36 chr12 28768792 28770432 -115512057 - MER57B-int LTR ERV1 -3228 4309 1550 4445 135 15 11 chr12 28770415 28771270 -115511219 - MER57B-int LTR ERV1 -5087 859 1 * 2751 114 21 7 chr12 28771270 28771698 -115510791 - MER57B LTR ERV1 0 434 1 277 278 56 69 chr12 28771893 28772037 -115510452 - L2 LINE L2 -4 3309 3168 3028 192 82 2 chr12 28772038 28772626 -115509863 + ERVL-B1 LTR ERVL 559 1193 -4571 * 7500 160 60 14 chr12 28772624 28773950 -115508539 + ERVL-B1 LTR ERVL 4359 5745 -19 1674 238 46 54 chr12 28773951 28774473 -115508016 + MLT2B1 LTR ERVL 1 518 -2 367 243 56 0 chr12 28776015 28776119 -115506370 + L1ME LINE L1 5723 5819 -347 3016 217 103 13 chr12 28777531 28777757 -115504732 - L1ME1 LINE L1 -32 6203 5999 399 73 0 0 chr12 28777757 28777812 -115504677 + (TG)n Simple_repeat Simple_repeat 2 56 0 3016 217 103 13 chr12 28777812 28778488 -115504001 - L1ME1 LINE L1 -236 5999 5219 299 62 25 173 chr12 28778482 28778530 -115503959 - L1MB3 LINE L1 -2 6181 6148 * 2286 92 0 7 chr12 28778530 28778834 -115503655 - AluY SINE Alu -9 302 1 299 62 25 173 chr12 28778834 28778866 -115503623 - L1MB3 LINE L1 -35 6148 6113 1414 259 76 15 chr12 28778878 28779326 -115503163 - L1ME1 LINE L1 -3686 2529 2042 207 0 0 0 chr12 28779326 28779349 -115503140 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1414 259 76 15 chr12 28779349 28779554 -115502935 - L1ME1 LINE L1 -4173 2042 1851 3179 286 87 18 chr12 28779558 28781116 -115501373 - L1ME1 LINE L1 -4578 1818 153 219 88 0 0 chr12 28781351 28781385 -115501104 + (TGG)n Simple_repeat Simple_repeat 2 35 0 391 340 31 19 chr12 28783988 28784150 -115498339 - MIR3 SINE MIR -29 179 16 2147 100 0 20 chr12 28784519 28784818 -115497671 - AluSq SINE Alu -20 293 1 380 328 29 23 chr12 28784823 28784994 -115497495 + MLT1L LTR MaLR 46 217 -398 395 232 86 55 chr12 28785008 28785224 -115497265 + MLT1L LTR MaLR 345 605 0 2999 143 33 133 chr12 28785604 28786399 -115496090 - L1MC3 LINE L1 -9 7776 7062 299 350 137 6 chr12 28786904 28787087 -115495402 + MIR SINE MIR 56 262 0 208 386 68 11 chr12 28787426 28787514 -115494975 + L2 LINE L2 3128 3220 -52 467 310 130 5 chr12 28787556 28787772 -115494717 - L3 LINE CR1 -82 1495 1253 482 261 32 13 chr12 28787879 28788036 -115494453 - Charlie7 DNA MER1_type -5 2607 2448 432 312 304 11 chr12 28788356 28788715 -115493774 - L2 LINE L2 0 3313 2850 279 282 19 48 chr12 28788728 28788831 -115493658 - MLT1K LTR MaLR -290 298 199 1875 149 3 3 chr12 28789691 28789986 -115492503 - AluJb SINE Alu -17 295 1 231 204 0 37 chr12 28790907 28790961 -115491528 + LTR43 LTR ERV1 100 151 -451 1233 96 48 0 chr12 28791887 28792054 -115490435 + AluSg/x SINE Alu 128 302 -10 1009 218 31 60 chr12 28792140 28792457 -115490032 - L1ME2 LINE L1 -6 6158 5851 643 144 42 0 chr12 28792993 28793111 -115489378 - L1MB3 LINE L1 -31 6152 6030 461 217 57 0 chr12 28793935 28794041 -115488448 - MLT1G LTR MaLR -7 548 437 746 247 69 52 chr12 28794085 28794376 -115488113 - MLT1G LTR MaLR -292 298 3 24 32 0 0 chr12 28795432 28795463 -115487026 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr12 28795603 28795637 -115486852 + AT_rich Low_complexity Low_complexity 1 34 0 312 27 0 0 chr12 28796291 28796328 -115486161 + (CA)n Simple_repeat Simple_repeat 2 38 0 1958 197 64 37 chr12 28796343 28796830 -115485659 + MLT1D LTR MaLR 1 500 -5 515 276 103 76 chr12 28797185 28797898 -115484591 + L1MC4a LINE L1 5193 5826 -352 2119 124 3 3 chr12 28797899 28798197 -115484292 + AluSx SINE Alu 1 298 -14 238 364 68 0 chr12 28798465 28798583 -115483906 + L1ME LINE L1 5531 5656 -465 297 215 183 21 chr12 28799259 28799445 -115483044 - L1MCc LINE L1 -4887 1536 1321 2888 171 18 52 chr12 28799657 28800287 -115482202 - L1MD1 LINE L1 -314 5928 5321 427 226 0 0 chr12 28800291 28800375 -115482114 + L1M4 LINE L1 2676 2759 -3387 236 250 33 0 chr12 28800367 28800427 -115482062 - L1MD1 LINE L1 -2511 3635 3574 * 465 265 58 12 chr12 28800611 28800775 -115481714 - L1P4 LINE L1 -388 5773 5601 2191 112 3 6 chr12 28800777 28801089 -115481400 + AluSx SINE Alu 2 312 0 5138 153 20 34 chr12 28801160 28801749 -115480740 + MER54A LTR ERVL 1 574 -327 2503 122 25 37 chr12 28801749 28802182 -115480307 + MSTA LTR MaLR 1 428 0 5138 153 20 34 chr12 28802182 28802506 -115479983 + MER54A LTR ERVL 574 901 0 825 308 47 44 chr12 28802822 28803439 -115479050 + L1ME3A LINE L1 3477 4095 -2051 987 233 88 91 chr12 28803444 28803868 -115478621 - MLT1G3 LTR MaLR 0 530 138 589 88 0 0 chr12 28803868 28803948 -115478541 + AluSp/q SINE Alu 220 299 -14 609 280 156 26 chr12 28804372 28805247 -115477242 + L1ME3A LINE L1 4932 5945 -225 380 273 33 8 chr12 28806027 28806148 -115476341 - MIR3 SINE MIR -3 205 82 1425 320 138 34 chr12 28806191 28806260 -115476229 - L2 LINE L2 -468 2846 2786 2381 76 0 0 chr12 28806260 28806562 -115475927 + AluY SINE Alu 1 302 -9 1425 320 138 34 chr12 28806562 28806796 -115475693 - L2 LINE L2 -528 2786 2578 2174 134 3 18 chr12 28806796 28807138 -115475351 - MER1B DNA MER1_type 0 337 1 1425 320 138 34 chr12 28807138 28808315 -115474174 - L2 LINE L2 -736 2578 1211 257 295 9 48 chr12 28809770 28809875 -115472614 - L2 LINE L2 -3 3310 3210 324 0 0 0 chr12 28810015 28810051 -115472438 + (TG)n Simple_repeat Simple_repeat 2 37 0 3366 235 97 52 chr12 28810715 28811896 -115470593 - HAL1 LINE L1 -469 2038 770 877 245 43 12 chr12 28811896 28812149 -115470340 - MIR SINE MIR 0 262 2 3366 235 97 52 chr12 28812149 28812510 -115469979 - HAL1 LINE L1 -1737 770 427 23 0 0 0 chr12 28813606 28813629 -115468860 + AT_rich Low_complexity Low_complexity 1 23 0 2127 99 7 14 chr12 28813834 28814128 -115468361 - AluSq SINE Alu -12 301 10 552 146 0 0 chr12 28815181 28815277 -115467212 - L1PA13 LINE L1 -6 6157 6062 221 316 0 25 chr12 28816917 28816996 -115465493 + MIR SINE MIR 17 93 -115 21 0 0 0 chr12 28818158 28818179 -115464310 + AT_rich Low_complexity Low_complexity 1 21 0 37 52 0 0 chr12 28818895 28818953 -115463536 + AT_rich Low_complexity Low_complexity 1 58 0 209 330 113 10 chr12 28819112 28819209 -115463280 - L2 LINE L2 -2 3311 3205 330 316 14 36 chr12 28819683 28819822 -115462667 + L2 LINE L2 3177 3312 -1 209 308 236 25 chr12 28820144 28820660 -115461829 - L2 LINE L2 -825 2489 1865 207 114 0 0 chr12 28820887 28820922 -115461567 + (CA)n Simple_repeat Simple_repeat 1 35 0 496 63 0 38 chr12 28822294 28822373 -115460116 - L1MB2 LINE L1 -2 6169 6094 2153 141 35 1 chr12 28822380 28822748 -115459741 - L1MB3 LINE L1 -143 6040 5658 30 0 0 0 chr12 28823410 28823440 -115459049 + AT_rich Low_complexity Low_complexity 1 30 0 273 197 0 0 chr12 28823573 28823639 -115458850 + (TA)n Simple_repeat Simple_repeat 1 66 0 321 47 0 0 chr12 28823639 28823682 -115458807 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 241 0 35 chr12 28823860 28823918 -115458571 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 206 343 71 20 chr12 28825366 28825465 -115457024 + MIR3 SINE MIR 90 193 -15 349 294 117 0 chr12 28826330 28826527 -115455962 - L1MC4a LINE L1 -1902 5906 5687 225 146 66 0 chr12 28826731 28826868 -115455621 + (TA)n Simple_repeat Simple_repeat 1 146 0 252 134 85 0 chr12 28826886 28826968 -115455521 + (TTAA)n Simple_repeat Simple_repeat 1 89 0 2035 119 0 3 chr12 28826977 28827263 -115455226 - AluSg SINE Alu -25 285 1 329 233 12 12 chr12 28827267 28827353 -115455136 + L1ME3A LINE L1 5782 5867 -303 294 274 80 74 chr12 28828271 28828446 -115454043 + L2 LINE L2 2486 2661 -653 36 70 0 0 chr12 28828916 28828987 -115453502 + AT_rich Low_complexity Low_complexity 1 71 0 189 336 178 9 chr12 28829628 28829735 -115452754 + L3b LINE CR1 1407 1531 -52 212 318 206 0 chr12 28829770 28829877 -115452612 - L2 LINE L2 -7 3265 3137 268 271 170 14 chr12 28830129 28830487 -115452002 - L1MEc LINE L1 -2928 3201 2788 188 153 41 31 chr12 28830735 28830833 -115451656 + (TA)n Simple_repeat Simple_repeat 1 99 0 328 298 87 80 chr12 28830859 28831171 -115451318 - L1MEc LINE L1 -4752 1558 1245 244 249 99 103 chr12 28831216 28831489 -115451000 - L1MEc LINE L1 -4910 1209 938 10682 40 0 0 chr12 28831741 28833809 -115448680 - L1PA4 LINE L1 -1 6154 4086 9597 36 0 1 chr12 28833809 28834993 -115447496 + L1PA4 LINE L1 2926 4110 -2036 216 204 20 0 chr12 28835096 28835145 -115447344 + (TATG)n Simple_repeat Simple_repeat 1 50 0 657 171 89 0 chr12 28836351 28836474 -115446015 + MER46A DNA MER2_type 2 135 -101 362 161 18 0 chr12 28836482 28836538 -115445951 + MER46A DNA MER2_type 180 236 0 228 402 31 0 chr12 28836883 28837010 -115445479 + L2 LINE L2 2919 3049 -223 356 344 0 16 chr12 28837535 28837660 -115444829 + L2 LINE L2 2847 2969 -303 528 257 86 7 chr12 28837673 28837813 -115444676 + MIR SINE MIR 40 190 -72 1489 233 7 0 chr12 28839597 28839897 -115442592 + AluJo SINE Alu 1 302 -10 1131 211 98 50 chr12 28840127 28840506 -115441983 - MLT2C1 LTR ERVL 0 397 1 2745 118 5 0 chr12 28841198 28841606 -115440883 - L1PB3 LINE L1 -186 5968 5559 * 3548 212 11 9 chr12 28841602 28842443 -115440046 - L1PB3 LINE L1 -989 5157 4316 1720 171 55 9 chr12 28842473 28842817 -115439672 - MER46B DNA MER2_type -1 235 1 2252 108 3 3 chr12 28843271 28843577 -115438912 + AluSp SINE Alu 1 306 -7 206 345 64 47 chr12 28843900 28844071 -115438418 + MIR3 SINE MIR 7 180 -28 235 325 154 5 chr12 28844793 28844966 -115437523 - MIR SINE MIR -50 212 20 16054 175 19 12 chr12 28845107 28848581 -115433908 - L1PA13 LINE L1 -3 6160 2660 2515 58 0 6 chr12 28848581 28848892 -115433597 - AluY SINE Alu -2 309 1 16054 175 19 12 chr12 28848892 28849543 -115432946 - L1PA13 LINE L1 -3503 2660 2015 9301 106 7 0 chr12 28849917 28851195 -115431294 - HSMAR1 DNA Mariner 0 1287 1 817 159 0 29 chr12 28852629 28852767 -115429722 - FRAM SINE Alu -16 160 27 1446 145 66 84 chr12 28853183 28853492 -115428997 + THE1C LTR MaLR 1 303 -72 2120 129 0 0 chr12 28853492 28853786 -115428703 - AluSq SINE Alu -19 294 1 1446 145 66 84 chr12 28853786 28853856 -115428633 + THE1C LTR MaLR 303 373 -2 906 185 165 53 chr12 28853883 28854240 -115428249 + LTR37A LTR ERV1 26 422 -4 33 0 0 0 chr12 28854419 28854452 -115428037 + AT_rich Low_complexity Low_complexity 1 33 0 211 125 42 21 chr12 28854926 28854974 -115427515 + T-rich Low_complexity Low_complexity 2 50 0 50 41 0 31 chr12 28855025 28855122 -115427367 + AT_rich Low_complexity Low_complexity 1 94 0 226 148 56 0 chr12 28855507 28855561 -115426928 + (TA)n Simple_repeat Simple_repeat 2 58 0 180 0 0 0 chr12 28857637 28857657 -115424832 + (CAA)n Simple_repeat Simple_repeat 2 21 0 538 298 74 4 chr12 28857698 28857956 -115424533 - L1ME3A LINE L1 -221 5949 5674 532 184 0 0 chr12 28858107 28858210 -115424279 - L1MC4 LINE L1 -22 8020 7918 957 213 94 63 chr12 28858241 28858655 -115423834 - L1MC4a LINE L1 -1440 6762 6336 277 179 62 131 chr12 28858651 28858796 -115423693 - L1MC4a LINE L1 -2420 5782 5648 * 1175 295 75 67 chr12 28858840 28860609 -115421880 - L1MC4a LINE L1 -859 5681 3899 22 56 0 0 chr12 28860632 28860668 -115421821 + AT_rich Low_complexity Low_complexity 1 36 0 382 280 159 35 chr12 28860800 28861089 -115421400 - L1MC4a LINE L1 -2865 3675 3351 545 324 24 19 chr12 28861237 28861450 -115421039 - MIR SINE MIR 0 262 49 380 347 163 18 chr12 28861577 28862197 -115420292 - L2 LINE L2 -865 2449 1740 262 250 26 35 chr12 28862228 28862344 -115420145 + CT-rich Low_complexity Low_complexity 2 116 0 571 231 238 16 chr12 28862578 28862776 -115419713 - MIR SINE MIR -41 221 1 2363 103 0 0 chr12 28862998 28863308 -115419181 + AluSg SINE Alu 1 310 0 221 265 24 24 chr12 28864083 28864166 -115418323 + L2 LINE L2 3205 3287 -26 1061 310 83 29 chr12 28866987 28867718 -115414771 + L2 LINE L2 2336 3174 -139 481 266 8 32 chr12 28867715 28867839 -115414650 + L2 LINE L2 2603 2723 -591 * 959 233 40 83 chr12 28868057 28868431 -115414058 + LTR37B LTR ERV1 16 373 -95 493 207 47 95 chr12 28868432 28868664 -115413825 + LTR37B LTR ERV1 244 464 -4 404 296 58 43 chr12 28868672 28868963 -115413526 + L2 LINE L2 2991 3272 0 3113 222 97 115 chr12 28869589 28870449 -115412040 - L1MC4a LINE L1 -5141 1399 440 395 258 83 8 chr12 28870449 28870581 -115411908 + LTR37B LTR ERV1 19 160 -308 3113 222 97 115 chr12 28870581 28870994 -115411495 - L1MC4a LINE L1 -6100 440 21 2380 120 34 14 chr12 28871541 28871898 -115410591 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr12 28873075 28873096 -115409393 + AT_rich Low_complexity Low_complexity 1 21 0 1936 143 7 3 chr12 28874073 28874366 -115408123 - AluSq SINE Alu -19 294 1 215 170 21 0 chr12 28875398 28875445 -115407044 + T-rich Low_complexity Low_complexity 1 48 0 225 0 0 0 chr12 28875458 28875483 -115407006 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr12 28876567 28876591 -115405898 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr12 28876934 28876960 -115405529 + AT_rich Low_complexity Low_complexity 1 26 0 1558 153 3 67 chr12 28877150 28877450 -115405039 + AluJo SINE Alu 10 290 -22 439 152 0 0 chr12 28878299 28878365 -115404124 - U4 snRNA snRNA -79 66 1 1568 151 0 16 chr12 28878383 28878635 -115403854 + MER2 DNA MER2_type 1 248 -97 810 202 30 39 chr12 28878632 28878835 -115403654 + MER2 DNA MER2_type 144 344 -1 * 468 303 136 17 chr12 28880047 28880334 -115402155 + L2 LINE L2 2992 3312 -1 1840 175 19 26 chr12 28880351 28880728 -115401761 + MLT1A2 LTR MaLR 1 374 0 202 260 10 29 chr12 28880774 28880878 -115401611 + (TA)n Simple_repeat Simple_repeat 1 102 0 465 261 92 24 chr12 28881639 28881867 -115400622 - L1ME LINE L1 -530 5591 5367 25 31 0 0 chr12 28881889 28881921 -115400568 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 28882064 28882093 -115400396 + AT_rich Low_complexity Low_complexity 1 29 0 227 263 81 0 chr12 28882137 28882236 -115400253 - L1ME LINE L1 -1088 5058 4952 290 386 21 0 chr12 28882616 28882761 -115399728 - L2 LINE L2 -235 3037 2890 205 359 100 36 chr12 28882851 28883132 -115399357 - L2 LINE L2 -560 2754 2456 333 351 199 19 chr12 28883348 28883559 -115398930 + L2 LINE L2 2554 2802 -512 * 511 242 45 15 chr12 28883558 28883690 -115398799 + MIR SINE MIR 117 252 -10 25 0 0 0 chr12 28883810 28883835 -115398654 + AT_rich Low_complexity Low_complexity 1 25 0 610 294 155 57 chr12 28884244 28884682 -115397807 - L2 LINE L2 0 3313 2833 23 0 0 0 chr12 28884770 28884793 -115397696 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr12 28885256 28885280 -115397209 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 2253 16 0 0 chr12 28885305 28885562 -115396927 - L1PA3 LINE L1 -4 6151 5895 376 241 43 46 chr12 28885915 28886023 -115396466 - MER41E LTR ERV1 -205 430 323 2811 162 40 58 chr12 28886023 28886646 -115395843 + LTR9 LTR ERV1 1 612 0 376 241 43 46 chr12 28886646 28886781 -115395708 - MER41E LTR ERV1 -312 323 54 26 0 0 0 chr12 28888360 28888386 -115394103 + AT_rich Low_complexity Low_complexity 1 26 0 7074 52 9 0 chr12 28888523 28889584 -115392905 - L1PA6 LINE L1 -5 6149 5085 180 313 0 30 chr12 28891257 28891324 -115391165 + L3 LINE CR1 1095 1159 -418 1786 218 25 17 chr12 28891610 28892014 -115390475 + MER82 DNA MER2_type 130 536 -117 2285 106 0 0 chr12 28892015 28892317 -115390172 + AluY SINE Alu 1 302 -9 568 277 8 0 chr12 28892335 28892465 -115390024 + MER82 DNA MER2_type 522 652 -1 339 85 0 0 chr12 28892942 28892989 -115389500 + (TG)n Simple_repeat Simple_repeat 2 48 0 250 216 27 0 chr12 28893885 28893985 -115388504 + (TA)n Simple_repeat Simple_repeat 1 102 0 522 127 64 3 chr12 28894001 28894333 -115388156 + (TA)n Simple_repeat Simple_repeat 1 352 0 1365 203 41 0 chr12 28894333 28894604 -115387885 - AluJb SINE Alu -27 285 4 24 32 0 0 chr12 28894612 28894643 -115387846 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 28894842 28894863 -115387626 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr12 28895745 28895801 -115386688 + AT_rich Low_complexity Low_complexity 1 56 0 598 285 116 11 chr12 28896859 28897126 -115385363 - L2 LINE L2 -6 3307 3013 791 40 0 0 chr12 28897220 28897319 -115385170 - L1PA5 LINE L1 0 6154 6056 1564 264 152 39 chr12 28897341 28897730 -115384759 - L2 LINE L2 -354 2960 2616 2362 112 0 0 chr12 28897730 28898042 -115384447 - AluSx SINE Alu 0 312 1 1564 264 152 39 chr12 28898042 28898371 -115384118 - L2 LINE L2 -698 2616 2161 910 190 87 10 chr12 28898459 28898654 -115383835 - MER2 DNA MER2_type -134 211 2 518 275 107 0 chr12 28898690 28898839 -115383650 + MIR SINE MIR 25 189 -73 221 231 15 15 chr12 28898849 28898914 -115383575 + (TA)n Simple_repeat Simple_repeat 2 66 0 1952 199 83 7 chr12 28898918 28899375 -115383114 - Charlie1b DNA MER1_type 0 523 32 849 264 29 64 chr12 28899404 28899484 -115383005 - MLT1D LTR MaLR -205 300 219 3989 155 17 61 chr12 28899484 28900305 -115382184 - LTR1 LTR ERV1 0 785 1 849 264 29 64 chr12 28900305 28900535 -115381954 - MLT1D LTR MaLR -286 219 1 1304 251 202 26 chr12 28900616 28900804 -115381685 - L2 LINE L2 -1175 2139 1986 1083 245 88 57 chr12 28900804 28901294 -115381195 + MLT1D LTR MaLR 1 505 0 1304 251 202 26 chr12 28901294 28901807 -115380682 - L2 LINE L2 -1328 1986 1314 235 164 15 15 chr12 28902069 28902136 -115380353 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 406 229 178 0 chr12 28903521 28903639 -115378850 - MIR SINE MIR -6 256 118 21 57 0 0 chr12 28903922 28903957 -115378532 + AT_rich Low_complexity Low_complexity 1 35 0 198 224 0 0 chr12 28904134 28904183 -115378306 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 357 240 78 69 chr12 28904477 28904694 -115377795 - HAL1 LINE L1 -4 2503 2285 522 295 0 0 chr12 28904719 28904868 -115377621 - HAL1 LINE L1 -302 2205 2057 2317 209 64 13 chr12 28905478 28905948 -115376541 - MER21B LTR ERV1 -364 499 6 6316 166 23 16 chr12 28905953 28907468 -115375021 - MER21B-int LTR ERV1 0 4191 2608 1924 291 93 30 chr12 28907566 28907615 -115374874 - HAL1 LINE L1 -1333 1174 1130 1891 169 0 0 chr12 28907615 28907922 -115374567 - AluJb SINE Alu -4 308 2 1924 291 93 30 chr12 28907922 28908342 -115374147 - HAL1 LINE L1 -1377 1130 738 701 265 41 0 chr12 28908342 28908512 -115373977 + MER45A DNA AcHobo 1 177 -1 1924 291 93 30 chr12 28908512 28909053 -115373436 - HAL1 LINE L1 -1769 738 86 210 71 0 0 chr12 28909053 28909081 -115373408 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1924 291 93 30 chr12 28909081 28909162 -115373327 - HAL1 LINE L1 -2421 86 12 1211 226 81 42 chr12 28909479 28909912 -115372577 - MLT1C LTR MaLR -10 457 8 1434 201 71 86 chr12 28909928 28910336 -115372153 - MLT1C-int LTR MaLR -9 1362 961 567 261 30 0 chr12 28910725 28910859 -115371630 - MLT1C-int LTR MaLR -511 860 723 3972 161 34 7 chr12 28910860 28911563 -115370926 - Tigger1 DNA MER2_type 0 2418 1697 7142 153 43 7 chr12 28911588 28912763 -115369726 - Tigger1 DNA MER2_type -1124 1294 70 1229 110 6 0 chr12 28912763 28912945 -115369544 + L1PA13 LINE L1 5962 6144 -19 7142 153 43 7 chr12 28912945 28913008 -115369481 - Tigger1 DNA MER2_type -2348 70 11 892 267 75 48 chr12 28913017 28913433 -115369056 - MLT1C LTR MaLR -40 427 1 328 322 21 14 chr12 28913880 28914023 -115368466 + CT-rich Low_complexity Low_complexity 2 145 0 393 348 0 0 chr12 28916603 28916721 -115365768 + MIR3 SINE MIR 86 203 -5 286 217 0 17 chr12 28917015 28917075 -115365414 - MIR3 SINE MIR -25 183 125 22 0 0 0 chr12 28917082 28917104 -115365385 + AT_rich Low_complexity Low_complexity 1 22 0 424 265 142 33 chr12 28917546 28917757 -115364732 - L2 LINE L2 -142 3171 2938 2353 78 0 0 chr12 28917798 28918093 -115364396 - AluSg SINE Alu -15 295 1 291 283 50 0 chr12 28918410 28918509 -115363980 + MER103 DNA DNA 11 114 -52 781 297 81 31 chr12 28918601 28919019 -115363470 + Charlie7 DNA MER1_type 7 445 -2167 356 293 42 30 chr12 28919289 28919456 -115363033 - MLT1J1 LTR MaLR -115 331 163 808 283 40 65 chr12 28919463 28919968 -115362521 - L1M4 LINE L1 -2316 4641 4150 26 0 0 0 chr12 28920057 28920083 -115362406 + AT_rich Low_complexity Low_complexity 1 26 0 2070 37 0 0 chr12 28920083 28920329 -115362160 - L1PA3 LINE L1 -3 6152 5907 350 283 84 47 chr12 28920399 28920590 -115361899 - L1MEd LINE L1 -5018 1101 904 203 170 38 94 chr12 28920954 28921007 -115361482 - MER5A DNA MER1_type 0 189 140 31 0 0 0 chr12 28921870 28921901 -115360588 + AT_rich Low_complexity Low_complexity 1 31 0 234 287 96 7 chr12 28922183 28922319 -115360170 - L1MC/D LINE L1 -1899 5909 5762 24 0 0 0 chr12 28922355 28922379 -115360110 + AT_rich Low_complexity Low_complexity 1 24 0 2446 62 20 0 chr12 28922501 28922805 -115359684 + AluY SINE Alu 1 310 -1 2231 113 0 7 chr12 28923003 28923313 -115359176 + AluSx SINE Alu 1 308 -4 233 281 124 0 chr12 28924500 28924589 -115357900 - L2 LINE L2 0 3313 3214 4741 256 100 47 chr12 28924989 28926595 -115355894 + L1MDa LINE L1 17 1729 -4811 1660 225 24 34 chr12 28926595 28927013 -115355476 + MLT2D LTR ERVL 1 414 0 4741 256 100 47 chr12 28927013 28927190 -115355299 + L1MDa LINE L1 1729 1895 -4645 1494 227 58 45 chr12 28927196 28927572 -115354917 - L1M4 LINE L1 -3327 3630 3261 1287 156 168 34 chr12 28927572 28927719 -115354770 - THE1C LTR MaLR -4 371 245 303 28 0 0 chr12 28927719 28927755 -115354734 + (GA)n Simple_repeat Simple_repeat 1 36 0 1287 156 168 34 chr12 28927755 28927934 -115354555 - THE1C LTR MaLR -130 245 1 8898 147 11 35 chr12 28927934 28929550 -115352939 - THE1C-int LTR MaLR 0 1580 3 1897 154 46 30 chr12 28929552 28929921 -115352568 - THE1C LTR MaLR 0 375 1 1494 227 58 45 chr12 28929921 28930053 -115352436 - L1M4 LINE L1 -3696 3261 3107 1972 165 18 6 chr12 28930053 28930386 -115352103 + MER1B DNA MER1_type 1 337 0 1494 227 58 45 chr12 28930386 28930453 -115352036 - L1M4 LINE L1 -3850 3107 3042 451 319 43 0 chr12 28930606 28930747 -115351742 - MER8 DNA MER2_type -87 152 6 242 239 43 22 chr12 28930752 28930844 -115351645 - L1M4 LINE L1 -4572 2387 2294 * 5029 182 24 15 chr12 28930840 28931931 -115350558 - L1 LINE L1 -1096 5050 3950 994 272 80 21 chr12 28931974 28932543 -115349946 - L1M4 LINE L1 -4726 2233 1637 347 215 43 92 chr12 28932517 28932608 -115349881 - L1M4 LINE L1 -6694 165 84 * 2050 145 16 21 chr12 28932608 28932981 -115349508 + THE1C LTR MaLR 5 375 0 347 215 43 92 chr12 28932981 28933052 -115349437 - L1M4 LINE L1 -6775 84 11 361 269 107 37 chr12 28933936 28934178 -115348311 + MIR SINE MIR 3 261 -1 207 338 8 68 chr12 28934881 28935014 -115347475 - MER5B DNA MER1_type -3 175 51 21 0 0 0 chr12 28936017 28936038 -115346451 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 28936522 28936545 -115345944 + AT_rich Low_complexity Low_complexity 1 23 0 6913 50 5 29 chr12 28938043 28939235 -115343254 + L1PA6 LINE L1 4981 6153 -1 48 0 0 0 chr12 28941176 28941224 -115341265 + AT_rich Low_complexity Low_complexity 1 48 0 181 274 274 0 chr12 28943438 28943500 -115338989 + L2 LINE L2 3235 3313 0 338 290 53 15 chr12 28944263 28944394 -115338095 - L2 LINE L2 -1 3312 3177 2144 110 0 3 chr12 28945267 28945566 -115336923 - AluSg SINE Alu -12 298 1 5927 92 14 2 chr12 28946292 28947144 -115335345 - L1PB1 LINE L1 -1 6150 5289 2169 207 15 0 chr12 28947145 28947623 -115334866 + L1 LINE L1 4124 4608 -1538 1574 238 36 7 chr12 28947622 28948034 -115334455 + L1P LINE L1 4855 5278 -868 * 21 0 0 0 chr12 28948475 28948496 -115333993 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 28948716 28948744 -115333745 + AT_rich Low_complexity Low_complexity 1 28 0 264 122 0 0 chr12 28949812 28949853 -115332636 + (T)n Simple_repeat Simple_repeat 1 41 0 887 328 70 14 chr12 28951210 28951555 -115330934 - MLT1I LTR MaLR -45 364 1 22 56 0 0 chr12 28952258 28952294 -115330195 + AT_rich Low_complexity Low_complexity 1 36 0 738 268 106 0 chr12 28952760 28952995 -115329494 + L1 LINE L1 4274 4533 -1613 2269 80 13 0 chr12 28953092 28953391 -115329098 + AluY SINE Alu 9 311 0 203 286 0 0 chr12 28953553 28953602 -115328887 - MIR3 SINE MIR -17 191 143 195 129 0 0 chr12 28953611 28953642 -115328847 + (TC)n Simple_repeat Simple_repeat 1 31 0 637 289 90 14 chr12 28953665 28953876 -115328613 + MIR SINE MIR 5 231 -31 215 347 0 0 chr12 28953932 28953981 -115328508 - MIR SINE MIR -129 79 31 1362 238 52 48 chr12 28954119 28954519 -115327970 - MER21B LTR ERV1 -58 805 404 526 199 247 32 chr12 28954525 28954755 -115327734 + MER21B LTR ERV1 42 358 -505 558 298 128 90 chr12 28955218 28955544 -115326945 - L2 LINE L2 -528 2786 2474 414 69 0 0 chr12 28955544 28955602 -115326887 + (TG)n Simple_repeat Simple_repeat 1 58 0 558 298 128 90 chr12 28955602 28956324 -115326165 - L2 LINE L2 -840 2474 1698 189 216 176 0 chr12 28956880 28956931 -115325558 + L2 LINE L2 3191 3250 -63 225 158 0 0 chr12 28957026 28957064 -115325425 - MER3 DNA MER1_type -160 49 12 1864 259 71 17 chr12 28957066 28957908 -115324581 - L1ME1 LINE L1 -152 6294 5413 606 124 52 0 chr12 28957912 28958009 -115324480 - THE1C LTR MaLR -2 373 272 2374 93 84 0 chr12 28958011 28958355 -115324134 - THE1C LTR MaLR -2 373 1 10095 100 22 67 chr12 28958360 28959240 -115323249 - THE1C-int LTR MaLR -6 1574 801 207 0 0 0 chr12 28959240 28959263 -115323226 + (CCCCCA)n Simple_repeat Simple_repeat 4 26 0 10095 100 22 67 chr12 28959263 28960030 -115322459 - THE1C-int LTR MaLR -779 801 1 2541 99 14 3 chr12 28960031 28960386 -115322103 - THE1C LTR MaLR -1 374 16 1292 134 111 20 chr12 28960393 28960646 -115321843 - THE1C LTR MaLR -99 276 1 541 243 120 60 chr12 28960649 28960966 -115321523 - L1ME1 LINE L1 -1014 5412 5077 692 242 42 0 chr12 28960966 28961131 -115321358 - MER20 DNA MER1_type -1 218 47 7153 231 52 25 chr12 28961131 28962198 -115320291 - L1ME1 LINE L1 -1589 4837 3800 1478 190 32 69 chr12 28962198 28962577 -115319912 - MLT1A1 LTR MaLR 0 365 1 7153 231 52 25 chr12 28962577 28964444 -115318045 - L1ME1 LINE L1 -2626 3800 1823 1036 60 40 20 chr12 28964983 28965133 -115317356 - L1PA11 LINE L1 -3 6171 6019 242 161 49 111 chr12 28965140 28965221 -115317268 - L1ME1 LINE L1 -4596 1830 1755 * 332 241 0 35 chr12 28965218 28965305 -115317184 - L1ME LINE L1 -473 5762 5679 2846 215 44 83 chr12 28965339 28965794 -115316695 - L1ME LINE L1 -795 5420 4948 2226 157 44 7 chr12 28965794 28966207 -115316282 + MSTA LTR MaLR 1 428 0 2846 215 44 83 chr12 28966207 28966829 -115315660 - L1ME LINE L1 -1267 4948 4386 213 94 0 0 chr12 28966833 28966865 -115315624 + (TA)n Simple_repeat Simple_repeat 2 33 0 3894 65 0 2 chr12 28966866 28967533 -115314956 - L1PA8 LINE L1 0 6172 5312 2157 129 0 0 chr12 28967533 28967842 -115314647 - AluSx SINE Alu -3 309 1 854 229 101 35 chr12 28967842 28968209 -115314280 - L1ME LINE L1 -1836 4379 3989 2437 247 52 39 chr12 28968252 28969403 -115313086 - L1MEc LINE L1 -2786 3429 2275 2080 117 0 0 chr12 28969403 28969721 -115312768 - AluSx SINE Alu 0 318 1 2437 247 52 39 chr12 28969721 28969943 -115312546 - L1MEc LINE L1 -3940 2275 2057 717 228 0 20 chr12 28970531 28970680 -115311809 + Tigger3(Golem) DNA MER2_type 2 147 -2882 * 794 90 83 14 chr12 28970652 28970797 -115311692 + Tigger3(Golem) DNA MER2_type 2041 2195 -834 * 802 138 0 0 chr12 28970793 28970916 -115311573 - MSTB2 LTR MaLR -316 141 19 1586 157 0 0 chr12 28970921 28971163 -115311326 + Tigger3(Golem) DNA MER2_type 2797 3038 0 883 116 116 7 chr12 28971226 28971373 -115311116 + MER34B LTR ERV1 1 163 -402 642 130 0 0 chr12 28971390 28971490 -115310999 - LTR12 LTR ERV1 0 714 615 282 263 34 17 chr12 28971492 28971610 -115310879 - LTR30 LTR ERV1 -79 643 524 320 85 0 0 chr12 28971697 28971744 -115310745 - LTR12 LTR ERV1 -480 234 188 242 219 137 0 chr12 28971744 28971817 -115310672 - LTR30 LTR ERV1 -639 83 1 * 2343 166 34 7 chr12 28971817 28972217 -115310272 + MER34B LTR ERV1 155 565 0 263 186 29 14 chr12 28972970 28973040 -115309449 + MLT1J1 LTR MaLR 362 432 -14 22 35 0 0 chr12 28973386 28973415 -115309074 + AT_rich Low_complexity Low_complexity 1 29 0 2348 72 14 0 chr12 28974127 28974419 -115308070 - AluSp SINE Alu -17 296 1 225 0 0 0 chr12 28974564 28974589 -115307900 + (TG)n Simple_repeat Simple_repeat 2 26 0 1597 176 103 39 chr12 28975274 28975712 -115306777 - MER31B LTR ERV1 0 466 1 25 0 0 0 chr12 28976085 28976110 -115306379 + AT_rich Low_complexity Low_complexity 1 25 0 2135 232 43 76 chr12 28976143 28976443 -115306046 - L1ME1 LINE L1 -1 6165 5857 1110 166 16 43 chr12 28976443 28976520 -115305969 - L1MA9 LINE L1 0 6312 6234 189 0 0 0 chr12 28976520 28976541 -115305948 + (TA)n Simple_repeat Simple_repeat 2 22 0 1110 166 16 43 chr12 28976541 28976716 -115305773 - L1MA9 LINE L1 -78 6234 6067 2135 232 43 76 chr12 28976716 28977152 -115305337 - L1ME1 LINE L1 -309 5857 5453 1665 209 0 0 chr12 28978654 28978956 -115303533 - AluJb SINE Alu -10 302 1 189 274 137 41 chr12 28979378 28979451 -115303038 - L2 LINE L2 -29 3243 3164 321 347 27 7 chr12 28979805 28979952 -115302537 - L1MC/D LINE L1 -2047 6179 6030 2425 117 4 80 chr12 28980109 28980570 -115301919 - L1PA15 LINE L1 -9 6156 5731 698 184 0 151 chr12 28980570 28980798 -115301691 + MLT2C1 LTR ERVL 205 397 0 265 60 0 40 chr12 28981837 28981887 -115300602 + (TTG)n Simple_repeat Simple_repeat 2 49 0 586 316 208 36 chr12 28982254 28982840 -115299649 + L3 LINE CR1 457 1143 -434 1189 195 4 13 chr12 28982903 28983129 -115299360 - AluJo SINE Alu -88 224 1 296 309 119 10 chr12 28983239 28983433 -115299056 - L1MC/D LINE L1 -531 6049 5835 24 0 0 0 chr12 28983544 28983568 -115298921 + AT_rich Low_complexity Low_complexity 1 24 0 300 246 45 77 chr12 28983649 28983869 -115298620 - L1MC/D LINE L1 -989 5575 5363 2455 237 19 36 chr12 28983913 28984610 -115297879 + MER76 LTR ERV 1 685 -3 914 188 16 36 chr12 28984622 28984814 -115297675 + MER5A DNA MER1_type 1 188 -1 227 278 111 0 chr12 28984870 28984960 -115297529 - L1MC/D LINE L1 -1294 5270 5171 3375 210 80 164 chr12 28985003 28986733 -115295756 - L1MCb LINE L1 -4819 1745 1 2245 93 10 13 chr12 28987188 28987501 -115294988 + AluSp SINE Alu 1 312 -1 22 35 0 0 chr12 28988388 28988417 -115294072 + AT_rich Low_complexity Low_complexity 1 29 0 389 272 38 32 chr12 28988632 28988790 -115293699 - L1ME1 LINE L1 -8 6158 6000 732 290 138 28 chr12 28989905 28990519 -115291970 - L1M4 LINE L1 -3261 2885 2204 * 7994 226 67 26 chr12 28990517 28990984 -115291505 - L1MC1 LINE L1 -37 6576 6130 641 69 11 0 chr12 28990984 28991071 -115291418 - L1PA10 LINE L1 -5 6163 6076 7994 226 67 26 chr12 28991071 28991154 -115291335 - L1MC1 LINE L1 -483 6130 6052 1626 150 64 64 chr12 28991154 28991528 -115290961 + THE1C LTR MaLR 1 374 -1 7994 226 67 26 chr12 28991528 28995673 -115286816 - L1MC1 LINE L1 -561 6052 1680 442 98 0 0 chr12 28995853 28995914 -115286575 - Alu SINE Alu -20 292 232 28 29 0 0 chr12 28995990 28996025 -115286464 + AT_rich Low_complexity Low_complexity 1 35 0 533 313 139 20 chr12 28996388 28996890 -115285599 - Tigger8 DNA MER2_type -100 566 5 1147 206 25 108 chr12 28997049 28997447 -115285042 + MLT1A1 LTR MaLR 1 365 0 451 186 12 12 chr12 28997533 28997619 -115284870 + Tigger5 DNA MER2_type 3 88 -2235 477 188 0 0 chr12 28997653 28997733 -115284756 + Tigger5 DNA MER2_type 2244 2323 0 270 81 0 0 chr12 28998609 28998646 -115283843 + (T)n Simple_repeat Simple_repeat 1 37 0 1697 195 114 51 chr12 28999335 28999674 -115282815 + L1ME2 LINE L1 4985 5301 -863 2379 93 3 0 chr12 28999674 28999984 -115282505 + AluSx SINE Alu 1 311 -1 1697 195 114 51 chr12 28999984 29000489 -115282000 + L1ME2 LINE L1 5301 5887 -277 270 280 0 28 chr12 29000472 29000579 -115281910 - L1MC4 LINE L1 -1325 6717 6614 * 258 137 0 59 chr12 29000582 29000684 -115281805 + (TA)n Simple_repeat Simple_repeat 2 97 0 397 284 0 21 chr12 29000870 29001011 -115281478 + L1MC5 LINE L1 7769 7906 -55 189 0 0 0 chr12 29001740 29001761 -115280728 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 650 215 207 15 chr12 29002620 29002881 -115279608 - MER5C DNA MER1_type 0 324 14 2343 120 6 0 chr12 29003384 29003741 -115278748 + L1PA14 LINE L1 5794 6152 -9 329 335 101 10 chr12 29004316 29004525 -115277964 + HAL1 LINE L1 162 389 -2118 840 215 169 33 chr12 29004532 29004834 -115277655 - MLT1A1 LTR MaLR 0 365 23 430 340 81 12 chr12 29004912 29005159 -115277330 + HAL1 LINE L1 460 723 -1784 1182 171 0 10 chr12 29005462 29005667 -115276822 - AluJb SINE Alu -109 203 1 312 318 84 9 chr12 29005928 29006142 -115276347 + L1ME LINE L1 5544 5773 -348 22 35 0 0 chr12 29006214 29006243 -115276246 + AT_rich Low_complexity Low_complexity 1 29 0 616 148 10 0 chr12 29006472 29006573 -115275916 + AluJ/FLAM SINE Alu 1 102 -210 216 86 0 0 chr12 29006612 29006647 -115275842 + (CAGGG)n Simple_repeat Simple_repeat 3 37 0 1772 108 24 16 chr12 29007595 29007846 -115274643 + AluSg SINE Alu 1 253 -57 270 287 21 21 chr12 29008067 29008161 -115274328 - L2 LINE L2 -35 3237 3144 180 200 0 0 chr12 29008175 29008215 -115274274 + CT-rich Low_complexity Low_complexity 3 42 0 306 280 43 11 chr12 29008282 29008375 -115274114 - MIR SINE MIR -55 207 112 189 0 0 0 chr12 29009333 29009354 -115273135 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 397 284 0 21 chr12 29010083 29010224 -115272265 - L1MC5 LINE L1 -55 7906 7769 236 350 14 7 chr12 29010227 29010370 -115272119 - L1ME3A LINE L1 -7 6163 6020 258 137 0 59 chr12 29010410 29010512 -115271977 + (TA)n Simple_repeat Simple_repeat 2 97 0 270 280 0 28 chr12 29010515 29010622 -115271867 + L1MC4 LINE L1 6614 6717 -1325 * 688 197 140 75 chr12 29010605 29010968 -115271521 - L1ME3A LINE L1 -275 5887 5498 22 0 0 0 chr12 29011287 29011309 -115271180 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 29011309 29011332 -115271157 + AT_rich Low_complexity Low_complexity 1 23 0 546 253 34 7 chr12 29011872 29012018 -115270471 - L2 LINE L2 -6 3307 3158 2592 176 56 7 chr12 29012022 29012814 -115269675 + L1ME2 LINE L1 5021 5858 -326 320 209 23 12 chr12 29013426 29013512 -115268977 + L1MA9 LINE L1 6078 6164 -148 303 317 137 5 chr12 29013523 29013728 -115268761 + L1MDa LINE L1 1707 1938 -4602 351 159 0 0 chr12 29014129 29014192 -115268297 + MADE1 DNA Mariner 6 68 -12 439 270 40 20 chr12 29015023 29015175 -115267314 + MIR SINE MIR 87 241 -21 2468 199 114 16 chr12 29018326 29019089 -115263400 + Charlie1 DNA MER1_type 1923 2760 -1 29 78 0 0 chr12 29019625 29019689 -115262800 + AT_rich Low_complexity Low_complexity 1 64 0 2275 268 74 41 chr12 29020981 29021862 -115260627 - L1M3d LINE L1 -4978 913 4 897 265 15 27 chr12 29022612 29022872 -115259617 - MIR SINE MIR 0 262 6 354 309 101 24 chr12 29023019 29023187 -115259302 - L2 LINE L2 -16 3297 3117 535 270 167 9 chr12 29023234 29023492 -115258997 + L1ME2 LINE L1 5862 6160 -10 592 282 102 4 chr12 29023550 29023795 -115258694 - L2 LINE L2 -887 2427 2159 1810 118 0 33 chr12 29025315 29025586 -115256903 - AluSg SINE Alu 0 310 49 327 345 104 48 chr12 29025865 29026221 -115256268 + L2 LINE L2 2809 3184 -88 243 275 47 107 chr12 29026584 29026733 -115255756 + L3 LINE CR1 987 1126 -451 396 349 62 17 chr12 29027010 29027251 -115255238 + MLT1K LTR MaLR 334 585 -3 241 317 117 0 chr12 29027284 29027404 -115255085 + MIR SINE MIR 49 182 -80 266 230 150 10 chr12 29027488 29027588 -115254901 + L3 LINE CR1 1149 1262 -315 243 210 92 59 chr12 29027594 29027713 -115254776 + L1MC4 LINE L1 6614 6736 -1306 1749 174 56 3 chr12 29027750 29028072 -115254417 - MER7A DNA MER2_type -9 337 1 198 188 0 0 chr12 29028673 29028705 -115253784 + L2 LINE L2 3214 3245 -27 198 188 0 0 chr12 29029395 29029427 -115253062 + L2 LINE L2 3214 3245 -27 1652 258 126 14 chr12 29029575 29030091 -115252398 + MER119 DNA MER1_type 7 580 -3 220 384 40 46 chr12 29030216 29030367 -115252122 - L2 LINE L2 -23 3249 3100 246 263 15 83 chr12 29030447 29030580 -115251909 - L2 LINE L2 -209 3063 2940 17655 171 53 16 chr12 29031386 29038526 -115243963 + L1MA2 LINE L1 17 7426 -297 1080 274 118 25 chr12 29038527 29039276 -115243213 + HAL1 LINE L1 1153 2005 -502 951 280 77 31 chr12 29039278 29039317 -115243172 + MLT1H LTR MaLR 140 176 -373 2060 134 0 6 chr12 29039317 29039630 -115242859 - AluSx SINE Alu -1 311 1 951 280 77 31 chr12 29039630 29039915 -115242574 + MLT1H LTR MaLR 176 479 -70 7917 201 75 28 chr12 29039916 29041957 -115240532 - Cheshire DNA MER1_type 0 2420 285 520 228 106 0 chr12 29041957 29042080 -115240409 - Cheshire DNA MER1_type -2282 138 3 248 205 46 0 chr12 29042080 29042148 -115240341 + MLT1H LTR MaLR 494 587 -8 324 280 82 39 chr12 29042157 29042339 -115240150 + HAL1 LINE L1 2156 2345 -162 1275 44 0 0 chr12 29042364 29042524 -115239965 + L1P LINE L1 2752 2911 -3235 700 183 51 35 chr12 29043274 29043462 -115239027 + MSTD LTR MaLR 174 396 0 21156 46 0 1 chr12 29043743 29047205 -115235284 + L1PA3 LINE L1 2678 6152 -3 183 259 93 0 chr12 29047462 29047516 -115234973 - L2 LINE L2 0 3313 3255 504 237 106 66 chr12 29047599 29047797 -115234692 + L2 LINE L2 2465 2670 -644 751 22 0 0 chr12 29048503 29048593 -115233896 + 5S rRNA rRNA 1 90 -31 285 205 24 24 chr12 29049228 29049311 -115233178 - LTR67 LTR ERVL 0 557 475 707 283 35 15 chr12 29049680 29049878 -115232611 - MIR SINE MIR -4 258 57 666 198 23 35 chr12 29050396 29050568 -115231921 - MER20 DNA MER1_type -5 214 45 890 293 118 15 chr12 29050860 29051249 -115231240 - LTR16A LTR ERVL -6 444 16 1014 314 66 42 chr12 29051489 29052125 -115230364 - HERV16 LTR ERVL -503 5261 4611 795 262 81 8 chr12 29052151 29052399 -115230090 - HERV16 LTR ERVL -3862 1134 869 21 71 0 0 chr12 29052677 29052719 -115229770 + AT_rich Low_complexity Low_complexity 1 42 0 1607 242 107 31 chr12 29053314 29053349 -115229140 - MLT2B1 LTR ERVL -8 512 481 189 0 0 0 chr12 29053349 29053370 -115229119 + (TG)n Simple_repeat Simple_repeat 2 22 0 1607 242 107 31 chr12 29053370 29053810 -115228679 - MLT2B1 LTR ERVL -39 481 1 398 266 116 58 chr12 29053977 29054236 -115228253 + L2 LINE L2 2337 2610 -704 494 277 116 49 chr12 29054241 29054731 -115227758 + L2 LINE L2 2521 3311 -2 6929 62 1 7 chr12 29055336 29056786 -115225703 + L1PA5 LINE L1 4711 6154 0 369 158 248 40 chr12 29058425 29058526 -115223963 + MER20 DNA MER1_type 97 218 -1 687 259 81 0 chr12 29059144 29059329 -115223160 + MER46C DNA MER2_type 8 207 -131 322 307 89 39 chr12 29059618 29059875 -115222614 + L1ME4a LINE L1 5293 5562 -600 486 244 134 36 chr12 29059895 29060202 -115222287 + L1ME4a LINE L1 5607 5943 -178 38 0 0 0 chr12 29061991 29062029 -115220460 + AT_rich Low_complexity Low_complexity 1 38 0 210 210 49 12 chr12 29062047 29062128 -115220361 + (TA)n Simple_repeat Simple_repeat 2 85 0 2198 107 0 23 chr12 29062310 29062620 -115219869 - AluSx SINE Alu -9 303 1 2107 182 23 5 chr12 29063129 29063564 -115218925 - L1MB1 LINE L1 -1 6167 5725 401 194 231 22 chr12 29063998 29064132 -115218357 + MIR SINE MIR 97 258 -4 956 226 32 18 chr12 29066049 29066270 -115216219 + MER58A DNA MER1_type 1 224 0 283 306 0 27 chr12 29067052 29067163 -115215326 + MIR3 SINE MIR 98 205 -3 22 0 0 0 chr12 29068832 29068854 -115213635 + AT_rich Low_complexity Low_complexity 1 22 0 544 163 16 0 chr12 29069017 29069146 -115213343 + (TG)n Simple_repeat Simple_repeat 2 132 0 435 274 115 6 chr12 29070218 29070375 -115212114 - MIR SINE MIR -3 259 86 1784 330 93 16 chr12 29071079 29072079 -115210410 - ERVL LTR ERVL -2268 3496 2420 431 416 65 5 chr12 29072083 29072499 -115209990 - ERVL LTR ERVL -3540 2114 1674 492 242 74 42 chr12 29073207 29073397 -115209092 - LTR67 LTR ERVL -2 555 360 261 285 139 21 chr12 29073523 29073667 -115208822 - LTR67 LTR ERVL -356 201 41 322 284 10 29 chr12 29073999 29074101 -115208388 + L1MC4 LINE L1 6604 6703 -1339 301 250 0 62 chr12 29074015 29074111 -115208378 - L1MC4 LINE L1 -1339 6703 6614 * 204 125 0 0 chr12 29074702 29074734 -115207755 + (T)n Simple_repeat Simple_repeat 1 32 0 7305 36 1 0 chr12 29074757 29076227 -115206262 - L1PA4 LINE L1 -3 6152 4687 317 300 136 50 chr12 29077179 29077319 -115205170 + MIR SINE MIR 2 153 -109 1328 232 129 33 chr12 29077366 29077823 -115204666 + MLT1F1 LTR MaLR 67 567 0 21 0 0 0 chr12 29079436 29079457 -115203032 + AT_rich Low_complexity Low_complexity 1 21 0 1174 189 45 94 chr12 29079557 29079960 -115202529 - MLT1B LTR MaLR -7 383 1 1526 70 0 15 chr12 29080015 29080215 -115202274 - MER107 DNA MER1_type 0 197 1 1672 301 125 11 chr12 29080215 29081061 -115201428 + L2 LINE L2 2123 3066 -247 219 69 0 0 chr12 29081258 29081287 -115201202 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr12 29081574 29081595 -115200894 + AT_rich Low_complexity Low_complexity 1 21 0 344 336 0 0 chr12 29083043 29083162 -115199327 + L1ME LINE L1 4740 4858 -1288 286 264 22 84 chr12 29083217 29083395 -115199094 + L1ME LINE L1 5652 5749 -372 305 203 33 33 chr12 29083406 29083506 -115198983 + L1ME LINE L1 5510 5595 -526 512 252 8 16 chr12 29084083 29084206 -115198283 - L2 LINE L2 0 3313 3192 2051 146 0 3 chr12 29084926 29085221 -115197268 - AluSx SINE Alu -18 294 1 38 39 0 0 chr12 29086835 29086887 -115195602 + AT_rich Low_complexity Low_complexity 1 52 0 247 328 130 8 chr12 29087019 29087151 -115195338 + MIR SINE MIR 68 225 -37 29 47 0 0 chr12 29088559 29088602 -115193887 + AT_rich Low_complexity Low_complexity 1 43 0 250 266 211 23 chr12 29088602 29088730 -115193759 + L2 LINE L2 3162 3313 0 331 371 27 14 chr12 29089091 29089312 -115193177 - L2 LINE L2 -2891 423 200 865 277 137 17 chr12 29090414 29090873 -115191616 + L2 LINE L2 2199 2712 -602 738 224 88 5 chr12 29092195 29092387 -115190102 + MER3 DNA MER1_type 1 208 -1 274 320 141 0 chr12 29092998 29093126 -115189363 - MIR SINE MIR -32 230 85 558 251 153 6 chr12 29094001 29094184 -115188305 + MIR SINE MIR 34 243 -19 1770 108 100 0 chr12 29094308 29094567 -115187922 + AluSc SINE Alu 1 285 -24 207 0 0 0 chr12 29094765 29094788 -115187701 + (T)n Simple_repeat Simple_repeat 1 23 0 1983 115 70 16 chr12 29095816 29096130 -115186359 - THE1B LTR MaLR -33 331 1 248 299 0 13 chr12 29096975 29097052 -115185437 + MLT1I LTR MaLR 324 399 -10 207 340 124 0 chr12 29098053 29098206 -115184283 - MIR SINE MIR -56 206 35 2251 96 3 16 chr12 29098252 29098555 -115183934 + AluSq SINE Alu 1 299 -14 445 355 6 24 chr12 29098650 29098816 -115183673 + MER5A DNA MER1_type 1 163 -26 1604 169 40 3 chr12 29099104 29099429 -115183060 + L1MA7 LINE L1 5953 6289 -2 1241 141 19 0 chr12 29099436 29099649 -115182840 + L1MA3 LINE L1 6089 6305 0 218 178 0 100 chr12 29099658 29099748 -115182741 + A-rich Low_complexity Low_complexity 1 81 0 349 282 115 13 chr12 29100017 29100174 -115182315 - MIR3 SINE MIR -67 141 2 1664 154 103 0 chr12 29102179 29102451 -115180038 + AluJo SINE Alu 11 310 -2 2734 78 17 0 chr12 29102757 29103115 -115179374 - THE1B LTR MaLR 0 364 1 394 301 147 12 chr12 29105188 29105351 -115177138 + MIR3 SINE MIR 21 205 -3 477 263 44 31 chr12 29105649 29105809 -115176680 + Charlie8 DNA MER1_type 8 169 -2248 942 186 47 33 chr12 29105853 29106068 -115176421 - MER20 DNA MER1_type -1 218 1 620 238 17 52 chr12 29106102 29106274 -115176215 - MIR3 SINE MIR -30 178 13 3225 195 86 1 chr12 29107257 29107933 -115174556 - MER44D DNA MER2_type 0 605 1 1357 285 50 10 chr12 29108827 29109308 -115173181 + MLT1J LTR MaLR 11 510 -1 195 322 186 35 chr12 29110871 29111129 -115171360 - L2 LINE L2 -167 3105 2809 423 317 156 0 chr12 29111258 29111463 -115171026 - MIR SINE MIR -6 256 20 331 342 68 37 chr12 29112289 29112479 -115170010 + L3 LINE CR1 1370 1565 -12 364 283 25 45 chr12 29113998 29114196 -115168293 - L2 LINE L2 -200 3072 2879 607 262 18 6 chr12 29114414 29114582 -115167907 + MER45A DNA AcHobo 9 178 0 202 285 109 31 chr12 29114631 29114824 -115167665 - L2 LINE L2 -445 2869 2662 573 228 63 6 chr12 29115197 29115355 -115167134 + MER5A DNA MER1_type 1 167 -22 582 168 26 0 chr12 29116504 29116617 -115165872 + AluJb SINE Alu 189 304 -8 2048 167 57 19 chr12 29116617 29116983 -115165506 + MSTB LTR MaLR 47 426 0 210 287 171 31 chr12 29117919 29118048 -115164441 + L2 LINE L2 3167 3313 0 458 283 28 72 chr12 29119650 29119830 -115162659 + MIR SINE MIR 11 182 -80 301 234 28 75 chr12 29119809 29119916 -115162573 - MIR SINE MIR -14 248 147 * 533 242 93 19 chr12 29119990 29120151 -115162338 - MIR SINE MIR -52 210 38 29 0 0 0 chr12 29120621 29120650 -115161839 + AT_rich Low_complexity Low_complexity 1 29 0 312 360 32 21 chr12 29121579 29121765 -115160724 - HERV16 LTR ERVL -3582 2072 1885 490 242 74 42 chr12 29122662 29122852 -115159637 - LTR67 LTR ERVL -2 555 360 315 299 161 11 chr12 29122978 29123152 -115159337 - LTR67 LTR ERVL -356 201 2 321 284 10 29 chr12 29123466 29123568 -115158921 + L1MC4 LINE L1 6604 6703 -1339 229 208 104 52 chr12 29125053 29125130 -115157359 - MLT1I LTR MaLR -272 137 57 387 228 30 40 chr12 29125372 29125473 -115157016 - L2 LINE L2 0 3313 3214 * 554 252 14 48 chr12 29125470 29125617 -115156872 + L2 LINE L2 3172 3313 0 7048 48 6 0 chr12 29125981 29127078 -115155411 - L1PA7 LINE L1 -8 6146 5036 8448 34 1 0 chr12 29127757 29128780 -115153709 - L1PA3 LINE L1 -1928 4218 3195 9888 25 2 1 chr12 29128776 29130710 -115151779 + L1PA3 LINE L1 4218 6152 -3 503 237 106 66 chr12 29131104 29131302 -115151187 + L2 LINE L2 2465 2670 -644 764 22 0 0 chr12 29132008 29132098 -115150391 + 5S rRNA rRNA 1 90 -31 280 205 24 24 chr12 29132733 29132816 -115149673 - LTR67 LTR ERVL 0 557 475 703 283 35 15 chr12 29133185 29133383 -115149106 - MIR SINE MIR -4 258 57 667 198 23 35 chr12 29133901 29134073 -115148416 - MER20 DNA MER1_type -5 214 45 898 286 118 23 chr12 29134365 29134756 -115147733 - LTR16A LTR ERVL -6 444 17 1012 314 66 42 chr12 29134993 29135629 -115146860 - HERV16 LTR ERVL -503 5261 4611 797 262 77 4 chr12 29135655 29135903 -115146586 - HERV16 LTR ERVL -3862 1134 869 21 71 0 0 chr12 29136180 29136222 -115146267 + AT_rich Low_complexity Low_complexity 1 42 0 1611 242 107 31 chr12 29136817 29136852 -115145637 - MLT2B1 LTR ERVL -8 512 481 189 0 0 0 chr12 29136852 29136873 -115145616 + (TG)n Simple_repeat Simple_repeat 2 22 0 1611 242 107 31 chr12 29136873 29137313 -115145176 - MLT2B1 LTR ERVL -39 481 1 411 266 120 62 chr12 29137483 29137742 -115144747 + L2 LINE L2 2337 2610 -704 501 279 114 49 chr12 29137747 29138238 -115144251 + L2 LINE L2 2521 3311 -2 1082 220 14 9 chr12 29139102 29139325 -115143164 + MER58A DNA MER1_type 1 224 0 243 164 0 115 chr12 29139896 29139957 -115142532 + MIR SINE MIR 199 252 -10 1166 156 71 18 chr12 29139989 29140213 -115142276 + MER46A DNA MER2_type 1 236 0 4335 139 12 23 chr12 29140315 29141456 -115141033 - L1PA14 LINE L1 -243 5918 4800 1219 124 6 5 chr12 29141454 29141654 -115140835 + L1PA13 LINE L1 5966 6166 -8 * 528 245 7 35 chr12 29142406 29142549 -115139940 - L1ME3A LINE L1 -63 6107 5969 1543 191 55 60 chr12 29142859 29142937 -115139552 - MSTD LTR MaLR 0 396 319 1822 187 7 3 chr12 29142937 29143242 -115139247 + AluJo SINE Alu 1 306 -6 1543 191 55 60 chr12 29143242 29143561 -115138928 - MSTD LTR MaLR -77 319 1 493 126 0 0 chr12 29144201 29144288 -115138201 - L1PB1 LINE L1 0 6151 6065 5595 171 63 24 chr12 29144289 29145909 -115136580 - L1PB1 LINE L1 -36 6831 5092 243 0 0 0 chr12 29145909 29145936 -115136553 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 5595 171 63 24 chr12 29145936 29146176 -115136313 - L1PB1 LINE L1 -1775 5092 4863 28506 49 1 1 chr12 29146186 29150561 -115131928 - L1PA5 LINE L1 -2 6152 1777 1323 71 0 0 chr12 29150561 29150730 -115131759 + L1PA5 LINE L1 1634 1802 -4344 * 13532 174 81 8 chr12 29150726 29155266 -115127223 - L1PB1 LINE L1 -1985 4877 6 305 147 162 0 chr12 29155349 29155417 -115127072 - AluJ/FRAM SINE Alu 0 302 224 411 222 94 0 chr12 29155440 29155557 -115126932 + L1MC4a LINE L1 5721 5848 -1960 186 133 0 0 chr12 29155615 29155645 -115126844 + (TA)n Simple_repeat Simple_repeat 1 30 0 1312 260 118 42 chr12 29156633 29157186 -115125303 + MLT1G1 LTR MaLR 1 595 0 449 106 15 0 chr12 29157449 29157515 -115124974 + MSTD LTR MaLR 1 67 -329 553 151 53 22 chr12 29157540 29157690 -115124799 + MSTD LTR MaLR 208 396 0 927 302 69 58 chr12 29158357 29158837 -115123652 - L2 LINE L2 -8 3305 2821 272 264 22 0 chr12 29158842 29158933 -115123556 - L2 LINE L2 -1294 2020 1928 522 234 184 6 chr12 29159049 29159370 -115123119 + Charlie2 DNA MER1_type 2423 2800 -62 270 310 163 31 chr12 29160708 29160837 -115121652 + MIR SINE MIR 12 157 -105 21 0 0 0 chr12 29160927 29160948 -115121541 + AT_rich Low_complexity Low_complexity 1 21 0 2241 92 7 3 chr12 29162358 29162653 -115119836 + AluY SINE Alu 1 296 -15 772 302 22 9 chr12 29163081 29163313 -115119176 + MIR SINE MIR 3 237 -25 21 36 0 0 chr12 29163410 29163438 -115119051 + AT_rich Low_complexity Low_complexity 1 28 0 273 296 94 91 chr12 29164205 29164621 -115117868 - MLT1J LTR MaLR -94 417 1 562 177 26 0 chr12 29214866 29214979 -115067510 + AluJb SINE Alu 189 304 -8 1917 167 57 19 chr12 29214979 29215345 -115067144 + MSTB LTR MaLR 47 426 0 219 287 171 31 chr12 29216281 29216410 -115066079 + L2 LINE L2 3167 3313 0 452 282 28 77 chr12 29218012 29218193 -115064296 + MIR SINE MIR 11 182 -80 299 234 28 75 chr12 29218172 29218279 -115064210 - MIR SINE MIR -14 248 147 * 537 242 93 19 chr12 29218353 29218514 -115063975 - MIR SINE MIR -52 210 38 2049 110 21 21 chr12 29219373 29219664 -115062825 + AluSx SINE Alu 21 311 -1 485 274 116 7 chr12 29220627 29220773 -115061716 - MIR3 SINE MIR -17 191 30 354 353 133 0 chr12 29221212 29221362 -115061127 - L2 LINE L2 -4 3268 3099 549 274 63 31 chr12 29221428 29221651 -115060838 + MER20B DNA MER1_type 38 267 -516 1229 122 0 0 chr12 29221651 29221852 -115060637 - AluSg/x SINE Alu 0 327 127 2389 86 0 7 chr12 29221857 29222160 -115060329 - AluY SINE Alu -10 301 1 521 230 85 12 chr12 29222161 29222326 -115060163 + MER20B DNA MER1_type 258 434 -349 264 30 0 0 chr12 29223440 29223473 -115059016 + (TTTTTG)n Simple_repeat Simple_repeat 1 33 0 187 222 0 0 chr12 29224397 29224433 -115058056 - L2 LINE L2 -48 3224 3189 331 380 30 13 chr12 29225354 29225588 -115056901 - HAL1 LINE L1 -1162 1345 1108 10330 140 28 60 chr12 29225602 29225923 -115056566 - Tigger1 DNA MER2_type -310 2108 1778 2287 84 3 7 chr12 29225923 29226222 -115056267 - AluY SINE Alu -2 309 12 10330 140 28 60 chr12 29226222 29228079 -115054410 - Tigger1 DNA MER2_type -640 1778 1 403 319 51 7 chr12 29228112 29228250 -115054239 - MER5B DNA MER1_type -11 167 24 349 385 62 5 chr12 29228953 29229148 -115053341 - MIR SINE MIR -55 207 2 262 222 16 0 chr12 29230400 29230463 -115052026 + LTR33 LTR ERVL 10 73 -448 347 314 98 58 chr12 29230633 29230907 -115051582 + HAL1 LINE L1 1313 1597 -910 1803 141 25 0 chr12 29231812 29232112 -115050377 - AluSx SINE Alu 0 307 1 662 303 45 5 chr12 29233243 29233464 -115049025 + MIR SINE MIR 20 249 -13 1805 159 12 77 chr12 29233471 29233885 -115048604 - MLT1B LTR MaLR 0 390 4 278 283 87 51 chr12 29235078 29235216 -115047273 + MIR SINE MIR 3 145 -63 294 356 111 19 chr12 29235410 29235626 -115046863 - MIR SINE MIR -7 255 20 24 32 0 0 chr12 29235644 29235675 -115046814 + AT_rich Low_complexity Low_complexity 1 31 0 282 328 72 40 chr12 29236153 29236278 -115046211 + L2 LINE L2 3143 3271 -1 24 0 0 0 chr12 29237182 29237206 -115045283 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr12 29237206 29237248 -115045241 + (TG)n Simple_repeat Simple_repeat 1 42 0 677 207 0 0 chr12 29237248 29237359 -115045130 - Tigger2 DNA MER2_type -16 2702 2592 1504 109 73 44 chr12 29237386 29237528 -115044961 + Tigger2 DNA MER2_type 2334 2470 -248 2336 117 0 0 chr12 29237528 29237836 -115044653 - AluSx SINE Alu -4 308 1 1504 109 73 44 chr12 29237836 29237968 -115044521 + Tigger2 DNA MER2_type 2470 2616 -102 5087 79 6 0 chr12 29238650 29239322 -115043167 - L1PA7 LINE L1 0 6154 5479 28 0 0 0 chr12 29240561 29240589 -115041900 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 29240994 29241014 -115041475 + (TATATG)n Simple_repeat Simple_repeat 5 24 0 191 284 64 64 chr12 29241636 29241745 -115040744 - L3 LINE CR1 -22 1555 1447 1691 251 55 31 chr12 29242085 29242635 -115039854 + Charlie1a DNA MER1_type 1 563 -892 2313 176 83 16 chr12 29242691 29243242 -115039247 + Charlie1a DNA MER1_type 868 1455 0 333 333 103 0 chr12 29245080 29245254 -115037235 + MIR SINE MIR 6 197 -65 2245 149 142 0 chr12 29245696 29246111 -115036378 + MER101 LTR ERV1 1 474 0 1427 218 13 13 chr12 29248783 29249086 -115033403 - AluJo SINE Alu -7 305 3 320 0 25 0 chr12 29249088 29249128 -115033361 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 240 59 0 0 chr12 29249135 29249169 -115033320 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 669 134 0 0 chr12 29249169 29249266 -115033223 - FLAM_C SINE Alu -26 117 21 2663 257 20 14 chr12 29250333 29251042 -115031447 + L1MEc LINE L1 32 744 -5652 3596 174 38 6 chr12 29251082 29251760 -115030729 + L1MC3 LINE L1 7065 7764 -21 1879 278 98 22 chr12 29251793 29252781 -115029708 + L1MEc LINE L1 810 1872 -4524 * 3020 241 61 18 chr12 29252777 29254108 -115028381 + L1ME1 LINE L1 4767 6139 -27 878 273 49 33 chr12 29254104 29254278 -115028211 + L1MEc LINE L1 1863 2033 -4363 * 1768 90 144 10 chr12 29254278 29254590 -115027899 + L1MA3 LINE L1 5952 6305 0 878 273 49 33 chr12 29254590 29254840 -115027649 + L1MEc LINE L1 2033 2294 -4102 303 330 46 29 chr12 29255958 29256131 -115026358 - MER20B DNA MER1_type -606 177 2 1813 182 30 43 chr12 29256141 29256536 -115025953 - MLT1B LTR MaLR 0 390 1 1082 246 3 42 chr12 29256577 29256862 -115025627 - MER93b LTR ERV1 -2 371 98 309 204 0 120 chr12 29257171 29257279 -115025210 + MLT1L LTR MaLR 193 287 -328 1092 208 93 28 chr12 29257549 29257908 -115024581 - L1MEc LINE L1 -2757 3458 3069 1357 224 29 45 chr12 29257908 29258288 -115024201 + MLT1A2 LTR MaLR 1 374 0 1092 208 93 28 chr12 29258288 29258327 -115024162 - L1MEc LINE L1 -3146 3069 3034 1393 231 148 7 chr12 29258330 29258872 -115023617 - L1MEc LINE L1 -3296 2919 2454 1797 176 14 43 chr12 29258872 29259084 -115023405 + L1PA15 LINE L1 5829 6029 -136 1845 174 0 29 chr12 29259084 29259400 -115023089 + AluSx SINE Alu 1 307 -5 1797 176 14 43 chr12 29259400 29259534 -115022955 + L1PA15 LINE L1 6029 6165 0 1393 231 148 7 chr12 29259534 29259626 -115022863 - L1MEc LINE L1 -3761 2454 2376 7770 20 0 0 chr12 29259626 29260653 -115021836 + L1PA3 LINE L1 5128 6154 -1 1393 231 148 7 chr12 29260653 29261042 -115021447 - L1MEc LINE L1 -3839 2376 1650 1208 203 33 61 chr12 29261068 29261398 -115021091 + MLT2D LTR ERVL 92 412 -2 415 237 29 36 chr12 29261438 29261577 -115020912 - L1MEc LINE L1 -6223 173 36 239 316 63 0 chr12 29262572 29262651 -115019838 + L2 LINE L2 3227 3310 -3 2386 80 0 10 chr12 29262892 29263205 -115019284 + AluY SINE Alu 1 310 -1 228 191 60 24 chr12 29263317 29263401 -115019088 - Charlie5 DNA MER1_type -160 2452 2366 885 358 22 25 chr12 29263454 29263898 -115018591 + L1M3c LINE L1 174 616 -5697 2162 231 114 33 chr12 29264107 29265219 -115017270 + L1M3c LINE L1 910 1872 -4512 680 156 127 12 chr12 29265331 29265504 -115016985 - Charlie5 DNA MER1_type -2419 193 1 26 0 0 0 chr12 29266554 29266580 -115015909 + AT_rich Low_complexity Low_complexity 1 26 0 291 285 31 23 chr12 29266618 29266748 -115015741 + L1ME4a LINE L1 5952 6082 -39 23 0 0 0 chr12 29266826 29266849 -115015640 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr12 29267680 29267707 -115014782 + (TG)n Simple_repeat Simple_repeat 2 28 0 565 212 120 50 chr12 29268057 29268633 -115013856 + LTR48 LTR ERV1 5 542 0 688 305 156 35 chr12 29269256 29269968 -115012521 + HAL1 LINE L1 1127 1924 -583 200 195 0 0 chr12 29270113 29270154 -115012335 + GA-rich Low_complexity Low_complexity 4 44 0 510 242 78 7 chr12 29270832 29270902 -115011587 + MER69A DNA AcHobo 14 78 -2448 441 0 0 0 chr12 29270902 29270951 -115011538 + (CA)n Simple_repeat Simple_repeat 2 50 0 510 242 78 7 chr12 29270951 29271033 -115011456 + MER69A DNA AcHobo 78 177 0 37 52 0 0 chr12 29271936 29271994 -115010495 + AT_rich Low_complexity Low_complexity 1 58 0 322 302 21 0 chr12 29272231 29272327 -115010162 + MIR SINE MIR 49 146 -62 622 229 22 71 chr12 29272341 29272524 -115009965 + MER5A DNA MER1_type 4 177 -12 410 296 177 22 chr12 29272795 29273021 -115009468 + MIR SINE MIR 2 262 0 26 30 0 0 chr12 29273021 29273054 -115009435 + AT_rich Low_complexity Low_complexity 1 33 0 839 256 80 4 chr12 29273559 29273821 -115008668 + MER99 DNA DNA 546 827 -1 585 243 99 39 chr12 29274013 29274297 -115008192 - LTR43 LTR ERV1 -148 454 154 210 358 37 0 chr12 29275015 29275096 -115007393 - L2 LINE L2 -257 3015 2932 245 400 44 7 chr12 29275521 29275656 -115006833 - L2 LINE L2 -12 3260 3121 336 314 76 0 chr12 29276247 29276365 -115006124 - MIR3 SINE MIR -52 156 30 214 194 31 71 chr12 29277085 29277183 -115005306 + CT-rich Low_complexity Low_complexity 3 96 0 252 196 0 0 chr12 29277183 29277229 -115005260 - L2 LINE L2 -24 3248 3203 280 329 0 0 chr12 29277436 29277506 -115004983 + MIR SINE MIR 1 70 -192 6714 270 60 41 chr12 29277884 29278460 -115004029 - L1M1 LINE L1 -3899 2833 2269 2173 104 0 4 chr12 29278460 29278738 -115003751 - AluSc SINE Alu -32 277 1 6714 270 60 41 chr12 29278738 29281601 -115000888 - L1M1 LINE L1 -4463 2269 2 240 240 73 9 chr12 29282012 29282131 -115000358 - L1MC/D LINE L1 -485 5636 5573 329 286 232 14 chr12 29282558 29282778 -114999711 + L3 LINE CR1 1306 1573 -4 374 222 46 19 chr12 29282782 29282890 -114999599 - MIR SINE MIR -6 256 146 38 22 0 0 chr12 29283339 29283384 -114999105 + AT_rich Low_complexity Low_complexity 1 45 0 375 202 0 0 chr12 29284719 29284803 -114997686 + (TA)n Simple_repeat Simple_repeat 1 84 0 456 192 16 8 chr12 29285490 29285667 -114996822 - MLT1C LTR MaLR 0 467 241 363 295 44 9 chr12 29286588 29286815 -114995674 + L1M3 LINE L1 4430 4664 -1482 14908 176 21 24 chr12 29287072 29291102 -114991387 + L1MA3 LINE L1 2288 6305 0 22 0 0 0 chr12 29291102 29291124 -114991365 + AT_rich Low_complexity Low_complexity 1 22 0 226 261 76 22 chr12 29291460 29291552 -114990937 + L1M3 LINE L1 5349 5445 -723 285 254 127 34 chr12 29291651 29291856 -114990633 + L1ME LINE L1 5562 5785 -336 1097 259 87 19 chr12 29291861 29292231 -114990258 - MLT1I LTR MaLR -9 400 6 359 202 0 40 chr12 29292345 29292444 -114990045 + L1MB8 LINE L1 6084 6178 0 268 355 0 16 chr12 29292720 29292841 -114989648 + LTR16C LTR ERVL 363 481 -10 200 340 0 0 chr12 29292992 29293042 -114989447 + L2 LINE L2 3195 3244 -28 328 206 0 15 chr12 29293822 29293890 -114988599 + LTR67 LTR ERVL 450 516 -41 4585 100 7 7 chr12 29294407 29295094 -114987395 + L1PB1 LINE L1 5464 6150 -1 1915 224 54 9 chr12 29295408 29295850 -114986639 + MLT1C LTR MaLR 6 467 0 544 139 0 0 chr12 29296533 29296619 -114985870 + AluS SINE Alu 1 86 -227 225 94 0 0 chr12 29296911 29296943 -114985546 + (TAG)n Simple_repeat Simple_repeat 1 32 0 685 271 33 0 chr12 29296972 29297153 -114985336 - MIR SINE MIR -5 257 71 1384 140 3 8 chr12 29297176 29297492 -114984997 + THE1B LTR MaLR 1 364 0 207 325 138 69 chr12 29299186 29299346 -114983143 - MIR SINE MIR 0 262 92 772 240 80 22 chr12 29300260 29300485 -114982004 - MIR SINE MIR 0 262 25 188 193 18 35 chr12 29300560 29300617 -114981872 + MIR SINE MIR 99 154 -108 219 88 0 0 chr12 29301606 29301640 -114980849 + (CAGG)n Simple_repeat Simple_repeat 4 37 0 2143 114 13 0 chr12 29302825 29303132 -114979357 + AluSx SINE Alu 1 311 -1 473 319 55 6 chr12 29303506 29303688 -114978801 - MIR SINE MIR -52 210 20 2137 168 92 10 chr12 29304891 29305302 -114977187 - Tigger2 DNA MER2_type -1 2717 2273 406 145 14 14 chr12 29305292 29305361 -114977128 - Tigger2 DNA MER2_type -2649 69 1 * 2229 123 0 0 chr12 29305437 29305737 -114976752 + AluSx SINE Alu 1 300 -12 543 173 29 0 chr12 29305773 29305877 -114976612 - MLT1I LTR MaLR 0 409 303 22 0 0 0 chr12 29307091 29307113 -114975376 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr12 29307278 29307302 -114975187 + (TG)n Simple_repeat Simple_repeat 1 24 0 16500 36 0 0 chr12 29309480 29311574 -114970915 + L1PA5 LINE L1 3397 5490 -664 2390 31 0 3 chr12 29311574 29311857 -114970632 + L1PA5 LINE L1 5859 6146 -8 768 273 5 0 chr12 29312190 29312377 -114970112 - MER5A DNA MER1_type 0 189 2 796 259 19 13 chr12 29313299 29313615 -114968874 - L1MEc LINE L1 -1511 4704 4387 701 291 88 33 chr12 29313621 29314020 -114968469 + LTR52 LTR ERVL 1 421 0 746 267 76 15 chr12 29314022 29314352 -114968137 - L1MEc LINE L1 -1831 4384 4035 8796 181 23 38 chr12 29314353 29318339 -114964150 - L1P3 LINE L1 -1063 5398 10 1802 261 107 16 chr12 29318347 29319386 -114963103 - L1MEc LINE L1 -2358 3857 2627 1237 242 132 47 chr12 29319389 29319470 -114963019 - LTR40a LTR ERVL 0 519 446 1457 213 49 36 chr12 29319470 29319855 -114962634 - MLT1B LTR MaLR 0 390 1 1237 242 132 47 chr12 29319855 29320219 -114962270 - LTR40a LTR ERVL -73 446 36 600 268 0 7 chr12 29320239 29320381 -114962108 + MER45A DNA AcHobo 38 178 0 856 277 123 31 chr12 29320455 29321402 -114961087 - L1MEc LINE L1 -3594 2621 1627 1700 181 28 3 chr12 29321502 29321827 -114960662 - L1MA8 LINE L1 -183 7527 7195 501 65 83 24 chr12 29321833 29322001 -114960488 + (TA)n Simple_repeat Simple_repeat 1 178 0 612 63 66 38 chr12 29322027 29322537 -114959952 + (TA)n Simple_repeat Simple_repeat 1 524 0 776 145 7 14 chr12 29322563 29322701 -114959788 - L1MA8 LINE L1 -487 7223 7087 * 11509 190 19 14 chr12 29322699 29325316 -114957173 - L1MA8 LINE L1 -743 6822 4252 624 189 7 52 chr12 29325324 29325477 -114957012 - L1MA8 LINE L1 -4107 3458 3313 350 148 0 38 chr12 29325505 29325715 -114956774 + AluJb SINE Alu 4 294 -8 21 0 0 0 chr12 29325802 29325823 -114956666 + AT_rich Low_complexity Low_complexity 1 21 0 2290 114 0 0 chr12 29325867 29326174 -114956315 + AluSc SINE Alu 3 309 0 6215 89 11 0 chr12 29326221 29327787 -114954702 - L1PA8A LINE L1 -13 6118 4547 2460 18 0 0 chr12 29327790 29328069 -114954420 - L1P1 LINE L1 -376 5779 5501 25 31 0 0 chr12 29328084 29328116 -114954373 + AT_rich Low_complexity Low_complexity 1 32 0 849 282 82 31 chr12 29328125 29329172 -114953317 + L1M4 LINE L1 4333 5437 -741 * 1378 189 164 6 chr12 29329166 29329483 -114953006 - L1MCa LINE L1 -6040 386 20 459 312 87 14 chr12 29330286 29330562 -114951927 - L1ME LINE L1 -434 5728 5433 * 9592 209 67 28 chr12 29330561 29332827 -114949662 + L1MC1 LINE L1 386 2564 -4049 1619 189 33 7 chr12 29332827 29333129 -114949360 + AluSx SINE Alu 3 312 0 9592 209 67 28 chr12 29333129 29336670 -114945819 + L1MC1 LINE L1 2564 6442 -171 814 306 92 48 chr12 29336802 29337256 -114945233 + L2 LINE L2 918 1391 -1923 242 321 117 43 chr12 29337223 29337385 -114945104 + L2 LINE L2 3104 3277 -36 * 340 351 37 43 chr12 29337943 29338242 -114944247 + L1MEc LINE L1 975 1271 -5554 414 268 129 28 chr12 29338272 29338823 -114943666 + L1MEc LINE L1 1280 1943 -4882 2168 266 50 29 chr12 29338829 29339859 -114942630 + L1M2 LINE L1 1638 2689 -4160 20591 158 10 20 chr12 29339891 29344705 -114937784 + L1P3 LINE L1 6 4841 -1620 246 32 0 0 chr12 29344734 29344765 -114937724 + (TAA)n Simple_repeat Simple_repeat 3 33 0 29305 42 7 2 chr12 29344773 29349211 -114933278 - HAL1b LINE L1 -23 6132 316 819 284 95 20 chr12 29349588 29350148 -114932341 - L1M4 LINE L1 -2180 3966 3341 259 300 0 0 chr12 29351205 29351275 -114931214 + MIR3 SINE MIR 139 208 0 200 313 0 20 chr12 29351462 29351561 -114930928 + T-rich Low_complexity Low_complexity 6 102 0 193 328 0 0 chr12 29351764 29351825 -114930664 + MIR SINE MIR 144 204 -58 22 35 0 0 chr12 29352015 29352044 -114930445 + AT_rich Low_complexity Low_complexity 1 29 0 525 295 63 58 chr12 29353390 29353787 -114928702 - L1ME LINE L1 -339 5782 5384 371 354 139 11 chr12 29353945 29354392 -114928097 - L1ME LINE L1 -1071 5075 4572 316 285 89 25 chr12 29354542 29354700 -114927789 - MLT1J1 LTR MaLR -78 368 201 372 262 151 0 chr12 29354777 29354903 -114927586 - MLT1J2 LTR MaLR -284 166 22 385 355 144 10 chr12 29355868 29356369 -114926120 + L2 LINE L2 2222 2789 -525 3085 158 66 34 chr12 29356534 29356554 -114925935 - L1MC2 LINE L1 -1 6343 6325 2365 86 3 3 chr12 29356554 29356857 -114925632 + AluSp SINE Alu 4 306 -7 3085 158 66 34 chr12 29356857 29357091 -114925398 - L1MC2 LINE L1 -19 6325 6100 2035 134 45 25 chr12 29357091 29357448 -114925041 - THE1B LTR MaLR 0 364 1 3085 158 66 34 chr12 29357448 29357843 -114924646 - L1MC2 LINE L1 -244 6100 5672 2690 142 5 27 chr12 29357845 29358283 -114924206 - MSTA LTR MaLR 0 428 1 208 411 115 21 chr12 29358385 29358628 -114923861 - L2 LINE L2 -4 3268 3003 398 256 72 40 chr12 29358890 29359015 -114923474 + L2 LINE L2 3180 3308 -5 458 332 90 16 chr12 29359957 29360213 -114922276 + HAL1 LINE L1 901 1175 -1332 635 274 35 55 chr12 29360292 29360602 -114921887 + HAL1 LINE L1 1670 1973 -534 1087 246 91 27 chr12 29360642 29361019 -114921470 - MLT2E LTR ERVL -8 620 171 1848 171 125 18 chr12 29361019 29361404 -114921085 + MSTA LTR MaLR 1 426 -2 1087 246 91 27 chr12 29361404 29361587 -114920902 - MLT2E LTR ERVL -457 171 1 308 244 70 26 chr12 29361841 29361956 -114920533 + HAL1 LINE L1 2103 2222 -285 1916 109 11 4 chr12 29361960 29362225 -114920264 - AluSx SINE Alu -41 271 5 503 248 9 0 chr12 29363407 29363516 -114918973 - MER81 DNA DNA -4 110 1 621 0 83 0 chr12 29363967 29364076 -114918413 + (TA)n Simple_repeat Simple_repeat 1 118 0 494 286 30 12 chr12 29414159 29414327 -114868162 - L1MEc LINE L1 -4363 2033 1863 * 3020 241 61 18 chr12 29414323 29415654 -114866835 - L1ME1 LINE L1 -27 6139 4767 1879 278 98 22 chr12 29415650 29416638 -114865851 - L1MEc LINE L1 -4524 1872 810 * 3583 168 41 10 chr12 29416671 29417350 -114865139 - L1MC3 LINE L1 -21 7764 7065 2663 257 20 14 chr12 29417390 29418099 -114864390 - L1MEc LINE L1 -5652 744 32 669 134 0 0 chr12 29419166 29419263 -114863226 + FLAM_C SINE Alu 21 117 -26 240 59 0 0 chr12 29419263 29419297 -114863192 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 374 0 22 0 chr12 29419304 29419350 -114863139 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 1423 220 13 13 chr12 29419350 29419655 -114862834 + AluJo SINE Alu 3 307 -5 2245 149 142 0 chr12 29422178 29422593 -114859896 - MER101 LTR ERV1 0 474 1 333 333 103 0 chr12 29423035 29423209 -114859280 - MIR SINE MIR -65 197 6 2313 176 83 16 chr12 29425046 29425597 -114856892 - Charlie1a DNA MER1_type 0 1455 868 1706 249 55 31 chr12 29425653 29426203 -114856286 - Charlie1a DNA MER1_type -892 563 1 191 284 64 64 chr12 29426543 29426652 -114855837 + L3 LINE CR1 1447 1555 -22 180 0 0 0 chr12 29427274 29427294 -114855195 + (CATATA)n Simple_repeat Simple_repeat 5 24 0 28 0 0 0 chr12 29427699 29427727 -114854762 + AT_rich Low_complexity Low_complexity 1 28 0 5087 79 6 0 chr12 29428966 29429638 -114852851 + L1PA7 LINE L1 5479 6154 0 1504 109 73 44 chr12 29430320 29430452 -114852037 - Tigger2 DNA MER2_type -102 2616 2489 2328 117 0 0 chr12 29430452 29430759 -114851730 + AluSx SINE Alu 1 307 -5 1504 109 73 44 chr12 29430759 29430901 -114851588 - Tigger2 DNA MER2_type -229 2489 2334 677 207 0 0 chr12 29430928 29431039 -114851450 + Tigger2 DNA MER2_type 2592 2702 -16 360 0 0 0 chr12 29431039 29431079 -114851410 + (CA)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr12 29431079 29431103 -114851386 + AT_rich Low_complexity Low_complexity 1 24 0 292 320 72 40 chr12 29432007 29432132 -114850357 - L2 LINE L2 -1 3271 3143 24 32 0 0 chr12 29432610 29432641 -114849848 + AT_rich Low_complexity Low_complexity 1 31 0 294 356 111 19 chr12 29432659 29432875 -114849614 + MIR SINE MIR 20 255 -7 278 283 87 51 chr12 29433069 29433207 -114849282 - MIR SINE MIR -63 145 3 1805 159 12 77 chr12 29434400 29434814 -114847675 + MLT1B LTR MaLR 4 390 0 662 303 45 5 chr12 29434821 29435042 -114847447 - MIR SINE MIR -13 249 20 1804 141 25 0 chr12 29436173 29436473 -114846016 + AluSx SINE Alu 1 307 0 312 70 0 0 chr12 29437439 29437482 -114845007 + (T)n Simple_repeat Simple_repeat 1 43 0 29 0 0 0 chr12 29437534 29437563 -114844926 + AT_rich Low_complexity Low_complexity 1 29 0 382 370 29 13 chr12 29437629 29437867 -114844622 - HAL1 LINE L1 -1158 1349 1108 11016 140 28 60 chr12 29437881 29438202 -114844287 - Tigger1 DNA MER2_type -310 2108 1778 2262 84 3 7 chr12 29438202 29438500 -114843989 - AluY SINE Alu -3 308 12 11016 140 28 60 chr12 29438500 29440357 -114842132 - Tigger1 DNA MER2_type -640 1778 1 411 319 51 7 chr12 29440390 29440528 -114841961 - MER5B DNA MER1_type -11 167 24 353 385 62 5 chr12 29441230 29441425 -114841064 - MIR SINE MIR -55 207 2 1195 270 87 37 chr12 29442667 29443148 -114839341 + LTR33 LTR ERVL 1 505 -16 950 148 31 0 chr12 29443230 29443392 -114839097 - L1MC3 LINE L1 -1340 6445 6279 25 0 0 0 chr12 29443430 29443455 -114839034 + AT_rich Low_complexity Low_complexity 1 25 0 2128 120 0 37 chr12 29444942 29445266 -114837223 + AluSx SINE Alu 1 312 0 275 365 93 0 chr12 29445284 29445391 -114837098 - L2 LINE L2 0 3272 3156 879 305 34 36 chr12 29445551 29445945 -114836544 - LTR16A1 LTR ERVL 0 481 83 201 328 52 26 chr12 29446071 29446187 -114836302 - L2 LINE L2 -222 3050 2932 414 200 19 0 chr12 29446261 29446366 -114836123 - L1MC5 LINE L1 -176 7785 7679 8754 142 20 15 chr12 29446366 29447236 -114835253 + Tigger1 DNA MER2_type 1 881 -1537 5712 97 49 5 chr12 29447236 29448200 -114834289 + L1PB1 LINE L1 5147 6150 -1 8754 142 20 15 chr12 29448200 29448760 -114833729 + Tigger1 DNA MER2_type 881 1437 -981 468 187 0 0 chr12 29448756 29448831 -114833658 + Tigger1 DNA MER2_type 2344 2418 0 * 230 121 69 35 chr12 29448878 29448936 -114833553 - L1MC5 LINE L1 -298 7663 7604 5445 50 1 0 chr12 29448938 29449602 -114832887 - L1PA7 LINE L1 -4 6150 5486 203 258 22 22 chr12 29449613 29449702 -114832787 + (TA)n Simple_repeat Simple_repeat 2 90 0 644 232 53 53 chr12 29449712 29450031 -114832458 - L1MC5 LINE L1 -385 7576 7258 * 846 269 105 56 chr12 29450010 29450583 -114831906 + L1MC4a LINE L1 5566 6166 -1642 23 0 0 0 chr12 29450596 29450619 -114831870 + AT_rich Low_complexity Low_complexity 1 23 0 478 260 100 50 chr12 29452834 29453034 -114829455 + MER63A DNA MER1_type 1 210 0 976 297 73 33 chr12 29453101 29453525 -114828964 + MLT1J2 LTR MaLR 9 449 -1 410 267 64 74 chr12 29453536 29453989 -114828500 - L1 LINE L1 -2653 3493 3052 264 185 0 0 chr12 29454110 29454164 -114828325 + (CA)n Simple_repeat Simple_repeat 2 55 0 22 35 0 0 chr12 29454588 29454617 -114827872 + AT_rich Low_complexity Low_complexity 1 29 0 558 245 180 55 chr12 29456017 29456217 -114826272 + MIR SINE MIR 28 252 -10 2950 70 8 0 chr12 29456539 29456911 -114825578 + THE1C LTR MaLR 1 375 0 2039 148 0 7 chr12 29457188 29457493 -114824996 - AluSx SINE Alu -9 303 1 24 32 0 0 chr12 29457691 29457722 -114824767 + AT_rich Low_complexity Low_complexity 1 31 0 310 328 41 51 chr12 29457761 29457956 -114824533 - HAL1b LINE L1 -1051 297 105 655 294 16 102 chr12 29457981 29458362 -114824127 + L2 LINE L2 295 642 -2672 703 221 37 5 chr12 29458378 29458568 -114823921 - L1M4c LINE L1 -4883 1501 1306 42 20 0 0 chr12 29458574 29458623 -114823866 + AT_rich Low_complexity Low_complexity 1 49 0 462 134 0 0 chr12 29458623 29458690 -114823799 - AluJb SINE Alu -194 118 52 1101 158 91 10 chr12 29458690 29458899 -114823590 + AluJb SINE Alu 64 289 -23 306 337 114 10 chr12 29459751 29459944 -114822545 - MIR SINE MIR -16 246 34 1797 159 7 26 chr12 29460628 29460936 -114821553 - AluJb SINE Alu -6 306 5 721 181 42 14 chr12 29461431 29461575 -114820914 - MER58A DNA MER1_type -3 221 74 1196 270 24 15 chr12 29461666 29462003 -114820486 + MER93a LTR ERV1 63 402 0 388 191 12 48 chr12 29462003 29462087 -114820402 - MER58A DNA MER1_type -26 81 1 261 195 0 0 chr12 29462259 29462300 -114820189 + MSTB LTR MaLR 261 301 -125 207 114 0 0 chr12 29464202 29464237 -114818252 + (CCA)n Simple_repeat Simple_repeat 3 37 0 252 0 0 0 chr12 29464238 29464266 -114818223 + (CA)n Simple_repeat Simple_repeat 2 29 0 7425 35 6 0 chr12 29464430 29465359 -114817130 - L1PA3 LINE L1 0 6155 5224 188 364 15 15 chr12 29465387 29465453 -114817036 - L2 LINE L2 -50 3222 3157 2445 134 29 26 chr12 29465486 29465905 -114816584 + MSTB LTR MaLR 2 421 -5 966 264 18 0 chr12 29465911 29466131 -114816358 + MER58A DNA MER1_type 1 224 0 1061 234 43 40 chr12 29466210 29466365 -114816124 + MLT1J LTR MaLR 3 156 -355 2246 120 27 33 chr12 29466365 29466731 -114815758 - THE1B LTR MaLR 0 364 1 10072 109 37 37 chr12 29466731 29468311 -114814178 - THE1B-int LTR MaLR 0 1580 1 2488 129 3 3 chr12 29468311 29468675 -114813814 - THE1B LTR MaLR 0 364 1 1061 234 43 40 chr12 29468675 29468820 -114813669 + MLT1J LTR MaLR 155 306 -205 309 186 0 0 chr12 29468857 29468927 -114813562 - L1M2 LINE L1 -832 5459 5390 8092 172 34 13 chr12 29468940 29470309 -114812180 - L1M2 LINE L1 -887 5259 3849 1948 143 26 54 chr12 29470309 29470695 -114811794 + THE1C LTR MaLR 1 375 0 8092 172 34 13 chr12 29470695 29470967 -114811522 - L1M2 LINE L1 -2297 3849 3584 1693 254 39 16 chr12 29471031 29471523 -114810966 - L1ME3A LINE L1 -52 6118 5616 1648 113 142 10 chr12 29471690 29472001 -114810488 + L1MA3 LINE L1 5954 6305 0 459 244 56 0 chr12 29472054 29472251 -114810238 + L1MEc LINE L1 2087 2294 -4102 319 337 34 29 chr12 29473369 29473544 -114808945 - MER20B DNA MER1_type -606 177 2 1813 182 30 43 chr12 29473554 29473949 -114808540 - MLT1B LTR MaLR 0 390 1 1082 246 3 42 chr12 29473990 29474275 -114808214 - MER93b LTR ERV1 -2 371 98 309 204 0 120 chr12 29474459 29474567 -114807922 + MLT1L LTR MaLR 193 287 -328 1092 208 93 28 chr12 29474837 29475196 -114807293 - L1MEc LINE L1 -2757 3458 3069 1357 224 29 45 chr12 29475196 29475576 -114806913 + MLT1A2 LTR MaLR 1 374 0 1092 208 93 28 chr12 29475576 29475615 -114806874 - L1MEc LINE L1 -3146 3069 3034 372 225 108 8 chr12 29475618 29475738 -114806751 - L1MEc LINE L1 -3296 2919 2788 1199 231 71 47 chr12 29475791 29476160 -114806329 - L1MEc LINE L1 -3522 2693 2334 1797 176 14 43 chr12 29476160 29476372 -114806117 + L1PA15 LINE L1 5829 6029 -136 1859 174 0 25 chr12 29476372 29476688 -114805801 + AluSx SINE Alu 1 308 -4 1797 176 14 43 chr12 29476688 29476822 -114805667 + L1PA15 LINE L1 6029 6165 0 1199 231 71 47 chr12 29476822 29476914 -114805575 - L1MEc LINE L1 -3881 2334 2246 7770 20 0 0 chr12 29476914 29477941 -114804548 + L1PA3 LINE L1 5128 6154 -1 1199 231 71 47 chr12 29477941 29478330 -114804159 - L1MEc LINE L1 -3969 2246 1650 1231 200 33 61 chr12 29478356 29478686 -114803803 + MLT2D LTR ERVL 92 412 -2 415 237 29 36 chr12 29478726 29478865 -114803624 - L1MEc LINE L1 -6223 173 36 239 316 63 0 chr12 29479860 29479939 -114802550 + L2 LINE L2 3227 3310 -3 474 233 134 78 chr12 29480064 29480180 -114802309 + MIR SINE MIR 16 124 -138 2420 76 0 10 chr12 29480180 29480494 -114801995 + AluY SINE Alu 1 311 0 474 233 134 78 chr12 29480494 29480609 -114801880 + MIR SINE MIR 124 260 -2 326 0 74 0 chr12 29481236 29481290 -114801199 + (TA)n Simple_repeat Simple_repeat 1 58 0 503 248 9 0 chr12 29481741 29481850 -114800639 + MER81 DNA DNA 1 110 -4 546 16 0 0 chr12 29482150 29482213 -114800276 + (TG)n Simple_repeat Simple_repeat 2 64 0 22 99 0 0 chr12 29482442 29482513 -114799976 + AT_rich Low_complexity Low_complexity 1 71 0 725 137 8 0 chr12 29483273 29483397 -114799092 + L1P LINE L1 4653 4777 -1369 304 267 17 52 chr12 29483914 29484030 -114798459 - MIR SINE MIR -6 256 145 1335 206 86 24 chr12 29484268 29484641 -114797848 + MSTD LTR MaLR 1 396 0 45 19 0 0 chr12 29485260 29485312 -114797177 + AT_rich Low_complexity Low_complexity 1 52 0 210 220 0 20 chr12 29486627 29486677 -114795812 - L2 LINE L2 0 3272 3224 636 222 38 70 chr12 29486978 29487163 -114795326 - MER91B DNA MER1_type -10 180 2 827 264 66 14 chr12 29487387 29487735 -114794754 - L1MC4 LINE L1 -124 7918 7553 241 239 119 34 chr12 29488626 29488752 -114793737 + MIR SINE MIR 22 154 -63 2299 90 3 10 chr12 29489083 29489384 -114793105 - AluSg SINE Alu -11 299 1 1068 152 6 0 chr12 29490624 29490789 -114791700 - AluJb SINE Alu -60 252 87 4156 61 0 0 chr12 29494794 29495366 -114787123 - L1P LINE L1 -4481 1665 1094 797 61 18 0 chr12 29495348 29495462 -114787027 - L1P LINE L1 -6030 116 1 * 1004 211 57 8 chr12 29495563 29495828 -114786661 - MER33 DNA MER1_type -46 278 1 315 96 0 0 chr12 29496201 29496253 -114786236 + (TC)n Simple_repeat Simple_repeat 1 52 0 194 250 0 15 chr12 29498882 29498950 -114783539 + CT-rich Low_complexity Low_complexity 4 70 0 216 143 20 20 chr12 29498984 29499033 -114783456 + CT-rich Low_complexity Low_complexity 1 49 0 303 290 10 20 chr12 29499047 29499147 -114783342 + CT-rich Low_complexity Low_complexity 2 100 0 2255 113 3 13 chr12 29499284 29499595 -114782894 - AluSx SINE Alu -3 309 2 412 302 149 36 chr12 29500394 29500669 -114781820 + L3 LINE CR1 1155 1460 -117 1447 179 0 82 chr12 29501084 29501274 -114781215 - AluJb SINE Alu 0 312 161 360 0 0 0 chr12 29501274 29501314 -114781175 + (TA)n Simple_repeat Simple_repeat 2 41 0 1447 179 0 82 chr12 29501314 29501463 -114781026 - AluJb SINE Alu -151 161 1 23 33 0 0 chr12 29502635 29502665 -114779824 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr12 29503186 29503216 -114779273 + AT_rich Low_complexity Low_complexity 1 30 0 435 269 108 7 chr12 29505185 29505357 -114777132 - MIR SINE MIR -59 203 23 21 0 0 0 chr12 29505621 29505642 -114776847 + AT_rich Low_complexity Low_complexity 1 21 0 253 331 95 34 chr12 29507176 29507324 -114775165 + MIR3 SINE MIR 2 158 -50 5397 40 1 4 chr12 29507590 29508281 -114774208 - L1PA3 LINE L1 -141 6014 5326 285 250 138 59 chr12 29508342 29508494 -114773995 - MER5B DNA MER1_type -14 164 1 5587 28 3 0 chr12 29509012 29509987 -114772502 - L1P1 LINE L1 -503 5652 4674 290 219 0 31 chr12 29510491 29510555 -114771934 + HsTC2 DNA Tc2 80 141 -1757 * 745 210 136 18 chr12 29510554 29510838 -114771651 + HsTC2 DNA Tc2 1282 1792 -106 2102 102 0 24 chr12 29510858 29511153 -114771336 + AluY SINE Alu 15 302 -9 2976 228 80 27 chr12 29511401 29512759 -114769730 + L1M1 LINE L1 3092 4536 -3029 386 321 34 83 chr12 29513335 29513600 -114768889 + MIR SINE MIR 10 261 -1 392 137 0 27 chr12 29514017 29514090 -114768399 - THE1C LTR MaLR 0 375 305 1186 133 0 0 chr12 29514215 29514380 -114768109 + AluSg/x SINE Alu 139 303 -9 243 146 0 0 chr12 29514917 29514958 -114767531 + (TA)n Simple_repeat Simple_repeat 1 41 0 232 49 73 0 chr12 29514986 29515027 -114767462 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 222 128 0 0 chr12 29515091 29515130 -114767359 + (TA)n Simple_repeat Simple_repeat 1 39 0 826 180 47 33 chr12 29515872 29516083 -114766406 - L1MA7 LINE L1 -212 6079 5866 501 265 74 6 chr12 29516098 29516260 -114766229 - MIR SINE MIR -39 223 51 22 56 0 0 chr12 29516774 29516810 -114765679 + AT_rich Low_complexity Low_complexity 1 36 0 725 134 12 134 chr12 29517391 29517562 -114764927 - AluSq/x SINE Alu -163 150 1 486 219 48 9 chr12 29517913 29518018 -114764471 + L2 LINE L2 3205 3313 0 407 174 0 22 chr12 29518261 29518353 -114764136 + CT-rich Low_complexity Low_complexity 3 92 0 1043 172 5 21 chr12 29518389 29518575 -114763914 - AluJb SINE Alu -36 276 94 186 191 0 48 chr12 29518723 29518765 -114763724 - L2 LINE L2 -2921 393 354 22 0 0 0 chr12 29519171 29519193 -114763296 + AT_rich Low_complexity Low_complexity 1 22 0 2225 110 0 7 chr12 29521630 29521931 -114760558 + AluSx SINE Alu 1 299 -13 407 208 85 39 chr12 29522093 29522223 -114760266 - MER63A DNA MER1_type 0 210 75 2342 165 70 6 chr12 29522697 29523194 -114759295 + L1PB4 LINE L1 5628 6156 0 200 253 0 84 chr12 29523400 29523483 -114759006 + MIR SINE MIR 36 111 -151 291 316 66 57 chr12 29524050 29524278 -114758211 - MLT1H LTR MaLR -199 350 121 642 270 70 11 chr12 29524367 29524737 -114757752 - L1M4 LINE L1 -743 5403 5012 38110 36 56 1 chr12 29524873 29530697 -114751792 + L1PA2 LINE L1 3 6153 -2 25 0 0 0 chr12 29531591 29531616 -114750873 + AT_rich Low_complexity Low_complexity 1 25 0 180 245 38 0 chr12 29531855 29531908 -114750581 + L3 LINE CR1 528 582 -995 685 133 46 67 chr12 29531959 29532154 -114750335 + L1MA7 LINE L1 6100 6290 -1 267 362 55 36 chr12 29532426 29532733 -114749756 - L2 LINE L2 -1230 2084 1772 1766 185 74 60 chr12 29533496 29533983 -114748506 - MLT1D LTR MaLR 0 505 12 2248 123 0 0 chr12 29534087 29534389 -114748100 - AluSx SINE Alu -10 302 1 417 66 0 0 chr12 29537852 29537913 -114744576 + (TG)n Simple_repeat Simple_repeat 2 62 0 291 233 55 110 chr12 29538434 29538506 -114743983 + MIR3 SINE MIR 61 123 -85 240 59 0 0 chr12 29538506 29538540 -114743949 + (TG)n Simple_repeat Simple_repeat 2 35 0 291 233 55 110 chr12 29538540 29538613 -114743876 + MIR3 SINE MIR 123 198 -10 615 290 28 16 chr12 29538685 29538940 -114743549 - MIR SINE MIR -3 259 2 317 341 73 55 chr12 29539915 29540079 -114742410 + L2 LINE L2 3091 3257 -15 386 282 8 16 chr12 29540384 29540508 -114741981 - MLT1H LTR MaLR -389 160 38 776 218 19 51 chr12 29542638 29542854 -114739635 - MER3 DNA MER1_type 0 209 1 427 254 8 74 chr12 29543735 29543857 -114738632 + MIR SINE MIR 2 115 -147 1118 181 25 137 chr12 29543925 29544093 -114738396 + MLT1B LTR MaLR 1 99 -291 2008 133 3 17 chr12 29544093 29544395 -114738094 + AluSg SINE Alu 1 298 -12 1118 181 25 137 chr12 29544395 29544629 -114737860 + MLT1B LTR MaLR 99 358 -32 3542 168 31 31 chr12 29544629 29545330 -114737159 + MER44D DNA MER2_type 1 701 -4 664 152 9 0 chr12 29545330 29545442 -114737047 - L1MC/D LINE L1 -560 5784 5672 463 201 71 24 chr12 29547386 29547555 -114734934 + MER96B DNA MER1_type? 2 178 -239 270 180 0 0 chr12 29547836 29547886 -114734603 + MER96B DNA MER1_type? 193 242 -175 1982 106 0 46 chr12 29548139 29548442 -114734047 + AluSg SINE Alu 1 289 -21 5287 146 12 20 chr12 29548771 29549696 -114732793 + MER49 LTR ERV1 5 921 -2 1251 233 136 17 chr12 29549965 29550385 -114732104 - MLT1E LTR MaLR -2 591 122 1119 38 11 48 chr12 29550411 29550597 -114731892 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1143 80 23 0 chr12 29550618 29550794 -114731695 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 995 182 0 0 chr12 29550810 29550986 -114731503 + MER46A DNA MER2_type 59 234 -2 27 29 0 0 chr12 29551212 29551246 -114731243 + AT_rich Low_complexity Low_complexity 1 34 0 707 244 15 4 chr12 29551282 29551447 -114731042 - MIR SINE MIR -31 231 67 2243 160 57 0 chr12 29551751 29552157 -114730332 - MSTB1 LTR MaLR 0 432 4 25 31 0 0 chr12 29552208 29552240 -114730249 + AT_rich Low_complexity Low_complexity 1 32 0 326 270 122 41 chr12 29552284 29552480 -114730009 + MIR SINE MIR 1 212 -50 5037 101 40 6 chr12 29552814 29553590 -114728899 + L1MA3 LINE L1 5504 6305 0 1297 178 0 13 chr12 29553761 29553997 -114728492 + MER46A DNA MER2_type 1 233 -3 24 0 0 0 chr12 29554925 29554949 -114727540 + AT_rich Low_complexity Low_complexity 1 24 0 1071 212 149 70 chr12 29555681 29555870 -114726619 + MLT2B1 LTR ERVL 1 174 -346 408 71 0 0 chr12 29555870 29555926 -114726563 + (CA)n Simple_repeat Simple_repeat 1 56 0 1071 212 149 70 chr12 29555926 29556172 -114726317 + MLT2B1 LTR ERVL 174 480 -40 536 106 11 0 chr12 29556172 29556266 -114726223 + (TA)n Simple_repeat Simple_repeat 2 96 0 1071 212 149 70 chr12 29556266 29556311 -114726178 + MLT2B1 LTR ERVL 480 520 0 575 242 96 32 chr12 29556395 29556676 -114725813 - L1ME4a LINE L1 -203 5918 5620 245 337 11 11 chr12 29556820 29556909 -114725580 + MER5B DNA MER1_type 89 177 -1 502 167 158 0 chr12 29557841 29557955 -114724534 + L1MC2 LINE L1 6202 6333 -11 186 309 31 52 chr12 29557966 29558063 -114724426 - MIR SINE MIR -85 177 83 333 47 0 0 chr12 29558843 29558886 -114723603 + (T)n Simple_repeat Simple_repeat 1 43 0 605 319 4 23 chr12 29560473 29560736 -114721753 + HAL1 LINE L1 1533 1790 -717 638 257 182 75 chr12 29561300 29561783 -114720706 - LTR67 LTR ERVL -4 553 19 384 22 0 0 chr12 29561785 29561830 -114720659 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 400 274 109 70 chr12 29561840 29562070 -114720419 + HAL1 LINE L1 2192 2430 -77 22 35 0 0 chr12 29562778 29562807 -114719682 + AT_rich Low_complexity Low_complexity 1 29 0 1879 157 3 20 chr12 29563258 29563564 -114718925 + AluJo SINE Alu 1 301 -11 303 266 147 18 chr12 29564400 29564509 -114717980 + MIR3 SINE MIR 85 207 -1 939 144 124 28 chr12 29564731 29564981 -114717508 + L1MB8 LINE L1 5708 5981 -197 207 0 0 0 chr12 29565201 29565224 -114717265 + (T)n Simple_repeat Simple_repeat 1 23 0 789 208 74 27 chr12 29565224 29565500 -114716989 - MER39 LTR ERV1 -16 642 304 342 310 76 6 chr12 29565539 29565697 -114716792 - MER34 LTR ERV1 -372 170 2 718 169 11 45 chr12 29565744 29565922 -114716567 + L1MB8 LINE L1 6007 6178 0 255 260 0 39 chr12 29566993 29567070 -114715419 + MER5B DNA MER1_type 105 178 0 1672 198 55 38 chr12 29567233 29567709 -114714780 - Charlie1b DNA MER1_type -7 516 33 188 281 24 49 chr12 29567756 29567838 -114714651 - MIR SINE MIR -71 137 58 27 73 0 0 chr12 29569479 29569534 -114712955 + AT_rich Low_complexity Low_complexity 1 55 0 861 215 23 6 chr12 29570924 29571101 -114711388 + MER5A DNA MER1_type 1 180 -9 889 93 7 22 chr12 29571487 29571626 -114710863 - AluY SINE Alu 0 311 175 498 152 0 0 chr12 29571955 29572034 -114710455 + LTR32 LTR ERVL 14 92 -379 657 188 6 56 chr12 29572088 29572248 -114710241 + LTR32 LTR ERVL 319 470 -1 285 254 110 51 chr12 29572360 29572478 -114710011 - MIR SINE MIR -4 258 134 1059 157 10 25 chr12 29573032 29573229 -114709260 - MER51D LTR ERV1 0 657 464 542 233 13 13 chr12 29573568 29573718 -114708771 - MER34-int LTR ERV1 0 7816 7667 1227 188 87 58 chr12 29573985 29574577 -114707912 - MER52-int LTR ERV1 -2506 4170 1772 281 111 42 69 chr12 29574662 29574734 -114707755 - MER52-int LTR ERV1 -6329 1791 1722 466 321 44 22 chr12 29575190 29575485 -114707004 - MER52-int LTR ERV1 -5051 1956 1544 317 146 0 0 chr12 29575611 29575659 -114706830 - MER52-int LTR ERV1 -7041 775 728 933 186 26 26 chr12 29576432 29576626 -114705863 - MER51D LTR ERV1 0 657 464 376 271 72 58 chr12 29577344 29577635 -114704854 + L1MC/D LINE L1 5351 5645 -2163 825 305 65 11 chr12 29578103 29578457 -114704032 - MLT1K LTR MaLR 0 588 216 2341 142 195 45 chr12 29578465 29578999 -114703490 + LTR18B LTR ERVL 1 614 0 1550 164 11 4 chr12 29579032 29579300 -114703189 + HERVL18 LTR ERVL 4 273 -5774 8430 165 5 7 chr12 29579337 29580791 -114701698 + HERVL18 LTR ERVL 939 2452 -3595 1103 235 4 6 chr12 29580790 29581072 -114701417 + HERVL18 LTR ERVL 2720 3076 -2971 * 3702 186 3 3 chr12 29581086 29581714 -114700775 + HERVL18 LTR ERVL 2952 3579 -2468 9720 159 22 1 chr12 29581716 29583336 -114699153 + HERVL18 LTR ERVL 4394 6047 0 2552 155 141 34 chr12 29583490 29584045 -114698444 + LTR18B LTR ERVL 1 614 0 2666 148 21 48 chr12 29584161 29584751 -114697738 - MER51A LTR ERV1 0 634 1 1761 168 37 0 chr12 29585815 29586113 -114696376 + AluJb SINE Alu 1 309 -3 201 121 0 0 chr12 29586611 29586644 -114695845 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 279 288 129 30 chr12 29586669 29586801 -114695688 + MIR SINE MIR 84 228 -34 610 154 31 154 chr12 29586990 29587077 -114695412 - MER3 DNA MER1_type -9 200 104 647 216 0 0 chr12 29587077 29587202 -114695287 + FLAM_C SINE Alu 2 126 -7 610 154 31 154 chr12 29587202 29587341 -114695148 - MER3 DNA MER1_type -105 104 2 24 0 0 0 chr12 29588339 29588363 -114694126 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 29588662 29588691 -114693798 + AT_rich Low_complexity Low_complexity 1 29 0 2544 186 67 35 chr12 29590183 29590221 -114692268 - MLT2B3 LTR ERVL 0 554 519 677 53 11 0 chr12 29590221 29590315 -114692174 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 2544 186 67 35 chr12 29590315 29590813 -114691676 - MLT2B3 LTR ERVL -35 519 1 328 294 201 22 chr12 29591751 29591935 -114690554 + MIR SINE MIR 46 262 0 1801 215 46 63 chr12 29592004 29592100 -114690389 - LTR40a LTR ERVL -3 516 420 2397 88 7 0 chr12 29592100 29592408 -114690081 + AluY SINE Alu 1 310 -1 1801 215 46 63 chr12 29592408 29592836 -114689653 - LTR40a LTR ERVL -99 420 1 1797 288 80 54 chr12 29592883 29592903 -114689586 + L1MEc LINE L1 45 63 -6333 523 55 96 0 chr12 29592903 29592976 -114689513 - MADE1 DNA Mariner 0 80 1 1797 288 80 54 chr12 29592976 29594245 -114688244 + L1MEc LINE L1 63 1367 -5029 417 301 49 21 chr12 29594253 29594539 -114687950 + L1MEc LINE L1 1428 1721 -4675 296 269 118 0 chr12 29594540 29594632 -114687857 - MER2 DNA MER2_type 0 345 243 336 143 16 16 chr12 29594632 29594695 -114687794 + LTR9 LTR ERV1 1 63 -549 1223 177 14 23 chr12 29594805 29595025 -114687464 + HUERS-P3 LTR ERV1 8701 8918 -1 2917 176 68 23 chr12 29595028 29595641 -114686848 + LTR9B LTR ERV1 4 644 0 1431 176 17 0 chr12 29595644 29595883 -114686606 - MER2 DNA MER2_type -102 243 1 627 261 33 68 chr12 29595901 29596114 -114686375 + L1MEc LINE L1 1739 1958 -4438 2140 98 28 0 chr12 29596114 29596400 -114686089 + AluSc SINE Alu 10 303 -6 627 261 33 68 chr12 29596400 29596669 -114685820 + L1MEc LINE L1 1958 2204 -4192 1322 259 84 50 chr12 29596683 29597197 -114685292 + L1MEc LINE L1 2256 2804 -3411 1869 105 72 56 chr12 29597197 29597502 -114684987 + AluSg SINE Alu 1 310 0 1322 259 84 50 chr12 29597502 29597724 -114684765 + L1MEc LINE L1 2804 3017 -3198 5179 224 16 22 chr12 29597742 29599408 -114683081 + L1PA15 LINE L1 1123 2798 -3999 2893 249 42 11 chr12 29599410 29600461 -114682028 - L1M4 LINE L1 -2786 3360 2277 3697 48 0 2 chr12 29600466 29600920 -114681569 - L1PA5 LINE L1 -13 6141 5689 4708 50 2 0 chr12 29600920 29601819 -114680670 + L1PA5 LINE L1 4797 5697 -457 * 14411 186 11 23 chr12 29601803 29604532 -114677957 + L1PA15 LINE L1 2778 5536 -1280 2106 152 25 0 chr12 29604532 29604887 -114677602 + THE1B LTR MaLR 1 364 0 14411 186 11 23 chr12 29604887 29606074 -114676415 + L1PA15 LINE L1 5536 6660 -156 2185 115 3 0 chr12 29606074 29606379 -114676110 + AluSp SINE Alu 6 311 -2 14411 186 11 23 chr12 29606379 29606530 -114675959 + L1PA15 LINE L1 6660 6811 -5 723 274 141 5 chr12 29606528 29606974 -114675515 + L1M4 LINE L1 2944 3450 -2696 * 1172 259 11 32 chr12 29606975 29607059 -114675430 + L1MCc LINE L1 18 102 -6321 207 0 0 0 chr12 29607059 29607082 -114675407 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1172 259 11 32 chr12 29607082 29607368 -114675121 + L1MCc LINE L1 102 380 -6043 2101 109 0 33 chr12 29607368 29607671 -114674818 - AluSq SINE Alu 0 313 21 5673 231 47 51 chr12 29607671 29607773 -114674716 - L1M4 LINE L1 -592 5582 5481 2252 126 0 0 chr12 29607773 29608083 -114674406 - AluSx SINE Alu -2 310 1 5673 231 47 51 chr12 29608083 29610312 -114672177 - L1M4 LINE L1 -693 5481 3267 513 353 140 25 chr12 29610339 29610968 -114671521 + L2 LINE L2 2031 2731 -583 191 267 10 69 chr12 29611450 29611551 -114670938 - L2 LINE L2 -251 3021 2927 641 134 9 0 chr12 29612226 29612338 -114670151 + (TCTA)n Simple_repeat Simple_repeat 4 116 0 314 343 69 23 chr12 29612808 29613024 -114669465 + L3b LINE CR1 1243 1468 -115 28 29 0 0 chr12 29613218 29613253 -114669236 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr12 29613389 29613431 -114669058 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr12 29613705 29613740 -114668749 + AT_rich Low_complexity Low_complexity 1 35 0 1019 39 13 32 chr12 29614319 29614474 -114668015 + (GAAA)n Simple_repeat Simple_repeat 1 152 0 252 0 0 0 chr12 29615631 29615659 -114666830 + (TG)n Simple_repeat Simple_repeat 1 28 0 365 289 74 32 chr12 29615664 29615854 -114666635 + MIR3 SINE MIR 4 201 -7 186 221 15 73 chr12 29616933 29617001 -114665488 - L2 LINE L2 -4 3309 3246 190 286 0 0 chr12 29617071 29617120 -114665369 - L2 LINE L2 -88 3225 3177 280 290 56 31 chr12 29617273 29617435 -114665054 + L2 LINE L2 1890 2055 -1259 309 352 102 67 chr12 29617446 29617878 -114664611 + L2 LINE L2 2371 2817 -497 269 169 17 0 chr12 29621008 29621067 -114661422 + GA-rich Low_complexity Low_complexity 1 60 0 288 0 0 0 chr12 29621532 29621564 -114660925 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 1615 220 95 64 chr12 29623433 29624256 -114658233 - Charlie2 DNA MER1_type 0 2862 2015 416 264 54 31 chr12 29624370 29624499 -114657990 - MER34 LTR ERV1 -30 512 381 562 87 10 48 chr12 29624552 29624655 -114657834 - L1PA3 LINE L1 0 6155 6057 374 270 63 9 chr12 29624762 29624873 -114657616 - MER34 LTR ERV1 -45 497 381 2124 20 0 0 chr12 29624929 29625176 -114657313 - L1PA3 LINE L1 0 6155 5909 377 290 62 44 chr12 29625310 29625582 -114656907 - MER34 LTR ERV1 -265 277 1 184 320 21 31 chr12 29625597 29625694 -114656795 - L2 LINE L2 -1269 2045 1950 743 281 87 40 chr12 29626016 29626084 -114656405 - L1M4 LINE L1 -1592 4554 4491 1800 175 3 7 chr12 29626084 29626375 -114656114 - AluJb SINE Alu -22 290 1 743 281 87 40 chr12 29626375 29627187 -114655302 - L1M4 LINE L1 -1655 4491 3632 307 172 0 78 chr12 29627198 29627262 -114655227 + MER21B LTR ERV1 1 59 -804 2493 177 27 2 chr12 29627374 29627776 -114654713 + MER21B LTR ERV1 328 739 -124 573 260 101 28 chr12 29628023 29628311 -114654178 - L1M4 LINE L1 -2767 3379 3071 813 157 15 12 chr12 29628345 29628758 -114653731 + CT-rich Low_complexity Low_complexity 1 414 0 213 39 0 0 chr12 29628760 29628786 -114653703 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 345 298 51 34 chr12 29628825 29629003 -114653486 - HAL1 LINE L1 -1044 1463 1283 229 431 0 15 chr12 29630851 29630988 -114651501 + L3 LINE CR1 1066 1200 -377 323 297 110 26 chr12 29631434 29631589 -114650900 + MIR3 SINE MIR 41 208 0 912 325 8 0 chr12 29632537 29632786 -114649703 - MIR SINE MIR -4 258 8 667 232 0 0 chr12 29632899 29633024 -114649465 - FLAM_C SINE Alu -18 125 1 303 111 111 0 chr12 29634416 29634470 -114648019 + MLT1C LTR MaLR 37 96 -371 1790 192 101 16 chr12 29634521 29634949 -114647540 - MLT1C LTR MaLR -3 464 1 404 287 8 31 chr12 29635303 29635432 -114647057 + L2 LINE L2 3188 3313 0 2325 100 7 0 chr12 29635498 29635797 -114646692 + AluSx SINE Alu 1 301 -11 250 193 175 0 chr12 29635906 29635963 -114646526 + MIR3 SINE MIR 127 193 -15 228 297 64 59 chr12 29637145 29637347 -114645142 - L2 LINE L2 -36 3277 3075 1885 109 4 0 chr12 29639309 29639565 -114642924 - AluSx SINE Alu -55 257 1 265 350 55 32 chr12 29640619 29640839 -114641650 + MIR SINE MIR 38 262 0 587 354 70 34 chr12 29642049 29642637 -114639852 + L2 LINE L2 2063 2671 -643 220 346 122 56 chr12 29642842 29643056 -114639433 + L2 LINE L2 2864 3091 -181 2236 122 0 6 chr12 29643773 29644206 -114638283 + AluSx SINE Alu 3 433 0 630 285 40 24 chr12 29646524 29646773 -114635716 - MIR SINE MIR -7 255 3 236 266 0 31 chr12 29647201 29647265 -114635224 - MLT1K LTR MaLR -339 249 188 623 251 37 0 chr12 29647894 29648057 -114634432 + MLT1E1 LTR MaLR 93 261 -393 880 61 0 17 chr12 29648096 29648211 -114634278 - AluSg/x SINE Alu 0 310 198 403 309 30 121 chr12 29648267 29648698 -114633791 + L2 LINE L2 2875 3266 -6 220 150 17 50 chr12 29649042 29649102 -114633387 + (TA)n Simple_repeat Simple_repeat 2 59 0 349 263 33 59 chr12 29649126 29649278 -114633211 - MIR SINE MIR -102 160 13 22 0 0 0 chr12 29651065 29651087 -114631402 + AT_rich Low_complexity Low_complexity 1 22 0 3015 192 68 51 chr12 29651101 29652028 -114630461 - L1MB8 LINE L1 -38 6140 5198 308 358 108 50 chr12 29652134 29653162 -114629327 + L2 LINE L2 1816 2912 -402 1836 225 57 97 chr12 29653162 29653553 -114628936 - MLT1E1 LTR MaLR 0 654 300 2329 101 0 0 chr12 29653553 29653850 -114628639 + AluY SINE Alu 1 297 -14 1836 225 57 97 chr12 29653850 29654139 -114628350 - MLT1E1 LTR MaLR -354 300 1 308 358 108 50 chr12 29654139 29654193 -114628296 + L2 LINE L2 2912 2961 -353 6448 126 9 30 chr12 29654405 29655419 -114627070 - L1MA2 LINE L1 0 6304 5333 368 91 212 0 chr12 29655419 29655485 -114627004 - MADE1 DNA Mariner 0 80 1 6448 126 9 30 chr12 29655485 29655997 -114626492 - L1MA2 LINE L1 -971 5333 4812 301 258 125 16 chr12 29656905 29657033 -114625456 + L2 LINE L2 3172 3313 0 25 31 0 0 chr12 29657567 29657599 -114624890 + AT_rich Low_complexity Low_complexity 1 32 0 233 344 61 0 chr12 29657745 29657876 -114624613 + MIR3 SINE MIR 64 202 -6 408 277 8 0 chr12 29659273 29659392 -114623097 - MER103 DNA DNA -14 152 33 185 255 314 0 chr12 29660914 29661016 -114621473 + MIR SINE MIR 52 185 -77 960 218 10 0 chr12 29661902 29662108 -114620381 - MLT1C LTR MaLR -2 465 258 2053 136 72 20 chr12 29662108 29662454 -114620035 + THE1B LTR MaLR 1 364 0 10516 103 31 0 chr12 29662454 29663979 -114618510 + THE1B-int LTR MaLR 1 1572 -8 2121 130 72 17 chr12 29663987 29664332 -114618157 + THE1B LTR MaLR 1 364 0 1149 157 77 28 chr12 29664332 29664386 -114618103 - MLT1C LTR MaLR -205 262 212 381 43 0 0 chr12 29664386 29664433 -114618056 + (TG)n Simple_repeat Simple_repeat 2 48 0 1149 157 77 28 chr12 29664433 29664626 -114617863 - MLT1C LTR MaLR -255 212 3 181 301 0 36 chr12 29664960 29665043 -114617446 + L2 LINE L2 1944 2023 -1291 1718 175 146 13 chr12 29665046 29665424 -114617065 + MSTA LTR MaLR 1 428 0 7293 183 106 1 chr12 29665424 29666918 -114615571 + MSTA-int LTR MaLR 1 1651 0 1642 160 114 58 chr12 29666918 29667311 -114615178 + MSTA LTR MaLR 1 415 -13 315 391 99 18 chr12 29668413 29668868 -114613621 + L2 LINE L2 2240 2731 -583 1792 220 19 3 chr12 29670426 29670785 -114611704 - Tigger7 DNA MER2_type -2121 366 2 1643 233 139 28 chr12 29670796 29672084 -114610405 + L1M4 LINE L1 1321 2806 -3576 1973 146 0 7 chr12 29672084 29672378 -114610111 - AluSx SINE Alu -20 292 1 1643 233 139 28 chr12 29672378 29672521 -114609968 + L1M4 LINE L1 2806 2932 -3450 1244 191 22 4 chr12 29672516 29672789 -114609700 + L1M4 LINE L1 5538 5815 -605 * 6300 128 23 8 chr12 29674032 29675711 -114606778 - L1MA3 LINE L1 0 6305 4600 361 379 39 0 chr12 29675770 29675923 -114606566 + L2 LINE L2 2872 3030 -283 24 0 0 0 chr12 29676078 29676102 -114606387 + AT_rich Low_complexity Low_complexity 1 24 0 2109 136 0 0 chr12 29676109 29676411 -114606078 + AluSq SINE Alu 1 302 -11 781 256 89 117 chr12 29676444 29677013 -114605476 - L2 LINE L2 -5 3308 2700 404 148 0 0 chr12 29677013 29677074 -114605415 - AluS SINE Alu -223 90 30 781 256 89 117 chr12 29677074 29677239 -114605250 - L2 LINE L2 -613 2700 2532 324 208 56 96 chr12 29677243 29677368 -114605121 - MIR SINE MIR -11 251 132 693 263 84 20 chr12 29677433 29677806 -114604683 + LTR16A LTR ERVL 29 445 -12 21 0 0 0 chr12 29679761 29679782 -114602707 + AT_rich Low_complexity Low_complexity 1 21 0 2082 112 3 20 chr12 29680093 29680398 -114602091 - AluSx SINE Alu -10 302 3 829 289 45 4 chr12 29680525 29680767 -114601722 - MIR SINE MIR -1 261 10 312 277 181 46 chr12 29681328 29681566 -114600923 - L1ME3 LINE L1 -211 5951 5682 280 180 0 49 chr12 29681606 29681667 -114600822 + MER5B DNA MER1_type 8 65 -113 311 288 34 20 chr12 29681713 29681859 -114600630 - L1ME3 LINE L1 -519 5651 5504 2304 110 0 0 chr12 29681984 29682293 -114600196 - AluY SINE Alu -2 309 1 329 274 204 22 chr12 29682390 29682660 -114599829 + Tigger8 DNA MER2_type 206 524 -142 197 43 0 0 chr12 29683451 29683474 -114599015 + (A)n Simple_repeat Simple_repeat 1 23 0 272 297 7 39 chr12 29683670 29683825 -114598664 + GA-rich Low_complexity Low_complexity 4 153 0 * 296 316 11 52 chr12 29683804 29684060 -114598429 + G-rich Low_complexity Low_complexity 1 245 0 5293 176 29 37 chr12 29684194 29685447 -114597042 + MER57-int LTR ERV1 4579 5821 -1716 419 186 7 103 chr12 29685774 29685919 -114596570 + MER57-int LTR ERV1 5825 5955 -1582 764 315 59 44 chr12 29686829 29687238 -114595251 - L2 LINE L2 -76 3237 2823 369 43 29 29 chr12 29689511 29689580 -114592909 + (TTTA)n Simple_repeat Simple_repeat 2 168 0 2002 114 0 24 chr12 29689580 29689732 -114592757 - AluSx SINE Alu -1 351 197 1778 134 7 20 chr12 29689732 29690031 -114592458 - AluY SINE Alu -14 297 3 2002 114 0 24 chr12 29690031 29690167 -114592322 - AluSx SINE Alu -155 197 2 630 169 7 84 chr12 29690168 29690310 -114592179 - MER57-int LTR ERV1 -1582 5955 5825 5848 176 33 39 chr12 29690640 29691974 -114590515 - MER57-int LTR ERV1 -1327 3553 3408 1765 184 75 16 chr12 29693385 29693814 -114588675 - Charlie1 DNA MER1_type 0 2761 2308 438 208 67 8 chr12 29693810 29693930 -114588559 - Charlie1 DNA MER1_type -2591 170 44 * 2518 201 102 33 chr12 29694806 29695481 -114587008 + MER72 LTR ERV1 1 722 0 286 328 74 33 chr12 29695494 29695671 -114586818 + L2 LINE L2 2901 3060 -212 189 345 63 21 chr12 29696369 29696560 -114585929 + L2 LINE L2 1902 2100 -1214 267 345 90 0 chr12 29696629 29696774 -114585715 + MIR3 SINE MIR 36 193 -15 473 305 62 46 chr12 29696928 29697299 -114585190 + L1ME4a LINE L1 5528 5904 -217 790 323 75 52 chr12 29698001 29698584 -114583905 + L3 LINE CR1 263 859 -718 749 315 59 44 chr12 29699440 29699849 -114582640 - L2 LINE L2 -76 3237 2823 369 326 17 50 chr12 29701972 29702153 -114580336 - MIR SINE MIR -12 250 76 471 226 157 19 chr12 29702228 29702387 -114580102 + MER5A DNA MER1_type 9 189 0 212 285 146 15 chr12 29704473 29704603 -114577886 - MIR3 SINE MIR -54 154 8 256 309 40 96 chr12 29704954 29705203 -114577286 - MIR SINE MIR -14 248 14 204 314 29 29 chr12 29705255 29705360 -114577129 + L2 LINE L2 3188 3292 -21 2348 97 0 22 chr12 29705403 29705722 -114576767 + AluSx SINE Alu 1 312 0 5589 195 29 36 chr12 29705727 29706941 -114575548 + MER57A-int LTR ERV1 5939 7143 -394 731 139 25 0 chr12 29706942 29707064 -114575425 + LTR54B LTR ERV1 1 125 -373 794 238 55 25 chr12 29707078 29707313 -114575176 + MER57A-int LTR ERV1 7274 7515 -22 2022 187 20 18 chr12 29707323 29707718 -114574771 + MER57A LTR ERV1 8 403 0 872 254 86 5 chr12 29707966 29708186 -114574303 - MIR SINE MIR -22 240 3 297 0 0 0 chr12 29708308 29708341 -114574148 + (CA)n Simple_repeat Simple_repeat 2 34 0 2056 139 0 7 chr12 29709028 29709331 -114573158 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr12 29710547 29710573 -114571916 + AT_rich Low_complexity Low_complexity 1 26 0 228 377 9 9 chr12 29711462 29711568 -114570921 + MIR SINE MIR 41 146 -116 23 0 0 0 chr12 29712017 29712040 -114570449 + AT_rich Low_complexity Low_complexity 1 23 0 2281 105 3 0 chr12 29712879 29713175 -114569314 + AluSx SINE Alu 1 297 -15 390 178 50 40 chr12 29713644 29713745 -114568744 - L1MC4 LINE L1 0 8042 7941 365 338 73 28 chr12 29714191 29714478 -114568011 + L2 LINE L2 3014 3313 0 386 329 155 44 chr12 29714882 29715198 -114567291 + L2 LINE L2 2521 2871 -443 927 272 46 37 chr12 29715274 29715488 -114567001 - L1M4 LINE L1 -1756 4390 4170 7595 126 48 3 chr12 29715488 29716684 -114565805 + HSMAR2 DNA Mariner 3 1257 -45 198 103 0 0 chr12 29716684 29716713 -114565776 + (TA)n Simple_repeat Simple_repeat 1 29 0 7595 126 48 3 chr12 29716713 29716759 -114565730 + HSMAR2 DNA Mariner 1257 1300 -2 927 272 46 37 chr12 29716759 29716893 -114565596 - L1M4 LINE L1 -1976 4170 4039 387 176 0 0 chr12 29716938 29717012 -114565477 - MLT1E LTR MaLR 0 593 520 399 233 0 0 chr12 29717012 29717121 -114565368 - L1MEc LINE L1 -3431 2784 2676 1033 261 49 10 chr12 29717131 29717408 -114565081 + MLT1E LTR MaLR 275 533 -60 569 235 23 60 chr12 29717411 29717628 -114564861 - L1MEc LINE L1 -3801 2414 2206 384 287 78 30 chr12 29717636 29717803 -114564686 - L1MEc LINE L1 -4198 2198 2024 4423 229 48 20 chr12 29718412 29719635 -114562854 + L1M2 LINE L1 1258 2515 -4334 1352 343 44 19 chr12 29719653 29720221 -114562268 + L1PA16 LINE L1 793 1374 -6200 358 338 8 15 chr12 29720268 29720401 -114562088 + L1PA16 LINE L1 2167 2298 -5276 12692 233 27 16 chr12 29721105 29723879 -114558610 + L1PA16 LINE L1 2204 4947 -2657 1857 156 0 4 chr12 29723879 29724183 -114558306 + AluSg SINE Alu 12 314 0 12692 233 27 16 chr12 29724183 29725200 -114557289 + L1PA16 LINE L1 4947 5952 -1652 2326 114 16 47 chr12 29725200 29725587 -114556902 - THE1C LTR MaLR 0 375 1 12692 233 27 16 chr12 29725587 29727027 -114555462 + L1PA16 LINE L1 5952 7431 -173 8567 203 21 21 chr12 29727006 29728019 -114554470 + L1PBa LINE L1 1809 2820 -4042 * 2114 119 0 0 chr12 29728019 29728312 -114554177 + AluSc SINE Alu 1 293 -16 8567 203 21 21 chr12 29728312 29730153 -114552336 + L1PBa LINE L1 2820 4727 -2135 2566 86 3 3 chr12 29732069 29732417 -114550072 + THE1A LTR MaLR 1 348 -7 240 191 213 106 chr12 29734686 29734827 -114547662 - MER5A DNA MER1_type -24 165 10 * 330 214 130 53 chr12 29734820 29734951 -114547538 + MIR SINE MIR 88 228 -34 27 29 0 0 chr12 29735584 29735618 -114546871 + AT_rich Low_complexity Low_complexity 1 34 0 472 309 48 18 chr12 29736049 29736217 -114546272 + MER5B DNA MER1_type 4 176 -2 318 296 61 35 chr12 29736348 29736463 -114546026 - MIR SINE MIR -142 120 3 207 208 0 19 chr12 29736465 29736518 -114545971 + A-rich Low_complexity Low_complexity 4 55 0 2171 132 0 0 chr12 29736723 29737026 -114545463 + AluSx SINE Alu 3 305 -7 225 154 0 0 chr12 29737668 29737707 -114544782 + A-rich Low_complexity Low_complexity 1 39 0 1871 117 0 29 chr12 29737813 29738087 -114544402 + AluSg SINE Alu 1 266 -44 865 275 90 60 chr12 29738177 29738745 -114543744 + HAL1 LINE L1 1210 1794 -713 218 258 30 30 chr12 29739099 29739165 -114543324 + MER5A DNA MER1_type 7 72 -117 456 215 0 0 chr12 29739175 29739268 -114543221 - L1MC3 LINE L1 -928 6857 6765 1547 174 3 38 chr12 29740680 29740973 -114541516 + AluJo SINE Alu 10 292 -20 1401 278 43 23 chr12 29741334 29741919 -114540570 - L2 LINE L2 -4 3309 2714 21 0 0 0 chr12 29743835 29743856 -114538633 + AT_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chr12 29744003 29744030 -114538459 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 335 244 76 34 chr12 29745477 29745596 -114536893 + MER103 DNA DNA 41 164 -2 816 318 55 21 chr12 29745930 29746064 -114536425 + L3 LINE CR1 607 735 -842 2217 135 28 6 chr12 29746064 29746420 -114536069 + THE1B LTR MaLR 1 364 0 816 318 55 21 chr12 29746420 29746615 -114535874 + L3 LINE CR1 735 947 -630 974 272 20 8 chr12 29747207 29747461 -114535028 - MIR SINE MIR -1 261 5 261 241 0 0 chr12 29748206 29748260 -114534229 + (TG)n Simple_repeat Simple_repeat 1 54 0 323 224 35 0 chr12 29748478 29748563 -114533926 + MIR SINE MIR 164 251 -11 284 339 23 0 chr12 29748844 29748974 -114533515 - L1ME LINE L1 -546 5618 5486 1016 250 107 66 chr12 29748996 29749078 -114533411 - L1ME2 LINE L1 -6 6160 6083 6027 93 12 8 chr12 29749078 29750920 -114531569 - L1PA13 LINE L1 0 6163 4305 1016 250 107 66 chr12 29750920 29751321 -114531168 - L1ME2 LINE L1 -83 6083 5657 233 57 29 0 chr12 29752920 29752955 -114529534 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 1007 251 27 0 chr12 29753721 29753944 -114528545 - MIR SINE MIR -33 229 1 236 363 60 49 chr12 29755013 29755308 -114527181 - L2 LINE L2 -213 3059 2765 2829 145 14 6 chr12 29755925 29756416 -114526073 - L1MB3 LINE L1 -14 6169 5675 560 247 86 6 chr12 29757450 29757612 -114524877 - L1ME3A LINE L1 -21 6149 5975 2172 281 117 29 chr12 29757661 29759196 -114523293 - L1ME2 LINE L1 -1237 4909 3240 27 0 0 0 chr12 29761309 29761336 -114521153 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr12 29761935 29761963 -114520526 + AT_rich Low_complexity Low_complexity 1 28 0 737 321 19 0 chr12 29762298 29762507 -114519982 + MIR SINE MIR 29 241 -21 269 290 328 0 chr12 29762535 29762666 -114519823 - MIR SINE MIR -70 192 19 270 233 22 11 chr12 29762785 29762875 -114519614 + (TA)n Simple_repeat Simple_repeat 2 92 0 330 339 85 16 chr12 29764004 29764252 -114518237 + L2 LINE L2 2168 2432 -882 353 217 27 35 chr12 29764884 29765058 -114517431 + MLT1I LTR MaLR 316 409 0 487 304 81 6 chr12 29765387 29765548 -114516941 + MIR SINE MIR 20 192 -70 23 24 0 24 chr12 29766479 29766498 -114515991 + AT_rich Low_complexity Low_complexity 1 19 -21 1685 54 27 0 chr12 29766498 29766720 -114515769 + L1MA1 LINE L1 6075 6302 0 23 24 0 24 chr12 29766720 29766741 -114515748 + AT_rich Low_complexity Low_complexity 19 40 0 2937 196 27 27 chr12 29769158 29769852 -114512637 + L1MC3 LINE L1 7092 7785 0 216 0 0 0 chr12 29769980 29770004 -114512485 + (TG)n Simple_repeat Simple_repeat 2 25 0 3446 71 16 0 chr12 29770100 29770536 -114511953 - MLT2A1 LTR ERVL 0 444 2 289 325 73 16 chr12 29770684 29770807 -114511682 + MIR3 SINE MIR 25 154 -54 207 0 0 0 chr12 29773129 29773152 -114509337 + (CA)n Simple_repeat Simple_repeat 2 24 0 414 39 0 0 chr12 29773599 29773651 -114508838 + (TG)n Simple_repeat Simple_repeat 1 52 0 183 272 105 35 chr12 29773743 29773857 -114508632 - MIR SINE MIR -102 160 39 227 333 55 0 chr12 29774036 29774126 -114508363 - MIR SINE MIR -71 137 41 189 384 48 14 chr12 29774670 29774816 -114507673 + L2 LINE L2 3161 3311 -2 220 229 49 16 chr12 29775063 29775124 -114507365 - L2 LINE L2 0 3272 3210 180 0 0 0 chr12 29775449 29775469 -114507020 + (TTTTC)n Simple_repeat Simple_repeat 5 24 0 207 0 0 0 chr12 29775472 29775495 -114506994 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2443 38 0 3 chr12 29775497 29775788 -114506701 - AluY SINE Alu -21 290 1 1561 240 57 22 chr12 29775977 29776473 -114506016 + MER39 LTR ERV1 17 707 0 298 329 93 56 chr12 29776726 29776942 -114505547 - L2 LINE L2 -105 3167 2944 21 0 0 0 chr12 29777530 29777551 -114504938 + AT_rich Low_complexity Low_complexity 1 21 0 504 264 66 54 chr12 29778120 29778378 -114504111 + MIR SINE MIR 2 262 0 326 307 53 9 chr12 29778568 29778682 -114503807 - MIR3 SINE MIR -1 207 89 373 300 158 16 chr12 29781572 29781762 -114500727 + MIR SINE MIR 25 241 -21 288 226 93 0 chr12 29783141 29783281 -114499208 + L1ME3A LINE L1 1525 1873 -4734 517 252 64 41 chr12 29783594 29783908 -114498581 + L1ME3A LINE L1 2531 2851 -3575 21 0 0 0 chr12 29783943 29783964 -114498525 + AT_rich Low_complexity Low_complexity 1 21 0 244 248 83 18 chr12 29784663 29784772 -114497717 + L1ME3A LINE L1 2876 2991 -3435 285 226 143 56 chr12 29784889 29785141 -114497348 + L1ME3A LINE L1 4688 4961 -1465 1041 167 56 123 chr12 29785151 29785450 -114497039 + AluJo SINE Alu 44 324 0 2010 252 94 8 chr12 29785524 29786527 -114495962 + L1ME3A LINE L1 5104 6192 -257 204 152 45 0 chr12 29786536 29786602 -114495887 + (TA)n Simple_repeat Simple_repeat 2 70 0 419 298 83 30 chr12 29786864 29787032 -114495457 + MIR SINE MIR 30 206 -56 2020 126 0 26 chr12 29787104 29787413 -114495076 + AluSg SINE Alu 1 301 -9 334 276 112 47 chr12 29787473 29787643 -114494846 - MIR SINE MIR -6 256 76 232 355 18 9 chr12 29789363 29789473 -114493016 - L3b LINE CR1 -362 1221 1111 472 319 107 9 chr12 29789986 29790202 -114492287 + MIR SINE MIR 8 244 -18 342 130 19 0 chr12 29790904 29790958 -114491531 - AluJb SINE Alu -161 141 87 1962 136 11 0 chr12 29791268 29791554 -114490935 + AluJb SINE Alu 1 289 -23 190 398 17 23 chr12 29791927 29792103 -114490386 + L2 LINE L2 2884 3058 -214 188 238 63 16 chr12 29793476 29793539 -114488950 - L3 LINE CR1 -7 1570 1505 181 328 187 45 chr12 29794204 29794338 -114488151 + MIR3 SINE MIR 33 185 -23 1781 139 0 45 chr12 29795394 29795682 -114486807 + AluSx SINE Alu 1 275 -37 246 62 0 0 chr12 29796291 29796323 -114486166 + (CA)n Simple_repeat Simple_repeat 1 32 0 449 240 19 29 chr12 29796353 29796457 -114486032 + MER5A DNA MER1_type 10 112 -77 25 31 0 0 chr12 29796850 29796882 -114485607 + AT_rich Low_complexity Low_complexity 1 32 0 555 292 119 26 chr12 29797797 29798023 -114484466 + MIR SINE MIR 16 262 0 228 122 0 0 chr12 29805178 29805219 -114477270 + (TAAAAA)n Simple_repeat Simple_repeat 5 45 0 843 235 135 43 chr12 29805831 29805938 -114476551 + MLT1G LTR MaLR 2 98 -469 2284 67 7 11 chr12 29805938 29806222 -114476267 + AluSc SINE Alu 14 296 -13 843 235 135 43 chr12 29806222 29806577 -114475912 + MLT1G LTR MaLR 98 454 -113 1507 86 9 0 chr12 29806587 29806809 -114475680 - L1PA8 LINE L1 -223 5931 5708 1338 108 38 58 chr12 29806809 29807037 -114475452 + L1PA8 LINE L1 5932 6166 -6 427 165 66 0 chr12 29807069 29807160 -114475329 + MLT1G LTR MaLR 447 543 -12 286 22 65 0 chr12 29807497 29807543 -114474946 + T-rich Low_complexity Low_complexity 3 51 0 622 216 216 0 chr12 29808430 29808467 -114474022 - MER3 DNA MER1_type -5 204 176 204 67 0 0 chr12 29808467 29808497 -114473992 + (TTAAA)n Simple_repeat Simple_repeat 1 30 0 622 216 216 0 chr12 29808497 29808626 -114473863 - MER3 DNA MER1_type -33 176 2 784 337 116 0 chr12 29809346 29809744 -114472745 + L3 LINE CR1 1128 1571 -6 2319 145 30 35 chr12 29811127 29811561 -114470928 + MSTB1 LTR MaLR 1 432 0 948 260 63 32 chr12 29811781 29812192 -114470297 + L1ME1 LINE L1 54 477 -5919 1881 196 44 5 chr12 29812198 29812632 -114469857 + L1MC2 LINE L1 5881 6331 -13 482 228 80 25 chr12 29812639 29812876 -114469613 + L1ME1 LINE L1 816 1065 -5331 255 189 113 44 chr12 29812948 29813107 -114469382 + L1ME1 LINE L1 3134 3303 -2912 1633 176 113 36 chr12 29813110 29813501 -114468988 + MLT2B1 LTR ERVL 1 421 -99 326 194 151 43 chr12 29813490 29813583 -114468906 - MLT1B LTR MaLR -287 103 1 * 911 236 38 124 chr12 29813784 29814211 -114468278 - MLT1B LTR MaLR 0 390 1 4090 223 71 53 chr12 29814212 29815511 -114466978 - MLT1B-int LTR MaLR -1 1370 49 1528 168 75 40 chr12 29815540 29815741 -114466748 - MLT1B LTR MaLR -2 388 195 189 0 0 0 chr12 29815741 29815762 -114466727 + (GA)n Simple_repeat Simple_repeat 2 22 0 1528 168 75 40 chr12 29815762 29815799 -114466690 - MLT1B LTR MaLR -195 195 161 2039 134 17 3 chr12 29815799 29816090 -114466399 + AluSx SINE Alu 1 295 -17 1528 168 75 40 chr12 29816090 29816225 -114466264 - MLT1B LTR MaLR -229 161 1 333 283 28 0 chr12 29816225 29816370 -114466119 + L1ME1 LINE L1 3333 3481 -2734 1601 246 132 7 chr12 29816398 29817082 -114465407 + L1ME1 LINE L1 4301 5069 -1146 539 253 14 92 chr12 29817258 29817551 -114464938 + MER93b LTR ERV1 104 373 0 1886 229 55 29 chr12 29817554 29817732 -114464757 + L1ME1 LINE L1 5077 5249 -986 797 146 119 26 chr12 29817732 29817883 -114464606 + FRAM SINE Alu 1 165 -1 1886 229 55 29 chr12 29817883 29818258 -114464231 + L1ME1 LINE L1 5249 5658 -577 1487 162 71 34 chr12 29818258 29818554 -114463935 - AluJb SINE Alu -1 311 5 1886 229 55 29 chr12 29818554 29818861 -114463628 + L1ME1 LINE L1 5658 5956 -279 411 248 78 9 chr12 29818867 29819036 -114463453 + L1MA10 LINE L1 5984 6324 -4 2115 74 50 20 chr12 29819257 29819556 -114462933 - AluSx SINE Alu -4 308 1 460 247 115 17 chr12 29820026 29820200 -114462289 + L1ME3 LINE L1 5821 6011 -151 186 43 0 0 chr12 29820229 29820252 -114462237 + (TG)n Simple_repeat Simple_repeat 2 24 0 1045 219 65 41 chr12 29820294 29820710 -114461779 - L1MC5 LINE L1 -400 7561 7136 271 240 260 0 chr12 29820798 29820894 -114461595 - L2 LINE L2 -691 2623 2503 205 121 30 0 chr12 29820875 29820908 -114461581 - MIR SINE MIR -3 259 226 * 22 0 0 0 chr12 29820918 29820940 -114461549 + AT_rich Low_complexity Low_complexity 1 22 0 239 271 0 52 chr12 29820940 29821036 -114461453 - MIR SINE MIR -21 241 151 2285 242 69 14 chr12 29821056 29821276 -114461213 + MER76 LTR ERV 1 207 -481 2333 165 21 0 chr12 29821276 29821658 -114460831 - MSTD LTR MaLR -2 394 5 2285 242 69 14 chr12 29821658 29822073 -114460416 + MER76 LTR ERV 207 671 -17 226 217 0 0 chr12 29822179 29822225 -114460264 + GA-rich Low_complexity Low_complexity 1 46 0 6295 19 4 0 chr12 29822432 29823162 -114459327 - L1PA2 LINE L1 -2 6153 5421 3797 23 0 4 chr12 29823162 29823690 -114458799 + L1PA2 LINE L1 4918 5443 -712 294 296 106 28 chr12 29824809 29824951 -114457538 + L2 LINE L2 3161 3313 0 856 199 37 0 chr12 29826452 29826613 -114455876 + FRAM SINE Alu 1 167 -9 2550 233 59 24 chr12 29826775 29827617 -114454872 + L1MC4 LINE L1 7170 8041 -1 603 27 0 0 chr12 29827742 29827815 -114454674 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 1735 136 59 67 chr12 29828047 29828263 -114454226 + L1MA9 LINE L1 5926 6142 -170 2246 118 0 3 chr12 29828263 29828567 -114453922 + AluSg SINE Alu 1 303 -7 1735 136 59 67 chr12 29828567 29828672 -114453817 + L1MA9 LINE L1 6142 6246 -66 276 30 0 0 chr12 29828672 29828705 -114453784 + (TG)n Simple_repeat Simple_repeat 2 34 0 186 43 0 0 chr12 29828704 29828727 -114453762 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 1735 136 59 67 chr12 29828705 29828794 -114453695 + L1MA9 LINE L1 6246 6312 0 26 30 0 0 chr12 29830310 29830343 -114452146 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr12 29830383 29830407 -114452082 + AT_rich Low_complexity Low_complexity 1 24 0 563 338 71 30 chr12 29830463 29830729 -114451760 + L2 LINE L2 3032 3308 -5 237 333 34 8 chr12 29830878 29830995 -114451494 - MLT1K LTR MaLR -342 246 127 1057 308 45 26 chr12 29831286 29831712 -114450777 - L2 LINE L2 -1 3312 2879 291 54 0 0 chr12 29832373 29832410 -114450079 + (TA)n Simple_repeat Simple_repeat 2 38 0 219 286 110 0 chr12 29833365 29833456 -114449033 + MIR3 SINE MIR 105 205 -3 287 349 72 48 chr12 29833983 29834232 -114448257 + L2 LINE L2 565 819 -2495 575 329 147 52 chr12 29834500 29834835 -114447654 + L2 LINE L2 2265 2567 -705 2090 125 3 0 chr12 29834835 29835131 -114447358 - AluSp SINE Alu -16 297 1 575 329 147 52 chr12 29835131 29835726 -114446763 + L2 LINE L2 2567 3272 0 822 286 48 0 chr12 29835866 29836093 -114446396 - MIR SINE MIR 0 262 25 183 129 0 0 chr12 29836337 29836368 -114446121 + (CA)n Simple_repeat Simple_repeat 2 32 0 529 280 28 0 chr12 29836697 29836840 -114445649 + MIR SINE MIR 57 203 -59 182 338 68 40 chr12 29837165 29837268 -114445221 + L2 LINE L2 2245 2356 -958 2027 135 0 0 chr12 29837268 29837585 -114444904 + AluSx SINE Alu 1 317 0 182 338 68 40 chr12 29837585 29837628 -114444861 + L2 LINE L2 2356 2396 -918 184 329 141 11 chr12 29837746 29837931 -114444558 + L2 LINE L2 2736 2955 -358 228 325 114 9 chr12 29838448 29838562 -114443927 - L2 LINE L2 0 3272 3147 597 325 88 8 chr12 29839538 29839778 -114442711 + MIR SINE MIR 4 262 0 25 31 0 0 chr12 29840039 29840071 -114442418 + AT_rich Low_complexity Low_complexity 1 32 0 33 43 0 0 chr12 29840136 29840183 -114442306 + AT_rich Low_complexity Low_complexity 1 47 0 234 320 147 0 chr12 29840197 29840272 -114442217 - L2 LINE L2 -91 3181 3096 317 375 43 22 chr12 29840324 29840601 -114441888 - LTR16C LTR ERVL -51 440 158 275 316 9 18 chr12 29841153 29841267 -114441222 - HERVL LTR ERVL -502 5152 5040 908 376 21 11 chr12 29841357 29841976 -114440513 - HERVL LTR ERVL -812 4952 4328 404 335 46 10 chr12 29842520 29842717 -114439772 - HERVL LTR ERVL -1851 3803 3600 332 288 35 47 chr12 29843080 29843250 -114439239 - MER21-int LTR ERV1 -396 3795 3628 2451 84 0 6 chr12 29843512 29843823 -114438666 - AluSc SINE Alu 0 309 1 366 245 0 0 chr12 29844057 29844155 -114438334 + (CAAA)n Simple_repeat Simple_repeat 3 100 0 873 270 9 22 chr12 29844778 29845004 -114437485 - MER58A DNA MER1_type -1 223 1 373 297 105 93 chr12 29845225 29845633 -114436856 - LTR16C LTR ERVL 0 491 79 804 198 6 12 chr12 29846321 29846502 -114435987 + FRAM SINE Alu 1 176 0 29 0 0 0 chr12 29846564 29846593 -114435896 + AT_rich Low_complexity Low_complexity 1 29 0 1719 172 26 13 chr12 29847963 29848271 -114434218 + AluJb SINE Alu 1 312 0 301 120 0 0 chr12 29849869 29849919 -114432570 + L1PA16 LINE L1 6117 6166 0 317 228 55 74 chr12 29850273 29850428 -114432061 + MLT1L LTR MaLR 32 287 -305 2791 204 33 23 chr12 29850452 29850843 -114431646 + L1 LINE L1 4018 4421 -1725 2661 151 35 116 chr12 29850843 29851498 -114430991 - MER7C DNA MER2_type 0 602 1 2791 204 33 23 chr12 29851498 29851799 -114430690 + L1 LINE L1 4421 4717 -1429 2703 250 65 17 chr12 29851832 29852781 -114429708 + L1ME1 LINE L1 3887 4881 -1265 413 281 168 0 chr12 29852793 29852989 -114429500 + L1ME1 LINE L1 5035 5263 -883 8267 160 34 14 chr12 29852990 29854137 -114428352 + L1MA4 LINE L1 3712 4835 -1465 2365 149 16 0 chr12 29854137 29854506 -114427983 - THE1C LTR MaLR 0 375 1 8267 160 34 14 chr12 29854506 29855893 -114426596 + L1MA4 LINE L1 4835 6289 -11 471 276 193 4 chr12 29855906 29856181 -114426308 + L1ME1 LINE L1 5257 5583 -583 5100 167 30 25 chr12 29856198 29857163 -114425326 - L1MA7 LINE L1 0 6291 5315 2238 73 13 3 chr12 29857163 29857463 -114425026 - AluSc SINE Alu -6 303 1 5100 167 30 25 chr12 29857463 29857942 -114424547 - L1MA7 LINE L1 -976 5315 4840 556 309 50 23 chr12 29857942 29858201 -114424288 - L1M3d LINE L1 -5621 270 5 1857 258 42 23 chr12 29858210 29858779 -114423710 + L1ME1 LINE L1 5583 6162 -4 703 283 52 20 chr12 29858771 29859175 -114423314 + L1ME2 LINE L1 5000 5420 -743 * 890 228 126 33 chr12 29859157 29859594 -114422895 + L1ME2 LINE L1 5644 6158 -6 279 398 16 8 chr12 29859662 29859790 -114422699 + L2 LINE L2 3182 3310 -3 417 298 53 18 chr12 29862637 29862808 -114419681 + MIR SINE MIR 66 242 -20 1796 148 7 40 chr12 29864205 29864509 -114417980 + AluSx SINE Alu 1 294 -18 288 317 10 0 chr12 29864696 29864800 -114417689 - MER94 DNA DNA -29 105 1 5652 193 38 7 chr12 29866417 29867335 -114415154 - L1MC1 LINE L1 -45 6288 5400 2126 98 44 0 chr12 29867335 29867631 -114414858 - AluSc SINE Alu 0 309 1 5652 193 38 7 chr12 29867631 29868196 -114414293 - L1MC1 LINE L1 -933 5400 4734 1348 225 39 11 chr12 29868196 29868551 -114413938 - MLT1A1 LTR MaLR 0 365 1 5652 193 38 7 chr12 29868551 29868958 -114413531 - L1MC1 LINE L1 -1599 4734 4341 185 359 0 0 chr12 29869983 29870047 -114412442 - MIR3 SINE MIR -24 184 121 340 291 14 54 chr12 29870720 29870868 -114411621 + LTR16C LTR ERVL 300 441 -50 287 347 47 13 chr12 29870881 29871031 -114411458 + ERVL LTR ERVL 5170 5324 -440 563 320 52 34 chr12 29871329 29871598 -114410891 + LTR33 LTR ERVL 1 274 -247 213 283 0 0 chr12 29871779 29871832 -114410657 + (CA)n Simple_repeat Simple_repeat 2 54 0 478 286 17 79 chr12 29872941 29873182 -114409307 + LTR67 LTR ERVL 274 499 -58 228 35 0 0 chr12 29873360 29873389 -114409100 + (TG)n Simple_repeat Simple_repeat 2 30 0 440 324 101 31 chr12 29873470 29874014 -114408475 - L1ME3A LINE L1 -280 5890 5269 1404 195 9 124 chr12 29874795 29875262 -114407227 - MLT2D LTR ERVL 0 414 2 720 212 13 13 chr12 29875661 29875812 -114406677 + MER97b DNA MER1_type? 35 185 -868 1499 219 104 39 chr12 29877876 29878364 -114404125 + MLT2B1 LTR ERVL 1 520 0 348 178 27 0 chr12 29878755 29878828 -114403661 - L1ME2 LINE L1 -2 6162 6088 324 261 81 9 chr12 29878985 29879096 -114403393 + MLT1J2 LTR MaLR 332 450 0 398 89 0 0 chr12 29879654 29879710 -114402779 - MADE1 DNA Mariner 0 80 25 2382 84 3 0 chr12 29879749 29880059 -114402430 + AluSp SINE Alu 1 311 -2 405 310 19 60 chr12 29880152 29880368 -114402121 - L2 LINE L2 -815 2499 2293 243 0 0 0 chr12 29880810 29880837 -114401652 + (TG)n Simple_repeat Simple_repeat 1 27 0 245 29 29 0 chr12 29880837 29880871 -114401618 + (GA)n Simple_repeat Simple_repeat 2 36 0 324 70 0 0 chr12 29881015 29881058 -114401431 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2037 127 0 7 chr12 29881114 29881523 -114400966 + AluSx SINE Alu 1 407 0 326 311 99 56 chr12 29881854 29882227 -114400262 + MLT1K LTR MaLR 196 584 -4 185 333 0 0 chr12 29882265 29882331 -114400158 - MIR SINE MIR -13 249 184 3366 84 4 13 chr12 29882331 29882806 -114399683 + L1PA7 LINE L1 5683 6153 -1 423 39 0 0 chr12 29882906 29882981 -114399508 + L1PA8 LINE L1 6103 6177 0 345 333 33 7 chr12 29882981 29883134 -114399355 - MIR SINE MIR -83 179 23 3049 263 40 21 chr12 29883485 29885302 -114397187 + L1ME1 LINE L1 4199 6049 -117 1485 228 71 32 chr12 29885315 29885750 -114396739 + Charlie6 DNA MER1_type 1172 1623 -1877 5574 146 8 30 chr12 29885751 29886174 -114396315 + L1PA16 LINE L1 4914 5345 -821 2832 94 14 35 chr12 29886174 29886608 -114395881 + L1PA11 LINE L1 5750 6174 0 5574 146 8 30 chr12 29886608 29887076 -114395413 + L1PA16 LINE L1 5345 5783 -383 396 0 0 0 chr12 29887076 29887120 -114395369 + (TG)n Simple_repeat Simple_repeat 2 45 0 5574 146 8 30 chr12 29887120 29887475 -114395014 + L1PA16 LINE L1 5783 6144 -22 3246 198 94 18 chr12 29887475 29888253 -114394236 + Charlie6 DNA MER1_type 1608 2444 -1056 1791 182 3 3 chr12 29888426 29888722 -114393767 - AluJo SINE Alu -16 296 1 1044 176 58 0 chr12 29889861 29890066 -114392423 + L1MB4 LINE L1 5622 5838 -345 * 5693 180 10 7 chr12 29890063 29891179 -114391310 + L1MC1 LINE L1 5184 6306 -27 1276 173 25 0 chr12 29891356 29891593 -114390896 + L1MB4 LINE L1 5820 6062 -118 511 321 32 74 chr12 29891590 29891995 -114390494 + L1MA9 LINE L1 643 1030 -5749 * 2254 290 76 13 chr12 29893179 29894279 -114388210 + L1MA9 LINE L1 1510 2679 -4170 5119 202 12 44 chr12 29894291 29896049 -114386440 + L1MA9 LINE L1 3760 5572 -1276 2023 127 4 0 chr12 29896049 29896325 -114386164 + AluSp SINE Alu 1 277 -36 1305 69 0 0 chr12 29896325 29896498 -114385991 + (GAAA)n Simple_repeat Simple_repeat 1 173 0 5119 202 12 44 chr12 29896498 29896878 -114385611 + L1MA9 LINE L1 5570 6008 -840 2192 160 30 38 chr12 29896875 29897442 -114385047 + L1MA9 LINE L1 6379 7004 -10 * 587 157 25 0 chr12 29897450 29897571 -114384918 + L1MB3 LINE L1 6053 6176 -7 23210 86 8 11 chr12 29897800 29903737 -114378752 + L1PA6 LINE L1 11 6147 -7 36 40 0 0 chr12 29903863 29903913 -114378576 + AT_rich Low_complexity Low_complexity 1 50 0 734 257 125 30 chr12 29904032 29904335 -114378154 + MER74A LTR ERVL 225 556 -2 2066 62 0 8 chr12 29904428 29904715 -114377774 + AluY SINE Alu 29 313 0 238 276 0 0 chr12 29904927 29904985 -114377504 + MER44D DNA MER2_type 2 59 -646 1006 238 99 60 chr12 29904988 29905420 -114377069 + MSTB2 LTR MaLR 1 449 -8 2133 188 12 2 chr12 29905424 29905838 -114376651 + MER44D DNA MER2_type 56 528 -77 666 311 70 4 chr12 29905884 29906112 -114376377 - MIR SINE MIR -7 255 13 5243 167 30 3 chr12 29906528 29907670 -114374819 - L1MC2 LINE L1 -151 6193 5024 27 73 0 0 chr12 29908142 29908197 -114374292 + AT_rich Low_complexity Low_complexity 1 55 0 483 272 105 40 chr12 29908747 29908975 -114373514 - MIR SINE MIR -1 261 19 303 382 62 24 chr12 29909056 29909394 -114373095 + L2 LINE L2 2626 2976 -338 210 128 0 0 chr12 29911080 29911119 -114371370 + (CA)n Simple_repeat Simple_repeat 2 40 0 541 237 23 8 chr12 29911218 29911349 -114371140 + MIR SINE MIR 129 261 -1 2158 126 3 0 chr12 29911349 29911642 -114370847 + AluSx SINE Alu 1 294 -18 301 271 98 23 chr12 29912715 29912848 -114369641 + L1ME4a LINE L1 5977 6119 -2 333 88 44 22 chr12 29913029 29913120 -114369369 + (TA)n Simple_repeat Simple_repeat 1 93 0 6901 58 0 3 chr12 29913127 29914139 -114368350 - L1PA6 LINE L1 -18 6136 5122 10999 199 112 11 chr12 29914139 29918789 -114363700 - L1 LINE L1 -1725 5123 1 645 217 129 41 chr12 29918815 29919156 -114363333 - MER96B DNA MER1_type? -21 396 26 212 308 94 44 chr12 29919194 29919353 -114363136 - L2 LINE L2 -340 2974 2808 2224 67 43 10 chr12 29919581 29919881 -114362608 + AluY SINE Alu 1 310 -1 2759 97 335 4 chr12 29920161 29920677 -114361812 - LTR12 LTR ERV1 -1 687 1 467 248 36 51 chr12 29921453 29921504 -114360985 + MIR SINE MIR 107 157 -105 4374 75 68 21 chr12 29921504 29922132 -114360357 - PABL_A LTR ERV1 -2 658 1 467 248 36 51 chr12 29922132 29922217 -114360272 + MIR SINE MIR 157 241 -21 1767 136 38 95 chr12 29922617 29922986 -114359503 + MER7A DNA MER2_type 1 346 0 233 336 22 22 chr12 29923180 29923317 -114359172 - MIR SINE MIR -17 245 109 2167 116 52 17 chr12 29924347 29924709 -114357780 + THE1C LTR MaLR 1 375 0 289 270 154 87 chr12 29924987 29925343 -114357146 + L2 LINE L2 2934 3313 0 524 84 0 36 chr12 29926209 29926292 -114356197 + MADE1 DNA Mariner 1 80 0 1599 186 7 14 chr12 29926405 29926695 -114355794 + AluJo SINE Alu 9 296 -16 2436 236 64 50 chr12 29926943 29927690 -114354799 + Zaphod DNA AcHobo 11 777 -3254 1667 178 0 20 chr12 29927690 29927988 -114354501 + AluJo SINE Alu 1 292 -20 2436 236 64 50 chr12 29927988 29928206 -114354283 + Zaphod DNA AcHobo 777 990 -3041 1359 220 11 5 chr12 29928207 29928575 -114353914 + Zaphod DNA AcHobo 3597 3966 -65 494 144 112 32 chr12 29929051 29929176 -114353313 - L1MC1 LINE L1 0 6333 6199 * 10331 216 36 16 chr12 29929171 29930486 -114352003 - L1MC1 LINE L1 -41 6572 5285 261 0 0 0 chr12 29930486 29930515 -114351974 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 10331 216 36 16 chr12 29930515 29932736 -114349753 - L1MC1 LINE L1 -1328 5285 2937 2642 32 3 0 chr12 29932736 29933044 -114349445 + AluY SINE Alu 1 309 -2 10331 216 36 16 chr12 29933044 29933748 -114348741 - L1MC1 LINE L1 -3676 2937 2249 320 206 27 14 chr12 29933760 29933833 -114348656 + MER21B LTR ERV1 13 86 -777 334 268 0 0 chr12 29933936 29934007 -114348482 + MER21B LTR ERV1 19 89 -774 2414 222 88 38 chr12 29934012 29934741 -114347748 + MER21B LTR ERV1 45 809 -54 2704 146 51 11 chr12 29934795 29935324 -114347165 - L1MC1 LINE L1 -4186 2240 1691 1664 179 77 19 chr12 29935334 29935698 -114346791 - L1MC1 LINE L1 -5989 437 53 30 0 0 0 chr12 29935703 29935733 -114346756 + AT_rich Low_complexity Low_complexity 1 30 0 2374 43 0 4 chr12 29935925 29936203 -114346286 - AluY SINE Alu -7 304 28 1333 221 119 70 chr12 29936798 29937417 -114345072 + MLT1E1 LTR MaLR 1 650 -4 2170 128 0 10 chr12 29937600 29937906 -114344583 + AluSg SINE Alu 1 303 -7 2210 101 10 3 chr12 29938169 29938476 -114344013 - AluSx SINE Alu -3 309 1 1806 140 71 3 chr12 29938851 29939250 -114343239 - MER61D LTR ERV1 0 501 1 3204 147 11 20 chr12 29939251 29940034 -114342455 - MER61D-int LTR ERV1 -1 6995 3500 3087 57 23 18 chr12 29940038 29940475 -114342014 - LTR7 LTR ERV1 -11 439 1 2417 101 52 21 chr12 29940475 29940899 -114341590 - HERVH LTR ERV1 0 7713 7277 4156 127 0 21 chr12 29940916 29941054 -114341435 - HERVH LTR ERV1 -2564 5149 5010 2296 92 3 0 chr12 29941054 29941349 -114341140 - AluY SINE Alu -15 296 1 4156 127 0 21 chr12 29941349 29941885 -114340604 - HERVH LTR ERV1 -2703 5010 4489 5656 92 6 2 chr12 29941888 29942739 -114339750 - HERVH LTR ERV1 -3720 3993 3140 * 14952 109 23 41 chr12 29942733 29945770 -114336719 - HERVH LTR ERV1 -4726 2987 1 3234 72 23 20 chr12 29945778 29946220 -114336269 - LTR7 LTR ERV1 -7 443 1 11589 168 29 43 chr12 29946220 29946395 -114336094 - MER61D-int LTR ERV1 -303 4914 4738 2428 90 0 0 chr12 29946395 29946696 -114335793 + AluY SINE Alu 1 301 -10 11589 168 29 43 chr12 29946696 29950559 -114331930 - MER61D-int LTR ERV1 -479 4738 609 746 174 147 94 chr12 29950565 29950863 -114331626 - MER61D-int LTR ERV1 -4819 398 290 819 267 86 24 chr12 29950958 29951470 -114331019 - MER61D-int LTR ERV1 -2546 601 68 2007 138 82 7 chr12 29951531 29951946 -114330543 - MER61D LTR ERV1 0 501 1 1011 239 68 66 chr12 29951946 29952383 -114330106 - MLT1C LTR MaLR -29 438 1 2271 173 71 33 chr12 29952404 29952854 -114329635 + MLT1C LTR MaLR 1 467 0 279 303 38 60 chr12 29952956 29953223 -114329266 - L1ME LINE L1 -383 5738 5478 180 0 0 0 chr12 29954348 29954368 -114328121 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 24 32 0 0 chr12 29954483 29954514 -114327975 + GC_rich Low_complexity Low_complexity 1 31 0 764 195 75 25 chr12 29956873 29957032 -114325457 + MER45A DNA AcHobo 1 167 -11 277 355 32 11 chr12 29957136 29957229 -114325260 + MIR SINE MIR 66 160 -102 540 328 114 39 chr12 29958467 29959259 -114323230 - L2 LINE L2 -1 3312 2453 2193 69 33 0 chr12 29959821 29960143 -114322346 - AluY SINE Alu 0 331 1 1092 197 90 72 chr12 29960918 29961253 -114321236 + MER58B DNA MER1_type 1 341 0 1190 140 43 100 chr12 29961385 29961685 -114320804 + L1MA7 LINE L1 5887 6169 -122 30 0 0 0 chr12 29961726 29961756 -114320733 + AT_rich Low_complexity Low_complexity 1 30 0 324 180 56 67 chr12 29962116 29962205 -114320284 + MER5A DNA MER1_type 39 126 -63 366 23 0 0 chr12 29962525 29962568 -114319921 + (TA)n Simple_repeat Simple_repeat 1 43 0 299 345 101 0 chr12 29964226 29964345 -114318144 - MIR3 SINE MIR -48 160 30 343 223 78 58 chr12 29964366 29964469 -114318020 - L2 LINE L2 0 3272 3168 2072 100 65 0 chr12 29964675 29964954 -114317535 + AluY SINE Alu 1 297 -14 222 313 15 0 chr12 29965715 29965782 -114316707 + L2 LINE L2 2694 2761 -553 1812 157 66 76 chr12 29965976 29966370 -114316119 - MLT1B LTR MaLR 0 390 1 2538 246 75 33 chr12 29966540 29967726 -114314763 - L1ME3A LINE L1 0 6170 4923 464 355 91 54 chr12 29968294 29968590 -114313899 - L2 LINE L2 -3 3269 2963 478 186 31 0 chr12 29968607 29968704 -114313785 + MIR SINE MIR 75 174 -88 239 224 0 0 chr12 29968949 29968998 -114313491 + MIR3 SINE MIR 153 201 -7 464 295 107 45 chr12 29969266 29969374 -114313115 + MIR SINE MIR 25 125 -137 440 160 40 0 chr12 29969374 29969449 -114313040 - MER116 DNA Mariner -2 78 1 464 295 107 45 chr12 29969449 29969564 -114312925 + MIR SINE MIR 125 262 0 289 263 31 31 chr12 29970403 29970563 -114311926 - L1M4 LINE L1 -909 5237 5078 371 284 77 26 chr12 29971416 29971571 -114310918 + MIR SINE MIR 53 215 -47 199 331 98 84 chr12 29971919 29972529 -114309960 + L2 LINE L2 571 1189 -2125 4420 78 283 0 chr12 29973940 29974584 -114307905 - LTR12 LTR ERV1 0 826 1 5691 109 6 1 chr12 29974584 29975376 -114307113 - HERV9 LTR ERV1 0 8399 7604 2426 148 102 111 chr12 29975355 29976264 -114306225 - HERV9 LTR ERV1 -5156 1740 840 * 1431 95 0 0 chr12 29976265 29976454 -114306035 - HERV9 LTR ERV1 -3455 4944 4756 * 2302 122 108 0 chr12 29976453 29976806 -114305683 - HERV9 LTR ERV1 -5427 2972 2582 1787 175 56 38 chr12 29976814 29977679 -114304810 + SVA Other Other 432 868 -518 10868 108 9 24 chr12 29977815 29979843 -114302646 - HERV9 LTR ERV1 -5803 2596 533 2245 92 54 0 chr12 29979843 29980138 -114302351 - AluY SINE Alu 0 311 1 10868 108 9 24 chr12 29980138 29980610 -114301879 - HERV9 LTR ERV1 -7866 533 55 1871 111 159 165 chr12 29980585 29981292 -114301197 - LTR12 LTR ERV1 -133 2031 58 * 258 250 0 0 chr12 29981296 29981348 -114301141 - LTR30 LTR ERV1 -670 52 1 183 156 0 0 chr12 29983149 29983181 -114299308 - MIR SINE MIR -101 161 130 1510 167 3 70 chr12 29983734 29984034 -114298455 + AluJb SINE Alu 5 284 -28 2289 160 0 69 chr12 29984240 29984659 -114297830 - MLT1B LTR MaLR 0 390 1 251 310 93 8 chr12 29984812 29984941 -114297548 - MIR SINE MIR -12 250 111 467 17 17 0 chr12 29986140 29986200 -114296289 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 419 358 66 8 chr12 29986905 29987268 -114295221 + L2 LINE L2 1326 1709 -1605 212 86 29 0 chr12 29987346 29987381 -114295108 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 763 160 25 0 chr12 29987509 29987628 -114294861 - LTR12 LTR ERV1 -234 480 359 298 211 14 0 chr12 29987628 29987699 -114294790 - LTR30 LTR ERV1 -98 624 553 1747 76 3 170 chr12 29987700 29988042 -114294447 - LTR12 LTR ERV1 -429 285 1 810 315 129 40 chr12 29988264 29989033 -114293456 + L2 LINE L2 1709 2545 -769 339 168 29 168 chr12 29989400 29989537 -114292952 + L1MB5 LINE L1 6057 6174 0 2426 96 0 6 chr12 29989841 29990155 -114292334 - AluSx SINE Alu 0 312 1 228 288 136 60 chr12 29990155 29990332 -114292157 - L3b LINE CR1 -111 1472 1279 250 301 122 8 chr12 29990338 29990461 -114292028 + MIR SINE MIR 40 176 -86 21 57 0 0 chr12 29990976 29991011 -114291478 + AT_rich Low_complexity Low_complexity 1 35 0 184 322 0 0 chr12 29991047 29991106 -114291383 - MIR3 SINE MIR -6 202 144 396 271 90 14 chr12 29991135 29991279 -114291210 + MER20 DNA MER1_type 31 185 -34 1245 159 94 14 chr12 29991437 29991713 -114290776 - MER33 DNA MER1_type -22 302 5 2512 35 0 0 chr12 29992166 29992506 -114289983 - AluY SINE Alu 0 340 1 21 57 0 0 chr12 29992756 29992791 -114289698 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr12 29992832 29992855 -114289634 + AT_rich Low_complexity Low_complexity 1 23 0 950 192 4 96 chr12 29993181 29993410 -114289079 - MER58A DNA MER1_type -16 208 1 21 0 0 0 chr12 29993598 29993619 -114288870 + AT_rich Low_complexity Low_complexity 1 21 0 4382 196 88 63 chr12 29993897 29994163 -114288326 - L1MC3 LINE L1 -20 7765 7507 233 89 22 0 chr12 29994163 29994208 -114288281 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4382 196 88 63 chr12 29994208 29994480 -114288009 - L1MC3 LINE L1 -278 7507 7243 276 246 0 0 chr12 29994480 29994537 -114287952 - MLT1F1 LTR MaLR -443 124 68 4382 196 88 63 chr12 29994537 29995132 -114287357 - L1MC3 LINE L1 -542 7243 6545 1532 274 23 57 chr12 29995227 29995828 -114286661 - L2 LINE L2 -659 2655 2075 24 0 0 0 chr12 29995862 29995886 -114286603 + AT_rich Low_complexity Low_complexity 1 24 0 2061 108 3 3 chr12 29995886 29996181 -114286308 - AluY SINE Alu -16 295 1 217 283 0 0 chr12 29997830 29997876 -114284613 - L2 LINE L2 -17 3296 3251 21 36 0 0 chr12 29998055 29998083 -114284406 + AT_rich Low_complexity Low_complexity 1 28 0 5588 130 10 2 chr12 29998492 29999393 -114283096 - L1MC1 LINE L1 0 6333 5426 1480 188 82 28 chr12 29999867 29999940 -114282549 - LTR52 LTR ERVL -3 418 350 351 0 0 0 chr12 29999940 29999979 -114282510 + (CA)n Simple_repeat Simple_repeat 1 39 0 1480 188 82 28 chr12 29999979 30000294 -114282195 - LTR52 LTR ERVL -71 350 9 4801 127 31 11 chr12 30001123 30001958 -114280531 - L1PB4 LINE L1 -1 6155 5304 1605 209 19 14 chr12 30001939 30002359 -114280130 + L1PB4 LINE L1 4900 5321 -825 * 549 190 120 25 chr12 30002822 30002980 -114279509 - MIR SINE MIR 0 262 90 27 49 0 0 chr12 30003077 30003118 -114279371 + AT_rich Low_complexity Low_complexity 1 41 0 2096 108 0 7 chr12 30003650 30003945 -114278544 - AluSc SINE Alu -16 293 1 288 359 78 0 chr12 30004346 30004449 -114278040 - L2 LINE L2 -35 3237 3127 227 350 157 43 chr12 30004502 30004736 -114277753 - L2 LINE L2 -397 2917 2711 2556 48 0 3 chr12 30004736 30005047 -114277442 + AluY SINE Alu 1 310 -1 227 350 157 43 chr12 30005047 30005526 -114276963 - L2 LINE L2 -603 2711 2123 520 264 181 0 chr12 30005555 30005699 -114276790 - MER91B DNA MER1_type -2 188 19 257 286 97 26 chr12 30005721 30005875 -114276614 - L2 LINE L2 -1219 2095 1931 3248 107 14 24 chr12 30005955 30006449 -114276040 + LTR22B LTR ERVK 1 489 -3 958 179 70 30 chr12 30007133 30007334 -114275155 - MER3 DNA MER1_type 0 209 1 197 322 28 63 chr12 30007507 30007650 -114274839 - MIR SINE MIR -41 221 84 2359 168 36 2 chr12 30007936 30008347 -114274142 + MSTB LTR MaLR 2 426 0 2572 51 0 3 chr12 30009136 30009447 -114273042 + AluY SINE Alu 1 310 -1 400 333 147 9 chr12 30009655 30009988 -114272501 - L2 LINE L2 -20 3293 2915 2583 120 31 14 chr12 30009994 30010411 -114272078 - MSTA LTR MaLR -4 424 1 200 284 40 27 chr12 30012282 30012356 -114270133 - MER5B DNA MER1_type 0 178 104 186 133 0 0 chr12 30013099 30013129 -114269360 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 631 218 0 8 chr12 30013338 30013462 -114269027 + FLAM_C SINE Alu 1 123 -20 230 368 0 0 chr12 30014409 30014496 -114267993 - L2 LINE L2 -647 2667 2581 300 27 0 0 chr12 30015111 30015148 -114267341 + (TG)n Simple_repeat Simple_repeat 2 38 0 193 303 23 136 chr12 30015163 30015295 -114267194 + MIR3 SINE MIR 6 122 -86 1683 163 14 10 chr12 30015343 30015632 -114266857 + AluJo SINE Alu 1 290 -22 24 53 0 0 chr12 30015632 30015670 -114266819 + AT_rich Low_complexity Low_complexity 1 38 0 1848 118 44 7 chr12 30016103 30016375 -114266114 + AluSg1 SINE Alu 14 295 -14 222 37 0 0 chr12 30016425 30016452 -114266037 + (TG)n Simple_repeat Simple_repeat 1 27 0 1092 155 0 0 chr12 30016564 30016725 -114265764 + AluSg/x SINE Alu 138 298 -14 1264 192 98 31 chr12 30017137 30017473 -114265016 + MLT1C LTR MaLR 1 359 -108 291 125 0 0 chr12 30017459 30017507 -114264982 + Alu SINE Alu 252 299 -3 * 191 345 128 28 chr12 30017701 30018130 -114264359 + L2 LINE L2 1912 2383 -931 309 252 68 29 chr12 30018199 30018302 -114264187 + MIR SINE MIR 5 111 -151 2402 94 0 0 chr12 30018826 30019125 -114263364 + AluSx SINE Alu 1 299 -13 696 326 47 61 chr12 30019756 30019958 -114262531 - L2 LINE L2 0 3313 3110 2135 117 7 7 chr12 30019958 30020285 -114262204 + AluSq SINE Alu 1 313 0 696 326 47 61 chr12 30020285 30020588 -114261901 - L2 LINE L2 -203 3110 2815 27 49 0 0 chr12 30021174 30021215 -114261274 + AT_rich Low_complexity Low_complexity 1 41 0 546 288 53 60 chr12 30023046 30023403 -114259086 + L1MCc LINE L1 1179 1537 -5585 213 39 0 0 chr12 30023403 30023429 -114259060 + (GGA)n Simple_repeat Simple_repeat 2 27 0 546 288 53 60 chr12 30023429 30023493 -114258996 + L1MCc LINE L1 1537 1600 -5522 2294 88 0 10 chr12 30023493 30023789 -114258700 + AluY SINE Alu 1 293 -18 546 288 53 60 chr12 30023789 30024277 -114258212 + L1MCc LINE L1 1600 2304 -4818 1858 151 11 0 chr12 30024300 30024607 -114257882 - AluJb SINE Alu 0 310 1 183 195 322 0 chr12 30024628 30024715 -114257774 + MIR SINE MIR 138 252 -10 343 188 78 0 chr12 30024906 30024970 -114257519 + L2 LINE L2 3203 3271 -42 321 285 192 0 chr12 30025422 30025552 -114256937 - MIR3 SINE MIR -9 199 45 3386 148 41 58 chr12 30026092 30026827 -114255662 - MER50 LTR ERV1 -12 722 1 2249 102 3 7 chr12 30027274 30027567 -114254922 - AluSx SINE Alu -20 292 1 951 174 152 112 chr12 30027733 30028180 -114254309 - MER31B LTR ERV1 0 466 2 501 261 12 118 chr12 30028434 30028679 -114253810 - MIR SINE MIR -13 249 31 1549 192 0 54 chr12 30030355 30030668 -114251821 + AluJb SINE Alu 1 296 -16 554 248 102 6 chr12 30030710 30030867 -114251622 + MIR SINE MIR 91 262 0 463 290 115 37 chr12 30031377 30031594 -114250895 + MIR SINE MIR 29 262 0 1705 56 0 5 chr12 30033347 30033563 -114248926 + L1PA5 LINE L1 5940 6154 0 30 59 0 0 chr12 30033807 30033858 -114248631 + AT_rich Low_complexity Low_complexity 1 51 0 1836 178 0 0 chr12 30034002 30034306 -114248183 - AluSx SINE Alu -8 304 1 569 268 105 86 chr12 30034999 30035361 -114247128 - L2 LINE L2 -1 3312 2944 1136 276 87 83 chr12 30035391 30036326 -114246163 - L2 LINE L2 -43 3270 2310 881 343 107 22 chr12 30036327 30036974 -114245515 - L2 LINE L2 -382 2932 2231 284 328 46 23 chr12 30037008 30037139 -114245350 - L2 LINE L2 -1670 1644 1511 347 314 57 8 chr12 30037187 30037311 -114245178 - L2 LINE L2 -1 3271 3142 1069 358 160 26 chr12 30037899 30038207 -114244282 + L2 LINE L2 335 600 -2672 360 119 0 0 chr12 30038207 30038266 -114244223 + (CA)n Simple_repeat Simple_repeat 2 60 0 1069 358 160 26 chr12 30038266 30040245 -114242244 + L2 LINE L2 600 3055 -217 21 0 0 0 chr12 30040296 30040317 -114242172 + AT_rich Low_complexity Low_complexity 1 21 0 397 211 33 0 chr12 30040420 30040510 -114241979 - MIR SINE MIR 0 262 170 287 217 205 12 chr12 30040526 30040609 -114241880 + L2 LINE L2 3169 3267 -5 1558 138 54 0 chr12 30041316 30041613 -114240876 + L1MA6 LINE L1 5988 6300 0 1777 147 42 66 chr12 30041808 30042189 -114240300 - THE1C LTR MaLR -3 372 1 5768 180 66 28 chr12 30042618 30044019 -114238470 + Charlie1a DNA MER1_type 1 1454 -1 463 138 11 11 chr12 30044241 30044328 -114238161 - MLT1E1 LTR MaLR 0 654 568 783 194 156 84 chr12 30044348 30044668 -114237821 - MLT1E1 LTR MaLR -308 346 4 279 0 0 0 chr12 30044871 30044902 -114237587 + (TG)n Simple_repeat Simple_repeat 2 32 0 2279 122 3 0 chr12 30046220 30046523 -114235966 - AluSx SINE Alu -8 304 1 223 284 12 25 chr12 30046610 30046691 -114235798 + (TATG)n Simple_repeat Simple_repeat 4 83 0 226 299 158 31 chr12 30048211 30048338 -114234151 + MIR SINE MIR 11 153 -109 2634 181 25 11 chr12 30048340 30048888 -114233601 - MER89 LTR ERV1 0 559 4 309 281 0 0 chr12 30049350 30049414 -114233075 + L2 LINE L2 3186 3249 -23 261 0 0 0 chr12 30049421 30049450 -114233039 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2336 82 0 3 chr12 30050404 30050698 -114231791 - AluSc SINE Alu -16 293 1 387 280 32 48 chr12 30050706 30050831 -114231658 - MIR SINE MIR -91 171 49 238 208 19 142 chr12 30050876 30050982 -114231507 + MER5A DNA MER1_type 96 188 -1 196 382 20 10 chr12 30050982 30051079 -114231410 + L2 LINE L2 2571 2668 -646 23 54 0 0 chr12 30051479 30051516 -114230973 + AT_rich Low_complexity Low_complexity 1 37 0 8703 51 2 7 chr12 30053667 30054744 -114227745 - MER11C LTR ERVK 0 1071 1 369 352 7 28 chr12 30055318 30055460 -114227029 + MER5A DNA MER1_type 49 187 -2 188 115 250 0 chr12 30055492 30055544 -114226945 - L2 LINE L2 0 3313 3249 195 352 69 60 chr12 30055750 30055932 -114226557 - MIR SINE MIR -64 144 9 5109 180 21 5 chr12 30056231 30057201 -114225288 + ERVL-D LTR ERVL 1377 2361 -3403 5857 138 42 9 chr12 30057203 30058228 -114224261 + ERVL-D LTR ERVL 4699 5757 -7 1727 198 22 14 chr12 30058228 30058591 -114223898 + MLT2D LTR ERVL 1 366 -48 354 148 22 44 chr12 30058593 30058776 -114223713 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 378 74 0 0 chr12 30058794 30058848 -114223641 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 252 111 56 19 chr12 30058885 30058939 -114223550 + MLT2D LTR ERVL 465 520 0 242 255 39 0 chr12 30059261 30059312 -114223177 + L2 LINE L2 3212 3264 -8 600 236 31 0 chr12 30059790 30059917 -114222572 - FLAM_A SINE Alu -2 131 1 2253 98 7 3 chr12 30060088 30060385 -114222104 + AluSx SINE Alu 1 298 -14 1581 175 40 67 chr12 30060485 30060886 -114221603 - MLT1B LTR MaLR 0 390 1 1278 137 0 0 chr12 30061031 30061214 -114221275 - AluSp SINE Alu -1 312 130 2058 142 0 7 chr12 30061280 30061590 -114220899 - AluSx SINE Alu -4 308 1 1659 165 0 8 chr12 30061614 30061880 -114220609 - AluJo SINE Alu -22 290 27 4427 117 286 97 chr12 30061881 30063304 -114219185 + pTR5 LTR ERV1 745 2436 -2 2193 109 0 35 chr12 30063480 30063792 -114218697 + AluSx SINE Alu 1 301 -11 764 223 13 65 chr12 30064558 30064787 -114217702 + MER20 DNA MER1_type 2 218 -1 299 164 66 0 chr12 30065143 30065204 -114217285 + L2 LINE L2 3232 3296 -17 25 51 0 0 chr12 30065477 30065516 -114216973 + AT_rich Low_complexity Low_complexity 1 39 0 344 115 0 0 chr12 30065591 30065643 -114216846 - MADE1 DNA Mariner -26 54 3 10743 157 119 33 chr12 30065930 30067767 -114214722 + L1MA3 LINE L1 966 2644 -5080 2134 115 3 3 chr12 30067767 30068084 -114214405 + AluSp SINE Alu 1 317 0 10743 157 119 33 chr12 30068084 30069911 -114212578 + L1MA3 LINE L1 2644 4313 -3411 623 171 0 57 chr12 30069911 30070078 -114212411 + FLAM_C SINE Alu 1 160 0 10743 157 119 33 chr12 30070078 30072220 -114210269 + L1MA3 LINE L1 4313 7722 -2 910 239 32 5 chr12 30072712 30072930 -114209559 - MIR SINE MIR -2 260 37 357 237 132 53 chr12 30073264 30073454 -114209035 + L2 LINE L2 3107 3311 -2 8382 65 10 2 chr12 30074120 30075182 -114207307 - MER11C LTR ERVK 0 1071 1 634 350 103 18 chr12 30075294 30075682 -114206807 + L2 LINE L2 2848 3268 -4 738 276 67 28 chr12 30077153 30077405 -114205084 - MIR SINE MIR -2 260 3 7023 159 16 35 chr12 30077525 30078248 -114204241 - L1P3 LINE L1 -4472 1989 1254 186 71 0 0 chr12 30078248 30078276 -114204213 + (TTG)n Simple_repeat Simple_repeat 3 30 0 7023 159 16 35 chr12 30078276 30079466 -114203023 - L1P3 LINE L1 -5207 1254 56 4184 26 18 0 chr12 30079472 30079971 -114202518 - L1PA4 LINE L1 -2 6153 5646 2522 84 119 7 chr12 30079971 30080374 -114202115 + LTR7 LTR ERV1 1 448 -2 645 54 32 0 chr12 30080376 30080469 -114202020 + HERVH LTR ERV1 1 96 -7617 2674 80 120 0 chr12 30080485 30080885 -114201604 - LTR7 LTR ERV1 -2 448 1 1132 0 0 0 chr12 30080885 30081013 -114201476 - L1P1 LINE L1 -505 5650 5523 356 147 0 15 chr12 30081011 30081079 -114201410 - L1P3 LINE L1 -5806 69 3 * 363 123 0 18 chr12 30081361 30081418 -114201071 + MER5A DNA MER1_type 1 56 -133 448 308 34 7 chr12 30081433 30081579 -114200910 + MIR SINE MIR 11 160 -102 22 35 0 0 chr12 30082187 30082216 -114200273 + AT_rich Low_complexity Low_complexity 1 29 0 227 170 38 0 chr12 30082264 30082317 -114200172 + (TA)n Simple_repeat Simple_repeat 2 56 0 436 123 0 0 chr12 30082317 30082382 -114200107 + Alu SINE Alu 236 300 -10 2215 95 0 7 chr12 30082400 30082694 -114199795 - AluSg SINE Alu -18 292 1 337 265 8 98 chr12 30082823 30082955 -114199534 - L2 LINE L2 -13 3259 3140 1838 187 13 0 chr12 30083342 30083647 -114198842 - AluJo SINE Alu -1 311 3 34 72 0 0 chr12 30083647 30083716 -114198773 + AT_rich Low_complexity Low_complexity 1 69 0 1462 190 3 39 chr12 30083761 30084066 -114198423 - AluJo SINE Alu -18 294 1 294 330 10 0 chr12 30085202 30085305 -114197184 + MIR SINE MIR 87 190 -72 2270 108 0 0 chr12 30085347 30085643 -114196846 - AluSx SINE Alu -16 296 1 882 262 99 30 chr12 30085988 30086381 -114196108 - MLT1J1 LTR MaLR -24 422 3 338 296 12 0 chr12 30087190 30087271 -114195218 - L2 LINE L2 0 3272 3191 454 237 105 18 chr12 30088467 30088686 -114193803 + L1ME4a LINE L1 5685 5922 -199 2482 32 0 0 chr12 30090250 30090559 -114191930 - AluY SINE Alu 0 309 1 413 79 0 16 chr12 30090945 30091008 -114191481 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 2163 106 14 0 chr12 30091057 30091339 -114191150 + AluSc SINE Alu 1 286 -23 410 36 18 0 chr12 30091471 30091527 -114190962 + (CA)n Simple_repeat Simple_repeat 2 58 0 212 367 143 23 chr12 30091676 30091809 -114190680 - MIR3 SINE MIR -113 95 2 352 282 19 39 chr12 30092396 30092499 -114189990 - MIR SINE MIR -88 120 20 306 322 40 51 chr12 30092507 30092684 -114189805 + MER5B DNA MER1_type 1 175 -3 6705 124 11 5 chr12 30094350 30095582 -114186907 + L1MA1 LINE L1 4384 5631 -671 2217 144 0 0 chr12 30095582 30095887 -114186602 + AluSx SINE Alu 1 305 -7 6705 124 11 5 chr12 30095887 30096562 -114185927 + L1MA1 LINE L1 5631 6301 -1 412 278 97 23 chr12 30096672 30096848 -114185641 + MER5A DNA MER1_type 1 189 0 460 311 28 28 chr12 30096941 30097118 -114185371 - MER5A DNA MER1_type -6 183 7 1356 152 0 5 chr12 30098381 30098585 -114183904 - AluJb SINE Alu -109 203 1 1167 287 80 39 chr12 30098986 30099736 -114182753 - L1ME4a LINE L1 -54 6067 5287 2339 80 7 7 chr12 30099769 30100068 -114182421 - AluSq SINE Alu -14 299 1 2277 85 3 3 chr12 30100497 30100792 -114181697 - AluSq SINE Alu -18 295 1 232 235 84 50 chr12 30100912 30101031 -114181458 - L1 LINE L1 -1523 4623 4501 2900 3 0 0 chr12 30101175 30101486 -114181003 - AluYb8 SINE Alu -7 311 1 232 332 52 26 chr12 30101561 30101754 -114180735 - L1 LINE L1 -1908 4238 4041 198 286 24 60 chr12 30101989 30102073 -114180416 + L2 LINE L2 2596 2676 -638 571 269 142 10 chr12 30102938 30103135 -114179354 + MIR SINE MIR 4 226 -36 1875 81 101 68 chr12 30103182 30103478 -114179011 + AluSq SINE Alu 1 306 -7 27 49 0 0 chr12 30103788 30103829 -114178660 + AT_rich Low_complexity Low_complexity 1 41 0 2293 115 6 3 chr12 30104350 30104662 -114177827 + AluSq SINE Alu 1 313 0 237 327 128 48 chr12 30105114 30105472 -114177017 + L2 LINE L2 2826 3212 -60 270 0 0 0 chr12 30106048 30106078 -114176411 + (TTG)n Simple_repeat Simple_repeat 2 31 0 227 340 150 14 chr12 30107127 30107274 -114175215 - MIR SINE MIR -15 247 81 2425 68 10 7 chr12 30107371 30107680 -114174809 + AluY SINE Alu 2 311 0 197 363 47 18 chr12 30107894 30108065 -114174424 - L2 LINE L2 -398 2916 2741 281 320 96 37 chr12 30108549 30108727 -114173762 - MER5A DNA MER1_type -1 188 2 217 239 87 87 chr12 30109762 30109854 -114172635 - L2 LINE L2 -66 3206 3115 1902 161 13 13 chr12 30110546 30110856 -114171633 - AluJo SINE Alu -2 310 1 330 87 0 0 chr12 30112807 30112853 -114169636 + (CCTA)n Simple_repeat Simple_repeat 2 47 0 357 43 0 0 chr12 30114092 30114139 -114168350 + (CA)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr12 30114138 30114162 -114168327 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 252 0 0 0 chr12 30117085 30117113 -114165376 + (CA)n Simple_repeat Simple_repeat 1 28 0 210 273 30 15 chr12 30117948 30118014 -114164475 - MER5A DNA MER1_type -95 94 28 203 263 26 26 chr12 30117955 30118031 -114164458 + MER5A DNA MER1_type 114 189 0 * 333 293 0 0 chr12 30118779 30118878 -114163611 - L1M4 LINE L1 -2305 3841 3743 685 294 151 12 chr12 30118887 30119571 -114162918 - L1M4 LINE L1 -2535 3611 2833 211 341 35 24 chr12 30119605 30119690 -114162799 + MIR SINE MIR 1 86 -176 218 254 127 0 chr12 30119699 30119770 -114162719 - L2 LINE L2 -44 3269 3190 491 299 67 46 chr12 30119790 30119984 -114162505 + MIR SINE MIR 63 260 -2 331 318 23 53 chr12 30120155 30120287 -114162202 + L2 LINE L2 3144 3271 -1 1938 263 105 41 chr12 30120348 30121355 -114161134 - L2 LINE L2 0 3313 2256 2247 123 8 19 chr12 30122550 30122915 -114159574 + MER46B DNA MER2_type 1 236 0 286 317 121 18 chr12 30123109 30123333 -114159156 - MIR SINE MIR -1 261 15 449 290 86 108 chr12 30124107 30124397 -114158092 - L1MC/D LINE L1 -2002 5806 5530 2366 103 0 0 chr12 30124397 30124709 -114157780 - AluSx SINE Alu 0 312 1 449 290 86 108 chr12 30124709 30124929 -114157560 - L1MC/D LINE L1 -2278 5530 5307 517 315 36 12 chr12 30125045 30125210 -114157279 + MIR SINE MIR 5 173 -89 1784 159 3 20 chr12 30125338 30125639 -114156850 + AluJb SINE Alu 1 296 -16 239 189 261 72 chr12 30126085 30126196 -114156293 + MIR SINE MIR 76 207 -55 382 119 10 10 chr12 30126662 30126856 -114155633 + AluJb SINE Alu 1 291 -11 2047 52 0 0 chr12 30128231 30128482 -114154007 - L1PA4 LINE L1 -5875 271 21 * 41522 38 4 2 chr12 30128480 30134326 -114148163 + L1PA4 LINE L1 296 6155 0 2219 110 0 0 chr12 30135475 30135775 -114146714 - AluSx SINE Alu -12 300 1 23 0 0 0 chr12 30136383 30136406 -114146083 + AT_rich Low_complexity Low_complexity 1 23 0 222 163 47 0 chr12 30136421 30136464 -114146025 - L2 LINE L2 0 3313 3269 203 302 19 0 chr12 30138156 30138209 -114144280 - L2 LINE L2 -6 3307 3254 496 264 42 61 chr12 30138229 30138441 -114144048 - MIR SINE MIR -6 256 49 22 35 0 0 chr12 30141008 30141037 -114141452 + AT_rich Low_complexity Low_complexity 1 29 0 2267 97 0 10 chr12 30143312 30143611 -114138878 + AluSc SINE Alu 3 298 -11 22 0 0 0 chr12 30143685 30143707 -114138782 + AT_rich Low_complexity Low_complexity 1 22 0 1483 217 10 13 chr12 30143782 30144081 -114138408 + AluJo SINE Alu 2 299 -13 21 0 0 0 chr12 30146506 30146527 -114135962 + AT_rich Low_complexity Low_complexity 1 21 0 207 146 0 0 chr12 30146754 30146795 -114135694 + (TC)n Simple_repeat Simple_repeat 2 42 0 1809 140 3 20 chr12 30146798 30147091 -114135398 - AluJo SINE Alu -24 288 1 1990 124 14 7 chr12 30147441 30147732 -114134757 - AluSx SINE Alu -19 293 1 345 357 48 29 chr12 30148127 30148337 -114134152 - MIR SINE MIR -44 218 5 1186 256 115 19 chr12 30149475 30149885 -114132604 - L1MC4a LINE L1 -1924 5884 5436 510 209 0 0 chr12 30151050 30151141 -114131348 + AluJ/FLAM SINE Alu 1 91 -221 1492 163 0 4 chr12 30151145 30151385 -114131104 + AluJo SINE Alu 64 302 -10 2138 126 3 7 chr12 30151599 30151908 -114130581 - AluJb SINE Alu -4 308 1 482 282 23 0 chr12 30152320 30152451 -114130038 - MIR SINE MIR -98 164 31 258 263 0 18 chr12 30152983 30153040 -114129449 + L2 LINE L2 3143 3198 -74 7802 199 116 30 chr12 30155667 30157801 -114124688 - Cheshire DNA MER1_type -2 2418 83 2327 101 0 3 chr12 30157801 30158109 -114124380 + AluSx SINE Alu 3 309 -3 7802 199 116 30 chr12 30158109 30158200 -114124289 - Cheshire DNA MER1_type -2337 83 1 902 165 96 74 chr12 30158833 30159063 -114123426 - MER46A DNA MER2_type 0 236 2 23 33 0 0 chr12 30159212 30159242 -114123247 + AT_rich Low_complexity Low_complexity 1 30 0 2200 212 82 25 chr12 30159396 30159967 -114122522 + MER20B DNA MER1_type 42 645 -138 21 0 0 0 chr12 30160668 30160689 -114121800 + AT_rich Low_complexity Low_complexity 1 21 0 382 240 29 29 chr12 30160790 30160894 -114121595 + L2 LINE L2 3210 3313 0 2105 100 10 3 chr12 30161446 30161735 -114120754 - AluSq SINE Alu -17 296 6 2107 120 3 10 chr12 30162387 30162688 -114119801 - AluSx SINE Alu -13 299 1 1505 164 87 19 chr12 30163798 30164108 -114118381 + L1MC1 LINE L1 5990 6320 -13 629 306 123 13 chr12 30165360 30165817 -114116672 + L1ME4a LINE L1 5315 5821 -1987 406 183 39 44 chr12 30165856 30166036 -114116453 + (TA)n Simple_repeat Simple_repeat 2 180 0 327 193 28 150 chr12 30166086 30166232 -114116257 + L1ME4a LINE L1 5931 6045 -76 1055 111 115 69 chr12 30166232 30166383 -114116106 + MER30 DNA MER1_type 4 169 -61 2040 124 3 17 chr12 30166383 30166682 -114115807 + AluSx SINE Alu 1 295 -17 1055 111 115 69 chr12 30166682 30166747 -114115742 + MER30 DNA MER1_type 169 230 0 327 193 28 150 chr12 30166747 30166813 -114115676 + L1ME4a LINE L1 6045 6117 -4 1750 114 25 85 chr12 30167712 30168028 -114114461 + AluSq SINE Alu 1 297 -16 304 324 88 11 chr12 30168440 30168622 -114113867 - MIR SINE MIR -46 216 21 41 66 0 0 chr12 30168785 30168861 -114113628 + AT_rich Low_complexity Low_complexity 1 76 0 26 30 0 0 chr12 30168971 30169004 -114113485 + AT_rich Low_complexity Low_complexity 1 33 0 5347 126 22 14 chr12 30169691 30171040 -114111449 + L1PA16 LINE L1 4807 6160 -6 212 220 9 64 chr12 30171058 30171167 -114111322 + A-rich Low_complexity Low_complexity 5 107 0 310 171 0 71 chr12 30174750 30174820 -114107669 - MIR SINE MIR -69 139 75 * 436 247 65 58 chr12 30174811 30174965 -114107524 - MIR SINE MIR -51 211 57 21 57 0 0 chr12 30176050 30176085 -114106404 + AT_rich Low_complexity Low_complexity 1 35 0 515 221 97 32 chr12 30176536 30176690 -114105799 - MIR SINE MIR -32 230 67 23 86 0 0 chr12 30177354 30177412 -114105077 + AT_rich Low_complexity Low_complexity 1 58 0 2109 123 0 19 chr12 30177476 30177818 -114104671 + AluSx SINE Alu 1 312 0 195 42 0 0 chr12 30177851 30177875 -114104614 + (GAA)n Simple_repeat Simple_repeat 3 26 0 361 283 176 61 chr12 30177915 30178073 -114104416 + L1ME4a LINE L1 5640 5778 -343 1964 137 0 20 chr12 30178073 30178379 -114104110 - AluJb SINE Alu -12 300 1 361 283 176 61 chr12 30178379 30178549 -114103940 + L1ME4a LINE L1 5778 6006 -115 703 325 166 37 chr12 30179391 30180772 -114101717 + L2 LINE L2 1630 3223 -49 249 245 196 0 chr12 30180880 30180982 -114101507 + L2 LINE L2 3192 3313 0 588 265 43 57 chr12 30181529 30181740 -114100749 - MIR SINE MIR -32 230 23 1986 133 26 48 chr12 30182726 30183078 -114099411 + MER2 DNA MER2_type 1 344 0 263 333 68 23 chr12 30183165 30183297 -114099192 - L3 LINE CR1 -1074 503 366 1829 200 71 12 chr12 30183446 30183856 -114098633 + MLT1C LTR MaLR 34 467 0 224 222 96 96 chr12 30184213 30184348 -114098141 + MIR SINE MIR 71 205 -57 888 225 53 0 chr12 30185005 30185192 -114097297 - MIR SINE MIR 0 262 66 21 0 0 0 chr12 30185472 30185493 -114096996 + AT_rich Low_complexity Low_complexity 1 21 0 356 302 78 0 chr12 30187414 30187530 -114094959 - MIR SINE MIR -78 184 60 910 217 49 15 chr12 30187751 30187954 -114094535 + MIR SINE MIR 3 212 -50 1108 78 0 0 chr12 30188222 30188364 -114094125 - HERV9 LTR ERV1 -6416 1983 1842 15770 100 15 8 chr12 30188540 30191002 -114091487 - HERV9 LTR ERV1 -1935 503 2 364 204 31 20 chr12 30191005 30191103 -114091386 - LTR30 LTR ERV1 -80 642 544 4967 124 65 74 chr12 30191103 30192226 -114090263 - pTR5 LTR ERV1 -413 2025 741 1757 142 45 7 chr12 30192433 30192595 -114089894 - AluSx SINE Alu -10 302 123 423 0 0 0 chr12 30192595 30192642 -114089847 + (TG)n Simple_repeat Simple_repeat 2 48 0 1757 142 45 7 chr12 30192642 30192768 -114089721 - AluSx SINE Alu -189 123 3 1947 129 10 20 chr12 30193100 30193395 -114089094 - AluSx SINE Alu -20 292 1 377 289 70 7 chr12 30193415 30193557 -114088932 + Tigger8 DNA MER2_type 83 233 -433 290 282 26 122 chr12 30193611 30193767 -114088722 - L2 LINE L2 -3 3310 3170 22 0 0 0 chr12 30194476 30194498 -114087991 + AT_rich Low_complexity Low_complexity 1 22 0 15214 161 62 39 chr12 30194702 30198335 -114084154 - MER109 Unknown Unknown 0 2432 796 2357 86 0 0 chr12 30198335 30198625 -114083864 + AluSc SINE Alu 1 290 -19 15214 161 62 39 chr12 30198625 30199440 -114083049 - MER109 Unknown Unknown -1636 796 1 424 228 70 0 chr12 30200905 30201019 -114081470 + MLT1F1 LTR MaLR 156 277 -290 600 298 68 10 chr12 30201021 30201313 -114081176 - HAL1 LINE L1 -971 1536 1228 2262 111 0 7 chr12 30201466 30201772 -114080717 + AluSq SINE Alu 1 304 -9 524 270 55 59 chr12 30201914 30202151 -114080338 + MLT1J LTR MaLR 226 461 -50 468 311 128 5 chr12 30202412 30202608 -114079881 + MIR SINE MIR 2 221 -41 424 233 132 13 chr12 30202935 30203206 -114079283 - L1MB8 LINE L1 -5 6161 5835 2135 102 3 20 chr12 30203210 30203515 -114078974 - AluSx SINE Alu -10 302 3 834 289 45 4 chr12 30203642 30203884 -114078605 - MIR SINE MIR -1 261 10 312 277 181 46 chr12 30204445 30204683 -114077806 - L1ME3 LINE L1 -211 5951 5682 280 180 0 49 chr12 30204723 30204784 -114077705 + MER5B DNA MER1_type 8 65 -113 429 284 31 21 chr12 30204825 30205018 -114077471 - L1ME3 LINE L1 -519 5651 5461 2405 90 0 0 chr12 30205104 30205414 -114077075 - AluY SINE Alu -1 310 1 399 274 204 22 chr12 30205511 30205781 -114076708 + Tigger8 DNA MER2_type 206 524 -142 189 200 20 40 chr12 30206132 30206182 -114076307 + L2 LINE L2 3265 3313 0 2119 94 63 0 chr12 30206307 30206594 -114075895 + AluSg SINE Alu 1 305 -5 3370 120 93 9 chr12 30206888 30207469 -114075020 + MER39B LTR ERV1 5 621 -1 286 303 12 47 chr12 30207868 30208089 -114074400 + GA-rich Low_complexity Low_complexity 1 213 0 304 319 6 35 chr12 30208140 30208309 -114074180 + GA-rich Low_complexity Low_complexity 3 166 0 299 213 40 0 chr12 30208598 30208673 -114073816 + MER116 DNA Mariner 1 78 -2 2201 119 0 3 chr12 30210159 30210470 -114072019 + AluSg SINE Alu 1 310 0 280 229 0 0 chr12 30210480 30210541 -114071948 - MER116 DNA Mariner -16 64 4 43772 39 2 4 chr12 30211729 30217891 -114064598 - L1PA3 LINE L1 -1 6154 2 1215 231 7 50 chr12 30218279 30218578 -114063911 - AluJo SINE Alu -25 287 2 21 57 0 0 chr12 30218918 30218953 -114063536 + AT_rich Low_complexity Low_complexity 1 35 0 240 35 0 0 chr12 30219080 30219109 -114063380 + (CA)n Simple_repeat Simple_repeat 2 30 0 2082 97 17 21 chr12 30219439 30219729 -114062760 - AluSx SINE Alu -8 304 16 331 258 148 62 chr12 30219799 30220055 -114062434 - L1ME LINE L1 -315 5806 5529 312 288 29 14 chr12 30220059 30220198 -114062291 + L1ME LINE L1 5574 5714 -407 24 0 0 0 chr12 30220262 30220286 -114062203 + AT_rich Low_complexity Low_complexity 1 24 0 284 273 0 0 chr12 30220828 30220894 -114061595 - MER5B DNA MER1_type -1 177 112 4214 197 85 55 chr12 30220894 30222620 -114059869 + L1MD1 LINE L1 4282 6072 -170 2019 92 7 35 chr12 30222620 30222903 -114059586 + AluSx SINE Alu 32 306 -6 4214 197 85 55 chr12 30222903 30223074 -114059415 + L1MD1 LINE L1 6072 6236 -6 357 300 58 0 chr12 30223109 30223179 -114059310 - MER5B DNA MER1_type -51 127 46 384 40 0 0 chr12 30223179 30223229 -114059260 + (TG)n Simple_repeat Simple_repeat 2 51 0 357 300 58 0 chr12 30223229 30223278 -114059211 - MER5B DNA MER1_type -132 46 1 408 284 42 0 chr12 30223544 30223639 -114058850 - MIR SINE MIR -103 159 61 1370 214 13 23 chr12 30224270 30224574 -114057915 - AluJo SINE Alu -9 303 3 2313 83 0 23 chr12 30224712 30225012 -114057477 - AluY SINE Alu -18 293 1 224 139 0 0 chr12 30225816 30225852 -114056637 - MIR SINE MIR -109 153 118 2916 3 3 0 chr12 30225917 30226234 -114056255 - AluYb8 SINE Alu 0 318 1 3530 97 24 8 chr12 30229382 30229885 -114052604 - MER9 LTR ERVK 0 511 1 608 225 80 14 chr12 30229999 30230137 -114052352 + MIR SINE MIR 6 152 -110 407 236 195 16 chr12 30230149 30230272 -114052217 + MIR SINE MIR 67 211 -51 989 333 75 30 chr12 30230298 30230763 -114051726 + L3 LINE CR1 245 730 -847 561 267 85 49 chr12 30230958 30231205 -114051284 + MIR SINE MIR 7 262 0 375 240 221 26 chr12 30231237 30231391 -114051098 - L3 LINE CR1 -296 1281 1098 243 294 130 20 chr12 30231546 30231692 -114050797 + L2 LINE L2 832 993 -2321 * 365 219 163 56 chr12 30231681 30231841 -114050648 - L2 LINE L2 -1523 1791 1615 603 303 117 9 chr12 30231862 30232212 -114050277 + L2 LINE L2 2224 2611 -703 800 146 116 18 chr12 30232215 30232379 -114050110 + MER3 DNA MER1_type 8 187 -22 281 324 62 44 chr12 30232441 30232666 -114049823 + L2 LINE L2 2717 2945 -369 434 344 31 5 chr12 30232684 30232879 -114049610 - L2 LINE L2 -33 3280 3081 1073 170 18 26 chr12 30232908 30233132 -114049357 + MLT1A1 LTR MaLR 169 353 -12 1913 242 123 2 chr12 30233409 30233922 -114048567 + MER90 LTR ERV1 1 575 0 321 227 15 0 chr12 30234391 30234457 -114048032 + tRNA-Ala-GCG tRNA tRNA 6 72 -3 2654 206 62 6 chr12 30235695 30236380 -114046109 - L1PBa LINE L1 -5700 1163 398 234 250 164 51 chr12 30236489 30236577 -114045912 - L1ME4a LINE L1 -2 6119 6042 1729 164 18 11 chr12 30236577 30236863 -114045626 + AluJo SINE Alu 5 292 -20 234 250 164 51 chr12 30236863 30237086 -114045403 - L1ME4a LINE L1 -79 6042 5773 2388 268 186 24 chr12 30237475 30238482 -114044007 - L2 LINE L2 -387 2927 1758 445 261 128 28 chr12 30238504 30238584 -114043905 + L2 LINE L2 3045 3116 -197 2533 121 3 3 chr12 30238584 30238948 -114043541 + THE1B LTR MaLR 1 364 0 445 261 128 28 chr12 30238948 30239078 -114043411 + L2 LINE L2 3116 3276 -37 21 0 0 0 chr12 30239817 30239838 -114042651 + AT_rich Low_complexity Low_complexity 1 21 0 941 174 19 0 chr12 30240629 30240790 -114041699 + FAM SINE Alu 1 164 -11 2283 54 43 0 chr12 30240794 30241070 -114041419 - AluY SINE Alu -21 290 3 315 287 150 40 chr12 30241455 30241702 -114040787 - L1ME4a LINE L1 -217 5904 5631 5703 72 82 1 chr12 30241928 30242692 -114039797 - LTR12 LTR ERV1 0 826 1 352 282 104 91 chr12 30243656 30244205 -114038284 - L1ME4a LINE L1 -1293 4853 4298 1090 161 49 124 chr12 30244437 30244823 -114037666 + MER34B LTR ERV1 145 501 -64 249 39 39 39 chr12 30244870 30244922 -114037567 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 2607 209 50 15 chr12 30245023 30245565 -114036924 - MER21B LTR ERV1 -125 738 178 237 258 32 32 chr12 30246448 30246510 -114035979 - MIR SINE MIR -64 144 83 7619 26 1 0 chr12 30246565 30248050 -114034439 + L1PA3 LINE L1 4668 6152 -3 22 35 0 0 chr12 30248050 30248079 -114034410 + AT_rich Low_complexity Low_complexity 1 29 0 234 311 99 31 chr12 30250905 30251066 -114031423 - MIR SINE MIR -89 173 2 624 302 46 35 chr12 30251399 30251684 -114030805 + L2 LINE L2 3021 3308 -5 541 197 82 0 chr12 30252602 30252724 -114029765 + FLAM_C SINE Alu 2 133 0 271 182 36 0 chr12 30252965 30253020 -114029469 - L2 LINE L2 -67 3246 3190 583 276 98 66 chr12 30253279 30253448 -114029041 - L2 LINE L2 -18 3295 3133 1812 154 77 3 chr12 30253448 30253759 -114028730 - MER1B DNA MER1_type -3 334 1 583 276 98 66 chr12 30253759 30253955 -114028534 - L2 LINE L2 -180 3133 2918 396 0 0 0 chr12 30254695 30254739 -114027750 + (CA)n Simple_repeat Simple_repeat 2 45 0 2092 88 33 0 chr12 30254797 30255102 -114027387 - L1PA7 LINE L1 -1510 4636 4322 6938 65 0 0 chr12 30255102 30256607 -114025882 + L1PA7 LINE L1 4661 6164 0 218 253 12 60 chr12 30258466 30258549 -114023940 - MIR SINE MIR -7 255 177 2531 261 109 26 chr12 30258709 30259665 -114022824 + L2 LINE L2 597 1631 -1683 308 363 29 23 chr12 30261515 30261686 -114020803 - MIR3 SINE MIR -32 176 5 279 299 103 34 chr12 30262109 30262226 -114020263 + L2 LINE L2 3134 3258 -14 181 355 140 0 chr12 30262714 30262807 -114019682 + L2 LINE L2 3204 3309 -4 2360 93 0 6 chr12 30262808 30263121 -114019368 - AluY SINE Alu 0 311 1 24 0 0 0 chr12 30263128 30263152 -114019337 + AT_rich Low_complexity Low_complexity 1 24 0 357 379 39 0 chr12 30263307 30263460 -114019029 - L2 LINE L2 -283 3030 2872 6703 126 23 9 chr12 30263519 30265200 -114017289 + L1MA3 LINE L1 4600 6305 0 1012 274 66 42 chr12 30265882 30266291 -114016198 + LTR16C LTR ERVL 73 491 0 227 200 0 0 chr12 30267773 30267823 -114014666 + (TA)n Simple_repeat Simple_repeat 1 50 0 393 345 83 49 chr12 30268503 30269020 -114013469 - L2 LINE L2 -11 3261 2728 * 454 303 84 0 chr12 30269002 30269157 -114013332 + MIR SINE MIR 18 185 -77 1163 223 91 22 chr12 30269392 30269710 -114012779 + MER58B DNA MER1_type 1 340 -1 900 158 54 124 chr12 30270681 30270979 -114011510 - THE1C LTR MaLR 0 375 99 3470 47 0 0 chr12 30271247 30271671 -114010818 + L1PA5 LINE L1 5724 6147 -7 21 36 0 0 chr12 30271752 30271780 -114010709 + AT_rich Low_complexity Low_complexity 1 28 0 719 184 42 30 chr12 30271950 30272118 -114010371 + L1ME3A LINE L1 5929 6098 -72 296 175 475 0 chr12 30273204 30273284 -114009205 + MER5A DNA MER1_type 69 186 -3 1639 188 86 21 chr12 30274101 30274899 -114007590 + L1MC3 LINE L1 6492 7542 -243 240 363 30 22 chr12 30274900 30275020 -114007469 - L2 LINE L2 -365 2949 2826 1519 162 48 7 chr12 30275020 30275291 -114007198 + AluJo SINE Alu 5 286 -26 240 363 30 22 chr12 30275291 30275305 -114007184 - L2 LINE L2 -488 2826 2814 361 206 82 31 chr12 30275315 30275412 -114007077 - MER5B DNA MER1_type -1 177 76 233 248 91 8 chr12 30275418 30275539 -114006950 + L1ME4a LINE L1 5821 5951 -219 6564 65 18 8 chr12 30275628 30276507 -114005982 - L1PA8 LINE L1 0 6172 5285 263 360 220 19 chr12 30276769 30277141 -114005348 + L3 LINE CR1 1092 1538 -39 580 217 14 58 chr12 30277619 30277757 -114004732 - L2 LINE L2 0 3313 3182 371 335 77 37 chr12 30278869 30279106 -114003383 + L2 LINE L2 2214 2465 -849 2932 75 75 2 chr12 30279106 30279479 -114003010 + MLT2A1 LTR ERVL 1 408 -36 384 22 0 0 chr12 30279479 30279524 -114002965 + (CA)n Simple_repeat Simple_repeat 2 46 0 2932 75 75 2 chr12 30279524 30279564 -114002925 + MLT2A1 LTR ERVL 408 444 0 371 335 77 37 chr12 30279564 30279598 -114002891 + L2 LINE L2 2465 2496 -818 654 294 65 0 chr12 30279699 30279913 -114002576 + MIR SINE MIR 30 257 -5 374 229 38 46 chr12 30280265 30280396 -114002093 - MER5A DNA MER1_type -28 161 32 593 316 109 0 chr12 30281832 30282145 -114000344 + L1MC4a LINE L1 5539 5885 -1923 504 48 0 0 chr12 30282163 30282226 -114000263 + (CA)n Simple_repeat Simple_repeat 2 64 0 222 364 84 18 chr12 30282990 30283215 -113999274 + L2 LINE L2 2866 3105 -167 366 272 59 22 chr12 30283699 30283835 -113998654 + L1ME4a LINE L1 5975 6115 -6 23 54 0 0 chr12 30284059 30284096 -113998393 + AT_rich Low_complexity Low_complexity 1 37 0 525 42 14 0 chr12 30284096 30284167 -113998322 - MER41B LTR ERV1 -83 552 481 2363 108 0 0 chr12 30285234 30285540 -113996949 - AluSg SINE Alu -4 306 1 263 220 130 10 chr12 30285877 30285977 -113996512 + MER117 DNA MER1_type 5 116 -81 304 212 45 15 chr12 30285996 30286062 -113996427 - L2 LINE L2 0 3313 3246 338 174 81 12 chr12 30286319 30286405 -113996084 + HsTC2 DNA Tc2 11 102 -1796 312 382 109 26 chr12 30286405 30286672 -113995817 - L1MEd LINE L1 -5473 646 358 1075 311 124 31 chr12 30287168 30288036 -113994453 + L2 LINE L2 2358 3303 -10 849 332 88 18 chr12 30288296 30288865 -113993624 - L3 LINE CR1 -112 1465 857 647 197 0 0 chr12 30289934 30290051 -113992438 + FLAM_A SINE Alu 8 124 -18 914 146 251 18 chr12 30290541 30290760 -113991729 + AluSg1 SINE Alu 35 304 -5 2096 92 0 37 chr12 30290771 30290912 -113991577 + AluSx SINE Alu 1 146 -210 2251 60 7 20 chr12 30290912 30291212 -113991277 + AluY SINE Alu 2 297 -14 2096 92 0 37 chr12 30291212 30291437 -113991052 + AluSx SINE Alu 146 356 0 2158 107 10 13 chr12 30293755 30294065 -113988424 + AluSx SINE Alu 1 309 -3 1538 181 47 0 chr12 30295492 30295649 -113986840 - AluJo SINE Alu -23 289 112 230 0 33 0 chr12 30295649 30295679 -113986810 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1538 181 47 0 chr12 30295679 30295797 -113986692 - AluJo SINE Alu -200 112 1 25 0 0 0 chr12 30295797 30295822 -113986667 + AT_rich Low_complexity Low_complexity 1 25 0 1631 180 60 0 chr12 30295837 30296187 -113986302 - L1MA9 LINE L1 -4 6308 5938 235 292 88 15 chr12 30297170 30297307 -113985182 + HAL1 LINE L1 1399 1545 -962 764 282 70 70 chr12 30297318 30298045 -113984444 - L2 LINE L2 -33 3280 2557 1276 255 87 58 chr12 30298074 30298612 -113983877 - L2 LINE L2 -1024 2290 1737 246 246 167 7 chr12 30298638 30298776 -113983713 - HAL1 LINE L1 -944 1563 1404 658 291 134 26 chr12 30298816 30299531 -113982958 - L1MEd LINE L1 -4873 1246 425 1764 198 166 8 chr12 30299972 30300471 -113982018 + L1MA5 LINE L1 5722 6299 -1 1680 167 34 3 chr12 30302406 30302700 -113979789 + AluJb SINE Alu 1 303 -9 423 190 13 0 chr12 30304209 30304288 -113978201 - MER3 DNA MER1_type -129 80 1 2293 94 3 10 chr12 30305083 30305392 -113977097 + AluSx SINE Alu 1 307 -5 235 308 127 59 chr12 30305624 30306050 -113976439 - L2 LINE L2 -1515 1799 1345 23 78 0 0 chr12 30306257 30306308 -113976181 + AT_rich Low_complexity Low_complexity 1 51 0 267 247 0 82 chr12 30306878 30306951 -113975538 - MIR SINE MIR -105 103 37 280 160 0 38 chr12 30308204 30308323 -113974166 + MER5B DNA MER1_type 2 177 -1 593 178 129 61 chr12 30309142 30309219 -113973270 - MER45A DNA AcHobo -1403 178 108 1935 158 0 26 chr12 30309219 30309530 -113972959 + AluJb SINE Alu 1 303 -9 593 178 129 61 chr12 30309530 30309615 -113972874 - MER45A DNA AcHobo -1473 108 5 201 258 48 0 chr12 30309990 30310052 -113972437 + GA-rich Low_complexity Low_complexity 2 66 0 23 54 0 0 chr12 30311016 30311053 -113971436 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr12 30311103 30311130 -113971359 + AT_rich Low_complexity Low_complexity 1 27 0 1882 118 0 15 chr12 30314023 30314295 -113968194 - AluSx SINE Alu -44 268 1 21 0 0 0 chr12 30314304 30314325 -113968164 + AT_rich Low_complexity Low_complexity 1 21 0 967 179 38 0 chr12 30314405 30314589 -113967900 - MER3 DNA MER1_type -16 193 3 313 253 0 0 chr12 30315070 30315149 -113967340 + MER116 DNA Mariner 1 79 -1 1740 193 14 28 chr12 30315451 30315804 -113966685 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chr12 30315833 30315854 -113966635 + AT_rich Low_complexity Low_complexity 1 21 0 790 270 103 11 chr12 30316181 30316607 -113965882 + L2 LINE L2 2684 3156 -157 207 279 16 0 chr12 30316609 30316670 -113965819 + (TATG)n Simple_repeat Simple_repeat 2 63 0 412 270 70 17 chr12 30316727 30316842 -113965647 + L2 LINE L2 3180 3300 -13 219 69 0 0 chr12 30316844 30316873 -113965616 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 186 43 0 0 chr12 30316972 30316995 -113965494 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 305 313 77 34 chr12 30317912 30318145 -113964344 - L3 LINE CR1 -30 1547 1218 540 287 25 6 chr12 30318532 30318689 -113963800 + MIR SINE MIR 47 206 -56 180 176 0 0 chr12 30318741 30318775 -113963714 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1663 171 21 7 chr12 30320154 30320435 -113962054 + AluJb SINE Alu 1 285 -27 401 311 43 102 chr12 30320800 30321260 -113961229 + L2 LINE L2 2832 3264 -8 191 235 39 20 chr12 30321383 30321434 -113961055 - MIR SINE MIR -62 200 149 544 152 22 219 chr12 30322311 30322667 -113959822 + L1MC4 LINE L1 7757 8042 0 2301 105 3 0 chr12 30323136 30323432 -113959057 - AluSx SINE Alu -15 297 1 23 0 0 0 chr12 30324271 30324294 -113958195 + AT_rich Low_complexity Low_complexity 1 23 0 229 377 9 9 chr12 30324743 30324849 -113957640 - MIR SINE MIR -116 146 41 26 0 0 0 chr12 30325737 30325763 -113956726 + AT_rich Low_complexity Low_complexity 1 26 0 2191 134 0 6 chr12 30326971 30327285 -113955204 - AluSx SINE Alu 0 312 1 297 0 0 0 chr12 30327972 30328005 -113954484 + (TG)n Simple_repeat Simple_repeat 2 34 0 877 254 86 5 chr12 30328127 30328347 -113954142 + MIR SINE MIR 3 240 -22 2090 166 28 18 chr12 30328595 30328987 -113953502 - MER57A LTR ERV1 0 403 8 728 238 55 25 chr12 30328997 30329232 -113953257 - MER57A-int LTR ERV1 -22 7515 7274 713 131 25 0 chr12 30329246 30329368 -113953121 - LTR54B LTR ERV1 -373 125 1 5530 189 26 59 chr12 30329369 30330588 -113951901 - MER57A-int LTR ERV1 -394 7143 5971 2420 99 0 10 chr12 30330588 30330902 -113951587 - AluSx SINE Alu 0 312 2 5530 189 26 59 chr12 30330902 30331045 -113951444 - MER57A-int LTR ERV1 -1566 5971 5825 5470 176 33 39 chr12 30331375 30332709 -113949780 - MER57A-int LTR ERV1 -1327 3553 3408 183 286 104 13 chr12 30332716 30332793 -113949696 - L2 LINE L2 -23 3249 3166 1645 184 75 16 chr12 30334120 30334549 -113947940 - Charlie1 DNA MER1_type 0 2761 2308 399 208 67 8 chr12 30334545 30334665 -113947824 - Charlie1 DNA MER1_type -2591 170 44 * 2327 200 102 33 chr12 30335544 30336219 -113946270 + MER72 LTR ERV1 1 722 0 291 328 74 33 chr12 30336232 30336409 -113946080 + L2 LINE L2 2901 3060 -212 193 345 63 21 chr12 30337107 30337298 -113945191 + L2 LINE L2 1902 2100 -1214 269 345 90 0 chr12 30337367 30337512 -113944977 + MIR3 SINE MIR 36 193 -15 392 302 62 46 chr12 30337666 30338037 -113944452 + L1ME4a LINE L1 5528 5904 -217 772 344 65 38 chr12 30338736 30339317 -113943172 + L3 LINE CR1 263 859 -718 764 315 59 44 chr12 30340173 30340582 -113941907 - L2 LINE L2 -76 3237 2823 359 326 17 50 chr12 30342700 30342881 -113939608 - MIR SINE MIR -12 250 76 480 226 157 19 chr12 30342956 30343115 -113939374 + MER5A DNA MER1_type 9 189 0 221 285 146 15 chr12 30345200 30345330 -113937159 - MIR3 SINE MIR -54 154 8 261 309 40 96 chr12 30345681 30345930 -113936559 - MIR SINE MIR -14 248 14 206 314 29 29 chr12 30345981 30346086 -113936403 + L2 LINE L2 3188 3292 -21 2251 86 3 19 chr12 30346126 30346439 -113936050 + AluYa5 SINE Alu 1 308 -3 437 319 0 0 chr12 30346720 30346833 -113935656 + MIR SINE MIR 11 123 -139 2396 87 0 3 chr12 30347074 30347374 -113935115 - AluSc SINE Alu -10 299 1 237 279 147 23 chr12 30347938 30348067 -113934422 - MER5A DNA MER1_type -6 183 39 2418 81 7 0 chr12 30349380 30349676 -113932813 + AluSq SINE Alu 2 299 -14 401 303 77 39 chr12 30350267 30350490 -113931999 + MIR SINE MIR 33 252 -10 1982 129 26 0 chr12 30350775 30351047 -113931442 + AluSx SINE Alu 1 279 -33 423 0 0 0 chr12 30351047 30351094 -113931395 + (CA)n Simple_repeat Simple_repeat 1 47 0 431 339 36 27 chr12 30351254 30351482 -113931007 - MIR SINE MIR 0 262 31 1063 92 0 52 chr12 30352177 30352330 -113930159 + FAM SINE Alu 25 169 -16 438 226 101 43 chr12 30353616 30353776 -113928713 + L1ME2 LINE L1 5413 5585 -579 2653 107 0 6 chr12 30353776 30354142 -113928347 + THE1B LTR MaLR 1 364 0 438 226 101 43 chr12 30354142 30354171 -113928318 + L1ME2 LINE L1 5585 5611 -553 302 158 70 7 chr12 30354184 30354476 -113928013 + (TA)n Simple_repeat Simple_repeat 1 310 0 1482 227 75 18 chr12 30354476 30354970 -113927519 + L1ME2 LINE L1 5643 6164 0 434 189 30 113 chr12 30355379 30355597 -113926892 + MER106B DNA MER1_type 29 236 0 522 99 0 0 chr12 30356300 30356381 -113926108 + Alu SINE Alu 231 311 0 189 107 0 0 chr12 30357193 30357221 -113925268 + (T)n Simple_repeat Simple_repeat 1 28 0 879 162 77 121 chr12 30357574 30357913 -113924576 + MER33 DNA MER1_type 1 324 0 437 337 43 0 chr12 30357954 30358117 -113924372 + MIR SINE MIR 2 171 -91 387 236 127 44 chr12 30358581 30358755 -113923734 + MIR SINE MIR 9 191 -62 1330 203 100 8 chr12 30360004 30360265 -113922224 + AluJb SINE Alu 1 285 -27 1171 152 5 11 chr12 30360552 30360736 -113921753 - AluSg/x SINE Alu -9 303 121 5191 36 2 0 chr12 30360746 30361362 -113921127 - L1PA7 LINE L1 -3 6151 5535 370 209 152 0 chr12 30361908 30362013 -113920476 - MER103 DNA DNA -44 122 2 21 36 0 0 chr12 30362613 30362641 -113919848 + AT_rich Low_complexity Low_complexity 1 28 0 252 56 0 0 chr12 30362859 30362886 -113919603 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 -6 2191 96 4 0 chr12 30362886 30363167 -113919322 - AluSq SINE Alu -31 282 1 252 56 0 0 chr12 30363167 30363175 -113919314 + (CAAAAA)n Simple_repeat Simple_repeat 31 38 0 24 67 0 0 chr12 30365770 30365815 -113916674 + AT_rich Low_complexity Low_complexity 1 45 0 925 135 8 0 chr12 30365894 30366027 -113916462 + AluJo SINE Alu 1 134 -178 266 321 46 9 chr12 30366376 30366485 -113916004 - MIR SINE MIR -50 212 100 560 173 19 19 chr12 30366515 30366619 -113915870 + FRAM SINE Alu 60 163 -13 431 241 14 0 chr12 30368949 30369071 -113913418 + MER20B DNA MER1_type 93 219 0 254 302 103 0 chr12 30369150 30369276 -113913213 - L2 LINE L2 -9 3304 3166 778 292 133 61 chr12 30369553 30370409 -113912080 - L2 LINE L2 -903 2411 1494 2264 159 22 26 chr12 30370413 30370829 -113911660 - MLT2D LTR ERVL 0 414 1 2109 136 0 0 chr12 30370982 30371284 -113911205 + AluSq SINE Alu 1 302 -11 772 249 95 119 chr12 30371317 30371885 -113910604 - L2 LINE L2 -5 3308 2699 404 148 0 0 chr12 30371885 30371946 -113910543 - AluS SINE Alu -223 90 30 772 249 95 119 chr12 30371946 30372111 -113910378 - L2 LINE L2 -614 2699 2532 324 208 56 96 chr12 30372115 30372240 -113910249 - MIR SINE MIR -11 251 132 693 263 84 20 chr12 30372305 30372678 -113909811 + LTR16A LTR ERVL 29 445 -12 21 0 0 0 chr12 30374633 30374654 -113907835 + AT_rich Low_complexity Low_complexity 1 21 0 413 207 83 16 chr12 30375667 30375788 -113906701 - L1ME4a LINE L1 -4 6117 5989 2087 124 0 7 chr12 30375979 30376296 -113906193 + AluSx SINE Alu 1 315 0 312 27 0 0 chr12 30376989 30377026 -113905463 + (CA)n Simple_repeat Simple_repeat 2 38 0 408 335 113 52 chr12 30378829 30379211 -113903278 - L2 LINE L2 -18 3254 2850 189 226 0 0 chr12 30379390 30379443 -113903046 + G-rich Low_complexity Low_complexity 4 56 0 187 191 16 111 chr12 30379808 30379871 -113902618 - MIR SINE MIR -121 141 85 1258 193 8 103 chr12 30379884 30380283 -113902206 - MLT1A2 LTR MaLR -13 361 1 380 298 0 0 chr12 30380500 30380584 -113901905 - MIR SINE MIR -157 105 22 2602 148 7 15 chr12 30381114 30381772 -113900717 - L1MA9 LINE L1 -608 5704 5050 2416 187 25 25 chr12 30381768 30382334 -113900155 + L1MA9 LINE L1 5710 6275 -37 * 180 347 0 74 chr12 30382955 30383050 -113899439 - MIR3 SINE MIR -12 196 109 584 291 18 44 chr12 30384329 30384556 -113897933 - MIR SINE MIR -13 249 29 521 268 14 0 chr12 30384686 30384824 -113897665 + MER58B DNA MER1_type 202 341 0 1480 179 88 7 chr12 30385476 30385772 -113896717 + AluJb SINE Alu 1 312 0 702 301 50 0 chr12 30386372 30386591 -113895898 - MIR SINE MIR -21 241 12 236 204 0 0 chr12 30389810 30389859 -113892630 + T-rich Low_complexity Low_complexity 1 49 0 17729 28 4 1 chr12 30389862 30392742 -113889747 - L1PA4 LINE L1 -3 6152 3263 1819 151 10 3 chr12 30392742 30393033 -113889456 - AluJo SINE Alu -3 309 17 204 333 69 0 chr12 30393195 30393282 -113889207 - L2 LINE L2 -32 3240 3148 605 291 141 27 chr12 30393915 30394214 -113888275 - L2 LINE L2 -1 3312 2980 261 273 11 57 chr12 30394331 30394345 -113888144 - MIR SINE MIR -157 105 92 3181 102 0 7 chr12 30394345 30394806 -113887683 + MER4C LTR ERV1 5 462 -3 261 273 11 57 chr12 30394806 30394879 -113887610 - MIR SINE MIR -170 92 22 188 244 0 0 chr12 30395162 30395207 -113887282 - MIR SINE MIR -14 248 204 26 30 0 0 chr12 30395258 30395291 -113887198 + AT_rich Low_complexity Low_complexity 1 33 0 371 259 6 28 chr12 30395293 30395404 -113887085 - MIR SINE MIR -61 147 40 751 228 43 0 chr12 30395430 30395592 -113886897 - MER58A DNA MER1_type -40 184 16 2541 96 25 30 chr12 30395604 30395922 -113886567 + LTR56 LTR ERV1 9 327 -118 2137 114 0 0 chr12 30395922 30396244 -113886245 + AluSg SINE Alu 1 322 0 2541 96 25 30 chr12 30396244 30396363 -113886126 + LTR56 LTR ERV1 327 445 0 234 0 0 0 chr12 30397326 30397352 -113885137 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 283 341 81 16 chr12 30398044 30398167 -113884322 + MIR SINE MIR 19 149 -59 221 220 0 0 chr12 30398649 30398699 -113883790 + MIR SINE MIR 157 206 -56 2218 116 0 0 chr12 30401430 30401724 -113880765 - AluSx SINE Alu -18 294 1 862 174 0 0 chr12 30402610 30402792 -113879697 - FLAM_C SINE Alu 0 182 1 202 170 38 38 chr12 30403117 30403170 -113879319 - MIR3 SINE MIR 0 208 156 1582 165 55 44 chr12 30403855 30404345 -113878144 - L1 LINE L1 -1540 4606 4153 201 147 0 0 chr12 30405299 30405333 -113877156 + (TA)n Simple_repeat Simple_repeat 2 35 0 383 331 0 15 chr12 30405337 30405467 -113877022 + L1MC4 LINE L1 6614 6741 -1301 452 333 59 0 chr12 30407015 30407201 -113875288 + MIR SINE MIR 2 198 -64 2324 71 10 0 chr12 30407256 30407550 -113874939 - AluY SINE Alu -13 298 2 1734 160 28 7 chr12 30407566 30407854 -113874635 - AluJb SINE Alu -18 294 1 378 278 191 12 chr12 30407865 30408027 -113874462 - MIR SINE MIR -71 191 1 180 324 93 19 chr12 30408204 30408312 -113874177 + L2 LINE L2 3198 3313 0 321 288 17 21 chr12 30408863 30408969 -113873520 - MIR SINE MIR -63 145 37 198 71 0 0 chr12 30410989 30411017 -113871472 + (A)n Simple_repeat Simple_repeat 1 28 0 3716 161 11 2 chr12 30411130 30411764 -113870725 - L1PA16 LINE L1 -9 6157 5518 303 106 0 0 chr12 30412280 30412327 -113870162 - Alu SINE Alu -6 296 250 373 285 28 35 chr12 30412645 30412789 -113869700 + L2 LINE L2 3171 3313 0 210 305 57 48 chr12 30412828 30412933 -113869556 - L2 LINE L2 -213 3059 2954 309 248 39 46 chr12 30415416 30415569 -113866920 + LTR33 LTR ERVL 367 518 -3 548 309 94 18 chr12 30417280 30417503 -113864986 - MIR SINE MIR -3 259 20 2002 131 10 30 chr12 30417835 30418132 -113864357 - AluSx SINE Alu -21 291 1 392 248 30 15 chr12 30421430 30421563 -113860926 - MER103 DNA DNA -1 165 31 345 299 5 82 chr12 30421762 30421807 -113860682 - L3b LINE CR1 -216 1367 1320 2395 83 13 3 chr12 30421807 30422108 -113860381 + AluSq SINE Alu 1 304 -9 345 299 5 82 chr12 30422108 30422246 -113860243 - L3b LINE CR1 -263 1320 1198 282 235 0 74 chr12 30422896 30422954 -113859535 - L2 LINE L2 -36 3277 3225 297 0 0 0 chr12 30422954 30422987 -113859502 + (GA)n Simple_repeat Simple_repeat 2 34 0 282 235 0 74 chr12 30422987 30423009 -113859480 - L2 LINE L2 -88 3225 3203 1705 290 54 10 chr12 30423204 30423721 -113858768 - L2 LINE L2 -443 2871 2332 327 261 22 22 chr12 30426849 30426941 -113855548 + MER58B DNA MER1_type 242 333 -8 2169 116 0 0 chr12 30428950 30429243 -113853246 + AluSg SINE Alu 1 293 -17 306 0 0 0 chr12 30429243 30429277 -113853212 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 2159 119 17 0 chr12 30429401 30429696 -113852793 - AluSq SINE Alu -12 301 2 738 280 26 0 chr12 30429892 30430124 -113852365 + L2 LINE L2 2819 3056 -257 232 262 66 0 chr12 30430176 30430237 -113852252 + L2 LINE L2 3197 3261 -52 22 35 0 0 chr12 30431529 30431558 -113850931 + AT_rich Low_complexity Low_complexity 1 29 0 486 290 48 65 chr12 30431582 30431830 -113850659 - L2 LINE L2 -51 3262 3019 2294 184 15 36 chr12 30431955 30432236 -113850253 + L1MB5 LINE L1 4886 5171 -1013 2397 93 3 3 chr12 30432236 30432547 -113849942 + AluSq SINE Alu 1 311 -2 2294 184 15 36 chr12 30432547 30433189 -113849300 + L1MB5 LINE L1 5171 5786 -398 1586 197 105 25 chr12 30433201 30433679 -113848810 + MER34 LTR ERV1 27 542 0 1622 214 31 16 chr12 30433680 30433803 -113848686 + L1MB5 LINE L1 5786 5906 -268 3375 110 65 50 chr12 30433803 30434076 -113848413 + MER4B LTR ERV1 1 268 -342 2134 125 7 0 chr12 30434076 30434379 -113848110 - AluSx SINE Alu -7 305 1 3375 110 65 50 chr12 30434379 30434455 -113848034 + MER4B LTR ERV1 268 341 -269 2362 66 3 7 chr12 30434455 30434756 -113847733 + AluY SINE Alu 1 300 -11 3375 110 65 50 chr12 30434756 30435006 -113847483 + MER4B LTR ERV1 341 610 0 1622 214 31 16 chr12 30435006 30435265 -113847224 + L1MB5 LINE L1 5906 6174 0 1920 228 102 24 chr12 30435392 30435590 -113846899 - L1ME1 LINE L1 -5 6972 6791 2261 111 50 25 chr12 30435590 30435952 -113846537 - THE1C LTR MaLR -4 371 1 1920 228 102 24 chr12 30435952 30437003 -113845486 - L1ME1 LINE L1 -186 6791 5613 252 284 23 0 chr12 30437034 30437122 -113845367 - L1ME1 LINE L1 -5442 1417 1328 * 469 295 18 26 chr12 30437099 30437326 -113845163 - L1ME1 LINE L1 -5469 1478 1254 2204 139 13 26 chr12 30437724 30438104 -113844385 + THE1C LTR MaLR 1 375 0 213 333 20 30 chr12 30438904 30439003 -113843486 - L2 LINE L2 0 3272 3175 2549 210 83 10 chr12 30439435 30440035 -113842454 + MER67B LTR ERV1 11 654 -7 242 338 88 0 chr12 30440186 30440266 -113842223 + L3b LINE CR1 1475 1561 -22 255 54 27 0 chr12 30440893 30440930 -113841559 + L1MC5 LINE L1 7189 7226 -735 1538 201 69 70 chr12 30441019 30441690 -113840799 + L1MC5 LINE L1 7226 7895 -66 1847 80 0 0 chr12 30441962 30442187 -113840302 + AluSc SINE Alu 8 232 -77 1461 186 0 52 chr12 30442190 30442497 -113839992 + AluJo SINE Alu 11 301 -11 351 0 0 0 chr12 30442503 30442542 -113839947 + (CA)n Simple_repeat Simple_repeat 2 40 0 3736 159 38 26 chr12 30443475 30444240 -113838249 + LTR1 LTR ERV1 12 785 0 1134 254 88 5 chr12 30444876 30445286 -113837203 + L1ME3A LINE L1 5456 5899 -271 9371 172 152 7 chr12 30445710 30448035 -113834454 + L1PBa LINE L1 8 2670 -4193 3282 80 14 16 chr12 30448029 30448061 -113834428 + L1P5 LINE L1 5278 5309 -842 * 2483 62 0 0 chr12 30448061 30448353 -113834136 + AluY SINE Alu 1 292 -19 192 40 0 0 chr12 30448357 30448382 -113834107 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 3282 80 14 16 chr12 30448382 30448859 -113833630 + L1P5 LINE L1 5312 5791 -360 671 42 89 13 chr12 30448910 30449150 -113833339 + (TA)n Simple_repeat Simple_repeat 1 258 0 31 0 0 0 chr12 30449150 30449181 -113833308 + AT_rich Low_complexity Low_complexity 1 31 0 331 264 22 22 chr12 30449184 30449275 -113833214 - L1MC4 LINE L1 -1339 6703 6613 28 0 0 0 chr12 30449275 30449303 -113833186 + AT_rich Low_complexity Low_complexity 1 28 0 659 135 9 13 chr12 30449303 30449529 -113832960 + (TA)n Simple_repeat Simple_repeat 1 224 0 351 0 0 0 chr12 30449529 30449568 -113832921 + (TG)n Simple_repeat Simple_repeat 2 40 0 2320 134 0 8 chr12 30449569 30449942 -113832547 + L1PB1 LINE L1 5782 6151 0 401 324 97 40 chr12 30450265 30450512 -113831977 + L2 LINE L2 2958 3218 -54 190 268 120 84 chr12 30451316 30451458 -113831031 - MIR SINE MIR -84 178 32 204 352 97 34 chr12 30452227 30452403 -113830086 + MER5A DNA MER1_type 1 187 -2 2081 135 10 0 chr12 30452449 30452737 -113829752 - AluSx SINE Alu -21 291 1 287 315 11 22 chr12 30453615 30453704 -113828785 + MER5A DNA MER1_type 98 185 -4 222 37 0 0 chr12 30453815 30453842 -113828647 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1250 197 35 3 chr12 30454090 30454400 -113828089 - MER33 DNA MER1_type 0 324 5 2289 107 10 3 chr12 30455492 30455802 -113826687 - AluSx SINE Alu 0 312 1 284 269 39 0 chr12 30456417 30456547 -113825942 + MLT1J1 LTR MaLR 21 155 -291 486 231 9 131 chr12 30456583 30456904 -113825585 + L1MC5 LINE L1 7630 7911 -50 301 386 43 25 chr12 30458011 30458174 -113824315 - L2 LINE L2 0 3272 3107 2026 139 0 0 chr12 30458198 30458472 -113824017 + AluSx SINE Alu 2 275 -37 41 21 0 0 chr12 30458486 30458534 -113823955 + AT_rich Low_complexity Low_complexity 1 48 0 341 341 20 29 chr12 30458643 30458889 -113823600 - L2 LINE L2 -646 2668 2425 3247 195 11 35 chr12 30459444 30460298 -113822191 + L1MB8 LINE L1 5072 5907 -271 2249 97 10 0 chr12 30460298 30460598 -113821891 - AluSc SINE Alu -6 303 1 3247 195 11 35 chr12 30460598 30460669 -113821820 + L1MB8 LINE L1 5907 5978 -200 248 239 35 42 chr12 30460711 30460853 -113821636 - LTR37B LTR ERV1 -129 339 199 228 135 0 0 chr12 30461737 30461774 -113820715 + (TA)n Simple_repeat Simple_repeat 1 37 0 1637 93 23 0 chr12 30461775 30461989 -113820500 - AluSg/x SINE Alu -10 302 84 1950 137 43 0 chr12 30463241 30463540 -113818949 + AluSx SINE Alu 1 312 0 27 0 0 0 chr12 30463730 30463757 -113818732 + AT_rich Low_complexity Low_complexity 1 27 0 2009 161 57 31 chr12 30464647 30465068 -113817421 + MSTB1 LTR MaLR 1 432 0 583 281 103 51 chr12 30465444 30465918 -113816571 + MLT1H LTR MaLR 51 549 0 198 0 0 0 chr12 30466194 30466216 -113816273 + (TA)n Simple_repeat Simple_repeat 1 22 0 699 265 0 29 chr12 30466410 30466614 -113815875 + MIR SINE MIR 17 214 -48 2010 115 3 45 chr12 30466837 30467149 -113815340 - AluSx SINE Alu -9 303 5 2345 75 0 53 chr12 30467787 30468105 -113814384 + AluSg SINE Alu 1 301 -9 2279 116 0 0 chr12 30468932 30469234 -113813255 - AluSq SINE Alu -11 302 1 2289 16 0 0 chr12 30469377 30469632 -113812857 + AluYa5 SINE Alu 55 309 -2 221 0 35 0 chr12 30469636 30469665 -113812824 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 207 254 0 18 chr12 30469963 30470018 -113812471 + (CAA)n Simple_repeat Simple_repeat 2 55 0 362 300 18 0 chr12 30470018 30470128 -113812361 - MIR SINE MIR -27 235 124 318 333 99 25 chr12 30470340 30470502 -113811987 + MIR3 SINE MIR 28 201 -7 2508 147 4 46 chr12 30471056 30471552 -113810937 + MER31A LTR ERV1 1 475 -10 2331 60 31 50 chr12 30471633 30471950 -113810539 - AluY SINE Alu 0 311 1 331 314 186 21 chr12 30473249 30473443 -113809046 - MIR SINE MIR -16 246 21 910 162 16 54 chr12 30473542 30473727 -113808762 - MSTD LTR MaLR 0 396 219 426 172 11 21 chr12 30473772 30473865 -113808624 - MSTD LTR MaLR -336 92 1 2416 101 0 0 chr12 30473872 30474178 -113808311 - AluSx SINE Alu -6 306 1 334 361 37 11 chr12 30474641 30474832 -113807657 - L2 LINE L2 -410 2904 2709 549 268 202 5 chr12 30475728 30475926 -113806563 - MIR SINE MIR -12 250 14 1810 167 0 20 chr12 30476070 30476370 -113806119 + AluJo SINE Alu 7 300 -12 2093 94 0 28 chr12 30476429 30476765 -113805724 + AluSg SINE Alu 1 328 0 835 276 44 18 chr12 30476916 30477141 -113805348 - MIR SINE MIR -10 252 22 31 58 0 0 chr12 30479004 30479056 -113803433 + AT_rich Low_complexity Low_complexity 1 52 0 2427 96 3 0 chr12 30479164 30479476 -113803013 - AluSp SINE Alu 0 313 1 315 320 163 25 chr12 30479555 30479758 -113802731 + MIR SINE MIR 14 244 -18 493 247 11 86 chr12 30480022 30480196 -113802293 + MER91A DNA MER1_type 13 173 -23 242 239 0 0 chr12 30480251 30480297 -113802192 + MER91A DNA MER1_type 145 190 0 445 243 87 0 chr12 30480790 30480893 -113801596 + MER81 DNA DNA 2 113 -1 408 71 0 0 chr12 30480993 30481049 -113801440 + (CA)n Simple_repeat Simple_repeat 2 57 0 181 238 38 62 chr12 30482619 30482699 -113799790 - L3 LINE CR1 -1193 384 307 2821 163 22 40 chr12 30482920 30483474 -113799015 + MER44D DNA MER2_type 4 602 -3 840 249 87 42 chr12 30483679 30484060 -113798429 + MLT1J1 LTR MaLR 2 399 -47 516 257 93 20 chr12 30484419 30484812 -113797677 + L1ME4a LINE L1 5695 6120 -1 208 154 39 0 chr12 30485109 30485161 -113797328 + GA-rich Low_complexity Low_complexity 1 54 0 567 291 29 34 chr12 30485350 30485843 -113796646 + L1MC5 LINE L1 6309 6799 -1015 2145 96 0 4 chr12 30486260 30486540 -113795949 + AluSx SINE Alu 28 306 -6 1504 196 46 78 chr12 30486650 30487215 -113795274 + L1MC5 LINE L1 7015 7561 -400 3360 205 51 30 chr12 30487421 30488467 -113794022 + L1MD2 LINE L1 5240 6357 -2 1793 178 3 7 chr12 30489263 30489561 -113792928 - AluSx SINE Alu -15 297 1 180 232 18 18 chr12 30490138 30490194 -113792295 + MIR SINE MIR 171 226 -36 21 0 0 0 chr12 30491346 30491367 -113791122 + AT_rich Low_complexity Low_complexity 1 21 0 208 293 171 33 chr12 30491444 30491806 -113790683 + L2 LINE L2 1827 2238 -1076 496 266 7 45 chr12 30491859 30492013 -113790476 + MER63A DNA MER1_type 51 198 -12 2166 198 129 25 chr12 30492402 30493057 -113789432 + L1MC4 LINE L1 7081 7819 -223 1387 191 87 61 chr12 30493057 30493435 -113789054 - MLT1B LTR MaLR 0 390 3 2166 198 129 25 chr12 30493435 30493498 -113788991 + L1MC4 LINE L1 7819 7874 -168 213 280 159 28 chr12 30494080 30494187 -113788302 - MIR SINE MIR -52 210 90 562 269 73 96 chr12 30494233 30494701 -113787788 + MLT1J LTR MaLR 23 479 -32 340 140 0 0 chr12 30494701 30494758 -113787731 - Alu SINE Alu -4 298 242 1709 87 4 9 chr12 30494758 30494987 -113787502 - AluSg SINE Alu -38 272 45 326 283 27 53 chr12 30495840 30496027 -113786462 - MARNA DNA Mariner -342 244 63 3187 150 39 73 chr12 30496271 30496986 -113785503 + LTR8 LTR ERV1 1 691 0 2109 240 60 14 chr12 30497835 30498501 -113783988 + L1MB7 LINE L1 5395 6091 -93 474 159 0 0 chr12 30498526 30498614 -113783875 - L1MA5A LINE L1 -2 6295 6208 2060 108 29 42 chr12 30498644 30499022 -113783467 - L1MA5 LINE L1 -2 6298 5926 267 165 18 9 chr12 30499026 30499107 -113783382 + L1ME1 LINE L1 6095 6177 -1 1274 152 0 0 chr12 30499717 30499927 -113782562 + MER2 DNA MER2_type 1 210 -135 740 208 68 76 chr12 30500014 30500075 -113782414 - MLT1D LTR MaLR -6 461 401 2175 94 22 0 chr12 30500075 30500384 -113782105 + AluSq SINE Alu 1 315 0 740 208 68 76 chr12 30500384 30500721 -113781768 - MLT1D LTR MaLR -66 401 64 2190 110 7 0 chr12 30500721 30501022 -113781467 - AluSc SINE Alu -6 303 1 740 208 68 76 chr12 30501022 30501085 -113781404 - MLT1D LTR MaLR -403 64 2 324 0 0 0 chr12 30501211 30501247 -113781242 + (TA)n Simple_repeat Simple_repeat 1 36 0 512 288 0 16 chr12 30502436 30502561 -113779928 + L2 LINE L2 3190 3312 -1 1086 219 94 88 chr12 30502899 30503397 -113779092 - MLT2B1 LTR ERVL -8 512 12 821 232 53 13 chr12 30503389 30503855 -113778634 + LTR48B LTR ERV1 11 594 -50 * 1773 130 65 14 chr12 30505067 30505359 -113777130 - AluJb SINE Alu -5 307 1 24 32 0 0 chr12 30505437 30505468 -113777021 + AT_rich Low_complexity Low_complexity 1 31 0 1075 181 0 0 chr12 30505468 30505639 -113776850 - AluJo/FRAM SINE Alu -14 298 128 1570 140 112 4 chr12 30505639 30505917 -113776572 - AluSg1 SINE Alu -1 308 1 201 250 0 0 chr12 30506250 30506294 -113776195 + MIR SINE MIR 217 260 -2 1281 242 54 19 chr12 30506643 30507072 -113775417 + LTR16B LTR ERVL 4 447 -17 235 133 89 0 chr12 30507722 30507767 -113774722 - MLT1E LTR MaLR 0 567 519 * 491 300 131 35 chr12 30507766 30508139 -113774350 - MLT1E LTR MaLR -183 410 2 2169 120 3 10 chr12 30508280 30508589 -113773900 + AluSx SINE Alu 1 307 -5 705 84 149 0 chr12 30509303 30509410 -113773079 + THE1B LTR MaLR 1 123 -241 658 128 9 9 chr12 30509408 30509517 -113772972 + THE1B LTR MaLR 256 364 0 * 180 152 0 0 chr12 30509772 30509805 -113772684 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 445 326 107 82 chr12 30509909 30510544 -113771945 + L3 LINE CR1 698 1348 -229 3133 142 17 4 chr12 30510703 30511245 -113771244 + MER34C LTR ERV1 37 585 0 312 297 18 18 chr12 30513452 30513563 -113768926 - L2 LINE L2 -6 3307 3197 525 239 69 64 chr12 30514645 30514833 -113767656 + MIR SINE MIR 38 226 -36 392 150 56 4 chr12 30515931 30516406 -113766083 + (TA)n Simple_repeat Simple_repeat 1 499 0 1669 179 15 0 chr12 30516422 30516696 -113765793 - AluJo SINE Alu -34 278 1 2538 74 0 6 chr12 30517141 30517453 -113765036 + AluY SINE Alu 1 310 -1 4221 209 45 47 chr12 30517885 30518306 -113764183 - Charlie1a DNA MER1_type -1431 1330 910 1894 176 50 58 chr12 30518306 30518712 -113763777 + MLT2C2 LTR ERVL 1 404 -60 402 21 0 0 chr12 30518712 30518759 -113763730 + (CA)n Simple_repeat Simple_repeat 2 48 0 1894 176 50 58 chr12 30518759 30518817 -113763672 + MLT2C2 LTR ERVL 404 461 -3 4221 209 45 47 chr12 30518817 30519216 -113763273 - Charlie1a DNA MER1_type -1851 910 512 1191 209 85 62 chr12 30519216 30519603 -113762886 + MSTD LTR MaLR 1 396 0 4221 209 45 47 chr12 30519603 30520111 -113762378 - Charlie1a DNA MER1_type -2249 512 3 298 320 40 20 chr12 30520360 30520510 -113761979 + Charlie2 DNA MER1_type 173 325 -2457 1145 231 60 7 chr12 30520512 30520928 -113761561 + Charlie2 DNA MER1_type 1856 2293 -569 334 306 9 0 chr12 30520937 30521045 -113761444 - MIR SINE MIR 0 262 154 2270 112 42 8 chr12 30521045 30521401 -113761088 - THE1C LTR MaLR 0 375 8 414 0 0 0 chr12 30521405 30521451 -113761038 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1443 223 0 11 chr12 30521454 30521737 -113760752 - AluJo SINE Alu -30 282 3 364 228 236 31 chr12 30521745 30521872 -113760617 - MIR SINE MIR -109 153 1 1111 243 55 35 chr12 30521892 30522151 -113760338 + Charlie2 DNA MER1_type 2309 2561 -301 2321 58 0 24 chr12 30522151 30522465 -113760024 + AluY SINE Alu 1 307 0 1111 243 55 35 chr12 30522465 30522747 -113759742 + Charlie2 DNA MER1_type 2561 2862 0 1445 289 15 26 chr12 30523553 30524085 -113758404 + L1ME3A LINE L1 119 644 -5475 2377 70 0 0 chr12 30524085 30524369 -113758120 + AluY SINE Alu 17 300 -11 305 237 32 38 chr12 30524456 30524588 -113757901 + HsTC2 DNA Tc2 35 1898 0 307 308 141 32 chr12 30524591 30525088 -113757401 - L1MEd LINE L1 -5299 820 270 347 311 69 23 chr12 30525846 30526513 -113755976 + L1ME3A LINE L1 849 1581 -4729 491 256 107 29 chr12 30526728 30527103 -113755386 + L1ME3A LINE L1 2210 2613 -3516 1959 202 51 20 chr12 30527119 30527625 -113754864 - Charlie1b DNA MER1_type 0 523 2 302 318 19 0 chr12 30527745 30527852 -113754637 + L1ME3A LINE L1 2705 2813 -3316 471 279 90 60 chr12 30527859 30528055 -113754434 + L1ME3A LINE L1 4051 4239 -1890 2239 125 0 3 chr12 30528055 30528368 -113754121 + AluSx SINE Alu 1 312 0 471 279 90 60 chr12 30528368 30528691 -113753798 + L1ME3A LINE L1 4239 4586 -1543 1334 145 100 52 chr12 30528856 30529125 -113753364 + AluJo SINE Alu 1 282 -30 661 278 50 56 chr12 30529487 30530109 -113752380 + L1ME3A LINE L1 5293 5910 -243 2192 105 9 29 chr12 30530429 30530744 -113751745 - AluSx SINE Alu -3 309 1 1102 138 12 0 chr12 30530754 30530914 -113751575 - AluSp SINE Alu -14 299 138 2335 75 0 0 chr12 30532771 30533093 -113749396 - AluY SINE Alu 0 322 1 216 0 0 0 chr12 30533203 30533227 -113749262 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 945 155 20 0 chr12 30533229 30533377 -113749112 - FRAM SINE Alu -31 145 1 199 259 93 0 chr12 30533870 30533924 -113748565 - MIR3 SINE MIR -25 183 125 186 232 159 14 chr12 30534004 30534073 -113748416 + MER5A DNA MER1_type 31 109 -80 1960 133 3 7 chr12 30534134 30534435 -113748054 + AluSg SINE Alu 1 300 -10 650 224 59 0 chr12 30534474 30534626 -113747863 + MIR SINE MIR 21 181 -81 199 220 40 0 chr12 30534682 30534732 -113747757 + L2 LINE L2 3178 3229 -84 230 149 75 60 chr12 30534863 30534930 -113747559 + LTR33A LTR ERVL 121 188 -335 506 283 0 8 chr12 30535175 30535295 -113747194 - L2 LINE L2 -1 3312 3194 1682 143 24 0 chr12 30536617 30536868 -113745621 - AluSq SINE Alu -56 257 1 616 35 118 0 chr12 30536969 30537054 -113745435 + MER85 DNA T2_type 1 95 -44 246 278 157 17 chr12 30538431 30538546 -113743943 + MIR SINE MIR 16 146 -62 572 222 105 0 chr12 30538568 30538721 -113743768 - MIR SINE MIR -63 199 31 758 271 31 26 chr12 30540689 30540918 -113741571 + MIR SINE MIR 29 258 -4 2257 112 0 0 chr12 30541832 30542135 -113740354 - AluSg SINE Alu -7 303 1 2328 79 23 0 chr12 30542654 30542958 -113739531 + AluSp SINE Alu 1 311 -2 281 295 122 19 chr12 30543109 30543265 -113739224 + MIR SINE MIR 23 194 -68 299 325 206 5 chr12 30543481 30543675 -113738814 - MIR SINE MIR -17 245 13 186 43 0 0 chr12 30544712 30544735 -113737754 + (CA)n Simple_repeat Simple_repeat 2 24 0 2026 145 3 0 chr12 30545126 30545423 -113737066 - AluSg SINE Alu -12 298 1 1254 208 36 40 chr12 30545429 30545629 -113736860 - AluJo SINE Alu -10 302 102 3062 74 18 48 chr12 30545629 30546087 -113736402 + MLT2A1 LTR ERVL 1 444 0 1254 208 36 40 chr12 30546087 30546189 -113736300 - AluJo SINE Alu -210 102 1 262 323 57 40 chr12 30546901 30547025 -113735464 - MIR SINE MIR -64 144 19 24 53 0 0 chr12 30547679 30547717 -113734772 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 30548064 30548085 -113734404 + AT_rich Low_complexity Low_complexity 1 21 0 743 301 36 16 chr12 30548455 30548704 -113733785 - MIR SINE MIR -7 255 2 883 51 0 17 chr12 30549712 30549830 -113732659 + L1PA4 LINE L1 6038 6153 -2 998 197 0 16 chr12 30550344 30550527 -113731962 - AluJo SINE Alu -13 299 120 2213 114 13 0 chr12 30550758 30551064 -113731425 + AluSx SINE Alu 1 310 -2 535 222 56 0 chr12 30552302 30552410 -113730079 + L2 LINE L2 3200 3313 0 579 270 161 5 chr12 30553162 30553373 -113729116 - MIR SINE MIR -12 250 7 581 309 68 9 chr12 30553893 30554113 -113728376 + MIR SINE MIR 3 235 -27 1655 216 50 12 chr12 30554157 30554574 -113727915 - MER63B DNA MER1_type 0 436 4 294 288 68 34 chr12 30554793 30554911 -113727578 - L2 LINE L2 -4 3268 3147 683 285 109 33 chr12 30555128 30555480 -113727009 + L2 LINE L2 2369 2693 -620 297 0 0 0 chr12 30555480 30555513 -113726976 + (CA)n Simple_repeat Simple_repeat 2 34 0 683 285 109 33 chr12 30555513 30555963 -113726526 + L2 LINE L2 2693 3312 -1 1963 137 46 8 chr12 30556134 30556485 -113726004 + MER93b LTR ERV1 10 373 0 269 288 0 0 chr12 30556912 30556978 -113725511 + GA-rich Low_complexity Low_complexity 1 66 0 603 268 122 30 chr12 30557317 30557546 -113724943 - HAL1 LINE L1 -38 2469 2194 240 59 0 0 chr12 30557546 30557580 -113724909 + (CA)n Simple_repeat Simple_repeat 2 35 0 603 268 122 30 chr12 30557580 30557712 -113724777 - HAL1 LINE L1 -313 2194 2075 653 312 116 5 chr12 30557760 30558148 -113724341 + L1ME2 LINE L1 5454 5884 -280 399 207 99 9 chr12 30558850 30558961 -113723528 + MIR SINE MIR 29 149 -113 187 371 0 0 chr12 30559118 30559180 -113723309 + L2 LINE L2 3134 3195 -77 2227 114 0 0 chr12 30559283 30559582 -113722907 - AluSc SINE Alu -10 299 1 21 0 0 0 chr12 30559592 30559613 -113722876 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 30560558 30560579 -113721910 + AT_rich Low_complexity Low_complexity 1 21 0 284 190 51 25 chr12 30560764 30560843 -113721646 + Charlie3 DNA MER1_type 2330 2410 -300 387 276 151 33 chr12 30561624 30561776 -113720713 + MIR SINE MIR 24 193 -69 969 184 32 22 chr12 30562677 30562862 -113719627 - MER20 DNA MER1_type -3 216 30 2645 84 5 79 chr12 30563062 30563455 -113719034 - THE1B LTR MaLR 0 364 1 1972 141 7 3 chr12 30564631 30564930 -113717559 + AluJb SINE Alu 1 300 -12 1884 214 111 94 chr12 30564963 30565346 -113717143 + L1MC4 LINE L1 6661 7036 -1006 1733 145 176 0 chr12 30565346 30565642 -113716847 + MER7A DNA MER2_type 1 346 0 1884 214 111 94 chr12 30565642 30566123 -113716366 + L1MC4 LINE L1 7036 7540 -502 215 261 9 27 chr12 30566220 30566331 -113716158 + (TATAA)n Simple_repeat Simple_repeat 1 109 0 * 340 151 70 35 chr12 30566282 30566454 -113716035 + (TA)n Simple_repeat Simple_repeat 1 178 0 258 215 17 64 chr12 30566429 30566601 -113715888 + (TTATA)n Simple_repeat Simple_repeat 1 164 0 * 232 157 39 0 chr12 30566601 30566652 -113715837 + L1MC4 LINE L1 7577 7629 -413 479 227 69 74 chr12 30566681 30566897 -113715592 + L1MC4 LINE L1 7821 8035 -7 1732 134 27 30 chr12 30567316 30567614 -113714875 + AluJb SINE Alu 1 297 -15 1056 189 66 46 chr12 30569544 30569803 -113712686 + MER99 DNA DNA 204 467 -361 794 179 0 0 chr12 30569805 30569928 -113712561 + FRAM SINE Alu 27 149 -27 3525 232 113 12 chr12 30570546 30571758 -113710731 - Charlie2a DNA MER1_type -1 2861 1528 1229 281 48 34 chr12 30571814 30572251 -113710238 - Charlie2a DNA MER1_type -2308 474 32 21 0 0 0 chr12 30572332 30572353 -113710136 + AT_rich Low_complexity Low_complexity 1 21 0 2182 124 0 10 chr12 30572372 30572670 -113709819 - AluSx SINE Alu -17 295 1 276 241 72 0 chr12 30573177 30573260 -113709229 - L1MC4 LINE L1 -1339 6703 6615 383 290 98 22 chr12 30575150 30575333 -113707156 + L1ME LINE L1 5497 5693 -428 257 115 0 39 chr12 30575334 30575386 -113707103 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 767 355 103 2 chr12 30576335 30576741 -113705748 + L3 LINE CR1 406 852 -725 272 331 33 26 chr12 30576876 30577027 -113705462 - L2 LINE L2 -4 3309 3158 264 349 47 9 chr12 30577300 30577406 -113705083 + L2 LINE L2 3203 3312 -1 817 278 135 18 chr12 30577488 30577936 -113704553 + Charlie8 DNA MER1_type 2 489 -1928 189 0 0 0 chr12 30578838 30578859 -113703630 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1200 330 18 48 chr12 30578903 30579576 -113702913 - ERVL LTR ERVL -3899 1865 1213 248 302 122 29 chr12 30579587 30579726 -113702763 - MER5B DNA MER1_type 0 178 27 1300 266 54 67 chr12 30580677 30581308 -113701181 - MER21B LTR ERV1 -143 720 98 308 257 21 78 chr12 30581278 30581419 -113701070 - MER21B LTR ERV1 -408 197 22 * 653 289 53 33 chr12 30582116 30582420 -113700069 - L2 LINE L2 -195 3118 2809 2214 103 7 3 chr12 30582519 30582811 -113699678 - AluSc SINE Alu -16 293 1 1682 263 77 58 chr12 30584154 30584805 -113697684 - MLT2F LTR ERVL 0 663 1 4398 191 65 32 chr12 30585130 30586278 -113696211 + L1MD2 LINE L1 5176 6356 -3 191 357 0 0 chr12 30586405 30586461 -113696028 + MIR SINE MIR 194 249 -13 1393 209 7 20 chr12 30586967 30587269 -113695220 + AluJo SINE Alu 6 303 -9 382 274 108 110 chr12 30588985 30589511 -113692978 + L1M2 LINE L1 612 1136 -5713 21 36 0 0 chr12 30590336 30590364 -113692125 + AT_rich Low_complexity Low_complexity 1 28 0 813 182 0 0 chr12 30591164 30591296 -113691193 + FLAM_C SINE Alu 1 132 -1 2024 109 11 0 chr12 30591689 30592005 -113690484 + AluSc SINE Alu 1 319 0 772 139 16 0 chr12 30592446 30592568 -113689921 + MER31A LTR ERV1 1 124 -361 285 81 0 0 chr12 30592566 30592603 -113689886 - MER31A LTR ERV1 -331 154 118 * 832 150 36 14 chr12 30592599 30592739 -113689750 + MER31A LTR ERV1 343 485 0 516 260 68 64 chr12 30593049 30593324 -113689165 + MER45R DNA AcHobo 312 587 -994 1133 291 110 20 chr12 30593324 30593815 -113688674 - MER34 LTR ERV1 0 542 8 1424 154 56 79 chr12 30593822 30594166 -113688323 + MER45R DNA AcHobo 586 985 -596 2037 88 40 0 chr12 30594166 30594438 -113688051 - AluSx SINE Alu -29 283 1 1424 154 56 79 chr12 30594438 30594617 -113687872 + MER45R DNA AcHobo 985 1167 -414 1486 264 43 0 chr12 30594623 30594991 -113687498 + MER63 DNA MER1_type 674 1057 -3 632 235 56 51 chr12 30595095 30595287 -113687202 + MER77 LTR ERV1 56 248 -357 352 241 117 88 chr12 30595287 30595708 -113686781 + MER34C LTR ERV1 2 437 -105 1715 126 96 11 chr12 30595718 30595989 -113686500 + AluSg SINE Alu 1 294 -16 3119 85 30 7 chr12 30595989 30596425 -113686064 + L1PA8 LINE L1 5694 6139 -33 421 242 73 0 chr12 30596536 30596701 -113685788 + (CATG)n Simple_repeat Simple_repeat 2 178 0 349 222 64 35 chr12 30596801 30596972 -113685517 + (CATG)n Simple_repeat Simple_repeat 2 177 0 270 253 71 12 chr12 30596996 30597166 -113685323 + (CATA)n Simple_repeat Simple_repeat 1 180 0 309 238 66 20 chr12 30597204 30597355 -113685134 + (CATG)n Simple_repeat Simple_repeat 1 158 0 263 245 90 0 chr12 30597810 30597965 -113684524 + (CATG)n Simple_repeat Simple_repeat 2 170 0 233 204 88 29 chr12 30599311 30599448 -113683041 + (CATG)n Simple_repeat Simple_repeat 1 145 0 219 179 83 24 chr12 30599576 30599660 -113682829 + (CATG)n Simple_repeat Simple_repeat 1 89 0 874 226 0 87 chr12 30600172 30600367 -113682122 - MER45A DNA AcHobo 0 178 1 411 316 31 25 chr12 30601204 30601400 -113681089 - MER117 DNA MER1_type 0 197 1 248 195 149 35 chr12 30602073 30602160 -113680329 + MIR SINE MIR 161 257 -5 343 350 19 6 chr12 30603372 30603529 -113678960 + L1MEc LINE L1 1644 1802 -4594 1057 235 37 7 chr12 30603531 30603803 -113678686 + L1MB7 LINE L1 5905 6184 0 187 259 74 19 chr12 30604928 30604982 -113677507 - L3b LINE CR1 -236 1347 1291 593 141 12 0 chr12 30605934 30606019 -113676470 + AluJo SINE Alu 49 134 -178 2445 74 7 0 chr12 30606020 30606319 -113676170 + AluY SINE Alu 1 301 -10 1730 173 0 24 chr12 30606327 30606616 -113675873 + AluJo SINE Alu 1 282 -30 2990 177 35 30 chr12 30606939 30607662 -113674827 - MER11A LTR ERVK 0 1266 359 2340 39 42 0 chr12 30607662 30607945 -113674544 - AluY SINE Alu -16 295 1 435 229 296 28 chr12 30608044 30608223 -113674266 + MIR SINE MIR 19 245 -17 255 305 0 38 chr12 30608261 30608366 -113674123 + MER117 DNA MER1_type 97 197 0 2346 112 0 0 chr12 30609154 30609466 -113673023 + AluSq SINE Alu 2 313 0 737 298 3 3 chr12 30609771 30610073 -113672416 - L1M4 LINE L1 -2366 3780 3479 312 202 12 60 chr12 30610084 30610168 -113672321 - L1M4 LINE L1 -2979 3167 3088 1257 250 93 19 chr12 30610335 30610382 -113672107 + L1ME2 LINE L1 3805 3847 -2299 1904 120 0 11 chr12 30610382 30610657 -113671832 + AluSc SINE Alu 23 294 -15 1257 250 93 19 chr12 30610657 30611197 -113671292 + L1ME2 LINE L1 3847 4436 -1710 556 212 0 9 chr12 30611197 30611310 -113671179 + Tigger3(Golem) DNA MER2_type 1 112 -2917 960 184 127 0 chr12 30611318 30611546 -113670943 - Tigger2 DNA MER2_type -10 2708 2452 4076 156 23 6 chr12 30611613 30612183 -113670306 - Tigger2 DNA MER2_type -1974 744 157 2093 133 0 0 chr12 30612183 30612484 -113670005 - AluSg SINE Alu -8 302 2 4076 156 23 6 chr12 30612484 30612643 -113669846 - Tigger2 DNA MER2_type -2561 157 2 2844 123 11 19 chr12 30612643 30613110 -113669379 + Tigger3(Golem) DNA MER2_type 2566 3028 -1 2398 242 57 31 chr12 30613156 30614843 -113667646 + L1ME2 LINE L1 4457 6332 -2 40691 37 21 1 chr12 30615144 30621168 -113661321 + L1PA3 LINE L1 2 6151 -4 534 220 89 6 chr12 30621947 30622115 -113660374 - MER53 DNA DNA 0 189 8 536 280 101 0 chr12 30626170 30626338 -113656151 + MIR SINE MIR 5 189 -73 1701 173 75 21 chr12 30626339 30626374 -113656115 - MLT2D LTR ERVL -6 408 376 321 26 0 0 chr12 30626374 30626412 -113656077 + (TG)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chr12 30626414 30626435 -113656054 + (GA)n Simple_repeat Simple_repeat 2 22 0 1701 173 75 21 chr12 30626435 30626783 -113655706 - MLT2D LTR ERVL -38 376 1 180 0 0 0 chr12 30627281 30627301 -113655188 + (CTATT)n Simple_repeat Simple_repeat 2 21 0 1507 231 14 6 chr12 30627302 30627648 -113654841 - MLT1A1 LTR MaLR -16 349 1 7724 24 0 0 chr12 30627661 30628856 -113653633 + L1PA3 LINE L1 4957 6155 0 207 259 0 0 chr12 30629218 30629272 -113653217 + A-rich Low_complexity Low_complexity 2 55 0 674 227 167 35 chr12 30630466 30630748 -113651741 + LTR50 LTR ERVL 3 321 -474 371 169 81 105 chr12 30630781 30630905 -113651584 + LTR50 LTR ERVL 395 515 -280 1009 219 46 28 chr12 30630905 30631230 -113651259 + L1M4 LINE L1 4089 4419 -1727 1050 288 66 58 chr12 30631279 30631914 -113650575 + ERVL LTR ERVL 4741 5380 -384 214 147 0 0 chr12 30631959 30631993 -113650496 + (TG)n Simple_repeat Simple_repeat 1 34 0 7128 55 2 0 chr12 30632494 30633898 -113648591 + L1PA7 LINE L1 4736 6141 -13 912 109 31 109 chr12 30634670 30634827 -113647662 - L1MA3 LINE L1 0 7724 7556 201 74 0 0 chr12 30634827 30634854 -113647635 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1902 153 0 0 chr12 30634859 30635134 -113647355 - AluSx SINE Alu -37 275 1 912 109 31 109 chr12 30635134 30635199 -113647290 - L1MA3 LINE L1 -172 7552 7514 1545 176 96 33 chr12 30635199 30635272 -113647217 - MSTA LTR MaLR 0 428 361 2003 141 28 0 chr12 30635272 30635562 -113646927 + AluSx SINE Alu 6 303 -9 1545 176 96 33 chr12 30635562 30635885 -113646604 - MSTA LTR MaLR -67 361 7 8334 172 71 2 chr12 30635888 30637433 -113645056 - MSTA-int LTR MaLR 0 1651 1 2415 166 31 5 chr12 30637433 30637850 -113644639 - MSTA LTR MaLR 0 428 1 19697 165 29 11 chr12 30637850 30638492 -113643997 - L1MA3 LINE L1 -206 7518 6889 7644 23 5 0 chr12 30638492 30640090 -113642399 + L1PA2 LINE L1 4553 6154 -1 19697 165 29 11 chr12 30640090 30642294 -113640195 - L1MA3 LINE L1 -835 6889 4725 2388 87 3 0 chr12 30642294 30642603 -113639886 + AluY SINE Alu 1 310 -1 19697 165 29 11 chr12 30642603 30647052 -113635437 - L1MA3 LINE L1 -2999 4725 83 2063 158 3 0 chr12 30647052 30647363 -113635126 + AluSx SINE Alu 1 312 0 19697 165 29 11 chr12 30647363 30647436 -113635053 - L1MA3 LINE L1 -7641 83 13 634 293 120 13 chr12 30649101 30649458 -113633031 + L1ME4a LINE L1 5501 5901 -220 1597 168 72 26 chr12 30649458 30649803 -113632686 + MER46B DNA MER2_type 1 236 0 634 293 120 13 chr12 30649803 30649821 -113632668 + L1ME4a LINE L1 5901 5916 -205 1058 244 171 21 chr12 30649893 30650412 -113632077 - MLT2F LTR ERVL 0 663 19 591 280 151 0 chr12 30650652 30650838 -113631651 - MIR SINE MIR -42 220 7 2132 79 25 4 chr12 30650978 30651257 -113631232 - AluY SINE Alu -13 298 14 535 206 22 3 chr12 30651300 30651451 -113631038 - LTR37A LTR ERV1 -2 424 291 193 233 0 0 chr12 30651807 30651850 -113630639 + MIR3 SINE MIR 163 205 -3 22 35 0 0 chr12 30652289 30652318 -113630171 + AT_rich Low_complexity Low_complexity 1 29 0 3248 159 24 28 chr12 30652326 30652998 -113629491 - L1MA9 LINE L1 0 6312 5644 38879 59 2 3 chr12 30653878 30660037 -113622452 + L1PA5 LINE L1 1 6154 0 3220 31 3 0 chr12 30660037 30660419 -113622070 + L1PA5 LINE L1 5770 6153 -1 227 122 100 22 chr12 30660439 30660529 -113621960 - MER63 DNA MER1_type -96 965 869 2469 93 0 0 chr12 30660553 30660864 -113621625 + AluY SINE Alu 1 311 0 650 267 28 0 chr12 30660908 30661088 -113621401 - MIR SINE MIR -8 254 70 279 313 62 62 chr12 30661242 30661418 -113621071 + L2 LINE L2 2555 2730 -584 335 78 20 0 chr12 30661540 30661591 -113620898 + (GA)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chr12 30662194 30662215 -113620274 + AT_rich Low_complexity Low_complexity 1 21 0 2231 96 24 0 chr12 30662710 30663003 -113619486 + AluSx SINE Alu 1 300 -12 1871 141 170 32 chr12 30663100 30663476 -113619013 + MSTA LTR MaLR 1 428 0 616 340 86 56 chr12 30664043 30664487 -113618002 + L2 LINE L2 2811 3267 -5 246 352 74 43 chr12 30664900 30665062 -113617427 + L2 LINE L2 3101 3267 -5 1256 227 35 27 chr12 30665869 30666239 -113616250 - MER93b LTR ERV1 0 373 1 322 190 38 0 chr12 30666240 30666319 -113616170 - MER65-int LTR ERV1 -395 7142 7061 549 313 10 0 chr12 30666436 30666628 -113615861 - MER65-int LTR ERV1 -536 7001 6808 553 250 73 26 chr12 30666676 30666882 -113615607 - MER65-int LTR ERV1 -252 4684 3777 2531 182 54 19 chr12 30666897 30667485 -113615004 - MER65-int LTR ERV1 -603 4333 3725 250 267 168 0 chr12 30667711 30667812 -113614677 + L2 LINE L2 3193 3310 -3 470 242 13 60 chr12 30667925 30668074 -113614415 - MIR SINE MIR -101 161 20 239 209 45 15 chr12 30668856 30668923 -113613566 - LTR67 LTR ERVL 0 557 489 242 341 90 12 chr12 30669722 30669889 -113612600 + L2 LINE L2 1913 2092 -1222 235 232 29 14 chr12 30670370 30670439 -113612050 + L3 LINE CR1 654 723 -854 1086 314 52 77 chr12 30670515 30670660 -113611829 + L3 LINE CR1 879 1026 -551 2231 119 0 19 chr12 30670660 30670970 -113611519 + AluSx SINE Alu 1 304 -8 1086 314 52 77 chr12 30670970 30671420 -113611069 + L3 LINE CR1 1026 1459 -118 332 312 0 40 chr12 30671535 30671660 -113610829 - L2 LINE L2 -14 3299 3180 402 345 36 36 chr12 30671672 30671866 -113610623 + MER91A DNA MER1_type 1 194 -2 754 295 183 25 chr12 30671868 30672318 -113610171 - L2 LINE L2 -140 3173 2491 279 276 20 20 chr12 30672323 30672421 -113610068 - MLT1K LTR MaLR -81 507 410 1944 144 19 22 chr12 30672474 30672787 -113609702 + AluJo SINE Alu 1 312 0 1890 188 78 37 chr12 30673170 30673271 -113609218 - MLT1D LTR MaLR 0 505 410 1864 146 168 8 chr12 30673271 30673640 -113608849 + MSTA LTR MaLR 1 428 0 1890 188 78 37 chr12 30673640 30674023 -113608466 - MLT1D LTR MaLR -95 410 1 2106 113 3 0 chr12 30674858 30675186 -113607303 - AluSx SINE Alu 0 329 1 818 261 17 6 chr12 30676279 30676459 -113606030 - MER5A DNA MER1_type 0 189 8 753 318 98 19 chr12 30676613 30676991 -113605498 + L2 LINE L2 2902 3309 -4 2354 78 16 16 chr12 30677020 30677326 -113605163 - AluSg SINE Alu -3 307 2 1029 274 81 58 chr12 30677633 30678273 -113604216 - L2 LINE L2 -1 3312 2669 225 229 21 0 chr12 30678381 30678429 -113604060 - L2 LINE L2 -5 3267 3219 241 255 0 85 chr12 30679586 30679680 -113602809 + MIR SINE MIR 32 117 -145 818 259 44 0 chr12 30679693 30679898 -113602591 + MIR SINE MIR 15 228 -34 259 297 131 35 chr12 30680169 30680314 -113602175 + MIR SINE MIR 48 206 -56 209 317 93 58 chr12 30681199 30681404 -113601085 + L3b LINE CR1 1132 1343 -240 263 212 45 15 chr12 30681935 30682001 -113600488 - MLT1J2 LTR MaLR -39 411 344 233 227 40 13 chr12 30682039 30682114 -113600375 - MLT1J2 LTR MaLR -307 143 67 2102 223 82 13 chr12 30682168 30682714 -113599775 - MLT1E LTR MaLR 0 593 10 509 320 33 13 chr12 30682726 30682879 -113599610 - MIR SINE MIR -104 158 3 282 335 87 60 chr12 30682946 30683212 -113599277 - L2 LINE L2 -588 2726 2454 661 306 215 10 chr12 30683246 30683642 -113598847 + L2 LINE L2 2837 3313 0 246 378 39 17 chr12 30683729 30683909 -113598580 - L2 LINE L2 -2418 896 713 333 242 40 40 chr12 30684108 30684207 -113598282 - MIR SINE MIR -82 180 82 257 190 0 52 chr12 30684374 30684432 -113598057 - L2 LINE L2 -1 3312 3258 44 35 0 0 chr12 30684497 30684555 -113597934 + AT_rich Low_complexity Low_complexity 1 58 0 2108 146 0 0 chr12 30686076 30686370 -113596119 - AluSx SINE Alu -18 294 1 2693 170 22 4 chr12 30686381 30686881 -113595608 - L1PB4 LINE L1 0 6156 5648 299 292 108 33 chr12 30686881 30687001 -113595488 - MIR SINE MIR -114 148 20 200 189 0 0 chr12 30688185 30688222 -113594267 + (CAATT)n Simple_repeat Simple_repeat 3 39 0 2363 134 54 66 chr12 30689889 30690183 -113592306 - MER4B LTR ERV1 0 779 483 5380 136 34 54 chr12 30690183 30691276 -113591213 - MER11C LTR ERVK 0 1071 1 2363 134 54 66 chr12 30691276 30691526 -113590963 - MER4B LTR ERV1 -296 483 66 1937 156 0 3 chr12 30691526 30691836 -113590653 + AluSx SINE Alu 3 311 0 2363 134 54 66 chr12 30691836 30691902 -113590587 - MER4B LTR ERV1 -713 66 1 450 285 13 6 chr12 30693020 30693178 -113589311 + HAL1b LINE L1 381 539 -809 256 225 28 0 chr12 30693283 30693354 -113589135 + (TATG)n Simple_repeat Simple_repeat 4 76 0 4476 130 119 1 chr12 30693390 30694129 -113588360 - LTR12 LTR ERV1 0 826 1 668 231 30 50 chr12 30694289 30694588 -113587901 - pTR5 LTR ERV1 -1405 1033 741 1364 195 274 21 chr12 30694874 30695484 -113587005 - LTR50 LTR ERVL -31 764 1 973 286 33 0 chr12 30695583 30695946 -113586543 - L1ME3A LINE L1 -313 5857 5483 1953 256 72 68 chr12 30696106 30696187 -113586302 + L2 LINE L2 2272 2351 -962 1648 71 0 0 chr12 30696187 30696383 -113586106 + AluSc SINE Alu 97 292 -17 1953 256 72 68 chr12 30696383 30696837 -113585652 + L2 LINE L2 2351 2816 -497 2320 97 3 0 chr12 30696837 30697136 -113585353 - AluSg SINE Alu -10 300 1 1953 256 72 68 chr12 30697136 30697474 -113585015 + L2 LINE L2 2816 3151 -162 1206 240 42 35 chr12 30697486 30697919 -113584570 - HsTC2 DNA Tc2 -5 1893 1282 303 203 65 65 chr12 30697906 30698044 -113584445 - HsTC2 DNA Tc2 -1747 151 14 * 532 248 0 16 chr12 30698053 30698182 -113584307 + L2 LINE L2 3153 3279 -34 234 91 0 0 chr12 30698274 30698307 -113584182 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 657 219 0 0 chr12 30698751 30698874 -113583615 - FLAM_A SINE Alu -10 123 1 363 98 0 0 chr12 30699724 30699785 -113582704 + (TG)n Simple_repeat Simple_repeat 2 62 0 27 29 0 0 chr12 30699919 30699953 -113582536 + AT_rich Low_complexity Low_complexity 1 34 0 1313 205 124 54 chr12 30700194 30700564 -113581925 - MSTD LTR MaLR 0 396 1 6819 209 73 43 chr12 30700564 30702246 -113580243 - MSTD-int LTR MaLR 0 1735 4 1567 227 67 8 chr12 30702250 30702624 -113579865 - MSTD LTR MaLR 0 396 1 289 345 134 18 chr12 30705149 30705320 -113577169 + MIR SINE MIR 53 243 -19 235 132 0 0 chr12 30705320 30705358 -113577131 + U3 snRNA snRNA 1 38 -179 26 30 0 0 chr12 30705469 30705502 -113576987 + AT_rich Low_complexity Low_complexity 1 33 0 2738 107 13 2 chr12 30705502 30705896 -113576593 - L1PA15 LINE L1 0 6165 5768 418 246 24 24 chr12 30706036 30706162 -113576327 - LTR67 LTR ERVL 0 557 432 255 316 126 0 chr12 30706716 30706811 -113575678 + L2 LINE L2 3160 3266 -6 2411 77 0 0 chr12 30708557 30708854 -113573635 - AluY SINE Alu -14 297 1 28 29 0 0 chr12 30709037 30709072 -113573417 + AT_rich Low_complexity Low_complexity 1 35 0 207 250 0 19 chr12 30710222 30710274 -113572215 + MER5A DNA MER1_type 45 95 -94 287 50 0 0 chr12 30710609 30710649 -113571840 - L1MA9 LINE L1 -41 6271 6232 337 180 16 0 chr12 30710654 30710715 -113571774 + Tigger5 DNA MER2_type 8 69 -2254 370 241 0 0 chr12 30710720 30710799 -113571690 - Tigger5 DNA MER2_type -3 2320 2242 * 406 205 0 12 chr12 30710789 30710872 -113571617 + Tigger5 DNA MER2_type 2242 2323 0 653 246 39 26 chr12 30710884 30711116 -113571373 - L1MA9 LINE L1 -89 6223 5989 213 327 0 0 chr12 30711128 30711180 -113571309 + polypyrimidine Low_complexity Low_complexity 3 54 0 231 118 0 0 chr12 30711320 30711354 -113571135 + L2 LINE L2 3271 3304 -9 2013 253 61 67 chr12 30711404 30712324 -113570165 + HAL1 LINE L1 863 1778 -729 1809 116 9 55 chr12 30712324 30712606 -113569883 + L1PA16 LINE L1 5853 6119 -47 2436 48 3 0 chr12 30712606 30712900 -113569589 - AluY SINE Alu -12 299 5 1809 116 9 55 chr12 30712900 30712946 -113569543 + L1PA16 LINE L1 6119 6166 0 2013 253 61 67 chr12 30712946 30713107 -113569382 + HAL1 LINE L1 1778 1938 -569 365 147 15 0 chr12 30713232 30713300 -113569189 + HAL1 LINE L1 2321 2389 -118 626 291 25 20 chr12 30713556 30713759 -113568730 - MIR SINE MIR -6 256 53 1773 219 23 92 chr12 30713922 30714629 -113567860 - L1MC4 LINE L1 -571 7471 6814 40658 52 3 1 chr12 30715343 30721514 -113560975 + L1PA5 LINE L1 11 6196 0 24 53 0 0 chr12 30721525 30721563 -113560926 + AT_rich Low_complexity Low_complexity 1 38 0 364 236 160 25 chr12 30721966 30722203 -113560286 + L1M4 LINE L1 3048 3316 -2830 296 127 18 0 chr12 30723575 30723630 -113558859 + GA-rich Low_complexity Low_complexity 1 56 0 5455 122 24 7 chr12 30724602 30725636 -113556853 - L1PA13 LINE L1 -4 6159 5119 613 294 117 58 chr12 30726771 30727358 -113555131 + L2 LINE L2 2716 3313 0 4426 193 30 26 chr12 30727640 30729545 -113552944 + L1MA10 LINE L1 4411 6333 -1 495 286 199 23 chr12 30730406 30730707 -113551782 - L3 LINE CR1 -6 1571 1218 21 71 0 0 chr12 30730898 30730940 -113551549 + AT_rich Low_complexity Low_complexity 1 42 0 498 264 135 0 chr12 30731141 30731289 -113551200 + MIR SINE MIR 47 214 -48 1108 140 19 0 chr12 30731289 30731446 -113551043 - FRAM SINE Alu -19 157 1 2277 139 47 75 chr12 30731737 30731749 -113550740 + L1MA7 LINE L1 5773 5784 -507 216 0 0 0 chr12 30731749 30731773 -113550716 + (CA)n Simple_repeat Simple_repeat 2 25 0 2277 139 47 75 chr12 30731773 30732054 -113550435 + L1MA7 LINE L1 5784 6047 -244 1718 138 3 84 chr12 30732054 30732387 -113550102 - AluJb SINE Alu -2 310 5 2277 139 47 75 chr12 30732387 30732624 -113549865 + L1MA7 LINE L1 6047 6289 -2 1974 148 3 3 chr12 30732876 30733173 -113549316 - AluSx SINE Alu -15 297 1 227 276 129 35 chr12 30734381 30734551 -113547938 + L2 LINE L2 2660 2845 -469 321 297 52 71 chr12 30734669 30734824 -113547665 + L2 LINE L2 3117 3268 -4 27 29 0 0 chr12 30736879 30736913 -113545576 + AT_rich Low_complexity Low_complexity 1 34 0 690 209 50 0 chr12 30737014 30737153 -113545336 + MER21B LTR ERV1 14 159 -704 268 204 19 0 chr12 30737304 30737358 -113545131 + Tigger5 DNA MER2_type 1 55 -2268 285 155 35 0 chr12 30737414 30737472 -113545017 - Tigger5 DNA MER2_type -2235 88 29 8495 47 1 0 chr12 30737474 30738439 -113544050 - LTR5 LTR ERVK -3 966 1 370 202 0 22 chr12 30738487 30738576 -113543913 + Tigger5 DNA MER2_type 2237 2323 0 1105 188 10 0 chr12 30738587 30738795 -113543694 + MER2 DNA MER2_type 1 210 -135 3014 77 36 36 chr12 30738860 30739303 -113543186 - MLT2A1 LTR ERVL -1 443 1 17398 68 6 1 chr12 30739303 30741587 -113540902 - HERVL-A1 LTR ERVL 0 5654 3361 292 280 0 0 chr12 30741934 30742009 -113540480 - MIR SINE MIR -115 147 73 26 30 0 0 chr12 30742494 30742527 -113539962 + AT_rich Low_complexity Low_complexity 1 33 0 213 359 0 0 chr12 30743531 30743595 -113538894 - L2 LINE L2 -12 3260 3197 21 0 0 0 chr12 30743606 30743627 -113538862 + AT_rich Low_complexity Low_complexity 1 21 0 465 295 88 33 chr12 30743684 30744047 -113538442 + L1MCa LINE L1 20 402 -6024 446 215 0 48 chr12 30745014 30745067 -113537422 - MER63 DNA MER1_type -37 1651 1597 1895 127 81 19 chr12 30745067 30745390 -113537099 - MER61A LTR ERV1 0 343 1 446 215 0 48 chr12 30745390 30745452 -113537037 - MER63 DNA MER1_type -91 1597 687 1035 259 49 40 chr12 30745756 30746203 -113536286 + MLT1C LTR MaLR 1 451 -16 2012 205 93 23 chr12 30747195 30747787 -113534702 - MLT1E2 LTR MaLR -2 624 4 1716 173 14 78 chr12 30747839 30748330 -113534159 + L1M2 LINE L1 5167 5630 -682 2035 337 109 23 chr12 30748609 30749848 -113532641 + L3 LINE CR1 185 1529 -48 22 35 0 0 chr12 30750600 30750629 -113531860 + AT_rich Low_complexity Low_complexity 1 29 0 245 308 47 47 chr12 30751028 30751135 -113531354 - MIR SINE MIR -79 129 23 323 321 203 8 chr12 30752253 30752585 -113529904 - L2 LINE L2 0 3313 2876 1312 206 67 50 chr12 30753923 30754282 -113528207 - MLT1A1 LTR MaLR 0 365 1 224 328 37 74 chr12 30755223 30755412 -113527077 - MIR SINE MIR -1 261 80 226 130 78 143 chr12 30755526 30755559 -113526930 + MER5A DNA MER1_type 41 75 -114 4477 48 12 0 chr12 30755559 30756119 -113526370 + L1PA7 LINE L1 5588 6154 0 226 130 78 143 chr12 30756119 30756162 -113526327 + MER5A DNA MER1_type 75 112 -77 1972 118 0 14 chr12 30756166 30756500 -113525989 - AluY SINE Alu 0 330 1 219 224 69 17 chr12 30756775 30756833 -113525656 - L2 LINE L2 -4 3268 3208 1969 115 6 88 chr12 30757261 30757601 -113524888 + AluSx SINE Alu 1 312 0 425 187 131 24 chr12 30758183 30758329 -113524160 - L1ME2 LINE L1 -3 6331 6012 206 229 0 0 chr12 30758815 30758863 -113523626 - MIR SINE MIR 0 262 215 720 242 45 54 chr12 30758881 30759078 -113523411 + MIR SINE MIR 12 208 -54 6866 25 4 1 chr12 30759078 30759892 -113522597 + L1PA3 LINE L1 5340 6155 0 720 242 45 54 chr12 30759892 30759917 -113522572 + MIR SINE MIR 208 232 -30 5223 211 37 28 chr12 30760383 30762469 -113520020 + L1MB8 LINE L1 4040 6162 -16 1872 280 33 23 chr12 30762489 30763388 -113519101 + L1M4 LINE L1 2248 3155 -2991 224 219 16 31 chr12 30763426 30763490 -113518999 + MIR SINE MIR 200 262 0 451 302 58 0 chr12 30763663 30763852 -113518637 - MIR SINE MIR -6 256 57 334 324 74 6 chr12 30765890 30766066 -113516423 + MER5A DNA MER1_type 2 189 0 207 265 73 0 chr12 30766329 30766397 -113516092 - MIR SINE MIR -138 124 52 505 139 0 0 chr12 30767320 30767399 -113515090 - L1MA2 LINE L1 -14 6290 6212 2066 199 13 55 chr12 30767527 30768055 -113514434 - L1MB8 LINE L1 -6 6172 5667 1942 141 6 28 chr12 30768354 30768673 -113513816 - AluSx SINE Alu 0 312 1 234 0 0 0 chr12 30770334 30770360 -113512129 + (TG)n Simple_repeat Simple_repeat 1 26 0 995 192 29 0 chr12 30771027 30771235 -113511254 + L1PA16 LINE L1 5947 6160 -6 187 326 114 8 chr12 30772205 30772337 -113510152 + MIR3 SINE MIR 3 148 -60 292 319 99 0 chr12 30772538 30772629 -113509860 + MIR SINE MIR 29 128 -80 228 86 0 0 chr12 30773763 30773798 -113508691 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr12 30774642 30774663 -113507826 + AT_rich Low_complexity Low_complexity 1 21 0 334 182 0 15 chr12 30775120 30775186 -113507303 - MER103 DNA DNA -98 68 4 264 30 0 0 chr12 30776882 30776915 -113505574 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 32 57 0 0 chr12 30777441 30777494 -113504995 + AT_rich Low_complexity Low_complexity 1 53 0 288 305 86 9 chr12 30778428 30778533 -113503956 - MIR SINE MIR -50 212 100 22 56 0 0 chr12 30778535 30778571 -113503918 + AT_rich Low_complexity Low_complexity 1 36 0 1905 158 117 28 chr12 30778852 30779245 -113503244 + MSTA LTR MaLR 1 428 0 21 36 0 0 chr12 30779520 30779548 -113502941 + AT_rich Low_complexity Low_complexity 1 28 0 4815 39 2 0 chr12 30780286 30780873 -113501616 - L1P LINE L1 -1189 4957 4370 * 14572 33 11 1 chr12 30780857 30782652 -113499837 + L1P LINE L1 2535 4348 -1798 2013 138 7 0 chr12 30784196 30784492 -113497997 - AluSx SINE Alu -12 300 3 207 0 0 0 chr12 30785304 30785327 -113497162 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2108 114 31 44 chr12 30786393 30786519 -113495970 - THE1A LTR MaLR 0 355 229 1528 88 0 37 chr12 30786519 30786736 -113495753 - AluSc SINE Alu -4 305 97 2108 114 31 44 chr12 30786736 30786969 -113495520 - THE1A LTR MaLR -126 229 1 7533 28 0 0 chr12 30787363 30788285 -113494204 - L1PA4 LINE L1 0 6155 5235 508 274 84 71 chr12 30788378 30788820 -113493669 + MLT1G1 LTR MaLR 113 589 -6 280 213 107 25 chr12 30790143 30790265 -113492224 - L1ME4a LINE L1 -17 6104 5973 903 202 12 0 chr12 30790401 30790574 -113491915 - L1MC1 LINE L1 0 6333 6159 1358 261 67 13 chr12 30790574 30790950 -113491539 + MSTD LTR MaLR 1 396 0 2682 167 59 25 chr12 30790951 30791509 -113490980 - L1MC1 LINE L1 -171 6162 5586 1336 194 14 48 chr12 30791523 30791812 -113490677 - MSTB2 LTR MaLR 0 457 179 2730 224 62 16 chr12 30791812 30792638 -113489851 - L1MC1 LINE L1 -784 5362 4499 1653 173 24 32 chr12 30792638 30792725 -113489764 - MER44D DNA MER2_type -1883 608 522 2055 149 43 0 chr12 30792725 30793074 -113489415 - MER47A DNA MER2_type -1 365 2 1653 173 24 32 chr12 30793074 30793327 -113489162 - MER44D DNA MER2_type -1969 522 1 1291 267 21 16 chr12 30793327 30793754 -113488735 - L1MC1 LINE L1 -1645 4501 4073 3373 79 7 5 chr12 30793927 30794370 -113488119 + MLT2A1 LTR ERVL 1 444 0 1333 209 90 8 chr12 30794742 30795010 -113487479 - AluJo SINE Alu -12 290 1 210 286 63 0 chr12 30796587 30796650 -113485839 - L2 LINE L2 -3 3310 3244 1003 249 39 50 chr12 30796660 30796997 -113485492 - MER87 LTR ERV1 0 541 209 201 355 95 41 chr12 30797162 30797500 -113484989 - L2 LINE L2 -90 3182 2827 1439 190 116 52 chr12 30797708 30798155 -113484334 - MLT1D LTR MaLR -29 476 1 246 229 16 0 chr12 30798617 30798678 -113483811 + HsTC2 DNA Tc2 1 62 -1836 258 32 0 0 chr12 30798708 30798739 -113483750 + (TC)n Simple_repeat Simple_repeat 2 32 0 1796 224 41 20 chr12 30798901 30799391 -113483098 + MLT1D LTR MaLR 6 505 0 279 79 0 0 chr12 30799653 30799691 -113482798 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 1484 134 47 83 chr12 30799699 30799975 -113482514 - AluSx SINE Alu -44 268 3 190 326 81 12 chr12 30800285 30800371 -113482118 - MIR SINE MIR -14 248 157 1946 189 43 28 chr12 30800626 30801049 -113481440 + MSTB1 LTR MaLR 4 432 0 264 358 21 0 chr12 30802067 30802162 -113480327 + L2 LINE L2 2963 3059 -213 23 0 0 0 chr12 30802918 30802941 -113479548 + AT_rich Low_complexity Low_complexity 1 23 0 1409 98 23 5 chr12 30802953 30803168 -113479321 - L1MA1 LINE L1 -9 6293 6075 266 313 38 69 chr12 30803349 30803480 -113479009 - MIR SINE MIR -124 138 12 402 286 29 29 chr12 30803971 30804111 -113478378 + L2 LINE L2 3174 3313 0 2420 162 37 46 chr12 30804457 30804939 -113477550 - MLT2B2 LTR ERVL -35 480 3 647 252 82 24 chr12 30805002 30805208 -113477281 - MIR SINE MIR -24 238 21 192 304 18 0 chr12 30805685 30805741 -113476748 + MIR SINE MIR 49 105 -157 259 188 47 0 chr12 30806661 30806725 -113475764 - MIR SINE MIR -93 169 103 216 184 0 0 chr12 30807666 30807704 -113474785 + (ATG)n Simple_repeat Simple_repeat 3 40 0 1204 317 74 54 chr12 30807758 30808141 -113474348 - MER115 DNA AcHobo -9 684 281 2166 136 21 21 chr12 30808141 30808516 -113473973 + THE1C LTR MaLR 1 375 0 1204 317 74 54 chr12 30808516 30808794 -113473695 - MER115 DNA AcHobo -412 281 10 409 243 171 44 chr12 30808801 30808982 -113473507 - MIR SINE MIR -54 208 5 1824 176 67 11 chr12 30809033 30809408 -113473081 + MSTD LTR MaLR 1 396 0 351 243 90 9 chr12 30810513 30810624 -113471865 + L1MC4 LINE L1 7596 7715 -327 351 208 46 66 chr12 30810711 30810847 -113471642 + L1MC4 LINE L1 7881 7994 -1 8887 191 33 44 chr12 30811281 30813490 -113468999 + L1MDa LINE L1 18 2200 -4340 214 184 0 0 chr12 30813627 30813665 -113468824 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 264 111 0 0 chr12 30814543 30814588 -113467901 + (CA)n Simple_repeat Simple_repeat 2 46 0 201 292 97 56 chr12 30816407 30816479 -113466010 - MIR SINE MIR -166 96 22 211 248 143 29 chr12 30816686 30816791 -113465698 + L2 LINE L2 3188 3304 -9 588 194 0 0 chr12 30817265 30817363 -113465126 - FLAM_A SINE Alu -16 126 29 188 362 0 0 chr12 30817612 30817670 -113464819 - MIR SINE MIR -142 120 63 517 278 106 9 chr12 30818406 30818873 -113463616 + MLT1G1 LTR MaLR 1 595 0 22 0 0 0 chr12 30818903 30818925 -113463564 + AT_rich Low_complexity Low_complexity 1 22 0 1460 185 40 25 chr12 30819467 30819792 -113462697 + MLT1A2 LTR MaLR 45 374 0 186 176 0 0 chr12 30821364 30821415 -113461074 + (CA)n Simple_repeat Simple_repeat 2 52 0 364 280 24 0 chr12 30821434 30821559 -113460930 + (CA)n Simple_repeat Simple_repeat 1 128 0 354 349 6 0 chr12 30821608 30821783 -113460706 + (CA)n Simple_repeat Simple_repeat 1 176 0 25 0 0 0 chr12 30821948 30821973 -113460516 + AT_rich Low_complexity Low_complexity 1 25 0 197 218 127 0 chr12 30822577 30822632 -113459857 + L2 LINE L2 2994 3055 -217 27 0 0 0 chr12 30823668 30823695 -113458794 + AT_rich Low_complexity Low_complexity 1 27 0 635 275 87 29 chr12 30823758 30824109 -113458380 - MER57A LTR ERV1 -6 397 43 1863 86 92 67 chr12 30824133 30824533 -113457956 + LTR14B LTR ERVK 6 608 0 343 167 40 79 chr12 30824940 30825066 -113457423 - L1MB5 LINE L1 -1 6173 6053 23 0 0 0 chr12 30825804 30825827 -113456662 + AT_rich Low_complexity Low_complexity 1 23 0 1369 142 4 16 chr12 30826053 30826307 -113456182 - Tigger4(Zombi) DNA MER2_type 0 2731 2481 851 137 7 34 chr12 30826308 30826454 -113456035 + FLAM_C SINE Alu 1 142 -1 4383 126 3 3 chr12 30826454 30827153 -113455336 - Tigger4(Zombi) DNA MER2_type -244 2487 1789 * 7929 131 32 66 chr12 30827151 30828674 -113453815 - Tigger4(Zombi) DNA MER2_type -1259 1472 1 658 91 27 0 chr12 30829139 30829249 -113453240 + L1MCa LINE L1 663 775 -5651 2963 130 26 2 chr12 30829259 30829788 -113452701 + L1MCa LINE L1 857 1398 -5028 1198 213 49 55 chr12 30829791 30829954 -113452535 - MER50 LTR ERV1 0 734 572 2508 71 0 0 chr12 30829954 30830264 -113452225 + AluY SINE Alu 1 310 -1 1198 213 49 55 chr12 30830264 30830447 -113452042 - MER50 LTR ERV1 -162 572 390 187 231 58 19 chr12 30830755 30830807 -113451682 - MIR SINE MIR -70 192 139 231 286 0 14 chr12 30831766 30831836 -113450653 + MIR3 SINE MIR 137 205 -3 367 376 25 6 chr12 30831978 30832140 -113450349 - MIR SINE MIR -78 184 20 558 143 76 0 chr12 30832422 30832541 -113449948 - L1P LINE L1 -877 5269 5142 3800 142 70 21 chr12 30832541 30833146 -113449343 + L1PA16 LINE L1 5391 6039 -127 2299 115 126 5 chr12 30833146 30833528 -113448961 - MSTA LTR MaLR 0 428 1 3800 142 70 21 chr12 30833528 30833663 -113448826 + L1PA16 LINE L1 6039 6166 0 837 298 81 30 chr12 30834260 30834629 -113447860 - L2 LINE L2 0 3313 2926 1279 230 12 33 chr12 30834821 30835152 -113447337 - MLT2D LTR ERVL 0 414 91 1792 177 11 34 chr12 30836444 30836658 -113445831 + MER7A DNA MER2_type 1 218 -2820 2443 106 43 3 chr12 30836658 30837006 -113445483 - THE1B LTR MaLR -2 362 1 9405 131 63 10 chr12 30837006 30838507 -113443982 - THE1B-int LTR MaLR 0 1580 1 2471 132 3 3 chr12 30838507 30838871 -113443618 - THE1B LTR MaLR 0 364 1 1792 177 11 34 chr12 30838871 30839010 -113443479 + MER7A DNA MER2_type 215 346 0 189 0 0 0 chr12 30839385 30839406 -113443083 + (A)n Simple_repeat Simple_repeat 1 21 0 1658 176 36 15 chr12 30839999 30840328 -113442161 + MLT2C1 LTR ERVL 1 336 -61 324 0 0 0 chr12 30840328 30840364 -113442125 + (TC)n Simple_repeat Simple_repeat 1 36 0 252 0 0 0 chr12 30840363 30840391 -113442098 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 27 29 0 0 chr12 30841420 30841454 -113441035 + AT_rich Low_complexity Low_complexity 1 34 0 630 328 92 10 chr12 30841523 30841816 -113440673 - L3b LINE CR1 -87 1496 1180 601 196 18 0 chr12 30841830 30841942 -113440547 - FLAM_C SINE Alu -22 121 8 2268 69 0 0 chr12 30842811 30843100 -113439389 - L1PA7 LINE L1 -15 6139 5851 357 62 0 0 chr12 30843302 30843350 -113439139 + (TG)n Simple_repeat Simple_repeat 2 49 0 198 103 0 0 chr12 30843757 30843786 -113438703 + (T)n Simple_repeat Simple_repeat 1 29 0 743 190 36 41 chr12 30844402 30844597 -113437892 + L1ME LINE L1 5392 5585 -579 2443 278 172 25 chr12 30844597 30845814 -113436675 - L2 LINE L2 -711 2603 1209 480 133 0 0 chr12 30847180 30847263 -113435226 + (TGGA)n Simple_repeat Simple_repeat 3 85 0 461 240 47 0 chr12 30848291 30848441 -113434048 + L1M4 LINE L1 4464 4620 -1526 577 211 56 0 chr12 30848597 30848739 -113433750 - MLT1B LTR MaLR 0 390 241 304 39 20 20 chr12 30848742 30848793 -113433696 + (TTTTA)n Simple_repeat Simple_repeat 4 54 0 26048 33 7 4 chr12 30848793 30852914 -113429575 - L1PA3 LINE L1 -16 6139 2006 853 270 194 8 chr12 30853003 30853438 -113429051 + L2 LINE L2 2801 3311 -2 2131 141 0 6 chr12 30854174 30854486 -113428003 - AluSx SINE Alu -2 310 1 692 281 12 6 chr12 30854896 30855063 -113427426 + MER5A DNA MER1_type 1 168 -21 1003 294 10 17 chr12 30855153 30855445 -113427044 - L2 LINE L2 -5 3308 3019 1305 193 130 25 chr12 30855969 30856322 -113426167 + MLT1B LTR MaLR 1 390 0 27 0 0 0 chr12 30856697 30856724 -113425765 + AT_rich Low_complexity Low_complexity 1 27 0 218 279 0 0 chr12 30856895 30856938 -113425551 - L2 LINE L2 -256 3057 3015 195 335 126 16 chr12 30857264 30857446 -113425043 - L2 LINE L2 -1729 1585 1384 204 329 26 0 chr12 30857699 30857775 -113424714 + L3 LINE CR1 1476 1553 -24 22 56 0 0 chr12 30858030 30858066 -113424423 + AT_rich Low_complexity Low_complexity 1 36 0 1495 236 76 39 chr12 30858490 30859160 -113423329 + L1MC5 LINE L1 7232 7926 -35 957 185 0 0 chr12 30859417 30859595 -113422894 + MLT2B2 LTR ERVL 6 183 -332 999 190 10 77 chr12 30859707 30860119 -113422370 + MLT2B2 LTR ERVL 186 515 0 195 42 0 0 chr12 30860311 30860335 -113422154 + (T)n Simple_repeat Simple_repeat 1 24 0 289 200 45 2 chr12 30861383 30861449 -113421040 + AluSq/x SINE Alu 47 107 -195 374 232 65 77 chr12 30861740 30861895 -113420594 - MIR3 SINE MIR -40 168 16 190 194 0 0 chr12 30862705 30862741 -113419748 + MER5A DNA MER1_type 55 90 -99 556 179 229 0 chr12 30862748 30862888 -113419601 + MER5A DNA MER1_type 18 189 0 203 237 0 51 chr12 30863025 30863084 -113419405 - MIR SINE MIR -10 252 197 282 313 54 45 chr12 30863084 30863135 -113419354 - L2 LINE L2 -14 3256 3146 1648 177 31 6 chr12 30863143 30863465 -113419024 - MER58B DNA MER1_type 0 341 12 839 304 84 56 chr12 30864168 30864730 -113417759 - L2 LINE L2 -267 3005 2423 243 242 34 0 chr12 30865458 30865523 -113416966 + MIR SINE MIR 80 140 -68 2047 133 10 0 chr12 30866788 30867081 -113415408 - AluSc SINE Alu -11 298 3 5319 80 104 4 chr12 30867326 30868075 -113414414 - LTR12 LTR ERV1 0 826 3 2511 88 95 2 chr12 30868075 30868474 -113414015 + LTR7 LTR ERV1 13 448 -2 12453 206 83 68 chr12 30868476 30873547 -113408942 + HERVH LTR ERV1 1 5149 -2564 1291 124 18 5 chr12 30873548 30873765 -113408724 + HERVH LTR ERV1 5600 5819 -1894 2180 87 46 44 chr12 30873765 30874154 -113408335 + HERVH LTR ERV1 7324 7713 0 3003 87 4 32 chr12 30874154 30874615 -113407874 + LTR7 LTR ERV1 1 448 -2 1473 221 65 15 chr12 30874782 30875185 -113407304 - MER50 LTR ERV1 -311 423 1 474 167 133 0 chr12 30875185 30875305 -113407184 + L1MCa LINE L1 1423 1558 -4868 2275 110 0 3 chr12 30875339 30875647 -113406842 + AluSc SINE Alu 1 307 -2 204 216 0 0 chr12 30875662 30875700 -113406789 + (CATA)n Simple_repeat Simple_repeat 1 38 0 1340 190 123 46 chr12 30875729 30876080 -113406409 - MLT2B1 LTR ERVL -25 529 103 3257 246 31 12 chr12 30876087 30877216 -113405273 + L1MCa LINE L1 2388 3498 -2928 1023 171 42 73 chr12 30877286 30877862 -113404627 + MER4C LTR ERV1 1 430 -35 2102 138 0 0 chr12 30878047 30878343 -113404146 + AluSx SINE Alu 2 297 -15 597 259 18 29 chr12 30878683 30878853 -113403636 + MIR SINE MIR 21 188 -74 1244 73 28 0 chr12 30878916 30879094 -113403395 - L1PA8 LINE L1 -226 5928 5746 1692 81 0 0 chr12 30879094 30879307 -113403182 + L1PA8 LINE L1 5948 6170 -2 2066 130 30 3 chr12 30880297 30880596 -113401893 - AluSg SINE Alu -3 307 1 335 265 92 0 chr12 30881688 30881786 -113400703 - MIR SINE MIR -30 232 126 243 392 82 10 chr12 30882688 30882882 -113399607 + L2 LINE L2 2926 3133 -139 314 277 124 15 chr12 30882970 30883107 -113399382 - MIR SINE MIR -76 186 35 202 317 57 24 chr12 30883200 30883323 -113399166 + L2 LINE L2 3141 3267 -5 338 269 43 64 chr12 30884375 30884516 -113397973 - MIR3 SINE MIR -69 139 2 371 307 131 11 chr12 30884651 30884827 -113397662 - MIR SINE MIR -17 245 49 251 348 68 38 chr12 30885419 30885655 -113396834 - L2 LINE L2 -357 2957 2715 181 283 192 50 chr12 30886149 30886269 -113396220 - MIR SINE MIR -75 187 51 833 233 19 27 chr12 30886603 30886865 -113395624 - MIR SINE MIR 0 262 3 201 319 9 53 chr12 30887083 30887196 -113395293 - L2 LINE L2 -4 3309 3202 685 278 52 4 chr12 30887239 30887487 -113395002 - MIR SINE MIR 0 262 3 1082 216 42 86 chr12 30887803 30888234 -113394255 + L1ME1 LINE L1 5723 6134 -32 548 198 8 8 chr12 30888239 30888365 -113394124 + L1MC4a LINE L1 7569 7694 -114 475 218 113 85 chr12 30888812 30889060 -113393429 + L1MEc LINE L1 146 400 -5996 22 0 0 0 chr12 30889160 30889182 -113393307 + AT_rich Low_complexity Low_complexity 1 22 0 2042 158 27 32 chr12 30889862 30890415 -113392074 - MLT2A2 LTR ERVL 0 554 8 232 319 186 9 chr12 30891370 30891483 -113391006 + MER91A DNA MER1_type 42 174 -22 3478 234 63 35 chr12 30892746 30894883 -113387606 - L1ME2 LINE L1 -119 6045 3843 268 325 84 44 chr12 30895043 30895292 -113387197 + L2 LINE L2 1855 2113 -1201 479 201 58 7 chr12 30895423 30895577 -113386912 + L1M4 LINE L1 4322 4483 -1663 271 331 37 25 chr12 30896992 30897155 -113385334 + L2 LINE L2 2656 2820 -494 193 265 0 128 chr12 30897161 30897263 -113385226 + L2 LINE L2 3133 3221 -51 203 161 0 0 chr12 30897273 30897304 -113385185 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 192 152 0 0 chr12 30898299 30898332 -113384157 + CT-rich Low_complexity Low_complexity 2 34 0 195 100 0 0 chr12 30898345 30898375 -113384114 + (TTG)n Simple_repeat Simple_repeat 1 30 0 957 102 24 0 chr12 30899057 30899184 -113383305 + AluY SINE Alu 3 132 -179 234 321 100 14 chr12 30899746 30899775 -113382714 - L2 LINE L2 0 3272 3247 2305 75 0 0 chr12 30899775 30900079 -113382410 + AluY SINE Alu 3 306 0 234 321 100 14 chr12 30900079 30900188 -113382301 - L2 LINE L2 -25 3247 3121 189 256 0 0 chr12 30900465 30900504 -113381985 - MIR3 SINE MIR -28 180 142 478 254 33 103 chr12 30901266 30901479 -113381010 + MIR SINE MIR 31 228 -34 23 0 0 0 chr12 30902585 30902608 -113379881 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr12 30903096 30903121 -113379368 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 372 277 56 38 chr12 30903483 30903696 -113378793 + Charlie2 DNA MER1_type 107 323 -2459 448 194 164 67 chr12 30903745 30904013 -113378476 + Charlie2 DNA MER1_type 1903 2196 -666 923 243 74 8 chr12 30904066 30904309 -113378180 - MIR SINE MIR -3 259 1 464 226 87 20 chr12 30904349 30904601 -113377888 + Charlie2 DNA MER1_type 2356 2624 -238 856 178 6 6 chr12 30904702 30904859 -113377630 - FRAM SINE Alu -9 157 1 8798 232 43 37 chr12 30904880 30907507 -113374982 - L1ME1 LINE L1 -5 6230 3598 2200 142 52 32 chr12 30907507 30907950 -113374539 - L1MA8 LINE L1 -5 6286 5835 8798 232 43 37 chr12 30907950 30909512 -113372977 - L1ME1 LINE L1 -2637 3598 2047 204 247 91 26 chr12 30911115 30911192 -113371297 - MIR3 SINE MIR -25 183 102 182 345 18 0 chr12 30911285 30911340 -113371149 + MER5A DNA MER1_type 54 109 -80 495 287 208 10 chr12 30911427 30911629 -113370860 + MIR SINE MIR 21 262 0 2157 72 45 0 chr12 30911674 30911964 -113370525 - AluY SINE Alu -8 303 1 2424 183 38 35 chr12 30912645 30912963 -113369526 - MER90 LTR ERV1 0 614 292 2446 82 0 7 chr12 30912963 30913266 -113369223 + AluSp SINE Alu 1 301 -12 2424 183 38 35 chr12 30913266 30913527 -113368962 - MER90 LTR ERV1 -322 292 33 476 326 38 5 chr12 30913729 30913913 -113368576 + LTR33 LTR ERVL 3 192 -329 7236 100 179 79 chr12 30914021 30915590 -113366899 - pTR5 LTR ERV1 0 2438 375 330 173 29 0 chr12 30916823 30916927 -113365562 + (TA)n Simple_repeat Simple_repeat 1 107 0 2311 107 10 0 chr12 30916927 30917236 -113365253 - AluSq SINE Alu 0 313 2 2674 132 18 81 chr12 30917305 30917798 -113364691 - L1PA16 LINE L1 -2 6164 5703 2182 131 3 0 chr12 30917981 30918278 -113364211 - AluSx SINE Alu -14 298 1 195 42 0 0 chr12 30918401 30918425 -113364064 + (CAA)n Simple_repeat Simple_repeat 3 26 0 6001 35 0 0 chr12 30919262 30919924 -113362565 - L1PA5 LINE L1 0 6154 5493 333 230 16 8 chr12 30920217 30920310 -113362179 + MIR SINE MIR 100 192 -70 255 295 170 17 chr12 30920697 30920860 -113361629 + MIR SINE MIR 16 196 -66 473 273 63 0 chr12 30920956 30921099 -113361390 - MIR SINE MIR -74 188 37 561 276 140 19 chr12 30923051 30923265 -113359224 + MIR SINE MIR 15 254 -8 1444 181 47 34 chr12 30923273 30923594 -113358895 + MLT2C1 LTR ERVL 5 329 -68 1644 161 46 7 chr12 30923607 30923887 -113358602 + AluJb SINE Alu 1 291 -21 1137 138 69 0 chr12 30923898 30924087 -113358402 + MER82 DNA MER2_type 2 203 -450 4169 101 14 3 chr12 30924266 30924851 -113357638 - L1MA1 LINE L1 0 6302 5712 242 306 0 0 chr12 30924874 30924946 -113357543 - Tigger2 DNA MER2_type -1604 1114 1043 234 0 0 0 chr12 30925061 30925087 -113357402 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2107 203 30 15 chr12 30925232 30925636 -113356853 + MER82 DNA MER2_type 199 608 -45 1408 154 12 20 chr12 30925637 30925890 -113356599 + LTR1 LTR ERV1 1 251 -534 271 224 0 0 chr12 30925881 30925939 -113356550 + LTR1 LTR ERV1 201 258 -527 * 3417 129 10 48 chr12 30925929 30926533 -113355956 + LTR1 LTR ERV1 205 785 0 243 196 78 0 chr12 30926533 30926578 -113355911 + MER82 DNA MER2_type 602 650 -3 1358 307 118 6 chr12 30927763 30928833 -113353656 - L2 LINE L2 -6 3307 2098 955 228 70 21 chr12 30928837 30929265 -113353224 + MLT1F LTR MaLR 2 533 -9 1186 311 65 8 chr12 30929335 30929856 -113352633 - L2 LINE L2 -1945 1369 819 449 247 220 63 chr12 30929902 30929966 -113352523 - MIR SINE MIR -3 259 206 2129 144 0 0 chr12 30929966 30930272 -113352217 + AluSx SINE Alu 1 306 -6 449 247 220 63 chr12 30930272 30930430 -113352059 - MIR SINE MIR -56 206 2 33 0 0 0 chr12 30931471 30931504 -113350985 + AT_rich Low_complexity Low_complexity 1 33 0 337 331 30 24 chr12 30932281 30932450 -113350039 + MIR SINE MIR 28 197 -65 388 241 121 109 chr12 30932652 30932854 -113349635 - MIR SINE MIR 0 262 55 2407 94 0 0 chr12 30932854 30933152 -113349337 - AluSc SINE Alu -11 298 1 388 241 121 109 chr12 30933152 30933206 -113349283 - MIR SINE MIR -207 55 3 5860 152 10 12 chr12 30935908 30937464 -113345025 + L1PA15 LINE L1 4594 6144 -21 1086 87 13 0 chr12 30938641 30938790 -113343699 - AluSc SINE Alu -6 303 153 1203 51 38 25 chr12 30939187 30939344 -113343145 - AluSc SINE Alu -150 159 1 658 280 16 10 chr12 30939351 30939544 -113342945 - MIR SINE MIR -56 206 13 195 42 0 0 chr12 30939573 30939597 -113342892 + (A)n Simple_repeat Simple_repeat 1 24 0 2441 143 55 55 chr12 30939605 30939865 -113342624 + Tigger2a DNA MER2_type 1 263 -2445 1850 100 36 0 chr12 30939865 30940116 -113342373 + AluY SINE Alu 35 294 -17 2441 143 55 55 chr12 30940116 30940289 -113342200 + Tigger2a DNA MER2_type 262 434 0 43 0 0 0 chr12 30941880 30941923 -113340566 + AT_rich Low_complexity Low_complexity 1 43 0 1582 167 28 28 chr12 30942041 30942328 -113340161 - AluJo SINE Alu -24 288 2 1145 268 158 79 chr12 30942344 30943378 -113339111 + L1MCc LINE L1 144 1258 -5165 3108 251 90 29 chr12 30943387 30944526 -113337963 + L1MCc LINE L1 1610 2842 -4099 2690 156 39 0 chr12 30944526 30944936 -113337553 + MSTB LTR MaLR 1 426 0 3108 251 90 29 chr12 30944936 30945423 -113337066 + L1MCc LINE L1 2842 3298 -3643 26 0 0 0 chr12 30946059 30946085 -113336404 + AT_rich Low_complexity Low_complexity 1 26 0 2324 121 116 10 chr12 30946199 30946586 -113335903 - MSTA LTR MaLR 0 428 1 322 247 11 34 chr12 30947025 30947114 -113335375 + L2 LINE L2 3227 3313 0 1535 194 20 78 chr12 30947772 30948169 -113334320 + MLT1A2 LTR MaLR 1 374 0 488 343 73 5 chr12 30948242 30948446 -113334043 - MIR SINE MIR -40 222 5 337 343 36 0 chr12 30948834 30949000 -113333489 + MIR SINE MIR 67 238 -24 352 354 82 5 chr12 30949059 30949254 -113333235 + L2 LINE L2 3101 3310 -3 723 98 20 0 chr12 30949642 30949744 -113332745 - L1MC1 LINE L1 -3 6330 6227 314 273 59 80 chr12 30950475 30950662 -113331827 - MARNA DNA Mariner -330 256 74 291 258 93 119 chr12 30951354 30951441 -113331048 + LTR16A LTR ERVL 16 104 -346 988 191 0 0 chr12 30951441 30951598 -113330891 + FRAM SINE Alu 1 157 -9 291 258 93 119 chr12 30951598 30951704 -113330785 + LTR16A LTR ERVL 104 204 -246 241 259 74 0 chr12 30951712 30951793 -113330696 + LTR16A LTR ERVL 364 450 0 1940 270 54 59 chr12 30951795 30952521 -113329968 + HERV16 LTR ERVL 3 724 -4272 1986 273 61 24 chr12 30952531 30953767 -113328722 + HERV16 LTR ERVL 832 2224 -2772 2242 327 73 33 chr12 30953790 30954112 -113328377 + ERVL LTR ERVL 3742 4050 -946 2475 68 0 0 chr12 30954112 30954408 -113328081 + AluY SINE Alu 1 296 -15 2242 327 73 33 chr12 30954408 30954916 -113327573 + ERVL LTR ERVL 4050 4165 -831 1812 133 13 40 chr12 30954916 30955218 -113327271 - AluSg1 SINE Alu -15 294 1 2242 327 73 33 chr12 30955218 30955992 -113326497 + ERVL LTR ERVL 4165 4906 -90 2065 130 0 10 chr12 30956060 30956367 -113326122 + AluSg SINE Alu 1 304 -6 1299 236 65 40 chr12 30956394 30956793 -113325696 + LTR16A LTR ERVL 22 430 -20 1658 239 59 20 chr12 30958642 30959110 -113323379 - MLT1H LTR MaLR 0 549 19 21 36 0 0 chr12 30959171 30959199 -113323290 + AT_rich Low_complexity Low_complexity 1 28 0 21 95 0 0 chr12 30959366 30959429 -113323060 + AT_rich Low_complexity Low_complexity 1 63 0 549 216 62 56 chr12 30959752 30959914 -113322575 + MLT1G LTR MaLR 428 590 0 4377 131 174 20 chr12 30961258 30962256 -113320233 + pTR5 LTR ERV1 738 2024 -414 382 224 10 0 chr12 30962257 30962355 -113320134 + LTR30 LTR ERV1 544 642 -80 2878 13 0 0 chr12 30962372 30962683 -113319806 - AluYa5 SINE Alu 0 311 1 1534 104 5 5 chr12 30962687 30962908 -113319581 + pTR5 LTR ERV1 172 392 -2046 294 188 135 62 chr12 30963335 30963431 -113319058 + L2 LINE L2 3170 3272 0 2317 216 132 51 chr12 30964228 30964769 -113317720 - Charlie2a DNA MER1_type -1 2861 2365 1673 180 80 37 chr12 30964769 30965119 -113317370 - MLT1A1 LTR MaLR 0 365 1 2317 216 132 51 chr12 30965119 30965258 -113317231 - Charlie2a DNA MER1_type -497 2365 2239 3893 132 0 4 chr12 30965258 30965787 -113316702 + MER1A DNA MER1_type 1 527 0 2317 216 132 51 chr12 30965787 30966121 -113316368 - Charlie2a DNA MER1_type -623 2239 1764 325 138 0 35 chr12 30966162 30966220 -113316269 - LTR40a LTR ERVL -373 146 91 815 189 11 28 chr12 30966286 30966466 -113316023 - Charlie2a DNA MER1_type -1204 1658 1482 890 259 128 54 chr12 30966494 30966922 -113315567 - Charlie2a DNA MER1_type -2310 472 13 1894 89 67 0 chr12 30967680 30967949 -113314540 - L1MA2 LINE L1 0 6304 6018 609 111 32 56 chr12 30967954 30968080 -113314409 - L1MA2 LINE L1 -204 6100 5978 648 238 41 54 chr12 30969880 30970174 -113312315 + L1ME4a LINE L1 5580 5869 -252 295 212 122 108 chr12 30970291 30970569 -113311920 + L1ME4a LINE L1 5837 6118 -3 564 307 135 41 chr12 30971184 30971620 -113310869 + L3 LINE CR1 117 593 -984 246 62 0 0 chr12 30971747 30971779 -113310710 + (CA)n Simple_repeat Simple_repeat 2 33 0 661 328 71 35 chr12 30971781 30972244 -113310245 + L2 LINE L2 2450 2929 -385 1098 264 113 43 chr12 30972432 30972902 -113309587 - L2 LINE L2 -2 3311 2809 222 292 15 0 chr12 30973354 30973419 -113309070 + L2 LINE L2 3248 3313 0 253 319 11 11 chr12 30973754 30973848 -113308641 + GA-rich Low_complexity Low_complexity 3 96 0 226 189 0 0 chr12 30974226 30974263 -113308226 + MER53 DNA DNA 5 41 -148 1246 274 55 21 chr12 30975761 30976180 -113306309 + LTR16A LTR ERVL 16 448 -2 2378 284 43 15 chr12 30976182 30976929 -113305560 + HERV16 LTR ERVL 1 768 -4228 1562 329 43 11 chr12 30976941 30977634 -113304855 + HERV16 LTR ERVL 2826 3540 -2224 1899 202 18 5 chr12 30977635 30978026 -113304463 - MER63C DNA MER1_type -16 914 519 708 215 133 0 chr12 30978101 30978236 -113304253 - AluJb SINE Alu -17 295 143 8222 68 9 9 chr12 30978236 30979293 -113303196 + MER11C LTR ERVK 1 1057 -14 1946 193 23 23 chr12 30979389 30979824 -113302665 - MER63C DNA MER1_type -446 484 50 371 333 60 31 chr12 30980046 30980463 -113302026 + HERV16 LTR ERVL 3910 4290 -706 466 312 46 21 chr12 30980765 30981136 -113301353 + HERV16 LTR ERVL 4537 5310 -175 611 320 63 40 chr12 30981289 30981736 -113300753 + LTR16B LTR ERVL 8 464 0 797 269 137 55 chr12 30981736 30982173 -113300316 + L1ME2 LINE L1 4843 5326 -820 1613 222 122 16 chr12 30982173 30982624 -113299865 - MLT1D LTR MaLR -2 503 5 797 269 137 55 chr12 30982624 30982676 -113299813 + L1ME2 LINE L1 5326 5372 -774 283 342 116 13 chr12 30983919 30984074 -113298415 + MIR3 SINE MIR 17 187 -21 272 327 101 42 chr12 30986054 30986271 -113296218 + L2 LINE L2 2851 3080 -192 1288 215 21 58 chr12 30986853 30987122 -113295367 + L1ME2 LINE L1 5793 6046 -118 2750 202 80 79 chr12 30987122 30987947 -113294542 + LTR1B LTR ERV1 1 826 0 1288 215 21 58 chr12 30987947 30988053 -113294436 + L1ME2 LINE L1 6046 6154 -10 375 60 0 0 chr12 30988200 30988250 -113294239 + (TG)n Simple_repeat Simple_repeat 1 50 0 1348 213 54 57 chr12 30988608 30988997 -113293492 - MLT1B LTR MaLR -1 389 2 200 286 176 11 chr12 30989033 30989124 -113293365 - L2 LINE L2 -1 3312 3207 541 234 55 45 chr12 30990036 30990237 -113292252 - MIR SINE MIR -47 215 13 2165 122 0 0 chr12 30990617 30990912 -113291577 - AluSx SINE Alu -17 295 1 570 272 69 0 chr12 30991614 30991787 -113290702 - MIR SINE MIR -73 189 5 915 161 0 0 chr12 30991818 30991998 -113290491 + (CTATA)n Simple_repeat Simple_repeat 1 180 0 228 189 40 0 chr12 30992023 30992097 -113290392 + (CTATA)n Simple_repeat Simple_repeat 2 78 0 4045 109 13 30 chr12 30994706 30995169 -113287320 - L1PA16 LINE L1 -104 6062 5610 1840 137 3 82 chr12 30995169 30995497 -113286992 - AluSx SINE Alu -10 302 1 4045 109 13 30 chr12 30995497 30995637 -113286852 - L1PA16 LINE L1 -556 5610 5469 2194 118 0 0 chr12 30997051 30997348 -113285141 - AluSx SINE Alu -15 297 1 25 31 0 0 chr12 30998139 30998171 -113284318 + AT_rich Low_complexity Low_complexity 1 32 0 354 173 12 25 chr12 30998477 30998558 -113283931 - MER116 DNA Mariner 0 80 1 828 215 123 53 chr12 30999862 31000194 -113282295 - LTR37A LTR ERV1 -123 303 14 21 0 0 0 chr12 31000367 31000388 -113282101 + AT_rich Low_complexity Low_complexity 1 21 0 321 353 17 9 chr12 31000459 31000575 -113281914 - MER89-int LTR ERV1 -4374 273 157 491 296 96 21 chr12 31000784 31001064 -113281425 - MER89-int LTR ERV1 -4428 2373 2073 758 241 97 97 chr12 31001381 31001846 -113280643 - L1M4 LINE L1 -929 5217 4753 325 194 15 0 chr12 31001987 31002054 -113280435 + LTR60 LTR ERV1 1 68 -518 1161 231 62 19 chr12 31002171 31002492 -113279997 + LTR43 LTR ERV1 131 465 -137 500 268 134 8 chr12 31002975 31003341 -113279148 + L1ME4a LINE L1 5710 6121 0 375 23 0 0 chr12 31004449 31004493 -113277996 + (CA)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr12 31005260 31005286 -113277203 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 31006149 31006170 -113276319 + GC_rich Low_complexity Low_complexity 1 21 0 1227 238 82 76 chr12 31006792 31007304 -113275185 - LTR40a LTR ERVL 0 519 5 527 277 123 45 chr12 31007895 31008035 -113274454 + L2 LINE L2 2815 2943 -370 2451 77 0 0 chr12 31008035 31008333 -113274156 - AluSg SINE Alu -12 298 1 527 277 123 45 chr12 31008333 31008524 -113273965 + L2 LINE L2 2943 3172 -141 2794 231 83 46 chr12 31008896 31009718 -113272771 - MER21B LTR ERV1 -11 852 1 3611 186 20 50 chr12 31009926 31010725 -113271764 - MER21B-int LTR ERV1 -56 4135 3361 3289 201 11 16 chr12 31010725 31011393 -113271096 - MER21B-int LTR ERV1 -772 3419 2756 194 303 61 53 chr12 31012007 31012139 -113270350 - MER5B DNA MER1_type -43 135 3 739 227 127 23 chr12 31012148 31012368 -113270121 - MIR SINE MIR -2 260 18 2507 70 0 0 chr12 31012826 31013127 -113269362 - AluY SINE Alu -10 301 1 429 267 167 56 chr12 31013297 31013567 -113268922 - L2 LINE L2 -86 3227 2928 303 237 219 26 chr12 31013606 31013720 -113268769 - L2 LINE L2 -250 3063 2928 309 239 229 28 chr12 31013760 31013869 -113268620 - L2 LINE L2 -251 3062 2932 1701 140 181 27 chr12 31013870 31014235 -113268254 + MSTA LTR MaLR 1 421 -7 397 300 122 19 chr12 31014242 31014505 -113267984 - L2 LINE L2 -374 2940 2651 2416 80 0 0 chr12 31014510 31014799 -113267690 + AluSq SINE Alu 11 299 -14 1579 157 130 58 chr12 31014799 31015201 -113267288 + LTR54B LTR ERV1 14 453 -45 1554 160 0 69 chr12 31015201 31015519 -113266970 + AluJb SINE Alu 1 296 -16 1579 157 130 58 chr12 31015519 31015562 -113266927 + LTR54B LTR ERV1 453 491 -7 2549 53 0 3 chr12 31015816 31016120 -113266369 - AluY SINE Alu 0 311 9 961 202 83 138 chr12 31016971 31017486 -113265003 + LTR45B LTR ERV1 2 488 -1 236 312 156 0 chr12 31018228 31018305 -113264184 - L2 LINE L2 0 3272 3184 274 125 0 78 chr12 31018423 31018487 -113264002 - L1PB4 LINE L1 -1 6155 6097 368 262 9 0 chr12 31018715 31018822 -113263667 - LTR43 LTR ERV1 -306 296 189 1360 148 49 0 chr12 31019026 31019270 -113263219 - L1PB4 LINE L1 -50 6106 5851 520 306 121 19 chr12 31019456 31019828 -113262661 - Charlie8 DNA MER1_type -1896 521 112 198 71 0 0 chr12 31019985 31020013 -113262476 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 203 272 141 0 chr12 31020025 31020117 -113262372 - L2 LINE L2 -16 3297 3193 3830 115 0 6 chr12 31020408 31020938 -113261551 - MER1A DNA MER1_type 0 527 1 1096 182 63 20 chr12 31021420 31021722 -113260767 + MER33 DNA MER1_type 10 324 0 27 29 0 0 chr12 31022523 31022557 -113259932 + AT_rich Low_complexity Low_complexity 1 34 0 3406 141 87 13 chr12 31022994 31024019 -113258470 + Tigger3b DNA MER2_type 40 1232 0 22 0 0 0 chr12 31024192 31024214 -113258275 + AT_rich Low_complexity Low_complexity 1 22 0 315 169 0 0 chr12 31024476 31024547 -113257942 + (TA)n Simple_repeat Simple_repeat 2 72 0 732 251 92 53 chr12 31024752 31025167 -113257322 + Charlie2 DNA MER1_type 44 474 -2308 1630 213 73 55 chr12 31025196 31026094 -113256395 + Charlie2a DNA MER1_type 1482 2362 -500 2328 99 0 0 chr12 31026094 31026388 -113256101 + AluY SINE Alu 3 296 -15 1630 213 73 55 chr12 31026388 31026531 -113255958 + Charlie2a DNA MER1_type 2362 2501 -361 8049 77 5 9 chr12 31026531 31027607 -113254882 + MER11C LTR ERVK 1 1071 0 1630 213 73 55 chr12 31027607 31027874 -113254615 + Charlie2a DNA MER1_type 2501 2845 -17 25 0 0 0 chr12 31028481 31028506 -113253983 + AT_rich Low_complexity Low_complexity 1 25 0 2117 138 33 30 chr12 31028516 31028879 -113253610 + THE1B LTR MaLR 1 364 0 199 211 211 32 chr12 31029035 31029158 -113253331 - L2 LINE L2 -11 3302 3158 24 67 0 0 chr12 31030241 31030286 -113252203 + AT_rich Low_complexity Low_complexity 1 45 0 183 258 106 0 chr12 31030863 31030929 -113251560 - MIR SINE MIR -109 153 81 5225 117 16 41 chr12 31031097 31032102 -113250387 + L1PB3 LINE L1 5176 6154 0 38 22 0 0 chr12 31032638 31032683 -113249806 + AT_rich Low_complexity Low_complexity 1 45 0 2074 139 2 42 chr12 31032684 31032953 -113249536 - L1MA7 LINE L1 -2 6289 6040 1961 158 45 20 chr12 31032953 31033308 -113249181 + THE1B LTR MaLR 1 364 0 2074 139 2 42 chr12 31033308 31033442 -113249047 - L1MA7 LINE L1 -251 6040 5902 1295 156 40 8 chr12 31033454 31033704 -113248785 + L1M2 LINE L1 5373 5630 -661 417 374 58 0 chr12 31035057 31035196 -113247293 - L2 LINE L2 0 3272 3126 3539 133 9 52 chr12 31035284 31035914 -113246575 - LTR26 LTR ERV1 0 603 1 660 291 35 6 chr12 31035960 31036132 -113246357 - MIR SINE MIR -77 185 9 2182 168 48 30 chr12 31036236 31036552 -113245937 + LTR24 LTR ERV1 1 329 -138 2213 141 0 0 chr12 31036552 31036864 -113245625 + AluSx SINE Alu 1 312 0 2182 168 48 30 chr12 31036864 31037006 -113245483 + LTR24 LTR ERV1 329 467 0 967 258 51 110 chr12 31037066 31037656 -113244833 + MLT1G LTR MaLR 20 574 -16 207 220 0 0 chr12 31037706 31037756 -113244733 + (CA)n Simple_repeat Simple_repeat 1 50 0 2148 117 7 26 chr12 31038155 31038464 -113244025 + AluSx SINE Alu 1 303 -9 483 305 135 13 chr12 31038621 31039080 -113243409 - L1ME2 LINE L1 -212 5952 5438 646 252 40 97 chr12 31039085 31039509 -113242980 + HAL1 LINE L1 2070 2469 -38 342 0 0 0 chr12 31039718 31039756 -113242733 + (TG)n Simple_repeat Simple_repeat 2 39 0 255 277 31 0 chr12 31039838 31039903 -113242586 + CT-rich Low_complexity Low_complexity 4 70 0 550 287 146 53 chr12 31040364 31041122 -113241367 - L2 LINE L2 0 3272 2360 309 307 18 9 chr12 31041291 31041405 -113241084 + L2 LINE L2 3153 3267 -5 220 303 90 0 chr12 31041668 31041757 -113240732 - MIR SINE MIR -7 255 159 427 172 56 141 chr12 31041757 31041955 -113240534 - MER53 DNA DNA -8 181 1 285 319 51 22 chr12 31041957 31042095 -113240394 - MIR SINE MIR -93 169 28 208 190 10 130 chr12 31042653 31042753 -113239736 + MIR SINE MIR 118 205 -57 465 241 46 9 chr12 31043454 31043562 -113238927 - L2 LINE L2 -3 3310 3199 712 270 67 30 chr12 31044214 31044714 -113237775 - MLT1G LTR MaLR -2 588 1 4799 196 106 16 chr12 31046143 31046721 -113235768 + Charlie1a DNA MER1_type 1 526 -2235 1796 194 64 80 chr12 31046721 31047284 -113235205 + MLT2B3 LTR ERVL 1 554 0 4799 196 106 16 chr12 31047284 31048041 -113234448 + Charlie1a DNA MER1_type 526 1455 0 235 160 11 43 chr12 31048383 31048477 -113234012 + CT-rich Low_complexity Low_complexity 2 92 0 276 30 0 0 chr12 31049168 31049201 -113233288 + (CA)n Simple_repeat Simple_repeat 1 33 0 237 193 48 48 chr12 31049353 31049436 -113233053 - MIR SINE MIR -21 241 159 546 292 42 54 chr12 31049444 31049643 -113232846 + MIR SINE MIR 10 207 -55 2150 104 24 3 chr12 31049643 31049940 -113232549 + AluY SINE Alu 1 303 -8 546 292 42 54 chr12 31049940 31049980 -113232509 + MIR SINE MIR 207 246 -16 368 278 31 0 chr12 31049983 31050080 -113232409 - MIR SINE MIR -106 156 57 23 33 0 0 chr12 31050605 31050635 -113231854 + AT_rich Low_complexity Low_complexity 1 30 0 1777 175 0 0 chr12 31050635 31050920 -113231569 - AluJo SINE Alu -27 285 1 414 298 50 35 chr12 31051780 31051921 -113230568 + MIR3 SINE MIR 5 147 -61 1128 240 96 38 chr12 31052049 31052415 -113230074 + MSTD LTR MaLR 1 387 -9 240 35 0 0 chr12 31052421 31052450 -113230039 + (CA)n Simple_repeat Simple_repeat 2 30 0 4008 194 32 98 chr12 31052454 31053673 -113228816 + L1MC3 LINE L1 6630 7768 -17 2522 232 90 9 chr12 31053668 31053964 -113228525 + L1ME2 LINE L1 4631 4902 -1262 * 180 0 0 0 chr12 31053964 31053984 -113228505 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2522 232 90 9 chr12 31053984 31055099 -113227390 + L1ME2 LINE L1 4902 6162 -2 401 266 18 0 chr12 31055144 31055253 -113227236 - MIR SINE MIR 0 262 152 225 0 0 0 chr12 31056583 31056608 -113225881 + (A)n Simple_repeat Simple_repeat 1 25 0 2108 141 0 7 chr12 31057017 31057323 -113225166 + AluJb SINE Alu 1 304 -8 2062 214 81 14 chr12 31057791 31058336 -113224153 + MER77 LTR ERV1 41 597 -8 1670 175 45 0 chr12 31059488 31059780 -113222709 + AluJb SINE Alu 1 305 -7 693 201 14 126 chr12 31060335 31060629 -113221860 - LTR41 LTR ERVL -7 766 506 689 200 50 11 chr12 31060795 31060975 -113221514 - LTR41 LTR ERVL -586 187 1 5706 152 22 19 chr12 31061782 31064954 -113217535 + L1MA2 LINE L1 16 3178 -4545 784 172 23 0 chr12 31064954 31065082 -113217407 + FLAM_C SINE Alu 3 133 0 5706 152 22 19 chr12 31065082 31065380 -113217109 + L1MA2 LINE L1 3178 3474 -4249 297 0 0 0 chr12 31065380 31065413 -113217076 + (CA)n Simple_repeat Simple_repeat 2 34 0 5706 152 22 19 chr12 31065413 31067194 -113215295 + L1MA2 LINE L1 3474 5248 -2475 2663 102 32 0 chr12 31067194 31067538 -113214951 + THE1A LTR MaLR 1 355 0 11415 102 53 1 chr12 31067538 31069041 -113213448 + THE1A-int LTR MaLR 1 1580 0 2484 100 41 0 chr12 31069041 31069382 -113213107 + THE1A LTR MaLR 1 355 0 5706 152 22 19 chr12 31069382 31070181 -113212308 + L1MA2 LINE L1 5248 6043 -1680 2186 129 3 0 chr12 31070181 31070492 -113211997 + AluSx SINE Alu 1 312 0 5706 152 22 19 chr12 31070492 31071333 -113211156 + L1MA2 LINE L1 6043 6880 -843 425 162 0 27 chr12 31071333 31071407 -113211082 + L1PA8A LINE L1 6055 6126 -5 * 5706 118 16 5 chr12 31071404 31072238 -113210251 + L1MA2 LINE L1 6881 7723 0 5706 152 22 19 chr12 31071407 31072247 -113210242 + L1MA2 LINE L1 6880 7723 0 718 133 0 31 chr12 31072494 31072622 -113209867 - L1MA9 LINE L1 0 6312 6189 2257 102 0 10 chr12 31072971 31073285 -113209204 - AluSq SINE Alu -2 311 1 488 296 151 0 chr12 31073456 31073642 -113208847 - MIR SINE MIR -28 234 21 238 286 60 12 chr12 31073719 31073803 -113208686 + MIR3 SINE MIR 98 185 -23 2340 162 16 0 chr12 31076284 31076649 -113205840 - THE1C LTR MaLR -4 371 1 9631 116 38 67 chr12 31076657 31078274 -113204215 - THE1C-int LTR MaLR -8 1572 2 2303 156 36 0 chr12 31078275 31078635 -113203854 - THE1C LTR MaLR 0 375 3 402 280 126 43 chr12 31078881 31079061 -113203428 - L1ME3A LINE L1 -223 6016 5852 4640 140 79 59 chr12 31079061 31079946 -113202543 - MER4D LTR ERV1 0 903 1 402 280 126 43 chr12 31079946 31080320 -113202169 - L1ME3A LINE L1 -387 5852 5407 1065 261 129 21 chr12 31080336 31080769 -113201720 - L1ME2 LINE L1 -6 6158 5679 1397 268 80 9 chr12 31080774 31081236 -113201253 - L1ME3A LINE L1 -5455 941 447 884 235 201 7 chr12 31081260 31081549 -113200940 - L1ME3A LINE L1 -5992 404 60 321 237 66 66 chr12 31081585 31081737 -113200752 - Charlie2 DNA MER1_type -2466 316 165 2270 85 7 7 chr12 31081897 31082192 -113200297 - AluSc SINE Alu -14 295 1 2730 96 6 3 chr12 31083626 31083980 -113198509 + THE1A LTR MaLR 1 355 0 12147 103 5 11 chr12 31083980 31084400 -113198089 + THE1A-int LTR MaLR 1 422 -1158 2100 114 0 10 chr12 31084400 31084699 -113197790 + AluSg SINE Alu 1 296 -14 12147 103 5 11 chr12 31084699 31085865 -113196624 + THE1A-int LTR MaLR 422 1578 -2 2383 117 38 0 chr12 31085867 31086209 -113196280 + THE1A LTR MaLR 1 355 0 747 176 120 0 chr12 31087766 31087908 -113194581 + MER58B DNA MER1_type 181 339 -2 2684 217 60 107 chr12 31089103 31089293 -113193196 - L1MC5 LINE L1 -74 7887 7690 1584 147 41 44 chr12 31089293 31089586 -113192903 - AluJo SINE Alu -18 294 3 2684 217 60 107 chr12 31089586 31090660 -113191829 - L1MC5 LINE L1 -271 7690 6682 5617 196 61 18 chr12 31090680 31092846 -113189643 - L1MB7 LINE L1 -1 6183 3938 214 333 0 0 chr12 31092887 31092935 -113189554 - MIR SINE MIR -209 53 6 * 221 287 188 74 chr12 31092896 31093412 -113189077 + L2 LINE L2 2012 2586 -728 244 263 38 0 chr12 31093593 31093673 -113188816 - L1ME LINE L1 -275 5846 5764 707 232 147 0 chr12 31094207 31094405 -113188084 - LTR16A1 LTR ERVL -28 429 203 28616 53 5 5 chr12 31094530 31098892 -113183597 + L1PA5 LINE L1 1543 6432 -2 198 91 0 0 chr12 31098925 31098958 -113183531 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 237 171 146 85 chr12 31099068 31099150 -113183339 - L2 LINE L2 -4 3268 3182 569 286 0 20 chr12 31102000 31102147 -113180342 + MIR SINE MIR 8 151 -111 259 340 62 0 chr12 31102601 31102698 -113179791 + MIR3 SINE MIR 78 180 -28 199 306 41 51 chr12 31104568 31104666 -113177823 - MIR SINE MIR -106 156 60 417 191 32 63 chr12 31104666 31104792 -113177697 + L1ME4a LINE L1 5964 6085 -36 1536 197 14 37 chr12 31104905 31105200 -113177289 + AluJo SINE Alu 11 298 -14 2065 68 39 84 chr12 31105447 31105757 -113176732 - AluSg SINE Alu -14 296 1 278 284 29 64 chr12 31105940 31106144 -113176345 - L2 LINE L2 -179 3093 2897 2530 145 23 0 chr12 31106663 31107056 -113175433 + MER57A LTR ERV1 2 403 0 2667 196 24 2 chr12 31107756 31108406 -113174083 + L1P5 LINE L1 4799 5460 -696 274 27 27 0 chr12 31108410 31108447 -113174042 + L1PB4 LINE L1 5928 5965 -191 892 317 51 59 chr12 31108942 31109585 -113172904 - L2 LINE L2 -346 2968 2331 611 121 0 11 chr12 31111030 31111121 -113171368 - 5S rRNA rRNA -31 90 1 191 337 139 0 chr12 31111277 31111363 -113171126 + MIR SINE MIR 50 147 -61 2077 114 20 13 chr12 31111410 31111709 -113170780 + AluSp SINE Alu 1 301 -12 4247 124 16 31 chr12 31112205 31112890 -113169599 - MER4D LTR ERV1 -197 675 1 366 179 0 77 chr12 31112890 31112968 -113169521 + AluJo SINE Alu 81 152 -150 279 293 24 0 chr12 31113033 31113115 -113169374 + LTR35 LTR ERV1 46 129 -489 712 235 66 44 chr12 31113233 31113561 -113168928 + LTR35 LTR ERV1 350 614 -4 806 227 0 23 chr12 31113564 31113736 -113168753 + FRAM SINE Alu 1 40 0 225 193 126 42 chr12 31113877 31113996 -113168493 + L1ME4a LINE L1 5988 6116 -5 1380 167 13 0 chr12 31114287 31114520 -113167969 - AluJo SINE Alu -4 308 73 12927 183 25 15 chr12 31114531 31119172 -113163317 + L1PA12 LINE L1 1 6008 -1576 1599 224 83 13 chr12 31119191 31119451 -113163038 - MLT1C LTR MaLR -4 463 166 309 26 0 0 chr12 31119451 31119489 -113163000 + (TG)n Simple_repeat Simple_repeat 2 39 0 1599 224 83 13 chr12 31119489 31119612 -113162877 - MLT1C LTR MaLR -301 166 53 333 350 86 27 chr12 31119846 31120032 -113162457 + MIR SINE MIR 16 212 -50 339 200 133 0 chr12 31120565 31120655 -113161834 + MIR SINE MIR 73 174 -88 1118 186 95 113 chr12 31120655 31121025 -113161464 - MLT1B LTR MaLR 0 390 28 2015 129 25 0 chr12 31121038 31121343 -113161146 + AluSq SINE Alu 1 312 0 280 304 207 4 chr12 31121739 31122005 -113160484 + L2 LINE L2 2643 2962 -352 569 183 63 40 chr12 31122453 31122579 -113159910 + L2 LINE L2 3140 3268 -4 2382 190 66 0 chr12 31122601 31122740 -113159749 + L1MB3 LINE L1 5681 5809 -374 2840 16 0 0 chr12 31122740 31123051 -113159438 + AluY SINE Alu 1 311 0 2382 190 66 0 chr12 31123051 31123380 -113159109 + L1MB3 LINE L1 5809 6180 -3 402 264 214 11 chr12 31123763 31123941 -113158548 + MLT1H1 LTR MaLR 5 218 -377 458 249 90 48 chr12 31124053 31124242 -113158247 + MLT1H1 LTR MaLR 358 554 -1 214 182 18 73 chr12 31124501 31124556 -113157933 - L2 LINE L2 0 3313 3262 2181 98 0 3 chr12 31126992 31127277 -113155212 - AluSg SINE Alu -26 284 1 1964 253 80 30 chr12 31128245 31128810 -113153679 + MLT1E LTR MaLR 1 593 0 261 319 92 25 chr12 31129155 31129274 -113153215 - MER91A DNA MER1_type -69 127 1 302 222 0 16 chr12 31129421 31129484 -113153005 + L2 LINE L2 3237 3298 -15 260 236 0 0 chr12 31129806 31129861 -113152628 - L2 LINE L2 -332 2981 2927 427 231 175 6 chr12 31129906 31130066 -113152423 - LTR50 LTR ERVL -19 776 590 659 221 56 10 chr12 31130236 31130434 -113152055 - LTR41 LTR ERVL -575 220 1 9537 295 59 27 chr12 31130774 31132654 -113149835 - ERVL LTR ERVL -394 5370 3551 6728 143 98 26 chr12 31132654 31133846 -113148643 + MER52C LTR ERV1 1 1278 0 9537 295 59 27 chr12 31133846 31135505 -113146984 - ERVL LTR ERVL -2213 3551 1719 823 202 48 12 chr12 31135506 31135674 -113146815 - MER58B DNA MER1_type 0 341 168 334 312 25 13 chr12 31137512 31137669 -113144820 + Charlie2 DNA MER1_type 165 323 -2459 2253 263 122 9 chr12 31137669 31138470 -113144019 + L1ME3A LINE L1 45 936 -5460 1104 275 117 5 chr12 31138474 31138900 -113143589 + L1ME2 LINE L1 5672 6145 -19 515 299 89 54 chr12 31138931 31139380 -113143109 + L1ME3A LINE L1 5407 5839 -400 2080 128 0 7 chr12 31139380 31139685 -113142804 + AluSx SINE Alu 1 303 -9 1997 125 21 0 chr12 31139689 31139977 -113142512 + AluSx SINE Alu 3 296 -16 515 299 89 54 chr12 31139977 31140131 -113142358 + L1ME3A LINE L1 5841 6036 -203 2448 147 70 2 chr12 31141375 31141776 -113140713 - MSTA LTR MaLR 0 428 1 2632 40 3 0 chr12 31142940 31143241 -113139248 + L1PA4 LINE L1 5852 6153 -2 1654 136 4 12 chr12 31143595 31143853 -113138636 + AluSq SINE Alu 41 296 -17 493 278 183 6 chr12 31143990 31144170 -113138319 + MIR SINE MIR 23 234 -28 821 108 0 0 chr12 31144663 31144783 -113137706 + L1MA9 LINE L1 6189 6308 -4 241 146 0 36 chr12 31145581 31145636 -113136853 - L1M4 LINE L1 -1962 4184 4132 738 180 42 58 chr12 31145891 31146047 -113136442 + LTR41 LTR ERVL 2 156 -617 2035 77 0 33 chr12 31146047 31146319 -113136170 - AluY SINE Alu -12 299 37 738 180 42 58 chr12 31146319 31146351 -113136138 + LTR41 LTR ERVL 156 187 -586 863 187 14 126 chr12 31146517 31146811 -113135678 + LTR41 LTR ERVL 506 766 -7 2104 112 0 3 chr12 31147879 31148187 -113134302 + AluY SINE Alu 1 307 0 2179 222 76 17 chr12 31148908 31149434 -113133055 - MER77 LTR ERV1 -8 597 41 21 36 0 0 chr12 31150102 31150130 -113132359 + AT_rich Low_complexity Low_complexity 1 28 0 208 359 94 8 chr12 31150757 31150885 -113131604 - L2 LINE L2 -347 2967 2829 322 255 108 0 chr12 31151009 31151111 -113131378 + MIR SINE MIR 125 237 -25 21 0 0 0 chr12 31151557 31151578 -113130911 + AT_rich Low_complexity Low_complexity 1 21 0 463 232 36 0 chr12 31151706 31151818 -113130671 - MIR SINE MIR -63 199 84 3274 96 38 2 chr12 31151972 31152419 -113130070 + L1PA13 LINE L1 5699 6161 -2 3552 259 81 10 chr12 31153721 31154445 -113128044 - L1MD3 LINE L1 -70 7925 7083 2076 135 0 3 chr12 31154445 31154734 -113127755 - AluSx SINE Alu -24 288 1 3552 259 81 10 chr12 31154734 31155197 -113127292 - L1MD3 LINE L1 -912 7083 6654 23 0 0 0 chr12 31155229 31155252 -113127237 + GC_rich Low_complexity Low_complexity 1 23 0 385 268 31 0 chr12 31156532 31156629 -113125860 + MIR SINE MIR 57 156 -106 627 303 44 4 chr12 31156632 31156860 -113125629 - MIR SINE MIR -16 246 10 257 242 11 0 chr12 31157814 31157905 -113124584 + A-rich Low_complexity Low_complexity 2 93 0 1604 142 86 44 chr12 31158273 31158681 -113123808 - Charlie1a DNA MER1_type -34 1421 997 5714 21 0 6 chr12 31158681 31159336 -113123153 - L1PA2 LINE L1 0 6155 5538 3607 28 0 0 chr12 31159336 31159760 -113122729 + L1P LINE L1 4828 5251 -895 4054 186 114 19 chr12 31159760 31160099 -113122390 - Charlie1a DNA MER1_type -1754 1007 702 2180 181 39 100 chr12 31160099 31160689 -113121800 - MLT2B3 LTR ERVL 0 554 1 4054 186 114 19 chr12 31160689 31161268 -113121221 - Charlie1a DNA MER1_type -2059 702 1 31 26 0 0 chr12 31162086 31162124 -113120365 + AT_rich Low_complexity Low_complexity 1 38 0 484 320 103 25 chr12 31162677 31162958 -113119531 + MLT1H1 LTR MaLR 1 303 -252 748 224 5 82 chr12 31162971 31163167 -113119322 + LTR41 LTR ERVL 10 190 -583 399 235 128 20 chr12 31163455 31163604 -113118885 + LTR41 LTR ERVL 606 770 -3 1136 326 88 70 chr12 31163986 31165024 -113117465 + ERVL LTR ERVL 406 1461 -4024 2405 75 3 0 chr12 31165240 31165535 -113116954 - AluY SINE Alu -15 296 1 473 273 111 35 chr12 31165690 31165888 -113116601 - MIR SINE MIR -30 232 20 1522 150 52 116 chr12 31165925 31166450 -113116039 - MER4C LTR ERV1 0 465 58 360 0 0 0 chr12 31166450 31166490 -113115999 + (TG)n Simple_repeat Simple_repeat 1 40 0 1522 150 52 116 chr12 31166490 31166545 -113115944 - MER4C LTR ERV1 -407 58 1 3457 172 21 66 chr12 31166546 31167319 -113115170 - MER4C-int LTR ERV1 0 6598 5861 225 224 0 0 chr12 31167320 31167378 -113115111 + (TA)n Simple_repeat Simple_repeat 2 59 0 226 109 0 0 chr12 31167378 31167424 -113115065 + LTR66 LTR ERVL 394 439 -171 * 248 137 20 0 chr12 31167410 31167461 -113115028 - LTR66 LTR ERVL -171 439 388 7553 173 81 45 chr12 31167462 31169819 -113112670 - MER4C-int LTR ERV1 -1326 4620 2810 480 188 7 69 chr12 31169825 31170146 -113112343 - MER4A LTR ERV1 -238 348 1 1043 227 26 0 chr12 31170168 31170432 -113112057 + L1MB5 LINE L1 5566 5836 -338 1812 148 92 22 chr12 31170432 31170791 -113111698 - LTR26B LTR ERV1 0 531 148 235 100 200 0 chr12 31170791 31170841 -113111648 - LTR26B LTR ERV1 -343 188 129 8349 152 23 23 chr12 31170842 31172391 -113110098 - L1P LINE L1 -4587 1559 11 673 239 5 73 chr12 31172636 31172854 -113109635 - LTR26 LTR ERV1 0 603 401 4108 108 12 0 chr12 31172867 31173459 -113109030 - L1PA10 LINE L1 -11 6472 5874 4500 57 3 0 chr12 31173492 31174074 -113108415 - LTR8 LTR ERV1 -107 584 1 33749 69 16 12 chr12 31174075 31178891 -113103598 - HUERS-P1 LTR ERV1 -1 6262 1427 5995 104 36 2 chr12 31178895 31179782 -113102707 - HUERS-P1 LTR ERV1 -5346 917 1 996 112 0 0 chr12 31179783 31179926 -113102563 - LTR8 LTR ERV1 -1 690 548 21526 190 23 22 chr12 31179926 31182929 -113099560 - L1PA10 LINE L1 -743 5718 2576 2377 107 0 3 chr12 31182929 31183238 -113099251 - AluY SINE Alu -3 308 1 21526 190 23 22 chr12 31183238 31185584 -113096905 - L1PA10 LINE L1 -3885 2576 234 393 145 0 26 chr12 31185561 31185671 -113096818 + L1PA10 LINE L1 6074 6181 0 * 718 150 7 54 chr12 31185671 31185818 -113096671 + L1MCa LINE L1 472 611 -5815 4623 243 19 10 chr12 31185863 31187215 -113095274 + L1MC1 LINE L1 3884 5248 -898 565 150 230 0 chr12 31187215 31187315 -113095174 + FLAM_C SINE Alu 1 123 -20 5269 144 16 25 chr12 31187337 31187421 -113095068 + L1MC1 LINE L1 5254 5337 -996 1636 186 10 10 chr12 31187421 31187711 -113094778 + AluJb SINE Alu 3 292 -20 5269 144 16 25 chr12 31187711 31188598 -113093891 + L1MC1 LINE L1 5337 6217 -116 867 236 130 95 chr12 31188598 31189136 -113093353 - MER34B LTR ERV1 0 565 9 667 171 0 8 chr12 31189156 31189279 -113093210 + L1MC1 LINE L1 6212 6333 0 1112 179 130 3 chr12 31189292 31189599 -113092890 + MER45R DNA AcHobo 1233 1578 -3 309 263 13 0 chr12 31189795 31189871 -113092618 - L1MC5 LINE L1 -179 7782 7706 182 36 0 36 chr12 31190843 31190871 -113091618 + (CAAAAA)n Simple_repeat Simple_repeat 1 27 0 203 179 0 0 chr12 31191053 31191092 -113091397 + T-rich Low_complexity Low_complexity 1 39 0 2160 122 0 7 chr12 31191133 31191437 -113091052 + AluSx SINE Alu 1 302 -10 368 275 10 62 chr12 31191761 31191954 -113090535 - L1MC5 LINE L1 -63 7898 7716 1435 173 0 60 chr12 31191955 31192239 -113090250 - AluSx SINE Alu -9 303 37 842 222 104 32 chr12 31192255 31192696 -113089793 - L1MC5 LINE L1 -234 7727 7255 2226 99 0 0 chr12 31192883 31193198 -113089291 + AluY SINE Alu 1 315 0 1078 149 6 0 chr12 31193201 31193369 -113089120 + AluSc SINE Alu 133 301 -8 2147 142 66 57 chr12 31193506 31193930 -113088559 - MSTA LTR MaLR 0 428 1 2775 142 35 12 chr12 31194276 31194762 -113087727 + LOR1a LTR ERV1 1 497 0 21303 121 38 42 chr12 31194763 31195582 -113086907 + LOR1a-int LTR ERV1 2 823 -7297 531 0 0 0 chr12 31195582 31195641 -113086848 + (TG)n Simple_repeat Simple_repeat 2 60 0 21303 121 38 42 chr12 31195641 31197661 -113084828 + LOR1a-int LTR ERV1 823 2850 -5270 2016 141 0 0 chr12 31197661 31197987 -113084502 + AluSx SINE Alu 1 326 0 21303 121 38 42 chr12 31197987 31198057 -113084432 + LOR1a-int LTR ERV1 2850 2919 -5201 248 28 56 0 chr12 31198057 31198093 -113084396 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 21303 121 38 42 chr12 31198093 31198126 -113084363 + LOR1a-int LTR ERV1 2919 2951 -5169 2026 137 0 3 chr12 31198126 31198418 -113084071 - AluSx SINE Alu -21 291 1 21303 121 38 42 chr12 31198418 31198909 -113083580 + LOR1a-int LTR ERV1 2951 3443 -4677 1697 176 0 14 chr12 31198909 31199188 -113083301 + AluJb SINE Alu 13 287 -25 21303 121 38 42 chr12 31199188 31199811 -113082678 + LOR1a-int LTR ERV1 3443 4046 -4074 1083 252 19 4 chr12 31199915 31200181 -113082308 - LTR43 LTR ERV1 -141 461 192 264 135 19 0 chr12 31200367 31200419 -113082070 - LTR60 LTR ERV1 -531 55 3 2120 123 14 113 chr12 31201226 31201715 -113080774 - HUERS-P2 LTR ERV1 -2772 3174 2796 937 171 12 43 chr12 31201707 31201963 -113080526 - HUERS-P2 LTR ERV1 -4917 2040 1815 * 267 343 0 0 chr12 31202556 31202658 -113079831 - HUERS-P2 LTR ERV1 -1089 1999 1898 489 279 6 6 chr12 31202840 31202998 -113079491 - HUERS-P2 LTR ERV1 -5229 1862 1705 2174 170 45 16 chr12 31203161 31203609 -113078880 - LOR1b LTR ERV1 0 461 1 578 193 70 29 chr12 31204631 31204802 -113077687 - HUERS-P2 LTR ERV1 -3536 1262 1085 1018 258 106 11 chr12 31204990 31205359 -113077130 - LTR43 LTR ERV1 -20 582 179 353 132 15 0 chr12 31205535 31205603 -113076886 - LTR60 LTR ERV1 -517 69 1 8780 118 16 6 chr12 31205603 31207070 -113075419 + LOR1a-int LTR ERV1 4042 5524 -2596 1422 167 4 4 chr12 31207060 31207324 -113075165 + LOR1a-int LTR ERV1 5801 6064 -2056 * 371 75 150 12 chr12 31207323 31207403 -113075086 + LOR1a-int LTR ERV1 8030 8120 0 * 2841 146 22 14 chr12 31207403 31207623 -113074866 + LOR1a LTR ERV1 1 218 -279 2206 128 51 14 chr12 31207623 31207974 -113074515 + THE1B LTR MaLR 1 364 0 2841 146 22 14 chr12 31207974 31208246 -113074243 + LOR1a LTR ERV1 218 497 0 733 121 7 57 chr12 31208486 31208627 -113073862 - L1PA16 LINE L1 0 6166 6033 290 214 14 0 chr12 31208704 31208774 -113073715 - L1PA16 LINE L1 -173 5993 5923 7962 190 24 19 chr12 31208788 31209827 -113072662 - L1PA16 LINE L1 -9 6157 5124 2280 112 0 6 chr12 31209827 31210139 -113072350 - AluY SINE Alu -1 310 1 7962 190 24 19 chr12 31210139 31212023 -113070466 - L1PA16 LINE L1 -1042 5124 3230 744 301 60 0 chr12 31212041 31212357 -113070132 - L1 LINE L1 -3314 2832 2498 2079 169 9 0 chr12 31212942 31213274 -113069215 - MER1B DNA MER1_type -2 335 1 2257 112 3 13 chr12 31213377 31213689 -113068800 + AluSx SINE Alu 1 309 -3 2087 119 3 3 chr12 31213838 31214133 -113068356 + AluY SINE Alu 1 295 -16 248 369 36 0 chr12 31214339 31214450 -113068039 - L2 LINE L2 -7 3306 3192 282 247 11 11 chr12 31214463 31214556 -113067933 + (TA)n Simple_repeat Simple_repeat 1 93 0 557 246 93 7 chr12 31214565 31214801 -113067688 - L2 LINE L2 -161 3152 2832 2231 96 0 16 chr12 31214801 31215104 -113067385 + AluY SINE Alu 1 298 -13 1873 108 8 0 chr12 31215495 31215745 -113066744 - AluSc SINE Alu -14 295 44 26 30 0 0 chr12 31215790 31215823 -113066666 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr12 31216877 31216905 -113065584 + AT_rich Low_complexity Low_complexity 1 28 0 2132 214 48 53 chr12 31217515 31217884 -113064605 - MLT1E LTR MaLR -8 585 219 1836 100 0 38 chr12 31217884 31218021 -113064468 + L1MA1 LINE L1 6018 6140 -162 2515 63 0 0 chr12 31218021 31218320 -113064169 + AluY SINE Alu 1 299 -12 1836 100 0 38 chr12 31218320 31218472 -113064017 + L1MA1 LINE L1 6140 6296 -6 2132 214 48 53 chr12 31218472 31218686 -113063803 - MLT1E LTR MaLR -374 219 5 3956 259 102 32 chr12 31219653 31221550 -113060939 + L2 LINE L2 1206 3313 0 229 273 0 0 chr12 31222553 31222608 -113059881 + L2 LINE L2 3213 3267 -5 189 171 0 0 chr12 31223408 31223443 -113059046 + T-rich Low_complexity Low_complexity 1 35 0 411 222 22 11 chr12 31223961 31224051 -113058438 + MIR3 SINE MIR 93 183 -25 186 43 0 0 chr12 31224445 31224468 -113058021 + (CAT)n Simple_repeat Simple_repeat 2 24 0 4623 72 0 0 chr12 31224558 31225188 -113057301 + L1PA7 LINE L1 5543 6172 0 795 223 17 19 chr12 31225994 31226262 -113056227 + MER83B LTR ERV1 96 365 -12 1904 151 0 13 chr12 31227059 31227370 -113055119 + AluJb SINE Alu 1 307 -5 1136 226 224 18 chr12 31227666 31228084 -113054405 + L2 LINE L2 2303 2816 -498 2896 141 60 0 chr12 31228084 31228553 -113053936 + LOR1a LTR ERV1 1 497 0 1136 226 224 18 chr12 31228553 31228572 -113053917 + L2 LINE L2 2816 2830 -484 2001 154 9 12 chr12 31228580 31228925 -113053564 + LOR1a-int LTR ERV1 28 371 -7749 4595 120 72 16 chr12 31228937 31229760 -113052729 + MER83B-int LTR ERV1 203 1071 -7049 * 8956 101 12 20 chr12 31229759 31229771 -113052718 + MER83B-int LTR ERV1 2004 2015 -6105 4460 148 61 8 chr12 31229771 31230555 -113051934 + LTR1B LTR ERV1 1 826 0 8956 101 12 20 chr12 31230555 31231501 -113050988 + MER83B-int LTR ERV1 2015 2950 -5170 2175 128 0 22 chr12 31231501 31231820 -113050669 + AluSx SINE Alu 1 312 0 8956 101 12 20 chr12 31231820 31232326 -113050163 + MER83B-int LTR ERV1 2950 3458 -4662 7589 106 27 7 chr12 31232324 31234276 -113048213 + MER83B-int LTR ERV1 3503 5524 -2596 * 1437 97 113 4 chr12 31234266 31234504 -113047985 + MER83B-int LTR ERV1 5801 6064 -2056 * 530 139 0 0 chr12 31234503 31234589 -113047900 + LOR1a-int LTR ERV1 8030 8115 -5 * 3247 128 2 10 chr12 31234598 31235099 -113047390 + LOR1a LTR ERV1 1 497 0 685 232 79 116 chr12 31235122 31235472 -113047017 + L2 LINE L2 2817 3146 -167 2233 116 0 0 chr12 31235472 31235764 -113046725 - AluSg SINE Alu -18 292 1 685 232 79 116 chr12 31235764 31235895 -113046594 + L2 LINE L2 3146 3280 -33 2158 126 7 0 chr12 31236211 31236520 -113045969 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr12 31236598 31236630 -113045859 + AT_rich Low_complexity Low_complexity 1 32 0 255 335 33 20 chr12 31237233 31237385 -113045104 + L3b LINE CR1 1241 1394 -189 25947 30 3 1 chr12 31237406 31241316 -113041173 - L1PA4 LINE L1 -3 6152 2237 29 0 0 0 chr12 31244044 31244073 -113038416 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 31245664 31245692 -113036797 + AT_rich Low_complexity Low_complexity 1 28 0 518 91 131 0 chr12 31246093 31246192 -113036297 + LTR38 LTR ERV1 1 112 -444 461 231 6 64 chr12 31246249 31246405 -113036084 - L2 LINE L2 -5 3308 3162 271 298 41 50 chr12 31248763 31248884 -113033605 - L2 LINE L2 0 3272 3153 22 56 0 0 chr12 31248940 31248976 -113033513 + AT_rich Low_complexity Low_complexity 1 36 0 228 271 35 12 chr12 31248983 31249065 -113033424 - MIR SINE MIR 0 262 179 498 311 123 21 chr12 31249065 31249300 -113033189 + MIR SINE MIR 1 259 -3 2183 141 2 72 chr12 31249661 31249837 -113032652 + MLT1B LTR MaLR 1 188 -202 2256 94 3 3 chr12 31249837 31250135 -113032354 + AluSq SINE Alu 1 298 -15 2183 141 2 72 chr12 31250135 31250377 -113032112 + MLT1B LTR MaLR 188 390 0 22 0 0 0 chr12 31251177 31251199 -113031290 + AT_rich Low_complexity Low_complexity 1 22 0 203 309 36 24 chr12 31251456 31251540 -113030949 + MIR3 SINE MIR 72 156 -52 286 211 0 48 chr12 31251753 31251857 -113030632 + (TTTA)n Simple_repeat Simple_repeat 2 100 0 21 36 0 0 chr12 31251876 31251904 -113030585 + AT_rich Low_complexity Low_complexity 1 28 0 2388 129 32 10 chr12 31252784 31253194 -113029295 + L1MB2 LINE L1 5746 6164 -7 729 246 41 17 chr12 31253221 31253522 -113028967 + L1MB8 LINE L1 5875 6178 0 528 326 30 38 chr12 31254052 31254451 -113028038 + L1ME LINE L1 24 419 -6004 688 313 73 15 chr12 31254750 31255478 -113027011 + L1ME LINE L1 1121 1895 -4887 871 263 81 11 chr12 31255479 31255831 -113026658 + L1ME LINE L1 5702 6106 -851 2827 154 63 0 chr12 31255831 31256319 -113026170 + LTR44 LTR ERV1 1 519 0 871 263 81 11 chr12 31256319 31256543 -113025946 + L1ME LINE L1 6106 6313 -644 426 267 31 97 chr12 31256753 31256852 -113025637 + L2 LINE L2 2978 3082 -231 2282 92 0 0 chr12 31256852 31257166 -113025323 + AluSx SINE Alu 1 314 0 426 267 31 97 chr12 31257166 31257323 -113025166 + L2 LINE L2 3082 3218 -95 1465 211 56 30 chr12 31257323 31257749 -113024740 + MLT1C LTR MaLR 6 442 -25 323 294 0 20 chr12 31257777 31257879 -113024610 + L2 LINE L2 3209 3308 -5 908 206 16 0 chr12 31257934 31258118 -113024371 - MER58A DNA MER1_type 0 224 38 180 125 0 0 chr12 31258802 31258834 -113023655 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 206 292 14 0 chr12 31258842 31258914 -113023575 + (CATA)n Simple_repeat Simple_repeat 3 75 0 1767 112 97 4 chr12 31260013 31260280 -113022209 - AluSg SINE Alu -18 292 1 895 102 12 42 chr12 31260281 31260448 -113022041 + L1MA7 LINE L1 6128 6289 -2 29 78 0 0 chr12 31260449 31260513 -113021976 + AT_rich Low_complexity Low_complexity 1 64 0 904 216 7 64 chr12 31261039 31261321 -113021168 - L1MA10 LINE L1 -4 6330 6065 285 29 0 0 chr12 31261321 31261355 -113021134 + (TC)n Simple_repeat Simple_repeat 1 34 0 2212 102 0 0 chr12 31261360 31261645 -113020844 - AluSx SINE Alu -27 285 1 685 219 0 0 chr12 31261652 31261807 -113020682 - L1 LINE L1 -1278 4932 4778 1385 226 91 8 chr12 31261815 31262178 -113020311 - L1 LINE L1 -5748 393 1 1683 106 57 0 chr12 31263257 31263661 -113018828 - L1PA16 LINE L1 -9 6157 5683 1593 144 26 103 chr12 31263890 31264307 -113018182 + MLT1B LTR MaLR 1 385 -5 509 264 9 0 chr12 31265497 31265607 -113016882 + MIR SINE MIR 28 138 -124 349 293 60 0 chr12 31266443 31266559 -113015930 - MIR SINE MIR -110 152 30 956 201 77 14 chr12 31267081 31267290 -113015199 + MER58A DNA MER1_type 3 224 0 699 259 0 46 chr12 31267522 31267734 -113014755 + MIR SINE MIR 45 242 -20 22 0 0 0 chr12 31267940 31267962 -113014527 + AT_rich Low_complexity Low_complexity 1 22 0 2295 91 3 0 chr12 31268053 31268349 -113014140 + AluY SINE Alu 1 297 -14 2508 176 62 10 chr12 31268437 31268920 -113013569 + MLT2B3 LTR ERVL 1 508 -46 261 0 0 0 chr12 31268921 31268950 -113013539 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 9287 115 27 41 chr12 31268950 31270063 -113012426 - Tigger1 DNA MER2_type 0 2418 1291 699 118 0 0 chr12 31270063 31270198 -113012291 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 9287 115 27 41 chr12 31270198 31270219 -113012270 - Tigger1 DNA MER2_type -1127 1291 1271 2327 95 0 3 chr12 31270219 31270513 -113011976 - AluY SINE Alu -18 293 1 9287 115 27 41 chr12 31270513 31271765 -113010724 - Tigger1 DNA MER2_type -1147 1271 24 235 206 127 0 chr12 31271768 31271831 -113010658 + MLT2B1 LTR ERVL 444 514 -6 658 172 11 81 chr12 31272845 31273019 -113009470 - MLT1C LTR MaLR 0 467 306 312 275 80 46 chr12 31273127 31273429 -113009060 + L1ME LINE L1 5265 5576 -586 4475 180 60 4 chr12 31273485 31275305 -113007184 - L1MA4A LINE L1 -20 6283 4367 624 177 190 41 chr12 31275397 31275692 -113006797 - MER52A LTR ERV1 -147 970 283 934 167 11 80 chr12 31275793 31275984 -113006505 - L1MA4A LINE L1 -1779 4367 4197 2615 65 0 0 chr12 31275984 31276293 -113006196 - AluY SINE Alu -2 309 1 934 167 11 80 chr12 31276293 31276364 -113006125 - L1MA4A LINE L1 -1949 4197 4123 859 240 115 5 chr12 31276528 31276745 -113005744 + MIR SINE MIR 22 262 0 4751 177 23 10 chr12 31276956 31277862 -113004627 + MER49 LTR ERV1 6 923 0 269 206 0 14 chr12 31278237 31278310 -113004179 + GA-rich Low_complexity Low_complexity 3 74 0 189 74 0 0 chr12 31278455 31278482 -113004007 + (TC)n Simple_repeat Simple_repeat 1 27 0 12585 151 45 6 chr12 31278613 31279296 -113003193 + L1MA2 LINE L1 2593 3248 -3056 2280 102 0 7 chr12 31279296 31279589 -113002900 + AluSg SINE Alu 1 291 -19 12585 151 45 6 chr12 31279589 31282489 -113000000 + L1MA2 LINE L1 3248 6304 0 457 337 128 32 chr12 31282543 31282917 -112999572 + L2 LINE L2 2857 3266 -6 1890 134 80 11 chr12 31285091 31285442 -112997047 + THE1C LTR MaLR 1 375 0 2161 138 0 0 chr12 31286256 31286553 -112995936 + AluSx SINE Alu 1 297 -15 278 123 18 0 chr12 31287423 31287480 -112995009 + GA-rich Low_complexity Low_complexity 2 59 0 207 0 0 0 chr12 31287515 31287538 -112994951 + (CTTTG)n Simple_repeat Simple_repeat 4 26 0 24 53 0 0 chr12 31289381 31289419 -112993070 + AT_rich Low_complexity Low_complexity 1 38 0 260 269 172 11 chr12 31290149 31290242 -112992247 + MIR SINE MIR 120 227 -35 1119 281 110 29 chr12 31290277 31290966 -112991523 + L2 LINE L2 2540 3307 -6 215 256 140 10 chr12 31291526 31291630 -112990859 - MIR SINE MIR -67 141 28 2258 116 0 0 chr12 31292683 31292984 -112989505 - AluSx SINE Alu -11 301 1 21 82 0 0 chr12 31293355 31293404 -112989085 + AT_rich Low_complexity Low_complexity 1 49 0 2170 114 7 0 chr12 31295354 31295660 -112986829 + AluSg SINE Alu 1 308 -2 26 82 0 0 chr12 31297005 31297066 -112985423 + AT_rich Low_complexity Low_complexity 1 61 0 290 175 79 16 chr12 31297487 31297550 -112984939 + MER103 DNA DNA 4 70 -96 1546 186 0 19 chr12 31297605 31297874 -112984615 + AluJo SINE Alu 39 302 -10 2963 103 26 7 chr12 31298531 31298995 -112983494 - L1MA2 LINE L1 0 6304 5832 2329 89 0 0 chr12 31299375 31299678 -112982811 + AluY SINE Alu 1 303 -8 26 74 0 0 chr12 31300173 31300227 -112982262 + AT_rich Low_complexity Low_complexity 1 54 0 287 279 25 0 chr12 31300370 31300449 -112982040 - MIR SINE MIR -71 137 57 215 348 114 38 chr12 31300590 31300748 -112981741 - MIR SINE MIR -59 203 34 6785 125 54 4 chr12 31300840 31302013 -112980476 + Tigger3b DNA MER2_type 1 1231 0 32 57 0 0 chr12 31302238 31302291 -112980198 + AT_rich Low_complexity Low_complexity 1 53 0 2111 113 0 0 chr12 31302342 31302624 -112979865 - AluSx SINE Alu -30 282 1 670 214 169 4 chr12 31302688 31302954 -112979535 + LTR37A LTR ERV1 115 424 -2 2362 82 3 25 chr12 31303076 31303394 -112979095 + AluY SINE Alu 1 311 0 1720 175 86 6 chr12 31303411 31303749 -112978740 + MLT1A1 LTR MaLR 1 365 0 2217 112 0 0 chr12 31305946 31306249 -112976240 + AluSx SINE Alu 1 303 -9 228 220 160 20 chr12 31308624 31308724 -112973765 - MIR3 SINE MIR -92 116 3 315 300 0 11 chr12 31308912 31309002 -112973487 + L1MEc LINE L1 2236 2324 -4072 271 146 0 0 chr12 31309003 31309044 -112973445 + 5S rRNA rRNA 2 42 -79 897 180 90 86 chr12 31309120 31309398 -112973091 - MLT1B LTR MaLR -96 294 16 701 212 6 6 chr12 31309411 31309576 -112972913 - L1ME2 LINE L1 -2 6162 5998 335 123 231 0 chr12 31309610 31309675 -112972814 + MADE1 DNA Mariner 1 80 0 190 288 62 12 chr12 31309714 31309794 -112972695 + MIR SINE MIR 57 140 -122 415 316 59 11 chr12 31310072 31310259 -112972230 - MIR SINE MIR -10 252 57 1494 184 33 11 chr12 31311418 31311741 -112970748 + MER61B LTR ERV1 2 425 0 3631 173 38 20 chr12 31312052 31312762 -112969727 - MER21B LTR ERV1 -2 861 139 1747 194 13 18 chr12 31312755 31313137 -112969352 + MER65C LTR ERV1 82 461 0 * 1856 171 21 16 chr12 31313647 31314073 -112968416 + L1M4c LINE L1 834 1261 -5123 1546 186 0 19 chr12 31314380 31314649 -112967840 - AluJo SINE Alu -10 302 39 290 175 79 16 chr12 31314704 31314767 -112967722 - MER103 DNA DNA -96 70 4 26 82 0 0 chr12 31315188 31315249 -112967240 + AT_rich Low_complexity Low_complexity 1 61 0 1949 107 8 0 chr12 31316594 31316856 -112965633 - AluSc SINE Alu -2 307 44 26 30 0 0 chr12 31316901 31316934 -112965555 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr12 31317988 31318016 -112964473 + AT_rich Low_complexity Low_complexity 1 28 0 2090 214 50 53 chr12 31318627 31318995 -112963494 - MLT1E LTR MaLR -8 585 218 1836 100 0 38 chr12 31318995 31319132 -112963357 + L1MA1 LINE L1 6018 6140 -162 2515 63 0 0 chr12 31319132 31319431 -112963058 + AluY SINE Alu 1 299 -12 1836 100 0 38 chr12 31319431 31319583 -112962906 + L1MA1 LINE L1 6140 6296 -6 2090 214 50 53 chr12 31319583 31319797 -112962692 - MLT1E LTR MaLR -375 218 5 3255 259 94 27 chr12 31320764 31322661 -112959828 + L2 LINE L2 1206 3313 0 500 341 14 27 chr12 31323145 31323438 -112959051 - ERVL LTR ERVL -4563 1201 913 2353 57 0 0 chr12 31323544 31323823 -112958666 - AluY SINE Alu -32 279 1 6547 95 14 0 chr12 31323825 31324894 -112957595 - L1PA13 LINE L1 -5 6158 5100 3874 128 40 11 chr12 31324894 31325590 -112956899 - L1PA16 LINE L1 -284 6585 5875 20494 87 10 2 chr12 31325628 31329092 -112953397 - L1PA7 LINE L1 -16 6453 2966 8219 114 21 16 chr12 31329094 31330334 -112952155 - L1PA7 LINE L1 -5211 1250 5 2153 205 47 2 chr12 31330341 31330833 -112951656 - L1PA16 LINE L1 -958 5891 5378 * 15818 157 13 19 chr12 31330811 31331404 -112951085 - L1PA16 LINE L1 -4283 2566 1971 2344 122 0 0 chr12 31331404 31331716 -112950773 - AluSx SINE Alu 0 312 1 15818 157 13 19 chr12 31331716 31333701 -112948788 - L1PA16 LINE L1 -4878 1971 2 732 180 90 66 chr12 31333704 31333948 -112948541 - L1M4c LINE L1 -4856 1528 1279 1994 195 25 42 chr12 31334192 31334757 -112947732 + pTR5 LTR ERV1 790 1344 -1094 4647 123 15 126 chr12 31334773 31335697 -112946792 + LTR12 LTR ERV1 5 826 0 1777 271 96 38 chr12 31335699 31336683 -112945806 + L1 LINE L1 2678 3718 -2428 433 115 44 133 chr12 31337095 31337208 -112945281 - MER53 DNA DNA -82 107 5 1630 233 45 31 chr12 31338038 31338527 -112943962 + L2 LINE L2 1557 2052 -1262 510 250 85 94 chr12 31338556 31339028 -112943461 - MLT1H LTR MaLR -19 530 1 655 176 17 25 chr12 31339087 31339206 -112943283 - FLAM_A SINE Alu -12 121 4 2547 260 104 18 chr12 31339218 31340274 -112942215 + L2 LINE L2 2074 3220 -93 331 277 75 75 chr12 31340369 31340651 -112941838 - MLT1J LTR MaLR 0 511 230 2131 150 0 0 chr12 31340945 31341251 -112941238 + AluSx SINE Alu 1 306 -6 979 219 44 133 chr12 31341628 31342148 -112940341 + L1MC4 LINE L1 7138 7611 -431 4026 210 32 48 chr12 31342148 31342410 -112940079 + Charlie1a DNA MER1_type 1 266 -2495 3066 90 7 48 chr12 31342410 31342865 -112939624 - L1MA2 LINE L1 0 6304 5869 4026 210 32 48 chr12 31342865 31343600 -112938889 + Charlie1a DNA MER1_type 266 982 -473 232 263 32 63 chr12 31343611 31343706 -112938783 - MIR SINE MIR -7 255 164 1654 177 35 7 chr12 31345669 31345957 -112936532 + AluJb SINE Alu 1 296 -16 767 233 20 0 chr12 31346034 31346184 -112936305 - MER58B DNA MER1_type 0 341 189 2114 118 0 16 chr12 31346192 31346497 -112935992 - AluSx SINE Alu -7 305 6 39770 40 0 2 chr12 31346612 31351367 -112931122 - L1P LINE L1 -1400 4746 1 225 295 26 13 chr12 31352213 31352291 -112930198 - MIR SINE MIR -112 150 72 198 184 41 41 chr12 31352919 31352968 -112929521 + MIR3 SINE MIR 7 55 -153 714 264 62 0 chr12 31352993 31353186 -112929303 - MIR SINE MIR -15 247 43 952 310 61 22 chr12 31353201 31353608 -112928881 + LTR16A LTR ERVL 18 440 -10 4481 164 28 19 chr12 31353744 31354523 -112927966 - MER21B LTR ERV1 -77 786 1 237 261 127 61 chr12 31354617 31354782 -112927707 + L2 LINE L2 1865 2040 -1274 506 335 74 54 chr12 31354786 31354994 -112927495 + L2 LINE L2 2205 2408 -906 1799 157 30 13 chr12 31354994 31355299 -112927190 - AluJb SINE Alu -2 310 1 506 335 74 54 chr12 31355299 31355606 -112926883 + L2 LINE L2 2408 2730 -584 2280 105 3 0 chr12 31355631 31355936 -112926553 - AluSp SINE Alu -7 306 1 294 361 56 0 chr12 31355970 31356078 -112926411 + MIR SINE MIR 2 115 -147 303 268 21 10 chr12 31356133 31356230 -112926259 + MLT1J1 LTR MaLR 54 151 -295 265 121 32 32 chr12 31356569 31356693 -112925796 + (CCCA)n Simple_repeat Simple_repeat 3 126 0 240 149 11 35 chr12 31356736 31356823 -112925666 + C-rich Low_complexity Low_complexity 6 90 0 196 83 0 0 chr12 31356999 31357023 -112925466 + (A)n Simple_repeat Simple_repeat 1 24 0 249 293 0 0 chr12 31357023 31357064 -112925425 + C-rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr12 31357592 31357615 -112924874 + AT_rich Low_complexity Low_complexity 1 23 0 282 262 106 35 chr12 31360983 31361124 -112921365 + L1ME LINE L1 5673 5823 -298 25 51 0 0 chr12 31361137 31361176 -112921313 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 31362140 31362161 -112920328 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr12 31362188 31362220 -112920269 + AT_rich Low_complexity Low_complexity 1 32 0 3341 160 71 6 chr12 31362537 31362957 -112919532 + L1MA7 LINE L1 5620 6096 -195 225 0 0 0 chr12 31362957 31362982 -112919507 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3341 160 71 6 chr12 31362982 31363192 -112919297 + L1MA7 LINE L1 6096 6291 0 216 0 0 0 chr12 31363750 31363774 -112918715 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2783 88 11 0 chr12 31366808 31367159 -112915330 - THE1A LTR MaLR 0 355 1 2627 151 46 12 chr12 31367548 31367960 -112914529 + MSTA LTR MaLR 3 428 0 2603 190 105 70 chr12 31369028 31369934 -112912555 - L1ME2 LINE L1 -3 6161 5188 552 194 15 8 chr12 31370310 31370444 -112912045 - L1ME2 LINE L1 -945 5201 5067 2293 160 29 75 chr12 31370447 31370928 -112911561 + MLT1C LTR MaLR 1 459 -8 220 288 47 108 chr12 31371610 31371781 -112910708 + L2 LINE L2 2933 3066 -206 2667 89 100 8 chr12 31371781 31372172 -112910317 - MSTA LTR MaLR 0 428 2 220 288 47 108 chr12 31372172 31372364 -112910125 + L2 LINE L2 3066 3268 -4 2122 175 5 56 chr12 31372438 31372849 -112909640 - MLT1B LTR MaLR 0 390 1 189 308 77 0 chr12 31373021 31373086 -112909403 - MIR SINE MIR -136 126 57 436 238 229 51 chr12 31373191 31373405 -112909084 - MIR SINE MIR -3 259 8 182 292 34 45 chr12 31373425 31373514 -112908975 - MIR SINE MIR -153 109 22 258 188 0 0 chr12 31374667 31374715 -112907774 + L2 LINE L2 3261 3308 -5 4190 159 33 11 chr12 31374759 31375601 -112906888 - L1MB4 LINE L1 0 6180 5320 1005 228 149 29 chr12 31375704 31375969 -112906520 + L2 LINE L2 2668 2900 -413 2752 191 2 6 chr12 31375969 31376457 -112906032 - MER66B LTR ERV1 0 486 1 1005 228 149 29 chr12 31376457 31376766 -112905723 + L2 LINE L2 2900 3313 0 260 303 50 5 chr12 31376993 31377160 -112905329 - L1ME LINE L1 -458 5712 5534 274 304 40 36 chr12 31377282 31377558 -112904931 + HAL1b LINE L1 661 937 -411 2286 110 0 0 chr12 31377694 31377993 -112904496 - AluSc SINE Alu -10 299 1 1106 172 0 0 chr12 31378028 31378202 -112904287 + AluJb SINE Alu 137 310 -2 366 204 0 0 chr12 31378215 31378303 -112904186 + GA-rich Low_complexity Low_complexity 3 90 0 1288 97 31 35 chr12 31378527 31378755 -112903734 + L1MA10 LINE L1 6101 6327 -7 404 336 58 41 chr12 31378758 31379151 -112903338 + L1M4 LINE L1 2235 2634 -3512 951 196 0 6 chr12 31379961 31380119 -112902370 + FRAM SINE Alu 1 152 -24 5028 72 37 7 chr12 31380729 31381432 -112901057 - L1PA11 LINE L1 0 6174 5451 699 221 22 54 chr12 31382384 31382607 -112899882 - L1ME1 LINE L1 -50 6116 5941 2476 165 24 0 chr12 31382727 31383145 -112899344 - MSTA LTR MaLR 0 428 1 744 206 0 21 chr12 31383177 31383318 -112899171 - FRAM SINE Alu -19 157 20 4060 202 42 31 chr12 31383349 31383455 -112899034 - L1MB7 LINE L1 -54 6130 6027 2343 101 0 0 chr12 31383455 31383763 -112898726 + AluSx SINE Alu 1 308 -4 4060 202 42 31 chr12 31383763 31384780 -112897709 - L1MB7 LINE L1 -157 6027 5023 2283 68 10 3 chr12 31384780 31385074 -112897415 + AluY SINE Alu 1 296 -15 4060 202 42 31 chr12 31385074 31385903 -112896586 - L1MB7 LINE L1 -1161 5023 4204 369 0 0 0 chr12 31385903 31385944 -112896545 + (TG)n Simple_repeat Simple_repeat 1 41 0 2091 94 14 4 chr12 31385944 31386220 -112896269 - AluSx SINE Alu -33 279 1 4060 202 42 31 chr12 31386220 31386309 -112896180 - L1MB7 LINE L1 -1979 4205 4066 1829 183 36 22 chr12 31386320 31386680 -112895809 - MLT1A1 LTR MaLR 0 365 1 324 0 0 0 chr12 31386691 31386727 -112895762 + (TG)n Simple_repeat Simple_repeat 2 37 0 986 185 11 17 chr12 31386733 31386911 -112895578 - AluJo SINE Alu -30 282 106 366 297 8 23 chr12 31387276 31387404 -112895085 - AluJo SINE Alu -176 126 1 321 269 32 0 chr12 31388241 31388334 -112894155 - MIR SINE MIR -64 144 49 384 320 8 8 chr12 31389100 31389222 -112893267 - MER5B DNA MER1_type -6 172 51 551 155 0 10 chr12 31389224 31389321 -112893168 - FLAM_A SINE Alu -15 127 32 349 130 0 0 chr12 31389323 31389377 -112893112 - MER5B DNA MER1_type -123 55 2 395 287 19 101 chr12 31389592 31389770 -112892719 + MIR SINE MIR 2 152 -110 2232 133 2 63 chr12 31389770 31390185 -112892304 - MLT1B LTR MaLR 0 390 1 395 287 19 101 chr12 31390185 31390274 -112892215 + MIR SINE MIR 152 247 -15 512 180 101 36 chr12 31390274 31390413 -112892076 + L1ME2 LINE L1 6015 6162 -2 24 32 0 0 chr12 31390829 31390860 -112891629 + AT_rich Low_complexity Low_complexity 1 31 0 205 256 0 0 chr12 31391124 31391167 -112891322 + (CATA)n Simple_repeat Simple_repeat 2 44 0 248 217 0 0 chr12 31391279 31391339 -112891150 + L1MA8 LINE L1 6060 6119 -172 1956 151 0 3 chr12 31391359 31391650 -112890839 + AluJo SINE Alu 6 295 -17 2378 72 0 7 chr12 31391698 31392004 -112890485 + AluY SINE Alu 1 304 -7 231 262 16 16 chr12 31392074 31392135 -112890354 + L2 LINE L2 3208 3268 -4 1022 188 24 0 chr12 31392243 31392456 -112890033 - MER57A LTR ERV1 -6 397 180 745 273 60 60 chr12 31392585 31393171 -112889318 + PABL_B LTR ERV1 82 667 0 815 129 122 0 chr12 31393175 31393322 -112889167 - MER57A LTR ERV1 -231 172 8 1497 128 23 0 chr12 31393324 31393582 -112888907 + L1MA6 LINE L1 6037 6300 0 25932 34 2 0 chr12 31393608 31397525 -112884964 - L1PA4 LINE L1 -7 6148 2227 1371 202 48 48 chr12 31398668 31399044 -112883445 - MLT1B LTR MaLR 0 390 15 2485 84 0 0 chr12 31400367 31400676 -112881813 + AluY SINE Alu 1 309 -2 193 290 0 16 chr12 31400710 31400772 -112881717 + L2 LINE L2 3249 3309 -4 333 305 73 33 chr12 31400807 31400958 -112881531 + MIR3 SINE MIR 21 177 -31 1982 162 59 0 chr12 31401034 31401422 -112881067 + L1MA4 LINE L1 5882 6292 -8 2508 81 0 17 chr12 31402104 31402452 -112880037 + L1PA8 LINE L1 5828 6169 -3 548 140 0 0 chr12 31402620 31402713 -112879776 + L1PA5 LINE L1 6044 6136 -18 1327 323 42 37 chr12 31402876 31403637 -112878852 - L3 LINE CR1 -378 1199 435 383 20 39 0 chr12 31403987 31404038 -112878451 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 474 188 58 43 chr12 31404216 31404354 -112878135 - L1ME LINE L1 -452 5669 5530 213 347 121 0 chr12 31404400 31404524 -112877965 - L2 LINE L2 -1019 2295 2157 181 241 193 48 chr12 31404528 31404611 -112877878 - MIR3 SINE MIR -26 182 88 189 0 0 0 chr12 31405589 31405610 -112876879 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5226 134 37 32 chr12 31406785 31407703 -112874786 + MER49 LTR ERV1 1 923 0 2525 65 0 0 chr12 31408390 31408700 -112873789 + AluY SINE Alu 1 310 -1 261 156 0 0 chr12 31409736 31409781 -112872708 - Charlie8 DNA MER1_type -2252 165 121 2530 144 56 9 chr12 31410299 31410507 -112871982 - L1MA9 LINE L1 0 6312 6115 7246 121 43 7 chr12 31410507 31411695 -112870794 - Tigger3b DNA MER2_type 0 1231 1 2530 144 56 9 chr12 31411695 31411951 -112870538 - L1MA9 LINE L1 -197 6115 5826 2165 132 0 3 chr12 31411952 31412263 -112870226 + AluSg SINE Alu 1 310 0 228 216 0 0 chr12 31412263 31412314 -112870175 - L1MA9 LINE L1 -390 5793 5743 763 216 0 0 chr12 31412323 31412462 -112870027 + FRAM SINE Alu 18 156 -20 1812 131 19 0 chr12 31412479 31412791 -112869698 - L1MA9 LINE L1 -563 5749 5432 4962 106 31 1 chr12 31412811 31413462 -112869027 - L1PB1 LINE L1 0 6867 6188 189 0 0 0 chr12 31413462 31413483 -112869006 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4962 106 31 1 chr12 31413483 31413607 -112868882 - L1PB1 LINE L1 -679 6188 6069 1492 104 0 0 chr12 31413609 31413810 -112868679 - AluY SINE Alu 0 311 111 903 56 0 0 chr12 31413905 31414012 -112868477 - AluY SINE Alu -204 107 1 9159 211 15 10 chr12 31414012 31416274 -112866215 - L1PB1 LINE L1 -779 6083 3811 437 200 0 0 chr12 31416289 31416374 -112866115 - L1PB1 LINE L1 -6073 790 706 * 11368 184 96 20 chr12 31416364 31420178 -112862311 - L1PBa LINE L1 -2422 4440 302 2366 102 0 0 chr12 31420178 31420481 -112862008 - AluSg SINE Alu -7 303 1 11368 184 96 20 chr12 31420481 31420686 -112861803 - L1PBa LINE L1 -6560 302 114 21 0 0 0 chr12 31420746 31420767 -112861722 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 31420827 31420862 -112861627 + AT_rich Low_complexity Low_complexity 1 35 0 248 324 29 19 chr12 31421723 31421828 -112860661 + MIR SINE MIR 37 142 -66 2305 151 50 24 chr12 31423562 31423985 -112858504 + Tigger2a DNA MER2_type 1 434 0 354 98 0 0 chr12 31424259 31424310 -112858179 + (CA)n Simple_repeat Simple_repeat 1 51 0 251 97 48 16 chr12 31424404 31424466 -112858023 + (TA)n Simple_repeat Simple_repeat 1 64 0 244 189 18 117 chr12 31425201 31425312 -112857177 - L2 LINE L2 -77 3236 3137 188 369 39 39 chr12 31426670 31426773 -112855716 + L2 LINE L2 3137 3239 -33 202 189 19 19 chr12 31427116 31427169 -112855320 + (TA)n Simple_repeat Simple_repeat 2 54 0 997 238 30 5 chr12 31427262 31427508 -112854981 - MIR SINE MIR 0 262 14 1880 146 3 13 chr12 31428592 31428893 -112853596 + AluSx SINE Alu 1 298 -14 1890 153 10 0 chr12 31429033 31429328 -112853161 + AluSx SINE Alu 1 298 -14 629 235 159 39 chr12 31429331 31429722 -112852767 + MLT1H LTR MaLR 79 527 -15 2422 74 7 0 chr12 31430165 31430474 -112852015 - AluY SINE Alu 0 311 1 546 231 34 62 chr12 31431280 31431443 -112851046 + MLT1H LTR MaLR 1 80 -450 2080 123 14 3 chr12 31431443 31431736 -112850753 + AluJb SINE Alu 1 296 -16 546 231 34 62 chr12 31431736 31431803 -112850686 + MLT1H LTR MaLR 80 147 -383 4569 225 71 16 chr12 31431941 31433271 -112849218 + L1 LINE L1 2121 3524 -2622 1373 211 4 7 chr12 31433388 31433658 -112848831 + AluJo SINE Alu 6 274 -38 2353 11 7 0 chr12 31434033 31434305 -112848184 + L1PA2 LINE L1 5881 6154 -1 412 220 66 0 chr12 31434373 31434464 -112848025 + Tigger3b DNA MER2_type 6 102 -1129 * 4666 100 144 13 chr12 31434463 31435285 -112847204 + Tigger3b DNA MER2_type 279 1207 -24 2475 90 20 0 chr12 31435897 31436243 -112846246 + L1PA13 LINE L1 5794 6146 -17 4912 147 23 50 chr12 31436258 31437347 -112845142 + L1MB3 LINE L1 5122 6182 -1 1875 180 0 0 chr12 31437940 31438234 -112844255 - AluJb SINE Alu -18 294 1 990 203 100 80 chr12 31438714 31439063 -112843426 + MER76 LTR ERV 331 686 -2 11045 174 96 14 chr12 31439087 31441757 -112840732 + L1M4c LINE L1 19 2909 -3473 399 206 21 21 chr12 31441758 31441855 -112840634 + pTR5 LTR ERV1 743 839 -1599 301 314 122 21 chr12 31442931 31443119 -112839370 - L1ME LINE L1 -282 5839 5633 22 35 0 0 chr12 31443466 31443495 -112838994 + AT_rich Low_complexity Low_complexity 1 29 0 468 293 64 6 chr12 31443499 31443656 -112838833 + HAL1 LINE L1 4 169 -2338 705 187 64 41 chr12 31443734 31443905 -112838584 + MIR SINE MIR 1 175 -87 498 224 153 90 chr12 31444021 31444244 -112838245 + MIR SINE MIR 26 262 0 187 298 133 46 chr12 31444489 31444640 -112837849 - MIR3 SINE MIR -22 186 23 23 33 0 0 chr12 31445092 31445122 -112837367 + AT_rich Low_complexity Low_complexity 1 30 0 571 233 19 92 chr12 31445769 31445975 -112836514 + L2 LINE L2 3119 3309 -4 2211 105 6 13 chr12 31446479 31446792 -112835697 + AluSx SINE Alu 1 311 -1 545 174 181 7 chr12 31446811 31446949 -112835540 - L1M4b LINE L1 -5907 952 791 1433 207 10 21 chr12 31447049 31447339 -112835150 - AluJo SINE Alu -17 295 9 1608 170 26 42 chr12 31447615 31447965 -112834524 - MSTB2 LTR MaLR -114 319 1 249 183 33 17 chr12 31448083 31448143 -112834346 - L1MC5 LINE L1 -593 7368 7308 246 143 24 24 chr12 31448144 31448186 -112834303 - Alu SINE Alu -39 260 219 846 198 172 104 chr12 31448251 31448733 -112833756 - L1MD3 LINE L1 -788 7173 6671 227 129 29 29 chr12 31448735 31448805 -112833684 + (TA)n Simple_repeat Simple_repeat 2 71 0 1037 199 5 0 chr12 31448992 31449188 -112833301 - L1PA16 LINE L1 -16 6150 5954 2198 100 0 23 chr12 31449211 31449520 -112832969 - AluSq SINE Alu -11 302 1 319 278 101 98 chr12 31449521 31449867 -112832622 - L1MC4a LINE L1 -1227 6581 6235 435 103 0 0 chr12 31449875 31449943 -112832546 + Alu SINE Alu 244 311 0 361 262 218 25 chr12 31449966 31450241 -112832248 - L1MC4a LINE L1 -1651 6157 5830 238 216 144 0 chr12 31450357 31450468 -112832021 + L1MB8 LINE L1 1500 1626 -5233 2235 108 3 0 chr12 31450468 31450764 -112831725 + AluSx SINE Alu 1 297 -15 6422 215 72 11 chr12 31450810 31451244 -112831245 + L1MB8 LINE L1 3846 4252 -2705 200 33 0 33 chr12 31451244 31451274 -112831215 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6422 215 72 11 chr12 31451274 31452790 -112829699 + L1MB8 LINE L1 4252 5914 -1043 1051 145 58 4 chr12 31452792 31453001 -112829488 + AluJb SINE Alu 1 304 -8 3342 167 140 12 chr12 31453002 31453948 -112828541 + L1MB8 LINE L1 5911 6984 -5 2350 58 0 17 chr12 31455251 31455544 -112826945 - AluY SINE Alu -23 288 1 29 0 0 0 chr12 31455838 31455867 -112826622 + AT_rich Low_complexity Low_complexity 1 29 0 1512 101 48 0 chr12 31457321 31457548 -112824941 + L1MA5A LINE L1 6038 6275 -22 2242 103 13 0 chr12 31458431 31458732 -112823757 - AluSq SINE Alu -8 305 1 623 210 108 45 chr12 31459424 31459471 -112823018 + MER58B DNA MER1_type 1 44 -297 2397 89 3 0 chr12 31459471 31459773 -112822716 - AluSp SINE Alu -10 303 1 623 210 108 45 chr12 31459773 31459901 -112822588 + MER58B DNA MER1_type 44 187 -154 2055 191 30 74 chr12 31460477 31461005 -112821484 + MLT1D LTR MaLR 1 505 0 443 255 43 35 chr12 31461384 31461525 -112820964 + LTR67 LTR ERVL 412 553 -4 1328 262 136 16 chr12 31461591 31462075 -112820414 + MLT1F LTR MaLR 1 542 0 315 278 55 7 chr12 31462321 31462505 -112819984 - MLT1G1 LTR MaLR 0 595 354 7470 32 1 1 chr12 31463229 31464254 -112818235 + L1PA4 LINE L1 5128 6152 -3 27 0 0 0 chr12 31464254 31464281 -112818208 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr12 31464320 31464340 -112818149 + (A)n Simple_repeat Simple_repeat 1 20 0 339 364 64 18 chr12 31464360 31464753 -112817736 - MLT1C LTR MaLR -8 459 49 577 246 72 58 chr12 31465036 31465312 -112817177 - L2 LINE L2 -129 3184 2905 3092 95 51 0 chr12 31465397 31465828 -112816661 - MLT2A2 LTR ERVL 0 453 1 2785 126 7 30 chr12 31465842 31466278 -112816211 + MSTB LTR MaLR 1 426 0 518 247 81 23 chr12 31466315 31466489 -112816000 + MER5A DNA MER1_type 4 187 -2 1826 45 0 18 chr12 31467491 31467711 -112814778 - AluY SINE Alu -10 301 86 203 162 0 27 chr12 31468029 31468066 -112814423 + L3 LINE CR1 1443 1478 -99 1998 126 0 68 chr12 31468131 31468457 -112814032 - AluSx SINE Alu -7 305 2 370 212 12 0 chr12 31468528 31468613 -112813876 + L1 LINE L1 5057 5142 -1004 * 3494 94 5 7 chr12 31468581 31469154 -112813335 + L1P4 LINE L1 5168 5741 -422 306 276 48 35 chr12 31470211 31470356 -112812133 - L1ME3A LINE L1 -203 5967 5821 1985 128 21 0 chr12 31470365 31470653 -112811836 - AluSx SINE Alu -16 296 3 1836 125 0 7 chr12 31470657 31470929 -112811560 - AluSx SINE Alu -9 303 34 18474 155 13 9 chr12 31470929 31471225 -112811264 + L1P LINE L1 2093 2386 -3760 2346 107 0 3 chr12 31471225 31471534 -112810955 + AluY SINE Alu 1 308 -3 18474 155 13 9 chr12 31471534 31474535 -112807954 + L1P LINE L1 2386 5403 -743 1063 112 0 0 chr12 31474535 31474678 -112807811 + LTR8 LTR ERV1 548 690 -1 6370 106 36 3 chr12 31474679 31475567 -112806922 + HUERS-P1 LTR ERV1 1 917 -5346 2393 116 9 3 chr12 31475571 31475906 -112806583 + HUERS-P1 LTR ERV1 1427 1763 -4500 862 263 54 119 chr12 31476016 31476545 -112805944 + MLT1G LTR MaLR 96 574 -16 207 220 0 0 chr12 31476595 31476645 -112805844 + (CA)n Simple_repeat Simple_repeat 1 50 0 1757 175 0 0 chr12 31477044 31477329 -112805160 + AluJo SINE Alu 1 285 -27 23 33 0 0 chr12 31477329 31477359 -112805130 + AT_rich Low_complexity Low_complexity 1 30 0 361 278 31 0 chr12 31477885 31477982 -112804507 + MIR SINE MIR 57 156 -106 530 292 42 54 chr12 31477985 31478025 -112804464 - MIR SINE MIR -16 246 207 2152 104 24 3 chr12 31478025 31478322 -112804167 - AluY SINE Alu -8 303 1 530 292 42 54 chr12 31478322 31478521 -112803968 - MIR SINE MIR -55 207 10 192 194 45 45 chr12 31478529 31478596 -112803893 + MIR SINE MIR 159 225 -37 235 160 11 43 chr12 31479535 31479629 -112802860 + GA-rich Low_complexity Low_complexity 2 92 0 2059 161 89 13 chr12 31479971 31480431 -112802058 - Charlie1 DNA MER1_type 0 2761 2267 8822 130 10 8 chr12 31480548 31481862 -112800627 - THE1A-int LTR MaLR -263 1317 1 2573 110 32 3 chr12 31481862 31482207 -112800282 - THE1A LTR MaLR 0 355 1 6905 214 25 22 chr12 31482211 31483866 -112798623 - L1 LINE L1 -2286 3860 2202 21 0 0 0 chr12 31484326 31484347 -112798142 + AT_rich Low_complexity Low_complexity 1 21 0 468 232 36 0 chr12 31484475 31484587 -112797902 - MIR SINE MIR -63 199 84 3663 80 0 0 chr12 31484743 31485195 -112797294 + L1PA5 LINE L1 5701 6152 -2 189 276 11 81 chr12 31485521 31485548 -112796941 - MIR3 SINE MIR -30 178 151 1666 135 4 12 chr12 31485548 31485807 -112796682 + AluSq SINE Alu 40 296 -17 189 276 11 81 chr12 31485807 31485866 -112796623 - MIR3 SINE MIR -57 151 98 493 278 183 6 chr12 31485944 31486124 -112796365 + MIR SINE MIR 23 234 -28 813 109 0 0 chr12 31486617 31486736 -112795753 + L1MA9 LINE L1 6189 6307 -5 1930 221 88 23 chr12 31488820 31489369 -112793120 - MER77 LTR ERV1 -8 597 38 1335 297 72 6 chr12 31489680 31490049 -112792440 - L1M4 LINE L1 -808 5338 4995 180 0 0 0 chr12 31490049 31490069 -112792420 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1335 297 72 6 chr12 31490069 31490363 -112792126 - L1M4 LINE L1 -1151 4995 4631 * 3006 247 42 36 chr12 31490358 31491575 -112790914 - L1MC3 LINE L1 -2 7806 6604 240 35 0 0 chr12 31491581 31491610 -112790879 + (TG)n Simple_repeat Simple_repeat 2 30 0 1210 246 96 38 chr12 31491616 31491982 -112790507 - MSTD LTR MaLR -9 387 1 399 287 9 43 chr12 31492110 31492225 -112790264 - MIR SINE MIR -61 147 37 360 181 65 51 chr12 31493005 31493143 -112789346 + L1MC5 LINE L1 7588 7727 -234 1432 170 0 60 chr12 31493161 31493443 -112789046 + AluSx SINE Alu 39 303 -9 455 277 10 62 chr12 31493444 31493639 -112788850 + L1MC5 LINE L1 7716 7900 -61 2205 109 0 10 chr12 31493961 31494264 -112788225 - AluSg SINE Alu -10 300 1 2951 104 10 2 chr12 31494265 31494679 -112787810 - MSTA-int LTR MaLR -1157 423 7 4015 196 11 16 chr12 31494810 31494884 -112787605 - L1 LINE L1 -1444 4702 4629 2209 125 3 0 chr12 31494884 31495195 -112787294 - AluSx SINE Alu 0 312 1 4015 196 11 16 chr12 31495195 31495967 -112786522 - L1 LINE L1 -1517 4629 3861 63 67 0 0 chr12 31496057 31496176 -112786313 + GC_rich Low_complexity Low_complexity 1 119 0 211 170 38 19 chr12 31496228 31496334 -112786155 + C-rich Low_complexity Low_complexity 1 108 0 180 0 0 0 chr12 31496585 31496605 -112785884 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2387 154 70 5 chr12 31497442 31497844 -112784645 - MSTA LTR MaLR 0 428 1 253 29 0 29 chr12 31498110 31498144 -112784345 - L1P1 LINE L1 -585 5570 5538 * 4654 54 2 1 chr12 31498142 31499067 -112783422 + L1P2 LINE L1 4826 5750 -404 1323 119 44 19 chr12 31499293 31499602 -112782887 + L1M1 LINE L1 5156 5478 -743 6243 155 30 12 chr12 31499621 31500617 -112781872 - L1M1 LINE L1 -5471 2094 1081 1477 159 0 4 chr12 31500722 31500949 -112781540 - L1P3 LINE L1 -6226 235 10 683 230 9 74 chr12 31501195 31501412 -112781077 - LTR26 LTR ERV1 0 603 401 3036 152 19 6 chr12 31501416 31501929 -112780560 - L1PA10 LINE L1 0 6168 5649 420 226 0 0 chr12 31502036 31502191 -112780298 + C-rich Low_complexity Low_complexity 1 155 0 3282 175 23 65 chr12 31502351 31503094 -112779395 + MER21-int LTR ERV1 5887 6598 0 342 0 0 0 chr12 31503154 31503192 -112779297 + (CA)n Simple_repeat Simple_repeat 1 38 0 1945 69 16 0 chr12 31503521 31503767 -112778722 + L1PA7 LINE L1 5905 6154 0 426 270 0 40 chr12 31504060 31504208 -112778281 + AluJo SINE Alu 2 143 -169 3445 191 76 78 chr12 31604565 31604799 -112677690 - MER21B-int LTR ERV1 -2312 4446 4213 2107 128 0 0 chr12 31604799 31605087 -112677402 + AluSx SINE Alu 1 288 -24 3445 191 76 78 chr12 31605087 31605777 -112676712 - MER21B-int LTR ERV1 -2545 4213 3524 456 74 0 0 chr12 31605781 31605835 -112676654 + AluSq/x SINE Alu 66 119 -193 1219 154 84 22 chr12 31605844 31606071 -112676418 + AluSx SINE Alu 55 295 -17 473 229 17 8 chr12 31606071 31606189 -112676300 + MER21-int LTR ERV1 416 534 -3657 2181 186 30 2 chr12 31606197 31606596 -112675893 - MER21B-int LTR ERV1 -3764 427 18 447 248 174 6 chr12 31606601 31606762 -112675727 - MER21B LTR ERV1 -62 801 614 1680 144 133 32 chr12 31606775 31606841 -112675648 - MSTB1 LTR MaLR 0 432 374 1689 174 10 3 chr12 31606841 31606976 -112675513 + AluJb SINE Alu 1 134 -178 2259 93 13 0 chr12 31606976 31607277 -112675212 + AluSp SINE Alu 1 305 -8 1689 174 10 3 chr12 31607277 31607435 -112675054 + AluJb SINE Alu 134 296 -16 1680 144 133 32 chr12 31607435 31607715 -112674774 - MSTB1 LTR MaLR -58 374 51 649 231 99 58 chr12 31607769 31608011 -112674478 - MER21B LTR ERV1 -283 580 329 2132 124 10 0 chr12 31608028 31608335 -112674154 - AluSx SINE Alu -2 310 1 416 275 55 44 chr12 31608338 31608557 -112673932 - L1MEd LINE L1 -2697 3432 3206 1756 176 0 16 chr12 31608557 31608864 -112673625 - AluJb SINE Alu -10 302 1 416 275 55 44 chr12 31608864 31609008 -112673481 - L1MEd LINE L1 -2923 3206 3065 312 224 0 0 chr12 31609043 31609110 -112673379 - L1MEd LINE L1 -3151 2978 2912 198 0 0 0 chr12 31609110 31609132 -112673357 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1779 168 3 3 chr12 31609132 31609417 -112673072 - AluJo SINE Alu -27 285 1 1608 127 68 55 chr12 31609754 31610046 -112672443 - AluJo SINE Alu -16 296 1 247 301 10 29 chr12 31610171 31610274 -112672215 - L1MEd LINE L1 -4751 1559 1459 671 277 52 60 chr12 31610280 31610665 -112671824 - L1MEd LINE L1 -4780 1530 1143 2232 131 0 0 chr12 31610665 31610977 -112671512 - AluSx SINE Alu 0 312 1 671 277 52 60 chr12 31610977 31611025 -112671464 - L1MEd LINE L1 -5167 1143 1096 2089 108 18 3 chr12 31611025 31611311 -112671178 - AluSc SINE Alu -19 290 1 671 277 52 60 chr12 31611311 31611416 -112671073 - L1MEd LINE L1 -5214 1096 972 2118 117 10 0 chr12 31611724 31612015 -112670474 + AluSx SINE Alu 1 294 -18 2058 123 3 16 chr12 31612526 31612836 -112669653 + AluSx SINE Alu 3 308 -4 219 285 237 24 chr12 31613004 31613211 -112669278 - L2 LINE L2 -218 3054 2804 2148 100 0 23 chr12 31613424 31613724 -112668765 + AluSq SINE Alu 1 293 -20 285 344 42 0 chr12 31613886 31613982 -112668507 - L2 LINE L2 0 3272 3173 1946 149 13 7 chr12 31614103 31614412 -112668077 - AluSx SINE Alu -1 311 1 2244 118 10 0 chr12 31614412 31614715 -112667774 - AluSq SINE Alu -6 307 1 1075 224 112 10 chr12 31615604 31615908 -112666581 + MER46C DNA MER2_type 1 335 -3 630 110 22 0 chr12 31616223 31616314 -112666175 + AluSg/x SINE Alu 210 302 -8 2148 112 3 0 chr12 31616366 31616653 -112665836 + AluSq SINE Alu 1 288 -25 1763 119 18 25 chr12 31617799 31618077 -112664412 + AluSc SINE Alu 1 276 -33 754 241 21 21 chr12 31618198 31618385 -112664104 + MLT1E1 LTR MaLR 468 654 0 508 256 111 56 chr12 31618626 31618860 -112663629 + L2 LINE L2 2996 3242 -71 341 186 0 29 chr12 31618862 31618932 -112663557 - MLT1J1 LTR MaLR -2 593 486 667 200 82 7 chr12 31618939 31619074 -112663415 - FRAM SINE Alu -12 164 20 359 178 0 0 chr12 31619104 31619163 -112663326 - Alu SINE Alu -249 53 1 207 299 37 52 chr12 31619224 31619358 -112663131 - L2 LINE L2 -919 2395 2264 936 210 194 24 chr12 31621062 31621314 -112661175 + AluJo SINE Alu 1 295 -7 1586 273 83 57 chr12 31621317 31622017 -112660472 + MER21B LTR ERV1 17 734 -129 831 69 0 0 chr12 31622092 31622193 -112660296 + HY3 scRNA scRNA 1 101 0 29 0 0 0 chr12 31622193 31622222 -112660267 + AT_rich Low_complexity Low_complexity 1 29 0 1670 171 11 18 chr12 31622368 31622654 -112659835 + AluJb SINE Alu 6 289 -23 198 0 0 0 chr12 31622655 31622677 -112659812 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2107 128 10 3 chr12 31622960 31623257 -112659232 + AluSx SINE Alu 1 299 -13 453 267 184 24 chr12 31623423 31623703 -112658786 - MLT1J1 LTR MaLR -18 428 99 1809 157 32 0 chr12 31624939 31625220 -112657269 - AluJb SINE Alu -22 290 1 2383 86 7 0 chr12 31626159 31626462 -112656027 - AluSg SINE Alu -4 306 2 1730 146 81 68 chr12 31626531 31626695 -112655794 - L1MC3 LINE L1 -32 7753 7592 2312 109 3 0 chr12 31626695 31627006 -112655483 - AluSq SINE Alu -1 312 1 1730 146 81 68 chr12 31627006 31627042 -112655447 - L1MC3 LINE L1 -193 7592 7558 2728 116 16 3 chr12 31627042 31627412 -112655077 - THE1C LTR MaLR 0 375 1 1730 146 81 68 chr12 31627412 31627620 -112654869 - L1MC3 LINE L1 -227 7558 7339 968 213 9 20 chr12 31627603 31627824 -112654665 - L1MC/D LINE L1 -2161 5624 5406 * 2041 157 7 0 chr12 31627792 31628098 -112654391 - AluSx SINE Alu -4 308 1 321 190 0 17 chr12 31628137 31628148 -112654341 - MER46A DNA MER2_type -83 153 144 476 164 14 0 chr12 31628148 31628221 -112654268 + MER46A DNA MER2_type 2 75 -161 1135 132 198 5 chr12 31628291 31628488 -112654001 + MER46A DNA MER2_type 2 236 0 2246 125 0 0 chr12 31629500 31629805 -112652684 - AluSx SINE Alu -7 305 1 1693 169 26 7 chr12 31630755 31631057 -112651432 + AluJb SINE Alu 2 309 -3 741 205 8 0 chr12 31631057 31631179 -112651310 + AluJb SINE Alu 134 256 -56 348 130 0 29 chr12 31631575 31631644 -112650845 + AluJb SINE Alu 235 301 -1 585 299 116 9 chr12 31631694 31631918 -112650571 - MIR SINE MIR 0 262 15 288 77 0 0 chr12 31632146 31632185 -112650304 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 901 197 0 0 chr12 31632185 31632332 -112650157 - AluJb SINE Alu -32 280 134 1631 223 53 27 chr12 31632332 31632367 -112650122 - L1ME1 LINE L1 -11 6155 6122 2445 81 0 0 chr12 31632367 31632662 -112649827 + AluSx SINE Alu 1 295 -17 1631 223 53 27 chr12 31632662 31633038 -112649451 - L1ME1 LINE L1 -44 6122 5733 321 188 50 40 chr12 31633043 31633144 -112649345 - LTR41 LTR ERVL -16 757 656 1581 147 0 19 chr12 31633144 31633402 -112649087 + AluJb SINE Alu 11 263 -49 595 111 0 0 chr12 31634425 31634506 -112647983 + U5 snRNA snRNA 1 81 -35 2170 117 0 7 chr12 31634514 31634813 -112647676 - AluSc SINE Alu -12 297 1 12090 144 25 31 chr12 31634813 31636164 -112646325 - L1MA3 LINE L1 -354 5951 4593 1936 146 0 0 chr12 31636164 31636444 -112646045 - AluSx SINE Alu -32 280 1 12090 144 25 31 chr12 31636444 31637919 -112644570 - L1MA3 LINE L1 -1712 4593 3059 2195 125 0 6 chr12 31637919 31638230 -112644259 - AluSx SINE Alu -3 309 1 12090 144 25 31 chr12 31638230 31638659 -112643830 - L1MA3 LINE L1 -3246 3059 2629 270 241 0 0 chr12 31638776 31638830 -112643659 + MIR SINE MIR 206 259 -3 254 247 0 56 chr12 31639256 31639345 -112643144 + CT-rich Low_complexity Low_complexity 6 89 0 1877 139 60 117 chr12 31639515 31639585 -112642904 - MSTB1 LTR MaLR 0 432 360 1632 147 17 51 chr12 31639585 31639878 -112642611 + AluJo SINE Alu 1 283 -29 1877 139 60 117 chr12 31639878 31640260 -112642229 - MSTB1 LTR MaLR -72 360 6 26 50 0 0 chr12 31641542 31641582 -112640907 + AT_rich Low_complexity Low_complexity 1 40 0 2324 224 97 48 chr12 31642045 31642589 -112639900 + L2 LINE L2 2022 2538 -775 2350 97 10 6 chr12 31642589 31642900 -112639589 - AluSx SINE Alu 0 312 1 2324 224 97 48 chr12 31642900 31643449 -112639040 + L2 LINE L2 2538 3185 -128 1824 159 51 21 chr12 31643449 31643783 -112638706 - MER2 DNA MER2_type 0 344 1 2324 224 97 48 chr12 31643783 31643917 -112638572 + L2 LINE L2 3185 3311 -2 224 333 0 38 chr12 31644608 31644791 -112637698 + CT-rich Low_complexity Low_complexity 3 178 0 * 401 306 0 0 chr12 31644663 31644833 -112637656 + T-rich Low_complexity Low_complexity 1 170 0 182 214 255 90 chr12 31645287 31645432 -112637057 + MIR3 SINE MIR 1 169 -39 1302 216 70 43 chr12 31645546 31645875 -112636614 - MER2 DNA MER2_type -1 344 7 2396 80 10 3 chr12 31645991 31646290 -112636199 - AluSx SINE Alu -11 301 1 868 137 0 0 chr12 31647196 31647313 -112635176 + FLAM_C SINE Alu 1 117 -26 29 0 0 0 chr12 31647321 31647350 -112635139 + AT_rich Low_complexity Low_complexity 1 29 0 2203 102 14 0 chr12 31648273 31648568 -112633921 + AluSx SINE Alu 9 307 -5 24 0 0 0 chr12 31649126 31649150 -112633339 + AT_rich Low_complexity Low_complexity 1 24 0 2401 86 0 0 chr12 31649368 31649670 -112632819 - AluSx SINE Alu -10 302 1 929 288 152 32 chr12 31649695 31650230 -112632259 + L2 LINE L2 2726 3313 0 1709 147 7 20 chr12 31650448 31650740 -112631749 + AluSx SINE Alu 20 307 -5 650 148 41 163 chr12 31650759 31650955 -112631534 - LTR54 LTR ERV1 -193 317 146 3240 145 32 0 chr12 31651040 31651536 -112630953 + MER41E LTR ERV1 1 512 0 761 156 28 14 chr12 31651540 31651681 -112630808 - LTR54 LTR ERV1 -367 143 1 187 264 44 77 chr12 31651725 31651816 -112630673 - MIR SINE MIR -12 250 163 454 56 169 0 chr12 31651827 31651898 -112630591 - MER21A LTR ERV1 -27 904 822 865 185 17 29 chr12 31651901 31652074 -112630415 + AluJb SINE Alu 119 289 -23 1301 165 91 8 chr12 31652131 31652374 -112630115 - MER21B LTR ERV1 -138 725 463 873 145 8 0 chr12 31652375 31652506 -112629983 + AluSg/x SINE Alu 146 277 -33 192 77 0 0 chr12 31652506 31652532 -112629957 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 2220 102 0 0 chr12 31652533 31652817 -112629672 + AluSc SINE Alu 1 284 -25 2525 162 73 7 chr12 31652824 31653263 -112629226 - MER21B LTR ERV1 -395 468 1 186 143 0 0 chr12 31653292 31653320 -112629169 - MIR SINE MIR -63 145 118 1381 165 43 18 chr12 31655619 31655898 -112626591 - AluJb SINE Alu -26 286 1 1875 176 0 13 chr12 31656210 31656522 -112625967 - AluSx SINE Alu -4 308 1 583 179 0 0 chr12 31656779 31656874 -112625615 + L1MB5 LINE L1 6080 6174 0 198 0 0 0 chr12 31657201 31657223 -112625266 + (T)n Simple_repeat Simple_repeat 1 22 0 470 250 83 23 chr12 31657379 31657511 -112624978 + MLT1H LTR MaLR 101 240 -309 2094 106 0 11 chr12 31657529 31657811 -112624678 + AluSx SINE Alu 1 279 -33 198 174 0 0 chr12 31657845 31657891 -112624598 + A-rich Low_complexity Low_complexity 1 46 0 1755 227 122 13 chr12 31658093 31658691 -112623798 + L1MD3 LINE L1 5343 6005 -1990 * 2254 179 67 12 chr12 31658350 31658859 -112623630 + L1MB8 LINE L1 5642 6178 0 1563 192 3 10 chr12 31658869 31659160 -112623329 + AluJb SINE Alu 1 289 -23 2106 119 3 23 chr12 31659757 31660060 -112622429 + AluSx SINE Alu 1 297 -15 1506 174 60 28 chr12 31660075 31660357 -112622132 + AluJo SINE Alu 3 293 -19 989 187 0 0 chr12 31660382 31660532 -112621957 + FRAM SINE Alu 1 150 -16 21 82 0 0 chr12 31660561 31660610 -112621879 + AT_rich Low_complexity Low_complexity 1 49 0 1693 163 30 20 chr12 31661426 31661721 -112620768 + AluJb SINE Alu 5 302 -10 862 200 0 39 chr12 31662004 31662184 -112620305 + AluJb SINE Alu 129 301 -11 290 267 91 79 chr12 31663479 31663644 -112618845 - MIR3 SINE MIR -11 197 31 1083 105 23 18 chr12 31664998 31665169 -112617320 - L1MB7 LINE L1 0 6184 6013 1998 206 19 45 chr12 31665961 31666432 -112616057 - MLT1C LTR MaLR -3 464 6 2058 131 3 3 chr12 31666527 31666817 -112615672 - AluSx SINE Alu -18 294 5 231 278 28 9 chr12 31666903 31667011 -112615478 + L1MC4 LINE L1 7933 8042 0 773 186 0 0 chr12 31667812 31667936 -112614553 - AluJ SINE Alu -1 311 188 1371 33 0 0 chr12 31667973 31668124 -112614365 - L1PA3 LINE L1 -3 6152 6002 2495 72 7 3 chr12 31668127 31668669 -112613820 - LTR10E LTR ERV1 -12 621 1 1185 176 0 0 chr12 31668671 31668859 -112613630 - AluJ SINE Alu -120 192 5 21 57 0 0 chr12 31668919 31668954 -112613535 + AT_rich Low_complexity Low_complexity 1 35 0 669 202 17 0 chr12 31668954 31669073 -112613416 - FLAM_C SINE Alu -11 122 2 2384 183 36 5 chr12 31669255 31669676 -112612813 - Tigger2a DNA MER2_type 0 434 1 2420 89 0 16 chr12 31669705 31670020 -112612469 - AluSq SINE Alu -3 310 1 736 164 9 0 chr12 31670020 31670136 -112612353 - FLAM_A SINE Alu -12 130 14 628 188 0 62 chr12 31670169 31670297 -112612192 + FLAM_C SINE Alu 10 129 -14 1041 151 6 18 chr12 31670331 31670497 -112611992 + AluSx SINE Alu 1 164 -148 1552 184 21 7 chr12 31672221 31672504 -112609985 - AluJb SINE Alu -21 291 5 22 35 0 0 chr12 31672597 31672626 -112609863 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 31672843 31672875 -112609614 + AT_rich Low_complexity Low_complexity 1 32 0 2301 98 0 3 chr12 31673689 31673984 -112608505 - AluSg SINE Alu -16 294 1 994 181 11 28 chr12 31674119 31674296 -112608193 - FAM SINE Alu 0 175 2 428 313 27 80 chr12 31674296 31674520 -112607969 + MIR SINE MIR 18 229 -33 755 177 0 21 chr12 31674775 31674916 -112607573 - AluSg/x SINE Alu 0 309 172 32 0 0 0 chr12 31674959 31674991 -112607498 + AT_rich Low_complexity Low_complexity 1 32 0 79 12 0 0 chr12 31675001 31675087 -112607402 + GC_rich Low_complexity Low_complexity 1 86 0 22 0 0 0 chr12 31675129 31675151 -112607338 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr12 31675151 31675172 -112607317 + (G)n Simple_repeat Simple_repeat 1 21 0 270 0 0 0 chr12 31675184 31675214 -112607275 + (T)n Simple_repeat Simple_repeat 1 30 0 28 33 0 0 chr12 31675223 31675253 -112607236 + GC_rich Low_complexity Low_complexity 1 30 0 24 39 0 0 chr12 31675276 31675302 -112607187 + AT_rich Low_complexity Low_complexity 1 26 0 245 62 0 0 chr12 31675332 31675364 -112607125 + (G)n Simple_repeat Simple_repeat 1 32 0 4809 111 36 30 chr12 31675584 31675851 -112606638 - L1M1 LINE L1 -5128 2437 2173 2620 137 41 12 chr12 31675851 31676267 -112606222 - MSTA LTR MaLR 0 428 1 4809 111 36 30 chr12 31676267 31676657 -112605832 - L1M1 LINE L1 -5392 2173 1772 330 87 0 0 chr12 31676657 31676703 -112605786 + (TG)n Simple_repeat Simple_repeat 2 47 0 4809 111 36 30 chr12 31676703 31676811 -112605678 - L1M1 LINE L1 -5793 1772 1666 1290 123 0 0 chr12 31677009 31677188 -112605301 - AluSg/x SINE Alu -1 309 131 1834 94 0 80 chr12 31677667 31677955 -112604534 + AluSx SINE Alu 36 300 -12 464 242 96 35 chr12 31678731 31678929 -112603560 + MER2 DNA MER2_type 136 345 0 367 327 103 49 chr12 31679270 31679619 -112602870 + L2 LINE L2 2338 2705 -609 239 290 29 82 chr12 31679975 31680182 -112602307 + L2 LINE L2 3117 3312 -1 1211 152 5 33 chr12 31680633 31680843 -112601646 - AluJo SINE Alu -108 204 1 1682 136 31 8 chr12 31681023 31681281 -112601208 + L1PA16 LINE L1 5901 6164 -2 414 236 60 51 chr12 31681488 31681763 -112600726 - L1MC5 LINE L1 -463 7498 7261 324 248 51 29 chr12 31681766 31681903 -112600586 - L1M4 LINE L1 -914 5232 5093 1854 162 0 10 chr12 31681930 31682226 -112600263 + AluJb SINE Alu 1 293 -19 21 104 0 0 chr12 31682260 31682337 -112600152 + AT_rich Low_complexity Low_complexity 1 77 0 2048 121 21 0 chr12 31682346 31682627 -112599862 - AluSx SINE Alu -25 287 1 1095 151 0 49 chr12 31683301 31683486 -112599003 - AluJb SINE Alu -24 288 113 1660 174 3 7 chr12 31683555 31683837 -112598652 - AluJb SINE Alu -27 285 5 2373 104 31 6 chr12 31683854 31684209 -112598280 - L1MA2 LINE L1 0 6304 5941 1837 164 0 13 chr12 31684209 31684513 -112597976 - AluSx SINE Alu -12 300 1 24 0 0 0 chr12 31684674 31684698 -112597791 + AT_rich Low_complexity Low_complexity 1 24 0 368 264 22 0 chr12 31687232 31687323 -112595166 - MIR SINE MIR -169 93 1 772 98 46 23 chr12 31687340 31687513 -112594976 + CT-rich Low_complexity Low_complexity 2 178 0 1572 140 15 143 chr12 31687527 31687752 -112594737 - AluJo SINE Alu -3 299 131 2476 87 0 0 chr12 31687752 31688063 -112594426 - AluY SINE Alu 0 311 1 1572 140 15 143 chr12 31688063 31688179 -112594310 - AluJo SINE Alu -171 131 2 629 237 98 48 chr12 31688496 31688743 -112593746 + MLT1H1 LTR MaLR 42 281 -261 762 145 72 51 chr12 31689241 31689379 -112593110 - FLAM_C SINE Alu -1 142 2 2034 139 3 7 chr12 31689557 31689859 -112592630 - AluSx SINE Alu -11 301 1 42 57 0 0 chr12 31689868 31689921 -112592568 + AT_rich Low_complexity Low_complexity 1 53 0 683 208 81 0 chr12 31689921 31690094 -112592395 - AluY SINE Alu -17 294 108 799 167 97 14 chr12 31691530 31691674 -112590815 - FRAM SINE Alu -10 156 1 207 0 0 0 chr12 31691753 31691776 -112590713 + (T)n Simple_repeat Simple_repeat 1 23 0 1583 131 0 13 chr12 31691984 31692213 -112590276 + AluJb SINE Alu 76 301 -11 313 275 67 34 chr12 31692233 31692255 -112590234 - HAL1b LINE L1 -2 1346 1325 469 283 80 74 chr12 31692255 31692768 -112589721 - L1ME4a LINE L1 -34 6087 1193 456 114 0 102 chr12 31692906 31692994 -112589495 - FLAM_C SINE Alu -2 141 63 263 150 0 0 chr12 31693087 31693127 -112589362 + AluSx SINE Alu 2 41 -262 241 328 0 0 chr12 31694039 31694097 -112588392 + Tigger3(Golem) DNA MER2_type 1 58 -2971 764 144 23 45 chr12 31694099 31694231 -112588258 + Tigger3(Golem) DNA MER2_type 2887 3015 -14 207 161 0 0 chr12 31694231 31694262 -112588227 + polypyrimidine Low_complexity Low_complexity 2 32 0 278 378 27 18 chr12 31694263 31694374 -112588115 - L2 LINE L2 -25 3247 3136 437 322 147 35 chr12 31694541 31695193 -112587296 - L2 LINE L2 -1 3312 2291 1820 168 3 3 chr12 31695286 31695583 -112586906 + AluJb SINE Alu 1 297 -15 1569 136 21 4 chr12 31696170 31696413 -112586076 + AluSx SINE Alu 43 289 -23 237 117 50 17 chr12 31696475 31696535 -112585954 + GA-rich Low_complexity Low_complexity 4 65 0 1570 174 45 17 chr12 31697390 31697678 -112584811 + AluJo SINE Alu 1 296 -16 2566 52 0 3 chr12 31698295 31698600 -112583889 - AluY SINE Alu -7 304 1 2166 169 22 14 chr12 31700737 31701099 -112581390 + MLT1A1 LTR MaLR 1 365 0 1378 222 67 0 chr12 31701234 31701351 -112581138 + AluJb SINE Alu 1 109 -203 282 29 0 0 chr12 31701351 31701386 -112581103 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1378 222 67 0 chr12 31701386 31701552 -112580937 + AluJb SINE Alu 109 303 -9 1244 122 0 0 chr12 31701578 31701750 -112580739 + AluSg/x SINE Alu 138 309 -1 944 181 6 17 chr12 31702027 31702204 -112580285 - FRAM SINE Alu -5 171 1 264 179 128 39 chr12 31702281 31702359 -112580130 + L2 LINE L2 3229 3313 0 1055 164 0 0 chr12 31702674 31702839 -112579650 - FRAM SINE Alu -2 174 10 324 339 0 16 chr12 31702839 31702966 -112579523 - L2 LINE L2 -567 2747 2623 710 79 0 0 chr12 31702966 31703055 -112579434 - AluSg/x SINE Alu -10 299 211 1088 163 0 0 chr12 31703179 31703345 -112579144 - AluJb SINE Alu -14 298 133 586 154 10 19 chr12 31703376 31703480 -112579009 - MER65A LTR ERV1 0 445 343 299 213 53 75 chr12 31703548 31703642 -112578847 - AluSg/x SINE Alu -81 221 130 1104 201 18 14 chr12 31704517 31704736 -112577753 + AluJo SINE Alu 1 220 -92 349 56 19 74 chr12 31704737 31704791 -112577698 + AluSg/x SINE Alu 85 131 -169 2239 92 10 7 chr12 31704832 31705136 -112577353 + AluSc SINE Alu 1 305 -4 184 331 71 55 chr12 31705241 31705368 -112577121 + L2 LINE L2 3139 3267 -5 2161 110 16 13 chr12 31705460 31705770 -112576719 + AluSx SINE Alu 1 311 -1 2391 92 0 3 chr12 31705822 31706128 -112576361 + AluSx SINE Alu 1 305 -7 1214 106 6 0 chr12 31706589 31706749 -112575740 - AluSq SINE Alu -18 295 135 2084 132 7 7 chr12 31707020 31707324 -112575165 + AluSx SINE Alu 1 304 -8 373 227 114 0 chr12 31707324 31707412 -112575077 - LTR54 LTR ERV1 -38 472 375 1452 117 5 19 chr12 31707620 31707833 -112574656 - AluSx SINE Alu -102 210 1 326 234 211 0 chr12 31708284 31708412 -112574077 - MIR SINE MIR -76 186 32 2091 130 7 7 chr12 31709062 31709369 -112573120 - AluSx SINE Alu -5 307 1 1023 104 0 0 chr12 31709370 31709504 -112572985 - AluSq/x SINE Alu -179 134 1 206 303 131 20 chr12 31709663 31709762 -112572727 - MIR3 SINE MIR -95 113 4 689 205 0 8 chr12 31710366 31710493 -112571996 + AluJo SINE Alu 85 210 -102 2476 232 94 49 chr12 31711253 31712190 -112570299 + L2 LINE L2 2111 3088 -225 787 211 0 0 chr12 31712603 31712736 -112569753 + FLAM_A SINE Alu 1 133 0 272 193 70 0 chr12 31712972 31713029 -112569460 - L2 LINE L2 -4 3268 3208 281 236 11 45 chr12 31713173 31713262 -112569227 - L2 LINE L2 -2 3311 3226 19031 31 3 3 chr12 31713614 31715898 -112566591 - L1P LINE L1 -1534 4612 2328 2036 136 0 7 chr12 31716068 31716369 -112566120 - AluSg1 SINE Alu -10 299 1 2572 55 0 7 chr12 31716439 31716746 -112565743 - AluY SINE Alu -6 305 1 2118 131 3 0 chr12 31717366 31717672 -112564817 + AluSg SINE Alu 1 307 -3 2229 114 0 3 chr12 31717674 31717972 -112564517 + AluSx SINE Alu 1 297 -15 548 192 186 21 chr12 31717980 31718250 -112564239 + MLT1G LTR MaLR 1 306 -284 234 295 39 0 chr12 31718349 31718427 -112564062 + MLT1G LTR MaLR 411 491 -58 1451 211 11 4 chr12 31718429 31718694 -112563795 + Tigger4(Zombi) DNA MER2_type 2 268 -2463 239 128 0 0 chr12 31718696 31718735 -112563754 + Tigger4(Zombi) DNA MER2_type 2510 2548 -183 1732 146 19 41 chr12 31719901 31720217 -112562272 + AluSx SINE Alu 1 309 -3 1090 185 0 0 chr12 31720218 31720391 -112562098 + AluJb SINE Alu 134 306 -6 1920 121 0 27 chr12 31720394 31720692 -112561797 + AluSx SINE Alu 1 290 -22 244 138 0 35 chr12 31720703 31720761 -112561728 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 1735 148 10 61 chr12 31720829 31721139 -112561350 + AluJo SINE Alu 1 294 -18 2164 105 0 10 chr12 31721657 31721953 -112560536 + AluSc SINE Alu 1 293 -16 309 164 0 0 chr12 31721953 31722006 -112560483 + Charlie5 DNA MER1_type 2558 2613 -11 692 96 0 10 chr12 31722370 31722474 -112560015 - HSMAR1 DNA Mariner -1184 103 1 472 204 41 10 chr12 31722474 31722572 -112559917 + MER58B DNA MER1_type 241 341 0 382 281 116 0 chr12 31722572 31722691 -112559798 - MLT1G1 LTR MaLR -443 152 20 1203 222 102 177 chr12 31722695 31723110 -112559379 - L2 LINE L2 -313 3000 2551 834 181 0 0 chr12 31723110 31723243 -112559246 + FRAM SINE Alu 36 168 -8 1203 222 102 177 chr12 31723243 31723615 -112558874 - L2 LINE L2 -762 2551 2153 354 293 28 9 chr12 31723634 31723740 -112558749 - L2 LINE L2 -2767 547 440 607 275 144 45 chr12 31724007 31724533 -112557956 + L2 LINE L2 2711 3271 -1 318 318 9 9 chr12 31725207 31725314 -112557175 - MIR SINE MIR -69 139 33 351 270 212 61 chr12 31726509 31726938 -112555551 + L1M2 LINE L1 802 1295 -5554 28 29 0 0 chr12 31727088 31727123 -112555366 + GC_rich Low_complexity Low_complexity 1 35 0 601 275 48 39 chr12 31727396 31727625 -112554864 + L1MC4 LINE L1 7443 7673 -369 1419 208 145 28 chr12 31727633 31728060 -112554429 - MLT1D LTR MaLR 0 505 29 1136 260 92 52 chr12 31728060 31728449 -112554040 - L2 LINE L2 -701 2613 2204 2276 93 6 6 chr12 31728449 31728760 -112553729 + AluSq SINE Alu 1 311 -2 1136 260 92 52 chr12 31728760 31728793 -112553696 - L2 LINE L2 -1110 2204 2174 894 114 76 0 chr12 31729122 31729253 -112553236 + AluJb SINE Alu 1 141 -171 47 0 0 0 chr12 31729270 31729317 -112553172 + AT_rich Low_complexity Low_complexity 1 47 0 2409 102 5 18 chr12 31729604 31730128 -112552361 - L1PA10 LINE L1 0 6168 5570 7945 32 5 1 chr12 31730141 31731629 -112550860 - L1PA4 LINE L1 -3 6152 4662 1095 128 7 0 chr12 31731730 31731879 -112550610 - AluSq/x SINE Alu -163 150 1 35 24 0 0 chr12 31731888 31731930 -112550559 + AT_rich Low_complexity Low_complexity 1 42 0 2323 82 7 7 chr12 31731930 31732235 -112550254 - AluY SINE Alu -6 305 1 645 297 87 45 chr12 31732317 31732674 -112549815 - MLT1K LTR MaLR -18 570 199 1685 162 13 10 chr12 31733172 31733481 -112549008 - AluSx SINE Alu -2 310 1 24 0 0 0 chr12 31733528 31733552 -112548937 + AT_rich Low_complexity Low_complexity 1 24 0 1469 184 43 16 chr12 31733585 31733889 -112548600 + AluJb SINE Alu 1 312 0 958 263 4 23 chr12 31734388 31734647 -112547842 - AluJo SINE Alu -31 281 28 16296 44 8 4 chr12 31735045 31737025 -112545464 - L1P LINE L1 -4158 1988 1 1169 179 37 5 chr12 31737026 31737244 -112545245 - AluSg/x SINE Alu -14 296 72 2412 81 0 3 chr12 31738309 31738617 -112543872 - AluSg SINE Alu -3 307 1 22 56 0 0 chr12 31738857 31738893 -112543596 + AT_rich Low_complexity Low_complexity 1 36 0 787 185 15 0 chr12 31739539 31739669 -112542820 + FLAM_C SINE Alu 2 133 0 1653 180 17 0 chr12 31740328 31740617 -112541872 + AluJb SINE Alu 5 298 -14 526 226 0 0 chr12 31740711 31740813 -112541676 - U13 snRNA snRNA -2 102 1 2451 69 7 7 chr12 31740952 31741258 -112541231 + AluY SINE Alu 1 306 -5 631 200 9 0 chr12 31741480 31741590 -112540899 + MER41C LTR ERV1 331 441 -113 1821 171 3 3 chr12 31741590 31741895 -112540594 - AluSx SINE Alu -7 305 1 7482 102 5 19 chr12 31741895 31742265 -112540224 + HSMAR1 DNA Mariner 208 582 -705 1952 125 14 4 chr12 31742265 31742583 -112539906 + AluSx SINE Alu 1 321 0 7482 102 5 19 chr12 31742583 31743237 -112539252 + HSMAR1 DNA Mariner 582 1220 -67 271 208 0 56 chr12 31743556 31743628 -112538861 + MIR3 SINE MIR 133 200 -8 2395 80 7 0 chr12 31743967 31744268 -112538221 + AluSq SINE Alu 6 308 -5 290 296 19 105 chr12 31744839 31744915 -112537574 + MIR SINE MIR 73 129 -133 2261 97 0 7 chr12 31744915 31745213 -112537276 + AluSg SINE Alu 1 296 -14 290 296 19 105 chr12 31745213 31745298 -112537191 + MIR SINE MIR 129 220 -42 2191 107 3 3 chr12 31745298 31745596 -112536893 + AluSq SINE Alu 1 298 -15 2126 117 21 0 chr12 31745609 31745900 -112536589 + AluSg SINE Alu 1 297 -13 397 265 0 80 chr12 31745933 31746084 -112536405 + L1MC5 LINE L1 7751 7889 -72 22 0 0 0 chr12 31746692 31746714 -112535775 + GC_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr12 31746930 31746963 -112535526 + AT_rich Low_complexity Low_complexity 1 33 0 751 167 0 0 chr12 31746963 31747083 -112535406 - FLAM_C SINE Alu -22 121 2 297 0 0 0 chr12 31747199 31747232 -112535257 + (CA)n Simple_repeat Simple_repeat 2 34 0 1054 201 0 0 chr12 31747233 31747397 -112535092 - FAM SINE Alu -11 164 1 1699 178 0 23 chr12 31747408 31747711 -112534778 - AluJb SINE Alu -16 296 1 278 258 106 68 chr12 31747741 31747873 -112534616 - MIR SINE MIR -62 146 15 1242 183 62 5 chr12 31748222 31748446 -112534043 - AluJb SINE Alu -75 237 1 381 164 16 0 chr12 31748477 31748538 -112533951 - MLT1F LTR MaLR -480 62 1 1716 147 3 7 chr12 31748683 31749018 -112533471 + AluJb SINE Alu 1 334 0 330 224 13 13 chr12 31749468 31749544 -112532945 - Tigger3(Golem) DNA MER2_type -78 2951 2876 1879 149 0 33 chr12 31749637 31749938 -112532551 + AluJo SINE Alu 7 297 -15 2951 152 173 111 chr12 31749938 31750351 -112532138 + L1MC3 LINE L1 6657 7043 -742 231 319 0 32 chr12 31750351 31750445 -112532044 + MLT1F1 LTR MaLR 35 125 -442 2951 152 173 111 chr12 31750445 31750985 -112531504 + L1MC3 LINE L1 7043 7768 -17 590 113 10 0 chr12 31751483 31751580 -112530909 + (TCTA)n Simple_repeat Simple_repeat 2 99 0 315 0 0 0 chr12 31751580 31751615 -112530874 + (CCTA)n Simple_repeat Simple_repeat 1 35 0 653 228 0 0 chr12 31751615 31751729 -112530760 - FLAM_A SINE Alu -23 119 6 4549 103 44 8 chr12 31751770 31752382 -112530107 + MER51A LTR ERV1 1 634 0 240 321 18 55 chr12 31752596 31752705 -112529784 + MIR SINE MIR 25 129 -79 830 261 22 35 chr12 31752888 31752911 -112529578 + MER58A DNA MER1_type 1 23 -2397 1397 216 18 85 chr12 31752911 31753300 -112529189 + MLT1A1 LTR MaLR 1 363 -2 830 261 22 35 chr12 31753300 31753502 -112528987 + MER58A DNA MER1_type 23 223 -1 220 364 30 10 chr12 31753562 31753661 -112528828 + L2 LINE L2 2995 3095 -218 1875 149 6 16 chr12 31754251 31754566 -112527923 + AluSx SINE Alu 1 312 0 459 287 83 33 chr12 31754852 31755033 -112527456 - MIR SINE MIR -72 190 1 1001 167 11 17 chr12 31757038 31757212 -112525277 + FAM SINE Alu 1 173 -2 855 219 56 7 chr12 31757212 31757482 -112525007 + AluJb SINE Alu 7 289 -23 276 132 208 0 chr12 31757514 31757620 -112524869 + FLAM_C SINE Alu 1 128 -5 1681 160 28 25 chr12 31758113 31758395 -112524094 - AluJb SINE Alu -29 283 1 2012 153 0 6 chr12 31758424 31758738 -112523751 + AluSx SINE Alu 1 312 0 31 0 0 0 chr12 31759229 31759260 -112523229 + AT_rich Low_complexity Low_complexity 1 31 0 298 193 11 11 chr12 31759417 31759505 -112522984 + CT-rich Low_complexity Low_complexity 3 90 0 229 230 176 54 chr12 31759976 31760050 -112522439 + L2 LINE L2 3190 3272 0 22 56 0 0 chr12 31760159 31760195 -112522294 + AT_rich Low_complexity Low_complexity 1 36 0 2242 87 28 0 chr12 31760212 31760499 -112521990 - AluSg SINE Alu -10 300 6 1560 179 0 58 chr12 31760513 31760821 -112521668 - AluJo SINE Alu -22 290 1 481 114 130 23 chr12 31761048 31761179 -112521310 - L1MC3 LINE L1 0 7785 7641 253 279 25 13 chr12 31761303 31761382 -112521107 - L2 LINE L2 -670 2644 2565 802 159 0 36 chr12 31761689 31761827 -112520662 + FLAM_A SINE Alu 1 133 0 575 211 163 13 chr12 31762047 31762227 -112520262 + MER33 DNA MER1_type 1 195 -80 263 238 41 25 chr12 31762315 31762437 -112520052 + AluYb8 SINE Alu 18 141 -167 281 236 11 45 chr12 31762708 31762797 -112519692 + L2 LINE L2 3226 3311 -2 365 215 92 33 chr12 31762859 31763105 -112519384 + MLT1G LTR MaLR 28 306 -284 1841 130 0 0 chr12 31763143 31763397 -112519092 + AluSx SINE Alu 41 294 -18 717 151 124 0 chr12 31763498 31763683 -112518806 - THE1B LTR MaLR -1 363 156 2471 197 84 14 chr12 31863909 31865135 -112417354 - L1PBa LINE L1 -5069 1794 303 2372 102 0 0 chr12 31865135 31865438 -112417051 - AluSg SINE Alu -7 303 1 2471 197 84 14 chr12 31865438 31865643 -112416846 - L1PBa LINE L1 -6560 303 114 21 0 0 0 chr12 31865703 31865724 -112416765 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 31865784 31865819 -112416670 + AT_rich Low_complexity Low_complexity 1 35 0 248 324 29 19 chr12 31866680 31866785 -112415704 + MIR SINE MIR 37 142 -66 2283 151 50 24 chr12 31868519 31868942 -112413547 + Tigger2a DNA MER2_type 1 434 0 390 91 0 0 chr12 31869216 31869271 -112413218 + (CA)n Simple_repeat Simple_repeat 1 55 0 251 97 48 16 chr12 31869365 31869427 -112413062 + (TA)n Simple_repeat Simple_repeat 1 64 0 246 189 18 117 chr12 31870164 31870275 -112412214 - L2 LINE L2 -77 3236 3137 187 369 39 39 chr12 31871638 31871741 -112410748 + L2 LINE L2 3137 3239 -33 202 189 19 19 chr12 31872084 31872137 -112410352 + (TA)n Simple_repeat Simple_repeat 1 53 0 990 238 30 5 chr12 31872229 31872475 -112410014 - MIR SINE MIR 0 262 14 395 325 57 64 chr12 31872594 31872859 -112409630 + L3 LINE CR1 1216 1478 -99 2025 126 0 68 chr12 31872924 31873250 -112409239 - AluSx SINE Alu -7 305 2 4642 153 24 51 chr12 31873320 31873374 -112409115 + L1MB3 LINE L1 5056 5110 -1073 6303 89 8 2 chr12 31873374 31874346 -112408143 + L1PA13 LINE L1 5168 6146 -17 4642 153 24 51 chr12 31874346 31875450 -112407039 + L1MB3 LINE L1 5110 6182 -1 1906 180 0 0 chr12 31876043 31876337 -112406152 - AluJb SINE Alu -18 294 1 898 201 100 80 chr12 31876818 31877167 -112405322 + MER76 LTR ERV 331 686 -2 10298 174 96 15 chr12 31877191 31879861 -112402628 + L1M4c LINE L1 19 2909 -3473 2573 176 16 26 chr12 31879862 31880470 -112402019 + pTR5 LTR ERV1 743 1344 -1094 4264 123 15 126 chr12 31880486 31881408 -112401081 + LTR12 LTR ERV1 5 824 -2 636 266 76 11 chr12 31881412 31881687 -112400802 + L1M4c LINE L1 2914 3206 -3176 315 169 56 14 chr12 31881905 31881976 -112400513 + L1M4c LINE L1 3207 3280 -3102 * 1762 223 14 7 chr12 31881969 31882396 -112400093 + L1M4c LINE L1 3525 3954 -2428 433 115 44 133 chr12 31882808 31882921 -112399568 - MER53 DNA DNA -82 107 5 1630 233 45 31 chr12 31883751 31884240 -112398249 + L2 LINE L2 1557 2052 -1262 499 252 85 94 chr12 31884269 31884741 -112397748 - MLT1H LTR MaLR -19 530 1 655 176 17 25 chr12 31884800 31884919 -112397570 - FLAM_A SINE Alu -12 121 4 2565 261 101 18 chr12 31884931 31885990 -112396499 + L2 LINE L2 2074 3220 -93 331 277 75 75 chr12 31886085 31886367 -112396122 - MLT1J LTR MaLR 0 511 230 1934 126 3 11 chr12 31886661 31886947 -112395542 + AluSq SINE Alu 1 284 -29 984 219 44 133 chr12 31887346 31887866 -112394623 + L1MC4 LINE L1 7138 7611 -431 1247 199 25 21 chr12 31887866 31888107 -112394382 + Charlie1a DNA MER1_type 1 242 -1213 1662 157 44 7 chr12 31888127 31888421 -112394068 - L1MA3 LINE L1 0 6305 6001 252 62 21 62 chr12 31888658 31888706 -112393783 + AluSc SINE Alu 254 299 0 744 240 20 0 chr12 31888714 31888864 -112393625 + MER58B DNA MER1_type 189 341 0 1640 172 35 14 chr12 31888941 31889231 -112393258 - AluJb SINE Alu -16 296 1 232 263 32 63 chr12 31891194 31891289 -112391200 + MIR SINE MIR 164 255 -7 3008 214 34 20 chr12 31891300 31891982 -112390507 - Charlie1 DNA MER1_type -473 2288 1598 354 259 62 0 chr12 31891953 31892034 -112390455 - Charlie1 DNA MER1_type -2664 97 12 * 997 105 20 0 chr12 31892035 31892187 -112390302 + L1MA2 LINE L1 5869 6023 -281 194 129 0 0 chr12 31892210 31892241 -112390248 + (C)n Simple_repeat Simple_repeat 1 31 0 1558 143 49 52 chr12 31892590 31892897 -112389592 - AluSx SINE Alu -6 306 1 2280 89 0 13 chr12 31892925 31893229 -112389260 + AluY SINE Alu 1 300 -11 2377 96 0 0 chr12 31893296 31893599 -112388890 + AluSq SINE Alu 1 303 -10 2254 103 13 0 chr12 31894338 31894638 -112387851 + AluSq SINE Alu 1 304 -9 209 326 11 43 chr12 31895252 31895306 -112387183 - MIR3 SINE MIR -2 206 155 604 233 85 28 chr12 31895306 31895482 -112387007 - MER5A DNA MER1_type 0 189 4 209 326 11 43 chr12 31895482 31895519 -112386970 - MIR3 SINE MIR -53 155 118 2980 128 7 30 chr12 31895519 31895955 -112386534 - MSTB LTR MaLR 0 426 1 2982 106 86 0 chr12 31895969 31896352 -112386137 + MLT2A2 LTR ERVL 1 424 -29 894 81 0 0 chr12 31896352 31896476 -112386013 + (TA)n Simple_repeat Simple_repeat 2 125 0 2982 106 86 0 chr12 31896476 31896509 -112385980 + MLT2A2 LTR ERVL 424 453 0 452 230 81 72 chr12 31896594 31896816 -112385673 + L2 LINE L2 2905 3128 -185 1004 226 149 29 chr12 31897018 31897327 -112385162 - L2 LINE L2 0 3313 3042 3000 191 2 6 chr12 31897327 31897815 -112384674 + MER66B LTR ERV1 1 486 0 1004 226 149 29 chr12 31897815 31898080 -112384409 - L2 LINE L2 -271 3042 2668 4559 167 29 14 chr12 31898163 31899027 -112383462 + L1MB4 LINE L1 5304 6180 0 252 188 0 0 chr12 31899071 31899119 -112383370 - L2 LINE L2 -5 3308 3261 190 277 36 48 chr12 31900278 31900361 -112382128 + MIR SINE MIR 28 109 -153 438 238 229 51 chr12 31900381 31900595 -112381894 + MIR SINE MIR 8 259 -3 2104 178 5 56 chr12 31900937 31901348 -112381141 + MLT1B LTR MaLR 1 390 0 184 302 50 126 chr12 31901422 31901614 -112380875 - L2 LINE L2 -4 3268 3116 2667 89 100 8 chr12 31901614 31902005 -112380484 + MSTA LTR MaLR 2 428 0 184 302 50 126 chr12 31902005 31902176 -112380313 - L2 LINE L2 -156 3116 2933 218 306 14 14 chr12 31902469 31902541 -112379948 - MIR SINE MIR -32 230 159 303 268 21 10 chr12 31902736 31902833 -112379656 - MLT1J1 LTR MaLR -295 151 54 294 361 56 0 chr12 31902888 31902996 -112379493 - MIR SINE MIR -147 115 2 2280 105 3 0 chr12 31903030 31903335 -112379154 + AluSp SINE Alu 1 306 -7 506 335 74 54 chr12 31903360 31903667 -112378822 - L2 LINE L2 -584 2730 2408 1817 154 30 13 chr12 31903667 31903972 -112378517 + AluJb SINE Alu 1 310 -2 506 335 74 54 chr12 31903972 31904180 -112378309 - L2 LINE L2 -906 2408 2205 237 261 127 61 chr12 31904184 31904349 -112378140 - L2 LINE L2 -1274 2040 1865 4481 164 28 19 chr12 31904443 31905222 -112377267 + MER21B LTR ERV1 1 786 -77 952 310 61 22 chr12 31905358 31905765 -112376724 - LTR16A LTR ERVL -10 440 18 714 264 62 0 chr12 31905780 31905973 -112376516 + MIR SINE MIR 43 247 -15 198 184 41 41 chr12 31905998 31906047 -112376442 - MIR3 SINE MIR -153 55 7 225 295 26 13 chr12 31906675 31906753 -112375736 + MIR SINE MIR 72 150 -112 45302 38 1 1 chr12 31907599 31913757 -112368732 + L1PA4 LINE L1 1 6152 -3 27 0 0 0 chr12 31913757 31913784 -112368705 + AT_rich Low_complexity Low_complexity 1 27 0 2305 158 29 75 chr12 31913861 31914342 -112368147 - MLT1C LTR MaLR -8 459 1 552 194 15 8 chr12 31914345 31914479 -112368010 + L1ME2 LINE L1 5067 5201 -945 2603 190 105 70 chr12 31914855 31915761 -112366728 + L1ME2 LINE L1 5188 6161 -3 2627 151 46 12 chr12 31916829 31917241 -112365248 - MSTA LTR MaLR 0 428 3 2783 88 11 0 chr12 31917627 31917978 -112364511 + THE1A LTR MaLR 1 355 0 717 180 90 66 chr12 31919484 31919728 -112362761 + L1M4c LINE L1 1279 1528 -4856 15904 157 13 18 chr12 31919731 31921714 -112360775 + L1PA16 LINE L1 2 1973 -4876 2344 122 0 0 chr12 31921714 31922026 -112360463 + AluSx SINE Alu 1 312 0 15904 157 13 18 chr12 31922026 31922618 -112359871 + L1PA16 LINE L1 1973 2566 -4283 2143 207 47 2 chr12 31922596 31923088 -112359401 + L1PA16 LINE L1 5378 5891 -958 * 8219 114 21 16 chr12 31923095 31924335 -112358154 + L1PA7 LINE L1 5 1250 -5211 20494 87 2 1 chr12 31924337 31927801 -112354688 + L1PA7 LINE L1 2966 6453 -16 3874 128 40 11 chr12 31927839 31928535 -112353954 + L1PA16 LINE L1 5875 6585 -284 6521 95 10 22 chr12 31928535 31929605 -112352884 + L1PA13 LINE L1 5100 6158 -5 2502 61 0 10 chr12 31929607 31929917 -112352572 + AluY SINE Alu 1 307 -4 309 296 60 25 chr12 31929926 31930116 -112352373 - L1ME LINE L1 -456 5714 5514 430 299 32 36 chr12 31930217 31930495 -112351994 + HAL1b LINE L1 661 937 -411 2282 110 0 0 chr12 31930631 31930930 -112351559 - AluSc SINE Alu -10 299 1 1093 172 0 0 chr12 31930965 31931139 -112351350 + AluJb SINE Alu 137 310 -2 356 216 0 0 chr12 31931152 31931240 -112351249 + GA-rich Low_complexity Low_complexity 3 90 0 1391 101 31 35 chr12 31931464 31931692 -112350797 + L1MA10 LINE L1 6101 6327 -7 380 351 56 38 chr12 31931695 31932088 -112350401 + L1M4 LINE L1 2235 2634 -3512 234 215 38 25 chr12 31932802 31932881 -112349608 + L1M4 LINE L1 1042 1121 -5421 936 196 0 6 chr12 31932898 31933056 -112349433 + FRAM SINE Alu 1 152 -24 5023 72 37 7 chr12 31933666 31934369 -112348120 - L1PA11 LINE L1 0 6174 5451 23 0 0 0 chr12 31935006 31935029 -112347460 + AT_rich Low_complexity Low_complexity 1 23 0 1826 45 0 18 chr12 31935933 31936153 -112346336 + AluY SINE Alu 86 301 -10 1880 146 3 13 chr12 31938047 31938348 -112344141 + AluSx SINE Alu 1 298 -14 1890 153 10 0 chr12 31938488 31938783 -112343706 + AluSx SINE Alu 1 298 -14 629 235 159 39 chr12 31938786 31939177 -112343312 + MLT1H LTR MaLR 79 527 -15 2422 74 7 0 chr12 31939620 31939929 -112342560 - AluY SINE Alu 0 311 1 769 287 116 37 chr12 31940736 31940899 -112341590 + MLT1H LTR MaLR 1 150 -399 2124 118 14 3 chr12 31940899 31941196 -112341293 + AluJb SINE Alu 1 300 -12 769 287 116 37 chr12 31941196 31941541 -112340948 + MLT1H LTR MaLR 150 549 0 1328 262 136 16 chr12 31941787 31942271 -112340218 - MLT1F LTR MaLR 0 542 1 443 255 43 35 chr12 31942337 31942478 -112340011 - LTR67 LTR ERVL -4 553 412 2055 191 30 74 chr12 31942857 31943385 -112339104 - MLT1D LTR MaLR 0 505 1 4654 226 79 15 chr12 31944074 31945860 -112336629 + L1M1 LINE L1 3026 4943 -2622 1373 211 4 7 chr12 31945977 31946247 -112336242 + AluJo SINE Alu 6 274 -38 2353 11 7 0 chr12 31946620 31946892 -112335597 + L1PA2 LINE L1 5881 6154 -1 412 220 66 0 chr12 31946960 31947051 -112335438 + Tigger3b DNA MER2_type 6 102 -1129 * 4666 100 144 13 chr12 31947050 31947872 -112334617 + Tigger3b DNA MER2_type 279 1207 -24 23 0 0 0 chr12 31949098 31949121 -112333368 + AT_rich Low_complexity Low_complexity 1 23 0 255 255 106 35 chr12 31952489 31952630 -112329859 + L1ME LINE L1 5673 5823 -298 25 51 0 0 chr12 31952643 31952682 -112329807 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 31953646 31953667 -112328822 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr12 31953694 31953726 -112328763 + AT_rich Low_complexity Low_complexity 1 32 0 3074 159 73 6 chr12 31954043 31954463 -112328026 + L1MA7 LINE L1 5620 6097 -194 225 0 0 0 chr12 31954463 31954488 -112328001 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3074 159 73 6 chr12 31954488 31954697 -112327792 + L1MA7 LINE L1 6097 6291 0 216 0 0 0 chr12 31955255 31955279 -112327210 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2350 58 0 17 chr12 31957921 31958214 -112324275 - AluY SINE Alu -23 288 1 29 0 0 0 chr12 31958510 31958539 -112323950 + AT_rich Low_complexity Low_complexity 1 29 0 1512 101 48 0 chr12 31959993 31960220 -112322269 + L1MA5A LINE L1 6038 6275 -22 493 261 188 23 chr12 31960365 31960710 -112321779 + L1MC4a LINE L1 5756 6157 -1651 435 103 0 0 chr12 31960733 31960801 -112321688 - Alu SINE Alu 0 311 244 311 254 121 118 chr12 31960809 31961155 -112321334 + L1MC4a LINE L1 6235 6581 -1227 2198 100 0 23 chr12 31961156 31961465 -112321024 + AluSq SINE Alu 1 302 -11 1037 199 5 0 chr12 31961488 31961684 -112320805 + L1PA16 LINE L1 5954 6150 -16 227 129 29 29 chr12 31961871 31961941 -112320548 + (TA)n Simple_repeat Simple_repeat 2 71 0 846 198 172 104 chr12 31961943 31962425 -112320064 + L1MC5 LINE L1 6671 7173 -788 256 119 24 24 chr12 31962490 31962532 -112319957 + AluSc SINE Alu 219 260 -39 249 183 33 17 chr12 31962533 31962593 -112319896 + L1MC5 LINE L1 7308 7368 -593 1608 170 26 42 chr12 31962711 31963061 -112319428 + MSTB2 LTR MaLR 1 282 -114 1440 206 10 21 chr12 31963337 31963628 -112318861 + AluJo SINE Alu 9 296 -16 545 174 181 7 chr12 31963727 31963865 -112318624 + L1MB8 LINE L1 791 952 -5907 2259 106 6 10 chr12 31963884 31964196 -112318293 - AluSx SINE Alu -1 311 1 6182 213 72 12 chr12 31964421 31964755 -112317734 + L1MB8 LINE L1 3952 4264 -2693 200 33 0 33 chr12 31964755 31964785 -112317704 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6182 213 72 12 chr12 31964785 31966301 -112316188 + L1MB8 LINE L1 4264 5914 -1043 1058 144 58 4 chr12 31966303 31966513 -112315976 + AluJb SINE Alu 1 305 -7 3555 159 139 11 chr12 31966513 31967459 -112315030 + L1MB8 LINE L1 5911 6984 -5 21 71 0 0 chr12 31967587 31967629 -112314860 + AT_rich Low_complexity Low_complexity 1 42 0 301 314 122 21 chr12 31968569 31968757 -112313732 - L1ME LINE L1 -282 5839 5633 22 35 0 0 chr12 31969104 31969133 -112313356 + AT_rich Low_complexity Low_complexity 1 29 0 468 293 64 6 chr12 31969137 31969294 -112313195 + HAL1 LINE L1 4 169 -2338 705 187 64 41 chr12 31969372 31969543 -112312946 + MIR SINE MIR 1 175 -87 498 224 153 90 chr12 31969659 31969882 -112312607 + MIR SINE MIR 26 262 0 187 298 133 46 chr12 31970127 31970278 -112312211 - MIR3 SINE MIR -22 186 23 23 33 0 0 chr12 31970730 31970760 -112311729 + AT_rich Low_complexity Low_complexity 1 30 0 571 233 19 92 chr12 31971407 31971613 -112310876 + L2 LINE L2 3119 3309 -4 23 68 0 0 chr12 31972232 31972276 -112310213 + AT_rich Low_complexity Low_complexity 1 44 0 3163 174 38 21 chr12 31972866 31973985 -112308504 + L1MA8 LINE L1 4767 5897 -394 1164 129 35 10 chr12 31974000 31974202 -112308287 - L1MC2 LINE L1 -181 6163 5957 898 131 172 9 chr12 31974224 31974632 -112307857 - L1MA8 LINE L1 0 6291 5756 272 217 72 0 chr12 31974643 31974712 -112307777 + Charlie7 DNA MER1_type 2539 2612 0 1698 179 3 3 chr12 31974940 31975225 -112307264 - AluJb SINE Alu -27 285 1 24 53 0 0 chr12 31975520 31975558 -112306931 + AT_rich Low_complexity Low_complexity 1 38 0 313 242 54 60 chr12 31975677 31975826 -112306663 + L1M4 LINE L1 4568 4715 -1431 551 249 77 72 chr12 31976194 31976776 -112305713 + L1ME4a LINE L1 5379 5982 -139 1004 155 0 0 chr12 31977043 31977211 -112305278 + L1PA12 LINE L1 5715 5882 -286 918 136 0 0 chr12 31977504 31977636 -112304853 - AluSg/x SINE Alu -17 293 162 2322 125 168 77 chr12 31977637 31978220 -112304269 + MER4-int LTR ERV1 47 682 -5916 203 268 134 24 chr12 31978357 31978439 -112304050 + L2 LINE L2 3150 3240 -32 24 77 0 0 chr12 31978486 31978538 -112303951 + AT_rich Low_complexity Low_complexity 1 52 0 485 205 162 52 chr12 31979114 31979441 -112303048 + HAL1 LINE L1 1081 1443 -1064 1468 162 156 3 chr12 31979504 31979806 -112302683 - MER7A DNA MER2_type 0 346 1 486 330 23 6 chr12 31980663 31980836 -112301653 - MIR3 SINE MIR -8 200 25 2166 98 14 3 chr12 31982313 31982608 -112299881 - AluSq SINE Alu -15 298 1 906 244 129 52 chr12 31984118 31984483 -112298006 - L2 LINE L2 -11 3302 2910 614 259 129 10 chr12 31984767 31984960 -112297529 - MIR SINE MIR -27 235 20 819 185 46 0 chr12 31985473 31985624 -112296865 + AluJo SINE Alu 48 205 -107 189 0 0 0 chr12 31985631 31985652 -112296837 + (GA)n Simple_repeat Simple_repeat 2 22 0 1265 182 112 15 chr12 31987081 31987350 -112295139 + AluJo SINE Alu 1 295 -17 286 279 0 0 chr12 31988816 31988884 -112293605 - L3 LINE CR1 -175 1402 1335 2517 45 0 7 chr12 31988963 31989272 -112293217 + AluY SINE Alu 1 307 -4 338 308 62 51 chr12 31989367 31989562 -112292927 + L1M4 LINE L1 4883 5079 -1067 24 77 0 0 chr12 31989600 31989652 -112292837 + AT_rich Low_complexity Low_complexity 1 52 0 2152 122 0 7 chr12 31990546 31990840 -112291649 + AluSx SINE Alu 1 292 -20 23 68 0 0 chr12 31990929 31990973 -112291516 + AT_rich Low_complexity Low_complexity 1 44 0 399 233 103 0 chr12 31992601 31992717 -112289772 + L1ME2 LINE L1 6027 6154 -10 2346 73 0 52 chr12 31993117 31993445 -112289044 + AluY SINE Alu 1 311 0 1189 193 134 30 chr12 31993528 31993797 -112288692 - AluJo SINE Alu -5 297 1 28 0 0 0 chr12 31993939 31993967 -112288522 + AT_rich Low_complexity Low_complexity 1 28 0 239 209 164 0 chr12 31994232 31994299 -112288190 + MER116 DNA Mariner 3 80 0 239 226 38 19 chr12 31994698 31994751 -112287738 - L2 LINE L2 -78 3235 3182 5609 134 110 29 chr12 31994760 31995426 -112287063 + Tigger3b DNA MER2_type 2 613 -2415 2094 90 38 3 chr12 31995426 31995715 -112286774 + AluSg SINE Alu 1 299 -11 5609 134 110 29 chr12 31995715 31996186 -112286303 + Tigger3b DNA MER2_type 613 1231 0 1947 146 3 0 chr12 31996416 31996710 -112285779 - AluSx SINE Alu -17 295 1 26 50 0 0 chr12 31997213 31997253 -112285236 + AT_rich Low_complexity Low_complexity 1 40 0 297 128 0 0 chr12 31997677 31997724 -112284765 + (TTC)n Simple_repeat Simple_repeat 3 49 0 253 186 0 0 chr12 31997967 31998010 -112284479 - MIR SINE MIR 0 262 220 27 0 0 0 chr12 31998268 31998295 -112284194 + AT_rich Low_complexity Low_complexity 1 27 0 452 282 7 0 chr12 31998990 31999132 -112283357 - MER103 DNA DNA -13 153 11 778 225 55 10 chr12 32001146 32001346 -112281143 - MER3 DNA MER1_type 0 209 1 2261 118 3 0 chr12 32002705 32003010 -112279479 - AluSx SINE Alu -6 306 1 261 0 0 0 chr12 32003072 32003101 -112279388 + (TG)n Simple_repeat Simple_repeat 2 30 0 1903 101 87 0 chr12 32003216 32003492 -112278997 + AluSx SINE Alu 3 302 -10 1922 133 7 3 chr12 32003930 32004215 -112278274 - AluJb SINE Alu -23 289 4 34 55 0 0 chr12 32004373 32004428 -112278061 + AT_rich Low_complexity Low_complexity 1 55 0 28 48 0 0 chr12 32004504 32004546 -112277943 + AT_rich Low_complexity Low_complexity 1 42 0 778 297 52 22 chr12 32006298 32006702 -112275787 + L1MC4a LINE L1 5495 5910 -1898 234 133 48 96 chr12 32007039 32007122 -112275367 + HAL1b LINE L1 925 1003 -345 411 227 210 42 chr12 32007161 32007402 -112275087 + HAL1b LINE L1 1064 6109 -12 468 304 150 6 chr12 32008316 32008569 -112273920 - L1MC/D LINE L1 -488 5633 5358 279 323 30 0 chr12 32008584 32008748 -112273741 - L1MC/D LINE L1 -814 5332 5164 186 235 270 17 chr12 32010307 32010422 -112272067 + L2 LINE L2 2899 3042 -271 323 203 0 68 chr12 32011448 32011522 -112270967 + 5S rRNA rRNA 1 69 -52 722 218 40 6 chr12 32012096 32012270 -112270219 - MER5A DNA MER1_type -9 180 1 207 286 98 74 chr12 32013870 32014073 -112268416 - L2 LINE L2 0 3313 3106 4321 127 59 7 chr12 32014082 32014828 -112267661 + LTR1 LTR ERV1 1 785 0 180 0 0 0 chr12 32016295 32016315 -112266174 + (CG)n Simple_repeat Simple_repeat 1 20 0 * 339 25 0 0 chr12 32016314 32016354 -112266135 + (TG)n Simple_repeat Simple_repeat 2 41 0 1486 185 38 4 chr12 32016391 32016656 -112265833 - AluJb SINE Alu -38 274 1 401 269 116 37 chr12 32016771 32016987 -112265502 + L2 LINE L2 2128 2360 -954 3912 154 47 7 chr12 32017059 32017788 -112264701 + L1MD1 LINE L1 5476 6233 -9 206 333 0 46 chr12 32018273 32018360 -112264129 + L2 LINE L2 3231 3313 0 283 313 158 42 chr12 32018361 32018645 -112263844 - L2 LINE L2 -701 2613 2297 2218 119 3 3 chr12 32019116 32019426 -112263063 + AluSx SINE Alu 1 310 -2 1194 199 26 22 chr12 32019471 32019702 -112262787 + MER8 DNA MER2_type 8 239 0 24 0 0 0 chr12 32019712 32019736 -112262753 + AT_rich Low_complexity Low_complexity 1 24 0 187 245 38 19 chr12 32020348 32020401 -112262088 + MIR SINE MIR 151 204 -58 1848 143 0 38 chr12 32020403 32020535 -112261954 + AluJb SINE Alu 1 137 -175 2137 117 10 3 chr12 32020535 32020835 -112261654 + AluSx SINE Alu 1 302 -10 1848 143 0 38 chr12 32020835 32021016 -112261473 + AluJb SINE Alu 137 302 -10 381 284 123 0 chr12 32021425 32021469 -112261020 - L1MC/D LINE L1 -2152 5656 5619 432 0 0 0 chr12 32021469 32021517 -112260972 + (TG)n Simple_repeat Simple_repeat 2 49 0 381 284 123 0 chr12 32021517 32021634 -112260855 - L1MC/D LINE L1 -2189 5619 5475 514 265 146 18 chr12 32022721 32022800 -112259689 + HAL1 LINE L1 941 1009 -1498 1781 154 82 3 chr12 32022800 32023119 -112259370 - MER2 DNA MER2_type 0 344 1 514 265 146 18 chr12 32023119 32023367 -112259122 + HAL1 LINE L1 1009 1310 -1197 1758 163 10 7 chr12 32023799 32024088 -112258401 - AluJb SINE Alu -21 291 2 2142 163 74 52 chr12 32025462 32025960 -112256529 + LTR22 LTR ERVK 1 509 0 2290 101 0 0 chr12 32026070 32026368 -112256121 - AluSx SINE Alu -14 298 1 502 258 76 77 chr12 32026475 32026726 -112255763 - MIR SINE MIR -12 250 3 222 284 63 32 chr12 32028228 32028323 -112254166 - MIR3 SINE MIR -23 185 88 31 58 0 0 chr12 32029640 32029692 -112252797 + AT_rich Low_complexity Low_complexity 1 52 0 391 329 30 39 chr12 32030060 32030291 -112252198 - MIR SINE MIR 0 262 34 2261 84 10 10 chr12 32030306 32030614 -112251875 - AluSq SINE Alu -5 308 1 357 292 92 0 chr12 32030963 32031093 -112251396 + MIR SINE MIR 2 143 -119 1594 209 3 7 chr12 32031749 32032055 -112250434 - AluJo SINE Alu -7 305 1 2216 143 23 3 chr12 32032883 32033267 -112249222 + L1MB3 LINE L1 5785 6176 -7 4505 151 44 5 chr12 32034350 32035174 -112247315 + L1MB4 LINE L1 5325 6180 0 276 294 110 25 chr12 32035389 32035552 -112246937 + L2 LINE L2 3095 3271 -42 2056 138 24 0 chr12 32037659 32037956 -112244533 - AluSx SINE Alu -8 304 1 888 254 37 14 chr12 32038576 32038793 -112243696 - MIR SINE MIR -15 247 26 184 333 116 0 chr12 32039865 32039934 -112242555 - MER5B DNA MER1_type -29 149 73 2068 114 3 23 chr12 32040191 32040498 -112241991 + AluSg1 SINE Alu 1 301 -8 1741 177 3 16 chr12 32042281 32042586 -112239903 + AluJo SINE Alu 1 301 -11 183 230 390 0 chr12 32042868 32042968 -112239521 - MIR SINE MIR -78 184 46 254 293 40 73 chr12 32043089 32043239 -112239250 + L2 LINE L2 3144 3288 -25 446 268 121 45 chr12 32043287 32043485 -112239004 - MIR SINE MIR -49 213 1 232 250 79 21 chr12 32043947 32044087 -112238402 - MER104 DNA Tc2 0 180 33 2221 116 0 3 chr12 32045845 32046155 -112236334 + AluY SINE Alu 1 309 -2 895 277 27 16 chr12 32047508 32047764 -112234725 - MIR SINE MIR 0 262 4 232 200 0 36 chr12 32049349 32049404 -112233085 + MIR SINE MIR 92 144 -64 1590 203 175 15 chr12 32049985 32050521 -112231968 - L1ME1 LINE L1 -9 6157 5536 354 100 0 0 chr12 32052422 32052482 -112230007 + (CA)n Simple_repeat Simple_repeat 2 61 0 30 0 0 0 chr12 32053313 32053343 -112229146 + AT_rich Low_complexity Low_complexity 1 30 0 2055 152 0 0 chr12 32053431 32053728 -112228761 + AluJb SINE Alu 1 297 -15 1670 192 38 0 chr12 32054579 32054866 -112227623 - AluJo SINE Alu -14 298 1 418 242 61 0 chr12 32054884 32054983 -112227506 + L2 LINE L2 3163 3267 -5 2501 63 0 0 chr12 32055166 32055469 -112227020 - AluY SINE Alu -8 303 1 314 319 0 0 chr12 32055920 32055992 -112226497 + MIR SINE MIR 34 105 -157 5793 109 12 10 chr12 32055995 32057139 -112225350 + L1PA13 LINE L1 5007 6152 -11 1200 68 0 0 chr12 32057158 32057306 -112225183 + AluY SINE Alu 153 300 -11 316 246 197 8 chr12 32057307 32057429 -112225060 + MIR SINE MIR 97 241 -21 763 234 6 0 chr12 32057688 32057859 -112224630 + FRAM SINE Alu 1 164 -12 1485 162 92 0 chr12 32059361 32059676 -112222813 + L1MB8 LINE L1 5629 5972 -212 311 264 39 23 chr12 32059690 32059819 -112222670 + L1MB8 LINE L1 6034 6164 -14 256 328 67 39 chr12 32059829 32060009 -112222480 + L1ME LINE L1 5476 5660 -504 329 310 190 43 chr12 32060555 32061203 -112221286 + L2 LINE L2 1360 2102 -1212 * 447 308 30 0 chr12 32061185 32061318 -112221171 + MIR SINE MIR 104 240 -22 760 333 90 58 chr12 32061341 32062432 -112220057 + L2 LINE L2 2105 3271 -1 24 53 0 0 chr12 32062892 32062930 -112219559 + AT_rich Low_complexity Low_complexity 1 38 0 363 254 90 8 chr12 32063112 32063234 -112219255 + L1M4 LINE L1 2876 3007 -3139 546 144 62 0 chr12 32063725 32063822 -112218667 + L1MC2 LINE L1 6004 6106 -238 860 145 53 26 chr12 32063822 32063974 -112218515 + FRAM SINE Alu 1 155 -21 786 163 0 44 chr12 32063986 32064146 -112218343 + L1MC1 LINE L1 6093 6245 -88 10594 117 40 10 chr12 32064148 32064968 -112217521 + Tigger1 DNA MER2_type 609 1403 -1015 2361 89 3 0 chr12 32064968 32065272 -112217217 + AluSp SINE Alu 1 305 -8 10594 117 40 10 chr12 32065272 32066207 -112216282 + Tigger1 DNA MER2_type 1403 2417 -1 1425 278 127 30 chr12 32066384 32067369 -112215120 - L2 LINE L2 -8 3305 2219 1154 178 4 61 chr12 32069018 32069249 -112213240 + MER20 DNA MER1_type 1 218 -1 2390 84 3 10 chr12 32069482 32069792 -112212697 - AluSq SINE Alu -3 310 3 485 270 106 108 chr12 32071962 32072815 -112209674 + L1M2 LINE L1 493 1246 -5603 1872 130 4 4 chr12 32073855 32074155 -112208334 + AluSx SINE Alu 6 305 0 400 294 116 27 chr12 32074691 32074837 -112207652 - L2 LINE L2 0 3272 3114 2249 118 0 3 chr12 32075278 32075584 -112206905 + AluSq SINE Alu 1 305 -8 640 224 21 68 chr12 32075984 32076176 -112206313 + MIR SINE MIR 3 185 -77 619 266 70 41 chr12 32076596 32076912 -112205577 + L1ME4a LINE L1 5602 5926 -195 2187 80 4 0 chr12 32077201 32077476 -112205013 + AluY SINE Alu 6 281 -30 246 95 0 0 chr12 32077478 32077520 -112204969 + (TTAA)n Simple_repeat Simple_repeat 1 42 0 4372 137 39 33 chr12 32077894 32078532 -112203957 + L1MB8 LINE L1 5088 5721 -457 2173 84 3 36 chr12 32078532 32078841 -112203648 + AluSg1 SINE Alu 1 299 -10 4372 137 39 33 chr12 32078841 32078986 -112203503 + L1MB8 LINE L1 5721 5864 -314 2016 135 0 14 chr12 32078986 32079306 -112203183 + AluSq SINE Alu 2 313 0 4372 137 39 33 chr12 32079306 32079571 -112202918 + L1MB8 LINE L1 5864 6143 -35 1387 191 50 47 chr12 32079571 32079754 -112202735 + MLT1C LTR MaLR 1 182 -285 2473 66 0 7 chr12 32079754 32080057 -112202432 + AluY SINE Alu 1 301 -10 1387 191 50 47 chr12 32080057 32080276 -112202213 + MLT1C LTR MaLR 182 404 -63 263 125 109 16 chr12 32080363 32080427 -112202062 + MLT1C LTR MaLR 398 467 0 961 253 15 11 chr12 32080591 32080856 -112201633 - MER74B LTR ERVL -164 458 193 255 163 41 0 chr12 32080918 32080967 -112201522 - MER74B LTR ERVL -569 53 3 866 268 80 21 chr12 32081480 32081594 -112200895 - L1MC4a LINE L1 -337 5784 5678 512 237 0 0 chr12 32081594 32081725 -112200764 + L1PB4 LINE L1 6026 6156 0 866 268 80 21 chr12 32081725 32081989 -112200500 - L1MC4a LINE L1 -443 5678 5493 313 246 0 0 chr12 32082208 32082273 -112200216 + LTR16C LTR ERVL 233 297 -194 426 255 128 0 chr12 32082963 32083104 -112199385 + MIR SINE MIR 104 262 0 351 315 19 9 chr12 32083598 32083706 -112198783 + MIR3 SINE MIR 8 116 -92 587 333 78 13 chr12 32083728 32084037 -112198452 + L2 LINE L2 2503 2831 -483 1562 217 116 9 chr12 32084054 32084545 -112197944 + MLT1E LTR MaLR 1 593 0 928 295 113 28 chr12 32084547 32084971 -112197518 + L2 LINE L2 2854 3313 0 391 240 146 21 chr12 32085826 32086018 -112196471 - HAL1b LINE L1 -652 696 481 562 180 135 18 chr12 32086253 32086364 -112196125 - FLAM_A SINE Alu -9 124 1 1970 280 78 60 chr12 32086387 32087394 -112195095 - HAL1 LINE L1 -1478 1029 4 190 346 19 0 chr12 32087436 32087488 -112195001 + L2 LINE L2 3128 3180 -92 853 224 6 0 chr12 32087587 32087761 -112194728 + FRAM SINE Alu 1 175 -1 577 155 21 10 chr12 32088349 32088446 -112194043 + MER4A LTR ERV1 1 98 -566 1799 132 2 97 chr12 32088446 32088819 -112193670 + MER4A LTR ERV1 261 664 0 16256 116 115 105 chr12 32088821 32090160 -112192329 + MER4A-int LTR ERV1 1 1325 -5273 1966 153 3 0 chr12 32090160 32090448 -112192041 - AluSx SINE Alu -23 289 1 16256 116 115 105 chr12 32090448 32091817 -112190672 + MER4A-int LTR ERV1 1325 2679 -3919 1993 139 35 0 chr12 32091817 32092105 -112190384 + AluSq SINE Alu 1 298 -15 16256 116 115 105 chr12 32092105 32093401 -112189088 + MER4A-int LTR ERV1 2679 3960 -2638 1290 119 0 11 chr12 32093401 32093586 -112188903 + AluSg/x SINE Alu 128 310 0 16256 116 115 105 chr12 32093586 32095624 -112186865 + MER4A-int LTR ERV1 3960 6596 -2 644 103 21 10 chr12 32095632 32095729 -112186760 + MER4A LTR ERV1 1 98 -566 1693 134 5 77 chr12 32095729 32096101 -112186388 + MER4A LTR ERV1 261 664 0 194 62 31 0 chr12 32096137 32096169 -112186320 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 3855 121 62 12 chr12 32096173 32096754 -112185735 - MER4B LTR ERV1 0 610 1 458 256 30 41 chr12 32098025 32098291 -112184198 - L1M4 LINE L1 -3597 2549 2287 3041 179 19 10 chr12 32098492 32099067 -112183422 + L1MB5 LINE L1 5587 6166 -8 2150 125 7 7 chr12 32099142 32099447 -112183042 - AluSx SINE Alu -7 305 1 1122 203 139 102 chr12 32099992 32100474 -112182015 - MLT1H LTR MaLR 0 549 1 719 242 89 5 chr12 32100850 32101040 -112181449 + MIR SINE MIR 5 210 -52 350 312 85 18 chr12 32101191 32101473 -112181016 - L1ME LINE L1 -337 5784 5484 2622 128 24 69 chr12 32101813 32102322 -112180167 + LTR19A LTR ERV1 1 486 0 492 273 9 0 chr12 32102863 32102973 -112179516 - MER5A DNA MER1_type -1 188 78 1151 163 25 153 chr12 32102973 32103717 -112178772 - MER4A LTR ERV1 0 695 1 466 182 0 0 chr12 32103719 32103796 -112178693 - MER5A DNA MER1_type -110 79 3 237 265 25 143 chr12 32103804 32103873 -112178616 + MER5B DNA MER1_type 4 79 -99 183 42 0 0 chr12 32103873 32103897 -112178592 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 237 265 25 143 chr12 32103897 32104023 -112178466 + MER5B DNA MER1_type 79 176 -2 2464 11 0 28 chr12 32104344 32104629 -112177860 + AluYa5 SINE Alu 35 311 0 23 0 0 0 chr12 32104630 32104653 -112177836 + AT_rich Low_complexity Low_complexity 1 23 0 209 310 17 0 chr12 32105651 32105709 -112176780 + L2 LINE L2 3205 3263 -9 1220 241 35 22 chr12 32105740 32106051 -112176438 - MER87 LTR ERV1 0 541 227 24 32 0 0 chr12 32106051 32106082 -112176407 + AT_rich Low_complexity Low_complexity 1 31 0 888 218 4 94 chr12 32106105 32106371 -112176118 - MER87 LTR ERV1 -299 242 1 193 243 122 0 chr12 32106480 32106554 -112175935 + L2 LINE L2 2231 2313 -1001 715 247 72 31 chr12 32106557 32106780 -112175709 + MIR SINE MIR 1 232 -30 1644 245 112 32 chr12 32106782 32106919 -112175570 + MLT1E LTR MaLR 1 126 -467 1934 188 142 55 chr12 32106919 32107139 -112175350 + MLT2B2 LTR ERVL 1 201 -314 2095 138 0 0 chr12 32107139 32107430 -112175059 + AluSx SINE Alu 1 291 -21 1934 188 142 55 chr12 32107430 32107635 -112174854 + MLT2B2 LTR ERVL 201 473 -42 327 49 0 0 chr12 32107635 32107676 -112174813 + (CA)n Simple_repeat Simple_repeat 2 42 0 1934 188 142 55 chr12 32107676 32107722 -112174767 + MLT2B2 LTR ERVL 473 514 -1 1644 245 112 32 chr12 32107722 32108118 -112174371 + MLT1E LTR MaLR 126 577 -16 247 238 20 40 chr12 32108169 32108270 -112174219 + L2 LINE L2 2383 2481 -833 4190 145 25 85 chr12 32108395 32109228 -112173261 - LTR39 LTR ERV1 0 783 1 205 344 21 21 chr12 32109231 32109324 -112173165 + L2 LINE L2 2798 2890 -424 625 260 0 8 chr12 32109326 32109453 -112173036 + LTR39 LTR ERV1 658 783 0 781 225 104 26 chr12 32109841 32110072 -112172417 - MIR SINE MIR -6 256 8 299 250 264 0 chr12 32110242 32110382 -112172107 + MIR SINE MIR 60 236 -26 214 203 17 17 chr12 32110818 32110877 -112171612 + (TTCA)n Simple_repeat Simple_repeat 4 62 0 275 300 95 16 chr12 32111048 32111175 -112171314 - MIR SINE MIR -61 147 11 2313 74 7 10 chr12 32111306 32111602 -112170887 + AluY SINE Alu 1 295 -16 2171 100 0 40 chr12 32111925 32112246 -112170243 - AluSq SINE Alu -1 312 5 27 0 0 0 chr12 32113805 32113832 -112168657 + GC_rich Low_complexity Low_complexity 1 27 0 2372 76 7 7 chr12 32114956 32115259 -112167230 - AluSq SINE Alu -10 303 1 1214 203 111 6 chr12 32115473 32115698 -112166791 - Charlie2 DNA MER1_type -615 2247 1978 812 211 0 0 chr12 32115698 32115831 -112166658 - FLAM_A SINE Alu 0 133 1 1214 203 111 6 chr12 32115831 32115920 -112166569 - Charlie2 DNA MER1_type -884 1978 1900 202 231 0 19 chr12 32115920 32115972 -112166517 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 522 206 131 111 chr12 32115991 32116243 -112166246 - Charlie2 DNA MER1_type -2454 328 72 1542 181 84 3 chr12 32116243 32116552 -112165937 - MER58B DNA MER1_type -6 335 2 335 239 14 0 chr12 32116555 32116626 -112165863 - Charlie2 DNA MER1_type -2702 80 9 656 204 0 102 chr12 32116636 32116697 -112165792 - MER5B DNA MER1_type -3 175 109 2198 108 7 3 chr12 32116697 32116992 -112165497 + AluSq SINE Alu 1 296 -17 656 204 0 102 chr12 32116992 32117106 -112165383 - MER5B DNA MER1_type -69 109 18 284 214 14 14 chr12 32117201 32117271 -112165218 - HsTC2 DNA Tc2 -1812 86 17 184 346 38 31 chr12 32117750 32117854 -112164635 + L2 LINE L2 3137 3244 -69 1145 222 82 71 chr12 32117854 32118246 -112164243 + MSTD LTR MaLR 1 396 0 184 346 38 31 chr12 32118246 32118300 -112164189 + L2 LINE L2 3244 3296 -17 1732 172 3 14 chr12 32118331 32118621 -112163868 - AluSx SINE Alu -25 287 1 505 262 247 42 chr12 32119210 32119542 -112162947 + MLT1H LTR MaLR 139 538 -11 2211 117 0 3 chr12 32119876 32120175 -112162314 - AluSx SINE Alu -14 298 1 25 31 0 0 chr12 32120768 32120800 -112161689 + AT_rich Low_complexity Low_complexity 1 32 0 2792 118 70 0 chr12 32120922 32121322 -112161167 - MSTA LTR MaLR 0 428 1 10038 158 29 24 chr12 32121322 32122966 -112159523 - MSTA-int LTR MaLR 0 1651 1 1030 124 158 6 chr12 32122966 32123143 -112159346 - MSTA LTR MaLR 0 428 225 537 139 0 0 chr12 32123212 32123284 -112159205 + AluY SINE Alu 11 82 -229 23 0 0 0 chr12 32123421 32123444 -112159045 + AT_rich Low_complexity Low_complexity 1 23 0 260 309 71 0 chr12 32123686 32123770 -112158719 - MIR3 SINE MIR -54 154 65 2524 64 3 3 chr12 32124221 32124532 -112157957 - AluY SINE Alu 0 311 1 7536 177 28 30 chr12 32124563 32125490 -112156999 + L1M3f LINE L1 10 938 -5390 1897 176 0 0 chr12 32125490 32125792 -112156697 - AluSx SINE Alu -10 302 1 7536 177 28 30 chr12 32125792 32127306 -112155183 + L1M3f LINE L1 938 2438 -3890 951 188 11 0 chr12 32127311 32127487 -112155002 + L1M3f LINE L1 2544 2721 -3607 2177 114 14 0 chr12 32127573 32127862 -112154627 - AluSx SINE Alu -19 293 1 22 0 0 0 chr12 32127884 32127906 -112154583 + AT_rich Low_complexity Low_complexity 1 22 0 3070 211 61 48 chr12 32127926 32128532 -112153957 + L1ME2 LINE L1 4638 5234 -930 819 155 0 0 chr12 32128532 32128694 -112153795 + FLAM_C SINE Alu 1 162 0 3070 211 61 48 chr12 32128694 32129344 -112153145 + L1ME2 LINE L1 5234 5874 -290 2649 181 26 63 chr12 32129344 32129919 -112152570 - MLT2B3 LTR ERVL 0 554 1 3070 211 61 48 chr12 32129919 32129997 -112152492 + L1ME2 LINE L1 5874 5949 -215 798 157 51 91 chr12 32129997 32130058 -112152431 - MER53 DNA DNA 0 189 127 1645 163 45 21 chr12 32130058 32130346 -112152143 - AluJo SINE Alu -17 295 1 798 157 51 91 chr12 32130346 32130406 -112152083 - MER53 DNA DNA -62 127 66 408 20 0 0 chr12 32130406 32130455 -112152034 + (CA)n Simple_repeat Simple_repeat 2 50 0 798 157 51 91 chr12 32130455 32130529 -112151960 - MER53 DNA DNA -123 66 1 3070 211 61 48 chr12 32130529 32130673 -112151816 + L1ME2 LINE L1 5949 6154 -10 286 246 86 104 chr12 32130705 32130925 -112151564 + L1MC4 LINE L1 7826 8041 -1 310 221 15 0 chr12 32131339 32131407 -112151082 - L1MC/D LINE L1 -2018 5790 5722 4267 246 107 26 chr12 32131426 32132400 -112150089 - L1MD2 LINE L1 -13 6346 5452 1826 181 0 3 chr12 32132400 32132698 -112149791 - AluJo SINE Alu -15 297 1 4267 246 107 26 chr12 32132698 32133593 -112148896 - L1MD2 LINE L1 -907 5452 4299 204 40 0 0 chr12 32133603 32133628 -112148861 + (TG)n Simple_repeat Simple_repeat 1 25 0 1741 170 7 7 chr12 32133882 32134171 -112148318 + AluJb SINE Alu 7 295 -17 1474 188 37 12 chr12 32134762 32135074 -112147415 + MER61B LTR ERV1 1 413 -12 243 61 0 0 chr12 32135902 32135935 -112146554 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 384 59 0 0 chr12 32136607 32136658 -112145831 + (GA)n Simple_repeat Simple_repeat 1 51 0 2224 111 0 0 chr12 32137720 32138026 -112144463 + AluSq SINE Alu 1 306 -7 282 29 0 0 chr12 32138268 32138303 -112144186 + (CA)n Simple_repeat Simple_repeat 2 36 0 558 158 26 92 chr12 32138310 32138462 -112144027 + LTR25 LTR ERV1 215 356 -438 986 166 28 4 chr12 32138635 32138858 -112143631 + LTR25 LTR ERV1 339 784 0 234 81 0 0 chr12 32139866 32139903 -112142586 + (A)n Simple_repeat Simple_repeat 1 37 0 204 179 0 0 chr12 32141136 32141175 -112141314 + (TG)n Simple_repeat Simple_repeat 1 39 0 526 285 81 23 chr12 32141670 32141891 -112140598 + L2 LINE L2 3079 3312 -1 1165 269 156 12 chr12 32141915 32142401 -112140088 - L3 LINE CR1 -10 1567 1012 263 192 39 0 chr12 32142408 32142460 -112140029 + MER5B DNA MER1_type 2 55 -123 252 204 19 0 chr12 32142478 32142532 -112139957 - MER5B DNA MER1_type -121 57 3 216 311 0 0 chr12 32142553 32142614 -112139875 - L3 LINE CR1 -579 998 938 214 298 188 16 chr12 32143501 32143623 -112138866 + MIR SINE MIR 21 160 -102 188 306 65 0 chr12 32143663 32143725 -112138764 + MIR SINE MIR 157 222 -40 560 138 0 55 chr12 32144157 32144266 -112138223 + L1PA12 LINE L1 6066 6168 0 572 263 81 8 chr12 32147803 32148039 -112134450 + MER112 DNA MER1_type 3 255 -1 405 0 0 0 chr12 32148268 32148313 -112134176 + (TG)n Simple_repeat Simple_repeat 1 45 0 198 0 0 0 chr12 32148312 32148334 -112134155 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 232 308 0 0 chr12 32148717 32148782 -112133707 + (CA)n Simple_repeat Simple_repeat 1 65 0 293 293 121 32 chr12 32148882 32149039 -112133450 + MIR SINE MIR 32 202 -60 2935 130 9 0 chr12 32149549 32149973 -112132516 - MSTA LTR MaLR 0 428 1 246 273 0 15 chr12 32150311 32150377 -112132112 - MIR SINE MIR -11 251 187 4319 146 94 13 chr12 32151097 32151859 -112130630 + LTR1B LTR ERV1 1 824 -2 258 310 46 76 chr12 32152314 32152436 -112130053 - MIR SINE MIR -63 145 40 2027 228 128 33 chr12 32152676 32153338 -112129151 + MER50 LTR ERV1 10 734 0 1943 167 167 49 chr12 32154663 32155153 -112127336 + LTR10A LTR ERV1 1 548 -61 1811 143 7 30 chr12 32155469 32155769 -112126720 + AluJo SINE Alu 1 293 -19 1151 171 36 52 chr12 32155891 32156142 -112126347 + AluJo SINE Alu 47 293 -19 336 246 29 76 chr12 32156470 32156641 -112125848 - L2 LINE L2 -213 3059 2897 1416 183 98 87 chr12 32158081 32158580 -112123909 - MER66A LTR ERV1 0 478 97 286 152 0 0 chr12 32159123 32159169 -112123320 - MIR SINE MIR -33 229 184 951 317 57 29 chr12 32160731 32161254 -112121235 - L2 LINE L2 -355 2959 2422 3224 165 53 23 chr12 32161266 32161885 -112120604 + LTR9B LTR ERV1 7 644 0 320 184 92 101 chr12 32161885 32161994 -112120495 + HUERS-P3 LTR ERV1 1 108 -7310 * 8425 166 37 26 chr12 32161986 32162318 -112120171 + HUERS-P3 LTR ERV1 411 738 -7860 2345 77 3 0 chr12 32162318 32162629 -112119860 + AluSp SINE Alu 1 312 -1 8425 166 37 26 chr12 32162629 32164838 -112117651 + HUERS-P3 LTR ERV1 738 3284 -5314 822 194 43 0 chr12 32164831 32164970 -112117519 + HUERS-P3 LTR ERV1 4539 4683 -4236 * 2964 157 4 7 chr12 32164970 32165458 -112117031 + HUERS-P3 LTR ERV1 4889 5404 -1699 * 3979 175 4 26 chr12 32165442 32165685 -112116804 + HUERS-P3 LTR ERV1 6250 6497 -2422 2079 61 10 17 chr12 32165685 32166021 -112116468 - AluY SINE Alu 0 311 1 3979 175 4 26 chr12 32166021 32166464 -112116025 + HUERS-P3 LTR ERV1 6497 6921 -1998 455 215 0 0 chr12 32166471 32166564 -112115925 + HUERS-P3 LTR ERV1 6882 6974 -1945 696 190 45 8 chr12 32166566 32166757 -112115732 + HUERS-P3 LTR ERV1 2383 4329 -551 1356 185 0 22 chr12 32167016 32167124 -112115365 + HUERS-P3 LTR ERV1 7158 7267 -1652 4630 45 35 0 chr12 32167124 32167695 -112114794 - LTR10C LTR ERV1 0 591 1 1356 185 0 22 chr12 32167695 32167862 -112114627 + HUERS-P3 LTR ERV1 7267 8919 0 3128 143 87 38 chr12 32167862 32167954 -112114535 + LTR9B LTR ERV1 7 93 -551 2043 110 7 20 chr12 32167954 32168255 -112114234 - AluSx SINE Alu -15 297 1 3128 143 87 38 chr12 32168255 32168537 -112113952 + LTR9B LTR ERV1 93 360 -284 6373 114 23 22 chr12 32168537 32169490 -112112999 + LTR13 LTR ERVK 1 954 0 3128 143 87 38 chr12 32169490 32169722 -112112767 + LTR9B LTR ERV1 360 644 0 248 200 139 26 chr12 32170618 32170733 -112111756 - Charlie7 DNA MER1_type -14 2598 2471 364 175 21 21 chr12 32170733 32170830 -112111659 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 495 204 76 140 chr12 32171729 32172136 -112110353 - Charlie7 DNA MER1_type -75 2537 2157 1892 99 0 51 chr12 32172176 32172468 -112110021 + AluSx SINE Alu 14 290 -22 30 0 0 0 chr12 32172468 32172498 -112109991 + AT_rich Low_complexity Low_complexity 1 30 0 1125 268 80 11 chr12 32172521 32172682 -112109807 - Charlie7 DNA MER1_type -2045 567 419 581 106 0 0 chr12 32172682 32172767 -112109722 - L1PA10 LINE L1 -8 6160 6076 1125 268 80 11 chr12 32172767 32172978 -112109511 - Charlie7 DNA MER1_type -2193 419 169 324 308 82 27 chr12 32173079 32173225 -112109264 - MIR3 SINE MIR -52 156 3 1772 149 0 29 chr12 32173633 32173941 -112108548 + AluSx SINE Alu 1 299 -13 7541 32 1 8 chr12 32174279 32175369 -112107120 + L1PA4 LINE L1 5087 6171 0 1190 157 0 5 chr12 32175715 32175912 -112106577 - L1PA15 LINE L1 0 6165 5970 24 32 0 0 chr12 32176010 32176041 -112106448 + AT_rich Low_complexity Low_complexity 1 31 0 329 325 95 43 chr12 32177211 32177442 -112105047 - MIR SINE MIR -17 245 3 408 289 62 99 chr12 32177468 32177741 -112104748 + L1MC4a LINE L1 5724 5986 -135 391 277 17 42 chr12 32177967 32178086 -112104403 - L2 LINE L2 0 3272 3157 2252 94 0 0 chr12 32178462 32178761 -112103728 + AluSg SINE Alu 1 299 -11 2245 160 6 3 chr12 32179057 32179419 -112103070 - MLT1A1 LTR MaLR -2 363 1 27 62 0 0 chr12 32179929 32179977 -112102512 + AT_rich Low_complexity Low_complexity 1 48 0 190 224 0 20 chr12 32180117 32180166 -112102323 + L2 LINE L2 3224 3271 -1 209 300 57 14 chr12 32181425 32181495 -112100994 - MIR SINE MIR -119 89 17 835 214 10 42 chr12 32182618 32182810 -112099679 + MIR SINE MIR 55 240 -22 396 307 70 14 chr12 32182841 32183056 -112099433 - L1ME LINE L1 -396 5774 5548 1061 237 70 106 chr12 32183106 32183200 -112099289 - LTR28 LTR ERV1 -131 505 409 2264 153 23 3 chr12 32183200 32183554 -112098935 - THE1B LTR MaLR -3 361 1 1061 237 70 106 chr12 32183554 32184001 -112098488 - LTR28 LTR ERV1 -227 409 1 337 335 43 32 chr12 32184001 32184186 -112098303 - L1ME LINE L1 -631 5543 5357 564 306 86 32 chr12 32184200 32184733 -112097756 - L1ME LINE L1 -842 5304 4743 370 294 129 42 chr12 32184786 32186370 -112096119 - L1ME LINE L1 -1488 4658 2786 213 39 0 0 chr12 32186476 32186502 -112095987 + (TTCTCC)n Simple_repeat Simple_repeat 6 31 0 1650 178 21 0 chr12 32186502 32186778 -112095711 - AluJb SINE Alu -27 285 1 1003 121 6 12 chr12 32187432 32187478 -112095011 + (GGAA)n Simple_repeat Simple_repeat 1 217 0 1003 121 6 12 chr12 32187478 32187651 -112094838 + (GGAA)n Simple_repeat Simple_repeat 2 173 0 198 343 0 15 chr12 32188145 32188212 -112094277 + L3 LINE CR1 722 787 -790 1578 158 24 0 chr12 32188927 32189180 -112093309 - AluJb SINE Alu -5 307 49 189 388 89 24 chr12 32189277 32189738 -112092751 + L2 LINE L2 2342 2832 -482 193 309 29 0 chr12 32189943 32190011 -112092478 + L2 LINE L2 3186 3255 -17 375 60 0 0 chr12 32190011 32190061 -112092428 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 454 300 84 16 chr12 32190271 32190461 -112092028 - MIR SINE MIR -56 206 4 241 159 0 0 chr12 32190754 32190798 -112091691 + L3 LINE CR1 1341 1384 -193 2091 128 7 0 chr12 32191091 32191388 -112091101 + AluSx SINE Alu 1 299 -13 272 98 0 0 chr12 32191988 32192029 -112090460 - MIR SINE MIR -64 144 104 409 156 10 73 chr12 32193785 32193881 -112088608 - MIR SINE MIR -100 162 73 220 231 46 46 chr12 32194796 32194861 -112087628 + MIR SINE MIR 38 102 -106 1058 222 9 4 chr12 32195917 32196147 -112086342 - MIR SINE MIR 0 262 32 2157 139 0 0 chr12 32196538 32196841 -112085648 + AluSx SINE Alu 1 303 -9 1982 149 3 3 chr12 32198154 32198449 -112084040 - AluSx SINE Alu -17 295 1 365 242 102 45 chr12 32198730 32198887 -112083602 + MIR3 SINE MIR 20 185 -23 4155 170 66 41 chr12 32198983 32199805 -112082684 + MER21B LTR ERV1 1 842 -21 447 268 43 0 chr12 32199901 32200039 -112082450 - L1ME4a LINE L1 -1 6120 5977 1249 122 76 5 chr12 32200046 32200243 -112082246 + MER2 DNA MER2_type 1 211 -134 917 228 0 0 chr12 32200282 32200444 -112082045 + Tigger3(Golem) DNA MER2_type 2 163 -2866 * 5313 121 32 16 chr12 32200438 32201291 -112081198 + Tigger3(Golem) DNA MER2_type 2163 3028 -1 1184 173 98 26 chr12 32201366 32201703 -112080786 - MSTC LTR MaLR 0 428 34 302 270 79 16 chr12 32201773 32201899 -112080590 + L1ME LINE L1 6 139 -5931 8083 210 21 21 chr12 32202887 32205084 -112077405 + L1M2a LINE L1 634 2842 -4326 860 253 58 35 chr12 32205090 32205438 -112077051 + L1M2a LINE L1 3283 3638 -3529 431 271 33 81 chr12 32205464 32205674 -112076815 + L1ME3A LINE L1 5911 6110 -60 30 69 0 0 chr12 32205812 32205870 -112076619 + AT_rich Low_complexity Low_complexity 1 58 0 274 248 79 0 chr12 32206013 32206114 -112076375 + L1MC4 LINE L1 7929 8037 -5 11450 60 9 1 chr12 32206251 32206918 -112075571 - L1PA6 LINE L1 0 6154 5494 2325 101 0 3 chr12 32206918 32207216 -112075273 - AluY SINE Alu -14 297 1 11450 60 9 1 chr12 32207216 32208781 -112073708 - L1PA6 LINE L1 -660 5494 3912 571 76 0 0 chr12 32208781 32208859 -112073630 - L1PA5 LINE L1 -1 6153 6075 27293 100 13 10 chr12 32208859 32212743 -112069746 - L1PA6 LINE L1 -2232 3914 22 189 343 59 46 chr12 32214529 32214768 -112067721 + L2 LINE L2 2736 2977 -337 266 304 161 9 chr12 32214952 32215064 -112067425 - L2 LINE L2 -18 3254 3126 1025 258 111 11 chr12 32215085 32215632 -112066857 + L2 LINE L2 2707 3313 0 406 289 20 27 chr12 32215837 32215986 -112066503 - L2 LINE L2 -4 3309 3162 480 289 30 0 chr12 32216046 32216181 -112066308 + MIR SINE MIR 9 147 -115 335 182 91 26 chr12 32216186 32216263 -112066226 + LTR8 LTR ERV1 1 82 -609 1498 200 74 99 chr12 32216323 32216826 -112065663 + LTR8A LTR ERV1 187 676 -51 2073 139 0 0 chr12 32216826 32217120 -112065369 - AluSx SINE Alu -18 294 1 1498 200 74 99 chr12 32217120 32217171 -112065318 + LTR8A LTR ERV1 676 727 0 181 219 62 0 chr12 32217175 32217239 -112065250 + MIR SINE MIR 153 220 -42 492 110 20 20 chr12 32218106 32218206 -112064283 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 510 148 241 19 chr12 32218211 32218319 -112064170 - FLAM_C SINE Alu -1 132 1 245 244 105 12 chr12 32218322 32218408 -112064081 + L2 LINE L2 3178 3271 -1 336 304 27 0 chr12 32218579 32218691 -112063798 + MIR3 SINE MIR 53 167 -41 1954 139 81 23 chr12 32218753 32219097 -112063392 + THE1B LTR MaLR 1 364 0 198 0 0 0 chr12 32219376 32219398 -112063091 + (CA)n Simple_repeat Simple_repeat 1 22 0 646 260 20 30 chr12 32219522 32219722 -112062767 + MIR SINE MIR 3 200 -62 516 164 46 186 chr12 32219815 32220078 -112062411 + L1MC4 LINE L1 7554 7779 -263 441 0 0 0 chr12 32220951 32221000 -112061489 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 587 108 11 0 chr12 32221652 32221745 -112060744 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 1554 158 4 8 chr12 32222363 32222640 -112059849 + AluSx SINE Alu 30 305 0 562 256 30 6 chr12 32222716 32222880 -112059609 + MIR SINE MIR 92 259 -3 335 313 173 7 chr12 32223000 32223150 -112059339 + MER20B DNA MER1_type 1 175 -608 402 184 128 9 chr12 32223206 32223315 -112059174 + MLT1L LTR MaLR 167 288 -327 248 331 21 21 chr12 32223411 32223553 -112058936 + MLT1L LTR MaLR 466 607 -8 526 145 179 17 chr12 32223609 32223726 -112058763 - MLT1A1 LTR MaLR -228 137 2 4921 182 78 24 chr12 32223727 32223896 -112058593 + L1MD1 LINE L1 4444 4602 -1640 208 0 30 30 chr12 32223896 32223929 -112058560 + (TA)n Simple_repeat Simple_repeat 1 33 0 4921 182 78 24 chr12 32223929 32224422 -112058067 + L1MD1 LINE L1 4602 5067 -1175 2440 71 10 0 chr12 32224422 32224718 -112057771 + AluY SINE Alu 1 299 -12 4921 182 78 24 chr12 32224718 32225240 -112057249 + L1MD1 LINE L1 5067 5559 -683 1725 178 3 25 chr12 32225240 32225554 -112056935 + AluJo SINE Alu 3 309 -3 4921 182 78 24 chr12 32225554 32226079 -112056410 + L1MD1 LINE L1 5559 6242 0 441 92 40 13 chr12 32226855 32226931 -112055558 + LTR15 LTR ERV1 410 487 -6 292 231 67 58 chr12 32227864 32227968 -112054521 + MIR SINE MIR 79 183 -79 455 218 45 9 chr12 32227974 32228084 -112054405 - MLT1J LTR MaLR -7 504 391 564 231 14 0 chr12 32228100 32228243 -112054246 + MER104 DNA Tc2 6 150 -30 541 219 74 107 chr12 32228270 32228577 -112053912 - MLT1L LTR MaLR -149 466 99 240 313 0 16 chr12 32228649 32228713 -112053776 + L2 LINE L2 3185 3247 -25 420 37 0 0 chr12 32228737 32228791 -112053698 + (CA)n Simple_repeat Simple_repeat 2 55 0 239 329 109 7 chr12 32229134 32229271 -112053218 - MIR SINE MIR -78 184 34 441 260 118 39 chr12 32229908 32230162 -112052327 + L2 LINE L2 3030 3303 -10 755 186 0 0 chr12 32230364 32230482 -112052007 + FLAM_C SINE Alu 3 120 -23 198 0 0 0 chr12 32230482 32230504 -112051985 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 555 312 32 28 chr12 32230861 32231108 -112051381 + L2 LINE L2 2630 2877 -437 1777 146 69 39 chr12 32231217 32231581 -112050908 - THE1C LTR MaLR 0 375 1 539 287 75 32 chr12 32231603 32231885 -112050604 + L2 LINE L2 3020 3313 0 195 152 0 0 chr12 32232051 32232097 -112050392 + CT-rich Low_complexity Low_complexity 2 47 0 198 313 0 0 chr12 32232103 32232167 -112050322 + MIR3 SINE MIR 110 173 -35 233 296 176 0 chr12 32232768 32232876 -112049613 + MIR3 SINE MIR 67 193 -15 217 325 62 0 chr12 32233337 32233417 -112049072 - L2 LINE L2 -32 3240 3156 404 345 60 12 chr12 32233459 32233627 -112048862 - MER91A DNA MER1_type -5 191 16 319 363 28 32 chr12 32234118 32234366 -112048123 - L2 LINE L2 -194 3078 2832 719 280 0 0 chr12 32234581 32234738 -112047751 - MER45A DNA AcHobo -21 157 1 234 128 0 0 chr12 32234792 32234831 -112047658 + (GA)n Simple_repeat Simple_repeat 1 39 0 1224 148 16 146 chr12 32235985 32236123 -112046366 - MER33 DNA MER1_type -2261 324 170 1555 98 5 0 chr12 32236123 32236347 -112046142 - L1PA14 LINE L1 -1 6160 5936 1224 148 16 146 chr12 32236347 32236579 -112045910 - MER33 DNA MER1_type -2415 170 2 2309 106 3 0 chr12 32236698 32236999 -112045490 + AluSx SINE Alu 1 302 -10 317 250 68 34 chr12 32237038 32237214 -112045275 - L1M4 LINE L1 -3792 2354 2173 233 310 46 0 chr12 32237730 32237817 -112044672 + L1MC4 LINE L1 6615 6705 -1337 296 301 0 48 chr12 32237872 32237980 -112044509 + L1ME LINE L1 5636 5735 -386 2307 96 7 3 chr12 32237980 32238281 -112044208 + AluSx SINE Alu 1 302 -10 296 301 0 48 chr12 32238281 32238338 -112044151 + L1ME LINE L1 5735 5793 -328 207 0 0 0 chr12 32238806 32238829 -112043660 + (A)n Simple_repeat Simple_repeat 1 23 0 2624 68 0 0 chr12 32239691 32240000 -112042489 + AluY SINE Alu 1 309 -2 396 0 0 0 chr12 32240142 32240186 -112042303 + (TG)n Simple_repeat Simple_repeat 2 45 0 2273 147 40 19 chr12 32240602 32241025 -112041464 - MSTB1 LTR MaLR 0 432 1 625 178 31 31 chr12 32241537 32241666 -112040823 + MER3 DNA MER1_type 40 168 -41 * 1214 191 93 25 chr12 32241638 32242037 -112040452 + MER3 DNA MER1_type 2190 2615 0 832 266 46 19 chr12 32242461 32242720 -112039769 - LTR16A LTR ERVL -7 443 178 214 357 93 22 chr12 32242930 32243252 -112039237 + L2 LINE L2 2059 2403 -911 206 286 113 23 chr12 32246176 32246309 -112036180 + MIR3 SINE MIR 20 164 -44 * 385 248 248 31 chr12 32246307 32246561 -112035928 + L2 LINE L2 3005 3313 0 465 292 15 0 chr12 32248032 32248162 -112034327 + MIR SINE MIR 21 152 -110 2497 89 0 0 chr12 32249170 32249472 -112033017 + AluSx SINE Alu 1 302 -10 294 282 13 0 chr12 32249507 32249585 -112032904 + L2 LINE L2 3230 3308 -5 1791 163 31 31 chr12 32249642 32250029 -112032460 - MER45B DNA AcHobo 0 1040 654 253 197 33 0 chr12 32250809 32250870 -112031619 - MIR SINE MIR -127 135 73 268 213 33 0 chr12 32250912 32250973 -112031516 - MIR SINE MIR -127 135 73 795 61 0 0 chr12 32251956 32252055 -112030434 - THE1A LTR MaLR -1 354 256 1272 114 64 18 chr12 32252116 32252336 -112030153 - MER30 DNA MER1_type 0 230 1 304 279 82 16 chr12 32252371 32252493 -112029996 - MIR SINE MIR -105 157 28 2192 97 0 0 chr12 32252946 32253224 -112029265 - AluSq SINE Alu -3 310 33 275 255 59 118 chr12 32253858 32254011 -112028478 + L2 LINE L2 3127 3270 -2 714 241 129 65 chr12 32255070 32255250 -112027239 - MLT1J LTR MaLR -4 507 340 901 143 74 6 chr12 32255250 32255425 -112027064 + MER5A DNA MER1_type 3 189 0 714 241 129 65 chr12 32255425 32255717 -112026772 - MLT1J LTR MaLR -171 340 5 277 257 43 0 chr12 32256115 32256185 -112026304 + MER91 DNA MER1_type 1 73 -67 2133 115 10 30 chr12 32256523 32256827 -112025662 + AluSx SINE Alu 1 298 -14 204 67 0 0 chr12 32257873 32257903 -112024586 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 412 233 68 92 chr12 32258230 32258327 -112024162 + MIR SINE MIR 104 202 -60 1917 133 62 19 chr12 32258327 32258650 -112023839 + MER1B DNA MER1_type 1 337 0 1373 201 0 0 chr12 32258660 32258899 -112023590 - MER8 DNA MER2_type 0 239 1 412 233 68 92 chr12 32258899 32258953 -112023536 + MIR SINE MIR 211 262 0 287 173 284 12 chr12 32259050 32259158 -112023331 - MIR SINE MIR -67 141 41 379 275 34 53 chr12 32259837 32260033 -112022456 - MIR SINE MIR -62 146 8 477 263 51 19 chr12 32260926 32261082 -112021407 + MIR SINE MIR 102 262 0 296 310 56 76 chr12 32261110 32261307 -112021182 + MIR3 SINE MIR 9 201 -7 2034 145 54 10 chr12 32261678 32262085 -112020404 - L1MA8 LINE L1 0 6291 5867 1668 121 4 0 chr12 32262086 32262343 -112020146 + L1MA8 LINE L1 5632 5889 -402 198 333 28 0 chr12 32262635 32262743 -112019746 + L2 LINE L2 2925 3035 -237 189 133 0 0 chr12 32263694 32263724 -112018765 + MER5A DNA MER1_type 10 39 -150 293 238 12 50 chr12 32263743 32263823 -112018666 - MER81 DNA DNA -36 78 2 628 168 42 17 chr12 32263830 32263949 -112018540 + MER5A DNA MER1_type 67 188 -1 2554 88 8 0 chr12 32264982 32265334 -112017155 - THE1A LTR MaLR 0 355 1 11636 80 17 0 chr12 32265334 32266887 -112015602 - THE1A-int LTR MaLR 0 1580 1 2678 60 3 35 chr12 32266887 32267254 -112015235 - THE1A LTR MaLR 0 355 1 217 280 151 37 chr12 32267396 32267614 -112014875 + L2 LINE L2 1937 2179 -1135 280 259 201 22 chr12 32267832 32267971 -112014518 + Charlie7 DNA MER1_type 1 164 -2448 1083 239 47 14 chr12 32268134 32268410 -112014079 - MLT1J LTR MaLR -10 501 217 906 293 36 0 chr12 32268436 32268770 -112013719 + L1M4 LINE L1 2374 2719 -3427 551 249 72 22 chr12 32268784 32268965 -112013524 - MLT1J LTR MaLR -316 195 6 773 302 58 4 chr12 32269008 32269250 -112013239 + MIR SINE MIR 3 257 -5 453 190 11 34 chr12 32269250 32269373 -112013116 - MIR SINE MIR -92 116 5 271 340 20 68 chr12 32269425 32269572 -112012917 + MIR3 SINE MIR 64 203 -5 968 211 69 13 chr12 32270752 32271003 -112011486 - MIR SINE MIR 0 262 9 230 212 20 152 chr12 32270995 32271094 -112011395 + MIR3 SINE MIR 97 182 -26 * 266 315 134 7 chr12 32272287 32272436 -112010053 + MIR SINE MIR 7 174 -88 1367 172 113 59 chr12 32272505 32272947 -112009542 - MER110A LTR ERV1 0 468 3 1799 198 47 21 chr12 32273118 32273542 -112008947 - MLT1C LTR MaLR -27 440 6 406 230 33 46 chr12 32273880 32274032 -112008457 + MER112 DNA MER1_type 100 249 -11 324 338 21 28 chr12 32275062 32275207 -112007282 + MIR3 SINE MIR 24 167 -41 417 158 0 0 chr12 32275207 32275289 -112007200 + CT-rich Low_complexity Low_complexity 2 83 0 1221 106 0 0 chr12 32275289 32275469 -112007020 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 317 316 26 0 chr12 32276996 32277110 -112005379 - MIR SINE MIR -139 123 7 1509 77 0 0 chr12 32277191 32277373 -112005116 + AluSg/x SINE Alu 121 302 -10 207 0 0 0 chr12 32277695 32277718 -112004771 + (TGGG)n Simple_repeat Simple_repeat 3 25 0 2183 113 31 0 chr12 32278332 32278623 -112003866 + AluSx SINE Alu 3 302 -10 547 305 6 23 chr12 32278902 32279079 -112003410 - MIR3 SINE MIR -28 180 7 474 235 26 9 chr12 32279291 32279406 -112003083 - MIR3 SINE MIR -49 159 43 749 172 23 35 chr12 32279574 32279748 -112002741 - MER104 DNA MER2_type -4 176 5 382 253 61 10 chr12 32279940 32280039 -112002450 + MIR SINE MIR 40 143 -65 306 324 21 35 chr12 32280761 32280954 -112001535 + MIR SINE MIR 3 192 -62 557 265 157 10 chr12 32281141 32281345 -112001144 + MIR SINE MIR 16 249 -13 479 216 6 23 chr12 32281851 32282027 -112000462 + CT-rich Low_complexity Low_complexity 6 178 0 917 236 36 68 chr12 32282048 32282463 -112000026 - L1MC5 LINE L1 -51 7910 7509 247 344 26 33 chr12 32283226 32283377 -111999112 - MIR SINE MIR -28 234 85 1448 195 50 44 chr12 32283436 32283483 -111999006 + MER88 LTR ERVL 79 124 -340 1131 84 200 5 chr12 32283483 32283673 -111998816 - MER30 DNA MER1_type 0 230 4 1448 195 50 44 chr12 32283673 32284009 -111998480 + MER88 LTR ERVL 124 464 0 215 206 143 0 chr12 32284075 32284138 -111998351 - MIR3 SINE MIR -36 172 101 204 267 17 17 chr12 32284474 32284534 -111997955 - L3 LINE CR1 -7 1570 1511 308 303 22 0 chr12 32285227 32285316 -111997173 + (CACG)n Simple_repeat Simple_repeat 4 94 0 201 299 92 11 chr12 32286434 32286521 -111995968 + MIR SINE MIR 20 113 -95 1937 136 44 14 chr12 32289031 32289150 -111993339 + AluJo SINE Alu 1 115 -197 180 0 0 0 chr12 32289150 32289170 -111993319 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1937 136 44 14 chr12 32289170 32289344 -111993145 + AluJo SINE Alu 115 303 -9 269 239 36 65 chr12 32289994 32290132 -111992357 - L2 LINE L2 -219 3053 2920 550 316 19 0 chr12 32290685 32290843 -111991646 + MIR SINE MIR 1 161 -101 520 226 35 0 chr12 32291853 32291968 -111990521 - MER20 DNA MER1_type 0 219 101 232 418 22 8 chr12 32292172 32292306 -111990183 - L2 LINE L2 -10 3262 3127 241 212 61 0 chr12 32292590 32292656 -111989833 - L2 LINE L2 -345 2968 2899 225 278 0 0 chr12 32293884 32293938 -111988551 + MER91 DNA MER1_type 54 107 -89 246 179 0 36 chr12 32294520 32294576 -111987913 + Zaphod DNA AcHobo 3978 4031 0 472 339 102 42 chr12 32295494 32295925 -111986564 + L2 LINE L2 2813 3269 -3 389 311 17 8 chr12 32297260 32297379 -111985110 + MIR SINE MIR 26 145 -117 904 188 94 5 chr12 32297845 32298037 -111984452 - MER3 DNA MER1_type 0 209 1 410 220 30 20 chr12 32298942 32299042 -111983447 - MIR SINE MIR -33 229 129 238 352 7 7 chr12 32301011 32301153 -111981336 + (TG)n Simple_repeat Simple_repeat 1 142 0 186 103 0 0 chr12 32301165 32301194 -111981295 + (TG)n Simple_repeat Simple_repeat 2 30 0 1466 152 67 18 chr12 32301196 32301479 -111981010 - MER2 DNA MER2_type -1 344 48 533 289 132 0 chr12 32301802 32302006 -111980483 + MIR SINE MIR 20 250 -12 2101 122 6 3 chr12 32302120 32302431 -111980058 - AluSx SINE Alu 0 312 1 377 231 194 0 chr12 32302434 32302542 -111979947 - MIR SINE MIR -60 148 20 577 268 67 10 chr12 32302737 32302931 -111979558 + MIR SINE MIR 58 262 0 394 305 34 8 chr12 32303826 32303944 -111978545 + MIR3 SINE MIR 34 154 -54 184 321 86 12 chr12 32304205 32304286 -111978203 + L3 LINE CR1 224 310 -1267 620 365 96 58 chr12 32304292 32304915 -111977574 + L3 LINE CR1 417 1098 -479 2051 94 11 0 chr12 32304915 32305190 -111977299 + AluSc SINE Alu 16 293 -16 620 365 96 58 chr12 32305190 32305629 -111976860 + L3 LINE CR1 1098 1519 -58 2105 106 3 7 chr12 32305882 32306184 -111976305 + AluSg SINE Alu 1 301 -9 261 353 17 25 chr12 32306196 32306315 -111976174 - MER5B DNA MER1_type -60 118 1 258 277 135 14 chr12 32306315 32306444 -111976045 - MIR3 SINE MIR -51 157 12 527 283 71 80 chr12 32306648 32306973 -111975516 - L2 LINE L2 -32 3240 2919 289 274 53 11 chr12 32307119 32307214 -111975275 - MIR SINE MIR -68 140 42 216 135 0 0 chr12 32307711 32307748 -111974741 + (TG)n Simple_repeat Simple_repeat 1 37 0 308 184 105 13 chr12 32309059 32309135 -111973354 + MER5A DNA MER1_type 19 101 -88 433 274 123 0 chr12 32309198 32309344 -111973145 + MER5A DNA MER1_type 2 165 -24 221 326 113 14 chr12 32312284 32312425 -111970064 - MIR SINE MIR -13 249 95 906 140 67 11 chr12 32313308 32313487 -111969002 - MER5A DNA MER1_type 0 189 1 2153 108 150 26 chr12 32314902 32315283 -111967206 - MSTA LTR MaLR 0 428 1 1720 106 0 157 chr12 32316536 32316611 -111965878 - MER47A DNA MER2_type -1957 366 281 1902 144 16 13 chr12 32316611 32316917 -111965572 + AluJo SINE Alu 6 312 0 1720 106 0 157 chr12 32316917 32317275 -111965214 - MER47A DNA MER2_type -2042 281 1 527 315 73 23 chr12 32317995 32318214 -111964275 - MIR SINE MIR -13 249 20 358 344 57 54 chr12 32318485 32319168 -111963321 + L2 LINE L2 2500 3259 -13 266 333 141 15 chr12 32325692 32325890 -111956599 - L3 LINE CR1 -166 1411 1189 207 362 45 59 chr12 32326709 32327063 -111955426 + L2 LINE L2 2889 3237 -35 448 315 31 0 chr12 32327363 32327490 -111954999 + MIR3 SINE MIR 69 199 -9 365 219 164 68 chr12 32327498 32327644 -111954845 - MIR SINE MIR -73 189 30 183 247 212 0 chr12 32327725 32327810 -111954679 - MIR SINE MIR -71 191 89 1744 167 10 17 chr12 32328084 32328384 -111954105 + AluJb SINE Alu 1 298 -14 1345 108 0 11 chr12 32328682 32328868 -111953621 + AluSx SINE Alu 1 184 -128 235 214 0 86 chr12 32330399 32330469 -111952020 + MIR SINE MIR 95 158 -104 1224 167 76 58 chr12 32330888 32331198 -111951291 + AluJb SINE Alu 5 319 0 1191 151 64 0 chr12 32331381 32331632 -111950857 + MER33 DNA MER1_type 1 254 -70 308 358 91 41 chr12 32331918 32332139 -111950350 - MIR SINE MIR -30 232 1 473 135 0 87 chr12 32333614 32333718 -111948771 + FLAM_A SINE Alu 47 141 -1 1150 211 35 10 chr12 32333718 32334007 -111948482 + L1MB3 LINE L1 5885 6180 -3 376 139 0 47 chr12 32334024 32334110 -111948379 + (GGAAA)n Simple_repeat Simple_repeat 2 83 0 608 158 10 105 chr12 32334254 32334463 -111948026 - MER53 DNA DNA 0 189 1 1377 209 44 9 chr12 32334625 32334974 -111947515 + MLT1A2 LTR MaLR 1 414 -14 238 312 97 0 chr12 32335124 32335217 -111947272 + MIR SINE MIR 63 164 -98 664 168 6 6 chr12 32335354 32335533 -111946956 + (CA)n Simple_repeat Simple_repeat 1 179 0 788 272 82 21 chr12 32336621 32336826 -111945663 + MIR SINE MIR 4 228 -34 2485 149 22 0 chr12 32336826 32337234 -111945255 + L1MB5 LINE L1 5746 6162 -12 788 272 82 21 chr12 32337234 32337271 -111945218 + MIR SINE MIR 228 261 -1 389 328 42 60 chr12 32337676 32338078 -111944411 - MLT1J LTR MaLR -6 505 111 295 262 16 40 chr12 32338155 32338281 -111944208 - L2 LINE L2 -208 3064 2942 587 241 211 38 chr12 32338299 32338669 -111943820 - MLT1J2 LTR MaLR -16 434 1 335 285 269 21 chr12 32339074 32339316 -111943173 - L3 LINE CR1 -21 1556 1255 2328 208 35 22 chr12 32339504 32340013 -111942476 - LTR40a LTR ERVL 0 519 4 1397 274 130 22 chr12 32340353 32341028 -111941461 + L1PBa LINE L1 6 753 -6110 374 214 0 0 chr12 32341063 32341133 -111941356 + L1PBa LINE L1 1094 1163 -5700 9021 157 29 4 chr12 32341155 32343657 -111938832 + L1PBa LINE L1 1337 3901 -2961 1321 55 0 0 chr12 32343673 32343837 -111938652 - AluY SINE Alu -12 299 136 5815 106 4 0 chr12 32343837 32344621 -111937868 + HERVK3 LTR ERVK 6451 7237 -6 2473 167 9 23 chr12 32344626 32345064 -111937425 + LTR3 LTR ERVK 1 432 0 403 97 0 28 chr12 32345070 32345142 -111937347 + L1PB1 LINE L1 6079 6148 -3 390 284 88 31 chr12 32345311 32345572 -111936917 + L1MC4a LINE L1 5296 5571 -2237 376 241 9 35 chr12 32345604 32345720 -111936769 + L1MC4a LINE L1 5699 5811 -1997 1490 194 0 36 chr12 32345799 32346108 -111936381 - AluJo SINE Alu -14 298 1 311 315 47 24 chr12 32346108 32346235 -111936254 + L1MC4a LINE L1 5801 5930 -1878 2290 50 28 0 chr12 32346246 32346529 -111935960 - AluY SINE Alu -20 291 1 679 188 77 44 chr12 32346969 32347150 -111935339 + MER5A DNA MER1_type 1 187 -2 307 267 40 0 chr12 32347216 32347317 -111935172 - MER5A DNA MER1_type -83 106 2 201 274 104 28 chr12 32347561 32347667 -111934822 - MIR SINE MIR -57 151 38 396 0 0 0 chr12 32349144 32349188 -111933301 + (TC)n Simple_repeat Simple_repeat 2 45 0 342 0 0 0 chr12 32349187 32349225 -111933264 + (TG)n Simple_repeat Simple_repeat 1 38 0 * 287 363 49 0 chr12 32350205 32350307 -111932182 + MIR3 SINE MIR 85 191 -17 186 150 0 0 chr12 32352270 32352310 -111930179 + (A)n Simple_repeat Simple_repeat 1 40 0 240 248 37 55 chr12 32352312 32352421 -111930068 + L1ME4a LINE L1 5964 6070 -51 1590 188 0 13 chr12 32352561 32352865 -111929624 + AluJo SINE Alu 6 305 -7 1321 118 51 0 chr12 32355296 32355491 -111926998 - AluSq SINE Alu -108 205 1 962 147 0 0 chr12 32356310 32356467 -111926022 + AluJb SINE Alu 137 293 -19 223 290 80 20 chr12 32356895 32356995 -111925494 - L2 LINE L2 -220 3052 2947 1804 242 106 29 chr12 32358138 32358927 -111923562 - L1MDb LINE L1 -4799 1607 792 575 181 152 0 chr12 32359603 32359741 -111922748 - L1MDb LINE L1 -5958 438 280 425 254 77 81 chr12 32359921 32360169 -111922320 - HAL1 LINE L1 -1220 1287 1041 1517 165 30 3 chr12 32360428 32360725 -111921764 - AluJb SINE Alu -7 305 1 228 286 14 29 chr12 32361200 32361270 -111921219 - L2 LINE L2 -50 3222 3154 21 0 0 0 chr12 32361490 32361511 -111920978 + AT_rich Low_complexity Low_complexity 1 21 0 7496 162 21 23 chr12 32361515 32363828 -111918661 - L1PB1 LINE L1 -6 6145 3846 1593 178 3 11 chr12 32363828 32364115 -111918374 - AluSx SINE Alu -27 285 1 7496 162 21 23 chr12 32364115 32364257 -111918232 - L1PB1 LINE L1 -2305 3846 3705 298 294 23 40 chr12 32364340 32364447 -111918042 - L1MC/D LINE L1 -2006 5802 5698 1204 117 0 0 chr12 32364447 32364618 -111917871 - L1PA10 LINE L1 -1 6167 5997 298 294 23 40 chr12 32364618 32364687 -111917802 - L1MC/D LINE L1 -2110 5698 5629 1942 124 61 28 chr12 32364842 32365205 -111917284 - THE1C LTR MaLR 0 375 1 415 267 70 33 chr12 32365323 32365587 -111916902 - HAL1b LINE L1 -770 1657 1404 2305 129 0 8 chr12 32365587 32365951 -111916538 - L1PA13 LINE L1 -1 6162 5802 573 225 60 28 chr12 32365976 32366158 -111916331 - L1MC5 LINE L1 -63 7898 7711 301 309 21 32 chr12 32366360 32366454 -111916035 - MIR SINE MIR -95 113 21 562 293 141 0 chr12 32366682 32366931 -111915558 - L2 LINE L2 -18 3295 3012 2668 205 25 9 chr12 32366932 32367493 -111914996 - LTR24B LTR ERV1 -6 570 1 535 276 58 36 chr12 32367499 32367724 -111914765 - L2 LINE L2 -353 2961 2732 402 340 89 0 chr12 32368258 32368461 -111914028 + MIR SINE MIR 13 233 -29 612 339 106 9 chr12 32369091 32369753 -111912736 + L2 LINE L2 2557 3309 -4 817 213 0 0 chr12 32369837 32369987 -111912502 + FRAM SINE Alu 1 145 -31 181 50 25 50 chr12 32370112 32370152 -111912337 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 329 168 176 69 chr12 32370160 32370291 -111912198 + L1ME4a LINE L1 5966 6110 -11 528 197 27 132 chr12 32371178 32371412 -111911077 - MLT1C LTR MaLR -223 244 28 279 79 0 0 chr12 32371904 32371942 -111910547 + (TG)n Simple_repeat Simple_repeat 1 38 0 285 333 0 0 chr12 32372324 32372408 -111910081 + (CA)n Simple_repeat Simple_repeat 1 84 0 337 313 55 43 chr12 32372519 32372682 -111909807 + MIR SINE MIR 51 215 -47 234 264 0 0 chr12 32373576 32373629 -111908860 - MIR SINE MIR -6 256 204 366 200 13 0 chr12 32373886 32373961 -111908528 + MER4C LTR ERV1 390 465 0 2201 204 24 44 chr12 32374626 32375131 -111907358 + LTR42 LTR ERVL 1 495 0 1030 279 46 29 chr12 32375274 32375621 -111906868 + MLT1J LTR MaLR 81 433 -78 182 210 97 32 chr12 32375684 32375746 -111906743 + MIR SINE MIR 172 237 -25 2239 85 0 19 chr12 32375959 32376276 -111906213 + AluY SINE Alu 1 311 0 1216 235 71 0 chr12 32376562 32376689 -111905800 + AluJo SINE Alu 2 119 -183 212 0 0 35 chr12 32376689 32376718 -111905771 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1216 235 71 0 chr12 32376718 32376871 -111905618 + AluJo SINE Alu 119 302 0 262 329 36 21 chr12 32376984 32377124 -111905365 + MER87 LTR ERV1 400 541 0 393 254 78 111 chr12 32377251 32377495 -111904994 + MER87-int LTR ERV1 54 289 -1497 2067 71 4 7 chr12 32377500 32377781 -111904708 - AluY SINE Alu -3 308 29 345 303 70 43 chr12 32378002 32378302 -111904187 + MER87-int LTR ERV1 460 767 -6355 1405 309 71 62 chr12 32378587 32379702 -111902787 + MER87-int LTR ERV1 937 2061 -5061 1616 325 56 36 chr12 32379744 32380631 -111901858 + MER87-int LTR ERV1 2208 3063 -4059 1565 197 0 16 chr12 32380631 32380936 -111901553 - AluJo SINE Alu -12 300 1 1616 325 56 36 chr12 32380936 32381247 -111901242 + MER87-int LTR ERV1 3063 3366 -3756 1414 162 31 119 chr12 32381265 32381762 -111900727 + MER4A LTR ERV1 157 465 0 789 182 45 0 chr12 32381764 32381918 -111900571 - Tigger3b DNA MER2_type -149 1082 922 3786 168 76 86 chr12 32381927 32382861 -111899628 + MER21A LTR ERV1 1 925 -6 4870 143 82 8 chr12 32382868 32383418 -111899071 - Tigger3b DNA MER2_type -2101 927 288 1398 203 13 23 chr12 32383418 32383718 -111898771 + AluJo SINE Alu 1 297 -15 4870 143 82 8 chr12 32383718 32384030 -111898459 - Tigger3b DNA MER2_type -2740 288 1 4300 175 45 60 chr12 32384700 32384996 -111897493 - L1MB2 LINE L1 0 6171 5872 1947 155 65 30 chr12 32384996 32385361 -111897128 + MLT2D LTR ERVL 1 383 -31 306 0 0 0 chr12 32385361 32385395 -111897094 + (CA)n Simple_repeat Simple_repeat 2 35 0 1947 155 65 30 chr12 32385395 32385429 -111897060 + MLT2D LTR ERVL 383 414 0 4300 175 45 60 chr12 32385429 32385805 -111896684 - L1MB2 LINE L1 -299 5872 5492 1708 179 0 13 chr12 32385805 32386113 -111896376 - AluJo SINE Alu -7 305 2 243 0 0 0 chr12 32386113 32386140 -111896349 + (TG)n Simple_repeat Simple_repeat 2 28 0 4300 175 45 60 chr12 32386140 32386747 -111895742 - L1MB2 LINE L1 -677 5494 4929 822 254 27 27 chr12 32387183 32387403 -111895086 + MSTB1 LTR MaLR 1 220 -212 678 286 22 43 chr12 32387469 32387700 -111894789 - MIR SINE MIR 0 262 37 2052 42 0 30 chr12 32387701 32387963 -111894526 - AluY SINE Alu -7 304 51 331 342 75 25 chr12 32388436 32388717 -111893772 + L2 LINE L2 2554 2848 -466 5756 113 47 36 chr12 32388717 32390232 -111892257 + pTR5 LTR ERV1 742 2438 0 407 132 13 26 chr12 32390430 32390506 -111891983 - L1M LINE L1 -794 5389 5315 276 268 57 73 chr12 32390834 32390957 -111891532 - MIR3 SINE MIR -30 178 58 597 162 9 18 chr12 32392406 32392517 -111889972 - MLT1A2 LTR MaLR 0 374 265 461 243 65 9 chr12 32392988 32393143 -111889346 + MIR SINE MIR 30 191 -66 483 269 151 21 chr12 32393263 32393449 -111889040 - L2 LINE L2 0 3313 3104 197 224 13 66 chr12 32393547 32393623 -111888866 - L2 LINE L2 -311 3002 2931 435 238 168 27 chr12 32394099 32394284 -111888205 + MIR SINE MIR 47 257 -5 2458 44 10 0 chr12 32395138 32395436 -111887053 + AluY SINE Alu 1 301 -10 2347 77 0 0 chr12 32396260 32396559 -111885930 - AluY SINE Alu -12 299 1 360 210 38 140 chr12 32396692 32396849 -111885640 - HAL1 LINE L1 -379 2128 1988 939 234 59 53 chr12 32396896 32397233 -111885256 - MLT1A2 LTR MaLR 0 374 36 513 100 100 22 chr12 32397233 32397323 -111885166 - FLAM_A SINE Alu -16 126 30 231 340 39 29 chr12 32397450 32397553 -111884936 - HAL1 LINE L1 -580 1927 1824 308 320 0 0 chr12 32397605 32397680 -111884809 - HAL1 LINE L1 -1631 876 802 350 317 207 32 chr12 32397708 32398330 -111884159 - HAL1 LINE L1 -1767 740 10 1493 202 11 11 chr12 32398330 32398617 -111883872 - AluJo SINE Alu -25 287 1 180 250 0 83 chr12 32399190 32399262 -111883227 + L2 LINE L2 3195 3260 -12 23 0 0 0 chr12 32399780 32399803 -111882686 + AT_rich Low_complexity Low_complexity 1 23 0 327 314 81 72 chr12 32399840 32400076 -111882413 - MIR SINE MIR -23 239 2 1454 223 20 70 chr12 32400277 32400680 -111881809 - MLT1B LTR MaLR 0 390 8 666 180 0 0 chr12 32400736 32400847 -111881642 + FLAM_A SINE Alu 10 120 -22 264 391 19 6 chr12 32402906 32403067 -111879422 - MIR SINE MIR -79 183 21 223 274 16 0 chr12 32403299 32403361 -111879128 - L2 LINE L2 -24 3248 3186 318 314 167 40 chr12 32403631 32403984 -111878505 + L2 LINE L2 2873 3270 -2 499 355 81 15 chr12 32404836 32405168 -111877321 - L2 LINE L2 -5 3267 2914 199 273 0 0 chr12 32408621 32408665 -111873824 - MIR SINE MIR -66 142 99 445 261 92 8 chr12 32408818 32408948 -111873541 - MIR SINE MIR -75 187 47 195 292 56 34 chr12 32409902 32409991 -111872498 - MIR SINE MIR -114 148 58 2126 89 6 22 chr12 32411006 32411320 -111871169 + AluSx SINE Alu 1 309 -3 222 316 82 0 chr12 32414872 32414970 -111867519 + MIR SINE MIR 46 151 -111 2294 73 0 3 chr12 32414970 32415270 -111867219 + AluY SINE Alu 1 299 -12 670 267 174 23 chr12 32416279 32416649 -111865840 - L1MC4 LINE L1 -807 7001 6534 2056 109 30 0 chr12 32416649 32416951 -111865538 - AluSx SINE Alu -1 311 1 670 267 174 23 chr12 32416951 32417094 -111865395 - L1MC4 LINE L1 -1274 6534 6414 436 286 33 14 chr12 32417214 32417427 -111865062 - L1MC4a LINE L1 -1538 6270 6054 569 267 157 38 chr12 32417662 32417899 -111864590 - L1MC4a LINE L1 -692 5642 5429 245 295 0 13 chr12 32417899 32417977 -111864512 - MER5B DNA MER1_type -101 77 1 2211 96 0 16 chr12 32424618 32424921 -111857568 + AluY SINE Alu 1 298 -13 480 210 58 62 chr12 32425545 32425802 -111856687 + L1MC5 LINE L1 7452 7707 -254 1665 151 0 66 chr12 32425802 32426134 -111856355 + AluSx SINE Alu 1 312 0 270 217 0 33 chr12 32426149 32426209 -111856280 + AluJ/FLAM SINE Alu 3 60 -242 363 251 123 14 chr12 32426220 32426439 -111856050 - L1MC4a LINE L1 -1603 4543 4301 507 33 0 0 chr12 32426452 32426513 -111855976 + (TG)n Simple_repeat Simple_repeat 2 62 0 1522 246 23 20 chr12 32426523 32426962 -111855527 + L1M4 LINE L1 3784 4223 -1923 931 176 37 42 chr12 32426962 32427178 -111855311 - AluJo SINE Alu 0 312 98 977 251 21 4 chr12 32428009 32428252 -111854237 - MLT1C LTR MaLR 0 467 221 396 40 0 0 chr12 32428268 32428318 -111854171 + (TG)n Simple_repeat Simple_repeat 2 51 0 450 195 25 34 chr12 32428318 32428436 -111854053 - MLT1C LTR MaLR -298 169 53 331 347 66 16 chr12 32429383 32429504 -111852985 + L1MC4 LINE L1 6577 6703 -1339 313 346 37 22 chr12 32429917 32430053 -111852436 - MIR SINE MIR -73 189 52 2796 210 41 31 chr12 32430941 32431642 -111850847 + L1MA9 LINE L1 5575 6282 -30 1872 138 3 35 chr12 32432997 32433315 -111849174 + AluSx SINE Alu 5 312 0 1256 115 60 0 chr12 32434092 32434292 -111848197 + L1MA2 LINE L1 6093 6304 0 888 115 14 20 chr12 32434989 32435137 -111847352 + HERVE LTR ERV1 3249 3395 -4418 932 121 7 20 chr12 32436466 32436615 -111845874 + HERVE LTR ERV1 3249 3395 -4418 228 319 94 44 chr12 32437000 32437393 -111845096 - SATR1 Satellite Satellite -21 743 28 263 305 20 35 chr12 32437647 32437847 -111844642 - SATR1 Satellite Satellite -131 339 143 882 86 71 21 chr12 32438111 32438251 -111844238 + HERVE LTR ERV1 3249 3395 -4418 233 289 14 43 chr12 32438462 32438673 -111843816 - SATR1 Satellite Satellite -101 369 165 4131 96 2 10 chr12 32438708 32439311 -111843178 + HERVE LTR ERV1 3249 3846 -3967 1427 274 80 48 chr12 32439322 32440565 -111841924 - SATR1 Satellite Satellite -90 1282 1 4142 97 2 10 chr12 32440600 32441199 -111841290 + HERVE LTR ERV1 3253 3846 -3967 1466 222 89 47 chr12 32441210 32441865 -111840624 - SATR1 Satellite Satellite 0 682 1 28 48 0 0 chr12 32442141 32442183 -111840306 + AT_rich Low_complexity Low_complexity 1 42 0 224 293 0 0 chr12 32442729 32442787 -111839702 + L2 LINE L2 3255 3312 -1 1555 157 96 56 chr12 32443241 32443616 -111838873 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr12 32444169 32444190 -111838299 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 32444248 32444276 -111838213 + AT_rich Low_complexity Low_complexity 1 28 0 2229 117 0 0 chr12 32444301 32444591 -111837898 - AluSx SINE Alu -22 290 1 243 324 108 7 chr12 32445769 32445908 -111836581 - MER5A DNA MER1_type -2 187 35 26 0 0 0 chr12 32448047 32448073 -111834416 + AT_rich Low_complexity Low_complexity 1 26 0 208 146 0 24 chr12 32448624 32448665 -111833824 + (CAA)n Simple_repeat Simple_repeat 3 42 0 225 0 0 0 chr12 32452175 32452200 -111830289 + (TTG)n Simple_repeat Simple_repeat 3 27 0 3922 134 34 0 chr12 32454466 32455083 -111827406 + Tigger3b DNA MER2_type 1 638 -593 2091 164 8 11 chr12 32455084 32455443 -111827046 + Tigger3b DNA MER2_type 874 1231 0 333 244 32 32 chr12 32456030 32456153 -111826336 - MIR SINE MIR -1 261 139 234 0 0 0 chr12 32456161 32456187 -111826302 + (CA)n Simple_repeat Simple_repeat 2 27 0 572 329 79 57 chr12 32458084 32458644 -111823845 + HAL1b LINE L1 21 592 -756 702 190 0 0 chr12 32458692 32458813 -111823676 - AluJb SINE Alu -17 295 175 2434 58 0 3 chr12 32459030 32459323 -111823166 - AluY SINE Alu -19 292 1 23 33 0 0 chr12 32459377 32459407 -111823082 + AT_rich Low_complexity Low_complexity 1 30 0 663 308 62 47 chr12 32460097 32460561 -111821928 + L1M4 LINE L1 2792 3262 -2884 691 115 8 41 chr12 32460562 32460684 -111821805 - MER4C LTR ERV1 -347 118 1 445 179 65 92 chr12 32460692 32460746 -111821743 + L1MC4 LINE L1 7864 7918 -124 345 47 0 0 chr12 32460746 32460789 -111821700 + (TG)n Simple_repeat Simple_repeat 2 44 0 445 179 65 92 chr12 32460789 32460918 -111821571 + L1MC4 LINE L1 7918 8042 0 210 143 0 0 chr12 32461264 32461299 -111821190 + (CA)n Simple_repeat Simple_repeat 2 36 0 1517 199 3 14 chr12 32461305 32461602 -111820887 - AluSx SINE Alu -18 294 1 225 228 177 44 chr12 32461822 32461980 -111820509 + L1ME4a LINE L1 5882 6060 -61 2098 32 0 0 chr12 32463361 32463610 -111818879 - L1PA3 LINE L1 -1 6154 5906 306 215 0 0 chr12 32463760 32463839 -111818650 + (TA)n Simple_repeat Simple_repeat 2 80 0 504 261 139 28 chr12 32464252 32464432 -111818057 + MIR SINE MIR 31 230 -32 253 243 57 113 chr12 32464430 32464607 -111817882 - MIR SINE MIR -83 179 13 * 2563 138 162 22 chr12 32464625 32465088 -111817401 + MER1A DNA MER1_type 1 528 -1 21 71 0 0 chr12 32466242 32466284 -111816205 + AT_rich Low_complexity Low_complexity 1 42 0 2304 84 3 26 chr12 32467239 32467549 -111814940 - AluSx SINE Alu -9 303 1 219 191 0 0 chr12 32467555 32467597 -111814892 - L2 LINE L2 -1 3312 3271 3772 106 9 110 chr12 32468173 32468626 -111813863 + MER4A LTR ERV1 1 353 -311 2162 133 0 0 chr12 32468626 32468934 -111813555 - AluSx SINE Alu -4 308 1 3772 106 9 110 chr12 32468934 32469218 -111813271 + MER4A LTR ERV1 353 664 0 21 71 0 0 chr12 32469371 32469413 -111813076 + AT_rich Low_complexity Low_complexity 1 42 0 556 275 78 6 chr12 32469448 32469615 -111812874 - MIR SINE MIR -61 201 23 234 293 54 81 chr12 32470450 32470747 -111811742 + L1MC/D LINE L1 5357 5645 -2163 1636 168 41 0 chr12 32470797 32471088 -111811401 - AluJo SINE Alu -9 303 1 22 0 0 0 chr12 32472321 32472343 -111810146 + AT_rich Low_complexity Low_complexity 1 22 0 231 274 137 21 chr12 32472784 32472879 -111809610 - MIR SINE MIR -96 112 7 542 354 6 11 chr12 32474154 32474335 -111808154 + MIR SINE MIR 5 184 -78 1951 117 3 14 chr12 32474375 32474696 -111807793 - AluSq SINE Alu 0 318 1 24 32 0 0 chr12 32474737 32474768 -111807721 + AT_rich Low_complexity Low_complexity 1 31 0 243 285 78 53 chr12 32474935 32475216 -111807273 + L1ME LINE L1 5523 5810 -311 2254 111 0 0 chr12 32475863 32476169 -111806320 - AluSg SINE Alu -4 306 1 882 199 20 34 chr12 32476874 32476925 -111805564 - L1MA6 LINE L1 0 6300 6250 2061 140 0 7 chr12 32476925 32477225 -111805264 + AluSx SINE Alu 1 298 -14 882 199 20 34 chr12 32477225 32477253 -111805236 - L1MA6 LINE L1 -50 6250 6223 228 35 0 0 chr12 32477253 32477282 -111805207 + (CA)n Simple_repeat Simple_repeat 2 30 0 882 199 20 34 chr12 32477282 32477466 -111805023 - L1MA6 LINE L1 -77 6223 6053 467 296 37 26 chr12 32479399 32479588 -111802901 + LTR67 LTR ERVL 29 219 -338 338 174 116 174 chr12 32480257 32480429 -111802060 + MER105 DNA DNA 2 163 -41 42632 34 23 1 chr12 32480653 32486673 -111795816 + L1PA3 LINE L1 2 6155 0 21 0 0 0 chr12 32486673 32486694 -111795795 + AT_rich Low_complexity Low_complexity 1 21 0 694 323 39 0 chr12 32486779 32487008 -111795481 + MIR SINE MIR 23 260 -2 2204 160 71 13 chr12 32487039 32487375 -111795114 + MSTA LTR MaLR 1 365 -63 2240 121 0 3 chr12 32487375 32487682 -111794807 - AluSq SINE Alu -7 306 1 2204 160 71 13 chr12 32487682 32487738 -111794751 + MSTA LTR MaLR 365 416 -12 244 308 48 29 chr12 32487763 32487867 -111794622 + L2 LINE L2 3171 3276 -37 64 106 0 0 chr12 32488583 32488829 -111793660 + AT_rich Low_complexity Low_complexity 1 246 0 281 307 34 45 chr12 32489513 32489692 -111792797 + MIR SINE MIR 86 262 0 218 203 31 47 chr12 32492091 32492155 -111790334 - MIR SINE MIR -126 136 74 355 361 22 46 chr12 32492444 32492812 -111789677 - L2 LINE L2 -341 2973 2615 302 306 32 81 chr12 32492817 32493065 -111789424 + HAL1 LINE L1 151 386 -2121 2233 53 0 11 chr12 32493065 32493348 -111789141 + AluY SINE Alu 22 301 -10 205 200 0 0 chr12 32494004 32494044 -111788445 + (TA)n Simple_repeat Simple_repeat 2 41 0 2452 73 0 10 chr12 32494115 32494429 -111788060 - AluY SINE Alu 0 311 1 325 258 0 0 chr12 32494442 32494508 -111787981 - MER5A DNA MER1_type -123 66 1 213 328 0 0 chr12 32494651 32494709 -111787780 + L2 LINE L2 3215 3272 0 209 271 188 33 chr12 32494812 32494993 -111787496 - MIR SINE MIR -6 256 48 191 375 68 52 chr12 32496627 32497027 -111785462 + L2 LINE L2 2145 2550 -764 5717 21 0 0 chr12 32497822 32498433 -111784056 - SVA Other Other -1 1385 775 242 214 29 43 chr12 32498650 32498720 -111783769 - MER92C LTR ERV1 -209 345 277 189 0 0 0 chr12 32498924 32498945 -111783544 + (TAAAAA)n Simple_repeat Simple_repeat 1 21 0 265 138 52 0 chr12 32498973 32499031 -111783458 + L1MB2 LINE L1 6111 6171 0 341 244 71 54 chr12 32499079 32499247 -111783242 + L1M4 LINE L1 3029 3199 -2947 22 56 0 0 chr12 32499794 32499830 -111782659 + AT_rich Low_complexity Low_complexity 1 36 0 211 146 167 0 chr12 32500043 32500091 -111782398 + MER5A DNA MER1_type 134 189 0 211 311 0 0 chr12 32500146 32500191 -111782298 + L2 LINE L2 3013 3057 -256 472 244 26 0 chr12 32500249 32500364 -111782125 - MER58 DNA MER1_type -97 118 1 205 245 53 43 chr12 32500398 32500492 -111781997 + L2 LINE L2 3125 3219 -94 423 225 23 31 chr12 32500538 32500667 -111781822 + MER94 DNA DNA 7 134 0 206 225 0 0 chr12 32500724 32500764 -111781725 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 300 283 162 6 chr12 32501260 32501433 -111781056 - L1ME4a LINE L1 -20 6101 5902 1967 156 3 10 chr12 32501596 32502036 -111780453 - AluJb SINE Alu 0 438 1 2117 91 14 10 chr12 32502364 32502660 -111779829 + AluSq SINE Alu 1 297 -16 281 68 23 0 chr12 32502660 32502704 -111779785 + (GGGA)n Simple_repeat Simple_repeat 1 45 0 24 0 0 0 chr12 32503463 32503487 -111779002 + AT_rich Low_complexity Low_complexity 1 24 0 297 319 14 0 chr12 32503690 32503759 -111778730 + MIR SINE MIR 10 79 -183 226 253 0 60 chr12 32503802 32503885 -111778604 + MIR SINE MIR 183 260 -2 1234 88 6 6 chr12 32504292 32504452 -111778037 - L1PA15 LINE L1 -9 6156 5997 215 344 48 8 chr12 32504602 32504727 -111777762 + L2 LINE L2 3180 3309 -4 2018 111 11 0 chr12 32504808 32505087 -111777402 + AluSx SINE Alu 5 286 -26 642 228 70 35 chr12 32505133 32505304 -111777185 + MIR SINE MIR 86 262 0 217 238 0 0 chr12 32505426 32505468 -111777021 + (TG)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr12 32506461 32506483 -111776006 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr12 32506706 32506749 -111775740 + AT_rich Low_complexity Low_complexity 1 43 0 7458 58 1 0 chr12 32506818 32508240 -111774249 - L1PA7 LINE L1 -4 6150 4726 * 7985 60 19 2 chr12 32508237 32509956 -111772533 + L1PA5 LINE L1 4416 6147 -7 300 305 86 33 chr12 32510011 32510221 -111772268 - L1MEd LINE L1 -5066 1053 833 770 147 175 34 chr12 32511159 32511336 -111771153 + MER3 DNA MER1_type 7 208 -1 224 192 64 0 chr12 32511690 32511768 -111770721 + (TA)n Simple_repeat Simple_repeat 2 84 0 227 295 154 45 chr12 32511846 32512002 -111770487 + MIR SINE MIR 13 185 -77 23 0 0 0 chr12 32512305 32512328 -111770161 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 32513123 32513152 -111769337 + AT_rich Low_complexity Low_complexity 1 29 0 180 111 0 0 chr12 32516901 32516928 -111765561 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 3330 70 2 5 chr12 32516944 32517361 -111765128 - L1PA6 LINE L1 -1 6153 5738 227 306 0 35 chr12 32517762 32517868 -111764621 + MER5A DNA MER1_type 26 139 -50 21 36 0 0 chr12 32518489 32518517 -111763972 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr12 32519352 32519373 -111763116 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2198 99 0 23 chr12 32519375 32519677 -111762812 - AluSx SINE Alu -17 295 1 235 150 0 50 chr12 32523365 32523425 -111759064 + (TAAAAA)n Simple_repeat Simple_repeat 2 58 0 4784 146 62 50 chr12 32524138 32524453 -111758036 + MER4D LTR ERV1 1 311 -592 894 121 7 28 chr12 32524453 32524594 -111757895 - L1PA8 LINE L1 -7 6165 6028 4784 146 62 50 chr12 32524594 32525171 -111757318 + MER4D LTR ERV1 311 903 0 774 314 20 8 chr12 32525262 32525501 -111756988 + MIR SINE MIR 1 241 -21 266 273 85 55 chr12 32525731 32525896 -111756593 - MLT1L LTR MaLR -6 609 440 239 261 0 11 chr12 32526006 32526098 -111756391 + CT-rich Low_complexity Low_complexity 6 96 0 1175 308 23 21 chr12 32526203 32526631 -111755858 + LTR16A LTR ERVL 17 445 -5 313 282 159 49 chr12 32527006 32527169 -111755320 - MER5A DNA MER1_type 0 189 9 202 256 13 90 chr12 32527216 32527294 -111755195 + MER5B DNA MER1_type 37 108 -70 * 287 308 0 0 chr12 32527271 32527336 -111755153 + MER5A DNA MER1_type 10 74 -115 444 37 0 0 chr12 32527336 32527390 -111755099 - L1PA4 LINE L1 -356 5799 5746 3173 31 3 0 chr12 32527390 32527741 -111754748 + L1PA4 LINE L1 5789 6143 -12 474 241 116 0 chr12 32527746 32527858 -111754631 + MER5A DNA MER1_type 65 189 0 3014 277 34 62 chr12 32528089 32529505 -111752984 + L2 LINE L2 1923 3289 -24 249 286 0 22 chr12 32530229 32530320 -111752169 + L1MC4 LINE L1 6615 6703 -1339 217 238 36 0 chr12 32530352 32530436 -111752053 + (TATATG)n Simple_repeat Simple_repeat 3 89 0 230 227 10 82 chr12 32530439 32530536 -111751953 - L1MC4 LINE L1 -1339 6703 6614 * 245 178 206 0 chr12 32530464 32530537 -111751952 + L1MC4 LINE L1 6615 6702 -1340 2518 50 0 10 chr12 32530947 32531248 -111751241 + AluY SINE Alu 1 298 -13 1587 172 8 0 chr12 32531706 32531968 -111750521 + AluJb SINE Alu 11 274 -38 825 87 0 0 chr12 32531968 32532083 -111750406 + (TTTC)n Simple_repeat Simple_repeat 4 118 0 252 0 0 0 chr12 32532084 32532112 -111750377 + (TA)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr12 32532111 32532138 -111750351 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 1833 207 74 94 chr12 32532273 32532838 -111749651 - MLT2B3 LTR ERVL 0 554 1 10946 190 19 20 chr12 32532838 32534834 -111747655 + L1PA13 LINE L1 348 2278 -4509 226 294 109 0 chr12 32535041 32535133 -111747356 + MIR SINE MIR 46 147 -115 311 100 0 0 chr12 32535815 32535855 -111746634 + L1PB1 LINE L1 6013 6052 -99 370 330 17 0 chr12 32535935 32536050 -111746439 + GA-rich Low_complexity Low_complexity 4 120 0 427 304 65 34 chr12 32537621 32537914 -111744575 + MLT1K LTR MaLR 158 459 -129 841 277 29 0 chr12 32538708 32538946 -111743543 - MIR SINE MIR -3 259 15 301 261 236 0 chr12 32539499 32539656 -111742833 + L2 LINE L2 2863 3056 -257 678 256 150 0 chr12 32539721 32539928 -111742561 + MIR SINE MIR 25 262 0 378 336 30 0 chr12 32539983 32540117 -111742372 + L2 LINE L2 3134 3271 -1 180 211 105 0 chr12 32541565 32541603 -111740886 + MIR SINE MIR 80 121 -141 196 325 214 0 chr12 32541841 32541967 -111740522 + MIR SINE MIR 102 254 -8 306 313 77 22 chr12 32545533 32545715 -111736774 + MIR SINE MIR 70 261 -1 2207 90 40 10 chr12 32545875 32546197 -111736292 - AluSp SINE Alu 0 313 1 231 340 57 14 chr12 32546503 32546644 -111735845 + MIR3 SINE MIR 1 147 -61 1722 157 39 20 chr12 32547689 32547995 -111734494 + AluJo SINE Alu 1 312 0 352 304 43 68 chr12 32548055 32548158 -111734331 - L1ME4a LINE L1 -244 5877 5773 2025 157 3 0 chr12 32548158 32548463 -111734026 + AluSg SINE Alu 1 306 -4 352 304 43 68 chr12 32548463 32548711 -111733778 - L1ME4a LINE L1 -348 5773 5535 984 181 6 0 chr12 32548775 32548946 -111733543 + FRAM SINE Alu 5 176 0 291 290 0 0 chr12 32548956 32549049 -111733440 - L1P5 LINE L1 -705 5451 5359 322 290 38 8 chr12 32549197 32549328 -111733161 + MIR SINE MIR 1 135 -127 1386 167 29 0 chr12 32550225 32550464 -111732025 + AluSx SINE Alu 49 294 -18 189 226 38 0 chr12 32550890 32550943 -111731546 + MIR SINE MIR 21 75 -133 314 285 106 26 chr12 32552318 32552471 -111730018 + MIR SINE MIR 4 170 -62 213 217 0 22 chr12 32552544 32552590 -111729899 + GA-rich Low_complexity Low_complexity 3 47 0 498 258 121 10 chr12 32554102 32554300 -111728189 + MIR SINE MIR 41 260 -2 360 314 76 31 chr12 32554241 32554464 -111728025 - MIR SINE MIR -14 248 16 * 415 288 120 5 chr12 32555020 32555211 -111727278 - MIR SINE MIR -49 213 1 236 213 0 0 chr12 32555223 32555270 -111727219 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 1986 103 68 4 chr12 32556030 32556311 -111726178 + AluSq SINE Alu 1 299 -14 286 294 24 12 chr12 32556382 32556467 -111726022 + LTR39 LTR ERV1 698 783 0 1528 165 24 0 chr12 32557336 32557584 -111724905 - AluJo SINE Alu -22 290 37 2463 70 3 0 chr12 32557669 32557971 -111724518 + AluSp SINE Alu 2 304 -9 379 303 8 8 chr12 32558646 32558778 -111723711 + MER70-int LTR ERVL 4535 4666 -357 316 280 18 110 chr12 32558877 32559159 -111723330 + LTR39-int LTR ERV1 7809 8064 -56 269 132 0 0 chr12 32559127 32559165 -111723324 + LTR39-int LTR ERV1 8312 8349 -50 * 4109 139 81 21 chr12 32559210 32559937 -111722552 + LTR39 LTR ERV1 1 771 -12 483 291 74 108 chr12 32559959 32560127 -111722362 - L2 LINE L2 -528 2786 2614 1880 171 0 3 chr12 32560127 32560419 -111722070 + AluJo SINE Alu 1 291 -21 483 291 74 108 chr12 32560419 32560928 -111721561 - L2 LINE L2 -700 2614 2132 1794 185 0 0 chr12 32561127 32561413 -111721076 + AluJo SINE Alu 1 286 -26 26 0 0 0 chr12 32561413 32561439 -111721050 + AT_rich Low_complexity Low_complexity 1 26 0 2192 105 0 0 chr12 32561442 32561728 -111720761 - AluSx SINE Alu -26 286 1 26 50 0 0 chr12 32561798 32561838 -111720651 + AT_rich Low_complexity Low_complexity 1 40 0 447 181 18 134 chr12 32562743 32562815 -111719674 - MER105 DNA DNA -20 184 142 2295 124 0 0 chr12 32562815 32563121 -111719368 + AluSx SINE Alu 1 306 -6 447 181 18 134 chr12 32563121 32563219 -111719270 - MER105 DNA DNA -62 142 34 2091 286 51 39 chr12 32563442 32564265 -111718224 - HERV16 LTR ERVL -3540 1456 624 2297 107 3 0 chr12 32565339 32565639 -111716850 + AluSg SINE Alu 1 301 -9 994 299 78 51 chr12 32566814 32567517 -111714972 - HERV16 LTR ERVL -4274 722 1 940 295 76 22 chr12 32567517 32567927 -111714562 - LTR16A LTR ERVL 0 450 19 2218 111 35 32 chr12 32568046 32568204 -111714285 - Tigger2 DNA MER2_type -75 2643 2487 2331 90 23 0 chr12 32568204 32568503 -111713986 + AluSx SINE Alu 2 307 -5 2218 111 35 32 chr12 32568503 32568714 -111713775 - Tigger2 DNA MER2_type -231 2487 2273 1262 173 14 0 chr12 32568723 32568937 -111713552 + AluJb SINE Alu 86 302 -10 400 127 0 0 chr12 32568938 32568993 -111713496 - Tigger2 DNA MER2_type -2663 55 1 231 39 20 59 chr12 32569487 32569538 -111712951 + (TTTTTA)n Simple_repeat Simple_repeat 2 50 0 27 49 0 0 chr12 32570420 32570461 -111712028 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr12 32572315 32572341 -111710148 + AT_rich Low_complexity Low_complexity 1 26 0 1230 204 5 5 chr12 32572412 32572633 -111709856 + AluJb SINE Alu 36 256 -56 378 0 0 0 chr12 32572924 32572966 -111709523 + (CA)n Simple_repeat Simple_repeat 2 43 0 549 68 0 0 chr12 32573564 32573638 -111708851 + (TTCC)n Simple_repeat Simple_repeat 2 75 0 1171 84 11 6 chr12 32573649 32573827 -111708662 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1280 138 15 15 chr12 32573836 32574031 -111708458 - AluJb SINE Alu -32 280 86 995 207 6 0 chr12 32574294 32574468 -111708021 + FAM SINE Alu 1 175 0 236 317 58 63 chr12 32574699 32574961 -111707528 + L1ME4a LINE L1 5266 5527 -594 1533 149 126 0 chr12 32574961 32575222 -111707267 - AluJo SINE Alu -2 310 17 236 317 58 63 chr12 32575222 32575322 -111707167 + L1ME4a LINE L1 5527 5626 -495 1437 223 149 34 chr12 32575330 32575767 -111706722 - MLT1F1 LTR MaLR 0 567 71 486 276 53 0 chr12 32575863 32576015 -111706474 + L1ME4a LINE L1 5636 5795 -326 366 303 45 0 chr12 32576070 32576248 -111706241 + L1ME4a LINE L1 5934 6119 -2 1849 164 3 3 chr12 32576462 32576754 -111705735 + AluSx SINE Alu 5 296 -16 2079 98 33 0 chr12 32577500 32577802 -111704687 - AluSq SINE Alu 0 311 1 461 241 3 22 chr12 32578224 32578364 -111704125 + MLT1H LTR MaLR 1 159 -390 850 148 65 24 chr12 32578518 32578687 -111703802 - FRAM SINE Alu 0 40 1 336 197 14 0 chr12 32578912 32578983 -111703506 + L2 LINE L2 3242 3313 0 878 200 47 6 chr12 32579047 32579217 -111703272 + MLT2C1 LTR ERVL 1 177 -220 1746 194 0 0 chr12 32579265 32579553 -111702936 + AluJo SINE Alu 1 288 -24 448 259 95 55 chr12 32579565 32579912 -111702577 + L1MEc LINE L1 1949 2309 -4087 1027 189 52 48 chr12 32579925 32580135 -111702354 + Charlie1a DNA MER1_type 76 289 -2472 2178 127 0 0 chr12 32580135 32580434 -111702055 + AluSx SINE Alu 1 299 -13 1027 189 52 48 chr12 32580434 32580493 -111701996 + Charlie1a DNA MER1_type 289 346 -1109 2147 105 41 0 chr12 32580862 32581157 -111701332 + AluSp SINE Alu 1 307 -6 335 109 0 18 chr12 32581565 32581620 -111700869 + Alu SINE Alu 2 55 -253 1129 140 67 0 chr12 32581624 32581803 -111700686 + AluSg/x SINE Alu 106 296 -14 2084 120 0 23 chr12 32582451 32582751 -111699738 + AluJb SINE Alu 1 293 -19 21 36 0 0 chr12 32582971 32582999 -111699490 + AT_rich Low_complexity Low_complexity 1 28 0 189 231 58 0 chr12 32583142 32583194 -111699295 - MIR SINE MIR -10 252 198 768 296 79 30 chr12 32583227 32583695 -111698794 - LTR16B LTR ERVL 0 464 10 357 222 33 0 chr12 32583705 32583795 -111698694 - MIR SINE MIR -96 166 74 2498 88 0 0 chr12 32583845 32584152 -111698337 - AluSq SINE Alu -6 307 1 4466 154 36 63 chr12 32584447 32585284 -111697205 - L1MB7 LINE L1 -21 6163 5305 2178 107 7 0 chr12 32585284 32585587 -111696902 - AluSx SINE Alu 0 305 1 1934 142 7 20 chr12 32585587 32585889 -111696600 - AluSx SINE Alu -14 298 1 4466 154 36 63 chr12 32585889 32586050 -111696439 - L1MB7 LINE L1 -878 5306 5142 695 150 0 95 chr12 32586050 32586197 -111696292 - FLAM_C SINE Alu 0 133 1 4466 154 36 63 chr12 32586197 32586423 -111696066 - L1MB7 LINE L1 -1042 5142 4967 1905 151 0 33 chr12 32586497 32586802 -111695687 - AluJo SINE Alu -17 295 1 524 127 0 0 chr12 32587574 32587645 -111694844 + AluS SINE Alu 2 72 -241 2036 120 35 0 chr12 32588497 32588780 -111693709 + AluSx SINE Alu 1 293 -19 258 234 0 16 chr12 32588985 32589049 -111693440 - Charlie7 DNA MER1_type -2511 101 39 2106 88 51 0 chr12 32589844 32590118 -111692371 + AluSg SINE Alu 3 290 -20 664 190 0 0 chr12 32590279 32590395 -111692094 + FLAM_C SINE Alu 3 118 -25 180 0 0 0 chr12 32590400 32590420 -111692069 + (GAA)n Simple_repeat Simple_repeat 2 21 0 4920 28 0 0 chr12 32590755 32591326 -111691163 - L1P LINE L1 -1727 4419 3849 4975 40 0 0 chr12 32591326 32591908 -111690581 + L1PA4 LINE L1 5571 6152 -3 1543 122 78 11 chr12 32591931 32592201 -111690288 + L1PA16 LINE L1 5861 6148 -18 321 293 135 23 chr12 32592563 32592778 -111689711 - MIR SINE MIR -15 247 9 666 266 52 22 chr12 32593032 32593261 -111689228 + L1MC4a LINE L1 7190 7425 -383 1186 184 18 0 chr12 32593265 32593482 -111689007 + AluJo SINE Alu 87 307 -5 1005 242 144 35 chr12 32593488 32593968 -111688521 + L1MC4 LINE L1 7507 8038 -4 199 263 97 61 chr12 32594220 32594334 -111688155 - L2 LINE L2 -223 3049 2932 607 262 38 24 chr12 32594424 32594634 -111687855 + LTR33 LTR ERVL 307 519 -2 251 228 96 96 chr12 32594694 32594861 -111687628 - L2 LINE L2 -1211 2103 1937 2263 118 0 3 chr12 32594978 32595291 -111687198 + AluSx SINE Alu 1 312 0 2447 89 3 0 chr12 32595448 32595750 -111686739 + AluSq SINE Alu 1 303 -10 2007 139 3 13 chr12 32596684 32596987 -111685502 - AluSx SINE Alu -12 300 1 298 232 11 74 chr12 32597101 32597196 -111685293 + MLT1E LTR MaLR 8 96 -497 738 214 168 85 chr12 32597271 32597563 -111684926 + MLT1E LTR MaLR 283 594 -1 1725 77 23 0 chr12 32599989 32600209 -111682280 + AluSq SINE Alu 69 293 -20 28 0 0 0 chr12 32600799 32600827 -111681662 + AT_rich Low_complexity Low_complexity 1 28 0 2281 114 0 0 chr12 32600897 32601195 -111681294 + AluSx SINE Alu 1 298 -14 333 0 0 0 chr12 32601432 32601469 -111681020 + (CA)n Simple_repeat Simple_repeat 2 38 0 1506 260 110 68 chr12 32601653 32602682 -111679807 - L1ME LINE L1 -534 5630 4645 2151 113 0 0 chr12 32602682 32602964 -111679525 + AluSx SINE Alu 1 282 -30 1506 260 110 68 chr12 32602964 32602991 -111679498 - L1ME LINE L1 -1519 4645 4621 348 24 0 0 chr12 32602991 32603032 -111679457 + (CA)n Simple_repeat Simple_repeat 2 42 0 1506 260 110 68 chr12 32603032 32603270 -111679219 - L1ME LINE L1 -1543 4621 4394 2047 151 3 0 chr12 32603270 32603568 -111678921 + AluSx SINE Alu 1 299 -13 1506 260 110 68 chr12 32603568 32603956 -111678533 - L1ME LINE L1 -1770 4394 3865 2268 92 7 7 chr12 32603956 32604261 -111678228 + AluSq SINE Alu 1 305 -8 1506 260 110 68 chr12 32604261 32604362 -111678127 - L1ME LINE L1 -2299 3865 3770 700 285 7 0 chr12 32604485 32604657 -111677832 - FRAM SINE Alu 0 173 1 381 303 58 33 chr12 32604686 32604960 -111677529 - L1ME LINE L1 -2693 3453 3173 26 0 0 0 chr12 32605017 32605043 -111677446 + AT_rich Low_complexity Low_complexity 1 26 0 3650 187 81 52 chr12 32605543 32607022 -111675467 + L1MDa LINE L1 33 1783 -4757 1773 136 3 45 chr12 32607379 32607687 -111674802 - AluJo SINE Alu 0 312 18 1457 147 127 12 chr12 32607709 32607994 -111674495 - AluSg SINE Alu 0 310 1 2286 113 3 0 chr12 32608285 32608595 -111673894 - AluSp SINE Alu -2 311 1 302 269 92 31 chr12 32608891 32609021 -111673468 - MIR SINE MIR -105 157 20 2263 91 0 31 chr12 32609058 32609376 -111673113 + AluSx SINE Alu 1 308 -4 1911 167 10 3 chr12 32609795 32610101 -111672388 + AluSx SINE Alu 1 308 -4 246 259 62 12 chr12 32610225 32610306 -111672183 + MIR SINE MIR 65 149 -113 707 224 52 84 chr12 32610508 32610816 -111671673 + MER46C DNA MER2_type 2 299 -39 24 0 0 0 chr12 32611524 32611548 -111670941 + AT_rich Low_complexity Low_complexity 1 24 0 259 319 0 0 chr12 32611897 32611988 -111670501 - MIR SINE MIR -102 160 70 333 304 223 0 chr12 32612295 32612443 -111670046 - MIR SINE MIR -42 220 40 2165 125 0 7 chr12 32613164 32613461 -111669028 + AluSq SINE Alu 1 295 -18 811 149 0 0 chr12 32613480 32613594 -111668895 + FLAM_C SINE Alu 6 119 -24 37 39 0 0 chr12 32613594 32613645 -111668844 + AT_rich Low_complexity Low_complexity 1 51 0 2049 125 0 0 chr12 32613763 32614042 -111668447 - AluJb SINE Alu -33 279 1 1497 172 56 8 chr12 32614163 32614456 -111668033 + AluJb SINE Alu 1 306 0 1139 189 0 0 chr12 32614465 32614640 -111667849 + FAM SINE Alu 1 175 0 24 0 0 0 chr12 32614777 32614801 -111667688 + AT_rich Low_complexity Low_complexity 1 24 0 1321 161 5 22 chr12 32614813 32615036 -111667453 - AluJb SINE Alu -93 219 1 2419 85 0 7 chr12 32615044 32615349 -111667140 - AluSc SINE Alu -6 303 1 2391 78 0 0 chr12 32616897 32617192 -111665297 - AluY SINE Alu -16 295 1 1949 165 64 3 chr12 32617310 32617638 -111664851 - MER7A DNA MER2_type 0 346 1 593 134 35 0 chr12 32619824 32619966 -111662523 + L1MB7 LINE L1 6055 6177 -7 507 325 46 52 chr12 32620069 32620414 -111662075 - LTR59 LTR ERV1 -12 585 243 699 221 24 0 chr12 32621059 32621186 -111661303 - FLAM_C SINE Alu -12 131 2 471 202 43 0 chr12 32621293 32621387 -111661102 + U13 snRNA snRNA 1 98 -6 370 267 19 19 chr12 32621469 32621574 -111660915 - HERV9 LTR ERV1 -500 4454 4350 924 129 0 7 chr12 32621575 32621714 -111660775 + AluJb SINE Alu 163 300 -12 383 242 39 84 chr12 32622684 32622862 -111659627 - HERV9 LTR ERV1 -1779 2868 2699 2398 89 3 0 chr12 32623273 32623575 -111658914 - AluSx SINE Alu -9 303 1 250 209 45 15 chr12 32624559 32624626 -111657863 - HERV9 LTR ERV1 -3158 4598 4530 286 146 0 0 chr12 32624682 32624723 -111657766 + AluJb SINE Alu 1 41 -261 299 311 33 11 chr12 32624742 32624832 -111657657 - HERV9 LTR ERV1 -4161 2640 2549 1600 142 4 0 chr12 32624897 32625136 -111657353 + AluJb SINE Alu 48 287 -25 1716 145 41 4 chr12 32625547 32625816 -111656673 - AluSx SINE Alu -33 279 1 497 294 33 13 chr12 32626255 32626408 -111656081 - HERV9 LTR ERV1 -4147 500 345 2308 123 0 0 chr12 32626422 32626730 -111655759 + AluSx SINE Alu 1 308 -4 279 227 49 98 chr12 32626738 32626901 -111655588 - HERV9 LTR ERV1 -4949 3450 3296 2302 86 7 7 chr12 32627241 32627543 -111654946 - AluSp SINE Alu -11 302 1 1915 107 15 0 chr12 32628447 32628709 -111653780 - AluSg SINE Alu -10 300 35 343 255 0 2 chr12 32629413 32629501 -111652988 - L1MC4 LINE L1 -490 7318 7233 940 245 137 35 chr12 32629606 32629933 -111652556 - L1ME3A LINE L1 -110 6060 5768 210 37 0 0 chr12 32629933 32629960 -111652529 + (TG)n Simple_repeat Simple_repeat 2 28 0 940 245 137 35 chr12 32629960 32630604 -111651885 - L1ME3A LINE L1 -402 5768 5191 2292 69 7 14 chr12 32630604 32630893 -111651596 - AluSq SINE Alu -16 297 11 940 245 137 35 chr12 32630893 32631170 -111651319 - L1ME3A LINE L1 -979 5191 4595 2359 61 0 20 chr12 32631212 32631531 -111650958 - AluSq SINE Alu 0 313 1 2309 71 3 7 chr12 32631820 32632116 -111650373 + AluY SINE Alu 1 295 -16 351 310 139 31 chr12 32632632 32632969 -111649520 - LTR34 LTR ERV1 -64 584 228 2108 123 0 13 chr12 32633460 32633770 -111648719 + AluSq SINE Alu 1 306 -7 181 195 0 24 chr12 32635265 32635306 -111647183 - MIR SINE MIR -142 120 81 252 224 30 0 chr12 32636764 32636823 -111645666 + MIR SINE MIR 88 151 -111 2093 98 11 3 chr12 32636823 32637108 -111645381 + AluSq SINE Alu 1 287 -26 185 301 217 26 chr12 32637337 32637682 -111644807 + L2 LINE L2 2238 2648 -666 183 191 302 0 chr12 32639046 32639109 -111643380 + MIR SINE MIR 117 198 -64 197 254 90 30 chr12 32639136 32639203 -111643286 - MIR SINE MIR -87 175 105 27 87 0 0 chr12 32641738 32641807 -111640682 + GC_rich Low_complexity Low_complexity 1 69 0 22 35 0 0 chr12 32642183 32642212 -111640277 + GC_rich Low_complexity Low_complexity 1 29 0 1326 101 10 15 chr12 32645128 32645327 -111637162 + AluSg/x SINE Alu 112 309 -1 310 321 12 24 chr12 32645345 32645429 -111637060 + L2 LINE L2 3144 3226 -46 762 181 0 23 chr12 32645501 32645634 -111636855 + AluJo SINE Alu 1 130 -172 1735 108 24 138 chr12 32645637 32645978 -111636511 + AluYb8 SINE Alu 2 303 -5 197 33 33 0 chr12 32645978 32646008 -111636481 + (TA)n Simple_repeat Simple_repeat 1 31 0 778 261 0 7 chr12 32646013 32646166 -111636323 + AluJo SINE Alu 137 288 -14 2069 112 3 7 chr12 32646176 32646482 -111636007 + AluSp SINE Alu 1 305 0 29 0 0 0 chr12 32646482 32646511 -111635978 + AT_rich Low_complexity Low_complexity 1 29 0 2384 103 0 3 chr12 32646846 32647156 -111635333 + AluSg SINE Alu 1 309 -1 2424 84 0 7 chr12 32647299 32647595 -111634894 + AluSg SINE Alu 1 294 -16 26 30 0 0 chr12 32647800 32647833 -111634656 + AT_rich Low_complexity Low_complexity 1 33 0 2220 92 3 3 chr12 32648166 32648482 -111634007 - AluSp SINE Alu 0 316 1 206 240 20 0 chr12 32648611 32648661 -111633828 - L2 LINE L2 -1 3271 3221 2191 92 0 24 chr12 32649348 32649677 -111632812 - AluSq SINE Alu 0 322 1 308 293 162 20 chr12 32649725 32649923 -111632566 + L3 LINE CR1 1099 1324 -253 194 167 0 0 chr12 32650298 32650334 -111632155 - L2 LINE L2 -254 3059 3024 939 207 6 0 chr12 32650714 32650949 -111631540 + FRAM SINE Alu 1 236 0 1943 153 0 10 chr12 32651162 32651456 -111631033 - AluSx SINE Alu -21 291 1 293 304 223 0 chr12 32652177 32652325 -111630164 + MIR SINE MIR 40 220 -42 235 319 0 0 chr12 32652632 32652723 -111629766 + MIR SINE MIR 70 160 -102 24 0 0 0 chr12 32653072 32653096 -111629393 + AT_rich Low_complexity Low_complexity 1 24 0 690 224 52 84 chr12 32653804 32654112 -111628377 - MER46C DNA MER2_type -39 299 2 221 259 62 12 chr12 32654314 32654395 -111628094 - MIR SINE MIR -113 149 65 1921 163 10 3 chr12 32654519 32654825 -111627664 - AluJb SINE Alu -4 308 1 2284 91 0 31 chr12 32655244 32655562 -111626927 - AluSx SINE Alu -4 308 1 261 269 92 31 chr12 32655599 32655729 -111626760 + MIR SINE MIR 20 157 -105 2302 113 3 0 chr12 32656025 32656335 -111626154 + AluSp SINE Alu 1 311 -2 1471 147 127 12 chr12 32656626 32656911 -111625578 + AluSg SINE Alu 1 310 0 1787 136 3 45 chr12 32656932 32657240 -111625249 + AluJo SINE Alu 18 312 0 2600 175 88 31 chr12 32657597 32658311 -111624178 - L1MDa LINE L1 -4757 1783 1029 1517 172 56 8 chr12 32658535 32658828 -111623661 + AluJb SINE Alu 1 306 0 1074 189 0 0 chr12 32658837 32659012 -111623477 + FAM SINE Alu 1 175 0 1051 190 9 32 chr12 32659190 32659406 -111623083 - AluJb SINE Alu -101 211 1 2352 95 0 7 chr12 32659414 32659719 -111622770 - AluSc SINE Alu -6 303 1 1176 144 0 0 chr12 32660372 32660545 -111621944 + AluSg/x SINE Alu 139 311 -1 2079 137 7 0 chr12 32660552 32660845 -111621644 + AluSx SINE Alu 1 295 -17 2253 126 0 0 chr12 32660848 32661158 -111621331 + AluSx SINE Alu 1 310 -2 1085 90 0 0 chr12 32661251 32661384 -111621105 + AluSg SINE Alu 2 134 -176 2098 85 7 41 chr12 32661385 32661526 -111620963 + AluSg SINE Alu 1 128 -182 2378 67 0 41 chr12 32661526 32661842 -111620647 + AluY SINE Alu 1 303 -8 2098 85 7 41 chr12 32661842 32661993 -111620496 + AluSg SINE Alu 128 283 -27 2283 101 0 0 chr12 32662331 32662628 -111619861 - AluSx SINE Alu -14 298 2 378 304 30 0 chr12 32662712 32662847 -111619642 - MIR SINE MIR -56 206 68 2225 108 6 19 chr12 32664419 32664734 -111617755 + AluSx SINE Alu 1 311 -1 2242 95 7 3 chr12 32666713 32667009 -111615480 + AluSx SINE Alu 1 297 -15 1602 92 60 0 chr12 32667526 32667743 -111614746 + AluSq SINE Alu 67 296 -17 277 140 60 0 chr12 32667861 32667911 -111614578 + Alu SINE Alu 241 293 -9 938 207 6 0 chr12 32668123 32668358 -111614131 - FRAM SINE Alu 0 236 1 194 167 0 0 chr12 32668738 32668774 -111613715 + L2 LINE L2 3024 3059 -254 319 278 150 22 chr12 32669167 32669347 -111613142 - L3 LINE CR1 -276 1301 1099 2192 92 0 24 chr12 32669395 32669724 -111612765 + AluSq SINE Alu 1 322 0 206 240 20 0 chr12 32670412 32670462 -111612027 + L2 LINE L2 3221 3271 -1 224 335 149 21 chr12 32670579 32670591 -111611898 - MIR SINE MIR 0 262 253 2322 96 3 3 chr12 32670591 32670894 -111611595 + AluSp SINE Alu 1 303 -10 224 335 149 21 chr12 32670894 32671069 -111611420 - MIR SINE MIR -9 253 51 200 180 60 0 chr12 32671933 32671983 -111610506 + (CGTG)n Simple_repeat Simple_repeat 4 56 0 1533 260 72 32 chr12 32672395 32672928 -111609561 - MLT1F1 LTR MaLR -1 566 1 2180 105 0 40 chr12 32673208 32673533 -111608956 + AluSx SINE Alu 1 312 0 350 177 63 13 chr12 32673729 32673808 -111608681 + L2 LINE L2 3184 3266 -47 316 256 126 63 chr12 32673825 32674032 -111608457 - L2 LINE L2 -850 2464 2245 2381 93 0 0 chr12 32674383 32674684 -111607805 - AluSg SINE Alu -9 301 1 25 0 0 0 chr12 32674684 32674709 -111607780 + AT_rich Low_complexity Low_complexity 1 25 0 2284 87 14 0 chr12 32674904 32675193 -111607296 + AluSg SINE Alu 1 293 -17 2059 141 3 7 chr12 32675207 32675513 -111606976 + AluSx SINE Alu 1 305 -7 246 207 35 17 chr12 32675588 32675646 -111606843 - L2 LINE L2 -880 2434 2376 2119 102 7 3 chr12 32675646 32675952 -111606537 + AluSq SINE Alu 1 307 0 181 180 40 0 chr12 32676088 32676138 -111606351 + (TA)n Simple_repeat Simple_repeat 2 53 0 1593 170 13 26 chr12 32676191 32676503 -111605986 - AluJb SINE Alu -4 308 1 486 89 196 0 chr12 32676510 32676678 -111605811 - AluSp SINE Alu -16 297 97 2190 108 0 3 chr12 32676963 32677251 -111605238 + AluSx SINE Alu 21 307 -5 1351 174 5 0 chr12 32677293 32677511 -111604978 + AluJo SINE Alu 84 302 -10 277 201 188 56 chr12 32677511 32677548 -111604941 - MLT1A1 LTR MaLR -32 333 302 2180 109 3 0 chr12 32677548 32677855 -111604634 + AluSq SINE Alu 1 308 0 277 201 188 56 chr12 32677855 32677959 -111604530 - MLT1A1 LTR MaLR -63 302 171 292 196 107 62 chr12 32678414 32678425 -111604064 + L1M4 LINE L1 2461 2470 -3676 2251 88 0 0 chr12 32678425 32678719 -111603770 + AluY SINE Alu 1 294 -17 292 196 107 62 chr12 32678719 32678819 -111603670 + L1M4 LINE L1 2470 2577 -3569 2332 101 3 0 chr12 32678828 32679126 -111603363 + AluSg SINE Alu 1 299 -11 300 185 0 0 chr12 32679135 32679189 -111603300 + L1M4 LINE L1 2667 2720 -3426 1777 135 13 51 chr12 32679195 32679506 -111602983 + AluSx SINE Alu 1 299 -13 1761 95 52 75 chr12 32679889 32680194 -111602295 + AluSx SINE Alu 1 298 -14 2086 93 7 11 chr12 32681115 32681384 -111601105 + AluSx SINE Alu 38 305 -7 257 217 67 0 chr12 32681614 32681674 -111600815 + MER116 DNA Mariner 1 64 -16 2399 54 7 0 chr12 32681676 32681989 -111600500 + AluSp SINE Alu 1 315 0 753 160 7 35 chr12 32682072 32682216 -111600273 - FLAM_C SINE Alu 0 143 4 302 256 17 43 chr12 32682364 32682481 -111600008 + L2 LINE L2 2183 2296 -1018 1893 162 0 3 chr12 32682593 32682889 -111599600 - AluJb SINE Alu -17 295 1 450 193 37 176 chr12 32682890 32683001 -111599488 + LTR41 LTR ERVL 506 631 -164 2199 105 0 19 chr12 32683001 32683316 -111599173 - AluSc SINE Alu 0 309 1 450 193 37 176 chr12 32683316 32683429 -111599060 + LTR41 LTR ERVL 631 758 -37 1807 172 45 55 chr12 32683429 32683536 -111598953 + MLT2D LTR ERVL 1 108 -306 2125 104 0 0 chr12 32683536 32683815 -111598674 - AluSg SINE Alu -9 301 23 1807 172 45 55 chr12 32683815 32684125 -111598364 + MLT2D LTR ERVL 108 414 0 2320 85 7 0 chr12 32684131 32684425 -111598064 - AluSg SINE Alu -14 296 1 450 193 37 176 chr12 32684425 32684505 -111597984 + LTR41 LTR ERVL 763 795 0 361 237 8 92 chr12 32684512 32684643 -111597846 + L2 LINE L2 2260 2379 -935 2224 119 0 6 chr12 32684644 32684956 -111597533 - AluSx SINE Alu 0 312 3 882 111 95 265 chr12 32685110 32685469 -111597020 + AluJo SINE Alu 2 299 -3 2576 65 0 3 chr12 32685469 32685776 -111596713 + AluY SINE Alu 1 306 -5 514 78 0 0 chr12 32685968 32686032 -111596457 - AluJ SINE Alu -144 168 105 2038 111 9 49 chr12 32686664 32686988 -111595501 - AluJb SINE Alu -1 311 1 728 145 8 8 chr12 32687215 32687332 -111595157 - AluJ SINE Alu -194 118 2 453 152 0 0 chr12 32687332 32687398 -111595091 + MLT1C LTR MaLR 402 467 0 1053 126 46 23 chr12 32687683 32687858 -111594631 + AluSp SINE Alu 122 300 -13 2413 106 3 0 chr12 32688086 32688398 -111594091 + AluSq SINE Alu 1 313 0 1734 186 0 31 chr12 32688513 32688831 -111593658 - AluJb SINE Alu -4 308 1 2055 158 0 0 chr12 32688840 32689138 -111593351 - AluSx SINE Alu -14 298 1 1920 148 3 13 chr12 32689441 32689739 -111592750 - AluSg SINE Alu -15 295 1 666 185 0 8 chr12 32689900 32690019 -111592470 + FLAM_C SINE Alu 1 118 -25 2294 104 3 0 chr12 32690216 32690515 -111591974 + AluSg1 SINE Alu 1 300 -9 234 308 92 21 chr12 32691081 32691237 -111591252 + MER5A DNA MER1_type 8 184 -5 2025 153 0 0 chr12 32691306 32691600 -111590889 + AluJb SINE Alu 5 298 -14 2236 80 6 22 chr12 32691601 32691915 -111590574 + AluY SINE Alu 1 309 -2 1991 97 4 0 chr12 32692124 32692381 -111590108 + AluSq SINE Alu 1 258 -55 290 297 232 14 chr12 32692564 32692840 -111589649 - L2 LINE L2 -688 2626 2291 1873 169 3 0 chr12 32692933 32693229 -111589260 + AluJb SINE Alu 1 297 -15 910 184 81 135 chr12 32693782 32694130 -111588359 - LTR34 LTR ERV1 -370 329 1 428 221 0 1 chr12 32694162 32694246 -111588243 - L1MC/D LINE L1 -599 5567 5486 2127 98 0 54 chr12 32694246 32694563 -111587926 - AluSc SINE Alu -9 300 1 379 319 36 0 chr12 32694593 32694731 -111587758 + PRIMA41-int LTR ERV1 6321 6463 -1293 2291 94 3 0 chr12 32695340 32695627 -111586862 + AluSx SINE Alu 1 288 -24 1079 99 81 0 chr12 32697292 32697453 -111585036 - AluSp SINE Alu -12 301 128 28 29 0 0 chr12 32697552 32697587 -111584902 + GC_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr12 32697707 32697742 -111584747 + GC_rich Low_complexity Low_complexity 1 35 0 28 79 0 0 chr12 32697805 32697868 -111584621 + GC_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr12 32697941 32697965 -111584524 + GC_rich Low_complexity Low_complexity 1 24 0 545 272 47 27 chr12 32698329 32698513 -111583976 - MLT1K LTR MaLR -366 222 57 2280 105 0 0 chr12 32698610 32698904 -111583585 + AluSx SINE Alu 1 294 -18 2205 130 55 0 chr12 32699005 32699350 -111583139 - THE1B LTR MaLR 0 364 1 248 208 0 56 chr12 32699613 32699685 -111582804 + MIR3 SINE MIR 133 200 -8 2373 89 3 0 chr12 32700024 32700328 -111582161 + AluSq SINE Alu 6 310 -3 2230 94 3 29 chr12 32700835 32701144 -111581345 - AluSq SINE Alu -12 301 1 453 123 0 0 chr12 32701403 32701468 -111581021 + MER92B LTR ERV1 1 65 -571 2040 52 0 12 chr12 32701471 32701719 -111580770 + AluY SINE Alu 57 301 -10 2234 131 0 3 chr12 32701730 32702043 -111580446 + AluSx SINE Alu 1 312 0 206 204 0 19 chr12 32702043 32702097 -111580392 + GA-rich Low_complexity Low_complexity 4 56 0 2157 97 7 0 chr12 32702262 32702541 -111579948 + AluSx SINE Alu 1 281 -31 417 39 0 0 chr12 32702541 32702592 -111579897 + (CCAA)n Simple_repeat Simple_repeat 1 51 0 1678 152 65 7 chr12 32703020 32703187 -111579302 - AluJb SINE Alu -10 302 111 338 0 24 0 chr12 32703187 32703229 -111579260 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1678 152 65 7 chr12 32703229 32703337 -111579152 - AluJb SINE Alu -201 111 11 2237 100 3 7 chr12 32703343 32703643 -111578846 - AluSg SINE Alu -9 301 3 788 164 7 14 chr12 32703754 32703894 -111578595 + FLAM_C SINE Alu 1 139 -4 485 223 7 4 chr12 32704014 32704142 -111578347 + MSTC LTR MaLR 220 379 -48 2099 102 7 14 chr12 32704147 32704430 -111578059 + AluSx SINE Alu 1 281 -31 1042 174 30 52 chr12 32704470 32704700 -111577789 + AluJb SINE Alu 85 309 -3 192 125 0 0 chr12 32704710 32704742 -111577747 + (GGAAA)n Simple_repeat Simple_repeat 3 34 0 1653 163 52 28 chr12 32704842 32705131 -111577358 - AluJb SINE Alu -16 296 1 2267 99 0 10 chr12 32705335 32705639 -111576850 - AluSx SINE Alu -11 301 1 1560 160 4 0 chr12 32705653 32705916 -111576573 + L1MA6 LINE L1 6037 6300 0 434 132 44 0 chr12 32705940 32706008 -111576481 + MLT1A2 LTR MaLR 1 71 -303 2239 114 3 0 chr12 32706011 32706309 -111576180 - AluSq SINE Alu -14 299 1 2403 90 40 3 chr12 32706309 32706655 -111575834 - L1PA11 LINE L1 -2 6172 5814 780 169 0 0 chr12 32706655 32706785 -111575704 - FRAM SINE Alu -9 167 38 2302 97 13 3 chr12 32707144 32707453 -111575036 + AluSx SINE Alu 1 312 0 1197 249 61 32 chr12 32707659 32708069 -111574420 - MER90 LTR ERV1 -87 527 106 527 267 35 53 chr12 32708070 32708355 -111574134 - MER34B LTR ERV1 0 565 286 2955 93 42 9 chr12 32708355 32708739 -111573750 + MLT2A1 LTR ERVL 1 402 -42 672 99 0 0 chr12 32708739 32708850 -111573639 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 2955 93 42 9 chr12 32708850 32708895 -111573594 + MLT2A1 LTR ERVL 402 444 0 355 228 105 18 chr12 32708990 32709104 -111573385 - MER34B LTR ERV1 -441 124 1 751 293 35 4 chr12 32709244 32709476 -111573013 + MIR SINE MIR 6 244 -18 2018 209 87 27 chr12 32709654 32710204 -111572285 - MER92B LTR ERV1 0 636 54 2161 125 6 10 chr12 32710204 32710550 -111571939 - AluSx SINE Alu 0 345 1 1154 180 5 14 chr12 32711043 32711254 -111571235 + AluJb SINE Alu 77 285 -27 810 129 0 43 chr12 32711253 32711393 -111571096 - AluJo SINE Alu -178 134 1 * 1012 155 13 0 chr12 32711397 32711552 -111570937 - FRAM SINE Alu -20 156 1 1633 167 53 11 chr12 32711606 32711888 -111570601 - AluJb SINE Alu -18 294 1 842 175 136 6 chr12 32712172 32712349 -111570140 + MLT1D LTR MaLR 306 505 0 25 0 0 0 chr12 32712832 32712857 -111569632 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr12 32712950 32712970 -111569519 + (TG)n Simple_repeat Simple_repeat 1 20 0 1971 147 3 0 chr12 32712994 32713280 -111569209 - AluSq SINE Alu -26 287 1 2163 95 50 0 chr12 32714166 32714449 -111568040 - AluSq SINE Alu -16 297 1 400 216 95 60 chr12 32715186 32715302 -111567187 + MIR SINE MIR 35 154 -108 1885 164 7 3 chr12 32715327 32715619 -111566870 + AluSx SINE Alu 1 293 -19 1809 138 6 58 chr12 32715619 32715931 -111566558 + AluJb SINE Alu 5 300 -12 255 208 0 0 chr12 32716055 32716103 -111566386 - AluSc SINE Alu -3 296 249 477 239 61 6 chr12 32716109 32716272 -111566217 + AluSq SINE Alu 95 266 -47 628 339 111 36 chr12 32716482 32716707 -111565782 - L2 LINE L2 -31 3282 3075 1866 159 21 7 chr12 32716707 32716996 -111565493 - AluJb SINE Alu -19 293 1 628 339 111 36 chr12 32716996 32717602 -111564887 - L2 LINE L2 -238 3075 2403 1978 110 24 14 chr12 32717646 32717985 -111564504 + AluSx SINE Alu 1 312 0 1862 152 7 7 chr12 32717997 32718293 -111564196 + AluJb SINE Alu 1 296 -16 1404 91 0 122 chr12 32718363 32718414 -111564075 + AluSg/x SINE Alu 85 141 -169 2268 120 0 0 chr12 32718414 32718715 -111563774 + AluSx SINE Alu 1 301 -11 1404 91 0 122 chr12 32718715 32718917 -111563572 + AluSg/x SINE Alu 141 307 -3 805 148 78 0 chr12 32718920 32719062 -111563427 + FRAM SINE Alu 1 153 -23 298 285 121 14 chr12 32719143 32719350 -111563139 - L2 LINE L2 -1340 1974 1746 2259 85 44 0 chr12 32719617 32719910 -111562579 - AluSx SINE Alu -6 306 1 2417 95 0 0 chr12 32719960 32720265 -111562224 - AluY SINE Alu -6 305 1 239 252 122 84 chr12 32720805 32720835 -111561654 + MER91C DNA MER1_type 4 31 -109 2483 76 3 0 chr12 32720835 32721136 -111561353 - AluSg SINE Alu -8 302 1 239 252 122 84 chr12 32721136 32721236 -111561253 + MER91C DNA MER1_type 31 139 -1 1439 121 10 0 chr12 32721551 32721750 -111560739 - AluSq SINE Alu -17 296 96 2439 85 3 0 chr12 32723799 32724105 -111558384 - AluSq SINE Alu -6 307 1 241 125 172 0 chr12 32724263 32724327 -111558162 - L1ME4a LINE L1 0 6121 6047 2241 119 0 3 chr12 32724532 32724843 -111557646 - AluSq SINE Alu -3 310 1 1972 145 13 0 chr12 32724901 32725205 -111557284 + AluSg SINE Alu 1 308 -2 2376 55 13 7 chr12 32725545 32725854 -111556635 + AluY SINE Alu 1 311 0 377 181 103 35 chr12 32725924 32726040 -111556449 - MIR SINE MIR -42 220 97 690 193 22 30 chr12 32726636 32726771 -111555718 + MER94 DNA DNA 1 134 0 182 245 0 20 chr12 32726790 32726839 -111555650 + MIR SINE MIR 87 134 -74 975 172 11 17 chr12 32726839 32727019 -111555470 - FRAM SINE Alu -2 174 1 2265 112 0 0 chr12 32727027 32727321 -111555168 - AluSx SINE Alu -18 294 1 1342 175 29 71 chr12 32727324 32727633 -111554856 - AluJb SINE Alu -16 296 1 2434 72 7 3 chr12 32728755 32729059 -111553430 - AluSp SINE Alu -8 305 1 382 314 22 7 chr12 32729136 32729273 -111553216 - MIR SINE MIR -113 149 11 2109 149 36 0 chr12 32729334 32729669 -111552820 - L1PA16 LINE L1 -23 6143 5797 485 272 88 41 chr12 32730040 32730460 -111552029 - L1PA16 LINE L1 -438 5725 5255 1995 155 20 0 chr12 32731236 32731539 -111550950 + AluJb SINE Alu 1 309 -3 709 62 134 0 chr12 32731632 32731729 -111550760 + MER83 LTR ERV1 1 110 -338 * 1958 127 66 91 chr12 32731728 32732051 -111550438 + MER83 LTR ERV1 50 362 -86 2631 59 0 0 chr12 32732051 32732357 -111550132 + AluY SINE Alu 1 306 -5 1958 127 66 91 chr12 32732357 32732442 -111550047 + MER83 LTR ERV1 362 448 0 220 229 0 0 chr12 32733190 32733238 -111549251 + A-rich Low_complexity Low_complexity 4 51 0 317 203 0 16 chr12 32733274 32733338 -111549151 - MER112 DNA MER1_type -189 71 9 4619 56 40 20 chr12 32733830 32734843 -111547646 + MER11A LTR ERVK 1 1266 0 1961 151 10 7 chr12 32734916 32735214 -111547275 + AluJb SINE Alu 1 299 -13 2108 123 0 33 chr12 32735557 32735857 -111546632 + AluJb SINE Alu 1 290 -22 315 0 0 0 chr12 32736572 32736607 -111545882 + (CA)n Simple_repeat Simple_repeat 2 36 0 254 346 9 19 chr12 32736821 32736928 -111545561 - L1ME LINE L1 -533 5588 5483 1662 119 131 8 chr12 32736934 32737194 -111545295 - AluSg1 SINE Alu -17 292 1 205 183 33 17 chr12 32737201 32737261 -111545228 + T-rich Low_complexity Low_complexity 4 64 0 421 301 27 0 chr12 32737454 32737600 -111544889 - L1ME LINE L1 -897 5462 5313 1273 151 0 0 chr12 32737607 32737825 -111544664 - L1MA4 LINE L1 -11 6289 6072 2480 191 60 35 chr12 32738630 32739195 -111543294 - L1P LINE L1 -5557 589 11 880 289 29 7 chr12 32739483 32739791 -111542698 + L1ME LINE L1 5485 5799 -371 206 143 41 20 chr12 32739851 32739900 -111542589 + (TA)n Simple_repeat Simple_repeat 2 51 0 2403 185 25 34 chr12 32739982 32740149 -111542340 - L1MB5 LINE L1 -1 6173 6006 2276 108 3 0 chr12 32740149 32740446 -111542043 + AluSq SINE Alu 2 299 -14 2403 185 25 34 chr12 32740446 32740830 -111541659 - L1MB5 LINE L1 -168 6006 5627 524 202 11 0 chr12 32740844 32740933 -111541556 + AluJ/FLAM SINE Alu 2 91 -221 345 158 118 53 chr12 32740935 32741011 -111541478 + HERVL40 LTR ERVL 1067 1147 -4383 3782 261 63 26 chr12 32741542 32742020 -111540469 + HERVL40 LTR ERVL 3181 3640 -1890 414 0 0 0 chr12 32742020 32742066 -111540423 + (CA)n Simple_repeat Simple_repeat 2 47 0 3782 261 63 26 chr12 32742066 32742686 -111539803 + HERVL40 LTR ERVL 3640 4319 -1211 354 191 0 128 chr12 32742695 32742765 -111539724 + MER58A DNA MER1_type 1 58 -283 2202 117 0 3 chr12 32742765 32743064 -111539425 + AluSx SINE Alu 2 299 -13 354 191 0 128 chr12 32743064 32743087 -111539402 + MER58A DNA MER1_type 58 82 -142 234 62 0 0 chr12 32743095 32743127 -111539362 + (CA)n Simple_repeat Simple_repeat 2 33 0 871 262 62 51 chr12 32743127 32743261 -111539228 + HERVL40 LTR ERVL 3675 3818 -1712 1784 50 0 0 chr12 32743261 32743463 -111539026 - AluY SINE Alu -73 238 37 871 262 62 51 chr12 32743463 32743575 -111538914 + HERVL40 LTR ERVL 3818 3927 -1603 681 222 22 0 chr12 32743580 32743715 -111538774 + MER58A DNA MER1_type 87 224 0 555 259 7 14 chr12 32743718 32743857 -111538632 + HERVL40 LTR ERVL 4328 4465 -1065 2230 166 60 114 chr12 32743924 32744504 -111537985 - MER44D DNA MER2_type -1 604 1 523 285 47 99 chr12 32744771 32745174 -111537315 - MER110 LTR ERV1 -4 487 106 2114 119 0 11 chr12 32745571 32745888 -111536601 - AluSx SINE Alu 0 314 1 2266 94 3 10 chr12 32746047 32746346 -111536143 - AluSp SINE Alu -12 301 5 284 253 51 0 chr12 32746696 32746775 -111535714 - LTR37B LTR ERV1 -385 83 1 237 65 0 0 chr12 32746855 32746886 -111535603 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 843 167 7 0 chr12 32746906 32747044 -111535445 - AluJo SINE Alu -173 139 1 1767 107 41 24 chr12 32747622 32747913 -111534576 - AluSx SINE Alu -14 298 3 715 112 0 0 chr12 32747914 32748012 -111534477 - AluJo SINE Alu -176 136 39 894 228 31 24 chr12 32748190 32748444 -111534045 - MIR SINE MIR 0 262 7 295 296 15 45 chr12 32749419 32749551 -111532938 - MIR SINE MIR -14 248 121 229 316 0 0 chr12 32749813 32749892 -111532597 - L2 LINE L2 -3 3269 3191 253 287 52 9 chr12 32750092 32750207 -111532282 + MER65A LTR ERV1 3 122 -323 2269 78 13 32 chr12 32750207 32750515 -111531974 + AluSg SINE Alu 1 302 -8 1268 232 68 0 chr12 32750954 32751234 -111531255 - MER58B DNA MER1_type -26 315 17 462 167 167 37 chr12 32751261 32751277 -111531212 - MER45 DNA AcHobo -918 122 109 2124 92 21 7 chr12 32751277 32751560 -111530929 + AluSq SINE Alu 13 299 -14 462 167 167 37 chr12 32751560 32751651 -111530838 - MER45 DNA AcHobo -931 109 1 2049 87 0 30 chr12 32752235 32752500 -111529989 - AluSg SINE Alu -53 257 1 21 36 0 0 chr12 32752596 32752624 -111529865 + AT_rich Low_complexity Low_complexity 1 28 0 764 300 94 47 chr12 32752959 32753210 -111529279 - LTR33 LTR ERVL 0 521 283 4504 86 60 24 chr12 32753210 32753373 -111529116 - LTR8 LTR ERV1 0 691 535 2266 106 17 0 chr12 32753373 32753675 -111528814 - AluSx SINE Alu -5 307 1 4504 86 60 24 chr12 32753675 32754178 -111528311 - LTR8 LTR ERV1 -156 535 1 764 300 94 47 chr12 32754178 32754393 -111528096 - LTR33 LTR ERVL -238 283 33 2206 105 10 10 chr12 32754509 32754814 -111527675 - AluSx SINE Alu -7 305 1 243 146 0 0 chr12 32755049 32755090 -111527399 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 3756 94 6 6 chr12 32755104 32755615 -111526874 - MER9 LTR ERVK 0 511 1 931 280 121 61 chr12 32755862 32756214 -111526275 - L1MEd LINE L1 -5381 738 408 2348 98 0 22 chr12 32756214 32756532 -111525957 - AluY SINE Alu 0 311 1 931 280 121 61 chr12 32756532 32756562 -111525927 - L1MEd LINE L1 -5711 408 381 2492 91 0 0 chr12 32756562 32756870 -111525619 - AluSx SINE Alu -4 308 1 931 280 121 61 chr12 32756870 32756975 -111525514 - L1MEd LINE L1 -5738 381 221 231 167 42 0 chr12 32756988 32757036 -111525453 - L1MEd LINE L1 -6042 77 28 300 111 0 0 chr12 32757635 32757689 -111524800 + (TCCCC)n Simple_repeat Simple_repeat 5 58 0 669 196 0 43 chr12 32757691 32757829 -111524660 - FLAM_C SINE Alu 0 133 2 2426 85 0 3 chr12 32757863 32758168 -111524321 + AluSq SINE Alu 1 304 -9 2106 117 0 23 chr12 32758184 32758491 -111523998 + AluSx SINE Alu 11 310 -2 22 0 0 0 chr12 32758491 32758513 -111523976 + AT_rich Low_complexity Low_complexity 1 22 0 2082 176 31 5 chr12 32760282 32760673 -111521816 + MER57A LTR ERV1 3 403 0 872 121 0 0 chr12 32760739 32760855 -111521634 - AluSq/x SINE Alu -196 116 1 2208 98 7 0 chr12 32760891 32761178 -111521311 - AluSq SINE Alu -24 289 1 2325 86 0 0 chr12 32761320 32761610 -111520879 + AluY SINE Alu 1 290 -21 226 0 0 56 chr12 32761614 32761650 -111520839 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1659 157 39 25 chr12 32761654 32761935 -111520554 + AluJo SINE Alu 1 285 -27 414 0 0 0 chr12 32761936 32761982 -111520507 + (AATAG)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr12 32761993 32762014 -111520475 + AT_rich Low_complexity Low_complexity 1 21 0 2073 133 0 10 chr12 32762029 32762338 -111520151 + AluSx SINE Alu 1 306 -6 2338 102 0 0 chr12 32762339 32762633 -111519856 + AluSx SINE Alu 1 294 -18 2496 76 0 10 chr12 32762633 32762946 -111519543 + AluY SINE Alu 1 311 0 633 197 98 0 chr12 32762969 32763091 -111519398 + FRAM SINE Alu 3 136 -40 186 71 0 0 chr12 32763218 32763246 -111519243 + (CA)n Simple_repeat Simple_repeat 2 29 0 2404 167 29 29 chr12 32763321 32763418 -111519071 - MER66A LTR ERV1 -3 475 379 1950 138 3 0 chr12 32763418 32763725 -111518764 - AluSx SINE Alu 0 308 1 2404 167 29 29 chr12 32763725 32764075 -111518414 - MER66A LTR ERV1 -98 380 27 221 348 0 0 chr12 32764450 32764519 -111517970 + MIR SINE MIR 86 154 -108 370 274 0 10 chr12 32764524 32764626 -111517863 - MER46C DNA MER2_type -14 324 224 543 259 60 15 chr12 32764677 32764878 -111517611 + L2 LINE L2 3104 3313 0 225 252 37 65 chr12 32764886 32764993 -111517496 + L2 LINE L2 2462 2565 -749 2261 118 0 0 chr12 32765202 32765506 -111516983 + AluSx SINE Alu 9 312 0 270 233 14 0 chr12 32766007 32766080 -111516409 - MIR SINE MIR -61 147 74 268 321 28 0 chr12 32766115 32766221 -111516268 - MIR SINE MIR -1 261 153 322 258 11 22 chr12 32766222 32766311 -111516178 + MER46C DNA MER2_type 2 89 -249 46 16 0 16 chr12 32766393 32766408 -111516081 + AT_rich Low_complexity Low_complexity 1 15 -48 2473 62 0 7 chr12 32766408 32766729 -111515760 - AluSx SINE Alu 0 312 1 46 16 0 16 chr12 32766729 32766777 -111515712 + AT_rich Low_complexity Low_complexity 15 63 0 1893 238 89 26 chr12 32766828 32767336 -111515153 - MLT1E LTR MaLR -53 540 1 1186 179 9 22 chr12 32767426 32767650 -111514839 + AluJb SINE Alu 85 305 -7 221 222 16 0 chr12 32767650 32767713 -111514776 + GA-rich Low_complexity Low_complexity 3 66 0 247 218 55 0 chr12 32767729 32767784 -111514705 - MLT1L LTR MaLR -93 522 465 289 170 19 0 chr12 32767821 32767874 -111514615 - MLT1L LTR MaLR -221 394 341 208 156 67 22 chr12 32768062 32768107 -111514382 + L2 LINE L2 3221 3267 -5 685 244 124 31 chr12 32768194 32768452 -111514037 - MLT1L LTR MaLR -333 282 1 932 169 53 5 chr12 32768566 32768755 -111513734 + L1MB7 LINE L1 5987 6184 0 930 143 0 0 chr12 32769094 32769220 -111513269 - FLAM_C SINE Alu -17 126 1 393 288 117 24 chr12 32769549 32769754 -111512735 - L2 LINE L2 -403 2911 2688 448 250 32 36 chr12 32769755 32769962 -111512527 + L1ME3A LINE L1 5217 5423 -741 2322 101 0 0 chr12 32769982 32770280 -111512209 + AluSc SINE Alu 1 298 -11 2226 102 3 3 chr12 32770309 32770633 -111511856 + AluSc SINE Alu 1 309 0 513 194 43 0 chr12 32770637 32770730 -111511759 + AluJo SINE Alu 126 222 -90 1787 164 111 39 chr12 32770743 32771177 -111511312 - LTR10A LTR ERV1 -63 546 82 523 186 0 0 chr12 32771200 32771286 -111511203 + FAM SINE Alu 79 164 -21 652 221 138 37 chr12 32771473 32771771 -111510718 + L1ME3A LINE L1 5635 5962 -208 330 115 0 0 chr12 32771842 32771894 -111510595 + (CA)n Simple_repeat Simple_repeat 1 52 0 1110 202 0 32 chr12 32771955 32772232 -111510257 - L1M4 LINE L1 -955 5191 4924 21 36 0 0 chr12 32772258 32772286 -111510203 + AT_rich Low_complexity Low_complexity 1 28 0 1269 277 40 70 chr12 32772384 32772583 -111509906 - L2 LINE L2 -832 2482 2279 1410 175 17 55 chr12 32772583 32772875 -111509614 + AluJo SINE Alu 1 281 -31 1269 277 40 70 chr12 32772875 32773303 -111509186 - L2 LINE L2 -1035 2279 1874 2190 121 7 3 chr12 32773703 32774009 -111508480 + AluSq SINE Alu 1 307 -6 21 36 0 0 chr12 32774305 32774333 -111508156 + AT_rich Low_complexity Low_complexity 1 28 0 287 170 19 0 chr12 32774333 32774386 -111508103 + AluSc SINE Alu 130 183 -116 340 259 60 9 chr12 32774451 32774567 -111507922 - L1ME1 LINE L1 -152 6014 5893 695 198 2 25 chr12 32774591 32774692 -111507797 - L1ME1 LINE L1 -236 5915 5818 2231 104 0 17 chr12 32774692 32774991 -111507498 - AluSc SINE Alu -15 294 1 695 198 2 25 chr12 32774991 32775062 -111507427 - L1ME1 LINE L1 -333 5818 5747 1218 163 15 4 chr12 32775062 32775408 -111507081 + L1P5 LINE L1 5126 5474 -677 801 183 52 16 chr12 32775415 32775606 -111506883 - LTR47A LTR ERVL -41 411 214 1467 98 10 0 chr12 32775726 32775920 -111506569 + AluSc SINE Alu 103 298 -11 249 128 0 0 chr12 32775972 32776011 -111506478 + Alu SINE Alu 1 39 -261 2268 104 3 0 chr12 32776012 32776310 -111506179 + AluSq SINE Alu 1 299 -14 1185 133 0 0 chr12 32776310 32776475 -111506014 + AluSg/x SINE Alu 132 296 -14 2446 112 37 49 chr12 32776475 32776955 -111505534 - MER4E LTR ERV1 -316 326 1 345 177 73 10 chr12 32776966 32777062 -111505427 - L1MC4 LINE L1 -501 7541 7440 1952 142 13 13 chr12 32777082 32777392 -111505097 + AluSx SINE Alu 1 310 -2 447 126 63 84 chr12 32777442 32777537 -111504952 - U6 snRNA snRNA 0 107 15 2410 69 0 0 chr12 32777538 32777826 -111504663 + AluY SINE Alu 1 288 -23 506 256 0 12 chr12 32777826 32777986 -111504503 + (CATA)n Simple_repeat Simple_repeat 3 160 0 805 171 0 0 chr12 32778052 32778181 -111504308 + FLAM_C SINE Alu 1 129 -4 245 224 45 97 chr12 32778184 32778318 -111504171 - LTR40b LTR ERVL -7 455 329 476 242 150 65 chr12 32778522 32778828 -111503661 + LTR68 LTR ERV1 405 736 -4 1422 107 46 18 chr12 32779135 32779376 -111503113 - pTR5 LTR ERV1 -107 607 171 375 204 31 20 chr12 32779378 32779476 -111503013 - LTR30 LTR ERV1 -80 642 544 5984 132 58 117 chr12 32779476 32780839 -111501650 - pTR5 LTR ERV1 -413 2025 743 2845 141 24 12 chr12 32780965 32781554 -111500935 + MER4E LTR ERV1 3 766 0 362 238 68 122 chr12 32781659 32781699 -111500790 - MLT1J LTR MaLR -195 316 275 2463 127 53 14 chr12 32781699 32782132 -111500357 + LTR7 LTR ERV1 1 450 0 362 238 68 122 chr12 32782132 32782375 -111500114 - MLT1J LTR MaLR -236 275 47 303 28 0 0 chr12 32782375 32782411 -111500078 + (TG)n Simple_repeat Simple_repeat 2 37 0 5927 65 13 12 chr12 32782498 32783124 -111499365 + MER4E LTR ERV1 1 630 -136 2512 57 10 3 chr12 32783124 32783425 -111499064 + AluY SINE Alu 1 303 -8 5927 65 13 12 chr12 32783425 32783563 -111498926 + MER4E LTR ERV1 630 766 0 870 248 86 48 chr12 32783630 32784026 -111498463 + LTR16A1 LTR ERVL 47 457 0 381 188 89 0 chr12 32784033 32784134 -111498355 + L1MC/D LINE L1 5667 5776 -2032 2237 108 0 3 chr12 32784214 32784511 -111497978 - AluSq SINE Alu -17 296 1 747 189 77 0 chr12 32784516 32784659 -111497830 - LTR8 LTR ERV1 -537 154 1 2522 65 0 0 chr12 32784697 32784991 -111497498 + AluY SINE Alu 1 294 -17 309 203 29 0 chr12 32785123 32785192 -111497297 + LTR10A LTR ERV1 182 252 -357 1955 134 72 33 chr12 32785232 32785591 -111496898 + LTR10A LTR ERV1 176 548 -61 2620 39 3 10 chr12 32785623 32785931 -111496558 + AluY SINE Alu 1 306 -5 1875 166 23 0 chr12 32785947 32786249 -111496240 + AluJb SINE Alu 1 309 -3 1667 145 78 28 chr12 32787042 32787177 -111495312 + AluSq SINE Alu 1 128 -185 2118 101 4 0 chr12 32787177 32787488 -111495001 + AluSg SINE Alu 1 312 0 1667 145 78 28 chr12 32787488 32787633 -111494856 + AluSq SINE Alu 128 296 -17 392 54 0 18 chr12 32787636 32787692 -111494797 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 317 264 113 13 chr12 32787714 32787873 -111494616 + L1M4 LINE L1 3089 3263 -2883 485 360 70 21 chr12 32787894 32788324 -111494165 + L1M4 LINE L1 3374 3824 -2322 1361 102 6 0 chr12 32788411 32788588 -111493901 + AluY SINE Alu 38 215 -96 1619 203 85 91 chr12 32788713 32789230 -111493259 + LTR8A LTR ERV1 214 727 0 309 289 52 77 chr12 32789280 32789561 -111492928 - L1MCb LINE L1 -3092 3472 3199 2109 129 0 7 chr12 32789561 32789870 -111492619 - AluSx SINE Alu -5 307 1 309 289 52 77 chr12 32789870 32789913 -111492576 - L1MCb LINE L1 -3365 3199 3156 2352 164 96 30 chr12 32790084 32790614 -111491875 + LTR49 LTR ERV1 1 565 -30 180 0 0 0 chr12 32790791 32790811 -111491678 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2072 108 10 16 chr12 32791864 32792169 -111490320 - AluSg SINE Alu -7 303 1 389 277 89 78 chr12 32792228 32792565 -111489924 - HAL1b LINE L1 -483 865 533 1723 181 0 30 chr12 32792565 32792869 -111489620 - AluJb SINE Alu -12 300 6 389 277 89 78 chr12 32792869 32793224 -111489265 - HAL1b LINE L1 -815 533 165 347 267 46 38 chr12 32793219 32793350 -111489139 - L1MCb LINE L1 -4883 1671 1540 * 821 268 161 28 chr12 32793377 32793848 -111488641 + LTR1B LTR ERV1 56 589 -237 628 217 25 12 chr12 32793936 32794097 -111488392 - L1MCb LINE L1 -5011 1543 1381 1824 119 98 3 chr12 32794124 32794409 -111488080 - AluSx SINE Alu 0 312 1 823 153 8 0 chr12 32794409 32794533 -111487956 - AluSq/x SINE Alu -178 135 11 399 288 105 48 chr12 32794638 32794867 -111487622 - L1MCb LINE L1 -5279 1275 1034 1944 106 127 15 chr12 32794872 32795051 -111487438 + LTR29 LTR ERV1 1 159 -463 3168 130 27 4 chr12 32795051 32795536 -111486953 + LOR1a LTR ERV1 2 497 0 1944 106 127 15 chr12 32795536 32795696 -111486793 + LTR29 LTR ERV1 159 378 -244 526 158 40 0 chr12 32796826 32796927 -111485562 - FAM SINE Alu -13 172 68 2151 109 0 7 chr12 32796927 32797220 -111485269 - AluSx SINE Alu -16 296 6 3699 198 65 14 chr12 32797233 32798108 -111484381 - L1MCb LINE L1 -4851 1194 275 634 203 0 16 chr12 32798111 32798234 -111484255 - MER57A LTR ERV1 -25 378 258 1587 135 24 105 chr12 32798250 32798584 -111483905 - AluYb8 SINE Alu -11 307 1 912 243 102 49 chr12 32798584 32798889 -111483600 - L1MCb LINE L1 -6094 470 150 1031 192 9 45 chr12 32798901 32799125 -111483364 - AluJo SINE Alu -12 300 85 664 233 72 57 chr12 32799169 32799431 -111483058 - L2 LINE L2 0 3313 3048 451 272 154 5 chr12 32801140 32801335 -111481154 - LTR33 LTR ERVL -8 513 290 380 213 111 8 chr12 32801335 32801469 -111481020 - L1ME4a LINE L1 -261 5860 5713 354 195 12 12 chr12 32801942 32802024 -111480465 + L1M4 LINE L1 2256 2337 -3809 * 1380 198 3 32 chr12 32802021 32802281 -111480208 + L1M4 LINE L1 3604 3855 -2291 1909 171 59 102 chr12 32802281 32802561 -111479928 - MLT1D LTR MaLR 0 505 257 2156 125 0 3 chr12 32802561 32802856 -111479633 + AluSg SINE Alu 1 294 -16 1909 171 59 102 chr12 32802856 32803102 -111479387 - MLT1D LTR MaLR -248 257 2 1380 198 3 32 chr12 32803102 32803154 -111479335 + L1M4 LINE L1 3855 3907 -2239 336 134 72 0 chr12 32803154 32803229 -111479260 + AluS SINE Alu 5 62 -238 1698 139 4 26 chr12 32803815 32804081 -111478408 + AluJo SINE Alu 1 260 -52 776 62 0 18 chr12 32804107 32804219 -111478270 + (GAAA)n Simple_repeat Simple_repeat 2 111 0 889 132 7 21 chr12 32804254 32804398 -111478091 - AluSg/x SINE Alu -8 302 161 2002 116 0 0 chr12 32804398 32804666 -111477823 - AluSx SINE Alu -38 274 7 2352 98 0 0 chr12 32804998 32805303 -111477186 + AluY SINE Alu 1 305 -6 182 213 64 0 chr12 32805429 32805476 -111477013 - MER5B DNA MER1_type -1 177 128 366 275 0 0 chr12 32806605 32806685 -111475804 + MLT1J LTR MaLR 99 178 -333 2655 206 10 20 chr12 32806945 32807455 -111475034 + MLT1D LTR MaLR 1 505 0 2546 66 0 3 chr12 32807566 32807871 -111474618 - AluY SINE Alu -7 304 1 2213 112 0 3 chr12 32807921 32808217 -111474272 - AluSx SINE Alu -17 295 1 2341 87 0 3 chr12 32808429 32808717 -111473772 - AluY SINE Alu -24 287 1 1134 145 0 0 chr12 32809142 32809314 -111473175 + AluJb SINE Alu 135 306 -6 2273 82 32 0 chr12 32809832 32810112 -111472377 + AluY SINE Alu 1 289 -22 1721 185 10 0 chr12 32810151 32810448 -111472041 - AluJb SINE Alu -12 300 1 186 103 0 0 chr12 32810606 32810635 -111471854 + (CA)n Simple_repeat Simple_repeat 2 30 0 2435 84 0 0 chr12 32810649 32810947 -111471542 - AluY SINE Alu -13 298 1 329 210 62 0 chr12 32810948 32811029 -111471460 - L1MC4a LINE L1 -1867 5941 5856 3673 123 37 4 chr12 32811029 32811539 -111470950 - MER1A DNA MER1_type 0 527 1 289 141 0 64 chr12 32811568 32811646 -111470843 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 539 195 25 24 chr12 32811700 32811920 -111470569 + CT-rich Low_complexity Low_complexity 1 220 0 192 77 0 0 chr12 32811963 32811989 -111470500 + (T)n Simple_repeat Simple_repeat 1 26 0 2712 107 71 11 chr12 32812376 32812825 -111469664 + LTR1 LTR ERV1 310 785 0 784 192 0 0 chr12 32813493 32813623 -111468866 - FLAM_C SINE Alu -3 130 1 300 340 87 21 chr12 32813714 32813955 -111468534 - L2 LINE L2 -979 2335 2079 2060 179 127 54 chr12 32814177 32814673 -111467816 + MLT1F LTR MaLR 3 534 -8 373 184 11 19 chr12 32814850 32814931 -111467558 + AluJ/FLAM SINE Alu 1 66 -236 2846 177 101 30 chr12 32815061 32815172 -111467317 + L1MB7 LINE L1 5492 5594 -590 1968 89 85 14 chr12 32815172 32815453 -111467036 + AluY SINE Alu 1 301 -10 2846 177 101 30 chr12 32815453 32815985 -111466504 + L1MB7 LINE L1 5594 6181 -3 338 308 96 31 chr12 32816011 32816331 -111466158 + L1M4 LINE L1 4152 4515 -1631 1782 164 7 3 chr12 32816331 32816624 -111465865 + AluJb SINE Alu 1 294 -18 338 308 96 31 chr12 32816624 32816780 -111465709 + L1M4 LINE L1 4515 4659 -1487 307 200 31 0 chr12 32816918 32816983 -111465506 + L1MC/D LINE L1 5783 5849 -1959 800 164 0 16 chr12 32816993 32817121 -111465368 + AluSq/x SINE Alu 1 126 -187 312 151 0 65 chr12 32817125 32817152 -111465337 + GA-rich Low_complexity Low_complexity 2 29 -59 2055 113 7 45 chr12 32817152 32817461 -111465028 + AluSx SINE Alu 1 297 -15 312 151 0 65 chr12 32817461 32817526 -111464963 + GA-rich Low_complexity Low_complexity 29 88 0 * 395 123 0 27 chr12 32817508 32817581 -111464908 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 297 0 0 0 chr12 32817713 32817746 -111464743 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2031 130 0 18 chr12 32817746 32818031 -111464458 - AluSx SINE Alu -32 280 1 36 23 0 0 chr12 32818096 32818139 -111464350 + AT_rich Low_complexity Low_complexity 1 43 0 3806 182 33 129 chr12 32818324 32818690 -111463799 + L1ME LINE L1 4071 4470 -1676 2405 90 0 6 chr12 32818690 32819001 -111463488 + AluSg SINE Alu 1 309 -1 3806 182 33 129 chr12 32819001 32819050 -111463439 + L1ME LINE L1 4470 4522 -1624 747 127 82 30 chr12 32819050 32819184 -111463305 + FRAM SINE Alu 36 176 0 3806 182 33 129 chr12 32819184 32819950 -111462539 + L1ME LINE L1 4522 5260 -886 821 119 0 0 chr12 32819951 32820069 -111462420 + AluY SINE Alu 1 118 -193 638 225 29 14 chr12 32820232 32820370 -111462119 - MIR SINE MIR -82 180 41 358 310 51 19 chr12 32820677 32820835 -111461654 + L1ME LINE L1 5560 5722 -448 984 189 100 0 chr12 32820931 32821121 -111461368 + L1ME LINE L1 5552 5760 -406 3298 106 0 11 chr12 32821133 32821588 -111460901 - L1PB1 LINE L1 -1 6150 5701 729 191 17 0 chr12 32822142 32822281 -111460208 - FLAM_C SINE Alu 0 141 1 1761 186 7 0 chr12 32822347 32822638 -111459851 - AluJb SINE Alu -19 293 1 2350 106 0 0 chr12 32822642 32822944 -111459545 - AluSq SINE Alu -11 302 1 858 266 200 10 chr12 32823299 32823725 -111458764 - L2 LINE L2 -3 3310 2798 2220 123 3 0 chr12 32823747 32824047 -111458442 + AluSx SINE Alu 1 301 -11 1997 167 45 8 chr12 32824070 32824423 -111458066 - MER47A DNA MER2_type 0 366 1 1018 184 6 6 chr12 32824579 32824753 -111457736 - AluJb SINE Alu -2 310 137 1551 128 27 0 chr12 32824987 32825206 -111457283 + AluSg SINE Alu 1 225 -85 957 102 0 0 chr12 32825312 32825439 -111457050 - AluSc SINE Alu -182 127 1 938 60 0 0 chr12 32825440 32825557 -111456932 + MER4E LTR ERV1 423 539 -227 23 0 0 0 chr12 32825571 32825594 -111456895 + GC_rich Low_complexity Low_complexity 1 23 0 1791 66 9 4 chr12 32825607 32825835 -111456654 + MER4E LTR ERV1 538 766 0 497 163 61 31 chr12 32826522 32826620 -111455869 + AluSg/x SINE Alu 114 214 -96 851 182 0 39 chr12 32826623 32826777 -111455712 + AluJb SINE Alu 149 296 -16 671 238 65 24 chr12 32827095 32827263 -111455226 + FAM SINE Alu 1 175 0 2310 101 3 3 chr12 32827477 32827785 -111454704 - AluSx SINE Alu -2 310 3 573 294 87 13 chr12 32827820 32828051 -111454438 - L2 LINE L2 0 3313 3066 1983 122 24 0 chr12 32829162 32829449 -111453040 + AluSg SINE Alu 1 294 -16 264 225 296 0 chr12 32829594 32829736 -111452753 - L1ME4a LINE L1 -204 5917 5734 290 250 24 12 chr12 32829816 32829900 -111452589 - HsTC2 DNA Tc2 -1813 85 1 2389 60 28 0 chr12 32830001 32830286 -111452203 + AluY SINE Alu 1 293 -18 271 327 30 30 chr12 32830416 32830517 -111451972 - L2 LINE L2 -182 3090 2990 2224 117 0 0 chr12 32830598 32830896 -111451593 + AluSq SINE Alu 1 298 -15 242 331 55 16 chr12 32830915 32831032 -111451457 - L2 LINE L2 -1323 1991 1867 2212 97 17 3 chr12 32831032 32831321 -111451168 + AluSx SINE Alu 1 293 -19 848 163 0 8 chr12 32831351 32831480 -111451009 + AluJb SINE Alu 18 145 -167 2192 107 0 3 chr12 32831481 32831780 -111450709 + AluSx SINE Alu 11 308 -4 288 122 0 0 chr12 32832991 32833032 -111449457 + 5S rRNA rRNA 2 42 -79 225 331 73 44 chr12 32833107 32833243 -111449246 - L2 LINE L2 -411 2903 2764 257 300 25 0 chr12 32833324 32833404 -111449085 - MIR3 SINE MIR 0 208 127 1193 179 155 8 chr12 32833426 32833677 -111448812 - AluJo SINE Alu -16 296 9 522 193 0 34 chr12 32833948 32834067 -111448422 + L1MB8 LINE L1 6055 6169 -9 24 32 0 0 chr12 32834069 32834100 -111448389 + AT_rich Low_complexity Low_complexity 1 31 0 715 146 39 0 chr12 32834848 32834951 -111447538 - FLAM_C SINE Alu -35 108 2 458 296 119 6 chr12 32835855 32836031 -111446458 - MIR3 SINE MIR -12 196 1 1871 88 42 78 chr12 32836759 32837065 -111445424 - AluSc SINE Alu -14 295 1 2382 87 3 0 chr12 32837317 32837615 -111444874 + AluSp SINE Alu 1 299 -14 1936 143 6 25 chr12 32837625 32837939 -111444550 + AluJb SINE Alu 1 308 -4 181 180 40 0 chr12 32837992 32838042 -111444447 + (TA)n Simple_repeat Simple_repeat 2 53 0 1522 166 0 44 chr12 32838178 32838497 -111443992 - AluJb SINE Alu 0 306 1 201 171 0 0 chr12 32838531 32838566 -111443923 + T-rich Low_complexity Low_complexity 2 36 0 2120 108 3 0 chr12 32839014 32839301 -111443188 + AluSx SINE Alu 1 288 -24 25 51 0 0 chr12 32839509 32839548 -111442941 + AT_rich Low_complexity Low_complexity 1 39 0 1323 189 46 21 chr12 32839604 32839884 -111442605 + AluJo SINE Alu 1 287 -25 412 327 81 54 chr12 32839894 32839968 -111442521 - L2 LINE L2 -86 3186 3115 2154 102 7 7 chr12 32839968 32840262 -111442227 + AluSg SINE Alu 1 294 -16 412 327 81 54 chr12 32840262 32840284 -111442205 - L2 LINE L2 -157 3115 3095 2297 93 7 0 chr12 32840284 32840586 -111441903 + AluSq SINE Alu 1 304 -9 412 327 81 54 chr12 32840586 32841022 -111441467 - L2 LINE L2 -177 3095 2636 2218 115 3 0 chr12 32841282 32841586 -111440903 - AluSq SINE Alu -8 305 1 537 161 46 0 chr12 32841590 32841677 -111440812 - AluJo SINE Alu -173 139 49 1729 135 12 0 chr12 32841955 32842235 -111440254 + AluSx SINE Alu 39 321 0 1106 185 14 31 chr12 32842320 32842604 -111439885 - MLT1A1 LTR MaLR 0 365 2 2179 113 3 16 chr12 32842668 32842979 -111439510 + AluSx SINE Alu 1 307 -5 1831 172 7 0 chr12 32843049 32843340 -111439149 + AluJb SINE Alu 1 293 -19 21 0 0 0 chr12 32843788 32843809 -111438680 + AT_rich Low_complexity Low_complexity 1 21 0 1173 175 16 0 chr12 32843824 32844007 -111438482 - AluJo SINE Alu -126 186 1 1153 109 0 0 chr12 32844245 32844392 -111438097 + AluSq/x SINE Alu 1 147 -165 942 83 0 0 chr12 32844505 32844625 -111437864 + AluSg/x SINE Alu 180 299 -11 766 171 171 0 chr12 32844627 32844779 -111437710 - MER2 DNA MER2_type -167 178 1 2021 157 6 14 chr12 32844779 32845124 -111437365 - L1MB7 LINE L1 -355 5829 5488 2141 105 0 7 chr12 32845125 32845420 -111437069 - AluSx SINE Alu 0 312 20 600 271 33 17 chr12 32845432 32845613 -111436876 - MIR SINE MIR -65 197 14 679 171 23 54 chr12 32846024 32846153 -111436336 + AluJo SINE Alu 11 135 -177 1265 189 5 0 chr12 32846153 32846375 -111436114 + AluJb SINE Alu 85 307 -5 1863 153 0 0 chr12 32846375 32846690 -111435799 + AluSx SINE Alu 1 315 0 500 238 79 38 chr12 32847315 32847551 -111434938 - MIR SINE MIR -14 248 9 216 0 0 0 chr12 32847595 32847619 -111434870 + (A)n Simple_repeat Simple_repeat 1 24 0 1556 146 3 93 chr12 32847619 32847940 -111434549 + AluJb SINE Alu 1 292 -20 567 226 9 0 chr12 32848135 32848250 -111434239 + MLT2B1 LTR ERVL 1 116 -404 1102 102 0 7 chr12 32848252 32848399 -111434090 + AluSq/x SINE Alu 3 148 -165 1917 153 3 3 chr12 32848672 32848973 -111433516 + AluJb SINE Alu 1 301 -11 2309 91 0 26 chr12 32849125 32849265 -111433224 + AluSx SINE Alu 1 143 -169 2287 111 0 0 chr12 32849265 32849571 -111432918 + AluSx SINE Alu 3 308 -4 2309 91 0 26 chr12 32849571 32849737 -111432752 + AluSx SINE Alu 143 299 -13 351 275 0 8 chr12 32849884 32849984 -111432505 + MIR SINE MIR 52 147 -61 1000 106 0 0 chr12 32849989 32850121 -111432368 + FLAM_C SINE Alu 1 132 -11 471 234 16 8 chr12 32850132 32850260 -111432229 + MIR SINE MIR 134 262 0 2975 198 11 2 chr12 32850935 32851487 -111431002 - MER41D LTR ERV1 0 557 1 1066 157 0 0 chr12 32851520 32851692 -111430797 - AluSg/x SINE Alu -7 303 132 1200 263 76 40 chr12 32851697 32852279 -111430210 - MER41D-int LTR ERV1 -27 7729 7127 2422 58 0 0 chr12 32852279 32852573 -111429916 - AluY SINE Alu -17 294 1 2036 86 45 7 chr12 32853614 32853904 -111428585 - AluSq SINE Alu -12 301 1 2070 109 0 14 chr12 32854034 32854328 -111428161 - AluSx SINE Alu -22 290 1 189 0 0 0 chr12 32854405 32854426 -111428063 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 771 138 9 0 chr12 32854429 32854545 -111427944 - AluJb SINE Alu -194 118 2 2234 92 0 10 chr12 32854875 32855178 -111427311 + AluSg SINE Alu 1 300 -10 425 287 26 67 chr12 32855266 32855310 -111427179 - MIR3 SINE MIR -11 197 153 4028 122 63 8 chr12 32855310 32855976 -111426513 - MER39 LTR ERV1 -4 703 1 425 287 26 67 chr12 32855976 32856126 -111426363 - MIR3 SINE MIR -55 153 11 2438 52 0 7 chr12 32856250 32856556 -111425933 - AluY SINE Alu -7 304 1 693 209 23 0 chr12 32856564 32856693 -111425796 - AluJb SINE Alu -179 133 2 240 260 137 0 chr12 32856693 32856766 -111425723 + MIR SINE MIR 113 195 -67 4010 139 13 6 chr12 32856841 32857472 -111425017 - MER41B LTR ERV1 0 635 1 1636 145 50 7 chr12 32857717 32858000 -111424489 - AluJo SINE Alu -15 297 3 819 308 53 32 chr12 32858672 32859010 -111423479 - L2 LINE L2 0 3313 2969 1981 43 110 7 chr12 32859017 32859299 -111423190 + AluY SINE Alu 1 311 0 1237 126 5 0 chr12 32859299 32859490 -111422999 + AluSp SINE Alu 121 312 -1 2123 85 3 0 chr12 32859495 32859817 -111422672 + AluSp SINE Alu 1 323 0 2190 95 3 0 chr12 32859884 32860179 -111422310 + AluSc SINE Alu 1 296 -13 209 299 72 72 chr12 32860222 32860319 -111422170 + L2 LINE L2 3139 3235 -37 1840 123 0 65 chr12 32860324 32860504 -111421985 - AluSx SINE Alu -8 304 153 2259 103 0 0 chr12 32860504 32860816 -111421673 - AluSx SINE Alu 0 312 1 1840 123 0 65 chr12 32860816 32860960 -111421529 - AluSx SINE Alu -159 153 1 2040 112 0 13 chr12 32861164 32861469 -111421020 - AluSx SINE Alu -11 301 1 1460 154 4 11 chr12 32861483 32861749 -111420740 + L1MA6 LINE L1 6037 6300 0 434 132 44 0 chr12 32861773 32861841 -111420648 + MLT1A2 LTR MaLR 1 71 -303 2114 114 3 0 chr12 32861844 32862142 -111420347 - AluSq SINE Alu -14 299 1 2475 78 44 0 chr12 32862142 32862486 -111420003 - L1PA11 LINE L1 -2 6172 5814 784 169 0 0 chr12 32862486 32862616 -111419873 - FRAM SINE Alu -9 167 38 2178 97 13 3 chr12 32862975 32863284 -111419205 + AluSx SINE Alu 1 312 0 1215 249 61 32 chr12 32863490 32863900 -111418589 - MER90 LTR ERV1 -87 527 106 510 266 35 56 chr12 32863901 32864187 -111418302 - MER34B LTR ERV1 0 565 286 2958 93 42 9 chr12 32864187 32864571 -111417918 + MLT2A1 LTR ERVL 1 402 -42 672 99 0 0 chr12 32864571 32864682 -111417807 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 2958 93 42 9 chr12 32864682 32864727 -111417762 + MLT2A1 LTR ERVL 402 444 0 361 228 105 18 chr12 32864822 32864936 -111417553 - MER34B LTR ERV1 -441 124 1 844 293 35 4 chr12 32865076 32865308 -111417181 + MIR SINE MIR 6 244 -18 2031 209 87 27 chr12 32865486 32866036 -111416453 - MER92B LTR ERV1 0 636 54 2118 99 6 13 chr12 32866036 32866383 -111416106 - AluSx SINE Alu 0 345 1 1936 52 0 12 chr12 32866394 32866642 -111415847 - AluY SINE Alu -10 301 57 456 123 0 0 chr12 32866645 32866710 -111415779 - MER92B LTR ERV1 -571 65 1 2104 94 3 29 chr12 32866969 32867278 -111415211 + AluSq SINE Alu 1 301 -12 2266 79 7 3 chr12 32867785 32868089 -111414400 - AluSq SINE Alu -3 310 6 285 236 69 14 chr12 32868428 32868500 -111413989 - MIR3 SINE MIR 0 208 133 2211 130 55 0 chr12 32868763 32869108 -111413381 + THE1B LTR MaLR 1 364 0 2151 105 0 0 chr12 32869209 32869503 -111412986 - AluSx SINE Alu -18 294 1 830 269 105 61 chr12 32869600 32870106 -111412383 + MLT1K LTR MaLR 57 584 -4 688 160 50 0 chr12 32870172 32870291 -111412198 - FLAM_C SINE Alu -18 125 1 849 181 7 0 chr12 32871165 32871381 -111411108 + FRAM SINE Alu 20 236 0 1518 174 7 14 chr12 32871594 32871887 -111410602 - AluJo SINE Alu -21 291 1 1443 161 122 0 chr12 32871931 32872186 -111410303 + AluJb SINE Alu 2 287 -15 22 70 0 0 chr12 32872248 32872291 -111410198 + AT_rich Low_complexity Low_complexity 1 43 0 1707 161 7 7 chr12 32872369 32872674 -111409815 - AluJb SINE Alu -7 305 1 2128 95 7 3 chr12 32872795 32873091 -111409398 + AluSc SINE Alu 1 297 -12 289 204 0 0 chr12 32873100 32873154 -111409335 + L1M4 LINE L1 2667 2720 -3426 1768 128 0 55 chr12 32873160 32873516 -111408973 + AluSx SINE Alu 1 338 0 473 292 37 35 chr12 32874005 32874200 -111408289 + MIR SINE MIR 36 229 -33 1264 84 6 0 chr12 32874552 32874719 -111407770 + AluSq SINE Alu 135 302 -11 189 0 0 0 chr12 32875015 32875036 -111407453 + (A)n Simple_repeat Simple_repeat 1 21 0 957 160 11 17 chr12 32876282 32876457 -111406032 + FAM SINE Alu 1 174 -1 1650 154 7 18 chr12 32876457 32876772 -111405717 + AluJb SINE Alu 6 317 0 2058 122 10 0 chr12 32876785 32877088 -111405401 + AluSx SINE Alu 1 306 -6 1634 146 19 41 chr12 32878149 32878465 -111404024 + AluSx SINE Alu 1 309 -3 1037 185 0 0 chr12 32878466 32878639 -111403850 + AluJb SINE Alu 134 306 -6 1880 122 0 20 chr12 32878642 32878938 -111403551 + AluSx SINE Alu 1 290 -22 244 138 0 35 chr12 32878949 32879007 -111403482 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 1625 148 10 61 chr12 32879075 32879385 -111403104 + AluJo SINE Alu 1 294 -18 24 67 0 0 chr12 32879853 32879898 -111402591 + AT_rich Low_complexity Low_complexity 1 45 0 2522 52 0 3 chr12 32879903 32880211 -111402278 + AluY SINE Alu 1 307 -4 1763 158 0 10 chr12 32880322 32880626 -111401863 + AluJb SINE Alu 7 307 -5 344 253 281 0 chr12 32881275 32881453 -111401036 + MIR SINE MIR 32 259 -3 1778 145 16 7 chr12 32881854 32882113 -111400376 + AluSx SINE Alu 1 265 -47 210 37 0 0 chr12 32882113 32882140 -111400349 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1778 145 16 7 chr12 32882140 32882184 -111400305 + AluSx SINE Alu 265 307 -5 379 174 11 11 chr12 32882184 32882276 -111400213 + GA-rich Low_complexity Low_complexity 3 94 0 31 0 0 0 chr12 32882433 32882464 -111400025 + AT_rich Low_complexity Low_complexity 1 31 0 1901 153 0 6 chr12 32882955 32883269 -111399220 - AluSx SINE Alu 0 312 1 1621 153 28 25 chr12 32883298 32883580 -111398909 + AluJb SINE Alu 1 283 -29 2047 97 20 13 chr12 32883887 32884187 -111398302 + AluSp SINE Alu 1 302 -11 1372 210 76 34 chr12 32884283 32884611 -111397878 + MER2 DNA MER2_type 2 343 -1 180 221 255 90 chr12 32884725 32884870 -111397619 - MIR3 SINE MIR -39 169 1 381 230 42 204 chr12 32885332 32885486 -111397003 + MIR SINE MIR 1 178 -84 2156 104 0 0 chr12 32885486 32885784 -111396705 + AluSg SINE Alu 1 298 -12 381 230 42 204 chr12 32885784 32885869 -111396620 + MIR SINE MIR 178 182 -80 2108 121 0 3 chr12 32885869 32886182 -111396307 + AluSx SINE Alu 1 312 0 381 230 42 204 chr12 32886182 32886250 -111396239 + MIR SINE MIR 182 259 -3 254 247 0 56 chr12 32886676 32886765 -111395724 + CT-rich Low_complexity Low_complexity 6 89 0 1898 139 60 117 chr12 32886935 32887005 -111395484 - MSTB1 LTR MaLR 0 432 360 1538 147 17 51 chr12 32887005 32887298 -111395191 + AluJo SINE Alu 1 283 -29 1898 139 60 117 chr12 32887298 32887680 -111394809 - MSTB1 LTR MaLR -72 360 6 188 301 263 26 chr12 32888018 32888174 -111394315 + MIR3 SINE MIR 6 198 -10 26 50 0 0 chr12 32888963 32889003 -111393486 + AT_rich Low_complexity Low_complexity 1 40 0 2434 224 97 47 chr12 32889466 32890010 -111392479 + L2 LINE L2 2022 2537 -776 2232 97 10 6 chr12 32890010 32890321 -111392168 - AluSx SINE Alu 0 312 1 2434 224 97 47 chr12 32890321 32890869 -111391620 + L2 LINE L2 2537 3185 -128 1739 168 45 15 chr12 32890869 32891203 -111391286 - MER2 DNA MER2_type 0 344 1 2434 224 97 47 chr12 32891203 32891337 -111391152 + L2 LINE L2 3185 3311 -2 25 0 0 0 chr12 32893325 32893350 -111389139 + GC_rich Low_complexity Low_complexity 1 25 0 28 79 0 0 chr12 32893485 32893548 -111388941 + GC_rich Low_complexity Low_complexity 1 63 0 28 29 0 0 chr12 32893651 32893686 -111388803 + GC_rich Low_complexity Low_complexity 1 35 0 708 163 0 52 chr12 32894431 32894566 -111387923 + FLAM_C SINE Alu 1 128 -5 21 0 0 0 chr12 32894570 32894591 -111387898 + AT_rich Low_complexity Low_complexity 1 21 0 787 126 8 31 chr12 32894591 32894718 -111387771 - FLAM_C SINE Alu -9 124 1 1037 201 18 14 chr12 32894987 32895206 -111387283 + AluJo SINE Alu 1 220 -92 347 56 19 74 chr12 32895207 32895261 -111387228 + AluSg/x SINE Alu 85 131 -169 2138 92 10 7 chr12 32895302 32895606 -111386883 + AluSc SINE Alu 1 305 -4 182 331 71 55 chr12 32895711 32895838 -111386651 + L2 LINE L2 3139 3267 -5 2052 110 16 13 chr12 32895930 32896240 -111386249 + AluSx SINE Alu 1 311 -1 605 125 0 80 chr12 32896270 32896292 -111386197 - U5 snRNA snRNA -13 103 81 2149 107 3 0 chr12 32896292 32896592 -111385897 + AluSq SINE Alu 1 301 -12 605 125 0 80 chr12 32896592 32896681 -111385808 - U5 snRNA snRNA -35 81 1 1508 147 0 19 chr12 32897704 32897962 -111384527 - AluJb SINE Alu -49 263 11 306 188 50 40 chr12 32897962 32898063 -111384426 + LTR41 LTR ERVL 656 757 -16 1629 226 53 27 chr12 32898068 32898444 -111384045 + L1ME1 LINE L1 5733 6122 -44 2333 81 0 0 chr12 32898444 32898739 -111383750 - AluSx SINE Alu -17 295 1 1629 226 53 27 chr12 32898739 32898774 -111383715 + L1ME1 LINE L1 6122 6155 -11 851 197 0 0 chr12 32898774 32898921 -111383568 + AluJb SINE Alu 134 280 -32 288 77 0 0 chr12 32898921 32898960 -111383529 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 614 299 116 9 chr12 32899188 32899412 -111383077 + MIR SINE MIR 15 262 0 339 99 28 42 chr12 32899462 32899533 -111382956 - AluSp/q SINE Alu -1 302 233 1110 178 43 66 chr12 32899930 32900049 -111382440 - AluJo SINE Alu -60 252 132 1679 158 23 7 chr12 32900049 32900353 -111382136 - AluJb SINE Alu -3 309 1 1110 178 43 66 chr12 32900353 32900491 -111381998 - AluJo SINE Alu -180 132 1 1970 117 3 3 chr12 32900857 32901147 -111381342 + AluSx SINE Alu 5 294 -18 2006 204 19 45 chr12 32901242 32901713 -111380776 + MLT1C LTR MaLR 6 464 -3 338 0 24 0 chr12 32902034 32902076 -111380413 + (TTG)n Simple_repeat Simple_repeat 2 44 0 854 138 0 0 chr12 32902084 32902200 -111380289 - FLAM_C SINE Alu -26 117 2 2300 117 3 0 chr12 32902341 32902649 -111379840 + AluSx SINE Alu 1 309 -3 563 319 81 39 chr12 32903148 32903505 -111378984 + MLT1K LTR MaLR 199 570 -18 2524 66 0 0 chr12 32903587 32903888 -111378601 + AluY SINE Alu 1 301 -10 2186 88 0 41 chr12 32903942 32904259 -111378230 - AluY SINE Alu -7 304 1 1996 120 3 10 chr12 32904361 32904660 -111377829 - AluSg SINE Alu -13 297 1 704 90 10 0 chr12 32904783 32904883 -111377606 - AluY SINE Alu -209 102 2 2395 84 0 7 chr12 32904986 32905285 -111377204 - AluSg SINE Alu -13 297 1 344 265 93 12 chr12 32905401 32905563 -111376926 + L1MC/D LINE L1 5586 5760 -2048 734 176 48 0 chr12 32905575 32905700 -111376789 + AluJ SINE Alu 1 131 -181 39 0 0 0 chr12 32905701 32905740 -111376749 + AT_rich Low_complexity Low_complexity 1 39 0 2218 131 0 6 chr12 32905861 32906173 -111376316 + AluSx SINE Alu 1 310 -2 240 179 128 39 chr12 32906488 32906566 -111375923 - L2 LINE L2 0 3313 3229 950 181 6 17 chr12 32906643 32906820 -111375669 + AluJ SINE Alu 133 307 -5 1222 134 0 0 chr12 32907097 32907269 -111375220 - AluSg/x SINE Alu -1 311 140 1387 222 67 0 chr12 32907295 32907461 -111375028 - AluJb SINE Alu -9 303 109 282 29 0 0 chr12 32907461 32907496 -111374993 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 1387 222 67 0 chr12 32907496 32907613 -111374876 - AluJb SINE Alu -203 109 1 2071 167 25 11 chr12 32907748 32908108 -111374381 - MLT1A1 LTR MaLR 0 365 1 538 144 63 0 chr12 32909130 32909241 -111373248 - L1MA8 LINE L1 0 6291 6174 391 105 0 0 chr12 32909282 32909339 -111373150 - AluSx SINE Alu -2 300 244 1197 134 0 18 chr12 32909339 32909510 -111372979 - AluSx SINE Alu -144 168 1 579 176 0 64 chr12 32909544 32909669 -111372820 - FLAM_C SINE Alu -14 129 13 697 152 9 0 chr12 32909709 32909821 -111372668 + FLAM_A SINE Alu 18 130 -12 2491 82 0 16 chr12 32909821 32910136 -111372353 + AluSq SINE Alu 1 310 -3 2259 183 36 5 chr12 32910165 32910586 -111371903 + Tigger2a DNA MER2_type 1 434 0 617 190 17 0 chr12 32910771 32910887 -111371602 + FLAM_C SINE Alu 5 122 -11 21 57 0 0 chr12 32910887 32910922 -111371567 + AT_rich Low_complexity Low_complexity 1 35 0 1197 176 0 0 chr12 32910982 32911170 -111371319 + AluJ SINE Alu 5 192 -120 2528 72 6 3 chr12 32911172 32911714 -111370775 + LTR10E LTR ERV1 1 621 -12 1312 33 0 0 chr12 32911717 32911868 -111370621 + L1PA3 LINE L1 6002 6152 -3 726 186 0 0 chr12 32911905 32912029 -111370460 + AluJ SINE Alu 188 311 -1 360 191 11 157 chr12 32912836 32913014 -111369475 - L1MC5 LINE L1 -45 7916 7765 2116 136 3 7 chr12 32913024 32913333 -111369156 + AluSx SINE Alu 5 312 0 2433 88 0 0 chr12 32913335 32913640 -111368849 + AluY SINE Alu 1 305 -6 35 24 0 0 chr12 32913640 32913682 -111368807 + AT_rich Low_complexity Low_complexity 1 42 0 2251 123 0 0 chr12 32913691 32913992 -111368497 + AluSx SINE Alu 1 301 -11 716 144 72 50 chr12 32914170 32914309 -111368180 + FLAM_C SINE Alu 2 143 0 629 217 103 53 chr12 32914808 32915055 -111367434 - MLT1H1 LTR MaLR -261 281 42 1453 142 14 142 chr12 32915372 32915488 -111367001 + AluJo SINE Alu 2 131 -171 2496 87 0 0 chr12 32915488 32915799 -111366690 + AluY SINE Alu 1 311 0 1453 142 14 142 chr12 32915799 32916026 -111366463 + AluJo SINE Alu 131 301 -1 772 98 46 23 chr12 32916038 32916211 -111366278 + GA-rich Low_complexity Low_complexity 2 178 0 340 264 22 0 chr12 32916228 32916319 -111366170 + MIR SINE MIR 1 93 -169 189 0 0 0 chr12 32918208 32918229 -111364260 + (A)n Simple_repeat Simple_repeat 1 21 0 2531 162 73 7 chr12 32919753 32920192 -111362297 + MER21B LTR ERV1 1 468 -395 2242 102 0 0 chr12 32920199 32920483 -111362006 - AluSc SINE Alu -25 284 1 192 77 0 0 chr12 32920484 32920510 -111361979 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 884 145 8 0 chr12 32920510 32920641 -111361848 - AluSg/x SINE Alu -33 277 146 1297 165 91 8 chr12 32920642 32920885 -111361604 + MER21B LTR ERV1 463 725 -138 800 164 21 14 chr12 32920942 32921082 -111361407 - AluJb SINE Alu -23 289 149 474 64 167 0 chr12 32921111 32921189 -111361300 + MER21A LTR ERV1 814 904 -27 753 156 28 14 chr12 32921335 32921476 -111361013 + LTR54 LTR ERV1 1 143 -367 3070 145 32 0 chr12 32921480 32921976 -111360513 - MER41E LTR ERV1 0 512 1 642 138 51 174 chr12 32922061 32922257 -111360232 + LTR54 LTR ERV1 146 317 -193 1942 145 0 19 chr12 32922276 32922587 -111359902 - AluSx SINE Alu -5 307 3 1062 88 0 22 chr12 32922589 32922726 -111359763 - AluSq/x SINE Alu -179 134 1 1933 153 3 3 chr12 32922878 32923179 -111359310 - AluJb SINE Alu -11 301 1 1109 102 0 7 chr12 32923452 32923599 -111358890 - AluSq/x SINE Alu -165 148 3 566 226 9 0 chr12 32923601 32923716 -111358773 - MLT2B2 LTR ERVL -399 116 1 1506 146 3 99 chr12 32923911 32924234 -111358255 - AluJb SINE Alu -20 292 1 216 0 0 0 chr12 32924234 32924258 -111358231 + (T)n Simple_repeat Simple_repeat 1 24 0 442 238 79 38 chr12 32924302 32924538 -111357951 + MIR SINE MIR 9 248 -14 1884 153 0 0 chr12 32925163 32925478 -111357011 - AluSx SINE Alu 0 315 1 1273 189 5 0 chr12 32925478 32925700 -111356789 - AluJb SINE Alu -5 307 85 2332 105 3 0 chr12 32925926 32926232 -111356257 - AluSq SINE Alu -6 307 1 383 55 36 0 chr12 32926891 32926946 -111355543 - L1MA2 LINE L1 -6 6298 6242 1553 121 55 0 chr12 32927225 32927481 -111355008 - L1MA2 LINE L1 0 6304 6035 2419 73 7 0 chr12 32927491 32927794 -111354695 - AluSp SINE Alu -8 305 1 190 333 49 0 chr12 32927833 32927914 -111354575 - L2 LINE L2 -680 2634 2550 1839 155 30 10 chr12 32928281 32928577 -111353912 - AluJo SINE Alu -10 302 1 654 119 30 0 chr12 32928641 32928742 -111353747 + AluSg/x SINE Alu 196 299 -11 183 80 0 0 chr12 32930030 32930055 -111352434 + (T)n Simple_repeat Simple_repeat 1 25 0 1605 115 0 0 chr12 32930055 32930273 -111352216 + AluSg/x SINE Alu 91 308 -2 2303 99 20 3 chr12 32930274 32930577 -111351912 + AluSg SINE Alu 1 308 -2 1726 167 0 27 chr12 32930587 32930887 -111351602 + AluJb SINE Alu 1 292 -20 1398 176 9 108 chr12 32930945 32931129 -111351360 - AluJb SINE Alu 0 302 101 2023 130 0 0 chr12 32931129 32931406 -111351083 - AluSq SINE Alu -36 277 1 2424 87 0 0 chr12 32931412 32931712 -111350777 - AluSq SINE Alu -13 300 1 1398 176 9 108 chr12 32931712 32931855 -111350634 - AluJb SINE Alu -206 96 1 1804 157 0 7 chr12 32931874 32932160 -111350329 - AluJb SINE Alu -18 294 11 450 0 0 0 chr12 32932164 32932214 -111350275 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2052 134 0 0 chr12 32932214 32932498 -111349991 - AluSg SINE Alu -26 284 1 2181 108 3 3 chr12 32932502 32932798 -111349691 - AluSx SINE Alu -16 296 1 1933 130 11 3 chr12 32933468 32933752 -111348737 - AluSx SINE Alu -26 286 1 2324 71 0 0 chr12 32933768 32934081 -111348408 - AluSg SINE Alu 0 313 1 565 260 160 28 chr12 32934240 32934559 -111347930 + MLT1J LTR MaLR 151 511 0 1951 145 6 22 chr12 32934666 32934983 -111347506 + AluSx SINE Alu 1 312 0 2382 101 7 0 chr12 32934997 32935304 -111347185 + AluSx SINE Alu 1 309 -3 444 296 112 16 chr12 32935468 32935805 -111346684 - LTR16A LTR ERVL -6 444 24 2433 92 0 0 chr12 32936127 32936431 -111346058 - AluSq SINE Alu -9 304 1 817 164 8 0 chr12 32936460 32936588 -111345901 - FLAM_C SINE Alu -14 129 1 525 232 166 33 chr12 32936738 32936949 -111345540 + L1ME LINE L1 5446 5684 -437 609 290 50 27 chr12 32936950 32937040 -111345449 - MIR SINE MIR -17 245 159 1747 176 3 17 chr12 32937040 32937357 -111345132 - AluJo SINE Alu 0 312 1 609 290 50 27 chr12 32937357 32937487 -111345002 - MIR SINE MIR -103 159 20 2209 91 17 3 chr12 32937693 32937989 -111344500 - AluSp SINE Alu -13 300 1 2467 78 0 13 chr12 32937989 32938295 -111344194 - AluSc SINE Alu -7 302 1 1811 129 93 0 chr12 32938620 32938900 -111343589 - AluSx SINE Alu -6 306 1 2028 153 9 38 chr12 32938989 32939336 -111343153 - MER1B DNA MER1_type 0 337 1 1867 153 21 0 chr12 32939583 32939865 -111342624 - AluJb SINE Alu -20 292 5 551 169 0 0 chr12 32940759 32940848 -111341641 - FLAM_C SINE Alu -21 122 34 1820 149 9 41 chr12 32941190 32941303 -111341186 + AluJb SINE Alu 1 116 -196 1998 119 35 3 chr12 32941303 32941589 -111340900 + AluSg SINE Alu 1 295 -15 1820 149 9 41 chr12 32941589 32941790 -111340699 + AluJb SINE Alu 116 305 -7 1168 152 0 52 chr12 32942248 32942459 -111340030 - AluJo SINE Alu -31 281 82 2368 96 0 3 chr12 32942485 32942787 -111339702 - AluSp SINE Alu -10 303 3 2188 97 3 29 chr12 32942906 32943217 -111339272 - AluSx SINE Alu -9 303 1 535 123 0 0 chr12 32943388 32943461 -111339028 - AluSp SINE Alu -112 201 129 2235 99 0 3 chr12 32943467 32943777 -111338712 - AluSx SINE Alu 0 309 1 319 228 63 70 chr12 32943803 32944029 -111338460 + MER34B LTR ERV1 362 734 -53 2285 110 3 3 chr12 32944070 32944378 -111338111 + AluSx SINE Alu 1 308 -4 407 282 46 36 chr12 32945276 32945482 -111337007 - MIR SINE MIR -19 243 36 194 0 39 0 chr12 32945971 32945997 -111336492 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2289 107 0 22 chr12 32945999 32946317 -111336172 - AluSq SINE Alu -2 311 1 1997 100 52 0 chr12 32946336 32946607 -111335882 - AluSx SINE Alu -14 298 14 1585 215 26 0 chr12 32946956 32947258 -111335231 - AluJb SINE Alu -2 310 1 2408 97 3 0 chr12 32947267 32947575 -111334914 - AluSp SINE Alu -3 310 2 1387 295 105 51 chr12 32947577 32948649 -111333840 + L2 LINE L2 1929 3090 -223 814 163 0 0 chr12 32948649 32948778 -111333711 + FLAM_C SINE Alu 2 130 -3 1387 295 105 51 chr12 32948778 32949015 -111333474 + L2 LINE L2 3090 3313 0 2212 102 99 9 chr12 32949092 32949434 -111333055 + THE1C LTR MaLR 3 375 0 2361 104 3 0 chr12 32949505 32949812 -111332677 - AluSc SINE Alu -1 308 1 301 289 104 96 chr12 32950104 32950498 -111331991 - MLT1K LTR MaLR -10 578 182 1849 176 7 3 chr12 32950678 32950985 -111331504 + AluJb SINE Alu 1 308 -4 1141 140 0 0 chr12 32951152 32951323 -111331166 + AluSg/x SINE Alu 137 307 -5 2197 96 4 0 chr12 32951325 32951631 -111330858 + AluSg SINE Alu 1 307 0 1750 171 0 16 chr12 32952666 32952971 -111329518 + AluJo SINE Alu 1 300 -12 2252 92 3 0 chr12 32953130 32953423 -111329066 + AluSg SINE Alu 1 294 -16 302 303 33 25 chr12 32953878 32954000 -111328489 + MIR SINE MIR 67 189 -73 333 61 82 0 chr12 32954021 32954070 -111328419 - MADE1 DNA Mariner -27 53 1 678 256 18 0 chr12 32954127 32954295 -111328194 + FAM SINE Alu 1 171 -4 2409 70 3 0 chr12 32954447 32954772 -111327717 + AluSp SINE Alu 1 326 0 2158 127 10 0 chr12 32954831 32955130 -111327359 - AluSx SINE Alu -10 302 1 553 198 18 90 chr12 32955130 32955297 -111327192 - MER58B DNA MER1_type -6 335 181 1874 158 3 0 chr12 32955297 32955589 -111326900 - AluJb SINE Alu -19 293 1 1559 188 31 0 chr12 32955590 32955878 -111326611 - AluJb SINE Alu -15 297 1 384 244 71 0 chr12 32955908 32956035 -111326454 - L1ME4a LINE L1 -265 5856 5721 2284 96 0 0 chr12 32956070 32956361 -111326128 - AluSg SINE Alu -19 291 1 183 80 0 0 chr12 32956391 32956416 -111326073 + (A)n Simple_repeat Simple_repeat 1 25 0 1332 125 5 34 chr12 32956519 32956697 -111325792 - AluSg/x SINE Alu 0 306 134 210 37 0 0 chr12 32956707 32956734 -111325755 + (TG)n Simple_repeat Simple_repeat 2 28 0 2340 88 10 7 chr12 32956734 32957031 -111325458 - AluSg SINE Alu -9 301 1 1332 125 5 34 chr12 32957031 32957081 -111325408 - AluSg/x SINE Alu -172 134 84 2256 71 0 37 chr12 32957751 32958076 -111324413 - AluY SINE Alu 0 314 1 2083 85 53 7 chr12 32958273 32958556 -111323933 - AluSx SINE Alu -16 296 1 378 0 0 0 chr12 32959216 32959258 -111323231 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1697 156 0 35 chr12 32959265 32959553 -111322936 - AluJo SINE Alu -34 278 1 2254 104 0 13 chr12 32959589 32959898 -111322591 + AluSg1 SINE Alu 1 305 -4 1265 80 6 0 chr12 32959898 32960061 -111322428 + AluSp SINE Alu 134 297 -16 282 337 140 6 chr12 32960065 32960243 -111322246 - MIR SINE MIR -10 252 51 200 180 60 0 chr12 32961108 32961158 -111321331 + (CGTG)n Simple_repeat Simple_repeat 4 56 0 1551 260 71 31 chr12 32961570 32962103 -111320386 - MLT1F1 LTR MaLR -1 566 1 2180 105 0 40 chr12 32962383 32962708 -111319781 + AluSx SINE Alu 1 312 0 350 177 63 13 chr12 32962904 32962983 -111319506 + L2 LINE L2 3184 3266 -47 306 271 121 58 chr12 32963000 32963207 -111319282 - L2 LINE L2 -850 2464 2245 2187 110 3 0 chr12 32963558 32963858 -111318631 - AluSg SINE Alu -9 301 1 663 190 22 15 chr12 32963890 32964027 -111318462 - AluJb SINE Alu -39 273 136 2163 108 7 3 chr12 32964050 32964346 -111318143 + AluSq SINE Alu 1 297 -16 608 130 0 83 chr12 32964383 32964491 -111317998 + U6 snRNA snRNA 1 99 -8 836 168 0 0 chr12 32964491 32964628 -111317861 - AluSp/q SINE Alu -13 300 164 2409 92 7 10 chr12 32964854 32965160 -111317329 + AluSx SINE Alu 1 305 -7 257 217 67 0 chr12 32965390 32965450 -111317039 + MER116 DNA Mariner 1 64 -16 2399 54 7 0 chr12 32965452 32965765 -111316724 + AluSp SINE Alu 1 315 0 753 160 7 35 chr12 32965848 32965992 -111316497 - FLAM_C SINE Alu 0 143 4 302 256 17 43 chr12 32966140 32966257 -111316232 + L2 LINE L2 2183 2296 -1018 1893 162 0 3 chr12 32966369 32966665 -111315824 - AluJb SINE Alu -17 295 1 450 193 37 176 chr12 32966666 32966777 -111315712 + LTR41 LTR ERVL 506 631 -164 2199 105 0 19 chr12 32966777 32967092 -111315397 - AluSc SINE Alu 0 309 1 450 193 37 176 chr12 32967092 32967205 -111315284 + LTR41 LTR ERVL 631 758 -37 1807 172 45 55 chr12 32967205 32967312 -111315177 + MLT2D LTR ERVL 1 108 -306 2125 104 0 0 chr12 32967312 32967591 -111314898 - AluSg SINE Alu -9 301 23 1807 172 45 55 chr12 32967591 32967901 -111314588 + MLT2D LTR ERVL 108 414 0 2320 85 7 0 chr12 32967907 32968201 -111314288 - AluSg SINE Alu -14 296 1 450 193 37 176 chr12 32968201 32968281 -111314208 + LTR41 LTR ERVL 763 795 0 524 233 5 101 chr12 32968288 32968420 -111314069 + L2 LINE L2 2260 2370 -944 2352 105 0 6 chr12 32968420 32968734 -111313755 - AluSx SINE Alu 0 312 1 524 233 5 101 chr12 32968734 32968790 -111313699 + L2 LINE L2 2370 2430 -884 2090 144 3 0 chr12 32968868 32969174 -111313315 - AluSx SINE Alu -5 307 1 2185 92 7 0 chr12 32969188 32969461 -111313028 - AluSx SINE Alu -17 295 21 314 208 68 117 chr12 32969461 32969725 -111312764 - L1M4 LINE L1 -945 5201 4951 21 0 0 0 chr12 32970514 32970535 -111311954 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 32971097 32971118 -111311371 + AT_rich Low_complexity Low_complexity 1 21 0 890 302 80 32 chr12 32971621 32971813 -111310676 + MARNA DNA Mariner 14 195 -391 723 203 0 0 chr12 32971813 32971941 -111310548 - FLAM_A SINE Alu -2 131 4 890 302 80 32 chr12 32971941 32972275 -111310214 + MARNA DNA Mariner 195 565 -21 2096 104 3 44 chr12 32972385 32972702 -111309787 - AluSq SINE Alu -9 304 1 234 330 61 43 chr12 32972908 32973023 -111309466 + MIR3 SINE MIR 45 161 -47 2294 75 41 0 chr12 32973303 32973598 -111308891 - AluY SINE Alu -4 307 1 198 0 0 0 chr12 32975849 32975871 -111306618 + (T)n Simple_repeat Simple_repeat 1 22 0 363 265 53 63 chr12 32976542 32976731 -111305758 + MIR SINE MIR 2 188 -74 576 192 0 0 chr12 32976744 32976843 -111305646 + AluSg/x SINE Alu 207 305 -5 852 178 33 93 chr12 32977828 32977978 -111304511 + MER3 DNA MER1_type 9 144 -65 2252 102 10 0 chr12 32977978 32978273 -111304216 + AluSx SINE Alu 1 298 -14 852 178 33 93 chr12 32978273 32978336 -111304153 + MER3 DNA MER1_type 144 209 0 278 279 0 0 chr12 32978282 32978343 -111304146 - MER3 DNA MER1_type -108 101 41 * 739 263 90 47 chr12 32978346 32978363 -111304126 + L2 LINE L2 2694 2709 -604 1862 138 28 0 chr12 32978363 32978654 -111303835 + AluSx SINE Alu 1 299 -13 739 263 90 47 chr12 32978654 32979242 -111303247 + L2 LINE L2 2709 3312 -1 1045 133 0 48 chr12 32979287 32979452 -111303037 - AluJb SINE Alu -25 287 131 25 0 0 0 chr12 32979452 32979477 -111303012 + AT_rich Low_complexity Low_complexity 1 25 0 2391 106 0 0 chr12 32979481 32979782 -111302707 + AluSg SINE Alu 2 302 -8 275 272 39 19 chr12 32980518 32980621 -111301868 + MIR SINE MIR 47 151 -111 2257 103 0 7 chr12 32981310 32981611 -111300878 - AluSx SINE Alu -13 299 1 798 202 29 63 chr12 32982107 32982237 -111300252 - L1ME1 LINE L1 -24 6142 6022 2486 61 3 0 chr12 32982237 32982533 -111299956 - AluY SINE Alu -14 297 1 798 202 29 63 chr12 32982533 32982640 -111299849 - L1ME1 LINE L1 -144 6022 5913 1202 206 92 14 chr12 32982641 32982933 -111299556 - L1ME1 LINE L1 -383 5783 5469 1943 124 4 0 chr12 32982933 32983206 -111299283 + AluSq SINE Alu 1 274 -39 242 0 61 0 chr12 32983213 32983246 -111299243 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 658 210 65 84 chr12 32983464 32983678 -111298811 - MLT1D LTR MaLR -10 495 286 1945 105 0 34 chr12 32983678 32983945 -111298544 - AluSx SINE Alu -9 303 46 180 0 0 0 chr12 32983963 32983983 -111298506 + (TTG)n Simple_repeat Simple_repeat 2 21 0 742 90 0 45 chr12 32984011 32984122 -111298367 + U6 snRNA snRNA 2 107 0 1706 148 4 19 chr12 32984257 32984514 -111297975 - AluSx SINE Alu -31 281 29 567 250 65 24 chr12 32984514 32984682 -111297807 - MLT1D LTR MaLR -328 177 3 2266 114 0 3 chr12 32984887 32985193 -111297296 + AluSg SINE Alu 1 305 -5 1846 172 7 0 chr12 32985264 32985555 -111296934 + AluJb SINE Alu 1 293 -19 21 0 0 0 chr12 32986003 32986024 -111296465 + AT_rich Low_complexity Low_complexity 1 21 0 1238 164 16 0 chr12 32986039 32986222 -111296267 - AluJo SINE Alu -126 186 1 2393 63 30 0 chr12 32986771 32987070 -111295419 + AluY SINE Alu 4 311 0 2176 119 7 0 chr12 32987143 32987446 -111295043 + AluSx SINE Alu 1 305 -7 2584 37 0 7 chr12 32988289 32988588 -111293901 - AluY SINE Alu -14 297 1 645 216 0 8 chr12 32988883 32989017 -111293472 + FLAM_A SINE Alu 1 133 0 2471 69 7 7 chr12 32989886 32990192 -111292297 - AluY SINE Alu -5 306 1 488 226 0 0 chr12 32990331 32990433 -111292056 + U13 snRNA snRNA 1 102 -2 1686 181 17 0 chr12 32990527 32990820 -111291669 - AluJb SINE Alu -14 298 1 2433 81 0 3 chr12 32991480 32991788 -111290701 - AluSg SINE Alu -3 307 1 22 56 0 0 chr12 32992028 32992064 -111290425 + AT_rich Low_complexity Low_complexity 1 36 0 739 185 15 0 chr12 32992710 32992840 -111289649 + FLAM_C SINE Alu 2 133 0 26 30 0 0 chr12 32993510 32993543 -111288946 + AT_rich Low_complexity Low_complexity 1 33 0 2195 119 3 7 chr12 32994025 32994327 -111288162 + AluSx SINE Alu 1 301 -11 276 261 15 0 chr12 32994386 32994451 -111288038 - MIR3 SINE MIR -45 163 98 2108 130 0 7 chr12 32994607 32994908 -111287581 - AluSg1 SINE Alu -10 299 1 2578 59 0 7 chr12 32994978 32995285 -111287204 - AluY SINE Alu -6 305 1 2137 131 3 0 chr12 32995905 32996211 -111286278 + AluSg SINE Alu 1 307 -3 2281 119 0 0 chr12 32996213 32996515 -111285974 + AluSx SINE Alu 1 302 -10 1584 174 45 17 chr12 32996969 32997257 -111285232 + AluJo SINE Alu 1 296 -16 2592 52 0 3 chr12 32997874 32998179 -111284310 - AluY SINE Alu -7 304 1 2227 97 33 0 chr12 32999096 32999396 -111283093 + AluSp SINE Alu 1 310 -3 2008 118 13 20 chr12 32999454 32999758 -111282731 - AluSc SINE Alu -7 302 1 2169 112 3 0 chr12 33000904 33001191 -111281298 - AluSq SINE Alu -25 288 1 599 91 23 0 chr12 33001243 33001331 -111281158 - AluSg/x SINE Alu -8 301 212 994 224 112 10 chr12 33001649 33001953 -111280536 - MER46C DNA MER2_type -3 335 1 2260 118 10 0 chr12 33002842 33003146 -111279343 + AluSq SINE Alu 1 307 -6 1925 148 13 10 chr12 33003146 33003455 -111279034 + AluSx SINE Alu 1 311 -1 285 344 42 0 chr12 33003576 33003672 -111278817 + L2 LINE L2 3173 3272 0 2169 100 0 23 chr12 33003834 33004134 -111278355 - AluSq SINE Alu -20 293 1 207 299 250 20 chr12 33004347 33004551 -111277938 + L2 LINE L2 2804 3054 -218 2058 123 3 16 chr12 33004719 33005029 -111277460 - AluSx SINE Alu -4 308 3 2118 117 10 0 chr12 33005540 33005831 -111276658 - AluSx SINE Alu -18 294 1 671 277 52 60 chr12 33006139 33006244 -111276245 + L1MEc LINE L1 1058 1162 -5234 2158 105 18 0 chr12 33006244 33006529 -111275960 + AluSc SINE Alu 1 290 -19 671 277 52 60 chr12 33006529 33006577 -111275912 + L1MEc LINE L1 1162 1209 -5187 2232 131 0 0 chr12 33006577 33006889 -111275600 + AluSx SINE Alu 1 312 0 671 277 52 60 chr12 33006889 33007274 -111275215 + L1MEc LINE L1 1209 1616 -4780 335 308 10 39 chr12 33007280 33007384 -111275105 + L1MEc LINE L1 1545 1645 -4751 1608 127 68 55 chr12 33007509 33007801 -111274688 + AluJo SINE Alu 1 296 -16 1779 168 3 3 chr12 33008138 33008423 -111274066 + AluJo SINE Alu 1 285 -27 198 0 0 0 chr12 33008423 33008445 -111274044 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 312 224 0 0 chr12 33008445 33008512 -111273977 + L1MEc LINE L1 2998 3064 -3151 416 275 55 44 chr12 33008547 33008691 -111273798 + L1MEc LINE L1 3151 3292 -2923 1756 176 0 16 chr12 33008691 33008998 -111273491 + AluJb SINE Alu 1 302 -10 416 275 55 44 chr12 33008998 33009217 -111273272 + L1MEc LINE L1 3292 3518 -2697 2132 124 10 0 chr12 33009220 33009527 -111272962 + AluSx SINE Alu 1 310 -2 649 231 99 58 chr12 33009544 33009786 -111272703 + MER21B LTR ERV1 329 580 -283 1680 144 133 32 chr12 33009840 33010120 -111272369 + MSTB1 LTR MaLR 51 374 -58 1844 159 7 3 chr12 33010120 33010278 -111272211 - AluJb SINE Alu -16 296 135 2308 93 10 0 chr12 33010278 33010580 -111271909 - AluSp SINE Alu -8 305 1 1844 159 7 3 chr12 33010580 33010716 -111271773 - AluJb SINE Alu -177 135 1 1680 144 133 32 chr12 33010716 33010782 -111271707 + MSTB1 LTR MaLR 374 432 0 447 248 174 6 chr12 33010795 33010956 -111271533 + MER21B LTR ERV1 614 801 -62 2181 186 30 2 chr12 33010961 33011360 -111271129 + MER21B-int LTR ERV1 18 427 -3764 473 229 17 8 chr12 33011368 33011486 -111271003 - MER21-int LTR ERV1 -3657 534 416 1219 154 84 22 chr12 33011486 33011713 -111270776 - AluSx SINE Alu -17 295 55 456 74 0 0 chr12 33011722 33011776 -111270713 - AluSq/x SINE Alu -193 119 66 4854 241 93 70 chr12 33011779 33012470 -111270019 + MER21B-int LTR ERV1 505 1179 -3012 2107 128 0 0 chr12 33012470 33012758 -111269731 - AluSx SINE Alu -24 288 1 4854 241 93 70 chr12 33012758 33013125 -111269364 + MER21B-int LTR ERV1 1179 1536 -2655 1765 159 7 0 chr12 33013125 33013396 -111269093 - AluJb SINE Alu -31 281 9 4854 241 93 70 chr12 33013396 33014184 -111268305 + MER21B-int LTR ERV1 1536 2394 -1797 459 287 83 33 chr12 33015149 33015330 -111267159 + MIR SINE MIR 1 190 -72 1791 180 0 3 chr12 33015640 33015935 -111266554 + AluJo SINE Alu 9 302 -10 2297 112 0 6 chr12 33016008 33016322 -111266167 + AluSx SINE Alu 1 312 0 428 313 27 80 chr12 33016577 33016801 -111265688 - MIR SINE MIR -33 229 18 994 181 11 28 chr12 33016801 33016978 -111265511 + FAM SINE Alu 2 175 0 2301 98 0 3 chr12 33017113 33017408 -111265081 + AluSg SINE Alu 1 294 -16 25 31 0 0 chr12 33018222 33018254 -111264235 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 33018471 33018500 -111263989 + AT_rich Low_complexity Low_complexity 1 29 0 1552 184 21 7 chr12 33018593 33018876 -111263613 + AluJb SINE Alu 5 291 -21 300 257 37 46 chr12 33020668 33020777 -111261712 + MIR SINE MIR 32 139 -69 607 275 144 45 chr12 33021451 33021977 -111260512 - L2 LINE L2 -1 3271 2711 354 293 28 9 chr12 33022244 33022350 -111260139 + L2 LINE L2 440 547 -2767 1203 222 102 177 chr12 33022369 33022741 -111259748 + L2 LINE L2 2153 2551 -762 834 181 0 0 chr12 33022741 33022874 -111259615 - FRAM SINE Alu -8 168 36 1203 222 102 177 chr12 33022874 33023289 -111259200 + L2 LINE L2 2551 3000 -313 382 281 116 0 chr12 33023293 33023414 -111259075 + MLT1G LTR MaLR 20 154 -441 * 775 209 148 5 chr12 33023412 33023510 -111258979 - MER58A DNA MER1_type -2196 224 141 9647 91 15 28 chr12 33023510 33023609 -111258880 + HSMAR1 DNA Mariner 1 100 -1187 2196 109 3 0 chr12 33023609 33023902 -111258587 - AluSg SINE Alu -14 296 3 9647 91 15 28 chr12 33023902 33024019 -111258470 + HSMAR1 DNA Mariner 100 217 -1070 2182 100 40 3 chr12 33024019 33024320 -111258169 - AluSx SINE Alu 0 312 1 9647 91 15 28 chr12 33024320 33024688 -111257801 + HSMAR1 DNA Mariner 217 588 -699 1955 122 14 4 chr12 33024688 33025005 -111257484 + AluSx SINE Alu 1 320 0 9647 91 15 28 chr12 33025005 33025719 -111256770 + HSMAR1 DNA Mariner 588 1285 -2 775 209 148 5 chr12 33025719 33025816 -111256673 - MER58A DNA MER1_type -2279 141 1 560 280 139 15 chr12 33025825 33025903 -111256586 + MLT1G LTR MaLR 110 177 -418 234 0 0 0 chr12 33025903 33025929 -111256560 + (TC)n Simple_repeat Simple_repeat 2 27 0 560 280 139 15 chr12 33025929 33026219 -111256270 + MLT1G LTR MaLR 177 547 -48 830 261 22 35 chr12 33026219 33026242 -111256247 + MER58A DNA MER1_type 1 23 -2397 1397 216 18 85 chr12 33026242 33026631 -111255858 + MLT1A1 LTR MaLR 1 363 -2 830 261 22 35 chr12 33026631 33026833 -111255656 + MER58A DNA MER1_type 23 223 -1 220 364 30 10 chr12 33026893 33026992 -111255497 + L2 LINE L2 2995 3095 -218 1910 150 6 13 chr12 33027582 33027896 -111254593 + AluSx SINE Alu 1 312 0 189 174 304 0 chr12 33027999 33028045 -111254444 + L2 LINE L2 3213 3272 0 1877 135 3 63 chr12 33028121 33028439 -111254050 - AluSx SINE Alu -11 301 3 241 328 0 0 chr12 33029252 33029310 -111253179 + Tigger3(Golem) DNA MER2_type 1 58 -2971 764 144 23 45 chr12 33029312 33029444 -111253045 + Tigger3(Golem) DNA MER2_type 2877 3005 -24 207 161 0 0 chr12 33029444 33029475 -111253014 + polypyrimidine Low_complexity Low_complexity 2 32 0 305 382 27 9 chr12 33029476 33029586 -111252903 - L2 LINE L2 -25 3247 3136 434 325 149 35 chr12 33029752 33030403 -111252086 - L2 LINE L2 -1 3312 2291 1855 169 3 0 chr12 33030496 33030792 -111251697 + AluJb SINE Alu 1 297 -15 1569 136 21 4 chr12 33031379 33031622 -111250867 + AluSx SINE Alu 43 289 -23 237 117 50 17 chr12 33031684 33031744 -111250745 + GA-rich Low_complexity Low_complexity 4 65 0 689 205 0 8 chr12 33032589 33032716 -111249773 - AluJo SINE Alu -102 210 85 204 320 97 19 chr12 33033316 33033419 -111249070 + MIR3 SINE MIR 3 113 -95 1023 104 0 0 chr12 33033578 33033712 -111248777 + AluSq/x SINE Alu 1 134 -178 2028 139 7 7 chr12 33033713 33034022 -111248467 + AluSx SINE Alu 1 309 -3 634 137 8 16 chr12 33034291 33034415 -111248074 + (TCTA)n Simple_repeat Simple_repeat 1 123 0 653 228 0 0 chr12 33034415 33034529 -111247960 - FLAM_A SINE Alu -23 119 6 4549 103 44 8 chr12 33034570 33035182 -111247307 + MER51A LTR ERV1 1 634 0 317 285 16 41 chr12 33035449 33035535 -111246954 + MIR SINE MIR 72 156 -106 2507 81 10 0 chr12 33035535 33035844 -111246645 - AluSx SINE Alu 0 312 1 317 285 16 41 chr12 33035844 33035880 -111246609 + MIR SINE MIR 156 191 -71 868 137 0 0 chr12 33036750 33036867 -111245622 + FLAM_C SINE Alu 1 117 -26 29 0 0 0 chr12 33036875 33036904 -111245585 + AT_rich Low_complexity Low_complexity 1 29 0 597 102 204 0 chr12 33037825 33037913 -111244576 + AluSg SINE Alu 9 114 -196 560 154 11 33 chr12 33037929 33038111 -111244378 + G-rich Low_complexity Low_complexity 1 178 0 183 80 0 0 chr12 33038126 33038151 -111244338 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 2255 124 0 0 chr12 33038835 33039141 -111243348 + AluSx SINE Alu 1 306 -6 1135 132 198 5 chr12 33040153 33040350 -111242139 - MER46A DNA MER2_type 0 236 2 476 164 14 0 chr12 33040420 33040493 -111241996 - MER46A DNA MER2_type -161 75 2 321 190 0 17 chr12 33040446 33040504 -111241985 + MER46A DNA MER2_type 97 153 -83 * 1983 159 7 0 chr12 33040543 33040838 -111241651 + AluSx SINE Alu 1 297 -15 968 212 11 0 chr12 33040848 33041027 -111241462 + L1MC/D LINE L1 5444 5624 -2161 * 1730 146 81 68 chr12 33041010 33041218 -111241271 + L1MC3 LINE L1 7339 7543 -242 2818 116 11 3 chr12 33041218 33041590 -111240899 + THE1C LTR MaLR 1 375 0 1730 146 81 68 chr12 33041590 33041626 -111240863 + L1MC3 LINE L1 7543 7577 -208 2274 116 3 0 chr12 33041626 33041937 -111240552 + AluSq SINE Alu 1 312 -1 1730 146 81 68 chr12 33041937 33042101 -111240388 + L1MC3 LINE L1 7577 7753 -32 2383 86 7 0 chr12 33042170 33042473 -111240016 + AluSg SINE Alu 2 306 -4 1831 153 32 0 chr12 33043412 33043693 -111238796 + AluJb SINE Alu 1 290 -22 453 267 184 24 chr12 33044929 33045209 -111237280 + MLT1J1 LTR MaLR 99 428 -18 2107 128 10 3 chr12 33045375 33045672 -111236817 - AluSx SINE Alu -13 299 1 198 0 0 0 chr12 33045955 33045977 -111236512 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1670 171 11 18 chr12 33045978 33046264 -111236225 - AluJb SINE Alu -23 289 6 29 0 0 0 chr12 33046410 33046439 -111236050 + AT_rich Low_complexity Low_complexity 1 29 0 831 69 0 0 chr12 33046439 33046540 -111235949 - HY3 scRNA scRNA 0 101 1 1586 273 83 57 chr12 33046615 33047315 -111235174 - MER21B LTR ERV1 -129 734 17 936 210 194 24 chr12 33047318 33047570 -111234919 - AluJo SINE Alu -7 295 1 207 299 37 52 chr12 33049274 33049408 -111233081 + L2 LINE L2 2264 2395 -919 359 178 0 0 chr12 33049469 33049528 -111232961 + Alu SINE Alu 1 53 -255 667 200 82 7 chr12 33049558 33049693 -111232796 + FRAM SINE Alu 20 164 -12 341 186 0 29 chr12 33049700 33049770 -111232719 + MLT1G1 LTR MaLR 486 593 -2 508 256 111 56 chr12 33049772 33050006 -111232483 - L2 LINE L2 -71 3242 2996 754 241 21 21 chr12 33050248 33050435 -111232054 - MLT1E2 LTR MaLR 0 654 468 1132 148 0 0 chr12 33050450 33050619 -111231870 - AluSg/x SINE Alu -10 300 132 1137 224 111 28 chr12 33050619 33051028 -111231461 - MLT1E2 LTR MaLR -185 439 1 1989 125 3 30 chr12 33051085 33051388 -111231101 + AluJo SINE Alu 1 295 -17 229 230 176 54 chr12 33051821 33051895 -111230594 + L2 LINE L2 3190 3272 0 22 56 0 0 chr12 33052004 33052040 -111230449 + AT_rich Low_complexity Low_complexity 1 36 0 2330 83 24 0 chr12 33052057 33052347 -111230142 - AluSg SINE Alu -8 302 6 1578 180 0 49 chr12 33052361 33052666 -111229823 - AluJo SINE Alu -22 290 1 3786 136 156 113 chr12 33052893 33053466 -111229023 - L1MC3 LINE L1 0 7785 7238 231 319 0 32 chr12 33053466 33053560 -111228929 - MLT1F1 LTR MaLR -442 125 35 3786 136 156 113 chr12 33053560 33053973 -111228516 - L1MC3 LINE L1 -547 7238 6656 1888 149 0 33 chr12 33053973 33054275 -111228214 - AluJo SINE Alu -14 298 7 807 224 0 7 chr12 33054368 33054520 -111227969 + Tigger3(Golem) DNA MER2_type 2866 3016 -13 2104 122 3 23 chr12 33054669 33054972 -111227517 + AluSx SINE Alu 1 297 -15 1535 174 60 28 chr12 33054987 33055269 -111227220 + AluJo SINE Alu 3 293 -19 935 187 0 0 chr12 33055294 33055444 -111227045 + FRAM SINE Alu 1 150 -16 21 82 0 0 chr12 33055473 33055522 -111226967 + AT_rich Low_complexity Low_complexity 1 49 0 1689 165 31 21 chr12 33056338 33056629 -111225860 + AluJb SINE Alu 5 298 -14 932 179 0 34 chr12 33056912 33057091 -111225398 + AluJb SINE Alu 129 301 -11 294 267 91 79 chr12 33058386 33058551 -111223938 - MIR3 SINE MIR -11 197 31 995 108 6 18 chr12 33059911 33060077 -111222412 - L1MB7 LINE L1 -8 6176 6013 832 196 139 18 chr12 33060624 33060676 -111221813 - MER33 DNA MER1_type -2273 312 268 2134 99 3 7 chr12 33060676 33060959 -111221530 - AluSc SINE Alu -16 293 12 832 196 139 18 chr12 33060959 33060974 -111221515 - MER33 DNA MER1_type -2317 268 256 219 36 0 0 chr12 33060974 33061002 -111221487 + (CAA)n Simple_repeat Simple_repeat 2 29 0 832 196 139 18 chr12 33061002 33061222 -111221267 - MER33 DNA MER1_type -2329 256 1 748 159 0 36 chr12 33061443 33061581 -111220908 - FLAM_A SINE Alu 0 133 1 381 353 160 12 chr12 33061888 33062347 -111220142 + L2 LINE L2 2565 3087 -185 1398 161 43 18 chr12 33062588 33062867 -111219622 - AluJb SINE Alu -26 286 1 2071 143 0 16 chr12 33063179 33063493 -111218996 - AluSx SINE Alu -3 309 1 534 179 0 0 chr12 33063750 33063845 -111218644 + L1MB5 LINE L1 6080 6174 0 207 0 0 0 chr12 33064170 33064193 -111218296 + (T)n Simple_repeat Simple_repeat 1 23 0 418 235 91 30 chr12 33064350 33064482 -111218007 + MLT1H LTR MaLR 101 240 -309 2088 106 0 11 chr12 33064500 33064782 -111217707 + AluSx SINE Alu 1 279 -33 198 174 0 0 chr12 33064816 33064862 -111217627 + A-rich Low_complexity Low_complexity 1 46 0 1598 233 119 8 chr12 33065064 33065661 -111216828 + L1MD3 LINE L1 5343 6005 -1990 * 2087 173 69 12 chr12 33065321 33065829 -111216660 + L1MB8 LINE L1 5642 6178 0 1641 186 3 10 chr12 33065839 33066130 -111216359 + AluJb SINE Alu 1 289 -23 1612 144 18 0 chr12 33066726 33067003 -111215486 + L1MD3 LINE L1 7697 7978 -17 949 275 153 43 chr12 33067064 33067627 -111214862 - L2 LINE L2 0 3313 2690 2340 95 0 0 chr12 33067627 33067921 -111214568 + AluSg SINE Alu 1 294 -16 949 275 153 43 chr12 33067921 33067951 -111214538 - L2 LINE L2 -623 2690 2665 545 242 21 48 chr12 33067956 33068193 -111214296 + L1MC4 LINE L1 7363 7614 -207 1244 216 145 28 chr12 33068193 33068620 -111213869 - MLT1D LTR MaLR 0 505 29 1159 262 92 52 chr12 33068620 33069009 -111213480 - L2 LINE L2 -701 2613 2204 2283 93 6 6 chr12 33069009 33069321 -111213168 + AluSq SINE Alu 1 312 -1 1159 262 92 52 chr12 33069321 33069354 -111213135 - L2 LINE L2 -1110 2204 2174 891 114 76 0 chr12 33069683 33069814 -111212675 + AluJb SINE Alu 1 141 -171 47 0 0 0 chr12 33069831 33069878 -111212611 + AT_rich Low_complexity Low_complexity 1 47 0 2391 86 0 0 chr12 33070219 33070521 -111211968 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr12 33070739 33070763 -111211726 + AT_rich Low_complexity Low_complexity 1 24 0 2261 99 13 0 chr12 33071321 33071624 -111210865 - AluSx SINE Alu -5 307 1 234 233 45 68 chr12 33072131 33072264 -111210225 - L2 LINE L2 -67 3246 3117 349 332 103 49 chr12 33072620 33072969 -111209520 - L2 LINE L2 -609 2705 2338 390 242 96 35 chr12 33073310 33073508 -111208981 - MER2 DNA MER2_type 0 345 136 1833 104 0 69 chr12 33074285 33074573 -111207916 - AluSx SINE Alu -9 303 36 1265 126 0 0 chr12 33075052 33075227 -111207262 + AluSg/x SINE Alu 131 305 -5 13429 134 40 34 chr12 33075425 33075534 -111206955 + L1MA3 LINE L1 1666 1773 -5951 330 87 0 0 chr12 33075534 33075580 -111206909 + (CA)n Simple_repeat Simple_repeat 2 47 0 13429 134 40 34 chr12 33075580 33075970 -111206519 + L1MA3 LINE L1 1773 2159 -5565 2432 135 41 12 chr12 33075970 33076386 -111206103 + MSTA LTR MaLR 1 428 0 13429 134 40 34 chr12 33076386 33078709 -111203780 + L1MA3 LINE L1 2159 4468 -3256 2206 125 0 6 chr12 33078709 33079020 -111203469 + AluSx SINE Alu 1 309 -3 13429 134 40 34 chr12 33079020 33080496 -111201993 + L1MA3 LINE L1 4468 5934 -1790 1936 149 0 0 chr12 33080496 33080778 -111201711 + AluSx SINE Alu 1 282 -30 13429 134 40 34 chr12 33080778 33082130 -111200359 + L1MA3 LINE L1 5934 7371 -353 2380 90 0 7 chr12 33082130 33082430 -111200059 + AluSg SINE Alu 1 298 -12 13429 134 40 34 chr12 33082430 33082785 -111199704 + L1MA3 LINE L1 7371 7723 -1 1672 174 3 7 chr12 33082802 33083084 -111199405 + AluJb SINE Alu 5 285 -27 1105 151 0 49 chr12 33083153 33083338 -111199151 + AluJb SINE Alu 113 288 -24 2047 121 21 0 chr12 33084012 33084292 -111198197 + AluSx SINE Alu 1 286 -26 21 104 0 0 chr12 33084302 33084379 -111198110 + AT_rich Low_complexity Low_complexity 1 77 0 1869 162 0 10 chr12 33084413 33084709 -111197780 - AluJb SINE Alu -19 293 1 331 248 51 29 chr12 33084736 33084873 -111197616 + L1ME4a LINE L1 5093 5232 -914 326 239 44 57 chr12 33084876 33085151 -111197338 + L1MC5 LINE L1 7261 7498 -463 1559 136 31 8 chr12 33085358 33085616 -111196873 - L1PA16 LINE L1 -2 6164 5901 388 268 106 68 chr12 33085646 33085796 -111196693 + L1ME4a LINE L1 5751 5894 -227 1735 160 30 20 chr12 33085796 33086096 -111196393 + AluJb SINE Alu 1 303 -9 388 268 106 68 chr12 33086096 33086266 -111196223 + L1ME4a LINE L1 5894 6083 -38 2266 94 3 0 chr12 33086529 33086816 -111195673 + AluSx SINE Alu 1 288 -24 364 229 0 0 chr12 33087344 33087427 -111195062 - L1MC5 LINE L1 -72 7889 7807 2136 117 21 0 chr12 33087528 33087819 -111194670 - AluSg SINE Alu -13 297 1 2199 107 3 3 chr12 33087832 33088130 -111194359 - AluSq SINE Alu -15 298 1 25 0 0 0 chr12 33088177 33088202 -111194287 + AT_rich Low_complexity Low_complexity 1 25 0 1748 174 33 10 chr12 33088234 33088539 -111193950 + AluJb SINE Alu 1 312 0 1586 189 3 20 chr12 33089023 33089324 -111193165 - AluJo SINE Alu -16 296 1 22 70 0 0 chr12 33089509 33089552 -111192937 + AT_rich Low_complexity Low_complexity 1 43 0 1348 108 0 4 chr12 33089653 33089664 -111192825 - L1P4 LINE L1 -391 5777 5767 2250 87 10 6 chr12 33089664 33089975 -111192514 - L1PA10 LINE L1 -4 6164 5853 1348 108 0 4 chr12 33089975 33090178 -111192311 - L1P4 LINE L1 -401 5767 5570 42502 33 5 2 chr12 33090191 33096330 -111186159 - L1PA4 LINE L1 -3 6152 1 2052 139 10 0 chr12 33096331 33096626 -111185863 - AluSx SINE Alu -14 298 1 426 107 0 0 chr12 33096721 33096777 -111185712 + FLAM SINE Alu 63 118 -25 21 0 0 0 chr12 33096783 33096804 -111185685 + AT_rich Low_complexity Low_complexity 1 21 0 453 296 36 0 chr12 33096947 33097143 -111185346 + L1ME LINE L1 5572 5774 -347 258 315 34 0 chr12 33097333 33097482 -111185007 + HAL1b LINE L1 1193 1346 -2 1592 131 0 13 chr12 33097502 33097731 -111184758 - AluJb SINE Alu -11 301 76 207 0 0 0 chr12 33097939 33097962 -111184527 + (A)n Simple_repeat Simple_repeat 1 23 0 742 167 97 14 chr12 33098041 33098185 -111184304 + FRAM SINE Alu 1 156 -10 2486 235 92 47 chr12 33100117 33101054 -111181435 + L2 LINE L2 2111 3088 -225 736 191 0 0 chr12 33101467 33101582 -111180907 + FLAM_A SINE Alu 1 115 -18 274 193 70 0 chr12 33101836 33101893 -111180596 - L2 LINE L2 -4 3268 3208 286 236 11 45 chr12 33102037 33102126 -111180363 - L2 LINE L2 -2 3311 3226 22 0 0 0 chr12 33102429 33102451 -111180038 + AT_rich Low_complexity Low_complexity 1 22 0 1981 105 3 18 chr12 33102452 33102738 -111179751 + AluSp SINE Alu 1 282 -31 252 59 0 0 chr12 33102742 33102776 -111179713 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr12 33103774 33103798 -111178691 + AT_rich Low_complexity Low_complexity 1 24 0 2005 161 0 3 chr12 33103959 33104258 -111178231 + AluSx SINE Alu 1 298 -14 1818 145 3 0 chr12 33104686 33105012 -111177477 - AluJb SINE Alu 0 327 1 356 164 16 0 chr12 33105157 33105218 -111177271 + MLT1F LTR MaLR 1 62 -480 1257 183 62 5 chr12 33105249 33105473 -111177016 + AluJb SINE Alu 1 237 -75 287 258 106 68 chr12 33105822 33105954 -111176535 + MIR SINE MIR 15 146 -62 1755 172 0 23 chr12 33105984 33106287 -111176202 + AluJb SINE Alu 1 296 -16 989 201 0 0 chr12 33106298 33106462 -111176027 + FAM SINE Alu 1 164 -11 297 0 0 0 chr12 33106463 33106496 -111175993 + (TG)n Simple_repeat Simple_repeat 2 34 0 698 167 0 0 chr12 33106612 33106732 -111175757 + FLAM_C SINE Alu 2 121 -22 26 30 0 0 chr12 33106732 33106765 -111175724 + AT_rich Low_complexity Low_complexity 1 33 0 501 196 0 0 chr12 33106997 33107089 -111175400 + AluSg/x SINE Alu 130 221 -91 603 152 0 19 chr12 33107157 33107262 -111175227 + MER65A LTR ERV1 343 445 0 1097 163 0 0 chr12 33107292 33107458 -111175031 + AluJb SINE Alu 133 298 -14 675 79 0 0 chr12 33107582 33107671 -111174818 + AluSg/x SINE Alu 211 299 -10 289 339 0 16 chr12 33107671 33107798 -111174691 + L2 LINE L2 2623 2747 -567 941 161 0 25 chr12 33107798 33107959 -111174530 + FRAM SINE Alu 10 166 -10 762 127 8 45 chr12 33107993 33108127 -111174362 - FLAM_C SINE Alu -13 130 2 1889 132 132 0 chr12 33108186 33108505 -111173984 + MER46B DNA MER2_type 1 236 0 682 187 8 37 chr12 33109043 33109177 -111173312 - FLAM_A SINE Alu -3 130 1 1811 159 20 10 chr12 33109185 33109487 -111173002 - AluJb SINE Alu -7 305 1 1888 158 3 14 chr12 33109651 33109942 -111172547 + AluSx SINE Alu 1 288 -24 2223 107 0 19 chr12 33110037 33110354 -111172135 + AluY SINE Alu 1 311 0 670 213 15 84 chr12 33110848 33111121 -111171368 + LTR34 LTR ERV1 446 699 0 236 261 0 45 chr12 33111121 33111209 -111171280 + L1MA9 LINE L1 6229 6312 0 304 337 32 21 chr12 33111898 33112088 -111170401 + L2 LINE L2 2550 2741 -573 464 269 103 17 chr12 33112141 33112316 -111170173 - MIR SINE MIR -2 260 71 2398 98 0 0 chr12 33112727 33113032 -111169457 + AluSg SINE Alu 1 305 -5 25 0 0 0 chr12 33114142 33114167 -111168322 + AT_rich Low_complexity Low_complexity 1 25 0 289 250 0 0 chr12 33114167 33114235 -111168254 + L2 LINE L2 3178 3245 -27 26 74 0 0 chr12 33114395 33114449 -111168040 + GC_rich Low_complexity Low_complexity 1 54 0 341 233 187 99 chr12 33115023 33115082 -111167407 + MER102b DNA MER1_type 56 108 -1320 2311 65 16 56 chr12 33115082 33115404 -111167085 + AluSx SINE Alu 1 309 -3 341 233 187 99 chr12 33115404 33115606 -111166883 + MER102b DNA MER1_type 108 340 -1 201 319 0 0 chr12 33116051 33116098 -111166391 + L2 LINE L2 3162 3208 -64 * 253 150 33 33 chr12 33116091 33116151 -111166338 + L2 LINE L2 3179 3238 -75 1086 181 0 46 chr12 33116261 33116477 -111166012 - MER2 DNA MER2_type -139 206 1 2147 80 62 3 chr12 33116685 33116974 -111165515 - AluSq SINE Alu -7 306 1 338 136 150 23 chr12 33117545 33117679 -111164810 + AluJb SINE Alu 114 298 -4 603 167 125 17 chr12 33117724 33117844 -111164645 - FLAM_C SINE Alu 0 133 1 600 189 0 9 chr12 33118203 33118309 -111164180 + AluJo/FLAM SINE Alu 21 125 -187 2406 75 0 0 chr12 33118312 33118606 -111163883 - AluSg SINE Alu -16 294 1 1129 69 0 0 chr12 33118609 33118740 -111163749 - AluSq/x SINE Alu -181 132 2 253 83 125 42 chr12 33118740 33118788 -111163701 + Charlie8 DNA MER1_type 207 258 -2159 645 229 66 6 chr12 33118806 33118972 -111163517 - MER51D LTR ERV1 -21 636 461 609 183 131 22 chr12 33119682 33119819 -111162670 - LTR34 LTR ERV1 0 699 548 2321 93 10 3 chr12 33119819 33120130 -111162359 - AluSq SINE Alu 0 313 1 1968 155 3 3 chr12 33120143 33120453 -111162036 - AluJb SINE Alu -2 310 1 1109 102 0 7 chr12 33120726 33120873 -111161616 - AluSq/x SINE Alu -164 148 3 566 226 9 0 chr12 33120875 33120990 -111161499 - MLT2B1 LTR ERVL -404 116 1 1576 146 3 93 chr12 33121185 33121506 -111160983 - AluJb SINE Alu -20 292 1 216 0 0 0 chr12 33121506 33121530 -111160959 + (T)n Simple_repeat Simple_repeat 1 24 0 442 238 79 38 chr12 33121574 33121810 -111160679 + MIR SINE MIR 9 248 -14 1884 153 0 0 chr12 33122435 33122750 -111159739 - AluSx SINE Alu 0 315 1 1273 189 5 0 chr12 33122750 33122972 -111159517 - AluJb SINE Alu -5 307 85 632 171 23 54 chr12 33122972 33123101 -111159388 - AluJo SINE Alu -177 135 11 533 267 39 17 chr12 33123512 33123692 -111158797 + MIR SINE MIR 14 197 -65 2123 105 0 10 chr12 33123704 33124000 -111158489 + AluSx SINE Alu 20 312 0 2001 157 6 14 chr12 33124001 33124346 -111158143 + L1MB8 LINE L1 5488 5829 -355 756 171 171 0 chr12 33124346 33124498 -111157991 + MER2 DNA MER2_type 1 178 -167 2303 93 0 35 chr12 33124500 33124693 -111157796 - AluSg SINE Alu -11 299 120 2500 68 7 0 chr12 33124693 33125000 -111157489 - AluY SINE Alu -2 309 1 2303 93 0 35 chr12 33125000 33125116 -111157373 - AluSg SINE Alu -190 120 1 1103 105 149 6 chr12 33125126 33125307 -111157182 - AluSg/x SINE Alu -21 289 83 848 126 86 26 chr12 33125307 33125458 -111157031 + MER2 DNA MER2_type 186 345 0 418 151 116 0 chr12 33125458 33125544 -111156945 + L1MB8 LINE L1 5828 5923 -255 1387 125 37 148 chr12 33125544 33125895 -111156594 + Tigger1 DNA MER2_type 1 312 -2106 1992 146 44 0 chr12 33125895 33126190 -111156299 - AluSx SINE Alu -4 308 1 3664 109 43 6 chr12 33126194 33126728 -111155761 + MER41A LTR ERV1 1 554 0 434 242 23 45 chr12 33126732 33126864 -111155625 - L2 LINE L2 -570 2744 2616 542 231 30 59 chr12 33126865 33126971 -111155518 + MER34 LTR ERV1 1 102 -440 2425 135 94 2 chr12 33126971 33127385 -111155104 - LTR47A LTR ERVL 0 452 1 542 231 30 59 chr12 33127385 33127447 -111155042 + MER34 LTR ERV1 102 164 -378 2270 77 0 68 chr12 33127447 33127771 -111154718 - AluSx SINE Alu -10 302 1 4179 123 3 10 chr12 33127898 33128514 -111153975 + LTR9 LTR ERV1 1 612 0 746 231 57 57 chr12 33128522 33128803 -111153686 + MER34 LTR ERV1 257 537 -5 434 242 97 0 chr12 33128807 33128931 -111153558 - L2 LINE L2 -696 2618 2483 2206 100 3 3 chr12 33129066 33129366 -111153123 + AluSx SINE Alu 1 300 -12 2297 97 3 3 chr12 33129805 33130113 -111152376 + AluSx SINE Alu 1 308 -4 260 224 0 0 chr12 33130178 33130227 -111152262 + L1MA10 LINE L1 6199 6247 -87 1182 186 71 108 chr12 33130227 33130636 -111151853 + LTR34 LTR ERV1 1 394 -305 2210 100 21 0 chr12 33130957 33131248 -111151241 + AluSx SINE Alu 1 297 -15 535 292 162 23 chr12 33132326 33132634 -111149855 - MARNA DNA Mariner -28 558 208 2254 210 74 67 chr12 33133246 33133421 -111149068 + MER21B LTR ERV1 101 273 -590 2241 116 0 19 chr12 33133421 33133739 -111148750 + AluSx SINE Alu 1 312 0 2254 210 74 67 chr12 33133739 33134269 -111148220 + MER21B LTR ERV1 273 811 -52 22 0 0 0 chr12 33134459 33134481 -111148008 + AT_rich Low_complexity Low_complexity 1 22 0 1295 170 5 0 chr12 33134481 33134693 -111147796 + AluJb SINE Alu 87 299 -13 2194 94 3 38 chr12 33134981 33135300 -111147189 - AluSg SINE Alu 0 310 3 788 164 7 14 chr12 33135411 33135551 -111146938 + FLAM_C SINE Alu 1 139 -4 485 223 7 4 chr12 33135671 33135799 -111146690 + MSTC LTR MaLR 220 379 -48 2416 91 0 0 chr12 33135804 33136100 -111146389 + AluSq SINE Alu 1 296 -17 890 173 45 45 chr12 33136164 33136366 -111146123 - AluJo SINE Alu -13 299 98 1148 106 33 11 chr12 33136569 33136749 -111145740 - L1MA4 LINE L1 -300 6000 5817 369 93 0 0 chr12 33136749 33136803 -111145686 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 726 173 0 0 chr12 33136803 33136913 -111145576 - AluJb SINE Alu -30 282 173 2256 125 0 0 chr12 33136949 33137253 -111145236 - AluSg SINE Alu -5 305 2 1508 99 15 73 chr12 33137254 33137370 -111145119 - L1MA4 LINE L1 -471 5829 5708 2275 110 0 0 chr12 33137370 33137662 -111144827 - AluSc SINE Alu -17 292 1 1508 99 15 73 chr12 33137662 33137817 -111144672 - L1MA4 LINE L1 -592 5708 5574 299 247 43 0 chr12 33137925 33138018 -111144471 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 1953 150 3 26 chr12 33138267 33138574 -111143915 + AluJb SINE Alu 1 300 -12 38 68 0 0 chr12 33138682 33138755 -111143734 + AT_rich Low_complexity Low_complexity 1 73 0 2006 150 3 3 chr12 33139035 33139335 -111143154 - AluJb SINE Alu -12 300 1 255 259 36 22 chr12 33140698 33140837 -111141652 - L1M4 LINE L1 -3704 2442 2302 * 1661 272 41 21 chr12 33140824 33141660 -111140829 - L1ME3 LINE L1 -274 5888 5035 3131 94 22 20 chr12 33141757 33142214 -111140275 - L1PA10 LINE L1 -106 6062 5605 1978 46 0 0 chr12 33142413 33142652 -111139837 - L1PA8 LINE L1 -1 6171 5933 4099 98 11 14 chr12 33142652 33143438 -111139051 - L1P3 LINE L1 -4523 1938 1153 302 237 114 9 chr12 33143448 33143562 -111138927 - L1P3 LINE L1 -5660 801 676 2176 98 0 7 chr12 33143691 33144000 -111138489 - AluSq SINE Alu 0 307 1 23 0 0 0 chr12 33144654 33144677 -111137812 + AT_rich Low_complexity Low_complexity 1 23 0 2288 116 0 0 chr12 33144726 33145027 -111137462 - AluSq SINE Alu -12 301 1 1396 143 0 14 chr12 33145255 33145471 -111137018 - AluJo SINE Alu -95 217 5 352 226 24 0 chr12 33145590 33145674 -111136815 + MER103 DNA DNA 17 102 -64 1858 189 54 76 chr12 33145752 33146303 -111136186 - LTR55 LTR ERV -2 546 8 2133 139 3 0 chr12 33146459 33146760 -111135729 - AluSx SINE Alu -10 302 1 240 241 74 0 chr12 33146826 33146880 -111135609 + Charlie1 DNA MER1_type 1 58 -2703 * 2608 171 44 50 chr12 33146877 33146941 -111135548 + Charlie1 DNA MER1_type 1748 1811 -950 2438 96 30 30 chr12 33146941 33147305 -111135184 + THE1B LTR MaLR 1 364 0 2608 171 44 50 chr12 33147305 33147825 -111134664 + Charlie1 DNA MER1_type 1811 2329 -432 362 141 153 129 chr12 33147859 33147973 -111134516 + Charlie1 DNA MER1_type 2582 2703 -58 2361 84 0 3 chr12 33147973 33148271 -111134218 - AluY SINE Alu -14 297 1 362 141 153 129 chr12 33148271 33148326 -111134163 + Charlie1 DNA MER1_type 2703 2755 -6 1337 196 14 17 chr12 33148532 33148828 -111133661 - AluSx SINE Alu -17 295 1 1200 121 79 47 chr12 33149231 33149404 -111133085 - Tigger4(Zombi) DNA MER2_type 0 2731 2548 1556 190 0 70 chr12 33149404 33149584 -111132905 - AluJb SINE Alu -4 308 160 1948 155 3 7 chr12 33149584 33149888 -111132601 - AluSx SINE Alu -9 303 1 1556 190 0 70 chr12 33149888 33150038 -111132451 - AluJb SINE Alu -152 160 1 1200 121 79 47 chr12 33150038 33150079 -111132410 - Tigger4(Zombi) DNA MER2_type -183 2548 2510 1521 207 8 4 chr12 33150081 33150347 -111132142 - Tigger4(Zombi) DNA MER2_type -2463 268 2 234 295 39 0 chr12 33150349 33150427 -111132062 - MLT1G LTR MaLR -58 491 411 555 192 186 21 chr12 33150526 33150796 -111131693 - MLT1G LTR MaLR -284 306 1 2376 101 0 0 chr12 33150804 33151101 -111131388 - AluSx SINE Alu -15 297 1 329 295 182 26 chr12 33151138 33151484 -111131005 + L1ME4a LINE L1 5656 6055 -66 2519 24 41 0 chr12 33151802 33152093 -111130396 + AluY SINE Alu 1 303 -8 904 97 0 0 chr12 33152554 33152667 -111129822 - AluSg/x SINE Alu -18 292 180 4161 38 2 0 chr12 33152768 33153275 -111129214 + L1P LINE L1 4289 4796 -1350 359 254 87 55 chr12 33153310 33153779 -111128710 - L1M4 LINE L1 -2974 3172 2689 1915 135 10 3 chr12 33154075 33154371 -111128118 + AluSq SINE Alu 1 298 -15 603 136 0 93 chr12 33154409 33154517 -111127972 + U6 snRNA snRNA 1 99 -8 1946 151 3 3 chr12 33154517 33154816 -111127673 - AluJb SINE Alu -13 299 1 181 346 50 57 chr12 33154882 33154950 -111127539 + MER5A DNA MER1_type 6 73 -116 2067 86 65 3 chr12 33154950 33155240 -111127249 + AluY SINE Alu 2 309 -2 181 346 50 57 chr12 33155240 33155330 -111127159 + MER5A DNA MER1_type 73 163 -26 556 190 36 0 chr12 33155364 33155501 -111126988 - L1MA9 LINE L1 -1 6311 6170 2311 72 4 0 chr12 33155539 33155816 -111126673 + AluSp SINE Alu 1 278 -35 2506 73 3 0 chr12 33155818 33156121 -111126368 + AluSx SINE Alu 1 304 -8 228 54 0 0 chr12 33156121 33156158 -111126331 + AluSp SINE Alu 264 300 -3 2303 92 31 0 chr12 33156339 33156631 -111125858 + AluSp SINE Alu 1 301 -12 603 240 166 74 chr12 33157550 33157875 -111124614 + L1ME LINE L1 5390 5744 -377 307 236 171 21 chr12 33158270 33158410 -111124079 + MIR3 SINE MIR 17 177 -31 212 182 0 0 chr12 33159672 33159716 -111122773 - MIR SINE MIR -10 252 209 2154 118 20 0 chr12 33159727 33160033 -111122456 + AluSx SINE Alu 1 312 0 2048 125 7 7 chr12 33160065 33160370 -111122119 - AluSq SINE Alu -8 305 1 2193 78 3 14 chr12 33160373 33160657 -111121832 - AluSq SINE Alu -12 301 21 307 218 43 146 chr12 33160657 33160937 -111121552 - L1M4 LINE L1 -945 5201 4951 21 0 0 0 chr12 33161726 33161747 -111120742 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 33162309 33162330 -111120159 + AT_rich Low_complexity Low_complexity 1 21 0 890 302 80 32 chr12 33162833 33163025 -111119464 + MARNA DNA Mariner 14 195 -391 723 203 0 0 chr12 33163025 33163153 -111119336 - FLAM_A SINE Alu -2 131 4 890 302 80 32 chr12 33163153 33163487 -111119002 + MARNA DNA Mariner 195 565 -21 2129 104 3 41 chr12 33163597 33163913 -111118576 - AluSq SINE Alu -9 304 1 234 330 61 43 chr12 33164119 33164234 -111118255 + MIR3 SINE MIR 45 161 -47 2294 75 41 0 chr12 33164514 33164809 -111117680 - AluY SINE Alu -4 307 1 180 0 0 0 chr12 33167061 33167081 -111115408 + (T)n Simple_repeat Simple_repeat 1 20 0 337 258 60 66 chr12 33167762 33167929 -111114560 + MIR SINE MIR 2 167 -95 576 192 0 0 chr12 33167976 33168075 -111114414 + AluSg/x SINE Alu 209 307 -5 852 178 33 93 chr12 33169060 33169210 -111113279 + MER3 DNA MER1_type 9 144 -65 2264 98 10 0 chr12 33169210 33169505 -111112984 + AluSx SINE Alu 1 298 -14 852 178 33 93 chr12 33169505 33169568 -111112921 + MER3 DNA MER1_type 144 209 0 278 279 0 0 chr12 33169514 33169575 -111112914 - MER3 DNA MER1_type -108 101 41 * 220 233 0 27 chr12 33169578 33169595 -111112894 + L2 LINE L2 2694 2710 -604 1840 141 28 0 chr12 33169595 33169886 -111112603 + AluSx SINE Alu 1 299 -13 220 233 0 27 chr12 33169886 33169941 -111112548 + L2 LINE L2 2710 2764 -550 347 124 199 16 chr12 33169941 33170021 -111112468 + AluSc SINE Alu 223 293 -6 25 0 0 0 chr12 33170214 33170239 -111112250 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr12 33170350 33170373 -111112116 + AT_rich Low_complexity Low_complexity 1 23 0 316 71 0 0 chr12 33170714 33170756 -111111733 - AluSq/x SINE Alu -194 108 67 2279 95 7 0 chr12 33171273 33171569 -111110920 - AluSx SINE Alu -14 298 1 2225 108 6 19 chr12 33173548 33173863 -111108626 - AluSx SINE Alu -1 311 1 378 304 30 0 chr12 33175436 33175571 -111106918 + MIR SINE MIR 68 206 -56 2458 92 0 0 chr12 33175655 33175958 -111106531 + AluSq SINE Alu 2 304 -9 444 296 112 16 chr12 33176280 33176617 -111105872 + LTR16A LTR ERVL 24 444 -6 2390 101 3 0 chr12 33176781 33177087 -111105402 - AluSx SINE Alu -5 307 1 241 232 0 18 chr12 33177087 33177143 -111105346 + L2 LINE L2 2376 2430 -884 2108 141 3 0 chr12 33177221 33177526 -111104963 - AluSx SINE Alu -6 306 1 2284 87 14 0 chr12 33177540 33177829 -111104660 - AluSg SINE Alu -17 293 1 228 54 0 0 chr12 33178177 33178214 -111104275 - Alu SINE Alu -3 300 264 2206 97 3 7 chr12 33178214 33178504 -111103985 - AluSx SINE Alu -8 304 16 708 139 0 151 chr12 33178525 33178691 -111103798 + FLAM_C SINE Alu 2 142 -1 2412 98 0 0 chr12 33178695 33179002 -111103487 + AluSx SINE Alu 1 307 -5 1351 174 5 0 chr12 33179044 33179262 -111103227 + AluJo SINE Alu 84 302 -10 1100 209 155 30 chr12 33179262 33179299 -111103190 - MLT1A1 LTR MaLR -32 333 302 2047 110 3 28 chr12 33179299 33179614 -111102875 + AluSq SINE Alu 1 308 0 1100 209 155 30 chr12 33179614 33179871 -111102618 - MLT1A1 LTR MaLR -63 302 1 356 223 46 31 chr12 33179996 33180126 -111102363 + L1M4 LINE L1 5167 5298 -848 1343 170 22 9 chr12 33180422 33180652 -111101837 - AluSx SINE Alu -79 233 1 1312 152 118 13 chr12 33181390 33181627 -111100862 + AluSx SINE Alu 2 263 -49 240 259 27 65 chr12 33181781 33181966 -111100523 + G-rich Low_complexity Low_complexity 2 179 0 225 193 0 0 chr12 33181994 33182051 -111100438 + AluSx SINE Alu 240 296 -6 288 210 120 40 chr12 33182051 33182151 -111100338 + L1M4 LINE L1 2470 2577 -3569 2195 120 3 0 chr12 33182160 33182461 -111100028 + AluSg SINE Alu 1 302 -8 300 185 0 0 chr12 33182470 33182524 -111099965 + L1M4 LINE L1 2667 2720 -3426 1923 121 3 51 chr12 33182530 33182843 -111099646 + AluSq SINE Alu 1 298 -15 687 110 63 31 chr12 33182973 33183100 -111099389 - AluSq/x SINE Alu -181 132 2 2172 85 6 31 chr12 33183305 33183624 -111098865 - AluY SINE Alu 0 311 1 2007 154 0 0 chr12 33183625 33183917 -111098572 - AluJb SINE Alu -16 296 5 892 202 6 6 chr12 33184728 33184896 -111097593 - AluJo SINE Alu -107 205 38 24 32 0 0 chr12 33185088 33185119 -111097370 + GC_rich Low_complexity Low_complexity 1 31 0 2072 125 0 0 chr12 33185901 33186180 -111096309 + AluJb SINE Alu 1 279 -33 36 0 0 0 chr12 33186313 33186349 -111096140 + AT_rich Low_complexity Low_complexity 1 36 0 764 149 0 0 chr12 33186349 33186463 -111096026 - FLAM_C SINE Alu -24 119 6 21 0 0 0 chr12 33186467 33186488 -111096001 + AT_rich Low_complexity Low_complexity 1 21 0 2170 101 3 0 chr12 33186488 33186775 -111095714 - AluSx SINE Alu -24 288 1 978 158 10 41 chr12 33186981 33187177 -111095312 - AluSg/x SINE Alu -2 308 119 270 218 0 0 chr12 33237339 33237394 -111045095 + L1MC4a LINE L1 5795 5849 -1959 888 159 0 0 chr12 33237404 33237530 -111044959 + AluSq/x SINE Alu 1 126 -187 877 163 13 8 chr12 33237532 33237561 -111044928 + GA-rich Low_complexity Low_complexity 1 28 -523 2073 113 7 45 chr12 33237561 33237870 -111044619 + AluSx SINE Alu 1 297 -15 877 163 13 8 chr12 33237870 33238081 -111044408 + GA-rich Low_complexity Low_complexity 28 551 0 331 159 8 76 chr12 33238102 33238234 -111044255 + GA-rich Low_complexity Low_complexity 1 123 0 3466 123 37 4 chr12 33238242 33238752 -111043737 + MER1A DNA MER1_type 1 527 0 323 210 62 0 chr12 33238752 33238833 -111043656 + L1MC4a LINE L1 5856 5941 -1867 2437 84 0 0 chr12 33238834 33239130 -111043359 + AluY SINE Alu 1 296 -15 186 103 0 0 chr12 33239144 33239173 -111043316 + (TG)n Simple_repeat Simple_repeat 2 30 0 1723 186 10 0 chr12 33239331 33239627 -111042862 + AluJb SINE Alu 1 299 -13 2295 82 32 0 chr12 33239666 33239946 -111042543 - AluY SINE Alu -22 289 1 1142 145 0 0 chr12 33240464 33240636 -111041853 - AluJb SINE Alu -6 306 135 2385 80 0 3 chr12 33241061 33241349 -111041140 + AluY SINE Alu 1 287 -24 2260 108 0 3 chr12 33241561 33241857 -111040632 + AluSx SINE Alu 1 295 -17 2584 62 0 3 chr12 33241907 33242212 -111040277 + AluY SINE Alu 1 304 -7 2496 206 10 20 chr12 33242323 33242833 -111039656 - MLT1D LTR MaLR 0 505 1 366 275 0 0 chr12 33243093 33243173 -111039316 - MLT1J LTR MaLR -333 178 99 2371 98 0 0 chr12 33244475 33244780 -111037709 - AluY SINE Alu -6 305 1 2025 116 0 0 chr12 33245112 33245380 -111037109 + AluSx SINE Alu 7 274 -38 895 132 7 21 chr12 33245380 33245524 -111036965 + AluSg/x SINE Alu 163 304 -8 776 62 0 18 chr12 33245559 33245671 -111036818 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 1713 139 4 26 chr12 33245697 33245963 -111036526 - AluJo SINE Alu -52 260 1 1643 169 0 11 chr12 33246691 33246963 -111035526 + AluJb SINE Alu 21 289 -23 616 219 0 0 chr12 33246965 33247079 -111035410 + AluJo/FLAM SINE Alu 2 115 -197 2108 142 0 0 chr12 33247080 33247382 -111035107 - AluSx SINE Alu -10 302 1 21 0 0 0 chr12 33247397 33247418 -111035071 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr12 33247429 33247475 -111035014 + (CTATT)n Simple_repeat Simple_repeat 1 46 0 1669 153 39 25 chr12 33247476 33247757 -111034732 - AluJo SINE Alu -27 285 1 226 0 0 56 chr12 33247761 33247797 -111034692 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2325 86 0 0 chr12 33247801 33248091 -111034398 - AluY SINE Alu -21 290 1 2208 98 7 0 chr12 33248233 33248520 -111033969 + AluSq SINE Alu 1 289 -24 872 121 0 0 chr12 33248556 33248672 -111033817 + AluSq/x SINE Alu 1 116 -197 2082 176 31 5 chr12 33248740 33249131 -111033358 - MER57A LTR ERV1 0 403 3 22 0 0 0 chr12 33250899 33250921 -111031568 + AT_rich Low_complexity Low_complexity 1 22 0 2106 117 0 23 chr12 33250921 33251228 -111031261 - AluSx SINE Alu -2 310 11 2426 85 0 3 chr12 33251244 33251549 -111030940 - AluSq SINE Alu -9 304 1 669 196 0 43 chr12 33251583 33251721 -111030768 + FLAM_C SINE Alu 2 133 0 300 111 0 0 chr12 33251723 33251777 -111030712 + (GGGGA)n Simple_repeat Simple_repeat 5 58 0 3732 126 66 95 chr12 33252120 33252927 -111029562 + LTR1 LTR ERV1 3 785 0 742 173 0 8 chr12 33253597 33253724 -111028765 - FLAM_C SINE Alu -16 127 2 224 347 70 19 chr12 33253844 33254057 -111028432 - L2 LINE L2 -1012 2302 2079 2068 179 127 54 chr12 33254279 33254775 -111027714 + MLT1F LTR MaLR 3 534 -8 764 175 16 0 chr12 33254967 33255093 -111027396 + FLAM_C SINE Alu 2 129 -14 213 218 0 0 chr12 33255093 33255171 -111027318 + (TA)n Simple_repeat Simple_repeat 1 78 0 309 326 10 0 chr12 33256215 33256313 -111026176 + MIR SINE MIR 47 145 -117 2130 117 14 0 chr12 33256394 33256684 -111025805 - AluSq SINE Alu -19 294 1 1682 128 32 110 chr12 33256735 33257080 -111025409 - AluYb8 SINE Alu 0 318 1 2338 100 0 0 chr12 33257205 33257505 -111024984 + AluSg1 SINE Alu 1 300 -9 229 255 99 21 chr12 33257778 33257919 -111024570 - L1ME4a LINE L1 -1 6120 5969 2494 82 0 0 chr12 33257987 33258292 -111024197 - AluY SINE Alu -5 306 2 2066 105 49 0 chr12 33258294 33258579 -111023910 - AluSq SINE Alu -14 299 1 2417 95 0 0 chr12 33258629 33258934 -111023555 - AluY SINE Alu -6 305 1 288 252 122 84 chr12 33259474 33259504 -111022985 + MER91C DNA MER1_type 4 31 -109 2351 76 3 0 chr12 33259504 33259805 -111022684 - AluSg SINE Alu -8 302 1 288 252 122 84 chr12 33259805 33259905 -111022584 + MER91C DNA MER1_type 31 139 -1 1359 121 10 0 chr12 33260220 33260419 -111022070 - AluSq SINE Alu -17 296 96 2311 85 3 0 chr12 33262468 33262774 -111019715 - AluSq SINE Alu -6 307 1 231 125 172 0 chr12 33262932 33262996 -111019493 - L1ME4a LINE L1 0 6121 6047 2116 119 0 3 chr12 33263201 33263512 -111018977 - AluSq SINE Alu -3 310 1 1854 145 13 0 chr12 33263570 33263874 -111018615 + AluSg SINE Alu 1 308 -2 2250 55 13 7 chr12 33264214 33264523 -111017966 + AluY SINE Alu 1 311 0 433 181 103 35 chr12 33264593 33264709 -111017780 - MIR SINE MIR -42 220 97 688 193 22 30 chr12 33265305 33265440 -111017049 + MER94 DNA DNA 1 134 0 247 250 167 52 chr12 33265485 33265508 -111016981 + MIR SINE MIR 89 108 -154 1427 184 6 58 chr12 33265508 33265696 -111016793 - AluJb SINE Alu -2 310 145 2349 65 0 0 chr12 33265696 33265989 -111016500 - AluY SINE Alu -18 293 1 1427 184 6 58 chr12 33265989 33266127 -111016362 - AluJb SINE Alu -167 145 1 247 250 167 52 chr12 33266127 33266199 -111016290 + MIR SINE MIR 108 195 -67 4010 139 13 6 chr12 33266274 33266905 -111015584 - MER41B LTR ERV1 0 635 1 1636 145 50 7 chr12 33267150 33267433 -111015056 - AluJo SINE Alu -15 297 3 819 308 53 32 chr12 33268105 33268443 -111014046 - L2 LINE L2 0 3313 2969 2051 43 111 0 chr12 33268450 33268730 -111013759 + AluY SINE Alu 1 311 0 1237 126 5 0 chr12 33268730 33268921 -111013568 + AluSp SINE Alu 121 312 -1 2123 85 3 0 chr12 33268926 33269244 -111013245 + AluSp SINE Alu 1 319 0 2210 94 3 0 chr12 33269311 33269609 -111012880 + AluSq SINE Alu 1 299 -14 1216 124 0 0 chr12 33269609 33269787 -111012702 + AluSg/x SINE Alu 132 309 -1 2426 115 37 47 chr12 33269787 33270266 -111012223 - MER4E LTR ERV1 -316 326 1 336 177 73 10 chr12 33270277 33270373 -111012116 - L1MC4 LINE L1 -501 7541 7440 1836 142 13 13 chr12 33270393 33270703 -111011786 + AluSx SINE Alu 1 310 -2 441 126 63 84 chr12 33270753 33270848 -111011641 - U6 snRNA snRNA 0 107 15 2281 69 0 0 chr12 33270849 33271137 -111011352 + AluY SINE Alu 1 288 -23 482 258 0 13 chr12 33271140 33271295 -111011194 + (CATA)n Simple_repeat Simple_repeat 4 156 0 809 171 0 0 chr12 33271361 33271490 -111010999 + FLAM_C SINE Alu 1 129 -4 242 224 45 97 chr12 33271493 33271627 -111010862 - LTR40b LTR ERVL -7 455 329 473 242 150 65 chr12 33271831 33272137 -111010352 + LTR68 LTR ERV1 405 736 -4 1410 108 83 129 chr12 33272444 33272685 -111009804 - pTR5 LTR ERV1 -107 607 171 382 204 31 20 chr12 33272687 33272785 -111009704 - LTR30 LTR ERV1 -80 642 544 6122 132 58 117 chr12 33272785 33274148 -111008341 - pTR5 LTR ERV1 -413 2025 743 2837 141 24 12 chr12 33274274 33274863 -111007626 + MER4E LTR ERV1 3 766 0 359 238 68 122 chr12 33274968 33275008 -111007481 - MLT1J LTR MaLR -195 316 275 2478 127 53 14 chr12 33275008 33275441 -111007048 + LTR7 LTR ERV1 1 450 0 359 238 68 122 chr12 33275441 33275684 -111006805 - MLT1J LTR MaLR -236 275 47 285 29 0 0 chr12 33275684 33275718 -111006771 + (TG)n Simple_repeat Simple_repeat 2 35 0 5909 65 13 12 chr12 33275805 33276431 -111006058 + MER4E LTR ERV1 1 630 -136 2384 53 10 3 chr12 33276431 33276731 -111005758 + AluY SINE Alu 1 302 -9 5909 65 13 12 chr12 33276731 33276869 -111005620 + MER4E LTR ERV1 630 766 0 899 248 86 48 chr12 33276936 33277332 -111005157 + LTR16A1 LTR ERVL 47 457 0 375 188 89 0 chr12 33277339 33277440 -111005049 + L1MC/D LINE L1 5667 5776 -2032 2177 96 7 0 chr12 33277520 33277813 -111004676 - AluSx SINE Alu -17 295 1 2271 75 3 3 chr12 33277847 33278142 -111004347 - AluSx SINE Alu -17 295 1 234 264 299 0 chr12 33278148 33278235 -111004254 - MLT1H LTR MaLR -386 163 51 929 220 47 91 chr12 33278577 33278673 -111003816 - Charlie2 DNA MER1_type -93 2769 2670 2006 111 0 4 chr12 33278673 33278952 -111003537 + AluSg SINE Alu 1 278 -32 180 0 0 0 chr12 33278952 33278972 -111003517 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 929 220 47 91 chr12 33278972 33279267 -111003222 - Charlie2 DNA MER1_type -191 2671 2403 2367 70 0 0 chr12 33279267 33279568 -111002921 - AluY SINE Alu -10 301 1 929 220 47 91 chr12 33279568 33279688 -111002801 - Charlie2 DNA MER1_type -459 2403 2279 1159 204 58 122 chr12 33279962 33280304 -111002185 - MER21B LTR ERV1 -441 422 114 840 119 0 0 chr12 33280304 33280422 -111002067 + AluJ SINE Alu 1 118 -184 1159 204 58 122 chr12 33280422 33280530 -111001959 - MER21B LTR ERV1 -749 114 1 2179 96 3 7 chr12 33280675 33280966 -111001523 - AluSg SINE Alu -20 290 1 992 165 0 27 chr12 33281118 33281133 -111001356 + AluJ SINE Alu 120 134 -178 1821 145 0 31 chr12 33281133 33281267 -111001222 + AluSx SINE Alu 3 140 -172 2082 104 13 3 chr12 33281267 33281565 -111000924 + AluSg SINE Alu 1 301 -9 1821 145 0 31 chr12 33281565 33281747 -111000742 + AluSx SINE Alu 140 309 -3 992 165 0 27 chr12 33281747 33281919 -111000570 + AluJ SINE Alu 134 302 -10 1767 157 20 7 chr12 33282523 33282823 -110999666 - AluJb SINE Alu -8 304 1 276 289 37 37 chr12 33282889 33283024 -110999465 + LTR49-int LTR ERV1 3 137 -7400 262 229 16 0 chr12 33283118 33283179 -110999310 + MER34B LTR ERV1 504 565 0 2204 87 0 10 chr12 33283309 33283609 -110998880 - AluSg SINE Alu -9 301 5 254 333 44 18 chr12 33283863 33283977 -110998512 + LTR49-int LTR ERV1 1366 1482 -4464 252 257 88 68 chr12 33284093 33284241 -110998248 + LTR49-int LTR ERV1 1372 1522 -4809 1342 192 58 31 chr12 33284248 33284540 -110997949 - AluJb SINE Alu -2 300 1 279 181 48 48 chr12 33284883 33284988 -110997501 + LTR49-int LTR ERV1 1290 1394 -4937 51 31 0 0 chr12 33285323 33285388 -110997101 + AT_rich Low_complexity Low_complexity 1 65 0 1938 137 23 0 chr12 33285507 33285806 -110996683 + AluSx SINE Alu 2 307 -5 281 245 133 0 chr12 33285908 33286006 -110996483 + LTR49-int LTR ERV1 1523 1633 -4698 710 153 0 0 chr12 33286026 33286137 -110996352 + AluSg/x SINE Alu 185 295 -15 258 159 0 63 chr12 33286201 33286264 -110996225 - LTR49-int LTR ERV1 -2377 2494 2436 710 176 51 33 chr12 33286267 33286546 -110995943 - LTR49-int LTR ERV1 -3202 3129 1186 607 191 52 33 chr12 33286342 33286552 -110995937 - LTR57-int LTR ERVL -4247 1096 883 * 609 252 0 0 chr12 33286579 33286706 -110995783 - FLAM_A SINE Alu -3 130 4 419 274 40 74 chr12 33286726 33286901 -110995588 - LTR49-int LTR ERV1 -4231 2100 1932 876 131 0 15 chr12 33286910 33287047 -110995442 + AluJo SINE Alu 1 135 -177 563 215 93 45 chr12 33287092 33287290 -110995199 - LTR49-int LTR ERV1 -4391 545 351 1402 151 22 40 chr12 33287304 33287582 -110994907 + AluJo SINE Alu 30 302 -10 3884 159 17 51 chr12 33287657 33287906 -110994583 + MER84-int LTR ERV1 4267 4523 -1808 2209 97 0 6 chr12 33287906 33288217 -110994272 - AluY SINE Alu -2 309 1 3884 159 17 51 chr12 33288217 33288277 -110994212 + MER84-int LTR ERV1 4523 4583 -1748 1782 149 0 20 chr12 33288277 33288572 -110993917 - AluJo SINE Alu -12 300 12 3884 159 17 51 chr12 33288572 33289072 -110993417 + MER84-int LTR ERV1 4583 5050 -1281 274 220 70 20 chr12 33289078 33289178 -110993311 + MER84-int LTR ERV1 4274 4378 -576 1552 162 55 3 chr12 33289209 33289499 -110992990 + AluJb SINE Alu 1 305 -7 1364 139 14 96 chr12 33289738 33290019 -110992470 - MER61E LTR ERV1 -43 526 269 1006 174 48 48 chr12 33290093 33290300 -110992189 - LTR25 LTR ERV1 -340 454 248 808 149 6 77 chr12 33290288 33290456 -110992033 - MER61E LTR ERV1 -413 156 1 * 283 258 53 73 chr12 33291304 33291455 -110991034 + L1P LINE L1 4901 5048 -1098 207 0 0 0 chr12 33291609 33291632 -110990857 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1278 58 0 0 chr12 33291634 33291790 -110990699 - AluY SINE Alu -23 288 133 294 258 0 0 chr12 33291864 33291930 -110990559 - AluSp/q SINE Alu -20 283 218 204 149 0 0 chr12 33291962 33292009 -110990480 + (TC)n Simple_repeat Simple_repeat 1 47 0 540 72 0 0 chr12 33292036 33292105 -110990384 + AluSc SINE Alu 222 290 -19 306 0 0 0 chr12 33292105 33292139 -110990350 + (TA)n Simple_repeat Simple_repeat 2 35 0 422 274 112 88 chr12 33292355 33292477 -110990012 + L1M4 LINE L1 4643 4761 -1385 776 181 0 0 chr12 33292477 33292610 -110989879 + FLAM_C SINE Alu 1 133 0 422 274 112 88 chr12 33292610 33292907 -110989582 + L1M4 LINE L1 4761 5072 -1074 2480 66 0 0 chr12 33293018 33293322 -110989167 - AluY SINE Alu -7 304 1 810 126 8 0 chr12 33293322 33293449 -110989040 - AluSq/x SINE Alu -176 136 9 1356 190 158 14 chr12 33293501 33293932 -110988557 - L1MC4 LINE L1 -1 8041 7549 2459 45 2 134 chr12 33293932 33294328 -110988161 - MER4E LTR ERV1 0 766 423 2123 98 7 0 chr12 33294329 33294625 -110987864 + AluSc SINE Alu 1 298 -11 231 93 111 19 chr12 33294643 33294677 -110987812 + Alu SINE Alu 6 44 -256 255 128 0 0 chr12 33294677 33294716 -110987773 + Alu SINE Alu 1 39 -262 2143 104 3 0 chr12 33294717 33295015 -110987474 + AluSq SINE Alu 1 299 -14 1117 133 0 0 chr12 33295015 33295180 -110987309 + AluSg/x SINE Alu 134 298 -14 2434 112 37 49 chr12 33295180 33295660 -110986829 - MER4E LTR ERV1 -316 326 1 336 177 73 10 chr12 33295671 33295767 -110986722 - L1MC4 LINE L1 -501 7541 7440 1836 142 13 13 chr12 33295787 33296097 -110986392 + AluSx SINE Alu 1 310 -2 441 126 63 84 chr12 33296147 33296242 -110986247 - U6 snRNA snRNA 0 107 15 2281 69 0 0 chr12 33296243 33296531 -110985958 + AluY SINE Alu 1 288 -23 506 256 0 12 chr12 33296531 33296691 -110985798 + (CATA)n Simple_repeat Simple_repeat 3 160 0 809 171 0 0 chr12 33296757 33296886 -110985603 + FLAM_C SINE Alu 1 129 -4 242 224 45 97 chr12 33296889 33297023 -110985466 - LTR40b LTR ERVL -7 455 329 473 242 150 65 chr12 33297227 33297533 -110984956 + LTR68 LTR ERV1 405 736 -4 1433 107 46 18 chr12 33297840 33298081 -110984408 - pTR5 LTR ERV1 -107 607 171 382 204 31 20 chr12 33298083 33298181 -110984308 - LTR30 LTR ERV1 -80 642 544 6122 132 58 117 chr12 33298181 33299544 -110982945 - pTR5 LTR ERV1 -413 2025 743 2837 141 24 12 chr12 33299670 33300259 -110982230 + MER4E LTR ERV1 3 766 0 359 238 68 122 chr12 33300364 33300404 -110982085 - MLT1J LTR MaLR -195 316 275 2478 127 53 14 chr12 33300404 33300837 -110981652 + LTR7 LTR ERV1 1 450 0 359 238 68 122 chr12 33300837 33301080 -110981409 - MLT1J LTR MaLR -236 275 47 303 28 0 0 chr12 33301080 33301116 -110981373 + (TG)n Simple_repeat Simple_repeat 2 37 0 5909 65 13 12 chr12 33301203 33301829 -110980660 + MER4E LTR ERV1 1 630 -136 2377 57 10 3 chr12 33301829 33302130 -110980359 + AluY SINE Alu 1 303 -8 5909 65 13 12 chr12 33302130 33302268 -110980221 + MER4E LTR ERV1 630 766 0 899 248 86 48 chr12 33302335 33302731 -110979758 + LTR16A1 LTR ERVL 47 457 0 375 188 89 0 chr12 33302738 33302839 -110979650 + L1MC/D LINE L1 5667 5776 -2032 2177 96 7 0 chr12 33302919 33303212 -110979277 - AluSx SINE Alu -17 295 1 2315 78 3 0 chr12 33303246 33303540 -110978949 - AluSx SINE Alu -17 295 1 37 23 0 0 chr12 33303543 33303587 -110978902 + AT_rich Low_complexity Low_complexity 1 44 0 1909 138 7 3 chr12 33303587 33303877 -110978612 + AluJb SINE Alu 1 291 -21 2460 62 0 0 chr12 33303940 33304245 -110978244 + AluY SINE Alu 1 305 -6 317 306 268 0 chr12 33304512 33304796 -110977693 + L2 LINE L2 1746 2105 -1209 1032 75 82 0 chr12 33304798 33304945 -110977544 - AluSq SINE Alu -21 292 134 1318 91 0 122 chr12 33304945 33305147 -110977342 - AluSg/x SINE Alu -3 309 143 2143 120 0 0 chr12 33305147 33305448 -110977041 - AluSx SINE Alu -11 301 1 1318 91 0 122 chr12 33305448 33305499 -110976990 - AluSg/x SINE Alu -169 143 87 789 331 111 41 chr12 33305511 33305569 -110976920 + L2 LINE L2 2199 2252 -1061 1746 152 7 7 chr12 33305569 33305865 -110976624 - AluJb SINE Alu -16 296 1 789 331 111 41 chr12 33305865 33305877 -110976612 + L2 LINE L2 2252 2262 -1051 1858 110 24 14 chr12 33305877 33306216 -110976273 - AluSx SINE Alu 0 312 1 789 331 111 41 chr12 33306216 33306866 -110975623 + L2 LINE L2 2262 3074 -239 1751 159 21 7 chr12 33306866 33307155 -110975334 + AluJb SINE Alu 1 293 -19 789 331 111 41 chr12 33307155 33307380 -110975109 + L2 LINE L2 3074 3282 -31 2067 97 7 0 chr12 33307489 33307787 -110974702 - AluY SINE Alu -11 300 1 1096 123 6 0 chr12 33307927 33308089 -110974400 + AluSc SINE Alu 127 289 -20 1808 143 7 10 chr12 33308097 33308397 -110974092 + AluJo SINE Alu 6 304 -8 258 383 45 13 chr12 33308406 33308560 -110973929 + L2 LINE L2 2915 3073 -199 201 232 29 14 chr12 33308624 33308693 -110973796 + (TTTG)n Simple_repeat Simple_repeat 3 72 0 543 226 26 17 chr12 33308699 33308814 -110973675 + MER58A DNA MER1_type 1 116 0 275 102 0 153 chr12 33308811 33308832 -110973657 + MER58A DNA MER1_type 174 197 -2223 * 2119 120 0 0 chr12 33308832 33309131 -110973358 - AluSq SINE Alu -14 299 1 275 102 0 153 chr12 33309131 33309168 -110973321 + MER58A DNA MER1_type 197 223 -1 608 256 100 6 chr12 33309277 33309437 -110973052 - MIR SINE MIR -41 221 47 439 115 92 35 chr12 33309449 33309536 -110972953 - AluSp/q SINE Alu -4 309 218 1723 201 92 38 chr12 33309562 33310040 -110972449 + L1MC4 LINE L1 7213 7716 -326 2020 120 28 0 chr12 33310085 33310376 -110972113 + AluSx SINE Alu 1 299 -13 941 254 133 59 chr12 33310387 33310791 -110971698 + MLT1H LTR MaLR 73 515 -34 2047 99 11 14 chr12 33310791 33311113 -110971376 - AluSg SINE Alu 0 321 1 941 254 133 59 chr12 33311113 33311151 -110971338 + MLT1H LTR MaLR 515 549 0 2320 114 0 9 chr12 33311439 33311754 -110970735 - AluSx SINE Alu 0 312 1 1780 156 58 0 chr12 33312332 33312627 -110969862 - AluJb SINE Alu 0 312 1 362 288 69 56 chr12 33313917 33314223 -110968266 - MER68 LTR ERV1 -72 490 181 1634 168 33 7 chr12 33314554 33314870 -110967619 - AluSx SINE Alu 0 325 3 2492 65 0 0 chr12 33315159 33315451 -110967038 + AluSq SINE Alu 1 292 -21 2181 114 0 10 chr12 33315468 33315766 -110966723 + AluSx SINE Alu 3 297 -15 2051 159 15 40 chr12 33315837 33316232 -110966257 - Tigger1 DNA MER2_type -15 2403 2019 6244 150 37 27 chr12 33316234 33317760 -110964729 - L1PB2 LINE L1 -3 6148 4637 2615 52 0 0 chr12 33317760 33318067 -110964422 - AluY SINE Alu -4 307 1 6244 150 37 27 chr12 33318067 33318339 -110964150 - L1PB2 LINE L1 -1514 4637 4369 305 62 21 0 chr12 33318339 33318387 -110964102 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6244 150 37 27 chr12 33318387 33318695 -110963794 - L1PB2 LINE L1 -1782 4369 4019 6062 112 28 50 chr12 33318697 33319474 -110963015 - Tigger1 DNA MER2_type -376 2042 1250 1789 166 3 7 chr12 33319474 33319763 -110962726 + AluJb SINE Alu 1 288 -24 6062 112 28 50 chr12 33319763 33319866 -110962623 - Tigger1 DNA MER2_type -1168 1250 1183 2080 148 0 0 chr12 33319866 33320169 -110962320 - AluSx SINE Alu -9 303 1 6062 112 28 50 chr12 33320169 33320276 -110962213 - Tigger1 DNA MER2_type -1235 1183 1075 2204 106 0 0 chr12 33320396 33320715 -110961774 + AluSx SINE Alu 1 319 0 2164 106 3 10 chr12 33320719 33321043 -110961446 + AluSq SINE Alu 1 313 0 1097 183 50 5 chr12 33321044 33321246 -110961243 + MER61E LTR ERV1 355 565 -4 521 273 67 64 chr12 33321259 33321515 -110960974 - MER68 LTR ERV1 -158 447 148 6437 150 5 24 chr12 33321846 33322221 -110960268 + L1PB2 LINE L1 4125 4506 -1645 2117 124 0 0 chr12 33322221 33322538 -110959951 + AluSx SINE Alu 1 312 0 6437 150 5 24 chr12 33322538 33323075 -110959414 + L1PB2 LINE L1 4506 5052 -1099 2305 83 17 0 chr12 33323075 33323377 -110959112 + AluSx SINE Alu 6 312 0 6437 150 5 24 chr12 33323377 33323420 -110959069 + L1PB2 LINE L1 5052 5094 -1057 2120 136 0 0 chr12 33323420 33323715 -110958774 + AluSg SINE Alu 1 295 -15 6437 150 5 24 chr12 33323715 33324829 -110957660 + L1PB2 LINE L1 5094 6151 0 1862 158 3 13 chr12 33324842 33325140 -110957349 + AluSx SINE Alu 1 295 -17 1613 172 61 11 chr12 33325286 33325565 -110956924 - AluSx SINE Alu -19 293 1 913 156 0 0 chr12 33325565 33325700 -110956789 - AluSq/x SINE Alu -178 135 1 852 190 41 10 chr12 33325798 33326004 -110956485 - MER61D LTR ERV1 -17 750 338 2123 123 0 43 chr12 33327049 33327375 -110955114 + AluSx SINE Alu 1 312 0 261 0 0 0 chr12 33327518 33327547 -110954942 + (TG)n Simple_repeat Simple_repeat 2 30 0 229 106 0 197 chr12 33327677 33327708 -110954781 + MLT1H1 LTR MaLR 494 508 -47 1949 133 30 0 chr12 33327708 33328018 -110954471 - AluSc SINE Alu 0 318 1 229 106 0 197 chr12 33328018 33328051 -110954438 + MLT1H1 LTR MaLR 508 546 -9 752 256 96 41 chr12 33328102 33328395 -110954094 - Charlie2 DNA MER1_type -2553 309 1 2058 109 0 0 chr12 33328890 33329165 -110953324 - AluSx SINE Alu -5 307 33 2217 83 24 3 chr12 33329175 33329464 -110953025 - AluSc SINE Alu -14 295 1 2049 123 9 25 chr12 33329870 33330186 -110952303 + AluSx SINE Alu 1 311 -1 842 106 9 0 chr12 33330364 33330477 -110952012 + AluSg/x SINE Alu 171 284 -26 2294 92 3 0 chr12 33330505 33330799 -110951690 + AluSx SINE Alu 1 295 -17 927 259 44 45 chr12 33330801 33331237 -110951252 + MER21A-int LTR ERV1 4560 5032 -2804 310 246 48 18 chr12 33331501 33331652 -110950837 + MER21A-int LTR ERV1 4733 4801 -1728 2001 139 3 7 chr12 33331653 33331948 -110950541 - AluSx SINE Alu -18 294 1 940 98 8 8 chr12 33331950 33332082 -110950407 - AluSp SINE Alu -181 132 1 931 295 50 45 chr12 33332090 33332202 -110950287 + MER21A-int LTR ERV1 4624 4734 -3022 3729 76 13 2 chr12 33332202 33332650 -110949839 - MLT2A2 LTR ERVL 0 453 1 931 295 50 45 chr12 33332650 33333268 -110949221 + MER21A-int LTR ERV1 4734 6072 -1684 2277 87 7 0 chr12 33333414 33333703 -110948786 - AluSc SINE Alu -18 291 1 2052 89 44 0 chr12 33333718 33334012 -110948477 - AluY SINE Alu 0 306 1 972 169 12 0 chr12 33334038 33334204 -110948285 + MER21A-int LTR ERV1 7499 7666 -150 1157 86 0 0 chr12 33334208 33334347 -110948142 + AluSc SINE Alu 3 141 -168 1644 87 5 0 chr12 33334350 33334556 -110947933 + AluSq SINE Alu 7 213 -100 853 123 19 45 chr12 33334796 33334950 -110947539 - FRAM SINE Alu -18 158 9 881 252 38 106 chr12 33334972 33335445 -110947044 - MER34 LTR ERV1 0 542 102 961 169 17 11 chr12 33335476 33335488 -110947001 - AluJb SINE Alu 0 312 302 1923 132 3 46 chr12 33335488 33335814 -110946675 - AluJb SINE Alu 0 312 1 961 169 17 11 chr12 33335814 33335978 -110946511 - AluJb SINE Alu -10 302 135 386 266 11 0 chr12 33335985 33336079 -110946410 - MER34 LTR ERV1 -447 95 1 2131 64 78 7 chr12 33336144 33336425 -110946064 + AluY SINE Alu 1 301 -10 689 266 51 21 chr12 33336546 33336783 -110945706 + MLT2F LTR ERVL 1 244 -419 901 146 277 0 chr12 33336784 33336990 -110945499 + MER21A LTR ERV1 2 264 -667 2955 144 59 42 chr12 33336995 33337024 -110945465 + MER21A LTR ERV1 376 403 -528 2222 99 0 10 chr12 33337024 33337336 -110945153 + AluSx SINE Alu 3 312 0 2955 144 59 42 chr12 33337336 33337847 -110944642 + MER21A LTR ERV1 403 925 -6 785 240 131 64 chr12 33337888 33338246 -110944243 + MLT2F LTR ERVL 280 661 -2 292 245 254 7 chr12 33338300 33338439 -110944050 - MIR SINE MIR -27 235 63 3342 137 99 91 chr12 33338480 33338520 -110943969 - LTR8 LTR ERV1 0 691 653 1636 171 42 0 chr12 33338520 33338784 -110943705 - AluSx SINE Alu -37 275 1 3342 137 99 91 chr12 33338784 33338885 -110943604 - LTR8 LTR ERV1 -38 653 554 1817 121 0 0 chr12 33338885 33339133 -110943356 - AluSg SINE Alu -1 309 62 3342 137 99 91 chr12 33339133 33339674 -110942815 - LTR8 LTR ERV1 -137 554 2 342 242 11 0 chr12 33339768 33339859 -110942630 + MER34 LTR ERV1 1 92 -450 860 145 0 0 chr12 33339860 33339977 -110942512 + FLAM_C SINE Alu 1 117 -16 1082 224 58 139 chr12 33339977 33340702 -110941787 + PABL_B LTR ERV1 1 667 0 898 159 0 0 chr12 33340725 33340863 -110941626 + AluJb SINE Alu 132 269 -43 691 224 131 73 chr12 33340864 33341261 -110941228 + MER34 LTR ERV1 123 542 0 1437 71 0 112 chr12 33341279 33341524 -110940965 + AluSq SINE Alu 84 303 0 26 30 0 0 chr12 33341863 33341896 -110940593 + AT_rich Low_complexity Low_complexity 1 33 0 255 241 31 93 chr12 33342098 33342260 -110940229 - L1ME4a LINE L1 -22 6083 1175 242 250 13 26 chr12 33342272 33342348 -110940141 - LTR37B LTR ERV1 -184 284 210 372 206 16 0 chr12 33342458 33342521 -110939968 - MER2 DNA MER2_type -2 343 280 1641 156 3 36 chr12 33342536 33342838 -110939651 + AluJb SINE Alu 5 296 -16 1058 90 0 0 chr12 33342840 33342973 -110939516 + AluSp SINE Alu 1 133 -180 2487 88 0 0 chr12 33342976 33343284 -110939205 + AluY SINE Alu 1 308 -3 313 271 141 56 chr12 33343498 33343692 -110938797 - L1M4 LINE L1 -1168 4978 4753 816 181 0 0 chr12 33343692 33343825 -110938664 - FLAM_C SINE Alu 0 133 1 313 271 141 56 chr12 33343825 33343899 -110938590 - L1M4 LINE L1 -1393 4753 4687 29 0 0 0 chr12 33343928 33343957 -110938532 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr12 33344165 33344185 -110938304 + (TA)n Simple_repeat Simple_repeat 2 21 0 513 65 0 0 chr12 33344185 33344247 -110938242 - AluSc SINE Alu -20 289 228 3205 188 17 64 chr12 33344775 33345020 -110937469 + MER84-int LTR ERV1 4282 4537 -1794 2288 97 0 7 chr12 33345020 33345328 -110937161 - AluY SINE Alu -5 306 1 3205 188 17 64 chr12 33345328 33345388 -110937101 + MER84-int LTR ERV1 4537 4598 -1733 1891 152 0 20 chr12 33345388 33345685 -110936804 - AluJo SINE Alu -10 302 12 3205 188 17 64 chr12 33345685 33346185 -110936304 + MER84-int LTR ERV1 4598 5050 -1281 279 220 70 20 chr12 33346191 33346291 -110936198 + MER84-int LTR ERV1 4274 4378 -576 1673 159 55 3 chr12 33346322 33346612 -110935877 + AluJb SINE Alu 1 305 -7 1351 139 14 96 chr12 33346851 33347132 -110935357 - MER61E LTR ERV1 -43 526 269 1002 174 48 48 chr12 33347206 33347413 -110935076 - LTR25 LTR ERV1 -340 454 248 799 149 6 77 chr12 33347401 33347569 -110934920 - MER61E LTR ERV1 -413 156 1 * 291 258 53 73 chr12 33348418 33348569 -110933920 + L1P LINE L1 4901 5048 -1098 207 0 0 0 chr12 33348723 33348746 -110933743 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2458 59 0 0 chr12 33348748 33349036 -110933453 - AluY SINE Alu -23 288 1 1707 133 0 8 chr12 33349115 33349378 -110933111 + MER2 DNA MER2_type 14 274 -71 347 87 0 0 chr12 33349431 33349477 -110933012 + Alu SINE Alu 1 46 -256 901 172 21 0 chr12 33349590 33349735 -110932754 - AluJo SINE Alu -164 148 1 1249 192 98 15 chr12 33349735 33350073 -110932416 - L1ME1 LINE L1 -227 5939 5574 2423 64 0 29 chr12 33350073 33350387 -110932102 + AluY SINE Alu 1 305 -6 1066 142 0 38 chr12 33350399 33350582 -110931907 - AluJo SINE Alu -44 268 93 1283 179 99 27 chr12 33350584 33350847 -110931642 - MER21B LTR ERV1 -312 551 270 921 273 84 51 chr12 33350966 33351576 -110930913 + L2 LINE L2 2671 3307 -6 2229 104 7 0 chr12 33351775 33352072 -110930417 + AluSp SINE Alu 1 299 -14 243 0 0 0 chr12 33352174 33352201 -110930288 + (CA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr12 33352958 33352979 -110929510 + AT_rich Low_complexity Low_complexity 1 21 0 1449 195 91 75 chr12 33353002 33353386 -110929103 + MLT1B LTR MaLR 1 390 0 26 50 0 0 chr12 33353460 33353500 -110928989 + AT_rich Low_complexity Low_complexity 1 40 0 400 292 70 55 chr12 33353630 33354230 -110928259 + L1M4 LINE L1 3667 4275 -1871 2103 131 80 1 chr12 33354407 33355028 -110927461 + MER4B-int LTR ERV1 4826 5527 -1231 945 219 33 24 chr12 33355043 33355253 -110927236 - AluSg/x SINE Alu -23 289 78 1302 166 9 5 chr12 33355253 33355464 -110927025 - AluSx SINE Alu -100 212 1 802 155 7 35 chr12 33355511 33355653 -110926836 - AluJo SINE Alu -174 138 1 385 109 94 0 chr12 33355659 33355723 -110926766 - Tigger3(Golem) DNA MER2_type -530 2499 2430 969 121 0 0 chr12 33355724 33355856 -110926633 - AluSg/x SINE Alu -21 291 160 260 183 66 22 chr12 33356216 33356353 -110926136 + (TA)n Simple_repeat Simple_repeat 1 143 0 2282 102 42 23 chr12 33357445 33357829 -110924660 - MER61-int LTR ERV1 -3024 2193 1803 2098 141 3 0 chr12 33357832 33358131 -110924358 - AluSx SINE Alu -12 300 1 377 143 0 0 chr12 33358171 33358234 -110924255 + LTR30 LTR ERV1 552 614 -108 1278 213 44 39 chr12 33358260 33358764 -110923725 - LTR10B LTR ERV1 -5 542 1 529 228 66 42 chr12 33358764 33358931 -110923558 - LTR10B-int LTR ERV1 0 6649 6479 2591 166 11 42 chr12 33359977 33360452 -110922037 - L1PB4 LINE L1 -10 6146 5687 1046 139 36 18 chr12 33360583 33360605 -110921884 + AluJo SINE Alu 114 134 -178 2312 92 13 0 chr12 33360605 33360911 -110921578 + AluSq SINE Alu 1 310 -3 1046 139 36 18 chr12 33360911 33361054 -110921435 + AluJo SINE Alu 134 282 -30 948 163 0 6 chr12 33361684 33361844 -110920645 - AluJo SINE Alu -69 243 85 4366 126 63 24 chr12 33361844 33361964 -110920525 - Tigger3b DNA MER2_type -2252 776 662 2094 108 10 0 chr12 33361964 33362261 -110920228 + AluSg SINE Alu 1 300 -10 4366 126 63 24 chr12 33362261 33362887 -110919602 - Tigger3b DNA MER2_type -2366 662 1 278 95 0 24 chr12 33362935 33362977 -110919512 - MLT2B3 LTR ERVL -8 546 506 2842 171 25 23 chr12 33363008 33363521 -110918968 - MLT2B3 LTR ERVL -40 514 1 686 151 19 50 chr12 33363533 33363692 -110918797 + LTR37B LTR ERV1 315 468 0 2212 105 0 3 chr12 33363828 33364123 -110918366 - MER1B DNA MER1_type 0 339 46 1973 111 4 0 chr12 33364149 33364464 -110918025 - AluSx SINE Alu 0 316 1 280 241 0 25 chr12 33364464 33364543 -110917946 - Charlie7 DNA MER1_type -343 2269 2193 1215 271 120 27 chr12 33364558 33365151 -110917338 - Charlie7 DNA MER1_type -1957 655 8 256 241 0 19 chr12 33365356 33365410 -110917079 + MER92C LTR ERV1 4 56 -580 1887 122 25 0 chr12 33365410 33365530 -110916959 + AluSg SINE Alu 4 120 -190 189 0 0 0 chr12 33365530 33365551 -110916938 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 1887 122 25 0 chr12 33365551 33365708 -110916781 + AluSg SINE Alu 120 288 -22 2069 132 0 0 chr12 33365715 33366011 -110916478 + AluSx SINE Alu 1 296 -16 2040 97 23 16 chr12 33366023 33366333 -110916156 + AluSp SINE Alu 1 312 -1 2191 99 0 7 chr12 33366363 33366693 -110915796 + AluY SINE Alu 1 311 0 785 198 95 102 chr12 33366810 33367221 -110915268 + MER92C LTR ERV1 57 552 -2 1541 159 7 61 chr12 33367352 33367523 -110914966 - AluJb SINE Alu -15 297 118 396 0 0 0 chr12 33367523 33367567 -110914922 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2018 124 0 0 chr12 33367567 33367849 -110914640 - AluSx SINE Alu -30 282 1 1541 159 7 61 chr12 33367849 33367972 -110914517 - AluJb SINE Alu -192 120 18 625 120 32 72 chr12 33368183 33368308 -110914181 + MLT1C LTR MaLR 14 133 -334 681 111 10 0 chr12 33368314 33368413 -110914076 - MSTB LTR MaLR -4 428 329 1838 169 60 62 chr12 33368413 33368871 -110913618 + LTR10B LTR ERV1 1 544 -3 1228 194 49 5 chr12 33368872 33369155 -110913334 - MSTB LTR MaLR -99 333 1 1419 217 65 19 chr12 33369155 33369478 -110913011 + MLT1C LTR MaLR 130 467 0 1887 152 3 17 chr12 33369525 33369662 -110912827 + AluJb SINE Alu 1 138 -164 2118 114 0 23 chr12 33369662 33369798 -110912691 + AluSx SINE Alu 1 139 -173 1842 122 66 0 chr12 33369798 33370085 -110912404 + AluSx SINE Alu 1 306 -6 2118 114 0 23 chr12 33370085 33370256 -110912233 + AluSx SINE Alu 139 301 -11 1887 152 3 17 chr12 33370256 33370415 -110912074 + AluJb SINE Alu 138 293 -9 1725 170 3 3 chr12 33370424 33370736 -110911753 + AluJb SINE Alu 1 312 0 762 190 0 0 chr12 33370748 33370890 -110911599 + FLAM_C SINE Alu 2 143 0 2022 89 3 0 chr12 33371050 33371363 -110911126 - AluY SINE Alu 0 314 1 2752 149 8 24 chr12 33371453 33371559 -110910930 - L1MA7 LINE L1 -22 6269 6163 1719 172 0 16 chr12 33371559 33371867 -110910622 - AluJo SINE Alu -9 303 1 2752 149 8 24 chr12 33371867 33372251 -110910238 - L1MA7 LINE L1 -128 6163 5787 399 274 44 15 chr12 33372292 33372427 -110910062 + MLT1A2 LTR MaLR 186 324 -50 1028 172 51 135 chr12 33372437 33372837 -110909652 - MER67C LTR ERV1 -338 372 2 1564 204 3 0 chr12 33373554 33373858 -110908631 + AluJo SINE Alu 1 305 -7 2206 78 34 0 chr12 33373859 33374154 -110908335 + AluSp SINE Alu 1 305 -8 2314 70 0 22 chr12 33374158 33374471 -110908018 + AluY SINE Alu 3 308 -3 2025 136 0 13 chr12 33374792 33375101 -110907388 + AluSx SINE Alu 1 305 -7 1579 149 24 42 chr12 33375225 33375356 -110907133 + AluJb SINE Alu 1 133 -174 2328 77 0 3 chr12 33375356 33375667 -110906822 + AluY SINE Alu 1 310 -1 1579 149 24 42 chr12 33375667 33375847 -110906642 + AluJb SINE Alu 133 307 0 2263 97 0 6 chr12 33376502 33376813 -110905676 + AluSx SINE Alu 1 309 -3 1235 120 5 0 chr12 33377121 33377312 -110905177 - AluSg/x SINE Alu 0 309 118 306 214 135 22 chr12 33377458 33377547 -110904942 + MER21A-int LTR ERV1 2502 4335 -545 281 169 0 78 chr12 33377547 33377624 -110904865 + MER21A-int LTR ERV1 3387 3457 -2489 * 547 225 35 53 chr12 33377618 33377787 -110904702 + MER21A-int LTR ERV1 644 809 -7007 521 328 30 26 chr12 33377872 33378174 -110904315 + MER21A-int LTR ERV1 646 948 -4006 261 304 57 52 chr12 33378363 33378557 -110903932 + MER21A-int LTR ERV1 1768 1912 -6487 610 298 25 47 chr12 33378764 33379083 -110903406 + MER21A-int LTR ERV1 2342 2653 -4023 2216 112 3 0 chr12 33379092 33379404 -110903085 + AluSp SINE Alu 1 313 0 265 357 26 26 chr12 33379694 33379963 -110902526 + MER21A-int LTR ERV1 3457 3725 -4901 2060 128 0 0 chr12 33380157 33380463 -110902026 + AluSc SINE Alu 1 306 -3 2155 124 0 0 chr12 33380468 33380774 -110901715 + AluSx SINE Alu 1 306 -6 1377 294 67 56 chr12 33380848 33381776 -110900713 + MER21A-int LTR ERV1 2897 4199 -1320 2038 135 0 6 chr12 33381776 33382088 -110900401 - AluSg SINE Alu 0 310 1 1377 294 67 56 chr12 33382088 33382265 -110900224 + MER21A-int LTR ERV1 4199 4373 -1146 2183 92 3 0 chr12 33382265 33382559 -110899930 + AluSx SINE Alu 1 295 -17 922 260 44 45 chr12 33382561 33382997 -110899492 + MER21A-int LTR ERV1 4560 5032 -2804 337 253 96 31 chr12 33383166 33383412 -110899077 + MER21A-int LTR ERV1 4733 4801 -1728 1825 146 3 7 chr12 33383413 33383708 -110898781 - AluSx SINE Alu -18 294 1 912 91 8 8 chr12 33383710 33383842 -110898647 - AluSp SINE Alu -181 132 1 939 295 49 46 chr12 33383844 33383961 -110898528 + MER21A-int LTR ERV1 4624 4739 -3017 3552 76 13 2 chr12 33383961 33384409 -110898080 - MLT2A2 LTR ERVL 0 453 1 939 295 49 46 chr12 33384409 33385027 -110897462 + MER21A-int LTR ERV1 4739 6072 -1684 2158 87 7 0 chr12 33385173 33385461 -110897028 - AluSc SINE Alu -19 290 1 1905 92 44 4 chr12 33385476 33385771 -110896718 - AluY SINE Alu 0 306 1 1068 139 12 0 chr12 33385797 33385963 -110896526 + MER21A-int LTR ERV1 7499 7666 -150 1070 76 0 0 chr12 33385967 33386098 -110896391 + AluSc SINE Alu 3 133 -176 1601 90 5 0 chr12 33386098 33386310 -110896179 + AluSq SINE Alu 1 213 -100 801 123 19 45 chr12 33386550 33386704 -110895785 - FRAM SINE Alu -18 158 9 860 252 38 106 chr12 33386726 33387199 -110895290 - MER34 LTR ERV1 0 542 102 914 169 17 11 chr12 33387234 33387246 -110895243 - AluJo/FRAM SINE Alu 0 312 302 1844 129 3 46 chr12 33387246 33387572 -110894917 - AluJb SINE Alu 0 312 1 914 169 17 11 chr12 33387572 33387736 -110894753 - AluJo/FRAM SINE Alu -10 302 135 379 266 11 0 chr12 33387743 33387837 -110894652 - MER34 LTR ERV1 -447 95 1 2027 64 79 7 chr12 33387902 33388182 -110894307 + AluY SINE Alu 1 300 -11 701 262 51 21 chr12 33388303 33388540 -110893949 + MLT2F LTR ERVL 1 244 -419 919 146 277 0 chr12 33388541 33388747 -110893742 + MER21A LTR ERV1 2 264 -667 2981 144 59 42 chr12 33388752 33388781 -110893708 + MER21A LTR ERV1 376 403 -528 2119 99 0 10 chr12 33388781 33389093 -110893396 + AluSx SINE Alu 3 312 0 2981 144 59 42 chr12 33389093 33389604 -110892885 + MER21A LTR ERV1 403 925 -6 807 240 128 62 chr12 33389645 33390003 -110892486 + MLT2F LTR ERVL 280 661 -2 330 237 254 7 chr12 33390057 33390196 -110892293 - MIR SINE MIR -27 235 63 3150 134 101 92 chr12 33390237 33390277 -110892212 - LTR8 LTR ERV1 0 691 653 1550 171 42 0 chr12 33390277 33390541 -110891948 - AluSx SINE Alu -37 275 1 3150 134 101 92 chr12 33390541 33390642 -110891847 - LTR8 LTR ERV1 -38 653 554 1718 122 0 0 chr12 33390642 33390889 -110891600 - AluSg SINE Alu -2 308 62 3150 134 101 92 chr12 33390889 33391430 -110891059 - LTR8 LTR ERV1 -137 554 2 339 242 11 0 chr12 33391524 33391615 -110890874 + MER34 LTR ERV1 1 92 -450 816 145 0 0 chr12 33391616 33391733 -110890756 + FLAM_C SINE Alu 1 117 -16 345 286 62 116 chr12 33391733 33392138 -110890351 + PABL_B LTR ERV1 2 384 -283 1086 233 74 19 chr12 33392150 33392459 -110890030 + PABL_B LTR ERV1 342 667 0 853 159 0 0 chr12 33392482 33392620 -110889869 + AluJb SINE Alu 132 269 -43 663 224 131 73 chr12 33392621 33393018 -110889471 + MER34 LTR ERV1 123 542 0 1368 71 0 112 chr12 33393036 33393281 -110889208 + AluSq SINE Alu 84 303 0 21 0 0 0 chr12 33393395 33393416 -110889073 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr12 33393625 33393658 -110888831 + AT_rich Low_complexity Low_complexity 1 33 0 237 241 31 93 chr12 33393860 33394022 -110888467 - L1ME4a LINE L1 -22 6083 1175 385 191 16 0 chr12 33394220 33394283 -110888206 - MER2 DNA MER2_type -2 343 280 1485 154 17 37 chr12 33394298 33394596 -110887893 + AluJb SINE Alu 5 296 -16 1598 151 22 14 chr12 33394598 33394734 -110887755 + AluJo SINE Alu 1 135 -177 2223 88 13 0 chr12 33394734 33395040 -110887449 + AluSq SINE Alu 1 310 -3 1598 151 22 14 chr12 33395040 33395181 -110887308 + AluJo SINE Alu 135 280 -32 2371 66 3 0 chr12 33395181 33395482 -110887007 - AluY SINE Alu -9 302 1 1719 122 0 8 chr12 33395536 33395799 -110886690 - MER2 DNA MER2_type -71 274 14 2480 74 0 0 chr12 33395878 33396189 -110886300 + AluY SINE Alu 1 311 0 422 274 112 88 chr12 33396303 33396600 -110885889 - L1M4 LINE L1 -1074 5072 4761 776 181 0 0 chr12 33396600 33396733 -110885756 - FLAM_C SINE Alu 0 133 1 422 274 112 88 chr12 33396733 33396855 -110885634 - L1M4 LINE L1 -1385 4761 4643 198 0 0 0 chr12 33397067 33397089 -110885400 + (TA)n Simple_repeat Simple_repeat 2 23 0 1296 95 0 0 chr12 33397089 33397257 -110885232 - AluSc SINE Alu -22 287 120 652 111 0 0 chr12 33397257 33397347 -110885142 + AluSp/q SINE Alu 213 302 -11 237 194 0 0 chr12 33397348 33397384 -110885105 + Alu SINE Alu 134 169 -134 1387 80 0 0 chr12 33397384 33397584 -110884905 + AluY SINE Alu 114 313 0 296 298 35 18 chr12 33397775 33397889 -110884600 - L1P LINE L1 -1130 5016 4901 808 149 6 77 chr12 33398738 33398906 -110883583 + MER61E LTR ERV1 1 156 -413 * 1006 174 48 48 chr12 33398894 33399101 -110883388 + LTR25 LTR ERV1 248 454 -340 1364 139 14 96 chr12 33399175 33399456 -110883033 + MER61E LTR ERV1 269 526 -43 1552 162 55 3 chr12 33399695 33399985 -110882504 - AluJb SINE Alu -7 305 1 274 220 70 20 chr12 33400016 33400116 -110882373 - LTR19A-int LTR ERV1 -576 4378 4274 3884 159 17 51 chr12 33400122 33400622 -110881867 - LTR19A-int LTR ERV1 -1281 5050 4535 1724 156 0 20 chr12 33400622 33400917 -110881572 + AluJo SINE Alu 12 300 -12 3884 159 17 51 chr12 33400917 33400977 -110881512 - LTR19A-int LTR ERV1 -1796 4535 4475 2217 96 0 6 chr12 33400977 33401289 -110881200 + AluY SINE Alu 1 310 -1 3884 159 17 51 chr12 33401289 33401538 -110880951 - LTR19A-int LTR ERV1 -1856 4475 4267 1394 152 22 40 chr12 33401613 33401890 -110880599 - AluJo SINE Alu -11 301 30 563 215 93 45 chr12 33401904 33402102 -110880387 + MER65-int LTR ERV1 351 1917 -4391 876 131 0 15 chr12 33402147 33402284 -110880205 - AluJo SINE Alu -177 135 1 419 274 40 74 chr12 33402293 33402468 -110880021 + MER65-int LTR ERV1 1932 2100 -4231 609 252 0 0 chr12 33402488 33402615 -110879874 + FLAM_A SINE Alu 4 130 -3 607 191 52 33 chr12 33402642 33402852 -110879637 + LTR57-int LTR ERVL 883 1096 -4247 * 710 176 51 33 chr12 33402648 33402927 -110879562 + MER65-int LTR ERV1 1186 3129 -3202 258 159 0 63 chr12 33402930 33402993 -110879496 + MER65-int LTR ERV1 2436 2494 -2377 710 153 0 0 chr12 33403057 33403168 -110879321 - AluSg/x SINE Alu -15 297 187 281 245 133 0 chr12 33403188 33403286 -110879203 - LTR19A-int LTR ERV1 -4698 1633 1523 1938 137 23 0 chr12 33403388 33403687 -110878802 - AluSx SINE Alu -5 307 2 51 31 0 0 chr12 33403806 33403871 -110878618 + AT_rich Low_complexity Low_complexity 1 65 0 279 181 48 48 chr12 33404206 33404311 -110878178 - LTR19A-int LTR ERV1 -4937 1394 1290 1342 192 58 31 chr12 33404654 33404946 -110877543 + AluJb SINE Alu 1 300 -2 252 257 88 68 chr12 33404953 33405101 -110877388 - LTR19A-int LTR ERV1 -4809 1522 1372 2204 87 0 10 chr12 33405585 33405885 -110876604 + AluSg SINE Alu 5 301 -9 262 229 16 0 chr12 33406015 33406076 -110876413 - MER34B LTR ERV1 0 565 504 276 289 37 37 chr12 33406170 33406305 -110876184 - LTR19A-int LTR ERV1 -7400 137 3 1787 153 20 7 chr12 33406371 33406671 -110875818 + AluJb SINE Alu 1 304 -8 1038 159 0 32 chr12 33407275 33407448 -110875041 - AluJb SINE Alu -10 302 134 1874 139 0 31 chr12 33407448 33407630 -110874859 - AluSx SINE Alu -3 309 140 2132 104 14 0 chr12 33407630 33407927 -110874562 - AluSg SINE Alu -9 301 1 1874 139 0 31 chr12 33407927 33408061 -110874428 - AluSx SINE Alu -172 140 3 1038 159 0 32 chr12 33408061 33408076 -110874413 - AluJb SINE Alu -178 134 120 2192 93 3 7 chr12 33408228 33408519 -110873970 + AluSg SINE Alu 1 290 -20 2592 161 56 99 chr12 33408664 33408772 -110873717 + MER21B LTR ERV1 1 112 -751 849 110 0 0 chr12 33408772 33408890 -110873599 - FLAM_C SINE Alu -15 118 1 2592 161 56 99 chr12 33408890 33409357 -110873132 + MER21B LTR ERV1 112 551 -312 1022 142 0 38 chr12 33409359 33409542 -110872947 + AluJo SINE Alu 93 268 -44 2534 51 0 0 chr12 33409553 33409864 -110872625 - AluY SINE Alu 0 311 1 1726 53 0 22 chr12 33409870 33410096 -110872393 - AluY SINE Alu -15 296 76 209 292 10 42 chr12 33410234 33410330 -110872159 + T-rich Low_complexity Low_complexity 4 96 0 * 258 257 54 0 chr12 33410260 33410334 -110872155 + CT-rich Low_complexity Low_complexity 3 80 0 332 87 0 0 chr12 33410400 33410446 -110872043 - MADE1 DNA Mariner -5 75 30 2132 97 7 3 chr12 33410447 33410745 -110871744 + AluSq SINE Alu 1 299 -14 2126 130 7 3 chr12 33411435 33411734 -110870755 + AluSp SINE Alu 1 300 -13 1458 183 18 1 chr12 33412119 33412518 -110869971 - LTR19A LTR ERV1 0 486 1 15559 77 7 12 chr12 33412518 33413336 -110869153 - HERVFH19I LTR ERV1 0 7719 6899 2107 103 0 38 chr12 33413336 33413652 -110868837 + AluSc SINE Alu 1 305 0 15559 77 7 12 chr12 33413652 33414871 -110867618 - HERVFH19I LTR ERV1 -820 6899 5690 3029 100 107 61 chr12 33414871 33415413 -110867076 - LTR4 LTR ERV1 0 596 30 1510 94 0 0 chr12 33415419 33415621 -110866868 - HERVFH19I LTR ERV1 -2026 5693 5492 2127 102 63 0 chr12 33415621 33415906 -110866583 + AluSg SINE Alu 1 303 -7 1008 183 11 6 chr12 33415912 33416087 -110866402 + FRAM SINE Alu 1 169 -7 560 143 11 11 chr12 33416097 33416188 -110866301 + MLT1A2 LTR MaLR 284 374 0 2104 142 0 0 chr12 33416275 33416570 -110865919 - AluSx SINE Alu -17 295 1 315 275 59 77 chr12 33416890 33417038 -110865451 - L1MEc LINE L1 -4620 1776 1627 1740 121 0 0 chr12 33417038 33417277 -110865212 + AluSg SINE Alu 1 239 -71 315 275 59 77 chr12 33417277 33417430 -110865059 - L1MEc LINE L1 -4769 1627 1481 2241 91 0 20 chr12 33417430 33417728 -110864761 + AluSx SINE Alu 6 297 -15 315 275 59 77 chr12 33417728 33417829 -110864660 - L1MEc LINE L1 -4915 1481 1380 362 249 153 84 chr12 33417879 33417977 -110864512 + L1ME LINE L1 2429 2519 -3627 2223 116 10 0 chr12 33417977 33418279 -110864210 + AluSp SINE Alu 1 305 -8 362 249 153 84 chr12 33418279 33418526 -110863963 + L1ME LINE L1 2519 2798 -3348 1071 175 53 5 chr12 33418527 33418733 -110863756 - Tigger1 DNA MER2_type -1 2417 2202 900 152 13 25 chr12 33418722 33418880 -110863609 - Tigger1 DNA MER2_type -2261 157 2 * 341 244 106 74 chr12 33418944 33419004 -110863485 + L1ME LINE L1 2900 2957 -3189 2578 37 0 0 chr12 33419004 33419300 -110863189 + AluY SINE Alu 1 296 -15 341 244 106 74 chr12 33419300 33419362 -110863127 + L1ME LINE L1 2957 3016 -3130 2228 109 0 3 chr12 33419362 33419675 -110862814 + AluSx SINE Alu 1 312 0 341 244 106 74 chr12 33419675 33419768 -110862721 + L1ME LINE L1 3016 3123 -3023 578 211 14 16 chr12 33419803 33419950 -110862539 + L1ME LINE L1 5305 5456 -698 491 205 85 2 chr12 33419979 33420118 -110862371 + L1ME1 LINE L1 5411 5559 -605 963 246 85 58 chr12 33420123 33420187 -110862302 - MSTC LTR MaLR -3 425 364 2509 72 0 3 chr12 33420187 33420494 -110861995 - AluY SINE Alu -5 306 1 2216 102 17 0 chr12 33420494 33420786 -110861703 - AluSx SINE Alu -13 299 3 963 246 85 58 chr12 33420786 33421051 -110861438 - MSTC LTR MaLR -356 72 81 1825 181 0 0 chr12 33421051 33421344 -110861145 - AluJo SINE Alu -19 293 1 963 246 85 58 chr12 33421344 33421412 -110861077 - MSTC LTR MaLR -347 81 16 1166 173 50 167 chr12 33421415 33421778 -110860711 + L1ME1 LINE L1 5550 5845 -321 1973 131 41 0 chr12 33421778 33422069 -110860420 + AluSq SINE Alu 1 303 -10 1166 173 50 167 chr12 33422069 33422185 -110860304 + L1ME1 LINE L1 5845 5973 -193 2191 117 7 0 chr12 33422952 33423405 -110859084 - AluSx SINE Alu 0 455 1 201 138 0 0 chr12 33423430 33423459 -110859030 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 396 208 13 0 chr12 33423513 33423590 -110858899 + MER58 DNA MER1_type 31 108 -233 240 147 73 0 chr12 33423714 33423782 -110858707 + CT-rich Low_complexity Low_complexity 3 75 0 1358 233 81 40 chr12 33424202 33424416 -110858073 - HAL1 LINE L1 -982 1525 1321 2181 116 3 3 chr12 33424416 33424719 -110857770 - AluSx SINE Alu -9 303 1 1358 233 81 40 chr12 33424719 33425023 -110857466 - HAL1 LINE L1 -1186 1321 986 926 97 0 0 chr12 33425545 33425659 -110856830 - AluSq/x SINE Alu -198 114 1 1992 107 42 7 chr12 33425659 33425948 -110856541 - AluSc SINE Alu -10 299 1 882 284 90 35 chr12 33425991 33426445 -110856044 - HAL1 LINE L1 -1553 954 476 300 319 22 22 chr12 33426505 33426643 -110855846 - HAL1 LINE L1 -2226 281 144 2240 109 6 6 chr12 33426647 33426959 -110855530 + AluSx SINE Alu 1 312 0 270 95 0 0 chr12 33426963 33427005 -110855484 + THE1C-int LTR MaLR 1539 1580 0 2254 147 16 21 chr12 33427007 33427382 -110855107 + THE1C LTR MaLR 3 375 0 2010 134 0 7 chr12 33427426 33427729 -110854760 + AluSx SINE Alu 1 301 0 689 142 14 71 chr12 33427733 33427874 -110854615 + FLAM_C SINE Alu 1 133 0 2134 87 31 3 chr12 33427959 33428246 -110854243 - AluSg SINE Alu -15 295 1 450 167 13 26 chr12 33428638 33428716 -110853773 + MER2 DNA MER2_type 267 343 -2 330 26 0 0 chr12 33428716 33428755 -110853734 + (TG)n Simple_repeat Simple_repeat 2 40 0 1882 154 3 14 chr12 33428805 33429098 -110853391 - AluJo SINE Alu -22 290 1 2225 123 113 38 chr12 33429117 33429168 -110853321 - MSTA LTR MaLR 0 428 382 2251 109 3 0 chr12 33429168 33429462 -110853027 - AluSp SINE Alu -9 304 10 2225 123 113 38 chr12 33429462 33429808 -110852681 - MSTA LTR MaLR -46 382 1 26 0 0 0 chr12 33429835 33429861 -110852628 + AT_rich Low_complexity Low_complexity 1 26 0 261 295 0 0 chr12 33429883 33429961 -110852528 - L1M4 LINE L1 -3216 2930 2853 2457 81 7 0 chr12 33429975 33430273 -110852216 - AluSq SINE Alu -13 300 1 530 274 99 31 chr12 33430603 33430826 -110851663 - MIR SINE MIR -2 260 23 248 51 0 26 chr12 33431445 33431484 -110851005 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1983 138 0 3 chr12 33431486 33431768 -110850721 - AluSx SINE Alu -31 281 1 542 150 17 83 chr12 33431944 33431992 -110850497 - L1MB4 LINE L1 0 6180 6130 2471 60 0 10 chr12 33431992 33432158 -110850331 - AluY SINE Alu -13 298 135 2464 50 3 14 chr12 33432158 33432455 -110850034 - AluY SINE Alu -17 294 1 2471 60 0 10 chr12 33432455 33432589 -110849900 - AluY SINE Alu -176 135 1 542 150 17 83 chr12 33432589 33432660 -110849829 - L1MB4 LINE L1 -50 6130 6069 657 285 61 123 chr12 33432661 33433117 -110849372 - ERVL LTR ERVL -3431 2333 1906 1499 224 52 12 chr12 33433442 33433786 -110848703 + MLT1A2 LTR MaLR 17 374 0 475 82 14 41 chr12 33434094 33434167 -110848322 + L1M3 LINE L1 5682 5752 -428 3209 97 30 49 chr12 33434248 33434755 -110847734 - LOR1a LTR ERV1 0 497 1 252 304 20 39 chr12 33435337 33435439 -110847050 - L2 LINE L2 -10 3303 3204 318 223 43 10 chr12 33436265 33436398 -110846091 + L1MC4a LINE L1 5335 5472 -698 3112 47 8 3 chr12 33436483 33436865 -110845624 - L1PA8 LINE L1 -1 6171 5788 827 207 141 75 chr12 33436894 33437242 -110845247 + LTR33A LTR ERVL 3 373 -150 1627 163 0 66 chr12 33437245 33437431 -110845058 - AluSq SINE Alu -14 299 141 2520 62 0 13 chr12 33437431 33437739 -110844750 - AluY SINE Alu -7 304 1 1627 163 0 66 chr12 33437739 33437872 -110844617 - AluSq SINE Alu -172 141 1 21 0 0 0 chr12 33437877 33437898 -110844591 + AT_rich Low_complexity Low_complexity 1 21 0 517 240 174 15 chr12 33437941 33438137 -110844352 + L1MC4a LINE L1 5685 5911 -1897 2106 109 0 37 chr12 33438162 33438483 -110844006 + AluSg SINE Alu 1 309 -1 456 176 0 0 chr12 33438489 33438563 -110843926 + AluS SINE Alu 1 74 -238 1850 89 150 231 chr12 33438565 33439191 -110843298 - LTR12 LTR ERV1 -135 2021 57 232 250 0 0 chr12 33439195 33439247 -110843242 - LTR30 LTR ERV1 -670 52 1 1353 179 8 0 chr12 33439247 33439482 -110843007 + AluJb SINE Alu 71 307 -5 503 210 75 70 chr12 33439520 33439706 -110842783 + MIR SINE MIR 11 197 -65 890 227 9 70 chr12 33439707 33439760 -110842729 + MER58A DNA MER1_type 1 56 -2364 2262 101 0 0 chr12 33439760 33440046 -110842443 - AluSc SINE Alu -22 287 2 890 227 9 70 chr12 33440046 33440221 -110842268 + MER58A DNA MER1_type 56 215 -9 286 240 0 27 chr12 33440228 33440303 -110842186 + MIR SINE MIR 189 261 -1 2319 101 0 0 chr12 33440449 33440746 -110841743 + AluSx SINE Alu 1 297 -15 41 36 0 0 chr12 33440754 33440809 -110841680 + AT_rich Low_complexity Low_complexity 1 55 0 2250 115 0 3 chr12 33440879 33441184 -110841305 + AluSq SINE Alu 1 304 -9 320 226 199 77 chr12 33441498 33441679 -110840810 - MLT1H LTR MaLR -3 552 350 5011 150 32 16 chr12 33441839 33442409 -110840080 + MER4D LTR ERV1 1 591 -312 2540 60 3 22 chr12 33442409 33442725 -110839764 - AluY SINE Alu -1 310 1 5011 150 32 16 chr12 33442725 33443035 -110839454 + MER4D LTR ERV1 591 895 -8 377 192 173 77 chr12 33444034 33444190 -110838299 - MLT1H LTR MaLR -378 171 1 913 260 63 85 chr12 33444451 33445050 -110837439 + PABL_B LTR ERV1 82 667 0 371 209 36 45 chr12 33445276 33445386 -110837103 - MER34 LTR ERV1 -3 539 431 2473 72 3 19 chr12 33445394 33445712 -110836777 - AluSp SINE Alu 0 313 1 2311 52 3 24 chr12 33445727 33446039 -110836450 - AluY SINE Alu 0 306 1 304 252 58 0 chr12 33446041 33446144 -110836345 - MER34B LTR ERV1 -98 467 359 25 0 0 0 chr12 33446228 33446253 -110836236 + AT_rich Low_complexity Low_complexity 1 25 0 834 156 0 8 chr12 33446253 33446381 -110836108 - FLAM_C SINE Alu -16 127 1 333 308 19 0 chr12 33446563 33446667 -110835822 + CT-rich Low_complexity Low_complexity 2 107 0 260 272 63 7 chr12 33447393 33447496 -110834993 + LTR23 LTR ERV1 331 423 -14 1063 169 25 108 chr12 33447499 33447766 -110834723 - MER34B LTR ERV1 -197 368 123 2404 68 0 17 chr12 33447766 33448061 -110834428 + AluY SINE Alu 3 292 -19 1063 169 25 108 chr12 33448061 33448072 -110834417 - MER34B LTR ERV1 -442 123 113 938 182 6 0 chr12 33448075 33448240 -110834249 + AluJb SINE Alu 141 306 -6 475 202 11 51 chr12 33448240 33448307 -110834182 - MER34 LTR ERV1 -404 138 96 4068 189 50 18 chr12 33448307 33449106 -110833383 + LTR1B LTR ERV1 1 825 -1 475 202 11 51 chr12 33449106 33449189 -110833300 - MER34 LTR ERV1 -446 96 11 1186 151 0 11 chr12 33449584 33449769 -110832720 + AluJb SINE Alu 1 183 -129 3115 160 22 61 chr12 33449771 33450408 -110832081 + LTR9 LTR ERV1 1 612 0 239 204 0 0 chr12 33450408 33450462 -110832027 + AluSg/x SINE Alu 182 235 -67 2313 104 10 0 chr12 33450681 33450980 -110831509 + AluSx SINE Alu 1 302 -10 2432 77 0 10 chr12 33450981 33451291 -110831198 + AluY SINE Alu 1 307 -4 2511 68 0 0 chr12 33451293 33451600 -110830889 + AluY SINE Alu 1 307 -4 4697 181 24 23 chr12 33451789 33452649 -110829840 + MER21B LTR ERV1 1 861 -2 279 0 0 0 chr12 33452776 33452807 -110829682 + (TG)n Simple_repeat Simple_repeat 2 32 0 723 183 124 112 chr12 33452975 33453331 -110829158 - LTR37A LTR ERV1 -64 362 3 1746 161 40 7 chr12 33453393 33453692 -110828797 + AluJb SINE Alu 1 309 -3 360 222 111 16 chr12 33453841 33453967 -110828522 + MIR SINE MIR 22 159 -103 2198 110 0 0 chr12 33453989 33454302 -110828187 + AluSx SINE Alu 1 313 0 949 185 42 16 chr12 33454304 33454493 -110827996 + MER93b LTR ERV1 12 205 -168 2433 202 34 45 chr12 33454498 33454652 -110827837 - L1M4 LINE L1 -1252 4894 4740 2089 113 38 0 chr12 33454652 33454943 -110827546 - AluSx SINE Alu -10 302 1 2433 202 34 45 chr12 33454943 33455129 -110827360 - L1M4 LINE L1 -1406 4740 4553 1757 164 0 53 chr12 33455129 33455306 -110827183 - AluJo SINE Alu -11 301 147 2171 121 0 16 chr12 33455306 33455620 -110826869 - AluSx SINE Alu -3 309 1 1757 164 0 53 chr12 33455620 33455760 -110826729 - AluJo SINE Alu -165 147 1 2433 202 34 45 chr12 33455760 33456057 -110826432 - L1M4 LINE L1 -1593 4553 4263 2344 91 0 3 chr12 33456126 33456424 -110826065 - AluSg1 SINE Alu -12 297 1 866 143 0 8 chr12 33456497 33456630 -110825859 - FLAM_A SINE Alu 0 133 2 311 301 48 6 chr12 33456944 33457110 -110825379 + L1MC/D LINE L1 4858 5030 -1116 2196 102 6 38 chr12 33457136 33457449 -110825040 + AluSx SINE Alu 1 303 -9 263 71 24 0 chr12 33457461 33457503 -110824986 - MADE1 DNA Mariner -36 44 2 1975 233 23 30 chr12 33457503 33458166 -110824323 + L1MC/D LINE L1 5038 5697 -753 2348 51 0 64 chr12 33458176 33458489 -110824000 - AluY SINE Alu -18 293 1 1305 92 0 0 chr12 33458491 33458654 -110823835 - AluSg/x SINE Alu -6 304 142 1693 176 3 23 chr12 33458698 33459005 -110823484 - AluJo SINE Alu -11 301 1 2530 74 0 3 chr12 33459109 33459419 -110823070 - AluY SINE Alu -2 309 1 21 36 0 0 chr12 33459515 33459543 -110822946 + AT_rich Low_complexity Low_complexity 1 28 0 612 221 32 11 chr12 33459595 33459785 -110822704 + L1ME3 LINE L1 5119 5312 -834 2150 126 7 7 chr12 33459785 33460095 -110822394 + AluSx SINE Alu 1 310 -2 1226 290 47 34 chr12 33460098 33460739 -110821750 + L1ME3 LINE L1 5303 5951 -211 439 183 39 19 chr12 33461003 33461107 -110821382 - MER5B DNA MER1_type -5 173 68 2597 193 30 8 chr12 33461195 33461724 -110820765 - L1MC4a LINE L1 0 7808 7268 2568 106 19 3 chr12 33461922 33462291 -110820198 + THE1C LTR MaLR 1 375 0 886 213 46 0 chr12 33462499 33462696 -110819793 - L1MD3 LINE L1 -8 7987 7782 2260 85 0 4 chr12 33462746 33463028 -110819461 + AluSg SINE Alu 7 316 0 196 69 0 0 chr12 33463028 33463057 -110819432 + (TAAA)n Simple_repeat Simple_repeat 3 180 0 302 217 239 94 chr12 33463082 33463126 -110819363 - MLT1H LTR MaLR -341 208 172 2294 91 0 16 chr12 33463126 33463143 -110819346 - AluSq SINE Alu -11 302 286 250 33 0 0 chr12 33463143 33463173 -110819316 + (TTTG)n Simple_repeat Simple_repeat 2 104 0 2294 91 0 16 chr12 33463173 33463462 -110819027 - AluSq SINE Alu -27 286 1 302 217 239 94 chr12 33463462 33463555 -110818934 - MLT1H LTR MaLR -377 172 51 1003 211 53 94 chr12 33463897 33463993 -110818496 - Charlie2 DNA MER1_type -93 2769 2671 2141 108 0 4 chr12 33463993 33464272 -110818217 + AluSg SINE Alu 1 278 -32 180 0 0 0 chr12 33464272 33464292 -110818197 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1003 211 53 94 chr12 33464292 33464587 -110817902 - Charlie2 DNA MER1_type -190 2672 2400 2443 73 3 0 chr12 33464587 33464887 -110817602 - AluY SINE Alu -10 301 1 1003 211 53 94 chr12 33464887 33465005 -110817484 - Charlie2 DNA MER1_type -462 2400 2279 2305 102 0 0 chr12 33465245 33465538 -110816951 + AluSg SINE Alu 1 293 -17 2223 106 20 0 chr12 33465823 33466115 -110816374 + AluSq SINE Alu 3 300 -13 21 0 0 0 chr12 33466201 33466222 -110816267 + AT_rich Low_complexity Low_complexity 1 21 0 256 200 290 0 chr12 33466951 33467051 -110815438 - Charlie2 DNA MER1_type -587 2275 2147 2268 95 0 3 chr12 33467069 33467381 -110815108 + AluSx SINE Alu 1 311 0 2222 193 38 39 chr12 33467386 33467964 -110814525 + MER92B LTR ERV1 1 635 -1 1157 196 20 12 chr12 33467965 33468215 -110814274 - Charlie2 DNA MER1_type -754 2108 1857 410 283 142 31 chr12 33468219 33468445 -110814044 - Charlie2 DNA MER1_type -2537 325 75 263 173 0 0 chr12 33469109 33469161 -110813328 - L1MB8 LINE L1 -5 6173 6122 741 198 117 25 chr12 33469193 33469390 -110813099 - L1MB4 LINE L1 -6 6174 5960 3922 113 11 0 chr12 33469390 33469938 -110812551 - MER41A LTR ERV1 0 554 1 8906 100 29 7 chr12 33469938 33470103 -110812386 - MER41A-int LTR ERV1 -2 5944 5784 2078 113 0 7 chr12 33470103 33470411 -110812078 + AluSx SINE Alu 1 306 0 8906 100 29 7 chr12 33470411 33471496 -110810993 - MER41A-int LTR ERV1 -162 5784 4666 7985 127 50 32 chr12 33471494 33472899 -110809590 - MER41A-int LTR ERV1 -1249 3766 2333 * 2034 161 0 0 chr12 33472899 33473209 -110809280 + AluSx SINE Alu 1 310 -2 7985 127 50 32 chr12 33473209 33473253 -110809236 - MER41A-int LTR ERV1 -2682 2333 2291 5111 130 58 3 chr12 33473253 33474013 -110808476 - MER41A-int LTR ERV1 -5144 802 1 1802 64 39 0 chr12 33474098 33474331 -110808158 - MER41A LTR ERV1 0 554 313 2351 74 13 0 chr12 33474331 33474629 -110807860 + AluY SINE Alu 1 302 -9 683 125 265 0 chr12 33474686 33474822 -110807667 - AluSg/x SINE Alu -9 300 129 2224 117 7 0 chr12 33474827 33475127 -110807362 - AluSp SINE Alu -11 302 1 288 0 0 0 chr12 33475708 33475740 -110806749 + (CAT)n Simple_repeat Simple_repeat 2 33 0 838 251 54 63 chr12 33476233 33476503 -110805986 + LTR40b LTR ERVL 131 399 -63 2303 103 0 3 chr12 33476503 33476803 -110805686 + AluSx SINE Alu 1 299 -13 838 251 54 63 chr12 33476803 33476866 -110805623 + LTR40b LTR ERVL 399 461 -1 312 176 0 108 chr12 33477226 33477328 -110805161 + L1MC5 LINE L1 6710 6800 -1161 2070 122 3 24 chr12 33477341 33477696 -110804793 - AluSx SINE Alu 0 312 1 963 129 14 7 chr12 33477740 33477880 -110804609 - AluSq/x SINE Alu -172 141 1 1114 228 91 51 chr12 33477902 33477921 -110804568 - MER92A LTR ERV1 -47 365 348 2058 104 119 6 chr12 33477921 33478258 -110804231 - THE1C LTR MaLR 0 375 1 1114 228 91 51 chr12 33478258 33478589 -110803900 - MER92A LTR ERV1 -64 348 1 2200 125 0 3 chr12 33478598 33478909 -110803580 + AluSg SINE Alu 1 310 0 248 214 0 0 chr12 33478915 33478957 -110803532 + L1MC4 LINE L1 6853 6894 -1148 914 204 0 0 chr12 33479129 33479291 -110803198 - FRAM SINE Alu -15 161 1 353 297 0 7 chr12 33479391 33479529 -110802960 + L1M4 LINE L1 4408 4544 -1602 2292 58 0 105 chr12 33480070 33480412 -110802077 + AluSc SINE Alu 1 306 -3 414 247 69 57 chr12 33480599 33480931 -110801558 + L1M4 LINE L1 4997 5332 -814 508 85 0 73 chr12 33480978 33481060 -110801429 + AluSg SINE Alu 5 80 -230 1268 209 4 0 chr12 33481116 33481346 -110801143 - AluJo SINE Alu -68 244 14 1154 74 6 0 chr12 33481358 33481520 -110800969 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 383 135 0 0 chr12 33481522 33481574 -110800915 - AluJ/FRAM SINE Alu -21 281 230 882 21 0 0 chr12 33481578 33481675 -110800814 + AluYb8 SINE Alu 154 250 -68 2125 111 10 10 chr12 33481706 33482003 -110800486 + AluSg SINE Alu 1 297 -13 429 73 13 265 chr12 33482062 33482151 -110800338 - Charlie5 DNA MER1_type -2 2583 2580 1575 161 15 96 chr12 33482151 33482475 -110800014 + AluJo SINE Alu 1 298 -14 429 73 13 265 chr12 33482475 33482536 -110799953 - Charlie5 DNA MER1_type -5 2580 2505 1814 166 0 33 chr12 33482600 33482907 -110799582 - AluJo SINE Alu -15 297 1 254 289 13 13 chr12 33482928 33483004 -110799485 + MIR SINE MIR 4 79 -183 545 242 45 13 chr12 33483016 33483173 -110799316 - MIR SINE MIR -66 196 35 1867 170 73 3 chr12 33483523 33483864 -110798625 + MLT1A1 LTR MaLR 1 365 0 2123 84 0 75 chr12 33484213 33484545 -110797944 + AluSx SINE Alu 1 307 -5 2444 65 0 36 chr12 33484548 33484857 -110797632 + AluY SINE Alu 1 298 -13 2059 123 9 25 chr12 33484928 33485244 -110797245 - AluSx SINE Alu -1 311 1 2234 83 24 3 chr12 33485650 33485939 -110796550 + AluSc SINE Alu 1 295 -14 2050 106 0 14 chr12 33485949 33486233 -110796256 + AluSx SINE Alu 33 312 0 749 256 96 41 chr12 33486718 33487011 -110795478 + Charlie2 DNA MER1_type 1 309 -2553 1965 133 30 0 chr12 33487095 33487405 -110795084 + AluSc SINE Alu 1 318 0 279 0 0 0 chr12 33487566 33487597 -110794892 + (CA)n Simple_repeat Simple_repeat 2 32 0 2138 123 0 43 chr12 33487740 33488066 -110794423 - AluSx SINE Alu 0 312 1 851 190 41 10 chr12 33489111 33489317 -110793172 + MER61D LTR ERV1 338 484 -17 921 156 0 0 chr12 33489415 33489550 -110792939 + AluSq/x SINE Alu 1 135 -177 1620 172 61 11 chr12 33489550 33489829 -110792660 + AluSx SINE Alu 1 293 -19 1879 158 3 13 chr12 33489975 33490273 -110792216 - AluSx SINE Alu -17 295 1 6409 150 5 24 chr12 33490286 33491400 -110791089 - L1PB2 LINE L1 0 6151 5018 2133 136 0 0 chr12 33491400 33491695 -110790794 - AluSg SINE Alu -15 295 1 6409 150 5 24 chr12 33491695 33491738 -110790751 - L1PB2 LINE L1 -1133 5018 4976 2272 89 17 0 chr12 33491738 33492040 -110790449 - AluSx SINE Alu 0 312 6 6409 150 5 24 chr12 33492040 33492577 -110789912 - L1PB2 LINE L1 -1175 4976 4506 2138 124 0 0 chr12 33492577 33492894 -110789595 - AluSx SINE Alu 0 312 1 6409 150 5 24 chr12 33492894 33493269 -110789220 - L1PB2 LINE L1 -1645 4506 4125 515 273 67 64 chr12 33493600 33493856 -110788633 + MER68 LTR ERV1 148 447 -158 1091 183 50 5 chr12 33493869 33494071 -110788418 - MER61E LTR ERV1 -4 565 355 2185 106 3 10 chr12 33494072 33494396 -110788093 - AluSq SINE Alu 0 313 1 209 57 29 0 chr12 33494400 33494435 -110788054 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2227 106 0 0 chr12 33494437 33494719 -110787770 - AluSx SINE Alu -30 282 1 6018 112 28 50 chr12 33494839 33494946 -110787543 + Tigger1 DNA MER2_type 1075 1183 -1235 2099 148 0 0 chr12 33494946 33495249 -110787240 + AluSx SINE Alu 1 303 -9 6018 112 28 50 chr12 33495249 33495352 -110787137 + Tigger1 DNA MER2_type 1183 1287 -1131 1800 166 3 7 chr12 33495352 33495641 -110786848 - AluJb SINE Alu -24 288 1 6018 112 28 50 chr12 33495641 33496418 -110786071 + Tigger1 DNA MER2_type 1287 2042 -376 6227 149 37 27 chr12 33496420 33496728 -110785761 + L1PB2 LINE L1 4019 4323 -1828 305 62 21 0 chr12 33496728 33496776 -110785713 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6227 149 37 27 chr12 33496776 33497048 -110785441 + L1PB2 LINE L1 4323 4591 -1560 2644 52 0 0 chr12 33497048 33497355 -110785134 + AluY SINE Alu 1 307 -4 6227 149 37 27 chr12 33497355 33498881 -110783608 + L1PB2 LINE L1 4591 6148 -3 2040 159 15 40 chr12 33498883 33499278 -110783211 + Tigger1 DNA MER2_type 2019 2403 -15 2198 114 0 10 chr12 33499349 33499647 -110782842 - AluSx SINE Alu -15 297 3 2515 65 0 0 chr12 33499664 33499956 -110782533 - AluSq SINE Alu -21 292 1 1650 168 33 7 chr12 33500245 33500561 -110781928 + AluSx SINE Alu 3 325 0 362 288 69 56 chr12 33500892 33501198 -110781291 + MER68 LTR ERV1 181 490 -72 1786 156 58 0 chr12 33502489 33502784 -110779705 + AluJb SINE Alu 1 312 0 2334 114 0 9 chr12 33503362 33503677 -110778812 + AluSx SINE Alu 1 312 0 645 263 151 64 chr12 33503971 33504009 -110778480 - MLT1H LTR MaLR 0 549 516 1761 125 18 14 chr12 33504009 33504329 -110778160 + AluSg SINE Alu 1 321 0 645 263 151 64 chr12 33504329 33504680 -110777809 - MLT1H LTR MaLR -33 516 125 2077 89 44 0 chr12 33504704 33504998 -110777491 + AluY SINE Alu 1 306 0 2271 90 7 0 chr12 33505013 33505302 -110777187 + AluSc SINE Alu 1 291 -18 911 295 50 45 chr12 33505448 33506066 -110776423 - HERV3 LTR ERV1 -1684 6072 5459 3550 76 13 2 chr12 33506066 33506514 -110775975 + MLT2A2 LTR ERVL 1 453 0 911 295 50 45 chr12 33506514 33506626 -110775863 - HERV3 LTR ERV1 -2297 5459 4624 970 91 8 8 chr12 33506634 33506766 -110775723 + AluSp SINE Alu 1 132 -181 2015 139 3 7 chr12 33506768 33507063 -110775426 + AluSx SINE Alu 1 294 -18 321 253 96 31 chr12 33507064 33507310 -110775179 - HERV3 LTR ERV1 -1728 5432 4733 916 259 44 45 chr12 33507479 33507915 -110774574 - HERV3 LTR ERV1 -2804 4952 4560 2070 105 10 7 chr12 33507917 33508211 -110774278 - AluSx SINE Alu -17 295 1 1337 292 68 56 chr12 33508211 33508388 -110774101 - HERV3 LTR ERV1 -1146 3808 3634 2173 131 0 6 chr12 33508388 33508700 -110773789 + AluSg SINE Alu 1 310 0 1337 292 68 56 chr12 33508700 33509628 -110772861 - HERV3 LTR ERV1 -1320 3634 2897 2264 128 0 0 chr12 33509702 33510008 -110772481 - AluSx SINE Alu -6 306 1 2178 128 0 0 chr12 33510013 33510319 -110772170 - AluSc SINE Alu -3 306 1 269 321 24 24 chr12 33510513 33510782 -110771707 - HERV3 LTR ERV1 -4901 3725 2640 2343 112 3 0 chr12 33511073 33511385 -110771104 - AluSp SINE Alu 0 313 1 607 298 25 47 chr12 33511394 33511713 -110770776 - HERV3 LTR ERV1 -4023 2653 2342 252 393 0 0 chr12 33511922 33512067 -110770422 - HERV3 LTR ERV1 -6487 1912 1768 517 328 30 26 chr12 33512303 33512605 -110769884 - HERV3 LTR ERV1 -4006 948 646 2450 182 83 122 chr12 33512690 33513532 -110768957 - HERV3 LTR ERV1 -7007 809 1 1441 144 87 27 chr12 33513532 33513812 -110768677 - MER51A LTR ERV1 0 634 372 2404 97 3 0 chr12 33513812 33514123 -110768366 - AluSp SINE Alu -1 312 1 1441 144 87 27 chr12 33514123 33514243 -110768246 - MER51A LTR ERV1 -262 372 1 780 182 8 0 chr12 33514290 33514422 -110768067 + FLAM_A SINE Alu 1 133 0 2132 114 0 0 chr12 33514923 33515224 -110767265 + AluSg SINE Alu 1 301 0 761 128 30 30 chr12 33515270 33515403 -110767086 + AluJb SINE Alu 2 134 -178 2392 98 0 0 chr12 33515533 33515830 -110766659 - AluSg SINE Alu -13 297 1 3820 77 18 18 chr12 33516108 33516777 -110765712 + MER11A LTR ERVK 1 737 -499 2306 69 5 161 chr12 33517417 33517852 -110764637 + MER11A LTR ERVK 900 1266 0 2043 118 31 0 chr12 33518378 33518666 -110763823 + AluSx SINE Alu 1 297 -15 1793 175 3 3 chr12 33518676 33518973 -110763516 + AluJb SINE Alu 6 302 -10 2180 134 57 119 chr12 33519045 33519641 -110762848 + LTR34 LTR ERV1 1 559 -140 2220 126 35 16 chr12 33519641 33520007 -110762482 - THE1C LTR MaLR 0 375 3 684 191 22 51 chr12 33520008 33520108 -110762381 + Charlie4 DNA MER1_type 1789 1883 -78 1985 121 62 3 chr12 33520108 33520398 -110762091 + AluSx SINE Alu 1 307 -5 684 191 22 51 chr12 33520398 33520475 -110762014 + Charlie4 DNA MER1_type 1883 1961 0 446 191 95 137 chr12 33520591 33520759 -110761730 - MLT1J LTR MaLR -314 197 37 2047 141 3 0 chr12 33520778 33521075 -110761414 + AluSx SINE Alu 1 298 -14 2255 93 0 3 chr12 33521255 33521546 -110760943 + AluSg1 SINE Alu 1 290 -19 478 304 33 16 chr12 33522195 33522379 -110760110 - MIR SINE MIR -29 233 47 1462 194 4 4 chr12 33522838 33523086 -110759403 + AluJb SINE Alu 1 248 -64 745 165 0 0 chr12 33523313 33523428 -110759061 + FLAM_C SINE Alu 1 115 -18 32 26 0 0 chr12 33523434 33523473 -110759016 + AT_rich Low_complexity Low_complexity 1 39 0 382 292 28 0 chr12 33523894 33524038 -110758451 + G-rich Low_complexity Low_complexity 6 153 0 1905 174 74 56 chr12 33524530 33524613 -110757876 - LTR10A LTR ERV1 0 548 468 2218 57 68 0 chr12 33524613 33524893 -110757596 - AluY SINE Alu -11 300 2 1905 174 74 56 chr12 33524893 33525293 -110757196 - LTR10A LTR ERV1 -80 468 1 225 0 0 0 chr12 33525338 33525363 -110757126 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1578 136 46 50 chr12 33525367 33525647 -110756842 - AluJb SINE Alu -30 282 4 1793 141 7 4 chr12 33525657 33525927 -110756562 - AluSx SINE Alu -7 305 35 1227 152 70 152 chr12 33525927 33526415 -110756074 + LTR7 LTR ERV1 3 450 0 282 122 0 0 chr12 33526415 33526456 -110756033 - AluSx SINE Alu -262 41 1 2454 47 3 20 chr12 33526480 33526779 -110755710 + AluY SINE Alu 1 294 -17 1288 176 43 81 chr12 33526997 33527393 -110755096 - LTR24B LTR ERV1 -1 523 188 636 237 40 12 chr12 33527576 33527749 -110754740 + MER5A DNA MER1_type 12 189 0 21 0 0 0 chr12 33528069 33528090 -110754399 + GC_rich Low_complexity Low_complexity 1 21 0 25 102 0 0 chr12 33528167 33528255 -110754234 + GC_rich Low_complexity Low_complexity 1 88 0 673 254 110 13 chr12 33529844 33530080 -110752409 + MIR SINE MIR 3 261 -1 1657 148 60 54 chr12 33530473 33530771 -110751718 + AluSx SINE Alu 1 300 -12 1691 119 123 11 chr12 33531348 33531609 -110750880 + AluSg SINE Alu 1 290 -20 1966 84 80 7 chr12 33531616 33531891 -110750598 + AluSc SINE Alu 1 295 -14 3013 197 115 21 chr12 33532097 33532661 -110749828 - L1MB8 LINE L1 -18 6160 5492 2552 116 36 27 chr12 33532661 33533110 -110749379 - L1PA13 LINE L1 -1 6162 5710 3013 197 115 21 chr12 33533110 33533369 -110749120 - L1MB8 LINE L1 -686 5492 5259 433 206 29 0 chr12 33533389 33533491 -110748998 - L1MB8 LINE L1 -1297 4849 4745 1932 132 40 3 chr12 33533493 33533789 -110748700 - AluSx SINE Alu -5 307 1 1324 138 69 55 chr12 33533789 33534127 -110748362 + MER51A LTR ERV1 119 628 -6 1692 98 0 0 chr12 33534228 33534443 -110748046 + AluSc SINE Alu 86 300 -9 1521 95 40 14 chr12 33534590 33534812 -110747677 + MER30 DNA MER1_type 3 230 0 235 330 104 17 chr12 33535560 33535675 -110746814 + REP3 LTR ERV 190 314 -248 358 192 55 0 chr12 33535952 33536025 -110746464 - Tigger5 DNA MER2_type 0 2323 2247 244 213 147 13 chr12 33536031 33536106 -110746383 - Tigger5 DNA MER2_type -2031 292 208 1061 188 56 33 chr12 33536227 33536440 -110746049 - Tigger5 DNA MER2_type -2105 218 1 242 220 55 64 chr12 33536806 33536915 -110745574 + L1MC5 LINE L1 7661 7768 -193 2601 50 0 0 chr12 33536978 33537280 -110745209 - AluY SINE Alu -9 302 1 1422 191 47 47 chr12 33537475 33537774 -110744715 - AluJo SINE Alu -13 299 1 1385 169 8 8 chr12 33537811 33538048 -110744441 + AluJb SINE Alu 58 294 -18 1244 169 201 8 chr12 33538174 33538423 -110744066 - AluJb SINE Alu -15 297 1 1118 194 122 45 chr12 33538949 33539075 -110743414 - L1M4 LINE L1 -3540 2606 2491 2221 178 110 35 chr12 33539075 33539558 -110742931 + LTR44 LTR ERV1 1 519 0 1118 194 122 45 chr12 33539558 33539681 -110742808 - L1M4 LINE L1 -3655 2491 2379 2082 130 7 3 chr12 33539681 33539974 -110742515 - AluSq SINE Alu -19 294 1 1118 194 122 45 chr12 33539974 33540124 -110742365 - L1M4 LINE L1 -3767 2379 2175 1146 184 24 14 chr12 33540127 33540334 -110742155 + MER21B LTR ERV1 1 209 -654 533 176 0 0 chr12 33540355 33540446 -110742043 - MSTC LTR MaLR 0 428 338 2724 190 56 37 chr12 33540457 33540857 -110741632 + MER21B LTR ERV1 222 638 -225 2586 63 0 0 chr12 33540857 33541158 -110741331 + AluY SINE Alu 1 301 -10 2724 190 56 37 chr12 33541158 33541330 -110741159 + MER21B LTR ERV1 638 805 -58 25 31 0 0 chr12 33541361 33541393 -110741096 + AT_rich Low_complexity Low_complexity 1 32 0 340 207 0 0 chr12 33541784 33541842 -110740647 + Tigger2a DNA MER2_type 1 58 -376 849 182 75 0 chr12 33541845 33542004 -110740485 - FAM SINE Alu -4 171 1 1553 195 155 20 chr12 33542339 33542806 -110739683 - MER21B LTR ERV1 -66 797 19 1292 186 128 37 chr12 33542884 33543241 -110739248 - MLT1B LTR MaLR 0 467 3 299 200 97 74 chr12 33543469 33543525 -110738964 - L1MC3 LINE L1 0 7785 7732 2208 96 31 3 chr12 33543525 33543817 -110738672 + AluSg SINE Alu 1 300 -10 299 200 97 74 chr12 33543817 33544023 -110738466 - L1MC3 LINE L1 -53 7732 6062 1027 273 150 35 chr12 33544039 33544744 -110737745 - L1ME3A LINE L1 -4 6166 5543 2175 152 20 68 chr12 33544744 33544991 -110737498 - Tigger2a DNA MER2_type -2275 433 216 1896 77 4 0 chr12 33544991 33545225 -110737264 + AluSg SINE Alu 55 289 -21 2175 152 20 68 chr12 33545225 33545432 -110737057 - Tigger2a DNA MER2_type -2492 216 1 1027 273 150 35 chr12 33545432 33545724 -110736765 - L1ME3A LINE L1 -627 5543 5286 2150 95 0 20 chr12 33545724 33546020 -110736469 - AluSq SINE Alu -23 290 1 1027 273 150 35 chr12 33546020 33546327 -110736162 - L1ME3A LINE L1 -884 5286 5015 1850 152 26 23 chr12 33546327 33546637 -110735852 - AluSx SINE Alu -1 311 1 1027 273 150 35 chr12 33546637 33546707 -110735782 - L1ME3A LINE L1 -1155 5015 4500 2098 91 0 75 chr12 33547070 33547401 -110735088 - AluSc SINE Alu -2 307 2 2492 74 0 0 chr12 33547455 33547753 -110734736 - AluY SINE Alu -13 298 1 1001 184 110 9 chr12 33547754 33547972 -110734517 - MER21B LTR ERV1 -52 811 572 1563 159 3 70 chr12 33548076 33548390 -110734099 - AluJb SINE Alu -19 293 1 507 253 34 27 chr12 33548408 33548554 -110733935 - MER21B LTR ERV1 -619 244 98 2204 131 3 3 chr12 33548632 33548944 -110733545 - AluSx SINE Alu 0 312 1 682 268 19 62 chr12 33556097 33556253 -110726236 - MER58A DNA MER1_type -2197 223 76 2080 124 3 0 chr12 33556253 33556568 -110725921 - AluSx SINE Alu 0 316 1 682 268 19 62 chr12 33556568 33556619 -110725870 - MER58A DNA MER1_type -2344 76 24 188 322 240 0 chr12 33556638 33556784 -110725705 - MIR SINE MIR -56 206 26 1346 170 90 66 chr12 33556802 33557137 -110725352 - MER2 DNA MER2_type -1 343 1 2054 117 7 17 chr12 33557232 33557523 -110724966 - AluSx SINE Alu -20 292 5 2361 90 0 3 chr12 33557645 33557946 -110724543 + AluY SINE Alu 1 300 -11 2135 127 0 0 chr12 33558100 33558391 -110724098 + AluSx SINE Alu 1 291 -21 221 30 61 0 chr12 33558958 33558991 -110723498 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1752 112 62 22 chr12 33558993 33559269 -110723220 - AluSx SINE Alu -25 287 1 1706 142 17 20 chr12 33559445 33559741 -110722748 + AluJo SINE Alu 1 295 -17 600 198 18 9 chr12 33560033 33560144 -110722345 + MER47A DNA MER2_type 1 112 -254 499 73 29 0 chr12 33560144 33560237 -110722252 - AluSx SINE Alu 0 307 213 973 143 21 0 chr12 33560238 33560378 -110722111 - AluSx SINE Alu -170 143 1 2308 70 0 17 chr12 33561722 33562022 -110720467 + AluY SINE Alu 7 301 -10 717 225 25 12 chr12 33562181 33562341 -110720148 - AluJ SINE Alu -20 292 131 202 50 50 50 chr12 33562405 33562445 -110720044 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2293 100 0 0 chr12 33562459 33562759 -110719730 - AluSx SINE Alu -12 300 1 2110 88 39 11 chr12 33562761 33563046 -110719443 - AluSg SINE Alu -17 293 1 771 180 0 0 chr12 33563074 33563196 -110719293 - AluJ SINE Alu -188 124 3 355 219 73 49 chr12 33563234 33563356 -110719133 + Charlie1 DNA MER1_type 2151 2275 -486 297 250 0 0 chr12 33563356 33563412 -110719077 - Tigger3b DNA MER2_type 0 1232 1177 2101 124 24 0 chr12 33563412 33563703 -110718786 - AluSx SINE Alu -14 298 1 470 118 29 0 chr12 33563766 33563834 -110718655 - AluS SINE Alu -242 71 2 24 32 0 0 chr12 33563871 33563902 -110718587 + AT_rich Low_complexity Low_complexity 1 31 0 805 186 28 7 chr12 33563952 33564097 -110718392 + AluJb SINE Alu 1 148 -164 536 178 37 9 chr12 33564233 33564340 -110718149 - FLAM_C SINE Alu -32 111 2 591 188 76 7 chr12 33564385 33564522 -110717967 - L1MA9 LINE L1 0 6312 6163 941 219 3 0 chr12 33564522 33564824 -110717665 - AluSp SINE Alu 0 303 1 24 32 0 0 chr12 33564940 33564971 -110717518 + GC_rich Low_complexity Low_complexity 1 31 0 50 75 0 0 chr12 33565011 33565117 -110717372 + GC_rich Low_complexity Low_complexity 1 106 0 34 24 0 0 chr12 33565134 33565175 -110717314 + GC_rich Low_complexity Low_complexity 1 41 0 2180 111 3 10 chr12 33565483 33565789 -110716700 + AluSx SINE Alu 1 304 -8 720 183 8 0 chr12 33565789 33565911 -110716578 - FLAM_C SINE Alu -185 127 2 723 214 0 0 chr12 33566377 33566494 -110715995 + G-rich Low_complexity Low_complexity 1 117 0 1103 200 49 4 chr12 33567077 33567108 -110715381 + MER46A DNA MER2_type 1 29 -2702 1985 137 3 7 chr12 33567108 33567407 -110715082 + AluSq SINE Alu 1 298 -15 1103 200 49 4 chr12 33567407 33567600 -110714889 + MER46A DNA MER2_type 29 235 -1 * 1649 144 57 57 chr12 33567600 33567772 -110714717 - Tigger3b DNA MER2_type -1897 1131 960 2017 134 0 0 chr12 33567772 33568056 -110714433 + AluSq SINE Alu 2 285 -28 1649 144 57 57 chr12 33568056 33568231 -110714258 - Tigger3b DNA MER2_type -2067 961 784 762 228 23 12 chr12 33568231 33568402 -110714087 - AluSg/x SINE Alu -11 301 129 2009 130 7 17 chr12 33568503 33568803 -110713686 - AluSx SINE Alu -15 297 1 808 155 7 35 chr12 33568850 33568992 -110713497 - AluJo SINE Alu -174 138 1 538 161 183 28 chr12 33568998 33569063 -110713426 - Tigger3b DNA MER2_type -2327 701 647 2184 111 7 0 chr12 33569063 33569352 -110713137 - AluSx SINE Alu -21 291 1 538 161 183 28 chr12 33569352 33569466 -110713023 - Tigger3b DNA MER2_type -2381 647 494 1181 186 20 5 chr12 33569469 33569673 -110712816 + AluJb SINE Alu 1 207 -105 1129 142 30 15 chr12 33569700 33569897 -110712592 - Tigger3b DNA MER2_type -686 545 346 1044 158 0 11 chr12 33569897 33570074 -110712415 - AluSg/x SINE Alu -9 303 129 397 131 87 57 chr12 33570086 33570121 -110712368 - Tigger3(Golem) DNA MER2_type -879 2149 2117 2179 108 11 3 chr12 33570121 33570407 -110712082 + AluSc SINE Alu 1 288 -21 397 131 87 57 chr12 33570407 33570513 -110711976 - Tigger3(Golem) DNA MER2_type -911 2117 209 249 214 143 0 chr12 33570564 33570586 -110711903 + Charlie1 DNA MER1_type 2547 2564 -197 1681 120 102 33 chr12 33570586 33570724 -110711765 + AluSx SINE Alu 1 128 -184 1879 82 124 4 chr12 33570724 33570991 -110711498 + AluSg1 SINE Alu 5 303 -6 1681 120 102 33 chr12 33570991 33571127 -110711362 + AluSx SINE Alu 128 294 -18 249 214 143 0 chr12 33571127 33571216 -110711273 + Charlie1 DNA MER1_type 2564 2674 -87 1397 186 31 38 chr12 33571257 33571548 -110710941 - AluJb SINE Alu -23 289 1 394 257 71 18 chr12 33571562 33571675 -110710814 - MLT1E LTR MaLR -433 160 42 1036 125 0 7 chr12 33571700 33571844 -110710645 + AluSq/x SINE Alu 1 143 -169 2120 85 27 30 chr12 33571846 33572141 -110710348 + AluY SINE Alu 1 294 -17 22 0 0 0 chr12 33572387 33572409 -110710080 + AT_rich Low_complexity Low_complexity 1 22 0 1604 185 40 3 chr12 33572418 33572716 -110709773 - AluJo SINE Alu -3 309 1 806 263 138 80 chr12 33572719 33573088 -110709401 + ERVL LTR ERVL 2687 3092 -2672 2369 71 0 7 chr12 33573088 33573385 -110709104 - AluY SINE Alu -16 295 1 806 263 138 80 chr12 33573385 33573502 -110708987 + ERVL LTR ERVL 3092 3201 -2563 572 289 87 73 chr12 33573607 33573751 -110708738 + ERVL LTR ERVL 3410 3551 -2213 2471 62 0 3 chr12 33573751 33574055 -110708434 + AluY SINE Alu 1 303 -8 572 289 87 73 chr12 33574055 33574280 -110708209 + ERVL LTR ERVL 3551 3784 -1980 476 194 10 20 chr12 33574338 33574436 -110708053 + FLAM_A SINE Alu 26 122 -20 843 312 110 15 chr12 33574646 33575334 -110707155 + ERVL LTR ERVL 4054 4822 -942 1809 166 16 7 chr12 33575334 33575642 -110706847 - AluJb SINE Alu -1 311 1 1835 148 41 29 chr12 33575666 33576010 -110706479 - L1MB7 LINE L1 -22 6162 5815 2304 104 7 0 chr12 33576010 33576318 -110706171 + AluSx SINE Alu 1 310 -2 2620 62 0 3 chr12 33576477 33576783 -110705706 + AluSq SINE Alu 1 305 -8 327 49 0 0 chr12 33576783 33576824 -110705665 + (TA)n Simple_repeat Simple_repeat 2 42 0 359 226 0 43 chr12 33576827 33576920 -110705569 + L1MC4 LINE L1 6615 6703 -1339 1044 151 0 0 chr12 33576929 33577108 -110705381 + (TA)n Simple_repeat Simple_repeat 1 179 0 1199 87 12 0 chr12 33577108 33577269 -110705220 + AluSq SINE Alu 135 297 -16 631 273 98 76 chr12 33577791 33577844 -110704645 + L2 LINE L2 2862 2912 -401 2155 110 10 3 chr12 33577844 33578143 -110704346 - AluSx SINE Alu -11 301 1 631 273 98 76 chr12 33578143 33578433 -110704056 + L2 LINE L2 2912 3217 -96 2292 54 4 4 chr12 33578433 33578741 -110703748 - AluY SINE Alu 0 308 1 631 273 98 76 chr12 33578741 33578762 -110703727 + L2 LINE L2 3217 3236 -77 2011 144 0 0 chr12 33579231 33579515 -110702974 + AluSx SINE Alu 1 284 -28 502 209 0 0 chr12 33579633 33579738 -110702751 + AluSg/x SINE Alu 208 312 0 260 285 69 28 chr12 33579968 33580112 -110702377 + MIR SINE MIR 73 222 -40 228 67 0 0 chr12 33580476 33580506 -110701983 + (TG)n Simple_repeat Simple_repeat 1 30 0 481 56 70 0 chr12 33581227 33581298 -110701191 - AluY SINE Alu -22 289 214 296 233 120 38 chr12 33581299 33581432 -110701057 - L1ME4a LINE L1 -177 5944 5801 1421 194 54 4 chr12 33581513 33581791 -110700698 + AluJb SINE Alu 1 292 -20 2525 81 67 20 chr12 33582039 33582397 -110700092 - THE1C LTR MaLR 0 375 1 463 265 30 8 chr12 33582867 33582999 -110699490 + MIR SINE MIR 110 244 -18 2215 60 32 3 chr12 33583231 33583515 -110698974 + AluY SINE Alu 1 292 -19 2007 156 3 13 chr12 33584312 33584655 -110697834 - AluJb SINE Alu 0 312 1 21 0 0 0 chr12 33584660 33584681 -110697808 + AT_rich Low_complexity Low_complexity 1 21 0 1913 161 3 3 chr12 33584964 33585255 -110697234 + AluJb SINE Alu 1 291 -21 396 0 0 0 chr12 33585282 33585326 -110697163 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 365 267 12 0 chr12 33585382 33585468 -110697021 - MIR SINE MIR -105 157 71 413 262 129 6 chr12 33585599 33585754 -110696735 + MIR SINE MIR 20 192 -63 231 330 0 10 chr12 33585902 33586002 -110696487 - MIR SINE MIR -1 261 163 2121 126 3 0 chr12 33587392 33587686 -110694803 - AluSq SINE Alu -18 295 1 453 141 0 0 chr12 33587984 33588048 -110694441 + AluS SINE Alu 3 66 -246 1662 158 14 4 chr12 33588624 33588924 -110693565 + AluJo SINE Alu 1 303 0 2218 116 3 0 chr12 33588977 33589271 -110693218 + AluSg SINE Alu 1 295 -15 2178 121 3 0 chr12 33589271 33589569 -110692920 + AluSx SINE Alu 1 299 -13 2431 88 0 0 chr12 33589759 33590055 -110692434 + AluSx SINE Alu 1 296 -16 2467 80 0 6 chr12 33590060 33590372 -110692117 + AluY SINE Alu 2 311 0 281 230 274 0 chr12 33590379 33590492 -110691997 + MIR SINE MIR 37 180 -82 240 336 53 75 chr12 33590586 33590765 -110691724 - L2 LINE L2 -252 3061 2880 1923 144 3 22 chr12 33590765 33591077 -110691412 + AluJo SINE Alu 2 307 -5 240 336 53 75 chr12 33591077 33591272 -110691217 - L2 LINE L2 -433 2880 2698 852 134 0 16 chr12 33591277 33591404 -110691085 + AluJb SINE Alu 1 125 -187 22 0 0 0 chr12 33591404 33591426 -110691063 + AT_rich Low_complexity Low_complexity 1 22 0 1002 299 89 74 chr12 33591459 33591782 -110690707 - L2 LINE L2 -660 2654 2337 2333 104 0 0 chr12 33591782 33592081 -110690408 - AluSx SINE Alu -13 299 1 1002 299 89 74 chr12 33592081 33592579 -110689910 - L2 LINE L2 -977 2337 1821 2201 118 0 0 chr12 33592592 33592879 -110689610 + AluSx SINE Alu 2 288 -24 8358 55 1 0 chr12 33593174 33594139 -110688350 - LTR5 LTR ERVK -3 966 1 3523 190 24 30 chr12 33594139 33594355 -110688134 - L1MB8 LINE L1 -152 6026 5810 1456 71 0 22 chr12 33594355 33594539 -110687950 - AluSp SINE Alu -3 310 131 279 0 0 0 chr12 33594539 33594570 -110687919 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2260 62 0 27 chr12 33594570 33594862 -110687627 - AluY SINE Alu -27 284 1 3523 190 24 30 chr12 33594862 33595487 -110687002 - L1MB8 LINE L1 -365 5813 5191 960 120 27 7 chr12 33595500 33595650 -110686839 + AluSx SINE Alu 1 153 -159 2294 112 3 3 chr12 33595752 33596064 -110686425 + AluSp SINE Alu 1 312 -1 1153 195 106 33 chr12 33596176 33596305 -110686184 + MER33 DNA MER1_type 1 119 -2466 285 98 0 0 chr12 33596305 33596346 -110686143 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 981 88 0 0 chr12 33596345 33596482 -110686007 + (TA)n Simple_repeat Simple_repeat 2 138 0 1153 195 106 33 chr12 33596346 33596482 -110686007 + MER33 DNA MER1_type 119 244 -2341 1721 153 18 4 chr12 33596482 33596757 -110685732 - AluJb SINE Alu -23 289 11 1153 195 106 33 chr12 33596757 33596836 -110685653 + MER33 DNA MER1_type 244 242 -2343 2085 143 3 0 chr12 33596836 33597137 -110685352 - AluJb SINE Alu -10 302 1 1153 195 106 33 chr12 33597137 33597228 -110685261 + MER33 DNA MER1_type 241 324 0 237 234 0 16 chr12 33597464 33597528 -110684961 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 1721 152 47 4 chr12 33597703 33597979 -110684510 - AluJo SINE Alu -3 309 22 261 250 15 0 chr12 33598937 33599005 -110683484 + L2 LINE L2 3196 3264 -8 231 289 0 26 chr12 33599314 33599390 -110683099 + GA-rich Low_complexity Low_complexity 4 77 0 351 154 0 0 chr12 33599630 33599695 -110682794 + GA-rich Low_complexity Low_complexity 2 66 0 2351 93 10 0 chr12 33600454 33600756 -110681733 + AluY SINE Alu 1 305 -6 349 297 10 0 chr12 33600760 33600861 -110681628 - L1MC4 LINE L1 -1327 6715 6614 321 311 0 0 chr12 33600783 33600873 -110681616 + L1MC4 LINE L1 6614 6703 -1339 * 1841 143 42 0 chr12 33601525 33601811 -110680678 - AluJb SINE Alu -14 298 1 737 232 33 87 chr12 33602925 33603201 -110679288 - MER102b DNA MER1_type -4 337 77 183 129 0 0 chr12 33603397 33603428 -110679061 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 26 0 0 0 chr12 33605703 33605729 -110676760 + AT_rich Low_complexity Low_complexity 1 26 0 2214 109 0 10 chr12 33605739 33606043 -110676446 - AluSx SINE Alu -11 301 1 870 158 0 0 chr12 33606048 33606175 -110676314 - FLAM_C SINE Alu -16 127 1 22 0 0 0 chr12 33606868 33606890 -110675599 + AT_rich Low_complexity Low_complexity 1 22 0 466 100 0 0 chr12 33606890 33606950 -110675539 - Alu SINE Alu -25 285 226 1936 139 7 16 chr12 33607121 33607424 -110675065 + AluJb SINE Alu 1 300 -12 2406 71 0 0 chr12 33607555 33607850 -110674639 + AluY SINE Alu 1 295 -16 350 363 71 42 chr12 33610150 33610530 -110671959 + L2 LINE L2 2872 3262 -10 2603 76 16 16 chr12 33610614 33610981 -110671508 - L1PA12 LINE L1 -2 6166 5800 1853 113 116 15 chr12 33611246 33611574 -110670915 + MER46B DNA MER2_type 1 236 0 2266 92 3 3 chr12 33611856 33612150 -110670339 - AluSp SINE Alu -17 296 3 32 0 0 0 chr12 33612395 33612427 -110670062 + AT_rich Low_complexity Low_complexity 1 32 0 2393 42 0 0 chr12 33612427 33612713 -110669776 - L1PA5 LINE L1 -9 6145 5860 2124 113 28 0 chr12 33613608 33613899 -110668590 + AluSx SINE Alu 1 299 -13 1664 190 10 3 chr12 33616107 33616402 -110666087 - AluJb SINE Alu -15 297 1 2321 70 6 29 chr12 33616899 33617212 -110665277 - AluY SINE Alu -5 306 1 28 29 0 0 chr12 33617285 33617320 -110665169 + AT_rich Low_complexity Low_complexity 1 35 0 2584 194 71 62 chr12 33617454 33617867 -110664622 + Tigger6a DNA MER2_type 3 411 -1186 635 170 107 9 chr12 33617867 33617979 -110664510 + FLAM_A SINE Alu 1 123 -10 2584 194 71 62 chr12 33617979 33618127 -110664362 + Tigger6a DNA MER2_type 411 573 -1024 2273 87 0 32 chr12 33618127 33618438 -110664051 + AluSg SINE Alu 1 301 -9 2584 194 71 62 chr12 33618438 33618551 -110663938 + Tigger6a DNA MER2_type 573 684 -399 2340 93 6 6 chr12 33618857 33619168 -110663321 + AluSq SINE Alu 1 311 -2 385 290 122 0 chr12 33619534 33619665 -110662824 + MER5A DNA MER1_type 13 159 -30 256 329 114 19 chr12 33620342 33620500 -110661989 - MER20 DNA MER1_type -45 174 2 360 313 60 8 chr12 33620512 33620646 -110661843 + MIR SINE MIR 121 261 -1 26 50 0 0 chr12 33620690 33620730 -110661759 + AT_rich Low_complexity Low_complexity 1 40 0 921 187 39 124 chr12 33621472 33621803 -110660686 - MER46C DNA MER2_type -16 322 20 1281 28 0 0 chr12 33621904 33622048 -110660441 - L1PA5 LINE L1 0 6154 6011 659 62 73 0 chr12 33622269 33622365 -110660124 + L1MA8 LINE L1 6048 6150 -141 638 147 101 0 chr12 33622854 33622983 -110659506 + L1MA8 LINE L1 6148 6289 -2 6046 48 39 17 chr12 33623145 33623340 -110659149 - MER4E LTR ERV1 0 766 577 2426 79 3 10 chr12 33623340 33623644 -110658845 + AluSc SINE Alu 1 302 -7 6046 48 39 17 chr12 33623644 33624198 -110658291 - MER4E LTR ERV1 -189 577 1 506 312 7 0 chr12 33624349 33624487 -110658002 - MER91B DNA MER1_type -51 139 1 487 283 0 26 chr12 33625463 33625615 -110656874 - MIR SINE MIR -45 217 70 1847 150 6 26 chr12 33625818 33626131 -110656358 + AluJb SINE Alu 1 307 -5 6579 179 60 46 chr12 33626131 33626886 -110655603 - L1MB8 LINE L1 -259 5919 5176 1210 126 0 60 chr12 33626886 33627069 -110655420 - FAM SINE Alu -3 172 1 6579 179 60 46 chr12 33627069 33627791 -110654698 - L1MB8 LINE L1 -1002 5176 4465 2208 129 8 64 chr12 33627791 33627978 -110654511 + MER47A DNA MER2_type 1 197 -2126 2374 103 0 0 chr12 33627978 33628278 -110654211 + AluSx SINE Alu 1 300 -12 2208 129 8 64 chr12 33628278 33628406 -110654083 + MER47A DNA MER2_type 197 293 -2030 2211 110 0 31 chr12 33628406 33628725 -110653764 - AluSx SINE Alu -3 309 1 2208 129 8 64 chr12 33628725 33628796 -110653693 + MER47A DNA MER2_type 293 366 0 6579 179 60 46 chr12 33628796 33628825 -110653664 - L1MB8 LINE L1 -1713 4465 4438 9627 25 4 4 chr12 33628825 33630685 -110651804 - L1PA4 LINE L1 0 6155 4301 6579 179 60 46 chr12 33630685 33630698 -110651791 - L1MB8 LINE L1 -1740 4438 4427 2352 83 3 0 chr12 33630698 33630988 -110651501 + AluSp SINE Alu 2 292 -21 6579 179 60 46 chr12 33630988 33631693 -110650796 - L1MB8 LINE L1 -1751 4427 3670 1916 124 18 0 chr12 33631693 33631968 -110650521 - AluSx SINE Alu -1 311 32 6579 179 60 46 chr12 33631968 33632041 -110650448 - L1MB8 LINE L1 -2508 3670 3599 681 205 0 0 chr12 33632349 33632466 -110650023 + FLAM_C SINE Alu 2 118 -25 2434 87 3 0 chr12 33632484 33632793 -110649696 + AluSx SINE Alu 1 310 -2 2312 103 0 0 chr12 33633168 33633470 -110649019 + AluSx SINE Alu 1 302 -10 2342 90 0 0 chr12 33633841 33634155 -110648334 + AluSx SINE Alu 1 314 0 243 158 26 13 chr12 33634305 33634381 -110648108 + (TA)n Simple_repeat Simple_repeat 1 77 0 1911 148 105 0 chr12 33634452 33634757 -110647732 - MER1B DNA MER1_type 0 337 1 295 311 169 11 chr12 33635515 33635692 -110646797 - MIR SINE MIR -57 205 1 3030 161 55 43 chr12 33635869 33636173 -110646316 - Tigger6 DNA MER2_type 0 1597 1298 2218 67 9 86 chr12 33636173 33636500 -110645989 + AluSg SINE Alu 1 302 -8 3030 161 55 43 chr12 33636500 33636691 -110645798 - Tigger6 DNA MER2_type -299 1298 1090 2281 92 0 31 chr12 33636691 33637008 -110645481 - AluSg SINE Alu -3 307 1 3030 161 55 43 chr12 33637008 33637145 -110645344 - Tigger6 DNA MER2_type -507 1090 956 502 196 107 18 chr12 33637156 33637268 -110645221 - FLAM_A SINE Alu -10 123 2 916 209 9 57 chr12 33637374 33637604 -110644885 - AluJo SINE Alu -46 266 48 687 80 0 0 chr12 33637604 33637692 -110644797 + Alu SINE Alu 220 307 -2 1037 93 7 0 chr12 33637692 33637831 -110644658 + AluYb8 SINE Alu 1 140 -178 613 250 8 4 chr12 33637839 33638005 -110644484 + L1MD2 LINE L1 6194 7807 -1 520 217 121 18 chr12 33638041 33638075 -110644414 - MER3 DNA MER1_type -21 188 159 2117 131 7 0 chr12 33638075 33638372 -110644117 + AluSg SINE Alu 1 299 -11 520 217 121 18 chr12 33638372 33638503 -110643986 - MER3 DNA MER1_type -50 159 6 2331 75 3 3 chr12 33638805 33639098 -110643391 - AluSc SINE Alu -16 293 1 469 132 0 66 chr12 33639098 33639189 -110643300 - Tigger1 DNA MER2_type -264 2154 2070 992 174 10 36 chr12 33639190 33639385 -110643104 + Tigger2 DNA MER2_type 2529 2718 0 234 311 97 10 chr12 33639532 33639635 -110642854 - MIR SINE MIR -65 143 32 423 326 119 13 chr12 33639656 33639883 -110642606 + MIR SINE MIR 2 252 -10 1853 146 0 0 chr12 33640032 33640337 -110642152 + AluSx SINE Alu 1 305 0 2004 133 0 3 chr12 33640890 33641183 -110641306 - AluSx SINE Alu -20 292 1 2248 97 0 22 chr12 33641184 33641495 -110640994 - AluSx SINE Alu -8 304 1 495 110 0 0 chr12 33642336 33642409 -110640080 - Alu SINE Alu -5 305 233 194 241 74 0 chr12 33644226 33644280 -110638209 + MIR3 SINE MIR 113 170 -38 2012 116 0 0 chr12 33644652 33644919 -110637570 + AluSx SINE Alu 1 267 -45 186 143 0 0 chr12 33645997 33646032 -110636457 + (CA)n Simple_repeat Simple_repeat 2 36 0 1649 130 20 16 chr12 33646069 33646316 -110636173 + AluSx SINE Alu 1 248 -64 2210 104 0 0 chr12 33646505 33646804 -110635685 + AluSg SINE Alu 1 299 -11 318 328 98 7 chr12 33647613 33647786 -110634703 + MIR SINE MIR 17 207 -55 323 230 16 8 chr12 33647934 33648002 -110634487 - Charlie7 DNA MER1_type -72 2540 2469 1696 148 40 10 chr12 33648002 33648300 -110634189 - AluJo SINE Alu -5 307 1 323 230 16 8 chr12 33648300 33648357 -110634132 - Charlie7 DNA MER1_type -143 2469 2414 450 266 39 0 chr12 33648358 33648486 -110634003 - Charlie7 DNA MER1_type -1915 697 565 1580 172 13 41 chr12 33648524 33648838 -110633651 + AluJo SINE Alu 1 305 -7 202 238 16 0 chr12 33648859 33648922 -110633567 + T-rich Low_complexity Low_complexity 4 67 0 1232 285 6 128 chr12 33649037 33649381 -110633108 + AluSx SINE Alu 1 302 0 235 211 35 18 chr12 33649636 33649693 -110632796 + MIR SINE MIR 89 146 -62 224 269 77 0 chr12 33649826 33649878 -110632611 + MIR SINE MIR 66 121 -87 22 35 0 0 chr12 33650067 33650096 -110632393 + AT_rich Low_complexity Low_complexity 1 29 0 1739 154 16 41 chr12 33650100 33650418 -110632071 + AluJb SINE Alu 3 312 0 31 0 0 0 chr12 33650631 33650662 -110631827 + AT_rich Low_complexity Low_complexity 1 31 0 181 213 43 21 chr12 33650716 33650763 -110631726 + L3 LINE CR1 1527 1574 -3 23 0 0 0 chr12 33653247 33653270 -110629219 + AT_rich Low_complexity Low_complexity 1 23 0 280 255 118 39 chr12 33654703 33654856 -110627633 - L2 LINE L2 0 3313 3149 199 275 19 24 chr12 33654920 33655029 -110627460 + MIR SINE MIR 91 145 -63 2005 149 0 7 chr12 33655038 33655333 -110627156 + AluSx SINE Alu 1 293 -19 434 39 52 0 chr12 33655333 33655410 -110627079 + (TA)n Simple_repeat Simple_repeat 1 81 0 2317 87 3 0 chr12 33655654 33655942 -110626547 - AluSx SINE Alu -23 289 1 307 263 39 101 chr12 33656013 33656089 -110626400 - L1MC4a LINE L1 -1906 5902 5823 2289 110 0 7 chr12 33656089 33656397 -110626092 - AluSx SINE Alu -6 306 1 307 263 39 101 chr12 33656397 33656465 -110626024 - L1MC4a LINE L1 -1985 5823 5768 2367 107 3 0 chr12 33656465 33656775 -110625714 - AluSp SINE Alu -2 311 1 307 263 39 101 chr12 33656775 33656808 -110625681 - L1MC4a LINE L1 -2040 5768 5735 21 36 0 0 chr12 33656808 33656836 -110625653 + AT_rich Low_complexity Low_complexity 1 28 0 223 275 62 0 chr12 33656919 33656999 -110625490 - MIR SINE MIR -26 236 152 2057 123 33 0 chr12 33657268 33657570 -110624919 - AluSx SINE Alu 0 312 1 1523 146 6 122 chr12 33657855 33658222 -110624267 + MLT2B3 LTR ERVL 219 552 -2 429 239 185 0 chr12 33658378 33658508 -110623981 - MLT1H1 LTR MaLR 0 555 402 344 269 47 36 chr12 33658563 33658776 -110623713 - MLT1H LTR MaLR -300 249 20 4433 130 20 124 chr12 33658926 33660469 -110622020 + pTR5 LTR ERV1 743 2606 0 2393 73 0 3 chr12 33660623 33660923 -110621566 + AluY SINE Alu 1 299 -12 2782 180 51 25 chr12 33660928 33661445 -110621044 + L1MB8 LINE L1 5503 6040 -138 1898 138 21 7 chr12 33661445 33661736 -110620753 + AluJb SINE Alu 1 295 -17 2782 180 51 25 chr12 33661736 33661823 -110620666 + L1MB8 LINE L1 6040 6123 -55 339 326 14 48 chr12 33662057 33662204 -110620285 - MLT1-int LTR MaLR -500 871 730 679 239 85 23 chr12 33662343 33662519 -110619970 + MER5A DNA MER1_type 3 189 0 438 319 0 7 chr12 33662761 33662905 -110619584 - MLT1-int LTR MaLR -830 541 399 942 289 128 56 chr12 33663091 33663428 -110619061 - MLT1G1 LTR MaLR 0 595 211 475 237 136 17 chr12 33663428 33663546 -110618943 + FLAM_A SINE Alu 1 132 -1 942 289 128 56 chr12 33663546 33663693 -110618796 - MLT1G1 LTR MaLR -384 211 76 2195 112 7 0 chr12 33663824 33664118 -110618371 + AluSq SINE Alu 1 296 -17 556 115 195 0 chr12 33664202 33664289 -110618200 - U6 snRNA snRNA -3 104 1 1768 163 0 17 chr12 33665089 33665383 -110617106 - AluSx SINE Alu -23 289 1 562 187 0 0 chr12 33666182 33666273 -110616216 - FLAM SINE Alu -13 130 40 1837 146 3 14 chr12 33666482 33666769 -110615720 - AluJb SINE Alu -24 288 5 621 59 0 0 chr12 33667611 33667696 -110614793 - AluSq SINE Alu 0 313 229 1098 96 0 25 chr12 33667697 33667854 -110614635 - AluSq SINE Alu -160 153 1 1533 215 60 57 chr12 33668582 33669019 -110613470 + L1MC4a LINE L1 6441 6878 -930 2442 211 69 34 chr12 33669081 33669104 -110613385 + L1MC4 LINE L1 7240 7261 -781 1599 193 0 35 chr12 33669104 33669245 -110613244 + AluJb SINE Alu 1 145 -167 2238 99 0 0 chr12 33669245 33669570 -110612919 + AluSg SINE Alu 1 325 0 1599 193 0 35 chr12 33669570 33669738 -110612751 + AluJb SINE Alu 145 300 -12 2442 211 69 34 chr12 33669738 33670363 -110612126 + L1MC4 LINE L1 7261 7911 -131 2218 105 3 7 chr12 33670797 33671101 -110611388 - AluSq SINE Alu -10 303 1 402 224 59 0 chr12 33671587 33671672 -110610817 - L2 LINE L2 -5 3267 3178 524 220 115 140 chr12 33672757 33673067 -110609422 + MER39 LTR ERV1 1 491 -216 339 167 0 197 chr12 33673043 33673175 -110609314 - MLT1A1 LTR MaLR -259 106 1 * 1571 164 52 11 chr12 33673304 33673591 -110608898 - AluJb SINE Alu -13 299 1 25 31 0 0 chr12 33674155 33674187 -110608302 + AT_rich Low_complexity Low_complexity 1 32 0 2399 103 0 0 chr12 33674771 33675081 -110607408 + AluSq SINE Alu 1 310 -3 2059 146 7 0 chr12 33675153 33675462 -110607027 + AluJb SINE Alu 1 311 -1 334 190 0 0 chr12 33675469 33675527 -110606962 + L1MB8 LINE L1 6115 6172 -6 1131 121 56 108 chr12 33675709 33675940 -110606549 + AluJo SINE Alu 86 304 -8 1031 184 0 6 chr12 33675959 33676122 -110606367 + FRAM SINE Alu 1 162 -4 459 141 167 0 chr12 33676134 33676212 -110606277 - FLAM_A SINE Alu -32 110 20 1259 115 92 4 chr12 33676292 33676618 -110605871 + L1MA8 LINE L1 5139 5488 -743 2066 115 24 3 chr12 33676619 33676914 -110605575 + AluSx SINE Alu 3 303 -9 14517 162 51 24 chr12 33676925 33677123 -110605366 + L1M1 LINE L1 13 204 -7361 2373 97 0 0 chr12 33677123 33677431 -110605058 + AluY SINE Alu 1 308 -3 14517 162 51 24 chr12 33677431 33679872 -110602617 + L1M1 LINE L1 204 2724 -4841 3458 158 78 36 chr12 33679857 33680565 -110601924 + L1MA8 LINE L1 5505 6249 -42 * 2243 60 14 11 chr12 33680565 33680887 -110601602 + AluY SINE Alu 1 323 0 3458 158 78 36 chr12 33680887 33680932 -110601557 + L1MA8 LINE L1 6249 6291 0 2002 142 3 0 chr12 33681285 33681574 -110600915 + AluSx SINE Alu 1 290 -22 2080 133 30 0 chr12 33682339 33682640 -110599849 - AluSx SINE Alu -2 310 1 324 0 0 0 chr12 33683957 33683993 -110598496 + (CA)n Simple_repeat Simple_repeat 2 37 0 400 321 147 9 chr12 33683999 33684217 -110598272 - MIR SINE MIR 0 262 15 2152 92 36 13 chr12 33684245 33684549 -110597940 + AluSp SINE Alu 1 311 -2 2414 76 0 0 chr12 33685337 33685625 -110596864 + AluSc SINE Alu 1 288 -21 231 36 0 0 chr12 33685629 33685657 -110596832 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2216 82 41 0 chr12 33685854 33686145 -110596344 + AluSx SINE Alu 1 303 -9 1457 162 34 0 chr12 33686202 33686437 -110596052 + AluSx SINE Alu 1 243 -69 1056 159 6 0 chr12 33686593 33686756 -110595733 - AluSg/x SINE Alu -12 298 135 2287 124 0 0 chr12 33688048 33688355 -110594134 - AluSx SINE Alu -5 307 1 1005 59 47 59 chr12 33688463 33688632 -110593857 + MER41B LTR ERV1 131 297 -338 32125 92 14 10 chr12 33688632 33694306 -110588183 + L1PA7 LINE L1 740 6469 0 1058 153 5 6 chr12 33694306 33694488 -110588001 + L1MA8 LINE L1 5812 6001 -173 1312 158 14 18 chr12 33694508 33694729 -110587760 + MER41B LTR ERV1 279 498 -137 2166 76 4 0 chr12 33694867 33695143 -110587346 + AluSg SINE Alu 5 281 -29 2287 114 0 10 chr12 33695301 33695609 -110586880 + AluSx SINE Alu 1 305 -7 286 240 0 40 chr12 33695634 33695709 -110586780 - MER5A DNA MER1_type -87 102 31 323 253 61 121 chr12 33695709 33695829 -110586660 + MER5A DNA MER1_type 4 130 -59 2473 77 0 6 chr12 33695829 33696140 -110586349 - AluSg1 SINE Alu 0 309 1 323 253 61 121 chr12 33696140 33696151 -110586338 + MER5A DNA MER1_type 130 140 -49 2477 86 0 0 chr12 33696151 33696453 -110586036 - AluSq SINE Alu -11 302 1 323 253 61 121 chr12 33696453 33696518 -110585971 + MER5A DNA MER1_type 140 189 0 1533 166 4 16 chr12 33697000 33697193 -110585296 - AluSx SINE Alu 0 327 137 2221 103 7 0 chr12 33697193 33697493 -110584996 - AluSp SINE Alu -11 302 1 1533 166 4 16 chr12 33697493 33697587 -110584902 - AluSx SINE Alu -190 137 43 2265 117 7 0 chr12 33698303 33698611 -110583878 - AluSq SINE Alu -3 310 1 742 209 0 36 chr12 33698910 33699049 -110583440 + FLAM_C SINE Alu 3 136 -7 2207 82 7 10 chr12 33699070 33699363 -110583126 + AluY SINE Alu 1 292 -19 1388 168 16 12 chr12 33699464 33699708 -110582781 - AluJb SINE Alu -67 245 1 2080 106 14 17 chr12 33699814 33700106 -110582383 - AluSx SINE Alu -20 292 2 297 309 71 0 chr12 33700328 33700412 -110582077 + MIR SINE MIR 56 145 -63 2233 126 0 0 chr12 33700417 33700726 -110581763 + AluSx SINE Alu 1 309 -3 198 291 118 9 chr12 33700764 33700874 -110581615 + MIR SINE MIR 137 258 -4 463 193 12 0 chr12 33701347 33701430 -110581059 + FLAM_A SINE Alu 46 129 -13 382 346 7 15 chr12 33701586 33701722 -110580767 - MIR SINE MIR -107 155 21 200 309 0 0 chr12 33701731 33701786 -110580703 - L2 LINE L2 -12 3260 3206 2162 97 45 0 chr12 33701929 33702219 -110580270 - AluSc SINE Alu -6 303 1 1673 153 25 68 chr12 33702370 33702696 -110579793 - AluJo SINE Alu 0 312 1 225 94 0 0 chr12 33703360 33703392 -110579097 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 885 193 6 58 chr12 33703392 33703563 -110578926 - AluJo SINE Alu -30 282 121 2192 118 0 7 chr12 33703588 33703893 -110578596 - AluSx SINE Alu -9 303 1 755 149 57 28 chr12 33703925 33704066 -110578423 - FRAM SINE Alu -6 170 26 602 147 0 0 chr12 33704069 33704171 -110578318 - L1MA5A LINE L1 -2 6295 6194 2172 82 3 82 chr12 33705639 33705967 -110576522 - AluSq SINE Alu -11 302 1 2253 113 0 6 chr12 33707040 33707351 -110575138 - AluSq SINE Alu -4 309 1 1558 171 47 0 chr12 33707362 33707636 -110574853 - AluJo SINE Alu -25 287 1 305 357 0 10 chr12 33708118 33708216 -110574273 - L2 LINE L2 -7 3265 3169 351 65 0 0 chr12 33708259 33708305 -110574184 + (ATGGTG)n Simple_repeat Simple_repeat 6 51 0 344 287 195 5 chr12 33708311 33708506 -110573983 - MIR SINE MIR -8 254 23 204 246 33 0 chr12 33708584 33708645 -110573844 + (CTAAA)n Simple_repeat Simple_repeat 4 66 0 218 314 29 14 chr12 33708647 33708717 -110573772 - L2 LINE L2 -203 3069 2999 592 227 50 8 chr12 33708904 33709023 -110573466 - FLAM_A SINE Alu -9 124 1 516 221 71 0 chr12 33709245 33709358 -110573131 - FLAM_A SINE Alu -10 132 12 337 280 23 0 chr12 33709515 33709627 -110572862 - MIR SINE MIR -87 121 5 2434 86 0 0 chr12 33709916 33710217 -110572272 - AluSq SINE Alu -12 301 1 899 314 173 47 chr12 33710651 33710718 -110571771 - L3 LINE CR1 -327 1250 1193 1995 158 10 0 chr12 33710718 33711021 -110571468 - AluSx SINE Alu -6 306 1 899 314 173 47 chr12 33711021 33711891 -110570598 - L3 LINE CR1 -384 1193 195 2378 66 24 0 chr12 33712102 33712391 -110570098 - AluY SINE Alu -15 296 1 2904 101 53 22 chr12 33712614 33713029 -110569460 + MSTC LTR MaLR 1 428 0 1753 131 70 24 chr12 33713806 33714104 -110568385 - AluSx SINE Alu 0 312 1 348 355 19 13 chr12 33714198 33714353 -110568136 + MIR SINE MIR 53 208 -54 196 318 91 11 chr12 33714369 33714457 -110568032 - L2 LINE L2 -811 2503 2409 2198 115 0 20 chr12 33714650 33714954 -110567535 - AluSx SINE Alu -14 298 1 1038 177 6 0 chr12 33717571 33717746 -110564743 - AluJb SINE Alu -1 311 136 1097 109 0 2 chr12 33717974 33718222 -110564267 - AluSc SINE Alu -16 293 1 2353 89 0 0 chr12 33718256 33718548 -110563941 - AluSg SINE Alu -18 292 1 2287 97 0 20 chr12 33718551 33718850 -110563639 - AluSg SINE Alu -17 293 1 2454 87 0 6 chr12 33718957 33719269 -110563220 - AluSx SINE Alu -2 310 1 24 32 0 0 chr12 33719292 33719323 -110563166 + AT_rich Low_complexity Low_complexity 1 31 0 1960 122 54 3 chr12 33719978 33720272 -110562217 - AluJb SINE Alu -3 309 1 396 0 0 0 chr12 33721694 33721738 -110560751 + (TA)n Simple_repeat Simple_repeat 2 45 0 2333 80 7 7 chr12 33722804 33723104 -110559385 - AluSq SINE Alu -13 300 1 361 290 36 79 chr12 33723138 33723441 -110559048 - L1MEd LINE L1 -5799 320 31 348 276 113 49 chr12 33723625 33723828 -110558661 - MIR SINE MIR -39 223 8 26 30 0 0 chr12 33723918 33723951 -110558538 + AT_rich Low_complexity Low_complexity 1 33 0 2520 68 0 0 chr12 33724132 33724442 -110558047 - AluY SINE Alu -1 310 1 2403 67 14 0 chr12 33724471 33724768 -110557721 - AluSp SINE Alu -12 301 1 2333 91 7 0 chr12 33725143 33725451 -110557038 - AluSp SINE Alu -3 310 1 2042 110 7 27 chr12 33726313 33726614 -110555875 + AluY SINE Alu 1 295 -16 2262 117 3 0 chr12 33726658 33726965 -110555524 + AluSx SINE Alu 5 312 0 213 121 0 0 chr12 33727274 33727307 -110555182 + (T)n Simple_repeat Simple_repeat 1 33 0 2065 117 0 0 chr12 33727575 33727866 -110554623 + AluSx SINE Alu 1 291 -21 524 233 160 13 chr12 33728022 33728172 -110554317 + MER5A DNA MER1_type 18 189 0 21 57 0 0 chr12 33732067 33732102 -110550387 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr12 33733816 33733838 -110548651 + AT_rich Low_complexity Low_complexity 1 22 0 1007 37 19 25 chr12 33735575 33735736 -110546753 + (TTC)n Simple_repeat Simple_repeat 2 161 0 2180 93 0 0 chr12 33735739 33736018 -110546471 - AluSg SINE Alu -31 279 1 1678 211 0 3 chr12 33736021 33736319 -110546170 - AluJb SINE Alu -15 297 1 1733 185 3 7 chr12 33736654 33736952 -110545537 - AluJo SINE Alu -13 299 3 2418 90 0 3 chr12 33737189 33737499 -110544990 - AluY SINE Alu -2 309 1 25 31 0 0 chr12 33737504 33737536 -110544953 + AT_rich Low_complexity Low_complexity 1 32 0 2028 102 7 4 chr12 33737549 33737824 -110544665 - AluSq SINE Alu -37 276 1 862 211 6 17 chr12 33737950 33738130 -110544359 - MER45A DNA AcHobo 0 178 1 2251 118 0 16 chr12 33738202 33738517 -110543972 + AluSg SINE Alu 1 310 0 2254 79 0 16 chr12 33739303 33739607 -110542882 + AluY SINE Alu 1 299 -12 301 291 46 53 chr12 33739684 33739799 -110542690 + MIR SINE MIR 53 168 -94 1568 101 50 126 chr12 33739799 33740116 -110542373 + AluSx SINE Alu 1 293 -19 301 291 46 53 chr12 33740116 33740151 -110542338 + MIR SINE MIR 168 202 -60 1203 134 205 13 chr12 33740217 33740456 -110542033 + AluSx SINE Alu 1 285 -27 482 168 0 53 chr12 33740558 33740653 -110541836 - AluJb SINE Alu -158 154 65 2365 85 0 13 chr12 33740947 33741254 -110541235 - AluY SINE Alu -8 303 1 438 304 57 30 chr12 33742464 33742694 -110539795 - L1ME4a LINE L1 -198 5923 5688 28 48 0 0 chr12 33742906 33742948 -110539541 + AT_rich Low_complexity Low_complexity 1 42 0 1904 136 24 21 chr12 33742950 33743237 -110539252 - AluSx SINE Alu -24 288 1 699 168 8 24 chr12 33743248 33743373 -110539116 - FLAM_A SINE Alu -8 125 3 2426 72 0 0 chr12 33744169 33744461 -110538028 + AluSg SINE Alu 1 292 -18 247 345 108 0 chr12 33745168 33745307 -110537182 - MIR SINE MIR -4 258 105 23 0 0 0 chr12 33745307 33745330 -110537159 + AT_rich Low_complexity Low_complexity 1 23 0 543 246 142 21 chr12 33745355 33745685 -110536804 - L1ME4a LINE L1 -844 5302 4933 2208 96 7 7 chr12 33745910 33746202 -110536287 - AluSg SINE Alu -13 297 6 192 40 0 0 chr12 33746643 33746668 -110535821 + (A)n Simple_repeat Simple_repeat 1 25 0 234 261 0 0 chr12 33746766 33746831 -110535658 + L1M4 LINE L1 3441 3505 -2641 200 261 22 0 chr12 33746840 33746886 -110535603 - MER5A DNA MER1_type -142 47 1 783 262 81 61 chr12 33749148 33749541 -110532948 - L2 LINE L2 0 3313 2913 1279 176 78 4 chr12 33749568 33749719 -110532770 - AluJo SINE Alu -24 288 111 183 42 0 0 chr12 33749719 33749743 -110532746 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1279 176 78 4 chr12 33749743 33749835 -110532654 - AluJo SINE Alu -201 111 27 2419 66 3 3 chr12 33750925 33751226 -110531263 + AluY SINE Alu 1 301 -10 370 287 91 14 chr12 33753465 33753608 -110528881 - MIR3 SINE MIR -11 197 44 1394 246 69 50 chr12 33753670 33754109 -110528380 + MER119 DNA MER1_type 8 463 -120 2076 96 19 0 chr12 33754109 33754407 -110528082 - AluSg SINE Alu 0 307 5 1394 246 69 50 chr12 33754407 33754531 -110527958 + MER119 DNA MER1_type 463 583 0 1818 152 41 7 chr12 33755245 33755535 -110526954 + AluJb SINE Alu 2 301 -11 474 307 82 13 chr12 33755619 33755850 -110526639 + MIR SINE MIR 14 260 -2 2176 100 0 0 chr12 33755889 33756242 -110526247 - AluSg SINE Alu 0 353 1 330 303 69 87 chr12 33756367 33756598 -110525891 - L2 LINE L2 -1 3271 3045 1079 193 0 21 chr12 33756601 33756788 -110525701 - AluJo SINE Alu -51 261 79 307 294 35 0 chr12 33761514 33761599 -110520890 - MIR3 SINE MIR -54 154 67 568 321 57 48 chr12 33762202 33762439 -110520050 - L2 LINE L2 -3 3310 3068 3533 36 0 0 chr12 33762439 33762859 -110519630 - L1PA3 LINE L1 0 6155 5736 568 321 57 48 chr12 33762859 33762954 -110519535 - L2 LINE L2 -245 3068 2975 347 277 15 46 chr12 33763170 33763300 -110519189 + MIR SINE MIR 23 148 -60 205 339 125 18 chr12 33764527 33764751 -110517738 - MIR SINE MIR -7 255 8 359 279 128 30 chr12 33765591 33765856 -110516633 + L1ME4a LINE L1 5588 5878 -243 529 323 63 5 chr12 33766174 33766363 -110516126 + L3 LINE CR1 1369 1568 -9 2166 58 47 14 chr12 33766834 33767112 -110515377 - AluY SINE Alu -24 287 1 307 180 0 0 chr12 33767349 33767399 -110515090 + 5S rRNA rRNA 1 50 -71 2177 122 0 0 chr12 33767675 33767971 -110514518 + AluSx SINE Alu 1 296 -16 236 349 83 60 chr12 33768733 33769321 -110513168 - L2 LINE L2 -338 2976 2375 1215 135 0 0 chr12 33770024 33770194 -110512295 - AluJ SINE Alu -14 298 129 765 159 0 8 chr12 33770400 33770526 -110511963 - AluJ SINE Alu -186 126 2 1293 191 65 14 chr12 33771676 33771954 -110510535 - AluJb SINE Alu -20 292 1 1953 150 25 0 chr12 33773121 33773407 -110509082 + AluJb SINE Alu 1 293 -19 1590 114 4 0 chr12 33773780 33774008 -110508481 + AluSp SINE Alu 74 302 -11 2004 84 4 8 chr12 33774322 33774583 -110507906 - AluY SINE Alu -51 260 1 365 183 24 37 chr12 33774583 33774707 -110507782 + MER41A LTR ERV1 395 474 -12 597 284 94 0 chr12 33774859 33775067 -110507422 + MIR SINE MIR 18 249 -13 366 67 0 0 chr12 33775326 33775371 -110507118 - Alu SINE Alu -258 45 1 270 242 61 30 chr12 33776065 33776164 -110506325 - L3 LINE CR1 -102 1475 1374 853 183 6 34 chr12 33776168 33776343 -110506146 + FRAM SINE Alu 1 167 -9 422 155 14 0 chr12 33776991 33777062 -110505427 + LTR48B LTR ERV1 1 72 -572 3224 189 17 34 chr12 33777062 33777709 -110504780 + L1M1 LINE L1 20 655 -6910 669 191 85 0 chr12 33777687 33777828 -110504661 + L1M1 LINE L1 220 372 -7193 * 11406 158 169 34 chr12 33777811 33778973 -110503516 + L1M1 LINE L1 885 1888 -5677 2671 40 0 3 chr12 33778973 33779277 -110503212 + AluY SINE Alu 1 303 -8 11406 158 169 34 chr12 33779277 33779545 -110502944 + L1M1 LINE L1 1888 2118 -5447 1556 150 0 0 chr12 33779545 33779772 -110502717 + AluSg/x SINE Alu 74 300 -12 11406 158 169 34 chr12 33779772 33780036 -110502453 + L1M1 LINE L1 2118 2345 -5220 2376 107 3 0 chr12 33780036 33780345 -110502144 + AluSg SINE Alu 1 310 0 11406 158 169 34 chr12 33780345 33780930 -110501559 + L1M1 LINE L1 2345 2849 -4716 1633 171 4 19 chr12 33780930 33781199 -110501290 + AluJo SINE Alu 1 265 -47 11406 158 169 34 chr12 33781199 33781510 -110500979 + L1M1 LINE L1 2849 3116 -4449 2294 92 7 0 chr12 33781510 33781815 -110500674 + AluY SINE Alu 1 307 -4 11406 158 169 34 chr12 33781815 33782477 -110500012 + L1M1 LINE L1 3116 3687 -3878 2863 107 49 5 chr12 33782477 33782926 -110499563 + L1MA2 LINE L1 5831 6299 -5 11406 158 169 34 chr12 33782926 33782947 -110499542 + L1M1 LINE L1 3687 4634 -2931 2276 114 3 0 chr12 33782958 33783256 -110499233 + AluSx SINE Alu 1 299 -13 877 113 46 26 chr12 33783256 33783397 -110499092 + LTR48B LTR ERV1 62 208 -436 991 156 19 0 chr12 33783397 33783551 -110498938 - MER4D LTR ERV1 0 903 747 1190 58 19 0 chr12 33783942 33784098 -110498391 - L1PA7 LINE L1 -2 6152 5994 1321 174 32 108 chr12 33784143 33784350 -110498139 - AluJb SINE Alu -20 292 116 1812 109 101 4 chr12 33784350 33784626 -110497863 + AluSc SINE Alu 1 303 -6 1321 174 32 108 chr12 33784626 33784734 -110497755 - AluJb SINE Alu -196 116 1 906 234 47 16 chr12 33784861 33785232 -110497257 + LTR29 LTR ERV1 137 565 -79 1644 152 3 20 chr12 33785241 33785538 -110496951 - AluSx SINE Alu -16 296 5 217 311 54 0 chr12 33785674 33785748 -110496741 + L2 LINE L2 3228 3305 -8 2075 91 17 3 chr12 33785749 33786036 -110496453 + AluY SINE Alu 2 292 -19 1259 146 194 8 chr12 33786136 33786389 -110496100 + AluSx SINE Alu 1 300 -12 3004 130 242 0 chr12 33786423 33786977 -110495512 - LTR12 LTR ERV1 0 688 1 794 233 34 48 chr12 33787060 33787352 -110495137 - pTR5 LTR ERV1 -1410 1028 741 1561 191 42 3 chr12 33787603 33787891 -110494598 + AluJo SINE Alu 1 299 -13 192 77 0 0 chr12 33787974 33788000 -110494489 + (TA)n Simple_repeat Simple_repeat 2 27 0 704 168 0 73 chr12 33788000 33788023 -110494466 - FLAM_A SINE Alu -175 127 104 2258 89 3 13 chr12 33788023 33788325 -110494164 + AluSc SINE Alu 1 299 -10 704 168 0 73 chr12 33788325 33788438 -110494051 - FLAM_A SINE Alu -198 104 1 2023 138 0 3 chr12 33788609 33788905 -110493584 - AluSx SINE Alu -17 295 1 2113 119 0 22 chr12 33788906 33789217 -110493272 - AluSx SINE Alu -8 304 1 579 227 0 0 chr12 33789499 33789609 -110492880 - FAM SINE Alu -63 122 13 246 273 117 16 chr12 33789619 33789747 -110492742 - MIR SINE MIR -109 153 13 195 146 42 0 chr12 33790125 33790173 -110492316 + L3 LINE CR1 1337 1386 -191 839 175 0 45 chr12 33790466 33790620 -110491869 + FAM SINE Alu 12 158 -27 210 143 0 0 chr12 33790626 33790661 -110491828 + (TCTCCC)n Simple_repeat Simple_repeat 1 35 0 722 170 0 0 chr12 33790661 33790773 -110491716 - AluJ SINE Alu -21 291 180 771 109 17 0 chr12 33790784 33790903 -110491586 - AluJ SINE Alu -186 126 6 243 0 0 0 chr12 33790923 33790950 -110491539 + (A)n Simple_repeat Simple_repeat 1 27 0 1901 38 0 0 chr12 33790952 33791164 -110491325 + AluY SINE Alu 87 298 -13 1252 107 11 0 chr12 33791166 33791344 -110491145 + AluSq SINE Alu 126 305 -8 2265 97 0 3 chr12 33791507 33791797 -110490692 + AluSx SINE Alu 1 289 -23 225 0 0 0 chr12 33793641 33793666 -110488823 + (CCG)n Simple_repeat Simple_repeat 2 26 0 2015 123 3 0 chr12 33794275 33794560 -110487929 - AluJo SINE Alu -26 286 1 1461 194 20 0 chr12 33794626 33794796 -110487693 - AluJo SINE Alu -12 300 120 231 36 0 0 chr12 33794796 33794824 -110487665 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1461 194 20 0 chr12 33794824 33794947 -110487542 - AluJo SINE Alu -192 120 1 2467 70 7 3 chr12 33795558 33795856 -110486633 - AluSq SINE Alu -14 299 1 8499 115 30 34 chr12 33795856 33796277 -110486212 - Tigger1 DNA MER2_type -330 2088 1667 553 165 78 17 chr12 33796277 33796392 -110486097 - FLAM_C SINE Alu -11 122 1 8499 115 30 34 chr12 33796392 33797338 -110485151 - Tigger1 DNA MER2_type -751 1667 727 2367 86 0 19 chr12 33797339 33797653 -110484836 + AluY SINE Alu 1 308 -3 948 170 11 48 chr12 33797653 33797841 -110484648 - Tigger1 DNA MER2_type -2237 181 1 239 224 143 31 chr12 33797841 33797925 -110484564 + MER106B DNA MER1_type 962 1056 -3 1402 164 0 38 chr12 33798359 33798597 -110483892 + AluJo SINE Alu 1 229 -83 826 156 0 15 chr12 33798765 33798900 -110483589 + FLAM_C SINE Alu 1 133 0 2347 94 0 19 chr12 33798914 33799222 -110483267 + AluSq SINE Alu 3 304 -9 2063 115 28 3 chr12 33799525 33799812 -110482677 + AluSx SINE Alu 1 294 -18 2586 71 0 0 chr12 33799814 33800125 -110482364 + AluY SINE Alu 1 311 0 511 216 48 37 chr12 33800876 33801225 -110481264 - L1ME4a LINE L1 -1 6120 5709 600 262 0 0 chr12 33801295 33801436 -110481053 - FLAM_C SINE Alu 0 143 3 189 0 0 0 chr12 33801437 33801458 -110481031 + (T)n Simple_repeat Simple_repeat 1 21 0 598 135 42 0 chr12 33801458 33801554 -110480935 - HY3 scRNA scRNA -1 100 1 1554 145 0 125 chr12 33801837 33802031 -110480458 - AluJb SINE Alu 0 302 168 2066 81 0 0 chr12 33802031 33802279 -110480210 + AluSg SINE Alu 1 248 -62 1554 145 0 125 chr12 33802279 33802429 -110480060 - AluJb SINE Alu -134 168 1 1802 108 4 4 chr12 33802621 33802871 -110479618 + AluSq SINE Alu 1 250 -63 2146 136 7 0 chr12 33803039 33803347 -110479142 + AluJo SINE Alu 3 312 0 2295 92 0 7 chr12 33803439 33803743 -110478746 + AluSx SINE Alu 1 302 -10 207 188 31 16 chr12 33803781 33803845 -110478644 + (TA)n Simple_repeat Simple_repeat 1 65 0 1209 267 28 84 chr12 33803871 33804444 -110478045 + MER34 LTR ERV1 1 541 -1 736 190 0 0 chr12 33804735 33804856 -110477633 + FLAM_A SINE Alu 2 122 -11 2041 73 0 4 chr12 33805008 33805267 -110477222 - AluY SINE Alu -7 304 47 221 163 0 41 chr12 33805392 33805441 -110477048 - L2 LINE L2 0 3272 3226 267 291 28 111 chr12 33805557 33805846 -110476643 - L2 LINE L2 -182 3090 2826 1125 137 6 6 chr12 33805852 33806027 -110476462 - MER89 LTR ERV1 0 559 385 1691 164 3 17 chr12 33806040 33806327 -110476162 + AluJb SINE Alu 2 284 -28 1786 175 16 6 chr12 33806328 33806643 -110475846 + MER89 LTR ERV1 242 559 0 1088 193 8 42 chr12 33806917 33807176 -110475313 + LTR16C LTR ERVL 233 482 -9 2072 120 0 17 chr12 33807671 33807972 -110474517 - AluSq SINE Alu -17 296 1 1861 170 0 0 chr12 33807974 33808268 -110474221 - AluJb SINE Alu -18 294 1 1898 130 3 33 chr12 33808324 33808624 -110473865 - AluSq SINE Alu -7 306 16 378 110 30 40 chr12 33808639 33808739 -110473750 + CT-rich Low_complexity Low_complexity 4 102 0 807 99 22 39 chr12 33808739 33808921 -110473568 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 690 190 0 28 chr12 33808937 33809116 -110473373 + CT-rich Low_complexity Low_complexity 3 176 0 1918 134 0 11 chr12 33809128 33809404 -110473085 - AluSx SINE Alu -39 273 1 915 190 0 0 chr12 33809410 33809568 -110472921 - AluSq SINE Alu -25 288 131 1472 102 0 15 chr12 33809580 33809785 -110472704 - AluSx SINE Alu -6 306 105 2862 123 7 23 chr12 33809798 33810228 -110472261 - LTR10E LTR ERV1 -1 632 210 761 21 11 0 chr12 33810229 33810323 -110472166 - LTR10E LTR ERV1 -538 95 1 4536 270 11 25 chr12 33810387 33811386 -110471103 - HERVI LTR ERV1 -138 7647 6668 2333 70 3 58 chr12 33811386 33811715 -110470774 + AluY SINE Alu 1 311 0 4536 270 11 25 chr12 33811715 33811968 -110470521 - HERVI LTR ERV1 -1117 6668 6413 1566 189 93 0 chr12 33811970 33812293 -110470196 - LTR10E-int LTR ERV1 -3804 3092 2740 730 205 86 27 chr12 33812333 33812545 -110469944 - LTR10E-int LTR ERV1 -6424 225 5 857 125 26 33 chr12 33812549 33812701 -110469788 - LTR10E LTR ERV1 -2 631 481 659 109 11 0 chr12 33812702 33812794 -110469695 - AluSx SINE Alu -193 120 28 2501 97 46 0 chr12 33812794 33813144 -110469345 + MER51C LTR ERV1 275 640 0 1720 146 7 22 chr12 33813655 33813930 -110468559 - AluJb SINE Alu -14 298 28 402 100 0 0 chr12 33813935 33813995 -110468494 + Alu SINE Alu 241 300 -10 2145 122 0 0 chr12 33814005 33814291 -110468198 + AluSc SINE Alu 2 287 -22 2976 89 13 17 chr12 33814291 33814762 -110467727 + MER4A LTR ERV1 128 664 0 2573 162 40 120 chr12 33814804 33814908 -110467581 + MER67C LTR ERV1 52 163 -547 2067 111 4 4 chr12 33814908 33815215 -110467274 - AluSg SINE Alu 0 307 1 2573 162 40 120 chr12 33815215 33815340 -110467149 + MER67C LTR ERV1 163 296 -414 4153 99 23 44 chr12 33815340 33815926 -110466563 - LTR9B LTR ERV1 0 644 72 2394 51 0 74 chr12 33815926 33816262 -110466227 + AluY SINE Alu 1 311 0 4153 99 23 44 chr12 33816262 33816333 -110466156 - LTR9B LTR ERV1 -572 72 1 2573 162 40 120 chr12 33816333 33816423 -110466066 + MER67C LTR ERV1 296 392 -318 1838 173 10 19 chr12 33816423 33816736 -110465753 + AluJo SINE Alu 1 310 -2 2573 162 40 120 chr12 33816736 33816804 -110465685 + MER67C LTR ERV1 392 464 -246 4050 148 3 3 chr12 33816804 33817322 -110465167 + MER41B LTR ERV1 1 521 -114 2014 145 3 7 chr12 33817322 33817632 -110464857 - AluSg SINE Alu -1 309 1 4050 148 3 3 chr12 33817632 33817747 -110464742 + MER41B LTR ERV1 520 634 -1 2573 162 40 120 chr12 33817747 33818071 -110464418 + MER67C LTR ERV1 464 710 0 2388 67 3 13 chr12 33818332 33818631 -110463858 + AluSg SINE Alu 1 296 -14 250 346 47 16 chr12 33818751 33818878 -110463611 + L2 LINE L2 3180 3310 -3 1083 153 6 6 chr12 33818917 33819087 -110463402 + MER2 DNA MER2_type 3 172 -173 1943 133 10 17 chr12 33819091 33819392 -110463097 - AluSx SINE Alu -13 299 1 268 214 29 0 chr12 33819507 33819577 -110462912 + MER34 LTR ERV1 1 72 -470 1700 128 9 122 chr12 33819588 33819707 -110462782 + AluSx SINE Alu 11 142 -170 2216 79 14 0 chr12 33819707 33819987 -110462502 + AluY SINE Alu 1 324 0 312 0 0 25 chr12 33819987 33820027 -110462462 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 1700 128 9 122 chr12 33820027 33820241 -110462248 + AluSx SINE Alu 142 309 -3 2270 94 0 0 chr12 33820262 33820591 -110461898 + AluSq SINE Alu 1 329 0 1598 177 3 18 chr12 33820592 33820944 -110461545 + AluJb SINE Alu 3 350 0 1341 247 60 26 chr12 33820984 33821288 -110461201 + LTR29 LTR ERV1 137 427 -168 2009 142 0 7 chr12 33821288 33821583 -110460906 + AluSx SINE Alu 1 293 -19 1341 247 60 26 chr12 33821583 33821754 -110460735 + LTR29 LTR ERV1 427 591 -4 2228 108 0 3 chr12 33821781 33822078 -110460411 - AluY SINE Alu -15 296 1 609 194 47 23 chr12 33822126 33822255 -110460234 + MER110 LTR ERV1 360 491 0 1273 188 96 15 chr12 33822306 33822578 -110459911 - AluJo SINE Alu -18 294 1 2482 77 0 0 chr12 33822586 33822884 -110459605 - AluY SINE Alu -13 298 1 2179 163 22 38 chr12 33822895 33823348 -110459141 - L1MB8 LINE L1 0 6178 5733 336 24 0 0 chr12 33823438 33823479 -110459010 + (TG)n Simple_repeat Simple_repeat 2 42 0 2263 119 0 0 chr12 33823479 33823782 -110458707 - AluSx SINE Alu -9 303 1 745 182 0 30 chr12 33823789 33823921 -110458568 - FLAM_C SINE Alu -14 129 2 386 158 37 37 chr12 33824172 33824254 -110458235 + MER34B LTR ERV1 1 82 -483 742 124 34 22 chr12 33824257 33824435 -110458054 + GA-rich Low_complexity Low_complexity 1 180 0 523 249 120 17 chr12 33824504 33824745 -110457744 + MER34B LTR ERV1 178 443 -122 2088 101 42 0 chr12 33824836 33825122 -110457367 - AluSq SINE Alu -15 298 1 1419 135 200 108 chr12 33825254 33825333 -110457156 - MER4A LTR ERV1 0 664 594 1854 132 4 21 chr12 33825333 33825614 -110456875 - AluSx SINE Alu -17 295 20 1419 135 200 108 chr12 33825614 33825904 -110456585 - MER4A LTR ERV1 -70 594 261 652 105 0 67 chr12 33825904 33826009 -110456480 - MER4A LTR ERV1 -566 98 1 2351 97 0 0 chr12 33826081 33826380 -110456109 + AluY SINE Alu 1 299 -12 217 283 17 0 chr12 33826462 33826522 -110455967 + MIR SINE MIR 45 105 -157 1926 130 3 25 chr12 33826587 33826871 -110455618 - AluSx SINE Alu -34 278 1 266 224 153 10 chr12 33826871 33826969 -110455520 + MIR SINE MIR 92 203 -59 265 135 126 72 chr12 33826991 33827102 -110455387 - MER113 DNA MER1_type? -83 438 322 2275 77 20 3 chr12 33827781 33828080 -110454409 - AluSc SINE Alu -5 304 1 22 0 0 0 chr12 33828080 33828102 -110454387 + AT_rich Low_complexity Low_complexity 1 22 0 628 162 8 17 chr12 33828112 33828229 -110454260 - FLAM_C SINE Alu -27 116 1 27 0 0 0 chr12 33828315 33828342 -110454147 + AT_rich Low_complexity Low_complexity 1 27 0 2097 114 7 3 chr12 33828345 33828642 -110453847 + AluSq SINE Alu 1 298 -15 2250 69 3 3 chr12 33828645 33828933 -110453556 + AluY SINE Alu 2 289 -22 378 0 0 0 chr12 33828936 33828978 -110453511 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 643 174 26 9 chr12 33828978 33829093 -110453396 - FLAM_C SINE Alu -25 118 2 641 178 74 0 chr12 33829138 33829273 -110453216 - L1MA9 LINE L1 0 6312 6168 2468 88 0 0 chr12 33829273 33829579 -110452910 - AluSp SINE Alu -7 306 1 780 134 8 8 chr12 33829719 33829846 -110452643 + L1M2 LINE L1 5141 5267 -879 1393 130 9 13 chr12 33829894 33830125 -110452364 + L1M2 LINE L1 5256 5485 -827 1045 164 53 40 chr12 33830126 33830352 -110452137 + AluSx SINE Alu 1 229 -83 289 221 15 25 chr12 33830394 33830474 -110452015 + AluJ/FLAM SINE Alu 1 64 -238 2023 138 3 0 chr12 33830609 33830905 -110451584 + AluSx SINE Alu 3 299 -13 408 284 46 0 chr12 33830916 33831058 -110451431 - MIR SINE MIR -63 145 20 1954 178 12 35 chr12 33831075 33831474 -110451015 + MLT1B LTR MaLR 1 390 0 1035 89 0 15 chr12 33831695 33831830 -110450659 + AluSq/x SINE Alu 1 133 -179 1630 189 0 23 chr12 33832171 33832472 -110450017 + AluJb SINE Alu 3 296 -16 1354 142 47 126 chr12 33833383 33833621 -110448868 + MER4A LTR ERV1 372 580 -84 1854 132 4 21 chr12 33833621 33833902 -110448587 + AluSx SINE Alu 20 295 -17 1354 142 47 126 chr12 33833902 33833981 -110448508 + MER4A LTR ERV1 580 664 0 2131 104 31 0 chr12 33834113 33834402 -110448087 + AluSq SINE Alu 1 298 -15 523 249 120 17 chr12 33834493 33834734 -110447755 - MER34B LTR ERV1 -122 443 178 629 109 32 10 chr12 33834793 33834985 -110447504 + CT-rich Low_complexity Low_complexity 1 196 0 300 213 50 25 chr12 33834988 33835068 -110447421 - MER34B LTR ERV1 -483 82 1 745 182 0 30 chr12 33835319 33835451 -110447038 + FLAM_C SINE Alu 2 129 -14 2263 119 0 0 chr12 33835458 33835761 -110446728 + AluSx SINE Alu 1 303 -9 372 22 0 0 chr12 33835761 33835806 -110446683 + (CA)n Simple_repeat Simple_repeat 2 46 0 2179 163 22 38 chr12 33835896 33836349 -110446140 + L1MB8 LINE L1 5733 6178 0 2398 77 0 0 chr12 33836360 33836646 -110445843 + AluY SINE Alu 1 286 -25 821 143 0 57 chr12 33836795 33836935 -110445554 + FLAM_C SINE Alu 2 133 0 1002 153 0 29 chr12 33837078 33837248 -110445241 - FRAM SINE Alu -11 165 1 204 227 236 45 chr12 33837287 33837397 -110445092 - MIR SINE MIR -112 150 20 2271 105 7 3 chr12 33837438 33837732 -110444757 + AluSx SINE Alu 1 295 -17 1930 154 0 19 chr12 33837808 33838120 -110444369 + AluJb SINE Alu 1 306 -6 214 148 0 56 chr12 33838249 33838303 -110444186 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1666 184 10 16 chr12 33839410 33839715 -110442774 + AluJo SINE Alu 1 303 -9 24 0 0 0 chr12 33839768 33839792 -110442697 + AT_rich Low_complexity Low_complexity 1 24 0 2455 75 0 0 chr12 33839839 33840133 -110442356 - AluSg SINE Alu -16 294 1 2956 222 63 10 chr12 33840477 33841099 -110441390 + MSTD-int LTR MaLR 1081 1735 0 1393 160 113 73 chr12 33841099 33841480 -110441009 + MSTD LTR MaLR 1 396 0 290 154 46 15 chr12 33841482 33841547 -110440942 + LTR67 LTR ERVL 491 557 0 579 294 0 36 chr12 33841579 33841803 -110440686 + MIR SINE MIR 35 249 -13 26 0 0 0 chr12 33841813 33841839 -110440650 + AT_rich Low_complexity Low_complexity 1 26 0 1070 98 0 0 chr12 33842077 33842220 -110440269 + AluSg/x SINE Alu 168 310 0 562 271 147 55 chr12 33842224 33842626 -110439863 - MLT1L LTR MaLR -13 602 164 2004 154 0 0 chr12 33842659 33842951 -110439538 + AluJb SINE Alu 1 292 -20 30 0 0 0 chr12 33842951 33842981 -110439508 + AT_rich Low_complexity Low_complexity 1 30 0 407 250 106 0 chr12 33843781 33843885 -110438604 - L2 LINE L2 0 3313 3199 2101 106 6 42 chr12 33844405 33844717 -110437772 - AluSq SINE Alu -12 301 1 21 36 0 0 chr12 33844758 33844786 -110437703 + AT_rich Low_complexity Low_complexity 1 28 0 1147 190 109 78 chr12 33845075 33845125 -110437364 + L1ME LINE L1 4897 4944 -1202 1828 175 3 13 chr12 33845125 33845440 -110437049 - AluJb SINE Alu 0 312 1 1147 190 109 78 chr12 33845440 33845769 -110436720 + L1ME LINE L1 4944 5291 -855 2154 131 0 6 chr12 33845769 33846083 -110436406 + AluSx SINE Alu 1 312 0 1147 190 109 78 chr12 33846083 33846097 -110436392 + L1ME LINE L1 5291 5303 -843 1501 151 98 4 chr12 33846304 33846569 -110435920 + MLT1B LTR MaLR 24 313 -77 22 0 0 0 chr12 33846626 33846648 -110435841 + AT_rich Low_complexity Low_complexity 1 22 0 2489 80 0 0 chr12 33846872 33847173 -110435316 + AluY SINE Alu 1 301 -10 257 224 104 0 chr12 33847719 33847786 -110434703 + HsTC2 DNA Tc2 5 78 -1820 207 0 0 0 chr12 33847788 33847811 -110434678 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 247 123 0 70 chr12 33847882 33847939 -110434550 + L1ME LINE L1 5294 5346 -998 599 120 11 0 chr12 33847939 33848031 -110434458 - AluSg/x SINE Alu -14 296 204 791 136 21 21 chr12 33848031 33848171 -110434318 + L1ME LINE L1 5336 5475 -687 464 243 33 55 chr12 33848264 33848445 -110434044 + L1MC4 LINE L1 6866 7042 -1000 801 174 0 14 chr12 33848449 33848593 -110433896 + FRAM SINE Alu 1 40 0 590 250 91 27 chr12 33848662 33848882 -110433607 + L1MC5 LINE L1 7000 7233 -728 421 241 64 80 chr12 33848986 33849235 -110433254 + L1MC5 LINE L1 7260 7504 -457 336 113 38 0 chr12 33849303 33849356 -110433133 - LTR24B LTR ERV1 -5 571 517 1341 140 0 0 chr12 33849356 33849556 -110432933 + L1PB4 LINE L1 5799 5998 -158 717 154 0 0 chr12 33849560 33849670 -110432819 + AluSq/x SINE Alu 2 111 -202 264 169 197 56 chr12 33849671 33849731 -110432758 + FLAM_A SINE Alu 41 91 -211 419 29 58 0 chr12 33849731 33849800 -110432689 + (CAAAA)n Simple_repeat Simple_repeat 1 73 0 827 120 92 7 chr12 33849800 33849942 -110432547 + L1PB4 LINE L1 5998 6151 -5 623 268 57 25 chr12 33849943 33850260 -110432229 - LTR24B LTR ERV1 -43 533 207 298 177 127 28 chr12 33850301 33850391 -110432098 - LTR24B LTR ERV1 -370 95 1 1637 154 0 0 chr12 33850698 33850938 -110431551 - AluJo SINE Alu -21 291 52 606 151 8 59 chr12 33850951 33851070 -110431419 + AluJo/FLAM SINE Alu 10 122 -190 1077 173 0 17 chr12 33851070 33851249 -110431240 - AluSg/x SINE Alu -18 294 119 1795 112 0 0 chr12 33851262 33851494 -110430995 - AluSg SINE Alu -18 292 61 4008 256 82 24 chr12 33851597 33852120 -110430369 - L2 LINE L2 -497 2817 2326 2186 124 0 3 chr12 33852120 33852426 -110430063 + AluSx SINE Alu 1 305 -7 4008 256 82 24 chr12 33852426 33853338 -110429151 - L2 LINE L2 -988 2326 1299 828 219 0 0 chr12 33853406 33853552 -110428937 + FRAM SINE Alu 1 146 -30 501 62 0 0 chr12 33853552 33853617 -110428872 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 954 239 70 78 chr12 33853633 33854006 -110428483 - L2 LINE L2 -2606 708 339 1474 172 128 0 chr12 33854353 33854603 -110427886 + AluSx SINE Alu 1 282 -30 378 0 0 0 chr12 33854712 33854754 -110427735 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 9132 32 4 0 chr12 33854754 33856590 -110425899 - L1PA3 LINE L1 -13 6142 4301 2376 83 3 0 chr12 33856603 33856893 -110425596 + AluSp SINE Alu 2 292 -21 2196 226 125 22 chr12 33856894 33857581 -110424908 - L1 LINE L1 -1722 4424 3667 2137 134 16 0 chr12 33857598 33857904 -110424585 - AluSx SINE Alu -1 311 1 1851 144 35 3 chr12 33857904 33858084 -110424405 - AluJb SINE Alu -2 310 116 246 32 0 0 chr12 33858084 33858115 -110424374 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1851 144 35 3 chr12 33858115 33858218 -110424271 - AluJb SINE Alu -196 116 18 1471 212 67 67 chr12 33859432 33859928 -110422561 + MLT1D LTR MaLR 8 503 -2 600 192 0 25 chr12 33859928 33860045 -110422444 + MER106B DNA MER1_type 25 138 -921 1156 128 48 0 chr12 33860045 33860233 -110422256 - Tigger1 DNA MER2_type 0 2418 2222 2113 123 3 23 chr12 33860238 33860538 -110421951 + AluSp SINE Alu 1 294 -19 2180 205 28 37 chr12 33860656 33861222 -110421267 - L1M4 LINE L1 -1136 5010 4450 2032 131 8 64 chr12 33861222 33861409 -110421080 + MER47A DNA MER2_type 1 197 -2126 2273 116 0 3 chr12 33861409 33861710 -110420779 + AluSx SINE Alu 1 300 -12 2032 131 8 64 chr12 33861710 33861838 -110420651 + MER47A DNA MER2_type 197 293 -2030 2229 110 0 31 chr12 33861838 33862157 -110420332 - AluSx SINE Alu -3 309 1 2032 131 8 64 chr12 33862157 33862228 -110420261 + MER47A DNA MER2_type 293 366 0 7701 29 2 13 chr12 33862267 33863549 -110418940 - L1PA4 LINE L1 -6 6149 4871 1810 141 0 0 chr12 33863754 33864016 -110418473 + AluSx SINE Alu 40 301 -11 295 141 31 0 chr12 33864180 33864244 -110418245 + CT-rich Low_complexity Low_complexity 1 66 0 1608 149 104 7 chr12 33865346 33865615 -110416874 + AluJb SINE Alu 3 297 -15 186 133 0 0 chr12 33866468 33866498 -110415991 + (T)n Simple_repeat Simple_repeat 1 30 0 1153 95 0 6 chr12 33866498 33866656 -110415833 - LTR17 LTR ERV1 -454 326 170 748 103 0 0 chr12 33866705 33866812 -110415677 - AluY SINE Alu -7 304 198 2394 80 10 0 chr12 33867000 33867302 -110415187 - AluY SINE Alu -5 306 2 2431 88 0 0 chr12 33867307 33867603 -110414886 - AluSx SINE Alu -16 296 1 2161 124 3 0 chr12 33867794 33868092 -110414397 - AluSx SINE Alu -13 299 1 2120 125 7 0 chr12 33868092 33868388 -110414101 - AluSq SINE Alu -15 298 1 234 0 0 0 chr12 33868398 33868424 -110414065 + (T)n Simple_repeat Simple_repeat 1 26 0 283 291 119 0 chr12 33868841 33868975 -110413514 + MIR SINE MIR 79 228 -34 1263 142 17 43 chr12 33869725 33869957 -110412532 + AluSg/x SINE Alu 85 310 -2 2310 103 0 7 chr12 33870261 33870571 -110411918 - AluSx SINE Alu -4 308 1 1689 138 24 71 chr12 33871222 33871411 -110411078 - AluJb SINE Alu 0 307 137 2504 63 0 3 chr12 33871411 33871713 -110410776 - AluY SINE Alu -10 301 1 1689 138 24 71 chr12 33871713 33871844 -110410645 - AluJb SINE Alu -170 137 1 2109 141 0 13 chr12 33871966 33872271 -110410218 - AluSx SINE Alu -11 301 1 2464 73 0 19 chr12 33872577 33872894 -110409595 - AluY SINE Alu 0 311 1 2347 75 34 0 chr12 33872896 33873188 -110409301 - AluSp SINE Alu -11 302 1 1701 191 7 3 chr12 33873189 33873493 -110408996 - AluJo SINE Alu -7 305 1 1018 168 51 141 chr12 33874210 33874613 -110407876 + MER67C LTR ERV1 2 372 -338 391 274 44 15 chr12 33874623 33874758 -110407731 - MLT1A2 LTR MaLR -50 324 186 2786 147 8 24 chr12 33874799 33875183 -110407306 + L1MA7 LINE L1 5787 6163 -128 1863 175 0 13 chr12 33875183 33875491 -110406998 + AluJo SINE Alu 1 304 -8 2786 147 8 24 chr12 33875491 33875597 -110406892 + L1MA7 LINE L1 6163 6269 -22 2145 89 3 0 chr12 33875687 33875996 -110406493 + AluY SINE Alu 1 310 0 755 190 0 0 chr12 33876156 33876298 -110406191 - FLAM_C SINE Alu 0 143 2 1836 170 3 3 chr12 33876310 33876622 -110405867 - AluJb SINE Alu 0 312 1 1887 148 3 17 chr12 33876631 33876790 -110405699 - AluJb SINE Alu -9 293 138 2263 110 0 23 chr12 33876790 33876961 -110405528 - AluSx SINE Alu -11 301 139 1994 110 68 0 chr12 33876961 33877242 -110405247 - AluSx SINE Alu -12 300 1 2263 110 0 23 chr12 33877242 33877378 -110405111 - AluSx SINE Alu -173 139 1 1887 148 3 17 chr12 33877378 33877515 -110404974 - AluJb SINE Alu -164 138 1 1476 211 65 16 chr12 33877562 33877884 -110404605 - MLT1C LTR MaLR 0 467 130 1230 194 61 5 chr12 33877884 33878165 -110404324 + MSTB LTR MaLR 1 328 -100 1874 176 48 53 chr12 33878165 33878627 -110403862 - LTR10B LTR ERV1 0 547 1 686 111 10 0 chr12 33878627 33878726 -110403763 + MSTB LTR MaLR 329 428 -4 610 128 32 72 chr12 33878732 33878857 -110403632 - MLT1C LTR MaLR -334 133 14 1660 158 7 61 chr12 33879068 33879191 -110403298 + AluJb SINE Alu 18 146 -166 2203 110 0 0 chr12 33879191 33879511 -110402978 + AluSx SINE Alu 1 320 0 1660 158 7 61 chr12 33879511 33879683 -110402806 + AluJb SINE Alu 146 298 -14 800 198 95 102 chr12 33879814 33880225 -110402264 - MER92C LTR ERV1 -2 552 57 2282 99 0 13 chr12 33880342 33880677 -110401812 - AluY SINE Alu 0 311 1 2164 97 23 16 chr12 33880707 33881017 -110401472 - AluSp SINE Alu -1 312 1 2215 128 0 0 chr12 33881029 33881326 -110401163 - AluSx SINE Alu -15 297 1 1951 123 33 0 chr12 33881333 33881488 -110401001 - AluSg SINE Alu -22 288 119 234 0 0 0 chr12 33881488 33881514 -110400975 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1951 123 33 0 chr12 33881514 33881634 -110400855 - AluSg SINE Alu -191 119 4 259 170 0 21 chr12 33881642 33881689 -110400800 - MER92B LTR ERV1 -588 48 3 1209 273 120 27 chr12 33881893 33882486 -110400003 + Charlie7 DNA MER1_type 8 655 -1957 283 241 0 25 chr12 33882501 33882580 -110399909 + Charlie7 DNA MER1_type 2193 2269 -343 1903 108 0 0 chr12 33882580 33882830 -110399659 + AluSx SINE Alu 1 250 -62 464 136 0 0 chr12 33882831 33882941 -110399548 + AluSg/x SINE Alu 214 323 0 2254 95 0 7 chr12 33882967 33883263 -110399226 + MER1B DNA MER1_type 46 339 0 673 157 19 50 chr12 33883399 33883558 -110398931 - LTR37B LTR ERV1 0 468 315 2817 177 21 23 chr12 33883570 33884085 -110398404 + MLT2B3 LTR ERVL 1 514 -40 278 95 0 24 chr12 33884116 33884158 -110398331 + MLT2B3 LTR ERVL 506 546 -8 4396 127 55 24 chr12 33884206 33884832 -110397657 + Tigger3b DNA MER2_type 1 655 -2373 2355 100 3 0 chr12 33884832 33885131 -110397358 - AluSg SINE Alu -10 300 1 4396 127 55 24 chr12 33885131 33885245 -110397244 + Tigger3b DNA MER2_type 655 764 -467 1314 138 14 14 chr12 33885252 33885462 -110397027 + AluJo SINE Alu 85 294 -18 1436 124 5 5 chr12 33885483 33885692 -110396797 + AluJb SINE Alu 89 297 -15 939 115 47 0 chr12 33885712 33885855 -110396634 + Tigger3b DNA MER2_type 778 927 -304 1570 161 193 45 chr12 33885855 33886259 -110396230 + LTR44 LTR ERV1 1 464 -55 496 81 0 68 chr12 33886249 33886297 -110396192 + Tigger3b DNA MER2_type 1097 1140 -1888 * 1025 268 52 69 chr12 33886297 33886976 -110395513 + PABL_B LTR ERV1 1 667 0 496 81 0 68 chr12 33886976 33887001 -110395488 + Tigger3b DNA MER2_type 1140 1165 -66 180 0 0 0 chr12 33887026 33887046 -110395443 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1773 148 11 14 chr12 33887048 33887197 -110395292 - AluSx SINE Alu -30 282 133 2076 108 7 3 chr12 33887197 33887492 -110394997 - AluSg SINE Alu -14 296 1 1773 148 11 14 chr12 33887492 33887625 -110394864 - AluSx SINE Alu -179 133 1 383 74 19 0 chr12 33887625 33887679 -110394810 + LTR44 LTR ERV1 465 519 0 1639 122 129 0 chr12 33887679 33887950 -110394539 + Tigger3b DNA MER2_type 924 1229 -2 320 174 12 58 chr12 33887970 33888056 -110394433 - LTR37B LTR ERV1 -243 225 144 543 292 39 7 chr12 33888075 33888229 -110394260 + MER58A DNA MER1_type 14 172 -52 3282 92 14 0 chr12 33888356 33888782 -110393707 + LTR3 LTR ERVK 1 432 0 4310 92 0 0 chr12 33888884 33889438 -110393051 + MER41A LTR ERV1 1 554 0 279 164 0 18 chr12 33889438 33889493 -110392996 - LTR37B LTR ERV1 -408 60 7 194 219 0 0 chr12 33889577 33889618 -110392871 - L2 LINE L2 -5 3308 3268 2630 57 0 0 chr12 33889712 33890010 -110392479 - AluY SINE Alu -11 300 3 2525 66 0 7 chr12 33890023 33890327 -110392162 - AluY SINE Alu -9 302 1 949 192 0 0 chr12 33890475 33890647 -110391842 - AluJb SINE Alu -9 303 132 2257 110 0 0 chr12 33890660 33890959 -110391530 + AluSx SINE Alu 1 299 -13 922 276 45 55 chr12 33891239 33891997 -110390492 + L1MC/D LINE L1 4698 5437 -743 21 36 0 0 chr12 33892052 33892080 -110390409 + AT_rich Low_complexity Low_complexity 1 28 0 2220 120 0 17 chr12 33892090 33892391 -110390098 - AluSx SINE Alu -16 296 1 1937 149 3 23 chr12 33892796 33893105 -110389384 - AluJb SINE Alu -9 303 1 215 300 22 22 chr12 33893296 33893386 -110389103 + L2 LINE L2 2684 2773 -541 229 279 118 43 chr12 33894003 33894257 -110388232 + L2 LINE L2 2811 3083 -189 200 35 35 0 chr12 33894278 33894307 -110388182 + (TTA)n Simple_repeat Simple_repeat 2 31 0 399 267 127 6 chr12 33894320 33894485 -110388004 - MIR SINE MIR -8 254 70 212 271 17 0 chr12 33894622 33894681 -110387808 + L2 LINE L2 3213 3272 0 2278 87 3 3 chr12 33894972 33895271 -110387218 - AluSx SINE Alu -13 299 1 676 191 87 16 chr12 33895479 33895662 -110386827 + L2 LINE L2 2709 2904 -410 469 296 17 43 chr12 33895658 33895891 -110386598 + L2 LINE L2 3032 3258 -55 * 2530 74 0 3 chr12 33896347 33896659 -110385830 - AluY SINE Alu 0 311 1 2501 70 7 3 chr12 33896659 33896961 -110385528 - AluSq SINE Alu -10 303 1 12821 117 23 50 chr12 33896961 33897382 -110385107 - Tigger1 DNA MER2_type -330 2088 1657 578 157 78 17 chr12 33897382 33897497 -110384992 - FLAM_C SINE Alu -11 122 1 12821 117 23 50 chr12 33897497 33898444 -110384045 - Tigger1 DNA MER2_type -761 1657 686 2330 81 13 19 chr12 33898444 33898754 -110383735 + AluY SINE Alu 1 308 -3 12821 117 23 50 chr12 33898754 33899226 -110383263 - Tigger1 DNA MER2_type -1732 686 203 2178 116 0 7 chr12 33899226 33899511 -110382978 - AluSg SINE Alu -27 283 1 12821 117 23 50 chr12 33899511 33899626 -110382863 - Tigger1 DNA MER2_type -2215 203 192 2368 88 10 7 chr12 33899626 33899932 -110382557 + AluSg SINE Alu 1 307 -3 12821 117 23 50 chr12 33899932 33900119 -110382370 - Tigger1 DNA MER2_type -2226 192 1 239 224 143 31 chr12 33900119 33900203 -110382286 + MER106B DNA MER1_type 962 1056 -3 1811 164 0 35 chr12 33900637 33900948 -110381541 + AluJo SINE Alu 1 300 -12 2411 80 0 0 chr12 33901252 33901551 -110380938 - AluY SINE Alu -12 299 1 325 311 22 49 chr12 33901915 33902098 -110380391 + L3 LINE CR1 1328 1505 -72 278 303 30 20 chr12 33902389 33902488 -110380001 + Charlie8 DNA MER1_type 121 220 -2197 316 119 45 0 chr12 33902492 33902559 -110379930 + C-rich Low_complexity Low_complexity 3 72 0 2237 114 3 0 chr12 33902559 33902858 -110379631 - AluSx SINE Alu -12 300 1 1713 187 3 7 chr12 33902858 33903157 -110379332 - AluJb SINE Alu 0 312 14 2033 152 0 0 chr12 33904557 33904859 -110377630 - AluSx SINE Alu -10 302 1 2242 112 0 3 chr12 33905274 33905569 -110376920 - AluSx SINE Alu -18 294 1 274 366 139 28 chr12 33905584 33905800 -110376689 - MIR SINE MIR 0 262 23 182 224 0 13 chr12 33905898 33905929 -110376560 + (TA)n Simple_repeat Simple_repeat 2 32 -44 1749 178 8 37 chr12 33905929 33906306 -110376183 + MER47A DNA MER2_type 1 366 0 182 224 0 13 chr12 33906306 33906350 -110376139 + (TA)n Simple_repeat Simple_repeat 32 76 0 222 62 0 0 chr12 33906824 33906856 -110375633 + (TG)n Simple_repeat Simple_repeat 1 32 0 2233 96 7 3 chr12 33907029 33907330 -110375159 - AluSc SINE Alu -7 302 1 185 0 40 0 chr12 33907937 33907962 -110374527 + (TTG)n Simple_repeat Simple_repeat 2 27 0 975 51 8 0 chr12 33907964 33908082 -110374407 - AluSg/x SINE Alu -24 285 167 2353 89 3 0 chr12 33908942 33909244 -110373245 - AluSx SINE Alu -9 303 1 218 245 137 20 chr12 33909321 33909423 -110373066 + L2 LINE L2 3197 3310 -3 2339 99 3 3 chr12 33909594 33909907 -110372582 + AluSq SINE Alu 1 313 0 416 50 0 17 chr12 33909915 33909975 -110372514 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 188 235 61 52 chr12 33910443 33910558 -110371931 + L2 LINE L2 3080 3195 -118 1759 235 97 67 chr12 33910607 33911657 -110370832 - L1ME3A LINE L1 -16 6154 5078 511 311 0 0 chr12 33913387 33913509 -110368980 - L2 LINE L2 -14 3258 3137 204 297 81 43 chr12 33913754 33913939 -110368550 - L2 LINE L2 -858 2456 2265 478 204 12 31 chr12 33914239 33914401 -110368088 + CT-rich Low_complexity Low_complexity 4 162 0 1693 177 37 3 chr12 33914408 33914702 -110367787 - AluJo SINE Alu -8 304 1 1707 194 0 10 chr12 33915327 33915626 -110366863 + AluJb SINE Alu 1 296 -16 2019 150 0 0 chr12 33916209 33916503 -110365986 + AluSx SINE Alu 2 295 -17 1304 214 31 21 chr12 33917160 33917362 -110365127 - MLT1A1 LTR MaLR -73 292 85 2580 109 37 0 chr12 33917362 33917712 -110364777 - THE1B LTR MaLR -1 363 1 1304 214 31 21 chr12 33917712 33917798 -110364691 - MLT1A1 LTR MaLR -280 85 1 256 238 32 0 chr12 33918147 33918210 -110364279 - MER91B DNA MER1_type -125 65 1 2177 96 0 0 chr12 33919426 33919707 -110362782 - AluSx SINE Alu -11 301 21 1568 164 96 11 chr12 33919716 33919996 -110362493 - AluJo SINE Alu -8 304 1 3090 154 11 11 chr12 33920381 33920907 -110361582 - L1PA16 LINE L1 0 6166 5641 1456 173 4 0 chr12 33920986 33921223 -110361266 + AluJb SINE Alu 42 279 -33 330 181 43 9 chr12 33921223 33921339 -110361150 + (TA)n Simple_repeat Simple_repeat 2 121 0 216 170 38 19 chr12 33924399 33924452 -110358037 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 221 224 0 59 chr12 33924459 33924544 -110357945 + MIR SINE MIR 183 262 0 332 266 11 11 chr12 33924927 33925021 -110357468 - Zaphod DNA AcHobo 0 4031 3938 586 229 65 18 chr12 33925321 33925491 -110356998 + MIR SINE MIR 15 192 -70 706 153 21 90 chr12 33925491 33925567 -110356922 + AluJb SINE Alu 2 65 -247 2467 80 0 6 chr12 33925567 33925879 -110356610 - AluSq SINE Alu -3 310 1 706 153 21 90 chr12 33925879 33925946 -110356543 + AluJb SINE Alu 65 135 -177 248 267 107 0 chr12 33925965 33926040 -110356449 + MIR SINE MIR 180 262 0 354 266 65 57 chr12 33926240 33926364 -110356125 + L2 LINE L2 3145 3269 -3 2255 100 3 0 chr12 33926413 33926704 -110355785 - AluSx SINE Alu -20 292 1 464 267 71 53 chr12 33927397 33927622 -110354867 + MIR SINE MIR 32 260 -2 346 333 23 38 chr12 33929193 33929325 -110353164 + L2 LINE L2 3137 3266 -6 353 274 58 16 chr12 33929920 33930093 -110352396 + MIR SINE MIR 81 261 -1 3370 155 42 33 chr12 33930148 33930170 -110352319 + L1MB8 LINE L1 5146 5166 -1012 1758 133 0 84 chr12 33930170 33930492 -110351997 + AluJo SINE Alu 1 295 -17 3370 155 42 33 chr12 33930492 33931247 -110351242 + L1MB8 LINE L1 5166 5919 -259 1847 150 6 26 chr12 33931247 33931560 -110350929 - AluJb SINE Alu -5 307 1 487 283 0 26 chr12 33931763 33931915 -110350574 + MIR SINE MIR 70 217 -45 506 312 7 0 chr12 33932891 33933029 -110349460 + MER91B DNA MER1_type 1 139 -51 6046 48 39 17 chr12 33933180 33933734 -110348755 + MER4E LTR ERV1 1 577 -189 2426 79 3 10 chr12 33933734 33934038 -110348451 - AluSc SINE Alu -7 302 1 6046 48 39 17 chr12 33934038 33934233 -110348256 + MER4E LTR ERV1 577 766 0 638 147 101 0 chr12 33934395 33934524 -110347965 - L1MA8 LINE L1 -2 6289 6148 659 62 73 0 chr12 33935013 33935109 -110347380 - L1MA8 LINE L1 -141 6150 6048 1281 28 0 0 chr12 33935330 33935474 -110347015 + L1PA5 LINE L1 6011 6154 0 921 187 39 124 chr12 33935575 33935906 -110346583 + MER46C DNA MER2_type 20 322 -16 26 50 0 0 chr12 33936648 33936688 -110345801 + AT_rich Low_complexity Low_complexity 1 40 0 360 313 60 8 chr12 33936732 33936866 -110345623 - MIR SINE MIR -1 261 121 256 329 114 19 chr12 33936878 33937036 -110345453 + MER20 DNA MER1_type 2 174 -45 385 290 122 0 chr12 33937713 33937844 -110344645 - MER5A DNA MER1_type -30 159 13 2294 103 7 3 chr12 33938210 33938520 -110343969 - AluSq SINE Alu -2 311 1 2299 87 6 6 chr12 33938710 33939021 -110343468 + AluY SINE Alu 1 311 0 1587 164 31 45 chr12 33940199 33940517 -110341972 - AluJb SINE Alu 0 314 1 23 0 0 0 chr12 33940953 33940976 -110341513 + AT_rich Low_complexity Low_complexity 1 23 0 401 232 49 76 chr12 33941091 33941158 -110341331 - MLT1J LTR MaLR -4 507 440 2431 80 3 3 chr12 33941158 33941460 -110341029 - AluY SINE Alu -9 302 1 401 232 49 76 chr12 33941460 33941577 -110340912 - MLT1J LTR MaLR -71 440 328 530 307 74 5 chr12 33941637 33941852 -110340637 - MLT1J LTR MaLR -276 235 6 1734 169 6 32 chr12 33942011 33942325 -110340164 + AluJb SINE Alu 1 306 -6 680 273 29 54 chr12 33942900 33943067 -110339422 + Charlie8 DNA MER1_type 1 162 -179 2415 85 0 0 chr12 33943067 33943374 -110339115 + AluY SINE Alu 1 307 -4 680 273 29 54 chr12 33943374 33943448 -110339041 + Charlie8 DNA MER1_type 162 236 -105 1839 168 7 7 chr12 33943456 33943760 -110338729 - AluJb SINE Alu -8 304 1 2368 88 0 25 chr12 33944302 33944621 -110337868 + AluY SINE Alu 1 311 0 2430 64 0 7 chr12 33944850 33945146 -110337343 + AluY SINE Alu 1 294 -17 1004 244 25 0 chr12 33945149 33945350 -110337139 + MER58A DNA MER1_type 16 221 -3 1074 167 235 0 chr12 33945450 33945671 -110336818 - AluJb SINE Alu -39 273 1 2524 69 3 0 chr12 33946360 33946664 -110335825 - AluSp SINE Alu -8 305 1 2209 92 0 33 chr12 33946666 33946971 -110335518 - AluSg SINE Alu -13 297 3 1944 154 13 16 chr12 33947044 33947349 -110335140 - AluJb SINE Alu -8 304 1 255 279 0 0 chr12 33947356 33947417 -110335072 - L2 LINE L2 -2 3311 3251 1624 139 58 30 chr12 33947757 33948052 -110334437 + AluSx SINE Alu 1 303 -9 2397 97 0 3 chr12 33948696 33949006 -110333483 + AluSc SINE Alu 1 309 0 2247 117 3 0 chr12 33949300 33949600 -110332889 + AluSx SINE Alu 1 301 -11 183 42 0 0 chr12 33949672 33949696 -110332793 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 199 345 71 24 chr12 33949752 33949836 -110332653 + L2 LINE L2 3150 3237 -35 2485 97 0 0 chr12 33950142 33950453 -110332036 - AluSx SINE Alu -1 311 1 1283 121 0 0 chr12 33950607 33950781 -110331708 - AluSg/x SINE Alu -5 305 132 577 286 74 65 chr12 33951350 33951623 -110330866 + L1ME4a LINE L1 5529 5809 -312 2281 90 0 39 chr12 33951623 33951935 -110330554 + AluSx SINE Alu 1 300 -12 577 286 74 65 chr12 33951935 33952136 -110330353 + L1ME4a LINE L1 5809 6007 -114 637 203 50 33 chr12 33952610 33952750 -110329739 + L1ME3 LINE L1 5786 5932 -230 1552 158 119 112 chr12 33952750 33953213 -110329276 + MLT1C LTR MaLR 1 466 -1 637 203 50 33 chr12 33953213 33953280 -110329209 + L1ME3 LINE L1 5932 5996 -166 1847 163 17 0 chr12 33953402 33953690 -110328799 - AluJb SINE Alu -17 295 3 1768 157 39 14 chr12 33953712 33953998 -110328491 - AluJb SINE Alu -19 293 1 2028 189 65 27 chr12 33954320 33954769 -110327720 - MER31B LTR ERV1 0 466 1 2153 100 4 0 chr12 33955570 33955841 -110326648 + AluSc SINE Alu 1 272 -37 201 39 0 0 chr12 33955846 33955872 -110326617 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 332 261 143 56 chr12 33956075 33956236 -110326253 + L2 LINE L2 2806 2980 -333 449 259 61 8 chr12 33956236 33956367 -110326122 - Charlie4a DNA MER1_type 0 508 371 2147 129 7 0 chr12 33956375 33956669 -110325820 - AluSx SINE Alu -16 296 1 25 0 0 0 chr12 33956672 33956697 -110325792 + AT_rich Low_complexity Low_complexity 1 25 0 1784 136 12 59 chr12 33956703 33957026 -110325463 + AluJb SINE Alu 1 308 -4 794 253 130 75 chr12 33957051 33957413 -110325076 + MLT1H LTR MaLR 5 447 -102 2447 79 0 3 chr12 33957413 33957718 -110324771 + AluY SINE Alu 1 304 -7 794 253 130 75 chr12 33957718 33957828 -110324661 + MLT1H LTR MaLR 447 549 0 * 1324 228 46 3 chr12 33957828 33958130 -110324359 - Charlie4a DNA MER1_type -177 331 17 359 213 32 21 chr12 33958167 33958261 -110324228 + L2 LINE L2 3005 3099 -214 277 368 0 17 chr12 33960035 33960152 -110322337 - L2 LINE L2 -210 3062 2948 250 348 65 19 chr12 33960554 33960709 -110321780 - L2 LINE L2 -557 2757 2596 368 287 276 8 chr12 33961436 33961823 -110320666 + L2 LINE L2 718 1208 -2106 323 22 0 22 chr12 33961845 33961890 -110320599 + (GAGTG)n Simple_repeat Simple_repeat 5 48 0 203 290 16 16 chr12 33961890 33961952 -110320537 + MIR SINE MIR 18 79 -183 554 272 166 30 chr12 33962356 33962687 -110319802 + L2 LINE L2 1871 2246 -1068 462 284 88 109 chr12 33962689 33962814 -110319675 + L2 LINE L2 2792 2918 -395 1613 132 0 0 chr12 33962814 33963041 -110319448 + AluJb SINE Alu 86 312 0 462 284 88 109 chr12 33963041 33963375 -110319114 + L2 LINE L2 2918 3268 -45 651 233 7 0 chr12 33964180 33964326 -110318163 + MER103 DNA DNA 13 159 -7 2096 221 29 54 chr12 33964523 33965079 -110317410 + MER34 LTR ERV1 1 542 0 2103 104 7 0 chr12 33965131 33965431 -110317058 - AluSp SINE Alu 0 303 2 1431 171 10 48 chr12 33965852 33966144 -110316345 - L1MB8 LINE L1 -11 6167 5887 288 0 0 0 chr12 33966353 33966385 -110316104 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2319 59 0 10 chr12 33966387 33966676 -110315813 - AluY SINE Alu -23 288 3 2220 117 0 0 chr12 33967840 33968138 -110314351 - AluSx SINE Alu -14 298 1 227 94 0 0 chr12 33968352 33968384 -110314105 + L1PA16 LINE L1 6030 6061 -105 361 102 17 0 chr12 33968385 33968444 -110314045 + L1PA16 LINE L1 6098 6157 -9 2562 34 40 25 chr12 33968578 33968899 -110313590 - LTR17 LTR ERV1 -454 326 1 2177 68 0 0 chr12 33968899 33969165 -110313324 - HERV17 LTR ERV1 0 8626 8361 250 65 0 0 chr12 33969164 33969195 -110313294 - HERV17 LTR ERV1 -8595 31 1 * 3946 57 21 30 chr12 33969195 33969725 -110312764 - LTR17 LTR ERV1 0 780 256 776 265 19 67 chr12 33970232 33970500 -110311989 - MIR SINE MIR -5 257 3 27 29 0 0 chr12 33970606 33970640 -110311849 + AT_rich Low_complexity Low_complexity 1 34 0 2884 106 7 2 chr12 33971140 33971544 -110310945 + MER61B LTR ERV1 20 425 0 750 110 0 20 chr12 33972524 33972624 -110309865 - AluSg/x SINE Alu -130 180 83 3523 79 7 0 chr12 33972626 33973068 -110309421 + PABL_A LTR ERV1 216 660 0 227 355 65 0 chr12 33973240 33973364 -110309125 - MIR3 SINE MIR -75 133 2 1131 231 40 35 chr12 33973457 33973822 -110308667 - LTR24B LTR ERV1 0 514 145 1896 138 24 0 chr12 33975113 33975402 -110307087 - AluSg SINE Alu -14 296 1 652 162 196 0 chr12 33976138 33976286 -110306203 + MER5A DNA MER1_type 7 183 -6 2077 106 0 0 chr12 33976471 33976736 -110305753 - AluSx SINE Alu -47 265 1 21 57 0 0 chr12 33977112 33977147 -110305342 + AT_rich Low_complexity Low_complexity 1 35 0 1605 162 39 18 chr12 33977152 33977436 -110305053 + AluJo SINE Alu 1 290 -22 463 237 57 48 chr12 33977557 33977785 -110304704 + L1M4 LINE L1 5038 5267 -879 398 244 41 111 chr12 33977787 33977959 -110304530 - L2 LINE L2 -4 3309 3150 2116 100 0 4 chr12 33978376 33978646 -110303843 - AluSx SINE Alu -14 298 30 1753 158 16 50 chr12 33979500 33979823 -110302666 - AluJo SINE Alu 0 312 1 720 327 37 11 chr12 33979924 33980279 -110302210 + L1MEc LINE L1 41 404 -5992 2213 113 0 3 chr12 33980461 33980754 -110301735 + AluSx SINE Alu 1 292 -20 287 336 80 36 chr12 33980877 33981014 -110301475 - L2 LINE L2 -9 3263 3121 * 791 298 29 4 chr12 33981008 33981253 -110301236 - MIR SINE MIR 0 262 12 21 36 0 0 chr12 33981303 33981331 -110301158 + AT_rich Low_complexity Low_complexity 1 28 0 2227 104 7 0 chr12 33981685 33981983 -110300506 - AluSg1 SINE Alu -9 300 1 1004 197 183 80 chr12 33982049 33982099 -110300390 - MLT1C LTR MaLR 0 467 424 1803 156 31 0 chr12 33982099 33982388 -110300101 - AluJb SINE Alu -14 298 1 1004 197 183 80 chr12 33982388 33982775 -110299714 - MLT1C LTR MaLR -43 424 1 244 180 60 0 chr12 33984029 33984079 -110298410 + L2 LINE L2 3255 3307 -6 360 270 15 96 chr12 33984528 33984615 -110297874 - MER112 DNA MER1_type -12 248 155 186 103 0 0 chr12 33984615 33984644 -110297845 + (AATAG)n Simple_repeat Simple_repeat 5 33 0 360 270 15 96 chr12 33984644 33984826 -110297663 - MER112 DNA MER1_type -105 155 1 445 263 211 0 chr12 33984854 33985006 -110297483 - Charlie8 DNA MER1_type -2163 254 71 2403 97 0 0 chr12 33985025 33985325 -110297164 + AluSp SINE Alu 1 300 -13 1046 239 31 50 chr12 33985519 33985837 -110296652 + MLT1I LTR MaLR 98 409 0 4332 177 61 42 chr12 33985899 33986835 -110295654 + LTR13 LTR ERVK 1 954 0 1143 210 60 118 chr12 33986841 33987461 -110295028 + L1ME3A LINE L1 5345 5873 -297 937 271 25 21 chr12 33987459 33987784 -110294705 - L1ME LINE L1 -371 5799 5474 * 2371 96 0 0 chr12 33988014 33988317 -110294172 - AluSc SINE Alu -6 303 1 258 311 85 9 chr12 33988478 33988584 -110293905 - MIR SINE MIR -57 151 38 533 223 14 126 chr12 33988723 33988900 -110293589 + MIR SINE MIR 33 176 -86 1884 167 10 0 chr12 33988900 33989199 -110293290 + AluJo SINE Alu 1 302 -10 533 223 14 126 chr12 33989199 33989263 -110293226 + MIR SINE MIR 176 246 -16 34 24 0 0 chr12 33989275 33989316 -110293173 + AT_rich Low_complexity Low_complexity 1 41 0 523 239 222 6 chr12 33989435 33989729 -110292760 - L2 LINE L2 -233 3080 2718 1667 181 7 104 chr12 33989871 33990285 -110292204 + MLT1A2 LTR MaLR 1 374 0 342 247 14 0 chr12 33990789 33990862 -110291627 - L2 LINE L2 -8 3305 3232 224 310 78 14 chr12 33991470 33991612 -110290877 - L2 LINE L2 -64 3249 3099 1914 149 0 34 chr12 33992067 33992388 -110290101 + AluJb SINE Alu 1 310 -2 3082 157 93 4 chr12 33992435 33992975 -110289514 + LTR69 LTR ERVL 1 588 0 474 74 78 15 chr12 33993013 33993270 -110289219 + (TA)n Simple_repeat Simple_repeat 1 273 0 498 307 35 61 chr12 33993271 33993646 -110288843 + L1MC4a LINE L1 5462 5826 -1982 979 179 22 6 chr12 33993729 33993908 -110288581 + MLT1D LTR MaLR 305 486 -19 1912 148 0 23 chr12 33994248 33994551 -110287938 - AluJb SINE Alu -16 296 1 705 204 121 46 chr12 33994838 33995078 -110287411 - MIR SINE MIR -3 259 2 3349 96 96 2 chr12 33996121 33996578 -110285911 + MER61D LTR ERV1 1 500 -1 1629 248 119 57 chr12 33996696 33997139 -110285350 + L2 LINE L2 1575 1989 -1325 2296 88 7 0 chr12 33997139 33997447 -110285042 - AluSx SINE Alu 0 312 1 2011 105 10 49 chr12 33997447 33997753 -110284736 - AluSx SINE Alu -18 294 1 1629 248 119 57 chr12 33997753 33997997 -110284492 + L2 LINE L2 1989 2317 -997 1532 173 76 0 chr12 33997997 33998274 -110284215 - AluJo SINE Alu -14 298 1 1629 248 119 57 chr12 33998274 33998343 -110284146 + L2 LINE L2 2317 2380 -934 511 252 36 22 chr12 33998396 33998535 -110283954 + L2 LINE L2 3173 3313 0 1711 197 0 0 chr12 33998604 33998894 -110283595 - AluJb SINE Alu -22 290 1 795 181 0 0 chr12 33998922 33999055 -110283434 - FLAM_A SINE Alu 0 133 1 2396 106 3 0 chr12 33999190 33999501 -110282988 - AluSx SINE Alu 0 312 1 568 248 213 5 chr12 33999523 33999725 -110282764 - MIR SINE MIR -14 248 5 950 51 0 0 chr12 33999893 34000011 -110282478 + AluY SINE Alu 190 307 -4 485 353 6 0 chr12 34000131 34000287 -110282202 - MIR SINE MIR -105 157 1 2486 81 0 0 chr12 34000323 34000620 -110281869 + AluSc SINE Alu 1 297 -12 1901 137 3 51 chr12 34001836 34002149 -110280340 + AluJb SINE Alu 1 298 -14 815 270 14 5 chr12 34002197 34002412 -110280077 - MIR SINE MIR -1 261 45 2076 124 6 19 chr12 34002691 34003006 -110279483 - AluSx SINE Alu -1 311 1 1832 145 35 3 chr12 34003007 34003186 -110279303 - AluJb SINE Alu -3 309 116 246 32 0 0 chr12 34003186 34003217 -110279272 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1832 145 35 3 chr12 34003217 34003320 -110279169 - AluJb SINE Alu -196 116 18 1526 213 62 66 chr12 34004534 34005032 -110277457 + MLT1D LTR MaLR 8 503 -2 606 192 0 25 chr12 34005032 34005149 -110277340 + MER106B DNA MER1_type 25 138 -921 1172 128 48 0 chr12 34005149 34005337 -110277152 - Tigger1 DNA MER2_type 0 2418 2222 2354 101 13 0 chr12 34005342 34005650 -110276839 + AluSp SINE Alu 1 312 -1 2264 228 65 41 chr12 34005659 34006270 -110276219 + L1ME1 LINE L1 5485 6110 -56 2047 130 35 0 chr12 34006270 34006554 -110275935 + AluSx SINE Alu 1 294 -18 328 232 21 32 chr12 34006831 34006926 -110275563 + MIR SINE MIR 168 261 -1 3673 121 112 26 chr12 34007214 34007722 -110274767 + Tigger1 DNA MER2_type 125 773 -1645 2202 119 3 0 chr12 34007722 34008024 -110274465 - AluSx SINE Alu -7 305 3 3673 121 112 26 chr12 34008024 34008283 -110274206 + Tigger1 DNA MER2_type 773 1008 -1410 912 199 74 98 chr12 34008295 34008621 -110273868 - MLT1A1 LTR MaLR -47 318 1 772 260 63 27 chr12 34008702 34008953 -110273536 + MIR SINE MIR 2 259 -3 2025 106 11 7 chr12 34009555 34009861 -110272628 - AluSg1 SINE Alu 0 307 1 281 24 49 0 chr12 34009873 34009914 -110272575 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 35 0 0 22 chr12 34009981 34010009 -110272480 + AT_rich Low_complexity Low_complexity 1 29 -16 8190 25 0 0 chr12 34010009 34011424 -110271065 - L1PA3 LINE L1 -3 6152 4737 35 0 0 22 chr12 34011424 34011441 -110271048 + AT_rich Low_complexity Low_complexity 29 45 0 2422 50 0 7 chr12 34012931 34013230 -110269259 + AluY SINE Alu 4 300 -11 1305 119 0 0 chr12 34013230 34013406 -110269083 + AluSg/x SINE Alu 134 309 -3 975 165 11 48 chr12 34013406 34013594 -110268895 - Tigger1 DNA MER2_type -2237 181 1 246 224 143 31 chr12 34013594 34013678 -110268811 + MER106B DNA MER1_type 962 1056 -3 1852 164 0 34 chr12 34014112 34014435 -110268054 + AluJo SINE Alu 1 312 0 2345 97 7 0 chr12 34014471 34014781 -110267708 - AluSp SINE Alu -1 312 1 295 141 31 0 chr12 34015528 34015592 -110266897 + GA-rich Low_complexity Low_complexity 1 66 0 1801 141 0 0 chr12 34015756 34016018 -110266471 - AluSx SINE Alu -11 301 40 8111 24 2 0 chr12 34016223 34017537 -110264952 + L1PA3 LINE L1 4871 6184 0 1459 167 130 0 chr12 34017650 34017896 -110264593 - AluSx SINE Alu -34 278 1 1063 239 70 78 chr12 34018243 34018616 -110263873 + L2 LINE L2 339 708 -2606 501 62 0 0 chr12 34018632 34018697 -110263792 + (TTTA)n Simple_repeat Simple_repeat 2 66 0 814 219 0 0 chr12 34018697 34018843 -110263646 - FRAM SINE Alu -30 146 1 4604 252 80 25 chr12 34018911 34019823 -110262666 + L2 LINE L2 1299 2324 -990 2167 124 0 3 chr12 34019823 34020129 -110262360 - AluSx SINE Alu -7 305 1 4604 252 80 25 chr12 34020129 34020674 -110261815 + L2 LINE L2 2324 2837 -477 1076 168 53 18 chr12 34020675 34020901 -110261588 + L1ME1 LINE L1 4760 4993 -1153 2596 193 64 58 chr12 34022612 34022659 -110259830 + L1ME1 LINE L1 5240 5285 -881 2302 113 3 0 chr12 34022659 34022970 -110259519 + AluSx SINE Alu 1 312 0 2596 193 64 58 chr12 34022970 34023171 -110259318 + L1ME1 LINE L1 5285 5483 -683 2348 100 10 3 chr12 34023171 34023481 -110259008 + AluSq SINE Alu 1 312 -1 2596 193 64 58 chr12 34023481 34024101 -110258388 + L1ME1 LINE L1 5483 6110 -56 2064 130 35 0 chr12 34024101 34024385 -110258104 + AluSx SINE Alu 1 294 -18 332 232 21 32 chr12 34024662 34024757 -110257732 + MIR SINE MIR 168 261 -1 3342 124 112 26 chr12 34025045 34025553 -110256936 + Tigger1 DNA MER2_type 125 773 -1645 2209 119 3 0 chr12 34025553 34025855 -110256634 - AluSx SINE Alu -7 305 3 3342 124 112 26 chr12 34025855 34026114 -110256375 + Tigger1 DNA MER2_type 773 1008 -1410 787 194 108 89 chr12 34026102 34026452 -110256037 - MLT1A1 LTR MaLR -22 406 1 * 778 260 63 27 chr12 34026533 34026784 -110255705 + MIR SINE MIR 2 259 -3 2021 106 11 7 chr12 34027385 34027691 -110254798 - AluSg1 SINE Alu 0 307 1 281 24 49 0 chr12 34027703 34027744 -110254745 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 35 0 0 22 chr12 34027811 34027839 -110254650 + AT_rich Low_complexity Low_complexity 1 29 -16 7659 23 0 0 chr12 34027839 34029253 -110253236 - L1PA3 LINE L1 -3 6152 4737 35 0 0 22 chr12 34029253 34029270 -110253219 + AT_rich Low_complexity Low_complexity 29 45 0 929 211 17 0 chr12 34030601 34030781 -110251708 + MER5A DNA MER1_type 2 184 -5 352 181 14 28 chr12 34031292 34031364 -110251125 + AluJ/FRAM SINE Alu 220 290 -12 21 0 0 0 chr12 34033027 34033048 -110249441 + AT_rich Low_complexity Low_complexity 1 21 0 2497 55 0 16 chr12 34033116 34033423 -110249066 - AluY SINE Alu -8 303 2 6261 187 63 65 chr12 34033683 34033849 -110248640 + L1MC4a LINE L1 5940 6105 -1703 2092 135 3 0 chr12 34033849 34034145 -110248344 - AluSx SINE Alu -15 297 1 6261 187 63 65 chr12 34034145 34035393 -110247096 + L1MC4a LINE L1 6105 7353 -455 2080 133 0 9 chr12 34035393 34035708 -110246781 + AluSx SINE Alu 1 312 0 6261 187 63 65 chr12 34035708 34036151 -110246338 + L1MC4a LINE L1 7353 7795 -13 2043 125 7 0 chr12 34036369 34036670 -110245819 + AluSx SINE Alu 1 303 0 237 108 0 0 chr12 34036847 34036884 -110245605 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 464 242 61 61 chr12 34038869 34039034 -110243455 - L2 LINE L2 -1 3312 3148 687 201 134 0 chr12 34039067 34039246 -110243243 + MER3 DNA MER1_type 2 204 -5 217 224 179 0 chr12 34039287 34039354 -110243135 - L2 LINE L2 -247 3066 2988 1915 117 52 36 chr12 34039971 34040279 -110242210 + AluSq SINE Alu 1 313 0 870 211 119 18 chr12 34040582 34040809 -110241680 + MIR SINE MIR 13 262 0 370 257 93 84 chr12 34040809 34041064 -110241425 + MIR SINE MIR 16 251 -11 400 273 15 0 chr12 34042283 34042415 -110240074 - L1ME LINE L1 -344 5818 5685 239 259 37 46 chr12 34042427 34042461 -110240028 - MER5C DNA MER1_type -1 323 290 2270 117 0 0 chr12 34042461 34042768 -110239721 - AluSx SINE Alu -5 307 1 239 259 37 46 chr12 34042768 34042841 -110239648 - MER5C DNA MER1_type -34 290 217 1753 184 42 84 chr12 34042845 34043368 -110239121 + L1ME1 LINE L1 5601 6101 -65 412 206 50 50 chr12 34043292 34043433 -110239056 + L1MA10 LINE L1 6185 6325 -9 * 301 243 97 97 chr12 34043439 34043665 -110238824 - MER5C DNA MER1_type -97 227 2 490 266 21 75 chr12 34043697 34043800 -110238689 - MER5B DNA MER1_type 0 178 88 2345 201 58 30 chr12 34043800 34044366 -110238123 - MER119 DNA MER1_type -1 582 1 490 266 21 75 chr12 34044366 34044450 -110238039 - MER5B DNA MER1_type -90 88 1 647 261 31 38 chr12 34044514 34044724 -110237765 - L1ME LINE L1 -588 5576 5367 1992 149 10 3 chr12 34044724 34045025 -110237464 - AluJb SINE Alu -9 303 1 647 261 31 38 chr12 34045025 34045075 -110237414 - L1ME LINE L1 -797 5367 5318 1850 148 129 38 chr12 34045241 34045660 -110236829 - LTR32 LTR ERVL 0 471 15 461 278 66 31 chr12 34045660 34045980 -110236509 - L1ME LINE L1 -907 5239 4909 1994 160 0 0 chr12 34046181 34046493 -110235996 + AluJb SINE Alu 1 312 0 539 208 119 86 chr12 34048958 34049016 -110233473 + MLT1J LTR MaLR 231 286 -225 5458 46 6 1 chr12 34049016 34049673 -110232816 + PABL_A LTR ERV1 1 660 0 539 208 119 86 chr12 34049673 34049883 -110232606 + MLT1J LTR MaLR 286 508 -3 216 111 0 0 chr12 34050738 34050774 -110231715 + (TA)n Simple_repeat Simple_repeat 2 37 0 2335 91 3 0 chr12 34050870 34051167 -110231322 - AluSp SINE Alu -14 299 2 2128 117 41 0 chr12 34051783 34052074 -110230415 + AluSx SINE Alu 1 303 -9 9160 159 26 58 chr12 34052164 34053982 -110228507 - L1MA9 LINE L1 -14 6534 4660 713 144 59 0 chr12 34053982 34054100 -110228389 - FRAM SINE Alu -11 165 41 9160 159 26 58 chr12 34054100 34054166 -110228323 - L1MA9 LINE L1 -1888 4660 4593 2196 88 3 3 chr12 34054166 34054492 -110227997 - AluSp SINE Alu 0 326 1 9160 159 26 58 chr12 34054492 34055562 -110226927 - L1MA9 LINE L1 -1955 4593 3543 4566 124 28 7 chr12 34055563 34056310 -110226179 - Tigger1 DNA MER2_type 0 2418 1656 3786 139 40 53 chr12 34056307 34056637 -110225852 - Tigger1 DNA MER2_type -1464 954 621 * 2206 102 7 16 chr12 34056637 34056942 -110225547 - AluSc SINE Alu -7 302 1 3786 139 40 53 chr12 34056942 34057386 -110225103 - Tigger1 DNA MER2_type -1797 621 190 351 78 116 0 chr12 34057391 34057520 -110224969 + (TA)n Simple_repeat Simple_repeat 2 145 0 1140 113 41 10 chr12 34057520 34057714 -110224775 - Tigger1 DNA MER2_type -2218 200 1 3936 236 52 24 chr12 34057714 34059094 -110223395 - L1MA9 LINE L1 -2839 3543 2106 2382 87 0 0 chr12 34059094 34059393 -110223096 + AluSx SINE Alu 2 300 -12 3936 236 52 24 chr12 34059393 34059530 -110222959 - L1MA9 LINE L1 -4276 2106 1974 207 271 0 0 chr12 34059671 34059719 -110222770 + GA-rich Low_complexity Low_complexity 6 53 0 29 28 0 0 chr12 34060004 34060040 -110222449 + AT_rich Low_complexity Low_complexity 1 36 0 1663 89 0 9 chr12 34060145 34060359 -110222130 + AluSg/x SINE Alu 84 295 -17 2245 102 3 0 chr12 34060854 34061147 -110221342 + AluSx SINE Alu 1 294 -18 286 132 0 0 chr12 34061161 34061214 -110221275 + Alu SINE Alu 247 299 -2 710 192 96 6 chr12 34061219 34061386 -110221103 - L1PA16 LINE L1 -22 6144 5963 2401 91 0 0 chr12 34061393 34061700 -110220789 - AluSg SINE Alu -3 307 1 267 178 4 110 chr12 34061852 34061959 -110220530 - MER110A LTR ERV1 -309 167 80 557 322 0 23 chr12 34062013 34062190 -110220299 - MIR3 SINE MIR -33 175 3 228 105 53 0 chr12 34062674 34062712 -110219777 + MER3 DNA MER1_type 47 86 -123 * 442 133 60 0 chr12 34062680 34062763 -110219726 - MER3 DNA MER1_type -7 202 115 319 325 30 6 chr12 34063091 34063260 -110219229 - MLT1J2 LTR MaLR -276 174 2 913 291 51 10 chr12 34063456 34063752 -110218737 + MLT1I LTR MaLR 100 407 -2 2398 69 3 0 chr12 34064507 34064797 -110217692 + AluSg SINE Alu 1 291 -19 2166 163 68 5 chr12 34065006 34065430 -110217059 - LTR32 LTR ERVL -6 465 15 282 123 0 70 chr12 34065431 34065488 -110217001 - LTR32 LTR ERVL -404 67 15 2259 83 30 7 chr12 34065527 34065827 -110216662 + AluSg SINE Alu 1 307 -3 1738 163 12 38 chr12 34065892 34066212 -110216277 + AluJo SINE Alu 1 312 0 2266 128 0 0 chr12 34066509 34066821 -110215668 + AluSx SINE Alu 1 312 0 2191 102 0 0 chr12 34067659 34067954 -110214535 - AluSx SINE Alu -17 295 1 500 249 109 36 chr12 34068064 34068257 -110214232 + HAL1 LINE L1 2 208 -2299 2142 130 7 0 chr12 34069083 34069383 -110213106 - AluSq SINE Alu -11 302 1 310 157 20 0 chr12 34071280 34071382 -110211107 + (TA)n Simple_repeat Simple_repeat 1 104 0 2221 111 0 0 chr12 34071762 34072059 -110210430 - AluSx SINE Alu -15 297 1 2286 185 29 32 chr12 34072122 34072678 -110209811 + L1ME2 LINE L1 5602 6155 -9 2617 217 27 22 chr12 34072732 34073401 -110209088 + L1MB7 LINE L1 5513 6184 0 2122 126 0 3 chr12 34073474 34073775 -110208714 + AluSx SINE Alu 1 300 -12 240 296 74 25 chr12 34073892 34073973 -110208516 - L2 LINE L2 -52 3220 3136 1072 168 0 0 chr12 34074569 34074736 -110207753 - FRAM SINE Alu -10 166 1 2074 92 13 16 chr12 34075742 34076046 -110206443 + AluSx SINE Alu 1 303 -9 414 261 99 0 chr12 34076256 34076367 -110206122 + L2 LINE L2 3191 3312 -1 306 0 0 0 chr12 34077101 34077135 -110205354 + (TG)n Simple_repeat Simple_repeat 2 35 0 2082 135 0 0 chr12 34077136 34077424 -110205065 - AluSx SINE Alu -24 288 1 23 33 0 0 chr12 34077427 34077457 -110205032 + AT_rich Low_complexity Low_complexity 1 30 0 443 277 161 28 chr12 34077694 34077943 -110204546 - MLT1I LTR MaLR -62 347 66 257 181 0 111 chr12 34078131 34078158 -110204331 + MIR3 SINE MIR 133 161 -47 743 166 251 0 chr12 34078158 34078333 -110204156 - MER20 DNA MER1_type 0 219 1 257 181 0 111 chr12 34078333 34078377 -110204112 + MIR3 SINE MIR 161 196 -12 938 93 0 47 chr12 34079180 34079309 -110203180 + FLAM_C SINE Alu 1 123 -10 1026 90 0 8 chr12 34079497 34079631 -110202858 + FLAM_C SINE Alu 1 133 0 2113 97 31 3 chr12 34080094 34080384 -110202105 - AluSq SINE Alu -15 298 1 693 280 43 27 chr12 34080965 34081034 -110201455 - MIR SINE MIR -1 261 195 231 36 0 0 chr12 34081034 34081062 -110201427 + (CA)n Simple_repeat Simple_repeat 2 29 0 693 280 43 27 chr12 34081062 34081249 -110201240 - MIR SINE MIR -67 195 1 2263 109 0 7 chr12 34081314 34081616 -110200873 + AluSx SINE Alu 1 300 -12 298 247 14 0 chr12 34082047 34082120 -110200369 - L1ME4a LINE L1 -94 6027 5954 355 276 80 25 chr12 34082120 34082283 -110200206 - MIR SINE MIR -5 257 86 1067 154 36 72 chr12 34082474 34082634 -110199855 - MER20 DNA MER1_type 0 219 67 2127 115 0 0 chr12 34082634 34082979 -110199510 + AluSx SINE Alu 1 345 0 1067 154 36 72 chr12 34082979 34083038 -110199451 - MER20 DNA MER1_type -152 67 7 1252 102 6 0 chr12 34083386 34083552 -110198937 - AluSc SINE Alu -12 297 131 189 0 0 0 chr12 34083552 34083573 -110198916 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2390 36 0 4 chr12 34083573 34083853 -110198636 - AluY SINE Alu -32 279 1 653 170 0 0 chr12 34085018 34085118 -110197371 + AluJb SINE Alu 207 306 -6 524 221 41 0 chr12 34085440 34085562 -110196927 + L1ME4a LINE L1 5786 5912 -209 350 232 116 36 chr12 34085588 34085726 -110196763 + L1ME4a LINE L1 5967 6115 -6 1861 157 0 13 chr12 34086086 34086385 -110196104 - AluJo SINE Alu -17 295 1 21 0 0 0 chr12 34086387 34086408 -110196081 + AT_rich Low_complexity Low_complexity 1 21 0 367 268 58 16 chr12 34086462 34086635 -110195854 - MIR SINE MIR -1 261 81 346 333 23 38 chr12 34087232 34087364 -110195125 - L2 LINE L2 -6 3266 3137 404 280 72 53 chr12 34088935 34089142 -110193347 - MIR SINE MIR -2 260 50 206 269 26 39 chr12 34089145 34089223 -110193266 - MIR SINE MIR -154 108 32 2255 100 3 0 chr12 34089915 34090206 -110192283 + AluSx SINE Alu 1 292 -20 354 266 65 57 chr12 34090255 34090379 -110192110 - L2 LINE L2 -3 3269 3145 248 267 107 0 chr12 34090579 34090654 -110191835 - MIR SINE MIR 0 262 180 356 149 11 42 chr12 34090667 34090738 -110191751 - AluJb SINE Alu -167 135 68 360 61 36 0 chr12 34090740 34090800 -110191689 + Alu SINE Alu 1 51 -251 669 261 37 58 chr12 34091417 34091584 -110190905 + Charlie8 DNA MER1_type 1 166 -175 2333 71 0 0 chr12 34091584 34091894 -110190595 + AluY SINE Alu 1 310 0 669 261 37 58 chr12 34091894 34091964 -110190525 + Charlie8 DNA MER1_type 166 236 -105 1794 171 7 10 chr12 34091972 34092277 -110190212 - AluJb SINE Alu -8 304 1 2301 97 0 23 chr12 34092819 34093127 -110189362 + AluY SINE Alu 1 301 -10 237 108 0 0 chr12 34093305 34093342 -110189147 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 456 242 61 61 chr12 34095327 34095492 -110186997 - L2 LINE L2 -1 3312 3148 772 201 134 0 chr12 34095525 34095704 -110186785 + MER3 DNA MER1_type 2 204 -5 223 224 179 0 chr12 34095745 34095812 -110186677 - L2 LINE L2 -247 3066 2988 1905 117 52 36 chr12 34096429 34096737 -110185752 + AluSq SINE Alu 1 313 0 877 207 119 18 chr12 34097040 34097267 -110185222 + MIR SINE MIR 13 262 0 346 251 111 85 chr12 34097323 34097522 -110184967 + MIR SINE MIR 48 251 -11 442 250 28 123 chr12 34098592 34098876 -110183613 - L1ME3A LINE L1 -229 5941 5685 2070 115 0 0 chr12 34098922 34099200 -110183289 - AluSx SINE Alu -5 307 30 245 143 48 0 chr12 34099746 34099788 -110182701 + MER3 DNA MER1_type 47 90 -119 * 484 175 62 0 chr12 34099752 34099849 -110182640 - MER3 DNA MER1_type -7 202 100 236 211 90 44 chr12 34099971 34100091 -110182398 - MLT1I LTR MaLR -7 422 318 372 323 42 6 chr12 34100163 34100330 -110182159 - MLT1J2 LTR MaLR -276 174 2 1023 291 51 10 chr12 34100526 34100822 -110181667 + MLT1I LTR MaLR 100 407 -2 2412 69 3 0 chr12 34101577 34101867 -110180622 + AluSg SINE Alu 1 291 -19 2353 163 68 5 chr12 34102076 34102500 -110179989 - LTR32 LTR ERVL -6 465 15 309 123 0 70 chr12 34102501 34102558 -110179931 - LTR32 LTR ERVL -404 67 15 2217 87 30 7 chr12 34102597 34102896 -110179593 + AluSg SINE Alu 1 306 -4 1735 159 12 38 chr12 34102961 34103281 -110179208 + AluJo SINE Alu 1 312 0 2179 119 0 0 chr12 34103577 34103871 -110178618 + AluSq SINE Alu 1 294 -19 298 271 42 80 chr12 34103912 34104174 -110178315 + LTR16B LTR ERVL 207 458 -6 2060 128 0 10 chr12 34104581 34104877 -110177612 - AluSx SINE Alu -19 293 1 669 156 14 92 chr12 34104878 34105019 -110177470 - FLAM_A SINE Alu 0 133 4 207 0 0 0 chr12 34105254 34105277 -110177212 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 376 269 0 28 chr12 34105746 34105854 -110176635 - LTR67 LTR ERVL -22 535 431 1836 159 0 3 chr12 34106019 34106309 -110176180 - AluJb SINE Alu -12 300 12 371 71 0 18 chr12 34106314 34106370 -110176119 + (TTCTCC)n Simple_repeat Simple_repeat 3 57 0 875 126 47 0 chr12 34106396 34106523 -110175966 - AluJb SINE Alu -179 133 1 364 190 51 13 chr12 34106525 34106604 -110175885 + MLT1L LTR MaLR 526 607 -8 1645 159 52 4 chr12 34106796 34106942 -110175547 - AluJo SINE Alu -28 284 146 279 0 0 0 chr12 34106942 34106973 -110175516 + (TG)n Simple_repeat Simple_repeat 2 32 0 1645 159 52 4 chr12 34106973 34107097 -110175392 - AluJo SINE Alu -166 146 1 262 278 8 30 chr12 34107147 34107280 -110175209 + L1MC4 LINE L1 7689 7818 -224 402 291 89 19 chr12 34107281 34107439 -110175050 - MER67C LTR ERV1 -541 169 1 265 286 42 17 chr12 34107471 34107590 -110174899 + L1MC4 LINE L1 7921 8042 0 592 228 13 80 chr12 34107599 34107823 -110174666 - LTR37B LTR ERV1 -3 465 257 1645 169 10 29 chr12 34107848 34108210 -110174279 + AluJb SINE Alu 3 358 0 2116 117 0 0 chr12 34108280 34108563 -110173926 + AluSx SINE Alu 1 283 -29 232 180 60 0 chr12 34108590 34108640 -110173849 - LTR37B LTR ERV1 -278 190 138 1226 182 88 25 chr12 34108642 34108946 -110173543 + Charlie1b DNA MER1_type 8 334 -2427 2228 106 0 0 chr12 34108946 34109239 -110173250 + AluSq SINE Alu 1 293 -20 1226 182 88 25 chr12 34109239 34109253 -110173236 + Charlie1b DNA MER1_type 334 346 -177 294 95 0 0 chr12 34109253 34109295 -110173194 + (TA)n Simple_repeat Simple_repeat 1 42 0 1797 154 58 0 chr12 34109307 34109599 -110172890 + AluSx SINE Alu 3 311 -1 243 172 17 35 chr12 34109678 34109736 -110172753 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 523 0 30 0 chr12 34109739 34109806 -110172683 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 1530 257 62 45 chr12 34110092 34110353 -110172136 + MER20B DNA MER1_type 1 256 -527 2580 65 0 0 chr12 34110353 34110660 -110171829 - AluSg1 SINE Alu -2 307 1 1530 257 62 45 chr12 34110660 34110897 -110171592 + MER20B DNA MER1_type 256 513 -270 5754 74 22 24 chr12 34110897 34110929 -110171560 - MER4E LTR ERV1 0 766 735 2466 58 3 0 chr12 34110929 34111221 -110171268 - AluY SINE Alu -18 293 1 5754 74 22 24 chr12 34111221 34111955 -110170534 - MER4E LTR ERV1 -31 735 1 1530 257 62 45 chr12 34111955 34112015 -110170474 + MER20B DNA MER1_type 513 570 -213 1002 179 131 84 chr12 34112031 34112178 -110170311 + MER2 DNA MER2_type 1 140 -205 2295 48 39 32 chr12 34112178 34112487 -110170002 + AluY SINE Alu 1 311 0 1435 101 101 0 chr12 34112489 34112698 -110169791 - MER30 DNA MER1_type 0 230 1 1002 179 131 84 chr12 34112698 34112844 -110169645 + MER2 DNA MER2_type 140 311 -34 30 0 0 0 chr12 34112859 34112889 -110169600 + AT_rich Low_complexity Low_complexity 1 30 0 2386 97 0 0 chr12 34113026 34113325 -110169164 + AluSx SINE Alu 1 299 -13 5236 112 17 50 chr12 34113374 34113695 -110168794 - MER4E LTR ERV1 0 779 449 2133 126 3 3 chr12 34113695 34114005 -110168484 + AluSg SINE Alu 1 310 0 5236 112 17 50 chr12 34114005 34114488 -110168001 - MER4E LTR ERV1 -330 449 1 1063 121 0 0 chr12 34114573 34114722 -110167767 - AluSg/x SINE Alu -1 309 161 316 265 198 43 chr12 34114950 34115274 -110167215 + L1M4 LINE L1 4579 4952 -1194 1064 168 0 0 chr12 34115293 34115460 -110167029 - FRAM SINE Alu -10 166 1 2074 92 13 16 chr12 34116466 34116770 -110165719 + AluSx SINE Alu 1 303 -9 414 261 99 0 chr12 34116980 34117091 -110165398 + L2 LINE L2 3191 3312 -1 450 0 0 0 chr12 34117825 34117875 -110164614 + (TG)n Simple_repeat Simple_repeat 2 51 0 2082 135 0 0 chr12 34117876 34118164 -110164325 - AluSx SINE Alu -24 288 1 23 33 0 0 chr12 34118167 34118197 -110164292 + AT_rich Low_complexity Low_complexity 1 30 0 443 277 161 28 chr12 34118434 34118683 -110163806 - MLT1I LTR MaLR -62 347 66 257 181 0 111 chr12 34118871 34118898 -110163591 + MIR3 SINE MIR 133 161 -47 743 166 251 0 chr12 34118898 34119073 -110163416 - MER20 DNA MER1_type 0 219 1 257 181 0 111 chr12 34119073 34119117 -110163372 + MIR3 SINE MIR 161 196 -12 938 93 0 47 chr12 34119920 34120049 -110162440 + FLAM_C SINE Alu 1 123 -10 1026 90 0 8 chr12 34120237 34120371 -110162118 + FLAM_C SINE Alu 1 133 0 2113 97 31 3 chr12 34120834 34121124 -110161365 - AluSq SINE Alu -15 298 1 693 280 43 27 chr12 34121705 34121774 -110160715 - MIR SINE MIR -1 261 195 270 0 0 0 chr12 34121774 34121804 -110160685 + (CA)n Simple_repeat Simple_repeat 2 31 0 693 280 43 27 chr12 34121804 34121991 -110160498 - MIR SINE MIR -67 195 1 2263 109 0 7 chr12 34122056 34122358 -110160131 + AluSx SINE Alu 1 300 -12 298 247 14 0 chr12 34122789 34122862 -110159627 - L1ME4a LINE L1 -94 6027 5954 355 276 80 25 chr12 34122862 34123025 -110159464 - MIR SINE MIR -5 257 86 1067 154 36 72 chr12 34123216 34123376 -110159113 - MER20 DNA MER1_type 0 219 67 2127 115 0 0 chr12 34123376 34123706 -110158783 + AluSx SINE Alu 1 330 0 1067 154 36 72 chr12 34123706 34123765 -110158724 - MER20 DNA MER1_type -152 67 7 1252 102 6 0 chr12 34124111 34124277 -110158212 - AluSc SINE Alu -12 297 131 189 0 0 0 chr12 34124277 34124298 -110158191 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2321 68 0 0 chr12 34124298 34124577 -110157912 - AluY SINE Alu -32 279 1 518 271 42 30 chr12 34124578 34124744 -110157745 - Charlie8 DNA MER1_type -2249 168 1 1748 166 6 32 chr12 34125319 34125633 -110156856 - AluJb SINE Alu -6 306 1 530 307 74 5 chr12 34125792 34126007 -110156482 + MLT1J LTR MaLR 6 235 -276 303 241 18 71 chr12 34126067 34126179 -110156310 + MLT1J LTR MaLR 328 433 -78 1582 166 76 0 chr12 34126184 34126461 -110156028 + AluJo SINE Alu 1 298 -14 1329 261 131 35 chr12 34126461 34126705 -110155784 - L2 LINE L2 -985 2329 2110 2033 105 10 49 chr12 34126705 34127011 -110155478 + AluSx SINE Alu 1 294 -18 2317 88 7 0 chr12 34127011 34127319 -110155170 + AluSx SINE Alu 1 312 0 1329 261 131 35 chr12 34127319 34127762 -110154727 - L2 LINE L2 -1203 2111 1575 3178 96 96 2 chr12 34127880 34128337 -110154152 - MER61D LTR ERV1 -1 500 1 1965 108 8 0 chr12 34128788 34129048 -110153441 + AluSc SINE Alu 26 287 -22 2976 89 13 17 chr12 34129048 34129519 -110152970 + MER4A LTR ERV1 128 664 0 1375 174 28 68 chr12 34129561 34129665 -110152824 + MER67C LTR ERV1 52 159 -551 2080 107 4 4 chr12 34129665 34129972 -110152517 - AluSg SINE Alu 0 307 1 1375 174 28 68 chr12 34129972 34130097 -110152392 + MER67C LTR ERV1 159 268 -442 4166 99 21 44 chr12 34130097 34130684 -110151805 - LTR9B LTR ERV1 0 644 72 2388 50 0 77 chr12 34130684 34131021 -110151468 + AluY SINE Alu 1 311 0 4166 99 21 44 chr12 34131021 34131092 -110151397 - LTR9B LTR ERV1 -572 72 1 1375 174 28 68 chr12 34131092 34131182 -110151307 + MER67C LTR ERV1 268 360 -350 1838 173 10 19 chr12 34131182 34131495 -110150994 + AluJo SINE Alu 1 310 -2 225 65 0 0 chr12 34131523 34131554 -110150935 + MER67C LTR ERV1 342 372 -338 3283 146 0 4 chr12 34131563 34132076 -110150413 + MER41B LTR ERV1 1 511 -124 1938 153 10 3 chr12 34132081 34132389 -110150100 - AluSx SINE Alu -1 311 2 218 245 137 20 chr12 34132555 34132657 -110149832 - L2 LINE L2 -3 3310 3197 2367 86 3 0 chr12 34132734 34133036 -110149453 + AluSx SINE Alu 1 303 -9 976 51 8 0 chr12 34133876 34134021 -110148468 + AluSg/x SINE Alu 167 312 0 2226 96 7 3 chr12 34134628 34134929 -110147560 + AluSc SINE Alu 1 302 -7 222 62 0 0 chr12 34135102 34135134 -110147355 + (CA)n Simple_repeat Simple_repeat 1 32 0 182 224 0 13 chr12 34135608 34135652 -110146837 + (TA)n Simple_repeat Simple_repeat 2 46 -30 1737 180 8 37 chr12 34135652 34136029 -110146460 - MER47A DNA MER2_type 0 366 1 182 224 0 13 chr12 34136029 34136060 -110146429 + (TA)n Simple_repeat Simple_repeat 46 76 0 274 366 139 28 chr12 34136158 34136374 -110146115 + MIR SINE MIR 23 262 0 2242 112 0 3 chr12 34136389 34136684 -110145805 + AluSx SINE Alu 1 294 -18 2046 149 0 0 chr12 34137099 34137401 -110145088 + AluSx SINE Alu 1 302 -10 1676 183 7 7 chr12 34138801 34139096 -110143393 + AluJb SINE Alu 14 308 -4 2147 124 3 0 chr12 34139096 34139393 -110143096 + AluSx SINE Alu 1 299 -13 376 130 39 0 chr12 34139393 34139470 -110143019 + G-rich Low_complexity Low_complexity 3 82 0 265 313 120 31 chr12 34139474 34139666 -110142823 - Charlie8 DNA MER1_type -2197 220 1 334 312 21 48 chr12 34139864 34140050 -110142439 - L3 LINE CR1 -72 1505 1325 2411 80 0 0 chr12 34140412 34140711 -110141778 + AluY SINE Alu 1 299 -12 2262 115 0 0 chr12 34140991 34141287 -110141202 - AluSx SINE Alu -16 296 1 735 241 141 11 chr12 34141443 34141713 -110140776 + L2 LINE L2 2423 2727 -587 2407 91 0 0 chr12 34142060 34142358 -110140131 - AluSg SINE Alu -12 298 1 574 283 74 82 chr12 34142358 34142750 -110139739 + L2 LINE L2 2922 3310 -3 23 0 0 0 chr12 34143208 34143231 -110139258 + AT_rich Low_complexity Low_complexity 1 23 0 2130 118 10 0 chr12 34143359 34143648 -110138841 + AluSx SINE Alu 1 292 -20 2282 57 46 0 chr12 34144003 34144285 -110138204 + AluY SINE Alu 1 295 -16 2012 130 27 0 chr12 34144823 34145116 -110137373 + AluSx SINE Alu 1 301 -11 925 233 0 0 chr12 34145116 34145292 -110137197 + AluJb SINE Alu 134 309 -3 2299 109 0 0 chr12 34145850 34146152 -110136337 + AluSx SINE Alu 1 302 -10 1080 268 45 53 chr12 34146431 34147187 -110135302 + L1MC/D LINE L1 4698 5437 -743 21 36 0 0 chr12 34147242 34147270 -110135219 + AT_rich Low_complexity Low_complexity 1 28 0 2220 120 0 17 chr12 34147280 34147581 -110134908 - AluSx SINE Alu -16 296 1 1917 151 3 20 chr12 34147989 34148294 -110134195 - AluJb SINE Alu -12 300 1 215 300 22 22 chr12 34148485 34148575 -110133914 + L2 LINE L2 2684 2773 -541 194 291 114 39 chr12 34149193 34149447 -110133042 + L2 LINE L2 2811 3083 -189 209 33 33 0 chr12 34149467 34149497 -110132992 + (TTA)n Simple_repeat Simple_repeat 2 32 0 409 274 149 19 chr12 34149510 34149718 -110132771 - MIR SINE MIR -8 254 20 196 288 17 0 chr12 34149812 34149871 -110132618 + L2 LINE L2 3213 3272 0 2306 84 3 3 chr12 34150162 34150461 -110132028 - AluSx SINE Alu -13 299 1 658 197 87 16 chr12 34150669 34150852 -110131637 + L2 LINE L2 2709 2904 -410 454 300 17 43 chr12 34150848 34151081 -110131408 + L2 LINE L2 3032 3258 -55 * 2264 60 0 122 chr12 34151537 34151889 -110130600 - AluY SINE Alu -2 309 1 2080 135 0 3 chr12 34151938 34152241 -110130248 + AluSx SINE Alu 1 302 -10 205 243 0 0 chr12 34152297 34152334 -110130155 + polypyrimidine Low_complexity Low_complexity 2 38 0 1952 144 4 0 chr12 34153311 34153614 -110128875 - AluSx SINE Alu 0 306 3 339 287 90 36 chr12 34153684 34153851 -110128638 - MER5B DNA MER1_type -1 177 2 652 258 184 12 chr12 34154060 34154386 -110128103 + L2 LINE L2 2932 3313 0 1996 146 30 9 chr12 34154456 34154792 -110127697 + MER2 DNA MER2_type 1 343 -1 2316 64 4 4 chr12 34154825 34155165 -110127324 + AluY SINE Alu 1 340 0 2277 92 7 0 chr12 34155177 34155469 -110127020 + AluSp SINE Alu 1 294 -19 375 169 0 0 chr12 34155469 34155540 -110126949 + (TA)n Simple_repeat Simple_repeat 2 72 0 610 268 79 30 chr12 34155933 34156198 -110126291 - L3 LINE CR1 -3 1574 1297 893 176 0 34 chr12 34156342 34156490 -110125999 + AluJ SINE Alu 1 143 -169 969 184 25 0 chr12 34156523 34156686 -110125803 + AluJ SINE Alu 120 286 -26 300 119 0 0 chr12 34156708 34156767 -110125722 + (GA)n Simple_repeat Simple_repeat 2 60 0 207 170 0 0 chr12 34157774 34157821 -110124668 + A-rich Low_complexity Low_complexity 1 47 0 803 135 0 0 chr12 34158045 34158156 -110124333 + FLAM_C SINE Alu 1 111 -32 23 0 0 0 chr12 34158507 34158530 -110123959 + AT_rich Low_complexity Low_complexity 1 23 0 1724 155 11 18 chr12 34158538 34158822 -110123667 + AluJb SINE Alu 21 302 -10 1840 168 0 16 chr12 34158894 34159031 -110123458 + AluSx SINE Alu 1 139 -173 2186 102 7 10 chr12 34159031 34159325 -110123164 + AluSg SINE Alu 1 293 -17 1840 168 0 16 chr12 34159325 34159490 -110122999 + AluSx SINE Alu 139 298 -14 1160 178 28 112 chr12 34159494 34159815 -110122674 + AluJb SINE Alu 3 296 -6 291 259 64 43 chr12 34160152 34160341 -110122148 + MIR SINE MIR 50 241 -21 2359 102 3 0 chr12 34160895 34161199 -110121290 + AluSp SINE Alu 1 305 -8 21 89 0 0 chr12 34161312 34161368 -110121121 + AT_rich Low_complexity Low_complexity 1 56 0 1582 102 0 0 chr12 34161369 34161607 -110120882 + AluY SINE Alu 76 313 0 2164 36 0 0 chr12 34162201 34162452 -110120037 - L1PA3 LINE L1 -1 6154 5904 29 28 0 0 chr12 34163650 34163686 -110118803 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 34166483 34166506 -110115983 + GC_rich Low_complexity Low_complexity 1 23 0 374 278 136 0 chr12 34167199 34167361 -110115128 - MIR SINE MIR 0 262 79 234 0 0 0 chr12 34167777 34167803 -110114686 + (A)n Simple_repeat Simple_repeat 1 26 0 1997 128 45 3 chr12 34167813 34168102 -110114387 + AluSx SINE Alu 1 301 -11 1959 163 13 0 chr12 34168880 34169186 -110113303 - AluJo SINE Alu -2 310 1 1527 203 20 7 chr12 34169319 34169614 -110112875 + AluJo SINE Alu 1 299 -13 2374 99 3 6 chr12 34169614 34169927 -110112562 + AluSx SINE Alu 1 312 0 281 230 274 0 chr12 34169934 34170047 -110112442 + MIR SINE MIR 37 180 -82 252 334 53 75 chr12 34170141 34170320 -110112169 - L2 LINE L2 -252 3061 2880 1913 142 3 32 chr12 34170320 34170636 -110111853 + AluJo SINE Alu 2 308 -4 252 334 53 75 chr12 34170636 34170831 -110111658 - L2 LINE L2 -433 2880 2698 852 134 0 16 chr12 34170836 34170963 -110111526 + AluJb SINE Alu 1 125 -187 23 0 0 0 chr12 34170963 34170986 -110111503 + AT_rich Low_complexity Low_complexity 1 23 0 1001 296 89 75 chr12 34171019 34171343 -110111146 - L2 LINE L2 -660 2654 2336 2389 97 0 0 chr12 34171343 34171643 -110110846 - AluSx SINE Alu -12 300 1 1001 296 89 75 chr12 34171643 34172141 -110110348 - L2 LINE L2 -978 2336 1821 2223 115 0 0 chr12 34172154 34172441 -110110048 + AluSx SINE Alu 2 288 -24 8442 51 1 0 chr12 34172736 34173701 -110108788 - LTR5 LTR ERVK -3 966 1 3514 199 30 29 chr12 34173701 34173917 -110108572 - L1MB8 LINE L1 -152 6026 5812 2351 78 0 69 chr12 34173917 34174101 -110108388 - AluSp SINE Alu -3 310 115 315 0 0 0 chr12 34174101 34174136 -110108353 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2387 48 0 21 chr12 34174136 34174426 -110108063 - AluY SINE Alu -27 284 1 2351 78 0 69 chr12 34174426 34174573 -110107916 - AluSp SINE Alu -196 117 1 3514 199 30 29 chr12 34174573 34175212 -110107277 - L1MB8 LINE L1 -366 5812 5175 1889 126 66 0 chr12 34175212 34175498 -110106991 + AluSx SINE Alu 1 305 -7 3514 199 30 29 chr12 34175498 34175879 -110106610 - L1MB8 LINE L1 -1003 5175 4789 1269 194 29 98 chr12 34175879 34176076 -110106413 - MLT1A1 LTR MaLR -2 363 180 216 0 0 0 chr12 34176076 34176100 -110106389 + (A)n Simple_repeat Simple_repeat 1 24 0 1269 194 29 98 chr12 34176100 34176265 -110106224 - MLT1A1 LTR MaLR -185 180 5 3514 199 30 29 chr12 34176265 34176343 -110106146 - L1MB8 LINE L1 -1389 4789 4713 2489 102 4 0 chr12 34176461 34177136 -110105353 + AluSx SINE Alu 1 310 -2 379 324 56 17 chr12 34177287 34177466 -110105023 + MIR SINE MIR 37 222 -40 228 67 0 0 chr12 34177829 34177859 -110104630 + (TG)n Simple_repeat Simple_repeat 1 30 0 507 42 70 0 chr12 34178577 34178648 -110103841 - AluY SINE Alu -22 289 214 308 211 120 38 chr12 34178649 34178782 -110103707 - L1ME4a LINE L1 -177 5944 5801 1517 184 54 4 chr12 34178863 34179141 -110103348 + AluJb SINE Alu 1 292 -20 2570 75 67 20 chr12 34179388 34179746 -110102743 - THE1C LTR MaLR 0 375 1 463 265 30 8 chr12 34180215 34180347 -110102142 + MIR SINE MIR 110 244 -18 2215 60 32 3 chr12 34180579 34180863 -110101626 + AluY SINE Alu 1 292 -19 2007 156 3 13 chr12 34181660 34182003 -110100486 - AluJb SINE Alu 0 312 1 21 0 0 0 chr12 34182008 34182029 -110100460 + AT_rich Low_complexity Low_complexity 1 21 0 1913 161 3 3 chr12 34182312 34182603 -110099886 + AluJb SINE Alu 1 291 -21 468 0 0 0 chr12 34182630 34182682 -110099807 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 365 267 12 0 chr12 34182738 34182824 -110099665 - MIR SINE MIR -105 157 71 413 262 129 6 chr12 34182955 34183110 -110099379 + MIR SINE MIR 20 192 -63 231 330 0 10 chr12 34183258 34183358 -110099131 - MIR SINE MIR -1 261 163 2148 125 3 0 chr12 34184743 34185040 -110097449 - AluSq SINE Alu -15 298 1 453 141 0 0 chr12 34185338 34185402 -110097087 + AluS SINE Alu 3 66 -246 1662 158 14 4 chr12 34185978 34186278 -110096211 + AluJo SINE Alu 1 303 0 2218 116 3 0 chr12 34186331 34186625 -110095864 + AluSg SINE Alu 1 295 -15 2178 121 3 0 chr12 34186625 34186923 -110095566 + AluSx SINE Alu 1 299 -13 2431 88 0 0 chr12 34187113 34187409 -110095080 + AluSx SINE Alu 1 296 -16 2422 76 10 0 chr12 34187414 34187716 -110094773 + AluY SINE Alu 2 306 -5 748 103 0 0 chr12 34187904 34188011 -110094478 + AluY SINE Alu 198 304 -7 1153 95 0 6 chr12 34188060 34188218 -110094271 + LTR17 LTR ERV1 170 326 -454 186 133 0 0 chr12 34188218 34188248 -110094241 + (A)n Simple_repeat Simple_repeat 1 30 0 1608 149 104 7 chr12 34189101 34189370 -110093119 - AluJb SINE Alu -15 297 3 581 184 159 12 chr12 34190627 34190790 -110091699 - MER20 DNA MER1_type 0 219 33 883 105 0 45 chr12 34191650 34191783 -110090706 + FLAM_C SINE Alu 1 127 -6 974 90 0 8 chr12 34191967 34192101 -110090388 + FLAM_C SINE Alu 1 133 0 2135 97 31 3 chr12 34192564 34192854 -110089635 - AluSq SINE Alu -15 298 1 617 271 45 29 chr12 34193435 34193504 -110088985 - MIR SINE MIR -1 261 195 270 0 0 0 chr12 34193504 34193534 -110088955 + (CA)n Simple_repeat Simple_repeat 2 31 0 617 271 45 29 chr12 34193534 34193708 -110088781 - MIR SINE MIR -67 195 14 2283 109 0 7 chr12 34193786 34194088 -110088401 + AluSx SINE Alu 1 300 -12 293 247 14 0 chr12 34194519 34194592 -110087897 - L1ME4a LINE L1 -94 6027 5954 310 276 80 25 chr12 34194592 34194755 -110087734 - MIR SINE MIR -5 257 86 1055 152 36 85 chr12 34194946 34195106 -110087383 - MER20 DNA MER1_type 0 219 53 2143 113 0 0 chr12 34195106 34195388 -110087101 + AluSx SINE Alu 1 282 -30 396 0 0 0 chr12 34195391 34195435 -110087054 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1055 152 36 85 chr12 34195435 34195494 -110086995 - MER20 DNA MER1_type -168 51 7 1259 102 6 0 chr12 34195837 34196003 -110086486 - AluSc SINE Alu -12 297 131 189 0 0 0 chr12 34196003 34196024 -110086465 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2427 36 0 4 chr12 34196024 34196304 -110086185 - AluY SINE Alu -32 279 1 617 170 0 0 chr12 34197469 34197569 -110084920 + AluJb SINE Alu 207 306 -6 512 221 41 0 chr12 34197891 34198013 -110084476 + L1ME4a LINE L1 5786 5912 -209 337 232 116 36 chr12 34198039 34198177 -110084312 + L1ME4a LINE L1 5967 6115 -6 25 40 0 20 chr12 34198505 34198531 -110083958 + AT_rich Low_complexity Low_complexity 1 27 -22 1945 157 0 10 chr12 34198531 34198837 -110083652 - AluJo SINE Alu -9 303 1 25 40 0 20 chr12 34198837 34198860 -110083629 + AT_rich Low_complexity Low_complexity 27 49 0 311 304 54 7 chr12 34198914 34199062 -110083427 - MIR SINE MIR -1 261 107 304 333 23 38 chr12 34199682 34199814 -110082675 - L2 LINE L2 -6 3266 3137 404 267 71 53 chr12 34201385 34201610 -110080879 - MIR SINE MIR -2 260 32 2278 100 3 0 chr12 34202303 34202594 -110079895 + AluSx SINE Alu 1 292 -20 316 266 65 57 chr12 34202643 34202767 -110079722 - L2 LINE L2 -3 3269 3145 231 267 107 0 chr12 34202967 34203042 -110079447 - MIR SINE MIR 0 262 180 655 153 21 90 chr12 34203061 34203128 -110079361 - AluJb SINE Alu -177 135 82 2492 80 0 6 chr12 34203128 34203440 -110079049 + AluSq SINE Alu 1 310 -3 655 153 21 90 chr12 34203440 34203516 -110078973 - AluJb SINE Alu -230 82 2 335 213 40 0 chr12 34203699 34203774 -110078715 + MSTD-int LTR MaLR 1658 1735 0 1123 192 113 73 chr12 34203774 34204155 -110078334 + MSTD LTR MaLR 1 396 0 556 305 0 38 chr12 34204266 34204479 -110078010 + MIR SINE MIR 45 249 -13 26 0 0 0 chr12 34204489 34204515 -110077974 + AT_rich Low_complexity Low_complexity 1 26 0 612 202 0 0 chr12 34204753 34204877 -110077612 + AluSg/x SINE Alu 168 291 -19 510 274 26 63 chr12 34204980 34205170 -110077319 + MER34 LTR ERV1 359 541 -1 498 241 0 0 chr12 34205474 34205582 -110076907 + FLAM_A SINE Alu 15 122 -20 843 246 12 12 chr12 34205738 34205990 -110076499 - AluY SINE Alu -11 300 49 676 200 0 0 chr12 34206124 34206249 -110076240 + AluSp/q SINE Alu 164 288 -25 1730 171 0 17 chr12 34206255 34206554 -110075935 + AluSx SINE Alu 1 294 -18 504 174 0 54 chr12 34206554 34206721 -110075768 + GA-rich Low_complexity Low_complexity 2 159 0 347 243 18 29 chr12 34206737 34207010 -110075479 + GA-rich Low_complexity Low_complexity 1 270 0 823 273 0 38 chr12 34207034 34207323 -110075166 + AluSx SINE Alu 14 291 -21 977 168 119 10 chr12 34207432 34207634 -110074855 + Tigger3(Golem) DNA MER2_type 2804 3027 -2 292 181 12 60 chr12 34207657 34207740 -110074749 - LTR37B LTR ERV1 -246 222 144 389 272 56 16 chr12 34207759 34207884 -110074605 + MER58A DNA MER1_type 14 143 0 2529 164 2 2 chr12 34208047 34208468 -110074021 + LTR3 LTR ERVK 12 432 0 1505 166 11 7 chr12 34208570 34208853 -110073636 + MER41A LTR ERV1 1 284 -270 1175 214 25 4 chr12 34208956 34209194 -110073295 + AluJb SINE Alu 50 292 -20 2354 101 67 20 chr12 34209440 34209798 -110072691 - THE1C LTR MaLR 0 375 1 1070 98 0 0 chr12 34210247 34210390 -110072099 - AluSg/x SINE Alu 0 312 170 26 0 0 0 chr12 34210628 34210654 -110071835 + AT_rich Low_complexity Low_complexity 1 26 0 584 295 0 31 chr12 34210664 34210887 -110071602 - MIR SINE MIR -13 249 35 1020 215 105 68 chr12 34210986 34211368 -110071121 - MSTD LTR MaLR 0 396 1 1270 243 71 6 chr12 34211374 34211740 -110070749 - MSTD-int LTR MaLR -5 1730 1341 1941 126 4 0 chr12 34211840 34212111 -110070378 - AluSx SINE Alu -40 272 1 1528 213 3 7 chr12 34212111 34212410 -110070079 - AluJb SINE Alu 0 312 14 828 120 0 8 chr12 34213024 34213141 -110069348 - AluSq/x SINE Alu -195 118 3 280 192 14 82 chr12 34213145 34213218 -110069271 + AluJo SINE Alu 68 135 -167 231 323 65 57 chr12 34213504 34213628 -110068861 + L2 LINE L2 3145 3269 -3 1862 143 3 7 chr12 34213677 34213970 -110068519 - AluSx SINE Alu -20 292 1 29 28 0 0 chr12 34215270 34215306 -110067183 + AT_rich Low_complexity Low_complexity 1 36 0 1673 136 11 11 chr12 34216115 34216395 -110066094 - AluSc SINE Alu -29 280 1 423 60 0 45 chr12 34217144 34217211 -110065278 - AluJ/FLAM SINE Alu -238 74 11 733 144 0 53 chr12 34217411 34217543 -110064946 - FLAM_C SINE Alu -6 127 3 195 268 0 36 chr12 34218352 34218408 -110064081 - L3 LINE CR1 -12 1565 1512 228 67 0 0 chr12 34219042 34219072 -110063417 + (TG)n Simple_repeat Simple_repeat 1 30 0 507 42 70 0 chr12 34219790 34219861 -110062628 - AluY SINE Alu -22 289 214 1222 241 24 21 chr12 34220701 34220905 -110061584 - MLT1A1 LTR MaLR -73 292 85 2293 146 37 0 chr12 34220905 34221255 -110061234 - THE1B LTR MaLR -1 363 1 1222 241 24 21 chr12 34221255 34221341 -110061148 - MLT1A1 LTR MaLR -280 85 1 260 143 63 32 chr12 34221691 34221754 -110060735 - MER91B DNA MER1_type -125 65 1 299 293 76 58 chr12 34222872 34223097 -110059392 - MIR SINE MIR -2 260 32 34 0 0 0 chr12 34224431 34224465 -110058024 + AT_rich Low_complexity Low_complexity 1 34 0 446 224 93 25 chr12 34225923 34226084 -110056405 - L2 LINE L2 -423 2891 2720 1980 110 3 10 chr12 34226305 34226604 -110055885 + AluSx SINE Alu 1 297 -15 1052 244 7 7 chr12 34227399 34227678 -110054811 - AluSx SINE Alu -14 298 20 1054 236 98 11 chr12 34227688 34227964 -110054525 - AluJo SINE Alu 0 302 3 694 268 37 30 chr12 34228355 34228624 -110053865 - L1PA16 LINE L1 -2 6164 5894 198 0 0 0 chr12 34229134 34229156 -110053333 + (TTATA)n Simple_repeat Simple_repeat 4 25 0 1429 123 0 0 chr12 34229156 34229359 -110053130 - AluY SINE Alu -30 281 79 21 89 0 0 chr12 34229363 34229419 -110053070 + AT_rich Low_complexity Low_complexity 1 56 0 2051 133 3 0 chr12 34229532 34229834 -110052655 - AluSp SINE Alu -8 305 3 1612 188 3 0 chr12 34230229 34230522 -110051967 - AluSx SINE Alu -12 300 7 1370 226 3 10 chr12 34230527 34230828 -110051661 - AluJb SINE Alu 0 312 14 374 278 136 0 chr12 34231919 34232081 -110050408 - MIR SINE MIR 0 262 79 234 0 0 0 chr12 34232497 34232523 -110049966 + (A)n Simple_repeat Simple_repeat 1 26 0 1894 149 45 0 chr12 34232533 34232821 -110049668 + AluSx SINE Alu 1 301 -11 643 223 30 82 chr12 34233469 34233588 -110048901 + AluJb SINE Alu 11 135 -177 1510 177 14 0 chr12 34233588 34233865 -110048624 + AluY SINE Alu 1 281 -30 293 0 0 26 chr12 34233870 34233908 -110048581 + (TATAA)n Simple_repeat Simple_repeat 4 40 0 643 223 30 82 chr12 34233908 34234015 -110048474 + AluJb SINE Alu 139 231 -81 189 0 0 0 chr12 34234098 34234119 -110048370 + (CA)n Simple_repeat Simple_repeat 2 22 0 1680 171 0 0 chr12 34234151 34234431 -110048058 + AluSq SINE Alu 7 286 -27 314 23 23 0 chr12 34234431 34234474 -110048015 + (TA)n Simple_repeat Simple_repeat 2 45 0 1061 230 3 25 chr12 34234477 34234760 -110047729 + AluJb SINE Alu 5 281 -31 505 0 31 0 chr12 34234762 34234827 -110047662 + (TA)n Simple_repeat Simple_repeat 2 68 0 771 228 29 58 chr12 34234869 34235145 -110047344 + LTR29 LTR ERV1 137 404 -218 519 188 55 31 chr12 34235196 34235324 -110047165 + AluSq SINE Alu 23 153 -160 386 323 71 34 chr12 34235435 34235757 -110046732 - L2 LINE L2 -1145 2169 1836 1892 160 0 0 chr12 34235785 34236072 -110046417 + AluSx SINE Alu 2 288 -24 8380 54 1 0 chr12 34236367 34237332 -110045157 - LTR5 LTR ERVK -3 966 1 318 258 0 52 chr12 34237343 34237362 -110045127 - L1MC2 LINE L1 -320 6024 6006 821 203 6 28 chr12 34237362 34237544 -110044945 - L1MB8 LINE L1 -170 6008 5831 1265 109 0 22 chr12 34237555 34237738 -110044751 - AluSp SINE Alu -8 305 127 530 204 28 42 chr12 34237935 34238077 -110044412 - L1MB8 LINE L1 -687 5475 5336 400 204 11 0 chr12 34238081 34238169 -110044320 + AluSg/x SINE Alu 207 295 -14 198 136 0 0 chr12 34238276 34238320 -110044169 + (TA)n Simple_repeat Simple_repeat 1 44 0 2489 80 0 0 chr12 34238938 34239239 -110043250 - AluY SINE Alu -10 301 1 22 0 0 0 chr12 34239463 34239485 -110043004 + AT_rich Low_complexity Low_complexity 1 22 0 1501 151 98 4 chr12 34239542 34239807 -110042682 - MLT1B LTR MaLR -77 313 24 937 171 77 6 chr12 34240147 34240317 -110042172 + THE1B LTR MaLR 182 363 -1 909 224 6 6 chr12 34240341 34240520 -110041969 + MLT1A1 LTR MaLR 115 293 -72 2019 150 0 0 chr12 34241176 34241470 -110041019 - AluSx SINE Alu -17 295 2 1707 194 0 10 chr12 34242053 34242352 -110040137 - AluJb SINE Alu -16 296 1 597 314 36 4 chr12 34242993 34243241 -110039248 + AluJo SINE Alu 14 269 -43 372 222 0 0 chr12 34243345 34243417 -110039072 - AluJ/F(R)AM SINE Alu -97 205 134 945 184 0 0 chr12 34243417 34243575 -110038914 - AluSg/x SINE Alu -21 291 134 1840 168 0 16 chr12 34243575 34243740 -110038749 - AluSx SINE Alu -14 298 139 2186 102 7 10 chr12 34243740 34244034 -110038455 - AluSg SINE Alu -17 293 1 1840 168 0 16 chr12 34244034 34244171 -110038318 - AluSx SINE Alu -173 139 1 1628 166 11 18 chr12 34244243 34244527 -110037962 - AluJb SINE Alu -10 302 21 23 0 0 0 chr12 34244535 34244558 -110037931 + AT_rich Low_complexity Low_complexity 1 23 0 803 135 0 0 chr12 34244909 34245020 -110037469 - FLAM_C SINE Alu -32 111 1 207 170 0 0 chr12 34245244 34245291 -110037198 + T-rich Low_complexity Low_complexity 1 47 0 300 119 0 0 chr12 34246298 34246357 -110036132 + (TC)n Simple_repeat Simple_repeat 2 60 0 969 184 25 0 chr12 34246379 34246542 -110035947 - AluJ SINE Alu -26 286 120 863 182 0 34 chr12 34246575 34246723 -110035766 - AluJ SINE Alu -169 143 1 506 304 78 19 chr12 34246876 34247133 -110035356 + L3 LINE CR1 1303 1574 -3 306 179 0 0 chr12 34247540 34247596 -110034893 - L1MC4 LINE L1 -1339 6703 6648 1679 161 7 3 chr12 34247599 34247891 -110034598 - AluSp SINE Alu -20 293 1 446 0 19 0 chr12 34247903 34247957 -110034532 + (TTATA)n Simple_repeat Simple_repeat 4 58 0 1376 167 4 4 chr12 34247957 34248202 -110034287 - AluY SINE Alu -26 285 41 596 214 0 0 chr12 34248303 34248415 -110034074 + AluJb SINE Alu 198 309 -3 2284 113 0 0 chr12 34248973 34249275 -110033214 + AluSx SINE Alu 1 302 -10 1080 268 45 53 chr12 34249554 34250310 -110032179 + L1MC/D LINE L1 4698 5437 -743 21 36 0 0 chr12 34250365 34250393 -110032096 + AT_rich Low_complexity Low_complexity 1 28 0 2220 120 0 17 chr12 34250403 34250704 -110031785 - AluSx SINE Alu -16 296 1 1854 157 3 20 chr12 34251112 34251417 -110031072 - AluJb SINE Alu -12 300 1 205 213 16 33 chr12 34251622 34251683 -110030806 + L2 LINE L2 2699 2758 -556 2079 134 0 0 chr12 34252680 34252963 -110029526 - AluSx SINE Alu -29 283 1 1368 132 7 162 chr12 34253103 34253511 -110028978 + L1M2 LINE L1 5141 5610 -633 1651 151 74 7 chr12 34253511 34253795 -110028694 + AluSx SINE Alu 1 303 -9 960 253 34 3 chr12 34253795 34254088 -110028401 + AluSx SINE Alu 1 302 0 1368 132 7 162 chr12 34254088 34254103 -110028386 + L1M2 LINE L1 5484 5500 -743 1211 136 60 5 chr12 34304644 34304843 -109977646 - LTR12 LTR ERV1 -126 588 379 309 276 10 0 chr12 34304846 34304944 -109977545 - LTR30 LTR ERV1 -80 642 544 5352 143 168 26 chr12 34304944 34306068 -109976421 - pTR5 LTR ERV1 -413 2025 742 308 206 144 0 chr12 34306073 34306170 -109976319 + L1ME3A LINE L1 5821 5931 -239 650 140 309 6 chr12 34306218 34306396 -109976093 + MER21A LTR ERV1 1 232 -699 1758 170 3 0 chr12 34306720 34307002 -109975487 - AluJo SINE Alu -16 296 14 2496 65 0 0 chr12 34307135 34307443 -109975046 - AluY SINE Alu -3 308 1 2368 67 0 13 chr12 34307567 34307865 -109974624 - AluY SINE Alu -17 294 1 940 173 31 0 chr12 34308120 34308282 -109974207 + L1MB3 LINE L1 6017 6183 0 186 326 11 54 chr12 34308548 34308640 -109973849 - L2 LINE L2 -229 3043 2956 22 0 0 0 chr12 34309534 34309556 -109972933 + AT_rich Low_complexity Low_complexity 1 22 0 1349 95 0 0 chr12 34310428 34310607 -109971882 + AluY SINE Alu 131 309 -2 1585 213 123 103 chr12 34310781 34311065 -109971424 - Charlie7 DNA MER1_type -319 2293 2016 2121 122 0 29 chr12 34311065 34311377 -109971112 - AluSx SINE Alu -9 303 1 1585 213 123 103 chr12 34311377 34311388 -109971101 - Charlie7 DNA MER1_type -596 2016 2007 856 139 0 36 chr12 34311388 34311525 -109970964 - FLAM_C SINE Alu -1 132 1 1585 213 123 103 chr12 34311525 34311890 -109970599 - Charlie7 DNA MER1_type -605 2007 1611 2380 93 0 3 chr12 34311890 34312200 -109970289 - AluSp SINE Alu -4 309 1 1585 213 123 103 chr12 34312200 34312336 -109970153 - Charlie7 DNA MER1_type -1001 1611 1479 1582 114 4 0 chr12 34312535 34312763 -109969726 - AluSp SINE Alu -11 302 74 1933 150 25 0 chr12 34313136 34313422 -109969067 - AluJb SINE Alu -19 293 1 1276 191 65 14 chr12 34314589 34314867 -109967622 + AluJb SINE Alu 1 292 -20 199 385 37 9 chr12 34315606 34315715 -109966774 - L2 LINE L2 -20 3252 3141 823 168 58 7 chr12 34316017 34316154 -109966335 + AluJ SINE Alu 2 145 -167 1202 135 0 0 chr12 34316349 34316519 -109965970 + AluJ SINE Alu 129 298 -14 386 342 87 63 chr12 34317222 34317810 -109964679 + L2 LINE L2 2375 2976 -338 2174 122 0 0 chr12 34318572 34318868 -109963621 - AluSx SINE Alu -16 296 1 326 180 0 0 chr12 34319144 34319194 -109963295 - 5S rRNA rRNA -71 50 1 2182 58 47 14 chr12 34319431 34319709 -109962780 + AluY SINE Alu 1 287 -24 509 323 63 5 chr12 34320180 34320369 -109962120 - L3 LINE CR1 -9 1568 1369 467 274 151 27 chr12 34320660 34320952 -109961537 - L1ME4a LINE L1 -206 5915 5588 230 299 15 0 chr12 34321413 34321480 -109961009 - L1ME4a LINE L1 -599 5585 5518 2232 94 7 7 chr12 34322393 34322690 -109959799 - AluSg SINE Alu -13 297 1 285 283 40 0 chr12 34322690 34322789 -109959700 + L1ME LINE L1 5465 5567 -597 1276 269 162 47 chr12 34322864 34323728 -109958761 - L2 LINE L2 -1 3312 2303 1885 156 3 10 chr12 34324663 34324964 -109957525 + AluSx SINE Alu 1 299 -13 662 226 39 96 chr12 34325050 34325280 -109957209 - MER20 DNA MER1_type -1 218 2 2843 119 28 18 chr12 34325325 34325761 -109956728 - MER83 LTR ERV1 -8 440 1 1708 172 10 113 chr12 34326255 34326662 -109955827 + MLT1A1 LTR MaLR 1 365 0 7460 37 0 147 chr12 34328588 34330235 -109952254 + SVA Other Other 1 1383 -3 2522 82 0 6 chr12 34331263 34331578 -109950911 + AluSq SINE Alu 1 313 0 1387 143 13 26 chr12 34331728 34331959 -109950530 + AluJo SINE Alu 71 298 -14 22 0 0 0 chr12 34332076 34332098 -109950391 + AT_rich Low_complexity Low_complexity 1 22 0 1525 183 17 33 chr12 34332098 34332398 -109950091 + AluJb SINE Alu 1 295 -17 382 193 67 67 chr12 34333184 34333319 -109949170 + MER58C DNA MER1_type 81 215 0 1306 198 37 43 chr12 34334398 34334726 -109947763 - L1MD3 LINE L1 -256 7739 7414 2516 75 3 0 chr12 34335207 34335514 -109946975 - AluSc SINE Alu -1 308 1 1702 213 119 30 chr12 34335562 34336101 -109946388 - L1ME1 LINE L1 -2 6164 5578 1651 126 65 0 chr12 34336288 34336565 -109945924 - MER44D DNA MER2_type 0 609 45 233 227 103 21 chr12 34336630 34336727 -109945762 + MIR SINE MIR 68 172 -90 602 237 41 67 chr12 34337381 34337575 -109944914 + MER5A DNA MER1_type 1 189 0 2338 101 3 0 chr12 34337682 34337990 -109944499 - AluSx SINE Alu -3 309 1 2328 78 51 0 chr12 34341177 34341473 -109941016 - AluY SINE Alu 0 311 1 959 302 89 37 chr12 34341495 34342151 -109940338 + L2 LINE L2 2435 3145 -127 1883 170 6 6 chr12 34342151 34342463 -109940026 - AluSx SINE Alu 0 312 1 959 302 89 37 chr12 34342463 34342599 -109939890 + L2 LINE L2 3145 3272 0 21 0 0 0 chr12 34342658 34342679 -109939810 + AT_rich Low_complexity Low_complexity 1 21 0 2099 130 0 13 chr12 34343037 34343352 -109939137 + AluY SINE Alu 1 311 0 2271 96 3 20 chr12 34343553 34343854 -109938635 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr12 34344244 34344266 -109938223 + AT_rich Low_complexity Low_complexity 1 22 0 2234 103 3 0 chr12 34344819 34345110 -109937379 - AluSp SINE Alu -1 312 21 2187 87 7 0 chr12 34345643 34345929 -109936560 - AluSg SINE Alu -22 288 1 2330 250 85 48 chr12 34347168 34347855 -109934634 - MER21B LTR ERV1 -66 865 40 2408 75 0 3 chr12 34347900 34348192 -109934297 - AluY SINE Alu -20 291 1 1969 128 7 14 chr12 34348409 34348706 -109933783 + AluSx SINE Alu 1 295 -17 1885 146 7 7 chr12 34348714 34349009 -109933480 + AluJb SINE Alu 1 295 -17 821 202 22 34 chr12 34349141 34349319 -109933170 - MER5B DNA MER1_type -2 176 1 189 276 35 0 chr12 34349591 34349649 -109932840 - MIR SINE MIR -150 112 53 1019 204 85 0 chr12 34349698 34349899 -109932590 - MER58A DNA MER1_type -6 218 1 721 147 15 44 chr12 34350489 34350625 -109931864 - FLAM_A SINE Alu 0 133 2 1629 173 0 8 chr12 34351420 34351680 -109930809 + AluJo SINE Alu 1 258 -54 340 236 7 76 chr12 34351750 34351894 -109930595 + MIR SINE MIR 129 262 0 2181 108 7 0 chr12 34351983 34352270 -109930219 - AluSq SINE Alu -24 289 1 347 232 36 54 chr12 34353336 34353448 -109929041 + MER103 DNA DNA 8 117 -49 210 372 58 0 chr12 34354358 34354444 -109928045 + L2 LINE L2 3143 3233 -39 1955 143 7 10 chr12 34354660 34354960 -109927529 + AluJb SINE Alu 9 307 -5 427 278 52 63 chr12 34355622 34355813 -109926676 - MIR SINE MIR -27 235 47 2152 100 0 67 chr12 34356516 34356846 -109925643 - AluSx SINE Alu -4 308 1 2368 65 7 52 chr12 34357049 34357358 -109925131 - AluSp SINE Alu -18 295 1 1377 183 95 4 chr12 34358088 34358350 -109924139 + AluJo SINE Alu 2 287 -25 1769 273 89 27 chr12 34358726 34359753 -109922736 - L2 LINE L2 0 3313 2210 2556 57 3 0 chr12 34359834 34360134 -109922355 - AluY SINE Alu -10 301 1 1350 199 63 22 chr12 34360134 34360405 -109922084 - AluJo SINE Alu -30 282 1 1426 150 156 13 chr12 34360526 34360840 -109921649 - L1MB3 LINE L1 -3 6180 5822 1221 96 0 6 chr12 34360840 34360996 -109921493 + AluSq SINE Alu 2 156 -157 337 143 0 0 chr12 34360999 34361048 -109921441 - Alu SINE Alu -254 49 1 396 119 0 17 chr12 34361048 34361107 -109921382 - L1MB3 LINE L1 -445 5738 5681 2058 144 0 0 chr12 34361117 34361416 -109921073 - AluSx SINE Alu -12 300 2 27 73 0 0 chr12 34361471 34361526 -109920963 + AT_rich Low_complexity Low_complexity 1 55 0 2294 92 0 7 chr12 34362211 34362503 -109919986 - AluSc SINE Alu -19 290 1 1576 142 114 4 chr12 34362728 34363009 -109919480 - AluJb SINE Alu 0 312 1 288 236 22 56 chr12 34363035 34363124 -109919365 + MER2 DNA MER2_type 2 87 -258 1923 169 0 3 chr12 34363394 34363690 -109918799 - AluJb SINE Alu -17 295 1 1617 72 0 0 chr12 34364596 34364791 -109917698 + AluSc SINE Alu 113 307 -2 2027 132 17 0 chr12 34365245 34365533 -109916956 - AluSx SINE Alu -19 293 1 32 26 0 0 chr12 34365546 34365585 -109916904 + AT_rich Low_complexity Low_complexity 1 39 0 2380 97 0 10 chr12 34365862 34366171 -109916318 - AluSg SINE Alu -4 306 1 1023 125 0 7 chr12 34366458 34366610 -109915879 + AluSg/x SINE Alu 146 296 -13 2107 118 13 0 chr12 34366620 34366924 -109915565 + AluSq SINE Alu 1 308 -5 188 276 35 35 chr12 34367013 34367100 -109915389 - MIR SINE MIR 0 262 176 2027 112 25 0 chr12 34367427 34367746 -109914743 - AluSx SINE Alu 0 326 1 1055 130 25 45 chr12 34368152 34368352 -109914137 + MER20 DNA MER1_type 24 219 0 2438 80 0 0 chr12 34368838 34369137 -109913352 - AluSx SINE Alu -13 299 1 2521 72 3 0 chr12 34369926 34370230 -109912259 + AluSg SINE Alu 1 305 -5 227 300 55 45 chr12 34370762 34370872 -109911617 - MIR SINE MIR -129 133 23 2072 97 41 0 chr12 34370930 34371236 -109911253 - AluSc SINE Alu 0 317 1 369 0 0 0 chr12 34371313 34371354 -109911135 + (TA)n Simple_repeat Simple_repeat 2 42 0 1828 183 0 3 chr12 34371354 34371649 -109910840 - AluJo SINE Alu -18 294 1 2307 87 17 0 chr12 34371699 34371998 -109910491 - AluSx SINE Alu -8 304 1 2020 118 47 0 chr12 34372559 34372855 -109909634 - AluSx SINE Alu 0 312 3 2187 112 0 14 chr12 34372858 34373182 -109909307 - AluSq SINE Alu 0 313 1 384 308 5 76 chr12 34373247 34373432 -109909057 + MIR3 SINE MIR 29 200 -8 270 160 0 0 chr12 34373498 34373548 -109908941 + (TG)n Simple_repeat Simple_repeat 2 51 0 232 214 18 0 chr12 34373548 34373604 -109908885 + (TA)n Simple_repeat Simple_repeat 1 57 0 3057 121 111 44 chr12 34373787 34374030 -109908459 - MER51A LTR ERV1 0 634 409 1550 98 61 138 chr12 34374030 34374357 -109908132 + AluSg SINE Alu 1 302 -8 3057 121 111 44 chr12 34374357 34374707 -109907782 - MER51A LTR ERV1 -225 409 1 304 294 61 28 chr12 34374951 34375131 -109907358 + L1MC4a LINE L1 5180 5365 -781 1725 154 29 29 chr12 34375133 34375445 -109907044 + AluJb SINE Alu 1 312 0 2515 53 0 3 chr12 34375589 34375889 -109906600 - AluY SINE Alu -12 299 1 991 279 56 24 chr12 34375906 34376332 -109906157 + L1MC4a LINE L1 5445 5884 -1924 939 152 87 159 chr12 34376526 34376699 -109905790 + MLT1C LTR MaLR 1 185 -282 2581 58 0 10 chr12 34376699 34377010 -109905479 + AluY SINE Alu 1 308 -3 939 152 87 159 chr12 34377010 34377050 -109905439 + MLT1C LTR MaLR 185 226 -241 2127 112 7 7 chr12 34377050 34377335 -109905154 + AluSq SINE Alu 1 285 -28 438 20 0 0 chr12 34377335 34377386 -109905103 + (CA)n Simple_repeat Simple_repeat 2 52 0 939 152 87 159 chr12 34377386 34377517 -109904972 + MLT1C LTR MaLR 224 341 -126 1237 222 135 49 chr12 34377537 34378027 -109904462 - LTR10B LTR ERV1 -3 544 13 785 152 8 8 chr12 34378047 34378179 -109904310 + MLT1C LTR MaLR 336 467 0 1831 136 11 0 chr12 34378226 34378498 -109903991 - AluSx SINE Alu -37 275 1 1973 115 21 11 chr12 34379087 34379214 -109903275 + AluSx SINE Alu 2 126 -186 2276 90 0 34 chr12 34379214 34379536 -109902953 + AluSp SINE Alu 1 311 -2 1973 115 21 11 chr12 34379536 34379695 -109902794 + AluSx SINE Alu 126 291 -21 22 0 0 0 chr12 34379695 34379717 -109902772 + AT_rich Low_complexity Low_complexity 1 22 0 2073 109 46 0 chr12 34380786 34381071 -109901418 + AluSx SINE Alu 2 299 -13 288 237 316 7 chr12 34381097 34381249 -109901240 + MIR SINE MIR 58 256 -6 2467 78 0 0 chr12 34381373 34381668 -109900821 + AluY SINE Alu 1 295 -16 195 42 0 0 chr12 34381668 34381692 -109900797 + (TA)n Simple_repeat Simple_repeat 2 25 0 1828 207 66 28 chr12 34381934 34382334 -109900155 + MLT1D LTR MaLR 19 441 -64 2378 84 0 0 chr12 34382334 34382630 -109899859 - AluY SINE Alu -15 296 1 1828 207 66 28 chr12 34382630 34382698 -109899791 + MLT1D LTR MaLR 441 505 0 2121 120 0 0 chr12 34382919 34383210 -109899279 - AluSx SINE Alu -19 293 3 2307 104 0 0 chr12 34383328 34383637 -109898852 - AluY SINE Alu -2 309 1 2346 74 10 16 chr12 34383835 34384146 -109898343 - AluSq SINE Alu -4 309 1 2522 79 0 0 chr12 34384147 34384451 -109898038 - AluSp SINE Alu -9 304 1 192 233 23 0 chr12 34384714 34384757 -109897732 - L2 LINE L2 0 3313 3270 280 224 52 0 chr12 34384809 34384867 -109897622 - MER91 DNA MER1_type -78 62 2 1712 173 0 40 chr12 34384961 34385284 -109897205 - AluJb SINE Alu 0 312 3 1094 74 7 0 chr12 34385285 34385420 -109897069 - AluSp SINE Alu -177 136 1 2070 107 0 36 chr12 34385557 34385865 -109896624 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr12 34386047 34386070 -109896419 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 710 123 113 0 chr12 34386072 34386178 -109896311 - FLAM_C SINE Alu -15 118 1 207 0 0 0 chr12 34386190 34386213 -109896276 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2259 60 0 0 chr12 34386407 34386713 -109895776 + AluY SINE Alu 15 320 0 192 40 0 0 chr12 34388308 34388333 -109894156 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1212 165 9 24 chr12 34389109 34389321 -109893168 + AluJb SINE Alu 47 255 -57 825 114 78 78 chr12 34389642 34389809 -109892680 + FRAM SINE Alu 1 161 -15 421 285 116 35 chr12 34389890 34389932 -109892557 - MER5A DNA MER1_type 0 189 152 2273 95 3 0 chr12 34389932 34390226 -109892263 - AluSp SINE Alu -18 295 1 421 285 116 35 chr12 34390226 34390355 -109892134 - MER5A DNA MER1_type -37 152 4 216 213 16 49 chr12 34390824 34390885 -109891604 - L3 LINE CR1 -19 1558 1500 1703 151 55 17 chr12 34391021 34391312 -109891177 - AluJo SINE Alu -10 302 1 2346 116 0 0 chr12 34391327 34391637 -109890852 - AluSg SINE Alu 0 310 1 902 137 38 0 chr12 34391637 34391768 -109890721 - AluSq/x SINE Alu -176 136 1 757 191 64 49 chr12 34391805 34392009 -109890480 - L1MB7 LINE L1 -1 6183 5977 2006 148 88 96 chr12 34392148 34392269 -109890220 - L1MB7 LINE L1 -202 5982 5862 1988 117 42 11 chr12 34392269 34392552 -109889937 - AluSx SINE Alu -9 303 12 2006 148 88 96 chr12 34392552 34392736 -109889753 - L1MB7 LINE L1 -322 5862 5678 2397 61 10 0 chr12 34392736 34393030 -109889459 - AluY SINE Alu -14 297 1 2006 148 88 96 chr12 34393030 34393153 -109889336 - L1MB7 LINE L1 -506 5678 5555 2035 129 0 7 chr12 34393153 34393456 -109889033 - AluSx SINE Alu -11 301 1 2006 148 88 96 chr12 34393456 34393538 -109888951 - L1MB7 LINE L1 -629 5555 5474 642 159 88 23 chr12 34393803 34393839 -109888650 - L1MB5 LINE L1 -6 6168 6136 2422 83 13 0 chr12 34393839 34394140 -109888349 - AluSp SINE Alu -8 305 1 642 159 88 23 chr12 34394140 34394691 -109887798 - L1MB5 LINE L1 -38 6136 5372 888 121 0 57 chr12 34394733 34394874 -109887615 - FLAM_C SINE Alu 0 133 1 1920 210 80 68 chr12 34394874 34395238 -109887251 - L1MB5 LINE L1 -941 5205 4847 1919 144 0 23 chr12 34395238 34395543 -109886946 - AluSx SINE Alu -14 298 1 1920 210 80 68 chr12 34395543 34395711 -109886778 - L1MB5 LINE L1 -1299 4847 4660 1818 146 4 4 chr12 34395711 34396011 -109886478 - AluSx SINE Alu 0 307 8 1920 210 80 68 chr12 34396011 34396138 -109886351 - L1MB5 LINE L1 -1486 4660 4536 455 98 37 73 chr12 34396224 34396306 -109886183 - MER41B LTR ERV1 -91 544 466 818 144 53 48 chr12 34396320 34396508 -109885981 - L1M4c LINE L1 -4850 1534 1346 961 194 12 6 chr12 34396710 34396880 -109885609 + FAM SINE Alu 1 171 -4 1980 113 33 0 chr12 34396986 34397281 -109885208 - AluSp SINE Alu 0 305 2 269 0 0 0 chr12 34397378 34397413 -109885076 + L1MD3 LINE L1 7950 7984 -11 793 264 98 62 chr12 34398010 34398366 -109884123 + Charlie8 DNA MER1_type 29 397 -2020 516 276 96 15 chr12 34398369 34398568 -109883921 + MIR SINE MIR 48 262 0 2377 140 44 31 chr12 34398783 34399044 -109883445 - MLT1B LTR MaLR 0 390 121 2337 68 0 20 chr12 34399044 34399336 -109883153 - AluSc SINE Alu -23 286 1 2377 140 44 31 chr12 34399336 34399459 -109883030 - MLT1B LTR MaLR -269 121 1 229 210 99 127 chr12 34399690 34399871 -109882618 + HAL1b LINE L1 309 484 -864 27 0 0 0 chr12 34399939 34399966 -109882523 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr12 34400119 34400142 -109882347 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 592 279 209 21 chr12 34400660 34401173 -109881316 - L1ME3 LINE L1 -300 5862 5254 1522 170 20 98 chr12 34401314 34401427 -109881062 - L1MB8 LINE L1 0 6178 6058 1926 157 0 3 chr12 34401427 34401732 -109880757 - AluJb SINE Alu -8 304 1 1522 170 20 98 chr12 34401732 34401882 -109880607 - L1MB8 LINE L1 -120 6058 5956 2212 95 0 7 chr12 34401882 34402177 -109880312 - AluSg SINE Alu -17 293 1 1522 170 20 98 chr12 34402177 34402318 -109880171 - L1MB8 LINE L1 -222 5956 5805 1857 148 0 7 chr12 34403281 34403564 -109878925 + AluJb SINE Alu 1 281 -31 299 291 33 88 chr12 34403624 34404047 -109878442 + HAL1b LINE L1 8 407 -941 1629 157 6 63 chr12 34404047 34404163 -109878326 + AluJo SINE Alu 1 122 -190 390 21 0 0 chr12 34404163 34404210 -109878279 + (CA)n Simple_repeat Simple_repeat 2 48 0 1629 157 6 63 chr12 34404210 34404412 -109878077 + AluJo SINE Alu 122 301 -11 896 119 30 0 chr12 34404428 34404562 -109877927 - AluSp/q SINE Alu -19 294 157 1837 123 8 4 chr12 34405538 34405799 -109876690 - AluSx SINE Alu -10 302 41 227 154 15 0 chr12 34405977 34406042 -109876447 + (TG)n Simple_repeat Simple_repeat 2 67 0 254 188 72 14 chr12 34406043 34406181 -109876308 + (TTGG)n Simple_repeat Simple_repeat 3 148 0 * 408 169 16 60 chr12 34406086 34406269 -109876220 + (TTTG)n Simple_repeat Simple_repeat 4 178 0 534 197 16 31 chr12 34406378 34406505 -109875984 - AluY SINE Alu -185 126 2 632 131 35 162 chr12 34406723 34406830 -109875659 + L1MB4 LINE L1 5862 5934 -246 1868 128 24 35 chr12 34406830 34407119 -109875370 + AluSq SINE Alu 1 286 -27 632 131 35 162 chr12 34407119 34407209 -109875280 + L1MB4 LINE L1 5934 6034 -146 2251 91 7 3 chr12 34407209 34407495 -109874994 + AluSg SINE Alu 1 287 -23 1980 100 0 36 chr12 34407499 34407780 -109874709 + AluSc SINE Alu 1 271 -38 1919 91 0 0 chr12 34408002 34408243 -109874246 + AluSg/x SINE Alu 69 309 -1 432 290 98 27 chr12 34409973 34410156 -109872333 + LTR33 LTR ERVL 12 207 -314 694 214 31 36 chr12 34410208 34410404 -109872085 + LTR33 LTR ERVL 327 521 0 880 197 25 102 chr12 34410632 34410678 -109871811 + L1MC4 LINE L1 7741 7789 -253 984 155 0 31 chr12 34410678 34410839 -109871650 + FRAM SINE Alu 5 160 -6 880 197 25 102 chr12 34410839 34411138 -109871351 + L1MC4 LINE L1 7789 8042 0 538 318 109 49 chr12 34411182 34411353 -109871136 + L1MC4a LINE L1 5307 5466 -655 1993 96 7 11 chr12 34411353 34411623 -109870866 + AluSx SINE Alu 37 305 -7 538 318 109 49 chr12 34411623 34411930 -109870559 + L1MC4a LINE L1 5466 5706 -415 2207 78 4 0 chr12 34411930 34412198 -109870291 - AluSx SINE Alu -18 294 26 538 318 109 49 chr12 34412198 34412266 -109870223 + L1MC4a LINE L1 5706 5768 -353 1674 177 11 4 chr12 34412269 34412546 -109869943 + AluJb SINE Alu 1 279 -33 2487 61 7 3 chr12 34412798 34413095 -109869394 + AluSp SINE Alu 1 298 -15 694 114 0 19 chr12 34413527 34413632 -109868857 - AluSg/x SINE Alu -9 301 199 235 53 0 0 chr12 34413733 34413771 -109868718 + AluJb SINE Alu 262 299 0 2397 87 0 3 chr12 34414353 34414652 -109867837 + AluSc SINE Alu 1 298 -11 252 89 89 0 chr12 34414652 34414753 -109867736 + (TA)n Simple_repeat Simple_repeat 1 110 0 2132 113 7 0 chr12 34415669 34415961 -109866528 - AluSx SINE Alu -17 295 2 244 273 0 0 chr12 34416492 34416569 -109865920 + CT-rich Low_complexity Low_complexity 1 77 0 410 307 121 29 chr12 34417788 34418068 -109864421 - L1MC/D LINE L1 -2002 5806 5501 885 180 47 73 chr12 34418078 34418311 -109864178 - L1MD2 LINE L1 -15 6344 6118 2545 57 0 0 chr12 34418919 34419217 -109863272 + AluSx SINE Alu 1 298 -14 2193 103 23 10 chr12 34419652 34419953 -109862536 - AluSx SINE Alu -7 305 1 37 0 0 0 chr12 34420020 34420057 -109862432 + AT_rich Low_complexity Low_complexity 1 37 0 741 50 89 0 chr12 34420057 34420158 -109862331 - HY1 scRNA scRNA -2 110 1 23 0 0 0 chr12 34420708 34420731 -109861758 + AT_rich Low_complexity Low_complexity 1 23 0 1805 172 0 13 chr12 34422319 34422633 -109859856 + AluJb SINE Alu 1 310 -2 311 28 0 0 chr12 34422968 34423004 -109859485 - U2 snRNA snRNA -152 36 1 1447 124 4 26 chr12 34425068 34425301 -109857188 + AluJo SINE Alu 85 312 0 31 0 0 0 chr12 34425547 34425578 -109856911 + AT_rich Low_complexity Low_complexity 1 31 0 1951 226 78 115 chr12 34425756 34426268 -109856221 + L2 LINE L2 1951 2480 -833 1833 139 46 4 chr12 34426268 34426549 -109855940 + AluJo SINE Alu 6 298 -14 1951 226 78 115 chr12 34426549 34427112 -109855377 + L2 LINE L2 2480 3069 -244 1164 139 0 0 chr12 34427164 34427329 -109855160 + FRAM SINE Alu 11 175 -1 516 237 36 104 chr12 34427340 34427589 -109854900 + L2 LINE L2 3082 3313 0 21 36 0 0 chr12 34427740 34427768 -109854721 + AT_rich Low_complexity Low_complexity 1 28 0 654 228 31 0 chr12 34428349 34428476 -109854013 + FLAM_A SINE Alu 1 131 -2 2623 47 0 0 chr12 34428921 34429222 -109853267 - AluY SINE Alu -10 301 1 23 33 0 0 chr12 34429321 34429351 -109853138 + AT_rich Low_complexity Low_complexity 1 30 0 1516 162 13 45 chr12 34429354 34429662 -109852827 + AluJb SINE Alu 1 298 -14 932 184 6 18 chr12 34429743 34429906 -109852583 - FRAM SINE Alu -4 162 2 320 214 36 12 chr12 34429950 34430034 -109852455 + L1ME LINE L1 5698 5783 -338 627 76 36 53 chr12 34430263 34430662 -109851827 + (TA)n Simple_repeat Simple_repeat 1 392 0 2035 144 0 0 chr12 34430662 34430946 -109851543 - AluSx SINE Alu -27 285 2 1717 193 7 0 chr12 34431459 34431754 -109850735 - AluJo SINE Alu -15 297 1 338 296 125 17 chr12 34432229 34432405 -109850084 - MIR SINE MIR -15 247 53 259 307 55 49 chr12 34432447 34432610 -109849879 + MIR3 SINE MIR 32 195 -13 603 249 83 6 chr12 34432931 34433100 -109849389 + MIR SINE MIR 48 229 -33 4114 193 107 21 chr12 34434025 34434819 -109847670 - MER21B LTR ERV1 -1 862 1 62 52 0 0 chr12 34435341 34435438 -109847051 + AT_rich Low_complexity Low_complexity 1 97 0 705 186 0 0 chr12 34435540 34435642 -109846847 + FLAM_A SINE Alu 12 113 -29 2303 86 13 0 chr12 34435919 34436221 -109846268 + AluSx SINE Alu 1 306 -6 243 0 0 0 chr12 34436354 34436381 -109846108 + (T)n Simple_repeat Simple_repeat 1 27 0 843 164 113 19 chr12 34436856 34437015 -109845474 + AluJb SINE Alu 137 310 -2 2322 87 3 0 chr12 34437568 34437866 -109844623 - AluSg SINE Alu -11 299 1 28 0 0 0 chr12 34437866 34437894 -109844595 + AT_rich Low_complexity Low_complexity 1 28 0 1846 156 24 0 chr12 34437995 34438290 -109844199 - AluSx SINE Alu -2 310 9 390 108 14 54 chr12 34438290 34438364 -109844125 - L1MC2 LINE L1 -374 5970 5900 496 151 0 0 chr12 34438364 34438437 -109844052 - FLAM_A SINE Alu -10 132 60 914 172 178 44 chr12 34438437 34438585 -109843904 + L1MC4 LINE L1 6929 7056 -986 333 68 0 0 chr12 34438585 34438629 -109843860 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 914 172 178 44 chr12 34438629 34438800 -109843689 + L1MC4 LINE L1 7056 7291 -751 2117 118 3 7 chr12 34438808 34439104 -109843385 - AluSx SINE Alu -17 295 1 2543 121 105 5 chr12 34439104 34439552 -109842937 - L1MC2 LINE L1 -425 5908 5416 5228 184 86 76 chr12 34439566 34440025 -109842464 - L1MC4 LINE L1 -2 8040 7587 2109 101 28 0 chr12 34440025 34440312 -109842177 - AluSg SINE Alu -15 295 1 5228 184 86 76 chr12 34440312 34440347 -109842142 - L1MC4 LINE L1 -455 7587 7554 2362 87 10 0 chr12 34440347 34440645 -109841844 - AluY SINE Alu -10 301 1 5228 184 86 76 chr12 34440645 34440946 -109841543 - L1MC4 LINE L1 -488 7554 7257 2060 122 7 0 chr12 34440946 34441242 -109841247 + AluSx SINE Alu 1 298 -14 5228 184 86 76 chr12 34441242 34441999 -109840490 - L1MC4 LINE L1 -785 7257 6471 2033 162 43 28 chr12 34442000 34442544 -109839945 - MLT2A2 LTR ERVL 0 554 1 557 238 191 47 chr12 34442567 34442805 -109839684 - L1MC4a LINE L1 -1370 6438 6147 183 42 0 0 chr12 34442805 34442829 -109839660 + (TG)n Simple_repeat Simple_repeat 2 25 0 557 238 191 47 chr12 34442829 34442889 -109839600 - L1MC4a LINE L1 -1661 6147 6097 1704 152 0 18 chr12 34442929 34443212 -109839277 - AluJo SINE Alu 0 312 35 2462 73 0 13 chr12 34443915 34444230 -109838259 - AluY SINE Alu 0 311 1 620 130 87 17 chr12 34444230 34444345 -109838144 - AluJo SINE Alu -176 136 14 246 133 0 0 chr12 34444447 34444492 -109837997 - Alu SINE Alu 0 302 258 696 186 8 16 chr12 34444492 34444621 -109837868 + AluJb SINE Alu 179 306 -6 2310 104 0 0 chr12 34444625 34444923 -109837566 + AluSc SINE Alu 1 298 -11 225 282 161 16 chr12 34444942 34445066 -109837423 - L2 LINE L2 -1107 2207 2066 822 153 0 22 chr12 34445093 34445230 -109837259 + AluJo SINE Alu 1 134 -178 1684 236 299 7 chr12 34445230 34446064 -109836425 - L2 LINE L2 -1262 2052 976 2076 118 3 45 chr12 34446087 34446401 -109836088 - AluSq SINE Alu -12 301 1 195 247 148 12 chr12 34446421 34446502 -109835987 + MIR SINE MIR 161 252 -10 371 267 57 80 chr12 34446506 34446682 -109835807 + MER5B DNA MER1_type 1 172 -6 284 214 366 0 chr12 34446882 34446994 -109835495 + MER5A DNA MER1_type 31 183 -6 2353 95 0 0 chr12 34447423 34447719 -109834770 - AluY SINE Alu -15 296 1 848 170 44 159 chr12 34447763 34448033 -109834456 - MER8 DNA MER2_type 0 239 1 1888 92 115 0 chr12 34448636 34448897 -109833592 - AluSg SINE Alu -19 291 1 955 90 8 0 chr12 34448925 34449047 -109833442 - AluSq/x SINE Alu -189 123 1 22 0 0 0 chr12 34450803 34450825 -109831664 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 34453182 34453204 -109829285 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 34453230 34453259 -109829230 + AT_rich Low_complexity Low_complexity 1 29 0 198 233 67 0 chr12 34454268 34454328 -109828161 + L2 LINE L2 3207 3270 -2 2197 117 0 0 chr12 34454940 34455231 -109827258 + AluSq SINE Alu 1 291 -22 185 0 40 0 chr12 34455240 34455265 -109827224 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 713 182 177 0 chr12 34455959 34456151 -109826338 - MIR SINE MIR -14 248 23 1030 135 153 0 chr12 34456152 34456322 -109826167 - AluJo SINE Alu -114 198 3 2164 126 37 50 chr12 34456466 34456772 -109825717 + THE1C LTR MaLR 1 305 -70 2281 92 0 0 chr12 34456772 34457089 -109825400 - AluY SINE Alu 0 317 1 2164 126 37 50 chr12 34457089 34457160 -109825329 + THE1C LTR MaLR 305 375 0 2029 127 0 56 chr12 34457215 34457539 -109824950 + AluSx SINE Alu 1 306 -6 401 186 106 35 chr12 34457646 34457759 -109824730 + MER5C DNA MER1_type 2 122 -202 260 212 152 0 chr12 34457788 34457854 -109824635 + MER5C DNA MER1_type 234 309 -15 2122 98 17 7 chr12 34457855 34458150 -109824339 - AluSq SINE Alu -15 298 1 1390 238 63 19 chr12 34458174 34458359 -109824130 + MER58D DNA MER1_type 5 180 -2240 2247 86 4 0 chr12 34458359 34458671 -109823818 - AluSg SINE Alu 0 313 1 1390 238 63 19 chr12 34458671 34458850 -109823639 + MER58D DNA MER1_type 180 386 0 2291 96 3 0 chr12 34459404 34459695 -109822794 - AluSc SINE Alu -17 292 1 1775 99 130 0 chr12 34460425 34460678 -109821811 + AluSx SINE Alu 5 290 -12 312 325 43 70 chr12 34461179 34461508 -109820981 + L2 LINE L2 2366 2685 -629 823 202 76 15 chr12 34461508 34461732 -109820757 + AluJo SINE Alu 101 336 0 240 278 162 73 chr12 34461749 34462139 -109820350 + L2 LINE L2 2725 3187 -85 2256 103 0 3 chr12 34462600 34462900 -109819589 + AluSg SINE Alu 1 299 -11 205 364 73 18 chr12 34463070 34463180 -109819309 + L2 LINE L2 2750 2865 -449 1877 137 0 45 chr12 34463401 34463575 -109818914 - AluJb SINE Alu -12 300 145 2205 101 7 10 chr12 34463575 34463871 -109818618 - AluSc SINE Alu -14 295 1 1877 137 0 45 chr12 34463871 34464010 -109818479 - AluJb SINE Alu -167 145 1 428 278 164 23 chr12 34464431 34464827 -109817662 + L1MEd LINE L1 675 1126 -4993 298 304 56 8 chr12 34464996 34465121 -109817368 + MIR SINE MIR 105 235 -27 769 318 132 68 chr12 34465599 34465719 -109816770 + L2 LINE L2 90 201 -3112 1966 98 58 0 chr12 34465719 34465995 -109816494 - AluSp SINE Alu -21 292 1 769 318 132 68 chr12 34465995 34467058 -109815431 + L2 LINE L2 201 1195 -2118 2305 100 0 3 chr12 34467058 34467358 -109815131 + AluSg SINE Alu 1 299 -11 2455 75 3 0 chr12 34467365 34467673 -109814816 + AluSp SINE Alu 1 309 -4 769 318 132 68 chr12 34467673 34468046 -109814443 + L2 LINE L2 1200 1548 -1765 2340 93 10 0 chr12 34468046 34468347 -109814142 - AluSq SINE Alu -9 304 1 769 318 132 68 chr12 34468347 34468634 -109813855 + L2 LINE L2 1548 3307 -6 2121 118 3 0 chr12 34468962 34469251 -109813238 + AluSx SINE Alu 23 312 0 1837 161 16 10 chr12 34469736 34470041 -109812448 + AluJo SINE Alu 1 307 -5 34 0 0 0 chr12 34471134 34471168 -109811321 + AT_rich Low_complexity Low_complexity 1 34 0 2177 107 3 3 chr12 34471617 34471906 -109810583 + AluSq SINE Alu 1 289 -24 2085 132 10 0 chr12 34472325 34472620 -109809869 + AluSx SINE Alu 1 298 -14 364 120 0 0 chr12 34473195 34473268 -109809221 - Alu SINE Alu 0 308 236 1018 141 0 7 chr12 34473268 34473417 -109809072 - AluSq/x SINE Alu -165 148 1 2052 64 131 0 chr12 34473547 34473814 -109808675 + AluSx SINE Alu 1 302 0 982 192 0 6 chr12 34473819 34473986 -109808503 + FRAM SINE Alu 1 166 0 230 410 20 0 chr12 34474405 34474505 -109807984 - L2 LINE L2 -19 3253 3152 2393 71 0 14 chr12 34474868 34475162 -109807327 - AluY SINE Alu -21 290 1 21 57 0 0 chr12 34475334 34475369 -109807120 + AT_rich Low_complexity Low_complexity 1 35 0 1445 197 99 38 chr12 34477005 34477370 -109805119 + MSTD LTR MaLR 1 387 -9 1784 182 115 3 chr12 34478122 34478513 -109803976 + MER74A LTR ERVL 1 435 -123 2380 185 90 8 chr12 34478718 34479249 -109803240 - L1MB7 LINE L1 0 6184 5610 8439 117 30 14 chr12 34479276 34480395 -109802094 - HSMAR2 DNA Mariner 0 1302 158 1677 155 19 62 chr12 34480395 34480717 -109801772 - AluJo SINE Alu -4 308 1 8439 117 30 14 chr12 34480717 34480878 -109801611 - HSMAR2 DNA Mariner -1144 158 1 1917 194 17 3 chr12 34481609 34481960 -109800529 - MER52A LTR ERV1 0 1755 1400 1456 198 23 0 chr12 34481930 34482273 -109800216 - MER52A LTR ERV1 -1099 656 247 * 352 219 0 0 chr12 34482268 34482341 -109800148 - MER52A LTR ERV1 -1678 77 5 * 1785 121 98 8 chr12 34482523 34482788 -109799701 - AluSx SINE Alu -23 289 1 368 279 109 20 chr12 34483833 34483980 -109798509 - MIR SINE MIR -75 187 28 1431 115 217 12 chr12 34484958 34485234 -109797255 + AluSx SINE Alu 1 302 0 2015 121 23 16 chr12 34486308 34486615 -109795874 + AluSx SINE Alu 1 309 -3 182 340 19 0 chr12 34486615 34486668 -109795821 + MER5A DNA MER1_type 68 121 -68 793 185 99 0 chr12 34486682 34486833 -109795656 - AluSg/x SINE Alu -12 298 133 26 50 0 0 chr12 34487912 34487952 -109794537 + AT_rich Low_complexity Low_complexity 1 40 0 351 271 51 33 chr12 34487988 34488140 -109794349 - MIR SINE MIR -66 142 11 272 284 0 0 chr12 34488235 34488302 -109794187 - MIR SINE MIR -7 255 189 2184 142 0 0 chr12 34488883 34489185 -109793304 + AluSx SINE Alu 1 302 -10 303 304 44 19 chr12 34489203 34489361 -109793128 + L1M4 LINE L1 77 238 -6304 490 194 47 0 chr12 34489547 34489676 -109792813 + L1M4 LINE L1 1423 1557 -5077 411 195 0 0 chr12 34489685 34489762 -109792727 + FLAM_A SINE Alu 53 129 -13 1081 230 17 34 chr12 34489769 34490115 -109792374 + L1M4 LINE L1 1513 1852 -4794 1664 157 66 11 chr12 34490135 34490421 -109792068 + AluJo SINE Alu 1 302 -10 2279 74 16 19 chr12 34490436 34490745 -109791744 + AluY SINE Alu 1 308 -3 259 314 55 24 chr12 34490958 34491248 -109791241 + L1M4 LINE L1 2311 2609 -4216 2039 111 3 30 chr12 34491997 34492295 -109790194 - AluJb SINE Alu -21 291 2 296 250 0 0 chr12 34492890 34492950 -109789539 + L2 LINE L2 3212 3271 -1 186 343 61 30 chr12 34493008 34493107 -109789382 + MIR SINE MIR 19 120 -88 264 170 0 0 chr12 34493514 34493567 -109788922 + A-rich Low_complexity Low_complexity 1 53 0 1991 112 3 7 chr12 34494276 34494562 -109787927 + AluSg SINE Alu 3 287 -23 2425 17 11 3 chr12 34494662 34494949 -109787540 - AluY SINE Alu -22 289 1 212 342 63 0 chr12 34495047 34495126 -109787363 - L2 LINE L2 0 3272 3189 37 0 0 0 chr12 34496031 34496068 -109786421 + AT_rich Low_complexity Low_complexity 1 37 0 840 167 79 3 chr12 34496068 34496285 -109786204 + AluJb SINE Alu 1 301 -11 388 252 8 16 chr12 34496292 34496419 -109786070 - L1MC5 LINE L1 -65 7896 7771 323 254 44 53 chr12 34496487 34496601 -109785888 + L2 LINE L2 3201 3313 0 2414 91 3 0 chr12 34497201 34497508 -109784981 - AluSp SINE Alu -5 308 1 228 221 162 0 chr12 34498774 34498842 -109783647 + MLT1L LTR MaLR 537 615 0 2204 108 0 3 chr12 34499115 34499412 -109783077 - AluSg SINE Alu -14 296 1 926 208 118 47 chr12 34499438 34499524 -109782965 - L1ME1 LINE L1 -9 6157 6079 3419 120 7 35 chr12 34499524 34500066 -109782423 - MER1A DNA MER1_type 0 527 1 926 208 118 47 chr12 34500066 34500301 -109782188 - L1ME1 LINE L1 -87 6079 5813 579 218 76 91 chr12 34500896 34501093 -109781396 - MIR SINE MIR 0 262 69 23 0 0 0 chr12 34501277 34501300 -109781189 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 34501769 34501797 -109780692 + AT_rich Low_complexity Low_complexity 1 28 0 1312 126 6 0 chr12 34501880 34502083 -109780406 + AluSg/x SINE Alu 103 306 0 883 239 45 1 chr12 34503364 34503603 -109778886 - MIR SINE MIR -7 255 4 2332 95 0 7 chr12 34503829 34504133 -109778356 - AluSq SINE Alu -10 303 2 339 135 19 0 chr12 34504315 34504367 -109778122 - AluSg/x SINE Alu -51 251 199 180 200 0 107 chr12 34504431 34504506 -109777983 - MIR SINE MIR -129 133 67 1066 204 40 13 chr12 34504985 34505211 -109777278 - MIR SINE MIR -24 238 7 200 246 29 87 chr12 34505937 34506006 -109776483 - MIR SINE MIR -121 87 23 273 283 152 86 chr12 34506150 34506419 -109776070 + L2 LINE L2 2124 2410 -904 1951 117 17 33 chr12 34506474 34506797 -109775692 + AluJb SINE Alu 1 312 0 380 274 11 21 chr12 34506833 34506928 -109775561 - MIR SINE MIR -157 105 12 2197 118 10 0 chr12 34506947 34507251 -109775238 - AluSx SINE Alu -5 307 1 196 292 92 60 chr12 34507432 34507617 -109774872 + L2 LINE L2 2544 2734 -580 181 303 157 11 chr12 34508270 34508299 -109774190 + L2 LINE L2 3072 3095 -218 1930 156 7 3 chr12 34508299 34508606 -109773883 - AluJo SINE Alu -4 308 1 181 303 157 11 chr12 34508606 34508754 -109773735 + L2 LINE L2 3095 3275 -38 348 24 0 0 chr12 34508896 34508937 -109773552 + (TA)n Simple_repeat Simple_repeat 2 42 0 342 0 0 0 chr12 34509559 34509597 -109772892 + (TA)n Simple_repeat Simple_repeat 1 38 0 1728 145 25 11 chr12 34509600 34509883 -109772606 - AluJb SINE Alu -25 287 1 253 379 14 0 chr12 34510284 34510392 -109772097 - MIR SINE MIR -105 103 7 267 83 42 0 chr12 34510416 34510464 -109772025 - L1MB3 LINE L1 0 6183 6134 185 267 57 95 chr12 34511390 34511463 -109771026 + MIR3 SINE MIR 84 153 -55 1752 195 0 0 chr12 34511463 34511765 -109770724 - AluJb SINE Alu -10 302 1 185 267 57 95 chr12 34511765 34511796 -109770693 + MIR3 SINE MIR 153 184 -24 26 30 0 0 chr12 34513114 34513147 -109769342 + AT_rich Low_complexity Low_complexity 1 33 0 612 298 184 20 chr12 34513383 34513842 -109768647 + L2 LINE L2 2613 3150 -163 2686 30 0 0 chr12 34513915 34514214 -109768275 - AluY SINE Alu -12 299 1 304 305 95 29 chr12 34514331 34514436 -109768053 + L2 LINE L2 3200 3311 -2 445 289 121 29 chr12 34514464 34514703 -109767786 - MIR SINE MIR 0 262 2 2369 79 13 3 chr12 34515476 34515779 -109766710 + AluSp SINE Alu 1 306 -7 24 0 0 0 chr12 34516445 34516469 -109766020 + AT_rich Low_complexity Low_complexity 1 24 0 230 311 100 0 chr12 34517808 34517898 -109764591 - MIR SINE MIR -87 175 77 2226 181 26 14 chr12 34517898 34518323 -109764166 + MSTB1 LTR MaLR 1 430 -2 217 343 20 30 chr12 34519549 34519648 -109762841 + L2 LINE L2 3179 3276 -37 2380 52 3 3 chr12 34520112 34520403 -109762086 + AluY SINE Alu 1 291 -20 317 181 28 14 chr12 34520593 34520665 -109761824 + MER34 LTR ERV1 442 514 -28 198 103 0 0 chr12 34521387 34521416 -109761073 + (TG)n Simple_repeat Simple_repeat 2 30 0 786 186 7 14 chr12 34521442 34521587 -109760902 - FRAM SINE Alu -33 143 1 2213 129 0 0 chr12 34522032 34522334 -109760155 - AluSx SINE Alu -10 302 1 2013 100 4 0 chr12 34522771 34523032 -109759457 + AluSx SINE Alu 6 267 -45 1938 214 152 7 chr12 34523165 34523713 -109758776 + L1ME1 LINE L1 5505 6131 -35 1683 163 57 0 chr12 34523714 34523997 -109758492 - AluJb SINE Alu -11 301 3 326 31 0 62 chr12 34524081 34524145 -109758344 + (TA)n Simple_repeat Simple_repeat 1 60 0 798 244 121 4 chr12 34524150 34524401 -109758088 - L1ME LINE L1 -375 5789 5508 372 116 35 0 chr12 34524438 34524524 -109757965 + (TA)n Simple_repeat Simple_repeat 1 89 0 2273 98 0 3 chr12 34524657 34524954 -109757535 + AluSc SINE Alu 1 296 -13 215 276 58 58 chr12 34525405 34525492 -109756997 - MIR3 SINE MIR -5 203 117 261 306 224 8 chr12 34525524 34525658 -109756831 - MIR SINE MIR -94 168 6 479 367 78 45 chr12 34526307 34526705 -109755784 - L2 LINE L2 0 3272 2862 1052 100 0 7 chr12 34526711 34526851 -109755638 - AluSq/x SINE Alu -173 139 1 404 214 51 101 chr12 34527676 34527763 -109754726 - LTR16A LTR ERVL -222 228 153 2144 114 3 0 chr12 34527763 34528061 -109754428 - AluSx SINE Alu -9 303 5 404 214 51 101 chr12 34528061 34528151 -109754338 - LTR16A LTR ERVL -297 153 60 905 233 15 15 chr12 34528199 34528470 -109754019 + L1MA9 LINE L1 6006 6276 -36 245 293 93 0 chr12 34528737 34528887 -109753602 - L1ME3 LINE L1 -212 5950 5787 1228 96 46 67 chr12 34529128 34529367 -109753122 + MER50 LTR ERV1 1 234 -500 * 1485 168 3 14 chr12 34529365 34529650 -109752839 + MER50 LTR ERV1 433 714 -20 195 42 0 0 chr12 34530665 34530689 -109751800 + (TG)n Simple_repeat Simple_repeat 2 25 0 2319 97 0 0 chr12 34531647 34531956 -109750533 - AluY SINE Alu -2 309 1 2272 98 3 0 chr12 34531965 34532262 -109750227 - AluSx SINE Alu -14 298 1 693 52 21 0 chr12 34532439 34532536 -109749953 - L1PB1 LINE L1 0 6151 6053 2282 165 61 38 chr12 34533151 34533477 -109749012 - L1MA9 LINE L1 -6 6306 5989 2039 125 10 10 chr12 34533477 34533781 -109748708 - AluJb SINE Alu -8 304 1 1361 177 108 14 chr12 34533790 34534067 -109748422 - AluJb SINE Alu -9 303 1 2282 165 61 38 chr12 34534067 34534215 -109748274 - L1MA9 LINE L1 -330 5982 5804 286 42 42 0 chr12 34534215 34534263 -109748226 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2282 165 61 38 chr12 34534263 34534354 -109748135 - L1MA9 LINE L1 -508 5804 5717 2116 126 0 0 chr12 34534685 34534978 -109747511 - AluSx SINE Alu -17 295 3 447 279 153 51 chr12 34535024 34535397 -109747092 - MLT1J LTR MaLR -1 510 100 345 192 0 0 chr12 34535428 34535501 -109746988 - LTR30 LTR ERV1 -98 624 552 328 248 83 9 chr12 34535500 34535609 -109746880 - MLT1J LTR MaLR -394 117 1 * 243 296 291 11 chr12 34536218 34536397 -109746092 - MIR SINE MIR 0 262 34 419 300 200 13 chr12 34536881 34537181 -109745308 + MLT1L LTR MaLR 10 365 -250 1878 125 65 44 chr12 34537690 34538057 -109744432 - THE1C LTR MaLR 0 375 1 894 267 59 4 chr12 34538058 34538294 -109744195 - MIR SINE MIR -12 250 2 195 200 238 50 chr12 34538397 34538477 -109744012 + MIR SINE MIR 35 129 -133 2048 114 44 0 chr12 34538507 34538805 -109743684 + AluY SINE Alu 1 311 0 241 370 81 19 chr12 34538882 34539093 -109743396 - L3 LINE CR1 -219 1358 1135 281 268 0 0 chr12 34539439 34539495 -109742994 + L3 LINE CR1 1517 1572 -5 229 266 0 43 chr12 34539611 34539705 -109742784 - L1MC4 LINE L1 -1339 6703 6614 194 0 39 0 chr12 34541447 34541473 -109741016 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 207 319 97 14 chr12 34542610 34542682 -109739807 + L2 LINE L2 3149 3226 -46 2083 84 33 4 chr12 34542702 34542995 -109739494 + AluSc SINE Alu 1 301 0 2072 85 85 0 chr12 34543347 34543628 -109738861 - AluY SINE Alu -6 305 1 2218 139 0 0 chr12 34545111 34545414 -109737075 - AluSx SINE Alu -9 303 1 2339 60 0 54 chr12 34546118 34546432 -109736057 - AluY SINE Alu -14 297 1 369 283 52 24 chr12 34546550 34546762 -109735727 + L1MC4a LINE L1 5558 5775 -346 24 32 0 0 chr12 34546860 34546891 -109735598 + AT_rich Low_complexity Low_complexity 1 31 0 561 129 0 12 chr12 34546891 34546976 -109735513 + AluS SINE Alu 1 84 -228 337 242 53 30 chr12 34547076 34547208 -109735281 + L1ME1 LINE L1 1597 1731 -4665 2336 71 7 0 chr12 34547208 34547514 -109734975 + AluSp SINE Alu 1 308 0 1837 128 0 102 chr12 34547527 34547870 -109734619 + AluSx SINE Alu 3 310 -2 2108 235 60 80 chr12 34548396 34549147 -109733342 + L1ME1 LINE L1 3451 4215 -2020 336 48 0 0 chr12 34549147 34549189 -109733300 + (CA)n Simple_repeat Simple_repeat 2 43 0 2108 235 60 80 chr12 34549189 34549936 -109732553 + L1ME1 LINE L1 4215 4975 -1260 2307 118 0 0 chr12 34549936 34550240 -109732249 + AluSx SINE Alu 1 304 -8 1999 133 13 17 chr12 34550242 34550542 -109731947 + AluSx SINE Alu 1 299 -13 2108 235 60 80 chr12 34550542 34551114 -109731375 + L1ME1 LINE L1 4976 5466 -769 2045 152 7 0 chr12 34551114 34551423 -109731066 + AluJb SINE Alu 1 311 -1 2108 235 60 80 chr12 34551423 34551746 -109730743 + L1ME1 LINE L1 5466 5794 -441 694 218 24 97 chr12 34551758 34551889 -109730600 + L1ME1 LINE L1 5908 6006 -229 1935 151 3 3 chr12 34551889 34552187 -109730302 + AluJo SINE Alu 1 298 -14 694 218 24 97 chr12 34552187 34552353 -109730136 + L1ME1 LINE L1 6006 6183 -52 354 328 113 39 chr12 34552384 34552719 -109729770 + L1MC4a LINE L1 5771 6130 -1678 1576 100 9 18 chr12 34553103 34553323 -109729166 - AluSx SINE Alu -92 220 3 2164 132 0 3 chr12 34553327 34553630 -109728859 - AluSg SINE Alu -8 302 1 27 0 0 0 chr12 34553632 34553659 -109728830 + AT_rich Low_complexity Low_complexity 1 27 0 1717 133 0 50 chr12 34554153 34554432 -109728057 + AluSx SINE Alu 43 307 -5 1892 162 0 29 chr12 34554546 34554855 -109727634 + AluJb SINE Alu 1 300 -12 912 202 12 12 chr12 34556098 34556271 -109726218 - AluJo/FRAM SINE Alu -6 306 134 2479 63 0 3 chr12 34556271 34556574 -109725915 - AluY SINE Alu -9 302 1 873 147 22 22 chr12 34556593 34556729 -109725760 + AluJo SINE Alu 1 136 -176 2343 69 10 29 chr12 34556803 34557109 -109725380 - AluSp SINE Alu -13 300 1 5795 120 11 34 chr12 34557267 34558650 -109723839 + L1PB2 LINE L1 4781 6143 -8 181 344 98 41 chr12 34558980 34559102 -109723387 + L2 LINE L2 3138 3266 -6 658 268 73 37 chr12 34559195 34559441 -109723048 + MIR SINE MIR 6 260 -2 696 172 0 0 chr12 34561367 34561483 -109721006 - AluSg/x SINE Alu -2 308 193 1891 117 7 10 chr12 34561818 34562117 -109720372 + AluSc SINE Alu 7 304 -5 657 101 10 10 chr12 34562148 34562247 -109720242 + AluS SINE Alu 1 99 -214 808 171 36 0 chr12 34562247 34562387 -109720102 + MER58B DNA MER1_type 196 340 -1 24 32 0 0 chr12 34562506 34562537 -109719952 + AT_rich Low_complexity Low_complexity 1 31 0 346 185 0 0 chr12 34563450 34563515 -109718974 + FLAM_A SINE Alu 1 65 -67 2205 75 4 14 chr12 34564549 34564849 -109717640 + AluSp SINE Alu 6 302 0 207 313 188 0 chr12 34565646 34565758 -109716731 - MIR SINE MIR -21 241 109 2291 88 0 7 chr12 34566254 34566548 -109715941 + AluSq SINE Alu 1 292 -21 225 269 127 37 chr12 34566929 34567063 -109715426 - MIR SINE MIR -42 220 75 2042 114 17 3 chr12 34567328 34567626 -109714863 + AluSx SINE Alu 1 302 -10 2275 106 10 0 chr12 34567797 34568098 -109714391 - AluSx SINE Alu -8 304 1 25 0 0 0 chr12 34569800 34569825 -109712664 + AT_rich Low_complexity Low_complexity 1 25 0 2231 94 3 0 chr12 34573028 34573314 -109709175 - AluSx SINE Alu -25 287 1 236 167 0 0 chr12 34573318 34573360 -109709129 - L1M4 LINE L1 -309 5869 5828 1547 166 93 0 chr12 34573361 34573674 -109708815 + MER7A DNA MER2_type 2 341 -5 360 167 108 10 chr12 34573675 34573777 -109708712 - L1M4 LINE L1 -367 5817 5706 2073 131 3 0 chr12 34573836 34574133 -109708356 - AluSx SINE Alu -14 298 1 2557 62 0 0 chr12 34574618 34574924 -109707565 - AluY SINE Alu -5 306 1 2416 74 3 0 chr12 34576161 34576460 -109706029 + AluSp SINE Alu 1 300 -13 195 296 0 42 chr12 34577465 34577536 -109704953 - MIR SINE MIR -103 105 38 2087 131 0 32 chr12 34578255 34578568 -109703921 - AluSq SINE Alu -10 303 1 1919 133 41 3 chr12 34579272 34579566 -109702923 - AluSx SINE Alu -7 305 1 705 159 0 38 chr12 34579907 34580039 -109702450 - FLAM_C SINE Alu -16 127 1 24 0 0 0 chr12 34580184 34580208 -109702281 + AT_rich Low_complexity Low_complexity 1 24 0 255 81 0 0 chr12 34580846 34580883 -109701606 + MADE1 DNA Mariner 2 38 -42 2283 78 10 0 chr12 34581314 34581607 -109700882 - AluY SINE Alu -15 296 1 2323 73 0 3 chr12 34581941 34582230 -109700259 - AluSg SINE Alu -21 289 2 1934 143 10 10 chr12 34582798 34583098 -109699391 - AluJo SINE Alu -12 300 1 264 228 35 0 chr12 34583294 34583343 -109699146 + MER7A DNA MER2_type 4 54 -294 1586 116 113 14 chr12 34583343 34583627 -109698862 - MER1B DNA MER1_type -2 337 26 1391 197 49 0 chr12 34583626 34583910 -109698579 + MER7A DNA MER2_type 50 345 -1 * 342 254 88 26 chr12 34583939 34584053 -109698436 - L1ME3A LINE L1 -8 6162 6042 229 67 0 0 chr12 34584054 34584084 -109698405 + Alu SINE Alu 1 30 -272 240 280 43 32 chr12 34584084 34584177 -109698312 + L1M4 LINE L1 4275 4368 -1778 2152 106 48 0 chr12 34584203 34584496 -109697993 + AluSx SINE Alu 1 307 -5 525 277 125 19 chr12 34584585 34584763 -109697726 - L1M4 LINE L1 -1405 4741 4583 1262 183 168 23 chr12 34584763 34585025 -109697464 + AluJb SINE Alu 1 300 -2 525 277 125 19 chr12 34585025 34585214 -109697275 - L1M4 LINE L1 -1563 4583 4335 1443 57 0 6 chr12 34586442 34586617 -109695872 - AluSg/x SINE Alu -10 300 127 267 262 24 36 chr12 34587809 34587893 -109694596 + MIR SINE MIR 119 201 -61 921 287 46 31 chr12 34588407 34588822 -109693667 - LTR16A LTR ERVL -6 444 24 1714 163 20 17 chr12 34589083 34589378 -109693111 - AluJo SINE Alu -16 296 1 301 248 34 34 chr12 34589480 34589597 -109692892 - MER87 LTR ERV1 -26 515 399 2429 86 3 0 chr12 34590242 34590546 -109691943 + AluSp SINE Alu 1 305 -8 2370 93 0 3 chr12 34591394 34591706 -109690783 + AluSx SINE Alu 1 311 -1 2385 89 0 0 chr12 34592557 34592859 -109689630 + AluSg SINE Alu 1 302 -8 336 263 53 26 chr12 34593450 34593564 -109688925 - L2 LINE L2 -2 3311 3195 402 261 33 92 chr12 34594566 34594695 -109687794 + MIR3 SINE MIR 21 137 -71 2333 102 0 10 chr12 34594695 34595009 -109687480 + AluY SINE Alu 1 311 0 402 261 33 92 chr12 34595009 34595063 -109687426 + MIR3 SINE MIR 137 193 -15 2125 122 6 13 chr12 34595173 34595485 -109687004 + AluSx SINE Alu 1 310 -2 2093 115 7 7 chr12 34595487 34595783 -109686706 + AluSx SINE Alu 3 298 -14 386 228 20 20 chr12 34596351 34596452 -109686037 - MER94 DNA DNA -33 101 1 1665 154 10 50 chr12 34596498 34596797 -109685692 - AluJb SINE Alu -25 287 1 4742 144 41 41 chr12 34596861 34597465 -109685024 - L1PB4 LINE L1 -4 6152 5538 2307 125 3 0 chr12 34597465 34597776 -109684713 - AluSq SINE Alu -1 312 1 4742 144 41 41 chr12 34597776 34598267 -109684222 - L1PB4 LINE L1 -618 5538 5048 338 311 68 0 chr12 34598434 34598566 -109683923 - MIR SINE MIR 0 262 122 208 346 144 10 chr12 34598645 34598749 -109683740 - L2 LINE L2 -5 3267 3150 2664 14 0 0 chr12 34599261 34599549 -109682940 - AluYa5 SINE Alu 0 311 24 2320 141 60 74 chr12 34600143 34600577 -109681912 - MSTC LTR MaLR 0 428 1 470 283 52 12 chr12 34600837 34601010 -109681479 - L1MEc LINE L1 -6177 219 40 296 209 86 50 chr12 34601467 34601606 -109680883 - Charlie7 DNA MER1_type 0 2612 2469 328 253 0 23 chr12 34601615 34601702 -109680787 - Charlie7 DNA MER1_type -2516 96 12 540 311 90 6 chr12 34602435 34602747 -109679742 - L1MC4a LINE L1 -1894 5914 5577 2169 127 3 3 chr12 34603135 34603443 -109679046 + AluSx SINE Alu 5 312 0 1157 180 63 38 chr12 34603486 34603725 -109678764 + AluJo SINE Alu 35 279 -33 459 204 7 22 chr12 34603731 34603868 -109678621 + GA-rich Low_complexity Low_complexity 3 137 0 323 200 33 0 chr12 34603970 34604030 -109678459 + AluSp/q SINE Alu 164 225 -78 189 0 0 0 chr12 34604030 34604051 -109678438 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 443 323 37 18 chr12 34605053 34605217 -109677272 + MIR SINE MIR 9 175 -87 352 328 23 15 chr12 34605872 34606003 -109676486 - L3b LINE CR1 -255 1328 1197 1179 154 0 0 chr12 34606004 34606179 -109676310 - AluSq SINE Alu -13 300 126 2280 94 3 7 chr12 34606179 34606488 -109676001 - AluY SINE Alu -3 308 1 858 147 22 22 chr12 34606507 34606643 -109675846 + AluJo SINE Alu 1 136 -176 2280 72 13 30 chr12 34606717 34607022 -109675467 - AluSp SINE Alu -13 300 1 6257 119 11 34 chr12 34607180 34608563 -109673926 + L1PB2 LINE L1 4781 6143 -8 653 268 73 37 chr12 34609108 34609354 -109673135 + MIR SINE MIR 6 260 -2 2174 126 3 3 chr12 34611279 34611589 -109670900 - AluSx SINE Alu -2 310 1 1998 103 4 11 chr12 34611718 34611991 -109670498 + AluSx SINE Alu 1 271 -41 243 0 0 0 chr12 34611999 34612026 -109670463 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 315 309 86 5 chr12 34612036 34612246 -109670243 - L1M4 LINE L1 -2379 3767 3541 4591 105 38 4 chr12 34612250 34612927 -109669562 - Tigger4(Zombi) DNA MER2_type 0 2731 2032 6872 92 3 5 chr12 34612928 34614530 -109667959 - L1PA11 LINE L1 -1 7611 5997 13942 198 72 27 chr12 34614531 34618653 -109663836 - L1PA11 LINE L1 -2180 5404 4 12088 126 55 21 chr12 34618656 34619306 -109663183 - Tigger4(Zombi) DNA MER2_type -690 2041 1414 2862 3 0 0 chr12 34619306 34619611 -109662878 - AluYa5 SINE Alu -6 305 1 12088 126 55 21 chr12 34619611 34620934 -109661555 - Tigger4(Zombi) DNA MER2_type -1317 1414 2 2467 76 0 3 chr12 34621133 34621434 -109661055 - AluSx SINE Alu -12 300 1 242 185 11 54 chr12 34621774 34621866 -109660623 + (CAAA)n Simple_repeat Simple_repeat 1 88 0 1779 185 3 10 chr12 34622128 34622442 -109660047 + AluJo SINE Alu 1 312 0 442 330 113 57 chr12 34622625 34623272 -109659217 + L2 LINE L2 365 1073 -2241 2276 98 0 3 chr12 34623272 34623568 -109658921 + AluSx SINE Alu 1 295 -17 442 330 113 57 chr12 34623568 34623766 -109658723 + L2 LINE L2 1073 1258 -2056 270 357 48 18 chr12 34623816 34623984 -109658505 + L2 LINE L2 2686 2858 -456 241 351 53 38 chr12 34624014 34624145 -109658344 + L2 LINE L2 3136 3268 -4 245 238 0 16 chr12 34624645 34624708 -109657781 - L1ME LINE L1 -739 5431 5370 6050 124 19 15 chr12 34624719 34625732 -109656757 - L1PA16 LINE L1 -9 6157 5141 1430 193 11 7 chr12 34625732 34626012 -109656477 + L1P LINE L1 4810 5090 -1056 742 236 52 39 chr12 34626043 34626424 -109656065 - L1ME LINE L1 -802 5344 4959 1997 155 48 0 chr12 34626431 34626747 -109655742 + MER1B DNA MER1_type 9 339 0 2120 125 10 10 chr12 34626812 34627115 -109655374 + AluSx SINE Alu 1 303 -9 24 0 0 0 chr12 34627166 34627190 -109655299 + AT_rich Low_complexity Low_complexity 1 24 0 2218 103 0 0 chr12 34627626 34627980 -109654509 + AluSx SINE Alu 1 354 0 245 237 82 52 chr12 34628213 34628310 -109654179 + L2 LINE L2 3214 3313 0 204 40 0 0 chr12 34628490 34628515 -109653974 + (CA)n Simple_repeat Simple_repeat 2 26 0 1551 281 34 57 chr12 34629199 34629794 -109652695 + MLT1K LTR MaLR 2 582 -6 623 270 122 0 chr12 34630831 34631020 -109651469 + MIR SINE MIR 32 243 -19 209 205 121 72 chr12 34631545 34631628 -109650861 - L2 LINE L2 -631 2683 2597 2158 111 3 26 chr12 34631765 34632072 -109650417 + AluSx SINE Alu 3 302 -10 182 311 41 74 chr12 34632084 34632206 -109650283 - L2 LINE L2 -925 2389 2272 2372 68 20 3 chr12 34632237 34632531 -109649958 - AluY SINE Alu -12 299 1 281 228 114 26 chr12 34633146 34633260 -109649229 + MIR3 SINE MIR 49 172 -36 2562 55 0 16 chr12 34633789 34634101 -109648388 - AluSc SINE Alu -2 307 1 1737 144 38 14 chr12 34634251 34634542 -109647947 + AluJb SINE Alu 1 298 -14 2311 95 3 10 chr12 34634653 34634959 -109647530 + AluY SINE Alu 1 304 -7 284 211 56 0 chr12 34635020 34635091 -109647398 + MER116 DNA Mariner 2 76 -4 338 304 43 14 chr12 34635379 34635517 -109646972 - MIR3 SINE MIR -7 201 60 1470 183 44 0 chr12 34637559 34637856 -109644633 - AluJb SINE Alu 0 309 1 1782 168 50 0 chr12 34637873 34638170 -109644319 - AluJo SINE Alu 0 312 1 2223 125 0 0 chr12 34638286 34638591 -109643898 - AluSx SINE Alu -7 305 1 2349 95 3 0 chr12 34639255 34639551 -109642938 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr12 34639947 34639977 -109642512 + AT_rich Low_complexity Low_complexity 1 30 0 2284 95 14 3 chr12 34640731 34641027 -109641462 + AluSc SINE Alu 1 299 -10 2145 127 3 0 chr12 34641594 34641902 -109640587 + AluSg SINE Alu 1 309 -1 34 55 0 0 chr12 34642234 34642289 -109640200 + AT_rich Low_complexity Low_complexity 1 55 0 346 382 64 34 chr12 34642679 34642946 -109639543 + L2 LINE L2 2992 3266 -6 234 250 16 31 chr12 34643316 34643380 -109639109 + GA-rich Low_complexity Low_complexity 4 66 0 342 0 0 0 chr12 34643607 34643645 -109638844 + (TG)n Simple_repeat Simple_repeat 2 39 0 2305 105 0 3 chr12 34643677 34643983 -109638506 - AluSg SINE Alu -5 305 1 276 134 15 30 chr12 34644157 34644224 -109638265 + GA-rich Low_complexity Low_complexity 1 66 0 643 231 57 94 chr12 34644367 34644452 -109638037 + MER63A DNA MER1_type 2 89 -1599 678 180 90 0 chr12 34644452 34644574 -109637915 - FLAM_A SINE Alu 0 133 1 643 231 57 94 chr12 34644574 34644700 -109637789 + MER63A DNA MER1_type 89 205 -5 817 280 62 8 chr12 34645880 34646123 -109636366 + MIR SINE MIR 7 262 0 3724 142 19 2 chr12 34646557 34647126 -109635363 + L1PA16 LINE L1 5587 6165 -1 186 133 0 0 chr12 34647261 34647291 -109635198 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 298 247 90 22 chr12 34648244 34648333 -109634156 + MLT1K LTR MaLR 494 588 0 847 157 121 0 chr12 34648680 34648846 -109633643 - MER5A DNA MER1_type -3 186 1 1918 156 3 3 chr12 34648928 34649229 -109633260 - AluJo SINE Alu -11 301 1 671 144 127 0 chr12 34649406 34649524 -109632965 + FLAM_C SINE Alu 1 133 0 2049 121 13 10 chr12 34650871 34651169 -109631320 - AluSx SINE Alu -13 299 1 2124 128 0 0 chr12 34651307 34651603 -109630886 - AluSg SINE Alu -14 296 1 2306 81 0 10 chr12 34651616 34651911 -109630578 - AluSg SINE Alu -18 292 1 217 268 37 37 chr12 34652818 34652900 -109629589 + L3 LINE CR1 671 752 -825 419 339 81 21 chr12 34653146 34653382 -109629107 + L3 LINE CR1 1286 1535 -42 197 318 59 24 chr12 34653417 34653502 -109628987 - MER5A DNA MER1_type -54 135 48 1183 69 0 98 chr12 34653900 34654073 -109628416 + AluSg SINE Alu 1 156 -154 2515 74 0 10 chr12 34654378 34654688 -109627801 - AluSp SINE Alu -6 307 1 956 155 13 0 chr12 34654690 34654845 -109627644 - FRAM SINE Alu -14 162 6 346 287 114 38 chr12 34655101 34655338 -109627151 - L2 LINE L2 -430 2884 2630 2365 82 16 3 chr12 34655694 34655998 -109626491 + AluSg SINE Alu 1 308 -2 2424 60 26 3 chr12 34656572 34656874 -109625615 + AluSq SINE Alu 1 309 -4 2010 118 4 11 chr12 34658211 34658491 -109623998 - AluSx SINE Alu -14 298 21 2465 70 3 6 chr12 34658881 34659193 -109623296 + AluY SINE Alu 1 311 0 183 280 80 13 chr12 34659988 34660063 -109622426 - L2 LINE L2 -665 2649 2570 2327 96 7 3 chr12 34660075 34660378 -109622111 + AluSp SINE Alu 1 304 -9 452 326 46 20 chr12 34660521 34660717 -109621772 + MIR SINE MIR 48 248 -14 228 111 0 0 chr12 34661139 34661175 -109621314 + (CA)n Simple_repeat Simple_repeat 2 37 0 322 310 25 65 chr12 34661199 34661399 -109621090 + L2 LINE L2 2864 3055 -217 673 165 47 16 chr12 34661433 34661560 -109620929 + FLAM_A SINE Alu 3 133 0 233 255 0 0 chr12 34661599 34661650 -109620839 + L2 LINE L2 3221 3271 -1 2127 115 0 7 chr12 34661756 34662052 -109620437 + AluSx SINE Alu 5 298 -14 1897 133 78 0 chr12 34662124 34662417 -109620072 + L1PA16 LINE L1 5841 6156 -10 21 0 0 0 chr12 34662615 34662636 -109619853 + AT_rich Low_complexity Low_complexity 1 21 0 308 212 26 88 chr12 34662655 34662768 -109619721 + MIR SINE MIR 110 215 -47 2008 129 3 20 chr12 34662836 34663130 -109619359 - AluJo SINE Alu -23 289 1 2121 86 9 76 chr12 34663876 34664191 -109618298 + AluSg SINE Alu 1 294 -16 2381 75 0 0 chr12 34665085 34665379 -109617110 - AluY SINE Alu -17 294 1 1377 133 0 5 chr12 34665939 34666135 -109616354 + AluY SINE Alu 95 289 -22 1289 178 78 0 chr12 34666200 34666419 -109616070 + MER46A DNA MER2_type 1 236 0 2220 103 0 13 chr12 34666552 34666854 -109615635 - AluSx SINE Alu -14 298 1 402 264 0 69 chr12 34667914 34668073 -109614416 + L2 LINE L2 2912 3059 -213 486 253 157 15 chr12 34668096 34668294 -109614195 + L1ME LINE L1 5545 5770 -351 24 32 0 0 chr12 34668478 34668509 -109613980 + AT_rich Low_complexity Low_complexity 1 31 0 2437 74 6 6 chr12 34668535 34668847 -109613642 + AluSx SINE Alu 1 312 0 335 332 81 27 chr12 34669221 34669540 -109612949 - L2 LINE L2 -461 2853 2470 2081 89 0 0 chr12 34669540 34669809 -109612680 + L1PA5 LINE L1 5886 6154 0 335 332 81 27 chr12 34669809 34669844 -109612645 - L2 LINE L2 -844 2470 2438 540 226 85 34 chr12 34669929 34670106 -109612383 - MIR SINE MIR -65 197 12 235 319 0 42 chr12 34670158 34670185 -109612304 - L2 LINE L2 -1292 2022 1995 1930 163 0 7 chr12 34670185 34670485 -109612004 + AluJo SINE Alu 1 298 -14 235 319 0 42 chr12 34670485 34670576 -109611913 - L2 LINE L2 -1319 1995 1909 1421 183 27 24 chr12 34670991 34671128 -109611361 + AluJo SINE Alu 3 138 -174 530 51 13 0 chr12 34671128 34671206 -109611283 + (TA)n Simple_repeat Simple_repeat 2 80 0 1421 183 27 24 chr12 34671206 34671363 -109611126 + AluJo SINE Alu 138 298 -14 292 303 61 13 chr12 34671619 34671933 -109610556 + L1M3 LINE L1 5107 5431 -743 22 35 0 0 chr12 34672458 34672487 -109610002 + AT_rich Low_complexity Low_complexity 1 29 0 1859 168 3 0 chr12 34672496 34672799 -109609690 - AluSx SINE Alu -8 304 1 402 294 46 30 chr12 34672838 34673035 -109609454 + L1ME LINE L1 5408 5607 -514 3169 256 96 41 chr12 34673063 34673612 -109608877 + L1MEc LINE L1 85 602 -5615 1252 70 25 0 chr12 34673612 34673769 -109608720 + L1PA8 LINE L1 5999 6159 -13 3169 256 96 41 chr12 34673769 34673793 -109608696 + L1MEc LINE L1 602 623 -5594 2257 97 0 0 chr12 34673793 34674099 -109608390 + AluSg SINE Alu 3 308 0 3169 256 96 41 chr12 34674099 34674813 -109607676 + L1MEc LINE L1 623 1296 -4921 473 103 0 0 chr12 34674914 34674982 -109607507 + AluSp/q SINE Alu 238 305 -8 1980 148 7 0 chr12 34675525 34675823 -109606666 - AluJb SINE Alu -12 300 1 2206 114 0 7 chr12 34675948 34676255 -109606234 - AluSx SINE Alu -7 305 1 1718 166 3 27 chr12 34677178 34677473 -109605016 - AluJo SINE Alu -24 288 1 197 343 0 14 chr12 34677473 34677543 -109604946 - L2 LINE L2 -10 3303 3235 509 299 192 37 chr12 34678086 34678741 -109603748 - L2 LINE L2 -742 2572 1816 1876 163 0 3 chr12 34678955 34679255 -109603234 - AluJb SINE Alu -13 299 1 2166 113 3 0 chr12 34681676 34681967 -109600522 + AluSq SINE Alu 1 292 -21 2197 109 0 7 chr12 34681972 34682274 -109600215 + AluSq SINE Alu 1 300 -13 2422 65 3 3 chr12 34682546 34682854 -109599635 + AluSg SINE Alu 1 308 -2 604 143 0 31 chr12 34683849 34683947 -109598542 - FLAM_A SINE Alu -8 134 40 934 62 0 0 chr12 34684091 34684203 -109598286 - AluSp/q SINE Alu -24 289 178 1659 183 116 45 chr12 34686276 34686599 -109595890 + MER39 LTR ERV1 1 299 -408 2156 128 0 0 chr12 34686599 34686895 -109595594 + AluSx SINE Alu 2 297 -15 1659 183 116 45 chr12 34686895 34687067 -109595422 + MER39 LTR ERV1 299 707 0 1618 120 42 94 chr12 34687798 34688106 -109594383 + AluSx SINE Alu 1 292 -20 1756 168 0 29 chr12 34689136 34689445 -109593044 + AluJb SINE Alu 1 300 -12 1786 151 7 0 chr12 34689888 34690166 -109592323 - AluSx SINE Alu -20 292 13 239 146 0 0 chr12 34740227 34740275 -109542214 - L1MB3 LINE L1 -7 6176 6129 416 303 123 0 chr12 34740295 34740450 -109542039 - L3 LINE CR1 -72 1505 1332 2096 142 6 12 chr12 34740684 34741029 -109541460 + MER2 DNA MER2_type 1 343 -1 364 300 57 21 chr12 34741134 34741274 -109541215 + L3 LINE CR1 579 723 -854 734 156 78 7 chr12 34741637 34741791 -109540698 - MER96B DNA MER1_type? -252 165 1 832 310 142 2 chr12 34741849 34742243 -109540246 + L3 LINE CR1 787 1235 -342 188 356 0 23 chr12 34742305 34742392 -109540097 + L3 LINE CR1 1492 1576 -1 1978 168 0 0 chr12 34742627 34742930 -109539559 - AluSx SINE Alu -9 303 1 1512 191 41 31 chr12 34743322 34743616 -109538873 - AluJb SINE Alu -15 297 1 710 331 105 23 chr12 34743923 34744241 -109538248 - L2 LINE L2 0 3313 2948 2223 218 55 2 chr12 34744241 34744754 -109537735 + MLT1F LTR MaLR 1 540 -2 710 331 105 23 chr12 34744754 34744873 -109537616 - L2 LINE L2 -365 2948 2840 2071 138 0 0 chr12 34745039 34745329 -109537160 + AluSx SINE Alu 4 293 -19 2290 76 34 3 chr12 34745598 34745889 -109536600 - AluSp SINE Alu -13 300 1 1092 196 53 65 chr12 34747756 34747976 -109534513 + Charlie1a DNA MER1_type 1 217 -2544 2084 113 10 14 chr12 34747976 34748267 -109534222 - AluSx SINE Alu -22 290 1 1092 196 53 65 chr12 34748267 34748367 -109534122 + Charlie1a DNA MER1_type 217 317 -1138 32 26 0 0 chr12 34748715 34748754 -109533735 + AT_rich Low_complexity Low_complexity 1 39 0 1878 135 39 4 chr12 34748870 34749151 -109533338 - AluSx SINE Alu -21 291 1 1813 179 61 5 chr12 34749156 34749547 -109532942 + Charlie1a DNA MER1_type 330 742 -713 326 204 0 0 chr12 34749547 34749601 -109532888 - MIR SINE MIR -190 72 19 835 110 61 49 chr12 34750124 34750288 -109532201 + MSTB1 LTR MaLR 1 166 -266 260 331 0 8 chr12 34750356 34750483 -109532006 - L1MC4a LINE L1 -1898 5910 5785 2422 73 0 0 chr12 34750516 34750816 -109531673 - AluY SINE Alu -11 300 1 1961 157 0 3 chr12 34751149 34751435 -109531054 + AluSx SINE Alu 8 292 -20 608 253 26 32 chr12 34752380 34752469 -109530020 + MIR SINE MIR 15 103 -159 2053 150 38 3 chr12 34752469 34752816 -109529673 - MER46B DNA MER2_type 0 236 3 608 253 26 32 chr12 34752816 34752916 -109529573 + MIR SINE MIR 103 203 -59 196 171 0 0 chr12 34753742 34753783 -109528706 - L2 LINE L2 0 3313 3273 2064 105 170 14 chr12 34754111 34754288 -109528201 - MSTA LTR MaLR 0 428 280 477 50 0 0 chr12 34754288 34754348 -109528141 + (GA)n Simple_repeat Simple_repeat 2 61 0 2064 105 170 14 chr12 34754348 34754540 -109527949 - MSTA LTR MaLR -148 280 1 2486 128 30 58 chr12 34755048 34755548 -109526941 + LTR19A LTR ERV1 1 486 0 2380 179 15 58 chr12 34755580 34756127 -109526362 + LTR9 LTR ERV1 1 523 -89 1113 109 6 0 chr12 34756131 34756287 -109526202 - AluSg/x SINE Alu 0 312 156 338 243 19 19 chr12 34759072 34759175 -109523314 + LTR33A LTR ERVL 418 520 -3 * 719 224 44 62 chr12 34759174 34759714 -109522775 - MER67C LTR ERV1 0 543 59 1957 126 39 11 chr12 34760027 34760312 -109522177 - AluSx SINE Alu -19 293 1 194 146 0 24 chr12 34761766 34761807 -109520682 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 259 256 33 58 chr12 34762232 34762353 -109520136 - LTR16C LTR ERVL 0 491 374 1652 183 65 14 chr12 34762354 34762770 -109519719 - LTR23 LTR ERV1 0 437 1 369 279 119 20 chr12 34762770 34762971 -109519518 - LTR16C LTR ERVL -120 371 151 34 24 0 0 chr12 34763755 34763796 -109518693 + AT_rich Low_complexity Low_complexity 1 41 0 187 271 14 29 chr12 34764669 34764739 -109517750 + MIR3 SINE MIR 126 194 -14 21 0 0 0 chr12 34764937 34764958 -109517531 + AT_rich Low_complexity Low_complexity 1 21 0 225 315 11 11 chr12 34765789 34765878 -109516611 - MIR SINE MIR -11 251 163 27 0 0 0 chr12 34767697 34767724 -109514765 + AT_rich Low_complexity Low_complexity 1 27 0 623 274 82 35 chr12 34767724 34767979 -109514510 - L2 LINE L2 -43 3270 3004 240 246 112 82 chr12 34768082 34768216 -109514273 - MIR3 SINE MIR -68 140 3 181 286 40 87 chr12 34768421 34768547 -109513942 - L2 LINE L2 -4 3309 3190 4057 25 0 0 chr12 34769904 34770377 -109512112 + L1PA3 LINE L1 5683 6155 0 1708 115 0 0 chr12 34770675 34770919 -109511570 + L1PB1 LINE L1 5907 6150 -1 180 324 14 0 chr12 34771362 34771433 -109511056 + L2 LINE L2 2373 2444 -870 857 244 105 55 chr12 34771453 34771646 -109510843 + MLT1H LTR MaLR 1 183 -366 987 139 51 74 chr12 34771646 34771862 -109510627 - MER20 DNA MER1_type -4 215 5 857 244 105 55 chr12 34771862 34771996 -109510493 + MLT1H LTR MaLR 183 387 -162 790 256 34 28 chr12 34772272 34772666 -109509823 - L1M4 LINE L1 -1467 4679 4280 2239 109 0 3 chr12 34772666 34772968 -109509521 - AluSc SINE Alu -8 301 1 790 256 34 28 chr12 34772968 34773045 -109509444 - L1M4 LINE L1 -1866 4280 4205 6643 140 23 19 chr12 34773408 34774084 -109508405 - L1MA5 LINE L1 0 6300 5628 2231 99 0 16 chr12 34774084 34774388 -109508101 - AluSx SINE Alu -13 299 1 6643 140 23 19 chr12 34774388 34774569 -109507920 - L1MA5 LINE L1 -672 5628 5449 2234 110 10 0 chr12 34774569 34774868 -109507621 - AluSx SINE Alu -10 302 1 6643 140 23 19 chr12 34774868 34776233 -109506256 - L1MA5 LINE L1 -851 5449 4066 623 256 22 33 chr12 34776279 34776459 -109506030 + MER5B DNA MER1_type 1 178 0 2008 147 139 16 chr12 34777798 34778179 -109504310 - MSTA LTR MaLR 0 428 1 497 274 12 90 chr12 34779385 34779640 -109502849 + MER102b DNA MER1_type 103 337 -4 253 250 26 26 chr12 34779904 34779980 -109502509 + CT-rich Low_complexity Low_complexity 2 77 0 5277 154 22 23 chr12 34780142 34781598 -109500891 - L1MA8 LINE L1 -1 6290 4827 5449 172 20 14 chr12 34781822 34783007 -109499482 - L1 LINE L1 -1136 5010 3818 763 302 64 33 chr12 34783155 34783347 -109499142 - L2 LINE L2 -589 2725 2540 2126 133 12 0 chr12 34783347 34783678 -109498811 + L1PA16 LINE L1 5828 6162 -4 763 302 64 33 chr12 34783678 34783905 -109498584 - L2 LINE L2 -774 2540 2293 889 202 6 0 chr12 34783911 34784079 -109498410 - MER45A DNA AcHobo 0 178 10 345 288 0 0 chr12 34784095 34784175 -109498314 - L2 LINE L2 -1031 2283 2204 3956 134 13 3 chr12 34784433 34785061 -109497428 + MER41B LTR ERV1 2 635 0 13545 28 1 2 chr12 34785396 34787795 -109494694 + L1PA4 LINE L1 3757 6155 0 305 303 148 49 chr12 34788034 34788298 -109494191 - L2 LINE L2 -411 2903 2614 2338 107 30 35 chr12 34788316 34788682 -109493807 + THE1B LTR MaLR 1 364 0 11594 98 5 4 chr12 34788682 34790261 -109492228 + THE1B-int LTR MaLR 1 1580 0 2345 107 33 33 chr12 34790261 34790625 -109491864 + THE1B LTR MaLR 1 364 0 4813 147 36 8 chr12 34790759 34791562 -109490927 + LTR1B LTR ERV1 1 826 0 3101 164 54 51 chr12 34791848 34792572 -109489917 + LTR8A LTR ERV1 1 726 -1 27 0 0 0 chr12 34792828 34792855 -109489634 + AT_rich Low_complexity Low_complexity 1 27 0 1313 217 40 7 chr12 34792925 34793202 -109489287 - MER61D LTR ERV1 0 501 216 596 218 35 23 chr12 34793273 34793447 -109489042 - LTR28 LTR ERV1 -844 176 1 830 179 6 0 chr12 34793690 34793858 -109488631 + CT-rich Low_complexity Low_complexity 4 172 0 6579 83 11 10 chr12 34794296 34795785 -109486704 - SVA Other Other -839 1381 8 22 35 0 0 chr12 34795893 34795922 -109486567 + AT_rich Low_complexity Low_complexity 1 29 0 221 311 95 34 chr12 34796226 34796374 -109486115 + MIR3 SINE MIR 43 199 -9 2346 145 51 10 chr12 34796595 34797010 -109485479 + MSTB1 LTR MaLR 1 432 0 431 291 118 42 chr12 34797204 34797517 -109484972 + MLT1J2 LTR MaLR 92 428 -22 892 216 19 29 chr12 34797598 34797933 -109484556 - L1ME LINE L1 -651 5515 5186 2958 158 26 89 chr12 34798046 34798788 -109483701 + LTR34 LTR ERV1 1 695 -4 243 93 0 23 chr12 34798792 34798835 -109483654 - L1ME LINE L1 -976 5170 5129 355 160 0 13 chr12 34798904 34798979 -109483510 + L1MA10 LINE L1 6254 6327 -7 326 255 128 10 chr12 34799846 34799948 -109482541 - MIR SINE MIR -78 184 71 602 246 82 100 chr12 34800110 34800500 -109481989 + MLT1J2 LTR MaLR 67 449 -1 2129 129 3 0 chr12 34800765 34801060 -109481429 + AluSx SINE Alu 1 296 -16 473 247 98 35 chr12 34801128 34801328 -109481161 + MIR SINE MIR 3 214 -48 1056 296 84 52 chr12 34801329 34801999 -109480490 + MER21B LTR ERV1 24 714 -149 312 217 14 0 chr12 34802000 34802069 -109480420 + MIR SINE MIR 191 260 -2 203 359 0 0 chr12 34802184 34802248 -109480241 - MIR SINE MIR -105 103 40 238 216 40 14 chr12 34802757 34802831 -109479658 + MLT1K LTR MaLR 509 584 -4 214 204 0 20 chr12 34803640 34803689 -109478800 + CT-rich Low_complexity Low_complexity 2 49 0 5795 115 29 9 chr12 34803857 34804485 -109478004 - L1PBa LINE L1 -4115 2748 2089 2278 124 7 0 chr12 34804485 34804791 -109477698 - AluSg SINE Alu -2 308 1 5795 115 29 9 chr12 34804791 34805200 -109477289 - L1PBa LINE L1 -4774 2089 1690 4328 119 178 79 chr12 34805202 34806616 -109475873 - pTR5 LTR ERV1 -11 2427 743 1677 209 66 2 chr12 34806616 34807461 -109475028 - L1PBa LINE L1 -5169 1694 652 468 227 81 32 chr12 34807458 34807643 -109474846 - L1PBa LINE L1 -6664 199 6 * 25 90 0 0 chr12 34808471 34808538 -109473951 + AT_rich Low_complexity Low_complexity 1 67 0 405 290 116 14 chr12 34808745 34808883 -109473606 - MIR SINE MIR -108 154 3 26 0 0 0 chr12 34809577 34809603 -109472886 + AT_rich Low_complexity Low_complexity 1 26 0 2008 222 12 37 chr12 34810631 34811149 -109471340 - MLT1D LTR MaLR 0 505 1 768 236 18 71 chr12 34811149 34811429 -109471060 - MLT1D-int LTR MaLR 0 1371 1107 385 205 12 0 chr12 34811502 34811585 -109470904 - MLT1D-int LTR MaLR -1270 101 18 1364 224 147 19 chr12 34811612 34812151 -109470338 - L1ME2 LINE L1 -174 5990 5383 438 299 65 18 chr12 34812169 34812510 -109469979 - L1MDa LINE L1 -4796 1419 1063 2065 139 7 0 chr12 34812542 34812845 -109469644 - AluSx SINE Alu -5 307 3 687 288 130 38 chr12 34812869 34813692 -109468797 - L1MDa LINE L1 -5453 943 45 939 205 16 16 chr12 34813823 34814067 -109468422 + L1 LINE L1 4745 4988 -1158 390 292 105 69 chr12 34814285 34814648 -109467841 + L3b LINE CR1 1107 1482 -101 2235 130 0 23 chr12 34816583 34816928 -109465561 - MER1B DNA MER1_type 0 337 1 392 301 81 0 chr12 34817891 34818027 -109464462 + MIR SINE MIR 72 218 -44 772 273 64 16 chr12 34818798 34819047 -109463442 - MIR SINE MIR 0 262 2 210 331 39 23 chr12 34819618 34819748 -109462741 + L2 LINE L2 1775 1906 -1408 183 269 231 9 chr12 34820545 34820653 -109461836 - L2 LINE L2 0 3313 3182 1581 124 0 0 chr12 34820947 34821156 -109461333 + AluSx SINE Alu 1 209 -103 2280 137 86 2 chr12 34821226 34821621 -109460868 + MSTA LTR MaLR 1 428 0 256 324 0 14 chr12 34822417 34822491 -109459998 + L2 LINE L2 3198 3270 -2 397 169 13 26 chr12 34823107 34823184 -109459305 + L2 LINE L2 3225 3300 -13 225 208 0 125 chr12 34824048 34824120 -109458369 - MIR SINE MIR -32 230 168 701 192 0 0 chr12 34824123 34824253 -109458236 + MSTC LTR MaLR 251 380 -48 811 287 46 8 chr12 34824278 34824515 -109457974 - MIR SINE MIR 0 262 17 366 297 70 79 chr12 34825310 34825640 -109456849 + L1M2 LINE L1 669 995 -5854 25 0 0 0 chr12 34826267 34826292 -109456197 + AT_rich Low_complexity Low_complexity 1 25 0 743 318 139 3 chr12 34826820 34827144 -109455345 + L2 LINE L2 2941 3308 -5 1879 128 42 33 chr12 34827465 34827730 -109454759 - MER1B DNA MER1_type -2373 339 69 9040 38 2 2 chr12 34827730 34828801 -109453688 + MER11C LTR ERVK 1 1071 0 1879 128 42 33 chr12 34828801 34828871 -109453618 - MER1B DNA MER1_type -2643 69 1 23 54 0 0 chr12 34829616 34829653 -109452836 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr12 34830546 34830570 -109451919 + AT_rich Low_complexity Low_complexity 1 24 0 2312 88 0 0 chr12 34830657 34830952 -109451537 - AluY SINE Alu -16 295 1 2025 103 4 4 chr12 34830959 34831231 -109451258 - AluSp SINE Alu -15 298 27 233 236 87 63 chr12 34833227 34833354 -109449135 + L1MEd LINE L1 89 218 -5987 4282 202 45 28 chr12 34833700 34834791 -109447698 + L1MC3 LINE L1 6677 7785 0 330 256 62 6 chr12 34834796 34834972 -109447517 + L1MEd LINE L1 1304 1489 -4907 325 355 47 0 chr12 34835009 34835181 -109447308 + L1M4 LINE L1 3684 3863 -2283 1632 154 12 77 chr12 34835181 34835505 -109446984 - AluSg SINE Alu -7 303 1 565 291 13 0 chr12 34835634 34835785 -109446704 + L1M2 LINE L1 331 483 -6366 9170 215 32 18 chr12 34836063 34839336 -109443153 + L1M2 LINE L1 710 4021 -2827 2448 193 18 2 chr12 34839349 34839856 -109442633 + L1M2 LINE L1 4410 4924 -1924 647 128 69 0 chr12 34839856 34839958 -109442531 - AluSc SINE Alu -13 296 188 3594 70 13 64 chr12 34839993 34840540 -109441949 - L1PA7 LINE L1 -13 6141 5623 454 78 0 0 chr12 34840550 34840614 -109441875 + L1PA11 LINE L1 5669 5732 -436 * 1336 90 71 0 chr12 34840613 34840825 -109441664 + L1PBa LINE L1 2187 2413 -4450 2659 67 28 8 chr12 34840931 34841289 -109441200 + L1PA11 LINE L1 5810 6174 0 4353 117 33 37 chr12 34841289 34842098 -109440391 + Tigger1 DNA MER2_type 1467 2272 -146 13257 180 36 6 chr12 34842113 34847485 -109435004 - L1PB1 LINE L1 -3 6864 1339 5479 93 109 88 chr12 34847533 34849036 -109433453 + pTR5 LTR ERV1 743 2438 0 4746 178 90 6 chr12 34849042 34850080 -109432409 - L1PB1 LINE L1 -5723 1140 16 927 170 0 0 chr12 34850128 34850287 -109432202 + Tigger1 DNA MER2_type 2260 2418 0 304 271 107 0 chr12 34850312 34850489 -109432000 - L1M4c LINE L1 -4764 1620 1425 3340 70 2 0 chr12 34850511 34850941 -109431548 - L1PA10 LINE L1 -9 6159 5729 1541 110 22 0 chr12 34851811 34852038 -109430451 - L1PA15 LINE L1 -9 6156 5925 2002 128 7 0 chr12 34852066 34852375 -109430114 + AluSx SINE Alu 1 311 0 1244 126 61 58 chr12 34852626 34852807 -109429682 - L1MA8 LINE L1 -2 6289 6110 2183 123 0 0 chr12 34852807 34853092 -109429397 + AluSx SINE Alu 1 285 -27 504 0 0 0 chr12 34853097 34853153 -109429336 + (TA)n Simple_repeat Simple_repeat 1 56 0 1244 126 61 58 chr12 34853153 34853242 -109429247 - L1MA8 LINE L1 -184 6107 6012 426 277 45 45 chr12 34853383 34853585 -109428904 + L1ME4a LINE L1 5715 5916 -205 25 0 0 0 chr12 34853719 34853744 -109428745 + AT_rich Low_complexity Low_complexity 1 25 0 180 345 36 12 chr12 34854327 34854411 -109428078 - MIR SINE MIR -140 122 37 234 174 0 22 chr12 34855114 34855160 -109427329 - L3 LINE CR1 -9 1568 1524 1560 203 31 17 chr12 34855403 34855763 -109426726 + MLT1A1 LTR MaLR 1 365 0 2097 137 3 10 chr12 34855901 34856214 -109426275 + AluSx SINE Alu 1 311 -1 3004 183 17 12 chr12 34856287 34856872 -109425617 + Tigger7 DNA MER2_type 1 588 -1899 722 202 125 0 chr12 34857478 34857646 -109424843 + MER5A DNA MER1_type 1 189 0 694 315 97 39 chr12 34857647 34858060 -109424429 + LTR16A LTR ERVL 1 437 -13 22 0 0 0 chr12 34858726 34858748 -109423741 + AT_rich Low_complexity Low_complexity 1 22 0 1775 79 117 0 chr12 34859030 34859296 -109423193 - L1PA13 LINE L1 -4 6159 5863 239 122 0 24 chr12 34859510 34859551 -109422938 - L2 LINE L2 -19 3253 3214 21 36 0 0 chr12 34859727 34859755 -109422734 + AT_rich Low_complexity Low_complexity 1 28 0 2415 129 60 21 chr12 34860219 34860652 -109421837 - LTR7 LTR ERV1 0 450 1 10336 93 2 3 chr12 34860652 34862158 -109420331 - HERVH LTR ERV1 0 7713 6209 2985 128 14 9 chr12 34862151 34862789 -109419700 - HERVH LTR ERV1 -6767 946 1 * 2315 126 57 30 chr12 34862791 34863227 -109419262 - LTR7 LTR ERV1 -2 448 1 23 33 0 0 chr12 34863231 34863261 -109419228 + AT_rich Low_complexity Low_complexity 1 30 0 357 218 2 16 chr12 34863703 34863794 -109418695 + MLT1J2 LTR MaLR 72 160 -249 240 276 143 0 chr12 34863853 34863958 -109418531 + MLT1J2 LTR MaLR 256 375 -75 194 325 117 42 chr12 34864350 34864470 -109418019 - L2 LINE L2 -6 3266 3138 431 264 25 0 chr12 34865212 34865333 -109417156 + MER94 DNA DNA 7 130 -4 2229 137 7 41 chr12 34865889 34866305 -109416184 - L1MA6 LINE L1 -4 6296 5895 2047 124 40 27 chr12 34867566 34867936 -109414553 - THE1C LTR MaLR 0 375 1 377 283 103 14 chr12 34867981 34868126 -109414363 - MIR SINE MIR 0 262 105 215 217 83 0 chr12 34869154 34869214 -109413275 + L2 LINE L2 3208 3272 0 262 324 65 0 chr12 34869414 34869522 -109412967 - MIR SINE MIR -75 187 73 5478 119 35 5 chr12 34869698 34870374 -109412115 + L1PB1 LINE L1 5087 5807 -344 192 77 0 0 chr12 34870374 34870400 -109412089 + (TA)n Simple_repeat Simple_repeat 2 27 0 5478 119 35 5 chr12 34870400 34870748 -109411741 + L1PB1 LINE L1 5807 6143 -8 35 54 0 0 chr12 34870864 34870920 -109411569 + AT_rich Low_complexity Low_complexity 1 56 0 370 310 39 8 chr12 34870944 34871073 -109411416 - MIR SINE MIR -71 191 59 407 200 11 22 chr12 34871414 34871504 -109410985 + MER21B LTR ERV1 1 89 -774 2057 243 104 20 chr12 34871530 34872192 -109410297 + MER21B LTR ERV1 21 738 -125 2183 141 0 0 chr12 34872893 34873205 -109409284 + AluSx SINE Alu 1 312 0 41209 51 2 6 chr12 34874652 34880829 -109401660 - L1PA6 LINE L1 -2 6152 2 9056 89 5 0 chr12 34880829 34882170 -109400319 + L1P LINE L1 1832 3178 -2968 229 287 195 0 chr12 34882212 34882299 -109400190 + L2 LINE L2 3121 3224 -48 21 36 0 0 chr12 34883362 34883390 -109399099 + AT_rich Low_complexity Low_complexity 1 28 0 36 40 0 0 chr12 34883842 34883892 -109398597 + AT_rich Low_complexity Low_complexity 1 50 0 319 305 80 32 chr12 34884187 34884436 -109398053 - MLT1K LTR MaLR 0 588 328 1083 190 55 3 chr12 34884595 34884884 -109397605 - MLT1B LTR MaLR 0 390 8 2126 120 7 0 chr12 34885206 34885498 -109396991 - AluSq SINE Alu -19 294 1 306 286 187 6 chr12 34886033 34886215 -109396274 + L1M4 LINE L1 2721 2935 -3211 482 241 26 26 chr12 34887805 34887921 -109394568 + L2 LINE L2 3197 3312 -1 435 351 78 38 chr12 34887976 34888346 -109394143 + L2 LINE L2 2593 2977 -337 236 246 0 0 chr12 34889138 34889195 -109393294 + MLT1L LTR MaLR 16 72 -543 2024 150 0 3 chr12 34890920 34891233 -109391256 - AluSq SINE Alu -1 312 1 915 277 153 22 chr12 34891897 34892175 -109390314 + L1MC4 LINE L1 7297 7537 -505 525 32 0 0 chr12 34892175 34892238 -109390251 + (CCAA)n Simple_repeat Simple_repeat 2 64 0 915 277 153 22 chr12 34892238 34892329 -109390160 + L1MC4 LINE L1 7537 7615 -427 403 84 0 28 chr12 34892329 34892400 -109390089 + (TG)n Simple_repeat Simple_repeat 2 70 0 915 277 153 22 chr12 34892400 34892675 -109389814 + L1MC4 LINE L1 7615 8027 -15 3994 222 26 1 chr12 34892782 34893741 -109388748 - L1MCa LINE L1 -3048 3378 2396 2227 147 25 13 chr12 34893743 34894153 -109388336 - L1MCa LINE L1 -4332 2094 1566 3290 92 15 0 chr12 34894153 34894610 -109387879 + L1PA13 LINE L1 5696 6159 -4 2227 147 25 13 chr12 34894610 34894634 -109387855 - L1MCa LINE L1 -4860 1566 1544 337 214 95 24 chr12 34894778 34894904 -109387585 + L1ME LINE L1 5636 5770 -351 699 254 75 44 chr12 34895556 34895808 -109386681 - MIR SINE MIR -1 261 2 246 306 97 45 chr12 34896184 34896318 -109386171 - L2 LINE L2 -4 3268 3128 359 363 23 35 chr12 34896491 34896750 -109385739 - L2 LINE L2 -212 3060 2805 21 0 0 0 chr12 34897025 34897046 -109385443 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 65 57 chr12 34898147 34898271 -109384218 - L2 LINE L2 -344 2928 2804 258 319 0 0 chr12 34898938 34899007 -109383482 - L2 LINE L2 -218 3054 2986 333 238 35 91 chr12 34899730 34899762 -109382727 - MIR SINE MIR -10 252 220 1038 157 55 111 chr12 34899762 34900105 -109382384 + MER33 DNA MER1_type 1 324 0 333 238 35 91 chr12 34900105 34900215 -109382274 - MIR SINE MIR -42 220 118 2286 90 3 0 chr12 34902677 34902965 -109379524 + AluSg SINE Alu 1 289 -21 193 370 160 8 chr12 34902986 34903105 -109379384 + L2 LINE L2 3136 3272 0 321 333 48 61 chr12 34903921 34904300 -109378189 - L2 LINE L2 -3 3310 2937 2509 84 0 0 chr12 34905509 34905819 -109376670 - AluSx SINE Alu -2 310 1 26 30 0 0 chr12 34905916 34905949 -109376540 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr12 34905998 34906037 -109376452 + AT_rich Low_complexity Low_complexity 1 39 0 2570 125 3 3 chr12 34906037 34906422 -109376067 - LTR9B LTR ERV1 -84 560 176 1668 167 32 3 chr12 34907480 34907762 -109374727 - AluSx SINE Alu -22 290 1 261 328 0 0 chr12 34909418 34909485 -109373004 - MIR SINE MIR -176 86 20 184 286 12 95 chr12 34909488 34909572 -109372917 - MIR SINE MIR -93 115 39 26 0 0 0 chr12 34909648 34909674 -109372815 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr12 34910008 34910043 -109372446 + AT_rich Low_complexity Low_complexity 1 35 0 422 314 101 29 chr12 34910047 34910423 -109372066 + L1MC4a LINE L1 5513 5915 -206 1648 132 0 0 chr12 34910751 34910978 -109371511 - AluJo SINE Alu -15 297 71 388 253 11 0 chr12 34911016 34911111 -109371378 - L1MC4 LINE L1 -600 7442 7347 * 652 229 221 12 chr12 34911107 34911356 -109371133 + L1MC4 LINE L1 7453 7753 -289 603 284 85 49 chr12 34911373 34911820 -109370669 - HAL1b LINE L1 -834 514 52 1842 178 37 8 chr12 34913498 34913853 -109368636 - MLT1A1 LTR MaLR 0 365 1 42882 51 0 1 chr12 34914145 34920290 -109362199 - L1PA4 LINE L1 -5 6150 13 956 106 47 0 chr12 34920288 34920458 -109362031 - L1PA8A LINE L1 -700 5431 5254 * 547 230 138 13 chr12 34920864 34921016 -109361473 - MIR SINE MIR -78 184 14 572 307 80 29 chr12 34921491 34921729 -109360760 + MIR SINE MIR 13 262 0 24 32 0 0 chr12 34922170 34922201 -109360288 + AT_rich Low_complexity Low_complexity 1 31 0 1940 260 60 54 chr12 34922357 34923460 -109359029 + L1ME3A LINE L1 4888 5983 -179 3148 127 51 6 chr12 34923460 34923949 -109358540 - MER9 LTR ERVK 0 511 1 1940 260 60 54 chr12 34923949 34924009 -109358480 + L1ME3A LINE L1 5983 6041 -121 3196 138 10 6 chr12 34924009 34924518 -109357971 - MER9 LTR ERVK 0 511 1 1940 260 60 54 chr12 34924518 34924618 -109357871 + L1ME3A LINE L1 6041 6125 -37 4241 85 21 11 chr12 34925283 34926304 -109356185 + MER11A LTR ERVK 1 1266 0 545 329 74 7 chr12 34927296 34927538 -109354951 + MIR SINE MIR 2 257 -5 375 301 106 20 chr12 34927533 34927732 -109354757 + MIR SINE MIR 42 257 -5 * 370 333 46 0 chr12 34927896 34928049 -109354440 + MIR SINE MIR 77 236 -26 950 18 0 0 chr12 34928087 34928197 -109354292 - L1PA3 LINE L1 0 6155 6046 2474 164 19 19 chr12 34929141 34929377 -109353112 + MSTB LTR MaLR 1 239 -187 1914 159 41 14 chr12 34929377 34929741 -109352748 + THE1C LTR MaLR 1 374 -1 2474 164 19 19 chr12 34929741 34929930 -109352559 + MSTB LTR MaLR 238 426 0 1952 87 0 8 chr12 34930492 34930746 -109351743 + AluSx SINE Alu 61 312 0 197 299 126 23 chr12 34930882 34930969 -109351520 + L2 LINE L2 3161 3256 -16 1570 226 7 0 chr12 34930980 34931325 -109351164 + AluJb SINE Alu 1 347 0 189 0 0 0 chr12 34931325 34931346 -109351143 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 285 231 8 116 chr12 34931437 34931558 -109350931 - MER20 DNA MER1_type 0 219 112 292 280 115 27 chr12 34931756 34931915 -109350574 + MIR SINE MIR 21 188 -70 358 276 21 97 chr12 34932895 34933040 -109349449 - MER5B DNA MER1_type -24 154 21 325 260 133 44 chr12 34933645 34933826 -109348663 - L2 LINE L2 0 3272 3076 1700 185 0 7 chr12 34934326 34934613 -109347876 + AluSx SINE Alu 1 285 -27 189 268 118 39 chr12 34935423 34935550 -109346939 - L2 LINE L2 -947 2367 2231 28407 97 16 30 chr12 34936056 34938676 -109343813 + L1PA7 LINE L1 706 3363 -3106 255 31 0 0 chr12 34938676 34938708 -109343781 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 28407 97 16 30 chr12 34938708 34938838 -109343651 + L1PA7 LINE L1 3363 3493 -2976 387 0 0 0 chr12 34938838 34938881 -109343608 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 28407 97 16 30 chr12 34938881 34938893 -109343596 + L1PA7 LINE L1 3493 3504 -2965 4786 32 0 0 chr12 34938893 34939457 -109343032 - L1PA3 LINE L1 -3 6152 5589 28407 97 16 30 chr12 34939457 34942591 -109339898 + L1PA7 LINE L1 3504 6451 -18 549 246 0 0 chr12 34942612 34942738 -109339751 + L1M4 LINE L1 3445 3570 -2576 21 0 0 0 chr12 34942765 34942786 -109339703 + AT_rich Low_complexity Low_complexity 1 21 0 1023 183 11 0 chr12 34943279 34943454 -109339035 - AluJb SINE Alu -7 305 129 409 235 17 59 chr12 34943863 34943982 -109338507 - L2 LINE L2 -7 3306 3193 345 274 8 34 chr12 34944951 34945068 -109337421 - HsTC2 DNA Tc2 -1781 117 4 298 316 10 10 chr12 34945375 34945473 -109337016 - LTR67 LTR ERVL -368 189 92 325 307 79 0 chr12 34946440 34946567 -109335922 + MIR SINE MIR 45 181 -81 815 233 62 0 chr12 34947019 34947212 -109335277 + MIR SINE MIR 30 234 -28 596 223 66 0 chr12 34947403 34947622 -109334867 - FLAM_C SINE Alu 0 227 1 6580 27 3 0 chr12 34947711 34948482 -109334007 - L1PA3 LINE L1 -4 6151 5379 1876 164 0 3 chr12 34949106 34949398 -109333091 + AluJb SINE Alu 1 291 -21 475 317 112 41 chr12 34949401 34949839 -109332650 - MLT1K LTR MaLR -3 585 117 483 337 36 14 chr12 34949962 34950183 -109332306 - MIR SINE MIR -4 258 35 1078 171 0 0 chr12 34950183 34950347 -109332142 - AluJo/FRAM SINE Alu -15 297 134 2242 102 0 34 chr12 34950349 34950671 -109331818 - AluY SINE Alu 0 311 1 216 97 0 0 chr12 34950699 34950730 -109331759 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 400 329 46 0 chr12 34951531 34951747 -109330742 - MER112 DNA MER1_type -32 228 3 2088 89 31 7 chr12 34952533 34952824 -109329665 - AluSp SINE Alu -15 298 1 597 338 77 54 chr12 34952839 34953404 -109329085 - L2 LINE L2 -282 3031 2450 1395 66 5 30 chr12 34953534 34953732 -109328757 + AluY SINE Alu 104 296 -15 328 350 57 16 chr12 34953734 34953980 -109328509 - L1MCb LINE L1 -1404 5160 4905 21 57 0 0 chr12 34956500 34956535 -109325954 + AT_rich Low_complexity Low_complexity 1 35 0 230 294 0 0 chr12 34958648 34958733 -109323756 + L1MC4 LINE L1 6618 6702 -1340 276 207 17 0 chr12 34959193 34959251 -109323238 - MER103 DNA DNA -95 71 13 558 358 73 55 chr12 34959431 34959976 -109322513 - LTR67 LTR ERVL 0 557 3 572 332 61 16 chr12 34959992 34960305 -109322184 - MLT1L LTR MaLR -92 523 197 5616 236 54 9 chr12 34960531 34962231 -109320258 - L1MCb LINE L1 -1916 4648 2872 683 176 0 0 chr12 34962235 34962343 -109320146 - FLAM_C SINE Alu -35 108 1 4169 209 108 56 chr12 34962343 34962638 -109319851 - L1MCb LINE L1 -3818 2746 2468 1666 111 0 8 chr12 34962638 34962873 -109319616 - AluSc SINE Alu -6 303 71 5044 28 0 44 chr12 34962878 34963517 -109318972 - L1PA4 LINE L1 -8 6147 5537 534 83 0 0 chr12 34963517 34963589 -109318900 - AluSc SINE Alu -237 72 1 4169 209 108 56 chr12 34963589 34965084 -109317405 - L1MCb LINE L1 -4098 2466 777 21 36 0 0 chr12 34965094 34965122 -109317367 + AT_rich Low_complexity Low_complexity 1 28 0 861 206 33 5 chr12 34965134 34965318 -109317171 - L1MCb LINE L1 -6221 343 155 1950 193 71 106 chr12 34966104 34966808 -109315681 - MER61E LTR ERV1 -4 750 3 1836 225 113 19 chr12 34966808 34967074 -109315415 - L1MD3 LINE L1 -31 7964 7724 1946 153 0 13 chr12 34967074 34967375 -109315114 - AluSx SINE Alu -15 297 1 1836 225 113 19 chr12 34967375 34967677 -109314812 - L1MD3 LINE L1 -271 7724 7343 535 281 47 8 chr12 34968848 34968976 -109313513 - L2 LINE L2 -4 3268 3136 261 0 0 0 chr12 34969002 34969031 -109313458 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2487 182 66 71 chr12 34969031 34969727 -109312762 + LTR34 LTR ERV1 8 695 -4 613 279 60 0 chr12 34969744 34969945 -109312544 - L2 LINE L2 -174 3139 2927 539 294 172 11 chr12 34969935 34970214 -109312275 - L2 LINE L2 -529 2785 2462 * 584 60 24 0 chr12 34971848 34971931 -109310558 - L1PA7 LINE L1 0 6154 6070 707 66 38 0 chr12 34971940 34972046 -109310443 - L1P LINE L1 -789 5357 5248 234 150 0 0 chr12 34972280 34972320 -109310169 + (T)n Simple_repeat Simple_repeat 1 40 0 995 196 12 0 chr12 34972873 34973041 -109309448 + MER5A DNA MER1_type 2 171 -18 497 219 123 0 chr12 34973166 34973280 -109309209 + FLAM_C SINE Alu 1 128 -5 2288 145 5 3 chr12 34973336 34973709 -109308780 + L1PA16 LINE L1 5792 6165 -1 358 304 74 19 chr12 34974748 34975005 -109307484 + L1MEc LINE L1 1709 1979 -4417 1846 234 43 28 chr12 34975052 34975518 -109306971 + MLT1D LTR MaLR 5 477 -28 295 73 0 0 chr12 34975559 34975600 -109306889 + MLT1D LTR MaLR 465 505 0 298 218 9 9 chr12 34975893 34976003 -109306486 + L1MEc LINE L1 2126 2235 -3980 * 714 306 102 23 chr12 34975971 34976530 -109305959 + L1MEc LINE L1 2504 3106 -3109 1159 295 63 10 chr12 34976546 34977149 -109305340 + L1MEc LINE L1 3184 3818 -2397 336 268 8 16 chr12 34977147 34977168 -109305321 - L1MA4A LINE L1 0 6303 6283 * 7975 181 34 30 chr12 34977168 34978149 -109304340 - L1PB4 LINE L1 -2 6154 5178 2152 178 41 24 chr12 34978149 34978524 -109303965 + MSTB LTR MaLR 3 370 -56 2032 119 7 10 chr12 34978524 34978834 -109303655 - AluSc SINE Alu 0 309 1 2040 122 3 14 chr12 34978834 34979130 -109303359 - AluSc SINE Alu -16 293 1 2152 178 41 24 chr12 34979130 34979170 -109303319 + MSTB LTR MaLR 369 426 0 7975 181 34 30 chr12 34979170 34980868 -109301621 - L1PB4 LINE L1 -978 5178 3460 * 28423 106 14 63 chr12 34980858 34985778 -109296711 - L1PA3 LINE L1 -257 6213 1565 4893 81 136 22 chr12 34985778 34986516 -109295973 + LTR12 LTR ERV1 1 822 -4 28423 106 14 63 chr12 34986516 34987716 -109294773 - L1PA3 LINE L1 -4905 1565 308 894 197 39 0 chr12 34987716 34987894 -109294595 - MLT2B3 LTR ERVL -369 185 1 2296 225 76 42 chr12 34987899 34988283 -109294206 + L1ME2 LINE L1 5185 5554 -610 2357 85 0 3 chr12 34988283 34988577 -109293912 - AluY SINE Alu -18 293 1 2296 225 76 42 chr12 34988577 34989086 -109293403 + L1ME2 LINE L1 5554 6093 -71 1968 160 9 6 chr12 34989765 34990231 -109292258 - MER44D DNA MER2_type -1 604 2 468 261 54 9 chr12 34990443 34990554 -109291935 + FLAM_A SINE Alu 1 116 -17 26 50 0 0 chr12 34991365 34991405 -109291084 + AT_rich Low_complexity Low_complexity 1 40 0 268 287 64 0 chr12 34991722 34991816 -109290673 - MIR3 SINE MIR -8 200 101 180 0 0 0 chr12 34992666 34992686 -109289803 + (T)n Simple_repeat Simple_repeat 1 20 0 295 215 0 0 chr12 34993369 34993434 -109289055 - L1MD3 LINE L1 -8 7987 7923 21 36 0 0 chr12 34993434 34993462 -109289027 + AT_rich Low_complexity Low_complexity 1 28 0 455 233 0 9 chr12 34993466 34993582 -109288907 - L1MC4 LINE L1 -177 7865 7751 2444 76 0 3 chr12 34993621 34993923 -109288566 + AluY SINE Alu 1 301 -10 420 289 71 83 chr12 34993984 34994379 -109288110 - L1 LINE L1 -3547 2599 2210 1996 104 3 17 chr12 34994418 34994707 -109287782 - THE1C LTR MaLR -90 285 1 2051 130 3 0 chr12 34994988 34995281 -109287208 - AluSx SINE Alu -18 294 1 236 182 0 130 chr12 34995292 34995369 -109287120 - HAL1b LINE L1 -614 734 668 230 336 34 57 chr12 34995493 34995931 -109286558 - HAL1b LINE L1 -865 483 56 207 0 0 0 chr12 34996343 34996366 -109286123 + (T)n Simple_repeat Simple_repeat 1 23 0 1998 89 0 4 chr12 34997013 34997271 -109285218 - AluSq SINE Alu -16 297 41 21 0 0 0 chr12 34997430 34997451 -109285038 + AT_rich Low_complexity Low_complexity 1 21 0 233 180 45 126 chr12 34997470 34997581 -109284908 + MIR SINE MIR 96 197 -65 1982 223 47 27 chr12 34998068 34998734 -109283755 + L1M3f LINE L1 728 1730 -4094 824 261 0 5 chr12 34998897 34999092 -109283397 + L1M3f LINE L1 2683 2876 -3452 6602 108 8 6 chr12 34999092 35000088 -109282401 - L1MA3 LINE L1 0 6305 5308 4143 210 42 19 chr12 35000088 35001175 -109281314 + L1M3f LINE L1 2857 3968 -2360 2422 39 4 0 chr12 35001503 35001784 -109280705 - AluY SINE Alu -26 285 4 180 111 0 0 chr12 35001884 35001911 -109280578 + (CA)n Simple_repeat Simple_repeat 2 28 0 325 282 154 48 chr12 35002190 35002520 -109279969 - L1M4 LINE L1 -759 5387 5023 20263 175 20 15 chr12 35002901 35008192 -109274297 - L1PA13 LINE L1 -4 6810 1404 4460 237 130 7 chr12 35008260 35009352 -109273137 - L1PA13 LINE L1 -5560 1227 2 416 281 84 76 chr12 35009823 35010190 -109272299 + LTR16B LTR ERVL 1 370 -94 195 42 0 0 chr12 35010242 35010266 -109272223 + (CA)n Simple_repeat Simple_repeat 1 24 0 4016 142 41 14 chr12 35010396 35011085 -109271404 + MER39 LTR ERV1 1 707 0 23 68 0 0 chr12 35011098 35011142 -109271347 + AT_rich Low_complexity Low_complexity 1 44 0 22 80 0 0 chr12 35011188 35011238 -109271251 + AT_rich Low_complexity Low_complexity 1 50 0 414 175 135 56 chr12 35011238 35011364 -109271125 - MER96B DNA MER1_type? -281 136 1 269 313 175 32 chr12 35011526 35011743 -109270746 + L2 LINE L2 2804 3051 -221 183 80 0 0 chr12 35012086 35012111 -109270378 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 268 226 0 0 chr12 35012976 35013029 -109269460 - MIR3 SINE MIR -6 202 150 43641 42 3 2 chr12 35013345 35019495 -109262994 + L1PA3 LINE L1 3 6155 0 1712 188 7 3 chr12 35020499 35020808 -109261681 - AluJb SINE Alu -2 310 1 28 29 0 0 chr12 35021186 35021221 -109261268 + AT_rich Low_complexity Low_complexity 1 35 0 630 319 89 5 chr12 35021913 35022126 -109260363 + L3 LINE CR1 1309 1539 -38 284 284 74 32 chr12 35022346 35022441 -109260048 + L2 LINE L2 3137 3235 -37 261 266 165 37 chr12 35022530 35022639 -109259850 - MIR SINE MIR -96 166 44 2504 157 19 5 chr12 35022742 35023162 -109259327 + MSTB LTR MaLR 1 426 0 831 303 79 39 chr12 35024358 35024800 -109257689 + MLT1G LTR MaLR 113 572 -18 869 184 85 72 chr12 35025583 35025806 -109256683 - MLT2D LTR ERVL -5 409 184 833 164 0 7 chr12 35025889 35026029 -109256460 + MLT1A1 LTR MaLR 227 365 0 1026 140 135 5 chr12 35026031 35026231 -109256258 + MSTA LTR MaLR 1 226 -202 1873 73 0 0 chr12 35026231 35026465 -109256024 - LTR12 LTR ERV1 -2 712 479 4728 124 80 19 chr12 35026465 35027241 -109255248 - LTR12 LTR ERV1 -3 823 1 844 135 25 55 chr12 35027242 35027405 -109255084 + MSTA LTR MaLR 207 364 0 664 245 123 55 chr12 35027460 35028328 -109254161 - HAL1 LINE L1 -114 2393 1390 249 105 0 0 chr12 35028333 35028371 -109254118 + MER4D LTR ERV1 284 321 -582 7701 21 1 0 chr12 35028371 35029840 -109252649 - L1PA3 LINE L1 0 6155 4684 11287 31 20 0 chr12 35029841 35031209 -109251280 + L1PA3 LINE L1 3283 4677 -1469 2444 170 50 61 chr12 35031210 35031787 -109250702 + LTR49 LTR ERV1 25 595 0 1103 276 75 63 chr12 35031904 35032076 -109250413 - HAL1 LINE L1 -1254 1253 1085 2260 102 3 0 chr12 35032076 35032369 -109250120 - AluSp SINE Alu -18 295 2 1103 276 75 63 chr12 35032369 35032867 -109249622 - HAL1 LINE L1 -1422 1085 575 5109 142 161 20 chr12 35033725 35034684 -109247805 - Tigger3b DNA MER2_type -1810 1218 92 4533 64 87 0 chr12 35034684 35035291 -109247198 - PABL_A LTR ERV1 0 660 1 5109 142 161 20 chr12 35035291 35035398 -109247091 - Tigger3b DNA MER2_type -2936 92 1 1786 186 3 0 chr12 35035515 35035816 -109246673 + AluJo SINE Alu 1 302 -10 1008 296 21 0 chr12 35036309 35036552 -109245937 - MIR SINE MIR -12 250 3 2341 115 0 0 chr12 35036878 35037190 -109245299 + AluSx SINE Alu 1 312 0 2283 113 43 61 chr12 35037640 35038082 -109244407 + LTR23 LTR ERV1 4 437 0 1747 162 3 0 chr12 35038587 35038871 -109243618 + MER34C LTR ERV1 12 296 -289 363 301 124 13 chr12 35038881 35039034 -109243455 + MIR SINE MIR 82 251 -11 1042 231 143 128 chr12 35039439 35039767 -109242722 - MER50 LTR ERV1 0 734 413 468 180 0 0 chr12 35039767 35039856 -109242633 - L1PA11 LINE L1 -4 6170 6082 1042 231 143 128 chr12 35039856 35040241 -109242248 - MER50 LTR ERV1 -321 413 10 290 291 71 40 chr12 35040250 35040432 -109242057 + MIR SINE MIR 2 184 -63 3046 147 16 8 chr12 35040454 35040956 -109241533 - MER84 LTR ERV1 0 507 2 475 122 14 14 chr12 35040956 35041030 -109241459 - MER84 LTR ERVI -433 74 1 180 283 65 0 chr12 35041034 35041080 -109241409 + MIR SINE MIR 210 258 -4 1451 217 102 28 chr12 35041412 35042048 -109240441 + LTR48 LTR ERV1 17 787 0 1007 107 13 7 chr12 35042387 35042536 -109239953 - AluY SINE Alu -4 307 158 302 358 16 24 chr12 35042627 35042741 -109239748 + MIR SINE MIR 32 145 -73 3149 113 0 13 chr12 35042741 35043211 -109239278 - MER4C LTR ERV1 0 465 2 2103 161 8 31 chr12 35044274 35044658 -109237831 + THE1C LTR MaLR 1 375 0 9254 121 35 43 chr12 35044658 35045136 -109237353 + THE1C-int LTR MaLR 1 481 -1099 2269 97 3 3 chr12 35045136 35045436 -109237053 + AluY SINE Alu 1 300 -11 9254 121 35 43 chr12 35045436 35046550 -109235939 + THE1C-int LTR MaLR 481 1580 0 2395 133 8 11 chr12 35046550 35046926 -109235563 + THE1C LTR MaLR 1 375 0 1666 181 25 54 chr12 35047345 35047391 -109235098 - MLT2C1 LTR ERVL -1 396 350 387 0 0 0 chr12 35047391 35047434 -109235055 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1666 181 25 54 chr12 35047434 35047795 -109234694 - MLT2C1 LTR ERVL -47 350 1 210 271 29 57 chr12 35048153 35048223 -109234266 - L2 LINE L2 -18 3254 3187 217 293 49 57 chr12 35048293 35048416 -109234073 - L2 LINE L2 -185 3087 2966 180 111 0 0 chr12 35049397 35049424 -109233065 + (TG)n Simple_repeat Simple_repeat 2 28 0 1042 198 30 128 chr12 35049697 35050102 -109232387 + MLT1A1 LTR MaLR 1 365 0 1039 119 6 6 chr12 35050171 35050200 -109232289 + (TTCC)n Simple_repeat Simple_repeat 1 206 0 1039 119 6 6 chr12 35050200 35050377 -109232112 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 758 269 56 0 chr12 35050537 35050734 -109231755 - MIR SINE MIR -6 256 49 2091 157 22 37 chr12 35053837 35054246 -109228243 + L1MA6 LINE L1 5633 6035 -265 834 119 45 0 chr12 35054255 35054389 -109228100 - Tigger1 DNA MER2_type -7 2411 2272 1090 237 88 10 chr12 35054408 35054716 -109227773 + LTR40b LTR ERVL 124 455 -7 628 235 0 0 chr12 35055242 35055357 -109227132 + FLAM_A SINE Alu 2 116 -17 3727 45 0 6 chr12 35055595 35055615 -109226874 + L1P LINE L1 4541 4560 -1586 225 0 0 0 chr12 35055615 35055640 -109226849 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 7466 25 5 0 chr12 35055640 35056765 -109225724 - L1PA3 LINE L1 -10 6145 5012 3727 45 0 6 chr12 35056765 35057232 -109225257 + L1P LINE L1 4558 5026 -1120 1557 145 74 26 chr12 35058211 35058502 -109223987 + AluJo SINE Alu 1 304 0 22 0 0 0 chr12 35059124 35059146 -109223343 + AT_rich Low_complexity Low_complexity 1 22 0 343 279 183 14 chr12 35059557 35059776 -109222713 + MIR SINE MIR 3 258 -4 256 287 93 0 chr12 35060122 35060230 -109222259 + HAL1 LINE L1 6 123 -2384 * 4070 252 68 47 chr12 35060220 35061100 -109221389 + L1MDa LINE L1 3 863 -5677 1588 176 33 19 chr12 35061100 35061407 -109221082 - AluJb SINE Alu -1 311 1 4070 252 68 47 chr12 35061407 35061442 -109221047 + L1MDa LINE L1 863 896 -5644 2668 188 40 4 chr12 35061442 35061943 -109220546 + LTR53 LTR ERVL 1 519 0 4070 252 68 47 chr12 35061943 35062490 -109219999 + L1MDa LINE L1 896 1496 -5044 1734 192 29 39 chr12 35062491 35063162 -109219327 + L1MC/D LINE L1 4964 5629 -730 290 296 28 19 chr12 35063169 35063277 -109219212 - MER87 LTR ERV1 0 541 433 699 209 17 17 chr12 35063643 35063815 -109218674 + L1MC/D LINE L1 5630 5801 -558 268 322 11 22 chr12 35064137 35064227 -109218262 - MIR SINE MIR -165 97 9 771 233 83 92 chr12 35065053 35065595 -109216894 - MER34 LTR ERV1 -5 537 1 3456 80 4 2 chr12 35065793 35066245 -109216244 - MLT2A2 LTR ERVL 0 453 1 2639 173 31 68 chr12 35066481 35067080 -109215409 + LTR9 LTR ERV1 1 577 -35 5680 151 20 31 chr12 35067080 35068163 -109214326 - MER11C LTR ERVK 0 1071 1 2639 173 31 68 chr12 35068163 35068198 -109214291 + LTR9 LTR ERV1 577 612 0 2107 122 0 32 chr12 35068499 35068810 -109213679 + AluSx SINE Alu 3 303 -9 491 224 26 9 chr12 35068998 35069114 -109213375 - LTR52 LTR ERVL -37 384 267 472 242 46 20 chr12 35069151 35069304 -109213185 - LTR52 LTR ERVL -256 165 9 2379 97 0 0 chr12 35069361 35069659 -109212830 + AluSc SINE Alu 1 298 -11 21 0 0 0 chr12 35069829 35069850 -109212639 + AT_rich Low_complexity Low_complexity 1 21 0 410 261 0 0 chr12 35070276 35070364 -109212125 + MER58 DNA MER1_type 12 99 -242 511 184 0 19 chr12 35070376 35070479 -109212010 + MER58 DNA MER1_type 2318 2418 -2 251 367 44 0 chr12 35073514 35073694 -109208795 + L1ME LINE L1 5376 5563 -603 322 258 58 65 chr12 35074528 35074683 -109207806 - L2 LINE L2 0 3313 3160 251 204 57 34 chr12 35074786 35074874 -109207615 - L1ME3A LINE L1 -158 6012 5923 914 314 33 18 chr12 35074918 35075374 -109207115 + ERVL LTR ERVL 2454 2916 -2848 801 253 84 4 chr12 35075958 35076207 -109206282 + ERVL LTR ERVL 4780 5048 -716 2430 187 41 98 chr12 35076223 35076950 -109205539 + LTR8A LTR ERV1 34 719 -8 561 279 32 59 chr12 35076954 35077321 -109205168 + ERVL LTR ERVL 5042 5364 -290 1024 307 79 31 chr12 35077594 35078033 -109204456 - L2 LINE L2 0 3313 2845 279 0 0 0 chr12 35078033 35078064 -109204425 + (TG)n Simple_repeat Simple_repeat 1 31 0 1024 307 79 31 chr12 35078064 35078142 -109204347 - L2 LINE L2 -468 2845 2772 1420 251 33 20 chr12 35078728 35079119 -109203370 - MSTD LTR MaLR 0 396 1 23 0 0 0 chr12 35079957 35079980 -109202509 + AT_rich Low_complexity Low_complexity 1 23 0 1357 240 9 76 chr12 35080181 35080631 -109201858 - LTR40a LTR ERVL 0 519 100 1034 129 8 98 chr12 35080688 35080744 -109201745 - L1MA7 LINE L1 -138 6153 6094 1953 153 143 11 chr12 35080744 35081122 -109201367 + MSTC LTR MaLR 1 428 0 1034 129 8 98 chr12 35081122 35081321 -109201168 - L1MA7 LINE L1 -197 6094 5921 4888 183 25 17 chr12 35082258 35083237 -109199252 + L1M1 LINE L1 626 1611 -5954 * 6403 117 24 5 chr12 35083220 35084296 -109198193 + L1M1 LINE L1 2198 3294 -4271 2390 18 7 4 chr12 35084858 35085138 -109197351 + AluY SINE Alu 1 281 -30 592 337 129 5 chr12 35085204 35085575 -109196914 + L2 LINE L2 2897 3313 0 1467 201 52 4 chr12 35085582 35085851 -109196638 + AluJo SINE Alu 1 282 -30 9803 81 13 4 chr12 35086161 35087860 -109194629 + L1P3 LINE L1 3939 5650 -504 364 319 59 25 chr12 35088568 35088687 -109193802 + L2 LINE L2 3142 3264 -8 887 183 6 0 chr12 35088970 35089145 -109193344 - L1MB1 LINE L1 -2 6166 5991 3761 158 112 7 chr12 35089745 35090492 -109191997 - LTR1B LTR ERV1 0 826 1 701 274 118 14 chr12 35090622 35090910 -109191579 - LTR36 LTR ERV1 0 611 294 392 222 30 36 chr12 35091455 35091622 -109190867 - LTR36 LTR ERV1 -445 166 1 4107 90 10 89 chr12 35091989 35092710 -109189779 - MER4A LTR ERV1 0 664 1 217 103 15 59 chr12 35092751 35092819 -109189670 + (TTC)n Simple_repeat Simple_repeat 2 66 0 254 257 27 0 chr12 35093577 35093651 -109188838 - L1MC4 LINE L1 -140 7902 7827 551 277 113 0 chr12 35094651 35094828 -109187661 + MER102b DNA MER1_type 135 331 -10 182 133 0 22 chr12 35095270 35095315 -109187174 + (GGGTG)n Simple_repeat Simple_repeat 3 46 0 221 179 19 75 chr12 35095452 35095558 -109186931 + G-rich Low_complexity Low_complexity 5 104 0 210 150 0 0 chr12 35095563 35095603 -109186886 + (G)n Simple_repeat Simple_repeat 1 40 0 221 170 19 94 chr12 35095614 35095720 -109186769 + (GGGTG)n Simple_repeat Simple_repeat 1 98 0 3288 11 0 0 chr12 35095863 35096232 -109186257 - L1PA3 LINE L1 -150 6005 5637 3014 193 39 15 chr12 35096232 35096850 -109185639 - LTR48B LTR ERV1 -11 633 1 385 332 21 58 chr12 35097091 35097281 -109185208 + MIR SINE MIR 2 184 -78 1316 121 109 4 chr12 35097553 35097792 -109184697 + MER21A LTR ERV1 1 264 -667 3189 131 35 36 chr12 35097797 35098348 -109184141 + MER21A LTR ERV1 376 925 -6 2550 148 34 5 chr12 35100009 35100422 -109182067 - MSTB LTR MaLR 0 426 2 279 315 9 0 chr12 35102233 35102341 -109180148 + GA-rich Low_complexity Low_complexity 2 110 0 1474 189 27 76 chr12 35102404 35102811 -109179678 + MLT1B LTR MaLR 4 390 0 435 274 11 0 chr12 35103894 35103989 -109178500 + MER20B DNA MER1_type 101 196 -587 26 0 0 0 chr12 35103993 35104019 -109178470 + AT_rich Low_complexity Low_complexity 1 26 0 5320 155 33 13 chr12 35104025 35105323 -109177166 - L1MA8 LINE L1 -15 6276 4954 266 351 157 36 chr12 35106175 35106423 -109176066 + L2 LINE L2 156 433 -2881 267 259 80 62 chr12 35106770 35106882 -109175607 + L2 LINE L2 2276 2389 -925 596 98 0 43 chr12 35106883 35106999 -109175490 + FRAM SINE Alu 59 170 0 449 204 0 0 chr12 35107676 35107764 -109174725 + L2 LINE L2 818 905 -2409 694 332 35 14 chr12 35107781 35108064 -109174425 + L2 LINE L2 1145 1433 -1881 377 289 35 0 chr12 35108067 35108181 -109174308 - L2 LINE L2 -1621 1693 1576 21 0 0 0 chr12 35108571 35108592 -109173897 + AT_rich Low_complexity Low_complexity 1 21 0 340 374 24 15 chr12 35108828 35109034 -109173455 - HAL1b LINE L1 -659 689 482 1182 198 132 40 chr12 35109286 35109559 -109172930 + AluJo SINE Alu 1 298 -4 22 0 0 0 chr12 35109778 35109800 -109172689 + AT_rich Low_complexity Low_complexity 1 22 0 1518 102 5 0 chr12 35110031 35110227 -109172262 - AluSp SINE Alu -16 297 101 600 60 12 12 chr12 35110776 35110860 -109171629 + AluY SINE Alu 217 300 -11 903 136 19 19 chr12 35110959 35111114 -109171375 + AluSg/x SINE Alu 147 301 -11 2608 201 68 28 chr12 35111231 35111719 -109170770 - L1MB8 LINE L1 0 6178 5711 2213 164 6 0 chr12 35111719 35112054 -109170435 + MER1B DNA MER1_type 1 337 0 2608 201 68 28 chr12 35112054 35112890 -109169599 - L1MB8 LINE L1 -467 5711 4758 2111 134 3 3 chr12 35113049 35113354 -109169135 + AluSx SINE Alu 1 305 -7 602 326 61 13 chr12 35113364 35113998 -109168491 - L1ME3A LINE L1 -310 5860 5194 995 127 16 42 chr12 35114003 35114192 -109168297 - FRAM SINE Alu 0 176 1 332 235 73 62 chr12 35114568 35114747 -109167742 - L1ME3A LINE L1 -1353 4793 4613 516 258 55 0 chr12 35114908 35115071 -109167418 - L1M4 LINE L1 -1063 5083 4912 286 356 80 16 chr12 35115737 35115925 -109166564 + MIR SINE MIR 24 223 -39 266 299 120 48 chr12 35116009 35116086 -109166403 + MIR SINE MIR 64 134 -128 2497 57 3 0 chr12 35116086 35116386 -109166103 + AluY SINE Alu 1 301 -10 266 299 120 48 chr12 35116386 35116475 -109166014 + MIR SINE MIR 134 242 -20 189 205 51 0 chr12 35116445 35116484 -109166005 + L2 LINE L2 3217 3257 -15 * 249 230 158 65 chr12 35117458 35117753 -109164736 + L1ME LINE L1 5270 5555 -607 213 88 0 0 chr12 35117898 35117909 -109164580 + (TA)n Simple_repeat Simple_repeat 2 12 -23 2365 82 0 25 chr12 35117909 35118224 -109164265 - AluSq SINE Alu -6 307 1 213 88 0 0 chr12 35118224 35118246 -109164243 + (TA)n Simple_repeat Simple_repeat 11 35 0 1331 52 0 0 chr12 35125110 35125265 -109157224 - AluSq SINE Alu -77 236 82 2528 77 0 0 chr12 35125487 35125798 -109156691 - AluSq SINE Alu 0 313 3 387 119 0 0 chr12 35126689 35126756 -109155733 + (TG)n Simple_repeat Simple_repeat 2 68 0 252 300 11 44 chr12 35127095 35127185 -109155304 - MIR SINE MIR -141 121 35 279 0 0 0 chr12 35127423 35127454 -109155035 + (A)n Simple_repeat Simple_repeat 1 31 0 680 229 75 54 chr12 35128446 35128686 -109153803 - MIR SINE MIR 0 262 18 25 0 0 0 chr12 35129091 35129116 -109153373 + AT_rich Low_complexity Low_complexity 1 25 0 277 316 25 0 chr12 35129784 35129863 -109152626 - MIR SINE MIR -67 141 61 28 0 0 0 chr12 35131425 35131453 -109151036 + AT_rich Low_complexity Low_complexity 1 28 0 363 281 66 31 chr12 35132022 35132218 -109150271 - L1MC4a LINE L1 -1794 6014 5812 24 0 0 0 chr12 35132537 35132561 -109149928 + AT_rich Low_complexity Low_complexity 1 24 0 879 292 106 43 chr12 35133322 35133812 -109148677 + L2 LINE L2 2281 2801 -513 445 213 0 87 chr12 35133826 35133901 -109148588 - MER94 DNA DNA -14 120 59 1525 138 63 0 chr12 35133901 35134140 -109148349 - AluSx SINE Alu -20 292 39 445 213 0 87 chr12 35134140 35134191 -109148298 - MER94 DNA DNA -75 59 5 640 328 95 39 chr12 35134203 35134287 -109148202 + L2 LINE L2 2805 2883 -430 201 74 0 0 chr12 35134287 35134314 -109148175 + (TG)n Simple_repeat Simple_repeat 2 28 0 640 328 95 39 chr12 35134314 35134711 -109147778 + L2 LINE L2 2883 3313 0 350 359 81 31 chr12 35135093 35135316 -109147173 + MIR SINE MIR 4 237 -25 338 305 0 0 chr12 35135322 35135404 -109147085 + L2 LINE L2 3186 3267 -5 1745 142 29 7 chr12 35135617 35135892 -109146597 - AluJb SINE Alu -12 300 20 222 363 105 11 chr12 35137115 35137305 -109145184 + MIR SINE MIR 7 214 -48 390 286 36 0 chr12 35137815 35137927 -109144562 + MIR3 SINE MIR 87 202 -6 25 0 0 0 chr12 35138438 35138463 -109144026 + AT_rich Low_complexity Low_complexity 1 25 0 223 304 0 0 chr12 35138496 35138552 -109143937 + (TA)n Simple_repeat Simple_repeat 1 56 0 309 319 43 35 chr12 35138577 35138693 -109143796 - L2 LINE L2 0 3272 3156 205 138 0 0 chr12 35138691 35138720 -109143769 + MIR SINE MIR 82 110 -152 * 2173 114 13 0 chr12 35138796 35139104 -109143385 - AluSx SINE Alu 0 312 1 231 88 0 0 chr12 35139107 35139141 -109143348 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 389 71 0 214 chr12 35140819 35140917 -109141572 - MADE1 DNA Mariner -1 79 3 628 308 88 12 chr12 35141427 35141886 -109140603 + L2 LINE L2 2645 3310 -3 394 363 19 0 chr12 35142440 35142597 -109139892 - MIR SINE MIR -50 212 53 2283 82 3 3 chr12 35142679 35142983 -109139506 + AluY SINE Alu 4 307 -4 183 352 0 19 chr12 35143365 35143419 -109139070 + L2 LINE L2 2087 2139 -1175 415 343 73 11 chr12 35143794 35143972 -109138517 + MIR3 SINE MIR 18 206 -2 21 36 0 0 chr12 35144361 35144389 -109138100 + AT_rich Low_complexity Low_complexity 1 28 0 1760 64 176 0 chr12 35144557 35144807 -109137682 - AluSc SINE Alu -5 294 1 691 230 64 5 chr12 35145056 35145260 -109137229 - LTR33 LTR ERVL -1 520 305 189 336 124 25 chr12 35145605 35145846 -109136643 - L2 LINE L2 -179 3093 2829 2391 86 0 0 chr12 35146101 35146404 -109136085 + AluY SINE Alu 1 303 -8 486 284 80 38 chr12 35146623 35146862 -109135627 - MIR SINE MIR -12 250 2 21 0 0 0 chr12 35147631 35147652 -109134837 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr12 35148161 35148194 -109134295 + AT_rich Low_complexity Low_complexity 1 33 0 2073 125 3 7 chr12 35148612 35148909 -109133580 + AluSx SINE Alu 1 296 -16 22 70 0 0 chr12 35149390 35149433 -109133056 + AT_rich Low_complexity Low_complexity 1 43 0 246 276 209 22 chr12 35149702 35149836 -109132653 - L2 LINE L2 -7 3265 3107 22 70 0 0 chr12 35151035 35151078 -109131411 + AT_rich Low_complexity Low_complexity 1 43 0 2038 123 7 13 chr12 35151106 35151407 -109131082 - AluSx SINE Alu -13 299 1 859 164 6 18 chr12 35151959 35152124 -109130365 + MLT1D LTR MaLR 1 163 -342 572 184 95 89 chr12 35152126 35152254 -109130235 + MLT1D LTR MaLR 287 418 -87 2285 100 0 10 chr12 35152254 35152564 -109129925 - AluSg SINE Alu -3 307 1 572 184 95 89 chr12 35152564 35152625 -109129864 + MLT1D LTR MaLR 418 477 -28 259 128 256 0 chr12 35152659 35152737 -109129752 + MLT1D LTR MaLR 408 505 0 23 33 0 0 chr12 35152758 35152788 -109129701 + AT_rich Low_complexity Low_complexity 1 30 0 249 231 138 0 chr12 35153014 35153079 -109129410 + L2 LINE L2 3239 3312 -1 23 0 0 0 chr12 35153389 35153412 -109129077 + AT_rich Low_complexity Low_complexity 1 23 0 329 294 91 21 chr12 35153692 35153835 -109128654 + L1ME4a LINE L1 5628 5780 -341 274 264 108 7 chr12 35153923 35154071 -109128418 + L1ME4a LINE L1 5956 6118 -3 1851 176 0 13 chr12 35155469 35155782 -109126707 - AluJo SINE Alu -3 309 1 1994 136 0 0 chr12 35157094 35157374 -109125115 - AluSx SINE Alu -17 295 16 1902 62 0 8 chr12 35157382 35157623 -109124866 - AluY SINE Alu -8 303 65 446 272 200 56 chr12 35157623 35157935 -109124554 + L3 LINE CR1 1113 1473 -104 22 0 0 0 chr12 35158683 35158705 -109123784 + AT_rich Low_complexity Low_complexity 1 22 0 651 306 77 5 chr12 35158802 35159024 -109123465 - MIR SINE MIR -20 242 5 209 261 43 33 chr12 35159373 35159465 -109123024 - L2 LINE L2 -1905 1409 1317 2242 153 20 52 chr12 35159465 35159907 -109122582 + MSTC LTR MaLR 1 426 0 1134 312 40 3 chr12 35159945 35160291 -109122198 - L2 LINE L2 -2047 1267 909 2551 266 109 25 chr12 35160301 35161294 -109121195 + L2 LINE L2 1705 2780 -534 689 323 130 22 chr12 35161346 35161715 -109120774 + L2 LINE L2 2904 3312 -1 328 200 0 0 chr12 35161917 35161972 -109120517 - tRNA-Met-e tRNA tRNA -20 55 1 1531 173 0 18 chr12 35162745 35163022 -109119467 + AluJo SINE Alu 40 311 -1 200 333 22 52 chr12 35164209 35164344 -109118145 - L2 LINE L2 -309 2963 2833 314 143 16 0 chr12 35165644 35165707 -109116782 + (TG)n Simple_repeat Simple_repeat 2 65 0 458 272 66 15 chr12 35166138 35166274 -109116215 + MIR SINE MIR 44 186 -76 33 73 0 0 chr12 35167049 35167117 -109115372 + AT_rich Low_complexity Low_complexity 1 68 0 402 21 0 0 chr12 35168402 35168449 -109114040 + (CA)n Simple_repeat Simple_repeat 1 47 0 1235 171 18 13 chr12 35169435 35169663 -109112826 + MLT1A1 LTR MaLR 1 229 -136 298 343 74 23 chr12 35170222 35170438 -109112051 - L2 LINE L2 -522 2792 2566 260 275 14 0 chr12 35170511 35170580 -109111909 - L2 LINE L2 -958 2356 2287 373 359 82 41 chr12 35170650 35170964 -109111525 - L2 LINE L2 -1154 2160 1816 2406 80 0 0 chr12 35170964 35171264 -109111225 + AluY SINE Alu 1 300 -11 373 359 82 41 chr12 35171264 35171459 -109111030 - L2 LINE L2 -1498 1816 1630 593 77 0 0 chr12 35172919 35172997 -109109492 - MADE1 DNA Mariner 0 80 3 16606 60 3 0 chr12 35172997 35175147 -109107342 + L1P LINE L1 914 3070 -3076 240 361 37 19 chr12 35175489 35175597 -109106892 + MIR SINE MIR 34 143 -119 25 75 0 0 chr12 35175970 35176023 -109106466 + AT_rich Low_complexity Low_complexity 1 53 0 598 318 45 34 chr12 35176270 35176462 -109106027 + L2 LINE L2 302 499 -2815 2054 137 0 7 chr12 35176462 35176768 -109105721 - AluSx SINE Alu -8 304 1 598 318 45 34 chr12 35176768 35176842 -109105647 + L2 LINE L2 499 571 -2743 5395 241 54 108 chr12 35176955 35177872 -109104617 + L1M1 LINE L1 3411 4376 -3189 914 200 12 0 chr12 35177872 35178037 -109104452 + AluJb SINE Alu 145 311 -1 5395 241 54 108 chr12 35178037 35179056 -109103433 + L1M1 LINE L1 4376 5448 -2117 1791 124 0 3 chr12 35179056 35179335 -109103154 + L1MA2 LINE L1 6024 6304 0 5395 241 54 108 chr12 35179335 35179822 -109102667 + L1M1 LINE L1 5448 5787 -1778 4026 65 0 6 chr12 35179822 35180346 -109102143 - L1PA5 LINE L1 -3 6151 5631 5395 241 54 108 chr12 35180346 35180972 -109101517 + L1M1 LINE L1 5787 6445 -1120 688 248 97 27 chr12 35181952 35182210 -109100279 + AluJo SINE Alu 2 277 -35 1024 47 8 0 chr12 35182425 35182573 -109099916 + L1PA3 LINE L1 6015 6163 0 1905 107 13 24 chr12 35183350 35183648 -109098841 - AluSg SINE Alu -12 298 4 2052 135 3 3 chr12 35185074 35185085 -109097404 - AluSq SINE Alu -17 296 286 459 0 0 0 chr12 35185085 35185136 -109097353 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2052 135 3 3 chr12 35185136 35185420 -109097069 - AluSq SINE Alu -26 287 1 194 333 13 13 chr12 35186020 35186095 -109096394 + L2 LINE L2 3236 3310 -3 3665 88 31 99 chr12 35186324 35186968 -109095521 + MER4A LTR ERV1 1 600 0 665 213 141 25 chr12 35187105 35187437 -109095052 + LTR48 LTR ERV1 4 459 -328 1909 221 31 81 chr12 35187437 35188081 -109094408 + LTR9 LTR ERV1 1 612 0 665 213 141 25 chr12 35188081 35188113 -109094376 + LTR48 LTR ERV1 459 486 -301 1116 198 18 37 chr12 35188786 35189059 -109093430 + LTR48B LTR ERV1 377 644 0 24 53 0 0 chr12 35189572 35189610 -109092879 + AT_rich Low_complexity Low_complexity 1 38 0 3460 214 106 56 chr12 35189652 35190718 -109091771 + LTR28 LTR ERV1 1 1736 -19 2882 133 69 0 chr12 35190736 35191240 -109091249 - MER34C LTR ERV1 -7 578 40 4732 156 20 14 chr12 35191444 35192325 -109090164 + L1MA4 LINE L1 5414 6300 0 21 0 0 0 chr12 35192398 35192419 -109090070 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 35192606 35192627 -109089862 + AT_rich Low_complexity Low_complexity 1 21 0 240 177 0 32 chr12 35192948 35193010 -109089479 + HsTC2 DNA Tc2 232 291 -1607 607 300 31 27 chr12 35193014 35193237 -109089252 + HsTC2 DNA Tc2 488 711 -1187 3682 144 76 19 chr12 35193237 35193881 -109088608 - MER39 LTR ERV1 0 707 27 1182 203 99 60 chr12 35193889 35194303 -109088186 - LTR8A LTR ERV1 -8 719 290 230 174 0 0 chr12 35194494 35194540 -109087949 - MER87 LTR ERV1 -394 147 102 4237 189 30 2 chr12 35194547 35195334 -109087155 - MSTA-int LTR MaLR -842 809 1 2132 146 122 10 chr12 35195334 35195719 -109086770 - MSTA LTR MaLR 0 428 1 2252 149 0 5 chr12 35195917 35196285 -109086204 - MER47A DNA MER2_type 0 366 1 739 236 69 69 chr12 35196435 35196769 -109085720 - MLT1F-int LTR MaLR -760 611 278 339 293 21 14 chr12 35196770 35196910 -109085579 - MLT1F-int LTR MaLR -1230 141 1 1870 122 0 4 chr12 35196927 35197189 -109085300 - AluSg SINE Alu -49 261 1 1349 263 75 58 chr12 35197190 35197722 -109084767 - MLT1F LTR MaLR 0 542 2 2994 144 80 4 chr12 35197749 35198341 -109084148 + LTR24C LTR ERV1 2 467 0 202 268 0 54 chr12 35198437 35198493 -109083996 - L2 LINE L2 -257 3056 3004 1831 166 7 0 chr12 35198532 35198822 -109083667 + AluJb SINE Alu 12 303 -9 23 54 0 0 chr12 35199089 35199126 -109083363 + AT_rich Low_complexity Low_complexity 1 37 0 1714 173 65 3 chr12 35199405 35199729 -109082760 + Tigger3(Golem) DNA MER2_type 1 344 -2685 369 62 0 0 chr12 35199731 35199779 -109082710 + Alu SINE Alu 1 48 -253 * 493 254 116 13 chr12 35199769 35199993 -109082496 - LTR16A1 LTR ERVL -9 448 202 942 283 120 16 chr12 35200330 35200698 -109081791 + HERV16 LTR ERVL 1948 2353 -2643 452 255 9 9 chr12 35201262 35201368 -109081121 - L2 LINE L2 -16 3297 3192 339 354 24 0 chr12 35201536 35201663 -109080826 - MIR SINE MIR -31 231 102 27 29 0 0 chr12 35201917 35201951 -109080538 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr12 35202204 35202234 -109080255 + AT_rich Low_complexity Low_complexity 1 30 0 2979 125 30 118 chr12 35202293 35202964 -109079525 + LTR9 LTR ERV1 1 612 0 2487 142 47 0 chr12 35204353 35204762 -109077727 - MSTC LTR MaLR 0 428 1 357 151 72 0 chr12 35204854 35205020 -109077469 + (TA)n Simple_repeat Simple_repeat 2 179 0 365 173 66 2 chr12 35205036 35205502 -109076987 + (TA)n Simple_repeat Simple_repeat 1 495 0 36 40 0 0 chr12 35205503 35205553 -109076936 + AT_rich Low_complexity Low_complexity 1 50 0 1701 222 73 16 chr12 35206054 35206504 -109075985 + L1ME1 LINE L1 5373 5848 -318 270 56 0 0 chr12 35206514 35206550 -109075939 + (GA)n Simple_repeat Simple_repeat 1 36 0 272 291 13 0 chr12 35206891 35206970 -109075519 + (TTTA)n Simple_repeat Simple_repeat 3 82 0 228 203 43 14 chr12 35207005 35207074 -109075415 + A-rich Low_complexity Low_complexity 1 71 0 2217 108 7 0 chr12 35207114 35207410 -109075079 + AluSx SINE Alu 1 298 -14 246 373 24 24 chr12 35207892 35208018 -109074471 + L2 LINE L2 2882 3007 -265 377 348 44 0 chr12 35208021 35208156 -109074333 + MIR SINE MIR 4 144 -118 1452 225 64 3 chr12 35208159 35208505 -109073984 + MLT2D LTR ERVL 1 367 -47 329 141 43 33 chr12 35208524 35208638 -109073851 + MLT2B2 LTR ERVL 334 515 0 296 258 0 0 chr12 35208870 35208932 -109073557 + MER94 DNA DNA 1 62 -72 278 323 0 0 chr12 35210199 35210292 -109072197 - L2 LINE L2 0 3313 3221 507 239 107 41 chr12 35210914 35211111 -109071378 + MLT1J2 LTR MaLR 1 210 -240 264 294 24 0 chr12 35211152 35211237 -109071252 + MLT1J2 LTR MaLR 272 406 -44 21 0 0 0 chr12 35211641 35211662 -109070827 + AT_rich Low_complexity Low_complexity 1 21 0 40899 40 26 2 chr12 35211796 35217740 -109064749 + L1PA3 LINE L1 84 6170 0 619 235 0 0 chr12 35217998 35218113 -109064376 - FLAM_A SINE Alu -26 116 2 185 366 59 0 chr12 35218527 35218628 -109063861 - L2 LINE L2 -482 2832 2726 1195 237 88 10 chr12 35218638 35218946 -109063543 - LTR40b LTR ERVL -7 455 124 880 119 45 0 chr12 35218965 35219099 -109063390 + Tigger1 DNA MER2_type 2272 2411 -7 2196 159 22 39 chr12 35219101 35219517 -109062972 - L1MA6 LINE L1 -259 6041 5633 438 211 41 34 chr12 35222202 35222349 -109060140 + L1MC/D LINE L1 1349 1496 -5044 1772 196 29 40 chr12 35222350 35223022 -109059467 + L1MC/D LINE L1 5358 6023 -730 239 351 26 9 chr12 35223576 35223690 -109058799 - MER5A DNA MER1_type -20 169 54 27 29 0 0 chr12 35224004 35224038 -109058451 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 35224233 35224282 -109058207 + AT_rich Low_complexity Low_complexity 1 49 0 277 258 82 21 chr12 35225157 35225254 -109057235 + MIR SINE MIR 42 144 -64 348 336 168 38 chr12 35225573 35226186 -109056303 - L2 LINE L2 -1904 1410 718 200 184 0 0 chr12 35226456 35226494 -109055995 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 187 247 24 82 chr12 35226738 35226823 -109055666 + L2 LINE L2 1153 1232 -2082 22 35 0 0 chr12 35226945 35226974 -109055515 + AT_rich Low_complexity Low_complexity 1 29 0 1057 273 62 67 chr12 35227211 35227676 -109054813 - MLT1J LTR MaLR -42 469 7 22 35 0 0 chr12 35227807 35227836 -109054653 + AT_rich Low_complexity Low_complexity 1 29 0 398 300 21 7 chr12 35227836 35227976 -109054513 + HsTC2 DNA Tc2 4 145 -1753 2076 235 73 19 chr12 35227984 35228572 -109053917 + HsTC2 DNA Tc2 1274 1893 -5 336 242 0 0 chr12 35228735 35228801 -109053688 + L2 LINE L2 3243 3308 -5 265 268 82 21 chr12 35230180 35230277 -109052212 + MIR SINE MIR 42 144 -64 314 231 77 115 chr12 35230771 35230798 -109051691 - L2 LINE L2 0 3313 3286 2219 99 3 7 chr12 35230798 35231100 -109051389 + AluSp SINE Alu 1 301 -12 314 231 77 115 chr12 35231100 35231202 -109051287 - L2 LINE L2 -27 3286 3189 192 40 0 0 chr12 35236297 35236322 -109046167 + (GGGA)n Simple_repeat Simple_repeat 3 27 0 834 153 90 37 chr12 35236788 35236977 -109045512 - AluJo SINE Alu -113 199 1 2380 92 0 6 chr12 35239014 35239350 -109043139 - AluSq SINE Alu 0 334 1 999 281 102 52 chr12 35239351 35240167 -109042322 - HAL1 LINE L1 -1021 1486 630 357 263 77 94 chr12 35240190 35240712 -109041777 - HAL1 LINE L1 -1953 554 42 224 311 48 39 chr12 35240769 35240872 -109041617 + L2 LINE L2 2727 2830 -484 304 319 44 9 chr12 35240964 35241077 -109041412 + L2 LINE L2 3197 3313 0 2295 143 20 0 chr12 35241159 35241516 -109040973 - THE1B LTR MaLR 0 364 1 591 318 50 14 chr12 35241810 35242030 -109040459 - MIR SINE MIR -33 229 2 750 181 6 6 chr12 35242384 35242550 -109039939 - L1MA9 LINE L1 0 6312 6147 12890 107 40 122 chr12 35242573 35243532 -109038957 - Tigger1 DNA MER2_type 0 2418 1382 2166 134 6 0 chr12 35243532 35243868 -109038621 + L1PA16 LINE L1 5828 6165 -1 12890 107 40 122 chr12 35243868 35244907 -109037582 - Tigger1 DNA MER2_type -1036 1382 260 1987 144 0 0 chr12 35244907 35245199 -109037290 + AluSx SINE Alu 1 292 -20 12890 107 40 122 chr12 35245199 35245482 -109037007 - Tigger1 DNA MER2_type -2158 260 376 2195 171 35 26 chr12 35245482 35245904 -109036585 - MSTB LTR MaLR 0 426 1 12890 107 40 122 chr12 35245904 35246253 -109036236 - Tigger1 DNA MER2_type -2041 377 1 450 141 0 0 chr12 35246256 35246327 -109036162 - L1MA9 LINE L1 -184 6128 6058 256 237 48 29 chr12 35246347 35246479 -109036010 - L1ME LINE L1 -298 5823 5687 32 43 0 0 chr12 35246747 35246793 -109035696 + AT_rich Low_complexity Low_complexity 1 46 0 1011 211 0 0 chr12 35246834 35247014 -109035475 - MER5A DNA MER1_type -7 182 3 250 343 27 34 chr12 35247194 35247340 -109035149 + MIR SINE MIR 72 216 -46 267 341 81 16 chr12 35247695 35247818 -109034671 + L2 LINE L2 3111 3241 -31 4496 211 47 15 chr12 35248387 35250354 -109032135 + L1MB7 LINE L1 4151 6184 0 32 43 0 0 chr12 35250402 35250448 -109032041 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr12 35251983 35252011 -109030478 + AT_rich Low_complexity Low_complexity 1 28 0 334 301 27 22 chr12 35252375 35252558 -109029931 + L1ME LINE L1 5634 5817 -304 11835 161 85 13 chr12 35252559 35255075 -109027414 + L1MB7 LINE L1 4 2699 -3683 6964 228 55 22 chr12 35255045 35256606 -109025883 + L1MB7 LINE L1 3457 5097 -1285 * 2149 117 0 3 chr12 35256606 35256919 -109025570 + AluSx SINE Alu 5 312 0 6964 228 55 22 chr12 35256919 35257305 -109025184 + L1MB7 LINE L1 5097 5469 -913 838 210 70 11 chr12 35257512 35257821 -109024668 - MLT1A1 LTR MaLR -1 364 1 316 286 186 45 chr12 35257828 35258048 -109024441 + MIR SINE MIR 5 255 -7 31254 108 17 59 chr12 35258739 35265159 -109017330 + L1PA7 LINE L1 12 6154 0 345 212 94 0 chr12 35265537 35265622 -109016867 - L2 LINE L2 0 3313 3221 2640 199 38 19 chr12 35265622 35266250 -109016239 + L1MB7 LINE L1 5781 6420 0 233 313 45 36 chr12 35266250 35266362 -109016127 - L2 LINE L2 -8 3305 3193 1254 186 121 29 chr12 35267004 35267311 -109015178 + MLT2C1 LTR ERVL 6 340 -57 2114 178 43 0 chr12 35267349 35267806 -109014683 + HERVL LTR ERVL 1972 2443 -3321 240 184 0 0 chr12 35267806 35267855 -109014634 + (TG)n Simple_repeat Simple_repeat 2 50 0 298 319 37 44 chr12 35267862 35267997 -109014492 - MIR SINE MIR -104 158 25 22 35 0 0 chr12 35268500 35268529 -109013960 + AT_rich Low_complexity Low_complexity 1 29 0 522 0 0 0 chr12 35268648 35268706 -109013783 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 239 431 17 11 chr12 35268735 35268909 -109013580 + MER5B DNA MER1_type 1 175 -3 27 29 0 0 chr12 35269183 35269217 -109013272 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 35269412 35269461 -109013028 + AT_rich Low_complexity Low_complexity 1 49 0 4388 220 134 21 chr12 35270446 35272175 -109010314 + L1M4 LINE L1 830 2751 -3895 320 104 21 0 chr12 35272175 35272223 -109010266 + MSTB2 LTR MaLR 408 456 -1 4194 249 82 52 chr12 35272223 35273907 -109008582 + MLT1A1-int LTR MaLR 2 1735 0 1278 207 50 94 chr12 35273907 35274288 -109008201 + MLT1A1 LTR MaLR 1 364 -1 8598 256 47 11 chr12 35274321 35277264 -109005225 + L1M4 LINE L1 2798 5845 -812 3984 176 47 25 chr12 35277272 35278102 -109004387 + L1MB5 LINE L1 5281 6134 -40 1819 170 7 7 chr12 35278102 35278396 -109004093 + AluJb SINE Alu 1 294 -18 3984 176 47 25 chr12 35278396 35278430 -109004059 + L1MB5 LINE L1 6134 6166 -8 723 266 42 55 chr12 35278513 35278802 -109003687 - LTR41 LTR ERVL -14 759 475 339 229 66 25 chr12 35278963 35279085 -109003404 - LTR41 LTR ERVL -646 127 1 543 302 57 77 chr12 35280517 35280987 -109001502 + L2 LINE L2 2853 3313 0 2349 93 0 10 chr12 35281565 35281875 -109000614 + AluSc SINE Alu 3 309 0 250 287 47 23 chr12 35282194 35282323 -109000166 - MER74B LTR ERVL -77 545 414 407 306 81 19 chr12 35283319 35283577 -108998912 + L1M4 LINE L1 2341 2614 -3532 455 245 87 21 chr12 35283778 35284064 -108998425 + L1M4 LINE L1 2860 3164 -2982 207 0 0 0 chr12 35284118 35284141 -108998348 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 1891 188 39 0 chr12 35284161 35284496 -108997993 + MER7A DNA MER2_type 1 346 0 311 299 51 32 chr12 35284496 35284644 -108997845 + L1MEc LINE L1 115 268 -6128 411 286 43 33 chr12 35284836 35285112 -108997377 + L1M4 LINE L1 3608 3886 -2260 13686 190 27 43 chr12 35285118 35288525 -108993964 + L1M1 LINE L1 13 3783 -3782 30380 104 10 32 chr12 35288533 35292692 -108989797 + L1PA7 LINE L1 1 4040 -2429 1878 149 24 0 chr12 35292692 35292981 -108989508 + AluSg SINE Alu 1 296 -14 30380 104 10 32 chr12 35292981 35295356 -108987133 + L1PA7 LINE L1 4040 6465 -4 1500 261 21 13 chr12 35295352 35295824 -108986665 + L1M1 LINE L1 3769 4244 -3321 * 2620 138 9 0 chr12 35295822 35296264 -108986225 - L1 LINE L1 -1191 4955 4510 1947 136 3 3 chr12 35296264 35296559 -108985930 - AluSx SINE Alu -12 300 6 9674 235 57 25 chr12 35296604 35296956 -108985533 - L1MB1 LINE L1 -1 6403 6064 186 43 0 0 chr12 35296956 35296979 -108985510 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 9674 235 57 25 chr12 35296979 35298222 -108984267 - L1MB1 LINE L1 -340 6064 4862 2090 113 10 0 chr12 35298222 35298513 -108983976 - AluSg SINE Alu -16 294 1 9674 235 57 25 chr12 35298513 35299872 -108982617 - L1MB1 LINE L1 -1542 4862 3548 2277 96 0 0 chr12 35299872 35300175 -108982314 - AluY SINE Alu -8 303 1 9674 235 57 25 chr12 35300175 35302146 -108980343 - L1MB1 LINE L1 -2856 3548 1272 12817 212 47 28 chr12 35302153 35302689 -108979800 + L1MA9 LINE L1 2871 3395 -4336 1151 207 4 0 chr12 35302689 35302921 -108979568 + MER46A DNA MER2_type 4 236 0 12817 212 47 28 chr12 35302921 35306130 -108976359 + L1MA9 LINE L1 3395 6757 -974 216 0 0 0 chr12 35306130 35306154 -108976335 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 12817 212 47 28 chr12 35306154 35307135 -108975354 + L1MA9 LINE L1 6757 7718 -13 23 0 0 0 chr12 35307905 35307928 -108974561 + AT_rich Low_complexity Low_complexity 1 23 0 6024 84 4 9 chr12 35308425 35309547 -108972942 - L1PA14 LINE L1 0 6161 5077 2114 133 19 32 chr12 35309547 35309916 -108972573 + THE1B LTR MaLR 1 364 0 6024 84 4 9 chr12 35309916 35310711 -108971778 - L1PA14 LINE L1 -1084 5077 4279 232 283 158 33 chr12 35311247 35311367 -108971122 + LTR50 LTR ERVL 18 152 -643 502 262 55 6 chr12 35311371 35311535 -108970954 - MER5B DNA MER1_type -2 176 5 418 318 126 35 chr12 35311667 35311928 -108970561 + LTR50 LTR ERVL 353 637 -158 260 250 24 0 chr12 35313305 35313389 -108969100 + (TA)n Simple_repeat Simple_repeat 1 86 0 267 140 35 18 chr12 35314644 35314701 -108967788 + HSMAR1 DNA Mariner 1230 1287 0 217 0 0 57 chr12 35316961 35316996 -108965493 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 37440 88 9 6 chr12 35317039 35323135 -108959354 + L1PA6 LINE L1 32 6148 -6 220 235 53 129 chr12 35324693 35324759 -108957730 + MIR SINE MIR 50 119 -143 180 0 0 0 chr12 35324759 35324779 -108957710 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1951 149 0 0 chr12 35324784 35325065 -108957424 - AluSx SINE Alu -23 289 9 220 235 53 129 chr12 35325065 35325162 -108957327 + MIR SINE MIR 123 206 -56 200 320 0 0 chr12 35325302 35325352 -108957137 - L2 LINE L2 -6 3266 3217 347 333 27 20 chr12 35325397 35325544 -108956945 - MIR3 SINE MIR -3 205 58 2155 109 7 10 chr12 35326714 35327016 -108955473 + AluSx SINE Alu 1 301 -11 210 333 245 0 chr12 35327025 35327262 -108955227 - L2 LINE L2 -775 2539 2245 893 283 71 36 chr12 35327283 35327647 -108954842 + MLT1G LTR MaLR 13 389 -201 2042 128 40 0 chr12 35327909 35328206 -108954283 + AluSg SINE Alu 1 309 -1 321 26 0 0 chr12 35329988 35330026 -108952463 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1929 132 0 11 chr12 35330189 35330494 -108951995 + AluSx SINE Alu 5 306 0 256 148 0 0 chr12 35330805 35330821 -108951668 - LTR66 LTR ERVL -156 454 439 315 0 0 0 chr12 35330821 35330856 -108951633 + (TC)n Simple_repeat Simple_repeat 2 36 0 256 148 0 0 chr12 35330856 35330900 -108951589 - LTR66 LTR ERVL -170 440 394 264 122 0 0 chr12 35330914 35330955 -108951534 + (TA)n Simple_repeat Simple_repeat 1 41 0 287 304 30 101 chr12 35331068 35331236 -108951253 - L2 LINE L2 -1 3271 3116 361 224 0 0 chr12 35331742 35331818 -108950671 - MER34C LTR ERV1 -355 230 155 284 250 46 46 chr12 35331889 35331997 -108950492 - MER57A-int LTR ERV1 -4123 3414 3307 4799 153 33 16 chr12 35332059 35332883 -108949606 - MER57A-int LTR ERV1 -6695 842 5 645 169 0 25 chr12 35332886 35333004 -108949485 - MER57A LTR ERV1 0 403 289 34 24 0 0 chr12 35333880 35333921 -108948568 + AT_rich Low_complexity Low_complexity 1 41 0 1255 65 60 5 chr12 35333942 35334126 -108948363 - L1PA7 LINE L1 -17 6137 5944 1378 142 69 88 chr12 35335512 35335829 -108946660 - AluJo SINE Alu -1 311 1 1322 70 55 5 chr12 35336297 35336498 -108945991 + L1PA7 LINE L1 5944 6154 0 229 0 54 27 chr12 35336503 35336540 -108945949 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 348 288 78 39 chr12 35337310 35337463 -108945026 - MIR SINE MIR -89 173 15 4726 194 31 33 chr12 35337773 35339247 -108943242 + L1MB2 LINE L1 4143 5613 -558 1985 160 24 3 chr12 35339249 35339581 -108942908 + MER7A DNA MER2_type 3 339 -7 2545 180 75 0 chr12 35339582 35340104 -108942385 + L1MB2 LINE L1 5611 6171 0 2596 139 24 5 chr12 35340915 35341333 -108941156 - MSTB LTR MaLR 0 426 1 223 233 101 101 chr12 35341427 35341556 -108940933 - L2 LINE L2 -40 3273 3145 1586 280 102 43 chr12 35341850 35342760 -108939729 + L2 LINE L2 2310 3263 -50 2223 88 62 0 chr12 35342794 35343114 -108939375 + L1PA16 LINE L1 5818 6157 -9 228 269 0 0 chr12 35344525 35344577 -108937912 + MER94 DNA DNA 1 52 -82 22 35 0 0 chr12 35345824 35345853 -108936636 + AT_rich Low_complexity Low_complexity 1 29 0 4097 238 64 58 chr12 35345853 35346475 -108936014 - L1ME1 LINE L1 0 6291 5674 2143 120 47 33 chr12 35346475 35346834 -108935655 + THE1B LTR MaLR 1 364 0 11023 98 28 1 chr12 35346834 35348372 -108934117 + THE1B-int LTR MaLR 1 1580 0 2071 111 62 28 chr12 35348372 35348724 -108933765 + THE1B LTR MaLR 1 364 0 4097 238 64 58 chr12 35348724 35350638 -108931851 - L1ME1 LINE L1 -616 5675 3786 21 57 0 0 chr12 35351001 35351036 -108931453 + AT_rich Low_complexity Low_complexity 1 35 0 767 186 4 31 chr12 35351040 35351251 -108931238 - L1MC/D LINE L1 -710 5456 5257 1845 182 22 71 chr12 35352432 35352646 -108929843 - MER31A LTR ERV1 0 485 262 3328 87 11 4 chr12 35352646 35353096 -108929393 + MLT2A2 LTR ERVL 1 453 0 1845 182 22 71 chr12 35353096 35353391 -108929098 - MER31A LTR ERV1 -223 262 1 1621 204 39 75 chr12 35353442 35353858 -108928631 + LTR8 LTR ERV1 1 401 -290 320 356 49 0 chr12 35353919 35354082 -108928407 + MIR SINE MIR 82 252 -10 377 317 60 49 chr12 35354585 35354768 -108927721 + MER5A DNA MER1_type 5 189 0 318 283 22 16 chr12 35355930 35356036 -108926453 + MIR SINE MIR 13 118 -90 21 0 0 0 chr12 35356648 35356669 -108925820 + AT_rich Low_complexity Low_complexity 1 21 0 303 250 0 0 chr12 35356798 35356862 -108925627 - MIR SINE MIR -78 184 121 1415 146 35 17 chr12 35356915 35357423 -108925066 - LTR36 LTR ERV1 -30 581 9 1717 301 47 39 chr12 35357463 35358457 -108924032 + L1MA5 LINE L1 1 1910 -5299 1156 180 40 0 chr12 35358452 35358724 -108923765 + L1MA5 LINE L1 4016 4298 -2910 * 6350 142 15 26 chr12 35358731 35360210 -108922279 + L1MA5 LINE L1 5903 7357 -5 1846 142 45 54 chr12 35360539 35361191 -108921298 - Tigger3b DNA MER2_type -506 726 2 642 196 0 0 chr12 35361194 35361306 -108921183 - MLT1E3 LTR MaLR -504 120 9 24 32 0 0 chr12 35361391 35361422 -108921067 + AT_rich Low_complexity Low_complexity 1 31 0 198 224 41 20 chr12 35362368 35362417 -108920072 - L2 LINE L2 -13 3259 3210 575 289 63 20 chr12 35362647 35362997 -108919492 - L1M4 LINE L1 -2445 3701 3337 1743 149 54 69 chr12 35363191 35363599 -108918890 - L1MA9 LINE L1 0 6312 5911 6208 161 10 3 chr12 35363599 35365747 -108916742 + L1PB1 LINE L1 3985 6149 -2 262 113 19 19 chr12 35366173 35366226 -108916263 + (TA)n Simple_repeat Simple_repeat 2 54 0 550 157 0 29 chr12 35366327 35366429 -108916060 + Tigger5 DNA MER2_type 2225 2323 0 23 54 0 0 chr12 35366519 35366556 -108915933 + AT_rich Low_complexity Low_complexity 1 37 0 240 258 0 0 chr12 35367133 35367199 -108915290 - LTR37B LTR ERV1 -166 302 237 1484 251 84 25 chr12 35367234 35367709 -108914780 - LTR40a LTR ERVL -1 518 16 884 266 58 9 chr12 35367715 35368041 -108914448 - HERVL40 LTR ERVL -11 5519 2786 428 330 27 0 chr12 35368080 35368268 -108914221 - MER89-int LTR ERV1 -491 6310 6118 2040 286 58 30 chr12 35369018 35370006 -108912483 - HERVL40 LTR ERVL -882 4648 3603 706 224 25 151 chr12 35370012 35370522 -108911967 + L1M3 LINE L1 2884 3329 -2817 592 132 11 0 chr12 35370528 35370619 -108911870 + U6 snRNA snRNA 12 103 -4 14051 179 14 24 chr12 35370621 35374431 -108908058 + L1PA13 LINE L1 2397 6163 0 2219 228 18 21 chr12 35374434 35375049 -108907440 + L1M3 LINE L1 3332 3944 -2202 1538 196 9 22 chr12 35375052 35375587 -108906902 + L1M3 LINE L1 4992 5519 -661 25 75 0 0 chr12 35375653 35375706 -108906783 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr12 35375816 35375837 -108906652 + AT_rich Low_complexity Low_complexity 1 21 0 535 343 33 0 chr12 35378154 35378335 -108904154 - MIR SINE MIR -70 192 6 440 354 109 30 chr12 35378639 35379035 -108903454 + L2 LINE L2 2887 3313 0 2322 42 24 0 chr12 35379759 35380047 -108902442 - AluY SINE Alu -16 295 1 330 411 31 8 chr12 35382060 35382189 -108900300 - L2 LINE L2 -7 3265 3134 21 36 0 0 chr12 35382208 35382236 -108900253 + AT_rich Low_complexity Low_complexity 1 28 0 213 227 0 0 chr12 35382239 35382283 -108900206 - L2 LINE L2 0 3313 3270 2210 280 84 51 chr12 35383110 35384278 -108898211 - L2 LINE L2 -78 3235 2032 623 359 31 34 chr12 35385731 35386113 -108896376 - L2 LINE L2 -920 2394 2014 549 343 37 59 chr12 35386165 35386701 -108895788 - L2 LINE L2 -8 3264 2749 262 318 161 5 chr12 35386728 35386774 -108895715 - L2 LINE L2 -1226 2088 2051 342 45 0 0 chr12 35386774 35386818 -108895671 + (CA)n Simple_repeat Simple_repeat 2 45 0 262 318 161 5 chr12 35386818 35386963 -108895526 - L2 LINE L2 -1263 2051 1867 255 242 209 13 chr12 35387719 35387872 -108894617 - L2 LINE L2 -4 3309 3127 1419 314 66 36 chr12 35388176 35388774 -108893715 - L2 LINE L2 -40 3273 2694 441 254 73 49 chr12 35388774 35388979 -108893510 + MER63A DNA MER1_type 1 210 0 1419 314 66 36 chr12 35388979 35389177 -108893312 - L2 LINE L2 -619 2694 2503 2153 196 31 17 chr12 35389177 35389656 -108892833 + MER66B LTR ERV1 1 486 0 1419 314 66 36 chr12 35389656 35389866 -108892623 - L2 LINE L2 -810 2503 2222 412 335 55 15 chr12 35390652 35390852 -108891637 + Charlie8 DNA MER1_type 6 213 -2204 2268 176 21 32 chr12 35390911 35391377 -108891112 + MER65C LTR ERV1 1 461 0 296 197 0 56 chr12 35391450 35391521 -108890968 + Charlie8 DNA MER1_type 1356 1422 -995 403 237 98 127 chr12 35391837 35391989 -108890500 - LTR50 LTR ERVL -24 771 627 2033 128 0 4 chr12 35391989 35392270 -108890219 + AluSx SINE Alu 1 280 -32 403 237 98 127 chr12 35392270 35392362 -108890127 - LTR50 LTR ERVL -168 627 534 272 129 0 29 chr12 35392362 35392432 -108890057 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 1144 208 216 31 chr12 35392437 35392923 -108889566 - LTR50 LTR ERVL -213 582 7 301 312 70 50 chr12 35393107 35393510 -108888979 - MLT1J LTR MaLR -58 453 9 359 289 22 0 chr12 35394204 35394294 -108888195 + L2 LINE L2 3181 3272 0 243 65 0 0 chr12 35395476 35395507 -108886982 + L1PBa LINE L1 2929 2959 -3904 371 322 159 56 chr12 35395713 35396395 -108886094 - L2 LINE L2 -213 3059 2300 2809 271 84 36 chr12 35397587 35398914 -108883575 + L1MEc LINE L1 37 1426 -4970 1145 261 73 0 chr12 35398921 35399345 -108883144 + L1MEc LINE L1 2178 2595 -3620 1203 241 26 9 chr12 35399355 35399704 -108882785 + L1MEc LINE L1 2639 2993 -3222 622 257 22 64 chr12 35399836 35400274 -108882215 + L1ME1 LINE L1 5760 6331 -3 335 341 24 0 chr12 35400774 35400897 -108881592 + L2 LINE L2 3188 3313 0 192 77 0 0 chr12 35400957 35400983 -108881506 + (CAG)n Simple_repeat Simple_repeat 1 26 0 252 405 28 37 chr12 35401205 35401420 -108881069 + L2 LINE L2 2745 2957 -357 2358 63 26 0 chr12 35401420 35401723 -108880766 - AluY SINE Alu 0 311 1 216 250 0 0 chr12 35401812 35401852 -108880637 + (CA)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr12 35402311 35402336 -108880153 + AT_rich Low_complexity Low_complexity 1 25 0 195 190 0 0 chr12 35402336 35402394 -108880095 + (TA)n Simple_repeat Simple_repeat 2 59 0 255 141 14 28 chr12 35402427 35402498 -108879991 + CT-rich Low_complexity Low_complexity 1 70 0 2218 104 36 28 chr12 35403390 35403746 -108878743 + THE1B LTR MaLR 3 361 -3 1574 86 0 5 chr12 35404660 35404880 -108877609 - L1PA7 LINE L1 -2 6152 5934 224 366 113 32 chr12 35405030 35405216 -108877273 - MIR3 SINE MIR -3 205 5 6782 68 6 1 chr12 35406929 35407873 -108874616 + L1PA7 LINE L1 5206 6153 -1 1173 147 32 0 chr12 35409731 35409949 -108872540 + L1MA8 LINE L1 6065 6289 -2 1845 249 83 25 chr12 35409962 35410609 -108871880 + L1MC4 LINE L1 7185 7869 -173 244 285 31 54 chr12 35411326 35411456 -108871033 + L2 LINE L2 2199 2325 -989 2528 102 11 6 chr12 35411627 35411989 -108870500 + THE1B LTR MaLR 1 364 0 9791 124 21 31 chr12 35411989 35412748 -108869741 + THE1B-int LTR MaLR 1 766 -814 2304 62 0 80 chr12 35412748 35413085 -108869404 + AluY SINE Alu 1 310 -1 9791 124 21 31 chr12 35413085 35413921 -108868568 + THE1B-int LTR MaLR 766 1580 0 2337 106 49 9 chr12 35413923 35414271 -108868218 + THE1B LTR MaLR 3 364 0 382 339 45 38 chr12 35415704 35415993 -108866496 + L1MEd LINE L1 670 960 -5159 843 129 0 43 chr12 35416120 35416259 -108866230 + FLAM_C SINE Alu 1 133 0 283 328 30 38 chr12 35416345 35416476 -108866013 - MIR SINE MIR -73 189 60 877 251 122 57 chr12 35417005 35417423 -108865066 - LTR16A1 LTR ERVL -5 452 8 1757 129 85 0 chr12 35418203 35418475 -108864014 + AluSx SINE Alu 1 295 -17 32 57 0 0 chr12 35418727 35418780 -108863709 + AT_rich Low_complexity Low_complexity 1 53 0 296 332 90 41 chr12 35419042 35419310 -108863179 + L3 LINE CR1 1011 1291 -286 369 62 0 0 chr12 35419408 35419456 -108863033 + (TG)n Simple_repeat Simple_repeat 1 48 0 334 299 46 0 chr12 35419550 35419637 -108862852 - L2 LINE L2 -15 3298 3208 27 81 0 0 chr12 35420522 35420584 -108861905 + AT_rich Low_complexity Low_complexity 1 62 0 430 36 0 0 chr12 35420752 35420808 -108861681 + L1PA6 LINE L1 6099 6154 0 770 100 15 8 chr12 35420817 35420947 -108861542 + L1PA13 LINE L1 6026 6156 -7 1753 158 22 4 chr12 35420983 35421256 -108861233 + AluJb SINE Alu 1 278 -34 2183 99 0 7 chr12 35421283 35421576 -108860913 - AluSp SINE Alu -22 291 1 421 283 158 0 chr12 35422317 35422494 -108859995 - MIR SINE MIR -48 214 10 257 329 88 60 chr12 35422604 35422820 -108859669 - L2 LINE L2 -37 3235 3014 1154 128 30 0 chr12 35422844 35423047 -108859442 - L1MA8 LINE L1 -7 6284 6076 335 106 76 15 chr12 35423047 35423113 -108859376 + L1M2 LINE L1 5747 5816 -484 536 365 63 34 chr12 35423113 35423783 -108858706 - L2 LINE L2 -254 3018 2254 885 256 84 12 chr12 35423840 35424161 -108858328 - MER2 DNA MER2_type 0 344 1 307 283 22 7 chr12 35424967 35425105 -108857384 + (TA)n Simple_repeat Simple_repeat 1 140 0 2092 50 7 28 chr12 35426754 35427036 -108855453 + AluY SINE Alu 35 310 -1 2260 101 3 0 chr12 35427663 35427970 -108854519 + AluSg SINE Alu 1 308 -2 378 346 21 16 chr12 35428775 35428963 -108853526 + MER89-int LTR ERV1 2017 2205 -2442 322 301 120 0 chr12 35429382 35429515 -108852974 + MER89-int LTR ERV1 4988 5136 -1665 2471 61 0 0 chr12 35429904 35430200 -108852289 + AluY SINE Alu 1 296 -15 1342 179 50 36 chr12 35430444 35430748 -108851741 + AluJb SINE Alu 1 308 0 2218 85 0 0 chr12 35431242 35431570 -108850919 + AluY SINE Alu 1 328 0 225 0 0 0 chr12 35431813 35431838 -108850651 + (T)n Simple_repeat Simple_repeat 1 25 0 781 95 0 0 chr12 35431838 35431954 -108850535 - LTR9B LTR ERV1 -84 560 445 873 262 103 59 chr12 35432348 35432866 -108849623 - L2 LINE L2 -1 3312 2776 22 70 0 0 chr12 35432993 35433036 -108849453 + AT_rich Low_complexity Low_complexity 1 43 0 527 267 64 32 chr12 35433300 35433383 -108849106 + MIR SINE MIR 70 149 -113 3093 156 135 5 chr12 35433383 35434005 -108848484 + MER39 LTR ERV1 1 703 -4 527 267 64 32 chr12 35434005 35434108 -108848381 + MIR SINE MIR 149 262 0 28 91 0 0 chr12 35435104 35435181 -108847308 + AT_rich Low_complexity Low_complexity 1 77 0 2120 238 79 4 chr12 35437258 35437963 -108844526 - L1M4 LINE L1 -2886 3260 2503 252 262 60 0 chr12 35438351 35438435 -108844054 + L1ME LINE L1 5738 5826 -295 21 0 0 0 chr12 35438517 35438538 -108843951 + AT_rich Low_complexity Low_complexity 1 21 0 471 320 39 28 chr12 35439001 35439179 -108843310 + MIR SINE MIR 12 191 -71 22 70 0 0 chr12 35439375 35439418 -108843071 + AT_rich Low_complexity Low_complexity 1 43 0 212 278 14 0 chr12 35439955 35440027 -108842462 + (TA)n Simple_repeat Simple_repeat 2 74 0 339 285 33 53 chr12 35440928 35441079 -108841410 + L1MEc LINE L1 1508 1655 -4741 302 279 47 0 chr12 35441132 35441261 -108841228 + L1MEc LINE L1 1669 1803 -4593 21 0 0 0 chr12 35441741 35441762 -108840727 + AT_rich Low_complexity Low_complexity 1 21 0 1807 83 34 19 chr12 35442033 35442299 -108840190 - L1PA7 LINE L1 -1 6153 5884 3395 131 22 16 chr12 35442934 35443483 -108839006 - L1PA15 LINE L1 -8 6157 5606 405 350 21 7 chr12 35443488 35443631 -108838858 - MIR3 SINE MIR -62 146 2 1554 225 40 0 chr12 35443700 35444051 -108838438 + MLT1A1 LTR MaLR 1 365 0 325 254 164 30 chr12 35444590 35444755 -108837734 + MER5A DNA MER1_type 1 187 -2 27 29 0 0 chr12 35444795 35444829 -108837660 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr12 35444845 35444874 -108837615 + AT_rich Low_complexity Low_complexity 1 29 0 315 339 39 39 chr12 35445426 35445553 -108836936 + LTR67 LTR ERVL 98 224 -333 3139 201 10 63 chr12 35446343 35447069 -108835420 - LTR8 LTR ERV1 -3 688 2 3014 40 0 21 chr12 35447071 35447451 -108835038 - L1PA5 LINE L1 0 6154 5783 325 250 134 0 chr12 35447683 35447795 -108834694 + L2 LINE L2 3183 3309 -4 293 370 55 8 chr12 35447802 35447929 -108834560 + MER5A DNA MER1_type 56 188 -1 1866 160 35 0 chr12 35447974 35448262 -108834227 + AluSx SINE Alu 1 298 -14 757 279 50 46 chr12 35448296 35448619 -108833870 - MER93a LTR ERV1 -4 398 75 289 260 62 45 chr12 35448959 35449136 -108833353 - MER93b-int LTR ERV1 -667 7149 6970 1016 206 186 92 chr12 35449366 35449940 -108832549 - MER93b-int LTR ERV1 -203 4733 4106 2478 54 0 0 chr12 35449941 35450237 -108832252 + AluY SINE Alu 1 296 -15 1870 222 27 32 chr12 35450278 35450853 -108831636 - MER93b-int LTR ERV1 -1189 3747 3306 1900 209 124 107 chr12 35450879 35451912 -108830577 - MER93b-int LTR ERV1 -1786 3150 2100 2526 134 21 28 chr12 35451941 35452374 -108830115 + LTR10D LTR ERV1 84 513 0 633 219 5 37 chr12 35452498 35452685 -108829804 - MER93b-int LTR ERV1 -3072 1864 1684 381 171 92 53 chr12 35452780 35452932 -108829557 - MER93b-int LTR ERV1 -3140 3123 1476 21 57 0 0 chr12 35452966 35453001 -108829488 + AT_rich Low_complexity Low_complexity 1 35 0 285 107 92 0 chr12 35453001 35453132 -108829357 + (TA)n Simple_repeat Simple_repeat 1 143 0 382 220 99 42 chr12 35453136 35453361 -108829128 - MER93b-int LTR ERV1 -3771 1165 884 385 246 30 72 chr12 35454254 35454421 -108828068 - MER93b-int LTR ERV1 -7287 250 91 2645 42 0 0 chr12 35454422 35454733 -108827756 + AluY SINE Alu 1 311 0 525 287 65 19 chr12 35454852 35455068 -108827421 - MER93b LTR ERV1 -4 369 144 2308 81 13 0 chr12 35455070 35455377 -108827112 + AluSp SINE Alu 1 311 -2 312 288 81 0 chr12 35456248 35456359 -108826130 - L1ME LINE L1 -578 5584 5465 480 306 102 59 chr12 35456551 35456875 -108825614 - L1ME LINE L1 -2214 3932 3595 603 262 96 109 chr12 35457051 35457684 -108824805 - MLT2E LTR ERVL -3 625 1 445 299 76 82 chr12 35457708 35458364 -108824125 - L1M4 LINE L1 -2393 3753 3102 1938 253 50 30 chr12 35458760 35459162 -108823327 - L1ME3 LINE L1 -1 6161 5739 1909 174 50 31 chr12 35459162 35459582 -108822907 + MSTC LTR MaLR 1 428 0 1938 253 50 30 chr12 35459582 35459843 -108822646 - L1ME3 LINE L1 -423 5739 5485 225 304 0 43 chr12 35459859 35459928 -108822561 - MIR SINE MIR -1 261 196 1977 253 51 38 chr12 35460115 35460858 -108821631 - L1ME3A LINE L1 -111 6059 5307 1704 233 111 93 chr12 35460865 35461987 -108820502 - L1ME3A LINE L1 -913 5233 4092 372 237 126 35 chr12 35461987 35462185 -108820304 - L1ME3A LINE L1 -3449 2697 2482 245 224 30 0 chr12 35462185 35462252 -108820237 + L1MC4 LINE L1 6637 6705 -1337 299 363 34 7 chr12 35462542 35462688 -108819801 - L2 LINE L2 -678 2636 2487 387 292 225 10 chr12 35464014 35464223 -108818266 - MIR SINE MIR -2 260 7 1206 237 73 111 chr12 35465336 35465388 -108817101 + MLT1F1 LTR MaLR 3 55 -512 2394 82 0 0 chr12 35465388 35465681 -108816808 - AluSg SINE Alu -15 295 3 1206 237 73 111 chr12 35465681 35465892 -108816597 + MLT1F1 LTR MaLR 55 272 -295 1241 228 93 22 chr12 35465892 35466256 -108816233 - MLT1B LTR MaLR 0 390 1 1206 237 73 111 chr12 35466256 35466552 -108815937 + MLT1F1 LTR MaLR 272 567 0 246 275 35 106 chr12 35466642 35466685 -108815804 + LTR16A1 LTR ERVL 4 48 -409 1912 127 3 29 chr12 35466685 35467000 -108815489 - AluSx SINE Alu -5 307 1 246 275 35 106 chr12 35467000 35467098 -108815391 + LTR16A1 LTR ERVL 48 135 -322 326 61 20 0 chr12 35468347 35468396 -108814093 + (TG)n Simple_repeat Simple_repeat 2 51 0 1769 119 48 7 chr12 35469843 35470112 -108812377 + AluSx SINE Alu 28 307 -5 29 0 0 0 chr12 35470247 35470276 -108812213 + AT_rich Low_complexity Low_complexity 1 29 0 383 256 69 115 chr12 35470834 35471182 -108811307 - HAL1 LINE L1 -1233 1274 943 888 248 40 25 chr12 35472369 35472643 -108809846 + L1ME1 LINE L1 5614 5891 -275 224 304 38 25 chr12 35472833 35472912 -108809577 + L2 LINE L2 3185 3264 -8 1610 234 56 14 chr12 35472941 35473461 -108809028 + MLT1E LTR MaLR 13 585 -8 250 62 62 42 chr12 35473713 35473761 -108808728 + L1PA13 LINE L1 6114 6162 -1 184 333 64 0 chr12 35474243 35474321 -108808168 + MIR SINE MIR 102 184 -78 1811 132 53 4 chr12 35476534 35476815 -108805674 - AluJb SINE Alu -17 295 1 674 139 80 94 chr12 35477896 35477942 -108804547 + LTR37A LTR ERV1 1 46 -380 2474 47 0 3 chr12 35477942 35478243 -108804246 - AluY SINE Alu -11 300 1 674 139 80 94 chr12 35478243 35478397 -108804092 + LTR37A LTR ERV1 46 198 -228 1386 207 85 0 chr12 35478429 35478757 -108803732 + MER67C LTR ERV1 9 364 -346 213 290 0 32 chr12 35478895 35478957 -108803532 + CT-rich Low_complexity Low_complexity 5 64 0 4023 102 11 86 chr12 35479039 35479757 -108802732 + MER4A LTR ERV1 1 664 0 371 165 63 0 chr12 35480693 35480772 -108801717 - MER34 LTR ERV1 -1 541 458 299 196 0 0 chr12 35480766 35480817 -108801672 - MER39 LTR ERV1 -656 51 1 * 22 0 0 0 chr12 35480940 35480962 -108801527 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr12 35481306 35481345 -108801144 + AT_rich Low_complexity Low_complexity 1 39 0 253 265 75 35 chr12 35481996 35482196 -108800293 - L1ME4a LINE L1 -4 6117 5910 230 229 0 105 chr12 35482248 35482353 -108800136 - L1ME4a LINE L1 -213 5908 5815 2196 117 0 0 chr12 35482424 35482722 -108799767 - AluSq SINE Alu -15 298 1 395 253 0 0 chr12 35482728 35482819 -108799670 - L1ME4a LINE L1 -512 5609 5519 508 269 48 18 chr12 35483204 35483371 -108799118 + MLT1I LTR MaLR 3 174 -235 233 342 56 25 chr12 35483407 35483568 -108798921 + MLT1I LTR MaLR 244 409 0 3481 91 5 58 chr12 35484015 35484587 -108797902 + L1PA13 LINE L1 5620 6161 -2 311 250 93 73 chr12 35484591 35484764 -108797725 + MLT1G LTR MaLR 114 354 -236 1127 171 18 18 chr12 35484764 35484992 -108797497 - L1MB3 LINE L1 0 6183 5956 311 250 93 73 chr12 35484992 35485077 -108797412 + MLT1G LTR MaLR 354 436 -154 801 161 23 0 chr12 35485524 35485654 -108796835 + FLAM_C SINE Alu 1 133 -10 520 325 61 39 chr12 35485933 35486293 -108796196 + MLT1I LTR MaLR 42 409 0 1712 187 36 17 chr12 35487075 35487433 -108795056 - MLT1A1 LTR MaLR 0 365 1 206 277 0 31 chr12 35488346 35488411 -108794078 - L2 LINE L2 -1896 1418 1356 24 67 0 0 chr12 35488972 35489017 -108793472 + AT_rich Low_complexity Low_complexity 1 45 0 6705 135 7 16 chr12 35489022 35489197 -108793292 - L1MA2 LINE L1 0 6304 6129 2348 109 0 3 chr12 35489197 35489510 -108792979 - AluSp SINE Alu -1 312 1 6705 135 7 16 chr12 35489510 35491414 -108791075 - L1MA2 LINE L1 -175 6129 4243 1891 208 20 3 chr12 35491424 35491780 -108790709 - LTR3 LTR ERVK -70 362 1 371 167 0 15 chr12 35491794 35491860 -108790629 - HERVK14 LTR ERVK -61 5884 5820 1089 183 5 5 chr12 35491876 35492089 -108790400 - HERVK14 LTR ERVK -1758 5485 5273 586 114 0 0 chr12 35492090 35492178 -108790311 - AluY SINE Alu -222 88 1 481 244 25 8 chr12 35492179 35492298 -108790191 - L1MCa LINE L1 -4244 2182 2062 252 0 0 0 chr12 35493202 35493230 -108789259 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 273 262 130 63 chr12 35493770 35494063 -108788426 + Charlie8 DNA MER1_type 26 1428 -989 327 342 58 64 chr12 35494964 35495341 -108787148 + HAL1b LINE L1 538 912 -436 324 241 61 70 chr12 35496130 35496358 -108786131 + L1M4 LINE L1 2784 3009 -3137 21 57 0 0 chr12 35496378 35496413 -108786076 + AT_rich Low_complexity Low_complexity 1 35 0 439 268 31 31 chr12 35496413 35496540 -108785949 + L2 LINE L2 3187 3313 0 257 204 0 17 chr12 35496855 35496931 -108785558 + L1M4 LINE L1 5771 5845 -319 * 978 241 159 25 chr12 35496927 35497426 -108785063 + L1ME3 LINE L1 5270 5838 -324 383 320 125 0 chr12 35497441 35497641 -108784848 + L1ME3 LINE L1 5898 6122 -40 1844 245 26 32 chr12 35497756 35498294 -108784195 + L1ME1 LINE L1 5614 6148 -18 292 188 14 14 chr12 35498330 35498399 -108784090 + L1MA10 LINE L1 6236 6304 -30 * 1788 181 58 17 chr12 35498397 35499006 -108783483 - L1ME LINE L1 -626 5540 4902 261 155 17 17 chr12 35499010 35499068 -108783421 + L1ME3A LINE L1 6111 6168 -2 350 301 143 36 chr12 35499998 35500194 -108782295 + L1MC/D LINE L1 5509 5725 -2083 195 129 0 0 chr12 35500210 35500241 -108782248 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 304 297 54 9 chr12 35501734 35501845 -108780644 + MIR3 SINE MIR 89 204 -4 395 236 27 0 chr12 35501951 35502061 -108780428 - L1MC5 LINE L1 -48 7913 7801 625 249 121 8 chr12 35502099 35502348 -108780141 - L1MB8 LINE L1 -8 6170 5894 30 45 0 0 chr12 35503218 35503262 -108779227 + AT_rich Low_complexity Low_complexity 1 44 0 258 324 61 56 chr12 35504426 35504639 -108777850 - MIR SINE MIR -48 214 1 22 0 0 0 chr12 35504747 35504769 -108777720 + AT_rich Low_complexity Low_complexity 1 22 0 295 327 53 68 chr12 35504928 35505267 -108777222 - L2 LINE L2 -498 2816 2483 2189 119 0 0 chr12 35507519 35507813 -108774676 - AluSg SINE Alu -16 294 1 825 301 56 25 chr12 35507906 35508351 -108774138 - L1MEc LINE L1 -4583 1813 1355 676 208 63 79 chr12 35508346 35508726 -108773763 - L1MEc LINE L1 -3933 2463 2090 * 442 321 127 9 chr12 35509136 35509719 -108772770 - L1M4 LINE L1 -1198 4948 4297 211 225 0 0 chr12 35509800 35509840 -108772649 + (CATA)n Simple_repeat Simple_repeat 3 42 0 27 0 0 0 chr12 35510809 35510836 -108771653 + AT_rich Low_complexity Low_complexity 1 27 0 1496 60 0 37 chr12 35513662 35513878 -108768611 + L1PA5 LINE L1 5943 6150 -4 2568 171 133 30 chr12 35514056 35514660 -108767829 + MER39 LTR ERV1 16 681 -26 394 261 92 46 chr12 35516234 35516387 -108766102 - MER5B DNA MER1_type 0 178 19 334 277 47 61 chr12 35516387 35516535 -108765954 - MER5B DNA MER1_type -26 152 7 27 0 0 0 chr12 35516767 35516794 -108765695 + AT_rich Low_complexity Low_complexity 1 27 0 1138 229 100 32 chr12 35516862 35517233 -108765256 - MSTD LTR MaLR 0 396 1 254 312 13 0 chr12 35517255 35517332 -108765157 - MIR SINE MIR -57 151 74 2260 116 0 0 chr12 35518304 35518607 -108763882 - AluSx SINE Alu -9 303 1 274 236 14 28 chr12 35519122 35519194 -108763295 - L2 LINE L2 0 3313 3243 288 130 0 0 chr12 35520229 35520275 -108762214 + (CA)n Simple_repeat Simple_repeat 1 46 0 17209 127 8 3 chr12 35520549 35524061 -108758428 - L1PA8A LINE L1 -3 6128 2604 606 179 0 0 chr12 35524061 35524156 -108758333 - LTR12 LTR ERV1 -261 453 359 275 240 80 0 chr12 35524156 35524231 -108758258 - LTR30 LTR ERV1 -98 624 544 661 124 14 197 chr12 35524231 35524449 -108758040 - LTR12 LTR ERV1 -437 277 100 234 269 0 0 chr12 35524472 35524524 -108757965 - LTR30 LTR ERV1 -670 52 1 8531 203 6 29 chr12 35524525 35526213 -108756276 - L1P LINE L1 -3506 2640 1003 216 67 0 0 chr12 35526213 35526243 -108756246 + (TTG)n Simple_repeat Simple_repeat 1 30 0 8531 203 6 29 chr12 35526243 35526543 -108755946 - L1P LINE L1 -5143 1003 698 193 425 116 20 chr12 35528602 35528955 -108753534 + L2 LINE L2 2871 3257 -15 225 0 0 0 chr12 35528955 35528980 -108753509 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 192 148 0 0 chr12 35529193 35529220 -108753269 - L2 LINE L2 -20 3293 3267 22 0 0 0 chr12 35529256 35529278 -108753211 + AT_rich Low_complexity Low_complexity 1 22 0 834 235 156 26 chr12 35530244 35530738 -108751751 - L1MCa LINE L1 -5056 1885 1328 1789 191 36 3 chr12 35530790 35531177 -108751312 - L1MB4 LINE L1 0 6180 5781 217 143 36 18 chr12 35531177 35531227 -108751262 + (TA)n Simple_repeat Simple_repeat 1 51 0 328 241 46 11 chr12 35531230 35531317 -108751172 + L1MC4 LINE L1 6613 6702 -1340 313 207 0 0 chr12 35531319 35531377 -108751112 - L1MB4 LINE L1 -384 5787 5730 629 271 98 11 chr12 35531386 35531652 -108750837 - L1MCa LINE L1 -5156 1267 979 11377 214 54 35 chr12 35531903 35532345 -108750144 + L1MA9 LINE L1 2983 3415 -4150 16238 25 1 0 chr12 35532345 35535024 -108747465 + L1PA2 LINE L1 3476 6155 0 11377 214 54 35 chr12 35535024 35535180 -108747309 + L1MA9 LINE L1 3415 3567 -3998 198 0 0 0 chr12 35535180 35535202 -108747287 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 11377 214 54 35 chr12 35535202 35537911 -108744578 + L1MA9 LINE L1 3567 6364 -1201 1824 161 0 7 chr12 35537911 35538223 -108744266 + AluSx SINE Alu 1 310 0 11377 214 54 35 chr12 35538223 35538638 -108743851 + L1MA9 LINE L1 6364 6770 -795 251 167 0 20 chr12 35538663 35538728 -108743761 + L1MA9 LINE L1 7315 7375 -335 243 128 0 0 chr12 35538745 35538784 -108743705 + L1MA9 LINE L1 7362 7400 -331 587 155 86 0 chr12 35538784 35538900 -108743589 + L1MA9 LINE L1 7362 7487 -244 1924 164 137 8 chr12 35539051 35539430 -108743059 + MSTA LTR MaLR 1 428 0 9123 146 23 24 chr12 35539432 35541012 -108741477 + MSTA-int LTR MaLR 3 1580 0 1296 187 83 37 chr12 35541012 35541360 -108741129 + THE1B LTR MaLR 1 364 0 326 325 69 75 chr12 35541705 35542081 -108740408 - L1MC4a LINE L1 -1908 5900 5527 204 261 0 15 chr12 35542374 35542439 -108740050 + CT-rich Low_complexity Low_complexity 2 65 0 1675 126 103 0 chr12 35544123 35544385 -108738104 + AluSc SINE Alu 1 289 -20 237 170 64 11 chr12 35546727 35546821 -108735668 + (TA)n Simple_repeat Simple_repeat 2 100 0 678 169 40 0 chr12 35546822 35546970 -108735519 + L1M LINE L1 5269 5422 -742 1634 183 0 0 chr12 35548080 35548369 -108734120 - L1PA15 LINE L1 -196 5969 5681 1077 217 18 0 chr12 35548364 35548590 -108733899 - L1PA15 LINE L1 -1166 4980 4751 * 774 316 120 40 chr12 35548587 35549430 -108733059 - L1PA13 LINE L1 -5360 1427 445 * 419 75 0 0 chr12 35549438 35549490 -108732999 - THE1B LTR MaLR 0 364 313 2501 78 11 242 chr12 35549490 35549937 -108732552 - LTR14B LTR ERVK 0 608 1 1832 145 45 10 chr12 35549937 35550247 -108732242 - THE1B LTR MaLR -43 321 1 2081 251 14 2 chr12 35550255 35550682 -108731807 - L1PA13 LINE L1 -6355 432 1 4900 211 23 11 chr12 35550696 35551893 -108730596 - L1 LINE L1 -2579 3567 2357 1384 206 99 14 chr12 35551895 35552260 -108730229 - MSTD LTR MaLR 0 396 1 4377 256 75 31 chr12 35552264 35553846 -108728643 - MSTD-int LTR MaLR -4 1731 83 589 172 152 0 chr12 35553842 35553987 -108728502 + L1MA9 LINE L1 6146 6312 0 * 495 176 0 0 chr12 35554144 35554229 -108728260 - MER67D LTR ERV1 -429 85 1 575 29 0 0 chr12 35554406 35554475 -108728014 + L1PA4 LINE L1 6079 6147 -8 819 281 0 5 chr12 35554677 35554873 -108727616 + L1ME1 LINE L1 5967 6161 -5 23 0 0 0 chr12 35555204 35555227 -108727262 + AT_rich Low_complexity Low_complexity 1 23 0 2198 89 7 10 chr12 35555238 35555529 -108726960 + AluSc SINE Alu 1 290 -19 774 242 45 10 chr12 35555604 35555802 -108726687 + MLT1E3 LTR MaLR 1 205 -419 306 326 98 16 chr12 35556304 35556488 -108726001 - MLT1L LTR MaLR -221 394 196 2573 232 31 70 chr12 35557579 35558852 -108723637 + L1ME1 LINE L1 4942 6160 -6 1527 208 170 0 chr12 35559254 35559643 -108722846 + MSTB2 LTR MaLR 3 457 0 3104 173 28 33 chr12 35560475 35561198 -108721291 + MER54B LTR ERVL 3 793 0 388 261 168 26 chr12 35561311 35561537 -108720952 + L1ME3 LINE L1 5859 6116 -46 21 36 0 0 chr12 35561630 35561658 -108720831 + AT_rich Low_complexity Low_complexity 1 28 0 713 132 0 0 chr12 35562582 35562688 -108719801 - L1PA16 LINE L1 -171 5995 5890 973 183 0 27 chr12 35562688 35562873 -108719616 + L1PA16 LINE L1 5986 6166 0 267 343 28 56 chr12 35565086 35565229 -108717260 + MIR SINE MIR 20 158 -104 279 323 15 0 chr12 35565236 35565301 -108717188 + MIR SINE MIR 3 68 -194 1116 221 29 4 chr12 35566318 35566599 -108715890 + L1ME1 LINE L1 4668 4955 -1191 2651 269 56 5 chr12 35566601 35567427 -108715062 + L1ME1 LINE L1 5294 6161 -5 210 323 77 8 chr12 35567535 35567665 -108714824 - MIR SINE MIR -56 206 68 846 262 137 4 chr12 35567797 35568068 -108714421 - MLT1J2 LTR MaLR -139 311 5 194 61 0 30 chr12 35568471 35568504 -108713985 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 1441 6 0 0 chr12 35568520 35568681 -108713808 - L1PA4 LINE L1 -300 5855 5695 1031 16 0 0 chr12 35568675 35568801 -108713688 + L1P1 LINE L1 5358 5483 -672 * 1272 81 5 0 chr12 35571217 35571402 -108711087 - L1P LINE L1 -3665 2481 2296 943 228 13 43 chr12 35571834 35572066 -108710423 + Charlie1a DNA MER1_type 2 226 -1229 394 297 42 80 chr12 35572190 35572453 -108710036 + L1MC4a LINE L1 5716 5968 -153 2061 154 9 0 chr12 35572552 35572889 -108709600 - L1PA15 LINE L1 -7 6158 5819 40095 69 34 2 chr12 35573737 35579712 -108702777 - L1PA13 LINE L1 -7 6156 5 366 198 58 0 chr12 35579714 35579835 -108702654 + L1 LINE L1 3396 3523 -2623 746 222 47 18 chr12 35579835 35580006 -108702483 + THE1B LTR MaLR 1 176 -188 11767 124 26 38 chr12 35580128 35583140 -108699349 - L1P3 LINE L1 -3444 3017 8 8705 182 19 8 chr12 35583263 35585801 -108696688 - L1PA13 LINE L1 -2 6161 3603 277 312 49 29 chr12 35585910 35586115 -108696374 - Tigger4(Zombi) DNA MER2_type -1332 1399 1191 390 306 92 30 chr12 35586341 35586677 -108695812 - Tigger4(Zombi) DNA MER2_type -1747 984 628 2858 66 129 2 chr12 35587195 35587589 -108694900 - MLT2A1 LTR ERVL 0 444 1 342 218 40 20 chr12 35587853 35587954 -108694535 - MER46C DNA MER2_type -229 109 7 315 341 69 6 chr12 35587969 35588142 -108694347 + L1M4 LINE L1 2441 2624 -3522 2639 98 42 2 chr12 35588209 35588615 -108693874 + L1MA2 LINE L1 5883 6304 0 22 35 0 0 chr12 35588789 35588818 -108693671 + AT_rich Low_complexity Low_complexity 1 29 0 1398 272 13 27 chr12 35588905 35589460 -108693029 + L1MC/D LINE L1 2325 2871 -3275 304 246 0 0 chr12 35589492 35589553 -108692936 + L1MC/D LINE L1 5671 5731 -628 1507 58 11 0 chr12 35589764 35589954 -108692535 - L1PA7 LINE L1 -15 6139 5948 719 278 70 26 chr12 35591757 35592027 -108690462 + LTR16A LTR ERVL 76 357 -93 627 110 0 10 chr12 35592817 35592917 -108689572 - L1PA10 LINE L1 -1 6167 6069 21 57 0 0 chr12 35593464 35593499 -108688990 + AT_rich Low_complexity Low_complexity 1 35 0 322 290 85 17 chr12 35593515 35593691 -108688798 - LTR67 LTR ERVL -16 541 354 202 383 35 30 chr12 35594003 35594233 -108688256 - L2 LINE L2 -1964 1350 1120 217 343 86 0 chr12 35594432 35594537 -108687952 - L2 LINE L2 -2486 828 715 2297 109 0 0 chr12 35594595 35594897 -108687592 + AluSg SINE Alu 1 302 -8 525 222 22 0 chr12 35596110 35596245 -108686244 + L1MA8 LINE L1 6144 6281 -10 2572 178 16 0 chr12 35596589 35597078 -108685411 + L1PA8 LINE L1 2599 3095 -3051 212 190 121 17 chr12 35597946 35598004 -108684485 + L2 LINE L2 2304 2367 -947 1516 262 77 14 chr12 35598179 35598687 -108683802 - L1MC4 LINE L1 -258 7784 7245 2354 231 34 12 chr12 35598703 35599284 -108683205 - L1MC4 LINE L1 -958 7084 6491 224 258 0 30 chr12 35600142 35600208 -108682281 + GA-rich Low_complexity Low_complexity 2 65 0 340 234 0 26 chr12 35601691 35601768 -108680721 + MER5A DNA MER1_type 16 90 -99 693 329 96 23 chr12 35602395 35602781 -108679708 + LTR16B LTR ERVL 37 450 -14 2426 145 14 3 chr12 35603934 35604483 -108678006 + L1PA8 LINE L1 3989 6172 0 * 5678 166 20 6 chr12 35604476 35606449 -108676040 + L1PB2 LINE L1 4151 6150 -1 270 0 0 0 chr12 35607182 35607212 -108675277 + (TG)n Simple_repeat Simple_repeat 2 31 0 982 224 41 4 chr12 35608735 35609033 -108673456 + L1ME1 LINE L1 5120 5424 -742 * 1229 244 85 46 chr12 35609029 35609546 -108672943 + L1ME1 LINE L1 5625 6161 -5 2532 222 6 5 chr12 35609621 35610287 -108672202 + L1PB1 LINE L1 4370 5036 -1110 5326 125 18 38 chr12 35610445 35611598 -108670891 + L1PB1 LINE L1 5021 6151 0 26 30 0 0 chr12 35611650 35611683 -108670806 + AT_rich Low_complexity Low_complexity 1 33 0 204 97 0 0 chr12 35611948 35611979 -108670510 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 291 29 34 chr12 35613643 35613818 -108668671 - L1M4 LINE L1 -816 5330 5157 41490 48 2 1 chr12 35613847 35619324 -108663165 + L1P1 LINE L1 2 5483 -672 2307 177 11 11 chr12 35619488 35619946 -108662543 + L1MC1 LINE L1 5858 6315 -18 947 256 14 14 chr12 35620830 35621107 -108661382 + L1ME3A LINE L1 5887 6163 -7 2612 216 31 3 chr12 35622479 35623117 -108659372 - L1 LINE L1 -3198 2948 2293 3443 222 25 5 chr12 35623121 35623658 -108658831 + L1 LINE L1 2951 3515 -2631 189 0 0 0 chr12 35623658 35623679 -108658810 + (TAA)n Simple_repeat Simple_repeat 1 21 0 3443 222 25 5 chr12 35623679 35624081 -108658408 + L1 LINE L1 3515 3908 -2238 831 273 159 62 chr12 35625880 35626016 -108656473 - L2 LINE L2 -1345 1969 1848 378 0 0 0 chr12 35626016 35626058 -108656431 + (TA)n Simple_repeat Simple_repeat 2 43 0 831 273 159 62 chr12 35626058 35626488 -108656001 - L2 LINE L2 -1466 1848 1348 1817 225 126 14 chr12 35627409 35628141 -108654348 - L1ME3 LINE L1 -189 5973 5150 608 244 58 24 chr12 35628563 35628768 -108653721 + MLT1J LTR MaLR 293 504 -7 2089 68 4 0 chr12 35629791 35630057 -108652432 - AluY SINE Alu -44 267 1 1875 150 7 3 chr12 35630059 35630352 -108652137 - AluSx SINE Alu -17 295 2 406 234 9 9 chr12 35630862 35630969 -108651520 - MLT1J2 LTR MaLR -339 111 5 280 347 10 0 chr12 35631255 35631353 -108651136 + MIR SINE MIR 53 151 -111 7299 41 1 1 chr12 35631363 35632492 -108649997 + L1PA4 LINE L1 5025 6153 -2 331 321 123 48 chr12 35632585 35632918 -108649571 - L1ME3 LINE L1 -1161 4985 4628 502 241 43 0 chr12 35633019 35633135 -108649354 + L1MD2 LINE L1 6000 6120 -239 5380 158 11 5 chr12 35633378 35634358 -108648131 - L1MC1 LINE L1 -9 6324 5339 2621 150 62 0 chr12 35634577 35635016 -108647473 + LTR28 LTR ERV1 1 466 -554 529 198 10 0 chr12 35635014 35635115 -108647374 + LTR28 LTR ERV1 919 1020 0 * 234 189 24 55 chr12 35636315 35636442 -108646047 + (TATAA)n Simple_repeat Simple_repeat 5 127 0 27 29 0 0 chr12 35637537 35637571 -108644918 + AT_rich Low_complexity Low_complexity 1 34 0 2140 130 3 0 chr12 35637718 35638017 -108644472 - AluY SINE Alu -11 300 1 761 257 11 42 chr12 35638450 35638715 -108643774 + MER46C DNA MER2_type 66 322 -16 316 331 31 8 chr12 35638944 35639074 -108643415 + L2 LINE L2 2670 2802 -512 262 381 32 16 chr12 35639111 35639300 -108643189 + L2 LINE L2 2857 3048 -224 5355 146 31 18 chr12 35639584 35640825 -108641664 - L1MA6 LINE L1 0 6300 5046 2192 130 0 0 chr12 35640829 35641130 -108641359 - AluSq SINE Alu -12 301 1 2034 120 7 0 chr12 35642383 35642682 -108639807 - THE1B LTR MaLR -63 301 1 10132 116 25 41 chr12 35642682 35644288 -108638201 - THE1B-int LTR MaLR 0 1580 1 2265 146 6 0 chr12 35644288 35644650 -108637839 - THE1B LTR MaLR 0 364 1 1690 255 20 16 chr12 35644654 35645105 -108637384 + LTR40a LTR ERVL 67 519 0 2423 184 45 4 chr12 35645621 35646136 -108636353 - L1MB1 LINE L1 0 6168 5633 6446 12 0 0 chr12 35647090 35647815 -108634674 + L1PA2 LINE L1 5431 6155 0 278 297 47 27 chr12 35648679 35648827 -108633662 + L1M3c LINE L1 1 151 -5990 306 390 21 5 chr12 35648830 35649020 -108633469 + L1M3c LINE L1 223 415 -5726 658 105 137 8 chr12 35649395 35649519 -108632970 + L1MA9 LINE L1 5789 5928 -384 2424 140 0 11 chr12 35649519 35649898 -108632591 + THE1C LTR MaLR 1 375 0 2446 99 8 3 chr12 35649898 35650271 -108632218 + THE1C-int LTR MaLR 1 375 -1205 17059 110 16 8 chr12 35650280 35653719 -108628770 - L1PA7 LINE L1 -1 6153 2687 577 290 29 7 chr12 35653954 35654230 -108628259 - L1M1 LINE L1 -4383 3182 2901 1375 119 45 34 chr12 35654259 35654528 -108627961 - L1MA2 LINE L1 -8 6296 6025 9787 204 29 8 chr12 35654513 35656762 -108625727 - L1 LINE L1 -1214 6351 4054 1221 184 68 8 chr12 35656762 35657012 -108625477 + MSTA LTR MaLR 1 265 -163 9362 123 13 3 chr12 35657015 35658367 -108624122 - THE1C-int LTR MaLR -215 1365 1 1887 160 35 19 chr12 35658367 35658736 -108623753 - THE1C LTR MaLR 0 375 1 703 214 7 7 chr12 35658737 35658891 -108623598 + MSTA-int LTR MaLR 1427 1580 0 1798 169 102 8 chr12 35658891 35659282 -108623207 + MSTA LTR MaLR 1 428 0 12355 166 81 23 chr12 35659282 35662059 -108620430 - L1 LINE L1 -3507 4058 1103 480 148 41 41 chr12 35662053 35662175 -108620314 - L1 LINE L1 -7430 135 14 * 3830 230 30 27 chr12 35662177 35663179 -108619310 - L1M4c LINE L1 -4516 2137 1406 1985 134 3 3 chr12 35663179 35663507 -108618982 + AluSg SINE Alu 2 329 0 3830 230 30 27 chr12 35663507 35663721 -108618768 - L1M4c LINE L1 -5247 1406 1194 461 311 76 48 chr12 35663992 35664243 -108618246 + MIR SINE MIR 1 258 -4 256 313 48 0 chr12 35664946 35665029 -108617460 - MIR SINE MIR -175 87 1 357 273 87 43 chr12 35666092 35666253 -108616236 - MIR SINE MIR -46 216 49 27 49 0 0 chr12 35666321 35666362 -108616127 + AT_rich Low_complexity Low_complexity 1 41 0 363 293 24 32 chr12 35666577 35666700 -108615789 + L2 LINE L2 3192 3313 0 24 32 0 0 chr12 35666751 35666782 -108615707 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr12 35666949 35666986 -108615503 + AT_rich Low_complexity Low_complexity 1 37 0 457 238 0 0 chr12 35667621 35667726 -108614763 - L1MEc LINE L1 -5561 835 731 302 189 15 61 chr12 35667727 35667859 -108614630 + (CATATA)n Simple_repeat Simple_repeat 1 126 0 307 211 14 0 chr12 35668860 35668931 -108613558 - MIR SINE MIR -14 248 177 412 342 89 5 chr12 35668957 35669147 -108613342 + MIR SINE MIR 51 256 -6 2113 78 7 3 chr12 35669175 35669459 -108613030 - AluY SINE Alu -26 285 1 21 36 0 0 chr12 35670598 35670626 -108611863 + AT_rich Low_complexity Low_complexity 1 28 0 208 0 62 0 chr12 35670822 35670854 -108611635 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1863 18 5 0 chr12 35670854 35671075 -108611414 - L1PA4 LINE L1 -18 6137 5916 22 0 0 0 chr12 35671604 35671626 -108610863 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 35671883 35671904 -108610585 + AT_rich Low_complexity Low_complexity 1 21 0 928 133 9 81 chr12 35672085 35672296 -108610193 + L1M1 LINE L1 3021 3216 -4349 1171 269 5 33 chr12 35672297 35672691 -108609798 - L2 LINE L2 -2284 1030 648 1910 75 0 0 chr12 35673212 35673464 -108609025 - L1PA7 LINE L1 -3 6151 5900 556 76 0 0 chr12 35673722 35673801 -108608688 - L1MC/D LINE L1 -902 5431 5353 * 13697 213 29 25 chr12 35673793 35674248 -108608241 - L1PA7 LINE L1 -1 6153 5701 282 56 0 0 chr12 35674248 35674284 -108608205 + (CA)n Simple_repeat Simple_repeat 2 37 0 13697 213 29 25 chr12 35674284 35674469 -108608020 - L1PA7 LINE L1 -453 5701 5518 180 0 0 0 chr12 35674469 35674489 -108608000 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 13697 213 29 25 chr12 35674489 35677198 -108605291 - L1PA7 LINE L1 -636 5518 2773 1948 83 93 17 chr12 35677198 35677487 -108605002 - AluY SINE Alu 0 311 1 13697 213 29 25 chr12 35677487 35678000 -108604489 - L1PA7 LINE L1 -3381 2773 2264 6113 237 35 13 chr12 35678011 35679990 -108602499 - L1MC/D LINE L1 -743 5403 3580 22 0 0 0 chr12 35680751 35680773 -108601716 + AT_rich Low_complexity Low_complexity 1 22 0 3252 245 100 54 chr12 35681753 35683188 -108599301 - L1MC4 LINE L1 -13 8029 6528 2010 248 75 57 chr12 35683244 35684215 -108598274 - L1ME2 LINE L1 -14 6150 5197 2337 91 10 0 chr12 35684215 35684524 -108597965 - AluSp SINE Alu -1 312 1 2010 248 75 57 chr12 35684524 35684938 -108597551 - L1ME2 LINE L1 -967 5197 4792 2429 57 7 3 chr12 35684938 35685239 -108597250 - AluY SINE Alu -9 302 1 2010 248 75 57 chr12 35685239 35685680 -108596809 - L1ME2 LINE L1 -1372 4792 4253 6997 54 2 3 chr12 35686021 35687255 -108595234 + L1PA5 LINE L1 4915 6147 -7 2233 277 91 16 chr12 35687266 35688190 -108594299 + L2 LINE L2 2205 3215 -98 206 339 121 0 chr12 35688686 35688810 -108593679 + MIR SINE MIR 49 187 -75 714 261 28 0 chr12 35689488 35689668 -108592821 - MIR SINE MIR -48 214 30 254 319 0 33 chr12 35690509 35690600 -108591889 - L2 LINE L2 -1 3312 3225 194 61 0 30 chr12 35690780 35690813 -108591676 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 1439 6 0 0 chr12 35690829 35690990 -108591499 - L1PA3 LINE L1 -300 5855 5695 1031 16 0 0 chr12 35690984 35691110 -108591379 + L1P1 LINE L1 5358 5483 -672 * 1273 81 5 0 chr12 35693527 35693712 -108588777 - L1P LINE L1 -3665 2481 2296 307 211 14 0 chr12 35693904 35693975 -108588514 - MIR SINE MIR -14 248 177 412 342 89 5 chr12 35694001 35694191 -108588298 + MIR SINE MIR 51 256 -6 2249 74 0 0 chr12 35694219 35694504 -108587985 - AluY SINE Alu -26 285 1 241 277 128 11 chr12 35694511 35694605 -108587884 - MIR SINE MIR -106 156 52 2471 242 13 32 chr12 35696199 35696752 -108585737 + MLT2B3 LTR ERVL 5 546 -8 1972 91 4 0 chr12 35697698 35697951 -108584538 + AluSp SINE Alu 51 304 -9 752 278 4 18 chr12 35698192 35698419 -108584070 + MER58A DNA MER1_type 1 224 0 447 330 17 23 chr12 35698460 35698633 -108583856 - MIR SINE MIR -14 248 77 210 37 0 0 chr12 35698792 35698819 -108583670 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 301 328 56 22 chr12 35699703 35699883 -108582606 + L1ME4a LINE L1 5935 6120 -1 201 140 53 0 chr12 35699942 35699999 -108582490 + (TA)n Simple_repeat Simple_repeat 2 61 0 210 184 0 20 chr12 35700005 35700054 -108582435 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 427 266 50 69 chr12 35700404 35700765 -108581724 + L1MC4a LINE L1 542 895 -5175 7929 167 8 4 chr12 35700771 35702187 -108580302 - L1PA10 LINE L1 -3127 3019 1599 13109 150 16 7 chr12 35702187 35705286 -108577203 + L1PA10 LINE L1 3037 6156 -12 24 0 0 0 chr12 35705286 35705310 -108577179 + AT_rich Low_complexity Low_complexity 1 24 0 1023 336 53 30 chr12 35705310 35706306 -108576183 + L1MC4a LINE L1 920 1938 -4323 327 282 0 9 chr12 35706462 35706572 -108575917 + L1MC4a LINE L1 2080 2188 -4073 1193 270 30 44 chr12 35706612 35707182 -108575307 + L1MC4a LINE L1 3575 4136 -1944 243 128 0 0 chr12 35707245 35707292 -108575197 + L1MC4 LINE L1 6659 6705 -1337 * 719 83 0 19 chr12 35707288 35707396 -108575093 + L1P4 LINE L1 5597 5702 -466 606 48 37 75 chr12 35707404 35707591 -108574898 + (TA)n Simple_repeat Simple_repeat 1 180 0 615 114 54 0 chr12 35707651 35707817 -108574672 + (TA)n Simple_repeat Simple_repeat 2 176 0 664 232 21 7 chr12 35707817 35707959 -108574530 - MER58A DNA MER1_type 0 162 19 1600 273 52 32 chr12 35707983 35708423 -108574066 + L1MC4a LINE L1 4188 4655 -1425 2451 62 7 3 chr12 35708423 35708728 -108573761 + AluY SINE Alu 1 306 -5 1600 273 52 32 chr12 35708728 35709129 -108573360 + L1MC4a LINE L1 4655 5046 -1034 2182 89 17 3 chr12 35709138 35709430 -108573059 + AluSp SINE Alu 1 296 -17 183 80 0 0 chr12 35709476 35709501 -108572988 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 1402 294 29 42 chr12 35710363 35711347 -108571142 + L1MEc LINE L1 1380 2311 -3904 256 266 0 0 chr12 35711350 35711414 -108571075 + L1MEc LINE L1 3699 3762 -2453 869 182 13 7 chr12 35711723 35711877 -108570612 - FRAM SINE Alu -11 155 1 943 228 13 43 chr12 35713039 35713271 -108569218 + Charlie1a DNA MER1_type 2 226 -1229 394 297 42 80 chr12 35713395 35713658 -108568831 + L1MC4a LINE L1 5650 5902 -153 2061 154 9 0 chr12 35713757 35714094 -108568395 - L1PA15 LINE L1 -7 6158 5819 9641 176 36 18 chr12 35714942 35716092 -108566397 - L1PA13 LINE L1 -7 7594 6467 4797 70 12 2 chr12 35716092 35716735 -108565754 - L1PA6 LINE L1 0 6154 5505 9641 176 36 18 chr12 35716735 35718490 -108563999 - L1PA13 LINE L1 -1134 6467 4649 * 35368 109 26 14 chr12 35718486 35724585 -108557904 - L1PA8 LINE L1 0 6172 11 7201 212 18 14 chr12 35724601 35726902 -108555587 - L1PA13 LINE L1 -2922 4662 2360 675 159 0 0 chr12 35726902 35727009 -108555480 - U6 snRNA snRNA 0 107 1 259 360 51 34 chr12 35727442 35727620 -108554869 - L3 LINE CR1 -85 1492 1312 431 242 36 24 chr12 35728069 35728234 -108554255 + L1ME4a LINE L1 5583 5749 -372 1592 125 14 108 chr12 35728270 35728621 -108553868 + L1MA10 LINE L1 5922 6239 -95 260 87 406 0 chr12 35728873 35728942 -108553547 + L1MA10 LINE L1 6235 6331 -3 320 259 126 21 chr12 35728954 35729097 -108553392 + L1ME4a LINE L1 5798 5955 -166 203 279 0 16 chr12 35729119 35729180 -108553309 + GA-rich Low_complexity Low_complexity 4 63 0 1487 136 129 22 chr12 35729551 35729823 -108552666 - AluSx SINE Alu -11 301 1 703 285 0 0 chr12 35729897 35730048 -108552441 - MER5A DNA MER1_type -14 175 25 15709 95 14 1 chr12 35731804 35733984 -108548505 + L1P LINE L1 1 2209 -3937 * 22180 68 5 8 chr12 35733981 35736926 -108545563 + L1P LINE L1 39 2974 -3172 2996 246 77 19 chr12 35737052 35738311 -108544178 + L1M4c LINE L1 2302 3629 -2753 41710 43 22 2 chr12 35738335 35744356 -108538133 - L1PA3 LINE L1 -4 6151 5 2916 214 36 58 chr12 35744358 35744480 -108538009 + L1M4c LINE L1 3632 3755 -2627 2058 147 22 30 chr12 35744480 35744847 -108537642 + THE1B LTR MaLR 1 364 0 11157 113 8 0 chr12 35744847 35746415 -108536074 + THE1B-int LTR MaLR 1 1580 0 2060 144 22 35 chr12 35746415 35746784 -108535705 + THE1B LTR MaLR 1 364 0 2916 214 36 58 chr12 35746784 35747107 -108535382 + L1M4c LINE L1 3753 4082 -2300 4820 101 22 5 chr12 35747107 35747849 -108534640 + L1MA1 LINE L1 5549 6302 0 2916 214 36 58 chr12 35747849 35748351 -108534138 + L1M4c LINE L1 4082 4561 -1821 5356 109 22 0 chr12 35748403 35748764 -108533725 - L1PA13 LINE L1 -8 6155 5804 2377 127 5 24 chr12 35748764 35749134 -108533355 + THE1B LTR MaLR 2 364 0 5356 109 22 0 chr12 35749134 35750050 -108532439 - L1PA13 LINE L1 -359 5804 4855 2415 201 19 11 chr12 35750051 35750584 -108531905 + L1MA9 LINE L1 5407 5943 -369 318 26 0 0 chr12 35751757 35751796 -108530693 + (GA)n Simple_repeat Simple_repeat 1 39 0 * 360 0 0 0 chr12 35751795 35751835 -108530654 + (TG)n Simple_repeat Simple_repeat 2 41 0 181 319 14 29 chr12 35752414 35752483 -108530006 - MER5B DNA MER1_type -74 104 37 257 173 40 40 chr12 35752522 35752597 -108529892 - MER116 DNA Mariner 0 80 6 219 338 14 14 chr12 35752638 35752712 -108529777 - MER5A DNA MER1_type -63 126 53 4817 69 12 0 chr12 35753503 35754142 -108528347 - L1PA6 LINE L1 -3 6151 5505 8197 193 23 13 chr12 35754171 35755896 -108526593 - L1PA12 LINE L1 -1193 6391 4649 * 35383 109 26 14 chr12 35755892 35761991 -108520498 - L1PA8 LINE L1 0 6172 11 7281 212 18 14 chr12 35762007 35764307 -108518182 - L1PA12 LINE L1 -2922 4662 2360 675 159 0 0 chr12 35764307 35764414 -108518075 - U6 snRNA snRNA 0 107 1 259 360 51 34 chr12 35764847 35765025 -108517464 - L3 LINE CR1 -85 1492 1312 431 242 36 24 chr12 35765474 35765639 -108516850 + L1ME4a LINE L1 5583 5749 -372 1592 125 14 108 chr12 35765675 35766026 -108516463 + L1MA10 LINE L1 5922 6239 -95 260 87 406 0 chr12 35766278 35766347 -108516142 + L1MA10 LINE L1 6235 6331 -3 320 259 126 21 chr12 35766359 35766502 -108515987 + L1ME4a LINE L1 5798 5955 -166 203 279 0 16 chr12 35766524 35766585 -108515904 + GA-rich Low_complexity Low_complexity 4 63 0 1487 136 129 22 chr12 35766956 35767228 -108515261 - AluSx SINE Alu -11 301 1 703 285 0 0 chr12 35767302 35767453 -108515036 - MER5A DNA MER1_type -14 175 25 15639 99 12 1 chr12 35769209 35771392 -108511097 + L1P LINE L1 1 2209 -3937 * 41395 59 5 4 chr12 35771389 35777503 -108504986 + L1PA5 LINE L1 39 6154 0 349 294 142 41 chr12 35777862 35778080 -108504409 + MIR SINE MIR 23 262 0 1305 205 42 72 chr12 35779716 35780102 -108502387 + MLT1A2 LTR MaLR 1 374 0 1469 174 69 98 chr12 35780329 35780737 -108501752 + MSTD LTR MaLR 1 396 0 1426 241 71 49 chr12 35782950 35783444 -108499045 + MLT1D LTR MaLR 1 505 0 857 298 149 8 chr12 35784878 35785247 -108497242 + MLT1J LTR MaLR 77 497 -14 493 214 55 167 chr12 35786447 35786821 -108495668 + LTR28 LTR ERV1 1 1147 -101 23 0 0 0 chr12 35786996 35787019 -108495470 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 35787179 35787200 -108495289 + AT_rich Low_complexity Low_complexity 1 21 0 263 301 154 0 chr12 35789017 35789140 -108493349 + MIR SINE MIR 121 262 0 212 373 89 27 chr12 35789494 35789719 -108492770 + L3 LINE CR1 211 449 -1128 2357 91 54 23 chr12 35789722 35790075 -108492414 + THE1B LTR MaLR 1 364 0 2037 70 4 4 chr12 35790075 35790347 -108492142 + THE1B-int LTR MaLR 1 272 -1308 2228 249 79 28 chr12 35790349 35792091 -108490398 - L1M2 LINE L1 -4221 2886 1028 1396 207 0 29 chr12 35792091 35792371 -108490118 - L1M2 LINE L1 -6758 272 1 282 370 104 45 chr12 35792388 35792467 -108490022 + L3 LINE CR1 910 983 -594 2176 169 51 5 chr12 35792467 35792876 -108489613 + MSTA LTR MaLR 1 428 0 282 370 104 45 chr12 35792876 35793239 -108489250 + L3 LINE CR1 983 1378 -199 502 283 36 7 chr12 35793359 35793497 -108488992 + MIR SINE MIR 1 142 -120 817 279 30 7 chr12 35793501 35793802 -108488687 + MER46C DNA MER2_type 12 319 -19 2122 144 33 30 chr12 35793895 35794257 -108488232 - THE1B LTR MaLR 0 364 2 1147 62 0 0 chr12 35794744 35794888 -108487601 - AluY SINE Alu 0 311 168 2046 185 60 25 chr12 35795053 35795490 -108486999 - MSTB2 LTR MaLR -5 452 1 397 306 197 12 chr12 35796517 35796837 -108485652 - L2 LINE L2 -998 2316 1938 21 71 0 0 chr12 35797294 35797336 -108485153 + AT_rich Low_complexity Low_complexity 1 42 0 2498 201 34 17 chr12 35797420 35797947 -108484542 + MER89 LTR ERV1 1 536 -23 3367 120 12 2 chr12 35798148 35798657 -108483832 + MER75 DNA T2_type 1 514 0 633 286 39 0 chr12 35800270 35800452 -108482037 - MIR SINE MIR -2 260 72 356 160 0 0 chr12 35800648 35800698 -108481791 + MER75 DNA T2_type 22 71 -443 485 105 11 0 chr12 35800713 35800808 -108481681 + (CA)n Simple_repeat Simple_repeat 1 96 0 2330 47 47 3 chr12 35801055 35801353 -108481136 - AluY SINE Alu 0 311 1 909 240 90 49 chr12 35802566 35802933 -108479556 - LTR50 LTR ERVL 0 795 414 948 278 87 10 chr12 35802976 35803275 -108479214 - LTR50 LTR ERVL -472 323 2 2074 221 22 35 chr12 35803374 35803909 -108478580 - L1P LINE L1 -1919 4227 3700 1747 61 13 0 chr12 35803985 35804214 -108478275 - MER75 DNA T2_type -2 512 281 1296 195 57 39 chr12 35804230 35804564 -108477925 - L1P LINE L1 -2486 3660 3321 246 266 25 13 chr12 35805010 35805089 -108477400 + LTR33A LTR ERVL 444 523 0 831 315 36 18 chr12 35806046 35806376 -108476113 + LTR16B LTR ERVL 125 460 -4 1824 329 65 37 chr12 35806416 35807160 -108475329 + HERV16 LTR ERVL 61 840 -4156 5712 76 53 2 chr12 35807160 35807946 -108474543 + LTR12 LTR ERV1 1 826 0 1824 329 65 37 chr12 35807946 35808171 -108474318 + HERV16 LTR ERVL 840 1057 -3939 5391 146 37 41 chr12 35808996 35810486 -108472003 + L1M1 LINE L1 4124 5618 -685 824 0 0 0 chr12 35810555 35810649 -108471840 - L1PA3 LINE L1 -250 5905 5812 1955 13 0 0 chr12 35810649 35810898 -108471591 + L1PA3 LINE L1 5914 6162 0 1125 249 24 45 chr12 35811288 35811670 -108470819 + MLT1A2 LTR MaLR 1 374 0 592 262 6 6 chr12 35812165 35812348 -108470141 + L1MC/D LINE L1 5189 5371 -775 * 6651 85 10 0 chr12 35812344 35813265 -108469224 - L1PA7 LINE L1 -1116 5030 4101 6530 73 14 6 chr12 35813267 35814361 -108468128 + L1PA7 LINE L1 5041 6141 -13 572 51 0 0 chr12 35814365 35814443 -108468046 + L1MC/D LINE L1 5354 5431 -902 947 274 66 51 chr12 35814655 35815125 -108467364 - LTR33 LTR ERVL -3 518 42 2285 77 0 3 chr12 35815250 35815558 -108466931 + AluY SINE Alu 1 307 0 530 183 0 8 chr12 35815780 35815911 -108466578 + GA-rich Low_complexity Low_complexity 1 130 0 221 219 0 0 chr12 35816192 35816233 -108466256 + (CCCA)n Simple_repeat Simple_repeat 2 42 0 11598 36 3 0 chr12 35816330 35817761 -108464728 - L1P LINE L1 -2096 4050 2615 3817 37 2 0 chr12 35817761 35818216 -108464273 + L1PA3 LINE L1 5696 6152 -3 27 0 0 0 chr12 35818892 35818919 -108463570 + AT_rich Low_complexity Low_complexity 1 27 0 305 379 29 14 chr12 35819664 35819804 -108462685 - MIR3 SINE MIR -51 157 16 348 24 0 0 chr12 35820250 35820291 -108462198 + (CA)n Simple_repeat Simple_repeat 2 42 0 1038 238 113 32 chr12 35820291 35820670 -108461819 - HERVL68 LTR ERVL -337 2700 2291 230 326 11 22 chr12 35821235 35821324 -108461165 - MIR SINE MIR -105 157 70 224 59 29 0 chr12 35821518 35821552 -108460937 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 318 327 39 70 chr12 35822246 35822503 -108459986 - MIR SINE MIR -2 260 12 594 239 133 28 chr12 35822643 35822861 -108459628 + L1ME1 LINE L1 36 276 -6120 1371 257 70 4 chr12 35822897 35823399 -108459090 + L1ME1 LINE L1 4708 5242 -973 691 86 0 0 chr12 35823406 35823499 -108458990 - HY3 scRNA scRNA -3 98 6 2481 225 76 38 chr12 35823531 35824467 -108458022 + L1ME1 LINE L1 5284 6231 -4 1639 188 70 25 chr12 35826129 35826345 -108456144 - MLT1B LTR MaLR 0 390 150 1520 189 17 28 chr12 35826345 35826509 -108455980 - AluJb SINE Alu -24 288 127 186 43 0 0 chr12 35826509 35826532 -108455957 + (TG)n Simple_repeat Simple_repeat 2 24 0 1520 189 17 28 chr12 35826532 35826658 -108455831 - AluJb SINE Alu -185 127 1 1639 188 70 25 chr12 35826658 35826796 -108455693 - MLT1B LTR MaLR -240 150 20 437 36 18 0 chr12 35826796 35826852 -108455637 + THE1C LTR MaLR 1 57 -318 * 1283 141 5 19 chr12 35826841 35827054 -108455435 + THE1C LTR MaLR 162 371 -4 324 70 0 0 chr12 35827128 35827171 -108455318 + (CA)n Simple_repeat Simple_repeat 1 43 0 25 0 0 0 chr12 35827467 35827492 -108454997 + AT_rich Low_complexity Low_complexity 1 25 0 736 307 167 25 chr12 35827493 35827972 -108454517 + L2 LINE L2 2347 2893 -421 489 324 155 7 chr12 35828053 35828331 -108454158 + L2 LINE L2 2995 3313 0 278 287 99 10 chr12 35830573 35830674 -108451815 - MIR SINE MIR -133 129 20 26 0 0 0 chr12 35831986 35832012 -108450477 + AT_rich Low_complexity Low_complexity 1 26 0 32 67 0 0 chr12 35832790 35832850 -108449639 + AT_rich Low_complexity Low_complexity 1 60 0 1333 202 0 4 chr12 35833255 35833488 -108449001 - AluJb SINE Alu -27 285 54 565 248 0 0 chr12 35833491 35833600 -108448889 - AluJo/FLAM SINE Alu -201 111 3 446 242 189 8 chr12 35833603 35833735 -108448754 - MER5A DNA MER1_type -6 183 28 733 224 16 42 chr12 35833748 35833940 -108448549 - MER5A DNA MER1_type 0 189 3 378 369 66 21 chr12 35834885 35835264 -108447225 + L2 LINE L2 2249 2644 -670 226 97 0 97 chr12 35836790 35836966 -108445523 + (TA)n Simple_repeat Simple_repeat 2 160 0 269 161 34 101 chr12 35836968 35837117 -108445372 + (TATAG)n Simple_repeat Simple_repeat 3 141 0 249 14 68 54 chr12 35837117 35837191 -108445298 + (TA)n Simple_repeat Simple_repeat 2 76 0 214 375 83 73 chr12 35837587 35837984 -108444505 + L2 LINE L2 2826 3226 -46 350 351 26 13 chr12 35838070 35838224 -108444265 - MIR3 SINE MIR -21 187 32 183 100 0 0 chr12 35838235 35838265 -108444224 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1472 218 7 18 chr12 35838267 35838552 -108443937 - AluJo SINE Alu -30 282 1 354 395 36 0 chr12 35840101 35840268 -108442221 + MIR3 SINE MIR 8 180 -28 430 239 0 0 chr12 35840367 35840459 -108442030 - L2 LINE L2 0 3313 3222 1021 363 20 25 chr12 35840927 35841517 -108440972 + L1PA13 LINE L1 788 1374 -6200 325 257 21 71 chr12 35841629 35841769 -108440720 + L1PA13 LINE L1 2054 2186 -5395 808 324 6 9 chr12 35842013 35842331 -108440158 + L1PA13 LINE L1 2191 2507 -5074 2122 139 5 52 chr12 35842335 35842717 -108439772 - THE1B LTR MaLR 0 364 1 11088 101 10 38 chr12 35842719 35844342 -108438147 - THE1B-int LTR MaLR -2 1578 1 2082 158 5 30 chr12 35844342 35844715 -108437774 - THE1B LTR MaLR 0 364 1 6816 238 65 49 chr12 35844723 35847707 -108434782 + L1PA13 LINE L1 2529 5538 -2046 357 264 163 0 chr12 35847902 35848031 -108434458 + MIR SINE MIR 68 217 -45 279 294 35 56 chr12 35848401 35848544 -108433945 + MIR SINE MIR 49 188 -74 1519 218 112 3 chr12 35849461 35849820 -108432669 - MLT1D LTR MaLR -123 382 1 273 376 91 11 chr12 35849831 35850017 -108432472 + MIR SINE MIR 30 230 -32 33 0 0 0 chr12 35850105 35850138 -108432351 + AT_rich Low_complexity Low_complexity 1 33 0 369 0 0 0 chr12 35850301 35850342 -108432147 + (TG)n Simple_repeat Simple_repeat 2 42 0 1536 176 44 4 chr12 35850349 35850621 -108431868 - AluSx SINE Alu -29 283 1 36 23 0 0 chr12 35850869 35850912 -108431577 + AT_rich Low_complexity Low_complexity 1 43 0 1432 119 5 0 chr12 35850912 35851114 -108431375 + AluSg/x SINE Alu 82 284 -25 213 39 0 0 chr12 35851114 35851140 -108431349 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 269 265 84 0 chr12 35851148 35851231 -108431258 - MER3 DNA MER1_type -108 101 12 212 287 253 0 chr12 35851313 35851400 -108431089 + L2 LINE L2 3204 3312 -1 23 0 0 0 chr12 35853013 35853036 -108429453 + AT_rich Low_complexity Low_complexity 1 23 0 277 339 54 45 chr12 35854523 35854744 -108427745 - MLT1I LTR MaLR -55 354 132 53 17 0 0 chr12 35854785 35854845 -108427644 + AT_rich Low_complexity Low_complexity 1 60 0 338 129 18 13 chr12 35855229 35855303 -108427186 + L1ME1 LINE L1 6102 6184 0 186 191 0 0 chr12 35855479 35855521 -108426968 + A-rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr12 35855996 35856023 -108426466 + AT_rich Low_complexity Low_complexity 1 27 0 980 231 92 3 chr12 35856134 35856416 -108426073 - MER5C DNA MER1_type -6 318 12 495 114 0 0 chr12 35856622 35856701 -108425788 - L1PA14 LINE L1 -5 6156 6078 973 286 43 6 chr12 35856712 35857062 -108425427 + L1ME LINE L1 5310 5672 -498 324 0 0 0 chr12 35857074 35857110 -108425379 + (CA)n Simple_repeat Simple_repeat 2 37 0 859 289 28 73 chr12 35857110 35857618 -108424871 - L1MCc LINE L1 -5288 1135 651 514 231 97 30 chr12 35859240 35859374 -108423115 - MER5A DNA MER1_type -46 143 1 1863 129 42 58 chr12 35859438 35859819 -108422670 - THE1C LTR MaLR 0 375 1 270 309 31 0 chr12 35859819 35859916 -108422573 + MER81 DNA DNA 9 108 -6 2203 168 57 14 chr12 35859916 35860339 -108422150 + MER65A LTR ERV1 1 441 -4 24 67 0 0 chr12 35860423 35860468 -108422021 + AT_rich Low_complexity Low_complexity 1 45 0 322 255 41 10 chr12 35860794 35860892 -108421597 - MLT1I LTR MaLR -3 406 306 191 302 23 35 chr12 35861367 35861453 -108421036 - MER5A DNA MER1_type -80 109 25 * 206 189 170 19 chr12 35861423 35861476 -108421013 - MER5B DNA MER1_type -73 105 45 215 396 60 7 chr12 35861633 35861782 -108420707 + MIR3 SINE MIR 49 205 -3 270 0 0 0 chr12 35863184 35863214 -108419275 + (T)n Simple_repeat Simple_repeat 1 30 0 370 306 134 34 chr12 35864294 35864503 -108417986 + MIR SINE MIR 1 230 -32 295 330 170 9 chr12 35865332 35865444 -108417045 - L2 LINE L2 -9 3263 3134 863 276 22 13 chr12 35865466 35865698 -108416791 + MIR SINE MIR 19 252 -10 254 324 137 7 chr12 35866009 35866148 -108416341 - L2 LINE L2 -459 2855 2699 22 0 0 0 chr12 35867974 35867996 -108414493 + AT_rich Low_complexity Low_complexity 1 22 0 588 63 13 0 chr12 35868212 35868291 -108414198 - MADE1 DNA Mariner 0 80 1 992 208 75 106 chr12 35868587 35869061 -108413428 - MLT1C LTR MaLR 0 467 1 3369 166 23 12 chr12 35869138 35869788 -108412701 - L1MA7 LINE L1 -16 6275 5619 240 254 111 0 chr12 35869918 35869981 -108412508 - MIR3 SINE MIR -15 193 124 2438 86 0 3 chr12 35870670 35870983 -108411506 - AluSq SINE Alu -1 312 1 1428 109 19 9 chr12 35872713 35872924 -108409565 - MER30 DNA MER1_type -17 213 1 209 232 14 0 chr12 35873572 35873641 -108408848 + (TA)n Simple_repeat Simple_repeat 2 71 0 620 161 29 51 chr12 35873644 35873781 -108408708 - FLAM_C SINE Alu -4 139 6 563 315 91 26 chr12 35873917 35874149 -108408340 - MIR SINE MIR -8 254 8 24 0 0 0 chr12 35874167 35874191 -108408298 + AT_rich Low_complexity Low_complexity 1 24 0 390 360 167 22 chr12 35874191 35874699 -108407790 + L3 LINE CR1 993 1574 -3 619 258 163 5 chr12 35875368 35875558 -108406931 - MIR SINE MIR -32 230 11 356 316 83 18 chr12 35876663 35876831 -108405658 - L1ME LINE L1 -5618 452 274 286 275 84 23 chr12 35876845 35876976 -108405513 - L1ME LINE L1 -5843 227 89 2597 99 11 8 chr12 35877199 35877562 -108404927 - THE1B LTR MaLR 0 364 1 493 297 40 7 chr12 35877964 35878169 -108404320 - MIR SINE MIR -8 254 2 305 248 60 38 chr12 35878190 35878323 -108404166 - L2 LINE L2 -2763 551 416 351 44 0 0 chr12 35878697 35878742 -108403747 + (TG)n Simple_repeat Simple_repeat 2 46 0 2386 65 14 0 chr12 35879731 35880023 -108402466 + AluSp SINE Alu 1 296 -17 2371 54 3 3 chr12 35880031 35880326 -108402163 + AluY SINE Alu 1 295 -16 327 250 12 25 chr12 35881435 35881515 -108400974 + MIR SINE MIR 23 101 -107 298 345 143 0 chr12 35882788 35882907 -108399582 + L2 LINE L2 3137 3272 0 23 0 0 0 chr12 35882945 35882968 -108399521 + AT_rich Low_complexity Low_complexity 1 23 0 531 68 0 0 chr12 35883180 35883253 -108399236 - Alu SINE Alu -15 294 222 200 248 16 25 chr12 35883318 35883439 -108399050 + (TTA)n Simple_repeat Simple_repeat 3 122 0 33 66 0 0 chr12 35883452 35883513 -108398976 + AT_rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr12 35883728 35883749 -108398740 + AT_rich Low_complexity Low_complexity 1 21 0 355 235 59 24 chr12 35884624 35884709 -108397780 - MLT1H LTR MaLR -51 498 411 22 35 0 0 chr12 35885086 35885115 -108397374 + AT_rich Low_complexity Low_complexity 1 29 0 734 234 26 75 chr12 35886279 35886506 -108395983 - MIR SINE MIR -16 246 31 467 271 107 37 chr12 35887843 35887951 -108394538 - L2 LINE L2 -48 3265 3166 2009 143 39 3 chr12 35887951 35888287 -108394202 - MER7A DNA MER2_type 0 346 1 467 271 107 37 chr12 35888287 35888422 -108394067 - L2 LINE L2 -147 3166 3005 1606 271 45 11 chr12 35888447 35888975 -108393514 + L1PB1 LINE L1 6 551 -6312 3338 100 35 81 chr12 35888975 35889595 -108392894 + LTR14B LTR ERVK 17 608 0 6153 146 153 5 chr12 35889627 35891456 -108391033 + L1PB1 LINE L1 605 2832 -4031 2149 178 12 34 chr12 35891452 35894391 -108388098 + L1PB1 LINE L1 3842 6859 -8 * 294 313 67 56 chr12 35894483 35894678 -108387811 - MIR SINE MIR -58 204 8 674 292 75 4 chr12 35895693 35895933 -108386556 - L2 LINE L2 -486 2828 2572 283 304 11 0 chr12 35895971 35896063 -108386426 + L2 LINE L2 3180 3272 0 234 312 22 22 chr12 35896524 35896662 -108385827 + L1MC4a LINE L1 5884 6021 -1787 453 299 63 35 chr12 35897488 35897662 -108384827 - MIR3 SINE MIR -11 197 19 22 70 0 0 chr12 35897803 35897846 -108384643 + AT_rich Low_complexity Low_complexity 1 43 0 10305 207 56 22 chr12 35899328 35899358 -108383131 + L1MC3 LINE L1 4978 5006 -2779 1307 161 35 121 chr12 35899358 35899755 -108382734 + MLT1A1 LTR MaLR 1 363 -2 10305 207 56 22 chr12 35899755 35902097 -108380392 + L1MC3 LINE L1 5006 7455 -330 1658 221 28 6 chr12 35902097 35902454 -108380035 - MLT1A1 LTR MaLR 0 365 1 10305 207 56 22 chr12 35902454 35902797 -108379692 + L1MC3 LINE L1 7455 7785 0 345 269 23 47 chr12 35902840 35903045 -108379444 + HAL1 LINE L1 1962 2232 -275 391 315 54 0 chr12 35903297 35903427 -108379062 + MIR3 SINE MIR 61 197 -11 215 245 245 20 chr12 35904481 35904583 -108377906 + MIR SINE MIR 8 132 -130 231 312 71 105 chr12 35904780 35905046 -108377443 - L2 LINE L2 -788 2526 2270 306 346 73 11 chr12 35905174 35905353 -108377136 + L2 LINE L2 2293 2482 -832 552 279 0 0 chr12 35905507 35905672 -108376817 + L1ME3A LINE L1 5123 5287 -859 549 263 22 22 chr12 35905676 35905904 -108376585 + L1ME3A LINE L1 5352 5579 -591 14450 70 1 3 chr12 35905909 35907755 -108374734 + L1PA4 LINE L1 2 1842 -4304 35303 37 18 1 chr12 35907756 35913780 -108368709 - L1PA3 LINE L1 0 6155 2 29353 41 4 0 chr12 35913780 35918089 -108364400 + L1PA4 LINE L1 1832 6152 -3 1347 268 102 15 chr12 35918099 35918637 -108363852 + L1ME3A LINE L1 5571 6155 -15 24 0 0 0 chr12 35918856 35918880 -108363609 + AT_rich Low_complexity Low_complexity 1 24 0 5404 54 0 2 chr12 35919521 35920151 -108362338 + L1PA5 LINE L1 5525 6153 -1 215 30 0 30 chr12 35920303 35920336 -108362153 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2289 107 0 0 chr12 35920792 35921092 -108361397 + AluSg SINE Alu 4 303 -7 186 321 36 0 chr12 35921246 35921302 -108361187 - MIR SINE MIR -160 102 45 246 32 0 0 chr12 35921457 35921488 -108361001 + (CA)n Simple_repeat Simple_repeat 2 32 0 190 305 0 84 chr12 35921589 35921684 -108360805 + MIR SINE MIR 65 151 -111 23 0 0 0 chr12 35921773 35921796 -108360693 + AT_rich Low_complexity Low_complexity 1 23 0 800 167 27 27 chr12 35923136 35923286 -108359203 + L1PB4 LINE L1 6005 6154 -2 22 0 0 0 chr12 35923403 35923425 -108359064 + AT_rich Low_complexity Low_complexity 1 22 0 1396 183 10 55 chr12 35923802 35924091 -108358398 - AluJo SINE Alu -36 276 1 43354 51 10 0 chr12 35924174 35930267 -108352222 + L1PA4 LINE L1 1 6150 -5 267 275 58 50 chr12 35930267 35930387 -108352102 + MLT1L LTR MaLR 129 249 -366 512 262 75 122 chr12 35930528 35931021 -108351468 - L2 LINE L2 0 3313 2844 506 289 44 6 chr12 35931156 35931315 -108351174 + MLT1L LTR MaLR 447 611 -4 201 265 118 0 chr12 35932293 35932361 -108350128 + MIR SINE MIR 55 130 -78 1305 218 37 17 chr12 35932399 35932755 -108349734 + L1MB7 LINE L1 5570 5932 -252 553 211 56 72 chr12 35932751 35932931 -108349558 + L1MA5A LINE L1 5762 5938 -359 * 1506 211 59 9 chr12 35932797 35933138 -108349351 + L1PA16 LINE L1 5795 6152 -14 1322 77 33 83 chr12 35933137 35933378 -108349111 - L1MA1 LINE L1 -265 5899 5776 * 1001 52 0 0 chr12 35934481 35934597 -108347892 + L1PA2 LINE L1 6038 6153 -2 2318 190 28 31 chr12 35934712 35935170 -108347319 - MLT2C2 LTR ERVL 0 464 8 402 331 68 25 chr12 35935248 35935411 -108347078 - MIR SINE MIR -72 190 21 1942 150 3 0 chr12 35935679 35935972 -108346517 + AluSq SINE Alu 1 294 -19 1768 100 62 8 chr12 35937026 35937285 -108345204 + L1P5 LINE L1 5519 5791 -360 303 203 0 0 chr12 35937295 35937359 -108345130 + (TA)n Simple_repeat Simple_repeat 1 64 0 847 145 0 0 chr12 35937359 35937483 -108345006 - AluSq SINE Alu -109 204 81 361 248 241 0 chr12 35937636 35937773 -108344716 - L1ME3A LINE L1 -58 6112 5943 1152 246 71 51 chr12 35940005 35940456 -108342033 - MLT1C LTR MaLR -2 465 6 18705 45 12 0 chr12 35940756 35942956 -108339533 + HERV17 LTR ERV1 3794 6019 -2607 322 26 0 0 chr12 35942949 35942988 -108339501 + HERV17 LTR ERV1 7510 7548 -1078 * 2444 58 0 0 chr12 35942978 35943270 -108339219 + HERV17 LTR ERV1 8335 8626 0 2377 56 43 31 chr12 35943270 35943592 -108338897 + LTR17 LTR ERV1 1 326 -454 246 32 0 0 chr12 35943593 35943624 -108338865 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 237 87 48 63 chr12 35944777 35944903 -108337586 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 290 167 61 18 chr12 35944921 35945035 -108337454 + (TA)n Simple_repeat Simple_repeat 2 120 0 243 0 0 0 chr12 35948179 35948206 -108334283 + (A)n Simple_repeat Simple_repeat 1 27 0 441 306 105 36 chr12 35948389 35948763 -108333726 + L1M2 LINE L1 674 1147 -5702 8078 38 0 11 chr12 35950847 35951754 -108330735 + MER11D LTR ERVK 1 897 0 1586 69 0 25 chr12 35952116 35952355 -108330134 + AluY SINE Alu 83 316 0 1264 243 94 55 chr12 35953352 35953579 -108328910 - L1M4 LINE L1 -2130 4016 3799 952 213 0 0 chr12 35953579 35953734 -108328755 - FRAM SINE Alu -11 155 1 1264 243 94 55 chr12 35953734 35954104 -108328385 - L1M4 LINE L1 -2347 3799 3396 13225 58 4 1 chr12 35955517 35957196 -108325293 + L1P LINE L1 1262 2945 -3201 2964 33 12 0 chr12 35957196 35957650 -108324839 - L1P2 LINE L1 -540 5615 5156 618 266 0 0 chr12 35958436 35958564 -108323925 + FLAM_A SINE Alu 10 137 -5 721 168 110 7 chr12 35958731 35958886 -108323603 - MER6 DNA MER2_type 0 865 695 10118 45 3 2 chr12 35958987 35960232 -108322257 + L1P LINE L1 3946 5192 -954 2147 230 34 8 chr12 38960232 38960766 -105321723 - HERVL74 LTR ERVL -2426 3259 2712 2162 233 34 19 chr12 38960799 38961326 -105321163 - HERVL74 LTR ERVL -3043 2642 2108 1720 179 3 10 chr12 38961327 38961623 -105320866 + AluJo SINE Alu 1 294 -18 1328 206 79 0 chr12 38961810 38962077 -105320412 - HERVL74 LTR ERVL -3583 2102 1815 1848 214 106 14 chr12 38962077 38962511 -105319978 - MLT2B1 LTR ERVL -46 474 1 247 105 0 0 chr12 38962511 38962548 -105319941 - U5 snRNA snRNA -76 40 4 5844 160 18 65 chr12 38962548 38965057 -105317432 + L1PB1 LINE L1 3817 6151 0 2218 225 71 56 chr12 38965107 38965356 -105317133 - HERVL74 LTR ERVL -3898 1787 1543 1542 207 20 20 chr12 38965356 38965661 -105316828 + AluJo SINE Alu 1 305 -7 2218 225 71 56 chr12 38965661 38966105 -105316384 - HERVL74 LTR ERVL -4142 1543 1084 1026 103 0 22 chr12 38966147 38966331 -105316158 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 845 155 0 6 chr12 38966336 38966504 -105315985 + CT-rich Low_complexity Low_complexity 1 167 0 1034 139 0 6 chr12 38966509 38966689 -105315800 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 586 215 108 6 chr12 38966709 38966867 -105315622 - HERVL74 LTR ERVL -2590 966 793 265 261 92 0 chr12 38966948 38967013 -105315476 + tRNA-Met-i tRNA tRNA 3 73 -2 1365 143 74 0 chr12 38967070 38967287 -105315202 + HUERS-P1 LTR ERV1 6348 6580 -957 * 1899 64 8 4 chr12 38967286 38967551 -105314938 + HUERS-P1 LTR ERV1 4557 4822 -1441 402 205 13 0 chr12 38967551 38967629 -105314860 + MSTB LTR MaLR 29 107 -319 1390 172 115 23 chr12 38967631 38967969 -105314520 + MSTA LTR MaLR 47 357 -71 4773 101 12 12 chr12 38967995 38968686 -105313803 - L1PA10 LINE L1 -2 6166 5476 * 19539 41 3 0 chr12 38968681 38971870 -105310619 - L1PA4 LINE L1 -1 6154 2951 2221 108 0 0 chr12 38971871 38972166 -105310323 - AluSx SINE Alu -17 295 1 185 224 52 149 chr12 38972534 38972668 -105309821 - L2 LINE L2 0 3272 3152 192 77 0 0 chr12 38972714 38972740 -105309749 + (T)n Simple_repeat Simple_repeat 1 26 0 469 189 0 10 chr12 38972740 38972879 -105309610 - LTR40a LTR ERVL -103 416 237 351 0 0 0 chr12 38972879 38972918 -105309571 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4621 32 152 2 chr12 38972934 38973501 -105308988 - SVA Other Other -10 1376 725 180 0 0 0 chr12 38973938 38973958 -105308531 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1090 193 68 49 chr12 38974184 38974449 -105308040 + AluJo SINE Alu 9 278 -34 851 126 20 7 chr12 38974546 38974697 -105307792 - MER53 DNA DNA -1 188 36 23 0 0 0 chr12 38975525 38975548 -105306941 + AT_rich Low_complexity Low_complexity 1 23 0 716 191 0 0 chr12 38975802 38975928 -105306561 - FLAM_C SINE Alu -17 126 1 618 233 124 48 chr12 38976096 38976452 -105306037 + L1ME LINE L1 606 988 -5082 448 289 54 20 chr12 38976518 38976667 -105305822 + L3 LINE CR1 377 530 -1047 367 313 39 34 chr12 38977034 38977213 -105305276 + MER5A DNA MER1_type 1 180 -9 359 160 330 0 chr12 38977331 38977431 -105305058 - MER20 DNA MER1_type -81 138 6 2186 117 0 0 chr12 38979987 38980285 -105302204 + AluSx SINE Alu 1 298 -14 1039 149 12 0 chr12 38980614 38980775 -105301714 - FRAM SINE Alu -18 158 1 21 36 0 0 chr12 38982037 38982065 -105300424 + AT_rich Low_complexity Low_complexity 1 28 0 277 191 0 0 chr12 38983006 38983053 -105299436 + tRNA-Arg-CGC tRNA tRNA 2 48 -28 24 0 0 0 chr12 38983098 38983122 -105299367 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr12 38983170 38983194 -105299295 + AT_rich Low_complexity Low_complexity 1 24 0 854 236 57 94 chr12 38983281 38983683 -105298806 + L1MC4a LINE L1 5597 5983 -1825 234 253 33 22 chr12 38984391 38984482 -105298007 - L1ME4a LINE L1 -51 6070 5979 227 273 0 0 chr12 38985346 38985401 -105297088 - MER112 DNA MER1_type -25 235 181 562 199 58 19 chr12 38985450 38985606 -105296883 - MER112 DNA MER1_type -98 162 1 21 0 0 0 chr12 38986078 38986099 -105296390 + AT_rich Low_complexity Low_complexity 1 21 0 280 160 0 202 chr12 38986702 38986761 -105295728 - MER33 DNA MER1_type -2505 80 45 1643 173 21 14 chr12 38986761 38987045 -105295444 + AluJo SINE Alu 9 294 -18 280 160 0 202 chr12 38987045 38987079 -105295410 - MER33 DNA MER1_type -2540 45 6 24 53 0 0 chr12 38988319 38988357 -105294132 + AT_rich Low_complexity Low_complexity 1 38 0 915 202 149 0 chr12 38989441 38989649 -105292840 - L1MD2 LINE L1 -46 6313 6075 1016 181 6 0 chr12 38989680 38989851 -105292638 + FRAM SINE Alu 1 171 -5 2218 98 3 10 chr12 38990001 38990297 -105292192 - AluSg SINE Alu -16 294 1 310 255 27 122 chr12 38990502 38990796 -105291693 + L1MC5 LINE L1 7620 7885 -76 22 0 0 0 chr12 38990905 38990927 -105291562 + AT_rich Low_complexity Low_complexity 1 22 0 1840 156 59 36 chr12 38990932 38991540 -105290949 + L1M3 LINE L1 4945 5556 -624 317 203 0 13 chr12 38991540 38991619 -105290870 + L1MB3 LINE L1 6093 6170 -13 21 71 0 0 chr12 38991810 38991852 -105290637 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chr12 38991883 38991916 -105290573 + AT_rich Low_complexity Low_complexity 1 33 0 1689 165 7 10 chr12 38992517 38992808 -105289681 + AluJo SINE Alu 18 307 -5 473 319 95 37 chr12 38993409 38993735 -105288754 + L1ME LINE L1 36 380 -6016 4005 247 137 43 chr12 38994078 38994338 -105288151 + L1ME LINE L1 2435 2669 -3546 2117 100 7 23 chr12 38994338 38994639 -105287850 + AluSq SINE Alu 3 298 -15 4005 247 137 43 chr12 38994639 38995051 -105287438 + L1ME LINE L1 2669 3041 -3174 1355 117 75 0 chr12 38995051 38995265 -105287224 - MER30 DNA MER1_type 0 230 1 4005 247 137 43 chr12 38995265 38997087 -105285402 + L1ME LINE L1 3041 5237 -978 1787 81 0 0 chr12 38997087 38997309 -105285180 + AluY SINE Alu 81 302 -9 4005 247 137 43 chr12 38997309 38997347 -105285142 + L1ME LINE L1 5237 5270 -945 570 189 9 0 chr12 38997346 38997457 -105285032 + L1ME LINE L1 5613 5724 -509 * 213 167 42 0 chr12 38998173 38998221 -105284268 + CT-rich Low_complexity Low_complexity 2 51 0 603 255 47 7 chr12 38998416 38998565 -105283924 + MIR SINE MIR 17 171 -91 2916 164 77 19 chr12 38998566 38999201 -105283288 + L1MB7 LINE L1 5497 6168 -16 224 282 28 14 chr12 38999231 38999302 -105283187 + MIR SINE MIR 191 262 0 294 333 40 32 chr12 38999818 38999944 -105282545 - MIR SINE MIR -130 132 6 315 281 102 8 chr12 39001822 39001950 -105280539 + MIR SINE MIR 119 258 -4 347 288 48 34 chr12 39002770 39002916 -105279573 - MER5A DNA MER1_type -6 183 36 317 293 40 47 chr12 39002786 39002936 -105279553 + MER5A DNA MER1_type 37 185 -4 * 4617 125 13 25 chr12 39003681 39004085 -105278404 + L1PA16 LINE L1 5393 5800 -366 2217 160 59 10 chr12 39004085 39004491 -105277998 - MSTA LTR MaLR -2 426 1 4617 125 13 25 chr12 39004491 39004749 -105277740 + L1PA16 LINE L1 5800 6047 -119 1931 147 133 13 chr12 39004749 39005131 -105277358 - MSTA LTR MaLR 0 428 1 4617 125 13 25 chr12 39005131 39005241 -105277248 + L1PA16 LINE L1 6047 6157 -9 37 69 0 0 chr12 39005241 39005313 -105277176 + AT_rich Low_complexity Low_complexity 1 72 0 180 0 0 0 chr12 39005942 39005962 -105276527 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 692 170 150 14 chr12 39006420 39006567 -105275922 + MER58A DNA MER1_type 34 200 -24 1847 82 4 4 chr12 39006900 39007193 -105275296 + AluY SINE Alu 39 331 0 454 326 8 8 chr12 39007712 39007841 -105274648 - MER5A DNA MER1_type -1 188 60 1275 194 39 46 chr12 39007845 39008257 -105274232 - LTR37A LTR ERV1 0 426 18 297 207 13 3 chr12 39008780 39008858 -105273631 - L1MA6 LINE L1 0 7716 7642 988 188 41 5 chr12 39008863 39009060 -105273429 - L1MA6 LINE L1 -293 7426 7223 785 161 121 0 chr12 39009067 39009216 -105273273 + MSTA LTR MaLR 1 167 -261 702 212 18 42 chr12 39009195 39009360 -105273129 + MSTA LTR MaLR 268 428 0 * 8809 188 35 9 chr12 39009360 39011581 -105270908 - L1MA6 LINE L1 -510 7209 4851 1459 200 48 14 chr12 39011581 39011871 -105270618 - AluJo SINE Alu -5 307 8 8809 188 35 9 chr12 39011871 39013418 -105269071 - L1MA6 LINE L1 -2868 4851 3345 940 216 74 50 chr12 39013674 39014019 -105268470 - MER67C LTR ERV1 -3 511 173 355 241 18 62 chr12 39014020 39014132 -105268357 - MLT1I LTR MaLR -240 169 63 231 79 158 0 chr12 39014248 39014286 -105268203 - L1M2 LINE L1 -549 5751 5708 307 329 36 14 chr12 39014602 39014742 -105267747 + MIR SINE MIR 30 172 -90 731 202 0 0 chr12 39016606 39016735 -105265754 - FLAM_C SINE Alu -4 129 1 215 353 26 17 chr12 39017151 39017267 -105265222 + MIR SINE MIR 24 140 -122 192 324 67 0 chr12 39017442 39017547 -105264942 - MIR SINE MIR -71 191 80 234 89 36 18 chr12 39018034 39018090 -105264399 + (TA)n Simple_repeat Simple_repeat 1 57 0 1616 197 79 37 chr12 39018321 39018803 -105263686 - MLT1D LTR MaLR -3 502 1 1028 214 52 108 chr12 39019124 39019511 -105262978 - MLT1A1 LTR MaLR 0 365 1 286 301 0 11 chr12 39020043 39020136 -105262353 + LTR67 LTR ERVL 434 525 -32 907 300 74 38 chr12 39020977 39021394 -105261095 - MLT1K LTR MaLR -10 578 147 538 310 29 12 chr12 39021396 39021567 -105260922 - MER91A DNA MER1_type 0 196 23 233 292 102 66 chr12 39021579 39021716 -105260773 - MLT1K LTR MaLR -430 158 17 7953 232 45 36 chr12 39022133 39024431 -105258058 + L1MA9 LINE L1 2295 4571 -2135 408 204 32 11 chr12 39024431 39024524 -105257965 + MER2 DNA MER2_type 1 95 -250 343 203 16 0 chr12 39024524 39024588 -105257901 - MER2 DNA MER2_type 0 345 281 7953 232 45 36 chr12 39024588 39025951 -105256538 + L1MA9 LINE L1 4571 6033 -673 1621 178 45 0 chr12 39025951 39026238 -105256251 + AluJo SINE Alu 1 300 -12 7953 232 45 36 chr12 39026238 39026912 -105255577 + L1MA9 LINE L1 6033 6700 -6 1407 200 90 1 chr12 39027090 39027554 -105254935 - Charlie1b DNA MER1_type 0 523 22 1006 189 40 78 chr12 39027967 39028263 -105254226 - AluJo SINE Alu -21 291 7 1494 191 14 10 chr12 39028331 39028619 -105253870 - AluJb SINE Alu -23 289 1 33 0 0 0 chr12 39028888 39028921 -105253568 + AT_rich Low_complexity Low_complexity 1 33 0 867 237 98 40 chr12 39029994 39030268 -105252221 - MLT1A2 LTR MaLR 0 374 85 255 271 113 18 chr12 39030632 39030812 -105251677 - MIR SINE MIR -49 213 1 2153 159 78 8 chr12 39031715 39032099 -105250390 - Tigger1 DNA MER2_type -942 1476 1066 1239 233 46 0 chr12 39032101 39032265 -105250224 - AluJb SINE Alu -16 296 112 207 0 0 0 chr12 39032265 39032288 -105250201 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1239 233 46 0 chr12 39032288 39032406 -105250083 - AluJb SINE Alu -200 112 1 816 199 27 0 chr12 39032864 39033010 -105249479 + AluJo SINE Alu 1 150 -162 1944 140 3 3 chr12 39033206 39033491 -105248998 + AluSq SINE Alu 3 287 -26 2025 142 0 0 chr12 39033733 39034035 -105248454 + AluSq SINE Alu 1 302 0 21 36 0 0 chr12 39034211 39034239 -105248250 + AT_rich Low_complexity Low_complexity 1 28 0 1597 171 0 38 chr12 39034998 39035290 -105247199 + AluJo SINE Alu 1 281 -31 297 0 0 0 chr12 39035291 39035324 -105247165 + (TC)n Simple_repeat Simple_repeat 2 34 0 352 123 27 0 chr12 39035324 39035397 -105247092 + (TA)n Simple_repeat Simple_repeat 1 75 0 950 254 112 40 chr12 39035399 39035880 -105246609 + L1P4 LINE L1 4650 5095 -1073 1641 137 105 14 chr12 39035880 39036165 -105246324 + AluSx SINE Alu 1 311 -1 950 254 112 40 chr12 39036165 39036449 -105246040 + L1P4 LINE L1 5095 5357 -811 2241 141 0 22 chr12 39036449 39036812 -105245677 - THE1A LTR MaLR 0 355 1 11200 114 4 1 chr12 39036812 39038387 -105244102 - THE1A-int LTR MaLR 0 1580 1 2469 108 3 43 chr12 39038387 39038757 -105243732 - THE1A LTR MaLR 0 355 1 950 254 112 40 chr12 39038757 39039075 -105243414 + L1P4 LINE L1 5356 5804 -364 1204 186 63 107 chr12 39039452 39039834 -105242655 + MLT1A1 LTR MaLR 1 365 0 297 0 0 0 chr12 39040038 39040071 -105242418 + (TG)n Simple_repeat Simple_repeat 2 34 0 250 182 18 0 chr12 39040076 39040131 -105242358 + CT-rich Low_complexity Low_complexity 1 56 0 279 93 0 0 chr12 39040135 39040178 -105242311 + (TG)n Simple_repeat Simple_repeat 2 44 0 2112 288 36 44 chr12 39040878 39041916 -105240573 + SST1 Satellite centromeric 1 1029 -534 700 207 29 33 chr12 39044466 39044671 -105237818 + MIR SINE MIR 64 262 0 * 1015 243 28 0 chr12 39044670 39044921 -105237568 + MIR SINE MIR 5 262 0 218 344 11 11 chr12 39045349 39045442 -105237047 - MIR SINE MIR -76 132 40 358 256 160 0 chr12 39045773 39045929 -105236560 - MIR SINE MIR -12 250 70 345 290 132 87 chr12 39046351 39046754 -105235735 + MLT1J2 LTR MaLR 9 429 -21 2002 153 0 3 chr12 39046818 39047112 -105235377 + AluSx SINE Alu 1 293 -19 393 349 40 0 chr12 39047153 39047328 -105235161 - MIR SINE MIR -32 230 49 289 227 133 0 chr12 39047575 39047650 -105234839 - MIR3 SINE MIR -48 160 76 2536 156 13 9 chr12 39048350 39048817 -105233672 - L1MB7 LINE L1 0 6184 5716 233 178 0 68 chr12 39049353 39049426 -105233063 - L2 LINE L2 -83 3230 3163 252 238 131 49 chr12 39049690 39049812 -105232677 - MIR SINE MIR -67 195 64 2039 140 6 10 chr12 39049881 39050195 -105232294 - AluSq SINE Alu 0 313 1 2001 117 34 24 chr12 39050843 39051134 -105231355 + AluSq SINE Alu 1 294 -19 700 176 0 0 chr12 39051143 39051251 -105231238 - FLAM_A SINE Alu -34 108 1 604 231 87 12 chr12 39051264 39051437 -105231052 - MIR SINE MIR -64 198 13 270 225 180 18 chr12 39052014 39052125 -105230364 - L2 LINE L2 -2 3270 3142 353 236 198 62 chr12 39052476 39052718 -105229771 + LTR33 LTR ERVL 12 286 -235 342 288 32 16 chr12 39052770 39052895 -105229594 + LTR33 LTR ERVL 390 516 -5 285 114 0 0 chr12 39053234 39053278 -105229211 - MIR SINE MIR -62 146 103 493 233 124 45 chr12 39053395 39053597 -105228892 + MIR SINE MIR 23 240 -22 283 235 62 0 chr12 39054498 39054579 -105227910 + MIR3 SINE MIR 108 193 -15 498 333 7 0 chr12 39055774 39055918 -105226571 + L2 LINE L2 3127 3271 -1 2179 127 7 0 chr12 39056256 39056563 -105225926 - AluSx SINE Alu -3 309 1 506 348 63 21 chr12 39056564 39056796 -105225693 - L2 LINE L2 -8 3305 3052 2277 105 0 0 chr12 39056796 39057125 -105225364 + AluSp SINE Alu 1 329 0 506 348 63 21 chr12 39057125 39057224 -105225265 - L2 LINE L2 -261 3052 2959 365 273 182 0 chr12 39057365 39057508 -105224981 + MER5A DNA MER1_type 21 189 0 425 225 95 35 chr12 39058246 39058415 -105224074 + MIR SINE MIR 13 191 -71 1690 153 73 0 chr12 39058415 39058676 -105223813 + AluJb SINE Alu 1 280 -32 266 229 0 0 chr12 39058748 39058796 -105223693 + MIR SINE MIR 37 84 -124 2090 134 3 3 chr12 39058833 39059138 -105223351 - AluSx SINE Alu -7 305 1 264 325 56 0 chr12 39059139 39059265 -105223224 + MIR3 SINE MIR 70 202 -6 227 54 27 0 chr12 39059613 39059650 -105222839 + (TG)n Simple_repeat Simple_repeat 2 39 0 343 317 48 0 chr12 39059944 39060089 -105222400 - L2 LINE L2 -20 3252 3101 1881 166 3 16 chr12 39062460 39062768 -105219721 - AluJb SINE Alu -8 304 1 474 263 53 38 chr12 39063180 39063313 -105219176 - L2 LINE L2 -1 3271 3137 573 226 83 33 chr12 39063330 39063511 -105218978 - L2 LINE L2 -2 3311 3122 2002 129 0 3 chr12 39064424 39064711 -105217778 - AluSx SINE Alu -5 307 22 1383 137 99 99 chr12 39064717 39065010 -105217479 - AluJo SINE Alu -11 301 9 364 228 109 0 chr12 39065501 39065593 -105216896 + L2 LINE L2 3202 3303 -10 198 331 83 24 chr12 39065565 39065734 -105216755 - L2 LINE L2 -783 2531 2353 * 22 88 0 0 chr12 39067287 39067344 -105215145 + AT_rich Low_complexity Low_complexity 1 57 0 334 217 19 29 chr12 39068401 39068562 -105213927 - MIR SINE MIR -2 260 29 770 99 9 0 chr12 39068671 39068782 -105213707 + HY1 scRNA scRNA 1 112 0 204 292 21 0 chr12 39068821 39068869 -105213620 + MIR SINE MIR 37 85 -123 661 279 60 0 chr12 39068974 39069157 -105213332 + MIR SINE MIR 59 252 -10 2199 124 0 3 chr12 39069338 39069644 -105212845 + AluSx SINE Alu 1 305 -7 210 158 18 105 chr12 39069839 39069896 -105212593 + MIR3 SINE MIR 157 208 0 1342 250 113 26 chr12 39072234 39072411 -105210078 + L2 LINE L2 2537 2697 -616 2076 139 0 0 chr12 39072411 39072699 -105209790 + AluSg SINE Alu 1 288 -22 1342 250 113 26 chr12 39072699 39073241 -105209248 + L2 LINE L2 2697 3290 -23 209 276 16 123 chr12 39073600 39073843 -105208646 + L3b LINE CR1 1178 1394 -189 242 294 64 37 chr12 39074561 39074670 -105207819 - MIR3 SINE MIR -86 122 11 414 253 11 0 chr12 39074925 39075016 -105207473 + MIR SINE MIR 56 147 -115 317 230 180 0 chr12 39076646 39076746 -105205743 + L2 LINE L2 3153 3270 -2 396 310 19 0 chr12 39076747 39076905 -105205584 + MIR3 SINE MIR 48 208 0 23 0 0 0 chr12 39077369 39077392 -105205097 + GC_rich Low_complexity Low_complexity 1 23 0 208 337 41 20 chr12 39077635 39077733 -105204756 + MIR SINE MIR 44 143 -119 998 229 24 43 chr12 39078592 39078775 -105203714 - MIR SINE MIR -2 260 82 2059 123 2 121 chr12 39078775 39079189 -105203300 + MER47A DNA MER2_type 1 365 -1 998 229 24 43 chr12 39079189 39079258 -105203231 - MIR SINE MIR -180 82 13 415 267 68 78 chr12 39079196 39079387 -105203102 + MIR SINE MIR 13 201 -61 * 479 269 48 41 chr12 39079545 39079690 -105202799 - MIR SINE MIR -90 172 27 929 128 23 41 chr12 39080508 39080637 -105201852 + MER5B DNA MER1_type 9 136 -42 2281 110 3 3 chr12 39080637 39080947 -105201542 + AluSq SINE Alu 1 310 -3 929 128 23 41 chr12 39080947 39080989 -105201500 + MER5B DNA MER1_type 136 177 -1 595 276 198 0 chr12 39081146 39081363 -105201126 - MIR SINE MIR -1 261 2 339 78 0 0 chr12 39084079 39084130 -105198359 + (TC)n Simple_repeat Simple_repeat 2 52 0 910 211 0 0 chr12 39084482 39084648 -105197841 + FRAM SINE Alu 1 166 0 186 43 0 0 chr12 39085072 39085095 -105197394 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 10080 29 0 198 chr12 39085096 39086837 -105195652 + SVA Other Other 3 1407 0 373 191 0 0 chr12 39086844 39086912 -105195577 - MER53 DNA DNA 0 189 122 186 127 32 48 chr12 39087153 39087216 -105195273 + C-rich Low_complexity Low_complexity 1 62 0 183 80 0 0 chr12 39088715 39088740 -105193749 + (TG)n Simple_repeat Simple_repeat 1 25 0 202 91 0 45 chr12 39088823 39088867 -105193622 + (TAA)n Simple_repeat Simple_repeat 1 42 0 468 35 0 0 chr12 39089891 39089949 -105192540 + (CA)n Simple_repeat Simple_repeat 1 58 0 554 198 0 78 chr12 39091437 39091654 -105190835 + SST1 Satellite centromeric 1363 1562 -1 215 233 17 0 chr12 39091678 39091738 -105190751 + CT-rich Low_complexity Low_complexity 2 62 0 2506 266 51 54 chr12 39092568 39094476 -105188013 - SST1 Satellite centromeric -13 2190 251 260 51 0 26 chr12 39094476 39094515 -105187974 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 2506 266 51 54 chr12 39094515 39094766 -105187723 - SST1 Satellite centromeric -1952 251 1 222 220 17 0 chr12 39095506 39095565 -105186924 + GA-rich Low_complexity Low_complexity 2 61 0 324 119 0 0 chr12 39095565 39095624 -105186865 + (CA)n Simple_repeat Simple_repeat 2 60 0 2389 266 69 54 chr12 39095645 39096917 -105185572 - SST1 Satellite centromeric -11 1552 252 213 65 0 0 chr12 39096917 39096948 -105185541 + (CCCCAG)n Simple_repeat Simple_repeat 3 33 0 2389 266 69 54 chr12 39096948 39097204 -105185285 - SST1 Satellite centromeric -1311 252 1 967 199 5 5 chr12 39097495 39101346 -105181143 + ALR/Alpha Satellite centromeric 1 3850 -29 263 184 11 0 chr12 39102001 39102088 -105180401 + (CA)n Simple_repeat Simple_repeat 1 88 0 370 291 62 64 chr12 39102094 39102483 -105180006 - SST1 Satellite centromeric -28 1535 1148 413 297 67 61 chr12 39102909 39103447 -105179042 - SST1 Satellite centromeric -891 672 132 240 59 0 0 chr12 39104535 39104569 -105177920 + (CA)n Simple_repeat Simple_repeat 1 34 0 405 284 126 39 chr12 39104957 39105450 -105177039 - SST1 Satellite centromeric -805 758 223 944 196 7 10 chr12 39105650 39112245 -105170244 + ALR/Alpha Satellite centromeric 1 6575 -7 878 214 8 7 chr12 39112258 39112653 -105169836 + ALR/Alpha Satellite centromeric 1 394 -1227 2171 84 56 0 chr12 39112653 39112939 -105169550 + AluY SINE Alu 1 302 -9 878 214 8 7 chr12 39112939 39113873 -105168616 + ALR/Alpha Satellite centromeric 394 1617 -4 2795 30 0 0 chr12 39113874 39114205 -105168284 - L1PA3 LINE L1 0 6155 5825 1494 23 0 0 chr12 39114205 39114380 -105168109 + L1PA3 LINE L1 5640 5814 -341 1025 210 10 2 chr12 39114380 39116159 -105166330 + ALR/Alpha Satellite centromeric 1 1791 -18 872 210 0 0 chr12 39116202 39116359 -105166130 + AluJb SINE Alu 137 293 -19 1830 172 0 0 chr12 39116364 39116649 -105165840 + AluY SINE Alu 3 287 -24 21 57 0 0 chr12 39116649 39116684 -105165805 + AT_rich Low_complexity Low_complexity 1 35 0 4943 169 29 10 chr12 39116689 39117630 -105164859 - L1MC2 LINE L1 -25 6319 5361 265 354 63 19 chr12 39118154 39118312 -105164177 - MIR SINE MIR -97 165 1 261 0 0 0 chr12 39118939 39118968 -105163521 + (TC)n Simple_repeat Simple_repeat 2 30 0 225 0 0 0 chr12 39118967 39118992 -105163497 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 1901 141 29 16 chr12 39118994 39119300 -105163189 - AluSg SINE Alu 0 310 1 888 265 48 7 chr12 39119326 39119635 -105162854 - L1MA9 LINE L1 -38 6274 5953 311 156 0 0 chr12 39119662 39119707 -105162782 - Alu SINE Alu -255 46 2 1510 147 4 28 chr12 39120060 39120312 -105162177 - AluSg/x SINE Alu -2 310 65 290 208 52 21 chr12 39120356 39120452 -105162037 - L1ME3A LINE L1 -220 5950 5852 959 131 0 0 chr12 39120491 39120628 -105161861 + AluSq/x SINE Alu 1 137 -175 1938 126 3 17 chr12 39120633 39120935 -105161554 + AluSc SINE Alu 9 306 -3 * 1984 145 3 0 chr12 39120934 39121244 -105161245 + AluSx SINE Alu 1 311 -1 420 299 52 26 chr12 39121260 39121615 -105160874 - L1ME3A LINE L1 -401 5769 5421 1893 134 17 3 chr12 39121746 39122037 -105160452 - AluSq SINE Alu -10 303 9 993 195 0 0 chr12 39122172 39122341 -105160148 + AluSg/x SINE Alu 130 298 -12 1247 85 28 11 chr12 39122491 39122667 -105159822 + AluY SINE Alu 113 291 -20 1363 189 5 2 chr12 39122682 39122961 -105159528 + L1P4 LINE L1 5546 5822 -352 2177 113 3 0 chr12 39122973 39123274 -105159215 - AluSp SINE Alu -8 305 4 1871 164 0 0 chr12 39123290 39123588 -105158901 - AluSq SINE Alu -15 298 1 2097 105 0 0 chr12 39124152 39124437 -105158052 + AluY SINE Alu 1 285 -26 36 23 0 0 chr12 39124437 39124480 -105158009 + AT_rich Low_complexity Low_complexity 1 43 0 2914 173 11 60 chr12 39124480 39124739 -105157750 - MER57B-int LTR ERV1 -6998 539 322 1967 142 3 0 chr12 39124739 39125035 -105157454 + AluSx SINE Alu 6 302 -10 2914 173 11 60 chr12 39125035 39125342 -105157147 - MER57B-int LTR ERV1 -7215 322 1 2644 149 12 2 chr12 39125342 39125772 -105156717 - MER57B LTR ERV1 0 434 1 1030 108 0 19 chr12 39125772 39125929 -105156560 + MER4E LTR ERV1 613 766 0 1038 239 58 12 chr12 39125929 39126235 -105156254 + L1ME2 LINE L1 5802 6117 -45 291 290 0 0 chr12 39126763 39126825 -105155664 - LTR33 LTR ERVL -153 368 307 368 314 64 0 chr12 39127072 39127212 -105155277 - LTR16C LTR ERVL -109 382 234 656 318 132 41 chr12 39127479 39128115 -105154374 - L2 LINE L2 -68 3245 2544 184 290 87 43 chr12 39128267 39128405 -105154084 + MIR SINE MIR 65 208 -54 32 0 0 0 chr12 39129708 39129740 -105152749 + AT_rich Low_complexity Low_complexity 1 32 0 2604 246 69 16 chr12 39129740 39130533 -105151956 + L1ME1 LINE L1 5316 6150 -16 452 288 54 48 chr12 39130622 39131122 -105151367 + L1ME3A LINE L1 3345 3847 -2299 * 455 204 72 98 chr12 39131117 39131211 -105151278 + L1MC4 LINE L1 7759 7854 -188 1981 145 76 17 chr12 39131211 39131555 -105150934 - THE1B LTR MaLR 0 364 1 455 204 72 98 chr12 39131555 39131724 -105150765 + L1MC4 LINE L1 7854 8015 -27 316 340 145 35 chr12 39131761 39132161 -105150328 + L1ME3A LINE L1 3832 4275 -1871 882 265 98 15 chr12 39132182 39132662 -105149827 + L1ME3A LINE L1 4298 4817 -1329 232 309 123 0 chr12 39132668 39132830 -105149659 + L1ME3A LINE L1 4931 5112 -1034 1532 294 93 22 chr12 39132851 39133798 -105148691 + L1ME3A LINE L1 5152 6166 -4 22 0 0 0 chr12 39134767 39134789 -105147700 + AT_rich Low_complexity Low_complexity 1 22 0 399 311 179 36 chr12 39134924 39135455 -105147034 - L1 LINE L1 -3325 2821 2215 410 333 98 35 chr12 39135521 39135920 -105146569 - LTR33 LTR ERVL -67 454 31 1883 317 21 11 chr12 39136803 39137422 -105145067 - ERVL LTR ERVL -1084 4680 4056 547 346 119 11 chr12 39137476 39138072 -105144417 - ERVL LTR ERVL -2171 3593 2882 711 162 7 37 chr12 39138129 39138265 -105144224 + FLAM_C SINE Alu 1 132 -1 561 317 39 30 chr12 39138302 39138731 -105143758 - LTR33 LTR ERVL -57 464 1 5710 13 0 0 chr12 39138922 39139807 -105142682 - L1HS LINE L1 -249 5906 5022 2181 12 0 0 chr12 39139805 39140054 -105142435 + L1HS LINE L1 5905 6153 -2 * 22 35 0 0 chr12 39140469 39140498 -105141991 + AT_rich Low_complexity Low_complexity 1 29 0 509 338 101 31 chr12 39142354 39142742 -105139747 + L3 LINE CR1 1162 1576 -1 297 332 83 36 chr12 39142831 39143024 -105139465 + MIR SINE MIR 3 204 -58 180 0 0 0 chr12 39143390 39143410 -105139079 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 454 343 72 46 chr12 39143520 39144482 -105138007 + L1MEc LINE L1 22 1008 -5388 459 329 25 16 chr12 39144519 39144835 -105137654 + L1MEc LINE L1 1466 1784 -4612 11563 43 2 5 chr12 39145568 39147782 -105134707 + L1PA4 LINE L1 3928 6146 -9 234 260 29 48 chr12 39147897 39148001 -105134488 + L1ME2 LINE L1 5713 5814 -356 735 247 89 23 chr12 39148011 39148270 -105134219 + L1ME2 LINE L1 5888 6163 -1 1792 260 36 46 chr12 39148509 39149140 -105133349 + MLT1E2 LTR MaLR 1 625 -1 1257 157 143 50 chr12 39149271 39149614 -105132875 - THE1C LTR MaLR 0 375 1 400 340 153 0 chr12 39151060 39151263 -105131226 - MIR SINE MIR -4 258 25 994 207 36 44 chr12 39151508 39151759 -105130730 + MER96B DNA MER1_type? 1 249 -168 22 35 0 0 chr12 39152019 39152048 -105130441 + AT_rich Low_complexity Low_complexity 1 29 0 394 363 62 14 chr12 39152622 39152911 -105129578 + HAL1b LINE L1 631 933 -415 1676 149 53 53 chr12 39153495 39153674 -105128815 + THE1C LTR MaLR 1 179 -196 1877 154 3 10 chr12 39153674 39153966 -105128523 + AluSx SINE Alu 7 296 -16 1676 149 53 53 chr12 39153966 39154161 -105128328 + THE1C LTR MaLR 178 375 0 1496 147 4 0 chr12 39154247 39154485 -105128004 - Tigger5 DNA MER2_type 0 2323 2085 320 222 0 16 chr12 39154506 39154569 -105127920 - Tigger5 DNA MER2_type -2261 62 1 229 291 0 0 chr12 39154588 39154674 -105127815 + (CAGA)n Simple_repeat Simple_repeat 4 89 0 272 269 78 47 chr12 39154766 39154959 -105127530 + L1ME3A LINE L1 4132 4330 -1816 263 226 0 0 chr12 39155036 39155089 -105127400 - MER96B DNA MER1_type? -120 55 3 514 309 6 0 chr12 39155102 39155267 -105127222 + L1ME3A LINE L1 5401 5566 -604 230 259 0 0 chr12 39155272 39155326 -105127163 + L1ME3A LINE L1 5664 5717 -453 379 237 0 11 chr12 39155356 39155449 -105127040 + L1ME3A LINE L1 5794 5885 -285 1248 217 120 57 chr12 39155463 39155833 -105126656 - MLT1D LTR MaLR 0 505 97 1982 130 0 16 chr12 39155833 39156149 -105126340 - AluSx SINE Alu -1 311 1 1248 217 120 57 chr12 39156149 39156253 -105126236 - MLT1D LTR MaLR -408 97 1 30 83 0 0 chr12 39156474 39156546 -105125943 + AT_rich Low_complexity Low_complexity 1 72 0 24 0 0 0 chr12 39156620 39156644 -105125845 + AT_rich Low_complexity Low_complexity 1 24 0 236 128 209 47 chr12 39156785 39156871 -105125618 - L1ME4a LINE L1 -41 6080 5981 * 272 198 103 52 chr12 39156843 39156959 -105125530 + HAL1b LINE L1 1225 1346 -2 303 290 91 91 chr12 39157031 39157252 -105125237 - MIR SINE MIR -12 250 30 21 57 0 0 chr12 39158696 39158731 -105123758 + AT_rich Low_complexity Low_complexity 1 35 0 1876 49 16 8 chr12 39159031 39159276 -105123213 + AluY SINE Alu 64 310 -1 295 137 27 0 chr12 39159930 39160003 -105122486 + (TA)n Simple_repeat Simple_repeat 2 76 0 222 343 52 30 chr12 39160205 39160339 -105122150 - MIR SINE MIR -45 217 81 420 185 12 0 chr12 39160385 39160466 -105122023 + MER94 DNA DNA 4 85 -49 382 313 107 25 chr12 39160632 39160913 -105121576 - L1ME4a LINE L1 -174 5947 5644 1293 211 45 23 chr12 39161073 39161381 -105121108 - MLT1A2 LTR MaLR 0 374 60 231 278 37 0 chr12 39163242 39163296 -105119193 + L2 LINE L2 3217 3272 0 761 22 0 0 chr12 39163431 39163520 -105118969 - L1PA3 LINE L1 -4 6151 6063 521 42 0 0 chr12 39163522 39163594 -105118895 + L1PA3 LINE L1 5986 6057 -98 21 36 0 0 chr12 39164056 39164084 -105118405 + AT_rich Low_complexity Low_complexity 1 28 0 3007 154 84 24 chr12 39164841 39165611 -105116878 + MER21A LTR ERV1 1 931 0 21 57 0 0 chr12 39166252 39166287 -105116202 + AT_rich Low_complexity Low_complexity 1 35 0 1295 190 0 13 chr12 39166907 39167133 -105115356 + MER41D LTR ERV1 335 557 0 514 311 142 18 chr12 39167138 39167746 -105114743 - HAL1 LINE L1 -364 2143 1612 210 37 0 0 chr12 39167746 39167773 -105114716 + (TG)n Simple_repeat Simple_repeat 2 28 0 514 311 142 18 chr12 39167773 39168901 -105113588 - HAL1 LINE L1 -895 1612 133 1911 153 0 28 chr12 39169627 39169948 -105112541 + AluSx SINE Alu 1 312 0 1824 135 54 43 chr12 39171387 39171758 -105110731 + THE1C LTR MaLR 1 375 0 39 68 0 0 chr12 39172193 39172267 -105110222 + AT_rich Low_complexity Low_complexity 1 74 0 2113 95 3 14 chr12 39172954 39173250 -105109239 - AluY SINE Alu -18 293 1 1773 161 3 10 chr12 39173511 39173809 -105108680 + AluSx SINE Alu 1 296 -16 512 208 61 80 chr12 39174381 39174593 -105107896 - L1MC5 LINE L1 -763 7198 6991 28 61 0 0 chr12 39174624 39174673 -105107816 + AT_rich Low_complexity Low_complexity 1 49 0 516 310 63 34 chr12 39174758 39175026 -105107463 + L1MB1 LINE L1 5 280 -5611 431 340 45 54 chr12 39175170 39175553 -105106936 + L1MB1 LINE L1 186 513 -5378 619 325 13 4 chr12 39175736 39175970 -105106519 + L1MB1 LINE L1 694 929 -4962 9501 210 35 23 chr12 39175984 39178045 -105104444 + L1MB1 LINE L1 2531 4566 -1426 1653 147 0 4 chr12 39178045 39178319 -105104170 + AluSx SINE Alu 33 305 0 9501 210 35 23 chr12 39178319 39179294 -105103195 + L1MB1 LINE L1 4566 5616 -376 826 82 0 34 chr12 39179294 39179441 -105103048 + (TA)n Simple_repeat Simple_repeat 1 142 0 9501 210 35 23 chr12 39179441 39179810 -105102679 + L1MB1 LINE L1 5616 5979 -13 1023 326 74 24 chr12 39179818 39180427 -105102062 - L2 LINE L2 -90 3223 2574 1271 245 33 12 chr12 39181958 39182289 -105100200 + MLT1A1 LTR MaLR 26 363 -2 450 111 0 28 chr12 39182848 39182920 -105099569 - AluJo SINE Alu -8 304 235 301 222 28 0 chr12 39182920 39182992 -105099497 - MER52A LTR ERV1 0 1755 1682 * 3471 194 113 83 chr12 39182982 39184120 -105098369 - MER52A LTR ERV1 -559 1196 25 1257 210 0 12 chr12 39184125 39184368 -105098121 - AluJo SINE Alu -72 240 1 1309 199 51 67 chr12 39185418 39185503 -105096986 + MLT1A1 LTR MaLR 1 86 -279 2083 131 0 0 chr12 39185503 39185833 -105096656 + AluSg SINE Alu 1 330 0 1309 199 51 67 chr12 39185833 39186117 -105096372 + MLT1A1 LTR MaLR 86 365 0 228 262 85 71 chr12 39187944 39188085 -105094404 - L1ME4a LINE L1 -4 6117 5975 1452 201 0 34 chr12 39189584 39189877 -105092612 - AluJo SINE Alu -21 291 9 301 302 113 19 chr12 39190428 39190534 -105091955 - L2 LINE L2 -16 3297 3182 1946 144 14 14 chr12 39190977 39191324 -105091165 - MER7A DNA MER2_type -1 345 1 4073 93 2 7 chr12 39192326 39192904 -105089585 - L1PA8 LINE L1 -2 6170 5596 299 320 5 25 chr12 39242910 39243102 -105039387 - SST1 Satellite centromeric -1098 465 277 219 36 0 0 chr12 39243102 39243130 -105039359 + (CCCCAG)n Simple_repeat Simple_repeat 2 29 0 246 231 0 0 chr12 39243146 39243198 -105039291 - SST1 Satellite centromeric -1511 52 1 214 272 25 0 chr12 39243899 39243980 -105038509 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 * 221 180 20 0 chr12 39243937 39243987 -105038502 + GA-rich Low_complexity Low_complexity 2 52 0 396 55 0 0 chr12 39243996 39244051 -105038438 + (CA)n Simple_repeat Simple_repeat 2 56 0 2941 279 52 56 chr12 39244072 39245630 -105036859 - SST1 Satellite centromeric -11 1552 1 216 163 0 0 chr12 39246329 39246372 -105036117 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 206 16 0 chr12 39246376 39246439 -105036050 + GA-rich Low_complexity Low_complexity 1 64 0 270 0 0 0 chr12 39247808 39247838 -105034651 + (TA)n Simple_repeat Simple_repeat 2 31 0 225 94 0 0 chr12 39249215 39249247 -105033242 + (GA)n Simple_repeat Simple_repeat 2 33 0 903 291 71 2 chr12 39250580 39251044 -105031445 - L1M4 LINE L1 -3404 2742 2247 26 30 0 0 chr12 39251045 39251078 -105031411 + AT_rich Low_complexity Low_complexity 1 33 0 783 182 176 6 chr12 39251247 39251417 -105031072 - AluSg/x SINE Alu -27 282 84 330 229 84 0 chr12 39251417 39251500 -105030989 + MER119 DNA MER1_type 75 164 -419 2041 132 0 28 chr12 39252170 39252489 -105030000 - AluSg SINE Alu 0 310 1 279 322 42 8 chr12 39252823 39252941 -105029548 - MER94 DNA DNA -2 132 11 1870 223 85 8 chr12 39253039 39253523 -105028966 - MER90 LTR ERV1 0 614 94 198 0 0 0 chr12 39253621 39253643 -105028846 + (T)n Simple_repeat Simple_repeat 1 22 0 547 256 126 14 chr12 39254306 39254513 -105027976 + MIR SINE MIR 30 259 -3 181 250 135 0 chr12 39254929 39254981 -105027508 - MIR SINE MIR -133 75 17 344 243 29 48 chr12 39255038 39255141 -105027348 - MIR SINE MIR -70 192 92 218 369 18 9 chr12 39255355 39255466 -105027023 + L2 LINE L2 2748 2859 -455 438 20 0 0 chr12 39255662 39255713 -105026776 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1715 148 0 24 chr12 39255735 39256026 -105026463 - AluSq SINE Alu -19 294 11 1934 118 17 10 chr12 39256140 39256437 -105026052 - AluSq SINE Alu -14 299 1 908 136 7 0 chr12 39256440 39256580 -105025909 - AluY SINE Alu -170 141 1 204 40 0 0 chr12 39257500 39257525 -105024964 + (CA)n Simple_repeat Simple_repeat 2 26 0 1250 173 120 33 chr12 39257602 39257903 -105024586 - SST1 Satellite centromeric 0 1563 1237 844 164 13 13 chr12 39257908 39258060 -105024429 + AluSg/x SINE Alu 157 308 -4 7404 149 23 17 chr12 39258150 39259534 -105022955 - SST1 Satellite centromeric -170 1393 1 1916 314 59 38 chr12 39260084 39261045 -105021444 - SST1 Satellite centromeric -324 1239 245 324 94 0 0 chr12 39261045 39261098 -105021391 + (CCCCAG)n Simple_repeat Simple_repeat 5 57 0 1916 314 59 38 chr12 39261098 39261349 -105021140 - SST1 Satellite centromeric -1318 245 1 222 200 30 50 chr12 39261509 39261609 -105020880 + GA-rich Low_complexity Low_complexity 5 102 0 247 203 17 0 chr12 39262156 39262215 -105020274 + GA-rich Low_complexity Low_complexity 1 60 0 462 18 0 0 chr12 39262216 39262271 -105020218 + (CA)n Simple_repeat Simple_repeat 2 56 0 2458 272 45 61 chr12 39262309 39263709 -105018780 - SST1 Satellite centromeric -27 1536 159 203 203 34 0 chr12 39263792 39263851 -105018638 + GA-rich Low_complexity Low_complexity 1 61 0 456 72 0 0 chr12 39263851 39263920 -105018569 + (CA)n Simple_repeat Simple_repeat 2 70 0 2188 258 75 60 chr12 39263941 39265214 -105017275 - SST1 Satellite centromeric -11 1552 255 258 56 0 0 chr12 39265214 39265250 -105017239 + (CCCCAG)n Simple_repeat Simple_repeat 3 38 0 2188 258 75 60 chr12 39265250 39265349 -105017140 - SST1 Satellite centromeric -1308 255 159 651 65 0 0 chr12 39265490 39265583 -105016906 + (CA)n Simple_repeat Simple_repeat 2 94 0 2387 250 63 56 chr12 39265604 39266889 -105015600 - SST1 Satellite centromeric -11 1552 256 267 54 0 0 chr12 39266889 39266926 -105015563 + (CCCCAG)n Simple_repeat Simple_repeat 2 38 0 2387 250 63 56 chr12 39266926 39267025 -105015464 - SST1 Satellite centromeric -1307 256 159 504 68 0 0 chr12 39267167 39267240 -105015249 + (CA)n Simple_repeat Simple_repeat 2 74 0 2499 278 57 46 chr12 39267261 39268544 -105013945 - SST1 Satellite centromeric -11 1552 247 345 75 0 0 chr12 39268544 39268597 -105013892 + (CCCCAG)n Simple_repeat Simple_repeat 5 57 0 2499 278 57 46 chr12 39268597 39268847 -105013642 - SST1 Satellite centromeric -1316 247 1 211 222 81 30 chr12 39269007 39269106 -105013383 + (CAGGG)n Simple_repeat Simple_repeat 2 105 0 222 220 17 0 chr12 39269654 39269713 -105012776 + GA-rich Low_complexity Low_complexity 2 61 0 465 62 0 0 chr12 39269713 39269778 -105012711 + (CA)n Simple_repeat Simple_repeat 2 66 0 2971 267 70 43 chr12 39269782 39271051 -105011438 - SST1 Satellite centromeric -1 1562 244 216 0 0 0 chr12 39271051 39271075 -105011414 + (CCCCAG)n Simple_repeat Simple_repeat 4 27 0 2971 267 70 43 chr12 39271075 39271326 -105011163 - SST1 Satellite centromeric -1319 244 1 215 192 27 41 chr12 39272063 39272136 -105010353 + (CAGAGA)n Simple_repeat Simple_repeat 6 77 0 2723 269 57 61 chr12 39272137 39273705 -105008784 - SST1 Satellite centromeric -1 1562 1 233 293 0 0 chr12 39274402 39274501 -105007988 + (CAGA)n Simple_repeat Simple_repeat 2 100 0 * 271 217 14 0 chr12 39274448 39274517 -105007972 + GA-rich Low_complexity Low_complexity 2 71 0 279 0 0 0 chr12 39274517 39274548 -105007941 + (CA)n Simple_repeat Simple_repeat 2 32 0 1036 204 60 107 chr12 39274752 39275135 -105007354 - MLT1A1 LTR MaLR 0 365 1 256 45 0 45 chr12 39275537 39275581 -105006908 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 743 227 245 9 chr12 39275591 39275917 -105006572 + L1MC3 LINE L1 5965 6367 -1418 2073 122 0 3 chr12 39275934 39276237 -105006252 + AluSx SINE Alu 1 302 -10 713 192 35 20 chr12 39276246 39276414 -105006075 + L1M4 LINE L1 2912 3076 -3070 2599 23 0 0 chr12 39276414 39276715 -105005774 + AluY SINE Alu 1 301 -10 713 192 35 20 chr12 39276715 39276726 -105005763 + L1M4 LINE L1 3076 3085 -3061 1919 113 0 30 chr12 39276726 39277026 -105005463 + AluSx SINE Alu 1 291 -21 713 192 35 20 chr12 39277026 39277052 -105005437 + L1M4 LINE L1 3085 3112 -3034 850 199 6 0 chr12 39277170 39277331 -105005158 - AluJo/FRAM SINE Alu -4 298 137 1251 112 11 0 chr12 39277334 39277521 -105004968 - AluSc SINE Alu -3 306 118 2557 33 0 3 chr12 39277560 39277860 -105004629 - AluY SINE Alu -12 299 1 246 32 0 0 chr12 39277876 39277907 -105004582 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 585 204 9 0 chr12 39277911 39278024 -105004465 - FLAM_C SINE Alu -19 114 1 832 248 63 54 chr12 39278164 39278649 -105003840 - L1ME LINE L1 -678 5488 4997 787 133 0 33 chr12 39278934 39279054 -105003435 - AluY SINE Alu -194 117 2 1007 136 58 10 chr12 39280076 39280282 -105002207 + MER33 DNA MER1_type 1 216 -108 1139 245 160 43 chr12 39280304 39280774 -105001715 + L1MC4 LINE L1 7278 7802 -240 883 289 92 24 chr12 39280777 39281244 -105001245 + ERVL LTR ERVL 4116 4614 -1150 338 202 0 19 chr12 39281386 39281490 -105000999 + (ATG)n Simple_repeat Simple_repeat 3 104 0 315 217 94 109 chr12 39281904 39282008 -105000481 - MIR SINE MIR -21 241 138 2477 190 16 4 chr12 39282008 39282497 -104999992 - L1MB2 LINE L1 -7 6164 5670 315 217 94 109 chr12 39282497 39282530 -104999959 - MIR SINE MIR -124 138 106 227 274 32 0 chr12 39282807 39282869 -104999620 - L2 LINE L2 -1 3312 3249 588 282 56 55 chr12 39283012 39283277 -104999212 - MIR SINE MIR -1 261 5 183 189 27 0 chr12 39283714 39283751 -104998738 + MIR SINE MIR 108 145 -63 311 238 69 20 chr12 39284217 39284318 -104998171 - L1ME3A LINE L1 -221 5949 5844 23 0 0 0 chr12 39284374 39284397 -104998092 + AT_rich Low_complexity Low_complexity 1 23 0 346 315 181 8 chr12 39284411 39284720 -104997769 - L1ME3A LINE L1 -479 5642 5322 942 128 0 0 chr12 39284858 39284999 -104997490 - AluSg/x SINE Alu -18 294 154 3841 187 54 7 chr12 39285000 39286075 -104996414 - L1MB7 LINE L1 -69 6115 4997 663 281 126 29 chr12 39286234 39286972 -104995517 - L1MEd LINE L1 -4576 1734 896 271 321 36 58 chr12 39287090 39287227 -104995262 + MIR SINE MIR 110 243 -19 2036 120 7 0 chr12 39287493 39287801 -104994688 + AluY SINE Alu 1 310 -1 504 261 52 33 chr12 39288420 39288573 -104993916 - MIR SINE MIR -99 163 8 681 236 94 43 chr12 39288576 39288809 -104993680 + MIR SINE MIR 17 261 -1 444 226 0 0 chr12 39289684 39289808 -104992681 + (TCCA)n Simple_repeat Simple_repeat 3 126 0 191 288 225 0 chr12 39290005 39290085 -104992404 - MIR SINE MIR -64 144 47 313 314 118 13 chr12 39290241 39290412 -104992077 + MIR SINE MIR 26 204 -58 328 203 0 0 chr12 39290511 39290570 -104991919 - MIR SINE MIR -89 119 61 321 242 52 92 chr12 39290578 39290731 -104991758 + MIR3 SINE MIR 35 181 -27 186 305 264 19 chr12 39292005 39292323 -104990166 - L2 LINE L2 -340 2974 2579 369 229 0 0 chr12 39292992 39293097 -104989392 + (ATG)n Simple_repeat Simple_repeat 3 107 0 566 210 0 11 chr12 39293123 39293304 -104989185 + (ATG)n Simple_repeat Simple_repeat 2 180 0 307 256 18 85 chr12 39293510 39293642 -104988847 - L1ME LINE L1 -544 5620 5481 2386 106 11 44 chr12 39293642 39294009 -104988480 + THE1A LTR MaLR 1 355 0 10886 124 7 1 chr12 39294009 39295579 -104986910 + THE1A-int LTR MaLR 1 1580 0 2110 143 14 22 chr12 39295579 39295937 -104986552 + THE1A LTR MaLR 1 355 0 307 256 18 85 chr12 39295937 39295966 -104986523 - L1ME LINE L1 -680 5484 5468 22 0 0 0 chr12 39296108 39296130 -104986359 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 39297042 39297067 -104985422 + AT_rich Low_complexity Low_complexity 1 25 0 39 38 0 0 chr12 39297735 39297788 -104984701 + AT_rich Low_complexity Low_complexity 1 53 0 227 297 29 80 chr12 39299052 39299227 -104983262 + MLT1E2 LTR MaLR 8 173 -453 623 150 52 146 chr12 39301159 39301426 -104981063 - L1MA9 LINE L1 -1 6311 6070 1408 196 39 4 chr12 39301443 39301723 -104980766 - AluJo SINE Alu -11 301 12 1887 207 49 30 chr12 39301734 39302890 -104979599 - L1MA9 LINE L1 -527 5785 4560 2087 104 0 36 chr12 39302890 39303199 -104979290 - AluSx SINE Alu -12 300 3 1887 207 49 30 chr12 39303199 39303511 -104978978 - L1MA9 LINE L1 -1752 4560 4255 243 0 0 0 chr12 39303902 39303929 -104978560 + (TG)n Simple_repeat Simple_repeat 2 28 0 1024 282 52 36 chr12 39304348 39305146 -104977343 + L1M4 LINE L1 3396 4266 -1880 1271 186 49 85 chr12 39305146 39305534 -104976955 - LTR47B LTR ERVL -69 374 1 2108 349 58 15 chr12 39305728 39306873 -104975616 - PABL_B-int LTR ERV1 -321 6801 5607 511 356 33 22 chr12 39307512 39307865 -104974624 - HERVL18 LTR ERVL -1249 4206 3762 255 382 0 6 chr12 39308545 39308702 -104973787 - HERVL18 LTR ERVL -2295 3048 2893 250 386 15 10 chr12 39309097 39309294 -104973195 - HERVL18 LTR ERVL -4326 1721 1524 198 277 0 84 chr12 39310968 39311051 -104971438 + MIR SINE MIR 117 192 -70 189 333 0 42 chr12 39312355 39312427 -104970062 + MIR3 SINE MIR 102 170 -38 1190 168 47 33 chr12 39313697 39313971 -104968518 + L1MB3 LINE L1 5904 6181 -2 411 275 8 8 chr12 39313980 39314111 -104968378 + L1ME3A LINE L1 5821 5951 -219 634 277 146 29 chr12 39314303 39314783 -104967706 + L1ME LINE L1 511 1046 -5024 303 258 55 115 chr12 39314784 39314966 -104967523 + HAL1 LINE L1 1236 1406 -1101 3116 230 51 92 chr12 39315381 39316199 -104966290 - LTR1 LTR ERV1 0 785 1 207 300 0 0 chr12 39316737 39316797 -104965692 + G-rich Low_complexity Low_complexity 1 60 0 464 214 11 0 chr12 39317769 39317858 -104964631 + MER33 DNA MER1_type 9 98 -226 309 51 0 0 chr12 39317879 39317918 -104964571 + (TG)n Simple_repeat Simple_repeat 2 40 0 626 193 104 83 chr12 39318491 39318683 -104963806 - MLT1A1 LTR MaLR -169 196 1 827 261 113 43 chr12 39319098 39319380 -104963109 - L1ME LINE L1 -393 5771 5510 2443 108 3 43 chr12 39319380 39319750 -104962739 + THE1A LTR MaLR 1 355 0 11092 120 2 1 chr12 39319750 39321328 -104961161 + THE1A-int LTR MaLR 1 1580 0 2182 139 11 22 chr12 39321328 39321687 -104960802 + THE1A LTR MaLR 1 355 0 827 261 113 43 chr12 39321687 39321971 -104960518 - L1ME LINE L1 -654 5510 5247 1409 147 105 18 chr12 39321971 39322257 -104960232 - AluSx SINE Alu -1 311 1 827 261 113 43 chr12 39322257 39322742 -104959747 - L1ME LINE L1 -917 5247 4647 198 0 0 0 chr12 39322748 39322770 -104959719 + (GA)n Simple_repeat Simple_repeat 2 23 0 1346 189 0 42 chr12 39322770 39323056 -104959433 - AluJo SINE Alu -38 274 1 21 36 0 0 chr12 39323821 39323849 -104958640 + AT_rich Low_complexity Low_complexity 1 28 0 2011 142 0 0 chr12 39324025 39324328 -104958161 - AluSq SINE Alu -10 303 1 327 287 30 10 chr12 39324381 39324482 -104958007 - HAL1b LINE L1 -10 1338 1236 1752 147 3 3 chr12 39324574 39324860 -104957629 - AluSq SINE Alu -25 288 3 184 120 260 0 chr12 39324981 39325031 -104957458 + MIR3 SINE MIR 129 191 -17 806 189 0 0 chr12 39325083 39325215 -104957274 - FLAM_C SINE Alu -1 132 1 1353 204 32 3 chr12 39325670 39325793 -104956696 + AluJb SINE Alu 1 119 -193 294 29 0 0 chr12 39325793 39325828 -104956661 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1353 204 32 3 chr12 39325828 39325989 -104956500 + AluJb SINE Alu 119 293 -19 322 122 354 37 chr12 39325992 39326074 -104956415 + Tigger1 DNA MER2_type 1066 1173 -1245 587 117 0 10 chr12 39326074 39326177 -104956312 + L1P LINE L1 3856 3957 -2189 740 269 72 15 chr12 39326350 39326684 -104955805 - L1M4 LINE L1 -1147 4999 4647 1094 74 0 9 chr12 39326695 39326926 -104955563 + (TA)n Simple_repeat Simple_repeat 1 228 0 1410 192 0 34 chr12 39326936 39327228 -104955261 - AluJo SINE Alu -30 282 1 2047 110 0 0 chr12 39328194 39328496 -104953993 - AluSq SINE Alu 0 302 1 310 301 18 26 chr12 39328536 39328649 -104953840 - HAL1b LINE L1 -1 1347 1236 1773 164 0 3 chr12 39328741 39329028 -104953461 - AluSq SINE Alu -25 288 3 210 136 212 30 chr12 39329149 39329215 -104953274 + MIR3 SINE MIR 129 206 -2 728 199 0 8 chr12 39329259 39329390 -104953099 - FLAM_C SINE Alu -3 130 1 1527 177 3 36 chr12 39329849 39330154 -104952335 + AluJb SINE Alu 1 295 -17 582 111 248 26 chr12 39330156 39330273 -104952216 + Tigger1 DNA MER2_type 1066 1208 -1210 * 5219 141 0 45 chr12 39330261 39330501 -104951988 + Tigger1 DNA MER2_type 1545 1794 -624 1975 128 3 0 chr12 39330501 39330789 -104951700 - AluSp SINE Alu -24 289 1 5219 141 0 45 chr12 39330789 39331324 -104951165 + Tigger1 DNA MER2_type 1794 2275 -143 1692 136 66 0 chr12 39331324 39331596 -104950893 - AluSx SINE Alu -21 291 2 5219 141 0 45 chr12 39331596 39331734 -104950755 + Tigger1 DNA MER2_type 2275 2418 0 391 277 17 8 chr12 39331734 39331852 -104950637 - LTR16C LTR ERVL -14 477 359 903 292 117 29 chr12 39332220 39332707 -104949782 + MER115 DNA AcHobo 15 643 -50 1647 136 3 17 chr12 39333113 39333400 -104949089 - L1MA4 LINE L1 0 6300 6018 420 218 73 150 chr12 39333685 39333919 -104948570 - MIR SINE MIR 0 262 47 1819 122 0 42 chr12 39334027 39334338 -104948151 + AluSx SINE Alu 7 305 0 314 320 50 0 chr12 39334432 39334532 -104947957 - L2 LINE L2 -15 3298 3194 454 325 62 21 chr12 39335086 39335280 -104947209 - MIR SINE MIR -12 250 49 2194 60 4 0 chr12 39335291 39335572 -104946917 + L1PA3 LINE L1 5874 6155 0 311 283 41 14 chr12 39336019 39336164 -104946325 + L1M4 LINE L1 3717 3865 -2281 581 111 0 11 chr12 39336260 39336350 -104946139 - L1PA16 LINE L1 -9 6157 6069 681 193 9 0 chr12 39336588 39336702 -104945787 + FLAM_A SINE Alu 1 115 -18 1755 144 3 0 chr12 39337122 39337464 -104945025 - AluSq SINE Alu 0 343 1 2012 114 3 0 chr12 39337466 39337756 -104944733 - AluSx SINE Alu -21 291 1 1108 128 0 6 chr12 39337759 39337938 -104944551 - AluSq SINE Alu -5 308 131 23 0 0 0 chr12 39337940 39337963 -104944526 + AT_rich Low_complexity Low_complexity 1 23 0 497 148 0 0 chr12 39338182 39338263 -104944226 + AluY SINE Alu 217 297 -14 1810 158 3 0 chr12 39338554 39338857 -104943632 + AluSx SINE Alu 1 304 -8 389 136 0 12 chr12 39339128 39339145 -104943344 + (GAAA)n Simple_repeat Simple_repeat 3 19 -63 1957 155 7 0 chr12 39339145 39339455 -104943034 + AluSx SINE Alu 1 312 0 389 136 0 12 chr12 39339455 39339518 -104942971 + (GAAA)n Simple_repeat Simple_repeat 19 82 0 1651 179 10 13 chr12 39340323 39340630 -104941859 - AluJb SINE Alu -6 306 1 1956 113 10 14 chr12 39340698 39341010 -104941479 + AluSp SINE Alu 1 311 0 1802 168 0 26 chr12 39341085 39341395 -104941094 + AluJb SINE Alu 1 302 -10 2005 128 0 0 chr12 39341395 39341691 -104940798 + AluSc SINE Alu 1 296 -13 1601 150 30 4 chr12 39341691 39341958 -104940531 - MER54A LTR ERVL -627 274 1 1518 143 140 0 chr12 39342135 39342400 -104940089 - AluSx SINE Alu 0 302 1 2003 127 3 0 chr12 39343000 39343299 -104939190 - AluSp SINE Alu -13 300 1 875 198 5 27 chr12 39343304 39343491 -104938998 - AluSg/x SINE Alu -17 293 111 1222 160 0 0 chr12 39343594 39343813 -104938676 + AluSg/x SINE Alu 94 312 0 2000 139 3 0 chr12 39343813 39344122 -104938367 + AluSp SINE Alu 1 310 -3 718 224 12 48 chr12 39344125 39344290 -104938199 + AluJo/FRAM SINE Alu 137 295 -7 711 192 0 0 chr12 39344501 39344621 -104937868 + FLAM_C SINE Alu 2 121 -22 717 19 29 10 chr12 39344621 39344724 -104937765 + (TAAAA)n Simple_repeat Simple_repeat 2 106 0 369 157 0 57 chr12 39344747 39344817 -104937672 + AluJ/FRAM SINE Alu 225 290 -12 1247 193 4 0 chr12 39345277 39345521 -104936968 + AluJb SINE Alu 1 245 -67 1761 140 7 7 chr12 39345521 39345822 -104936667 + AluSx SINE Alu 34 334 0 1181 212 26 29 chr12 39345838 39346145 -104936344 + AluJo SINE Alu 6 311 -1 3779 188 64 28 chr12 39346201 39346934 -104935555 - MER21B LTR ERV1 -1 862 94 2175 89 16 32 chr12 39346934 39347249 -104935240 + AluSx SINE Alu 3 312 0 3779 188 64 28 chr12 39347249 39347347 -104935142 - MER21B LTR ERV1 -769 94 1 1832 162 20 45 chr12 39347648 39348044 -104934445 - LTR25 LTR ERV1 -47 747 362 695 158 9 0 chr12 39348044 39348158 -104934331 + LTR46 LTR ERV1 1 115 -345 604 299 53 10 chr12 39348285 39348492 -104933997 - MIR SINE MIR -15 247 32 183 189 27 0 chr12 39348968 39349005 -104933484 + MIR SINE MIR 108 145 -63 370 299 19 0 chr12 39350049 39350156 -104932333 - L2 LINE L2 -18 3254 3146 2122 130 0 0 chr12 39350850 39351157 -104931332 - AluSg SINE Alu -3 307 1 290 297 42 8 chr12 39351493 39351611 -104930878 - MER94 DNA DNA -2 132 11 1826 224 82 10 chr12 39351709 39352195 -104930294 - MER90 LTR ERV1 0 614 94 554 241 133 20 chr12 39352966 39353169 -104929320 + MIR SINE MIR 30 255 -7 187 238 143 0 chr12 39353599 39353641 -104928848 - MIR SINE MIR -144 64 17 383 214 48 68 chr12 39353698 39353801 -104928688 - MIR SINE MIR -70 192 92 312 70 0 0 chr12 39354322 39354365 -104928124 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1703 136 0 25 chr12 39354392 39354678 -104927811 - AluSq SINE Alu -24 289 11 1914 108 20 10 chr12 39354792 39355089 -104927400 - AluSq SINE Alu -13 300 1 877 128 14 0 chr12 39355090 39355231 -104927258 - AluY SINE Alu -168 143 1 1312 169 120 33 chr12 39356251 39356552 -104925937 - SST1 Satellite centromeric 0 1563 1237 808 161 13 7 chr12 39356557 39356712 -104925777 + AluSg/x SINE Alu 157 312 0 7530 153 20 26 chr12 39356804 39358206 -104924283 - SST1 Satellite centromeric -170 1393 1 2190 270 63 44 chr12 39358900 39359717 -104922772 - SST1 Satellite centromeric -474 1089 246 243 61 0 0 chr12 39359717 39359750 -104922739 + (CCCCAG)n Simple_repeat Simple_repeat 1 33 0 2190 270 63 44 chr12 39359750 39360001 -104922488 - SST1 Satellite centromeric -1317 246 1 363 98 0 0 chr12 39360793 39360854 -104921635 + (CA)n Simple_repeat Simple_repeat 2 62 0 2224 272 45 51 chr12 39360875 39362121 -104920368 - SST1 Satellite centromeric -11 1552 315 16016 89 8 17 chr12 39362268 39365818 -104916671 - L1P LINE L1 -1546 4600 1072 826 241 229 4 chr12 39365921 39366187 -104916302 - MER93a LTR ERV1 -73 329 4 2459 182 43 63 chr12 39366661 39367150 -104915339 + L1MB4 LINE L1 5099 5596 -584 1453 166 0 0 chr12 39367150 39367379 -104915110 + AluSg SINE Alu 1 229 -81 2459 182 43 63 chr12 39367379 39367402 -104915087 + L1MB4 LINE L1 5596 5618 -562 312 27 0 0 chr12 39367402 39367439 -104915050 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2459 182 43 63 chr12 39367439 39367665 -104914824 + L1MB4 LINE L1 5618 5831 -349 22 35 0 0 chr12 39367739 39367768 -104914721 + AT_rich Low_complexity Low_complexity 1 29 0 8087 112 5 18 chr12 39368760 39370048 -104912441 + L1PA8 LINE L1 4047 5343 -829 2092 108 7 17 chr12 39370048 39370345 -104912144 + AluSq SINE Alu 1 294 -19 8087 112 5 18 chr12 39370345 39371165 -104911324 + L1PA8 LINE L1 5343 6172 0 2002 150 11 11 chr12 39372162 39372509 -104909980 + MER7A DNA MER2_type 1 345 -1 235 331 7 47 chr12 39372881 39373029 -104909460 + L2 LINE L2 3117 3258 -55 1383 219 0 34 chr12 39373588 39373885 -104908604 + AluJo SINE Alu 3 289 -23 27 29 0 0 chr12 39374160 39374194 -104908295 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 39374398 39374447 -104908042 + AT_rich Low_complexity Low_complexity 1 49 0 1366 197 51 67 chr12 39377356 39377640 -104904849 - MLT1A1 LTR MaLR 0 365 86 2140 118 0 0 chr12 39377640 39377970 -104904519 - AluSg SINE Alu 0 330 1 1366 197 51 67 chr12 39377970 39378055 -104904434 - MLT1A1 LTR MaLR -279 86 1 1229 204 0 17 chr12 39379107 39379347 -104903142 + AluJo SINE Alu 1 236 -76 3503 199 111 81 chr12 39379356 39380494 -104901995 + MER52A LTR ERV1 25 1196 -559 300 250 28 0 chr12 39380484 39380556 -104901933 + MER52A LTR ERV1 1682 1755 0 * 408 121 0 30 chr12 39380556 39380622 -104901867 + AluJo SINE Alu 235 298 -14 1178 245 49 12 chr12 39381185 39381511 -104900978 - MLT1A1 LTR MaLR -2 363 26 1080 334 66 19 chr12 39383047 39383654 -104898835 + L2 LINE L2 2574 3223 -90 1636 216 22 0 chr12 39383662 39384028 -104898461 - L1MB1 LINE L1 -13 5979 5606 403 117 10 39 chr12 39384028 39384131 -104898358 + (TA)n Simple_repeat Simple_repeat 1 100 0 9023 206 51 27 chr12 39384131 39385121 -104897368 - L1MB1 LINE L1 -375 5617 4652 1877 128 0 4 chr12 39385121 39385395 -104897094 - AluSx SINE Alu -7 305 33 9023 206 51 27 chr12 39385395 39387418 -104895071 - L1MB1 LINE L1 -1340 4652 2531 645 316 12 8 chr12 39387433 39387677 -104894812 - L1MB1 LINE L1 -4991 910 666 422 352 37 68 chr12 39387847 39388232 -104894257 - L1MB1 LINE L1 -5278 613 203 546 324 55 42 chr12 39388332 39388644 -104893845 - L1MB1 LINE L1 -5571 320 5 35 41 0 0 chr12 39388729 39388778 -104893711 + AT_rich Low_complexity Low_complexity 1 49 0 535 222 61 51 chr12 39388809 39389074 -104893415 + L1MC5 LINE L1 6991 7250 -733 1908 147 0 10 chr12 39389598 39389897 -104892592 - AluSx SINE Alu -16 296 1 2148 85 3 33 chr12 39390158 39390465 -104892024 + AluY SINE Alu 1 298 -13 1850 132 51 43 chr12 39391643 39392015 -104890474 - THE1C LTR MaLR 0 375 1 242 239 61 117 chr12 39393153 39393316 -104889173 + MER20B DNA MER1_type 20 173 -610 1915 142 0 30 chr12 39393468 39393803 -104888686 - AluSx SINE Alu 0 326 1 832 314 144 15 chr12 39394530 39395651 -104886838 + HAL1 LINE L1 133 1108 -1399 372 22 0 0 chr12 39395651 39395696 -104886793 + (CA)n Simple_repeat Simple_repeat 2 46 0 832 314 144 15 chr12 39395696 39396304 -104886185 + HAL1 LINE L1 1108 2143 -364 1261 199 0 13 chr12 39396309 39396535 -104885954 - MER41D LTR ERV1 0 557 335 21 57 0 0 chr12 39397153 39397188 -104885301 + AT_rich Low_complexity Low_complexity 1 35 0 2908 161 91 24 chr12 39397829 39398593 -104883896 - MER21A LTR ERV1 0 931 1 536 28 0 0 chr12 39399843 39399915 -104882574 - L1PA3 LINE L1 -98 6057 5986 725 12 0 0 chr12 39399917 39400022 -104882467 + L1PA3 LINE L1 6063 6167 0 225 278 37 0 chr12 39400145 39400199 -104882290 - L2 LINE L2 0 3313 3258 192 97 0 0 chr12 39400679 39400710 -104881779 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1267 211 45 23 chr12 39402074 39402382 -104880107 + MLT1A2 LTR MaLR 60 374 0 409 321 108 11 chr12 39402542 39402819 -104879670 + L1ME4a LINE L1 5644 5947 -174 421 185 12 0 chr12 39402985 39403066 -104879423 - MER94 DNA DNA -49 85 4 378 0 0 0 chr12 39403436 39403478 -104879011 + (TA)n Simple_repeat Simple_repeat 2 43 0 25 31 0 0 chr12 39403495 39403527 -104878962 + AT_rich Low_complexity Low_complexity 1 32 0 1862 61 16 4 chr12 39404172 39404417 -104878072 - AluY SINE Alu 0 311 64 291 290 95 95 chr12 39406175 39406396 -104876093 + MIR SINE MIR 30 250 -12 278 190 103 52 chr12 39406468 39406584 -104875905 - HAL1b LINE L1 -2 1346 1225 255 125 182 45 chr12 39406556 39406644 -104875845 + L1ME4a LINE L1 5981 6080 -41 * 306 224 65 37 chr12 39406739 39406846 -104875643 - HAL1b LINE L1 -145 1203 1094 22 0 0 0 chr12 39406879 39406901 -104875588 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr12 39406918 39406950 -104875539 + AT_rich Low_complexity Low_complexity 1 32 0 1258 224 123 35 chr12 39407172 39407276 -104875213 + MLT1D LTR MaLR 1 94 -411 2120 114 0 16 chr12 39407276 39407593 -104874896 + AluSx SINE Alu 1 312 0 1258 224 123 35 chr12 39407593 39407952 -104874537 + MLT1D LTR MaLR 94 505 0 394 212 0 12 chr12 39407974 39408059 -104874430 - L1ME3A LINE L1 -293 5877 5794 230 259 0 0 chr12 39408089 39408143 -104874346 - L1ME3A LINE L1 -453 5717 5664 564 297 6 0 chr12 39408148 39408313 -104874176 - L1ME3A LINE L1 -604 5566 5401 292 294 0 0 chr12 39408324 39408392 -104874097 + MER96B DNA MER1_type? 1 68 -107 312 266 75 45 chr12 39408450 39408649 -104873840 - L1ME3A LINE L1 -1810 4336 4132 220 259 0 0 chr12 39408742 39408796 -104873693 + CT-rich Low_complexity Low_complexity 1 54 0 213 94 0 0 chr12 39408797 39408829 -104873660 + (TG)n Simple_repeat Simple_repeat 2 33 0 343 204 45 34 chr12 39408848 39408936 -104873553 + Tigger5 DNA MER2_type 1 89 -2234 * 1474 147 4 0 chr12 39408932 39409170 -104873319 + Tigger5 DNA MER2_type 2085 2323 0 1561 153 65 57 chr12 39409254 39409449 -104873040 - THE1C LTR MaLR 0 375 174 1854 149 14 7 chr12 39409449 39409737 -104872752 - AluSx SINE Alu -16 296 7 1561 153 65 57 chr12 39409737 39409913 -104872576 - THE1C LTR MaLR -201 174 1 22 35 0 0 chr12 39411365 39411394 -104871095 + AT_rich Low_complexity Low_complexity 1 29 0 1111 200 20 43 chr12 39411654 39411909 -104870580 - MER96B DNA MER1_type? -168 249 1 383 340 160 0 chr12 39412154 39412348 -104870141 + MIR SINE MIR 25 249 -13 1250 166 125 35 chr12 39413914 39414258 -104868231 + THE1C LTR MaLR 1 375 0 1866 254 40 49 chr12 39414389 39415020 -104867469 - MLT1E2 LTR MaLR -1 625 1 729 229 98 29 chr12 39415260 39415635 -104866854 - L1ME2 LINE L1 -1 6163 5710 11806 45 6 4 chr12 39415753 39417951 -104864538 - L1PA5 LINE L1 -20 6134 3928 462 313 29 19 chr12 39418678 39418994 -104863495 - L1MEc LINE L1 -4612 1784 1466 437 328 89 53 chr12 39419035 39419980 -104862509 - L1MEc LINE L1 -5382 1014 36 225 0 0 0 chr12 39420104 39420129 -104862360 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 299 337 53 37 chr12 39420501 39420691 -104861798 - MIR SINE MIR -67 195 3 515 335 100 25 chr12 39420780 39421180 -104861309 - L3 LINE CR1 -1 1576 1147 22 35 0 0 chr12 39423025 39423054 -104859435 + AT_rich Low_complexity Low_complexity 1 29 0 614 301 39 27 chr12 39423640 39424068 -104858421 + LTR33 LTR ERVL 1 464 -57 818 134 7 35 chr12 39424094 39424236 -104858253 - FLAM_C SINE Alu 0 143 6 470 334 43 11 chr12 39424298 39424894 -104857595 + ERVL LTR ERVL 2882 3593 -2171 1819 327 25 12 chr12 39424928 39425677 -104856812 + ERVL LTR ERVL 3995 4763 -891 436 322 101 35 chr12 39426450 39426848 -104855641 + LTR33 LTR ERVL 31 454 -67 365 268 85 64 chr12 39426914 39427149 -104855340 + L1M4 LINE L1 2215 2454 -3692 305 382 0 0 chr12 39427314 39427445 -104855044 + L1M4 LINE L1 2691 2821 -3325 21 36 0 0 chr12 39427485 39427513 -104854976 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 39427578 39427600 -104854889 + AT_rich Low_complexity Low_complexity 1 22 0 1474 299 90 18 chr12 39428565 39429446 -104853043 - L1ME3A LINE L1 -4 6166 5225 853 296 94 16 chr12 39429706 39430454 -104852035 - L1ME3A LINE L1 -1329 4817 4012 386 212 64 91 chr12 39430642 39430811 -104851678 - L1MC4 LINE L1 -27 8015 7854 2054 137 76 17 chr12 39430811 39431155 -104851334 + THE1B LTR MaLR 1 364 0 386 212 64 91 chr12 39431155 39431249 -104851240 - L1MC4 LINE L1 -188 7854 7759 300 298 48 52 chr12 39431244 39431765 -104850724 - L1ME3A LINE L1 -2299 3847 3329 * 231 254 0 0 chr12 39431774 39431833 -104850656 - L1ME1 LINE L1 -7 6159 6101 2476 241 83 19 chr12 39431833 39432627 -104849862 - L1ME1 LINE L1 -6 6160 5316 25 31 0 0 chr12 39432627 39432659 -104849830 + AT_rich Low_complexity Low_complexity 1 32 0 215 268 87 47 chr12 39433958 39434085 -104848404 - MIR SINE MIR -54 208 77 704 335 122 17 chr12 39434248 39434744 -104847745 + L2 LINE L2 2544 3107 -206 422 293 64 0 chr12 39435136 39435276 -104847213 + LTR16C LTR ERVL 234 382 -109 336 317 101 25 chr12 39435523 39435722 -104846767 + LTR33 LTR ERVL 307 520 -1 234 0 0 0 chr12 39436094 39436120 -104846369 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1120 238 22 12 chr12 39436126 39436442 -104846047 - L1ME2 LINE L1 -45 6117 5802 1061 102 0 19 chr12 39436442 39436599 -104845890 - MER4E LTR ERV1 0 766 613 2677 140 14 2 chr12 39436599 39437028 -104845461 + MER57B LTR ERV1 1 434 0 2937 168 11 58 chr12 39437028 39437335 -104845154 + MER57B-int LTR ERV1 1 270 -7267 2014 145 0 0 chr12 39437335 39437632 -104844857 - AluSx SINE Alu -12 300 4 2937 168 11 58 chr12 39437632 39437890 -104844599 + MER57B-int LTR ERV1 270 539 -6998 30 27 0 0 chr12 39437890 39437927 -104844562 + AT_rich Low_complexity Low_complexity 1 37 0 2039 126 0 0 chr12 39437927 39438212 -104844277 - AluY SINE Alu -26 285 1 2064 141 0 0 chr12 39438808 39439106 -104843383 + AluSq SINE Alu 1 298 -15 2060 111 4 0 chr12 39439122 39439424 -104843065 + AluSp SINE Alu 4 306 0 183 80 0 0 chr12 39439444 39439469 -104843020 + (TG)n Simple_repeat Simple_repeat 2 26 0 232 133 0 80 chr12 39439471 39439546 -104842943 + LTR66 LTR ERVL 394 462 -148 1086 184 5 0 chr12 39439557 39439753 -104842736 - L1M2 LINE L1 -549 5742 5546 1376 87 5 11 chr12 39439767 39439951 -104842538 - AluY SINE Alu -16 295 113 1110 168 0 6 chr12 39440117 39440296 -104842193 - AluSg/x SINE Alu -13 299 122 2121 127 7 3 chr12 39440409 39440717 -104841772 + AluSq SINE Alu 1 309 -4 401 315 108 30 chr12 39440848 39441206 -104841283 + L1ME3A LINE L1 5421 5750 -420 1848 161 3 0 chr12 39441206 39441510 -104840979 - AluSx SINE Alu -7 305 1 2019 125 3 35 chr12 39441510 39441678 -104840811 - AluSx SINE Alu -11 301 146 1983 122 24 0 chr12 39441678 39441965 -104840524 - AluY SINE Alu -9 302 9 2019 125 3 35 chr12 39441965 39442107 -104840382 - AluSx SINE Alu -166 146 1 401 315 108 30 chr12 39442107 39442239 -104840250 + L1ME3A LINE L1 5749 5950 -220 1663 115 4 28 chr12 39442283 39442535 -104839954 + AluSg/x SINE Alu 65 310 -2 316 109 0 22 chr12 39442890 39442936 -104839553 + Alu SINE Alu 2 46 -257 742 257 74 19 chr12 39442955 39443278 -104839211 + L1MA9 LINE L1 5934 6274 -38 1714 155 35 18 chr12 39443304 39443588 -104838901 + AluSg SINE Alu 1 289 -21 315 0 0 0 chr12 39443607 39443642 -104838847 + (GA)n Simple_repeat Simple_repeat 2 36 0 277 342 71 19 chr12 39444280 39444435 -104838054 + MIR SINE MIR 12 174 -88 4709 178 30 12 chr12 39444955 39445919 -104836570 + L1MC2 LINE L1 5361 6341 -3 1995 149 0 0 chr12 39445933 39446222 -104836267 - AluY SINE Alu -20 291 3 930 204 0 0 chr12 39446227 39446384 -104836105 - AluJb SINE Alu -19 293 137 978 206 9 6 chr12 39446427 39449142 -104833347 - ALR/Alpha Satellite centromeric 0 3412 708 221 0 35 0 chr12 39449142 39449171 -104833318 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1982 95 61 0 chr12 39449171 39449434 -104833055 - AluY SINE Alu -32 279 1 978 206 9 6 chr12 39449434 39449828 -104832661 - ALR/Alpha Satellite centromeric -2703 709 1 918 196 11 6 chr12 39449841 39451975 -104830514 - ALR/Alpha Satellite centromeric -4 2143 1 207 0 0 0 chr12 39451981 39452004 -104830485 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 952 200 7 12 chr12 39452005 39456442 -104826047 - ALR/Alpha Satellite centromeric 0 4415 1 546 284 78 55 chr12 39456609 39457081 -104825408 + SST1 Satellite centromeric 190 672 -891 328 284 65 19 chr12 39457321 39457476 -104825013 + SST1 Satellite centromeric 1391 1552 -11 219 88 0 0 chr12 39457522 39457556 -104824933 + (TG)n Simple_repeat Simple_repeat 1 34 0 604 314 60 52 chr12 39458559 39459187 -104823302 + SST1 Satellite centromeric 40 672 -891 408 303 59 64 chr12 39459594 39460003 -104822486 + SST1 Satellite centromeric 1130 1536 -27 353 165 10 0 chr12 39460008 39460105 -104822384 + (TG)n Simple_repeat Simple_repeat 1 98 0 1024 199 8 6 chr12 39460749 39464624 -104817865 - ALR/Alpha Satellite centromeric -8 3880 1 3062 271 60 46 chr12 39464915 39465171 -104817318 + SST1 Satellite centromeric 1 252 -1311 279 93 0 0 chr12 39465171 39465214 -104817275 + (CTGGGG)n Simple_repeat Simple_repeat 3 45 0 3062 271 60 46 chr12 39465214 39466498 -104815991 + SST1 Satellite centromeric 252 1562 -1 225 0 0 0 chr12 39466502 39466527 -104815962 + (TG)n Simple_repeat Simple_repeat 2 26 0 249 210 16 0 chr12 39466527 39466589 -104815900 + CT-rich Low_complexity Low_complexity 1 63 0 577 257 58 18 chr12 39467318 39467544 -104814945 + SST1 Satellite centromeric 1 235 -1328 2134 265 60 52 chr12 39467556 39468688 -104813801 + SST1 Satellite centromeric 416 1556 -7 249 33 0 0 chr12 39468703 39468733 -104813756 + (TG)n Simple_repeat Simple_repeat 2 31 0 245 196 18 0 chr12 39468733 39468789 -104813700 + CT-rich Low_complexity Low_complexity 1 57 0 262 78 20 20 chr12 39468793 39468844 -104813645 + (TG)n Simple_repeat Simple_repeat 2 52 0 536 272 75 24 chr12 39469549 39469762 -104812727 + SST1 Satellite centromeric 9 232 -1331 1470 289 58 50 chr12 39469773 39470593 -104811896 + SST1 Satellite centromeric 413 1239 -324 7524 157 29 19 chr12 39471157 39472550 -104809939 + SST1 Satellite centromeric 1 1406 -157 813 154 0 13 chr12 39472623 39472772 -104809717 - AluSg/x SINE Alu -9 303 157 1261 191 127 11 chr12 39472778 39473061 -104809428 + SST1 Satellite centromeric 1238 1553 -10 803 164 7 0 chr12 39474128 39474268 -104808221 + AluYb8 SINE Alu 1 141 -177 2071 122 10 3 chr12 39474271 39474582 -104807907 + AluSq SINE Alu 1 313 0 1899 149 0 0 chr12 39474710 39474998 -104807491 + AluSx SINE Alu 11 298 -14 428 204 0 39 chr12 39475339 39475442 -104807047 + MER33 DNA MER1_type 37 135 -189 869 143 13 26 chr12 39475442 39475576 -104806913 + AluJo SINE Alu 1 134 -178 1801 142 0 52 chr12 39475576 39475885 -104806604 + AluJb SINE Alu 1 293 -19 869 143 13 26 chr12 39475885 39475904 -104806585 + AluJo SINE Alu 134 152 -160 1247 164 9 0 chr12 39475905 39476124 -104806365 + AluSg/x SINE Alu 79 299 -13 369 0 0 0 chr12 39476125 39476166 -104806323 + (CA)n Simple_repeat Simple_repeat 2 42 0 1435 186 59 10 chr12 39476254 39476561 -104805928 + L1MB8 LINE L1 5848 6169 -9 550 128 21 0 chr12 39476645 39476739 -104805750 - AluSx SINE Alu 0 312 217 822 162 7 7 chr12 39476739 39476881 -104805608 - AluSx SINE Alu -170 142 1 1138 208 4 38 chr12 39477008 39477272 -104805217 + AluJb SINE Alu 1 255 -57 582 144 0 29 chr12 39479220 39479354 -104803135 + AluSg/x SINE Alu 206 312 0 1715 132 32 7 chr12 39479459 39479740 -104802749 + AluSx SINE Alu 5 292 -20 657 170 38 0 chr12 39479769 39479875 -104802614 - AluSq/x SINE Alu -201 111 2 258 187 98 49 chr12 39480004 39480127 -104802362 - HAL1b LINE L1 -5 1343 1215 1624 179 10 17 chr12 39480183 39480459 -104802030 + AluSx SINE Alu 4 112 -200 198 0 0 0 chr12 39480459 39480481 -104802008 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1624 179 10 17 chr12 39480481 39480681 -104801808 + AluSx SINE Alu 112 312 0 1384 194 61 4 chr12 39480681 39480959 -104801530 + MER44D DNA MER2_type 439 604 -1 239 244 39 0 chr12 39481239 39481317 -104801172 + (TA)n Simple_repeat Simple_repeat 2 82 0 1752 165 3 0 chr12 39481331 39481628 -104800861 - AluSx SINE Alu -14 298 1 1625 179 3 0 chr12 39481665 39481950 -104800539 + AluJb SINE Alu 5 290 -22 236 289 24 0 chr12 39481991 39482074 -104800415 - L1ME LINE L1 -545 5576 5492 2657 196 101 4 chr12 39482076 39482602 -104799887 + MER77 LTR ERV1 1 577 -28 2265 87 0 7 chr12 39482849 39483158 -104799331 - AluY SINE Alu -4 307 1 2070 123 0 0 chr12 39483306 39483606 -104798883 - AluSg SINE Alu -1 309 10 2399 141 21 14 chr12 39483686 39484104 -104798385 - L1PA15 LINE L1 0 6165 5745 2056 231 12 19 chr12 39484114 39484550 -104797939 + L1P LINE L1 4730 5163 -983 1737 119 19 0 chr12 39484550 39484811 -104797678 + AluSg SINE Alu 42 307 -3 2056 231 12 19 chr12 39484811 39484937 -104797552 + L1P LINE L1 5163 5288 -858 267 224 0 40 chr12 39484941 39485017 -104797472 + MER89 LTR ERV1 487 559 0 1740 155 7 7 chr12 39485072 39485356 -104797133 + AluSg SINE Alu 3 286 -24 1988 130 0 3 chr12 39485364 39485663 -104796826 + AluSg SINE Alu 1 298 -12 1196 106 5 88 chr12 39485665 39485908 -104796581 + AluSp SINE Alu 98 313 0 1679 142 64 0 chr12 39486246 39486527 -104795962 + AluSq SINE Alu 1 299 -14 1042 201 20 111 chr12 39486527 39486745 -104795744 - L1MC4a LINE L1 -916 6892 6752 712 157 0 57 chr12 39486745 39486885 -104795604 + FLAM_C SINE Alu 1 132 -1 1042 201 20 111 chr12 39486885 39487027 -104795462 - L1MC4a LINE L1 -1056 6752 6599 1889 157 0 0 chr12 39487044 39487343 -104795146 - AluSx SINE Alu -13 299 1 1722 185 145 46 chr12 39487343 39487445 -104795044 + MER106B DNA MER1_type 2 92 -967 2052 130 0 0 chr12 39487445 39487745 -104794744 - AluSx SINE Alu -12 300 1 1722 185 145 46 chr12 39487745 39487842 -104794647 + MER106B DNA MER1_type 92 178 -881 1768 158 7 7 chr12 39487842 39488146 -104794343 + AluSx SINE Alu 1 304 -8 1722 185 145 46 chr12 39488146 39488427 -104794062 + MER106B DNA MER1_type 178 531 -528 1754 151 3 3 chr12 39488427 39488749 -104793740 - AluSx SINE Alu 0 322 1 1834 154 3 0 chr12 39488974 39489279 -104793210 + AluSx SINE Alu 2 307 -5 2168 113 3 0 chr12 39489332 39489642 -104792847 + AluSx SINE Alu 1 311 -1 287 105 0 0 chr12 39490025 39490063 -104792426 + Alu SINE Alu 1 38 -263 468 290 132 48 chr12 39490115 39490470 -104792019 + L2 LINE L2 2847 3231 -82 1260 87 17 0 chr12 39490472 39490644 -104791845 - AluSg/x SINE Alu -22 288 114 454 150 23 120 chr12 39491284 39491417 -104791072 + MER61E LTR ERV1 33 152 -417 * 672 168 48 8 chr12 39491401 39491514 -104790975 + LTR25 LTR ERV1 239 356 -438 845 155 216 28 chr12 39491514 39491838 -104790651 - LTR46 LTR ERV1 0 460 1 1832 162 20 45 chr12 39491838 39492234 -104790255 + LTR25 LTR ERV1 362 747 -47 3808 181 78 32 chr12 39492535 39492625 -104789864 + MER21B LTR ERV1 1 85 -778 2175 89 16 32 chr12 39492625 39492940 -104789549 - AluSx SINE Alu 0 312 3 3808 181 78 32 chr12 39492940 39493673 -104788816 + MER21B LTR ERV1 85 862 -1 1181 212 26 29 chr12 39493729 39494036 -104788453 - AluJo SINE Alu -1 311 6 1743 143 7 7 chr12 39494052 39494353 -104788136 - AluSx SINE Alu 0 334 34 248 211 0 0 chr12 39494353 39494405 -104788084 - AluJb SINE Alu -57 245 194 516 198 0 0 chr12 39494590 39494686 -104787803 - AluSx SINE Alu 0 312 217 836 169 0 0 chr12 39494686 39494828 -104787661 - AluSx SINE Alu -171 142 1 1507 185 7 7 chr12 39494953 39495245 -104787244 + AluJb SINE Alu 1 292 -20 324 0 0 0 chr12 39495584 39495620 -104786869 + (CA)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr12 39496100 39496121 -104786368 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 378 0 0 0 chr12 39497205 39497247 -104785242 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1758 144 7 0 chr12 39497248 39497526 -104784963 - AluSx SINE Alu -32 280 1 1631 179 11 0 chr12 39497616 39497895 -104784594 - AluSx SINE Alu -28 284 3 290 271 66 8 chr12 39498030 39498152 -104784337 - HAL1b LINE L1 -5 1343 1215 1663 173 3 22 chr12 39498205 39498523 -104783966 + AluSx SINE Alu 1 312 0 429 66 66 0 chr12 39498530 39498606 -104783883 + GA-rich Low_complexity Low_complexity 1 81 0 1633 184 13 22 chr12 39498607 39498922 -104783567 + MER44D DNA MER2_type 421 604 -1 1854 144 7 0 chr12 39499289 39499587 -104782902 - AluSx SINE Alu -12 300 1 1492 207 7 0 chr12 39499620 39499919 -104782570 + AluJb SINE Alu 1 301 -11 2427 211 113 4 chr12 39500031 39500551 -104781938 + MER77 LTR ERV1 1 577 -28 1822 149 0 0 chr12 39500928 39501210 -104781279 - AluSg SINE Alu 0 310 29 769 147 0 37 chr12 39501260 39501434 -104781055 + AluSp/q SINE Alu 172 313 0 1949 104 3 45 chr12 39501573 39501881 -104780608 - AluSx SINE Alu -17 295 1 1028 115 0 0 chr12 39501881 39502020 -104780469 - AluSq/x SINE Alu -172 141 3 532 236 42 21 chr12 39502041 39502185 -104780304 + L2 LINE L2 3167 3313 0 882 212 14 37 chr12 39502242 39502459 -104780030 - AluSx SINE Alu -100 212 1 23 0 0 0 chr12 39502713 39502736 -104779753 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr12 39502915 39502955 -104779534 + AT_rich Low_complexity Low_complexity 1 40 0 1219 222 60 4 chr12 39502955 39503260 -104779229 - L1MC/D LINE L1 -718 5626 5370 936 172 0 0 chr12 39503265 39503422 -104779067 + FRAM SINE Alu 1 157 -19 1934 128 0 0 chr12 39503425 39503745 -104778744 + AluY SINE Alu 1 320 0 3249 181 57 10 chr12 39503752 39504425 -104778064 - L1MC2 LINE L1 -25 6319 5616 235 180 197 0 chr12 39504686 39504747 -104777742 - AluSq SINE Alu -8 295 223 1242 137 6 0 chr12 39504748 39504930 -104777559 - AluSq SINE Alu -130 183 1 1433 133 4 29 chr12 39505289 39505529 -104776960 - AluSg/x SINE Alu -14 298 65 264 226 54 21 chr12 39505576 39505669 -104776820 - L1ME3A LINE L1 -223 5947 5852 1672 155 16 39 chr12 39505709 39505850 -104776639 + AluSx SINE Alu 1 144 -168 1708 161 7 0 chr12 39505850 39506136 -104776353 + AluY SINE Alu 8 295 -16 1672 155 16 39 chr12 39506136 39506303 -104776186 + AluSx SINE Alu 144 302 -10 1752 157 0 0 chr12 39506307 39506593 -104775896 + AluSx SINE Alu 3 288 -24 59 0 0 0 chr12 39506593 39506652 -104775837 + AT_rich Low_complexity Low_complexity 1 59 0 462 319 63 12 chr12 39506670 39507002 -104775487 - L1ME3A LINE L1 -401 5769 5421 2006 119 7 3 chr12 39507148 39507441 -104775048 - AluSq SINE Alu -15 298 5 1602 159 10 10 chr12 39508284 39508573 -104773916 - AluJb SINE Alu -23 289 1 589 152 0 11 chr12 39508686 39508778 -104773711 + AluSp SINE Alu 122 212 -101 1588 198 23 8 chr12 39509283 39509623 -104772866 + MER93a LTR ERV1 4 394 -8 754 187 0 43 chr12 39509625 39509764 -104772725 - FLAM_A SINE Alu 0 133 1 612 89 0 11 chr12 39510002 39510092 -104772397 + L1PA16 LINE L1 6069 6157 -9 317 280 24 8 chr12 39510188 39510313 -104772176 - L1M4 LINE L1 -2281 3865 3739 24 32 0 0 chr12 39510334 39510365 -104772124 + AT_rich Low_complexity Low_complexity 1 31 0 457 335 56 19 chr12 39510748 39510963 -104771526 + MIR SINE MIR 28 250 -12 345 297 50 0 chr12 39511512 39511613 -104770876 + L2 LINE L2 3193 3298 -15 1805 157 0 7 chr12 39511709 39512002 -104770487 - AluSx SINE Alu -15 297 7 414 230 132 113 chr12 39512108 39512312 -104770177 + MIR SINE MIR 44 251 -11 1648 125 14 7 chr12 39512635 39512916 -104769573 + L1MA4 LINE L1 6018 6300 0 1120 269 90 34 chr12 39513098 39513657 -104768832 - MER115 DNA AcHobo -50 643 15 419 281 15 15 chr12 39514004 39514139 -104768350 + LTR16C LTR ERVL 340 474 -17 2878 158 2 41 chr12 39514142 39514280 -104768209 - Tigger1 DNA MER2_type 0 2418 2276 1858 121 39 0 chr12 39514280 39514560 -104767929 + AluSx SINE Alu 2 292 -20 2878 158 2 41 chr12 39514560 39514969 -104767520 - Tigger1 DNA MER2_type -142 2276 1899 846 255 25 10 chr12 39515153 39515349 -104767140 - MER115 DNA AcHobo -50 643 445 2101 134 7 0 chr12 39515406 39515712 -104766777 + AluSp SINE Alu 1 308 -5 2269 139 0 0 chr12 39515712 39516064 -104766425 - Tigger1 DNA MER2_type -645 1773 1422 300 250 107 0 chr12 39518944 39519028 -104763461 + L1ME LINE L1 5737 5829 -333 209 262 24 60 chr12 39519339 39519423 -104763066 - MIR SINE MIR -58 150 70 276 286 174 0 chr12 39519619 39519717 -104762772 + L2 LINE L2 3122 3236 -36 367 283 145 0 chr12 39519728 39519873 -104762616 - L2 LINE L2 -9 3304 3139 607 282 42 8 chr12 39519957 39520198 -104762291 - L2 LINE L2 -1742 1572 1324 393 268 16 16 chr12 39520256 39520379 -104762110 + MIR SINE MIR 93 215 -47 968 310 141 2 chr12 39520395 39521020 -104761469 - L2 LINE L2 -1993 1321 610 2104 188 25 109 chr12 39521082 39521694 -104760795 - MER7C DNA MER2_type -42 560 1 356 278 164 27 chr12 39521697 39521960 -104760529 - L2 LINE L2 -2793 521 223 506 115 0 0 chr12 39522392 39522470 -104760019 - AluSc SINE Alu -11 298 221 453 270 8 8 chr12 39522954 39523080 -104759409 - L2 LINE L2 -55 3258 3133 721 180 8 0 chr12 39523080 39523208 -104759281 + FLAM_C SINE Alu 5 133 -10 248 294 124 79 chr12 39523384 39523561 -104758928 + MER5A DNA MER1_type 3 187 -2 334 273 27 18 chr12 39523637 39523747 -104758742 + L2 LINE L2 2927 3037 -235 285 246 31 19 chr12 39524113 39524232 -104758257 + MIR SINE MIR 33 152 -65 25 31 0 0 chr12 39525329 39525361 -104757128 + AT_rich Low_complexity Low_complexity 1 32 0 628 304 119 14 chr12 39575513 39576160 -104706329 + L1ME4a LINE L1 5269 6037 -84 555 284 43 26 chr12 39576199 39576431 -104706058 - MER106A DNA MER1_type 0 236 1 1120 147 6 0 chr12 39576493 39576656 -104705833 - AluSg/x SINE Alu -30 280 117 1217 147 7 1 chr12 39576792 39578186 -104704303 + ALR/Alpha Satellite centromeric 1 1401 -29 6731 45 29 0 chr12 39578186 39579388 -104703101 - L1PA3 LINE L1 0 6155 4935 10539 62 8 11 chr12 39579392 39580823 -104701666 - L1PA3 LINE L1 -1445 4701 3274 1302 149 4 2 chr12 39580925 39586164 -104696325 + ALR/Alpha Satellite centromeric 1 5253 -46 1089 168 3 2 chr12 39586266 39588419 -104694070 - ALR/Alpha Satellite centromeric 0 2153 1 1219 99 5 42 chr12 39588420 39588611 -104693878 + LTR5 LTR ERVK 1 184 -785 2683 125 3 0 chr12 39588621 39589013 -104693476 + LTR5 LTR ERVK 577 969 0 982 158 16 2 chr12 39589013 39589511 -104692978 - ALR/Alpha Satellite centromeric 0 504 1 1074 180 2 3 chr12 39589523 39591749 -104690740 - ALR/Alpha Satellite centromeric 0 2225 1 1143 173 5 4 chr12 39591761 39594823 -104687666 + ALR/Alpha Satellite centromeric 1 3063 -8 2245 83 0 0 chr12 39594926 39595204 -104687285 - AluY SINE Alu -29 282 5 1064 167 1 0 chr12 39595208 39595832 -104686657 + ALR/Alpha Satellite centromeric 1 624 -13 1201 153 3 2 chr12 39595844 39610611 -104671878 + ALR/Alpha Satellite centromeric 1 14786 0 1213 150 5 2 chr12 39610622 39624327 -104658162 + ALR/Alpha Satellite centromeric 1 13733 -20 1279 143 3 1 chr12 39624435 39647707 -104634782 + ALR/Alpha Satellite centromeric 1 23317 -27 40603 68 3 2 chr12 39647708 39653853 -104628636 - L1PA3 LINE L1 -3 6152 2 1176 159 4 0 chr12 39653853 39657628 -104624861 + ALR/Alpha Satellite centromeric 1 3786 -14 1185 155 5 2 chr12 39657642 39668715 -104613774 - ALR/Alpha Satellite centromeric 0 11107 1 37602 64 38 3 chr12 39668715 39673679 -104608810 + L1P LINE L1 1 5141 -1005 1191 164 4 1 chr12 39673785 39680779 -104601710 + ALR/Alpha Satellite centromeric 1 7013 0 1181 159 3 1 chr12 39680884 39690182 -104592307 - ALR/Alpha Satellite centromeric 0 9316 1 39564 63 37 2 chr12 39690182 39695400 -104587089 + L1P LINE L1 1 5397 -749 1279 151 2 2 chr12 39695515 39703075 -104579414 + ALR/Alpha Satellite centromeric 1 7687 -4849 985 56 0 0 chr12 39703075 39703200 -104579289 - L1PA3 LINE L1 -5 6150 6026 1279 151 2 2 chr12 39703200 39707986 -104574503 + ALR/Alpha Satellite centromeric 7687 12471 -65 15767 85 1 4 chr12 39707987 39710102 -104572387 + L1P LINE L1 1 2108 -4038 1255 162 3 2 chr12 39710206 39719629 -104562860 + ALR/Alpha Satellite centromeric 1 9415 -12270 2390 88 0 0 chr12 39719629 39719934 -104562555 - AluY SINE Alu -2 309 5 1255 162 3 2 chr12 39719934 39731864 -104550625 + ALR/Alpha Satellite centromeric 9415 21674 -11 1167 163 5 3 chr12 39731879 39745329 -104537160 + ALR/Alpha Satellite centromeric 1 13480 -48 1144 168 5 4 chr12 39745358 39749476 -104533013 + ALR/Alpha Satellite centromeric 1 4114 -4528 2706 23 7 0 chr12 39749476 39749785 -104532704 - AluYb8 SINE Alu -7 311 1 1144 168 5 4 chr12 39749785 39753982 -104528507 + ALR/Alpha Satellite centromeric 4114 8631 -11 1182 154 4 2 chr12 39753997 39762966 -104519523 + ALR/Alpha Satellite centromeric 1 8983 0 967 171 4 3 chr12 39762977 39764590 -104517899 + ALR/Alpha Satellite centromeric 1 1615 0 1201 169 4 2 chr12 39764700 39770613 -104511876 + ALR/Alpha Satellite centromeric 1 5927 -53 2451 58 3 3 chr12 39770754 39771079 -104511410 + L1PA3 LINE L1 3870 4194 -1952 7953 53 1 2 chr12 39771081 39772848 -104509641 + L1PA3 LINE L1 4386 6152 -3 1185 153 3 1 chr12 39772856 39781832 -104500657 - ALR/Alpha Satellite centromeric 0 8991 1 1702 189 0 29 chr12 39782009 39782315 -104500174 + AluJb SINE Alu 1 297 -15 2019 124 35 0 chr12 39782324 39782614 -104499875 + AluSc SINE Alu 1 300 -9 1485 152 45 8 chr12 39782614 39782878 -104499611 - MER54A LTR ERVL -627 274 1 1535 132 143 0 chr12 39783062 39783320 -104499169 - AluSx SINE Alu -7 295 1 2265 110 3 0 chr12 39783921 39784221 -104498268 - AluSp SINE Alu -12 301 1 825 196 7 0 chr12 39784235 39784383 -104498106 - AluSg/x SINE Alu -19 291 143 898 149 95 0 chr12 39784486 39784654 -104497835 + AluSg/x SINE Alu 127 310 0 2184 125 3 0 chr12 39784654 39784965 -104497524 + AluSq SINE Alu 1 312 -1 950 180 0 45 chr12 39784969 39785147 -104497342 + AluSg/x SINE Alu 129 298 -14 707 188 0 0 chr12 39785356 39785473 -104497016 + FLAM_C SINE Alu 1 117 -16 619 52 10 10 chr12 39785476 39785573 -104496916 + (TAAAA)n Simple_repeat Simple_repeat 2 98 0 435 157 0 0 chr12 39785597 39785667 -104496822 + AluJ/FRAM SINE Alu 223 292 -20 1354 193 4 0 chr12 39786117 39786361 -104496128 + AluJb SINE Alu 1 245 -67 1851 129 7 11 chr12 39786361 39786672 -104495817 + AluSq SINE Alu 34 313 0 1408 188 20 24 chr12 39786681 39786974 -104495515 + AluJo SINE Alu 6 297 -15 3912 170 79 32 chr12 39787042 39787778 -104494711 - MER21B LTR ERV1 0 863 82 2175 103 16 32 chr12 39787778 39788089 -104494400 + AluSx SINE Alu 3 308 -4 3912 170 79 32 chr12 39788089 39788176 -104494313 - MER21B LTR ERV1 -781 82 1 1755 156 20 48 chr12 39788484 39788881 -104493608 - LTR25 LTR ERV1 -47 747 362 745 168 81 32 chr12 39788881 39789210 -104493279 + LTR46 LTR ERV1 1 460 0 498 181 57 9 chr12 39789212 39789317 -104493172 - LTR25 LTR ERV1 -455 339 230 393 179 15 119 chr12 39789292 39789426 -104493063 - MER61E LTR ERV1 -417 152 33 * 1414 77 17 0 chr12 39790088 39790269 -104492220 + AluSg/x SINE Alu 114 297 -15 505 299 130 42 chr12 39790272 39790626 -104491863 - L2 LINE L2 -82 3231 2847 278 132 0 0 chr12 39790678 39790716 -104491773 - Alu SINE Alu -263 38 1 2286 107 10 0 chr12 39791091 39791400 -104491089 - AluSx SINE Alu 0 312 1 1815 170 3 0 chr12 39791450 39791750 -104490739 - AluSx SINE Alu -7 305 5 1279 138 3 1 chr12 39791878 39800509 -104481980 - ALR/Alpha Satellite centromeric 0 8643 1 400 322 93 58 chr12 39800987 39801933 -104480556 + L1MEc LINE L1 36 1014 -5382 522 312 27 15 chr12 39801960 39802290 -104480199 + L1MEc LINE L1 1451 1784 -4612 11808 43 2 11 chr12 39803023 39805240 -104477249 + L1PA5 LINE L1 3928 6134 -20 306 232 10 32 chr12 39805349 39805462 -104477027 + L1ME2 LINE L1 5701 5808 -356 697 225 92 38 chr12 39805479 39805741 -104476748 + L1ME2 LINE L1 5888 6163 -1 1937 241 43 51 chr12 39805981 39806611 -104475878 + MLT1E2 LTR MaLR 1 625 -1 1393 156 135 32 chr12 39806742 39807082 -104475407 - THE1C LTR MaLR 0 375 1 405 340 153 0 chr12 39808633 39808836 -104473653 - MIR SINE MIR -4 258 25 1006 220 20 43 chr12 39809081 39809336 -104473153 + MER96B DNA MER1_type? 1 249 -168 400 341 76 31 chr12 39810198 39810488 -104472001 + HAL1b LINE L1 631 933 -415 1709 154 48 50 chr12 39811075 39811256 -104471233 + THE1C LTR MaLR 1 181 -194 1841 150 7 24 chr12 39811256 39811550 -104470939 + AluSx SINE Alu 7 295 -17 1709 154 48 50 chr12 39811550 39811744 -104470745 + THE1C LTR MaLR 181 375 0 1635 155 140 3 chr12 39811830 39812152 -104470337 - MER47A DNA MER2_type 0 366 1 204 97 0 0 chr12 39812171 39812202 -104470287 + (CA)n Simple_repeat Simple_repeat 2 32 0 234 241 0 0 chr12 39812202 39812256 -104470233 + GA-rich Low_complexity Low_complexity 1 54 0 274 266 80 50 chr12 39812349 39812548 -104469941 + L1ME3A LINE L1 4132 4336 -1810 333 265 0 0 chr12 39812606 39812674 -104469815 - MER96B DNA MER1_type? -107 68 1 455 321 6 0 chr12 39812685 39812850 -104469639 + L1ME3A LINE L1 5401 5566 -604 240 259 0 0 chr12 39812855 39812909 -104469580 + L1ME3A LINE L1 5664 5717 -453 387 214 0 11 chr12 39812942 39813031 -104469458 + L1ME3A LINE L1 5797 5884 -286 1242 223 130 37 chr12 39813046 39813403 -104469086 - MLT1D LTR MaLR 0 505 94 2187 107 0 16 chr12 39813403 39813720 -104468769 - AluSx SINE Alu 0 312 1 1242 223 130 37 chr12 39813720 39813824 -104468665 - MLT1D LTR MaLR -411 94 1 22 94 0 0 chr12 39814011 39814075 -104468414 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr12 39814096 39814117 -104468372 + AT_rich Low_complexity Low_complexity 1 21 0 315 216 36 45 chr12 39814150 39814261 -104468228 + HAL1b LINE L1 1094 1203 -145 231 148 182 45 chr12 39814356 39814444 -104468045 - L1ME4a LINE L1 -41 6080 5981 * 279 186 106 53 chr12 39814419 39814532 -104467957 + HAL1b LINE L1 1228 1346 -2 272 294 95 95 chr12 39814604 39814825 -104467664 - MIR SINE MIR -12 250 30 1811 61 17 4 chr12 39816575 39816805 -104465684 + AluY SINE Alu 65 297 -14 202 182 36 0 chr12 39817458 39817513 -104464976 + (TA)n Simple_repeat Simple_repeat 1 57 0 405 198 12 0 chr12 39817890 39817971 -104464518 + MER94 DNA DNA 4 85 -49 415 314 93 11 chr12 39818139 39818419 -104464070 - L1ME4a LINE L1 -175 5946 5644 1254 218 45 23 chr12 39818579 39818887 -104463602 - MLT1A2 LTR MaLR 0 374 60 24 32 0 0 chr12 39820721 39820752 -104461737 + AT_rich Low_complexity Low_complexity 1 31 0 2970 158 84 24 chr12 39821510 39822280 -104460209 + MER21A LTR ERV1 1 931 0 21 57 0 0 chr12 39822922 39822957 -104459532 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 39823197 39823226 -104459263 + AT_rich Low_complexity Low_complexity 1 29 0 1301 196 13 4 chr12 39823589 39823824 -104458665 + MER41D LTR ERV1 320 556 -1 882 277 174 22 chr12 39823830 39824331 -104458158 - HAL1 LINE L1 -364 2143 1567 1310 323 131 16 chr12 39824365 39824434 -104458055 - HAL1 LINE L1 -1037 1470 1410 369 0 0 0 chr12 39824434 39824475 -104458014 + (TG)n Simple_repeat Simple_repeat 2 42 0 1310 323 131 16 chr12 39824475 39825608 -104456881 - HAL1 LINE L1 -1097 1410 129 1754 160 3 31 chr12 39826331 39826653 -104455836 + AluSx SINE Alu 1 314 0 1874 129 48 40 chr12 39828123 39828495 -104453994 + THE1C LTR MaLR 1 375 0 2039 99 3 26 chr12 39829664 39829967 -104452522 - AluY SINE Alu -15 296 1 2024 141 0 3 chr12 39830228 39830533 -104451956 + AluSx SINE Alu 1 304 -8 569 247 39 56 chr12 39831109 39831340 -104451149 - L1MC5 LINE L1 -763 7198 6972 507 336 55 42 chr12 39831487 39831799 -104450690 + L1M3 LINE L1 5 320 -5571 378 350 35 65 chr12 39831900 39832285 -104450204 + L1M3 LINE L1 203 613 -5278 664 317 8 8 chr12 39832457 39832700 -104449789 + L1M3 LINE L1 668 910 -4991 9340 207 40 31 chr12 39832715 39834784 -104447705 + L1M3 LINE L1 2531 4639 -1353 1670 144 0 4 chr12 39834784 39835215 -104447274 + AluSx SINE Alu 40 312 0 9340 207 40 31 chr12 39835215 39836197 -104446292 + L1M3 LINE L1 4639 5610 -382 303 259 47 0 chr12 39836202 39836287 -104446202 + L1MC4 LINE L1 6615 6703 -1339 281 148 49 37 chr12 39836288 39836369 -104446120 + (TATG)n Simple_repeat Simple_repeat 1 82 0 518 351 98 13 chr12 39836941 39837320 -104445169 - L3 LINE CR1 -17 1560 1150 21 0 0 0 chr12 39837597 39837618 -104444871 + AT_rich Low_complexity Low_complexity 1 21 0 610 321 38 19 chr12 39839790 39840202 -104442287 + LTR33 LTR ERVL 14 464 -57 778 127 15 37 chr12 39840240 39840374 -104442115 - FLAM_C SINE Alu -2 131 1 335 333 56 14 chr12 39840431 39840790 -104441699 + ERVL LTR ERVL 2882 3271 -2383 335 345 25 15 chr12 39840827 39841027 -104441462 + ERVL LTR ERVL 3352 3553 -2101 1836 331 22 10 chr12 39841063 39841810 -104440679 + ERVL LTR ERVL 3999 4763 -891 390 328 71 35 chr12 39842583 39842894 -104439595 + LTR33 LTR ERVL 31 352 -169 326 272 91 56 chr12 39843047 39843279 -104439210 + L1M3d LINE L1 2039 2278 -3692 24 32 0 0 chr12 39843615 39843646 -104438843 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr12 39843709 39843731 -104438758 + AT_rich Low_complexity Low_complexity 1 22 0 334 338 66 81 chr12 39844174 39844582 -104437907 - L1MC4 LINE L1 -294 7748 7347 1520 296 104 20 chr12 39844709 39845839 -104436650 - L1ME3A LINE L1 -9 6161 4931 809 275 94 13 chr12 39845845 39846321 -104436168 - L1ME3A LINE L1 -1329 4817 4303 308 319 125 41 chr12 39846426 39846746 -104435743 - L1ME3A LINE L1 -1968 4178 3832 448 236 60 76 chr12 39846783 39846952 -104435537 - L1MC4 LINE L1 -27 8015 7850 1796 166 76 17 chr12 39846952 39847296 -104435193 + THE1B LTR MaLR 1 364 0 448 236 60 76 chr12 39847296 39847376 -104435113 - L1MC4 LINE L1 -192 7850 7770 365 294 56 50 chr12 39847388 39847888 -104434601 - L1ME3A LINE L1 -2299 3847 3345 279 250 38 0 chr12 39847913 39847993 -104434496 - L1ME1 LINE L1 -7 6159 6077 * 1093 249 84 14 chr12 39847972 39848764 -104433725 - L1ME1 LINE L1 -6 6160 5319 25 31 0 0 chr12 39848764 39848796 -104433693 + AT_rich Low_complexity Low_complexity 1 32 0 232 222 103 56 chr12 39850092 39850218 -104432271 - MIR SINE MIR -54 208 77 711 326 122 19 chr12 39850381 39850878 -104431611 + L2 LINE L2 2544 3107 -206 332 322 101 25 chr12 39851657 39851856 -104430633 + LTR33 LTR ERVL 307 520 -1 1110 251 14 11 chr12 39852276 39852563 -104429926 - L1ME2 LINE L1 -75 6089 5802 1065 102 0 19 chr12 39852563 39852720 -104429769 - MER4E LTR ERV1 0 766 613 2625 149 12 2 chr12 39852720 39853150 -104429339 + MER57B LTR ERV1 1 434 0 3043 162 11 60 chr12 39853150 39853457 -104429032 + MER57B-int LTR ERV1 1 269 -7268 2102 131 0 0 chr12 39853457 39853762 -104428727 - AluSx SINE Alu -2 310 6 3043 162 11 60 chr12 39853762 39854021 -104428468 + MER57B-int LTR ERV1 269 539 -6998 29 47 0 0 chr12 39854021 39854064 -104428425 + AT_rich Low_complexity Low_complexity 1 43 0 2067 112 0 0 chr12 39854064 39854349 -104428140 - AluY SINE Alu -26 285 1 2004 144 0 0 chr12 39854913 39855212 -104427277 + AluSq SINE Alu 1 299 -14 2061 109 4 0 chr12 39855231 39855534 -104426955 + AluSp SINE Alu 7 310 0 1187 172 15 37 chr12 39855538 39855552 -104426937 - L1M2 LINE L1 -484 5807 5794 321 26 0 0 chr12 39855552 39855590 -104426899 + (TG)n Simple_repeat Simple_repeat 1 38 0 1187 172 15 37 chr12 39855590 39855843 -104426646 - L1M2 LINE L1 -497 5794 5546 1302 98 6 11 chr12 39855858 39856041 -104426448 - AluYa5 SINE Alu -17 294 113 1038 159 0 0 chr12 39856199 39856356 -104426133 - AluSg/x SINE Alu -14 298 142 1989 151 6 3 chr12 39856490 39856801 -104425688 + AluSq SINE Alu 1 312 -1 450 303 119 33 chr12 39856934 39857279 -104425210 + L1ME3 LINE L1 5423 5737 -425 1847 157 3 3 chr12 39857279 39857584 -104424905 - AluSx SINE Alu -7 305 1 2042 121 3 38 chr12 39857584 39857758 -104424731 - AluSx SINE Alu -6 306 146 1797 151 11 0 chr12 39857758 39858042 -104424447 - AluY SINE Alu -16 295 9 2042 121 3 38 chr12 39858042 39858181 -104424308 - AluSx SINE Alu -166 146 4 450 303 119 33 chr12 39858181 39858320 -104424169 + L1ME3 LINE L1 5736 5950 -212 1629 127 4 28 chr12 39858364 39858617 -104423872 + AluSg/x SINE Alu 65 311 -1 831 272 62 6 chr12 39859036 39859359 -104423130 + L1MA9 LINE L1 5934 6274 -38 1667 144 36 18 chr12 39859385 39859663 -104422826 + AluSg SINE Alu 1 283 -27 1077 172 4 3 chr12 39859778 39864171 -104418318 + ALR/Alpha Satellite centromeric 1 4396 -8 6451 125 4 3 chr12 39864171 39865139 -104417350 - LTR5 LTR ERVK 0 969 1 1227 171 4 2 chr12 39865151 39882655 -104399834 + ALR/Alpha Satellite centromeric 1 17533 -48 1047 173 4 3 chr12 39882684 39887782 -104394707 + ALR/Alpha Satellite centromeric 1 5100 -65 35760 68 3 5 chr12 39887783 39892493 -104389996 + L1PA3 LINE L1 1 4701 -1445 7208 33 22 1 chr12 39892497 39893697 -104388792 + L1PA3 LINE L1 4935 6152 -3 1083 171 5 2 chr12 39893697 39901569 -104380920 + ALR/Alpha Satellite centromeric 1 7895 -8 1066 182 3 2 chr12 39901580 39903290 -104379199 + ALR/Alpha Satellite centromeric 1 1712 0 372 22 0 0 chr12 39903296 39903341 -104379148 + (TTA)n Simple_repeat Simple_repeat 1 45 0 7281 38 7 0 chr12 39903344 39904677 -104377812 - L1PA3 LINE L1 -20 6135 4797 5069 47 0 0 chr12 39904677 39905315 -104377174 + L1PA3 LINE L1 4142 4779 -1367 1059 167 8 5 chr12 39905315 39911030 -104371459 + ALR/Alpha Satellite centromeric 1 6052 -1646 2883 13 0 0 chr12 39911030 39911345 -104371144 - AluYb8 SINE Alu -3 315 1 1059 167 8 5 chr12 39911345 39912990 -104369499 + ALR/Alpha Satellite centromeric 6052 7692 -6 41587 58 6 5 chr12 39912994 39919138 -104363351 + L1PA4 LINE L1 1 6152 -3 974 170 7 1 chr12 39919140 39920827 -104361662 + ALR/Alpha Satellite centromeric 1 1696 -32 1069 172 4 2 chr12 39920870 39932024 -104350465 - ALR/Alpha Satellite centromeric 0 11176 1 221 197 33 0 chr12 39932198 39932259 -104350230 + GA-rich Low_complexity Low_complexity 1 63 0 282 87 0 0 chr12 39932259 39932305 -104350184 + (CA)n Simple_repeat Simple_repeat 2 47 0 1433 235 73 60 chr12 39932312 39933197 -104349292 - SST1 Satellite centromeric -1 1562 666 424 119 0 30 chr12 39933799 39933866 -104348623 - Alu SINE Alu -13 299 235 2581 185 142 56 chr12 39933866 39935075 -104347414 - MER52C LTR ERV1 0 1278 1 1969 143 0 3 chr12 39935555 39935842 -104346647 + AluSq SINE Alu 3 288 -25 2187 126 0 0 chr12 39936090 39936392 -104346097 + AluSq SINE Alu 1 302 -11 1458 188 7 41 chr12 39937357 39937649 -104344840 + AluJo SINE Alu 1 282 -30 328 294 17 8 chr12 39937843 39937961 -104344528 + LTR16C LTR ERVL 359 477 -14 4785 154 1 34 chr12 39937961 39938099 -104344390 - Tigger1 DNA MER2_type 0 2418 2277 1837 129 65 0 chr12 39938099 39938378 -104344111 + AluSx SINE Alu 2 298 -14 4785 154 1 34 chr12 39938378 39938912 -104343577 - Tigger1 DNA MER2_type -141 2277 1781 2134 130 3 0 chr12 39938912 39939211 -104343278 + AluSp SINE Alu 1 300 -13 4785 154 1 34 chr12 39939211 39939441 -104343048 - Tigger1 DNA MER2_type -637 1781 1545 526 134 244 25 chr12 39939429 39939548 -104342941 - Tigger1 DNA MER2_type -1210 1208 1064 * 1592 187 3 36 chr12 39939548 39939853 -104342636 - AluJb SINE Alu -17 295 1 745 168 18 18 chr12 39940411 39940578 -104341911 + ALR/Alpha Satellite centromeric 3 169 0 * 1197 150 4 2 chr12 39940428 39967341 -104315148 + ALR/Alpha Satellite centromeric 1 27099 -5212 980 56 0 0 chr12 39967341 39967466 -104315023 - L1PA3 LINE L1 -5 6150 6026 1197 150 4 2 chr12 39967466 39972652 -104309837 + ALR/Alpha Satellite centromeric 27099 32275 -36 2553 198 15 11 chr12 39972754 39973274 -104309215 - L1MC2 LINE L1 -207 6137 5616 207 288 25 0 chr12 39973275 39973355 -104309134 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 * 223 284 11 11 chr12 39973299 39973387 -104309102 + (TA)n Simple_repeat Simple_repeat 2 89 0 1435 132 207 0 chr12 39973547 39973789 -104308700 - AluSq SINE Alu -21 292 1 1453 161 4 28 chr12 39974134 39974388 -104308101 - AluSg/x SINE Alu 0 312 65 233 247 54 21 chr12 39974435 39974528 -104307961 - L1ME3A LINE L1 -223 5947 5852 1809 156 9 38 chr12 39974568 39974709 -104307780 + AluSx SINE Alu 1 145 -167 1747 160 11 0 chr12 39974709 39974991 -104307498 + AluY SINE Alu 8 292 -19 1809 156 9 38 chr12 39974991 39975164 -104307325 + AluSx SINE Alu 145 306 -6 1860 150 0 3 chr12 39975166 39975453 -104307036 + AluSx SINE Alu 3 288 -24 53 17 0 0 chr12 39975453 39975513 -104306976 + AT_rich Low_complexity Low_complexity 1 60 0 329 323 66 38 chr12 39975528 39975875 -104306614 - L1ME3A LINE L1 -405 5757 5413 1993 132 7 20 chr12 39975991 39976295 -104306194 - AluSq SINE Alu -9 304 5 1758 176 0 7 chr12 39977146 39977436 -104305053 - AluJb SINE Alu -24 288 1 508 122 0 0 chr12 39977566 39977640 -104304849 + AluSg/x SINE Alu 137 210 -100 201 74 0 0 chr12 39977992 39978019 -104304470 + (ATAAG)n Simple_repeat Simple_repeat 5 31 0 1260 236 28 10 chr12 39978150 39978462 -104304027 + MER93a LTR ERV1 4 366 -36 1214 152 4 1 chr12 39978570 39980402 -104302087 + ALR/Alpha Satellite centromeric 1 1837 -41 261 0 0 0 chr12 39981181 39981210 -104301279 + (T)n Simple_repeat Simple_repeat 1 29 0 971 202 11 5 chr12 39981210 39982366 -104300123 - ALR/Alpha Satellite centromeric 0 1162 1 630 280 126 43 chr12 39982476 39983055 -104299434 + SST1 Satellite centromeric 132 758 -805 226 303 65 19 chr12 39983243 39983398 -104299091 + SST1 Satellite centromeric 1391 1552 -11 231 258 0 0 chr12 39983416 39983482 -104299007 + (TG)n Simple_repeat Simple_repeat 1 66 0 753 290 50 52 chr12 39984562 39985103 -104297386 + SST1 Satellite centromeric 132 671 -892 406 277 66 69 chr12 39985506 39985914 -104296575 + SST1 Satellite centromeric 1130 1536 -27 341 165 10 0 chr12 39985919 39986016 -104296473 + (TG)n Simple_repeat Simple_repeat 1 98 0 1006 193 16 2 chr12 39986640 39986965 -104295524 - ALR/Alpha Satellite centromeric 0 329 1 1050 193 9 5 chr12 39986980 39990533 -104291956 - ALR/Alpha Satellite centromeric -1 3565 1 2946 259 65 51 chr12 39990825 39991080 -104291409 + SST1 Satellite centromeric 1 251 -1312 225 0 0 0 chr12 39991080 39991105 -104291384 + (CTGGGG)n Simple_repeat Simple_repeat 3 27 0 2946 259 65 51 chr12 39991105 39992390 -104290099 + SST1 Satellite centromeric 251 1562 -1 222 91 0 0 chr12 39992394 39992427 -104290062 + (TG)n Simple_repeat Simple_repeat 2 34 0 249 210 16 0 chr12 39992427 39992489 -104290000 + CT-rich Low_complexity Low_complexity 1 63 0 2066 268 63 43 chr12 39993211 39994571 -104287918 + SST1 Satellite centromeric 1 1387 -7 249 33 0 0 chr12 39994586 39994616 -104287873 + (TG)n Simple_repeat Simple_repeat 2 31 0 245 196 18 0 chr12 39994616 39994672 -104287817 + CT-rich Low_complexity Low_complexity 1 57 0 265 115 16 16 chr12 39994675 39994736 -104287753 + (TG)n Simple_repeat Simple_repeat 1 61 0 516 278 69 19 chr12 39995425 39995641 -104286848 + SST1 Satellite centromeric 6 232 -1331 1297 297 61 53 chr12 39995652 39996484 -104286005 + SST1 Satellite centromeric 413 1251 -312 7325 162 27 17 chr12 39997036 39998429 -104284060 + SST1 Satellite centromeric 1 1406 -157 830 142 0 15 chr12 39998512 39998646 -104283843 - AluSg/x SINE Alu -24 286 155 1252 173 127 11 chr12 39998652 39998935 -104283554 + SST1 Satellite centromeric 1238 1553 -10 220 133 22 22 chr12 39998979 39999024 -104283465 + CT-rich Low_complexity Low_complexity 2 46 0 807 193 7 0 chr12 40000004 40000144 -104282345 + AluY SINE Alu 1 141 -170 1984 133 11 3 chr12 40000147 40000432 -104282057 + AluSq SINE Alu 1 287 -26 456 51 0 0 chr12 40000442 40000501 -104281988 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 2079 136 0 0 chr12 40000621 40000907 -104281582 + AluSx SINE Alu 11 296 -16 375 223 0 39 chr12 40001259 40001362 -104281127 + MER33 DNA MER1_type 37 135 -189 868 119 22 15 chr12 40001362 40001496 -104280993 + FLAM_C SINE Alu 1 135 -8 1634 169 10 65 chr12 40001503 40001810 -104280679 + AluJb SINE Alu 3 292 -20 1382 149 9 0 chr12 40001830 40002045 -104280444 + AluSg/x SINE Alu 77 293 -17 333 0 0 0 chr12 40002053 40002090 -104280399 + (CA)n Simple_repeat Simple_repeat 2 38 0 1518 177 77 3 chr12 40002181 40002481 -104280008 + L1MB8 LINE L1 5848 6169 -9 507 149 21 0 chr12 40002559 40002653 -104279836 - AluSx SINE Alu 0 310 215 975 134 7 7 chr12 40002653 40002795 -104279694 - AluSx SINE Alu -170 142 1 1232 213 4 34 chr12 40002922 40003185 -104279304 + AluJb SINE Alu 1 255 -57 221 130 0 43 chr12 40003266 40003312 -104279177 + (CAAAAA)n Simple_repeat Simple_repeat 6 49 0 192 77 0 0 chr12 40003554 40003580 -104278909 + (CA)n Simple_repeat Simple_repeat 1 26 0 590 80 0 45 chr12 40005160 40005281 -104277208 + AluSg/x SINE Alu 206 312 0 1799 131 8 8 chr12 40005403 40005670 -104276819 + AluSx SINE Alu 24 290 -22 659 160 38 0 chr12 40005698 40005804 -104276685 - AluSq/x SINE Alu -202 111 2 266 276 57 8 chr12 40005928 40006051 -104276438 - HAL1b LINE L1 -5 1343 1215 1707 193 7 0 chr12 40006107 40006412 -104276077 + AluSx SINE Alu 4 310 -2 382 174 18 0 chr12 40006415 40006524 -104275965 + GA-rich Low_complexity Low_complexity 2 112 0 1520 207 19 10 chr12 40006529 40006838 -104275651 + MER44D DNA MER2_type 421 604 -1 262 218 39 0 chr12 40007114 40007196 -104275293 + (TA)n Simple_repeat Simple_repeat 1 85 0 1826 168 3 0 chr12 40007209 40007507 -104274982 - AluSx SINE Alu -13 299 1 1702 191 10 0 chr12 40007540 40007828 -104274661 + AluJb SINE Alu 1 291 -21 264 277 24 0 chr12 40007868 40007951 -104274538 - L1ME LINE L1 -545 5576 5492 2560 201 101 4 chr12 40007953 40008479 -104274010 + MER77 LTR ERV1 1 577 -28 2079 133 0 3 chr12 40008724 40009024 -104273465 - AluY SINE Alu -12 299 1 2298 120 3 0 chr12 40009156 40009464 -104273025 - AluSg SINE Alu -1 309 1 2324 152 19 17 chr12 40009530 40009950 -104272539 - L1PA15 LINE L1 0 6165 5745 2055 239 11 12 chr12 40009960 40010396 -104272093 + L1P LINE L1 4730 5166 -980 1781 124 19 8 chr12 40010396 40010661 -104271828 + AluSg SINE Alu 40 307 -3 2055 239 11 12 chr12 40010661 40010784 -104271705 + L1P LINE L1 5166 5288 -858 250 237 0 40 chr12 40010788 40010864 -104271625 + MER89 LTR ERV1 487 559 0 1907 144 7 7 chr12 40010919 40011203 -104271286 + AluSg SINE Alu 3 286 -24 548 130 0 0 chr12 40011212 40011289 -104271200 + AluS SINE Alu 2 78 -232 1008 163 0 0 chr12 40011403 40011649 -104270840 + (TA)n Simple_repeat Simple_repeat 1 246 0 4889 177 29 14 chr12 40012957 40013923 -104268566 + L1MC2 LINE L1 5361 6341 -3 1954 148 3 0 chr12 40013937 40014227 -104268262 - AluY SINE Alu -20 291 1 945 184 0 6 chr12 40014230 40014388 -104268101 - AluJb SINE Alu -19 293 137 226 37 0 0 chr12 40014404 40014431 -104268058 + L1M LINE L1 5384 5410 -2632 1057 199 12 4 chr12 40014434 40017126 -104265363 - ALR/Alpha Satellite centromeric 0 3406 392 2200 86 55 0 chr12 40017126 40017416 -104265073 - AluY SINE Alu -3 308 3 1057 199 12 4 chr12 40017416 40017812 -104264677 - ALR/Alpha Satellite centromeric -3014 392 1 815 218 10 0 chr12 40017828 40018328 -104264161 - ALR/Alpha Satellite centromeric -1 504 1 943 201 7 9 chr12 40018344 40022243 -104260246 - ALR/Alpha Satellite centromeric -4 3890 1 875 198 8 8 chr12 40022270 40023244 -104259245 - ALR/Alpha Satellite centromeric 0 973 1 297 0 0 0 chr12 40023250 40023283 -104259206 + (T)n Simple_repeat Simple_repeat 1 33 0 935 304 104 19 chr12 40023612 40024145 -104258344 + MER115 DNA AcHobo 15 631 -62 1421 147 11 18 chr12 40024565 40024850 -104257639 - L1MA4 LINE L1 0 6300 6018 354 236 66 158 chr12 40025135 40025376 -104257113 - MIR SINE MIR 0 262 44 1979 141 0 7 chr12 40025476 40025783 -104256706 + AluSx SINE Alu 1 305 0 303 320 50 0 chr12 40025877 40025977 -104256512 - L2 LINE L2 -15 3298 3194 423 322 76 19 chr12 40026530 40026741 -104255748 - MIR SINE MIR -12 250 28 23 68 0 0 chr12 40027112 40027156 -104255333 + AT_rich Low_complexity Low_complexity 1 44 0 297 303 35 7 chr12 40027157 40027302 -104255187 + L1M4 LINE L1 3717 3865 -2281 557 132 0 11 chr12 40027397 40027488 -104255001 - L1PA16 LINE L1 -8 6158 6069 720 190 0 44 chr12 40027726 40027863 -104254626 + FLAM_A SINE Alu 1 131 -2 1228 232 25 9 chr12 40027864 40028205 -104254284 - MER93a LTR ERV1 -7 395 4 575 218 132 10 chr12 40028680 40028877 -104253612 + L1M4 LINE L1 5097 5317 -829 1601 177 3 34 chr12 40028977 40029271 -104253218 + AluJb SINE Alu 21 305 -7 2002 169 7 0 chr12 40030094 40030402 -104252087 - AluSx SINE Alu -2 310 1 1958 144 3 13 chr12 40030690 40030995 -104251494 - AluSx SINE Alu -10 302 1 21 0 0 0 chr12 40031167 40031188 -104251301 + AT_rich Low_complexity Low_complexity 1 21 0 569 96 11 0 chr12 40031280 40031374 -104251115 - AluY SINE Alu 0 311 217 1167 130 0 11 chr12 40031601 40031785 -104250704 + AluSq SINE Alu 122 303 -10 1948 132 7 0 chr12 40031793 40032082 -104250407 + AluSx SINE Alu 1 291 -21 1940 143 16 0 chr12 40032088 40032395 -104250094 + AluSq SINE Alu 1 312 -1 713 217 62 76 chr12 40032842 40033118 -104249371 + PABL_B LTR ERV1 354 625 -42 1424 183 40 12 chr12 40033562 40033884 -104248605 + L1MB8 LINE L1 5848 6178 0 559 151 0 0 chr12 40033968 40034061 -104248428 - AluSx SINE Alu -3 306 214 943 162 0 0 chr12 40034061 40034203 -104248286 - AluSx SINE Alu -171 142 1 1620 182 14 14 chr12 40034333 40034624 -104247865 + AluJb SINE Alu 5 295 -17 189 74 0 0 chr12 40034707 40034734 -104247755 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr12 40035466 40035487 -104247002 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 1850 160 10 0 chr12 40036578 40036872 -104245617 - AluSx SINE Alu -15 297 1 1819 161 11 0 chr12 40036961 40037240 -104245249 - AluSx SINE Alu -28 284 3 232 271 57 8 chr12 40037375 40037497 -104244992 - HAL1b LINE L1 -6 1342 1215 1969 154 3 22 chr12 40037550 40037868 -104244621 + AluSx SINE Alu 1 312 0 327 88 59 15 chr12 40037875 40037943 -104244546 + GA-rich Low_complexity Low_complexity 1 71 0 1476 202 13 3 chr12 40037943 40038245 -104244244 + MER44D DNA MER2_type 428 604 -1 273 200 57 19 chr12 40038545 40038616 -104243873 + (TA)n Simple_repeat Simple_repeat 2 80 -30 1922 154 7 0 chr12 40038616 40038915 -104243574 - AluSx SINE Alu -11 301 1 273 200 57 19 chr12 40038915 40038948 -104243541 + (TA)n Simple_repeat Simple_repeat 80 110 0 1856 180 3 0 chr12 40038948 40039248 -104243241 + AluJb SINE Alu 1 301 -11 2070 222 118 6 chr12 40039358 40039875 -104242614 + MER77 LTR ERV1 1 575 -30 1925 142 0 0 chr12 40040249 40040530 -104241959 - AluSg SINE Alu -1 309 29 765 132 0 37 chr12 40040580 40040747 -104241742 + AluSp/q SINE Alu 172 313 0 494 82 14 0 chr12 40040952 40041025 -104241464 - AluSq/x SINE Alu -179 133 60 1224 136 0 31 chr12 40041033 40041224 -104241265 - AluSx SINE Alu -125 187 3 583 214 43 21 chr12 40041245 40041385 -104241104 + L2 LINE L2 3167 3309 -4 227 182 0 0 chr12 40041393 40041437 -104241052 - Charlie1 DNA MER1_type 0 2761 2718 920 220 9 37 chr12 40041446 40041664 -104240825 - AluSx SINE Alu -100 212 1 39 38 0 0 chr12 40042132 40042185 -104240304 + AT_rich Low_complexity Low_complexity 1 53 0 1161 208 27 7 chr12 40042185 40042484 -104240005 - L1MC/D LINE L1 -717 5627 5370 1000 178 0 0 chr12 40042489 40042646 -104239843 + FRAM SINE Alu 1 157 -19 1826 157 0 0 chr12 40042649 40042930 -104239559 + AluY SINE Alu 1 281 -30 2060 179 27 74 chr12 40043056 40043335 -104239154 + L1MB3 LINE L1 5334 5625 -558 1652 142 0 0 chr12 40043335 40043568 -104238921 + AluSg SINE Alu 1 233 -77 2060 179 27 74 chr12 40043568 40043587 -104238902 + L1MB3 LINE L1 5625 5643 -540 387 0 0 0 chr12 40043587 40043630 -104238859 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2060 179 27 74 chr12 40043630 40043854 -104238635 + L1MB3 LINE L1 5643 5832 -351 22 35 0 0 chr12 40043928 40043957 -104238532 + AT_rich Low_complexity Low_complexity 1 29 0 6909 121 2 10 chr12 40044637 40045704 -104236785 - THE1A-int LTR MaLR -522 1058 1 2344 113 3 43 chr12 40045704 40046074 -104236415 - THE1A LTR MaLR 0 355 1 499 263 46 46 chr12 40046074 40046359 -104236130 + L1ME LINE L1 5492 5776 -386 965 188 65 115 chr12 40046766 40047150 -104235339 + MLT1A1 LTR MaLR 1 365 0 1138 214 8 28 chr12 40048404 40048652 -104233837 + AluJo SINE Alu 16 258 -54 736 279 92 44 chr12 40048653 40049337 -104233152 + SST1 Satellite centromeric 847 1563 0 242 138 17 0 chr12 40049357 40049415 -104233074 + CT-rich Low_complexity Low_complexity 2 60 0 207 167 0 0 chr12 40049414 40049456 -104233033 + (TG)n Simple_repeat Simple_repeat 1 42 0 * 388 259 62 12 chr12 40049970 40050132 -104232357 + SST1 Satellite centromeric 256 425 -1138 6539 82 5 18 chr12 40050246 40050623 -104231866 + L1PA8 LINE L1 4972 5352 -820 2061 132 0 10 chr12 40050623 40050918 -104231571 + AluSq SINE Alu 1 292 -21 6539 82 5 18 chr12 40050918 40051735 -104230754 + L1PA8 LINE L1 5352 6169 -3 1864 167 11 11 chr12 40052736 40053083 -104229406 + MER7A DNA MER2_type 1 345 -1 308 316 23 30 chr12 40053519 40053652 -104228837 + L2 LINE L2 3178 3309 -4 24 85 0 0 chr12 40053958 40054017 -104228472 + AT_rich Low_complexity Low_complexity 1 59 0 1555 197 0 33 chr12 40054167 40054467 -104228022 + AluJo SINE Alu 1 290 -22 22 0 0 0 chr12 40054752 40054774 -104227715 + AT_rich Low_complexity Low_complexity 1 22 0 4584 34 0 0 chr12 40055436 40056017 -104226472 - L1PA2 LINE L1 -1282 4864 4284 7511 29 1 2 chr12 40056017 40057295 -104225194 + L1PA2 LINE L1 4875 6151 -4 21 0 0 0 chr12 40057513 40057534 -104224955 + AT_rich Low_complexity Low_complexity 1 21 0 1231 187 49 113 chr12 40059795 40060099 -104222390 - MLT1A1 LTR MaLR 0 365 90 2265 112 0 0 chr12 40060099 40060385 -104222104 - AluSg SINE Alu -24 286 1 1231 187 49 113 chr12 40060385 40060470 -104222019 - MLT1A1 LTR MaLR -275 90 1 1062 231 52 4 chr12 40061517 40061638 -104220851 + AluJo SINE Alu 1 115 -197 243 0 0 0 chr12 40061638 40061665 -104220824 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1062 231 52 4 chr12 40061665 40061772 -104220717 + AluJo SINE Alu 115 240 -72 595 89 0 11 chr12 40062191 40062281 -104220208 + L1PA16 LINE L1 6069 6157 -9 21 71 0 0 chr12 40062525 40062567 -104219922 + AT_rich Low_complexity Low_complexity 1 42 0 275 398 0 0 chr12 40062939 40063042 -104219447 + MIR SINE MIR 28 130 -132 1189 153 5 1 chr12 40063042 40071425 -104211064 + ALR/Alpha Satellite centromeric 1 8423 -31 1056 251 29 14 chr12 40071543 40071822 -104210667 - MLT1A1 LTR MaLR -57 308 26 1052 309 74 28 chr12 40073352 40073963 -104208526 + L2 LINE L2 2574 3223 -90 883 236 5 5 chr12 40073971 40074191 -104208298 - L1MB1 LINE L1 -13 6155 5936 1046 182 4 4 chr12 40074345 40077487 -104205002 + ALR/Alpha Satellite centromeric 1 3141 -35 1096 162 3 3 chr12 40077498 40081270 -104201219 + ALR/Alpha Satellite centromeric 1 3771 -10 1158 147 4 3 chr12 40081370 40087026 -104195463 - ALR/Alpha Satellite centromeric 0 5662 1 1170 164 10 3 chr12 40087054 40097867 -104184622 + ALR/Alpha Satellite centromeric 1 10893 -18 1164 159 5 1 chr12 40098012 40099006 -104183483 + ALR/Alpha Satellite centromeric 1 997 0 1222 172 6 0 chr12 40099018 40106018 -104176471 + ALR/Alpha Satellite centromeric 1 7037 0 1163 177 10 3 chr12 40106029 40111018 -104171471 + ALR/Alpha Satellite centromeric 1 5024 0 11397 51 9 1 chr12 40111028 40113743 -104168746 - L1PA3 LINE L1 -1 6154 3308 6314 44 0 0 chr12 40113740 40114551 -104167938 + L1PA3 LINE L1 2483 3293 -2853 * 1045 162 13 12 chr12 40114553 40118026 -104164463 + ALR/Alpha Satellite centromeric 1 3475 0 2860 27 0 0 chr12 40118035 40118372 -104164117 + L1PA2 LINE L1 5814 6150 -5 2191 144 11 11 chr12 40118392 40118767 -104163722 + L1PB1 LINE L1 5769 6143 -8 27 49 0 0 chr12 40118767 40118808 -104163681 + AT_rich Low_complexity Low_complexity 1 41 0 1023 179 2 1 chr12 40118833 40120101 -104162388 + ALR/Alpha Satellite centromeric 1 1269 -13 1088 172 4 3 chr12 40120114 40122505 -104159984 + ALR/Alpha Satellite centromeric 1 2393 -13 1017 172 3 1 chr12 40122517 40124393 -104158096 + ALR/Alpha Satellite centromeric 1 1880 -8 6631 125 5 3 chr12 40124393 40125360 -104157129 - LTR5 LTR ERVK 0 969 1 1000 171 3 5 chr12 40125372 40128628 -104153861 + ALR/Alpha Satellite centromeric 1 3249 -10 929 159 18 3 chr12 40128640 40129138 -104153351 + ALR/Alpha Satellite centromeric 1 505 -8 2742 125 3 0 chr12 40129138 40129530 -104152959 - LTR5 LTR ERVK 0 969 577 1258 99 5 42 chr12 40129540 40129731 -104152758 - LTR5 LTR ERVK -785 184 1 1127 153 8 4 chr12 40129732 40130746 -104151743 + ALR/Alpha Satellite centromeric 1 1017 -22 1058 162 5 2 chr12 40130874 40146536 -104135953 - ALR/Alpha Satellite centromeric -3 15698 1 4984 35 0 0 chr12 40146536 40147160 -104135329 - L1PA3 LINE L1 -1493 4653 4030 7515 29 0 1 chr12 40147160 40148666 -104133823 + L1PA3 LINE L1 4666 6171 0 972 172 2 3 chr12 40148701 40150674 -104131815 - ALR/Alpha Satellite centromeric 0 1969 1 1051 171 6 3 chr12 40150689 40156072 -104126417 - ALR/Alpha Satellite centromeric 0 5403 1 5372 90 39 25 chr12 40156073 40157061 -104125428 + SVA Other Other 2 863 -597 3130 83 31 74 chr12 40157670 40158370 -104124119 + SVA Other Other 336 868 -592 242 272 15 22 chr12 40158466 40158602 -104123887 + ALR/Alpha Satellite centromeric 9 143 -29 27968 75 3 3 chr12 40159102 40163032 -104119457 - L1P LINE L1 -2216 3930 1 1060 164 3 1 chr12 40163032 40165422 -104117067 + ALR/Alpha Satellite centromeric 1 2395 -36 1005 166 10 1 chr12 40165537 40169058 -104113431 + ALR/Alpha Satellite centromeric 1 3552 -7 1164 178 8 4 chr12 40169073 40170357 -104112132 + ALR/Alpha Satellite centromeric 1 1277 -4694 2111 141 0 0 chr12 40170357 40170656 -104111833 - AluY SINE Alu -12 299 1 1164 178 8 4 chr12 40170656 40175016 -104107473 + ALR/Alpha Satellite centromeric 1277 5970 -1 6423 67 31 45 chr12 40175026 40175993 -104106496 - SVA Other Other -1 1385 433 919 109 15 30 chr12 40176006 40176208 -104106281 - SVA Other Other -592 794 596 1874 55 0 4 chr12 40176361 40176598 -104105891 + L1PA4 LINE L1 4466 4701 -1445 1049 158 14 14 chr12 40176602 40176811 -104105678 + L1PA4 LINE L1 4935 5143 -1003 29 0 0 0 chr12 40176853 40176882 -104105607 + AT_rich Low_complexity Low_complexity 1 29 0 35 83 0 0 chr12 40177157 40177241 -104105248 + AT_rich Low_complexity Low_complexity 1 84 0 180 0 0 0 chr12 40177358 40177378 -104105111 + (G)n Simple_repeat Simple_repeat 1 20 0 21 80 0 0 chr12 40177485 40177510 -104104979 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr12 40177520 40177544 -104104945 + (C)n Simple_repeat Simple_repeat 1 24 0 7788 34 6 0 chr12 40227681 40228560 -104053929 + L1PA4 LINE L1 5271 6154 -1 1902 133 0 61 chr12 40228581 40228911 -104053578 - AluSg SINE Alu 0 310 1 1120 119 6 0 chr12 40228913 40229090 -104053399 + L1P LINE L1 4999 5176 -970 1093 167 8 3 chr12 40229190 40230172 -104052317 - ALR/Alpha Satellite centromeric -1 986 1 40834 59 2 0 chr12 40230272 40235351 -104047138 - L1P LINE L1 -1056 5090 4 1959 148 6 0 chr12 40235362 40235687 -104046802 - L1P LINE L1 -1141 5005 4679 443 207 0 0 chr12 40236420 40236507 -104045982 - AluJ/FRAM SINE Alu 0 312 226 1332 238 0 4 chr12 40236543 40236812 -104045677 + AluJo SINE Alu 1 268 -44 263 111 0 19 chr12 40236847 40236901 -104045588 + (TA)n Simple_repeat Simple_repeat 2 54 0 228 196 71 18 chr12 40241842 40241898 -104040591 - L1MCc LINE L1 -5507 916 858 2214 136 0 0 chr12 40242288 40242597 -104039892 - AluSg SINE Alu 0 310 2 33123 55 4 2 chr12 40245237 40250201 -104032288 + L1PA4 LINE L1 1177 6149 -6 1159 164 0 0 chr12 40250203 40250745 -104031744 + ALR/Alpha Satellite centromeric 1 542 -11 1195 163 8 5 chr12 40250757 40255109 -104027380 + ALR/Alpha Satellite centromeric 1 4364 -22 1225 166 7 3 chr12 40255122 40264558 -104017931 + ALR/Alpha Satellite centromeric 1 9397 -2555 252 0 0 0 chr12 40264558 40264586 -104017903 + (CA)n Simple_repeat Simple_repeat 1 28 0 1225 166 7 3 chr12 40264586 40266628 -104015861 + ALR/Alpha Satellite centromeric 9397 11880 -72 2211 111 0 46 chr12 40266628 40266952 -104015537 + AluY SINE Alu 1 309 -2 1225 166 7 3 chr12 40266952 40267025 -104015464 + ALR/Alpha Satellite centromeric 11880 11951 -1 180 111 0 0 chr12 40267026 40267053 -104015436 + (T)n Simple_repeat Simple_repeat 1 27 0 2455 104 0 0 chr12 40267053 40267379 -104015110 - LTR17 LTR ERV1 -454 326 1 9726 75 7 4 chr12 40267379 40268606 -104013883 - HERV17 LTR ERV1 0 8626 7397 9500 103 6 4 chr12 40268589 40269965 -104012524 - HERV17 LTR ERV1 -2947 5679 3799 * 833 207 5 8 chr12 40269965 40270215 -104012274 + ALR/Alpha Satellite centromeric 1 249 -22 35382 58 4 1 chr12 40270218 40276353 -104006136 + L1PA4 LINE L1 1 6149 -6 1159 164 0 0 chr12 40276355 40276897 -104005592 + ALR/Alpha Satellite centromeric 1 542 -11 1195 177 9 4 chr12 40276909 40282947 -103999542 + ALR/Alpha Satellite centromeric 1 6377 -401 1811 141 3 49 chr12 40282947 40283252 -103999237 + AluY SINE Alu 1 291 -20 1195 177 9 4 chr12 40283252 40283655 -103998834 + ALR/Alpha Satellite centromeric 6377 6777 -1 1628 195 7 3 chr12 40283655 40283947 -103998542 + AluSp SINE Alu 1 293 -20 1055 175 2 1 chr12 40283963 40284978 -103997511 + ALR/Alpha Satellite centromeric 1 1015 -15 3108 168 23 51 chr12 40284978 40285375 -103997114 - L1P LINE L1 -4369 1777 1406 1975 102 4 4 chr12 40285375 40285641 -103996848 - AluY SINE Alu -45 266 1 3108 168 23 51 chr12 40285641 40285933 -103996556 - L1P LINE L1 -4740 1406 1107 1766 178 0 3 chr12 40285939 40286226 -103996263 - AluSg SINE Alu -14 296 11 732 181 7 7 chr12 40286994 40287132 -103995357 + AluJb SINE Alu 4 141 -171 1001 178 8 58 chr12 40287778 40287863 -103994626 - L1MB4 LINE L1 -274 5906 5818 1388 220 0 30 chr12 40287863 40288163 -103994326 - AluJb SINE Alu -20 292 2 1001 178 8 58 chr12 40288163 40288319 -103994170 - L1MB4 LINE L1 -362 5818 5677 1445 173 0 0 chr12 40288386 40288611 -103993878 + AluJb SINE Alu 1 225 -87 1291 218 74 67 chr12 40288612 40289127 -103993362 - L1MB4 LINE L1 -504 5676 5174 420 300 7 0 chr12 40289212 40289362 -103993127 - L1MB4 LINE L1 -979 5167 5017 2528 148 19 7 chr12 40289366 40289784 -103992705 - L1PA14 LINE L1 -9 6152 5730 7579 198 49 23 chr12 40289824 40290142 -103992347 - L1PA14 LINE L1 -417 5744 5436 2298 122 0 0 chr12 40290142 40290445 -103992044 - AluSc SINE Alu -6 303 1 7579 198 49 23 chr12 40290445 40292464 -103990025 - L1PA14 LINE L1 -725 5436 3347 1662 271 43 32 chr12 40292503 40293219 -103989270 - L1MB4 LINE L1 -1115 5031 4308 1919 132 45 0 chr12 40293432 40293719 -103988770 + AluSq SINE Alu 1 300 -13 1197 309 30 23 chr12 40293967 40294404 -103988085 + LTR40a LTR ERVL 72 511 -8 322 292 117 0 chr12 40294681 40294801 -103987688 + HERVL40 LTR ERVL 1031 1164 -4366 1309 212 63 0 chr12 40295319 40295588 -103986901 - AluJb SINE Alu -25 287 2 21 36 0 0 chr12 40295638 40295666 -103986823 + AT_rich Low_complexity Low_complexity 1 28 0 288 267 23 118 chr12 40296029 40296250 -103986239 - MIR SINE MIR -18 244 45 29 70 0 0 chr12 40296610 40296667 -103985822 + AT_rich Low_complexity Low_complexity 1 57 0 326 347 17 11 chr12 40296699 40296875 -103985614 + C-rich Low_complexity Low_complexity 1 177 0 188 93 93 0 chr12 40297244 40297319 -103985170 + (TA)n Simple_repeat Simple_repeat 1 82 0 2031 112 0 17 chr12 40297320 40297614 -103984875 - AluSg SINE Alu -21 289 1 1739 166 0 17 chr12 40297768 40298080 -103984409 + AluSx SINE Alu 1 307 0 21 0 0 0 chr12 40298092 40298113 -103984376 + AT_rich Low_complexity Low_complexity 1 21 0 3689 228 48 15 chr12 40298211 40298511 -103983978 + L1M1 LINE L1 1453 1742 -5823 255 61 0 0 chr12 40298511 40298544 -103983945 + (CA)n Simple_repeat Simple_repeat 2 34 0 3689 228 48 15 chr12 40298544 40299053 -103983436 + L1M1 LINE L1 1742 2289 -5276 1395 136 120 12 chr12 40299071 40299329 -103983160 - AluSg SINE Alu -24 286 1 559 182 0 10 chr12 40299401 40299500 -103982989 + MER4A LTR ERV1 1 98 -566 1473 175 8 77 chr12 40299500 40299871 -103982618 + MER4A LTR ERV1 261 664 0 1771 151 58 0 chr12 40300245 40300536 -103981953 - AluSx SINE Alu -4 308 1 826 279 40 5 chr12 40301138 40301360 -103981129 + MIR SINE MIR 18 247 -15 1832 163 27 10 chr12 40301432 40301732 -103980757 + AluJb SINE Alu 1 305 -7 278 221 54 188 chr12 40301733 40301856 -103980633 + MIR SINE MIR 47 124 -138 2027 149 0 0 chr12 40301856 40302144 -103980345 + AluSx SINE Alu 1 288 -24 278 221 54 188 chr12 40302144 40302260 -103980229 + MIR SINE MIR 124 254 -8 526 264 113 59 chr12 40302282 40302457 -103980032 - MIR SINE MIR 0 262 69 1609 179 4 11 chr12 40302457 40302731 -103979758 - AluJo SINE Alu -23 289 18 526 264 113 59 chr12 40302731 40302794 -103979695 - MIR SINE MIR -193 69 11 206 61 0 30 chr12 40304051 40304084 -103978405 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 217 64 85 0 chr12 40304367 40304414 -103978075 + (TA)n Simple_repeat Simple_repeat 2 52 0 1984 143 0 0 chr12 40304414 40304700 -103977789 - AluSx SINE Alu -26 286 1 1702 182 7 3 chr12 40305050 40305341 -103977148 + AluSx SINE Alu 1 292 -20 1864 161 13 0 chr12 40306202 40306500 -103975989 + AluSx SINE Alu 1 302 -10 1607 157 0 116 chr12 40306512 40306849 -103975640 + AluJo SINE Alu 5 302 0 2083 132 3 0 chr12 40306856 40307152 -103975337 + AluSq SINE Alu 1 297 -16 1582 136 31 8 chr12 40307272 40307530 -103974959 + AluSx SINE Alu 1 264 -48 835 132 8 0 chr12 40307530 40307651 -103974838 - AluSq SINE Alu -128 185 64 993 203 67 17 chr12 40307790 40307853 -103974636 - L1MB7 LINE L1 0 6180 6122 569 233 16 8 chr12 40307853 40307982 -103974507 + FLAM_C SINE Alu 3 132 -1 993 203 67 17 chr12 40307982 40308192 -103974297 - L1MB7 LINE L1 -58 6122 5904 1916 130 0 7 chr12 40308603 40308921 -103973568 + AluSg SINE Alu 1 316 0 27 29 0 0 chr12 40308939 40308973 -103973516 + AT_rich Low_complexity Low_complexity 1 34 0 2348 105 3 3 chr12 40309203 40309516 -103972973 + AluSp SINE Alu 1 313 0 23 36 0 54 chr12 40309607 40309663 -103972826 + AT_rich Low_complexity Low_complexity 1 53 0 13429 40 3 1 chr12 40309664 40311971 -103970518 - L1PA2 LINE L1 0 6155 3840 25285 49 5 2 chr12 40311971 40315843 -103966646 + L1PA4 LINE L1 2183 6067 -88 304 259 172 43 chr12 40317483 40317599 -103964890 - AluJb SINE Alu 0 302 172 689 165 0 9 chr12 40317599 40317708 -103964781 + AluJb SINE Alu 180 287 -25 220 143 0 24 chr12 40317799 40317841 -103964648 + (TTA)n Simple_repeat Simple_repeat 2 42 0 566 219 0 0 chr12 40317849 40317963 -103964526 - AluSg/x SINE Alu 0 310 197 299 201 59 46 chr12 40317963 40318115 -103964374 + AluJb SINE Alu 78 218 -84 1290 188 0 39 chr12 40318115 40318371 -103964118 - AluJb SINE Alu -54 258 13 348 145 35 48 chr12 40318404 40318549 -103963940 + CT-rich Low_complexity Low_complexity 2 144 0 1700 154 32 4 chr12 40319187 40319466 -103963023 - AluSx SINE Alu -23 289 3 207 0 0 0 chr12 40319501 40319524 -103962965 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1316 206 29 4 chr12 40319718 40319990 -103962499 - AluSg SINE Alu -31 279 1 356 292 153 15 chr12 40320053 40320255 -103962234 - LTR54B LTR ERV1 -254 244 15 1255 180 137 23 chr12 40320569 40320825 -103961664 + AluJb SINE Alu 1 285 -17 31 58 0 0 chr12 40320891 40320943 -103961546 + AT_rich Low_complexity Low_complexity 1 52 0 779 186 7 7 chr12 40320960 40321100 -103961389 - AluJb SINE Alu -171 141 2 227 54 27 0 chr12 40321104 40321141 -103961348 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2111 128 0 3 chr12 40321833 40322131 -103960358 + AluSg SINE Alu 2 298 -12 1920 139 11 0 chr12 40322148 40322428 -103960061 + AluSp SINE Alu 1 283 -30 23 0 0 0 chr12 40322443 40322466 -103960023 + AT_rich Low_complexity Low_complexity 1 23 0 456 152 0 0 chr12 40322556 40322622 -103959867 - AluJ/FLAM SINE Alu -246 66 1 1606 174 0 21 chr12 40322643 40322924 -103959565 - AluSx SINE Alu -3 309 35 4487 83 2 3 chr12 40322925 40323505 -103958984 + LTR14C LTR ERVK 6 584 -3 266 150 0 0 chr12 40323507 40323547 -103958942 - AluSx SINE Alu -258 41 2 1428 204 75 13 chr12 40323579 40323887 -103958602 - ERVL LTR ERVL -2176 3588 3262 848 124 0 22 chr12 40324015 40324152 -103958337 - FRAM SINE Alu -23 153 20 304 224 0 0 chr12 40324214 40324272 -103958217 - AluJ/monomer SINE Alu -2 300 243 1370 164 4 13 chr12 40324272 40324503 -103957986 - PABL_B LTR ERV1 0 667 439 1730 166 20 0 chr12 40324503 40324799 -103957690 - AluSx SINE Alu -10 302 1 3586 119 0 4 chr12 40324842 40325355 -103957134 + MER9 LTR ERVK 1 511 0 2388 58 0 42 chr12 40326807 40327115 -103955374 + AluY SINE Alu 5 299 -12 187 291 152 0 chr12 40327185 40327264 -103955225 - L2 LINE L2 -498 2816 2726 1948 158 7 7 chr12 40327986 40328339 -103954150 - AluSx SINE Alu 0 354 2 708 274 53 55 chr12 40328373 40328949 -103953540 + L1M4c LINE L1 1185 1761 -4552 464 265 25 50 chr12 40328950 40329229 -103953260 + L1M4c LINE L1 1585 1856 -4528 2226 136 0 0 chr12 40331732 40332041 -103950448 + AluSg SINE Alu 2 310 0 231 196 71 18 chr12 40332431 40332487 -103950002 + L1MCc LINE L1 858 916 -5507 263 111 0 19 chr12 40337426 40337480 -103945009 + (TA)n Simple_repeat Simple_repeat 2 54 0 1304 237 0 7 chr12 40337515 40337785 -103944704 - AluJo SINE Alu -44 268 1 256 297 0 0 chr12 40337821 40337895 -103944594 + AluSp/q SINE Alu 226 299 -4 1947 148 6 0 chr12 40338643 40338968 -103943521 + L1P LINE L1 4679 5005 -1141 30477 63 2 0 chr12 40338979 40342810 -103939679 + L1P LINE L1 4 3840 -2306 24 0 0 0 chr12 40343221 40343245 -103939244 + AT_rich Low_complexity Low_complexity 1 24 0 1749 154 68 0 chr12 40343566 40343845 -103938644 - AluSx SINE Alu -14 298 1 1509 260 18 14 chr12 40343863 40344356 -103938133 - L1MB2 LINE L1 -3 6404 5910 484 256 47 24 chr12 40344343 40344554 -103937935 - L1MB2 LINE L1 -1285 5097 4882 * 7991 87 6 9 chr12 40344603 40345664 -103936825 - MER11C LTR ERVK -14 1057 1 180 0 0 0 chr12 40345680 40345700 -103936789 + (A)n Simple_repeat Simple_repeat 1 20 0 451 191 22 0 chr12 40345700 40345789 -103936700 - L1MB2 LINE L1 -1539 4843 4753 1013 265 36 70 chr12 40345796 40346216 -103936273 - L1MB2 LINE L1 -3265 3117 2684 225 0 0 0 chr12 40346216 40346241 -103936248 + (CA)n Simple_repeat Simple_repeat 2 26 0 1013 265 36 70 chr12 40346241 40346332 -103936157 - L1MB2 LINE L1 -3698 2684 2591 245 27 54 0 chr12 40346332 40346369 -103936120 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1979 79 79 0 chr12 40346375 40346629 -103935860 - AluY SINE Alu -36 275 2 1013 265 36 70 chr12 40346629 40346912 -103935577 - L1MB2 LINE L1 -3796 2586 2347 1617 62 14 0 chr12 40346912 40347121 -103935368 - L1PA4 LINE L1 -7 6148 5937 1176 153 5 3 chr12 40347274 40354727 -103927762 + ALR/Alpha Satellite centromeric 1 7467 -55 779 194 44 5 chr12 40354872 40355078 -103927411 - L1P LINE L1 -934 5212 4999 1880 136 0 61 chr12 40355080 40355410 -103927079 + AluSg SINE Alu 1 310 0 961 294 83 62 chr12 40355417 40355431 -103927058 - L1M1 LINE L1 -4036 2346 2334 1612 56 24 0 chr12 40355431 40355644 -103926845 - L1PA4 LINE L1 -1 6154 5937 961 294 83 62 chr12 40355644 40355802 -103926687 - L1M1 LINE L1 -4048 2334 2181 1954 146 0 20 chr12 40355802 40356104 -103926385 - AluSg SINE Alu -14 296 1 961 294 83 62 chr12 40356104 40356155 -103926334 - L1M1 LINE L1 -4201 2181 2133 2049 122 17 3 chr12 40356155 40356449 -103926040 - AluSx SINE Alu -14 298 1 961 294 83 62 chr12 40356449 40357168 -103925321 - L1M1 LINE L1 -4249 2133 1304 384 244 105 108 chr12 40357136 40357545 -103924944 - L1M1 LINE L1 -4808 1495 1088 * 2083 149 3 0 chr12 40357723 40358025 -103924464 - AluSp SINE Alu -10 303 1 988 261 47 41 chr12 40359038 40359402 -103923087 + MLT1B LTR MaLR 25 390 0 199 22 0 130 chr12 40360149 40360195 -103922294 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1021 237 12 67 chr12 40360195 40360541 -103921948 - L1MA9 LINE L1 -41 6271 5945 6641 23 0 0 chr12 40360807 40361560 -103920929 - L1PA3 LINE L1 0 6155 5403 * 9095 28 0 0 chr12 40361557 40362629 -103919860 + L1PA3 LINE L1 4326 5397 -749 626 159 0 15 chr12 40363691 40363961 -103918528 + AluSx SINE Alu 6 334 0 417 244 78 35 chr12 40363973 40364088 -103918401 + FRAM SINE Alu 5 124 -52 862 42 17 8 chr12 40364098 40364217 -103918272 + (GAAA)n Simple_repeat Simple_repeat 4 123 0 1551 146 50 0 chr12 40364221 40364461 -103918028 + AluSc SINE Alu 50 301 -8 961 191 17 47 chr12 40364576 40364594 -103917895 - AluSg/x SINE Alu 0 310 293 2165 140 0 0 chr12 40364594 40364902 -103917587 - AluSg SINE Alu -2 308 1 961 191 17 47 chr12 40364902 40365118 -103917371 - AluSg/x SINE Alu -17 293 83 1979 119 0 31 chr12 40365128 40365448 -103917041 - AluSg SINE Alu 0 310 1 410 119 0 0 chr12 40365610 40365669 -103916820 - AluJ/FLAM SINE Alu -239 63 5 914 198 140 27 chr12 40365738 40365995 -103916494 - AluJo SINE Alu -16 286 1 219 69 0 0 chr12 40366031 40366060 -103916429 + (T)n Simple_repeat Simple_repeat 1 29 0 203 164 18 55 chr12 40366425 40366480 -103916009 + G-rich Low_complexity Low_complexity 2 54 0 1029 233 22 11 chr12 40366537 40366808 -103915681 + L1PA13 LINE L1 5889 6162 -1 1913 126 7 7 chr12 40367007 40367300 -103915189 - AluSx SINE Alu -9 303 11 686 236 16 16 chr12 40367621 40367812 -103914677 - MER39B LTR ERV1 -1 652 462 689 210 0 7 chr12 40367813 40367951 -103914538 + MER39B LTR ERV1 275 411 -242 1840 156 4 0 chr12 40368169 40368444 -103914045 + AluSp SINE Alu 5 280 -33 201 180 33 33 chr12 40369982 40370043 -103912446 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 436 212 6 11 chr12 40370350 40370529 -103911960 + CT-rich Low_complexity Low_complexity 2 179 0 567 185 0 22 chr12 40370546 40370730 -103911759 + CT-rich Low_complexity Low_complexity 1 180 0 237 301 0 26 chr12 40371136 40371249 -103911240 - L1MC/D LINE L1 -585 5774 5665 1715 140 85 4 chr12 40372112 40372383 -103910106 - AluSg SINE Alu -17 293 1 273 291 31 16 chr12 40372516 40372643 -103909846 - LTR54B LTR ERV1 -352 146 18 829 255 139 24 chr12 40372952 40373203 -103909286 + AluJb SINE Alu 1 280 -32 180 111 0 0 chr12 40373203 40373230 -103909259 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 30 27 0 0 chr12 40373294 40373331 -103909158 + AT_rich Low_complexity Low_complexity 1 37 0 674 181 7 7 chr12 40373348 40373486 -103909003 - AluJb SINE Alu -171 141 4 1793 178 0 3 chr12 40374244 40374531 -103907958 + AluSg SINE Alu 1 286 -24 278 158 37 85 chr12 40374565 40374647 -103907842 + MIR SINE MIR 177 254 -8 581 283 124 9 chr12 40374669 40374844 -103907645 - MIR SINE MIR 0 262 54 1635 192 3 11 chr12 40374844 40375131 -103907358 - AluJo SINE Alu -23 289 5 581 283 124 9 chr12 40375131 40375181 -103907308 - MIR SINE MIR -208 54 11 281 301 116 46 chr12 40376463 40376679 -103905810 + L3 LINE CR1 609 839 -738 517 292 104 0 chr12 40376713 40376867 -103905622 + MIR SINE MIR 44 213 -49 216 158 0 0 chr12 40376874 40376912 -103905577 + (ATGGTG)n Simple_repeat Simple_repeat 1 38 0 1146 156 8 2 chr12 40377044 40387689 -103894800 + ALR/Alpha Satellite centromeric 1 10702 -23 1104 145 4 1 chr12 40387794 40390856 -103891633 + ALR/Alpha Satellite centromeric 1 3069 -12 1128 148 7 3 chr12 40390871 40395897 -103886592 + ALR/Alpha Satellite centromeric 1 5044 -32 1143 137 9 3 chr12 40395997 40404423 -103878066 + ALR/Alpha Satellite centromeric 1 8473 -1 3069 230 22 75 chr12 40404427 40405445 -103877044 + LTR5 LTR ERVK 6 969 0 1135 155 4 2 chr12 40405452 40410030 -103872459 + ALR/Alpha Satellite centromeric 1 4588 -50 652 158 20 40 chr12 40410361 40410658 -103871831 + (ATGGTG)n Simple_repeat Simple_repeat 1 291 0 241 265 0 0 chr12 40410694 40410743 -103871746 - MIR SINE MIR -211 51 3 183 346 13 13 chr12 40410789 40410867 -103871622 + L3 LINE CR1 869 946 -631 2087 135 0 0 chr12 40410982 40411307 -103871182 + AluSq SINE Alu 1 313 0 729 201 7 14 chr12 40411351 40411490 -103870999 + AluJ SINE Alu 4 141 -171 295 267 224 12 chr12 40411490 40411651 -103870838 + L3 LINE CR1 1192 1386 -191 326 253 167 37 chr12 40411774 40411936 -103870553 + MER5A DNA MER1_type 7 189 0 1226 148 18 18 chr12 40413408 40413625 -103868864 - AluJo SINE Alu 0 312 96 1276 196 50 18 chr12 40413771 40414051 -103868438 - AluJo SINE Alu -23 289 1 990 190 0 16 chr12 40414067 40414251 -103868238 + AluJ SINE Alu 132 312 0 230 0 33 0 chr12 40414359 40414389 -103868100 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6693 70 33 0 chr12 40414401 40415269 -103867220 + MER11D LTR ERVK 1 897 0 6163 79 0 3 chr12 40415278 40416134 -103866355 + HERVK11D LTR ERVK 10 862 -6890 36631 46 1 2 chr12 40416134 40420819 -103861670 + HERVK11D LTR ERVK 3073 7752 0 6147 87 27 0 chr12 40420841 40421691 -103860798 + MER11D LTR ERVK 25 897 0 1736 160 7 18 chr12 40421691 40421973 -103860516 - AluSx SINE Alu -33 279 1 278 304 106 50 chr12 40422088 40422249 -103860240 - MIR3 SINE MIR -9 199 30 217 254 17 0 chr12 40423012 40423071 -103859418 - L2 LINE L2 0 3313 3254 180 321 54 0 chr12 40423057 40423113 -103859376 - L2 LINE L2 -696 2618 2560 * 2002 160 26 11 chr12 40424113 40424596 -103857893 + L1M2 LINE L1 2536 3029 -3819 5782 89 15 28 chr12 40424699 40424852 -103857637 + L1PA8 LINE L1 5205 5358 -814 1552 151 52 4 chr12 40424852 40425124 -103857365 + AluSg SINE Alu 1 285 -25 198 0 0 0 chr12 40425127 40425149 -103857340 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5782 89 15 28 chr12 40425149 40425867 -103856622 + L1PA8 LINE L1 5360 6082 -90 571 110 0 0 chr12 40425867 40425949 -103856540 + AluS SINE Alu 1 82 -231 678 48 0 0 chr12 40425949 40426033 -103856456 + L1PA8 LINE L1 6071 6154 -18 548 212 67 44 chr12 40426686 40426862 -103855627 - MER93a LTR ERV1 0 402 191 2236 81 7 0 chr12 40426862 40427160 -103855329 + AluSp SINE Alu 1 300 -13 1874 124 0 20 chr12 40427247 40427546 -103854943 + AluY SINE Alu 6 298 -13 883 314 44 19 chr12 40427582 40428059 -103854430 - L1 LINE L1 -1816 4330 3842 319 182 47 48 chr12 40428057 40428162 -103854327 - L1 LINE L1 -2546 3600 3496 * 996 155 62 0 chr12 40428403 40428870 -103853619 - GSATX Satellite centromeric -8 495 1 1296 158 51 2 chr12 40428889 40431868 -103850621 - GSATX Satellite centromeric -10 3124 1 1280 172 44 5 chr12 40431886 40437477 -103845012 - GSATX Satellite centromeric -22 5810 1 373 186 0 20 chr12 40439917 40440019 -103842470 + GA-rich Low_complexity Low_complexity 3 102 0 362 283 125 87 chr12 40440033 40440298 -103842191 + HAL1 LINE L1 861 1114 -1393 1259 235 3 40 chr12 40440298 40440596 -103841893 + AluJo SINE Alu 1 287 -15 362 283 125 87 chr12 40440596 40440700 -103841789 + HAL1 LINE L1 1114 1213 -1294 1667 140 0 67 chr12 40440700 40441028 -103841461 + AluSg SINE Alu 5 310 0 362 283 125 87 chr12 40441028 40441225 -103841264 + HAL1 LINE L1 1213 1377 -1130 283 283 13 50 chr12 40441425 40441658 -103840831 + CT-rich Low_complexity Low_complexity 1 224 0 612 186 154 32 chr12 40441885 40442152 -103840337 - GSATX Satellite centromeric -21 299 1 674 143 25 8 chr12 40442660 40442779 -103839710 - 5S rRNA rRNA 0 121 1 255 79 0 0 chr12 40443571 40443609 -103838880 + (CA)n Simple_repeat Simple_repeat 1 38 0 269 255 7 0 chr12 40443639 40443780 -103838709 + GA-rich Low_complexity Low_complexity 2 143 0 723 104 61 9 chr12 40444596 40444711 -103837778 - 5S rRNA rRNA 0 121 1 15060 186 65 28 chr12 40445094 40448213 -103834276 - L1M1 LINE L1 -4311 3254 19 2762 169 76 6 chr12 40448224 40448764 -103833725 - LTR23-int LTR ERV1 -1975 5562 4985 25 31 0 0 chr12 40448797 40448829 -103833660 + AT_rich Low_complexity Low_complexity 1 32 0 1974 118 0 0 chr12 40449019 40449306 -103833183 + AluSx SINE Alu 18 304 -8 398 213 24 30 chr12 40449364 40449533 -103832956 - LTR23-int LTR ERV1 -3030 2093 1926 1036 190 6 2 chr12 40449701 40453397 -103829092 - ALR/Alpha Satellite centromeric 0 3712 1 1006 165 5 4 chr12 40453410 40454423 -103828066 - ALR/Alpha Satellite centromeric 0 1013 1 1238 166 7 3 chr12 40454523 40467491 -103814998 + ALR/Alpha Satellite centromeric 1 13020 -32 250 118 98 0 chr12 40467644 40467695 -103814794 - LTR49-int LTR ERV1 -3870 2888 2833 312 244 0 39 chr12 40467797 40467875 -103814614 - LTR49-int LTR ERV1 -2885 3446 3372 436 255 0 9 chr12 40467953 40468059 -103814430 - LTR49-int LTR ERV1 -2991 3340 3236 1706 100 0 16 chr12 40468193 40468442 -103814047 - L1PA14 LINE L1 -5 6156 5912 245 94 0 0 chr12 40468443 40468475 -103814014 - L1PA14 LINE L1 -342 5813 5782 2267 101 6 173 chr12 40468475 40468979 -103813510 - LTR66 LTR ERVL 0 610 191 965 118 0 0 chr12 40468996 40469132 -103813357 + AluSx SINE Alu 18 153 -159 945 72 149 111 chr12 40469134 40469254 -103813235 - LTR66 LTR ERVL -422 188 57 389 21 0 0 chr12 40469254 40469302 -103813187 - L1PA3 LINE L1 -3 6152 6105 945 72 149 111 chr12 40469302 40469362 -103813127 - LTR66 LTR ERVL -553 57 1 2960 129 25 4 chr12 40469362 40469842 -103812647 - L1PA14 LINE L1 -375 5786 5297 * 5395 114 11 5 chr12 40469831 40470638 -103811851 - L1PB1 LINE L1 -1 6150 5339 3351 226 4 0 chr12 40470636 40471432 -103811057 + L1PB1 LINE L1 4552 5350 -796 * 9681 196 20 46 chr12 40471427 40472290 -103810199 - L1PB1 LINE L1 -812 5334 4450 254 25 0 0 chr12 40472290 40472330 -103810159 - AluY SINE Alu 0 300 261 9681 196 20 46 chr12 40472330 40473817 -103808672 - L1PB1 LINE L1 -1696 4450 3016 21 0 0 0 chr12 40474128 40474149 -103808340 + AT_rich Low_complexity Low_complexity 1 21 0 222 192 0 0 chr12 40474793 40474845 -103807644 + (CA)n Simple_repeat Simple_repeat 2 53 0 208 273 0 23 chr12 40474994 40475082 -103807407 + L2 LINE L2 1996 2081 -1233 1829 108 78 34 chr12 40476091 40476386 -103806103 - AluY SINE Alu -3 308 1 1398 176 14 0 chr12 40477784 40478063 -103804426 - L1PB4 LINE L1 -260 5896 5614 286 192 68 14 chr12 40478322 40478395 -103804094 + L2 LINE L2 3191 3267 -5 187 289 0 0 chr12 40479150 40479195 -103803294 + L2 LINE L2 3261 3305 -8 222 296 169 0 chr12 40479317 40479388 -103803101 + L2 LINE L2 3190 3272 0 38 39 0 0 chr12 40480404 40480456 -103802033 + AT_rich Low_complexity Low_complexity 1 52 0 536 287 73 20 chr12 40480498 40480926 -103801563 - MLT1H1 LTR MaLR -120 447 1 359 176 0 0 chr12 40481607 40481675 -103800814 - L1PA16 LINE L1 -795 5371 5304 1336 173 32 7 chr12 40481679 40481956 -103800533 + L1PA16 LINE L1 5390 5673 -493 243 233 33 0 chr12 40482125 40482185 -103800304 + GA-rich Low_complexity Low_complexity 4 65 0 24 53 0 0 chr12 40483041 40483079 -103799410 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 40483268 40483289 -103799200 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr12 40483415 40483449 -103799040 + AT_rich Low_complexity Low_complexity 1 34 0 1937 158 38 97 chr12 40483449 40483974 -103798515 + L1PA16 LINE L1 5652 6145 -21 10201 210 103 14 chr12 40483985 40486488 -103796001 + L1M1 LINE L1 17 2741 -4824 691 376 19 24 chr12 40486838 40487428 -103795061 + L1PA13 LINE L1 788 1374 -6200 286 260 21 21 chr12 40487578 40487674 -103794815 + L1PA13 LINE L1 2085 2180 -5401 461 248 0 0 chr12 40487936 40488049 -103794440 + FRAM SINE Alu 63 175 -1 332 331 36 26 chr12 40488062 40488217 -103794272 + MIR3 SINE MIR 31 187 -21 333 371 66 65 chr12 40488306 40488733 -103793756 - L2 LINE L2 -49 3223 2796 2205 83 33 3 chr12 40488753 40489053 -103793436 - AluY SINE Alu -2 309 1 8432 38 27 0 chr12 40489310 40490403 -103792086 + L1P LINE L1 3589 4711 -1435 23 68 0 0 chr12 40490878 40490922 -103791567 + AT_rich Low_complexity Low_complexity 1 44 0 2035 167 96 15 chr12 40491007 40491415 -103791074 - MER65A LTR ERV1 -4 441 1 241 309 31 0 chr12 40491415 40491512 -103790977 - MER81 DNA DNA -6 108 9 1787 150 34 50 chr12 40491512 40491893 -103790596 + THE1C LTR MaLR 1 375 0 682 241 7 28 chr12 40491960 40492105 -103790384 + MER5A DNA MER1_type 1 142 -47 2230 25 2 0 chr12 40492709 40493135 -103789354 - L1P1 LINE L1 -630 5525 5099 10231 43 12 3 chr12 40493135 40495171 -103787318 + L1PA5 LINE L1 4106 6154 0 349 303 147 52 chr12 40495495 40495726 -103786763 + MIR SINE MIR 10 262 0 785 272 7 22 chr12 40496344 40496620 -103785869 - L1PBa LINE L1 -6586 277 6 532 257 106 41 chr12 40496645 40496780 -103785709 + L2 LINE L2 3005 3130 -183 2063 134 39 3 chr12 40496780 40497115 -103785374 + MER7A DNA MER2_type 1 345 -1 532 257 106 41 chr12 40497115 40497224 -103785265 + L2 LINE L2 3130 3265 -48 326 104 42 0 chr12 40498583 40498631 -103783858 + MIR SINE MIR 56 105 -157 364 314 124 29 chr12 40499788 40499998 -103782491 + MIR SINE MIR 1 230 -32 324 313 170 9 chr12 40500824 40500936 -103781553 - L2 LINE L2 -9 3263 3134 860 280 25 13 chr12 40500954 40501190 -103781299 + MIR SINE MIR 14 252 -10 208 336 97 0 chr12 40501341 40501454 -103781035 - L2 LINE L2 -225 3047 2924 301 307 136 7 chr12 40501500 40501640 -103780849 - L2 LINE L2 -458 2856 2699 22 35 0 0 chr12 40502155 40502184 -103780305 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr12 40503464 40503486 -103779003 + AT_rich Low_complexity Low_complexity 1 22 0 633 133 8 23 chr12 40503817 40503945 -103778544 + LTR14B LTR ERVK 483 608 0 2274 165 110 12 chr12 40503977 40504486 -103778003 + L1PBa LINE L1 605 1163 -5700 7659 129 31 8 chr12 40504503 40505921 -103776568 + L1PBa LINE L1 1332 2782 -4081 4706 209 16 3 chr12 40505929 40507074 -103775415 + L1 LINE L1 3842 5000 -1862 10392 61 21 2 chr12 40507174 40508625 -103773864 - L1P LINE L1 -1575 4571 3094 * 16979 89 4 1 chr12 40508605 40511044 -103771445 - L1P LINE L1 -3655 2491 45 4400 245 51 15 chr12 40511144 40511442 -103771047 + L1M1 LINE L1 2819 3105 -4460 1717 29 0 5 chr12 40511442 40511652 -103770837 + L1PA3 LINE L1 5944 6152 -3 4400 245 51 15 chr12 40511652 40513700 -103768789 + L1M1 LINE L1 3105 5310 -2255 2100 140 7 3 chr12 40513700 40514000 -103768489 + AluSx SINE Alu 1 304 -8 228 35 0 0 chr12 40514000 40514029 -103768460 + (CACAA)n Simple_repeat Simple_repeat 4 32 0 4400 245 51 15 chr12 40514036 40514397 -103768092 + L1M1 LINE L1 5310 5657 -1908 1984 196 38 17 chr12 40514412 40514831 -103767658 + MSTA LTR MaLR 1 428 0 5674 213 110 58 chr12 40514833 40516333 -103766156 + MSTA-int LTR MaLR 3 1651 0 1537 239 62 10 chr12 40516335 40516740 -103765749 + MSTA LTR MaLR 3 428 0 3117 217 24 20 chr12 40516740 40517631 -103764858 + L1M1 LINE L1 5668 6561 -1004 708 330 171 31 chr12 40518015 40518534 -103763955 + L2 LINE L2 2347 2938 -376 476 292 152 8 chr12 40518602 40518866 -103763623 + L2 LINE L2 3012 3313 0 271 355 73 8 chr12 40521062 40521186 -103761303 - MIR SINE MIR -57 151 20 24 0 0 0 chr12 40522497 40522521 -103759968 + AT_rich Low_complexity Low_complexity 1 24 0 1676 211 0 3 chr12 40523744 40524028 -103758461 - AluJb SINE Alu -29 283 1 465 235 189 8 chr12 40524029 40524161 -103758328 - MER5A DNA MER1_type -6 183 28 676 247 16 52 chr12 40524174 40524368 -103758121 - MER5A DNA MER1_type 0 189 3 419 250 0 0 chr12 40524814 40524890 -103757599 - AluJ/FLAM SINE Alu -234 78 3 444 242 189 8 chr12 40524893 40525025 -103757464 - MER5A DNA MER1_type -6 183 28 658 258 16 52 chr12 40525038 40525232 -103757257 - MER5A DNA MER1_type 0 189 3 236 256 267 0 chr12 40525548 40525638 -103756851 - MIR SINE MIR -67 141 28 374 367 67 24 chr12 40526177 40526548 -103755941 + L2 LINE L2 2249 2635 -679 23 0 0 0 chr12 40526839 40526862 -103755627 + AT_rich Low_complexity Low_complexity 1 23 0 2384 53 33 3 chr12 40528434 40528734 -103753755 + AluY SINE Alu 1 309 -2 306 374 42 60 chr12 40528754 40529184 -103753305 + L2 LINE L2 2796 3226 -46 399 355 14 0 chr12 40529270 40529411 -103753078 - MIR3 SINE MIR -21 187 45 1556 220 7 0 chr12 40529438 40529747 -103752742 - AluJo SINE Alu -1 311 1 329 363 51 25 chr12 40532275 40532432 -103750057 + MIR3 SINE MIR 20 180 -28 442 228 0 0 chr12 40532530 40532622 -103749867 - L2 LINE L2 0 3313 3222 1025 368 17 20 chr12 40533091 40533680 -103748809 + L1PA13 LINE L1 788 1374 -6200 363 238 30 20 chr12 40533830 40533931 -103748558 + L1PA13 LINE L1 2085 2186 -5395 818 311 6 22 chr12 40534175 40534497 -103747992 + L1PA13 LINE L1 2191 2507 -5074 2134 134 8 52 chr12 40534501 40534882 -103747607 - THE1B LTR MaLR 0 364 1 10960 99 12 38 chr12 40534884 40536504 -103745985 - THE1B-int LTR MaLR -2 1578 1 1346 193 14 41 chr12 40536504 40536794 -103745695 - THE1B LTR MaLR 0 364 83 656 113 28 0 chr12 40536894 40537000 -103745489 - THE1B-int LTR MaLR -1471 109 1 2096 151 8 30 chr12 40537000 40537372 -103745117 - THE1B LTR MaLR 0 364 1 4106 259 58 40 chr12 40537380 40539901 -103742588 + L1PA13 LINE L1 2529 5072 -2512 1112 217 91 78 chr12 40540178 40540639 -103741850 - MLT1C LTR MaLR 0 467 1 23 0 0 0 chr12 40540691 40540714 -103741775 + AT_rich Low_complexity Low_complexity 1 23 0 3339 163 18 20 chr12 40540714 40541372 -103741117 - L1MA7 LINE L1 -16 6275 5619 2193 108 3 3 chr12 40542253 40542559 -103739930 - AluSq SINE Alu -7 306 1 1217 93 137 10 chr12 40544292 40544396 -103738093 - MER30 DNA MER1_type 0 230 141 395 0 0 39 chr12 40544396 40544448 -103738041 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 1217 93 137 10 chr12 40544448 40544547 -103737942 - MER30 DNA MER1_type -89 141 1 24 67 0 0 chr12 40544748 40544793 -103737696 + AT_rich Low_complexity Low_complexity 1 45 0 329 206 11 0 chr12 40545249 40545341 -103737148 + (TA)n Simple_repeat Simple_repeat 1 93 0 619 153 29 58 chr12 40545342 40545479 -103737010 - FLAM_C SINE Alu -5 138 6 534 319 91 26 chr12 40545617 40545849 -103736640 - MIR SINE MIR -8 254 8 270 364 120 26 chr12 40545888 40546196 -103736293 + L3 LINE CR1 993 1329 -248 651 250 158 10 chr12 40547088 40547284 -103735205 - MIR SINE MIR -32 230 6 3437 73 5 2 chr12 40547969 40548410 -103734079 - SVA Other Other -4 1382 941 1048 231 4 8 chr12 40548510 40548765 -103733724 + L1 LINE L1 3847 4100 -2046 280 269 173 0 chr12 40548967 40549071 -103733418 + MIR SINE MIR 68 189 -73 259 308 67 29 chr12 40549499 40549603 -103732886 + MIR SINE MIR 49 144 -64 1722 229 56 0 chr12 40550556 40550932 -103731557 - MLT1D LTR MaLR -122 383 1 320 366 91 11 chr12 40550943 40551129 -103731360 + MIR SINE MIR 30 230 -32 21 0 0 0 chr12 40551217 40551238 -103731251 + AT_rich Low_complexity Low_complexity 1 21 0 258 81 0 0 chr12 40551408 40551445 -103731044 + (TG)n Simple_repeat Simple_repeat 2 38 0 1566 179 36 4 chr12 40551452 40551726 -103730763 - AluJb SINE Alu -29 283 1 286 258 61 61 chr12 40551932 40552017 -103730472 - MER3 DNA MER1_type 0 209 125 1478 121 5 0 chr12 40552017 40552224 -103730265 + AluSg/x SINE Alu 84 291 -21 286 258 61 61 chr12 40552224 40552336 -103730153 - MER3 DNA MER1_type -83 126 12 227 267 256 0 chr12 40552419 40552505 -103729984 + L2 LINE L2 3205 3312 -1 1273 39 0 0 chr12 40553702 40553858 -103728631 + L1PA4 LINE L1 5996 6151 -4 26 0 0 0 chr12 40554273 40554299 -103728190 + AT_rich Low_complexity Low_complexity 1 26 0 293 335 50 41 chr12 40555783 40556004 -103726485 - MLT1I LTR MaLR -55 354 132 48 53 0 0 chr12 40556030 40556106 -103726383 + AT_rich Low_complexity Low_complexity 1 76 0 307 145 16 16 chr12 40556492 40556554 -103725935 + L1ME1 LINE L1 6102 6163 -3 183 204 0 0 chr12 40556737 40556781 -103725708 + A-rich Low_complexity Low_complexity 1 44 0 28 0 0 0 chr12 40557249 40557277 -103725212 + AT_rich Low_complexity Low_complexity 1 28 0 1037 225 84 3 chr12 40557388 40557672 -103724817 - MER5C DNA MER1_type -6 318 12 490 114 0 0 chr12 40557878 40557957 -103724532 - L1PA14 LINE L1 -5 6156 6078 918 280 47 9 chr12 40557973 40558316 -103724173 + L1ME LINE L1 5317 5672 -498 342 0 0 0 chr12 40558328 40558366 -103724123 + (CA)n Simple_repeat Simple_repeat 2 39 0 963 282 32 66 chr12 40558367 40558870 -103723619 - L1MCc LINE L1 -5287 1136 651 22 56 0 0 chr12 40559460 40559496 -103722993 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr12 40559951 40559979 -103722510 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr12 40560274 40560302 -103722187 + AT_rich Low_complexity Low_complexity 1 28 0 255 273 40 20 chr12 40560627 40560726 -103721763 - MLT1I LTR MaLR -3 406 306 208 242 94 30 chr12 40561213 40561314 -103721175 - MER5B DNA MER1_type -73 105 12 210 342 59 53 chr12 40561468 40561620 -103720869 + MIR3 SINE MIR 53 205 -3 204 40 0 0 chr12 40562700 40562725 -103719764 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 236 336 9 0 chr12 40566555 40566668 -103715821 + (CA)n Simple_repeat Simple_repeat 2 115 0 40824 54 6 3 chr12 40567425 40573426 -103709063 + L1PA4 LINE L1 121 6141 -14 285 281 117 0 chr12 40574006 40574134 -103708355 - MIR SINE MIR 0 262 120 189 0 0 0 chr12 40575356 40575377 -103707112 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 28 71 0 0 chr12 40576160 40576216 -103706273 + AT_rich Low_complexity Low_complexity 1 56 0 560 189 76 185 chr12 40576408 40576760 -103705729 - LTR28 LTR ERV1 -101 906 1 726 308 161 9 chr12 40577991 40578332 -103704157 - MLT1J LTR MaLR -30 481 89 22 0 0 0 chr12 40578449 40578471 -103704018 + AT_rich Low_complexity Low_complexity 1 22 0 1335 249 71 51 chr12 40579207 40579697 -103702792 - MLT1D LTR MaLR 0 505 6 1410 195 104 36 chr12 40581909 40582318 -103700171 - MSTD LTR MaLR 0 396 1 1275 223 42 72 chr12 40582545 40582931 -103699558 - MLT1A2 LTR MaLR 0 374 1 424 260 75 55 chr12 40584402 40584602 -103697887 + L2 LINE L2 3109 3312 -1 1873 247 67 49 chr12 40584843 40585458 -103697031 - MLT1E2 LTR MaLR 0 626 1 23 33 0 0 chr12 40585541 40585571 -103696918 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr12 40585930 40585966 -103696523 + AT_rich Low_complexity Low_complexity 1 36 0 1871 270 107 9 chr12 40586971 40587731 -103694758 - L1ME3A LINE L1 -31 6139 5306 1992 211 43 64 chr12 40588398 40588912 -103693577 + MLT2B3 LTR ERVL 1 413 -40 223 191 29 0 chr12 40588912 40588980 -103693509 + (TA)n Simple_repeat Simple_repeat 2 71 0 358 89 0 78 chr12 40588993 40589086 -103693403 + MLT2B3 LTR ERVL 441 554 0 932 263 93 17 chr12 40589263 40589563 -103692926 + LTR50 LTR ERVL 1 323 -472 851 259 99 14 chr12 40589605 40589957 -103692532 + LTR50 LTR ERVL 414 795 0 335 113 14 0 chr12 40591355 40591426 -103691063 + (TG)n Simple_repeat Simple_repeat 1 72 0 316 220 0 0 chr12 40591439 40591489 -103691000 - MER75 DNA T2_type -443 71 22 550 268 64 0 chr12 40591625 40591782 -103690707 + MIR SINE MIR 94 260 -2 21 0 0 0 chr12 40593160 40593181 -103689308 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 40593360 40593396 -103689093 + AT_rich Low_complexity Low_complexity 1 36 0 3255 118 12 16 chr12 40593396 40593912 -103688577 - MER75 DNA T2_type 0 514 1 2475 194 38 19 chr12 40594117 40594643 -103687846 - MER89 LTR ERV1 -23 536 1 391 270 171 25 chr12 40595254 40595528 -103686961 + L2 LINE L2 1938 2251 -1063 2079 189 50 23 chr12 40596599 40597039 -103685450 + MSTB2 LTR MaLR 1 452 -5 1094 67 0 0 chr12 40597207 40597341 -103685148 + AluY SINE Alu 168 301 -10 2035 141 30 49 chr12 40597869 40598239 -103684250 + THE1B LTR MaLR 2 364 0 840 269 58 10 chr12 40598316 40598628 -103683861 - MER46C DNA MER2_type 0 338 12 523 275 36 7 chr12 40598632 40598770 -103683719 - MIR SINE MIR -120 142 1 271 352 116 37 chr12 40598890 40599245 -103683244 - L3 LINE CR1 -199 1378 996 2132 185 42 5 chr12 40599257 40599663 -103682826 - MSTA LTR MaLR -7 421 1 201 394 0 0 chr12 40599671 40599742 -103682747 - L3 LINE CR1 -597 980 910 1367 204 0 29 chr12 40599759 40600039 -103682450 + L1M3e LINE L1 1 272 -6758 2259 242 82 49 chr12 40600039 40601822 -103680667 + L1M3e LINE L1 1028 2894 -4213 1857 110 4 4 chr12 40601816 40602088 -103680401 - THE1B-int LTR MaLR -1308 272 1 * 2406 79 54 23 chr12 40602088 40602441 -103680048 - THE1B LTR MaLR 0 364 1 557 156 11 6 chr12 40602607 40602707 -103679782 + MER5A DNA MER1_type 82 189 0 4623 142 3 0 chr12 40602815 40603520 -103678969 + L1P LINE L1 3 709 -5437 3443 119 2 6 chr12 40604037 40604551 -103677938 - MER75 DNA T2_type -2 512 1 327 266 180 30 chr12 40604672 40604807 -103677682 - MIR3 SINE MIR -14 194 45 6098 194 26 27 chr12 40604931 40604981 -103677508 - L1PA16 LINE L1 -9 6157 6108 1468 224 0 19 chr12 40604981 40605289 -103677200 - AluJb SINE Alu -8 304 3 6098 194 26 27 chr12 40605289 40607059 -103675430 - L1PA16 LINE L1 -58 6108 4338 1246 230 10 32 chr12 40607059 40607368 -103675121 + AluJb SINE Alu 1 302 -10 6098 194 26 27 chr12 40607368 40608010 -103674479 - L1PA16 LINE L1 -1828 4338 3697 1809 61 4 0 chr12 40608083 40608314 -103674175 - MER75 DNA T2_type -2 512 281 1268 204 54 36 chr12 40608330 40608664 -103673825 - L1PA16 LINE L1 -2486 3660 3321 232 279 25 13 chr12 40609110 40609189 -103673300 + LTR33A LTR ERVL 444 523 0 838 303 39 21 chr12 40610156 40610486 -103672003 + LTR16B LTR ERVL 125 460 -4 894 338 43 36 chr12 40610526 40611268 -103671221 + HERV16 LTR ERVL 61 834 -4162 5052 75 11 40 chr12 40611268 40611976 -103670513 + LTR12 LTR ERV1 1 688 0 894 338 43 36 chr12 40611976 40612202 -103670287 + HERV16 LTR ERVL 834 1057 -3939 272 67 0 0 chr12 40612494 40612539 -103669950 + AluSc SINE Alu 255 299 0 3170 214 124 34 chr12 40612751 40613727 -103668762 + L1M1 LINE L1 1 1064 -6145 * 7770 160 34 36 chr12 40613720 40615719 -103666770 + L1M1 LINE L1 4678 6680 -685 1038 224 28 86 chr12 40616153 40616550 -103665939 + MLT1A2 LTR MaLR 1 374 0 782 214 7 87 chr12 40616881 40617178 -103665311 + MLT1B LTR MaLR 104 386 0 551 272 5 5 chr12 40617668 40617852 -103664637 + L1MC/D LINE L1 5188 5371 -775 * 6658 91 8 0 chr12 40617848 40618771 -103663718 - L1PA7 LINE L1 -1116 5030 4101 6407 74 17 6 chr12 40618773 40619862 -103662627 + L1PA7 LINE L1 5041 6141 -13 534 77 0 0 chr12 40619866 40619944 -103662545 + L1MC/D LINE L1 5354 5431 -902 835 288 64 47 chr12 40620155 40620624 -103661865 - LTR33 LTR ERVL -3 518 42 2224 111 0 3 chr12 40620746 40621043 -103661446 + AluY SINE Alu 1 296 -15 619 190 0 11 chr12 40621269 40621448 -103661041 + GA-rich Low_complexity Low_complexity 1 177 0 27 0 0 0 chr12 40622511 40622538 -103659951 + AT_rich Low_complexity Low_complexity 1 27 0 274 344 38 75 chr12 40623147 40623333 -103659156 - MIR3 SINE MIR -14 194 16 339 25 0 0 chr12 40623780 40623820 -103658669 + (CA)n Simple_repeat Simple_repeat 2 41 0 291 210 48 0 chr12 40623820 40623882 -103658607 - HERVL68 LTR ERVL -338 2699 2635 620 226 170 26 chr12 40623955 40624185 -103658304 - HERVL68 LTR ERVL -484 2553 2291 284 285 139 32 chr12 40624700 40624858 -103657631 - MIR SINE MIR -40 222 48 229 332 35 73 chr12 40625749 40626008 -103656481 - MIR SINE MIR 0 262 14 663 244 99 23 chr12 40626147 40626368 -103656121 + L1ME1 LINE L1 36 273 -6123 1335 257 82 6 chr12 40626407 40626905 -103655584 + L1ME1 LINE L1 4707 5242 -973 595 116 0 0 chr12 40626917 40627003 -103655486 - HY3 scRNA scRNA -3 98 13 2630 231 67 38 chr12 40627042 40627981 -103654508 + L1ME1 LINE L1 5284 6231 -4 7606 23 5 0 chr12 40628006 40628875 -103653614 - L1P LINE L1 -1168 4978 4106 * 7615 32 1 0 chr12 40628874 40629958 -103652531 + L1PA3 LINE L1 5098 6182 0 21 57 0 0 chr12 40630411 40630446 -103652043 + AT_rich Low_complexity Low_complexity 1 35 0 1655 209 69 3 chr12 40631590 40631799 -103650690 - MLT1B LTR MaLR 0 390 147 1341 173 85 35 chr12 40631799 40631974 -103650515 - AluJo SINE Alu -15 297 101 441 0 0 0 chr12 40631974 40632023 -103650466 + (TG)n Simple_repeat Simple_repeat 2 50 0 1341 173 85 35 chr12 40632023 40632130 -103650359 - AluJo SINE Alu -211 101 1 1655 209 69 3 chr12 40632130 40632268 -103650221 - MLT1B LTR MaLR -243 147 20 1148 137 19 16 chr12 40632268 40632513 -103649976 + THE1C LTR MaLR 1 361 -14 372 183 15 131 chr12 40632613 40632750 -103649739 + MIR SINE MIR 126 246 -16 495 169 11 22 chr12 40634322 40634411 -103648078 + MLT1H LTR MaLR 411 498 -51 21 0 0 0 chr12 40635179 40635200 -103647289 + AT_rich Low_complexity Low_complexity 1 21 0 50 95 0 0 chr12 40635411 40635559 -103646930 + AT_rich Low_complexity Low_complexity 1 148 0 612 82 0 0 chr12 40635665 40635750 -103646739 + Alu SINE Alu 225 309 -3 233 243 95 0 chr12 40635755 40635829 -103646660 - L1MC5 LINE L1 -404 7557 7477 23 0 0 0 chr12 40635974 40635997 -103646492 + AT_rich Low_complexity Low_complexity 1 23 0 294 336 143 0 chr12 40636035 40636154 -103646335 - L2 LINE L2 0 3272 3137 360 225 12 25 chr12 40637413 40637493 -103644996 - MIR SINE MIR -107 101 23 2417 57 0 27 chr12 40638606 40638907 -103643582 - AluY SINE Alu -18 293 1 2277 89 7 0 chr12 40638921 40639213 -103643276 - AluSp SINE Alu -19 294 1 366 23 0 0 chr12 40640206 40640249 -103642240 + (CA)n Simple_repeat Simple_repeat 2 44 0 310 283 22 43 chr12 40640623 40640761 -103641728 + L2 LINE L2 417 551 -2763 486 297 40 7 chr12 40640782 40640987 -103641502 + MIR SINE MIR 2 254 -8 2632 126 3 8 chr12 40641361 40641727 -103640762 + THE1B LTR MaLR 1 364 0 362 322 89 20 chr12 40641892 40642281 -103640208 + L1ME LINE L1 16 468 -5602 10258 44 2 128 chr12 40642690 40644262 -103638227 + SVA Other Other 9 1382 -4 985 292 19 39 chr12 40644624 40645035 -103637454 + L1 LINE L1 4857 5259 -887 1656 157 87 31 chr12 40645041 40645361 -103637128 + THE1C LTR MaLR 1 365 -63 2126 97 7 4 chr12 40645361 40645640 -103636849 + AluSg1 SINE Alu 2 281 -28 1656 157 87 31 chr12 40645640 40645708 -103636781 + THE1C LTR MaLR 365 428 0 663 100 118 9 chr12 40645736 40645846 -103636643 + L1MA2 LINE L1 6178 6299 -5 22 0 0 0 chr12 40645846 40645868 -103636621 + AT_rich Low_complexity Low_complexity 1 22 0 499 174 207 0 chr12 40645872 40645993 -103636496 - MER4B LTR ERV1 -462 148 3 1870 149 3 0 chr12 40646323 40646605 -103635884 + AluSx SINE Alu 3 285 -27 30 27 0 0 chr12 40646606 40646643 -103635846 + AT_rich Low_complexity Low_complexity 1 37 0 686 316 0 0 chr12 40647249 40647423 -103635066 + MER41D LTR ERV1 384 557 0 11798 303 50 31 chr12 40648368 40650324 -103632165 + PRIMA41-int LTR ERV1 1269 3187 -4569 2375 76 0 35 chr12 40650324 40650640 -103631849 - AluY SINE Alu -6 305 1 11798 303 50 31 chr12 40650640 40651897 -103630592 + PRIMA41-int LTR ERV1 3187 4419 -3337 2713 107 5 35 chr12 40651897 40652106 -103630383 - THE1B LTR MaLR 0 364 168 1925 115 4 0 chr12 40652106 40652390 -103630099 + AluSx SINE Alu 23 307 0 2713 107 5 35 chr12 40652390 40652554 -103629935 - THE1B LTR MaLR -196 168 1 11798 303 50 31 chr12 40652554 40654119 -103628370 + PRIMA41-int LTR ERV1 4419 6138 -1618 213 196 0 0 chr12 40654427 40654483 -103628006 + G-rich Low_complexity Low_complexity 4 59 0 352 297 22 22 chr12 40757483 40757621 -103524868 + L1ME1 LINE L1 138 275 -6121 952 154 0 0 chr12 40757624 40757767 -103524722 + HERVL LTR ERVL 1501 1643 -4121 837 243 24 67 chr12 40757770 40758143 -103524346 - MER57A LTR ERV1 -1 402 67 1138 196 100 0 chr12 40758213 40758433 -103524056 + HERVL LTR ERVL 3671 3912 -1742 2947 223 44 52 chr12 40758433 40758928 -103523561 + L1ME1 LINE L1 4249 4747 -1488 2216 102 0 3 chr12 40758928 40759222 -103523267 - AluSg1 SINE Alu -16 293 1 2947 223 44 52 chr12 40759222 40760548 -103521941 + L1ME1 LINE L1 4747 6043 -192 1791 302 46 43 chr12 40760647 40761515 -103520974 + HAL1 LINE L1 14 884 -1623 278 295 64 85 chr12 40761666 40761947 -103520542 - HAL1 LINE L1 -2125 382 108 727 277 34 10 chr12 40762266 40762472 -103520017 - MIR SINE MIR -9 253 43 253 282 5 146 chr12 40762505 40762711 -103519778 - MER5B DNA MER1_type 0 178 2 219 365 156 12 chr12 40762943 40763110 -103519379 + MIR SINE MIR 28 218 -44 870 239 109 10 chr12 40763226 40763519 -103518970 - HsTC2 DNA Tc2 -30 1868 1547 210 125 14 83 chr12 40763521 40763593 -103518896 + (TTAA)n Simple_repeat Simple_repeat 2 68 0 318 313 18 0 chr12 40763703 40763815 -103518674 - HsTC2 DNA Tc2 -1781 117 4 2670 153 2 2 chr12 40765350 40765776 -103516713 - MSTC LTR MaLR -2 426 1 208 327 0 0 chr12 40765928 40765983 -103516506 - MIR SINE MIR -138 70 16 2106 105 7 7 chr12 40766035 40766351 -103516138 - AluSp SINE Alu 0 316 1 817 168 0 29 chr12 40766979 40767116 -103515373 - FLAM_C SINE Alu 0 133 1 4270 16 2 0 chr12 40767307 40767798 -103514691 - L1PA2 LINE L1 -1 6154 5663 745 238 0 18 chr12 40769298 40769466 -103513023 + MER31B LTR ERV1 1 165 -301 21425 121 11 10 chr12 40769466 40773380 -103509109 + L1PA8A LINE L1 1889 5802 -329 24 0 0 0 chr12 40773559 40773583 -103508906 + AT_rich Low_complexity Low_complexity 1 24 0 1181 298 177 33 chr12 40773999 40774673 -103507816 - L3 LINE CR1 -4 1573 803 737 271 157 34 chr12 40774693 40775106 -103507383 + LTR16B LTR ERVL 1 464 0 293 352 41 25 chr12 40775110 40775306 -103507183 + HERV16 LTR ERVL 5 203 -4793 2772 319 78 31 chr12 40775378 40776488 -103506001 + HERV16 LTR ERVL 506 1562 -3535 207 0 0 0 chr12 40776488 40776511 -103505978 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2772 319 78 31 chr12 40776511 40777893 -103504596 + HERV16 LTR ERVL 1562 3197 -1900 259 298 35 48 chr12 40777947 40778175 -103504314 + HERV16 LTR ERVL 3569 3793 -1203 1244 220 51 71 chr12 40778177 40778531 -103503958 + MLT1A1 LTR MaLR 7 353 -12 238 222 14 42 chr12 40778818 40778890 -103503599 - HAL1b LINE L1 -925 423 354 2705 26 0 0 chr12 40778899 40779205 -103503284 + AluYa5 SINE Alu 1 306 -5 21 36 0 0 chr12 40779376 40779404 -103503085 + AT_rich Low_complexity Low_complexity 1 28 0 492 341 40 14 chr12 40779948 40780171 -103502318 - MLT1J LTR MaLR -262 249 21 200 194 48 0 chr12 40781114 40781176 -103501313 + (CTATT)n Simple_repeat Simple_repeat 4 68 0 519 299 66 49 chr12 40782817 40783061 -103499428 + MIR SINE MIR 15 262 0 23 0 0 0 chr12 40784157 40784180 -103498309 + AT_rich Low_complexity Low_complexity 1 23 0 2171 91 30 10 chr12 40784354 40784652 -103497837 - AluSg SINE Alu -6 304 1 28 0 0 0 chr12 40785739 40785767 -103496722 + AT_rich Low_complexity Low_complexity 1 28 0 377 339 61 6 chr12 40786735 40786915 -103495574 - L2 LINE L2 0 3313 3124 1650 286 80 10 chr12 40786920 40787519 -103494970 + L2 LINE L2 1430 2070 -1244 1156 294 51 40 chr12 40788143 40788596 -103493893 - MLT1J LTR MaLR -35 476 19 261 221 0 39 chr12 40788707 40788784 -103493705 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 267 225 50 0 chr12 40789849 40789969 -103492520 + (TA)n Simple_repeat Simple_repeat 1 126 0 3886 189 139 22 chr12 40790900 40791886 -103490603 + L1MB1 LINE L1 4134 5234 -912 1265 171 60 12 chr12 40791987 40792239 -103490250 + L1MB1 LINE L1 5748 6011 -157 2297 109 12 9 chr12 40792241 40792580 -103489909 + THE1A LTR MaLR 1 340 -15 814 133 67 0 chr12 40792583 40792733 -103489756 + L1MB1 LINE L1 6008 6167 -1 21 36 0 0 chr12 40792733 40792761 -103489728 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr12 40793989 40794028 -103488461 + (TG)n Simple_repeat Simple_repeat 2 40 0 802 153 107 0 chr12 40794887 40795037 -103487452 + L1M4c LINE L1 1599 1764 -4620 378 0 0 0 chr12 40795133 40795175 -103487314 + (TG)n Simple_repeat Simple_repeat 2 43 0 232 268 0 28 chr12 40795176 40795247 -103487242 + GA-rich Low_complexity Low_complexity 1 69 0 518 132 0 11 chr12 40795523 40795614 -103486875 + L1M4c LINE L1 1748 1837 -4547 225 0 0 0 chr12 40795616 40795641 -103486848 + (TTA)n Simple_repeat Simple_repeat 1 25 0 846 283 178 2 chr12 40795750 40796189 -103486300 + HAL1 LINE L1 1402 1917 -590 366 282 126 16 chr12 40796632 40796887 -103485602 + HAL1 LINE L1 2109 2391 -116 1938 163 28 93 chr12 40796986 40797382 -103485107 + L1MB7 LINE L1 5706 6126 -52 1975 133 59 31 chr12 40797382 40797736 -103484753 + THE1B LTR MaLR 1 364 0 11374 107 2 4 chr12 40797736 40799320 -103483169 + THE1B-int LTR MaLR 1 1580 0 2054 125 62 28 chr12 40799320 40799672 -103482817 + THE1B LTR MaLR 1 364 0 1938 163 28 93 chr12 40799672 40799769 -103482720 + L1MB7 LINE L1 6123 6169 -9 205 214 101 45 chr12 40800367 40800456 -103482033 - L2 LINE L2 -917 2397 2304 208 354 0 25 chr12 40800753 40800832 -103481657 - MIR SINE MIR -67 141 65 262 301 97 19 chr12 40800990 40801093 -103481396 + MIR3 SINE MIR 83 193 -15 287 279 115 71 chr12 40802592 40802775 -103479714 - L2 LINE L2 0 3272 3082 341 322 147 23 chr12 40802811 40802988 -103479501 + MIR SINE MIR 39 237 -25 216 97 0 0 chr12 40803031 40803062 -103479427 + (TC)n Simple_repeat Simple_repeat 1 31 0 236 342 60 0 chr12 40803757 40803874 -103478615 + L2 LINE L2 3169 3292 -21 202 351 0 0 chr12 40804033 40804090 -103478399 + L2 LINE L2 3253 3309 -4 285 298 274 33 chr12 40804724 40805053 -103477436 - L2 LINE L2 0 3313 2906 224 211 55 9 chr12 40805539 40805648 -103476841 + (TA)n Simple_repeat Simple_repeat 2 115 0 333 47 0 0 chr12 40805698 40805741 -103476748 + (CA)n Simple_repeat Simple_repeat 2 44 0 298 310 116 103 chr12 40805821 40806150 -103476339 + L2 LINE L2 2936 3268 -4 225 345 103 14 chr12 40807557 40807702 -103474787 - MIR SINE MIR 0 262 105 194 240 0 40 chr12 40807707 40807757 -103474732 + MIR SINE MIR 197 244 -18 681 231 46 136 chr12 40808072 40808461 -103474028 + L2 LINE L2 2440 2793 -521 707 246 52 129 chr12 40808461 40808966 -103473523 - MLT1H LTR MaLR 0 549 84 376 299 138 51 chr12 40808998 40809353 -103473136 + L2 LINE L2 2804 3189 -124 1668 130 0 0 chr12 40809374 40809621 -103472868 - L1PA8A LINE L1 -4 6127 5881 57 28 0 0 chr12 40809793 40809864 -103472625 + AT_rich Low_complexity Low_complexity 1 71 0 335 306 48 93 chr12 40809875 40810248 -103472241 + L2 LINE L2 2698 3050 -263 25 51 0 0 chr12 40810278 40810317 -103472172 + AT_rich Low_complexity Low_complexity 1 39 0 211 296 136 0 chr12 40811234 40811315 -103471174 + L2 LINE L2 3168 3259 -13 2111 97 0 24 chr12 40812349 40812661 -103469828 + AluSg SINE Alu 1 305 0 440 324 74 0 chr12 40813841 40814017 -103468472 + MIR SINE MIR 66 254 -8 551 264 75 51 chr12 40814459 40814754 -103467735 - L1ME LINE L1 -335 5786 5485 249 342 158 43 chr12 40814761 40815039 -103467450 - L2 LINE L2 -2 3311 3002 286 247 12 0 chr12 40815642 40815723 -103466766 - HAL1 LINE L1 -867 1640 1559 185 314 121 48 chr12 40815766 40815973 -103466516 - MIR SINE MIR -1 261 40 226 304 80 24 chr12 40816170 40816459 -103466030 - L1MEd LINE L1 -4894 1225 921 1177 149 62 12 chr12 40816501 40816742 -103465747 - L1MD3 LINE L1 0 7995 7743 399 21 0 0 chr12 40817576 40817624 -103464865 + (TG)n Simple_repeat Simple_repeat 2 49 0 219 290 0 0 chr12 40818113 40818175 -103464314 - L2 LINE L2 0 3313 3252 257 140 80 0 chr12 40818478 40818528 -103463961 - MADE1 DNA Mariner -26 54 1 21 0 0 0 chr12 40818627 40818648 -103463841 + AT_rich Low_complexity Low_complexity 1 21 0 777 163 31 0 chr12 40819526 40819655 -103462834 + FRAM SINE Alu 28 160 -16 4643 153 9 18 chr12 40819784 40821192 -103461297 - L1PA16 LINE L1 -1 6165 4779 229 250 19 0 chr12 40821213 40821265 -103461224 - MER66A LTR ERV1 -140 338 286 320 114 0 0 chr12 40821265 40821309 -103461180 - L1PA16 LINE L1 -1373 4773 4730 300 265 20 41 chr12 40822224 40822322 -103460167 + HERV16 LTR ERVL 4296 4391 -605 1136 282 81 18 chr12 40823004 40823387 -103459102 + LTR16B LTR ERVL 15 421 -43 377 182 0 0 chr12 40823420 40823486 -103459003 - MADE1 DNA Mariner -14 66 1 290 350 95 20 chr12 40823620 40823820 -103458669 - L3 LINE CR1 -1023 554 340 279 0 0 0 chr12 40823882 40823913 -103458576 + (TA)n Simple_repeat Simple_repeat 2 32 0 29 0 0 0 chr12 40824144 40824173 -103458316 + AT_rich Low_complexity Low_complexity 1 29 0 1398 301 42 4 chr12 40824174 40824746 -103457743 - L1MC4a LINE L1 -545 5638 5269 324 364 98 16 chr12 40824810 40825186 -103457303 - L1MC4a LINE L1 -982 5164 4758 17227 164 37 29 chr12 40825209 40829146 -103453343 + L1MA1 LINE L1 16 3994 -3571 2266 115 0 0 chr12 40829146 40829451 -103453038 + AluSg SINE Alu 4 308 -2 17227 164 37 29 chr12 40829451 40829632 -103452857 + L1MA1 LINE L1 3994 4172 -3393 2457 18 0 3 chr12 40829635 40829920 -103452569 - L1PA3 LINE L1 0 6155 5872 5609 16 5 0 chr12 40829943 40830710 -103451779 + L1PA3 LINE L1 5123 5898 -257 12308 156 32 9 chr12 40830718 40834189 -103448300 + L1MA1 LINE L1 4177 7721 0 366 291 106 57 chr12 40834237 40834749 -103447740 - L1M4 LINE L1 -1438 4708 4172 21 0 0 0 chr12 40834909 40834930 -103447559 + AT_rich Low_complexity Low_complexity 1 21 0 2082 102 0 11 chr12 40835029 40835360 -103447129 - AluSc SINE Alu 0 328 1 471 244 116 86 chr12 40835803 40836339 -103446150 - L1M4 LINE L1 -2919 3227 2676 314 331 105 6 chr12 40836574 40836755 -103445734 - L1M4 LINE L1 -3613 2533 2335 6214 88 8 4 chr12 40836803 40837792 -103444697 - L1PA10 LINE L1 -2 6166 5169 529 140 0 0 chr12 40837965 40838058 -103444431 - L1MB5 LINE L1 -1 6173 6081 907 20 0 0 chr12 40838263 40838365 -103444124 - AluY SINE Alu -208 102 1 4926 234 98 19 chr12 40838366 40840178 -103442311 + L1M4c LINE L1 1925 3593 -2789 1655 186 99 14 chr12 40840178 40840543 -103441946 - MSTD LTR MaLR 0 396 1 4926 234 98 19 chr12 40840543 40841100 -103441389 + L1M4c LINE L1 3593 4510 -1872 2117 136 0 13 chr12 40841100 40841416 -103441073 + AluSx SINE Alu 1 312 0 4926 234 98 19 chr12 40841416 40841498 -103440991 + L1M4c LINE L1 4510 4584 -1798 426 194 70 23 chr12 40841484 40841613 -103440876 + L1M4c LINE L1 2759 2893 -3489 * 416 198 9 0 chr12 40841614 40841720 -103440769 + L1M4c LINE L1 4581 4687 -1695 2714 204 42 4 chr12 40841720 40841800 -103440689 - MER44D DNA MER2_type -1882 605 529 288 0 0 0 chr12 40841800 40841832 -103440657 + (CA)n Simple_repeat Simple_repeat 2 33 0 2714 204 42 4 chr12 40841832 40842279 -103440210 - MER44D DNA MER2_type -1958 529 3 738 169 12 36 chr12 40842280 40842446 -103440043 + L1M4c LINE L1 4685 4846 -1536 2012 181 5 10 chr12 40842610 40843018 -103439471 - L1PA13 LINE L1 -1316 4830 4425 6060 102 13 11 chr12 40843022 40844356 -103438133 + L1PA13 LINE L1 4827 6163 0 2223 116 6 0 chr12 40844364 40844675 -103437814 + AluSq SINE Alu 1 313 0 471 293 39 31 chr12 40844675 40845013 -103437476 + L1ME LINE L1 1012 1391 -4981 543 275 77 91 chr12 40845074 40845503 -103436986 - L1MEd LINE L1 -1133 1357 922 266 143 0 0 chr12 40846532 40846574 -103435915 - MADE1 DNA Mariner -34 46 5 1929 166 7 0 chr12 40846709 40847004 -103435485 + AluSx SINE Alu 1 297 -15 201 39 0 0 chr12 40847006 40847032 -103435457 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2362 179 34 2 chr12 40847657 40848070 -103434419 + MSTB LTR MaLR 1 426 0 1887 131 40 37 chr12 40848785 40849159 -103433330 + THE1C LTR MaLR 1 375 0 1972 180 30 93 chr12 40849323 40849575 -103432914 - MLT1D LTR MaLR 0 505 303 1738 180 0 44 chr12 40849575 40849712 -103432777 + AluJb SINE Alu 1 143 -169 2004 142 7 3 chr12 40849712 40850022 -103432467 + AluSx SINE Alu 1 311 -1 1738 180 0 44 chr12 40850022 40850201 -103432288 + AluJb SINE Alu 143 303 -9 1972 180 30 93 chr12 40850201 40850487 -103432002 - MLT1D LTR MaLR -202 303 1 460 26 0 117 chr12 40850867 40850944 -103431545 - L1PA4 LINE L1 -3 6152 6085 746 93 9 0 chr12 40850944 40851052 -103431437 + L1PA4 LINE L1 5979 6087 -68 969 227 86 36 chr12 40851395 40851744 -103430745 + MSTD LTR MaLR 1 396 0 248 280 120 16 chr12 40852171 40852296 -103430193 - MLT1J LTR MaLR -44 467 330 554 299 6 19 chr12 40852366 40852523 -103429966 - MLT1J LTR MaLR -325 186 32 246 303 56 107 chr12 40852534 40852712 -103429777 - MER5B DNA MER1_type -9 169 1 410 202 168 42 chr12 40852973 40853092 -103429397 - MSTD LTR MaLR -86 310 177 1772 159 63 29 chr12 40854566 40854944 -103427545 + L1MA10 LINE L1 5938 6328 -6 23 33 0 0 chr12 40855411 40855441 -103427048 + AT_rich Low_complexity Low_complexity 1 30 0 383 253 123 7 chr12 40855676 40855822 -103426667 + L1MC/D LINE L1 5625 5787 -2021 7570 26 6 1 chr12 40856013 40857659 -103424830 + L1PA4 LINE L1 4504 6153 -2 23 0 0 0 chr12 40857973 40857996 -103424493 + AT_rich Low_complexity Low_complexity 1 23 0 269 375 0 0 chr12 40858196 40858284 -103424205 - MIR3 SINE MIR -7 201 114 903 280 40 20 chr12 40858564 40858814 -103423675 + MIR SINE MIR 8 262 0 257 367 56 10 chr12 40858884 40859080 -103423409 + L2 LINE L2 2600 2804 -510 28 29 0 0 chr12 40859304 40859339 -103423150 + AT_rich Low_complexity Low_complexity 1 35 0 225 313 40 30 chr12 40859491 40859590 -103422899 + L2 LINE L2 2244 2343 -971 337 342 77 78 chr12 40859618 40860383 -103422106 + L2 LINE L2 2420 3191 -81 3151 21 0 11 chr12 40860898 40861263 -103421226 - L1PA3 LINE L1 -1489 4657 4295 7770 20 0 1 chr12 40861263 40862778 -103419711 + L1PA3 LINE L1 4639 6155 0 3151 21 0 11 chr12 40862778 40862793 -103419696 - L1P LINE L1 -1851 4295 4281 413 288 7 41 chr12 40863519 40863665 -103418824 + L2 LINE L2 3172 3312 -1 2290 156 22 0 chr12 40864031 40864396 -103418093 - MER57A LTR ERV1 -30 373 1 985 109 0 0 chr12 40864396 40864533 -103417956 - MER57A-int LTR ERV1 0 7537 7401 2857 144 20 7 chr12 40864538 40864995 -103417494 + MER57-int LTR ERV1 6684 7146 -391 697 87 39 39 chr12 40864997 40865124 -103417365 + LTR54B LTR ERV1 5 131 -367 566 144 0 0 chr12 40865125 40865215 -103417274 + MER57-int LTR ERV1 7284 7373 -164 23 33 0 0 chr12 40865401 40865431 -103417058 + AT_rich Low_complexity Low_complexity 1 30 0 309 68 0 0 chr12 40866088 40866132 -103416357 + (TG)n Simple_repeat Simple_repeat 2 45 0 243 341 88 43 chr12 40866218 40866546 -103415943 - L2 LINE L2 -537 2777 2435 207 356 34 41 chr12 40867714 40867860 -103414629 - L2 LINE L2 -455 2859 2715 192 152 0 0 chr12 40868066 40868099 -103414390 + GA-rich Low_complexity Low_complexity 4 36 0 195 167 0 0 chr12 40868670 40868712 -103413777 + T-rich Low_complexity Low_complexity 3 44 0 511 170 9 18 chr12 40869340 40869452 -103413037 - L1MB8 LINE L1 -13 6165 6055 24 53 0 0 chr12 40869824 40869862 -103412627 + AT_rich Low_complexity Low_complexity 1 38 0 327 349 42 11 chr12 40870187 40870376 -103412113 + L2 LINE L2 2827 3021 -292 1428 169 51 79 chr12 40870414 40870629 -103411860 - THE1C LTR MaLR 0 375 172 2341 88 0 10 chr12 40870629 40870925 -103411564 - AluY SINE Alu -17 294 2 1428 169 51 79 chr12 40870925 40871064 -103411425 - THE1C LTR MaLR -203 172 31 3313 134 43 8 chr12 40871064 40871571 -103410918 + LTR17 LTR ERV1 256 780 0 14456 87 21 11 chr12 40871573 40873560 -103408929 + HERV17 LTR ERV1 1 2007 -6619 8032 61 1 3 chr12 40873552 40874561 -103407928 + HERV17 LTR ERV1 2430 3436 -5190 * 5784 87 4 3 chr12 40874662 40875434 -103407055 + HERV17 LTR ERV1 2982 3754 -4872 5052 44 8 0 chr12 40875413 40876026 -103406463 + HERV17 LTR ERV1 5405 6022 -2604 * 276 77 0 0 chr12 40876016 40876055 -103406434 + HERV17 LTR ERV1 7510 7548 -1078 * 2339 58 0 10 chr12 40876045 40876340 -103406149 + HERV17 LTR ERV1 8335 8626 0 2350 91 0 12 chr12 40876340 40876670 -103405819 + LTR17 LTR ERV1 1 326 -454 247 118 0 0 chr12 40876685 40876719 -103405770 - THE1C LTR MaLR -321 34 1 2540 111 3 22 chr12 40876878 40877249 -103405240 + THE1B LTR MaLR 1 364 0 249 310 39 70 chr12 40877269 40877398 -103405091 - L3 LINE CR1 -79 1498 1374 428 63 0 4 chr12 40877400 40877623 -103404866 + AluY SINE Alu 1 295 -16 198 0 0 0 chr12 40877623 40877645 -103404844 + (TA)n Simple_repeat Simple_repeat 2 23 0 206 313 100 12 chr12 40877645 40877725 -103404764 - L3 LINE CR1 -203 1374 1288 1247 119 10 15 chr12 40877861 40878062 -103404427 - L1PA16 LINE L1 -3 6163 5964 1475 185 45 31 chr12 40878551 40878843 -103403646 + AluJb SINE Alu 1 296 -16 355 303 76 15 chr12 40878906 40879038 -103403451 - L2 LINE L2 0 3272 3133 359 119 0 0 chr12 40879089 40879148 -103403341 + MER53 DNA DNA 128 186 -3 1420 273 57 8 chr12 40879451 40879960 -103402529 + L1ME3A LINE L1 5633 6166 -4 427 271 107 62 chr12 40880419 40880710 -103401779 + LTR16C LTR ERVL 187 490 -1 201 39 0 0 chr12 40881965 40881991 -103400498 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 356 320 48 84 chr12 40882378 40882712 -103399777 - L2 LINE L2 0 3272 2951 235 182 30 61 chr12 40886205 40886271 -103396218 + MER5B DNA MER1_type 1 64 -114 186 260 0 20 chr12 40888755 40888805 -103393684 + L3 LINE CR1 1216 1264 -313 2297 99 3 0 chr12 40889361 40889663 -103392826 + AluSx SINE Alu 1 303 -9 204 207 121 0 chr12 40889856 40889914 -103392575 + MIR SINE MIR 102 166 -96 436 92 0 103 chr12 40890234 40890321 -103392168 + MADE1 DNA Mariner 1 78 -2 229 211 0 0 chr12 40891208 40891260 -103391229 + A-rich Low_complexity Low_complexity 1 52 0 464 284 17 9 chr12 40891676 40891792 -103390697 + MIR SINE MIR 25 141 -121 391 214 45 0 chr12 40891796 40891885 -103390604 + L1 LINE L1 3525 3617 -2529 322 298 69 0 chr12 40891885 40892016 -103390473 + BaEV-int LTR ERV1 150 289 -6360 21197 159 152 18 chr12 40892037 40894912 -103387577 + L1MA5 LINE L1 11 2501 -3799 8183 56 18 0 chr12 40894912 40896731 -103385758 + L1PA6 LINE L1 4307 6146 -8 21197 159 152 18 chr12 40896731 40899393 -103383096 + L1MA5 LINE L1 2501 6300 0 218 145 145 29 chr12 40899394 40899463 -103383026 + MIR SINE MIR 144 220 -42 418 284 128 25 chr12 40901111 40901315 -103381174 - MIR SINE MIR -1 261 37 323 306 42 76 chr12 40901392 40901536 -103380953 + MIR SINE MIR 1 139 -123 514 281 127 5 chr12 40901897 40902118 -103380371 + MIR SINE MIR 1 248 -14 2235 102 0 3 chr12 40902918 40903222 -103379267 - AluSq SINE Alu -8 305 3 2221 83 7 17 chr12 40903895 40904197 -103378292 + AluY SINE Alu 3 301 -10 23 0 0 0 chr12 40904374 40904397 -103378092 + AT_rich Low_complexity Low_complexity 1 23 0 3538 112 54 4 chr12 40904675 40905227 -103377262 + LTR19B LTR ERV1 1 580 0 231 114 0 0 chr12 40906395 40906430 -103376059 + (CA)n Simple_repeat Simple_repeat 1 35 0 1906 105 60 78 chr12 40908072 40908454 -103374035 + THE1C LTR MaLR 1 375 0 1829 156 16 10 chr12 40910963 40911270 -103371219 + AluJo SINE Alu 1 309 -3 195 323 46 0 chr12 40911995 40912060 -103370429 - L2 LINE L2 0 3313 3246 24 32 0 0 chr12 40912359 40912390 -103370099 + AT_rich Low_complexity Low_complexity 1 31 0 245 380 40 0 chr12 40912988 40913138 -103369351 + MIR SINE MIR 58 213 -49 512 176 37 0 chr12 40913183 40913291 -103369198 + L1MB5 LINE L1 6055 6166 -8 33 25 0 0 chr12 40914925 40914965 -103367524 + AT_rich Low_complexity Low_complexity 1 40 0 371 290 213 7 chr12 40915685 40915840 -103366649 + MIR SINE MIR 32 218 -44 1351 168 91 64 chr12 40916693 40916991 -103365498 + MLT2C1 LTR ERVL 92 397 0 1917 144 3 0 chr12 40917065 40917357 -103365132 + AluSx SINE Alu 1 293 -19 2042 111 0 0 chr12 40917402 40917673 -103364816 + AluSx SINE Alu 1 271 -41 23 33 0 0 chr12 40918455 40918485 -103364004 + AT_rich Low_complexity Low_complexity 1 30 0 237 363 109 15 chr12 40919014 40919281 -103363208 + L3 LINE CR1 160 451 -1126 357 295 39 26 chr12 40919361 40919517 -103362972 - MER112 DNA MER1_type -9 251 94 23 33 0 0 chr12 40919541 40919571 -103362918 + AT_rich Low_complexity Low_complexity 1 30 0 437 268 58 0 chr12 40921099 40921237 -103361252 + L1ME4a LINE L1 5974 6119 -2 2412 195 92 31 chr12 40921627 40922150 -103360339 - MLT1F1 LTR MaLR 0 567 13 624 268 108 17 chr12 40922244 40922475 -103360014 - MIR SINE MIR -4 258 7 2078 138 0 3 chr12 40922497 40922809 -103359680 - AluSx SINE Alu -1 311 1 2782 104 65 5 chr12 40923629 40923726 -103358763 + L1PB1 LINE L1 5682 5772 -379 216 0 0 0 chr12 40923726 40923750 -103358739 + (TG)n Simple_repeat Simple_repeat 2 25 0 2782 104 65 5 chr12 40923750 40924095 -103358394 + L1PB1 LINE L1 5772 6151 0 191 371 0 0 chr12 40924653 40924715 -103357774 - L2 LINE L2 -1 3271 3210 316 266 47 148 chr12 40926316 40926572 -103355917 + MIR SINE MIR 14 243 -19 1092 212 180 6 chr12 40926780 40927091 -103355398 - MLT1A1 LTR MaLR 0 365 1 1984 151 10 0 chr12 40927138 40927443 -103355046 + AluSx SINE Alu 2 309 -3 827 181 107 23 chr12 40927483 40927699 -103354790 - MER46A DNA MER2_type 0 236 3 936 290 22 74 chr12 40927883 40928248 -103354241 + MLT1H1 LTR MaLR 3 348 -207 661 306 29 15 chr12 40928350 40928556 -103353933 + MLT1H1 LTR MaLR 382 590 0 2521 205 12 2 chr12 40930193 40930700 -103351789 + MER67D LTR ERV1 3 514 0 1693 148 4 11 chr12 40930800 40931100 -103351389 + AluJb SINE Alu 16 313 0 3740 193 44 53 chr12 40931826 40931891 -103350598 - L1MB8 LINE L1 -1 6177 6113 1857 139 0 14 chr12 40931891 40932202 -103350287 + AluJb SINE Alu 1 307 0 3740 193 44 53 chr12 40932202 40932747 -103349742 - L1MB8 LINE L1 -65 6113 5564 2253 167 65 2 chr12 40932747 40933148 -103349341 + MSTB LTR MaLR 1 426 0 3740 193 44 53 chr12 40933148 40934274 -103348215 - L1MB8 LINE L1 -614 5564 4465 312 258 11 0 chr12 40934582 40934671 -103347818 - L1MC4a LINE L1 -1907 5901 5812 278 315 90 40 chr12 40934716 40934916 -103347573 - L1MC4a LINE L1 -1979 5829 5620 * 2582 243 135 30 chr12 40934915 40935362 -103347127 - L1MB8 LINE L1 -1716 4430 4032 2002 104 45 3 chr12 40935362 40935650 -103346839 - AluSg SINE Alu -10 300 1 2582 243 135 30 chr12 40935650 40935782 -103346707 - L1MB8 LINE L1 -2114 4032 3915 2726 99 0 3 chr12 40935782 40936147 -103346342 + THE1B LTR MaLR 1 364 0 2582 243 135 30 chr12 40936147 40936475 -103346014 - L1MB8 LINE L1 -2231 3915 3426 2052 130 7 7 chr12 40936597 40936919 -103345570 - AluSx SINE Alu 0 312 1 341 354 66 22 chr12 40937013 40937194 -103345295 + MIR3 SINE MIR 17 205 -3 22 0 0 0 chr12 40937515 40937537 -103344952 + AT_rich Low_complexity Low_complexity 1 22 0 2076 213 32 4 chr12 40938525 40939028 -103343461 + L1 LINE L1 3932 4448 -1698 2050 159 19 8 chr12 40939029 40939399 -103343090 + L1PA16 LINE L1 5791 6164 -2 288 111 0 0 chr12 40939478 40939523 -103342966 + (TG)n Simple_repeat Simple_repeat 2 46 0 1565 181 36 0 chr12 40939576 40939853 -103342636 - MER47B DNA MER2_type -1 417 131 336 48 0 0 chr12 40939947 40939989 -103342500 + (TA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr12 40940229 40940250 -103342239 + AT_rich Low_complexity Low_complexity 1 21 0 222 293 123 19 chr12 40940836 40940942 -103341547 + MIR3 SINE MIR 2 118 -90 227 163 47 47 chr12 40941002 40941088 -103341401 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 258 347 90 0 chr12 40941096 40941240 -103341249 - MIR SINE MIR -57 205 49 22 80 0 0 chr12 40941665 40941715 -103340774 + AT_rich Low_complexity Low_complexity 1 50 0 1512 208 3 7 chr12 40942161 40942459 -103340030 + AluJo SINE Alu 4 300 -12 236 137 20 0 chr12 40942584 40942635 -103339854 + GA-rich Low_complexity Low_complexity 4 55 0 298 277 40 20 chr12 40942992 40943093 -103339396 - L2 LINE L2 -9 3304 3202 190 283 192 10 chr12 40944596 40944695 -103337794 + MIR SINE MIR 67 183 -79 293 311 142 23 chr12 40945492 40945711 -103336778 + MIR SINE MIR 9 253 -9 595 272 31 0 chr12 40945848 40946010 -103336479 + MER97c DNA MER1_type? 2 168 -922 2337 86 0 0 chr12 40946587 40946889 -103335600 - AluSq SINE Alu -11 302 1 1477 187 10 33 chr12 40947326 40947631 -103334858 - AluJo SINE Alu -12 300 3 358 270 251 18 chr12 40948121 40948284 -103334205 - MIR SINE MIR -58 204 4 22 0 0 0 chr12 40948825 40948847 -103333642 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 40949504 40949535 -103332954 + AT_rich Low_complexity Low_complexity 1 31 0 6771 174 12 7 chr12 40950592 40952550 -103329939 + L1PB2 LINE L1 3816 5788 -363 270 0 0 0 chr12 40952550 40952580 -103329909 + (TA)n Simple_repeat Simple_repeat 1 30 0 6771 174 12 7 chr12 40952580 40952941 -103329548 + L1PB2 LINE L1 5788 6146 -5 288 308 0 19 chr12 40953746 40953853 -103328636 + L1ME2 LINE L1 5574 5678 -2130 335 269 75 55 chr12 40953866 40954067 -103328422 + L1ME2 LINE L1 5674 5878 -286 1770 128 80 3 chr12 40954442 40954730 -103327759 + AluSx SINE Alu 1 310 -2 617 71 24 0 chr12 40955115 40955199 -103327290 - AluY SINE Alu -19 292 207 1354 213 23 46 chr12 40955793 40956183 -103326306 + MER52A LTR ERV1 1 381 -1374 4260 227 62 8 chr12 40956208 40957264 -103325225 + MER52A LTR ERV1 644 1755 0 2048 124 26 59 chr12 40957868 40958256 -103324233 + THE1C LTR MaLR 1 375 0 21 57 0 0 chr12 40959924 40959959 -103322530 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 40960793 40960814 -103321675 + AT_rich Low_complexity Low_complexity 1 21 0 1015 151 4 3 chr12 40961005 40961266 -103321223 - MER1B DNA MER1_type 0 339 1 4617 234 78 58 chr12 40962170 40962483 -103320006 + L1M4 LINE L1 14 319 -6223 785 127 0 0 chr12 40962483 40962609 -103319880 + L1MA6 LINE L1 6175 6300 0 4617 234 78 58 chr12 40962609 40963848 -103318641 + L1M4 LINE L1 319 1597 -4945 318 277 0 12 chr12 40964575 40964658 -103317831 + L2 LINE L2 3191 3272 0 204 224 20 0 chr12 40964844 40964893 -103317596 + L2 LINE L2 3261 3310 -3 30 45 0 0 chr12 40965580 40965624 -103316865 + AT_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr12 40965855 40965884 -103316605 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr12 40968666 40968695 -103313794 + AT_rich Low_complexity Low_complexity 1 29 0 182 288 55 14 chr12 40969721 40969794 -103312695 + MIR SINE MIR 75 150 -112 21 36 0 0 chr12 40970996 40971024 -103311465 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr12 40971269 40971314 -103311175 + AT_rich Low_complexity Low_complexity 1 45 0 194 91 30 0 chr12 40971332 40971365 -103311124 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr12 40971424 40971446 -103311043 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr12 40971633 40971673 -103310816 + AT_rich Low_complexity Low_complexity 1 40 0 1917 158 7 0 chr12 40973923 40974233 -103308256 - AluJb SINE Alu 0 312 1 7173 33 10 0 chr12 40975229 40976101 -103306388 - L1PA5 LINE L1 -1703 4443 3563 7588 40 0 7 chr12 40976101 40977795 -103304694 + L1PA5 LINE L1 4439 6136 -18 6582 42 0 6 chr12 40976992 40977795 -103304694 + L1PA5 LINE L1 5339 6175 0 352 0 0 0 chr12 40977795 40977834 -103304655 + (TAAA)n Simple_repeat Simple_repeat 4 72 0 188 382 0 0 chr12 40980596 40980651 -103301838 + L2 LINE L2 3209 3263 -9 1734 151 11 7 chr12 40980675 40980959 -103301530 - AluJo SINE Alu -23 289 5 281 279 124 56 chr12 40981002 40981163 -103301326 + MER5A DNA MER1_type 18 189 0 834 184 159 18 chr12 40982748 40983031 -103299458 + MER33 DNA MER1_type 1 323 -1 2198 106 7 0 chr12 40983128 40983429 -103299060 - AluSx SINE Alu -6 306 4 637 252 122 40 chr12 40983441 40983619 -103298870 - L1ME LINE L1 -305 5816 5654 1999 60 0 12 chr12 40983619 40983870 -103298619 - AluY SINE Alu -9 302 55 637 252 122 40 chr12 40983870 40984020 -103298469 - L1ME LINE L1 -467 5654 5461 2259 109 19 30 chr12 40984122 40984490 -103297999 + THE1B LTR MaLR 1 364 0 10639 100 40 2 chr12 40984491 40986012 -103296477 + THE1B-int LTR MaLR 2 1580 0 2131 113 51 25 chr12 40986012 40986367 -103296122 + THE1B LTR MaLR 1 364 0 329 95 0 0 chr12 40986373 40986415 -103296074 + THE1A LTR MaLR 312 353 -2 25 0 0 0 chr12 40986815 40986840 -103295649 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr12 40987950 40987977 -103294512 + AT_rich Low_complexity Low_complexity 1 27 0 1986 138 0 13 chr12 40988291 40988589 -103293900 + AluSx SINE Alu 1 294 -18 1836 144 44 9 chr12 40988773 40989093 -103293396 + MER44D DNA MER2_type 9 609 0 26 50 0 0 chr12 40989540 40989580 -103292909 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr12 40989663 40989684 -103292805 + AT_rich Low_complexity Low_complexity 1 21 0 2677 17 0 0 chr12 40990880 40991180 -103291309 + AluYa5 SINE Alu 1 300 -11 1187 179 0 14 chr12 40991474 40991692 -103290797 - AluJo SINE Alu -12 300 86 1362 188 46 10 chr12 40991924 40992227 -103290262 + MER33 DNA MER1_type 10 323 -1 29 78 0 0 chr12 40992574 40992638 -103289851 + AT_rich Low_complexity Low_complexity 1 64 0 198 0 0 0 chr12 40993269 40993291 -103289198 + (TC)n Simple_repeat Simple_repeat 2 23 0 776 276 79 9 chr12 40993633 40993861 -103288628 + MIR SINE MIR 6 249 -13 1584 90 34 0 chr12 40994140 40994374 -103288115 + MER75B DNA T2_type 2 243 0 195 129 0 0 chr12 40995555 40995586 -103286903 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 783 242 11 22 chr12 40996325 40996507 -103285982 - MER5A DNA MER1_type 0 189 10 21 0 0 0 chr12 40997058 40997079 -103285410 + AT_rich Low_complexity Low_complexity 1 21 0 1281 269 120 62 chr12 40997616 40997974 -103284515 - L2 LINE L2 -1373 1941 1605 1993 128 13 0 chr12 40997974 40998278 -103284211 - AluSg SINE Alu -2 308 1 1281 269 120 62 chr12 40998278 40998644 -103283845 - L2 LINE L2 -1709 1605 1175 2727 23 0 0 chr12 40999457 40999767 -103282722 + AluYa5 SINE Alu 1 310 -1 294 73 0 0 chr12 40999984 41000025 -103282464 + (GA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 41000413 41000436 -103282053 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 41000681 41000706 -103281783 + AT_rich Low_complexity Low_complexity 1 25 0 2048 130 3 0 chr12 41000977 41001277 -103281212 - AluSq SINE Alu -10 303 3 933 147 7 0 chr12 41001521 41001664 -103280825 + AluSq/x SINE Alu 3 146 -167 202 353 32 39 chr12 41002908 41003064 -103279425 + L2 LINE L2 2614 2768 -546 351 234 113 4 chr12 41003444 41003591 -103278898 + MIR SINE MIR 3 170 -62 235 316 77 39 chr12 41003951 41004031 -103278458 + MIR SINE MIR 32 107 -155 225 0 0 0 chr12 41004031 41004056 -103278433 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 649 56 0 11 chr12 41004056 41004140 -103278349 - L1MA1 LINE L1 -5 6297 6215 235 316 77 39 chr12 41004140 41004218 -103278271 + MIR SINE MIR 106 192 -70 510 225 182 0 chr12 41004262 41004449 -103278040 - MIR SINE MIR -5 257 37 5447 119 2 1 chr12 41006358 41007155 -103275334 - L1PA15 LINE L1 -3 6162 5365 1968 80 50 47 chr12 41007161 41007460 -103275029 - AluSg SINE Alu -10 300 1 21 36 0 0 chr12 41007555 41007583 -103274906 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr12 41007615 41007645 -103274844 + AT_rich Low_complexity Low_complexity 1 30 0 4834 82 4 30 chr12 41010268 41011002 -103271487 + L1P LINE L1 62 776 -5370 246 56 0 0 chr12 41011402 41011438 -103271051 - L1M LINE L1 -879 5289 5254 * 1077 165 85 0 chr12 41011411 41011454 -103271035 - L1 LINE L1 -866 5280 5242 2025 195 62 14 chr12 41011454 41011890 -103270599 - MSTB2 LTR MaLR 0 457 1 1077 165 85 0 chr12 41011890 41012070 -103270419 - L1 LINE L1 -904 5242 5038 21 0 0 0 chr12 41012230 41012251 -103270238 + AT_rich Low_complexity Low_complexity 1 21 0 1470 200 0 23 chr12 41012310 41012610 -103269879 - AluJo SINE Alu -19 293 1 943 304 110 42 chr12 41012903 41013710 -103268779 - L2 LINE L2 -191 3081 2220 204 40 0 0 chr12 41013717 41013742 -103268747 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 208 282 103 68 chr12 41014603 41014720 -103267769 + L2 LINE L2 3152 3272 0 1940 92 3 31 chr12 41014977 41015271 -103267218 + AluY SINE Alu 18 303 -8 294 73 0 0 chr12 41015494 41015535 -103266954 + (GA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 41015923 41015946 -103266543 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 41016191 41016216 -103266273 + AT_rich Low_complexity Low_complexity 1 25 0 303 331 16 8 chr12 41016338 41016462 -103266027 + HAL1b LINE L1 1174 1298 -50 2279 86 7 3 chr12 41016487 41016789 -103265700 - AluSq SINE Alu -10 303 1 585 314 54 16 chr12 41017431 41017673 -103264816 - MIR SINE MIR 0 262 12 1962 89 3 31 chr12 41019148 41019441 -103263048 - AluY SINE Alu -9 302 18 208 282 103 68 chr12 41019698 41019815 -103262674 - L2 LINE L2 0 3272 3152 204 40 0 0 chr12 41020676 41020701 -103261788 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 931 304 110 42 chr12 41020708 41021515 -103260974 + L2 LINE L2 2220 3081 -191 1464 199 0 27 chr12 41021808 41022109 -103260380 + AluJo SINE Alu 1 293 -19 21 0 0 0 chr12 41022168 41022189 -103260300 + AT_rich Low_complexity Low_complexity 1 21 0 4849 159 31 76 chr12 41022349 41022529 -103259960 + L1MA10 LINE L1 5038 5225 -1109 2025 195 62 14 chr12 41022529 41022965 -103259524 + MSTB2 LTR MaLR 1 457 0 4849 159 31 76 chr12 41022965 41023561 -103258928 + L1MA10 LINE L1 5225 5751 -583 189 0 0 0 chr12 41023561 41023582 -103258907 + (CA)n Simple_repeat Simple_repeat 2 22 0 4849 159 31 76 chr12 41023582 41024141 -103258348 + L1MA10 LINE L1 5751 6334 0 221 57 29 0 chr12 41025715 41025750 -103256739 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 882 162 28 0 chr12 41025777 41025919 -103256570 - FRAM SINE Alu -27 149 4 203 187 27 27 chr12 41026953 41027028 -103255461 + (TA)n Simple_repeat Simple_repeat 1 75 0 1046 103 85 24 chr12 41027082 41027247 -103255242 - AluSx SINE Alu -137 175 1 4061 236 127 16 chr12 41027357 41028371 -103254118 + Tigger3b DNA MER2_type 2 1128 -103 3021 116 31 11 chr12 41028387 41028843 -103253646 + MER1A DNA MER1_type 59 523 -6 593 223 0 0 chr12 41028850 41028962 -103253527 + Tigger3b DNA MER2_type 1120 1231 -1 266 319 31 6 chr12 41029699 41029862 -103252627 + L1MEd LINE L1 13 179 -5940 330 287 116 63 chr12 41030097 41030477 -103252012 + L1MEd LINE L1 440 839 -5280 1202 226 0 0 chr12 41030575 41030832 -103251657 - L1 LINE L1 -1059 5087 4831 910 282 39 41 chr12 41030828 41031548 -103250941 + L1MEd LINE L1 975 1726 -4584 * 373 283 81 29 chr12 41031908 41032290 -103250199 + L1MEd LINE L1 2130 2531 -3598 2154 189 57 30 chr12 41032290 41032830 -103249659 + L1MD3 LINE L1 7439 7993 -2 1041 208 69 86 chr12 41032828 41033265 -103249224 + L1MC4 LINE L1 7560 7991 -51 * 1582 191 11 7 chr12 41033265 41033572 -103248917 - AluJo SINE Alu 0 313 6 1041 208 69 86 chr12 41033572 41033624 -103248865 + L1MC4 LINE L1 7991 8042 0 8161 159 32 24 chr12 41033783 41035511 -103246978 + L1MA2 LINE L1 8 3014 -4551 2195 110 24 0 chr12 41035511 41035803 -103246686 + AluSx SINE Alu 2 300 -12 8161 159 32 24 chr12 41035803 41035968 -103246521 + L1MA2 LINE L1 3014 3176 -4389 2393 120 29 0 chr12 41035969 41036310 -103246179 + THE1B LTR MaLR 1 351 -13 13751 169 21 41 chr12 41036312 41036821 -103245668 + L1MA2 LINE L1 3204 3722 -4001 3020 90 50 0 chr12 41036821 41037244 -103245245 + MLT2A1 LTR ERVL 1 444 0 13751 169 21 41 chr12 41037244 41041349 -103241140 + L1MA2 LINE L1 3722 7723 0 4785 236 27 22 chr12 41042235 41043769 -103238720 + L1 LINE L1 3951 5492 -2073 254 313 12 24 chr12 41045219 41045302 -103237187 + MIR SINE MIR 16 97 -111 238 316 108 22 chr12 41045392 41045542 -103236947 + MIR SINE MIR 16 181 -66 270 348 43 0 chr12 41046744 41046836 -103235653 - L2 LINE L2 -8 3264 3169 2241 126 0 0 chr12 41047659 41047969 -103234520 - AluSg SINE Alu 0 310 1 2589 56 0 0 chr12 41048304 41048608 -103233881 - AluY SINE Alu -7 304 1 2221 98 3 3 chr12 41048733 41049060 -103233429 + L1PA8 LINE L1 4927 5253 -893 6630 71 23 1 chr12 41049189 41050127 -103232362 + L1PA8 LINE L1 5213 6170 -2 426 244 0 43 chr12 41050128 41050243 -103232246 - MIR SINE MIR -37 225 116 2444 73 0 16 chr12 41050341 41050656 -103231833 + AluY SINE Alu 1 310 -1 22 35 0 0 chr12 41051565 41051594 -103230895 + AT_rich Low_complexity Low_complexity 1 29 0 214 191 0 21 chr12 41051950 41051997 -103230492 + L2 LINE L2 3264 3309 -4 23 33 0 0 chr12 41053315 41053345 -103229144 + AT_rich Low_complexity Low_complexity 1 30 0 1707 124 4 24 chr12 41053703 41053953 -103228536 + AluSg/x SINE Alu 65 309 -3 1304 211 83 62 chr12 41055294 41055610 -103226879 - MSTD LTR MaLR -2 394 67 2570 92 30 14 chr12 41055610 41055979 -103226510 + THE1C LTR MaLR 1 375 0 1304 211 83 62 chr12 41055979 41056046 -103226443 - MSTD LTR MaLR -329 67 3 181 359 120 26 chr12 41056258 41056375 -103226114 + L2 LINE L2 3118 3245 -27 1652 155 0 59 chr12 41056400 41056690 -103225799 - AluJo SINE Alu -39 273 1 380 198 63 61 chr12 41056723 41056888 -103225601 - L1ME3A LINE L1 -215 5951 5785 954 259 47 20 chr12 41057179 41057638 -103224851 + MLT1E2 LTR MaLR 60 607 -19 1124 291 62 67 chr12 41057920 41058534 -103223955 + MLT1E2-int LTR MaLR 661 1271 -100 570 237 116 82 chr12 41058723 41058955 -103223534 + MLT1E2 LTR MaLR 60 299 -327 804 232 62 0 chr12 41058993 41059170 -103223319 + MLT1E2 LTR MaLR 439 626 0 230 235 44 15 chr12 41059194 41059262 -103223227 - L1ME3A LINE L1 -579 5583 5514 329 243 81 47 chr12 41059321 41059469 -103223020 - L1ME3A LINE L1 -731 5431 5279 344 81 3 46 chr12 41059470 41059485 -103223004 - L1PA3 LINE L1 -6 6149 6135 212 57 0 29 chr12 41059485 41059520 -103222969 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 344 81 3 46 chr12 41059520 41059579 -103222910 - L1PA3 LINE L1 -20 6135 6076 377 242 73 48 chr12 41059748 41059913 -103222576 - L1ME LINE L1 -733 5431 5263 19009 32 2 0 chr12 41059926 41063002 -103219487 - L1PA3 LINE L1 -3 6152 3072 42760 32 21 1 chr12 41063016 41069044 -103213445 - L1HS LINE L1 -1 6154 4 24667 50 1 3 chr12 41069045 41072134 -103210355 - L1PA3 LINE L1 -3059 3087 3 260 234 48 54 chr12 41072134 41072301 -103210188 - L1ME LINE L1 -869 5277 5112 1798 130 3 85 chr12 41072380 41072711 -103209778 - AluSx SINE Alu -8 304 1 428 51 17 0 chr12 41072780 41072839 -103209650 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 3115 157 26 2 chr12 41072839 41073379 -103209110 - L1MB2 LINE L1 -39 6132 5580 1702 227 78 73 chr12 41073379 41073930 -103208559 - MLT2B3 LTR ERVL 0 554 1 1169 195 14 65 chr12 41073930 41074222 -103208267 - L1MB2 LINE L1 -587 5584 5308 3750 234 73 10 chr12 41074272 41075337 -103207152 - L1 LINE L1 -762 5384 4247 234 0 0 0 chr12 41075337 41075363 -103207126 + (TG)n Simple_repeat Simple_repeat 2 27 0 3750 234 73 10 chr12 41075363 41075385 -103207104 - L1 LINE L1 -1899 4247 4228 841 189 89 66 chr12 41076329 41076631 -103205858 + MLT1C LTR MaLR 6 314 -153 337 153 24 52 chr12 41076741 41076818 -103205671 - AluS SINE Alu -230 72 1 737 286 150 4 chr12 41076845 41077192 -103205297 - L2 LINE L2 -240 3073 2681 * 1000 306 88 66 chr12 41077190 41077911 -103204578 + L2 LINE L2 2149 2899 -414 2173 95 3 36 chr12 41077911 41078215 -103204274 - AluSc SINE Alu -15 294 1 1000 306 88 66 chr12 41078215 41078603 -103203886 + L2 LINE L2 2899 3277 -36 21 0 0 0 chr12 41078761 41078782 -103203707 + AT_rich Low_complexity Low_complexity 1 21 0 202 278 25 130 chr12 41079052 41079214 -103203275 + L3 LINE CR1 626 770 -807 224 396 97 22 chr12 41080047 41080728 -103201761 - L2 LINE L2 -605 2709 1978 388 339 26 0 chr12 41082437 41082552 -103199937 + L2 LINE L2 3154 3271 -1 986 123 80 71 chr12 41083379 41083591 -103198898 + L1MD1 LINE L1 6029 6242 0 360 269 95 108 chr12 41084386 41084795 -103197694 + L1MC5 LINE L1 7452 7855 -106 2156 111 0 9 chr12 41085594 41085909 -103196580 - AluSx SINE Alu 0 312 1 207 167 0 0 chr12 41087715 41087751 -103194738 + CT-rich Low_complexity Low_complexity 1 36 0 1064 246 82 77 chr12 41087997 41088437 -103194052 + MER65B LTR ERV1 2 513 -18 303 213 74 57 chr12 41088462 41088584 -103193905 + L1ME4a LINE L1 5983 6106 -15 192 77 0 0 chr12 41088711 41088737 -103193752 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1912 180 63 27 chr12 41089265 41089710 -103192779 - MER65C LTR ERV1 0 461 1 436 285 23 32 chr12 41089818 41090039 -103192450 + L1ME4a LINE L1 5664 5882 -239 209 196 43 0 chr12 41090249 41090295 -103192194 + GA-rich Low_complexity Low_complexity 4 51 0 22 35 0 0 chr12 41092271 41092300 -103190189 + AT_rich Low_complexity Low_complexity 1 29 0 340 297 172 0 chr12 41093120 41093248 -103189241 - MIR SINE MIR 0 262 113 1794 301 96 36 chr12 41093868 41094179 -103188310 + L2 LINE L2 1834 2125 -1188 1086 193 157 54 chr12 41094179 41094510 -103187979 + MLT1A1 LTR MaLR 1 365 0 1794 301 96 36 chr12 41094510 41095455 -103187034 + L2 LINE L2 2125 3171 -142 2276 85 3 10 chr12 41095458 41095765 -103186724 + AluY SINE Alu 1 305 -6 1358 92 0 0 chr12 41095765 41095938 -103186551 + AluSp SINE Alu 134 306 -7 221 167 30 121 chr12 41095944 41096010 -103186479 + L2 LINE L2 3139 3198 -74 246 229 0 0 chr12 41096247 41096308 -103186181 + L1ME4a LINE L1 6061 6121 0 421 80 35 6 chr12 41097673 41097749 -103184740 + MLT2A2 LTR ERVL 388 453 0 5510 177 48 1 chr12 41097749 41098883 -103183606 + L1 LINE L1 3653 4840 -1306 1431 129 45 24 chr12 41098896 41099183 -103183306 + L1MA7 LINE L1 5999 6291 0 2304 206 24 24 chr12 41099240 41099817 -103182672 + L1MB1 LINE L1 3211 3787 -2359 392 161 86 37 chr12 41100697 41100778 -103181711 + L1MDa LINE L1 16 100 -6440 652 164 9 0 chr12 41100784 41100900 -103181589 + L1MD1 LINE L1 6074 6190 -52 1824 105 56 4 chr12 41100954 41101221 -103181268 + AluSg SINE Alu 12 292 -18 1773 186 53 11 chr12 41101221 41101582 -103180907 + MER67C LTR ERV1 26 401 -309 2820 176 8 4 chr12 41101585 41102069 -103180420 - MER66B LTR ERV1 0 486 1 2096 200 41 15 chr12 41102073 41104327 -103178162 + L1MB1 LINE L1 3787 6166 -23 1998 132 89 8 chr12 41104327 41104694 -103177795 + L1MB1 LINE L1 5769 6168 0 2096 200 41 15 chr12 41104694 41104715 -103177774 + L1MB1 LINE L1 6166 6185 -4 418 246 93 65 chr12 41105303 41105551 -103176938 + L1MC5 LINE L1 7198 7452 -509 27 29 0 0 chr12 41105564 41105598 -103176891 + AT_rich Low_complexity Low_complexity 1 34 0 390 265 119 7 chr12 41105611 41105762 -103176727 + L1MC4 LINE L1 7735 7902 -140 1158 294 93 13 chr12 41105815 41105978 -103176511 + L1ME3A LINE L1 2918 3067 -3079 1806 172 0 0 chr12 41105978 41106275 -103176214 + AluSx SINE Alu 1 297 -15 1158 294 93 13 chr12 41106275 41107034 -103175455 + L1ME3A LINE L1 3067 3914 -2232 2358 70 3 10 chr12 41107082 41107395 -103175094 + AluY SINE Alu 1 311 0 232 283 0 0 chr12 41107395 41107455 -103175034 + L1ME3A LINE L1 4090 4149 -1997 750 214 80 85 chr12 41107532 41107756 -103174733 + MER58A DNA MER1_type 2 224 0 1722 271 99 37 chr12 41107838 41109081 -103173408 + L1ME3A LINE L1 4808 6170 0 1950 126 0 10 chr12 41110187 41110480 -103172009 - AluSx SINE Alu -22 290 1 315 0 0 0 chr12 41110627 41110662 -103171827 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 399 21 0 0 chr12 41110661 41110709 -103171780 + (GA)n Simple_repeat Simple_repeat 1 48 0 29 0 0 0 chr12 41111281 41111310 -103171179 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr12 41112118 41112147 -103170342 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 41112411 41112432 -103170057 + AT_rich Low_complexity Low_complexity 1 21 0 893 325 97 50 chr12 41112716 41113143 -103169346 - L3 LINE CR1 -89 1488 1026 460 130 0 13 chr12 41113143 41113220 -103169269 + MER116 DNA Mariner 5 80 0 893 325 97 50 chr12 41113220 41113367 -103169122 - L3 LINE CR1 -551 1026 887 507 230 93 22 chr12 41113492 41113631 -103168858 - MIR SINE MIR -21 241 93 5536 55 0 7 chr12 41114257 41114963 -103167526 + L1PA7 LINE L1 5454 6154 0 204 67 0 0 chr12 41114968 41114998 -103167491 + (TAAAAA)n Simple_repeat Simple_repeat 4 33 0 696 274 18 0 chr12 41115018 41115186 -103167303 + MIR SINE MIR 57 227 -35 23 54 0 0 chr12 41115190 41115227 -103167262 + AT_rich Low_complexity Low_complexity 1 37 0 2333 91 3 0 chr12 41116012 41116308 -103166181 + AluSp SINE Alu 1 297 -16 820 121 0 64 chr12 41118117 41118258 -103164231 - FLAM_C SINE Alu -1 132 1 204 182 0 0 chr12 41118763 41118807 -103163682 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 491 257 33 26 chr12 41120381 41120533 -103161956 - MIR SINE MIR -26 236 84 356 311 34 51 chr12 41120700 41120877 -103161612 + L1ME LINE L1 4152 4325 -1821 3606 153 38 19 chr12 41121339 41122059 -103160430 - L1MB7 LINE L1 -8 6176 5444 351 326 27 16 chr12 41122570 41122757 -103159732 + L1ME LINE L1 5265 5453 -717 1991 126 136 16 chr12 41123015 41123397 -103159092 + MSTA LTR MaLR 1 428 0 702 204 121 11 chr12 41123529 41123708 -103158781 + MIR SINE MIR 38 236 -26 264 176 29 73 chr12 41123846 41123914 -103158575 - L2 LINE L2 -5 3308 3244 205 327 204 6 chr12 41124964 41125126 -103157363 - MIR SINE MIR -46 216 23 322 359 34 26 chr12 41126279 41126396 -103156093 - L2 LINE L2 -8 3264 3147 267 79 0 0 chr12 41128206 41128244 -103154245 + (TA)n Simple_repeat Simple_repeat 1 38 0 1625 189 0 14 chr12 41128265 41128551 -103153938 - AluSx SINE Alu -30 282 1 2313 88 3 3 chr12 41128770 41129067 -103153422 - AluSp SINE Alu -16 297 1 3807 107 5 0 chr12 41130486 41131037 -103151452 + MER41A LTR ERV1 1 554 0 236 333 58 25 chr12 41131357 41131477 -103151012 - MIR3 SINE MIR -9 199 76 27 29 0 0 chr12 41131658 41131692 -103150797 + AT_rich Low_complexity Low_complexity 1 34 0 480 18 0 0 chr12 41131975 41132032 -103150457 + (TC)n Simple_repeat Simple_repeat 1 57 0 313 267 61 0 chr12 41133678 41133809 -103148680 + L1ME4a LINE L1 5766 5904 -217 225 198 62 10 chr12 41133811 41133907 -103148582 + (TA)n Simple_repeat Simple_repeat 1 101 0 662 196 0 14 chr12 41134012 41134150 -103148339 - MIR SINE MIR -15 247 112 1638 220 3 21 chr12 41135366 41135738 -103146751 + MLT1A1 LTR MaLR 1 365 0 467 205 79 53 chr12 41135792 41135982 -103146507 + MER63 DNA MER1_type 1 195 -866 * 1127 216 75 23 chr12 41135979 41136326 -103146163 + MER63 DNA MER1_type 641 1005 -56 448 237 42 34 chr12 41136461 41136579 -103145910 - MER5A DNA MER1_type -16 173 55 212 310 161 11 chr12 41136625 41136712 -103145777 - L2 LINE L2 -11 3261 3162 2100 119 3 7 chr12 41137147 41137441 -103145048 + AluSx SINE Alu 1 293 -19 1209 95 18 24 chr12 41138350 41138686 -103143803 + (GAAA)n Simple_repeat Simple_repeat 1 335 0 493 294 95 17 chr12 41139026 41139257 -103143232 - MIR SINE MIR 0 262 14 24 67 0 0 chr12 41139287 41139332 -103143157 + AT_rich Low_complexity Low_complexity 1 45 0 2391 75 0 38 chr12 41140670 41140988 -103141501 - AluSg SINE Alu -4 306 1 2571 217 61 69 chr12 41143545 41144194 -103138295 - L1ME1 LINE L1 -5 6161 5508 2207 97 0 13 chr12 41144194 41144492 -103137997 + AluSc SINE Alu 1 294 -15 2571 217 61 69 chr12 41144492 41145545 -103136944 - L1ME1 LINE L1 -658 5508 4469 900 261 40 10 chr12 41145545 41145848 -103136641 + MLT1C LTR MaLR 156 467 0 51 83 0 0 chr12 41145992 41146113 -103136376 + AT_rich Low_complexity Low_complexity 1 121 0 274 268 0 0 chr12 41146190 41146246 -103136243 - L2 LINE L2 -2 3270 3215 2262 176 52 2 chr12 41146361 41146786 -103135703 - L1PA16 LINE L1 -9 6157 5712 203 262 0 0 chr12 41146924 41146985 -103135504 + A-rich Low_complexity Low_complexity 1 61 0 * 205 77 77 0 chr12 41146948 41146987 -103135502 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 673 273 88 73 chr12 41148140 41148551 -103133938 - MLT1H1 LTR MaLR -3 552 130 610 182 63 0 chr12 41149354 41149447 -103133042 - MER3 DNA MER1_type 0 209 102 590 75 0 0 chr12 41149447 41149527 -103132962 - MADE1 DNA Mariner 0 80 1 610 182 63 0 chr12 41149527 41149576 -103132913 - MER3 DNA MER1_type -107 102 58 2220 117 3 0 chr12 41149603 41149910 -103132579 - AluSx SINE Alu -4 308 1 366 329 14 56 chr12 41149949 41150162 -103132327 + L2 LINE L2 2521 2724 -590 210 331 54 31 chr12 41150176 41150306 -103132183 + L2 LINE L2 2936 3068 -204 262 347 126 12 chr12 41150575 41150742 -103131747 + L2 LINE L2 2863 3048 -224 21 71 0 0 chr12 41152417 41152459 -103130030 + AT_rich Low_complexity Low_complexity 1 42 0 1384 144 0 0 chr12 41152652 41152846 -103129643 + AluSq SINE Alu 1 194 -119 395 189 81 34 chr12 41152857 41153005 -103129484 + L1M4 LINE L1 5121 5275 -871 627 194 107 20 chr12 41153315 41153511 -103128978 - MLT1A1 LTR MaLR -127 238 26 476 287 0 0 chr12 41154596 41154725 -103127764 - MER94 DNA DNA -5 129 1 270 253 144 41 chr12 41154760 41154906 -103127583 - L2 LINE L2 -560 2754 2594 2518 55 0 10 chr12 41155185 41155497 -103126992 - AluY SINE Alu -2 309 1 380 355 121 23 chr12 41155500 41155958 -103126531 + L2 LINE L2 2690 3219 -94 23 0 0 0 chr12 41156042 41156065 -103126424 + AT_rich Low_complexity Low_complexity 1 23 0 733 178 15 22 chr12 41156164 41156299 -103126190 - AluJb SINE Alu -178 134 1 1219 149 56 63 chr12 41156773 41157075 -103125414 - MER44D DNA MER2_type -38 571 2 2143 148 57 31 chr12 41157966 41158482 -103124007 - MLT2A2 LTR ERVL -2 552 1 419 333 72 46 chr12 41158518 41158975 -103123514 - L1 LINE L1 -1531 4615 4147 1742 237 84 22 chr12 41159069 41159558 -103122931 + LTR40a LTR ERVL 1 519 0 2319 93 0 3 chr12 41159818 41160120 -103122369 + AluSg SINE Alu 1 301 -9 2212 114 0 3 chr12 41160121 41160418 -103122071 + AluSx SINE Alu 1 296 -16 323 321 70 58 chr12 41160469 41160883 -103121606 - ERVL LTR ERVL -335 5429 5011 519 313 35 46 chr12 41160953 41161298 -103121191 - ERVL LTR ERVL -956 4808 4468 858 322 44 0 chr12 41161411 41161753 -103120736 - ERVL LTR ERVL -3496 2197 1802 785 255 49 36 chr12 41164289 41164547 -103117942 - L1MEc LINE L1 -6022 374 110 198 118 0 0 chr12 41164547 41164581 -103117908 + (TTG)n Simple_repeat Simple_repeat 2 35 0 785 255 49 36 chr12 41164581 41164651 -103117838 - L1MEc LINE L1 -6286 110 42 41539 44 1 3 chr12 41165548 41171700 -103110789 - L1PA3 LINE L1 -3 6152 13 798 246 5 0 chr12 41171864 41172071 -103110418 + L1 LINE L1 2728 2935 -3211 2489 249 81 20 chr12 41172073 41174109 -103108380 - L1 LINE L1 -3365 3017 971 794 128 0 0 chr12 41174109 41174226 -103108263 - MSTB LTR MaLR -309 117 1 601 237 40 109 chr12 41174952 41175273 -103107216 + AluJo SINE Alu 1 299 -3 2827 99 30 180 chr12 41175641 41176368 -103106121 + MER51A LTR ERV1 1 618 -16 2125 135 0 0 chr12 41176785 41177089 -103105400 - AluSx SINE Alu -8 304 1 31 0 0 0 chr12 41177123 41177154 -103105335 + AT_rich Low_complexity Low_complexity 1 31 0 2137 105 10 7 chr12 41177459 41177753 -103104736 - AluSp SINE Alu -18 295 1 220 286 10 61 chr12 41178202 41178300 -103104189 - MIR SINE MIR -95 167 75 3449 101 28 1 chr12 41179030 41179569 -103102920 + MER41A LTR ERV1 1 554 0 1881 172 27 12 chr12 41180351 41180689 -103101800 + MER61A LTR ERV1 1 343 0 25 75 0 0 chr12 41181042 41181095 -103101394 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chr12 41181454 41181482 -103101007 + AT_rich Low_complexity Low_complexity 1 28 0 206 292 42 0 chr12 41181506 41181578 -103100911 + MER5C DNA MER1_type 14 88 -236 2468 66 0 0 chr12 41182169 41182470 -103100019 + AluY SINE Alu 1 301 -10 206 296 45 45 chr12 41183188 41183276 -103099213 + L2 LINE L2 2334 2421 -893 1605 240 20 24 chr12 41183286 41183781 -103098708 + MLT1D LTR MaLR 13 505 0 468 153 36 207 chr12 41184200 41184422 -103098067 + L1ME LINE L1 5543 5726 -440 550 207 7 7 chr12 41184431 41184576 -103097913 + L1MA10 LINE L1 6190 6334 0 452 311 53 0 chr12 41184576 41184785 -103097704 + L1MC/D LINE L1 5602 5821 -1987 948 118 0 0 chr12 41184788 41184915 -103097574 - AluSq/x SINE Alu -186 127 1 26 0 0 0 chr12 41185019 41185045 -103097444 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 41185689 41185711 -103096778 + AT_rich Low_complexity Low_complexity 1 22 0 518 160 4 6 chr12 41185714 41185958 -103096531 + AluSx SINE Alu 1 299 -13 185 280 20 0 chr12 41186533 41186583 -103095906 + L2 LINE L2 3221 3271 -1 287 292 73 21 chr12 41186885 41186981 -103095508 - MIR SINE MIR -96 166 66 434 274 96 17 chr12 41187134 41187354 -103095135 - L1M4 LINE L1 -2969 3177 2976 1539 175 88 12 chr12 41187354 41187674 -103094815 + MER2 DNA MER2_type 1 344 0 434 274 96 17 chr12 41187674 41187861 -103094628 - L1M4 LINE L1 -3170 2976 2738 546 37 37 0 chr12 41188216 41188297 -103094192 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 675 201 36 22 chr12 41188727 41188866 -103093623 - FLAM_C SINE Alu -2 141 1 524 209 76 13 chr12 41188981 41189139 -103093350 - L1MD3 LINE L1 0 7995 7828 2332 102 0 0 chr12 41189819 41190122 -103092367 - AluSq SINE Alu -10 303 1 243 0 0 0 chr12 41190618 41190645 -103091844 + (TG)n Simple_repeat Simple_repeat 1 27 0 399 317 79 45 chr12 41190687 41191129 -103091360 - ERVL LTR ERVL -397 5367 4911 274 259 78 26 chr12 41191186 41191302 -103091187 - ERVL LTR ERVL -994 4770 4649 2337 110 0 0 chr12 41191466 41191766 -103090723 + AluSq SINE Alu 1 300 -13 27 65 0 0 chr12 41191997 41192028 -103090461 + AT_rich Low_complexity Low_complexity 1 31 0 227 257 27 14 chr12 41192652 41192726 -103089763 - MLT1I LTR MaLR -24 385 311 359 174 67 15 chr12 41192786 41192890 -103089599 - MLT1J2 LTR MaLR -237 172 67 437 308 73 30 chr12 41193015 41193249 -103089240 - MIR SINE MIR -1 261 18 378 61 0 0 chr12 41193562 41193611 -103088878 + (TG)n Simple_repeat Simple_repeat 2 50 0 285 204 139 109 chr12 41194000 41194042 -103088447 - L1MC5 LINE L1 -268 7693 7654 1841 160 35 0 chr12 41194042 41194329 -103088160 + AluSx SINE Alu 1 297 -15 285 204 139 109 chr12 41194329 41194752 -103087737 - L1MC5 LINE L1 -307 7654 7214 735 221 31 81 chr12 41194936 41195294 -103087195 - L1MC5 LINE L1 -861 7100 6761 2219 138 161 4 chr12 41195803 41196274 -103086215 - LTR10A LTR ERV1 -63 546 2 9665 235 14 28 chr12 41196351 41198805 -103083684 - LTR10A-int LTR ERV1 -2 6647 4229 254 179 0 18 chr12 41198805 41198861 -103083628 - HERVI LTR ERV1 -2478 5307 5253 * 4866 262 18 33 chr12 41198858 41200737 -103081752 - HERVI LTR ERV1 -2712 4114 3169 2173 89 7 14 chr12 41200737 41201029 -103081460 - AluY SINE Alu -21 290 1 4866 262 18 33 chr12 41201029 41201608 -103080881 - HERVI LTR ERV1 -3657 3169 2583 2415 246 81 80 chr12 41201586 41202987 -103079502 - HERVI LTR ERV1 -5244 1405 3 * 2354 116 156 8 chr12 41203002 41203476 -103079013 - LTR10A LTR ERV1 -64 545 2 333 304 62 17 chr12 41203898 41204191 -103078298 + L1ME LINE L1 5353 5658 -463 2315 89 0 22 chr12 41204191 41204504 -103077985 + AluY SINE Alu 1 306 -5 251 273 91 28 chr12 41204505 41204648 -103077841 + L1ME LINE L1 5641 5792 -378 408 228 64 29 chr12 41205489 41205660 -103076829 - L1MC5 LINE L1 -50 7911 7735 19166 139 40 18 chr12 41205695 41209110 -103073379 + L1M1 LINE L1 19 3509 -4056 216 241 0 89 chr12 41209265 41209344 -103073145 + MIR SINE MIR 124 195 -67 22 0 0 0 chr12 41209506 41209528 -103072961 + AT_rich Low_complexity Low_complexity 1 22 0 239 295 45 36 chr12 41209865 41209977 -103072512 + MIR3 SINE MIR 85 197 -11 25 31 0 0 chr12 41210732 41210764 -103071725 + AT_rich Low_complexity Low_complexity 1 32 0 518 309 34 11 chr12 41212581 41212759 -103069730 + MIR SINE MIR 56 237 -25 391 384 50 0 chr12 41213610 41213852 -103068637 - MIR SINE MIR -7 255 2 3243 223 70 8 chr12 41214385 41215443 -103067046 + L1MA3 LINE L1 2253 3375 -2771 6874 138 13 2 chr12 41215587 41217653 -103064836 + L1MA3 LINE L1 4019 6107 -198 500 75 12 0 chr12 41217871 41217951 -103064538 + L1MA1 LINE L1 6222 6302 0 1915 167 10 0 chr12 41218101 41218406 -103064083 - AluJb SINE Alu -4 308 1 247 179 0 36 chr12 41219337 41219393 -103063096 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1215 340 43 28 chr12 41219466 41220422 -103062067 - ERVL LTR ERVL -3173 2591 1622 1081 189 76 76 chr12 41220836 41220971 -103061518 + MER2 DNA MER2_type 1 135 -209 1948 155 3 7 chr12 41220971 41221280 -103061209 - AluJo SINE Alu -4 308 1 1081 189 76 76 chr12 41221280 41221488 -103061001 + MER2 DNA MER2_type 134 344 0 300 161 18 0 chr12 41222182 41222238 -103060251 - LTR67 LTR ERVL -17 540 484 230 256 51 0 chr12 41222238 41222256 -103060233 - MLT1K LTR MaLR -15 569 492 226 346 90 0 chr12 41223019 41223097 -103059392 - MER5B DNA MER1_type 0 178 94 260 239 130 22 chr12 41223112 41223204 -103059285 - MER91C DNA MER1_type -22 118 17 354 294 152 68 chr12 41225440 41225680 -103056809 + L3 LINE CR1 293 564 -1013 3188 122 32 14 chr12 41225680 41226182 -103056307 + MER9 LTR ERVK 1 511 0 354 294 152 68 chr12 41226182 41226237 -103056252 + L3 LINE CR1 564 613 -964 346 377 181 4 chr12 41226293 41226574 -103055915 - L2 LINE L2 -9 3263 2933 38 51 0 0 chr12 41226622 41226681 -103055808 + AT_rich Low_complexity Low_complexity 1 59 0 287 227 45 0 chr12 41227224 41227378 -103055111 + (CA)n Simple_repeat Simple_repeat 2 162 0 361 222 34 106 chr12 41227586 41227714 -103054775 + MLT1E1 LTR MaLR 98 234 -359 746 201 29 17 chr12 41227714 41227799 -103054690 - L1PB4 LINE L1 0 6156 6073 2184 118 27 18 chr12 41227799 41228130 -103054359 + MER1B DNA MER1_type 1 334 -3 746 201 29 17 chr12 41228130 41228218 -103054271 - L1PB4 LINE L1 -83 6073 5981 361 222 34 106 chr12 41228218 41228323 -103054166 + MLT1E1 LTR MaLR 234 408 -185 721 167 14 0 chr12 41228324 41228462 -103054027 - MER41B LTR ERV1 0 635 496 3041 148 8 4 chr12 41228630 41229151 -103053338 - MER41B LTR ERV1 -109 526 4 718 194 31 31 chr12 41229182 41229342 -103053147 + MLT1E1 LTR MaLR 495 654 0 1232 140 0 0 chr12 41229626 41229826 -103052663 + L1PB1 LINE L1 1 200 -6663 9256 98 28 8 chr12 41229828 41231755 -103050734 + L1PB1 LINE L1 636 2760 -4103 6243 153 46 4 chr12 41231738 41233411 -103049078 + L1PB1 LINE L1 5111 6865 -2 * 24 0 0 0 chr12 41233411 41233435 -103049054 + AT_rich Low_complexity Low_complexity 1 24 0 216 333 40 0 chr12 41233613 41233688 -103048801 - L2 LINE L2 -558 2756 2679 256 164 55 0 chr12 41233706 41233761 -103048728 - L1MA7 LINE L1 -8 6283 6226 440 198 123 130 chr12 41233996 41234320 -103048169 - LTR37A LTR ERV1 -21 405 84 1985 97 86 0 chr12 41234391 41234670 -103047819 - AluSg SINE Alu -7 303 1 3775 166 24 24 chr12 41234741 41235463 -103047026 - MER50 LTR ERV1 -12 722 1 362 328 57 16 chr12 41236317 41236439 -103046050 - L2 LINE L2 -8 3264 3138 22 0 0 0 chr12 41236974 41236996 -103045493 + AT_rich Low_complexity Low_complexity 1 22 0 395 301 51 32 chr12 41237247 41237463 -103045026 - LTR33 LTR ERVL 0 521 302 749 243 192 5 chr12 41237593 41237807 -103044682 + MIR SINE MIR 6 259 -3 329 271 127 25 chr12 41238103 41238221 -103044268 + MLT1K LTR MaLR 293 422 -166 2549 165 31 0 chr12 41238283 41238696 -103043793 - MSTB LTR MaLR 0 426 1 182 212 167 15 chr12 41239006 41239072 -103043417 - MIR SINE MIR -89 173 98 2232 123 0 0 chr12 41239072 41239373 -103043116 + AluSg1 SINE Alu 1 301 -8 2159 108 24 0 chr12 41239495 41239792 -103042697 + AluSp SINE Alu 1 304 -9 237 306 12 17 chr12 41239926 41240099 -103042390 + (TA)n Simple_repeat Simple_repeat 1 172 0 221 364 125 0 chr12 41240440 41240528 -103041961 - L2 LINE L2 0 3272 3174 2243 122 0 51 chr12 41241535 41241889 -103040600 - MER1B DNA MER1_type -1 336 1 223 141 16 141 chr12 41242091 41242155 -103040334 + MIR3 SINE MIR 144 199 -9 871 131 22 7 chr12 41243175 41243312 -103039177 - AluJo SINE Alu -173 139 1 22 35 0 0 chr12 41244583 41244612 -103037877 + AT_rich Low_complexity Low_complexity 1 29 0 676 181 68 17 chr12 41245339 41245516 -103036973 - MER53 DNA DNA -1 188 3 896 101 0 8 chr12 41246217 41246383 -103036106 + AluYa5 SINE Alu 155 319 0 2294 117 114 5 chr12 41246535 41246921 -103035568 + MSTA LTR MaLR 1 428 0 30 27 0 0 chr12 41247086 41247123 -103035366 + AT_rich Low_complexity Low_complexity 1 37 0 1417 149 64 73 chr12 41247984 41248312 -103034177 - MER2 DNA MER2_type -12 333 9 481 255 69 7 chr12 41248314 41248459 -103034030 - MIR SINE MIR -6 256 103 452 317 48 43 chr12 41250159 41250345 -103032144 - MIR3 SINE MIR -12 196 10 14978 179 21 11 chr12 41250800 41251717 -103030772 - L1PB1 LINE L1 -1 6866 5960 2194 121 3 3 chr12 41251717 41252022 -103030467 - AluSc SINE Alu -4 305 1 14978 179 21 11 chr12 41252022 41254991 -103027498 - L1PB1 LINE L1 -907 5960 2657 2048 138 7 0 chr12 41254991 41255288 -103027201 - AluY SINE Alu -12 299 1 14978 179 21 11 chr12 41255288 41257329 -103025160 - L1PB1 LINE L1 -4210 2657 639 1134 157 0 0 chr12 41257327 41257524 -103024965 - L1PB1 LINE L1 -6666 197 1 * 2085 137 0 0 chr12 41257613 41257913 -103024576 + AluSc SINE Alu 1 300 -9 287 221 13 26 chr12 41258121 41258198 -103024291 + MLT1J2 LTR MaLR 345 420 -30 21 0 0 0 chr12 41258835 41258856 -103023633 + AT_rich Low_complexity Low_complexity 1 21 0 391 384 54 17 chr12 41259533 41259996 -103022493 - L2 LINE L2 -404 2910 2431 522 289 91 45 chr12 41260042 41260395 -103022094 + MLT1A2 LTR MaLR 6 374 0 345 280 67 36 chr12 41260406 41260599 -103021890 - L2 LINE L2 -931 2383 2185 2730 248 80 70 chr12 41260624 41261974 -103020515 - L2 LINE L2 -1 3312 1956 2293 86 3 7 chr12 41261995 41262297 -103020192 + AluY SINE Alu 1 301 -10 2307 228 42 19 chr12 41262306 41262876 -103019613 - MER119 DNA MER1_type 0 583 1 312 263 10 30 chr12 41263047 41263146 -103019343 - L2 LINE L2 -1431 1883 1787 485 238 59 123 chr12 41263871 41263957 -103018532 + L2 LINE L2 2995 3085 -228 2149 163 75 5 chr12 41263957 41264355 -103018134 + MSTB LTR MaLR 1 426 0 485 238 59 123 chr12 41264355 41264609 -103017880 + L2 LINE L2 3085 3313 0 335 226 54 54 chr12 41265763 41265856 -103016633 - L1MC2 LINE L1 -28 6316 6224 1365 143 0 0 chr12 41265887 41266111 -103016378 + L1 LINE L1 3348 3571 -2575 2122 147 16 0 chr12 41266114 41266488 -103016001 + L1 LINE L1 3454 3833 -2313 289 79 5 5 chr12 41266502 41266705 -103015784 + AluSp SINE Alu 1 298 -5 251 266 0 0 chr12 41266708 41266772 -103015717 + L1 LINE L1 3841 3904 -2242 * 5121 174 29 18 chr12 41266769 41267751 -103014738 + L1 LINE L1 4315 5312 -834 2112 112 7 0 chr12 41267751 41268038 -103014451 + AluSg SINE Alu 1 289 -21 5121 174 29 18 chr12 41268038 41268132 -103014357 + L1 LINE L1 5312 5403 -743 230 130 65 0 chr12 41268139 41268185 -103014304 - L1MC2 LINE L1 -2517 5525 5477 349 243 19 19 chr12 41268246 41268353 -103014136 + GA-rich Low_complexity Low_complexity 1 107 0 1765 151 55 27 chr12 41268406 41268771 -103013718 + THE1C LTR MaLR 1 375 0 321 26 0 0 chr12 41269057 41269095 -103013394 + (TA)n Simple_repeat Simple_repeat 1 38 0 395 253 68 39 chr12 41270181 41270462 -103012027 + L1M4 LINE L1 4423 4711 -1435 255 152 0 0 chr12 41270493 41270539 -103011950 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 24 0 0 0 chr12 41270539 41270563 -103011926 + AT_rich Low_complexity Low_complexity 1 24 0 1265 224 59 11 chr12 41271407 41271693 -103010796 + AluJo SINE Alu 1 300 -12 732 157 20 169 chr12 41271794 41272042 -103010447 + AluJb SINE Alu 1 211 -101 2226 117 0 0 chr12 41272146 41272453 -103010036 + AluSg SINE Alu 1 307 -3 1384 205 85 20 chr12 41273080 41273421 -103009068 + MLT1A1 LTR MaLR 2 364 -1 247 127 64 9 chr12 41273445 41273555 -103008934 + (TA)n Simple_repeat Simple_repeat 2 117 0 2663 149 0 48 chr12 41273881 41274377 -103008112 - L1MA7 LINE L1 -386 5905 5434 272 118 59 0 chr12 41274379 41274430 -103008059 + L1MA7 LINE L1 6237 6290 -1 222 171 0 0 chr12 41274598 41274639 -103007850 + CT-rich Low_complexity Low_complexity 3 43 0 407 318 110 12 chr12 41275483 41275656 -103006833 + L2 LINE L2 3083 3272 0 312 91 0 0 chr12 41275784 41275828 -103006661 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 0 0 0 chr12 41276592 41276620 -103005869 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 41276934 41276959 -103005530 + AT_rich Low_complexity Low_complexity 1 25 0 232 347 54 12 chr12 41278621 41278786 -103003703 - MIR SINE MIR -65 143 20 2244 113 0 0 chr12 41279082 41279383 -103003106 + AluSg SINE Alu 1 301 -9 393 309 41 0 chr12 41279455 41279578 -103002911 - MIR SINE MIR -88 174 47 232 281 0 0 chr12 41279955 41280012 -103002477 + Charlie2 DNA MER1_type 25 81 -2701 377 247 10 41 chr12 41280045 41280142 -103002347 - L1MC/D LINE L1 -2205 5603 5510 270 153 0 0 chr12 41281296 41281355 -103001134 + T-rich Low_complexity Low_complexity 1 59 0 1010 25 0 0 chr12 41281358 41281478 -103001011 - L1PA4 LINE L1 -3 6152 6033 21 82 0 0 chr12 41283057 41283106 -102999383 + AT_rich Low_complexity Low_complexity 1 49 0 226 214 0 0 chr12 41283503 41283545 -102998944 + (TGG)n Simple_repeat Simple_repeat 2 43 0 2348 108 0 0 chr12 41284523 41284830 -102997659 + AluSc SINE Alu 1 307 -2 270 0 0 0 chr12 41285254 41285284 -102997205 + (TA)n Simple_repeat Simple_repeat 1 30 0 846 260 154 9 chr12 41285535 41285873 -102996616 + MLT1H1 LTR MaLR 1 387 -168 44 56 0 0 chr12 41286924 41286996 -102995493 + AT_rich Low_complexity Low_complexity 1 72 0 227 235 265 10 chr12 41287238 41287336 -102995153 - MIR SINE MIR -56 206 84 2350 50 7 0 chr12 41287422 41287704 -102994785 + AluY SINE Alu 24 307 -4 608 275 44 6 chr12 41287858 41288018 -102994471 - MER5B DNA MER1_type -12 166 1 2108 107 0 4 chr12 41288488 41288797 -102993692 - AluY SINE Alu 0 308 1 2178 111 0 29 chr12 41291275 41291582 -102990907 - AluSg SINE Alu -12 298 1 38942 48 1 10 chr12 41292618 41297519 -102984970 - L1P LINE L1 -1274 4872 13 849 231 58 0 chr12 41297648 41297891 -102984598 + L1 LINE L1 2680 2936 -3210 2515 249 117 25 chr12 41297892 41299893 -102982596 - L1 LINE L1 -3365 3017 971 829 157 0 39 chr12 41299893 41300046 -102982443 - MSTB LTR MaLR -279 147 1 599 237 40 109 chr12 41300772 41301093 -102981396 + AluJo SINE Alu 1 299 -3 3047 99 31 179 chr12 41301461 41302196 -102980293 + MER51A LTR ERV1 1 642 -15 2101 135 0 0 chr12 41302605 41302909 -102979580 - AluSx SINE Alu -8 304 1 31 0 0 0 chr12 41302943 41302974 -102979515 + AT_rich Low_complexity Low_complexity 1 31 0 1847 105 54 37 chr12 41303330 41303625 -102978864 - AluSg SINE Alu 0 310 11 319 172 81 0 chr12 41304329 41304416 -102978073 + AluJb SINE Alu 85 178 -124 2054 106 7 17 chr12 41305206 41305508 -102976981 - AluY SINE Alu -12 299 1 315 314 35 0 chr12 41306031 41306117 -102976372 + L3 LINE CR1 1393 1481 -96 1688 195 0 10 chr12 41306976 41307268 -102975221 + AluJo SINE Alu 1 289 -23 23 0 0 0 chr12 41308193 41308216 -102974273 + AT_rich Low_complexity Low_complexity 1 23 0 386 316 62 34 chr12 41308969 41309146 -102973343 - MIR3 SINE MIR -11 197 16 22 0 0 0 chr12 41309430 41309452 -102973037 + AT_rich Low_complexity Low_complexity 1 22 0 217 241 0 89 chr12 41309613 41309692 -102972797 - MIR SINE MIR -67 195 124 270 56 0 0 chr12 41310030 41310066 -102972423 + (TG)n Simple_repeat Simple_repeat 1 36 0 2595 272 109 28 chr12 41310932 41312095 -102970394 - L2 LINE L2 -1223 2091 835 1331 129 214 15 chr12 41312247 41312518 -102969971 + L1MC3 LINE L1 5445 5769 -2226 4414 179 111 30 chr12 41312519 41313535 -102968954 + L1MC3 LINE L1 6678 7776 -9 280 288 54 9 chr12 41313977 41314088 -102968401 - L2 LINE L2 -5 3308 3193 698 203 0 30 chr12 41314772 41314905 -102967584 + FLAM_C SINE Alu 3 131 -12 38893 47 5 8 chr12 41316068 41320954 -102961535 + L1P LINE L1 2 4872 -1274 2178 111 0 29 chr12 41321990 41322297 -102960192 + AluSg SINE Alu 1 298 -12 2109 107 0 4 chr12 41324775 41325084 -102957405 + AluY SINE Alu 1 308 0 608 275 44 6 chr12 41325553 41325713 -102956776 + MER5B DNA MER1_type 1 166 -12 2350 50 7 0 chr12 41325867 41326149 -102956340 - AluY SINE Alu -4 307 24 242 246 305 8 chr12 41326235 41326353 -102956136 + MIR SINE MIR 84 236 -26 190 403 0 0 chr12 41328445 41328507 -102953982 + L2 LINE L2 3125 3186 -86 548 296 61 38 chr12 41328605 41328860 -102953629 + L1MC/D LINE L1 3804 4052 -2094 823 212 12 18 chr12 41328860 41329025 -102953464 + FRAM SINE Alu 1 164 -2 548 296 61 38 chr12 41329025 41329912 -102952577 + L1MC/D LINE L1 4052 5051 -1095 329 281 31 23 chr12 41329952 41330080 -102952409 + L1MC/D LINE L1 5122 5250 -896 307 288 65 6 chr12 41330101 41330271 -102952218 + L1MC/D LINE L1 5309 5488 -2320 2465 31 0 0 chr12 41330341 41330635 -102951854 - L1PA4 LINE L1 -2 6153 5860 292 263 26 174 chr12 41330944 41331134 -102951355 + L2 LINE L2 3109 3270 -2 291 326 37 37 chr12 41331142 41331277 -102951212 + L3b LINE CR1 1253 1387 -196 587 261 114 0 chr12 41332343 41332527 -102949962 + MIR SINE MIR 2 206 -56 42 89 0 0 chr12 41332527 41332639 -102949850 + AT_rich Low_complexity Low_complexity 1 112 0 1750 204 53 71 chr12 41333813 41333930 -102948559 + MLT1D LTR MaLR 1 119 -386 2486 122 2 17 chr12 41333930 41334332 -102948157 + L1MA5A LINE L1 5901 6296 -1 1750 204 53 71 chr12 41334332 41334724 -102947765 + MLT1D LTR MaLR 119 501 -4 2050 165 44 0 chr12 41334932 41335337 -102947152 + L1MA8 LINE L1 5853 6275 -16 2273 93 28 0 chr12 41335378 41335669 -102946820 - AluSc SINE Alu -10 299 1 14923 122 27 10 chr12 41335745 41338120 -102944369 + Tigger1 DNA MER2_type 1 2417 -1 1620 173 13 51 chr12 41338455 41338583 -102943906 + AluJo SINE Alu 1 132 -180 225 0 0 0 chr12 41338583 41338608 -102943881 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1620 173 13 51 chr12 41338608 41338792 -102943697 + AluJo SINE Alu 132 301 -11 21 36 0 0 chr12 41340092 41340120 -102942369 + AT_rich Low_complexity Low_complexity 1 28 0 533 330 101 68 chr12 41341277 41341780 -102940709 + L2 LINE L2 1802 2321 -993 221 348 43 26 chr12 41342688 41342803 -102939686 - L2 LINE L2 -2 3311 3195 1643 260 109 47 chr12 41342861 41343114 -102939375 + L2 LINE L2 2400 2636 -677 476 272 59 24 chr12 41343114 41343283 -102939206 + MER69A DNA AcHobo 3 177 0 1643 260 109 47 chr12 41343283 41343869 -102938620 + L2 LINE L2 2636 3301 -12 187 250 155 103 chr12 41344284 41344400 -102938089 - MIR SINE MIR -70 138 17 319 306 145 7 chr12 41344652 41344956 -102937533 + L1MC4a LINE L1 4525 4870 -1276 1372 217 51 51 chr12 41345048 41345421 -102937068 + MLT1A2 LTR MaLR 2 374 0 338 296 106 37 chr12 41345653 41346166 -102936323 + L1MC4a LINE L1 5282 5849 -297 21910 146 38 10 chr12 41347236 41351083 -102931406 + L1MA2 LINE L1 17 3971 -3594 6370 146 19 7 chr12 41351260 41353368 -102929121 + L1MA2 LINE L1 5596 7719 -4 23 0 0 0 chr12 41353655 41353678 -102928811 + AT_rich Low_complexity Low_complexity 1 23 0 34 65 0 0 chr12 41353716 41353778 -102928711 + AT_rich Low_complexity Low_complexity 1 62 0 335 323 30 23 chr12 41354740 41354873 -102927616 + MIR SINE MIR 26 159 -103 394 284 269 47 chr12 41354874 41355023 -102927466 - L2 LINE L2 0 3313 3198 2453 55 0 16 chr12 41355023 41355335 -102927154 + AluY SINE Alu 1 307 -4 394 284 269 47 chr12 41355335 41355611 -102926878 - L2 LINE L2 -115 3198 2798 2032 298 135 47 chr12 41355815 41357293 -102925196 - L2 LINE L2 -560 2754 1147 435 282 34 27 chr12 41357615 41357764 -102924725 + MER5B DNA MER1_type 28 177 -1 2539 119 22 44 chr12 41358369 41358823 -102923666 + MER65A LTR ERV1 2 445 0 24 0 0 0 chr12 41358865 41358889 -102923600 + AT_rich Low_complexity Low_complexity 1 24 0 237 344 64 38 chr12 41359143 41359300 -102923189 - MIR SINE MIR -73 189 29 22 0 0 0 chr12 41360154 41360176 -102922313 + AT_rich Low_complexity Low_complexity 1 22 0 313 205 46 133 chr12 41360191 41360342 -102922147 - MIR SINE MIR 0 262 125 774 209 6 6 chr12 41360433 41360591 -102921898 + Tigger1 DNA MER2_type 1 158 -2260 * 1169 130 48 5 chr12 41360580 41360787 -102921702 + Tigger1 DNA MER2_type 2203 2418 0 6739 137 35 22 chr12 41361024 41361979 -102920510 + Tigger3b DNA MER2_type 1 976 -2052 2243 95 3 0 chr12 41361979 41362273 -102920216 - AluSc SINE Alu -14 295 1 6739 137 35 22 chr12 41362273 41362533 -102919956 + Tigger3b DNA MER2_type 976 1231 0 348 155 17 0 chr12 41362553 41362611 -102919878 + MLT2F LTR ERVL 1 59 -604 413 128 139 23 chr12 41362658 41362744 -102919745 + MLT2F LTR ERVL 565 660 -3 22 0 0 0 chr12 41363727 41363749 -102918740 + AT_rich Low_complexity Low_complexity 1 22 0 3267 149 68 102 chr12 41366065 41366265 -102916224 + LTR39 LTR ERV1 1 206 -577 2140 131 7 0 chr12 41366265 41366563 -102915926 + AluSq SINE Alu 1 300 -13 3267 149 68 102 chr12 41366563 41367083 -102915406 + LTR39 LTR ERV1 206 692 -91 2069 93 65 0 chr12 41367083 41367361 -102915128 - AluSq SINE Alu -17 296 1 3267 149 68 102 chr12 41367361 41367449 -102915040 + LTR39 LTR ERV1 692 782 -1 269 311 114 23 chr12 41367485 41367617 -102914872 + L2 LINE L2 2918 3061 -211 23 33 0 0 chr12 41367791 41367821 -102914668 + AT_rich Low_complexity Low_complexity 1 30 0 1784 176 0 3 chr12 41367887 41368176 -102914313 + AluJo SINE Alu 1 288 -24 198 0 0 0 chr12 41368182 41368204 -102914285 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 208 305 125 23 chr12 41368214 41368342 -102914147 - MIR3 SINE MIR -64 144 4 198 305 32 42 chr12 41369176 41369271 -102913218 + MIR SINE MIR 20 113 -95 245 335 31 56 chr12 41370283 41370444 -102912045 - MIR SINE MIR -78 184 28 2122 138 0 0 chr12 41370687 41370983 -102911506 + AluSx SINE Alu 3 298 -14 2400 95 0 0 chr12 41371115 41371411 -102911078 + AluSx SINE Alu 3 298 -14 599 205 18 0 chr12 41372913 41373025 -102909464 + MER94 DNA DNA 1 114 -20 398 321 58 22 chr12 41373587 41373811 -102908678 + L2 LINE L2 3075 3306 -7 342 296 222 24 chr12 41374191 41374411 -102908078 + MIR SINE MIR 1 259 -3 22 0 0 0 chr12 41374808 41374830 -102907659 + AT_rich Low_complexity Low_complexity 1 22 0 2231 53 11 25 chr12 41374911 41375193 -102907296 + AluY SINE Alu 21 298 -13 36 0 0 0 chr12 41375487 41375523 -102906966 + AT_rich Low_complexity Low_complexity 1 36 0 307 268 37 0 chr12 41375982 41376064 -102906425 + MER102b DNA MER1_type 246 330 -11 2350 108 0 3 chr12 41376444 41376758 -102905731 + AluSq SINE Alu 1 313 0 2282 85 0 3 chr12 41377246 41377539 -102904950 - AluSx SINE Alu -20 292 1 539 156 0 115 chr12 41377862 41377984 -102904505 + MER2 DNA MER2_type 1 108 -237 372 100 100 0 chr12 41377985 41378045 -102904444 + MER4A LTR ERV1 33 98 -566 1712 132 5 77 chr12 41378045 41378417 -102904072 + MER4A LTR ERV1 261 664 0 546 133 64 92 chr12 41378581 41378754 -102903735 - MER33 DNA MER1_type -1 323 156 427 199 248 7 chr12 41378844 41378985 -102903504 - MER33 DNA MER1_type -149 175 1 347 306 26 52 chr12 41380089 41380282 -102902207 + L1ME LINE L1 5562 5749 -372 2399 71 0 0 chr12 41380488 41380783 -102901706 + AluY SINE Alu 1 295 -16 192 362 131 39 chr12 41381669 41381771 -102900718 - L2 LINE L2 -456 2858 2767 1401 166 38 25 chr12 41381771 41382091 -102900398 + MER33 DNA MER1_type 1 324 0 192 362 131 39 chr12 41382091 41382619 -102899870 - L2 LINE L2 -547 2767 2289 8045 86 6 1 chr12 41382619 41383685 -102898804 + MER11C LTR ERVK 1 1071 0 192 362 131 39 chr12 41383685 41383877 -102898612 - L2 LINE L2 -1025 2289 2116 2068 134 7 0 chr12 41383877 41384184 -102898305 + AluSp SINE Alu 1 309 -4 192 362 131 39 chr12 41384184 41384202 -102898287 - L2 LINE L2 -1198 2116 1939 794 273 32 5 chr12 41384250 41384437 -102898052 - MIR SINE MIR -52 210 19 1898 132 36 3 chr12 41385112 41385415 -102897074 - AluSq SINE Alu 0 313 1 2013 205 89 0 chr12 41386677 41387150 -102895339 + MER34 LTR ERV1 27 541 -1 321 26 0 0 chr12 41387151 41387189 -102895300 + (CA)n Simple_repeat Simple_repeat 2 39 0 365 249 76 103 chr12 41388441 41388579 -102893910 - MIR SINE MIR -17 245 112 2242 147 39 18 chr12 41388579 41389020 -102893469 + LTR7 LTR ERV1 1 450 0 365 249 76 103 chr12 41389020 41389066 -102893423 - MIR SINE MIR -150 112 66 2247 72 0 44 chr12 41389216 41389534 -102892955 - AluY SINE Alu -7 304 1 1551 194 14 28 chr12 41390550 41390839 -102891650 - AluJo SINE Alu -27 285 1 192 341 133 7 chr12 41393326 41393461 -102889028 + MIR3 SINE MIR 42 193 -15 884 265 215 19 chr12 41393526 41394001 -102888488 + L2 LINE L2 1447 2014 -1300 2478 58 10 10 chr12 41394582 41394892 -102887597 + AluY SINE Alu 1 310 -1 2113 106 0 0 chr12 41394910 41395193 -102887296 + AluSx SINE Alu 20 302 -10 2234 70 40 7 chr12 41395509 41395810 -102886679 - AluY SINE Alu 0 311 1 465 235 80 31 chr12 41396065 41396107 -102886382 - MER102b DNA MER1_type -2152 265 227 340 101 101 114 chr12 41396107 41396186 -102886303 + MADE1 DNA Mariner 3 80 0 465 235 80 31 chr12 41396186 41396305 -102886184 - MER102b DNA MER1_type -2190 227 96 729 271 0 0 chr12 41396823 41396993 -102885496 + MER41D LTR ERV1 387 556 -1 24 0 0 0 chr12 41397178 41397202 -102885287 + AT_rich Low_complexity Low_complexity 1 24 0 1923 92 136 27 chr12 41397679 41398017 -102884472 - MER51B LTR ERV1 -2 375 1 5204 246 61 39 chr12 41398058 41399349 -102883140 + L1M4b LINE L1 102 1445 -5514 369 0 0 0 chr12 41399349 41399390 -102883099 + (CA)n Simple_repeat Simple_repeat 2 42 0 5204 246 61 39 chr12 41399390 41400340 -102882149 + L1M4b LINE L1 1445 2373 -4586 608 285 5 15 chr12 41400430 41400630 -102881859 + L2 LINE L2 1489 1686 -1628 27 29 0 0 chr12 41400967 41401001 -102881488 + AT_rich Low_complexity Low_complexity 1 34 0 520 293 163 30 chr12 41401162 41401432 -102881057 - L2 LINE L2 0 3313 3008 426 228 11 11 chr12 41401446 41401538 -102880951 - MIR SINE MIR -115 147 56 1018 190 22 0 chr12 41401986 41402170 -102880319 - MER5A DNA MER1_type 0 189 2 2346 106 3 0 chr12 41502505 41502816 -102779673 - AluSx SINE Alu 0 312 1 7538 34 0 0 chr12 41504651 41506310 -102776179 + L1PA4 LINE L1 4495 6155 0 2199 111 0 3 chr12 41507134 41507431 -102775058 + AluSx SINE Alu 1 296 -16 4574 121 25 1 chr12 41508055 41508829 -102773660 + Tigger1 DNA MER2_type 1421 2212 -206 2184 151 23 25 chr12 41509984 41510381 -102772108 + MSTD LTR MaLR 1 396 0 34 55 0 0 chr12 41511006 41511061 -102771428 + AT_rich Low_complexity Low_complexity 1 55 0 372 301 108 15 chr12 41511301 41511504 -102770985 - L1ME4a LINE L1 -53 6068 5847 1969 152 7 0 chr12 41511514 41511804 -102770685 + AluSx SINE Alu 7 298 -14 565 189 106 53 chr12 41513372 41513709 -102768780 - MLT1A2 LTR MaLR 0 457 4 1655 244 30 8 chr12 41513810 41514211 -102768278 - L1M3c LINE L1 -5721 420 11 350 296 80 46 chr12 41514894 41515330 -102767159 + HAL1 LINE L1 803 1253 -1254 305 343 130 11 chr12 41515776 41516239 -102766250 + HAL1 LINE L1 1405 1922 -585 2362 121 19 22 chr12 41516329 41516694 -102765795 - THE1B LTR MaLR 0 364 1 27 0 0 0 chr12 41516711 41516738 -102765751 + AT_rich Low_complexity Low_complexity 1 27 0 1223 232 121 49 chr12 41516816 41517264 -102765225 + MLT2B1 LTR ERVL 1 480 -40 260 223 45 0 chr12 41517267 41517379 -102765110 + (TATATG)n Simple_repeat Simple_repeat 3 119 0 246 62 0 0 chr12 41517442 41517474 -102765015 + (TA)n Simple_repeat Simple_repeat 1 32 0 256 104 21 21 chr12 41517477 41517525 -102764964 + MLT2D LTR ERVL 367 414 0 23510 58 194 0 chr12 41518484 41522016 -102760473 + L1P LINE L1 4 4220 -1926 1335 235 82 22 chr12 41522504 41522955 -102759534 - L1ME1 LINE L1 -4 6162 5685 395 297 27 0 chr12 41522998 41523109 -102759380 + MIR3 SINE MIR 85 198 -10 1242 251 74 20 chr12 41523354 41523800 -102758689 - LTR38 LTR ERV1 0 556 87 2221 106 3 0 chr12 41523837 41524148 -102758341 - AluSq SINE Alu -1 312 1 221 306 148 79 chr12 41524443 41524835 -102757654 - L2 LINE L2 -545 2769 2351 227 286 0 0 chr12 41525193 41525256 -102757233 + MIR SINE MIR 200 262 0 300 101 14 29 chr12 41526749 41526818 -102755671 + (TTTTA)n Simple_repeat Simple_repeat 4 71 0 2174 100 0 4 chr12 41527670 41527974 -102754515 + AluSg1 SINE Alu 1 303 0 842 159 0 0 chr12 41528119 41528251 -102754238 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr12 41528390 41528411 -102754078 + AT_rich Low_complexity Low_complexity 1 21 0 331 277 245 16 chr12 41528755 41528939 -102753550 + MIR SINE MIR 25 250 -12 22 35 0 0 chr12 41529192 41529221 -102753268 + AT_rich Low_complexity Low_complexity 1 29 0 354 98 0 0 chr12 41530483 41530534 -102751955 + (TG)n Simple_repeat Simple_repeat 2 52 0 300 222 62 0 chr12 41531096 41531177 -102751312 - MLT1J LTR MaLR -108 403 318 2181 147 61 20 chr12 41531242 41531651 -102750838 - MSTB1 LTR MaLR 0 432 7 438 285 186 10 chr12 41531658 41531851 -102750638 - MLT1J LTR MaLR -282 229 3 387 0 0 0 chr12 41532502 41532545 -102749944 + (TG)n Simple_repeat Simple_repeat 2 44 0 844 273 194 15 chr12 41533235 41533642 -102748847 - MLT1J LTR MaLR -31 480 1 184 329 41 27 chr12 41534500 41534573 -102747916 + L2 LINE L2 2982 3055 -258 1815 258 102 15 chr12 41534573 41535111 -102747378 + MLT1E LTR MaLR 1 585 -8 308 264 146 35 chr12 41535730 41535874 -102746615 + MER5A DNA MER1_type 30 189 0 25 0 0 0 chr12 41535894 41535919 -102746570 + AT_rich Low_complexity Low_complexity 1 25 0 986 148 16 44 chr12 41535925 41536108 -102746381 - AluJo SINE Alu -12 300 123 21 0 0 0 chr12 41537125 41537146 -102745343 + AT_rich Low_complexity Low_complexity 1 21 0 214 223 124 83 chr12 41537325 41537446 -102745043 - L3 LINE CR1 -1 1576 1451 452 243 150 65 chr12 41537694 41538052 -102744437 - MLT1E1 LTR MaLR -218 436 1 2369 70 3 10 chr12 41538413 41538715 -102743774 - AluY SINE Alu -11 300 1 212 68 0 68 chr12 41538982 41539026 -102743463 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 706 211 0 8 chr12 41539030 41539163 -102743326 - FLAM_A SINE Alu 0 133 2 2062 102 7 10 chr12 41539471 41539774 -102742715 + AluSx SINE Alu 1 302 -10 902 310 46 3 chr12 41539956 41540240 -102742249 - LTR33 LTR ERVL -223 298 3 2066 129 7 0 chr12 41540394 41540688 -102741801 - AluSg SINE Alu -14 296 1 24 32 0 0 chr12 41543321 41543352 -102739137 + AT_rich Low_complexity Low_complexity 1 31 0 213 200 40 0 chr12 41543509 41543559 -102738930 + (TATG)n Simple_repeat Simple_repeat 4 55 0 22 0 0 0 chr12 41543854 41543876 -102738613 + AT_rich Low_complexity Low_complexity 1 22 0 270 203 159 0 chr12 41543878 41543947 -102738542 - MIR SINE MIR -120 142 63 1300 249 70 38 chr12 41543954 41544400 -102738089 - LTR40c LTR ERVL -5 460 1 578 304 100 7 chr12 41546565 41546835 -102735654 - L2 LINE L2 -553 2761 2467 205 275 225 35 chr12 41547190 41547332 -102735157 - MIR3 SINE MIR -17 191 23 1789 134 44 13 chr12 41547780 41548078 -102734411 - AluSx SINE Alu -5 307 1 321 232 31 88 chr12 41548458 41548508 -102733981 + Charlie7 DNA MER1_type 2430 2481 -131 1998 159 6 37 chr12 41548508 41548861 -102733628 - MER2 DNA MER2_type 0 344 3 321 232 31 88 chr12 41548861 41549004 -102733485 + Charlie7 DNA MER1_type 2481 2612 0 1782 158 0 7 chr12 41550269 41550548 -102731941 - AluSx SINE Alu -22 290 14 1827 163 23 10 chr12 41553704 41554010 -102728479 - AluJb SINE Alu -2 310 1 2516 189 49 79 chr12 41554378 41555087 -102727402 - LTR8 LTR ERV1 0 691 4 2062 144 0 0 chr12 41555705 41556003 -102726486 - AluSx SINE Alu -14 298 1 440 221 87 16 chr12 41556797 41556924 -102725565 - MIR SINE MIR -56 206 71 2221 146 100 3 chr12 41557459 41557849 -102724640 - MSTA LTR MaLR 0 428 1 2300 55 55 3 chr12 41557933 41558224 -102724265 + AluY SINE Alu 1 306 -5 275 233 42 100 chr12 41558981 41559048 -102723441 - L1ME4a LINE L1 -29 6092 6033 2102 118 7 10 chr12 41559048 41559345 -102723144 + AluSx SINE Alu 1 296 -16 275 233 42 100 chr12 41559345 41559397 -102723092 - L1ME4a LINE L1 -88 6033 5980 25 31 0 0 chr12 41559426 41559458 -102723031 + AT_rich Low_complexity Low_complexity 1 32 0 217 214 18 18 chr12 41559861 41559917 -102722572 - MER5C DNA MER1_type -201 123 68 224 273 18 0 chr12 41560025 41560080 -102722409 - MER5C DNA MER1_type -267 57 2 23 33 0 0 chr12 41560336 41560366 -102722123 + AT_rich Low_complexity Low_complexity 1 30 0 191 274 96 0 chr12 41560523 41560596 -102721893 - L2 LINE L2 -614 2700 2621 1650 190 3 0 chr12 41561794 41562105 -102720384 - AluSx SINE Alu 0 312 1 1358 169 0 5 chr12 41562863 41563076 -102719413 + AluJo SINE Alu 1 212 -100 196 179 0 71 chr12 41563134 41563190 -102719299 - L2 LINE L2 -332 2981 2930 427 203 0 0 chr12 41563355 41563429 -102719060 - MER2 DNA MER2_type 0 345 272 22 56 0 0 chr12 41563442 41563478 -102719011 + AT_rich Low_complexity Low_complexity 1 36 0 1363 172 26 4 chr12 41563489 41563721 -102718768 + AluJb SINE Alu 3 239 -73 1163 124 9 52 chr12 41563742 41563952 -102718537 - MER2 DNA MER2_type -139 206 6 2224 98 9 0 chr12 41564817 41565133 -102717356 - L1PA11 LINE L1 -1 6173 5855 516 83 6 10 chr12 41565134 41565231 -102717258 + L1PA11 LINE L1 5754 5849 -302 216 361 74 25 chr12 41565554 41565676 -102716813 - L2 LINE L2 -12 3260 3133 545 181 0 38 chr12 41566970 41567075 -102715414 + FLAM_A SINE Alu 10 110 -32 33 0 0 0 chr12 41567095 41567128 -102715361 + AT_rich Low_complexity Low_complexity 1 33 0 1599 107 27 0 chr12 41567186 41567410 -102715079 - MER30 DNA MER1_type 0 230 1 405 283 48 48 chr12 41567713 41567858 -102714631 - L2 LINE L2 0 3272 3128 534 222 70 65 chr12 41568040 41568225 -102714264 + MIR SINE MIR 20 205 -57 245 252 252 10 chr12 41568510 41568613 -102713876 - MER5A DNA MER1_type -22 167 40 660 234 0 72 chr12 41568639 41568806 -102713683 - FAM SINE Alu -19 156 2 187 268 0 0 chr12 41568807 41568848 -102713641 + MER5A DNA MER1_type 149 189 0 2100 121 13 0 chr12 41569616 41569914 -102712575 + AluSq SINE Alu 1 302 -11 26 0 0 0 chr12 41569914 41569940 -102712549 + AT_rich Low_complexity Low_complexity 1 26 0 1092 246 100 126 chr12 41571310 41572063 -102710426 + L2 LINE L2 1212 1944 -1370 557 237 9 0 chr12 41572102 41572216 -102710273 - MIR SINE MIR -69 193 79 334 313 62 22 chr12 41572454 41572633 -102709856 + L1M4b LINE L1 923 1108 -5334 1966 139 12 40 chr12 41572667 41572990 -102709499 - MER1B DNA MER1_type 0 339 26 299 204 0 19 chr12 41572990 41573044 -102709445 - MER1B DNA MER1_type -284 53 1 500 248 78 105 chr12 41573044 41573361 -102709128 + L1M4b LINE L1 1258 1561 -4979 1820 141 0 50 chr12 41573361 41573680 -102708809 - AluJo SINE Alu -9 303 1 500 248 78 105 chr12 41573680 41573772 -102708717 + L1M4b LINE L1 1561 1654 -4886 1361 220 20 30 chr12 41573782 41574086 -102708403 + AluJb SINE Alu 1 301 -11 245 159 0 0 chr12 41574094 41574138 -102708351 + L1M4b LINE L1 2764 2807 -3733 1929 185 98 20 chr12 41574172 41574380 -102708109 + MLT1D LTR MaLR 23 213 -292 2196 111 3 0 chr12 41574380 41574669 -102707820 - AluSx SINE Alu -16 296 7 1929 185 98 20 chr12 41574669 41574908 -102707581 + MLT1D LTR MaLR 213 505 0 1143 264 28 5 chr12 41574943 41575330 -102707159 + L1M4b LINE L1 2844 3239 -3301 207 156 0 0 chr12 41575445 41575477 -102707012 + GA-rich Low_complexity Low_complexity 2 33 0 402 271 181 8 chr12 41575831 41575964 -102706525 + MER5A DNA MER1_type 27 182 -7 1817 164 0 32 chr12 41576070 41576381 -102706108 - AluJo SINE Alu -11 301 1 1872 121 7 34 chr12 41576390 41576688 -102705801 - AluSx SINE Alu -21 291 2 1859 171 3 7 chr12 41576981 41577280 -102705209 + AluJb SINE Alu 3 300 -12 679 198 96 40 chr12 41578164 41578341 -102704148 + AluJo SINE Alu 119 305 -7 241 308 31 0 chr12 41579323 41579388 -102703101 - L2 LINE L2 -6 3307 3241 2395 49 0 55 chr12 41579775 41580101 -102702388 - AluY SINE Alu -3 308 1 450 264 40 85 chr12 41580273 41580474 -102702015 + L2 LINE L2 2823 3014 -299 2194 95 3 0 chr12 41580858 41581141 -102701348 + AluSx SINE Alu 1 284 -28 1035 152 0 0 chr12 41581141 41581319 -102701170 + (TA)n Simple_repeat Simple_repeat 2 179 0 270 176 0 0 chr12 41581319 41581370 -102701119 + (TATATG)n Simple_repeat Simple_repeat 5 55 0 269 219 0 62 chr12 41581371 41581467 -102701022 + L1MC4 LINE L1 6614 6703 -1339 21 0 0 0 chr12 41581467 41581488 -102701001 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr12 41582319 41582349 -102700140 + AT_rich Low_complexity Low_complexity 1 30 0 1631 177 50 0 chr12 41582470 41582752 -102699737 + AluJb SINE Alu 1 296 -16 245 275 14 0 chr12 41583402 41583471 -102699018 - MIR SINE MIR -6 256 187 439 321 60 24 chr12 41583777 41583945 -102698544 - MIR3 SINE MIR -5 203 30 225 0 0 0 chr12 41584619 41584644 -102697845 + (A)n Simple_repeat Simple_repeat 1 25 0 253 205 39 126 chr12 41585420 41585547 -102696942 + L1ME4a LINE L1 5802 5917 -204 1956 150 8 42 chr12 41585560 41585919 -102696570 + MER7A DNA MER2_type 2 346 0 2012 149 0 0 chr12 41585955 41586257 -102696232 + AluSx SINE Alu 1 302 -10 465 166 35 0 chr12 41586257 41586426 -102696063 + (TA)n Simple_repeat Simple_repeat 1 175 0 1546 178 7 18 chr12 41586529 41586805 -102695684 - AluJb SINE Alu -39 273 1 311 367 35 6 chr12 41587258 41587425 -102695064 + L2 LINE L2 124 295 -3019 828 216 113 30 chr12 41587425 41587656 -102694833 + MIR SINE MIR 2 251 -11 565 326 97 28 chr12 41587712 41588074 -102694415 + L2 LINE L2 359 745 -2569 1012 76 8 0 chr12 41588112 41588243 -102694246 + AluSp SINE Alu 1 132 -181 2323 90 0 10 chr12 41588246 41588557 -102693932 + AluSc SINE Alu 1 308 -1 1783 327 169 18 chr12 41588572 41589930 -102692559 + L2 LINE L2 1741 3313 0 190 324 99 9 chr12 41589998 41590109 -102692380 - L2 LINE L2 -28 3285 3165 394 336 75 0 chr12 41590247 41590393 -102692096 - MIR SINE MIR -86 176 20 189 0 0 0 chr12 41590477 41590498 -102691991 + (A)n Simple_repeat Simple_repeat 1 21 0 1966 131 6 34 chr12 41591135 41591456 -102691033 + AluSx SINE Alu 1 312 0 2042 127 7 3 chr12 41592204 41592503 -102689986 - AluSx SINE Alu -12 300 1 21 0 0 0 chr12 41593094 41593115 -102689374 + AT_rich Low_complexity Low_complexity 1 21 0 2237 88 0 0 chr12 41593232 41593516 -102688973 + AluSc SINE Alu 12 295 -14 517 207 107 0 chr12 41594103 41594224 -102688265 - MIR SINE MIR -6 256 123 215 295 0 39 chr12 41594361 41594439 -102688050 + GA-rich Low_complexity Low_complexity 1 75 0 363 250 243 29 chr12 41594477 41594611 -102687878 - MIR SINE MIR -77 185 21 761 173 0 15 chr12 41594611 41594744 -102687745 + FLAM_C SINE Alu 1 131 -2 2251 117 0 0 chr12 41594827 41595135 -102687354 + AluSq SINE Alu 1 308 -5 276 155 42 0 chr12 41595320 41595391 -102687098 + (TA)n Simple_repeat Simple_repeat 1 74 0 568 294 20 56 chr12 41596089 41596286 -102686203 + MIR SINE MIR 26 215 -47 352 268 165 19 chr12 41596605 41596926 -102685563 - L1ME4a LINE L1 -34 6087 5720 244 321 97 36 chr12 41596927 41597123 -102685366 - MIR SINE MIR -20 242 35 180 152 0 0 chr12 41597221 41597254 -102685235 + GA-rich Low_complexity Low_complexity 2 34 0 21 57 0 0 chr12 41597543 41597578 -102684911 + AT_rich Low_complexity Low_complexity 1 35 0 710 165 0 0 chr12 41597774 41597889 -102684600 + FLAM_C SINE Alu 1 115 -18 182 300 29 43 chr12 41598168 41598238 -102684251 + MIR3 SINE MIR 139 207 -1 1223 150 12 12 chr12 41598837 41599077 -102683412 + L1MB3 LINE L1 5934 6173 -10 21 0 0 0 chr12 41599092 41599113 -102683376 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr12 41599552 41599588 -102682901 + AT_rich Low_complexity Low_complexity 1 36 0 347 313 72 53 chr12 41601373 41601638 -102680851 + MARNA DNA Mariner 260 529 -57 29 0 0 0 chr12 41605578 41605607 -102676882 + AT_rich Low_complexity Low_complexity 1 29 0 537 242 157 7 chr12 41605964 41606117 -102676372 - MER5A DNA MER1_type -6 183 8 294 197 318 23 chr12 41606121 41606253 -102676236 + MIR3 SINE MIR 33 203 -5 486 347 40 0 chr12 41607230 41607380 -102675109 - L2 LINE L2 0 3272 3117 35 33 0 17 chr12 41607689 41607730 -102674759 + AT_rich Low_complexity Low_complexity 1 42 -17 1799 122 8 0 chr12 41607730 41607985 -102674504 - AluSg SINE Alu -21 289 33 35 33 0 17 chr12 41607985 41608003 -102674486 + AT_rich Low_complexity Low_complexity 42 59 0 219 114 0 0 chr12 41609503 41609538 -102672951 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2048 105 10 7 chr12 41611553 41611849 -102670640 - Tigger3b DNA MER2_type -1 1230 934 248 51 0 0 chr12 41611847 41611886 -102670603 - AluSx SINE Alu -4 297 259 * 1519 139 0 0 chr12 41611886 41612102 -102670387 - AluSx SINE Alu -96 216 1 933 143 0 0 chr12 41612120 41612267 -102670222 + Tigger1 DNA MER2_type 1 147 -2271 * 1295 118 14 27 chr12 41612265 41612485 -102670004 + Tigger1 DNA MER2_type 2202 2418 0 * 5023 153 39 8 chr12 41612485 41613388 -102669101 - Tigger3b DNA MER2_type -299 932 1 653 239 33 0 chr12 41613471 41613634 -102668855 - MIR SINE MIR -33 229 61 556 266 53 26 chr12 41614391 41614617 -102667872 + L1ME LINE L1 5557 5790 -331 653 173 0 60 chr12 41614875 41615008 -102667481 + FLAM_C SINE Alu 2 126 -7 2092 146 98 26 chr12 41615410 41615664 -102666825 - L1MB7 LINE L1 -20 6164 5867 2045 103 52 3 chr12 41615664 41615955 -102666534 - AluSx SINE Alu -7 305 1 2092 146 98 26 chr12 41615955 41616117 -102666372 - L1MB7 LINE L1 -317 5867 5718 266 304 88 14 chr12 41616537 41616685 -102665804 - L2 LINE L2 0 3313 3155 210 321 0 19 chr12 41616783 41616836 -102665653 - MIR SINE MIR -164 98 47 2139 126 3 0 chr12 41616836 41617178 -102665311 - AluSx SINE Alu 0 343 1 22 0 0 0 chr12 41617197 41617219 -102665270 + AT_rich Low_complexity Low_complexity 1 22 0 284 231 15 0 chr12 41617501 41617566 -102664923 + MIR SINE MIR 180 245 -17 421 273 36 72 chr12 41619924 41620118 -102662371 - MIR SINE MIR -70 192 6 202 247 21 0 chr12 41621449 41621542 -102660947 + CT-rich Low_complexity Low_complexity 4 98 0 275 244 0 11 chr12 41621574 41621664 -102660825 + CT-rich Low_complexity Low_complexity 2 90 0 478 330 30 97 chr12 41621995 41622459 -102660030 - L2 LINE L2 -3 3269 2837 1561 249 86 25 chr12 41622532 41623054 -102659435 - MER68 LTR ERV1 0 562 9 25 0 0 0 chr12 41623883 41623908 -102658581 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr12 41623979 41624009 -102658480 + AT_rich Low_complexity Low_complexity 1 30 0 23 92 0 0 chr12 41625002 41625067 -102657422 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr12 41625430 41625453 -102657036 + AT_rich Low_complexity Low_complexity 1 23 0 2073 91 7 39 chr12 41625457 41625764 -102656725 + AluY SINE Alu 1 297 -14 562 276 13 13 chr12 41626353 41626509 -102655980 - Charlie8 DNA MER1_type -2159 258 103 2338 81 0 0 chr12 41626973 41627269 -102655220 - AluY SINE Alu -15 296 1 248 224 106 35 chr12 41627334 41627419 -102655070 - L2 LINE L2 -36 3277 3187 203 88 29 0 chr12 41627742 41627776 -102654713 + (TTC)n Simple_repeat Simple_repeat 2 36 0 836 186 157 30 chr12 41627795 41628026 -102654463 + MIR SINE MIR 1 262 0 25 0 0 0 chr12 41628510 41628535 -102653954 + AT_rich Low_complexity Low_complexity 1 25 0 254 203 0 16 chr12 41629122 41629186 -102653303 + (TG)n Simple_repeat Simple_repeat 2 64 0 2222 121 7 0 chr12 41630137 41630444 -102652045 - AluSx SINE Alu -3 309 1 795 277 163 27 chr12 41631450 41631967 -102650522 - Charlie7 DNA MER1_type -1940 672 86 2430 44 3 3 chr12 41632101 41632397 -102650092 - AluY SINE Alu -15 296 1 224 66 58 0 chr12 41632556 41632594 -102649895 + MIR SINE MIR 105 145 -63 605 309 57 68 chr12 41636976 41637345 -102645144 - L3 LINE CR1 -219 1358 994 412 340 94 19 chr12 41637491 41637703 -102644786 - L3 LINE CR1 -975 602 375 3542 84 34 4 chr12 41638427 41638962 -102643527 - L1MA2 LINE L1 0 6304 5754 22 35 0 0 chr12 41639715 41639744 -102642745 + AT_rich Low_complexity Low_complexity 1 29 0 607 329 32 20 chr12 41640015 41640261 -102642228 - MIR SINE MIR -1 261 13 21 0 0 0 chr12 41640881 41640902 -102641587 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 41641244 41641267 -102641222 + AT_rich Low_complexity Low_complexity 1 23 0 2089 96 3 64 chr12 41642695 41643008 -102639481 - AluSx SINE Alu -16 296 3 283 288 99 27 chr12 41643178 41643289 -102639200 - L2 LINE L2 -5 3267 3149 26 0 0 0 chr12 41643907 41643933 -102638556 + AT_rich Low_complexity Low_complexity 1 26 0 208 242 30 91 chr12 41644166 41644265 -102638224 - L2 LINE L2 0 3313 3221 525 180 0 0 chr12 41644269 41644358 -102638131 - AluJ/FLAM SINE Alu -223 89 1 233 322 11 0 chr12 41645117 41645204 -102637285 + L1MC4 LINE L1 6618 6705 -1337 906 174 7 7 chr12 41645557 41645706 -102636783 + FAM SINE Alu 10 158 -27 2245 111 0 0 chr12 41645707 41646013 -102636476 - AluSx SINE Alu -6 306 1 227 263 0 0 chr12 41646355 41646412 -102636077 + T-rich Low_complexity Low_complexity 4 60 0 285 301 110 72 chr12 41646605 41646841 -102635648 - L2 LINE L2 -943 2371 2127 200 160 10 90 chr12 41647590 41647638 -102634851 + A-rich Low_complexity Low_complexity 2 40 -53 866 198 24 0 chr12 41647638 41647805 -102634684 + FAM SINE Alu 5 175 0 200 160 10 90 chr12 41647805 41647856 -102634633 + A-rich Low_complexity Low_complexity 39 93 0 684 236 157 21 chr12 41650069 41650349 -102632140 - L2 LINE L2 0 3313 2996 5899 102 13 4 chr12 41650977 41651962 -102630527 - L1PA14 LINE L1 -1 6160 5165 732 212 0 20 chr12 41652097 41652243 -102630246 - MIR SINE MIR -5 257 115 1415 306 65 28 chr12 41652260 41653107 -102629382 - L1MEc LINE L1 -5484 912 35 302 149 0 0 chr12 41653110 41653157 -102629332 + L2 LINE L2 2328 2374 -940 29 47 0 0 chr12 41653192 41653235 -102629254 + AT_rich Low_complexity Low_complexity 1 43 0 4483 16 2 0 chr12 41653363 41653877 -102628612 - L1PA3 LINE L1 -17 6138 5624 1603 302 89 23 chr12 41653877 41654683 -102627806 + L2 LINE L2 2358 3224 -89 23 33 0 0 chr12 41654686 41654716 -102627773 + AT_rich Low_complexity Low_complexity 1 30 0 2322 81 0 3 chr12 41654727 41655024 -102627465 + AluY SINE Alu 1 296 -15 198 0 0 0 chr12 41655048 41655070 -102627419 + (T)n Simple_repeat Simple_repeat 1 22 0 2061 96 27 23 chr12 41655102 41655403 -102627086 + AluSc SINE Alu 5 306 -3 285 189 57 0 chr12 41655409 41655462 -102627027 + L2 LINE L2 3214 3269 -3 205 299 279 7 chr12 41655537 41655691 -102626798 + MIR3 SINE MIR 1 196 -12 624 243 133 26 chr12 41656190 41656416 -102626073 + MIR SINE MIR 13 262 0 185 279 261 9 chr12 41658696 41658807 -102623682 - L2 LINE L2 0 3313 3175 * 186 279 27 45 chr12 41658801 41658912 -102623577 - MIR SINE MIR 0 262 154 204 129 0 0 chr12 41659726 41659757 -102622732 - MIR SINE MIR 0 262 232 292 171 0 79 chr12 41659800 41659876 -102622613 - HsTC2 DNA Tc2 -1828 70 1 245 265 71 0 chr12 41660354 41660452 -102622037 + LTR67 LTR ERVL 434 538 -19 8842 108 22 2 chr12 41661491 41662742 -102619747 - HSMAR1 DNA Mariner -2 1285 10 826 287 51 69 chr12 41662996 41663408 -102619081 + MLT1J LTR MaLR 1 347 -103 694 238 114 21 chr12 41663408 41663601 -102618888 - MER58C DNA MER1_type -4 211 1 826 287 51 69 chr12 41663601 41663681 -102618808 + MLT1J LTR MaLR 347 427 -23 365 273 50 0 chr12 41663821 41663920 -102618569 + MER91B DNA MER1_type 27 130 -60 31 0 0 0 chr12 41664253 41664284 -102618205 + AT_rich Low_complexity Low_complexity 1 31 0 2341 35 42 3 chr12 41664603 41664887 -102617602 + AluY SINE Alu 1 295 -16 1078 306 87 16 chr12 41664936 41665440 -102617049 + LTR67 LTR ERVL 2 541 -16 612 210 119 45 chr12 41666308 41666484 -102616005 - MER5A DNA MER1_type 0 189 1 258 320 25 0 chr12 41666785 41666907 -102615582 + MLT1L LTR MaLR 491 615 0 531 264 23 8 chr12 41668037 41668166 -102614323 + L2 LINE L2 3136 3266 -6 7103 201 63 14 chr12 41669010 41670754 -102611735 - L1MCa LINE L1 -2579 3847 2190 1629 177 50 3 chr12 41670754 41671037 -102611452 - AluSx SINE Alu -16 296 1 7103 201 63 14 chr12 41671037 41671114 -102611375 - L1MCa LINE L1 -4236 2190 2118 1972 116 0 79 chr12 41671114 41671432 -102611057 - AluSc SINE Alu -14 295 3 7103 201 63 14 chr12 41671432 41673090 -102609399 - L1MCa LINE L1 -4308 2118 104 345 199 53 93 chr12 41673157 41673308 -102609181 - MER112 DNA MER1_type -97 163 19 1620 185 37 16 chr12 41674538 41674917 -102607572 - Charlie5 DNA MER1_type 0 2624 2238 718 167 0 0 chr12 41674929 41675049 -102607440 - MER3 DNA MER1_type -42 167 48 24 32 0 0 chr12 41675822 41675853 -102606636 + AT_rich Low_complexity Low_complexity 1 31 0 319 347 71 34 chr12 41676712 41676951 -102605538 - L2 LINE L2 -514 2800 2553 198 0 0 0 chr12 41677400 41677422 -102605067 + (A)n Simple_repeat Simple_repeat 1 22 0 427 321 22 0 chr12 41678526 41678660 -102603829 + MIR3 SINE MIR 67 203 -5 237 224 105 13 chr12 41678832 41678908 -102603581 - MIR3 SINE MIR -8 200 118 514 282 186 30 chr12 41678939 41679240 -102603249 - L2 LINE L2 -42 3271 2924 248 160 0 40 chr12 41679289 41679339 -102603150 - L2 LINE L2 0 3313 3266 25 51 0 0 chr12 41679510 41679549 -102602940 + AT_rich Low_complexity Low_complexity 1 39 0 3613 166 39 79 chr12 41680279 41681105 -102601384 - MER54B LTR ERVL 0 793 1 181 291 43 92 chr12 41681215 41681356 -102601133 - L2 LINE L2 -303 2969 2836 570 282 39 6 chr12 41681554 41681735 -102600754 - Charlie8 DNA MER1_type -2195 222 36 317 379 115 14 chr12 41681762 41682266 -102600223 - L2 LINE L2 -553 2761 2207 214 310 14 0 chr12 41682261 41682332 -102600157 - L2 LINE L2 0 3272 3201 * 801 144 0 16 chr12 41682441 41682566 -102599923 - Tigger1 DNA MER2_type 0 2418 2296 271 30 0 0 chr12 41682643 41682676 -102599813 - Tigger1 DNA MER2_type -125 2293 2261 657 122 73 0 chr12 41682715 41682838 -102599651 - Tigger1 DNA MER2_type -121 2297 2166 1797 166 3 3 chr12 41883520 41883822 -102398667 + AluJo SINE Alu 1 302 -10 236 210 16 0 chr12 41884090 41884152 -102398337 - L1MCa LINE L1 -4358 2068 2006 227 304 47 0 chr12 41884176 41884347 -102398142 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 226 322 23 0 chr12 41884384 41884471 -102398018 + L1MC4 LINE L1 6615 6703 -1339 * 318 256 0 0 chr12 41884441 41884531 -102397958 + L1MC4 LINE L1 6614 6703 -1339 2177 61 0 0 chr12 41884547 41884809 -102397680 - AluY SINE Alu -6 305 44 742 191 0 0 chr12 41884893 41885019 -102397470 + FLAM_A SINE Alu 1 126 -7 205 182 15 30 chr12 41885183 41885249 -102397240 + CT-rich Low_complexity Low_complexity 3 67 0 2262 101 0 3 chr12 41886460 41886757 -102395732 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr12 41887069 41887092 -102395397 + AT_rich Low_complexity Low_complexity 1 23 0 305 235 88 28 chr12 41888281 41888420 -102394069 + MIR SINE MIR 25 175 -66 268 221 124 0 chr12 41889170 41889283 -102393206 - L1ME LINE L1 -239 5882 5756 636 212 14 94 chr12 41889552 41889764 -102392725 - MLT1D LTR MaLR -310 195 1 21 0 0 0 chr12 41889937 41889958 -102392531 + AT_rich Low_complexity Low_complexity 1 21 0 2257 103 3 0 chr12 41890270 41890570 -102391919 + AluSc SINE Alu 1 301 -8 22 88 0 0 chr12 41891165 41891222 -102391267 + AT_rich Low_complexity Low_complexity 1 57 0 26 0 0 0 chr12 41891288 41891314 -102391175 + AT_rich Low_complexity Low_complexity 1 26 0 2071 131 0 0 chr12 41891575 41891887 -102390602 + AluSx SINE Alu 1 312 0 306 278 10 21 chr12 41893141 41893238 -102389251 + MIR SINE MIR 164 259 -3 185 208 151 19 chr12 41894295 41894348 -102388141 - MER5B DNA MER1_type -115 63 4 274 268 0 0 chr12 41895359 41895415 -102387074 + AluS SINE Alu 233 288 -12 300 269 90 8 chr12 41895421 41895555 -102386934 + L1 LINE L1 4173 4317 -1829 1309 108 37 23 chr12 41895774 41895988 -102386501 + L1PA10 LINE L1 5948 6164 -4 21 36 0 0 chr12 41895988 41896016 -102386473 + AT_rich Low_complexity Low_complexity 1 28 0 205 329 0 38 chr12 41896776 41896855 -102385634 - L2 LINE L2 -4 3268 3193 407 276 33 53 chr12 41898504 41898656 -102383833 + MIR SINE MIR 36 184 -78 566 260 94 10 chr12 41899342 41899534 -102382955 - L1ME1 LINE L1 -7 6159 5952 * 695 243 82 22 chr12 41899531 41899798 -102382691 - L1MEc LINE L1 -2607 3608 3326 1023 254 122 18 chr12 41899808 41900247 -102382242 - MLT1D LTR MaLR 0 467 1 2247 260 96 31 chr12 41900256 41901793 -102380696 - L1MEc LINE L1 -2908 3307 36 246 257 14 0 chr12 41903577 41903647 -102378842 + MER94 DNA DNA 28 98 -36 252 86 0 0 chr12 41903809 41903844 -102378645 + (CA)n Simple_repeat Simple_repeat 2 36 0 357 301 29 29 chr12 41905187 41905323 -102377166 - L2 LINE L2 -58 3255 3120 22 35 0 0 chr12 41907960 41907989 -102374500 + AT_rich Low_complexity Low_complexity 1 29 0 1700 162 23 13 chr12 41908874 41909176 -102373313 + AluJb SINE Alu 1 305 -7 21 57 0 0 chr12 41910112 41910147 -102372342 + AT_rich Low_complexity Low_complexity 1 35 0 2653 164 15 8 chr12 41910460 41910482 -102372007 - L1MB4 LINE L1 0 6180 6160 264 59 0 0 chr12 41910482 41910516 -102371973 + (TG)n Simple_repeat Simple_repeat 1 34 0 204 40 0 0 chr12 41910519 41910544 -102371945 + (TA)n Simple_repeat Simple_repeat 1 25 0 2653 164 15 8 chr12 41910544 41911040 -102371449 - L1MB4 LINE L1 -21 6159 5654 309 223 134 76 chr12 41911499 41911656 -102370833 - MLT1K LTR MaLR -12 576 411 294 287 24 85 chr12 41911758 41911922 -102370567 - MLT1K LTR MaLR -343 245 92 449 369 65 0 chr12 41913400 41913614 -102368875 - MIR SINE MIR -30 232 5 204 125 0 0 chr12 41914000 41914032 -102368457 + (CATA)n Simple_repeat Simple_repeat 2 33 0 940 163 224 37 chr12 41914978 41915224 -102367265 + AluJo SINE Alu 1 292 -10 192 77 0 0 chr12 41915249 41915275 -102367214 + (TG)n Simple_repeat Simple_repeat 2 27 0 543 95 107 0 chr12 41915340 41915424 -102367065 - AluSc SINE Alu -15 294 202 334 82 20 20 chr12 41915424 41915473 -102367016 - AluJb SINE Alu -131 171 123 181 219 0 0 chr12 41916135 41916167 -102366322 + L2 LINE L2 3226 3257 -15 1255 244 159 0 chr12 41916370 41916805 -102365684 - MLT2B1 LTR ERVL 0 520 17 397 298 157 54 chr12 41916827 41917196 -102365293 + L2 LINE L2 2862 3268 -4 391 254 7 56 chr12 41918132 41918274 -102364215 - MARNA DNA Mariner -182 404 270 347 324 100 28 chr12 41919257 41919542 -102362947 - L1M4 LINE L1 -993 5153 4841 640 62 0 0 chr12 41919542 41919622 -102362867 + MADE1 DNA Mariner 1 80 0 347 324 100 28 chr12 41919622 41919657 -102362832 - L1M4 LINE L1 -1305 4841 4810 525 229 84 12 chr12 41919744 41919910 -102362579 - L1MEc LINE L1 -6179 217 40 568 307 112 45 chr12 41919912 41920473 -102362016 - L1MDa LINE L1 -3056 3484 2886 310 293 130 55 chr12 41920549 41920853 -102361636 - L1MDa LINE L1 -3904 2636 2446 182 36 0 36 chr12 41921888 41921916 -102360573 + (TTA)n Simple_repeat Simple_repeat 3 29 0 7326 36 1 1 chr12 41922911 41924420 -102358069 - L1PA5 LINE L1 -34 6120 4612 28 71 0 0 chr12 41925161 41925217 -102357272 + AT_rich Low_complexity Low_complexity 1 56 0 21 57 0 0 chr12 41925413 41925448 -102357041 + AT_rich Low_complexity Low_complexity 1 35 0 2112 111 7 26 chr12 41925771 41926077 -102356412 + AluSx SINE Alu 1 300 -12 536 95 51 0 chr12 41926077 41926214 -102356275 + (TA)n Simple_repeat Simple_repeat 1 144 0 2134 286 100 28 chr12 41926486 41926899 -102355590 + L2 LINE L2 1354 1736 -1578 2223 93 4 0 chr12 41926899 41927179 -102355310 + AluSp SINE Alu 1 281 -32 189 0 0 0 chr12 41927179 41927200 -102355289 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2134 286 100 28 chr12 41927200 41927844 -102354645 + L2 LINE L2 1735 2488 -826 180 256 44 33 chr12 41927861 41927951 -102354538 + L2 LINE L2 3119 3209 -104 330 293 85 0 chr12 41928212 41928318 -102354171 - MIR SINE MIR -21 241 127 668 191 0 38 chr12 41930684 41930815 -102351674 - FLAM_A SINE Alu -7 126 1 21 0 0 0 chr12 41930875 41930896 -102351593 + AT_rich Low_complexity Low_complexity 1 21 0 384 255 28 0 chr12 41931298 41931404 -102351085 - MIR SINE MIR -91 171 63 699 288 98 14 chr12 41931652 41931947 -102350542 - MARNA DNA Mariner -48 538 219 434 298 53 18 chr12 41932021 41932246 -102350243 + L2 LINE L2 3081 3313 0 302 192 68 55 chr12 41932255 41932328 -102350161 - MARNA DNA Mariner -381 205 132 32223 31 12 1 chr12 41932434 41938457 -102344032 + L1PA2 LINE L1 8 6152 -3 1412 189 52 11 chr12 41939994 41940280 -102342209 - MLT1A1 LTR MaLR 0 365 68 278 86 14 129 chr12 41940343 41940413 -102342076 - MLT1A1 LTR MaLR -303 62 1 809 156 170 0 chr12 41940549 41940761 -102341728 - MER5C DNA MER1_type -4 320 73 770 259 30 55 chr12 41941439 41941675 -102340814 + L2 LINE L2 2214 2443 -871 215 260 0 0 chr12 41941675 41941725 -102340764 - L2 LINE L2 -1067 2247 2198 642 330 33 31 chr12 41942138 41942587 -102339902 - L1MC/D LINE L1 -2046 5762 5313 480 158 17 8 chr12 41942589 41942709 -102339780 + GA-rich Low_complexity Low_complexity 2 122 0 230 240 0 0 chr12 41942794 41942844 -102339645 + GA-rich Low_complexity Low_complexity 3 52 0 1183 258 104 38 chr12 41942915 41943653 -102338836 + L2 LINE L2 2440 3313 0 381 260 58 45 chr12 41944295 41944449 -102338040 + L2 LINE L2 3158 3313 0 22 0 0 0 chr12 41948032 41948054 -102334435 + AT_rich Low_complexity Low_complexity 1 22 0 2359 67 20 0 chr12 41948193 41948491 -102333998 + AluY SINE Alu 2 305 -6 351 253 111 16 chr12 41948757 41948928 -102333561 + MIR3 SINE MIR 14 208 -32 1580 174 111 3 chr12 41949233 41949584 -102332905 - L1MA5 LINE L1 -4 6296 5908 2153 111 60 28 chr12 41949747 41950100 -102332389 + THE1B LTR MaLR 1 364 0 5339 109 1 0 chr12 41950136 41950861 -102331628 + THE1B-int LTR MaLR 136 861 -719 4482 143 2 23 chr12 41950861 41951634 -102330855 + L1PB1 LINE L1 4381 5169 -982 2305 92 0 3 chr12 41951634 41951928 -102330561 + AluY SINE Alu 1 293 -18 4482 143 2 23 chr12 41951928 41952499 -102329990 + L1PB1 LINE L1 5169 6021 -130 3205 84 0 2 chr12 41952505 41952919 -102329570 + THE1B-int LTR MaLR 1168 1580 0 836 129 114 0 chr12 41952919 41953050 -102329439 + THE1B LTR MaLR 1 146 -218 4479 49 17 57 chr12 41953050 41954140 -102328349 + MER11A LTR ERVK 1 1266 0 1378 134 25 25 chr12 41954140 41954364 -102328125 + THE1B LTR MaLR 139 362 -2 1964 168 24 24 chr12 41954578 41954958 -102327531 - MLT1B LTR MaLR 0 390 11 345 349 48 7 chr12 41955549 41955745 -102326744 - MIR3 SINE MIR -41 221 13 709 287 77 5 chr12 41956261 41956470 -102326019 - MIR SINE MIR -16 246 23 346 323 46 0 chr12 41956681 41956811 -102325678 - L2 LINE L2 0 3272 3137 297 256 47 35 chr12 41957841 41957927 -102324562 - MIR SINE MIR -70 192 106 941 96 0 0 chr12 41957927 41958052 -102324437 + AluSq SINE Alu 131 255 -58 1568 162 4 0 chr12 41958152 41958405 -102324084 - AluSq SINE Alu -59 254 1 2242 114 3 3 chr12 41958428 41958735 -102323754 - AluSx SINE Alu -3 309 3 1628 176 24 30 chr12 41958864 41959159 -102323330 - AluJo SINE Alu -19 293 1 735 192 0 8 chr12 41959159 41959289 -102323200 - FRAM SINE Alu -14 162 34 262 77 0 0 chr12 41959307 41959346 -102323143 + L1MA4A LINE L1 6234 6272 -31 247 125 0 0 chr12 41959372 41959412 -102323077 - L1 LINE L1 -2211 3935 3896 1967 114 4 0 chr12 41959487 41959749 -102322740 - AluSq SINE Alu -50 263 1 229 350 10 21 chr12 41960141 41960238 -102322251 + MIR SINE MIR 38 133 -75 2526 35 0 3 chr12 41960375 41960664 -102321825 + AluY SINE Alu 13 300 -11 319 200 11 11 chr12 41963380 41963475 -102319014 + (TA)n Simple_repeat Simple_repeat 1 95 0 2549 109 2 48 chr12 41965395 41965788 -102316701 - THE1C LTR MaLR 0 375 1 201 147 0 0 chr12 41966069 41966103 -102316386 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 477 0 0 0 chr12 41966106 41966159 -102316330 + (TA)n Simple_repeat Simple_repeat 1 53 0 4138 50 0 2 chr12 41966163 41966683 -102315806 - L1PA5 LINE L1 -13 6141 5623 3653 254 91 54 chr12 41966783 41967338 -102315151 + L1ME2 LINE L1 2021 2554 -3661 412 176 66 0 chr12 41967338 41967429 -102315060 + L1MB3 LINE L1 6086 6182 -1 3653 254 91 54 chr12 41967429 41967646 -102314843 + L1ME2 LINE L1 2554 2762 -3453 1961 133 40 7 chr12 41967646 41967947 -102314542 - AluJb SINE Alu -1 311 1 3653 254 91 54 chr12 41967947 41968755 -102313734 + L1ME2 LINE L1 2762 3669 -2546 1626 181 0 38 chr12 41968755 41969069 -102313420 - AluJb SINE Alu -10 302 1 3653 254 91 54 chr12 41969069 41969604 -102312885 + L1ME2 LINE L1 3669 4183 -2032 587 233 97 0 chr12 41969612 41969788 -102312701 + L1ME2 LINE L1 4699 4891 -1324 * 1141 232 53 10 chr12 41969783 41970085 -102312404 + L1ME2 LINE L1 5909 6223 -10 188 299 65 26 chr12 41970281 41970358 -102312131 + L2 LINE L2 3149 3228 -44 225 333 0 15 chr12 41971460 41971526 -102310963 + L2 LINE L2 3204 3268 -4 626 276 116 0 chr12 41973200 41973381 -102309108 + MIR SINE MIR 35 236 -26 582 207 39 62 chr12 41974210 41974389 -102308100 + MER5B DNA MER1_type 4 178 0 180 309 0 0 chr12 41974816 41974858 -102307631 - MIR SINE MIR -71 191 150 2124 112 0 0 chr12 41974885 41975163 -102307326 + AluSg SINE Alu 1 278 -32 183 42 0 0 chr12 41975163 41975187 -102307302 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 240 200 0 0 chr12 41975626 41975681 -102306808 + CT-rich Low_complexity Low_complexity 2 56 0 189 362 64 11 chr12 41977019 41977113 -102305376 - MIR3 SINE MIR -2 206 108 293 247 21 0 chr12 41978176 41978273 -102304216 + (TA)n Simple_repeat Simple_repeat 2 100 0 2354 94 0 0 chr12 41979310 41979608 -102302881 - AluSx SINE Alu -14 298 1 24 67 0 0 chr12 41979723 41979768 -102302721 + AT_rich Low_complexity Low_complexity 1 45 0 688 273 154 24 chr12 41981658 41981988 -102300501 - L2 LINE L2 -5 3308 2936 2041 132 7 3 chr12 41983556 41983851 -102298638 - AluSx SINE Alu -16 296 1 1652 144 93 34 chr12 41985829 41986183 -102296306 - THE1C LTR MaLR 0 375 1 595 202 53 140 chr12 41988060 41988303 -102294186 - MER58A DNA MER1_type -1 223 2 249 159 0 0 chr12 41988383 41988427 -102294062 + T-rich Low_complexity Low_complexity 1 44 0 409 141 0 0 chr12 41988874 41988938 -102293551 - MER92C LTR ERV1 0 554 491 222 282 13 64 chr12 41989147 41989225 -102293264 + L2 LINE L2 3187 3260 -12 398 277 39 68 chr12 41990429 41990635 -102291854 - MIR SINE MIR -14 248 49 229 304 154 10 chr12 41990658 41990859 -102291630 - L2 LINE L2 -83 3230 3001 2134 121 3 7 chr12 41991616 41991913 -102290576 + AluSp SINE Alu 6 301 -12 217 319 75 38 chr12 41992512 41992672 -102289817 + MIR SINE MIR 91 256 -6 747 229 104 10 chr12 41992869 41993061 -102289428 + MIR SINE MIR 32 241 -21 215 260 0 0 chr12 41993032 41993082 -102289407 + L2 LINE L2 3258 3307 -6 * 828 216 24 0 chr12 41994449 41994616 -102287873 + MER45A DNA AcHobo 1 171 -7 1378 126 0 86 chr12 41994675 41994930 -102287559 + L1PA16 LINE L1 5930 6162 -4 846 192 67 39 chr12 41995033 41995241 -102287248 + MER20 DNA MER1_type 6 219 0 1739 184 0 19 chr12 41996670 41996985 -102285504 + AluJo SINE Alu 2 310 -2 540 295 68 0 chr12 41997405 41997595 -102284894 - L1ME3A LINE L1 -341 5829 5627 2119 114 0 20 chr12 41997772 41998078 -102284411 - AluY SINE Alu -11 300 1 400 268 137 32 chr12 41998578 41998768 -102283721 - MIR SINE MIR -7 255 46 498 349 16 23 chr12 41999885 42000143 -102282346 - MIR SINE MIR -2 260 5 286 187 415 0 chr12 42000417 42000540 -102281949 - MER5B DNA MER1_type -2 176 3 506 234 0 0 chr12 42000553 42000647 -102281842 + MER2 DNA MER2_type 8 101 -244 747 234 38 16 chr12 42000680 42000864 -102281625 - MER5A DNA MER1_type 0 189 2 1968 132 51 31 chr12 42001350 42001705 -102280784 + Tigger2a DNA MER2_type 5 366 -68 342 271 0 21 chr12 42001726 42001822 -102280667 + MSTD LTR MaLR 270 363 -33 1185 168 0 45 chr12 42001822 42001919 -102280570 + MER2 DNA MER2_type 1 101 -244 2090 137 3 0 chr12 42001919 42002219 -102280270 + AluSq SINE Alu 1 301 -12 1185 168 0 45 chr12 42002219 42002341 -102280148 + MER2 DNA MER2_type 101 210 -135 232 264 23 23 chr12 42004309 42004396 -102278093 + CT-rich Low_complexity Low_complexity 2 88 0 1825 193 112 30 chr12 42008441 42008871 -102273618 + MER68 LTR ERV1 1 465 -97 258 146 0 0 chr12 42008875 42008916 -102273573 + MER77 LTR ERV1 565 605 0 318 216 198 18 chr12 42009099 42009210 -102273279 - MLT1K LTR MaLR -19 569 439 21 0 0 0 chr12 42010151 42010172 -102272317 + AT_rich Low_complexity Low_complexity 1 21 0 13768 29 2 1 chr12 42010577 42012991 -102269498 - L1PA3 LINE L1 -3 6152 3736 8253 35 1 0 chr12 42012991 42014008 -102268481 + L1PA3 LINE L1 2693 3713 -2433 316 292 142 9 chr12 42014672 42014905 -102267584 + L1ME LINE L1 5560 5823 -298 259 176 59 44 chr12 42014915 42014983 -102267506 - MIR SINE MIR 0 262 194 677 223 6 40 chr12 42015236 42015411 -102267078 - MER3 DNA MER1_type -87 122 1 303 333 0 0 chr12 42016318 42016408 -102266081 - L1MC4 LINE L1 -1339 6703 6614 446 172 21 0 chr12 42016408 42016501 -102265988 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 2467 82 0 0 chr12 42016672 42016977 -102265512 + AluY SINE Alu 1 305 -6 8372 204 53 63 chr12 42017545 42022913 -102259576 + L1PB1 LINE L1 306 5860 -1002 5746 100 9 41 chr12 42022916 42023487 -102259002 + L1PB1 LINE L1 5922 6452 -415 216 0 0 0 chr12 42023487 42023511 -102258978 + (TA)n Simple_repeat Simple_repeat 2 25 0 5746 100 9 41 chr12 42023511 42023907 -102258582 + L1PB1 LINE L1 6452 6859 -8 32 26 0 0 chr12 42023911 42023950 -102258539 + AT_rich Low_complexity Low_complexity 1 39 0 233 338 132 29 chr12 42024594 42024730 -102257759 + MIR3 SINE MIR 7 156 -52 186 348 0 0 chr12 42024906 42024952 -102257537 - L2 LINE L2 -16 3297 3252 712 304 112 10 chr12 42025354 42025657 -102256832 - LTR16C LTR ERVL 0 491 158 268 307 71 31 chr12 42026283 42026410 -102256079 + MIR SINE MIR 23 154 -108 383 292 64 43 chr12 42027644 42027877 -102254612 + L2 LINE L2 2173 2410 -904 846 153 15 0 chr12 42029387 42029524 -102252965 - BC200 scRNA scRNA -61 139 1 249 349 37 9 chr12 42030667 42030776 -102251713 + MIR SINE MIR 32 143 -119 345 267 27 67 chr12 42030796 42030946 -102251543 + L2 LINE L2 2381 2524 -790 226 227 45 45 chr12 42030963 42031029 -102251460 + MER119 DNA MER1_type 28 93 -490 525 170 28 19 chr12 42031064 42031170 -102251319 + MER119 DNA MER1_type 477 583 0 596 344 120 20 chr12 42031199 42031404 -102251085 + L2 LINE L2 2552 2735 -578 1856 118 4 11 chr12 42031404 42031667 -102250822 - AluSx SINE Alu -31 281 21 596 344 120 20 chr12 42031667 42032148 -102250341 + L2 LINE L2 2735 3307 -6 28 79 0 0 chr12 42032712 42032775 -102249714 + AT_rich Low_complexity Low_complexity 1 63 0 886 249 101 42 chr12 42033906 42034311 -102248178 - HAL1 LINE L1 0 2507 2079 2389 96 0 0 chr12 42034471 42034783 -102247706 - AluSx SINE Alu 0 312 1 320 276 125 73 chr12 42034797 42035064 -102247425 - HAL1 LINE L1 -476 2031 1735 2268 98 0 0 chr12 42035064 42035361 -102247128 - AluSg SINE Alu -13 297 1 320 276 125 73 chr12 42035361 42035492 -102246997 - HAL1 LINE L1 -772 1735 1612 479 285 164 29 chr12 42035556 42036001 -102246488 - HAL1 LINE L1 -1991 516 12 1983 137 7 3 chr12 42037595 42037879 -102244610 - AluSx SINE Alu -26 286 2 1537 90 5 0 chr12 42038138 42038359 -102244130 - AluSg/x SINE Alu 0 301 80 268 362 149 30 chr12 42038494 42038856 -102243633 + L2 LINE L2 2866 3270 -2 183 357 71 40 chr12 42040275 42040401 -102242088 - L2 LINE L2 -509 2805 2676 958 133 0 0 chr12 42040539 42040667 -102241822 + AluSq/x SINE Alu 4 131 -182 234 314 0 35 chr12 42040688 42040774 -102241715 + MIR SINE MIR 108 190 -72 2675 150 70 2 chr12 42040941 42041442 -102241047 + L1MB8 LINE L1 5399 5933 -245 990 121 0 7 chr12 42041544 42041693 -102240796 + AluSc SINE Alu 155 302 -7 224 287 84 49 chr12 42041702 42041845 -102240644 - MIR3 SINE MIR -22 186 39 25 31 0 0 chr12 42042656 42042688 -102239801 + AT_rich Low_complexity Low_complexity 1 32 0 333 225 108 8 chr12 42044070 42044190 -102238299 - L1ME4a LINE L1 -27 6094 5963 207 133 0 0 chr12 42044366 42044411 -102238078 + (A)n Simple_repeat Simple_repeat 1 45 0 725 108 0 0 chr12 42045287 42045398 -102237091 + AluY SINE Alu 201 311 0 23 33 0 0 chr12 42045758 42045788 -102236701 + AT_rich Low_complexity Low_complexity 1 30 0 435 19 0 0 chr12 42046431 42046483 -102236006 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 225 169 17 34 chr12 42047707 42047766 -102234723 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 263 68 114 0 chr12 42047778 42047822 -102234667 - MER21A LTR ERV1 -7 924 876 745 190 35 0 chr12 42047824 42047966 -102234523 - MER21A LTR ERV1 -257 674 528 430 284 7 61 chr12 42048378 42048526 -102233963 + MIR SINE MIR 51 190 -72 268 391 28 34 chr12 42049174 42049353 -102233136 + L2 LINE L2 1159 1336 -1978 518 316 114 5 chr12 42049508 42049701 -102232788 - MIR SINE MIR -12 250 37 24 32 0 0 chr12 42049920 42049951 -102232538 + AT_rich Low_complexity Low_complexity 1 31 0 2346 111 0 0 chr12 42050340 42050647 -102231842 - AluSx SINE Alu -3 309 3 205 305 126 21 chr12 42050691 42050786 -102231703 + L2 LINE L2 3197 3301 -12 194 319 44 69 chr12 42052274 42052434 -102230055 - MER5A DNA MER1_type 0 189 34 * 283 317 29 19 chr12 42052349 42052453 -102230036 + MER5A DNA MER1_type 81 185 -4 215 315 280 28 chr12 42054028 42054171 -102228318 - MIR SINE MIR -56 206 28 960 253 68 0 chr12 42054202 42054439 -102228050 + MIR SINE MIR 10 262 0 381 329 94 51 chr12 42054836 42055393 -102227096 - L2 LINE L2 0 3272 2653 2041 171 110 78 chr12 42056351 42056861 -102225628 - MER21A LTR ERV1 -387 544 19 465 62 0 0 chr12 42056863 42056928 -102225561 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 253 260 126 31 chr12 42057398 42057525 -102224964 + L1MEc LINE L1 1505 1643 -4753 535 316 103 42 chr12 42057704 42058306 -102224183 + L1MEc LINE L1 1914 2516 -3699 1000 221 0 19 chr12 42058308 42058516 -102223973 - MER2 DNA MER2_type -141 204 1 685 292 63 60 chr12 42058516 42058947 -102223542 + L1M4 LINE L1 4559 4990 -1156 264 230 46 0 chr12 42060738 42060751 -102221738 + (TA)n Simple_repeat Simple_repeat 2 13 -79 1603 192 0 17 chr12 42060751 42061043 -102221446 + AluJo SINE Alu 1 287 -25 264 230 46 0 chr12 42061043 42061116 -102221373 + (TA)n Simple_repeat Simple_repeat 13 92 0 1831 150 7 28 chr12 42062086 42062392 -102220097 + AluJb SINE Alu 2 301 0 335 314 131 11 chr12 42062570 42062745 -102219744 - MIR SINE MIR -5 257 62 21 0 0 0 chr12 42062915 42062936 -102219553 + AT_rich Low_complexity Low_complexity 1 21 0 199 323 52 21 chr12 42063818 42063914 -102218575 + MIR SINE MIR 53 151 -111 1143 163 5 37 chr12 42063990 42064205 -102218284 - AluJo SINE Alu -11 301 94 1438 175 0 25 chr12 42064695 42064975 -102217514 - AluJo SINE Alu -14 298 26 329 189 0 0 chr12 42067509 42067562 -102214927 + MER20 DNA MER1_type 93 145 -74 298 157 133 24 chr12 42067563 42067646 -102214843 - L1M4 LINE L1 -1313 5113 5022 271 167 46 0 chr12 42067653 42067714 -102214775 - FLAM_A SINE Alu -11 122 72 7867 226 87 37 chr12 42067732 42070589 -102211900 - L1MCa LINE L1 -2268 4158 1047 1630 207 0 3 chr12 42070589 42070889 -102211600 - AluJo SINE Alu -13 299 1 7867 226 87 37 chr12 42070889 42071955 -102210534 - L1MCa LINE L1 -5379 1047 35 782 248 105 66 chr12 42071966 42072591 -102209898 - L1MDb LINE L1 -4836 1704 1039 15280 220 34 15 chr12 42072612 42076290 -102206199 - L1PA15 LINE L1 -41 6775 3170 1993 123 14 10 chr12 42076290 42076582 -102205907 - AluSx SINE Alu -17 295 3 15280 220 34 15 chr12 42076582 42076816 -102205673 - L1PA15 LINE L1 -3646 3170 2942 2072 134 0 3 chr12 42076816 42077114 -102205375 - AluSx SINE Alu -15 297 1 15280 220 34 15 chr12 42077114 42078614 -102203875 - L1PA15 LINE L1 -3874 2942 1263 300 292 53 7 chr12 42078690 42078828 -102203661 - L1MDb LINE L1 -6236 307 70 2343 272 65 26 chr12 42078836 42079486 -102203003 - L1PA15 LINE L1 -6112 675 1 296 278 19 19 chr12 42079585 42079693 -102202796 - L1ME LINE L1 -5616 914 807 363 302 56 43 chr12 42080059 42080373 -102202116 - L1ME LINE L1 -5907 623 57 3115 178 77 90 chr12 42081171 42082042 -102200447 + MER21B LTR ERV1 1 860 -3 310 358 123 12 chr12 42082130 42082292 -102200197 - MIR3 SINE MIR -13 195 16 1729 108 139 0 chr12 42082301 42082559 -102199930 - AluSg SINE Alu -6 294 1 21 0 0 0 chr12 42082771 42082792 -102199697 + AT_rich Low_complexity Low_complexity 1 21 0 315 306 93 37 chr12 42083989 42084097 -102198392 - L2 LINE L2 0 3272 3159 261 216 20 0 chr12 42084435 42084486 -102198003 - MIR SINE MIR -10 252 201 277 341 52 7 chr12 42086186 42086321 -102196168 - L3 LINE CR1 -755 822 682 478 340 70 53 chr12 42086530 42086886 -102195603 - L3 LINE CR1 -1142 435 74 1895 137 81 0 chr12 42087351 42087673 -102194816 - MER7A DNA MER2_type 0 346 1 222 330 0 54 chr12 42088274 42088386 -102194103 - MIR SINE MIR 0 262 157 267 280 180 0 chr12 42089656 42089756 -102192733 - L3 LINE CR1 -5 1572 1455 2813 274 165 16 chr12 42089800 42091441 -102191048 - L2 LINE L2 -15 3298 1422 2177 70 50 33 chr12 42092349 42092651 -102189838 - AluY SINE Alu -4 307 1 2621 169 31 38 chr12 42093788 42094440 -102188049 + L1MB2 LINE L1 5133 5787 -384 186 133 0 0 chr12 42094440 42094470 -102188019 + (TATG)n Simple_repeat Simple_repeat 1 30 0 323 290 0 43 chr12 42094470 42094563 -102187926 - L1MC4 LINE L1 -1340 6702 6614 1732 160 75 8 chr12 42094571 42094933 -102187556 + L1MB2 LINE L1 5785 6170 -1 189 0 0 0 chr12 42095012 42095033 -102187456 + (TGAG)n Simple_repeat Simple_repeat 2 22 0 690 288 50 5 chr12 42095036 42095234 -102187255 + MIR SINE MIR 10 216 -46 2391 94 0 3 chr12 42097104 42097413 -102185076 + AluSq SINE Alu 1 308 -5 245 232 14 14 chr12 42098341 42098410 -102184079 + MIR SINE MIR 179 247 -15 249 316 115 14 chr12 42098586 42098725 -102183764 + L2 LINE L2 3159 3311 -2 266 191 319 21 chr12 42098880 42098974 -102183515 - L2 LINE L2 0 3313 3192 1307 109 16 0 chr12 42100023 42100207 -102182282 - AluJb SINE Alu -18 294 108 348 298 142 74 chr12 42102845 42103819 -102178670 + L1M2 LINE L1 468 1359 -5490 936 75 0 0 chr12 42104620 42104763 -102177726 - AluSg/x SINE Alu 0 306 164 2369 71 3 0 chr12 42105563 42105857 -102176632 + AluSg SINE Alu 1 295 -15 464 301 98 80 chr12 42106482 42106742 -102175747 - MLT1K LTR MaLR -11 577 323 1897 161 148 3 chr12 42106742 42107114 -102175375 + MSTB LTR MaLR 1 426 0 464 301 98 80 chr12 42107114 42107394 -102175095 - MLT1K LTR MaLR -265 323 27 190 336 55 31 chr12 42107443 42107571 -102174918 - L2 LINE L2 -1286 2028 1898 2219 130 7 0 chr12 42107576 42107883 -102174606 + AluSx SINE Alu 3 311 -1 361 234 83 2 chr12 42108882 42108993 -102173496 + MIR SINE MIR 38 154 -69 401 314 76 22 chr12 42109023 42109246 -102173243 - MLT1L LTR MaLR -31 584 350 731 186 5 108 chr12 42109700 42109894 -102172595 - AluJb SINE Alu -1 311 138 1666 140 63 71 chr12 42110463 42110841 -102171648 + THE1C LTR MaLR 1 375 0 298 228 54 43 chr12 42111094 42111186 -102171303 + L2 LINE L2 3168 3260 -12 22 0 0 0 chr12 42111645 42111667 -102170822 + AT_rich Low_complexity Low_complexity 1 22 0 911 322 53 42 chr12 42112844 42113300 -102169189 + LTR67 LTR ERVL 2 462 -95 23 68 0 0 chr12 42113313 42113357 -102169132 + AT_rich Low_complexity Low_complexity 1 44 0 483 226 10 106 chr12 42113357 42113856 -102168633 + L1ME1 LINE L1 1884 2391 -3824 1375 189 29 29 chr12 42113876 42114157 -102168332 + AluJo SINE Alu 3 283 -29 2306 153 44 0 chr12 42114176 42114542 -102167947 - MSTA LTR MaLR -46 382 1 395 208 111 14 chr12 42114581 42114725 -102167764 + L1ME1 LINE L1 2385 2542 -3673 1328 146 0 15 chr12 42114725 42114930 -102167559 + AluJb SINE Alu 86 287 -25 3112 255 81 25 chr12 42114996 42116208 -102166281 + L1ME1 LINE L1 2582 3861 -2354 944 231 0 5 chr12 42116276 42116492 -102165997 + L1ME1 LINE L1 4954 5168 -1047 1347 174 18 28 chr12 42116496 42116778 -102165711 + AluSx SINE Alu 6 284 -28 229 276 0 11 chr12 42116794 42116881 -102165608 + L1ME1 LINE L1 5163 5248 -967 4553 209 37 31 chr12 42116894 42118847 -102163642 - L1MD1 LINE L1 -28 6214 4252 1853 248 23 60 chr12 42118846 42119622 -102162867 + L1ME1 LINE L1 5242 5990 -245 * 1689 166 14 7 chr12 42119629 42119907 -102162582 - AluJb SINE Alu -26 286 7 646 171 0 0 chr12 42120072 42120189 -102162300 + L1MA10 LINE L1 6211 6327 -7 207 0 0 0 chr12 42120189 42120212 -102162277 + (TTG)n Simple_repeat Simple_repeat 1 23 0 2039 120 13 7 chr12 42120218 42120518 -102161971 - AluSx SINE Alu -10 302 1 290 304 38 33 chr12 42120662 42120846 -102161643 + MLT1J LTR MaLR 327 511 0 1723 163 3 7 chr12 42121746 42122028 -102160461 + AluJo SINE Alu 7 287 -25 2030 112 7 33 chr12 42122036 42122340 -102160149 + AluSx SINE Alu 1 296 -16 237 261 45 0 chr12 42123100 42123188 -102159301 + (TTTA)n Simple_repeat Simple_repeat 1 92 0 1609 173 0 24 chr12 42123192 42123481 -102159008 - AluJo SINE Alu -30 282 1 376 321 0 0 chr12 42123482 42123594 -102158895 - L2 LINE L2 -12 3301 3190 875 128 0 54 chr12 42123628 42123776 -102158713 + AluJo SINE Alu 1 140 -172 23 33 0 0 chr12 42124021 42124051 -102158438 + AT_rich Low_complexity Low_complexity 1 30 0 288 268 0 0 chr12 42126078 42126149 -102156340 + MER69A DNA AcHobo 2 72 -105 465 217 33 51 chr12 42126164 42126334 -102156155 - MER69A DNA AcHobo 0 177 14 4143 98 3 88 chr12 42126556 42127280 -102155209 + MER4A LTR ERV1 3 664 0 2550 56 0 0 chr12 42130002 42130304 -102152185 - AluY SINE Alu -9 302 1 318 315 25 53 chr12 42130373 42130732 -102151757 + MERVL LTR ERVL 5007 5308 -177 278 262 161 52 chr12 42131116 42131364 -102151125 + LTR16C LTR ERVL 174 448 -43 2093 124 0 0 chr12 42131433 42131723 -102150766 + AluSx SINE Alu 1 290 -22 628 180 110 40 chr12 42131837 42132137 -102150352 - L1MC5 LINE L1 -179 7782 7462 25 0 0 0 chr12 42132167 42132192 -102150297 + AT_rich Low_complexity Low_complexity 1 25 0 290 198 66 28 chr12 42132256 42132362 -102150127 - L1MC5 LINE L1 -469 7492 7383 32 43 0 0 chr12 42132363 42132409 -102150080 + AT_rich Low_complexity Low_complexity 1 46 0 204 290 29 0 chr12 42132867 42132936 -102149553 + L2 LINE L2 3233 3303 -10 22 0 0 0 chr12 42133222 42133244 -102149245 + AT_rich Low_complexity Low_complexity 1 22 0 1642 168 3 18 chr12 42133442 42133749 -102148740 + AluJb SINE Alu 1 303 0 273 127 0 109 chr12 42133827 42133882 -102148607 + FLAM SINE Alu 81 129 -4 4379 82 49 14 chr12 42133977 42134635 -102147854 - L1MA1 LINE L1 0 6302 5622 332 286 103 24 chr12 42135395 42135521 -102146968 - L2 LINE L2 0 3272 3137 233 312 144 8 chr12 42135887 42136012 -102146477 - L2 LINE L2 -566 2748 2607 21 57 0 0 chr12 42136715 42136750 -102145739 + AT_rich Low_complexity Low_complexity 1 35 0 494 160 28 0 chr12 42136926 42137032 -102145457 + L1MB3 LINE L1 6075 6183 0 260 162 0 118 chr12 42137537 42137605 -102144884 - L1MB8 LINE L1 -116 6062 6003 211 349 28 19 chr12 42137619 42137725 -102144764 + MER5A DNA MER1_type 38 144 -45 3790 202 42 10 chr12 42137884 42138811 -102143678 + Charlie1 DNA MER1_type 1564 2620 -141 318 257 62 0 chr12 42138861 42138974 -102143515 + MIR SINE MIR 86 205 -57 570 326 41 102 chr12 42139334 42139822 -102142667 - L2 LINE L2 0 3272 2815 204 158 0 0 chr12 42140820 42140858 -102141631 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 568 302 113 24 chr12 42140986 42141483 -102141006 + L1ME LINE L1 4404 4944 -1202 2020 229 23 32 chr12 42141538 42142063 -102140426 - MLT1F LTR MaLR -22 520 1 372 341 63 14 chr12 42142064 42142287 -102140202 + L1ME LINE L1 4994 5227 -919 660 259 141 73 chr12 42142303 42142515 -102139974 + L1ME LINE L1 5258 5454 -708 207 0 0 0 chr12 42142515 42142538 -102139951 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 660 259 141 73 chr12 42142538 42142843 -102139646 + L1ME LINE L1 5454 5810 -352 201 352 14 0 chr12 42143070 42143141 -102139348 - L2 LINE L2 0 3272 3201 2380 84 0 0 chr12 42143162 42143518 -102138971 + AluY SINE Alu 3 358 0 205 306 14 14 chr12 42143521 42143593 -102138896 - L2 LINE L2 -1863 1451 1380 571 122 304 0 chr12 42144475 42144590 -102137899 + FRAM SINE Alu 7 156 -20 431 319 150 9 chr12 42146620 42146833 -102135656 + MIR SINE MIR 20 262 0 485 284 94 69 chr12 42147370 42147818 -102134671 - MLT1J LTR MaLR -52 459 1 3003 189 127 108 chr12 42148124 42148682 -102133807 + L1MC3 LINE L1 6595 7141 -644 283 170 0 19 chr12 42148682 42148735 -102133754 + MLT1F1 LTR MaLR 67 118 -449 3003 189 127 108 chr12 42148735 42149294 -102133195 + L1MC3 LINE L1 7141 7785 0 1656 114 49 0 chr12 42150639 42150902 -102131587 - L1MB3 LINE L1 -2 6181 5906 909 186 0 19 chr12 42151257 42151418 -102131071 - AluJb SINE Alu -19 293 136 782 168 0 14 chr12 42151598 42151741 -102130748 - FLAM_C SINE Alu -2 141 1 207 0 0 0 chr12 42152844 42152867 -102129622 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 180 340 140 0 chr12 42153298 42153398 -102129091 - MIR SINE MIR -131 131 18 356 341 54 36 chr12 42154444 42154611 -102127878 - MIR SINE MIR -85 177 8 185 347 40 40 chr12 42155748 42155872 -102126617 - L2 LINE L2 -8 3264 3141 344 265 98 0 chr12 42156488 42156590 -102125899 - MLT1H LTR MaLR -227 322 211 180 179 0 0 chr12 42157027 42157066 -102125423 + T-rich Low_complexity Low_complexity 2 40 0 247 189 102 55 chr12 42157878 42157944 -102124545 - L1ME4a LINE L1 -30 6091 6030 631 174 0 30 chr12 42157944 42158076 -102124413 + FLAM_C SINE Alu 1 128 -5 247 189 102 55 chr12 42158076 42158136 -102124353 - L1ME4a LINE L1 -91 6030 5959 1614 148 8 77 chr12 42158137 42158508 -102123981 - MER4A LTR ERV1 0 664 261 596 124 21 10 chr12 42158508 42158605 -102123884 - MER4A LTR ERV1 -566 98 1 14822 103 57 22 chr12 42158613 42159648 -102122841 - MER4A-int LTR ERV1 -2 6596 5598 769 208 0 0 chr12 42159648 42159778 -102122711 - AluJ SINE Alu -172 130 1 14822 103 57 22 chr12 42159778 42161186 -102121303 - MER4A-int LTR ERV1 -1000 5598 4070 596 98 0 0 chr12 42161186 42161268 -102121221 + AluSg/x SINE Alu 218 299 -13 1120 121 12 6 chr12 42161363 42161529 -102120960 + AluSx SINE Alu 1 167 -145 723 119 7 53 chr12 42161529 42161680 -102120809 - MER4-int LTR ERV1 -2536 4062 3919 2684 118 68 32 chr12 42161686 42162243 -102120246 - MER4-int LTR ERV1 -3280 3318 2742 1025 196 147 0 chr12 42162247 42162471 -102120018 + LTR8 LTR ERV1 1 257 -434 761 150 0 0 chr12 42162472 42162605 -102119884 - MER4-int LTR ERV1 -4104 2494 2362 310 310 241 7 chr12 42162841 42162986 -102119503 + MER5A DNA MER1_type 11 189 0 376 21 0 0 chr12 42163311 42163358 -102119131 + MADE1 DNA Mariner 34 80 0 617 228 16 0 chr12 42163758 42163885 -102118604 - FLAM_C SINE Alu -14 129 1 25 51 0 0 chr12 42164678 42164717 -102117772 + AT_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr12 42165530 42165575 -102116914 + AT_rich Low_complexity Low_complexity 1 45 0 1935 149 3 0 chr12 42165943 42166238 -102116251 + AluSx SINE Alu 1 296 -16 280 212 76 61 chr12 42166768 42166900 -102115589 - HAL1b LINE L1 -465 883 750 29 0 0 0 chr12 42167090 42167119 -102115370 + AT_rich Low_complexity Low_complexity 1 29 0 230 319 26 0 chr12 42167241 42167354 -102115135 - HAL1 LINE L1 -827 1680 1565 448 248 128 0 chr12 42167387 42167520 -102114969 + L2 LINE L2 720 869 -2445 237 346 13 0 chr12 42167689 42167767 -102114722 - L2 LINE L2 -1 3271 3193 2302 208 49 18 chr12 42168069 42168617 -102113872 + MLT1F1 LTR MaLR 3 567 0 2501 65 0 3 chr12 42169471 42169779 -102112710 + AluY SINE Alu 3 309 -2 2261 107 7 0 chr12 42169878 42170188 -102112301 + AluSx SINE Alu 1 312 0 649 286 121 0 chr12 42170584 42170790 -102111699 + MIR SINE MIR 2 232 -30 201 254 0 0 chr12 42170806 42170865 -102111624 + (TAA)n Simple_repeat Simple_repeat 2 60 0 1703 190 31 68 chr12 42171724 42172082 -102110407 - MLT1C LTR MaLR 0 467 129 2045 109 4 4 chr12 42172082 42172387 -102110102 - AluSc SINE Alu 0 311 7 1703 190 31 68 chr12 42172387 42172512 -102109977 - MLT1C LTR MaLR -338 129 1 606 327 54 21 chr12 42173005 42173427 -102109062 - L2 LINE L2 -261 3052 2623 954 218 24 14 chr12 42173567 42173778 -102108711 + MLT1C LTR MaLR 59 271 -196 1852 191 3 27 chr12 42173779 42174150 -102108339 - MER57A LTR ERV1 0 403 42 570 155 54 143 chr12 42174153 42174321 -102108168 - LTR8A LTR ERV1 -6 721 569 2379 72 7 0 chr12 42174330 42174636 -102107853 - AluY SINE Alu -3 308 1 332 104 0 0 chr12 42174681 42174729 -102107760 - MER57A LTR ERV1 -353 50 3 259 301 53 26 chr12 42174729 42174837 -102107652 + MLT1C LTR MaLR 273 382 -85 1462 132 0 0 chr12 42174837 42175042 -102107447 + AluSg/x SINE Alu 83 287 -23 263 258 0 0 chr12 42176056 42176122 -102106367 + LTR37B LTR ERV1 7 72 -396 1748 148 3 35 chr12 42176172 42176482 -102106007 - AluSx SINE Alu -12 300 1 948 177 41 34 chr12 42176591 42176857 -102105632 + LTR37B LTR ERV1 201 468 0 22 56 0 0 chr12 42176990 42177026 -102105463 + AT_rich Low_complexity Low_complexity 1 36 0 1555 144 45 27 chr12 42177029 42177321 -102105168 - AluJo SINE Alu -6 306 10 4605 100 33 5 chr12 42177321 42177991 -102104498 + LTR8 LTR ERV1 3 691 0 3431 175 26 53 chr12 42178055 42178573 -102103916 - MER72 LTR ERV1 0 722 228 2409 72 0 3 chr12 42178573 42178880 -102103609 + AluY SINE Alu 4 309 -2 3431 175 26 53 chr12 42178880 42179103 -102103386 - MER72 LTR ERV1 -494 228 1 463 314 39 19 chr12 42179318 42179474 -102103015 - MIR SINE MIR -88 174 16 242 282 37 25 chr12 42179523 42179617 -102102872 - MIR SINE MIR -72 136 57 1691 168 7 7 chr12 42179827 42180140 -102102349 + AluJb SINE Alu 9 321 0 376 205 31 177 chr12 42180678 42180932 -102101557 + L1MC4 LINE L1 7808 8024 -18 4778 125 88 26 chr12 42180966 42181816 -102100673 + MER4D LTR ERV1 1 903 0 26 0 0 0 chr12 42181944 42181970 -102100519 + AT_rich Low_complexity Low_complexity 1 26 0 371 280 188 19 chr12 42181971 42182178 -102100311 - MIR SINE MIR -1 261 20 253 146 0 0 chr12 42182582 42182623 -102099866 - L2 LINE L2 -2 3311 3271 1629 164 33 4 chr12 42182893 42183167 -102099322 + AluJb SINE Alu 22 303 -9 396 284 37 9 chr12 42184554 42184663 -102097826 + MIR3 SINE MIR 56 167 -41 1661 128 151 120 chr12 42184680 42185072 -102097417 - MER4A LTR ERV1 0 664 261 565 134 21 10 chr12 42185072 42185169 -102097320 - MER4A LTR ERV1 -566 98 1 15435 124 48 37 chr12 42185170 42185866 -102096623 - MER4A-int LTR ERV1 0 6598 5911 1892 179 0 0 chr12 42185866 42186173 -102096316 - AluSx SINE Alu -5 307 1 15435 124 48 37 chr12 42186173 42188403 -102094086 - MER4A-int LTR ERV1 -687 5911 2152 2405 56 0 7 chr12 42188403 42188691 -102093798 - AluY SINE Alu -25 286 1 15435 124 48 37 chr12 42188691 42188986 -102093503 - MER4A-int LTR ERV1 -4446 2152 1862 1031 174 179 0 chr12 42188986 42189204 -102093285 + LTR8 LTR ERV1 1 257 -434 3730 97 103 13 chr12 42189204 42189883 -102092606 - MER4A-int LTR ERV1 -4103 2495 1756 4160 117 32 45 chr12 42189894 42190855 -102091634 - MER4A-int LTR ERV1 -5566 1192 189 1058 252 33 33 chr12 42190897 42191171 -102091318 - MER4A-int LTR ERV1 -4164 2167 1894 302 0 0 26 chr12 42191347 42191386 -102091103 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2182 92 74 34 chr12 42191396 42191835 -102090654 - MER4A-int LTR ERV1 -6035 563 43 1580 159 161 75 chr12 42191835 42192207 -102090282 - MER4A LTR ERV1 0 664 261 615 113 21 10 chr12 42192207 42192304 -102090185 - MER4A LTR ERV1 -566 98 1 228 306 122 20 chr12 42193548 42193695 -102088794 - L2 LINE L2 -1 3312 3151 220 186 47 0 chr12 42193777 42193820 -102088669 - MIR SINE MIR -48 214 170 1091 173 35 5 chr12 42193821 42194018 -102088471 - MLT1B LTR MaLR 0 390 188 315 0 0 0 chr12 42194021 42194056 -102088433 + (CA)n Simple_repeat Simple_repeat 2 36 0 219 167 0 0 chr12 42194056 42194098 -102088391 + GA-rich Low_complexity Low_complexity 1 42 0 328 364 48 15 chr12 42194707 42194913 -102087576 - L2 LINE L2 -1154 2160 1948 204 244 378 0 chr12 42194944 42195034 -102087455 - MIR SINE MIR -44 218 95 201 288 17 0 chr12 42195094 42195153 -102087336 - L2 LINE L2 -1407 1907 1848 192 341 49 0 chr12 42195363 42195445 -102087044 + MIR SINE MIR 2 87 -175 433 191 0 0 chr12 42195514 42195598 -102086891 - AluJ/FRAM SINE Alu -4 308 225 2013 161 9 75 chr12 42195742 42196040 -102086449 + Tigger2a DNA MER2_type 12 275 -2433 1816 157 3 24 chr12 42196040 42196334 -102086155 - AluJo SINE Alu -22 290 3 2013 161 9 75 chr12 42196334 42196464 -102086025 + Tigger2a DNA MER2_type 275 412 -22 230 215 0 31 chr12 42196450 42196515 -102085974 + AluJ/monomer SINE Alu 238 300 -2 * 1682 189 23 13 chr12 42197328 42197635 -102084854 + AluJo SINE Alu 1 310 -2 430 213 27 0 chr12 42197896 42197971 -102084518 + AluJ/FLAM SINE Alu 1 77 -225 4237 176 28 47 chr12 42197987 42199006 -102083483 + L1 LINE L1 3091 4089 -2057 30 69 0 0 chr12 42199171 42199229 -102083260 + AT_rich Low_complexity Low_complexity 1 58 0 1062 185 173 26 chr12 42200325 42200638 -102081851 - L1MB8 LINE L1 -1 6177 5819 284 224 0 15 chr12 42200638 42200689 -102081800 - AluS SINE Alu -14 287 238 970 141 13 56 chr12 42200689 42200897 -102081592 + THE1C LTR MaLR 1 209 -146 1991 108 3 46 chr12 42200897 42201258 -102081231 - AluSg SINE Alu 0 347 1 1248 132 14 18 chr12 42201260 42201479 -102081010 + THE1C LTR MaLR 155 372 -3 477 209 0 52 chr12 42201479 42201594 -102080895 - FAM SINE Alu -76 109 1 436 209 126 9 chr12 42201595 42201809 -102080680 - L1MB8 LINE L1 -298 5823 5575 203 318 141 0 chr12 42202364 42202449 -102080040 + L2 LINE L2 3175 3271 -1 26 74 0 0 chr12 42202528 42202582 -102079907 + AT_rich Low_complexity Low_complexity 1 54 0 242 235 39 0 chr12 42202584 42202635 -102079854 - MER57A LTR ERV1 -60 343 291 2166 116 7 0 chr12 42203332 42203624 -102078865 - AluJb SINE Alu -17 295 2 289 349 46 9 chr12 42203962 42204071 -102078418 + L2 LINE L2 3158 3270 -2 584 188 60 8 chr12 42204650 42204767 -102077722 + FLAM_C SINE Alu 1 123 -20 413 277 88 127 chr12 42206813 42207120 -102075369 + L2 LINE L2 2971 3265 -7 185 94 31 0 chr12 42208175 42208207 -102074282 + (CATA)n Simple_repeat Simple_repeat 3 35 0 278 179 34 51 chr12 42208221 42208338 -102074151 + (TTATA)n Simple_repeat Simple_repeat 5 119 0 561 134 21 10 chr12 42208347 42208444 -102074045 + MER4A LTR ERV1 1 98 -566 482 129 421 50 chr12 42208444 42208584 -102073905 + MER4A LTR ERV1 261 452 -212 13720 107 62 15 chr12 42208601 42209430 -102073059 + MER4-int LTR ERV1 3948 4737 -1861 2108 110 7 0 chr12 42209430 42209729 -102072760 - AluSg SINE Alu -9 301 1 13720 107 62 15 chr12 42209729 42211182 -102071307 + MER4-int LTR ERV1 4737 6337 -261 874 149 6 54 chr12 42211182 42211400 -102071089 + MER4B LTR ERV1 386 574 -90 1052 227 115 38 chr12 42211403 42211742 -102070747 - MLT1A1 LTR MaLR 0 365 1 1180 173 36 161 chr12 42211941 42212358 -102070131 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr12 42212435 42212457 -102070032 + AT_rich Low_complexity Low_complexity 1 22 0 455 330 80 70 chr12 42212487 42213103 -102069386 + L2 LINE L2 2260 2881 -433 1111 235 41 26 chr12 42213103 42213469 -102069020 + LTR16A LTR ERVL 26 450 0 244 282 233 0 chr12 42213684 42213787 -102068702 + L2 LINE L2 3138 3264 -8 267 296 232 0 chr12 42214904 42215029 -102067460 + L2 LINE L2 3119 3272 0 220 248 143 57 chr12 42215993 42216098 -102066391 + MIR SINE MIR 20 133 -75 244 289 135 10 chr12 42216104 42216208 -102066281 - L2 LINE L2 0 3313 3197 299 184 0 0 chr12 42216223 42216272 -102066217 - MER8 DNA MER2_type 0 239 191 1514 139 49 21 chr12 42216281 42216569 -102065920 + Tigger2 DNA MER2_type 2296 2591 -127 851 291 56 39 chr12 42217190 42217654 -102064835 - L1ME3A LINE L1 -329 5841 5370 416 128 43 0 chr12 42217675 42217764 -102064725 + (TA)n Simple_repeat Simple_repeat 2 95 0 1978 134 7 0 chr12 42217764 42218048 -102064441 - AluSx SINE Alu -26 286 1 289 275 125 45 chr12 42218074 42218272 -102064217 - L1ME3A LINE L1 -830 5316 5135 1651 199 3 3 chr12 42218272 42218579 -102063910 - AluJo SINE Alu -5 307 1 289 275 125 45 chr12 42218579 42218635 -102063854 - L1ME3A LINE L1 -1011 5135 5085 2119 114 7 13 chr12 42218635 42218941 -102063548 - AluSx SINE Alu -8 304 1 289 275 125 45 chr12 42218941 42219212 -102063277 - L1ME3A LINE L1 -1061 5085 4748 369 329 203 7 chr12 42219237 42219380 -102063109 + MER91A DNA MER1_type 20 190 -6 368 295 162 15 chr12 42219496 42219767 -102062722 - L1ME3A LINE L1 -1423 4723 4413 337 309 140 57 chr12 42219876 42220313 -102062176 - L1M4 LINE L1 -765 5381 4909 457 167 122 86 chr12 42220834 42221055 -102061434 - L1MC5 LINE L1 -32 7929 7701 434 245 39 106 chr12 42221152 42221360 -102061129 + MIR SINE MIR 13 206 -56 5427 174 15 32 chr12 42224700 42225230 -102057259 - L1MA4 LINE L1 -7 6293 5756 1506 165 0 39 chr12 42225230 42225485 -102057004 - AluJo SINE Alu -26 286 42 5427 174 15 32 chr12 42225485 42226289 -102056200 - L1MA4 LINE L1 -544 5756 4983 1862 221 13 33 chr12 42226473 42227279 -102055210 - L1M1 LINE L1 -565 5735 4939 261 0 0 0 chr12 42228421 42228450 -102054039 + (T)n Simple_repeat Simple_repeat 1 29 0 1975 133 0 37 chr12 42229738 42230062 -102052427 + AluJo SINE Alu 1 312 0 298 98 61 0 chr12 42230210 42230292 -102052197 + (TA)n Simple_repeat Simple_repeat 2 88 0 4076 154 7 45 chr12 42230412 42230679 -102051810 - L1MA4 LINE L1 -280 6020 5745 1506 165 0 39 chr12 42230679 42230934 -102051555 - AluJo SINE Alu -26 286 42 4076 154 7 45 chr12 42230934 42231783 -102050706 - L1MA4 LINE L1 -555 5745 4939 252 0 0 0 chr12 42232925 42232953 -102049536 + (T)n Simple_repeat Simple_repeat 1 28 0 2174 114 0 0 chr12 42233893 42234200 -102048289 - AluSc SINE Alu -2 307 1 610 142 25 0 chr12 42234537 42234657 -102047832 - L1MA9 LINE L1 0 6312 6190 1816 138 10 24 chr12 42234713 42235004 -102047485 + AluJo SINE Alu 1 287 -25 190 378 52 15 chr12 42235468 42235603 -102046886 + L2 LINE L2 2148 2287 -1027 325 317 42 28 chr12 42235738 42235880 -102046609 - MIR SINE MIR -13 249 106 225 0 0 0 chr12 42237347 42237372 -102045117 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 21 36 0 0 chr12 42240206 42240234 -102042255 + AT_rich Low_complexity Low_complexity 1 28 0 415 348 68 49 chr12 42240264 42240649 -102041840 - L2 LINE L2 0 3272 2881 217 231 48 77 chr12 42240747 42240851 -102041638 - L2 LINE L2 -450 2864 2764 204 40 0 0 chr12 42241513 42241538 -102040951 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 589 73 20 3 chr12 42242243 42242335 -102040154 - L1MC/D LINE L1 -580 5574 5507 201 178 0 0 chr12 42242413 42242458 -102040031 + (ATG)n Simple_repeat Simple_repeat 2 46 0 421 307 49 6 chr12 42242461 42242624 -102039865 - MIR SINE MIR -30 232 63 452 266 140 14 chr12 42243776 42243990 -102038499 - L1ME3A LINE L1 -224 5929 5689 25 0 0 0 chr12 42244065 42244090 -102038399 + AT_rich Low_complexity Low_complexity 1 25 0 1606 16 0 16 chr12 42244238 42244430 -102038059 + L1PA3 LINE L1 5967 6155 0 322 286 135 51 chr12 42244549 42244727 -102037762 - L1ME3A LINE L1 -917 5212 5020 774 286 159 45 chr12 42244905 42245610 -102036879 - L1ME3A LINE L1 -1333 4796 4012 24 53 0 0 chr12 42245630 42245668 -102036821 + AT_rich Low_complexity Low_complexity 1 38 0 30 45 0 0 chr12 42245733 42245777 -102036712 + AT_rich Low_complexity Low_complexity 1 44 0 264 268 63 28 chr12 42246003 42246145 -102036344 - L1ME3A LINE L1 -5264 855 709 225 260 0 0 chr12 42246427 42246477 -102036012 - L1ME3A LINE L1 -5973 146 97 303 247 0 41 chr12 42246944 42247041 -102035448 + L1MC4 LINE L1 6611 6703 -1339 690 192 0 0 chr12 42247041 42247299 -102035190 + (TA)n Simple_repeat Simple_repeat 1 258 0 277 371 14 14 chr12 42247301 42247441 -102035048 - MIR SINE MIR -74 188 49 2106 115 7 0 chr12 42249680 42249967 -102032522 + AluSq SINE Alu 3 291 -22 3388 89 2 0 chr12 42249973 42250435 -102032054 - L1PA10 LINE L1 -9 6159 5697 23 33 0 0 chr12 42250542 42250572 -102031917 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr12 42250656 42250696 -102031793 + AT_rich Low_complexity Low_complexity 1 40 0 27 49 0 0 chr12 42251978 42252019 -102030470 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr12 42252836 42252862 -102029627 + AT_rich Low_complexity Low_complexity 1 26 0 1686 180 32 0 chr12 42252862 42253145 -102029344 - AluJo SINE Alu -20 292 1 350 289 47 82 chr12 42253155 42253411 -102029078 - L1MC/D LINE L1 -1991 5817 5571 402 303 157 18 chr12 42254538 42254812 -102027677 - L2 LINE L2 0 3313 3002 1002 175 27 6 chr12 42255015 42255198 -102027291 + MER5A DNA MER1_type 2 188 -1 1888 141 10 13 chr12 42255633 42255945 -102026544 + AluJo SINE Alu 1 311 -1 213 164 0 55 chr12 42257376 42257431 -102025058 + (GGGTG)n Simple_repeat Simple_repeat 4 55 0 445 323 77 31 chr12 42257492 42257687 -102024802 + MIR SINE MIR 59 262 0 22 0 0 0 chr12 42258459 42258481 -102024008 + AT_rich Low_complexity Low_complexity 1 22 0 462 268 73 7 chr12 42258532 42258685 -102023804 + MIR SINE MIR 17 178 -62 207 324 156 69 chr12 42259613 42260018 -102022471 - L2 LINE L2 -4 3268 2829 233 318 34 0 chr12 42261019 42261107 -102021382 + (CCGTA)n Simple_repeat Simple_repeat 4 94 0 234 244 64 0 chr12 42261144 42261222 -102021267 - L2 LINE L2 -930 2384 2302 257 261 29 0 chr12 42261296 42261365 -102021124 - L1MD3 LINE L1 -233 7762 7692 363 299 95 7 chr12 42261518 42261665 -102020824 + L3 LINE CR1 1098 1257 -320 599 307 43 35 chr12 42261690 42261921 -102020568 - MIR SINE MIR 0 262 30 260 358 8 33 chr12 42262065 42262185 -102020304 + L3 LINE CR1 1261 1377 -200 219 221 15 44 chr12 42262303 42262371 -102020118 - MIR SINE MIR -134 128 63 222 404 11 0 chr12 42262394 42262488 -102020001 + L2 LINE L2 3152 3246 -26 415 265 12 6 chr12 42262591 42262761 -102019728 + AluJo SINE Alu 127 297 -15 294 128 51 0 chr12 42262926 42263004 -102019485 + (TA)n Simple_repeat Simple_repeat 1 82 0 1520 128 0 0 chr12 42263004 42263215 -102019274 - AluSg/x SINE Alu -26 284 74 29 28 0 0 chr12 42263787 42263823 -102018666 + AT_rich Low_complexity Low_complexity 1 36 0 745 75 0 120 chr12 42264272 42264425 -102018064 + AluSg/x SINE Alu 168 304 0 234 91 0 0 chr12 42265001 42265034 -102017455 + (CTCA)n Simple_repeat Simple_repeat 3 35 0 418 222 0 12 chr12 42315950 42316031 -101966458 - MER94 DNA DNA -53 81 2 375 344 96 23 chr12 42316282 42316710 -101965779 - MARNA DNA Mariner -13 573 115 24 0 0 0 chr12 42317628 42317652 -101964837 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 42317955 42317977 -101964512 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 42318225 42318256 -101964233 + AT_rich Low_complexity Low_complexity 1 31 0 225 337 11 22 chr12 42318796 42318885 -101963604 + MIR SINE MIR 16 103 -105 361 206 325 0 chr12 42319461 42319587 -101962902 + MIR3 SINE MIR 42 208 0 800 207 121 20 chr12 42320312 42320510 -101961979 - MER20 DNA MER1_type 0 219 2 22 0 0 0 chr12 42320569 42320591 -101961898 + AT_rich Low_complexity Low_complexity 1 22 0 222 371 91 8 chr12 42320898 42321030 -101961459 + MIR SINE MIR 14 156 -106 651 339 134 13 chr12 42322201 42322649 -101959840 - MLT1H1 LTR MaLR 0 555 54 739 282 11 5 chr12 42322835 42323023 -101959466 - MIR SINE MIR -49 213 25 254 299 94 17 chr12 42323023 42323140 -101959349 - L2 LINE L2 -92 3221 3096 579 270 94 0 chr12 42323601 42323760 -101958729 - MIR SINE MIR -52 210 37 376 288 90 0 chr12 42323790 42323901 -101958588 + MER5A DNA MER1_type 9 129 -60 21 36 0 0 chr12 42324175 42324203 -101958286 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 42324665 42324688 -101957801 + AT_rich Low_complexity Low_complexity 1 23 0 228 86 0 0 chr12 42324850 42324885 -101957604 + (TG)n Simple_repeat Simple_repeat 2 36 0 323 267 15 61 chr12 42327143 42327274 -101955215 + MIR SINE MIR 127 251 -11 293 241 24 24 chr12 42328522 42328605 -101953884 + L2 LINE L2 2747 2829 -485 1114 123 46 0 chr12 42328635 42328830 -101953659 - L1MA8 LINE L1 -3 6288 6085 1981 108 0 7 chr12 42329406 42329675 -101952814 + AluSg1 SINE Alu 1 267 -42 186 118 0 0 chr12 42329678 42329712 -101952777 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 873 197 17 34 chr12 42329824 42330002 -101952487 - MER20 DNA MER1_type -2 217 43 21 0 0 0 chr12 42330267 42330288 -101952201 + AT_rich Low_complexity Low_complexity 1 21 0 2534 61 0 6 chr12 42330584 42330896 -101951593 + AluY SINE Alu 2 311 0 339 288 71 71 chr12 42331714 42331884 -101950605 + MER5B DNA MER1_type 1 170 -8 22 0 0 0 chr12 42332872 42332894 -101949595 + AT_rich Low_complexity Low_complexity 1 22 0 324 188 29 14 chr12 42333151 42333220 -101949269 + MER5A DNA MER1_type 10 79 -110 580 228 43 25 chr12 42333716 42333878 -101948611 - HAL1b LINE L1 -438 910 746 552 176 0 0 chr12 42334148 42334239 -101948250 - FLAM_A SINE Alu -17 125 35 783 295 75 45 chr12 42334393 42334929 -101947560 - HAL1 LINE L1 -590 1917 1366 272 211 98 114 chr12 42335001 42335124 -101947365 - L2 LINE L2 -3 3310 3190 1572 96 36 0 chr12 42335889 42336108 -101946381 + MER30 DNA MER1_type 4 230 0 204 163 0 0 chr12 42337361 42337404 -101945085 + A-rich Low_complexity Low_complexity 1 43 0 331 306 52 20 chr12 42337937 42338189 -101944300 - L2 LINE L2 -337 2977 2718 333 343 9 0 chr12 42338241 42338349 -101944140 + MER117 DNA MER1_type 1 109 -88 2528 151 5 29 chr12 42338467 42338912 -101943577 - Tigger2a DNA MER2_type 0 434 1 184 328 75 0 chr12 42339485 42339552 -101942937 - MIR SINE MIR -183 79 8 579 312 104 11 chr12 42339991 42340270 -101942219 + L2 LINE L2 2449 2753 -561 373 247 27 67 chr12 42340484 42340634 -101941855 + L2 LINE L2 3126 3269 -44 209 366 59 10 chr12 42342166 42342267 -101940222 - L2 LINE L2 -35 3237 3132 185 300 20 0 chr12 42342432 42342482 -101940007 + L2 LINE L2 3263 3313 0 866 250 36 0 chr12 42344943 42345163 -101937326 + MER46C DNA MER2_type 1 228 -110 478 297 79 15 chr12 42345685 42345887 -101936602 - MIR SINE MIR 0 262 48 202 233 0 0 chr12 42346732 42346775 -101935714 + (CTA)n Simple_repeat Simple_repeat 1 43 0 443 356 58 4 chr12 42347035 42347260 -101935229 - MIR SINE MIR -19 243 7 327 250 11 65 chr12 42348295 42348387 -101934102 + L3 LINE CR1 1489 1575 -2 232 333 62 31 chr12 42348610 42348739 -101933750 + MIR SINE MIR 59 191 -71 23 33 0 0 chr12 42348995 42349025 -101933464 + AT_rich Low_complexity Low_complexity 1 30 0 616 244 65 72 chr12 42349423 42349474 -101933015 - L1MC4 LINE L1 0 8042 7992 2363 106 0 0 chr12 42349474 42349786 -101932703 + AluSx SINE Alu 1 312 0 616 244 65 72 chr12 42349786 42350013 -101932476 - L1MC4 LINE L1 -50 7992 7766 219 125 0 0 chr12 42350321 42350361 -101932128 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 192 227 23 0 chr12 42351629 42351673 -101930816 - L2 LINE L2 -5 3308 3264 2047 122 21 0 chr12 42351815 42352101 -101930388 + AluSx SINE Alu 2 293 -19 217 242 16 0 chr12 42352688 42352750 -101929739 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 657 291 90 57 chr12 42352858 42353649 -101928840 - L1M4 LINE L1 -786 5360 4534 1302 148 79 55 chr12 42353649 42353940 -101928549 - AluJo SINE Alu -4 298 1 657 291 90 57 chr12 42353940 42354057 -101928432 - L1M4 LINE L1 -1612 4534 4422 312 275 69 94 chr12 42354255 42354659 -101927830 - L1MEd LINE L1 -5723 396 3 1308 254 50 41 chr12 42356039 42356476 -101926013 - LTR16A1 LTR ERVL 0 457 17 10212 39 7 124 chr12 42356606 42358166 -101924323 - SVA Other Other -9 1377 1 180 0 0 0 chr12 42358980 42359000 -101923489 + (TA)n Simple_repeat Simple_repeat 2 21 0 24 53 0 0 chr12 42359047 42359085 -101923404 + AT_rich Low_complexity Low_complexity 1 38 0 1145 172 58 108 chr12 42359360 42359678 -101922811 - MER67D LTR ERV1 -1 513 237 2121 133 7 3 chr12 42359678 42359980 -101922509 - AluSq SINE Alu -10 303 1 1145 172 58 108 chr12 42359980 42360206 -101922283 - MER67D LTR ERV1 -277 237 1 205 417 92 0 chr12 42360390 42360510 -101921979 + L2 LINE L2 3142 3272 0 5949 140 35 27 chr12 42360949 42361912 -101920577 - L1MA4A LINE L1 -4 6299 5345 1694 195 17 0 chr12 42361912 42362204 -101920285 - AluJo SINE Alu -15 297 1 5949 140 35 27 chr12 42362204 42363269 -101919220 - L1MA4A LINE L1 -958 5345 4235 24 0 0 0 chr12 42364084 42364108 -101918381 + AT_rich Low_complexity Low_complexity 1 24 0 430 253 143 42 chr12 42364193 42364430 -101918059 + MIR SINE MIR 2 262 0 677 325 100 25 chr12 42364488 42364919 -101917570 + L2 LINE L2 2424 2886 -428 539 291 29 29 chr12 42365151 42365326 -101917163 + MER5B DNA MER1_type 4 178 0 864 193 6 0 chr12 42365480 42365641 -101916848 - L1PA16 LINE L1 -1 6165 6004 336 369 28 75 chr12 42366641 42366855 -101915634 - L2 LINE L2 -88 3184 2981 21 36 0 0 chr12 42369680 42369708 -101912781 + AT_rich Low_complexity Low_complexity 1 28 0 550 341 74 39 chr12 42370201 42370690 -101911799 + L2 LINE L2 2764 3268 -4 21 0 0 0 chr12 42371626 42371647 -101910842 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr12 42372028 42372061 -101910428 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr12 42375913 42375943 -101906546 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr12 42376070 42376091 -101906398 + AT_rich Low_complexity Low_complexity 1 21 0 281 289 225 0 chr12 42377924 42378066 -101904423 + MIR SINE MIR 10 183 -79 21 0 0 0 chr12 42378826 42378847 -101903642 + AT_rich Low_complexity Low_complexity 1 21 0 390 283 83 7 chr12 42378942 42379087 -101903402 - LTR16A LTR ERVL -239 211 56 4849 156 47 77 chr12 42379320 42379613 -101902876 + Tigger3b DNA MER2_type 1 301 -2727 2065 138 3 16 chr12 42379613 42379918 -101902571 - AluSx SINE Alu -11 301 1 4849 156 47 77 chr12 42379918 42380433 -101902056 + Tigger3b DNA MER2_type 301 758 -2270 1451 193 26 35 chr12 42380433 42380744 -101901745 + AluJb SINE Alu 5 312 0 4849 156 47 77 chr12 42380744 42381204 -101901285 + Tigger3b DNA MER2_type 758 1231 0 465 303 81 31 chr12 42381725 42382144 -101900345 + L1MEc LINE L1 895 1209 -4910 313 235 69 0 chr12 42382146 42382248 -101900241 + L1ME3 LINE L1 5846 5954 -216 266 245 32 32 chr12 42382348 42382442 -101900047 + L1ME3 LINE L1 5988 6081 -81 21 57 0 0 chr12 42382460 42382495 -101899994 + AT_rich Low_complexity Low_complexity 1 35 0 290 328 115 44 chr12 42382816 42383003 -101899486 - L2 LINE L2 -904 2410 2238 1844 139 61 76 chr12 42383003 42383399 -101899090 - MLT1B LTR MaLR 0 390 1 290 328 115 44 chr12 42383399 42383549 -101898940 - L2 LINE L2 -1076 2238 2049 39 80 0 0 chr12 42384175 42384263 -101898226 + AT_rich Low_complexity Low_complexity 1 88 0 1178 77 137 0 chr12 42384461 42384644 -101897845 + L1PA10 LINE L1 5957 6164 -4 2093 102 0 14 chr12 42385613 42385906 -101896583 - AluSg SINE Alu -21 289 1 757 287 82 40 chr12 42385949 42386277 -101896212 - L2 LINE L2 -2 3311 2970 4429 93 19 34 chr12 42386539 42386962 -101895527 + PABL_A LTR ERV1 1 412 -248 2253 106 0 3 chr12 42386962 42387263 -101895226 + AluY SINE Alu 1 300 -11 4429 93 19 34 chr12 42387263 42387508 -101894981 + PABL_A LTR ERV1 412 659 -1 218 300 43 0 chr12 42387561 42387631 -101894858 - L2 LINE L2 -307 3006 2934 993 98 0 0 chr12 42387639 42387772 -101894717 - THE1C LTR MaLR 0 375 243 5219 127 10 8 chr12 42387772 42388550 -101893939 + LTR17 LTR ERV1 1 780 0 4903 76 36 22 chr12 42388562 42389249 -101893240 + HERV17 LTR ERV1 11 707 -7919 5785 98 13 6 chr12 42389439 42390267 -101892222 + HERV17 LTR ERV1 703 1536 -7090 3779 71 2 0 chr12 42390447 42390924 -101891565 + HERV17 LTR ERV1 1537 2014 -6612 * 14150 60 4 1 chr12 42390909 42392656 -101889833 + HERV17 LTR ERV1 2430 4182 -4444 2369 68 0 0 chr12 42392649 42392941 -101889548 + HERV17 LTR ERV1 8335 8626 0 * 4586 121 71 8 chr12 42392941 42393675 -101888814 + LTR17 LTR ERV1 1 780 0 1685 115 4 0 chr12 42393676 42393920 -101888569 - THE1C LTR MaLR -130 245 1 4051 271 95 52 chr12 42393932 42395706 -101886783 - L2 LINE L2 -378 2936 1087 13720 145 36 5 chr12 42397842 42400187 -101882302 - Tigger1 DNA MER2_type 0 2418 2 23 68 0 0 chr12 42400966 42401010 -101881479 + AT_rich Low_complexity Low_complexity 1 44 0 379 321 15 15 chr12 42402178 42402309 -101880180 + L2 LINE L2 3141 3271 -1 2085 99 0 3 chr12 42405334 42405644 -101876845 + AluSc SINE Alu 1 309 0 359 281 59 37 chr12 42406158 42406293 -101876196 + MIR SINE MIR 74 211 -51 220 311 0 0 chr12 42406787 42406848 -101875641 - MIR SINE MIR -116 146 86 538 259 79 5 chr12 42406868 42407057 -101875432 - MER115 DNA AcHobo -25 668 466 631 306 99 45 chr12 42407114 42407467 -101875022 - MER115 DNA AcHobo -321 372 1 2148 178 106 52 chr12 42407827 42408301 -101874188 - MER67C LTR ERV1 -81 629 115 2320 104 3 0 chr12 42408301 42408608 -101873881 - AluSg SINE Alu 0 310 3 2148 178 106 52 chr12 42408608 42408729 -101873760 - MER67C LTR ERV1 -595 115 2 564 308 34 68 chr12 42408956 42409278 -101873211 - L2 LINE L2 0 3313 3003 1569 202 68 15 chr12 42409426 42409836 -101872653 - MSTB1 LTR MaLR 0 432 1 26 50 0 0 chr12 42410552 42410592 -101871897 + AT_rich Low_complexity Low_complexity 1 40 0 2299 134 11 26 chr12 42410853 42411234 -101871255 - THE1C LTR MaLR 0 375 1 751 342 125 10 chr12 42411603 42412018 -101870471 - MER115 DNA AcHobo -20 673 211 516 292 102 26 chr12 42413374 42413638 -101868851 - MER115 DNA AcHobo -23 670 387 1768 212 87 18 chr12 42414528 42415128 -101867361 - MER67C LTR ERV1 0 710 1 243 285 40 139 chr12 42415366 42415689 -101866800 - L2 LINE L2 -3 3310 3020 238 238 178 30 chr12 42417827 42417928 -101864561 + MIR SINE MIR 24 139 -69 222 37 0 0 chr12 42418568 42418595 -101863894 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr12 42423470 42423490 -101858999 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1275 228 26 4 chr12 42423490 42423762 -101858727 - AluJo SINE Alu -34 278 1 233 172 35 0 chr12 42423855 42423913 -101858576 + (CATA)n Simple_repeat Simple_repeat 4 63 0 291 269 157 22 chr12 42425544 42425678 -101856811 - MIR SINE MIR 0 262 111 504 105 0 13 chr12 42425689 42425765 -101856724 + MADE1 DNA Mariner 1 75 -5 183 338 149 0 chr12 42425766 42425840 -101856649 - MIR SINE MIR -160 102 18 4020 173 53 57 chr12 42426416 42427090 -101855399 - L1MA9 LINE L1 -38 6274 5599 2181 118 0 0 chr12 42427090 42427394 -101855095 - AluSx SINE Alu -7 305 2 4020 173 53 57 chr12 42427394 42428257 -101854232 - L1MA9 LINE L1 -713 5599 4743 1939 104 0 14 chr12 42429458 42429747 -101852742 + AluSg SINE Alu 1 285 -25 497 65 0 39 chr12 42430817 42430894 -101851595 - L1PA6 LINE L1 0 6154 6081 199 323 31 21 chr12 42430945 42431041 -101851448 - MIR3 SINE MIR -27 181 85 41 66 0 0 chr12 42432941 42433017 -101849472 + AT_rich Low_complexity Low_complexity 1 76 0 988 204 7 58 chr12 42433046 42433340 -101849149 - MER33 DNA MER1_type -1 323 45 2313 72 10 0 chr12 42434184 42434475 -101848014 - AluY SINE Alu -15 296 3 29 28 0 0 chr12 42434529 42434565 -101847924 + AT_rich Low_complexity Low_complexity 1 36 0 2378 89 0 6 chr12 42434869 42435182 -101847307 - AluSq SINE Alu -2 311 1 214 291 39 87 chr12 42436233 42436360 -101846129 + MIR SINE MIR 63 183 -79 23 33 0 0 chr12 42437119 42437149 -101845340 + AT_rich Low_complexity Low_complexity 1 30 0 253 307 48 84 chr12 42438319 42438485 -101844004 - MIR3 SINE MIR -10 198 39 262 320 99 39 chr12 42438562 42438743 -101843746 - MIR SINE MIR -50 212 21 27 0 0 0 chr12 42439144 42439171 -101843318 + AT_rich Low_complexity Low_complexity 1 27 0 2055 109 24 3 chr12 42439894 42440187 -101842302 + AluSg SINE Alu 1 299 -11 302 0 26 0 chr12 42440943 42440981 -101841508 + (TG)n Simple_repeat Simple_repeat 1 39 0 734 317 41 53 chr12 42441442 42441761 -101840728 + L2 LINE L2 2481 2795 -519 225 315 83 28 chr12 42441993 42442101 -101840388 + L2 LINE L2 3178 3291 -22 21 0 0 0 chr12 42442110 42442131 -101840358 + AT_rich Low_complexity Low_complexity 1 21 0 333 322 93 29 chr12 42442819 42443024 -101839465 - L2 LINE L2 -6 3266 3049 1942 156 0 9 chr12 42443296 42443611 -101838878 - AluJb SINE Alu 0 312 1 492 45 0 15 chr12 42444152 42444212 -101838277 + L1PA8 LINE L1 6095 6167 -5 415 0 0 0 chr12 42444212 42444258 -101838231 + (TAA)n Simple_repeat Simple_repeat 3 180 0 2163 92 0 0 chr12 42445639 42445967 -101836522 - AluY SINE Alu 0 328 1 422 321 22 8 chr12 42446449 42446583 -101835906 + MIR SINE MIR 29 164 -98 495 282 170 5 chr12 42446675 42446881 -101835608 - MIR SINE MIR 0 262 23 21 0 0 0 chr12 42447336 42447357 -101835132 + AT_rich Low_complexity Low_complexity 1 21 0 209 159 23 0 chr12 42448264 42448308 -101834181 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 241 177 48 0 chr12 42450980 42451042 -101831447 + (TA)n Simple_repeat Simple_repeat 1 65 0 1655 116 0 17 chr12 42452032 42452265 -101830224 - AluSq SINE Alu -84 229 1 21 0 0 0 chr12 42452590 42452611 -101829878 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr12 42452693 42452739 -101829750 + AT_rich Low_complexity Low_complexity 1 46 0 1167 49 18 0 chr12 42452895 42453058 -101829431 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 1052 213 9 0 chr12 42453084 42453295 -101829194 - AluJo SINE Alu -15 297 85 250 214 14 86 chr12 42453295 42453365 -101829124 - FRAM SINE Alu -52 114 50 21 0 0 0 chr12 42453821 42453842 -101828647 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr12 42453921 42453956 -101828533 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr12 42455951 42455983 -101826506 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr12 42456587 42456608 -101825881 + (TA)n Simple_repeat Simple_repeat 2 22 0 261 313 72 60 chr12 42457052 42457218 -101825271 - MIR SINE MIR -11 251 84 442 296 57 40 chr12 42459210 42459434 -101823055 - MIR SINE MIR -20 242 16 301 283 147 23 chr12 42459832 42460009 -101822480 + MIR SINE MIR 50 248 -14 412 320 14 41 chr12 42461642 42461789 -101820700 + MIR3 SINE MIR 3 145 -63 623 301 148 37 chr12 42461810 42462216 -101820273 - L2 LINE L2 0 3313 2863 288 305 116 0 chr12 42462434 42462529 -101819960 - L2 LINE L2 -10 3262 3157 26 0 0 0 chr12 42462595 42462621 -101819868 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr12 42462860 42462893 -101819596 + AT_rich Low_complexity Low_complexity 1 33 0 37 0 0 0 chr12 42463504 42463541 -101818948 + AT_rich Low_complexity Low_complexity 1 37 0 4735 99 40 3 chr12 42463547 42464256 -101818233 - L1MA1 LINE L1 -10 6292 5558 633 220 73 6 chr12 42465647 42465824 -101816665 + MER5A DNA MER1_type 1 189 0 576 251 217 0 chr12 42466373 42466636 -101815853 + MER5C DNA MER1_type 1 320 -4 26 0 0 0 chr12 42466962 42466988 -101815501 + AT_rich Low_complexity Low_complexity 1 26 0 808 225 46 8 chr12 42467169 42467409 -101815080 + L1MA6 LINE L1 6052 6300 0 530 283 25 40 chr12 42468913 42469111 -101813378 + L2 LINE L2 3118 3312 -1 28 61 0 0 chr12 42469962 42470011 -101812478 + AT_rich Low_complexity Low_complexity 1 49 0 818 163 29 38 chr12 42471608 42471817 -101810672 - L1M4 LINE L1 -955 5191 4985 2007 114 0 13 chr12 42471817 42472115 -101810374 - AluSg SINE Alu -16 294 1 728 286 82 43 chr12 42472158 42472487 -101810002 - L2 LINE L2 -2 3311 2970 4434 91 19 34 chr12 42472749 42473172 -101809317 + PABL_A LTR ERV1 1 412 -248 2259 107 0 0 chr12 42473172 42473472 -101809017 + AluY SINE Alu 1 300 -11 4434 91 19 34 chr12 42473472 42473717 -101808772 + PABL_A LTR ERV1 412 659 -1 212 300 43 0 chr12 42473770 42473840 -101808649 - L2 LINE L2 -307 3006 2934 952 97 0 8 chr12 42473848 42473982 -101808507 - THE1C LTR MaLR 0 375 243 1150 147 23 68 chr12 42473982 42474289 -101808200 + LTR17 LTR ERV1 1 293 -487 1768 212 87 18 chr12 42474770 42475370 -101807119 + MER67C LTR ERV1 1 710 0 201 275 11 33 chr12 42475673 42475764 -101806725 + CT-rich Low_complexity Low_complexity 4 92 0 23 0 0 0 chr12 42475792 42475815 -101806674 + AT_rich Low_complexity Low_complexity 1 23 0 390 342 79 31 chr12 42475911 42476265 -101806224 + MER115 DNA AcHobo 2 372 -321 538 259 79 5 chr12 42476322 42476511 -101805978 + MER115 DNA AcHobo 466 668 -25 220 311 0 0 chr12 42476531 42476592 -101805897 + MIR SINE MIR 86 146 -116 359 281 59 37 chr12 42477085 42477220 -101805269 - MIR SINE MIR -51 211 74 1946 113 3 3 chr12 42477734 42478043 -101804446 - AluSc SINE Alu 0 309 1 375 302 8 48 chr12 42479249 42479375 -101803114 - MIR3 SINE MIR -85 123 3 24 67 0 0 chr12 42480644 42480689 -101801800 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr12 42480776 42480797 -101801692 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 42481059 42481090 -101801399 + AT_rich Low_complexity Low_complexity 1 31 0 221 266 142 18 chr12 42481199 42481312 -101801177 - MIR SINE MIR -14 248 122 962 75 100 6 chr12 42481698 42481858 -101800631 + L1MA4A LINE L1 6125 6299 -4 210 417 92 0 chr12 42482297 42482417 -101800072 - L2 LINE L2 0 3272 3142 1108 157 37 46 chr12 42482601 42482817 -101799672 + MER67D LTR ERV1 1 214 -300 2111 108 24 3 chr12 42482827 42483122 -101799367 + AluSx SINE Alu 1 301 -11 379 321 15 15 chr12 42484126 42484257 -101798232 + L2 LINE L2 3141 3271 -1 497 65 0 39 chr12 42485730 42485807 -101796682 - L1PA6 LINE L1 0 6154 6081 199 323 31 21 chr12 42485858 42485954 -101796535 - MIR3 SINE MIR -27 181 85 1205 261 15 9 chr12 42487598 42487927 -101794562 - LTR43 LTR ERV1 -144 458 128 771 233 192 4 chr12 42488426 42488697 -101793792 + MER5C DNA MER1_type 1 322 -2 373 324 153 0 chr12 42488697 42488862 -101793627 + MIR SINE MIR 13 203 -59 2158 96 34 0 chr12 42488869 42489162 -101793327 - AluSq SINE Alu -10 303 1 30 0 0 0 chr12 42489166 42489196 -101793293 + AT_rich Low_complexity Low_complexity 1 30 0 392 276 59 35 chr12 42491060 42491230 -101791259 + MER5B DNA MER1_type 4 177 -1 636 224 92 6 chr12 42492098 42492272 -101790217 - MER53 DNA DNA 0 189 1 25 31 0 0 chr12 42492418 42492450 -101790039 + AT_rich Low_complexity Low_complexity 1 32 0 1526 172 10 20 chr12 42492937 42493233 -101789256 - MER67C LTR ERV1 -2 708 416 294 29 0 0 chr12 42494117 42494152 -101788337 + (TAA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr12 42494651 42494673 -101787816 + AT_rich Low_complexity Low_complexity 1 22 0 342 231 59 83 chr12 42494956 42495125 -101787364 + L1MC4a LINE L1 3829 3993 -2153 2016 110 28 14 chr12 42495129 42495419 -101787070 + AluSx SINE Alu 1 294 -18 747 172 83 12 chr12 42495421 42495540 -101786949 - L1MDa LINE L1 -6339 201 65 1978 152 64 31 chr12 42495540 42495960 -101786529 + Tigger2a DNA MER2_type 1 434 0 747 172 83 12 chr12 42495960 42496009 -101786480 - L1MDa LINE L1 -6475 65 21 360 320 73 21 chr12 42496316 42496763 -101785726 + L1MC4a LINE L1 4054 4521 -1625 758 209 14 0 chr12 42496767 42496906 -101785583 - MER68 LTR ERV1 -10 552 412 1931 268 103 64 chr12 42496907 42498072 -101784417 + L1MC4a LINE L1 5303 6522 -1286 1270 209 12 40 chr12 42498072 42498393 -101784096 + AluJo SINE Alu 1 312 0 1931 268 103 64 chr12 42498393 42498494 -101783995 + L1MC4a LINE L1 6522 6618 -1190 279 240 33 8 chr12 42498495 42498616 -101783873 + (TA)n Simple_repeat Simple_repeat 2 125 0 922 261 67 69 chr12 42498637 42499540 -101782949 + L1MC4 LINE L1 6637 7495 -547 245 261 65 76 chr12 42499693 42499785 -101782704 + MER5A DNA MER1_type 98 188 -1 261 83 0 0 chr12 42499975 42500011 -101782478 + (TCC)n Simple_repeat Simple_repeat 1 36 0 1275 239 27 24 chr12 42500996 42501326 -101781163 - LTR43 LTR ERV1 -144 458 128 359 118 15 15 chr12 42501460 42501528 -101780961 - LTR60 LTR ERV1 -518 68 1 242 341 34 0 chr12 42502465 42502553 -101779936 + MIR SINE MIR 93 183 -79 26 30 0 0 chr12 42504117 42504150 -101778339 + AT_rich Low_complexity Low_complexity 1 33 0 185 281 0 73 chr12 42504263 42504359 -101778130 - MIR SINE MIR -50 212 124 250 289 60 12 chr12 42504506 42504589 -101777900 + L2 LINE L2 3219 3305 -8 809 340 53 20 chr12 42504909 42505607 -101776882 + L2 LINE L2 2352 3079 -234 315 340 59 0 chr12 42505759 42505912 -101776577 + MIR SINE MIR 89 250 -12 479 236 132 0 chr12 42505956 42506062 -101776427 + FLAM_A SINE Alu 5 124 -9 1871 110 7 55 chr12 42519230 42519522 -101762967 - AluSx SINE Alu 0 312 35 360 23 0 0 chr12 42519618 42519661 -101762828 - MADE1 DNA Mariner -37 43 1 355 234 117 41 chr12 42519788 42519933 -101762556 - MIR SINE MIR -17 245 90 342 326 86 0 chr12 42520195 42520370 -101762119 - L2 LINE L2 -17 3296 3107 843 333 81 26 chr12 42520499 42521079 -101761410 - L2 LINE L2 -406 2908 2297 2318 87 0 3 chr12 42521680 42521979 -101760510 + AluSc SINE Alu 1 298 -11 23 68 0 0 chr12 42523241 42523285 -101759204 + AT_rich Low_complexity Low_complexity 1 44 0 2215 121 3 6 chr12 42523752 42524065 -101758424 - AluSx SINE Alu 0 312 1 218 211 19 19 chr12 42524138 42524190 -101758299 + L2 LINE L2 3189 3240 -73 289 277 72 0 chr12 42524385 42524468 -101758021 - MIR SINE MIR -95 167 79 228 336 88 8 chr12 42524923 42525048 -101757441 + L2 LINE L2 2926 3060 -212 1757 155 99 0 chr12 42526242 42526526 -101755963 - AluJb SINE Alu 0 312 1 1798 168 147 21 chr12 42529435 42529815 -101752674 - MSTA LTR MaLR 0 428 1 258 277 19 71 chr12 42529918 42530073 -101752416 + L2 LINE L2 3094 3240 -73 198 246 23 92 chr12 42532625 42532755 -101749734 + L2 LINE L2 3120 3240 -73 248 196 20 0 chr12 42534565 42534616 -101747873 - MADE1 DNA Mariner 0 80 29 262 176 20 0 chr12 42537519 42537570 -101744919 - MADE1 DNA Mariner 0 80 29 212 210 32 113 chr12 42538480 42538604 -101743885 + L2 LINE L2 3121 3234 -79 26 0 0 0 chr12 42539506 42539532 -101742957 + AT_rich Low_complexity Low_complexity 1 26 0 1159 198 37 30 chr12 42539747 42539883 -101742606 + L1MA6 LINE L1 5999 6133 -167 2685 106 28 8 chr12 42539883 42540240 -101742249 - THE1B LTR MaLR 0 364 1 1159 198 37 30 chr12 42540240 42540390 -101742099 + L1MA6 LINE L1 6133 6296 -4 468 278 26 42 chr12 42541896 42542087 -101740402 + L2 LINE L2 3117 3304 -9 1053 100 7 0 chr12 42544420 42544570 -101737919 - L1PA8A LINE L1 -169 5962 5812 186 43 0 0 chr12 42545380 42545403 -101737086 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 242 219 27 0 chr12 42547196 42547269 -101735220 - L1MD3 LINE L1 0 7995 7921 210 130 74 37 chr12 42547526 42547580 -101734909 + CT-rich Low_complexity Low_complexity 5 60 0 194 218 0 18 chr12 42548514 42548569 -101733920 + CT-rich Low_complexity Low_complexity 2 55 0 189 0 0 0 chr12 42548651 42548672 -101733817 + (A)n Simple_repeat Simple_repeat 1 21 0 21 82 0 0 chr12 42550028 42550077 -101732412 + AT_rich Low_complexity Low_complexity 1 49 0 318 87 0 0 chr12 42550553 42550599 -101731890 + (T)n Simple_repeat Simple_repeat 1 46 0 209 293 0 9 chr12 42553162 42553278 -101729211 + CT-rich Low_complexity Low_complexity 3 117 0 536 204 0 33 chr12 42553305 42553486 -101729003 + CT-rich Low_complexity Low_complexity 3 177 0 180 0 0 0 chr12 42553727 42553747 -101728742 + (T)n Simple_repeat Simple_repeat 1 20 0 243 220 17 17 chr12 42555490 42555549 -101726940 + CT-rich Low_complexity Low_complexity 3 61 0 21 0 0 0 chr12 42558436 42558457 -101724032 + AT_rich Low_complexity Low_complexity 1 21 0 209 293 0 9 chr12 42560161 42560277 -101722212 + CT-rich Low_complexity Low_complexity 3 117 0 515 210 0 33 chr12 42560304 42560485 -101722004 + CT-rich Low_complexity Low_complexity 3 177 0 252 59 0 0 chr12 42563018 42563052 -101719437 + (TG)n Simple_repeat Simple_repeat 1 34 0 1418 39 0 11 chr12 42568497 42568543 -101713946 + (TTTC)n Simple_repeat Simple_repeat 1 225 0 1418 39 0 11 chr12 42568543 42568725 -101713764 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8815 55 1 0 chr12 42568810 42570630 -101711859 - L1PA5 LINE L1 -3 6151 4334 189 0 0 0 chr12 42572564 42572585 -101709904 + (T)n Simple_repeat Simple_repeat 1 21 0 255 209 15 0 chr12 42573135 42573202 -101709287 - L1MD3 LINE L1 0 7995 7928 273 57 0 0 chr12 42573528 42573563 -101708926 + (TCC)n Simple_repeat Simple_repeat 2 36 0 207 182 0 0 chr12 42576031 42576064 -101706425 + (TG)n Simple_repeat Simple_repeat 1 33 0 1914 130 22 0 chr12 42576669 42576938 -101705551 + AluSx SINE Alu 1 275 -37 665 294 48 16 chr12 42577237 42577485 -101705004 - MIR SINE MIR 0 262 7 309 155 0 0 chr12 42578177 42578235 -101704254 + (TA)n Simple_repeat Simple_repeat 2 59 0 22 35 0 0 chr12 42578265 42578294 -101704195 + AT_rich Low_complexity Low_complexity 1 29 0 1891 140 7 33 chr12 42578294 42578594 -101703895 - AluSx SINE Alu -20 292 1 25 51 0 0 chr12 42580266 42580305 -101702184 + AT_rich Low_complexity Low_complexity 1 39 0 11114 186 15 20 chr12 42580425 42583614 -101698875 - L1PA16 LINE L1 -49 6117 2947 780 140 0 0 chr12 42583615 42583722 -101698767 - U6 snRNA snRNA 0 107 1 709 275 48 54 chr12 42583727 42584165 -101698324 - L1PA15-16 LINE L1 -3544 3305 2865 210 229 0 0 chr12 42584645 42584693 -101697796 + CT-rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr12 42585538 42585566 -101696923 + AT_rich Low_complexity Low_complexity 1 28 0 1805 129 0 0 chr12 42585866 42586114 -101696375 - AluSx SINE Alu -64 248 1 211 320 188 6 chr12 42586134 42586315 -101696174 - MIR SINE MIR -11 251 38 180 111 0 0 chr12 42586315 42586342 -101696147 + (TAA)n Simple_repeat Simple_repeat 2 28 0 806 282 60 5 chr12 42586363 42586579 -101695910 - MIR SINE MIR -26 236 9 946 201 70 4 chr12 42588933 42589162 -101693327 + MER58B DNA MER1_type 74 317 -24 188 289 216 31 chr12 42589244 42589438 -101693051 + L3 LINE CR1 1301 1530 -47 1222 198 8 38 chr12 42589459 42589722 -101692767 - MLT1B LTR MaLR -4 386 132 343 230 44 89 chr12 42590103 42590238 -101692251 + MLT1H LTR MaLR 421 549 0 197 122 49 0 chr12 42590600 42590641 -101691848 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 201 119 48 0 chr12 42590785 42590827 -101691662 + (TA)n Simple_repeat Simple_repeat 1 44 0 432 348 59 31 chr12 42592704 42593026 -101689463 + L2 LINE L2 2914 3244 -28 326 195 12 0 chr12 42593071 42593153 -101689336 + (TGGA)n Simple_repeat Simple_repeat 2 84 0 546 79 0 0 chr12 42593174 42593250 -101689239 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 459 189 24 0 chr12 42593277 42593404 -101689085 + (TGGA)n Simple_repeat Simple_repeat 3 132 0 186 236 0 0 chr12 42593684 42593739 -101688750 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 247 258 151 43 chr12 42594480 42594573 -101687916 - MIR SINE MIR -86 122 20 24 39 0 0 chr12 42595051 42595077 -101687412 + AT_rich Low_complexity Low_complexity 1 26 0 1230 206 12 4 chr12 42595077 42595334 -101687155 - L1PA3 LINE L1 -3 6152 5894 484 206 118 29 chr12 42596125 42596295 -101686194 + MIR SINE MIR 6 190 -72 521 285 5 55 chr12 42596672 42596769 -101685720 - L2 LINE L2 0 3313 3230 2426 178 77 23 chr12 42596769 42597248 -101685241 - MLT1D LTR MaLR 0 505 1 521 285 5 55 chr12 42597248 42597350 -101685139 - L2 LINE L2 -83 3230 3124 310 251 96 54 chr12 42597527 42597694 -101684795 - L2 LINE L2 -491 2823 2650 419 301 42 34 chr12 42598144 42598349 -101684140 - MIR SINE MIR -27 235 30 280 277 147 23 chr12 42598761 42598938 -101683551 + MIR SINE MIR 50 248 -14 529 231 37 0 chr12 42599420 42599528 -101682961 - AluJb SINE Alu -193 119 8 1039 159 0 22 chr12 42599541 42599723 -101682766 - AluJb SINE Alu -1 311 134 955 233 46 21 chr12 42603033 42603273 -101679216 - MIR SINE MIR 0 262 17 1666 170 0 17 chr12 42603651 42604027 -101678462 - AluSq SINE Alu 0 371 1 667 241 58 126 chr12 42604096 42604459 -101678030 + MLT1F1 LTR MaLR 4 359 -208 319 229 12 60 chr12 42604828 42604911 -101677578 - MER81 DNA DNA -12 102 24 407 234 80 7 chr12 42605274 42605411 -101677078 + MIR SINE MIR 81 227 -35 335 267 26 26 chr12 42605405 42605521 -101676968 + MER5A DNA MER1_type 24 139 -50 * 272 269 0 43 chr12 42606481 42606574 -101675915 + MIR3 SINE MIR 118 206 -2 769 162 172 59 chr12 42606840 42607014 -101675475 - MER20 DNA MER1_type 0 219 27 272 250 218 32 chr12 42607629 42607785 -101674704 + L2 LINE L2 2915 3099 -173 1115 209 87 9 chr12 42607876 42608338 -101674151 + MLT1F LTR MaLR 3 529 -13 232 78 255 0 chr12 42608815 42608866 -101673623 + AluJ/FRAM SINE Alu 217 280 -22 267 54 0 0 chr12 42608872 42608909 -101673580 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 207 184 0 0 chr12 42608961 42608999 -101673490 - L2 LINE L2 -10 3303 3266 1759 201 65 40 chr12 42609032 42609480 -101673009 - MLT1C LTR MaLR -4 463 5 811 215 51 0 chr12 42609537 42609751 -101672738 + AluSp SINE Alu 2 226 -87 556 76 0 0 chr12 42612647 42612713 -101669776 - AluSc SINE Alu -90 219 154 319 159 63 32 chr12 42612715 42612778 -101669711 + MLT1F1 LTR MaLR 325 389 -1 1044 237 83 66 chr12 42612779 42613201 -101669288 + L1ME3A LINE L1 5737 6165 -5 1219 172 0 27 chr12 42613213 42613434 -101669055 + AluJb SINE Alu 87 301 -11 477 234 17 57 chr12 42613782 42613957 -101668532 + L1MD1 LINE L1 4599 4766 -1380 * 3131 160 22 46 chr12 42613955 42614588 -101667901 + L1MD1 LINE L1 5350 5967 -275 413 240 21 42 chr12 42614589 42614685 -101667804 + FLAM_A SINE Alu 2 95 -47 1856 115 0 0 chr12 42615120 42615380 -101667109 - AluSq SINE Alu -53 260 1 341 272 89 95 chr12 42615712 42616215 -101666274 + L1M2 LINE L1 760 1259 -5590 352 291 34 115 chr12 42616448 42616891 -101665598 - L2 LINE L2 -831 2483 2077 970 102 109 0 chr12 42617596 42617743 -101664746 + L1MA1 LINE L1 6140 6302 0 21 0 0 0 chr12 42617743 42617764 -101664725 + AT_rich Low_complexity Low_complexity 1 21 0 2321 185 27 59 chr12 42619459 42619983 -101662506 - MER67D LTR ERV1 0 514 8 558 239 72 17 chr12 42620345 42620525 -101661964 + L1MA10 LINE L1 6145 6334 0 890 115 49 83 chr12 42620695 42620911 -101661578 + L1MA8 LINE L1 5948 6167 -138 21 0 0 0 chr12 42620957 42620978 -101661511 + AT_rich Low_complexity Low_complexity 1 21 0 225 178 0 0 chr12 42622604 42622649 -101659840 - LTR66 LTR ERVL -171 439 395 * 242 170 0 0 chr12 42622614 42622661 -101659828 + LTR66 LTR ERVL 394 440 -170 1977 135 0 3 chr12 42622704 42622986 -101659503 - AluSx SINE Alu -31 281 1 1098 31 0 0 chr12 42624236 42624363 -101658126 - L1PA4 LINE L1 -3 6152 6026 413 332 58 17 chr12 42624717 42625009 -101657480 - L2 LINE L2 -784 2530 2227 283 128 58 0 chr12 42626287 42626373 -101656116 + (TA)n Simple_repeat Simple_repeat 2 92 0 2312 109 0 0 chr12 42627801 42628114 -101654375 + AluSq SINE Alu 1 313 0 22 0 0 0 chr12 42628759 42628781 -101653708 + AT_rich Low_complexity Low_complexity 1 22 0 282 298 142 51 chr12 42631101 42631511 -101650978 + L2 LINE L2 1936 2382 -932 1733 107 4 12 chr12 42631559 42631811 -101650678 + AluSc SINE Alu 44 293 -16 448 359 20 34 chr12 42633403 42633701 -101648788 - ERVL LTR ERVL -2075 3689 3396 573 279 164 28 chr12 42634158 42634445 -101648044 - MLT1J LTR MaLR -33 478 153 186 321 24 36 chr12 42634500 42634584 -101647905 - MER5B DNA MER1_type -17 161 79 262 331 50 8 chr12 42634584 42634705 -101647784 - ERVL LTR ERVL -3175 2589 2464 1092 279 97 19 chr12 42634705 42635118 -101647371 + LTR16A LTR ERVL 1 445 -5 315 339 8 16 chr12 42635123 42635247 -101647242 - ERVL LTR ERVL -3225 2429 2307 436 297 40 20 chr12 42635604 42635752 -101646737 + L2 LINE L2 3162 3312 -1 25 31 0 0 chr12 42635851 42635883 -101646606 + AT_rich Low_complexity Low_complexity 1 32 0 401 295 26 51 chr12 42636031 42636127 -101646362 + MIR SINE MIR 9 101 -161 3931 168 46 1 chr12 42636127 42636822 -101645667 - L1MB7 LINE L1 -5 6179 5454 401 295 26 51 chr12 42636822 42636881 -101645608 + MIR SINE MIR 101 160 -102 24 77 0 0 chr12 42637244 42637296 -101645193 + AT_rich Low_complexity Low_complexity 1 52 0 203 250 10 96 chr12 42637564 42637668 -101644821 + MIR SINE MIR 143 237 -25 1789 188 3 3 chr12 42639389 42639687 -101642802 + AluJo SINE Alu 1 298 -14 364 220 76 50 chr12 42639709 42639883 -101642606 - MLT1I LTR MaLR 0 409 278 240 319 121 0 chr12 42639912 42640003 -101642486 - MLT1I LTR MaLR -196 213 112 690 233 7 31 chr12 42640081 42640272 -101642217 + LTR28 LTR ERV1 1 174 -462 630 266 47 22 chr12 42640293 42640537 -101641952 + MER52A LTR ERV1 286 1229 -29 1975 150 55 33 chr12 42640882 42641249 -101641240 - THE1C LTR MaLR 0 375 1 10479 127 39 7 chr12 42641249 42642781 -101639708 - THE1C-int LTR MaLR 0 1580 1 2002 155 52 30 chr12 42642781 42643148 -101639341 - THE1C LTR MaLR 0 375 1 356 331 159 21 chr12 42643165 42643455 -101639034 - L2 LINE L2 -412 2902 2573 395 235 173 39 chr12 42643503 42643682 -101638807 + MER93a LTR ERV1 200 402 0 606 223 88 31 chr12 42643716 42643927 -101638562 + L1MC5 LINE L1 7028 7248 -728 262 242 48 48 chr12 42643992 42644116 -101638373 + L1MC5 LINE L1 7235 7358 -603 261 310 100 26 chr12 42644170 42644480 -101638009 + L1MC5 LINE L1 7453 7785 -176 1471 210 52 35 chr12 42645461 42645662 -101636827 - MLT1A1 LTR MaLR 0 365 154 2108 124 0 17 chr12 42645662 42645961 -101636528 - AluSq SINE Alu -19 294 1 1471 210 52 35 chr12 42645961 42646106 -101636383 - MLT1A1 LTR MaLR -211 154 13 274 300 30 10 chr12 42647081 42647181 -101635308 - L2 LINE L2 -265 3048 2947 191 36 36 0 chr12 42647203 42647231 -101635258 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 209 291 38 0 chr12 42647276 42647355 -101635134 - L2 LINE L2 -469 2845 2764 187 269 96 0 chr12 42647390 42647442 -101635047 - L2 LINE L2 -625 2689 2633 2169 171 45 88 chr12 42649193 42649725 -101632764 + LTR22 LTR ERVK 1 509 0 937 154 23 11 chr12 42650368 42650543 -101631946 + MER73 LTR ERVL 1 177 -467 490 165 12 12 chr12 42650553 42650638 -101631851 + MLT1D LTR MaLR 324 408 -97 2807 152 31 6 chr12 42650641 42651122 -101631367 + MER73 LTR ERVL 152 644 0 450 319 22 7 chr12 42651339 42651477 -101631012 - MIR3 SINE MIR -49 159 20 1336 254 39 16 chr12 42651564 42651946 -101630543 + L1ME3A LINE L1 5567 5957 -213 1113 164 122 77 chr12 42652095 42652381 -101630108 + MER46C DNA MER2_type 17 315 -23 1678 212 49 47 chr12 42652401 42652861 -101629628 + MLT1D LTR MaLR 1 467 0 248 216 9 27 chr12 42652863 42652974 -101629515 + (TA)n Simple_repeat Simple_repeat 1 109 0 2019 122 31 3 chr12 42653045 42653339 -101629150 + AluSg SINE Alu 1 302 -8 251 53 0 26 chr12 42653342 42653380 -101629109 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 299 181 184 11 chr12 42653411 42653512 -101628977 - MLT1H LTR MaLR 0 549 439 454 291 215 16 chr12 42653524 42653775 -101628714 - MLT1H LTR MaLR -226 323 23 1459 108 24 5 chr12 42654017 42654189 -101628300 - AluY SINE Alu -10 301 123 393 39 0 0 chr12 42654189 42654240 -101628249 + (TG)n Simple_repeat Simple_repeat 2 52 0 1459 108 24 5 chr12 42654240 42654280 -101628209 - AluY SINE Alu -188 123 85 3447 127 63 14 chr12 42654422 42655058 -101627431 - L1MA6 LINE L1 0 6300 5634 5695 155 12 15 chr12 42655060 42656428 -101626061 + L1M2 LINE L1 4332 5697 -603 1214 322 132 20 chr12 42657637 42658729 -101623760 - L2 LINE L2 -4 3309 2104 4062 138 25 24 chr12 42659571 42660293 -101622196 - L1MA9 LINE L1 -5 6307 5585 986 236 42 21 chr12 42660836 42661077 -101621412 - MIR SINE MIR 0 262 17 339 25 0 0 chr12 42662038 42662078 -101620411 + (TA)n Simple_repeat Simple_repeat 2 41 0 191 170 21 0 chr12 42662613 42662660 -101619829 + (TA)n Simple_repeat Simple_repeat 1 48 0 2911 210 92 14 chr12 42664285 42665407 -101617082 + L1M4 LINE L1 4459 5664 -520 2009 191 79 85 chr12 42665385 42665887 -101616602 + L1MB7 LINE L1 5531 6030 -154 * 2298 162 65 69 chr12 42665887 42666394 -101616095 + MLT1D LTR MaLR 1 505 0 2009 191 79 85 chr12 42666394 42666539 -101615950 + L1MB7 LINE L1 6030 6174 -10 254 331 22 66 chr12 42667217 42667353 -101615136 - MLT1J LTR MaLR -68 443 314 21734 171 54 18 chr12 42667524 42671355 -101611134 - L1PA11 LINE L1 0 7612 3920 433 143 39 0 chr12 42671355 42671432 -101611057 - MADE1 DNA Mariner 0 80 1 21734 171 54 18 chr12 42671432 42673898 -101608591 - L1PA11 LINE L1 -3692 3920 7 493 206 155 0 chr12 42674138 42674235 -101608254 + MER44D DNA MER2_type 1 382 -227 367 187 0 49 chr12 42674246 42674332 -101608157 + L1P3 LINE L1 212 1410 -5588 945 181 50 36 chr12 42674332 42674553 -101607936 + MER44D DNA MER2_type 382 605 0 239 186 0 0 chr12 42674719 42674762 -101607727 - MLT1J2 LTR MaLR -326 124 82 199 342 13 0 chr12 42675245 42675324 -101607165 - L3 LINE CR1 -151 1426 1347 220 309 98 0 chr12 42676149 42676272 -101606217 - MIR SINE MIR -48 214 80 2014 105 0 41 chr12 42677047 42677365 -101605124 - AluSx SINE Alu 0 306 1 225 0 0 0 chr12 42677426 42677451 -101605038 + (CA)n Simple_repeat Simple_repeat 2 26 0 378 147 14 28 chr12 42677582 42677725 -101604764 + (TA)n Simple_repeat Simple_repeat 1 141 0 1945 207 109 15 chr12 42678129 42678718 -101603771 + LTR48B LTR ERV1 1 644 0 1011 333 123 27 chr12 42678870 42679602 -101602887 + L2 LINE L2 2150 2951 -363 2878 122 125 119 chr12 42679602 42680888 -101601601 + pTR5 LTR ERV1 744 2417 -21 258 333 9 18 chr12 42680888 42681002 -101601487 + L2 LINE L2 2946 3058 -255 1875 141 10 17 chr12 42681787 42682085 -101600404 + AluJo SINE Alu 1 296 -16 238 338 103 24 chr12 42682394 42682607 -101599882 + L2 LINE L2 2829 3058 -214 694 354 59 29 chr12 42682869 42683440 -101599049 - L2 LINE L2 -257 3015 2431 2296 54 6 54 chr12 42683658 42683972 -101598517 + AluY SINE Alu 1 299 -12 217 132 0 0 chr12 42684511 42684549 -101597940 + (A)n Simple_repeat Simple_repeat 1 38 0 2090 128 138 8 chr12 42684965 42685341 -101597148 - MSTB1 LTR MaLR -4 428 4 1600 190 31 3 chr12 42685508 42685798 -101596691 + AluJb SINE Alu 1 298 -14 2236 91 37 0 chr12 42686034 42686331 -101596158 + AluSq SINE Alu 1 308 -5 2085 243 109 12 chr12 42686917 42687571 -101594918 - MER50 LTR ERV1 -1 733 17 3152 149 12 43 chr12 42687699 42688277 -101594212 - MER34B LTR ERV1 -5 560 1 331 191 36 0 chr12 42689104 42689188 -101593301 + L1MB7 LINE L1 6091 6177 -7 204 222 0 0 chr12 42689442 42689487 -101593002 + A-rich Low_complexity Low_complexity 5 49 0 885 32 32 0 chr12 42689581 42689705 -101592784 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 1904 143 4 0 chr12 42689705 42689984 -101592505 - AluSx SINE Alu -32 280 1 1001 321 81 25 chr12 42690930 42691525 -101590964 + MERVL LTR ERVL 4069 4696 -789 494 213 8 8 chr12 42691539 42691666 -101590823 - MER104 DNA Tc2 -7 173 47 288 0 0 0 chr12 42691861 42691893 -101590596 + (TTA)n Simple_repeat Simple_repeat 2 33 0 253 208 21 0 chr12 42692259 42692307 -101590182 + MERVL LTR ERVL 4903 4951 -813 440 301 46 32 chr12 42692382 42692598 -101589891 + MERVL LTR ERVL 5043 5261 -503 384 22 0 0 chr12 42692772 42692817 -101589672 + (TG)n Simple_repeat Simple_repeat 2 46 0 1209 168 0 38 chr12 42692818 42693027 -101589462 - AluJo SINE Alu -31 281 81 408 243 107 45 chr12 42693106 42693283 -101589206 - MLT1J LTR MaLR -35 476 289 454 213 35 78 chr12 42693836 42693977 -101588512 - MER58B DNA MER1_type -16 325 191 1435 254 79 29 chr12 42695234 42695883 -101586606 - L1M4 LINE L1 -919 5227 4547 1922 137 56 31 chr12 42696265 42696624 -101585865 - THE1C LTR MaLR 0 375 8 4121 101 5 3 chr12 42696624 42697201 -101585288 + MER41B LTR ERV1 1 578 -57 12658 53 1 1 chr12 42697221 42699585 -101582904 - L1PA5 LINE L1 -2 6152 3791 20342 100 10 9 chr12 42699586 42702492 -101579997 - L1PA5 LINE L1 -3223 2923 14 307 192 0 51 chr12 42702492 42702570 -101579919 + MER41A LTR ERV1 474 547 -7 536 218 40 98 chr12 42704453 42704678 -101577811 + MER58C DNA MER1_type 2 213 -2 441 58 159 0 chr12 42705069 42705138 -101577351 + MADE1 DNA Mariner 1 80 0 23 68 0 0 chr12 42707541 42707585 -101574904 + AT_rich Low_complexity Low_complexity 1 44 0 30 0 0 0 chr12 42707738 42707768 -101574721 + AT_rich Low_complexity Low_complexity 1 30 0 279 222 11 56 chr12 42708537 42708627 -101573862 + GA-rich Low_complexity Low_complexity 3 88 0 375 307 43 21 chr12 42708642 42708782 -101573707 - MIR SINE MIR -20 242 100 3394 185 36 18 chr12 42709170 42709884 -101572605 - LTR8A LTR ERV1 0 727 1 2476 207 14 21 chr12 42710346 42711053 -101571436 - LTR27 LTR ERV1 -2 634 3 4019 292 112 30 chr12 42711123 42713083 -101569406 + L2 LINE L2 1214 3313 0 2361 85 0 3 chr12 42713275 42713570 -101568919 - AluSq SINE Alu -14 299 6 1573 180 19 12 chr12 42713909 42714231 -101568258 - MER33 DNA MER1_type 0 324 1 34 42 0 0 chr12 42714255 42714303 -101568186 + AT_rich Low_complexity Low_complexity 1 48 0 2377 96 0 0 chr12 42714303 42714604 -101567885 - AluY SINE Alu -10 301 1 447 256 46 95 chr12 42714712 42714997 -101567492 + LTR37B LTR ERV1 198 468 0 212 234 0 0 chr12 42715591 42715638 -101566851 + GA-rich Low_complexity Low_complexity 2 48 0 254 307 132 9 chr12 42716509 42716623 -101565866 - MIR SINE MIR -43 219 92 490 277 86 22 chr12 42716796 42717063 -101565426 + LTR33A LTR ERVL 227 510 -13 1291 180 99 37 chr12 42717166 42717460 -101565029 - AluJb SINE Alu 0 312 1 209 323 40 20 chr12 42717609 42717708 -101564781 - MIR SINE MIR -72 190 90 1068 195 0 5 chr12 42718325 42718515 -101563974 + AluJo SINE Alu 11 199 -113 954 311 119 48 chr12 42718912 42719458 -101563031 - MLT1K LTR MaLR -2 586 2 635 167 0 0 chr12 42720381 42720495 -101561994 + L1M4 LINE L1 5681 5794 -380 415 141 0 0 chr12 42720507 42720578 -101561911 - L1PA16 LINE L1 -9 6157 6087 2394 141 5 8 chr12 42720610 42720986 -101561503 + THE1C LTR MaLR 1 375 0 10168 111 20 29 chr12 42720986 42722580 -101559909 + THE1C-int LTR MaLR 1 1580 0 2547 122 3 8 chr12 42722580 42722957 -101559532 + THE1C LTR MaLR 1 375 0 14029 139 32 7 chr12 42723522 42725881 -101556608 + Tigger1 DNA MER2_type 1 2418 0 21 0 0 0 chr12 42726678 42726699 -101555790 + AT_rich Low_complexity Low_complexity 1 21 0 205 342 26 0 chr12 42727058 42727134 -101555355 - L2 LINE L2 -556 2758 2681 319 313 73 50 chr12 42727996 42728175 -101554314 - L2 LINE L2 -217 3055 2873 355 243 54 0 chr12 42728558 42728632 -101553857 + MIR SINE MIR 185 262 0 25 31 0 0 chr12 42728632 42728664 -101553825 + AT_rich Low_complexity Low_complexity 1 32 0 291 298 0 39 chr12 42728740 42728844 -101553645 - L2 LINE L2 -4 3309 3210 749 342 199 29 chr12 42729887 42730957 -101551532 + L3 LINE CR1 275 1526 -51 243 157 0 0 chr12 42731835 42731886 -101550603 + T-rich Low_complexity Low_complexity 1 51 0 507 278 41 30 chr12 42732202 42732371 -101550118 + MIR SINE MIR 13 183 -79 21 71 0 0 chr12 42732889 42732931 -101549558 + AT_rich Low_complexity Low_complexity 1 42 0 344 303 48 48 chr12 42733398 42733563 -101548926 - HAL1 LINE L1 -25 2482 2318 988 238 92 61 chr12 42733741 42734069 -101548420 + MLT2B1 LTR ERVL 1 338 -182 301 268 10 31 chr12 42734055 42734152 -101548337 + MLT1C LTR MaLR 373 467 0 * 1506 130 19 31 chr12 42734155 42734416 -101548073 - L1M3 LINE L1 -466 5705 5448 206 123 70 18 chr12 42734606 42734720 -101547769 + (TA)n Simple_repeat Simple_repeat 2 121 0 394 311 98 37 chr12 42734736 42734984 -101547505 - L1M4 LINE L1 -2863 3283 3051 655 233 87 64 chr12 42734984 42735203 -101547286 - MER58A DNA MER1_type 0 224 1 394 311 98 37 chr12 42735203 42736029 -101546460 - L1M4 LINE L1 -3095 3051 2144 525 303 104 37 chr12 42736319 42737056 -101545433 - HAL1b LINE L1 -490 858 72 745 187 90 0 chr12 42738239 42738373 -101544116 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr12 42738377 42738399 -101544090 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr12 42738971 42738993 -101543496 + AT_rich Low_complexity Low_complexity 1 22 0 2169 123 0 0 chr12 42739039 42739331 -101543158 + AluSx SINE Alu 1 292 -20 25 0 0 0 chr12 42739331 42739356 -101543133 + AT_rich Low_complexity Low_complexity 1 25 0 952 303 117 30 chr12 42739369 42740084 -101542405 - L2 LINE L2 -91 3222 2432 599 299 108 21 chr12 42740336 42740661 -101541828 - L2 LINE L2 -233 3080 2721 228 302 19 107 chr12 42742001 42742160 -101540329 - L2 LINE L2 -221 3051 2907 447 354 118 23 chr12 42742216 42742606 -101539883 - L2 LINE L2 -11 3302 2876 25 31 0 0 chr12 42742682 42742714 -101539775 + AT_rich Low_complexity Low_complexity 1 32 0 288 320 49 8 chr12 42742881 42743003 -101539486 - L2 LINE L2 -949 2365 2239 238 214 107 0 chr12 42743628 42743684 -101538805 - LTR16A LTR ERVL -8 442 381 240 287 11 0 chr12 42743689 42743783 -101538706 - L1ME LINE L1 -5270 800 706 381 165 10 68 chr12 42743940 42744043 -101538446 - L1ME LINE L1 -5510 560 464 1101 215 59 104 chr12 42744124 42744565 -101537924 - MLT1D LTR MaLR -44 461 41 1133 283 35 42 chr12 42744603 42745056 -101537433 - L1ME LINE L1 -5611 459 10 1122 249 63 34 chr12 42745065 42745768 -101536721 + L1M4 LINE L1 2683 3405 -2741 2726 140 7 14 chr12 42745863 42746292 -101536197 - MSTB LTR MaLR 0 426 1 1704 165 117 3 chr12 42746429 42746763 -101535726 + MSTD LTR MaLR 25 396 0 189 0 0 0 chr12 42747379 42747400 -101535089 + (TG)n Simple_repeat Simple_repeat 1 21 0 310 323 31 0 chr12 42748352 42748448 -101534041 + MIR SINE MIR 17 115 -93 2062 98 3 20 chr12 42748482 42748777 -101533712 - AluSp SINE Alu -2 311 22 186 310 69 0 chr12 42749651 42749709 -101532780 + L2 LINE L2 3205 3266 -6 756 0 22 0 chr12 42749924 42750014 -101532475 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 2085 61 3 90 chr12 42750014 42750324 -101532165 - AluY SINE Alu -1 372 1 251 273 15 30 chr12 42753920 42753986 -101528503 - MIR SINE MIR -56 152 88 227 320 30 0 chr12 42754155 42754255 -101528234 - L3 LINE CR1 -756 821 719 242 351 82 16 chr12 42754257 42754457 -101528032 + MIR SINE MIR 38 248 -14 337 280 15 61 chr12 42755550 42755682 -101526807 + MIR SINE MIR 135 260 -2 227 320 13 13 chr12 42756113 42756188 -101526301 + MIR SINE MIR 21 95 -113 498 297 169 16 chr12 42756386 42756941 -101525548 - L1ME4a LINE L1 -135 5986 5347 200 230 172 23 chr12 42757673 42757760 -101524729 + MIR SINE MIR 8 107 -155 2469 68 10 3 chr12 42757760 42758067 -101524422 - AluY SINE Alu -2 309 1 188 384 22 36 chr12 42758138 42758362 -101524127 + L2 LINE L2 2627 2847 -467 385 381 93 16 chr12 42758539 42758786 -101523703 + L2 LINE L2 3007 3272 0 408 266 56 42 chr12 42759210 42759353 -101523136 - MIR SINE MIR -57 205 61 195 42 0 0 chr12 42759637 42759661 -101522828 + (CA)n Simple_repeat Simple_repeat 2 25 0 23 54 0 0 chr12 42759739 42759776 -101522713 + AT_rich Low_complexity Low_complexity 1 37 0 2366 104 0 0 chr12 42759777 42760084 -101522405 + AluSg SINE Alu 1 307 -3 394 290 164 61 chr12 42760353 42760584 -101521905 - MIR SINE MIR -2 260 6 27 0 0 0 chr12 42761029 42761056 -101521433 + AT_rich Low_complexity Low_complexity 1 27 0 988 276 80 38 chr12 42761373 42761634 -101520855 - L1ME3A LINE L1 -8 6162 5873 814 158 0 0 chr12 42761634 42761767 -101520722 - FLAM_C SINE Alu 0 133 1 988 276 80 38 chr12 42761767 42761957 -101520532 - L1ME3A LINE L1 -297 5873 5692 2000 125 34 3 chr12 42761972 42762267 -101520222 - AluSq SINE Alu -9 304 1 431 255 121 64 chr12 42762267 42762687 -101519802 - L1ME4a LINE L1 -196 5925 5482 194 276 0 103 chr12 42762952 42763039 -101519450 + MIR SINE MIR 51 128 -134 219 379 29 19 chr12 42763359 42763462 -101519027 - L2 LINE L2 -32 3240 3137 1153 8 0 0 chr12 42765065 42765196 -101517293 - L1PA2 LINE L1 -3 6152 6022 2607 134 26 5 chr12 42765199 42765618 -101516871 - MSTA LTR MaLR 0 428 1 195 69 0 0 chr12 42765628 42765657 -101516832 + (TA)n Simple_repeat Simple_repeat 1 29 0 1257 20 0 0 chr12 42765657 42765803 -101516686 - L1PA5 LINE L1 -9 6145 6000 211 330 47 105 chr12 42765851 42766109 -101516380 + L2 LINE L2 2986 3228 -44 479 303 21 7 chr12 42766333 42766478 -101516011 - MER5A DNA MER1_type -5 184 38 387 0 0 0 chr12 42766578 42766621 -101515868 + (CA)n Simple_repeat Simple_repeat 1 43 0 2434 48 0 14 chr12 42766698 42767063 -101515426 - AluY SINE Alu 0 381 21 12946 132 48 43 chr12 42767749 42770151 -101512338 - Tigger1 DNA MER2_type -3 2415 1 215 340 65 20 chr12 42770936 42771089 -101511400 + L2 LINE L2 1547 1706 -1608 216 328 63 28 chr12 42771153 42771244 -101511245 + L2 LINE L2 1680 1766 -1548 1388 202 10 42 chr12 42771244 42771551 -101510938 - AluJo SINE Alu -15 297 1 216 328 63 28 chr12 42771551 42771776 -101510713 + L2 LINE L2 1766 2007 -1307 234 0 0 0 chr12 42771942 42771968 -101510521 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1011 186 41 23 chr12 42772321 42772542 -101509947 + MSTB1 LTR MaLR 1 225 -207 751 165 0 0 chr12 42772540 42772661 -101509828 - MSTB1 LTR MaLR -14 418 298 * 28 48 0 0 chr12 42772961 42773003 -101509486 + AT_rich Low_complexity Low_complexity 1 42 0 649 273 22 6 chr12 42774632 42774815 -101507674 - MER5A DNA MER1_type -3 186 1 429 260 16 47 chr12 42775350 42775477 -101507012 - MER5B DNA MER1_type -1 177 55 190 316 41 31 chr12 42775524 42775622 -101506867 - MIR SINE MIR -4 258 160 208 125 0 0 chr12 42775743 42775775 -101506714 + (TC)n Simple_repeat Simple_repeat 1 32 0 398 222 42 12 chr12 42775778 42775945 -101506544 + CT-rich Low_complexity Low_complexity 3 174 0 282 338 119 7 chr12 42776548 42776699 -101505790 - MIR SINE MIR -44 218 51 2041 94 3 45 chr12 42777697 42778005 -101504484 - AluSc SINE Alu 0 298 3 369 234 171 0 chr12 42778194 42778305 -101504184 - MIR SINE MIR -77 185 56 2174 89 3 51 chr12 42779364 42779679 -101502810 - AluSg SINE Alu -10 300 1 374 283 7 40 chr12 42780029 42780181 -101502308 + GA-rich Low_complexity Low_complexity 1 147 0 3052 28 0 6 chr12 42780186 42780549 -101501940 - L1PA3 LINE L1 -145 6010 5650 676 236 93 37 chr12 42780716 42780962 -101501527 + MER46C DNA MER2_type 72 331 -7 247 243 14 27 chr12 42781084 42781158 -101501331 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 434 262 87 7 chr12 42781486 42781635 -101500854 + MIR SINE MIR 73 233 -29 2158 97 7 13 chr12 42831848 42832156 -101450333 - AluSq SINE Alu -7 306 1 679 253 0 7 chr12 42832619 42832769 -101449720 + MER69 DNA AcHobo 1 149 -1077 358 214 29 29 chr12 42832785 42832888 -101449601 + MER69 DNA AcHobo 2424 2526 0 25 51 0 0 chr12 42832960 42832999 -101449490 + AT_rich Low_complexity Low_complexity 1 39 0 210 191 0 0 chr12 42833454 42833496 -101448993 + C-rich Low_complexity Low_complexity 4 45 0 1377 231 95 5 chr12 42833870 42834269 -101448220 + MER63B DNA MER1_type 2 436 0 23 0 0 0 chr12 42834744 42834767 -101447722 + AT_rich Low_complexity Low_complexity 1 23 0 27 62 0 0 chr12 42834914 42834962 -101447527 + AT_rich Low_complexity Low_complexity 1 48 0 25 31 0 0 chr12 42834993 42835025 -101447464 + AT_rich Low_complexity Low_complexity 1 32 0 527 284 135 44 chr12 42835778 42836007 -101446482 + MIR SINE MIR 2 251 -11 1561 75 0 80 chr12 42836120 42836254 -101446235 - THE1A LTR MaLR 0 355 246 2365 57 0 0 chr12 42836254 42836557 -101445932 - AluY SINE Alu 0 303 1 1561 75 0 80 chr12 42836557 42836660 -101445829 - THE1A LTR MaLR -109 246 136 456 301 51 6 chr12 42836670 42836846 -101445643 + L2 LINE L2 1784 1967 -1347 253 281 50 66 chr12 42836847 42836968 -101445521 - MLT1L LTR MaLR -244 371 253 22 35 0 0 chr12 42839236 42839265 -101443224 + AT_rich Low_complexity Low_complexity 1 29 0 319 298 8 23 chr12 42840844 42840975 -101441514 - L1M4 LINE L1 -951 5195 5067 22 0 0 0 chr12 42842196 42842218 -101440271 + AT_rich Low_complexity Low_complexity 1 22 0 534 291 51 10 chr12 42842464 42842660 -101439829 - MIR SINE MIR -6 256 53 252 357 44 32 chr12 42843381 42843630 -101438859 - L2 LINE L2 -182 3090 2839 21 0 0 0 chr12 42845000 42845021 -101437468 + AT_rich Low_complexity Low_complexity 1 21 0 404 346 74 0 chr12 42845096 42845258 -101437231 - MIR3 SINE MIR -3 205 32 274 317 50 37 chr12 42846129 42846290 -101436199 + L3 LINE CR1 1364 1526 -51 2329 97 0 0 chr12 42847868 42848167 -101434322 + AluSc SINE Alu 1 299 -10 664 215 20 27 chr12 42848189 42848338 -101434151 + MER106B DNA MER1_type 1 148 -911 39 22 0 0 chr12 42848347 42848393 -101434096 + AT_rich Low_complexity Low_complexity 1 46 0 273 381 111 14 chr12 42848874 42849163 -101433326 - L2 LINE L2 -989 2325 2009 236 318 0 0 chr12 42850715 42850803 -101431686 - L1MC4 LINE L1 -1340 6702 6615 540 111 0 0 chr12 42850978 42851059 -101431430 + (TA)n Simple_repeat Simple_repeat 1 81 0 1576 278 118 73 chr12 42851163 42851349 -101431140 - L2 LINE L2 0 3313 3137 468 0 0 0 chr12 42851349 42851401 -101431088 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1576 278 118 73 chr12 42851401 42852290 -101430199 - L2 LINE L2 -176 3137 2178 326 292 40 0 chr12 42852634 42852758 -101429731 + MIR SINE MIR 51 143 -65 269 360 108 10 chr12 42854589 42854792 -101427697 + MIR SINE MIR 2 224 -38 193 370 62 39 chr12 42856047 42856352 -101426137 + L2 LINE L2 1358 1669 -1645 235 280 168 21 chr12 42856384 42856527 -101425962 + L2 LINE L2 1900 2063 -1251 389 287 132 12 chr12 42856888 42857055 -101425434 - MER5A DNA MER1_type -2 187 1 308 329 32 60 chr12 42857068 42857320 -101425169 + L2 LINE L2 2511 2755 -559 2234 148 19 6 chr12 42857320 42857679 -101424810 + THE1B LTR MaLR 1 364 0 425 255 0 51 chr12 42858156 42858313 -101424176 + CT-rich Low_complexity Low_complexity 4 152 0 1031 184 22 0 chr12 42859410 42859595 -101422894 - MER5A DNA MER1_type 0 189 1 1080 283 137 4 chr12 42859891 42860350 -101422139 + L2 LINE L2 1776 2295 -1019 328 248 53 35 chr12 42863065 42863178 -101419311 + MER5A DNA MER1_type 12 126 -63 180 322 0 0 chr12 42863153 42863212 -101419277 - MER5B DNA MER1_type -117 61 3 * 373 311 23 30 chr12 42863653 42863785 -101418704 + MIR SINE MIR 20 150 -112 1537 186 10 10 chr12 42863960 42864250 -101418239 - AluJb SINE Alu -20 292 3 198 91 61 0 chr12 42864922 42864955 -101417534 - MIR SINE MIR -154 108 74 277 308 111 65 chr12 42865395 42865674 -101416815 - L2 LINE L2 -358 2956 2665 23 33 0 0 chr12 42867085 42867115 -101415374 + AT_rich Low_complexity Low_complexity 1 30 0 977 313 35 18 chr12 42867394 42867848 -101414641 - LTR16B LTR ERVL 0 464 3 282 328 120 46 chr12 42868160 42868401 -101414088 + L3b LINE CR1 1228 1486 -97 204 309 0 0 chr12 42868524 42868579 -101413910 - L2 LINE L2 -673 2641 2587 21 36 0 0 chr12 42869551 42869579 -101412910 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 42871267 42871288 -101411201 + AT_rich Low_complexity Low_complexity 1 21 0 216 270 30 60 chr12 42871603 42871703 -101410786 - L2 LINE L2 0 3272 3176 1995 133 27 27 chr12 42872881 42873218 -101409271 - MER1B DNA MER1_type 0 337 1 305 292 89 3 chr12 42874150 42874269 -101408220 + MIR SINE MIR 25 164 -55 3739 151 10 5 chr12 42876709 42877325 -101405164 - LTR31 LTR ERV1 0 619 1 213 192 55 110 chr12 42877374 42877447 -101405042 - MIR SINE MIR -88 174 106 257 337 11 0 chr12 42878644 42878736 -101403753 - L2 LINE L2 0 3272 3180 306 365 0 61 chr12 42879173 42879288 -101403201 - L2 LINE L2 -31 3241 3134 190 358 63 39 chr12 42879794 42880001 -101402488 - L2 LINE L2 -189 3083 2872 387 363 23 6 chr12 42880083 42880254 -101402235 - L2 LINE L2 -556 2758 2585 1476 261 87 14 chr12 42880257 42880924 -101401565 - Charlie2 DNA MER1_type -1 2861 2146 358 171 360 9 chr12 42880931 42881042 -101401447 - Charlie2 DNA MER1_type -858 2004 1855 641 310 131 0 chr12 42881055 42881345 -101401144 - Charlie2 DNA MER1_type -2453 329 2 267 323 164 15 chr12 42881468 42881663 -101400826 - L2 LINE L2 -1959 1355 1132 407 254 92 7 chr12 42882074 42882216 -101400273 + Charlie2 DNA MER1_type 2709 2862 0 1561 194 104 72 chr12 42882996 42883466 -101399023 - MLT1E1 LTR MaLR -2 652 168 1619 60 82 9 chr12 42883471 42883703 -101398786 + L1P4 LINE L1 5374 5622 -546 3741 128 30 30 chr12 42883803 42884514 -101397975 + L1PA10 LINE L1 5455 6165 -3 316 233 8 124 chr12 42884522 42884651 -101397838 + L1MEd LINE L1 1048 1161 -4958 921 112 31 87 chr12 42884662 42884858 -101397631 + L1MC2 LINE L1 6136 6320 -24 517 176 115 54 chr12 42884948 42885096 -101397393 - MLT1E1 LTR MaLR -497 157 1 21 36 0 0 chr12 42885295 42885323 -101397166 + AT_rich Low_complexity Low_complexity 1 28 0 2602 224 97 22 chr12 42885727 42886407 -101396082 - MER21B LTR ERV1 -123 740 10 788 220 62 21 chr12 42887090 42887331 -101395158 - L1MEc LINE L1 -4320 2802 2552 904 172 71 92 chr12 42887331 42887569 -101394920 + AluJo SINE Alu 50 282 -30 252 0 0 0 chr12 42887574 42887602 -101394887 + (CA)n Simple_repeat Simple_repeat 2 29 0 308 259 37 0 chr12 42887605 42887686 -101394803 - L1MEc LINE L1 -4573 2549 2466 363 193 0 0 chr12 42887689 42887746 -101394743 - Charlie3 DNA MER1_type -2634 76 20 653 311 49 0 chr12 42887752 42888016 -101394473 - L1MEc LINE L1 -6128 295 19 24 0 0 0 chr12 42888299 42888323 -101394166 + AT_rich Low_complexity Low_complexity 1 24 0 1931 176 37 0 chr12 42888904 42889228 -101393261 + MER1B DNA MER1_type 2 337 0 322 171 13 13 chr12 42889276 42889352 -101393137 + CT-rich Low_complexity Low_complexity 3 78 0 2198 86 20 10 chr12 42889380 42889683 -101392806 - AluSq SINE Alu -5 308 3 6563 204 34 15 chr12 42889703 42892109 -101390380 - L1MB7 LINE L1 -9 6986 4531 487 240 27 66 chr12 42892105 42892288 -101390201 - L1MB7 LINE L1 -5438 1421 1246 * 629 197 0 8 chr12 42892297 42892419 -101390070 - MLT1J2 LTR MaLR -269 181 61 1278 154 85 0 chr12 42892742 42893001 -101389488 + L1MA8 LINE L1 6007 6287 -4 261 0 0 0 chr12 42893246 42893275 -101389214 + (TTA)n Simple_repeat Simple_repeat 2 30 0 23 68 0 0 chr12 42894410 42894454 -101388035 + AT_rich Low_complexity Low_complexity 1 44 0 1703 160 14 10 chr12 42894640 42894933 -101387556 - AluJo SINE Alu -16 296 3 2241 129 36 14 chr12 42895247 42895603 -101386886 + THE1B LTR MaLR 1 364 0 224 216 0 0 chr12 42896103 42896154 -101386335 + (CA)n Simple_repeat Simple_repeat 2 52 0 252 0 0 0 chr12 42896552 42896580 -101385909 + (A)n Simple_repeat Simple_repeat 1 28 0 443 304 69 17 chr12 42896707 42896986 -101385503 - L2 LINE L2 -565 2749 2402 444 19 0 0 chr12 42897574 42897627 -101384862 + (TG)n Simple_repeat Simple_repeat 2 54 0 496 310 26 18 chr12 42897914 42897926 -101384563 - MIR SINE MIR -31 231 221 2131 110 37 0 chr12 42897926 42898225 -101384264 - AluSg SINE Alu 0 310 1 496 310 26 18 chr12 42898225 42898438 -101384051 - MIR SINE MIR -41 221 4 222 240 0 20 chr12 42899525 42899575 -101382914 - L2 LINE L2 -18 3295 3247 * 756 263 42 24 chr12 42899568 42899781 -101382708 + MIR SINE MIR 46 262 0 286 263 0 20 chr12 42900170 42900269 -101382220 - L1MC/D LINE L1 -2012 5796 5700 385 268 202 9 chr12 42900288 42900501 -101381988 - MIR SINE MIR 0 262 9 449 285 23 31 chr12 42900537 42900667 -101381822 + MER5B DNA MER1_type 4 132 -46 1494 162 74 0 chr12 42900672 42900968 -101381521 - L1MD1 LINE L1 -1 6241 5924 239 127 18 91 chr12 42900985 42901040 -101381449 + L1MD1 LINE L1 5882 5932 -427 1443 171 14 17 chr12 42901094 42901138 -101381351 - L1MD1 LINE L1 -336 5906 5863 422 314 25 36 chr12 42901138 42901418 -101381071 - L1PB1 LINE L1 -288 5863 5587 2332 91 7 0 chr12 42903471 42903778 -101378711 - AluSp SINE Alu -4 309 1 24 32 0 0 chr12 42904466 42904497 -101377992 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr12 42904656 42904693 -101377796 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr12 42905591 42905621 -101376868 + AT_rich Low_complexity Low_complexity 1 30 0 522 319 135 30 chr12 42906104 42906474 -101376015 - MLT1K LTR MaLR 0 588 180 392 299 0 0 chr12 42906939 42907046 -101375443 - MER119 DNA MER1_type 0 583 477 326 293 102 48 chr12 42908540 42908687 -101373802 + MER5B DNA MER1_type 18 172 -6 301 237 137 22 chr12 42909416 42909555 -101372934 - L1ME4a LINE L1 -13 6108 5954 342 290 45 40 chr12 42909573 42909749 -101372740 - L1MEc LINE L1 -4076 2320 2144 427 361 14 9 chr12 42909905 42910121 -101372368 - L1MC/D LINE L1 -444 5677 5461 301 323 43 30 chr12 42910387 42910551 -101371938 - L1MC/D LINE L1 -1077 5069 4904 577 256 108 44 chr12 42910617 42910820 -101371669 + MIR SINE MIR 46 261 -1 776 245 94 25 chr12 42910916 42911161 -101371328 + MIR SINE MIR 1 262 0 380 346 101 29 chr12 42911166 42911710 -101370779 - L1MC/D LINE L1 -1454 4692 4110 7253 32 0 3 chr12 42911923 42912787 -101369702 - L1PA4 LINE L1 -869 5277 4415 7283 33 0 0 chr12 42912787 42913656 -101368833 + L1PA4 LINE L1 5286 6154 -1 7253 32 0 3 chr12 42913656 42913670 -101368819 - L1P LINE L1 -1731 4415 4402 206 339 0 0 chr12 42914987 42915046 -101367443 - L2 LINE L2 -8 3264 3206 317 295 193 6 chr12 42915292 42915458 -101367031 + MIR SINE MIR 63 259 -3 5548 185 31 42 chr12 42915662 42917488 -101365001 - L1MC1 LINE L1 0 6333 4531 23 0 0 0 chr12 42917950 42917973 -101364516 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr12 42918475 42918512 -101363977 + AT_rich Low_complexity Low_complexity 1 37 0 654 283 54 39 chr12 42919252 42919531 -101362958 + L2 LINE L2 2202 2484 -830 1127 190 50 0 chr12 42919808 42920029 -101362460 + L1MC2 LINE L1 6088 6319 -25 1831 162 117 43 chr12 42920800 42921195 -101361294 - MSTC LTR MaLR -4 424 1 2513 32 0 29 chr12 42921235 42921545 -101360944 - AluY SINE Alu -10 301 1 345 208 94 10 chr12 42922395 42922491 -101359998 + MIR SINE MIR 124 227 -35 314 273 15 0 chr12 42922553 42922619 -101359870 + L2 LINE L2 3245 3311 -2 185 222 0 0 chr12 42922905 42922941 -101359548 + L2 LINE L2 3231 3266 -6 186 375 54 27 chr12 42923593 42923705 -101358784 - L2 LINE L2 -8 3264 3150 27 0 0 0 chr12 42923801 42923828 -101358661 + AT_rich Low_complexity Low_complexity 1 27 0 258 359 157 6 chr12 42925166 42925325 -101357164 - MER5A DNA MER1_type -6 183 1 215 314 71 0 chr12 42926612 42926682 -101355807 - MIR SINE MIR -138 124 50 394 354 66 22 chr12 42926816 42926997 -101355492 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr12 42927963 42927984 -101354505 + AT_rich Low_complexity Low_complexity 1 21 0 211 258 45 0 chr12 42928402 42928468 -101354021 + GA-rich Low_complexity Low_complexity 5 73 0 413 155 26 35 chr12 42929477 42929488 -101353001 + CT-rich Low_complexity Low_complexity 2 12 -104 2389 75 3 0 chr12 42929488 42929796 -101352693 - AluY SINE Alu -2 309 1 413 155 26 35 chr12 42929796 42929900 -101352589 + CT-rich Low_complexity Low_complexity 12 116 0 2065 137 13 3 chr12 42929900 42930207 -101352282 - AluSx SINE Alu 0 312 3 334 271 161 0 chr12 42930282 42930400 -101352089 - L2 LINE L2 -2 3311 3175 389 336 60 7 chr12 42930422 42930571 -101351918 - MIR SINE MIR -51 211 55 237 200 0 0 chr12 42931033 42931068 -101351421 - Alu SINE Alu -25 277 243 207 88 0 0 chr12 42931095 42931129 -101351360 + (TAAAAA)n Simple_repeat Simple_repeat 5 38 0 2403 48 14 0 chr12 42931473 42931764 -101350725 + AluY SINE Alu 1 295 -16 28 0 0 0 chr12 42931827 42931855 -101350634 + AT_rich Low_complexity Low_complexity 1 28 0 423 0 0 0 chr12 42932869 42932916 -101349573 + (CA)n Simple_repeat Simple_repeat 2 48 0 253 310 37 53 chr12 42933035 42933222 -101349267 + MIR SINE MIR 47 230 -32 270 81 0 0 chr12 42933331 42933368 -101349121 + (T)n Simple_repeat Simple_repeat 1 37 0 634 292 23 50 chr12 42933489 42933749 -101348740 - MIR SINE MIR 0 262 10 217 164 36 18 chr12 42934281 42934336 -101348153 + T-rich Low_complexity Low_complexity 3 58 0 1729 18 23 9 chr12 42934366 42934584 -101347905 - L1PA2 LINE L1 -2 6153 5933 2276 93 13 3 chr12 42934652 42934962 -101347527 - AluSq SINE Alu 0 313 1 523 224 109 14 chr12 42935141 42935184 -101347305 + MER20 DNA MER1_type 55 93 -126 414 0 0 0 chr12 42935184 42935230 -101347259 + (TG)n Simple_repeat Simple_repeat 2 47 0 523 224 109 14 chr12 42935230 42935333 -101347156 + MER20 DNA MER1_type 93 215 -4 27 0 0 0 chr12 42936044 42936071 -101346418 + AT_rich Low_complexity Low_complexity 1 27 0 1308 115 0 16 chr12 42936637 42936828 -101345661 + AluSg/x SINE Alu 125 312 0 298 288 104 24 chr12 42937239 42937364 -101345125 + MIR SINE MIR 23 157 -105 191 343 0 0 chr12 42937461 42937528 -101344961 + MIR SINE MIR 183 249 -13 263 288 0 0 chr12 42937605 42937678 -101344811 + (TAG)n Simple_repeat Simple_repeat 1 73 0 425 301 38 0 chr12 42937681 42937814 -101344675 + MIR SINE MIR 123 260 -2 30 0 0 0 chr12 42938792 42938822 -101343667 + AT_rich Low_complexity Low_complexity 1 30 0 33 25 0 0 chr12 42939426 42939466 -101343023 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr12 42939573 42939604 -101342885 + AT_rich Low_complexity Low_complexity 1 31 0 1181 274 74 21 chr12 42939720 42940150 -101342339 - MER77 LTR ERV1 -7 598 146 272 428 125 19 chr12 42940700 42941020 -101341469 - L2 LINE L2 0 3272 2919 205 299 30 0 chr12 42941265 42941332 -101341157 - L2 LINE L2 -5 3308 3240 213 363 115 34 chr12 42941650 42942127 -101340362 - L2 LINE L2 -356 2958 2443 201 83 28 28 chr12 42942352 42942388 -101340101 + (GAGAA)n Simple_repeat Simple_repeat 4 39 0 306 0 0 0 chr12 42942682 42942716 -101339773 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 289 255 21 113 chr12 42943235 42943376 -101339113 + MIR SINE MIR 64 191 -71 645 139 0 0 chr12 42943378 42943486 -101339003 + (TG)n Simple_repeat Simple_repeat 2 109 0 182 320 0 0 chr12 42943498 42943548 -101338941 + MIR SINE MIR 213 262 0 257 374 44 0 chr12 42943608 42943699 -101338790 - L2 LINE L2 -36 3277 3183 231 275 66 11 chr12 42943968 42944059 -101338430 - MIR3 SINE MIR -1 207 112 183 296 56 28 chr12 42945130 42945201 -101337288 + L2 LINE L2 2987 3059 -213 21 0 0 0 chr12 42946513 42946534 -101335955 + AT_rich Low_complexity Low_complexity 1 21 0 248 255 0 0 chr12 42946620 42946671 -101335818 + Charlie4 DNA MER1_type 1 51 -1910 21 36 0 0 chr12 42947160 42947188 -101335301 + AT_rich Low_complexity Low_complexity 1 28 0 189 107 0 0 chr12 42947337 42947365 -101335124 + (TG)n Simple_repeat Simple_repeat 1 28 0 769 144 93 7 chr12 42948229 42948368 -101334121 + AluSp SINE Alu 1 151 -162 46 45 0 0 chr12 42948627 42948694 -101333795 + AT_rich Low_complexity Low_complexity 1 67 0 318 26 0 0 chr12 42949611 42949650 -101332839 + (TG)n Simple_repeat Simple_repeat 1 39 0 395 38 19 0 chr12 42951083 42951136 -101331353 + (CA)n Simple_repeat Simple_repeat 1 54 0 746 120 0 0 chr12 42952148 42952256 -101330233 + AluSg/x SINE Alu 176 283 -29 210 37 0 0 chr12 42952261 42952288 -101330201 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2107 121 10 0 chr12 42952289 42952595 -101329894 + AluSg SINE Alu 1 309 -1 273 216 14 68 chr12 42952937 42953085 -101329404 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 492 259 23 15 chr12 42953131 42953262 -101329227 - MIR SINE MIR -98 164 33 226 331 58 29 chr12 42955822 42955961 -101326528 + MIR SINE MIR 14 156 -106 22 0 0 0 chr12 42956760 42956782 -101325707 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr12 42957646 42957681 -101324808 + AT_rich Low_complexity Low_complexity 1 35 0 965 56 0 16 chr12 42957959 42958084 -101324405 - L1PA3 LINE L1 -3 6152 6030 529 192 117 0 chr12 42959420 42959540 -101322949 + AluJb SINE Alu 1 134 -178 21 0 0 0 chr12 42959540 42959561 -101322928 + AT_rich Low_complexity Low_complexity 1 21 0 686 277 23 6 chr12 42959717 42959894 -101322595 + MIR SINE MIR 7 186 -76 224 287 89 69 chr12 42960163 42960264 -101322225 + MIR SINE MIR 41 143 -65 405 0 0 0 chr12 42960267 42960312 -101322177 + (TA)n Simple_repeat Simple_repeat 1 45 0 195 129 0 0 chr12 42961624 42961655 -101320834 + (A)n Simple_repeat Simple_repeat 1 31 0 3529 123 55 17 chr12 42962028 42962615 -101319874 - MER4B LTR ERV1 0 610 2 382 311 58 58 chr12 42962766 42962853 -101319636 - MIR SINE MIR -2 260 174 513 0 0 0 chr12 42962853 42962910 -101319579 + (TTTTG)n Simple_repeat Simple_repeat 1 57 0 1843 141 7 4 chr12 42962914 42963190 -101319299 - AluSx SINE Alu -35 277 1 382 311 58 58 chr12 42963190 42963338 -101319151 - MIR SINE MIR -90 172 20 195 265 0 0 chr12 42963624 42963673 -101318816 - L2 LINE L2 0 3313 3265 33 0 0 0 chr12 42964607 42964640 -101317849 + AT_rich Low_complexity Low_complexity 1 33 0 1662 140 7 58 chr12 42965245 42965553 -101316936 + AluJb SINE Alu 7 298 -14 22 35 0 0 chr12 42967014 42967043 -101315446 + AT_rich Low_complexity Low_complexity 1 29 0 416 246 100 18 chr12 42967613 42967723 -101314766 + L2 LINE L2 3187 3305 -8 * 688 233 86 45 chr12 42967697 42967942 -101314547 - L2 LINE L2 -2 3311 3057 1915 53 4 0 chr12 42967948 42968191 -101314298 + L1PA5 LINE L1 5910 6153 -1 756 252 46 8 chr12 42968208 42968548 -101313941 - L1MEc LINE L1 -3798 2417 2107 351 96 0 0 chr12 42968557 42968609 -101313880 + (TG)n Simple_repeat Simple_repeat 2 53 0 302 321 65 33 chr12 42968672 42968856 -101313633 - L1MEc LINE L1 -4321 2075 1886 306 179 0 24 chr12 42968899 42969022 -101313467 + (TTATA)n Simple_repeat Simple_repeat 5 124 0 34 42 0 0 chr12 42969062 42969110 -101313379 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr12 42969195 42969219 -101313270 + AT_rich Low_complexity Low_complexity 1 24 0 2219 191 47 0 chr12 42969394 42969803 -101312686 - MSTB1 LTR MaLR 0 432 5 209 222 16 0 chr12 42969913 42969976 -101312513 + (TA)n Simple_repeat Simple_repeat 1 64 0 500 263 56 56 chr12 42970040 42970306 -101312183 - L1MEc LINE L1 -4576 1820 1555 846 285 107 53 chr12 42970372 42970937 -101311552 - L1MCc LINE L1 -4577 2545 2012 228 35 0 0 chr12 42970937 42970966 -101311523 + (TG)n Simple_repeat Simple_repeat 1 29 0 846 285 107 53 chr12 42970966 42971666 -101310823 - L1MCc LINE L1 -5110 2012 974 618 316 7 29 chr12 42971829 42972101 -101310388 - L1MCc LINE L1 -5959 464 199 318 205 98 27 chr12 42972107 42972219 -101310270 - L1MCc LINE L1 -6285 138 19 493 323 59 5 chr12 42972765 42972985 -101309504 - L1ME LINE L1 -414 5707 5476 859 210 113 107 chr12 42976113 42976571 -101305918 - MLT1C LTR MaLR -1 466 6 2152 85 4 0 chr12 42976636 42976944 -101305545 + AluY SINE Alu 1 309 0 255 277 84 24 chr12 42977901 42977984 -101304505 + MER5A DNA MER1_type 10 97 -92 270 103 0 0 chr12 42978987 42979026 -101303463 - tRNA-Gln-CAG tRNA tRNA -36 39 1 21 36 0 0 chr12 42979114 42979142 -101303347 + AT_rich Low_complexity Low_complexity 1 28 0 328 335 97 7 chr12 42980010 42980165 -101302324 + MIR SINE MIR 38 206 -56 317 281 329 12 chr12 42980949 42981113 -101301376 - MIR SINE MIR -34 228 13 379 268 103 62 chr12 42981138 42981230 -101301259 + MIR SINE MIR 29 116 -146 1559 152 28 10 chr12 42981230 42981520 -101300969 - AluJb SINE Alu -17 295 1 379 268 103 62 chr12 42981520 42981651 -101300838 + MIR SINE MIR 116 261 -1 248 346 7 44 chr12 42982682 42982818 -101299671 + MIR SINE MIR 20 150 -112 231 288 25 25 chr12 42983012 42983092 -101299397 + L2 LINE L2 3225 3304 -9 24 0 0 0 chr12 42983701 42983725 -101298764 + AT_rich Low_complexity Low_complexity 1 24 0 2297 88 3 13 chr12 42984786 42985093 -101297396 - AluY SINE Alu -7 304 1 20272 174 24 15 chr12 42985716 42987639 -101294850 - L1PA13 LINE L1 -1 6813 4909 2276 101 0 0 chr12 42987639 42987945 -101294544 - AluY SINE Alu -5 306 1 20272 174 24 15 chr12 42987945 42991395 -101291094 - L1PA13 LINE L1 -1905 4909 1396 686 272 16 26 chr12 42991398 42991589 -101290900 - L1PA13 LINE L1 -5529 1258 1070 2804 6 0 3 chr12 42992136 42992448 -101290041 - AluYa5 SINE Alu 0 311 1 3928 135 15 7 chr12 42992498 42993104 -101289385 - LTR9 LTR ERV1 0 612 2 1466 134 0 5 chr12 42993105 42993321 -101289168 - HUERS-P3 LTR ERV1 -1 8918 8704 575 198 8 0 chr12 42993649 42993775 -101288714 - LTR9-int LTR ERV1 -2443 2572 2446 894 162 22 11 chr12 42993781 42993960 -101288529 - LTR9-int LTR ERV1 -3693 4123 3943 * 5080 135 4 4 chr12 42993933 42994665 -101287824 - LTR9-int LTR ERV1 -3801 5118 4387 * 9935 143 19 15 chr12 42994651 42996276 -101286213 - LTR9-int LTR ERV1 -5219 3700 2069 584 78 0 0 chr12 42996299 42996376 -101286113 - LTR9-int LTR ERV1 -7012 1907 1831 9378 128 67 15 chr12 42996390 42997947 -101284542 - LTR9-int LTR ERV1 -7267 1652 15 4435 102 2 10 chr12 42997962 42998577 -101283912 - LTR9 LTR ERV1 0 612 3 185 397 34 20 chr12 43000429 43000575 -101281914 + MER5A DNA MER1_type 39 186 -3 695 293 104 40 chr12 43001203 43001579 -101280910 - L2 LINE L2 -24 3289 2890 405 102 430 2 chr12 43002361 43002489 -101280000 + AluSg/x SINE Alu 133 299 -1 21 0 0 0 chr12 43002500 43002521 -101279968 + AT_rich Low_complexity Low_complexity 1 21 0 2073 106 7 0 chr12 43002898 43003191 -101279298 + AluSp SINE Alu 1 295 -18 216 185 0 0 chr12 43003681 43003735 -101278754 + (TA)n Simple_repeat Simple_repeat 1 54 0 237 65 0 0 chr12 43003785 43003816 -101278673 + (TG)n Simple_repeat Simple_repeat 2 32 0 2314 94 3 0 chr12 43003963 43004260 -101278229 + AluSp SINE Alu 1 298 -15 22 0 0 0 chr12 43005016 43005038 -101277451 + AT_rich Low_complexity Low_complexity 1 22 0 253 288 0 0 chr12 43005147 43005220 -101277269 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 355 294 34 17 chr12 43006246 43006365 -101276124 - MIR SINE MIR -123 139 19 324 211 165 37 chr12 43006486 43006595 -101275894 + L2 LINE L2 3183 3305 -8 291 285 146 46 chr12 43007494 43007624 -101274865 + MIR SINE MIR 49 191 -71 279 177 0 0 chr12 43007669 43007731 -101274758 + (ATG)n Simple_repeat Simple_repeat 3 64 0 433 239 131 0 chr12 43007741 43007871 -101274618 - MIR SINE MIR -10 252 106 304 230 47 54 chr12 43008961 43009109 -101273380 - LTR16C LTR ERVL -58 433 287 32 0 0 0 chr12 43009963 43009995 -101272494 + AT_rich Low_complexity Low_complexity 1 32 0 378 309 79 0 chr12 43011128 43011254 -101271235 + MIR SINE MIR 12 147 -115 1752 317 84 54 chr12 43011285 43012735 -101269754 - L2 LINE L2 0 3313 1820 441 254 0 27 chr12 43012724 43012834 -101269655 + MIR SINE MIR 142 248 -14 * 2040 148 0 0 chr12 43013122 43013420 -101269069 - AluSx SINE Alu -14 298 1 463 225 0 8 chr12 43014589 43014709 -101267780 + L1MA9 LINE L1 6184 6302 -10 629 47 12 0 chr12 43015180 43015265 -101267224 + L1PA13 LINE L1 6070 6155 -8 256 289 41 25 chr12 43015519 43015640 -101266849 - L1ME4a LINE L1 -48 6073 5951 23 0 0 0 chr12 43015666 43015689 -101266800 + AT_rich Low_complexity Low_complexity 1 23 0 228 255 112 20 chr12 43015836 43015934 -101266555 - L1P5 LINE L1 -595 5559 5453 1471 246 47 2 chr12 43016283 43016689 -101265800 + MER63B DNA MER1_type 11 434 -2 210 273 0 0 chr12 43017125 43017180 -101265309 - L2 LINE L2 0 3313 3259 376 293 64 14 chr12 43017213 43017353 -101265136 + L2 LINE L2 2593 2739 -575 952 57 8 0 chr12 43017362 43017486 -101265003 + AluY SINE Alu 187 311 0 785 312 47 45 chr12 43017500 43018021 -101264468 + L2 LINE L2 2763 3309 -4 208 353 66 45 chr12 43018627 43018845 -101263644 - L2 LINE L2 -501 2813 2586 2275 76 0 38 chr12 43018845 43019159 -101263330 + AluY SINE Alu 1 302 -9 208 353 66 45 chr12 43019159 43019229 -101263260 - L2 LINE L2 -728 2586 2519 612 301 155 43 chr12 43020508 43021119 -101261370 - L2 LINE L2 0 3313 2641 507 272 40 12 chr12 43021785 43021958 -101260531 - L1ME LINE L1 -383 5738 5561 1403 178 103 25 chr12 43022363 43022683 -101259806 + MER7A DNA MER2_type 3 345 -1 351 0 0 0 chr12 43022752 43022791 -101259698 + (CA)n Simple_repeat Simple_repeat 2 40 0 1851 156 7 0 chr12 43022964 43023273 -101259216 + AluSx SINE Alu 1 311 0 22 56 0 0 chr12 43023274 43023310 -101259179 + AT_rich Low_complexity Low_complexity 1 36 0 1429 127 165 38 chr12 43023379 43023725 -101258764 - MLT1B LTR MaLR 0 390 1 191 328 16 0 chr12 43023725 43023786 -101258703 - L2 LINE L2 -1407 1907 1846 1009 274 106 77 chr12 43023798 43024687 -101257802 - L2 LINE L2 -101 3212 2305 368 259 154 62 chr12 43025193 43025452 -101257037 - MLT1L LTR MaLR -295 320 38 17325 32 0 1 chr12 43025579 43027684 -101254805 - L1PA3 LINE L1 -1570 4576 2473 7598 26 2 0 chr12 43027684 43029248 -101253241 + L1PA3 LINE L1 4587 6152 -3 26 0 0 0 chr12 43029248 43029274 -101253215 + AT_rich Low_complexity Low_complexity 1 26 0 546 295 14 0 chr12 43031173 43031312 -101251177 + L2 LINE L2 669 809 -2505 1034 205 167 29 chr12 43031340 43031760 -101250729 + Charlie4a DNA MER1_type 31 508 0 663 306 40 82 chr12 43031760 43032139 -101250350 + L2 LINE L2 805 1167 -2147 5171 266 114 77 chr12 43032189 43034815 -101247674 + L2 LINE L2 37 2760 -554 2129 119 0 7 chr12 43034992 43035286 -101247203 - AluSx SINE Alu -18 294 3 29 47 0 0 chr12 43035296 43035339 -101247150 + AT_rich Low_complexity Low_complexity 1 43 0 2184 114 146 13 chr12 43035341 43035719 -101246770 - MSTA LTR MaLR 0 428 1 994 216 30 13 chr12 43035891 43036123 -101246366 - MER106A DNA MER1_type 0 236 1 2392 72 0 13 chr12 43036234 43036539 -101245950 - AluY SINE Alu -10 301 1 33 56 0 0 chr12 43036801 43036855 -101245634 + AT_rich Low_complexity Low_complexity 1 54 0 453 19 0 0 chr12 43036975 43037029 -101245460 + (CA)n Simple_repeat Simple_repeat 1 54 0 360 0 0 0 chr12 43038517 43038557 -101243932 + (TA)n Simple_repeat Simple_repeat 2 41 0 558 273 35 17 chr12 43041334 43041506 -101240983 - MIR SINE MIR -82 180 6 386 183 15 23 chr12 43041947 43042078 -101240411 + (TA)n Simple_repeat Simple_repeat 1 130 0 57 39 0 0 chr12 43042078 43042156 -101240333 + AT_rich Low_complexity Low_complexity 1 78 0 254 152 5 98 chr12 43042156 43042340 -101240149 + (TTTA)n Simple_repeat Simple_repeat 4 170 0 22 0 0 0 chr12 43042852 43042874 -101239615 + AT_rich Low_complexity Low_complexity 1 22 0 1331 242 14 3 chr12 43044831 43045120 -101237369 + AluJb SINE Alu 1 292 -20 361 286 68 20 chr12 43046050 43046197 -101236292 - MIR SINE MIR -89 173 20 293 313 100 27 chr12 43046781 43046931 -101235558 - MIR3 SINE MIR -6 202 42 2421 51 7 0 chr12 43048983 43049279 -101233210 + AluY SINE Alu 1 298 -13 297 0 0 0 chr12 43049858 43049891 -101232598 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 268 228 51 193 chr12 43049892 43050089 -101232400 - MIR SINE MIR -93 169 1 2451 59 0 0 chr12 43050138 43050443 -101232046 - AluY SINE Alu -6 305 1 317 264 72 36 chr12 43050499 43050714 -101231775 - LTR65 LTR ERV1 -14 654 342 334 242 81 0 chr12 43050848 43050947 -101231542 - LTR65 LTR ERV1 -532 137 31 21 36 0 0 chr12 43051271 43051299 -101231190 + AT_rich Low_complexity Low_complexity 1 28 0 2389 4 4 0 chr12 43052594 43052866 -101229623 + L1PA2 LINE L1 5881 6153 -2 390 290 74 25 chr12 43053191 43053353 -101229136 + MIR SINE MIR 9 178 -84 924 174 0 13 chr12 43053932 43054087 -101228402 + FRAM SINE Alu 1 152 -24 22 0 0 0 chr12 43054087 43054109 -101228380 + AT_rich Low_complexity Low_complexity 1 22 0 1376 30 0 0 chr12 43054527 43054692 -101227797 - L1PA4 LINE L1 -3 6152 5988 225 65 0 0 chr12 43056162 43056193 -101226296 + (TAA)n Simple_repeat Simple_repeat 1 31 0 331 288 18 45 chr12 43058172 43058283 -101224206 + MER5B DNA MER1_type 2 109 -69 1642 212 58 10 chr12 43059032 43059428 -101223061 - MLT1C LTR MaLR 0 467 53 863 213 169 15 chr12 43059564 43059837 -101222652 + L1ME1 LINE L1 5835 6149 -17 380 302 48 0 chr12 43059867 43059993 -101222496 + MIR SINE MIR 20 151 -111 411 268 199 54 chr12 43060005 43060266 -101222223 - MLT1K LTR MaLR -8 580 282 2018 136 3 16 chr12 43060414 43060730 -101221759 + AluSx SINE Alu 1 312 0 704 61 0 10 chr12 43060746 43060845 -101221644 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 620 301 151 23 chr12 43061182 43061620 -101220869 - MLT1H LTR MaLR -33 516 23 999 239 158 10 chr12 43061649 43062055 -101220434 - HsTC2 DNA Tc2 -17 1881 1240 2123 224 89 29 chr12 43062071 43062590 -101219899 + MLT1F1 LTR MaLR 13 562 -5 835 270 108 3 chr12 43062692 43062988 -101219501 - HsTC2 DNA Tc2 -1571 327 1 199 123 53 0 chr12 43063714 43063771 -101218718 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 24 0 0 0 chr12 43063896 43063920 -101218569 + AT_rich Low_complexity Low_complexity 1 24 0 279 207 165 33 chr12 43064347 43064468 -101218021 - L1ME LINE L1 -690 5472 5336 2478 129 3 3 chr12 43064515 43064879 -101217610 + THE1B LTR MaLR 1 364 0 10199 122 16 26 chr12 43064880 43066476 -101216013 + THE1B-int LTR MaLR 2 1580 0 229 121 0 0 chr12 43066476 43066509 -101215980 + THE1B LTR MaLR 1 33 -331 414 0 0 0 chr12 43066511 43066557 -101215932 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 41994 39 24 2 chr12 43066557 43072560 -101209929 - L1PA3 LINE L1 -10 6145 15 2165 153 11 3 chr12 43072560 43072912 -101209577 + THE1B LTR MaLR 10 364 0 1446 240 78 57 chr12 43072912 43073079 -101209410 + L1ME3A LINE L1 5610 5772 -398 2159 159 127 38 chr12 43073079 43073552 -101208937 - MLT2B2 LTR ERVL 0 515 1 1446 240 78 57 chr12 43073552 43073710 -101208779 + L1ME3A LINE L1 5772 5925 -245 558 108 11 0 chr12 43073710 43073803 -101208686 + L1MA4 LINE L1 6201 6294 -6 1446 240 78 57 chr12 43073803 43074025 -101208464 + L1ME3A LINE L1 5925 6170 0 218 360 40 45 chr12 43074262 43074484 -101208005 - L2 LINE L2 -207 3065 2845 35 0 0 0 chr12 43074519 43074554 -101207935 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr12 43075109 43075143 -101207346 + AT_rich Low_complexity Low_complexity 1 34 0 920 176 6 6 chr12 43077003 43077162 -101205327 - FRAM SINE Alu -17 159 1 225 204 0 0 chr12 43077180 43077224 -101205265 + T-rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 43077864 43077887 -101204602 + AT_rich Low_complexity Low_complexity 1 23 0 6654 30 0 2 chr12 43077887 43078673 -101203816 - L1PA3 LINE L1 -3 6152 5369 1315 262 97 24 chr12 43079007 43079472 -101203017 - MLT1D LTR MaLR 0 505 7 257 253 110 14 chr12 43081706 43081852 -101200637 + L1MC4 LINE L1 6518 6677 -1365 1330 226 110 30 chr12 43081900 43082337 -101200152 + L1MC4 LINE L1 6657 7128 -914 723 210 217 29 chr12 43082350 43082622 -101199867 - L1M4 LINE L1 -2245 3901 3579 4897 111 14 25 chr12 43082728 43082763 -101199726 + L1PA11 LINE L1 5411 5445 -729 2294 103 0 0 chr12 43082763 43083065 -101199424 + AluSg SINE Alu 4 305 -5 4897 111 14 25 chr12 43083065 43083796 -101198693 + L1PA11 LINE L1 5445 6169 -5 22 56 0 0 chr12 43083800 43083836 -101198653 + AT_rich Low_complexity Low_complexity 1 36 0 357 240 110 14 chr12 43083839 43083985 -101198504 - L1M4 LINE L1 -3141 3005 2846 410 100 17 0 chr12 43083987 43084047 -101198442 - L1PA10 LINE L1 -223 5945 5885 268 150 0 0 chr12 43084061 43084101 -101198388 - tRNA-Thr-ACT tRNA tRNA -37 40 1 1568 231 62 45 chr12 43084119 43084449 -101198040 - L1M4 LINE L1 -3323 2823 2477 405 0 0 0 chr12 43084449 43084494 -101197995 + (TG)n Simple_repeat Simple_repeat 2 46 0 1568 231 62 45 chr12 43084494 43084760 -101197729 - L1M4 LINE L1 -3669 2477 2217 306 313 8 39 chr12 43085205 43085333 -101197156 - MLT1J LTR MaLR -45 466 343 230 242 48 32 chr12 43085487 43085549 -101196940 - MLT1J LTR MaLR -387 124 62 180 0 0 0 chr12 43085624 43085644 -101196845 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 439 284 54 29 chr12 43085680 43085884 -101196605 + MER102a DNA MER1_type 107 315 -15 1309 168 148 16 chr12 43086152 43086456 -101196033 - MER2 DNA MER2_type 0 344 1 282 233 35 23 chr12 43086484 43086570 -101195919 + MIR SINE MIR 155 241 -21 745 295 48 46 chr12 43086647 43087020 -101195469 + HsTC2 DNA Tc2 3 376 -1522 691 198 143 56 chr12 43087016 43087408 -101195081 + HsTC2 DNA Tc2 1278 1891 -7 * 216 0 0 0 chr12 43087714 43087738 -101194751 + (A)n Simple_repeat Simple_repeat 1 24 0 882 145 0 0 chr12 43089584 43089715 -101192774 - AluSg/x SINE Alu -12 298 168 687 204 99 0 chr12 43089997 43090169 -101192320 + MER3 DNA MER1_type 1 189 -20 593 262 81 44 chr12 43090663 43091144 -101191345 - HAL1b LINE L1 -28 1320 822 294 169 0 0 chr12 43091168 43091233 -101191256 + T-rich Low_complexity Low_complexity 1 65 0 1343 270 128 54 chr12 43091276 43091968 -101190521 + L2 LINE L2 2310 3078 -235 4141 125 14 33 chr12 43091968 43092705 -101189784 - L1MA4A LINE L1 -7 6296 5574 1343 270 128 54 chr12 43092705 43092948 -101189541 + L2 LINE L2 3078 3301 -12 1970 214 112 45 chr12 43093094 43093673 -101188816 - MLT1E3 LTR MaLR -6 618 1 438 313 117 13 chr12 43093921 43094151 -101188338 - HAL1b LINE L1 -738 610 357 1353 273 66 22 chr12 43094966 43095544 -101186945 - L1ME3A LINE L1 -183 5987 5385 257 257 9 57 chr12 43095847 43095952 -101186537 + LTR33A LTR ERVL 416 515 -8 326 248 76 0 chr12 43095962 43096067 -101186422 - L1ME3A LINE L1 -770 5392 5280 1285 216 114 23 chr12 43096067 43096418 -101186071 - MLT1B LTR MaLR 0 390 8 688 267 122 39 chr12 43096421 43097035 -101185454 - L1ME3A LINE L1 -858 5288 4624 34 42 0 0 chr12 43097170 43097218 -101185271 + AT_rich Low_complexity Low_complexity 1 48 0 248 343 10 30 chr12 43097385 43097484 -101185005 + L2 LINE L2 2992 3088 -184 712 305 104 59 chr12 43097821 43098313 -101184176 + REP3 LTR ERV 2 515 -47 640 279 28 126 chr12 43098671 43099069 -101183420 + L2 LINE L2 2909 3267 -5 622 213 8 8 chr12 43099451 43099578 -101182911 + FLAM_C SINE Alu 2 128 -5 372 22 0 0 chr12 43100719 43100764 -101181725 + (CA)n Simple_repeat Simple_repeat 2 46 0 1928 177 5 45 chr12 43101455 43101833 -101180656 + MLT1A1 LTR MaLR 3 365 0 200 206 15 29 chr12 43102029 43102097 -101180392 + T-rich Low_complexity Low_complexity 4 70 0 5207 25 2 0 chr12 43102282 43103206 -101179283 - L1PA3 LINE L1 -466 5689 4765 4184 32 0 0 chr12 43103206 43103697 -101178792 + L1PA3 LINE L1 5658 6152 -3 1635 147 29 0 chr12 43103741 43104014 -101178475 + L1PA16 LINE L1 5877 6157 -9 21 0 0 0 chr12 43104863 43104884 -101177605 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr12 43105019 43105061 -101177428 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr12 43105701 43105730 -101176759 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr12 43107703 43107752 -101174737 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr12 43108715 43108740 -101173749 + AT_rich Low_complexity Low_complexity 1 25 0 586 308 72 36 chr12 43109443 43109748 -101172741 + L2 LINE L2 2996 3311 -2 190 250 0 21 chr12 43109764 43109812 -101172677 + MIR SINE MIR 16 62 -200 733 246 34 34 chr12 43109821 43109907 -101172582 + MIR SINE MIR 3 88 -174 2464 122 6 0 chr12 43109907 43110269 -101172220 + THE1B LTR MaLR 1 364 0 733 246 34 34 chr12 43110269 43110361 -101172128 + MIR SINE MIR 87 181 -81 265 297 0 0 chr12 43110488 43110552 -101171937 - MIR3 SINE MIR -45 163 100 24 0 0 0 chr12 43110679 43110703 -101171786 + AT_rich Low_complexity Low_complexity 1 24 0 2175 192 86 22 chr12 43111422 43111911 -101170578 - MLT2B1 LTR ERVL 0 520 1 21 36 0 0 chr12 43113736 43113764 -101168725 + AT_rich Low_complexity Low_complexity 1 28 0 255 333 95 16 chr12 43113826 43113952 -101168537 - MIR SINE MIR -114 148 13 184 317 32 49 chr12 43114223 43114346 -101168143 - L2 LINE L2 -241 3031 2911 1472 211 28 46 chr12 43115405 43115798 -101166691 + MLT1B LTR MaLR 1 386 -4 2195 123 123 3 chr12 43115944 43116326 -101166163 + MSTA LTR MaLR 1 428 0 255 173 0 0 chr12 43116855 43116907 -101165582 + (TA)n Simple_repeat Simple_repeat 2 53 0 186 43 0 0 chr12 43117190 43117213 -101165276 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 387 274 147 18 chr12 43117871 43118073 -101164416 - MIR SINE MIR -44 218 1 1479 184 17 47 chr12 43118330 43118629 -101163860 + AluJo SINE Alu 1 290 -22 206 372 101 44 chr12 43118994 43119429 -101163060 + L2 LINE L2 2813 3272 0 248 260 73 57 chr12 43119880 43120003 -101162486 - MIR SINE MIR -50 212 88 241 313 131 12 chr12 43120016 43120176 -101162313 - MIR3 SINE MIR -19 189 11 296 212 172 80 chr12 43122017 43122168 -101160321 + MLT1K LTR MaLR 424 588 0 342 220 121 0 chr12 43122207 43122298 -101160191 - MIR SINE MIR -117 145 44 25 90 0 0 chr12 43122378 43122445 -101160044 + AT_rich Low_complexity Low_complexity 1 67 0 336 73 0 36 chr12 43122623 43122678 -101159811 - MADE1 DNA Mariner -27 53 1 6605 70 7 1 chr12 43123392 43124471 -101158018 + L1PA7 LINE L1 5056 6143 -11 30 0 0 0 chr12 43124536 43124566 -101157923 + AT_rich Low_complexity Low_complexity 1 30 0 1492 163 0 73 chr12 43124566 43124879 -101157610 - AluJb SINE Alu -22 290 1 3820 321 100 44 chr12 43125081 43125934 -101156555 - L2 LINE L2 -34 3279 2475 1966 151 0 0 chr12 43125934 43126244 -101156245 + AluSx SINE Alu 1 310 0 3820 321 100 44 chr12 43126244 43127370 -101155119 - L2 LINE L2 -838 2475 1414 2639 114 50 19 chr12 43127370 43127791 -101154698 - MER61C LTR ERV1 0 434 1 3820 321 100 44 chr12 43127791 43128565 -101153924 - L2 LINE L2 -1899 1414 347 2248 50 47 27 chr12 43128565 43128866 -101153623 - AluY SINE Alu -4 307 1 3820 321 100 44 chr12 43128866 43129000 -101153489 - L2 LINE L2 -2966 347 222 320 322 128 16 chr12 43129253 43129511 -101152978 + L2 LINE L2 3027 3313 0 590 266 132 21 chr12 43129778 43130079 -101152410 + LTR33 LTR ERVL 144 521 0 364 259 45 36 chr12 43130271 43130383 -101152106 - L2 LINE L2 -2 3270 3158 25 65 0 0 chr12 43130538 43130584 -101151905 + AT_rich Low_complexity Low_complexity 1 46 0 210 208 0 0 chr12 43130644 43130692 -101151797 + (TA)n Simple_repeat Simple_repeat 2 49 0 1459 207 97 21 chr12 43131426 43131592 -101150897 + MLT1C LTR MaLR 1 153 -314 327 78 0 0 chr12 43131592 43131643 -101150846 + (CA)n Simple_repeat Simple_repeat 2 52 0 1459 207 97 21 chr12 43131643 43131910 -101150579 + MLT1C LTR MaLR 153 467 0 2110 127 50 14 chr12 43132270 43132632 -101149857 - THE1C LTR MaLR 0 375 1 9126 127 65 32 chr12 43132632 43133751 -101148738 - THE1C-int LTR MaLR 0 1580 500 305 27 0 0 chr12 43133751 43133788 -101148701 + AluSq/x SINE Alu 100 136 -167 731 205 87 0 chr12 43133788 43133949 -101148540 + FAM SINE Alu 1 175 0 9126 127 65 32 chr12 43133949 43134321 -101148168 - THE1C-int LTR MaLR -1079 501 1 2014 136 55 17 chr12 43134321 43134682 -101147807 - THE1C LTR MaLR 0 375 1 304 252 56 103 chr12 43134707 43134814 -101147675 - MIR SINE MIR -114 148 47 374 151 269 25 chr12 43134819 43134938 -101147551 - MER69A DNA AcHobo -4 173 26 1930 132 0 21 chr12 43135048 43135363 -101147126 - AluSx SINE Alu 0 311 3 24 0 0 0 chr12 43135598 43135622 -101146867 + AT_rich Low_complexity Low_complexity 1 24 0 1126 301 96 34 chr12 43135852 43136740 -101145749 - HAL1 LINE L1 -334 2173 1231 29 101 0 0 chr12 43136746 43136845 -101145644 + AT_rich Low_complexity Low_complexity 1 99 0 200 317 119 30 chr12 43138024 43138125 -101144364 + L2 LINE L2 3154 3263 -9 368 240 0 0 chr12 43140471 43140546 -101141943 - L2 LINE L2 -1372 1942 1868 1490 190 21 31 chr12 43140587 43140740 -101141749 - AluJb SINE Alu -25 287 137 225 0 0 0 chr12 43140740 43140765 -101141724 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1490 190 21 31 chr12 43140765 43140901 -101141588 - AluJb SINE Alu -175 137 1 23 68 0 0 chr12 43140958 43141002 -101141487 + AT_rich Low_complexity Low_complexity 1 44 0 6067 109 19 2 chr12 43141639 43143304 -101139185 - L1PA10 LINE L1 -4 6164 4482 * 17143 36 3 0 chr12 43143294 43146157 -101136332 - L1PA4 LINE L1 0 6155 3286 6013 40 5 0 chr12 43146166 43146923 -101135566 + L1PA4 LINE L1 2520 3280 -2866 2126 127 48 0 chr12 43146922 43147276 -101135213 - L1PA10 LINE L1 -1634 4512 4142 * 21 36 0 0 chr12 43147326 43147354 -101135135 + AT_rich Low_complexity Low_complexity 1 28 0 716 255 94 16 chr12 43147737 43147929 -101134560 - MER58A DNA MER1_type -16 208 2 24 32 0 0 chr12 43148384 43148415 -101134074 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr12 43148619 43148660 -101133829 + AT_rich Low_complexity Low_complexity 1 41 0 2565 115 3 6 chr12 43149835 43150200 -101132289 + THE1B LTR MaLR 1 364 0 452 274 0 26 chr12 43150244 43150357 -101132132 - L2 LINE L2 -1 3312 3203 213 338 27 0 chr12 43151027 43151101 -101131388 + MIR SINE MIR 78 153 -55 4084 23 0 6 chr12 43151276 43151757 -101130732 + L1PA2 LINE L1 5674 6151 -4 501 252 9 0 chr12 43152832 43152943 -101129546 + MIR SINE MIR 130 241 -21 368 319 15 15 chr12 43153159 43153294 -101129195 + MIR SINE MIR 20 154 -108 1494 286 63 29 chr12 43153323 43153953 -101128536 - MLT2F LTR ERVL -11 652 1 315 312 28 28 chr12 43154378 43154487 -101128002 - MER81 DNA DNA 0 114 6 371 301 153 28 chr12 43155654 43155830 -101126659 - MIR SINE MIR -13 249 52 1115 243 143 7 chr12 43155861 43156273 -101126216 + MLT1D LTR MaLR 30 497 -8 185 326 0 0 chr12 43156279 43156328 -101126161 - MIR SINE MIR -213 49 1 477 339 121 18 chr12 43156348 43156666 -101125823 + L2 LINE L2 1247 1627 -1687 1598 266 107 15 chr12 43156666 43157208 -101125281 - MLT1E LTR MaLR -1 592 1 477 339 121 18 chr12 43157208 43157343 -101125146 + L2 LINE L2 1627 1747 -1567 2347 84 6 28 chr12 43157345 43157665 -101124824 - AluSq SINE Alu 0 313 1 359 276 41 89 chr12 43157665 43157958 -101124531 - L1M4 LINE L1 -1008 5138 4860 207 328 0 0 chr12 43159327 43159394 -101123095 + CT-rich Low_complexity Low_complexity 2 68 0 352 313 112 45 chr12 43160332 43160556 -101121933 - MIR SINE MIR -12 250 12 558 303 34 52 chr12 43160591 43160858 -101121631 + MIR SINE MIR 1 262 0 431 317 147 21 chr12 43160922 43161297 -101121192 + MLT1L LTR MaLR 101 522 -93 213 293 0 0 chr12 43162222 43162263 -101120226 - MIR SINE MIR -196 66 26 285 303 87 29 chr12 43162363 43162710 -101119779 + L1ME4a LINE L1 5663 6029 -92 1832 148 7 23 chr12 43162980 43163283 -101119206 - AluJb SINE Alu -14 298 1 20842 35 3 1 chr12 43164035 43167362 -101115127 - L1PA4 LINE L1 -4 6151 2819 1861 44 0 0 chr12 43167362 43167590 -101114899 + L1PA4 LINE L1 2575 2802 -3344 44 35 0 0 chr12 43167788 43167846 -101114643 + AT_rich Low_complexity Low_complexity 1 58 0 382 340 187 5 chr12 43168541 43168744 -101113745 + MIR SINE MIR 2 241 -21 1961 115 0 21 chr12 43170344 43170630 -101111859 - AluSq SINE Alu -2 311 32 246 264 0 28 chr12 43173063 43173135 -101109354 - L2 LINE L2 -57 3256 3187 426 259 132 109 chr12 43173595 43174252 -101108237 - L1M2 LINE L1 -5444 1405 658 2015 114 11 4 chr12 43176833 43177169 -101105320 - AluSx SINE Alu 0 338 1 30 0 0 0 chr12 43177172 43177202 -101105287 + AT_rich Low_complexity Low_complexity 1 30 0 1787 154 21 0 chr12 43177202 43177488 -101105001 - AluSx SINE Alu -20 292 1 21 36 0 0 chr12 43178431 43178459 -101104030 + AT_rich Low_complexity Low_complexity 1 28 0 1528 192 0 39 chr12 43179443 43179750 -101102739 + AluJb SINE Alu 3 297 -15 27 29 0 0 chr12 43179965 43179999 -101102490 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr12 43182252 43182275 -101100214 + AT_rich Low_complexity Low_complexity 1 23 0 1923 156 0 19 chr12 43182989 43183304 -101099185 - AluJb SINE Alu -1 311 3 1609 27 0 0 chr12 43183672 43183857 -101098632 + L1PA3 LINE L1 5966 6150 -5 4472 150 8 12 chr12 43184346 43185112 -101097377 + L1PB4 LINE L1 5393 6155 -1 182 321 0 0 chr12 43186617 43186673 -101095816 + L2 LINE L2 3211 3266 -6 767 193 37 43 chr12 43188595 43188782 -101093707 - MIR SINE MIR 0 262 77 185 271 66 57 chr12 43188714 43188836 -101093653 + L2 LINE L2 1392 1514 -1800 * 185 402 0 0 chr12 43188905 43188992 -101093497 - L2 LINE L2 -508 2806 2720 1455 129 56 43 chr12 43189560 43189883 -101092606 - THE1C LTR MaLR 0 355 1 906 207 89 57 chr12 43190065 43190379 -101092110 - MER5C DNA MER1_type 0 324 1 498 292 77 37 chr12 43190386 43190745 -101091744 + L2 LINE L2 2680 3059 -213 1799 242 121 32 chr12 43190841 43191552 -101090937 - L1ME3A LINE L1 -31 6139 5366 271 64 39 51 chr12 43191578 43191656 -101090833 + (TTAA)n Simple_repeat Simple_repeat 1 77 0 23 92 0 0 chr12 43192456 43192521 -101089968 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr12 43192552 43192580 -101089909 + AT_rich Low_complexity Low_complexity 1 28 0 192 324 28 0 chr12 43192739 43192810 -101089679 - MIR SINE MIR -3 259 187 211 152 0 43 chr12 43193903 43193949 -101088540 + T-rich Low_complexity Low_complexity 4 47 0 192 179 0 0 chr12 43194099 43194138 -101088351 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr12 43194187 43194209 -101088280 + AT_rich Low_complexity Low_complexity 1 22 0 7593 27 0 0 chr12 43194406 43195472 -101087017 - L1PA4 LINE L1 0 6155 5117 22 0 0 0 chr12 43197623 43197645 -101084844 + AT_rich Low_complexity Low_complexity 1 22 0 349 330 45 45 chr12 43197843 43198067 -101084422 - L2 LINE L2 -211 3061 2838 580 343 47 0 chr12 43198228 43198461 -101084028 - L2 LINE L2 -540 2774 2531 1341 75 6 0 chr12 43198590 43198764 -101083725 + MER107 DNA MER1_type 23 197 0 618 278 83 28 chr12 43198878 43199094 -101083395 + MIR SINE MIR 6 233 -29 1685 169 3 36 chr12 43199236 43199538 -101082951 + AluJo SINE Alu 13 304 -8 212 333 70 53 chr12 43199745 43199859 -101082630 - MIR3 SINE MIR -11 197 82 308 309 45 9 chr12 43200378 43200488 -101082001 + MER5A DNA MER1_type 2 115 -74 22 35 0 0 chr12 43201177 43201206 -101081283 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr12 43201632 43201661 -101080828 + AT_rich Low_complexity Low_complexity 1 29 0 633 216 81 0 chr12 43202349 43202497 -101079992 + MER45A DNA AcHobo 1 160 -18 24 53 0 0 chr12 43204480 43204518 -101077971 + AT_rich Low_complexity Low_complexity 1 38 0 2113 159 29 21 chr12 43205209 43205592 -101076897 - MLT1B LTR MaLR -2 388 3 485 220 206 81 chr12 43206074 43206370 -101076119 + MLT1J2 LTR MaLR 94 426 -24 2206 109 0 20 chr12 43207608 43207912 -101074577 - AluSx SINE Alu -14 298 1 442 152 13 0 chr12 43208103 43208182 -101074307 + MADE1 DNA Mariner 1 80 0 209 229 21 0 chr12 43208441 43208489 -101074000 + CT-rich Low_complexity Low_complexity 1 49 0 21 71 0 0 chr12 43208663 43208705 -101073784 + AT_rich Low_complexity Low_complexity 1 42 0 712 217 151 27 chr12 43208738 43209244 -101073245 - MER76 LTR ERV -50 638 6 372 223 43 0 chr12 43209292 43209386 -101073103 - MIR SINE MIR -72 190 93 639 326 25 19 chr12 43211263 43211585 -101070904 + L2 LINE L2 2988 3311 -2 1833 167 0 0 chr12 43212470 43212775 -101069714 + AluJb SINE Alu 1 305 0 396 0 0 0 chr12 43212964 43213008 -101069481 + (CA)n Simple_repeat Simple_repeat 2 45 0 24 39 0 0 chr12 43214431 43214457 -101068032 + GC_rich Low_complexity Low_complexity 1 26 0 367 334 84 52 chr12 43214471 43214911 -101067578 - L1M2 LINE L1 -5907 942 489 180 68 45 23 chr12 43214988 43215032 -101067457 + (CGGGG)n Simple_repeat Simple_repeat 2 46 0 33 0 0 0 chr12 43215036 43215069 -101067420 + GC_rich Low_complexity Low_complexity 1 33 0 209 243 0 0 chr12 43216027 43216064 -101066425 - MIR SINE MIR -196 66 30 280 305 95 37 chr12 43216133 43216513 -101065976 + L1ME4a LINE L1 5628 6029 -92 1839 148 7 23 chr12 43216783 43217086 -101065403 - AluJb SINE Alu -14 298 1 42918 40 21 3 chr12 43217835 43223859 -101058630 - L1PA4 LINE L1 -2 6153 15 2199 153 11 3 chr12 43223859 43224211 -101058278 + THE1B LTR MaLR 10 364 0 1511 240 78 57 chr12 43224211 43224378 -101058111 + L1ME3A LINE L1 5610 5772 -398 2364 152 127 38 chr12 43224378 43224851 -101057638 - MLT2B2 LTR ERVL 0 515 1 1511 240 78 57 chr12 43224851 43225009 -101057480 + L1ME3A LINE L1 5772 5925 -245 616 106 11 0 chr12 43225009 43225103 -101057386 + L1MA4 LINE L1 6201 6295 -5 1511 240 78 57 chr12 43225103 43225325 -101057164 + L1ME3A LINE L1 5925 6170 0 185 355 19 32 chr12 43225543 43225698 -101056791 - L2 LINE L2 -275 2997 2845 36 0 0 0 chr12 43225733 43225769 -101056720 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr12 43226324 43226358 -101056131 + AT_rich Low_complexity Low_complexity 1 34 0 930 170 35 6 chr12 43228217 43228388 -101054101 - AluJo SINE Alu -17 295 120 225 204 0 0 chr12 43228394 43228438 -101054051 + T-rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 43229078 43229101 -101053388 + AT_rich Low_complexity Low_complexity 1 23 0 22029 37 5 2 chr12 43229101 43232426 -101050063 - L1PA3 LINE L1 -3 6152 2819 1858 52 0 4 chr12 43232426 43232655 -101049834 + L1PA3 LINE L1 2575 2802 -3344 44 35 0 0 chr12 43232853 43232911 -101049578 + AT_rich Low_complexity Low_complexity 1 58 0 301 390 0 0 chr12 43233522 43233663 -101048826 + G-rich Low_complexity Low_complexity 1 141 0 251 339 29 12 chr12 43233705 43233876 -101048613 + GA-rich Low_complexity Low_complexity 2 175 0 188 139 0 23 chr12 43233884 43233927 -101048562 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 327 179 0 0 chr12 43234078 43234145 -101048344 + G-rich Low_complexity Low_complexity 1 67 0 291 309 45 9 chr12 43234587 43234697 -101047792 - MER5A DNA MER1_type -74 115 2 193 333 70 53 chr12 43235215 43235329 -101047160 + MIR3 SINE MIR 82 197 -11 1687 166 3 36 chr12 43235536 43235838 -101046651 - AluJo SINE Alu -8 304 13 610 278 83 28 chr12 43235980 43236196 -101046293 - MIR SINE MIR -29 233 6 1370 75 6 0 chr12 43236310 43236484 -101046005 - MER107 DNA MER1_type 0 197 23 579 343 47 0 chr12 43236613 43236846 -101045643 + L2 LINE L2 2531 2774 -540 341 330 45 45 chr12 43237007 43237231 -101045258 + L2 LINE L2 2838 3061 -211 22 0 0 0 chr12 43237429 43237451 -101045038 + AT_rich Low_complexity Low_complexity 1 22 0 48 43 0 0 chr12 43239638 43239707 -101042782 + GC_rich Low_complexity Low_complexity 1 69 0 1030 296 90 19 chr12 43241082 43241548 -101040941 + MLT1D LTR MaLR 7 505 0 6036 65 1 1 chr12 43241881 43242645 -101039844 + L1PA4 LINE L1 5369 6132 -23 248 203 14 40 chr12 43244186 43244260 -101038229 + C-rich Low_complexity Low_complexity 4 75 0 291 110 14 41 chr12 43244361 43244434 -101038055 + (TCCCC)n Simple_repeat Simple_repeat 3 73 0 4982 94 1 1 chr12 43244667 43245358 -101037131 + L1P LINE L1 2520 3210 -2936 215 233 23 23 chr12 43245610 43245696 -101036793 + C-rich Low_complexity Low_complexity 6 91 0 3298 92 2 2 chr12 43245830 43246264 -101036225 + L1PB2 LINE L1 5716 6149 -2 981 146 12 24 chr12 43246276 43246440 -101036049 + FRAM SINE Alu 1 162 -14 1921 146 7 3 chr12 43246444 43246738 -101035751 + AluJb SINE Alu 1 295 -17 191 211 0 0 chr12 43246765 43246803 -101035686 + MER5B DNA MER1_type 141 178 0 334 148 98 0 chr12 43247296 43247357 -101035132 - MLT1C LTR MaLR 0 467 401 2018 121 36 23 chr12 43247360 43247667 -101034822 + AluSx SINE Alu 1 311 -1 188 386 0 0 chr12 43247917 43247987 -101034502 + L2 LINE L2 3201 3270 -2 543 303 65 13 chr12 43248835 43249066 -101033423 + HsTC2 DNA Tc2 1 243 -1655 213 318 8 8 chr12 43249263 43249395 -101033094 + (CCCG)n Simple_repeat Simple_repeat 3 134 0 23 54 0 0 chr12 43249455 43249492 -101032997 + GC_rich Low_complexity Low_complexity 1 37 0 321 313 112 45 chr12 43249769 43249993 -101032496 - MIR SINE MIR -12 250 12 509 307 34 52 chr12 43250028 43250295 -101032194 + MIR SINE MIR 1 262 0 25 65 0 0 chr12 43250729 43250775 -101031714 + GC_rich Low_complexity Low_complexity 1 46 0 674 220 187 14 chr12 43251360 43251574 -101030915 - MIR SINE MIR -10 252 2 457 286 243 9 chr12 43251638 43251848 -101030641 + MER115 DNA AcHobo 12 270 -423 6887 151 8 22 chr12 43252249 43253349 -101029140 + L1P3 LINE L1 138 1274 -4835 189 74 0 0 chr12 43253349 43253376 -101029113 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6887 151 8 22 chr12 43253376 43253477 -101029012 + L1P3 LINE L1 1274 1375 -4734 348 299 28 7 chr12 43254326 43254470 -101028019 - L2 LINE L2 -270 3002 2856 201 181 60 129 chr12 43254699 43254815 -101027674 + L2 LINE L2 3206 3313 0 234 91 0 0 chr12 43256287 43256320 -101026169 + (A)n Simple_repeat Simple_repeat 1 33 0 201 147 0 0 chr12 43256459 43256493 -101025996 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr12 43257941 43257970 -101024519 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr12 43259986 43260041 -101022448 + AT_rich Low_complexity Low_complexity 1 55 0 4432 31 7 0 chr12 43260605 43261146 -101021343 - L1PA4 LINE L1 -870 5276 4732 6967 43 2 1 chr12 43261146 43262004 -101020485 + L1PA4 LINE L1 5293 6151 -4 507 262 59 53 chr12 43263641 43263828 -101018661 - Charlie8 DNA MER1_type -2229 188 1 212 329 19 51 chr12 43264566 43264724 -101017765 - L2 LINE L2 -627 2687 2535 5118 146 0 6 chr12 43265568 43266417 -101016072 - L1PA11 LINE L1 -1038 5108 4265 1775 86 3 4 chr12 43266412 43266780 -101015709 + L1PA11 LINE L1 5125 5492 -669 * 27 0 0 0 chr12 43266801 43266828 -101015661 + AT_rich Low_complexity Low_complexity 1 27 0 4772 94 18 17 chr12 43266837 43267542 -101014947 + L1PA11 LINE L1 5467 6172 -2 2191 135 16 28 chr12 43268621 43268984 -101013505 - MLT1A1 LTR MaLR -5 360 2 847 223 112 14 chr12 43269125 43269340 -101013149 - MER46A DNA MER2_type 0 236 1 672 326 23 9 chr12 43269505 43269720 -101012769 + MIR SINE MIR 20 237 -25 963 261 76 36 chr12 43269904 43270234 -101012255 + MLT2F LTR ERVL 18 360 -303 225 0 0 0 chr12 43270684 43270709 -101011780 + (CA)n Simple_repeat Simple_repeat 2 26 0 251 162 0 0 chr12 43270726 43270763 -101011726 - AluJb SINE Alu -187 115 79 43 20 0 0 chr12 43271667 43271717 -101010772 + AT_rich Low_complexity Low_complexity 1 50 0 1615 285 136 17 chr12 43271952 43272723 -101009766 + L2 LINE L2 2090 3027 -286 2831 12 0 19 chr12 43272723 43273045 -101009444 - AluYb8 SINE Alu -2 316 1 1615 285 136 17 chr12 43273045 43273371 -101009118 + L2 LINE L2 3027 3313 0 205 333 122 0 chr12 43273390 43273480 -101009009 - L2 LINE L2 -10 3303 3203 358 259 91 0 chr12 43273555 43273698 -101008791 + L1MC5 LINE L1 7720 7875 -86 190 331 86 22 chr12 43275073 43275212 -101007277 - L2 LINE L2 -1 3312 3165 486 256 70 8 chr12 43275337 43275466 -101007023 + MER5A DNA MER1_type 10 146 -43 219 314 105 24 chr12 43275362 43275486 -101007003 - MER5A DNA MER1_type -28 161 28 * 34 42 0 0 chr12 43276801 43276849 -101005640 + AT_rich Low_complexity Low_complexity 1 48 0 212 250 0 36 chr12 43277139 43277195 -101005294 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 351 130 52 39 chr12 43277250 43277327 -101005162 + MADE1 DNA Mariner 3 80 0 7731 136 26 14 chr12 43278449 43279734 -101002755 - HSMAR2 DNA Mariner -1 1301 1 1593 203 0 0 chr12 43279889 43280193 -101002296 + AluJo SINE Alu 1 304 0 1322 208 200 31 chr12 43280225 43280521 -101001968 + L1ME1 LINE L1 5566 5811 -355 1964 130 21 0 chr12 43280521 43280806 -101001683 + AluSg SINE Alu 1 291 -19 1322 208 200 31 chr12 43280806 43281019 -101001470 + L1ME1 LINE L1 5811 6161 -5 1590 189 6 6 chr12 43281158 43281481 -101001008 - L1 LINE L1 -927 5219 4897 * 3348 155 17 3 chr12 43281480 43282067 -101000422 + L1MA4 LINE L1 5426 6020 -280 330 67 0 0 chr12 43282081 43282126 -101000363 + (TG)n Simple_repeat Simple_repeat 2 46 0 275 203 40 0 chr12 43282126 43282194 -101000295 + L1MB2 LINE L1 6091 6161 -10 366 293 177 7 chr12 43282317 43282464 -101000025 - MIR SINE MIR -38 224 53 213 366 42 0 chr12 43282628 43282699 -100999790 - L2 LINE L2 -2 3311 3238 1089 181 105 34 chr12 43282865 43283103 -100999386 + AluJo SINE Alu 1 255 -57 226 48 0 48 chr12 43283105 43283147 -100999342 + (GAAAA)n Simple_repeat Simple_repeat 3 42 0 307 0 47 0 chr12 43283463 43283506 -100998983 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2516 158 14 7 chr12 43283673 43284091 -100998398 - MSTB LTR MaLR -4 422 2 430 176 41 29 chr12 43284622 43284723 -100997766 + MLT1A1 LTR MaLR 276 365 0 419 304 79 75 chr12 43284751 43285247 -100997242 + L2 LINE L2 2271 2768 -546 1193 184 19 60 chr12 43285257 43285515 -100996974 - MLT1A1 LTR MaLR -69 388 40 245 315 99 33 chr12 43285534 43285747 -100996742 - L2 LINE L2 -1078 2236 2010 422 284 159 0 chr12 43285960 43286136 -100996353 - MIR SINE MIR -10 252 49 241 250 17 0 chr12 43286391 43286451 -100996038 + GA-rich Low_complexity Low_complexity 2 62 0 770 266 54 14 chr12 43286688 43286910 -100995579 - L2 LINE L2 0 3313 3083 26 30 0 0 chr12 43287724 43287757 -100994732 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr12 43288565 43288588 -100993901 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 43288646 43288667 -100993822 + AT_rich Low_complexity Low_complexity 1 21 0 2419 77 0 0 chr12 43289533 43289844 -100992645 - AluY SINE Alu 0 311 1 21 36 0 0 chr12 43291009 43291037 -100991452 + AT_rich Low_complexity Low_complexity 1 28 0 1124 86 0 0 chr12 43291326 43291465 -100991024 + AluSq/x SINE Alu 1 139 -173 2046 138 0 0 chr12 43291466 43291757 -100990732 + AluSx SINE Alu 7 297 -15 1885 139 51 12 chr12 43292835 43293166 -100989323 + L1PA16 LINE L1 5819 6162 -4 27 81 0 0 chr12 43293411 43293473 -100989016 + AT_rich Low_complexity Low_complexity 1 62 0 336 208 104 0 chr12 43293800 43293906 -100988583 + MER113 DNA MER1_type? 110 226 -295 2840 3 0 0 chr12 43294085 43294391 -100988098 + AluYa5 SINE Alu 1 306 -5 437 250 200 0 chr12 43295286 43295446 -100987043 - MER117 DNA MER1_type -4 193 2 211 200 0 50 chr12 43295454 43295514 -100986975 + A-rich Low_complexity Low_complexity 4 60 0 1941 132 9 38 chr12 43295603 43295922 -100986567 + AluSq SINE Alu 1 310 -3 182 207 0 171 chr12 43296085 43296167 -100986322 - L2 LINE L2 -8 3305 3238 260 285 139 29 chr12 43296202 43296339 -100986150 - MIR SINE MIR -32 230 79 195 253 81 30 chr12 43298157 43298256 -100984233 + MIR SINE MIR 102 205 -57 604 35 23 0 chr12 43298316 43298403 -100984086 + (TG)n Simple_repeat Simple_repeat 2 90 0 22 56 0 0 chr12 43302369 43302405 -100980084 + AT_rich Low_complexity Low_complexity 1 36 0 251 340 196 21 chr12 43302674 43302868 -100979621 - L3 LINE CR1 -107 1470 1243 366 281 129 57 chr12 43302910 43303227 -100979262 + L3 LINE CR1 403 742 -835 * 556 297 95 9 chr12 43303214 43303446 -100979043 + L2 LINE L2 2956 3207 -106 830 186 23 40 chr12 43304146 43304323 -100978166 + MER106A DNA MER1_type 5 178 -58 217 184 0 58 chr12 43304516 43304603 -100977886 + (TA)n Simple_repeat Simple_repeat 2 83 0 199 200 25 0 chr12 43304695 43304735 -100977754 - MIR SINE MIR -161 101 61 210 348 68 25 chr12 43304736 43304854 -100977635 + MIR SINE MIR 106 228 -34 685 167 54 6 chr12 43304958 43305122 -100977367 + L1MC3 LINE L1 7612 7994 -1 203 318 102 11 chr12 43307233 43307321 -100975168 + MIR3 SINE MIR 89 184 -24 12812 98 4 5 chr12 43307975 43309863 -100972626 + L1PA7 LINE L1 8 1891 -4570 18465 98 9 2 chr12 43309876 43314071 -100968418 + L1PA7 LINE L1 2251 6469 0 240 170 0 0 chr12 43314377 43314430 -100968059 + T-rich Low_complexity Low_complexity 1 53 0 348 264 82 93 chr12 43315234 43315416 -100967073 + MIR3 SINE MIR 16 195 -13 25 31 0 0 chr12 43319203 43319235 -100963254 + AT_rich Low_complexity Low_complexity 1 32 0 226 348 62 0 chr12 43319432 43319544 -100962945 + MIR SINE MIR 34 152 -110 239 272 26 131 chr12 43320957 43321270 -100961219 - MLT1J2 LTR MaLR -93 357 78 283 205 150 50 chr12 43322235 43322361 -100960128 + MIR SINE MIR 2 142 -66 27 49 0 0 chr12 43322586 43322627 -100959862 + AT_rich Low_complexity Low_complexity 1 41 0 850 272 57 17 chr12 43322870 43323338 -100959151 + HAL1 LINE L1 1190 1770 -737 7966 138 5 21 chr12 43323638 43324733 -100957756 + HSMAR2 DNA Mariner 2 1074 -228 2013 142 7 0 chr12 43324733 43325036 -100957453 + AluJb SINE Alu 1 305 -7 7966 138 5 21 chr12 43325036 43325262 -100957227 + HSMAR2 DNA Mariner 1074 1302 0 28 0 0 0 chr12 43327699 43327727 -100954762 + AT_rich Low_complexity Low_complexity 1 28 0 241 379 8 32 chr12 43329841 43329965 -100952524 + MIR SINE MIR 20 140 -122 202 194 0 0 chr12 43330118 43330154 -100952335 + (TG)n Simple_repeat Simple_repeat 1 36 0 256 228 76 0 chr12 43330157 43330236 -100952253 + L1MC4 LINE L1 6614 6698 -1344 26 0 0 0 chr12 43330327 43330353 -100952136 + AT_rich Low_complexity Low_complexity 1 26 0 363 60 0 0 chr12 43330991 43331041 -100951448 + (CA)n Simple_repeat Simple_repeat 2 51 0 718 250 16 49 chr12 43332451 43332695 -100949794 - MER106A DNA MER1_type 0 236 1 198 268 134 21 chr12 43332859 43332956 -100949533 + L2 LINE L2 1381 1488 -1826 261 250 18 0 chr12 43333402 43333458 -100949031 + MIR SINE MIR 203 259 -3 1253 217 110 36 chr12 43333471 43333807 -100948682 - MLT1A2 LTR MaLR -13 361 1 3936 223 61 91 chr12 43333813 43335215 -100947274 - MLT1A2-int LTR MaLR -7 1364 5 1159 181 15 128 chr12 43335219 43335611 -100946878 - MLT1A1 LTR MaLR 0 365 18 1761 167 70 30 chr12 43337264 43337635 -100944854 - MSTD LTR MaLR -1 395 10 180 0 0 0 chr12 43337737 43337757 -100944732 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 23 0 0 0 chr12 43337824 43337847 -100944642 + AT_rich Low_complexity Low_complexity 1 23 0 2103 151 0 0 chr12 43337984 43338288 -100944201 - AluSx SINE Alu -8 304 1 216 67 0 0 chr12 43338308 43338338 -100944151 + (TG)n Simple_repeat Simple_repeat 1 30 0 272 256 163 12 chr12 43339490 43339576 -100942913 - MER5B DNA MER1_type -90 99 1 2477 113 17 11 chr12 43340520 43340882 -100941607 - THE1B LTR MaLR 0 364 1 276 370 115 42 chr12 43342382 43342739 -100939750 - L2 LINE L2 -18 3254 2872 21 0 0 0 chr12 43343532 43343553 -100938936 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr12 43344512 43344551 -100937938 + (TG)n Simple_repeat Simple_repeat 2 40 0 257 50 0 25 chr12 43345104 43345144 -100937345 + (TA)n Simple_repeat Simple_repeat 1 39 0 1983 166 25 6 chr12 43345261 43345617 -100936872 - MLT2D LTR ERVL -48 366 4 389 142 133 62 chr12 43346446 43346559 -100935930 - L1ME4a LINE L1 -15 6106 5986 222 349 85 0 chr12 43346817 43346923 -100935566 + MIR3 SINE MIR 14 128 -80 393 250 30 15 chr12 43348909 43349041 -100933448 + L1ME4a LINE L1 5977 6110 -11 1723 153 30 0 chr12 43350086 43350381 -100932108 - AluSx SINE Alu -8 304 1 2394 70 0 19 chr12 43350534 43350850 -100931639 - AluY SINE Alu 0 311 2 210 191 0 0 chr12 43350917 43350964 -100931525 + T-rich Low_complexity Low_complexity 3 49 0 22 0 0 0 chr12 43351366 43351388 -100931101 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 43351655 43351686 -100930803 + AT_rich Low_complexity Low_complexity 1 31 0 22 80 0 0 chr12 43351765 43351815 -100930674 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr12 43351892 43351914 -100930575 + AT_rich Low_complexity Low_complexity 1 22 0 232 111 0 0 chr12 43352703 43352739 -100929750 + MADE1 DNA Mariner 1 36 -44 851 187 137 70 chr12 43352753 43353052 -100929437 + MER33 DNA MER1_type 2 320 -4 1697 188 30 7 chr12 43354029 43354333 -100928156 - AluJb SINE Alu -1 311 1 276 130 0 0 chr12 43355849 43355895 -100926594 + (TG)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr12 43355996 43356019 -100926470 + AT_rich Low_complexity Low_complexity 1 23 0 812 202 54 39 chr12 43356380 43356583 -100925906 + AluJo SINE Alu 86 291 -21 400 188 0 103 chr12 43358382 43358499 -100923990 + MIR SINE MIR 48 152 -110 263 266 62 62 chr12 43358585 43358698 -100923791 + MIR SINE MIR 150 262 0 1559 138 240 10 chr12 43359677 43359981 -100922508 - THE1C LTR MaLR 0 375 2 625 351 128 17 chr12 43360067 43360851 -100921638 - L2 LINE L2 -1977 1337 467 650 299 35 35 chr12 43360911 43361165 -100921324 - MIR SINE MIR 0 262 9 180 111 0 0 chr12 43362445 43362472 -100920017 + (A)n Simple_repeat Simple_repeat 1 27 0 980 48 0 0 chr12 43363321 43363445 -100919044 - L1PA5 LINE L1 -1 6153 6030 3477 139 22 74 chr12 43364594 43365321 -100917168 - LTR8 LTR ERV1 -2 689 1 750 211 0 0 chr12 43365980 43366113 -100916376 - FLAM_A SINE Alu 0 133 1 1504 181 22 27 chr12 43366500 43366903 -100915586 + L1MA6 LINE L1 3125 3525 -2621 * 6358 162 11 9 chr12 43366902 43368783 -100913706 + L1MA3 LINE L1 4408 6292 -13 9004 166 22 25 chr12 43368794 43371193 -100911296 + L1MA6 LINE L1 3507 5907 -393 1325 218 12 0 chr12 43371192 43371513 -100910976 - L1 LINE L1 -2685 3461 3137 * 399 114 14 0 chr12 43371513 43371577 -100910912 + L1PB2 LINE L1 6074 6144 -7 1783 172 16 11 chr12 43371577 43371940 -100910549 + L1MA6 LINE L1 5931 6298 -2 21 36 0 0 chr12 43372757 43372785 -100909704 + AT_rich Low_complexity Low_complexity 1 28 0 206 22 22 65 chr12 43372793 43372839 -100909650 + (TA)n Simple_repeat Simple_repeat 2 45 0 234 288 55 0 chr12 43374106 43374179 -100908310 - MIR SINE MIR -116 146 70 2455 71 0 0 chr12 43374236 43374545 -100907944 + AluY SINE Alu 1 309 -2 23 0 0 0 chr12 43374545 43374568 -100907921 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 43374638 43374659 -100907830 + AT_rich Low_complexity Low_complexity 1 21 0 3998 198 31 7 chr12 43374752 43375844 -100906645 - L1MB8 LINE L1 -51 6127 5009 2379 181 33 61 chr12 43376312 43376855 -100905634 + Charlie1a DNA MER1_type 1 528 -927 738 247 0 0 chr12 43376863 43377025 -100905464 + Charlie1a DNA MER1_type 926 1087 -368 507 236 69 37 chr12 43377033 43377279 -100905210 + Charlie1a DNA MER1_type 1202 1455 0 22 0 0 0 chr12 43377571 43377593 -100904896 + AT_rich Low_complexity Low_complexity 1 22 0 343 304 39 0 chr12 43378157 43378259 -100904230 - L2 LINE L2 0 3313 3208 184 299 102 54 chr12 43379097 43379244 -100903245 - L2 LINE L2 -950 2364 2211 2074 133 146 8 chr12 43379446 43379822 -100902667 - MSTA LTR MaLR 0 428 1 638 209 0 9 chr12 43379920 43380063 -100902426 + FLAM_A SINE Alu 2 143 0 332 329 175 15 chr12 43380112 43380455 -100902034 - L2 LINE L2 -1291 2023 1626 202 200 0 0 chr12 43381316 43381356 -100901133 + (CTCA)n Simple_repeat Simple_repeat 3 42 0 364 322 104 28 chr12 43381692 43381903 -100900586 + LTR67 LTR ERVL 324 550 -7 196 413 48 11 chr12 43381918 43382107 -100900382 - L2 LINE L2 -494 2820 2625 189 353 38 9 chr12 43383070 43383180 -100899309 + MIR SINE MIR 39 152 -56 291 146 0 0 chr12 43385189 43385244 -100897245 + (TC)n Simple_repeat Simple_repeat 1 55 0 294 297 83 7 chr12 43385305 43385450 -100897039 - MIR SINE MIR -7 255 100 328 302 43 35 chr12 43385502 43385618 -100896871 - L2 LINE L2 -1 3271 3155 341 268 117 40 chr12 43386540 43386683 -100895806 - MIR SINE MIR -48 160 5 32 0 0 0 chr12 43386993 43387025 -100895464 + AT_rich Low_complexity Low_complexity 1 32 0 2162 105 42 33 chr12 43387513 43387874 -100894615 + THE1B LTR MaLR 1 364 0 357 295 118 18 chr12 43388464 43388620 -100893869 - MER5B DNA MER1_type -21 168 1 342 0 0 0 chr12 43388995 43389033 -100893456 + (TG)n Simple_repeat Simple_repeat 2 39 0 259 232 14 29 chr12 43389043 43389112 -100893377 + (CATA)n Simple_repeat Simple_repeat 4 71 0 25 0 0 0 chr12 43390436 43390461 -100892028 + AT_rich Low_complexity Low_complexity 1 25 0 2191 132 3 0 chr12 43395294 43395605 -100886884 + AluSx SINE Alu 1 312 0 25 0 0 0 chr12 43395849 43395874 -100886615 + AT_rich Low_complexity Low_complexity 1 25 0 503 325 55 55 chr12 43397304 43397723 -100884766 - L1MEc LINE L1 -3551 2578 2160 235 296 98 15 chr12 43398420 43398623 -100883866 - L1MEc LINE L1 -4790 1520 1301 369 300 86 22 chr12 43398629 43398896 -100883593 - L1MEc LINE L1 -4865 1254 971 22 35 0 0 chr12 43398916 43398945 -100883544 + AT_rich Low_complexity Low_complexity 1 29 0 21 82 0 0 chr12 43399185 43399234 -100883255 + AT_rich Low_complexity Low_complexity 1 49 0 225 398 48 6 chr12 43399423 43399589 -100882900 - L1MEc LINE L1 -5666 453 281 263 240 54 47 chr12 43399757 43399886 -100882603 - L1MEc LINE L1 -5980 139 10 198 260 269 10 chr12 43400029 43400133 -100882356 + L2 LINE L2 3132 3262 -10 224 338 155 30 chr12 43400335 43400631 -100881858 - L2 LINE L2 0 3313 2981 7189 100 10 25 chr12 43400957 43402044 -100880445 - MER11C LTR ERVK 0 1071 1 565 245 96 55 chr12 43402044 43402372 -100880117 - LTR35 LTR ERV1 -7 672 349 212 270 32 0 chr12 43402760 43402823 -100879666 - L2 LINE L2 -1019 2295 2231 966 271 61 32 chr12 43402832 43403027 -100879462 + MLT1F1 LTR MaLR 1 189 -378 213 39 0 0 chr12 43403027 43403053 -100879436 + (TC)n Simple_repeat Simple_repeat 2 27 0 966 271 61 32 chr12 43403053 43403377 -100879112 + MLT1F1 LTR MaLR 189 567 0 571 252 50 0 chr12 43403498 43403637 -100878852 - MIR SINE MIR -13 249 104 8441 200 36 22 chr12 43403666 43403804 -100878685 - L1MA9 LINE L1 -1 6311 6176 183 100 0 0 chr12 43403804 43403834 -100878655 + (TG)n Simple_repeat Simple_repeat 1 30 0 8441 200 36 22 chr12 43403834 43405487 -100877002 - L1MA9 LINE L1 -136 6176 4547 1893 98 4 4 chr12 43405487 43405742 -100876747 + AluY SINE Alu 39 293 -18 8441 200 36 22 chr12 43405742 43406587 -100875902 - L1MA9 LINE L1 -1765 4547 3684 2243 119 0 0 chr12 43406587 43406889 -100875600 - AluSq SINE Alu -11 302 1 8441 200 36 22 chr12 43406889 43407508 -100874981 - L1MA9 LINE L1 -2628 3684 3075 232 385 0 12 chr12 43407801 43407884 -100874605 + MIR SINE MIR 21 102 -160 2647 186 30 35 chr12 43407891 43408434 -100874055 + MLT1F1 LTR MaLR 1 540 -27 873 208 49 6 chr12 43408507 43408690 -100873799 - MER3 DNA MER1_type -2 207 17 669 169 93 41 chr12 43408691 43408863 -100873626 - FRAM SINE Alu 0 176 1 738 123 25 0 chr12 43408979 43409101 -100873388 - AluYa8 SINE Alu -21 289 165 3023 82 2 0 chr12 43409101 43409525 -100872964 - L1P LINE L1 -4296 1850 1426 355 262 70 96 chr12 43409764 43409951 -100872538 - MIR3 SINE MIR -13 195 14 390 279 20 0 chr12 43410135 43410282 -100872207 - AluSq/x SINE Alu -152 150 1 3059 269 58 46 chr12 43410626 43413609 -100868880 - L1 LINE L1 -2807 3543 853 977 42 0 0 chr12 43415429 43415547 -100866942 - AluSg/x SINE Alu -3 306 189 228 154 0 26 chr12 43415569 43415608 -100866881 - Alu SINE Alu -13 289 252 262 287 127 84 chr12 43416120 43416357 -100866132 + MIR SINE MIR 4 250 -12 573 323 151 39 chr12 43416442 43416873 -100865616 - L2 LINE L2 0 3313 2835 5178 181 11 0 chr12 43416874 43417809 -100864680 + L1PA13 LINE L1 3255 4199 -1947 5449 78 65 39 chr12 43417813 43418737 -100863752 + L1PA13 LINE L1 4397 5373 -790 1670 158 0 28 chr12 43418737 43419022 -100863467 + AluSx SINE Alu 1 277 -35 5449 78 65 39 chr12 43419022 43419835 -100862654 + L1PA13 LINE L1 5373 6163 0 1184 277 108 13 chr12 43419839 43420236 -100862253 - L2 LINE L2 -475 2839 2405 24 0 0 0 chr12 43420713 43420737 -100861752 + AT_rich Low_complexity Low_complexity 1 24 0 284 307 19 26 chr12 43423668 43423950 -100858539 + MER112 DNA MER1_type 1 260 0 217 274 20 0 chr12 43424396 43424447 -100858042 - L2 LINE L2 -2 3270 3219 1086 241 24 130 chr12 43425018 43425402 -100857087 - MLT1H1 LTR MaLR 0 555 216 1267 249 25 17 chr12 43425402 43425764 -100856725 - MLT1A1 LTR MaLR 0 365 1 1086 241 24 130 chr12 43425764 43425793 -100856696 - MLT1H1 LTR MaLR -339 216 186 1809 195 65 111 chr12 43425876 43426444 -100856045 - MLT1F1 LTR MaLR 0 567 26 704 240 31 110 chr12 43426458 43426812 -100855677 - MLT1F1-int LTR MaLR 0 1371 1046 642 325 20 14 chr12 43427577 43427872 -100854617 - MLT1F1-int LTR MaLR -784 587 291 279 79 0 0 chr12 43427986 43428024 -100854465 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1011 191 37 19 chr12 43428057 43428272 -100854217 - MLT1F1 LTR MaLR -1 566 348 2196 94 0 33 chr12 43430103 43430410 -100852079 + AluY SINE Alu 13 309 -2 32 0 0 0 chr12 43430614 43430646 -100851843 + AT_rich Low_complexity Low_complexity 1 32 0 752 301 28 20 chr12 43430803 43431052 -100851437 - LTR16A LTR ERVL 0 450 200 954 223 19 5 chr12 43432779 43432985 -100849504 + MER3 DNA MER1_type 1 209 0 25 31 0 0 chr12 43433486 43433518 -100848971 + AT_rich Low_complexity Low_complexity 1 32 0 32 26 0 0 chr12 43433764 43433803 -100848686 + AT_rich Low_complexity Low_complexity 1 39 0 203 305 17 0 chr12 43434788 43434847 -100847642 + L2 LINE L2 3203 3262 -10 192 77 0 0 chr12 43434850 43434876 -100847613 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 229 256 0 70 chr12 43436050 43436136 -100846353 - L2 LINE L2 -8 3264 3185 2113 124 3 0 chr12 43436408 43436691 -100845798 - AluSq SINE Alu -29 284 1 219 319 92 34 chr12 43436955 43437247 -100845242 - L2 LINE L2 -660 2654 2346 1786 107 76 17 chr12 43439441 43439731 -100842758 - L1PA13 LINE L1 0 6163 5857 225 191 21 21 chr12 43440150 43440197 -100842292 + L2 LINE L2 3247 3293 -20 201 304 43 14 chr12 43441256 43441325 -100841164 + L2 LINE L2 2685 2755 -559 21 36 0 0 chr12 43441762 43441790 -100840699 + AT_rich Low_complexity Low_complexity 1 28 0 2242 123 0 0 chr12 43442953 43443254 -100839235 - AluSq SINE Alu -9 304 4 255 367 9 28 chr12 43444551 43444660 -100837829 + MIR SINE MIR 15 121 -141 226 297 0 16 chr12 43445420 43445484 -100837005 + L2 LINE L2 3249 3311 -2 25 51 0 0 chr12 43445778 43445817 -100836672 + AT_rich Low_complexity Low_complexity 1 39 0 2196 117 0 3 chr12 43446074 43446372 -100836117 + AluSq SINE Alu 1 297 -16 248 102 20 0 chr12 43450179 43450228 -100832261 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 270 301 74 44 chr12 43451393 43451622 -100830867 - L2 LINE L2 -3 3310 3075 1226 125 0 0 chr12 43452286 43452454 -100830035 + AluSg/x SINE Alu 129 296 -14 2517 59 3 0 chr12 43453080 43453387 -100829102 + AluY SINE Alu 2 309 -2 191 95 32 32 chr12 43453776 43453839 -100828650 + T-rich Low_complexity Low_complexity 3 65 0 239 236 111 0 chr12 43453843 43453915 -100828574 - MLT1J2 LTR MaLR -118 332 253 1837 31 0 0 chr12 43453936 43454158 -100828331 - L1PA4 LINE L1 -8 6147 5926 364 268 58 20 chr12 43454162 43454285 -100828204 - MLT1I LTR MaLR -236 173 47 54 40 0 0 chr12 43454937 43455012 -100827477 + AT_rich Low_complexity Low_complexity 1 75 0 23 33 0 0 chr12 43455135 43455165 -100827324 + AT_rich Low_complexity Low_complexity 1 30 0 2254 80 7 10 chr12 43455431 43455730 -100826759 - AluSp SINE Alu -15 298 1 310 158 66 0 chr12 43455943 43456019 -100826470 - L1MA7 LINE L1 -1 6290 6210 508 330 28 28 chr12 43456098 43456316 -100826173 - MIR SINE MIR -33 229 12 321 200 0 14 chr12 43456575 43456645 -100825844 - MER116 DNA Mariner -9 71 3 340 250 250 7 chr12 43457658 43457802 -100824687 - MIR SINE MIR 0 262 84 700 315 21 8 chr12 43457824 43458062 -100824427 - MIR SINE MIR -15 247 7 310 243 14 14 chr12 43458610 43458680 -100823809 + L2 LINE L2 3242 3311 -2 2318 112 0 0 chr12 43461585 43461890 -100820599 - AluSx SINE Alu -7 305 1 180 53 79 0 chr12 43462229 43462267 -100820222 + (CA)n Simple_repeat Simple_repeat 1 41 0 414 275 42 8 chr12 43462894 43463014 -100819475 + L3b LINE CR1 1225 1348 -235 192 411 53 20 chr12 43465224 43465375 -100817114 + L2 LINE L2 3107 3262 -10 410 296 56 0 chr12 43465609 43465717 -100816772 - MLT1L LTR MaLR -203 412 299 485 331 79 6 chr12 43465963 43466190 -100816299 - MIR SINE MIR -6 256 16 38 89 0 0 chr12 43466415 43466516 -100815973 + AT_rich Low_complexity Low_complexity 1 101 0 383 286 85 35 chr12 43467897 43468096 -100814393 + MIR SINE MIR 52 260 -2 198 327 20 59 chr12 43468150 43468251 -100814238 + MIR SINE MIR 36 132 -76 342 153 0 0 chr12 43468989 43469048 -100813441 + CT-rich Low_complexity Low_complexity 2 60 0 282 344 11 0 chr12 43469595 43469688 -100812801 + L3 LINE CR1 1434 1527 -50 219 333 144 35 chr12 43469813 43470014 -100812475 + MIR SINE MIR 34 256 -6 920 294 83 30 chr12 43470223 43470739 -100811750 + L2 LINE L2 2762 3301 -12 1038 190 4 66 chr12 43472406 43472439 -100810050 + MER20 DNA MER1_type 6 39 -180 1422 128 0 53 chr12 43472439 43472682 -100809807 - MER30 DNA MER1_type 0 230 1 1038 190 4 66 chr12 43472682 43472874 -100809615 + MER20 DNA MER1_type 39 217 -2 224 243 128 53 chr12 43473479 43473592 -100808897 + MIR SINE MIR 33 151 -111 194 379 24 40 chr12 43473725 43473849 -100808640 - MIR3 SINE MIR -83 125 4 24 53 0 0 chr12 43474046 43474084 -100808405 + AT_rich Low_complexity Low_complexity 1 38 0 249 158 0 0 chr12 43474221 43474259 -100808230 - Alu SINE Alu -15 151 114 2024 146 0 0 chr12 43474719 43475028 -100807461 + AluY SINE Alu 1 309 -2 21 57 0 0 chr12 43477727 43477762 -100804727 + AT_rich Low_complexity Low_complexity 1 35 0 235 255 262 21 chr12 43477798 43477943 -100804546 + MIR SINE MIR 83 262 0 204 97 0 0 chr12 43478597 43478628 -100803861 + (TG)n Simple_repeat Simple_repeat 1 31 0 217 319 166 19 chr12 43479002 43479159 -100803330 + L2 LINE L2 2559 2738 -576 338 300 36 7 chr12 43479562 43479702 -100802787 + MIR SINE MIR 119 262 0 192 77 0 0 chr12 43479778 43479804 -100802685 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 459 272 68 6 chr12 43479853 43480015 -100802474 - MIR SINE MIR -71 191 20 244 286 52 0 chr12 43480261 43480338 -100802151 - L2 LINE L2 -4 3309 3229 278 179 9 104 chr12 43481511 43481617 -100800872 - L1MC4 LINE L1 -33 8009 7914 824 157 15 71 chr12 43481628 43481802 -100800687 + L1MC4 LINE L1 7361 7524 -518 1565 216 47 18 chr12 43481802 43482187 -100800302 - MSTD LTR MaLR 0 396 1 824 157 15 71 chr12 43482187 43482209 -100800280 + L1MC4 LINE L1 7524 7546 -496 422 316 58 10 chr12 43482426 43482632 -100799857 - LTR33 LTR ERVL -8 513 298 205 236 28 28 chr12 43483027 43483099 -100799390 + GA-rich Low_complexity Low_complexity 4 75 0 186 208 0 57 chr12 43483642 43483695 -100798794 + MIR SINE MIR 8 57 -205 561 178 0 35 chr12 43485597 43485771 -100796718 + (TA)n Simple_repeat Simple_repeat 1 168 0 304 221 0 87 chr12 43485785 43485889 -100796600 + L1MC4 LINE L1 6614 6708 -1334 200 326 67 34 chr12 43485997 43486086 -100796403 + L2 LINE L2 3158 3249 -23 1412 195 85 3 chr12 43487113 43487431 -100795058 + MER2 DNA MER2_type 1 344 0 5360 170 58 3 chr12 43487530 43489251 -100793238 + L1PA16 LINE L1 4333 6149 -17 1819 86 135 0 chr12 43489792 43490059 -100792430 + AluSp SINE Alu 1 303 0 501 167 9 0 chr12 43491939 43492053 -100790436 + CT-rich Low_complexity Low_complexity 1 115 0 224 329 40 54 chr12 43492449 43492598 -100789891 - L2 LINE L2 -1 3271 3125 1404 212 140 14 chr12 43492869 43493284 -100789205 - MLT1C LTR MaLR 0 467 1 205 189 0 0 chr12 43493502 43493539 -100788950 + (CATA)n Simple_repeat Simple_repeat 2 38 0 234 189 198 3 chr12 43493851 43493932 -100788557 + MIR SINE MIR 56 152 -56 1579 200 0 23 chr12 43494061 43494228 -100788261 - AluJb SINE Alu -19 293 135 180 0 0 0 chr12 43494228 43494248 -100788241 + (TA)n Simple_repeat Simple_repeat 2 21 0 1579 200 0 23 chr12 43494248 43494380 -100788109 - AluJb SINE Alu -177 135 1 265 364 37 25 chr12 43495087 43495249 -100787240 + MIR3 SINE MIR 6 169 -39 592 235 113 113 chr12 43495413 43495724 -100786765 - MLT1J LTR MaLR -200 311 1 556 239 39 17 chr12 43495734 43495914 -100786575 + HAL1 LINE L1 2001 2184 -323 2224 124 0 0 chr12 43495987 43496285 -100786204 + AluSx SINE Alu 1 298 -14 3172 138 11 27 chr12 43496294 43496854 -100785635 + L1MA5A LINE L1 5741 6291 -6 5410 127 6 11 chr12 43496872 43497728 -100784761 - L1PA15-16 LINE L1 -3876 2973 2122 22 0 0 0 chr12 43497810 43497832 -100784657 + AT_rich Low_complexity Low_complexity 1 22 0 318 381 84 44 chr12 43498043 43498494 -100783995 - L2 LINE L2 -341 2973 2505 284 133 78 11 chr12 43498494 43498584 -100783905 + (TA)n Simple_repeat Simple_repeat 2 97 0 2148 93 0 39 chr12 43499542 43499852 -100782637 + AluSq SINE Alu 1 298 -15 271 395 88 29 chr12 43500656 43500894 -100781595 - L2 LINE L2 0 3272 3021 2008 137 34 0 chr12 43504377 43504670 -100777819 - AluSx SINE Alu -9 303 1 22 0 0 0 chr12 43505143 43505165 -100777324 + AT_rich Low_complexity Low_complexity 1 22 0 1858 135 50 33 chr12 43505603 43505965 -100776524 - THE1C LTR MaLR -7 368 1 2654 81 0 0 chr12 43506325 43506673 -100775816 - L1PA7 LINE L1 -4 6150 5803 246 347 132 7 chr12 43507034 43507178 -100775311 - MIR SINE MIR -75 187 26 325 323 169 33 chr12 43507799 43508167 -100774322 - MLT1J2 LTR MaLR -1 449 32 21 0 0 0 chr12 43508306 43508327 -100774162 + AT_rich Low_complexity Low_complexity 1 21 0 284 351 26 13 chr12 43509669 43509820 -100772669 + MIR SINE MIR 3 155 -107 272 312 14 65 chr12 43510010 43510172 -100772317 + MER5A DNA MER1_type 17 170 -8 431 204 154 43 chr12 43510507 43510669 -100771820 - MIR SINE MIR -1 261 82 2023 138 7 0 chr12 43510995 43511292 -100771197 + AluSx SINE Alu 13 311 -1 212 335 77 32 chr12 43511448 43511603 -100770886 + L2 LINE L2 3084 3245 -68 217 261 0 0 chr12 43511780 43511826 -100770663 + (TATG)n Simple_repeat Simple_repeat 1 46 0 497 320 96 25 chr12 43511982 43512348 -100770141 - L2 LINE L2 -704 2610 2219 272 250 0 0 chr12 43512787 43512839 -100769650 + MIR SINE MIR 40 91 -171 2399 92 0 3 chr12 43513363 43513668 -100768821 + AluSc SINE Alu 1 304 -5 2193 133 75 2 chr12 43513927 43514326 -100768163 - MSTA LTR MaLR 0 428 1 517 279 57 88 chr12 43514382 43514644 -100767845 - MIR SINE MIR -2 260 7 202 372 12 12 chr12 43514743 43514829 -100767660 - MIR SINE MIR -104 104 19 189 321 0 0 chr12 43515249 43515302 -100767187 + L2 LINE L2 3261 3313 0 201 405 33 20 chr12 43515671 43515824 -100766665 - L2 LINE L2 0 3272 3118 443 266 32 0 chr12 43516088 43516182 -100766307 + MER81 DNA DNA 18 114 0 205 220 40 0 chr12 43516537 43516587 -100765902 + MIR SINE MIR 87 138 -70 1006 240 88 47 chr12 43517290 43517778 -100764711 - L1MC5 LINE L1 -436 7525 7018 2058 116 0 3 chr12 43518675 43518985 -100763504 + AluSg SINE Alu 1 309 0 258 192 27 55 chr12 43524681 43524754 -100757735 - MIR SINE MIR -37 225 155 921 227 163 57 chr12 43527326 43527713 -100754776 + LTR16A LTR ERVL 18 445 -5 34 24 0 0 chr12 43528101 43528142 -100754347 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr12 43528185 43528217 -100754272 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr12 43529418 43529441 -100753048 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 218 257 235 7 chr12 43530650 43530786 -100751703 + MIR SINE MIR 95 261 -1 568 253 74 25 chr12 43530796 43530958 -100751531 - MIR SINE MIR -71 191 22 193 294 0 0 chr12 43531022 43531073 -100751416 + L2 LINE L2 3263 3313 0 193 353 29 73 chr12 43531447 43531651 -100750838 + L2 LINE L2 2916 3110 -162 260 281 0 34 chr12 43531986 43532075 -100750414 - HsTC2 DNA Tc2 -1807 91 6 216 363 39 49 chr12 43532652 43532754 -100749735 - L2 LINE L2 -63 3209 3109 25 31 0 0 chr12 43532845 43532877 -100749612 + AT_rich Low_complexity Low_complexity 1 32 0 1620 182 7 26 chr12 43533814 43534116 -100748373 + AluJb SINE Alu 3 298 -14 184 98 24 24 chr12 43534120 43534161 -100748328 + (TA)n Simple_repeat Simple_repeat 1 41 0 2208 118 3 0 chr12 43536861 43537167 -100745322 + AluSg SINE Alu 1 307 -3 531 202 0 0 chr12 43538721 43538815 -100743674 - MER5A DNA MER1_type -83 106 13 613 270 46 29 chr12 43540437 43540611 -100741878 + MER5B DNA MER1_type 1 177 -1 408 240 32 40 chr12 43540703 43540828 -100741661 - L2 LINE L2 -37 3276 3153 190 234 0 21 chr12 43540839 43540886 -100741603 + L2 LINE L2 3266 3311 -2 * 770 278 49 37 chr12 43540884 43541129 -100741360 - MIR SINE MIR 0 262 15 729 274 208 13 chr12 43545045 43545588 -100736901 - L2 LINE L2 0 3313 2651 288 293 152 0 chr12 43547428 43547527 -100734962 + L2 LINE L2 3200 3313 0 185 387 92 7 chr12 43547818 43547960 -100734529 - L3 LINE CR1 -1 1576 1423 264 317 85 105 chr12 43548879 43549242 -100733247 + L2 LINE L2 2917 3272 0 297 256 149 50 chr12 43549576 43549697 -100732792 - MER94 DNA DNA 0 134 2 23 78 0 0 chr12 43550859 43550910 -100731579 + AT_rich Low_complexity Low_complexity 1 51 0 438 285 11 39 chr12 43551345 43551524 -100730965 - L1ME LINE L1 -427 5694 5521 1248 184 18 0 chr12 43551595 43551813 -100730676 + AluJo SINE Alu 55 276 -36 180 314 40 63 chr12 43552797 43552972 -100729517 + L2 LINE L2 2818 2988 -284 408 20 0 0 chr12 43553487 43553536 -100728953 + (CA)n Simple_repeat Simple_repeat 2 50 0 254 261 125 11 chr12 43554494 43554582 -100727907 - MIR SINE MIR -77 131 34 353 241 103 0 chr12 43555960 43556076 -100726413 + MIR SINE MIR 105 232 -30 475 305 183 11 chr12 43556391 43556676 -100725813 - L2 LINE L2 -10 3303 2970 532 228 31 0 chr12 43556747 43556874 -100725615 - L1MA10 LINE L1 -2 6332 6202 * 1793 176 9 3 chr12 43556864 43557205 -100725284 + L1 LINE L1 4273 4615 -1531 651 251 60 6 chr12 43557205 43557372 -100725117 - MIR SINE MIR -65 197 22 889 310 99 65 chr12 43557380 43558068 -100724421 - L2 LINE L2 -357 2957 2247 345 314 195 6 chr12 43558183 43558352 -100724137 + MIR SINE MIR 32 232 -30 183 129 0 0 chr12 43558358 43558389 -100724100 + (TA)n Simple_repeat Simple_repeat 1 31 0 247 305 37 0 chr12 43559177 43559259 -100723230 - HAL1 LINE L1 -1978 529 445 260 0 0 54 chr12 43561054 43561091 -100721398 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 225 178 0 0 chr12 43562064 43562109 -100720380 + (TG)n Simple_repeat Simple_repeat 1 45 0 457 302 146 3 chr12 43563296 43563611 -100718878 - L1ME3A LINE L1 -316 5923 5564 3502 148 72 44 chr12 43563712 43564545 -100717944 - LTR1 LTR ERV1 0 785 1 787 291 89 25 chr12 43564652 43565504 -100716985 - L1ME3A LINE L1 -842 5373 4467 789 256 135 0 chr12 43565507 43565737 -100716752 + MIR SINE MIR 2 262 0 388 266 100 36 chr12 43565776 43566033 -100716456 - L1ME3A LINE L1 -3450 2765 2467 2355 99 0 0 chr12 43566033 43566337 -100716152 - AluSg SINE Alu -6 304 1 388 266 100 36 chr12 43566337 43566518 -100715971 - L1ME3A LINE L1 -3748 2467 2299 371 312 56 49 chr12 43566596 43566862 -100715627 - L1ME3A LINE L1 -4070 2326 2059 2326 75 9 6 chr12 43567150 43567471 -100715018 - L1PA10 LINE L1 -2 6166 5845 494 279 12 17 chr12 43567471 43567643 -100714846 - L1ME3A LINE L1 -4675 1721 1551 791 272 115 81 chr12 43567736 43568410 -100714079 - L1ME3A LINE L1 -5016 1189 480 1712 211 20 28 chr12 43568410 43568809 -100713680 + MSTD LTR MaLR 1 396 0 791 272 115 81 chr12 43568809 43568958 -100713531 - L1ME3A LINE L1 -5725 480 338 3453 151 30 7 chr12 43569023 43569625 -100712864 + L1MC1 LINE L1 5717 6332 -1 23 68 0 0 chr12 43570954 43570998 -100711491 + AT_rich Low_complexity Low_complexity 1 44 0 37 52 0 0 chr12 43571525 43571583 -100710906 + AT_rich Low_complexity Low_complexity 1 58 0 193 146 42 0 chr12 43571953 43572001 -100710488 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr12 43572269 43572293 -100710196 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 43573272 43573295 -100709194 + AT_rich Low_complexity Low_complexity 1 23 0 324 0 0 0 chr12 43573730 43573766 -100708723 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2106 104 0 21 chr12 43573769 43574056 -100708433 - AluY SINE Alu -30 281 1 2431 66 0 17 chr12 43574276 43574577 -100707912 - AluY SINE Alu -15 296 1 435 251 2 23 chr12 43575446 43575560 -100706929 + MIR SINE MIR 1 108 -100 327 327 26 9 chr12 43576184 43576297 -100706192 + MIR SINE MIR 48 162 -100 1061 342 49 24 chr12 43576320 43576867 -100705622 - MLT1K LTR MaLR -26 562 2 414 250 67 19 chr12 43577694 43577798 -100704691 + MIR SINE MIR 46 154 -108 216 304 6 88 chr12 43578022 43578193 -100704296 + L2 LINE L2 2807 2963 -309 324 0 0 0 chr12 43578334 43578370 -100704119 + (TG)n Simple_repeat Simple_repeat 1 36 0 483 401 30 19 chr12 43578373 43578742 -100703747 - L2 LINE L2 -1652 1662 1290 658 331 53 39 chr12 43578765 43579103 -100703386 - L2 LINE L2 -1910 1404 1062 252 356 119 10 chr12 43579488 43579690 -100702799 - L2 LINE L2 -2279 1035 812 2213 113 3 7 chr12 43580159 43580469 -100702020 + AluSx SINE Alu 1 309 -3 1393 183 29 76 chr12 43583847 43584230 -100698259 - MLT1A1 LTR MaLR 0 365 1 291 321 36 18 chr12 43584373 43584485 -100698004 - L2 LINE L2 -9 3304 3191 238 125 25 0 chr12 43586060 43586100 -100696389 - U2 snRNA snRNA -147 41 1 1216 194 92 49 chr12 43586249 43586533 -100695956 + AluJo SINE Alu 1 296 -6 273 57 0 0 chr12 43587619 43587654 -100694835 + (TG)n Simple_repeat Simple_repeat 2 36 0 2396 71 0 34 chr12 43587740 43588062 -100694427 + AluY SINE Alu 1 311 0 241 188 21 0 chr12 43588214 43588262 -100694227 + GA-rich Low_complexity Low_complexity 1 49 0 421 262 176 41 chr12 43588771 43588992 -100693497 + MIR SINE MIR 12 262 0 1791 166 63 12 chr12 43589098 43589429 -100693060 - MER7A DNA MER2_type 0 346 1 2318 91 7 3 chr12 43589680 43589989 -100692500 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr12 43590921 43590950 -100691539 + AT_rich Low_complexity Low_complexity 1 29 0 276 77 0 0 chr12 43591979 43592018 -100690471 + (CA)n Simple_repeat Simple_repeat 1 39 0 2444 107 39 8 chr12 43592517 43592880 -100689609 + THE1C LTR MaLR 1 374 -1 215 132 26 0 chr12 43593164 43593202 -100689287 + (CA)n Simple_repeat Simple_repeat 2 40 0 213 261 0 0 chr12 43594121 43594167 -100688322 + (TAA)n Simple_repeat Simple_repeat 2 47 0 520 215 25 0 chr12 43594176 43594297 -100688192 - MIR SINE MIR -17 245 122 216 129 29 14 chr12 43594371 43594441 -100688048 + (TA)n Simple_repeat Simple_repeat 1 71 0 30 69 0 0 chr12 43595641 43595699 -100686790 + AT_rich Low_complexity Low_complexity 1 58 0 234 353 67 8 chr12 43601323 43601442 -100681047 - L2 LINE L2 -4 3268 3143 25 31 0 0 chr12 43601604 43601636 -100680853 + AT_rich Low_complexity Low_complexity 1 32 0 2134 99 4 0 chr12 43601636 43601908 -100680581 - AluSg SINE Alu -33 277 5 1966 155 0 0 chr12 43601912 43602230 -100680259 - AluSx SINE Alu 0 318 1 1034 111 0 0 chr12 43602230 43602365 -100680124 - AluSq/x SINE Alu -178 135 1 201 158 0 0 chr12 43603932 43603970 -100678519 + (TA)n Simple_repeat Simple_repeat 1 38 0 360 0 0 0 chr12 43604146 43604186 -100678303 + (TC)n Simple_repeat Simple_repeat 1 40 0 299 64 0 21 chr12 43604185 43604232 -100678257 + (CA)n Simple_repeat Simple_repeat 1 46 0 * 344 167 93 148 chr12 43607767 43607831 -100674658 - MLT1A2 LTR MaLR -4 370 313 715 173 24 8 chr12 43607831 43607958 -100674531 - FLAM_C SINE Alu -3 130 2 344 167 93 148 chr12 43607958 43608001 -100674488 - MLT1A2 LTR MaLR -61 313 269 403 127 0 0 chr12 43608005 43608060 -100674429 - MLT1B LTR MaLR -332 58 4 34 0 0 0 chr12 43608080 43608114 -100674375 + AT_rich Low_complexity Low_complexity 1 34 0 249 297 59 10 chr12 43610077 43610178 -100672311 + LTR23 LTR ERV1 332 437 0 199 337 98 42 chr12 43610593 43610857 -100671632 + L2 LINE L2 2569 2847 -467 1401 200 0 36 chr12 43610948 43611223 -100671266 - AluJo SINE Alu -23 289 25 37 106 0 0 chr12 43611292 43611434 -100671055 + AT_rich Low_complexity Low_complexity 1 142 0 476 247 178 6 chr12 43612544 43612718 -100669771 + MIR SINE MIR 59 262 0 228 296 24 59 chr12 43614020 43614189 -100668300 - L2 LINE L2 -580 2734 2572 468 195 169 7 chr12 43614236 43614390 -100668099 + MER53 DNA DNA 9 187 -2 317 307 96 44 chr12 43614392 43614662 -100667827 - L2 LINE L2 -779 2535 2252 571 214 194 20 chr12 43614974 43615170 -100667319 - MER46C DNA MER2_type -107 231 2 310 255 22 32 chr12 43615218 43615368 -100667121 - L1MC/D LINE L1 -354 5826 5714 * 1045 192 65 0 chr12 43615366 43615580 -100666909 - L1PB4 LINE L1 -77 6079 5852 519 318 40 20 chr12 43615578 43615776 -100666713 - L1MC/D LINE L1 -2098 5710 5509 * 1322 220 92 19 chr12 43615957 43616426 -100666063 - MER69 DNA AcHobo -11 2515 2013 1209 279 130 43 chr12 43616440 43616851 -100665638 - MER69 DNA AcHobo -1971 555 90 2511 53 0 13 chr12 43616851 43617155 -100665334 + AluY SINE Alu 1 300 -11 1209 279 130 43 chr12 43617155 43617252 -100665237 - MER69 DNA AcHobo -2436 90 3 406 312 241 0 chr12 43617255 43617537 -100664952 + LTR33A LTR ERVL 173 522 -1 1161 141 47 13 chr12 43618141 43618375 -100664114 + L1MA8 LINE L1 6043 6284 -7 974 162 20 25 chr12 43618425 43618623 -100663866 - L1PB2 LINE L1 -14 6137 5941 630 298 56 25 chr12 43619078 43619434 -100663055 - L1ME4a LINE L1 -244 5877 5511 187 188 16 16 chr12 43619841 43619905 -100662584 + (TA)n Simple_repeat Simple_repeat 2 65 0 237 337 139 0 chr12 43619918 43620019 -100662470 + MIR3 SINE MIR 3 117 -91 228 182 23 0 chr12 43624017 43624061 -100658428 + L2 LINE L2 3226 3270 -2 1026 152 53 86 chr12 43624946 43625190 -100657299 + MER46A DNA MER2_type 1 236 0 3085 278 73 37 chr12 43625513 43628059 -100654430 - L1ME4a LINE L1 -289 5766 3135 969 212 42 10 chr12 43628066 43628362 -100654127 - MSTD LTR MaLR -12 384 1 2196 223 34 22 chr12 43628362 43628864 -100653625 - MSTD-int LTR MaLR 0 1735 1228 531 204 0 0 chr12 43628869 43628967 -100653522 - MSTC LTR MaLR -330 98 1 916 271 161 13 chr12 43629034 43629344 -100653145 - MLT1G3 LTR MaLR -34 496 141 1747 189 72 18 chr12 43629353 43629895 -100652594 - L1MB7 LINE L1 -3 6181 5550 522 222 24 0 chr12 43629891 43630017 -100652472 - L1MB7 LINE L1 -1314 4832 4704 * 1207 216 14 7 chr12 43630022 43630305 -100652184 - L1MB7 LINE L1 -3270 2876 2592 240 213 21 11 chr12 43630312 43630406 -100652083 - L1ME4a LINE L1 -2981 3099 3005 436 278 81 7 chr12 43630422 43630637 -100651852 - MER106B DNA MER1_type -1 1058 1 999 259 53 47 chr12 43630653 43630689 -100651800 - L1ME4a LINE L1 -3108 2972 2938 2012 140 0 3 chr12 43630689 43630982 -100651507 - AluSx SINE Alu -4 308 17 999 259 53 47 chr12 43630982 43631454 -100651035 - L1ME4a LINE L1 -3142 2938 2461 887 289 156 24 chr12 43631479 43632035 -100650454 + L1ME4a LINE L1 5255 5900 -221 467 304 70 0 chr12 43632239 43632469 -100650020 - L1ME4a LINE L1 -3631 2449 2204 256 315 84 0 chr12 43632915 43633093 -100649396 - L1ME4a LINE L1 -4576 1685 1493 * 531 200 39 45 chr12 43633089 43633140 -100649349 - L1MA10 LINE L1 -3 6331 6281 1564 253 85 36 chr12 43633140 43633836 -100648653 - L1ME1 LINE L1 -44 6191 5448 3015 115 52 52 chr12 43633836 43634331 -100648158 - MER1A DNA MER1_type 0 529 35 400 239 9 0 chr12 43634349 43634458 -100648031 - L1ME1 LINE L1 -2396 5458 5349 * 680 219 25 74 chr12 43634457 43634699 -100647790 - L1ME1 LINE L1 -6130 266 37 582 259 48 76 chr12 43634812 43635357 -100647132 - L1ME LINE L1 -4893 1368 805 3302 171 32 5 chr12 43635410 43635977 -100646512 - MER7C DNA MER2_type -20 582 1 21 36 0 0 chr12 43636272 43636300 -100646189 + AT_rich Low_complexity Low_complexity 1 28 0 265 277 0 0 chr12 43636304 43636369 -100646120 - LTR67 LTR ERVL -491 66 2 503 265 65 126 chr12 43637218 43637305 -100645184 + MER102a DNA MER1_type 41 132 -1285 1352 150 26 136 chr12 43637305 43637651 -100644838 - AluYb8 SINE Alu 0 308 1 503 265 65 126 chr12 43637651 43637872 -100644617 + MER102a DNA MER1_type 132 330 0 230 244 0 0 chr12 43639574 43639619 -100642870 + polypyrimidine Low_complexity Low_complexity 2 46 0 335 306 32 16 chr12 43640791 43640915 -100641574 - L2 LINE L2 0 3313 3188 489 335 28 24 chr12 43640956 43641204 -100641285 - MIR SINE MIR -12 250 2 1500 139 27 4 chr12 43641240 43641499 -100640990 + L1PB4 LINE L1 5874 6138 -18 328 301 99 58 chr12 43642048 43642493 -100639996 - L1M4 LINE L1 -2713 3433 2971 2352 146 55 5 chr12 43642737 43643141 -100639348 - MSTB LTR MaLR -2 424 1 401 333 45 0 chr12 43643389 43643455 -100639034 + L1MC4a LINE L1 5707 5769 -2039 207 0 0 0 chr12 43643455 43643478 -100639011 + (TA)n Simple_repeat Simple_repeat 2 24 0 401 333 45 0 chr12 43643478 43643612 -100638877 + L1MC4a LINE L1 5769 5916 -1892 592 299 91 17 chr12 43643636 43643877 -100638612 + MIR SINE MIR 2 260 -2 2071 129 114 33 chr12 43643961 43644356 -100638133 + MSTA LTR MaLR 2 428 0 1371 166 0 4 chr12 43644359 43644594 -100637895 + MSTA-int LTR MaLR 4 237 -1343 355 247 13 13 chr12 43644775 43644852 -100637637 + L2 LINE L2 3196 3272 0 496 245 168 7 chr12 43644969 43645124 -100637365 + MER5A DNA MER1_type 10 189 0 661 254 74 109 chr12 43645281 43645876 -100636613 + Charlie7 DNA MER1_type 5 578 -2034 * 1910 226 102 18 chr12 43645869 43646538 -100635951 + Charlie7 DNA MER1_type 1764 2488 -124 310 259 65 14 chr12 43646565 43646704 -100635785 - MER104 DNA Tc2 0 180 35 570 274 48 27 chr12 43646728 43646914 -100635575 - MLT1J LTR MaLR -6 505 316 406 271 19 9 chr12 43647002 43647109 -100635380 - MLT1J LTR MaLR -330 181 74 2387 114 16 25 chr12 43647196 43647563 -100634926 + THE1B LTR MaLR 1 364 0 11735 88 13 3 chr12 43647563 43649121 -100633368 + THE1B-int LTR MaLR 1 1574 -6 2291 120 28 19 chr12 43649135 43649494 -100632995 + THE1B LTR MaLR 1 362 -2 1133 241 73 21 chr12 43649611 43649993 -100632496 - LTR16A1 LTR ERVL 0 457 56 188 261 65 0 chr12 43650096 43650142 -100632347 - L2 LINE L2 -2 3270 3222 36 53 0 0 chr12 43650495 43650552 -100631937 + AT_rich Low_complexity Low_complexity 1 57 0 1734 178 18 0 chr12 43650552 43650833 -100631656 - AluJo SINE Alu -25 287 2 385 315 118 66 chr12 43650871 43651532 -100630957 + L2 LINE L2 2521 3232 -40 376 268 106 21 chr12 43651584 43651726 -100630763 - MIR SINE MIR -13 249 96 2274 96 7 0 chr12 43651758 43652061 -100630428 + AluSq SINE Alu 1 305 -8 245 211 138 37 chr12 43652061 43652161 -100630328 - L2 LINE L2 -7 3306 3193 181 314 12 58 chr12 43652422 43652508 -100629981 + L2 LINE L2 3230 3311 -2 200 178 0 44 chr12 43652787 43652832 -100629657 + GA-rich Low_complexity Low_complexity 1 43 0 2015 129 3 3 chr12 43654974 43655287 -100627202 + AluSx SINE Alu 1 312 0 6794 222 44 28 chr12 43655319 43657414 -100625075 + L1ME1 LINE L1 3037 5165 -981 878 180 39 3 chr12 43657420 43657673 -100624816 - MLT1A1 LTR MaLR -2 363 19 2948 227 75 14 chr12 43657686 43658611 -100623878 + L1ME1 LINE L1 5177 6166 0 2234 86 3 55 chr12 43658971 43659297 -100623192 + AluY SINE Alu 1 309 -2 800 264 53 9 chr12 43659461 43659688 -100622801 - MIR SINE MIR -14 248 12 188 131 0 197 chr12 43659945 43660006 -100622483 - L2 LINE L2 0 3313 3265 1612 190 27 35 chr12 43661280 43661648 -100620841 + MLT1A1 LTR MaLR 1 365 0 203 53 26 53 chr12 43662752 43662790 -100619699 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 234 286 0 0 chr12 43662806 43662869 -100619620 - MLT1L LTR MaLR 0 615 553 2494 175 35 2 chr12 43662872 43663323 -100619166 + MLT1C LTR MaLR 2 467 0 181 213 0 21 chr12 43663616 43663663 -100618826 + L2 LINE L2 3217 3262 -51 352 327 32 32 chr12 43663893 43664049 -100618440 - L2 LINE L2 -18 3295 3140 964 227 14 0 chr12 43664249 43664465 -100618024 + L1 LINE L1 4121 4339 -1807 24 0 0 0 chr12 43664583 43664607 -100617882 + AT_rich Low_complexity Low_complexity 1 24 0 5592 169 5 12 chr12 43664637 43666446 -100616043 + L1PA16 LINE L1 4364 6163 -3 324 233 89 133 chr12 43666812 43667246 -100615243 + MLT1H1 LTR MaLR 4 458 -91 27 0 0 0 chr12 43667304 43667331 -100615158 + AT_rich Low_complexity Low_complexity 1 27 0 278 315 27 0 chr12 43667331 43667404 -100615085 - MIR3 SINE MIR -53 155 81 21 0 0 0 chr12 43668190 43668211 -100614278 + AT_rich Low_complexity Low_complexity 1 21 0 281 277 84 12 chr12 43668515 43668598 -100613891 - L2 LINE L2 -31 3241 3153 316 282 115 13 chr12 43668632 43668788 -100613701 + MIR SINE MIR 82 253 -9 184 222 0 0 chr12 43669365 43669401 -100613088 - L2 LINE L2 -10 3303 3268 215 319 145 36 chr12 43669754 43670002 -100612487 + L2 LINE L2 2817 3091 -181 261 0 0 0 chr12 43670190 43670219 -100612270 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 40429 40 22 1 chr12 43670226 43676251 -100606238 - L1PA2 LINE L1 -2 6153 4 311 250 94 6 chr12 43676358 43676538 -100605951 - L1ME4a LINE L1 -3 6118 5923 25 65 0 0 chr12 43676722 43676768 -100605721 + AT_rich Low_complexity Low_complexity 1 46 0 1691 191 15 55 chr12 43676849 43677252 -100605237 + MLT1B LTR MaLR 2 388 -2 301 255 166 35 chr12 43677393 43677538 -100604951 - L1ME4a LINE L1 -4 6117 5954 2004 189 73 15 chr12 43677538 43677992 -100604497 + MLT2B1 LTR ERVL 1 480 -40 228 212 24 12 chr12 43677992 43678077 -100604412 + (TA)n Simple_repeat Simple_repeat 2 87 0 317 306 82 8 chr12 43678103 43678237 -100604252 - L1ME4a LINE L1 -178 5943 5800 695 173 17 22 chr12 43678361 43678540 -100603949 + GA-rich Low_complexity Low_complexity 2 179 0 341 143 0 0 chr12 43678540 43678589 -100603900 + (GGGA)n Simple_repeat Simple_repeat 3 51 0 860 126 25 10 chr12 43678589 43678787 -100603702 + GA-rich Low_complexity Low_complexity 1 201 0 286 292 18 13 chr12 43678916 43679064 -100603425 - MLT1J2 LTR MaLR -251 260 76 2296 85 3 0 chr12 43680546 43680840 -100601649 + AluSc SINE Alu 1 295 -14 608 251 31 58 chr12 43681681 43681872 -100600617 - MIR SINE MIR -13 249 64 791 217 50 0 chr12 43682839 43683037 -100599452 - MER58A DNA MER1_type -16 208 1 184 378 27 0 chr12 43683047 43683121 -100599368 + MIR SINE MIR 55 130 -132 206 319 43 11 chr12 43683282 43683376 -100599113 - MIR SINE MIR -13 249 153 27 29 0 0 chr12 43684295 43684329 -100598160 + AT_rich Low_complexity Low_complexity 1 34 0 282 116 0 0 chr12 43685641 43685684 -100596805 + (A)n Simple_repeat Simple_repeat 1 43 0 1974 144 21 39 chr12 43686173 43686555 -100595934 - THE1C LTR MaLR 0 375 1 402 263 32 55 chr12 43686691 43686993 -100595496 - MLT1I LTR MaLR -3 406 81 1093 209 13 8 chr12 43687274 43687513 -100594976 - MLT1D LTR MaLR -3 502 263 642 217 68 41 chr12 43687745 43687966 -100594523 - MLT1D LTR MaLR -273 232 6 26 30 0 0 chr12 43688243 43688276 -100594213 + AT_rich Low_complexity Low_complexity 1 33 0 1046 155 61 0 chr12 43688279 43688460 -100594029 - L1PA16 LINE L1 -11 6155 5964 342 0 0 0 chr12 43689023 43689061 -100593428 + (TA)n Simple_repeat Simple_repeat 2 39 0 438 69 0 0 chr12 43689114 43689172 -100593317 + (TA)n Simple_repeat Simple_repeat 2 59 0 1124 328 52 17 chr12 43691019 43691485 -100591004 - L2 LINE L2 0 3313 2832 496 198 0 0 chr12 43691490 43691576 -100590913 + 5S rRNA rRNA 5 90 -31 276 233 52 0 chr12 43691580 43691696 -100590793 + L1M4 LINE L1 4303 4424 -1722 382 239 45 0 chr12 43691696 43691784 -100590705 - L2 LINE L2 -475 2839 2748 2335 110 0 0 chr12 43692007 43692317 -100590172 - AluSg SINE Alu 0 310 1 3346 264 163 33 chr12 43692438 43693795 -100588694 - L2 LINE L2 -655 2659 1127 2165 78 3 0 chr12 43695557 43695860 -100586629 + AluY SINE Alu 1 304 0 819 264 19 9 chr12 43695934 43696146 -100586343 - MIR SINE MIR -17 245 32 250 388 12 38 chr12 43697034 43697194 -100585295 - MIR SINE MIR -71 191 36 180 308 134 12 chr12 43697390 43697562 -100584927 - MIR SINE MIR -1 261 69 6399 75 3 5 chr12 43697673 43698634 -100583855 + L1PA8A LINE L1 5154 6113 -18 29 0 0 0 chr12 43698635 43698664 -100583825 + AT_rich Low_complexity Low_complexity 1 29 0 40471 38 22 1 chr12 43699115 43705141 -100577348 - L1PA2 LINE L1 0 6155 1 40319 38 21 1 chr12 43705263 43711304 -100571185 + L1PA2 LINE L1 7 6155 0 382 219 252 0 chr12 43712519 43712638 -100569851 - MLT2B1 LTR ERVL 0 520 371 2152 149 27 65 chr12 43712638 43713081 -100569408 + MSTB LTR MaLR 1 426 0 777 215 14 108 chr12 43713154 43713442 -100569047 - MLT2B1 LTR ERVL -253 267 7 216 384 46 33 chr12 43713977 43714284 -100568205 + L2 LINE L2 1145 1455 -1859 237 344 22 50 chr12 43717179 43717359 -100565130 + MIR SINE MIR 20 194 -68 5690 120 23 8 chr12 43717461 43718576 -100563913 + L1PB2 LINE L1 5016 6148 -3 32 67 0 0 chr12 43718582 43718642 -100563847 + AT_rich Low_complexity Low_complexity 1 60 0 3415 182 106 46 chr12 43719255 43719642 -100562847 - MER21B LTR ERV1 -1 862 500 2056 126 0 7 chr12 43719642 43719954 -100562535 + AluSx SINE Alu 1 310 0 3415 182 106 46 chr12 43719954 43720377 -100562112 - MER21B LTR ERV1 -363 500 2 524 340 68 8 chr12 43720651 43720901 -100561588 - L3 LINE CR1 -3 1574 1310 36 77 0 0 chr12 43721339 43721417 -100561072 + AT_rich Low_complexity Low_complexity 1 78 0 191 250 19 0 chr12 43721493 43721545 -100560944 - MIR SINE MIR -120 142 90 1600 174 33 0 chr12 43722401 43722700 -100559789 + L1MCa LINE L1 20 328 -6098 3411 153 72 55 chr12 43722810 43722857 -100559632 + L1MCa LINE L1 656 701 -5725 989 155 17 17 chr12 43722857 43723038 -100559451 + L1PB3 LINE L1 5973 6153 -1 3411 153 72 55 chr12 43723038 43723783 -100558706 + L1MCa LINE L1 701 1461 -4965 1855 139 168 24 chr12 43724777 43725151 -100557338 + MSTA LTR MaLR 1 428 0 324 309 145 19 chr12 43726897 43727214 -100555275 + L1ME1 LINE L1 5530 5886 -280 1864 218 62 17 chr12 43727265 43727747 -100554742 + L1MB3 LINE L1 4747 5250 -896 2794 127 145 2 chr12 43727748 43728211 -100554278 + MER1A DNA MER1_type 1 529 0 4798 147 46 27 chr12 43728221 43728460 -100554029 + L1MB3 LINE L1 5254 5487 -696 2183 121 0 16 chr12 43728460 43728765 -100553724 + AluSx SINE Alu 1 300 -12 4798 147 46 27 chr12 43728765 43729438 -100553051 + L1MB3 LINE L1 5487 6183 0 394 215 13 0 chr12 43729565 43729644 -100552845 + L2 LINE L2 3234 3313 0 462 366 6 6 chr12 43730109 43730284 -100552205 + MIR3 SINE MIR 31 205 -3 2261 147 12 31 chr12 43730284 43730451 -100552038 + HSMAR2 DNA Mariner 5 174 -1128 2144 103 0 0 chr12 43730451 43730791 -100551698 + AluY SINE Alu 1 340 0 2261 147 12 31 chr12 43730791 43731043 -100551446 + HSMAR2 DNA Mariner 174 417 -885 1670 124 4 0 chr12 43731052 43731301 -100551188 + HSMAR2 DNA Mariner 991 1240 -62 24 77 0 0 chr12 43733047 43733099 -100549390 + AT_rich Low_complexity Low_complexity 1 52 0 363 73 0 0 chr12 43735137 43735192 -100547297 + (TG)n Simple_repeat Simple_repeat 2 56 0 789 213 7 9 chr12 43736251 43736417 -100546072 + L1P4 LINE L1 5511 5675 -486 2808 157 73 58 chr12 43736622 43737280 -100545209 - L1MB1 LINE L1 -44 6124 5457 1604 235 31 49 chr12 43737302 43737665 -100544824 - L1ME1 LINE L1 -5 6161 5809 1996 106 3 18 chr12 43737665 43737980 -100544509 - AluSx SINE Alu 0 313 3 1604 235 31 49 chr12 43737980 43738164 -100544325 - L1ME1 LINE L1 -357 5809 5623 1275 268 70 39 chr12 43738160 43738593 -100543896 - L1MEc LINE L1 -4756 1640 1222 * 426 39 0 0 chr12 43738593 43738645 -100543844 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2227 87 0 0 chr12 43738647 43738923 -100543566 - AluSc SINE Alu -31 278 3 1275 268 70 39 chr12 43738923 43739325 -100543164 - L1MEc LINE L1 -5174 1222 776 239 323 118 0 chr12 43739332 43739425 -100543064 + L2 LINE L2 3163 3266 -6 5586 128 16 0 chr12 43739510 43740176 -100542313 - L1PA16 LINE L1 -9 6157 5488 2137 117 3 3 chr12 43740176 43740467 -100542022 - AluSx SINE Alu -21 291 1 5586 128 16 0 chr12 43740467 43740806 -100541683 - L1PA16 LINE L1 -678 5488 5156 1503 197 10 33 chr12 43740838 43741143 -100541346 - AluJo SINE Alu -14 298 1 397 394 0 18 chr12 43742468 43742638 -100539851 - L2 LINE L2 -219 3053 2887 306 0 0 0 chr12 43743045 43743079 -100539410 + (CA)n Simple_repeat Simple_repeat 2 35 0 37 86 0 0 chr12 43744715 43744808 -100537681 + AT_rich Low_complexity Low_complexity 1 93 0 251 303 0 0 chr12 43745418 43745494 -100536995 - L1MC4 LINE L1 -554 7488 7413 749 261 135 80 chr12 43745558 43745818 -100536671 - L1MC4 LINE L1 -733 7228 6984 2389 53 20 0 chr12 43745818 43745993 -100536496 - AluY SINE Alu -1 310 125 180 0 0 0 chr12 43745993 43746013 -100536476 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2389 53 20 0 chr12 43746013 43746141 -100536348 - AluY SINE Alu -186 125 1 749 261 135 80 chr12 43746141 43746857 -100535632 - L1MC4 LINE L1 -977 6984 6204 305 314 9 0 chr12 43746878 43746983 -100535506 - L1MC4 LINE L1 -1996 5812 5707 328 277 99 0 chr12 43746992 43747093 -100535396 - MIR SINE MIR -73 189 79 23 0 0 0 chr12 43748052 43748075 -100534414 + AT_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr12 43748615 43748643 -100533846 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2118 100 3 48 chr12 43748732 43749043 -100533446 + AluSq SINE Alu 1 297 -16 259 325 44 18 chr12 43749153 43749267 -100533222 - MER5A DNA MER1_type -1 188 72 355 148 33 5 chr12 43749738 43749859 -100532630 - MER53 DNA DNA -3 186 1 1022 213 41 0 chr12 43750381 43750578 -100531911 - MER20 DNA MER1_type -13 206 2 1414 143 112 56 chr12 43750665 43750952 -100531537 - AluJo SINE Alu -9 303 1 31 44 0 0 chr12 43750970 43751015 -100531474 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr12 43751284 43751306 -100531183 + AT_rich Low_complexity Low_complexity 1 22 0 2106 113 75 42 chr12 43751964 43752113 -100530376 + MER51A LTR ERV1 1 144 -490 219 36 0 0 chr12 43752113 43752141 -100530348 + (CA)n Simple_repeat Simple_repeat 1 28 0 2106 113 75 42 chr12 43752141 43752546 -100529943 + MER51A LTR ERV1 144 634 0 610 261 0 0 chr12 43752561 43752722 -100529767 - L1M4 LINE L1 -1015 5131 4971 271 175 70 0 chr12 43752737 43752794 -100529695 + L1M4 LINE L1 5154 5214 -932 805 219 93 36 chr12 43752798 43753077 -100529412 - L1ME3A LINE L1 -273 5880 5586 489 228 105 19 chr12 43753078 43753240 -100529249 + MER63A DNA MER1_type 27 202 -8 879 245 48 14 chr12 43753282 43753576 -100528913 - L1ME3A LINE L1 -560 5585 5282 662 303 73 36 chr12 43753582 43753785 -100528704 - L1ME3A LINE L1 -872 5257 5063 1463 199 0 15 chr12 43753785 43754052 -100528437 + AluJb SINE Alu 1 263 -49 662 303 73 36 chr12 43754052 43754406 -100528083 - L1ME3A LINE L1 -1066 5063 4679 1105 201 55 26 chr12 43754422 43754886 -100527603 + MER39 LTR ERV1 1 516 -26 2734 257 86 54 chr12 43754909 43754962 -100527527 - L1ME3A LINE L1 -1479 4650 4600 253 61 20 20 chr12 43754962 43755011 -100527478 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2734 257 86 54 chr12 43755011 43757004 -100525485 - L1ME3A LINE L1 -1529 4600 2540 3193 137 14 39 chr12 43757016 43757580 -100524909 + MER44D DNA MER2_type 1 605 0 472 313 50 71 chr12 43757580 43757951 -100524538 - L1ME3A LINE L1 -4594 1716 1352 579 292 30 23 chr12 43757958 43758259 -100524230 - L1ME3A LINE L1 -4922 1197 895 317 310 71 82 chr12 43758317 43758598 -100523891 - L1ME3A LINE L1 -5290 829 552 231 304 64 24 chr12 43760134 43760259 -100522230 + L1ME LINE L1 5712 5841 -280 323 323 0 10 chr12 43760578 43760677 -100521812 - L2 LINE L2 0 3313 3216 4681 126 50 70 chr12 43760813 43761696 -100520793 - THE1C-int LTR MaLR -712 868 4 1976 127 67 28 chr12 43761699 43762060 -100520429 - THE1C LTR MaLR 0 375 1 606 258 45 64 chr12 43762074 43762767 -100519722 - L1MC4 LINE L1 -1200 6608 5958 8417 19 1 1 chr12 43763036 43764033 -100518456 + L1P LINE L1 4330 5326 -820 791 185 26 31 chr12 43764040 43764267 -100518222 + Charlie1 DNA MER1_type 2536 2761 0 548 284 27 31 chr12 43764296 43764518 -100517971 + MARNA DNA Mariner 357 577 -9 29 28 0 0 chr12 43765550 43765586 -100516903 + AT_rich Low_complexity Low_complexity 1 36 0 495 87 0 0 chr12 43765688 43765757 -100516732 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 421 280 37 0 chr12 43765757 43765864 -100516625 - L2 LINE L2 -5 3267 3157 298 326 28 14 chr12 43766002 43766146 -100516343 - HAL1 LINE L1 -144 2363 2218 195 354 69 42 chr12 43766220 43766364 -100516125 + MER5A DNA MER1_type 18 165 -24 622 276 130 70 chr12 43766649 43767149 -100515340 - LTR67 LTR ERVL -7 550 21 1650 180 43 53 chr12 43767497 43767638 -100514851 - MLT1B LTR MaLR 0 390 249 2098 148 64 12 chr12 43767638 43768044 -100514445 - MSTA LTR MaLR -1 427 1 1650 180 43 53 chr12 43768044 43768296 -100514193 - MLT1B LTR MaLR -141 249 1 248 261 206 30 chr12 43768541 43768706 -100513783 + MLT1K LTR MaLR 267 460 -128 23 68 0 0 chr12 43769023 43769067 -100513422 + AT_rich Low_complexity Low_complexity 1 44 0 2865 177 82 2 chr12 43769099 43769314 -100513175 + MER6A DNA MER2_type 1 197 -668 285 75 0 0 chr12 43769314 43769354 -100513135 + (TG)n Simple_repeat Simple_repeat 2 41 0 2865 177 82 2 chr12 43769354 43769698 -100512791 + MER6A DNA MER2_type 197 605 0 343 172 0 0 chr12 43770842 43770900 -100511589 - L1PA15-16 LINE L1 -6791 58 1 5711 188 42 21 chr12 43770906 43772644 -100509845 + L1PA15-16 LINE L1 135 1680 -5169 9700 26 2 0 chr12 43772744 43773950 -100508539 - L1P LINE L1 -1295 4851 3644 6738 21 0 0 chr12 43773950 43774752 -100507737 + L1PA4 LINE L1 5367 6168 0 2395 161 25 10 chr12 43774759 43775238 -100507251 - Charlie1 DNA MER1_type -221 2540 2055 602 245 125 5 chr12 43775215 43775399 -100507090 - Charlie1 DNA MER1_type -2555 206 1 * 326 370 103 0 chr12 43775889 43776054 -100506435 - MIR3 SINE MIR -10 198 17 189 0 0 0 chr12 43776923 43776944 -100505545 + (T)n Simple_repeat Simple_repeat 1 21 0 780 219 81 45 chr12 43778168 43778521 -100503968 + MLT1G1 LTR MaLR 92 524 -71 733 302 61 18 chr12 43778528 43778806 -100503683 + ERVL LTR ERVL 4858 5147 -617 1645 168 4 15 chr12 43779986 43780260 -100502229 + AluJb SINE Alu 1 271 -41 589 208 17 17 chr12 43780592 43780770 -100501719 - Charlie2 DNA MER1_type -35 2827 2650 234 158 0 0 chr12 43780854 43780892 -100501597 + HsTC2 DNA Tc2 1301 1338 -560 1503 163 0 74 chr12 43780912 43781195 -100501294 + AluJo SINE Alu 14 275 -37 279 133 0 0 chr12 43781196 43781241 -100501248 + (GGGA)n Simple_repeat Simple_repeat 3 47 0 234 158 0 0 chr12 43781440 43781478 -100501011 + HsTC2 DNA Tc2 1301 1338 -560 1412 173 0 74 chr12 43781498 43781781 -100500708 + AluJo SINE Alu 14 275 -37 279 133 0 0 chr12 43781782 43781827 -100500662 + (GGGA)n Simple_repeat Simple_repeat 3 47 0 321 218 48 40 chr12 43781879 43782003 -100500486 + HsTC2 DNA Tc2 1729 1853 -45 2153 156 11 0 chr12 43782080 43782459 -100500030 - L1MB3 LINE L1 0 6183 5801 728 162 52 113 chr12 43782524 43782637 -100499852 - L1MB3 LINE L1 -387 5796 5702 2098 98 30 0 chr12 43782637 43782933 -100499556 + AluSx SINE Alu 1 305 -7 728 162 52 113 chr12 43782933 43783048 -100499441 - L1MB3 LINE L1 -481 5702 5582 769 209 109 31 chr12 43783048 43783406 -100499083 - Charlie2 DNA MER1_type -289 2573 2188 628 74 21 0 chr12 43783417 43783512 -100498977 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 627 250 11 0 chr12 43784297 43784485 -100498004 - Charlie2 DNA MER1_type -757 2105 1916 379 231 51 77 chr12 43784541 43784697 -100497792 - Charlie2 DNA MER1_type -2457 325 174 231 250 42 0 chr12 43785558 43785630 -100496859 - MLT1J LTR MaLR -8 503 429 384 246 144 46 chr12 43785660 43785855 -100496634 - MLT1J LTR MaLR -148 363 150 21 0 0 0 chr12 43786020 43786041 -100496448 + AT_rich Low_complexity Low_complexity 1 21 0 2215 82 34 0 chr12 43786125 43786419 -100496070 + AluSq SINE Alu 1 304 -9 33 43 0 0 chr12 43787184 43787231 -100495258 + AT_rich Low_complexity Low_complexity 1 47 0 2469 251 57 36 chr12 43787383 43788723 -100493766 + L1ME3A LINE L1 4798 6165 -5 499 208 188 14 chr12 43788730 43788874 -100493615 + MIR SINE MIR 20 188 -74 192 212 0 0 chr12 43791429 43791495 -100490994 + (TTA)n Simple_repeat Simple_repeat 1 66 0 1959 183 59 24 chr12 43793316 43793775 -100488714 + MLT1D LTR MaLR 3 477 -28 4443 79 8 2 chr12 43793777 43794355 -100488134 + L1PA10 LINE L1 5567 6151 -17 261 0 0 0 chr12 43794355 43794384 -100488105 + (TTAAA)n Simple_repeat Simple_repeat 2 30 0 4443 79 8 2 chr12 43794384 43794403 -100488086 + L1PA10 LINE L1 6151 6168 0 11770 194 23 51 chr12 43794559 43798082 -100484407 + L1PA16 LINE L1 1689 4982 -1887 13752 102 2 2 chr12 43798082 43800897 -100481592 - L1PA8 LINE L1 -2 6170 3358 11770 194 23 51 chr12 43800897 43802725 -100479764 + L1PA16 LINE L1 4982 6860 -9 21 57 0 0 chr12 43802970 43803005 -100479484 + AT_rich Low_complexity Low_complexity 1 35 0 1517 213 41 78 chr12 43803062 43803688 -100478801 + MLT1E2 LTR MaLR 65 617 -9 198 0 0 0 chr12 43804113 43804135 -100478354 + (T)n Simple_repeat Simple_repeat 1 22 0 293 367 65 10 chr12 43804146 43804345 -100478144 + MIR SINE MIR 53 262 0 24 32 0 0 chr12 43804515 43804546 -100477943 + AT_rich Low_complexity Low_complexity 1 31 0 1035 118 106 0 chr12 43804860 43805021 -100477468 + L1PB4 LINE L1 5973 6150 -6 872 296 76 20 chr12 43805228 43805674 -100476815 - LTR33 LTR ERVL -48 473 3 2630 23 3 0 chr12 43806199 43806499 -100475990 + AluY SINE Alu 1 301 -10 2720 230 48 32 chr12 43806819 43807880 -100474609 + L1ME3 LINE L1 5081 6156 -6 235 297 31 16 chr12 43809192 43809256 -100473233 - MIR3 SINE MIR -135 73 9 306 277 21 21 chr12 43809875 43809969 -100472520 + MLT2E LTR ERVL 39 132 -496 13224 48 3 1 chr12 43810059 43812476 -100470013 - L1PA5 LINE L1 0 6154 3727 2564 231 47 10 chr12 43812702 43813322 -100469167 + MER82 DNA MER2_type 11 653 0 268 360 23 0 chr12 43813327 43813413 -100469076 - MIR SINE MIR -94 114 27 265 366 56 21 chr12 43815522 43815664 -100466825 + L2 LINE L2 3125 3271 -1 238 266 0 31 chr12 43816697 43816761 -100465728 + C-rich Low_complexity Low_complexity 6 67 0 261 109 0 0 chr12 43816767 43816813 -100465676 + (CA)n Simple_repeat Simple_repeat 1 46 0 1274 220 62 15 chr12 43817365 43817765 -100464724 - LTR52 LTR ERVL 0 421 3 528 205 8 16 chr12 43817767 43817889 -100464600 - LTR52-int LTR ERVL 0 3556 3436 2354 183 20 41 chr12 43817935 43818443 -100464046 - MLT1D LTR MaLR -3 502 6 1312 216 7 30 chr12 43818448 43818744 -100463745 - LTR52-int LTR ERVL -191 3365 3077 2841 96 22 2 chr12 43818744 43819213 -100463276 - MER1A DNA MER1_type 0 529 2 9776 173 45 43 chr12 43819217 43820107 -100462382 - LTR52-int LTR ERVL -475 3081 2194 864 190 18 12 chr12 43820107 43820270 -100462219 - FAM SINE Alu -11 164 1 2583 68 0 3 chr12 43820279 43820589 -100461900 - AluY SINE Alu -2 309 1 9776 173 45 43 chr12 43820589 43821058 -100461431 - LTR52-int LTR ERVL -1369 2187 1720 2464 37 40 3 chr12 43821058 43821358 -100461131 - AluY SINE Alu 0 311 1 9776 173 45 43 chr12 43821358 43823068 -100459421 - LTR52-int LTR ERVL -1836 1720 1 1308 233 35 25 chr12 43823072 43823476 -100459013 - LTR52 LTR ERVL -5 416 9 261 176 77 66 chr12 43825238 43825329 -100457160 - L2 LINE L2 -2 3311 3220 918 195 4 105 chr12 43825413 43825690 -100456799 - L1MC4a LINE L1 -847 6961 6732 9984 216 25 33 chr12 43825700 43826813 -100455676 - L1MA6 LINE L1 0 6300 5179 2345 134 3 24 chr12 43826813 43827185 -100455304 - THE1B LTR MaLR 0 364 1 9984 216 25 33 chr12 43827185 43827210 -100455279 - L1MA6 LINE L1 -1121 5179 5155 2241 113 3 3 chr12 43827210 43827511 -100454978 + AluSp SINE Alu 1 301 -12 9984 216 25 33 chr12 43827511 43830323 -100452166 - L1MA6 LINE L1 -1145 5155 2379 1224 226 40 0 chr12 43830333 43830487 -100452002 - AluJb SINE Alu -25 287 118 207 69 0 0 chr12 43830487 43830516 -100451973 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1224 226 40 0 chr12 43830516 43830613 -100451876 - AluJb SINE Alu -194 118 26 6808 130 20 15 chr12 43830618 43830774 -100451715 - L1M4 LINE L1 -3828 2554 2400 1540 179 67 50 chr12 43830774 43831131 -100451358 + MLT1A1 LTR MaLR 1 363 -2 6808 130 20 15 chr12 43831131 43832254 -100450235 - L1M4 LINE L1 -3982 2400 1269 1565 161 123 0 chr12 43832252 43832544 -100449945 - L1M4 LINE L1 -6056 328 1 * 294 227 235 0 chr12 43832528 43832647 -100449842 - L1MD3 LINE L1 -1211 6784 6638 * 1864 139 60 38 chr12 43832648 43833015 -100449474 - THE1C LTR MaLR 0 375 1 6055 148 55 19 chr12 43833015 43834129 -100448360 - THE1C-int LTR MaLR 0 1580 427 1293 234 49 67 chr12 43834309 43834947 -100447542 - L1MC4a LINE L1 -1225 6583 5958 186 104 0 104 chr12 43834970 43835018 -100447471 - L2 LINE L2 -78 3235 3193 4509 92 29 8 chr12 43835234 43835897 -100446592 - L1PA11 LINE L1 -2 6172 5496 4691 132 21 7 chr12 43835897 43836825 -100445664 + L1P4 LINE L1 4520 5460 -714 618 288 126 43 chr12 43836836 43837162 -100445327 - L2 LINE L2 -15 3298 2946 370 239 131 54 chr12 43837469 43837621 -100444868 + L1ME4a LINE L1 5881 6057 -64 2092 136 0 0 chr12 43837621 43837957 -100444532 - AluSc SINE Alu 0 309 1 370 239 131 54 chr12 43837957 43838026 -100444463 + L1ME4a LINE L1 6057 6119 -2 1586 174 24 40 chr12 43838668 43839047 -100443442 + MLT1A2 LTR MaLR 2 374 0 210 322 11 11 chr12 43839244 43839331 -100443158 - L2 LINE L2 -2 3311 3225 752 150 16 8 chr12 43839503 43839630 -100442859 - AluJb SINE Alu -181 131 4 2586 164 25 50 chr12 43839633 43840189 -100442300 - LTR64 LTR ERVK -16 542 1 241 363 90 52 chr12 43840997 43841440 -100441049 - L2 LINE L2 -2411 903 444 709 338 153 13 chr12 43841549 43842093 -100440396 + L2 LINE L2 1080 1759 -1555 198 103 0 0 chr12 43842093 43842122 -100440367 + (CA)n Simple_repeat Simple_repeat 2 30 0 709 338 153 13 chr12 43842122 43842329 -100440160 + L2 LINE L2 1759 1936 -1378 769 345 134 27 chr12 43842377 43843326 -100439163 + L2 LINE L2 2212 3271 -1 181 206 0 0 chr12 43843848 43843882 -100438607 + L2 LINE L2 3267 3300 -13 238 250 25 0 chr12 43844075 43844155 -100438334 - L1ME3 LINE L1 -3 6159 6078 189 233 274 0 chr12 43845261 43845334 -100437155 - L2 LINE L2 0 3313 3221 498 333 27 37 chr12 43845376 43845670 -100436819 - ERVL LTR ERVL -3984 1780 1490 1547 309 78 17 chr12 43845884 43846589 -100435900 + ERVL LTR ERVL 4166 4913 -851 735 166 18 71 chr12 43846856 43847025 -100435464 + AluJo SINE Alu 1 160 -152 282 87 0 0 chr12 43847246 43847292 -100435197 + (TA)n Simple_repeat Simple_repeat 1 46 0 336 217 267 6 chr12 43847570 43847731 -100434758 + LTR50 LTR ERVL 5 207 -588 267 103 0 0 chr12 43850675 43850714 -100431775 + (GAATG)n Simple_repeat Simple_repeat 2 40 0 185 337 12 12 chr12 43850723 43850806 -100431683 - L3 LINE CR1 -190 1387 1305 409 324 62 18 chr12 43850983 43851208 -100431281 - L3 LINE CR1 -259 1318 1084 2028 109 0 11 chr12 43851616 43851918 -100430571 + AluSx SINE Alu 12 310 0 216 0 0 0 chr12 43852531 43852555 -100429934 + (A)n Simple_repeat Simple_repeat 1 24 0 196 196 250 36 chr12 43853177 43853233 -100429256 - L3 LINE CR1 -480 1097 1030 595 305 64 13 chr12 43854012 43854340 -100428149 + L2 LINE L2 2657 3003 -310 590 192 98 49 chr12 43854348 43854533 -100427956 - MER119 DNA MER1_type -1 582 382 1798 138 11 11 chr12 43854533 43854862 -100427627 + AluSx SINE Alu 3 331 0 590 192 98 49 chr12 43854862 43854899 -100427590 - MER119 DNA MER1_type -201 382 348 928 233 77 39 chr12 43854927 43855366 -100427123 - MLT1C LTR MaLR -11 494 26 752 390 15 85 chr12 43855409 43855737 -100426752 - MER119 DNA MER1_type -232 351 47 524 323 167 4 chr12 43855765 43856028 -100426461 + L2 LINE L2 3008 3313 0 1048 115 49 11 chr12 43856143 43856326 -100426163 - MER30B DNA MER1_type 0 190 1 594 274 39 99 chr12 43857583 43857999 -100424490 + HAL1 LINE L1 946 1336 -1171 26 50 0 0 chr12 43858506 43858546 -100423943 + AT_rich Low_complexity Low_complexity 1 40 0 322 247 82 40 chr12 43858600 43858886 -100423603 + HAL1b LINE L1 757 2439 -68 2348 114 0 0 chr12 43859292 43859591 -100422898 + AluSq SINE Alu 1 299 -14 22 0 0 0 chr12 43862439 43862461 -100420028 + AT_rich Low_complexity Low_complexity 1 22 0 228 127 270 0 chr12 43862564 43862627 -100419862 + MADE1 DNA Mariner 1 80 0 2468 49 0 0 chr12 43862647 43862934 -100419555 - AluY SINE Alu -24 287 1 2140 115 0 3 chr12 43866519 43866807 -100415682 - AluSx SINE Alu -25 287 1 1562 200 55 18 chr12 43866807 43867192 -100415297 + MER31B LTR ERV1 43 441 -25 467 105 21 95 chr12 43867785 43867840 -100414649 + L1ME LINE L1 5546 5593 -573 2056 96 7 33 chr12 43867840 43868141 -100414348 + AluY SINE Alu 1 293 -18 467 105 21 95 chr12 43868141 43868180 -100414309 + L1ME LINE L1 5593 5633 -533 1115 249 36 74 chr12 43868187 43868522 -100413967 - MLT1D LTR MaLR 0 505 196 1982 107 3 13 chr12 43868522 43868822 -100413667 - L1PA12 LINE L1 -14 6154 5858 1115 249 36 74 chr12 43868822 43869011 -100413478 - MLT1D LTR MaLR -309 196 1 2157 196 26 4 chr12 43869011 43869466 -100413023 + L1ME1 LINE L1 5645 6109 -57 590 147 32 0 chr12 43869467 43869562 -100412927 + AluY SINE Alu 1 98 -213 728 117 0 0 chr12 43869571 43869682 -100412807 + MER57B LTR ERV1 324 434 0 890 242 19 5 chr12 43869867 43870078 -100412411 + MER20 DNA MER1_type 4 217 -2 312 306 238 0 chr12 43872254 43872460 -100410029 + LTR50 LTR ERVL 1 255 -540 1087 219 140 0 chr12 43872975 43873326 -100409163 + Charlie5 DNA MER1_type 2223 2622 0 604 316 144 22 chr12 43874165 43874485 -100408004 - L3 LINE CR1 -1 1576 1218 404 331 61 0 chr12 43874763 43874911 -100407578 - L2 LINE L2 -5 3308 3152 447 301 61 12 chr12 43874972 43875135 -100407354 - L3 LINE CR1 -357 1220 1050 2025 140 3 0 chr12 43875238 43875523 -100406966 + AluSx SINE Alu 1 286 -26 1916 136 7 34 chr12 43876168 43876463 -100406026 + AluSx SINE Alu 1 287 -25 21 57 0 0 chr12 43877156 43877191 -100405298 + AT_rich Low_complexity Low_complexity 1 35 0 1065 99 0 28 chr12 43877266 43877448 -100405041 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 1688 202 78 51 chr12 43877767 43878253 -100404236 + MLT1D LTR MaLR 7 505 0 474 332 68 15 chr12 43879562 43879767 -100402722 - MIR SINE MIR 0 262 47 207 0 0 0 chr12 43879771 43879794 -100402695 + (A)n Simple_repeat Simple_repeat 1 23 0 1444 168 46 13 chr12 43880191 43880495 -100401994 + MER46B DNA MER2_type 48 236 0 264 137 0 0 chr12 43880622 43880673 -100401816 + (T)n Simple_repeat Simple_repeat 1 51 0 6521 7 0 0 chr12 43880674 43881434 -100401055 - L1HS LINE L1 0 6155 5396 289 178 11 44 chr12 43881594 43881684 -100400805 + (TA)n Simple_repeat Simple_repeat 2 88 0 1173 258 123 41 chr12 43881708 43882296 -100400193 + L2 LINE L2 2702 3313 0 1262 225 73 40 chr12 43882373 43882821 -100399668 - MLT1C LTR MaLR 0 467 1 590 276 81 17 chr12 43884324 43884498 -100397991 + MIR SINE MIR 5 189 -73 25 0 0 0 chr12 43884565 43884590 -100397899 + AT_rich Low_complexity Low_complexity 1 25 0 310 264 19 9 chr12 43884909 43885015 -100397474 - L1ME LINE L1 -335 5835 5729 1739 170 7 20 chr12 43885408 43885708 -100396781 - AluSx SINE Alu -14 298 3 364 268 16 8 chr12 43885768 43885891 -100396598 + CT-rich Low_complexity Low_complexity 6 129 0 225 0 0 0 chr12 43885993 43886018 -100396471 + (TTG)n Simple_repeat Simple_repeat 2 26 0 208 358 83 8 chr12 43886028 43886148 -100396341 + L2 LINE L2 3184 3312 -1 31 76 0 0 chr12 43886149 43886215 -100396274 + AT_rich Low_complexity Low_complexity 1 66 0 189 329 43 0 chr12 43886816 43886886 -100395603 - MIR3 SINE MIR -12 196 124 606 329 28 19 chr12 43886963 43887179 -100395310 - MIR SINE MIR -32 230 13 277 301 62 9 chr12 43887585 43887698 -100394791 + LTR67 LTR ERVL 422 540 -17 1259 162 102 0 chr12 43889692 43889957 -100392532 - L1MA5 LINE L1 0 6300 6009 2197 88 38 21 chr12 43890035 43890375 -100392114 - L1PB2 LINE L1 -6 6145 5800 207 0 0 0 chr12 43890433 43890456 -100392033 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 6897 65 2 7 chr12 43890501 43891784 -100390705 + L1PA7 LINE L1 4876 6154 0 2005 165 59 28 chr12 43891938 43892441 -100390048 - MLT2A2 LTR ERVL -11 543 5 3278 148 19 54 chr12 43892441 43893075 -100389414 + LTR9 LTR ERV1 1 612 0 21 36 0 0 chr12 43893163 43893191 -100389298 + AT_rich Low_complexity Low_complexity 1 28 0 300 289 24 0 chr12 43893353 43893436 -100389053 - L1M4 LINE L1 -2061 4085 4001 2250 125 0 0 chr12 43893461 43893766 -100388723 + AluSg SINE Alu 1 305 -5 837 237 39 5 chr12 43893884 43894091 -100388398 + MER58A DNA MER1_type 1 214 -10 705 237 88 5 chr12 43894131 43894325 -100388164 + MER63A DNA MER1_type 1 210 0 296 257 124 0 chr12 43894522 43894627 -100387862 - MIR SINE MIR -55 207 90 272 241 0 0 chr12 43895769 43895823 -100386666 + MLT1L LTR MaLR 323 376 -239 716 230 70 25 chr12 43895967 43896167 -100386322 + MIR SINE MIR 54 262 0 202 314 0 0 chr12 43896308 43896359 -100386130 - L2 LINE L2 -16 3297 3247 213 233 46 0 chr12 43898493 43898546 -100383943 + MIR SINE MIR 101 156 -106 2244 142 12 39 chr12 43898595 43898736 -100383753 - MER57A LTR ERV1 -3 400 257 2277 105 7 0 chr12 43898736 43899030 -100383459 + AluSg SINE Alu 1 296 -14 2244 142 12 39 chr12 43899030 43899298 -100383191 - MER57A LTR ERV1 -146 257 2 319 213 93 9 chr12 43899935 43900043 -100382446 + MER112 DNA MER1_type 143 259 -1 6089 93 21 6 chr12 43900561 43902325 -100380164 + L1PA11 LINE L1 4390 6168 -6 419 294 7 44 chr12 43902795 43902931 -100379558 + L2 LINE L2 3137 3267 -5 182 283 19 38 chr12 43903430 43903483 -100379006 + L2 LINE L2 3184 3235 -37 207 0 0 0 chr12 43904387 43904410 -100378079 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2126 132 0 0 chr12 43904412 43904699 -100377790 - AluSx SINE Alu -25 287 1 705 272 63 21 chr12 43904924 43905163 -100377326 + MIR SINE MIR 3 251 -11 546 130 43 0 chr12 43906123 43906238 -100376251 + L1MA8 LINE L1 5213 5332 -814 1970 141 3 7 chr12 43906238 43906536 -100375953 + AluJb SINE Alu 1 297 -15 32 0 0 0 chr12 43906536 43906568 -100375921 + AT_rich Low_complexity Low_complexity 1 32 0 27972 125 27 16 chr12 43906588 43912655 -100369834 + L1PA7 LINE L1 12 6146 -8 655 247 43 56 chr12 43912841 43913072 -100369417 + L2 LINE L2 3085 3312 -1 4670 137 47 36 chr12 43913073 43914033 -100368456 + L1MA8 LINE L1 5317 6286 -5 1703 165 25 0 chr12 43914043 43914328 -100368161 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr12 43914853 43914874 -100367615 + AT_rich Low_complexity Low_complexity 1 21 0 1888 104 87 37 chr12 43915501 43915856 -100366633 - THE1C LTR MaLR -2 373 1 307 161 222 0 chr12 43916077 43916158 -100366331 - L2 LINE L2 -4 3309 3211 374 314 42 0 chr12 43916727 43916845 -100365644 + L3 LINE CR1 1416 1538 -39 224 193 126 126 chr12 43917539 43917583 -100364906 - MIR SINE MIR -70 192 149 2199 90 3 13 chr12 43917583 43917925 -100364564 - AluSq SINE Alu 0 313 1 224 193 126 126 chr12 43917925 43917999 -100364490 - MIR SINE MIR -112 150 74 493 205 0 43 chr12 43918479 43918596 -100363893 - MLT1H LTR MaLR -222 327 216 270 173 19 0 chr12 43918760 43918812 -100363677 - L2 LINE L2 -61 3252 3200 337 284 200 18 chr12 43918812 43919037 -100363452 - L1MC/D LINE L1 -2266 5519 5254 491 251 20 4 chr12 43919322 43919565 -100362924 - L1M4 LINE L1 -2181 3965 3683 847 305 114 22 chr12 43919723 43920375 -100362114 - L1M4 LINE L1 -2679 3467 2760 1897 135 6 68 chr12 43920406 43920732 -100361757 + AluJb SINE Alu 1 306 -6 235 256 85 24 chr12 43920955 43921037 -100361452 - MIR SINE MIR -8 254 168 * 396 297 67 30 chr12 43921013 43921178 -100361311 + L2 LINE L2 2557 2727 -587 285 287 32 11 chr12 43921205 43921299 -100361190 + MER5A DNA MER1_type 93 188 -1 33 56 0 0 chr12 43921352 43921406 -100361083 + AT_rich Low_complexity Low_complexity 1 54 0 444 270 121 5 chr12 43921570 43921786 -100360703 - L1MC4a LINE L1 -297 5824 5603 542 325 83 36 chr12 43921787 43922233 -100360256 - MLT1K LTR MaLR -1 587 121 394 323 61 22 chr12 43922312 43923074 -100359415 - L1MC4a LINE L1 -541 5580 4756 480 336 99 39 chr12 43923267 43923579 -100358910 + L2 LINE L2 2934 3264 -8 515 191 39 182 chr12 43923771 43924002 -100358487 + MIR SINE MIR 65 262 0 239 40 60 20 chr12 43924023 43924073 -100358416 + CT-rich Low_complexity Low_complexity 5 56 0 514 274 12 37 chr12 43925295 43925459 -100357030 - MIR SINE MIR -35 227 68 231 278 56 11 chr12 43925627 43925717 -100356772 + L2 LINE L2 1614 1707 -1607 797 274 77 24 chr12 43925792 43926131 -100356358 + LTR16A1 LTR ERVL 97 453 -4 2927 245 111 29 chr12 43926135 43926673 -100355816 + L2 LINE L2 1731 2223 -1091 2066 138 0 3 chr12 43926673 43926977 -100355512 + AluSg SINE Alu 1 303 -7 2927 245 111 29 chr12 43926977 43927376 -100355113 + L2 LINE L2 2223 2746 -568 541 236 236 5 chr12 43927376 43927579 -100354910 + MIR SINE MIR 1 250 -12 892 286 85 41 chr12 43927633 43928070 -100354419 + L2 LINE L2 2858 3313 0 337 355 104 33 chr12 43928072 43928618 -100353871 - L2 LINE L2 -664 2650 2066 2072 168 49 20 chr12 43929096 43929501 -100352988 - MER47B DNA MER2_type 0 418 2 359 317 63 21 chr12 43930444 43930586 -100351903 - L2 LINE L2 -2 3270 3123 185 306 207 0 chr12 43930659 43930770 -100351719 - L2 LINE L2 -1 3312 3179 514 284 135 56 chr12 43930857 43930884 -100351605 + L2 LINE L2 2833 2856 -457 1514 191 26 66 chr12 43930884 43931262 -100351227 - MLT1A1 LTR MaLR -2 363 1 514 284 135 56 chr12 43931262 43931590 -100350899 + L2 LINE L2 2856 3216 -97 787 271 54 22 chr12 43931606 43932126 -100350363 - L1ME LINE L1 -4899 1362 793 3537 234 111 12 chr12 43932132 43933632 -100348857 + L1ME2 LINE L1 3220 5098 -1066 447 19 0 0 chr12 43933632 43933684 -100348805 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 3537 234 111 12 chr12 43933684 43934495 -100347994 + L1ME2 LINE L1 5098 5828 -336 6276 136 18 20 chr12 43934495 43936063 -100346426 + L1MA3 LINE L1 4741 6305 0 540 204 50 33 chr12 43936125 43936306 -100346183 + L1ME3 LINE L1 5616 5799 -363 4918 157 56 28 chr12 43936313 43937764 -100344725 + L1MA7 LINE L1 4364 5876 -415 549 246 16 0 chr12 43937764 43937890 -100344599 + FLAM_A SINE Alu 2 129 -4 4918 157 56 28 chr12 43937890 43938308 -100344181 + L1MA7 LINE L1 5876 6281 -10 590 257 108 10 chr12 43938399 43938640 -100343849 + L1ME3 LINE L1 5907 6169 -1 1401 212 92 26 chr12 43938800 43939225 -100343264 - MLT1C LTR MaLR -7 460 8 2065 108 0 28 chr12 43939261 43939548 -100342941 + AluSx SINE Alu 1 279 -33 423 0 0 0 chr12 43939548 43939595 -100342894 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 221 354 44 62 chr12 43939708 43939982 -100342507 - L2 LINE L2 -360 2954 2686 417 208 0 0 chr12 43940254 43940331 -100342158 + MER5A DNA MER1_type 33 109 -80 277 226 235 20 chr12 43940256 43940358 -100342131 - MER5A DNA MER1_type -23 166 43 * 596 243 158 7 chr12 43941033 43941185 -100341304 - MER5A DNA MER1_type -6 183 9 23 33 0 0 chr12 43941355 43941385 -100341104 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr12 43942083 43942112 -100340377 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 43942741 43942762 -100339727 + AT_rich Low_complexity Low_complexity 1 21 0 324 287 79 18 chr12 43942834 43942998 -100339491 + MIR SINE MIR 36 209 -53 437 328 52 30 chr12 43944020 43944325 -100338164 + L2 LINE L2 2046 2357 -957 207 0 0 0 chr12 43944330 43944353 -100338136 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1276 147 15 10 chr12 43944356 43944554 -100337935 - AluJo SINE Alu -30 282 84 419 340 101 24 chr12 43944554 43944930 -100337559 + L2 LINE L2 2355 2759 -555 374 350 17 8 chr12 43945255 43945372 -100337117 + L2 LINE L2 3196 3313 0 2561 138 21 26 chr12 43945437 43945864 -100336625 + MSTB LTR MaLR 1 425 -1 242 218 55 0 chr12 43946313 43946368 -100336121 + L2 LINE L2 2997 3054 -218 2485 222 106 17 chr12 43946430 43947560 -100334929 - MER69 DNA AcHobo 0 2526 2 1824 211 17 6 chr12 43948576 43948937 -100333552 - MLT1A1 LTR MaLR 0 365 1 308 326 30 119 chr12 43948951 43949322 -100333167 - L2 LINE L2 0 3272 2935 612 260 89 40 chr12 43949338 43949783 -100332706 + LTR33 LTR ERVL 1 507 -14 1634 182 66 0 chr12 43949799 43950117 -100332372 + MER2 DNA MER2_type 7 345 0 334 385 14 14 chr12 43950151 43950299 -100332190 - L2 LINE L2 -450 2864 2717 428 339 63 58 chr12 43950315 43950953 -100331536 - L2 LINE L2 -1454 1860 1220 661 241 161 89 chr12 43951054 43951071 -100331418 + MLT1K LTR MaLR 199 213 -375 2553 104 10 31 chr12 43951071 43951454 -100331035 + THE1C LTR MaLR 1 375 0 661 241 161 89 chr12 43951454 43951565 -100330924 + MLT1K LTR MaLR 213 315 -273 2138 107 0 27 chr12 43951565 43951864 -100330625 + AluSq SINE Alu 1 291 -22 661 241 161 89 chr12 43951864 43952082 -100330407 + MLT1K LTR MaLR 315 571 -17 327 351 60 30 chr12 43952088 43952256 -100330233 - L2 LINE L2 -2081 1233 1061 28 0 0 0 chr12 43953142 43953170 -100329319 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr12 43953854 43953883 -100328606 + (A)n Simple_repeat Simple_repeat 1 29 0 180 228 70 18 chr12 43953997 43954054 -100328435 + MIR SINE MIR 190 249 -13 225 297 31 0 chr12 43955176 43955240 -100327249 + MIR SINE MIR 48 113 -149 220 123 0 70 chr12 43956243 43956300 -100326189 + (GAAAA)n Simple_repeat Simple_repeat 2 54 0 204 298 83 0 chr12 43958811 43958895 -100323594 - MIR SINE MIR -50 212 122 24 0 0 0 chr12 43958917 43958941 -100323548 + AT_rich Low_complexity Low_complexity 1 24 0 227 330 174 9 chr12 43958941 43959056 -100323433 - MIR SINE MIR -128 134 1 370 234 203 25 chr12 43959165 43959323 -100323166 + MIR SINE MIR 66 251 -11 1430 152 112 85 chr12 43960295 43960742 -100321747 + MLT1C LTR MaLR 5 463 -4 651 286 130 42 chr12 43961848 43962372 -100320117 + L1MEc LINE L1 1881 2450 -3946 258 290 48 0 chr12 43962405 43962529 -100319960 + L1MEc LINE L1 2477 2606 -3609 2592 262 66 43 chr12 43962600 43964197 -100318292 + L1MEc LINE L1 2714 4346 -1869 1850 268 62 10 chr12 43964188 43964815 -100317674 + L1ME3A LINE L1 418 1077 -5644 * 2366 81 0 7 chr12 43964815 43965125 -100317364 + AluSq SINE Alu 1 308 -5 766 215 99 79 chr12 43965169 43965485 -100317004 + L1ME3A LINE L1 1790 2157 -4564 870 178 6 0 chr12 43965485 43965642 -100316847 + L1MB7 LINE L1 6008 6165 -19 766 215 99 79 chr12 43965642 43965750 -100316739 + L1ME3A LINE L1 2157 2261 -4460 485 272 6 6 chr12 43965749 43965922 -100316567 + L1ME3A LINE L1 4944 5116 -1424 * 815 242 130 28 chr12 43966016 43966338 -100316151 + L1ME3A LINE L1 6003 6357 -207 278 295 29 69 chr12 43966393 43966566 -100315923 + L1ME3A LINE L1 6364 6529 -35 35 24 0 0 chr12 43966687 43966729 -100315760 + AT_rich Low_complexity Low_complexity 1 42 0 266 250 10 60 chr12 43967285 43967385 -100315104 + MARNA DNA Mariner 401 495 -91 441 288 0 25 chr12 43967401 43967519 -100314970 - L2 LINE L2 -1 3312 3198 2133 94 44 0 chr12 43968006 43968303 -100314186 + AluSx SINE Alu 1 310 -2 1478 164 22 22 chr12 43968484 43968753 -100313736 - AluJo SINE Alu -43 269 1 21 0 0 0 chr12 43969542 43969563 -100312926 + AT_rich Low_complexity Low_complexity 1 21 0 468 0 0 0 chr12 43969618 43969670 -100312819 + (T)n Simple_repeat Simple_repeat 1 52 0 378 0 0 0 chr12 43969904 43969946 -100312543 + (CA)n Simple_repeat Simple_repeat 2 43 0 2220 140 13 67 chr12 43969946 43970396 -100312093 + MER67D LTR ERV1 1 426 -88 1993 181 7 22 chr12 43970400 43971025 -100311464 + L1M2 LINE L1 5085 5697 -684 2146 111 10 0 chr12 43971025 43971314 -100311175 + AluSx SINE Alu 1 292 -20 287 94 118 59 chr12 43971332 43971417 -100311072 + MLT1B LTR MaLR 95 184 -206 271 77 19 39 chr12 43971421 43971473 -100311016 + (TCTCC)n Simple_repeat Simple_repeat 5 55 0 369 0 0 0 chr12 43971485 43971526 -100310963 + (TC)n Simple_repeat Simple_repeat 1 41 0 297 275 66 0 chr12 43971532 43971623 -100310866 + MLT1B LTR MaLR 192 288 -102 245 243 122 9 chr12 43972251 43972358 -100310131 + L1ME4a LINE L1 5999 6117 -4 331 250 0 0 chr12 43973120 43973200 -100309289 - MER103 DNA DNA -46 120 41 653 261 42 56 chr12 43973957 43974172 -100308317 - MIR SINE MIR -50 212 1 358 260 0 13 chr12 43974176 43974253 -100308236 + L2 LINE L2 3147 3222 -50 1086 151 0 13 chr12 43974287 43974446 -100308043 - FRAM SINE Alu -7 159 3 776 347 55 17 chr12 43974811 43975229 -100307260 + L3 LINE CR1 439 872 -705 575 293 120 34 chr12 43976355 43976772 -100305717 + MLT1J LTR MaLR 1 453 -58 202 250 18 18 chr12 43977123 43977179 -100305310 + L3 LINE CR1 1233 1288 -289 948 177 30 25 chr12 43979314 43979517 -100302972 + AluJo SINE Alu 86 289 -23 2408 202 84 18 chr12 43979659 43980391 -100302098 - L1ME3 LINE L1 -2 6160 5377 267 307 143 14 chr12 43980827 43980967 -100301522 + L3 LINE CR1 1402 1559 -18 431 245 11 0 chr12 43981051 43981145 -100301344 - MIR SINE MIR -16 246 152 2202 210 104 11 chr12 43981146 43981674 -100300815 - MLT1E LTR MaLR 0 593 17 1586 150 96 37 chr12 43981675 43982029 -100300460 - THE1C LTR MaLR 0 375 1 9893 124 8 36 chr12 43982029 43983652 -100298837 - THE1C-int LTR MaLR 0 1580 3 1591 195 80 11 chr12 43983656 43984005 -100298484 - THE1C LTR MaLR -2 373 1 253 258 45 0 chr12 43984005 43984071 -100298418 - MIR SINE MIR -106 156 88 468 305 30 0 chr12 43985017 43985148 -100297341 + MIR SINE MIR 12 146 -116 2053 118 34 0 chr12 43985150 43985472 -100297017 + L1PA16 LINE L1 5825 6157 -9 25 0 0 0 chr12 43985473 43985498 -100296991 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 43986078 43986109 -100296380 + AT_rich Low_complexity Low_complexity 1 31 0 2361 112 0 0 chr12 43986445 43986757 -100295732 - AluSx SINE Alu 0 312 1 1270 217 40 39 chr12 43986932 43987178 -100295311 + L1ME2 LINE L1 5626 5870 -300 1474 131 4 4 chr12 43987178 43987437 -100295052 + L1MA4 LINE L1 6037 6295 -5 1270 217 40 39 chr12 43987437 43987673 -100294816 + L1ME2 LINE L1 5870 6143 -27 23 0 0 0 chr12 43987684 43987707 -100294782 + AT_rich Low_complexity Low_complexity 1 23 0 552 79 0 69 chr12 43987707 43987808 -100294681 + L1PA8 LINE L1 6077 6170 -2 321 125 0 0 chr12 43988150 43988206 -100294283 + (CA)n Simple_repeat Simple_repeat 1 56 0 346 252 74 45 chr12 43988578 43988740 -100293749 + MER5A DNA MER1_type 4 175 -3 815 225 6 22 chr12 43989919 43990097 -100292392 - MER45A DNA AcHobo 0 178 4 946 202 57 26 chr12 43990614 43990945 -100291544 + L1MCa LINE L1 1419 1953 -4654 1645 190 41 19 chr12 43990945 43991308 -100291181 - MLT1A2 LTR MaLR 0 374 4 946 202 57 26 chr12 43991308 43991352 -100291137 + L1MCa LINE L1 1953 1994 -4613 2493 66 0 0 chr12 43991367 43991670 -100290819 + AluY SINE Alu 1 303 -8 290 301 8 90 chr12 43991686 43991819 -100290670 + L2 LINE L2 3192 3313 0 557 263 93 17 chr12 43992192 43992428 -100290061 + L1ME2 LINE L1 5901 6154 -10 * 4287 209 118 38 chr12 43992426 43993432 -100289057 + L1MC4 LINE L1 6354 7511 -531 2095 121 3 10 chr12 43993432 43993781 -100288708 - AluSx SINE Alu 0 312 1 4287 209 118 38 chr12 43993781 43994207 -100288282 + L1MC4 LINE L1 7511 7901 -141 302 169 0 0 chr12 43994247 43994306 -100288183 + L1MA4 LINE L1 6194 6252 -48 475 190 13 69 chr12 43994351 43994517 -100287972 + L1MC4 LINE L1 7902 7995 0 1489 157 0 0 chr12 43994750 43995012 -100287477 - L1MA3 LINE L1 0 6305 6044 336 303 133 0 chr12 43995119 43995284 -100287205 + MIR SINE MIR 19 205 -57 1937 168 0 0 chr12 43995284 43995575 -100286914 + AluJb SINE Alu 1 292 -15 351 0 0 0 chr12 43995575 43995614 -100286875 + (TG)n Simple_repeat Simple_repeat 2 40 0 430 274 114 30 chr12 43995656 43995857 -100286632 - MIR SINE MIR -44 218 1 2301 95 3 13 chr12 43996197 43996513 -100285976 + AluSp SINE Alu 1 313 0 214 158 0 26 chr12 43997053 43997091 -100285398 + GA-rich Low_complexity Low_complexity 3 39 0 321 89 0 0 chr12 43997472 43997517 -100284972 + (CA)n Simple_repeat Simple_repeat 1 45 0 653 307 24 32 chr12 43997913 43998164 -100284325 - MIR SINE MIR 0 262 14 926 299 164 27 chr12 43999392 43999941 -100282548 - L3 LINE CR1 -288 1289 666 488 322 7 7 chr12 44000082 44000225 -100282264 - MER5A DNA MER1_type 0 189 47 351 0 0 0 chr12 44000297 44000336 -100282153 + (TG)n Simple_repeat Simple_repeat 2 40 0 294 87 0 0 chr12 44000337 44000383 -100282106 + (GA)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr12 44000906 44000929 -100281560 + AT_rich Low_complexity Low_complexity 1 23 0 345 281 61 0 chr12 44001447 44001561 -100280928 - MIR SINE MIR -12 250 130 511 261 65 65 chr12 44001667 44002019 -100280470 + LTR16A LTR ERVL 46 397 -53 232 204 20 0 chr12 44002159 44002208 -100280281 + A-rich Low_complexity Low_complexity 3 52 0 376 250 36 27 chr12 44002473 44002585 -100279904 + MER81 DNA DNA 1 113 -1 453 249 45 57 chr12 44005331 44005574 -100276915 + L1ME4a LINE L1 5543 5783 -338 2334 99 0 37 chr12 44005807 44006131 -100276358 + AluSx SINE Alu 1 312 0 737 279 10 10 chr12 44006149 44006357 -100276132 - MER58A DNA MER1_type -16 208 1 198 250 0 33 chr12 44006369 44006429 -100276060 - L2 LINE L2 -64 3249 3192 369 301 0 39 chr12 44006515 44006618 -100275871 - L2 LINE L2 -38 3234 3136 323 234 105 40 chr12 44006649 44006773 -100275716 + L1ME4a LINE L1 5970 6101 -20 922 223 70 77 chr12 44007372 44007657 -100274832 + MER77 LTR ERV1 320 673 -6 201 182 0 0 chr12 44008843 44008876 -100273613 + A-rich Low_complexity Low_complexity 1 33 0 1720 182 36 12 chr12 44009119 44009448 -100273041 - MER58B DNA MER1_type -1 340 4 42446 38 1 3 chr12 44009526 44015696 -100266793 - L1PA3 LINE L1 -3 6152 1 373 317 30 24 chr12 44015890 44015990 -100266499 + MER5A DNA MER1_type 19 122 -67 1494 165 20 30 chr12 44015990 44016293 -100266196 + L1MB5 LINE L1 5875 6174 0 373 317 30 24 chr12 44016293 44016359 -100266130 + MER5A DNA MER1_type 122 186 -3 225 222 133 22 chr12 44017915 44018005 -100264484 - MIR SINE MIR 0 262 163 504 264 147 8 chr12 44018150 44018279 -100264210 - MIR3 SINE MIR -52 156 10 301 251 83 4 chr12 44018351 44018449 -100264040 - MER5A DNA MER1_type -80 109 3 529 193 0 76 chr12 44018545 44018664 -100263825 - MER81 DNA DNA 0 114 5 668 203 11 91 chr12 44018786 44018894 -100263595 + MER45A DNA AcHobo 1 89 -1492 3253 142 13 59 chr12 44018894 44019571 -100262918 - L1MB7 LINE L1 -14 6170 5525 668 203 11 91 chr12 44019571 44019649 -100262840 + MER45A DNA AcHobo 89 172 -6 272 311 104 0 chr12 44019954 44020060 -100262429 - L2 LINE L2 -2 3311 3195 27 0 0 0 chr12 44021083 44021110 -100261379 + AT_rich Low_complexity Low_complexity 1 27 0 862 175 0 0 chr12 44021435 44021572 -100260917 + FRAM SINE Alu 20 156 -20 182 192 172 61 chr12 44021601 44021700 -100260789 + L2 LINE L2 2675 2784 -530 7245 48 2 1 chr12 44021796 44023418 -100259071 + L1PA7 LINE L1 4538 6151 -3 293 373 76 27 chr12 44023994 44024219 -100258270 - L2 LINE L2 -522 2792 2557 455 227 85 57 chr12 44024589 44024765 -100257724 + MIR SINE MIR 4 184 -78 1015 270 162 21 chr12 44025160 44025678 -100256811 - MLT1H1 LTR MaLR 0 595 12 1426 225 147 20 chr12 44025843 44026291 -100256198 + MLT1D LTR MaLR 1 505 0 267 301 181 0 chr12 44026638 44026771 -100255718 + MIR SINE MIR 105 261 -1 1372 147 0 0 chr12 44026935 44027132 -100255357 - AluJb SINE Alu -115 197 1 881 135 25 90 chr12 44027243 44027443 -100255046 + MER5A DNA MER1_type 1 187 -2 1791 25 5 0 chr12 44027630 44027830 -100254659 - L1PA5 LINE L1 -8 6146 5946 186 293 0 0 chr12 44028883 44028924 -100253565 - L2 LINE L2 -11 3261 3221 835 250 86 12 chr12 44028948 44029192 -100253297 + MIR SINE MIR 1 262 0 307 284 0 69 chr12 44029198 44029300 -100253189 + L2 LINE L2 3167 3261 -11 1090 244 146 11 chr12 44029384 44029552 -100252937 - LTR33 LTR ERVL 0 521 377 2668 111 14 8 chr12 44029552 44029921 -100252568 - THE1C LTR MaLR -4 371 1 1090 244 146 11 chr12 44029921 44030108 -100252381 - LTR33 LTR ERVL -144 377 118 * 1189 208 56 10 chr12 44030105 44030393 -100252096 - Charlie4a DNA MER1_type -176 332 32 865 212 14 106 chr12 44030657 44030949 -100251540 - L2 LINE L2 0 3313 3049 1718 145 46 11 chr12 44030981 44031262 -100251227 + AluJb SINE Alu 1 291 -21 2151 110 17 17 chr12 44031262 44031563 -100250926 + AluSp SINE Alu 1 301 -12 1253 83 0 6 chr12 44031573 44031754 -100250735 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 223 245 20 0 chr12 44031918 44031967 -100250522 + MIR3 SINE MIR 111 160 -48 318 26 0 0 chr12 44032620 44032659 -100249830 + (CA)n Simple_repeat Simple_repeat 2 40 0 543 199 15 129 chr12 44033311 44033512 -100248977 - MER5B DNA MER1_type 0 178 1 181 259 19 0 chr12 44033622 44033676 -100248813 + L2 LINE L2 3254 3308 -5 823 172 25 0 chr12 44035398 44035555 -100246934 - MER5A DNA MER1_type -27 162 2 256 332 77 31 chr12 44035911 44036107 -100246382 - L2 LINE L2 -193 3079 2875 2154 121 3 7 chr12 44036415 44036721 -100245768 + AluSx SINE Alu 1 305 -7 2387 86 0 0 chr12 44037857 44038161 -100244328 + AluY SINE Alu 1 304 -7 298 221 228 24 chr12 44038202 44038329 -100244160 - L2 LINE L2 0 3313 3161 490 214 48 24 chr12 44038433 44038559 -100243930 + MER5B DNA MER1_type 50 178 0 532 262 8 0 chr12 44038614 44038740 -100243749 - L2 LINE L2 0 3313 3187 436 208 169 32 chr12 44038759 44038913 -100243576 - MIR SINE MIR -70 192 18 592 137 0 69 chr12 44039397 44039499 -100242990 + MLT1B LTR MaLR 1 95 -295 235 89 54 107 chr12 44039497 44039553 -100242936 - MLT1B LTR MaLR -276 114 62 * 1786 117 7 43 chr12 44039579 44039879 -100242610 + MLT1B LTR MaLR 102 390 0 2602 170 19 27 chr12 44040180 44040692 -100241797 + L1MA4A LINE L1 5615 6122 -181 376 253 0 0 chr12 44040697 44040788 -100241701 + L1MA4A LINE L1 6190 6280 -23 201 156 0 0 chr12 44040862 44040894 -100241595 + MIR SINE MIR 67 98 -164 296 214 43 14 chr12 44041183 44041253 -100241236 - MIR SINE MIR 0 262 191 519 138 0 0 chr12 44041258 44041338 -100241151 + L1M2 LINE L1 5695 5774 -526 387 280 112 24 chr12 44041341 44041466 -100241023 - MIR SINE MIR -98 164 29 380 252 67 52 chr12 44041540 44041675 -100240814 - MIR3 SINE MIR -57 151 15 213 39 0 0 chr12 44041837 44041863 -100240626 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 458 309 80 36 chr12 44041945 44042194 -100240295 - MIR SINE MIR 0 262 3 1568 124 4 25 chr12 44042250 44042492 -100239997 - AluSg/x SINE Alu -4 308 72 569 96 0 0 chr12 44042495 44042568 -100239921 + AluS SINE Alu 5 77 -236 419 344 25 6 chr12 44042700 44042863 -100239626 + MER5A DNA MER1_type 24 189 0 210 211 0 0 chr12 44043531 44043569 -100238920 - MIR SINE MIR -5 257 220 1384 189 65 18 chr12 44044051 44044326 -100238163 + AluJo SINE Alu 1 288 -24 2398 62 0 0 chr12 44044395 44044684 -100237805 + AluY SINE Alu 1 289 -22 538 268 35 14 chr12 44045690 44045832 -100236657 + MIR SINE MIR 29 173 -89 2303 101 0 0 chr12 44045964 44046261 -100236228 + AluSq SINE Alu 1 297 -16 923 269 140 49 chr12 44046914 44047386 -100235103 - MLT1H1 LTR MaLR 0 555 41 221 350 117 20 chr12 44047515 44047712 -100234777 + MIR SINE MIR 2 217 -45 1753 131 29 4 chr12 44048025 44048335 -100234154 - AluSx SINE Alu 0 317 1 2043 128 0 18 chr12 44049072 44049354 -100233135 - AluSx SINE Alu -35 277 1 1197 145 5 33 chr12 44051854 44052068 -100230421 - AluJo SINE Alu -15 297 90 1627 128 180 80 chr12 44052993 44053034 -100229455 - MSTA LTR MaLR 0 428 393 2068 120 0 71 chr12 44053034 44053360 -100229129 + AluSx SINE Alu 1 303 -9 1627 128 180 80 chr12 44053360 44053542 -100228947 - MSTA LTR MaLR -35 393 231 2492 75 3 0 chr12 44053542 44053849 -100228640 - AluY SINE Alu -3 308 1 1627 128 180 80 chr12 44053849 44054013 -100228476 - MSTA LTR MaLR -197 231 1 368 302 56 8 chr12 44054858 44054984 -100227505 - L2 LINE L2 -1 3271 3140 310 315 77 7 chr12 44055220 44055363 -100227126 + MIR3 SINE MIR 31 183 -25 21 0 0 0 chr12 44057497 44057518 -100224971 + AT_rich Low_complexity Low_complexity 1 21 0 783 207 0 15 chr12 44058232 44058367 -100224122 + FLAM_A SINE Alu 1 133 0 2023 116 0 62 chr12 44058554 44058874 -100223615 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr12 44059177 44059206 -100223283 + AT_rich Low_complexity Low_complexity 1 29 0 261 294 35 0 chr12 44059327 44059412 -100223077 + MIR3 SINE MIR 100 187 -21 266 289 230 7 chr12 44059745 44059880 -100222609 + L1MC4a LINE L1 5496 5660 -2148 2091 107 126 27 chr12 44059903 44060276 -100222213 - MSTA LTR MaLR -18 410 1 404 238 66 40 chr12 44060321 44060472 -100222017 + LTR50 LTR ERVL 1 155 -640 287 297 25 8 chr12 44060766 44060884 -100221605 + LTR33A LTR ERVL 404 523 0 625 264 43 22 chr12 44060884 44061115 -100221374 + L1MC4a LINE L1 5689 5924 -1884 244 301 41 0 chr12 44062082 44062155 -100220334 - MLT2E LTR ERVL -2 626 551 903 142 34 0 chr12 44062185 44062333 -100220156 - MER30 DNA MER1_type -77 153 1 618 215 49 21 chr12 44062459 44062603 -100219886 - MLT2E LTR ERVL -452 176 29 1687 158 9 48 chr12 44062678 44062994 -100219495 + AluJb SINE Alu 3 306 -6 1999 266 172 4 chr12 44062999 44063709 -100218780 + L2 LINE L2 1964 2792 -522 288 333 75 13 chr12 44063691 44063850 -100218639 + L2 LINE L2 3011 3179 -134 * 1459 201 44 10 chr12 44064316 44064441 -100218048 + AluJb SINE Alu 1 120 -192 369 0 0 0 chr12 44064441 44064482 -100218007 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1459 201 44 10 chr12 44064482 44064650 -100217839 + AluJb SINE Alu 120 304 -8 375 228 69 41 chr12 44064800 44064945 -100217544 + MIR3 SINE MIR 19 167 -41 1886 154 0 3 chr12 44065189 44065511 -100216978 - AluSx SINE Alu 0 321 1 295 216 69 39 chr12 44065867 44065969 -100216520 + MER94 DNA DNA 3 107 -27 264 135 0 0 chr12 44066276 44066313 -100216176 + FLAM_A SINE Alu 1 37 -102 433 132 0 15 chr12 44066734 44066802 -100215687 + AluS SINE Alu 2 68 -245 664 246 110 4 chr12 44066825 44067061 -100215428 - MIR SINE MIR -1 261 1 1945 118 6 70 chr12 44067428 44067743 -100214746 + AluSx SINE Alu 1 295 -17 1315 189 16 12 chr12 44070174 44070423 -100212066 - MIR SINE MIR 0 262 13 333 158 24 37 chr12 44070699 44070781 -100211708 + L1MB3 LINE L1 5418 5498 -682 584 234 0 0 chr12 44070793 44070900 -100211589 + FLAM_A SINE Alu 16 122 -20 4357 130 37 3 chr12 44070912 44071591 -100210898 + L1MB3 LINE L1 5473 6174 -9 400 268 148 16 chr12 44071671 44071854 -100210635 - L1MC4a LINE L1 -1901 5907 5701 354 207 92 11 chr12 44071972 44072059 -100210430 - MLT1I LTR MaLR -38 371 278 224 290 32 0 chr12 44072328 44072390 -100210099 + L2 LINE L2 3204 3267 -5 7328 118 19 2 chr12 44072485 44074355 -100208134 + L1MA3 LINE L1 4404 6305 0 210 342 25 0 chr12 44075035 44075114 -100207375 + L2 LINE L2 3191 3271 -1 2092 173 83 130 chr12 44075239 44076002 -100206487 - LTR8A LTR ERV1 0 727 1 566 257 81 40 chr12 44076365 44076587 -100205902 + L3 LINE CR1 1238 1468 -109 2600 46 0 0 chr12 44076630 44076932 -100205557 + AluY SINE Alu 1 302 -9 1459 167 65 22 chr12 44077705 44077980 -100204509 + AluJo SINE Alu 1 287 -25 50 0 0 0 chr12 44077980 44078030 -100204459 + AT_rich Low_complexity Low_complexity 1 50 0 6418 20 0 0 chr12 44078248 44078986 -100203503 - L1PA2 LINE L1 -1 6154 5417 270 73 0 0 chr12 44079148 44079189 -100203300 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 26 30 0 0 chr12 44079426 44079459 -100203030 + AT_rich Low_complexity Low_complexity 1 33 0 41997 41 1 2 chr12 44079631 44085800 -100196689 - L1PA3 LINE L1 0 6155 7 403 207 72 8 chr12 44086038 44086164 -100196325 + MIR SINE MIR 43 176 -63 * 428 300 80 32 chr12 44086162 44086412 -100196077 - L2 LINE L2 -1 3312 3051 698 284 45 45 chr12 44086571 44086884 -100195605 + L1MEd LINE L1 22 334 -5785 1322 158 65 72 chr12 44086901 44087193 -100195296 + AluJo SINE Alu 7 296 -16 547 195 59 35 chr12 44087237 44087571 -100194918 + L1MEd LINE L1 388 836 -5283 910 97 179 0 chr12 44087711 44087845 -100194644 + AluSc SINE Alu 1 158 -151 210 91 0 0 chr12 44087861 44087894 -100194595 + (TA)n Simple_repeat Simple_repeat 2 34 0 313 315 0 0 chr12 44087894 44087986 -100194503 - L1MC4 LINE L1 -1339 6703 6612 808 130 0 48 chr12 44088282 44088428 -100194061 - FRAM SINE Alu -37 139 1 2164 110 66 87 chr12 44088522 44088959 -100193530 + MSTA LTR MaLR 1 428 0 588 204 0 0 chr12 44091493 44091596 -100190893 + AluJb SINE Alu 1 103 -209 22 35 0 0 chr12 44091602 44091631 -100190858 + AT_rich Low_complexity Low_complexity 1 29 0 1030 116 32 16 chr12 44091728 44091917 -100190572 - L1MB2 LINE L1 0 6171 5980 856 167 68 0 chr12 44092204 44092366 -100190123 - AluJb SINE Alu -3 309 137 919 209 34 5 chr12 44092394 44092600 -100189889 + MLT2E LTR ERVL 415 626 -2 772 210 20 109 chr12 44092605 44093013 -100189476 - MER34 LTR ERV1 -1 541 177 1175 144 28 11 chr12 44093040 44093221 -100189268 + AluJo SINE Alu 3 186 -126 1108 29 0 0 chr12 44093251 44093388 -100189101 - L1PA4 LINE L1 -180 5975 5839 727 85 9 0 chr12 44093388 44093492 -100188997 + L1PA4 LINE L1 6047 6153 -2 561 170 35 26 chr12 44093496 44093664 -100188825 - MER34B LTR ERV1 -357 185 4 277 211 92 18 chr12 44093671 44093780 -100188709 + L1ME4a LINE L1 5949 6065 -56 25 0 0 0 chr12 44094401 44094426 -100188063 + AT_rich Low_complexity Low_complexity 1 25 0 983 168 102 31 chr12 44094654 44094850 -100187639 + AluJb SINE Alu 84 293 -19 28 0 0 0 chr12 44094871 44094899 -100187590 + AT_rich Low_complexity Low_complexity 1 28 0 2323 105 0 7 chr12 44095049 44095355 -100187134 + AluSx SINE Alu 1 304 -8 387 335 77 12 chr12 44095366 44095536 -100186953 + MIR SINE MIR 57 237 -25 239 299 0 0 chr12 44095772 44095839 -100186650 + HAL1 LINE L1 10 76 -2431 1881 177 26 16 chr12 44095839 44096304 -100186185 + MLT2B1 LTR ERVL 1 515 0 2299 255 119 72 chr12 44096318 44097303 -100185186 + HAL1 LINE L1 94 1173 -1334 2360 113 0 0 chr12 44097303 44097613 -100184876 + AluSx SINE Alu 1 310 -2 2299 255 119 72 chr12 44097613 44098119 -100184370 + HAL1 LINE L1 1173 1654 -853 294 164 0 0 chr12 44098148 44098203 -100184286 + CT-rich Low_complexity Low_complexity 3 57 0 804 319 74 13 chr12 44098205 44098597 -100183892 + MLT1J LTR MaLR 36 451 -60 2008 144 0 3 chr12 44098843 44099135 -100183354 + AluJb SINE Alu 1 291 -21 42036 40 3 1 chr12 44099144 44105283 -100177206 + L1PA4 LINE L1 4 6152 -3 26 30 0 0 chr12 44105283 44105316 -100177173 + AT_rich Low_complexity Low_complexity 1 33 0 2034 113 66 36 chr12 44105635 44105999 -100176490 - THE1C LTR MaLR 0 375 1 313 134 45 0 chr12 44106796 44106863 -100175626 + MLT1J LTR MaLR 439 508 -3 2345 70 7 3 chr12 44107285 44107586 -100174903 - AluY SINE Alu -9 302 1 309 249 34 124 chr12 44108220 44108397 -100174092 - L2 LINE L2 -52 3261 3101 1105 233 113 55 chr12 44108447 44108944 -100173545 - MLT1H1 LTR MaLR 0 577 20 2705 251 241 41 chr12 44108958 44109505 -100172984 - L2 LINE L2 -266 3047 2611 2126 106 27 7 chr12 44109505 44109806 -100172683 + AluSx SINE Alu 1 307 -5 2705 251 241 41 chr12 44109806 44110728 -100171761 - L2 LINE L2 -702 2611 1271 1942 116 52 68 chr12 44110728 44111109 -100171380 + THE1C LTR MaLR 1 375 0 2705 251 241 41 chr12 44111109 44111158 -100171331 - L2 LINE L2 -2042 1271 1233 3088 143 45 14 chr12 44111167 44111996 -100170493 + MER49 LTR ERV1 16 908 -15 1982 224 102 37 chr12 44112019 44112207 -100170282 - L2 LINE L2 -2075 1239 1065 1821 145 0 43 chr12 44112207 44112511 -100169978 - AluJb SINE Alu -19 293 3 1982 224 102 37 chr12 44112511 44112920 -100169569 - L2 LINE L2 -2249 1065 603 468 293 27 32 chr12 44113350 44113538 -100168951 - L2 LINE L2 -563 2751 2565 2650 77 26 0 chr12 44113641 44114020 -100168469 - L1PA7 LINE L1 -209 5945 5557 1371 80 0 10 chr12 44114007 44114206 -100168283 + L1PA7 LINE L1 5938 6134 -20 * 258 356 46 0 chr12 44114225 44114312 -100168177 + L2 LINE L2 2961 3051 -221 891 189 26 83 chr12 44114406 44114634 -100167855 - MER20 DNA MER1_type -4 215 1 234 257 119 64 chr12 44115038 44115147 -100167342 - L2 LINE L2 -14 3299 3185 643 196 146 10 chr12 44115151 44115350 -100167139 + MER33 DNA MER1_type 8 233 -91 21 36 0 0 chr12 44115359 44115387 -100167102 + AT_rich Low_complexity Low_complexity 1 28 0 412 47 16 16 chr12 44115485 44115549 -100166940 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 1630 158 38 8 chr12 44115553 44115819 -100166670 - AluJo SINE Alu -30 282 9 474 39 51 51 chr12 44115939 44116017 -100166472 - MADE1 DNA Mariner -1 79 2 1884 136 0 7 chr12 44116764 44117050 -100165439 - AluJb SINE Alu -28 284 1 2146 109 7 0 chr12 44117060 44117345 -100165144 - AluSc SINE Alu -22 287 1 356 340 75 0 chr12 44117782 44117941 -100164548 + MLT1L LTR MaLR 357 527 -88 1968 148 3 7 chr12 44118644 44118942 -100163547 - AluJo SINE Alu -15 297 1 24 0 0 0 chr12 44119337 44119361 -100163128 + AT_rich Low_complexity Low_complexity 1 24 0 209 267 167 11 chr12 44119913 44120003 -100162486 + MER5A DNA MER1_type 1 104 -85 238 294 7 42 chr12 44120338 44120526 -100161963 + CT-rich Low_complexity Low_complexity 1 181 0 242 211 39 0 chr12 44121752 44121804 -100160685 - MER5A DNA MER1_type 0 189 136 28 0 0 0 chr12 44124118 44124146 -100158343 + AT_rich Low_complexity Low_complexity 1 28 0 527 266 52 73 chr12 44125363 44125411 -100157078 - MIR SINE MIR -20 242 194 1998 46 0 0 chr12 44125411 44125651 -100156838 + L1PA5 LINE L1 5906 6145 -9 527 266 52 73 chr12 44125651 44125835 -100156654 - MIR SINE MIR -68 194 15 326 304 72 14 chr12 44126516 44126654 -100155835 + L2 LINE L2 2905 3050 -222 24 32 0 0 chr12 44127434 44127465 -100155024 + AT_rich Low_complexity Low_complexity 1 31 0 353 289 84 74 chr12 44128009 44128293 -100154196 + L2 LINE L2 2836 3122 -150 767 286 97 69 chr12 44128830 44128924 -100153565 + L1M4 LINE L1 4369 4459 -1687 1466 101 60 5 chr12 44128924 44129142 -100153347 + MER30 DNA MER1_type 1 230 0 767 286 97 69 chr12 44129142 44129268 -100153221 + L1M4 LINE L1 4459 4580 -1566 2215 96 0 10 chr12 44129268 44129561 -100152928 - AluSq SINE Alu -23 290 1 767 286 97 69 chr12 44129561 44129838 -100152651 + L1M4 LINE L1 4580 4891 -1255 652 119 0 175 chr12 44129838 44129998 -100152491 - FLAM_C SINE Alu -1 132 1 767 286 97 69 chr12 44129998 44130139 -100152350 + L1M4 LINE L1 4891 5027 -1119 1759 178 34 3 chr12 44130239 44130531 -100151958 + AluJb SINE Alu 1 301 -11 1044 197 10 14 chr12 44130536 44130744 -100151745 + AluJo SINE Alu 1 207 -105 30477 43 4 4 chr12 44130866 44134843 -100147646 - L1P LINE L1 -2165 3981 3 991 178 0 35 chr12 44135272 44135446 -100147043 + AluJb SINE Alu 135 302 -10 180 0 0 0 chr12 44136445 44136465 -100146024 + (T)n Simple_repeat Simple_repeat 1 20 0 462 279 19 39 chr12 44137495 44137649 -100144840 - L2 LINE L2 -2 3311 3161 2031 131 3 3 chr12 44138289 44138580 -100143909 - AluSx SINE Alu -21 291 1 1592 131 0 0 chr12 44138786 44139008 -100143481 - AluSx SINE Alu -28 284 63 1163 223 65 53 chr12 44139125 44139537 -100142952 + L1ME1 LINE L1 5750 6166 0 799 149 51 46 chr12 44139586 44139761 -100142728 + FRAM SINE Alu 1 40 0 209 218 269 13 chr12 44139783 44139861 -100142628 + MER5B DNA MER1_type 81 178 0 355 213 75 0 chr12 44139861 44139955 -100142534 + L2 LINE L2 2215 2315 -999 1474 157 5 0 chr12 44139955 44140178 -100142311 + AluSx SINE Alu 1 224 -88 486 228 23 116 chr12 44140417 44140720 -100141769 + L1MC4 LINE L1 7768 8042 0 326 123 18 0 chr12 44142072 44142129 -100140360 + (TA)n Simple_repeat Simple_repeat 2 59 0 1788 158 14 7 chr12 44142883 44143174 -100139315 + AluJb SINE Alu 2 294 -18 25 83 0 0 chr12 44143268 44143328 -100139161 + AT_rich Low_complexity Low_complexity 1 60 0 386 221 110 73 chr12 44143528 44143782 -100138707 + MER5C DNA MER1_type 1 324 0 22 0 0 0 chr12 44143791 44143813 -100138676 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr12 44144218 44144272 -100138217 + AT_rich Low_complexity Low_complexity 1 54 0 384 262 85 58 chr12 44144486 44144727 -100137762 + L1M4 LINE L1 5242 5492 -682 2145 121 0 3 chr12 44144887 44145184 -100137305 - AluSx SINE Alu -16 296 1 266 170 0 0 chr12 44145186 44145233 -100137256 - AluSg/x SINE Alu -170 130 84 983 120 0 0 chr12 44145233 44145358 -100137131 - AluSq/x SINE Alu -188 125 1 1995 165 0 0 chr12 44145431 44145740 -100136749 - AluJb SINE Alu -3 309 1 22 0 0 0 chr12 44145745 44145767 -100136722 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 44145976 44146002 -100136487 + AT_rich Low_complexity Low_complexity 1 26 0 217 132 0 0 chr12 44146635 44146673 -100135816 + (T)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr12 44146715 44146743 -100135746 + AT_rich Low_complexity Low_complexity 1 28 0 800 164 0 8 chr12 44146743 44146877 -100135612 - FLAM_C SINE Alu 0 133 1 2340 75 3 19 chr12 44147122 44147430 -100135059 + AluSc SINE Alu 1 303 -6 258 321 0 12 chr12 44148446 44148527 -100133962 + L2 LINE L2 3193 3272 0 421 336 37 37 chr12 44148852 44149096 -100133393 + L2 LINE L2 2631 2874 -440 203 313 30 0 chr12 44149359 44149426 -100133063 + L2 LINE L2 3242 3310 -3 509 290 74 3 chr12 44149728 44149928 -100132561 - MIR SINE MIR -45 217 6 370 294 81 113 chr12 44150073 44150691 -100131798 - L1M2 LINE L1 -5467 1382 785 222 91 0 0 chr12 44150996 44151029 -100131460 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr12 44151953 44151981 -100130508 + AT_rich Low_complexity Low_complexity 1 28 0 1571 167 27 50 chr12 44152377 44152677 -100129812 + AluJo SINE Alu 7 299 -13 342 292 55 31 chr12 44153178 44153315 -100129174 + MIR SINE MIR 14 151 -65 1076 169 55 0 chr12 44153321 44153557 -100128932 - L1MA9 LINE L1 0 6312 6064 270 336 16 8 chr12 44153790 44153912 -100128577 - MLT1K LTR MaLR -325 263 141 353 322 33 16 chr12 44154640 44154761 -100127728 + MER5A DNA MER1_type 61 183 -6 2436 81 0 0 chr12 44154817 44155115 -100127374 - AluY SINE Alu -13 298 1 2178 125 51 14 chr12 44155320 44155672 -100126817 - MLT1A1 LTR MaLR 0 365 1 24 53 0 0 chr12 44155695 44155733 -100126756 + AT_rich Low_complexity Low_complexity 1 38 0 1083 146 6 12 chr12 44155800 44155964 -100126525 - AluJb SINE Alu -13 299 137 1881 99 33 59 chr12 44155964 44156267 -100126222 - AluSx SINE Alu -17 295 1 279 79 0 0 chr12 44156694 44156732 -100125757 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1927 123 18 0 chr12 44156753 44157029 -100125460 - AluSx SINE Alu -31 281 1 1993 55 0 32 chr12 44157236 44157489 -100125000 - AluY SINE Alu -11 300 56 2213 110 13 0 chr12 44157489 44157788 -100124701 - AluY SINE Alu -8 303 1 436 134 0 0 chr12 44157788 44157855 -100124634 - AluSq/x SINE Alu -177 136 70 1426 160 47 23 chr12 44157949 44158205 -100124284 + AluJb SINE Alu 3 264 -48 384 88 0 0 chr12 44158206 44158263 -100124226 + (TATG)n Simple_repeat Simple_repeat 2 58 0 353 202 21 64 chr12 44158330 44158424 -100124065 - L1MD2 LINE L1 -239 6120 6031 1864 157 65 19 chr12 44159161 44159574 -100122915 - L1MB7 LINE L1 -135 6049 5618 392 122 27 14 chr12 44159554 44159628 -100122861 + L1MB7 LINE L1 6059 6133 -51 * 566 306 45 30 chr12 44159660 44159925 -100122564 - MLT1I LTR MaLR -39 370 102 1208 161 24 15 chr12 44160491 44160696 -100121793 + AluJo SINE Alu 87 293 -19 2012 145 0 19 chr12 44160783 44161101 -100121388 - AluJo SINE Alu 0 312 1 580 304 117 38 chr12 44161447 44161712 -100120777 - MLT1G3 LTR MaLR -228 304 62 198 0 0 0 chr12 44161712 44161734 -100120755 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 1956 136 18 0 chr12 44161734 44162014 -100120475 - AluSx SINE Alu -26 286 2 580 304 117 38 chr12 44162014 44162069 -100120420 - MLT1G3 LTR MaLR -469 63 1 257 320 37 34 chr12 44162701 44162869 -100119620 - MER5A DNA MER1_type 0 178 4 32 26 0 0 chr12 44162927 44162966 -100119523 + AT_rich Low_complexity Low_complexity 1 39 0 299 272 37 25 chr12 44163512 44163593 -100118896 - MER5B DNA MER1_type -30 148 67 1629 188 13 17 chr12 44164046 44164344 -100118145 - AluJo SINE Alu -12 300 4 1437 152 32 24 chr12 44164346 44164679 -100117810 - L1P1 LINE L1 -464 5691 5352 228 260 73 21 chr12 44165766 44165862 -100116627 + MIR3 SINE MIR 87 187 -21 1390 144 130 40 chr12 44166040 44166317 -100116172 + AluJo SINE Alu 1 302 -10 215 395 151 26 chr12 44166335 44166606 -100115883 - L2 LINE L2 -36 3236 2932 1360 157 48 59 chr12 44166620 44166957 -100115532 - L1MA7 LINE L1 -1 6290 5958 1869 128 55 0 chr12 44168116 44168405 -100114084 - AluSq SINE Alu -8 305 1 308 174 0 0 chr12 44168496 44168542 -100113947 - Alu SINE Alu -255 47 2 2158 103 0 3 chr12 44168652 44168942 -100113547 + AluSx SINE Alu 12 300 -12 1619 180 6 38 chr12 44168966 44169283 -100113206 - AluJo SINE Alu -5 307 1 243 320 234 3 chr12 44169373 44169745 -100112744 + L2 LINE L2 1932 2389 -925 953 236 124 58 chr12 44171525 44172406 -100110083 - L1MC4 LINE L1 0 8042 6958 2163 128 7 0 chr12 44172406 44172703 -100109786 - AluSx SINE Alu -13 299 1 953 236 124 58 chr12 44172703 44172792 -100109697 - L1MC4 LINE L1 -1084 6958 6876 1423 181 40 11 chr12 44173382 44173659 -100108830 - AluJo SINE Alu -27 285 1 2000 147 0 16 chr12 44174173 44174486 -100108003 + AluJo SINE Alu 1 308 -4 725 194 75 5 chr12 44174920 44175106 -100107383 + MER105 DNA DNA 5 203 -1 1626 175 30 0 chr12 44175198 44175466 -100107023 - AluJo SINE Alu -19 293 18 208 227 0 27 chr12 44175506 44175581 -100106908 + CT-rich Low_complexity Low_complexity 4 76 0 892 206 18 0 chr12 44175585 44175750 -100106739 - FRAM SINE Alu -9 167 1 1592 151 87 36 chr12 44176078 44176435 -100106054 - THE1C LTR MaLR 0 375 1 1281 265 92 0 chr12 44176816 44177209 -100105280 - MLT1J LTR MaLR 0 511 83 8433 32 6 1 chr12 44177720 44179514 -100102975 - L1PA4 LINE L1 -3 6152 4354 5149 244 99 35 chr12 44179635 44181742 -100100747 - L1MC4a LINE L1 -263 7545 5304 498 219 44 0 chr12 44181738 44181852 -100100637 - L1MB7 LINE L1 0 6184 6066 * 1412 212 7 10 chr12 44182035 44182332 -100100157 - AluJo SINE Alu -16 296 1 1875 158 10 3 chr12 44182337 44182635 -100099854 - AluY SINE Alu -11 300 1 219 294 76 17 chr12 44182812 44182931 -100099558 - MIR3 SINE MIR -21 187 62 1526 152 32 24 chr12 44183994 44184327 -100098162 + L1M1 LINE L1 5352 5691 -464 1600 188 13 17 chr12 44184329 44184627 -100097862 + AluJo SINE Alu 4 300 -12 297 272 37 25 chr12 44185080 44185161 -100097328 + MER5B DNA MER1_type 67 148 -30 25 51 0 0 chr12 44185707 44185746 -100096743 + AT_rich Low_complexity Low_complexity 1 39 0 276 311 37 34 chr12 44185804 44185972 -100096517 + MER5A DNA MER1_type 4 178 0 1970 135 18 0 chr12 44186659 44186941 -100095548 + AluSx SINE Alu 2 288 -24 661 317 68 4 chr12 44186961 44187226 -100095263 + MLT1G3 LTR MaLR 21 302 -228 1973 145 0 19 chr12 44187572 44187890 -100094599 + AluJo SINE Alu 1 312 0 1188 161 24 15 chr12 44187976 44188181 -100094308 - AluJo SINE Alu -19 293 87 644 306 45 30 chr12 44188747 44189012 -100093477 + MLT1I LTR MaLR 102 370 -39 415 122 27 14 chr12 44189044 44189118 -100093371 - L1MB7 LINE L1 -51 6133 6059 * 1965 155 68 24 chr12 44189098 44189512 -100092977 + L1MB7 LINE L1 5618 6049 -135 387 191 21 64 chr12 44190247 44190341 -100092148 + L1MD2 LINE L1 6031 6120 -239 240 122 0 0 chr12 44190408 44190449 -100092040 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1414 164 47 23 chr12 44190450 44190706 -100091783 - AluJb SINE Alu -48 264 3 439 134 0 0 chr12 44190800 44190867 -100091622 + AluSq/x SINE Alu 70 136 -176 2189 110 13 0 chr12 44190867 44191166 -100091323 + AluY SINE Alu 1 303 -8 1840 84 8 20 chr12 44191166 44191417 -100091072 + AluY SINE Alu 56 303 -8 1459 157 48 59 chr12 44192576 44192913 -100089576 + L1MA7 LINE L1 5958 6290 -1 204 395 151 26 chr12 44192927 44193198 -100089291 + L2 LINE L2 2932 3236 -36 1375 144 130 40 chr12 44193216 44193493 -100088996 - AluJo SINE Alu -10 302 1 1338 176 8 4 chr12 44193833 44194095 -100088394 - L1P LINE L1 -4421 1725 1463 2203 128 0 3 chr12 44194347 44194652 -100087837 + AluSx SINE Alu 5 308 -4 361 203 16 0 chr12 44194813 44194877 -100087612 + MIR SINE MIR 19 83 -179 23 0 0 0 chr12 44195200 44195223 -100087266 + AT_rich Low_complexity Low_complexity 1 23 0 26 74 0 0 chr12 44195625 44195679 -100086810 + AT_rich Low_complexity Low_complexity 1 54 0 387 206 271 0 chr12 44195968 44196075 -100086414 + MIR SINE MIR 126 261 -1 649 162 20 61 chr12 44197272 44197420 -100085069 - FLAM_C SINE Alu -1 142 1 1885 131 10 48 chr12 44198130 44198443 -100084046 + AluSx SINE Alu 3 303 -9 218 103 86 35 chr12 44198444 44198502 -100083987 + (TTAAA)n Simple_repeat Simple_repeat 1 61 0 262 327 37 47 chr12 44198795 44198902 -100083587 + L2 LINE L2 3155 3260 -12 2371 95 0 0 chr12 44199515 44199811 -100082678 + AluSx SINE Alu 1 296 -16 243 206 108 62 chr12 44200036 44200193 -100082296 - L1P LINE L1 -724 5427 5266 26 74 0 0 chr12 44200426 44200480 -100082009 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr12 44200884 44200906 -100081583 + AT_rich Low_complexity Low_complexity 1 22 0 396 221 110 73 chr12 44200915 44201169 -100081320 - MER5C DNA MER1_type 0 324 1 25 83 0 0 chr12 44201369 44201429 -100081060 + AT_rich Low_complexity Low_complexity 1 60 0 1781 158 14 7 chr12 44201523 44201814 -100080675 - AluJb SINE Alu -18 294 2 398 108 15 0 chr12 44202568 44202633 -100079856 + (TA)n Simple_repeat Simple_repeat 2 67 0 230 250 0 0 chr12 44202656 44202708 -100079781 + L1M4 LINE L1 4489 4540 -1606 410 211 48 95 chr12 44202966 44203113 -100079376 - MIR SINE MIR 0 262 123 613 226 23 115 chr12 44203982 44204331 -100078158 - L1MC4 LINE L1 0 8042 7726 * 5083 246 99 34 chr12 44204323 44206428 -100076061 - L1MC4a LINE L1 -263 7545 5304 498 219 44 0 chr12 44206424 44206538 -100075951 - L1MB7 LINE L1 0 6184 6066 * 1292 214 7 11 chr12 44206721 44206997 -100075492 - AluJo SINE Alu -15 297 23 7744 21 0 0 chr12 44206997 44208308 -100074181 + L1PA2 LINE L1 4843 6153 -2 57 0 0 0 chr12 44208526 44208583 -100073906 + AT_rich Low_complexity Low_complexity 1 57 0 1452 168 67 15 chr12 44208583 44208851 -100073638 - AluJo SINE Alu -30 282 1 2595 52 0 0 chr12 44209622 44209929 -100072560 - AluY SINE Alu -4 307 1 562 257 81 40 chr12 44209972 44210194 -100072295 - L3 LINE CR1 -109 1468 1238 1795 180 81 128 chr12 44210557 44211320 -100071169 + LTR8A LTR ERV1 1 727 0 221 342 25 0 chr12 44211445 44211524 -100070965 - L2 LINE L2 -1 3271 3191 7118 117 23 2 chr12 44212204 44213642 -100068847 - L1MA3 LINE L1 0 6305 4833 1533 191 0 14 chr12 44214066 44214359 -100068130 + AluSx SINE Alu 3 291 -21 465 279 19 39 chr12 44214999 44215153 -100067336 + L2 LINE L2 3161 3311 -2 180 0 0 0 chr12 44216184 44216204 -100066285 + (A)n Simple_repeat Simple_repeat 1 20 0 976 178 0 35 chr12 44217203 44217377 -100065112 - AluJb SINE Alu -10 302 135 12400 56 3 9 chr12 44217806 44219395 -100063094 + L1PA4 LINE L1 3 1581 -4565 21688 33 1 0 chr12 44219395 44222804 -100059685 + L1PA4 LINE L1 2741 6152 -3 26 30 0 0 chr12 44222804 44222837 -100059652 + AT_rich Low_complexity Low_complexity 1 33 0 2000 115 66 36 chr12 44223156 44223520 -100058969 - THE1C LTR MaLR 0 375 1 334 134 45 0 chr12 44224317 44224384 -100058105 + MLT1J LTR MaLR 439 508 -3 2337 70 7 3 chr12 44224803 44225104 -100057385 - AluY SINE Alu -9 302 1 316 249 34 124 chr12 44225738 44225915 -100056574 - L2 LINE L2 -52 3261 3101 1227 233 113 55 chr12 44225965 44226462 -100056027 - MLT1H1 LTR MaLR 0 577 20 2659 252 241 41 chr12 44226476 44227023 -100055466 - L2 LINE L2 -266 3047 2611 2081 109 26 7 chr12 44227023 44227325 -100055164 + AluSx SINE Alu 1 308 -4 2659 252 241 41 chr12 44227325 44228247 -100054242 - L2 LINE L2 -702 2611 1271 1933 116 52 68 chr12 44228247 44228628 -100053861 + THE1C LTR MaLR 1 375 0 2659 252 241 41 chr12 44228628 44228677 -100053812 - L2 LINE L2 -2042 1271 1233 3297 141 45 14 chr12 44228686 44229515 -100052974 + MER49 LTR ERV1 16 908 -15 1982 224 102 37 chr12 44229538 44229726 -100052763 - L2 LINE L2 -2075 1239 1065 1821 145 0 43 chr12 44229726 44230030 -100052459 - AluJb SINE Alu -19 293 3 1982 224 102 37 chr12 44230030 44230439 -100052050 - L2 LINE L2 -2249 1065 603 12494 35 4 2 chr12 44231076 44232694 -100049795 - L1P LINE L1 -3051 3095 1476 198 0 0 0 chr12 44232870 44232892 -100049597 + (A)n Simple_repeat Simple_repeat 1 22 0 1927 123 18 0 chr12 44233098 44233374 -100049115 + AluSx SINE Alu 1 281 -31 279 79 0 0 chr12 44233395 44233433 -100049056 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1881 99 33 59 chr12 44233861 44234164 -100048325 + AluSx SINE Alu 1 295 -17 1083 146 6 12 chr12 44234164 44234328 -100048161 + AluJb SINE Alu 137 299 -13 24 53 0 0 chr12 44234395 44234433 -100048056 + AT_rich Low_complexity Low_complexity 1 38 0 2178 125 51 14 chr12 44234456 44234808 -100047681 + MLT1A1 LTR MaLR 1 365 0 2445 80 0 0 chr12 44235013 44235312 -100047177 + AluY SINE Alu 1 299 -12 353 322 33 16 chr12 44235368 44235489 -100047000 - MER5A DNA MER1_type -6 183 61 270 336 16 8 chr12 44236217 44236339 -100046150 + MLT1K LTR MaLR 141 263 -325 1062 160 59 8 chr12 44236572 44236809 -100045680 + L1MA9 LINE L1 6064 6312 0 342 292 55 31 chr12 44236815 44236952 -100045537 - MIR SINE MIR -65 143 14 1548 173 27 50 chr12 44237453 44237753 -100044736 - AluJo SINE Alu -13 299 7 21 36 0 0 chr12 44238149 44238177 -100044312 + AT_rich Low_complexity Low_complexity 1 28 0 222 91 0 0 chr12 44239101 44239134 -100043355 + (CA)n Simple_repeat Simple_repeat 2 34 0 370 294 81 113 chr12 44239439 44240057 -100042432 + L1M2 LINE L1 785 1382 -5467 509 290 74 3 chr12 44240202 44240402 -100042087 + MIR SINE MIR 6 217 -45 203 313 30 0 chr12 44240704 44240771 -100041718 - L2 LINE L2 -3 3310 3242 408 336 41 41 chr12 44241034 44241278 -100041211 - L2 LINE L2 -440 2874 2631 258 321 0 12 chr12 44241603 44241684 -100040805 - L2 LINE L2 0 3272 3193 2357 74 3 19 chr12 44242699 44243009 -100039480 - AluSc SINE Alu -4 305 1 792 147 7 29 chr12 44243254 44243390 -100039099 + FLAM_C SINE Alu 1 133 0 243 79 0 0 chr12 44243454 44243492 -100038997 + (A)n Simple_repeat Simple_repeat 1 38 0 26 0 0 0 chr12 44244123 44244149 -100038340 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 44244358 44244380 -100038109 + AT_rich Low_complexity Low_complexity 1 22 0 1995 165 0 0 chr12 44244385 44244694 -100037795 + AluJb SINE Alu 1 309 -3 983 120 0 0 chr12 44244767 44244892 -100037597 + AluSq/x SINE Alu 1 125 -187 1558 110 4 9 chr12 44244892 44245120 -100037369 + AluSp SINE Alu 86 312 -1 1348 96 46 14 chr12 44245177 44245396 -100037093 + L1MA1 LINE L1 6069 6294 -8 336 161 0 0 chr12 44245429 44245491 -100036998 + GA-rich Low_complexity Low_complexity 3 64 0 31 44 0 0 chr12 44245671 44245716 -100036773 + AT_rich Low_complexity Low_complexity 1 45 0 2121 84 0 18 chr12 44245830 44246114 -100036375 + AluSc SINE Alu 31 309 0 6630 112 34 15 chr12 44246199 44246918 -100035571 + L1MA2 LINE L1 4092 4796 -1508 2102 130 13 0 chr12 44246918 44247225 -100035264 + AluSx SINE Alu 1 311 -1 6630 112 34 15 chr12 44247225 44248673 -100033816 + L1MA2 LINE L1 4796 6304 0 226 211 11 67 chr12 44249148 44249238 -100033251 + A-rich Low_complexity Low_complexity 6 90 0 748 174 0 0 chr12 44249259 44249380 -100033109 + AluJb SINE Alu 13 133 -179 2306 99 0 3 chr12 44249538 44249842 -100032647 - AluSx SINE Alu -9 303 1 2505 127 50 10 chr12 44250723 44251139 -100031350 - Tigger2a DNA MER2_type 0 434 2 1411 205 101 24 chr12 44252162 44252586 -100029903 - MSTB2 LTR MaLR 0 457 1 192 77 0 0 chr12 44252886 44252912 -100029577 + (TA)n Simple_repeat Simple_repeat 2 27 0 635 158 97 0 chr12 44252918 44253032 -100029457 - AluJb SINE Alu -187 125 1 440 239 72 43 chr12 44253545 44253683 -100028806 - MIR SINE MIR -2 260 119 207 0 0 0 chr12 44256457 44256480 -100026009 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 211 303 0 0 chr12 44256743 44256809 -100025680 + T-rich Low_complexity Low_complexity 1 66 0 205 226 113 0 chr12 44257463 44257516 -100024973 - L2 LINE L2 0 3313 3255 889 187 70 12 chr12 44258113 44258284 -100024205 - MER5A DNA MER1_type -2 187 7 1809 141 57 20 chr12 44259902 44260201 -100022288 + AluJb SINE Alu 3 312 0 352 253 95 0 chr12 44260203 44260298 -100022191 - L2 LINE L2 -4 3309 3206 341 258 17 8 chr12 44260442 44260562 -100021927 - Looper DNA T2_type -110 1448 1328 2282 98 0 25 chr12 44260566 44260883 -100021606 - AluY SINE Alu -2 309 1 3276 176 103 33 chr12 44260905 44260989 -100021500 - Looper DNA T2_type -236 1322 1245 320 73 36 0 chr12 44260989 44261044 -100021445 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 2023 101 25 7 chr12 44261047 44261325 -100021164 - AluSx SINE Alu -29 283 1 3276 176 103 33 chr12 44261325 44262147 -100020342 - Looper DNA T2_type -314 1244 239 2203 74 0 0 chr12 44262147 44262432 -100020057 + L1PA8 LINE L1 5888 6172 0 3276 176 103 33 chr12 44262432 44262664 -100019825 - Looper DNA T2_type -1319 239 25 925 148 59 35 chr12 44262836 44263005 -100019484 + AluJo SINE Alu 1 173 -139 2230 121 0 10 chr12 44263288 44263594 -100018895 - AluSq SINE Alu -10 303 1 45 45 0 0 chr12 44263918 44263984 -100018505 + AT_rich Low_complexity Low_complexity 1 66 0 401 275 174 54 chr12 44264079 44264522 -100017967 + L2 LINE L2 1663 2158 -1156 2033 130 10 0 chr12 44264525 44264825 -100017664 - AluJb SINE Alu -9 303 1 1955 173 0 3 chr12 44264971 44265284 -100017205 - AluJo SINE Alu 0 312 1 227 286 184 0 chr12 44265342 44265440 -100017049 + L2 LINE L2 3197 3312 -1 990 160 11 139 chr12 44265640 44265927 -100016562 + AluYb8 SINE Alu 1 250 -68 2110 127 7 0 chr12 44266103 44266403 -100016086 - AluSx SINE Alu -10 302 1 974 175 0 28 chr12 44266455 44266632 -100015857 + FAM SINE Alu 2 173 -2 1894 155 0 33 chr12 44266784 44267087 -100015402 + AluJb SINE Alu 1 293 -19 23 0 0 0 chr12 44267422 44267445 -100015044 + AT_rich Low_complexity Low_complexity 1 23 0 1854 188 5 25 chr12 44267747 44268145 -100014344 + L1MB8 LINE L1 5640 6029 -149 354 80 0 0 chr12 44268145 44268195 -100014294 + (GA)n Simple_repeat Simple_repeat 2 51 0 766 195 8 0 chr12 44268223 44268351 -100014138 - FRAM SINE Alu -30 146 18 361 194 0 122 chr12 44268822 44268920 -100013569 - L2 LINE L2 0 3313 3228 1813 265 133 21 chr12 44268951 44269656 -100012833 + L2 LINE L2 1380 2163 -1151 330 269 43 21 chr12 44269667 44269760 -100012729 + MER5A DNA MER1_type 1 95 -94 228 286 17 59 chr12 44269718 44269837 -100012652 + L2 LINE L2 2108 2221 -1093 * 227 193 0 70 chr12 44269837 44269894 -100012595 - MER5B DNA MER1_type 0 178 126 1971 206 53 40 chr12 44270109 44270658 -100011831 + L1ME1 LINE L1 5611 6166 0 751 152 55 48 chr12 44270708 44270873 -100011616 + FRAM SINE Alu 1 166 0 209 218 269 13 chr12 44270905 44270983 -100011506 + MER5B DNA MER1_type 81 178 0 355 213 75 0 chr12 44270983 44271077 -100011412 + L2 LINE L2 2215 2315 -999 1540 145 4 4 chr12 44271077 44271305 -100011184 + AluSx SINE Alu 1 228 -84 225 81 0 0 chr12 44271305 44271342 -100011147 + AluSx SINE Alu 263 299 -2 1157 155 6 0 chr12 44271359 44271533 -100010956 - AluSx SINE Alu -137 175 1 759 255 147 95 chr12 44271541 44271792 -100010697 + L2 LINE L2 2357 2594 -719 2174 116 0 17 chr12 44271792 44272094 -100010395 + AluSq SINE Alu 1 297 -16 759 255 147 95 chr12 44272094 44272364 -100010125 + L2 LINE L2 2594 2940 -373 1456 180 29 80 chr12 44272364 44272775 -100009714 - MLT1B LTR MaLR 0 390 1 759 255 147 95 chr12 44272775 44272895 -100009594 + L2 LINE L2 2940 3052 -261 365 202 52 165 chr12 44272945 44273193 -100009296 + L2 LINE L2 3039 3258 -55 554 276 18 18 chr12 44273329 44273492 -100008997 + MER5B DNA MER1_type 1 163 -15 29 0 0 0 chr12 44273725 44273754 -100008735 + AT_rich Low_complexity Low_complexity 1 29 0 320 125 0 36 chr12 44273949 44274005 -100008484 - MER5B DNA MER1_type 0 178 125 954 183 0 24 chr12 44274016 44274185 -100008304 + FRAM SINE Alu 1 162 -14 299 255 19 85 chr12 44274191 44274297 -100008192 - MER5B DNA MER1_type -60 118 20 1957 144 0 0 chr12 44274300 44274584 -100007905 + AluSx SINE Alu 1 284 -28 1682 151 23 0 chr12 44274668 44274926 -100007563 + AluJb SINE Alu 49 312 0 1477 234 120 38 chr12 44275199 44275747 -100006742 + MLT1E LTR MaLR 1 593 0 2150 123 10 3 chr12 44275778 44276079 -100006410 + AluSx SINE Alu 1 303 -9 9328 112 45 54 chr12 44278000 44279435 -100003054 + Tigger1 DNA MER2_type 4 1450 -968 2175 122 0 0 chr12 44279435 44279722 -100002767 - AluSx SINE Alu -25 287 1 9328 112 45 54 chr12 44279722 44280007 -100002482 + Tigger1 DNA MER2_type 1450 1736 -682 1725 160 4 7 chr12 44280007 44280288 -100002201 + AluSx SINE Alu 1 280 -32 273 29 0 0 chr12 44280289 44280323 -100002166 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 9328 112 45 54 chr12 44280323 44280979 -100001510 + Tigger1 DNA MER2_type 1735 2386 -32 27 0 0 0 chr12 44280994 44281021 -100001468 + AT_rich Low_complexity Low_complexity 1 27 0 2032 119 37 3 chr12 44281030 44281324 -100001165 + AluSx SINE Alu 1 304 -8 741 147 42 21 chr12 44281325 44281501 -100000988 + AluSg/x SINE Alu 135 313 0 1805 140 7 4 chr12 44281548 44281820 -100000669 + AluSq SINE Alu 41 313 0 221 167 0 0 chr12 44282239 44282281 -100000208 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1700 154 4 15 chr12 44282290 44282550 -99999939 - AluJo SINE Alu -33 279 23 356 229 29 0 chr12 44282662 44282732 -99999757 + MIR SINE MIR 6 77 -185 970 206 36 7 chr12 44282875 44283268 -99999221 + MLT1F LTR MaLR 45 590 -3 2124 140 3 3 chr12 44283490 44283798 -99998691 - AluSx SINE Alu -4 308 1 25 0 0 0 chr12 44283800 44283825 -99998664 + AT_rich Low_complexity Low_complexity 1 25 0 401 295 31 132 chr12 44283906 44284262 -99998227 - L2 LINE L2 -19 3253 2934 213 221 58 39 chr12 44284687 44284791 -99997698 + (TATATG)n Simple_repeat Simple_repeat 1 106 0 21 71 0 0 chr12 44284842 44284884 -99997605 + AT_rich Low_complexity Low_complexity 1 42 0 1571 204 6 16 chr12 44285174 44285487 -99997002 + AluJb SINE Alu 2 311 -1 325 291 67 8 chr12 44285575 44285709 -99996780 - L1M4 LINE L1 -2932 3214 3073 369 269 71 46 chr12 44286410 44286607 -99995882 - L1M4 LINE L1 -3741 2405 2204 291 279 16 0 chr12 44286744 44286805 -99995684 - L2 LINE L2 -23 3249 3188 1555 119 190 8 chr12 44286918 44287171 -99995318 + AluSx SINE Alu 1 299 -13 383 319 155 53 chr12 44287200 44287338 -99995151 - L2 LINE L2 -404 2910 2788 1691 180 0 3 chr12 44287338 44287647 -99994842 + AluJo SINE Alu 1 308 0 383 319 155 53 chr12 44287647 44287868 -99994621 - L2 LINE L2 -526 2788 2513 4320 142 53 39 chr12 44287944 44288144 -99994345 + Tigger3b DNA MER2_type 2 198 -2830 2198 92 0 16 chr12 44288144 44288447 -99994042 + AluSx SINE Alu 1 298 -14 4320 142 53 39 chr12 44288447 44288619 -99993870 + Tigger3b DNA MER2_type 198 366 -2662 1757 175 14 14 chr12 44288619 44288916 -99993573 - AluJb SINE Alu -15 297 1 4320 142 53 39 chr12 44288916 44289441 -99993048 + Tigger3b DNA MER2_type 366 913 -318 1746 141 0 0 chr12 44289474 44289723 -99992766 + AluSq SINE Alu 1 249 -64 208 329 0 41 chr12 44289822 44289895 -99992594 - L2 LINE L2 0 3272 3203 244 211 88 0 chr12 44289938 44289995 -99992494 - L2 LINE L2 -951 2363 2302 306 373 141 28 chr12 44290731 44291050 -99991439 - L2 LINE L2 -2 3270 2916 2286 103 0 16 chr12 44291052 44291364 -99991125 + AluSx SINE Alu 1 307 -5 227 325 0 0 chr12 44291660 44291737 -99990752 - Charlie8 DNA MER1_type 0 2417 2341 304 288 65 20 chr12 44291770 44291923 -99990566 - Charlie8 DNA MER1_type -2212 205 46 191 208 299 13 chr12 44292098 44292175 -99990314 + L2 LINE L2 3164 3262 -10 1868 164 0 10 chr12 44293413 44293712 -99988777 + AluJb SINE Alu 1 296 -16 655 133 76 0 chr12 44293957 44294093 -99988396 + MER33 DNA MER1_type 1 132 -86 245 368 68 8 chr12 44295158 44295275 -99987214 - L2 LINE L2 -2 3270 3147 727 244 27 80 chr12 44295923 44296148 -99986341 + MIR SINE MIR 28 240 -22 241 301 136 30 chr12 44296209 44296408 -99986081 - L1ME LINE L1 -357 5805 5586 271 223 139 25 chr12 44296426 44296614 -99985875 - L1ME LINE L1 -696 5466 5255 201 74 0 0 chr12 44296695 44296722 -99985767 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1691 172 0 4 chr12 44296723 44296985 -99985504 - AluSx SINE Alu -51 261 1 865 259 68 20 chr12 44297384 44297735 -99984754 - L1ME3 LINE L1 0 6145 5778 2212 115 7 0 chr12 44297751 44298047 -99984442 - AluSq SINE Alu -13 300 3 449 331 55 48 chr12 44298054 44298347 -99984142 - L1ME3 LINE L1 -1388 4741 4447 373 301 59 54 chr12 44298554 44298757 -99983732 - L1ME3 LINE L1 -2045 4084 3881 680 172 26 33 chr12 44299055 44299206 -99983283 + FAM SINE Alu 1 48 -1 921 207 25 0 chr12 44299218 44299421 -99983068 + L1MB7 LINE L1 5441 5648 -536 1454 170 40 7 chr12 44299422 44299698 -99982791 - MER2 DNA MER2_type -1 344 60 1548 177 123 29 chr12 44299729 44300175 -99982314 + L1MB7 LINE L1 5697 6184 0 25 31 0 0 chr12 44300294 44300326 -99982163 + AT_rich Low_complexity Low_complexity 1 32 0 2393 96 0 0 chr12 44300483 44300785 -99981704 - AluSg1 SINE Alu -7 302 1 415 273 88 4 chr12 44300793 44301031 -99981458 - L1ME3 LINE L1 -2979 3150 2893 604 223 61 58 chr12 44301034 44301344 -99981145 - L1ME3 LINE L1 -4914 1205 895 180 0 0 0 chr12 44301410 44301430 -99981059 + (A)n Simple_repeat Simple_repeat 1 20 0 2209 114 0 0 chr12 44301439 44301736 -99980753 + AluSx SINE Alu 1 297 -15 213 261 0 0 chr12 44301909 44301955 -99980534 - MIR SINE MIR -111 151 106 330 162 103 60 chr12 44301989 44302106 -99980383 - L1MC4 LINE L1 -15 8027 7906 26 30 0 0 chr12 44302573 44302606 -99979883 + AT_rich Low_complexity Low_complexity 1 33 0 2483 54 3 0 chr12 44302723 44303021 -99979468 + AluY SINE Alu 1 299 -12 30 0 0 0 chr12 44303198 44303228 -99979261 + AT_rich Low_complexity Low_complexity 1 30 0 1942 135 14 7 chr12 44303258 44303539 -99978950 + AluSx SINE Alu 1 283 -29 207 0 0 0 chr12 44303557 44303580 -99978909 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2049 162 0 0 chr12 44304394 44304702 -99977787 + AluJb SINE Alu 1 308 -4 2316 95 3 0 chr12 44304915 44305210 -99977279 - AluSp SINE Alu -17 296 1 2322 114 0 0 chr12 44306257 44306564 -99975925 + AluSx SINE Alu 1 307 -5 2173 108 7 26 chr12 44306569 44306876 -99975613 + AluSx SINE Alu 3 303 -9 1978 125 50 0 chr12 44306879 44307159 -99975330 + AluSx SINE Alu 1 294 -18 418 88 0 0 chr12 44308174 44308231 -99974258 + Alu SINE Alu 1 57 -252 437 232 127 57 chr12 44308231 44308464 -99974025 + MLT1F1 LTR MaLR 184 419 -174 21 0 0 0 chr12 44308507 44308528 -99973961 + AT_rich Low_complexity Low_complexity 1 21 0 274 298 190 29 chr12 44309059 44309396 -99973093 + L2 LINE L2 2589 3010 -303 1815 167 7 0 chr12 44309396 44309684 -99972805 - AluJb SINE Alu -22 290 1 274 298 190 29 chr12 44309684 44309757 -99972732 + L2 LINE L2 3010 3070 -243 2024 123 0 0 chr12 44309834 44310111 -99972378 + AluSx SINE Alu 1 277 -35 204 40 0 0 chr12 44310123 44310148 -99972341 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 231 303 101 0 chr12 44310148 44310247 -99972242 + L2 LINE L2 3204 3312 -1 743 156 33 0 chr12 44310401 44310523 -99971966 + FLAM_C SINE Alu 1 126 -17 1955 108 17 24 chr12 44310753 44311091 -99971398 + AluSx SINE Alu 1 336 0 671 322 53 73 chr12 44311497 44312195 -99970294 + L2 LINE L2 1966 2649 -665 387 0 0 0 chr12 44313298 44313341 -99969148 + (CA)n Simple_repeat Simple_repeat 2 44 0 1886 145 84 5 chr12 44313348 44313793 -99968696 + Ricksha DNA DNA 2803 3245 -13 250 355 0 0 chr12 44314648 44314755 -99967734 + (CA)n Simple_repeat Simple_repeat 2 108 0 746 232 140 0 chr12 44314852 44315016 -99967473 - MER5A DNA MER1_type 0 189 3 1726 161 50 11 chr12 44316403 44316682 -99965807 + AluJo SINE Alu 1 290 -22 200 204 0 45 chr12 44317083 44317127 -99965362 + L3 LINE CR1 1535 1576 -1 309 225 138 0 chr12 44317926 44318006 -99964483 + MIR SINE MIR 172 262 0 285 128 0 0 chr12 44318440 44318487 -99964002 + (CA)n Simple_repeat Simple_repeat 2 48 0 886 115 8 8 chr12 44318639 44318769 -99963720 - AluJo SINE Alu -178 134 5 2878 51 0 0 chr12 44318799 44319173 -99963316 + L1PA8 LINE L1 5804 6177 0 6901 49 14 17 chr12 44319491 44321253 -99961236 - L1PA7 LINE L1 -1 6153 4390 1760 181 3 7 chr12 44321495 44321794 -99960695 + AluJo SINE Alu 3 300 -12 321 306 48 75 chr12 44321979 44322273 -99960216 - L1M2 LINE L1 -5968 881 596 2608 89 28 83 chr12 44322315 44323079 -99959410 + SVA Other Other 393 868 -520 1242 88 16 107 chr12 44323103 44323533 -99958956 + SVA Other Other 476 866 -520 6575 58 14 57 chr12 44323550 44324547 -99957942 + SVA Other Other 433 1386 0 250 337 109 0 chr12 44324547 44324633 -99957856 - L2 LINE L2 -16 3256 3161 1755 156 87 3 chr12 44324697 44325018 -99957471 - MER7A DNA MER2_type 0 346 1 2151 122 7 0 chr12 44325099 44325429 -99957060 + AluSc SINE Alu 11 342 0 255 379 0 21 chr12 44325473 44325568 -99956921 - L2 LINE L2 -455 2859 2767 5394 176 89 25 chr12 44326162 44327528 -99954961 - Charlie1a DNA MER1_type 0 1455 2 283 301 72 0 chr12 44328135 44328218 -99954271 + L2 LINE L2 3184 3272 0 1979 145 0 3 chr12 44328630 44328920 -99953569 - AluJo SINE Alu -18 294 6 2222 109 0 31 chr12 44329001 44329354 -99953135 + AluSx SINE Alu 1 343 0 579 214 28 0 chr12 44329487 44329632 -99952857 + L1PA16 LINE L1 6009 6157 -9 231 360 30 51 chr12 44329715 44329828 -99952661 + L3b LINE CR1 1306 1415 -168 1869 182 0 0 chr12 44329828 44330124 -99952365 + AluJb SINE Alu 11 306 -6 231 360 30 51 chr12 44330124 44330207 -99952282 + L3b LINE CR1 1415 1498 -85 21 57 0 0 chr12 44332670 44332705 -99949784 + GC_rich Low_complexity Low_complexity 1 35 0 212 203 0 34 chr12 44332896 44332955 -99949534 + C-rich Low_complexity Low_complexity 3 59 0 230 270 14 0 chr12 44333020 44333094 -99949395 + (CCG)n Simple_repeat Simple_repeat 3 77 0 22 0 0 0 chr12 44333102 44333124 -99949365 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 44333239 44333261 -99949228 + GC_rich Low_complexity Low_complexity 1 22 0 203 171 24 0 chr12 44333370 44333411 -99949078 + G-rich Low_complexity Low_complexity 4 45 0 26 82 0 0 chr12 44333568 44333629 -99948860 + GC_rich Low_complexity Low_complexity 1 61 0 270 335 73 22 chr12 44333977 44334141 -99948348 - MIR SINE MIR -80 128 4 186 352 39 17 chr12 44334283 44334462 -99948027 + L2 LINE L2 2607 2789 -525 2140 103 0 10 chr12 44334839 44335140 -99947349 + AluSx SINE Alu 1 298 -14 518 189 0 0 chr12 44335243 44335333 -99947156 - Tigger5 DNA MER2_type 0 2323 2234 244 51 26 26 chr12 44335331 44335370 -99947119 - Tigger5 DNA MER2_type -33 2290 2252 * 326 93 0 0 chr12 44335340 44335383 -99947106 - Tigger5 DNA MER2_type -2268 55 13 207 305 168 38 chr12 44335385 44335516 -99946973 - MIR3 SINE MIR -51 157 10 186 241 0 60 chr12 44335713 44335796 -99946693 + MIR3 SINE MIR 125 202 -6 386 155 61 142 chr12 44335942 44336090 -99946399 + L2 LINE L2 3178 3313 0 698 138 0 9 chr12 44336110 44336219 -99946270 + FLAM_A SINE Alu 12 119 -23 279 71 0 0 chr12 44336791 44336833 -99945656 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 768 214 14 0 chr12 44336846 44336991 -99945498 - FRAM SINE Alu -19 147 1 2076 149 0 0 chr12 44337027 44337329 -99945160 + AluJb SINE Alu 10 311 -1 1649 147 0 75 chr12 44337349 44337557 -99944932 + 7SLRNA srpRNA srpRNA 29 208 -112 2281 106 0 7 chr12 44337557 44337858 -99944631 + AluSx SINE Alu 2 300 -12 1649 147 0 75 chr12 44337858 44337956 -99944533 + 7SLRNA srpRNA srpRNA 208 312 -8 2007 148 0 13 chr12 44338149 44338454 -99944035 + AluJo SINE Alu 1 301 -11 2132 114 46 58 chr12 44338815 44338931 -99943558 - MLT1B LTR MaLR -2 388 272 2351 98 10 7 chr12 44338931 44339237 -99943252 + AluY SINE Alu 1 307 -4 2132 114 46 58 chr12 44339237 44339513 -99942976 - MLT1B LTR MaLR -118 272 1 1086 259 26 32 chr12 44339586 44339866 -99942623 - MER46C DNA MER2_type 0 338 59 2563 40 0 7 chr12 44339866 44340162 -99942327 + AluY SINE Alu 1 294 -17 1086 259 26 32 chr12 44340162 44340221 -99942268 - MER46C DNA MER2_type -279 59 1 732 279 57 3 chr12 44340260 44340558 -99941931 + L1ME4a LINE L1 5599 5912 -209 2496 84 0 3 chr12 44340633 44340943 -99941546 - AluSq SINE Alu -4 309 1 1989 142 0 10 chr12 44340943 44341245 -99941244 - AluJb SINE Alu -13 299 1 667 197 184 71 chr12 44341627 44341847 -99940642 - LTR50 LTR ERVL -354 441 247 2224 103 3 17 chr12 44341847 44342148 -99940341 + AluSx SINE Alu 1 297 -15 667 197 184 71 chr12 44342148 44342307 -99940182 - LTR50 LTR ERVL -548 247 19 1570 283 70 45 chr12 44342557 44342976 -99939513 - ERVL LTR ERVL -236 5528 5082 5198 112 16 0 chr12 44342976 44343728 -99938761 - L1PA11 LINE L1 0 6174 5411 1570 283 70 45 chr12 44343728 44344023 -99938466 - ERVL LTR ERVL -682 5082 4796 35711 77 11 8 chr12 44344023 44349687 -99932802 - L1PA6 LINE L1 -1 6468 786 586 128 12 0 chr12 44349688 44349774 -99932715 - L1PA6 LINE L1 -6365 96 10 2321 121 0 0 chr12 44349786 44350092 -99932397 - AluSx SINE Alu -6 306 1 5105 272 50 21 chr12 44350092 44351583 -99930906 - ERVL LTR ERVL -958 4806 3273 2341 91 7 0 chr12 44351740 44352036 -99930453 + AluSq SINE Alu 1 298 -15 2131 108 3 7 chr12 44352044 44352354 -99930135 + AluSx SINE Alu 1 309 0 203 296 11 51 chr12 44352428 44352604 -99929885 + T-rich Low_complexity Low_complexity 2 170 0 621 147 211 0 chr12 44353554 44353663 -99928826 - AluJb SINE Alu -179 133 2 432 0 0 0 chr12 44353688 44353736 -99928753 + (TA)n Simple_repeat Simple_repeat 2 49 0 1634 147 30 53 chr12 44353742 44354042 -99928447 - AluSx SINE Alu -19 293 1 39 0 0 0 chr12 44354044 44354083 -99928406 + AT_rich Low_complexity Low_complexity 1 39 0 2635 146 18 33 chr12 44354132 44354580 -99927909 - MER31A LTR ERV1 -4 481 39 2660 33 3 0 chr12 44354580 44354884 -99927605 + AluY SINE Alu 1 305 -6 2635 146 18 33 chr12 44354884 44354923 -99927566 - MER31A LTR ERV1 -446 39 1 790 225 28 6 chr12 44354923 44355105 -99927384 + MIR SINE MIR 39 224 -38 943 189 6 6 chr12 44355106 44355286 -99927203 + AluSg/x SINE Alu 131 310 0 321 169 0 0 chr12 44355286 44355345 -99927144 + GA-rich Low_complexity Low_complexity 4 62 0 552 221 39 0 chr12 44355413 44355540 -99926949 + MIR SINE MIR 29 160 -102 673 120 0 0 chr12 44355541 44355641 -99926848 + AluSg/x SINE Alu 204 303 -7 2043 138 3 7 chr12 44355914 44356219 -99926270 + AluSx SINE Alu 1 304 -8 1834 158 7 7 chr12 44356254 44356546 -99925943 - AluJb SINE Alu -20 292 1 252 0 0 0 chr12 44356678 44356706 -99925783 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1311 14 0 0 chr12 44356706 44356853 -99925636 - L1PA3 LINE L1 -16 6139 5993 363 296 0 0 chr12 44356868 44356976 -99925513 + MIR3 SINE MIR 101 208 0 234 0 0 0 chr12 44357302 44357328 -99925161 + (CA)n Simple_repeat Simple_repeat 2 27 0 3800 216 30 9 chr12 44358080 44358919 -99923570 - L1ME1 LINE L1 -18 6148 5293 1813 173 35 42 chr12 44358938 44359338 -99923151 - L1MB4 LINE L1 -6 6174 5778 * 2710 229 44 14 chr12 44359331 44359384 -99923105 - L1ME1 LINE L1 -851 5295 5245 252 0 0 0 chr12 44359384 44359412 -99923077 + (TA)n Simple_repeat Simple_repeat 2 29 0 1768 181 10 3 chr12 44359412 44359710 -99922779 - AluJb SINE Alu -9 303 4 2710 229 44 14 chr12 44359710 44360384 -99922105 - L1ME1 LINE L1 -900 5246 4545 3453 117 35 36 chr12 44360704 44361278 -99921211 - L1MB3 LINE L1 -1 6182 5608 2224 117 3 0 chr12 44361278 44361578 -99920911 - AluSx SINE Alu -11 301 1 3453 117 35 36 chr12 44361578 44361610 -99920879 - L1MB3 LINE L1 -575 5608 5577 7157 160 133 26 chr12 44361797 44363295 -99919194 - MER52A LTR ERV1 0 1755 1 2239 116 0 13 chr12 44363387 44363698 -99918791 - AluSx SINE Alu -5 307 1 26 0 0 0 chr12 44363700 44363726 -99918763 + AT_rich Low_complexity Low_complexity 1 26 0 299 125 0 0 chr12 44363878 44363918 -99918571 + Alu SINE Alu 1 40 -260 1049 128 20 0 chr12 44363918 44364066 -99918423 - AluJb SINE Alu -161 151 1 2194 130 6 12 chr12 44364467 44364835 -99917654 + L1PA16 LINE L1 5806 6171 0 869 173 39 0 chr12 44364844 44365000 -99917489 + MLT1A1 LTR MaLR 147 308 -57 2130 137 0 7 chr12 44365012 44365319 -99917170 - AluSx SINE Alu -7 305 1 262 323 10 21 chr12 44365390 44365486 -99917003 + MLT1L LTR MaLR 194 288 -327 2202 124 3 0 chr12 44365499 44365797 -99916692 + AluSx SINE Alu 1 299 -13 404 310 82 16 chr12 44365844 44366028 -99916461 + MLT1J LTR MaLR 224 419 -92 2221 105 3 22 chr12 44366523 44366838 -99915651 - AluSq SINE Alu -4 309 1 276 83 0 50 chr12 44366840 44366900 -99915589 + (TCCC)n Simple_repeat Simple_repeat 1 57 0 1565 157 6 83 chr12 44366900 44367212 -99915277 - AluJb SINE Alu -24 288 1 2097 131 3 0 chr12 44367445 44367742 -99914747 - AluSx SINE Alu -14 298 1 8780 113 106 66 chr12 44367749 44369380 -99913109 - pTR5 LTR ERV1 0 2438 743 22 0 0 0 chr12 44369470 44369492 -99912997 + AT_rich Low_complexity Low_complexity 1 22 0 1717 199 27 66 chr12 44369555 44369685 -99912804 - L1ME1 LINE L1 -4 6162 6028 2435 67 0 17 chr12 44369685 44369985 -99912504 + AluY SINE Alu 1 295 -16 1717 199 27 66 chr12 44369985 44370166 -99912323 - L1ME1 LINE L1 -138 6028 5874 2211 103 0 3 chr12 44370166 44370457 -99912032 - AluSq SINE Alu -23 290 1 1717 199 27 66 chr12 44370457 44370631 -99911858 - L1ME1 LINE L1 -292 5874 5695 1862 150 89 49 chr12 44370635 44371041 -99911448 + MSTB1 LTR MaLR 2 423 -9 2072 114 40 0 chr12 44371251 44371549 -99910940 + AluSx SINE Alu 1 310 -2 1699 178 14 11 chr12 44372853 44373139 -99909350 + AluJb SINE Alu 1 287 -25 828 100 0 0 chr12 44373139 44373259 -99909230 + (GGAA)n Simple_repeat Simple_repeat 3 122 0 497 132 66 0 chr12 44373443 44373539 -99908950 - MER5A DNA MER1_type -80 109 6 5184 59 14 0 chr12 44373678 44374326 -99908163 + L1PA8 LINE L1 5516 6172 0 346 148 272 0 chr12 44374384 44374465 -99908024 - MLT1F LTR MaLR 0 542 440 2016 142 3 10 chr12 44374469 44374780 -99907709 + AluSx SINE Alu 1 309 -3 1061 299 76 25 chr12 44374823 44375191 -99907298 - MLT1E LTR MaLR -91 502 116 2259 126 7 0 chr12 44375192 44375493 -99906996 - AluSx SINE Alu -9 303 1 933 207 0 0 chr12 44376026 44376195 -99906294 + AluJb SINE Alu 136 304 -8 2109 115 11 0 chr12 44376722 44377008 -99905481 + AluSp SINE Alu 6 294 -19 26 0 0 0 chr12 44378165 44378191 -99904298 + AT_rich Low_complexity Low_complexity 1 26 0 181 200 273 0 chr12 44378265 44378320 -99904169 + MIR SINE MIR 172 241 -21 2012 142 3 0 chr12 44378328 44378617 -99903872 - AluSx SINE Alu -22 290 1 2019 141 0 3 chr12 44378622 44378912 -99903577 - AluJb SINE Alu -23 289 1 21 36 0 0 chr12 44378921 44378949 -99903540 + AT_rich Low_complexity Low_complexity 1 28 0 315 49 0 0 chr12 44379409 44379450 -99903039 + (A)n Simple_repeat Simple_repeat 1 41 0 1648 161 32 18 chr12 44380437 44380763 -99901726 + AluJo SINE Alu 1 330 0 2628 31 0 46 chr12 44381221 44381544 -99900945 - AluY SINE Alu -2 309 2 416 246 107 16 chr12 44381777 44381899 -99900590 + MIR SINE MIR 95 227 -35 21 57 0 0 chr12 44384175 44384210 -99898279 + AT_rich Low_complexity Low_complexity 1 35 0 213 245 19 0 chr12 44384484 44384537 -99897952 + CT-rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr12 44385046 44385071 -99897418 + AT_rich Low_complexity Low_complexity 1 25 0 225 94 0 0 chr12 44385392 44385424 -99897065 + (A)n Simple_repeat Simple_repeat 1 32 0 218 256 0 0 chr12 44385451 44385494 -99896995 + MIR SINE MIR 203 245 -17 1684 201 0 7 chr12 44386021 44386309 -99896180 - AluJo SINE Alu -25 287 2 1982 160 3 0 chr12 44386508 44386808 -99895681 + AluJo SINE Alu 2 302 -10 952 279 66 43 chr12 44386978 44387373 -99895116 - MLT1H1 LTR MaLR -158 409 1 2043 113 33 13 chr12 44387525 44387825 -99894664 + AluSx SINE Alu 1 306 -6 386 300 66 32 chr12 44387829 44387869 -99894620 + L1MDa LINE L1 1816 1853 -4730 231 36 0 0 chr12 44387869 44387897 -99894592 + (TAA)n Simple_repeat Simple_repeat 1 28 0 386 300 66 32 chr12 44387897 44388115 -99894374 + L1MDa LINE L1 1853 2148 -4435 2112 78 4 4 chr12 44388224 44388492 -99893997 + AluSp SINE Alu 38 305 -8 1206 115 0 22 chr12 44388492 44388674 -99893815 + AluSg/x SINE Alu 132 309 -1 2021 190 40 57 chr12 44388724 44388802 -99893687 + L1M4 LINE L1 4822 4900 -1246 2032 121 0 13 chr12 44388802 44389107 -99893382 - AluSx SINE Alu -10 302 2 2021 190 40 57 chr12 44389107 44389219 -99893270 + L1M4 LINE L1 4900 5012 -1134 1878 140 0 7 chr12 44389219 44389531 -99892958 + AluSx SINE Alu 1 310 0 2021 190 40 57 chr12 44389531 44389833 -99892656 + L1M4 LINE L1 5012 5308 -838 2179 102 0 52 chr12 44389833 44390158 -99892331 + AluSc SINE Alu 1 308 -1 261 209 0 15 chr12 44390162 44390229 -99892260 - L1MB8 LINE L1 -41 6137 6072 * 623 222 4 146 chr12 44390228 44390467 -99892022 - L1MB8 LINE L1 -421 5745 5541 275 163 0 0 chr12 44390480 44390529 -99891960 + L1MB7 LINE L1 6127 6175 -9 1481 158 72 7 chr12 44390532 44390811 -99891678 + AluJo SINE Alu 3 299 -13 31 0 0 0 chr12 44390943 44390974 -99891515 + AT_rich Low_complexity Low_complexity 1 31 0 1716 178 3 0 chr12 44390981 44391267 -99891222 - AluJb SINE Alu -25 287 1 2247 97 7 3 chr12 44391294 44391602 -99890887 + AluY SINE Alu 1 309 -2 314 214 124 11 chr12 44391609 44391698 -99890791 + L1MDa LINE L1 2498 2596 -4125 776 225 133 8 chr12 44391702 44391942 -99890547 + LTR41 LTR ERVL 8 277 -496 397 278 63 54 chr12 44391943 44392148 -99890341 + LTR41 LTR ERVL 425 631 -142 828 166 33 7 chr12 44392148 44392299 -99890190 - FRAM SINE Alu -10 166 12 286 154 26 64 chr12 44392455 44392533 -99889956 + LTR41 LTR ERVL 693 767 -6 1983 252 127 34 chr12 44392536 44393024 -99889465 + L1MDa LINE L1 2547 2988 -3552 2328 106 3 0 chr12 44393024 44393335 -99889154 - AluSx SINE Alu 0 312 1 1983 252 127 34 chr12 44393335 44394037 -99888452 + L1MDa LINE L1 2988 3848 -2692 1767 159 54 7 chr12 44394038 44394334 -99888155 + AluJb SINE Alu 1 310 -2 330 87 0 0 chr12 44394334 44394380 -99888109 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 305 366 30 8 chr12 44394389 44394523 -99887966 + L1MDa LINE L1 3840 3976 -2564 284 177 30 0 chr12 44394659 44394725 -99887764 - AluSp/q SINE Alu -8 295 237 1517 189 59 30 chr12 44394738 44395077 -99887412 - MLT1A2 LTR MaLR -25 349 1 345 214 223 0 chr12 44395096 44395208 -99887281 + LTR50 LTR ERVL 1 137 -658 204 97 0 0 chr12 44395267 44395298 -99887191 + (TG)n Simple_repeat Simple_repeat 2 32 0 1996 111 38 10 chr12 44395461 44395750 -99886739 + AluSq SINE Alu 1 297 -16 2132 118 0 0 chr12 44395752 44396039 -99886450 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr12 44396043 44396080 -99886409 + AT_rich Low_complexity Low_complexity 1 37 0 1583 202 10 7 chr12 44396089 44396381 -99886108 + AluJo SINE Alu 1 293 -19 718 186 7 29 chr12 44396888 44397028 -99885461 + MER47A DNA MER2_type 1 137 -229 2686 198 7 0 chr12 44397114 44397559 -99884930 - HUERS-P2 LTR ERV1 -4177 2914 2467 308 167 10 146 chr12 44397570 44397611 -99884878 - HUERS-P2 LTR ERV1 -3004 84 62 2292 94 0 7 chr12 44397611 44397910 -99884579 - AluY SINE Alu -14 297 1 308 167 10 146 chr12 44397910 44397964 -99884525 - HUERS-P2 LTR ERV1 -3026 62 2 2717 156 83 20 chr12 44397965 44398561 -99883928 - LTR1B LTR ERV1 0 785 140 229 51 51 0 chr12 44398561 44398600 -99883889 + GA-rich Low_complexity Low_complexity 4 44 0 803 277 42 52 chr12 44398600 44398901 -99883588 - L2 LINE L2 -302 3011 2711 2146 109 0 10 chr12 44398901 44399194 -99883295 - AluSq SINE Alu -23 290 1 803 277 42 52 chr12 44399194 44399249 -99883240 - L2 LINE L2 -602 2711 2657 2212 103 0 31 chr12 44399468 44399788 -99882701 + AluSg SINE Alu 1 310 0 21 71 0 0 chr12 44399929 44399971 -99882518 + AT_rich Low_complexity Low_complexity 1 42 0 385 261 165 5 chr12 44400142 44400330 -99882159 + HAL1 LINE L1 1988 2205 -302 21 57 0 0 chr12 44400520 44400555 -99881934 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr12 44400831 44400861 -99881628 + AT_rich Low_complexity Low_complexity 1 30 0 1998 117 0 69 chr12 44402130 44402447 -99880042 + AluSp SINE Alu 1 295 -18 1632 154 4 7 chr12 44402560 44402833 -99879656 + AluSx SINE Alu 40 311 -1 573 125 100 45 chr12 44402895 44403015 -99879474 + MER33 DNA MER1_type 1 121 -110 240 200 0 0 chr12 44403015 44403055 -99879434 + MER33 DNA MER1_type 285 324 0 23 33 0 0 chr12 44403467 44403497 -99878992 + AT_rich Low_complexity Low_complexity 1 30 0 2114 131 0 16 chr12 44403938 44404252 -99878237 - AluSx SINE Alu -3 309 1 1562 183 27 20 chr12 44404777 44405078 -99877411 + AluJo SINE Alu 1 303 -9 772 172 8 8 chr12 44406200 44406328 -99876161 + FLAM_A SINE Alu 1 128 -5 1123 180 45 79 chr12 44406497 44406906 -99875583 + L1MC4 LINE L1 6730 7178 -710 236 261 239 46 chr12 44407724 44407854 -99874635 - L2 LINE L2 -1 3271 3117 939 305 38 39 chr12 44408159 44408296 -99874193 + L2 LINE L2 2520 2656 -616 1832 125 13 39 chr12 44408296 44408601 -99873888 - AluSx SINE Alu -15 297 1 939 305 38 39 chr12 44408601 44409026 -99873463 + L2 LINE L2 2656 3084 -188 809 243 87 0 chr12 44409146 44409352 -99873137 + MIR SINE MIR 20 243 -19 307 330 0 11 chr12 44411104 44411192 -99871297 + L2 LINE L2 2723 2809 -505 410 307 42 52 chr12 44411225 44411417 -99871072 + L2 LINE L2 2951 3140 -173 924 146 0 0 chr12 44411479 44411616 -99870873 - AluJb SINE Alu -8 304 168 852 156 29 40 chr12 44411622 44411795 -99870694 + AluJb SINE Alu 141 311 -1 2265 114 3 0 chr12 44412000 44412299 -99870190 - AluSq SINE Alu -13 300 1 1407 165 172 23 chr12 44412776 44413079 -99869410 - MER7A DNA MER2_type 0 346 1 189 0 0 0 chr12 44414437 44414458 -99868031 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 567 322 77 54 chr12 44415262 44415653 -99866836 + L2 LINE L2 2870 3269 -3 600 266 31 53 chr12 44415715 44415941 -99866548 - Charlie8 DNA MER1_type -2193 224 4 2025 144 0 13 chr12 44416558 44416864 -99865625 - AluSx SINE Alu -10 302 1 2406 65 0 13 chr12 44416945 44417255 -99865234 - AluY SINE Alu -5 306 1 212 239 155 0 chr12 44417308 44417379 -99865110 - L2 LINE L2 -22 3291 3210 3818 187 16 50 chr12 44417628 44418551 -99863938 - LTR5 LTR ERVK 0 969 78 2326 91 0 7 chr12 44418553 44418861 -99863628 - AluSc SINE Alu -3 306 1 515 145 12 0 chr12 44418864 44418947 -99863542 - LTR5 LTR ERVK -885 84 1 949 105 0 0 chr12 44419548 44419681 -99862808 + AluSc SINE Alu 174 306 -3 746 233 93 67 chr12 44419681 44419822 -99862667 - L2 LINE L2 -690 2624 2488 2053 119 3 23 chr12 44419822 44420125 -99862364 + AluSg SINE Alu 1 297 -13 746 233 93 67 chr12 44420125 44420184 -99862305 - L2 LINE L2 -826 2488 2432 1727 171 0 7 chr12 44420184 44420470 -99862019 + AluJo SINE Alu 1 284 -28 746 233 93 67 chr12 44420470 44420581 -99861908 - L2 LINE L2 -882 2432 2304 279 0 0 0 chr12 44420770 44420801 -99861688 + (TA)n Simple_repeat Simple_repeat 1 31 0 1897 139 3 10 chr12 44420801 44421103 -99861386 - AluSx SINE Alu -12 300 1 36 33 0 16 chr12 44421184 44421207 -99861282 + AT_rich Low_complexity Low_complexity 1 23 -37 374 96 110 14 chr12 44421207 44421275 -99861214 - L1PB4 LINE L1 -3 6153 6078 2266 89 13 0 chr12 44421275 44421577 -99860912 - AluSp SINE Alu -7 306 1 36 33 0 16 chr12 44421581 44421618 -99860871 + AT_rich Low_complexity Low_complexity 23 60 0 643 204 140 0 chr12 44421697 44421854 -99860635 + MIR SINE MIR 68 246 -16 2349 98 16 0 chr12 44422320 44422668 -99859821 - AluSx SINE Alu 0 355 3 659 265 102 14 chr12 44422822 44423140 -99859349 + MLT1K LTR MaLR 93 514 -74 23 0 0 0 chr12 44423290 44423313 -99859176 + AT_rich Low_complexity Low_complexity 1 23 0 1056 216 113 64 chr12 44423319 44423601 -99858888 - AluJo SINE Alu -5 297 2 2290 106 6 3 chr12 44423865 44424177 -99858312 + AluSq SINE Alu 1 313 0 2278 96 0 0 chr12 44424187 44424480 -99858009 + AluSc SINE Alu 1 293 -16 470 265 163 35 chr12 44424552 44424809 -99857680 - HAL1 LINE L1 -1581 926 637 1633 117 41 38 chr12 44424995 44425036 -99857453 - L1MB4 LINE L1 0 6180 6141 1965 140 3 3 chr12 44425036 44425328 -99857161 - AluSx SINE Alu -20 292 1 1633 117 41 38 chr12 44425328 44425576 -99856913 - L1MB4 LINE L1 -39 6141 5890 210 301 39 48 chr12 44425608 44425711 -99856778 - MIR SINE MIR -152 110 9 2147 127 0 3 chr12 44425899 44426206 -99856283 - AluSx SINE Alu -6 306 1 355 253 134 30 chr12 44426229 44426431 -99856058 - L1ME LINE L1 -422 5699 5477 303 178 167 33 chr12 44426546 44426636 -99855853 - AluJo SINE Alu -110 192 91 1087 187 24 5 chr12 44427289 44427498 -99854991 + AluJo SINE Alu 92 304 -8 713 255 80 71 chr12 44428633 44428746 -99853743 - L1MC/D LINE L1 -2166 5642 5532 2611 65 0 0 chr12 44428746 44429054 -99853435 - AluY SINE Alu -3 308 1 713 255 80 71 chr12 44429054 44429265 -99853224 - L1MC/D LINE L1 -2276 5532 5315 467 228 261 17 chr12 44430529 44430709 -99851780 + MER58A DNA MER1_type 1 224 0 22 0 0 0 chr12 44431385 44431407 -99851082 + AT_rich Low_complexity Low_complexity 1 22 0 225 294 118 0 chr12 44432302 44432387 -99850102 + L2 LINE L2 3215 3309 -4 300 292 42 57 chr12 44432677 44432869 -99849620 + L1M4 LINE L1 4471 4659 -1487 562 136 0 0 chr12 44432948 44433036 -99849453 - AluSp/q SINE Alu 0 313 226 1906 109 62 0 chr12 44433036 44433293 -99849196 - AluSq SINE Alu -40 273 1 296 120 40 0 chr12 44433293 44433343 -99849146 - Alu SINE Alu -5 297 246 1746 130 26 68 chr12 44433295 44433449 -99849040 - AluSx SINE Alu -17 295 136 297 0 0 0 chr12 44433449 44433482 -99849007 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2144 121 0 0 chr12 44433483 44433773 -99848716 - AluSx SINE Alu -14 298 9 1746 130 26 68 chr12 44433773 44433924 -99848565 - AluSx SINE Alu -175 137 1 463 305 45 13 chr12 44434412 44434566 -99847923 + MER5B DNA MER1_type 1 159 -19 1370 194 58 26 chr12 44435216 44435598 -99846891 - Charlie4a DNA MER1_type -4 504 111 1915 151 0 16 chr12 44435722 44436027 -99846462 + AluJb SINE Alu 1 300 -12 1094 238 170 15 chr12 44436089 44436500 -99845989 + L1ME3A LINE L1 5682 6156 -14 2261 100 13 7 chr12 44436666 44436976 -99845513 - AluSx SINE Alu 0 312 1 2351 57 3 0 chr12 44437313 44437616 -99844873 - AluY SINE Alu 0 306 3 294 29 0 0 chr12 44437927 44437962 -99844527 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 751 218 7 0 chr12 44437974 44438116 -99844373 - FRAM SINE Alu -33 143 1 232 250 33 50 chr12 44439107 44439227 -99843262 - L1MC4 LINE L1 -60 7982 7865 392 219 67 48 chr12 44439806 44439911 -99842578 - L2 LINE L2 -12 3301 3195 461 225 22 36 chr12 44440083 44440221 -99842268 - L1MC5 LINE L1 -120 7841 7706 2158 133 0 7 chr12 44440406 44440708 -99841781 - AluSx SINE Alu -12 300 1 26 88 0 0 chr12 44441290 44441358 -99841131 + AT_rich Low_complexity Low_complexity 1 68 0 22 70 0 0 chr12 44441599 44441642 -99840847 + AT_rich Low_complexity Low_complexity 1 43 0 3456 197 24 31 chr12 44441703 44442580 -99839909 - L1MA9 LINE L1 -76 6236 5366 747 194 21 7 chr12 44442603 44442747 -99839742 - FRAM SINE Alu -30 146 1 325 161 2 0 chr12 44442914 44442988 -99839501 - L1MA9 LINE L1 -792 5376 5302 2087 135 0 0 chr12 44443195 44443483 -99839006 + AluSx SINE Alu 1 288 -24 1995 134 3 38 chr12 44443799 44444119 -99838370 - AluSx SINE Alu -3 309 1 296 360 0 0 chr12 44444251 44444337 -99838152 + L3 LINE CR1 1377 1462 -115 483 226 32 16 chr12 44444914 44445038 -99837451 - MIR SINE MIR -4 258 133 9069 52 9 151 chr12 44445097 44446713 -99835776 - SVA Other Other 0 1386 1 22 35 0 0 chr12 44447790 44447819 -99834670 + AT_rich Low_complexity Low_complexity 1 29 0 2064 103 0 72 chr12 44448110 44448430 -99834059 - AluSx SINE Alu -15 297 1 750 130 0 0 chr12 44448641 44448749 -99833740 - AluY SINE Alu -203 108 1 676 195 0 0 chr12 44448769 44448882 -99833607 + FLAM_C SINE Alu 3 115 -28 2032 125 0 17 chr12 44450535 44450830 -99831659 - AluSx SINE Alu -22 290 1 297 225 8 75 chr12 44450888 44451008 -99831481 + L2 LINE L2 3052 3163 -150 1159 137 0 0 chr12 44451015 44451183 -99831306 - AluSg/x SINE Alu -15 295 128 592 114 0 0 chr12 44451185 44451273 -99831216 - Tigger1 DNA MER2_type -1322 1096 1009 261 57 0 0 chr12 44451305 44451340 -99831149 + (TTA)n Simple_repeat Simple_repeat 3 37 0 2007 103 15 4 chr12 44451344 44451615 -99830874 - AluSq SINE Alu -37 276 3 542 227 85 43 chr12 44451626 44451767 -99830722 + L2 LINE L2 3163 3309 -4 890 196 0 13 chr12 44451775 44451933 -99830556 + FAM SINE Alu 16 171 -14 22 0 0 0 chr12 44452043 44452065 -99830424 + AT_rich Low_complexity Low_complexity 1 22 0 2022 131 0 3 chr12 44452089 44452372 -99830117 + AluSq SINE Alu 22 303 -10 426 223 175 24 chr12 44453053 44453219 -99829270 - HAL1 LINE L1 -5 2502 2312 477 0 0 0 chr12 44453242 44453295 -99829194 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1574 158 39 25 chr12 44453296 44453580 -99828909 - AluSx SINE Alu -24 288 1 2247 78 27 7 chr12 44453595 44453888 -99828601 - AluSq SINE Alu -14 299 1 2084 220 141 78 chr12 44453940 44454482 -99828007 - HAL1 LINE L1 -831 1676 1170 2400 79 0 3 chr12 44454482 44454787 -99827702 - AluY SINE Alu -7 304 1 2084 220 141 78 chr12 44454787 44455412 -99827077 - HAL1 LINE L1 -1337 1170 435 631 286 40 36 chr12 44455416 44455664 -99826825 - HAL1 LINE L1 -2242 265 17 2493 79 0 0 chr12 44455664 44455969 -99826520 - AluY SINE Alu -6 305 1 1286 171 0 0 chr12 44456502 44456701 -99825788 - AluJb SINE Alu -113 199 1 2215 119 3 3 chr12 44457542 44457853 -99824636 - AluSx SINE Alu -1 311 1 781 226 6 0 chr12 44458167 44458326 -99824163 - FRAM SINE Alu -4 162 3 563 309 26 11 chr12 44458717 44458908 -99823581 + MIR SINE MIR 28 221 -41 2255 115 0 16 chr12 44459245 44459558 -99822931 + AluSx SINE Alu 1 308 -4 25 51 0 0 chr12 44459583 44459622 -99822867 + AT_rich Low_complexity Low_complexity 1 39 0 2044 122 0 3 chr12 44459782 44460068 -99822421 + AluJb SINE Alu 9 293 -19 378 0 0 0 chr12 44460286 44460328 -99822161 + (TG)n Simple_repeat Simple_repeat 2 43 0 2242 101 7 3 chr12 44460333 44460629 -99821860 - AluSq SINE Alu -12 301 5 2311 101 0 22 chr12 44461804 44462120 -99820369 + AluSc SINE Alu 1 309 0 516 232 0 0 chr12 44462723 44462874 -99819615 + (TA)n Simple_repeat Simple_repeat 2 152 0 1905 161 0 11 chr12 44462878 44463192 -99819297 - AluJo SINE Alu 0 311 1 22 0 0 0 chr12 44463199 44463221 -99819268 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 44463823 44463845 -99818644 + AT_rich Low_complexity Low_complexity 1 22 0 2242 107 3 0 chr12 44465442 44465751 -99816738 + AluY SINE Alu 1 310 -1 832 234 10 50 chr12 44466048 44466347 -99816142 - AluSx SINE Alu -15 287 1 308 203 25 34 chr12 44466356 44466474 -99816015 + T-rich Low_complexity Low_complexity 4 120 0 316 79 127 16 chr12 44468310 44468373 -99814116 - MADE1 DNA Mariner -3 77 8 241 226 49 67 chr12 44468436 44468600 -99813889 + L1ME4a LINE L1 5876 6036 -85 1169 225 21 6 chr12 44468630 44468960 -99813529 - L1MD3 LINE L1 0 7808 7479 1566 192 7 17 chr12 44469408 44469710 -99812779 + AluSx SINE Alu 3 301 -11 679 232 113 69 chr12 44469745 44470038 -99812451 - L1MC4 LINE L1 -302 7740 7419 1991 117 3 78 chr12 44470038 44470372 -99812117 - AluSg SINE Alu -1 309 1 679 232 113 69 chr12 44470372 44470530 -99811959 - L1MC4 LINE L1 -623 7419 7269 10278 116 36 17 chr12 44470689 44470744 -99811745 - Tigger1 DNA MER2_type -675 1743 1691 2136 98 10 16 chr12 44470744 44471050 -99811439 - AluSx SINE Alu -8 304 1 10278 116 36 17 chr12 44471050 44472422 -99810067 - Tigger1 DNA MER2_type -727 1691 276 2424 63 7 13 chr12 44472422 44472725 -99809764 + AluY SINE Alu 1 301 -10 10278 116 36 17 chr12 44472725 44473004 -99809485 - Tigger1 DNA MER2_type -2142 276 4 575 199 22 52 chr12 44473168 44473304 -99809185 - AluJo SINE Alu -178 134 3 1663 170 13 13 chr12 44473319 44473631 -99808858 - AluJb SINE Alu 0 312 1 730 174 9 0 chr12 44473660 44473775 -99808714 + AluJb SINE Alu 3 118 -194 190 359 97 21 chr12 44473960 44474105 -99808384 + L2 LINE L2 2943 3098 -174 433 307 166 0 chr12 44474273 44474478 -99808011 - MIR SINE MIR -13 249 11 1856 129 42 0 chr12 44474584 44474870 -99807619 - AluSx SINE Alu -14 298 1 558 0 0 0 chr12 44475357 44475419 -99807070 + (TTTC)n Simple_repeat Simple_repeat 1 62 0 21 0 0 0 chr12 44475856 44475877 -99806612 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 44476318 44476347 -99806142 + AT_rich Low_complexity Low_complexity 1 29 0 388 331 45 25 chr12 44476567 44476809 -99805680 - L3 LINE CR1 -197 1380 1134 454 312 208 33 chr12 44476846 44477480 -99805009 - L3 LINE CR1 -608 969 225 225 333 35 0 chr12 44478190 44478247 -99804242 - L2 LINE L2 -78 3194 3136 260 182 261 11 chr12 44480246 44480334 -99802155 - MLT1H LTR MaLR -24 525 416 509 259 106 37 chr12 44480452 44480641 -99801848 + MER63A DNA MER1_type 1 202 -8 2193 103 6 16 chr12 44480963 44481274 -99801215 + AluSg SINE Alu 1 308 -2 983 214 42 23 chr12 44483387 44483602 -99798887 - MER20 DNA MER1_type 0 219 1 200 234 85 0 chr12 44484164 44484211 -99798278 - L2 LINE L2 -1 3312 3262 1642 189 17 24 chr12 44484928 44484981 -99797508 + AluJo SINE Alu 1 53 -259 3950 191 25 49 chr12 44484981 44485974 -99796515 + LTR5 LTR ERVK 1 969 0 1642 189 17 24 chr12 44485974 44486217 -99796272 + AluJo SINE Alu 53 295 -17 2142 103 0 42 chr12 44486219 44486353 -99796136 + AluSg SINE Alu 1 139 -171 2304 103 0 6 chr12 44486353 44486664 -99795825 + AluSc SINE Alu 1 309 0 2142 103 0 42 chr12 44486664 44486841 -99795648 + AluSg SINE Alu 139 299 -11 1273 93 77 0 chr12 44487859 44488042 -99794447 - MER30 DNA MER1_type -33 197 1 909 118 0 76 chr12 44488084 44488228 -99794261 - FLAM_C SINE Alu 0 133 1 198 237 119 0 chr12 44488313 44488372 -99794117 - MIR SINE MIR -105 103 38 2126 99 0 18 chr12 44488522 44488806 -99793683 - AluSx SINE Alu -33 279 1 1948 124 4 0 chr12 44489197 44489471 -99793018 + AluSx SINE Alu 1 275 -37 227 289 189 0 chr12 44489498 44489588 -99792901 + MIR SINE MIR 46 152 -110 464 362 9 29 chr12 44490082 44490292 -99792197 - MIR SINE MIR -33 229 24 785 93 0 0 chr12 44490438 44490535 -99791954 - AluY SINE Alu -214 97 1 754 167 0 62 chr12 44490555 44490699 -99791790 + FLAM_C SINE Alu 3 137 -6 1964 139 0 17 chr12 44492322 44492617 -99789872 - AluSx SINE Alu -22 290 1 200 113 16 161 chr12 44492802 44492864 -99789625 - L2 LINE L2 0 3313 3261 1963 120 0 63 chr12 44492879 44493195 -99789294 + AluJb SINE Alu 1 296 -16 470 237 145 60 chr12 44493247 44493496 -99788993 + HAL1 LINE L1 2238 2507 0 2411 123 35 90 chr12 44494011 44494362 -99788127 + Tigger2a DNA MER2_type 3 372 -2336 2353 75 3 0 chr12 44494362 44494654 -99787835 + AluY SINE Alu 1 293 -18 2411 123 35 90 chr12 44494654 44494686 -99787803 + Tigger2a DNA MER2_type 372 361 -2347 830 178 0 0 chr12 44494686 44494815 -99787674 + FLAM_A SINE Alu 1 129 -4 2411 123 35 90 chr12 44494815 44494887 -99787602 + Tigger2a DNA MER2_type 360 434 0 257 273 146 42 chr12 44494887 44494975 -99787514 + L1MC5 LINE L1 7265 7343 -618 2022 201 8 16 chr12 44494975 44495343 -99787146 - MLT1A1 LTR MaLR 0 365 1 257 273 146 42 chr12 44495343 44495419 -99787070 + L1MC5 LINE L1 7343 7446 -515 2251 118 0 0 chr12 44495527 44495814 -99786675 - AluSx SINE Alu -25 287 1 221 306 51 41 chr12 44496059 44496157 -99786332 + MIR3 SINE MIR 60 158 -50 2194 130 10 0 chr12 44496546 44496847 -99785642 + AluJb SINE Alu 3 306 -6 2164 112 7 0 chr12 44497321 44497607 -99784882 + AluSq SINE Alu 1 288 -25 406 281 127 48 chr12 44497668 44497896 -99784593 - MIR SINE MIR 0 262 17 2557 54 0 3 chr12 44498698 44498996 -99783493 - AluY SINE Alu -14 297 1 22 35 0 0 chr12 44499154 44499183 -99783306 + AT_rich Low_complexity Low_complexity 1 29 0 285 291 152 57 chr12 44499620 44499778 -99782711 + MER5A DNA MER1_type 17 189 0 733 220 132 16 chr12 44499817 44499999 -99782490 + MER3 DNA MER1_type 4 206 -3 820 137 26 0 chr12 44500029 44500146 -99782343 - FLAM_C SINE Alu -13 120 1 298 282 64 18 chr12 44500148 44500258 -99782231 + MIR SINE MIR 24 138 -70 391 264 0 0 chr12 44500500 44500587 -99781902 + L2 LINE L2 3186 3272 0 1761 134 9 91 chr12 44500717 44501037 -99781452 + AluJo SINE Alu 1 294 -18 285 297 42 51 chr12 44502219 44502337 -99780152 + L2 LINE L2 3146 3262 -10 1029 160 6 33 chr12 44502363 44502544 -99779945 - FRAM SINE Alu -1 175 1 969 292 146 32 chr12 44502754 44503261 -99779228 - MLT1K LTR MaLR -9 579 15 345 295 268 5 chr12 44503497 44503687 -99778802 + MIR SINE MIR 20 259 -3 615 258 138 39 chr12 44504917 44505154 -99777335 - L1ME4a LINE L1 -19 6102 5890 1676 163 25 31 chr12 44505154 44505270 -99777219 + MER33 DNA MER1_type 1 116 -2469 2641 27 7 0 chr12 44505270 44505567 -99776922 - AluY SINE Alu -12 299 1 1676 163 25 31 chr12 44505567 44505776 -99776713 + MER33 DNA MER1_type 116 324 0 615 258 138 39 chr12 44505776 44505996 -99776493 - L1ME4a LINE L1 -231 5890 5600 1730 191 0 23 chr12 44505996 44506305 -99776184 - AluJo SINE Alu -8 304 3 2471 37 10 7 chr12 44506837 44507134 -99775355 + AluY SINE Alu 1 298 -13 1788 127 72 17 chr12 44507207 44507499 -99774990 + AluSq SINE Alu 1 308 -5 208 211 14 28 chr12 44508045 44508116 -99774373 + CT-rich Low_complexity Low_complexity 3 72 0 300 233 33 33 chr12 44508221 44508311 -99774178 + CT-rich Low_complexity Low_complexity 6 95 0 2331 114 0 0 chr12 44509060 44509367 -99773122 - AluSx SINE Alu -5 307 1 872 84 71 97 chr12 44509865 44510020 -99772469 + MER46B DNA MER2_type 1 26 -210 803 196 0 8 chr12 44510020 44510153 -99772336 + FLAM_C SINE Alu 1 132 -11 1403 140 5 0 chr12 44510171 44510392 -99772097 + MER46B DNA MER2_type 15 236 0 424 294 28 39 chr12 44510573 44510753 -99771736 - MIR SINE MIR -61 201 24 187 274 20 0 chr12 44510989 44511040 -99771449 + L3b LINE CR1 1524 1575 -8 1886 139 0 0 chr12 44511434 44511700 -99770789 - AluSx SINE Alu -12 300 35 207 200 0 0 chr12 44512294 44512339 -99770150 + (TA)n Simple_repeat Simple_repeat 1 45 0 2267 104 3 3 chr12 44512339 44512638 -99769851 - AluSx SINE Alu -13 299 1 22 0 0 0 chr12 44513208 44513230 -99769259 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 44513819 44513842 -99768647 + AT_rich Low_complexity Low_complexity 1 23 0 1651 176 25 0 chr12 44513878 44514156 -99768333 + AluJb SINE Alu 1 285 -27 420 20 0 0 chr12 44514277 44514326 -99768163 + (TA)n Simple_repeat Simple_repeat 2 50 0 235 250 0 0 chr12 44514487 44514531 -99767958 - MIR SINE MIR -116 146 103 194 256 23 0 chr12 44514597 44514640 -99767849 - L2 LINE L2 -13 3259 3216 2257 109 0 25 chr12 44514807 44515127 -99767362 + AluSx SINE Alu 1 312 0 207 100 0 0 chr12 44515389 44515419 -99767070 + (CAT)n Simple_repeat Simple_repeat 1 30 0 659 254 48 75 chr12 44516333 44516523 -99765966 - MIR SINE MIR -1 261 78 4105 177 63 57 chr12 44516523 44517376 -99765113 - MER21B LTR ERV1 -3 860 3 659 254 48 75 chr12 44517376 44517453 -99765036 - MIR SINE MIR -184 78 1 2115 110 7 7 chr12 44517538 44517838 -99764651 + AluSg SINE Alu 2 301 -9 2331 72 0 23 chr12 44518982 44519286 -99763203 + AluY SINE Alu 1 297 -14 26 0 0 0 chr12 44519716 44519742 -99762747 + AT_rich Low_complexity Low_complexity 1 26 0 583 202 46 0 chr12 44519859 44519968 -99762521 + FLAM_A SINE Alu 12 125 -17 2331 94 7 0 chr12 44519973 44520271 -99762218 + AluSq SINE Alu 1 300 -13 360 0 0 0 chr12 44520276 44520316 -99762173 + (CA)n Simple_repeat Simple_repeat 2 41 0 2059 122 0 3 chr12 44520534 44520820 -99761669 - AluJb SINE Alu -19 293 9 25 51 0 0 chr12 44520980 44521019 -99761470 + AT_rich Low_complexity Low_complexity 1 39 0 2263 112 0 16 chr12 44521044 44521357 -99761132 - AluSx SINE Alu -4 308 1 557 309 26 11 chr12 44521694 44521885 -99760604 - MIR SINE MIR -41 221 28 241 135 0 0 chr12 44522070 44522107 -99760382 + MER94 DNA DNA 13 49 -85 881 225 0 0 chr12 44522276 44522436 -99760053 + FRAM SINE Alu 3 162 -4 2199 119 3 3 chr12 44522750 44523060 -99759429 + AluSx SINE Alu 1 310 -2 1257 176 0 0 chr12 44523901 44524100 -99758389 + AluJb SINE Alu 1 199 -113 2545 227 121 75 chr12 44524608 44524633 -99757856 + HAL1 LINE L1 2 24 -2483 2528 78 0 0 chr12 44524633 44524942 -99757547 + AluY SINE Alu 1 309 -2 2545 227 121 75 chr12 44524942 44525817 -99756672 + HAL1 LINE L1 24 1160 -1347 2412 79 0 3 chr12 44525817 44526122 -99756367 + AluY SINE Alu 1 304 -7 2545 227 121 75 chr12 44526122 44526664 -99755825 + HAL1 LINE L1 1160 1676 -831 2275 82 27 3 chr12 44526716 44527008 -99755481 + AluSq SINE Alu 1 299 -14 1563 158 39 25 chr12 44527023 44527307 -99755182 + AluSx SINE Alu 1 288 -24 513 0 0 0 chr12 44527308 44527365 -99755124 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 499 227 184 22 chr12 44527369 44527554 -99754935 + HAL1 LINE L1 2288 2502 -5 2011 131 0 3 chr12 44528235 44528518 -99753971 - AluSq SINE Alu -10 303 22 22 0 0 0 chr12 44528542 44528564 -99753925 + AT_rich Low_complexity Low_complexity 1 22 0 873 196 0 13 chr12 44528674 44528832 -99753657 - FAM SINE Alu -14 171 16 536 227 85 43 chr12 44528840 44528981 -99753508 - L2 LINE L2 -4 3309 3163 2012 103 15 4 chr12 44528992 44529263 -99753226 + AluSq SINE Alu 3 276 -37 234 62 0 0 chr12 44529267 44529299 -99753190 + (TAA)n Simple_repeat Simple_repeat 3 34 0 636 114 0 0 chr12 44529331 44529419 -99753070 + Tigger1 DNA MER2_type 1009 1096 -1322 1159 137 0 0 chr12 44529421 44529589 -99752900 + AluSg/x SINE Alu 130 297 -15 290 225 8 75 chr12 44529596 44529716 -99752773 - L2 LINE L2 -150 3163 3052 2028 125 0 17 chr12 44529774 44530069 -99752420 + AluSx SINE Alu 1 290 -22 754 167 0 62 chr12 44531692 44531836 -99750653 - FLAM_C SINE Alu -6 137 3 2483 60 7 0 chr12 44531856 44532158 -99750331 + AluY SINE Alu 1 304 -7 1779 141 59 3 chr12 44532231 44532521 -99749968 + AluSq SINE Alu 1 306 -7 2198 203 18 0 chr12 44535077 44535471 -99747018 - MER57A LTR ERV1 0 403 3 44214 47 1 3 chr12 44535699 44541605 -99740884 + L1PA4 LINE L1 1 5902 -253 2640 14 0 0 chr12 44541605 44541932 -99740557 + AluYb8 SINE Alu 1 327 0 44214 47 1 3 chr12 44541932 44542186 -99740303 + L1PA4 LINE L1 5902 6155 0 275 221 74 143 chr12 44542277 44542494 -99739995 - L2 LINE L2 -97 3216 3015 1290 148 25 0 chr12 44542559 44542762 -99739727 - MLT1B LTR MaLR 0 390 183 2551 178 62 89 chr12 44542796 44543426 -99739063 - MER21B LTR ERV1 -54 809 197 247 254 27 91 chr12 44543624 44543734 -99738755 - MER21B LTR ERV1 -758 105 3 890 146 0 44 chr12 44543752 44543910 -99738579 - MLT1B LTR MaLR -239 151 1 227 309 72 0 chr12 44544186 44544283 -99738206 + MIR SINE MIR 139 242 -20 899 204 21 5 chr12 44544319 44544505 -99737984 - MER4D LTR ERV1 0 903 715 1449 181 70 0 chr12 44544506 44544777 -99737712 + AluJb SINE Alu 1 290 -22 1274 176 124 22 chr12 44544802 44545069 -99737420 - MER49 LTR ERV1 -629 294 1 2722 133 13 5 chr12 44545612 44546010 -99736479 + MER57A LTR ERV1 1 401 -2 556 341 9 5 chr12 44546430 44546644 -99735845 + L3 LINE CR1 1319 1533 -44 1903 203 20 89 chr12 44546962 44547500 -99734989 + MLT1D LTR MaLR 1 501 -4 376 275 47 81 chr12 44547509 44547891 -99734598 - L1ME4a LINE L1 -17 6104 5736 562 331 80 7 chr12 44548319 44548594 -99733895 - L3 LINE CR1 -38 1539 1245 264 313 184 27 chr12 44549157 44549304 -99733185 + MER117 DNA MER1_type 2 171 -26 377 350 5 32 chr12 44549427 44549613 -99732876 - L3 LINE CR1 -316 1261 1081 2851 10 0 0 chr12 44550309 44550615 -99731874 - AluYa5 SINE Alu -5 306 1 2266 92 0 36 chr12 44551453 44551759 -99730730 - AluSx SINE Alu -17 295 1 288 184 81 58 chr12 44552218 44552305 -99730184 + L2 LINE L2 3225 3313 0 350 337 54 24 chr12 44552610 44552645 -99729844 - MIR SINE MIR -6 256 223 2317 100 0 10 chr12 44552645 44552955 -99729534 - AluSq SINE Alu -6 307 1 350 337 54 24 chr12 44552955 44553124 -99729365 - MIR SINE MIR -39 223 46 314 238 309 16 chr12 44553252 44553378 -99729111 + MER5A DNA MER1_type 26 188 -1 371 307 102 0 chr12 44553975 44554112 -99728377 + MIR SINE MIR 65 215 -47 210 71 0 0 chr12 44554147 44554175 -99728314 + (TTA)n Simple_repeat Simple_repeat 1 28 0 201 121 0 0 chr12 44554724 44554757 -99727732 + (T)n Simple_repeat Simple_repeat 1 33 0 213 193 363 22 chr12 44555839 44555974 -99726515 + MIR3 SINE MIR 15 195 -13 215 330 68 29 chr12 44556050 44556153 -99726336 - L2 LINE L2 -13 3259 3153 1636 177 3 13 chr12 44556275 44556575 -99725914 + AluJo SINE Alu 13 309 -3 1999 122 14 10 chr12 44557529 44557825 -99724664 + AluSx SINE Alu 1 297 -15 394 160 50 101 chr12 44557833 44557952 -99724537 + MER103 DNA DNA 11 123 -43 192 135 0 0 chr12 44558575 44558612 -99723877 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 201 277 300 8 chr12 44558652 44558782 -99723707 - MER5A DNA MER1_type -21 168 1 1833 170 3 35 chr12 44560078 44560262 -99722227 - AluJo SINE Alu 0 312 141 2050 115 3 20 chr12 44560262 44560579 -99721910 - AluSx SINE Alu 0 312 2 1833 170 3 35 chr12 44560579 44560711 -99721778 - AluJo SINE Alu -171 141 6 270 47 0 70 chr12 44560723 44560766 -99721723 + L1MA9 LINE L1 6273 6312 0 420 360 31 28 chr12 44560767 44560927 -99721562 - MLT1K LTR MaLR -153 435 272 2203 171 64 2 chr12 44560927 44561336 -99721153 + MER63B DNA MER1_type 1 434 -2 420 360 31 28 chr12 44561336 44561461 -99721028 - MLT1K LTR MaLR -316 272 149 254 279 0 0 chr12 44561631 44561692 -99720797 + MER94 DNA DNA 40 100 -34 263 299 43 51 chr12 44561704 44561821 -99720668 - MIR SINE MIR -70 138 23 881 236 0 6 chr12 44562022 44562187 -99720302 - FAM SINE Alu -10 165 2 568 251 63 62 chr12 44562226 44562524 -99719965 + L1ME4a LINE L1 5526 5835 -286 231 270 122 88 chr12 44563556 44563595 -99718894 + MIR SINE MIR 49 85 -177 769 176 0 22 chr12 44563595 44563731 -99718758 - FLAM_C SINE Alu 0 133 1 231 270 122 88 chr12 44563731 44563839 -99718650 + MIR SINE MIR 85 201 -61 * 273 232 0 0 chr12 44563820 44563876 -99718613 + L2 LINE L2 3258 3313 0 577 215 21 58 chr12 44563921 44564112 -99718377 + L2 LINE L2 3124 3307 -6 2298 107 0 0 chr12 44564210 44564508 -99717981 + AluSx SINE Alu 1 298 -14 378 244 41 16 chr12 44565011 44565134 -99717355 + L2 LINE L2 3183 3308 -5 2209 75 20 14 chr12 44566070 44566364 -99716125 + AluSx SINE Alu 1 296 -16 262 302 99 42 chr12 44566781 44566973 -99715516 - MIR SINE MIR -51 211 9 21 0 0 0 chr12 44567413 44567434 -99715055 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 44568572 44568593 -99713896 + AT_rich Low_complexity Low_complexity 1 21 0 2058 103 23 23 chr12 44568737 44569038 -99713451 + AluSx SINE Alu 1 301 -11 2099 138 78 39 chr12 44569157 44569569 -99712920 + MER101B LTR ERV1 1 428 -142 1905 132 0 46 chr12 44569578 44569903 -99712586 - AluSg SINE Alu 0 310 1 577 284 243 3 chr12 44570246 44570559 -99711930 + L2 LINE L2 2912 3299 -14 364 222 0 102 chr12 44570783 44570891 -99711598 - MIR3 SINE MIR -39 169 73 2759 150 45 40 chr12 44571160 44571278 -99711211 + LTR49 LTR ERV1 1 117 -478 3614 144 32 80 chr12 44571278 44572000 -99710489 - LTR8 LTR ERV1 0 691 5 2759 150 45 40 chr12 44572000 44572435 -99710054 + LTR49 LTR ERV1 117 557 -38 3877 190 75 3 chr12 44572479 44573190 -99709299 + LTR49-int LTR ERV1 33 794 -5537 3374 104 37 39 chr12 44573193 44573584 -99708905 + MER41A LTR ERV1 19 410 -144 2394 86 10 0 chr12 44573584 44573887 -99708602 - AluSg SINE Alu -4 306 1 3374 104 37 39 chr12 44573887 44574032 -99708457 + MER41A LTR ERV1 410 554 0 2895 175 71 76 chr12 44574058 44574260 -99708229 + LTR49-int LTR ERV1 802 1004 -5327 279 0 0 0 chr12 44574260 44574291 -99708198 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2895 175 71 76 chr12 44574291 44574786 -99707703 + LTR49-int LTR ERV1 1004 1500 -4831 1546 97 87 128 chr12 44574786 44575122 -99707367 + AluSx SINE Alu 1 324 0 2895 175 71 76 chr12 44575122 44576157 -99706332 + LTR49-int LTR ERV1 1500 2723 -3608 831 168 15 0 chr12 44576176 44576307 -99706182 - AluSq/x SINE Alu -179 133 1 19085 132 35 63 chr12 44576307 44580043 -99702446 + LTR49-int LTR ERV1 2696 6329 -2 3159 167 43 29 chr12 44580045 44580632 -99701857 + LTR49 LTR ERV1 1 595 0 428 0 19 0 chr12 44580865 44580917 -99701572 + (CA)n Simple_repeat Simple_repeat 1 53 0 725 128 0 105 chr12 44581353 44581486 -99701003 - FLAM_A SINE Alu -14 119 1 2274 106 3 3 chr12 44581494 44581797 -99700692 - AluSq SINE Alu -10 303 1 183 213 0 43 chr12 44582530 44582577 -99699912 - MER5A DNA MER1_type -82 107 63 1147 170 30 37 chr12 44583331 44583602 -99698887 + pTR5 LTR ERV1 741 1009 -1429 * 4879 111 276 29 chr12 44583584 44584633 -99697856 + pTR5 LTR ERV1 382 2438 0 1761 181 3 3 chr12 44584642 44584940 -99697549 + AluJb SINE Alu 2 299 -13 270 0 0 0 chr12 44585810 44585840 -99696649 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4482 116 19 11 chr12 44586436 44587066 -99695423 - MER41B LTR ERV1 0 635 1 336 250 98 38 chr12 44587208 44587340 -99695149 - L2 LINE L2 -2 3311 3172 211 268 61 49 chr12 44588653 44588735 -99693754 - L2 LINE L2 -54 3218 3136 2528 58 7 3 chr12 44589103 44589413 -99693076 - AluY SINE Alu 0 311 1 375 182 17 21 chr12 44589427 44589528 -99692961 - MIR SINE MIR -62 146 102 874 114 45 0 chr12 44589765 44589897 -99692592 - L1PA10 LINE L1 -6 6162 6025 343 239 103 86 chr12 44589924 44590225 -99692264 + L1ME4a LINE L1 5800 6105 -16 243 246 123 25 chr12 44592664 44592786 -99689703 + L1MC4a LINE L1 6042 6175 -1633 836 144 0 0 chr12 44593072 44593190 -99689299 - FLAM_C SINE Alu -15 118 1 230 246 16 0 chr12 44593244 44593305 -99689184 + (CA)n Simple_repeat Simple_repeat 2 63 0 252 229 0 33 chr12 44593382 44593443 -99689046 - MIR SINE MIR -130 78 20 464 299 87 82 chr12 44593758 44594162 -99688327 + L2 LINE L2 2851 3256 -16 405 287 146 18 chr12 44594644 44594808 -99687681 + MIR3 SINE MIR 20 204 -4 27 29 0 0 chr12 44595286 44595320 -99687169 + AT_rich Low_complexity Low_complexity 1 34 0 180 0 0 0 chr12 44595851 44595871 -99686618 + (T)n Simple_repeat Simple_repeat 1 20 0 365 287 83 0 chr12 44597720 44597828 -99684661 - L2 LINE L2 -22 3291 3175 182 163 0 23 chr12 44598423 44598466 -99684023 + L2 LINE L2 2346 2387 -927 213 296 52 69 chr12 44598513 44598746 -99683743 + L2 LINE L2 2827 3055 -217 2017 125 0 0 chr12 44598853 44599156 -99683333 - AluSx SINE Alu 0 305 3 606 303 88 16 chr12 44599676 44599927 -99682562 - MLT1K LTR MaLR 0 588 320 401 238 66 41 chr12 44599963 44600085 -99682404 + L2 LINE L2 3180 3304 -9 738 249 72 10 chr12 44600135 44600344 -99682145 - MLT1K LTR MaLR -356 232 11 387 292 90 61 chr12 44600369 44600634 -99681855 - L2 LINE L2 -237 3035 2764 2589 153 25 50 chr12 44600986 44601288 -99681201 - MLT1C LTR MaLR 0 467 180 1335 167 3 95 chr12 44601288 44601605 -99680884 - AluJo SINE Alu -24 288 1 2589 153 25 50 chr12 44601605 44601779 -99680710 - MLT1C LTR MaLR -287 180 3 2122 131 3 0 chr12 44601804 44602110 -99680379 + AluSx SINE Alu 1 307 -5 931 160 26 0 chr12 44602115 44602271 -99680218 + FRAM SINE Alu 1 157 -19 484 307 46 7 chr12 44602551 44602704 -99679785 - MIR SINE MIR -72 190 32 180 240 60 40 chr12 44602843 44602893 -99679596 + L2 LINE L2 3245 3295 -18 1955 63 8 16 chr12 44603113 44603368 -99679121 + AluSq SINE Alu 61 313 0 21 0 0 0 chr12 44604563 44604584 -99677905 + AT_rich Low_complexity Low_complexity 1 21 0 332 284 86 110 chr12 44604735 44605190 -99677299 + L1M2 LINE L1 526 969 -5880 237 224 0 0 chr12 44607305 44607363 -99675126 + GA-rich Low_complexity Low_complexity 3 60 0 574 188 111 17 chr12 44608166 44608283 -99674206 + FLAM_A SINE Alu 8 135 -7 270 0 0 0 chr12 44611495 44611525 -99670964 + (CA)n Simple_repeat Simple_repeat 2 31 0 1703 99 13 26 chr12 44611742 44611975 -99670514 + MER30 DNA MER1_type 1 230 0 2323 97 0 7 chr12 44612912 44613211 -99669278 - AluSx SINE Alu -15 297 1 442 217 0 12 chr12 44613379 44613462 -99669027 + MIR3 SINE MIR 79 160 -48 227 347 31 10 chr12 44613511 44613609 -99668880 - MER5B DNA MER1_type -77 101 2 365 136 39 19 chr12 44613692 44613795 -99668694 + CT-rich Low_complexity Low_complexity 4 108 0 322 280 67 0 chr12 44613939 44614014 -99668475 + L2 LINE L2 3174 3253 -19 2150 112 3 10 chr12 44614499 44614795 -99667694 + AluSq SINE Alu 1 294 -19 366 196 32 120 chr12 44615357 44615515 -99666974 + L2 LINE L2 2990 3133 -180 2059 113 3 3 chr12 44615611 44615930 -99666559 + AluSq SINE Alu 1 319 0 201 256 44 33 chr12 44616607 44616697 -99665792 - MIR SINE MIR -50 212 122 308 175 42 150 chr12 44616926 44617046 -99665443 + MIR3 SINE MIR 67 173 -35 367 303 25 110 chr12 44618549 44618912 -99663577 - L2 LINE L2 -9 3263 2932 2381 100 3 0 chr12 44618952 44619261 -99663228 - AluSx SINE Alu -2 310 1 21 36 0 0 chr12 44619739 44619767 -99662722 + AT_rich Low_complexity Low_complexity 1 28 0 772 195 65 0 chr12 44620433 44620587 -99661902 + MER53 DNA DNA 26 189 0 1463 154 135 12 chr12 44620839 44621119 -99661370 + AluJb SINE Alu 2 302 0 22 0 0 0 chr12 44621640 44621662 -99660827 + AT_rich Low_complexity Low_complexity 1 22 0 1622 185 0 17 chr12 44621833 44622120 -99660369 - AluJb SINE Alu -17 295 14 2275 82 0 10 chr12 44622195 44622522 -99659967 - AluSq SINE Alu 0 313 1 21 0 0 0 chr12 44622589 44622610 -99659879 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 44623787 44623810 -99658679 + AT_rich Low_complexity Low_complexity 1 23 0 2280 102 3 3 chr12 44623832 44624137 -99658352 - AluSq SINE Alu -8 305 1 332 279 38 19 chr12 44625528 44625686 -99656803 + L1MC4a LINE L1 5771 5931 -1877 1161 172 0 0 chr12 44625800 44625980 -99656509 + L1PB4 LINE L1 5973 6152 -4 1861 160 3 3 chr12 44626199 44626487 -99656002 + AluJb SINE Alu 1 288 -24 1898 101 4 0 chr12 44626881 44627128 -99655361 - AluSq SINE Alu -65 248 1 256 286 32 0 chr12 44627421 44627484 -99655005 + L2 LINE L2 3202 3266 -6 25 31 0 0 chr12 44627650 44627682 -99654807 + AT_rich Low_complexity Low_complexity 1 32 0 359 289 97 7 chr12 44628022 44628200 -99654289 - MIR SINE MIR -51 157 12 216 339 77 15 chr12 44628268 44628463 -99654026 + L2 LINE L2 2364 2570 -744 2291 98 10 3 chr12 44630042 44630348 -99652141 - AluSq SINE Alu -5 308 1 2309 94 10 7 chr12 44630388 44630696 -99651793 - AluSc SINE Alu 0 309 1 2540 67 0 13 chr12 44630942 44631255 -99651234 - AluY SINE Alu -2 309 1 2194 94 24 0 chr12 44631478 44631765 -99650724 - AluSx SINE Alu -18 294 1 22 0 0 0 chr12 44631775 44631797 -99650692 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 44632267 44632295 -99650194 + AT_rich Low_complexity Low_complexity 1 28 0 2232 120 7 0 chr12 44632463 44632772 -99649717 + AluSx SINE Alu 1 311 -1 450 0 0 0 chr12 44633854 44633904 -99648585 + (TG)n Simple_repeat Simple_repeat 1 50 0 2098 110 14 3 chr12 44634239 44634569 -99647920 + AluSx SINE Alu 1 333 0 780 166 0 65 chr12 44634909 44635048 -99647441 + AluJo SINE Alu 1 130 -172 264 213 0 0 chr12 44635048 44635109 -99647380 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1060 149 0 0 chr12 44635120 44635274 -99647215 + AluJo SINE Alu 129 282 -30 184 231 19 19 chr12 44637331 44637383 -99645106 - L2 LINE L2 -1 3271 3220 594 162 120 17 chr12 44637564 44637681 -99644808 + FLAM_A SINE Alu 1 129 -4 244 159 23 0 chr12 44637781 44637825 -99644664 + L2 LINE L2 3264 3308 -5 409 262 169 35 chr12 44638098 44638270 -99644219 + MIR SINE MIR 20 214 -48 2190 121 0 3 chr12 44639347 44639652 -99642837 - AluSq SINE Alu -9 304 1 2174 115 0 3 chr12 44640546 44640851 -99641638 - AluSq SINE Alu -8 305 2 401 309 56 0 chr12 44640853 44640979 -99641510 - MIR SINE MIR -113 149 17 478 127 0 0 chr12 44641017 44641088 -99641401 - MIR SINE MIR -107 155 85 2511 47 0 7 chr12 44641216 44641512 -99640977 - AluY SINE Alu -17 294 1 1669 109 116 32 chr12 44641570 44641881 -99640608 + MER1B DNA MER1_type 1 337 -2 339 298 99 83 chr12 44642159 44642305 -99640184 - MIR SINE MIR -6 256 103 2123 136 0 3 chr12 44642305 44642613 -99639876 + AluJb SINE Alu 1 307 -5 339 298 99 83 chr12 44642613 44642718 -99639771 - MIR SINE MIR -159 103 1 1191 160 0 0 chr12 44644320 44644495 -99637994 - AluJb SINE Alu -11 301 127 193 359 94 24 chr12 44644675 44644887 -99637602 - L2 LINE L2 -239 3033 2807 2327 108 7 0 chr12 44645527 44645833 -99636656 - AluSx SINE Alu -4 308 1 872 84 71 97 chr12 44646331 44646486 -99636003 + MER46B DNA MER2_type 1 26 -210 803 196 0 8 chr12 44646486 44646619 -99635870 + FLAM_C SINE Alu 1 132 -11 1403 140 5 0 chr12 44646637 44646858 -99635631 + MER46B DNA MER2_type 15 236 0 424 294 28 39 chr12 44647039 44647219 -99635270 - MIR SINE MIR -61 201 24 187 271 21 0 chr12 44647458 44647506 -99634983 + L3 LINE CR1 1521 1569 -8 1886 139 0 0 chr12 44647900 44648166 -99634323 - AluSx SINE Alu -12 300 35 2348 103 0 3 chr12 44648803 44649105 -99633384 - AluSx SINE Alu -11 301 1 200 113 16 161 chr12 44649290 44649352 -99633137 - L2 LINE L2 0 3313 3261 1971 120 0 63 chr12 44649367 44649684 -99632805 + AluJb SINE Alu 1 297 -15 470 237 145 60 chr12 44649736 44649985 -99632504 + HAL1 LINE L1 2238 2507 0 2411 123 35 90 chr12 44650500 44650851 -99631638 + Tigger2a DNA MER2_type 3 372 -2336 2353 75 3 0 chr12 44650851 44651143 -99631346 + AluY SINE Alu 1 293 -18 2411 123 35 90 chr12 44651143 44651175 -99631314 + Tigger2a DNA MER2_type 372 361 -2347 830 178 0 0 chr12 44651175 44651304 -99631185 + FLAM_A SINE Alu 1 129 -4 2411 123 35 90 chr12 44651304 44651376 -99631113 + Tigger2a DNA MER2_type 360 434 0 257 273 146 42 chr12 44651376 44651464 -99631025 + L1MC5 LINE L1 7265 7343 -618 2022 201 8 16 chr12 44651464 44651832 -99630657 - MLT1A1 LTR MaLR 0 365 1 257 273 146 42 chr12 44651832 44651908 -99630581 + L1MC5 LINE L1 7343 7446 -515 2012 134 14 0 chr12 44652016 44652299 -99630190 - AluSx SINE Alu -25 287 1 221 306 51 41 chr12 44652544 44652642 -99629847 + MIR3 SINE MIR 60 158 -50 2209 126 10 0 chr12 44653032 44653333 -99629156 + AluJb SINE Alu 3 306 -6 344 292 67 42 chr12 44653533 44653653 -99628836 - L2 LINE L2 -16 3256 3134 1307 201 10 24 chr12 44653873 44654162 -99628327 - AluSq SINE Alu -28 285 1 250 151 143 111 chr12 44654507 44654633 -99627856 + MIR SINE MIR 61 190 -72 2403 86 0 0 chr12 44655679 44655982 -99626507 - AluSg SINE Alu -7 303 1 269 268 111 0 chr12 44656224 44656329 -99626160 + MIR3 SINE MIR 63 178 -30 219 269 185 46 chr12 44658323 44658431 -99624058 + L2 LINE L2 3137 3259 -13 2346 77 0 0 chr12 44659053 44659338 -99623151 - AluSx SINE Alu -16 296 12 387 90 104 15 chr12 44661506 44661573 -99620916 - MADE1 DNA Mariner 0 80 8 303 230 48 73 chr12 44661636 44661801 -99620688 + L1ME4a LINE L1 5876 6036 -85 1574 213 13 5 chr12 44661829 44662168 -99620321 - L1MD3 LINE L1 -10 7985 7560 1222 134 13 38 chr12 44662195 44662434 -99620055 - AluSq SINE Alu 0 313 81 1706 132 20 24 chr12 44663075 44663370 -99619119 - AluSq SINE Alu -19 294 1 2391 87 0 3 chr12 44663415 44663724 -99618765 + AluSc SINE Alu 2 309 0 1124 152 14 33 chr12 44663730 44663940 -99618549 + AluJo SINE Alu 84 289 -23 515 100 12 12 chr12 44664717 44664797 -99617692 - L1ME2 LINE L1 0 6164 6085 3071 210 42 24 chr12 44664804 44665443 -99617046 + MER82 DNA MER2_type 2 652 -1 2188 101 28 0 chr12 44666507 44666795 -99615694 + AluSx SINE Alu 1 296 -16 1504 102 0 28 chr12 44667096 44667311 -99615178 - AluSq SINE Alu -19 294 86 604 153 56 49 chr12 44667320 44667464 -99615025 + THE1C LTR MaLR 227 371 -4 834 135 55 15 chr12 44667601 44667801 -99614688 + AluSq SINE Alu 2 209 -104 574 102 0 11 chr12 44668630 44668718 -99613771 - L1PB3 LINE L1 -3 6151 6065 2023 130 31 0 chr12 44669201 44669493 -99612996 - AluSx SINE Alu -11 301 1 32 26 0 0 chr12 44669596 44669635 -99612854 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr12 44670413 44670437 -99612052 + AT_rich Low_complexity Low_complexity 1 24 0 2014 130 0 44 chr12 44670438 44670754 -99611735 + AluSx SINE Alu 1 302 -10 671 273 40 16 chr12 44671180 44671429 -99611060 - LTR40b LTR ERVL -57 405 151 1019 277 166 32 chr12 44671622 44672628 -99609861 + L1M4 LINE L1 3903 5043 -1103 2862 117 35 18 chr12 44672719 44673154 -99609335 - L1PB4 LINE L1 -1 6155 5714 1612 179 41 7 chr12 44673378 44673538 -99608951 - AluJo SINE Alu -11 301 125 189 0 0 0 chr12 44673538 44673559 -99608930 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1612 179 41 7 chr12 44673559 44673689 -99608800 - AluJo SINE Alu -187 125 1 230 223 109 92 chr12 44673744 44673928 -99608561 - L1MC/D LINE L1 -2064 5744 5558 22 0 0 0 chr12 44673939 44673961 -99608528 + AT_rich Low_complexity Low_complexity 1 22 0 243 267 114 0 chr12 44673972 44674077 -99608412 - L1MC/D LINE L1 -3082 3064 2948 295 269 202 10 chr12 44674265 44674369 -99608120 - L2 LINE L2 0 3313 3190 2013 148 3 13 chr12 44674808 44675112 -99607377 + AluSx SINE Alu 1 301 -11 1919 225 96 68 chr12 44675147 44675441 -99607048 - L1MC4 LINE L1 -302 7740 7456 2141 96 3 78 chr12 44675441 44675775 -99606714 - AluSg SINE Alu -1 309 1 1919 225 96 68 chr12 44675775 44676017 -99606472 - L1MC4 LINE L1 -586 7456 7222 1612 183 66 31 chr12 44676017 44676367 -99606122 + MLT1A1 LTR MaLR 4 365 0 1919 225 96 68 chr12 44676367 44676602 -99605887 - L1MC4 LINE L1 -820 7222 6943 189 0 0 0 chr12 44676602 44676623 -99605866 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 292 222 22 33 chr12 44676642 44676732 -99605757 - L1MB4 LINE L1 -7 6173 6085 2165 182 46 23 chr12 44676769 44677440 -99605049 - L1MB4 LINE L1 -432 5748 5067 632 243 59 6 chr12 44677441 44677610 -99604879 - L1MC4 LINE L1 -1096 6946 6769 1900 223 70 25 chr12 44677756 44678201 -99604288 + LTR40c LTR ERVL 1 465 0 42 0 0 0 chr12 44678288 44678330 -99604159 + AT_rich Low_complexity Low_complexity 1 42 0 2226 120 0 0 chr12 44678923 44679215 -99603274 + AluSq SINE Alu 1 292 -21 1693 167 28 7 chr12 44679329 44679611 -99602878 + AluJo SINE Alu 1 288 -24 1866 147 17 0 chr12 44679621 44679913 -99602576 + AluSx SINE Alu 1 297 -15 255 276 11 46 chr12 44680551 44680638 -99601851 - MER5A DNA MER1_type -105 84 1 2366 83 10 0 chr12 44681206 44681506 -99600983 - AluSx SINE Alu -9 303 1 818 133 0 44 chr12 44681531 44681666 -99600823 - FLAM_C SINE Alu 0 133 5 32 44 0 29 chr12 44682691 44682728 -99599761 + AT_rich Low_complexity Low_complexity 1 37 -29 2009 121 0 10 chr12 44682728 44683017 -99599472 - AluSx SINE Alu -26 286 1 32 44 0 29 chr12 44683017 44683047 -99599442 + AT_rich Low_complexity Low_complexity 37 66 0 964 245 32 9 chr12 44683964 44684180 -99598309 + MER58A DNA MER1_type 3 223 -1 894 267 23 9 chr12 44684488 44684721 -99597768 - MIR SINE MIR -4 258 30 244 324 140 31 chr12 44684710 44684932 -99597557 + L2 LINE L2 432 677 -2637 * 601 283 28 11 chr12 44685118 44685298 -99597191 - MER5A DNA MER1_type 0 189 7 1886 113 87 4 chr12 44685812 44686087 -99596402 - AluSx SINE Alu -14 298 1 1787 152 20 10 chr12 44686092 44686394 -99596095 - AluJo SINE Alu -7 305 1 1204 202 38 11 chr12 44686601 44686863 -99595626 + MER33 DNA MER1_type 1 269 -55 447 345 156 26 chr12 44687489 44688194 -99594295 + L2 LINE L2 1990 3233 -39 800 196 53 48 chr12 44688872 44689061 -99593428 - MER20 DNA MER1_type 0 219 30 2266 63 6 51 chr12 44689418 44689733 -99592756 - AluY SINE Alu -10 301 1 278 96 19 0 chr12 44690155 44690207 -99592282 - L1MC4 LINE L1 0 8042 7990 2190 105 14 0 chr12 44690295 44690591 -99591898 - AluSg SINE Alu -10 300 1 246 42 62 0 chr12 44690643 44690691 -99591798 + T-rich Low_complexity Low_complexity 3 53 0 214 212 106 15 chr12 44690841 44690907 -99591582 - L2 LINE L2 -6 3266 3195 1643 180 14 18 chr12 44691486 44691769 -99590720 + AluJb SINE Alu 1 282 -30 249 33 0 0 chr12 44691772 44691802 -99590687 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1317 146 46 0 chr12 44691978 44692197 -99590292 - MER30 DNA MER1_type 0 230 2 2173 126 10 0 chr12 44692275 44692584 -99589905 - AluSx SINE Alu 0 312 1 486 0 0 0 chr12 44693070 44693124 -99589365 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr12 44693561 44693582 -99588907 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 44694023 44694052 -99588437 + AT_rich Low_complexity Low_complexity 1 29 0 403 331 45 25 chr12 44694272 44694514 -99587975 - L3 LINE CR1 -197 1380 1134 479 312 208 33 chr12 44694551 44695185 -99587304 - L3 LINE CR1 -608 969 225 224 333 35 0 chr12 44695895 44695952 -99586537 - L2 LINE L2 -78 3194 3136 287 182 261 11 chr12 44697951 44698039 -99584450 - MLT1H LTR MaLR -24 525 416 569 259 106 37 chr12 44698157 44698346 -99584143 + MER63A DNA MER1_type 1 202 -8 2249 103 0 16 chr12 44698670 44698982 -99583507 + AluSg SINE Alu 1 307 -3 894 214 42 23 chr12 44701095 44701310 -99581179 - MER20 DNA MER1_type 0 219 1 202 234 85 0 chr12 44701872 44701919 -99580570 - L2 LINE L2 -1 3312 3262 1634 189 17 24 chr12 44702636 44702689 -99579800 + AluJo SINE Alu 1 53 -259 3877 197 20 44 chr12 44702689 44703682 -99578807 + LTR5 LTR ERVK 1 969 0 1634 189 17 24 chr12 44703682 44703925 -99578564 + AluJo SINE Alu 53 295 -17 2112 102 0 51 chr12 44703927 44704061 -99578428 + AluSg SINE Alu 1 140 -170 2257 104 0 7 chr12 44704061 44704370 -99578119 + AluSc SINE Alu 1 307 -2 2112 102 0 51 chr12 44704370 44704550 -99577939 + AluSg SINE Alu 140 299 -11 1236 93 77 0 chr12 44705573 44705756 -99576733 - MER30 DNA MER1_type -33 197 1 845 118 0 76 chr12 44705797 44705941 -99576548 - FLAM_C SINE Alu 0 133 1 194 237 119 0 chr12 44706026 44706085 -99576404 - MIR SINE MIR -105 103 38 2101 102 0 18 chr12 44706235 44706519 -99575970 - AluSx SINE Alu -33 279 1 1979 120 4 0 chr12 44706910 44707184 -99575305 + AluSx SINE Alu 1 275 -37 235 289 189 0 chr12 44707211 44707301 -99575188 + MIR SINE MIR 46 152 -110 538 349 10 24 chr12 44707795 44708004 -99574485 - MIR SINE MIR -33 229 24 21 36 0 0 chr12 44708236 44708264 -99574225 + AT_rich Low_complexity Low_complexity 1 28 0 180 152 0 0 chr12 44710663 44710696 -99571793 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr12 44711144 44711165 -99571324 + AT_rich Low_complexity Low_complexity 1 21 0 1334 177 45 0 chr12 44711514 44711757 -99570732 + AluJo SINE Alu 43 296 -16 1076 162 19 62 chr12 44711798 44712008 -99570481 + AluJb SINE Alu 99 299 -13 324 123 70 0 chr12 44712542 44712599 -99569890 - MSTB2 LTR MaLR 0 457 397 1563 87 78 26 chr12 44712699 44712930 -99569559 - AluSc SINE Alu -20 289 47 679 100 20 10 chr12 44713503 44713603 -99568886 + U6 snRNA snRNA 4 104 -3 244 241 28 65 chr12 44714237 44714345 -99568144 + L1ME4a LINE L1 5975 6078 -43 196 314 95 30 chr12 44714724 44714893 -99567596 - L2 LINE L2 -1252 2062 1883 373 254 51 65 chr12 44715003 44715141 -99567348 + L2 LINE L2 3165 3300 -13 2830 7 0 0 chr12 44715141 44715447 -99567042 + AluYa5 SINE Alu 1 306 -5 604 161 0 0 chr12 44715533 44715626 -99566863 - AluJ/FLAM SINE Alu -213 99 7 336 48 0 0 chr12 44715715 44715757 -99566732 + (TC)n Simple_repeat Simple_repeat 1 42 0 333 0 0 0 chr12 44715756 44715793 -99566696 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 24 0 0 0 chr12 44716169 44716193 -99566296 + AT_rich Low_complexity Low_complexity 1 24 0 1171 136 199 83 chr12 44716380 44716682 -99565807 + MER1B DNA MER1_type 1 337 0 1647 149 69 14 chr12 44716810 44717098 -99565391 - AluJb SINE Alu -8 304 1 189 278 127 63 chr12 44717416 44717542 -99564947 + MIR3 SINE MIR 54 187 -21 2149 110 0 0 chr12 44719206 44719512 -99562977 + AluSq SINE Alu 1 306 0 2313 100 3 0 chr12 44719707 44720007 -99562482 + AluSg SINE Alu 1 301 -9 1010 269 25 12 chr12 44720831 44721046 -99561443 - L1ME3A LINE L1 -9 6144 5922 2409 74 10 0 chr12 44721046 44721344 -99561145 - AluY SINE Alu -10 301 1 1010 269 25 12 chr12 44721344 44721451 -99561038 - L1ME3A LINE L1 -231 5922 5818 1074 214 140 29 chr12 44721454 44722180 -99560309 - L1ME3A LINE L1 -725 5428 4606 1164 228 166 18 chr12 44722206 44722554 -99559935 - MLT1F1 LTR MaLR -119 448 42 1861 123 13 94 chr12 44722554 44722927 -99559562 + MER2 DNA MER2_type 2 344 0 1164 228 166 18 chr12 44722927 44722977 -99559512 - MLT1F1 LTR MaLR -525 42 1 320 243 56 9 chr12 44722988 44723095 -99559394 - L1ME3A LINE L1 -2896 3233 3122 1020 128 0 32 chr12 44723188 44723344 -99559145 + AluSq/x SINE Alu 1 151 -161 364 94 0 0 chr12 44723353 44723406 -99559083 + MADE1 DNA Mariner 27 79 -1 543 289 88 38 chr12 44723497 44723736 -99558753 + MIR SINE MIR 12 262 0 1555 138 86 43 chr12 44723848 44724173 -99558316 - MER44D DNA MER2_type 0 609 1 21 0 0 0 chr12 44725853 44725874 -99556615 + AT_rich Low_complexity Low_complexity 1 21 0 257 244 24 85 chr12 44725893 44726057 -99556432 - L1ME3A LINE L1 -4840 1289 1136 360 119 0 0 chr12 44726221 44726280 -99556209 - L1PB3 LINE L1 -4 6150 6092 282 122 0 0 chr12 44726287 44726328 -99556161 - LTR3b LTR ERVK 0 500 460 804 184 19 6 chr12 44726329 44726487 -99556002 - LTR3b LTR ERVK -4 496 337 5175 151 39 54 chr12 44726487 44726550 -99555939 - L1PB3 LINE L1 -71 6083 6021 2240 103 3 0 chr12 44726550 44726851 -99555638 + AluSx SINE Alu 1 302 -10 2422 74 0 3 chr12 44726852 44727150 -99555339 + AluSg SINE Alu 1 297 -13 5175 151 39 54 chr12 44727150 44728448 -99554041 - L1PB3 LINE L1 -133 6021 4705 309 51 0 0 chr12 44728448 44728487 -99554002 + (TG)n Simple_repeat Simple_repeat 2 40 0 2086 117 3 3 chr12 44728488 44728778 -99553711 - AluSq SINE Alu -23 290 1 5175 151 39 54 chr12 44728778 44728949 -99553540 - L1PB3 LINE L1 -1449 4705 4533 2219 87 10 0 chr12 44728949 44729247 -99553242 - AluSq SINE Alu -11 302 2 5175 151 39 54 chr12 44729247 44729424 -99553065 - L1PB3 LINE L1 -1621 4533 4355 189 0 0 0 chr12 44729424 44729445 -99553044 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 5175 151 39 54 chr12 44729445 44729721 -99552768 - L1PB3 LINE L1 -1799 4355 4124 514 270 105 47 chr12 44729712 44730075 -99552414 - L1ME3A LINE L1 -5155 964 623 * 2262 107 0 3 chr12 44730075 44730384 -99552105 - AluSg SINE Alu -2 308 1 514 270 105 47 chr12 44730384 44730521 -99551968 - L1ME3A LINE L1 -5496 623 266 203 305 68 0 chr12 44730742 44730801 -99551688 - MIR SINE MIR -89 119 57 250 316 44 26 chr12 44730873 44730987 -99551502 - L2 LINE L2 -260 3053 2938 652 268 43 47 chr12 44731295 44731549 -99550940 - MER21B LTR ERV1 -144 719 467 232 268 14 14 chr12 44731589 44731660 -99550829 - MER21B LTR ERV1 -142 721 651 2040 78 0 4 chr12 44732841 44733109 -99549380 - AluY SINE Alu 0 311 45 22 0 0 0 chr12 44733125 44733147 -99549342 + AT_rich Low_complexity Low_complexity 1 22 0 424 323 68 77 chr12 44733319 44733819 -99548670 + L2 LINE L2 2725 3272 0 309 214 119 12 chr12 44733828 44733912 -99548577 - MIR SINE MIR -45 217 125 283 120 0 0 chr12 44733912 44733962 -99548527 + L1MA7 LINE L1 6242 6291 0 2328 103 0 0 chr12 44734148 44734448 -99548041 - AluSx SINE Alu -12 300 1 1119 139 0 12 chr12 44735386 44735552 -99546937 - AluSg/x SINE Alu -14 298 135 350 193 0 12 chr12 44735556 44735639 -99546850 + CT-rich Low_complexity Low_complexity 3 84 0 225 0 0 0 chr12 44736257 44736282 -99546207 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1965 127 0 4 chr12 44736282 44736557 -99545932 - AluSx SINE Alu -32 280 7 30 27 0 0 chr12 44738234 44738271 -99544218 + AT_rich Low_complexity Low_complexity 1 37 0 2194 125 3 0 chr12 44738595 44738892 -99543597 - AluSx SINE Alu -14 298 1 2194 89 12 49 chr12 44739938 44739956 -99542533 - AluSq SINE Alu 0 313 296 522 0 0 0 chr12 44739956 44740014 -99542475 + (TATG)n Simple_repeat Simple_repeat 3 60 0 2194 89 12 49 chr12 44740014 44740320 -99542169 - AluSq SINE Alu -17 296 1 1812 105 102 44 chr12 44740424 44740719 -99541770 - AluSq SINE Alu -1 312 1 288 310 70 56 chr12 44740759 44740901 -99541588 - MIR SINE MIR -72 190 47 2271 119 0 3 chr12 44741256 44741559 -99540930 + AluSx SINE Alu 1 302 -10 2437 65 0 0 chr12 44741660 44741950 -99540539 + AluY SINE Alu 1 290 -21 844 176 198 5 chr12 44742151 44742338 -99540151 - MER58A DNA MER1_type 0 224 2 2115 110 4 0 chr12 44742577 44742886 -99539603 + AluSp SINE Alu 1 310 0 361 284 101 20 chr12 44746163 44746311 -99536178 - L1MC/D LINE L1 -2182 5626 5467 2280 106 0 10 chr12 44746553 44746865 -99535624 - AluSq SINE Alu -3 310 2 1838 109 106 43 chr12 44747002 44747351 -99535138 - THE1C LTR MaLR -4 371 1 2245 102 6 10 chr12 44747477 44747791 -99534698 - AluSp SINE Alu 0 313 1 2224 108 0 19 chr12 44747823 44748139 -99534350 + AluSg SINE Alu 1 310 0 2136 109 30 3 chr12 44748361 44748663 -99533826 - AluSg SINE Alu 0 310 1 919 20 0 0 chr12 44748947 44749047 -99533442 - HY3 scRNA scRNA -1 100 1 2348 69 14 0 chr12 44749058 44749346 -99533143 - AluSx SINE Alu -20 292 1 461 292 141 0 chr12 44749400 44749585 -99532904 - Charlie8 DNA MER1_type -2206 211 1 1147 121 25 0 chr12 44749705 44749862 -99532627 - AluSx SINE Alu -151 161 1 656 200 0 0 chr12 44749965 44750090 -99532399 + AluSp/q SINE Alu 177 301 -12 21 0 0 0 chr12 44750150 44750171 -99532318 + AT_rich Low_complexity Low_complexity 1 21 0 759 107 0 115 chr12 44750238 44750360 -99532129 - FLAM_C SINE Alu -33 110 3 2099 145 3 0 chr12 44750829 44751140 -99531349 - AluSx SINE Alu 0 312 1 228 298 208 30 chr12 44751388 44751556 -99530933 - MIR3 SINE MIR -10 198 1 2308 101 0 3 chr12 44751672 44751969 -99530520 + AluSq SINE Alu 1 296 -17 864 195 24 24 chr12 44751978 44752147 -99530342 - AluJo SINE Alu -20 292 124 732 155 35 0 chr12 44752286 44752402 -99530087 + AluJb SINE Alu 170 289 -23 327 25 0 0 chr12 44752404 44752444 -99530045 + (CA)n Simple_repeat Simple_repeat 1 40 0 237 276 13 0 chr12 44752730 44752806 -99529683 - MLT1J LTR MaLR -23 488 412 243 264 130 61 chr12 44752883 44753104 -99529385 - MLT1J2 LTR MaLR -183 226 31 420 269 10 6 chr12 44753452 44753575 -99528914 - HERVL LTR ERVL -3810 1844 1751 209 247 225 22 chr12 44753869 44753958 -99528531 - L2 LINE L2 -10 3303 3197 3326 160 136 21 chr12 44754091 44754392 -99528097 - MER44D DNA MER2_type -1882 705 440 1919 114 37 4 chr12 44754392 44754663 -99527826 - AluSx SINE Alu -18 294 15 3326 160 136 21 chr12 44754663 44754993 -99527496 - MER44D DNA MER2_type -2147 440 1 26 0 0 0 chr12 44756512 44756538 -99525951 + AT_rich Low_complexity Low_complexity 1 26 0 1905 196 60 51 chr12 44756602 44757056 -99525433 - LTR22A LTR ERVK 0 458 1 1648 133 0 8 chr12 44757059 44757300 -99525189 - HERVK22 LTR ERVK -4 6833 6595 * 21227 91 14 16 chr12 44757289 44760193 -99522296 - HERVK22 LTR ERVK -1538 5299 2403 6059 129 18 3 chr12 44760204 44761093 -99521396 - HERVK22 LTR ERVK -5932 905 4 2239 194 22 35 chr12 44761096 44761560 -99520929 - LTR22A LTR ERVK 0 458 1 993 104 8 0 chr12 44761939 44762073 -99520416 + AluSq/x SINE Alu 1 135 -178 1216 146 0 5 chr12 44762880 44763065 -99519424 + AluSx SINE Alu 1 184 -128 646 204 9 0 chr12 44763065 44763178 -99519311 + MLT1D LTR MaLR 299 412 -93 777 227 61 0 chr12 44763178 44763376 -99519113 + L1MC2 LINE L1 2680 2889 -3257 * 5060 181 44 83 chr12 44763362 44763944 -99518545 + L1MC2 LINE L1 4239 4842 -1502 1943 99 7 42 chr12 44763944 44764260 -99518229 + AluSx SINE Alu 11 316 0 5060 181 44 83 chr12 44764260 44764857 -99517632 + L1MC2 LINE L1 4842 5461 -883 2338 99 0 6 chr12 44764857 44765169 -99517320 + AluSg SINE Alu 1 310 0 5060 181 44 83 chr12 44765169 44766245 -99516244 + L1MC2 LINE L1 5461 6339 -5 363 214 56 22 chr12 44766312 44766401 -99516088 + MIR SINE MIR 154 245 -17 1388 190 65 0 chr12 44766810 44767057 -99515432 + Tigger7 DNA MER2_type 1 263 -470 556 159 11 0 chr12 44767062 44767150 -99515339 + Tigger7 DNA MER2_type 2492 2580 -7 202 349 64 9 chr12 44767224 44767333 -99515156 - L2 LINE L2 -940 2374 2260 209 274 210 6 chr12 44767546 44767703 -99514786 - L2 LINE L2 -1268 2046 1858 826 180 148 6 chr12 44767710 44767893 -99514596 - MER3 DNA MER1_type 0 209 1 2179 115 3 0 chr12 44768766 44769070 -99513419 + AluSx SINE Alu 1 305 -7 755 226 68 11 chr12 44769183 44769373 -99513116 - MER21B LTR ERV1 -187 676 476 1602 104 5 0 chr12 44769395 44769617 -99512872 - L1PA11 LINE L1 -100 6074 5852 729 235 62 28 chr12 44769623 44769802 -99512687 - MER21B LTR ERV1 -379 484 300 22 0 0 0 chr12 44769802 44769824 -99512665 + AT_rich Low_complexity Low_complexity 1 22 0 1512 150 45 4 chr12 44769889 44770136 -99512353 + Tigger2a DNA MER2_type 1 257 -177 1897 92 4 4 chr12 44770137 44770387 -99512102 + AluY SINE Alu 1 250 -61 1904 101 54 25 chr12 44772965 44773271 -99509218 + AluSq SINE Alu 1 314 0 794 194 65 54 chr12 44773271 44773457 -99509032 + Tigger2a DNA MER2_type 257 444 0 192 143 0 0 chr12 44773462 44773504 -99508985 + (TG)n Simple_repeat Simple_repeat 2 43 0 1073 256 51 22 chr12 44773542 44773815 -99508674 - MER21B LTR ERV1 -571 292 12 24 0 0 0 chr12 44774762 44774786 -99507703 + AT_rich Low_complexity Low_complexity 1 24 0 6214 133 12 14 chr12 44774984 44776442 -99506047 - L1PB1 LINE L1 -8 6143 4688 405 0 0 0 chr12 44777529 44777574 -99504915 + (TG)n Simple_repeat Simple_repeat 1 45 0 2213 104 0 7 chr12 44778060 44778357 -99504132 + AluSg SINE Alu 1 295 -15 2181 89 12 49 chr12 44778368 44778674 -99503815 + AluSq SINE Alu 1 296 -17 414 0 0 0 chr12 44778674 44778720 -99503769 + (CATA)n Simple_repeat Simple_repeat 3 48 0 2181 89 12 49 chr12 44778720 44778738 -99503751 + AluSq SINE Alu 296 313 0 2194 125 3 0 chr12 44779782 44780079 -99502410 + AluSx SINE Alu 1 298 -14 30 27 0 0 chr12 44780403 44780440 -99502049 + AT_rich Low_complexity Low_complexity 1 37 0 1966 127 0 4 chr12 44782117 44782392 -99500097 + AluSx SINE Alu 7 280 -32 225 0 0 0 chr12 44782392 44782417 -99500072 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 192 77 0 0 chr12 44783035 44783061 -99499428 + (GA)n Simple_repeat Simple_repeat 1 26 0 2205 110 3 0 chr12 44783274 44783574 -99498915 + AluSp SINE Alu 1 301 -12 23 78 0 0 chr12 44783610 44783661 -99498828 + AT_rich Low_complexity Low_complexity 1 51 0 2048 144 16 0 chr12 44784427 44784733 -99497756 - AluSx SINE Alu -1 311 1 210 276 102 39 chr12 44784794 44784921 -99497568 - MIR3 SINE MIR -48 160 26 781 258 164 24 chr12 44786090 44786388 -99496101 - L2 LINE L2 0 3313 2974 234 0 0 0 chr12 44787227 44787253 -99495236 + (A)n Simple_repeat Simple_repeat 1 26 0 270 0 0 0 chr12 44788445 44788475 -99494014 + (T)n Simple_repeat Simple_repeat 1 30 0 736 171 9 0 chr12 44792057 44792168 -99490321 - FLAM_A SINE Alu -18 124 13 2214 109 10 0 chr12 44792518 44792811 -99489678 - AluSq SINE Alu -16 297 2 413 210 40 48 chr12 44794382 44794506 -99487983 + L1MC4 LINE L1 7919 8041 -1 229 65 0 0 chr12 44794952 44794998 -99487491 - LTR66 LTR ERVL -171 439 394 416 135 14 0 chr12 44795012 44795086 -99487403 + (TA)n Simple_repeat Simple_repeat 2 76 0 2243 92 4 0 chr12 44795086 44795387 -99487102 - AluSp SINE Alu 0 302 1 1647 155 7 22 chr12 44795528 44795799 -99486690 + AluJb SINE Alu 1 267 -45 1089 76 0 0 chr12 44795862 44795994 -99486495 + AluSp SINE Alu 1 132 -181 1582 100 5 0 chr12 44795996 44796196 -99486293 + AluSp SINE Alu 1 201 -112 701 126 0 18 chr12 44796308 44796419 -99486070 - AluSq/x SINE Alu -203 110 2 21 0 0 0 chr12 44796564 44796585 -99485904 + AT_rich Low_complexity Low_complexity 1 21 0 296 89 22 0 chr12 44796867 44796912 -99485577 - Alu SINE Alu -253 46 1 186 43 0 0 chr12 44797011 44797034 -99485455 + (TTA)n Simple_repeat Simple_repeat 1 23 0 249 94 0 0 chr12 44797036 44797068 -99485421 - Alu SINE Alu -20 113 82 224 325 181 25 chr12 44797076 44797236 -99485253 - L2 LINE L2 0 3272 3088 342 242 226 0 chr12 44797767 44797891 -99484598 - MIR3 SINE MIR 0 208 57 2304 97 13 0 chr12 44799833 44800133 -99482356 + AluSg1 SINE Alu 1 304 -5 2277 114 0 0 chr12 44800141 44800448 -99482041 + AluSx SINE Alu 1 307 -5 364 323 2 22 chr12 44800743 44800896 -99481593 + MER5A DNA MER1_type 1 161 -28 1742 138 0 0 chr12 44800956 44801195 -99481294 + AluSx SINE Alu 1 239 -73 364 326 2 22 chr12 44801722 44801875 -99480614 + MER5A DNA MER1_type 1 161 -28 2242 132 0 0 chr12 44801935 44802245 -99480244 + AluSx SINE Alu 1 310 -2 2193 114 7 0 chr12 44802503 44802810 -99479679 - AluSg SINE Alu -1 309 1 22 0 0 0 chr12 44804402 44804424 -99478065 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 44805026 44805049 -99477440 + AT_rich Low_complexity Low_complexity 1 23 0 1914 154 0 11 chr12 44805055 44805364 -99477125 + AluJo SINE Alu 1 306 0 310 296 0 0 chr12 44805367 44805455 -99477034 + L1MC4 LINE L1 6613 6700 -1342 210 222 0 0 chr12 44805465 44805519 -99476970 + (TA)n Simple_repeat Simple_repeat 1 54 0 2262 103 0 22 chr12 44806120 44806431 -99476058 - AluSc SINE Alu -5 304 1 186 43 0 0 chr12 44806976 44806999 -99475490 + (A)n Simple_repeat Simple_repeat 1 23 0 1957 100 0 76 chr12 44807612 44807937 -99474552 + AluSx SINE Alu 5 306 0 2245 109 17 0 chr12 44807942 44808236 -99474253 + AluSx SINE Alu 1 299 -13 418 304 172 0 chr12 44808342 44808546 -99473943 + MIR SINE MIR 11 249 -13 835 162 0 37 chr12 44809025 44809161 -99473328 - AluJb SINE Alu -180 132 2 1853 169 3 6 chr12 44809189 44809502 -99472987 + AluJb SINE Alu 1 312 0 667 197 15 51 chr12 44809516 44809653 -99472836 + AluJo SINE Alu 3 134 -178 16002 114 41 20 chr12 44809817 44810096 -99472393 + Tigger1 DNA MER2_type 4 276 -2142 2428 66 7 13 chr12 44810096 44810399 -99472090 - AluY SINE Alu -10 301 1 16002 114 41 20 chr12 44810399 44811770 -99470719 + Tigger1 DNA MER2_type 276 1617 -801 2163 95 10 16 chr12 44811770 44812076 -99470413 + AluSx SINE Alu 1 304 -8 16002 114 41 20 chr12 44812076 44812131 -99470358 + Tigger1 DNA MER2_type 1617 1669 -749 1359 136 45 129 chr12 44812131 44812261 -99470228 + AluJo SINE Alu 1 140 -172 1610 169 65 7 chr12 44812261 44812424 -99470065 - AluJb SINE Alu -12 300 113 261 0 0 0 chr12 44812424 44812453 -99470036 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1610 169 65 7 chr12 44812453 44812568 -99469921 - AluJb SINE Alu -199 113 6 1359 136 45 129 chr12 44812568 44812769 -99469720 + AluJo SINE Alu 140 304 -8 16002 114 41 20 chr12 44812769 44812835 -99469654 + Tigger1 DNA MER2_type 1669 1732 -686 2318 113 0 0 chr12 44812835 44813135 -99469354 - AluSx SINE Alu -12 300 1 16002 114 41 20 chr12 44813135 44813726 -99468763 + Tigger1 DNA MER2_type 1732 2418 0 214 205 0 0 chr12 44813744 44813783 -99468706 + T-rich Low_complexity Low_complexity 1 39 0 1004 196 0 0 chr12 44813784 44813947 -99468542 - FRAM SINE Alu -2 164 2 1762 93 37 0 chr12 44814288 44814534 -99467955 - L1MA2 LINE L1 0 6304 6050 30 0 0 0 chr12 44814601 44814631 -99467858 + AT_rich Low_complexity Low_complexity 1 30 0 263 217 14 43 chr12 44814774 44814843 -99467646 - L2 LINE L2 -37 3276 3210 1029 162 0 0 chr12 44815386 44815540 -99466949 + AluJb SINE Alu 129 282 -30 25 0 0 0 chr12 44815542 44815567 -99466922 + AT_rich Low_complexity Low_complexity 1 25 0 2085 123 3 19 chr12 44815576 44815884 -99466605 + AluSx SINE Alu 1 303 -9 2011 123 16 3 chr12 44817063 44817371 -99465118 - AluSq SINE Alu -1 312 1 791 245 78 16 chr12 44867405 44867650 -99414839 + L1ME1 LINE L1 5905 6164 -2 344 323 85 87 chr12 44867928 44868330 -99414159 + L2 LINE L2 2870 3270 -2 180 306 163 20 chr12 44868527 44868625 -99413864 + L2 LINE L2 3149 3260 -12 638 174 91 8 chr12 44868626 44868758 -99413731 + FLAM_C SINE Alu 1 143 0 261 75 0 0 chr12 44869472 44869512 -99412977 + (CA)n Simple_repeat Simple_repeat 1 40 0 339 167 0 64 chr12 44869852 44869930 -99412559 - MER96 DNA MER1_type? 0 175 103 613 320 93 6 chr12 44870037 44870359 -99412130 + L2 LINE L2 2963 3312 -1 897 265 70 54 chr12 44870611 44871053 -99411436 - MLT1G LTR MaLR 0 590 142 1422 199 3 17 chr12 44871302 44871593 -99410896 + AluJb SINE Alu 3 289 -23 504 317 10 20 chr12 44871943 44872145 -99410344 - MLT1G1-int LTR MaLR -884 487 288 238 275 92 25 chr12 44872138 44872258 -99410231 - MLT1G1-int LTR MaLR -1227 144 17 * 408 245 24 64 chr12 44872272 44872394 -99410095 - MLT1G1 LTR MaLR 0 590 435 1738 152 26 26 chr12 44872394 44872697 -99409792 + AluSx SINE Alu 5 307 -5 408 245 24 64 chr12 44872697 44872764 -99409725 - MLT1G1 LTR MaLR -155 435 367 644 260 114 14 chr12 44872814 44873033 -99409456 - MLT1G1 LTR MaLR -276 319 79 201 121 0 0 chr12 44873126 44873159 -99409330 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 198 352 42 35 chr12 44873221 44873363 -99409126 + L2 LINE L2 3171 3313 0 22 35 0 0 chr12 44874303 44874332 -99408157 + AT_rich Low_complexity Low_complexity 1 29 0 3148 105 138 61 chr12 44874685 44875273 -99407216 + MER51A LTR ERV1 2 634 0 395 329 91 4 chr12 44875380 44875611 -99406878 + MIR SINE MIR 12 262 0 391 122 200 22 chr12 44875736 44875826 -99406663 + MER41A LTR ERV1 361 466 -88 184 376 64 38 chr12 44877408 44877565 -99404924 + MIR SINE MIR 20 180 -82 622 242 72 18 chr12 44877727 44878114 -99404375 + MLT1G3 LTR MaLR 1 503 -87 3701 123 57 22 chr12 44878117 44878743 -99403746 + MER51A LTR ERV1 1 638 -2 488 176 35 0 chr12 44878746 44878831 -99403658 + MLT1G3 LTR MaLR 503 590 0 222 318 16 0 chr12 44880395 44880458 -99402031 - MIR SINE MIR -186 76 13 1723 134 124 3 chr12 44880724 44881014 -99401475 - MER7A DNA MER2_type 0 346 24 295 277 59 91 chr12 44882081 44882301 -99400188 + MLT1J LTR MaLR 99 311 -200 2421 190 61 65 chr12 44882417 44883074 -99399415 - MLT1E1 LTR MaLR 0 654 1 1485 91 0 0 chr12 44883181 44883368 -99399121 - AluY SINE Alu -70 241 55 1369 167 5 0 chr12 44883481 44883696 -99398793 - AluJo SINE Alu -19 293 78 309 306 32 79 chr12 44883877 44884093 -99398396 + MIR SINE MIR 20 225 -37 291 316 91 52 chr12 44884132 44884363 -99398126 - L2 LINE L2 0 3272 3033 635 253 129 39 chr12 44884403 44884636 -99397853 - MIR SINE MIR 0 262 9 183 304 188 52 chr12 44884827 44885829 -99396660 - L2 LINE L2 -538 2776 1639 1179 163 25 10 chr12 44885839 44886035 -99396454 + AluJb SINE Alu 91 289 -23 1254 246 115 41 chr12 44886282 44887027 -99395462 - L2 LINE L2 0 3313 2503 602 263 148 69 chr12 44887740 44888219 -99394270 + LTR33A LTR ERVL 5 521 -2 597 274 98 42 chr12 44888223 44888650 -99393839 - L1ME4a LINE L1 -28 6093 5643 231 365 0 0 chr12 44888651 44888725 -99393764 + L2 LINE L2 3193 3266 -47 653 264 66 6 chr12 44889719 44889901 -99392588 + MIR SINE MIR 43 235 -27 200 333 12 25 chr12 44890352 44890433 -99392056 - L3 LINE CR1 -48 1529 1450 11612 95 22 19 chr12 44890752 44893599 -99388890 + L1PA7 LINE L1 13 2873 -3588 20919 91 19 1 chr12 44893600 44897259 -99385230 + L1PA7 LINE L1 2784 6462 -7 200 147 0 0 chr12 44897318 44897352 -99385137 - L3 LINE CR1 -576 1001 968 309 320 32 32 chr12 44897519 44897644 -99384845 - L3 LINE CR1 -922 655 531 1683 202 30 46 chr12 44897682 44898053 -99384436 - MLT1A1 LTR MaLR 0 365 1 316 242 157 39 chr12 44898064 44898217 -99384272 + MIR SINE MIR 64 234 -28 2338 91 17 0 chr12 44898336 44898634 -99383855 - AluY SINE Alu -8 303 1 22 0 0 0 chr12 44898846 44898868 -99383621 + AT_rich Low_complexity Low_complexity 1 22 0 258 305 186 26 chr12 44898997 44899223 -99383266 + MIR SINE MIR 1 262 0 480 179 0 0 chr12 44900593 44900671 -99381818 - MER3 DNA MER1_type -124 85 8 1573 272 177 32 chr12 44900739 44901141 -99381348 + L2 LINE L2 7 349 -2965 1740 160 10 14 chr12 44901141 44901429 -99381060 + AluJo SINE Alu 7 293 -19 1573 272 177 32 chr12 44901429 44901717 -99380772 + L2 LINE L2 349 797 -2517 667 133 100 0 chr12 44901717 44901837 -99380652 - MER65A LTR ERV1 0 445 314 780 170 0 50 chr12 44901838 44901979 -99380510 - FLAM_A SINE Alu -1 141 8 1795 145 7 14 chr12 44901980 44902263 -99380226 - MER65A LTR ERV1 -125 320 40 41798 46 9 3 chr12 44902678 44903364 -99379125 - L1PA4 LINE L1 -8 6147 5467 207 0 0 0 chr12 44903364 44903387 -99379102 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 41798 46 9 3 chr12 44903387 44908602 -99373887 - L1PA4 LINE L1 -688 5467 209 787 167 0 8 chr12 44909273 44909405 -99373084 - MSTB LTR MaLR -85 341 211 5101 277 124 29 chr12 44909452 44911760 -99370729 + L2 LINE L2 789 3311 -2 304 239 141 0 chr12 44911845 44911937 -99370552 + MIR SINE MIR 80 184 -78 1668 196 10 7 chr12 44912000 44912301 -99370188 - AluJo SINE Alu -8 304 3 683 258 59 16 chr12 44912417 44912603 -99369886 + MIR SINE MIR 56 249 -13 29 0 0 0 chr12 44913595 44913624 -99368865 + AT_rich Low_complexity Low_complexity 1 29 0 218 233 156 22 chr12 44914274 44914364 -99368125 - MIR3 SINE MIR -103 105 4 392 298 39 39 chr12 44914923 44915104 -99367385 + MER5A DNA MER1_type 7 187 -2 2728 94 30 6 chr12 44915305 44915667 -99366822 + THE1C LTR MaLR 5 375 0 290 298 161 43 chr12 44915785 44916064 -99366425 - L2 LINE L2 -5 3308 2997 561 330 54 18 chr12 44916164 44916385 -99366104 - MIR SINE MIR -14 248 20 596 283 132 9 chr12 44916525 44916737 -99365752 - MIR SINE MIR -16 246 9 282 316 59 0 chr12 44918105 44918241 -99364248 + MIR3 SINE MIR 11 154 -54 257 224 75 0 chr12 44922498 44922565 -99359924 - MIR3 SINE MIR -39 169 98 199 174 43 0 chr12 44923246 44923292 -99359197 - L2 LINE L2 -9 3263 3216 2192 157 57 12 chr12 44923378 44923780 -99358709 + L1MB1 LINE L1 5528 5947 -221 409 298 135 23 chr12 44923805 44924020 -99358469 - Charlie8 DNA MER1_type -2174 243 5 23 0 0 0 chr12 44924621 44924644 -99357845 + AT_rich Low_complexity Low_complexity 1 23 0 402 276 172 0 chr12 44924724 44924858 -99357631 - MIR3 SINE MIR -8 200 44 213 173 0 58 chr12 44925122 44925174 -99357315 + L2 LINE L2 3224 3272 0 262 283 61 20 chr12 44925598 44925697 -99356792 + MIR SINE MIR 90 192 -70 450 0 0 0 chr12 44926788 44926838 -99355651 + (TG)n Simple_repeat Simple_repeat 2 51 0 591 287 51 0 chr12 44928368 44928525 -99353964 - MIR SINE MIR -1 261 97 2530 182 81 84 chr12 44928758 44929473 -99353016 + LTR8A LTR ERV1 1 713 -14 2412 128 78 67 chr12 44930433 44930880 -99351609 + LTR47A LTR ERVL 1 452 0 358 331 26 13 chr12 44931003 44931157 -99351332 - MIR SINE MIR -12 250 95 2083 140 7 0 chr12 44932513 44932820 -99349669 - AluSx SINE Alu -3 309 1 232 211 67 11 chr12 44933172 44933262 -99349227 + L1ME2 LINE L1 1072 1166 -4953 828 121 35 12 chr12 44933272 44933445 -99349044 + CT-rich Low_complexity Low_complexity 2 178 0 2099 148 7 0 chr12 44933462 44933837 -99348652 - AluSq SINE Alu 0 377 1 599 305 39 25 chr12 44933849 44934134 -99348355 + HAL1 LINE L1 1281 1569 -938 560 259 43 0 chr12 44934179 44934295 -99348194 - MIR SINE MIR -136 126 6 1168 294 109 45 chr12 44934340 44934524 -99347965 + L1ME2 LINE L1 3322 3493 -2611 2207 112 0 3 chr12 44934524 44934819 -99347670 + AluSg SINE Alu 1 294 -16 1168 294 109 45 chr12 44934819 44935735 -99346754 + L1ME2 LINE L1 3493 4349 -1755 1907 126 59 54 chr12 44935735 44936108 -99346381 + THE1C LTR MaLR 1 375 0 1168 294 109 45 chr12 44936108 44936660 -99345829 + L1ME2 LINE L1 4349 4864 -1240 1591 145 44 14 chr12 44936660 44936956 -99345533 + L1MA4 LINE L1 5996 6300 0 1168 294 109 45 chr12 44936956 44937848 -99344641 + L1ME2 LINE L1 4864 5999 -105 186 43 0 0 chr12 44938199 44938222 -99344267 + (TA)n Simple_repeat Simple_repeat 1 23 0 377 198 70 70 chr12 44938226 44938279 -99344210 + L1ME LINE L1 5264 5316 -862 1471 141 62 8 chr12 44938279 44938520 -99343969 + L1PB1 LINE L1 5895 6148 -3 377 198 70 70 chr12 44938520 44938623 -99343866 + L1ME LINE L1 5315 5420 -758 356 229 143 9 chr12 44938739 44938844 -99343645 + L1ME LINE L1 5412 5530 -636 283 367 57 0 chr12 44942020 44942178 -99340311 + MIR SINE MIR 15 181 -81 32 26 0 0 chr12 44943044 44943083 -99339406 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr12 44943947 44943972 -99338517 + AT_rich Low_complexity Low_complexity 1 25 0 278 197 279 49 chr12 44943997 44944119 -99338370 - MER20 DNA MER1_type -17 202 53 223 258 186 32 chr12 44944358 44944482 -99338007 - MIR SINE MIR -10 252 110 1149 281 65 12 chr12 44944870 44945208 -99337281 + MLT1J1 LTR MaLR 2 357 -89 537 220 130 34 chr12 44945246 44945423 -99337066 - MER63A DNA MER1_type -16 194 1 2025 252 65 31 chr12 44946082 44946135 -99336354 - MLT1G1 LTR MaLR 0 595 545 2252 88 3 3 chr12 44946135 44946439 -99336050 + AluSp SINE Alu 1 304 0 2025 252 65 31 chr12 44946439 44946956 -99335533 - MLT1G1 LTR MaLR -50 545 5 263 363 0 0 chr12 44947206 44947286 -99335203 - L2 LINE L2 0 3313 3234 2395 46 0 40 chr12 44948251 44948554 -99333935 + AluY SINE Alu 20 310 -1 450 320 184 39 chr12 44949467 44949956 -99332533 + L2 LINE L2 2743 3308 -5 235 238 0 0 chr12 44949968 44950010 -99332479 + L2 LINE L2 3210 3251 -21 496 312 72 34 chr12 44950407 44950644 -99331845 - MIR SINE MIR -10 252 7 3147 219 54 37 chr12 44952376 44953154 -99329335 + MER21B LTR ERV1 1 791 -72 1226 151 94 124 chr12 44953927 44954298 -99328191 - MLT1B LTR MaLR -20 370 11 238 380 20 20 chr12 44954411 44954511 -99327978 - L2 LINE L2 -181 3091 2992 1024 157 0 24 chr12 44954880 44955046 -99327443 + AluJb SINE Alu 134 295 -17 256 143 48 0 chr12 44955062 44955103 -99327386 - MER33 DNA MER1_type -22 302 260 1172 202 53 7 chr12 44955103 44955550 -99326939 - MLT1D LTR MaLR 0 505 9 289 132 108 70 chr12 44955546 44955572 -99326917 - MER33 DNA MER1_type -2318 306 282 * 1737 149 76 0 chr12 44955572 44955847 -99326642 + AluSx SINE Alu 1 296 -16 289 132 108 70 chr12 44955847 44956010 -99326479 - MER33 DNA MER1_type -2342 282 41 566 227 61 0 chr12 44956864 44956996 -99325493 + MIR SINE MIR 9 148 -114 1166 187 4 61 chr12 44958093 44958323 -99324166 + MER20 DNA MER1_type 3 219 0 451 289 116 53 chr12 44958811 44959036 -99323453 + MIR SINE MIR 21 259 -3 644 279 77 18 chr12 44960300 44960540 -99321949 - MIR SINE MIR -1 261 11 186 133 0 0 chr12 44963295 44963325 -99319164 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 1129 138 6 17 chr12 44964195 44964376 -99318113 - AluSg/x SINE Alu -2 310 132 342 0 0 0 chr12 44964379 44964417 -99318072 + (TG)n Simple_repeat Simple_repeat 2 39 0 1859 162 0 0 chr12 44964417 44964701 -99317788 - AluSx SINE Alu -28 284 1 1019 300 106 30 chr12 44965098 44965673 -99316816 + MLT2F LTR ERVL 7 593 -35 373 262 23 70 chr12 44965995 44966167 -99316322 - L2 LINE L2 -938 2376 2213 228 286 91 69 chr12 44966323 44966498 -99315991 + MLT1I LTR MaLR 83 261 -148 410 322 40 10 chr12 44966719 44966921 -99315568 - L2 LINE L2 -1213 2101 1894 223 314 91 8 chr12 44966929 44967050 -99315439 - L2 LINE L2 -1890 1424 1294 183 239 0 0 chr12 44967310 44967356 -99315133 + (TCCA)n Simple_repeat Simple_repeat 4 49 0 400 303 53 15 chr12 44968553 44968685 -99313804 - L2 LINE L2 0 3272 3136 602 273 0 0 chr12 44970893 44971025 -99311464 + L1 LINE L1 2604 2735 -3411 1627 178 14 14 chr12 44971282 44971575 -99310914 - AluJo SINE Alu -14 298 6 23 0 0 0 chr12 44971669 44971692 -99310797 + AT_rich Low_complexity Low_complexity 1 23 0 2579 46 0 7 chr12 44971788 44972095 -99310394 + AluY SINE Alu 7 311 0 2481 42 10 39 chr12 44972278 44972590 -99309899 + AluY SINE Alu 1 303 -8 2105 123 3 3 chr12 44972740 44973033 -99309456 - AluSx SINE Alu -18 294 2 347 160 13 0 chr12 44973485 44973560 -99308929 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 411 286 21 7 chr12 44973772 44973912 -99308577 + CT-rich Low_complexity Low_complexity 1 142 0 254 195 24 73 chr12 44973947 44974029 -99308460 + L1MC4 LINE L1 6626 6703 -1339 318 206 0 0 chr12 44974032 44974100 -99308389 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 4662 136 60 73 chr12 44975431 44976312 -99306177 - MER4D LTR ERV1 0 872 3 186 227 0 0 chr12 44976314 44976358 -99306131 + (TA)n Simple_repeat Simple_repeat 2 45 0 229 219 137 0 chr12 44976397 44976470 -99306019 - MIR SINE MIR -83 179 97 201 211 197 0 chr12 44976670 44976746 -99305743 - MIR SINE MIR -119 143 53 810 279 42 70 chr12 44977571 44977926 -99304563 - MLT1J1 LTR MaLR -7 439 95 293 247 0 25 chr12 44978045 44978126 -99304363 - LTR67 LTR ERVL -14 543 465 228 35 0 0 chr12 44978332 44978361 -99304128 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 465 253 133 125 chr12 44978820 44979188 -99303301 - MLT1K LTR MaLR -8 580 210 942 219 149 108 chr12 44979365 44979867 -99302622 - MLT1H LTR MaLR -24 525 3 273 118 0 0 chr12 44979985 44980036 -99302453 + (GA)n Simple_repeat Simple_repeat 1 51 0 2592 59 0 0 chr12 44980909 44981215 -99301274 - AluY SINE Alu -5 306 1 2400 81 0 0 chr12 44983278 44983576 -99298913 - AluY SINE Alu -13 298 1 25 65 0 0 chr12 44984098 44984144 -99298345 + AT_rich Low_complexity Low_complexity 1 46 0 271 259 49 37 chr12 44984482 44984563 -99297926 + L2 LINE L2 3152 3233 -39 536 272 195 38 chr12 44985185 44985579 -99296910 - L2 LINE L2 -16 3297 2842 471 309 149 3 chr12 44985617 44985905 -99296584 - L2 LINE L2 -1978 1336 1007 2605 212 16 4 chr12 44985911 44986411 -99296078 - LTR53 LTR ERVL 0 519 14 403 254 36 85 chr12 44986440 44986664 -99295825 - L2 LINE L2 -2333 981 769 229 270 0 54 chr12 44986935 44987009 -99295480 + L2 LINE L2 3235 3304 -9 583 295 16 107 chr12 44987166 44987532 -99294957 - L2 LINE L2 0 3272 2940 1131 171 41 19 chr12 44987988 44988230 -99294259 + MLT1E LTR MaLR 355 592 -1 380 310 26 0 chr12 44988231 44988344 -99294145 + MIR SINE MIR 144 259 -3 2071 77 88 3 chr12 44988782 44989067 -99293422 - AluY SINE Alu -2 309 1 1756 168 31 3 chr12 44989733 44990024 -99292465 - AluJo SINE Alu -13 299 1 225 0 0 0 chr12 44991005 44991030 -99291459 + (T)n Simple_repeat Simple_repeat 1 25 0 590 364 90 45 chr12 44992005 44992580 -99289909 + L2 LINE L2 2309 2909 -405 1457 113 0 33 chr12 44993562 44993775 -99288714 - AluSq SINE Alu -107 206 1 208 103 0 0 chr12 44995138 44995167 -99287322 + MER5A DNA MER1_type 1 29 -160 510 290 72 0 chr12 44995227 44995365 -99287124 + MER5A DNA MER1_type 31 178 -11 5950 145 17 31 chr12 44995395 44996120 -99286369 - L1MA6 LINE L1 0 6300 5567 2163 111 0 13 chr12 44996120 44996426 -99286063 - AluY SINE Alu -9 302 1 5950 145 17 31 chr12 44996426 44997763 -99284726 - L1MA6 LINE L1 -733 5567 4261 2197 155 78 32 chr12 44997763 44998163 -99284326 - Tigger4(Zombi) DNA MER2_type -2313 418 1 271 318 47 0 chr12 44998190 44998275 -99284214 + MIR3 SINE MIR 103 191 -17 5438 195 26 7 chr12 44998591 44999888 -99282601 - L1M2 LINE L1 -4171 3038 1617 511 257 66 143 chr12 44999915 45000187 -99282302 + MIR SINE MIR 12 262 0 362 231 31 0 chr12 45000349 45000452 -99282037 + L1M2 LINE L1 1751 1856 -5353 423 0 0 0 chr12 45001291 45001338 -99281151 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 409 264 9 27 chr12 45001787 45001897 -99280592 + MIR SINE MIR 36 143 -65 2124 130 7 0 chr12 45002117 45002424 -99280065 + AluSx SINE Alu 4 312 0 2099 218 43 45 chr12 45002496 45003051 -99279438 - MLT2B3 LTR ERVL 0 554 1 681 265 27 16 chr12 45004075 45004260 -99278229 - MIR SINE MIR -27 235 49 498 216 81 95 chr12 45004478 45004545 -99277944 - MER20 DNA MER1_type 0 219 153 222 37 0 0 chr12 45004545 45004572 -99277917 + (TGGG)n Simple_repeat Simple_repeat 1 27 0 498 216 81 95 chr12 45004572 45004726 -99277763 - MER20 DNA MER1_type -66 153 1 514 337 158 17 chr12 45005974 45006691 -99275798 - L1MC4a LINE L1 -754 5392 5191 1149 191 75 97 chr12 45006952 45007279 -99275210 - MLT1A1 LTR MaLR -2 363 43 1841 172 3 7 chr12 45007279 45007576 -99274913 + AluSx SINE Alu 1 296 -16 1149 191 75 97 chr12 45007576 45007619 -99274870 - MLT1A1 LTR MaLR -322 43 1 22 56 0 0 chr12 45007690 45007726 -99274763 + AT_rich Low_complexity Low_complexity 1 36 0 14940 180 32 14 chr12 45007770 45012224 -99270265 - L1PB1 LINE L1 0 6867 2493 2091 125 0 3 chr12 45012224 45012512 -99269977 + AluSq SINE Alu 2 288 -25 14940 180 32 14 chr12 45012512 45012766 -99269723 - L1PB1 LINE L1 -4374 2493 2245 1772 122 111 7 chr12 45012766 45013045 -99269444 - AluSg1 SINE Alu -1 308 1 14940 180 32 14 chr12 45013045 45013313 -99269176 - L1PB1 LINE L1 -4622 2245 1833 2006 141 10 0 chr12 45013500 45013806 -99268683 - AluSx SINE Alu -3 309 1 4754 137 63 4 chr12 45013806 45015351 -99267138 - L1PBa LINE L1 -4755 2108 327 596 182 61 0 chr12 45015350 45015482 -99267007 - L1MC3 LINE L1 -24 7761 7622 * 6903 235 86 55 chr12 45015488 45018598 -99263891 - L1MA9 LINE L1 -37 6339 3328 189 0 0 0 chr12 45018598 45018619 -99263870 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 6903 235 86 55 chr12 45018619 45018867 -99263622 - L1MA9 LINE L1 -3048 3328 3089 1839 172 17 0 chr12 45018867 45019163 -99263326 - AluSq SINE Alu -11 302 2 6903 235 86 55 chr12 45019163 45020868 -99261621 - L1MA9 LINE L1 -3287 3089 1273 1991 148 7 0 chr12 45020868 45021166 -99261323 - AluSx SINE Alu -12 300 1 6903 235 86 55 chr12 45021166 45022466 -99260023 - L1MA9 LINE L1 -5103 1273 15 21 0 0 0 chr12 45022639 45022660 -99259829 + AT_rich Low_complexity Low_complexity 1 21 0 196 387 19 9 chr12 45023456 45023562 -99258927 - L2 LINE L2 -20 3293 3187 2684 42 0 0 chr12 45023814 45024125 -99258364 - AluY SINE Alu 0 311 1 219 329 64 36 chr12 45024125 45024265 -99258224 + L2 LINE L2 3159 3302 -11 450 307 29 87 chr12 45026079 45026356 -99256133 - MIR SINE MIR 0 262 2 449 271 186 10 chr12 45026432 45026631 -99255858 + MLT1L LTR MaLR 1 234 -381 2031 144 0 0 chr12 45026645 45026936 -99255553 + AluSx SINE Alu 1 291 -21 4596 138 19 4 chr12 45026943 45027208 -99255281 + L1MA5 LINE L1 5519 5778 -522 780 111 0 0 chr12 45027208 45027325 -99255164 + (TA)n Simple_repeat Simple_repeat 1 117 0 4596 138 19 4 chr12 45027325 45027829 -99254660 + L1MA5 LINE L1 5778 6300 0 643 315 68 22 chr12 45028052 45028376 -99254113 + MLT1L LTR MaLR 229 567 -48 360 291 16 39 chr12 45029477 45029604 -99252885 + L2 LINE L2 3122 3245 -27 320 304 46 80 chr12 45030999 45031050 -99251439 - MIR SINE MIR -17 245 194 1888 154 3 3 chr12 45031050 45031342 -99251147 - AluSx SINE Alu -14 298 7 320 304 46 80 chr12 45031342 45031527 -99250962 - MIR SINE MIR -68 194 17 218 218 18 18 chr12 45035183 45035238 -99247251 + CT-rich Low_complexity Low_complexity 1 55 0 2078 168 37 31 chr12 45035531 45036075 -99246414 - MLT2A2 LTR ERVL -4 550 1 1940 150 0 17 chr12 45037841 45038141 -99244348 + AluJb SINE Alu 1 295 -17 337 331 163 3 chr12 45038347 45038716 -99243773 - L1M4 LINE L1 -3043 3103 2676 356 280 161 21 chr12 45038913 45039199 -99243290 - L1M4 LINE L1 -3711 2435 2110 2146 86 7 7 chr12 45039609 45039932 -99242557 - AluSc SINE Alu 0 323 1 21 36 0 0 chr12 45043255 45043283 -99239206 + AT_rich Low_complexity Low_complexity 1 28 0 457 232 0 13 chr12 45043545 45043700 -99238789 + (TA)n Simple_repeat Simple_repeat 1 153 0 538 278 60 0 chr12 45043732 45043865 -99238624 - MIR SINE MIR -121 141 1 3286 106 26 25 chr12 45046735 45047266 -99235223 - L1MC1 LINE L1 -17 6316 5785 254 310 155 55 chr12 45048547 45049334 -99233155 - L2 LINE L2 -36 3236 2380 1369 220 15 42 chr12 45050698 45051000 -99231489 - L1ME1 LINE L1 -4 6162 5872 1658 168 3 67 chr12 45051000 45051315 -99231174 - AluJb SINE Alu -17 295 1 1369 220 15 42 chr12 45051315 45051421 -99231068 - L1ME1 LINE L1 -294 5872 5765 195 319 121 11 chr12 45051458 45051549 -99230940 - L2 LINE L2 -13 3300 3200 550 321 194 16 chr12 45051787 45052075 -99230414 - L2 LINE L2 -461 2853 2618 1831 193 3 3 chr12 45052075 45052386 -99230103 + AluJb SINE Alu 1 311 -1 550 321 194 16 chr12 45052386 45052664 -99229825 - L2 LINE L2 -696 2618 2186 220 350 32 57 chr12 45052662 45052785 -99229704 + L2 LINE L2 3153 3272 0 * 222 288 0 41 chr12 45053213 45053286 -99229203 + L2 LINE L2 3001 3070 -202 214 275 239 0 chr12 45053345 45053454 -99229035 + MIR SINE MIR 20 154 -108 240 111 0 0 chr12 45053515 45053560 -99228929 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 532 229 110 28 chr12 45054023 45054241 -99228248 - L1ME3A LINE L1 -4 6149 5914 2667 207 11 14 chr12 45054290 45054938 -99227551 - L1 LINE L1 -1379 4767 4122 1403 214 87 36 chr12 45054940 45055313 -99227176 - L1ME3A LINE L1 -339 5806 5403 2152 121 3 3 chr12 45055313 45055611 -99226878 + AluSc SINE Alu 1 298 -11 1403 214 87 36 chr12 45055611 45055709 -99226780 - L1ME3A LINE L1 -742 5403 5311 446 302 37 41 chr12 45055739 45055981 -99226508 - L1ME3A LINE L1 -1000 5129 4889 572 262 49 13 chr12 45055996 45056221 -99226268 - L1ME3A LINE L1 -1318 4811 4579 * 5262 230 69 58 chr12 45056213 45056852 -99225637 - L1MC3 LINE L1 -15 7770 7140 2204 116 7 7 chr12 45056852 45057153 -99225336 - AluSx SINE Alu -11 301 1 5262 230 69 58 chr12 45057153 45057793 -99224696 - L1MC3 LINE L1 -645 7140 6509 2036 158 15 0 chr12 45057793 45058134 -99224355 + MER7A DNA MER2_type 3 346 0 5262 230 69 58 chr12 45058134 45059361 -99223128 - L1MC3 LINE L1 -1276 6509 5237 428 18 0 18 chr12 45059361 45059418 -99223071 - L1PA4 LINE L1 -11 6144 6089 5262 230 69 58 chr12 45059418 45059837 -99222652 - L1MC3 LINE L1 -2548 5237 4824 279 281 90 11 chr12 45059845 45060023 -99222466 - L1ME3A LINE L1 -1537 4592 4401 18641 47 2 0 chr12 45060208 45063149 -99219340 - L1PA4 LINE L1 -256 5899 2953 1065 301 81 11 chr12 45063150 45063595 -99218894 + LTR33 LTR ERVL 30 505 -16 328 343 36 0 chr12 45063608 45063748 -99218741 - L1ME3A LINE L1 -4673 1456 1312 539 263 22 47 chr12 45063912 45064190 -99218299 - L1ME3A LINE L1 -4928 1191 921 453 332 152 47 chr12 45064206 45064800 -99217689 - L1ME3A LINE L1 -5194 925 270 337 238 127 24 chr12 45064863 45064989 -99217500 - L1ME3A LINE L1 -5940 179 41 187 326 136 0 chr12 45065313 45065460 -99217029 - L2 LINE L2 -994 2320 2154 861 276 63 12 chr12 45066240 45066559 -99215930 - L1MEc LINE L1 -6025 371 37 1219 156 0 35 chr12 45066674 45066905 -99215584 + AluSg/x SINE Alu 76 298 -14 334 250 67 19 chr12 45067154 45067258 -99215231 + L2 LINE L2 3205 3313 0 2211 123 0 10 chr12 45067262 45067571 -99214918 + AluSg SINE Alu 1 306 -4 241 267 105 48 chr12 45067593 45067698 -99214791 + L2 LINE L2 3203 3313 0 266 252 151 42 chr12 45069799 45069918 -99212571 + L2 LINE L2 3138 3269 -3 334 300 67 17 chr12 45069933 45070053 -99212436 - MIR SINE MIR -87 175 50 793 127 190 0 chr12 45070304 45070462 -99212027 - MER53 DNA DNA -1 188 1 259 220 0 0 chr12 45070769 45070819 -99211670 + L2 LINE L2 3263 3312 -1 2072 87 111 18 chr12 45070851 45071184 -99211305 - THE1B LTR MaLR 0 364 1 243 0 0 0 chr12 45071282 45071309 -99211180 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 458 313 0 0 chr12 45071494 45071628 -99210861 + MER94 DNA DNA 1 134 0 1178 155 0 0 chr12 45071629 45071803 -99210686 - AluJo SINE Alu -10 302 129 900 181 7 0 chr12 45071824 45071968 -99210521 - AluJo SINE Alu -161 151 7 795 299 57 45 chr12 45072292 45072463 -99210026 - MLT1I LTR MaLR 0 409 242 2181 111 3 0 chr12 45072463 45072761 -99209728 - AluSx SINE Alu -13 299 1 795 299 57 45 chr12 45072761 45072993 -99209496 - MLT1I LTR MaLR -167 242 1 222 298 95 0 chr12 45073387 45073471 -99209018 - L2 LINE L2 -39 3274 3183 714 197 0 0 chr12 45074065 45074192 -99208297 - AluJo SINE Alu -173 129 3 206 269 90 15 chr12 45074363 45074430 -99208059 - MIR SINE MIR -115 147 76 1653 176 7 7 chr12 45074634 45074923 -99207566 - AluJb SINE Alu -17 295 7 2993 159 33 42 chr12 45075129 45075799 -99206690 - MER39 LTR ERV1 -2 705 1 204 40 0 0 chr12 45075830 45075855 -99206634 + (A)n Simple_repeat Simple_repeat 1 25 0 1732 153 12 53 chr12 45075855 45076176 -99206313 + AluJb SINE Alu 3 310 -2 238 319 51 43 chr12 45076497 45076635 -99205854 + L2 LINE L2 3133 3271 -1 2331 101 0 3 chr12 45077020 45077318 -99205171 + AluSx SINE Alu 1 297 -15 491 246 99 58 chr12 45077823 45078014 -99204475 - MIR SINE MIR -33 229 31 2936 159 25 9 chr12 45078066 45078637 -99203852 - L1MC3 LINE L1 0 7785 7206 578 276 75 15 chr12 45079019 45079218 -99203271 - MIR SINE MIR -34 228 18 244 299 23 46 chr12 45079288 45079375 -99203114 - MIR SINE MIR -152 110 26 482 275 101 43 chr12 45080038 45080296 -99202193 - L2 LINE L2 -888 2426 2154 225 296 41 20 chr12 45083689 45083787 -99198702 + MIR3 SINE MIR 78 177 -31 825 229 151 63 chr12 45085119 45085629 -99196860 + MLT1H1 LTR MaLR 1 555 0 347 308 140 26 chr12 45085765 45085989 -99196500 - MIR SINE MIR -14 248 8 * 416 259 211 14 chr12 45085979 45086126 -99196363 + L2 LINE L2 3096 3271 -1 206 309 12 25 chr12 45088049 45088130 -99194359 + L3b LINE CR1 1408 1487 -96 317 382 7 28 chr12 45088395 45088539 -99193950 - L2 LINE L2 -16 3256 3116 1116 210 133 39 chr12 45088565 45088980 -99193509 + MLT1C LTR MaLR 8 461 -6 190 296 120 19 chr12 45089039 45089147 -99193342 - L2 LINE L2 -219 3053 2935 1701 167 13 54 chr12 45089251 45089368 -99193121 + AluJb SINE Alu 1 121 -191 261 0 0 0 chr12 45089368 45089397 -99193092 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1701 167 13 54 chr12 45089397 45089424 -99193065 + AluJb SINE Alu 121 148 -164 2244 120 0 0 chr12 45089424 45089715 -99192774 + AluSx SINE Alu 5 295 -17 1701 167 13 54 chr12 45089715 45089886 -99192603 + AluJb SINE Alu 148 304 -8 355 331 18 6 chr12 45090521 45090690 -99191799 - L2 LINE L2 -871 2443 2273 1563 220 57 41 chr12 45090930 45091390 -99191099 - MLT1C LTR MaLR 0 467 1 339 270 90 9 chr12 45091654 45091765 -99190724 - MIR SINE MIR -65 143 24 186 43 0 0 chr12 45091770 45091793 -99190696 + (TATG)n Simple_repeat Simple_repeat 2 24 0 490 217 11 0 chr12 45091924 45092016 -99190473 + MER81 DNA DNA 1 93 -21 367 289 9 0 chr12 45092233 45092347 -99190142 - LTR33 LTR ERVL -401 120 6 193 205 26 26 chr12 45092347 45092386 -99190103 - L2 LINE L2 -24 3248 3210 * 454 264 42 14 chr12 45092352 45092496 -99189993 - MIR SINE MIR -22 240 93 197 323 21 52 chr12 45092527 45092623 -99189866 - L2 LINE L2 -30 3283 3191 482 268 14 64 chr12 45092646 45092866 -99189623 - L2 LINE L2 0 3313 3105 4252 34 2 0 chr12 45093069 45093601 -99188888 - L1PA3 LINE L1 -1542 4604 4072 7495 31 6 0 chr12 45093601 45095138 -99187351 + L1PA3 LINE L1 4614 6155 0 300 298 61 28 chr12 45095160 45095341 -99187148 + L1MEc LINE L1 1572 1758 -4638 1756 126 27 10 chr12 45096024 45096318 -99186171 + AluSx SINE Alu 1 299 -13 285 279 95 63 chr12 45096644 45096802 -99185687 - MLT1K LTR MaLR -9 579 417 299 397 35 7 chr12 45096909 45097050 -99185439 + L2 LINE L2 3127 3271 -1 38 39 0 0 chr12 45097181 45097233 -99185256 + AT_rich Low_complexity Low_complexity 1 52 0 245 351 95 12 chr12 45098901 45099069 -99183420 + L3b LINE CR1 1296 1477 -106 4098 89 41 12 chr12 45099607 45100246 -99182243 + L1MA2 LINE L1 5648 6304 0 2193 123 0 0 chr12 45100254 45100547 -99181942 + AluSx SINE Alu 1 293 -19 378 289 169 6 chr12 45101232 45101398 -99181091 + L3 LINE CR1 1222 1414 -163 2651 144 19 2 chr12 45101768 45102447 -99180042 - L1PA16 LINE L1 -492 5674 4981 2682 143 13 17 chr12 45102447 45102916 -99179573 + L1PA16 LINE L1 5695 6166 0 221 222 56 0 chr12 45103674 45103728 -99178761 - MIR SINE MIR -17 245 189 228 202 96 21 chr12 45104429 45104523 -99177966 - L1PB1 LINE L1 0 6151 6051 1772 211 26 7 chr12 45104868 45105290 -99177199 + L1MEc LINE L1 512 941 -5455 1331 273 58 73 chr12 45105341 45106423 -99176066 + L1MEc LINE L1 748 1813 -4583 1752 172 53 20 chr12 45106736 45107038 -99175451 + AluJo SINE Alu 1 312 0 228 217 0 0 chr12 45107524 45107570 -99174919 + Tigger5 DNA MER2_type 10 55 -2268 * 383 208 0 0 chr12 45107539 45107611 -99174878 + Tigger5 DNA MER2_type 2251 2322 -1 21 0 0 0 chr12 45108631 45108652 -99173837 + AT_rich Low_complexity Low_complexity 1 21 0 426 297 138 42 chr12 45109379 45109880 -99172609 + L1MEc LINE L1 682 1230 -4975 358 270 55 57 chr12 45109886 45110304 -99172185 + L1MEc LINE L1 1100 1516 -4701 1597 275 73 35 chr12 45110435 45110825 -99171664 + L1MEc LINE L1 1875 2249 -3966 2281 115 0 3 chr12 45110825 45111129 -99171360 + AluSg1 SINE Alu 1 303 -6 1597 275 73 35 chr12 45111129 45112302 -99170187 + L1MEc LINE L1 2249 3445 -2770 1834 194 9 0 chr12 45112342 45112683 -99169806 - MER2 DNA MER2_type 0 344 1 270 116 0 0 chr12 45112698 45112741 -99169748 + (CA)n Simple_repeat Simple_repeat 1 43 0 1062 286 6 0 chr12 45112750 45113100 -99169389 + L1MEc LINE L1 3588 3939 -2276 1513 192 40 29 chr12 45113215 45113590 -99168899 - L1 LINE L1 -3544 2602 2224 2272 123 0 0 chr12 45113982 45114282 -99168207 - AluSx SINE Alu -12 300 1 344 310 84 65 chr12 45114705 45114860 -99167629 - L2 LINE L2 0 3272 3115 429 299 137 25 chr12 45115203 45115407 -99167082 - L2 LINE L2 -2 3270 3044 191 304 217 0 chr12 45115429 45115521 -99166968 + L2 LINE L2 3202 3313 0 254 171 14 0 chr12 45115825 45115895 -99166594 + GA-rich Low_complexity Low_complexity 2 72 0 329 250 67 17 chr12 45116664 45116844 -99165645 + L1ME4a LINE L1 5543 5731 -390 257 304 118 28 chr12 45116865 45117154 -99165335 + L1ME4a LINE L1 5805 6119 -2 25 65 0 0 chr12 45117157 45117203 -99165286 + AT_rich Low_complexity Low_complexity 1 46 0 856 257 19 19 chr12 45118208 45118465 -99164024 + MIR SINE MIR 6 262 0 219 225 42 14 chr12 45118795 45118866 -99163623 + MIR SINE MIR 70 142 -66 1798 106 23 0 chr12 45119590 45119855 -99162634 + L1PA14 LINE L1 5890 6160 -1 1928 134 17 7 chr12 45119896 45120188 -99162301 + AluSx SINE Alu 1 295 -17 828 282 108 35 chr12 45120412 45120866 -99161623 - MLT1J LTR MaLR 0 511 25 982 121 64 0 chr12 45120878 45121035 -99161454 - AluSq SINE Alu -11 302 136 2320 63 10 7 chr12 45121037 45121338 -99161151 - AluY SINE Alu -9 302 1 474 284 82 0 chr12 45121341 45121475 -99161014 + MER5A DNA MER1_type 1 145 -44 4440 174 58 17 chr12 45122114 45123898 -99158591 - L1MA9 LINE L1 -40 6272 4404 360 267 74 30 chr12 45126898 45127033 -99155456 - MIR SINE MIR -110 152 12 795 163 0 0 chr12 45127485 45127638 -99154851 - L1MEc LINE L1 -3135 3080 2928 21 0 0 0 chr12 45127638 45127659 -99154830 + AT_rich Low_complexity Low_complexity 1 21 0 229 118 0 0 chr12 45127662 45127696 -99154793 + L1PA8 LINE L1 6099 6132 -40 * 22556 155 23 20 chr12 45127692 45133287 -99149202 - L1PA10 LINE L1 -46 6437 814 1888 238 70 23 chr12 45133298 45133709 -99148780 - L1MEc LINE L1 -3296 2919 2529 1385 197 75 14 chr12 45133709 45134003 -99148486 - AluJo SINE Alu 0 312 1 1888 238 70 23 chr12 45134003 45134438 -99148051 - L1MEc LINE L1 -3686 2529 2066 1293 245 72 33 chr12 45134441 45135013 -99147476 - L1MEc LINE L1 -4361 2035 1442 23 0 0 0 chr12 45135743 45135766 -99146723 + AT_rich Low_complexity Low_complexity 1 23 0 363 157 0 0 chr12 45136252 45136322 -99146167 + (TATG)n Simple_repeat Simple_repeat 2 71 0 2785 90 0 3 chr12 45136379 45136744 -99145745 - THE1B LTR MaLR 0 364 1 339 374 92 37 chr12 45137836 45138218 -99144271 + L2 LINE L2 2862 3264 -8 185 359 72 27 chr12 45138603 45138865 -99143624 + L2 LINE L2 2448 2721 -593 700 349 70 39 chr12 45140318 45141105 -99141384 + L2 LINE L2 2448 3267 -5 2135 131 35 3 chr12 45142601 45142945 -99139544 + THE1A LTR MaLR 1 355 0 11892 83 10 2 chr12 45142945 45144513 -99137976 + THE1A-int LTR MaLR 1 1580 0 2400 110 8 8 chr12 45144513 45144868 -99137621 + THE1A LTR MaLR 1 355 0 1221 282 20 25 chr12 45145050 45145561 -99136928 - HAL1 LINE L1 -318 2189 1682 187 224 24 82 chr12 45146385 45146470 -99136019 - MIR SINE MIR -130 132 53 217 308 93 61 chr12 45147396 45147643 -99134846 + L2 LINE L2 2530 2784 -530 1304 181 50 82 chr12 45149105 45149481 -99133008 + MLT1A2 LTR MaLR 1 364 -10 308 259 0 12 chr12 45149554 45149635 -99132854 + L2 LINE L2 3207 3286 -27 183 80 0 0 chr12 45149650 45149675 -99132814 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1385 241 32 3 chr12 45149847 45150192 -99132297 - L1MD3 LINE L1 -173 7822 7468 1768 177 45 20 chr12 45150247 45150603 -99131886 + MLT1A1 LTR MaLR 1 365 0 2160 117 0 0 chr12 45151806 45152112 -99130377 - AluSx SINE Alu 0 306 1 379 271 53 85 chr12 45152759 45152947 -99129542 - L1MEd LINE L1 -5934 185 4 319 250 25 0 chr12 45153455 45153535 -99128954 - MIR SINE MIR 0 262 181 261 331 32 57 chr12 45153878 45154035 -99128454 - L2 LINE L2 -9 3304 3152 252 281 101 105 chr12 45155413 45155636 -99126853 - MIR SINE MIR -24 238 15 539 346 5 0 chr12 45156038 45156226 -99126263 - MIR3 SINE MIR 0 208 20 513 294 44 39 chr12 45156332 45156512 -99125977 + MIR SINE MIR 18 198 -64 372 43 0 0 chr12 45156682 45156728 -99125761 + (CA)n Simple_repeat Simple_repeat 1 46 0 361 289 118 52 chr12 45156772 45157077 -99125412 - MLT1J LTR MaLR -95 416 92 525 104 0 0 chr12 45157678 45157755 -99124734 + (TG)n Simple_repeat Simple_repeat 1 77 0 220 118 0 0 chr12 45158264 45158298 -99124191 + MIR SINE MIR 215 248 -14 213 192 0 19 chr12 45158267 45158319 -99124170 + L2 LINE L2 3263 3313 0 * 22 0 0 0 chr12 45158661 45158683 -99123806 + AT_rich Low_complexity Low_complexity 1 22 0 555 278 73 21 chr12 45159098 45159289 -99123200 + MIR SINE MIR 18 218 -44 416 319 89 38 chr12 45159277 45159792 -99122697 + L2 LINE L2 2760 3298 -15 * 220 245 19 0 chr12 45159829 45159882 -99122607 + MIR SINE MIR 197 250 -12 187 294 20 0 chr12 45159928 45159979 -99122510 - L2 LINE L2 -213 3059 3008 285 29 0 0 chr12 45161421 45161455 -99121034 + (CA)n Simple_repeat Simple_repeat 1 34 0 268 233 95 17 chr12 45161529 45161645 -99120844 + L1ME LINE L1 89 213 -5992 1061 258 77 86 chr12 45161895 45162685 -99119804 + L1ME LINE L1 523 1305 -4900 285 332 15 24 chr12 45162813 45163018 -99119471 + HAL1 LINE L1 1449 1651 -856 323 296 27 27 chr12 45163307 45163531 -99118958 + L1ME LINE L1 2172 2355 -3860 * 334 235 157 6 chr12 45163530 45163696 -99118793 + L1ME LINE L1 5439 5629 -610 506 192 43 42 chr12 45163697 45163841 -99118648 + L1ME LINE L1 5752 5895 -352 970 182 6 0 chr12 45164138 45164297 -99118192 + FRAM SINE Alu 1 160 -6 468 269 122 0 chr12 45164383 45164539 -99117950 - MIR SINE MIR -51 211 37 1912 146 35 0 chr12 45164576 45164864 -99117625 + AluSx SINE Alu 1 298 -14 396 0 0 0 chr12 45165499 45165543 -99116946 + (TA)n Simple_repeat Simple_repeat 1 44 0 271 297 50 10 chr12 45165571 45165672 -99116817 + MIR SINE MIR 23 127 -135 735 262 24 67 chr12 45166152 45166506 -99115983 - MER34 LTR ERV1 -1 541 252 1775 176 0 14 chr12 45166506 45166796 -99115693 + AluJo SINE Alu 6 291 -21 735 262 24 67 chr12 45166796 45167038 -99115451 - MER34 LTR ERV1 -290 252 1 512 282 105 14 chr12 45167266 45167475 -99115014 + MIR SINE MIR 20 247 -15 21 36 0 0 chr12 45168961 45168989 -99113500 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 45169151 45169173 -99113316 + AT_rich Low_complexity Low_complexity 1 22 0 462 339 51 31 chr12 45174304 45174561 -99107928 + L3b LINE CR1 1288 1549 -34 5173 120 25 15 chr12 45174660 45175661 -99106828 + L1PA13 LINE L1 5153 6162 -1 21 0 0 0 chr12 45175684 45175705 -99106784 + AT_rich Low_complexity Low_complexity 1 21 0 424 226 24 61 chr12 45175926 45176090 -99106399 + MER5B DNA MER1_type 20 177 -1 240 86 0 0 chr12 45176258 45176293 -99106196 + (T)n Simple_repeat Simple_repeat 1 35 0 24 53 0 0 chr12 45179453 45179491 -99102998 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr12 45179818 45179849 -99102640 + AT_rich Low_complexity Low_complexity 1 31 0 1954 130 10 7 chr12 45181054 45181346 -99101143 + AluSq SINE Alu 1 293 -20 317 327 49 37 chr12 45181450 45181612 -99100877 + L2 LINE L2 2892 3055 -217 575 316 22 30 chr12 45181765 45181996 -99100493 - MIR SINE MIR -31 231 3 363 286 54 27 chr12 45182712 45182824 -99099665 + L2 LINE L2 3153 3267 -5 2565 40 0 7 chr12 45183315 45183612 -99098877 + AluY SINE Alu 1 295 -16 22 0 0 0 chr12 45183684 45183706 -99098783 + AT_rich Low_complexity Low_complexity 1 22 0 183 244 22 0 chr12 45184272 45184317 -99098172 + L2 LINE L2 1364 1409 -1905 282 346 49 0 chr12 45185191 45185272 -99097217 + L2 LINE L2 3192 3276 -37 198 270 286 0 chr12 45185307 45185370 -99097119 - L2 LINE L2 -37 3235 3155 180 191 0 44 chr12 45186694 45186762 -99095727 + GA-rich Low_complexity Low_complexity 5 69 0 399 41 0 0 chr12 45186941 45186990 -99095499 + (TG)n Simple_repeat Simple_repeat 1 49 0 2302 87 0 3 chr12 45187281 45187580 -99094909 - AluSx SINE Alu -14 298 1 2075 105 56 0 chr12 45188725 45189010 -99093479 - AluSq SINE Alu -4 309 9 258 306 35 12 chr12 45189226 45189311 -99093178 + L3 LINE CR1 1345 1431 -146 220 273 15 0 chr12 45189974 45190040 -99092449 + CT-rich Low_complexity Low_complexity 1 67 0 1079 257 102 42 chr12 45190893 45190933 -99091556 - MLT1G LTR MaLR 0 590 554 2156 128 0 0 chr12 45190933 45191238 -99091251 + AluSp SINE Alu 1 305 -8 1079 257 102 42 chr12 45191238 45191775 -99090714 - MLT1G LTR MaLR -36 554 12 453 329 43 6 chr12 45191831 45191992 -99090497 - MIR SINE MIR -74 188 22 354 45 0 0 chr12 45192669 45192713 -99089776 + (TG)n Simple_repeat Simple_repeat 1 44 0 1639 158 36 88 chr12 45193221 45193632 -99088857 - MLT1B LTR MaLR 0 390 1 461 354 40 0 chr12 45194053 45194228 -99088261 - MIR SINE MIR -70 192 11 3602 95 15 2 chr12 45194457 45194985 -99087504 + L1PA14 LINE L1 5627 6161 0 2452 281 156 43 chr12 45197260 45198420 -99084069 + L2 LINE L2 393 1707 -1607 2141 98 21 0 chr12 45198420 45198707 -99083782 + AluSx SINE Alu 1 293 -19 2452 281 156 43 chr12 45198707 45198800 -99083689 + L2 LINE L2 1707 1788 -1526 297 0 0 0 chr12 45199484 45199517 -99082972 + (TG)n Simple_repeat Simple_repeat 2 34 0 210 255 21 0 chr12 45201147 45201194 -99081295 + L3 LINE CR1 1529 1576 -1 334 263 0 0 chr12 45201479 45201559 -99080930 - ERVL LTR ERVL -5210 554 475 528 277 31 19 chr12 45201579 45201738 -99080751 + MLT2E LTR ERVL 330 490 -138 1055 257 104 25 chr12 45202161 45202697 -99079792 - MLT2E LTR ERVL -2 626 1 352 327 22 48 chr12 45203091 45203360 -99079129 + LTR67 LTR ERVL 262 523 -34 297 207 0 0 chr12 45203365 45203423 -99079066 - MER5A DNA MER1_type -105 84 27 2176 289 72 12 chr12 45203712 45204771 -99077718 + L2 LINE L2 2196 3313 0 228 252 17 50 chr12 45205279 45205398 -99077091 - L1ME4a LINE L1 -3 6118 6004 357 287 96 18 chr12 45205416 45205583 -99076906 - L1ME4a LINE L1 -199 5922 5743 1886 160 131 8 chr12 45205613 45205994 -99076495 + MSTA LTR MaLR 1 428 0 7914 143 113 10 chr12 45205996 45207418 -99075071 + MSTA-int LTR MaLR 3 1571 -9 1293 136 103 8 chr12 45207420 45207662 -99074827 + MSTA LTR MaLR 164 428 0 320 246 18 102 chr12 45208381 45208548 -99073941 - MIR SINE MIR -89 173 21 21 0 0 0 chr12 45208752 45208773 -99073716 + AT_rich Low_complexity Low_complexity 1 21 0 6078 143 43 41 chr12 45208957 45209196 -99073293 + L1MA7 LINE L1 4710 4947 -1344 302 77 0 0 chr12 45209196 45209235 -99073254 + MER4D LTR ERV1 760 798 -74 6078 143 43 41 chr12 45209235 45210539 -99071950 + L1MA7 LINE L1 4947 6291 0 220 357 10 0 chr12 45210615 45210713 -99071776 + MER5B DNA MER1_type 5 103 -75 401 299 8 22 chr12 45210892 45211026 -99071463 - MIR SINE MIR -11 251 120 3630 102 32 2 chr12 45211232 45211770 -99070719 - MER41A LTR ERV1 0 554 1 1994 97 17 10 chr12 45211795 45212084 -99070405 + AluSc SINE Alu 1 291 -18 238 259 14 7 chr12 45212105 45212254 -99070235 + CT-rich Low_complexity Low_complexity 1 150 0 2146 221 60 28 chr12 45212275 45212809 -99069680 - MER74A LTR ERVL -7 551 1 25 51 0 0 chr12 45212977 45213016 -99069473 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr12 45213188 45213219 -99069270 + AT_rich Low_complexity Low_complexity 1 31 0 431 314 54 27 chr12 45213927 45214112 -99068377 - MIR SINE MIR -59 203 14 201 232 36 18 chr12 45215333 45215389 -99067100 + MIR3 SINE MIR 152 208 0 22 0 0 0 chr12 45217205 45217227 -99065262 + AT_rich Low_complexity Low_complexity 1 22 0 201 354 38 13 chr12 45217812 45217891 -99064598 - MIR3 SINE MIR -24 184 104 1457 211 36 11 chr12 45217895 45218251 -99064238 + MLT1A1 LTR MaLR 1 365 0 876 182 4 103 chr12 45218559 45218801 -99063688 - MER20 DNA MER1_type -1 218 1 202 244 0 0 chr12 45218883 45218924 -99063565 + GA-rich Low_complexity Low_complexity 3 43 0 225 206 78 108 chr12 45220829 45220931 -99061558 + AluSg SINE Alu 38 136 -164 252 0 0 0 chr12 45222522 45222550 -99059939 + (TG)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr12 45222549 45222577 -99059912 + (GA)n Simple_repeat Simple_repeat 1 28 0 14971 123 23 11 chr12 45222991 45225382 -99057107 - Tigger1 DNA MER2_type 0 2418 1 837 111 0 15 chr12 45225749 45225884 -99056605 + FLAM_C SINE Alu 1 133 0 598 124 9 9 chr12 45225958 45226071 -99056418 + (TTTC)n Simple_repeat Simple_repeat 4 116 0 980 356 83 22 chr12 45226185 45227166 -99055323 + L2 LINE L2 1819 3312 -1 1574 206 64 40 chr12 45228754 45229205 -99053284 + MLT1C LTR MaLR 6 467 0 587 350 140 38 chr12 45229209 45230176 -99052313 + L2 LINE L2 1733 2797 -517 237 296 228 4 chr12 45230206 45230456 -99052033 + L2 LINE L2 2959 3264 -8 274 254 70 28 chr12 45231238 45231380 -99051109 - L1ME4a LINE L1 -14 6107 5960 207 0 0 0 chr12 45231586 45231609 -99050880 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 248 278 104 35 chr12 45231704 45231947 -99050542 - L1ME4a LINE L1 -542 5579 5321 26 64 0 0 chr12 45232074 45232121 -99050368 + AT_rich Low_complexity Low_complexity 1 47 0 228 302 50 32 chr12 45232201 45232479 -99050010 - L1ME4a LINE L1 -1090 5056 4774 4216 174 63 31 chr12 45232824 45233650 -99048839 - MER21B LTR ERV1 -11 852 1 2171 128 28 28 chr12 45233848 45234207 -99048282 - THE1B LTR MaLR -5 359 1 21 36 0 0 chr12 45234280 45234308 -99048181 + AT_rich Low_complexity Low_complexity 1 28 0 403 309 93 71 chr12 45234445 45234937 -99047552 - L1ME4a LINE L1 -2310 3836 3334 9604 198 53 5 chr12 45235287 45238168 -99044321 + L1PA15 LINE L1 3236 6165 0 311 331 39 34 chr12 45238475 45238653 -99043836 - L1ME4a LINE L1 -3734 2412 2234 301 382 6 13 chr12 45238850 45239007 -99043482 + L2 LINE L2 2002 2157 -1157 201 327 0 0 chr12 45239005 45239057 -99043432 - L2 LINE L2 -233 3039 2988 * 223 261 62 0 chr12 45239075 45239140 -99043349 + L2 LINE L2 2183 2251 -1063 268 324 56 42 chr12 45239409 45239551 -99042938 + L2 LINE L2 3170 3313 0 23 0 0 0 chr12 45240919 45240942 -99041547 + AT_rich Low_complexity Low_complexity 1 23 0 276 150 0 0 chr12 45240955 45240995 -99041494 - Alu SINE Alu -263 40 1 270 229 0 0 chr12 45241044 45241114 -99041375 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 0 0 0 chr12 45241714 45241740 -99040749 + AT_rich Low_complexity Low_complexity 1 26 0 2105 135 0 0 chr12 45242361 45242657 -99039832 - AluSx SINE Alu -16 296 1 313 218 71 100 chr12 45242867 45243037 -99039452 - MIR SINE MIR -52 210 46 425 106 149 11 chr12 45243401 45243495 -99038994 - MER5C DNA MER1_type -143 181 75 564 218 182 6 chr12 45243587 45243757 -99038732 + MIR SINE MIR 36 235 -27 1429 182 42 10 chr12 45244722 45245030 -99037459 + MER33 DNA MER1_type 2 319 -5 351 248 96 8 chr12 45245334 45245459 -99037030 - MIR SINE MIR -81 181 46 21 36 0 0 chr12 45245672 45245700 -99036789 + AT_rich Low_complexity Low_complexity 1 28 0 191 256 85 61 chr12 45246763 45246845 -99035644 - L3b LINE CR1 -324 1259 1176 1417 284 67 52 chr12 45247379 45247977 -99034512 + ERVL-E LTR ERVL 4825 5431 -333 377 289 59 7 chr12 45248146 45248281 -99034208 + ERVL-E LTR ERVL 5604 5745 -19 397 352 7 0 chr12 45248302 45248444 -99034045 + MLT2E LTR ERVL 34 176 -452 267 300 103 43 chr12 45248421 45248768 -99033721 + MLT2E LTR ERVL 320 621 -7 * 24 0 0 0 chr12 45248841 45248865 -99033624 + AT_rich Low_complexity Low_complexity 1 24 0 342 284 10 0 chr12 45249673 45249775 -99032714 - MLT1L LTR MaLR 0 615 513 2360 165 26 2 chr12 45249920 45250338 -99032151 + MSTA LTR MaLR 1 428 0 277 247 45 0 chr12 45250609 45250698 -99031791 + L1 LINE L1 2989 3081 -3065 313 212 0 9 chr12 45250745 45250858 -99031631 + L1 LINE L1 3080 3191 -2955 1446 140 67 74 chr12 45250858 45251143 -99031346 + AluJo SINE Alu 1 283 -29 463 160 113 0 chr12 45251143 45251249 -99031240 + MER5C DNA MER1_type 71 188 -136 4270 195 40 4 chr12 45251362 45252328 -99030161 + L1 LINE L1 3176 4176 -1970 236 77 26 0 chr12 45253087 45253126 -99029363 + (TA)n Simple_repeat Simple_repeat 1 40 0 264 344 178 32 chr12 45253276 45254155 -99028334 + L2 LINE L2 1611 2617 -697 * 304 242 74 21 chr12 45254124 45254219 -99028270 + L2 LINE L2 3173 3272 0 23 33 0 0 chr12 45256091 45256121 -99026368 + AT_rich Low_complexity Low_complexity 1 30 0 228 352 80 37 chr12 45256402 45256564 -99025925 + L2 LINE L2 2931 3099 -173 327 258 152 32 chr12 45257227 45257444 -99025045 - L1ME4a LINE L1 -111 6010 5768 223 102 20 20 chr12 45257459 45257508 -99024981 + (TA)n Simple_repeat Simple_repeat 1 49 0 23 33 0 0 chr12 45257523 45257553 -99024936 + AT_rich Low_complexity Low_complexity 1 30 0 456 346 120 37 chr12 45257808 45258645 -99023844 - L2 LINE L2 -17 3296 2378 2180 119 16 0 chr12 45259021 45259324 -99023165 + AluSq SINE Alu 6 313 0 353 19 0 57 chr12 45259402 45259455 -99023034 - L1PA3 LINE L1 -3 6152 6103 268 293 91 0 chr12 45259484 45259583 -99022906 + MER117 DNA MER1_type 3 110 -87 2364 181 9 12 chr12 45259640 45260071 -99022418 - MLT2C2 LTR ERVL -34 430 1 214 291 205 0 chr12 45261895 45262012 -99020477 - MIR SINE MIR -81 181 41 512 261 23 45 chr12 45263499 45263675 -99018814 + L2 LINE L2 3142 3313 0 519 319 157 30 chr12 45265323 45265934 -99016555 + L2 LINE L2 1945 2633 -681 1965 164 3 0 chr12 45266064 45266375 -99016114 - AluJb SINE Alu 0 312 1 230 200 200 0 chr12 45266375 45266435 -99016054 + L2 LINE L2 2687 2758 -556 235 227 30 45 chr12 45267005 45267071 -99015418 - MER91A DNA MER1_type -9 187 123 1986 218 82 18 chr12 45267967 45268480 -99014009 + LTR38 LTR ERV1 1 546 -10 613 192 0 23 chr12 45268644 45268774 -99013715 + L1MC1 LINE L1 5286 5412 -2630 3726 158 41 22 chr12 45268779 45269514 -99012975 + L1MC1 LINE L1 5585 6333 0 269 284 199 5 chr12 45271859 45272060 -99010429 + L2 LINE L2 1863 2102 -1212 1826 170 109 3 chr12 45273582 45273940 -99008549 - MSTD LTR MaLR 0 396 1 316 264 118 42 chr12 45274555 45274699 -99007790 + MLT1J2 LTR MaLR 270 424 -26 231 88 0 0 chr12 45274870 45274904 -99007585 + (GA)n Simple_repeat Simple_repeat 1 34 0 5576 158 41 23 chr12 45275003 45275776 -99006713 + L1MC1 LINE L1 5096 5854 -479 2564 110 3 6 chr12 45275776 45276141 -99006348 + THE1B LTR MaLR 1 364 0 9868 113 47 31 chr12 45276141 45277696 -99004793 + THE1B-int LTR MaLR 1 1580 0 2276 147 11 3 chr12 45277696 45278057 -99004432 + THE1B LTR MaLR 1 364 0 5576 158 41 23 chr12 45278057 45278477 -99004012 + L1MC1 LINE L1 5853 6314 -19 29 0 0 0 chr12 45278762 45278791 -99003698 + AT_rich Low_complexity Low_complexity 1 29 0 223 388 7 27 chr12 45279048 45279195 -99003294 + L2 LINE L2 2600 2743 -571 4248 193 30 33 chr12 45279211 45280382 -99002107 - L1MB3 LINE L1 -7 6176 5028 * 5600 225 51 12 chr12 45280375 45281982 -99000507 - L1MB3 LINE L1 -1594 4552 2883 186 347 69 14 chr12 45282367 45282439 -99000050 + L2 LINE L2 3121 3196 -76 246 241 17 0 chr12 45282609 45282667 -98999822 + Tigger1 DNA MER2_type 1 59 -2359 228 143 0 0 chr12 45282669 45282711 -98999778 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 1682 139 27 57 chr12 45282713 45283014 -98999475 - AluJb SINE Alu -20 292 1 14738 135 24 2 chr12 45283078 45285389 -98997100 + Tigger1 DNA MER2_type 57 2418 0 294 210 100 10 chr12 45285432 45285532 -98996957 - L2 LINE L2 -216 3056 2948 407 291 64 1 chr12 45286684 45286844 -98995645 + MLT1J2 LTR MaLR 3 173 -274 29 28 0 0 chr12 45287315 45287351 -98995138 + AT_rich Low_complexity Low_complexity 1 36 0 297 253 0 55 chr12 45288333 45288424 -98994065 - MIR SINE MIR -60 202 117 488 392 48 39 chr12 45288537 45288953 -98993536 + L2 LINE L2 2804 3223 -49 186 103 0 0 chr12 45288980 45289009 -98993480 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 357 309 114 8 chr12 45291500 45291623 -98990866 + L2 LINE L2 3117 3252 -20 27 49 0 0 chr12 45292545 45292586 -98989903 + AT_rich Low_complexity Low_complexity 1 41 0 230 328 15 15 chr12 45293237 45293371 -98989118 + Charlie7 DNA MER1_type 1 134 -2478 2478 252 65 24 chr12 45293391 45294246 -98988243 - L1ME3A LINE L1 -14 6156 5269 1200 149 29 36 chr12 45294254 45294615 -98987874 + MSTB1 LTR MaLR 3 431 -1 283 175 0 16 chr12 45294627 45294690 -98987799 - L1ME3A LINE L1 -903 5243 5182 1141 297 99 11 chr12 45294697 45295243 -98987246 + Charlie7 DNA MER1_type 131 724 -1888 285 123 18 0 chr12 45295236 45295293 -98987196 + Charlie7 DNA MER1_type 2421 2478 -134 * 302 245 0 11 chr12 45298279 45298373 -98984116 + CT-rich Low_complexity Low_complexity 2 94 0 215 340 50 30 chr12 45298631 45298731 -98983758 + L2 LINE L2 3208 3309 -4 251 224 0 59 chr12 45298915 45299000 -98983489 + A-rich Low_complexity Low_complexity 1 80 0 2138 101 7 24 chr12 45300962 45301260 -98981229 - AluSx SINE Alu -19 293 1 618 364 60 33 chr12 45301306 45301885 -98980604 + L2 LINE L2 2164 2758 -556 425 91 57 0 chr12 45302444 45302532 -98979957 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 216 0 0 0 chr12 45303189 45303213 -98979276 + (A)n Simple_repeat Simple_repeat 1 24 0 629 332 40 16 chr12 45304767 45305014 -98977475 - L3b LINE CR1 -218 1365 1113 587 174 0 0 chr12 45305526 45305624 -98976865 + FRAM SINE Alu 53 150 -26 432 55 0 0 chr12 45305624 45305679 -98976810 + (AATAG)n Simple_repeat Simple_repeat 1 55 0 386 345 28 0 chr12 45305680 45305825 -98976664 + MIR SINE MIR 54 202 -60 287 335 46 30 chr12 45306092 45306328 -98976161 - L2 LINE L2 -264 3008 2767 218 316 51 0 chr12 45307227 45307306 -98975183 + MIR SINE MIR 73 155 -107 296 311 48 10 chr12 45307564 45307667 -98974822 + MIR SINE MIR 26 132 -130 1645 198 10 3 chr12 45307681 45307974 -98974515 - MLT2B1 LTR ERVL 0 520 226 11412 188 55 22 chr12 45307974 45308114 -98974375 - ERVL-B1 LTR ERVL -3360 2404 2270 2165 125 0 0 chr12 45308114 45308411 -98974078 - AluSx SINE Alu -15 297 1 11412 188 55 22 chr12 45308411 45310595 -98971894 - ERVL-B1 LTR ERVL -3494 2270 2 2685 177 62 18 chr12 45310596 45311094 -98971395 - MLT2B1 LTR ERVL 0 520 1 232 303 53 0 chr12 45311095 45311171 -98971318 + MIR SINE MIR 149 228 -34 2226 106 7 0 chr12 45311232 45311535 -98970954 - AluSx SINE Alu -7 305 1 193 326 11 54 chr12 45311969 45312061 -98970428 + L3b LINE CR1 1419 1506 -77 472 306 201 10 chr12 45312939 45313148 -98969341 - MIR SINE MIR -8 254 6 371 274 121 91 chr12 45313533 45313963 -98968526 - MLT1J LTR MaLR -50 461 19 692 338 118 41 chr12 45313972 45314714 -98967775 - L2 LINE L2 -674 2640 1822 2135 130 3 0 chr12 45314714 45315013 -98967476 + AluSx SINE Alu 1 300 -12 692 338 118 41 chr12 45315013 45315128 -98967361 - L2 LINE L2 -1492 1822 1717 429 345 44 24 chr12 45315148 45315400 -98967089 - L2 LINE L2 -1751 1563 1307 226 309 116 24 chr12 45315520 45315892 -98966597 - L1M4 LINE L1 -1702 4444 4039 346 336 85 51 chr12 45315909 45316204 -98966285 - L2 LINE L2 -10 3303 2999 479 335 74 65 chr12 45316420 45316973 -98965516 - L1M4 LINE L1 -2167 3979 3422 342 323 118 26 chr12 45316982 45317177 -98965312 + L2 LINE L2 2577 2789 -525 333 324 106 40 chr12 45317269 45317544 -98964945 + L2 LINE L2 2915 3207 -65 188 326 12 35 chr12 45320791 45320877 -98961612 - L2 LINE L2 -4 3268 3185 2024 174 60 24 chr12 45321259 45321672 -98960817 + MSTC LTR MaLR 1 428 0 283 301 118 13 chr12 45322001 45322154 -98960335 - MIR SINE MIR -2 260 92 24 0 0 0 chr12 45322991 45323015 -98959474 + AT_rich Low_complexity Low_complexity 1 24 0 418 333 51 6 chr12 45324785 45324962 -98957527 - MIR SINE MIR -76 186 2 231 354 0 0 chr12 45325086 45325182 -98957307 - L1ME LINE L1 -573 5597 5502 626 284 57 83 chr12 45325182 45325640 -98956849 + MLT1J LTR MaLR 1 446 -65 391 286 29 0 chr12 45325686 45325826 -98956663 - L1MEd LINE L1 -5973 146 3 1675 289 40 2 chr12 45326028 45326474 -98956015 + L1M4b LINE L1 2 464 -6395 4170 227 59 40 chr12 45326486 45327767 -98954722 + L1M4b LINE L1 524 1826 -5029 1131 247 62 11 chr12 45327778 45328151 -98954338 + L1M4b LINE L1 1958 2349 -4610 238 236 78 140 chr12 45328435 45328684 -98953805 + L1M4b LINE L1 2473 2691 -4447 1589 154 82 18 chr12 45328684 45328963 -98953526 + AluJb SINE Alu 1 297 -15 238 236 78 140 chr12 45328963 45329099 -98953390 + L1M4b LINE L1 2691 2834 -4304 25 0 0 0 chr12 45329110 45329135 -98953354 + AT_rich Low_complexity Low_complexity 1 25 0 4128 245 51 38 chr12 45329144 45329692 -98952797 + L1MEc LINE L1 1823 2362 -3853 1958 158 3 10 chr12 45329692 45330003 -98952486 + AluSx SINE Alu 1 309 -3 4128 245 51 38 chr12 45330003 45331324 -98951165 + L1MEc LINE L1 2362 3684 -2531 1586 221 20 33 chr12 45331358 45331753 -98950736 + MLT1A1 LTR MaLR 28 361 -4 1398 176 43 81 chr12 45331827 45331879 -98950610 + L1MB8 LINE L1 5262 5314 -870 2286 94 10 7 chr12 45331879 45332186 -98950303 + AluY SINE Alu 1 308 -3 1398 176 43 81 chr12 45332186 45332530 -98949959 + L1MB8 LINE L1 5314 5643 -541 1032 201 149 62 chr12 45332534 45332598 -98949891 - MER31B LTR ERV1 -7 459 402 2425 114 37 0 chr12 45332598 45332949 -98949540 + THE1B LTR MaLR 1 364 0 1032 201 149 62 chr12 45332949 45333306 -98949183 - MER31B LTR ERV1 -64 402 1 1952 187 86 20 chr12 45333306 45333804 -98948685 + L1MB8 LINE L1 5642 6172 -6 297 311 54 66 chr12 45334068 45334235 -98948254 - MIR3 SINE MIR -31 177 13 1625 216 22 11 chr12 45334389 45334750 -98947739 + MLT1A1 LTR MaLR 1 365 0 452 271 30 25 chr12 45335190 45335389 -98947100 - L1ME3A LINE L1 -1 6169 5970 276 258 153 61 chr12 45335576 45335739 -98946750 - MER5B DNA MER1_type 0 178 1 893 270 135 11 chr12 45337067 45337423 -98945066 + MLT1L LTR MaLR 212 611 -4 28 0 0 0 chr12 45337612 45337640 -98944849 + AT_rich Low_complexity Low_complexity 1 28 0 203 167 0 0 chr12 45337708 45337744 -98944745 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 260 253 77 22 chr12 45338162 45338253 -98944236 + MER91C DNA MER1_type 26 121 -19 225 301 36 0 chr12 45338351 45338434 -98944055 + L2 LINE L2 3187 3272 0 1284 254 130 32 chr12 45338546 45339014 -98943475 - MLT1H1 LTR MaLR -31 524 11 180 77 0 0 chr12 45340760 45340786 -98941703 + (TG)n Simple_repeat Simple_repeat 2 27 0 25 0 0 0 chr12 45341360 45341385 -98941104 + AT_rich Low_complexity Low_complexity 1 25 0 237 169 0 0 chr12 45341660 45341719 -98940770 + GA-rich Low_complexity Low_complexity 2 60 0 361 317 28 21 chr12 45342322 45342464 -98940025 - MIR SINE MIR -11 251 109 21 0 0 0 chr12 45342572 45342593 -98939896 + AT_rich Low_complexity Low_complexity 1 21 0 1714 139 0 77 chr12 45344078 45344266 -98938223 - AluJo SINE Alu -13 299 145 2287 109 3 6 chr12 45344266 45344577 -98937912 - AluSq SINE Alu -3 310 1 1714 139 0 77 chr12 45344577 45344711 -98937778 - AluJo SINE Alu -167 145 2 540 99 40 10 chr12 45345951 45346052 -98936437 + GA-rich Low_complexity Low_complexity 3 106 0 225 196 0 0 chr12 45346086 45346132 -98936357 + T-rich Low_complexity Low_complexity 1 46 0 487 271 153 30 chr12 45346541 45346744 -98935745 + MIR SINE MIR 29 256 -6 271 307 163 26 chr12 45347045 45347198 -98935291 - MIR3 SINE MIR -25 183 10 838 238 0 57 chr12 45347592 45347819 -98934670 + L2 LINE L2 2452 2665 -649 189 0 0 0 chr12 45348601 45348622 -98933867 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 * 207 0 0 0 chr12 45348621 45348644 -98933845 + (TG)n Simple_repeat Simple_repeat 2 24 0 229 338 62 89 chr12 45348878 45349248 -98933241 - L2 LINE L2 -19 3253 2894 1674 244 69 67 chr12 45349393 45349458 -98933031 - MLT1G LTR MaLR -8 582 519 2367 147 44 5 chr12 45349458 45349867 -98932622 - MSTA LTR MaLR 0 428 4 1674 244 69 67 chr12 45349867 45350382 -98932107 - MLT1G LTR MaLR -71 519 1 1069 206 116 4 chr12 45350880 45351156 -98931333 - MER5C DNA MER1_type -17 307 1 515 281 41 12 chr12 45351985 45352156 -98930333 - MER5B DNA MER1_type -2 176 1 2151 119 125 13 chr12 45352368 45352753 -98929736 + MSTA LTR MaLR 1 428 0 2126 137 0 0 chr12 45353266 45353566 -98928923 + AluSg SINE Alu 1 300 -10 376 122 54 0 chr12 45354210 45354284 -98928205 - L1MA7 LINE L1 -4 6287 6210 1600 136 11 17 chr12 45354287 45354574 -98927915 + L1MA7 LINE L1 5912 6196 -95 22 80 0 0 chr12 45354614 45354664 -98927825 + AT_rich Low_complexity Low_complexity 1 50 0 1227 223 4 16 chr12 45354830 45355072 -98927417 - MER8 DNA MER2_type 0 239 1 22 56 0 0 chr12 45355512 45355548 -98926941 + AT_rich Low_complexity Low_complexity 1 36 0 2225 115 0 0 chr12 45355589 45355884 -98926605 - AluSx SINE Alu -17 295 1 330 339 116 42 chr12 45356400 45356710 -98925779 + L1MEd LINE L1 52 384 -5735 363 271 77 6 chr12 45357906 45358076 -98924413 + MER113 DNA MER1_type? 3 184 -337 443 209 85 62 chr12 45358328 45358457 -98924032 + MIR SINE MIR 16 147 -61 808 290 8 0 chr12 45359207 45359466 -98923023 - MIR SINE MIR 0 262 2 264 77 0 0 chr12 45359954 45359993 -98922496 + (TG)n Simple_repeat Simple_repeat 2 40 0 1824 146 48 7 chr12 45361652 45361946 -98920543 - AluSx SINE Alu -6 306 1 1622 251 118 9 chr12 45362875 45363522 -98918967 - L1ME3A LINE L1 -7 6224 5494 628 219 0 59 chr12 45363541 45363710 -98918779 - L1ME1 LINE L1 -44 6122 5964 1411 263 68 50 chr12 45363751 45364485 -98918004 - L1ME3A LINE L1 -4922 1474 723 2444 74 0 3 chr12 45364485 45364794 -98917695 - AluY SINE Alu -3 308 1 1411 263 68 50 chr12 45364794 45364874 -98917615 - L1ME3A LINE L1 -5673 723 646 204 68 45 23 chr12 45364972 45365016 -98917473 + (TA)n Simple_repeat Simple_repeat 1 45 0 351 0 0 0 chr12 45365028 45365067 -98917422 + (CA)n Simple_repeat Simple_repeat 2 40 0 2063 200 23 8 chr12 45365613 45366003 -98916486 + MSTD LTR MaLR 1 396 0 25 0 0 0 chr12 45366115 45366140 -98916349 + AT_rich Low_complexity Low_complexity 1 25 0 200 311 39 48 chr12 45366236 45366339 -98916150 - L2 LINE L2 -48 3265 3164 1022 243 55 101 chr12 45367193 45367757 -98914732 + MER34 LTR ERV1 2 539 -3 325 333 41 48 chr12 45367809 45367956 -98914533 + MIR3 SINE MIR 17 162 -46 2389 143 67 0 chr12 45369489 45369894 -98912595 + MSTB1 LTR MaLR 1 432 0 508 167 0 0 chr12 45370011 45370085 -98912404 + Tigger5 DNA MER2_type 1 74 -2249 380 244 0 0 chr12 45370085 45370167 -98912322 - Tigger5 DNA MER2_type 0 2323 2242 * 404 169 13 13 chr12 45370162 45370239 -98912250 + Tigger5 DNA MER2_type 2247 2323 0 23 78 0 0 chr12 45370446 45370497 -98911992 + AT_rich Low_complexity Low_complexity 1 51 0 2415 81 3 0 chr12 45370716 45371014 -98911475 + AluY SINE Alu 6 304 -7 604 217 25 25 chr12 45372616 45372773 -98909716 - MIR SINE MIR -1 261 105 1250 238 32 32 chr12 45372928 45372948 -98909541 - MLT1A2 LTR MaLR -2 372 353 2635 106 0 8 chr12 45372948 45373326 -98909163 - THE1C LTR MaLR 0 375 1 10405 111 20 25 chr12 45373326 45374914 -98907575 - THE1C-int LTR MaLR 0 1580 1 2795 84 0 11 chr12 45374914 45375293 -98907196 - THE1C LTR MaLR 0 375 1 1250 238 32 32 chr12 45375293 45375577 -98906912 - MLT1A2 LTR MaLR -18 356 66 436 125 10 226 chr12 45375577 45375785 -98906704 - MER51C LTR ERV1 -2 632 470 469 163 25 0 chr12 45376063 45376143 -98906346 - MLT1A2 LTR MaLR -292 82 1 237 337 36 0 chr12 45376354 45376437 -98906052 + MIR SINE MIR 13 98 -164 300 311 163 36 chr12 45376437 45376633 -98905856 + MIR SINE MIR 29 249 -13 244 211 26 114 chr12 45377898 45378012 -98904477 - MLT1H LTR MaLR -2 547 444 628 309 98 30 chr12 45378442 45378548 -98903941 - L1M4 LINE L1 -1891 4255 4158 4910 35 19 0 chr12 45378548 45379140 -98903349 - L1PA5 LINE L1 0 6154 5552 628 309 98 30 chr12 45379140 45379800 -98902689 - L1M4 LINE L1 -1988 4158 3437 403 281 101 62 chr12 45379960 45380457 -98902032 - L1M4 LINE L1 -2777 3369 2814 2555 283 92 14 chr12 45380458 45380792 -98901697 - L2 LINE L2 -2285 1029 723 2232 110 75 20 chr12 45380792 45381137 -98901352 + THE1B LTR MaLR 1 364 0 2555 283 92 14 chr12 45381137 45381613 -98900876 - L2 LINE L2 -2591 723 134 1959 107 34 17 chr12 45381613 45381904 -98900585 - AluSq SINE Alu -17 296 1 2555 283 92 14 chr12 45381904 45382025 -98900464 - L2 LINE L2 -3180 134 24 480 332 106 35 chr12 45382383 45382759 -98899730 + L2 LINE L2 2911 3313 0 7334 164 7 2 chr12 45383990 45386298 -98896191 - L1PB1 LINE L1 -3 6148 3829 200 214 18 0 chr12 45386422 45386478 -98896011 + (TA)n Simple_repeat Simple_repeat 1 57 0 288 219 109 51 chr12 45386720 45386857 -98895632 + L1P5 LINE L1 5321 5465 -686 347 255 64 66 chr12 45387249 45387520 -98894969 + L1M4 LINE L1 4885 5155 -991 1587 196 3 17 chr12 45387520 45387816 -98894673 + AluJb SINE Alu 1 292 -20 347 255 64 66 chr12 45387816 45387895 -98894594 + L1M4 LINE L1 5155 5233 -913 258 271 47 24 chr12 45387941 45388026 -98894463 + L1MEd LINE L1 1 87 -6032 513 246 67 116 chr12 45388559 45388888 -98893601 + L1MEd LINE L1 785 1097 -5022 240 298 50 18 chr12 45388899 45389117 -98893372 + L1MEd LINE L1 1163 1387 -4923 365 297 109 24 chr12 45389130 45389295 -98893194 + HAL1 LINE L1 1475 1653 -854 2381 87 0 0 chr12 45389451 45389760 -98892729 - AluY SINE Alu -2 309 1 24 0 0 0 chr12 45389795 45389819 -98892670 + AT_rich Low_complexity Low_complexity 1 24 0 207 339 0 40 chr12 45389991 45390115 -98892374 + A-rich Low_complexity Low_complexity 1 119 0 * 326 261 11 11 chr12 45390041 45390133 -98892356 + GA-rich Low_complexity Low_complexity 5 96 0 4801 173 36 4 chr12 45390342 45391403 -98891086 - L1MB2 LINE L1 -2 6169 5077 324 267 18 0 chr12 45391448 45391613 -98890876 + L1MEd LINE L1 3055 3222 -2907 591 243 126 5 chr12 45391821 45392035 -98890454 + MIR SINE MIR 13 252 -10 264 344 53 0 chr12 45392460 45392591 -98889898 + L2 LINE L2 3175 3312 -1 269 293 8 113 chr12 45392728 45392760 -98889729 + MIR SINE MIR 24 58 -150 2201 57 3 108 chr12 45392760 45393095 -98889394 + AluY SINE Alu 12 311 0 269 293 8 113 chr12 45393095 45393195 -98889294 + MIR SINE MIR 58 142 -66 383 294 10 0 chr12 45393328 45393430 -98889059 - MIR SINE MIR -71 191 89 397 231 94 0 chr12 45393917 45394034 -98888455 + L1MCc LINE L1 11 138 -6285 268 251 43 101 chr12 45394116 45394323 -98888166 + L1MCc LINE L1 266 460 -5963 1893 155 0 22 chr12 45394768 45395085 -98887404 + AluJb SINE Alu 1 310 -2 2354 256 74 70 chr12 45395184 45396331 -98886158 + L1MCc LINE L1 1130 2270 -4671 216 0 0 0 chr12 45396331 45396355 -98886134 + (TG)n Simple_repeat Simple_repeat 1 24 0 2354 256 74 70 chr12 45396355 45397430 -98885059 + L1MCc LINE L1 2270 3560 -3381 1731 121 0 82 chr12 45397448 45397859 -98884630 + L1MA4A LINE L1 5601 5955 -201 875 237 92 19 chr12 45397892 45398217 -98884272 + L1ME2 LINE L1 5806 6154 -10 252 254 0 0 chr12 45398421 45398492 -98883997 + (TA)n Simple_repeat Simple_repeat 2 72 0 33 73 0 0 chr12 45398518 45398586 -98883903 + AT_rich Low_complexity Low_complexity 1 68 0 189 250 23 0 chr12 45399310 45399354 -98883135 + L2 LINE L2 3183 3227 -86 181 380 20 10 chr12 45399493 45399593 -98882896 - L3 LINE CR1 -1017 560 460 351 286 71 127 chr12 45399638 45400016 -98882473 + L2 LINE L2 2866 3222 -50 21 0 0 0 chr12 45401420 45401441 -98881048 + AT_rich Low_complexity Low_complexity 1 21 0 220 250 0 0 chr12 45401908 45401948 -98880541 - L3b LINE CR1 -253 1330 1291 22 35 0 0 chr12 45403785 45403814 -98878675 + AT_rich Low_complexity Low_complexity 1 29 0 278 297 50 20 chr12 45406508 45406609 -98875880 - MER5A DNA MER1_type -77 112 9 227 154 0 19 chr12 45409302 45409354 -98873135 + CT-rich Low_complexity Low_complexity 3 53 0 586 265 8 0 chr12 45410275 45410407 -98872082 + MIR SINE MIR 19 151 -111 326 276 18 65 chr12 45411709 45411879 -98870610 - MER103 DNA DNA -3 163 2 407 297 39 45 chr12 45412222 45412606 -98869883 - L1MEd LINE L1 -993 1497 1024 26 30 0 0 chr12 45413366 45413399 -98869090 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr12 45414360 45414381 -98868108 + AT_rich Low_complexity Low_complexity 1 21 0 2952 129 32 6 chr12 45415345 45415841 -98866648 - L1MA4 LINE L1 -11 6289 5781 5495 142 163 26 chr12 45415841 45416975 -98865514 + pTR5 LTR ERV1 743 2032 -406 321 198 33 22 chr12 45416975 45417066 -98865423 + LTR30 LTR ERV1 551 642 -80 1556 87 50 0 chr12 45417072 45417291 -98865198 + LTR12 LTR ERV1 485 714 0 680 126 27 0 chr12 45417291 45417402 -98865087 - L1MA4 LINE L1 -516 5784 5671 1222 152 68 29 chr12 45417652 45417962 -98864527 + MER33 DNA MER1_type 3 324 0 246 32 0 0 chr12 45418105 45418136 -98864353 + (TG)n Simple_repeat Simple_repeat 2 32 0 417 334 107 53 chr12 45418143 45418972 -98863517 + L2 LINE L2 1189 2062 -1252 422 306 140 6 chr12 45419102 45419259 -98863230 + MER5B DNA MER1_type 1 178 0 42478 36 24 2 chr12 45419428 45425452 -98857037 + L1PA3 LINE L1 1 6155 0 223 250 0 0 chr12 45425602 45425658 -98856831 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 233 345 163 5 chr12 45426450 45426653 -98855836 - L2 LINE L2 -1034 2280 2046 298 354 8 8 chr12 45426662 45426789 -98855700 + L2 LINE L2 2989 3115 -198 189 214 0 0 chr12 45426793 45426835 -98855654 + GA-rich Low_complexity Low_complexity 4 45 0 253 333 9 9 chr12 45426846 45426957 -98855532 - Charlie8 DNA MER1_type -2192 225 115 277 299 0 0 chr12 45426957 45427044 -98855445 + HsTC2 DNA Tc2 1 87 -1811 214 222 0 37 chr12 45427428 45427482 -98855007 + GA-rich Low_complexity Low_complexity 3 54 0 489 322 48 18 chr12 45428658 45428885 -98853604 + MIR SINE MIR 3 236 -26 477 330 87 50 chr12 45429381 45429738 -98852751 - L2 LINE L2 -10 3262 2893 2442 183 78 11 chr12 45429762 45430286 -98852203 - MER89 LTR ERV1 0 559 1 2256 135 25 0 chr12 45431589 45431944 -98850545 - THE1B LTR MaLR 0 364 1 356 314 74 37 chr12 45432128 45432399 -98850090 + L2 LINE L2 1471 1751 -1563 291 240 104 52 chr12 45432432 45432528 -98849961 - L2 LINE L2 -1 3312 3212 180 77 0 0 chr12 45432805 45432831 -98849658 + (T)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr12 45433073 45433105 -98849384 + AT_rich Low_complexity Low_complexity 1 32 0 288 150 50 0 chr12 45433291 45433351 -98849138 - L1ME3A LINE L1 -219 5951 5889 257 288 25 56 chr12 45433381 45433541 -98848948 - L1 LINE L1 -1089 5057 4903 233 261 97 52 chr12 45433648 45433782 -98848707 + L1MEd LINE L1 20 159 -5960 261 229 79 57 chr12 45433970 45434110 -98848379 + L1MEd LINE L1 671 813 -5306 2214 74 23 27 chr12 45434647 45434946 -98847543 + AluSp SINE Alu 1 298 -15 1507 63 0 48 chr12 45436171 45436377 -98846112 - AluY SINE Alu -12 299 104 471 319 43 22 chr12 45437796 45437981 -98844508 + MIR SINE MIR 1 189 -73 22 0 0 0 chr12 45438089 45438111 -98844378 + AT_rich Low_complexity Low_complexity 1 22 0 377 309 94 20 chr12 45438162 45438338 -98844151 + MIR SINE MIR 2 189 -73 342 0 0 0 chr12 45439031 45439069 -98843420 + (TG)n Simple_repeat Simple_repeat 2 39 0 267 304 24 102 chr12 45440144 45440476 -98842013 - LTR67 LTR ERVL -34 523 218 24 0 0 0 chr12 45440614 45440638 -98841851 + AT_rich Low_complexity Low_complexity 1 24 0 2750 78 13 0 chr12 45440873 45440894 -98841595 + L1PB1 LINE L1 5764 5783 -404 465 19 0 0 chr12 45440894 45440948 -98841541 + (TA)n Simple_repeat Simple_repeat 1 54 0 2750 78 13 0 chr12 45440948 45441345 -98841144 + L1PB1 LINE L1 5783 6187 0 248 249 12 24 chr12 45441409 45441576 -98840913 + (CATATA)n Simple_repeat Simple_repeat 1 165 0 1679 346 78 17 chr12 45441775 45442696 -98839793 - ERVL LTR ERVL -637 5127 4151 29 28 0 0 chr12 45443268 45443304 -98839185 + AT_rich Low_complexity Low_complexity 1 36 0 195 162 0 0 chr12 45443681 45443718 -98838771 + T-rich Low_complexity Low_complexity 1 37 0 316 194 15 0 chr12 45444158 45444225 -98838264 + MER58 DNA MER1_type 2327 2394 -26 2197 75 0 25 chr12 45444672 45444984 -98837505 - AluY SINE Alu 0 313 9 494 300 49 29 chr12 45444994 45445237 -98837252 - ERVL LTR ERVL -3386 2378 2131 332 204 107 48 chr12 45445493 45445596 -98836893 + MLT1D LTR MaLR 1 109 -396 1304 252 48 44 chr12 45445632 45446045 -98836444 + MLT1D LTR MaLR 91 505 0 1404 207 38 54 chr12 45448515 45448969 -98833520 + MER39 LTR ERV1 260 565 0 36 40 0 0 chr12 45450084 45450134 -98832355 + AT_rich Low_complexity Low_complexity 1 50 0 293 319 58 58 chr12 45450182 45450408 -98832081 - MIR SINE MIR -3 259 34 248 330 19 38 chr12 45451042 45451148 -98831341 + L2 LINE L2 2714 2817 -497 2868 16 0 3 chr12 45452326 45452645 -98829844 + AluYb8 SINE Alu 1 318 0 552 243 160 10 chr12 45454283 45454571 -98827918 + L1MC5 LINE L1 7560 7890 -71 2025 141 0 3 chr12 45454842 45455155 -98827334 - AluSx SINE Alu 0 312 1 688 144 8 8 chr12 45455551 45455676 -98826813 + L1MA3 LINE L1 6175 6299 -6 4331 235 90 19 chr12 45456142 45458426 -98824063 + L1ME1 LINE L1 3609 6066 -100 1891 146 35 35 chr12 45458426 45458795 -98823694 - THE1C LTR MaLR -4 371 3 4331 235 90 19 chr12 45458795 45458899 -98823590 + L1ME1 LINE L1 6066 6161 -5 24 67 0 0 chr12 45459066 45459111 -98823378 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr12 45460352 45460376 -98822113 + AT_rich Low_complexity Low_complexity 1 24 0 2057 89 4 4 chr12 45460898 45461167 -98821322 + AluSx SINE Alu 39 307 -5 1111 169 45 0 chr12 45461385 45461586 -98820903 - MER2 DNA MER2_type -135 210 1 1668 163 51 4 chr12 45462329 45462605 -98819884 + AluJo SINE Alu 4 292 -20 182 283 0 0 chr12 45463924 45463970 -98818519 + L2 LINE L2 1963 2008 -1306 2131 121 7 0 chr12 45464482 45464788 -98817701 - AluSx SINE Alu -4 308 1 197 196 18 0 chr12 45464841 45464897 -98817592 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 307 141 0 174 chr12 45464948 45465040 -98817449 - MADE1 DNA Mariner -4 76 1 * 457 242 55 0 chr12 45465040 45465163 -98817326 + MER112 DNA MER1_type 125 254 -6 503 296 24 6 chr12 45465286 45465455 -98817034 + MIR SINE MIR 66 237 -25 402 214 53 30 chr12 45466167 45466298 -98816191 - MER74A LTR ERVL 0 558 425 7932 100 19 36 chr12 45466298 45467862 -98814627 + L1PA8 LINE L1 4097 5621 -510 1833 90 4 4 chr12 45467862 45468118 -98814371 + L1PA8 LINE L1 5909 6164 -8 1955 194 26 53 chr12 45468139 45468608 -98813881 - MER74A LTR ERVL -102 456 1 588 238 27 70 chr12 45468696 45468881 -98813608 - MER5B DNA MER1_type -1 177 1 253 242 16 16 chr12 45468893 45468955 -98813534 - MIR SINE MIR -135 127 66 644 285 81 56 chr12 45469281 45469691 -98812798 + MLT1K LTR MaLR 169 588 0 256 298 66 41 chr12 45469939 45470060 -98812429 - L2 LINE L2 -10 3262 3139 2392 69 3 0 chr12 45470536 45470826 -98811663 + AluSg SINE Alu 1 291 -19 226 326 0 65 chr12 45470853 45470945 -98811544 - L2 LINE L2 -194 3078 2993 427 278 62 0 chr12 45471104 45471248 -98811241 + Charlie1 DNA MER1_type 1 153 -2608 560 149 18 9 chr12 45471252 45471366 -98811123 + Charlie1 DNA MER1_type 2080 2194 -567 1617 132 34 73 chr12 45471390 45471676 -98810813 - MER1B DNA MER1_type -2373 339 113 2062 116 3 0 chr12 45471676 45471960 -98810529 + AluSq SINE Alu 10 294 -19 1617 132 34 73 chr12 45471960 45472069 -98810420 - MER1B DNA MER1_type -2599 113 1 1923 174 141 2 chr12 45472070 45472547 -98809942 + Charlie1 DNA MER1_type 2213 2755 -6 424 270 131 22 chr12 45475382 45475519 -98806970 - MIR SINE MIR -79 183 32 267 293 12 12 chr12 45475880 45475962 -98806527 - L2 LINE L2 0 3313 3232 862 126 0 8 chr12 45477758 45477885 -98804604 + AluJo SINE Alu 1 126 -176 935 186 0 6 chr12 45477940 45478096 -98804393 + AluJo SINE Alu 135 289 -23 200 261 115 31 chr12 45478120 45478250 -98804239 - MIR SINE MIR -50 212 72 2175 105 0 0 chr12 45478371 45478657 -98803832 + AluSc SINE Alu 14 299 -10 255 103 0 0 chr12 45480051 45480090 -98802399 + (TG)n Simple_repeat Simple_repeat 1 39 0 182 387 21 11 chr12 45481604 45481697 -98800792 - MIR SINE MIR -20 242 149 455 387 16 5 chr12 45481731 45481922 -98800567 - L2 LINE L2 0 3272 3080 543 213 101 37 chr12 45482221 45482409 -98800080 + MER3 DNA MER1_type 10 209 0 238 222 37 49 chr12 45482409 45482438 -98800051 - MER3 DNA MER1_type -164 45 18 204 211 0 0 chr12 45482790 45482828 -98799661 + (CA)n Simple_repeat Simple_repeat 1 38 0 595 76 0 0 chr12 45483201 45483280 -98799209 + MADE1 DNA Mariner 2 80 0 506 104 13 0 chr12 45483700 45483777 -98798712 - MADE1 DNA Mariner 0 80 3 239 252 70 78 chr12 45483869 45483984 -98798505 - MIR SINE MIR -112 150 37 455 328 50 42 chr12 45484218 45484578 -98797911 - L2 LINE L2 -4 3309 2947 362 258 39 23 chr12 45484598 45484726 -98797763 - L2 LINE L2 -835 2479 2350 21 57 0 0 chr12 45484875 45484910 -98797579 + AT_rich Low_complexity Low_complexity 1 35 0 214 281 18 35 chr12 45487434 45487491 -98794998 + L2 LINE L2 3149 3204 -68 2096 169 0 6 chr12 45488366 45488430 -98794059 + MER7A DNA MER2_type 2 65 -2973 3893 110 29 2 chr12 45488430 45489021 -98793468 + L1PA13 LINE L1 5551 6157 -6 2096 169 0 6 chr12 45489021 45489304 -98793185 + MER7A DNA MER2_type 65 345 -1 2322 84 0 0 chr12 45489388 45489706 -98792783 - AluSx SINE Alu 0 318 1 660 299 99 0 chr12 45490192 45490413 -98792076 - MIR SINE MIR -19 243 1 328 321 47 51 chr12 45490475 45490690 -98791799 + MIR SINE MIR 43 256 -6 840 275 8 46 chr12 45490794 45491034 -98791455 - MIR SINE MIR -21 241 11 1599 193 6 29 chr12 45491306 45491622 -98790867 + AluJo SINE Alu 1 309 -3 466 177 26 9 chr12 45491624 45491737 -98790752 + GA-rich Low_complexity Low_complexity 4 118 0 2552 96 16 14 chr12 45492809 45493172 -98789317 + THE1B LTR MaLR 1 364 0 252 211 35 0 chr12 45493249 45493306 -98789183 + MIR SINE MIR 11 69 -193 260 219 55 41 chr12 45493336 45493409 -98789080 + MIR SINE MIR 163 236 -26 319 296 49 21 chr12 45493417 45493559 -98788930 + MIR SINE MIR 61 206 -56 714 282 87 10 chr12 45493630 45493954 -98788535 + MER57B LTR ERV1 1 321 -82 1018 238 114 22 chr12 45494377 45494692 -98787797 - MER2 DNA MER2_type -1 344 1 2638 85 3 35 chr12 45495138 45495290 -98787199 - THE1B LTR MaLR 0 364 209 2297 81 0 10 chr12 45495290 45495586 -98786903 + AluY SINE Alu 1 293 -18 2638 85 3 35 chr12 45495586 45495809 -98786680 - THE1B LTR MaLR -155 209 1 837 269 125 31 chr12 45495845 45496433 -98786056 + L2 LINE L2 2660 3313 0 1830 154 0 10 chr12 45496455 45496782 -98785707 + AluJb SINE Alu 23 529 -40 933 110 6 28 chr12 45496782 45496964 -98785525 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1830 154 0 10 chr12 45496964 45497005 -98785484 + AluJb SINE Alu 529 569 0 197 62 0 31 chr12 45497041 45497073 -98785416 + (GGGGA)n Simple_repeat Simple_repeat 2 32 0 1678 177 100 21 chr12 45499257 45499738 -98782751 + Charlie1b DNA MER1_type 1 519 -4 316 313 60 18 chr12 45499948 45500114 -98782375 + MER5A DNA MER1_type 5 177 -12 754 276 36 18 chr12 45500610 45500835 -98781654 + MIR SINE MIR 34 262 0 231 61 0 0 chr12 45502252 45502285 -98780204 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 338 200 50 0 chr12 45502679 45502759 -98779730 + MER58 DNA MER1_type 131 2419 -1 333 160 93 27 chr12 45502827 45502902 -98779587 - MER5A DNA MER1_type -83 106 27 251 372 34 34 chr12 45503044 45503278 -98779211 + MIR SINE MIR 20 253 -9 3319 314 49 37 chr12 45504179 45505740 -98776749 - HERV16 LTR ERVL -1900 3096 1725 916 305 39 36 chr12 45505888 45506245 -98776244 - HERV16 LTR ERVL -4095 901 544 4196 116 13 2 chr12 45506549 45507177 -98775312 + MER41B LTR ERV1 1 635 0 202 300 71 0 chr12 45508344 45508414 -98774075 + L2 LINE L2 3183 3257 -56 1750 195 0 3 chr12 45508472 45508780 -98773709 - AluJo SINE Alu -5 307 1 2603 122 3 8 chr12 45508833 45509210 -98773279 - THE1C LTR MaLR 0 375 1 10392 123 10 29 chr12 45509210 45510821 -98771668 - THE1C-int LTR MaLR 0 1580 1 2319 114 50 8 chr12 45510821 45511181 -98771308 - THE1C LTR MaLR 0 375 1 244 120 54 54 chr12 45511879 45511971 -98770518 + (TA)n Simple_repeat Simple_repeat 1 92 0 649 274 61 80 chr12 45511981 45512393 -98770096 - LTR67 LTR ERVL -141 416 13 206 283 152 20 chr12 45512644 45512743 -98769746 + L2 LINE L2 3154 3265 -7 357 347 42 21 chr12 45512828 45513021 -98769468 + MER117 DNA MER1_type 1 197 0 458 255 182 26 chr12 45513813 45514005 -98768484 - MIR SINE MIR 0 262 41 240 307 20 81 chr12 45514104 45514268 -98768221 - MIR SINE MIR -67 141 42 291 333 48 0 chr12 45514476 45514581 -98767908 - MIR3 SINE MIR -13 195 86 189 74 0 0 chr12 45515467 45515494 -98766995 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 865 196 0 0 chr12 45515501 45515644 -98766845 - FRAM SINE Alu -37 139 1 266 241 60 0 chr12 45515712 45515795 -98766694 + L1MEc LINE L1 1989 2076 -4320 325 212 35 24 chr12 45515858 45515943 -98766546 + L1MEc LINE L1 2626 2711 -3504 264 341 122 8 chr12 45515950 45516196 -98766293 - L2 LINE L2 -1577 1737 1464 190 365 45 51 chr12 45516395 45516573 -98765916 - L2 LINE L2 -1850 1464 1288 324 265 109 55 chr12 45516698 45516936 -98765553 + L1ME LINE L1 5347 5597 -558 2220 114 0 3 chr12 45517252 45517551 -98764938 + AluSq SINE Alu 3 300 -13 22 56 0 0 chr12 45518375 45518411 -98764078 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr12 45520719 45520770 -98761719 + AT_rich Low_complexity Low_complexity 1 51 0 319 188 159 0 chr12 45522590 45522659 -98759830 + L2 LINE L2 3234 3313 0 2643 24 3 0 chr12 45523535 45523833 -98758656 + AluY SINE Alu 4 302 -9 1567 248 90 46 chr12 45524408 45525142 -98757347 + L1M4 LINE L1 4571 5353 -793 2260 109 0 0 chr12 45525142 45525445 -98757044 + AluSx SINE Alu 1 303 -9 1567 248 90 46 chr12 45525445 45525478 -98757011 + L1M4 LINE L1 5353 5383 -763 299 294 91 23 chr12 45525478 45525828 -98756661 + L1M4 LINE L1 2315 2688 -3458 28 0 0 0 chr12 45526808 45526836 -98755653 + AT_rich Low_complexity Low_complexity 1 28 0 775 190 38 13 chr12 45527512 45527670 -98754819 + L1M4b LINE L1 10 171 -6688 1222 150 14 12 chr12 45527700 45527722 -98754767 + MLT1D LTR MaLR 259 279 -226 662 75 0 0 chr12 45527722 45527816 -98754673 + L1PA4 LINE L1 6062 6155 0 1222 150 14 12 chr12 45527816 45528004 -98754485 + MLT1D LTR MaLR 279 448 -57 5541 241 42 59 chr12 45528018 45530385 -98752104 + L1M4b LINE L1 159 2469 -4490 789 271 99 33 chr12 45530503 45531367 -98751122 + L1M4b LINE L1 2477 3353 -3604 1972 94 41 38 chr12 45531501 45531593 -98750896 - L1P4 LINE L1 -553 5612 5522 2050 131 3 0 chr12 45531593 45531890 -98750599 + AluSx SINE Alu 1 298 -14 1972 94 41 38 chr12 45531890 45532115 -98750374 - L1P4 LINE L1 -643 5522 5294 192 313 16 0 chr12 45532546 45532610 -98749879 - L2 LINE L2 -4 3309 3245 665 275 66 24 chr12 45532658 45532869 -98749620 - MIR SINE MIR -34 228 9 1300 226 53 60 chr12 45533540 45533960 -98748529 + MER31B LTR ERV1 1 419 -47 3914 121 53 2 chr12 45533960 45534581 -98747908 + MER39B LTR ERV1 1 653 0 1300 226 53 60 chr12 45534581 45534629 -98747860 + MER31B LTR ERV1 419 466 0 622 131 0 10 chr12 45534845 45534944 -98747545 + MER4A LTR ERV1 1 98 -566 * 1568 139 163 92 chr12 45534940 45535272 -98747217 + MER4A LTR ERV1 257 621 -43 2199 108 0 22 chr12 45535272 45535588 -98746901 + AluSx SINE Alu 3 311 -1 1568 139 163 92 chr12 45535588 45535636 -98746853 + MER4A LTR ERV1 621 664 0 29 98 0 0 chr12 45536777 45536869 -98745620 + AT_rich Low_complexity Low_complexity 1 92 0 2303 208 43 12 chr12 45537057 45537567 -98744922 + MER90 LTR ERV1 89 614 0 573 161 77 39 chr12 45537717 45537847 -98744642 - AluJb SINE Alu -1 311 177 27 29 0 0 chr12 45538487 45538521 -98743968 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr12 45540867 45540888 -98741601 + AT_rich Low_complexity Low_complexity 1 21 0 460 101 25 38 chr12 45542001 45542080 -98740409 + MADE1 DNA Mariner 1 78 -2 2353 82 3 0 chr12 45542103 45542406 -98740083 + AluSp SINE Alu 1 304 -9 274 315 87 0 chr12 45542875 45542967 -98739522 - MIR SINE MIR -117 145 46 875 184 27 16 chr12 45542987 45543172 -98739317 + MER53 DNA DNA 3 189 0 282 300 169 19 chr12 45543344 45543504 -98738985 - MER5A DNA MER1_type -5 184 1 642 181 60 0 chr12 45544114 45544230 -98738259 - FLAM_A SINE Alu -10 123 1 2503 119 0 14 chr12 45544644 45545013 -98737476 - THE1B LTR MaLR 0 364 1 243 79 0 0 chr12 45545093 45545131 -98737358 + (TC)n Simple_repeat Simple_repeat 2 39 0 213 39 0 0 chr12 45545131 45545157 -98737332 + (CA)n Simple_repeat Simple_repeat 1 26 0 519 232 92 19 chr12 45545423 45545630 -98736859 - L1M4 LINE L1 -1470 4676 4455 * 2019 262 48 57 chr12 45545602 45546486 -98736003 - L1ME LINE L1 -5175 895 20 22 0 0 0 chr12 45547423 45547445 -98735044 + AT_rich Low_complexity Low_complexity 1 22 0 2320 176 29 5 chr12 45547580 45547994 -98734495 + MSTB LTR MaLR 1 424 -2 321 323 21 0 chr12 45548313 45548409 -98734080 - MIR SINE MIR -150 112 15 386 192 14 0 chr12 45548603 45548676 -98733813 - MER116 DNA Mariner -6 74 1 6169 97 11 2 chr12 45550119 45551772 -98730717 - L1PA13 LINE L1 -19 6795 5131 252 0 0 0 chr12 45551773 45551801 -98730688 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 944 70 0 0 chr12 45551801 45551915 -98730574 - AluY SINE Alu -31 280 167 5297 160 49 7 chr12 45551925 45552880 -98729609 - L1PA13 LINE L1 -1668 5129 4135 4430 205 45 1 chr12 45552884 45553684 -98728805 - L1PA13 LINE L1 -5952 835 1 791 202 0 28 chr12 45554668 45554858 -98727631 - L1P LINE L1 -2463 3683 3499 290 370 101 34 chr12 45554970 45555445 -98727044 + L2 LINE L2 2456 2962 -352 282 303 61 10 chr12 45556817 45556916 -98725573 + MIR SINE MIR 3 106 -156 403 265 11 0 chr12 45556954 45557061 -98725428 + L1ME2 LINE L1 6051 6162 -4 201 355 0 0 chr12 45557087 45557163 -98725326 + MIR SINE MIR 129 204 -58 836 181 7 0 chr12 45557334 45557483 -98725006 + FRAM SINE Alu 1 150 -16 2203 107 0 3 chr12 45557498 45557798 -98724691 + AluSx SINE Alu 1 299 -13 1499 176 98 17 chr12 45557840 45558136 -98724353 + MER2 DNA MER2_type 1 320 -25 1537 253 106 2 chr12 45558505 45559079 -98723410 + L1M4 LINE L1 2464 3097 -3049 * 2980 233 65 33 chr12 45559076 45560033 -98722456 + L1M4 LINE L1 3332 4318 -1828 511 306 221 42 chr12 45560087 45560864 -98721625 - L3 LINE CR1 -178 1399 484 31 26 0 0 chr12 45561644 45561682 -98720807 + AT_rich Low_complexity Low_complexity 1 38 0 188 320 97 0 chr12 45562161 45562264 -98720225 - L3 LINE CR1 -18 1559 1447 619 276 39 25 chr12 45562418 45562621 -98719868 - MER63A DNA MER1_type -3 207 2 627 353 142 23 chr12 45562716 45563411 -98719078 + L2 LINE L2 2189 2966 -348 1144 284 60 12 chr12 45563502 45563995 -98718494 - L2 LINE L2 -5 3308 2785 3546 286 93 17 chr12 45564025 45565376 -98717113 - L2 LINE L2 -783 2531 1078 1466 96 55 9 chr12 45565581 45565801 -98716688 + MER30 DNA MER1_type 1 230 0 2760 13 0 0 chr12 45565846 45566154 -98716335 - AluYa5 SINE Alu -3 308 1 341 258 211 0 chr12 45566219 45566363 -98716126 - MIR SINE MIR -29 179 2 22 0 0 0 chr12 45566443 45566465 -98716024 + AT_rich Low_complexity Low_complexity 1 22 0 216 328 60 0 chr12 45566495 45566562 -98715927 - L2 LINE L2 -30 3242 3172 2362 94 0 3 chr12 45567064 45567372 -98715117 + AluSq SINE Alu 1 307 -6 279 319 26 35 chr12 45569249 45569362 -98713127 - L2 LINE L2 -1 3312 3201 21 0 0 0 chr12 45569383 45569404 -98713085 + AT_rich Low_complexity Low_complexity 1 21 0 283 304 146 32 chr12 45569806 45569964 -98712525 - MIR SINE MIR -54 208 33 222 37 0 0 chr12 45569968 45569995 -98712494 + (TG)n Simple_repeat Simple_repeat 2 28 0 4238 224 30 39 chr12 45570243 45571987 -98710502 + L1ME1 LINE L1 1 1362 -5463 * 5485 231 94 7 chr12 45571964 45573623 -98708866 + L1MB7 LINE L1 3947 5750 -894 1122 227 8 0 chr12 45573725 45573976 -98708513 + AluJo SINE Alu 54 306 -6 3859 187 17 22 chr12 45573977 45574783 -98707706 + L1MB7 LINE L1 5820 6621 -61 29 60 0 0 chr12 45574823 45574873 -98707616 + AT_rich Low_complexity Low_complexity 1 50 0 856 247 76 59 chr12 45574932 45575435 -98707054 + L1ME1 LINE L1 1423 6659 -5 6546 63 17 7 chr12 45576632 45577982 -98704507 - L1PA7 LINE L1 -2 6467 5110 2707 109 2 0 chr12 45577982 45578403 -98704086 - L1PA7 LINE L1 -2650 3811 3390 * 12005 110 10 29 chr12 45578394 45580652 -98701837 - L1PA7 LINE L1 -4233 2228 10 269 238 162 48 chr12 45580806 45580911 -98701578 - MIR SINE MIR -72 190 74 1270 185 13 1 chr12 45580912 45581228 -98701261 - MLT1A1 LTR MaLR 0 365 5 3386 213 31 131 chr12 45581232 45582446 -98700043 - MLT1A1-int LTR MaLR 0 1735 643 3181 178 48 31 chr12 45582498 45583145 -98699344 - MLT1A1-int LTR MaLR -1076 659 2 1971 164 3 37 chr12 45583150 45583528 -98698961 - MLT1A1 LTR MaLR 0 365 1 470 318 107 75 chr12 45584815 45585281 -98697208 + L2 LINE L2 1893 2373 -941 25 0 0 0 chr12 45585760 45585785 -98696704 + AT_rich Low_complexity Low_complexity 1 25 0 256 375 61 20 chr12 45585928 45586173 -98696316 - L3 LINE CR1 -9 1568 1314 254 234 0 0 chr12 45586220 45586267 -98696222 + MLT1L LTR MaLR 341 387 -228 262 369 175 0 chr12 45586463 45586669 -98695820 - L3 LINE CR1 -424 1153 912 284 276 112 22 chr12 45586928 45587062 -98695427 + MIR SINE MIR 7 152 -110 198 0 0 0 chr12 45587851 45587873 -98694616 + (T)n Simple_repeat Simple_repeat 1 22 0 257 377 8 16 chr12 45587881 45588003 -98694486 + HERV16 LTR ERVL 1174 1294 -3702 231 306 143 25 chr12 45589614 45589810 -98692679 - L2 LINE L2 -687 2627 2409 744 157 0 0 chr12 45590901 45591016 -98691473 + FLAM_C SINE Alu 1 115 -28 27 49 0 0 chr12 45591187 45591228 -98691261 + AT_rich Low_complexity Low_complexity 1 41 0 228 250 0 0 chr12 45591626 45591678 -98690811 - L2 LINE L2 -4 3309 3258 556 308 96 29 chr12 45592067 45592307 -98690182 + MIR SINE MIR 1 256 -6 30 77 0 0 chr12 45593847 45593912 -98688577 + AT_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr12 45594439 45594468 -98688021 + AT_rich Low_complexity Low_complexity 1 29 0 369 0 0 0 chr12 45596351 45596392 -98686097 + (CA)n Simple_repeat Simple_repeat 2 42 0 1317 164 7 87 chr12 45597284 45597582 -98684907 + AluJo SINE Alu 1 274 -38 405 0 0 0 chr12 45597590 45597635 -98684854 + (TAA)n Simple_repeat Simple_repeat 1 45 0 28 29 0 0 chr12 45598528 45598563 -98683926 + AT_rich Low_complexity Low_complexity 1 35 0 34 42 0 0 chr12 45599481 45599529 -98682960 + AT_rich Low_complexity Low_complexity 1 48 0 29 60 0 0 chr12 45599634 45599684 -98682805 + AT_rich Low_complexity Low_complexity 1 50 0 337 272 19 19 chr12 45601062 45601165 -98681324 + MIR SINE MIR 128 230 -32 308 298 79 48 chr12 45601288 45601493 -98680996 + HAL1 LINE L1 985 1205 -1302 2777 16 0 0 chr12 45601493 45601802 -98680687 + AluYa5 SINE Alu 1 309 -2 308 298 79 48 chr12 45601802 45601911 -98680578 + HAL1 LINE L1 1205 1309 -1198 2114 214 45 6 chr12 45602412 45602898 -98679591 + MLT1D LTR MaLR 1 505 0 21 36 0 0 chr12 45602901 45602929 -98679560 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 45603188 45603212 -98679277 + AT_rich Low_complexity Low_complexity 1 24 0 1031 79 0 0 chr12 45603688 45603827 -98678662 - L1PA10 LINE L1 -2 6166 6028 22 0 0 0 chr12 45604491 45604513 -98677976 + AT_rich Low_complexity Low_complexity 1 22 0 2170 124 0 0 chr12 45605391 45605689 -98676800 + AluSx SINE Alu 1 298 -14 1147 285 154 51 chr12 45607060 45607238 -98675251 + HAL1 LINE L1 1012 1170 -1337 2546 55 0 0 chr12 45607238 45607548 -98674941 + AluYa5 SINE Alu 1 310 -1 1147 285 154 51 chr12 45607548 45608629 -98673860 + HAL1 LINE L1 1170 2401 -106 295 248 178 0 chr12 45608642 45608743 -98673746 + L3 LINE CR1 1212 1330 -247 2233 98 0 0 chr12 45609269 45609585 -98672904 - AluSq SINE Alu 0 316 1 21 0 0 0 chr12 45609671 45609692 -98672797 + AT_rich Low_complexity Low_complexity 1 21 0 2180 108 7 0 chr12 45610720 45611026 -98671463 - AluY SINE Alu -3 308 1 189 388 30 0 chr12 45611926 45611993 -98670496 + L2 LINE L2 3203 3271 -1 1771 235 106 80 chr12 45612361 45613269 -98669220 + L1ME3A LINE L1 5231 6161 -9 434 283 151 14 chr12 45613439 45613658 -98668831 - MIR SINE MIR 0 262 14 2532 24 10 7 chr12 45614442 45614739 -98667750 - AluY SINE Alu -13 298 1 412 358 122 19 chr12 45614752 45615073 -98667416 + L2 LINE L2 2916 3269 -3 1254 245 156 58 chr12 45615960 45616235 -98666254 + Charlie7 DNA MER1_type 1544 1791 -821 2257 87 0 3 chr12 45616235 45616524 -98665965 - AluSc SINE Alu -19 290 3 1254 245 156 58 chr12 45616524 45617208 -98665281 + Charlie7 DNA MER1_type 1791 2597 -15 264 30 0 0 chr12 45617643 45617676 -98664813 + (CA)n Simple_repeat Simple_repeat 2 34 0 30 0 0 0 chr12 45618339 45618369 -98664120 + AT_rich Low_complexity Low_complexity 1 30 0 249 108 0 0 chr12 45618676 45618713 -98663776 + (TTC)n Simple_repeat Simple_repeat 3 39 0 2344 97 0 3 chr12 45618715 45619026 -98663463 - AluSx SINE Alu -2 310 1 23 0 0 0 chr12 45620124 45620147 -98662342 + AT_rich Low_complexity Low_complexity 1 23 0 1179 226 9 0 chr12 45621049 45621270 -98661219 - MER58A DNA MER1_type 0 224 2 323 301 150 18 chr12 45621639 45621752 -98660737 + L2 LINE L2 3141 3268 -4 21 36 0 0 chr12 45622621 45622649 -98659840 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr12 45622730 45622768 -98659721 + AT_rich Low_complexity Low_complexity 1 38 0 194 91 30 0 chr12 45622911 45622944 -98659545 + A-rich Low_complexity Low_complexity 2 35 0 2537 114 8 13 chr12 45622966 45623359 -98659130 + L1PA11 LINE L1 5784 6174 0 201 295 16 16 chr12 45624500 45624561 -98657928 + L2 LINE L2 3194 3254 -18 1677 137 0 4 chr12 45624856 45625111 -98657378 + AluJb SINE Alu 50 303 -9 31 26 0 0 chr12 45626483 45626521 -98655968 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr12 45626822 45626850 -98655639 + AT_rich Low_complexity Low_complexity 1 28 0 423 295 25 0 chr12 45627251 45627373 -98655116 - MIR SINE MIR -73 189 65 1348 162 90 59 chr12 45629782 45630072 -98652417 - AluJb SINE Alu -13 299 1 480 62 0 0 chr12 45631594 45631658 -98650831 + (CA)n Simple_repeat Simple_repeat 1 64 0 2068 138 33 31 chr12 45632882 45633274 -98649215 + L1MC2 LINE L1 5937 6329 -15 2372 83 3 6 chr12 45633274 45633586 -98648903 + AluY SINE Alu 1 311 0 356 294 65 0 chr12 45633618 45633748 -98648741 + MLT1I LTR MaLR 278 387 -22 211 296 41 20 chr12 45633795 45633893 -98648596 - L2 LINE L2 -534 2780 2681 601 314 34 37 chr12 45633922 45634272 -98648217 + HAL1 LINE L1 39 387 -2120 1133 175 154 0 chr12 45634282 45634570 -98647919 - MER33 DNA MER1_type 0 324 1 1107 279 42 76 chr12 45634574 45635166 -98647323 + HAL1 LINE L1 483 1054 -1453 1549 269 111 25 chr12 45635218 45636020 -98646469 + HAL1 LINE L1 1237 2107 -400 2255 97 3 16 chr12 45638054 45638362 -98644127 - AluSx SINE Alu -8 304 1 2057 60 0 4 chr12 45638737 45639003 -98643486 + AluY SINE Alu 41 305 -6 187 158 18 18 chr12 45639195 45639252 -98643237 + (TA)n Simple_repeat Simple_repeat 1 57 0 235 331 118 8 chr12 45639367 45639494 -98642995 + MIR SINE MIR 49 189 -73 2348 96 0 0 chr12 45640169 45640471 -98642018 - AluSq SINE Alu -11 302 1 918 169 19 0 chr12 45640711 45640871 -98641618 - L1MB5 LINE L1 -8 6166 6004 22 35 0 0 chr12 45641328 45641357 -98641132 + AT_rich Low_complexity Low_complexity 1 29 0 1242 225 56 0 chr12 45643476 45643591 -98638898 + AluJo SINE Alu 1 108 -197 207 0 0 0 chr12 45643591 45643614 -98638875 + (CA)n Simple_repeat Simple_repeat 2 24 0 1242 225 56 0 chr12 45643614 45643788 -98638701 + AluJo SINE Alu 108 305 0 21 0 0 0 chr12 45644345 45644366 -98638123 + AT_rich Low_complexity Low_complexity 1 21 0 10801 182 7 0 chr12 45644661 45647566 -98634923 + L1PA13 LINE L1 3245 6161 -2 401 317 102 12 chr12 45647724 45647891 -98634598 + MER5A DNA MER1_type 7 188 -1 186 43 0 0 chr12 45648091 45648114 -98634375 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr12 45648623 45648646 -98633843 + AT_rich Low_complexity Low_complexity 1 23 0 731 161 19 12 chr12 45648648 45648809 -98633680 - L1MA8 LINE L1 0 6291 6130 2221 129 29 0 chr12 45648809 45649158 -98633331 + L1MA6 LINE L1 5601 5959 -341 316 349 58 67 chr12 45649428 45649758 -98632731 + L2 LINE L2 2939 3265 -7 25 51 0 0 chr12 45651613 45651652 -98630837 + AT_rich Low_complexity Low_complexity 1 39 0 750 303 66 19 chr12 45652268 45652631 -98629858 + L2 LINE L2 1256 1635 -1679 935 220 54 48 chr12 45652639 45652800 -98629689 + MER5C DNA MER1_type 5 163 -161 3228 148 32 25 chr12 45652800 45653167 -98629322 - L1MB2 LINE L1 -2 6169 5806 1107 232 15 93 chr12 45653167 45653563 -98628926 - MLT1A1 LTR MaLR 0 365 1 3228 148 32 25 chr12 45653563 45653625 -98628864 - L1MB2 LINE L1 -365 5806 5746 1674 111 0 0 chr12 45653625 45653851 -98628638 - AluSg/x SINE Alu -15 295 70 3228 148 32 25 chr12 45653851 45654020 -98628469 - L1MB2 LINE L1 -425 5746 5566 935 220 54 48 chr12 45654020 45654171 -98628318 + MER5C DNA MER1_type 163 319 -5 457 234 141 70 chr12 45654215 45654442 -98628047 + L2 LINE L2 1648 1890 -1424 2700 151 78 21 chr12 45654463 45654979 -98627510 - LTR10A LTR ERV1 -64 545 1 1761 258 88 74 chr12 45654991 45655855 -98626634 + L2 LINE L2 1921 2796 -518 1680 145 8 67 chr12 45655856 45656222 -98626267 - MER4A LTR ERV1 0 664 262 235 153 375 14 chr12 45656222 45656294 -98626195 - MER4A LTR ERV1 -566 98 1 1117 247 49 88 chr12 45656294 45656707 -98625782 + L2 LINE L2 2794 3194 -119 6167 73 0 0 chr12 45656707 45657487 -98625002 + LTR17 LTR ERV1 1 780 0 1117 247 49 88 chr12 45657487 45657602 -98624887 + L2 LINE L2 3194 3312 -1 22 35 0 0 chr12 45658048 45658077 -98624412 + AT_rich Low_complexity Low_complexity 1 29 0 2954 230 43 43 chr12 45658214 45658878 -98623611 + L1ME2 LINE L1 5356 6019 -145 225 0 0 0 chr12 45658878 45658903 -98623586 + (TA)n Simple_repeat Simple_repeat 2 26 0 2145 113 13 0 chr12 45658903 45659204 -98623285 - AluSq SINE Alu -8 305 1 2954 230 43 43 chr12 45659204 45659347 -98623142 + L1ME2 LINE L1 6017 6164 0 21 89 0 0 chr12 45662186 45662242 -98620247 + AT_rich Low_complexity Low_complexity 1 56 0 295 286 66 0 chr12 45662265 45662356 -98620133 + MIR SINE MIR 160 256 -6 180 0 0 0 chr12 45663078 45663098 -98619391 + (CAA)n Simple_repeat Simple_repeat 2 21 0 308 274 110 68 chr12 45663153 45663299 -98619190 + MIR SINE MIR 3 154 -108 21 0 0 0 chr12 45664341 45664362 -98618127 + AT_rich Low_complexity Low_complexity 1 21 0 192 152 0 0 chr12 45664371 45664404 -98618085 + (TA)n Simple_repeat Simple_repeat 1 33 0 31 0 0 0 chr12 45666869 45666900 -98615589 + AT_rich Low_complexity Low_complexity 1 31 0 182 213 238 88 chr12 45668782 45668862 -98613627 + MIR SINE MIR 79 170 -92 42658 32 21 2 chr12 45668886 45674921 -98607568 + L1PA2 LINE L1 2 6155 0 21 0 0 0 chr12 45674961 45674982 -98607507 + AT_rich Low_complexity Low_complexity 1 21 0 260 91 23 0 chr12 45675540 45675584 -98606905 + (TC)n Simple_repeat Simple_repeat 1 45 0 325 286 92 63 chr12 45675895 45676663 -98605826 + L1MEd LINE L1 680 1571 -919 685 305 35 39 chr12 45676722 45677007 -98605482 + MER21B LTR ERV1 508 791 -72 604 296 86 31 chr12 45677218 45677762 -98604727 + L1MEd LINE L1 2573 3146 -2983 316 269 102 32 chr12 45677833 45678019 -98604470 + L1MEd LINE L1 3242 3440 -2689 289 299 7 15 chr12 45678089 45678226 -98604263 + L1MEd LINE L1 3601 3736 -2393 1136 137 40 1 chr12 45678262 45678463 -98604026 - L1MA7 LINE L1 -410 5741 5528 2824 130 40 38 chr12 45678463 45679012 -98603477 + L1MA7 LINE L1 5737 6289 -2 346 253 148 20 chr12 45679030 45679049 -98603440 + L1MEd LINE L1 3834 3849 -2280 905 62 77 8 chr12 45679049 45679179 -98603310 + MER85 DNA T2_type 1 139 0 346 253 148 20 chr12 45679179 45679361 -98603128 + L1MEd LINE L1 3849 4061 -2068 376 319 70 26 chr12 45679364 45679593 -98602896 + L1MEd LINE L1 4090 4328 -1801 3629 277 57 30 chr12 45679657 45681388 -98601101 + L1PBa LINE L1 3 1644 -5219 * 4346 167 39 21 chr12 45681387 45682852 -98599637 + L1PB3 LINE L1 229 1720 -4484 * 8797 159 14 20 chr12 45682839 45685501 -98596988 + L1PB3 LINE L1 3569 6211 0 21 0 0 0 chr12 45685501 45685522 -98596967 + AT_rich Low_complexity Low_complexity 1 21 0 336 302 53 6 chr12 45685613 45685782 -98596707 + L1MEd LINE L1 4600 4776 -1353 508 288 106 24 chr12 45686989 45687654 -98594835 + L1MEd LINE L1 4925 5637 -508 2253 150 3 0 chr12 45688978 45689325 -98593164 + MER7A DNA MER2_type 1 346 0 2684 32 0 0 chr12 45690011 45690320 -98592169 + AluY SINE Alu 1 309 -2 444 262 75 0 chr12 45691278 45691385 -98591104 + MER5B DNA MER1_type 27 141 -37 396 290 186 0 chr12 45691418 45691563 -98590926 + MER5A DNA MER1_type 18 189 0 243 371 95 0 chr12 45692132 45692248 -98590241 - L2 LINE L2 -2 3311 3185 206 274 85 19 chr12 45693277 45693383 -98589106 + MIR SINE MIR 150 262 0 291 397 66 0 chr12 45693545 45693666 -98588823 - L2 LINE L2 -19 3253 3125 845 284 23 5 chr12 45694084 45694302 -98588187 - MIR SINE MIR -10 252 31 257 263 59 85 chr12 45694446 45694564 -98587925 + MIR SINE MIR 18 132 -76 201 74 0 0 chr12 45694745 45694772 -98587717 + (CA)n Simple_repeat Simple_repeat 2 28 0 584 218 18 0 chr12 45696673 45696783 -98585706 + MER81 DNA DNA 2 113 -1 2161 92 0 51 chr12 45697399 45697715 -98584774 - AluSc SINE Alu -9 300 1 2152 129 0 0 chr12 45697931 45698241 -98584248 - AluSx SINE Alu -2 310 1 248 262 0 16 chr12 45698653 45698714 -98583775 - L2 LINE L2 0 3313 3254 2283 104 0 3 chr12 45698965 45699272 -98583217 - AluSq SINE Alu -7 306 1 260 274 0 0 chr12 45699296 45699358 -98583131 + MER94 DNA DNA 48 109 -25 189 0 0 0 chr12 45699374 45699395 -98583094 + (CG)n Simple_repeat Simple_repeat 2 22 0 * 198 0 0 0 chr12 45699394 45699416 -98583073 + (CA)n Simple_repeat Simple_repeat 1 22 0 200 286 18 0 chr12 45701095 45701151 -98581338 + CT-rich Low_complexity Low_complexity 4 60 0 29 78 0 0 chr12 45701296 45701360 -98581129 + AT_rich Low_complexity Low_complexity 1 64 0 32 0 0 0 chr12 45701427 45701459 -98581030 + AT_rich Low_complexity Low_complexity 1 32 0 5137 137 16 7 chr12 45701470 45702313 -98580176 - L1PA15 LINE L1 0 6165 5315 250 287 0 23 chr12 45702623 45702710 -98579779 - L2 LINE L2 -101 3212 3128 714 203 63 0 chr12 45702795 45702938 -98579551 + L1ME LINE L1 5555 5706 -458 * 3052 187 18 22 chr12 45702920 45703890 -98578599 + L1MB2 LINE L1 4771 5826 -345 799 211 20 0 chr12 45703895 45704073 -98578416 + FRAM SINE Alu 1 50 0 1617 157 42 53 chr12 45704073 45704394 -98578095 + L1MB2 LINE L1 5818 6136 -35 2135 91 24 14 chr12 45704394 45704690 -98577799 - AluSg SINE Alu -11 299 1 1617 157 42 53 chr12 45704690 45704725 -98577764 + L1MB2 LINE L1 6136 6170 -1 429 139 14 0 chr12 45704732 45704804 -98577685 + L1ME LINE L1 5691 5763 -399 1754 161 29 3 chr12 45704832 45705173 -98577316 + L1MA9 LINE L1 5958 6307 -5 2703 113 12 5 chr12 45705650 45706066 -98576423 + L1PA14 LINE L1 5740 6158 -3 399 252 148 0 chr12 45706202 45706317 -98576172 - MIR SINE MIR -72 190 59 240 292 46 0 chr12 45706447 45706512 -98575977 - MIR SINE MIR -180 82 15 24 0 0 0 chr12 45706512 45706536 -98575953 + AT_rich Low_complexity Low_complexity 1 24 0 2695 133 32 16 chr12 45706536 45707157 -98575332 - L1PA10 LINE L1 -8 6297 5665 24 53 0 0 chr12 45707465 45707503 -98574986 + AT_rich Low_complexity Low_complexity 1 38 0 327 269 44 75 chr12 45707763 45707956 -98574533 + L1MC/D LINE L1 4089 4276 -1870 244 286 11 0 chr12 45707978 45708069 -98574420 + L1MC/D LINE L1 5789 5880 -1928 32 0 0 0 chr12 45708284 45708316 -98574173 + AT_rich Low_complexity Low_complexity 1 32 0 244 250 29 15 chr12 45708796 45708864 -98573625 + L2 LINE L2 2307 2375 -939 557 213 37 29 chr12 45709959 45710095 -98572394 - MIR SINE MIR 0 262 126 26 74 0 0 chr12 45710095 45710149 -98572340 + AT_rich Low_complexity Low_complexity 1 54 0 192 262 66 0 chr12 45710149 45710210 -98572279 - MIR SINE MIR -124 138 74 204 238 188 0 chr12 45710259 45710339 -98572150 - MIR SINE MIR -94 168 74 23 0 0 0 chr12 45710351 45710374 -98572115 + AT_rich Low_complexity Low_complexity 1 23 0 208 321 57 19 chr12 45710643 45710749 -98571740 - MIR SINE MIR -105 157 48 4572 41 2 2 chr12 45711423 45711984 -98570505 + L1PA4 LINE L1 5593 6153 -2 216 0 0 0 chr12 45711999 45712023 -98570466 + (A)n Simple_repeat Simple_repeat 1 24 0 655 168 0 0 chr12 45712057 45712164 -98570325 - FLAM_C SINE Alu -36 107 1 2133 119 3 0 chr12 45712195 45712490 -98569999 + AluSc SINE Alu 1 296 -13 292 247 0 0 chr12 45714535 45714612 -98567877 + L2 LINE L2 1008 1084 -2230 385 82 0 16 chr12 45714633 45714694 -98567795 + L1PA6 LINE L1 6095 6154 0 1897 276 70 29 chr12 45714768 45715761 -98566728 + L1M4 LINE L1 3812 4844 -1302 2406 299 44 28 chr12 45716155 45717069 -98565420 + L2 LINE L2 1884 2811 -503 227 195 182 13 chr12 45717122 45717199 -98565290 + MER69 DNA AcHobo 2434 2523 -3 207 374 62 39 chr12 45718018 45718553 -98563936 - L2 LINE L2 -914 2400 1854 305 209 15 15 chr12 45718814 45718881 -98563608 + Charlie8 DNA MER1_type 116 182 -2235 2058 112 37 40 chr12 45719931 45720307 -98562182 - THE1C LTR MaLR 0 375 1 13559 202 46 24 chr12 45721010 45724062 -98558427 + L1PB3 LINE L1 199 3184 -3686 2262 68 3 17 chr12 45724062 45724357 -98558132 + AluY SINE Alu 1 291 -20 13559 202 46 24 chr12 45724357 45727695 -98554794 + L1PB3 LINE L1 3184 6862 -8 793 279 48 6 chr12 45728865 45729177 -98553312 + L1ME3A LINE L1 5638 5962 -208 1939 160 31 18 chr12 45729431 45729813 -98552676 + L1MA8 LINE L1 5902 6288 -3 24 0 0 0 chr12 45729813 45729837 -98552652 + AT_rich Low_complexity Low_complexity 1 24 0 183 392 72 10 chr12 45730300 45730397 -98552092 - L2 LINE L2 -281 2991 2889 6932 9 0 0 chr12 45730445 45731226 -98551263 - L1HS LINE L1 -1 6154 5374 8521 23 0 0 chr12 45731226 45732239 -98550250 + L1HS LINE L1 4350 5362 -784 964 316 16 30 chr12 45732232 45732666 -98549823 + L1MC4a LINE L1 5511 5938 -1870 * 439 308 86 36 chr12 45732875 45733177 -98549312 + L2 LINE L2 2988 3304 -9 1004 206 121 26 chr12 45733299 45733678 -98548811 + Charlie4a DNA MER1_type 35 449 -59 757 261 15 25 chr12 45733990 45734193 -98548296 - MIR SINE MIR -56 206 6 698 245 178 40 chr12 45734235 45734656 -98547833 - L2 LINE L2 -10 3303 2825 226 87 43 0 chr12 45734942 45734988 -98547501 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1421 151 80 20 chr12 45734988 45735239 -98547250 - AluSq SINE Alu -47 266 1 7032 101 18 20 chr12 45735250 45736532 -98545957 - L1MA1 LINE L1 0 6302 5024 224 380 93 0 chr12 45736641 45736749 -98545740 + L2 LINE L2 3154 3271 -1 2344 98 0 0 chr12 45736836 45737133 -98545356 - AluSg SINE Alu -11 299 3 2226 71 42 3 chr12 45737771 45738054 -98544435 - AluSc SINE Alu -15 294 1 297 284 58 71 chr12 45739141 45739296 -98543193 + MIR SINE MIR 46 198 -64 180 0 0 0 chr12 45739644 45739664 -98542825 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr12 45740329 45740359 -98542130 + AT_rich Low_complexity Low_complexity 1 30 0 1529 189 13 42 chr12 45740901 45741213 -98541276 + AluJo SINE Alu 1 303 -9 279 358 25 25 chr12 45741584 45741746 -98540743 + MLT1J2 LTR MaLR 1 162 -288 209 323 32 0 chr12 45741862 45741924 -98540565 + L2 LINE L2 3241 3304 -9 831 166 90 52 chr12 45742752 45742963 -98539526 - MER20 DNA MER1_type 0 219 1 606 314 106 22 chr12 45743446 45743803 -98538686 + LTR16B LTR ERVL 78 464 0 314 247 8 89 chr12 45745939 45746174 -98536315 + L1M4 LINE L1 3842 4057 -2089 25 99 0 0 chr12 45746939 45747020 -98535469 + AT_rich Low_complexity Low_complexity 1 81 0 30 45 0 0 chr12 45747131 45747175 -98535314 + AT_rich Low_complexity Low_complexity 1 44 0 293 24 0 0 chr12 45747304 45747346 -98535143 + L1MA3 LINE L1 6264 6305 0 775 135 153 0 chr12 45748009 45748172 -98534317 + Charlie4 DNA MER1_type 38 225 -1736 366 325 121 70 chr12 45749338 45750051 -98532438 + L1M4 LINE L1 489 1237 -5612 369 194 250 32 chr12 45750677 45750801 -98531688 + MER69 DNA AcHobo 2373 2523 -3 2286 112 0 3 chr12 45751876 45752188 -98530301 - AluSx SINE Alu 0 312 2 1230 183 33 44 chr12 45752657 45752930 -98529559 + AluJo SINE Alu 22 291 -21 28 29 0 0 chr12 45752930 45752965 -98529524 + AT_rich Low_complexity Low_complexity 1 35 0 416 333 53 4 chr12 45753082 45753294 -98529195 + MIR SINE MIR 34 252 -10 1205 155 28 0 chr12 45753498 45753711 -98528778 - MER20 DNA MER1_type 0 219 1 933 218 58 14 chr12 45754138 45754432 -98528057 - L1MEc LINE L1 -4088 2308 2002 654 283 4 22 chr12 45754522 45754748 -98527741 - L1MEc LINE L1 -4638 1758 1537 5047 240 7 12 chr12 45754946 45756247 -98526242 + L1P LINE L1 1026 2319 -3827 3998 179 18 6 chr12 45756532 45757088 -98525401 + L1P LINE L1 4233 4802 -1344 2088 133 0 0 chr12 45757088 45757382 -98525107 + AluSx SINE Alu 19 312 0 3998 179 18 6 chr12 45757382 45757611 -98524878 + L1P LINE L1 4802 5027 -1119 439 265 53 47 chr12 45759320 45759490 -98522999 - L1ME3A LINE L1 -18 6152 5982 2193 113 0 22 chr12 45759665 45759985 -98522504 + AluSq SINE Alu 1 313 0 358 269 125 37 chr12 45759985 45760201 -98522288 + L1M4 LINE L1 3636 3870 -2978 2073 117 0 3 chr12 45760320 45760626 -98521863 + AluSx SINE Alu 1 305 0 451 259 95 19 chr12 45760928 45761245 -98521244 + L1M4 LINE L1 5639 5979 -869 758 225 157 12 chr12 45761271 45761660 -98520829 + L1ME3A LINE L1 5122 5570 -592 731 215 10 25 chr12 45761662 45761862 -98520627 + L1ME3A LINE L1 5724 5920 -250 406 63 0 0 chr12 45761964 45762027 -98520462 + Alu SINE Alu 250 312 -6 219 69 0 0 chr12 45762032 45762061 -98520428 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2276 99 0 0 chr12 45762073 45762367 -98520122 + AluSg SINE Alu 1 294 -16 244 263 61 10 chr12 45762925 45763024 -98519465 - HAL1b LINE L1 -767 581 478 433 291 76 38 chr12 45763092 45763435 -98519054 - HAL1b LINE L1 -896 452 97 324 158 0 0 chr12 45763450 45763507 -98518982 + C-rich Low_complexity Low_complexity 3 59 0 4836 158 34 1 chr12 45763608 45763766 -98518723 - L1PB1 LINE L1 -198 5953 5802 513 0 0 0 chr12 45763766 45763823 -98518666 + (TA)n Simple_repeat Simple_repeat 2 58 0 4836 158 34 1 chr12 45763823 45765322 -98517167 - L1PB1 LINE L1 -349 5802 4238 2450 250 87 10 chr12 45765322 45766119 -98516370 - L1MEc LINE L1 -5102 1294 437 2259 74 7 17 chr12 45769554 45769850 -98512639 - AluY SINE Alu -18 293 1 1397 123 9 0 chr12 45773542 45773753 -98508736 - L1MA3 LINE L1 -417 5888 5676 2540 62 0 7 chr12 45774821 45775129 -98507360 - AluY SINE Alu -5 306 1 1491 172 64 17 chr12 45775193 45775490 -98506999 + AluJb SINE Alu 1 311 -1 244 378 58 17 chr12 45775746 45775918 -98506571 + L2 LINE L2 2934 3112 -160 222 37 0 0 chr12 45777369 45777396 -98505093 + (TG)n Simple_repeat Simple_repeat 1 27 0 245 183 17 0 chr12 45777396 45777456 -98505033 + GA-rich Low_complexity Low_complexity 2 62 0 334 331 79 16 chr12 45782451 45782578 -98499911 - L2 LINE L2 -16 3256 3122 4103 51 34 6 chr12 45782772 45783331 -98499158 + L1PA7 LINE L1 5600 6173 0 328 296 0 0 chr12 45783358 45783429 -98499060 - L2 LINE L2 -2 3270 3200 909 225 16 32 chr12 45783512 45783765 -98498724 + LTR52 LTR ERVL 2 250 -171 13329 23 0 5 chr12 45783765 45785359 -98497130 - L1P LINE L1 -1690 4456 2871 3988 7 0 0 chr12 45785357 45785807 -98496682 + L1HS LINE L1 5706 6155 0 * 194 104 0 83 chr12 45785809 45785857 -98496632 + (A)n Simple_repeat Simple_repeat 1 44 0 390 219 55 77 chr12 45785857 45786040 -98496449 + LTR52 LTR ERVL 243 421 0 1886 246 70 31 chr12 45786041 45786581 -98495908 + MLT1E LTR MaLR 33 593 0 1831 215 22 17 chr12 45787507 45787957 -98494532 - L1MC3 LINE L1 -19 7766 7341 366 336 76 40 chr12 45787975 45788225 -98494264 - L2 LINE L2 -574 2740 2482 214 377 18 0 chr12 45788227 45788341 -98494148 - L2 LINE L2 -1218 2096 1981 274 313 61 27 chr12 45788638 45788785 -98493704 - MIR SINE MIR 0 262 111 192 224 0 0 chr12 45788922 45788971 -98493518 + L2 LINE L2 3264 3312 -1 270 295 0 67 chr12 45789516 45789621 -98492868 + L2 LINE L2 3198 3295 -18 1575 298 68 16 chr12 45790011 45790639 -98491850 - MLT2F LTR ERVL -2 661 1 234 232 208 56 chr12 45791819 45791944 -98490545 + MIR SINE MIR 100 243 -19 1937 174 14 8 chr12 45791944 45792305 -98490184 - MLT1A1 LTR MaLR -2 363 1 253 263 0 0 chr12 45793049 45793106 -98489383 - L2 LINE L2 -16 3297 3241 2547 54 0 0 chr12 45794537 45794834 -98487655 + AluY SINE Alu 1 297 -14 494 251 47 47 chr12 45795080 45795271 -98487218 - L2 LINE L2 0 3313 3123 23 0 0 0 chr12 45795897 45795920 -98486569 + AT_rich Low_complexity Low_complexity 1 23 0 666 100 0 0 chr12 45795966 45796056 -98486433 - AluSg/x SINE Alu -12 300 211 24 0 0 0 chr12 45796315 45796339 -98486150 + AT_rich Low_complexity Low_complexity 1 24 0 656 159 0 6 chr12 45796385 45796631 -98485858 + AluJ SINE Alu 7 301 -11 2533 156 31 21 chr12 45797286 45797772 -98484717 - L1PA16 LINE L1 0 6166 5676 409 296 123 48 chr12 45799070 45799421 -98483068 + L2 LINE L2 2109 2485 -829 497 281 176 0 chr12 45800442 45800595 -98481894 + MER5A DNA MER1_type 4 183 -6 322 219 26 0 chr12 45801224 45801338 -98481151 + CT-rich Low_complexity Low_complexity 4 120 0 261 319 116 7 chr12 45801838 45801976 -98480513 + MIR3 SINE MIR 56 208 0 1818 142 23 32 chr12 45802601 45802910 -98479579 - AluSx SINE Alu -6 306 1 21 57 0 0 chr12 45804494 45804529 -98477960 + AT_rich Low_complexity Low_complexity 1 35 0 4952 127 43 82 chr12 45804626 45805881 -98476608 - L1MA8 LINE L1 -4 6287 5088 7129 26 0 2 chr12 45805881 45806714 -98475775 + L1PA3 LINE L1 5317 6152 -3 183 42 0 0 chr12 45806723 45806747 -98475742 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr12 45807421 45807451 -98475038 + AT_rich Low_complexity Low_complexity 1 30 0 6096 172 25 1 chr12 45807467 45808637 -98473852 - L1MA8 LINE L1 -1053 5093 3896 1127 172 0 5 chr12 45808629 45808838 -98473651 - L1MA8 LINE L1 -2508 3638 3431 * 1785 238 78 17 chr12 45808956 45809597 -98472892 - L1ME1 LINE L1 -7 6553 5782 20134 75 3 3 chr12 45809597 45813091 -98469398 + L1PA6 LINE L1 2653 6151 -3 1785 238 78 17 chr12 45813091 45813350 -98469139 - L1ME1 LINE L1 -778 5782 5540 1015 165 0 6 chr12 45813356 45813514 -98468975 - AluJb SINE Alu -21 291 135 1589 163 4 8 chr12 45813514 45813765 -98468724 - AluSx SINE Alu -14 298 49 8330 137 21 18 chr12 45813766 45816289 -98466200 - L1MA1 LINE L1 -77 6225 3701 1773 246 31 20 chr12 45816275 45816730 -98465759 - L1M1 LINE L1 -7081 484 25 * 4437 251 116 39 chr12 45816735 45818020 -98464469 - L1ME1 LINE L1 -1140 5400 4215 2533 23 40 10 chr12 45818020 45818322 -98464167 - AluY SINE Alu 0 311 1 4437 251 116 39 chr12 45818322 45819014 -98463475 - L1ME1 LINE L1 -2325 4215 3577 2209 113 3 0 chr12 45819014 45819307 -98463182 - AluSp SINE Alu -19 294 1 4437 251 116 39 chr12 45819307 45819741 -98462748 - L1ME1 LINE L1 -2963 3577 2803 4829 158 32 13 chr12 45819773 45821071 -98461418 - L1MA4A LINE L1 -27 6276 4893 1955 285 127 81 chr12 45821090 45822464 -98460025 - L1M2 LINE L1 -5404 1445 8 7870 16 0 0 chr12 45822560 45823631 -98458858 - L1PA3 LINE L1 0 6155 5085 5746 26 0 1 chr12 45823631 45824319 -98458170 + L1PA3 LINE L1 4424 5110 -1036 186 235 49 49 chr12 45824327 45824408 -98458081 - L2 LINE L2 -2535 779 699 820 247 66 34 chr12 45824430 45824864 -98457625 - L1ME1 LINE L1 -3726 2848 2407 348 282 47 39 chr12 45824889 45825144 -98457345 - L1ME1 LINE L1 -4358 2182 1926 1438 235 29 2 chr12 45825235 45825647 -98456842 - L1ME2 LINE L1 -232 6212 5764 239 182 121 61 chr12 45825662 45825761 -98456728 - L1ME2 LINE L1 -656 5802 5698 562 207 0 33 chr12 45825761 45825882 -98456607 - L1MC1 LINE L1 -6 6327 6211 566 155 70 8 chr12 45825924 45826053 -98456436 - L1ME2 LINE L1 -3126 3300 3164 1290 246 56 13 chr12 45826062 45826509 -98455980 - L1ME2 LINE L1 -3510 2916 2451 1678 128 30 0 chr12 45826512 45826809 -98455680 - L1ME2 LINE L1 -4069 2357 2052 270 0 0 0 chr12 45826826 45826856 -98455633 + (TG)n Simple_repeat Simple_repeat 1 30 0 7011 175 28 76 chr12 45826883 45827540 -98454949 - L1ME2 LINE L1 -4752 1674 987 1727 153 15 8 chr12 45827540 45827802 -98454687 - AluSx SINE Alu -44 268 5 7011 175 28 76 chr12 45827802 45828084 -98454405 - L1ME2 LINE L1 -5439 987 693 2305 138 25 0 chr12 45828084 45828439 -98454050 - THE1B LTR MaLR 0 364 1 7011 175 28 76 chr12 45828439 45829187 -98453302 - L1ME2 LINE L1 -5733 693 66 738 252 121 53 chr12 45829212 45829826 -98452663 - L1ME LINE L1 -4613 1467 819 383 22 0 0 chr12 45831544 45831589 -98450900 - L1P LINE L1 -1678 4468 4424 7842 17 0 0 chr12 45831589 45832660 -98449829 + L1PA3 LINE L1 5085 6155 0 1793 298 12 12 chr12 45832756 45833243 -98449246 + L1M2 LINE L1 8 494 -6355 228 386 80 0 chr12 45833260 45833423 -98449066 + L1M2 LINE L1 610 785 -6064 913 348 53 13 chr12 45833482 45833956 -98448533 + L1M2 LINE L1 580 1072 -5777 1451 271 125 51 chr12 45834273 45835670 -98446819 - L1ME LINE L1 -4613 1467 6 24 0 0 0 chr12 45835831 45835855 -98446634 + AT_rich Low_complexity Low_complexity 1 24 0 274 271 47 12 chr12 45835872 45835957 -98446532 - L2 LINE L2 -5 3308 3221 652 278 96 86 chr12 45838859 45838920 -98443569 + LTR33 LTR ERVL 7 66 -455 2467 41 9 35 chr12 45838920 45839239 -98443250 - AluY SINE Alu 0 311 1 652 278 96 86 chr12 45839239 45839479 -98443010 + LTR33 LTR ERVL 66 311 -210 294 73 0 0 chr12 45839479 45839520 -98442969 + (TC)n Simple_repeat Simple_repeat 1 41 0 777 318 99 56 chr12 45839568 45840373 -98442116 + L2 LINE L2 1921 2760 -554 320 394 39 26 chr12 45840655 45840810 -98441679 + L2 LINE L2 3112 3268 -4 1709 163 5 122 chr12 45840831 45841273 -98441216 + MLT1B LTR MaLR 1 390 0 22 70 0 0 chr12 45841287 45841330 -98441159 + AT_rich Low_complexity Low_complexity 1 43 0 204 343 36 50 chr12 45841683 45841823 -98440666 - L2 LINE L2 0 3313 3176 7821 116 37 3 chr12 45842254 45843442 -98439047 + Tigger1 DNA MER2_type 1191 2418 0 357 338 79 47 chr12 45843446 45843763 -98438726 + L3 LINE CR1 1247 1573 -4 235 316 32 21 chr12 45845530 45845625 -98436864 + MIR3 SINE MIR 108 203 -5 256 302 0 0 chr12 45845651 45845714 -98436775 + CT-rich Low_complexity Low_complexity 1 63 0 25 51 0 0 chr12 45845721 45845760 -98436729 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr12 45845837 45845867 -98436622 + AT_rich Low_complexity Low_complexity 1 30 0 6719 51 6 10 chr12 45846302 45847737 -98434752 - L1PA7 LINE L1 0 6154 4709 714 269 98 37 chr12 45850978 45851275 -98431214 - MER102b DNA MER1_type -1 340 26 248 210 272 12 chr12 45851315 45851396 -98431093 + L2 LINE L2 3190 3291 -22 2383 88 3 3 chr12 45852241 45852547 -98429942 - AluSc SINE Alu -3 306 1 2011 121 21 3 chr12 45853062 45853351 -98429138 + AluSx SINE Alu 1 294 -18 327 342 17 17 chr12 45853370 45853487 -98429002 + MER5A DNA MER1_type 72 188 -1 3522 75 4 11 chr12 45854042 45854511 -98427978 + MER41A LTR ERV1 1 466 -88 499 311 31 18 chr12 45854543 45854768 -98427721 - MIR SINE MIR -2 260 33 1132 292 62 8 chr12 45856096 45856452 -98426037 + LTR16A LTR ERVL 28 402 -48 23 0 0 0 chr12 45857784 45857807 -98424682 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr12 45857934 45857968 -98424521 + AT_rich Low_complexity Low_complexity 1 34 0 339 286 119 48 chr12 45858312 45858480 -98424009 + MIR SINE MIR 70 249 -13 340 213 52 97 chr12 45858516 45858670 -98423819 + MIR SINE MIR 63 207 -43 309 338 15 23 chr12 45858684 45858817 -98423672 - MIR SINE MIR -109 153 22 245 306 75 30 chr12 45859035 45859234 -98423255 + L2 LINE L2 2453 2660 -654 904 225 20 5 chr12 45859299 45859499 -98422990 - MER63A DNA MER1_type 0 210 8 205 250 21 0 chr12 45859539 45859587 -98422902 + L2 LINE L2 3261 3309 -4 1217 168 105 0 chr12 45859731 45859940 -98422549 + AluSx SINE Alu 1 231 -81 181 300 33 0 chr12 45859946 45860006 -98422483 - MIR SINE MIR -131 131 70 387 163 0 7 chr12 45860348 45860425 -98422064 + AluJ/FRAM SINE Alu 233 295 -7 267 316 51 0 chr12 45860487 45860604 -98421885 + L2 LINE L2 2920 3042 -230 23 54 0 0 chr12 45861262 45861299 -98421190 + AT_rich Low_complexity Low_complexity 1 37 0 314 218 0 46 chr12 45861523 45861610 -98420879 - L1MC4 LINE L1 -1346 6696 6614 1478 192 34 86 chr12 45861615 45862000 -98420489 - MLT1A1 LTR MaLR 0 365 1 2555 193 46 59 chr12 45862021 45862634 -98419855 + MER77 LTR ERV1 1 605 0 264 192 19 0 chr12 45862775 45862827 -98419662 - MIR SINE MIR -113 149 97 456 314 58 11 chr12 45862853 45863044 -98419445 - MIR SINE MIR -62 200 1 596 318 86 13 chr12 45863641 45863874 -98418615 + MIR SINE MIR 2 251 -11 204 163 0 0 chr12 45866442 45866485 -98416004 + T-rich Low_complexity Low_complexity 1 43 0 30 45 0 0 chr12 45866602 45866646 -98415843 + AT_rich Low_complexity Low_complexity 1 44 0 489 309 126 41 chr12 45866906 45867366 -98415123 + L2 LINE L2 1608 2106 -1208 313 352 41 7 chr12 45870031 45870176 -98412313 + MIR SINE MIR 37 186 -76 1468 197 53 3 chr12 45871273 45871572 -98410917 - MLT1A1 LTR MaLR -51 314 1 939 169 0 0 chr12 45871604 45871770 -98410719 - L1MA6 LINE L1 -2 6298 6133 25 65 0 0 chr12 45872014 45872060 -98410429 + AT_rich Low_complexity Low_complexity 1 46 0 282 160 0 0 chr12 45872884 45872934 -98409555 + (TATG)n Simple_repeat Simple_repeat 2 51 0 205 71 0 48 chr12 45872976 45873018 -98409471 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 4664 33 0 0 chr12 45873018 45873563 -98408926 - L1PA4 LINE L1 -24 6131 5587 1036 238 26 67 chr12 45873662 45874003 -98408486 - LTR40b LTR ERVL -4 458 132 345 18 36 18 chr12 45874043 45874098 -98408391 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 273 247 0 0 chr12 45874123 45874220 -98408269 + (TA)n Simple_repeat Simple_repeat 1 97 0 1373 202 101 60 chr12 45874421 45874906 -98407583 + MLT1D LTR MaLR 1 505 0 292 254 105 9 chr12 45874937 45875051 -98407438 + L1ME4a LINE L1 5956 6080 -41 471 268 126 47 chr12 45875494 45875748 -98406741 + Charlie2 DNA MER1_type 2 275 -2507 620 229 65 25 chr12 45875750 45876029 -98406460 + Charlie2 DNA MER1_type 2176 2465 -397 2179 84 14 7 chr12 45877328 45877615 -98404874 + AluSg SINE Alu 3 291 -19 326 162 162 19 chr12 45878556 45878661 -98403828 - MER113 DNA MER1_type? -367 154 35 26 0 0 49 chr12 45878961 45878981 -98403508 + AT_rich Low_complexity Low_complexity 1 20 -19 2157 127 0 0 chr12 45878981 45879280 -98403209 - AluY SINE Alu -12 299 1 26 0 0 49 chr12 45879280 45879300 -98403189 + AT_rich Low_complexity Low_complexity 20 39 0 1630 196 36 0 chr12 45879301 45879663 -98402826 + L1M4 LINE L1 4439 4813 -1333 929 314 62 40 chr12 45879671 45880175 -98402314 + L1M2 LINE L1 1 515 -6334 288 351 56 32 chr12 45880220 45880503 -98401986 + L1M2 LINE L1 668 1565 -5273 2293 110 0 19 chr12 45881126 45881443 -98401046 + AluSx SINE Alu 1 311 -1 355 262 0 0 chr12 45881544 45881628 -98400861 + L1PA15-16 LINE L1 1472 1555 -5294 5564 245 21 21 chr12 45881662 45884310 -98398179 + L1PA15-16 LINE L1 1397 4147 -2702 272 273 128 43 chr12 45884311 45884498 -98397991 - L1ME LINE L1 -344 5777 5575 27 0 0 0 chr12 45884991 45885018 -98397471 + AT_rich Low_complexity Low_complexity 1 27 0 26 64 0 0 chr12 45885028 45885075 -98397414 + AT_rich Low_complexity Low_complexity 1 47 0 283 284 40 0 chr12 45885137 45885211 -98397278 + MIR SINE MIR 1 77 -185 685 284 66 0 chr12 45885251 45885448 -98397041 + MIR SINE MIR 53 262 0 231 276 19 38 chr12 45885980 45886085 -98396404 + (TA)n Simple_repeat Simple_repeat 1 103 0 334 260 66 88 chr12 45886796 45886977 -98395512 + MER69A DNA AcHobo 1 177 0 748 273 91 74 chr12 45888388 45888872 -98393617 + MLT1J LTR MaLR 2 493 -18 248 37 0 74 chr12 45889455 45889509 -98392980 + (TCTCCC)n Simple_repeat Simple_repeat 1 50 0 5978 75 38 51 chr12 45889509 45890529 -98391960 + SVA Other Other 1 868 -592 6011 81 42 40 chr12 45891631 45892577 -98389912 + SVA Other Other 439 1386 0 15089 190 21 23 chr12 45892596 45894387 -98388102 + L1PA15 LINE L1 1891 3686 -2479 288 0 0 0 chr12 45894387 45894419 -98388070 + (CA)n Simple_repeat Simple_repeat 2 33 0 15089 190 21 23 chr12 45894419 45895388 -98387101 + L1PA15 LINE L1 3686 4656 -1509 340 200 0 0 chr12 45895388 45895443 -98387046 + 5S rRNA rRNA 1 55 -66 15089 190 21 23 chr12 45895443 45896845 -98385644 + L1PA15 LINE L1 4656 6096 -69 30 45 0 0 chr12 45898788 45898832 -98383657 + AT_rich Low_complexity Low_complexity 1 44 0 830 185 27 0 chr12 45898832 45898978 -98383511 - FRAM SINE Alu -30 146 1 2025 61 82 4 chr12 45899224 45899504 -98382985 + AluY SINE Alu 1 302 -9 229 287 108 31 chr12 45899532 45899661 -98382828 - MIR SINE MIR -122 140 2 2467 51 0 0 chr12 45899861 45900157 -98382332 + AluY SINE Alu 1 296 -15 22 35 0 0 chr12 45900280 45900309 -98382180 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr12 45900324 45900375 -98382114 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr12 45900515 45900544 -98381945 + AT_rich Low_complexity Low_complexity 1 29 0 2035 128 3 0 chr12 45900831 45901129 -98381360 + AluSx SINE Alu 1 299 -13 329 229 101 9 chr12 45901599 45901708 -98380781 - LTR67 LTR ERVL 0 557 439 308 312 199 11 chr12 45903118 45903304 -98379185 + L2 LINE L2 2738 2958 -356 7232 123 19 1 chr12 45903358 45905305 -98377184 - L1MA2 LINE L1 0 6304 4321 1123 162 10 0 chr12 45905306 45905503 -98376986 + LTR9B LTR ERV1 445 643 -1 2406 190 16 37 chr12 45905503 45906019 -98376470 + HUERS-P3b LTR ERV1 1 505 -6913 4918 116 11 9 chr12 45906134 45907516 -98374973 + HUERS-P3b LTR ERV1 891 2337 -5081 1184 147 39 20 chr12 45907500 45907704 -98374785 + HUERS-P3b LTR ERV1 2451 2658 -4760 * 2003 189 50 5 chr12 45907704 45908086 -98374403 - LTR8 LTR ERV1 -292 399 1 5955 84 4 12 chr12 45908086 45908895 -98373594 + HUERS-P3b LTR ERV1 3073 3874 -3544 * 16417 100 15 7 chr12 45908886 45911488 -98371001 + HUERS-P3b LTR ERV1 4713 8918 -1 3241 106 58 40 chr12 45911488 45912038 -98370451 + LTR9B LTR ERV1 1 560 -84 592 94 0 0 chr12 45912064 45912149 -98370340 - L1 LINE L1 -1816 4330 4246 416 108 0 15 chr12 45912150 45912215 -98370274 - Alu SINE Alu -15 297 234 2851 199 66 7 chr12 45912219 45912782 -98369707 - L1M1 LINE L1 -6673 892 297 3704 164 42 5 chr12 45912783 45913635 -98368854 - L1 LINE L1 -3211 4354 3461 18944 153 26 56 chr12 45913646 45915533 -98366956 - L1 LINE L1 -4067 3498 1767 267 31 0 0 chr12 45915533 45915565 -98366924 + (TC)n Simple_repeat Simple_repeat 1 32 0 18944 153 26 56 chr12 45915565 45917270 -98365219 - L1 LINE L1 -5798 1767 13 499 304 144 8 chr12 45917285 45917548 -98364941 + L2 LINE L2 3014 3312 -1 416 316 86 0 chr12 45917725 45917842 -98364647 + L2 LINE L2 3146 3272 0 545 192 0 58 chr12 45917957 45918077 -98364412 - L2 LINE L2 -1 3312 3200 303 286 120 56 chr12 45918385 45918651 -98363838 - L1 LINE L1 -3627 2519 2237 911 309 33 25 chr12 45918750 45919109 -98363380 - LTR16B LTR ERVL -26 438 77 281 262 67 20 chr12 45919213 45919228 -98363261 - L1MA10 LINE L1 -3 6331 6317 1764 182 46 105 chr12 45919228 45919694 -98362795 - L1ME2 LINE L1 -9 6224 5732 2361 58 0 4 chr12 45919694 45920005 -98362484 - AluSc SINE Alu 0 317 8 1764 182 46 105 chr12 45920005 45920164 -98362325 - L1ME2 LINE L1 -501 5732 5635 1906 128 32 52 chr12 45920164 45920508 -98361981 + MER1B DNA MER1_type 1 337 0 1764 182 46 105 chr12 45920508 45920527 -98361962 - L1ME2 LINE L1 -598 5635 5616 1525 231 58 25 chr12 45920556 45921109 -98361380 - L1ME2 LINE L1 -1543 4672 4102 1007 164 6 17 chr12 45921395 45921572 -98360917 + FAM SINE Alu 1 175 0 24 32 0 0 chr12 45923346 45923377 -98359112 + AT_rich Low_complexity Low_complexity 1 31 0 223 237 51 0 chr12 45923758 45923817 -98358672 + MIR SINE MIR 180 241 -21 3469 130 41 3 chr12 45923893 45924557 -98357932 - L1MA8 LINE L1 -426 5865 5170 400 129 48 0 chr12 45924623 45924685 -98357804 + AluS SINE Alu 2 66 -237 2493 84 0 0 chr12 45924714 45925023 -98357466 + AluSc SINE Alu 1 309 0 288 0 0 0 chr12 45925027 45925059 -98357430 + (TA)n Simple_repeat Simple_repeat 2 33 0 315 189 63 11 chr12 45925428 45925523 -98356966 + L1ME3A LINE L1 5850 5949 -221 1787 282 49 34 chr12 45925688 45926443 -98356046 - L1ME2 LINE L1 -2500 3715 2940 1904 126 30 0 chr12 45926443 45926712 -98355777 + AluSx SINE Alu 23 299 -13 1787 282 49 34 chr12 45926712 45926934 -98355555 - L1ME2 LINE L1 -3275 2940 2723 380 259 48 7 chr12 45926953 45927100 -98355389 - L1ME2 LINE L1 -4934 1462 1310 291 244 237 22 chr12 45927118 45927253 -98355236 + MIR SINE MIR 98 261 -1 265 315 141 33 chr12 45927398 45927582 -98354907 + MIR SINE MIR 2 205 -57 208 299 75 0 chr12 45927742 45927809 -98354680 - L2 LINE L2 -8 3264 3193 1806 130 75 32 chr12 45928009 45928354 -98354135 + MER46B DNA MER2_type 2 236 0 21 0 0 0 chr12 45930601 45930622 -98351867 + AT_rich Low_complexity Low_complexity 1 21 0 186 318 0 0 chr12 45930668 45930712 -98351777 - L2 LINE L2 -19 3253 3210 1033 226 89 71 chr12 45930972 45931476 -98351013 + MER113 DNA MER1_type? 4 516 -5 1761 85 147 4 chr12 45931649 45931907 -98350582 - AluSg SINE Alu -15 295 1 249 293 53 33 chr12 45931994 45932144 -98350345 + MIR SINE MIR 64 216 -46 5816 114 21 0 chr12 45932311 45932765 -98349724 + L1PA15 LINE L1 4690 5133 -1032 2200 118 0 0 chr12 45932765 45933061 -98349428 + AluSx SINE Alu 1 296 -16 5816 114 21 0 chr12 45933061 45934073 -98348416 + L1PA15 LINE L1 5133 6163 -2 21 57 0 0 chr12 45934703 45934738 -98347751 + AT_rich Low_complexity Low_complexity 1 35 0 1099 238 8 4 chr12 45934968 45935212 -98347277 - MIR SINE MIR -11 251 7 196 356 69 11 chr12 45935856 45935943 -98346546 - MIR SINE MIR -145 117 26 181 342 135 0 chr12 45936431 45936542 -98345947 + MIR SINE MIR 129 254 -8 1124 211 66 36 chr12 45937469 45937828 -98344661 + L1ME1 LINE L1 5809 6158 -8 1446 172 61 40 chr12 45938395 45938691 -98343798 + AluJo SINE Alu 3 304 -8 259 293 120 52 chr12 45938795 45938986 -98343503 - L3 LINE CR1 -264 1313 1110 218 253 12 108 chr12 45939059 45939142 -98343347 - L3 LINE CR1 -485 1092 1018 714 342 83 23 chr12 45939151 45939499 -98342990 - L3 LINE CR1 -861 716 348 246 86 0 0 chr12 45940137 45940172 -98342317 + HSMAR1 DNA Mariner 1 35 -1252 938 293 91 61 chr12 45940315 45940755 -98341734 + MLT1K LTR MaLR 136 588 0 401 331 80 11 chr12 45940891 45941066 -98341423 + MIR3 SINE MIR 16 202 -6 2557 55 0 6 chr12 45941253 45941564 -98340925 + AluY SINE Alu 1 309 -2 30 0 0 0 chr12 45941564 45941594 -98340895 + AT_rich Low_complexity Low_complexity 1 30 0 2135 115 3 0 chr12 45941998 45942293 -98340196 - AluSg SINE Alu -14 296 1 202 392 92 0 chr12 45943360 45943480 -98339009 + MER5A DNA MER1_type 59 189 0 27 0 0 0 chr12 45943657 45943684 -98338805 + AT_rich Low_complexity Low_complexity 1 27 0 40 37 0 0 chr12 45943770 45943824 -98338665 + AT_rich Low_complexity Low_complexity 1 54 0 633 278 126 5 chr12 45943824 45944047 -98338442 - MIR SINE MIR 0 262 13 26 88 0 0 chr12 45945127 45945195 -98337294 + AT_rich Low_complexity Low_complexity 1 68 0 1873 95 4 0 chr12 45945653 45945905 -98336584 - AluSg SINE Alu -12 298 46 298 250 97 28 chr12 45946452 45946524 -98335965 - L3 LINE CR1 -15 1562 1486 * 389 317 43 19 chr12 45946520 45946681 -98335808 - L2 LINE L2 0 3313 3149 1668 215 132 35 chr12 45946842 45947335 -98335154 + MLT1F LTR MaLR 1 541 -1 509 260 35 81 chr12 45947534 45947707 -98334782 - MIR SINE MIR -34 228 64 255 354 152 0 chr12 45947839 45947938 -98334551 - L3 LINE CR1 -410 1167 1054 25 51 0 0 chr12 45948157 45948196 -98334293 + AT_rich Low_complexity Low_complexity 1 39 0 436 228 13 0 chr12 45949024 45949103 -98333386 + MER81 DNA DNA 32 111 -3 233 264 14 93 chr12 45949381 45949521 -98332968 + L1M4 LINE L1 3409 3537 -2609 2441 61 0 0 chr12 45949701 45949995 -98332494 + AluY SINE Alu 1 294 -17 2030 110 51 54 chr12 45950449 45950821 -98331668 + THE1C LTR MaLR 1 371 -4 411 271 20 66 chr12 45951007 45951158 -98331331 - MER5B DNA MER1_type 0 178 35 1068 200 33 19 chr12 45951178 45951393 -98331096 + MER58A DNA MER1_type 1 218 -6 2659 108 16 0 chr12 45951517 45951886 -98330603 + THE1C LTR MaLR 1 375 0 337 277 95 0 chr12 45953361 45953509 -98328980 + L1ME LINE L1 5617 5778 -343 21 0 0 0 chr12 45953558 45953579 -98328910 + AT_rich Low_complexity Low_complexity 1 21 0 2344 104 3 0 chr12 45953631 45953939 -98328550 + AluSq SINE Alu 1 309 -4 2159 113 3 3 chr12 45954099 45954392 -98328097 - AluSx SINE Alu -19 293 1 2098 107 0 0 chr12 45955023 45955327 -98327162 - AluSc SINE Alu 0 304 1 3121 106 13 11 chr12 45955617 45955707 -98326782 + L1PA16 LINE L1 5690 5778 -388 1379 204 50 0 chr12 45955707 45955986 -98326503 + AluJo SINE Alu 1 293 -19 3121 106 13 11 chr12 45955986 45956369 -98326120 + L1PA16 LINE L1 5778 6164 -2 21 36 0 0 chr12 45956683 45956711 -98325778 + AT_rich Low_complexity Low_complexity 1 28 0 836 333 42 15 chr12 45956891 45957293 -98325196 + L1MEc LINE L1 35 447 -5949 1506 195 55 111 chr12 45957314 45957512 -98324977 - MLT1F LTR MaLR -8 534 327 7403 34 19 0 chr12 45957512 45958472 -98324017 - L1PA5 LINE L1 -9 6145 5186 1506 195 55 111 chr12 45958472 45958725 -98323764 - MLT1F LTR MaLR -215 327 108 2239 164 45 14 chr12 45958793 45959214 -98323275 + L1MB3 LINE L1 5748 6181 -2 264 262 60 83 chr12 45959466 45959634 -98322855 - MIR SINE MIR -11 251 88 428 228 269 0 chr12 45959997 45960142 -98322347 + MER5A DNA MER1_type 1 184 -5 954 321 135 18 chr12 45962560 45963108 -98319381 + L2 LINE L2 321 932 -2382 582 308 121 38 chr12 45963148 45963480 -98319009 + L2 LINE L2 2677 2980 -333 2333 78 0 7 chr12 45963480 45963775 -98318714 - AluSg SINE Alu -16 294 2 582 308 121 38 chr12 45963775 45963991 -98318498 + L2 LINE L2 2980 3312 -1 194 316 98 47 chr12 45964099 45964333 -98318156 - L2 LINE L2 -353 2961 2716 231 36 0 0 chr12 45964971 45964999 -98317490 + (CA)n Simple_repeat Simple_repeat 1 28 0 2294 80 7 3 chr12 45965894 45966196 -98316293 + AluSx SINE Alu 3 305 -7 1215 249 154 27 chr12 45966413 45967289 -98315200 + L2 LINE L2 2341 3310 -3 361 267 127 27 chr12 45967776 45967926 -98314563 - MIR SINE MIR -14 248 84 240 193 114 23 chr12 45968375 45968463 -98314026 - L1ME4a LINE L1 -48 6073 5978 182 282 0 0 chr12 45969132 45969171 -98313318 + L2 LINE L2 1380 1418 -1896 253 274 164 14 chr12 45969337 45969410 -98313079 + Charlie1 DNA MER1_type 1 84 -2677 * 2630 174 86 0 chr12 45969396 45969964 -98312525 + Charlie1 DNA MER1_type 2144 2760 -1 256 293 0 37 chr12 45969977 45970059 -98312430 + C-rich Low_complexity Low_complexity 3 81 0 7803 104 27 55 chr12 45970388 45970453 -98312036 - HSMAR2 DNA Mariner -1 1301 1236 2115 118 17 0 chr12 45970453 45970740 -98311749 + AluSx SINE Alu 7 298 -14 7803 104 27 55 chr12 45970740 45972010 -98310479 - HSMAR2 DNA Mariner -66 1236 3 245 257 38 67 chr12 45972045 45972150 -98310339 + L2 LINE L2 2251 2352 -962 591 307 153 39 chr12 45972173 45972864 -98309625 + L2 LINE L2 2471 3234 -38 198 316 79 13 chr12 45972952 45973028 -98309461 + MIR SINE MIR 8 88 -174 320 346 32 0 chr12 45973059 45973215 -98309274 - L2 LINE L2 0 3313 3153 192 338 41 35 chr12 45974765 45974910 -98307579 + MIR SINE MIR 11 156 -106 857 274 16 92 chr12 45975486 45975683 -98306806 + L1MC4a LINE L1 7020 7230 -578 1827 149 30 0 chr12 45975683 45975951 -98306538 + AluJb SINE Alu 1 276 -36 857 274 16 92 chr12 45975951 45976253 -98306236 + L1MC4a LINE L1 7230 7481 -327 346 152 61 91 chr12 45976278 45976410 -98306079 + L1MC4 LINE L1 7914 8041 -1 314 290 37 62 chr12 45976665 45976827 -98305662 + MIR SINE MIR 3 160 -102 2232 119 12 91 chr12 45977058 45977488 -98305001 + MSTD LTR MaLR 1 396 0 310 333 32 16 chr12 45978108 45978294 -98304195 - MER5A DNA MER1_type 0 189 1 25 51 0 0 chr12 45979153 45979192 -98303297 + AT_rich Low_complexity Low_complexity 1 39 0 279 266 76 0 chr12 45980083 45980162 -98302327 + MIR SINE MIR 70 154 -108 2194 96 13 10 chr12 45980546 45980848 -98301641 - AluY SINE Alu -8 303 1 569 318 120 5 chr12 45981144 45981361 -98301128 - MIR SINE MIR 0 262 21 259 187 93 101 chr12 45981554 45981632 -98300857 - L1ME4a LINE L1 -7 6114 6036 893 97 0 8 chr12 45981632 45981756 -98300733 + L1PA10 LINE L1 6036 6158 -10 259 187 93 101 chr12 45981756 45981816 -98300673 - L1ME4a LINE L1 -85 6036 5977 601 276 75 27 chr12 45981829 45982123 -98300366 - L1ME4a LINE L1 -262 5859 5552 2160 75 51 14 chr12 45982180 45982475 -98300014 - AluY SINE Alu -5 306 1 630 274 75 0 chr12 45982500 45982686 -98299803 + MIR SINE MIR 60 259 -3 547 298 56 23 chr12 45982844 45983059 -98299430 - MIR SINE MIR -21 241 20 1747 177 10 3 chr12 45983414 45983708 -98298781 + AluJo SINE Alu 1 296 -16 25 0 0 0 chr12 45983887 45983912 -98298577 + AT_rich Low_complexity Low_complexity 1 25 0 324 354 19 0 chr12 45984705 45984863 -98297626 + L2 LINE L2 1847 2007 -1307 22 35 0 0 chr12 45985077 45985106 -98297383 + AT_rich Low_complexity Low_complexity 1 29 0 246 284 27 131 chr12 45985129 45985312 -98297177 - L2 LINE L2 -221 3051 2888 1136 205 35 35 chr12 45985322 45985576 -98296913 + AluJo SINE Alu 37 290 -22 1460 305 163 39 chr12 45985587 45986796 -98295693 - L2 LINE L2 -428 2886 1528 2211 93 10 0 chr12 45986875 45987175 -98295314 - AluSp SINE Alu -10 303 1 266 376 126 17 chr12 45987209 45987917 -98294572 + L2 LINE L2 2201 3063 -209 207 100 0 0 chr12 45988509 45988539 -98293950 + (CATA)n Simple_repeat Simple_repeat 2 31 0 28 48 0 0 chr12 45989590 45989632 -98292857 + AT_rich Low_complexity Low_complexity 1 42 0 1741 157 7 27 chr12 45989632 45989926 -98292563 - AluJb SINE Alu -24 288 1 340 339 31 8 chr12 45990182 45990309 -98292180 + MIR3 SINE MIR 54 183 -25 1656 124 25 84 chr12 45990507 45990829 -98291660 - MER21A LTR ERV1 -7 924 622 713 217 13 13 chr12 45991260 45991412 -98291077 - MLT1C LTR MaLR 0 467 316 509 210 116 71 chr12 45991399 45991587 -98290902 - MLT1D LTR MaLR -361 144 5 * 354 143 0 0 chr12 45991903 45991966 -98290523 + (TA)n Simple_repeat Simple_repeat 1 63 0 1887 135 62 38 chr12 45991968 45992308 -98290181 - MER7A DNA MER2_type 0 346 1 1514 116 31 9 chr12 45992345 45992569 -98289920 - AluSg/x SINE Alu -13 299 71 28 0 0 0 chr12 45992621 45992649 -98289840 + AT_rich Low_complexity Low_complexity 1 28 0 212 317 53 66 chr12 45993292 45993495 -98288994 + MIR SINE MIR 11 212 -50 1379 215 44 67 chr12 45993643 45994079 -98288410 + MLT1E3 LTR MaLR 124 569 -55 2104 107 0 4 chr12 45994079 45994360 -98288129 + AluSx SINE Alu 1 280 -32 198 0 0 0 chr12 45994360 45994382 -98288107 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1379 215 44 67 chr12 45994382 45994443 -98288046 + MLT1E3 LTR MaLR 567 624 0 368 203 0 51 chr12 45994472 45994551 -98287938 - MLT1E1 LTR MaLR -539 115 41 2981 168 55 34 chr12 45994568 45994845 -98287644 + MSTB-int LTR MaLR 1042 1311 -340 2102 55 4 8 chr12 45994845 45995102 -98287387 - AluY SINE Alu -12 299 44 2981 168 55 34 chr12 45995102 45995421 -98287068 + MSTB-int LTR MaLR 1311 1651 0 1151 155 45 22 chr12 45995421 45995788 -98286701 + MSTB LTR MaLR 1 423 -3 366 237 311 0 chr12 45995857 45995992 -98286497 - MIR SINE MIR -74 188 12 230 276 164 15 chr12 45996036 45996170 -98286319 - MIR SINE MIR -12 250 97 1287 243 80 6 chr12 45996192 45996505 -98285984 + MLT1H LTR MaLR 24 359 -190 1516 193 20 20 chr12 45996582 45996878 -98285611 - AluJo SINE Alu -6 306 11 935 273 184 22 chr12 45998167 45998652 -98283837 - L2 LINE L2 0 3313 2746 204 296 204 19 chr12 45998738 45998846 -98283643 + MER5B DNA MER1_type 6 133 -45 2209 109 0 0 chr12 45998859 45999152 -98283337 + AluSc SINE Alu 1 293 -16 2171 36 66 0 chr12 45999307 45999581 -98282908 - AluY SINE Alu -19 292 1 482 219 272 6 chr12 46002413 46002582 -98279907 + MER58C DNA MER1_type 2 215 0 899 158 88 18 chr12 46002913 46002963 -98279526 + MER3 DNA MER1_type 1 62 -147 277 248 191 7 chr12 46002963 46003104 -98279385 - MER3 DNA MER1_type 0 209 43 2109 121 0 3 chr12 46007059 46007357 -98275132 - AluSq SINE Alu -16 297 1 40 37 0 0 chr12 46007747 46007801 -98274688 + AT_rich Low_complexity Low_complexity 1 54 0 1998 164 0 0 chr12 46008053 46008352 -98274137 + AluSx SINE Alu 1 299 -13 278 275 79 10 chr12 46009339 46009468 -98273021 + L1M3 LINE L1 5679 5817 -517 21 0 0 0 chr12 46010774 46010795 -98271694 + AT_rich Low_complexity Low_complexity 1 21 0 324 318 99 80 chr12 46012135 46012890 -98269599 + L1M2 LINE L1 490 1259 -5590 398 231 60 34 chr12 46014851 46014968 -98267521 - MER102b DNA MER1_type -4 337 218 983 140 41 23 chr12 46014970 46015141 -98267348 + AluJb SINE Alu 137 310 -2 330 270 40 46 chr12 46015141 46015293 -98267196 - MER102b DNA MER1_type -120 221 71 225 310 190 25 chr12 46015657 46015815 -98266674 + MIR SINE MIR 71 254 -8 189 289 19 19 chr12 46016789 46016841 -98265648 + MER5A DNA MER1_type 82 133 -56 1006 250 31 87 chr12 46017432 46017848 -98264641 + MLT1J LTR MaLR 100 492 -19 1612 149 30 34 chr12 46019029 46019324 -98263165 + AluJo SINE Alu 1 294 -18 680 237 31 70 chr12 46019773 46020012 -98262477 - MLT1J LTR MaLR -202 309 45 321 211 20 116 chr12 46020006 46020153 -98262336 + MER113 DNA MER1_type? 384 516 -5 * 1837 108 100 4 chr12 46020326 46020595 -98261894 - AluSg SINE Alu -15 295 1 206 204 45 0 chr12 46020919 46020963 -98261526 + CT-rich Low_complexity Low_complexity 3 48 0 187 143 29 0 chr12 46021666 46021701 -98260788 - L2 LINE L2 0 3272 3237 516 228 91 82 chr12 46021773 46021807 -98260682 + MIR SINE MIR 28 60 -202 2472 82 0 0 chr12 46021807 46022112 -98260377 - AluSq SINE Alu -8 305 1 516 228 91 82 chr12 46022112 46022309 -98260180 + MIR SINE MIR 60 261 -1 2380 81 0 16 chr12 46025501 46025810 -98256679 - AluSc SINE Alu -5 304 1 2214 88 7 10 chr12 46026560 46026857 -98255632 + AluSc SINE Alu 1 296 -13 255 170 0 0 chr12 46026866 46026913 -98255576 + GA-rich Low_complexity Low_complexity 4 50 0 2383 59 20 10 chr12 46028153 46028458 -98254031 + AluY SINE Alu 1 308 -3 1782 159 0 0 chr12 46028657 46028915 -98253574 - AluJb SINE Alu -54 258 1 285 309 36 55 chr12 46028990 46029100 -98253389 - MIR SINE MIR -83 125 18 21 36 0 0 chr12 46029804 46029832 -98252657 + AT_rich Low_complexity Low_complexity 1 28 0 914 174 0 30 chr12 46030083 46030250 -98252239 + AluJb SINE Alu 135 296 -16 494 244 124 34 chr12 46030514 46030723 -98251766 - MIR SINE MIR -31 231 4 2118 106 30 13 chr12 46030834 46031137 -98251352 - AluSc SINE Alu -1 308 1 209 233 0 0 chr12 46031376 46031419 -98251070 + (TTAA)n Simple_repeat Simple_repeat 4 46 0 2078 80 31 28 chr12 46031988 46032298 -98250191 + AluY SINE Alu 1 311 0 443 284 35 35 chr12 46032387 46032556 -98249933 - Charlie8 DNA MER1_type -2210 207 39 33 43 0 0 chr12 46032933 46032980 -98249509 + AT_rich Low_complexity Low_complexity 1 47 0 502 274 78 34 chr12 46033027 46033206 -98249283 - MER5A DNA MER1_type -2 187 1 213 315 116 7 chr12 46033217 46033363 -98249126 + L2 LINE L2 2221 2382 -932 361 133 17 0 chr12 46033603 46033663 -98248826 - MIR SINE MIR -13 249 189 412 339 35 11 chr12 46033951 46034125 -98248364 - MIR3 SINE MIR -6 202 25 248 296 0 25 chr12 46034149 46034230 -98248259 + L2 LINE L2 3201 3279 -34 503 271 100 17 chr12 46034473 46034713 -98247776 + L2 LINE L2 3016 3275 -38 1740 201 80 49 chr12 46035045 46035498 -98246991 + MLT1C LTR MaLR 1 467 0 201 344 0 0 chr12 46036165 46036229 -98246260 + CT-rich Low_complexity Low_complexity 2 65 0 791 181 0 36 chr12 46036282 46036420 -98246069 - FLAM_A SINE Alu 0 133 1 2376 84 0 0 chr12 46037142 46037441 -98245048 + AluSg SINE Alu 1 299 -11 2405 78 0 13 chr12 46037661 46037968 -98244521 + AluSg SINE Alu 1 303 -7 237 328 0 0 chr12 46038207 46038274 -98244215 - MIR SINE MIR -139 123 57 2216 115 0 3 chr12 46038881 46039177 -98243312 - AluSg SINE Alu -15 295 1 197 372 47 0 chr12 46039634 46039720 -98242769 - MIR SINE MIR -14 248 159 421 263 166 55 chr12 46040035 46040252 -98242237 + MIR SINE MIR 13 253 -9 1724 157 20 10 chr12 46040849 46041143 -98241346 + AluJo SINE Alu 3 299 -13 1974 159 0 0 chr12 46041145 46041435 -98241054 + AluJb SINE Alu 1 290 -22 325 325 50 0 chr12 46041709 46041789 -98240700 - L2 LINE L2 -48 3224 3141 354 262 0 0 chr12 46042711 46042833 -98239656 + (TG)n Simple_repeat Simple_repeat 1 122 0 300 281 77 82 chr12 46043050 46043427 -98239062 - L1M2 LINE L1 -5698 1151 777 201 121 0 0 chr12 46044116 46044149 -98238340 + (TG)n Simple_repeat Simple_repeat 1 33 0 2048 125 0 10 chr12 46044667 46044980 -98237509 - AluSg SINE Alu 0 310 1 21 0 0 0 chr12 46045047 46045068 -98237421 + AT_rich Low_complexity Low_complexity 1 21 0 200 182 0 0 chr12 46045583 46045616 -98236873 + (TG)n Simple_repeat Simple_repeat 1 33 0 197 135 27 0 chr12 46045944 46045981 -98236508 - L2 LINE L2 0 3313 3276 324 341 148 9 chr12 46046057 46046274 -98236215 + MIR SINE MIR 11 257 -5 897 295 130 28 chr12 46046391 46047139 -98235350 + L2 LINE L2 2482 3313 0 604 306 50 9 chr12 46047504 46047726 -98234763 + MIR SINE MIR 24 254 -8 338 325 159 0 chr12 46047943 46048069 -98234420 - L2 LINE L2 -6 3266 3121 326 346 108 0 chr12 46048616 46048793 -98233696 + MIR SINE MIR 9 204 -58 353 243 74 62 chr12 46049040 46049183 -98233306 + MIR SINE MIR 26 163 -45 208 275 156 28 chr12 46049885 46049994 -98232495 + MIR SINE MIR 23 145 -63 249 108 0 0 chr12 46050056 46050093 -98232396 + (CA)n Simple_repeat Simple_repeat 2 38 0 478 236 101 63 chr12 46050246 46050469 -98232020 + MIR SINE MIR 10 228 -34 1493 169 35 12 chr12 46051388 46051642 -98230847 + AluJb SINE Alu 1 260 -52 2259 121 0 0 chr12 46052513 46052818 -98229671 + AluSx SINE Alu 1 305 -7 23 33 0 0 chr12 46052852 46052882 -98229607 + AT_rich Low_complexity Low_complexity 1 30 0 2964 82 3 0 chr12 46052882 46053250 -98229239 - L1PA6 LINE L1 -5 6149 5781 414 288 197 5 chr12 46053859 46054057 -98228432 - L2 LINE L2 -4 3309 3074 248 292 104 54 chr12 46054732 46054972 -98227517 - L2 LINE L2 -1885 1429 1178 4319 65 17 41 chr12 46055152 46056219 -98226270 - MER11A LTR ERVK 0 1266 1 1104 163 74 5 chr12 46057351 46057554 -98224935 - LTR47A LTR ERVL 0 452 236 616 163 0 0 chr12 46057579 46057671 -98224818 - LTR47A LTR ERVL -358 94 3 349 346 55 37 chr12 46057681 46057993 -98224496 + L2 LINE L2 2765 3090 -182 294 29 0 0 chr12 46058195 46058230 -98224259 + (ATG)n Simple_repeat Simple_repeat 1 35 0 2221 101 3 10 chr12 46059351 46059484 -98223005 + AluSc SINE Alu 1 133 -176 2381 77 0 0 chr12 46059484 46059783 -98222706 + AluY SINE Alu 1 299 -12 2221 101 3 10 chr12 46059783 46059945 -98222544 + AluSc SINE Alu 133 294 -15 391 328 45 8 chr12 46060436 46060570 -98221919 + L2 LINE L2 3134 3272 0 2099 130 0 3 chr12 46060612 46060905 -98221584 - AluSc SINE Alu -17 292 1 2182 88 25 0 chr12 46061959 46062267 -98220222 - AluSx SINE Alu 0 315 1 876 220 173 47 chr12 46062267 46062567 -98219922 - MER46C DNA MER2_type 0 338 1 1023 76 0 0 chr12 46062586 46062717 -98219772 - AluSp/q SINE Alu -7 306 176 1154 211 101 15 chr12 46063816 46064143 -98218346 - L1ME2 LINE L1 -120 6044 5690 268 320 19 29 chr12 46065505 46065608 -98216881 - MIR SINE MIR -74 134 33 233 351 62 13 chr12 46066561 46066786 -98215703 - L2 LINE L2 -337 2977 2742 1372 71 0 6 chr12 46067357 46067539 -98214950 - L1PA7 LINE L1 -2 6152 5972 999 272 130 17 chr12 46067670 46068078 -98214411 - L2 LINE L2 -52 3261 2808 362 257 26 92 chr12 46069047 46069199 -98213290 - L2 LINE L2 0 3313 3172 770 271 90 49 chr12 46069200 46069504 -98212985 + MLT1I LTR MaLR 1 326 -83 1998 117 39 0 chr12 46069504 46069786 -98212703 - AluY SINE Alu -16 295 3 770 271 90 49 chr12 46069786 46069869 -98212620 + MLT1I LTR MaLR 326 404 -5 497 254 66 47 chr12 46069937 46070150 -98212339 - L2 LINE L2 -161 3152 2936 815 120 8 23 chr12 46070191 46070324 -98212165 + AluSg/x SINE Alu 174 304 -6 1395 106 219 4 chr12 46070344 46070581 -98211908 + AluSq SINE Alu 1 288 -25 237 33 0 0 chr12 46070591 46070621 -98211868 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 216 320 160 8 chr12 46070662 46070787 -98211702 - L2 LINE L2 -483 2831 2688 514 350 5 5 chr12 46070834 46071034 -98211455 + L1ME LINE L1 395 594 -5611 4839 104 90 43 chr12 46071043 46072525 -98209964 + pTR5 LTR ERV1 732 2435 -3 2259 132 0 0 chr12 46072749 46073059 -98209430 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr12 46073124 46073145 -98209344 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr12 46073189 46073219 -98209270 + AT_rich Low_complexity Low_complexity 1 30 0 414 277 43 3 chr12 46073240 46073439 -98209050 + L1ME LINE L1 602 985 -5357 700 250 56 4 chr12 46073442 46073674 -98208815 + L1ME LINE L1 1412 1655 -4741 1383 190 0 16 chr12 46073674 46073932 -98208557 + AluJb SINE Alu 50 303 -9 1573 248 79 88 chr12 46073932 46074148 -98208341 + L1ME LINE L1 1647 1864 -4351 2285 90 7 3 chr12 46074148 46074447 -98208042 + AluSp SINE Alu 6 305 -8 1573 248 79 88 chr12 46074447 46075432 -98207057 + L1ME LINE L1 1864 2857 -3358 183 42 0 0 chr12 46075432 46075456 -98207033 + (CA)n Simple_repeat Simple_repeat 2 25 0 1573 248 79 88 chr12 46075456 46075593 -98206896 + L1ME LINE L1 2857 2994 -3221 1879 117 7 40 chr12 46075593 46075893 -98206596 + AluSx SINE Alu 1 290 -22 1573 248 79 88 chr12 46075893 46076574 -98205915 + L1ME LINE L1 2994 3606 -2609 280 229 0 16 chr12 46076667 46076728 -98205761 - MIR SINE MIR -14 248 189 5256 81 7 77 chr12 46077082 46077592 -98204897 - L1PA11 LINE L1 -1 6173 5629 2294 93 7 0 chr12 46077592 46077893 -98204596 - AluSx SINE Alu -9 303 1 5256 81 7 77 chr12 46077893 46078121 -98204368 - L1PA11 LINE L1 -545 5629 5387 2203 111 0 0 chr12 46078121 46078419 -98204070 - AluSq SINE Alu -15 298 1 2362 97 0 3 chr12 46078428 46078736 -98203753 - AluSx SINE Alu -3 309 3 5256 81 7 77 chr12 46078736 46078900 -98203589 - L1PA11 LINE L1 -795 5379 5325 997 194 0 40 chr12 46079292 46079493 -98202996 - AluJo SINE Alu -76 236 44 182 91 30 0 chr12 46081035 46081068 -98201421 + T-rich Low_complexity Low_complexity 2 35 0 2188 108 0 32 chr12 46081633 46081947 -98200542 + AluSq SINE Alu 1 304 -9 279 0 0 0 chr12 46082555 46082586 -98199903 + (TG)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr12 46082740 46082763 -98199726 + AT_rich Low_complexity Low_complexity 1 23 0 278 232 54 0 chr12 46084058 46084114 -98198375 + L2 LINE L2 3211 3269 -3 355 280 58 37 chr12 46084334 46084577 -98197912 - L1ME LINE L1 -303 5818 5571 425 298 140 34 chr12 46084594 46084685 -98197804 + L1MC4a LINE L1 5573 5653 -468 2242 107 0 3 chr12 46084685 46084984 -98197505 + AluSx SINE Alu 1 298 -14 425 298 140 34 chr12 46084984 46085224 -98197265 + L1MC4a LINE L1 5653 5892 -229 354 23 0 0 chr12 46085224 46085267 -98197222 + (CA)n Simple_repeat Simple_repeat 2 44 0 425 298 140 34 chr12 46085267 46085314 -98197175 + L1MC4a LINE L1 5892 5933 -188 208 287 58 58 chr12 46087432 46087519 -98194970 + MIR SINE MIR 106 192 -70 534 176 22 131 chr12 46088712 46088841 -98193648 + Charlie5 DNA MER1_type 2426 2567 -57 2312 98 3 3 chr12 46088841 46089146 -98193343 + AluSp SINE Alu 3 307 -6 2125 74 78 0 chr12 46089146 46089429 -98193060 + AluY SINE Alu 1 305 -6 534 176 22 131 chr12 46089429 46089520 -98192969 + Charlie5 DNA MER1_type 2565 2623 -1 2048 105 0 0 chr12 46089550 46089817 -98192672 + AluSq SINE Alu 40 306 -7 186 71 0 0 chr12 46091097 46091125 -98191364 + (A)n Simple_repeat Simple_repeat 1 28 0 1977 160 10 0 chr12 46091190 46091497 -98190992 + AluJb SINE Alu 1 310 -2 22 35 0 0 chr12 46091663 46091692 -98190797 + AT_rich Low_complexity Low_complexity 1 29 0 2643 106 53 25 chr12 46092002 46092436 -98190053 + MER83 LTR ERV1 3 448 0 204 125 0 0 chr12 46092734 46092766 -98189723 + (T)n Simple_repeat Simple_repeat 1 32 0 233 285 154 0 chr12 46092826 46092956 -98189533 - L1ME4a LINE L1 -30 6091 5942 328 338 15 29 chr12 46093122 46093258 -98189231 - L2 LINE L2 -188 3084 2951 532 300 179 14 chr12 46093513 46093943 -98188546 - L2 LINE L2 -1116 2198 1698 1449 108 23 0 chr12 46093961 46094175 -98188314 - L1PA12 LINE L1 0 6168 5950 1895 154 0 3 chr12 46094186 46094484 -98188005 - AluSx SINE Alu -15 297 1 526 302 95 29 chr12 46095391 46095633 -98186856 + MIR SINE MIR 5 262 0 374 206 191 28 chr12 46095833 46095874 -98186615 - MIR SINE MIR -11 251 218 2535 65 0 7 chr12 46095874 46096184 -98186305 - AluY SINE Alu -3 308 1 374 206 191 28 chr12 46096184 46096283 -98186206 - MIR SINE MIR -44 218 88 1981 140 18 38 chr12 46096292 46096419 -98186070 - MER1B DNA MER1_type -2373 337 209 2359 103 0 0 chr12 46096419 46096719 -98185770 - AluSq SINE Alu -13 300 1 1981 140 18 38 chr12 46096719 46096933 -98185556 - MER1B DNA MER1_type -2501 209 3 656 234 86 23 chr12 46097146 46097451 -98185038 - LTR16A LTR ERVL -12 438 19 21 36 0 0 chr12 46097559 46097587 -98184902 + AT_rich Low_complexity Low_complexity 1 28 0 2391 88 3 0 chr12 46097859 46098166 -98184323 - AluSg SINE Alu -2 308 1 557 235 0 9 chr12 46098519 46098634 -98183855 - L2 LINE L2 -7 3306 3193 2407 77 20 0 chr12 46098704 46099002 -98183487 - AluY SINE Alu -7 304 1 214 262 167 48 chr12 46099258 46099342 -98183147 + L2 LINE L2 2550 2643 -671 3105 187 11 4 chr12 46099394 46099951 -98182538 - MER68 LTR ERV1 -1 561 1 1332 268 103 32 chr12 46100000 46100701 -98181788 - L2 LINE L2 -8 3305 2554 392 264 77 76 chr12 46101064 46101554 -98180935 - MLT1H1 LTR MaLR 0 555 3 2754 111 32 9 chr12 46101725 46102167 -98180322 - L1PA12 LINE L1 0 6168 5717 3203 116 2 10 chr12 46102328 46102830 -98179659 - L1PA13 LINE L1 -4 6159 5662 1370 138 12 21 chr12 46103249 46103489 -98179000 - MLT2A2 LTR ERVL -215 238 1 284 359 43 0 chr12 46103506 46103623 -98178866 - L2 LINE L2 -13 3259 3138 206 371 22 0 chr12 46103655 46103744 -98178745 + L2 LINE L2 2968 3058 -214 2216 106 0 13 chr12 46104646 46104947 -98177542 - AluSc SINE Alu -10 299 3 1755 149 3 26 chr12 46104949 46105251 -98177238 - AluSx SINE Alu -17 295 1 402 115 0 0 chr12 46105349 46105410 -98177079 + (CA)n Simple_repeat Simple_repeat 1 61 0 260 207 17 0 chr12 46105454 46105512 -98176977 + L2 LINE L2 2320 2378 -936 58 0 0 0 chr12 46105691 46105749 -98176740 + AT_rich Low_complexity Low_complexity 1 58 0 190 311 40 0 chr12 46107031 46107105 -98175384 - MIR SINE MIR -7 255 179 201 232 224 16 chr12 46107136 46107229 -98175260 + MIR SINE MIR 8 116 -92 2361 99 0 0 chr12 46107777 46108071 -98174418 + AluSg SINE Alu 1 294 -16 251 275 29 0 chr12 46108160 46108229 -98174260 + A-rich Low_complexity Low_complexity 5 75 0 559 274 82 34 chr12 46108306 46108598 -98173891 - L1ME LINE L1 -314 5807 5502 2270 109 3 3 chr12 46108639 46108950 -98173539 - AluSx SINE Alu -1 311 1 222 338 120 14 chr12 46109690 46109974 -98172515 + L3 LINE CR1 549 862 -715 900 177 6 12 chr12 46111278 46111442 -98171047 + FRAM SINE Alu 1 163 -3 22 70 0 0 chr12 46111463 46111506 -98170983 + AT_rich Low_complexity Low_complexity 1 43 0 2322 84 7 0 chr12 46111909 46112205 -98170284 + AluSp SINE Alu 1 298 -15 202 61 61 0 chr12 46112548 46112581 -98169908 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2081 140 0 0 chr12 46113233 46113526 -98168963 + AluSx SINE Alu 7 299 -13 29750 37 14 2 chr12 46113528 46119551 -98162938 + L1PA3 LINE L1 1 6150 -5 261 0 0 0 chr12 46119553 46119582 -98162907 + (TA)n Simple_repeat Simple_repeat 1 29 0 633 198 0 8 chr12 46119585 46119706 -98162783 + L2 LINE L2 3193 3312 -1 339 270 126 28 chr12 46119831 46120046 -98162443 + MARNA DNA Mariner 207 442 -144 494 195 80 18 chr12 46121592 46121705 -98160784 - L2 LINE L2 -4 3268 3149 273 188 35 12 chr12 46122845 46122930 -98159559 + GA-rich Low_complexity Low_complexity 2 88 0 24 0 0 0 chr12 46122992 46123016 -98159473 + AT_rich Low_complexity Low_complexity 1 24 0 242 261 70 9 chr12 46123431 46123546 -98158943 - L1ME4a LINE L1 -11 6110 5989 1231 177 0 35 chr12 46124263 46124495 -98157994 + AluJo SINE Alu 1 224 -88 730 287 63 5 chr12 46124536 46124759 -98157730 - MIR SINE MIR -18 244 9 214 218 26 51 chr12 46124936 46125014 -98157475 - MIR3 SINE MIR 0 208 133 3713 153 36 24 chr12 46126283 46127029 -98155460 - L1MB1 LINE L1 -1 6167 5413 1998 85 67 0 chr12 46127396 46127666 -98154823 + AluY SINE Alu 1 288 -23 1021 131 24 24 chr12 46127702 46127870 -98154619 - FRAM SINE Alu -9 167 1 518 305 7 14 chr12 46128523 46128664 -98153825 + MIR3 SINE MIR 8 147 -61 287 294 105 20 chr12 46128836 46128989 -98153500 + L2 LINE L2 3148 3313 0 243 157 0 0 chr12 46129316 46129367 -98153122 + CT-rich Low_complexity Low_complexity 2 52 0 182 79 0 79 chr12 46129982 46130020 -98152469 + (GGGAGA)n Simple_repeat Simple_repeat 1 35 0 662 278 72 14 chr12 46130675 46130884 -98151605 + MIR SINE MIR 41 261 -1 25 0 0 0 chr12 46131716 46131741 -98150748 + AT_rich Low_complexity Low_complexity 1 25 0 2169 74 3 52 chr12 46132314 46132623 -98149866 + AluY SINE Alu 1 294 -17 40 0 0 0 chr12 46132837 46132877 -98149612 + AT_rich Low_complexity Low_complexity 1 40 0 1096 266 83 18 chr12 46133653 46134037 -98148452 - MLT1I LTR MaLR 0 409 1 3057 111 7 9 chr12 46135415 46135873 -98146616 - L1PA16 LINE L1 0 6166 5710 1520 234 76 99 chr12 46136651 46136798 -98145691 + MLT1F1 LTR MaLR 1 150 -417 1732 181 20 3 chr12 46136798 46137097 -98145392 - AluJb SINE Alu -8 304 1 1520 234 76 99 chr12 46137097 46137504 -98144985 + MLT1F1 LTR MaLR 150 567 0 1895 127 7 7 chr12 46138913 46139196 -98143293 + AluSc SINE Alu 1 283 -26 309 319 98 48 chr12 46139680 46140137 -98142352 - L2 LINE L2 -1656 1658 1179 292 377 66 0 chr12 46140461 46140583 -98141906 - L2 LINE L2 -4 3268 3139 1629 159 37 9 chr12 46140621 46140947 -98141542 - LTR35 LTR ERV1 0 618 284 191 69 86 17 chr12 46140950 46141008 -98141481 + (TTATA)n Simple_repeat Simple_repeat 3 64 0 243 333 27 0 chr12 46141237 46141348 -98141141 + MLT1K LTR MaLR 366 479 -109 2286 109 3 3 chr12 46141431 46141743 -98140746 + AluSx SINE Alu 1 312 0 2251 119 18 6 chr12 46142470 46142807 -98139682 - THE1B LTR MaLR 0 364 24 2358 88 0 7 chr12 46143261 46143557 -98138932 - AluSq SINE Alu -19 294 1 526 195 24 8 chr12 46144065 46144188 -98138301 + MER94 DNA DNA 10 134 0 475 232 10 0 chr12 46144909 46145008 -98137481 + L2 LINE L2 3214 3313 0 21 0 0 0 chr12 46145069 46145090 -98137399 + AT_rich Low_complexity Low_complexity 1 21 0 2291 96 0 7 chr12 46145615 46145918 -98136571 + AluSc SINE Alu 5 305 -4 2102 119 4 0 chr12 46147547 46147857 -98134632 + AluSc SINE Alu 1 311 0 195 285 105 64 chr12 46148602 46148774 -98133715 + L2 LINE L2 1892 2070 -1244 1404 234 41 8 chr12 46148782 46149145 -98133344 + MER44D DNA MER2_type 2 431 -174 2027 124 0 13 chr12 46149145 46149459 -98133030 - AluSx SINE Alu -2 310 1 186 71 0 0 chr12 46150215 46150243 -98132246 + (T)n Simple_repeat Simple_repeat 1 28 0 364 266 32 0 chr12 46150409 46150503 -98131986 - MIR SINE MIR -60 202 106 1856 185 3 7 chr12 46150889 46151197 -98131292 + AluJo SINE Alu 1 307 -5 2198 72 0 0 chr12 46152143 46152406 -98130083 - AluY SINE Alu -12 299 37 568 277 71 49 chr12 46152548 46152815 -98129674 + L1MEd LINE L1 18 290 -5829 3992 158 30 6 chr12 46152897 46153605 -98128884 - MER50 LTR ERV1 -9 725 1 1859 99 166 84 chr12 46153983 46154387 -98128102 - LTR23 LTR ERV1 0 437 1 1004 108 38 0 chr12 46154405 46154562 -98127927 + MER50 LTR ERV1 100 262 -472 23824 154 22 19 chr12 46154695 46155916 -98126573 + L1PA10 LINE L1 10 1225 -5258 201 74 0 0 chr12 46155916 46155943 -98126546 + (CAA)n Simple_repeat Simple_repeat 1 27 0 23824 154 22 19 chr12 46155943 46161153 -98121336 + L1PA10 LINE L1 1225 6473 -10 2360 42 0 3 chr12 46162629 46162945 -98119544 - AluY SINE Alu 0 315 1 30 27 0 0 chr12 46163872 46163909 -98118580 + AT_rich Low_complexity Low_complexity 1 37 0 266 342 32 25 chr12 46164571 46164729 -98117760 - MER117 DNA MER1_type -34 163 5 548 172 8 25 chr12 46164886 46165008 -98117481 - L1PB4 LINE L1 0 6156 6037 226 218 23 23 chr12 46165941 46166028 -98116461 + L1ME LINE L1 5347 5433 -688 1821 166 5 29 chr12 46166307 46166681 -98115808 - MLT1B LTR MaLR -19 371 7 824 262 73 34 chr12 46166721 46167303 -98115186 + L1MEd LINE L1 895 1556 -4754 319 290 50 10 chr12 46167320 46167420 -98115069 + L1ME4a LINE L1 5985 6088 -33 393 22 0 0 chr12 46169251 46169297 -98113192 + (TTG)n Simple_repeat Simple_repeat 2 47 0 2072 122 0 0 chr12 46169297 46169576 -98112913 - AluSx SINE Alu -33 279 1 267 205 418 16 chr12 46169846 46169968 -98112521 + MIR SINE MIR 75 245 -17 420 20 0 0 chr12 46170065 46170114 -98112375 + (CA)n Simple_repeat Simple_repeat 1 49 0 271 253 11 58 chr12 46170227 46170314 -98112175 - MIR SINE MIR -149 113 31 239 330 0 22 chr12 46170337 46170428 -98112061 + MIR SINE MIR 122 210 -52 381 319 217 6 chr12 46170692 46171005 -98111484 + L3 LINE CR1 683 1061 -516 1613 188 56 12 chr12 46171008 46171476 -98111013 - LTR22 LTR ERVK 0 458 1 18849 92 12 4 chr12 46171476 46174306 -98108183 - HERVK22 LTR ERVK 0 6837 2665 4660 21 9 0 chr12 46174456 46175031 -98107458 - L1PA3 LINE L1 -47 6108 5529 494 296 104 19 chr12 46175034 46175304 -98107185 - L1MEc LINE L1 -4180 2216 1924 500 198 9 9 chr12 46175324 46175440 -98107049 - L1MA10 LINE L1 -8 6326 6211 368 345 41 72 chr12 46175990 46176433 -98106056 - L1MEc LINE L1 -5552 653 225 * 393 290 113 16 chr12 46176428 46176614 -98105875 - L1MEc LINE L1 -4758 1638 1435 2370 251 52 7 chr12 46176623 46177369 -98105120 + L1MEc LINE L1 196 975 -5421 297 333 34 10 chr12 46177404 46177611 -98104878 - L1MEc LINE L1 -5302 903 692 37 23 0 0 chr12 46178060 46178104 -98104385 + AT_rich Low_complexity Low_complexity 1 44 0 294 365 0 9 chr12 46178368 46178475 -98104014 + MIR3 SINE MIR 58 163 -45 1914 215 53 34 chr12 46181466 46181992 -98100497 - MLT1F LTR MaLR -6 536 1 21 0 0 0 chr12 46181998 46182019 -98100470 + AT_rich Low_complexity Low_complexity 1 21 0 287 296 34 34 chr12 46183259 46183465 -98099024 - L1MDa LINE L1 -2549 3991 3786 667 264 89 62 chr12 46183491 46184592 -98097897 - L1MDa LINE L1 -2846 3694 2564 350 274 31 76 chr12 46184603 46184826 -98097663 - L1MDa LINE L1 -4007 2533 2321 30 0 0 0 chr12 46184983 46185013 -98097476 + AT_rich Low_complexity Low_complexity 1 30 0 1957 161 5 21 chr12 46185830 46186216 -98096273 - L1MA6 LINE L1 -4 6296 5917 939 321 68 24 chr12 46186331 46186714 -98095775 - L3 LINE CR1 -11 1566 1167 1742 185 51 12 chr12 46186819 46187289 -98095200 + LTR22 LTR ERVK 1 458 0 5018 119 8 9 chr12 46187289 46188076 -98094413 + HERVK22 LTR ERVK 1 786 -6051 1519 228 31 22 chr12 46188069 46188612 -98093877 + HERVK22 LTR ERVK 2314 2861 -3976 * 4326 84 12 65 chr12 46189052 46189775 -98092714 + HUERS-P3b LTR ERV1 3057 3741 -3677 248 231 0 0 chr12 46189775 46189827 -98092662 + LTR30 LTR ERV1 1 52 -670 1409 141 18 49 chr12 46189827 46190170 -98092319 + LTR12 LTR ERV1 55 2032 -406 310 233 11 0 chr12 46190170 46190260 -98092229 + LTR30 LTR ERV1 552 642 -80 712 100 0 0 chr12 46190263 46190363 -98092126 + LTR12 LTR ERV1 615 714 0 2019 100 55 7 chr12 46190363 46190672 -98091817 + HUERS-P1 LTR ERV1 2592 2915 -3348 1601 134 4 0 chr12 46190672 46190926 -98091563 + L1MB1 LINE L1 5912 6166 -2 365 367 55 37 chr12 46190953 46191280 -98091209 - L2 LINE L2 -122 3150 2818 1864 183 0 0 chr12 46191934 46192240 -98090249 - AluJb SINE Alu -4 308 3 388 288 96 79 chr12 46193086 46193241 -98089248 - MIR SINE MIR -10 252 90 1799 145 60 0 chr12 46193241 46193523 -98088966 + AluSc SINE Alu 1 299 -10 388 288 96 79 chr12 46193523 46193596 -98088893 - MIR SINE MIR -172 90 20 1036 101 13 0 chr12 46193784 46193933 -98088556 - L1PB1 LINE L1 -2 6149 5999 330 270 61 14 chr12 46194343 46194491 -98087998 - L1ME4a LINE L1 -8 6113 5959 1281 149 37 9 chr12 46195694 46195909 -98086580 - AluJb SINE Alu -5 307 87 801 191 33 49 chr12 46196553 46196736 -98085753 + AluJb SINE Alu 107 286 -26 321 353 53 32 chr12 46196790 46196839 -98085650 - L2 LINE L2 -556 2758 2712 1671 126 0 48 chr12 46196839 46197108 -98085381 - AluJb SINE Alu -19 293 38 321 353 53 32 chr12 46197108 46197248 -98085241 - L2 LINE L2 -602 2712 2565 219 125 0 0 chr12 46197273 46197313 -98085176 + (TC)n Simple_repeat Simple_repeat 1 40 0 433 212 199 33 chr12 46197328 46197479 -98085010 - MIR SINE MIR 0 262 87 421 32 32 16 chr12 46197522 46197585 -98084904 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 384 378 7 7 chr12 46197647 46197790 -98084699 + L3 LINE CR1 1434 1576 -1 377 299 76 5 chr12 46198982 46199179 -98083310 + Charlie2 DNA MER1_type 1 211 -2571 229 291 38 19 chr12 46199320 46199478 -98083011 + Charlie2 DNA MER1_type 1923 2083 -779 431 233 35 0 chr12 46200203 46200319 -98082170 + MLT1H1 LTR MaLR 419 538 -17 225 349 0 0 chr12 46200505 46200548 -98081941 + C-rich Low_complexity Low_complexity 1 43 0 407 250 11 28 chr12 46200548 46200728 -98081761 + CT-rich Low_complexity Low_complexity 1 177 0 188 312 11 0 chr12 46200707 46200800 -98081689 + C-rich Low_complexity Low_complexity 5 98 0 * 235 333 176 9 chr12 46201417 46201525 -98080964 - MIR SINE MIR -125 137 12 504 252 12 79 chr12 46202111 46202277 -98080212 - MIR SINE MIR -60 148 1 849 216 25 4 chr12 46202610 46202846 -98079643 - L1MEc LINE L1 -3962 2434 2194 905 248 108 13 chr12 46202858 46203477 -98079012 + L1ME4a LINE L1 4967 5641 -521 333 248 104 8 chr12 46203481 46203606 -98078883 + L1ME3A LINE L1 6029 6165 -5 966 246 145 16 chr12 46203615 46203792 -98078697 - Charlie2 DNA MER1_type -423 2439 2286 1568 153 10 49 chr12 46203792 46204099 -98078390 - AluJb SINE Alu -17 295 1 966 246 145 16 chr12 46204099 46204418 -98078071 - Charlie2 DNA MER1_type -576 2286 1879 466 270 157 4 chr12 46204440 46204714 -98077775 - Charlie2 DNA MER1_type -2546 316 1 588 255 50 0 chr12 46205670 46205811 -98076678 + MER5A DNA MER1_type 2 149 -40 385 256 83 8 chr12 46209353 46209474 -98073015 - MIR SINE MIR -10 252 123 2242 131 8 32 chr12 46209992 46210365 -98072124 + THE1B LTR MaLR 1 364 0 268 328 15 0 chr12 46211058 46211125 -98071364 - L2 LINE L2 -20 3252 3185 2333 151 62 36 chr12 46211278 46211827 -98070662 - L1MCa LINE L1 -4181 2245 1590 451 222 11 0 chr12 46211832 46211922 -98070567 - Tigger7 DNA MER2_type 0 2487 2397 2473 105 5 27 chr12 46211922 46212292 -98070197 + THE1B LTR MaLR 1 362 -2 228 255 20 0 chr12 46212740 46212791 -98069698 - L2 LINE L2 -36 3236 3185 23074 22 1 1 chr12 46215048 46218337 -98064152 - L1P1 LINE L1 -673 5482 2193 991 221 77 18 chr12 46218422 46218694 -98063795 + L1MA9 LINE L1 6001 6288 -24 310 241 161 6 chr12 46218853 46219015 -98063474 + L1ME4a LINE L1 5687 5873 -248 2165 116 3 3 chr12 46219189 46219492 -98062997 - AluSx SINE Alu -9 303 1 2046 134 0 6 chr12 46219530 46219844 -98062645 - AluSq SINE Alu 0 313 2 3196 150 75 11 chr12 46221278 46221947 -98060542 - L1MDa LINE L1 -4045 2381 1706 1998 217 46 48 chr12 46221952 46222042 -98060447 - MER44D DNA MER2_type -1882 605 516 1796 147 75 26 chr12 46222042 46222389 -98060100 + THE1B LTR MaLR 1 364 0 1998 217 46 48 chr12 46222389 46222841 -98059648 - MER44D DNA MER2_type -1971 516 9 7429 171 40 35 chr12 46222847 46223753 -98058736 - L1MDa LINE L1 -4841 1585 668 1743 155 9 29 chr12 46223753 46224069 -98058420 - AluJb SINE Alu 0 312 3 7429 171 40 35 chr12 46224069 46224720 -98057769 - L1MDa LINE L1 -5758 668 21 468 167 71 0 chr12 46225203 46225287 -98057202 - MER5A DNA MER1_type -99 90 1 225 261 246 23 chr12 46227550 46227680 -98054809 - MER5A DNA MER1_type -15 174 16 225 154 0 0 chr12 46228051 46228090 -98054399 + T-rich Low_complexity Low_complexity 1 39 0 2107 113 55 0 chr12 46229453 46229746 -98052743 - AluSc SINE Alu 0 309 1 199 425 25 8 chr12 46230136 46230256 -98052233 - MIR3 SINE MIR -72 136 15 219 211 0 0 chr12 46230267 46230305 -98052184 + polypyrimidine Low_complexity Low_complexity 3 40 0 23 0 0 0 chr12 46230818 46230841 -98051648 + AT_rich Low_complexity Low_complexity 1 23 0 2121 97 7 13 chr12 46231863 46232173 -98050316 - L1PA14 LINE L1 -14 6147 5840 1636 204 78 52 chr12 46232180 46232704 -98049785 + LTR55 LTR ERV 1 538 -10 350 254 218 0 chr12 46232905 46233015 -98049474 + MIR SINE MIR 28 161 -101 262 321 24 0 chr12 46233149 46233233 -98049256 + MIR SINE MIR 106 191 -71 5283 22 0 0 chr12 46233848 46234504 -98047985 - L1PA4 LINE L1 -280 5875 5220 1372 73 29 10 chr12 46234509 46234715 -98047774 + L1PA4 LINE L1 5944 6153 -2 353 206 10 0 chr12 46235288 46235390 -98047099 + GA-rich Low_complexity Low_complexity 3 105 0 243 327 0 0 chr12 46235532 46235633 -98046856 + L1MC4 LINE L1 6602 6702 -1340 410 281 62 0 chr12 46235794 46235924 -98046565 + MIR SINE MIR 75 211 -51 314 322 77 38 chr12 46237105 46237366 -98045123 + L2 LINE L2 2922 3192 -121 1008 253 154 49 chr12 46237444 46237827 -98044662 - L1MC4 LINE L1 -2 8040 7699 862 9 45 0 chr12 46237827 46237939 -98044550 + (TTTTA)n Simple_repeat Simple_repeat 1 117 0 1866 141 44 0 chr12 46237943 46238213 -98044276 - AluSx SINE Alu -30 282 1 1008 253 154 49 chr12 46238213 46238413 -98044076 - L1MC4 LINE L1 -345 7697 7390 2213 71 43 0 chr12 46238663 46238943 -98043546 + AluY SINE Alu 1 292 -19 4073 86 16 0 chr12 46239073 46239618 -98042871 + MER41A LTR ERV1 1 554 0 3460 127 36 91 chr12 46239704 46240365 -98042124 + MER41A-int LTR ERV1 1 625 -5321 * 6370 96 33 30 chr12 46240352 46241387 -98041102 + MER41A-int LTR ERV1 1081 2112 -2903 746 119 103 0 chr12 46241387 46241513 -98040976 - MER85 DNA T2_type 0 139 1 6370 96 33 30 chr12 46241513 46242160 -98040329 + MER41A-int LTR ERV1 2112 3611 -1404 2839 73 11 3 chr12 46242295 46242665 -98039824 - THE1C LTR MaLR -2 373 1 1598 189 14 59 chr12 46242738 46243092 -98039397 + MER58B DNA MER1_type 4 341 0 37 23 0 0 chr12 46244140 46244184 -98038305 + AT_rich Low_complexity Low_complexity 1 44 0 228 200 0 0 chr12 46245021 46245071 -98037418 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 899 236 48 128 chr12 46245126 46245538 -98036951 - L1ME3A LINE L1 -315 5855 5508 1781 166 0 22 chr12 46245538 46245852 -98036637 - AluJb SINE Alu -5 307 1 899 236 48 128 chr12 46245852 46246063 -98036426 - L1ME3A LINE L1 -662 5508 5282 26 50 0 0 chr12 46246582 46246622 -98035867 + AT_rich Low_complexity Low_complexity 1 40 0 181 213 410 0 chr12 46247131 46247192 -98035297 + MIR SINE MIR 167 252 -10 258 204 136 34 chr12 46247385 46247473 -98035016 + L2 LINE L2 3212 3308 -5 2105 110 3 13 chr12 46248363 46248663 -98033826 - AluSc SINE Alu -12 297 1 228 83 124 41 chr12 46249080 46249201 -98033288 + (TATAA)n Simple_repeat Simple_repeat 1 131 0 402 21 0 0 chr12 46249577 46249624 -98032865 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1523 198 0 14 chr12 46249625 46249913 -98032576 - AluJb SINE Alu -28 284 1 410 152 0 0 chr12 46250067 46250133 -98032356 - Charlie1 DNA MER1_type -1 2760 2695 * 909 242 48 8 chr12 46250125 46250373 -98032116 - Charlie1 DNA MER1_type -2503 258 1 691 201 82 0 chr12 46251902 46252061 -98030428 - MER58B DNA MER1_type -1 340 169 850 193 96 0 chr12 46252327 46252514 -98029975 - L1PA16 LINE L1 -3 6163 5959 1987 129 0 11 chr12 46252547 46252888 -98029601 - AluSx SINE Alu 0 338 1 201 39 0 0 chr12 46252988 46253014 -98029475 + (T)n Simple_repeat Simple_repeat 1 26 0 2417 69 69 6 chr12 46253167 46253499 -98028990 - THE1A LTR MaLR -2 353 1 184 289 0 0 chr12 46256991 46257029 -98025460 - L2 LINE L2 -25 3247 3210 11371 31 4 1 chr12 46257908 46260035 -98022454 + L1PA4 LINE L1 4033 6167 0 407 220 128 28 chr12 46260304 46260413 -98022076 - L2 LINE L2 0 3272 3153 29 0 0 0 chr12 46261403 46261432 -98021057 + AT_rich Low_complexity Low_complexity 1 29 0 1701 180 47 12 chr12 46263031 46263353 -98019136 - MLT1A1 LTR MaLR 0 365 33 540 311 145 15 chr12 46264173 46264504 -98017985 + L3b LINE CR1 1112 1485 -98 323 311 8 8 chr12 46264591 46264723 -98017766 + CT-rich Low_complexity Low_complexity 1 132 0 2905 72 5 3 chr12 46264887 46265261 -98017228 + THE1C LTR MaLR 1 375 0 205 293 0 17 chr12 46266417 46266475 -98016014 + CT-rich Low_complexity Low_complexity 4 60 0 242 267 69 69 chr12 46266582 46266698 -98015791 - MIR SINE MIR -10 252 137 7925 175 63 16 chr12 46266707 46268400 -98014089 - L1MCa LINE L1 -4595 2012 48 22 0 0 0 chr12 46268438 46268460 -98014029 + AT_rich Low_complexity Low_complexity 1 22 0 180 264 42 69 chr12 46268460 46268510 -98013979 - MIR SINE MIR -111 151 82 591 161 21 6 chr12 46268653 46268818 -98013671 + L1MA7 LINE L1 6011 6291 0 548 312 55 21 chr12 46269212 46269449 -98013040 - MIR SINE MIR 0 262 18 29 0 0 0 chr12 46270327 46270356 -98012133 + AT_rich Low_complexity Low_complexity 1 29 0 9770 113 23 0 chr12 46270561 46272094 -98010395 + MER41A-int LTR ERV1 4377 5944 -2 3870 105 9 9 chr12 46272094 46272647 -98009842 + MER41A LTR ERV1 1 553 -1 295 242 222 0 chr12 46272707 46272806 -98009683 - MIR3 SINE MIR -5 203 83 395 197 88 36 chr12 46273379 46273516 -98008973 + L1MEd LINE L1 42 185 -5934 1003 218 53 35 chr12 46273939 46274168 -98008321 + MLT2B1 LTR ERVL 13 236 -284 180 0 0 0 chr12 46274168 46274188 -98008301 + (CATCT)n Simple_repeat Simple_repeat 1 20 0 1003 218 53 35 chr12 46274188 46274411 -98008078 + MLT2B1 LTR ERVL 236 520 0 200 267 22 0 chr12 46274460 46274505 -98007984 + MIR3 SINE MIR 117 162 -46 319 294 140 7 chr12 46274534 46274670 -98007819 - L2 LINE L2 0 3313 3160 667 292 111 17 chr12 46275692 46276161 -98006328 - L1ME3A LINE L1 -281 5872 5338 7230 164 106 87 chr12 46276161 46277883 -98004606 + MER52A LTR ERV1 1 1755 0 667 292 111 17 chr12 46277883 46277991 -98004498 - L1ME3A LINE L1 -815 5338 5241 301 165 158 101 chr12 46278041 46278199 -98004290 - L1MC5 LINE L1 -53 7908 7742 365 254 61 6 chr12 46278199 46278380 -98004109 - L1ME3A LINE L1 -934 5195 5005 28 91 0 0 chr12 46278530 46278607 -98003882 + AT_rich Low_complexity Low_complexity 1 77 0 324 239 116 0 chr12 46278613 46278751 -98003738 - L1ME3A LINE L1 -1427 4702 4549 238 189 38 38 chr12 46279071 46279124 -98003365 + L2 LINE L2 3255 3307 -6 1059 206 19 25 chr12 46279177 46279561 -98002928 + MER63B DNA MER1_type 3 434 0 516 306 70 23 chr12 46279639 46280067 -98002422 - L1ME3A LINE L1 -1809 4320 3873 333 309 55 25 chr12 46280192 46280278 -98002211 + L1M4 LINE L1 2596 2678 -3468 1762 41 5 0 chr12 46280278 46280497 -98001992 - L1PA4 LINE L1 0 6155 5936 333 309 55 25 chr12 46280497 46280611 -98001878 + L1M4 LINE L1 2678 2802 -3344 683 191 54 7 chr12 46280658 46280805 -98001684 - L1PA15 LINE L1 -4 6161 6008 1934 188 243 7 chr12 46280807 46281350 -98001139 + L1P LINE L1 3643 4313 -1833 386 277 42 8 chr12 46281356 46281475 -98001014 - L1ME3A LINE L1 -5100 1019 897 31 58 0 0 chr12 46281505 46281557 -98000932 + AT_rich Low_complexity Low_complexity 1 52 0 2965 72 70 5 chr12 46281567 46281944 -98000545 + MLT2A1 LTR ERVL 1 409 -35 306 0 0 0 chr12 46281944 46281978 -98000511 + (CA)n Simple_repeat Simple_repeat 2 35 0 2965 72 70 5 chr12 46281978 46282015 -98000474 + MLT2A1 LTR ERVL 409 442 -2 9948 74 27 1 chr12 46282017 46283389 -97999100 + HERVL-A1 LTR ERVL 1 1407 -4247 * 17912 72 11 25 chr12 46283376 46284730 -97997759 + HERVL-A1 LTR ERVL 3162 4466 -1188 2003 109 0 4 chr12 46284730 46285005 -97997484 + AluSg SINE Alu 1 274 -36 17912 72 11 25 chr12 46285005 46286178 -97996311 + HERVL-A1 LTR ERVL 4466 5654 0 692 105 0 0 chr12 46286178 46286283 -97996206 + MLT2A1 LTR ERVL 1 105 -339 261 148 0 19 chr12 46286302 46286356 -97996133 + MLT2A1 LTR ERVL 392 444 0 550 292 83 13 chr12 46286357 46286658 -97995831 - L1ME3A LINE L1 -5300 819 498 332 324 43 72 chr12 46286664 46286871 -97995618 - L1ME3A LINE L1 -5671 448 248 1317 262 65 29 chr12 46286891 46287707 -97994782 - L1M4 LINE L1 -2339 3807 2963 3777 73 0 23 chr12 46288214 46288734 -97993755 + L1PA8A LINE L1 5624 6131 0 2178 119 0 0 chr12 46289351 46289645 -97992844 - AluSx SINE Alu -18 294 1 201 121 0 0 chr12 46290470 46290503 -97991986 + (TAA)n Simple_repeat Simple_repeat 3 35 0 513 300 32 32 chr12 46291099 46291289 -97991200 + MIR SINE MIR 19 208 -54 1555 263 58 64 chr12 46292224 46292961 -97989528 - MER21B LTR ERV1 -124 739 7 1357 77 0 11 chr12 46293908 46294091 -97988398 - L1PA5 LINE L1 0 6154 5974 898 263 25 13 chr12 46294677 46294913 -97987576 + MIR SINE MIR 13 251 -11 340 300 199 8 chr12 46294954 46295221 -97987268 - L1MC4a LINE L1 -1899 5909 5592 658 207 140 13 chr12 46295258 46295408 -97987081 - FRAM SINE Alu -4 172 4 210 91 0 0 chr12 46295917 46295950 -97986539 + (TC)n Simple_repeat Simple_repeat 2 34 0 379 154 15 0 chr12 46295999 46296064 -97986425 - MIR SINE MIR -89 173 108 479 235 117 25 chr12 46296399 46296595 -97985894 - L2 LINE L2 -2 3311 3098 203 343 48 19 chr12 46296887 46296992 -97985497 + MIR SINE MIR 44 151 -111 1847 148 26 47 chr12 46298062 46298406 -97984083 - MER1B DNA MER1_type 0 337 1 189 264 176 22 chr12 46299270 46299361 -97983128 + MIR SINE MIR 148 252 -10 219 396 18 18 chr12 46299499 46299663 -97982826 - L2 LINE L2 -224 3048 2885 317 284 39 0 chr12 46300146 46300248 -97982241 - MIR SINE MIR -38 224 119 2234 34 0 0 chr12 46302638 46302905 -97979584 - L1PA5 LINE L1 0 6154 5888 906 207 69 19 chr12 46303924 46304185 -97978304 + L1MA9 LINE L1 6001 6274 -38 2116 95 20 30 chr12 46304273 46304578 -97977911 + AluSx SINE Alu 1 302 -10 297 273 16 83 chr12 46304588 46304709 -97977780 + L2 LINE L2 3192 3304 -9 1927 137 126 0 chr12 46305083 46305441 -97977048 - MER57A LTR ERV1 0 403 1 14977 113 17 24 chr12 46305647 46308070 -97974419 - Tigger1 DNA MER2_type -12 2406 1 961 296 29 13 chr12 46308484 46308888 -97973601 - L2 LINE L2 -222 3091 2679 1821 163 0 27 chr12 46309062 46309362 -97973127 - AluJb SINE Alu -20 292 1 419 266 22 7 chr12 46309362 46309500 -97972989 - MLT1L LTR MaLR -157 458 237 349 233 117 19 chr12 46309791 46309894 -97972595 - MIR SINE MIR -62 146 34 280 216 29 69 chr12 46310639 46310741 -97971748 - MIR SINE MIR -54 208 111 421 364 22 11 chr12 46310982 46311166 -97971323 - MER5A DNA MER1_type -3 186 1 194 316 18 0 chr12 46311867 46311924 -97970565 - L2 LINE L2 -1 3312 3255 2281 102 0 13 chr12 46311981 46312286 -97970203 + AluSc SINE Alu 1 301 -8 262 293 135 72 chr12 46312447 46312669 -97969820 + MIR SINE MIR 21 256 -6 526 263 0 8 chr12 46313379 46313512 -97968977 + MER94 DNA DNA 2 133 -1 24 53 0 0 chr12 46313646 46313684 -97968805 + AT_rich Low_complexity Low_complexity 1 38 0 202 316 18 0 chr12 46313727 46313784 -97968705 - MIR SINE MIR -140 122 65 230 0 33 0 chr12 46314369 46314399 -97968090 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 37805 29 28 1 chr12 46314399 46320413 -97962076 - L1HS LINE L1 -16 6139 1 25 31 0 0 chr12 46320418 46320450 -97962039 + AT_rich Low_complexity Low_complexity 1 32 0 200 269 10 87 chr12 46320745 46320849 -97961640 + MIR SINE MIR 70 165 -97 514 331 22 0 chr12 46321236 46321414 -97961075 - MER117 DNA MER1_type 0 197 16 1787 54 0 0 chr12 46321414 46321636 -97960853 + L1PA5 LINE L1 5920 6141 -13 287 326 76 111 chr12 46322047 46323509 -97958980 + L2 LINE L2 1645 3053 -219 255 348 18 55 chr12 46324534 46324698 -97957791 - L2 LINE L2 -189 3083 2926 545 301 17 23 chr12 46325870 46326043 -97956446 + MER5B DNA MER1_type 1 172 -6 2177 112 45 31 chr12 46327087 46327444 -97955045 - THE1B LTR MaLR -2 362 1 1934 155 32 27 chr12 46327499 46327873 -97954616 + Tigger2a DNA MER2_type 3 378 -56 2373 127 10 20 chr12 46327874 46328214 -97954275 - L1PA15 LINE L1 0 6165 5828 2334 104 3 0 chr12 46328214 46328522 -97953967 - AluY SINE Alu -2 309 1 2373 127 10 20 chr12 46328522 46328582 -97953907 - L1PA15 LINE L1 -337 5828 5769 * 14322 140 16 22 chr12 46328579 46331293 -97951196 - L1PA11 LINE L1 -1 6173 3463 2406 51 0 10 chr12 46331293 46331587 -97950902 - AluY SINE Alu -20 291 1 14322 140 16 22 chr12 46331587 46332322 -97950167 - L1PA11 LINE L1 -2711 3463 2726 651 129 0 8 chr12 46332328 46332432 -97950057 - L1ME LINE L1 -348 5773 5676 1537 182 64 72 chr12 46333452 46333575 -97948914 + MLT2C1 LTR ERVL 10 132 -265 2085 130 3 0 chr12 46333575 46333868 -97948621 + AluSp SINE Alu 1 294 -19 1537 182 64 72 chr12 46333868 46334085 -97948404 + MLT2C1 LTR ERVL 132 349 -48 219 69 0 0 chr12 46334085 46334114 -97948375 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1537 182 64 72 chr12 46334114 46334162 -97948327 + MLT2C1 LTR ERVL 349 396 -1 208 218 10 79 chr12 46334403 46334504 -97947985 + CT-rich Low_complexity Low_complexity 3 96 0 440 225 11 0 chr12 46334620 46334709 -97947780 + L2 LINE L2 3224 3313 0 379 265 107 36 chr12 46336636 46336832 -97945657 - L1ME3 LINE L1 -197 5965 5756 * 1684 273 110 29 chr12 46336828 46338050 -97944439 - L1ME3 LINE L1 -2616 3530 2210 348 295 92 12 chr12 46338091 46338264 -97944225 - HAL1 LINE L1 -1554 953 767 372 338 108 65 chr12 46338498 46338963 -97943526 - HAL1 LINE L1 -2012 495 11 1074 163 28 28 chr12 46340393 46340608 -97941881 - AluJb SINE Alu -11 301 87 187 229 21 21 chr12 46341548 46341596 -97940893 + L2 LINE L2 3266 3313 0 196 157 59 0 chr12 46341810 46341861 -97940628 + GA-rich Low_complexity Low_complexity 2 55 0 2151 128 33 22 chr12 46343709 46344069 -97938420 - THE1B LTR MaLR 0 364 1 277 382 71 4 chr12 46344144 46344369 -97938120 - MIR SINE MIR -14 248 9 23 54 0 0 chr12 46346609 46346646 -97935843 + AT_rich Low_complexity Low_complexity 1 37 0 1191 116 0 0 chr12 46347448 46347620 -97934869 - L1PA13 LINE L1 -19 6144 5973 418 347 59 13 chr12 46348218 46348457 -97934032 + MIR SINE MIR 9 258 -4 219 267 117 75 chr12 46348939 46349059 -97933430 + MIR SINE MIR 67 191 -71 212 100 25 0 chr12 46350046 46350086 -97932403 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 2703 26 0 0 chr12 46351077 46351381 -97931108 + AluY SINE Alu 1 304 -7 192 321 49 56 chr12 46351551 46351713 -97930776 + MIR SINE MIR 33 193 -69 22 0 0 0 chr12 46352221 46352243 -97930246 + AT_rich Low_complexity Low_complexity 1 22 0 234 276 323 0 chr12 46352569 46352696 -97929793 + MIR3 SINE MIR 30 197 -11 2331 98 13 0 chr12 46353855 46354162 -97928327 + AluSx SINE Alu 1 311 -1 416 323 0 15 chr12 46354883 46355016 -97927473 + L2 LINE L2 3183 3313 0 28 48 0 0 chr12 46355659 46355701 -97926788 + AT_rich Low_complexity Low_complexity 1 42 0 557 255 14 60 chr12 46356411 46356627 -97925862 - LTR16A1 LTR ERVL -1 456 251 1607 43 5 24 chr12 46357555 46357766 -97924723 - L1PA4 LINE L1 0 6155 5949 309 68 115 7 chr12 46358041 46358189 -97924300 + (TA)n Simple_repeat Simple_repeat 1 164 0 462 113 63 5 chr12 46358207 46358432 -97924057 + (TA)n Simple_repeat Simple_repeat 1 238 0 24 53 0 0 chr12 46358563 46358601 -97923888 + AT_rich Low_complexity Low_complexity 1 38 0 203 316 18 0 chr12 46358644 46358701 -97923788 - MIR SINE MIR -140 122 65 521 248 13 65 chr12 46359333 46359440 -97923049 + MIR SINE MIR 10 108 -154 835 250 11 0 chr12 46359440 46359616 -97922873 + MER45A DNA AcHobo 1 178 0 521 248 13 65 chr12 46359616 46359661 -97922828 + MIR SINE MIR 108 154 -108 7028 50 1 5 chr12 46362800 46363673 -97918816 - L1PA7 LINE L1 0 6154 5285 1921 146 7 7 chr12 46363825 46364127 -97918362 + AluSx SINE Alu 1 302 -10 26 30 0 0 chr12 46365125 46365158 -97917331 + AT_rich Low_complexity Low_complexity 1 33 0 432 296 90 14 chr12 46365896 46366119 -97916370 + L2 LINE L2 2733 2972 -342 600 289 72 14 chr12 46366126 46366334 -97916155 + L2 LINE L2 3094 3313 0 3819 195 19 12 chr12 46366901 46367702 -97914787 + L1MC1 LINE L1 5528 6333 0 352 204 31 10 chr12 46367702 46367800 -97914689 + L1M4 LINE L1 1792 1891 -4493 357 24 0 0 chr12 46367802 46367844 -97914645 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1414 204 108 8 chr12 46367848 46368296 -97914193 + L1M4 LINE L1 2033 2565 -3884 440 265 25 6 chr12 46368297 46368459 -97914030 + L1M4 LINE L1 5254 5418 -964 465 78 0 0 chr12 46368468 46368532 -97913957 + Alu SINE Alu 1 64 -246 506 130 35 19 chr12 46368632 46368890 -97913599 + (TA)n Simple_repeat Simple_repeat 1 262 0 30 45 0 0 chr12 46368890 46368934 -97913555 + AT_rich Low_complexity Low_complexity 1 44 0 485 133 31 25 chr12 46368934 46369293 -97913196 + (TA)n Simple_repeat Simple_repeat 1 361 0 466 235 14 113 chr12 46369559 46369772 -97912717 - MIR SINE MIR -69 193 2 21 36 0 0 chr12 46371233 46371261 -97911228 + AT_rich Low_complexity Low_complexity 1 28 0 712 256 106 7 chr12 46371340 46371641 -97910848 + MER114 LTR ERV 1 331 -317 666 257 26 0 chr12 46372878 46373030 -97909459 - MER5B DNA MER1_type -3 175 20 23 33 0 0 chr12 46376272 46376302 -97906187 + AT_rich Low_complexity Low_complexity 1 30 0 228 182 0 0 chr12 46376707 46376751 -97905738 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 1684 190 7 0 chr12 46376969 46377259 -97905230 + AluJo SINE Alu 3 294 -18 411 271 146 0 chr12 46377352 46377496 -97904993 - MIR SINE MIR -29 233 69 231 271 53 28 chr12 46377761 46377833 -97904656 + MIR SINE MIR 49 144 -64 319 217 12 36 chr12 46378082 46378165 -97904324 + MIR SINE MIR 182 262 0 180 0 0 0 chr12 46378246 46378266 -97904223 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 214 358 135 0 chr12 46378362 46378510 -97903979 - L2 LINE L2 -954 2360 2193 22 56 0 0 chr12 46379280 46379316 -97903173 + AT_rich Low_complexity Low_complexity 1 36 0 2270 82 9 0 chr12 46380664 46380981 -97901508 - L1PB2 LINE L1 -4 6147 5828 2243 107 23 41 chr12 46381230 46381623 -97900866 - L1MA4 LINE L1 -5 6295 5910 4280 190 18 19 chr12 46381628 46382764 -97899725 + L1M2 LINE L1 2647 3785 -3063 257 300 147 63 chr12 46383796 46383832 -97898657 + MIR3 SINE MIR 1 33 -229 2255 78 3 3 chr12 46383832 46384125 -97898364 + AluY SINE Alu 1 293 -18 257 300 147 63 chr12 46384125 46384338 -97898151 + MIR3 SINE MIR 33 259 -3 2388 80 3 0 chr12 46384420 46384720 -97897769 + AluSg SINE Alu 1 301 -9 415 263 117 21 chr12 46384894 46385134 -97897355 - L1ME4a LINE L1 -248 5873 5611 * 3883 184 46 41 chr12 46385133 46386199 -97896290 - L1MB3 LINE L1 -1 6182 5118 5736 42 0 0 chr12 46386199 46386887 -97895602 + L1PA5 LINE L1 5450 6137 -17 3883 184 46 41 chr12 46386887 46386953 -97895536 - L1MB3 LINE L1 -1065 5118 5054 389 119 2 0 chr12 46386954 46387018 -97895471 - L1MB3 LINE L1 -1395 4751 4687 26 0 0 0 chr12 46387175 46387201 -97895288 + AT_rich Low_complexity Low_complexity 1 26 0 786 266 48 0 chr12 46387201 46387430 -97895059 - L1MD3 LINE L1 -10 7985 7746 2781 13 0 0 chr12 46387461 46387762 -97894727 - AluYa5 SINE Alu -10 301 1 989 187 14 18 chr12 46387765 46387984 -97894505 - L1MC4a LINE L1 -583 7225 7008 500 276 34 71 chr12 46388208 46388587 -97893902 - L2 LINE L2 -207 3106 2740 1642 163 72 85 chr12 46388635 46389108 -97893381 - MLT1C LTR MaLR 0 467 1 2307 91 0 3 chr12 46389179 46389476 -97893013 - AluSx SINE Alu -16 296 1 1739 197 0 3 chr12 46389522 46389827 -97892662 - AluSx SINE Alu -7 305 2 21 89 0 0 chr12 46390190 46390246 -97892243 + AT_rich Low_complexity Low_complexity 1 56 0 894 251 9 9 chr12 46390665 46390888 -97891601 + MER58A DNA MER1_type 2 224 0 313 350 54 90 chr12 46391059 46391505 -97890984 - L2 LINE L2 -1 3271 2842 775 297 114 62 chr12 46391617 46392530 -97889959 - L2 LINE L2 -654 2660 1701 594 266 0 22 chr12 46392667 46392806 -97889683 + L2 LINE L2 3178 3313 0 1152 330 148 18 chr12 46394250 46395056 -97887433 - L3 LINE CR1 -109 1468 522 331 278 65 9 chr12 46395187 46395295 -97887194 + MIR SINE MIR 124 237 -25 373 82 0 0 chr12 46395299 46395348 -97887141 - Ricksha DNA DNA -2342 904 856 2243 107 3 0 chr12 46395363 46395661 -97886828 + AluSq SINE Alu 1 299 -14 1986 188 27 98 chr12 46395677 46396230 -97886259 - MLT2B3 LTR ERVL -40 514 1 361 270 147 38 chr12 46396261 46396603 -97885886 - MLT1J1 LTR MaLR 0 446 50 360 64 0 0 chr12 46396664 46396711 -97885778 + (CAT)n Simple_repeat Simple_repeat 2 48 0 221 349 12 0 chr12 46396719 46396805 -97885684 - L3 LINE CR1 -1056 521 435 11047 29 0 0 chr12 46396805 46398884 -97883605 - L1PA2 LINE L1 0 6155 4076 1407 29 0 0 chr12 46398884 46399056 -97883433 + L1P LINE L1 3869 4040 -2106 262 187 149 47 chr12 46399512 46399619 -97882870 - L1ME4a LINE L1 -23 6098 5981 1681 199 77 136 chr12 46400372 46400518 -97881971 + MLT1E2 LTR MaLR 1 154 -472 2060 143 3 0 chr12 46400518 46400819 -97881670 + AluSx SINE Alu 3 304 -8 1681 199 77 136 chr12 46400819 46401335 -97881154 + MLT1E2 LTR MaLR 154 626 0 249 264 104 62 chr12 46401384 46401528 -97880961 + L2 LINE L2 2935 3084 -188 429 20 0 0 chr12 46402318 46402368 -97880121 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 31 0 0 chr12 46403780 46403812 -97878677 + AT_rich Low_complexity Low_complexity 1 32 0 195 344 54 43 chr12 46403976 46404069 -97878420 - L2 LINE L2 -46 3226 3133 548 233 74 117 chr12 46405087 46405379 -97877110 + L2 LINE L2 3016 3296 -17 1284 172 0 15 chr12 46405379 46405652 -97876837 - L1MA4 LINE L1 -5 6295 6027 548 233 74 117 chr12 46405652 46405668 -97876821 + L2 LINE L2 3296 3311 -2 279 322 62 27 chr12 46406790 46406936 -97875553 - MER5B DNA MER1_type -3 175 25 * 303 296 72 40 chr12 46406817 46406942 -97875547 + MER5A DNA MER1_type 43 171 -18 396 265 0 0 chr12 46407162 46407264 -97875225 + MER46C DNA MER2_type 92 193 -145 231 107 24 48 chr12 46407310 46407394 -97875095 + (TA)n Simple_repeat Simple_repeat 1 82 0 2484 119 11 19 chr12 46407423 46407800 -97874689 - THE1C LTR MaLR 0 375 2 356 143 14 0 chr12 46407800 46407870 -97874619 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 27 29 0 0 chr12 46408354 46408388 -97874101 + AT_rich Low_complexity Low_complexity 1 34 0 219 278 37 0 chr12 46408890 46408944 -97873545 + MIR SINE MIR 92 147 -115 21 95 0 0 chr12 46409058 46409121 -97873368 + AT_rich Low_complexity Low_complexity 1 63 0 325 283 50 88 chr12 46409169 46409328 -97873161 + MIR SINE MIR 17 169 -93 22 0 0 0 chr12 46409751 46409773 -97872716 + AT_rich Low_complexity Low_complexity 1 22 0 1339 289 97 39 chr12 46409778 46410651 -97871838 + L1MEd LINE L1 76 999 -5120 1720 127 15 19 chr12 46411016 46411284 -97871205 + AluJb SINE Alu 21 287 -25 1433 235 62 8 chr12 46411456 46411967 -97870522 - MLT1E2 LTR MaLR 0 626 40 247 278 119 63 chr12 46412021 46412229 -97870260 + L1MEd LINE L1 2255 2481 -3648 1551 178 62 17 chr12 46412229 46412347 -97870142 + AluJo SINE Alu 1 112 -200 450 0 0 0 chr12 46412347 46412397 -97870092 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1551 178 62 17 chr12 46412397 46412570 -97869919 + AluJo SINE Alu 112 305 -7 247 278 119 63 chr12 46412570 46412613 -97869876 + L1MEd LINE L1 2481 2520 -3609 356 273 76 23 chr12 46412627 46412840 -97869649 + L1MEd LINE L1 3019 3248 -2881 1625 218 54 18 chr12 46414975 46415365 -97867124 - LTR52 LTR ERVL -3 418 15 2153 116 0 3 chr12 46416294 46416629 -97865860 + AluSx SINE Alu 1 312 0 305 252 57 69 chr12 46418051 46418210 -97864279 + HAL1b LINE L1 376 532 -816 4440 237 26 16 chr12 46418786 46419267 -97863222 - L1P LINE L1 -2172 3974 3499 1798 159 7 27 chr12 46419267 46419568 -97862921 - AluSx SINE Alu -17 295 1 234 0 0 0 chr12 46419569 46419595 -97862894 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4440 237 26 16 chr12 46419595 46420399 -97862090 - L1P LINE L1 -2646 3500 2674 * 5250 183 26 16 chr12 46420398 46421572 -97860917 + L1PA15 LINE L1 3995 5157 -1008 2287 130 31 0 chr12 46421572 46421925 -97860564 + THE1B LTR MaLR 1 364 0 5250 183 26 16 chr12 46421925 46422368 -97860121 + L1PA15 LINE L1 5157 5594 -571 1963 138 47 97 chr12 46422368 46422579 -97859910 - MER9 LTR ERVK 0 511 291 188 83 0 28 chr12 46422579 46422615 -97859874 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1963 138 47 97 chr12 46422615 46422941 -97859548 - MER9 LTR ERVK -220 291 1 5250 183 26 16 chr12 46422941 46423456 -97859033 + L1PA15 LINE L1 5594 6159 -6 330 292 8 50 chr12 46424238 46424358 -97858131 - MIR SINE MIR -130 132 18 290 303 40 0 chr12 46424363 46424462 -97858027 + MIR SINE MIR 78 180 -82 198 0 0 0 chr12 46425204 46425226 -97857263 + (T)n Simple_repeat Simple_repeat 1 22 0 2795 163 33 30 chr12 46428564 46429073 -97853416 + Tigger7 DNA MER2_type 1 511 -1976 537 176 11 0 chr12 46429081 46429172 -97853317 + Tigger7 DNA MER2_type 2396 2487 0 273 314 25 42 chr12 46429592 46429710 -97852779 - MIR SINE MIR -1 261 146 2462 108 13 5 chr12 46430010 46430382 -97852107 + THE1C LTR MaLR 1 375 0 2075 106 3 67 chr12 46430615 46430944 -97851545 - AluSx SINE Alu -4 308 1 460 258 115 95 chr12 46432276 46432474 -97850015 + MLT1I LTR MaLR 3 195 -214 2156 127 0 0 chr12 46432474 46432782 -97849707 - AluSg SINE Alu -2 308 1 460 258 115 95 chr12 46432782 46432974 -97849515 + MLT1I LTR MaLR 195 401 -8 227 109 43 22 chr12 46434371 46434417 -97848072 + L1 LINE L1 3711 3757 -2389 2190 108 0 0 chr12 46434423 46434710 -97847779 + AluSx SINE Alu 5 291 -21 512 200 0 0 chr12 46435249 46435344 -97847145 - L1MC3 LINE L1 -488 7297 7203 506 206 20 10 chr12 46435344 46435446 -97847043 - MLT1F1 LTR MaLR -430 137 35 3421 205 15 61 chr12 46435446 46436330 -97846159 - L1MC3 LINE L1 -688 7097 6255 225 303 230 7 chr12 46436525 46436677 -97845812 - L3 LINE CR1 -3 1574 1389 273 243 104 90 chr12 46437158 46437302 -97845187 + MIR3 SINE MIR 31 176 -32 262 358 41 0 chr12 46437515 46437638 -97844851 + MIR SINE MIR 126 253 -9 1814 138 65 30 chr12 46437754 46438124 -97844365 - L1 LINE L1 -1966 4180 3798 788 181 31 57 chr12 46438382 46438609 -97843880 - L1MB3 LINE L1 -2 6181 5961 2858 183 44 20 chr12 46438740 46439533 -97842956 - L1MB3 LINE L1 -279 5904 5088 5706 39 7 0 chr12 46439533 46440222 -97842267 + L1PA5 LINE L1 5450 6143 -11 9297 148 16 4 chr12 46440238 46442952 -97839537 + L1MA2 LINE L1 3556 6304 0 3848 136 17 17 chr12 46442952 46443634 -97838855 + L1MA8 LINE L1 5594 6286 -5 29 28 0 0 chr12 46443636 46443672 -97838817 + AT_rich Low_complexity Low_complexity 1 36 0 366 23 0 0 chr12 46443744 46443787 -97838702 + (TG)n Simple_repeat Simple_repeat 2 44 0 1428 240 63 58 chr12 46444217 46444615 -97837874 - MLT1E3 LTR MaLR 0 624 245 2408 77 7 0 chr12 46444615 46444914 -97837575 - AluSg SINE Alu -9 301 1 1428 240 63 58 chr12 46444914 46445159 -97837330 - MLT1E3 LTR MaLR -379 245 3 2204 106 3 3 chr12 46446355 46446666 -97835823 - AluSx SINE Alu -1 311 1 202 385 95 42 chr12 46446712 46447289 -97835200 + L2 LINE L2 1922 2529 -785 230 381 108 0 chr12 46447428 46447567 -97834922 + L2 LINE L2 3111 3264 -8 2795 163 33 30 chr12 46449573 46450082 -97832407 + Tigger7 DNA MER2_type 1 511 -1976 537 176 11 0 chr12 46450090 46450181 -97832308 + Tigger7 DNA MER2_type 2396 2487 0 273 314 25 42 chr12 46450601 46450719 -97831770 - MIR SINE MIR -1 261 146 2462 108 13 5 chr12 46451019 46451391 -97831098 + THE1C LTR MaLR 1 375 0 2075 106 3 67 chr12 46451624 46451953 -97830536 - AluSx SINE Alu -4 308 1 460 258 115 95 chr12 46453285 46453483 -97829006 + MLT1I LTR MaLR 3 195 -214 2156 127 0 0 chr12 46453483 46453791 -97828698 - AluSg SINE Alu -2 308 1 460 258 115 95 chr12 46453791 46453983 -97828506 + MLT1I LTR MaLR 195 401 -8 2144 131 53 59 chr12 46455379 46455431 -97827058 + L1 LINE L1 3711 3762 -2384 2212 107 7 0 chr12 46455431 46455729 -97826760 + AluSx SINE Alu 5 304 -8 2144 131 53 59 chr12 46455729 46456149 -97826340 + L1 LINE L1 3762 4180 -1966 262 358 41 0 chr12 46456265 46456388 -97826101 - MIR SINE MIR -9 253 126 268 252 105 84 chr12 46456602 46456745 -97825744 - MIR3 SINE MIR -32 176 31 225 303 230 7 chr12 46457226 46457378 -97825111 + L3 LINE CR1 1389 1574 -3 3421 205 15 61 chr12 46457573 46458457 -97824032 + L1MC3 LINE L1 6255 7097 -688 506 206 20 10 chr12 46458457 46458559 -97823930 + MLT1F1 LTR MaLR 35 137 -430 512 200 0 0 chr12 46458559 46458654 -97823835 + L1MC3 LINE L1 7203 7297 -488 2328 98 0 0 chr12 46459188 46459484 -97823005 - AluSx SINE Alu -16 296 1 1337 69 11 5 chr12 46460529 46460718 -97821771 - L1PA13 LINE L1 -1 6162 5973 288 268 0 0 chr12 46461623 46461694 -97820795 + (CA)n Simple_repeat Simple_repeat 2 72 0 357 125 0 0 chr12 46461990 46462046 -97820443 + (TCC)n Simple_repeat Simple_repeat 3 58 0 228 261 183 17 chr12 46463347 46463462 -97819027 - MIR SINE MIR -7 255 122 207 0 0 0 chr12 46463987 46464010 -97818479 + (TG)n Simple_repeat Simple_repeat 2 24 0 2257 145 29 3 chr12 46464029 46464409 -97818080 + MLT1B LTR MaLR 1 390 0 1361 160 91 0 chr12 46464712 46464943 -97817546 + AluJb SINE Alu 37 288 -24 248 349 151 28 chr12 46465190 46465402 -97817087 + L2 LINE L2 3025 3262 -10 182 262 0 0 chr12 46465430 46465472 -97817017 - MIR SINE MIR -67 141 100 615 301 199 12 chr12 46465501 46465843 -97816646 - L2 LINE L2 -422 2892 2487 898 308 168 32 chr12 46465856 46466776 -97815713 - L2 LINE L2 -8 3305 2250 215 213 21 0 chr12 46466807 46466854 -97815635 - L2 LINE L2 -968 2346 2299 334 315 62 8 chr12 46467592 46467722 -97814767 - MIR SINE MIR -64 198 62 1136 269 116 18 chr12 46468686 46469340 -97813149 - L1ME3A LINE L1 -208 6460 5734 595 284 120 22 chr12 46469378 46469603 -97812886 + MIR SINE MIR 16 262 0 1343 263 107 62 chr12 46469697 46470880 -97811609 - L1ME3A LINE L1 -1071 5573 4338 351 311 36 16 chr12 46471203 46471396 -97811093 - L1ME3A LINE L1 -286 5884 5688 1324 273 72 25 chr12 46471397 46472236 -97810253 - L1ME3A LINE L1 -2298 4346 3469 845 249 97 50 chr12 46472250 46472952 -97809537 - L1MEc LINE L1 -3317 3327 2593 242 280 27 0 chr12 46473208 46473283 -97809206 - L1MEc LINE L1 -4652 1994 1918 283 210 82 108 chr12 46473337 46473532 -97808957 - L1M2 LINE L1 -4338 2511 2322 647 310 76 58 chr12 46473532 46473673 -97808816 - L1MEc LINE L1 -4848 1844 1707 180 0 0 0 chr12 46473673 46473693 -97808796 + (GA)n Simple_repeat Simple_repeat 2 21 0 647 310 76 58 chr12 46473693 46474253 -97808236 - L1MEc LINE L1 -4985 1707 970 323 322 51 8 chr12 46474563 46474681 -97807808 - L1MEc LINE L1 -5946 688 566 344 296 9 86 chr12 46474802 46474923 -97807566 + L2 LINE L2 3111 3209 -104 1879 144 10 7 chr12 46474923 46475221 -97807268 + AluSx SINE Alu 1 299 -13 344 296 9 86 chr12 46475221 46475319 -97807170 + L2 LINE L2 3209 3313 0 909 165 0 43 chr12 46475967 46476158 -97806331 + FAM SINE Alu 1 49 0 1082 327 154 29 chr12 46476399 46477124 -97805365 - L3 LINE CR1 -553 1024 209 749 296 143 28 chr12 46477669 46477990 -97804499 - MLT1J LTR MaLR -151 360 3 272 287 54 31 chr12 46478101 46478230 -97804259 - L1MC4a LINE L1 -1847 5961 5830 629 268 89 71 chr12 46478234 46478467 -97804022 - L1MC4a LINE L1 -2030 5778 5534 1195 208 81 22 chr12 46478467 46478789 -97803700 + MER2 DNA MER2_type 2 342 -2 629 268 89 71 chr12 46478789 46478947 -97803542 - L1MC4a LINE L1 -2274 5534 5380 419 293 105 42 chr12 46478954 46479479 -97803010 - L1MC4a LINE L1 -958 5188 4631 3455 98 4 6 chr12 46479616 46480125 -97802364 - L1PA13 LINE L1 0 6163 5656 341 131 49 8 chr12 46480125 46480247 -97802242 + (TA)n Simple_repeat Simple_repeat 1 127 0 2683 91 21 0 chr12 46480268 46480702 -97801787 - L1PA13 LINE L1 -526 5635 5193 25 51 0 0 chr12 46480900 46480939 -97801550 + AT_rich Low_complexity Low_complexity 1 39 0 5285 142 24 20 chr12 46480981 46481910 -97800579 - L1MA7 LINE L1 -7 6284 5353 5872 175 21 12 chr12 46481972 46483176 -97799313 - L1MA7 LINE L1 -777 5369 4155 23 54 0 0 chr12 46483768 46483805 -97798684 + AT_rich Low_complexity Low_complexity 1 37 0 858 182 42 0 chr12 46484924 46485116 -97797373 - L1MA6 LINE L1 -4 6296 6097 299 213 0 0 chr12 46485116 46485177 -97797312 + L1M LINE L1 5367 5427 -907 204 257 86 29 chr12 46485741 46485811 -97796678 - MER91C DNA MER1_type -46 94 21 272 299 72 0 chr12 46485825 46485922 -97796567 - MER117 DNA MER1_type -49 148 45 768 160 15 0 chr12 46486502 46486633 -97795856 - MSTA LTR MaLR -83 345 213 6750 74 8 1 chr12 46486858 46488500 -97793989 + L1PA8 LINE L1 4523 6169 -3 186 382 38 8 chr12 46489574 46489705 -97792784 + L2 LINE L2 2885 3019 -253 1800 160 7 0 chr12 46489709 46490021 -97792468 + AluSx SINE Alu 1 314 0 255 290 0 14 chr12 46490430 46490499 -97791990 + GA-rich Low_complexity Low_complexity 2 69 0 21 57 0 0 chr12 46490715 46490750 -97791739 + AT_rich Low_complexity Low_complexity 1 35 0 408 315 112 25 chr12 46491115 46491312 -97791177 - MIR SINE MIR -47 215 2 378 0 0 0 chr12 46491321 46491363 -97791126 + (CA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr12 46491563 46491584 -97790905 + AT_rich Low_complexity Low_complexity 1 21 0 419 300 81 33 chr12 46491813 46492146 -97790343 + L1ME4a LINE L1 5329 5677 -444 5086 36 0 0 chr12 46492150 46492757 -97789732 - L1PA4 LINE L1 -7 6148 5542 1188 60 18 0 chr12 46492757 46492923 -97789566 + L1P1 LINE L1 5282 5450 -705 372 308 40 40 chr12 46492972 46493225 -97789264 + L1ME4a LINE L1 5741 5993 -128 25 0 0 0 chr12 46493496 46493521 -97788968 + AT_rich Low_complexity Low_complexity 1 25 0 320 309 13 7 chr12 46493603 46493752 -97788737 + (TA)n Simple_repeat Simple_repeat 2 151 0 637 195 74 0 chr12 46496333 46496482 -97786007 + MER33 DNA MER1_type 9 168 -156 375 256 95 66 chr12 46496705 46496945 -97785544 - MIR SINE MIR -1 261 6 21 36 0 0 chr12 46498602 46498630 -97783859 + AT_rich Low_complexity Low_complexity 1 28 0 312 325 163 15 chr12 46498652 46498855 -97783634 - MIR SINE MIR -28 234 2 180 231 182 33 chr12 46499821 46499942 -97782547 - MIR SINE MIR -110 152 14 1700 73 0 9 chr12 46500154 46500372 -97782117 - AluSc SINE Alu -93 216 1 3085 46 31 5 chr12 46500711 46501102 -97781387 + L1P3 LINE L1 5366 5766 -388 21 0 0 0 chr12 46501308 46501329 -97781160 + AT_rich Low_complexity Low_complexity 1 21 0 328 246 363 11 chr12 46502304 46502483 -97780006 - MIR SINE MIR 0 262 21 746 322 113 8 chr12 46502668 46503059 -97779430 - L2 LINE L2 -353 2961 2530 4169 198 21 24 chr12 46503077 46504833 -97777656 - L1MB5 LINE L1 0 6174 4319 2757 212 47 17 chr12 46504845 46505547 -97776942 - L1MA10 LINE L1 -18 6316 5594 2009 133 0 20 chr12 46505629 46505929 -97776560 - AluSx SINE Alu -18 294 1 236 253 37 25 chr12 46505988 46506150 -97776339 + (TA)n Simple_repeat Simple_repeat 1 164 0 240 200 67 58 chr12 46506176 46506296 -97776193 - L1ME LINE L1 -702 5462 5342 313 272 22 83 chr12 46506298 46506478 -97776011 - L1ME3A LINE L1 -96 6074 5906 265 243 112 9 chr12 46506481 46506588 -97775901 - L1ME3A LINE L1 -225 5945 5828 228 128 85 0 chr12 46506969 46507016 -97775473 + T-rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr12 46507178 46507207 -97775282 + AT_rich Low_complexity Low_complexity 1 29 0 309 361 9 9 chr12 46507612 46507720 -97774769 + MIR SINE MIR 6 113 -149 3977 167 2 70 chr12 46507758 46508675 -97773814 - L1 LINE L1 -1661 4485 3631 200 219 0 0 chr12 46508771 46508812 -97773677 + CT-rich Low_complexity Low_complexity 1 41 0 2685 185 26 1 chr12 46508879 46509680 -97772809 + L1MA8 LINE L1 4783 5607 -705 * 9584 150 15 16 chr12 46509679 46509813 -97772676 + L1MA2 LINE L1 3440 3573 -2731 7293 33 10 1 chr12 46509813 46510853 -97771636 + L1PA5 LINE L1 5096 6143 -11 9584 150 15 16 chr12 46510853 46513584 -97768905 + L1MA2 LINE L1 3573 6304 0 3848 136 17 17 chr12 46513584 46514266 -97768223 + L1MA8 LINE L1 5594 6286 -5 29 28 0 0 chr12 46514268 46514304 -97768185 + AT_rich Low_complexity Low_complexity 1 36 0 366 23 0 0 chr12 46514376 46514419 -97768070 + (TG)n Simple_repeat Simple_repeat 2 44 0 1428 240 63 58 chr12 46514849 46515247 -97767242 - MLT1E3 LTR MaLR 0 624 245 2417 77 7 0 chr12 46515247 46515547 -97766942 - AluSg SINE Alu -8 302 1 1428 240 63 58 chr12 46515547 46515792 -97766697 - MLT1E3 LTR MaLR -379 245 3 2204 106 3 3 chr12 46516988 46517299 -97765190 - AluSx SINE Alu -1 311 1 202 385 95 42 chr12 46517345 46517922 -97764567 + L2 LINE L2 1922 2529 -785 230 381 108 0 chr12 46518061 46518200 -97764289 + L2 LINE L2 3111 3264 -8 2453 91 41 0 chr12 46519394 46519735 -97762754 + THE1A LTR MaLR 1 355 0 11290 91 22 0 chr12 46519735 46521281 -97761208 + THE1A-int LTR MaLR 1 1580 0 2466 96 3 33 chr12 46521281 46521518 -97760971 + THE1A LTR MaLR 1 225 -130 2276 90 3 0 chr12 46521518 46521817 -97760672 + AluSc SINE Alu 1 300 -9 2466 96 3 33 chr12 46521817 46521945 -97760544 + THE1A LTR MaLR 225 355 0 30 45 0 0 chr12 46523791 46523835 -97758654 + AT_rich Low_complexity Low_complexity 1 44 0 201 292 76 76 chr12 46525299 46525443 -97757046 + MIR SINE MIR 84 227 -35 22 56 0 0 chr12 46526121 46526157 -97756332 + AT_rich Low_complexity Low_complexity 1 36 0 12803 208 59 28 chr12 46526201 46526711 -97755778 - L1MA9 LINE L1 -1 6199 5706 369 0 0 0 chr12 46526711 46526752 -97755737 + (TG)n Simple_repeat Simple_repeat 2 42 0 12803 208 59 28 chr12 46526752 46527026 -97755463 - L1MA9 LINE L1 -494 5706 5442 2154 92 37 3 chr12 46527026 46527320 -97755169 - AluSg SINE Alu 0 310 7 12803 208 59 28 chr12 46527320 46528118 -97754371 - L1MA9 LINE L1 -758 5442 4670 1357 229 10 20 chr12 46528118 46528424 -97754065 - AluJo SINE Alu -9 303 1 12803 208 59 28 chr12 46528424 46531753 -97750736 - L1MA9 LINE L1 -1530 4670 1445 3976 165 41 17 chr12 46531753 46532468 -97750021 - MER44D DNA MER2_type -1 604 1 12803 208 59 28 chr12 46532468 46532686 -97749803 - L1MA9 LINE L1 -4755 1445 1235 1803 146 7 24 chr12 46532686 46532994 -97749495 - AluSx SINE Alu 0 303 1 12803 208 59 28 chr12 46532994 46533560 -97748929 - L1MA9 LINE L1 -4965 1235 458 2150 301 106 7 chr12 46533626 46534594 -97747895 - L1MA9 LINE L1 -5174 781 11 21 36 0 0 chr12 46535525 46535553 -97746936 + AT_rich Low_complexity Low_complexity 1 28 0 203 271 0 47 chr12 46535814 46535921 -97746568 + T-rich Low_complexity Low_complexity 6 107 0 2281 102 0 7 chr12 46536614 46536918 -97745571 - AluSx SINE Alu -10 302 1 26 50 0 0 chr12 46538114 46538154 -97744335 + AT_rich Low_complexity Low_complexity 1 40 0 22 70 0 0 chr12 46538205 46538248 -97744241 + AT_rich Low_complexity Low_complexity 1 43 0 227 263 0 0 chr12 46539161 46539218 -97743271 + T-rich Low_complexity Low_complexity 4 60 0 2339 80 3 20 chr12 46540532 46540834 -97741655 - AluSp SINE Alu -16 297 1 24 0 0 0 chr12 46540894 46540918 -97741571 + AT_rich Low_complexity Low_complexity 1 24 0 521 157 0 0 chr12 46541277 46541366 -97741123 + L1PB4 LINE L1 6054 6142 -14 7470 174 50 3 chr12 46541427 46542711 -97739778 + L1PA16 LINE L1 22 1365 -6200 4900 140 45 8 chr12 46542717 46543773 -97738716 + L1PA16 LINE L1 6487 7577 -8 210 259 0 0 chr12 46543835 46543893 -97738596 + (TA)n Simple_repeat Simple_repeat 2 59 0 185 330 41 62 chr12 46544067 46544164 -97738325 + L2 LINE L2 3126 3220 -52 2406 67 0 0 chr12 46546105 46546404 -97736085 - AluY SINE Alu -12 299 1 475 308 77 6 chr12 46546638 46546794 -97735695 - MIR3 SINE MIR -2 206 40 450 208 21 76 chr12 46547069 46547213 -97735276 - MIR SINE MIR -8 254 119 2207 92 3 0 chr12 46547842 46548124 -97734365 + AluSp SINE Alu 1 283 -30 275 301 0 34 chr12 46548254 46548392 -97734097 + MER5A DNA MER1_type 1 141 -48 216 97 0 0 chr12 46548665 46548696 -97733793 + (TA)n Simple_repeat Simple_repeat 2 32 0 1182 109 0 0 chr12 46549202 46549416 -97733073 + (TA)n Simple_repeat Simple_repeat 1 214 0 12003 198 39 43 chr12 46549546 46552043 -97730446 - L1PA16 LINE L1 -9 6860 4355 1166 104 0 0 chr12 46552043 46552197 -97730292 - AluSg/x SINE Alu -3 309 156 12003 198 39 43 chr12 46552197 46554871 -97727618 - L1PA16 LINE L1 -2514 4355 2009 1888 109 4 8 chr12 46554871 46555137 -97727352 - AluSq SINE Alu -5 308 44 12003 198 39 43 chr12 46555137 46557138 -97725351 - L1PA16 LINE L1 -4860 2009 2 436 335 164 33 chr12 46557260 46557895 -97724594 + L2 LINE L2 1996 2713 -601 1876 192 32 91 chr12 46560272 46560809 -97721680 + MLT1D LTR MaLR 1 505 0 383 326 59 0 chr12 46561881 46562016 -97720473 + L3 LINE CR1 974 1116 -461 493 275 192 22 chr12 46562122 46562616 -97719873 - L1ME4a LINE L1 -139 5982 5405 589 233 62 76 chr12 46562647 46562935 -97719554 - MER46C DNA MER2_type -43 295 12 27 0 0 0 chr12 46562969 46562996 -97719493 + AT_rich Low_complexity Low_complexity 1 27 0 357 343 6 12 chr12 46562996 46563168 -97719321 - L1ME4a LINE L1 -765 5381 5211 1808 133 0 25 chr12 46563364 46563649 -97718840 + AluSx SINE Alu 1 278 -34 280 0 0 48 chr12 46563650 46563692 -97718797 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 619 299 47 24 chr12 46563864 46564118 -97718371 + L3 LINE CR1 1097 1356 -221 210 297 161 25 chr12 46564132 46564250 -97718239 + L2 LINE L2 2689 2822 -492 186 305 127 51 chr12 46565710 46565828 -97716661 + L2 LINE L2 3146 3272 0 329 271 178 68 chr12 46566626 46566907 -97715582 + L3 LINE CR1 771 1082 -495 624 229 14 0 chr12 46566927 46567067 -97715422 + MER31B LTR ERV1 325 466 0 3387 152 52 27 chr12 46567067 46567727 -97714762 - L1MB3 LINE L1 -100 6083 5408 1526 132 69 23 chr12 46567845 46568149 -97714340 - MER33 DNA MER1_type 0 324 7 22 35 0 0 chr12 46568663 46568692 -97713797 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr12 46569427 46569468 -97713021 + AT_rich Low_complexity Low_complexity 1 41 0 369 275 108 8 chr12 46569608 46569728 -97712761 + MIR SINE MIR 58 189 -73 399 21 0 0 chr12 46570198 46570246 -97712243 + (CA)n Simple_repeat Simple_repeat 2 49 0 272 298 57 75 chr12 46570727 46570874 -97711615 - L2 LINE L2 -18 3295 3154 2570 108 16 0 chr12 46570874 46571243 -97711246 + THE1C LTR MaLR 1 375 0 272 298 57 75 chr12 46571243 46571360 -97711129 - L2 LINE L2 -159 3154 3036 309 291 140 14 chr12 46571376 46571587 -97710902 + MIR SINE MIR 8 248 -14 196 373 66 57 chr12 46572027 46572271 -97710218 + L2 LINE L2 2980 3225 -47 410 336 15 0 chr12 46572909 46573043 -97709446 - MIR SINE MIR -70 192 57 500 299 69 7 chr12 46573621 46573765 -97708724 + MIR SINE MIR 4 156 -106 889 235 53 90 chr12 46574563 46574942 -97707547 - MLT1A1 LTR MaLR 0 365 1 611 337 43 12 chr12 46575672 46575930 -97706559 + L3 LINE CR1 480 745 -832 207 100 0 0 chr12 46575947 46575977 -97706512 + (CA)n Simple_repeat Simple_repeat 2 31 0 271 186 85 0 chr12 46576286 46576345 -97706144 - LTR67 LTR ERVL -2 555 492 231 271 52 42 chr12 46576689 46576785 -97705704 - MLT2F LTR ERVL -529 134 38 241 272 62 41 chr12 46576935 46577178 -97705311 + L1MB3 LINE L1 4182 4429 -1717 21 71 0 0 chr12 46577321 46577363 -97705126 + AT_rich Low_complexity Low_complexity 1 42 0 252 307 66 7 chr12 46577744 46577881 -97704608 + L1MB3 LINE L1 5317 5461 -2347 371 219 42 42 chr12 46578268 46578288 -97704201 - L1MA4A LINE L1 -3 6300 6281 2197 179 26 67 chr12 46578288 46578497 -97703992 - L1PB4 LINE L1 -1 6155 5939 1586 179 35 41 chr12 46578497 46578787 -97703702 - AluJb SINE Alu -24 288 1 2197 179 26 67 chr12 46578787 46579069 -97703420 - L1PB4 LINE L1 -217 5939 5684 906 130 9 126 chr12 46580349 46580564 -97701925 - AluSx SINE Alu -9 301 112 1059 98 0 0 chr12 46580605 46580738 -97701751 - AluSx SINE Alu -179 133 1 1482 177 16 7 chr12 46580929 46581234 -97701255 + L1MB3 LINE L1 5874 6181 -2 663 270 17 6 chr12 46581795 46581969 -97700520 + MER45A DNA AcHobo 1 176 -2 328 239 73 101 chr12 46582825 46583043 -97699446 + MIR SINE MIR 7 218 -44 286 264 23 23 chr12 46583413 46583500 -97698989 - MIR3 SINE MIR -5 203 117 318 325 53 9 chr12 46585317 46585431 -97697058 + MER5B DNA MER1_type 8 126 -52 390 326 69 14 chr12 46587250 46587394 -97695095 - L2 LINE L2 0 3272 3121 237 98 0 0 chr12 46587671 46587712 -97694777 - L1MA3 LINE L1 0 6305 6265 6521 118 36 4 chr12 46587764 46589129 -97693360 - L1MA2 LINE L1 -28 6276 4868 969 70 0 0 chr12 46589610 46589738 -97692751 + L1MA2 LINE L1 6173 6300 -4 233 0 62 0 chr12 46589749 46589781 -97692708 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 10623 23 4 0 chr12 46589787 46591806 -97690683 - L1PA4 LINE L1 -6 6149 4125 4014 25 0 0 chr12 46591806 46592282 -97690207 + L1PA4 LINE L1 3642 4117 -2029 30 0 0 0 chr12 46592282 46592312 -97690177 + AT_rich Low_complexity Low_complexity 1 30 0 362 341 123 49 chr12 46594124 46594920 -97687569 + L2 LINE L2 2409 3272 0 206 284 17 86 chr12 46594936 46595052 -97687437 + L3 LINE CR1 1302 1409 -168 4713 128 17 4 chr12 46595065 46595812 -97686677 + L1PA16 LINE L1 5401 6157 -9 22 35 0 0 chr12 46595812 46595841 -97686648 + AT_rich Low_complexity Low_complexity 1 29 0 248 283 164 26 chr12 46595844 46595996 -97686493 + L3 LINE CR1 1402 1574 -3 358 289 150 26 chr12 46596860 46597206 -97685283 - L1ME4a LINE L1 -128 5993 5605 2009 116 46 0 chr12 46597783 46598067 -97684422 + AluSx SINE Alu 1 297 -15 414 257 73 15 chr12 46598929 46599065 -97683424 + L2 LINE L2 3164 3307 -6 286 347 58 33 chr12 46599360 46599481 -97683008 + L2 LINE L2 3118 3241 -31 378 279 172 45 chr12 46599789 46600033 -97682456 + L2 LINE L2 3034 3308 -5 1167 118 0 53 chr12 46600316 46600503 -97681986 - AluSg/x SINE Alu 0 312 136 477 338 26 30 chr12 46600607 46600841 -97681648 + MIR SINE MIR 30 262 0 23 54 0 0 chr12 46602034 46602071 -97680418 + AT_rich Low_complexity Low_complexity 1 37 0 473 285 120 20 chr12 46602981 46603181 -97679308 + MIR SINE MIR 37 256 -6 198 0 0 0 chr12 46603237 46603259 -97679230 + (TTA)n Simple_repeat Simple_repeat 3 24 0 655 13 0 0 chr12 46603259 46603335 -97679154 - L1PA5 LINE L1 -18 6136 6061 2026 272 138 16 chr12 46604630 46605478 -97677011 + L2 LINE L2 1728 2678 -636 808 297 50 21 chr12 46605451 46605828 -97676661 + L2 LINE L2 2824 3211 -102 * 187 333 11 46 chr12 46605844 46605931 -97676558 - L3 LINE CR1 -1 1576 1493 2036 112 0 30 chr12 46607988 46608284 -97674205 - AluSx SINE Alu -6 306 20 518 236 115 32 chr12 46608320 46608477 -97674012 - L2 LINE L2 0 3313 3144 183 129 0 0 chr12 46610082 46610113 -97672376 + (A)n Simple_repeat Simple_repeat 1 31 0 349 299 140 27 chr12 46610252 46610374 -97672115 + MIR SINE MIR 2 109 -153 706 134 8 0 chr12 46610374 46610493 -97671996 + L1MA9 LINE L1 6183 6302 -10 349 299 140 27 chr12 46610493 46610591 -97671898 + MIR SINE MIR 109 247 -15 2374 103 0 0 chr12 46611257 46611567 -97670922 - AluSx SINE Alu -2 310 1 426 39 0 0 chr12 46612102 46612154 -97670335 + (TG)n Simple_repeat Simple_repeat 1 52 0 258 32 0 0 chr12 46612494 46612525 -97669964 + (TTA)n Simple_repeat Simple_repeat 2 32 0 377 302 77 12 chr12 46614250 46614419 -97668070 - MLT1J1 LTR MaLR -3 443 264 327 294 28 72 chr12 46614425 46614605 -97667884 - MLT1J2 LTR MaLR -220 230 59 570 295 12 0 chr12 46615837 46616003 -97666486 - MER69A DNA AcHobo -2 175 8 419 293 16 16 chr12 46616213 46616336 -97666153 - MER5A DNA MER1_type -30 159 37 742 185 15 0 chr12 46616487 46616617 -97665872 + AluJ SINE Alu 1 132 -170 491 91 26 0 chr12 46616619 46616696 -97665793 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 1046 142 0 0 chr12 46616699 46616847 -97665642 + AluJ SINE Alu 141 288 -24 447 289 33 22 chr12 46617381 46617561 -97664928 - MER5A DNA MER1_type 0 189 8 793 263 31 0 chr12 46618016 46618211 -97664278 + MIR SINE MIR 43 247 -15 257 327 73 18 chr12 46619975 46620085 -97662404 - L2 LINE L2 -10 3262 3147 350 237 0 65 chr12 46621447 46621540 -97660949 - MIR3 SINE MIR -3 205 119 310 231 90 30 chr12 46622320 46622454 -97660035 - MIR SINE MIR 0 262 121 386 339 55 12 chr12 46622491 46622656 -97659833 - MIR3 SINE MIR -14 194 23 959 180 12 0 chr12 46622939 46623100 -97659389 + AluJo SINE Alu 136 298 -14 530 265 122 16 chr12 46624086 46624275 -97658214 - MIR SINE MIR -1 261 53 190 114 0 57 chr12 46624549 46624584 -97657905 - MIR SINE MIR -84 178 146 27 0 0 0 chr12 46624605 46624632 -97657857 + AT_rich Low_complexity Low_complexity 1 27 0 30 59 0 0 chr12 46624798 46624849 -97657640 + AT_rich Low_complexity Low_complexity 1 51 0 297 0 0 0 chr12 46627685 46627718 -97654771 + (CA)n Simple_repeat Simple_repeat 2 34 0 29 47 0 0 chr12 46628117 46628160 -97654329 + AT_rich Low_complexity Low_complexity 1 43 0 218 200 0 0 chr12 46629968 46630008 -97652481 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 2108 28 0 0 chr12 46630008 46630257 -97652232 - L1PA4 LINE L1 0 6155 5907 456 259 20 80 chr12 46630880 46631081 -97651408 - MIR SINE MIR -41 221 33 331 307 87 55 chr12 46632752 46633006 -97649483 + L2 LINE L2 2490 2751 -563 1028 282 93 19 chr12 46633044 46633420 -97649069 - MLT1J2 LTR MaLR -35 415 12 294 272 66 66 chr12 46633422 46633558 -97648931 - MER5B DNA MER1_type -41 137 2 2271 101 16 0 chr12 46634057 46634364 -97648125 + AluSx SINE Alu 1 312 0 219 146 0 0 chr12 46635564 46635605 -97646884 + (T)n Simple_repeat Simple_repeat 1 41 0 566 130 23 30 chr12 46636447 46636578 -97645911 + L1MA7 LINE L1 6161 6290 -1 404 291 32 38 chr12 46636599 46636757 -97645732 - L2 LINE L2 -473 2841 2685 541 285 70 17 chr12 46637288 46637460 -97645029 + LTR16A LTR ERVL 1 181 -269 352 320 16 0 chr12 46637464 46637592 -97644897 + HERV16 LTR ERVL 1178 1307 -3689 272 325 0 0 chr12 46637590 46637667 -97644822 + HERV16 LTR ERVL 2454 2530 -3234 * 682 288 49 15 chr12 46637881 46638145 -97644344 + HERV16 LTR ERVL 1593 1865 -3131 491 193 75 67 chr12 46638182 46638476 -97644013 - MSTC LTR MaLR -83 345 1 2734 351 44 34 chr12 46638503 46639458 -97643031 + HERV16 LTR ERVL 2057 3001 -2763 2285 107 72 17 chr12 46639458 46639803 -97642686 - THE1B LTR MaLR 0 364 1 2734 351 44 34 chr12 46639803 46640739 -97641750 + HERV16 LTR ERVL 3001 3966 -1798 227 79 26 0 chr12 46641844 46641882 -97640607 + (CA)n Simple_repeat Simple_repeat 2 40 0 201 224 0 0 chr12 46642100 46642158 -97640331 + (TGAA)n Simple_repeat Simple_repeat 4 61 0 439 306 73 10 chr12 46642826 46643032 -97639457 - MIR SINE MIR -7 255 37 2490 54 0 3 chr12 46644093 46644388 -97638101 + AluY SINE Alu 3 296 -15 1585 176 17 35 chr12 46644864 46645154 -97637335 - AluJo SINE Alu -21 291 7 180 0 0 0 chr12 46645166 46645186 -97637303 + (T)n Simple_repeat Simple_repeat 1 20 0 295 303 204 43 chr12 46645200 46645793 -97636696 + L2 LINE L2 2500 3191 -81 231 269 154 19 chr12 46645982 46646086 -97636403 - MER5A DNA MER1_type -56 133 16 1651 169 11 18 chr12 46646529 46646847 -97635642 + AluSx SINE Alu 1 316 0 3668 207 93 142 chr12 46646886 46648906 -97633583 + L1MCa LINE L1 3 2065 -4499 334 185 131 62 chr12 46648911 46649041 -97633448 + L1MCa LINE L1 2416 2554 -4010 467 165 0 22 chr12 46649042 46649133 -97633356 - MLT1A2 LTR MaLR 0 374 286 256 188 0 29 chr12 46649149 46649218 -97633271 - MER4-int LTR ERV1 -5418 1180 1114 2130 260 80 18 chr12 46649218 46650131 -97632358 + L1MCa LINE L1 2694 3663 -2901 762 177 64 18 chr12 46650132 46650460 -97632029 - MSTC LTR MaLR 0 428 1 3236 286 103 25 chr12 46650460 46652352 -97630137 + L1MCa LINE L1 3660 5698 -866 2533 165 5 2 chr12 46652356 46652798 -97629691 - L1PA15 LINE L1 -7 7577 7135 1828 166 12 12 chr12 46652854 46653198 -97629291 - L1PA15 LINE L1 -451 7133 6790 * 6525 217 13 17 chr12 46653197 46653676 -97628813 - L1PA15 LINE L1 -1356 6209 5730 2500 89 0 9 chr12 46653676 46654024 -97628465 + L1PA8 LINE L1 5828 6172 0 6525 217 13 17 chr12 46654024 46655066 -97627423 - L1PA15 LINE L1 -1835 5730 4694 5500 122 13 7 chr12 46655063 46655898 -97626591 - L1PA15 LINE L1 -5 6160 5321 * 3465 239 81 4 chr12 46655901 46656971 -97625518 - L1PA15 LINE L1 -2916 4649 3496 2458 46 0 0 chr12 46657527 46657873 -97624616 + AluY SINE Alu 1 346 0 246 62 0 0 chr12 46657958 46657990 -97624499 + (TG)n Simple_repeat Simple_repeat 1 32 0 734 159 8 8 chr12 46657990 46658108 -97624381 + MIR SINE MIR 85 205 -57 251 341 82 7 chr12 46658242 46658377 -97624112 + L2 LINE L2 2210 2354 -960 37 52 0 0 chr12 46658618 46658676 -97623813 + AT_rich Low_complexity Low_complexity 1 58 0 1037 235 47 24 chr12 46659707 46659962 -97622527 - MIR SINE MIR -1 261 1 192 265 20 0 chr12 46660048 46660097 -97622392 + MIR SINE MIR 148 197 -65 993 279 71 52 chr12 46660149 46660611 -97621878 + L2 LINE L2 2842 3312 -1 295 349 108 28 chr12 46660608 46660932 -97621557 + L2 LINE L2 2962 3311 -2 * 1265 239 128 38 chr12 46661059 46661536 -97620953 + MLT2B1 LTR ERVL 1 520 0 373 312 41 24 chr12 46663487 46663657 -97618832 + MIR SINE MIR 80 252 -10 452 293 6 33 chr12 46663969 46664150 -97618339 + L2 LINE L2 3134 3309 -4 2015 198 132 78 chr12 46664813 46665735 -97616754 + L1ME2 LINE L1 5160 6150 -14 808 292 148 10 chr12 46666025 46666409 -97616080 - L2 LINE L2 -8 3305 2869 419 212 220 23 chr12 46666488 46666620 -97615869 - MER5A DNA MER1_type -2 187 30 546 335 48 13 chr12 46666696 46666923 -97615566 - L2 LINE L2 -652 2662 2428 3361 294 108 16 chr12 46666926 46668410 -97614079 - L2 LINE L2 -1029 2285 664 198 0 0 0 chr12 46668441 46668463 -97614026 + (TG)n Simple_repeat Simple_repeat 2 23 0 210 136 68 17 chr12 46668463 46668503 -97613986 + (TA)n Simple_repeat Simple_repeat 2 47 -16 558 45 0 0 chr12 46668503 46668570 -97613919 + L1PA7 LINE L1 6071 6137 -17 210 136 68 17 chr12 46668570 46668588 -97613901 + (TA)n Simple_repeat Simple_repeat 47 63 0 368 87 130 0 chr12 46668605 46668674 -97613815 + L1PA12 LINE L1 6078 6155 -13 233 102 68 0 chr12 46668675 46668734 -97613755 + (TA)n Simple_repeat Simple_repeat 2 64 0 1819 234 34 28 chr12 46668736 46669237 -97613252 - MLT1D LTR MaLR -1 504 1 229 301 58 34 chr12 46669615 46669821 -97612668 - HAL1b LINE L1 -837 511 301 379 297 135 43 chr12 46670819 46671004 -97611485 - MIR SINE MIR -56 206 5 1755 149 12 19 chr12 46671101 46671422 -97611067 - L1PA16 LINE L1 -24 6142 5825 1737 149 98 3 chr12 46672331 46672627 -97609862 + MSTB LTR MaLR 1 324 -102 484 125 0 38 chr12 46672634 46672714 -97609775 + L1PA15-16 LINE L1 1536 1612 -5237 4505 114 6 5 chr12 46672714 46673383 -97609106 + L1PA16 LINE L1 5497 6166 0 921 166 6 0 chr12 46673411 46673586 -97608903 + L1MA3 LINE L1 6130 6305 0 1643 176 108 35 chr12 46674168 46674594 -97607895 + MSTB2 LTR MaLR 1 457 0 180 0 0 0 chr12 46675393 46675413 -97607076 + (A)n Simple_repeat Simple_repeat 1 20 0 214 239 0 56 chr12 46675531 46675602 -97606887 + L2 LINE L2 3247 3313 0 600 293 32 59 chr12 46676030 46676283 -97606206 + MIR SINE MIR 14 259 -3 294 311 175 6 chr12 46676605 46676782 -97605707 + L2 LINE L2 2397 2603 -711 350 295 110 17 chr12 46676832 46677005 -97605484 + L2 LINE L2 2931 3119 -194 1486 230 25 6 chr12 46677010 46677366 -97605123 + MLT1A2 LTR MaLR 1 363 -11 320 287 28 28 chr12 46677462 46677570 -97604919 + L2 LINE L2 3204 3311 -2 27 0 0 0 chr12 46679180 46679207 -97603282 + AT_rich Low_complexity Low_complexity 1 27 0 199 292 0 0 chr12 46679307 46679355 -97603134 - MIR SINE MIR -116 146 99 21 0 0 0 chr12 46680600 46680621 -97601868 + AT_rich Low_complexity Low_complexity 1 21 0 276 250 48 8 chr12 46680657 46680781 -97601708 + (TA)n Simple_repeat Simple_repeat 2 130 0 327 255 55 62 chr12 46681590 46681735 -97600754 + MIR SINE MIR 62 205 -57 1036 116 0 0 chr12 46682791 46682938 -97599551 + AluSc SINE Alu 160 306 -3 215 299 10 72 chr12 46683632 46683729 -97598760 + L2 LINE L2 3168 3258 -14 262 252 52 43 chr12 46684199 46684314 -97598175 + L1ME LINE L1 51 166 -5953 1583 174 24 30 chr12 46684652 46684950 -97597539 + AluJb SINE Alu 1 296 -16 421 331 37 57 chr12 46684950 46685195 -97597294 + L1ME LINE L1 569 808 -5311 28 0 0 0 chr12 46685206 46685234 -97597255 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr12 46685742 46685789 -97596700 + AT_rich Low_complexity Low_complexity 1 47 0 213 132 0 0 chr12 46686541 46686579 -97595910 + (TC)n Simple_repeat Simple_repeat 1 38 0 190 328 82 0 chr12 46687237 46687298 -97595191 + L2 LINE L2 3146 3211 -61 1398 148 5 0 chr12 46687313 46687536 -97594953 + MER34B LTR ERV1 1 224 -341 2612 92 102 15 chr12 46687536 46687948 -97594541 + LTR7 LTR ERV1 1 448 -2 2913 98 2 21 chr12 46687950 46688418 -97594071 + HERVH LTR ERV1 1 459 -7254 13974 95 13 20 chr12 46688472 46690683 -97591806 + HERVH LTR ERV1 793 2987 -4726 936 120 7 0 chr12 46690677 46690827 -97591662 + HERVH LTR ERV1 3140 3290 -4423 * 7371 124 13 7 chr12 46690817 46692529 -97589960 + HERVH LTR ERV1 3492 5149 -2564 1215 120 17 73 chr12 46692530 46692763 -97589726 + HERVH LTR ERV1 5600 5819 -1894 2249 96 48 13 chr12 46692763 46693140 -97589349 + HERVH LTR ERV1 7324 7713 0 2770 82 92 5 chr12 46693140 46693552 -97588937 + LTR7 LTR ERV1 1 448 -2 1511 153 68 6 chr12 46693554 46693875 -97588614 + MER34B LTR ERV1 220 560 -5 1915 165 117 7 chr12 46694054 46694473 -97588016 + MLT1C LTR MaLR 1 465 -2 463 267 75 113 chr12 46694749 46695244 -97587245 - L2 LINE L2 0 3313 2838 322 282 87 0 chr12 46696600 46696703 -97585786 - MIR3 SINE MIR -15 193 82 196 213 85 0 chr12 46696883 46696930 -97585559 + MIR SINE MIR 212 262 0 484 319 17 0 chr12 46697562 46697678 -97584811 + L2 LINE L2 3155 3272 0 340 267 281 7 chr12 46698480 46698626 -97583863 + MIR SINE MIR 63 248 -14 1058 83 28 5 chr12 46698953 46699171 -97583318 + (GAAA)n Simple_repeat Simple_repeat 1 222 0 21 0 0 0 chr12 46699359 46699380 -97583109 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr12 46699968 46699995 -97582494 + AT_rich Low_complexity Low_complexity 1 27 0 377 263 91 0 chr12 46700328 46700526 -97581963 + L1MEc LINE L1 1260 1475 -4921 457 329 92 4 chr12 46700705 46700954 -97581535 + L1MEc LINE L1 2266 2536 -3679 1020 290 45 55 chr12 46702529 46703206 -97579283 - L2 LINE L2 -73 3240 2570 1388 198 86 46 chr12 46703206 46703601 -97578888 - LTR52 LTR ERVL -3 418 8 212 267 43 43 chr12 46703609 46703725 -97578764 - L2 LINE L2 -745 2569 2454 26 50 0 0 chr12 46703745 46703785 -97578704 + AT_rich Low_complexity Low_complexity 1 40 0 1782 148 44 35 chr12 46703982 46704153 -97578336 - MER7A DNA MER2_type -2693 345 177 2614 136 29 7 chr12 46704153 46704572 -97577917 + MSTA LTR MaLR 1 428 0 8565 176 36 14 chr12 46704572 46706187 -97576302 + MSTA-int LTR MaLR 1 1651 0 2195 169 44 7 chr12 46706187 46706600 -97575889 + MSTA LTR MaLR 1 428 0 1782 148 44 35 chr12 46706600 46706770 -97575719 - MER7A DNA MER2_type -2860 178 1 247 301 87 39 chr12 46707042 46707145 -97575344 + MIR3 SINE MIR 49 156 -52 29 47 0 0 chr12 46707348 46707391 -97575098 + AT_rich Low_complexity Low_complexity 1 43 0 2219 89 13 10 chr12 46707625 46707938 -97574551 + L1PA8 LINE L1 5847 6160 -12 318 200 0 100 chr12 46707957 46708057 -97574432 - L1MC4 LINE L1 -1339 6703 6614 341 91 0 18 chr12 46708119 46708174 -97574315 + (TA)n Simple_repeat Simple_repeat 2 55 0 1054 219 54 27 chr12 46708558 46708892 -97573597 - L1 LINE L1 -3491 4074 3732 2333 124 10 7 chr12 46708898 46709302 -97573187 - L1 LINE L1 -3940 3625 3221 644 78 0 3 chr12 46709296 46709315 -97573174 - L1P4 LINE L1 -638 5525 5507 * 3861 123 2 2 chr12 46709315 46709894 -97572595 - L1PA13 LINE L1 -19 6144 5566 644 78 0 3 chr12 46709894 46709981 -97572508 - L1P4 LINE L1 -656 5507 5421 4584 186 11 8 chr12 46709982 46710944 -97571545 - L1PA13 LINE L1 -3507 3290 2326 1143 130 0 0 chr12 46710948 46711140 -97571349 - L1PA13 LINE L1 -4662 2125 1934 * 5050 107 34 50 chr12 46711139 46711638 -97570851 - L1 LINE L1 -4322 3243 2768 1699 111 8 8 chr12 46711638 46711873 -97570616 - AluSq SINE Alu -78 235 1 5050 107 34 50 chr12 46711873 46712387 -97570102 - L1 LINE L1 -4797 2768 2247 2823 221 3 14 chr12 46712379 46712946 -97569543 - L1 LINE L1 -5732 1833 1273 * 4227 123 10 5 chr12 46712955 46713564 -97568925 + LTR9 LTR ERV1 1 612 0 9452 136 20 35 chr12 46713579 46715243 -97567246 + HUERS-P3 LTR ERV1 15 1652 -7267 735 139 0 0 chr12 46715240 46715355 -97567134 + HUERS-P3 LTR ERV1 1791 1905 -7014 * 10786 138 3 12 chr12 46715398 46717213 -97565276 + HUERS-P3 LTR ERV1 2082 3975 -4944 13364 114 1 6 chr12 46717219 46719170 -97563319 + HUERS-P3 LTR ERV1 4230 6171 -2748 3419 206 57 16 chr12 46719191 46719940 -97562549 - L1 LINE L1 -6778 787 8 2480 132 11 3 chr12 46720034 46720406 -97562083 - THE1C LTR MaLR 0 375 1 9436 120 50 40 chr12 46720406 46721971 -97560518 - THE1C-int LTR MaLR 0 1580 1 2700 107 8 5 chr12 46721971 46722345 -97560144 - THE1C LTR MaLR 0 375 1 316 242 116 11 chr12 46722553 46722648 -97559841 + L2 LINE L2 3168 3272 0 205 278 10 113 chr12 46724020 46724117 -97558372 - L2 LINE L2 -40 3273 3187 243 286 75 68 chr12 46724966 46725099 -97557390 + MER5A DNA MER1_type 56 189 0 29 28 0 0 chr12 46725150 46725186 -97557303 + AT_rich Low_complexity Low_complexity 1 36 0 414 276 63 35 chr12 46725866 46726040 -97556449 - MLT1J2 LTR MaLR 0 450 272 1261 137 63 18 chr12 46726058 46726342 -97556147 - Cheshire DNA MER1_type 0 2420 2124 7811 186 16 3 chr12 46727259 46729658 -97552831 - L1PA8 LINE L1 -9 6163 3742 2520 152 13 3 chr12 46729855 46730663 -97551826 - L1M1 LINE L1 -621 5683 4868 906 86 0 0 chr12 46731144 46731272 -97551217 + L1MA2 LINE L1 6173 6300 -4 233 0 62 0 chr12 46731283 46731315 -97551174 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5054 40 2 0 chr12 46731321 46731928 -97550561 - L1PA4 LINE L1 -6 6149 5542 1133 60 18 0 chr12 46731928 46732094 -97550395 + L1P1 LINE L1 5282 5450 -705 303 312 52 45 chr12 46732143 46732297 -97550192 + L1ME4a LINE L1 5741 5895 -226 30 45 0 0 chr12 46733186 46733230 -97549259 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr12 46735916 46735959 -97546530 + AT_rich Low_complexity Low_complexity 1 43 0 26 50 0 0 chr12 46736010 46736050 -97546439 + AT_rich Low_complexity Low_complexity 1 40 0 2069 120 0 13 chr12 46737238 46737539 -97544950 + AluSx SINE Alu 1 297 -15 10008 27 4 1 chr12 46738362 46739961 -97542528 - L1P2 LINE L1 -425 5729 4125 302 81 0 135 chr12 46739962 46740073 -97542416 + L1P LINE L1 3642 3737 -2409 21 36 0 0 chr12 46740578 46740606 -97541883 + AT_rich Low_complexity Low_complexity 1 28 0 359 261 103 44 chr12 46740913 46741116 -97541373 + MIR SINE MIR 47 261 -1 583 195 74 0 chr12 46741339 46741488 -97541001 - MER33 DNA MER1_type -156 168 9 321 298 0 41 chr12 46742200 46742321 -97540168 - L1M LINE L1 -2438 5370 5255 2206 122 3 3 chr12 46742561 46742872 -97539617 + AluSx SINE Alu 1 311 -1 389 326 69 14 chr12 46745095 46745239 -97537250 - L2 LINE L2 0 3272 3121 503 98 0 147 chr12 46745634 46745736 -97536753 - AluSq SINE Alu -113 200 114 1074 98 0 0 chr12 46745777 46745910 -97536579 - AluSq SINE Alu -179 133 1 1405 178 20 7 chr12 46746101 46746405 -97536084 + L1MB3 LINE L1 5874 6181 -2 3095 198 26 31 chr12 46747786 46749163 -97533326 - L1MB7 LINE L1 -128 6056 4583 229 414 100 0 chr12 46750316 46750456 -97532033 - L2 LINE L2 -8 3264 3111 2175 99 3 0 chr12 46751186 46751468 -97531021 - AluSp SINE Alu -30 283 1 440 246 77 100 chr12 46751978 46752238 -97530251 + MIR SINE MIR 1 254 -8 199 363 178 17 chr12 46753797 46754219 -97528270 + L2 LINE L2 2409 2898 -416 1640 158 3 3 chr12 46754897 46755181 -97527308 + MLT1B LTR MaLR 107 390 0 1686 126 3 86 chr12 46755484 46755785 -97526704 + AluSx SINE Alu 37 312 0 183 80 0 0 chr12 46756245 46756270 -97526219 + (A)n Simple_repeat Simple_repeat 1 25 0 4098 147 16 24 chr12 46756270 46757119 -97525370 + L1PA15-16 LINE L1 1930 2772 -4077 334 359 0 0 chr12 46757377 46757533 -97524956 + A-rich Low_complexity Low_complexity 1 156 0 849 232 102 36 chr12 46758112 46758357 -97524132 + MLT1E1 LTR MaLR 3 251 -373 2469 77 7 0 chr12 46758357 46758657 -97523832 + AluSg SINE Alu 1 302 -8 849 232 102 36 chr12 46758657 46758870 -97523619 + MLT1E1 LTR MaLR 251 449 -175 26 0 0 0 chr12 46759270 46759296 -97523193 + AT_rich Low_complexity Low_complexity 1 26 0 308 300 81 33 chr12 46759518 46759851 -97522638 + L1ME LINE L1 5329 5677 -444 2639 148 38 20 chr12 46759855 46760465 -97522024 - L1PA4 LINE L1 -7 6148 5528 2102 153 14 10 chr12 46761857 46762275 -97520214 - L1P4 LINE L1 -345 5821 5402 312 368 7 7 chr12 46762340 46762495 -97519994 + C-rich Low_complexity Low_complexity 2 156 0 323 226 9 38 chr12 46762571 46762677 -97519812 + CT-rich Low_complexity Low_complexity 3 105 0 1646 88 5 9 chr12 46763026 46763243 -97519246 - AluSc SINE Alu -93 216 1 2229 139 0 3 chr12 46764210 46764520 -97517969 + AluSx SINE Alu 1 309 -3 244 333 31 0 chr12 46764596 46764692 -97517797 + MIR SINE MIR 103 201 -61 978 138 0 0 chr12 46765598 46765736 -97516753 - AluJb SINE Alu -24 288 151 390 286 71 21 chr12 46765739 46765879 -97516610 + LTR16A LTR ERVL 1 147 -303 336 321 15 0 chr12 46765910 46766047 -97516442 + HERV16 LTR ERVL 1169 1307 -3689 5635 205 76 15 chr12 46766693 46766793 -97515696 - Cheshire DNA MER1_type -348 2072 1979 2326 82 0 7 chr12 46766793 46767122 -97515367 + AluY SINE Alu 1 311 0 5635 205 76 15 chr12 46767122 46768443 -97514046 - Cheshire DNA MER1_type -441 1979 565 1410 224 133 33 chr12 46768443 46768902 -97513587 - MLT1D LTR MaLR 0 505 1 * 1521 225 54 58 chr12 46768902 46769422 -97513067 - Cheshire DNA MER1_type -1873 547 30 607 250 50 6 chr12 46769483 46769643 -97512846 - MLT1J2 LTR MaLR -283 167 1 357 200 0 0 chr12 46770834 46770909 -97511580 - MLT1J2 LTR MaLR -24 426 352 2237 129 9 0 chr12 46771985 46772325 -97510164 - MSTA LTR MaLR 0 428 86 3663 152 14 66 chr12 46772325 46773142 -97509347 - LTR1 LTR ERV1 0 785 12 423 149 35 11 chr12 46773149 46773236 -97509253 - MSTA LTR MaLR -339 89 1 273 264 0 11 chr12 46773601 46773688 -97508801 + MER117 DNA MER1_type 81 166 -31 504 248 66 0 chr12 46773892 46774029 -97508460 - MIR SINE MIR 0 262 117 827 242 54 0 chr12 46774584 46774770 -97507719 + MER58A DNA MER1_type 2 197 -27 228 385 18 0 chr12 46775835 46775944 -97506545 + L3 LINE CR1 1043 1153 -424 206 289 74 95 chr12 46775990 46776180 -97506309 + L3 LINE CR1 1278 1463 -114 266 281 91 45 chr12 46776379 46776621 -97505868 + L1ME LINE L1 5312 5564 -557 200 216 29 39 chr12 46777162 46777264 -97505225 + (TA)n Simple_repeat Simple_repeat 1 101 0 29 60 0 0 chr12 46777500 46777550 -97504939 + AT_rich Low_complexity Low_complexity 1 50 0 988 68 95 0 chr12 46777584 46777731 -97504758 - LTR12 LTR ERV1 0 714 554 5714 145 107 115 chr12 46777731 46779456 -97503033 + pTR5 LTR ERV1 743 2438 0 3839 178 150 22 chr12 46779457 46780570 -97501919 - LTR12 LTR ERV1 -22 1523 1 576 209 104 11 chr12 46780570 46780752 -97501737 - L1ME3A LINE L1 -289 5881 5683 910 186 62 5 chr12 46780777 46780970 -97501519 + MER3 DNA MER1_type 6 209 0 405 279 66 24 chr12 46780979 46781320 -97501169 - L1ME3A LINE L1 -537 5647 5286 282 56 0 0 chr12 46781320 46781356 -97501133 + (TA)n Simple_repeat Simple_repeat 2 37 0 405 279 66 24 chr12 46781356 46781368 -97501121 - L1ME3A LINE L1 -898 5286 5276 24 32 0 0 chr12 46781401 46781432 -97501057 + AT_rich Low_complexity Low_complexity 1 31 0 364 282 48 68 chr12 46781558 46781806 -97500683 - L1ME3A LINE L1 -1299 4847 4605 708 253 151 57 chr12 46781891 46782508 -97499981 + L2 LINE L2 2567 3211 -102 249 33 0 0 chr12 46783792 46783822 -97498667 + (T)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr12 46784377 46784405 -97498084 + (CA)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr12 46784835 46784858 -97497631 + AT_rich Low_complexity Low_complexity 1 23 0 24 91 0 0 chr12 46785002 46785068 -97497421 + AT_rich Low_complexity Low_complexity 1 66 0 971 272 80 38 chr12 46785128 46785628 -97496861 - LTR33 LTR ERVL 0 521 1 305 346 99 40 chr12 46786753 46786921 -97495568 - L2 LINE L2 -19 3294 3137 1573 197 24 53 chr12 46786921 46787297 -97495192 + MLT1A1 LTR MaLR 1 365 0 305 346 99 40 chr12 46787297 46787481 -97495008 - L2 LINE L2 -176 3137 2921 770 294 18 13 chr12 46787715 46787943 -97494546 - MIR SINE MIR -12 250 22 720 316 109 13 chr12 46788809 46789276 -97493213 + L1ME LINE L1 42 531 -5539 5632 148 36 11 chr12 46789306 46790626 -97491863 + L1MA5 LINE L1 4954 6300 0 2057 273 55 36 chr12 46790808 46791869 -97490620 + L1ME LINE L1 536 1666 -4595 1701 120 37 91 chr12 46791869 46792219 -97490270 + MER44D DNA MER2_type 1 601 -8 1082 279 78 16 chr12 46792228 46792927 -97489562 + L1ME LINE L1 1665 2371 -3709 530 287 55 10 chr12 46792919 46793157 -97489332 + L1ME2 LINE L1 5888 6160 -2 * 398 21 0 0 chr12 46793543 46793591 -97488898 - L1PA6 LINE L1 -5 6149 6102 22 35 0 0 chr12 46793591 46793620 -97488869 + AT_rich Low_complexity Low_complexity 1 29 0 288 273 70 29 chr12 46793703 46793875 -97488614 - L1ME LINE L1 -315 5806 5628 22 0 0 0 chr12 46794035 46794057 -97488432 + AT_rich Low_complexity Low_complexity 1 22 0 627 239 94 0 chr12 46794192 46794330 -97488159 - FRAM SINE Alu -15 151 1 42 20 0 0 chr12 46794528 46794577 -97487912 + AT_rich Low_complexity Low_complexity 1 49 0 438 20 0 0 chr12 46794885 46794936 -97487553 + (TC)n Simple_repeat Simple_repeat 1 51 0 721 158 53 0 chr12 46794960 46795093 -97487396 + MSTA LTR MaLR 289 428 0 937 180 0 0 chr12 46795094 46795255 -97487234 + MER3 DNA MER1_type 49 209 0 225 281 62 16 chr12 46795287 46795351 -97487138 + L2 LINE L2 3167 3233 -39 2460 63 0 3 chr12 46795760 46796059 -97486430 - AluY SINE Alu -13 298 1 2327 15 0 0 chr12 46798799 46799060 -97483429 + AluYa5 SINE Alu 37 297 -14 201 74 0 0 chr12 46799741 46799768 -97482721 + (CA)n Simple_repeat Simple_repeat 2 28 0 1276 234 77 22 chr12 46800376 46800777 -97481712 + L1ME1 LINE L1 5740 6162 -4 21 0 0 0 chr12 46802358 46802379 -97480110 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 46802430 46802452 -97480037 + AT_rich Low_complexity Low_complexity 1 22 0 431 243 68 51 chr12 46803194 46803371 -97479118 + L2 LINE L2 1877 2056 -1258 382 353 79 41 chr12 46803429 46803797 -97478692 - L2 LINE L2 -338 2976 2595 743 289 40 18 chr12 46803831 46804056 -97478433 - MIR SINE MIR -31 231 2 268 340 62 45 chr12 46804121 46804409 -97478080 - L2 LINE L2 -787 2527 2235 23 33 0 0 chr12 46805265 46805295 -97477194 + AT_rich Low_complexity Low_complexity 1 30 0 2567 35 0 16 chr12 46805327 46805641 -97476848 + AluY SINE Alu 2 310 -1 3038 273 112 52 chr12 46806079 46807971 -97474518 - L2 LINE L2 -5 3308 1243 1523 203 107 87 chr12 46807972 46808503 -97473986 + MLT1F1 LTR MaLR 1 567 0 189 171 98 0 chr12 46808504 46808545 -97473944 - L2 LINE L2 -2069 1245 1201 249 370 12 0 chr12 46808547 46808628 -97473861 - L2 LINE L2 -2084 1230 1149 900 236 89 43 chr12 46810488 46810814 -97471675 + MLT1I LTR MaLR 1 341 -68 441 219 48 0 chr12 46812745 46812850 -97469639 - Tigger5 DNA MER2_type -4 2319 2210 234 250 0 18 chr12 46812837 46812893 -97469596 - Tigger5 DNA MER2_type -2268 55 1 * 353 279 48 39 chr12 46812903 46813007 -97469482 - L2 LINE L2 0 3272 3168 25 0 0 0 chr12 46813036 46813061 -97469428 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr12 46814505 46814528 -97467961 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 209 217 0 0 chr12 46814531 46814577 -97467912 + A-rich Low_complexity Low_complexity 1 46 0 222 359 12 53 chr12 46816422 46816592 -97465897 + L2 LINE L2 2916 3078 -194 474 272 156 42 chr12 46816673 46816838 -97465651 - L1M4 LINE L1 -1347 4799 4654 282 73 0 0 chr12 46816838 46816879 -97465610 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 474 272 156 42 chr12 46816879 46817073 -97465416 - L1M4 LINE L1 -1492 4654 4399 321 210 208 7 chr12 46817076 46817212 -97465277 - L1ME1 LINE L1 0 6334 6015 225 341 83 15 chr12 46817240 46817372 -97465117 + L2 LINE L2 3169 3309 -4 648 303 32 68 chr12 46818314 46818478 -97464011 + HAL1 LINE L1 776 944 -1563 2343 85 0 19 chr12 46818478 46818795 -97463694 + AluY SINE Alu 1 311 0 648 303 32 68 chr12 46818795 46819251 -97463238 + HAL1 LINE L1 944 1374 -1133 620 320 35 18 chr12 46819276 46819504 -97462985 - MIR SINE MIR -29 233 2 684 263 43 30 chr12 46819704 46819936 -97462553 + L2 LINE L2 1976 2210 -1104 509 204 79 73 chr12 46819978 46820190 -97462299 + MLT1C LTR MaLR 1 224 -243 463 237 9 9 chr12 46820235 46820349 -97462140 - MLT2E LTR ERVL 0 628 515 624 181 133 64 chr12 46820406 46820594 -97461895 + MLT1C LTR MaLR 267 467 0 884 281 121 18 chr12 46820601 46821033 -97461456 + L2 LINE L2 2238 2770 -544 464 283 17 73 chr12 46821073 46821250 -97461239 + MLT2E LTR ERVL 11 177 -451 241 235 148 40 chr12 46821699 46821848 -97460641 + HAL1 LINE L1 2165 2329 -178 702 240 62 0 chr12 46821873 46822065 -97460424 + MER105 DNA DNA 1 204 0 202 115 33 66 chr12 46822224 46822285 -97460204 + (ATATG)n Simple_repeat Simple_repeat 5 63 0 24 0 0 0 chr12 46822613 46822637 -97459852 + AT_rich Low_complexity Low_complexity 1 24 0 281 212 30 0 chr12 46822820 46822886 -97459603 + MER105 DNA DNA 137 204 0 212 292 62 15 chr12 46822904 46822969 -97459520 - L2 LINE L2 0 3313 3246 534 291 34 0 chr12 46824801 46824976 -97457513 + L1ME1 LINE L1 5732 5912 -209 246 209 104 0 chr12 46825580 46825647 -97456842 + L2 LINE L2 3231 3304 -9 1380 140 0 9 chr12 46825862 46826084 -97456405 + AluSg/x SINE Alu 88 307 -5 342 225 14 0 chr12 46826712 46826783 -97455706 + MLT1J2 LTR MaLR 1 72 -378 3559 171 42 8 chr12 46827058 46827764 -97454725 + L1MA10 LINE L1 4267 4996 -1150 505 122 12 0 chr12 46827809 46827891 -97454598 + L1MA10 LINE L1 5643 5725 -609 320 167 19 0 chr12 46827891 46827945 -97454544 - AluJb SINE Alu -131 171 117 750 153 0 0 chr12 46827949 46828108 -97454381 + AluSg/x SINE Alu 174 332 0 2557 196 43 43 chr12 46828108 46828719 -97453770 + L1MA10 LINE L1 5722 6332 -2 2579 20 0 0 chr12 46830499 46830797 -97451692 + L1HS LINE L1 5858 6155 0 718 143 16 0 chr12 46831120 46831246 -97451243 + L1MA4 LINE L1 6170 6297 -3 207 100 0 0 chr12 46831382 46831412 -97451077 + (CA)n Simple_repeat Simple_repeat 1 30 0 825 237 19 40 chr12 46831864 46832156 -97450333 + L1ME1 LINE L1 5889 6330 -4 284 261 87 11 chr12 46833709 46833801 -97448688 - L2 LINE L2 -4 3309 3211 301 332 201 23 chr12 46835095 46835758 -97446731 - L2 LINE L2 -938 2376 1596 4750 102 6 23 chr12 46835875 46836569 -97445920 + L1PA7 LINE L1 4 685 -5776 * 24073 90 6 2 chr12 46836566 46840837 -97441652 + L1PA7 LINE L1 2177 6465 -4 205 337 168 0 chr12 46842034 46842129 -97440360 - L2 LINE L2 -40 3232 3122 556 302 50 22 chr12 46842468 46842647 -97439842 + MER5A DNA MER1_type 1 184 -5 516 176 94 41 chr12 46842780 46842950 -97439539 - MER104 DNA MER2_type -1 179 1 208 340 0 21 chr12 46843018 46843112 -97439377 - L2 LINE L2 -263 3009 2918 262 319 5 43 chr12 46843119 46843228 -97439261 + MIR SINE MIR 12 119 -89 324 316 88 84 chr12 46843327 46843757 -97438732 - L2 LINE L2 -438 2876 2445 333 47 0 0 chr12 46844039 46844082 -97438407 + (CA)n Simple_repeat Simple_repeat 2 44 0 312 321 53 15 chr12 46844151 46844282 -97438207 + MIR SINE MIR 33 168 -94 2151 108 14 0 chr12 46844336 46844624 -97437865 - AluSg SINE Alu -18 292 1 271 163 33 22 chr12 46846224 46846316 -97436173 + (TA)n Simple_repeat Simple_repeat 1 93 0 4456 115 0 0 chr12 46846391 46847028 -97435461 - L1PA13 LINE L1 -2 6161 5525 23 0 0 0 chr12 46848218 46848241 -97434248 + AT_rich Low_complexity Low_complexity 1 23 0 387 313 25 31 chr12 46848976 46849136 -97433353 + L2 LINE L2 3155 3313 0 180 111 0 0 chr12 46849545 46849572 -97432917 + (TC)n Simple_repeat Simple_repeat 1 27 0 1526 198 7 30 chr12 46849658 46849961 -97432528 - AluJo SINE Alu -14 298 3 441 273 96 29 chr12 46851208 46851417 -97431072 + HAL1b LINE L1 90 312 -1036 722 140 7 29 chr12 46851568 46851704 -97430785 - AluSg/x SINE Alu -2 307 175 435 151 41 0 chr12 46851707 46851780 -97430709 - FLAM_A SINE Alu -66 76 1 23 54 0 0 chr12 46851854 46851891 -97430598 + AT_rich Low_complexity Low_complexity 1 37 0 332 248 60 27 chr12 46851910 46852059 -97430430 + HAL1b LINE L1 860 1013 -335 418 332 53 24 chr12 46852233 46852441 -97430048 + L2 LINE L2 2919 3132 -181 589 250 17 50 chr12 46852527 46852707 -97429782 + L2 LINE L2 3140 3313 0 27 0 0 0 chr12 46853003 46853030 -97429459 + AT_rich Low_complexity Low_complexity 1 27 0 196 322 0 0 chr12 46853182 46853241 -97429248 + MIR SINE MIR 194 252 -10 * 763 311 73 11 chr12 46853216 46853680 -97428809 + L2 LINE L2 2533 3033 -239 257 250 77 29 chr12 46853839 46853943 -97428546 + L2 LINE L2 3134 3242 -30 186 208 0 0 chr12 46853955 46854003 -97428486 + (CAT)n Simple_repeat Simple_repeat 2 49 0 7764 16 0 0 chr12 46854063 46854980 -97427509 - L1PA3 LINE L1 0 6155 5235 2468 61 3 16 chr12 46854980 46855292 -97427197 - AluY SINE Alu -3 308 1 196 409 98 28 chr12 46855413 46855628 -97426861 + L2 LINE L2 3040 3269 -3 182 194 0 0 chr12 46857048 46857084 -97425405 + L2 LINE L2 2217 2252 -1062 289 363 16 47 chr12 46857250 46857440 -97425049 + MIR SINE MIR 18 201 -61 2072 117 17 3 chr12 46857949 46858249 -97424240 + AluSx SINE Alu 1 304 -8 480 253 146 26 chr12 46859850 46859978 -97422511 - L2 LINE L2 -2460 854 743 2194 162 28 10 chr12 46859978 46860367 -97422122 + MSTD LTR MaLR 1 396 0 480 253 146 26 chr12 46860367 46860471 -97422018 - L2 LINE L2 -2571 743 594 282 295 164 63 chr12 46860493 46860761 -97421728 + L2 LINE L2 3019 3313 0 1835 148 0 3 chr12 46860999 46861307 -97421182 - AluJb SINE Alu 0 307 1 22 0 0 0 chr12 46862274 46862296 -97420193 + AT_rich Low_complexity Low_complexity 1 22 0 603 283 84 65 chr12 46862325 46862553 -97419936 + L1MC4a LINE L1 5520 5759 -2049 1492 103 0 0 chr12 46862553 46862748 -97419741 + AluSq SINE Alu 1 195 -118 603 283 84 65 chr12 46862748 46862890 -97419599 + L1MC4a LINE L1 5759 5897 -1911 736 201 50 0 chr12 46862979 46863118 -97419371 + MER20 DNA MER1_type 40 185 -34 270 148 0 0 chr12 46863404 46863458 -97419031 + (TA)n Simple_repeat Simple_repeat 2 55 0 204 158 0 0 chr12 46863518 46863556 -97418933 + (TA)n Simple_repeat Simple_repeat 1 38 0 27 81 0 0 chr12 46863630 46863692 -97418797 + AT_rich Low_complexity Low_complexity 1 62 0 210 314 167 10 chr12 46864027 46864129 -97418360 + L2 LINE L2 3190 3307 -6 2344 85 0 0 chr12 46864224 46864518 -97417971 + AluY SINE Alu 1 294 -17 216 0 0 0 chr12 46864518 46864542 -97417947 + (TA)n Simple_repeat Simple_repeat 2 25 0 246 296 44 82 chr12 46864795 46864930 -97417559 - L3b LINE CR1 -8 1575 1446 2355 50 0 63 chr12 46865103 46865420 -97417069 + AluY SINE Alu 1 297 -14 1033 151 13 54 chr12 46865906 46866145 -97416344 - L1MB4 LINE L1 -1 6179 5951 791 276 38 17 chr12 46866178 46866417 -97416072 - MIR SINE MIR -11 251 8 1870 95 52 4 chr12 46866618 46866897 -97415592 - AluSc SINE Alu 0 306 16 27 81 0 0 chr12 46867400 46867462 -97415027 + AT_rich Low_complexity Low_complexity 1 62 0 6382 137 16 9 chr12 46867903 46869143 -97413346 + L1MA5 LINE L1 5041 6294 -6 731 276 55 17 chr12 46869287 46869526 -97412963 + MIR SINE MIR 2 247 -15 684 204 15 15 chr12 46869957 46870094 -97412395 - MER69 DNA AcHobo -2388 138 2 1871 36 0 0 chr12 46870780 46871002 -97411487 - L1P3 LINE L1 -448 5706 5485 629 124 0 0 chr12 46870994 46871091 -97411398 - L1P LINE L1 -1383 4763 4667 * 3275 59 2 20 chr12 46871091 46871531 -97410958 + L1PA7 LINE L1 5717 6149 -5 2363 63 0 48 chr12 46872659 46872974 -97409515 - AluY SINE Alu -11 300 1 381 283 80 27 chr12 46873547 46873722 -97408767 + MIR SINE MIR 3 185 -64 553 277 14 79 chr12 46873736 46873845 -97408644 - MIR SINE MIR -1 261 147 614 153 59 17 chr12 46873845 46873963 -97408526 - FLAM_C SINE Alu -10 123 1 553 277 14 79 chr12 46873963 46874131 -97408358 - MIR SINE MIR -115 147 2 858 313 107 42 chr12 46874307 46874895 -97407594 - L3 LINE CR1 -154 1423 798 252 292 106 80 chr12 46874886 46874999 -97407490 - L2 LINE L2 -16 3256 3141 * 326 284 92 35 chr12 46875143 46875284 -97407205 - L3 LINE CR1 -742 835 687 180 0 0 0 chr12 46875397 46875417 -97407072 + (A)n Simple_repeat Simple_repeat 1 20 0 1113 269 103 64 chr12 46876025 46876088 -97406401 + L1MEd LINE L1 319 378 -2112 270 0 0 0 chr12 46876088 46876118 -97406371 + (CA)n Simple_repeat Simple_repeat 2 31 0 243 0 0 0 chr12 46876117 46876144 -97406345 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 1113 269 103 64 chr12 46876118 46877194 -97405295 + L1MEd LINE L1 378 1558 -932 2146 73 42 0 chr12 46877194 46877361 -97405128 - AluY SINE Alu -11 300 115 464 0 0 18 chr12 46877361 46877418 -97405071 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 2146 73 42 0 chr12 46877418 46877538 -97404951 - AluY SINE Alu -196 115 1 1113 269 103 64 chr12 46877538 46877562 -97404927 + L1MEd LINE L1 1558 1580 -910 234 119 24 0 chr12 46877983 46878025 -97404464 + L1MC/D LINE L1 5844 5886 -1922 27 92 0 0 chr12 46878079 46878155 -97404334 + AT_rich Low_complexity Low_complexity 1 76 0 26 0 0 0 chr12 46878270 46878296 -97404193 + AT_rich Low_complexity Low_complexity 1 26 0 23 68 0 0 chr12 46878598 46878642 -97403847 + AT_rich Low_complexity Low_complexity 1 44 0 669 329 46 29 chr12 46878924 46879164 -97403325 - MIR SINE MIR -12 250 7 286 213 25 16 chr12 46881402 46881524 -97400965 + GA-rich Low_complexity Low_complexity 3 125 0 240 319 138 25 chr12 46881524 46881684 -97400805 + MIR3 SINE MIR 15 192 -16 331 361 57 0 chr12 46881757 46881879 -97400610 - L2 LINE L2 0 3272 3144 330 358 101 14 chr12 46881877 46882095 -97400394 - L2 LINE L2 -434 2880 2644 * 277 315 33 22 chr12 46882571 46882663 -97399826 - MIR SINE MIR -145 117 25 186 310 0 17 chr12 46883149 46883207 -97399282 - MER5A DNA MER1_type -84 105 49 * 197 250 0 118 chr12 46883177 46883253 -97399236 + MER5A DNA MER1_type 123 189 0 27 49 0 0 chr12 46883822 46883863 -97398626 + AT_rich Low_complexity Low_complexity 1 41 0 958 196 133 0 chr12 46886039 46886125 -97396364 - MER44D DNA MER2_type -1884 603 530 264 59 0 0 chr12 46886125 46886159 -97396330 + (TA)n Simple_repeat Simple_repeat 2 35 0 958 196 133 0 chr12 46886159 46886297 -97396192 - MER44D DNA MER2_type -1957 530 294 195 69 0 0 chr12 46886344 46886373 -97396116 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 575 175 10 0 chr12 46886382 46886479 -97396010 - AluJ/FLAM SINE Alu -212 100 3 1805 196 3 3 chr12 46886481 46886792 -97395697 - MER44D DNA MER2_type -394 311 1 192 40 0 0 chr12 46887473 46887498 -97394991 + (A)n Simple_repeat Simple_repeat 1 25 0 211 381 102 19 chr12 46887561 46888039 -97394450 - L2 LINE L2 -2256 1058 541 391 303 19 39 chr12 46888875 46889030 -97393459 - MIR SINE MIR -63 199 48 232 279 51 89 chr12 46890266 46890424 -97392065 + L2 LINE L2 2924 3075 -197 500 288 198 5 chr12 46892592 46892804 -97389685 - MIR SINE MIR 0 262 10 200 61 61 0 chr12 46894303 46894336 -97388153 + CT-rich Low_complexity Low_complexity 1 35 0 2764 13 0 16 chr12 46894638 46894952 -97387537 + AluYa5 SINE Alu 1 309 -2 682 291 10 34 chr12 46896029 46896235 -97386254 - MIR SINE MIR -1 261 61 396 158 0 0 chr12 46896825 46896901 -97385588 + GA-rich Low_complexity Low_complexity 2 77 0 207 180 20 60 chr12 46896933 46896983 -97385506 - MIR SINE MIR -18 244 197 214 337 47 0 chr12 46897225 46897311 -97385178 - L2 LINE L2 -832 2482 2393 207 300 14 29 chr12 46897542 46897612 -97384877 + L2 LINE L2 3245 3313 0 320 309 57 79 chr12 46897860 46898125 -97384364 + L2 LINE L2 2425 2683 -631 232 324 53 53 chr12 46898354 46898524 -97383965 + L2 LINE L2 2909 3078 -194 712 247 0 0 chr12 46898573 46898719 -97383770 + MIR SINE MIR 13 158 -104 526 237 101 0 chr12 46898725 46898864 -97383625 - MER46C DNA MER2_type -107 231 79 244 239 102 0 chr12 46899087 46899175 -97383314 + MIR SINE MIR 164 260 -2 276 260 0 14 chr12 46900429 46900513 -97381976 + (TATG)n Simple_repeat Simple_repeat 1 82 0 2354 72 3 0 chr12 46901075 46901381 -97381108 + L1PA7 LINE L1 5848 6154 0 420 71 0 0 chr12 46902211 46902267 -97380222 + (TA)n Simple_repeat Simple_repeat 2 57 0 618 277 245 33 chr12 46903369 46903863 -97378626 + L2 LINE L2 2660 3264 -49 301 271 28 56 chr12 46903949 46904056 -97378433 - MIR SINE MIR -75 133 30 24 0 0 0 chr12 46906526 46906550 -97375939 + AT_rich Low_complexity Low_complexity 1 24 0 524 281 86 36 chr12 46907428 46907649 -97374840 - MIR SINE MIR -13 249 18 309 303 138 50 chr12 46907899 46908117 -97374372 + L3 LINE CR1 1091 1327 -250 215 79 26 0 chr12 46908453 46908491 -97373998 + (TA)n Simple_repeat Simple_repeat 1 39 0 338 211 24 78 chr12 46908556 46908722 -97373767 + L1M4 LINE L1 2872 3028 -3118 1018 187 25 0 chr12 46908724 46908927 -97373562 + L1PA16 LINE L1 5950 6157 -9 2104 254 38 2 chr12 46908975 46909606 -97372883 + L1M4 LINE L1 3543 4196 -1950 413 367 28 11 chr12 46909653 46909830 -97372659 + MIR SINE MIR 63 242 -20 207 171 0 0 chr12 46910291 46910326 -97372163 + (CA)n Simple_repeat Simple_repeat 2 36 0 5130 70 1 5 chr12 46911404 46912078 -97370411 - L1PA7 LINE L1 0 6154 5483 942 68 0 0 chr12 46912082 46912200 -97370289 - L1PA7 LINE L1 -226 5928 5811 * 16013 83 17 0 chr12 46912190 46914544 -97367945 - L1PA7 LINE L1 -691 5481 3088 498 360 68 31 chr12 46914557 46914945 -97367544 - L2 LINE L2 -8 3264 2865 1283 179 73 0 chr12 46916092 46916394 -97366095 - MER33 DNA MER1_type 0 324 1 677 350 44 18 chr12 46916850 46917233 -97365256 + L2 LINE L2 2550 2942 -372 482 295 62 33 chr12 46917450 46917660 -97364829 - MIR SINE MIR -13 249 34 204 231 0 0 chr12 46918312 46918351 -97364138 + A-rich Low_complexity Low_complexity 2 40 0 206 319 15 108 chr12 46918832 46918923 -97363566 + MIR SINE MIR 20 83 -179 2078 137 3 3 chr12 46918923 46919230 -97363259 - AluSx SINE Alu -5 307 1 206 319 15 108 chr12 46919230 46919342 -97363147 + MIR SINE MIR 83 204 -58 1132 192 8 31 chr12 46919621 46919833 -97362656 + L1MB1 LINE L1 5913 6119 -49 2170 106 3 7 chr12 46919833 46920136 -97362353 + AluSx SINE Alu 1 302 -10 1132 192 8 31 chr12 46920136 46920183 -97362306 + L1MB1 LINE L1 6119 6166 -2 286 284 71 13 chr12 46920269 46920424 -97362065 + L1ME LINE L1 5503 5666 -455 546 57 0 0 chr12 46921816 46921886 -97360603 + (TA)n Simple_repeat Simple_repeat 1 70 0 342 368 144 21 chr12 46922220 46922805 -97359684 - L2 LINE L2 -236 3036 2381 318 337 71 12 chr12 46922886 46923055 -97359434 - MIR SINE MIR -17 245 67 221 326 137 0 chr12 46923257 46923352 -97359137 + L2 LINE L2 3133 3240 -32 715 272 41 10 chr12 46923382 46923577 -97358912 - MIR SINE MIR -32 230 30 1674 183 42 30 chr12 46923599 46923933 -97358556 - MER44D DNA MER2_type -1 608 1 605 269 29 17 chr12 46924092 46924267 -97358222 + MIR SINE MIR 64 240 -22 321 323 0 0 chr12 46924578 46924674 -97357815 + MIR SINE MIR 53 148 -114 198 0 0 0 chr12 46925946 46925968 -97356521 + (TA)n Simple_repeat Simple_repeat 2 23 0 2283 79 41 0 chr12 46925968 46926136 -97356353 - AluSx SINE Alu -9 303 117 387 0 0 0 chr12 46926136 46926179 -97356310 + (TG)n Simple_repeat Simple_repeat 2 44 0 2283 79 41 0 chr12 46926179 46926301 -97356188 - AluSx SINE Alu -195 117 1 282 116 0 0 chr12 46926428 46926471 -97356018 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 191 256 85 49 chr12 46927007 46927089 -97355400 - MIR SINE MIR -111 151 67 1929 142 17 7 chr12 46927534 46927829 -97354660 - AluSx SINE Alu -14 298 1 1312 219 16 60 chr12 46927833 46927984 -97354505 + MLT1A2 LTR MaLR 24 180 -194 300 27 0 0 chr12 46927984 46928021 -97354468 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 1312 219 16 60 chr12 46928021 46928179 -97354310 + MLT1A2 LTR MaLR 180 317 -57 1660 135 135 23 chr12 46928179 46928482 -97354007 + MER1B DNA MER1_type 1 337 0 1312 219 16 60 chr12 46928482 46928536 -97353953 + MLT1A2 LTR MaLR 317 372 -2 2054 188 82 17 chr12 46929912 46930386 -97352103 - MLT1D LTR MaLR 0 505 1 649 280 46 23 chr12 46930395 46930613 -97351876 - MIR SINE MIR 0 262 40 649 248 0 20 chr12 46931649 46931802 -97350687 + MLT1E LTR MaLR 1 150 -443 21 0 0 0 chr12 46934229 46934250 -97348239 + AT_rich Low_complexity Low_complexity 1 21 0 5813 49 3 0 chr12 46934718 46935432 -97347057 - L1PA7 LINE L1 -2 6152 5437 8053 82 10 9 chr12 46935432 46935886 -97346603 + L1P LINE L1 4242 4694 -1452 1921 87 0 4 chr12 46935886 46936139 -97346350 + AluY SINE Alu 58 309 -2 8053 82 10 9 chr12 46936139 46936844 -97345645 + L1P LINE L1 4694 5402 -744 333 138 12 100 chr12 46937492 46937572 -97344917 - MER20 DNA MER1_type 0 219 147 607 243 21 14 chr12 46937693 46937837 -97344652 - MER20 DNA MER1_type -73 146 2 2449 213 84 26 chr12 46938073 46938767 -97343722 + MER50 LTR ERV1 1 734 0 277 235 42 12 chr12 46939042 46939209 -97343280 + CT-rich Low_complexity Low_complexity 1 172 0 510 345 31 16 chr12 46939613 46939804 -97342685 + MIR3 SINE MIR 4 197 -11 279 0 0 0 chr12 46942064 46942095 -97340394 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 215 304 25 13 chr12 46943871 46943950 -97338539 - MIR3 SINE MIR -18 190 111 192 291 93 101 chr12 46944026 46944273 -97338216 + L2 LINE L2 2809 3053 -219 25 0 0 0 chr12 46944345 46944370 -97338119 + AT_rich Low_complexity Low_complexity 1 25 0 261 209 0 45 chr12 46944594 46944655 -97337834 - MER58A DNA MER1_type 0 224 167 392 271 0 74 chr12 46944655 46944777 -97337712 - MER58A DNA MER1_type 0 113 1 10248 227 41 40 chr12 46944817 46949064 -97333425 + L1M2 LINE L1 2 4255 -2593 2023 139 12 38 chr12 46949421 46949766 -97332723 + MER1B DNA MER1_type 1 336 -1 188 268 126 63 chr12 46950656 46950783 -97331706 + L3 LINE CR1 1286 1420 -157 245 245 0 98 chr12 46951062 46951164 -97331325 - MER103 DNA DNA -2 164 73 259 343 0 0 chr12 46951185 46951255 -97331234 - L2 LINE L2 0 3313 3244 190 231 21 66 chr12 46952070 46952226 -97330263 + L2 LINE L2 3119 3309 -4 364 230 58 0 chr12 46952808 46952895 -97329594 - MIR3 SINE MIR -8 200 109 272 384 79 0 chr12 46952881 46953045 -97329444 - L2 LINE L2 -452 2862 2686 * 22 0 0 0 chr12 46953551 46953573 -97328916 + AT_rich Low_complexity Low_complexity 1 22 0 380 385 94 50 chr12 46954085 46954469 -97328020 - L2 LINE L2 -16 3256 2856 801 319 136 26 chr12 46954760 46955458 -97327031 - L2 LINE L2 -564 2750 1976 676 268 114 5 chr12 46955715 46955935 -97326554 + LTR67 LTR ERVL 314 557 0 791 355 102 14 chr12 46955935 46956664 -97325825 - L2 LINE L2 -1280 2034 1242 30 59 0 0 chr12 46957296 46957347 -97325142 + AT_rich Low_complexity Low_complexity 1 51 0 35 0 0 0 chr12 46958268 46958303 -97324186 + AT_rich Low_complexity Low_complexity 1 35 0 227 54 27 0 chr12 46958618 46958655 -97323834 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 7637 27 0 0 chr12 46958656 46959573 -97322916 - L1PA3 LINE L1 -5 6150 5234 2373 82 3 16 chr12 46959577 46959883 -97322606 - AluY SINE Alu -9 302 1 182 194 0 0 chr12 46961637 46961673 -97320816 + L2 LINE L2 2217 2252 -1062 289 344 26 53 chr12 46961839 46962028 -97320461 + MIR SINE MIR 18 201 -61 2072 117 17 3 chr12 46962537 46962837 -97319652 + AluSx SINE Alu 1 304 -8 838 289 77 16 chr12 46964242 46964553 -97317936 - L2 LINE L2 -1955 1359 1030 41890 40 25 1 chr12 46964763 46970504 -97311985 - L1PA3 LINE L1 -275 5880 1 22 0 0 0 chr12 46970948 46970970 -97311519 + AT_rich Low_complexity Low_complexity 1 22 0 443 299 86 20 chr12 46971493 46971690 -97310799 - MIR SINE MIR -2 260 51 1313 140 4 48 chr12 46972740 46972969 -97309520 + MER20 DNA MER1_type 1 219 0 424 305 110 6 chr12 46973121 46973285 -97309204 - MER5A DNA MER1_type -1 188 8 516 245 170 14 chr12 46973444 46973591 -97308898 - MER5A DNA MER1_type -9 180 11 462 259 22 30 chr12 46973734 46973869 -97308620 + L2 LINE L2 3180 3313 0 14124 146 29 4 chr12 46974173 46976532 -97305957 + Tigger1 DNA MER2_type 1 2418 0 2193 185 88 29 chr12 46977131 46977580 -97304909 + MLT2B1 LTR ERVL 1 483 -37 405 39 0 0 chr12 46977580 46977631 -97304858 + (CA)n Simple_repeat Simple_repeat 2 52 0 2193 185 88 29 chr12 46977631 46977672 -97304817 + MLT2B1 LTR ERVL 483 520 0 615 200 12 18 chr12 46978103 46978273 -97304216 + GA-rich Low_complexity Low_complexity 3 171 0 258 26 0 0 chr12 46978351 46978389 -97304100 + AluY SINE Alu 264 301 -1 831 200 7 0 chr12 46978497 46978647 -97303842 + AluJo SINE Alu 3 153 -159 1176 154 0 81 chr12 46978844 46979078 -97303411 + AluJb SINE Alu 83 297 -15 3404 153 15 21 chr12 46980052 46980661 -97301828 - MER6A DNA MER2_type 0 605 1 2254 161 14 77 chr12 46980872 46981369 -97301120 - MLT1C LTR MaLR 0 467 2 1019 333 180 26 chr12 46982395 46983766 -97298723 + L2 LINE L2 1705 3272 0 642 316 127 41 chr12 46984436 46985285 -97297204 + L2 LINE L2 2395 3313 0 201 340 56 28 chr12 46986885 46987029 -97295460 - L3b LINE CR1 -187 1396 1249 2135 117 10 0 chr12 46987618 46987916 -97294573 + AluSq SINE Alu 1 301 -12 414 286 53 41 chr12 46989362 46989533 -97292956 + MIR SINE MIR 34 206 -56 305 265 124 32 chr12 46990272 46990457 -97292032 + MLT1K LTR MaLR 374 575 -13 378 308 51 0 chr12 46991613 46991730 -97290759 + MER5B DNA MER1_type 1 123 -55 1010 227 92 59 chr12 46992032 46992511 -97289978 + MLT1H1 LTR MaLR 9 548 -7 655 216 142 25 chr12 46992513 46992675 -97289814 + MER5A DNA MER1_type 9 189 0 362 351 33 33 chr12 46993250 46993401 -97289088 - L2 LINE L2 -18 3254 3104 475 335 141 24 chr12 46993401 46993649 -97288840 - L3 LINE CR1 -8 1569 1293 351 0 0 0 chr12 46994342 46994381 -97288108 + (CA)n Simple_repeat Simple_repeat 2 40 0 312 83 0 0 chr12 46994381 46994429 -97288060 + (GA)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr12 46995914 46995942 -97286547 + AT_rich Low_complexity Low_complexity 1 28 0 601 259 6 11 chr12 46996688 46996862 -97285627 + MER69A DNA AcHobo 3 175 -2 785 181 0 0 chr12 46997131 46997264 -97285225 - FLAM_C SINE Alu 0 133 1 24 0 0 0 chr12 46997376 46997400 -97285089 + AT_rich Low_complexity Low_complexity 1 24 0 352 352 106 0 chr12 46998494 46998636 -97283853 - L2 LINE L2 0 3272 3116 789 316 71 27 chr12 46998730 46999097 -97283392 - LTR33 LTR ERVL -95 426 44 250 319 55 0 chr12 47000028 47000119 -97282370 + MER91C DNA MER1_type 37 132 -8 21 36 0 0 chr12 47000244 47000272 -97282217 + AT_rich Low_complexity Low_complexity 1 28 0 1726 157 36 0 chr12 47003345 47003625 -97278864 - AluJb SINE Alu -18 294 5 205 333 56 65 chr12 47003644 47003752 -97278737 - L2 LINE L2 -57 3215 3109 447 269 96 54 chr12 47004010 47004070 -97278419 + MER5B DNA MER1_type 4 60 -118 2383 64 0 10 chr12 47004070 47004367 -97278122 + AluY SINE Alu 1 294 -17 447 269 96 54 chr12 47004367 47004473 -97278016 + MER5B DNA MER1_type 60 177 -1 3655 172 5 3 chr12 47004930 47005569 -97276920 + L1PA16 LINE L1 5518 6157 -9 4844 161 6 20 chr12 47005573 47006523 -97275966 + L1PA14 LINE L1 4295 5231 -915 4772 91 9 1 chr12 47006523 47007172 -97275317 + L1PA14 LINE L1 5478 6152 -9 22 0 0 0 chr12 47007279 47007301 -97275188 + AT_rich Low_complexity Low_complexity 1 22 0 442 293 179 0 chr12 47008150 47008290 -97274199 - MER5A DNA MER1_type -16 173 9 518 274 51 34 chr12 47008306 47008481 -97274008 + MER5B DNA MER1_type 1 178 0 212 219 0 27 chr12 47008674 47008747 -97273742 + GA-rich Low_complexity Low_complexity 2 72 0 2618 256 50 45 chr12 47009250 47010858 -97271631 + L1MB1 LINE L1 842 2599 -3964 237 162 0 0 chr12 47010907 47010944 -97271545 - Alu SINE Alu -264 37 1 1282 128 36 9 chr12 47010944 47011163 -97271326 - AluSg/x SINE Alu -1 311 87 11401 208 35 11 chr12 47011168 47014893 -97267596 + L1MB1 LINE L1 2584 6404 0 305 129 0 16 chr12 47014893 47014955 -97267534 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 1175 277 116 19 chr12 47014988 47015617 -97266872 - L1MDa LINE L1 -3315 3225 2536 233 311 76 23 chr12 47016004 47016175 -97266314 - L1MDa LINE L1 -873 2028 1819 30 59 0 0 chr12 47016907 47016958 -97265531 + AT_rich Low_complexity Low_complexity 1 51 0 2546 42 3 0 chr12 47017165 47017472 -97265017 - AluY SINE Alu -3 308 1 25 99 0 0 chr12 47017859 47017940 -97264549 + AT_rich Low_complexity Low_complexity 1 81 0 34 55 0 0 chr12 47018038 47018093 -97264396 + AT_rich Low_complexity Low_complexity 1 55 0 27 103 0 0 chr12 47018191 47018288 -97264201 + AT_rich Low_complexity Low_complexity 1 97 0 195 301 110 96 chr12 47019203 47019422 -97263067 + L2 LINE L2 3032 3253 -19 3299 131 37 35 chr12 47019438 47020062 -97262427 + L1MA9 LINE L1 5615 6239 -73 21 0 0 0 chr12 47020062 47020083 -97262406 + AT_rich Low_complexity Low_complexity 1 21 0 1107 224 36 63 chr12 47020593 47020772 -97261717 + MER58B DNA MER1_type 1 168 -2252 1947 148 3 0 chr12 47020772 47021077 -97261412 + AluSx SINE Alu 1 306 -6 1107 224 36 63 chr12 47021077 47021232 -97261257 + MER58B DNA MER1_type 168 326 -15 506 266 8 0 chr12 47021268 47021392 -97261097 + MLT1L LTR MaLR 152 276 -339 302 277 18 27 chr12 47021580 47021692 -97260797 + MLT1L LTR MaLR 505 615 0 271 216 0 0 chr12 47022113 47022164 -97260325 - MIR SINE MIR -1 261 211 1295 160 4 44 chr12 47022168 47022418 -97260071 + Tigger2a DNA MER2_type 1 240 -194 43887 37 3 1 chr12 47022481 47028641 -97253848 + L1PA4 LINE L1 1 6170 0 869 224 22 0 chr12 47028641 47028820 -97253669 + Tigger2a DNA MER2_type 262 444 0 1588 106 18 0 chr12 47034154 47034380 -97248109 + MER30 DNA MER1_type 1 230 0 245 304 49 29 chr12 47034725 47034827 -97247662 - MIR SINE MIR -126 136 33 676 256 192 40 chr12 47035239 47035693 -97246796 + L2 LINE L2 2794 3313 0 294 221 37 147 chr12 47035929 47036065 -97246424 + MIR SINE MIR 142 262 0 1909 336 117 48 chr12 47037303 47039835 -97242654 + L2 LINE L2 181 2887 -427 292 292 62 18 chr12 47039887 47040000 -97242489 + L1ME LINE L1 5482 5599 -522 215 114 23 0 chr12 47040345 47040389 -97242100 + (CA)n Simple_repeat Simple_repeat 2 46 0 291 319 66 11 chr12 47040885 47040976 -97241513 - L2 LINE L2 -16 3297 3202 396 260 153 27 chr12 47041189 47041339 -97241150 + MLT1L LTR MaLR 379 547 -2 209 351 117 50 chr12 47041351 47041873 -97240616 + L2 LINE L2 299 855 -2459 26 64 0 0 chr12 47041897 47041944 -97240545 + AT_rich Low_complexity Low_complexity 1 47 0 425 294 79 56 chr12 47042067 47042407 -97240082 + L1MC4a LINE L1 4644 4991 -1155 21 0 0 0 chr12 47042415 47042436 -97240053 + AT_rich Low_complexity Low_complexity 1 21 0 2105 94 3 36 chr12 47042647 47042977 -97239512 + AluSp SINE Alu 1 313 0 3409 147 29 27 chr12 47042978 47043605 -97238884 + L1PB4 LINE L1 5526 6153 -3 1131 260 44 29 chr12 47043681 47044066 -97238423 + L2 LINE L2 2234 2624 -690 198 365 40 8 chr12 47044232 47044358 -97238131 + L2 LINE L2 2930 3059 -213 216 0 0 0 chr12 47045053 47045077 -97237412 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 315 280 30 10 chr12 47046202 47046302 -97236187 + MIR SINE MIR 43 144 -118 494 281 157 0 chr12 47046497 47046650 -97235839 + MER5A DNA MER1_type 13 189 0 23 33 0 0 chr12 47047298 47047328 -97235161 + AT_rich Low_complexity Low_complexity 1 30 0 1484 144 148 0 chr12 47047410 47047673 -97234816 + AluSx SINE Alu 1 302 0 23 33 0 0 chr12 47048574 47048604 -97233885 + AT_rich Low_complexity Low_complexity 1 30 0 508 269 130 50 chr12 47049003 47049326 -97233163 + L1MC4a LINE L1 5552 5814 -307 21 36 0 0 chr12 47049881 47049909 -97232580 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 47050870 47050891 -97231598 + AT_rich Low_complexity Low_complexity 1 21 0 1217 220 32 125 chr12 47050898 47051489 -97231000 + L1ME3A LINE L1 5371 5906 -264 202 276 58 23 chr12 47051606 47051693 -97230796 + MIR SINE MIR 74 163 -99 876 212 16 11 chr12 47051843 47052027 -97230462 - MIR SINE MIR -41 221 37 186 103 0 0 chr12 47053839 47053868 -97228621 + (CA)n Simple_repeat Simple_repeat 2 30 0 2337 70 0 3 chr12 47054762 47055062 -97227427 + AluY SINE Alu 1 299 -12 243 218 0 0 chr12 47056957 47057012 -97225477 + (CACG)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr12 47058497 47058520 -97223969 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr12 47059845 47059874 -97222615 + AT_rich Low_complexity Low_complexity 1 29 0 378 323 61 0 chr12 47060159 47060258 -97222231 + MER91C DNA MER1_type 1 105 -35 280 319 33 0 chr12 47060416 47060507 -97221982 + MIR SINE MIR 59 152 -110 263 311 22 11 chr12 47060802 47060892 -97221597 + MIR3 SINE MIR 107 197 -11 8486 232 61 34 chr12 47061823 47066197 -97216292 + L1ME4a LINE L1 18 4658 -1887 12517 93 9 1 chr12 47066197 47068790 -97213699 + L1PA8 LINE L1 3565 6168 -4 8486 232 61 34 chr12 47068790 47069864 -97212625 + L1ME4a LINE L1 4658 5701 -844 12498 161 126 8 chr12 47069884 47072629 -97209860 + L1PBa LINE L1 6 3074 -3788 258 32 0 0 chr12 47072764 47072795 -97209694 + (TA)n Simple_repeat Simple_repeat 2 32 0 241 49 0 0 chr12 47072796 47072837 -97209652 - LTR66 LTR ERVL -172 438 398 219 69 0 0 chr12 47072837 47072866 -97209623 + (CA)n Simple_repeat Simple_repeat 2 30 0 297 0 0 0 chr12 47072882 47072915 -97209574 + (TA)n Simple_repeat Simple_repeat 2 34 0 1858 121 0 0 chr12 47072915 47073188 -97209301 + L1PB1 LINE L1 5782 6054 -97 1969 274 120 52 chr12 47073194 47074159 -97208330 - L2 LINE L2 -690 2624 1594 699 298 119 24 chr12 47074389 47074852 -97207637 + L1ME4a LINE L1 5852 6358 -157 193 297 142 26 chr12 47075320 47075475 -97207014 + MIR SINE MIR 90 262 0 506 292 128 22 chr12 47075785 47076011 -97206478 + MIR SINE MIR 2 251 -11 405 256 301 10 chr12 47077019 47077218 -97205271 + MIR SINE MIR 6 262 0 463 295 107 37 chr12 47077663 47077907 -97204582 + MIR SINE MIR 1 261 -1 297 294 151 8 chr12 47078045 47078171 -97204318 - L3 LINE CR1 -73 1504 1361 681 259 84 0 chr12 47079942 47080239 -97202250 + L1M4 LINE L1 4166 4487 -1659 619 282 115 34 chr12 47080246 47080629 -97201860 + L1M4 LINE L1 4542 4955 -1191 2269 103 0 6 chr12 47080645 47080956 -97201533 - AluSc SINE Alu 0 309 1 781 285 47 4 chr12 47083201 47083436 -97199053 + MIR SINE MIR 8 252 -10 331 283 57 0 chr12 47083534 47083640 -97198849 - L2 LINE L2 -2 3311 3200 1652 292 117 7 chr12 47084539 47085303 -97197186 + L1MC4 LINE L1 7187 8034 -8 22 0 0 0 chr12 47085590 47085612 -97196877 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 47086281 47086302 -97196187 + AT_rich Low_complexity Low_complexity 1 21 0 517 271 107 29 chr12 47086683 47087133 -97195356 + L1MC/D LINE L1 4350 4834 -1312 374 249 156 29 chr12 47087905 47088157 -97194332 + L1MC/D LINE L1 5316 5406 -758 227 125 167 0 chr12 47088505 47088553 -97193936 + L1 LINE L1 4774 4829 -1317 22 35 0 0 chr12 47088554 47088583 -97193906 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr12 47089030 47089059 -97193430 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 80 0 0 chr12 47090256 47090306 -97192183 + AT_rich Low_complexity Low_complexity 1 50 0 467 186 186 43 chr12 47092249 47092389 -97190100 + MER63A DNA MER1_type 51 210 0 2747 82 5 0 chr12 47092675 47093055 -97189434 + L1PA8 LINE L1 5791 6172 0 244 308 88 11 chr12 47093147 47093238 -97189251 - L2 LINE L2 -211 3061 2964 273 322 129 0 chr12 47094569 47094740 -97187749 + MIR SINE MIR 2 194 -68 498 304 7 7 chr12 47094774 47094912 -97187577 - MIR SINE MIR -123 139 2 362 203 13 13 chr12 47094912 47094989 -97187500 + MIR SINE MIR 180 256 -6 23 0 0 0 chr12 47095265 47095288 -97187201 + AT_rich Low_complexity Low_complexity 1 23 0 262 248 134 34 chr12 47095349 47095498 -97186991 + L1ME4a LINE L1 5956 6119 -2 540 338 113 33 chr12 47095509 47096083 -97186406 + L3 LINE CR1 804 1423 -154 700 167 65 0 chr12 47096635 47096773 -97185716 - MIR SINE MIR -50 212 66 1883 114 0 0 chr12 47097334 47097579 -97184910 - AluSg SINE Alu -28 282 38 578 282 6 44 chr12 47098786 47098967 -97183522 - MER20B DNA MER1_type -607 176 3 200 315 34 47 chr12 47099257 47099406 -97183083 - L2 LINE L2 -274 2998 2852 469 298 147 0 chr12 47099532 47099723 -97182766 + MLT1K LTR MaLR 84 302 -286 21 0 0 0 chr12 47100028 47100049 -97182440 + AT_rich Low_complexity Low_complexity 1 21 0 2909 9 0 0 chr12 47100425 47100741 -97181748 - AluYb8 SINE Alu -2 316 1 461 327 109 60 chr12 47101929 47102026 -97180463 - L2 LINE L2 -701 2613 2522 2552 56 0 3 chr12 47102026 47102332 -97180157 + AluY SINE Alu 1 305 -6 461 327 109 60 chr12 47102332 47102702 -97179787 - L2 LINE L2 -792 2522 2123 216 0 0 0 chr12 47102746 47102770 -97179719 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr12 47102823 47102847 -97179642 + AT_rich Low_complexity Low_complexity 1 24 0 1979 139 0 7 chr12 47103424 47103585 -97178904 - AluSx SINE Alu -19 293 133 423 0 0 0 chr12 47103585 47103632 -97178857 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1979 139 0 7 chr12 47103632 47103764 -97178725 - AluSx SINE Alu -179 133 2 274 305 12 12 chr12 47103835 47103917 -97178572 + MIR SINE MIR 3 84 -178 180 77 0 0 chr12 47104651 47104677 -97177812 + (GA)n Simple_repeat Simple_repeat 1 26 0 5955 138 26 20 chr12 47104811 47106032 -97176457 - L1MA9 LINE L1 -11 6301 5087 253 266 87 71 chr12 47106221 47106405 -97176084 - MIR SINE MIR -7 255 69 208 167 0 24 chr12 47106479 47106521 -97175968 - MIR SINE MIR -187 75 35 6640 98 17 29 chr12 47106871 47107967 -97174522 - L1MA3 LINE L1 -11 6294 5211 245 87 0 22 chr12 47108915 47108961 -97173528 + (ATG)n Simple_repeat Simple_repeat 1 45 0 753 255 145 57 chr12 47111194 47111664 -97170825 + MLT1J LTR MaLR 1 511 0 673 205 103 22 chr12 47111736 47111921 -97170568 - MER58C DNA MER1_type -15 200 1 209 328 54 73 chr12 47113105 47113309 -97169180 + L2 LINE L2 3068 3267 -5 203 263 0 13 chr12 47114046 47114122 -97168367 + (TA)n Simple_repeat Simple_repeat 1 75 0 396 336 17 8 chr12 47116698 47116817 -97165672 + L2 LINE L2 3151 3270 -2 * 574 237 224 32 chr12 47116815 47116942 -97165547 - MIR SINE MIR 0 262 161 836 191 98 25 chr12 47116942 47117146 -97165343 - MER20 DNA MER1_type 0 219 1 574 237 224 32 chr12 47117146 47117237 -97165252 - MIR SINE MIR -101 161 2 243 298 24 0 chr12 47117259 47117343 -97165146 - MIR SINE MIR -10 252 167 458 296 111 45 chr12 47118126 47118325 -97164164 + MIR SINE MIR 30 241 -21 198 296 0 0 chr12 47118291 47118335 -97164154 + L2 LINE L2 3253 3296 -17 * 302 416 15 5 chr12 47119678 47119875 -97162614 + L2 LINE L2 2825 3023 -249 1456 40 6 0 chr12 47120178 47120354 -97162135 + AluY SINE Alu 119 295 -16 21 0 0 0 chr12 47120752 47120773 -97161716 + AT_rich Low_complexity Low_complexity 1 21 0 1648 44 31 0 chr12 47121509 47121737 -97160752 + L1PA2 LINE L1 996 1230 -4916 21298 40 1 1 chr12 47121737 47125157 -97157332 + L1PA2 LINE L1 2736 6152 -3 278 179 0 0 chr12 47125167 47125227 -97157262 + L1 LINE L1 2745 2804 -3342 1099 201 52 117 chr12 47125230 47125603 -97156886 + MLT1A1 LTR MaLR 1 371 -3 3872 149 13 56 chr12 47125930 47126163 -97156326 - L1M1 LINE L1 -743 5403 5161 315 0 0 0 chr12 47126163 47126198 -97156291 + (TG)n Simple_repeat Simple_repeat 2 36 0 3872 149 13 56 chr12 47126198 47126927 -97155562 - L1M1 LINE L1 -985 5161 4600 714 194 33 0 chr12 47126931 47127111 -97155378 + L1 LINE L1 3205 3390 -2756 21 0 0 0 chr12 47128050 47128071 -97154418 + GC_rich Low_complexity Low_complexity 1 21 0 203 263 0 13 chr12 47128832 47128908 -97153581 + (TA)n Simple_repeat Simple_repeat 2 76 0 218 335 63 63 chr12 47129645 47129836 -97152653 - L2 LINE L2 -5 3267 3077 378 259 249 5 chr12 47131139 47131324 -97151165 - MIR SINE MIR 0 262 33 727 249 67 143 chr12 47131533 47132099 -97150390 + MLT1C-int LTR MaLR 742 1264 -107 2674 126 54 12 chr12 47132138 47132637 -97149852 - L1MA8 LINE L1 -4 6287 5768 378 188 31 52 chr12 47132644 47132740 -97149749 + L1MA8 LINE L1 5683 5776 -392 25 0 0 0 chr12 47132803 47132828 -97149661 + AT_rich Low_complexity Low_complexity 1 25 0 665 124 0 16 chr12 47133209 47133330 -97149159 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 1587 226 61 56 chr12 47133347 47133828 -97148661 + L1ME2 LINE L1 4693 5170 -994 1356 197 144 40 chr12 47133828 47134250 -97148239 + MLT1C LTR MaLR 1 466 -1 1587 226 61 56 chr12 47134250 47134755 -97147734 + L1ME2 LINE L1 5170 5685 -479 846 206 71 145 chr12 47134755 47134914 -97147575 - MLT1A2 LTR MaLR -10 364 195 1956 163 0 0 chr12 47134914 47135214 -97147275 + AluJb SINE Alu 1 300 -12 846 206 71 145 chr12 47135214 47135447 -97147042 - MLT1A2 LTR MaLR -179 195 1 885 263 52 40 chr12 47135447 47135869 -97146620 + L1ME2 LINE L1 5728 6154 -10 27 0 0 0 chr12 47136073 47136100 -97146389 + AT_rich Low_complexity Low_complexity 1 27 0 661 136 88 16 chr12 47136595 47136720 -97145769 - MER3 DNA MER1_type -21 188 55 23 0 0 0 chr12 47138634 47138657 -97143832 + AT_rich Low_complexity Low_complexity 1 23 0 1771 154 4 0 chr12 47138958 47139225 -97143264 + AluSx SINE Alu 33 300 -12 274 254 0 0 chr12 47140315 47140370 -97142119 + Charlie8 DNA MER1_type 2344 2398 -19 2808 225 71 20 chr12 47140498 47141504 -97140985 + L1ME2 LINE L1 5086 6153 -11 30 45 0 0 chr12 47141594 47141638 -97140851 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr12 47141797 47141818 -97140671 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr12 47141859 47141889 -97140600 + AT_rich Low_complexity Low_complexity 1 30 0 190 346 84 28 chr12 47145899 47146006 -97136483 - L3 LINE CR1 -24 1553 1441 351 0 0 0 chr12 47146013 47146052 -97136437 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 965 177 84 4 chr12 47146156 47146393 -97136096 - MER33 DNA MER1_type -68 256 1 468 250 65 8 chr12 47146400 47146524 -97135965 - MER5B DNA MER1_type 0 178 48 348 314 46 26 chr12 47146422 47146575 -97135914 + MER5A DNA MER1_type 34 189 0 * 746 286 15 5 chr12 47146575 47146774 -97135715 - L3 LINE CR1 -264 1313 1113 242 365 62 14 chr12 47147239 47147384 -97135105 - L2 LINE L2 -4 3268 3117 1706 258 25 44 chr12 47147446 47148190 -97134299 - L2 LINE L2 -49 3264 2543 182 347 37 63 chr12 47148200 47148390 -97134099 - L2 LINE L2 -145 3127 2943 474 264 226 5 chr12 47149248 47149456 -97133033 - MIR SINE MIR 0 262 9 27 0 0 0 chr12 47150023 47150050 -97132439 + AT_rich Low_complexity Low_complexity 1 27 0 2128 133 3 0 chr12 47150441 47150742 -97131747 + AluSx SINE Alu 1 302 -10 1843 198 65 46 chr12 47151527 47152023 -97130466 - MLT1D LTR MaLR 0 505 1 254 244 117 0 chr12 47152029 47152144 -97130345 - MLT1D-int LTR MaLR -5 1730 1243 2410 234 39 65 chr12 47152159 47152971 -97129518 + L1M3e LINE L1 461 1251 -6238 3363 230 39 72 chr12 47152971 47153347 -97129142 + L1M3e LINE L1 2008 2395 -5170 3519 108 10 0 chr12 47153347 47153856 -97128633 + MER75 DNA T2_type 1 514 0 3363 230 39 72 chr12 47153856 47154143 -97128346 + L1M3e LINE L1 2395 2690 -4875 2376 42 0 3 chr12 47154143 47154431 -97128058 - L1PA7 LINE L1 -15 6139 5853 3363 230 39 72 chr12 47154431 47156103 -97126386 + L1M3e LINE L1 2690 4175 -3390 * 3833 7 0 0 chr12 47156102 47156601 -97125888 - L1P1 LINE L1 -469 5686 5188 * 4290 16 0 0 chr12 47156599 47157088 -97125401 + L1HS LINE L1 5664 6152 -3 8657 163 22 39 chr12 47157105 47157167 -97125322 + L1M3e LINE L1 4165 4227 -3338 1280 186 73 102 chr12 47157167 47157539 -97124950 + MLT1A1 LTR MaLR 1 361 -4 8657 163 22 39 chr12 47157539 47159111 -97123378 + L1M3e LINE L1 4227 5764 -1801 2141 130 0 0 chr12 47159111 47159411 -97123078 + AluSx SINE Alu 6 305 -7 8657 163 22 39 chr12 47159411 47159683 -97122806 + L1M3e LINE L1 5764 6039 -1526 496 186 0 31 chr12 47159678 47159775 -97122714 - L1MA8 LINE L1 -515 5776 5683 * 2858 119 53 12 chr12 47159775 47160281 -97122208 + L1MA8 LINE L1 5756 6287 -4 1267 237 61 131 chr12 47160319 47160955 -97121534 - MLT1D-int LTR MaLR -107 1264 673 2483 223 17 17 chr12 47161092 47161685 -97120804 - MLT1D-int LTR MaLR -765 606 14 1977 236 32 12 chr12 47161698 47162193 -97120296 - MLT1D LTR MaLR 0 505 1 263 352 86 13 chr12 47162246 47162479 -97120010 + L2 LINE L2 2804 3053 -219 372 301 114 0 chr12 47162731 47162854 -97119635 - MIR SINE MIR -120 142 6 212 128 43 0 chr12 47164982 47165029 -97117460 + A-rich Low_complexity Low_complexity 2 50 0 25 83 0 0 chr12 47165182 47165242 -97117247 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr12 47167168 47167189 -97115300 + AT_rich Low_complexity Low_complexity 1 21 0 204 265 0 0 chr12 47167622 47167671 -97114818 + G-rich Low_complexity Low_complexity 128 176 0 189 0 0 0 chr12 47168413 47168434 -97114055 + (GA)n Simple_repeat Simple_repeat 2 22 0 609 183 42 8 chr12 47169708 47169828 -97112661 - MER20 DNA MER1_type 0 219 96 569 251 59 26 chr12 47169828 47170099 -97112390 - L1MDa LINE L1 -4119 2421 2142 1802 198 29 63 chr12 47170151 47170640 -97111849 + MLT1D LTR MaLR 34 505 0 705 296 79 95 chr12 47170670 47171377 -97111112 + L1MEd LINE L1 19 737 -5486 258 32 0 0 chr12 47171377 47171408 -97111081 + (CA)n Simple_repeat Simple_repeat 2 32 0 705 296 79 95 chr12 47171408 47171918 -97110571 + L1MEd LINE L1 737 1254 -4969 301 377 51 23 chr12 47171916 47172091 -97110398 + L1MDa LINE L1 16 195 -6345 * 317 43 21 0 chr12 47172092 47172139 -97110350 + (TTG)n Simple_repeat Simple_repeat 1 48 0 723 93 0 0 chr12 47172139 47172236 -97110253 - HY3 scRNA scRNA -4 97 1 2765 230 84 41 chr12 47172436 47173524 -97108965 + L1MDa LINE L1 1013 2146 -4394 420 157 0 0 chr12 47173524 47173594 -97108895 - MLT1D LTR MaLR 0 626 557 459 238 12 6 chr12 47173594 47173762 -97108727 + (TA)n Simple_repeat Simple_repeat 2 170 0 236 167 0 0 chr12 47173762 47173798 -97108691 + (CA)n Simple_repeat Simple_repeat 1 36 0 2192 111 0 0 chr12 47173804 47174093 -97108396 - AluSx SINE Alu -23 289 1 1659 187 9 38 chr12 47174100 47174415 -97108074 - AluSx SINE Alu -6 306 1 1518 237 34 36 chr12 47174415 47174862 -97107627 - MLT1D LTR MaLR -59 446 1 1163 269 35 43 chr12 47174862 47175694 -97106795 + L1MDa LINE L1 2142 2969 -3571 3811 250 67 22 chr12 47175709 47176263 -97106226 + L1M4 LINE L1 3531 4059 -2087 2019 145 0 19 chr12 47176263 47176580 -97105909 + AluSx SINE Alu 1 311 -1 3811 250 67 22 chr12 47176580 47177351 -97105138 + L1M4 LINE L1 4059 5000 -1146 597 28 0 0 chr12 47177351 47177422 -97105067 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 3811 250 67 22 chr12 47177422 47177775 -97104714 + L1M4 LINE L1 5000 5336 -810 4566 155 39 53 chr12 47177786 47178442 -97104047 - L1MA4 LINE L1 -5 6295 5631 186 43 0 0 chr12 47178442 47178465 -97104024 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 730 186 0 0 chr12 47178465 47178583 -97103906 - FLAM_C SINE Alu -15 118 1 4566 155 39 53 chr12 47178583 47178923 -97103566 - L1MA4 LINE L1 -668 5632 5289 273 29 0 0 chr12 47178923 47178957 -97103532 + (TTG)n Simple_repeat Simple_repeat 2 35 0 4566 155 39 53 chr12 47178957 47179654 -97102835 - L1MA4 LINE L1 -1011 5289 4600 714 194 33 0 chr12 47179658 47179838 -97102651 + L1MDa LINE L1 3599 3784 -2756 188 35 35 0 chr12 47180103 47180132 -97102357 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 265 305 105 0 chr12 47181645 47181741 -97100748 - MIR SINE MIR -63 145 43 2082 142 3 0 chr12 47181985 47182295 -97100194 - AluSx SINE Alu 0 312 2 183 333 227 0 chr12 47182489 47182564 -97099925 - L2 LINE L2 -973 2341 2250 226 310 42 70 chr12 47182932 47183074 -97099415 + L2 LINE L2 3175 3312 -1 337 319 28 52 chr12 47183634 47183782 -97098707 - MIR SINE MIR 0 262 121 2554 58 0 3 chr12 47183782 47184090 -97098399 + AluY SINE Alu 1 307 -4 337 319 28 52 chr12 47184090 47184192 -97098297 - MIR SINE MIR -141 121 18 828 252 68 9 chr12 47184292 47184514 -97097975 - MLT1C LTR MaLR -8 459 225 334 177 85 146 chr12 47185104 47185268 -97097221 - MER5C DNA MER1_type -1 323 170 21 36 0 0 chr12 47187691 47187719 -97094770 + AT_rich Low_complexity Low_complexity 1 28 0 297 338 101 0 chr12 47188106 47188245 -97094244 - L2 LINE L2 -447 2867 2715 30364 108 10 21 chr12 47188592 47192007 -97090482 + L1PA7 LINE L1 9 3460 -3009 1719 134 0 0 chr12 47192007 47192245 -97090244 + AluSc SINE Alu 33 270 -39 324 0 0 0 chr12 47192251 47192287 -97090202 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 30364 108 10 21 chr12 47192287 47195311 -97087178 + L1PA7 LINE L1 3465 6465 -4 25 0 0 0 chr12 47195311 47195336 -97087153 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr12 47195439 47195464 -97087025 + AT_rich Low_complexity Low_complexity 1 25 0 840 283 115 56 chr12 47195550 47195960 -97086529 + MLT1J2 LTR MaLR 15 448 -2 639 147 46 0 chr12 47196373 47196482 -97086007 - MER46A DNA MER2_type -122 114 1 26 0 0 0 chr12 47196582 47196608 -97085881 + AT_rich Low_complexity Low_complexity 1 26 0 5517 291 100 29 chr12 47197088 47198159 -97084330 - L2 LINE L2 -4 3309 2316 2264 111 45 3 chr12 47198159 47198518 -97083971 + THE1C LTR MaLR 1 374 -1 5517 291 100 29 chr12 47198518 47199951 -97082538 - L2 LINE L2 -997 2316 610 22 70 0 0 chr12 47200076 47200119 -97082370 + AT_rich Low_complexity Low_complexity 1 43 0 5206 168 35 29 chr12 47200316 47200991 -97081498 + L1PA16 LINE L1 4114 4784 -1382 381 102 0 0 chr12 47200991 47201050 -97081439 + (CA)n Simple_repeat Simple_repeat 2 60 0 5206 168 35 29 chr12 47201050 47202415 -97080074 + L1PA16 LINE L1 4784 6157 -9 197 322 86 118 chr12 47202924 47203138 -97079351 - L2 LINE L2 -48 3224 3015 886 19 0 0 chr12 47203138 47203280 -97079209 + L1PA4 LINE L1 6049 6190 0 197 322 86 118 chr12 47203280 47203317 -97079172 - L2 LINE L2 -257 3015 2978 407 248 31 8 chr12 47203639 47203768 -97078721 + MER103 DNA DNA 33 164 -2 1016 171 79 35 chr12 47204085 47204313 -97078176 + MIR SINE MIR 1 238 -24 186 355 0 0 chr12 47204280 47204342 -97078147 + L2 LINE L2 3210 3271 -1 * 1750 227 147 17 chr12 47205154 47205972 -97076517 + L2 LINE L2 2395 3306 -7 416 264 25 0 chr12 47205980 47206101 -97076388 - L2 LINE L2 -1001 2313 2190 2429 61 0 7 chr12 47206116 47206413 -97076076 - AluY SINE Alu -16 295 1 376 379 46 11 chr12 47208030 47208204 -97074285 - L3 LINE CR1 -1 1576 1397 409 200 36 55 chr12 47208304 47208414 -97074075 - MER5B DNA MER1_type -66 112 5 335 312 180 5 chr12 47208546 47208735 -97073754 + MIR SINE MIR 1 222 -40 1162 201 136 60 chr12 47208767 47209209 -97073280 + MLT1E1 LTR MaLR 1 414 -210 456 19 0 0 chr12 47209776 47209829 -97072660 + (TG)n Simple_repeat Simple_repeat 2 54 0 620 299 48 0 chr12 47210220 47210427 -97072062 + MLT1L LTR MaLR 399 615 0 266 300 108 17 chr12 47210451 47210571 -97071918 + MIR SINE MIR 106 236 -26 40 0 0 0 chr12 47210576 47210616 -97071873 + AT_rich Low_complexity Low_complexity 1 40 0 2328 180 42 15 chr12 47210667 47211122 -97071367 + MLT1C LTR MaLR 1 467 0 364 298 48 40 chr12 47212530 47212654 -97069835 - L2 LINE L2 -4 3268 3144 453 273 256 0 chr12 47212689 47212865 -97069624 + MIR SINE MIR 2 222 -40 1958 164 40 68 chr12 47213615 47214086 -97068403 + MLT1C LTR MaLR 10 467 0 395 340 41 14 chr12 47214094 47214241 -97068248 - L2 LINE L2 0 3272 3122 223 303 30 0 chr12 47214406 47214472 -97068017 + L2 LINE L2 3245 3312 -1 1021 345 87 31 chr12 47214586 47215418 -97067071 - L2 LINE L2 -264 3008 2128 2028 133 0 16 chr12 47215815 47216123 -97066366 - AluSx SINE Alu -9 303 1 223 371 68 15 chr12 47216955 47217087 -97065402 - MIR3 SINE MIR -4 204 66 257 234 117 13 chr12 47218004 47218081 -97064408 - L1MD2 LINE L1 -42 6317 6233 451 313 111 17 chr12 47218572 47218892 -97063597 + L2 LINE L2 2913 3308 -5 372 300 17 17 chr12 47219024 47219144 -97063345 - MIR3 SINE MIR -6 202 83 2189 83 0 48 chr12 47219233 47219546 -97062943 + AluY SINE Alu 1 298 -13 570 318 108 5 chr12 47220882 47221096 -97061393 + MIR SINE MIR 12 247 -15 32617 40 1 2 chr12 47222968 47226957 -97055532 + L1P LINE L1 9 3991 -2155 1033 110 0 0 chr12 47227728 47227864 -97054625 + AluSq/x SINE Alu 1 136 -176 2396 81 0 7 chr12 47227864 47228174 -97054315 + AluSg SINE Alu 1 308 -2 3493 178 8 28 chr12 47228175 47229021 -97053468 + L1M2 LINE L1 4699 5524 -743 353 255 355 42 chr12 47230106 47230506 -97051983 + L3 LINE CR1 885 1409 -168 569 173 0 0 chr12 47230704 47230808 -97051681 - U13 snRNA snRNA 0 104 1 197 202 45 101 chr12 47231354 47231443 -97051046 + MIR3 SINE MIR 124 207 -1 262 365 19 0 chr12 47231471 47231575 -97050914 - L2 LINE L2 -1 3312 3207 248 141 254 28 chr12 47231607 47231678 -97050811 + MER5C DNA MER1_type 1 87 -237 1786 167 0 4 chr12 47231743 47232024 -97050465 - AluJb SINE Alu -26 286 7 1985 129 7 7 chr12 47232253 47232555 -97049934 - AluSg SINE Alu -8 302 1 305 314 149 0 chr12 47233496 47233617 -97048872 - L2 LINE L2 -15 3257 3119 2535 87 6 11 chr12 47233692 47234047 -97048442 + L1PA8 LINE L1 5807 6159 -13 1903 103 58 7 chr12 47234073 47234365 -97048124 - THE1B LTR MaLR -57 307 1 2050 169 93 2 chr12 47234365 47234774 -97047715 + L1MC1 LINE L1 5882 6327 -6 792 211 91 4 chr12 47235323 47235588 -97046901 - L1M4 LINE L1 -937 5209 4922 310 235 53 53 chr12 47235557 47235689 -97046800 - L1M4 LINE L1 -840 5306 5175 * 750 133 0 8 chr12 47235749 47235869 -97046620 + FLAM_C SINE Alu 21 139 -4 1890 124 3 11 chr12 47236311 47236594 -97045895 - AluSx SINE Alu -31 281 1 8548 122 34 15 chr12 47237268 47238307 -97044182 - THE1C-int LTR MaLR -263 1317 247 2277 111 17 8 chr12 47238307 47238659 -97043830 + THE1A LTR MaLR 1 355 0 8548 122 34 15 chr12 47238659 47238910 -97043579 - THE1C-int LTR MaLR -1333 247 2 2585 104 22 0 chr12 47238912 47239278 -97043211 - THE1C LTR MaLR -1 374 1 445 313 0 16 chr12 47239280 47239408 -97043081 + MLT1H LTR MaLR 227 352 -197 2136 125 3 3 chr12 47239454 47239766 -97042723 + AluJb SINE Alu 1 312 0 405 0 0 0 chr12 47239769 47239814 -97042675 + (TA)n Simple_repeat Simple_repeat 2 46 0 651 226 153 29 chr12 47239814 47240128 -97042361 + L1MC5 LINE L1 7311 7663 -298 726 171 0 0 chr12 47240143 47240260 -97042229 - FLAM_C SINE Alu -16 117 1 528 216 0 0 chr12 47240272 47240369 -97042120 + FAM SINE Alu 6 102 -83 367 213 107 33 chr12 47241769 47241919 -97040570 + L1MC5 LINE L1 7771 7931 -30 25925 40 2 0 chr12 47243127 47247132 -97035357 + L1PA3 LINE L1 2144 6152 -3 35 24 0 0 chr12 47247132 47247174 -97035315 + AT_rich Low_complexity Low_complexity 1 42 0 333 326 124 5 chr12 47247174 47247333 -97035156 - L2 LINE L2 -12 3260 3073 2246 164 59 2 chr12 47247333 47247742 -97034747 + MSTB1 LTR MaLR 1 432 0 333 326 124 5 chr12 47247742 47247775 -97034714 - L2 LINE L2 -199 3073 3045 3179 113 2 0 chr12 47247913 47248371 -97034118 - L1PA15 LINE L1 0 6165 5707 22 0 0 0 chr12 47248527 47248549 -97033940 + AT_rich Low_complexity Low_complexity 1 22 0 6864 33 2 0 chr12 47248585 47249408 -97033081 + L1PA4 LINE L1 5326 6150 -5 2104 122 0 0 chr12 47249957 47250268 -97032221 - AluSx SINE Alu 0 311 1 233 297 132 0 chr12 47251094 47251185 -97031304 + MIR SINE MIR 93 195 -67 222 319 0 0 chr12 47252120 47252167 -97030322 - L2 LINE L2 -1161 2153 2107 1033 304 162 21 chr12 47252200 47252812 -97029677 - L2 LINE L2 -1454 1860 1163 751 224 121 56 chr12 47252821 47253053 -97029436 - MIR SINE MIR -10 252 6 935 298 103 34 chr12 47253072 47253448 -97029041 - L2 LINE L2 -2180 1134 709 1985 132 10 3 chr12 47253448 47253758 -97028731 + AluSx SINE Alu 1 312 0 935 298 103 34 chr12 47253758 47253914 -97028575 - L2 LINE L2 -2605 709 565 334 238 0 0 chr12 47253949 47254012 -97028477 - MER81 DNA DNA -8 106 44 246 314 59 29 chr12 47254020 47254122 -97028367 - L2 LINE L2 -2783 531 427 224 373 155 27 chr12 47255611 47256274 -97026215 + L2 LINE L2 2059 2806 -508 22 0 0 0 chr12 47257089 47257111 -97025378 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 47257223 47257248 -97025241 + AT_rich Low_complexity Low_complexity 1 25 0 2213 118 0 6 chr12 47257278 47257591 -97024898 + AluSx SINE Alu 1 311 -1 2190 102 0 19 chr12 47258320 47258633 -97023856 + AluSc SINE Alu 1 307 -2 327 300 24 56 chr12 47258791 47258967 -97023522 + MIR SINE MIR 5 172 -36 43053 31 21 1 chr12 47260240 47266270 -97016219 + L1PA2 LINE L1 1 6155 0 240 238 252 9 chr12 47267429 47267639 -97014850 + L1ME4a LINE L1 5847 6107 -14 1151 267 74 47 chr12 47267688 47268451 -97014038 - L2 LINE L2 0 3313 2530 525 287 80 42 chr12 47269033 47269270 -97013219 + MIR SINE MIR 17 262 0 1490 317 57 39 chr12 47269498 47270551 -97011938 + L1PA15-16 LINE L1 40 1457 -5392 12207 197 58 36 chr12 47270562 47271733 -97010756 + L1MA1 LINE L1 1799 2943 -4061 2114 108 0 63 chr12 47271733 47272066 -97010423 + AluSx SINE Alu 1 312 0 12207 197 58 36 chr12 47272066 47272459 -97010030 + L1MA1 LINE L1 2943 3326 -3678 5694 117 21 5 chr12 47272459 47273527 -97008962 + L1PA15 LINE L1 5080 6162 -3 12207 197 58 36 chr12 47273527 47276643 -97005846 + L1MA1 LINE L1 3326 6836 -168 223 173 58 0 chr12 47276645 47276697 -97005792 + GA-rich Low_complexity Low_complexity 4 58 0 281 297 72 36 chr12 47277517 47277655 -97004834 + L2 LINE L2 3165 3307 -6 204 40 0 0 chr12 47277672 47277697 -97004792 + (A)n Simple_repeat Simple_repeat 1 25 0 275 189 128 40 chr12 47278060 47278208 -97004281 + L1ME4a LINE L1 5961 6121 0 264 238 13 60 chr12 47279110 47279154 -97003335 + (TA)n Simple_repeat Simple_repeat 1 45 -99 3374 202 28 1 chr12 47279154 47279846 -97002643 - MER67C LTR ERV1 0 710 1 264 238 13 60 chr12 47279846 47279952 -97002537 + (TA)n Simple_repeat Simple_repeat 45 144 0 324 241 23 0 chr12 47279997 47280084 -97002405 + L1ME4a LINE L1 5966 6054 -67 2817 7 0 0 chr12 47280252 47280555 -97001934 + AluYa5 SINE Alu 1 303 -8 486 309 87 23 chr12 47281239 47281471 -97001018 + MIR SINE MIR 4 258 -4 880 157 0 11 chr12 47282084 47282262 -97000227 + CT-rich Low_complexity Low_complexity 4 179 0 22 0 0 0 chr12 47283041 47283063 -96999426 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr12 47283111 47283134 -96999355 + (TA)n Simple_repeat Simple_repeat 2 24 0 426 150 64 168 chr12 47283164 47283342 -96999147 - MIR SINE MIR -45 163 5 3873 100 2 12 chr12 47283603 47284174 -96998315 - L1PB1 LINE L1 -1 6150 5586 966 274 50 32 chr12 47284260 47284640 -96997849 + L1MC4 LINE L1 7516 7902 -140 22 0 0 0 chr12 47284699 47284721 -96997768 + AT_rich Low_complexity Low_complexity 1 22 0 1053 240 125 46 chr12 47285966 47286333 -96996156 + MLT1I LTR MaLR 7 402 -7 218 313 24 24 chr12 47287862 47287945 -96994544 + MIR SINE MIR 124 206 -56 329 381 32 0 chr12 47288021 47288147 -96994342 - L2 LINE L2 -10 3262 3133 258 180 70 120 chr12 47288570 47288670 -96993819 - MIR3 SINE MIR -3 205 111 1220 171 186 4 chr12 47289318 47289592 -96992897 - L1MC1 LINE L1 0 6333 6010 3186 125 40 89 chr12 47289620 47290252 -96992237 - L1PA16 LINE L1 0 6166 5566 2624 122 21 14 chr12 47290646 47291071 -96991418 - MSTA LTR MaLR 0 428 1 263 143 0 0 chr12 47291965 47292007 -96990482 - L1MB1 LINE L1 0 6168 6127 2689 239 50 13 chr12 47292007 47294204 -96988285 - L1ME1 LINE L1 -19 6147 3367 2173 119 7 0 chr12 47294204 47294506 -96987983 - AluSx SINE Alu -8 304 1 2689 239 50 13 chr12 47294506 47295293 -96987196 - L1ME1 LINE L1 -2799 3367 2611 881 184 12 152 chr12 47295722 47296058 -96986431 - AluSq SINE Alu -14 289 1 2684 35 0 16 chr12 47296064 47296377 -96986112 - AluY SINE Alu -3 308 1 414 0 0 0 chr12 47296452 47296498 -96985991 + (TTA)n Simple_repeat Simple_repeat 3 48 0 6540 65 0 1 chr12 47296498 47297330 -96985159 - L1PA7 LINE L1 -18 6136 5306 684 54 0 0 chr12 47297329 47297421 -96985068 + L1PA7 LINE L1 5215 5306 -840 * 24 0 0 0 chr12 47297628 47297652 -96984837 + AT_rich Low_complexity Low_complexity 1 24 0 408 276 48 7 chr12 47297931 47298076 -96984413 + L1ME1 LINE L1 713 863 -5533 2770 206 54 20 chr12 47298081 47299108 -96983381 + L1ME1 LINE L1 4674 5757 -478 2491 207 21 49 chr12 47299108 47299678 -96982811 - MLT2B3 LTR ERVL 0 554 1 2770 206 54 20 chr12 47299678 47299960 -96982529 + L1ME1 LINE L1 5757 6028 -207 * 5018 154 70 16 chr12 47299951 47300619 -96981870 + L1MA8 LINE L1 5264 6003 -288 2078 100 48 0 chr12 47300619 47300908 -96981581 + AluSc SINE Alu 1 303 -6 5018 154 70 16 chr12 47300908 47301209 -96981280 + L1MA8 LINE L1 6003 6286 -5 448 244 55 75 chr12 47301204 47301475 -96981014 + L1MA10 LINE L1 5926 6334 0 * 542 340 45 5 chr12 47301953 47302184 -96980305 + MIR SINE MIR 5 246 -16 491 270 82 0 chr12 47303234 47303393 -96979096 - MLT1K LTR MaLR -8 580 409 365 367 0 8 chr12 47303495 47303615 -96978874 - MLT1K LTR MaLR -373 215 97 190 306 32 0 chr12 47304046 47304108 -96978381 + MIR SINE MIR 78 141 -121 218 262 0 0 chr12 47304147 47304189 -96978300 + L2 LINE L2 3254 3295 -18 360 341 8 8 chr12 47304274 47304406 -96978083 + L2 LINE L2 3182 3313 0 998 169 62 0 chr12 47305757 47305935 -96976554 - MER20 DNA MER1_type -1 218 30 8527 93 22 31 chr12 47306106 47307957 -96974532 - L1PA8A LINE L1 -55 6076 4248 2571 34 3 0 chr12 47307957 47308251 -96974238 + AluY SINE Alu 1 295 -16 8527 93 22 31 chr12 47308251 47308542 -96973947 - L1PA8A LINE L1 -1883 4248 3956 249 277 43 11 chr12 47309649 47309743 -96972746 + MER5A DNA MER1_type 3 99 -90 1218 195 93 16 chr12 47309778 47310091 -96972398 - MLT1J1 LTR MaLR -104 342 6 435 325 52 45 chr12 47310231 47310520 -96971969 - LTR67 LTR ERVL -266 291 1 415 300 131 9 chr12 47310606 47310956 -96971533 + L1M4 LINE L1 2178 2570 -3576 4112 258 112 28 chr12 47311076 47312640 -96969849 + L2 LINE L2 1292 2992 -321 2984 318 116 21 chr12 47312886 47315210 -96967279 + L2 LINE L2 725 3271 -1 985 208 37 28 chr12 47315268 47315484 -96967005 + MER20 DNA MER1_type 2 219 0 409 233 48 0 chr12 47315540 47315643 -96966846 + MIR SINE MIR 107 214 -48 25 0 0 0 chr12 47315953 47315978 -96966511 + AT_rich Low_complexity Low_complexity 1 25 0 325 284 127 86 chr12 47316061 47316353 -96966136 - L2 LINE L2 -665 2649 2346 1123 231 101 20 chr12 47316986 47317333 -96965156 + MLT1D LTR MaLR 1 375 -130 1093 99 7 0 chr12 47317338 47317489 -96965000 + MLT2B2 LTR ERVL 322 473 -42 314 140 0 0 chr12 47317539 47317589 -96964900 + MLT2B2 LTR ERVL 465 514 -6 603 333 106 19 chr12 47317595 47317974 -96964515 - L2 LINE L2 -601 2713 2302 333 131 0 0 chr12 47318135 47318196 -96964293 + (CA)n Simple_repeat Simple_repeat 2 62 0 277 259 79 22 chr12 47318214 47318353 -96964136 - L1ME4a LINE L1 -224 5897 5751 1463 177 88 3 chr12 47318369 47318652 -96963837 + L1MC1 LINE L1 6019 6325 -8 465 71 0 0 chr12 47318653 47318723 -96963766 + (TG)n Simple_repeat Simple_repeat 1 70 0 225 300 0 0 chr12 47318743 47318803 -96963686 - L1ME4a LINE L1 -2149 5659 5600 1857 154 0 24 chr12 47318838 47319130 -96963359 + AluJb SINE Alu 6 290 -22 739 252 74 79 chr12 47319953 47320410 -96962079 + MLT1C LTR MaLR 8 462 -5 503 245 86 29 chr12 47321215 47321460 -96961029 + L1ME4a LINE L1 5790 6048 -73 210 360 80 0 chr12 47322036 47322136 -96960353 + L2 LINE L2 3149 3256 -16 240 200 0 0 chr12 47323377 47323427 -96959062 + (TA)n Simple_repeat Simple_repeat 2 51 0 692 292 41 45 chr12 47323686 47323929 -96958560 + MIR SINE MIR 10 251 -11 239 116 0 0 chr12 47325271 47325314 -96957175 - L1MC4 LINE L1 -1341 6701 6659 1647 177 48 7 chr12 47326090 47326384 -96956105 - AluSx SINE Alu -6 306 1 550 307 112 15 chr12 47326566 47326771 -96955718 - MIR SINE MIR -19 243 19 314 272 126 33 chr12 47327641 47327944 -96954545 + L1ME3A LINE L1 4873 5216 -930 2901 151 17 4 chr12 47327944 47328474 -96954015 + L1MB3 LINE L1 5647 6183 0 314 272 126 33 chr12 47328474 47328516 -96953973 + L1ME3A LINE L1 5216 5253 -893 326 308 110 55 chr12 47328578 47328942 -96953547 + L1ME3A LINE L1 5293 5676 -2132 1022 205 70 86 chr12 47329106 47329324 -96953165 + L1ME3A LINE L1 5703 5914 -256 2124 141 30 15 chr12 47329324 47329729 -96952760 - L1MB8 LINE L1 0 6178 5768 1022 205 70 86 chr12 47329729 47329895 -96952594 + L1ME3A LINE L1 5914 6081 -89 330 87 0 0 chr12 47329950 47329996 -96952493 + (TA)n Simple_repeat Simple_repeat 1 46 0 349 242 33 22 chr12 47330017 47330108 -96952381 + MIR SINE MIR 119 210 -52 25 0 0 0 chr12 47330162 47330187 -96952302 + AT_rich Low_complexity Low_complexity 1 25 0 220 256 31 108 chr12 47331166 47331295 -96951194 + L2 LINE L2 3144 3262 -10 2418 78 0 3 chr12 47331569 47331876 -96950613 - AluY SINE Alu -5 306 1 659 297 74 0 chr12 47331957 47332132 -96950357 - MER91A DNA MER1_type 0 196 9 290 376 58 35 chr12 47332140 47332313 -96950176 + MIR SINE MIR 16 192 -70 281 180 20 0 chr12 47332891 47332941 -96949548 + 5S rRNA rRNA 1 51 -70 2315 84 32 29 chr12 47333331 47333675 -96948814 + THE1C LTR MaLR 31 375 0 334 352 75 51 chr12 47333866 47334119 -96948370 - L2 LINE L2 0 3272 3014 2284 153 67 47 chr12 47334299 47334794 -96947695 + MLT1D LTR MaLR 1 505 0 201 315 56 22 chr12 47334798 47334887 -96947602 - L2 LINE L2 -39 3274 3183 2885 6 0 0 chr12 47335045 47335356 -96947133 + AluYa5 SINE Alu 1 311 0 724 243 231 15 chr12 47335577 47335845 -96946644 + MER102b DNA MER1_type 1 326 -15 687 286 47 28 chr12 47335930 47336185 -96946304 - MIR SINE MIR -1 261 2 231 288 185 19 chr12 47336855 47337024 -96945465 - MIR3 SINE MIR -61 147 2 381 245 101 31 chr12 47338897 47339056 -96943433 - MIR SINE MIR -11 251 82 1987 136 7 3 chr12 47339185 47339469 -96943020 + AluSx SINE Alu 1 288 -24 318 42 0 21 chr12 47339469 47339517 -96942972 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 235 226 218 32 chr12 47340492 47340616 -96941873 - L3 LINE CR1 -1 1576 1430 315 0 0 0 chr12 47340794 47340829 -96941660 + (TG)n Simple_repeat Simple_repeat 1 35 0 288 0 0 0 chr12 47340828 47340860 -96941629 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 752 314 146 40 chr12 47340989 47341544 -96940945 - L3 LINE CR1 -171 1406 793 264 77 0 0 chr12 47343712 47343751 -96938738 + (CA)n Simple_repeat Simple_repeat 2 40 0 199 299 85 55 chr12 47345601 47345765 -96936724 - L2 LINE L2 -2800 514 346 637 251 77 5 chr12 47346021 47346216 -96936273 + MER3 DNA MER1_type 1 209 0 213 271 17 0 chr12 47346784 47346843 -96935646 - MIR SINE MIR 0 262 203 24 0 0 0 chr12 47347140 47347164 -96935325 + AT_rich Low_complexity Low_complexity 1 24 0 226 246 43 0 chr12 47348092 47348161 -96934328 + (TA)n Simple_repeat Simple_repeat 2 73 0 21 0 0 0 chr12 47348223 47348244 -96934245 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 47348305 47348326 -96934163 + AT_rich Low_complexity Low_complexity 1 21 0 420 20 0 0 chr12 47348880 47348929 -96933560 + (TA)n Simple_repeat Simple_repeat 1 49 0 257 244 13 51 chr12 47349193 47349271 -96933218 - MIR SINE MIR -1 261 187 3101 82 23 14 chr12 47349596 47350036 -96932453 + MLT2A1 LTR ERVL 1 444 0 22 56 0 0 chr12 47350690 47350726 -96931763 + AT_rich Low_complexity Low_complexity 1 36 0 224 108 86 11 chr12 47350726 47350819 -96931670 + (TTAA)n Simple_repeat Simple_repeat 2 101 0 194 349 0 15 chr12 47351339 47351405 -96931084 - L2 LINE L2 -19 3253 3189 23 0 0 0 chr12 47351420 47351443 -96931046 + AT_rich Low_complexity Low_complexity 1 23 0 559 269 36 12 chr12 47351589 47351756 -96930733 + MER5B DNA MER1_type 1 171 -7 230 286 0 0 chr12 47351757 47351813 -96930676 + MIR SINE MIR 199 254 -8 601 276 7 28 chr12 47352771 47352952 -96929537 + MLT1F LTR MaLR 1 221 -374 243 224 45 60 chr12 47352948 47353015 -96929474 - MLT1H1 LTR MaLR -361 194 129 * 614 225 132 41 chr12 47353028 47353376 -96929113 + MLT1F LTR MaLR 176 523 -19 246 369 10 0 chr12 47353496 47353599 -96928890 - MIR SINE MIR -107 155 52 492 271 100 0 chr12 47353672 47353812 -96928677 - MER58B DNA MER1_type 0 341 188 23 0 0 0 chr12 47353994 47354017 -96928472 + AT_rich Low_complexity Low_complexity 1 23 0 418 109 0 0 chr12 47355307 47355393 -96927096 - AluJ/FRAM SINE Alu 0 315 230 526 240 8 8 chr12 47357578 47357699 -96924790 + L2 LINE L2 3192 3312 -1 21 36 0 0 chr12 47361739 47361767 -96920722 + AT_rich Low_complexity Low_complexity 1 28 0 327 49 0 0 chr12 47361807 47361848 -96920641 + (TG)n Simple_repeat Simple_repeat 2 42 0 337 302 63 24 chr12 47362322 47362448 -96920041 - L2 LINE L2 -6 3266 3136 2145 197 55 2 chr12 47362514 47362987 -96919502 - L1PB1 LINE L1 -3194 2952 2455 9415 191 18 15 chr12 47362991 47365815 -96916674 + L1PB1 LINE L1 2962 5791 -360 354 91 0 0 chr12 47365839 47365894 -96916595 + (TA)n Simple_repeat Simple_repeat 2 56 0 2404 114 8 3 chr12 47365894 47366262 -96916227 + L1PB1 LINE L1 5782 6151 0 575 238 62 38 chr12 47366312 47366472 -96916017 - FRAM SINE Alu -2 164 1 6531 139 16 7 chr12 47366610 47367721 -96914768 - Tigger1 DNA MER2_type 0 2418 1298 * 6850 121 44 18 chr12 47367717 47368856 -96913633 - Tigger1 DNA MER2_type -1249 1169 2 751 242 63 16 chr12 47368859 47369049 -96913440 - MIR SINE MIR -48 214 16 957 210 0 0 chr12 47369277 47369444 -96913045 + AluJb SINE Alu 131 297 -15 986 178 24 29 chr12 47369539 47369747 -96912742 + MER20 DNA MER1_type 12 218 -1 322 308 62 26 chr12 47369935 47370130 -96912359 - L2 LINE L2 -1153 2161 1960 288 228 196 0 chr12 47370137 47370229 -96912260 + MLT1J2 LTR MaLR 32 141 -309 558 268 72 10 chr12 47370270 47370479 -96912010 + MLT1J2 LTR MaLR 204 425 -25 201 361 28 0 chr12 47371004 47371076 -96911413 + MIR3 SINE MIR 15 88 -120 225 400 26 13 chr12 47371203 47371358 -96911131 + MLT1J2 LTR MaLR 195 351 -198 * 335 213 205 31 chr12 47371347 47371474 -96911015 + MLT1H LTR MaLR 382 530 -19 377 310 35 0 chr12 47371491 47371633 -96910856 + MIR SINE MIR 92 238 -24 299 198 38 75 chr12 47371663 47371769 -96910720 - L2 LINE L2 -1922 1392 1291 572 167 11 150 chr12 47371774 47371954 -96910535 - THE1C LTR MaLR 0 375 221 927 169 31 36 chr12 47375054 47375279 -96907210 - THE1C LTR MaLR -151 224 1 331 360 90 28 chr12 47375497 47375819 -96906670 - L2 LINE L2 -2298 1016 675 1928 137 156 13 chr12 47375821 47376194 -96906295 - MSTA LTR MaLR 0 428 3 857 198 103 109 chr12 47376552 47376766 -96905723 + L1MC5 LINE L1 6684 6898 -1063 1926 156 6 33 chr12 47376766 47377131 -96905358 - THE1A LTR MaLR 0 355 1 857 198 103 109 chr12 47377131 47377410 -96905079 + L1MC5 LINE L1 6898 7174 -787 2665 105 5 0 chr12 47377642 47378015 -96904474 - THE1C LTR MaLR 0 375 1 823 130 0 70 chr12 47378015 47378215 -96904274 - THE1C-int LTR MaLR 0 1580 1395 1676 124 0 4 chr12 47378415 47378656 -96903833 + AluJb SINE Alu 73 312 0 405 0 0 0 chr12 47378658 47378703 -96903786 + (TA)n Simple_repeat Simple_repeat 1 45 0 574 226 153 29 chr12 47378703 47379017 -96903472 + L1MC5 LINE L1 7311 7663 -298 735 171 0 0 chr12 47379032 47379149 -96903340 - FLAM_C SINE Alu -16 117 1 532 216 0 0 chr12 47379161 47379258 -96903231 + FAM SINE Alu 6 102 -83 326 213 107 33 chr12 47380658 47380808 -96901681 + L1MC5 LINE L1 7771 7931 -30 2185 71 54 24 chr12 47382780 47383074 -96899415 + AluSp SINE Alu 1 303 -10 371 318 209 7 chr12 47383271 47383573 -96898916 - L2 LINE L2 -475 2839 2477 27 0 0 0 chr12 47383881 47383908 -96898581 + AT_rich Low_complexity Low_complexity 1 27 0 183 304 0 36 chr12 47384886 47384942 -96897547 - L2 LINE L2 -532 2782 2729 902 256 82 30 chr12 47385998 47386268 -96896221 - MLT1I LTR MaLR -10 399 116 24 0 0 0 chr12 47386484 47386508 -96895981 + AT_rich Low_complexity Low_complexity 1 24 0 400 77 0 0 chr12 47386815 47386867 -96895622 - Alu SINE Alu -19 291 240 443 292 15 50 chr12 47387032 47387234 -96895255 - L2 LINE L2 -2 3311 3117 396 356 48 38 chr12 47387258 47387547 -96894942 - L2 LINE L2 -744 2570 2279 330 132 0 0 chr12 47387596 47387649 -96894840 + (TA)n Simple_repeat Simple_repeat 1 53 0 184 321 37 0 chr12 47387742 47387823 -96894666 - L2 LINE L2 -1164 2150 2067 1438 199 60 9 chr12 47387825 47388142 -96894347 - MER58B DNA MER1_type -8 333 1 1431 237 66 44 chr12 47388144 47388693 -96893796 - MLT1F1 LTR MaLR -1 566 1 557 321 216 24 chr12 47388697 47389603 -96892886 - L2 LINE L2 -1276 2038 959 275 324 88 27 chr12 47389960 47390108 -96892381 + MER5B DNA MER1_type 3 159 -19 493 259 122 70 chr12 47390155 47390525 -96891964 + MLT1F1 LTR MaLR 202 590 0 538 255 245 5 chr12 47390589 47390789 -96891700 - MIR SINE MIR -3 259 12 663 334 124 19 chr12 47390791 47391378 -96891111 + L2 LINE L2 1623 2271 -1043 558 205 60 90 chr12 47391380 47391580 -96890909 + Charlie4 DNA MER1_type 4 197 -1764 14476 26 1 2 chr12 47391583 47394081 -96888408 - L1PA8 LINE L1 -6 6166 3670 615 226 14 73 chr12 47394104 47394379 -96888110 - L1MEd LINE L1 -4931 1188 930 21 57 0 0 chr12 47394379 47394414 -96888075 + AT_rich Low_complexity Low_complexity 1 35 0 502 300 57 32 chr12 47394533 47394552 -96887937 - L1MEd LINE L1 -5282 837 820 2185 119 0 0 chr12 47394552 47394838 -96887651 + AluSg SINE Alu 1 286 -24 502 300 57 32 chr12 47394838 47395098 -96887391 - L1MEd LINE L1 -5299 820 551 874 293 22 42 chr12 47395323 47395732 -96886757 - MLT1J LTR MaLR -110 401 1 23 86 0 0 chr12 47398090 47398148 -96884341 + AT_rich Low_complexity Low_complexity 1 58 0 277 289 151 28 chr12 47398284 47398575 -96883914 - L1ME LINE L1 -360 5761 5435 2031 115 14 7 chr12 47398890 47399178 -96883311 - AluSx SINE Alu -14 298 9 192 229 66 16 chr12 47399856 47399917 -96882572 + L2 LINE L2 3205 3268 -4 226 134 0 119 chr12 47400043 47400110 -96882379 - MER53 DNA DNA -130 59 1 438 53 0 0 chr12 47401573 47401630 -96880859 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 674 182 0 0 chr12 47401637 47401747 -96880742 - FLAM_C SINE Alu -33 110 1 1357 109 5 5 chr12 47402888 47403124 -96879365 + AluSg/x SINE Alu 99 334 0 1863 133 37 10 chr12 47403559 47403853 -96878636 + AluSx SINE Alu 2 303 -9 405 349 72 21 chr12 47404210 47404445 -96878044 + L1ME LINE L1 5339 5585 -536 279 263 62 0 chr12 47404923 47405003 -96877486 - L2 LINE L2 -21 3292 3208 484 148 11 0 chr12 47405006 47405094 -96877395 + MER53 DNA DNA 1 89 -100 22 73 0 15 chr12 47405174 47405198 -96877291 + AT_rich Low_complexity Low_complexity 1 24 -43 2359 168 2 26 chr12 47405198 47405657 -96876832 - L1MB5 LINE L1 -14 6160 5713 22 73 0 15 chr12 47405657 47405700 -96876789 + AT_rich Low_complexity Low_complexity 24 67 0 368 23 0 0 chr12 47405739 47405783 -96876706 + THE1C LTR MaLR 1 44 -331 * 712 97 0 0 chr12 47405774 47405886 -96876603 + THE1B LTR MaLR 264 364 0 1348 43 0 0 chr12 47406952 47407115 -96875374 - L1MA1 LINE L1 -6 6296 6134 485 295 23 6 chr12 47407383 47407556 -96874933 - MER117 DNA MER1_type -21 176 1 388 360 118 37 chr12 47407559 47408560 -96873929 + L2 LINE L2 2170 3256 -16 2086 135 3 0 chr12 47411596 47411892 -96870597 + AluSx SINE Alu 1 297 -15 447 212 195 0 chr12 47412354 47412410 -96870079 + L1MEc LINE L1 37 81 -6315 531 45 0 0 chr12 47412410 47412476 -96870013 + (CA)n Simple_repeat Simple_repeat 1 66 0 447 212 195 0 chr12 47412476 47412537 -96869952 + L1MEc LINE L1 81 177 -6219 5350 158 54 28 chr12 47412540 47413506 -96868983 - L1MC1 LINE L1 -1 6332 5314 1895 158 32 0 chr12 47413506 47413791 -96868698 - AluSx SINE Alu -18 294 1 5350 158 54 28 chr12 47413791 47414097 -96868392 - L1MC1 LINE L1 -1019 5314 5017 * 5708 149 9 9 chr12 47414093 47415595 -96866894 - L1PA16 LINE L1 -1 6165 4659 743 298 91 54 chr12 47415597 47415949 -96866540 + L2 LINE L2 2572 2936 -378 1267 218 18 50 chr12 47415949 47416329 -96866160 + MLT1A2 LTR MaLR 1 368 -6 235 265 0 0 chr12 47416334 47416383 -96866106 + L2 LINE L2 2932 2980 -333 1322 238 67 2 chr12 47416396 47416799 -96865690 - Zaphod DNA AcHobo -1 4030 3602 1710 217 215 25 chr12 47416804 47417635 -96864854 - Zaphod DNA AcHobo -3041 990 2 221 204 0 0 chr12 47417640 47417684 -96864805 + L2 LINE L2 2990 3033 -280 233 286 0 0 chr12 47417712 47417768 -96864721 + (CA)n Simple_repeat Simple_repeat 1 56 0 304 274 40 16 chr12 47417792 47417916 -96864573 + L2 LINE L2 3084 3210 -103 2761 97 75 0 chr12 47418280 47418693 -96863796 + MLT2A2 LTR ERVL 1 444 -9 1669 154 19 4 chr12 47418790 47419056 -96863433 + AluJb SINE Alu 23 292 -20 186 328 49 0 chr12 47420088 47420149 -96862340 - L2 LINE L2 -5 3308 3245 2294 122 11 3 chr12 47420888 47421240 -96861249 - THE1A LTR MaLR 0 355 1 22 56 0 0 chr12 47421300 47421336 -96861153 + AT_rich Low_complexity Low_complexity 1 36 0 2088 122 30 13 chr12 47421339 47421642 -96860847 + AluSx SINE Alu 1 308 -4 1387 158 75 116 chr12 47421650 47422011 -96860478 - MER7A DNA MER2_type -2 344 1 23 68 0 0 chr12 47422018 47422062 -96860427 + AT_rich Low_complexity Low_complexity 1 44 0 260 23 0 23 chr12 47422127 47422171 -96860318 + L1PA4 LINE L1 6113 6155 0 993 265 28 16 chr12 47422209 47422458 -96860031 + MIR SINE MIR 9 260 -2 398 329 146 0 chr12 47423566 47423785 -96858704 + MIR SINE MIR 2 252 -10 1901 156 139 17 chr12 47423861 47424277 -96858212 - MLT1C LTR MaLR 0 467 1 2445 43 3 13 chr12 47424334 47424638 -96857851 + AluY SINE Alu 1 301 -10 198 0 0 0 chr12 47424638 47424660 -96857829 + (TA)n Simple_repeat Simple_repeat 2 23 0 1867 117 3 3 chr12 47424669 47424952 -96857537 + L1PB1 LINE L1 5864 6146 -5 275 203 13 0 chr12 47425121 47425200 -96857289 + (CA)n Simple_repeat Simple_repeat 1 80 0 792 153 8 0 chr12 47425254 47425372 -96857117 + 5S rRNA rRNA 2 120 -1 25 0 0 0 chr12 47425390 47425415 -96857074 + AT_rich Low_complexity Low_complexity 1 25 0 2475 60 0 3 chr12 47425472 47425772 -96856717 - AluY SINE Alu -12 299 1 234 319 0 0 chr12 47425824 47425893 -96856596 - L1MC/D LINE L1 -2002 5806 5738 2026 146 50 16 chr12 47425896 47426279 -96856210 - MSTD LTR MaLR 0 396 1 414 322 44 39 chr12 47426363 47427281 -96855208 - L1MC/D LINE L1 -751 5395 4735 401 95 0 158 chr12 47427282 47427377 -96855112 - MADE1 DNA Mariner 0 80 1 2108 121 0 0 chr12 47427497 47427778 -96854711 + AluSq SINE Alu 1 281 -32 194 0 0 37 chr12 47427781 47427808 -96854681 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 211 310 0 42 chr12 47427909 47427980 -96854509 - MIR SINE MIR -129 133 66 1435 71 0 0 chr12 47428058 47428228 -96854261 + AluSq SINE Alu 60 229 -84 21 0 0 0 chr12 47430148 47430169 -96852320 + AT_rich Low_complexity Low_complexity 1 21 0 2605 51 0 6 chr12 47430941 47431254 -96851235 + AluY SINE Alu 1 311 0 34 42 0 0 chr12 47431350 47431398 -96851091 + AT_rich Low_complexity Low_complexity 1 48 0 245 305 168 11 chr12 47431882 47431977 -96850512 - L2 LINE L2 -22 3250 3141 331 323 146 43 chr12 47432402 47432802 -96849687 + L2 LINE L2 2602 3074 -198 589 189 90 8 chr12 47433249 47433371 -96849118 + FLAM_A SINE Alu 2 133 0 241 241 46 35 chr12 47434523 47434610 -96847879 + MIR SINE MIR 46 133 -75 182 194 0 0 chr12 47434670 47434706 -96847783 + MIR SINE MIR 110 145 -117 977 228 47 50 chr12 47434829 47435232 -96847257 - L1MC4 LINE L1 -95 7947 7546 431 288 7 28 chr12 47435766 47435952 -96846537 - MIR SINE MIR -65 143 21 222 248 66 15 chr12 47436420 47436497 -96845992 - MIR SINE MIR -57 151 83 524 96 64 166 chr12 47436514 47436671 -96845818 + FLAM_A SINE Alu 2 142 0 197 136 0 45 chr12 47436674 47436691 -96845798 + (GAAAA)n Simple_repeat Simple_repeat 2 18 -25 2515 54 0 13 chr12 47436691 47437005 -96845484 + AluY SINE Alu 1 310 -1 197 136 0 45 chr12 47437005 47437031 -96845458 + (GAAAA)n Simple_repeat Simple_repeat 18 43 0 * 567 191 29 17 chr12 47437025 47437198 -96845291 + GA-rich Low_complexity Low_complexity 2 176 0 2145 128 0 38 chr12 47437380 47437699 -96844790 + AluSq SINE Alu 1 307 -6 330 245 21 0 chr12 47437906 47438000 -96844489 - L1M4 LINE L1 -1145 5001 4906 216 364 64 29 chr12 47438873 47439013 -96843476 - L2 LINE L2 -16 3256 3112 293 265 88 17 chr12 47439547 47439728 -96842761 + L1MC5 LINE L1 7719 7912 -49 27862 105 30 13 chr12 47439741 47444833 -96837656 + L1P3 LINE L1 1 5203 -1258 2706 71 15 0 chr12 47444835 47445159 -96837330 + L1PA7 LINE L1 5823 6151 -3 738 211 211 10 chr12 47445323 47445522 -96836967 + MER8 DNA MER2_type 1 239 0 206 349 0 0 chr12 47445952 47446015 -96836474 + MIR SINE MIR 53 115 -147 249 277 65 45 chr12 47446795 47446950 -96835539 + L2 LINE L2 3156 3313 0 669 274 20 36 chr12 47448049 47448297 -96834192 + L2 LINE L2 3070 3313 0 33 56 0 0 chr12 47448313 47448367 -96834122 + AT_rich Low_complexity Low_complexity 1 54 0 319 321 126 51 chr12 47448395 47448874 -96833615 + L1 LINE L1 3077 3584 -2562 312 167 36 24 chr12 47449077 47449161 -96833328 + L1ME4a LINE L1 5779 5863 -258 1805 172 52 20 chr12 47449418 47449770 -96832719 + MLT1A1 LTR MaLR 1 365 0 1440 146 152 85 chr12 47449930 47450109 -96832380 - MER1B DNA MER1_type -2373 337 171 2296 91 0 0 chr12 47450109 47450406 -96832083 - AluSx SINE Alu -10 302 6 1440 146 152 85 chr12 47450406 47450542 -96831947 - MER1B DNA MER1_type -2539 171 1 406 173 0 12 chr12 47450829 47450910 -96831579 + L1M4 LINE L1 4621 4700 -1446 1610 219 9 23 chr12 47451101 47451448 -96831041 - MLT1A2 LTR MaLR 0 374 33 972 171 23 17 chr12 47451481 47451656 -96830833 - MLT1A1 LTR MaLR 0 365 190 299 65 22 22 chr12 47451848 47451894 -96830595 + MLT1A1 LTR MaLR 1 46 -319 1109 135 49 16 chr12 47451973 47452158 -96830331 - MLT1A1 LTR MaLR -174 191 1 437 274 231 5 chr12 47453260 47453468 -96829021 - MIR SINE MIR -6 256 2 626 92 20 0 chr12 47453469 47453567 -96828922 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 754 253 111 5 chr12 47454452 47454642 -96827847 - MLT1I LTR MaLR 0 409 200 3515 128 12 2 chr12 47454643 47455135 -96827354 + LOR1a LTR ERV1 1 497 0 31 0 0 0 chr12 47456074 47456105 -96826384 + AT_rich Low_complexity Low_complexity 1 31 0 285 167 0 0 chr12 47456139 47456193 -96826296 + (TA)n Simple_repeat Simple_repeat 1 54 0 254 29 29 0 chr12 47456192 47456227 -96826262 + (GA)n Simple_repeat Simple_repeat 2 37 0 * 253 311 22 0 chr12 47456357 47456447 -96826042 - L2 LINE L2 0 3313 3222 823 180 0 7 chr12 47456447 47456586 -96825903 + FRAM SINE Alu 21 158 -18 908 287 127 36 chr12 47456645 47457116 -96825373 + LTR33 LTR ERVL 8 521 0 405 235 15 37 chr12 47457118 47457254 -96825235 - L2 LINE L2 -140 3173 3041 1560 187 17 10 chr12 47457548 47457837 -96824652 - AluJo SINE Alu -21 291 1 21 82 0 0 chr12 47458352 47458401 -96824088 + AT_rich Low_complexity Low_complexity 1 49 0 986 225 0 0 chr12 47458569 47458738 -96823751 + FAM SINE Alu 1 169 -6 23 0 0 0 chr12 47458739 47458762 -96823727 + AT_rich Low_complexity Low_complexity 1 23 0 252 382 55 0 chr12 47458763 47458873 -96823616 - L2 LINE L2 -16 3256 3141 26 0 0 0 chr12 47459182 47459208 -96823281 + AT_rich Low_complexity Low_complexity 1 26 0 577 265 22 22 chr12 47459417 47459553 -96822936 - L2 LINE L2 0 3272 3137 1465 222 23 7 chr12 47459590 47460048 -96822441 + MER34 LTR ERV1 1 493 -49 8149 26 2 0 chr12 47460063 47461323 -96821166 - L1PA4 LINE L1 -3 6152 4892 354 245 133 10 chr12 47461378 47461476 -96821013 + L2 LINE L2 3201 3310 -3 2615 149 94 23 chr12 47461765 47466007 -96816482 + SATR1 Satellite Satellite 1 4542 -412 755 166 21 0 chr12 47466018 47466168 -96816321 + MLT1C LTR MaLR 226 464 -3 12794 165 13 28 chr12 47466297 47466669 -96815820 - L1PA13 LINE L1 -6 7595 7219 1472 195 119 7 chr12 47466669 47466972 -96815517 - MER1B DNA MER1_type 0 337 1 12794 165 13 28 chr12 47466972 47469549 -96812940 - L1PA13 LINE L1 -382 7219 4686 2338 119 0 0 chr12 47469549 47469859 -96812630 - AluSx SINE Alu -2 310 1 12794 165 13 28 chr12 47469859 47470053 -96812436 - L1PA13 LINE L1 -2915 4686 4491 5551 238 27 10 chr12 47470056 47471655 -96810834 - L1PA13 LINE L1 -3487 4097 2471 307 281 12 81 chr12 47471678 47471838 -96810651 - L1PA13 LINE L1 -5896 1685 1537 212 316 151 29 chr12 47471863 47472002 -96810487 - MER5A DNA MER1_type -8 181 26 764 152 129 8 chr12 47472028 47472160 -96810329 + MER5A DNA MER1_type 1 148 -41 6647 225 58 9 chr12 47472166 47473608 -96808881 - L1PA13 LINE L1 -6068 1513 1 912 252 102 58 chr12 47473634 47474027 -96808462 + MLT1J LTR MaLR 102 511 0 211 338 106 0 chr12 47474087 47474229 -96808260 - L2 LINE L2 -1226 2088 1932 287 333 125 7 chr12 47474248 47474392 -96808097 - MER5A DNA MER1_type -3 186 26 969 159 104 0 chr12 47474418 47474581 -96807908 + MER5A DNA MER1_type 1 180 -9 1418 185 53 90 chr12 47474585 47474964 -96807525 + MLT1A1 LTR MaLR 1 365 0 319 284 63 24 chr12 47475073 47475200 -96807289 - MIR SINE MIR -122 140 9 187 363 101 22 chr12 47475242 47475421 -96807068 - L2 LINE L2 -1436 1878 1686 608 340 90 19 chr12 47475481 47475849 -96806640 + L3 LINE CR1 1115 1508 -69 2293 114 0 0 chr12 47477253 47477559 -96804930 - AluSx SINE Alu -6 306 1 328 102 0 0 chr12 47477572 47477621 -96804868 - FLAM SINE Alu -2 131 83 199 255 191 21 chr12 47478131 47478225 -96804264 + MIR SINE MIR 18 127 -81 630 312 81 0 chr12 47479033 47479126 -96803363 + MIR SINE MIR 6 90 -172 2305 94 16 0 chr12 47479126 47479433 -96803056 - AluSp SINE Alu -1 312 1 630 312 81 0 chr12 47479433 47479560 -96802929 + MIR SINE MIR 90 244 -18 21 0 0 0 chr12 47480453 47480474 -96802015 + AT_rich Low_complexity Low_complexity 1 21 0 251 93 56 0 chr12 47480531 47480585 -96801904 + T-rich Low_complexity Low_complexity 4 60 0 352 256 79 61 chr12 47482182 47482346 -96800143 + L1M2 LINE L1 866 1032 -5817 2311 85 0 33 chr12 47482566 47482873 -96799616 + AluSc SINE Alu 1 297 -12 22 56 0 0 chr12 47483148 47483184 -96799305 + AT_rich Low_complexity Low_complexity 1 36 0 239 388 0 0 chr12 47483223 47483321 -96799168 + L2 LINE L2 3158 3255 -17 4735 73 39 3 chr12 47483321 47483908 -96798581 + LTR14B LTR ERVK 1 608 0 189 107 0 0 chr12 47483917 47483945 -96798544 + (A)n Simple_repeat Simple_repeat 1 28 0 264 104 45 30 chr12 47484489 47484556 -96797933 + GA-rich Low_complexity Low_complexity 4 71 0 4376 236 47 57 chr12 47484564 47485969 -96796520 + L1M3d LINE L1 16 876 -5021 2129 131 6 6 chr12 47485969 47486281 -96796208 + AluSx SINE Alu 1 312 0 4376 236 47 57 chr12 47486281 47486782 -96795707 + L1M3d LINE L1 876 1381 -4516 2017 142 4 0 chr12 47486916 47487249 -96795240 + AluSx SINE Alu 1 334 0 1937 125 10 42 chr12 47487814 47487982 -96794507 - AluSx SINE Alu -9 303 148 2118 98 0 4 chr12 47487982 47488258 -96794231 - AluSc SINE Alu -8 301 27 1937 125 10 42 chr12 47488258 47488402 -96794087 - AluSx SINE Alu -164 148 1 687 293 49 9 chr12 47489277 47489502 -96792987 - MIR SINE MIR 0 262 29 2328 100 0 7 chr12 47489505 47489806 -96792683 - AluSx SINE Alu -13 299 1 305 362 75 5 chr12 47490509 47490697 -96791792 - L3b LINE CR1 -97 1486 1286 22 35 0 0 chr12 47491259 47491288 -96791201 + AT_rich Low_complexity Low_complexity 1 29 0 203 361 78 23 chr12 47492038 47492257 -96790232 - L2 LINE L2 -390 2924 2694 1080 191 27 113 chr12 47492268 47492490 -96789999 + MER67B LTR ERV1 220 538 -123 2108 125 3 0 chr12 47492490 47492786 -96789703 + AluSx SINE Alu 15 311 -1 1080 191 27 113 chr12 47492786 47492901 -96789588 + MER67B LTR ERV1 538 661 0 869 195 7 0 chr12 47492901 47493055 -96789434 - MER69A DNA AcHobo -22 155 1 188 287 51 57 chr12 47493059 47493216 -96789273 - L2 LINE L2 -79 3234 3079 1887 161 10 0 chr12 47493236 47493540 -96788949 + AluSx SINE Alu 4 310 -2 307 176 14 54 chr12 47493661 47493735 -96788754 - L2 LINE L2 -461 2853 2783 989 251 94 79 chr12 47493761 47494059 -96788430 - MLT1H1 LTR MaLR -1 554 245 1614 102 36 13 chr12 47494059 47494284 -96788205 + MER30 DNA MER1_type 1 230 0 989 251 94 79 chr12 47494284 47494464 -96788025 - MLT1H1 LTR MaLR -310 245 69 322 64 0 218 chr12 47494553 47494605 -96787884 - HY5 scRNA scRNA -23 61 29 2179 108 0 0 chr12 47494605 47494927 -96787562 + AluSx SINE Alu 5 326 0 322 64 0 218 chr12 47494927 47494951 -96787538 - HY5 scRNA scRNA -55 29 1 410 336 16 0 chr12 47494951 47495076 -96787413 - L2 LINE L2 -638 2676 2550 263 345 22 61 chr12 47495267 47495496 -96786993 - L2 LINE L2 -626 2688 2469 1819 157 48 3 chr12 47495731 47496025 -96786464 + AluJo SINE Alu 1 307 -5 2079 142 7 3 chr12 47496222 47496532 -96785957 + AluSx SINE Alu 1 311 -1 839 108 0 0 chr12 47496576 47496687 -96785802 - AluJb SINE Alu -23 289 179 772 190 0 36 chr12 47497086 47497223 -96785266 + FLAM_A SINE Alu 1 132 -1 711 149 0 0 chr12 47497490 47497611 -96784878 + (TCCC)n Simple_repeat Simple_repeat 4 124 0 294 130 14 29 chr12 47497611 47497680 -96784809 + T-rich Low_complexity Low_complexity 3 70 0 189 275 0 7 chr12 47497994 47498051 -96784438 + MIR SINE MIR 27 82 -126 630 284 59 77 chr12 47498051 47498534 -96783955 + MLT1J LTR MaLR 1 442 -8 334 200 133 29 chr12 47498541 47498646 -96783843 + MIR SINE MIR 77 192 -70 395 172 0 0 chr12 47498714 47498778 -96783711 + L2 LINE L2 3245 3308 -5 235 198 12 81 chr12 47498848 47498934 -96783555 + MIR SINE MIR 173 252 -10 350 245 167 0 chr12 47498936 47499038 -96783451 + L2 LINE L2 3148 3266 -6 307 279 108 10 chr12 47499075 47499199 -96783290 - MIR SINE MIR -78 130 38 2461 85 0 19 chr12 47499246 47499565 -96782924 - AluSq SINE Alu 0 313 1 25 0 0 0 chr12 47500311 47500336 -96782153 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr12 47500515 47500552 -96781937 + AT_rich Low_complexity Low_complexity 1 37 0 2352 97 0 0 chr12 47501120 47501420 -96781069 + AluSc SINE Alu 1 300 -9 2333 105 3 9 chr12 47501723 47502038 -96780451 - AluSp SINE Alu 0 313 1 1496 165 81 133 chr12 47502539 47503036 -96779453 + LTR45B LTR ERV1 19 489 0 2083 95 48 17 chr12 47503126 47503420 -96779069 + AluSx SINE Alu 1 303 -9 417 239 152 0 chr12 47503537 47503675 -96778814 + MER103 DNA DNA 1 159 -7 2227 91 7 3 chr12 47503837 47504134 -96778355 - AluSp SINE Alu -15 298 1 488 298 272 21 chr12 47504145 47504524 -96777965 - L2 LINE L2 -21 3292 2819 1246 197 121 155 chr12 47504603 47505434 -96777055 - L1MD3 LINE L1 -11 7984 6941 1021 138 0 52 chr12 47505434 47505608 -96776881 - AluJo SINE Alu -108 204 40 1246 197 121 155 chr12 47505608 47506012 -96776477 - L1MD3 LINE L1 -1054 6941 6525 318 114 0 0 chr12 47506321 47506365 -96776124 + Alu SINE Alu 1 44 -258 25 0 0 0 chr12 47506365 47506390 -96776099 + AT_rich Low_complexity Low_complexity 1 25 0 184 273 114 23 chr12 47506425 47506513 -96775976 - L2 LINE L2 -1240 2074 1979 1353 178 139 8 chr12 47506588 47506709 -96775780 + AluJo SINE Alu 1 105 -207 252 0 0 0 chr12 47506709 47506737 -96775752 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1353 178 139 8 chr12 47506737 47506874 -96775615 + AluJo SINE Alu 105 293 -19 327 338 34 20 chr12 47507065 47507213 -96775276 - L2 LINE L2 -208 3064 2915 261 373 127 0 chr12 47507341 47507483 -96775006 - L2 LINE L2 -559 2755 2596 * 1024 264 211 14 chr12 47507480 47507916 -96774573 + L2 LINE L2 913 1434 -1880 1723 137 67 7 chr12 47507916 47508216 -96774273 + L1MB2 LINE L1 5852 6169 -2 440 200 0 0 chr12 47509350 47509425 -96773064 - MER58 DNA MER1_type 0 2420 2346 2376 76 0 26 chr12 47509664 47509968 -96772521 - AluSc SINE Alu -13 296 1 380 297 26 26 chr12 47510821 47510976 -96771513 + ERVL LTR ERVL 2494 2648 -3116 353 234 0 0 chr12 47511141 47511205 -96771284 + MIR SINE MIR 2 65 -197 687 259 185 62 chr12 47511206 47511838 -96770651 + L1MC4 LINE L1 7331 8040 -2 445 346 17 0 chr12 47511840 47512019 -96770470 + L2 LINE L2 1465 1646 -1668 644 277 22 30 chr12 47512080 47512311 -96770178 - L2 LINE L2 -8 3305 3077 415 336 64 16 chr12 47512348 47512473 -96770016 - MER91A DNA MER1_type -65 131 1 1526 238 67 12 chr12 47512502 47513036 -96769453 - L2 LINE L2 -525 2789 2265 1444 233 107 101 chr12 47513043 47513205 -96769284 + L2 LINE L2 1783 1942 -1372 2429 96 0 3 chr12 47513205 47513518 -96768971 + AluSq SINE Alu 1 312 -1 1444 233 107 101 chr12 47513518 47514148 -96768341 + L2 LINE L2 1942 2580 -734 593 73 6 79 chr12 47514154 47514480 -96768009 + (TA)n Simple_repeat Simple_repeat 1 302 0 328 231 28 65 chr12 47514480 47514588 -96767901 - L1MC4 LINE L1 -1339 6703 6600 183 80 0 0 chr12 47514596 47514621 -96767868 + (TA)n Simple_repeat Simple_repeat 2 26 0 2297 108 0 0 chr12 47514690 47514985 -96767504 - AluSx SINE Alu -17 295 1 1265 272 73 27 chr12 47514986 47515263 -96767226 + L2 LINE L2 2598 2861 -452 1697 221 52 29 chr12 47515263 47515422 -96767067 + MSTD LTR MaLR 3 157 -239 1835 122 47 4 chr12 47515422 47515700 -96766789 - AluSg SINE Alu -20 290 1 1697 221 52 29 chr12 47515700 47515925 -96766564 + MSTD LTR MaLR 157 396 0 1265 272 73 27 chr12 47515925 47516332 -96766157 + L2 LINE L2 2861 3299 -14 1971 123 4 0 chr12 47516336 47516613 -96765876 - AluSx SINE Alu -9 303 26 896 217 157 23 chr12 47516697 47516997 -96765492 + MLT1F LTR MaLR 1 340 -202 7276 171 18 32 chr12 47517012 47517639 -96764850 + L1PA16 LINE L1 3756 4391 -1775 1922 151 10 10 chr12 47517639 47517950 -96764539 + AluJb SINE Alu 1 311 -1 7276 171 18 32 chr12 47517950 47518320 -96764169 + L1PA16 LINE L1 4391 4765 -1401 2173 113 0 0 chr12 47518320 47518603 -96763886 + AluSx SINE Alu 1 283 -29 430 31 31 0 chr12 47518606 47518670 -96763819 + (TAAAA)n Simple_repeat Simple_repeat 3 68 0 7276 171 18 32 chr12 47518670 47520122 -96762367 + L1PA16 LINE L1 4767 6166 0 3303 55 33 0 chr12 47520164 47520563 -96761926 - L1PA10 LINE L1 -13 6155 5744 434 250 0 11 chr12 47520564 47520656 -96761833 - MER45 DNA AcHobo -862 91 1 209 327 115 0 chr12 47520663 47520776 -96761713 - L2 LINE L2 -1095 2219 2094 2421 67 0 0 chr12 47521281 47521580 -96760909 + AluY SINE Alu 1 299 -12 668 299 109 0 chr12 47521697 47521918 -96760571 + MIR SINE MIR 13 257 -5 763 191 0 35 chr12 47522268 47522409 -96760080 + AluJo SINE Alu 39 174 -138 1041 170 27 5 chr12 47525866 47526054 -96756435 - AluJb SINE Alu -2 310 119 869 197 13 13 chr12 47526433 47526585 -96755904 - FRAM SINE Alu -24 152 1 1735 162 19 32 chr12 47526810 47527125 -96755364 - AluJb SINE Alu -1 311 1 1918 173 13 6 chr12 47528105 47528417 -96754072 + MER21B LTR ERV1 1 314 -549 1587 210 26 23 chr12 47528416 47528764 -96753725 + MER21B LTR ERV1 511 859 -4 * 347 367 17 17 chr12 47528935 47529115 -96753374 - L2 LINE L2 -481 2833 2654 2245 99 3 3 chr12 47529359 47529662 -96752827 - AluY SINE Alu -8 303 1 2020 98 19 0 chr12 47529673 47529938 -96752551 - AluSq SINE Alu -43 270 1 3629 160 68 120 chr12 47529996 47530952 -96751537 + MER21A LTR ERV1 1 906 -25 324 248 137 26 chr12 47531263 47531380 -96751109 + L2 LINE L2 3184 3313 0 193 164 18 18 chr12 47531855 47531910 -96750579 + (TA)n Simple_repeat Simple_repeat 1 55 0 1599 197 24 0 chr12 47532390 47532684 -96749805 + AluJo SINE Alu 1 301 -11 191 309 0 44 chr12 47532883 47532951 -96749538 + L2 LINE L2 3188 3252 -20 2194 85 0 3 chr12 47532976 47533258 -96749231 - AluY SINE Alu -18 293 13 34 0 0 0 chr12 47534321 47534355 -96748134 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr12 47534431 47534459 -96748030 + AT_rich Low_complexity Low_complexity 1 28 0 2156 83 0 7 chr12 47534461 47534737 -96747752 - AluSx SINE Alu -4 308 35 1410 166 25 65 chr12 47535595 47535920 -96746569 - AluJo SINE Alu 0 312 1 2441 77 0 10 chr12 47536857 47537169 -96745320 - AluSc SINE Alu 0 309 1 360 308 50 68 chr12 47537265 47537486 -96745003 + MIR SINE MIR 31 247 -15 275 317 231 0 chr12 47537625 47537729 -96744760 + L2 LINE L2 3137 3264 -8 186 224 30 45 chr12 47537793 47537860 -96744629 + MIR SINE MIR 86 151 -111 204 135 67 34 chr12 47537889 47537978 -96744511 + (TATAA)n Simple_repeat Simple_repeat 3 94 0 1462 162 4 0 chr12 47538376 47538604 -96743885 + AluJb SINE Alu 70 298 -14 467 384 14 0 chr12 47539719 47539865 -96742624 - L2 LINE L2 0 3272 3125 794 212 149 40 chr12 47541123 47541425 -96741064 - L1ME2 LINE L1 -4 6160 5826 38135 87 12 15 chr12 47543717 47545621 -96736868 - L1PA6 LINE L1 -5 6149 4241 2371 103 0 0 chr12 47545621 47545932 -96736557 - AluSx SINE Alu -1 311 1 38135 87 12 15 chr12 47545932 47550187 -96732302 - L1PA6 LINE L1 -1913 4241 11 1830 161 0 14 chr12 47550514 47550806 -96731683 + AluJo SINE Alu 1 288 -24 2289 106 0 7 chr12 47551028 47551331 -96731158 - AluSq SINE Alu -12 301 1 29 47 0 0 chr12 47552809 47552852 -96729637 + AT_rich Low_complexity Low_complexity 1 43 0 283 318 56 24 chr12 47553080 47553206 -96729283 + MIR SINE MIR 32 161 -101 1205 126 0 0 chr12 47554241 47554415 -96728074 - AluSg/x SINE Alu -7 305 132 2237 86 21 3 chr12 47554416 47554707 -96727782 - AluSx SINE Alu -15 297 2 512 307 62 0 chr12 47554805 47554984 -96727505 - MIR SINE MIR -27 235 46 1494 193 50 63 chr12 47555016 47555395 -96727094 - MLT1A2 LTR MaLR 0 374 1 219 265 206 0 chr12 47555708 47555776 -96726713 - MIR SINE MIR -70 192 111 1955 128 49 0 chr12 47555910 47556198 -96726291 - AluSg SINE Alu -7 303 2 213 235 76 50 chr12 47556488 47556607 -96725882 + MIR SINE MIR 95 216 -46 1641 178 0 32 chr12 47557875 47558184 -96724305 - AluJo SINE Alu -13 299 1 180 0 0 0 chr12 47558243 47558263 -96724226 + (A)n Simple_repeat Simple_repeat 1 20 0 671 193 64 0 chr12 47558263 47558372 -96724117 - FLAM_A SINE Alu -17 116 1 816 181 57 28 chr12 47558401 47558578 -96723911 + AluJb SINE Alu 130 311 -1 516 291 88 0 chr12 47558631 47558779 -96723710 + MIR3 SINE MIR 20 180 -28 1151 262 172 11 chr12 47558786 47559229 -96723260 - MLT1H1 LTR MaLR -6 549 36 271 221 39 39 chr12 47561178 47561255 -96721234 + MIR3 SINE MIR 123 199 -9 2364 84 0 0 chr12 47561372 47561656 -96720833 + AluSc SINE Alu 5 288 -21 1494 83 39 15 chr12 47562784 47562989 -96719500 + AluSc SINE Alu 84 293 -16 2052 108 7 16 chr12 47563300 47563605 -96718884 - AluSx SINE Alu -10 302 1 22 70 0 0 chr12 47564250 47564293 -96718196 + AT_rich Low_complexity Low_complexity 1 43 0 226 274 147 100 chr12 47565553 47565743 -96716746 + MIR SINE MIR 47 245 -17 196 343 41 0 chr12 47566236 47566309 -96716180 + L2 LINE L2 3107 3182 -90 227 252 19 58 chr12 47566807 47566910 -96715579 + Charlie4 DNA MER1_type 1859 1957 -4 1488 184 39 23 chr12 47568253 47568433 -96714056 - AluJo SINE Alu 0 312 123 218 0 95 0 chr12 47568433 47568475 -96714014 + T-rich Low_complexity Low_complexity 2 47 0 1488 184 39 23 chr12 47568475 47568599 -96713890 - AluJo SINE Alu -189 123 3 521 232 165 75 chr12 47569541 47569780 -96712709 - L1ME4a LINE L1 -1 6120 5831 951 69 14 62 chr12 47569780 47569903 -96712586 - L1MB4 LINE L1 -2 6178 6061 2448 66 3 3 chr12 47569903 47570205 -96712284 - AluSp SINE Alu -11 302 1 951 69 14 62 chr12 47570205 47570225 -96712264 - L1MB4 LINE L1 -119 6061 6042 521 232 165 75 chr12 47570225 47570373 -96712116 - L1ME4a LINE L1 -290 5831 5698 1295 197 48 48 chr12 47570698 47570993 -96711496 - AluJo SINE Alu -17 295 1 226 356 0 50 chr12 47571451 47571611 -96710878 - MIR3 SINE MIR -19 189 38 408 279 57 14 chr12 47572950 47573090 -96709399 - MIR SINE MIR 0 262 117 215 119 48 24 chr12 47573382 47573424 -96709065 - L2 LINE L2 -30 3283 3241 22 88 0 0 chr12 47573772 47573829 -96708660 + AT_rich Low_complexity Low_complexity 1 57 0 1219 173 5 5 chr12 47574082 47574284 -96708205 + AluJo SINE Alu 87 288 -24 342 0 0 0 chr12 47574287 47574325 -96708164 + (TG)n Simple_repeat Simple_repeat 2 39 0 1954 151 51 54 chr12 47574576 47574967 -96707522 - MLT1B LTR MaLR 0 390 1 2207 99 0 7 chr12 47574989 47575281 -96707208 + AluSx SINE Alu 1 290 -22 422 245 95 41 chr12 47575551 47575698 -96706791 - L1MC4a LINE L1 -1952 5856 5702 2086 134 3 0 chr12 47575722 47576027 -96706462 + AluSx SINE Alu 3 308 0 696 214 54 6 chr12 47577394 47577562 -96704927 - MER5B DNA MER1_type 0 178 3 445 257 138 20 chr12 47577600 47577752 -96704737 - MER5B DNA MER1_type 0 178 9 234 308 0 0 chr12 47577767 47577832 -96704657 - MIR SINE MIR -57 151 87 1619 128 128 8 chr12 47578243 47578501 -96703988 - AluSg1 SINE Alu -20 289 1 385 155 42 0 chr12 47578885 47578956 -96703533 + MADE1 DNA Mariner 6 79 -1 183 80 0 0 chr12 47579668 47579693 -96702796 + (T)n Simple_repeat Simple_repeat 1 25 0 3551 152 37 13 chr12 47580129 47580784 -96701705 + L1MA9 LINE L1 5485 6122 -44 445 113 183 26 chr12 47580711 47580826 -96701663 + L1MA9 LINE L1 6180 6312 0 * 669 157 0 19 chr12 47580957 47581065 -96701424 + MIR SINE MIR 47 152 -110 1397 293 166 14 chr12 47581444 47582534 -96699955 + L2 LINE L2 1959 3215 -98 1084 289 146 48 chr12 47582612 47582681 -96699808 + L2 LINE L2 1697 1758 -1556 2325 101 3 0 chr12 47582681 47582989 -96699500 - AluSg SINE Alu -1 309 1 1084 289 146 48 chr12 47582989 47583794 -96698695 + L2 LINE L2 1758 2657 -657 577 299 128 31 chr12 47583835 47584256 -96698233 + L2 LINE L2 2824 3285 -28 4545 245 133 67 chr12 47584335 47585446 -96697043 - HAL1 LINE L1 0 2507 1471 1498 161 20 31 chr12 47585446 47585738 -96696751 - AluJo SINE Alu -23 289 1 4545 245 133 67 chr12 47585738 47586969 -96695520 - HAL1 LINE L1 -1036 1471 10 219 319 160 0 chr12 47587121 47587240 -96695249 + MIR3 SINE MIR 40 177 -31 241 262 41 8 chr12 47588304 47588426 -96694063 + (TA)n Simple_repeat Simple_repeat 2 127 0 180 111 0 0 chr12 47588537 47588564 -96693925 + (TG)n Simple_repeat Simple_repeat 1 27 0 333 294 42 25 chr12 47588647 47588766 -96693723 - L2 LINE L2 0 3313 3193 2452 169 44 5 chr12 47588813 47589221 -96693268 - MSTB LTR MaLR -2 424 1 1117 308 136 32 chr12 47589278 47590094 -96692395 - L2 LINE L2 -556 2758 1858 280 226 97 77 chr12 47590230 47590385 -96692104 - L1ME4a LINE L1 -1 6120 5963 253 312 26 0 chr12 47590950 47591027 -96691462 + L2 LINE L2 3235 3313 0 229 308 116 55 chr12 47591245 47591391 -96691098 + L2 LINE L2 2506 2660 -654 3336 140 81 41 chr12 47591411 47592039 -96690450 - MER39B LTR ERV1 0 653 1 2232 74 47 3 chr12 47592943 47593239 -96689250 + AluSc SINE Alu 1 309 0 673 170 6 0 chr12 47593659 47593766 -96688723 - FLAM_A SINE Alu -20 122 19 720 298 44 18 chr12 47594205 47594433 -96688056 - MIR SINE MIR -3 259 26 445 264 206 32 chr12 47594459 47594736 -96687753 - L2 LINE L2 -2 3311 2987 689 282 58 54 chr12 47594751 47595010 -96687479 + MIR SINE MIR 2 261 -1 447 280 74 53 chr12 47595023 47595266 -96687223 - L2 LINE L2 -745 2569 2322 2556 124 92 34 chr12 47595706 47596207 -96686282 - L1MB3 LINE L1 -11 6172 5643 1592 71 13 22 chr12 47596221 47596445 -96686044 - AluY SINE Alu -2 309 88 21 0 0 0 chr12 47596517 47596538 -96685951 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr12 47596623 47596651 -96685838 + AT_rich Low_complexity Low_complexity 1 28 0 1917 128 31 7 chr12 47596652 47596942 -96685547 - AluSx SINE Alu -15 297 1 292 291 145 8 chr12 47596942 47597059 -96685430 - L1MB3 LINE L1 -505 5616 5484 834 210 30 99 chr12 47597377 47597739 -96684750 + MER46C DNA MER2_type 1 337 -1 1637 210 50 9 chr12 47598253 47598676 -96683813 + L1MB4 LINE L1 4619 5058 -1088 1412 66 0 0 chr12 47598684 47598851 -96683638 + AluSp SINE Alu 140 306 -7 4233 178 40 38 chr12 47598851 47599976 -96682513 + L1MB4 LINE L1 5049 6177 -3 445 306 40 8 chr12 47600713 47600837 -96681652 - L2 LINE L2 -18 3254 3127 2207 64 10 73 chr12 47601051 47601364 -96681125 - AluY SINE Alu -18 293 1 209 356 35 9 chr12 47601640 47601755 -96680734 - L2 LINE L2 -829 2485 2368 25 0 0 0 chr12 47602276 47602301 -96680188 + AT_rich Low_complexity Low_complexity 1 25 0 326 326 87 37 chr12 47602404 47602646 -96679843 - MIR SINE MIR -1 261 8 1793 137 7 27 chr12 47603023 47603322 -96679167 - AluSx SINE Alu 0 312 20 1612 139 19 12 chr12 47603332 47603590 -96678899 - AluSx SINE Alu 0 312 53 299 293 89 75 chr12 47604457 47604637 -96677852 - MIR SINE MIR -71 191 11 2123 123 7 10 chr12 47607052 47607362 -96675127 + AluSg SINE Alu 1 309 -1 1611 176 34 20 chr12 47607664 47607959 -96674530 - AluJb SINE Alu -13 299 1 250 250 42 0 chr12 47608037 47608109 -96674380 - L1MC5 LINE L1 -385 7576 7502 1473 144 69 3 chr12 47608492 47608783 -96673706 + MER33 DNA MER1_type 7 316 -8 1850 142 0 75 chr12 47608791 47609123 -96673366 + AluJo SINE Alu 1 307 -5 4639 255 124 27 chr12 47614182 47615502 -96666987 - L2 LINE L2 -48 3265 1683 201 39 0 0 chr12 47615502 47615528 -96666961 + (TG)n Simple_repeat Simple_repeat 2 27 0 4639 255 124 27 chr12 47615528 47616150 -96666339 - L2 LINE L2 -1630 1683 1122 458 338 134 44 chr12 47616154 47616967 -96665522 - L2 LINE L2 -2008 1306 421 532 323 127 23 chr12 47618351 47618698 -96663791 + L3 LINE CR1 212 594 -983 412 333 158 29 chr12 47618700 47619174 -96663315 + L3 LINE CR1 801 1394 -183 312 234 101 55 chr12 47620711 47620872 -96661617 + MIR3 SINE MIR 12 178 -67 321 359 72 18 chr12 47621633 47621800 -96660689 - MER5B DNA MER1_type -2 176 1 747 152 36 0 chr12 47621828 47621940 -96660549 + AluJo SINE Alu 21 136 -176 311 278 11 11 chr12 47621943 47622033 -96660456 - L1MC4 LINE L1 -1339 6703 6614 934 147 38 38 chr12 47622186 47622370 -96660119 - MLT2C1 LTR ERVL -213 184 1 770 222 56 10 chr12 47622577 47622775 -96659714 + MER3 DNA MER1_type 1 207 -2 343 320 193 34 chr12 47622962 47623547 -96658942 + L2 LINE L2 2055 2732 -582 288 323 111 51 chr12 47623626 47623960 -96658529 - L2 LINE L2 -1 3271 2918 612 147 223 62 chr12 47624313 47624586 -96657903 - Charlie1a DNA MER1_type -1 1454 1138 207 69 0 0 chr12 47624589 47624618 -96657871 + (TA)n Simple_repeat Simple_repeat 1 29 0 25854 40 2 1 chr12 47624618 47628567 -96653922 - L1PA5 LINE L1 -15 6139 2184 4953 193 46 10 chr12 47628569 47629640 -96652849 - Charlie1a DNA MER1_type -302 1153 45 240 322 51 34 chr12 47629697 47629933 -96652556 - L2 LINE L2 -199 3073 2834 579 283 48 39 chr12 47631024 47631254 -96651235 - MIR SINE MIR -11 251 20 2385 74 17 0 chr12 47631417 47631714 -96650775 - AluSp SINE Alu -11 302 1 542 276 108 22 chr12 47634785 47635053 -96647436 + L1ME4a LINE L1 5500 5790 -331 293 240 82 41 chr12 47635182 47635328 -96647161 + L1ME4a LINE L1 5970 6121 0 21 0 0 0 chr12 47637232 47637253 -96645236 + AT_rich Low_complexity Low_complexity 1 21 0 327 297 149 36 chr12 47639247 47639469 -96643020 - MIR SINE MIR 0 262 16 242 54 0 27 chr12 47639755 47639792 -96642697 + (TC)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr12 47639792 47639814 -96642675 + (CA)n Simple_repeat Simple_repeat 1 22 0 537 301 77 61 chr12 47640053 47640379 -96642110 - MLT1J1 LTR MaLR -7 439 109 483 212 73 0 chr12 47640452 47640589 -96641900 + MER104 DNA Tc2 30 176 -4 1043 255 220 28 chr12 47641724 47642234 -96640255 - MLT1L LTR MaLR -7 608 1 21 36 0 0 chr12 47642531 47642559 -96639930 + AT_rich Low_complexity Low_complexity 1 28 0 1178 168 103 0 chr12 47642989 47643203 -96639286 + MER46A DNA MER2_type 1 236 0 849 298 62 11 chr12 47643345 47643778 -96638711 - L1M4 LINE L1 -1854 4292 3838 4034 114 102 40 chr12 47643919 47645024 -96637465 + Tigger3b DNA MER2_type 3 1232 0 1460 136 87 19 chr12 47645054 47645363 -96637126 + L1MA8 LINE L1 5920 6249 -42 25 31 0 0 chr12 47645367 47645399 -96637090 + AT_rich Low_complexity Low_complexity 1 32 0 476 252 27 41 chr12 47646699 47646846 -96635643 + MER5A DNA MER1_type 44 188 -1 260 208 38 0 chr12 47648134 47648187 -96634302 - L2 LINE L2 0 3272 3218 528 263 143 31 chr12 47648696 47648955 -96633534 + L1MC4a LINE L1 5548 5835 -1973 549 293 103 17 chr12 47649391 47649623 -96632866 - MIR SINE MIR -2 260 9 243 321 24 0 chr12 47650168 47650252 -96632237 - L2 LINE L2 -1 3271 3186 729 279 119 45 chr12 47651069 47651582 -96630907 - LTR67 LTR ERVL -4 553 3 260 284 15 0 chr12 47651706 47651773 -96630716 + L2 LINE L2 3205 3272 0 1598 138 232 9 chr12 47651814 47652163 -96630326 - MSTA LTR MaLR 0 428 2 215 263 18 0 chr12 47652599 47652656 -96629833 + MIR SINE MIR 184 241 -21 470 332 36 16 chr12 47653087 47653280 -96629209 - MIR SINE MIR -43 219 23 1608 165 48 58 chr12 47653281 47653674 -96628815 - MSTD LTR MaLR -7 389 1 245 240 88 32 chr12 47655010 47655135 -96627354 - L1ME LINE L1 -220 5901 5770 198 254 36 0 chr12 47656234 47656289 -96626200 + L2 LINE L2 3193 3249 -64 752 254 78 20 chr12 47656364 47656608 -96625881 + MIR SINE MIR 2 259 -3 184 375 31 0 chr12 47657685 47657749 -96624740 + MIR SINE MIR 30 95 -113 245 250 68 57 chr12 47657818 47657994 -96624495 - MER20B DNA MER1_type -604 179 2 273 235 0 98 chr12 47658319 47658421 -96624068 - MER77 LTR ERV1 -237 368 277 * 413 238 113 50 chr12 47658388 47658548 -96623941 - MER21B LTR ERV1 -553 310 141 387 227 0 62 chr12 47658579 47658707 -96623782 - MER77 LTR ERV1 -409 196 77 396 299 261 13 chr12 47658966 47659540 -96622949 - L2 LINE L2 -129 3184 2464 1002 253 100 76 chr12 47659687 47659925 -96622564 - L1MC5 LINE L1 -51 7910 7679 1681 177 13 13 chr12 47659925 47660224 -96622265 + AluJo SINE Alu 1 299 -13 1002 253 100 76 chr12 47660224 47660796 -96621693 - L1MC5 LINE L1 -282 7679 7081 2927 243 113 27 chr12 47661248 47662660 -96619829 + HAL1 LINE L1 975 2507 0 567 315 71 10 chr12 47662779 47662976 -96619513 + L3 LINE CR1 1348 1556 -21 2289 134 51 23 chr12 47663830 47664264 -96618225 - Tigger2 DNA MER2_type 0 2718 2273 413 143 0 14 chr12 47664254 47664324 -96618165 - Tigger2 DNA MER2_type -2649 69 1 * 25 75 0 0 chr12 47666159 47666212 -96616277 + AT_rich Low_complexity Low_complexity 1 53 0 2239 80 3 13 chr12 47666264 47666564 -96615925 - AluSx SINE Alu -15 297 1 296 203 0 0 chr12 47666575 47666649 -96615840 - L1MB7 LINE L1 0 6184 6111 485 88 0 50 chr12 47666654 47666734 -96615755 - L1MB7 LINE L1 -185 5999 5924 3934 186 64 9 chr12 47666789 47667652 -96614837 - L1MB7 LINE L1 -41 6143 5182 1265 203 79 48 chr12 47667652 47668006 -96614483 - MLT1A1 LTR MaLR 0 365 1 3934 186 64 9 chr12 47668006 47668469 -96614020 - L1MB7 LINE L1 -1002 5182 4746 5269 150 9 6 chr12 47668787 47670010 -96612479 + L1PA16 LINE L1 4937 6164 -2 930 94 8 0 chr12 47670054 47670182 -96612307 - L1PA10 LINE L1 -13 6155 6027 1677 163 48 56 chr12 47670706 47671098 -96611391 - MLT1B LTR MaLR -1 389 1 2203 99 0 7 chr12 47671120 47671412 -96611077 + AluSx SINE Alu 1 290 -22 358 245 95 41 chr12 47671682 47671829 -96610660 - L1MC4a LINE L1 -1952 5856 5702 2099 134 3 0 chr12 47671853 47672158 -96610331 + AluSx SINE Alu 3 308 0 17839 55 14 9 chr12 47672632 47675183 -96607306 - L1P LINE L1 -845 5301 2740 184 375 31 0 chr12 47676003 47676067 -96606422 + MIR SINE MIR 30 95 -113 245 250 68 57 chr12 47676136 47676312 -96606177 - MER20B DNA MER1_type -604 179 2 273 235 0 98 chr12 47676637 47676739 -96605750 - MER77 LTR ERV1 -237 368 277 * 374 250 113 50 chr12 47676706 47676866 -96605623 - MER21B LTR ERV1 -553 310 141 387 227 0 62 chr12 47676897 47677025 -96605464 - MER77 LTR ERV1 -409 196 77 386 300 261 13 chr12 47677288 47677862 -96604627 - L2 LINE L2 -129 3184 2464 995 248 104 74 chr12 47678009 47678247 -96604242 - L1MC5 LINE L1 -51 7910 7680 1681 177 13 13 chr12 47678247 47678546 -96603943 + AluJo SINE Alu 1 299 -13 995 248 104 74 chr12 47678546 47679021 -96603468 - L1MC5 LINE L1 -281 7680 7176 2927 243 113 27 chr12 47679570 47680982 -96601507 + HAL1 LINE L1 975 2507 0 567 315 71 10 chr12 47681101 47681298 -96601191 + L3 LINE CR1 1348 1556 -21 2289 134 51 23 chr12 47682152 47682586 -96599903 - Tigger2 DNA MER2_type 0 2718 2273 413 143 0 14 chr12 47682576 47682646 -96599843 - Tigger2 DNA MER2_type -2649 69 1 * 25 75 0 0 chr12 47684480 47684533 -96597956 + AT_rich Low_complexity Low_complexity 1 53 0 2115 98 0 57 chr12 47684585 47684900 -96597589 - AluSx SINE Alu -15 297 1 1530 184 67 8 chr12 47685023 47685290 -96597199 - AluJo SINE Alu -29 283 1 25 0 0 0 chr12 47686443 47686468 -96596021 + AT_rich Low_complexity Low_complexity 1 25 0 398 328 0 52 chr12 47687643 47687726 -96594763 + MIR SINE MIR 20 95 -113 2909 133 79 4 chr12 47687726 47688246 -96594243 + MER89 LTR ERV1 1 559 0 398 328 0 52 chr12 47688246 47688296 -96594193 + MIR SINE MIR 95 146 -62 2141 113 14 3 chr12 47688528 47688821 -96593668 + AluSq SINE Alu 1 296 -17 1585 198 65 55 chr12 47688963 47689419 -96593070 + Charlie1b DNA MER1_type 6 469 -2292 2030 127 7 3 chr12 47689419 47689711 -96592778 - AluSx SINE Alu -19 293 1 1585 198 65 55 chr12 47689711 47689745 -96592744 + Charlie1b DNA MER1_type 469 501 -22 339 85 0 0 chr12 47690086 47690133 -96592356 + (TG)n Simple_repeat Simple_repeat 2 48 0 1875 140 45 34 chr12 47690221 47690578 -96591911 + MER46B DNA MER2_type 1 236 0 203 196 118 0 chr12 47690749 47690800 -96591689 + L2 LINE L2 3257 3313 0 660 134 0 0 chr12 47691492 47691589 -96590900 - AluSg/x SINE Alu -10 302 206 289 287 36 31 chr12 47691603 47691798 -96590691 - L1M4 LINE L1 -2903 3243 3048 282 273 45 0 chr12 47691798 47691864 -96590625 - L2 LINE L2 -7 3306 3238 283 233 17 35 chr12 47691894 47692010 -96590479 - L1M4 LINE L1 -3125 3021 2908 1867 96 0 4 chr12 47692077 47692316 -96590173 - AluY SINE Alu -5 306 69 310 314 44 38 chr12 47692377 47692536 -96589953 - L1M4 LINE L1 -3311 2835 2676 1986 109 25 21 chr12 47692580 47692884 -96589605 - AluSx SINE Alu 0 305 1 4011 210 113 42 chr12 47693553 47694188 -96588301 + L1M3e LINE L1 777 1366 -5016 1669 127 94 0 chr12 47694188 47694461 -96588028 + L1MA2 LINE L1 5974 6279 -25 387 0 0 0 chr12 47694461 47694504 -96587985 + (TA)n Simple_repeat Simple_repeat 2 44 0 1669 127 94 0 chr12 47694504 47694529 -96587960 + L1MA2 LINE L1 6279 6300 -4 4011 210 113 42 chr12 47694529 47695014 -96587475 + L1M3e LINE L1 1366 1815 -4567 1409 171 84 7 chr12 47695014 47695157 -96587332 + AluJb SINE Alu 3 134 -178 414 0 0 0 chr12 47695157 47695203 -96587286 + (CAT)n Simple_repeat Simple_repeat 2 47 0 1409 171 84 7 chr12 47695203 47695334 -96587155 + AluJb SINE Alu 134 298 -14 4011 210 113 42 chr12 47695334 47696570 -96585919 + L1M3e LINE L1 1815 3246 -3136 207 191 0 79 chr12 47697162 47697225 -96585264 + A-rich Low_complexity Low_complexity 2 59 0 16107 118 57 6 chr12 47697452 47700244 -96582245 + L1PBa LINE L1 126 3062 -3800 1965 241 14 2 chr12 47700236 47700813 -96581676 + L1 LINE L1 3447 4030 -2832 * 587 147 0 0 chr12 47700805 47700907 -96581582 + L1 LINE L1 5475 5576 -1286 * 1477 151 128 4 chr12 47701102 47701360 -96581129 - AluJo SINE Alu -12 290 1 913 273 72 14 chr12 47701362 47701721 -96580768 - L1ME3A LINE L1 -288 5865 5486 1252 117 112 0 chr12 47701733 47701930 -96580559 - AluSg/x SINE Alu -9 303 85 302 267 0 0 chr12 47701941 47702055 -96580434 - L1ME3A LINE L1 -682 5465 5352 1419 270 220 52 chr12 47702186 47703396 -96579093 - L2 LINE L2 -290 3023 1615 818 195 130 5 chr12 47703592 47703777 -96578712 + MER6B DNA MER2_type 2 209 -1 336 306 61 13 chr12 47703828 47704057 -96578432 - L1ME3A LINE L1 -2409 3720 3481 384 318 87 34 chr12 47704071 47704330 -96578159 - L1M4c LINE L1 -919 1824 1345 615 249 88 68 chr12 47704356 47704855 -96577634 - L1ME3A LINE L1 -5011 1108 600 2228 127 7 0 chr12 47705054 47705362 -96577127 + AluSx SINE Alu 1 310 -2 278 277 20 8 chr12 47705739 47705865 -96576624 + MLT1L LTR MaLR 97 288 -327 2029 145 3 0 chr12 47706817 47707113 -96575376 + AluSx SINE Alu 2 298 -14 25 0 0 0 chr12 47707359 47707384 -96575105 + AT_rich Low_complexity Low_complexity 1 25 0 1914 113 23 46 chr12 47708655 47708957 -96573532 - AluSq SINE Alu -18 295 1 243 385 0 12 chr12 47711360 47711443 -96571046 + MIR SINE MIR 20 101 -107 1306 194 73 3 chr12 47711443 47711824 -96570665 + MER89 LTR ERV1 1 408 -151 2290 152 126 10 chr12 47712584 47713085 -96569404 - MER89 LTR ERV1 0 559 1 22 56 0 0 chr12 47713652 47713688 -96568801 + AT_rich Low_complexity Low_complexity 1 36 0 1449 155 128 4 chr12 47717351 47717609 -96564880 - AluJo SINE Alu -12 290 1 350 277 48 0 chr12 47717638 47717793 -96564696 - L1ME3A LINE L1 -323 5847 5684 1575 147 0 108 chr12 47718206 47718540 -96563949 - AluJb SINE Alu -14 298 1 1589 151 10 17 chr12 47718998 47719289 -96563200 + AluSx SINE Alu 8 296 -16 1577 213 31 56 chr12 47719293 47719814 -96562675 + L1ME4a LINE L1 4896 5403 -743 659 201 88 40 chr12 47720008 47720336 -96562153 + L1MC5 LINE L1 7587 7930 -31 305 225 84 115 chr12 47720337 47720528 -96561961 + L1ME4a LINE L1 5931 6115 -6 645 174 17 52 chr12 47720568 47720740 -96561749 - FRAM SINE Alu 0 166 1 2068 156 3 17 chr12 47721015 47721368 -96561121 + MER7A DNA MER2_type 1 346 0 427 111 93 117 chr12 47723063 47723225 -96559264 - MER53 DNA DNA -19 170 13 315 357 205 13 chr12 47723357 47723581 -96558908 - L2 LINE L2 -1 3271 3005 1561 177 113 45 chr12 47723649 47724117 -96558372 - MLT1D LTR MaLR -5 500 1 538 266 115 47 chr12 47724150 47724559 -96557930 - L2 LINE L2 -430 2884 2448 244 308 51 26 chr12 47725166 47725283 -96557206 + MIR SINE MIR 20 139 -69 1657 179 3 61 chr12 47725587 47725735 -96556754 + AluJo SINE Alu 1 123 -189 1643 186 0 42 chr12 47725735 47726042 -96556447 + AluJo SINE Alu 3 296 -16 1657 179 3 61 chr12 47726042 47726206 -96556283 + AluJo SINE Alu 123 295 -17 348 329 29 14 chr12 47727689 47727829 -96554660 + L1M4 LINE L1 4027 4168 -1978 2898 239 38 4 chr12 47727851 47728788 -96553701 - L1MCa LINE L1 -3136 3805 2879 1378 169 19 67 chr12 47728827 47729199 -96553290 - L1MA7 LINE L1 -2 6289 5936 1590 248 93 34 chr12 47729232 47729386 -96553103 - L1MCa LINE L1 -4320 2802 2658 1805 150 20 7 chr12 47729386 47729680 -96552809 - AluSx SINE Alu -14 298 1 1590 248 93 34 chr12 47729680 47730625 -96551864 - L1MCa LINE L1 -4464 2658 1430 377 282 10 0 chr12 47730690 47730793 -96551696 - L1MCa LINE L1 -5498 925 822 309 291 141 54 chr12 47730978 47731355 -96551134 - L1MCa LINE L1 -5912 511 168 225 83 0 0 chr12 47731355 47731391 -96551098 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2092 66 0 31 chr12 47731394 47731680 -96550809 - AluY SINE Alu -34 277 1 309 291 141 54 chr12 47731680 47731745 -96550744 - L1MCa LINE L1 -6256 167 26 675 195 24 60 chr12 47732161 47732412 -96550077 - L1M4 LINE L1 -980 5166 4925 358 190 0 4 chr12 47732422 47732517 -96549972 - L1M4 LINE L1 -1815 4331 4238 1603 153 61 17 chr12 47732520 47732866 -96549623 + MER46B DNA MER2_type 1 236 0 438 251 28 22 chr12 47732986 47733165 -96549324 + L1 LINE L1 4389 4568 -1578 240 228 59 22 chr12 47733199 47733335 -96549154 + (TA)n Simple_repeat Simple_repeat 1 141 0 11433 121 6 45 chr12 47733335 47735307 -96547182 + Tigger1 DNA MER2_type 1 1895 -523 1251 166 18 0 chr12 47735306 47735529 -96546960 + Tigger1 DNA MER2_type 2178 2404 -14 * 228 67 0 0 chr12 47735532 47735562 -96546927 + (TA)n Simple_repeat Simple_repeat 2 31 0 2096 194 11 34 chr12 47735563 47736028 -96546461 - MLT2B1 LTR ERVL -63 457 4 330 374 29 7 chr12 47736029 47736168 -96546321 + L1 LINE L1 4577 4718 -1428 3552 151 59 23 chr12 47736271 47736978 -96545511 + Tigger1 DNA MER2_type 73 805 -1613 * 4697 136 13 1 chr12 47736963 47737748 -96544741 + Tigger1 DNA MER2_type 1624 2417 -1 690 153 100 13 chr12 47737750 47737900 -96544589 + MER58B DNA MER1_type 179 341 0 337 202 90 0 chr12 47738078 47738167 -96544322 + MIR SINE MIR 110 206 -56 1050 145 11 74 chr12 47738359 47738686 -96543803 + MLT1C LTR MaLR 110 467 0 272 381 83 11 chr12 47738717 47738898 -96543591 - L2 LINE L2 -208 3105 2912 318 325 25 51 chr12 47738948 47739185 -96543304 + MLT1J LTR MaLR 262 492 -19 294 312 253 4 chr12 47739314 47739551 -96542938 - L2 LINE L2 -469 2845 2550 394 311 59 42 chr12 47739615 47739853 -96542636 - L2 LINE L2 -744 2570 2329 4103 82 30 0 chr12 47739856 47740455 -96542034 + L1MA1 LINE L1 5408 6024 -278 1987 77 90 23 chr12 47740576 47740886 -96541603 + L1MA1 LINE L1 5972 6302 0 886 260 172 36 chr12 47740893 47741336 -96541153 - L2 LINE L2 -973 2341 1839 1826 137 81 3 chr12 47741945 47742230 -96540259 - AluSx SINE Alu -5 307 1 457 309 50 17 chr12 47742948 47743129 -96539360 + MER5A DNA MER1_type 3 189 0 180 200 0 0 chr12 47743192 47743232 -96539257 + (TA)n Simple_repeat Simple_repeat 2 41 0 24 0 0 0 chr12 47743941 47743965 -96538524 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr12 47744885 47744910 -96537579 + (A)n Simple_repeat Simple_repeat 1 25 0 364 327 18 0 chr12 47745293 47745403 -96537086 + MIR SINE MIR 34 145 -63 254 270 0 0 chr12 47745783 47745846 -96536643 + MIR SINE MIR 71 133 -129 496 322 27 0 chr12 47745950 47746096 -96536393 - MIR3 SINE MIR -7 201 52 279 213 0 62 chr12 47747076 47747156 -96535333 + MER5A DNA MER1_type 38 112 -77 254 219 16 16 chr12 47747279 47747343 -96535146 - MLT1H LTR MaLR -434 115 52 289 286 20 51 chr12 47747780 47747878 -96534611 + MER5B DNA MER1_type 84 178 0 536 235 144 20 chr12 47748007 47748160 -96534329 + MER5A DNA MER1_type 18 189 0 182 315 24 39 chr12 47748436 47748519 -96533970 - L2 LINE L2 -78 3235 3153 6350 117 184 23 chr12 47748519 47749619 -96532870 + MER52C LTR ERV1 1 1278 0 182 315 24 39 chr12 47749619 47749662 -96532827 - L2 LINE L2 -160 3153 3111 541 219 94 0 chr12 47749674 47749802 -96532687 - MER5A DNA MER1_type 0 189 50 184 324 59 29 chr12 47749948 47750050 -96532439 - L2 LINE L2 -361 2911 2807 643 287 30 78 chr12 47750339 47750607 -96531882 - L2 LINE L2 0 3272 3018 457 301 115 46 chr12 47750603 47751051 -96531438 + L2 LINE L2 2773 3291 -22 * 435 332 92 24 chr12 47751223 47751560 -96530929 - L2 LINE L2 -557 2757 2398 2124 98 0 34 chr12 47751920 47752215 -96530274 - AluY SINE Alu -16 295 11 300 284 86 37 chr12 47753123 47753285 -96529204 - MIR SINE MIR -56 206 37 6176 79 86 1 chr12 47753390 47754383 -96528106 - L1P2 LINE L1 -630 5525 4441 202 278 19 0 chr12 47754686 47754740 -96527749 + MIR SINE MIR 82 136 -126 24 32 0 0 chr12 47755454 47755485 -96527004 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 47755599 47755620 -96526869 + AT_rich Low_complexity Low_complexity 1 21 0 296 276 38 38 chr12 47755620 47755725 -96526764 - MIR SINE MIR -77 185 81 * 1076 234 18 0 chr12 47755710 47755937 -96526552 + MIR SINE MIR 15 245 -17 180 286 41 0 chr12 47756343 47756392 -96526097 + MIR SINE MIR 93 143 -65 285 29 0 0 chr12 47757325 47757359 -96525130 + (TG)n Simple_repeat Simple_repeat 2 35 0 4195 58 8 0 chr12 47757529 47758030 -96524459 + L1PA6 LINE L1 5639 6143 -11 183 275 25 117 chr12 47759425 47759545 -96522944 + MIR SINE MIR 123 231 -31 943 201 22 65 chr12 47759553 47759782 -96522707 + MER20 DNA MER1_type 1 219 0 218 240 188 0 chr12 47760254 47760350 -96522139 - MIR SINE MIR 0 262 149 4593 31 0 0 chr12 47760732 47761244 -96521245 - L1PA4 LINE L1 0 6155 5644 231 282 28 0 chr12 47761276 47761347 -96521142 + L1ME4a LINE L1 5975 6047 -74 238 158 0 0 chr12 47761386 47761424 -96521065 + MER1B DNA MER1_type 1 38 -299 * 1335 164 0 19 chr12 47761423 47761637 -96520852 + MER1B DNA MER1_type 130 339 0 1795 146 41 25 chr12 47761898 47762214 -96520275 + MSTB LTR MaLR 106 426 0 9861 172 21 7 chr12 47762214 47763841 -96518648 + MSTB-int LTR MaLR 1 1651 0 953 134 14 110 chr12 47763841 47764050 -96518439 + MSTB LTR MaLR 1 189 -237 1053 172 40 68 chr12 47764094 47764344 -96518145 + MSTB LTR MaLR 185 426 0 660 211 27 0 chr12 47764344 47764490 -96517999 - MER58 DNA MER1_type -2224 196 47 2165 106 6 10 chr12 47765766 47766077 -96516412 + AluSx SINE Alu 1 310 -2 1428 262 19 21 chr12 47766163 47766675 -96515814 + L1M3d LINE L1 704 1214 -4677 * 1552 217 49 0 chr12 47766653 47766998 -96515491 + L1M4c LINE L1 876 1237 -4735 417 220 48 12 chr12 47767124 47767292 -96515197 + CT-rich Low_complexity Low_complexity 3 176 0 786 238 0 0 chr12 47767293 47767545 -96514944 + C-rich Low_complexity Low_complexity 1 252 0 1086 122 0 0 chr12 47767547 47767727 -96514762 + (C)n Simple_repeat Simple_repeat 1 180 0 232 137 39 0 chr12 47767799 47767850 -96514639 + CT-rich Low_complexity Low_complexity 4 56 0 240 59 0 0 chr12 47767857 47767891 -96514598 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 287 275 84 49 chr12 47769924 47770066 -96512423 - MIR SINE MIR -66 142 22 594 247 129 0 chr12 47772388 47772566 -96509923 - MER102a DNA MER1_type -11 319 119 1897 146 20 7 chr12 47772863 47773158 -96509331 + AluJb SINE Alu 1 299 -13 27 0 0 0 chr12 47773512 47773539 -96508950 + AT_rich Low_complexity Low_complexity 1 27 0 234 291 35 0 chr12 47773817 47773903 -96508586 + L2 LINE L2 1860 1948 -1366 230 286 119 0 chr12 47774415 47774499 -96507990 + L2 LINE L2 2261 2354 -960 349 335 67 32 chr12 47774604 47775074 -96507415 + L2 LINE L2 2526 3046 -226 339 200 176 0 chr12 47775107 47775192 -96507297 + L2 LINE L2 3158 3257 -15 258 105 0 0 chr12 47775192 47775230 -96507259 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 2055 148 0 0 chr12 47777865 47778168 -96504321 + AluSx SINE Alu 1 303 -9 519 258 288 13 chr12 47778907 47779268 -96503221 - L2 LINE L2 -136 3177 2709 240 248 183 22 chr12 47779263 47779400 -96503089 - MIR3 SINE MIR -35 173 15 * 266 277 43 21 chr12 47780087 47780181 -96502308 + MIR SINE MIR 136 231 -31 247 304 161 9 chr12 47780298 47780410 -96502079 - MER5A DNA MER1_type 0 189 61 201 314 129 16 chr12 47780300 47780424 -96502065 + MER5A DNA MER1_type 17 154 -35 * 237 217 0 0 chr12 47780831 47780877 -96501612 + MER5B DNA MER1_type 9 54 -124 206 289 0 0 chr12 47781688 47781740 -96500749 - L2 LINE L2 0 3272 3221 2223 99 10 0 chr12 47781998 47782292 -96500197 - AluSp SINE Alu -16 297 1 1034 200 78 30 chr12 47783227 47783537 -96498952 + MLT1D LTR MaLR 180 595 0 409 287 90 12 chr12 47783810 47783977 -96498512 + MIR SINE MIR 47 226 -36 511 198 99 8 chr12 47786324 47786445 -96496044 + L1MC2 LINE L1 6200 6331 -13 357 294 42 21 chr12 47787239 47787382 -96495107 + MIR SINE MIR 117 262 0 510 239 25 14 chr12 47787698 47787838 -96494651 - MIR SINE MIR -59 203 61 316 327 88 26 chr12 47788115 47788387 -96494102 + MLT1K LTR MaLR 2 290 -298 2253 98 3 0 chr12 47788426 47788732 -96493757 + AluSg SINE Alu 1 307 -3 371 277 113 72 chr12 47789156 47789668 -96492821 - L1ME4a LINE L1 -241 5880 5348 38429 87 14 8 chr12 47789931 47796044 -96486445 - L1PA6 LINE L1 -7 6147 3 2042 117 32 0 chr12 47796053 47796334 -96486155 - AluSx SINE Alu -22 290 1 23 54 0 0 chr12 47796334 47796371 -96486118 + AT_rich Low_complexity Low_complexity 1 37 0 2021 131 10 0 chr12 47796782 47797080 -96485409 - AluSx SINE Alu -11 301 1 746 254 96 21 chr12 47798040 47798280 -96484209 - MIR SINE MIR 0 262 5 310 297 44 11 chr12 47798687 47798778 -96483711 + MIR3 SINE MIR 115 208 0 182 255 21 0 chr12 47799052 47799099 -96483390 + L2 LINE L2 3251 3298 -15 735 202 22 34 chr12 47799394 47799572 -96482917 + MER5B DNA MER1_type 1 176 -2 1961 118 69 39 chr12 47799845 47800209 -96482280 - THE1C LTR MaLR 0 375 1 290 289 127 86 chr12 47800798 47801217 -96481272 - L2 LINE L2 -13 3259 2824 243 326 98 43 chr12 47801386 47801707 -96480782 - L2 LINE L2 -807 2507 2169 423 219 150 50 chr12 47801707 47801830 -96480659 - MER5B DNA MER1_type -2 176 32 222 62 0 0 chr12 47801830 47801862 -96480627 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 423 219 150 50 chr12 47801862 47801898 -96480591 - MER5B DNA MER1_type -146 32 1 226 285 171 44 chr12 47802615 47802843 -96479646 + L2 LINE L2 3056 3312 -1 13656 126 45 7 chr12 47803005 47805316 -96477173 + Tigger1 DNA MER2_type 20 2418 0 268 300 22 0 chr12 47805872 47805962 -96476527 + MIR SINE MIR 64 155 -107 2064 120 25 0 chr12 47806944 47807228 -96475261 - AluSx SINE Alu -21 291 1 646 234 128 75 chr12 47809249 47809664 -96472825 + MLT1H LTR MaLR 111 547 -2 40637 35 24 1 chr12 47811054 47817073 -96465416 - L1PA3 LINE L1 0 6155 1 406 250 8 40 chr12 47818928 47819052 -96463437 + MIR SINE MIR 59 178 -84 1015 164 55 0 chr12 47819620 47819803 -96462686 + MER46A DNA MER2_type 44 236 0 22 35 0 0 chr12 47820244 47820273 -96462216 + AT_rich Low_complexity Low_complexity 1 29 0 636 271 75 76 chr12 47820275 47820638 -96461851 + L1M4 LINE L1 3918 4282 -1864 2299 99 0 0 chr12 47820638 47820946 -96461543 + AluSx SINE Alu 1 308 0 636 271 75 76 chr12 47820946 47821250 -96461239 + L1M4 LINE L1 4282 4585 -1561 315 288 93 26 chr12 47821316 47821813 -96460676 + L1M4 LINE L1 4789 5318 -828 4726 226 77 59 chr12 47821946 47823941 -96458548 + L1M4 LINE L1 16 1973 -4673 2307 122 30 25 chr12 47823941 47824303 -96458186 - THE1B LTR MaLR 0 364 1 4726 226 77 59 chr12 47824303 47824335 -96458154 + L1M4 LINE L1 1973 2003 -4643 2170 112 0 7 chr12 47824335 47824638 -96457851 - AluSg SINE Alu -9 301 1 1177 177 73 5 chr12 47824638 47824858 -96457631 + MER46A DNA MER2_type 1 235 -1 4726 226 77 59 chr12 47824858 47825444 -96457045 + L1M4 LINE L1 2002 2703 -3943 3938 236 76 23 chr12 47825427 47826911 -96455578 + L1M4 LINE L1 3639 5201 -1443 * 2316 174 8 0 chr12 47827029 47827501 -96454988 - L1 LINE L1 -1056 5806 5331 7703 206 26 6 chr12 47827501 47829446 -96453043 - L1PBa LINE L1 -2103 4759 2782 298 289 11 0 chr12 47829758 47829848 -96452641 - MER102a DNA MER1_type -19 311 221 27 0 0 0 chr12 47830134 47830161 -96452328 + AT_rich Low_complexity Low_complexity 1 27 0 301 309 27 27 chr12 47830888 47830998 -96451491 - L2 LINE L2 0 3313 3204 435 187 0 0 chr12 47831472 47831547 -96450942 + MER96 DNA MER1_type? 5 79 -96 246 271 51 0 chr12 47831688 47831747 -96450742 + L2 LINE L2 3251 3312 -1 267 31 0 0 chr12 47831798 47831830 -96450659 + (ATG)n Simple_repeat Simple_repeat 2 33 0 425 312 81 23 chr12 47831836 47832009 -96450480 - MIR SINE MIR -8 254 72 529 327 84 49 chr12 47833051 47833659 -96448830 - HERV16 LTR ERVL -4271 725 97 2023 169 77 23 chr12 47833673 47834100 -96448389 + MLT1D LTR MaLR 9 458 -47 2085 143 10 0 chr12 47834203 47834687 -96447802 + L1PB1 LINE L1 5590 6146 -5 324 314 51 7 chr12 47834711 47834848 -96447641 + L1ME LINE L1 645 787 -5283 658 96 61 0 chr12 47834889 47835004 -96447485 + L1MA5 LINE L1 6173 6294 -6 7363 203 46 26 chr12 47835184 47837062 -96445427 + L1 LINE L1 3254 5178 -968 2470 51 0 3 chr12 47837062 47837354 -96445135 - AluY SINE Alu -10 301 11 7363 203 46 26 chr12 47837354 47837506 -96444983 + L1 LINE L1 5178 5325 -821 1727 169 0 0 chr12 47837646 47837919 -96444570 - AluJo SINE Alu -39 273 1 2971 227 50 21 chr12 47837965 47839301 -96443188 - L1ME1 LINE L1 -10 6156 4785 34 24 0 0 chr12 47839527 47839568 -96442921 + AT_rich Low_complexity Low_complexity 1 41 0 261 378 0 63 chr12 47839591 47839734 -96442755 - L2 LINE L2 -194 3078 2945 209 345 202 13 chr12 47839776 47840014 -96442475 - L2 LINE L2 -430 2884 2602 1318 182 107 55 chr12 47840371 47840718 -96441771 + MLT1A1 LTR MaLR 1 365 0 457 230 143 0 chr12 47840949 47841075 -96441414 - MER5A DNA MER1_type 0 189 46 259 146 36 0 chr12 47841233 47841288 -96441201 - AluS SINE Alu -240 60 4 22 0 0 0 chr12 47841292 47841314 -96441175 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr12 47841357 47841380 -96441109 + (TTTTTA)n Simple_repeat Simple_repeat 4 26 0 2067 100 3 55 chr12 47841465 47841776 -96440713 - AluSc SINE Alu -14 295 1 4652 162 55 2 chr12 47841876 47843021 -96439468 - L1PB1 LINE L1 -1 6150 4950 3179 196 159 56 chr12 47843360 47843672 -96438817 - L1M4c LINE L1 -4070 2314 2035 1409 171 84 7 chr12 47843672 47843803 -96438686 - AluJb SINE Alu -14 298 178 414 0 0 0 chr12 47843803 47843849 -96438640 + (ATG)n Simple_repeat Simple_repeat 2 47 0 1409 171 84 7 chr12 47843849 47843992 -96438497 - AluJb SINE Alu -134 178 3 3179 196 159 56 chr12 47843992 47844477 -96438012 - L1M4c LINE L1 -4349 2035 1601 1669 127 94 0 chr12 47844477 47844502 -96437987 - L1MA2 LINE L1 -4 6300 6279 387 0 0 0 chr12 47844502 47844545 -96437944 + (TA)n Simple_repeat Simple_repeat 2 44 0 1669 127 94 0 chr12 47844545 47844818 -96437671 - L1MA2 LINE L1 -25 6279 5974 3179 196 159 56 chr12 47844818 47845455 -96437034 - L1M4c LINE L1 -4783 1601 777 2332 91 0 3 chr12 47846124 47846422 -96436067 + AluSx SINE Alu 1 297 -15 382 345 58 11 chr12 47847204 47847378 -96435111 + L2 LINE L2 2811 2992 -321 1527 234 14 155 chr12 47847526 47847591 -96434898 - MLT2B3 LTR ERVL -2 518 445 387 0 0 0 chr12 47847591 47847634 -96434855 + (CA)n Simple_repeat Simple_repeat 2 44 0 1527 234 14 155 chr12 47847634 47848085 -96434404 - MLT2B3 LTR ERVL -75 445 75 355 130 0 14 chr12 47848207 47848276 -96434213 - MLT2B3 LTR ERVL -483 71 4 6299 146 26 41 chr12 47848284 47848798 -96433691 + L1PBa LINE L1 82 602 -6261 2151 124 0 13 chr12 47848798 47849112 -96433377 - AluSx SINE Alu -2 310 1 6299 146 26 41 chr12 47849112 47850641 -96431848 + L1PBa LINE L1 602 2321 -4542 4035 35 0 0 chr12 47850641 47851092 -96431397 + L1PA4 LINE L1 5697 6147 -8 6299 146 26 41 chr12 47851092 47851263 -96431226 + L1PBa LINE L1 2321 2493 -4370 343 115 207 0 chr12 47851363 47851450 -96431039 + MLT1D LTR MaLR 400 504 -1 604 269 38 11 chr12 47851542 47851728 -96430761 - LTR16B LTR ERVL 0 464 274 424 283 96 6 chr12 47852255 47852421 -96430068 - L1MC/D LINE L1 -651 5591 5411 1815 180 81 47 chr12 47852441 47852824 -96429665 + MSTD LTR MaLR 1 396 0 397 240 118 47 chr12 47853157 47853411 -96429078 - L1ME4a LINE L1 -2 6119 5848 352 218 0 0 chr12 47853412 47853490 -96428999 - L1ME4a LINE L1 -335 5786 5709 32 57 0 0 chr12 47854105 47854158 -96428331 + AT_rich Low_complexity Low_complexity 1 53 0 517 304 33 17 chr12 47854322 47854503 -96427986 - MIR3 SINE MIR -9 199 16 237 207 35 0 chr12 47855394 47855452 -96427037 + MIR SINE MIR 195 254 -8 311 294 32 8 chr12 47855890 47856016 -96426473 + LTR16C LTR ERVL 360 488 -3 372 217 19 28 chr12 47856729 47856835 -96425654 - MIR SINE MIR -51 211 107 2107 121 0 3 chr12 47857037 47857327 -96425162 - AluSx SINE Alu -23 289 1 650 0 0 0 chr12 47857531 47857601 -96424888 - U6 snRNA snRNA -37 70 1 790 252 240 8 chr12 47857997 47858074 -96424415 - LTR50 LTR ERVL -10 785 727 1692 191 0 10 chr12 47858074 47858373 -96424116 + AluJo SINE Alu 6 301 -11 790 252 240 8 chr12 47858373 47858863 -96423626 - LTR50 LTR ERVL -68 727 1 447 231 7 84 chr12 47859381 47859485 -96423004 - L2 LINE L2 0 3313 3221 625 288 66 76 chr12 47859485 47859999 -96422490 - MLT1J LTR MaLR -2 509 1 447 231 7 84 chr12 47859999 47860037 -96422452 - L2 LINE L2 -92 3221 3182 406 339 110 24 chr12 47861248 47861631 -96420858 + MLT1J LTR MaLR 4 419 -92 848 211 47 16 chr12 47861656 47861912 -96420577 + AluY SINE Alu 1 264 -47 337 297 51 8 chr12 47862569 47862687 -96419802 - MIR SINE MIR 0 262 140 828 251 49 31 chr12 47863693 47863916 -96418573 - MIR SINE MIR -34 228 2 297 323 10 0 chr12 47864885 47864984 -96417505 + G-rich Low_complexity Low_complexity 2 101 0 1346 247 10 10 chr12 47865115 47865427 -96417062 - MSTD-int LTR MaLR -998 737 426 283 67 137 7 chr12 47865499 47865551 -96416938 + MLT2D LTR ERVL 1 53 -347 1385 230 13 22 chr12 47865551 47865864 -96416625 - MSTD-int LTR MaLR -1327 408 99 2145 143 29 35 chr12 47865864 47866241 -96416248 - THE1C LTR MaLR 0 375 1 8453 116 13 45 chr12 47866241 47867579 -96414910 - THE1C-int LTR MaLR 0 1580 286 3267 147 50 28 chr12 47867767 47868461 -96414028 + MER21A LTR ERV1 136 925 -1 22 35 0 0 chr12 47868483 47868512 -96413977 + AT_rich Low_complexity Low_complexity 1 29 0 1957 125 35 7 chr12 47868608 47868897 -96413592 + AluSx SINE Alu 1 297 -15 442 323 53 32 chr12 47868901 47869492 -96412997 + L1MEd LINE L1 939 1630 -860 1230 212 174 18 chr12 47869645 47869984 -96412505 - MSTD LTR MaLR -4 392 1 1122 146 107 5 chr12 47869984 47870189 -96412300 - MSTD-int LTR MaLR 0 1735 1510 1100 66 0 0 chr12 47870189 47870325 -96412164 + L1P2 LINE L1 5626 5761 -394 336 83 0 0 chr12 47870425 47870473 -96412016 + (CA)n Simple_repeat Simple_repeat 2 49 0 1833 284 96 31 chr12 47870487 47870979 -96411510 - L1MC4 LINE L1 -149 7893 7434 198 0 0 0 chr12 47870979 47871001 -96411488 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2155 113 0 0 chr12 47871003 47871285 -96411204 - AluSx SINE Alu -30 282 1 1833 284 96 31 chr12 47871285 47871654 -96410835 - L1MC4 LINE L1 -608 7434 6973 408 299 84 0 chr12 47871701 47871855 -96410634 + MIR SINE MIR 3 169 -93 212 242 152 15 chr12 47871869 47871935 -96410554 + L2 LINE L2 3229 3303 -10 22 0 0 0 chr12 47872125 47872147 -96410342 + AT_rich Low_complexity Low_complexity 1 22 0 959 202 97 17 chr12 47872155 47872393 -96410096 - MIR SINE MIR -3 259 3 316 264 34 62 chr12 47873065 47873320 -96409169 - L2 LINE L2 -675 2639 2336 925 256 20 20 chr12 47873334 47873584 -96408905 + MIR SINE MIR 13 262 0 532 333 28 19 chr12 47873750 47873966 -96408523 + MLT1I LTR MaLR 192 409 0 508 250 40 14 chr12 47876307 47876455 -96406034 - MLT2F LTR ERVL 0 663 512 239 378 42 14 chr12 47877192 47877335 -96405154 - L2 LINE L2 -1 3271 3125 461 246 8 0 chr12 47878471 47878605 -96403884 + (TCCA)n Simple_repeat Simple_repeat 4 138 0 268 372 47 8 chr12 47879983 47880112 -96402377 + L2 LINE L2 3139 3272 0 400 267 169 52 chr12 47880425 47880773 -96401716 + MLT1J LTR MaLR 98 486 -25 300 147 0 0 chr12 47881011 47881066 -96401423 + MLT2B1 LTR ERVL 341 518 -2 285 233 100 50 chr12 47881156 47881276 -96401213 + Charlie7 DNA MER1_type 2486 2611 -1 23 54 0 0 chr12 47881512 47881549 -96400940 + AT_rich Low_complexity Low_complexity 1 37 0 234 205 152 18 chr12 47881686 47881798 -96400691 + Charlie7 DNA MER1_type 2428 2554 -58 262 133 200 76 chr12 47882339 47882444 -96400045 - L1MC4 LINE L1 0 8042 7925 231 125 0 0 chr12 47882477 47882517 -96399972 + (C)n Simple_repeat Simple_repeat 1 40 0 829 150 0 0 chr12 47882673 47882786 -96399703 - FLAM_C SINE Alu -19 114 2 2166 255 47 34 chr12 47882786 47883717 -96398772 + L1M4 LINE L1 3535 4508 -1638 230 267 93 0 chr12 47884255 47884330 -96398159 - MLT1J LTR MaLR -6 505 424 293 305 43 33 chr12 47884452 47884651 -96397838 - MLT1L LTR MaLR -216 295 97 204 265 0 0 chr12 47885210 47885259 -96397230 - L2 LINE L2 -11 3261 3213 996 216 119 94 chr12 47886173 47886451 -96396038 - LTR36 LTR ERV1 -2 609 339 1925 154 0 3 chr12 47886451 47886756 -96395733 + AluSx SINE Alu 3 306 -6 996 216 119 94 chr12 47886756 47887071 -96395418 - LTR36 LTR ERV1 -272 339 1 643 305 81 4 chr12 47887271 47887507 -96394982 - MIR SINE MIR -2 260 7 435 19 0 0 chr12 47889390 47889442 -96393047 + (CA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr12 47890042 47890066 -96392423 + AT_rich Low_complexity Low_complexity 1 24 0 926 208 0 13 chr12 47891353 47891507 -96390982 + FRAM SINE Alu 4 155 -11 628 226 60 18 chr12 47891513 47891681 -96390808 + MER104 DNA Tc2 6 180 0 1060 211 10 14 chr12 47891825 47892033 -96390456 - MER3 DNA MER1_type 0 209 3 461 297 140 22 chr12 47892140 47892362 -96390127 + MIR SINE MIR 14 261 -1 275 390 54 18 chr12 47892489 47892712 -96389777 - L2 LINE L2 -206 3066 2836 3094 240 116 28 chr12 47892839 47894255 -96388234 + L2 LINE L2 1784 3313 0 261 321 48 0 chr12 47894308 47894392 -96388097 - L2 LINE L2 0 3272 3185 216 230 246 32 chr12 47894374 47894500 -96387989 - L2 LINE L2 -858 2456 2304 * 188 306 51 51 chr12 47895588 47895686 -96386803 + L2 LINE L2 3168 3265 -7 283 316 128 23 chr12 47895873 47896006 -96386483 - L2 LINE L2 -5 3267 3121 440 316 151 0 chr12 47896066 47896218 -96386271 - MER5A DNA MER1_type -6 183 9 226 371 29 0 chr12 47896217 47896322 -96386167 - MIR SINE MIR -63 199 92 * 7483 135 45 3 chr12 47896325 47897474 -96385015 + ERVL-B2 LTR ERVL 3422 4619 -1145 1547 160 67 32 chr12 47897586 47897987 -96384502 - SVA Other Other -540 846 432 1698 179 47 27 chr12 47898033 47898896 -96383593 - SVA Other Other -518 868 432 7532 124 20 14 chr12 47898922 47900064 -96382425 + ERVL-B2 LTR ERVL 4609 5757 -7 3329 150 6 29 chr12 47900064 47900591 -96381898 + MLT2B2 LTR ERVL 1 515 0 833 179 28 88 chr12 47900750 47901001 -96381488 - MER106A DNA MER1_type 0 236 1 660 306 141 8 chr12 47901044 47901292 -96381197 - L3 LINE CR1 -1 1576 1296 193 305 95 19 chr12 47901428 47901533 -96380956 - L3 LINE CR1 -561 1016 904 245 317 109 10 chr12 47901664 47901976 -96380513 + HAL1 LINE L1 2165 2507 0 204 247 86 49 chr12 47902034 47902115 -96380374 + MIR3 SINE MIR 77 160 -48 2055 156 0 0 chr12 47902149 47902457 -96380032 + AluJb SINE Alu 1 308 -4 264 291 103 17 chr12 47902738 47902855 -96379634 - MER112 DNA MER1_type -106 154 28 257 317 120 21 chr12 47904487 47904629 -96377860 + MIR SINE MIR 100 255 -7 396 211 19 10 chr12 47905673 47905777 -96376712 + L1MC1 LINE L1 6224 6328 -5 1185 189 39 76 chr12 47906171 47906607 -96375882 - MLT2B1 LTR ERVL -5 515 2 510 320 52 26 chr12 47907018 47907212 -96375277 + MIR SINE MIR 15 213 -49 2074 191 10 50 chr12 47907304 47907823 -96374666 - MLT1D LTR MaLR 0 505 8 26 74 0 0 chr12 47907986 47908040 -96374449 + AT_rich Low_complexity Low_complexity 1 54 0 710 254 104 33 chr12 47908207 47908659 -96373830 - L1ME4a LINE L1 -288 5833 5350 847 279 43 62 chr12 47909056 47909472 -96373017 - HAL1 LINE L1 -2049 458 51 2185 92 0 64 chr12 47910071 47910398 -96372091 + AluSg SINE Alu 1 306 -4 1574 191 72 0 chr12 47910787 47911064 -96371425 - AluJb SINE Alu -15 297 1 1853 167 4 0 chr12 47911361 47911686 -96370803 + AluJo SINE Alu 2 327 0 192 152 0 0 chr12 47912870 47912903 -96369586 + (CA)n Simple_repeat Simple_repeat 1 33 0 3380 25 0 0 chr12 47912962 47913358 -96369131 - L1PA4 LINE L1 0 6155 5760 200 150 25 0 chr12 47913449 47913489 -96369000 - L2 LINE L2 -4 3309 3269 218 338 103 41 chr12 47913751 47913896 -96368593 - L3 LINE CR1 -121 1456 1303 1652 306 102 52 chr12 47914032 47914522 -96367967 - L3 LINE CR1 -353 1224 760 1705 209 10 0 chr12 47914522 47914829 -96367660 - AluJb SINE Alu -2 310 1 740 203 0 0 chr12 47914833 47914966 -96367523 - FLAM_A SINE Alu 0 133 1 1652 306 102 52 chr12 47914966 47915450 -96367039 - L3 LINE CR1 -819 758 196 387 105 0 0 chr12 47915506 47915563 -96366926 + (TCC)n Simple_repeat Simple_repeat 3 59 0 1983 154 0 28 chr12 47915566 47915885 -96366604 - AluSx SINE Alu -2 310 1 219 257 199 44 chr12 47916110 47916246 -96366243 - MIR SINE MIR -98 164 8 24 0 0 0 chr12 47916318 47916342 -96366147 + AT_rich Low_complexity Low_complexity 1 24 0 1941 107 14 45 chr12 47916345 47916636 -96365853 + AluSx SINE Alu 1 282 -30 2168 169 31 0 chr12 47916734 47917125 -96365364 + MER57A LTR ERV1 1 403 0 471 251 79 51 chr12 47917640 47917980 -96364509 - L1MEd LINE L1 -4885 1487 1124 297 280 21 0 chr12 47918121 47918214 -96364275 + MIR SINE MIR 147 241 -21 201 74 0 0 chr12 47918515 47918542 -96363947 + (A)n Simple_repeat Simple_repeat 1 27 0 701 176 8 23 chr12 47918552 47918683 -96363806 + FLAM_C SINE Alu 3 131 -12 380 274 123 54 chr12 47918745 47918949 -96363540 + L1M4 LINE L1 3969 4186 -1960 1692 176 3 13 chr12 47919237 47919543 -96362946 + AluJb SINE Alu 1 303 -9 292 309 183 57 chr12 47919657 47920094 -96362395 - L2 LINE L2 -18 3295 2804 241 282 24 0 chr12 47920102 47920187 -96362302 - MLT1L LTR MaLR -6 609 523 23 0 0 0 chr12 47920194 47920217 -96362272 + AT_rich Low_complexity Low_complexity 1 23 0 2296 105 7 10 chr12 47920422 47920726 -96361763 - AluSx SINE Alu -9 303 1 317 228 76 0 chr12 47920850 47920929 -96361560 - MLT1L LTR MaLR -410 205 121 855 153 9 96 chr12 47920963 47921192 -96361297 + Charlie4 DNA MER1_type 5 213 -1748 2249 114 0 0 chr12 47921608 47921905 -96360584 + AluSx SINE Alu 1 297 -15 528 309 105 0 chr12 47921937 47922147 -96360342 + MIR SINE MIR 31 262 0 2353 92 3 0 chr12 47922659 47922963 -96359526 + AluSx SINE Alu 1 305 -7 591 71 0 0 chr12 47923296 47923381 -96359108 + (CTGGGG)n Simple_repeat Simple_repeat 1 85 0 272 225 42 14 chr12 47924091 47924162 -96358327 - MER96 DNA MER1_type? -13 162 90 285 133 0 0 chr12 47924242 47924287 -96358202 - MIR SINE MIR -26 236 192 316 328 188 16 chr12 47925784 47925912 -96356577 + L2 LINE L2 3123 3272 0 294 73 0 0 chr12 47926091 47926132 -96356357 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 187 200 0 0 chr12 47926133 47926168 -96356321 - L2 LINE L2 -14 3299 3265 195 42 0 0 chr12 47926832 47926856 -96355633 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 261 119 0 0 chr12 47928618 47928660 -96353829 + (TTG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr12 47929773 47929794 -96352695 + AT_rich Low_complexity Low_complexity 1 21 0 2069 134 7 0 chr12 47929941 47930248 -96352241 - AluSx SINE Alu -3 309 1 252 271 14 14 chr12 47930337 47930407 -96352082 - MIR3 SINE MIR -6 202 133 23 0 0 0 chr12 47930669 47930692 -96351797 + AT_rich Low_complexity Low_complexity 1 23 0 2319 53 3 10 chr12 47930957 47931261 -96351228 - AluY SINE Alu -9 302 1 648 206 53 107 chr12 47931343 47931605 -96350884 - MER112 DNA MER1_type -12 248 1 518 240 59 54 chr12 47932383 47932587 -96349902 - MIR SINE MIR -25 237 33 2113 82 33 56 chr12 47932868 47933173 -96349316 + AluSx SINE Alu 1 298 -14 310 117 5 208 chr12 47933266 47933375 -96349114 + MER20 DNA MER1_type 34 125 -94 3124 182 76 4 chr12 47933874 47934599 -96347890 + L1MB7 LINE L1 5401 6177 -7 398 291 60 22 chr12 47934603 47934737 -96347752 - L2 LINE L2 -12 3301 3163 1720 136 7 51 chr12 47935690 47935984 -96346505 - AluJo SINE Alu -21 291 11 314 254 77 39 chr12 47936892 47937022 -96345467 - MIR SINE MIR -56 206 72 423 0 0 0 chr12 47937112 47937159 -96345330 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2074 121 0 0 chr12 47937161 47937442 -96345047 - AluSx SINE Alu -31 281 1 1576 146 0 108 chr12 47937711 47938046 -96344443 + AluJb SINE Alu 1 299 -13 2747 13 0 0 chr12 47938052 47938354 -96344135 - AluYa5 SINE Alu -9 302 1 356 294 92 25 chr12 47938464 47938627 -96343862 - MIR SINE MIR -36 226 53 187 392 121 9 chr12 47940580 47940812 -96341677 - L2 LINE L2 -50 3222 2965 1761 175 24 0 chr12 47940926 47941037 -96341452 + AluJb SINE Alu 1 108 -204 185 0 0 39 chr12 47941037 47941063 -96341426 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1761 175 24 0 chr12 47941063 47941248 -96341241 + AluJb SINE Alu 108 304 -8 222 214 68 0 chr12 47941453 47941556 -96340933 + (TA)n Simple_repeat Simple_repeat 1 110 0 301 179 60 0 chr12 47941568 47941652 -96340837 + (TATAA)n Simple_repeat Simple_repeat 2 90 0 442 312 0 16 chr12 47941673 47941798 -96340691 - L2 LINE L2 -20 3293 3171 2012 98 0 0 chr12 47941812 47942067 -96340422 + AluSq SINE Alu 1 255 -58 22 35 0 0 chr12 47942076 47942105 -96340384 + AT_rich Low_complexity Low_complexity 1 29 0 213 39 0 0 chr12 47942156 47942182 -96340307 + (TG)n Simple_repeat Simple_repeat 2 27 0 841 239 98 17 chr12 47942368 47942602 -96339887 + MIR SINE MIR 10 262 0 939 181 0 6 chr12 47942697 47942857 -96339632 + AluJb SINE Alu 136 294 -18 195 242 11 22 chr12 47942926 47943017 -96339472 + GA-rich Low_complexity Low_complexity 3 92 0 280 309 0 0 chr12 47943401 47943469 -96339020 - L2 LINE L2 -205 3067 3000 1645 197 17 0 chr12 47944129 47944418 -96338071 + AluJb SINE Alu 1 294 -18 888 267 86 75 chr12 47944525 47944978 -96337511 - L2 LINE L2 -20 3293 2836 664 230 85 94 chr12 47944987 47945400 -96337089 - Charlie7 DNA MER1_type -2148 464 56 527 250 0 0 chr12 47945881 47945989 -96336500 - MER81 DNA DNA -6 108 1 357 43 0 0 chr12 47946254 47946301 -96336188 + (CA)n Simple_repeat Simple_repeat 2 48 0 1036 270 94 44 chr12 47947319 47948034 -96334455 - L2 LINE L2 -1 3312 2440 2267 141 63 24 chr12 47948034 47948446 -96334043 + MSTA LTR MaLR 1 428 0 1036 270 94 44 chr12 47948446 47948578 -96333911 - L2 LINE L2 -873 2440 2316 454 241 57 80 chr12 47948625 47948961 -96333528 - L1MC5 LINE L1 -30 7931 7604 4363 183 53 12 chr12 47948970 47949590 -96332899 + L1MB3 LINE L1 4812 5406 -777 222 37 0 0 chr12 47949590 47949617 -96332872 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4363 183 53 12 chr12 47949617 47950311 -96332178 + L1MB3 LINE L1 5406 6182 -1 595 257 83 38 chr12 47950312 47950756 -96331733 - L1MC5 LINE L1 -347 7614 7244 * 1412 265 87 63 chr12 47950753 47951040 -96331449 - L1MC4 LINE L1 -739 7222 6943 2359 105 3 0 chr12 47951040 47951346 -96331143 - AluSq SINE Alu -6 307 1 1412 265 87 63 chr12 47951346 47951443 -96331046 - L1MC4 LINE L1 -1018 6943 6850 1753 184 33 0 chr12 47951443 47951742 -96330747 - AluJo SINE Alu -3 309 1 1412 265 87 63 chr12 47951742 47952056 -96330433 - L1MC4 LINE L1 -1111 6850 6545 2342 125 31 19 chr12 47952056 47952416 -96330073 - THE1B LTR MaLR 0 364 1 2136 136 0 0 chr12 47952423 47952725 -96329764 - AluSx SINE Alu -10 302 1 1412 265 87 63 chr12 47952725 47952737 -96329752 - L1MC4 LINE L1 -1421 6540 6530 197 0 71 0 chr12 47952737 47952765 -96329724 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1741 187 7 0 chr12 47952772 47953056 -96329433 - AluJb SINE Alu -26 286 1 1412 265 87 63 chr12 47953056 47954421 -96328068 - L1MC4 LINE L1 -1436 6525 5194 1870 158 0 26 chr12 47954421 47954731 -96327758 - AluJo SINE Alu -9 303 2 1412 265 87 63 chr12 47954731 47955312 -96327177 - L1MC4 LINE L1 -2767 5194 4628 2505 49 0 13 chr12 47955312 47955618 -96326871 - AluY SINE Alu -9 302 1 1412 265 87 63 chr12 47955618 47955834 -96326655 - L1MC4 LINE L1 -3333 4628 4419 677 122 103 0 chr12 47955834 47955941 -96326548 + FLAM_C SINE Alu 1 118 -15 1412 265 87 63 chr12 47955941 47956240 -96326249 - L1MC4 LINE L1 -3542 4419 4018 502 252 145 25 chr12 47956352 47956511 -96325978 - MER5A DNA MER1_type -3 186 9 344 227 80 0 chr12 47957136 47957211 -96325278 - L2 LINE L2 -34 3279 3199 228 286 95 38 chr12 47957249 47957354 -96325135 - MER5B DNA MER1_type -20 158 48 302 268 162 33 chr12 47959742 47959947 -96322542 + MIR SINE MIR 13 256 -6 239 217 105 0 chr12 47959976 47960067 -96322422 + MIR SINE MIR 104 211 -51 261 0 0 0 chr12 47960898 47960927 -96321562 + (A)n Simple_repeat Simple_repeat 1 29 0 32 57 0 0 chr12 47961031 47961084 -96321405 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr12 47961104 47961127 -96321362 + AT_rich Low_complexity Low_complexity 1 23 0 372 250 50 0 chr12 47961133 47961233 -96321256 - MER106B DNA MER1_type -907 152 48 427 344 173 2 chr12 47961732 47962160 -96320329 + L2 LINE L2 2201 2701 -613 1319 142 164 51 chr12 47963713 47963987 -96318502 - AluJo SINE Alu -7 305 1 28 0 0 0 chr12 47964403 47964431 -96318058 + AT_rich Low_complexity Low_complexity 1 28 0 764 183 8 0 chr12 47964437 47964563 -96317926 - FLAM_A SINE Alu -6 127 1 1173 91 246 5 chr12 47964695 47964882 -96317607 + AluSg1 SINE Alu 1 232 -77 270 217 0 0 chr12 47964887 47964956 -96317533 + GA-rich Low_complexity Low_complexity 3 71 0 2454 84 0 6 chr12 47966791 47967102 -96315387 + AluSc SINE Alu 1 309 0 234 0 0 0 chr12 47967226 47967252 -96315237 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 56 0 0 chr12 47967621 47967657 -96314832 + AT_rich Low_complexity Low_complexity 1 36 0 506 283 75 57 chr12 47968398 47968603 -96313886 + HAL1 LINE L1 859 1072 -1435 1812 185 7 3 chr12 47968603 47968900 -96313589 + AluJo SINE Alu 6 303 -9 506 283 75 57 chr12 47968900 47968959 -96313530 + HAL1 LINE L1 1072 1128 -1379 977 168 6 35 chr12 47968962 47969135 -96313354 + FRAM SINE Alu 1 163 -13 491 238 104 18 chr12 47969185 47969349 -96313140 + FRAM SINE Alu 1 176 0 406 278 119 63 chr12 47969425 47969574 -96312915 + HAL1 LINE L1 1290 1429 -1078 1800 149 23 26 chr12 47969574 47969882 -96312607 + AluJo SINE Alu 5 311 -1 406 278 119 63 chr12 47969882 47970067 -96312422 + HAL1 LINE L1 1429 1643 -864 972 267 11 30 chr12 47970073 47970339 -96312150 - MIR SINE MIR 0 262 2 314 305 0 25 chr12 47970358 47970476 -96312013 + HAL1 LINE L1 1655 1769 -738 2371 137 31 49 chr12 47971119 47971441 -96311048 + MER65A LTR ERV1 1 314 -131 2183 96 30 3 chr12 47971441 47971743 -96310746 + AluSg SINE Alu 1 310 0 2371 137 31 49 chr12 47971743 47971873 -96310616 + MER65A LTR ERV1 314 445 0 272 344 193 12 chr12 47972176 47972446 -96310043 - L2 LINE L2 -229 3043 2823 848 274 71 69 chr12 47972446 47972909 -96309580 + LTR16B LTR ERVL 1 464 0 272 344 193 12 chr12 47972909 47973195 -96309294 - L2 LINE L2 -449 2823 2392 1194 184 26 13 chr12 47973382 47973610 -96308879 + AluJb SINE Alu 74 304 -8 2103 133 3 3 chr12 47973820 47974120 -96308369 + AluSx SINE Alu 1 300 -12 189 0 0 0 chr12 47974122 47974143 -96308346 + (GA)n Simple_repeat Simple_repeat 2 22 0 1018 197 26 11 chr12 47974143 47974374 -96308115 + MLT1D LTR MaLR 237 501 -4 215 217 12 72 chr12 47974853 47974936 -96307553 + (TA)n Simple_repeat Simple_repeat 2 79 0 303 211 79 0 chr12 47974937 47975051 -96307438 + L1ME4a LINE L1 5994 6116 -5 23 92 0 0 chr12 47975054 47975119 -96307370 + AT_rich Low_complexity Low_complexity 1 65 0 365 327 86 32 chr12 47975901 47976121 -96306368 + L2 LINE L2 3082 3313 0 364 353 134 28 chr12 47976415 47977266 -96305223 - L2 LINE L2 -167 3105 2127 21 71 0 0 chr12 47977434 47977476 -96305013 + AT_rich Low_complexity Low_complexity 1 42 0 3372 124 12 0 chr12 47978473 47978979 -96303510 - MER41E LTR ERV1 0 512 1 279 262 199 21 chr12 47979661 47979852 -96302637 + L2 LINE L2 2992 3216 -97 468 261 70 35 chr12 47980802 47981001 -96301488 + MIR SINE MIR 57 262 0 665 203 271 21 chr12 47981622 47981814 -96300675 - MIR SINE MIR -21 241 2 1350 226 191 31 chr12 47981854 47982363 -96300126 - MLT1E LTR MaLR 0 593 4 479 191 0 0 chr12 47982398 47982487 -96300002 - MIR SINE MIR -6 256 168 1693 152 62 17 chr12 47982787 47983076 -96299413 - AluJb SINE Alu -10 302 1 232 285 120 50 chr12 47983634 47983992 -96298497 + L1M4 LINE L1 3715 4097 -2049 226 243 19 29 chr12 47984113 47984216 -96298273 + (TA)n Simple_repeat Simple_repeat 1 102 0 2159 119 0 0 chr12 47984393 47984679 -96297810 - AluSx SINE Alu -23 289 4 2112 125 7 0 chr12 47984776 47985065 -96297424 + AluSg SINE Alu 1 291 -19 1982 171 3 0 chr12 47985123 47985421 -96297068 - AluJo SINE Alu -13 299 1 259 319 43 11 chr12 47986205 47986299 -96296190 - L2 LINE L2 -2 3270 3174 1015 322 136 37 chr12 47986467 47987585 -96294904 - L2 LINE L2 -1 3271 2265 1474 188 8 160 chr12 47987585 47987648 -96294841 - MLT1D LTR MaLR 0 505 434 1657 159 25 53 chr12 47987648 47987968 -96294521 + AluJb SINE Alu 1 311 -1 1474 188 8 160 chr12 47987968 47987990 -96294499 - MLT1D LTR MaLR -71 434 410 1853 168 10 10 chr12 47987990 47988287 -96294202 + AluJo SINE Alu 2 298 -14 1474 188 8 160 chr12 47988287 47988795 -96293694 - MLT1D LTR MaLR -95 410 1 1015 322 136 37 chr12 47988795 47988824 -96293665 - L2 LINE L2 -1007 2265 2005 613 245 29 0 chr12 47988859 47988998 -96293491 + MIR SINE MIR 85 227 -35 237 339 115 16 chr12 47989028 47989220 -96293269 - L2 LINE L2 -1354 1960 1750 285 222 78 0 chr12 47989819 47989909 -96292580 - L1MC5 LINE L1 -65 7896 7800 2261 92 45 36 chr12 47989948 47990305 -96292184 + THE1B LTR MaLR 5 364 0 189 0 0 0 chr12 47990326 47990347 -96292142 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1822 163 0 3 chr12 47990354 47990642 -96291847 + AluJb SINE Alu 1 287 -25 47 70 0 9 chr12 47990642 47990682 -96291807 + AT_rich Low_complexity Low_complexity 1 40 -73 1912 134 14 14 chr12 47990682 47990972 -96291517 + AluJb SINE Alu 1 290 -22 47 70 0 9 chr12 47990972 47991045 -96291444 + AT_rich Low_complexity Low_complexity 40 113 0 28 29 0 0 chr12 47992028 47992063 -96290426 + AT_rich Low_complexity Low_complexity 1 35 0 409 205 24 0 chr12 47992131 47992214 -96290275 + MLT1J LTR MaLR 104 188 -323 1045 197 3 88 chr12 47992251 47992375 -96290114 + L1MB3 LINE L1 4898 5031 -1115 2853 116 38 7 chr12 47992375 47992822 -96289667 - MER65C LTR ERV1 0 461 1 2443 94 0 0 chr12 47992831 47993139 -96289350 - AluY SINE Alu -3 308 1 1045 197 3 88 chr12 47993139 47993264 -96289225 + L1MB3 LINE L1 5039 5118 -1028 1600 134 123 15 chr12 47993264 47993525 -96288964 - AluSx SINE Alu -23 289 1 1045 197 3 88 chr12 47993525 47993640 -96288849 + L1MB3 LINE L1 5118 5241 -905 1631 173 32 29 chr12 47993640 47993887 -96288602 - MER7A DNA MER2_type -2692 346 98 4065 140 120 7 chr12 47993887 47994629 -96287860 + LTR1B LTR ERV1 1 826 0 1631 173 32 29 chr12 47994629 47994727 -96287762 - MER7A DNA MER2_type -2940 98 2 4832 146 20 34 chr12 47994742 47995161 -96287328 + L1MB3 LINE L1 5254 5677 -506 1632 171 58 0 chr12 47995161 47995435 -96287054 + AluJb SINE Alu 2 291 -21 4832 146 20 34 chr12 47995435 47995948 -96286541 + L1MB3 LINE L1 5677 6173 -10 372 213 0 0 chr12 47995990 47996065 -96286424 + MLT1J LTR MaLR 228 302 -209 203 231 51 0 chr12 47996069 47996108 -96286381 + MER91 DNA MER1_type 24 64 -76 409 168 53 11 chr12 47996118 47996213 -96286276 + MLT1J LTR MaLR 413 511 0 359 0 43 0 chr12 47996219 47996265 -96286224 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 215 277 0 0 chr12 47996658 47996723 -96285766 - MIR SINE MIR -34 228 164 747 290 14 18 chr12 47997300 47997521 -96284968 + LTR16C LTR ERVL 188 407 -84 3635 191 14 4 chr12 47997526 47998229 -96284260 + MER21-int LTR ERV1 14 723 -3468 1563 257 71 42 chr12 47998287 47998948 -96283541 - MSTC-int LTR MaLR -667 984 305 1981 146 34 3 chr12 47998948 47999148 -96283341 - MSTC LTR MaLR -89 339 124 2026 164 49 8 chr12 47999148 47999533 -96282956 + MER57A LTR ERV1 1 401 -2 1981 146 34 3 chr12 47999533 47999655 -96282834 - MSTC LTR MaLR -304 124 7 3501 227 38 17 chr12 47999665 48000525 -96281964 + MER21-int LTR ERV1 760 1637 -2554 2988 188 26 3 chr12 48000605 48001174 -96281315 + MER21-int LTR ERV1 1638 2219 -1972 1174 131 55 5 chr12 48001181 48001380 -96281109 + MER2 DNA MER2_type 2 210 -135 29 0 0 0 chr12 48001425 48001454 -96281035 + AT_rich Low_complexity Low_complexity 1 29 0 692 142 58 8 chr12 48001454 48001574 -96280915 - FLAM_C SINE Alu -17 126 1 4187 187 39 13 chr12 48001639 48002501 -96279988 + MER21-int LTR ERV1 2241 3104 -1087 213 308 67 39 chr12 48002979 48003083 -96279406 - L2 LINE L2 0 3272 3166 863 132 0 16 chr12 48003656 48003785 -96278704 + FLAM_C SINE Alu 4 130 -3 1975 154 0 3 chr12 48003789 48004108 -96278381 + AluSx SINE Alu 1 318 0 361 214 11 0 chr12 48004496 48004585 -96277904 + L1MEc LINE L1 1902 1991 -4405 966 231 24 47 chr12 48005026 48005176 -96277313 + MIR SINE MIR 13 156 -106 2197 110 35 27 chr12 48005176 48005548 -96276941 - THE1C LTR MaLR 0 375 1 966 231 24 47 chr12 48005548 48005652 -96276837 + MIR SINE MIR 156 261 -1 304 246 0 0 chr12 48005990 48006051 -96276438 - L2 LINE L2 -7 3306 3246 3520 181 95 20 chr12 48006228 48006974 -96275515 - MER21B LTR ERV1 -61 802 1 1668 178 21 66 chr12 48007079 48007501 -96274988 + MER57A LTR ERV1 1 403 0 2260 133 99 22 chr12 48007681 48008096 -96274393 - MER72 LTR ERV1 0 722 276 6381 173 165 20 chr12 48008102 48009635 -96272854 - MER52A LTR ERV1 0 1755 1 1369 168 22 11 chr12 48009637 48009905 -96272584 - MER72 LTR ERV1 -451 271 1 2341 80 0 0 chr12 48010877 48011164 -96271325 + AluSg SINE Alu 1 287 -23 237 33 0 0 chr12 48011643 48011673 -96270816 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 579 274 33 52 chr12 48013395 48013612 -96268877 - L1MEc LINE L1 -4729 1581 1372 1924 130 27 30 chr12 48013612 48013911 -96268578 - AluSx SINE Alu -14 298 1 579 274 33 52 chr12 48013911 48014055 -96268434 - L1MEc LINE L1 -4938 1372 1227 243 0 0 0 chr12 48014077 48014104 -96268385 + (TA)n Simple_repeat Simple_repeat 2 28 0 868 92 8 0 chr12 48014110 48014241 -96268248 - L1PA13 LINE L1 0 6163 6032 340 283 66 75 chr12 48014256 48014482 -96268007 - L1MEc LINE L1 -5732 387 164 313 205 0 51 chr12 48014530 48014608 -96267881 - L1MEc LINE L1 -5974 145 72 1510 127 4 8 chr12 48014684 48014921 -96267568 + L1PA11 LINE L1 5935 6170 -4 410 260 191 12 chr12 48015013 48015186 -96267303 - MIR SINE MIR -4 258 55 351 0 0 0 chr12 48015720 48015759 -96266730 + (TG)n Simple_repeat Simple_repeat 2 40 0 1692 187 0 7 chr12 48015761 48016044 -96266445 - AluJb SINE Alu -31 281 1 478 207 207 0 chr12 48016051 48016191 -96266298 - L1PB4 LINE L1 -2 6154 5986 249 253 48 24 chr12 48016376 48016459 -96266030 + MER94 DNA DNA 41 125 -9 267 304 38 70 chr12 48017100 48017258 -96265231 + L3 LINE CR1 966 1118 -459 494 340 140 13 chr12 48017412 48017877 -96264612 + L2 LINE L2 1488 2011 -1303 844 102 0 0 chr12 48017879 48017997 -96264492 + AluSc SINE Alu 192 309 0 200 317 0 37 chr12 48018024 48018106 -96264383 + L2 LINE L2 1999 2077 -1237 2088 189 59 4 chr12 48018119 48018591 -96263898 - LTR54B LTR ERV1 0 498 1 360 332 224 19 chr12 48018642 48019061 -96263428 + L2 LINE L2 2200 2704 -610 197 250 53 26 chr12 48019276 48019352 -96263137 + L2 LINE L2 3008 3085 -187 586 265 62 6 chr12 48019454 48019616 -96262873 - MIR SINE MIR 0 262 92 230 322 33 22 chr12 48019749 48019825 -96262664 + L3 LINE CR1 1305 1384 -193 1724 168 3 14 chr12 48019825 48020117 -96262372 + AluJo SINE Alu 1 289 -23 230 322 33 22 chr12 48020117 48020130 -96262359 + L3 LINE CR1 1384 1395 -182 203 208 0 19 chr12 48020255 48020308 -96262181 + T-rich Low_complexity Low_complexity 5 56 0 380 163 245 0 chr12 48020532 48020630 -96261859 + L2 LINE L2 3187 3308 -5 211 271 0 0 chr12 48020707 48020755 -96261734 + L3 LINE CR1 1494 1541 -36 198 103 0 0 chr12 48020801 48020830 -96261659 + (GAAAA)n Simple_repeat Simple_repeat 3 31 0 1078 203 77 0 chr12 48021093 48021300 -96261189 + AluJb SINE Alu 87 309 -3 336 122 0 0 chr12 48022333 48022382 -96260107 + MER66A LTR ERV1 289 337 -141 25 0 0 0 chr12 48022382 48022407 -96260082 + AT_rich Low_complexity Low_complexity 1 25 0 30 89 0 0 chr12 48022718 48022797 -96259692 + AT_rich Low_complexity Low_complexity 1 79 0 2045 160 15 0 chr12 48023299 48023642 -96258847 - MER7A DNA MER2_type 0 346 1 1753 170 14 0 chr12 48023789 48024092 -96258397 - AluJb SINE Alu 0 307 1 1738 141 25 21 chr12 48024195 48024479 -96258010 - AluJb SINE Alu -17 295 11 669 130 0 19 chr12 48024565 48024673 -96257816 - FLAM_A SINE Alu -16 126 21 197 33 33 0 chr12 48024767 48024797 -96257692 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1520 178 37 0 chr12 48024848 48025118 -96257371 - AluJo SINE Alu -14 298 19 265 259 170 9 chr12 48027361 48027473 -96255016 - L2 LINE L2 0 3313 3184 388 188 50 0 chr12 48027617 48027697 -96254792 - MER103 DNA DNA -73 93 10 327 311 0 0 chr12 48027710 48027800 -96254689 + L1MC4 LINE L1 6614 6703 -1339 * 329 311 0 0 chr12 48027744 48027834 -96254655 - L1MC4 LINE L1 -1339 6703 6614 565 251 6 6 chr12 48027839 48028018 -96254471 + (TA)n Simple_repeat Simple_repeat 1 179 0 1585 188 27 3 chr12 48028500 48028793 -96253696 - AluJo SINE Alu -12 300 1 807 149 21 57 chr12 48029697 48029838 -96252651 - AluJo SINE Alu -176 136 1 1506 170 60 7 chr12 48031138 48031438 -96251051 - MLT1A1 LTR MaLR -11 354 39 1777 165 0 26 chr12 48031958 48032267 -96250222 + AluJo SINE Alu 1 301 -11 207 0 0 0 chr12 48032631 48032654 -96249835 + (T)n Simple_repeat Simple_repeat 1 23 0 714 178 0 0 chr12 48032915 48033033 -96249456 - FLAM_C SINE Alu -15 118 1 1490 169 12 75 chr12 48034087 48034406 -96248083 + AluJo SINE Alu 1 299 -13 21 0 0 0 chr12 48035838 48035859 -96246630 + AT_rich Low_complexity Low_complexity 1 21 0 576 139 0 0 chr12 48036257 48036343 -96246146 - FRAM/FAM SINE Alu -91 85 1 21 0 0 0 chr12 48036915 48036936 -96245553 + AT_rich Low_complexity Low_complexity 1 21 0 307 258 140 54 chr12 48041042 48041263 -96241226 - L1M2 LINE L1 -5931 918 679 21 0 0 0 chr12 48041348 48041369 -96241120 + GC_rich Low_complexity Low_complexity 1 21 0 320 129 24 35 chr12 48041642 48041727 -96240762 + CT-rich Low_complexity Low_complexity 4 87 0 375 23 0 0 chr12 48041728 48041772 -96240717 + (CCG)n Simple_repeat Simple_repeat 1 44 0 331 318 106 62 chr12 48042262 48042602 -96239887 - L1M2 LINE L1 -5845 1004 650 198 0 0 0 chr12 48042936 48042958 -96239531 + (T)n Simple_repeat Simple_repeat 1 22 0 27 49 0 0 chr12 48043939 48043980 -96238509 + AT_rich Low_complexity Low_complexity 1 41 0 430 114 0 0 chr12 48046020 48046090 -96236399 + L1MA3 LINE L1 6236 6305 0 2168 105 0 0 chr12 48046149 48046467 -96236022 + AluSx SINE Alu 1 318 0 378 0 0 0 chr12 48047481 48047523 -96234966 + (TG)n Simple_repeat Simple_repeat 2 43 0 616 164 9 17 chr12 48047523 48047639 -96234850 - FLAM_C SINE Alu -18 115 1 2363 81 0 3 chr12 48048137 48048434 -96234055 + AluY SINE Alu 1 296 -15 367 160 0 27 chr12 48048838 48048913 -96233576 + MER103 DNA DNA 42 114 -52 225 62 0 0 chr12 48049010 48049042 -96233447 + HSMAR1 DNA Mariner 1256 1287 0 410 230 81 57 chr12 48049411 48049708 -96232781 - L1MC5 LINE L1 -466 7495 7238 290 190 0 17 chr12 48049723 48049781 -96232708 + MER5A DNA MER1_type 128 184 -5 24 0 0 0 chr12 48050070 48050094 -96232395 + AT_rich Low_complexity Low_complexity 1 24 0 2122 128 16 3 chr12 48050367 48050673 -96231816 - AluSx SINE Alu -2 310 1 306 0 0 0 chr12 48050842 48050876 -96231613 + (T)n Simple_repeat Simple_repeat 1 34 0 2202 98 7 33 chr12 48051035 48051341 -96231148 - AluSq SINE Alu -15 298 1 456 32 0 0 chr12 48051501 48051564 -96230925 - AluY SINE Alu -6 306 244 26 30 0 0 chr12 48051820 48051853 -96230636 + AT_rich Low_complexity Low_complexity 1 33 0 2824 230 194 42 chr12 48052634 48053247 -96229242 - L1MC4 LINE L1 -216 7826 7308 1611 170 10 39 chr12 48053247 48053559 -96228930 - AluJb SINE Alu -9 303 1 2824 230 194 42 chr12 48053559 48054223 -96228266 - L1MC4 LINE L1 -734 7308 6342 1530 174 24 7 chr12 48054244 48054532 -96227957 + MER7A DNA MER2_type 1 291 -55 1129 208 78 76 chr12 48054624 48055086 -96227403 - L1MC4 LINE L1 -1925 5883 5421 1949 121 0 56 chr12 48055134 48055440 -96227049 + AluSg SINE Alu 1 289 -21 739 258 13 0 chr12 48055441 48055596 -96226893 - FAM SINE Alu -17 158 2 595 281 86 51 chr12 48055679 48056252 -96226237 - L1MC4 LINE L1 -1488 4658 4066 2008 132 3 7 chr12 48057623 48057911 -96224578 - AluSx SINE Alu -25 287 1 1646 171 10 29 chr12 48058163 48058472 -96224017 - AluJb SINE Alu -9 303 1 590 229 102 6 chr12 48058658 48058824 -96223665 - MIR SINE MIR -5 257 76 2410 54 0 10 chr12 48058837 48059131 -96223358 - AluY SINE Alu -20 291 1 23 0 0 0 chr12 48059279 48059302 -96223187 + AT_rich Low_complexity Low_complexity 1 23 0 230 253 120 13 chr12 48059358 48059433 -96223056 - MIR SINE MIR -56 206 124 14512 128 38 5 chr12 48059971 48060142 -96222347 - Tigger1 DNA MER2_type 0 2418 2254 1473 156 12 111 chr12 48060142 48060476 -96222013 + AluJb SINE Alu 1 301 -11 14512 128 38 5 chr12 48060476 48062646 -96219843 - Tigger1 DNA MER2_type -164 2254 1 885 247 86 16 chr12 48062787 48063030 -96219459 - MIR SINE MIR -1 261 2 771 255 178 34 chr12 48063036 48063620 -96218869 - L2 LINE L2 0 3313 2622 2166 129 18 0 chr12 48063639 48063971 -96218518 - MER7A DNA MER2_type -10 336 1 298 261 33 43 chr12 48063971 48064063 -96218426 - L2 LINE L2 -700 2614 2524 318 331 62 15 chr12 48064362 48064492 -96217997 + L2 LINE L2 3137 3272 0 1524 173 94 7 chr12 48064581 48064858 -96217631 - AluJo SINE Alu -11 301 1 1906 81 3 121 chr12 48065041 48065373 -96217116 + AluSg1 SINE Alu 1 293 -16 689 229 154 18 chr12 48065396 48065623 -96216866 + MIR SINE MIR 5 262 0 1964 121 32 0 chr12 48065665 48065946 -96216543 - AluJo SINE Alu -12 300 11 386 273 165 21 chr12 48065953 48066195 -96216294 + MARNA DNA Mariner 268 544 -42 746 357 27 53 chr12 48066514 48066926 -96215563 + L2 LINE L2 2872 3272 0 2164 118 0 0 chr12 48067971 48068268 -96214221 - AluSx SINE Alu -15 297 1 999 169 0 3 chr12 48068747 48068978 -96213511 + AluJb SINE Alu 1 299 -13 1065 86 132 86 chr12 48070342 48070562 -96211927 - MER30 DNA MER1_type 0 230 1 991 269 138 15 chr12 48070627 48070954 -96211535 - MLT1J LTR MaLR -45 466 100 202 244 0 0 chr12 48071067 48071112 -96211377 + (TA)n Simple_repeat Simple_repeat 2 46 0 581 153 54 18 chr12 48071808 48071919 -96210570 - FLAM_A SINE Alu -18 115 1 444 285 146 16 chr12 48072145 48072391 -96210098 - L1MDa LINE L1 -3201 3339 3062 240 185 0 37 chr12 48072530 48072611 -96209878 + T-rich Low_complexity Low_complexity 1 78 0 24 67 0 0 chr12 48072880 48072925 -96209564 + AT_rich Low_complexity Low_complexity 1 45 0 693 251 6 6 chr12 48072925 48073088 -96209401 - FRAM SINE Alu -3 163 1 255 193 125 38 chr12 48073089 48073193 -96209296 - L1MDa LINE L1 -3929 2611 2499 354 314 73 51 chr12 48073379 48073911 -96208578 - HAL1 LINE L1 -744 1763 1220 331 324 69 63 chr12 48073952 48074270 -96208219 - HAL1 LINE L1 -1334 1173 854 241 281 31 0 chr12 48075037 48075101 -96207388 - MIR SINE MIR -1 261 196 2090 113 0 3 chr12 48075251 48075544 -96206945 + AluSg SINE Alu 1 292 -18 943 215 70 19 chr12 48075639 48075853 -96206636 - AluJo SINE Alu -87 225 1 21 82 0 0 chr12 48076209 48076258 -96206231 + AT_rich Low_complexity Low_complexity 1 49 0 3091 234 36 27 chr12 48076426 48077263 -96205226 - L1ME1 LINE L1 -3 6163 5311 1747 184 3 13 chr12 48077263 48077573 -96204916 - AluJb SINE Alu -5 307 1 3091 234 36 27 chr12 48077573 48077698 -96204791 - L1ME1 LINE L1 -855 5311 5189 1404 228 81 39 chr12 48077781 48078235 -96204254 - L1ME1 LINE L1 -46 6120 5687 2200 108 3 3 chr12 48078235 48078530 -96203959 - AluSx SINE Alu -17 295 1 1404 228 81 39 chr12 48078530 48078566 -96203923 - L1ME1 LINE L1 -479 5687 5654 2417 81 0 3 chr12 48078566 48078876 -96203613 - AluY SINE Alu -2 309 1 1404 228 81 39 chr12 48078876 48078900 -96203589 - L1ME1 LINE L1 -512 5654 5588 1180 76 0 0 chr12 48078903 48079047 -96203442 + AluSp/q SINE Alu 156 299 -14 996 228 84 21 chr12 48079063 48079487 -96203002 - L1ME1 LINE L1 -613 5553 5103 670 214 0 0 chr12 48079610 48079741 -96202748 + FLAM_C SINE Alu 2 132 -1 5370 255 97 21 chr12 48079958 48082035 -96200454 + L1M4b LINE L1 10 2230 -4729 2410 72 3 0 chr12 48082035 48082339 -96200150 + AluY SINE Alu 1 305 -6 5370 255 97 21 chr12 48082339 48082411 -96200078 + L1M4b LINE L1 2230 2295 -4664 296 229 0 29 chr12 48082411 48082481 -96200008 - LTR28 LTR ERV1 0 1020 953 2499 179 44 8 chr12 48082569 48083048 -96199441 - LTR27 LTR ERV1 -134 502 7 1504 108 5 0 chr12 48083223 48083436 -96199053 + AluSg/x SINE Alu 86 299 -13 1543 205 0 27 chr12 48083445 48083738 -96198751 + AluJo SINE Alu 1 285 -27 4426 240 42 44 chr12 48083981 48084372 -96198117 + L1M4b LINE L1 2610 3001 -3956 671 200 8 8 chr12 48084372 48084492 -96197997 + FLAM_A SINE Alu 2 121 -12 4426 240 42 44 chr12 48084492 48085925 -96196564 + L1M4b LINE L1 3001 4419 -2538 27 0 0 0 chr12 48086195 48086222 -96196267 + AT_rich Low_complexity Low_complexity 1 27 0 202 214 24 0 chr12 48086570 48086612 -96195877 + (TG)n Simple_repeat Simple_repeat 2 44 0 1121 206 28 5 chr12 48086951 48087165 -96195324 + MER20 DNA MER1_type 1 219 0 898 171 74 6 chr12 48088169 48088345 -96194144 + MER5A DNA MER1_type 1 188 -1 828 125 0 0 chr12 48088730 48088842 -96193647 + AluJo/FLAM SINE Alu 1 112 -200 2000 132 7 29 chr12 48088844 48089154 -96193335 - AluSx SINE Alu -9 303 1 25 31 0 0 chr12 48089162 48089194 -96193295 + AT_rich Low_complexity Low_complexity 1 32 0 71 13 0 0 chr12 48089842 48089920 -96192569 + AT_rich Low_complexity Low_complexity 1 78 0 2109 99 14 3 chr12 48089986 48090280 -96192209 + AluSq SINE Alu 1 297 -16 39 0 0 0 chr12 48090722 48090761 -96191728 + AT_rich Low_complexity Low_complexity 1 39 0 400 238 54 27 chr12 48090852 48090999 -96191490 - L1ME4a LINE L1 -3 6118 5968 21 0 0 0 chr12 48090999 48091020 -96191469 + AT_rich Low_complexity Low_complexity 1 21 0 546 283 31 0 chr12 48091225 48091384 -96191105 - L1ME4a LINE L1 -435 5686 5523 30 45 0 0 chr12 48091790 48091834 -96190655 + AT_rich Low_complexity Low_complexity 1 44 0 519 322 74 25 chr12 48091928 48092170 -96190319 + MIR SINE MIR 5 258 -4 328 250 170 9 chr12 48092190 48092302 -96190187 - L2 LINE L2 0 3313 3184 2148 101 0 3 chr12 48092673 48092982 -96189507 - AluSq SINE Alu 0 308 1 941 231 3 88 chr12 48093144 48093439 -96189050 - MLT1E LTR MaLR -2 591 322 327 179 228 16 chr12 48093818 48093941 -96188548 - MER103 DNA DNA -15 151 3 2116 118 0 0 chr12 48094412 48094701 -96187788 + AluSx SINE Alu 1 289 -23 229 371 0 29 chr12 48094728 48094833 -96187656 - MIR SINE MIR -160 102 1 1891 123 0 79 chr12 48094889 48095207 -96187282 + AluSx SINE Alu 1 293 -19 1719 154 67 13 chr12 48095538 48095837 -96186652 - MER1B DNA MER1_type 0 339 25 464 130 7 20 chr12 48095829 48095921 -96186568 + MSTB2 LTR MaLR 266 445 -12 * 1385 217 20 17 chr12 48096050 48096228 -96186261 - AluJo SINE Alu -12 300 119 183 114 0 0 chr12 48096228 48096263 -96186226 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1385 217 20 17 chr12 48096263 48096383 -96186106 - AluJo SINE Alu -193 119 1 1204 133 82 10 chr12 48096545 48096740 -96185749 + AluJb SINE Alu 88 296 -16 21 0 0 0 chr12 48096865 48096886 -96185603 + AT_rich Low_complexity Low_complexity 1 21 0 233 298 36 12 chr12 48096955 48097039 -96185450 - MIR SINE MIR -108 154 69 442 309 73 24 chr12 48097230 48097395 -96185094 + MIR SINE MIR 1 173 -89 1054 139 92 101 chr12 48097633 48097871 -96184618 + MER46A DNA MER2_type 1 236 0 276 178 0 0 chr12 48097957 48098002 -96184487 + Charlie3 DNA MER1_type 1 45 -2665 * 418 156 0 0 chr12 48097993 48098057 -96184432 + Charlie3 DNA MER1_type 2639 2702 -8 22 0 0 0 chr12 48098185 48098207 -96184282 + AT_rich Low_complexity Low_complexity 1 22 0 3877 153 42 34 chr12 48098561 48099272 -96183217 + L1MA8 LINE L1 5492 6211 -80 1869 140 3 53 chr12 48099272 48099594 -96182895 - AluJb SINE Alu -4 308 3 3877 153 42 34 chr12 48099594 48099672 -96182817 + L1MA8 LINE L1 6211 6287 -4 604 169 39 0 chr12 48100034 48100164 -96182325 - L1MA8 LINE L1 0 6291 6157 332 344 142 4 chr12 48100355 48100515 -96181974 - MIR SINE MIR -79 183 6 230 324 287 0 chr12 48101142 48101250 -96181239 + MIR SINE MIR 11 149 -113 612 276 95 35 chr12 48101443 48101895 -96180594 - L1M4 LINE L1 -3319 2827 2349 705 206 14 0 chr12 48101897 48102038 -96180451 + FLAM_C SINE Alu 1 143 0 234 275 269 26 chr12 48102443 48102792 -96179697 - L1MEc LINE L1 -1528 4687 4254 279 305 146 0 chr12 48102805 48102969 -96179520 - L1MEc LINE L1 -2008 4207 4020 1682 149 25 10 chr12 48102980 48103267 -96179222 - L1M3 LINE L1 -397 5774 5469 270 0 0 0 chr12 48103267 48103297 -96179192 + (TG)n Simple_repeat Simple_repeat 1 30 0 1682 149 25 10 chr12 48103297 48103328 -96179161 - L1M3 LINE L1 -702 5469 5440 461 250 98 0 chr12 48103351 48103535 -96178954 - L1MEc LINE L1 -2206 4009 3808 188 35 35 0 chr12 48103647 48103676 -96178813 + (ATTG)n Simple_repeat Simple_repeat 4 33 0 842 171 0 14 chr12 48103676 48103822 -96178667 - AluJb SINE Alu -32 280 137 814 272 86 49 chr12 48103971 48104941 -96177548 - L1MEc LINE L1 -2826 3389 2369 486 309 73 20 chr12 48104956 48105079 -96177410 - L1MEc LINE L1 -4049 2347 2232 2105 113 7 3 chr12 48105079 48105371 -96177118 + AluSq SINE Alu 1 293 -20 486 309 73 20 chr12 48105371 48105493 -96176996 - L1MEc LINE L1 -4164 2232 2089 201 74 0 0 chr12 48105606 48105633 -96176856 + (TG)n Simple_repeat Simple_repeat 2 28 0 275 254 35 29 chr12 48105635 48105808 -96176681 + (TA)n Simple_repeat Simple_repeat 1 174 0 1760 142 51 0 chr12 48106117 48106413 -96176076 - MER44D DNA MER2_type -4 601 419 245 207 49 61 chr12 48106830 48106912 -96175577 - MARNA DNA Mariner -324 262 182 25 65 0 0 chr12 48107162 48107208 -96175281 + AT_rich Low_complexity Low_complexity 1 46 0 324 323 13 25 chr12 48107456 48107485 -96175004 + CT-rich Low_complexity Low_complexity 3 31 -127 2449 45 0 16 chr12 48107485 48107798 -96174691 - AluY SINE Alu -3 308 1 324 323 13 25 chr12 48107798 48107926 -96174563 + CT-rich Low_complexity Low_complexity 31 158 0 26 50 0 0 chr12 48108233 48108273 -96174216 + AT_rich Low_complexity Low_complexity 1 40 0 227 291 175 10 chr12 48108295 48108501 -96173988 - L1ME LINE L1 -206 5915 5676 1810 152 22 0 chr12 48108565 48108870 -96173619 - AluSx SINE Alu 0 311 1 299 330 27 21 chr12 48108874 48109062 -96173427 - L1ME LINE L1 -456 5665 5477 21 89 0 0 chr12 48109143 48109199 -96173290 + AT_rich Low_complexity Low_complexity 1 56 0 2135 126 3 0 chr12 48109287 48109596 -96172893 - AluSx SINE Alu -2 310 1 327 311 109 23 chr12 48109596 48109853 -96172636 - L1ME LINE L1 -983 5163 4885 26 50 0 0 chr12 48109913 48109953 -96172536 + AT_rich Low_complexity Low_complexity 1 40 0 325 255 199 63 chr12 48110104 48110390 -96172099 - L1MC4a LINE L1 -1871 5937 5613 23 78 0 0 chr12 48110969 48111020 -96171469 + AT_rich Low_complexity Low_complexity 1 51 0 28 109 0 0 chr12 48111060 48111179 -96171310 + AT_rich Low_complexity Low_complexity 1 119 0 586 276 8 15 chr12 48111185 48111319 -96171170 + L2 LINE L2 3136 3268 -4 638 246 138 9 chr12 48111339 48111571 -96170918 - Charlie7 DNA MER1_type -316 2296 2035 1555 214 3 3 chr12 48111906 48112210 -96170279 - AluJb SINE Alu -6 306 3 23 33 0 0 chr12 48112254 48112284 -96170205 + AT_rich Low_complexity Low_complexity 1 30 0 3464 221 89 52 chr12 48112410 48113108 -96169381 + L1MC4 LINE L1 6446 7203 -839 2269 88 0 0 chr12 48113108 48113404 -96169085 + AluY SINE Alu 16 311 0 3464 221 89 52 chr12 48113404 48113811 -96168678 + L1MC4 LINE L1 7203 7593 -449 275 194 57 65 chr12 48113886 48114010 -96168479 + L1MC4 LINE L1 7919 8041 -1 1783 144 7 7 chr12 48114149 48114426 -96168063 - AluJb SINE Alu -32 280 4 2941 243 119 69 chr12 48114430 48116115 -96166374 - Charlie7 DNA MER1_type -707 1905 136 318 87 0 0 chr12 48116534 48116580 -96165909 + (TG)n Simple_repeat Simple_repeat 2 47 0 441 294 62 19 chr12 48116960 48117171 -96165318 - L1ME3 LINE L1 -215 5947 5728 1589 138 66 29 chr12 48117676 48118023 -96164466 - L1MA9 LINE L1 -1 6311 5952 248 251 120 74 chr12 48118028 48118394 -96164095 - HAL1b LINE L1 -689 659 277 21 0 0 0 chr12 48120623 48120644 -96161845 + AT_rich Low_complexity Low_complexity 1 21 0 417 70 0 0 chr12 48120784 48120841 -96161648 + (TG)n Simple_repeat Simple_repeat 2 58 0 1766 153 3 14 chr12 48120841 48121123 -96161366 - AluSx SINE Alu -29 283 5 22 0 0 0 chr12 48121926 48121948 -96160541 + AT_rich Low_complexity Low_complexity 1 22 0 284 312 32 32 chr12 48122572 48122729 -96159760 + L1MC/D LINE L1 5724 5880 -1928 2441 64 0 0 chr12 48122990 48123288 -96159201 + AluY SINE Alu 1 298 -13 216 320 48 39 chr12 48123669 48123772 -96158717 - MIR3 SINE MIR -40 168 65 200 125 0 25 chr12 48124316 48124356 -96158133 + (TTA)n Simple_repeat Simple_repeat 2 40 0 461 305 84 28 chr12 48124672 48124885 -96157604 + L3 LINE CR1 1345 1569 -8 2123 98 14 11 chr12 48126433 48126718 -96155771 + AluSx SINE Alu 4 289 -23 207 0 0 0 chr12 48127662 48127685 -96154804 + (TG)n Simple_repeat Simple_repeat 2 24 0 1486 207 7 0 chr12 48127743 48128023 -96154466 - AluJo SINE Alu -30 282 1 2315 204 129 9 chr12 48128287 48129093 -96153396 + L1ME1 LINE L1 5056 6160 -6 1452 180 24 7 chr12 48129140 48129429 -96153060 + AluJo SINE Alu 3 296 -16 264 40 60 0 chr12 48129596 48129646 -96152843 + (TA)n Simple_repeat Simple_repeat 2 54 0 2029 142 0 16 chr12 48131789 48132106 -96150383 - AluSx SINE Alu 0 312 1 1589 133 3 117 chr12 48134282 48134606 -96147883 + AluJo SINE Alu 1 287 -15 25 0 0 0 chr12 48134620 48134645 -96147844 + AT_rich Low_complexity Low_complexity 1 25 0 7482 191 51 16 chr12 48134755 48136516 -96145973 + L1MA4 LINE L1 2345 4166 -1980 3112 155 40 11 chr12 48136537 48136918 -96145571 + L1MA4 LINE L1 5343 5712 -588 282 56 0 0 chr12 48136918 48136954 -96145535 + (TA)n Simple_repeat Simple_repeat 1 36 0 3112 155 40 11 chr12 48136954 48137449 -96145040 + L1MA4 LINE L1 5712 6293 -7 1462 203 0 4 chr12 48137677 48137943 -96144546 + AluJo SINE Alu 35 299 -13 25 0 0 0 chr12 48138148 48138173 -96144316 + AT_rich Low_complexity Low_complexity 1 25 0 1423 198 31 20 chr12 48138485 48138778 -96143711 - AluJo SINE Alu -3 299 4 319 268 186 15 chr12 48138783 48139122 -96143367 - L1ME4a LINE L1 -12 6109 5713 867 320 110 30 chr12 48139482 48139920 -96142569 - L2 LINE L2 0 3313 2841 1566 241 125 30 chr12 48140125 48141310 -96141179 - L1ME3 LINE L1 -46 6099 4773 228 300 0 0 chr12 48141800 48141880 -96140609 + T-rich Low_complexity Low_complexity 1 80 0 336 257 121 7 chr12 48141893 48142033 -96140456 - L1ME3 LINE L1 -5056 1063 908 209 182 26 39 chr12 48142112 48142189 -96140300 + (TAAA)n Simple_repeat Simple_repeat 3 78 0 248 344 165 40 chr12 48142239 48142687 -96139802 - L1ME3 LINE L1 -5384 735 232 1833 117 52 28 chr12 48142830 48143120 -96139369 + AluSx SINE Alu 1 297 -15 352 273 101 0 chr12 48143300 48143439 -96139050 - L1MEc LINE L1 -3115 3267 3115 1833 134 92 0 chr12 48143445 48143773 -96138716 - L1MA3 LINE L1 0 6305 5948 656 256 12 0 chr12 48143774 48143942 -96138547 - L1MEc LINE L1 -3566 2816 2647 302 259 85 66 chr12 48143964 48144176 -96138313 - L1MEc LINE L1 -3952 2611 2396 547 302 133 3 chr12 48144178 48144532 -96137957 - L1MEc LINE L1 -4693 1691 1292 1061 173 0 0 chr12 48144534 48144702 -96137787 - FRAM SINE Alu -7 169 2 303 249 35 19 chr12 48144704 48144732 -96137757 - L1MEc LINE L1 -5097 1411 1385 1003 187 131 59 chr12 48144732 48145053 -96137436 - MER2 DNA MER2_type 0 344 1 303 249 35 19 chr12 48145053 48145184 -96137305 - L1MEc LINE L1 -5123 1385 1180 233 176 98 0 chr12 48145219 48145270 -96137219 + Tigger5 DNA MER2_type 1 56 -2267 521 129 94 0 chr12 48145274 48145359 -96137130 + Tigger5 DNA MER2_type 2231 2323 0 879 305 123 29 chr12 48145359 48146270 -96136219 - L1MEc LINE L1 -5344 1219 223 263 260 24 87 chr12 48146433 48146513 -96135976 - L1MEd LINE L1 -4701 1683 1612 2035 116 10 33 chr12 48146513 48146814 -96135675 + AluSx SINE Alu 1 294 -18 263 260 24 87 chr12 48146814 48146860 -96135629 - L1MEd LINE L1 -4772 1612 1565 673 292 61 18 chr12 48146863 48147382 -96135107 - L1MEd LINE L1 -4862 1510 1023 299 281 66 25 chr12 48147471 48147592 -96134897 - Charlie4 DNA MER1_type -15 1946 1821 463 179 17 144 chr12 48147595 48147682 -96134807 - Charlie4 DNA MER1_type -1789 172 116 2329 91 0 7 chr12 48147682 48147991 -96134498 + AluSc SINE Alu 1 307 -2 463 179 17 144 chr12 48147991 48148076 -96134413 - Charlie4 DNA MER1_type -1845 116 22 22 35 0 0 chr12 48148257 48148286 -96134203 + AT_rich Low_complexity Low_complexity 1 29 0 1666 168 0 20 chr12 48148286 48148578 -96133911 - AluJo SINE Alu -26 286 1 25 0 0 0 chr12 48149301 48149326 -96133163 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr12 48149992 48150025 -96132464 + AT_rich Low_complexity Low_complexity 1 33 0 318 314 16 103 chr12 48150480 48150549 -96131940 - MER5A DNA MER1_type 0 189 116 1786 157 18 7 chr12 48150549 48150835 -96131654 + AluJb SINE Alu 2 290 -22 183 114 0 0 chr12 48150835 48150870 -96131619 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 318 314 16 103 chr12 48150870 48150926 -96131563 - MER5A DNA MER1_type -72 117 83 2232 77 23 20 chr12 48150926 48151226 -96131263 - AluY SINE Alu -10 301 1 318 314 16 103 chr12 48151226 48151292 -96131197 - MER5A DNA MER1_type -106 83 13 996 188 155 32 chr12 48153601 48154033 -96128456 - Charlie2a DNA MER1_type -6 2856 2372 1285 168 113 29 chr12 48154038 48154312 -96128177 + AluJo SINE Alu 1 297 -15 293 289 0 0 chr12 48154349 48154439 -96128050 + L1MC4 LINE L1 6614 6703 -1339 1538 215 120 39 chr12 48154459 48154539 -96127950 - Charlie2a DNA MER1_type -505 2357 2285 2327 92 0 0 chr12 48154539 48154832 -96127657 + AluSc SINE Alu 1 293 -16 1538 215 120 39 chr12 48154832 48155319 -96127170 - Charlie2a DNA MER1_type -577 2285 1744 457 198 158 0 chr12 48155327 48155428 -96127061 - MER5A DNA MER1_type 0 189 73 1256 142 46 14 chr12 48155430 48155649 -96126840 - AluJb SINE Alu -4 308 83 339 247 14 0 chr12 48155651 48155724 -96126765 - MER5A DNA MER1_type -114 75 2 880 208 68 30 chr12 48155724 48155989 -96126500 - Charlie2a DNA MER1_type -1118 1744 1470 1147 233 118 37 chr12 48156028 48156083 -96126406 - Charlie2b DNA MER1_type -2110 672 623 1552 181 64 17 chr12 48156083 48156381 -96126108 - AluJo SINE Alu 0 312 1 1147 233 118 37 chr12 48156381 48156673 -96125816 - Charlie2b DNA MER1_type -2159 623 297 541 251 218 14 chr12 48156702 48156913 -96125576 - MIR SINE MIR 0 262 9 475 247 211 0 chr12 48156935 48157125 -96125364 - Charlie2b DNA MER1_type -2542 240 11 298 232 110 0 chr12 48157539 48157621 -96124868 + MIR SINE MIR 60 150 -112 389 248 233 8 chr12 48158506 48158635 -96123854 + MIR SINE MIR 79 236 -26 224 272 37 25 chr12 48158689 48158770 -96123719 + MIR SINE MIR 175 256 -6 3496 123 10 8 chr12 48165966 48166471 -96116018 + MER1A DNA MER1_type 24 529 0 486 232 148 7 chr12 48166908 48167063 -96115426 - MIR SINE MIR -70 192 16 188 256 0 23 chr12 48167543 48167586 -96114903 + L2 LINE L2 3210 3251 -21 1587 167 0 69 chr12 48167775 48168093 -96114396 - AluJo SINE Alu -16 296 1 2249 109 20 0 chr12 48168125 48168429 -96114060 - AluSg SINE Alu 0 310 1 21 0 0 0 chr12 48168876 48168897 -96113592 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr12 48169804 48169833 -96112656 + (TC)n Simple_repeat Simple_repeat 2 30 0 1958 152 0 0 chr12 48169833 48170122 -96112367 - AluJb SINE Alu -23 289 1 862 130 0 0 chr12 48170307 48170422 -96112067 + FRAM SINE Alu 31 145 -31 186 43 0 0 chr12 48170423 48170446 -96112043 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 509 289 114 5 chr12 48170663 48170864 -96111625 - MIR SINE MIR -12 250 28 1921 152 42 6 chr12 48171193 48171529 -96110960 + MER7A DNA MER2_type 1 346 0 2218 90 10 0 chr12 48171804 48172094 -96110395 - AluSx SINE Alu -19 293 1 621 261 5 48 chr12 48172113 48172301 -96110188 + AluJo SINE Alu 118 297 -15 28 29 0 0 chr12 48172590 48172625 -96109864 + AT_rich Low_complexity Low_complexity 1 35 0 36 62 0 0 chr12 48172657 48172721 -96109768 + AT_rich Low_complexity Low_complexity 1 64 0 1862 144 44 3 chr12 48173637 48173935 -96108554 - AluSx SINE Alu -2 310 1 317 243 157 49 chr12 48174179 48174364 -96108125 - MER112 DNA MER1_type -15 245 41 744 183 0 8 chr12 48174630 48174761 -96107728 + FLAM_A SINE Alu 7 136 -6 206 361 172 16 chr12 48175221 48175343 -96107146 - L2 LINE L2 -245 3027 2887 908 169 0 36 chr12 48175502 48175668 -96106821 + FRAM SINE Alu 1 160 -16 1683 171 0 32 chr12 48175897 48176207 -96106282 - AluJb SINE Alu 0 312 13 1038 186 98 104 chr12 48176302 48176861 -96105628 - L1MC5 LINE L1 -234 7727 7172 570 221 23 0 chr12 48176873 48177004 -96105485 - L1MC5 LINE L1 -855 7106 6973 289 221 5 168 chr12 48177038 48177228 -96105261 - L1MC5 LINE L1 -1000 6961 6803 306 379 14 0 chr12 48177231 48177376 -96105113 - L1MC4a LINE L1 -1218 6590 6444 22 94 0 0 chr12 48177965 48178029 -96104460 + AT_rich Low_complexity Low_complexity 1 64 0 373 275 130 34 chr12 48178406 48178668 -96103821 - L1MC4a LINE L1 -2025 5783 5497 1014 180 111 0 chr12 48178748 48178965 -96103524 - L1MC1 LINE L1 0 6333 6093 342 0 0 0 chr12 48178991 48179029 -96103460 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2043 132 0 0 chr12 48179031 48179311 -96103178 - AluSg SINE Alu -30 280 1 918 203 6 6 chr12 48179323 48179486 -96103003 - AluJb SINE Alu -20 292 130 186 71 0 0 chr12 48180294 48180322 -96102167 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2277 76 0 10 chr12 48180397 48180698 -96101791 - AluY SINE Alu -13 298 1 5047 177 26 14 chr12 48180708 48181714 -96100775 - L1MC2 LINE L1 -24 7115 6098 3307 226 58 25 chr12 48181709 48182826 -96099663 - L1MC2 LINE L1 -2179 4762 3609 * 1725 105 14 16 chr12 48182827 48183122 -96099367 - THE1C LTR MaLR -2 373 1 2138 214 96 11 chr12 48183128 48183985 -96098504 - L1MC2 LINE L1 -3334 3607 2675 13883 133 38 19 chr12 48183985 48184450 -96098039 - Tigger1 DNA MER2_type 0 2418 1963 2014 167 3 0 chr12 48184450 48184756 -96097733 + 7SLRNA srpRNA srpRNA 8 314 -6 13883 133 38 19 chr12 48184756 48185252 -96097237 - Tigger1 DNA MER2_type -455 1963 1478 1532 208 7 0 chr12 48185252 48185546 -96096943 + AluJo SINE Alu 1 296 -16 13883 133 38 19 chr12 48185546 48186679 -96095810 - Tigger1 DNA MER2_type -940 1478 368 2351 96 3 3 chr12 48186679 48186992 -96095497 + AluSp SINE Alu 1 313 0 13883 133 38 19 chr12 48186992 48187217 -96095272 - Tigger1 DNA MER2_type -2050 368 49 2292 89 0 10 chr12 48187217 48187520 -96094969 + AluY SINE Alu 1 300 -11 13883 133 38 19 chr12 48187520 48187570 -96094919 - Tigger1 DNA MER2_type -2369 49 1 3777 98 4 2 chr12 48187581 48188082 -96094407 + MER1A DNA MER1_type 28 529 0 3449 220 60 45 chr12 48188106 48190148 -96092341 - L1MC2 LINE L1 -4466 2656 11 180 77 0 0 chr12 48190925 48190951 -96091538 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 586 276 47 24 chr12 48190953 48191123 -96091366 + MIR SINE MIR 85 258 -4 193 152 0 152 chr12 48193256 48193322 -96089167 + L2 LINE L2 3257 3312 -1 486 284 142 14 chr12 48194070 48194288 -96088201 + MIR SINE MIR 3 248 -14 1962 144 4 0 chr12 48194526 48194828 -96087661 + AluSx SINE Alu 3 305 0 180 0 0 0 chr12 48195864 48195884 -96086605 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2551 111 16 0 chr12 48195988 48196357 -96086132 - THE1C LTR MaLR 0 375 1 7018 113 32 36 chr12 48196357 48197459 -96085030 - THE1C-int LTR MaLR 0 1580 484 23 0 0 0 chr12 48197655 48197678 -96084811 + AT_rich Low_complexity Low_complexity 1 23 0 194 298 61 53 chr12 48197786 48197917 -96084572 - L2 LINE L2 -1579 1735 1604 1565 166 14 8 chr12 48197952 48198252 -96084237 - MER61B LTR ERV1 -28 396 1 2084 57 0 0 chr12 48198372 48198619 -96083870 + AluY SINE Alu 50 296 -15 456 248 85 8 chr12 48199186 48199315 -96083174 + MER91B DNA MER1_type 26 164 -26 1864 133 29 7 chr12 48199315 48199594 -96082895 + AluSx SINE Alu 1 285 -27 254 280 56 28 chr12 48199687 48199830 -96082659 + L1ME4a LINE L1 5950 6096 -25 2194 101 0 13 chr12 48200063 48200361 -96082128 + AluSg SINE Alu 1 294 -16 28 48 0 0 chr12 48201107 48201149 -96081340 + AT_rich Low_complexity Low_complexity 1 42 0 2367 81 3 0 chr12 48201294 48201590 -96080899 + AluSg SINE Alu 1 297 -13 520 258 126 0 chr12 48202583 48202742 -96079747 + MIR3 SINE MIR 25 203 -5 214 171 0 0 chr12 48202889 48202924 -96079565 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 189 0 0 0 chr12 48203797 48203818 -96078671 + (TC)n Simple_repeat Simple_repeat 2 22 0 21 57 0 0 chr12 48204168 48204203 -96078286 + AT_rich Low_complexity Low_complexity 1 35 0 314 342 34 105 chr12 48205192 48205657 -96076832 + L2 LINE L2 2804 3235 -37 374 319 161 32 chr12 48205660 48205908 -96076581 + L2 LINE L2 2983 3262 -10 2238 98 0 0 chr12 48205956 48206242 -96076247 - AluSg SINE Alu -24 286 1 1112 195 32 0 chr12 48206245 48206496 -96075993 + L1MB3 LINE L1 4377 4635 -1511 2148 133 74 0 chr12 48206763 48207102 -96075387 + THE1B LTR MaLR 1 364 0 2109 233 98 11 chr12 48207311 48207934 -96074555 + L1MB3 LINE L1 4601 5277 -869 1057 190 54 23 chr12 48207939 48208197 -96074292 + L1MB3 LINE L1 5561 5826 -357 273 96 39 19 chr12 48208198 48208250 -96074239 - L1ME1 LINE L1 -18 6148 6096 664 176 0 8 chr12 48208255 48208374 -96074115 - AluJ SINE Alu -13 299 182 839 156 0 0 chr12 48208374 48208502 -96073987 - AluJ SINE Alu -179 133 6 2096 146 11 8 chr12 48208502 48208878 -96073611 + L1MB3 LINE L1 5807 6183 0 856 151 27 43 chr12 48208905 48209043 -96073446 + L1MB8 LINE L1 5996 6132 -46 2129 113 10 3 chr12 48209043 48209334 -96073155 + AluSx SINE Alu 1 293 -19 856 151 27 43 chr12 48209334 48209381 -96073108 + L1MB8 LINE L1 6132 6178 0 2447 92 0 0 chr12 48209401 48209707 -96072782 + AluSc SINE Alu 1 306 -3 2330 63 0 7 chr12 48209732 48210019 -96072470 + AluY SINE Alu 1 285 -26 210 128 0 0 chr12 48210019 48210058 -96072431 + (TA)n Simple_repeat Simple_repeat 2 40 0 320 169 13 52 chr12 48210070 48210147 -96072342 + L1MCa LINE L1 1995 2068 -4358 366 285 111 43 chr12 48210177 48210384 -96072105 - HAL1 LINE L1 -83 2424 2204 2073 147 0 0 chr12 48210458 48210770 -96071719 - AluSx SINE Alu 0 312 1 365 315 51 60 chr12 48210801 48211036 -96071453 - HAL1 LINE L1 -462 2045 1813 1300 211 125 41 chr12 48211117 48211568 -96070921 - HAL1 LINE L1 -847 1660 1065 2460 80 0 0 chr12 48211568 48211879 -96070610 - AluY SINE Alu 0 311 1 1300 211 125 41 chr12 48211879 48211983 -96070506 - HAL1 LINE L1 -1442 1065 971 1628 151 0 60 chr12 48212088 48212386 -96070103 - AluJo SINE Alu -31 281 2 1995 69 0 47 chr12 48212945 48213220 -96069269 - AluSg SINE Alu -16 294 33 22 88 0 0 chr12 48213290 48213347 -96069142 + AT_rich Low_complexity Low_complexity 1 57 0 1468 226 162 40 chr12 48213347 48213952 -96068537 - L1ME3A LINE L1 -50 6120 5442 26 30 0 0 chr12 48214260 48214293 -96068196 + AT_rich Low_complexity Low_complexity 1 33 0 2558 69 0 0 chr12 48214820 48215124 -96067365 + AluSc SINE Alu 1 304 -5 203 184 0 0 chr12 48215670 48215708 -96066781 + A-rich Low_complexity Low_complexity 1 38 0 297 75 0 0 chr12 48216333 48216373 -96066116 + (T)n Simple_repeat Simple_repeat 1 40 0 507 216 109 69 chr12 48219103 48219432 -96063057 - L1MC4a LINE L1 -87 6034 5696 441 260 121 13 chr12 48219438 48219611 -96062878 - MIR SINE MIR -34 228 32 1837 163 0 31 chr12 48220300 48220619 -96061870 - AluSx SINE Alu -3 309 1 1649 211 3 3 chr12 48220684 48220987 -96061502 + AluJb SINE Alu 1 303 -9 839 117 8 8 chr12 48221630 48221750 -96060739 - FLAM_C SINE Alu -23 120 1 321 242 99 39 chr12 48222039 48222085 -96060404 - L1ME3A LINE L1 -15 6155 6113 828 165 0 0 chr12 48222085 48222218 -96060271 - FLAM_A SINE Alu 0 133 1 321 242 99 39 chr12 48222218 48222353 -96060136 - L1ME3A LINE L1 -57 6113 5963 535 234 227 29 chr12 48222420 48222698 -96059791 - L1ME3A LINE L1 -202 5960 5628 21 0 0 0 chr12 48223065 48223086 -96059403 + AT_rich Low_complexity Low_complexity 1 21 0 325 296 61 0 chr12 48223280 48223395 -96059094 + MIR SINE MIR 121 242 -20 1761 169 28 0 chr12 48223870 48224154 -96058335 + AluJb SINE Alu 1 292 -20 507 177 122 61 chr12 48224237 48224384 -96058105 - MER5B DNA MER1_type -14 164 9 292 214 11 67 chr12 48225326 48225415 -96057074 - L1ME3A LINE L1 -518 5603 5520 2306 87 3 10 chr12 48225503 48225801 -96056688 - AluSp SINE Alu -17 296 1 1744 174 10 0 chr12 48226591 48226889 -96055600 + AluJo SINE Alu 1 301 -11 396 298 181 12 chr12 48227048 48227219 -96055270 + MIR SINE MIR 47 246 -16 2179 119 0 3 chr12 48227368 48227662 -96054827 + AluJb SINE Alu 13 305 -7 244 250 59 0 chr12 48227686 48227754 -96054735 + L1MC/D LINE L1 5689 5760 -2048 1712 181 0 3 chr12 48227920 48228207 -96054282 - AluJo SINE Alu -20 292 7 2224 73 18 0 chr12 48228485 48228771 -96053718 + AluY SINE Alu 1 291 -20 2049 119 34 0 chr12 48228844 48229138 -96053351 + AluSx SINE Alu 1 304 -8 2427 73 3 0 chr12 48231390 48231691 -96050798 - AluSq SINE Alu -11 302 1 29 0 0 0 chr12 48234069 48234098 -96048391 + AT_rich Low_complexity Low_complexity 1 29 0 1070 138 6 0 chr12 48234098 48234258 -96048231 - AluSg/x SINE Alu -18 294 134 2171 99 27 0 chr12 48234258 48234550 -96047939 - AluSg SINE Alu -10 300 1 2161 86 21 7 chr12 48235680 48235970 -96046519 + AluSq SINE Alu 1 294 -19 30 27 0 0 chr12 48239270 48239307 -96043182 + AT_rich Low_complexity Low_complexity 1 37 0 2042 123 0 39 chr12 48239558 48239867 -96042622 - AluJb SINE Alu -15 297 1 21 0 0 0 chr12 48239940 48239961 -96042528 + AT_rich Low_complexity Low_complexity 1 21 0 810 169 38 16 chr12 48240096 48240280 -96042209 - L1MA8 LINE L1 -3 6288 6101 917 151 164 9 chr12 48240280 48240499 -96041990 - Tigger2 DNA MER2_type -2 2716 2464 1562 155 41 4 chr12 48240555 48240826 -96041663 - Tigger2 DNA MER2_type -1961 757 477 667 147 0 0 chr12 48240851 48240960 -96041529 - AluJb SINE Alu 0 312 204 2191 149 46 14 chr12 48240960 48241397 -96041092 - Tigger2 DNA MER2_type -2267 451 1 1367 155 78 14 chr12 48241397 48241693 -96040796 - L1MA7 LINE L1 -195 6096 5782 23 0 0 0 chr12 48241869 48241892 -96040597 + AT_rich Low_complexity Low_complexity 1 23 0 483 219 55 52 chr12 48242380 48242610 -96039879 - L1ME2 LINE L1 -9 6157 5924 528 199 116 39 chr12 48246357 48246538 -96035951 - HAL1 LINE L1 0 2507 2313 2288 112 0 0 chr12 48246548 48246851 -96035638 - AluSx SINE Alu -9 303 1 1758 272 173 63 chr12 48246866 48248617 -96033872 - HAL1 LINE L1 -448 2059 91 2146 103 4 0 chr12 48248617 48248931 -96033558 + AluSq SINE Alu 1 315 0 1758 272 173 63 chr12 48248931 48249030 -96033459 - HAL1 LINE L1 -2416 91 4 191 343 128 0 chr12 48249502 48249604 -96032885 - MIR SINE MIR -62 146 32 2162 101 3 52 chr12 48249823 48250149 -96032340 + AluSq SINE Alu 1 310 -3 257 345 23 2 chr12 48250879 48250977 -96031512 + MIR SINE MIR 16 113 -95 1288 156 5 9 chr12 48251209 48251421 -96031068 - AluJb SINE Alu -9 303 93 1447 129 98 43 chr12 48251681 48252007 -96030482 - L1MA9 LINE L1 -6 6306 5963 702 230 32 16 chr12 48252007 48252194 -96030295 + L2 LINE L2 2346 2535 -779 2494 125 76 15 chr12 48252199 48252668 -96029821 + Tigger2 DNA MER2_type 1 2715 -3 1037 266 143 51 chr12 48252671 48253378 -96029111 + L2 LINE L2 2534 3313 0 956 194 0 0 chr12 48253627 48253782 -96028707 + Tigger7 DNA MER2_type 2 156 -577 1465 133 61 11 chr12 48253791 48254055 -96028434 + Tigger7 DNA MER2_type 2309 2585 -2 1641 169 30 10 chr12 48255946 48256242 -96026247 - AluJb SINE Alu -10 302 1 841 127 8 0 chr12 48256273 48256399 -96026090 - FLAM_C SINE Alu -5 128 2 375 241 105 8 chr12 48257990 48258095 -96024394 + MER5C DNA MER1_type 1 123 -201 1855 179 0 0 chr12 48258095 48258386 -96024103 - AluJo SINE Alu -21 291 1 375 241 105 8 chr12 48258386 48258413 -96024076 + MER5C DNA MER1_type 123 146 -178 662 157 0 101 chr12 48258483 48258642 -96023847 - FLAM_C SINE Alu 0 143 1 209 379 97 0 chr12 48259213 48259337 -96023152 - L2 LINE L2 -194 3078 2943 1165 189 58 26 chr12 48259629 48259942 -96022547 + MER33 DNA MER1_type 1 323 -1 368 322 124 37 chr12 48260033 48260433 -96022056 - L2 LINE L2 -833 2481 2039 303 49 0 0 chr12 48260433 48260474 -96022015 + (CATA)n Simple_repeat Simple_repeat 1 41 0 368 322 124 37 chr12 48260474 48260508 -96021981 - L2 LINE L2 -1275 2039 2009 24 67 0 0 chr12 48262185 48262230 -96020259 + AT_rich Low_complexity Low_complexity 1 45 0 327 178 206 0 chr12 48262274 48262347 -96020142 - L2 LINE L2 -1 3271 3184 345 305 6 6 chr12 48262791 48262958 -96019531 - L1ME LINE L1 -731 5431 5265 858 212 0 0 chr12 48263807 48263953 -96018536 + FRAM SINE Alu 1 146 -30 398 194 65 40 chr12 48264140 48264264 -96018225 + MIR SINE MIR 65 191 -71 1612 180 43 17 chr12 48264633 48264933 -96017556 - AluJb SINE Alu -4 308 1 1548 173 6 55 chr12 48264979 48265291 -96017198 - AluJo SINE Alu -12 300 4 1765 132 46 11 chr12 48265578 48265859 -96016630 - AluJb SINE Alu -21 291 1 1879 152 0 39 chr12 48268304 48268614 -96013875 - AluJb SINE Alu -14 298 1 740 148 16 0 chr12 48269569 48269697 -96012792 + AluSg/x SINE Alu 173 302 -10 319 290 20 0 chr12 48270499 48270599 -96011890 + L1ME LINE L1 5577 5678 -484 298 298 40 63 chr12 48271551 48271726 -96010763 + MIR SINE MIR 36 206 -56 665 285 65 24 chr12 48272534 48272943 -96009546 - L1MC4a LINE L1 -1746 6062 5528 348 278 172 18 chr12 48273199 48273368 -96009121 + L1MEd LINE L1 858 1052 -5364 270 262 165 28 chr12 48273420 48273668 -96008821 + L1MEd LINE L1 1260 1541 -4875 318 272 90 46 chr12 48273674 48274032 -96008457 + L1MEd LINE L1 1402 2087 -4340 2443 61 0 0 chr12 48274795 48275088 -96007401 + AluY SINE Alu 1 293 -18 203 246 15 0 chr12 48275328 48275393 -96007096 + (TG)n Simple_repeat Simple_repeat 2 67 0 856 141 0 0 chr12 48275895 48276023 -96006466 - FLAM_C SINE Alu -5 128 1 622 274 137 64 chr12 48276245 48276669 -96005820 + L3 LINE CR1 804 1258 -319 260 281 49 37 chr12 48276670 48276752 -96005737 + L3 LINE CR1 1410 1492 -85 946 294 72 42 chr12 48276808 48277209 -96005280 - L2 LINE L2 -71 3242 2830 28 0 0 0 chr12 48277488 48277516 -96004973 + AT_rich Low_complexity Low_complexity 1 28 0 739 165 25 8 chr12 48277519 48277640 -96004849 + FLAM_A SINE Alu 4 126 -7 2093 118 0 3 chr12 48277770 48278066 -96004423 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr12 48278934 48278956 -96003533 + AT_rich Low_complexity Low_complexity 1 22 0 1932 104 54 14 chr12 48279069 48279366 -96003123 + AluSx SINE Alu 2 310 -2 347 198 73 10 chr12 48279424 48279520 -96002969 + MER3 DNA MER1_type 86 187 -22 21 0 0 0 chr12 48279526 48279547 -96002942 + AT_rich Low_complexity Low_complexity 1 21 0 206 344 0 16 chr12 48279887 48279951 -96002538 + MIR SINE MIR 10 72 -190 1675 171 11 28 chr12 48280164 48280312 -96002177 - AluJo SINE Alu -30 282 140 2408 62 3 0 chr12 48280312 48280603 -96001886 - AluSg1 SINE Alu -17 292 1 1675 171 11 28 chr12 48280603 48280741 -96001748 - AluJo SINE Alu -172 140 1 22 0 0 0 chr12 48281639 48281661 -96000828 + AT_rich Low_complexity Low_complexity 1 22 0 394 326 47 63 chr12 48281725 48282026 -96000463 + L1ME1 LINE L1 9 304 -6236 1510 183 9 31 chr12 48282709 48283026 -95999463 + AluJo SINE Alu 1 310 -2 2248 218 84 82 chr12 48283058 48283258 -95999231 + L1ME1 LINE L1 1009 1207 -5333 1059 94 0 0 chr12 48283258 48283438 -95999051 + (TA)n Simple_repeat Simple_repeat 1 180 0 2248 218 84 82 chr12 48283438 48284407 -95998082 + L1ME1 LINE L1 1207 2180 -4360 10446 125 45 13 chr12 48284414 48286129 -95996360 - Tigger1 DNA MER2_type 0 2418 649 2051 174 65 3 chr12 48286127 48286512 -95995977 - Tigger1 DNA MER2_type -2008 410 2 * 429 234 71 7 chr12 48286531 48286672 -95995817 + L1ME1 LINE L1 2212 2361 -4179 1440 128 76 0 chr12 48286709 48286958 -95995531 + Tigger7 DNA MER2_type 2319 2586 -1 232 116 128 47 chr12 48286995 48287081 -95995408 + L1ME1 LINE L1 2402 2494 -4046 * 684 200 158 16 chr12 48287067 48287357 -95995132 + L1ME1 LINE L1 3329 3644 -2896 899 226 42 4 chr12 48287362 48287601 -95994888 + L1ME1 LINE L1 3840 4087 -2453 1028 250 103 23 chr12 48287632 48287980 -95994509 + L1ME1 LINE L1 6164 6539 -21 722 243 28 11 chr12 48289263 48289290 -95993199 - MLT1A1 LTR MaLR -2 363 338 208 28 83 0 chr12 48289290 48289326 -95993163 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 722 243 28 11 chr12 48289326 48289475 -95993014 - MLT1A1 LTR MaLR -27 338 184 23 0 0 0 chr12 48290031 48290054 -95992435 + AT_rich Low_complexity Low_complexity 1 23 0 248 282 179 62 chr12 48290134 48290329 -95992160 - MIR SINE MIR -4 258 41 292 262 24 119 chr12 48290532 48290746 -95991743 - MIR SINE MIR -21 241 4 894 192 17 6 chr12 48291772 48291944 -95990545 + AluJo SINE Alu 109 282 -30 448 216 99 63 chr12 48291986 48292208 -95990281 + L1M4 LINE L1 2137 2366 -3780 2084 141 7 0 chr12 48292575 48292873 -95989616 + AluSx SINE Alu 1 300 -12 196 323 62 21 chr12 48293787 48293883 -95988606 - MIR SINE MIR -128 134 35 387 0 0 0 chr12 48293893 48293936 -95988553 + (CA)n Simple_repeat Simple_repeat 2 44 0 1108 207 42 137 chr12 48294323 48294753 -95987736 - L1MC4 LINE L1 -413 7629 7241 1064 189 66 4 chr12 48294755 48294846 -95987643 - L1MC4 LINE L1 -1034 7008 6924 2163 130 0 0 chr12 48294846 48295145 -95987344 - AluSx SINE Alu -13 299 1 1064 189 66 4 chr12 48295145 48295280 -95987209 - L1MC4 LINE L1 -1118 6924 6768 393 243 101 7 chr12 48295297 48295445 -95987044 - L1MC4 LINE L1 -1422 6620 6459 460 320 35 25 chr12 48295673 48295870 -95986619 + MIR SINE MIR 60 258 -4 833 318 164 27 chr12 48295977 48296679 -95985810 + L2 LINE L2 1884 2681 -633 275 299 130 29 chr12 48296663 48296774 -95985715 - L3 LINE CR1 -226 1351 1253 * 2179 114 29 14 chr12 48296774 48297124 -95985365 + THE1A LTR MaLR 1 355 0 275 299 130 29 chr12 48297124 48297219 -95985270 - L3 LINE CR1 -324 1253 1124 677 142 9 0 chr12 48297229 48297335 -95985154 + AluJo/FLAM SINE Alu 1 107 -205 342 183 28 0 chr12 48297335 48297406 -95985083 + AluJ/FRAM SINE Alu 229 301 -1 360 295 105 24 chr12 48297577 48297787 -95984702 - L2 LINE L2 -44 3269 3043 646 225 148 13 chr12 48297791 48298027 -95984462 - L2 LINE L2 -428 2886 2619 260 230 0 40 chr12 48300725 48300799 -95981690 + C-rich Low_complexity Low_complexity 4 74 0 1874 132 10 7 chr12 48301431 48301727 -95980762 + AluSx SINE Alu 1 297 -15 41 36 0 0 chr12 48302793 48302848 -95979641 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr12 48303233 48303261 -95979228 + AT_rich Low_complexity Low_complexity 1 28 0 2331 98 3 22 chr12 48303641 48303959 -95978530 + AluSx SINE Alu 1 312 0 831 169 169 28 chr12 48304115 48304293 -95978196 + AluJb SINE Alu 88 290 -22 919 168 7 0 chr12 48304399 48304542 -95977947 + AluJb SINE Alu 137 280 -32 234 257 5 32 chr12 48304765 48304882 -95977607 + A-rich Low_complexity Low_complexity 1 182 0 2160 210 60 6 chr12 48304884 48305350 -95977139 + MLT2B2 LTR ERVL 1 491 -24 955 23 78 39 chr12 48306119 48306142 -95976347 + MER85 DNA T2_type 1 22 -117 2415 51 7 0 chr12 48306142 48306436 -95976053 - AluY SINE Alu -15 296 1 955 23 78 39 chr12 48306436 48306540 -95975949 + MER85 DNA T2_type 22 133 -6 370 271 19 104 chr12 48307268 48307326 -95975163 - L1MC/D LINE L1 -1984 5824 5763 1384 168 71 39 chr12 48307326 48307606 -95974883 - AluJo SINE Alu -13 289 1 370 271 19 104 chr12 48307606 48307816 -95974673 - L1MC/D LINE L1 -2045 5763 5579 584 323 224 18 chr12 48307851 48308303 -95974186 + MLT1K LTR MaLR 44 588 0 390 302 57 38 chr12 48308304 48308569 -95973920 - L1MC/D LINE L1 -2226 5582 5313 2086 103 0 21 chr12 48308762 48309084 -95973405 - AluSx SINE Alu 0 316 1 220 267 336 0 chr12 48309125 48309241 -95973248 - L2 LINE L2 -22 3291 3137 2295 153 21 18 chr12 48309256 48309643 -95972846 + MLT1B LTR MaLR 1 388 -2 192 77 0 0 chr12 48309731 48309757 -95972732 + (CCCCCT)n Simple_repeat Simple_repeat 3 28 0 8919 81 15 109 chr12 48309757 48311285 -95971204 + SVA Other Other 1 1384 -2 238 313 12 25 chr12 48311302 48311382 -95971107 + MLT1L LTR MaLR 122 200 -415 302 331 105 0 chr12 48311582 48311715 -95970774 + MLT1L LTR MaLR 421 567 -48 823 254 38 0 chr12 48311779 48311964 -95970525 - LTR16A LTR ERVL 0 450 259 267 237 50 79 chr12 48312011 48312150 -95970339 - LTR16A LTR ERVL -306 144 10 410 278 82 75 chr12 48312243 48312370 -95970119 - ERVL LTR ERVL -97 5019 4894 2021 184 49 0 chr12 48312370 48312718 -95969771 + MLT1A1 LTR MaLR 1 365 0 410 278 82 75 chr12 48312718 48313076 -95969413 - ERVL LTR ERVL -222 4894 4505 1495 288 32 12 chr12 48313414 48314054 -95968435 - ERVL LTR ERVL -1068 4417 3765 208 243 0 54 chr12 48314275 48314349 -95968140 + CT-rich Low_complexity Low_complexity 4 73 0 323 234 43 43 chr12 48314853 48314947 -95967542 - ERVL LTR ERVL -2339 3315 3222 1183 204 100 0 chr12 48315142 48315313 -95967176 - AluJo SINE Alu -1 311 159 190 0 67 0 chr12 48315313 48315343 -95967146 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 1183 204 100 0 chr12 48315343 48315450 -95967039 - AluJo SINE Alu -153 159 5 480 177 74 26 chr12 48315538 48315737 -95966752 + MER20B DNA MER1_type 543 783 0 308 152 61 61 chr12 48315865 48315931 -95966558 - L1ME LINE L1 -562 5559 5494 1374 196 62 98 chr12 48315938 48316386 -95966103 + MSTB1 LTR MaLR 1 432 0 6606 182 28 52 chr12 48316579 48316705 -95965784 - L1MB8 LINE L1 -5 7592 7464 261 0 0 0 chr12 48316705 48316734 -95965755 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1759 171 3 0 chr12 48316736 48317023 -95965466 - AluJb SINE Alu -24 288 1 6606 182 28 52 chr12 48317023 48319071 -95963418 - L1MB8 LINE L1 -134 7463 5366 1626 165 0 63 chr12 48319071 48319387 -95963102 - AluJb SINE Alu -12 300 5 244 214 0 0 chr12 48319387 48319429 -95963060 + Alu SINE Alu 19 60 -242 6606 182 28 52 chr12 48319429 48319708 -95962781 - L1MB8 LINE L1 -2229 5368 5166 1545 172 40 26 chr12 48319954 48320257 -95962232 + AluJo SINE Alu 1 307 -5 1918 111 60 88 chr12 48320987 48321158 -95961331 + THE1C LTR MaLR 1 175 -200 2528 49 3 3 chr12 48321158 48321462 -95961027 - AluY SINE Alu -7 304 1 1918 111 60 88 chr12 48321462 48321676 -95960813 + THE1C LTR MaLR 175 375 0 2113 130 0 7 chr12 48321758 48322059 -95960430 - AluSx SINE Alu -13 299 1 278 290 0 0 chr12 48322455 48322524 -95959965 - MIR SINE MIR -69 139 71 909 145 0 0 chr12 48322774 48322905 -95959584 + FLAM_C SINE Alu 1 131 -12 21 0 0 0 chr12 48322907 48322928 -95959561 + AT_rich Low_complexity Low_complexity 1 21 0 2147 146 0 0 chr12 48322929 48323237 -95959252 - AluSx SINE Alu -4 308 1 3080 192 19 35 chr12 48323237 48323606 -95958883 - L1MB8 LINE L1 -3325 4240 3867 2030 147 3 0 chr12 48323606 48323906 -95958583 - AluSq SINE Alu -12 301 1 3080 192 19 35 chr12 48323906 48324581 -95957908 - L1MB8 LINE L1 -3698 3867 3213 205 159 101 0 chr12 48324584 48324653 -95957836 + (TTATA)n Simple_repeat Simple_repeat 5 80 0 2876 233 26 24 chr12 48324683 48325513 -95956976 - L1MB8 LINE L1 -4348 3217 2386 5494 163 30 23 chr12 48325527 48325856 -95956633 - L1PB2 LINE L1 -1 6150 5825 2446 82 0 0 chr12 48325856 48326160 -95956329 - AluY SINE Alu -7 304 1 5494 163 30 23 chr12 48326160 48326198 -95956291 - L1PB2 LINE L1 -326 5825 5789 774 84 0 0 chr12 48326198 48326305 -95956184 + (TA)n Simple_repeat Simple_repeat 1 107 0 5494 163 30 23 chr12 48326305 48327987 -95954502 - L1PB2 LINE L1 -362 5789 4217 2594 171 19 53 chr12 48327987 48328690 -95953799 + pTR5 LTR ERV1 743 1421 -1017 12819 148 16 64 chr12 48328821 48331353 -95951136 + L1P LINE L1 356 2766 -3380 7391 55 7 1 chr12 48331472 48332767 -95949722 + L1PA7 LINE L1 4854 6152 -2 2176 223 17 56 chr12 48333345 48333423 -95949066 + L1M4 LINE L1 4666 4745 -1421 1819 140 25 0 chr12 48333423 48333709 -95948780 - AluSx SINE Alu -19 293 1 2176 223 17 56 chr12 48333709 48334331 -95948158 + L1M4 LINE L1 4745 5336 -830 * 3864 245 98 45 chr12 48334327 48334417 -95948072 + L1M4 LINE L1 5 89 -6453 336 24 0 0 chr12 48334417 48334458 -95948031 + (TG)n Simple_repeat Simple_repeat 2 42 0 3864 245 98 45 chr12 48334458 48335247 -95947242 + L1M4 LINE L1 89 835 -5707 4113 129 8 35 chr12 48335247 48335874 -95946615 + MER4B LTR ERV1 1 610 0 3864 245 98 45 chr12 48335874 48336191 -95946298 + L1M4 LINE L1 835 1134 -5408 1448 220 17 3 chr12 48336191 48336482 -95946007 - AluJo SINE Alu -17 295 1 3864 245 98 45 chr12 48336482 48336716 -95945773 + L1M4 LINE L1 1134 1512 -5030 1264 265 51 72 chr12 48336720 48337249 -95945240 - LTR55 LTR ERV -30 518 1 796 173 100 0 chr12 48337262 48337431 -95945058 + L1M4 LINE L1 1530 1681 -5144 1923 155 59 59 chr12 48337431 48337819 -95944670 + MLT1B LTR MaLR 3 390 0 796 173 100 0 chr12 48337819 48337913 -95944576 + L1M4 LINE L1 1681 2126 -4699 2269 106 0 7 chr12 48337955 48338258 -95944231 + AluSc SINE Alu 1 301 -8 610 234 143 34 chr12 48338278 48338599 -95943890 + L1M4 LINE L1 2187 2542 -4104 13983 198 13 52 chr12 48338602 48342001 -95940488 + L1PA15-16 LINE L1 1 3531 -3318 1412 189 0 0 chr12 48342001 48342253 -95940236 + AluJb SINE Alu 55 306 0 13983 198 13 52 chr12 48342253 48342897 -95939592 + L1PA15-16 LINE L1 3531 3494 -3355 2060 125 0 3 chr12 48342897 48343186 -95939303 + AluSc SINE Alu 21 308 -1 13983 198 13 52 chr12 48343186 48344164 -95938325 + L1PA15-16 LINE L1 3493 4508 -2341 9847 116 37 42 chr12 48344280 48345915 -95936574 + HERVH LTR ERV1 3285 4910 -2803 1520 175 4 0 chr12 48345915 48346184 -95936305 + HERVH LTR ERV1 5747 6016 -1697 * 3044 105 47 75 chr12 48346177 48346506 -95935983 + HERVH LTR ERV1 7157 7465 -248 1580 143 124 75 chr12 48346506 48346933 -95935556 - LTR7 LTR ERV1 -2 448 1 3044 105 47 75 chr12 48346933 48347176 -95935313 + HERVH LTR ERV1 7465 7713 0 2421 178 8 17 chr12 48347317 48347840 -95934649 + L1PA16 LINE L1 5476 5993 -173 1066 112 22 11 chr12 48347840 48348010 -95934479 + L1MA7 LINE L1 6111 6291 0 2586 229 92 15 chr12 48348032 48349001 -95933488 + L1M4 LINE L1 2533 3582 -3062 3739 125 2 4 chr12 48349002 48349514 -95932975 - MER9 LTR ERVK 0 511 1 8277 21 0 0 chr12 48349638 48350688 -95931801 + L1PA3 LINE L1 5105 6152 -3 22 0 0 0 chr12 48350688 48350710 -95931779 + AT_rich Low_complexity Low_complexity 1 22 0 1835 143 27 0 chr12 48350823 48351123 -95931366 - L1P3 LINE L1 -6150 311 4 21 0 0 0 chr12 48351382 48351403 -95931086 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 48352341 48352364 -95930125 + AT_rich Low_complexity Low_complexity 1 23 0 2664 178 40 29 chr12 48352555 48353101 -95929388 + L1MCa LINE L1 410 961 -5465 3116 261 73 37 chr12 48353106 48354575 -95927914 + L1M3de LINE L1 978 2137 -4516 6306 154 14 36 chr12 48354583 48355244 -95927245 + L1M3f LINE L1 67 741 -4587 2417 88 0 7 chr12 48355244 48355551 -95926938 + AluY SINE Alu 1 305 -6 6306 154 14 36 chr12 48355551 48355798 -95926691 + L1M3f LINE L1 741 992 -4336 1687 174 0 21 chr12 48355798 48356085 -95926404 + AluJo SINE Alu 2 282 -30 360 0 0 0 chr12 48356088 48356128 -95926361 + (CA)n Simple_repeat Simple_repeat 2 41 0 6306 154 14 36 chr12 48356128 48356336 -95926153 + L1M3f LINE L1 994 1164 -4164 7979 219 38 26 chr12 48356351 48358598 -95923891 + L1PBa LINE L1 3 2222 -4640 369 0 0 0 chr12 48358598 48358639 -95923850 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 7979 219 38 26 chr12 48358639 48359156 -95923333 + L1PBa LINE L1 2222 2731 -4131 2027 155 0 7 chr12 48359156 48359453 -95923036 + AluJb SINE Alu 1 295 -17 7979 219 38 26 chr12 48359453 48359846 -95922643 + L1PBa LINE L1 2731 3118 -3744 198 0 0 0 chr12 48359846 48359868 -95922621 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7979 219 38 26 chr12 48359868 48362457 -95920032 + L1PBa LINE L1 3118 4936 -1926 2606 88 121 193 chr12 48362469 48363271 -95919218 - pTR5 LTR ERV1 -143 2295 1552 6297 123 43 48 chr12 48363411 48363750 -95918739 - HERVH LTR ERV1 -4801 2912 2573 2523 36 7 7 chr12 48363750 48364056 -95918433 + AluY SINE Alu 1 306 -5 6297 123 43 48 chr12 48364056 48364958 -95917531 - HERVH LTR ERV1 -5140 2573 1677 605 173 65 0 chr12 48364959 48365098 -95917391 - L1P3 LINE L1 -5994 467 320 861 80 7 43 chr12 48365216 48365354 -95917135 + AluSg/x SINE Alu 175 307 -3 2192 188 30 60 chr12 48365359 48365491 -95916998 - L1 LINE L1 -1550 4596 4462 2111 88 13 35 chr12 48365491 48365809 -95916680 - AluY SINE Alu 0 311 1 2192 188 30 60 chr12 48365809 48366276 -95916213 - L1 LINE L1 -1684 4462 4015 6255 199 61 19 chr12 48366376 48368892 -95913597 + L1MB5 LINE L1 3544 6166 -8 * 10592 171 54 26 chr12 48368886 48368958 -95913531 + L1MC3 LINE L1 5310 5378 -2407 2032 163 17 6 chr12 48368958 48369320 -95913169 - MER47A DNA MER2_type 0 366 1 10592 171 54 26 chr12 48369320 48371017 -95911472 + L1MC3 LINE L1 5378 7026 -759 2038 115 45 0 chr12 48371017 48371305 -95911184 - AluSx SINE Alu -11 301 1 10592 171 54 26 chr12 48371305 48371675 -95910814 + L1MC3 LINE L1 7026 7384 -401 717 161 0 8 chr12 48371675 48371813 -95910676 + FLAM_C SINE Alu 2 138 0 2418 71 0 19 chr12 48371821 48372132 -95910357 - AluY SINE Alu -5 306 2 10592 171 54 26 chr12 48372132 48372388 -95910101 + L1MC3 LINE L1 7390 7785 0 250 359 21 7 chr12 48372665 48372807 -95909682 + L2 LINE L2 2817 2960 -353 301 253 22 11 chr12 48372807 48372898 -95909591 + CT-rich Low_complexity Low_complexity 1 92 0 418 240 0 0 chr12 48373024 48373128 -95909361 + MER53 DNA DNA 1 104 -85 2758 175 23 9 chr12 48373135 48373666 -95908823 + Tigger1 DNA MER2_type 1 538 -1880 430 248 319 34 chr12 48373670 48373936 -95908553 + L2 LINE L2 1565 1906 -1408 1653 162 96 3 chr12 48373940 48374273 -95908216 - MSTA LTR MaLR -64 364 1 1025 271 19 38 chr12 48374273 48374587 -95907902 + L2 LINE L2 2622 2929 -385 475 167 28 155 chr12 48374643 48374894 -95907595 - L1MC5 LINE L1 -897 7064 6846 374 312 82 43 chr12 48374965 48375109 -95907380 + MIR SINE MIR 23 181 -81 1850 144 23 59 chr12 48375109 48375498 -95906991 + THE1C LTR MaLR 1 375 0 374 312 82 43 chr12 48375498 48375584 -95906905 + MIR SINE MIR 181 262 0 288 294 64 0 chr12 48375676 48375785 -95906704 - MIR SINE MIR 0 262 147 386 319 80 0 chr12 48375834 48375972 -95906517 - MIR SINE MIR -108 154 6 477 193 0 11 chr12 48376793 48376881 -95905608 - AluS SINE Alu -226 87 1 1512 248 6 0 chr12 48378055 48378390 -95904099 - MER58B DNA MER1_type -4 337 1 181 280 0 0 chr12 48379518 48379568 -95902921 - L2 LINE L2 -69 3244 3195 2136 115 0 0 chr12 48379899 48380185 -95902304 + AluSc SINE Alu 3 288 -21 336 314 121 0 chr12 48381350 48381490 -95900999 + MIR SINE MIR 80 236 -26 2165 104 37 0 chr12 48381935 48382233 -95900256 - AluSx SINE Alu -3 309 1 433 260 233 0 chr12 48383487 48383637 -95898852 - MIR3 SINE MIR -14 194 10 695 242 115 6 chr12 48383701 48383883 -95898606 + MIR SINE MIR 15 216 -46 342 300 0 0 chr12 48384170 48384260 -95898229 + L1MC4 LINE L1 6614 6703 -1339 1499 161 45 0 chr12 48384539 48384825 -95897664 - MSTA LTR MaLR 0 428 130 5693 171 23 3 chr12 48384832 48385870 -95896619 - MSTA-int LTR MaLR -592 1059 1 2012 137 153 3 chr12 48385870 48386242 -95896247 - MSTA LTR MaLR 0 428 1 263 284 0 0 chr12 48386303 48386370 -95896119 - MER63A DNA MER1_type 0 210 144 383 224 48 72 chr12 48386615 48386740 -95895749 - MER63A DNA MER1_type 0 123 2 328 200 0 0 chr12 48386754 48386824 -95895665 - L1MC5 LINE L1 -172 7789 7720 744 213 7 26 chr12 48386876 48387031 -95895458 + AluJb SINE Alu 137 288 -24 1915 194 89 99 chr12 48387100 48387397 -95895092 - L1MC5 LINE L1 -387 7574 7276 198 0 0 0 chr12 48387397 48387419 -95895070 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1915 194 89 99 chr12 48387419 48388013 -95894476 - L1MC5 LINE L1 -685 7276 6692 386 249 170 106 chr12 48388079 48388580 -95893909 - L1MC4a LINE L1 -1215 6593 6061 313 253 20 0 chr12 48388709 48388808 -95893681 - L1MC4a LINE L1 -2290 5518 5418 387 313 61 25 chr12 48388850 48389048 -95893441 - L1MC4a LINE L1 -819 5327 5123 285 305 113 21 chr12 48389839 48389980 -95892509 - MIR SINE MIR -76 186 33 1469 150 77 22 chr12 48390035 48390308 -95892181 - AluJo SINE Alu -17 295 8 2098 199 90 36 chr12 48390428 48391016 -95891473 - LTR29 LTR ERV1 -2 620 1 550 184 0 0 chr12 48391118 48391205 -95891284 - AluJ/FLAM SINE Alu -225 87 1 1852 140 128 15 chr12 48391294 48391629 -95890860 - MER83C LTR ERV1 0 373 1 6482 175 38 40 chr12 48391633 48394290 -95888199 - MER83C-int LTR ERV1 -6 4863 12 1641 129 214 7 chr12 48394290 48394599 -95887890 - MER83C LTR ERV1 0 373 1 337 291 36 67 chr12 48395115 48395338 -95887151 + LTR67 LTR ERVL 96 311 -246 1264 47 18 0 chr12 48395911 48396082 -95886407 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 677 199 7 0 chr12 48396089 48396240 -95886249 + CT-rich Low_complexity Low_complexity 4 155 0 772 256 80 68 chr12 48396244 48396745 -95885744 + LTR38 LTR ERV1 39 545 -11 732 281 48 51 chr12 48396822 48397153 -95885336 + LTR38-int LTR ERV1 115 444 -1342 314 232 81 0 chr12 48397334 48397433 -95885056 + LTR38-int LTR ERV1 1547 1653 -2632 2653 334 51 41 chr12 48397477 48400070 -95882419 + LTR38-int LTR ERV1 925 4234 -3522 1810 306 51 59 chr12 48400358 48402061 -95880428 + LTR38-int LTR ERV1 4641 6374 -748 6238 80 12 10 chr12 48402061 48403151 -95879338 + L1PA10 LINE L1 5076 6167 0 11503 179 58 18 chr12 48403151 48405118 -95877371 + L1PB1 LINE L1 2767 4654 -2213 1772 83 0 4 chr12 48405118 48405346 -95877143 + AluY SINE Alu 82 308 -3 11503 179 58 18 chr12 48405346 48407299 -95875190 + L1PB1 LINE L1 4654 6859 -8 406 389 9 9 chr12 48407301 48407530 -95874959 + LTR38-int LTR ERV1 6645 6873 -249 1912 215 35 73 chr12 48407784 48408360 -95874129 - MLT2B3 LTR ERVL 0 554 1 628 259 85 41 chr12 48408418 48408758 -95873731 + LTR38 LTR ERV1 89 443 -113 4049 115 35 46 chr12 48408769 48409550 -95872939 + LTR1 LTR ERV1 12 783 -2 436 208 31 0 chr12 48409565 48409661 -95872828 + LTR36 LTR ERV1 503 601 -10 2540 53 0 3 chr12 48409679 48409981 -95872508 - AluY SINE Alu -10 301 1 27 49 0 0 chr12 48410555 48410596 -95871893 + AT_rich Low_complexity Low_complexity 1 41 0 740 281 142 35 chr12 48412163 48412252 -95870237 + L2 LINE L2 2909 2987 -326 2077 144 0 0 chr12 48412252 48412564 -95869925 - AluSx SINE Alu 0 312 1 740 281 142 35 chr12 48412564 48412840 -95869649 + L2 LINE L2 2987 3313 0 242 415 15 15 chr12 48412851 48412981 -95869508 - L2 LINE L2 -2 3270 3141 1668 191 3 3 chr12 48413044 48413343 -95869146 - AluJo SINE Alu -13 299 1 628 108 0 0 chr12 48413367 48413460 -95869029 - L1P LINE L1 -4297 1849 1757 1932 214 18 23 chr12 48413467 48413906 -95868583 - MLT2B3 LTR ERVL -117 437 1 308 303 62 29 chr12 48414091 48414299 -95868190 - L1MDa LINE L1 -4465 1664 1450 252 273 0 86 chr12 48414299 48414354 -95868135 - HAL1b LINE L1 -859 489 450 418 295 9 9 chr12 48414354 48414466 -95868023 - MER81 DNA DNA 0 114 3 252 273 0 86 chr12 48414466 48414538 -95867951 - HAL1b LINE L1 -898 450 373 1114 273 86 86 chr12 48414590 48415210 -95867279 - HAL1 LINE L1 -1884 623 4 429 283 21 69 chr12 48415210 48415443 -95867046 - L1MDa LINE L1 -5175 944 723 239 317 8 58 chr12 48415535 48415655 -95866834 - L1MDa LINE L1 -5543 576 463 610 302 43 32 chr12 48415687 48415965 -95866524 - L1MDa LINE L1 -5737 382 102 12627 209 31 35 chr12 48416163 48420427 -95862062 + L1PB3 LINE L1 3 4280 -2590 263 28 28 0 chr12 48420427 48420463 -95862026 + (TA)n Simple_repeat Simple_repeat 1 37 0 12627 209 31 35 chr12 48420463 48423801 -95858688 + L1PB3 LINE L1 4280 6500 -370 762 93 0 0 chr12 48423801 48423909 -95858580 + (TA)n Simple_repeat Simple_repeat 1 108 0 12627 209 31 35 chr12 48423909 48424279 -95858210 + L1PB3 LINE L1 6500 6870 0 1182 207 33 88 chr12 48424828 48425191 -95857298 - MLT1D LTR MaLR 0 505 163 2558 200 60 122 chr12 48425193 48426039 -95856450 + MER21B LTR ERV1 1 794 -69 629 210 31 72 chr12 48426068 48426263 -95856226 - MLT1D LTR MaLR -439 187 1 239 326 80 38 chr12 48426277 48426541 -95855948 - L2 LINE L2 -962 2352 2078 2066 76 0 4 chr12 48426595 48426881 -95855608 - AluSq SINE Alu 0 320 36 1704 155 3 56 chr12 48426889 48427193 -95855296 - AluJb SINE Alu -24 288 1 861 206 0 0 chr12 48427348 48427513 -95854976 + FRAM SINE Alu 1 165 -1 1064 153 12 0 chr12 48427758 48427976 -95854513 + AluSq SINE Alu 140 359 0 246 333 0 0 chr12 48429752 48429824 -95852665 - MIR SINE MIR -71 191 120 191 343 51 81 chr12 48430162 48430494 -95851995 + L2 LINE L2 2437 2758 -556 722 257 105 0 chr12 48430527 48430737 -95851752 - MIR SINE MIR -2 260 29 278 368 9 0 chr12 48431741 48431855 -95850634 - L2 LINE L2 -2 3311 3197 594 134 55 0 chr12 48432269 48432433 -95850056 + GA-rich Low_complexity Low_complexity 1 173 0 319 302 60 40 chr12 48433066 48433215 -95849274 - L2 LINE L2 -1 3312 3161 651 218 163 14 chr12 48433720 48434009 -95848480 - HAL1b LINE L1 -2 1346 1015 23 54 0 0 chr12 48434272 48434309 -95848180 + AT_rich Low_complexity Low_complexity 1 37 0 356 335 180 0 chr12 48434320 48434487 -95848002 - MIR SINE MIR -34 228 32 1011 214 47 119 chr12 48434557 48434688 -95847801 - HAL1b LINE L1 -701 647 508 1415 179 95 0 chr12 48434688 48434951 -95847538 - AluJo SINE Alu -24 288 1 1011 214 47 119 chr12 48434951 48434968 -95847521 - HAL1b LINE L1 -840 508 491 4068 36 27 11 chr12 48434968 48435491 -95846998 - L1PA8 LINE L1 -1 6171 5641 1011 214 47 119 chr12 48435491 48435939 -95846550 - HAL1b LINE L1 -857 491 93 485 280 47 3 chr12 48436684 48436841 -95845648 + MIR SINE MIR 3 173 -61 1358 108 38 0 chr12 48436842 48437028 -95845461 - AluSg/x SINE Alu -12 300 108 405 284 0 0 chr12 48437031 48437126 -95845363 + MIR SINE MIR 168 262 0 3541 180 42 44 chr12 48437281 48438121 -95844368 + L1MD2 LINE L1 5520 6357 -2 1141 87 0 7 chr12 48438480 48438630 -95843859 - THE1B LTR MaLR 0 364 216 584 317 36 27 chr12 48439453 48439674 -95842815 - MIR SINE MIR -37 225 3 569 255 90 79 chr12 48439674 48439952 -95842537 + L2 LINE L2 3030 3310 -3 361 276 49 8 chr12 48440370 48440493 -95841996 - MIR SINE MIR -49 213 86 2030 165 0 14 chr12 48440574 48440925 -95841564 + MER7A DNA MER2_type 2 345 -1 1876 154 78 47 chr12 48441900 48442284 -95840205 + MSTD LTR MaLR 1 396 0 614 300 29 38 chr12 48442343 48442376 -95840113 - MER63A DNA MER1_type -1479 209 177 2397 128 63 28 chr12 48442376 48442638 -95839851 - MER65A LTR ERV1 0 445 194 225 0 0 0 chr12 48442638 48442663 -95839826 + (TA)n Simple_repeat Simple_repeat 1 25 0 387 0 0 0 chr12 48442663 48442706 -95839783 + (TG)n Simple_repeat Simple_repeat 1 43 0 2397 128 63 28 chr12 48442706 48442872 -95839617 - MER65A LTR ERV1 -250 195 1 614 300 29 38 chr12 48442872 48443048 -95839441 - MER63A DNA MER1_type -1511 177 2 8523 127 17 2 chr12 48445274 48447666 -95834823 - L1MA3 LINE L1 0 7724 5294 * 8567 140 31 12 chr12 48447662 48449748 -95832741 - L1MA3 LINE L1 -3224 4341 2214 3274 143 22 0 chr12 48449744 48450249 -95832240 - L1MA3 LINE L1 -6100 1465 950 * 394 301 25 74 chr12 48450262 48450465 -95832024 - L2 LINE L2 -3 3269 3077 626 196 0 0 chr12 48450502 48450609 -95831880 - FLAM_A SINE Alu -25 117 11 2311 69 42 0 chr12 48450725 48451014 -95831475 + AluSq SINE Alu 2 302 -11 1223 285 29 24 chr12 48452763 48453145 -95829344 + MLT1H1 LTR MaLR 56 439 -116 374 200 40 0 chr12 48453265 48453340 -95829149 + MLT1H1 LTR MaLR 448 525 -30 217 331 98 16 chr12 48453891 48454075 -95828414 + L2 LINE L2 3113 3311 -2 339 225 348 0 chr12 48454182 48454320 -95828169 - MIR3 SINE MIR -6 202 17 240 35 0 0 chr12 48454428 48454457 -95828032 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1578 199 4 0 chr12 48454468 48454744 -95827745 - AluJo SINE Alu -35 277 1 362 308 68 0 chr12 48455117 48455234 -95827255 - L2 LINE L2 0 3272 3148 679 266 93 36 chr12 48455949 48456197 -95826292 - MIR SINE MIR 0 262 1 277 289 176 0 chr12 48456206 48456365 -95826124 + L1MC4a LINE L1 4747 4933 -1213 21 0 0 0 chr12 48456530 48456551 -95825938 + AT_rich Low_complexity Low_complexity 1 21 0 376 292 58 115 chr12 48456584 48457306 -95825183 + L1MC4a LINE L1 5270 5950 -1858 1947 121 63 33 chr12 48457806 48458170 -95824319 + THE1C LTR MaLR 1 375 0 296 303 174 7 chr12 48458170 48458325 -95824164 + L2 LINE L2 3128 3308 -5 332 236 132 27 chr12 48458738 48459063 -95823426 - L1MC4a LINE L1 -13 6108 5748 871 246 29 10 chr12 48459087 48459294 -95823195 + MIR SINE MIR 35 245 -17 188 178 0 178 chr12 48460754 48460827 -95821662 + L3 LINE CR1 250 309 -1268 470 232 105 55 chr12 48461333 48461514 -95820975 + MIR3 SINE MIR 13 202 -6 1514 174 35 65 chr12 48461592 48461995 -95820494 + L1MB7 LINE L1 5793 6183 -1 236 169 0 17 chr12 48462005 48462064 -95820425 + (TATG)n Simple_repeat Simple_repeat 3 60 0 212 189 61 61 chr12 48462741 48462920 -95819569 + (TTTAA)n Simple_repeat Simple_repeat 1 179 0 426 139 14 0 chr12 48462922 48462993 -95819496 + Tigger5 DNA MER2_type 7 78 -2245 308 130 56 0 chr12 48462993 48463047 -95819442 - Tigger5 DNA MER2_type -3 2320 2264 * 395 161 0 0 chr12 48463045 48463107 -95819382 + Tigger5 DNA MER2_type 2262 2323 0 614 282 101 21 chr12 48463137 48463612 -95818877 - HAL1 LINE L1 -739 1768 1256 2334 99 3 0 chr12 48463712 48464024 -95818465 - AluSq SINE Alu 0 313 1 250 323 116 53 chr12 48464837 48465026 -95817463 + MIR SINE MIR 18 218 -44 22 0 0 0 chr12 48467271 48467293 -95815196 + AT_rich Low_complexity Low_complexity 1 22 0 862 236 21 29 chr12 48468076 48468317 -95814172 - MIR SINE MIR -15 247 9 210 150 0 0 chr12 48468387 48468427 -95814062 + (CA)n Simple_repeat Simple_repeat 2 41 0 4767 36 0 12 chr12 48469798 48470466 -95812023 - L1PA5 LINE L1 -296 5858 5199 2417 53 0 3 chr12 48470466 48470767 -95811722 + L1PA5 LINE L1 5848 6149 -5 410 309 61 17 chr12 48471061 48471242 -95811247 - MER5A DNA MER1_type 0 189 1 183 156 0 0 chr12 48471449 48471481 -95811008 + (CA)n Simple_repeat Simple_repeat 2 33 0 1011 274 79 83 chr12 48471931 48472115 -95810374 - L2 LINE L2 -16 3297 3114 273 57 0 0 chr12 48472115 48472150 -95810339 + (TG)n Simple_repeat Simple_repeat 2 36 0 1011 274 79 83 chr12 48472150 48472286 -95810203 - L2 LINE L2 -199 3114 2979 1491 158 97 0 chr12 48472286 48472545 -95809944 + AluJo SINE Alu 2 285 -27 342 80 0 0 chr12 48472545 48472595 -95809894 + (CA)n Simple_repeat Simple_repeat 2 51 0 1011 274 79 83 chr12 48472595 48472754 -95809735 - L2 LINE L2 -332 2981 2818 * 3353 250 152 18 chr12 48472752 48473946 -95808543 - L2 LINE L2 -839 2475 1123 1239 252 78 30 chr12 48473951 48474424 -95808065 - LTR33 LTR ERVL -21 500 5 394 250 0 23 chr12 48474424 48474512 -95807977 - L2 LINE L2 -2185 1129 1044 14099 130 32 2 chr12 48474515 48476846 -95805643 - Tigger1 DNA MER2_type -1 2417 16 1112 243 76 7 chr12 48476856 48477160 -95805329 - L2 LINE L2 -2270 1044 720 1997 128 3 29 chr12 48477892 48478198 -95804291 - AluSx SINE Alu -14 298 1 268 311 18 0 chr12 48478438 48478602 -95803887 + L1MC/D LINE L1 4370 4536 -1610 409 323 67 56 chr12 48478917 48479273 -95803216 + L1MC/D LINE L1 4883 5242 -904 1203 114 0 0 chr12 48479290 48479448 -95803041 + FRAM SINE Alu 1 158 -18 253 342 53 38 chr12 48479504 48479846 -95802643 + L1MC/D LINE L1 5296 5642 -520 268 301 31 41 chr12 48479909 48480105 -95802384 + L1MC/D LINE L1 5690 5883 -1925 457 299 122 27 chr12 48480114 48480335 -95802154 - MIR SINE MIR -13 249 8 25 0 0 0 chr12 48480585 48480610 -95801879 + AT_rich Low_complexity Low_complexity 1 25 0 1059 257 94 58 chr12 48480717 48481296 -95801193 - L2 LINE L2 0 3313 2708 390 274 47 16 chr12 48481843 48482033 -95800456 - LTR16C LTR ERVL -1 490 295 239 313 12 24 chr12 48482515 48482598 -95799891 + Charlie8 DNA MER1_type 2 83 -2334 1529 172 65 28 chr12 48482798 48483089 -95799400 - AluJo SINE Alu -10 302 1 508 173 261 81 chr12 48483142 48483178 -95799311 - LTR37B LTR ERV1 -100 368 340 1383 209 49 3 chr12 48483178 48483465 -95799024 + AluJb SINE Alu 1 300 -12 508 173 261 81 chr12 48483465 48483688 -95798801 - LTR37B LTR ERV1 -128 340 62 992 82 63 13 chr12 48483732 48483891 -95798598 - L1PA13 LINE L1 -4 6159 5993 339 284 53 0 chr12 48483892 48483987 -95798502 - MER5B DNA MER1_type -40 138 39 547 265 84 53 chr12 48484342 48484752 -95797737 - L1ME LINE L1 -493 5671 5254 823 274 68 69 chr12 48486317 48486893 -95795596 + MER31-int LTR ERV1 3327 3901 -1035 501 264 39 39 chr12 48486903 48487085 -95795404 + MER31-int LTR ERV1 3878 4059 -877 363 261 43 14 chr12 48487187 48487325 -95795164 + MER31-int LTR ERV1 4104 4245 -691 992 180 49 70 chr12 48487409 48487554 -95794935 + LTR37A LTR ERV1 54 201 -225 906 65 16 0 chr12 48487554 48487678 -95794811 + L1PA2 LINE L1 6026 6151 -4 992 180 49 70 chr12 48487678 48487859 -95794630 + LTR37A LTR ERV1 201 373 -53 300 277 46 31 chr12 48487907 48488037 -95794452 - L1ME LINE L1 -1133 5013 4882 2339 186 26 72 chr12 48488385 48488965 -95793524 + MLT2B3 LTR ERVL 2 554 0 727 168 168 6 chr12 48492050 48492211 -95790278 - MER5A DNA MER1_type -2 187 1 2381 92 3 0 chr12 48496538 48496873 -95785616 + THE1B LTR MaLR 1 336 -28 34145 97 10 10 chr12 48496876 48503012 -95779477 - L1PA6 LINE L1 -11 6143 11 333 106 0 0 chr12 48503015 48503062 -95779427 + THE1B LTR MaLR 318 364 0 2131 73 16 73 chr12 48504135 48504451 -95778038 + AluY SINE Alu 1 298 -13 477 0 0 0 chr12 48506235 48506288 -95776201 + (TG)n Simple_repeat Simple_repeat 2 54 0 1757 148 0 50 chr12 48506288 48506586 -95775903 - AluJo SINE Alu -29 283 1 302 209 0 15 chr12 48507309 48507376 -95775113 - L1MCa LINE L1 -4362 2064 1999 233 310 35 10 chr12 48508419 48508548 -95773941 - MIR SINE MIR -111 151 20 2071 146 3 0 chr12 48508838 48509146 -95773343 + AluJb SINE Alu 1 309 -3 27 73 0 0 chr12 48511519 48511574 -95770915 + AT_rich Low_complexity Low_complexity 1 55 0 25 65 0 0 chr12 48513173 48513219 -95769270 + AT_rich Low_complexity Low_complexity 1 46 0 219 370 30 10 chr12 48516461 48516561 -95765928 + MIR3 SINE MIR 87 188 -20 184 267 58 64 chr12 48517005 48517177 -95765312 + L2 LINE L2 2931 3101 -171 2193 115 36 38 chr12 48517464 48517829 -95764660 + THE1B LTR MaLR 1 364 0 1031 327 166 37 chr12 48519602 48520443 -95762046 - L3 LINE CR1 -2 1575 626 387 284 192 35 chr12 48520440 48520701 -95761788 + L2 LINE L2 2401 2702 -612 * 424 313 75 9 chr12 48520861 48521075 -95761414 - L3 LINE CR1 -1108 469 242 479 230 50 4 chr12 48521456 48521634 -95760855 + L1ME1 LINE L1 6030 6349 0 374 197 0 0 chr12 48521970 48522041 -95760448 - MER5A DNA MER1_type -100 89 19 1896 86 21 4 chr12 48522344 48522587 -95759902 - AluSx SINE Alu -17 295 49 2029 112 0 30 chr12 48523496 48523799 -95758690 + AluSx SINE Alu 1 294 -18 754 211 184 9 chr12 48524008 48524231 -95758258 - MIR SINE MIR 0 262 1 327 237 123 61 chr12 48525456 48525520 -95756969 + MIR SINE MIR 64 123 -139 3265 162 19 70 chr12 48525520 48526248 -95756241 - LTR8 LTR ERV1 0 691 1 327 237 123 61 chr12 48526248 48526297 -95756192 + MIR SINE MIR 123 184 -78 353 236 18 27 chr12 48526329 48526439 -95756050 - MER58 DNA MER1_type -232 109 1 205 191 0 0 chr12 48528119 48528161 -95754328 + GA-rich Low_complexity Low_complexity 1 42 0 374 337 48 82 chr12 48528549 48529003 -95753486 - L2 LINE L2 0 3272 2834 226 336 10 0 chr12 48529473 48529577 -95752912 - L1MC/D LINE L1 -1950 5858 5754 601 227 97 27 chr12 48530061 48530246 -95752243 + MIR SINE MIR 9 206 -56 243 0 0 0 chr12 48530380 48530407 -95752082 + (CA)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr12 48530744 48530768 -95751721 + AT_rich Low_complexity Low_complexity 1 24 0 1581 268 111 26 chr12 48531974 48532743 -95749746 + HAL1 LINE L1 74 907 -1600 1164 210 72 34 chr12 48532752 48533138 -95749351 + L1MC5 LINE L1 7390 7790 -171 1906 223 131 43 chr12 48533236 48533540 -95748949 + HAL1 LINE L1 961 1237 -1270 2081 88 49 33 chr12 48533540 48533847 -95748642 - AluSx SINE Alu 0 312 1 1906 223 131 43 chr12 48533847 48534349 -95748140 + HAL1 LINE L1 1237 1838 -669 532 198 108 18 chr12 48534350 48534461 -95748028 + MIR SINE MIR 109 229 -33 446 341 12 12 chr12 48534646 48534810 -95747679 - MIR3 SINE MIR -1 207 44 21 36 0 0 chr12 48535973 48536001 -95746488 + AT_rich Low_complexity Low_complexity 1 28 0 221 347 107 33 chr12 48536717 48536867 -95745622 + L2 LINE L2 3087 3247 -25 263 241 0 0 chr12 48537140 48537198 -95745291 - L2 LINE L2 -14 3258 3201 448 275 22 14 chr12 48537371 48537509 -95744980 + MIR SINE MIR 116 254 -8 3832 139 39 5 chr12 48537721 48538367 -95744122 + L1PB4 LINE L1 5488 6155 -1 1566 136 152 0 chr12 48538593 48538843 -95743646 - AluSg SINE Alu -22 288 1 1265 166 92 37 chr12 48539597 48539923 -95742566 + MER2 DNA MER2_type 1 344 0 180 0 0 0 chr12 48539941 48539961 -95742528 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1714 178 0 17 chr12 48539964 48540251 -95742238 - AluJo SINE Alu -30 282 1 2232 61 0 0 chr12 48541363 48541642 -95740847 - AluY SINE Alu 0 311 33 630 236 118 47 chr12 48542996 48543140 -95739349 - MIR SINE MIR -20 242 77 957 54 78 0 chr12 48543140 48543269 -95739220 + MER85 DNA T2_type 1 139 0 630 236 118 47 chr12 48543269 48543336 -95739153 - MIR SINE MIR -185 77 16 401 236 166 32 chr12 48543336 48543517 -95738972 - MIR SINE MIR -58 204 10 192 306 129 12 chr12 48543580 48543665 -95738824 - L2 LINE L2 -40 3232 3138 544 201 148 6 chr12 48543676 48543821 -95738668 + MER5A DNA MER1_type 6 174 -15 280 276 0 0 chr12 48544951 48545009 -95737480 + MIR SINE MIR 83 140 -68 2170 87 3 71 chr12 48546238 48546561 -95735928 - AluSx SINE Alu 0 312 12 2225 97 3 0 chr12 48547137 48547425 -95735064 - AluSp SINE Alu -24 289 1 274 167 0 0 chr12 48547911 48547953 -95734536 + 5S rRNA rRNA 1 42 -79 220 302 0 16 chr12 48548954 48549017 -95733472 + (TATG)n Simple_repeat Simple_repeat 3 64 0 26 0 0 0 chr12 48549128 48549154 -95733335 + AT_rich Low_complexity Low_complexity 1 26 0 310 262 161 73 chr12 48549389 48549419 -95733070 - L1ME4a LINE L1 0 6121 6095 1358 158 37 128 chr12 48549419 48549747 -95732742 + AluJb SINE Alu 1 298 -4 310 262 161 73 chr12 48549747 48549964 -95732525 - L1ME4a LINE L1 -26 6095 5852 217 161 54 0 chr12 48549993 48550049 -95732440 + (TTAA)n Simple_repeat Simple_repeat 3 61 0 286 222 31 74 chr12 48550049 48550211 -95732278 - L1ME4a LINE L1 -18 6103 5949 326 140 0 0 chr12 48550211 48550261 -95732228 + L2 LINE L2 3264 3313 0 255 103 0 0 chr12 48551075 48551114 -95731375 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 259 234 0 39 chr12 48551343 48551420 -95731069 + MLT1J LTR MaLR 94 167 -344 521 207 121 39 chr12 48551823 48552079 -95730410 - L1MC5 LINE L1 -36 7925 7649 1776 160 9 19 chr12 48552230 48552592 -95729897 + L1MA9 LINE L1 5328 5687 -625 581 168 10 10 chr12 48552592 48552693 -95729796 + AluJb SINE Alu 197 297 -15 35445 90 7 9 chr12 48552970 48555804 -95726685 + L1PA6 LINE L1 13 2852 -3302 2374 98 0 0 chr12 48555804 48556109 -95726380 + AluY SINE Alu 1 305 -6 35445 90 7 9 chr12 48556109 48559415 -95723074 + L1PA6 LINE L1 2852 6139 -15 41 58 0 0 chr12 48559426 48559495 -95722994 + AT_rich Low_complexity Low_complexity 1 69 0 305 228 19 99 chr12 48559507 48559669 -95722820 - L1ME4a LINE L1 -18 6103 5955 1641 190 24 46 chr12 48559679 48560094 -95722395 + L1MA9 LINE L1 5691 6096 -216 258 146 0 0 chr12 48560094 48560135 -95722354 - MER46B DNA MER2_type 0 236 196 4172 91 4 0 chr12 48560135 48560687 -95721802 - MER41A LTR ERV1 0 554 1 5485 94 34 6 chr12 48560687 48562256 -95720233 - MER41A-int LTR ERV1 -2 5944 4250 4764 101 48 28 chr12 48562275 48562812 -95719677 - MER41A-int LTR ERV1 -2354 3969 3445 2355 88 3 13 chr12 48562812 48563117 -95719372 + AluY SINE Alu 1 302 -9 4764 101 48 28 chr12 48563117 48563531 -95718958 - MER41A-int LTR ERV1 -2878 3445 1359 * 5040 132 78 16 chr12 48563520 48563544 -95718945 - MER41A-int LTR ERV1 -4839 1107 1086 216 0 0 0 chr12 48563544 48563568 -95718921 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 225 0 0 0 chr12 48563567 48563592 -95718897 + (GA)n Simple_repeat Simple_repeat 2 26 0 5040 132 78 16 chr12 48563568 48564527 -95717962 - MER41A-int LTR ERV1 -4860 1086 1 258 169 325 0 chr12 48564620 48564697 -95717792 - MER41A-int LTR ERV1 -5844 102 1 3825 103 80 4 chr12 48564763 48565278 -95717211 - MER41A LTR ERV1 0 554 1 1813 139 12 70 chr12 48565278 48565584 -95716905 - MER46B DNA MER2_type -2532 199 39 2083 150 0 0 chr12 48565584 48565884 -95716605 - AluSx SINE Alu -12 300 1 1813 139 12 70 chr12 48565884 48565921 -95716568 - MER46B DNA MER2_type -2692 39 1 934 197 22 11 chr12 48565921 48566104 -95716385 + L1MA9 LINE L1 6095 6279 -33 267 221 0 39 chr12 48566429 48566506 -95715983 + L1ME2 LINE L1 6091 6164 0 700 267 42 11 chr12 48566854 48567045 -95715444 + MIR SINE MIR 31 227 -35 300 214 51 68 chr12 48567368 48567485 -95715004 + MIR3 SINE MIR 87 201 -7 198 326 154 36 chr12 48567443 48567780 -95714709 + L2 LINE L2 2231 2607 -707 * 1119 183 22 49 chr12 48568746 48568970 -95713519 + MER20 DNA MER1_type 2 219 0 401 193 26 61 chr12 48569788 48569902 -95712587 + MIR3 SINE MIR 94 203 -5 455 265 11 70 chr12 48569983 48570168 -95712321 - MER5B DNA MER1_type 0 178 5 614 302 142 0 chr12 48570209 48570477 -95712012 - MER102b DNA MER1_type -32 309 4 509 353 6 0 chr12 48570914 48571070 -95711419 + MER5B DNA MER1_type 21 177 -1 413 195 70 70 chr12 48571179 48571307 -95711182 - MIR SINE MIR -70 192 65 25 31 0 0 chr12 48571460 48571492 -95710997 + AT_rich Low_complexity Low_complexity 1 32 0 1133 184 9 19 chr12 48571549 48571761 -95710728 - L1PB3 LINE L1 0 6154 5945 193 319 42 0 chr12 48571923 48571995 -95710494 - MIR3 SINE MIR -2 206 132 370 317 54 85 chr12 48572019 48572243 -95710246 - MIR SINE MIR -34 228 12 227 233 0 0 chr12 48573093 48573136 -95709353 - L2 LINE L2 -8 3305 3263 412 276 126 20 chr12 48573389 48573635 -95708854 + L2 LINE L2 2942 3213 -100 306 307 128 67 chr12 48576188 48576563 -95705926 - L1M2 LINE L1 -5450 1399 1002 401 248 145 47 chr12 48577858 48578072 -95704417 - MIR SINE MIR -6 256 22 291 332 144 16 chr12 48578245 48578432 -95704057 - MIR SINE MIR -13 249 39 1417 194 17 24 chr12 48579801 48580090 -95702399 - AluJo SINE Alu -25 287 1 305 260 114 65 chr12 48580346 48580369 -95702120 + MIR SINE MIR 134 154 -108 2352 127 83 39 chr12 48580369 48580778 -95701711 + MSTA LTR MaLR 2 428 0 305 260 114 65 chr12 48580778 48580877 -95701612 + MIR SINE MIR 154 262 0 2277 104 0 3 chr12 48581139 48581437 -95701052 + AluSp SINE Alu 1 297 -16 1013 260 12 8 chr12 48581527 48581777 -95700712 + MIR SINE MIR 12 262 0 404 143 12 0 chr12 48583366 48583450 -95699039 + CT-rich Low_complexity Low_complexity 3 87 0 235 308 0 0 chr12 48583452 48583517 -95698972 - L2 LINE L2 -1 3271 3207 1376 283 114 11 chr12 48583521 48584441 -95698048 - L1ME LINE L1 -503 5659 4640 501 333 22 48 chr12 48584605 48584836 -95697653 - MIR SINE MIR -18 244 20 369 0 0 0 chr12 48585190 48585231 -95697258 + (TG)n Simple_repeat Simple_repeat 1 41 0 1942 138 88 16 chr12 48585353 48585673 -95696816 + MER61A LTR ERV1 1 343 0 573 247 78 18 chr12 48586931 48587097 -95695392 + MER91A DNA MER1_type 1 176 -20 348 250 284 29 chr12 48587603 48587807 -95694682 - MIR SINE MIR -6 256 1 279 0 0 0 chr12 48588785 48588816 -95693673 + (TG)n Simple_repeat Simple_repeat 2 32 0 463 324 41 18 chr12 48589279 48589449 -95693040 + MIR3 SINE MIR 24 197 -11 959 176 45 87 chr12 48589742 48590031 -95692458 + Charlie1 DNA MER1_type 2484 2760 -1 678 231 84 74 chr12 48590035 48590238 -95692251 + MIR SINE MIR 12 216 -46 194 91 30 0 chr12 48590290 48590323 -95692166 + (GTTTG)n Simple_repeat Simple_repeat 4 37 0 285 357 0 0 chr12 48590976 48591074 -95691415 - MIR SINE MIR -111 151 54 411 57 0 0 chr12 48591798 48591851 -95690638 - MADE1 DNA Mariner -27 53 1 586 193 89 108 chr12 48591959 48592172 -95690317 + MER3 DNA MER1_type 1 209 0 198 0 0 0 chr12 48592192 48592214 -95690275 + (A)n Simple_repeat Simple_repeat 1 22 0 2325 79 3 0 chr12 48592780 48593070 -95689419 - AluSp SINE Alu -7 306 16 333 308 227 31 chr12 48593609 48593779 -95688710 - L2 LINE L2 -6 3307 3172 216 0 0 0 chr12 48593779 48593803 -95688686 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2073 93 0 0 chr12 48593803 48594060 -95688429 - AluSc SINE Alu -17 292 36 333 308 227 31 chr12 48594060 48594209 -95688280 - L2 LINE L2 -140 3173 2924 * 376 287 11 0 chr12 48594184 48594278 -95688211 - L2 LINE L2 -499 2815 2721 14719 54 12 1 chr12 48594299 48596827 -95685662 + L1PA5 LINE L1 3610 6151 -3 360 212 0 0 chr12 48596842 48596908 -95685581 + AluJ/FRAM SINE Alu 221 286 -16 1929 251 27 20 chr12 48596922 48597476 -95685013 - L2 LINE L2 -1299 2015 1458 279 54 0 0 chr12 48598245 48598282 -95684207 + (CA)n Simple_repeat Simple_repeat 2 38 0 217 276 57 76 chr12 48600308 48600413 -95682076 + L2 LINE L2 3180 3282 -31 373 213 25 0 chr12 48600474 48600554 -95681935 + MER113 DNA MER1_type? 1 82 -439 787 232 164 18 chr12 48600560 48600896 -95681593 - MER113 DNA MER1_type? -46 475 91 241 250 56 14 chr12 48600904 48600976 -95681513 - MLT1H LTR MaLR -3 546 472 519 263 173 0 chr12 48602070 48602226 -95680263 - MIR SINE MIR -22 240 58 232 217 87 14 chr12 48602487 48602556 -95679933 - MIR3 SINE MIR -2 206 133 23 0 0 0 chr12 48603500 48603523 -95678966 + AT_rich Low_complexity Low_complexity 1 23 0 355 246 67 37 chr12 48604165 48604299 -95678190 + MIR SINE MIR 88 225 -37 208 154 0 26 chr12 48604332 48604371 -95678118 - MIR SINE MIR -113 149 112 977 141 65 0 chr12 48605020 48605204 -95677285 + L1MA4 LINE L1 6099 6294 -6 236 339 53 47 chr12 48605448 48605619 -95676870 + L2 LINE L2 3089 3260 -12 228 67 0 0 chr12 48605914 48605944 -95676545 + (T)n Simple_repeat Simple_repeat 1 30 0 578 265 83 0 chr12 48607875 48608056 -95674433 - L1MC4 LINE L1 0 8042 7847 555 274 74 45 chr12 48608071 48608407 -95674082 - L1MC4 LINE L1 -255 7787 7442 21 0 0 0 chr12 48609109 48609130 -95673359 + AT_rich Low_complexity Low_complexity 1 21 0 882 176 0 0 chr12 48609172 48609303 -95673186 - FLAM_A SINE Alu 0 133 3 2048 158 39 0 chr12 48609311 48609647 -95672842 - L1MB1 LINE L1 -17 6151 5803 708 247 54 31 chr12 48609910 48610133 -95672356 - L1MC4a LINE L1 -1911 5897 5670 23 33 0 0 chr12 48610194 48610224 -95672265 + AT_rich Low_complexity Low_complexity 1 30 0 266 207 0 52 chr12 48610416 48610474 -95672015 - L2 LINE L2 -4 3268 3214 215 229 0 21 chr12 48610840 48610888 -95671601 + CT-rich Low_complexity Low_complexity 2 48 0 2120 132 0 0 chr12 48611101 48611404 -95671085 - AluSx SINE Alu -9 303 1 335 380 22 13 chr12 48611469 48611693 -95670796 - L1 LINE L1 -1716 4430 4205 2068 112 31 3 chr12 48611745 48612032 -95670457 - AluSq SINE Alu -18 295 1 195 42 0 0 chr12 48612145 48612169 -95670320 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 6783 243 27 7 chr12 48612193 48614244 -95668245 + L1P LINE L1 1459 3543 -2603 197 300 180 30 chr12 48615155 48615255 -95667234 + L2 LINE L2 3171 3285 -28 455 134 49 0 chr12 48615971 48616053 -95666436 + MER113 DNA MER1_type? 1 86 -435 605 266 106 74 chr12 48616124 48616411 -95666078 + MLT1H LTR MaLR 49 341 -214 1783 195 96 0 chr12 48616411 48616744 -95665745 - MLT1A1 LTR MaLR 0 365 1 605 266 106 74 chr12 48616744 48616772 -95665717 + MLT1H LTR MaLR 341 367 -188 181 286 9 141 chr12 48617000 48617213 -95665276 - L2 LINE L2 -48 3224 3040 620 259 76 48 chr12 48617729 48617980 -95664509 + MIR SINE MIR 5 262 0 1950 144 40 17 chr12 48619460 48619808 -95662681 - L1MB8 LINE L1 -171 6007 5652 2101 101 42 3 chr12 48620034 48620320 -95662169 - AluY SINE Alu -14 297 1 262 261 109 22 chr12 48620757 48620783 -95661706 - MLT1I LTR MaLR -9 400 378 249 98 0 0 chr12 48620783 48620824 -95661665 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 262 261 109 22 chr12 48620824 48620889 -95661600 - MLT1I LTR MaLR -31 378 301 1033 175 67 57 chr12 48620931 48621246 -95661243 + LTR65 LTR ERV1 9 326 -343 1119 183 22 49 chr12 48622935 48623159 -95659330 + MER20 DNA MER1_type 2 219 0 414 229 112 92 chr12 48623786 48624035 -95658454 - MIR SINE MIR -4 258 5 792 196 74 75 chr12 48624274 48624546 -95657943 - L1MB3 LINE L1 -2 6181 5915 2435 93 0 3 chr12 48625675 48625988 -95656501 - AluSx SINE Alu 0 312 1 280 279 49 109 chr12 48626208 48626391 -95656098 + L2 LINE L2 2332 2503 -811 198 175 25 0 chr12 48626580 48626620 -95655869 - L2 LINE L2 -211 3061 3021 1049 254 96 17 chr12 48626883 48627301 -95655188 - Charlie7 DNA MER1_type -66 2546 2096 1019 265 83 8 chr12 48627326 48627699 -95654790 - Charlie7 DNA MER1_type -1952 660 260 401 257 195 0 chr12 48628000 48628113 -95654376 + L2 LINE L2 3138 3272 0 2440 91 0 0 chr12 48628579 48628886 -95653603 + AluSc SINE Alu 1 307 -2 183 129 0 0 chr12 48629169 48629200 -95653289 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 246 206 48 0 chr12 48629347 48629410 -95653079 + GA-rich Low_complexity Low_complexity 4 69 0 508 247 293 10 chr12 48629550 48629942 -95652547 - L1ME4a LINE L1 -16 6105 5603 8126 168 17 181 chr12 48629959 48630381 -95652108 + L1MA4 LINE L1 1 490 -6359 1955 166 7 0 chr12 48630381 48630688 -95651801 + AluJb SINE Alu 1 309 -3 8126 168 17 181 chr12 48630688 48631763 -95650726 + L1MA4 LINE L1 490 782 -6067 204 97 0 0 chr12 48631763 48631794 -95650695 + (CA)n Simple_repeat Simple_repeat 2 32 0 8126 168 17 181 chr12 48631794 48633239 -95649250 + L1MA4 LINE L1 782 2462 -4387 38483 88 9 7 chr12 48633246 48639381 -95643108 + L1PA6 LINE L1 11 6154 0 6558 197 57 9 chr12 48639388 48640272 -95642217 + L1MA4 LINE L1 2449 3288 -3560 2433 89 13 3 chr12 48640272 48640587 -95641902 + L1PA11 LINE L1 5846 6163 -11 6558 197 57 9 chr12 48640587 48641708 -95640781 + L1MA4 LINE L1 3288 4555 -2293 2290 124 29 20 chr12 48641766 48642114 -95640375 - THE1B LTR MaLR -11 353 3 10954 98 8 16 chr12 48642116 48643620 -95638869 - THE1B-int LTR MaLR 0 1580 89 810 71 71 0 chr12 48643644 48643756 -95638733 - THE1B LTR MaLR -244 120 1 1004 244 0 0 chr12 48643768 48643981 -95638508 - AluJb SINE Alu -13 299 87 5443 152 67 1 chr12 48643982 48644479 -95638010 + L1MA4 LINE L1 5551 6014 -988 2186 101 0 0 chr12 48644479 48644756 -95637733 + AluSc SINE Alu 12 288 -21 5443 152 67 1 chr12 48644756 48645623 -95636866 + L1MA4 LINE L1 6014 6996 -6 848 277 48 0 chr12 48645635 48645866 -95636623 + MIR SINE MIR 20 261 -1 351 0 0 0 chr12 48645970 48646009 -95636480 + (CA)n Simple_repeat Simple_repeat 2 40 0 1963 139 14 0 chr12 48646777 48647072 -95635417 + AluSx SINE Alu 5 303 -9 434 267 46 38 chr12 48648061 48648192 -95634297 + MER5A DNA MER1_type 30 161 -28 206 269 0 19 chr12 48648206 48648258 -95634231 + MER5A DNA MER1_type 133 183 -6 227 256 105 0 chr12 48648833 48648919 -95633570 + MIR SINE MIR 120 214 -48 622 267 125 17 chr12 48649028 48649260 -95633229 - MIR SINE MIR 0 262 6 403 206 89 101 chr12 48649898 48650224 -95632265 + L1ME4a LINE L1 5799 6120 -1 2073 100 24 3 chr12 48650307 48650597 -95631892 + AluSq SINE Alu 1 296 -17 211 214 0 0 chr12 48651564 48651606 -95630883 + MIR SINE MIR 1 42 -220 1713 111 0 40 chr12 48651715 48651968 -95630521 + AluSg SINE Alu 1 243 -67 32376 88 11 17 chr12 48652069 48656610 -95625879 - HERVH LTR ERV1 -115 7598 3086 3113 186 37 0 chr12 48656610 48657175 -95625314 + L1MB7 LINE L1 5580 6165 -19 736 268 54 88 chr12 48657466 48657854 -95624635 + LTR33 LTR ERVL 1 375 -146 3268 163 36 39 chr12 48658442 48659105 -95623384 - LTR65 LTR ERV1 0 669 9 262 261 109 22 chr12 48659147 48659212 -95623277 + MLT1I LTR MaLR 301 378 -31 282 73 0 0 chr12 48659212 48659253 -95623236 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 262 261 109 22 chr12 48659253 48659279 -95623210 + MLT1I LTR MaLR 378 400 -9 2101 101 42 3 chr12 48659715 48660001 -95622488 + AluY SINE Alu 1 297 -14 2280 140 29 68 chr12 48660227 48660683 -95621806 + L1MB7 LINE L1 5652 6089 -95 1898 155 3 10 chr12 48660687 48660996 -95621493 - Tigger3b DNA MER2_type -1 1230 924 2343 132 24 16 chr12 48660998 48661369 -95621120 - THE1C LTR MaLR -1 374 1 * 5021 134 48 17 chr12 48661369 48661582 -95620907 - Tigger3b DNA MER2_type -2101 927 722 2184 123 0 0 chr12 48661582 48661874 -95620615 - AluSc SINE Alu -17 292 1 5021 134 48 17 chr12 48661874 48661962 -95620527 - Tigger3b DNA MER2_type -2306 722 638 2329 104 0 0 chr12 48661962 48662269 -95620220 - AluY SINE Alu -4 307 1 5021 134 48 17 chr12 48662269 48662841 -95619648 - Tigger3b DNA MER2_type -2390 638 26 416 163 75 0 chr12 48662850 48662930 -95619559 + L1MB8 LINE L1 6077 6162 -16 933 273 131 14 chr12 48663684 48664050 -95618439 + MLT1I LTR MaLR 1 409 0 13244 159 18 18 chr12 48664880 48665845 -95616644 - L1MA3 LINE L1 0 7724 6761 2186 124 0 3 chr12 48665845 48666144 -95616345 + AluSq SINE Alu 1 298 -15 13244 159 18 18 chr12 48666144 48668068 -95614421 - L1MA3 LINE L1 -963 6761 4839 2211 101 7 14 chr12 48668068 48668364 -95614125 + AluSq SINE Alu 1 294 -19 13244 159 18 18 chr12 48668364 48668673 -95613816 - L1MA3 LINE L1 -2885 4839 4532 2215 112 0 10 chr12 48668673 48668985 -95613504 - AluSx SINE Alu -3 309 1 13244 159 18 18 chr12 48668985 48669398 -95613091 - L1MA3 LINE L1 -3192 4532 4095 2563 179 29 6 chr12 48669516 48669992 -95612497 + L1MB4 LINE L1 5689 6175 -5 810 169 15 0 chr12 48670141 48670271 -95612218 + AluSq/x SINE Alu 2 133 -180 5850 160 14 3 chr12 48670275 48671295 -95611194 - L1PA5 LINE L1 -5 6149 5105 231 36 0 0 chr12 48671295 48671323 -95611166 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5850 160 14 3 chr12 48671323 48671868 -95610621 - L1PA5 LINE L1 -1049 5105 4567 * 16875 138 18 11 chr12 48671861 48674530 -95607959 - L1MA3 LINE L1 -4144 3421 736 2285 107 0 0 chr12 48674989 48675289 -95607200 - AluSx SINE Alu -12 300 1 4033 174 31 4 chr12 48675487 48676194 -95606295 + L1MB4 LINE L1 5450 6175 -5 810 169 15 0 chr12 48676343 48676473 -95606016 + AluSq/x SINE Alu 2 133 -180 19044 50 3 0 chr12 48676477 48679501 -95602988 - L1PA5 LINE L1 -7 6147 3115 223 301 108 0 chr12 48679535 48679628 -95602861 - MIR SINE MIR -157 105 3 558 275 68 108 chr12 48679879 48680525 -95601964 - L2 LINE L2 -8 3264 2637 2162 85 0 11 chr12 48680831 48681140 -95601349 - AluSg1 SINE Alu 0 306 1 271 206 27 14 chr12 48681480 48681553 -95600936 - MER116 DNA Mariner 0 80 7 303 186 34 0 chr12 48681964 48682023 -95600466 - L1ME LINE L1 -336 5834 5774 210 189 0 19 chr12 48682079 48682132 -95600357 + T-rich Low_complexity Low_complexity 2 53 0 2232 78 55 0 chr12 48682134 48682374 -95600115 - L1PB1 LINE L1 -119 6032 5770 198 0 0 0 chr12 48682374 48682396 -95600093 + (TG)n Simple_repeat Simple_repeat 2 23 0 2232 78 55 0 chr12 48682396 48682462 -95600027 - L1PB1 LINE L1 -381 5770 5709 278 223 139 127 chr12 48682468 48682634 -95599855 + MIR SINE MIR 13 180 -82 332 255 31 23 chr12 48682689 48682809 -95599680 - MIR SINE MIR -69 139 20 21 0 0 0 chr12 48682971 48682992 -95599497 + AT_rich Low_complexity Low_complexity 1 21 0 1746 186 0 13 chr12 48683466 48683777 -95598712 + AluJb SINE Alu 1 307 -5 565 268 55 75 chr12 48685226 48685610 -95596879 - MER68 LTR ERV1 -31 531 156 225 257 80 91 chr12 48685618 48685793 -95596696 - MER77 LTR ERV1 -432 173 1 259 248 27 128 chr12 48686100 48686169 -95596320 - L2 LINE L2 -5 3308 3260 2388 95 0 0 chr12 48686169 48686475 -95596014 - AluY SINE Alu -5 306 1 259 248 27 128 chr12 48686475 48686554 -95595935 - L2 LINE L2 -53 3260 3175 434 152 51 13 chr12 48686714 48686793 -95595696 + MER81 DNA DNA 1 82 -32 209 200 0 0 chr12 48687370 48687410 -95595079 + CT-rich Low_complexity Low_complexity 1 40 0 1735 114 114 7 chr12 48687413 48687686 -95594803 - AluJb SINE Alu -10 302 1 620 228 15 37 chr12 48687745 48687881 -95594608 - FLAM_A SINE Alu 0 133 1 322 227 35 92 chr12 48688433 48688574 -95593915 + MER5A DNA MER1_type 35 167 -22 192 204 114 0 chr12 48688720 48688764 -95593725 - L2 LINE L2 -3 3269 3221 216 0 0 0 chr12 48688813 48688837 -95593652 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 220 213 0 0 chr12 48689022 48689069 -95593420 + (CATTA)n Simple_repeat Simple_repeat 3 49 0 242 320 0 13 chr12 48692766 48692844 -95589645 + L2 LINE L2 3234 3310 -3 25 31 0 0 chr12 48693479 48693511 -95588978 + AT_rich Low_complexity Low_complexity 1 32 0 201 39 0 0 chr12 48694516 48694542 -95587947 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 22 35 0 0 chr12 48695442 48695471 -95587018 + AT_rich Low_complexity Low_complexity 1 29 0 1079 133 92 20 chr12 48697133 48697328 -95585161 - Tigger4(Zombi) DNA MER2_type 0 2731 2523 505 130 87 11 chr12 48697309 48697401 -95585088 - Tigger4(Zombi) DNA MER2_type -2589 142 44 * 192 262 111 78 chr12 48698591 48698744 -95583745 + MIR SINE MIR 36 192 -66 1246 194 109 42 chr12 48698803 48699086 -95583403 + AluJo SINE Alu 1 302 0 22 56 0 0 chr12 48701051 48701087 -95581402 + GC_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 48701726 48701749 -95580740 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 48702169 48702190 -95580299 + AT_rich Low_complexity Low_complexity 1 21 0 205 181 48 36 chr12 48702433 48702516 -95579973 + (CCCCG)n Simple_repeat Simple_repeat 5 88 0 308 242 100 84 chr12 48704591 48704781 -95577708 - MER112 DNA MER1_type -2 258 66 269 174 0 138 chr12 48704817 48704865 -95577624 - MER112 DNA MER1_type -166 94 68 2102 137 62 12 chr12 48704865 48705186 -95577303 + MER1B DNA MER1_type 1 337 0 269 174 0 138 chr12 48705186 48705246 -95577243 - MER112 DNA MER1_type -192 68 1 1637 210 125 51 chr12 48705663 48705826 -95576663 + MLT1F1 LTR MaLR 1 150 -417 2317 97 7 0 chr12 48705826 48706126 -95576363 + AluSp SINE Alu 1 302 -11 1637 210 125 51 chr12 48706126 48706493 -95575996 + MLT1F1 LTR MaLR 150 567 0 650 231 28 44 chr12 48706896 48707078 -95575411 + L2 LINE L2 3117 3295 -18 665 299 57 31 chr12 48707135 48707486 -95575003 + L2 LINE L2 2316 2675 -639 629 155 21 0 chr12 48707522 48707619 -95574870 + Tigger7 DNA MER2_type 2489 2587 0 621 281 139 37 chr12 48707620 48707915 -95574574 + L2 LINE L2 2979 3303 -10 191 217 0 22 chr12 48707939 48707985 -95574504 + L2 LINE L2 3262 3306 -7 212 232 0 14 chr12 48708027 48708096 -95574393 + T-rich Low_complexity Low_complexity 5 72 0 919 157 60 0 chr12 48708098 48708264 -95574225 - AluSg/x SINE Alu 0 310 135 2347 85 3 7 chr12 48708524 48708830 -95573659 - AluY SINE Alu -6 305 1 2842 116 25 22 chr12 48708890 48709338 -95573151 - L1MA8 LINE L1 -5 6286 5838 2821 185 48 6 chr12 48709572 48710090 -95572399 - MLT1F LTR MaLR -2 540 1 389 36 0 18 chr12 48710121 48710177 -95572312 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1469 170 82 4 chr12 48710180 48710450 -95572039 - AluJb SINE Alu -21 291 1 563 315 119 19 chr12 48710465 48710827 -95571662 - MLT1L LTR MaLR -25 590 193 2330 97 0 10 chr12 48710957 48711267 -95571222 + AluSq SINE Alu 1 307 -6 207 333 0 13 chr12 48712892 48712967 -95569522 + G-rich Low_complexity Low_complexity 1 74 0 234 132 29 29 chr12 48713143 48713211 -95569278 + GA-rich Low_complexity Low_complexity 1 68 0 318 330 10 0 chr12 48713350 48713453 -95569036 + MIR SINE MIR 158 261 -1 343 271 161 47 chr12 48713491 48713564 -95568925 - L1ME LINE L1 -303 5818 5755 2449 46 0 3 chr12 48713564 48713873 -95568616 - AluY SINE Alu 0 308 1 343 271 161 47 chr12 48713873 48714097 -95568392 - L1ME LINE L1 -366 5755 5486 5798 159 67 11 chr12 48715035 48716310 -95566179 + L1MB3 LINE L1 14 1427 -4957 2714 113 52 0 chr12 48716310 48716717 -95565772 + MSTA LTR MaLR 1 428 0 5798 159 67 11 chr12 48716717 48717073 -95565416 + L1MB3 LINE L1 1427 1762 -4622 2989 163 56 9 chr12 48717070 48718038 -95564451 + L1MB3 LINE L1 1974 2998 -3384 * 21 0 0 0 chr12 48718038 48718059 -95564430 + AT_rich Low_complexity Low_complexity 1 21 0 41083 61 5 4 chr12 48718059 48724177 -95558312 - L1PA5 LINE L1 -11 6143 22 2075 256 24 24 chr12 48724240 48724390 -95558099 + L1MB3 LINE L1 2958 3107 -3275 2106 112 0 30 chr12 48724390 48724686 -95557803 - AluSg1 SINE Alu -22 287 1 2075 256 24 24 chr12 48724686 48725278 -95557211 + L1MB3 LINE L1 3106 3700 -2682 2034 139 40 4 chr12 48725294 48725641 -95556848 - MER46B DNA MER2_type -8 228 -3 6865 202 26 37 chr12 48725644 48725798 -95556691 + L1MB3 LINE L1 3717 3871 -2511 1870 184 0 0 chr12 48725798 48726108 -95556381 - AluJo SINE Alu -2 310 1 6865 202 26 37 chr12 48726108 48727671 -95554818 + L1MB3 LINE L1 3871 5415 -967 476 157 108 0 chr12 48727678 48727780 -95554709 + L1MB3 LINE L1 6069 6181 -2 4417 176 67 5 chr12 48727796 48728736 -95553753 + L1MB3 LINE L1 5421 6412 -7 420 221 112 92 chr12 48728983 48729232 -95553257 + MIR SINE MIR 5 258 -4 427 122 57 8 chr12 48729698 48729821 -95552668 + (TA)n Simple_repeat Simple_repeat 2 130 0 690 157 34 22 chr12 48730138 48730296 -95552193 + L1M2 LINE L1 5656 5816 -382 561 88 0 11 chr12 48730324 48730415 -95552074 + L1MB7 LINE L1 6086 6175 -9 23 33 0 0 chr12 48730529 48730559 -95551930 + AT_rich Low_complexity Low_complexity 1 30 0 975 92 0 0 chr12 48730587 48730718 -95551771 + AluY SINE Alu 178 308 -3 1236 247 17 39 chr12 48782036 48782518 -95499971 + L1MC1 LINE L1 4055 4525 -1621 6233 156 25 13 chr12 48782518 48784020 -95498469 + L1MC1 LINE L1 4813 6330 -3 35 0 0 0 chr12 48784020 48784055 -95498434 + AT_rich Low_complexity Low_complexity 1 35 0 491 253 60 79 chr12 48784072 48784555 -95497934 - HAL1 LINE L1 -1241 1266 793 225 284 0 0 chr12 48784583 48784650 -95497839 + MER52A LTR ERV1 1 67 -1688 2625 197 95 29 chr12 48785233 48786403 -95496086 + MER52A LTR ERV1 203 1512 -243 259 125 21 0 chr12 48786408 48786456 -95496033 + MER52C LTR ERV1 1230 1278 0 350 308 133 51 chr12 48786549 48787059 -95495430 - HAL1 LINE L1 -1842 665 114 253 237 119 42 chr12 48787197 48787315 -95495174 + L1ME4a LINE L1 5964 6090 -31 201 74 0 0 chr12 48787950 48787977 -95494512 + (TTA)n Simple_repeat Simple_repeat 2 28 0 300 276 11 0 chr12 48788765 48788852 -95493637 - MIR SINE MIR -2 260 173 325 265 0 0 chr12 48790237 48790305 -95492184 - L2 LINE L2 0 3313 3246 2614 119 41 7 chr12 48790588 48791001 -95491488 - MSTA LTR MaLR 0 428 2 216 293 49 12 chr12 48792559 48792641 -95489848 + MIR SINE MIR 51 135 -127 520 298 40 31 chr12 48793315 48793540 -95488949 - MIR SINE MIR -34 228 2 349 288 53 45 chr12 48793550 48793682 -95488807 + MIR SINE MIR 68 200 -62 297 283 40 20 chr12 48793749 48793848 -95488641 + L2 LINE L2 3172 3272 0 38693 66 5 3 chr12 48794220 48800345 -95482144 - L1PA5 LINE L1 -1 6153 11 204 330 97 37 chr12 48800368 48800668 -95481821 - L2 LINE L2 -587 2727 2410 * 861 290 52 8 chr12 48800666 48800914 -95481575 - MIR SINE MIR 0 262 4 21 0 0 0 chr12 48801573 48801594 -95480895 + AT_rich Low_complexity Low_complexity 1 21 0 2299 113 0 3 chr12 48803494 48803805 -95478684 + AluSg SINE Alu 1 310 0 191 330 43 0 chr12 48803944 48804038 -95478451 + L2 LINE L2 2633 2730 -584 617 130 0 0 chr12 48804138 48804230 -95478259 - Tigger7 DNA MER2_type -22 2465 2374 973 161 31 0 chr12 48804246 48804407 -95478082 - Tigger7 DNA MER2_type -532 201 36 302 232 0 14 chr12 48804886 48804955 -95477534 + MIR SINE MIR 82 149 -113 210 180 0 20 chr12 48805425 48805475 -95477014 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 320 70 0 0 chr12 48805504 48805547 -95476942 + Alu SINE Alu 1 43 -256 664 193 165 71 chr12 48806215 48806427 -95476062 + MIR SINE MIR 5 236 -26 2159 134 39 35 chr12 48806464 48806897 -95475592 - L1MA8 LINE L1 -3 6288 5854 393 298 89 0 chr12 48807296 48807420 -95475069 + L2 LINE L2 3179 3313 0 288 0 0 0 chr12 48808183 48808215 -95474274 + (TTA)n Simple_repeat Simple_repeat 2 33 0 440 18 0 0 chr12 48808526 48808581 -95473908 - L1PA6 LINE L1 -5 6149 6095 180 189 0 27 chr12 48809106 48809143 -95473346 - L2 LINE L2 -11 3261 3226 181 272 302 6 chr12 48809436 48809605 -95472884 - L2 LINE L2 -453 2861 2643 257 203 40 40 chr12 48809736 48809810 -95472679 - MIR SINE MIR -101 161 88 23 54 0 0 chr12 48810940 48810977 -95471512 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr12 48813045 48813066 -95469423 + AT_rich Low_complexity Low_complexity 1 21 0 536 378 40 3 chr12 48814301 48814603 -95467886 - L3 LINE CR1 -747 830 518 248 316 163 32 chr12 48814596 48814786 -95467703 - L2 LINE L2 -2 3270 3056 * 363 311 62 43 chr12 48815009 48815266 -95467223 - L1 LINE L1 -1726 4420 4159 22 56 0 0 chr12 48815527 48815563 -95466926 + AT_rich Low_complexity Low_complexity 1 36 0 676 157 16 8 chr12 48815901 48816022 -95466467 + FLAM_A SINE Alu 15 136 -6 733 112 0 0 chr12 48816051 48816167 -95466322 + MER4A LTR ERV1 1 116 -548 1585 100 0 0 chr12 48816167 48816367 -95466122 + AluSq SINE Alu 1 200 -113 2619 110 55 2 chr12 48816369 48816787 -95465702 + MER4A LTR ERV1 199 638 -26 232 326 220 9 chr12 48816990 48817217 -95465272 - L2 LINE L2 -602 2712 2438 280 322 83 8 chr12 48817377 48817498 -95464991 - L2 LINE L2 -925 2389 2260 825 106 0 0 chr12 48817650 48817773 -95464716 - L1MB3 LINE L1 0 6183 6061 31 20 0 20 chr12 48817773 48817797 -95464692 + AT_rich Low_complexity Low_complexity 1 24 -24 1986 119 50 6 chr12 48817797 48818140 -95464349 - L1MA5A LINE L1 -5 6934 6577 31 20 0 20 chr12 48818140 48818164 -95464325 + AT_rich Low_complexity Low_complexity 24 48 0 11417 199 44 26 chr12 48818185 48821058 -95461431 - L1MA5A LINE L1 -525 6414 3593 1296 124 0 0 chr12 48821058 48821235 -95461254 + AluY SINE Alu 122 298 -13 11417 199 44 26 chr12 48821235 48822850 -95459639 - L1MA5A LINE L1 -3346 3593 2008 2239 97 3 3 chr12 48822850 48823139 -95459350 - AluSp SINE Alu -17 296 8 11417 199 44 26 chr12 48823139 48824870 -95457619 - L1MA5A LINE L1 -4931 2008 3 602 139 36 15 chr12 48824887 48824996 -95457493 - L1M LINE L1 -764 5420 5306 2146 93 0 3 chr12 48824996 48825296 -95457193 - L1PA10 LINE L1 -4 6164 5866 602 139 36 15 chr12 48825296 48825323 -95457166 - L1M LINE L1 -878 5306 5281 240 0 0 0 chr12 48826541 48826577 -95455912 - L1PA4 LINE L1 -1 6154 6119 826 198 44 26 chr12 48826847 48827120 -95455369 + MER33 DNA MER1_type 47 324 0 1202 182 19 9 chr12 48827129 48827343 -95455146 - MER20 DNA MER1_type 0 219 4 217 371 35 9 chr12 48830091 48830207 -95452282 + L2 LINE L2 3195 3313 0 264 30 0 0 chr12 48830677 48830710 -95451779 + (TC)n Simple_repeat Simple_repeat 2 34 0 594 259 54 46 chr12 48830818 48831077 -95451412 - MIR SINE MIR 0 262 2 244 341 29 58 chr12 48831092 48831230 -95451259 + L2 LINE L2 3117 3250 -22 21 0 0 0 chr12 48831472 48831493 -95450996 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 48832504 48832527 -95449962 + AT_rich Low_complexity Low_complexity 1 23 0 186 366 201 6 chr12 48832642 48832806 -95449683 + MIR3 SINE MIR 9 204 -4 2289 200 27 0 chr12 48834982 48835463 -95447026 - L1MB5 LINE L1 -15 6159 5666 5816 83 0 2 chr12 48835472 48836290 -95446199 - L1PA8 LINE L1 -10 6162 5347 6434 77 3 1 chr12 48836292 48837210 -95445279 - L1PA6 LINE L1 0 6154 5235 * 15129 86 3 14 chr12 48837208 48839523 -95442966 - L1PA6 LINE L1 -2477 3669 1382 2757 236 47 23 chr12 48839649 48839739 -95442750 + L1ME1 LINE L1 5150 5236 -930 1609 220 145 39 chr12 48839739 48840249 -95442240 - MLT1F1 LTR MaLR -1 566 3 2757 236 47 23 chr12 48840249 48841155 -95441334 + L1ME1 LINE L1 5236 6161 -5 426 271 103 19 chr12 48841434 48841589 -95440900 + MIR SINE MIR 14 181 -81 42160 40 1 1 chr12 48841590 48847736 -95434753 + L1PA3 LINE L1 7 6152 -3 25899 86 4 5 chr12 48848423 48850100 -95432389 + L1PA7 LINE L1 1518 3195 -2959 1572 141 122 11 chr12 48850100 48850363 -95432126 + AluSc SINE Alu 1 292 -17 25899 86 4 5 chr12 48850363 48853325 -95429164 + L1PA7 LINE L1 3195 6154 0 1552 220 142 13 chr12 48853334 48854389 -95428100 + L1M4 LINE L1 1719 2914 -3468 2169 120 0 3 chr12 48855172 48855463 -95427026 - AluSx SINE Alu -20 292 3 192 415 65 24 chr12 48855549 48855672 -95426817 - MIR3 SINE MIR -68 140 13 401 169 12 0 chr12 48856311 48856394 -95426095 + CT-rich Low_complexity Low_complexity 4 87 0 1135 310 101 26 chr12 48856463 48857125 -95425364 + L2 LINE L2 1936 2647 -667 195 279 103 0 chr12 48857596 48857664 -95424825 + L2 LINE L2 3198 3272 0 2348 71 0 35 chr12 48857858 48858169 -95424320 - AluY SINE Alu -11 300 1 245 254 70 0 chr12 48858229 48858300 -95424189 - MIR SINE MIR -90 172 97 1218 218 74 12 chr12 48858411 48858829 -95423660 + L1M4 LINE L1 4776 5219 -1163 1856 144 15 15 chr12 48858864 48859198 -95423291 + MER61A LTR ERV1 8 341 -2 291 255 9 9 chr12 48859220 48859326 -95423163 + L1M4 LINE L1 5228 5333 -1049 12027 138 41 23 chr12 48859471 48862298 -95420191 - L1P3 LINE L1 -3198 3263 353 360 0 0 0 chr12 48862298 48862338 -95420151 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 12027 138 41 23 chr12 48862338 48862688 -95419801 - L1P3 LINE L1 -6108 353 11 1084 175 18 45 chr12 48862686 48862897 -95419592 - L1M3 LINE L1 -503 5677 5481 * 2204 108 0 7 chr12 48862897 48863194 -95419295 + AluSc SINE Alu 1 295 -14 1084 175 18 45 chr12 48863194 48863266 -95419223 - L1M3 LINE L1 -699 5481 5409 1168 158 43 32 chr12 48863903 48864324 -95418165 - L1M3 LINE L1 -731 5443 5025 906 261 36 30 chr12 48864325 48864765 -95417724 - L1M4 LINE L1 -2971 4237 3795 3441 199 33 13 chr12 48865254 48866038 -95416451 - L1P LINE L1 -5336 810 11 14745 101 5 3 chr12 48866046 48868327 -95414162 - L1P LINE L1 -776 5370 3085 248 321 161 22 chr12 48868763 48868900 -95413589 + MIR3 SINE MIR 2 157 -51 258 279 0 23 chr12 48869049 48869135 -95413354 - MIR SINE MIR -2 260 177 427 296 148 23 chr12 48869148 48869405 -95413084 - LTR67 LTR ERVL 0 557 269 265 277 153 15 chr12 48869453 48869590 -95412899 - LTR67 LTR ERVL -400 157 2 392 273 97 16 chr12 48869603 48869751 -95412738 - MIR SINE MIR -68 140 13 2260 92 27 0 chr12 48871623 48871915 -95410574 - AluY SINE Alu -11 300 1 189 205 26 0 chr12 48872185 48872224 -95410265 - MIR SINE MIR -146 116 77 6506 116 36 6 chr12 48872338 48873746 -95408743 + L1MA2 LINE L1 4854 6304 0 202 361 8 42 chr12 48873873 48873992 -95408497 + L2 LINE L2 2939 3053 -219 180 0 0 0 chr12 48874156 48874176 -95408313 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6663 267 53 13 chr12 48874529 48876505 -95405984 - L1M4 LINE L1 -5122 2087 1 2746 225 48 56 chr12 48876593 48877775 -95404714 + L1M4 LINE L1 825 1998 -4648 * 11554 124 11 48 chr12 48877774 48880339 -95402150 + L1P3 LINE L1 1 2567 -3894 1720 170 0 26 chr12 48881331 48881637 -95400852 + AluJb SINE Alu 1 298 -14 1290 248 50 59 chr12 48881927 48882331 -95400158 - L2 LINE L2 0 3313 2914 194 128 26 0 chr12 48882433 48882472 -95400017 + CT-rich Low_complexity Low_complexity 1 40 0 291 225 38 0 chr12 48883100 48883180 -95399309 + (TA)n Simple_repeat Simple_repeat 2 84 0 253 322 117 71 chr12 48883943 48884226 -95398263 - L2 LINE L2 0 3272 2977 221 325 38 0 chr12 48884266 48884346 -95398143 - L2 LINE L2 -399 2915 2833 201 324 15 0 chr12 48884547 48884615 -95397874 - MIR SINE MIR -183 79 11 688 271 4 59 chr12 48884653 48884889 -95397600 + MIR SINE MIR 32 254 -8 279 114 0 0 chr12 48884892 48884936 -95397553 + (ATG)n Simple_repeat Simple_repeat 1 44 0 873 232 0 26 chr12 48885190 48885380 -95397109 - MER5A DNA MER1_type -4 185 1 258 105 0 0 chr12 48885946 48885984 -95396505 + (TG)n Simple_repeat Simple_repeat 1 38 0 201 39 0 0 chr12 48885983 48886009 -95396480 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 25 0 0 0 chr12 48886421 48886446 -95396043 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 48886532 48886553 -95395936 + AT_rich Low_complexity Low_complexity 1 21 0 2516 83 3 3 chr12 48887023 48887335 -95395154 + AluSp SINE Alu 1 312 -1 261 0 0 0 chr12 48888404 48888433 -95394056 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2201 144 71 22 chr12 48888632 48889043 -95393446 - L1MC1 LINE L1 -19 6594 6164 597 203 20 0 chr12 48889097 48889245 -95393244 - L1M4 LINE L1 -1592 4554 4404 5878 230 26 64 chr12 48889259 48892877 -95389612 - L1MC1 LINE L1 -524 6089 2714 4599 171 13 3 chr12 48892879 48900022 -95382467 + L1PA14 LINE L1 1 7598 -1 3912 241 67 62 chr12 48900023 48900261 -95382228 - L1MC1 LINE L1 -3702 2724 2489 1951 119 3 61 chr12 48900261 48900588 -95381901 - AluSx SINE Alu 0 312 5 2004 143 3 10 chr12 48900595 48900609 -95381880 - AluSx SINE Alu -14 298 285 216 0 0 0 chr12 48900609 48900633 -95381856 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2004 143 3 10 chr12 48900633 48900918 -95381571 - AluSx SINE Alu -27 285 1 3912 241 67 62 chr12 48900918 48901105 -95381384 - L1MC1 LINE L1 -3942 2484 2299 2116 110 41 0 chr12 48901105 48901397 -95381092 - AluSx SINE Alu -8 304 1 3912 241 67 62 chr12 48901397 48903056 -95379433 - L1MC1 LINE L1 -4127 2299 622 1951 137 55 27 chr12 48903059 48903424 -95379065 - THE1C LTR MaLR 0 375 1 10163 118 26 40 chr12 48903424 48905028 -95377461 - THE1C-int LTR MaLR 0 1580 1 877 114 101 6 chr12 48905028 48905186 -95377303 - THE1C LTR MaLR 0 375 203 2379 87 0 0 chr12 48905201 48905500 -95376989 + AluY SINE Alu 1 299 -12 1365 156 35 57 chr12 48905525 48905816 -95376673 + MSTB1 LTR MaLR 123 408 -24 367 60 0 0 chr12 48905816 48905866 -95376623 - L1PA3 LINE L1 -3 6152 6103 1365 156 35 57 chr12 48905866 48905889 -95376600 + MSTB1 LTR MaLR 408 430 -2 425 191 34 0 chr12 48905889 48905978 -95376511 - L1MC1 LINE L1 -6299 127 36 21 0 0 0 chr12 48905991 48906012 -95376477 + AT_rich Low_complexity Low_complexity 1 21 0 208 304 72 14 chr12 48908638 48908707 -95373782 - L2 LINE L2 -58 3214 3142 761 264 42 14 chr12 48908764 48908980 -95373509 + MIR SINE MIR 7 228 -34 203 167 0 21 chr12 48909331 48909379 -95373110 + A-rich Low_complexity Low_complexity 2 48 0 201 147 0 0 chr12 48909396 48909430 -95373059 + (GGGGA)n Simple_repeat Simple_repeat 3 36 0 2234 102 0 55 chr12 48909865 48910190 -95372299 - AluSg SINE Alu -3 307 1 506 319 73 13 chr12 48910239 48910552 -95371937 + L2 LINE L2 2858 3189 -124 769 247 156 40 chr12 48910556 48910961 -95371528 - LTR16A1 LTR ERVL 0 457 6 498 284 16 0 chr12 48910964 48911091 -95371398 + L2 LINE L2 3185 3313 0 418 273 34 113 chr12 48911062 48911300 -95371189 - L2 LINE L2 -9 3263 3045 * 201 39 0 0 chr12 48911979 48912005 -95370484 + (TG)n Simple_repeat Simple_repeat 1 26 0 1898 152 3 10 chr12 48912091 48912380 -95370109 - AluJb SINE Alu -25 287 1 374 198 246 8 chr12 48913118 48913244 -95369245 + MIR3 SINE MIR 30 185 -23 29 0 0 0 chr12 48914329 48914358 -95368131 + AT_rich Low_complexity Low_complexity 1 29 0 294 232 49 0 chr12 48916658 48916740 -95365749 - MER94 DNA DNA -41 93 8 264 321 19 9 chr12 48917754 48917860 -95364629 - MIR SINE MIR -128 134 28 215 256 179 0 chr12 48918124 48918202 -95364287 - L2 LINE L2 -3 3310 3219 336 289 77 10 chr12 48918857 48918961 -95363528 - MIR3 SINE MIR -9 199 89 1343 258 130 27 chr12 48918967 48919540 -95362949 - L2 LINE L2 -1 3312 2691 485 298 88 11 chr12 48920323 48920504 -95361985 - MIR SINE MIR -48 214 20 717 333 184 7 chr12 48920628 48921046 -95361443 - L3 LINE CR1 -4 1573 1082 190 358 77 24 chr12 48921100 48921307 -95361182 - L3 LINE CR1 -616 961 744 793 137 0 0 chr12 48921451 48921575 -95360914 + L1PA14 LINE L1 6036 6159 -2 1761 164 27 17 chr12 48922049 48922348 -95360141 - AluJo SINE Alu -10 302 1 24 53 0 0 chr12 48922533 48922571 -95359918 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr12 48922899 48922939 -95359550 + AT_rich Low_complexity Low_complexity 1 40 0 482 296 120 69 chr12 48923028 48923618 -95358871 - L1M4 LINE L1 -1347 4799 4158 782 226 208 0 chr12 48923618 48923892 -95358597 + MER46C DNA MER2_type 5 335 -3 482 296 120 69 chr12 48923892 48924087 -95358402 - L1M4 LINE L1 -1988 4158 3974 247 137 0 39 chr12 48924360 48924411 -95358078 - Alu SINE Alu -1 301 253 2326 191 19 2 chr12 48924515 48924934 -95357555 - MSTB LTR MaLR 0 426 1 9290 159 27 11 chr12 48924934 48926557 -95355932 - MSTB-int LTR MaLR 0 1651 2 2302 173 19 12 chr12 48926558 48926981 -95355508 - MSTB LTR MaLR 0 426 1 837 215 32 117 chr12 48927004 48927320 -95355169 + MLT1H LTR MaLR 66 354 -195 312 345 150 9 chr12 48927429 48927649 -95354840 - L1M4 LINE L1 -2289 3857 3607 21 0 0 0 chr12 48927999 48928020 -95354469 + AT_rich Low_complexity Low_complexity 1 21 0 410 305 75 35 chr12 48928083 48928233 -95354256 + MIR SINE MIR 79 238 -24 2778 71 6 0 chr12 48928233 48928586 -95353903 + THE1A LTR MaLR 1 355 0 410 305 75 35 chr12 48928586 48928609 -95353880 + MIR SINE MIR 238 259 -3 909 219 59 95 chr12 48928681 48929037 -95353452 - L1ME3A LINE L1 0 6170 5833 1709 136 46 85 chr12 48929037 48929427 -95353062 + THE1C LTR MaLR 1 375 0 909 219 59 95 chr12 48929427 48929531 -95352958 - L1ME3A LINE L1 -337 5833 5727 242 214 71 0 chr12 48929559 48929657 -95352832 - L1M4 LINE L1 -2922 3224 3120 231 152 0 0 chr12 48930008 48930054 -95352435 + (TCCA)n Simple_repeat Simple_repeat 4 49 0 216 344 31 10 chr12 48930145 48930241 -95352248 - L2 LINE L2 -577 2737 2640 21 0 0 0 chr12 48930795 48930816 -95351673 + AT_rich Low_complexity Low_complexity 1 21 0 1814 161 6 3 chr12 48931897 48932208 -95350281 + AluJb SINE Alu 1 312 0 294 345 73 36 chr12 48934227 48934392 -95348097 - L2 LINE L2 -21 3251 3081 25 51 0 0 chr12 48934721 48934760 -95347729 + AT_rich Low_complexity Low_complexity 1 39 0 1437 163 89 3 chr12 48934761 48935098 -95347391 - HsTC2 DNA Tc2 -11 1887 1522 1224 242 91 52 chr12 48935105 48935687 -95346802 - L1ME3A LINE L1 -5 6165 5561 216 309 93 31 chr12 48936995 48937092 -95345397 + L2 LINE L2 3203 3305 -8 2748 16 0 16 chr12 48937555 48937871 -95344618 + AluY SINE Alu 1 311 0 269 247 32 21 chr12 48938908 48939001 -95343488 - MLT1K LTR MaLR -121 467 374 219 295 39 13 chr12 48939006 48939084 -95343405 - L2 LINE L2 -54 3259 3180 235 299 30 81 chr12 48939280 48939477 -95343012 + L2 LINE L2 2489 2675 -639 397 259 124 26 chr12 48939735 48939928 -95342561 + MLT1I LTR MaLR 195 406 -3 2416 99 48 20 chr12 48940244 48940598 -95341891 - THE1B LTR MaLR 0 364 1 232 333 51 0 chr12 48940647 48940725 -95341764 - L2 LINE L2 -31 3282 3201 184 231 135 0 chr12 48941015 48941067 -95341422 + L2 LINE L2 2884 2942 -372 328 323 21 10 chr12 48941765 48941957 -95340532 + MER117 DNA MER1_type 4 197 0 206 289 19 0 chr12 48941966 48942018 -95340471 - MIR SINE MIR -58 150 98 349 287 67 27 chr12 48942419 48942642 -95339847 - L1ME3A LINE L1 -240 5930 5699 180 105 105 53 chr12 48942855 48942893 -95339596 + MER5B DNA MER1_type 113 152 -26 449 328 40 17 chr12 48943088 48943265 -95339224 + MER5A DNA MER1_type 8 188 -1 5956 212 53 35 chr12 48943758 48945326 -95337163 + L1MB7 LINE L1 5 1641 -5005 2295 106 0 3 chr12 48945326 48945629 -95336860 + AluY SINE Alu 1 302 -9 5956 212 53 35 chr12 48945629 48946101 -95336388 + L1MB7 LINE L1 1641 2103 -4543 360 195 25 42 chr12 48946157 48946275 -95336214 - L1M4c LINE L1 -4256 2128 2013 8185 200 49 15 chr12 48946287 48949395 -95333094 + L1MB7 LINE L1 3443 6653 -29 210 327 159 9 chr12 48949546 48949659 -95332830 - L2 LINE L2 0 3272 3143 * 472 246 109 44 chr12 48949654 48949837 -95332652 + L3 LINE CR1 1373 1567 -10 390 311 20 27 chr12 48950305 48950453 -95332036 + MIR SINE MIR 66 212 -50 391 295 33 8 chr12 48950924 48951046 -95331443 + MIR SINE MIR 22 146 -62 43 20 0 0 chr12 48951539 48951589 -95330900 + AT_rich Low_complexity Low_complexity 1 50 0 2190 101 0 3 chr12 48951763 48952050 -95330439 + AluSc SINE Alu 1 286 -23 460 298 90 50 chr12 48953220 48953677 -95328812 + MLT1H LTR MaLR 1 475 -74 1518 185 41 134 chr12 48953709 48954321 -95328168 - MLT1F1 LTR MaLR 0 567 10 310 191 0 15 chr12 48954803 48954871 -95327618 + MLT1H LTR MaLR 483 549 0 201 39 0 0 chr12 48955439 48955465 -95327024 + (A)n Simple_repeat Simple_repeat 1 26 0 298 346 47 0 chr12 48955730 48955857 -95326632 - L2 LINE L2 -576 2738 2606 222 333 65 24 chr12 48955860 48955983 -95326506 + MIR3 SINE MIR 50 177 -31 637 286 193 22 chr12 48956140 48956462 -95326027 - L3 LINE CR1 -63 1514 1138 851 270 18 9 chr12 48958091 48958313 -95324176 - MIR SINE MIR -16 246 23 303 316 160 5 chr12 48958557 48958769 -95323720 - MIR SINE MIR -6 256 12 225 331 77 24 chr12 48960087 48960256 -95322233 - L2 LINE L2 -1863 1451 1274 207 0 0 0 chr12 48960694 48960717 -95321772 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7760 18 1 1 chr12 48960768 48962327 -95320162 - L1PA2 LINE L1 -5 6150 4592 5795 25 0 0 chr12 48962329 48963040 -95319449 + L1PA2 LINE L1 3876 4586 -1560 446 254 87 89 chr12 48963058 48963321 -95319168 + MIR SINE MIR 3 262 0 672 217 72 14 chr12 48964148 48964369 -95318120 - L1M4 LINE L1 -2397 3749 3516 300 154 0 0 chr12 48964369 48964421 -95318068 + (TG)n Simple_repeat Simple_repeat 2 53 0 2089 118 0 3 chr12 48966210 48966534 -95315955 + AluSx SINE Alu 1 323 0 1114 144 12 37 chr12 48966825 48967070 -95315419 - L1PB4 LINE L1 -228 5928 5718 * 3351 166 21 13 chr12 48967067 48968158 -95314331 + L1PB4 LINE L1 4614 5709 -447 431 249 43 109 chr12 48968252 48968465 -95314024 - L1MEc LINE L1 -4503 2001 1729 645 177 9 0 chr12 48968467 48968580 -95313909 + AluJb SINE Alu 3 116 -196 2427 83 0 10 chr12 48968618 48968649 -95313840 - AluY SINE Alu 0 311 281 219 36 0 0 chr12 48968649 48968677 -95313812 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2427 83 0 10 chr12 48968677 48968959 -95313530 - AluY SINE Alu -30 281 1 3872 159 12 1 chr12 48968971 48969638 -95312851 - L1PA16 LINE L1 -16 6150 5477 302 239 33 0 chr12 48969649 48969741 -95312748 - L1MC4a LINE L1 -1194 6614 6520 315 83 0 0 chr12 48969748 48969796 -95312693 - L1PA15 LINE L1 -6 6159 6112 296 64 21 0 chr12 48969830 48969877 -95312612 + (TC)n Simple_repeat Simple_repeat 2 49 0 2783 121 7 2 chr12 48969888 48970327 -95312162 - L1PA15 LINE L1 -53 6112 5672 * 4239 194 38 1 chr12 48970324 48971158 -95311331 - MSTB-int LTR MaLR -786 865 1 2490 145 39 7 chr12 48971158 48971571 -95310918 - MSTB LTR MaLR 0 426 1 361 296 100 15 chr12 48971573 48971833 -95310656 + L1MEc LINE L1 1294 1575 -4821 3199 131 25 8 chr12 48971881 48972290 -95310199 + L1P4 LINE L1 4698 5099 -1067 2218 113 72 20 chr12 48972290 48972636 -95309853 - THE1B LTR MaLR 0 364 1 3199 131 25 8 chr12 48972636 48973191 -95309298 + L1P4 LINE L1 5099 5675 -491 26 74 0 0 chr12 48973481 48973535 -95308954 + AT_rich Low_complexity Low_complexity 1 54 0 584 248 0 0 chr12 48973615 48973732 -95308757 + FLAM_A SINE Alu 7 123 -19 282 277 50 0 chr12 48974317 48974418 -95308071 - ERVL LTR ERVL -4593 1171 1066 591 295 48 2 chr12 48974499 48974737 -95307752 + MLT1H LTR MaLR 1 289 -260 444 221 21 43 chr12 48974811 48974951 -95307538 + MLT1H LTR MaLR 405 541 -8 23 0 0 0 chr12 48974957 48974980 -95307509 + AT_rich Low_complexity Low_complexity 1 23 0 2423 133 35 18 chr12 48975367 48975802 -95306687 - L1PA16 LINE L1 -1 6165 5724 229 268 71 24 chr12 48976232 48976359 -95306130 - LTR67 LTR ERVL -51 506 374 208 307 67 60 chr12 48976737 48976887 -95305602 + MIR SINE MIR 112 262 0 2049 119 7 0 chr12 48977275 48977585 -95304904 + AluSx SINE Alu 3 314 0 280 211 40 40 chr12 48977637 48977713 -95304776 + MIR SINE MIR 187 262 0 364 227 38 30 chr12 48978965 48979097 -95303392 - MER94 DNA DNA -1 133 1 24 32 0 0 chr12 48979452 48979483 -95303006 + AT_rich Low_complexity Low_complexity 1 31 0 414 278 141 49 chr12 48979570 48980138 -95302351 - HAL1 LINE L1 -737 1770 1151 1284 135 0 0 chr12 48980736 48980921 -95301568 + AluSc SINE Alu 124 308 -1 226 328 218 11 chr12 48981367 48981541 -95300948 + MIR SINE MIR 47 256 -6 241 267 17 0 chr12 48981554 48981614 -95300875 + L2 LINE L2 3164 3224 -48 22 70 0 0 chr12 48981656 48981699 -95300790 + AT_rich Low_complexity Low_complexity 1 43 0 233 143 0 0 chr12 48981699 48981748 -95300741 - L1MA7 LINE L1 0 6291 6243 4340 170 31 4 chr12 48981773 48982612 -95299877 - L1MA7 LINE L1 0 6291 5430 1739 171 9 39 chr12 48982612 48983101 -95299388 + L1MA7 LINE L1 4961 5437 -743 3055 127 11 4 chr12 48983152 48983602 -95298887 - MLT2A2 LTR ERVL 0 453 1 28539 81 16 6 chr12 48983602 48987571 -95294918 - HERVL-A2-A2 LTR ERVL 0 5654 1645 1700 154 3 64 chr12 48987571 48987705 -95294784 + AluSx SINE Alu 1 142 -170 1780 54 0 0 chr12 48987705 48987928 -95294561 + L1PA4 LINE L1 5933 6155 0 1700 154 3 64 chr12 48987928 48988104 -95294385 + AluSx SINE Alu 142 292 -20 12066 78 2 10 chr12 48988104 48989767 -95292722 - HERVL-A2-A2 LTR ERVL -4005 1649 1 3203 95 20 18 chr12 48989767 48990219 -95292270 - MLT2A2 LTR ERVL 0 453 1 592 295 84 35 chr12 48990239 48990466 -95292023 - MIR SINE MIR -24 238 1 1172 183 5 10 chr12 48990640 48990848 -95291641 + L1PA16 LINE L1 3 209 -6640 * 9489 159 29 8 chr12 48990840 48992526 -95289963 + L1PA16 LINE L1 958 2678 -4171 1446 108 5 0 chr12 48992526 48992720 -95289769 - AluSg/x SINE Alu -11 299 105 1278 133 27 0 chr12 48992732 48992957 -95289532 + L1PA16 LINE L1 2721 2951 -3898 36391 83 6 7 chr12 48992966 48999115 -95283374 + L1PA6 LINE L1 11 6153 -1 11200 206 21 20 chr12 48999116 49002269 -95280220 + L1PA16 LINE L1 2938 6100 -769 2001 119 7 3 chr12 49002269 49002562 -95279927 + AluSq SINE Alu 1 294 -19 11200 206 21 20 chr12 49002562 49002947 -95279542 + L1PA16 LINE L1 6100 6483 -386 1550 170 0 10 chr12 49002948 49003254 -95279235 + L1PA14 LINE L1 4066 4368 -2481 1237 13 0 0 chr12 49003256 49003405 -95279084 + L1PA4 LINE L1 6002 6150 -5 8193 174 32 7 chr12 49003405 49005822 -95276667 + L1PA14 LINE L1 4366 6863 -1 2235 158 13 3 chr12 49006025 49006410 -95276079 + L1PA16 LINE L1 6476 6864 -5 25 31 0 0 chr12 49006795 49006827 -95275662 + AT_rich Low_complexity Low_complexity 1 32 0 519 182 28 6 chr12 49006831 49007007 -95275482 + (TA)n Simple_repeat Simple_repeat 1 180 0 282 56 0 0 chr12 49007096 49007132 -95275357 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 839 82 0 8 chr12 49007150 49007272 -95275217 + (GGAA)n Simple_repeat Simple_repeat 1 121 0 382 255 54 27 chr12 49007809 49007958 -95274531 + L1ME LINE L1 5122 5274 -872 3322 127 16 87 chr12 49007984 49008662 -95273827 + L1MB2 LINE L1 5537 6166 -5 1854 147 3 23 chr12 49009018 49009318 -95273171 - AluJo SINE Alu -18 294 1 22 0 0 0 chr12 49009327 49009349 -95273140 + AT_rich Low_complexity Low_complexity 1 22 0 339 297 117 28 chr12 49009899 49010370 -95272119 + L1ME LINE L1 5296 5817 -304 1816 158 45 0 chr12 49010485 49010815 -95271674 + L1PB4 LINE L1 5811 6155 -1 402 205 161 0 chr12 49010943 49011055 -95271434 - MLT1H LTR MaLR -341 208 79 5376 21 0 0 chr12 49011115 49011733 -95270756 + L1PA3 LINE L1 5538 6155 0 372 313 55 16 chr12 49012291 49012419 -95270070 - L2 LINE L2 -4 3268 3136 515 157 83 9 chr12 49012562 49012670 -95269819 + MER63 DNA MER1_type 44 785 -277 1642 173 52 6 chr12 49012672 49012996 -95269493 - MER44D DNA MER2_type 0 609 1 459 311 26 44 chr12 49013050 49013278 -95269211 - L2 LINE L2 -213 3059 2836 371 258 20 33 chr12 49013282 49013433 -95269056 + (TG)n Simple_repeat Simple_repeat 1 149 0 1483 220 24 34 chr12 49013437 49013745 -95268744 - MLT1A2 LTR MaLR 0 374 64 1998 162 30 30 chr12 49013745 49014109 -95268380 + THE1B LTR MaLR 1 364 0 11570 93 15 0 chr12 49014110 49015665 -95266824 + THE1B-int LTR MaLR 2 1580 0 2036 144 39 30 chr12 49015665 49016026 -95266463 + THE1B LTR MaLR 1 364 0 1483 220 24 34 chr12 49016026 49016092 -95266397 - MLT1A2 LTR MaLR -308 66 1 1972 133 11 0 chr12 49016225 49016510 -95265979 - AluSx SINE Alu -11 301 14 236 319 118 21 chr12 49016619 49016763 -95265726 - MIR3 SINE MIR -32 176 19 2129 111 44 0 chr12 49016778 49017076 -95265413 - AluY SINE Alu 0 311 1 2429 222 47 29 chr12 49017370 49017419 -95265070 - L1MDa LINE L1 -3065 3475 3428 2333 96 0 0 chr12 49017419 49017720 -95264769 - AluY SINE Alu -6 305 5 2429 222 47 29 chr12 49017720 49018896 -95263593 - L1MDa LINE L1 -3112 3428 2234 618 222 28 6 chr12 49018938 49019118 -95263371 - L1MDa LINE L1 -4397 2143 1960 2741 113 39 7 chr12 49019152 49019567 -95262922 - MSTA LTR MaLR 0 428 1 1463 211 41 6 chr12 49019886 49020320 -95262169 + L1MC4a LINE L1 5177 5636 -528 180 111 0 0 chr12 49023201 49023228 -95259261 + (TG)n Simple_repeat Simple_repeat 1 27 0 228 236 0 18 chr12 49023228 49023283 -95259206 + (CATA)n Simple_repeat Simple_repeat 1 54 0 266 197 40 72 chr12 49023384 49023486 -95259003 - MIR SINE MIR -27 181 74 309 298 159 0 chr12 49024951 49025077 -95257412 + MIR3 SINE MIR 34 180 -28 541 125 0 0 chr12 49025536 49025624 -95256865 - L1MB4 LINE L1 0 6180 6093 1822 164 42 0 chr12 49025624 49025936 -95256553 + MER7A DNA MER2_type 24 346 0 26 64 0 0 chr12 49026250 49026297 -95256192 + AT_rich Low_complexity Low_complexity 1 47 0 204 261 0 72 chr12 49026403 49026472 -95256017 + L2 LINE L2 3205 3268 -4 193 307 93 0 chr12 49033724 49033799 -95248690 - MIR3 SINE MIR -8 200 119 391 297 0 43 chr12 49037065 49037203 -95245286 - MIR SINE MIR -65 197 66 431 272 63 7 chr12 49038221 49038414 -95244075 + L1MC4a LINE L1 5678 5799 -322 275 291 177 25 chr12 49038700 49038858 -95243631 - MIR SINE MIR -60 202 21 420 20 0 0 chr12 49038991 49039040 -95243449 + (TG)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr12 49039106 49039127 -95243362 + AT_rich Low_complexity Low_complexity 1 21 0 555 35 23 23 chr12 49039183 49039270 -95243219 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 472 343 84 54 chr12 49039277 49039743 -95242746 - L2 LINE L2 -463 2851 2372 22 0 0 0 chr12 49039917 49039939 -95242550 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr12 49041721 49041743 -95240746 + (T)n Simple_repeat Simple_repeat 1 22 0 519 319 126 63 chr12 49043147 49043561 -95238928 - L2 LINE L2 -6 3266 2827 200 143 238 0 chr12 49044987 49045029 -95237460 - L2 LINE L2 -1 3312 3261 2240 92 0 3 chr12 49045775 49046058 -95236431 + AluSq SINE Alu 1 282 -31 250 319 0 0 chr12 49047623 49047692 -95234797 - L2 LINE L2 -4 3309 3241 508 310 94 79 chr12 49047881 49048666 -95233823 - L2 LINE L2 -427 2887 2091 395 302 26 17 chr12 49049819 49049935 -95232554 + MIR3 SINE MIR 42 158 -50 429 262 79 118 chr12 49050101 49050850 -95231639 + L1MEd LINE L1 534 1253 -4866 304 236 39 39 chr12 49051162 49051289 -95231200 - HAL1b LINE L1 -468 880 754 779 264 107 84 chr12 49051522 49052448 -95230041 - HAL1 LINE L1 -743 1764 818 1406 331 71 34 chr12 49053108 49053133 -95229356 + L2 LINE L2 2191 2214 -1100 2535 179 6 59 chr12 49053133 49053675 -95228814 + MLT2B2 LTR ERVL 3 515 0 1406 331 71 34 chr12 49053675 49054408 -95228081 + L2 LINE L2 2214 2977 -337 246 318 0 0 chr12 49054469 49054535 -95227954 - L2 LINE L2 -197 3075 3010 484 241 62 41 chr12 49054669 49054814 -95227675 - MIR SINE MIR -4 258 111 305 289 158 13 chr12 49054916 49055068 -95227421 + MIR SINE MIR 76 249 -13 1796 126 40 7 chr12 49055294 49055572 -95226917 + AluSx SINE Alu 5 291 -21 180 324 84 14 chr12 49055821 49055892 -95226597 - L2 LINE L2 -63 3209 3134 270 323 79 37 chr12 49056061 49056250 -95226239 + L2 LINE L2 2397 2593 -721 294 306 150 47 chr12 49056254 49056755 -95225734 + L2 LINE L2 2730 3271 -42 22 0 0 0 chr12 49059478 49059500 -95222989 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr12 49061051 49061087 -95221402 + AT_rich Low_complexity Low_complexity 1 36 0 1529 121 0 0 chr12 49063465 49063680 -95218809 + AluY SINE Alu 87 301 -10 2345 96 0 7 chr12 49064028 49064330 -95218159 + AluSx SINE Alu 1 300 -12 25 0 0 0 chr12 49064724 49064749 -95217740 + AT_rich Low_complexity Low_complexity 1 25 0 5258 196 61 10 chr12 49064922 49065960 -95216529 + L1M1 LINE L1 825 1915 -5650 2294 61 51 0 chr12 49066478 49066774 -95215715 + AluY SINE Alu 1 311 0 215 326 118 21 chr12 49066792 49066936 -95215553 + MIR3 SINE MIR 19 176 -32 1787 134 22 0 chr12 49067045 49067322 -95215167 + AluSx SINE Alu 14 296 -16 6435 77 3 0 chr12 49067455 49068338 -95214151 + L1P LINE L1 4289 5174 -972 1023 219 77 53 chr12 49068924 49069416 -95213073 + L1MD2 LINE L1 5795 6349 -10 475 244 89 0 chr12 49069415 49069550 -95212939 + L1MD2 LINE L1 6202 6348 -11 * 301 278 11 0 chr12 49069551 49069641 -95212848 + L1MD2 LINE L1 6203 6293 -66 228 366 23 6 chr12 49069932 49070107 -95212382 + CT-rich Low_complexity Low_complexity 1 178 0 * 259 390 0 0 chr12 49070012 49070117 -95212372 + C-rich Low_complexity Low_complexity 2 106 0 32 0 0 0 chr12 49070240 49070272 -95212217 + GC_rich Low_complexity Low_complexity 1 32 0 48 56 0 0 chr12 49071923 49071994 -95210495 + GC_rich Low_complexity Low_complexity 1 71 0 227 78 52 52 chr12 49072016 49072093 -95210396 + (CGCGG)n Simple_repeat Simple_repeat 4 80 0 35 24 0 0 chr12 49072268 49072310 -95210179 + GC_rich Low_complexity Low_complexity 1 42 0 5739 73 2 42 chr12 49072597 49073497 -95208992 + L1P LINE L1 2884 3747 -2399 3927 209 5 4 chr12 49073808 49074633 -95207856 + L1 LINE L1 4413 5238 -908 3729 43 2 0 chr12 49075079 49075524 -95206965 + L1PA3 LINE L1 5710 6155 0 695 218 24 4 chr12 49075760 49076014 -95206475 + C-rich Low_complexity Low_complexity 1 259 0 356 346 12 12 chr12 49076015 49076177 -95206312 + CT-rich Low_complexity Low_complexity 2 163 0 326 42 21 0 chr12 49076590 49076638 -95205851 + (TTCTC)n Simple_repeat Simple_repeat 5 53 0 679 322 69 32 chr12 49076639 49077204 -95205285 + L2 LINE L2 2149 2734 -580 52 19 0 0 chr12 49077436 49077490 -95204999 + GC_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr12 49077551 49077573 -95204916 + GC_rich Low_complexity Low_complexity 1 22 0 230 309 32 21 chr12 49078495 49078589 -95203900 - L2 LINE L2 -532 2782 2688 197 32 0 32 chr12 49078648 49078679 -95203810 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 107 99 0 0 chr12 49080028 49080180 -95202309 + GC_rich Low_complexity Low_complexity 1 152 0 220 356 0 34 chr12 49080883 49081053 -95201436 + GA-rich Low_complexity Low_complexity 1 164 0 22 0 0 0 chr12 49081174 49081196 -95201293 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 49081230 49081253 -95201236 + GC_rich Low_complexity Low_complexity 1 23 0 46 48 0 0 chr12 49081269 49081331 -95201158 + GC_rich Low_complexity Low_complexity 1 62 0 417 250 19 0 chr12 49082733 49082837 -95199652 + MIR SINE MIR 111 216 -46 202 296 0 52 chr12 49084372 49084487 -95198002 + G-rich Low_complexity Low_complexity 3 111 0 321 253 11 46 chr12 49086369 49086604 -95195885 + C-rich Low_complexity Low_complexity 1 226 0 29 28 0 0 chr12 49086758 49086794 -95195695 + GC_rich Low_complexity Low_complexity 1 36 0 438 276 19 58 chr12 49087157 49087414 -95195075 - L1MEd LINE L1 -4864 1255 1009 284 297 0 0 chr12 49087489 49087627 -95194862 + C-rich Low_complexity Low_complexity 1 138 0 281 186 20 39 chr12 49087642 49087744 -95194745 + C-rich Low_complexity Low_complexity 5 104 0 28 29 0 0 chr12 49087744 49087779 -95194710 + GC_rich Low_complexity Low_complexity 1 35 0 467 317 0 16 chr12 49087780 49088037 -95194452 + C-rich Low_complexity Low_complexity 1 252 0 450 299 14 11 chr12 49088444 49088665 -95193824 + MIR SINE MIR 2 262 0 216 158 0 0 chr12 49088825 49088863 -95193626 + T-rich Low_complexity Low_complexity 1 38 0 211 269 28 64 chr12 49088868 49089009 -95193480 + CT-rich Low_complexity Low_complexity 3 138 0 232 164 30 15 chr12 49089021 49089088 -95193401 + T-rich Low_complexity Low_complexity 1 68 0 265 322 11 11 chr12 49089103 49089193 -95193296 + CT-rich Low_complexity Low_complexity 5 94 0 207 162 0 0 chr12 49089268 49089305 -95193184 + C-rich Low_complexity Low_complexity 2 38 0 207 222 25 12 chr12 49090184 49090265 -95192224 + T-rich Low_complexity Low_complexity 2 83 0 31 68 0 0 chr12 49090321 49090380 -95192109 + GC_rich Low_complexity Low_complexity 1 59 0 281 208 42 42 chr12 49090394 49090490 -95191999 + C-rich Low_complexity Low_complexity 4 99 0 1565 185 20 7 chr12 49090696 49091163 -95191326 - AluJo SINE Alu 0 312 1 403 310 6 29 chr12 49091835 49092009 -95190480 + G-rich Low_complexity Low_complexity 5 174 0 24 32 0 0 chr12 49092011 49092042 -95190447 + GC_rich Low_complexity Low_complexity 1 31 0 5437 64 1 3 chr12 49092176 49092881 -95189608 + L1P LINE L1 2135 2838 -3308 315 145 12 48 chr12 49092884 49092967 -95189522 - L1P LINE L1 -1437 4709 4630 1528 181 16 43 chr12 49093418 49093721 -95188768 + AluJo SINE Alu 1 295 -17 434 285 26 20 chr12 49095192 49095430 -95187059 + C-rich Low_complexity Low_complexity 1 239 0 196 258 11 101 chr12 49096106 49096195 -95186294 - L2 LINE L2 -188 3084 3004 2042 140 0 10 chr12 49096268 49096561 -95185928 + AluSx SINE Alu 1 290 -22 2364 201 72 70 chr12 49096792 49097247 -95185242 + L1M4 LINE L1 4065 4524 -1622 664 79 50 0 chr12 49097247 49097348 -95185141 + L1PB2 LINE L1 6044 6149 -2 2364 201 72 70 chr12 49097348 49097638 -95184851 + L1M4 LINE L1 4524 4812 -1334 4476 162 10 7 chr12 49097714 49098860 -95183629 - L1MA8 LINE L1 -288 6003 4854 1912 147 3 19 chr12 49098860 49099208 -95183281 - MER4A LTR ERV1 0 664 264 258 132 0 0 chr12 49099211 49099249 -95183240 - MER4A LTR ERV1 -566 98 61 22 0 0 0 chr12 49100717 49100739 -95181750 + AT_rich Low_complexity Low_complexity 1 22 0 274 288 0 0 chr12 49101083 49101149 -95181340 + LTR67 LTR ERVL 19 84 -473 612 143 0 0 chr12 49101904 49102002 -95180487 + L1PB4 LINE L1 6050 6147 -9 22 0 0 0 chr12 49102020 49102042 -95180447 + AT_rich Low_complexity Low_complexity 1 22 0 17545 123 2 3 chr12 49102310 49105783 -95176706 + L1PA8A LINE L1 2645 6114 -17 1211 294 86 34 chr12 49106070 49106770 -95175719 - L1 LINE L1 -896 5250 4463 947 58 0 0 chr12 49106770 49106890 -95175599 - L1PA4 LINE L1 0 6155 6036 1211 294 86 34 chr12 49106890 49107225 -95175264 - L1 LINE L1 -1683 4463 4147 1642 138 3 70 chr12 49107435 49107747 -95174742 - MER4-int LTR ERV1 -4 6594 6304 40371 50 2 0 chr12 49107748 49112715 -95169774 + L1P LINE L1 347 5323 -823 1136 184 21 13 chr12 49112847 49113080 -95169409 + AluJo SINE Alu 78 312 0 212 0 0 35 chr12 49113089 49113118 -95169371 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 270 0 0 0 chr12 49113602 49113632 -95168857 + (TA)n Simple_repeat Simple_repeat 2 31 0 190 296 0 0 chr12 49113885 49113929 -95168560 - L2 LINE L2 -19 3253 3210 216 316 31 10 chr12 49114053 49114151 -95168338 - MIR SINE MIR -114 148 49 892 318 136 17 chr12 49114569 49115387 -95167102 - L2 LINE L2 -218 3054 2149 347 56 19 0 chr12 49115387 49115441 -95167048 + (GAGAA)n Simple_repeat Simple_repeat 4 58 0 2784 175 38 38 chr12 49117431 49118008 -95164481 - L1MB8 LINE L1 -104 6074 5498 551 147 39 54 chr12 49118008 49118137 -95164352 + L1PA16 LINE L1 6031 6157 -9 1438 260 37 29 chr12 49118170 49118681 -95163808 - L1MB8 LINE L1 -834 5312 4798 * 1529 185 7 16 chr12 49118676 49118984 -95163505 + L1 LINE L1 4553 4857 -1289 618 102 20 20 chr12 49118984 49119082 -95163407 + MER4A LTR ERV1 1 98 -566 864 152 5 28 chr12 49119082 49119284 -95163205 + MER4A LTR ERV1 261 516 -148 3168 84 0 71 chr12 49119284 49119760 -95162729 + MLT2A1 LTR ERVL 1 442 -2 36792 78 13 2 chr12 49119762 49125356 -95157133 + HERVL-A1 LTR ERVL 1 5654 0 3143 80 9 52 chr12 49125356 49125820 -95156669 + MLT2A1 LTR ERVL 1 444 0 845 127 33 13 chr12 49125820 49125970 -95156519 + MER4A LTR ERV1 512 664 0 2595 249 120 55 chr12 49125973 49126732 -95155757 + MER4A-int LTR ERV1 1 808 -5790 216 0 0 0 chr12 49126733 49126757 -95155732 + (CA)n Simple_repeat Simple_repeat 2 25 0 228 178 0 44 chr12 49126828 49126873 -95155616 + LTR49 LTR ERV1 271 313 -282 841 115 22 0 chr12 49126893 49127032 -95155457 + MER4A-int LTR ERV1 993 1134 -5464 1445 146 3 93 chr12 49127048 49127370 -95155119 + MER4A LTR ERV1 372 664 0 956 92 0 0 chr12 49127375 49127516 -95154973 + MER4A-int LTR ERV1 2355 2495 -4103 1065 191 89 0 chr12 49127516 49127752 -95154737 - LTR8 LTR ERV1 -434 257 1 3515 147 72 34 chr12 49127752 49128662 -95153827 + MER4-int LTR ERV1 2737 3681 -2917 464 245 21 62 chr12 49128731 49128923 -95153566 + LTR4 LTR ERV1 16 199 -397 808 205 35 50 chr12 49129114 49129397 -95153092 + LTR4 LTR ERV1 318 596 0 13657 108 48 14 chr12 49129401 49131753 -95150736 + MER4-int LTR ERV1 3882 6313 -285 2042 138 10 10 chr12 49131753 49132051 -95150438 - AluSg SINE Alu -12 298 1 24 0 0 0 chr12 49132064 49132088 -95150401 + AT_rich Low_complexity Low_complexity 1 24 0 7348 28 0 0 chr12 49132094 49133216 -95149273 - L1PA4 LINE L1 -1 6154 5019 3588 38 0 0 chr12 49133216 49133667 -95148822 + L1PA4 LINE L1 4572 5022 -1124 904 233 0 5 chr12 49133704 49133893 -95148596 + MER5A DNA MER1_type 1 188 -1 27 0 0 0 chr12 49134747 49134774 -95147715 + AT_rich Low_complexity Low_complexity 1 27 0 2333 98 3 3 chr12 49134820 49135125 -95147364 + AluSx SINE Alu 7 311 -1 2631 123 145 45 chr12 49135231 49135783 -95146706 + LTR18B LTR ERVL 1 607 -7 407 269 114 12 chr12 49135793 49135960 -95146529 + MIR SINE MIR 49 232 -30 359 256 35 52 chr12 49136872 49137044 -95145445 + LTR33A LTR ERVL 353 521 -2 1085 115 11 47 chr12 49137095 49137286 -95145203 + AluSg/x SINE Alu 129 312 0 555 303 79 35 chr12 49137383 49137673 -95144816 + HAL1 LINE L1 820 1122 -1385 739 258 127 14 chr12 49137765 49137978 -95144511 - MIR SINE MIR -24 238 2 386 281 138 43 chr12 49137987 49138428 -95144061 + HAL1 LINE L1 1170 1652 -855 491 90 0 0 chr12 49139627 49139694 -95142795 - MER30 DNA MER1_type 0 230 164 355 273 36 27 chr12 49139882 49139992 -95142497 - L2 LINE L2 -4 3268 3158 391 293 91 120 chr12 49140183 49140742 -95141747 + HAL1 LINE L1 2 544 -1963 1710 177 135 21 chr12 49140763 49141147 -95141342 + MSTA LTR MaLR 1 428 0 2723 182 18 27 chr12 49141268 49142358 -95140131 + L1MB8 LINE L1 4908 6178 0 1044 269 130 53 chr12 49142387 49143735 -95138754 + HAL1 LINE L1 826 2364 -143 204 125 0 0 chr12 49144221 49144253 -95138236 + (A)n Simple_repeat Simple_repeat 1 32 0 230 230 92 58 chr12 49145775 49145862 -95136627 - L2 LINE L2 -5 3308 3219 267 364 14 21 chr12 49145946 49146086 -95136403 - L2 LINE L2 -218 3054 2916 728 291 58 33 chr12 49146794 49147035 -95135454 + MIR SINE MIR 16 262 0 244 221 132 15 chr12 49148072 49148140 -95134349 + MER69 DNA AcHobo 1 76 -2450 1539 93 0 0 chr12 49148221 49148436 -95134053 - HERVK14 LTR ERVK -5730 215 1 4730 64 19 0 chr12 49148436 49149030 -95133459 - LTR14B LTR ERVK 0 608 4 457 200 20 0 chr12 49149331 49149431 -95133058 + MLT1E1 LTR MaLR 18 119 -535 1909 166 36 24 chr12 49149486 49149897 -95132592 - L1MA4 LINE L1 0 6300 5885 212 385 0 11 chr12 49150032 49150123 -95132366 - MER5B DNA MER1_type -87 91 2 522 241 42 112 chr12 49150385 49150833 -95131656 - MER31-int LTR ERV1 -1914 3022 2606 21008 152 27 11 chr12 49150834 49158424 -95124065 + L1MA3 LINE L1 10 7724 0 198 0 0 0 chr12 49159335 49159357 -95123132 + (CA)n Simple_repeat Simple_repeat 2 23 0 183 80 0 0 chr12 49159356 49159381 -95123108 + (CG)n Simple_repeat Simple_repeat 2 26 0 * 1322 203 69 24 chr12 49159451 49159786 -95122703 + MLT1A1 LTR MaLR 1 350 -15 3127 200 34 5 chr12 49159786 49160437 -95122052 + MLT1A1-int LTR MaLR 106 775 -960 1981 206 62 93 chr12 49160432 49161142 -95121347 + MLT1A1-int LTR MaLR 1048 1735 0 * 1985 165 43 3 chr12 49161149 49161500 -95120989 + MLT1A1 LTR MaLR 1 365 0 1875 92 0 0 chr12 49162322 49162571 -95119918 + L1PA7 LINE L1 5903 6151 -3 396 176 69 29 chr12 49163464 49163566 -95118923 + L2 LINE L2 3202 3307 -6 1963 132 31 0 chr12 49163566 49163853 -95118636 + AluSx SINE Alu 1 296 -16 230 259 130 56 chr12 49163932 49164040 -95118449 - MIR SINE MIR -91 171 56 1471 189 99 10 chr12 49164345 49164657 -95117832 - MER58B DNA MER1_type -1 340 1 3164 226 45 34 chr12 49165955 49166781 -95115708 - MER21B LTR ERV1 -16 847 13 271 153 20 0 chr12 49166951 49167011 -95115478 - MIR SINE MIR -71 137 87 440 274 137 11 chr12 49167142 49167317 -95115172 - MIR SINE MIR -1 261 65 1911 199 89 17 chr12 49168841 49169304 -95113185 - LTR44 LTR ERV1 0 519 24 186 325 103 34 chr12 49169690 49169807 -95112682 - L2 LINE L2 -10 3303 3179 1275 98 6 6 chr12 49169816 49169989 -95112500 - AluSq SINE Alu -18 295 123 1084 186 14 34 chr12 49170162 49170457 -95112032 - AluSq SINE Alu -16 297 9 233 266 31 16 chr12 49170842 49170906 -95111583 - MER5B DNA MER1_type -1 177 113 1523 199 59 21 chr12 49170912 49171299 -95111190 + L1MC4 LINE L1 7413 7814 -228 2007 124 6 30 chr12 49171300 49171630 -95110859 - MER1B DNA MER1_type -17 322 1 364 122 51 122 chr12 49171631 49171729 -95110760 + L1MC4 LINE L1 7821 7911 -131 242 254 0 0 chr12 49171746 49171809 -95110680 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 324 216 26 0 chr12 49171810 49171906 -95110583 + L1MC4 LINE L1 7896 8042 0 556 230 9 0 chr12 49171913 49172026 -95110463 - MER5B DNA MER1_type -64 114 1 23 0 0 0 chr12 49172517 49172540 -95109949 + AT_rich Low_complexity Low_complexity 1 23 0 489 285 15 0 chr12 49172839 49172976 -95109513 - MLT1L LTR MaLR -339 276 138 183 292 25 75 chr12 49173234 49173354 -95109135 + MIR3 SINE MIR 61 174 -34 360 265 47 20 chr12 49173659 49173760 -95108729 + MIR3 SINE MIR 78 182 -26 1040 191 74 39 chr12 49173898 49174181 -95108308 + L1MC1 LINE L1 1 293 -6133 1180 219 16 8 chr12 49174181 49174428 -95108061 + AluJb SINE Alu 55 303 -9 2447 80 0 6 chr12 49174440 49174753 -95107736 + AluY SINE Alu 1 311 0 5638 184 28 12 chr12 49174753 49176666 -95105823 + L1MC1 LINE L1 4652 6605 -8 2083 129 0 3 chr12 49176666 49176969 -95105520 - AluSx SINE Alu -8 304 3 582 281 190 9 chr12 49178876 49179097 -95103392 + MIR SINE MIR 2 262 0 2470 179 58 0 chr12 49179720 49180238 -95102251 - L1MC1 LINE L1 -88 6245 5698 227 167 111 0 chr12 49180244 49180316 -95102173 - L1MCa LINE L1 -4531 1895 1816 67 98 0 0 chr12 49180323 49180537 -95101952 + AT_rich Low_complexity Low_complexity 1 214 0 1952 119 68 17 chr12 49180558 49180734 -95101755 - L1MCa LINE L1 -4830 1596 1430 189 0 0 0 chr12 49180734 49180755 -95101734 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1952 119 68 17 chr12 49180755 49180991 -95101498 - L1MCa LINE L1 -4996 1430 1163 379 152 11 65 chr12 49180958 49181050 -95101439 - L1MCa LINE L1 -6319 107 21 * 498 284 72 14 chr12 49181660 49181938 -95100551 + L1ME4a LINE L1 5588 5881 -240 2483 43 7 13 chr12 49181952 49182254 -95100235 + AluY SINE Alu 1 300 -11 6952 22 3 0 chr12 49182269 49183134 -95099355 - L1PA2 LINE L1 -1073 5073 4206 7898 13 0 0 chr12 49183134 49184214 -95098275 + L1PA2 LINE L1 5073 6152 -3 31 58 0 0 chr12 49184214 49184266 -95098223 + AT_rich Low_complexity Low_complexity 1 52 0 324 217 183 29 chr12 49184278 49184453 -95098036 + L1ME4a LINE L1 5900 6101 -20 194 194 0 0 chr12 49185598 49185634 -95096855 - L2 LINE L2 -1 3271 3236 402 39 0 0 chr12 49185805 49185857 -95096632 + (TG)n Simple_repeat Simple_repeat 2 53 0 352 233 15 0 chr12 49185978 49186084 -95096405 - L1 LINE L1 -841 5305 5194 300 337 33 0 chr12 49186217 49186309 -95096180 + L2 LINE L2 2688 2782 -532 230 308 107 47 chr12 49186797 49186966 -95095523 - MIR SINE MIR -15 247 69 491 313 0 14 chr12 49188152 49188299 -95094190 - L2 LINE L2 -515 2799 2655 1696 226 64 45 chr12 49188299 49188898 -95093591 + MLT1E2 LTR MaLR 1 626 0 365 280 280 5 chr12 49188898 49189112 -95093377 - L2 LINE L2 -667 2647 2375 216 416 19 7 chr12 49189115 49189269 -95093220 - L2 LINE L2 -470 2844 2689 3573 184 55 59 chr12 49190153 49191104 -95091385 + L1MD2 LINE L1 5413 6359 0 745 214 87 0 chr12 49191141 49191314 -95091175 - MER5A DNA MER1_type 0 189 2 2851 34 9 0 chr12 49191435 49191784 -95090705 - L1PA4 LINE L1 0 6155 5804 2259 186 26 13 chr12 49191920 49192378 -95090111 - MLT1C LTR MaLR 0 467 4 23 0 0 0 chr12 49193121 49193144 -95089345 + AT_rich Low_complexity Low_complexity 1 23 0 552 300 101 49 chr12 49193767 49194154 -95088335 + LTR16B LTR ERVL 41 447 -17 855 169 151 6 chr12 49194872 49195038 -95087451 - AluJo SINE Alu -113 199 10 2299 80 3 19 chr12 49195339 49195651 -95086838 - AluY SINE Alu -4 307 1 21 57 0 0 chr12 49196250 49196285 -95086204 + AT_rich Low_complexity Low_complexity 1 35 0 276 30 0 0 chr12 49196315 49196348 -95086141 + (TG)n Simple_repeat Simple_repeat 2 34 0 810 177 21 43 chr12 49196689 49196875 -95085614 - MER3 DNA MER1_type 0 209 28 1858 151 10 7 chr12 49196877 49197181 -95085308 + AluSx SINE Alu 1 305 -7 266 323 13 65 chr12 49197247 49197402 -95085087 - MIR SINE MIR -113 149 3 2242 125 0 0 chr12 49197452 49197756 -95084733 + AluSg SINE Alu 1 304 -6 612 250 21 0 chr12 49197781 49197925 -95084564 + AluJo SINE Alu 122 268 -44 378 259 36 18 chr12 49198168 49198280 -95084209 + MIR SINE MIR 31 144 -64 570 262 233 19 chr12 49199360 49199673 -95082816 - MLT1L LTR MaLR -235 380 1 295 326 50 14 chr12 49199673 49199814 -95082675 - MIR SINE MIR -83 179 34 248 328 34 25 chr12 49200253 49200372 -95082117 - MIR SINE MIR -58 150 31 2941 69 0 0 chr12 49200905 49201280 -95081209 - L1PA7 LINE L1 -15 6139 5765 648 266 99 25 chr12 49201596 49201878 -95080611 + MER41E LTR ERV1 200 502 -10 1935 165 14 11 chr12 49203258 49203609 -95078880 + MLT1A1 LTR MaLR 14 365 0 235 331 32 24 chr12 49206633 49206757 -95075732 - MIR SINE MIR -67 141 17 504 277 45 17 chr12 49207579 49207756 -95074733 + L2 LINE L2 2520 2701 -613 2860 6 0 0 chr12 49207760 49208071 -95074418 - AluYa5 SINE Alu 0 311 1 736 171 5 48 chr12 49208172 49208382 -95074107 - Charlie1 DNA MER1_type -4 2757 2557 1527 162 23 23 chr12 49208454 49208719 -95073770 - AluJb SINE Alu -46 266 2 901 183 29 5 chr12 49208720 49208928 -95073561 - Charlie1 DNA MER1_type -206 2555 2343 2279 104 0 31 chr12 49210847 49211165 -95071324 + AluY SINE Alu 1 308 -3 198 336 124 0 chr12 49211360 49211473 -95071016 - L2 LINE L2 -673 2641 2515 192 77 0 0 chr12 49212232 49212258 -95070231 + (CAATT)n Simple_repeat Simple_repeat 2 27 0 1808 149 17 40 chr12 49212745 49213047 -95069442 - AluJo SINE Alu -17 295 1 242 200 212 24 chr12 49214389 49214474 -95068015 - L2 LINE L2 -3 3310 3210 402 278 15 30 chr12 49215642 49215775 -95066714 + MIR3 SINE MIR 13 143 -65 1147 80 0 0 chr12 49215838 49215988 -95066501 + L1PA5 LINE L1 5997 6146 -8 25 0 0 0 chr12 49215990 49216015 -95066474 + AT_rich Low_complexity Low_complexity 1 25 0 685 200 0 0 chr12 49216492 49216607 -95065882 + FLAM_A SINE Alu 1 115 -18 244 196 0 0 chr12 49216654 49216705 -95065784 + Alu SINE Alu 247 297 -5 633 192 104 6 chr12 49216787 49216969 -95065520 - Charlie1 DNA MER1_type -388 2373 2174 3335 161 54 2 chr12 49217004 49217620 -95064869 - L1PB4 LINE L1 -7 6149 5502 844 278 77 46 chr12 49217818 49218090 -95064399 + L1ME4a LINE L1 5269 5531 -590 2107 152 157 16 chr12 49218090 49218531 -95063958 - MLT1D LTR MaLR 0 505 3 844 278 77 46 chr12 49218531 49218734 -95063755 + L1ME4a LINE L1 5531 5770 -351 1777 169 10 24 chr12 49218734 49219029 -95063460 - AluJb SINE Alu -21 291 1 844 278 77 46 chr12 49219029 49219184 -95063305 + L1ME4a LINE L1 5770 5919 -202 41 58 0 0 chr12 49219189 49219258 -95063231 + AT_rich Low_complexity Low_complexity 1 69 0 2349 223 91 12 chr12 49220237 49220625 -95061864 + MLT1E1 LTR MaLR 1 456 -198 3656 114 99 5 chr12 49220625 49221222 -95061267 + MER39B LTR ERV1 1 653 0 2349 223 91 12 chr12 49221222 49221439 -95061050 + MLT1E1 LTR MaLR 456 654 0 270 0 0 0 chr12 49222172 49222202 -95060287 + (CA)n Simple_repeat Simple_repeat 1 30 0 17109 94 3 14 chr12 49222927 49226748 -95055741 - L1PA8 LINE L1 -6 6166 2391 267 54 0 0 chr12 49226761 49226798 -95055691 + (A)n Simple_repeat Simple_repeat 1 37 0 368 284 169 14 chr12 49227301 49227449 -95055040 + MER91A DNA MER1_type 1 171 -25 2599 32 0 19 chr12 49227968 49228279 -95054210 + AluY SINE Alu 2 306 -5 1375 202 89 0 chr12 49228580 49228828 -95053661 + AluJo SINE Alu 10 279 -33 692 99 12 56 chr12 49228832 49228993 -95053496 + (GGGAA)n Simple_repeat Simple_repeat 4 157 0 * 887 128 17 17 chr12 49228959 49229138 -95053351 + GA-rich Low_complexity Low_complexity 1 179 0 1871 164 13 19 chr12 49229633 49229943 -95052546 - AluJo SINE Alu -4 308 1 22 0 0 0 chr12 49230052 49230074 -95052415 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 49230095 49230116 -95052373 + AT_rich Low_complexity Low_complexity 1 21 0 2372 255 55 35 chr12 49230794 49231872 -95050617 + L1MEc LINE L1 1199 2297 -4099 15838 184 28 38 chr12 49231874 49234497 -95047992 + L1PA16 LINE L1 5 2576 -4273 2390 34 54 3 chr12 49234497 49234793 -95047696 + AluY SINE Alu 1 311 0 15838 184 28 38 chr12 49234793 49236275 -95046214 + L1PA16 LINE L1 2576 4072 -2777 1947 86 14 0 chr12 49236305 49236596 -95045893 + L1PA8 LINE L1 4117 4411 -1735 6950 68 1 2 chr12 49236596 49237966 -95044523 + L1PA8 LINE L1 4799 6172 0 395 81 0 0 chr12 49238024 49238086 -95044403 + L1MA4A LINE L1 6240 6301 -2 7324 194 23 26 chr12 49238309 49241081 -95041408 + L1PA16 LINE L1 4099 6867 -2 41959 42 3 3 chr12 49241098 49247246 -95035243 + L1PA4 LINE L1 2 6147 -8 1684 202 16 5 chr12 49247253 49247986 -95034503 + L1MDa LINE L1 2566 3390 -3150 21 0 0 0 chr12 49248026 49248047 -95034442 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr12 49248106 49248133 -95034356 + (T)n Simple_repeat Simple_repeat 1 27 0 832 121 29 58 chr12 49248142 49248316 -95034173 - Tigger7 DNA MER2_type -21 2466 2298 * 1328 209 77 14 chr12 49248312 49248609 -95033880 - Tigger7 DNA MER2_type -415 318 3 3015 225 35 19 chr12 49248611 49249476 -95033013 + L1M4 LINE L1 4265 5143 -1003 788 309 127 30 chr12 49250895 49251358 -95031131 - L2 LINE L2 0 3313 2806 227 254 45 0 chr12 49251373 49251440 -95031049 + Charlie1 DNA MER1_type 2 71 -2690 * 1134 148 9 5 chr12 49251438 49251648 -95030841 + Charlie1 DNA MER1_type 2343 2553 -208 1560 165 19 23 chr12 49251652 49251918 -95030571 + AluJb SINE Alu 2 266 -46 755 162 9 52 chr12 49251990 49252200 -95030289 + Charlie1 DNA MER1_type 2557 2757 -4 2844 7 0 0 chr12 49252301 49252611 -95029878 + AluYa5 SINE Alu 1 310 -1 954 269 36 17 chr12 49252618 49252919 -95029570 - L2 LINE L2 -613 2701 2395 2425 65 0 7 chr12 49252923 49253231 -95029258 - AluY SINE Alu -5 306 1 304 285 36 0 chr12 49253418 49253555 -95028934 + L1ME4a LINE L1 5961 6102 -19 29 0 0 0 chr12 49253753 49253782 -95028707 + AT_rich Low_complexity Low_complexity 1 29 0 1299 245 4 11 chr12 49255485 49255754 -95026735 + AluJo SINE Alu 16 282 -30 225 0 0 0 chr12 49255757 49255782 -95026707 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 209 350 33 17 chr12 49255804 49255924 -95026565 + MIR SINE MIR 126 247 -15 402 246 68 0 chr12 49256018 49256136 -95026353 + MIR3 SINE MIR 66 191 -17 26 64 0 0 chr12 49257711 49257758 -95024731 + AT_rich Low_complexity Low_complexity 1 47 0 789 292 142 46 chr12 49258103 49258582 -95023907 - L2 LINE L2 -8 3305 2773 801 279 48 31 chr12 49258634 49259050 -95023439 + MLT1J1 LTR MaLR 18 440 -6 783 295 93 12 chr12 49259049 49259381 -95023108 + MLT1J LTR MaLR 22 380 -131 * 7017 66 0 1 chr12 49259426 49260597 -95021892 + L1PA5 LINE L1 4977 6146 -8 210 174 0 0 chr12 49260608 49260654 -95021835 + A-rich Low_complexity Low_complexity 1 46 0 1213 276 104 43 chr12 49260751 49261280 -95021209 - L2 LINE L2 -543 2771 2211 658 233 149 43 chr12 49261971 49262255 -95020234 - MLT1D LTR MaLR -153 314 1 291 375 0 0 chr12 49262256 49262352 -95020137 - MER5A DNA MER1_type -7 182 87 444 257 158 7 chr12 49262597 49262749 -95019740 + MIR SINE MIR 88 262 0 684 173 164 24 chr12 49263046 49263327 -95019162 + MLT1B LTR MaLR 4 390 0 675 184 24 8 chr12 49264389 49264514 -95017975 + FLAM_C SINE Alu 5 131 -2 287 258 72 10 chr12 49264516 49264613 -95017876 + MIR SINE MIR 152 254 -8 25 75 0 0 chr12 49264655 49264708 -95017781 + AT_rich Low_complexity Low_complexity 1 53 0 4711 117 14 24 chr12 49265623 49266404 -95016085 + L1MA2 LINE L1 5532 6304 0 300 184 0 0 chr12 49267751 49267800 -95014689 - MER115 DNA AcHobo -159 534 486 328 368 26 0 chr12 49267959 49268076 -95014413 - MER115 DNA AcHobo -481 212 93 732 230 6 29 chr12 49268263 49268437 -95014052 + MER20 DNA MER1_type 1 170 -49 305 106 0 0 chr12 49268458 49268505 -95013984 + MADE1 DNA Mariner 34 80 0 205 273 0 0 chr12 49268623 49268667 -95013822 + (CA)n Simple_repeat Simple_repeat 1 44 0 581 264 56 97 chr12 49269185 49269196 -95013293 - MLT1J1 LTR MaLR -47 399 389 270 0 0 0 chr12 49269196 49269226 -95013263 + (TAA)n Simple_repeat Simple_repeat 2 31 0 581 264 56 97 chr12 49269226 49269555 -95012934 - MLT1J1 LTR MaLR -57 389 73 26 50 0 0 chr12 49271563 49271603 -95010886 + AT_rich Low_complexity Low_complexity 1 40 0 468 308 116 22 chr12 49271669 49271893 -95010596 - MIR SINE MIR 0 262 18 333 0 0 0 chr12 49272518 49272555 -95009934 + (CA)n Simple_repeat Simple_repeat 2 38 0 469 268 75 117 chr12 49272783 49273105 -95009384 + MLT1L LTR MaLR 120 415 -200 1958 142 10 0 chr12 49273105 49273393 -95009096 - AluSx SINE Alu -19 293 3 469 268 75 117 chr12 49273393 49273566 -95008923 + MLT1L LTR MaLR 415 594 -21 263 130 130 14 chr12 49273573 49273642 -95008847 - MER116 DNA Mariner 0 80 4 697 228 122 11 chr12 49273774 49273963 -95008526 + MER63A DNA MER1_type 1 210 0 27 49 0 0 chr12 49274135 49274176 -95008313 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr12 49274353 49274385 -95008104 + AT_rich Low_complexity Low_complexity 1 32 0 705 317 53 12 chr12 49275080 49275326 -95007163 - MIR SINE MIR 0 262 7 376 385 16 11 chr12 49275369 49275556 -95006933 + L2 LINE L2 2543 2730 -584 183 300 100 0 chr12 49275880 49275930 -95006559 - L2 LINE L2 -97 3175 3121 1960 129 0 21 chr12 49276081 49276367 -95006122 + AluSx SINE Alu 1 280 -32 985 110 7 0 chr12 49276401 49276555 -95005934 + MER41B LTR ERV1 481 635 0 874 177 7 15 chr12 49276555 49276819 -95005670 + MER41B-int LTR ERV1 1 358 -5588 957 113 0 0 chr12 49277624 49277757 -95004732 + AluSg/x SINE Alu 176 308 -4 1028 208 78 42 chr12 49278009 49278341 -95004148 - MER2 DNA MER2_type 0 344 1 541 279 51 6 chr12 49279000 49279158 -95003331 + L2 LINE L2 2068 2232 -1082 1948 163 6 10 chr12 49279272 49279585 -95002904 + AluJb SINE Alu 1 312 0 2584 103 76 8 chr12 49279727 49280124 -95002365 + MSTA LTR MaLR 5 428 0 1123 246 164 0 chr12 49280567 49280969 -95001520 + MER110A LTR ERV1 1 468 0 2141 154 67 13 chr12 49281077 49281602 -95000887 - MER4A LTR ERV1 0 664 1 544 258 57 90 chr12 49283946 49284334 -94998155 - MLT1L LTR MaLR -34 581 207 689 264 112 15 chr12 49284893 49285090 -94997399 - MIR SINE MIR -12 250 35 429 310 67 32 chr12 49285274 49285521 -94996968 - L2 LINE L2 0 3313 3053 2346 117 0 0 chr12 49285521 49285828 -94996661 - AluSx SINE Alu -5 307 1 429 310 67 32 chr12 49285828 49285864 -94996625 - L2 LINE L2 -260 3053 3020 274 211 0 18 chr12 49286922 49286979 -94995510 - L2 LINE L2 -78 3235 3180 778 260 62 72 chr12 49286980 49287465 -94995024 + L1M4 LINE L1 3759 4238 -1908 1188 213 61 78 chr12 49287468 49288062 -94994427 + LTR24B LTR ERV1 1 635 0 1170 281 90 32 chr12 49288065 49289138 -94993351 + L1M4 LINE L1 4243 5378 -768 23 92 0 0 chr12 49290274 49290339 -94992150 + AT_rich Low_complexity Low_complexity 1 65 0 2048 143 0 0 chr12 49290842 49291122 -94991367 + AluSx SINE Alu 1 280 -32 997 57 14 7 chr12 49291122 49291263 -94991226 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 554 265 80 98 chr12 49291465 49292470 -94990019 - L1M4 LINE L1 -1301 4845 3859 2218 122 0 0 chr12 49292471 49292774 -94989715 + AluSg SINE Alu 1 303 -7 1343 254 45 71 chr12 49292872 49293434 -94989055 - MER77 LTR ERV1 -6 599 53 902 276 6 3 chr12 49293461 49293772 -94988717 - L1M4 LINE L1 -2284 3862 3551 368 268 62 0 chr12 49293842 49293954 -94988535 - L1M4 LINE L1 -2202 3944 3826 22 56 0 0 chr12 49293996 49294032 -94988457 + AT_rich Low_complexity Low_complexity 1 36 0 27 81 0 0 chr12 49294060 49294122 -94988367 + AT_rich Low_complexity Low_complexity 1 62 0 1309 229 32 42 chr12 49294164 49294570 -94987919 - MLT1C LTR MaLR -13 454 53 928 211 84 92 chr12 49294954 49295347 -94987142 - MSTD LTR MaLR -1 395 6 28 29 0 0 chr12 49295525 49295560 -94986929 + AT_rich Low_complexity Low_complexity 1 35 0 1795 180 17 0 chr12 49296469 49296780 -94985709 - AluJb SINE Alu 0 312 1 1905 204 83 34 chr12 49297050 49297545 -94984944 + LTR40a LTR ERVL 1 519 0 2263 130 25 3 chr12 49297572 49297927 -94984562 - THE1B LTR MaLR -1 363 1 216 231 58 0 chr12 49298896 49298948 -94983541 + L2 LINE L2 3259 3313 0 304 275 2 7 chr12 49298964 49299069 -94983420 - MLT1J2 LTR MaLR -244 202 100 329 115 49 0 chr12 49299148 49299209 -94983280 - THE1B LTR MaLR 0 364 301 * 1862 152 101 24 chr12 49299199 49299574 -94982915 - MSTA LTR MaLR -24 404 1 8716 137 47 69 chr12 49299574 49301262 -94981227 - MSTA-int LTR MaLR 0 1651 1 2038 124 97 58 chr12 49301262 49301674 -94980815 - MSTA LTR MaLR 0 428 1 455 254 54 54 chr12 49302228 49302413 -94980076 + MLT1J2 LTR MaLR 264 448 -2 267 284 128 14 chr12 49302431 49302572 -94979917 + L2 LINE L2 665 821 -2493 793 355 116 24 chr12 49302712 49303939 -94978550 + L2 LINE L2 1352 2763 -509 2020 184 41 0 chr12 49303939 49304326 -94978163 - MER57A LTR ERV1 0 403 1 793 355 116 24 chr12 49304326 49304652 -94977837 + L2 LINE L2 2763 3058 -214 279 273 82 27 chr12 49304799 49304909 -94977580 + L2 LINE L2 2625 2740 -574 3109 98 8 38 chr12 49305089 49305590 -94976899 + LTR15 LTR ERV1 1 486 -7 42176 39 3 1 chr12 49305983 49312125 -94970364 + L1PA4 LINE L1 1 6152 -3 474 188 71 14 chr12 49312272 49312485 -94970004 - LTR54 LTR ERV1 -8 395 201 * 1333 100 86 0 chr12 49312468 49312688 -94969801 - LTR54 LTR ERV1 -271 239 1 1119 238 46 32 chr12 49312691 49313001 -94969488 - MER39 LTR ERV1 0 707 254 2103 53 0 26 chr12 49313001 49313266 -94969223 + AluY SINE Alu 49 306 -5 1119 238 46 32 chr12 49313266 49313344 -94969145 - MER39 LTR ERV1 -453 254 179 2111 137 0 0 chr12 49313808 49314101 -94968388 - AluSq SINE Alu -20 293 1 341 219 8 31 chr12 49314715 49314843 -94967646 + GA-rich Low_complexity Low_complexity 2 126 0 271 291 206 14 chr12 49315543 49315682 -94966807 + MIR SINE MIR 9 171 -63 477 306 88 0 chr12 49315975 49316122 -94966367 + MIR SINE MIR 32 191 -71 812 256 10 0 chr12 49316130 49316329 -94966160 + MIR SINE MIR 52 252 -10 498 285 298 5 chr12 49317523 49317682 -94964807 - L2 LINE L2 -1 3312 3201 354 45 0 0 chr12 49317682 49317726 -94964763 + (GGGTG)n Simple_repeat Simple_repeat 4 47 0 498 285 298 5 chr12 49317726 49317949 -94964540 - L2 LINE L2 -112 3201 2818 385 237 214 15 chr12 49317976 49318107 -94964382 + MER5B DNA MER1_type 9 165 -13 * 1143 234 63 9 chr12 49318102 49318435 -94964054 - L2 LINE L2 -582 2732 2382 248 327 262 10 chr12 49320187 49320389 -94962100 + L2 LINE L2 2998 3250 -22 198 71 0 0 chr12 49320398 49320426 -94962063 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 493 274 183 5 chr12 49320775 49320983 -94961506 + MIR SINE MIR 18 262 0 21 0 0 0 chr12 49321765 49321786 -94960703 + AT_rich Low_complexity Low_complexity 1 21 0 304 333 58 23 chr12 49322207 49322378 -94960111 + MIR SINE MIR 73 249 -13 21 0 0 0 chr12 49323210 49323231 -94959258 + AT_rich Low_complexity Low_complexity 1 21 0 184 237 0 0 chr12 49323237 49323275 -94959214 + MER5B DNA MER1_type 65 102 -76 21 0 0 0 chr12 49323609 49323630 -94958859 + AT_rich Low_complexity Low_complexity 1 21 0 264 339 57 0 chr12 49324363 49324487 -94958002 - L3 LINE CR1 -1 1576 1446 274 247 165 24 chr12 49324541 49324626 -94957863 + MIR3 SINE MIR 77 173 -35 265 252 92 17 chr12 49324981 49325100 -94957389 + L2 LINE L2 1922 2049 -1265 281 243 59 59 chr12 49325190 49325326 -94957163 + MIR3 SINE MIR 61 196 -12 357 267 11 11 chr12 49325439 49325529 -94956960 - MIR3 SINE MIR -29 179 90 216 0 0 0 chr12 49328606 49328630 -94953859 + (TTG)n Simple_repeat Simple_repeat 2 25 0 34 84 0 0 chr12 49329019 49329102 -94953387 + GC_rich Low_complexity Low_complexity 1 83 0 329 154 44 0 chr12 49330035 49330126 -94952363 + CT-rich Low_complexity Low_complexity 2 96 0 495 252 73 8 chr12 49331426 49331549 -94950940 + L2 LINE L2 3178 3308 -5 339 292 87 38 chr12 49331650 49331835 -94950654 + MLT1K LTR MaLR 395 588 0 447 237 0 0 chr12 49331846 49331943 -94950546 - MIR SINE MIR -2 260 164 464 313 45 25 chr12 49331965 49332163 -94950326 + L3b LINE CR1 1281 1482 -101 1851 112 16 47 chr12 49333195 49333318 -94949171 - L1MB7 LINE L1 -20 6164 6039 2256 138 33 25 chr12 49333318 49333681 -94948808 - MER47A DNA MER2_type 0 366 1 1851 112 16 47 chr12 49333681 49333878 -94948611 - L1MB7 LINE L1 -145 6039 5854 1987 136 0 26 chr12 49334118 49334426 -94948063 + AluSx SINE Alu 1 300 -12 306 300 0 12 chr12 49335252 49335332 -94947157 - L2 LINE L2 -5 3308 3230 207 0 0 0 chr12 49335625 49335648 -94946841 + (A)n Simple_repeat Simple_repeat 1 23 0 235 326 41 0 chr12 49336531 49336629 -94945860 - MIR SINE MIR -70 192 91 321 377 26 21 chr12 49337213 49337404 -94945085 + MIR SINE MIR 21 212 -50 25 0 0 0 chr12 49337844 49337869 -94944620 + AT_rich Low_complexity Low_complexity 1 25 0 2292 75 3 29 chr12 49338425 49338722 -94943767 + AluY SINE Alu 1 291 -20 345 47 0 0 chr12 49338722 49338765 -94943724 + (TA)n Simple_repeat Simple_repeat 1 43 0 2209 96 4 0 chr12 49339049 49339329 -94943160 - AluSx SINE Alu -23 289 9 6853 251 76 57 chr12 49339798 49344058 -94938431 - L1ME3 LINE L1 -81 6876 2590 1200 157 9 39 chr12 49344161 49344390 -94938099 - AluJo SINE Alu -5 307 86 644 276 150 46 chr12 49344421 49345159 -94937330 - L1ME3 LINE L1 -4733 2208 1395 25 51 0 0 chr12 49345669 49345708 -94936781 + AT_rich Low_complexity Low_complexity 1 39 0 221 275 83 64 chr12 49345794 49345903 -94936586 + L2 LINE L2 3158 3268 -4 306 316 60 17 chr12 49346358 49346475 -94936014 - MIR3 SINE MIR -77 131 10 25 23 0 23 chr12 49347723 49347748 -94934741 + AT_rich Low_complexity Low_complexity 1 26 -16 2354 67 20 0 chr12 49347748 49348046 -94934443 - AluY SINE Alu -7 304 1 25 23 0 23 chr12 49348046 49348063 -94934426 + AT_rich Low_complexity Low_complexity 26 42 0 2076 126 3 7 chr12 49350050 49350351 -94932138 + AluSx SINE Alu 1 300 -12 226 246 154 46 chr12 49350542 49350672 -94931817 + MIR3 SINE MIR 1 144 -64 2133 113 3 0 chr12 49350931 49351222 -94931267 + AluSp SINE Alu 3 294 -19 330 213 67 0 chr12 49351810 49351885 -94930604 - MER116 DNA Mariner 0 80 1 259 271 186 8 chr12 49351886 49352004 -94930485 + MIR SINE MIR 36 174 -88 566 320 7 19 chr12 49353537 49353756 -94928733 + MIR SINE MIR 43 258 -4 359 322 86 11 chr12 49355392 49355566 -94926923 - MIR3 SINE MIR -13 195 9 293 260 39 0 chr12 49357292 49357369 -94925120 + MIR SINE MIR 68 147 -115 2104 120 25 0 chr12 49357701 49357985 -94924504 + AluSx SINE Alu 1 291 -21 2496 88 0 0 chr12 49358615 49358922 -94923567 + AluSg SINE Alu 1 307 -3 429 294 8 8 chr12 49359746 49359865 -94922624 - L2 LINE L2 -4 3309 3191 3050 84 18 0 chr12 49359960 49360342 -94922147 - L1PA11 LINE L1 -2 6172 5784 3174 131 67 6 chr12 49360343 49360869 -94921620 + L1P LINE L1 4834 5391 -755 1825 161 40 3 chr12 49361014 49361313 -94921176 - AluJb SINE Alu -2 310 1 2046 116 24 10 chr12 49361402 49361694 -94920795 - AluSq SINE Alu -17 296 1 243 293 126 11 chr12 49362348 49362522 -94919967 - L1MC/D LINE L1 -2264 5544 5351 595 184 156 0 chr12 49362673 49362782 -94919707 + AluJb SINE Alu 2 127 -185 277 224 0 0 chr12 49363200 49363249 -94919240 + MER5B DNA MER1_type 1 49 -129 215 293 13 27 chr12 49363553 49363628 -94918861 - L2 LINE L2 -2 3270 3197 * 521 293 0 60 chr12 49363619 49363786 -94918703 + MER5B DNA MER1_type 22 178 0 1560 203 15 6 chr12 49365295 49365620 -94916869 - L1MB3 LINE L1 -1 6182 5855 300 304 30 30 chr12 49367195 49367330 -94915159 - MIR SINE MIR -3 259 125 1159 110 7 0 chr12 49367615 49367769 -94914720 + AluSq SINE Alu 1 155 -158 576 145 0 0 chr12 49367770 49367853 -94914636 + AluY SINE Alu 215 297 -14 373 241 276 6 chr12 49368074 49368244 -94914245 - MIR SINE MIR -19 243 28 1710 244 107 57 chr12 49369144 49369807 -94912682 - MER21B LTR ERV1 -156 707 12 849 183 0 0 chr12 49369959 49370090 -94912399 + FLAM_C SINE Alu 2 132 -1 22 0 0 0 chr12 49370090 49370112 -94912377 + AT_rich Low_complexity Low_complexity 1 22 0 2205 99 7 0 chr12 49370112 49370396 -94912093 + AluSq SINE Alu 1 286 -27 291 28 0 0 chr12 49370396 49370432 -94912057 + (CATA)n Simple_repeat Simple_repeat 2 37 0 635 251 117 25 chr12 49370992 49371231 -94911258 - MIR SINE MIR -1 261 1 263 91 0 23 chr12 49371514 49371558 -94910931 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2013 135 3 0 chr12 49371560 49371857 -94910632 - AluSx SINE Alu -14 298 1 906 151 0 0 chr12 49371860 49371986 -94910503 - AluJo/FLAM SINE Alu -176 126 1 2225 100 7 0 chr12 49372432 49372721 -94909768 + AluSc SINE Alu 1 291 -18 322 266 163 35 chr12 49373227 49373430 -94909059 - MIR SINE MIR -32 230 2 474 156 0 78 chr12 49373499 49373589 -94908900 - AluSg/x SINE Alu -21 289 207 189 0 0 0 chr12 49373622 49373643 -94908846 + (A)n Simple_repeat Simple_repeat 1 21 0 303 362 35 0 chr12 49373722 49373863 -94908626 + HAL1 LINE L1 1113 1258 -1249 888 65 14 7 chr12 49374056 49374194 -94908295 + (GAA)n Simple_repeat Simple_repeat 3 141 0 2426 83 3 0 chr12 49374617 49374918 -94907571 + AluSp SINE Alu 1 302 -11 281 296 34 0 chr12 49375201 49375289 -94907200 + L1MB3 LINE L1 2378 2468 -3916 5026 67 23 3 chr12 49375444 49376084 -94906405 + SVA Other Other 733 1385 -1 967 209 0 0 chr12 49376113 49376276 -94906213 - FRAM SINE Alu -16 160 1 1636 232 125 30 chr12 49376478 49376973 -94905516 + MER34 LTR ERV1 1 542 0 277 268 143 69 chr12 49377014 49377887 -94904602 + L1MB3 LINE L1 2912 3849 -2533 251 213 27 13 chr12 49378212 49378287 -94904202 - MLT1L LTR MaLR -14 601 526 1045 215 123 82 chr12 49378684 49379206 -94903283 + MER34C LTR ERV1 40 582 -3 23 0 0 0 chr12 49379247 49379270 -94903219 + AT_rich Low_complexity Low_complexity 1 23 0 1625 181 71 45 chr12 49379542 49380003 -94902486 - MER67A LTR ERV1 0 661 15 3150 207 150 37 chr12 49380980 49381840 -94900649 + MSTB2-int LTR MaLR 695 1651 0 1450 224 49 33 chr12 49381840 49382290 -94900199 + MSTB2 LTR MaLR 1 457 0 3607 192 31 7 chr12 49382291 49383109 -94899380 + L1MB3 LINE L1 4112 4948 -1434 2264 194 12 15 chr12 49383112 49383524 -94898965 + MSTB LTR MaLR 1 411 -15 558 150 0 20 chr12 49383530 49383630 -94898859 + MSTB1 LTR MaLR 329 426 -6 459 141 0 13 chr12 49383629 49383707 -94898782 + MSTB1 LTR MaLR 330 406 -26 * 5805 50 1 0 chr12 49383709 49384423 -94898066 - L1PA5 LINE L1 -2 6152 5438 264 119 24 0 chr12 49384424 49384466 -94898023 + MSTB1 LTR MaLR 384 426 0 1570 205 7 53 chr12 49384468 49384778 -94897711 + L1MB3 LINE L1 4949 5237 -1145 2124 154 29 75 chr12 49384778 49385257 -94897232 - MSTB2 LTR MaLR 0 457 1 1570 205 7 53 chr12 49385257 49385361 -94897128 + L1MB3 LINE L1 5237 5344 -1038 1560 169 10 35 chr12 49385404 49385725 -94896764 + AluJo SINE Alu 30 343 0 6292 126 40 5 chr12 49385783 49387343 -94895146 + L1MA4A LINE L1 4693 6297 -6 4332 166 39 39 chr12 49387329 49388364 -94894125 + L1MB3 LINE L1 5382 6419 0 * 1339 214 60 4 chr12 49388409 49388676 -94893813 - AluJo SINE Alu -30 282 1 227 200 15 0 chr12 49388685 49388750 -94893739 + L1ME4a LINE L1 6047 6112 -9 312 323 91 0 chr12 49388869 49388968 -94893521 - L2 LINE L2 -27 3286 3179 889 242 107 0 chr12 49388978 49389193 -94893296 - MIR SINE MIR -10 252 15 335 297 61 45 chr12 49389248 49389494 -94892995 - L2 LINE L2 -167 3105 2856 319 263 111 50 chr12 49390224 49390412 -94892077 + MIR SINE MIR 4 204 -58 595 191 34 45 chr12 49390558 49390736 -94891753 + MER104 DNA MER2_type 2 177 -3 363 44 0 0 chr12 49391176 49391221 -94891268 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 0 0 0 chr12 49391599 49391624 -94890865 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 557 219 0 0 chr12 49391764 49391869 -94890620 - LTR40a LTR ERVL -3 516 412 328 211 132 0 chr12 49391866 49391942 -94890547 - LTR40b LTR ERVL -376 86 1 * 2429 73 0 22 chr12 49392606 49392920 -94889569 - AluY SINE Alu -4 307 1 2243 102 0 13 chr12 49393036 49393339 -94889150 - AluSx SINE Alu -13 299 1 2497 199 87 16 chr12 49393353 49393961 -94888528 - L1MC4a LINE L1 -129 7679 7029 1786 247 45 9 chr12 49394019 49394470 -94888019 + MLT2B1 LTR ERVL 1 471 -49 2002 160 18 3 chr12 49394470 49394813 -94887676 - MER7A DNA MER2_type 0 346 1 208 179 26 0 chr12 49394825 49394864 -94887625 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 236 140 0 70 chr12 49394867 49394924 -94887565 + MLT2B1 LTR ERVL 464 516 -4 472 196 98 0 chr12 49394930 49395042 -94887447 - L1MC4a LINE L1 -1481 6327 6205 844 199 55 71 chr12 49395044 49395373 -94887116 + L2 LINE L2 2699 3024 -289 2242 100 0 13 chr12 49395392 49395693 -94886796 - AluSg SINE Alu -13 297 1 278 272 107 68 chr12 49395719 49395822 -94886667 + L2 LINE L2 3194 3300 -13 576 195 0 0 chr12 49395848 49395966 -94886523 - L1MA9 LINE L1 -4 6308 6191 268 175 0 18 chr12 49396258 49396315 -94886174 + L1ME4a LINE L1 6065 6120 -1 321 289 6 84 chr12 49397493 49397659 -94884830 + MLT1L LTR MaLR 1 153 -462 1587 233 42 11 chr12 49397660 49398042 -94884447 + MSTD LTR MaLR 1 394 -2 1030 222 36 8 chr12 49398042 49398294 -94884195 + MSTD-int LTR MaLR 2 260 -1475 285 200 69 35 chr12 49398319 49398464 -94884025 + (TAGA)n Simple_repeat Simple_repeat 1 150 0 1200 241 16 32 chr12 49398483 49398670 -94883819 + MSTD-int LTR MaLR 222 404 -1331 2141 125 20 0 chr12 49398670 49398794 -94883695 + AluSx SINE Alu 1 121 -191 186 43 0 0 chr12 49398794 49398817 -94883672 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2141 125 20 0 chr12 49398817 49398988 -94883501 + AluSx SINE Alu 121 302 -10 1200 241 16 32 chr12 49398988 49399115 -94883374 + MSTD-int LTR MaLR 404 531 -1204 11434 165 97 3 chr12 49399143 49401094 -94881395 - Tigger1 DNA MER2_type 0 2418 283 929 150 275 0 chr12 49401095 49401302 -94881187 + MER7A DNA MER2_type 54 315 -31 2156 226 49 79 chr12 49401319 49401953 -94880536 + MSTD-int LTR MaLR 531 1145 -590 * 4795 174 29 22 chr12 49401951 49402943 -94879546 - L1 LINE L1 -1314 4720 3722 2642 243 62 28 chr12 49402944 49404662 -94877827 - L1 LINE L1 -4576 1389 15 212 264 100 64 chr12 49404695 49404805 -94877684 - MIR SINE MIR -140 122 9 224 209 33 44 chr12 49405913 49406004 -94876485 + (CA)n Simple_repeat Simple_repeat 2 91 0 288 237 27 59 chr12 49406056 49406242 -94876247 + (CA)n Simple_repeat Simple_repeat 1 180 0 626 312 5 15 chr12 49406244 49406443 -94876046 + L2 LINE L2 2804 3000 -313 341 286 71 45 chr12 49406572 49406684 -94875805 - MIR3 SINE MIR -9 199 85 649 263 71 13 chr12 49406694 49406918 -94875571 - L2 LINE L2 0 3313 3077 1466 139 4 17 chr12 49408091 49408321 -94874168 - AluJb SINE Alu 0 312 86 368 248 46 28 chr12 49408869 49408978 -94873511 - MIR SINE MIR -64 144 34 249 293 114 56 chr12 49409565 49409889 -94872600 + L1MC4a LINE L1 5254 5596 -2212 261 0 0 0 chr12 49410533 49410562 -94871927 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 360 240 99 68 chr12 49410601 49410955 -94871534 + L1MC4a LINE L1 5592 5956 -1852 2226 95 0 0 chr12 49410981 49411265 -94871224 - AluSc SINE Alu -25 284 1 264 149 0 0 chr12 49411482 49411529 -94870960 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 1515 183 72 26 chr12 49411752 49412101 -94870388 - MLT1A1 LTR MaLR 0 365 1 2324 96 0 0 chr12 49414101 49414403 -94868086 + AluSc SINE Alu 1 302 -7 1659 193 0 39 chr12 49415359 49415665 -94866824 - AluJo SINE Alu -10 302 9 26 30 0 0 chr12 49416448 49416481 -94866008 + AT_rich Low_complexity Low_complexity 1 33 0 1949 139 0 51 chr12 49416557 49416873 -94865616 - AluJb SINE Alu -8 304 5 365 293 31 31 chr12 49417326 49417517 -94864972 - MER117 DNA MER1_type -1 196 6 9270 240 27 29 chr12 49418132 49418404 -94864085 + L1ME1 LINE L1 2555 2826 -3340 2168 112 16 3 chr12 49418404 49418709 -94863780 + AluY SINE Alu 1 309 -2 9270 240 27 29 chr12 49418709 49422050 -94860439 + L1ME1 LINE L1 2826 6161 -5 626 239 67 21 chr12 49422056 49422295 -94860194 + L1ME4a LINE L1 5677 5926 -195 255 316 118 0 chr12 49423884 49424020 -94858469 - MIR SINE MIR 0 262 111 2160 82 31 7 chr12 49424024 49424316 -94858173 - AluSx SINE Alu -13 299 1 4717 165 18 49 chr12 49424887 49425257 -94857232 - L1MB8 LINE L1 -1 6177 5797 2134 132 0 0 chr12 49425257 49425545 -94856944 - AluSx SINE Alu -24 288 1 4717 165 18 49 chr12 49425545 49426074 -94856415 - L1MB8 LINE L1 -381 5797 5253 1824 123 56 7 chr12 49426074 49426369 -94856120 - AluSx SINE Alu 0 308 1 4717 165 18 49 chr12 49426369 49426519 -94855970 - L1MB8 LINE L1 -925 5253 5100 674 199 15 37 chr12 49426519 49426655 -94855834 - FLAM_C SINE Alu 0 133 1 4717 165 18 49 chr12 49426655 49427049 -94855440 - L1MB8 LINE L1 -1078 5100 4771 6789 50 1 3 chr12 49427086 49427948 -94854541 + L1PA5 LINE L1 4367 5226 -920 5945 36 0 0 chr12 49428048 49428750 -94853739 + L1PA5 LINE L1 5448 6149 -5 411 90 26 0 chr12 49428751 49428816 -94853673 + L1MB8 LINE L1 5820 5894 -270 465 223 41 33 chr12 49428846 49428967 -94853522 - AluJ SINE Alu -60 252 131 729 182 7 7 chr12 49428973 49429116 -94853373 + L1MB8 LINE L1 6030 6172 -6 551 164 26 0 chr12 49429120 49429236 -94853253 - MER45B DNA AcHobo -85 955 837 295 268 0 14 chr12 49430365 49430436 -94852053 + GA-rich Low_complexity Low_complexity 2 71 0 1551 173 70 16 chr12 49433078 49433465 -94849024 + L1M4 LINE L1 1180 1587 -4955 2087 132 3 13 chr12 49433468 49433778 -94848711 + AluSg SINE Alu 1 307 -3 231 171 0 0 chr12 49433778 49433813 -94848676 - MIR SINE MIR -164 98 64 210 143 0 0 chr12 49433833 49433868 -94848621 + (T)n Simple_repeat Simple_repeat 1 35 0 45 0 0 0 chr12 49434124 49434169 -94848320 + AT_rich Low_complexity Low_complexity 1 45 0 2192 110 7 0 chr12 49435229 49435529 -94846960 + AluSg SINE Alu 3 304 -6 624 267 76 33 chr12 49435533 49435743 -94846746 - MIR SINE MIR -42 220 2 389 216 23 0 chr12 49436410 49436498 -94845991 - MER103 DNA DNA -75 91 2 343 319 11 0 chr12 49436816 49436907 -94845582 - L2 LINE L2 -45 3227 3136 788 116 91 8 chr12 49436960 49437081 -94845408 - AluJ SINE Alu -171 131 1 507 241 141 42 chr12 49437211 49437402 -94845087 + MER63A DNA MER1_type 1 210 0 264 200 0 0 chr12 49437512 49437567 -94844922 + CT-rich Low_complexity Low_complexity 3 57 0 442 308 83 29 chr12 49437780 49438020 -94844469 - MLT1L LTR MaLR -8 607 355 1074 148 59 110 chr12 49438048 49438338 -94844151 + MLT1C LTR MaLR 4 278 -189 2027 130 0 10 chr12 49438421 49438720 -94843769 + AluSq SINE Alu 1 296 -17 1661 196 52 70 chr12 49438735 49438857 -94843632 - MER34B LTR ERV1 -64 501 378 2289 104 0 0 chr12 49438857 49439155 -94843334 + AluSg SINE Alu 6 303 -7 1661 196 52 70 chr12 49439155 49439533 -94842956 - MER34B LTR ERV1 -187 378 10 801 220 28 16 chr12 49439562 49439744 -94842745 + MLT1C LTR MaLR 284 467 0 499 288 160 14 chr12 49439775 49439994 -94842495 - MLT1L LTR MaLR -364 251 1 22 0 0 0 chr12 49440494 49440516 -94841973 + AT_rich Low_complexity Low_complexity 1 22 0 181 291 222 26 chr12 49441050 49441167 -94841322 + L2 LINE L2 3133 3272 0 619 286 8 0 chr12 49442151 49442284 -94840205 - MER91A DNA MER1_type 0 196 63 333 313 23 16 chr12 49444560 49444688 -94837801 + MER5B DNA MER1_type 1 129 -49 192 40 0 0 chr12 49445076 49445101 -94837388 + (T)n Simple_repeat Simple_repeat 1 25 0 202 222 44 0 chr12 49445529 49445574 -94836915 + MIR SINE MIR 48 94 -114 668 261 115 14 chr12 49445637 49445855 -94836634 - MIR SINE MIR 0 262 23 266 208 52 39 chr12 49446134 49446211 -94836278 - MIR SINE MIR -147 115 38 2369 80 0 0 chr12 49447095 49447382 -94835107 - AluSg SINE Alu -18 292 6 2278 109 3 0 chr12 49447964 49448268 -94834221 + AluSg SINE Alu 1 305 -5 250 293 108 40 chr12 49448681 49448903 -94833586 - HAL1 LINE L1 -293 2214 1978 931 251 61 4 chr12 49449147 49449394 -94833095 + MIR SINE MIR 2 262 0 2256 94 13 7 chr12 49449460 49449767 -94832722 + AluSq SINE Alu 1 309 -4 1822 89 0 0 chr12 49449952 49450176 -94832313 + AluSg/x SINE Alu 82 305 -7 2280 84 0 3 chr12 49450239 49450554 -94831935 + AluSq SINE Alu 1 314 0 6869 231 34 41 chr12 49450565 49451600 -94830889 + L1MC/D LINE L1 3248 4262 -1884 2317 113 0 3 chr12 49451600 49451910 -94830579 + AluSq SINE Alu 4 312 -1 6869 231 34 41 chr12 49451910 49452911 -94829578 + L1MC/D LINE L1 4262 5269 -877 1184 161 24 28 chr12 49452911 49453122 -94829367 + AluJb SINE Alu 86 295 -17 2708 144 16 39 chr12 49453125 49453618 -94828871 + L1MC/D LINE L1 5258 5739 -605 204 290 29 0 chr12 49453628 49453697 -94828792 - L3 LINE CR1 -1124 453 383 4809 41 2 7 chr12 49453902 49454463 -94828026 - LTR6B LTR ERV1 0 558 1 1939 158 3 7 chr12 49454510 49454814 -94827675 - AluJb SINE Alu -9 303 1 327 49 0 0 chr12 49455509 49455550 -94826939 + (A)n Simple_repeat Simple_repeat 1 41 0 507 282 84 40 chr12 49455557 49455784 -94826705 + Charlie8 DNA MER1_type 28 264 -2153 2287 114 7 0 chr12 49455878 49456184 -94826305 - AluSx SINE Alu -4 308 1 5023 93 10 40 chr12 49456213 49456935 -94825554 - L1PA11 LINE L1 -1 6173 5474 1554 137 4 18 chr12 49456937 49457163 -94825326 - AluSx SINE Alu -89 223 1 1528 117 0 0 chr12 49457164 49457387 -94825102 - L1PA11 LINE L1 -1490 4656 4434 233 283 2 0 chr12 49457438 49457505 -94824984 + Charlie8 DNA MER1_type 1350 2417 0 4136 140 14 65 chr12 49457864 49458592 -94823897 - LTR8 LTR ERV1 0 691 1 267 239 0 0 chr12 49458620 49458687 -94823802 + GA-rich Low_complexity Low_complexity 4 70 0 5457 93 10 6 chr12 49458708 49459396 -94823093 - LTR8 LTR ERV1 0 691 1 602 157 0 0 chr12 49459575 49459658 -94822831 + FLAM_C SINE Alu 37 119 -24 1646 145 39 18 chr12 49461151 49461314 -94821175 - AluJo SINE Alu -8 304 131 1781 118 110 7 chr12 49461314 49461586 -94820903 - AluSx SINE Alu -10 302 3 1646 145 39 18 chr12 49461586 49461705 -94820784 - AluJo SINE Alu -181 131 16 859 165 0 0 chr12 49461745 49461872 -94820617 + FLAM_C SINE Alu 1 127 -16 1285 109 258 0 chr12 49462188 49462409 -94820080 + AluSx SINE Alu 14 291 -21 225 391 167 3 chr12 49462723 49463022 -94819467 - L2 LINE L2 -583 2731 2384 2040 139 3 0 chr12 49463398 49463685 -94818804 + AluSx SINE Alu 1 288 -24 24 0 0 0 chr12 49463686 49463710 -94818779 + AT_rich Low_complexity Low_complexity 1 24 0 300 390 45 7 chr12 49464058 49464212 -94818277 + L2 LINE L2 3108 3267 -5 2157 127 0 7 chr12 49464284 49464592 -94817897 + AluSx SINE Alu 1 306 -6 1751 127 3 75 chr12 49464592 49464708 -94817781 + AluJb SINE Alu 3 126 -186 2751 20 0 0 chr12 49464708 49465009 -94817480 + AluYa5 SINE Alu 1 301 -10 1751 127 3 75 chr12 49465009 49465214 -94817275 + AluJb SINE Alu 126 301 -11 266 333 56 0 chr12 49465379 49465469 -94817020 + MIR SINE MIR 33 127 -81 424 263 61 14 chr12 49465671 49465858 -94816631 - MIR SINE MIR -19 243 2 413 174 43 33 chr12 49467338 49467430 -94815059 - MER34 LTR ERV1 0 542 450 925 126 0 22 chr12 49467440 49467575 -94814914 + FLAM_C SINE Alu 1 132 -1 776 166 159 0 chr12 49467652 49467809 -94814680 - MER34C LTR ERV1 -352 233 52 946 110 15 0 chr12 49467809 49467945 -94814544 - AluSg/x SINE Alu -18 294 157 2338 86 0 0 chr12 49468171 49468463 -94814026 - AluSq SINE Alu -16 297 6 2200 107 7 0 chr12 49468687 49468995 -94813494 + AluSq SINE Alu 1 310 -3 285 331 16 63 chr12 49469926 49470037 -94812452 + MIR SINE MIR 51 166 -42 1637 160 22 8 chr12 49470037 49470305 -94812184 + AluJb SINE Alu 3 274 -38 900 83 41 12 chr12 49470305 49470474 -94812015 + GA-rich Low_complexity Low_complexity 3 176 0 285 331 16 63 chr12 49470474 49470488 -94812001 + MIR SINE MIR 164 172 -36 2205 114 0 0 chr12 49470490 49470787 -94811702 - AluSx SINE Alu -11 301 5 1417 171 0 72 chr12 49471416 49471720 -94810769 - AluJo SINE Alu -30 282 1 2001 141 0 0 chr12 49471783 49472074 -94810415 + AluSx SINE Alu 11 301 -11 910 186 24 0 chr12 49472844 49473011 -94809478 + AluJb SINE Alu 140 310 -2 615 178 178 72 chr12 49473040 49473075 -94809414 + MIR SINE MIR 64 94 -168 2319 113 0 6 chr12 49473075 49473386 -94809103 - AluSx SINE Alu -3 309 1 615 178 178 72 chr12 49473386 49473530 -94808959 + MIR SINE MIR 94 262 0 305 314 57 97 chr12 49473512 49473843 -94808646 - L2 LINE L2 -25 3247 2930 * 899 143 8 8 chr12 49474257 49474390 -94808099 - FLAM_C SINE Alu 0 133 1 1802 163 3 22 chr12 49474730 49475043 -94807446 + AluJo SINE Alu 1 307 -5 2621 52 0 7 chr12 49475046 49475353 -94807136 + AluSp SINE Alu 3 307 -6 265 192 64 77 chr12 49475443 49475489 -94807000 - L2 LINE L2 -1025 2289 2243 505 291 64 28 chr12 49475489 49475740 -94806749 - MIR SINE MIR -1 261 2 265 192 64 77 chr12 49475740 49475771 -94806718 - L2 LINE L2 -1071 2243 2213 390 240 77 0 chr12 49475798 49475902 -94806587 + MER94 DNA DNA 20 131 -3 182 167 0 24 chr12 49476001 49476043 -94806446 + GA-rich Low_complexity Low_complexity 2 42 0 347 328 56 72 chr12 49476187 49476562 -94805927 - L2 LINE L2 -1370 1944 1576 410 295 40 23 chr12 49476727 49476900 -94805589 - MIR SINE MIR -24 238 63 2211 132 0 0 chr12 49477831 49478141 -94804348 - AluSx SINE Alu -2 310 1 2137 96 0 17 chr12 49479292 49479584 -94802905 - AluSx SINE Alu -25 287 1 23 33 0 0 chr12 49479766 49479796 -94802693 + AT_rich Low_complexity Low_complexity 1 30 0 2002 119 3 31 chr12 49480064 49480382 -94802107 - AluSx SINE Alu -3 309 1 2108 126 3 0 chr12 49480481 49480775 -94801714 + AluSx SINE Alu 1 295 -17 1941 141 26 7 chr12 49480935 49481239 -94801250 - AluSx SINE Alu -2 310 1 183 269 214 41 chr12 49481423 49481499 -94800990 + MIR SINE MIR 87 149 -113 2410 81 0 10 chr12 49481499 49481796 -94800693 + AluSq SINE Alu 1 294 -19 183 269 214 41 chr12 49481796 49481864 -94800625 + MIR SINE MIR 149 256 -6 2344 100 18 131 chr12 49481997 49482043 -94800446 - Tigger4(Zombi) DNA MER2_type -2 2729 2679 2220 121 3 3 chr12 49482043 49482356 -94800133 + AluSq SINE Alu 1 313 0 2344 100 18 131 chr12 49482356 49482679 -94799810 - Tigger4(Zombi) DNA MER2_type -52 2679 2321 2469 69 0 16 chr12 49482679 49482984 -94799505 - AluY SINE Alu -10 301 2 2349 83 3 0 chr12 49482993 49483295 -94799194 - AluY SINE Alu -8 303 1 2344 100 18 131 chr12 49483295 49483358 -94799131 - Tigger4(Zombi) DNA MER2_type -418 2313 2342 2148 112 7 0 chr12 49483358 49483653 -94798836 - AluSx SINE Alu -15 297 1 2344 100 18 131 chr12 49483653 49483698 -94798791 - Tigger4(Zombi) DNA MER2_type -388 2343 2295 411 154 90 0 chr12 49483696 49483774 -94798715 - Tigger4(Zombi) DNA MER2_type -2645 86 2 * 666 276 84 4 chr12 49483779 49484018 -94798471 - MIR SINE MIR 0 262 5 878 276 43 81 chr12 49484052 49484559 -94797930 - MER34 LTR ERV1 -30 512 25 535 191 0 0 chr12 49485116 49485200 -94797289 - AluJ/FLAM SINE Alu -227 85 2 666 260 42 128 chr12 49485663 49485816 -94796673 - MER34 LTR ERV1 0 542 377 324 0 0 0 chr12 49485816 49485852 -94796637 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1402 153 125 4 chr12 49485861 49486109 -94796380 - AluJb SINE Alu -30 282 5 666 260 42 128 chr12 49486109 49486120 -94796369 - MER34 LTR ERV1 -173 369 359 1649 65 83 0 chr12 49486120 49486336 -94796153 - AluY SINE Alu -69 242 9 666 260 42 128 chr12 49486336 49486753 -94795736 - MER34 LTR ERV1 -183 359 1 2277 87 13 7 chr12 49486886 49487195 -94795294 - AluSp SINE Alu -2 311 1 254 383 0 0 chr12 49488824 49488939 -94793550 + C-rich Low_complexity Low_complexity 4 118 0 1049 95 51 13 chr12 49489630 49489788 -94792701 + THE1C LTR MaLR 1 164 -211 2377 85 7 0 chr12 49489789 49490095 -94792394 - AluSp SINE Alu -5 308 1 202 325 86 8 chr12 49490401 49490518 -94791971 + L2 LINE L2 3187 3312 -1 578 168 30 0 chr12 49491176 49491277 -94791212 - MLT1D LTR MaLR 0 505 402 408 279 108 78 chr12 49491280 49491734 -94790755 + L2 LINE L2 2760 3232 -40 2571 34 17 0 chr12 49492650 49492945 -94789544 + AluY SINE Alu 1 300 -11 1741 181 128 13 chr12 49493085 49493178 -94789311 + MER47B DNA MER2_type 1 82 -2241 1455 134 86 37 chr12 49493178 49493446 -94789043 + AluJo SINE Alu 1 281 -31 234 0 0 0 chr12 49493449 49493475 -94789014 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1741 181 128 13 chr12 49493475 49493752 -94788737 + MER47B DNA MER2_type 83 418 0 258 116 0 47 chr12 49493757 49493800 -94788689 + MER47B DNA MER2_type 378 418 0 448 257 0 0 chr12 49493942 49494047 -94788442 - MER103 DNA DNA -53 113 9 1668 175 10 23 chr12 49494072 49494251 -94788238 - AluJo SINE Alu -4 308 133 2285 97 0 7 chr12 49494251 49494561 -94787928 - AluSg SINE Alu -2 308 1 1668 175 10 23 chr12 49494561 49494689 -94787800 - AluJo SINE Alu -179 133 5 651 171 125 62 chr12 49495562 49495738 -94786751 - MER5A DNA MER1_type 0 189 3 640 250 83 87 chr12 49495831 49496217 -94786272 - L1MC5 LINE L1 -176 7785 7399 2161 130 0 0 chr12 49496217 49496509 -94785980 - AluSg1 SINE Alu -17 292 1 640 250 83 87 chr12 49496509 49496835 -94785654 - L1MC5 LINE L1 -562 7399 7174 714 200 0 0 chr12 49496835 49496950 -94785539 - FLAM_A SINE Alu -16 117 3 640 250 83 87 chr12 49496950 49497096 -94785393 - L1MC5 LINE L1 -787 7174 7029 1967 153 0 0 chr12 49497101 49497395 -94785094 + AluSx SINE Alu 1 294 -18 1262 258 40 72 chr12 49497781 49498227 -94784262 + MER34 LTR ERV1 1 427 -115 2072 122 6 16 chr12 49498227 49498539 -94783950 + AluSx SINE Alu 1 309 -3 1262 258 40 72 chr12 49498539 49498647 -94783842 + MER34 LTR ERV1 427 537 -5 2267 102 0 3 chr12 49498983 49499277 -94783212 - AluSx SINE Alu -19 293 1 317 274 57 8 chr12 49499579 49499703 -94782786 + MIR SINE MIR 126 255 -7 526 178 28 3 chr12 49499707 49499933 -94782556 + AluJo SINE Alu 4 288 -24 2353 109 3 0 chr12 49499936 49500247 -94782242 + AluSp SINE Alu 1 312 -1 421 256 6 112 chr12 49500616 49500806 -94781683 + MER5B DNA MER1_type 17 177 -1 2362 97 0 0 chr12 49500809 49501109 -94781380 + AluSg SINE Alu 2 301 -9 312 241 27 13 chr12 49501115 49501195 -94781294 - MIR3 SINE MIR -48 160 79 268 267 122 15 chr12 49501234 49501365 -94781124 - MER112 DNA MER1_type 0 260 116 225 108 0 0 chr12 49501378 49501415 -94781074 + (TG)n Simple_repeat Simple_repeat 2 38 0 504 332 29 4 chr12 49501592 49501830 -94780659 + MIR SINE MIR 6 249 -13 15559 195 35 18 chr12 49502159 49503963 -94778526 + L1PB1 LINE L1 10 1782 -5085 2103 75 45 0 chr12 49503963 49504230 -94778259 - AluSp SINE Alu -5 308 30 15559 195 35 18 chr12 49504230 49505606 -94776883 + L1PB1 LINE L1 1782 3133 -3734 6138 60 29 3 chr12 49505606 49506366 -94776123 - LTR17 LTR ERV1 0 780 1 15559 195 35 18 chr12 49506366 49507560 -94774929 + L1PB1 LINE L1 3133 4305 -2562 2086 122 3 23 chr12 49507560 49507864 -94774625 - AluSx SINE Alu -14 298 1 15559 195 35 18 chr12 49507864 49510111 -94772378 + L1PB1 LINE L1 4305 6867 0 203 267 0 0 chr12 49510117 49510177 -94772312 + A-rich Low_complexity Low_complexity 1 60 0 226 306 0 0 chr12 49510619 49510681 -94771808 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 239 321 76 49 chr12 49510945 49511129 -94771360 - L2 LINE L2 -234 3038 2850 1695 165 15 7 chr12 49511194 49511467 -94771022 + AluJo SINE Alu 1 275 -37 255 31 0 0 chr12 49511471 49511503 -94770986 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2152 119 0 3 chr12 49511505 49511799 -94770690 + AluSq SINE Alu 1 293 -20 27 29 0 0 chr12 49511799 49511833 -94770656 + AT_rich Low_complexity Low_complexity 1 34 0 1944 202 68 22 chr12 49511833 49512288 -94770201 - MLT1D LTR MaLR -27 478 3 2357 98 16 0 chr12 49513396 49513702 -94768787 - AluY SINE Alu 0 311 1 549 273 136 0 chr12 49513731 49513929 -94768560 - MIR SINE MIR -6 256 32 299 279 0 12 chr12 49513999 49514085 -94768404 + MER5B DNA MER1_type 5 89 -89 319 237 21 10 chr12 49514268 49514365 -94768124 - MIR SINE MIR -61 201 104 207 0 0 0 chr12 49514396 49514419 -94768070 + (A)n Simple_repeat Simple_repeat 1 23 0 241 281 0 61 chr12 49514421 49514503 -94767986 - MIR SINE MIR -163 99 23 1991 201 66 81 chr12 49514509 49514831 -94767658 + L1MC5 LINE L1 6973 7298 -663 2200 122 0 28 chr12 49514831 49515150 -94767339 - AluSx SINE Alu 0 312 3 1991 201 66 81 chr12 49515150 49515516 -94766973 + L1MC5 LINE L1 7298 7650 -311 1836 195 0 6 chr12 49515516 49515829 -94766660 - AluJo SINE Alu -1 311 1 1991 201 66 81 chr12 49515829 49515926 -94766563 + L1MC5 LINE L1 7650 7747 -214 2161 102 3 3 chr12 49516112 49516419 -94766070 - AluSx SINE Alu 0 307 1 1806 128 91 0 chr12 49516467 49516741 -94765748 + AluSx SINE Alu 1 299 -13 753 129 0 16 chr12 49516757 49516881 -94765608 + AluSg/x SINE Alu 177 298 -14 414 250 28 0 chr12 49517225 49517333 -94765156 - L2 LINE L2 0 3313 3203 443 305 74 0 chr12 49517489 49517692 -94764797 + MIR SINE MIR 45 262 0 1675 184 16 7 chr12 49518133 49518442 -94764047 - AluJo SINE Alu 0 312 1 835 196 0 26 chr12 49518487 49518640 -94763849 - AluJb SINE Alu -31 281 133 194 292 15 0 chr12 49518704 49518769 -94763720 - MIR SINE MIR -107 155 90 517 97 0 0 chr12 49519408 49519480 -94763009 - AluSp/q SINE Alu -13 300 229 1652 91 0 10 chr12 49519482 49519691 -94762798 + AluSq SINE Alu 89 295 -18 27 0 0 0 chr12 49519691 49519718 -94762771 + AT_rich Low_complexity Low_complexity 1 27 0 955 276 174 20 chr12 49520856 49521309 -94761180 - LTR33A LTR ERVL 0 523 1 1928 111 76 7 chr12 49521457 49521745 -94760744 - AluSq SINE Alu -5 308 1 198 286 0 36 chr12 49522397 49522453 -94760036 - MIR SINE MIR -130 132 79 378 282 74 13 chr12 49522656 49522805 -94759684 + MIR SINE MIR 46 203 -59 321 238 56 88 chr12 49522809 49522969 -94759520 - LTR48 LTR ERV1 -7 780 626 643 257 22 16 chr12 49522983 49523166 -94759323 - MER34 LTR ERV1 -357 185 2 2311 59 3 21 chr12 49523378 49523687 -94758802 + AluY SINE Alu 1 311 0 405 354 111 19 chr12 49523981 49524306 -94758183 + L2 LINE L2 2914 3268 -4 22 0 0 0 chr12 49524623 49524645 -94757844 + AT_rich Low_complexity Low_complexity 1 22 0 2398 95 3 0 chr12 49527116 49527421 -94755068 - AluSp SINE Alu -7 306 1 2927 158 22 6 chr12 49527696 49528185 -94754304 + LOR1a LTR ERV1 1 497 0 1730 152 54 4 chr12 49528240 49528516 -94753973 - AluSx SINE Alu -2 310 21 1530 169 95 4 chr12 49529127 49529400 -94753089 - AluJb SINE Alu -14 298 1 269 265 29 39 chr12 49530101 49530203 -94752286 - MIR SINE MIR -154 108 8 27 29 0 0 chr12 49531381 49531415 -94751074 + AT_rich Low_complexity Low_complexity 1 34 0 381 268 44 92 chr12 49532534 49532636 -94749853 - L2 LINE L2 -56 3257 3152 2248 126 0 0 chr12 49532636 49532938 -94749551 + AluSx SINE Alu 1 302 -10 381 268 44 92 chr12 49532938 49533130 -94749359 - L2 LINE L2 -161 3152 2977 2345 97 10 6 chr12 49533171 49533482 -94749007 - AluSx SINE Alu 0 312 1 305 313 82 0 chr12 49533632 49533766 -94748723 + MER96 DNA MER1_type? 8 152 -23 2936 188 63 9 chr12 49533832 49534278 -94748211 + MER90 LTR ERV1 5 490 -124 1886 126 0 4 chr12 49534278 49534541 -94747948 + AluJb SINE Alu 30 291 -21 2936 188 63 9 chr12 49534541 49534669 -94747820 + MER90 LTR ERV1 490 610 -4 181 208 125 0 chr12 49534914 49534962 -94747527 - MIR SINE MIR -122 140 87 2249 111 0 0 chr12 49536209 49536507 -94745982 + AluSx SINE Alu 1 298 -14 1129 254 108 40 chr12 49536740 49537138 -94745351 + MER77 LTR ERV1 175 599 -6 * 1473 150 0 21 chr12 49537127 49537367 -94745122 + MER4E LTR ERV1 544 778 -1 3018 134 71 4 chr12 49537367 49537845 -94744644 + L1PA16 LINE L1 5648 6157 -9 285 328 101 8 chr12 49538012 49538250 -94744239 + L1M4 LINE L1 4741 5000 -1146 552 242 103 24 chr12 49538259 49538424 -94744065 + L2 LINE L2 1374 1551 -1763 229 276 0 0 chr12 49538443 49538501 -94743988 - MER33 DNA MER1_type -5 319 262 1577 145 6 76 chr12 49538501 49538818 -94743671 + AluJb SINE Alu 9 303 -9 2148 115 3 22 chr12 49538821 49539134 -94743355 + AluSx SINE Alu 1 307 -5 1374 162 38 11 chr12 49539140 49539406 -94743083 - MER33 DNA MER1_type -51 273 1 473 264 121 21 chr12 49539408 49539647 -94742842 + L2 LINE L2 1560 1822 -1492 695 179 16 108 chr12 49539784 49540046 -94742443 + MER51A LTR ERV1 346 587 -47 774 244 44 89 chr12 49540046 49540149 -94742340 + L2 LINE L2 1999 2105 -1209 2459 78 0 3 chr12 49540149 49540457 -94742032 - AluY SINE Alu -4 307 1 774 244 44 89 chr12 49540457 49540668 -94741821 + L2 LINE L2 2105 2299 -1015 1619 219 32 19 chr12 49540668 49540977 -94741512 - MLT1C LTR MaLR 0 467 151 2282 97 3 3 chr12 49540977 49541277 -94741212 + AluSq SINE Alu 1 300 -13 1619 219 32 19 chr12 49541277 49541341 -94741148 - MLT1C LTR MaLR -316 151 89 1546 224 171 58 chr12 49541385 49541687 -94740802 + L2 LINE L2 2295 2562 -751 1693 178 0 22 chr12 49541687 49542002 -94740487 - AluJo SINE Alu 0 312 5 1546 224 171 58 chr12 49542002 49542369 -94740120 + L2 LINE L2 2562 3040 -273 1703 185 0 7 chr12 49542531 49542823 -94739666 - AluJb SINE Alu -22 290 1 538 226 57 31 chr12 49542843 49543002 -94739487 + L2 LINE L2 3125 3287 -26 208 228 13 20 chr12 49543008 49543157 -94739332 + (TA)n Simple_repeat Simple_repeat 1 148 0 1561 176 0 11 chr12 49543199 49543461 -94739028 - AluJo SINE Alu -18 294 36 2424 65 3 3 chr12 49543583 49543890 -94738599 - AluY SINE Alu -4 307 1 1885 71 34 58 chr12 49543940 49544234 -94738255 - L1MA3 LINE L1 -5 6300 6014 22 56 0 0 chr12 49544351 49544387 -94738102 + AT_rich Low_complexity Low_complexity 1 36 0 2311 100 0 3 chr12 49545048 49545357 -94737132 + AluY SINE Alu 1 308 -3 384 283 144 0 chr12 49545466 49545639 -94736850 - L1ME3 LINE L1 0 6162 5965 1916 84 105 28 chr12 49545712 49545998 -94736491 + AluY SINE Alu 1 308 -3 457 214 24 56 chr12 49546044 49546146 -94736343 + MLT2B1 LTR ERVL 365 464 -56 1923 199 93 35 chr12 49546146 49546609 -94735880 + LTR2B LTR ERV1 1 490 0 457 214 24 56 chr12 49546609 49546632 -94735857 + MLT2B1 LTR ERVL 464 486 -34 926 251 56 34 chr12 49546667 49546883 -94735606 - L1M4 LINE L1 -2700 3706 3496 1678 113 0 4 chr12 49546883 49547144 -94735345 + AluSg SINE Alu 60 319 0 926 251 56 34 chr12 49547144 49547339 -94735150 - L1M4 LINE L1 -2910 3496 3284 230 168 119 69 chr12 49547334 49547435 -94735054 - L1ME4a LINE L1 -106 6015 5910 * 2018 132 90 15 chr12 49547481 49547815 -94734674 - L1PA16 LINE L1 -4 6162 5804 1144 164 54 110 chr12 49547817 49548189 -94734300 - L1M4 LINE L1 -3113 3293 2943 384 272 0 0 chr12 49548188 49548280 -94734209 - L1MDb LINE L1 -2278 4128 4037 * 1779 121 20 38 chr12 49548285 49548639 -94733850 - MER4A LTR ERV1 0 664 261 589 103 31 21 chr12 49548639 49548736 -94733753 - MER4A LTR ERV1 -566 98 1 1210 201 70 53 chr12 49548777 49549151 -94733338 - L1MDb LINE L1 -3473 2933 2554 2220 84 16 9 chr12 49549151 49549550 -94732939 + LTR7 LTR ERV1 1 448 -2 4216 227 74 50 chr12 49549552 49549687 -94732802 - L1MDb LINE L1 -3848 2558 2428 1048 239 37 14 chr12 49549687 49549905 -94732584 + MER58A DNA MER1_type 1 223 -1 4216 227 74 50 chr12 49549905 49550166 -94732323 - L1MDb LINE L1 -3978 2428 2175 2108 136 3 3 chr12 49550166 49550475 -94732014 - AluSg SINE Alu -1 309 1 2182 128 0 3 chr12 49550478 49550774 -94731715 - AluSx SINE Alu -17 295 1 4216 227 74 50 chr12 49550774 49552136 -94730353 - L1MDb LINE L1 -4232 2174 783 376 182 16 25 chr12 49552597 49552718 -94729771 + GA-rich Low_complexity Low_complexity 1 120 0 23 0 0 0 chr12 49553041 49553064 -94729425 + AT_rich Low_complexity Low_complexity 1 23 0 1778 134 13 37 chr12 49553075 49553373 -94729116 + AluSx SINE Alu 1 291 -21 820 163 0 44 chr12 49553455 49553590 -94728899 - FLAM_A SINE Alu -3 130 2 2397 62 3 3 chr12 49553654 49553946 -94728543 + AluY SINE Alu 1 292 -19 23 33 0 0 chr12 49553946 49553976 -94728513 + AT_rich Low_complexity Low_complexity 1 30 0 2179 114 3 0 chr12 49554092 49554390 -94728099 - AluSp SINE Alu -14 299 1 1813 184 29 86 chr12 49554391 49554879 -94727610 - LTR8 LTR ERV1 -115 576 117 1870 228 44 57 chr12 49555589 49556138 -94726351 + MER34 LTR ERV1 1 542 0 263 239 80 94 chr12 49556188 49556326 -94726163 - MIR SINE MIR -50 212 77 813 201 6 41 chr12 49556432 49556601 -94725888 - AluJo SINE Alu -149 163 1 580 298 136 16 chr12 49556604 49556862 -94725627 + L2 LINE L2 2820 3108 -205 1574 230 22 54 chr12 49556905 49557310 -94725179 + MER97a DNA MER1_type? 87 478 -416 22 70 0 0 chr12 49557488 49557531 -94724958 + AT_rich Low_complexity Low_complexity 1 43 0 189 0 0 0 chr12 49557544 49557565 -94724924 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2211 106 0 14 chr12 49557572 49557865 -94724624 - AluSq SINE Alu -24 289 1 31 26 0 0 chr12 49557865 49557903 -94724586 + AT_rich Low_complexity Low_complexity 1 38 0 3733 143 52 66 chr12 49557996 49558773 -94723716 - LTR1 LTR ERV1 -1 784 19 379 209 55 11 chr12 49558774 49558865 -94723624 - MLT1E LTR MaLR -1 592 498 1141 141 49 0 chr12 49558865 49559050 -94723439 + L1M3f LINE L1 3 196 -5132 839 202 45 49 chr12 49559050 49559337 -94723152 + pTR5 LTR ERV1 743 1028 -1410 4624 80 78 153 chr12 49559518 49560410 -94722079 + LTR12 LTR ERV1 1 826 0 2801 185 28 6 chr12 49560410 49560917 -94721572 + L1M3f LINE L1 193 710 -4618 5416 192 53 51 chr12 49560947 49562586 -94719903 + L1M3f LINE L1 772 2418 -3910 2056 134 0 3 chr12 49562586 49562885 -94719604 + AluSx SINE Alu 1 298 -14 5416 192 53 51 chr12 49562885 49563878 -94718611 + L1M3f LINE L1 2418 3408 -2920 1624 189 133 76 chr12 49563878 49564147 -94718342 - MLT1E LTR MaLR -73 520 268 1504 186 45 4 chr12 49564147 49564411 -94718078 + AluJb SINE Alu 1 275 -37 1624 189 133 76 chr12 49564411 49564593 -94717896 - MLT1E LTR MaLR -325 268 37 2184 150 129 5 chr12 49564593 49564974 -94717515 - MSTA LTR MaLR 0 428 1 1624 189 133 76 chr12 49564974 49565009 -94717480 - MLT1E LTR MaLR -556 37 5 413 204 19 29 chr12 49565023 49565126 -94717363 + MER97a DNA MER1_type? 793 894 0 48 67 0 0 chr12 49565165 49565255 -94717234 + AT_rich Low_complexity Low_complexity 1 90 0 522 291 87 5 chr12 49565255 49565451 -94717038 + L2 LINE L2 3091 3302 -11 333 0 0 0 chr12 49565948 49565985 -94716504 + (TG)n Simple_repeat Simple_repeat 1 37 0 1462 137 4 13 chr12 49566623 49566850 -94715639 - AluJb SINE Alu 0 312 88 2683 180 33 8 chr12 49567195 49567716 -94714773 - L1MB4 LINE L1 -10 6170 5637 196 53 53 0 chr12 49567805 49567843 -94714646 + T-rich Low_complexity Low_complexity 1 40 0 999 189 0 35 chr12 49567846 49568047 -94714442 - AluJb SINE Alu -32 280 87 24 0 0 0 chr12 49568335 49568359 -94714130 + AT_rich Low_complexity Low_complexity 1 24 0 336 44 89 0 chr12 49568702 49568747 -94713742 + LTR47A LTR ERVL 1 49 -403 1563 95 0 0 chr12 49569091 49569317 -94713172 + AluSg/x SINE Alu 85 310 0 2142 119 0 0 chr12 49570189 49570501 -94711988 - AluSx SINE Alu 0 312 1 1925 141 23 23 chr12 49570844 49571148 -94711341 + AluJo SINE Alu 1 304 -8 181 245 94 38 chr12 49571207 49571260 -94711229 - L2 LINE L2 -2 3270 3215 1019 231 28 63 chr12 49571604 49571637 -94710852 + MLT1H LTR MaLR 71 104 -445 2195 114 3 3 chr12 49571637 49571943 -94710546 + AluSx SINE Alu 1 306 -6 1019 231 28 63 chr12 49571943 49572341 -94710148 + MLT1H LTR MaLR 104 549 0 737 226 108 66 chr12 49573270 49573384 -94709105 - HAL1 LINE L1 -1029 1478 1370 1826 133 16 44 chr12 49573384 49573509 -94708980 - AluSx SINE Alu -2 310 183 2087 120 14 14 chr12 49573509 49573801 -94708688 + AluSx SINE Alu 3 294 -18 1826 133 16 44 chr12 49573801 49573992 -94708497 - AluSx SINE Alu -129 183 3 737 226 108 66 chr12 49573992 49574257 -94708232 - HAL1 LINE L1 -1137 1370 1083 418 250 16 23 chr12 49574418 49574546 -94707943 + HAL1 LINE L1 608 734 -1773 4899 107 15 21 chr12 49574563 49574783 -94707706 + L1MA5 LINE L1 5559 5779 -521 2366 78 0 0 chr12 49574783 49575067 -94707422 + AluSc SINE Alu 13 296 -13 4899 107 15 21 chr12 49575067 49575591 -94706898 + L1MA5 LINE L1 5779 6298 -2 1278 129 16 5 chr12 49576019 49576213 -94706276 + MSTB LTR MaLR 1 196 -230 2184 96 7 10 chr12 49576214 49576515 -94705974 + AluSx SINE Alu 2 301 -11 437 118 0 0 chr12 49576531 49576599 -94705890 + MSTB LTR MaLR 365 432 0 33 25 0 0 chr12 49577127 49577167 -94705322 + AT_rich Low_complexity Low_complexity 1 40 0 258 287 23 23 chr12 49577742 49577829 -94704660 - MIR3 SINE MIR -48 160 74 1697 93 0 52 chr12 49578350 49578598 -94703891 - AluSx SINE Alu -21 291 57 222 195 0 0 chr12 49578624 49578665 -94703824 + GA-rich Low_complexity Low_complexity 2 42 0 1747 152 22 4 chr12 49578849 49579126 -94703363 + AluJo SINE Alu 1 282 -30 287 206 56 24 chr12 49579654 49579780 -94702709 + (TA)n Simple_repeat Simple_repeat 2 131 0 1543 190 21 14 chr12 49579950 49580239 -94702250 + AluJo SINE Alu 3 293 -19 2034 142 0 0 chr12 49580241 49580551 -94701938 + AluSx SINE Alu 1 310 0 25 0 0 0 chr12 49580555 49580580 -94701909 + AT_rich Low_complexity Low_complexity 1 25 0 2685 113 35 0 chr12 49581309 49581682 -94700807 - L1PA11 LINE L1 -1 6173 5788 927 172 0 0 chr12 49581752 49581897 -94700592 - AluJb SINE Alu -23 289 145 4602 209 25 22 chr12 49581908 49582793 -94699696 - L1MD1 LINE L1 -187 6449 5568 2218 101 3 0 chr12 49582793 49583081 -94699408 - AluSg SINE Alu -21 289 1 4602 209 25 22 chr12 49583081 49583845 -94698644 - L1MD1 LINE L1 -1068 5568 4789 2118 142 3 0 chr12 49583845 49584154 -94698335 - AluSg SINE Alu 0 310 1 4602 209 25 22 chr12 49584154 49584748 -94697741 - L1MD1 LINE L1 -1847 4789 4198 2240 60 0 35 chr12 49584731 49584833 -94697656 + L1PB1 LINE L1 5801 5905 -246 * 2414 71 0 0 chr12 49584833 49585129 -94697360 + AluY SINE Alu 1 296 -15 2240 60 0 35 chr12 49585129 49585345 -94697144 + L1PB1 LINE L1 5905 6108 -43 2175 255 14 4 chr12 49585403 49586108 -94696381 - L1MD1 LINE L1 -2309 4231 3520 5400 126 195 92 chr12 49586108 49587644 -94694845 + pTR5 LTR ERV1 744 2438 0 769 254 17 27 chr12 49587653 49587853 -94694636 - L1MD1 LINE L1 -3016 3524 3326 2446 71 3 0 chr12 49587853 49588147 -94694342 - AluY SINE Alu -16 295 1 769 254 17 27 chr12 49588147 49588241 -94694248 - L1MD1 LINE L1 -3214 3326 3233 360 179 60 0 chr12 49588264 49588331 -94694158 - FLAM SINE Alu -15 118 48 1408 94 0 5 chr12 49588435 49588636 -94693853 + THE1B LTR MaLR 1 200 -164 302 75 0 0 chr12 49588688 49588728 -94693761 - Alu SINE Alu -262 41 2 2147 114 0 0 chr12 49588752 49589032 -94693457 + AluSx SINE Alu 31 310 -2 859 136 0 8 chr12 49589036 49589168 -94693321 + THE1B LTR MaLR 234 364 0 7349 191 63 70 chr12 49589175 49590035 -94692454 - L1MD1 LINE L1 -3451 3089 2224 2169 130 0 0 chr12 49590035 49590327 -94692162 - AluSx SINE Alu -20 292 1 7349 191 63 70 chr12 49590327 49591211 -94691278 - L1MD1 LINE L1 -4316 2224 1335 197 33 33 0 chr12 49591211 49591241 -94691248 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7349 191 63 70 chr12 49591241 49591637 -94690852 - L1MD1 LINE L1 -5205 1335 938 243 0 0 0 chr12 49591637 49591664 -94690825 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7349 191 63 70 chr12 49591664 49592317 -94690172 - L1MD1 LINE L1 -5602 938 317 213 39 0 0 chr12 49592317 49592343 -94690146 + (TC)n Simple_repeat Simple_repeat 2 27 0 632 198 0 9 chr12 49592343 49592459 -94690030 - FLAM_C SINE Alu -28 115 1 1363 210 6 38 chr12 49592467 49592781 -94689708 - L1MD1 LINE L1 -6222 318 15 334 258 72 10 chr12 49592825 49592922 -94689567 + MIR SINE MIR 160 262 0 949 261 54 0 chr12 49592934 49593175 -94689314 + MIR SINE MIR 1 254 -8 239 53 0 26 chr12 49593176 49593214 -94689275 + (TTA)n Simple_repeat Simple_repeat 2 38 0 396 331 18 30 chr12 49593225 49593394 -94689095 - MIR SINE MIR -67 195 29 23 33 0 0 chr12 49594293 49594323 -94688166 + AT_rich Low_complexity Low_complexity 1 30 0 1390 84 2 6 chr12 49595279 49595522 -94686967 - L1P LINE L1 -723 5428 5190 6241 43 0 0 chr12 49595522 49596267 -94686222 + L1PA5 LINE L1 5404 6151 -3 715 250 71 37 chr12 49596293 49596645 -94685844 + L1MEc LINE L1 1526 1889 -4507 252 227 0 0 chr12 49596762 49596828 -94685661 + L1MEc LINE L1 1996 2061 -4335 * 410 235 10 0 chr12 49596822 49596920 -94685569 + L1ME1 LINE L1 6054 6152 -14 2362 98 0 3 chr12 49597400 49597705 -94684784 - AluY SINE Alu -7 304 1 2995 142 51 30 chr12 49597911 49598656 -94683833 + L1MA4 LINE L1 5459 6286 -14 832 123 0 0 chr12 49598656 49598770 -94683719 + AluSp/q SINE Alu 194 307 -6 1516 102 0 0 chr12 49598821 49599017 -94683472 - AluSg SINE Alu -113 197 2 791 207 62 6 chr12 49599701 49599880 -94682609 - MER5A DNA MER1_type 0 189 1 420 257 203 31 chr12 49599880 49600092 -94682397 + MIR SINE MIR 9 262 0 31 0 0 0 chr12 49600334 49600365 -94682124 + AT_rich Low_complexity Low_complexity 1 31 0 573 198 10 0 chr12 49600372 49600473 -94682016 - AluJo/FRAM SINE Alu -30 282 181 2034 154 0 3 chr12 49600476 49600774 -94681715 - AluJb SINE Alu -15 297 1 2314 109 3 0 chr12 49600777 49601079 -94681410 - AluSx SINE Alu -9 303 1 817 205 35 21 chr12 49601542 49601850 -94680639 + MLT1A1 LTR MaLR 1 363 -11 452 195 102 16 chr12 49602123 49602251 -94680238 + MER58A DNA MER1_type 1 139 0 1564 98 18 27 chr12 49602724 49602948 -94679541 - AluSg/x SINE Alu -16 296 75 369 271 119 30 chr12 49603039 49603265 -94679224 + MIR SINE MIR 10 255 -7 241 333 0 38 chr12 49603749 49603854 -94678635 + MIR SINE MIR 45 145 -63 696 151 144 0 chr12 49604176 49604315 -94678174 - MER46A DNA MER2_type -77 159 1 352 141 24 82 chr12 49604315 49604400 -94678089 + MSTC LTR MaLR 348 427 -1 618 211 21 0 chr12 49604775 49604917 -94677572 - MLT2B1 LTR ERVL -373 147 3 286 237 53 53 chr12 49604921 49604997 -94677492 + L2 LINE L2 3197 3272 0 466 121 0 33 chr12 49605293 49605384 -94677105 + (GGAA)n Simple_repeat Simple_repeat 2 89 0 1371 135 5 0 chr12 49605977 49606185 -94676304 + MER2 DNA MER2_type 2 210 -135 1898 180 0 0 chr12 49606347 49606652 -94675837 + AluJb SINE Alu 1 305 -7 1202 310 85 19 chr12 49606656 49607231 -94675258 - L2 LINE L2 -414 2900 2288 286 0 0 0 chr12 49607245 49607278 -94675211 - MLT2A1 LTR ERVL 0 453 421 259 24 0 48 chr12 49607288 49607330 -94675159 + (TA)n Simple_repeat Simple_repeat 2 41 0 581 101 9 37 chr12 49607330 49607428 -94675061 + L1PA16 LINE L1 6070 6166 0 755 68 0 0 chr12 49607490 49607593 -94674896 + MLT2A2 LTR ERVL 5 107 -346 192 111 0 0 chr12 49607593 49607629 -94674860 + (TA)n Simple_repeat Simple_repeat 1 36 0 2734 79 2 50 chr12 49607632 49608052 -94674437 - MLT2A1 LTR ERVL -40 404 5 2323 114 14 11 chr12 49608117 49608478 -94674011 - L1PA16 LINE L1 -1 6165 5804 742 197 53 90 chr12 49608478 49608563 -94673926 - L2 LINE L2 -1013 2301 2214 968 209 141 0 chr12 49608563 49608846 -94673643 - MER33 DNA MER1_type -1 323 1 742 197 53 90 chr12 49608846 49609004 -94673485 - L2 LINE L2 -1100 2214 2067 557 180 49 0 chr12 49609004 49609126 -94673363 + L1ME2 LINE L1 6036 6163 -1 189 0 0 0 chr12 49609144 49609165 -94673324 + (GA)n Simple_repeat Simple_repeat 2 22 0 547 237 65 27 chr12 49609181 49609367 -94673122 - L2 LINE L2 -1300 2014 1822 601 257 172 18 chr12 49609371 49609702 -94672787 + HAL1 LINE L1 3 384 -2123 2904 249 102 33 chr12 49609736 49610046 -94672443 + HAL1 LINE L1 1036 1323 -1184 2204 113 0 3 chr12 49610046 49610346 -94672143 + AluSx SINE Alu 1 299 -13 2904 249 102 33 chr12 49610346 49611294 -94671195 + HAL1 LINE L1 1323 2399 -108 2275 83 0 26 chr12 49611294 49611596 -94670893 + AluY SINE Alu 1 294 -17 2904 249 102 33 chr12 49611596 49611703 -94670786 + HAL1 LINE L1 2399 2497 -10 668 181 216 0 chr12 49611769 49611940 -94670549 + MER3 DNA MER1_type 1 208 -1 207 0 0 0 chr12 49612014 49612037 -94670452 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr12 49612044 49612066 -94670423 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4901 138 9 1 chr12 49612069 49612874 -94669615 - L1PA15 LINE L1 -7 6158 5348 460 229 84 28 chr12 49612877 49613056 -94669433 + L2 LINE L2 1602 1790 -1524 257 207 17 0 chr12 49613059 49613117 -94669372 + MER3 DNA MER1_type 43 101 -108 * 900 222 5 5 chr12 49613068 49613266 -94669223 - MER3 DNA MER1_type -4 205 8 710 283 39 0 chr12 49613289 49613519 -94668970 - L2 LINE L2 -1805 1509 1271 261 196 0 0 chr12 49614843 49614899 -94667590 + (TATG)n Simple_repeat Simple_repeat 2 57 0 288 287 11 11 chr12 49615516 49615610 -94666879 - MLT1I LTR MaLR -200 209 116 228 277 68 40 chr12 49615720 49615868 -94666621 + MLT1I LTR MaLR 256 407 -2 344 303 110 40 chr12 49615926 49616181 -94666308 + L1MC4a LINE L1 4587 4898 -1248 1938 158 0 0 chr12 49616181 49616494 -94665995 + AluJb SINE Alu 1 313 0 344 303 110 40 chr12 49616494 49616655 -94665834 + L1MC4a LINE L1 4898 5046 -1100 440 286 133 31 chr12 49616689 49616944 -94665545 + L1MC4a LINE L1 5106 5386 -760 267 246 16 0 chr12 49617051 49617112 -94665377 + Tigger7 DNA MER2_type 10 71 -268 * 363 191 15 0 chr12 49617105 49617173 -94665316 - Tigger7 DNA MER2_type -612 93 25 320 127 0 0 chr12 49617170 49617225 -94665264 + Tigger7 DNA MER2_type 69 123 -2364 * 759 306 39 15 chr12 49617280 49617669 -94664820 + L1MC4a LINE L1 5500 5897 -1911 241 186 0 0 chr12 49617706 49617749 -94664740 + (TA)n Simple_repeat Simple_repeat 1 43 0 258 290 39 77 chr12 49618172 49618239 -94664250 - MIR SINE MIR 0 262 194 2086 129 14 0 chr12 49618239 49618534 -94663955 - AluSx SINE Alu -13 299 1 258 290 39 77 chr12 49618534 49618673 -94663816 - MIR SINE MIR -68 194 64 499 283 96 0 chr12 49618693 49618734 -94663755 + MIR SINE MIR 61 97 -165 3979 99 67 5 chr12 49618734 49619332 -94663157 + MER41B LTR ERV1 1 635 0 499 283 96 0 chr12 49619332 49619467 -94663022 + MIR SINE MIR 97 254 -8 344 292 70 108 chr12 49619526 49619954 -94662535 + L2 LINE L2 2860 3271 -1 1524 283 156 50 chr12 49620054 49620117 -94662372 - L2 LINE L2 -6 3307 3252 1715 157 140 38 chr12 49620117 49620568 -94661921 - LTR54B LTR ERV1 -1 497 1 1524 283 156 50 chr12 49620568 49622409 -94660080 - L2 LINE L2 -61 3252 1202 287 290 39 68 chr12 49622536 49622743 -94659746 + MLT1L LTR MaLR 43 243 -372 1859 165 0 16 chr12 49622915 49623262 -94659227 - AluJo SINE Alu 0 342 1 270 130 58 43 chr12 49623287 49623356 -94659133 + MLT1K LTR MaLR 511 580 -8 2398 75 0 3 chr12 49624203 49624509 -94657980 - AluY SINE Alu -6 305 1 200 370 70 25 chr12 49624732 49624916 -94657573 - MIR3 SINE MIR -41 167 20 353 302 79 16 chr12 49625195 49625321 -94657168 + MIR SINE MIR 92 225 -37 9138 195 24 42 chr12 49625630 49626204 -94656285 + L1PA16 LINE L1 2555 3138 -3028 1486 159 3 97 chr12 49626204 49626512 -94655977 + AluJo SINE Alu 1 279 -33 984 77 35 6 chr12 49626513 49626682 -94655807 + (GAAA)n Simple_repeat Simple_repeat 1 174 0 9138 195 24 42 chr12 49626682 49629790 -94652699 + L1PA16 LINE L1 3137 6157 -9 360 254 45 45 chr12 49630273 49630383 -94652106 - MIR3 SINE MIR -30 178 69 197 382 0 0 chr12 49630399 49630467 -94652022 - MIR SINE MIR -37 225 158 946 203 52 19 chr12 49630986 49631198 -94651291 + MER20 DNA MER1_type 1 219 0 265 231 46 9 chr12 49631536 49631644 -94650845 - L1ME4a LINE L1 0 6121 6010 2488 150 73 2 chr12 49631879 49632347 -94650142 - L1MB2 LINE L1 -5 6166 5666 509 137 194 0 chr12 49633143 49633267 -94649222 - LTR47A LTR ERVL -44 408 261 711 213 98 138 chr12 49634254 49634383 -94648106 - MER34B LTR ERV1 -2 563 430 2058 100 53 13 chr12 49634383 49634682 -94647807 - AluY SINE Alu 0 311 1 711 213 98 138 chr12 49634682 49635134 -94647355 - MER34B LTR ERV1 -135 430 5 621 189 42 14 chr12 49635338 49635481 -94647008 + MER20 DNA MER1_type 31 177 -42 1586 159 3 61 chr12 49635488 49635814 -94646675 - MLT1B LTR MaLR 0 390 84 2292 115 0 0 chr12 49636247 49636551 -94645938 - AluSx SINE Alu -8 304 1 434 254 45 82 chr12 49636606 49636874 -94645615 + MIR SINE MIR 5 262 0 610 149 8 50 chr12 49637949 49638070 -94644419 + MER4C LTR ERV1 1 116 -349 1155 203 60 48 chr12 49638097 49638499 -94643990 + MER4C LTR ERV1 149 447 -18 219 253 121 81 chr12 49638598 49638697 -94643792 - L2 LINE L2 0 3272 3170 198 143 0 0 chr12 49639839 49639874 -94642615 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 22 56 0 0 chr12 49639993 49640029 -94642460 + AT_rich Low_complexity Low_complexity 1 36 0 2197 122 6 3 chr12 49640052 49640363 -94642126 + AluSp SINE Alu 1 312 -1 2511 190 30 4 chr12 49640584 49641052 -94641437 + MLT1D LTR MaLR 26 505 0 1805 145 0 24 chr12 49642737 49643026 -94639463 - AluSx SINE Alu -7 305 24 470 17 17 0 chr12 49643533 49643592 -94638897 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 2022 116 14 0 chr12 49643602 49643887 -94638602 - AluJb SINE Alu -17 295 7 881 197 13 13 chr12 49643922 49644225 -94638264 - MER93b LTR ERV1 0 402 1 371 104 0 30 chr12 49644242 49644309 -94638180 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 250 287 112 58 chr12 49645105 49645293 -94637196 + MIR SINE MIR 33 230 -32 2134 117 3 0 chr12 49645322 49645612 -94636877 + AluSx SINE Alu 1 291 -21 272 269 53 39 chr12 49647373 49647461 -94635028 + L2 LINE L2 2307 2392 -922 2361 76 0 0 chr12 49647461 49647751 -94634738 + AluY SINE Alu 1 290 -21 272 269 53 39 chr12 49647751 49647852 -94634637 + L2 LINE L2 2392 2551 -763 1358 213 42 3 chr12 49647950 49648260 -94634229 - L1MA6 LINE L1 -1 6299 5978 1133 218 58 10 chr12 49648364 49648658 -94633831 + L1ME3A LINE L1 5858 6165 -5 2090 124 14 0 chr12 49648838 49649129 -94633360 - AluSq SINE Alu -18 295 1 2007 206 53 14 chr12 49649574 49650011 -94632478 - MSTB2 LTR MaLR -3 454 1 10514 142 53 16 chr12 49650044 49651153 -94631336 + L1PA16 LINE L1 750 1949 -4900 2076 133 3 3 chr12 49651153 49651453 -94631036 + AluSx SINE Alu 1 300 -12 10514 142 53 16 chr12 49651453 49652088 -94630401 + L1PA16 LINE L1 1949 2559 -4290 9119 181 28 15 chr12 49652096 49654149 -94628340 + L1PA16 LINE L1 4024 6117 -752 2431 131 21 21 chr12 49654149 49654524 -94627965 + THE1C LTR MaLR 1 375 0 9119 181 28 15 chr12 49654524 49655288 -94627201 + L1PA16 LINE L1 6117 6869 0 274 236 187 41 chr12 49655695 49655818 -94626671 - L2 LINE L2 -40 3273 3133 568 107 33 25 chr12 49656722 49656844 -94625645 + CT-rich Low_complexity Low_complexity 1 123 0 1675 223 79 24 chr12 49656853 49657307 -94625182 - L1MB8 LINE L1 -52 6126 5648 318 282 122 6 chr12 49657696 49657877 -94624612 + L2 LINE L2 2556 2757 -557 360 183 44 88 chr12 49657955 49657983 -94624506 - L1MB7 LINE L1 -15 6169 6141 2249 60 0 69 chr12 49657983 49658149 -94624340 - AluY SINE Alu -16 295 160 531 0 0 0 chr12 49658149 49658208 -94624281 + (TA)n Simple_repeat Simple_repeat 2 60 0 2249 60 0 69 chr12 49658208 49658358 -94624131 - AluY SINE Alu -151 160 1 360 183 44 88 chr12 49658358 49658466 -94624023 - L1MB7 LINE L1 -43 6141 6039 2438 46 19 16 chr12 49658466 49658773 -94623716 - AluY SINE Alu -3 308 1 326 309 66 86 chr12 49658837 49659186 -94623303 + L2 LINE L2 2895 3236 -36 198 0 0 0 chr12 49659314 49659336 -94623153 + (CA)n Simple_repeat Simple_repeat 2 23 0 318 275 69 50 chr12 49659698 49659888 -94622601 - MIR SINE MIR -46 216 24 405 0 0 0 chr12 49659970 49660015 -94622474 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 0 0 0 chr12 49660014 49660041 -94622448 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 204 328 60 15 chr12 49660680 49660747 -94621742 - L2 LINE L2 -4 3309 3240 543 266 236 0 chr12 49661132 49661331 -94621158 + MIR SINE MIR 17 262 0 235 307 0 57 chr12 49661633 49661721 -94620768 - MIR SINE MIR -151 111 29 292 256 123 89 chr12 49662004 49662207 -94620282 - L2 LINE L2 0 3313 3104 735 293 119 63 chr12 49662260 49662784 -94619705 + L2 LINE L2 2762 3312 -1 254 197 164 0 chr12 49664133 49664194 -94618295 - L2 LINE L2 0 3272 3202 718 241 139 19 chr12 49664534 49664750 -94617739 + MLT1H1 LTR MaLR 303 544 -11 180 111 0 0 chr12 49665948 49665975 -94616514 + (CA)n Simple_repeat Simple_repeat 1 27 0 215 163 47 0 chr12 49665976 49666019 -94616470 + (CCA)n Simple_repeat Simple_repeat 1 45 0 221 231 108 0 chr12 49666792 49666857 -94615632 - MIR SINE MIR -15 247 176 2494 58 0 7 chr12 49668649 49668959 -94613530 - AluY SINE Alu -3 308 1 1873 164 29 66 chr12 49669536 49669695 -94612794 + MLT1A1 LTR MaLR 1 164 -201 2288 99 0 10 chr12 49669695 49670007 -94612482 + AluSg SINE Alu 1 309 -1 1873 164 29 66 chr12 49670007 49670226 -94612263 + MLT1A1 LTR MaLR 164 365 0 259 391 25 19 chr12 49670259 49670420 -94612069 + MIR SINE MIR 11 172 -90 2544 51 3 0 chr12 49671709 49672004 -94610485 + AluY SINE Alu 2 297 -14 244 388 45 40 chr12 49672537 49672761 -94609728 - L2 LINE L2 -47 3225 3001 302 367 8 0 chr12 49672767 49672895 -94609594 + L2 LINE L2 2501 2629 -685 222 233 14 27 chr12 49673230 49673303 -94609186 + GA-rich Low_complexity Low_complexity 2 73 0 34 24 0 0 chr12 49673469 49673510 -94608979 + AT_rich Low_complexity Low_complexity 1 41 0 1025 214 6 3 chr12 49673855 49674099 -94608390 + L1M4 LINE L1 2443 2685 -3461 2066 146 7 0 chr12 49674099 49674401 -94608088 + AluSx SINE Alu 1 304 -8 258 180 0 0 chr12 49674413 49674474 -94608015 + (TA)n Simple_repeat Simple_repeat 1 61 0 1096 233 97 11 chr12 49674483 49674843 -94607646 + L1M4 LINE L1 2707 3097 -3049 4434 171 12 4 chr12 49674846 49675589 -94606900 + Tigger1 DNA MER2_type 1 749 -1669 * 5407 83 18 0 chr12 49675588 49676300 -94606189 + Tigger1 DNA MER2_type 1363 2087 -331 2390 177 10 0 chr12 49676301 49676696 -94605793 + L1MA4A LINE L1 3 401 -6448 1298 100 0 83 chr12 49676701 49676931 -94605558 + Tigger1 DNA MER2_type 1704 1914 -504 13168 173 70 11 chr12 49676933 49678951 -94603538 + L1MA4A LINE L1 299 2488 -4361 2018 133 0 13 chr12 49678951 49679299 -94603190 - AluSx SINE Alu 0 312 1 13168 173 70 11 chr12 49679299 49679742 -94602747 + L1MA4A LINE L1 2488 2904 -3945 259 187 67 13 chr12 49679749 49679824 -94602665 + L1MA4A LINE L1 3006 3084 -3764 43559 36 22 1 chr12 49679825 49685849 -94596640 + L1PA3 LINE L1 2 6155 0 12924 178 22 16 chr12 49685855 49688719 -94593770 + L1MA4A LINE L1 3077 5974 -1031 1686 123 0 0 chr12 49688719 49688946 -94593543 + AluSq SINE Alu 79 305 -8 12924 178 22 16 chr12 49688946 49689983 -94592506 + L1MA4A LINE L1 5974 7003 -2 2001 143 14 14 chr12 49689986 49690011 -94592478 + Tigger1 DNA MER2_type 2062 2086 -332 2388 74 0 3 chr12 49690011 49690321 -94592168 + AluY SINE Alu 1 309 -2 2001 143 14 14 chr12 49690321 49690652 -94591837 + Tigger1 DNA MER2_type 2085 2418 0 1604 244 42 9 chr12 49690652 49691229 -94591260 + L1ME4a LINE L1 3099 3694 -2452 825 84 34 34 chr12 49691229 49691408 -94591081 + GA-rich Low_complexity Low_complexity 1 179 0 4368 210 34 62 chr12 49691421 49692112 -94590377 + L1ME4a LINE L1 3711 4419 -1823 1976 127 0 11 chr12 49692112 49692419 -94590070 + AluY SINE Alu 1 304 0 4368 210 34 62 chr12 49692419 49692737 -94589752 + L1ME4a LINE L1 4419 4744 -1498 1858 172 0 11 chr12 49692737 49693022 -94589467 + AluJb SINE Alu 1 282 -30 4368 210 34 62 chr12 49693022 49693685 -94588804 + L1ME4a LINE L1 4744 5338 -904 1646 110 4 61 chr12 49693685 49693948 -94588541 + AluJb SINE Alu 64 311 -1 4368 210 34 62 chr12 49693948 49694401 -94588088 + L1ME4a LINE L1 5338 5802 -440 918 288 19 29 chr12 49694403 49694701 -94587788 - MLT1J LTR MaLR -171 340 46 267 163 0 0 chr12 49694701 49694750 -94587739 - MER69 DNA AcHobo -1 2525 2477 486 246 32 0 chr12 49694780 49694906 -94587583 - MER69 DNA AcHobo -2396 130 1 226 269 45 0 chr12 49695040 49695107 -94587382 + MIR SINE MIR 95 164 -98 222 91 0 0 chr12 49695879 49695912 -94586577 + (TG)n Simple_repeat Simple_repeat 2 34 0 3577 116 2 4 chr12 49696259 49696770 -94585719 - MER9 LTR ERVK -1 510 1 2174 75 0 0 chr12 49696770 49697052 -94585437 - HERVK9 LTR ERVK 0 5916 5635 14205 76 7 1 chr12 49697145 49699057 -94583432 - HERVK9 LTR ERVK -282 5634 3711 11623 66 2 0 chr12 49699057 49700573 -94581916 - HERVK9 LTR ERVK -3130 2786 1268 4273 75 2 18 chr12 49700573 49701175 -94581314 - HERVK9 LTR ERVK -5324 592 1 3701 106 0 4 chr12 49701175 49701687 -94580802 - MER9 LTR ERVK 0 511 2 2126 216 81 14 chr12 49702556 49703064 -94579425 + MLT1F LTR MaLR 1 542 0 4702 96 42 1 chr12 49703573 49704263 -94578226 + L1PB1 LINE L1 5426 6143 -8 180 0 0 0 chr12 49704269 49704289 -94578200 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 274 328 16 70 chr12 49704875 49705061 -94577428 + MIR SINE MIR 68 243 -19 1848 161 0 23 chr12 49705082 49705392 -94577097 - AluJb SINE Alu -9 303 1 369 253 67 13 chr12 49706001 49706151 -94576338 + L1ME4a LINE L1 5962 6119 -2 27089 86 12 4 chr12 49706915 49710842 -94571647 - L1P LINE L1 -2186 3960 1 1624 88 9 4 chr12 49710844 49711071 -94571418 - THE1B LTR MaLR -136 228 1 220 290 0 16 chr12 49711077 49711139 -94571350 + L2 LINE L2 3000 3060 -212 488 220 73 61 chr12 49711532 49711737 -94570752 + MIR SINE MIR 3 262 0 296 297 117 8 chr12 49712283 49712411 -94570078 + MLT1K LTR MaLR 73 214 -374 297 0 0 0 chr12 49712552 49712585 -94569904 + (CA)n Simple_repeat Simple_repeat 2 34 0 250 255 102 10 chr12 49712621 49712719 -94569770 + MLT1K LTR MaLR 454 560 -28 295 206 15 0 chr12 49713716 49713784 -94568705 + MER94 DNA DNA 1 69 -65 3231 237 93 46 chr12 49713792 49714113 -94568376 + L1MEc LINE L1 35 339 -6057 336 24 0 0 chr12 49714113 49714154 -94568335 + (GA)n Simple_repeat Simple_repeat 1 41 0 3231 237 93 46 chr12 49714154 49715216 -94567273 + L1MEc LINE L1 339 1483 -4913 2008 215 65 18 chr12 49715202 49715867 -94566622 + L1MEc LINE L1 1700 2395 -4001 * 34 0 0 0 chr12 49716681 49716715 -94565774 + AT_rich Low_complexity Low_complexity 1 34 0 15421 101 7 4 chr12 49716715 49719764 -94562725 - L1PA7 LINE L1 -11 6143 3088 1980 173 24 0 chr12 49719888 49720217 -94562272 - MER1B DNA MER1_type 0 337 1 961 255 43 18 chr12 49720651 49720933 -94561556 - MER67C LTR ERV1 -385 325 37 186 150 0 0 chr12 49721412 49721452 -94561037 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 25 31 0 0 chr12 49721570 49721602 -94560887 + AT_rich Low_complexity Low_complexity 1 32 0 1961 121 7 0 chr12 49721605 49721877 -94560612 - AluSx SINE Alu -5 307 34 803 185 15 0 chr12 49722485 49722615 -94559874 + FLAM_C SINE Alu 1 132 -11 2691 93 11 16 chr12 49723283 49723660 -94558829 + THE1C LTR MaLR 1 375 0 2318 59 3 3 chr12 49724061 49724347 -94558142 + AluY SINE Alu 16 301 -10 837 223 135 63 chr12 49725042 49725473 -94557016 + MLT1H LTR MaLR 73 534 -15 180 77 0 0 chr12 49725594 49725620 -94556869 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2382 137 3 3 chr12 49725666 49726003 -94556486 + MER1B DNA MER1_type 1 337 0 511 347 16 41 chr12 49726188 49726433 -94556056 - MIR SINE MIR -21 241 3 16118 190 17 32 chr12 49727201 49732151 -94550338 + L1PA15-16 LINE L1 1 4844 -2005 2174 19 4 4 chr12 49732151 49732410 -94550079 + L1PA2 LINE L1 5890 6148 -7 16118 190 17 32 chr12 49732410 49733170 -94549319 + L1PA15-16 LINE L1 4844 5614 -1235 1209 193 33 96 chr12 49733170 49733564 -94548925 - LTR8 LTR ERV1 -322 369 1 348 251 69 50 chr12 49735198 49735431 -94547058 - L1ME4a LINE L1 -180 5941 5710 453 280 84 70 chr12 49735497 49735995 -94546494 - L1ME4a LINE L1 -630 5532 5042 2334 73 36 10 chr12 49735995 49736297 -94546192 - AluY SINE Alu -1 310 1 453 280 84 70 chr12 49736297 49736803 -94545686 - L1ME4a LINE L1 -1120 5042 4506 222 307 184 0 chr12 49737388 49737502 -94544987 - MIR SINE MIR 0 262 128 1987 137 0 0 chr12 49739659 49739964 -94542525 + AluSc SINE Alu 1 305 0 1498 234 59 98 chr12 49740108 49740825 -94541664 + MER21B LTR ERV1 13 701 -162 2503 110 41 14 chr12 49741540 49741905 -94540584 + THE1C LTR MaLR 1 375 0 534 275 28 9 chr12 49741943 49742118 -94540371 + MER77 LTR ERV1 247 426 -179 1564 211 80 51 chr12 49742530 49742980 -94539509 - MLT1C LTR MaLR -4 463 1 205 266 32 96 chr12 49743020 49743114 -94539375 + MIR SINE MIR 119 206 -56 384 22 0 0 chr12 49744754 49744799 -94537690 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 1057 236 5 14 chr12 49744869 49745081 -94537408 - MER82 DNA MER2_type 0 653 444 393 294 44 22 chr12 49745115 49745295 -94537194 + MIR SINE MIR 4 187 -75 267 302 0 0 chr12 49745368 49745431 -94537058 - MER82 DNA MER2_type -577 76 14 882 279 83 53 chr12 49746314 49746730 -94535759 - MLT1J2 LTR MaLR 0 511 13 582 323 109 34 chr12 49747195 49747607 -94534882 + LTR67 LTR ERVL 114 556 -1 549 183 32 40 chr12 49748245 49748371 -94534118 + MIR SINE MIR 63 187 -75 437 293 8 8 chr12 49748381 49748514 -94533975 - LTR67 LTR ERVL -7 550 418 242 245 19 0 chr12 49748741 49748794 -94533695 - MER63 DNA MER1_type -29 1033 980 506 158 0 12 chr12 49748800 49748882 -94533607 - MER63 DNA MER1_type -90 746 40 22 0 0 0 chr12 49749598 49749620 -94532869 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 49749773 49749801 -94532688 + AT_rich Low_complexity Low_complexity 1 28 0 199 305 84 38 chr12 49750164 49750295 -94532194 + MIR3 SINE MIR 9 145 -63 31262 109 10 21 chr12 49750350 49756629 -94525860 + L1PA7 LINE L1 163 6467 -2 434 261 137 38 chr12 49758381 49758592 -94523897 - MIR SINE MIR 0 262 31 1691 198 86 56 chr12 49758608 49759038 -94523451 - LTR47B LTR ERVL 0 443 1 1153 249 114 27 chr12 49759754 49760203 -94522286 - L2 LINE L2 -868 2446 1959 216 341 30 78 chr12 49760569 49760736 -94521753 + L2 LINE L2 2901 3059 -213 4750 31 2 16 chr12 49761115 49761665 -94520824 + L1PA4 LINE L1 5613 6154 -1 24 0 0 0 chr12 49761993 49762017 -94520472 + AT_rich Low_complexity Low_complexity 1 24 0 358 301 134 16 chr12 49762357 49762543 -94519946 - L3b LINE CR1 -31 1552 1345 394 311 221 14 chr12 49762598 49762955 -94519534 - MLT1L LTR MaLR -8 607 177 272 309 103 29 chr12 49763337 49763473 -94519016 + MIR SINE MIR 84 229 -33 27 22 0 22 chr12 49763908 49763920 -94518569 + AT_rich Low_complexity Low_complexity 1 12 -32 11732 67 3 3 chr12 49763920 49766126 -94516363 + L1PA5 LINE L1 3950 6154 0 27 22 0 22 chr12 49766126 49766158 -94516331 + AT_rich Low_complexity Low_complexity 12 44 0 1090 143 0 0 chr12 49766158 49766312 -94516177 + THE1B LTR MaLR 211 364 0 6599 111 74 16 chr12 49766312 49767334 -94515155 + THE1B-int LTR MaLR 1 1082 -498 955 117 0 0 chr12 49767335 49767463 -94515026 + MLT2A2 LTR ERVL 326 453 0 702 256 40 48 chr12 49768263 49768375 -94514114 + MIR SINE MIR 32 143 -119 2285 101 0 0 chr12 49768375 49768696 -94513793 + AluY SINE Alu 1 321 0 702 256 40 48 chr12 49768696 49768808 -94513681 + MIR SINE MIR 143 256 -6 2627 111 25 5 chr12 49768946 49769314 -94513175 - THE1C LTR MaLR 0 375 1 6944 121 6 10 chr12 49769314 49770316 -94512173 - THE1C-int LTR MaLR 0 1580 583 245 170 64 0 chr12 49770417 49770464 -94512025 + L1MC/D LINE L1 5690 5739 -2069 1699 164 37 0 chr12 49771111 49771428 -94511061 - AluJb SINE Alu 0 331 5 266 321 84 32 chr12 49771871 49772061 -94510428 - MIR SINE MIR 0 262 63 292 308 43 8 chr12 49772165 49772282 -94510207 + MIR SINE MIR 34 154 -108 377 200 80 0 chr12 49772728 49772828 -94509661 - L1MA4A LINE L1 -2 7003 6896 3203 148 38 58 chr12 49772833 49773484 -94509005 - L1MA4A LINE L1 -184 6821 6184 * 30092 122 17 64 chr12 49773483 49779954 -94502535 - L1PA8 LINE L1 -2 6170 8 14782 207 20 26 chr12 49779950 49780743 -94501746 - L1MA4A LINE L1 -743 6105 5309 * 1497 218 0 31 chr12 49780743 49781036 -94501453 - AluJo SINE Alu -16 286 3 14782 207 20 26 chr12 49781036 49781369 -94501120 - L1MA4A LINE L1 -1539 5309 4975 432 0 0 0 chr12 49781369 49781417 -94501072 + (TG)n Simple_repeat Simple_repeat 2 49 0 14782 207 20 26 chr12 49781417 49786541 -94495948 - L1MA4A LINE L1 -1873 4975 1 493 267 62 7 chr12 49787219 49787365 -94495124 + MLT1I LTR MaLR 256 409 0 181 268 73 106 chr12 49787367 49787613 -94494876 + L2 LINE L2 2093 2330 -984 * 358 367 109 27 chr12 49787584 49787731 -94494758 - L2 LINE L2 -4 3268 3110 557 266 69 17 chr12 49788221 49788394 -94494095 - MIR SINE MIR -11 251 70 1890 174 7 0 chr12 49789386 49789696 -94492793 + AluSx SINE Alu 1 312 0 1011 58 11 63 chr12 49789711 49789901 -94492588 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1297 211 53 51 chr12 49790246 49790696 -94491793 + L1MC5 LINE L1 7416 7866 -95 251 232 43 0 chr12 49791305 49791374 -94491115 - MIR SINE MIR -16 246 175 1678 82 124 47 chr12 49791543 49791831 -94490658 + AluSx SINE Alu 5 312 0 858 334 64 38 chr12 49791873 49792618 -94489871 - L2 LINE L2 -205 3067 2308 180 279 0 0 chr12 49793157 49793200 -94489289 + MIR SINE MIR 81 123 -85 284 0 0 27 chr12 49793805 49793842 -94488647 + (TAA)n Simple_repeat Simple_repeat 2 37 0 857 230 111 0 chr12 49793844 49794070 -94488419 - MIR SINE MIR -11 251 1 298 186 98 59 chr12 49794422 49794524 -94487965 - MLT2E LTR ERVL -488 140 35 758 272 34 46 chr12 49794625 49794815 -94487674 + MLT1F LTR MaLR 1 189 -353 387 41 0 0 chr12 49794815 49794864 -94487625 + (TC)n Simple_repeat Simple_repeat 1 49 0 758 272 34 46 chr12 49794864 49794912 -94487577 + MLT1F LTR MaLR 189 236 -306 200 273 23 23 chr12 49795924 49796012 -94486477 + GA-rich Low_complexity Low_complexity 5 92 0 2008 153 0 13 chr12 49797973 49798280 -94484209 + AluSx SINE Alu 1 303 -9 904 214 47 12 chr12 49798302 49798541 -94483948 + MIR SINE MIR 19 261 -1 573 162 38 9 chr12 49799784 49799889 -94482600 + MIR SINE MIR 110 217 -45 1083 145 41 98 chr12 49799889 49800166 -94482323 + L1MC3 LINE L1 6854 7098 -687 493 225 26 1 chr12 49800169 49800277 -94482212 + MLT1F1 LTR MaLR 49 166 -383 972 202 14 5 chr12 49800277 49800485 -94482004 + L1MD3 LINE L1 7425 7634 -361 3258 152 19 15 chr12 49800485 49801026 -94481463 - Tigger1 DNA MER2_type 0 2418 1876 * 4097 126 8 0 chr12 49801020 49801615 -94480874 - Tigger1 DNA MER2_type -1521 897 298 1279 137 13 30 chr12 49801631 49801865 -94480624 + L1MD3 LINE L1 7766 7995 0 267 191 73 44 chr12 49801866 49801934 -94480555 + MIR SINE MIR 193 262 0 636 235 9 47 chr12 49802313 49802507 -94479982 + MER5A DNA MER1_type 1 186 -3 4633 170 33 17 chr12 49802602 49802802 -94479687 + L1MB5 LINE L1 5268 5463 -711 1607 151 72 41 chr12 49802802 49803093 -94479396 + AluJb SINE Alu 1 300 -12 4633 170 33 17 chr12 49803093 49803775 -94478714 + L1MB5 LINE L1 5463 6165 -9 438 353 47 13 chr12 49804144 49804379 -94478110 - L3b LINE CR1 -232 1351 1109 262 234 26 0 chr12 49804789 49804866 -94477623 - MER116 DNA Mariner 0 80 2 23 0 0 0 chr12 49805231 49805254 -94477235 + AT_rich Low_complexity Low_complexity 1 23 0 1431 158 94 38 chr12 49805553 49805818 -94476671 + AluJo SINE Alu 11 290 -22 2641 168 36 5 chr12 49805976 49806423 -94476066 + LOR1b LTR ERV1 1 461 0 796 279 143 29 chr12 49807501 49807977 -94474512 + L1ME4a LINE L1 5371 5900 -221 2185 125 3 6 chr12 49808537 49808850 -94473639 + AluSx SINE Alu 1 312 0 748 286 34 21 chr12 49808951 49809185 -94473304 + MIR SINE MIR 25 261 -1 3624 128 68 0 chr12 49809226 49809755 -94472734 + MER61E LTR ERV1 1 565 -4 538 310 45 19 chr12 49809856 49810166 -94472323 + L1ME4a LINE L1 5597 5914 -207 252 338 103 14 chr12 49810869 49811014 -94471475 + MIR3 SINE MIR 18 175 -33 288 0 0 0 chr12 49811187 49811219 -94471270 + (TG)n Simple_repeat Simple_repeat 1 32 0 590 71 0 59 chr12 49812475 49812560 -94469929 + MADE1 DNA Mariner 1 80 0 190 81 54 0 chr12 49816108 49816145 -94466344 + (TTTAA)n Simple_repeat Simple_repeat 1 39 0 541 241 103 40 chr12 49816357 49816447 -94466042 + MLT1J LTR MaLR 3 86 -425 2360 63 0 10 chr12 49816447 49816746 -94465743 - AluY SINE Alu -15 296 1 541 241 103 40 chr12 49816746 49816829 -94465660 + MLT1J LTR MaLR 86 187 -324 929 266 59 46 chr12 49816945 49817079 -94465410 - MLT1J LTR MaLR -203 308 177 1800 138 37 34 chr12 49817079 49817375 -94465114 - AluSx SINE Alu -15 297 1 929 266 59 46 chr12 49817375 49817544 -94464945 - MLT1J LTR MaLR -334 177 1 1997 129 3 3 chr12 49817754 49818041 -94464448 - AluJb SINE Alu -25 287 1 405 200 186 35 chr12 49818042 49818187 -94464302 + MER21B LTR ERV1 696 862 -1 974 161 67 17 chr12 49818398 49818578 -94463911 + MER53 DNA DNA 1 189 0 24 67 0 0 chr12 49819133 49819178 -94463311 + AT_rich Low_complexity Low_complexity 1 45 0 219 402 40 11 chr12 49819212 49819386 -94463103 - MIR SINE MIR -50 212 34 1654 242 114 31 chr12 49819542 49820084 -94462405 - MLT1E LTR MaLR -4 589 3 845 301 42 0 chr12 49820870 49821109 -94461380 - MIR SINE MIR 0 262 14 2108 175 11 6 chr12 49821302 49821656 -94460833 - MLT1A1 LTR MaLR 0 365 10 568 163 0 0 chr12 49821753 49821851 -94460638 - L1MA4 LINE L1 -6 6294 6197 2152 126 0 0 chr12 49822366 49822660 -94459829 + AluSx SINE Alu 5 298 -14 369 185 0 0 chr12 49823567 49823632 -94458857 - MER41B LTR ERV1 -92 543 479 2087 115 0 7 chr12 49823672 49823968 -94458521 + AluSx SINE Alu 13 306 -6 6215 181 40 14 chr12 49823968 49826173 -94456316 - L1MB7 LINE L1 -12 6172 3907 955 266 91 63 chr12 49826184 49826646 -94455843 - MLT1H LTR MaLR 0 549 75 459 276 136 4 chr12 49827612 49827699 -94454790 - MIR SINE MIR 0 262 188 2063 128 73 73 chr12 49827699 49828083 -94454406 - MLT1B LTR MaLR -3 387 4 459 276 136 4 chr12 49828083 49828223 -94454266 - MIR SINE MIR -74 188 5 280 271 116 47 chr12 49828812 49828941 -94453548 + L2 LINE L2 3175 3312 -1 189 0 0 0 chr12 49828949 49828970 -94453519 + (CCCTA)n Simple_repeat Simple_repeat 3 23 0 23 33 0 0 chr12 49830073 49830103 -94452386 + AT_rich Low_complexity Low_complexity 1 30 0 908 61 9 0 chr12 49831123 49831238 -94451251 + L1MA2 LINE L1 6189 6304 0 591 238 41 23 chr12 49831328 49831500 -94450989 - MLT1H LTR MaLR 0 549 375 321 263 0 59 chr12 49831619 49831737 -94450752 + GA-rich Low_complexity Low_complexity 5 115 0 280 208 52 39 chr12 49831742 49831819 -94450670 - MLT1H LTR MaLR -316 233 156 2405 91 0 0 chr12 49832286 49832595 -94449894 + AluY SINE Alu 1 309 -2 395 248 45 15 chr12 49832946 49833079 -94449410 - MER113 DNA MER1_type? -377 144 8 1689 235 109 59 chr12 49833142 49833840 -94448649 + Charlie7 DNA MER1_type 7 739 -1873 503 242 74 19 chr12 49833862 49834053 -94448436 + Charlie7 DNA MER1_type 2386 2592 -20 913 85 78 16 chr12 49834053 49834182 -94448307 - MER85 DNA T2_type -2 137 1 503 242 74 19 chr12 49834182 49834205 -94448284 + Charlie7 DNA MER1_type 2592 2612 0 1750 140 33 0 chr12 49835391 49835662 -94446827 - AluJb SINE Alu -32 280 1 2979 267 140 44 chr12 49836015 49836229 -94446260 - L2 LINE L2 0 3313 3121 2088 122 10 13 chr12 49836229 49836532 -94445957 - AluSx SINE Alu -10 302 1 2979 267 140 44 chr12 49836532 49837901 -94444588 - L2 LINE L2 -192 3121 1559 612 265 124 8 chr12 49837919 49838153 -94444336 - MIR SINE MIR 0 262 2 291 203 0 0 chr12 49838783 49838847 -94443642 + CT-rich Low_complexity Low_complexity 2 65 0 192 125 0 0 chr12 49838999 49839031 -94443458 + (TCC)n Simple_repeat Simple_repeat 1 32 0 2195 110 27 3 chr12 49839363 49839663 -94442826 + AluSx SINE Alu 1 307 -5 375 288 43 113 chr12 49839927 49840184 -94442305 + L2 LINE L2 3032 3270 -2 272 284 122 14 chr12 49840684 49840832 -94441657 + L1MC4a LINE L1 5746 5909 -1899 2015 68 0 4 chr12 49840882 49841131 -94441358 - AluY SINE Alu -4 307 60 298 230 185 22 chr12 49841487 49841622 -94440867 + MIR3 SINE MIR 37 193 -15 355 250 92 92 chr12 49842566 49842794 -94439695 + MIR SINE MIR 28 255 -7 210 313 27 27 chr12 49842895 49843007 -94439482 + MIR SINE MIR 76 187 -75 421 297 58 14 chr12 49843118 49843256 -94439233 - MIR3 SINE MIR -32 176 33 300 277 21 43 chr12 49843401 49843495 -94438994 + L2 LINE L2 3179 3270 -2 468 229 9 0 chr12 49845112 49845217 -94437272 - MIR SINE MIR -61 201 96 26 0 0 0 chr12 49845310 49845336 -94437153 + AT_rich Low_complexity Low_complexity 1 26 0 2084 106 3 40 chr12 49845339 49845640 -94436849 - AluSq SINE Alu -23 290 1 22 0 0 0 chr12 49845993 49846015 -94436474 + AT_rich Low_complexity Low_complexity 1 22 0 450 259 0 28 chr12 49847379 49847487 -94435002 + L2 LINE L2 3200 3304 -9 1377 144 35 31 chr12 49847523 49847780 -94434709 + L1MC1 LINE L1 6076 6333 0 2171 113 17 0 chr12 49847945 49848238 -94434251 + AluSq SINE Alu 1 298 -15 2403 91 3 0 chr12 49848238 49848544 -94433945 + AluSp SINE Alu 1 308 -5 599 262 92 86 chr12 49848663 49848966 -94433523 - L1MC4 LINE L1 -218 7824 7524 2668 143 33 21 chr12 49848966 49849387 -94433102 + MSTA LTR MaLR 1 426 -2 599 262 92 86 chr12 49849387 49849828 -94432661 - L1MC4 LINE L1 -518 7524 7087 2188 122 0 0 chr12 49849828 49850122 -94432367 + AluSg SINE Alu 1 294 -16 599 262 92 86 chr12 49850122 49850684 -94431805 - L1MC4 LINE L1 -955 7087 6602 2445 82 10 0 chr12 49850684 49850990 -94431499 - AluY SINE Alu -2 309 1 599 262 92 86 chr12 49850990 49851181 -94431308 - L1MC4 LINE L1 -1440 6602 6414 209 182 0 0 chr12 49851478 49851511 -94430978 + polypyrimidine Low_complexity Low_complexity 2 34 0 2489 208 62 6 chr12 49851802 49852330 -94430159 + L1MC4 LINE L1 6459 7016 -1026 653 80 45 0 chr12 49852333 49852421 -94430068 - MSTA LTR MaLR -3 425 334 1420 237 92 3 chr12 49852444 49852790 -94429699 - L1MC4 LINE L1 -1099 6943 6567 1906 168 18 15 chr12 49852790 49853118 -94429371 - MSTB LTR MaLR -97 329 1 866 238 142 23 chr12 49853181 49853834 -94428655 + L1MD3 LINE L1 7240 7992 -3 1270 223 234 35 chr12 49853851 49854397 -94428092 - L1MC4a LINE L1 -1788 6020 5366 2536 51 3 0 chr12 49854919 49855215 -94427274 + AluY SINE Alu 2 298 -13 421 279 110 7 chr12 49856604 49856740 -94425749 + MIR SINE MIR 20 169 -93 372 317 5 43 chr12 49856797 49856983 -94425506 - MIR SINE MIR 0 262 84 707 215 73 49 chr12 49857090 49857295 -94425194 + MER63A DNA MER1_type 1 210 0 820 120 24 0 chr12 49857596 49857721 -94424768 - MLT-int LTR MaLR -120 1615 1488 2299 128 22 35 chr12 49857726 49858094 -94424395 - THE1B LTR MaLR 0 364 2 12234 103 5 4 chr12 49858095 49859673 -94422816 - THE1B-int LTR MaLR 0 1580 1 2399 117 19 35 chr12 49859675 49860043 -94422446 - THE1B LTR MaLR -2 362 1 1506 156 3 62 chr12 49860197 49860485 -94422004 + MLT-int LTR MaLR 1317 1587 -148 928 177 86 65 chr12 49860485 49860717 -94421772 + LTR8A LTR ERV1 489 725 -2 335 219 0 0 chr12 49860807 49860871 -94421618 - MLT-int LTR MaLR -993 742 679 3065 177 128 7 chr12 49860995 49861605 -94420884 - MLT1A2-int LTR MaLR -1050 685 2 1596 171 42 66 chr12 49861605 49861814 -94420675 - MLT1A2 LTR MaLR -2 372 175 2417 89 0 6 chr12 49861814 49862129 -94420360 - AluSq SINE Alu 0 313 1 1596 171 42 66 chr12 49862129 49862299 -94420190 - MLT1A2 LTR MaLR -199 175 2 224 313 100 44 chr12 49862769 49862929 -94419560 + L2 LINE L2 2562 2730 -584 314 313 19 44 chr12 49863106 49863266 -94419223 + L2 LINE L2 3158 3313 0 310 360 15 22 chr12 49863279 49863415 -94419074 + L2 LINE L2 2925 3059 -213 288 0 0 0 chr12 49863428 49863460 -94419029 + (CA)n Simple_repeat Simple_repeat 1 32 0 498 274 206 16 chr12 49863654 49863906 -94418583 + MLT1J2 LTR MaLR 151 450 0 302 267 86 26 chr12 49863948 49864064 -94418425 + L2 LINE L2 3136 3258 -14 705 210 81 27 chr12 49864667 49864853 -94417636 - MLT1A2 LTR MaLR 0 374 179 2792 153 14 2 chr12 49864923 49865349 -94417140 + MSTB1 LTR MaLR 2 432 0 7374 196 83 4 chr12 49865350 49866795 -94415694 + MSTB1-int LTR MaLR 2 1560 -91 299 200 0 0 chr12 49866809 49866859 -94415630 - MLT1A2 LTR MaLR -346 50 1 2445 238 78 0 chr12 49866859 49867398 -94415091 - MLT1A2-int LTR MaLR 0 1735 1155 2288 196 39 83 chr12 49867393 49867958 -94414531 - MLT1A2-int LTR MaLR -841 894 355 * 1018 212 27 46 chr12 49867958 49868217 -94414272 - MLT1A1 LTR MaLR -98 267 14 227 160 80 0 chr12 49869930 49869980 -94412509 + MER53 DNA DNA 24 77 -112 333 156 294 28 chr12 49870034 49870143 -94412346 + MER53 DNA DNA 51 188 -1 231 309 25 25 chr12 49870146 49870227 -94412262 - MIR SINE MIR -111 97 17 1715 142 158 28 chr12 49871955 49872278 -94410211 + MLT1A1 LTR MaLR 1 365 0 543 264 138 17 chr12 49874077 49874308 -94408181 - MIR SINE MIR 0 262 4 920 269 95 81 chr12 49874352 49874824 -94407665 - L2 LINE L2 0 3313 2835 209 312 0 65 chr12 49874854 49874947 -94407542 + L2 LINE L2 3186 3272 0 261 0 0 0 chr12 49875177 49875206 -94407283 + (TG)n Simple_repeat Simple_repeat 2 30 0 1139 172 0 47 chr12 49875757 49875972 -94406517 + AluJo SINE Alu 87 291 -21 309 295 164 22 chr12 49876061 49876244 -94406245 + MIR SINE MIR 34 242 -20 30725 113 16 59 chr12 49876783 49883223 -94399266 + L1PA8 LINE L1 12 6163 -9 55 0 0 0 chr12 49883242 49883297 -94399192 + AT_rich Low_complexity Low_complexity 1 55 0 320 308 25 138 chr12 49883355 49883755 -94398734 + L2 LINE L2 2914 3268 -4 232 351 44 0 chr12 49883767 49883881 -94398608 + MIR SINE MIR 93 211 -51 1120 318 80 21 chr12 49883984 49884711 -94397778 - L2 LINE L2 -78 3235 2461 1865 174 45 20 chr12 49884721 49884973 -94397516 - MLT1A1 LTR MaLR 0 365 100 2731 116 57 5 chr12 49884973 49885380 -94397109 - MSTA LTR MaLR 0 428 1 1865 174 45 20 chr12 49885380 49885483 -94397006 - MLT1A1 LTR MaLR -265 100 1 216 0 0 0 chr12 49885586 49885610 -94396879 + (TG)n Simple_repeat Simple_repeat 2 25 0 229 65 0 0 chr12 49885618 49885664 -94396825 - LTR66 LTR ERVL -171 439 394 257 98 0 0 chr12 49885710 49885751 -94396738 - LTR66 LTR ERVL -172 438 398 247 273 23 23 chr12 49885751 49885839 -94396650 - L1MC4 LINE L1 -1339 6703 6616 232 299 46 0 chr12 49885845 49885932 -94396557 - L1MC4 LINE L1 -1339 6703 6613 238 143 0 0 chr12 49885933 49885975 -94396514 - LTR66 LTR ERVL -171 439 398 206 260 0 0 chr12 49885975 49886025 -94396464 + (TA)n Simple_repeat Simple_repeat 2 51 0 226 167 0 0 chr12 49886027 49886069 -94396420 - LTR66 LTR ERVL -171 439 398 192 179 0 0 chr12 49886076 49886115 -94396374 + (TA)n Simple_repeat Simple_repeat 2 40 0 227 191 0 0 chr12 49886115 49886157 -94396332 - LTR66 LTR ERVL -171 439 398 260 303 0 0 chr12 49886184 49886273 -94396216 - L1MC4 LINE L1 -1340 6702 6614 267 215 0 0 chr12 49886286 49886351 -94396138 + (TA)n Simple_repeat Simple_repeat 2 66 0 242 180 0 33 chr12 49886351 49886412 -94396077 - L1MC3 LINE L1 -1139 6646 6588 240 269 0 21 chr12 49886387 49886480 -94396009 - L1MC4 LINE L1 -1339 6703 6613 * 236 118 0 59 chr12 49886485 49886553 -94395936 + (TA)n Simple_repeat Simple_repeat 2 65 0 236 203 22 26 chr12 49886563 49886653 -94395836 + L1MC3 LINE L1 6588 6646 -1139 306 278 0 0 chr12 49886659 49886767 -94395722 + (TA)n Simple_repeat Simple_repeat 2 109 0 240 337 0 0 chr12 49886790 49886879 -94395610 + L1MC4 LINE L1 6614 6702 -1340 467 252 6 0 chr12 49886888 49887047 -94395442 + (TA)n Simple_repeat Simple_repeat 2 161 0 225 231 31 0 chr12 49887049 49887114 -94395375 - L1MC3 LINE L1 -1131 6654 6588 * 253 294 47 0 chr12 49887057 49887142 -94395347 + L1MC4 LINE L1 6614 6702 -1340 225 191 0 0 chr12 49887165 49887207 -94395282 + LTR66 LTR ERVL 398 439 -171 526 356 0 6 chr12 49887212 49887392 -94395097 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 228 348 0 11 chr12 49887418 49887510 -94394979 + L1MC4 LINE L1 6613 6703 -1339 188 294 0 11 chr12 49887514 49887606 -94394883 + (TA)n Simple_repeat Simple_repeat 1 91 0 244 125 0 0 chr12 49887611 49887651 -94394838 + LTR66 LTR ERVL 398 437 -173 779 193 64 12 chr12 49887656 49887827 -94394662 + L1MDa LINE L1 177 356 -6184 1139 250 70 12 chr12 49887844 49888244 -94394245 - L1M4 LINE L1 -2280 3866 3444 370 212 18 44 chr12 49888670 49888783 -94393706 - HAL1 LINE L1 -1029 1478 1369 819 138 0 0 chr12 49888783 49888906 -94393583 - AluSg/x SINE Alu -2 310 188 926 179 22 34 chr12 49888908 49889087 -94393402 + AluSx SINE Alu 3 179 -133 773 122 9 9 chr12 49889699 49889814 -94392675 - AluSg1 SINE Alu -194 115 1 346 266 56 13 chr12 49889824 49890045 -94392444 + L1MC5 LINE L1 7041 7258 -550 806 281 58 76 chr12 49890147 49890255 -94392234 + L1MC5 LINE L1 7310 7418 -543 2596 143 33 21 chr12 49890255 49890676 -94391813 - MSTA LTR MaLR -2 426 1 806 281 58 76 chr12 49890676 49890977 -94391512 + L1MC5 LINE L1 7418 7712 -249 1930 148 3 3 chr12 49891096 49891406 -94391083 - AluSq SINE Alu -3 310 1 1269 153 38 46 chr12 49891447 49891709 -94390780 + AluJo SINE Alu 1 260 -52 559 240 70 0 chr12 49892601 49892730 -94389759 + MIR SINE MIR 100 237 -25 196 344 141 25 chr12 49893102 49893265 -94389224 + MER5A DNA MER1_type 1 182 -7 742 147 0 0 chr12 49896231 49896340 -94386149 - FLAM_C SINE Alu -34 109 1 2184 130 0 0 chr12 49896355 49896663 -94385826 - AluSc SINE Alu -1 308 1 250 297 47 54 chr12 49897631 49897779 -94384710 + L3b LINE CR1 1290 1436 -147 1068 249 12 12 chr12 49897962 49898211 -94384278 - MIR SINE MIR 0 262 14 895 236 29 37 chr12 49898664 49898910 -94383579 - MIR SINE MIR -6 256 13 323 258 41 10 chr12 49898958 49899055 -94383434 - MER103 DNA DNA -66 100 1 397 310 110 0 chr12 49899133 49899288 -94383201 + MIR SINE MIR 1 172 -90 191 253 141 61 chr12 49899334 49899433 -94383056 + MIR3 SINE MIR 99 205 -3 218 250 0 17 chr12 49899542 49899602 -94382887 + (CTGGGG)n Simple_repeat Simple_repeat 6 64 0 767 260 47 43 chr12 49900613 49900867 -94381622 - MIR SINE MIR 0 262 8 373 244 24 49 chr12 49902447 49902570 -94379919 + MIR3 SINE MIR 68 187 -21 483 294 136 44 chr12 49902579 49902807 -94379682 + MIR SINE MIR 14 262 0 285 302 21 0 chr12 49904709 49904805 -94377684 + MER117 DNA MER1_type 100 197 0 264 309 15 0 chr12 49905855 49905923 -94376566 + MIR SINE MIR 10 78 -184 490 337 85 0 chr12 49907121 49907403 -94375086 + L2 LINE L2 2882 3187 -126 619 234 114 0 chr12 49908745 49908952 -94373537 + MIR SINE MIR 1 239 -23 973 264 33 0 chr12 49909993 49910235 -94372254 + MIR SINE MIR 13 262 0 367 301 96 34 chr12 49910191 49910400 -94372089 - MIR SINE MIR 0 262 41 * 321 282 24 0 chr12 49910407 49910488 -94372001 - L2 LINE L2 -1 3312 3230 905 249 49 12 chr12 49910488 49910733 -94371756 + MIR SINE MIR 1 254 -8 266 191 0 0 chr12 49910980 49911027 -94371462 - L2 LINE L2 -17 3296 3250 279 333 69 13 chr12 49911362 49911521 -94370968 - MIR SINE MIR -8 254 87 195 204 0 0 chr12 49913813 49913867 -94368622 + GA-rich Low_complexity Low_complexity 2 55 0 300 215 25 0 chr12 49914218 49914297 -94368192 + CT-rich Low_complexity Low_complexity 1 81 0 213 337 112 0 chr12 49917129 49917236 -94365253 + MIR SINE MIR 35 152 -69 343 219 140 53 chr12 49918730 49918844 -94363645 - MIR SINE MIR -74 188 65 1330 199 109 0 chr12 49919055 49919322 -94363167 + AluJo SINE Alu 1 296 -16 262 238 36 60 chr12 49920565 49920649 -94361840 + MIR3 SINE MIR 90 171 -37 2348 74 7 0 chr12 49921631 49921927 -94360562 - AluY SINE Alu -13 298 1 2188 114 0 9 chr12 49921935 49922250 -94360239 - AluSx SINE Alu 0 312 1 972 261 52 12 chr12 49922334 49922583 -94359906 - MIR SINE MIR -2 260 2 286 279 25 0 chr12 49922642 49922721 -94359768 + L2 LINE L2 3232 3312 -1 290 243 66 29 chr12 49923811 49923947 -94358542 - L2 LINE L2 -191 3081 2941 202 302 0 19 chr12 49924605 49924658 -94357831 + L2 LINE L2 3258 3309 -4 297 0 0 0 chr12 49925030 49925063 -94357426 + (TC)n Simple_repeat Simple_repeat 2 34 0 297 0 0 0 chr12 49925066 49925099 -94357390 + (TG)n Simple_repeat Simple_repeat 2 34 0 288 299 65 0 chr12 49925309 49925416 -94357073 + L3 LINE CR1 1444 1557 -20 799 252 104 9 chr12 49925494 49925724 -94356765 + MIR SINE MIR 2 253 -9 1928 119 36 7 chr12 49926280 49926558 -94355931 + AluSx SINE Alu 1 286 -26 300 250 28 0 chr12 49926760 49926832 -94355657 - MIR3 SINE MIR -41 167 94 1153 238 8 4 chr12 49930811 49931067 -94351422 - MIR SINE MIR -5 257 1 619 210 48 24 chr12 49932007 49932174 -94350315 + Charlie8 DNA MER1_type 107 277 -2140 483 368 13 0 chr12 49933342 49933494 -94348995 + MER91A DNA MER1_type 19 172 -24 2554 103 22 6 chr12 49933569 49933927 -94348562 - THE1B LTR MaLR 0 364 1 298 239 14 0 chr12 49934298 49934369 -94348120 + L2 LINE L2 3201 3272 0 201 262 197 25 chr12 49935472 49935594 -94346895 + L3b LINE CR1 1317 1459 -124 981 218 11 0 chr12 49935887 49936066 -94346423 + MER5A DNA MER1_type 5 185 -4 371 267 52 9 chr12 49937928 49938044 -94344445 - MIR SINE MIR -68 140 20 403 231 87 0 chr12 49938204 49938308 -94344181 + MIR SINE MIR 33 145 -117 1137 267 79 41 chr12 49938502 49939033 -94343456 + L2 LINE L2 2202 2752 -562 545 289 55 36 chr12 49939050 49939303 -94343186 + MIR SINE MIR 5 262 0 1184 294 70 11 chr12 49939319 49939828 -94342661 + L2 LINE L2 2775 3308 -5 252 295 162 0 chr12 49941783 49941888 -94340601 + MIR3 SINE MIR 37 158 -50 458 282 154 0 chr12 49944169 49944325 -94338164 + MIR SINE MIR 2 181 -81 305 253 224 24 chr12 49944588 49944758 -94337731 - MIR SINE MIR -2 260 57 1767 244 102 2 chr12 49944862 49945312 -94337177 + MLT1J LTR MaLR 3 497 -14 24 32 0 0 chr12 49946075 49946106 -94336383 + AT_rich Low_complexity Low_complexity 1 31 0 558 253 58 40 chr12 49946301 49946415 -94336074 + MER5B DNA MER1_type 2 122 -56 546 29 0 0 chr12 49946415 49946483 -94336006 + (CA)n Simple_repeat Simple_repeat 2 69 0 558 253 58 40 chr12 49946483 49946542 -94335947 + MER5B DNA MER1_type 122 178 0 353 264 66 106 chr12 49947346 49947573 -94334916 - L1M2 LINE L1 -5577 1272 1055 1253 153 38 46 chr12 49948371 49948633 -94333856 - AluJo SINE Alu -52 260 1 2384 71 0 29 chr12 49948674 49948982 -94333507 + AluSx SINE Alu 1 299 -13 199 303 187 27 chr12 49949653 49949824 -94332665 + L2 LINE L2 2950 3092 -221 1108 183 28 19 chr12 49949824 49950037 -94332452 + MER20 DNA MER1_type 5 219 0 199 303 187 27 chr12 49950037 49950159 -94332330 + L2 LINE L2 3092 3290 -23 23 0 0 0 chr12 49950334 49950357 -94332132 + AT_rich Low_complexity Low_complexity 1 23 0 2256 81 0 32 chr12 49950780 49951088 -94331401 - AluSc SINE Alu -11 298 1 745 213 257 24 chr12 49952171 49952420 -94330069 - L1MD2 LINE L1 -73 6286 5980 439 244 43 0 chr12 49953116 49953231 -94329258 - L1ME3 LINE L1 -2 6160 6041 966 77 0 0 chr12 49953233 49953363 -94329126 + AluSg/x SINE Alu 176 305 -7 1238 227 151 2 chr12 49953363 49953786 -94328703 - L1ME3 LINE L1 -118 6044 5559 235 191 0 0 chr12 49954096 49954138 -94328351 - L2 LINE L2 0 3313 3272 21 0 0 0 chr12 49954415 49954436 -94328053 + AT_rich Low_complexity Low_complexity 1 21 0 1773 174 7 0 chr12 49954547 49954841 -94327648 + AluJb SINE Alu 8 303 -9 539 221 63 0 chr12 49955060 49955187 -94327302 + MIR SINE MIR 63 197 -65 681 225 203 0 chr12 49955893 49956080 -94326409 + MIR SINE MIR 2 226 -36 2327 126 69 32 chr12 49956407 49956843 -94325646 - Tigger2 DNA MER2_type 0 2718 2267 448 149 0 0 chr12 49956829 49956896 -94325593 - Tigger2 DNA MER2_type -2651 67 1 * 306 282 80 28 chr12 49957979 49958192 -94324297 - L1ME3A LINE L1 -214 5956 5733 181 212 45 0 chr12 49958192 49958258 -94324231 + CT-rich Low_complexity Low_complexity 4 72 0 455 258 70 78 chr12 49958291 49958977 -94323512 - L1ME3A LINE L1 -456 5706 5006 739 275 48 20 chr12 49958996 49959352 -94323137 - L1ME3A LINE L1 -1220 4926 4561 278 361 78 0 chr12 49959517 49959761 -94322728 - L1ME3A LINE L1 -1854 4292 4030 12655 126 107 21 chr12 49959761 49960171 -94322318 + Tigger1 DNA MER2_type 2 375 -2043 2094 113 0 3 chr12 49960171 49960478 -94322011 + AluSx SINE Alu 1 306 0 12655 126 107 21 chr12 49960478 49961346 -94321143 + Tigger1 DNA MER2_type 375 1166 -1252 2193 50 4 0 chr12 49961346 49961607 -94320882 + AluY SINE Alu 40 301 -10 12655 126 107 21 chr12 49961607 49962542 -94319947 + Tigger1 DNA MER2_type 1166 2409 -9 23 68 0 0 chr12 49962664 49962708 -94319781 + AT_rich Low_complexity Low_complexity 1 44 0 292 287 175 0 chr12 49963025 49963168 -94319321 + MIR SINE MIR 51 218 -44 2266 104 3 3 chr12 49963284 49963592 -94318897 - AluSx SINE Alu -4 308 1 1763 172 7 0 chr12 49963719 49964004 -94318485 + AluSx SINE Alu 7 293 -19 352 205 13 51 chr12 49964732 49964810 -94317679 + L2 LINE L2 3237 3311 -2 21 0 0 0 chr12 49964834 49964855 -94317634 + AT_rich Low_complexity Low_complexity 1 21 0 1533 137 8 30 chr12 49964855 49965118 -94317371 - L1PA16 LINE L1 -10 6156 5900 24 0 0 0 chr12 49965654 49965678 -94316811 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr12 49966388 49966418 -94316071 + AT_rich Low_complexity Low_complexity 1 30 0 390 42 0 0 chr12 49966774 49966822 -94315667 + (TG)n Simple_repeat Simple_repeat 2 49 0 700 194 113 22 chr12 49967255 49967477 -94315012 - Charlie4 DNA MER1_type -1 1960 1719 794 241 121 38 chr12 49967857 49967957 -94314532 - Charlie4 DNA MER1_type -1674 287 197 2255 111 0 0 chr12 49967957 49968255 -94314234 - AluSx SINE Alu -14 298 1 794 241 121 38 chr12 49968255 49968419 -94314070 - Charlie4 DNA MER1_type -1764 197 1 245 277 46 0 chr12 49969932 49969997 -94312492 - L2 LINE L2 0 3313 3246 400 194 222 40 chr12 49970660 49970908 -94311581 - L1MC5 LINE L1 -30 7931 7639 421 243 54 49 chr12 49971974 49972159 -94310330 - LTR45B LTR ERV1 0 489 304 204 111 0 0 chr12 49972365 49972401 -94310088 + (T)n Simple_repeat Simple_repeat 1 36 0 330 273 153 3 chr12 49972576 49972858 -94309631 - L1M4 LINE L1 -2847 3299 2976 2064 144 52 8 chr12 49972864 49973245 -94309244 - L1MB3 LINE L1 0 6183 5786 313 288 209 7 chr12 49973284 49973423 -94309066 + MIR SINE MIR 65 231 -31 21 57 0 0 chr12 49973692 49973727 -94308762 + AT_rich Low_complexity Low_complexity 1 35 0 31821 68 7 7 chr12 49973943 49979118 -94303371 - L1PA6 LINE L1 -1 6153 979 680 115 0 10 chr12 49979102 49979206 -94303283 - L1PA6 LINE L1 -6042 104 2 * 189 0 0 0 chr12 49979246 49979267 -94303222 + (T)n Simple_repeat Simple_repeat 1 21 0 258 297 95 20 chr12 49979518 49979666 -94302823 - L1ME3A LINE L1 -23 6147 5989 2451 89 0 3 chr12 49979878 49980191 -94302298 - AluSq SINE Alu -1 312 1 244 292 154 23 chr12 49980742 49980872 -94301617 + MIR SINE MIR 3 149 -113 207 280 0 0 chr12 49981310 49981360 -94301129 + CT-rich Low_complexity Low_complexity 4 53 0 22 56 0 0 chr12 49982180 49982216 -94300273 + AT_rich Low_complexity Low_complexity 1 36 0 181 326 124 10 chr12 49982507 49982700 -94299789 + L2 LINE L2 2763 2977 -337 21 0 0 0 chr12 49984160 49984181 -94298308 + AT_rich Low_complexity Low_complexity 1 21 0 2012 87 8 4 chr12 49985139 49985404 -94297085 - AluSp SINE Alu -12 301 36 690 175 37 38 chr12 49985623 49985819 -94296670 + MER6 DNA MER2_type -65 865 0 189 268 0 0 chr12 49986431 49986472 -94296017 - MIR SINE MIR 0 262 222 227 200 29 14 chr12 49986472 49986542 -94295947 + (TTAAA)n Simple_repeat Simple_repeat 1 71 0 793 186 60 12 chr12 49986567 49986734 -94295755 - MIR SINE MIR -75 187 13 295 360 96 13 chr12 49986810 49987049 -94295440 - L2 LINE L2 -176 3096 2838 34 34 0 17 chr12 49987400 49987424 -94295065 + AT_rich Low_complexity Low_complexity 1 24 -34 1706 161 47 20 chr12 49987424 49987722 -94294767 + AluJb SINE Alu 1 306 -6 34 34 0 17 chr12 49987722 49987756 -94294733 + AT_rich Low_complexity Low_complexity 24 58 0 845 280 152 55 chr12 49987835 49987938 -94294551 + L2 LINE L2 2816 2908 -405 2151 90 0 75 chr12 49987938 49988260 -94294229 + AluSq SINE Alu 4 301 -12 845 280 152 55 chr12 49988260 49988610 -94293879 + L2 LINE L2 2908 3313 0 243 270 27 27 chr12 49988715 49988789 -94293700 + MIR SINE MIR 189 262 0 2427 46 0 3 chr12 49988937 49989244 -94293245 - AluY SINE Alu 0 306 1 22 35 0 0 chr12 49989271 49989300 -94293189 + AT_rich Low_complexity Low_complexity 1 29 0 527 206 12 12 chr12 49989337 49989497 -94292992 - MER113 DNA MER1_type? -350 171 12 239 324 46 37 chr12 49990572 49990680 -94291809 + L2 LINE L2 3197 3305 -8 1699 155 72 40 chr12 49991110 49991459 -94291030 + MLT1A1 LTR MaLR 1 360 -5 190 270 79 11 chr12 49991496 49991585 -94290904 - MIR SINE MIR -99 163 69 446 268 86 9 chr12 49991778 49991920 -94290569 + MIR SINE MIR 12 162 -46 482 288 102 22 chr12 49992059 49992285 -94290204 + MIR SINE MIR 2 245 -17 441 246 35 18 chr12 49992744 49992858 -94289631 - L2 LINE L2 -1 3312 3197 535 345 144 10 chr12 49992957 49993360 -94289129 - L2 LINE L2 -361 2953 2497 202 280 110 70 chr12 49993379 49993479 -94289010 + MER91C DNA MER1_type 37 140 0 556 201 43 0 chr12 49993911 49994050 -94288439 - MER69 DNA AcHobo -377 2149 2005 903 279 102 12 chr12 49994062 49994385 -94288104 - MER69 DNA AcHobo -572 654 303 746 175 30 90 chr12 49994433 49994633 -94287856 - MER69 DNA AcHobo -1033 193 6 279 349 69 32 chr12 49995850 49996197 -94286292 - L2 LINE L2 -86 3186 2827 466 327 16 28 chr12 49996225 49996401 -94286088 - MIR SINE MIR -27 181 1 1925 128 11 4 chr12 49996432 49996713 -94285776 - AluSx SINE Alu -12 300 18 399 318 142 42 chr12 49996776 49997087 -94285402 - L2 LINE L2 0 3272 2931 183 327 168 0 chr12 49997240 49997341 -94285148 + L2 LINE L2 3149 3266 -6 1791 159 78 23 chr12 49997931 49998277 -94284212 + MLT1A1 LTR MaLR 1 365 0 21 71 0 0 chr12 49999666 49999708 -94282781 + AT_rich Low_complexity Low_complexity 1 42 0 2389 107 0 0 chr12 49999906 50000214 -94282275 - AluSx SINE Alu -4 308 1 839 218 25 34 chr12 50000477 50000880 -94281609 + MLT1A1 LTR MaLR 1 354 -11 216 318 79 0 chr12 50000953 50001016 -94281473 + L2 LINE L2 3204 3271 -1 280 267 47 0 chr12 50001269 50001355 -94281134 - MIR SINE MIR 0 262 173 1993 137 3 3 chr12 50001624 50001917 -94280572 + AluSx SINE Alu 1 293 -19 180 245 0 0 chr12 50002067 50002120 -94280369 - L2 LINE L2 -1 3271 3219 1980 146 17 0 chr12 50003124 50003418 -94279071 + AluSx SINE Alu 1 299 -13 1099 143 0 6 chr12 50003418 50003642 -94278847 + AluSg/x SINE Alu 132 354 0 36 62 0 0 chr12 50006082 50006146 -94276343 + AT_rich Low_complexity Low_complexity 1 64 0 2685 121 5 3 chr12 50006560 50006949 -94275540 + MLT1B LTR MaLR 1 390 0 837 117 82 0 chr12 50007046 50007217 -94275272 - L1MCa LINE L1 -5089 1337 1153 1942 230 37 89 chr12 50007282 50008221 -94274268 - L1MDa LINE L1 -2003 4537 3648 * 4741 183 91 33 chr12 50008217 50009474 -94273015 - L1MDa LINE L1 -3363 3177 1777 2186 99 0 18 chr12 50009474 50009758 -94272731 - AluSx SINE Alu -24 288 10 4741 183 91 33 chr12 50009758 50010394 -94272095 - L1MDa LINE L1 -4763 1777 1179 204 53 35 105 chr12 50010419 50010476 -94272013 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 13499 187 49 17 chr12 50010501 50015244 -94267245 - L1PB1 LINE L1 -13 6854 1691 333 0 0 0 chr12 50015244 50015281 -94267208 + (TG)n Simple_repeat Simple_repeat 2 38 0 13499 187 49 17 chr12 50015281 50017025 -94265464 - L1PB1 LINE L1 -5176 1691 6 2378 109 26 13 chr12 50017047 50017431 -94265058 - L1PA13 LINE L1 0 6163 5775 3067 240 106 24 chr12 50017432 50018201 -94264288 - L1MDa LINE L1 -5351 1189 328 2183 116 7 7 chr12 50018201 50018511 -94263978 + AluSq SINE Alu 1 310 -3 3067 240 106 24 chr12 50018511 50018677 -94263812 - L1MDa LINE L1 -6212 328 177 450 311 2 5 chr12 50018684 50019308 -94263181 + (TA)n Simple_repeat Simple_repeat 1 621 0 310 340 0 0 chr12 50019320 50019414 -94263075 + L1MC4 LINE L1 6614 6707 -1335 262 261 14 0 chr12 50019414 50019483 -94263006 + (TA)n Simple_repeat Simple_repeat 2 71 0 225 326 0 0 chr12 50019484 50019573 -94262916 - L1MC4 LINE L1 -1340 6702 6614 504 228 0 24 chr12 50019574 50019822 -94262667 + (TA)n Simple_repeat Simple_repeat 1 241 0 338 275 0 22 chr12 50019860 50019951 -94262538 + L1MC4 LINE L1 6615 6703 -1339 305 333 0 0 chr12 50019921 50020011 -94262478 - L1MC4 LINE L1 -1339 6703 6614 * 300 311 0 0 chr12 50020016 50020106 -94262383 + L1MC4 LINE L1 6613 6702 -1340 255 274 24 0 chr12 50020117 50020201 -94262288 + L1MC4 LINE L1 6618 6703 -1339 510 276 0 0 chr12 50020204 50020517 -94261972 + (TA)n Simple_repeat Simple_repeat 1 313 0 230 77 0 0 chr12 50020517 50020556 -94261933 + LTR66 LTR ERVL 398 436 -174 208 156 0 0 chr12 50020557 50020589 -94261900 + (TA)n Simple_repeat Simple_repeat 2 33 0 351 0 0 0 chr12 50020589 50020628 -94261861 + (TG)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chr12 50020628 50020655 -94261834 + (TA)n Simple_repeat Simple_repeat 1 27 0 292 81 81 65 chr12 50020655 50020717 -94261772 - L1MDa LINE L1 -6436 104 42 483 175 29 10 chr12 50020789 50020892 -94261597 + MLT1A1 LTR MaLR 1 105 -260 1118 119 0 6 chr12 50020892 50021068 -94261421 + MSTA LTR MaLR 1 175 -253 572 257 143 50 chr12 50071076 50071376 -94211113 - MLT1J1 LTR MaLR -94 352 25 248 290 40 60 chr12 50071794 50071894 -94210595 - MIR SINE MIR -42 220 123 265 165 0 63 chr12 50071910 50071989 -94210500 - MER3 DNA MER1_type -4 205 132 789 171 6 0 chr12 50072008 50072166 -94210323 - MER3 DNA MER1_type -42 167 9 433 283 188 0 chr12 50072621 50072759 -94209730 - MIR SINE MIR -8 254 91 262 339 97 10 chr12 50072880 50073072 -94209417 + L2 LINE L2 2782 2996 -276 184 263 20 61 chr12 50073212 50073311 -94209178 - MER5B DNA MER1_type -71 107 13 435 271 93 0 chr12 50073419 50073537 -94208952 - L2 LINE L2 0 3313 3185 1114 141 40 60 chr12 50073537 50073774 -94208715 + MLT1D LTR MaLR 1 241 -264 2293 87 0 3 chr12 50073774 50074072 -94208417 + AluSx SINE Alu 1 297 -15 1114 141 40 60 chr12 50074072 50074268 -94208221 + MLT1D LTR MaLR 241 505 0 1698 151 7 28 chr12 50074521 50074812 -94207677 + AluJo SINE Alu 9 293 -19 25 51 0 0 chr12 50075010 50075049 -94207440 + AT_rich Low_complexity Low_complexity 1 39 0 242 324 0 49 chr12 50075099 50075201 -94207288 - MER5A DNA MER1_type -43 146 50 42 71 0 0 chr12 50075247 50075331 -94207158 + GC_rich Low_complexity Low_complexity 1 84 0 27 49 0 0 chr12 50075580 50075621 -94206868 + GC_rich Low_complexity Low_complexity 1 41 0 267 31 0 0 chr12 50075934 50075966 -94206523 + (CA)n Simple_repeat Simple_repeat 2 33 0 663 263 17 28 chr12 50076409 50076588 -94205901 - MIR SINE MIR -8 254 78 248 318 58 48 chr12 50077119 50077308 -94205181 + MIR3 SINE MIR 11 201 -7 247 304 51 0 chr12 50079040 50079119 -94203370 - MIR3 SINE MIR -14 194 112 816 216 158 23 chr12 50080705 50081120 -94201369 - Charlie1 DNA MER1_type -10 2751 36 363 335 80 0 chr12 50081381 50081557 -94200932 + MIR SINE MIR 53 242 -20 1520 102 130 11 chr12 50081822 50082107 -94200382 + MER1B DNA MER1_type 17 335 -4 2366 106 0 0 chr12 50082679 50082991 -94199498 - AluSx SINE Alu 0 312 1 246 273 209 36 chr12 50084364 50084503 -94197986 - MIR3 SINE MIR -12 196 34 238 159 29 0 chr12 50084948 50085017 -94197472 + (CA)n Simple_repeat Simple_repeat 2 72 0 372 292 18 18 chr12 50088190 50088303 -94194186 - MIR3 SINE MIR -87 121 9 183 162 0 0 chr12 50089095 50089132 -94193357 + (TG)n Simple_repeat Simple_repeat 1 37 0 358 306 20 0 chr12 50090009 50090107 -94192382 - MIR3 SINE MIR -43 165 66 468 244 225 19 chr12 50090849 50091062 -94191427 + MIR SINE MIR 6 262 0 317 321 47 9 chr12 50091182 50091288 -94191201 - MIR SINE MIR -48 214 105 239 114 23 0 chr12 50092591 50092635 -94189854 + GA-rich Low_complexity Low_complexity 1 45 0 244 319 165 5 chr12 50094732 50094920 -94187569 + L1ME4a LINE L1 5589 5806 -315 456 233 136 13 chr12 50094959 50095187 -94187302 + L1ME4a LINE L1 5859 6114 -7 295 317 30 10 chr12 50095232 50095333 -94187156 + MIR SINE MIR 41 143 -65 1908 172 29 96 chr12 50096065 50096483 -94186006 + MLT1B LTR MaLR 1 390 0 282 125 0 0 chr12 50096672 50096720 -94185769 + (TG)n Simple_repeat Simple_repeat 1 48 0 2315 103 0 0 chr12 50098547 50098848 -94183641 - AluSx SINE Alu -11 301 1 396 294 184 6 chr12 50098883 50099046 -94183443 - MER91A DNA MER1_type -3 193 2 369 0 0 0 chr12 50099980 50100021 -94182468 + (TG)n Simple_repeat Simple_repeat 1 41 0 209 300 75 0 chr12 50101218 50101298 -94181191 - MIR SINE MIR -63 199 114 304 277 77 19 chr12 50102249 50102395 -94180094 - MIR3 SINE MIR -47 215 58 207 321 104 0 chr12 50102437 50102543 -94179946 + MIR3 SINE MIR 89 205 -3 510 323 95 36 chr12 50103129 50103466 -94179023 + L2 LINE L2 2916 3272 0 181 282 13 51 chr12 50103466 50103544 -94178945 + L2 LINE L2 3198 3272 0 223 343 37 46 chr12 50103967 50104075 -94178414 + MIR SINE MIR 156 262 0 194 377 26 0 chr12 50105637 50105714 -94176775 + L2 LINE L2 2981 3059 -213 186 380 76 0 chr12 50106486 50106578 -94175911 - MIR SINE MIR -85 123 25 1250 176 92 0 chr12 50107187 50107362 -94175127 - AluJo SINE Alu -4 308 102 183 114 0 0 chr12 50107362 50107397 -94175092 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 1250 176 92 0 chr12 50107397 50107471 -94175018 - AluJo SINE Alu -210 102 36 298 294 108 0 chr12 50107823 50107925 -94174564 - MIR3 SINE MIR -35 173 61 289 365 73 7 chr12 50108382 50108519 -94173970 + MIR SINE MIR 21 166 -96 2043 111 3 40 chr12 50108519 50108843 -94173646 + AluSx SINE Alu 1 312 0 2175 132 0 0 chr12 50109054 50109364 -94173125 - AluSx SINE Alu -2 310 1 989 265 8 8 chr12 50109447 50109681 -94172808 - MIR SINE MIR -25 237 4 29 0 0 0 chr12 50111565 50111594 -94170895 + AT_rich Low_complexity Low_complexity 1 29 0 195 290 0 48 chr12 50111594 50111656 -94170833 - MIR SINE MIR 0 262 204 2152 122 0 0 chr12 50111691 50111995 -94170494 - AluSx SINE Alu -8 304 1 606 225 22 73 chr12 50111999 50112059 -94170430 - MIR SINE MIR -48 214 153 2172 125 3 0 chr12 50112059 50112370 -94170119 - AluSx SINE Alu 0 312 1 606 225 22 73 chr12 50112370 50112487 -94170002 - MIR SINE MIR -109 153 46 462 61 0 0 chr12 50112929 50112995 -94169494 + (TC)n Simple_repeat Simple_repeat 1 66 0 436 273 196 14 chr12 50113562 50113782 -94168707 + L1ME4a LINE L1 5851 6110 -11 626 323 73 1 chr12 50114537 50114784 -94167705 - MIR SINE MIR 0 262 1 664 263 44 77 chr12 50116942 50117239 -94165250 + L2 LINE L2 3024 3310 -3 303 345 35 7 chr12 50117475 50117620 -94164869 + MIR3 SINE MIR 10 158 -50 475 212 18 166 chr12 50117622 50117745 -94164744 - MER5A DNA MER1_type 0 189 50 1683 138 12 0 chr12 50117745 50117999 -94164490 - AluSx SINE Alu -19 293 37 475 212 18 166 chr12 50117999 50118018 -94164471 - MER5A DNA MER1_type -139 50 30 2240 81 20 3 chr12 50118018 50118316 -94164173 - AluSx SINE Alu -9 303 1 475 212 18 166 chr12 50118316 50118389 -94164100 - MER5A DNA MER1_type -159 30 5 284 264 24 57 chr12 50119722 50119858 -94162631 + MIR3 SINE MIR 6 141 -86 213 216 0 59 chr12 50120191 50120242 -94162247 - MIR SINE MIR -60 148 101 269 190 27 76 chr12 50121686 50121870 -94160619 + (CCGGG)n Simple_repeat Simple_repeat 1 175 0 21 36 0 0 chr12 50121944 50121972 -94160517 + GC_rich Low_complexity Low_complexity 1 28 0 241 288 0 38 chr12 50122791 50122871 -94159618 + C-rich Low_complexity Low_complexity 4 80 0 303 93 0 0 chr12 50123835 50123878 -94158611 + (GGAA)n Simple_repeat Simple_repeat 1 43 0 205 290 48 16 chr12 50123899 50123961 -94158528 + L2 LINE L2 3024 3087 -185 288 320 179 0 chr12 50125103 50125259 -94157230 - MIR SINE MIR -16 246 63 304 65 22 0 chr12 50125259 50125305 -94157184 - L2 LINE L2 0 3313 3267 766 152 0 34 chr12 50125648 50125826 -94156663 + GA-rich Low_complexity Low_complexity 1 172 0 373 289 278 5 chr12 50125828 50126015 -94156474 - MIR SINE MIR -1 261 24 455 291 126 6 chr12 50126724 50126899 -94155590 + MIR SINE MIR 12 207 -55 189 0 0 0 chr12 50127013 50127034 -94155455 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 472 235 15 23 chr12 50127129 50127261 -94155228 + MIR3 SINE MIR 78 208 0 203 88 29 0 chr12 50127862 50127896 -94154593 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2059 119 37 0 chr12 50128057 50128352 -94154137 + AluSx SINE Alu 1 306 -6 300 288 108 65 chr12 50128353 50128492 -94153997 + MER5A DNA MER1_type 45 189 0 441 294 27 7 chr12 50128493 50128639 -94153850 - MIR3 SINE MIR -49 159 11 304 281 22 0 chr12 50129187 50129276 -94153213 - L2 LINE L2 -5 3308 3218 2257 97 0 7 chr12 50129671 50129970 -94152519 - AluSq SINE Alu -16 297 1 2118 136 0 0 chr12 50130005 50130306 -94152183 + AluSx SINE Alu 7 307 -5 561 284 77 18 chr12 50130345 50130567 -94151922 + MIR SINE MIR 4 238 -24 1804 132 28 19 chr12 50131990 50132309 -94150180 - MER33 DNA MER1_type -1 323 2 298 304 151 42 chr12 50132673 50133058 -94149431 - L2 LINE L2 -902 2412 1986 2154 103 30 0 chr12 50133095 50133395 -94149094 - AluSx SINE Alu -3 309 1 363 310 31 70 chr12 50133636 50133923 -94148566 + L1ME4a LINE L1 5552 5827 -294 282 219 0 0 chr12 50135241 50135305 -94147184 + (TG)n Simple_repeat Simple_repeat 2 65 0 454 326 124 13 chr12 50136238 50136471 -94146018 - MIR SINE MIR 0 262 4 333 325 58 0 chr12 50136536 50136656 -94145833 - MIR SINE MIR -123 139 13 1753 174 0 19 chr12 50137365 50137676 -94144813 - AluJb SINE Alu -7 305 1 461 296 210 4 chr12 50138236 50138493 -94143996 + L3 LINE CR1 537 846 -731 1429 148 65 47 chr12 50138502 50138779 -94143710 + AluJo SINE Alu 1 282 -30 402 21 0 0 chr12 50138800 50138847 -94143642 + (CA)n Simple_repeat Simple_repeat 1 47 0 1751 176 43 14 chr12 50139009 50139424 -94143065 + Charlie1b DNA MER1_type 97 523 0 807 231 67 5 chr12 50140124 50140332 -94142157 - MIR SINE MIR -1 261 41 306 293 61 10 chr12 50140395 50140494 -94141995 + L2 LINE L2 3122 3225 -47 1074 252 24 45 chr12 50141114 50141447 -94141042 + LTR16A LTR ERVL 125 450 0 2190 105 0 0 chr12 50142172 50142468 -94140021 + AluSx SINE Alu 17 312 0 491 252 161 0 chr12 50142494 50142649 -94139840 + MER3 DNA MER1_type 30 209 0 291 192 0 0 chr12 50142606 50142658 -94139831 - MER3 DNA MER1_type -119 90 39 * 371 364 0 26 chr12 50143584 50143735 -94138754 + MIR SINE MIR 116 262 0 2125 91 14 47 chr12 50144599 50144896 -94137593 - AluSp SINE Alu -26 287 1 199 272 161 0 chr12 50144897 50144978 -94137511 + MIR SINE MIR 59 152 -56 194 315 11 22 chr12 50147268 50147357 -94135132 + L2 LINE L2 2719 2806 -508 619 299 80 36 chr12 50147435 50147800 -94134689 + L2 LINE L2 2933 3313 0 1042 191 0 0 chr12 50149702 50149864 -94132625 - AluJo/FRAM SINE Alu -17 295 134 1778 185 0 32 chr12 50149864 50150034 -94132455 - AluJo SINE Alu -9 303 146 2331 65 0 11 chr12 50150034 50150313 -94132176 - AluY SINE Alu -22 289 14 1778 185 0 32 chr12 50150313 50150455 -94132034 - AluJo SINE Alu -166 146 1 2504 90 3 0 chr12 50150680 50150990 -94131499 - AluSx SINE Alu -1 311 1 209 240 20 0 chr12 50151740 50151790 -94130699 - L3 LINE CR1 -401 1176 1126 552 270 120 63 chr12 50151832 50151963 -94130526 - L1ME4a LINE L1 0 6121 5999 2130 112 10 13 chr12 50151963 50152275 -94130214 - AluSx SINE Alu 0 312 2 552 270 120 63 chr12 50152275 50152569 -94129920 - L1ME4a LINE L1 -122 5999 5672 2513 63 10 3 chr12 50155288 50155591 -94126898 + AluY SINE Alu 1 305 -6 2203 116 3 10 chr12 50155595 50155897 -94126592 + AluSq SINE Alu 1 300 -13 1253 109 12 0 chr12 50155897 50156062 -94126427 + AluSp SINE Alu 134 300 -13 1960 142 10 17 chr12 50156246 50156548 -94125941 - AluJo SINE Alu -12 300 1 199 278 17 78 chr12 50156785 50156900 -94125589 + MIR3 SINE MIR 51 158 -50 332 225 50 0 chr12 50156948 50157028 -94125461 - MER5A DNA MER1_type -51 138 55 2289 106 0 16 chr12 50157035 50157172 -94125317 + AluSx SINE Alu 1 139 -173 2189 113 0 0 chr12 50157172 50157496 -94124993 + AluSg SINE Alu 1 324 0 2289 106 0 16 chr12 50157496 50157669 -94124820 + AluSx SINE Alu 139 307 -5 568 298 130 19 chr12 50158232 50158772 -94123717 + L1ME4a LINE L1 5384 5983 -138 210 286 43 23 chr12 50158986 50159093 -94123396 + MIR SINE MIR 10 116 -92 355 281 75 50 chr12 50160017 50160177 -94122312 + MIR3 SINE MIR 16 179 -29 201 39 0 0 chr12 50160196 50160222 -94122267 + (TG)n Simple_repeat Simple_repeat 2 27 0 235 258 247 0 chr12 50160233 50160326 -94122163 + MIR SINE MIR 141 256 -6 204 346 57 64 chr12 50161477 50161775 -94120714 + L2 LINE L2 2814 3109 -163 186 296 0 0 chr12 50161880 50161934 -94120555 + L2 LINE L2 3174 3227 -86 778 81 16 16 chr12 50161952 50162076 -94120413 + (TTCC)n Simple_repeat Simple_repeat 2 125 0 2192 118 6 10 chr12 50162077 50162390 -94120099 - AluSx SINE Alu 0 312 1 984 259 4 17 chr12 50163032 50163271 -94119218 - MIR SINE MIR -26 236 1 323 185 46 0 chr12 50164143 50164208 -94118281 - L2 LINE L2 0 3272 3205 277 302 109 40 chr12 50164500 50164702 -94117787 + MIR SINE MIR 31 246 -16 323 236 34 34 chr12 50165330 50165419 -94117070 + MIR SINE MIR 36 124 -84 1868 165 0 13 chr12 50167524 50167833 -94114656 - AluJo SINE Alu -3 309 5 2473 63 7 10 chr12 50167839 50168139 -94114350 - AluY SINE Alu -12 299 1 2274 72 43 0 chr12 50168240 50168519 -94113970 - AluY SINE Alu -20 291 1 2033 138 0 21 chr12 50168832 50169151 -94113338 + AluSx SINE Alu 1 313 0 2308 132 0 0 chr12 50169198 50169508 -94112981 + AluSg SINE Alu 1 310 0 198 0 0 0 chr12 50169534 50169556 -94112933 + (TG)n Simple_repeat Simple_repeat 1 22 0 210 366 12 0 chr12 50170112 50170194 -94112295 - MIR3 SINE MIR -15 193 111 2644 56 0 0 chr12 50171379 50171684 -94110805 + AluY SINE Alu 1 305 -6 1841 176 0 19 chr12 50171733 50172045 -94110444 + AluJb SINE Alu 1 306 -6 701 210 0 0 chr12 50172936 50173079 -94109410 + L1MA9 LINE L1 6170 6312 0 421 287 98 67 chr12 50173211 50173403 -94109086 + L1MC4a LINE L1 5563 5771 -2037 2229 129 3 3 chr12 50173403 50173889 -94108600 - AluSx SINE Alu 0 312 1 421 287 98 67 chr12 50173889 50174024 -94108465 + L1MC4a LINE L1 5771 5900 -1908 195 42 0 0 chr12 50174033 50174057 -94108432 + (CA)n Simple_repeat Simple_repeat 1 24 0 415 221 184 0 chr12 50174324 50174460 -94108029 + MIR SINE MIR 88 248 -14 475 236 103 46 chr12 50174991 50175165 -94107324 - MIR SINE MIR -51 211 23 1763 158 29 45 chr12 50175165 50175476 -94107013 + THE1C LTR MaLR 1 306 -69 2725 23 7 3 chr12 50175476 50175785 -94106704 - AluY SINE Alu -1 310 1 1763 158 29 45 chr12 50175785 50175854 -94106635 + THE1C LTR MaLR 306 375 0 475 236 103 46 chr12 50175854 50175874 -94106615 - MIR SINE MIR -239 23 6 185 296 45 45 chr12 50177493 50177581 -94104908 + L2 LINE L2 3198 3285 -28 2183 200 35 11 chr12 50177766 50178344 -94104145 + MER82 DNA MER2_type 2 651 -2 240 86 0 0 chr12 50178344 50178379 -94104110 + (TG)n Simple_repeat Simple_repeat 2 36 0 817 151 0 0 chr12 50179228 50179354 -94103135 + FLAM_C SINE Alu 1 126 -7 188 229 49 16 chr12 50181438 50181499 -94100990 + MIR SINE MIR 10 72 -190 234 247 14 41 chr12 50182500 50182573 -94099916 - MIR SINE MIR -65 197 127 523 113 0 0 chr12 50182803 50182883 -94099606 - MADE1 DNA Mariner 0 80 1 289 141 50 0 chr12 50182944 50183043 -94099446 + (TA)n Simple_repeat Simple_repeat 2 105 0 1781 158 47 99 chr12 50183137 50183631 -94098858 + L1PA16 LINE L1 5699 6166 0 231 114 0 0 chr12 50185733 50185777 -94096712 + (CA)n Simple_repeat Simple_repeat 2 45 0 495 336 76 9 chr12 50186379 50186590 -94095899 - MIR SINE MIR -10 252 28 308 314 189 6 chr12 50186634 50186809 -94095680 - MIR SINE MIR -27 235 29 187 241 0 74 chr12 50187726 50187780 -94094709 + L3b LINE CR1 1519 1568 -15 968 159 13 0 chr12 50187823 50187974 -94094515 - FRAM SINE Alu -13 163 11 511 340 94 4 chr12 50188815 50189071 -94093418 - L3 LINE CR1 -11 1566 1288 2371 92 0 32 chr12 50189154 50189470 -94093019 + AluSq SINE Alu 1 306 -7 285 243 54 0 chr12 50189544 50189618 -94092871 - MER91B DNA MER1_type -57 133 56 2607 90 3 0 chr12 50190102 50190456 -94092033 - THE1A LTR MaLR 0 355 1 185 219 0 24 chr12 50190800 50190841 -94091648 - MIR3 SINE MIR -52 156 117 1711 186 12 6 chr12 50190843 50191182 -94091307 + L1MA5 LINE L1 5960 6300 0 221 169 34 34 chr12 50191228 50191287 -94091202 + MIR SINE MIR 73 131 -77 199 173 39 39 chr12 50191297 50191349 -94091140 - MIR SINE MIR -139 123 72 198 0 0 0 chr12 50191934 50191956 -94090533 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 268 99 70 0 chr12 50192451 50192522 -94089967 + (TA)n Simple_repeat Simple_repeat 1 76 0 239 345 12 0 chr12 50193375 50193459 -94089030 - L1ME LINE L1 -485 5636 5552 2475 88 0 13 chr12 50193700 50194007 -94088482 + AluSx SINE Alu 1 303 -9 516 288 77 18 chr12 50194050 50194272 -94088217 + MIR SINE MIR 4 238 -24 991 134 5 62 chr12 50194848 50195042 -94087447 - MLT1D LTR MaLR 0 505 323 1398 105 0 59 chr12 50195044 50195330 -94087159 - AluSx SINE Alu -15 297 29 277 149 0 0 chr12 50197594 50197641 -94084848 - FLAM_A SINE Alu -28 105 59 990 145 42 5 chr12 50198477 50198670 -94083819 - AluY SINE Alu -30 281 82 467 270 142 0 chr12 50250659 50250807 -94031682 + MIR SINE MIR 58 226 -36 281 317 75 44 chr12 50250822 50251030 -94031459 + L1ME3A LINE L1 5955 6170 0 185 315 19 0 chr12 50252358 50252412 -94030077 - L3b LINE CR1 -187 1396 1342 201 243 0 54 chr12 50252895 50252969 -94029520 - L2 LINE L2 -2 3270 3201 777 233 35 120 chr12 50253059 50253249 -94029240 - MIR SINE MIR 0 262 102 1757 142 3 31 chr12 50253249 50253538 -94028951 - AluJb SINE Alu -31 281 1 777 233 35 120 chr12 50253538 50253630 -94028859 - MIR SINE MIR -160 102 4 198 327 19 37 chr12 50253738 50253845 -94028644 - L2 LINE L2 -217 3055 2951 214 280 3 18 chr12 50254341 50254409 -94028080 + MIR SINE MIR 96 150 -58 306 0 0 0 chr12 50254636 50254670 -94027819 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 881 166 0 14 chr12 50254672 50254817 -94027672 - FAM SINE Alu -27 158 16 192 314 162 0 chr12 50254993 50255098 -94027391 - L2 LINE L2 0 3272 3151 377 272 150 40 chr12 50255112 50255285 -94027204 - L2 LINE L2 -4 3268 3077 183 347 180 24 chr12 50255499 50255793 -94026696 - L2 LINE L2 -339 2975 2636 534 271 5 85 chr12 50255811 50255999 -94026490 + MIR SINE MIR 77 249 -13 219 69 0 0 chr12 50256000 50256029 -94026460 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 190 373 99 7 chr12 50256037 50256179 -94026310 - L2 LINE L2 -671 2643 2489 21 0 0 0 chr12 50257086 50257107 -94025382 + AT_rich Low_complexity Low_complexity 1 21 0 2430 162 18 11 chr12 50257856 50258314 -94024175 - LTR32 LTR ERVL 0 471 11 214 256 0 0 chr12 50259577 50259620 -94022869 - L2 LINE L2 -6 3307 3265 922 236 72 31 chr12 50260261 50260651 -94021838 - MLT1J LTR MaLR -7 504 99 231 195 0 0 chr12 50260735 50260776 -94021713 - LTR48B LTR ERV1 0 644 604 1758 163 33 84 chr12 50260781 50261325 -94021164 - LTR49-int LTR ERV1 -4521 1425 1 445 156 26 110 chr12 50261333 50261487 -94021002 - LTR49 LTR ERV1 -36 559 419 1717 135 239 9 chr12 50261487 50261834 -94020655 + MSTA LTR MaLR 2 428 0 9005 117 11 64 chr12 50261836 50262396 -94020093 + MSTA-int LTR MaLR 3 591 -989 2037 123 0 0 chr12 50262396 50262673 -94019816 + AluSq SINE Alu 2 278 -35 9005 117 11 64 chr12 50262673 50263459 -94019030 + MSTA-int LTR MaLR 591 1417 -163 1649 170 3 48 chr12 50263459 50263770 -94018719 + AluJb SINE Alu 1 297 -15 9005 117 11 64 chr12 50263770 50263963 -94018526 + MSTA-int LTR MaLR 1417 1452 -128 4311 70 4 12 chr12 50263963 50264405 -94018084 + MER41A LTR ERV1 1 438 -116 2177 83 0 0 chr12 50264405 50264682 -94017807 - AluY SINE Alu 0 311 35 4311 70 4 12 chr12 50264682 50264798 -94017691 + MER41A LTR ERV1 438 554 0 9005 117 11 64 chr12 50264798 50264921 -94017568 + MSTA-int LTR MaLR 1452 1580 0 1583 138 235 0 chr12 50264921 50265261 -94017228 + MSTA LTR MaLR 1 420 -8 764 201 36 27 chr12 50265267 50265505 -94016984 - LTR29 LTR ERV1 -179 608 185 1176 180 0 0 chr12 50265526 50265720 -94016769 + AluJo SINE Alu 1 194 -118 2382 114 8 31 chr12 50265731 50266329 -94016160 - MER4A LTR ERV1 -9 655 1 845 78 14 57 chr12 50266333 50266474 -94016015 - MER4B LTR ERV1 -475 135 1 716 156 0 0 chr12 50266474 50266583 -94015906 + AluJo SINE Alu 191 299 -13 349 203 85 124 chr12 50266585 50266762 -94015727 - MER39 LTR ERV1 -474 170 1 2171 99 0 0 chr12 50267161 50267475 -94015014 + AluSx SINE Alu 1 314 0 3275 170 29 71 chr12 50267764 50268483 -94014006 - LTR8 LTR ERV1 0 691 3 423 357 70 0 chr12 50270168 50270325 -94012164 - MIR3 SINE MIR -7 201 34 1142 174 19 14 chr12 50272968 50273180 -94009309 - MER20 DNA MER1_type 0 219 7 271 200 18 0 chr12 50273682 50273737 -94008752 + L2 LINE L2 3250 3305 -8 200 245 0 19 chr12 50275475 50275528 -94006961 - L2 LINE L2 0 3313 3262 357 275 0 22 chr12 50276756 50276847 -94005642 + L1MC4 LINE L1 6614 6702 -1340 * 389 296 56 88 chr12 50276829 50277323 -94005166 - L1MCa LINE L1 -109 6292 1906 2015 115 13 20 chr12 50295257 50295562 -93986927 - AluSx SINE Alu -9 303 1 436 271 16 8 chr12 50297539 50297661 -93984828 + MIR SINE MIR 97 219 -43 270 227 68 23 chr12 50298016 50298104 -93984385 + MIR SINE MIR 143 234 -28 21 0 0 0 chr12 50302131 50302152 -93980337 + AT_rich Low_complexity Low_complexity 1 21 0 207 261 31 0 chr12 50305391 50305456 -93977033 + GA-rich Low_complexity Low_complexity 2 68 0 182 178 22 22 chr12 50307883 50307928 -93974561 + MER5B DNA MER1_type 121 165 -13 318 50 0 0 chr12 50308557 50308597 -93973892 + (CA)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr12 50312102 50312127 -93970362 + AT_rich Low_complexity Low_complexity 1 25 0 1976 128 25 0 chr12 50313070 50313443 -93969046 + AluSx SINE Alu 5 384 0 224 111 0 67 chr12 50314195 50314240 -93968249 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 219 69 0 0 chr12 50315068 50315097 -93967392 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 292 203 0 0 chr12 50315228 50315287 -93967202 + MER5A DNA MER1_type 13 71 -118 195 246 115 0 chr12 50316329 50316390 -93966099 - L2 LINE L2 0 3272 3205 2433 55 28 7 chr12 50316923 50317214 -93965275 + AluSp SINE Alu 1 297 -16 529 301 33 0 chr12 50317316 50317499 -93964990 + MIR SINE MIR 71 259 -3 1905 143 9 40 chr12 50318286 50318608 -93963881 + AluJo SINE Alu 1 312 0 842 150 0 0 chr12 50319288 50319421 -93963068 - FLAM_C SINE Alu 0 133 1 436 321 8 8 chr12 50319723 50319857 -93962632 + MIR SINE MIR 16 149 -59 747 245 39 15 chr12 50320718 50320922 -93961567 + MER3 DNA MER1_type 1 209 0 482 133 9 115 chr12 50320935 50321002 -93961487 + MER5A DNA MER1_type 9 61 -128 2386 87 0 10 chr12 50321002 50321301 -93961188 + AluSg SINE Alu 1 296 -14 482 133 9 115 chr12 50321301 50321346 -93961143 + MER5A DNA MER1_type 61 109 -80 863 197 17 17 chr12 50321411 50321589 -93960900 + MER5B DNA MER1_type 1 178 0 220 352 0 11 chr12 50322963 50323054 -93959435 - MIR3 SINE MIR -2 206 117 993 165 10 5 chr12 50323060 50323254 -93959235 - MER96B DNA MER1_type? -181 236 42 180 273 55 64 chr12 50323261 50323371 -93959118 - MIR3 SINE MIR -88 120 12 212 296 0 0 chr12 50323915 50323969 -93958520 + CT-rich Low_complexity Low_complexity 1 54 0 26 0 0 0 chr12 50324392 50324418 -93958071 + AT_rich Low_complexity Low_complexity 1 26 0 1864 167 7 10 chr12 50324454 50324753 -93957736 + AluJo SINE Alu 1 298 -14 1203 254 72 84 chr12 50324922 50325600 -93956889 - L1MC4a LINE L1 -1872 5936 5267 2385 97 0 3 chr12 50325662 50325970 -93956519 - AluSq SINE Alu -6 307 1 475 318 108 47 chr12 50325975 50326271 -93956218 - L1MC4a LINE L1 -941 5205 4892 1933 139 0 0 chr12 50326271 50326537 -93955952 + AluSx SINE Alu 1 266 -46 231 125 0 0 chr12 50326856 50326896 -93955593 + (A)n Simple_repeat Simple_repeat 1 40 0 619 178 6 77 chr12 50327688 50327857 -93954632 + L1MC5 LINE L1 7732 7888 -73 2025 125 42 0 chr12 50329403 50329691 -93952798 - AluSx SINE Alu -7 305 6 249 347 113 33 chr12 50330273 50330486 -93952003 + MIR SINE MIR 21 250 -12 461 291 0 33 chr12 50331794 50331945 -93950544 + MIR SINE MIR 46 191 -71 191 344 120 16 chr12 50333221 50333346 -93949143 - MIR SINE MIR -20 242 105 2499 74 0 0 chr12 50333460 50333756 -93948733 + AluSc SINE Alu 1 296 -13 293 213 43 9 chr12 50334367 50334469 -93948020 + MIR SINE MIR 89 145 -63 241 229 66 0 chr12 50334511 50334572 -93947917 + L2 LINE L2 3227 3291 -22 220 293 24 0 chr12 50334620 50334702 -93947787 + MIR SINE MIR 174 257 -5 399 354 6 24 chr12 50335783 50335947 -93946542 + MIR SINE MIR 24 184 -78 313 267 61 53 chr12 50336092 50336223 -93946266 - MIR SINE MIR -106 156 25 260 237 107 61 chr12 50336396 50336527 -93945962 + L3 LINE CR1 1346 1482 -95 298 297 11 11 chr12 50336603 50336694 -93945795 + MIR3 SINE MIR 118 208 0 358 309 81 15 chr12 50337471 50337607 -93944882 - MIR SINE MIR -112 150 6 24 32 0 0 chr12 50338516 50338547 -93943942 + AT_rich Low_complexity Low_complexity 1 31 0 499 243 192 51 chr12 50339145 50339359 -93943130 + MIR SINE MIR 19 262 0 406 287 57 0 chr12 50339827 50339949 -93942540 - MIR SINE MIR -61 147 19 200 292 0 0 chr12 50341333 50341381 -93941108 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 282 154 0 19 chr12 50341805 50341857 -93940632 + L2 LINE L2 3263 3313 0 641 256 42 4 chr12 50343619 50343837 -93938652 + MIR SINE MIR 40 261 -1 1076 124 141 0 chr12 50344128 50344313 -93938176 + MER46A DNA MER2_type 26 236 0 467 294 15 0 chr12 50344413 50344549 -93937940 - L2 LINE L2 -356 2958 2821 244 138 0 77 chr12 50345414 50345479 -93937010 + (CAGAGA)n Simple_repeat Simple_repeat 3 62 0 699 143 76 0 chr12 50346196 50346315 -93936174 - AluJb SINE Alu -183 129 2 220 326 53 11 chr12 50346918 50347013 -93935476 - L3 LINE CR1 -1 1576 1478 231 239 0 0 chr12 50348854 50348921 -93933568 + GA-rich Low_complexity Low_complexity 2 68 0 387 105 0 0 chr12 50349601 50349658 -93932831 + (TA)n Simple_repeat Simple_repeat 2 58 0 300 70 0 0 chr12 50350093 50350136 -93932353 + (TG)n Simple_repeat Simple_repeat 2 44 0 546 259 36 7 chr12 50352871 50353010 -93929479 + MIR3 SINE MIR 28 170 -38 231 338 149 15 chr12 50353927 50354128 -93928361 - L3b LINE CR1 -83 1500 1273 1910 152 13 19 chr12 50358446 50358756 -93923733 + AluJo SINE Alu 1 308 -4 1211 206 116 30 chr12 50359404 50359760 -93922729 - L1MEc LINE L1 -3529 2686 2289 2281 107 0 0 chr12 50359760 50360059 -93922430 + AluSq SINE Alu 1 299 -14 1211 206 116 30 chr12 50360059 50360109 -93922380 - L1MEc LINE L1 -3926 2289 2245 234 191 48 0 chr12 50360112 50360175 -93922314 + (TA)n Simple_repeat Simple_repeat 2 67 0 729 176 123 34 chr12 50360839 50361043 -93921446 + MER33 DNA MER1_type 1 222 -102 212 155 65 12 chr12 50361058 50361226 -93921263 + (TA)n Simple_repeat Simple_repeat 2 178 0 330 188 45 34 chr12 50361235 50361411 -93921078 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 * 396 100 77 41 chr12 50361285 50361455 -93921034 + (TA)n Simple_repeat Simple_repeat 2 177 0 21 0 0 0 chr12 50361455 50361476 -93921013 + AT_rich Low_complexity Low_complexity 1 21 0 369 146 45 62 chr12 50361492 50361745 -93920744 + (TATAA)n Simple_repeat Simple_repeat 1 248 0 204 85 127 0 chr12 50361953 50362071 -93920418 + (TA)n Simple_repeat Simple_repeat 2 134 0 407 87 99 0 chr12 50362090 50362251 -93920238 + (TA)n Simple_repeat Simple_repeat 1 177 0 237 126 82 7 chr12 50362273 50362316 -93920173 + (TA)n Simple_repeat Simple_repeat 1 39 -106 2250 107 0 0 chr12 50362316 50362605 -93919884 - AluSx SINE Alu -23 289 1 237 126 82 7 chr12 50362605 50362696 -93919793 + (TA)n Simple_repeat Simple_repeat 39 145 0 1736 134 62 11 chr12 50362696 50362972 -93919517 - AluSx SINE Alu -22 290 1 471 97 70 70 chr12 50362974 50363010 -93919479 + MER33 DNA MER1_type 211 246 -2339 2412 106 3 0 chr12 50363010 50363321 -93919168 - AluSx SINE Alu 0 312 1 471 97 70 70 chr12 50363321 50363398 -93919091 + MER33 DNA MER1_type 245 324 0 3888 240 112 23 chr12 50363401 50365125 -93917364 - L1MEc LINE L1 -4124 2272 396 478 264 75 6 chr12 50365169 50365343 -93917146 - L1MEc LINE L1 -6174 222 37 301 224 0 0 chr12 50365493 50365542 -93916947 - L3 LINE CR1 -11 1566 1518 656 208 14 35 chr12 50365677 50365821 -93916668 - FRAM SINE Alu -34 142 2 1728 201 0 10 chr12 50366484 50366783 -93915706 - AluJo SINE Alu -16 296 1 189 256 0 0 chr12 50366834 50366873 -93915616 + L2 LINE L2 3186 3224 -89 573 289 72 24 chr12 50367732 50367940 -93914549 + MIR SINE MIR 45 262 0 21 0 0 0 chr12 50368260 50368281 -93914208 + AT_rich Low_complexity Low_complexity 1 21 0 199 194 179 30 chr12 50368569 50368636 -93913853 + MER5B DNA MER1_type 1 77 -101 205 256 0 0 chr12 50368668 50368711 -93913778 - MER5A DNA MER1_type -140 49 7 2243 106 0 0 chr12 50369769 50370052 -93912437 - AluSx SINE Alu -29 283 1 320 218 0 0 chr12 50370340 50370395 -93912094 - Tigger5 DNA MER2_type -2 2321 2267 375 227 0 0 chr12 50370404 50370479 -93912010 - Tigger5 DNA MER2_type -2247 76 2 850 181 0 0 chr12 50370951 50371078 -93911411 - FLAM_C SINE Alu -16 127 1 2393 100 0 0 chr12 50371587 50371887 -93910602 - AluSx SINE Alu -12 300 1 191 225 0 25 chr12 50372723 50372763 -93909726 + MIR SINE MIR 16 54 -154 881 146 8 0 chr12 50372767 50372897 -93909592 + FLAM_C SINE Alu 1 131 -2 236 214 0 114 chr12 50372903 50372946 -93909543 + L2 LINE L2 3252 3286 -27 2026 95 20 46 chr12 50372946 50373250 -93909239 - AluSx SINE Alu -16 296 1 236 214 0 114 chr12 50373250 50373276 -93909213 + L2 LINE L2 3286 3313 0 304 240 10 96 chr12 50373741 50373845 -93908644 - L2 LINE L2 0 3313 3219 2340 112 0 0 chr12 50373946 50374258 -93908231 + AluSx SINE Alu 1 312 0 328 343 39 17 chr12 50374268 50374446 -93908043 - L2 LINE L2 -263 3009 2828 323 256 192 26 chr12 50374699 50374855 -93907634 - MIR SINE MIR -49 213 32 280 321 111 42 chr12 50375125 50375315 -93907174 - L2 LINE L2 -188 3084 2882 767 198 65 128 chr12 50375338 50375691 -93906798 + L2 LINE L2 2974 3304 -9 200 297 31 0 chr12 50375812 50375876 -93906613 - L2 LINE L2 -588 2726 2661 1811 160 40 13 chr12 50375885 50376185 -93906304 + AluJo SINE Alu 1 308 -4 2372 77 0 0 chr12 50376409 50376696 -93905793 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr12 50376697 50376718 -93905771 + AT_rich Low_complexity Low_complexity 1 21 0 1766 180 83 11 chr12 50377133 50377495 -93904994 + Tigger7 DNA MER2_type 3 390 -343 1447 138 4 4 chr12 50377495 50377720 -93904769 + AluSg/x SINE Alu 85 309 -3 291 175 0 0 chr12 50377730 50377787 -93904702 + Tigger7 DNA MER2_type 384 440 -293 972 98 84 107 chr12 50377787 50378002 -93904487 + Tigger7 DNA MER2_type 2282 2491 0 225 294 15 0 chr12 50378032 50378100 -93904389 + GA-rich Low_complexity Low_complexity 2 70 0 1227 149 40 0 chr12 50379079 50379301 -93903188 - MER46A DNA MER2_type 0 236 6 1571 188 3 31 chr12 50380000 50380331 -93902158 + AluSx SINE Alu 1 323 0 736 278 244 14 chr12 50380720 50381134 -93901355 - L2 LINE L2 0 3313 2805 917 48 0 0 chr12 50381335 50381438 -93901051 - AluY SINE Alu -142 169 67 1814 110 0 26 chr12 50381439 50381703 -93900786 - AluSx SINE Alu -51 261 5 2264 97 0 13 chr12 50381712 50382020 -93900469 - AluSc SINE Alu -5 304 1 947 131 42 0 chr12 50382021 50382189 -93900300 - L1PA16 LINE L1 -127 6039 5865 4496 160 76 19 chr12 50382191 50382661 -93899828 - L1 LINE L1 -817 5329 4887 1314 71 0 0 chr12 50382661 50382829 -93899660 - L1PA5 LINE L1 -3 6151 5984 4496 160 76 19 chr12 50382829 50383403 -93899086 - L1 LINE L1 -1259 4887 4226 304 277 96 0 chr12 50383408 50383491 -93898998 - L1MC4 LINE L1 -1339 6703 6613 438 167 11 0 chr12 50383506 50383596 -93898893 - L1 LINE L1 -1859 4287 4197 1376 61 0 0 chr12 50383600 50383763 -93898726 - AluSg/x SINE Alu -16 296 134 1612 178 14 20 chr12 50383950 50384243 -93898246 + AluJb SINE Alu 8 298 -14 2182 108 0 0 chr12 50384293 50384590 -93897899 + AluY SINE Alu 1 297 -14 1002 182 56 0 chr12 50385217 50385415 -93897074 + MER3 DNA MER1_type 1 209 0 22 35 0 0 chr12 50386330 50386359 -93896130 + AT_rich Low_complexity Low_complexity 1 29 0 546 181 0 0 chr12 50386396 50386490 -93895999 + U6 snRNA snRNA 3 96 -11 2003 146 23 0 chr12 50386638 50386939 -93895550 - AluJo SINE Alu -4 308 1 2378 76 0 3 chr12 50386963 50387264 -93895225 - AluY SINE Alu -11 300 1 231 232 281 18 chr12 50387477 50387626 -93894863 + MIR SINE MIR 40 210 -52 1731 140 11 7 chr12 50387990 50388269 -93894220 - AluJb SINE Alu -21 291 12 2177 123 7 0 chr12 50389523 50389823 -93892666 - AluSx SINE Alu -10 302 1 231 36 0 0 chr12 50390791 50390819 -93891670 + (A)n Simple_repeat Simple_repeat 1 28 0 355 240 52 26 chr12 50391040 50391194 -93891295 + L1MC4 LINE L1 6881 7038 -1004 394 318 63 33 chr12 50391264 50391639 -93890850 + L1MC4 LINE L1 7009 7399 -643 1933 131 0 11 chr12 50391831 50392159 -93890330 + AluSg SINE Alu 1 325 0 2098 131 7 10 chr12 50393132 50393430 -93889059 - AluSx SINE Alu -15 297 1 1692 192 0 23 chr12 50395671 50395979 -93886510 - AluJo SINE Alu -11 301 1 295 270 161 0 chr12 50396068 50396205 -93886284 + L1ME4a LINE L1 5949 6107 -14 2159 117 3 3 chr12 50396243 50396543 -93885946 + AluSx SINE Alu 1 300 -12 1798 148 4 7 chr12 50396761 50397039 -93885450 - AluJb SINE Alu -18 294 18 29 28 0 0 chr12 50397067 50397103 -93885386 + AT_rich Low_complexity Low_complexity 1 36 0 738 213 48 117 chr12 50398098 50398356 -93884133 - MER46C DNA MER2_type -6 332 103 2290 109 0 0 chr12 50398356 50398659 -93883830 - AluSx SINE Alu -9 303 1 738 213 48 117 chr12 50398659 50398752 -93883737 - MER46C DNA MER2_type -235 103 5 1329 136 19 14 chr12 50398844 50399057 -93883432 + AluJb SINE Alu 87 300 -12 1817 161 0 23 chr12 50399172 50399471 -93883018 + AluJo SINE Alu 5 296 -16 2269 104 0 0 chr12 50399473 50399761 -93882728 + AluSx SINE Alu 1 288 -24 31 26 0 0 chr12 50399761 50399799 -93882690 + AT_rich Low_complexity Low_complexity 1 38 0 2214 118 3 0 chr12 50400330 50400634 -93881855 + AluSx SINE Alu 1 305 -7 2469 68 7 0 chr12 50401536 50401831 -93880658 - AluSq SINE Alu -16 297 1 740 183 0 8 chr12 50401899 50402025 -93880464 + FLAM_C SINE Alu 2 126 -7 25 0 0 0 chr12 50402056 50402081 -93880408 + AT_rich Low_complexity Low_complexity 1 25 0 447 295 26 47 chr12 50402316 50402509 -93879980 + MER20B DNA MER1_type 4 192 -591 529 255 159 0 chr12 50402541 50402698 -93879791 - MER5A DNA MER1_type -1 188 7 1552 188 0 46 chr12 50403295 50403438 -93879051 + AluJo SINE Alu 3 151 -161 2418 87 7 0 chr12 50403438 50403736 -93878753 + AluSq SINE Alu 1 300 -13 1552 188 0 46 chr12 50403736 50403916 -93878573 + AluJo SINE Alu 151 311 -1 1695 179 0 19 chr12 50404115 50404433 -93878056 + AluJb SINE Alu 1 312 0 33 43 0 0 chr12 50404469 50404516 -93877973 + AT_rich Low_complexity Low_complexity 1 47 0 1762 139 40 15 chr12 50404610 50404884 -93877605 + AluSx SINE Alu 2 282 -30 2276 114 0 13 chr12 50405424 50405740 -93876749 + AluSx SINE Alu 1 312 0 728 226 22 100 chr12 50405755 50405985 -93876504 + MIR SINE MIR 30 241 -21 2305 101 0 0 chr12 50406079 50406366 -93876123 + AluSx SINE Alu 1 287 -25 2271 103 3 22 chr12 50407218 50407529 -93874960 + AluSx SINE Alu 1 305 -7 24 67 0 0 chr12 50407648 50407693 -93874796 + AT_rich Low_complexity Low_complexity 1 45 0 517 16 0 0 chr12 50407842 50407905 -93874584 + AluY SINE Alu 238 300 -10 294 265 60 8 chr12 50408344 50408450 -93874039 - MIR SINE MIR -91 117 9 24 0 0 0 chr12 50408539 50408563 -93873926 + AT_rich Low_complexity Low_complexity 1 24 0 2272 104 0 0 chr12 50409004 50409301 -93873188 + AluSg SINE Alu 1 297 -13 297 0 0 0 chr12 50409308 50409341 -93873148 + (GA)n Simple_repeat Simple_repeat 2 34 0 317 293 207 13 chr12 50411560 50411710 -93870779 - MIR3 SINE MIR -7 201 23 201 74 0 0 chr12 50411740 50411767 -93870722 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 299 179 15 0 chr12 50413374 50413441 -93869048 + GA-rich Low_complexity Low_complexity 2 69 0 201 217 72 14 chr12 50413910 50413979 -93868510 - MIR3 SINE MIR -28 180 108 231 312 32 32 chr12 50414053 50414178 -93868311 - L2 LINE L2 -17 3296 3172 446 169 11 0 chr12 50414341 50414430 -93868059 + CT-rich Low_complexity Low_complexity 3 92 0 184 183 17 33 chr12 50414853 50414913 -93867576 + CT-rich Low_complexity Low_complexity 3 61 0 591 273 166 65 chr12 50414916 50415477 -93867012 - L2 LINE L2 -5 3267 2647 5614 141 14 8 chr12 50416381 50417496 -93864993 - HERVH LTR ERV1 -2083 4571 3140 * 9385 187 18 43 chr12 50417482 50420073 -93862416 - HERVH LTR ERV1 -3622 2907 590 655 146 0 69 chr12 50420133 50420263 -93862226 - HERVH LTR ERV1 -7254 459 339 1244 199 107 57 chr12 50420292 50420714 -93861775 - LTR7 LTR ERV1 -7 443 1 950 81 0 8 chr12 50420715 50420839 -93861650 + MER4E LTR ERV1 641 763 -3 1633 164 23 7 chr12 50420844 50421149 -93861340 - L1M4 LINE L1 -392 5786 5477 603 199 6 12 chr12 50421149 50421310 -93861179 + CT-rich Low_complexity Low_complexity 4 163 0 854 158 14 53 chr12 50421312 50421522 -93860967 - L1M4 LINE L1 -688 5492 5315 1961 146 3 3 chr12 50421522 50421816 -93860673 - AluJb SINE Alu -18 294 1 4850 136 70 20 chr12 50421816 50422716 -93859773 - L1MC2 LINE L1 -109 6235 5291 2831 134 73 61 chr12 50422720 50423315 -93859174 - MER4B LTR ERV1 -7 772 1 799 157 13 13 chr12 50423315 50423474 -93859015 - L1MC2 LINE L1 -849 5297 5139 262 337 82 0 chr12 50423900 50423998 -93858491 + L2 LINE L2 3161 3266 -6 198 191 0 0 chr12 50424234 50424281 -93858208 + GA-rich Low_complexity Low_complexity 3 49 0 230 269 0 26 chr12 50424317 50424395 -93858094 + C-rich Low_complexity Low_complexity 2 77 0 255 299 22 52 chr12 50425407 50425541 -93856948 - L2 LINE L2 -9 3263 3134 1104 205 167 3 chr12 50425557 50425850 -93856639 - MER58B DNA MER1_type 0 341 1 1630 116 5 0 chr12 50425907 50426122 -93856367 + AluSx SINE Alu 1 216 -96 274 207 17 0 chr12 50428987 50429045 -93853444 + MIR SINE MIR 202 260 -2 2553 66 3 0 chr12 50430377 50430678 -93851811 + AluSp SINE Alu 1 302 -11 687 174 9 9 chr12 50430681 50430796 -93851693 - FLAM_A SINE Alu -18 115 1 372 325 82 14 chr12 50432098 50432378 -93850111 + L2 LINE L2 1894 2192 -1122 236 355 104 43 chr12 50432382 50432804 -93849685 + L2 LINE L2 2307 2754 -560 189 0 0 0 chr12 50433297 50433318 -93849171 + (TC)n Simple_repeat Simple_repeat 2 22 0 711 203 8 0 chr12 50433318 50433441 -93849048 - FLAM_A SINE Alu -9 124 1 432 236 0 0 chr12 50433533 50433622 -93848867 + L2 LINE L2 3225 3313 0 928 150 0 0 chr12 50434217 50434398 -93848091 - FLAM_C SINE Alu 0 181 1 377 311 138 13 chr12 50434883 50435108 -93847381 + MIR SINE MIR 10 262 0 180 179 0 0 chr12 50438984 50439023 -93843466 + CT-rich Low_complexity Low_complexity 5 43 0 3616 165 39 53 chr12 50440686 50440919 -93841570 - L1MD1 LINE L1 -19 6206 5971 2131 99 3 0 chr12 50440919 50441224 -93841265 - AluY SINE Alu 0 306 1 3616 165 39 53 chr12 50441224 50441781 -93840708 - L1MD1 LINE L1 -254 5971 5426 2111 132 0 7 chr12 50441781 50442091 -93840398 - AluSg SINE Alu -2 308 1 2149 116 0 10 chr12 50442091 50442383 -93840106 - AluSx SINE Alu -6 306 18 214 269 43 32 chr12 50443324 50443417 -93839072 + MIR SINE MIR 168 261 -1 2113 80 56 14 chr12 50443811 50444097 -93838392 + AluSg SINE Alu 2 299 -11 421 110 0 85 chr12 50494239 50494321 -93788168 + AluSg/x SINE Alu 216 290 -19 995 239 37 24 chr12 50494321 50494701 -93787788 - L1MD1 LINE L1 -963 5166 4782 1148 239 45 6 chr12 50494704 50495059 -93787430 - L1MD1 LINE L1 -1420 4709 4341 * 2041 124 39 117 chr12 50495040 50495477 -93787012 - L1PA13 LINE L1 -4 6159 5757 927 275 19 30 chr12 50495456 50495827 -93786662 - L1MD1 LINE L1 -1770 4359 3993 * 750 335 38 21 chr12 50496070 50496348 -93786141 - L1MD1 LINE L1 -2998 3131 2859 1979 139 3 0 chr12 50496348 50496642 -93785847 + AluSx SINE Alu 1 295 -17 181 0 33 33 chr12 50496645 50496675 -93785814 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 750 335 38 21 chr12 50496675 50496869 -93785620 - L1MD1 LINE L1 -3271 2858 2647 1567 136 121 11 chr12 50496921 50497280 -93785209 - MSTA LTR MaLR 0 428 1 284 0 28 0 chr12 50497468 50497504 -93784985 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 294 288 6 25 chr12 50497508 50497671 -93784818 - L1MD1 LINE L1 -3840 2289 2130 220 274 0 27 chr12 50497859 50497932 -93784557 + CT-rich Low_complexity Low_complexity 2 72 0 615 305 28 21 chr12 50498021 50498303 -93784186 - HAL1b LINE L1 -734 614 331 376 333 26 44 chr12 50498338 50498566 -93783923 - HAL1b LINE L1 -1082 266 43 843 64 0 0 chr12 50500618 50500728 -93781761 + (TTCC)n Simple_repeat Simple_repeat 1 110 0 1204 297 100 53 chr12 50500918 50501748 -93780741 - L1MD1 LINE L1 -4862 1257 356 1504 163 43 63 chr12 50501748 50502049 -93780440 - AluJo SINE Alu -16 296 2 1204 297 100 53 chr12 50502049 50502376 -93780113 - L1MD1 LINE L1 -5763 356 46 19127 164 24 40 chr12 50502439 50503854 -93778635 - L1MC2 LINE L1 -155 6189 4754 1069 78 0 26 chr12 50503854 50504008 -93778481 - L1PA10 LINE L1 -10 6158 6009 19127 164 24 40 chr12 50504008 50504530 -93777959 - L1MC2 LINE L1 -1590 4754 4225 2239 92 3 3 chr12 50504530 50504833 -93777656 - AluSg SINE Alu -7 303 1 19127 164 24 40 chr12 50504833 50505203 -93777286 - L1MC2 LINE L1 -2119 4225 3851 2381 66 0 23 chr12 50505203 50505506 -93776983 - AluY SINE Alu -15 296 1 19127 164 24 40 chr12 50505506 50505597 -93776892 - L1MC2 LINE L1 -2493 3851 3760 511 91 0 0 chr12 50505597 50505674 -93776815 - L1PA7 LINE L1 0 6154 6078 19127 164 24 40 chr12 50505674 50507731 -93774758 - L1MC2 LINE L1 -2584 3760 1858 2257 106 0 16 chr12 50507731 50508043 -93774446 + AluY SINE Alu 1 307 -4 19127 164 24 40 chr12 50508043 50509040 -93773449 - L1MC2 LINE L1 -4486 1858 847 687 98 0 0 chr12 50509038 50509130 -93773359 - L1P3 LINE L1 -6365 96 5 * 1158 249 120 44 chr12 50509134 50509450 -93773039 - L1MCa LINE L1 -4330 2277 1987 2455 90 0 6 chr12 50509450 50509761 -93772728 - AluY SINE Alu -2 309 1 1158 249 120 44 chr12 50509761 50510023 -93772466 - L1MCa LINE L1 -4620 1987 1746 194 0 0 37 chr12 50510023 50510050 -93772439 + (TG)n Simple_repeat Simple_repeat 2 27 0 1158 249 120 44 chr12 50510050 50510430 -93772059 - L1MCa LINE L1 -4861 1746 1396 7820 18 2 0 chr12 50510430 50511673 -93770816 - L1PA3 LINE L1 0 6155 4913 1158 249 120 44 chr12 50511673 50511745 -93770744 - L1MCa LINE L1 -5211 1396 959 225 200 0 0 chr12 50511832 50511877 -93770612 - MLT1I LTR MaLR -267 142 98 730 300 123 11 chr12 50511966 50512243 -93770246 + L2 LINE L2 2432 2739 -575 230 215 38 76 chr12 50512296 50512375 -93770114 - MER101 LTR ERV1 -29 445 370 528 271 121 19 chr12 50512558 50512765 -93769724 - MER101B LTR ERV1 -342 228 1 594 294 151 65 chr12 50512765 50513269 -93769220 + L2 LINE L2 2761 3313 0 211 286 78 13 chr12 50513551 50513628 -93768861 + L2 LINE L2 3186 3267 -5 362 338 86 0 chr12 50514620 50514818 -93767671 + L1ME4a LINE L1 5700 5914 -207 1577 223 49 13 chr12 50515033 50515419 -93767070 - MLT1C LTR MaLR -2 465 66 574 224 6 65 chr12 50515452 50515543 -93766946 - LTR33 LTR ERVL -361 160 82 3360 122 18 50 chr12 50515543 50516086 -93766403 + MER1A DNA MER1_type 2 527 0 574 224 6 65 chr12 50516086 50516164 -93766325 - LTR33 LTR ERVL -439 82 1 601 227 136 54 chr12 50516208 50516450 -93766039 - MLT1F1 LTR MaLR -246 321 60 904 292 59 33 chr12 50516543 50516635 -93765854 + MLT1L LTR MaLR 109 197 -418 1860 164 32 18 chr12 50516635 50516663 -93765826 - MER7A DNA MER2_type -2692 346 320 1598 88 9 18 chr12 50516663 50516880 -93765609 - AluY SINE Alu -14 297 83 1860 164 32 18 chr12 50516880 50517193 -93765296 - MER7A DNA MER2_type -2718 320 2 904 292 59 33 chr12 50517193 50517590 -93764899 + MLT1L LTR MaLR 197 611 -4 619 275 22 17 chr12 50517652 50517830 -93764659 + MIR SINE MIR 84 262 0 361 295 187 7 chr12 50518000 50518139 -93764350 - MIR SINE MIR -67 195 32 348 267 86 27 chr12 50518140 50518327 -93764162 - L1MC/D LINE L1 -332 5789 5627 2020 114 3 27 chr12 50518521 50518820 -93763669 - AluSx SINE Alu -20 292 1 1491 175 94 77 chr12 50519181 50519654 -93762835 - MER66A LTR ERV1 0 478 97 1656 182 55 0 chr12 50520269 50520560 -93761929 - AluJo SINE Alu -5 307 1 237 177 35 57 chr12 50520776 50520917 -93761572 + (TATAA)n Simple_repeat Simple_repeat 5 142 0 2084 123 17 7 chr12 50520938 50521230 -93761259 + AluSx SINE Alu 1 295 -17 3805 161 55 52 chr12 50521246 50522176 -93760313 - L1MC3 LINE L1 -8 7777 6845 2436 161 66 108 chr12 50522173 50522813 -93759676 - L1M4c LINE L1 -5767 617 5 * 4767 148 25 80 chr12 50522933 50523876 -93758613 + L1MA5 LINE L1 5118 6019 -281 2276 107 0 0 chr12 50523876 50524174 -93758315 + AluSg SINE Alu 5 302 -8 4767 148 25 80 chr12 50524174 50524442 -93758047 + L1MA5 LINE L1 6019 6300 0 2053 294 58 25 chr12 50524455 50525467 -93757022 + HAL1 LINE L1 121 1166 -1341 465 231 0 0 chr12 50525500 50525591 -93756898 - Tigger3(Golem) DNA MER2_type 0 3037 2947 966 169 196 8 chr12 50525834 50526089 -93756400 + MER58B DNA MER1_type 32 334 -7 368 305 152 6 chr12 50528233 50528397 -93754092 - MIR SINE MIR -71 191 4 412 72 0 155 chr12 50528524 50528571 -93753918 + MER41A LTR ERV1 400 426 -128 2451 69 10 0 chr12 50528571 50528877 -93753612 - AluY SINE Alu -2 309 1 412 72 0 155 chr12 50528877 50528926 -93753563 + MER41A LTR ERV1 426 481 -73 283 93 0 37 chr12 50528926 50528980 -93753509 + (GAA)n Simple_repeat Simple_repeat 1 52 0 254 287 113 0 chr12 50529299 50529414 -93753075 + MIR3 SINE MIR 34 161 -47 286 274 97 18 chr12 50530597 50530710 -93751779 - L2 LINE L2 -3 3310 3189 443 320 88 22 chr12 50530830 50531149 -93751340 + L1M3 LINE L1 4926 5265 -881 853 259 76 12 chr12 50531152 50531594 -93750895 - MER90 LTR ERV1 -16 559 53 282 212 172 0 chr12 50531623 50531774 -93750715 + L1M3 LINE L1 5261 5437 -743 650 157 32 3 chr12 50531779 50532003 -93750486 + AluJo SINE Alu 1 305 0 588 265 114 50 chr12 50532007 50532550 -93749939 + L1ME4a LINE L1 5529 6106 -15 27 73 0 0 chr12 50532979 50533034 -93749455 + AT_rich Low_complexity Low_complexity 1 55 0 1126 222 21 18 chr12 50533951 50534235 -93748254 + MLT1A1 LTR MaLR 1 285 -80 38 39 0 0 chr12 50534235 50534287 -93748202 + AT_rich Low_complexity Low_complexity 1 52 0 388 153 14 0 chr12 50534287 50534359 -93748130 + MLT1A1 LTR MaLR 293 365 0 381 264 111 21 chr12 50534367 50534511 -93747978 + MIR SINE MIR 41 197 -65 327 315 31 31 chr12 50534519 50534646 -93747843 + L2 LINE L2 3187 3313 0 201 121 0 0 chr12 50534686 50534719 -93747770 + (TTA)n Simple_repeat Simple_repeat 3 35 0 390 276 102 70 chr12 50535468 50535842 -93746647 + L1ME3A LINE L1 5106 5467 -703 1966 161 23 7 chr12 50535842 50536147 -93746342 + AluJb SINE Alu 1 310 -2 390 276 102 70 chr12 50536147 50536496 -93745993 + L1ME3A LINE L1 5467 5866 -304 225 0 0 0 chr12 50536673 50536698 -93745791 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2211 70 3 45 chr12 50536870 50537216 -93745273 + AluSp SINE Alu 1 313 0 861 144 62 0 chr12 50539272 50539418 -93743071 - AluJo SINE Alu -7 295 141 423 191 291 0 chr12 50539427 50539568 -93742921 + MIR SINE MIR 80 261 -1 264 292 200 0 chr12 50539607 50539737 -93742752 + L2 LINE L2 3102 3257 -15 213 234 21 0 chr12 50539762 50539809 -93742680 + CT-rich Low_complexity Low_complexity 4 51 0 1595 147 19 67 chr12 50539891 50540278 -93742211 + MER67C LTR ERV1 1 400 -245 259 206 346 0 chr12 50540298 50540405 -93742084 + MER67D LTR ERV1 363 506 -8 270 0 0 0 chr12 50540560 50540590 -93741899 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2003 152 0 0 chr12 50540592 50540875 -93741614 - AluSx SINE Alu -29 283 1 256 138 0 35 chr12 50541641 50541699 -93740790 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 1590 161 72 10 chr12 50541699 50541991 -93740498 - AluJb SINE Alu -2 310 1 456 342 31 35 chr12 50543609 50543866 -93738623 + L3 LINE CR1 948 1203 -374 725 176 0 63 chr12 50544566 50544708 -93737781 - AluJo SINE Alu -169 133 1 1827 100 0 8 chr12 50545790 50546039 -93736450 - AluSg SINE Alu -26 284 38 521 59 0 0 chr12 50546069 50546137 -93736352 + AluS SINE Alu 1 68 -245 472 238 107 21 chr12 50546185 50546466 -93736023 + L1M4 LINE L1 4106 4410 -1736 * 6749 176 18 12 chr12 50546463 50547927 -93734562 + L1PA16 LINE L1 3877 5352 -814 2228 67 24 7 chr12 50547927 50548225 -93734264 - AluY SINE Alu -8 303 1 6749 176 18 12 chr12 50548225 50548494 -93733995 + L1PA16 LINE L1 5352 5618 -548 2357 122 14 0 chr12 50548621 50548982 -93733507 + L1PA16 LINE L1 5798 6163 -3 7673 18 2 1 chr12 50549048 50550636 -93731853 + L1PA3 LINE L1 4590 6178 0 2103 118 3 29 chr12 50550651 50550964 -93731525 - AluSx SINE Alu -7 305 1 1810 188 10 0 chr12 50551686 50551995 -93730494 - AluJo SINE Alu 0 312 1 369 267 29 0 chr12 50552225 50552330 -93730159 + L2 LINE L2 3195 3302 -11 264 59 0 0 chr12 50552731 50552765 -93729724 + (TC)n Simple_repeat Simple_repeat 1 34 0 438 20 0 0 chr12 50552782 50552833 -93729656 + (TG)n Simple_repeat Simple_repeat 1 51 0 198 299 154 36 chr12 50553814 50554035 -93728454 + L3b LINE CR1 1203 1449 -134 206 339 142 8 chr12 50554201 50554328 -93728161 - MIR SINE MIR -115 147 4 5969 107 58 11 chr12 50554541 50555507 -93726982 - L1MA8 LINE L1 0 6291 5281 387 0 0 0 chr12 50555652 50555686 -93726803 + (TG)n Simple_repeat Simple_repeat 1 77 0 387 0 0 0 chr12 50555686 50555729 -93726760 + (TG)n Simple_repeat Simple_repeat 2 44 0 2710 110 77 28 chr12 50556243 50556670 -93725819 + MER83 LTR ERV1 1 448 0 187 345 24 0 chr12 50556795 50556879 -93725610 + L3 LINE CR1 1041 1126 -451 2166 99 0 3 chr12 50557560 50557906 -93724583 - AluSg1 SINE Alu 0 345 1 1150 261 86 58 chr12 50560281 50560550 -93721939 - L1M4 LINE L1 -2073 4073 3813 1736 131 52 49 chr12 50560550 50560856 -93721633 + AluJo SINE Alu 6 312 0 1150 261 86 58 chr12 50560856 50561299 -93721190 - L1M4 LINE L1 -2333 3813 3341 2404 60 3 3 chr12 50561313 50561611 -93720878 + AluY SINE Alu 1 298 -13 312 136 106 0 chr12 50561619 50561685 -93720804 - MLT1D LTR MaLR 0 505 433 1047 186 61 96 chr12 50561762 50562074 -93720415 - MLT1E1 LTR MaLR -67 587 287 294 248 64 57 chr12 50562131 50562272 -93720217 - L1MDa LINE L1 -4734 1806 1665 2085 137 0 3 chr12 50562417 50562717 -93719772 - AluJb SINE Alu -2 310 12 231 242 0 0 chr12 50562768 50562830 -93719659 + CT-rich Low_complexity Low_complexity 1 62 0 2189 97 37 0 chr12 50562830 50563128 -93719361 - AluSx SINE Alu -2 310 2 310 256 51 58 chr12 50563540 50563696 -93718793 - L1M4 LINE L1 -3098 3048 2894 183 422 0 0 chr12 50563709 50563811 -93718678 + L3 LINE CR1 1256 1357 -220 216 269 39 26 chr12 50563990 50564068 -93718421 - L2 LINE L2 -26 3246 3168 556 305 30 0 chr12 50564590 50564721 -93717768 + MER91A DNA MER1_type 18 152 -44 3847 75 15 2 chr12 50564721 50565199 -93717290 + L1PA11 LINE L1 5691 6174 0 209 299 30 0 chr12 50565218 50565285 -93717204 + MER91A DNA MER1_type 128 196 0 865 233 11 11 chr12 50565442 50565631 -93716858 + MER5A DNA MER1_type 1 189 0 846 229 30 0 chr12 50565639 50565805 -93716684 + MER58A DNA MER1_type 1 171 -53 565 174 0 0 chr12 50565808 50565906 -93716583 + MER53 DNA DNA 1 98 -91 329 229 0 0 chr12 50565923 50565984 -93716505 + MER58A DNA MER1_type 164 224 0 301 248 20 30 chr12 50566591 50566692 -93715797 + L1M4 LINE L1 3073 3172 -2974 3651 223 11 0 chr12 50566693 50567528 -93714961 - L1P5 LINE L1 -2725 3421 2578 * 9570 175 28 4 chr12 50567525 50569854 -93712635 + L1P5 LINE L1 3431 5792 -359 271 227 45 0 chr12 50569856 50569944 -93712545 + L1MC4 LINE L1 6614 6705 -1337 226 165 63 19 chr12 50569933 50570038 -93712451 + L1MC4 LINE L1 1996 6983 -1339 * 2626 117 5 0 chr12 50570051 50570419 -93712070 + L1PB1 LINE L1 5782 6151 0 2440 68 3 0 chr12 50570496 50570789 -93711700 + AluSp SINE Alu 2 295 -18 478 214 0 0 chr12 50571059 50571148 -93711341 + MER5B DNA MER1_type 1 89 -89 661 224 0 0 chr12 50571160 50571267 -93711222 + FRAM SINE Alu 1 106 -70 25 0 0 0 chr12 50571545 50571570 -93710919 + AT_rich Low_complexity Low_complexity 1 25 0 319 230 35 11 chr12 50571814 50571901 -93710588 - MIR SINE MIR -14 248 160 640 54 140 11 chr12 50572121 50572214 -93710275 + MER51A LTR ERV1 1 105 -529 1983 139 41 6 chr12 50572229 50572545 -93709944 + MER51B LTR ERV1 49 375 -2 2054 75 0 4 chr12 50574504 50574814 -93707675 + AluY SINE Alu 35 311 0 280 217 87 43 chr12 50574883 50574952 -93707537 - MIR3 SINE MIR -51 157 86 892 201 37 53 chr12 50575279 50575407 -93707082 + MER5A DNA MER1_type 1 129 -60 1744 136 28 28 chr12 50575407 50575732 -93706757 - AluJb SINE Alu 0 325 1 892 201 37 53 chr12 50575732 50575790 -93706699 + MER5A DNA MER1_type 129 186 -3 625 194 15 22 chr12 50576108 50576242 -93706247 + AluJo SINE Alu 2 134 -178 518 0 16 0 chr12 50576253 50576315 -93706174 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 1510 164 3 45 chr12 50576355 50576665 -93705824 + AluJb SINE Alu 1 297 -15 183 42 0 0 chr12 50577148 50577172 -93705317 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1770 123 95 58 chr12 50577889 50578214 -93704275 - MER1B DNA MER1_type 0 337 1 24 77 0 0 chr12 50578835 50578887 -93703602 + AT_rich Low_complexity Low_complexity 1 52 0 709 227 207 5 chr12 50579594 50579797 -93702692 - MER45C DNA AcHobo -709 244 1 1036 226 144 33 chr12 50581325 50581630 -93700859 - Charlie1a DNA MER1_type -1116 339 1 939 202 59 95 chr12 50581886 50582165 -93700324 - L1MDa LINE L1 -4796 1744 1456 4534 62 20 0 chr12 50582165 50582711 -93699778 - L1PA7 LINE L1 0 6154 5598 939 202 59 95 chr12 50582711 50582747 -93699742 - L1MDa LINE L1 -5084 1456 1420 2094 109 0 35 chr12 50582747 50583058 -93699431 - AluSx SINE Alu -12 300 1 939 202 59 95 chr12 50583058 50583202 -93699287 - L1MDa LINE L1 -5120 1420 1301 2251 88 3 3 chr12 50583209 50583506 -93698983 - AluSc SINE Alu -12 297 1 694 272 25 71 chr12 50583981 50584305 -93698184 - L1MDa LINE L1 -6230 310 2 23 68 0 0 chr12 50584512 50584556 -93697933 + AT_rich Low_complexity Low_complexity 1 44 0 2297 85 3 7 chr12 50584788 50585083 -93697406 - AluY SINE Alu -16 295 2 440 111 100 0 chr12 50585261 50585351 -93697138 - L1MA5 LINE L1 -1 6299 6201 289 188 42 52 chr12 50585366 50585462 -93697027 - LTR41 LTR ERVL -6 767 673 319 281 0 0 chr12 50585941 50586005 -93696484 - MER58 DNA MER1_type -322 64 1 905 218 0 6 chr12 50586037 50586216 -93696273 - LTR41 LTR ERVL -595 178 1 232 239 204 18 chr12 50586414 50586527 -93695962 + MIR SINE MIR 126 259 -3 2903 3 0 0 chr12 50586529 50586837 -93695652 - AluYa5 SINE Alu -3 308 1 2735 29 3 6 chr12 50589109 50589420 -93693069 - L1PA2 LINE L1 0 6155 5846 911 125 15 0 chr12 50589440 50589576 -93692913 + AluSg/x SINE Alu 160 297 -15 231 179 26 0 chr12 50589606 50589645 -93692844 - MLT1K LTR MaLR -363 225 186 44636 38 2 2 chr12 50589801 50595783 -93686706 - L1PA3 LINE L1 -150 6005 26 233 381 12 12 chr12 50596373 50596457 -93686032 + MIR SINE MIR 7 90 -172 220 261 269 8 chr12 50596595 50596714 -93685775 + MER5A DNA MER1_type 40 189 0 1796 157 20 20 chr12 50596718 50596856 -93685633 + AluSx SINE Alu 1 138 -174 2251 105 0 13 chr12 50596856 50597160 -93685329 + AluSx SINE Alu 1 300 -12 1796 157 20 20 chr12 50597160 50597320 -93685169 + AluSx SINE Alu 137 299 -13 358 267 83 33 chr12 50600427 50600547 -93681942 + MIR3 SINE MIR 45 170 -38 6517 60 16 54 chr12 50601307 50602299 -93680190 - SVA Other Other 0 1386 433 31 110 0 0 chr12 50602176 50602312 -93680177 + GC_rich Low_complexity Low_complexity 1 136 0 2646 85 21 81 chr12 50602366 50603366 -93679123 - SVA Other Other -520 866 393 1847 146 3 14 chr12 50603760 50604055 -93678434 + AluJb SINE Alu 9 300 -12 669 195 107 87 chr12 50604738 50604980 -93677509 + MER61D LTR ERV1 338 559 -3 195 327 139 0 chr12 50605091 50605192 -93677297 - L2 LINE L2 -1 3271 3157 268 318 149 0 chr12 50605363 50605470 -93677019 - L2 LINE L2 -4 3268 3146 565 203 108 75 chr12 50605635 50605847 -93676642 + L1M2 LINE L1 5335 5556 -741 305 212 153 0 chr12 50606403 50606488 -93676001 + MER96 DNA MER1_type? 78 175 0 198 194 16 81 chr12 50607074 50607136 -93675353 + L2 LINE L2 3248 3305 -8 2278 79 0 30 chr12 50607146 50607449 -93675040 + AluY SINE Alu 1 294 -17 225 288 51 0 chr12 50608240 50608299 -93674190 + tRNA-Thr-ACT tRNA tRNA 1 62 -15 988 168 21 37 chr12 50608922 50609112 -93673377 - MER5A DNA MER1_type 0 189 3 326 238 41 33 chr12 50612091 50612213 -93670276 + MER103 DNA DNA 9 131 -35 304 229 322 44 chr12 50613482 50613687 -93668802 + MIR SINE MIR 1 262 0 180 246 70 0 chr12 50613793 50613850 -93668639 + L3 LINE CR1 1465 1525 -52 469 206 282 24 chr12 50613867 50614037 -93668452 - MIR SINE MIR 0 262 49 2233 96 7 7 chr12 50615518 50615811 -93666678 - AluSg SINE Alu -17 293 1 723 219 176 0 chr12 50615830 50616035 -93666454 + MIR SINE MIR 2 242 -20 2044 150 0 10 chr12 50616336 50616650 -93665839 + AluSx SINE Alu 1 311 -1 265 385 113 10 chr12 50617839 50618034 -93664455 + L3 LINE CR1 5 219 -1358 234 333 164 26 chr12 50618573 50618804 -93663685 + L3b LINE CR1 1102 1364 -219 29 28 0 0 chr12 50620511 50620547 -93661942 + GC_rich Low_complexity Low_complexity 1 36 0 279 97 32 16 chr12 50620601 50620663 -93661826 + GA-rich Low_complexity Low_complexity 1 63 0 511 155 217 11 chr12 50621072 50621291 -93661198 + MER33 DNA MER1_type 5 323 -1 231 217 83 17 chr12 50621489 50621549 -93660940 - L2 LINE L2 -2 3311 3248 634 276 76 32 chr12 50621943 50622312 -93660177 - MLT1J2 LTR MaLR -46 404 20 2026 110 64 3 chr12 50622480 50622762 -93659727 + AluSg SINE Alu 1 299 -11 7495 93 8 24 chr12 50622826 50624042 -93658447 - L1MA2 LINE L1 0 6304 5108 397 262 41 25 chr12 50624768 50624890 -93657599 - L2 LINE L2 -2483 831 708 626 262 53 25 chr12 50625154 50625398 -93657091 - L2 LINE L2 -2596 718 468 255 299 179 8 chr12 50626612 50626746 -93655743 - MIR3 SINE MIR 0 208 52 1727 135 6 86 chr12 50627039 50627365 -93655124 - AluJo SINE Alu -12 300 1 241 341 79 24 chr12 50627457 50627583 -93654906 + MIR3 SINE MIR 13 145 -63 1186 135 42 0 chr12 50627736 50627928 -93654561 - L1PB4 LINE L1 -2 6154 5955 260 309 10 0 chr12 50628719 50628816 -93653673 + MIR3 SINE MIR 82 179 -29 190 208 0 21 chr12 50629604 50629652 -93652837 + L2 LINE L2 1365 1411 -1903 2243 125 0 0 chr12 50629975 50630286 -93652203 + AluSx SINE Alu 1 311 -1 2343 198 29 2 chr12 50630619 50631034 -93651455 + MSTB LTR MaLR 1 426 0 993 280 73 10 chr12 50631159 50631459 -93651030 - MLT1I LTR MaLR 0 409 91 267 348 78 20 chr12 50631840 50632136 -93650353 - HAL1 LINE L1 -764 1743 1431 731 208 14 0 chr12 50632294 50632438 -93650051 - L1MA10 LINE L1 0 6334 6189 247 247 97 19 chr12 50633008 50633162 -93649327 + L1M4 LINE L1 4854 5019 -1127 1265 97 5 39 chr12 50633243 50633450 -93649039 - AluSc SINE Alu 0 309 110 275 288 22 43 chr12 50633627 50633766 -93648723 + FRAM SINE Alu 31 166 0 487 136 126 0 chr12 50633812 50633915 -93648574 - L1MA7 LINE L1 -7 6284 6169 414 0 0 0 chr12 50633925 50633971 -93648518 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4277 82 47 12 chr12 50633975 50634551 -93647938 - L1PA13 LINE L1 -5 6158 5563 416 97 0 16 chr12 50634551 50634613 -93647876 + MER5B DNA MER1_type 117 177 -1 462 330 46 20 chr12 50634720 50635112 -93647377 + L1M4 LINE L1 3587 3988 -2158 666 260 85 36 chr12 50635165 50635388 -93647101 - MIR SINE MIR -27 235 2 1843 193 120 15 chr12 50635450 50635843 -93646646 + MER63B DNA MER1_type 2 435 -1 23 0 0 0 chr12 50636334 50636357 -93646132 + AT_rich Low_complexity Low_complexity 1 23 0 555 258 54 6 chr12 50636359 50636525 -93645964 - MIR SINE MIR -50 212 40 324 243 56 19 chr12 50637103 50637210 -93645279 + L3b LINE CR1 1276 1386 -197 2008 141 3 32 chr12 50637225 50637538 -93644951 - AluSx SINE Alu -8 304 1 271 343 70 14 chr12 50637966 50638109 -93644380 + L2 LINE L2 2917 3067 -205 3257 162 33 86 chr12 50638377 50639107 -93643382 + LTR8 LTR ERV1 1 691 0 3901 158 23 5 chr12 50639511 50640119 -93642370 - LTR31 LTR ERV1 0 619 1 242 272 97 26 chr12 50640997 50641111 -93641378 + Charlie8 DNA MER1_type 129 250 -2167 360 175 0 0 chr12 50641582 50641639 -93640850 + L1ME4a LINE L1 5565 5621 -500 622 270 81 31 chr12 50641658 50641880 -93640609 + MIR SINE MIR 25 257 -5 520 278 48 121 chr12 50641898 50642377 -93640112 + L1ME4a LINE L1 5636 6079 -42 526 76 0 0 chr12 50642599 50642665 -93639824 + L1PA8 LINE L1 6102 6167 -5 4271 136 54 0 chr12 50644053 50644231 -93638258 + Tigger1 DNA MER2_type 1 168 -2250 264 59 0 0 chr12 50644231 50644265 -93638224 + (TTA)n Simple_repeat Simple_repeat 3 36 0 4271 136 54 0 chr12 50644265 50644755 -93637734 + Tigger1 DNA MER2_type 168 705 -1713 * 4301 109 10 3 chr12 50644752 50645365 -93637124 + Tigger1 DNA MER2_type 863 1479 -939 735 257 23 6 chr12 50645361 50645532 -93636957 + MER21B LTR ERV1 323 496 -367 * 1929 45 0 0 chr12 50645812 50646033 -93636456 + AluY SINE Alu 85 305 -6 1750 147 58 10 chr12 50646343 50646635 -93635854 + AluJb SINE Alu 1 306 -6 4194 102 5 10 chr12 50646984 50647581 -93634908 + Tigger1 DNA MER2_type 1465 2058 -360 844 184 6 17 chr12 50647581 50647760 -93634729 - FAM SINE Alu -5 44 1 2070 134 3 6 chr12 50647760 50648081 -93634408 + Tigger1 DNA MER2_type 2056 2375 -43 262 356 7 0 chr12 50648850 50648999 -93633490 + A-rich Low_complexity Low_complexity 3 152 0 261 0 0 0 chr12 50649414 50649443 -93633046 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 293 0 27 0 chr12 50650088 50650125 -93632364 + (CA)n Simple_repeat Simple_repeat 1 38 0 252 293 0 49 chr12 50650786 50650868 -93631621 - MIR SINE MIR -138 124 47 319 293 0 19 chr12 50650993 50651099 -93631390 + MER5A DNA MER1_type 15 118 -71 377 291 77 32 chr12 50651115 50651216 -93631273 + L1MC4a LINE L1 2750 2845 -3301 747 176 0 7 chr12 50651216 50651352 -93631137 + L1MA10 LINE L1 6197 6331 -3 377 291 77 32 chr12 50651352 50651497 -93630992 + L1MC4a LINE L1 2845 3007 -3139 308 317 137 34 chr12 50651499 50651821 -93630668 + L1MC4a LINE L1 3380 3734 -2412 210 143 0 0 chr12 50651926 50651961 -93630528 + (TA)n Simple_repeat Simple_repeat 2 36 0 853 289 119 39 chr12 50652001 50653439 -93629050 + L1MC4a LINE L1 3928 5025 -1121 2354 103 0 3 chr12 50653439 50653750 -93628739 + AluSx SINE Alu 1 310 -2 853 289 119 39 chr12 50653750 50654158 -93628331 + L1MC4a LINE L1 5025 5399 -747 28 29 0 0 chr12 50655172 50655207 -93627282 + AT_rich Low_complexity Low_complexity 1 35 0 2516 85 11 6 chr12 50655245 50655599 -93626890 - L1PB1 LINE L1 -13 6138 5783 248 141 13 39 chr12 50655605 50655683 -93626806 + (TA)n Simple_repeat Simple_repeat 1 76 0 6850 128 36 12 chr12 50655693 50657018 -93625471 + L1MA2 LINE L1 4687 6072 -232 240 35 0 0 chr12 50657018 50657047 -93625442 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 6850 128 36 12 chr12 50657047 50657286 -93625203 + L1MA2 LINE L1 6072 6304 0 1334 184 36 183 chr12 50657318 50658083 -93624406 + MER69 DNA AcHobo 1492 2119 -407 2938 6 0 0 chr12 50658083 50658401 -93624088 - AluYb8 SINE Alu 0 318 1 1334 184 36 183 chr12 50658401 50658495 -93623994 + MER69 DNA AcHobo 2119 2225 -301 227 229 72 0 chr12 50658551 50658634 -93623855 - HAL1 LINE L1 -375 2132 2044 1053 199 28 0 chr12 50658637 50658848 -93623641 - AluJo SINE Alu -12 300 84 22 0 0 0 chr12 50658940 50658962 -93623527 + AT_rich Low_complexity Low_complexity 1 22 0 825 203 56 49 chr12 50658973 50659279 -93623210 - L1MC5 LINE L1 -51 7910 7603 1408 177 78 45 chr12 50659283 50659730 -93622759 - L1MC5 LINE L1 -416 7545 7084 470 329 41 43 chr12 50659815 50660232 -93622257 - HAL1b LINE L1 -774 574 159 976 155 207 52 chr12 50660303 50660554 -93621935 + AluJo SINE Alu 1 290 -12 1791 125 14 7 chr12 50660598 50660879 -93621610 + AluSx SINE Alu 3 285 -27 1120 140 60 157 chr12 50660899 50660964 -93621525 - Charlie4a DNA MER1_type -1552 409 339 2863 111 53 31 chr12 50660964 50661476 -93621013 + L1MB3 LINE L1 5661 6183 0 1120 140 60 157 chr12 50661476 50661823 -93620666 - Charlie4a DNA MER1_type -1622 339 37 791 246 167 21 chr12 50661960 50662248 -93620241 - L1ME2 LINE L1 -2 6162 5833 1228 131 0 0 chr12 50662252 50662427 -93620062 - AluSg/x SINE Alu -8 302 128 1403 182 68 5 chr12 50662447 50662813 -93619676 - L1ME2 LINE L1 -347 5817 5363 2612 36 3 3 chr12 50662814 50663118 -93619371 - AluY SINE Alu -7 304 1 508 234 19 9 chr12 50663199 50663306 -93619183 + FLAM_C SINE Alu 1 108 -35 271 188 42 52 chr12 50663554 50663650 -93618839 + LTR41 LTR ERVL 673 767 -6 405 122 100 0 chr12 50663665 50663755 -93618734 + L1MA5 LINE L1 6201 6299 -1 1384 103 5 0 chr12 50663866 50664051 -93618438 - AluSc SINE Alu -123 186 1 240 291 71 25 chr12 50664079 50664275 -93618214 - L1ME2 LINE L1 -1314 4832 4628 265 259 0 18 chr12 50665244 50665356 -93617133 - L1ME2 LINE L1 -3158 2988 2879 2486 57 0 10 chr12 50665485 50665799 -93616690 - AluY SINE Alu 0 311 1 1817 175 7 7 chr12 50665881 50666178 -93616311 + AluJo SINE Alu 1 297 -15 1378 212 58 49 chr12 50666276 50666705 -93615784 - MLT1C LTR MaLR -18 449 17 256 299 25 5 chr12 50666917 50667118 -93615371 - L1ME2 LINE L1 -3821 2325 2121 3172 231 102 27 chr12 50667406 50668507 -93613982 + L1ME LINE L1 3543 4725 -1421 2618 208 74 22 chr12 50668500 50669121 -93613368 + L1M3e LINE L1 1 653 -6377 * 4200 166 34 14 chr12 50669114 50669947 -93612542 + L1M3e LINE L1 1763 2611 -4496 229 57 0 0 chr12 50669953 50669988 -93612501 + L1M3e LINE L1 2594 2628 -4479 5606 145 44 17 chr12 50669995 50671410 -93611079 + L1MA8 LINE L1 4848 6291 0 1602 256 52 8 chr12 50671405 50672379 -93610110 + L1ME LINE L1 4695 5704 -460 * 4942 173 31 39 chr12 50672376 50673117 -93609372 + L1MA10 LINE L1 5051 5802 -532 213 39 0 0 chr12 50673117 50673143 -93609346 + (TG)n Simple_repeat Simple_repeat 1 26 0 4942 173 31 39 chr12 50673143 50673660 -93608829 + L1MA10 LINE L1 5802 6321 -13 1980 53 72 0 chr12 50673670 50673934 -93608555 + L1PA4 LINE L1 5870 6152 -3 878 231 71 29 chr12 50673965 50674315 -93608174 + L1M4 LINE L1 4212 4576 -1570 985 242 70 110 chr12 50674315 50675118 -93607371 + LTR41 LTR ERVL 3 773 0 602 345 78 26 chr12 50675401 50676224 -93606265 + HERVL LTR ERVL 352 1244 -4410 299 109 0 0 chr12 50676232 50676278 -93606211 - Alu SINE Alu -1 299 254 5753 308 55 23 chr12 50676597 50676942 -93605547 + HERVL LTR ERVL 1583 1916 -3738 2251 99 10 10 chr12 50676942 50677255 -93605234 + AluSq SINE Alu 1 313 0 5753 308 55 23 chr12 50677255 50678803 -93603686 + HERVL LTR ERVL 1916 3562 -2092 2012 145 7 0 chr12 50678803 50679099 -93603390 - AluJb SINE Alu -14 298 1 5753 308 55 23 chr12 50679099 50679467 -93603022 + HERVL LTR ERVL 3562 3917 -1737 718 172 103 35 chr12 50729513 50729658 -93552831 + LTR69 LTR ERVL 1 155 -433 * 1027 144 0 0 chr12 50729619 50729772 -93552717 - LTR69 LTR ERVL -435 153 1 302 213 150 24 chr12 50730181 50730308 -93552181 - MER46A DNA MER2_type -90 146 4 * 1200 165 15 0 chr12 50730308 50730399 -93552090 + MER46A DNA MER2_type 141 234 -2 1938 143 3 3 chr12 50730505 50730812 -93551677 + AluSq SINE Alu 1 307 -6 2093 93 7 29 chr12 50732205 50732515 -93549974 + AluSc SINE Alu 1 303 -6 23 68 0 0 chr12 50733473 50733517 -93548972 + AT_rich Low_complexity Low_complexity 1 44 0 2147 103 0 10 chr12 50734215 50734506 -93547983 - AluSq SINE Alu -25 288 1 1452 148 104 32 chr12 50736032 50736310 -93546179 + AluJo SINE Alu 1 298 -14 230 317 124 65 chr12 50736359 50736545 -93545944 + MIR SINE MIR 28 224 -38 4083 204 43 88 chr12 50737686 50738781 -93543708 + HERVL LTR ERVL 669 1696 -3958 49 43 0 0 chr12 50739246 50739316 -93543173 + AT_rich Low_complexity Low_complexity 1 70 0 2260 89 3 13 chr12 50739435 50739751 -93542738 - AluSq SINE Alu 0 313 1 185 295 105 11 chr12 50741511 50741606 -93540883 + L3b LINE CR1 1277 1380 -203 283 293 100 10 chr12 50741629 50741790 -93540699 - MLT1J LTR MaLR -8 443 261 180 32 32 32 chr12 50741803 50741834 -93540655 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 271 191 15 0 chr12 50741852 50741920 -93540569 - AluJb SINE Alu -34 268 200 2105 103 0 0 chr12 50742857 50743149 -93539340 + AluSg SINE Alu 1 292 -18 1378 172 0 78 chr12 50743318 50743638 -93538851 + AluJo SINE Alu 1 295 -17 2010 147 28 3 chr12 50743795 50744122 -93538367 + MER7A DNA MER2_type 2 334 -12 2663 119 44 47 chr12 50744388 50745500 -93536989 - SVA Other Other -518 1004 420 21 36 0 0 chr12 50745728 50745756 -93536733 + GC_rich Low_complexity Low_complexity 1 28 0 498 108 0 0 chr12 50746021 50746095 -93536394 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 2528 109 16 56 chr12 50746095 50746545 -93535944 + SVA Other Other 1 432 -954 1194 83 0 0 chr12 50746545 50746702 -93535787 - AluSx SINE Alu -155 157 1 1978 131 7 0 chr12 50746704 50747001 -93535488 - AluSq SINE Alu -14 299 1 232 342 128 0 chr12 50747062 50747179 -93535310 - L2 LINE L2 -1 3312 3181 1020 191 0 0 chr12 50747314 50747487 -93535002 - FAM SINE Alu -2 173 1 1993 96 65 7 chr12 50747544 50747835 -93534654 - AluSc SINE Alu -1 308 1 668 95 39 6 chr12 50748582 50748759 -93533730 + L1PA13 LINE L1 5896 6163 0 273 29 0 0 chr12 50749250 50749284 -93533205 + (T)n Simple_repeat Simple_repeat 1 34 0 606 140 50 10 chr12 50750500 50750600 -93531889 - MLT1C LTR MaLR -363 104 1 715 201 7 0 chr12 50750823 50750977 -93531512 - L1MA10 LINE L1 -2 6332 6178 407 244 69 8 chr12 50750978 50751109 -93531380 - L1ME3 LINE L1 -138 6024 5886 776 203 14 88 chr12 50751110 50751164 -93531325 - MLT1A1 LTR MaLR -1 364 308 2105 103 0 3 chr12 50751164 50751456 -93531033 - AluSg SINE Alu -19 291 1 776 203 14 88 chr12 50751456 50751618 -93530871 - MLT1A1 LTR MaLR -57 308 164 891 182 10 47 chr12 50751634 50751826 -93530663 - MLT1A1 LTR MaLR -171 194 10 650 157 41 34 chr12 50751827 50751974 -93530515 - L1ME LINE L1 -688 5478 5331 2475 69 0 0 chr12 50752114 50752420 -93530069 - AluY SINE Alu -4 307 2 391 284 97 22 chr12 50752931 50753155 -93529334 - L1ME LINE L1 -1232 4914 4672 2330 88 0 0 chr12 50753163 50753469 -93529020 - AluSg SINE Alu -4 306 1 1814 126 40 4 chr12 50753470 50753747 -93528742 - AluSx SINE Alu -19 293 7 2140 122 6 3 chr12 50753865 50754177 -93528312 - AluSq SINE Alu 0 313 1 332 205 48 43 chr12 50754575 50754688 -93527801 - MLT1G1 LTR MaLR -1 580 441 309 221 21 21 chr12 50754851 50754962 -93527527 - MLT1I LTR MaLR -266 143 64 2178 121 0 0 chr12 50755019 50755324 -93527165 - AluSx SINE Alu -7 305 1 285 167 0 0 chr12 50755587 50755641 -93526848 + (CAG)n Simple_repeat Simple_repeat 1 54 0 2245 102 16 22 chr12 50755892 50756206 -93526283 + AluSx SINE Alu 1 312 0 225 308 0 10 chr12 50756213 50756317 -93526172 + L1M4b LINE L1 1331 1433 -5426 705 294 90 12 chr12 50756325 50756580 -93525909 + L1M3d LINE L1 5 279 -5612 760 248 12 40 chr12 50756867 50757117 -93525372 - L1MA9 LINE L1 -109 6203 5961 180 0 0 0 chr12 50757213 50757233 -93525256 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1433 249 125 10 chr12 50757233 50757738 -93524751 + L1M3d LINE L1 2142 2704 -3266 2084 91 18 4 chr12 50757749 50758023 -93524466 - AluSg SINE Alu -18 292 15 1757 177 3 17 chr12 50758059 50758353 -93524136 - AluJo SINE Alu -22 290 1 31 44 0 0 chr12 50758363 50758408 -93524081 + AT_rich Low_complexity Low_complexity 1 45 0 540 167 12 0 chr12 50758409 50758493 -93523996 - FLAM_C SINE Alu -26 117 33 1755 112 52 75 chr12 50758536 50758841 -93523648 - AluSx SINE Alu -14 298 1 27 0 0 0 chr12 50758920 50758947 -93523542 + AT_rich Low_complexity Low_complexity 1 27 0 1609 168 40 16 chr12 50759038 50759342 -93523147 + AluJo SINE Alu 1 311 -1 710 179 0 32 chr12 50759572 50759695 -93522794 - FLAM_C SINE Alu -23 120 2 2484 113 31 77 chr12 50759717 50760161 -93522328 - MSTA LTR MaLR -2 426 3 9792 158 30 7 chr12 50760163 50761776 -93520713 - MSTA-int LTR MaLR 0 1651 1 2436 124 89 2 chr12 50761776 50762170 -93520319 - MSTA LTR MaLR 0 428 1 1677 216 70 24 chr12 50762170 50762432 -93520057 - L1M4 LINE L1 -1391 4755 4506 1966 126 14 0 chr12 50762432 50762726 -93519763 - L1PA16 LINE L1 -2 6164 5867 1677 216 70 24 chr12 50762726 50762995 -93519494 - L1M4 LINE L1 -1640 4506 4200 1311 259 57 6 chr12 50762994 50763466 -93519023 - L1M4 LINE L1 -2176 3970 3475 * 2841 114 35 7 chr12 50763484 50763940 -93518549 - L1PA11 LINE L1 -3 6171 5703 366 233 11 11 chr12 50764140 50764230 -93518259 + L1M4 LINE L1 4677 4766 -1380 1647 88 13 0 chr12 50764233 50764460 -93518029 + L1MA1 LINE L1 5777 6006 -296 1987 111 17 7 chr12 50764532 50764829 -93517660 - HUERS-P3b LTR ERV1 -4805 2613 2314 11577 150 15 15 chr12 50764843 50765713 -93516776 - L1PA6 LINE L1 0 7592 6723 185 0 40 0 chr12 50765713 50765738 -93516751 + (TTG)n Simple_repeat Simple_repeat 2 27 0 11577 150 15 15 chr12 50765738 50767662 -93514827 - L1PA6 LINE L1 -869 6723 4818 1374 138 0 0 chr12 50767667 50767890 -93514599 - AluJb SINE Alu 0 312 90 2038 129 3 0 chr12 50767924 50768219 -93514270 - AluSq SINE Alu -6 307 12 11856 191 19 52 chr12 50768230 50770416 -93512073 - L1PA6 LINE L1 -2759 4825 2568 1732 164 10 7 chr12 50770416 50770709 -93511780 - AluSg SINE Alu -16 294 1 11856 191 19 52 chr12 50770709 50771030 -93511459 - L1PA6 LINE L1 -5016 2568 2238 215 61 30 0 chr12 50771030 50771063 -93511426 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 11856 191 19 52 chr12 50771063 50771351 -93511138 - L1PA6 LINE L1 -5346 2238 1942 2155 92 3 30 chr12 50771351 50771656 -93510833 + AluY SINE Alu 2 298 -13 11856 191 19 52 chr12 50771656 50772045 -93510444 - L1PA6 LINE L1 -5642 1942 924 708 285 24 7 chr12 50772044 50772335 -93510154 - L1M4 LINE L1 -2652 3494 3199 * 1255 133 64 5 chr12 50772335 50772538 -93509951 + AluJb SINE Alu 17 231 -81 37670 73 6 9 chr12 50772650 50775793 -93506696 - L1P LINE L1 -1183 4963 1836 10058 69 80 8 chr12 50775793 50777084 -93505405 + SVA Other Other 3 1386 0 37670 73 6 9 chr12 50777084 50778915 -93503574 - L1P LINE L1 -4310 1836 2 10814 119 18 14 chr12 50778915 50780497 -93501992 - HUERS-P3b LTR ERV1 -5067 2351 764 2450 209 17 35 chr12 50780540 50781058 -93501431 - HUERS-P3b LTR ERV1 -6909 509 1 4349 124 3 17 chr12 50781058 50781711 -93500778 - LTR9B LTR ERV1 0 644 1 1242 169 99 29 chr12 50783607 50783879 -93498610 + AluJb SINE Alu 13 303 -9 232 232 0 110 chr12 50785300 50785382 -93497107 + MIR SINE MIR 17 89 -119 2052 141 7 0 chr12 50785402 50785699 -93496790 + AluSx SINE Alu 1 299 -13 203 59 0 29 chr12 50786350 50786384 -93496105 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 253 223 50 6 chr12 50786414 50786505 -93495984 + MIR SINE MIR 99 192 -61 2122 96 65 7 chr12 50788032 50788324 -93494165 + AluSc SINE Alu 1 309 0 1014 191 0 0 chr12 50788381 50788554 -93493935 + FAM SINE Alu 1 173 -2 197 318 30 0 chr12 50788740 50788806 -93493683 + L2 LINE L2 3200 3267 -5 2219 114 7 3 chr12 50788867 50789166 -93493323 + AluSq SINE Alu 1 300 -13 2295 107 0 0 chr12 50789168 50789466 -93493023 + AluSx SINE Alu 1 298 -14 687 131 33 0 chr12 50789885 50790007 -93492482 + L1MA9 LINE L1 6159 6284 -28 1892 111 70 0 chr12 50790183 50790453 -93492036 + AluSq SINE Alu 1 289 -24 542 275 6 12 chr12 50791014 50791181 -93491308 - MIR3 SINE MIR -6 202 37 1970 144 50 0 chr12 50791740 50792038 -93490451 - AluSq SINE Alu 0 313 1 2282 98 3 7 chr12 50794015 50794301 -93488188 + AluSq SINE Alu 1 287 -26 183 100 0 0 chr12 50794301 50794331 -93488158 + (CATA)n Simple_repeat Simple_repeat 2 31 0 2082 125 20 13 chr12 50795284 50795589 -93486900 + AluJb SINE Alu 1 307 -5 2148 115 7 20 chr12 50795970 50796275 -93486214 - AluSx SINE Alu -5 307 7 31 58 0 0 chr12 50797412 50797464 -93485025 + AT_rich Low_complexity Low_complexity 1 52 0 2115 151 0 0 chr12 50797469 50797780 -93484709 + AluSx SINE Alu 1 311 -1 1744 143 38 4 chr12 50797976 50798241 -93484248 + AluJo SINE Alu 9 282 -30 37 69 0 0 chr12 50798770 50798842 -93483647 + AT_rich Low_complexity Low_complexity 1 72 0 652 133 0 0 chr12 50798986 50799091 -93483398 + L1MA1 LINE L1 6198 6302 0 10672 31 1 2 chr12 50799100 50800388 -93482101 - L1PA3 LINE L1 -2669 3477 2191 16557 26 1 0 chr12 50800388 50803071 -93479418 + L1PA3 LINE L1 3470 6152 -3 1923 119 59 0 chr12 50803364 50803650 -93478839 + AluSx SINE Alu 1 303 -9 298 216 112 43 chr12 50803654 50803770 -93478719 - L1MC4 LINE L1 -18 8024 7901 21 0 0 0 chr12 50803788 50803809 -93478680 + AT_rich Low_complexity Low_complexity 1 21 0 485 360 43 5 chr12 50803865 50804259 -93478230 - L1M4 LINE L1 -1556 4590 4182 316 330 0 9 chr12 50804359 50804471 -93478018 + L1MEd LINE L1 457 567 -5552 1622 189 31 14 chr12 50804573 50804859 -93477630 + AluJo SINE Alu 3 293 -19 1363 271 18 12 chr12 50804911 50805240 -93477249 + LTR16A LTR ERVL 120 450 0 428 333 26 0 chr12 50805340 50805496 -93476993 + ERVL LTR ERVL 4746 4905 -859 2240 123 0 7 chr12 50805701 50806003 -93476486 - AluSx SINE Alu -12 300 1 2470 64 0 3 chr12 50806017 50806312 -93476177 - AluY SINE Alu -17 294 1 2137 140 19 35 chr12 50806533 50806714 -93475775 - MER65A LTR ERV1 0 445 263 1954 141 3 10 chr12 50806714 50807013 -93475476 + AluSx SINE Alu 1 297 -15 2137 140 19 35 chr12 50807013 50807203 -93475286 - MER65A LTR ERV1 -182 263 80 713 258 26 73 chr12 50807392 50807722 -93474767 + LTR16A LTR ERVL 56 450 0 1408 178 29 16 chr12 50807995 50808309 -93474180 + L1M4 LINE L1 2795 3112 -3034 353 232 72 0 chr12 50808318 50808443 -93474046 + L1M4 LINE L1 2557 2690 -3456 656 156 57 16 chr12 50808657 50808779 -93473710 + LTR8 LTR ERV1 1 127 -564 1464 177 0 4 chr12 50808866 50809103 -93473386 - AluJb SINE Alu -30 282 47 2237 106 10 0 chr12 50809222 50809515 -93472974 + AluSx SINE Alu 1 296 -16 305 116 23 0 chr12 50809584 50809627 -93472862 - AluJb SINE Alu -256 44 1 * 1813 219 27 75 chr12 50809627 50810177 -93472312 + LTR8 LTR ERV1 138 660 -31 320 211 70 32 chr12 50810472 50810657 -93471832 + L1M4 LINE L1 2977 3168 -2978 1040 343 55 18 chr12 50810686 50811249 -93471240 + L1PA13 LINE L1 788 1371 -6203 234 325 0 0 chr12 50811395 50811478 -93471011 + L1PA13 LINE L1 2100 2182 -5399 2667 32 0 19 chr12 50811753 50812066 -93470423 + AluY SINE Alu 1 307 -4 9362 192 17 32 chr12 50812084 50814656 -93467833 + L1PA13 LINE L1 2234 4843 -2758 2356 107 0 0 chr12 50814656 50814955 -93467534 + AluSx SINE Alu 3 301 -11 9362 192 17 32 chr12 50814955 50816528 -93465961 + L1PA13 LINE L1 4843 7218 -383 2050 152 0 0 chr12 50816528 50816831 -93465658 + AluSx SINE Alu 1 303 -9 9362 192 17 32 chr12 50816831 50817208 -93465281 + L1PA13 LINE L1 7218 7599 -2 903 135 228 148 chr12 50817270 50817573 -93464916 + MER21B LTR ERV1 22 348 -515 4276 57 47 20 chr12 50817575 50818170 -93464319 + MER4E LTR ERV1 1 611 -155 1384 175 0 0 chr12 50818305 50818516 -93463973 + AluJb SINE Alu 1 211 -101 487 92 0 0 chr12 50818519 50818584 -93463905 - AluSq/x SINE Alu -180 133 69 1372 139 5 0 chr12 50818584 50818786 -93463703 - AluSx SINE Alu -109 203 1 2484 136 10 60 chr12 50818786 50819006 -93463483 + L1PA12 LINE L1 5662 5891 -273 3223 81 0 58 chr12 50819006 50819475 -93463014 - MLT2A1 LTR ERVL -2 442 1 2484 136 10 60 chr12 50819475 50819579 -93462910 + L1PA12 LINE L1 5891 5999 -165 516 105 53 11 chr12 50819579 50819672 -93462817 + L1PA13 LINE L1 6065 6163 0 2484 136 10 60 chr12 50819672 50819893 -93462596 + L1PA12 LINE L1 5999 6155 -9 2080 213 23 21 chr12 50820778 50821236 -93461253 - LTR10B LTR ERV1 0 547 1 10082 221 7 11 chr12 50821237 50823229 -93459260 - LTR10B-int LTR ERV1 -1 6648 4666 6214 213 96 95 chr12 50823241 50825938 -93456551 - HERVI LTR ERV1 -3963 2686 1 1356 254 88 55 chr12 50826062 50826942 -93455547 - L1ME3A LINE L1 -207 5963 5114 2044 134 3 3 chr12 50826942 50827232 -93455257 - AluSg SINE Alu -20 290 1 1940 115 0 0 chr12 50827234 50827494 -93454995 - AluSg SINE Alu -14 296 37 1356 254 88 55 chr12 50827494 50827514 -93454975 - L1ME3A LINE L1 -1056 5114 5096 1688 201 0 0 chr12 50827514 50827813 -93454676 - AluJb SINE Alu -13 299 1 1356 254 88 55 chr12 50827813 50828048 -93454441 - L1ME3A LINE L1 -1074 5096 4802 1362 155 39 0 chr12 50829277 50829509 -93452980 - LTR45 LTR ERV1 -284 241 1 * 1842 168 128 114 chr12 50829509 50829760 -93452729 - MER21B LTR ERV1 -276 587 341 5779 50 32 17 chr12 50829760 50830515 -93451974 - MER4E LTR ERV1 0 766 1 1842 168 128 114 chr12 50830515 50830821 -93451668 - MER21B LTR ERV1 -522 341 22 498 298 58 37 chr12 50830884 50831260 -93451229 - L1ME3A LINE L1 -2310 3836 3453 2037 155 0 0 chr12 50831260 50831563 -93450926 - AluSx SINE Alu -9 303 1 1408 197 15 42 chr12 50831567 50831897 -93450592 - L1PA13 LINE L1 -2 6161 5841 26 0 0 0 chr12 50832056 50832082 -93450407 + GC_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 50832116 50832137 -93450352 + GC_rich Low_complexity Low_complexity 1 21 0 422 202 101 0 chr12 50832411 50832510 -93449979 + MER63 DNA MER1_type 954 1062 0 2042 101 49 0 chr12 50832602 50832888 -93449601 + AluSx SINE Alu 5 304 -8 322 353 82 5 chr12 50832889 50833073 -93449416 - MIR SINE MIR -18 244 47 1883 158 14 3 chr12 50833627 50833919 -93448570 + AluJo SINE Alu 1 295 -17 227 269 0 45 chr12 50833969 50834036 -93448453 - L2 LINE L2 -6 3266 3203 2735 42 0 0 chr12 50834284 50834592 -93447897 + AluY SINE Alu 1 308 -3 232 185 31 62 chr12 50834823 50834888 -93447601 + L2 LINE L2 3251 3313 0 2342 90 0 13 chr12 50834978 50835111 -93447378 + AluSc SINE Alu 2 135 -174 2465 91 0 0 chr12 50835111 50835418 -93447071 + AluSg SINE Alu 1 307 -3 2342 90 0 13 chr12 50835418 50835585 -93446904 + AluSc SINE Alu 135 298 -11 616 250 88 54 chr12 50836374 50836513 -93445976 - MIR SINE MIR -1 261 109 2300 97 0 26 chr12 50836513 50836821 -93445668 + AluSq SINE Alu 1 300 -13 616 250 88 54 chr12 50836821 50836921 -93445568 - MIR SINE MIR -153 109 14 2380 78 3 0 chr12 50837068 50837364 -93445125 + AluY SINE Alu 1 297 -14 2101 135 7 0 chr12 50837724 50838027 -93444462 + AluSx SINE Alu 1 305 -7 2482 80 0 0 chr12 50838345 50838644 -93443845 + AluSq SINE Alu 1 299 -14 1050 97 0 102 chr12 50838717 50838893 -93443596 + AluSp SINE Alu 137 294 -19 2215 113 3 0 chr12 50838930 50839232 -93443257 - AluSx SINE Alu -9 303 1 957 265 64 0 chr12 50839269 50839488 -93443001 + Tigger7 DNA MER2_type 2 234 -2253 433 202 0 83 chr12 50839494 50839603 -93442886 + Tigger7 DNA MER2_type 2388 2487 0 2160 107 7 13 chr12 50839619 50839929 -93442560 - AluSx SINE Alu -4 308 1 350 182 142 61 chr12 50839938 50839963 -93442526 - HAL1 LINE L1 -186 2321 2299 1576 172 23 43 chr12 50839963 50840266 -93442223 - AluJo SINE Alu -15 297 1 350 182 142 61 chr12 50840266 50840388 -93442101 - HAL1 LINE L1 -208 2299 2162 1793 174 51 6 chr12 50840388 50840575 -93441914 + MLT1E2 LTR MaLR 4 181 -445 2428 65 3 13 chr12 50840575 50840882 -93441607 + AluY SINE Alu 1 304 -7 1793 174 51 6 chr12 50840882 50841179 -93441310 + MLT1E2 LTR MaLR 181 574 -52 1926 119 83 0 chr12 50841181 50841458 -93441031 + AluSq SINE Alu 1 300 -13 2009 114 52 0 chr12 50841471 50841743 -93440746 + AluSx SINE Alu 1 286 -26 26 50 0 0 chr12 50841743 50841783 -93440706 + AT_rich Low_complexity Low_complexity 1 40 0 309 115 58 0 chr12 50841785 50841837 -93440652 + MLT1E2 LTR MaLR 568 622 -2 1765 220 136 85 chr12 50841842 50841987 -93440502 - HAL1 LINE L1 -341 2166 2030 1915 134 0 33 chr12 50841987 50842294 -93440195 + AluJb SINE Alu 11 307 -5 1765 220 136 85 chr12 50842294 50842809 -93439680 - HAL1 LINE L1 -477 2030 1543 1960 152 0 3 chr12 50842809 50843106 -93439383 - AluJo SINE Alu -16 296 1 1765 220 136 85 chr12 50843106 50843253 -93439236 - HAL1 LINE L1 -964 1543 1405 2163 114 3 13 chr12 50843253 50843569 -93438920 - AluSq SINE Alu 0 313 1 1765 220 136 85 chr12 50843569 50843690 -93438799 - HAL1 LINE L1 -1102 1405 1292 1914 149 0 7 chr12 50843690 50843979 -93438510 - AluJo SINE Alu -25 287 1 1765 220 136 85 chr12 50843979 50844052 -93438437 - HAL1 LINE L1 -1215 1292 1110 1322 238 96 22 chr12 50844053 50844377 -93438112 - MLT1F1 LTR MaLR 0 567 220 1372 80 0 0 chr12 50844377 50844553 -93437936 - AluY SINE Alu 0 311 136 1029 196 77 5 chr12 50844555 50844764 -93437725 - MLT1F1 LTR MaLR -343 224 1 564 271 135 38 chr12 50844823 50845170 -93437319 - HAL1 LINE L1 -1410 1097 717 2009 148 125 31 chr12 50845322 50845713 -93436776 - MSTA LTR MaLR 0 428 1 180 0 0 0 chr12 50845933 50845953 -93436536 + (ATG)n Simple_repeat Simple_repeat 1 20 0 760 236 87 24 chr12 50846009 50846344 -93436145 - L1MD3 LINE L1 -1 8028 7698 1060 198 0 5 chr12 50846348 50846545 -93435944 - AluJo SINE Alu -13 299 104 * 1357 159 0 0 chr12 50846544 50846758 -93435731 + AluSg/x SINE Alu 86 299 -13 254 118 0 0 chr12 50846758 50846792 -93435697 - AluJo SINE Alu -186 116 83 1679 201 71 28 chr12 50846794 50846924 -93435565 - L1MC4 LINE L1 -207 7601 7478 1921 114 82 0 chr12 50846924 50847205 -93435284 - AluSp SINE Alu -9 304 1 1679 201 71 28 chr12 50847205 50847499 -93434990 - L1MC4 LINE L1 -330 7478 7198 1873 152 24 7 chr12 50847499 50847796 -93434693 - AluJb SINE Alu -10 302 1 1679 201 71 28 chr12 50847796 50847817 -93434672 - L1MC4 LINE L1 -610 7198 7179 675 75 28 0 chr12 50847817 50847924 -93434565 + (TA)n Simple_repeat Simple_repeat 1 110 0 1679 201 71 28 chr12 50847924 50847958 -93434531 - L1MC4 LINE L1 -629 7179 7126 1842 221 60 17 chr12 50847987 50848466 -93434023 - L1MCb LINE L1 -5159 886 387 1220 219 53 50 chr12 50848462 50848823 -93433666 - L1MCb LINE L1 -6042 522 161 * 1408 170 30 75 chr12 50848830 50849072 -93433417 - MER63 DNA MER1_type -228 833 609 2047 139 3 0 chr12 50849072 50849367 -93433122 + AluSx SINE Alu 1 296 -16 1408 170 30 75 chr12 50849367 50849459 -93433030 - MER63 DNA MER1_type -452 609 514 764 192 0 0 chr12 50849459 50849584 -93432905 + FLAM_A SINE Alu 4 128 -5 253 179 0 0 chr12 50849585 50849624 -93432865 + MER4D LTR ERV1 760 798 -74 29 0 0 0 chr12 50849624 50849653 -93432836 + AT_rich Low_complexity Low_complexity 1 29 0 2208 110 10 0 chr12 50849662 50849961 -93432528 + AluSp SINE Alu 1 302 -11 2051 114 74 40 chr12 50850297 50850649 -93431840 + THE1B LTR MaLR 1 364 0 11625 86 21 3 chr12 50850649 50852201 -93430288 + THE1B-int LTR MaLR 1 1580 0 2497 101 5 37 chr12 50852201 50852577 -93429912 + THE1B LTR MaLR 1 364 0 185 316 95 21 chr12 50852693 50852788 -93429701 + MIR SINE MIR 53 154 -108 327 253 163 24 chr12 50853250 50853416 -93429073 - MIR SINE MIR -16 246 58 2511 73 0 0 chr12 50853421 50853723 -93428766 - AluSx SINE Alu -9 303 2 231 250 87 0 chr12 50853852 50853944 -93428545 + MIR SINE MIR 160 259 -3 270 250 0 0 chr12 50854024 50854088 -93428401 - L1ME LINE L1 -590 5574 5511 2371 55 7 26 chr12 50854180 50854488 -93428001 - AluSg SINE Alu -8 302 1 2347 78 0 13 chr12 50855870 50856179 -93426310 + AluSq SINE Alu 1 305 -8 1841 141 0 0 chr12 50856520 50856790 -93425699 + AluSx SINE Alu 1 270 -42 240 278 0 83 chr12 50856864 50856972 -93425517 - L2 LINE L2 -1 3271 3173 1636 166 6 64 chr12 50857425 50857739 -93424750 + AluJb SINE Alu 1 296 -16 1347 211 14 11 chr12 50857850 50858129 -93424360 - AluJo SINE Alu -31 281 2 523 191 79 16 chr12 50858541 50858667 -93423822 - MER33 DNA MER1_type -189 135 2 2295 86 0 0 chr12 50858847 50859138 -93423351 + AluSx SINE Alu 1 291 -21 2505 77 6 0 chr12 50859138 50859449 -93423040 + AluSp SINE Alu 1 313 0 1382 94 0 0 chr12 50859646 50859826 -93422663 + AluSg/x SINE Alu 129 308 -4 2539 71 0 0 chr12 50860696 50861006 -93421483 - AluY SINE Alu -1 310 1 2441 64 7 0 chr12 50862073 50862368 -93420121 - AluSp SINE Alu -16 297 1 313 296 154 19 chr12 50862473 50862635 -93419854 + MER5A DNA MER1_type 2 185 -4 372 292 117 0 chr12 50862686 50862806 -93419683 + L2 LINE L2 3180 3313 0 21 0 0 0 chr12 50862908 50862929 -93419560 + AT_rich Low_complexity Low_complexity 1 21 0 237 65 0 0 chr12 50863158 50863189 -93419300 + (TA)n Simple_repeat Simple_repeat 1 31 0 2213 91 3 20 chr12 50863190 50863486 -93419003 - AluY SINE Alu 0 311 21 216 0 0 0 chr12 50863486 50863510 -93418979 + (TA)n Simple_repeat Simple_repeat 2 25 0 1918 116 11 7 chr12 50863510 50863787 -93418702 - AluSg SINE Alu -18 292 15 1669 193 0 17 chr12 50863823 50864113 -93418376 - AluJo SINE Alu -22 290 6 1782 245 35 18 chr12 50864129 50864441 -93418048 + L1M4 LINE L1 2877 3182 -2964 1664 159 35 4 chr12 50864441 50864698 -93417791 - AluJb SINE Alu -27 285 21 1782 245 35 18 chr12 50864698 50864993 -93417496 + L1M4 LINE L1 3182 3494 -2652 1340 260 28 23 chr12 50864992 50865381 -93417108 + L1PA12 LINE L1 654 1044 -6537 * 2111 131 0 0 chr12 50865382 50865679 -93416810 - AluSg SINE Alu -13 297 1 2076 104 3 17 chr12 50865698 50865997 -93416492 - AluSg SINE Alu -15 295 1 870 133 0 16 chr12 50866150 50866278 -93416211 - FLAM_C SINE Alu -6 127 2 732 305 63 43 chr12 50866562 50866587 -93415902 - L1ME4a LINE L1 -3 6118 6095 2179 112 10 13 chr12 50866587 50866891 -93415598 + AluSx SINE Alu 1 303 -9 732 305 63 43 chr12 50866891 50867488 -93415001 - L1ME4a LINE L1 -26 6095 5484 296 127 91 0 chr12 50867513 50867568 -93414921 - Alu SINE Alu -8 294 235 1241 159 128 35 chr12 50867698 50867955 -93414534 - AluJo SINE Alu -31 281 1 254 272 12 0 chr12 50868059 50868140 -93414349 - L1ME4a LINE L1 -107 6014 5933 2341 99 0 0 chr12 50868212 50868514 -93413975 - AluSx SINE Alu -10 302 1 31 44 0 0 chr12 50868524 50868569 -93413920 + AT_rich Low_complexity Low_complexity 1 45 0 574 167 12 0 chr12 50868570 50868654 -93413835 - FLAM_C SINE Alu -26 117 33 1735 112 52 75 chr12 50868697 50869002 -93413487 - AluSx SINE Alu -14 298 1 27 0 0 0 chr12 50869081 50869108 -93413381 + AT_rich Low_complexity Low_complexity 1 27 0 1604 168 40 16 chr12 50869199 50869503 -93412986 + AluJo SINE Alu 1 311 -1 795 139 8 33 chr12 50869733 50869855 -93412634 - FLAM_C SINE Alu -23 120 2 21 36 0 0 chr12 50869856 50869884 -93412605 + AT_rich Low_complexity Low_complexity 1 28 0 1349 167 30 0 chr12 50870318 50870551 -93411938 - L1MB7 LINE L1 -19 6165 5926 841 156 0 57 chr12 50871203 50871344 -93411145 + AluJo/FLAM SINE Alu 1 133 -169 1459 181 50 11 chr12 50871347 50871474 -93411015 + AluJb SINE Alu 1 122 -190 207 0 0 0 chr12 50871474 50871497 -93410992 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1459 181 50 11 chr12 50871497 50871650 -93410839 + AluJb SINE Alu 122 292 -20 3282 118 2 45 chr12 50871748 50871961 -93410528 - MER1A DNA MER1_type -2173 529 308 2287 90 0 3 chr12 50871961 50872250 -93410239 - AluSc SINE Alu -21 288 1 3282 118 2 45 chr12 50872250 50872551 -93409938 - MER1A DNA MER1_type -2394 308 37 1895 124 38 3 chr12 50872835 50873125 -93409364 - AluJb SINE Alu -12 300 1 2219 107 3 10 chr12 50873179 50873487 -93409002 - AluSp SINE Alu -7 306 1 389 167 0 0 chr12 50873490 50873550 -93408939 - Alu SINE Alu -8 292 233 800 65 0 0 chr12 50873552 50873645 -93408844 - AluSc SINE Alu -215 94 2 769 55 0 0 chr12 50873647 50873738 -93408751 - MER1A DNA MER1_type -196 333 243 1039 212 5 10 chr12 50873738 50873941 -93408548 - AluJb SINE Alu -110 202 1 1443 97 11 126 chr12 50873944 50874213 -93408276 - AluSg1 SINE Alu -12 297 60 2539 71 0 0 chr12 50875205 50875515 -93406974 - AluY SINE Alu -1 310 1 2441 64 7 0 chr12 50876582 50876877 -93405612 - AluSp SINE Alu -16 297 1 289 303 154 19 chr12 50876982 50877144 -93405345 + MER5A DNA MER1_type 2 185 -4 372 292 117 0 chr12 50877195 50877315 -93405174 + L2 LINE L2 3180 3313 0 21 0 0 0 chr12 50877416 50877437 -93405052 + AT_rich Low_complexity Low_complexity 1 21 0 237 65 0 0 chr12 50877666 50877697 -93404792 + (TA)n Simple_repeat Simple_repeat 1 31 0 1988 104 4 21 chr12 50877698 50877978 -93404511 - AluY SINE Alu 0 311 37 1675 204 0 0 chr12 50877998 50878297 -93404192 - AluJb SINE Alu -13 299 1 619 251 89 41 chr12 50878325 50878719 -93403770 - L1M4 LINE L1 -1134 5012 4600 2089 114 0 0 chr12 50878720 50878991 -93403498 + AluSg SINE Alu 2 272 -38 1847 167 0 20 chr12 50878995 50879294 -93403195 - AluSx SINE Alu -17 295 3 1645 156 29 11 chr12 50879296 50879571 -93402918 + AluJo SINE Alu 28 307 -5 24 32 0 0 chr12 50880081 50880112 -93402377 + AT_rich Low_complexity Low_complexity 1 31 0 1936 120 7 37 chr12 50880261 50880561 -93401928 - AluSx SINE Alu -21 291 1 282 93 13 40 chr12 50880637 50880712 -93401777 + (TTTTA)n Simple_repeat Simple_repeat 3 75 0 1880 118 0 7 chr12 50880718 50880988 -93401501 - AluSx SINE Alu -1 311 44 2040 128 20 13 chr12 50881225 50881530 -93400959 + AluJb SINE Alu 1 307 -5 2072 127 7 19 chr12 50881901 50882209 -93400280 - AluSx SINE Alu -2 310 7 31 58 0 0 chr12 50883347 50883399 -93399090 + AT_rich Low_complexity Low_complexity 1 52 0 2104 151 0 0 chr12 50883404 50883715 -93398774 + AluSx SINE Alu 1 311 -1 1706 147 38 4 chr12 50883911 50884176 -93398313 + AluJo SINE Alu 9 282 -30 37 69 0 0 chr12 50884705 50884777 -93397712 + AT_rich Low_complexity Low_complexity 1 72 0 682 133 0 0 chr12 50884921 50885026 -93397463 + L1MA1 LINE L1 6198 6302 0 310 53 0 0 chr12 50885035 50885073 -93397416 - L1P LINE L1 -2669 3477 3440 243 0 0 0 chr12 50885733 50885760 -93396729 + (T)n Simple_repeat Simple_repeat 1 27 0 2208 113 3 3 chr12 50886875 50887200 -93395289 + AluSx SINE Alu 1 312 0 215 204 0 0 chr12 50889596 50889640 -93392849 + (TG)n Simple_repeat Simple_repeat 2 45 0 2337 93 0 7 chr12 50893585 50893886 -93388603 - AluSx SINE Alu -13 299 1 1441 168 29 15 chr12 50894692 50894966 -93387523 + AluJo SINE Alu 29 306 -6 2343 228 149 84 chr12 50894966 50895083 -93387406 - L2 LINE L2 -35 3278 3170 1511 157 61 14 chr12 50895083 50895363 -93387126 - AluJo SINE Alu -19 293 1 2343 228 149 84 chr12 50895363 50895963 -93386526 - L2 LINE L2 -143 3170 2610 2342 97 3 0 chr12 50895963 50896261 -93386228 - AluSq SINE Alu -14 299 1 2343 228 149 84 chr12 50896261 50896811 -93385678 - L2 LINE L2 -703 2610 1893 2157 112 14 0 chr12 50896811 50897107 -93385382 - AluSx SINE Alu -12 300 1 359 72 10 3 chr12 50897236 50897298 -93385191 + Alu SINE Alu 249 297 -5 2106 99 0 38 chr12 50897387 50897701 -93384788 + AluSg SINE Alu 1 302 -8 337 144 367 0 chr12 50898062 50898152 -93384337 + L2 LINE L2 3191 3313 0 25 0 0 0 chr12 50898207 50898232 -93384257 + AT_rich Low_complexity Low_complexity 1 25 0 369 0 0 0 chr12 50898245 50898286 -93384203 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 729 191 0 0 chr12 50898286 50898401 -93384088 - AluJb SINE Alu -196 116 2 221 282 28 14 chr12 50898701 50898772 -93383717 - MIR SINE MIR -116 92 21 437 243 184 38 chr12 50898798 50898983 -93383506 + MIR SINE MIR 41 252 -10 2475 68 3 0 chr12 50899089 50899397 -93383092 - AluSp SINE Alu -4 309 1 218 259 37 0 chr12 50900785 50900839 -93381650 + MIR SINE MIR 92 147 -61 968 96 0 22 chr12 50900863 50900999 -93381490 - FLAM_C SINE Alu 0 133 1 1631 107 29 36 chr12 50901031 50901312 -93381177 - AluSx SINE Alu -33 279 1 841 158 0 0 chr12 50901514 50901647 -93380842 + AluJo/FLAM SINE Alu 1 133 -179 1466 184 26 15 chr12 50901650 50901922 -93380567 + AluJo SINE Alu 2 276 -36 349 189 14 7 chr12 50901922 50901991 -93380498 - AluJ/FLAM SINE Alu -240 62 1 22 23 0 45 chr12 50903377 50903403 -93379086 + AT_rich Low_complexity Low_complexity 1 26 -16 775 112 60 8 chr12 50903403 50903537 -93378952 - L1MA6 LINE L1 -2 6298 6158 22 23 0 45 chr12 50903537 50903554 -93378935 + AT_rich Low_complexity Low_complexity 26 42 0 418 159 0 0 chr12 50903953 50904016 -93378473 - 5S rRNA rRNA -55 66 4 2347 93 0 16 chr12 50904195 50904506 -93377983 - AluSg SINE Alu -4 306 1 21 0 0 0 chr12 50904882 50904903 -93377586 + AT_rich Low_complexity Low_complexity 1 21 0 1737 149 25 51 chr12 50905299 50905336 -93377153 + AluJo SINE Alu 1 37 -275 2186 100 10 0 chr12 50905336 50905625 -93376864 - AluSq SINE Alu -19 294 3 1737 149 25 51 chr12 50905625 50905902 -93376587 + AluJo SINE Alu 37 307 -5 24 32 0 0 chr12 50906412 50906443 -93376046 + AT_rich Low_complexity Low_complexity 1 31 0 1936 120 7 37 chr12 50906592 50906892 -93375597 - AluSx SINE Alu -21 291 1 282 93 13 40 chr12 50906968 50907043 -93375446 + (TTTTA)n Simple_repeat Simple_repeat 3 75 0 1880 118 0 7 chr12 50907049 50907319 -93375170 - AluSx SINE Alu -1 311 44 2116 110 10 3 chr12 50907686 50907977 -93374512 + AluSx SINE Alu 1 293 -19 1727 159 24 17 chr12 50908020 50908310 -93374179 + AluJb SINE Alu 2 293 -19 549 110 0 0 chr12 50908310 50908392 -93374097 + (TA)n Simple_repeat Simple_repeat 2 83 0 4461 119 142 35 chr12 50909003 50909441 -93373048 - Tigger3b DNA MER2_type -1797 1231 841 2160 122 0 28 chr12 50909441 50909762 -93372727 - AluSx SINE Alu 0 312 1 1746 158 21 24 chr12 50909769 50910060 -93372429 - AluJo SINE Alu -22 290 1 4461 119 142 35 chr12 50910060 50910529 -93371960 - Tigger3b DNA MER2_type -2192 836 202 2279 98 3 7 chr12 50910529 50910826 -93371663 - AluSc SINE Alu -13 296 1 4461 119 142 35 chr12 50910826 50910886 -93371603 - Tigger3b DNA MER2_type -2826 202 150 806 204 46 50 chr12 50911032 50911272 -93371217 - L1MC5 LINE L1 -675 7286 7048 1795 148 14 41 chr12 50911273 50911432 -93371057 - MLT1A1 LTR MaLR -3 362 200 1987 87 112 0 chr12 50911432 50911709 -93370780 - AluSg SINE Alu -2 308 1 1795 148 14 41 chr12 50911709 50911893 -93370596 - MLT1A1 LTR MaLR -165 200 28 404 73 0 0 chr12 50911894 50911949 -93370540 + U6 snRNA snRNA 2 56 -51 847 103 8 0 chr12 50912065 50912182 -93370307 + AluY SINE Alu 178 295 -16 400 244 0 0 chr12 50912186 50912272 -93370217 - Tigger3b DNA MER2_type -1144 87 2 1973 108 26 39 chr12 50912636 50912941 -93369548 - AluSg SINE Alu -6 304 4 1677 101 5 0 chr12 50912997 50913214 -93369275 - AluSp SINE Alu -23 290 73 475 244 85 18 chr12 50913261 50913425 -93369064 + MIR3 SINE MIR 19 193 -15 1977 103 45 58 chr12 50914495 50914805 -93367684 - AluSx SINE Alu -6 306 1 1563 187 9 41 chr12 50914805 50914979 -93367510 - AluJo SINE Alu -6 306 145 2318 115 0 6 chr12 50914979 50915293 -93367196 - AluSx SINE Alu 0 312 1 1563 187 9 41 chr12 50915293 50915434 -93367055 - AluJo SINE Alu -167 145 1 1864 169 10 3 chr12 50915472 50915773 -93366716 - AluJb SINE Alu -9 303 1 2160 128 0 3 chr12 50916116 50916421 -93366068 - AluSg SINE Alu -6 304 1 23 33 0 0 chr12 50916498 50916528 -93365961 + AT_rich Low_complexity Low_complexity 1 30 0 952 194 81 28 chr12 50916613 50916824 -93365665 + AluJo SINE Alu 86 307 -5 2317 99 0 10 chr12 50916825 50917127 -93365362 + AluSg1 SINE Alu 4 302 -7 230 128 0 26 chr12 50917136 50917175 -93365314 - Alu SINE Alu -262 38 1 440 255 85 20 chr12 50917181 50917334 -93365155 - Charlie8 DNA MER1_type -2254 163 1 305 278 28 0 chr12 50917411 50917483 -93365006 + L2 LINE L2 3222 3295 -18 261 242 105 83 chr12 50917647 50917889 -93364600 - L1M4 LINE L1 -904 5242 4992 1609 131 30 8 chr12 50917889 50918126 -93364363 - AluSx SINE Alu -28 284 43 261 242 105 83 chr12 50918126 50918160 -93364329 - L1M4 LINE L1 -1154 4992 4960 2318 87 0 26 chr12 50918190 50918502 -93363987 - AluY SINE Alu -7 304 1 416 202 8 23 chr12 50918603 50918732 -93363757 + CT-rich Low_complexity Low_complexity 1 127 0 1900 132 53 4 chr12 50918739 50919039 -93363450 - AluSx SINE Alu 0 312 1 1952 139 27 17 chr12 50919061 50919223 -93363266 - AluSx SINE Alu -8 304 145 2245 106 3 3 chr12 50919223 50919525 -93362964 - AluSp SINE Alu -11 302 1 2288 89 33 3 chr12 50919527 50919831 -93362658 - AluSq SINE Alu 0 313 1 1952 139 27 17 chr12 50919831 50919966 -93362523 - AluSx SINE Alu -167 145 1 1519 164 79 27 chr12 50920083 50920375 -93362114 - AluJb SINE Alu -5 307 1 877 103 7 97 chr12 50920377 50920522 -93361967 - AluJb SINE Alu -178 134 3 2369 92 3 6 chr12 50920575 50920889 -93361600 - AluSp SINE Alu 0 313 1 1097 60 33 13 chr12 50920954 50921104 -93361385 - AluSp SINE Alu -160 153 1 23 0 0 0 chr12 50921430 50921453 -93361036 + AT_rich Low_complexity Low_complexity 1 23 0 571 161 42 8 chr12 50921555 50921673 -93360816 + AluSq/x SINE Alu 7 128 -185 24 53 0 0 chr12 50921842 50921880 -93360609 + GC_rich Low_complexity Low_complexity 1 38 0 266 211 20 66 chr12 50921923 50922075 -93360414 + (CGGGG)n Simple_repeat Simple_repeat 2 146 0 1014 151 0 0 chr12 50922113 50922272 -93360217 - AluSx SINE Alu -152 160 2 1571 186 9 41 chr12 50922272 50922447 -93360042 - AluJo SINE Alu -5 307 145 2318 115 0 6 chr12 50922447 50922761 -93359728 - AluSx SINE Alu 0 312 1 1571 186 9 41 chr12 50922761 50922902 -93359587 - AluJo SINE Alu -167 145 1 1864 169 10 3 chr12 50922940 50923241 -93359248 - AluJb SINE Alu -9 303 1 2160 128 0 3 chr12 50923584 50923889 -93358600 - AluSg SINE Alu -6 304 1 23 33 0 0 chr12 50923966 50923996 -93358493 + AT_rich Low_complexity Low_complexity 1 30 0 952 194 81 28 chr12 50924081 50924292 -93358197 + AluJo SINE Alu 86 307 -5 2308 100 0 10 chr12 50924293 50924594 -93357895 + AluSg1 SINE Alu 4 301 -8 2243 84 10 10 chr12 50924594 50924890 -93357599 + AluY SINE Alu 1 296 -15 2380 93 10 0 chr12 50924955 50925256 -93357233 + AluSx SINE Alu 1 304 -8 1877 189 78 27 chr12 50925293 50925706 -93356783 - Tigger2a DNA MER2_type 0 434 1 32 81 0 0 chr12 50925722 50925796 -93356693 + AT_rich Low_complexity Low_complexity 1 74 0 267 284 11 11 chr12 50925817 50925912 -93356577 + L1ME4a LINE L1 5493 5587 -591 234 252 168 8 chr12 50926189 50926320 -93356169 + L1ME4a LINE L1 5969 6120 -1 21 0 0 0 chr12 50926377 50926398 -93356091 + AT_rich Low_complexity Low_complexity 1 21 0 2223 107 0 0 chr12 50926765 50927054 -93355435 + AluSx SINE Alu 1 289 -23 856 209 141 0 chr12 50927246 50927437 -93355052 + MER20 DNA MER1_type 2 219 0 25 65 0 0 chr12 50927504 50927550 -93354939 + AT_rich Low_complexity Low_complexity 1 46 0 2369 174 27 10 chr12 50929008 50929497 -93352992 - L1MB7 LINE L1 -15 6169 5673 1792 139 3 76 chr12 50929537 50929854 -93352635 - AluJo SINE Alu -18 294 1 1913 164 0 0 chr12 50929867 50930159 -93352330 - AluSx SINE Alu -19 293 2 2257 123 0 3 chr12 50930386 50930696 -93351793 - AluSg SINE Alu -1 309 1 21 0 0 0 chr12 50931072 50931093 -93351396 + AT_rich Low_complexity Low_complexity 1 21 0 1401 92 5 5 chr12 50931526 50931710 -93350779 - AluSq SINE Alu -19 294 111 23 54 0 0 chr12 50931950 50931987 -93350502 + GC_rich Low_complexity Low_complexity 1 37 0 696 115 10 0 chr12 50932474 50932570 -93349919 - AluSg SINE Alu -212 98 2 2056 123 0 0 chr12 50932572 50932841 -93349648 + AluSx SINE Alu 28 296 -16 352 286 130 32 chr12 50932843 50932997 -93349492 + MER102b DNA MER1_type 164 332 -9 811 153 23 15 chr12 50933063 50933194 -93349295 - FLAM_C SINE Alu 0 133 2 1070 247 209 3 chr12 50933864 50934256 -93348233 + L2 LINE L2 1223 1695 -1619 1752 236 66 54 chr12 50934282 50934874 -93347615 + L2 LINE L2 1049 1647 -1667 2414 98 0 0 chr12 50934886 50935183 -93347306 + AluSx SINE Alu 1 297 -15 2247 107 3 23 chr12 50935253 50935563 -93346926 + AluSp SINE Alu 1 304 -9 1533 107 5 0 chr12 50935663 50935868 -93346621 + AluSg/x SINE Alu 101 306 -4 728 210 0 21 chr12 50935870 50936013 -93346476 - FRAM SINE Alu -36 140 1 560 202 48 8 chr12 50936028 50936152 -93346337 - MER90 LTR ERV1 -81 533 405 705 182 23 0 chr12 50936152 50936284 -93346205 + AluSg/x SINE Alu 175 309 0 1204 207 50 28 chr12 50936303 50936626 -93345863 - MER90 LTR ERV1 -245 330 1 2285 99 10 13 chr12 50936942 50937254 -93345235 + AluSx SINE Alu 1 311 -1 1943 131 7 24 chr12 50937363 50937661 -93344828 + AluJb SINE Alu 1 293 -19 2372 96 7 0 chr12 50938083 50938384 -93344105 - AluSx SINE Alu -9 303 1 254 130 65 0 chr12 50938632 50938678 -93343811 + AluSp SINE Alu 123 171 -132 681 110 60 0 chr12 50938678 50938778 -93343711 + AluSg/x SINE Alu 103 208 -102 180 0 0 0 chr12 50938800 50938820 -93343669 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 333 283 89 73 chr12 50938836 50938885 -93343604 + L2 LINE L2 2714 2761 -553 1833 133 10 68 chr12 50938885 50939194 -93343295 - AluJb SINE Alu -21 291 1 1940 141 0 26 chr12 50939194 50939499 -93342990 - AluJo SINE Alu -14 298 1 333 283 89 73 chr12 50939499 50939639 -93342850 + L2 LINE L2 2760 2907 -407 256 292 0 0 chr12 50939640 50939712 -93342777 + MER112 DNA MER1_type 2 73 -187 350 200 156 0 chr12 50939769 50939849 -93342640 + MER112 DNA MER1_type 66 132 -128 2362 84 37 0 chr12 50939849 50940147 -93342342 - AluSc SINE Alu 0 309 1 350 200 156 0 chr12 50940147 50940201 -93342288 + MER112 DNA MER1_type 132 221 -39 579 277 153 59 chr12 50940223 50940577 -93341912 + L2 LINE L2 2927 3313 0 220 319 53 0 chr12 50940580 50940674 -93341815 + MIR3 SINE MIR 91 189 -19 409 203 29 123 chr12 50941046 50941165 -93341324 + MIR SINE MIR 8 114 -148 2318 93 0 3 chr12 50941165 50941456 -93341033 - AluSg SINE Alu -20 290 1 409 203 29 123 chr12 50941456 50941474 -93341015 + MIR SINE MIR 114 132 -130 2190 141 0 13 chr12 50941484 50941797 -93340692 - AluSx SINE Alu -2 310 2 304 274 36 12 chr12 50941987 50942071 -93340418 + MIR SINE MIR 46 131 -131 1904 132 3 20 chr12 50942228 50942524 -93339965 + AluJo SINE Alu 1 291 -21 2103 120 0 27 chr12 50942527 50942828 -93339661 + AluSq SINE Alu 2 294 -19 530 296 37 7 chr12 50944625 50944760 -93337729 - MIR SINE MIR -106 156 18 2066 128 14 7 chr12 50944884 50945180 -93337309 + AluSx SINE Alu 1 298 -14 1280 267 109 14 chr12 50945882 50945902 -93336587 - L2 LINE L2 0 3313 3296 2194 141 3 0 chr12 50945902 50946208 -93336281 - AluSq SINE Alu -6 307 1 1280 267 109 14 chr12 50946208 50946617 -93335872 - L2 LINE L2 -17 3296 2843 1922 69 37 8 chr12 50946635 50946880 -93335609 + AluY SINE Alu 55 306 -5 232 298 0 36 chr12 50947092 50947176 -93335313 + MIR SINE MIR 18 98 -164 281 45 0 23 chr12 50947186 50947230 -93335259 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 256 45 0 45 chr12 50947230 50947274 -93335215 + (TCCC)n Simple_repeat Simple_repeat 2 43 0 1448 203 19 38 chr12 50947276 50947451 -93335038 - AluJo SINE Alu 0 312 144 2365 82 3 0 chr12 50947451 50947743 -93334746 - AluSg SINE Alu -17 293 1 1448 203 19 38 chr12 50947743 50947883 -93334606 - AluJo SINE Alu -168 144 3 291 289 10 0 chr12 50947885 50947982 -93334507 + MIR SINE MIR 91 188 -74 375 274 32 0 chr12 50949793 50949888 -93332601 + MIR SINE MIR 81 178 -84 2502 71 3 10 chr12 50950317 50950625 -93331864 - AluSc SINE Alu -3 306 1 432 287 83 6 chr12 50951620 50951777 -93330712 - MIR3 SINE MIR -24 184 16 743 233 48 56 chr12 50952168 50952354 -93330135 + MIR SINE MIR 2 187 -75 2271 82 9 38 chr12 50952354 50952671 -93329818 + AluSx SINE Alu 1 308 -4 743 233 48 56 chr12 50952671 50952733 -93329756 + MIR SINE MIR 187 248 -14 406 267 153 8 chr12 50952780 50952911 -93329578 - MIR3 SINE MIR -18 190 41 377 211 63 32 chr12 50957126 50957221 -93325268 - L2 LINE L2 -32 3240 3143 225 316 0 0 chr12 50958314 50958371 -93324118 - MIR SINE MIR -116 92 36 726 289 34 5 chr12 50958479 50958683 -93323806 + MIR SINE MIR 48 257 -5 584 215 220 10 chr12 50958611 50958803 -93323686 - MIR SINE MIR -1 261 31 * 246 206 15 73 chr12 50958805 50958873 -93323616 + MIR SINE MIR 187 250 -12 502 208 19 0 chr12 50960937 50961043 -93321446 - MIR SINE MIR -108 154 47 705 283 42 17 chr12 50961126 50961296 -93321193 + MIR SINE MIR 13 192 -70 2095 111 0 41 chr12 50961296 50961438 -93321051 + AluSg SINE Alu 2 148 -162 2368 62 3 13 chr12 50961438 50961744 -93320745 + AluY SINE Alu 1 303 -8 2095 111 0 41 chr12 50961744 50961917 -93320572 + AluSg SINE Alu 148 304 -6 705 283 42 17 chr12 50961917 50961986 -93320503 + MIR SINE MIR 192 258 -4 197 50 0 75 chr12 50962044 50962084 -93320405 + (T)n Simple_repeat Simple_repeat 1 37 0 368 59 13 2 chr12 50962187 50962243 -93320246 + AluSp/q SINE Alu 243 293 -10 2118 115 10 0 chr12 50962246 50962551 -93319938 - AluSx SINE Alu -4 308 1 285 29 0 0 chr12 50963024 50963058 -93319431 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1845 143 3 3 chr12 50963063 50963349 -93319140 - AluJb SINE Alu -21 291 6 226 170 21 0 chr12 50963349 50963396 -93319093 - L1MB8 LINE L1 -33 6145 6098 * 890 170 14 30 chr12 50963372 50963588 -93318901 - L1MB8 LINE L1 -163 6015 5827 2041 96 4 4 chr12 50963605 50963926 -93318563 - AluSx SINE Alu 0 321 1 804 174 0 14 chr12 50963971 50964109 -93318380 - AluJo SINE Alu -176 136 1 180 0 0 0 chr12 50964183 50964203 -93318286 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2049 113 0 0 chr12 50964209 50964523 -93317966 + AluSp SINE Alu 1 314 0 510 299 26 7 chr12 50964540 50964694 -93317795 - MIR3 SINE MIR -49 159 3 2251 106 0 0 chr12 50965119 50965422 -93317067 + AluSg SINE Alu 1 303 -7 2054 125 0 0 chr12 50966059 50966356 -93316133 + AluSx SINE Alu 5 301 -11 2351 93 0 0 chr12 50966598 50966900 -93315589 + AluSx SINE Alu 1 302 -10 2289 64 3 0 chr12 50967330 50967668 -93314821 + AluSp SINE Alu 1 339 0 841 115 0 83 chr12 50967763 50967919 -93314570 + FLAM_C SINE Alu 1 143 0 180 0 0 0 chr12 50967967 50967987 -93314502 + (CA)n Simple_repeat Simple_repeat 2 21 0 208 239 0 0 chr12 50968600 50968646 -93313843 + (CCTG)n Simple_repeat Simple_repeat 2 47 0 396 167 0 0 chr12 50969784 50969856 -93312633 + (CA)n Simple_repeat Simple_repeat 2 73 0 394 269 55 28 chr12 50972302 50972447 -93310042 - MIR3 SINE MIR -57 151 3 1749 126 7 52 chr12 50973537 50973847 -93308642 + AluJo SINE Alu 1 296 -16 2046 129 3 7 chr12 50973859 50974162 -93308327 + AluSx SINE Alu 3 304 -8 1201 113 0 6 chr12 50974162 50974330 -93308159 + AluSx SINE Alu 1 167 -145 1312 197 15 8 chr12 50974376 50974635 -93307854 - AluJb SINE Alu -51 261 1 1240 79 0 6 chr12 50974701 50974866 -93307623 - AluSq SINE Alu -32 281 118 1232 54 18 6 chr12 50974966 50975132 -93307357 + AluY SINE Alu 144 311 0 796 248 137 19 chr12 50975184 50975454 -93307035 - AluJo SINE Alu 0 302 1 514 158 11 32 chr12 50975455 50975550 -93306939 - FLAM_A SINE Alu -49 93 1 215 205 218 39 chr12 50975551 50975629 -93306860 - MER5B DNA MER1_type -72 106 15 186 43 0 0 chr12 50975673 50975696 -93306793 + (A)n Simple_repeat Simple_repeat 1 23 0 824 153 0 8 chr12 50977004 50977135 -93305354 - FLAM_C SINE Alu 0 133 4 1087 181 62 19 chr12 50977323 50977533 -93304956 - MER20 DNA MER1_type 0 219 1 2073 93 4 0 chr12 50977840 50978143 -93304346 + AluSg SINE Alu 1 304 0 532 279 63 16 chr12 50978153 50978222 -93304267 - MIR SINE MIR -13 249 185 799 233 37 74 chr12 50978222 50978274 -93304215 - MIR SINE MIR -1 261 209 1665 131 36 49 chr12 50978274 50978579 -93303910 - AluJb SINE Alu -11 301 1 799 233 37 74 chr12 50978579 50978643 -93303846 - MIR SINE MIR -53 209 144 1879 94 73 0 chr12 50978643 50978797 -93303692 - AluSp SINE Alu -18 295 154 210 37 0 0 chr12 50978797 50978824 -93303665 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1879 94 73 0 chr12 50978824 50978944 -93303545 - AluSp SINE Alu -159 154 1 799 233 37 74 chr12 50978944 50979097 -93303392 - MIR SINE MIR -118 144 1 532 279 63 16 chr12 50979097 50979217 -93303272 - MIR SINE MIR -77 185 51 1626 181 17 0 chr12 50979347 50979639 -93302850 + AluJo SINE Alu 6 302 -10 2237 110 0 0 chr12 50979639 50979947 -93302542 + AluSc SINE Alu 1 309 0 952 199 5 0 chr12 50980221 50980407 -93302082 - AluJb SINE Alu 0 312 126 394 310 70 41 chr12 50980408 50980579 -93301910 + MIR SINE MIR 81 256 -6 342 45 0 0 chr12 50981072 50981116 -93301373 + (CAA)n Simple_repeat Simple_repeat 2 45 0 387 284 18 59 chr12 50981267 50981436 -93301053 + MER20B DNA MER1_type 18 179 -604 245 361 49 58 chr12 50982291 50982578 -93299911 + L2 LINE L2 2866 3149 -123 2301 93 0 3 chr12 50982578 50982891 -93299598 - AluSx SINE Alu 0 312 1 245 361 49 58 chr12 50982891 50983013 -93299476 + L2 LINE L2 3149 3271 -1 2220 317 87 17 chr12 50983106 50984147 -93298342 + L2 LINE L2 1751 2864 -450 446 221 0 23 chr12 50984312 50984398 -93298091 - AluS SINE Alu -229 84 1 1973 114 17 13 chr12 50984400 50984699 -93297790 - AluSg SINE Alu -10 300 1 803 135 0 38 chr12 50984733 50984866 -93297623 - FLAM_C SINE Alu -5 128 1 1072 166 0 5 chr12 50984994 50985181 -93297308 + AluJb SINE Alu 120 305 -7 574 281 172 20 chr12 50985228 50985432 -93297057 + L2 LINE L2 2966 3138 -175 2273 57 0 3 chr12 50985432 50985756 -93296733 - AluY SINE Alu 0 324 2 574 281 172 20 chr12 50985756 50985852 -93296637 + L2 LINE L2 3138 3313 0 1635 169 51 3 chr12 50985918 50986213 -93296276 - AluJb SINE Alu -3 309 1 2162 107 7 0 chr12 50986225 50986525 -93295964 - AluSc SINE Alu -7 302 1 300 207 126 18 chr12 50987043 50987154 -93295335 - L1MD2 LINE L1 -10 6349 6227 692 142 22 2 chr12 50987497 50987730 -93294759 + AluJo SINE Alu 1 278 -34 740 242 107 5 chr12 50987747 50987962 -93294527 + MIR SINE MIR 6 242 -20 2124 79 10 30 chr12 50988284 50988589 -93293900 - AluY SINE Alu -12 299 1 2154 102 7 0 chr12 50988589 50988884 -93293605 - AluSp SINE Alu -11 302 6 1023 68 0 8 chr12 50988988 50989121 -93293368 + AluY SINE Alu 1 132 -179 2158 117 0 0 chr12 50989181 50989481 -93293008 + AluSx SINE Alu 1 300 -12 2495 62 3 0 chr12 50989913 50990222 -93292267 + AluY SINE Alu 2 311 0 858 171 30 6 chr12 50990268 50990432 -93292057 - AluJb SINE Alu 0 312 145 8178 31 3 262 chr12 50990441 50992300 -93290189 - SVA Other Other 0 1386 9 1220 116 6 0 chr12 50992345 50992518 -93289971 - AluSp SINE Alu -23 290 117 2206 113 0 0 chr12 50992743 50993045 -93289444 + AluSx SINE Alu 1 302 -10 1064 128 0 0 chr12 50993059 50993207 -93289282 - AluSq/x SINE Alu -164 148 1 1655 171 90 35 chr12 50993772 50994012 -93288477 - MLT1B LTR MaLR -3 387 121 2032 127 3 3 chr12 50994012 50994320 -93288169 - AluJb SINE Alu -4 308 1 1655 171 90 35 chr12 50994320 50994423 -93288066 - MLT1B LTR MaLR -269 121 25 378 193 0 0 chr12 50994423 50994480 -93288009 + AluJo SINE Alu 2 58 -244 1135 154 70 98 chr12 50994582 50994693 -93287796 + AluJo SINE Alu 35 148 -164 2114 71 39 3 chr12 50994693 50994814 -93287675 + AluY SINE Alu 1 116 -195 522 0 0 0 chr12 50994814 50994872 -93287617 + (CA)n Simple_repeat Simple_repeat 2 59 0 2114 71 39 3 chr12 50994872 50995033 -93287456 + AluY SINE Alu 116 293 -18 2172 105 0 0 chr12 50995035 50995340 -93287149 + AluSq SINE Alu 1 305 -8 2363 78 0 0 chr12 50995350 50995656 -93286833 + AluSp SINE Alu 1 306 -7 1135 154 70 98 chr12 50995656 50995816 -93286673 + AluJo SINE Alu 158 312 0 230 216 27 27 chr12 50996762 50996836 -93285653 + (CCCTG)n Simple_repeat Simple_repeat 3 76 0 2087 127 0 0 chr12 50997648 50997947 -93284542 - AluSx SINE Alu -13 299 1 186 43 0 0 chr12 50997947 50997970 -93284519 + (T)n Simple_repeat Simple_repeat 1 23 0 852 131 12 1 chr12 50998019 50998184 -93284305 + L1MA8 LINE L1 5573 5736 -444 1054 165 6 17 chr12 50998184 50998381 -93284108 + FAM SINE Alu 1 60 0 2144 103 27 0 chr12 50998381 50998681 -93283808 + AluSg SINE Alu 1 308 -2 3422 119 17 41 chr12 50998688 50998893 -93283596 + L1MA8 LINE L1 5715 5923 -368 2147 113 7 0 chr12 50998893 50999186 -93283303 - AluSg SINE Alu -15 295 1 3422 119 17 41 chr12 50999186 50999569 -93282920 + L1MA8 LINE L1 5923 6289 -2 2221 91 3 3 chr12 50999622 50999930 -93282559 + AluSg SINE Alu 1 308 -2 1929 209 159 23 chr12 51000111 51000633 -93281856 + MLT1E LTR MaLR 1 593 0 265 317 30 20 chr12 51000633 51000734 -93281755 - MIR SINE MIR -70 192 91 250 308 59 30 chr12 51000738 51000907 -93281582 - LTR67 LTR ERVL -2 555 382 343 191 0 15 chr12 51001759 51001827 -93280662 + L2 LINE L2 3240 3306 -7 1313 284 54 11 chr12 51001887 51002487 -93280002 + L2 LINE L2 2520 3144 -169 1982 115 42 0 chr12 51002500 51002786 -93279703 - AluSg SINE Alu -12 298 1 1842 141 33 10 chr12 51002786 51003089 -93279400 - AluJo SINE Alu -1 311 1 897 122 38 0 chr12 51003114 51003245 -93279244 - AluJb SINE Alu -176 136 1 538 208 0 62 chr12 51003245 51003375 -93279114 + L2 LINE L2 3160 3281 -32 333 0 0 0 chr12 51003409 51003446 -93279043 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr12 51003606 51003629 -93278860 + (TGG)n Simple_repeat Simple_repeat 3 25 0 1954 113 3 0 chr12 51003690 51003998 -93278491 - AluSx SINE Alu 0 309 1 2371 61 13 6 chr12 51004050 51004361 -93278128 - AluSp SINE Alu 0 313 1 23 0 0 0 chr12 51004687 51004710 -93277779 + AT_rich Low_complexity Low_complexity 1 23 0 1949 127 20 0 chr12 51004806 51005098 -93277391 + AluSx SINE Alu 1 298 -14 996 140 0 0 chr12 51005179 51005329 -93277160 + AluSg/x SINE Alu 147 296 -14 1448 130 0 5 chr12 51005335 51005551 -93276938 + AluSq SINE Alu 1 215 -98 2207 98 0 0 chr12 51005587 51005882 -93276607 - AluSg SINE Alu -15 295 1 2479 52 0 7 chr12 51005891 51006198 -93276291 - AluYb8 SINE Alu -13 305 1 2271 46 28 3 chr12 51006341 51006625 -93275864 - AluSc SINE Alu -18 291 1 203 196 0 43 chr12 51007710 51007756 -93274733 + G-rich Low_complexity Low_complexity 4 47 0 25 31 0 0 chr12 51010738 51010770 -93271719 + AT_rich Low_complexity Low_complexity 1 32 0 1589 100 5 0 chr12 51011451 51011671 -93270818 + AluSg SINE Alu 1 221 -89 2341 69 0 20 chr12 51012690 51012993 -93269496 + AluSp SINE Alu 1 297 -16 2084 105 10 0 chr12 51013001 51013297 -93269192 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr12 51013401 51013423 -93269066 + AT_rich Low_complexity Low_complexity 1 22 0 1751 152 20 17 chr12 51013510 51013812 -93268677 + AluJb SINE Alu 1 303 -9 1015 166 98 47 chr12 51013894 51013957 -93268532 - L1MD1 LINE L1 -8 6234 6176 815 83 108 17 chr12 51013957 51014077 -93268412 + FLAM_C SINE Alu 3 133 0 1015 166 98 47 chr12 51014077 51014309 -93268180 - L1MD1 LINE L1 -66 6176 5924 2486 77 0 0 chr12 51014311 51014622 -93267867 + AluSx SINE Alu 1 311 -1 * 2510 51 0 13 chr12 51014621 51014934 -93267555 + AluY SINE Alu 1 309 -2 1465 165 93 4 chr12 51014979 51015258 -93267231 + AluJo SINE Alu 1 304 -8 1224 158 24 0 chr12 51015351 51015515 -93266974 - AluJb SINE Alu -14 298 126 2065 94 17 14 chr12 51015515 51015812 -93266677 - AluSx SINE Alu -12 300 3 1224 158 24 0 chr12 51015812 51015856 -93266633 - AluJb SINE Alu -186 126 85 221 228 202 70 chr12 51015908 51016022 -93266467 - MIR SINE MIR -111 151 23 1996 130 0 0 chr12 51016160 51016460 -93266029 + AluSx SINE Alu 9 308 -4 2007 128 3 16 chr12 51016501 51016805 -93265684 + AluJo SINE Alu 1 300 -12 1856 120 40 0 chr12 51016886 51017162 -93265327 + AluSx SINE Alu 5 291 -21 1965 107 61 0 chr12 51017292 51017572 -93264917 - AluSg SINE Alu -13 297 1 188 313 146 36 chr12 51018134 51018326 -93264163 - L2 LINE L2 -234 3038 2826 662 313 90 55 chr12 51018356 51018790 -93263699 + LTR67 LTR ERVL 51 499 -58 922 195 12 0 chr12 51018793 51018957 -93263532 - FRAM SINE Alu 0 166 1 2123 119 0 0 chr12 51018972 51019267 -93263222 - AluSx SINE Alu -17 295 1 34 19 0 19 chr12 51019269 51019304 -93263185 + AT_rich Low_complexity Low_complexity 1 36 -15 2162 120 0 0 chr12 51019304 51019613 -93262876 - AluSg SINE Alu -1 309 1 34 19 0 19 chr12 51019613 51019629 -93262860 + AT_rich Low_complexity Low_complexity 36 51 0 24 0 0 0 chr12 51019701 51019725 -93262764 + AT_rich Low_complexity Low_complexity 1 24 0 2076 128 3 0 chr12 51019903 51020215 -93262274 + AluSq SINE Alu 1 313 0 2409 67 0 19 chr12 51020796 51021111 -93261378 + AluY SINE Alu 1 309 -2 1000 157 0 4 chr12 51022023 51022227 -93260262 + AluJb SINE Alu 2 295 -17 2418 55 0 0 chr12 51022229 51022520 -93259969 + AluY SINE Alu 1 291 -20 789 164 0 0 chr12 51022527 51022643 -93259846 + FLAM_C SINE Alu 1 116 -17 1319 143 13 31 chr12 51022643 51022860 -93259629 - AluJo SINE Alu -97 215 1 2292 87 7 3 chr12 51022976 51023286 -93259203 + AluSx SINE Alu 1 311 -1 2217 94 10 3 chr12 51024007 51024316 -93258173 + AluSq SINE Alu 1 311 -2 186 289 92 13 chr12 51024803 51024879 -93257610 - MIR SINE MIR -8 254 173 2186 122 0 0 chr12 51024883 51025194 -93257295 - AluSx SINE Alu -1 311 1 258 215 43 86 chr12 51025202 51025295 -93257194 - MIR SINE MIR -59 203 115 1738 157 39 0 chr12 51025361 51025647 -93256842 - AluJb SINE Alu -15 297 1 462 224 6 99 chr12 51026515 51026601 -93255888 - L2 LINE L2 -1349 1965 1873 180 0 0 0 chr12 51026601 51026621 -93255868 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1642 187 0 3 chr12 51026626 51026909 -93255580 - AluJo SINE Alu -30 282 1 462 224 6 99 chr12 51026909 51026977 -93255512 - L2 LINE L2 -1445 1869 1820 1175 69 0 0 chr12 51027102 51027247 -93255242 - AluSq/x SINE Alu -166 147 3 1865 188 268 24 chr12 51027507 51028007 -93254482 + LTR29 LTR ERV1 1 622 0 2847 169 35 53 chr12 51028129 51028205 -93254284 + MER41D LTR ERV1 1 77 -480 1855 145 3 13 chr12 51028205 51028515 -93253974 + AluSx SINE Alu 1 307 -5 2847 169 35 53 chr12 51028515 51028829 -93253660 + MER41D LTR ERV1 77 380 -177 2211 103 3 10 chr12 51028829 51029139 -93253350 + AluSq SINE Alu 1 308 -5 2847 169 35 53 chr12 51029139 51029314 -93253175 + MER41D LTR ERV1 380 557 0 539 223 62 0 chr12 51030136 51030248 -93252241 - MIR SINE MIR -85 177 59 507 268 66 20 chr12 51031549 51031747 -93250742 - MIR SINE MIR -20 242 36 2018 108 0 3 chr12 51031959 51032246 -93250243 + AluSg SINE Alu 1 286 -24 2343 97 0 0 chr12 51032529 51032839 -93249650 + AluSx SINE Alu 1 310 -2 538 313 125 9 chr12 51033037 51033261 -93249228 + L3 LINE CR1 1307 1556 -21 338 314 131 0 chr12 51033269 51033406 -93249083 - L2 LINE L2 -7 3306 3152 806 174 0 14 chr12 51033406 51033550 -93248939 - FLAM_C SINE Alu 0 143 2 189 340 135 28 chr12 51033586 51033874 -93248615 - L2 LINE L2 -150 3122 2804 990 176 5 75 chr12 51033915 51034103 -93248386 - FAM SINE Alu 0 175 1 2293 89 3 13 chr12 51034112 51034426 -93248063 - AluSq SINE Alu -2 311 1 227 270 48 0 chr12 51034597 51034660 -93247829 + tRNA-Gly-GGG tRNA tRNA 6 71 -3 811 219 122 0 chr12 51034682 51034887 -93247602 + MIR SINE MIR 3 232 -30 1535 93 4 54 chr12 51034898 51035025 -93247464 - MER44D DNA MER2_type -1886 601 469 2198 78 10 7 chr12 51035025 51035319 -93247170 - AluSc SINE Alu -14 295 1 1535 93 4 54 chr12 51035319 51035450 -93247039 - MER44D DNA MER2_type -2018 469 301 1092 125 12 0 chr12 51035450 51035618 -93246871 - AluSg/x SINE Alu -9 303 134 1582 141 7 41 chr12 51035618 51035853 -93246636 - MER44D DNA MER2_type -424 309 83 2309 77 6 13 chr12 51035853 51036164 -93246325 - AluSp SINE Alu -4 309 1 1582 141 7 41 chr12 51036164 51036198 -93246291 - MER44D DNA MER2_type -650 83 49 281 188 0 0 chr12 51036247 51036295 -93246194 - MER44D DNA MER2_type -657 48 1 976 99 8 0 chr12 51036311 51036442 -93246047 - FLAM_C SINE Alu 0 133 2 626 190 0 0 chr12 51036638 51036738 -93245751 + FLAM_A SINE Alu 1 100 -42 211 224 0 41 chr12 51036846 51036895 -93245594 + C-rich Low_complexity Low_complexity 4 50 0 2119 110 0 10 chr12 51037127 51037428 -93245061 - AluSg SINE Alu -12 298 1 1661 188 7 3 chr12 51037431 51037729 -93244760 - AluJo SINE Alu -13 299 1 243 125 0 25 chr12 51037735 51037775 -93244714 - MLT1B LTR MaLR -350 40 2 1999 133 0 19 chr12 51040087 51040257 -93242232 - AluSx SINE Alu -10 302 139 2223 96 6 6 chr12 51040257 51040570 -93241919 - AluSq SINE Alu 0 313 1 1999 133 0 19 chr12 51040570 51040707 -93241782 - AluSx SINE Alu -173 139 1 1649 177 11 0 chr12 51040719 51041035 -93241454 - AluJb SINE Alu 0 319 1 2215 99 7 0 chr12 51041042 51041346 -93241143 - AluSx SINE Alu -6 306 1 405 250 143 45 chr12 51041800 51042024 -93240465 - MIR SINE MIR -13 249 4 1509 156 0 16 chr12 51042756 51043013 -93239476 + AluJb SINE Alu 44 296 -16 2045 119 7 0 chr12 51049868 51050161 -93232328 + AluSx SINE Alu 1 295 -17 221 262 33 0 chr12 51051940 51052001 -93230488 - MIR3 SINE MIR -31 177 115 197 375 83 17 chr12 51054142 51054262 -93228227 + L3b LINE CR1 1268 1395 -188 1630 170 54 0 chr12 51054488 51054782 -93227707 - AluJo SINE Alu 0 312 3 1985 122 14 0 chr12 51054795 51055081 -93227408 - AluSx SINE Alu -14 298 9 215 265 15 0 chr12 51057065 51057133 -93225356 + G-rich Low_complexity Low_complexity 5 73 0 24 77 0 0 chr12 51057370 51057422 -93225067 + GC_rich Low_complexity Low_complexity 1 52 0 231 226 9 57 chr12 51057617 51057795 -93224694 + GA-rich Low_complexity Low_complexity 1 169 0 219 96 58 19 chr12 51060462 51060514 -93221975 + CT-rich Low_complexity Low_complexity 3 56 0 1681 96 48 0 chr12 51062534 51062808 -93219681 - AluSx SINE Alu 0 307 22 467 120 174 22 chr12 51062908 51063000 -93219489 + AluSg/x SINE Alu 186 291 -18 366 270 234 0 chr12 51063534 51063645 -93218844 - MER91A DNA MER1_type -59 137 1 220 291 181 29 chr12 51063674 51063884 -93218605 - L3b LINE CR1 -37 1546 1305 218 245 38 19 chr12 51064175 51064228 -93218261 + L2 LINE L2 3207 3260 -12 189 0 0 0 chr12 51064494 51064515 -93217974 + (CACAG)n Simple_repeat Simple_repeat 1 21 0 298 320 87 0 chr12 51065690 51065793 -93216696 + MIR SINE MIR 19 130 -78 22 35 0 0 chr12 51065795 51065824 -93216665 + AT_rich Low_complexity Low_complexity 1 29 0 629 125 67 0 chr12 51065824 51065928 -93216561 - HY1 scRNA scRNA -1 111 1 2172 110 0 3 chr12 51065932 51066242 -93216247 - AluSx SINE Alu -3 309 1 1716 91 38 19 chr12 51066267 51066531 -93215958 - AluSg SINE Alu -3 307 39 219 175 0 0 chr12 51066752 51066792 -93215697 + L3b LINE CR1 1540 1579 -4 191 333 153 0 chr12 51066777 51066849 -93215640 - MIR SINE MIR -151 111 29 * 1121 155 0 44 chr12 51067022 51067228 -93215261 - AluJb SINE Alu -115 197 1 1989 92 35 0 chr12 51067289 51067571 -93214918 - AluSq SINE Alu -21 292 1 475 247 42 83 chr12 51067589 51067787 -93214702 - MLT1F LTR MaLR -369 198 3 24 0 0 0 chr12 51067837 51067861 -93214628 + AT_rich Low_complexity Low_complexity 1 24 0 1369 100 5 0 chr12 51067861 51068051 -93214438 - AluSp SINE Alu -25 288 98 1966 130 20 3 chr12 51068074 51068367 -93214122 - AluSx SINE Alu -13 299 2 249 271 71 12 chr12 51068374 51068459 -93214030 - MIR SINE MIR -50 212 123 2167 66 11 3 chr12 51068564 51068850 -93213639 - AluY SINE Alu -23 288 1 2170 108 22 126 chr12 51068851 51069304 -93213185 - L1MC1 LINE L1 -25 6308 5903 2242 68 41 0 chr12 51069307 51069599 -93212890 - AluY SINE Alu -7 304 1 679 225 6 52 chr12 51069645 51069818 -93212671 + L2 LINE L2 3149 3313 0 2101 116 0 3 chr12 51069824 51070125 -93212364 + AluSx SINE Alu 1 300 -12 1052 147 0 0 chr12 51070754 51070911 -93211578 - AluJo SINE Alu -22 290 134 29 28 0 0 chr12 51071302 51071338 -93211151 + AT_rich Low_complexity Low_complexity 1 36 0 2038 127 3 0 chr12 51071338 51071629 -93210860 - AluSx SINE Alu -20 292 1 703 129 9 35 chr12 51071643 51071759 -93210730 - AluJo SINE Alu -176 136 24 2352 183 130 34 chr12 51071774 51072283 -93210206 - L1MC4 LINE L1 -12 8030 7449 1903 137 0 7 chr12 51072283 51072575 -93209914 + AluSx SINE Alu 1 290 -22 2352 183 130 34 chr12 51072575 51072689 -93209800 - L1MC4 LINE L1 -593 7449 7347 2107 115 3 0 chr12 51072694 51072989 -93209500 - AluSx SINE Alu -16 296 1 2069 133 0 0 chr12 51073718 51074012 -93208477 + AluSx SINE Alu 1 294 -18 1343 171 0 81 chr12 51074181 51074502 -93207987 + AluJo SINE Alu 1 295 -17 2010 147 28 3 chr12 51074659 51074986 -93207503 + MER7A DNA MER2_type 2 334 -12 5215 106 35 42 chr12 51075252 51076788 -93205701 - SVA Other Other -518 1004 1 498 108 0 0 chr12 51076788 51076862 -93205627 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 212 298 11 21 chr12 51077148 51077242 -93205247 + GA-rich Low_complexity Low_complexity 3 95 0 683 301 125 50 chr12 51077688 51078331 -93204158 + L2 LINE L2 2549 3236 -36 303 231 15 0 chr12 51078794 51078859 -93203630 - MIR SINE MIR -108 154 89 * 317 286 38 53 chr12 51078855 51078948 -93203541 - MIR3 SINE MIR -31 177 85 1821 159 55 104 chr12 51078948 51079439 -93203050 - MLT1C LTR MaLR 0 467 1 317 286 38 53 chr12 51079439 51079478 -93203011 - MIR3 SINE MIR -123 85 47 715 201 7 0 chr12 51079662 51079816 -93202673 - L1MA10 LINE L1 -2 6332 6178 407 244 69 8 chr12 51079817 51079948 -93202541 - L1ME3 LINE L1 -138 6024 5886 776 203 14 88 chr12 51079949 51080003 -93202486 - MLT1A1 LTR MaLR -1 364 308 2105 103 0 3 chr12 51080003 51080295 -93202194 - AluSg SINE Alu -19 291 1 776 203 14 88 chr12 51080295 51080457 -93202032 - MLT1A1 LTR MaLR -57 308 164 945 182 5 42 chr12 51080473 51080665 -93201824 - MLT1A1 LTR MaLR -171 194 10 660 150 41 34 chr12 51080666 51080813 -93201676 - L1ME LINE L1 -688 5478 5331 2475 69 0 0 chr12 51080953 51081259 -93201230 - AluY SINE Alu -4 307 2 391 284 97 22 chr12 51081770 51081994 -93200495 - L1ME LINE L1 -1232 4914 4672 2330 88 0 0 chr12 51082002 51082308 -93200181 - AluSg SINE Alu -4 306 1 1878 120 40 0 chr12 51082309 51082585 -93199904 - AluSx SINE Alu -19 293 7 2120 125 6 3 chr12 51082703 51083015 -93199474 - AluSq SINE Alu 0 313 1 332 205 48 43 chr12 51083412 51083525 -93198964 - MLT1G1 LTR MaLR -1 580 441 309 221 21 21 chr12 51083688 51083799 -93198690 - MLT1I LTR MaLR -266 143 64 2178 121 0 0 chr12 51083856 51084161 -93198328 - AluSx SINE Alu -7 305 1 285 167 0 0 chr12 51084424 51084478 -93198011 + (CAG)n Simple_repeat Simple_repeat 1 54 0 2034 117 0 7 chr12 51084729 51085045 -93197444 + AluSx SINE Alu 1 314 0 283 293 100 10 chr12 51085058 51085219 -93197270 + MLT1J LTR MaLR 261 443 -8 185 295 105 11 chr12 51085242 51085337 -93197152 - L3b LINE CR1 -203 1380 1277 2260 89 3 13 chr12 51087091 51087407 -93195082 + AluSq SINE Alu 1 313 0 49 43 0 0 chr12 51087526 51087596 -93194893 + AT_rich Low_complexity Low_complexity 1 70 0 4083 204 43 88 chr12 51088061 51089156 -93193333 - HERVL LTR ERVL -3958 1696 669 230 317 124 65 chr12 51090297 51090483 -93192006 - MIR SINE MIR -38 224 28 1452 148 104 32 chr12 51090532 51090810 -93191679 - AluJo SINE Alu -14 298 1 927 335 123 25 chr12 51092087 51092336 -93190153 + L3 LINE CR1 224 447 -1130 2261 86 0 10 chr12 51092336 51092640 -93189849 + AluSg SINE Alu 1 301 -9 927 335 123 25 chr12 51092640 51093032 -93189457 + L3 LINE CR1 447 928 -649 2060 119 0 0 chr12 51093039 51093342 -93189147 - AluY SINE Alu -8 303 1 395 289 52 15 chr12 51093357 51093492 -93188997 + L3 LINE CR1 1156 1295 -282 1496 164 0 36 chr12 51094286 51094560 -93187929 + AluJb SINE Alu 1 264 -48 225 235 20 0 chr12 51094734 51094785 -93187704 + LTR30 LTR ERV1 1 52 -670 1393 100 37 70 chr12 51094787 51095081 -93187408 + LTR12 LTR ERV1 55 257 -457 411 203 25 25 chr12 51095081 51095203 -93187286 + LTR30 LTR ERV1 544 716 -78 1658 113 36 2 chr12 51095203 51095445 -93187044 + LTR12 LTR ERV1 366 714 0 374 306 153 6 chr12 51096220 51096403 -93186086 - L1ME4a LINE L1 -175 5946 5737 22 35 0 0 chr12 51096525 51096554 -93185935 + AT_rich Low_complexity Low_complexity 1 29 0 5538 151 26 14 chr12 51096560 51097531 -93184958 - L1MA7 LINE L1 -3 6288 5307 2085 118 0 0 chr12 51097756 51098052 -93184437 + AluSg SINE Alu 1 296 -14 918 302 170 16 chr12 51098073 51098679 -93183810 + L1MEc LINE L1 39 787 -5609 1831 76 16 0 chr12 51098679 51098930 -93183559 + AluSg SINE Alu 56 310 0 918 302 170 16 chr12 51098930 51099081 -93183408 + L1MEc LINE L1 787 913 -5483 708 294 90 12 chr12 51099056 51099311 -93183178 + L1M3d LINE L1 5 279 -5612 * 757 248 12 40 chr12 51099598 51099848 -93182641 - L1MA9 LINE L1 -109 6203 5961 180 0 0 0 chr12 51099944 51099964 -93182525 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1407 255 91 10 chr12 51099964 51100450 -93182039 + L1M3d LINE L1 2142 2666 -3304 1881 90 0 131 chr12 51100480 51100815 -93181674 - AluSc SINE Alu -18 291 1 180 0 0 0 chr12 51101285 51101305 -93181184 + (T)n Simple_repeat Simple_repeat 1 20 0 2247 84 3 7 chr12 51101344 51101652 -93180837 + AluSc SINE Alu 1 307 -2 256 100 20 0 chr12 51101937 51101987 -93180502 - L1MB3 LINE L1 0 6183 6133 727 195 0 0 chr12 51102019 51102137 -93180352 - FLAM_C SINE Alu -15 118 1 875 219 5 5 chr12 51102138 51102330 -93180159 - L1MB4 LINE L1 -50 6130 5939 1798 140 0 0 chr12 51102333 51102612 -93179877 - AluJb SINE Alu -16 296 18 21 0 0 0 chr12 51102719 51102740 -93179749 + AT_rich Low_complexity Low_complexity 1 21 0 815 151 0 0 chr12 51104785 51104904 -93177585 + AluJb SINE Alu 2 120 -192 37 0 0 0 chr12 51104904 51104941 -93177548 + AT_rich Low_complexity Low_complexity 1 37 0 2156 119 0 0 chr12 51105375 51105677 -93176812 - AluSx SINE Alu -10 302 1 689 241 60 0 chr12 51105721 51105887 -93176602 - FRAM SINE Alu -3 173 1 181 312 163 35 chr12 51105959 51106100 -93176389 + MER5A DNA MER1_type 12 170 -19 498 262 222 12 chr12 51106183 51106431 -93176058 - LTR16B LTR ERVL -157 307 8 393 301 55 6 chr12 51106487 51106650 -93175839 - HERV16 LTR ERVL -94 4902 4732 934 211 81 46 chr12 51106753 51107069 -93175420 + MLT1E2 LTR MaLR 6 365 -259 286 303 105 61 chr12 51107119 51107413 -93175076 + L2 LINE L2 2579 2885 -429 570 242 128 31 chr12 51107441 51107668 -93174821 + MIR SINE MIR 14 262 0 923 234 33 0 chr12 51107718 51107902 -93174587 - Charlie1 DNA MER1_type -1437 1324 1135 997 120 0 0 chr12 51108036 51108186 -93174303 - AluSc SINE Alu 0 309 160 494 250 66 70 chr12 51108207 51108323 -93174166 - L1MB4 LINE L1 -362 5808 5693 1494 171 13 70 chr12 51108323 51108639 -93173850 + AluJo SINE Alu 1 298 -14 494 250 66 70 chr12 51108639 51108778 -93173711 - L1MB4 LINE L1 -477 5693 5554 637 211 0 23 chr12 51108778 51108911 -93173578 - FLAM_A SINE Alu -3 130 1 376 321 14 29 chr12 51109022 51109162 -93173327 - L1MB4 LINE L1 -1312 4834 4697 1260 225 249 34 chr12 51109197 51109291 -93173198 + LTR50 LTR ERVL 72 144 -651 2095 121 7 0 chr12 51109291 51109598 -93172891 - AluSq SINE Alu -4 309 1 1260 225 249 34 chr12 51109598 51110009 -93172480 + LTR50 LTR ERVL 144 686 -109 340 246 180 55 chr12 51110049 51110305 -93172184 + L1M4 LINE L1 3852 4139 -2007 1841 202 135 49 chr12 51110435 51111129 -93171360 - L1MC5 LINE L1 -160 7801 7048 1896 148 14 43 chr12 51111130 51111290 -93171199 - MLT1A1 LTR MaLR -3 362 199 1885 80 112 0 chr12 51111290 51111566 -93170923 - AluSg SINE Alu -3 307 1 1896 148 14 43 chr12 51111566 51111750 -93170739 - MLT1A1 LTR MaLR -166 199 28 402 93 0 0 chr12 51111751 51111805 -93170684 + U6 snRNA snRNA 2 55 -52 23 0 0 0 chr12 51111809 51111832 -93170657 + AT_rich Low_complexity Low_complexity 1 23 0 350 166 23 10 chr12 51111952 51112026 -93170463 + AluS SINE Alu 1 58 -242 377 169 0 14 chr12 51312026 51312097 -92970392 + MER41D LTR ERV1 488 557 0 585 226 61 0 chr12 51312919 51313034 -92969455 - MIR SINE MIR -85 177 56 532 268 66 20 chr12 51314333 51314531 -92967958 - MIR SINE MIR -20 242 36 2134 108 0 3 chr12 51314743 51315030 -92967459 + AluSg SINE Alu 1 286 -24 2479 93 0 0 chr12 51315313 51315623 -92966866 + AluSx SINE Alu 1 310 -2 592 299 129 13 chr12 51315821 51316045 -92966444 + L3 LINE CR1 1307 1556 -21 397 270 169 117 chr12 51316053 51316207 -92966282 - L2 LINE L2 -7 3306 3162 792 156 0 16 chr12 51316207 51316335 -92966154 - FLAM_C SINE Alu -7 126 1 397 270 169 117 chr12 51316335 51316658 -92965831 - L2 LINE L2 -151 3162 2804 1005 187 5 43 chr12 51316697 51316884 -92965605 - FAM SINE Alu -2 47 1 2458 83 3 13 chr12 51316900 51317213 -92965276 - AluSq SINE Alu -3 310 1 863 219 122 0 chr12 51317469 51317674 -92964815 + MIR SINE MIR 3 232 -30 2957 114 6 77 chr12 51317685 51317814 -92964675 - MER44D DNA MER2_type -1886 601 464 2327 75 10 7 chr12 51317814 51318106 -92964383 - AluSc SINE Alu -16 293 1 2957 114 6 77 chr12 51318106 51318238 -92964251 - MER44D DNA MER2_type -2023 464 324 955 177 12 0 chr12 51318238 51318402 -92964087 - AluJo SINE Alu 0 302 137 2957 114 6 77 chr12 51318402 51318640 -92963849 - MER44D DNA MER2_type -2163 324 84 2426 80 6 13 chr12 51318640 51318951 -92963538 - AluSp SINE Alu -4 309 1 2957 114 6 77 chr12 51318951 51318985 -92963504 - MER44D DNA MER2_type -2403 84 49 276 188 0 0 chr12 51319034 51319082 -92963407 - MER44D DNA MER2_type -657 48 1 977 99 8 0 chr12 51319097 51319228 -92963261 - AluJo SINE Alu -169 133 2 637 190 0 0 chr12 51319424 51319524 -92962965 + FLAM_A SINE Alu 1 100 -42 211 224 0 41 chr12 51319632 51319681 -92962808 + C-rich Low_complexity Low_complexity 4 50 0 900 301 76 29 chr12 51319919 51320353 -92962136 + L2 LINE L2 2790 3242 -30 192 109 43 65 chr12 51320583 51320629 -92961860 + L2 LINE L2 3269 3313 0 758 274 32 5 chr12 51321690 51321876 -92960613 + MIR SINE MIR 67 257 -5 1854 103 4 0 chr12 51321995 51322228 -92960261 - AluSx SINE Alu -77 235 2 561 65 39 0 chr12 51322249 51322326 -92960163 - U6 snRNA snRNA -27 80 1 372 94 0 0 chr12 51322337 51322390 -92960099 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 2116 136 7 10 chr12 51322413 51322723 -92959766 - AluSx SINE Alu -3 309 1 2282 119 0 13 chr12 51322735 51323047 -92959442 - AluSg SINE Alu -2 308 1 1064 151 21 31 chr12 51323047 51323228 -92959261 - AluJb SINE Alu -18 294 114 1088 188 33 36 chr12 51323295 51323571 -92958918 + AluSx SINE Alu 27 301 -11 27 0 0 0 chr12 51324717 51324744 -92957745 + AT_rich Low_complexity Low_complexity 1 27 0 2364 97 3 0 chr12 51325621 51325919 -92956570 + AluSp SINE Alu 1 299 -14 23 54 0 0 chr12 51327752 51327789 -92954700 + GC_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr12 51328130 51328150 -92954339 + (CAG)n Simple_repeat Simple_repeat 2 21 0 516 235 119 27 chr12 51328501 51328662 -92953827 - MIR SINE MIR -65 143 15 2415 62 14 0 chr12 51328979 51329269 -92953220 - AluSx SINE Alu -8 304 11 1733 124 124 14 chr12 51329272 51329547 -92952942 - AluSx SINE Alu -7 305 1 1227 108 11 16 chr12 51329579 51329764 -92952725 - AluSq SINE Alu -29 284 101 985 257 14 17 chr12 51330221 51330513 -92951976 - MER102b DNA MER1_type 0 341 51 618 280 30 24 chr12 51330578 51330746 -92951743 + MIR3 SINE MIR 22 190 -18 1908 151 0 40 chr12 51330895 51331220 -92951269 - AluJo SINE Alu 0 312 1 297 196 124 21 chr12 51331587 51331684 -92950805 - L1MC4a LINE L1 -1628 6180 6074 11417 26 1 104 chr12 51331732 51333278 -92949211 + SVA Other Other 1 1386 0 1247 138 0 20 chr12 51333346 51333542 -92948947 + AluSg/x SINE Alu 119 310 0 1672 172 59 10 chr12 51334150 51334274 -92948215 + AluJo SINE Alu 1 118 -194 183 42 0 0 chr12 51334274 51334298 -92948191 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1672 172 59 10 chr12 51334298 51334463 -92948026 + AluJo SINE Alu 118 304 -8 2231 110 3 10 chr12 51334463 51334595 -92947894 + AluSg SINE Alu 1 132 -178 2123 91 7 27 chr12 51334595 51334918 -92947571 + AluSg SINE Alu 2 310 0 2231 110 3 10 chr12 51334918 51335084 -92947405 + AluSg SINE Alu 132 297 -13 319 216 54 0 chr12 51335154 51335228 -92947261 + L1MC5 LINE L1 6722 6799 -1162 2201 77 4 4 chr12 51335365 51335637 -92946852 + AluSq SINE Alu 7 278 -35 2152 89 71 0 chr12 51335642 51335923 -92946566 + AluSp SINE Alu 1 301 -12 2209 96 0 4 chr12 51336155 51336457 -92946032 + AluSc SINE Alu 1 301 0 487 275 23 8 chr12 51336704 51336835 -92945654 + MIR3 SINE MIR 24 156 -52 687 90 90 0 chr12 51338241 51338388 -92944101 - AluSg/x SINE Alu 0 329 174 2241 167 22 66 chr12 51338893 51339271 -92943218 + L1MB7 LINE L1 5492 5885 -299 1679 159 46 13 chr12 51339271 51339573 -92942916 + AluJb SINE Alu 1 312 0 2209 96 10 3 chr12 51339580 51339871 -92942618 - AluSx SINE Alu -19 293 1 2241 167 22 66 chr12 51339871 51339986 -92942503 + L1MB7 LINE L1 5891 5971 -213 264 122 0 0 chr12 51340016 51340057 -92942432 + (TC)n Simple_repeat Simple_repeat 1 41 0 675 167 32 58 chr12 51340058 51340214 -92942275 - AluSg/x SINE Alu -24 286 135 410 325 103 20 chr12 51340521 51340862 -92941627 + L2 LINE L2 1784 2152 -1162 869 147 81 0 chr12 51340909 51341045 -92941444 - FRAM SINE Alu -10 166 20 27 0 0 0 chr12 51341061 51341088 -92941401 + AT_rich Low_complexity Low_complexity 1 27 0 1205 189 0 5 chr12 51341112 51341318 -92941171 - AluJo SINE Alu -107 205 1 430 276 148 54 chr12 51341373 51341536 -92940953 + L2 LINE L2 2521 2667 -605 351 0 0 0 chr12 51341536 51341575 -92940914 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1980 124 36 0 chr12 51341577 51341851 -92940638 - AluSx SINE Alu -13 299 16 430 276 148 54 chr12 51341851 51341997 -92940492 + L2 LINE L2 2667 2798 -474 2514 83 3 3 chr12 51341997 51342309 -92940180 - AluSp SINE Alu -1 312 1 430 276 148 54 chr12 51342309 51342425 -92940064 + L2 LINE L2 2798 2995 -277 2415 97 3 0 chr12 51342431 51342742 -92939747 - AluSx SINE Alu 0 312 1 2121 134 3 0 chr12 51342744 51343042 -92939447 - AluSx SINE Alu -10 302 4 1407 204 133 76 chr12 51343244 51343657 -92938832 - MLT2B1 LTR ERVL -3 517 70 1626 189 0 44 chr12 51343657 51343827 -92938662 - AluJo SINE Alu -8 304 153 2099 103 3 51 chr12 51343827 51344139 -92938350 - AluSq SINE Alu -16 297 1 1626 189 0 44 chr12 51344139 51344286 -92938203 - AluJo SINE Alu -159 153 1 1407 204 133 76 chr12 51344286 51344361 -92938128 - MLT2B1 LTR ERVL -450 70 1 2233 83 17 3 chr12 51344361 51344651 -92937838 + AluSc SINE Alu 1 294 -15 815 144 92 20 chr12 51344651 51344804 -92937685 + AluJo/FRAM SINE Alu 134 297 -15 2835 132 39 41 chr12 51344804 51345363 -92937126 - ERVL-B1 LTR ERVL -136 5628 5071 1332 132 11 0 chr12 51345363 51345552 -92936937 - AluSg/x SINE Alu -2 308 118 2032 127 4 0 chr12 51345582 51345857 -92936632 - AluSx SINE Alu -21 291 16 267 247 41 14 chr12 51345859 51345932 -92936557 + L2 LINE L2 2686 2760 -554 326 273 30 50 chr12 51346220 51346319 -92936170 - L1MC4 LINE L1 -1333 6709 6613 853 153 0 0 chr12 51346340 51346458 -92936031 - FLAM_C SINE Alu -25 118 1 1020 139 53 0 chr12 51346474 51346625 -92935864 + AluJb SINE Alu 132 290 -22 2747 35 0 3 chr12 51347329 51347640 -92934849 - AluY SINE Alu -1 310 1 54 0 0 0 chr12 51347994 51348048 -92934441 + AT_rich Low_complexity Low_complexity 1 54 0 1587 92 0 14 chr12 51348266 51348473 -92934016 - AluSg SINE Alu -106 204 1 670 194 61 41 chr12 51348490 51348686 -92933803 + L1MC5 LINE L1 6970 7169 -792 674 144 0 106 chr12 51348686 51348818 -92933671 + FLAM_C SINE Alu 1 118 -15 1864 154 17 7 chr12 51348874 51349173 -92933316 - AluJb SINE Alu -10 302 1 376 147 173 115 chr12 51349187 51349343 -92933146 + L1MC5 LINE L1 7144 7308 -653 388 162 97 97 chr12 51349373 51349447 -92933042 + L1MC4a LINE L1 5787 5860 -1948 1627 158 0 0 chr12 51349447 51349688 -92932801 - AluJb SINE Alu -71 241 1 388 162 97 97 chr12 51349688 51349767 -92932722 + L1MC4a LINE L1 5859 5940 -1868 540 283 57 6 chr12 51350068 51350227 -92932262 - L2 LINE L2 0 3272 3106 545 157 0 0 chr12 51350758 51350847 -92931642 - ERVL LTR ERVL -702 5062 4974 * 921 179 0 123 chr12 51350846 51351081 -92931408 - ERVL LTR ERVL -924 4840 4635 2071 92 7 56 chr12 51351081 51351385 -92931104 + AluSx SINE Alu 1 289 -23 315 122 0 0 chr12 51351385 51351434 -92931055 + (GA)n Simple_repeat Simple_repeat 1 49 0 1828 104 4 0 chr12 51351448 51351688 -92930801 + AluSp SINE Alu 58 298 -15 496 133 60 0 chr12 51351688 51351771 -92930718 - ERVL LTR ERVL -1121 4643 4556 31 0 0 0 chr12 51351910 51351941 -92930548 + AT_rich Low_complexity Low_complexity 1 31 0 485 278 70 86 chr12 51351971 51352298 -92930191 - L1ME4a LINE L1 -11 6110 5789 207 271 188 10 chr12 51352513 51352609 -92929880 - L2 LINE L2 -211 3061 2949 267 339 83 0 chr12 51352678 51352787 -92929702 - L2 LINE L2 -8 3264 3147 1252 181 25 0 chr12 51352986 51353190 -92929299 - AluJo SINE Alu -19 293 85 498 233 35 35 chr12 51353313 51353515 -92928974 - L1ME4a LINE L1 -757 5389 5188 490 93 0 0 chr12 51353630 51353705 -92928784 + L1MA2 LINE L1 6230 6304 0 226 213 74 46 chr12 51353812 51353920 -92928569 - L1ME4a LINE L1 -1066 5080 4970 291 247 0 0 chr12 51353970 51354043 -92928446 - L1ME4a LINE L1 -1278 4868 4796 1322 119 0 0 chr12 51354046 51354222 -92928267 - AluSg/x SINE Alu 0 310 135 1862 152 35 0 chr12 51354225 51354508 -92927981 - AluJb SINE Alu -19 293 1 1148 140 61 13 chr12 51354517 51354746 -92927743 - L1MB3 LINE L1 0 6183 5944 241 196 36 0 chr12 51354891 51354947 -92927542 + AluJb SINE Alu 88 145 -157 847 138 0 0 chr12 51354949 51355079 -92927410 + AluSg/x SINE Alu 176 305 -7 784 141 25 0 chr12 51355098 51355219 -92927270 + AluJo SINE Alu 11 134 -178 22 0 0 0 chr12 51355219 51355241 -92927248 + AT_rich Low_complexity Low_complexity 1 22 0 2199 97 7 17 chr12 51356537 51356836 -92925653 - AluSg SINE Alu -14 296 1 1721 166 28 3 chr12 51356909 51357199 -92925290 - AluJo SINE Alu -15 297 1 211 358 88 15 chr12 51357305 51357442 -92925047 + L2 LINE L2 2260 2406 -908 186 161 0 0 chr12 51357652 51357683 -92924806 - L3 LINE CR1 -6 1571 1541 1929 151 0 35 chr12 51358155 51358472 -92924017 - AluJb SINE Alu -6 306 1 206 312 0 13 chr12 51362183 51362260 -92920229 + GA-rich Low_complexity Low_complexity 6 81 0 704 172 34 37 chr12 51364877 51365066 -92917423 + MIR SINE MIR 18 215 -47 1732 91 14 0 chr12 51365066 51365285 -92917204 + AluSg/x SINE Alu 78 299 -13 1030 138 25 12 chr12 51365285 51365445 -92917044 + AluSg/x SINE Alu 132 293 -17 2310 95 9 22 chr12 51366301 51366618 -92915871 + AluSp SINE Alu 1 313 0 294 115 0 0 chr12 51368577 51368629 -92913860 + (CA)n Simple_repeat Simple_repeat 1 52 0 571 178 70 23 chr12 51372950 51373079 -92909410 + MIR3 SINE MIR 60 194 -14 973 271 106 23 chr12 51373513 51373817 -92908672 + L2 LINE L2 2601 2879 -434 832 163 0 15 chr12 51373817 51373952 -92908537 - FLAM_C SINE Alu 0 133 1 973 271 106 23 chr12 51373952 51374287 -92908202 + L2 LINE L2 2879 3280 -33 211 231 0 0 chr12 51374356 51374395 -92908094 + L2 LINE L2 3265 3303 -10 2317 104 0 0 chr12 51374395 51374693 -92907796 + AluSx SINE Alu 1 298 -14 189 358 57 23 chr12 51376021 51376197 -92906292 + L2 LINE L2 3127 3308 -5 2084 129 34 3 chr12 51376438 51376732 -92905757 + AluSx SINE Alu 1 303 -9 2190 106 7 10 chr12 51376732 51376867 -92905622 + AluSx SINE Alu 1 135 -177 1904 101 69 11 chr12 51376867 51377143 -92905346 + AluY SINE Alu 1 292 -19 2190 106 7 10 chr12 51377143 51377300 -92905189 + AluSx SINE Alu 135 292 -20 2031 138 17 3 chr12 51377374 51377672 -92904817 - AluSx SINE Alu -10 302 1 232 298 184 26 chr12 51378857 51378875 -92903614 - L2 LINE L2 -1 3312 3298 2270 102 7 0 chr12 51378875 51379170 -92903319 - AluY SINE Alu -14 297 1 232 298 184 26 chr12 51379170 51379265 -92903224 - L2 LINE L2 -15 3298 3181 1783 168 13 7 chr12 51379488 51379791 -92902698 + AluJb SINE Alu 1 305 -7 1090 175 99 56 chr12 51379833 51380085 -92902404 - AluJo SINE Alu -15 297 35 2248 129 0 0 chr12 51380094 51380397 -92902092 + AluSg SINE Alu 1 303 -7 475 319 155 15 chr12 51380439 51380775 -92901714 - L2 LINE L2 -568 2746 2364 2012 132 3 7 chr12 51380780 51381083 -92901406 - AluY SINE Alu -3 308 7 557 367 43 101 chr12 51381127 51381405 -92901084 - AluSc SINE Alu -36 273 12 1065 156 6 0 chr12 51381414 51381574 -92900915 - FAM SINE Alu -19 166 6 202 119 0 51 chr12 51381593 51381652 -92900837 + (TTTTTG)n Simple_repeat Simple_repeat 1 56 0 1110 207 10 36 chr12 51381664 51381973 -92900516 + AluY SINE Alu 1 301 0 1600 164 28 42 chr12 51381983 51382131 -92900358 - AluJb SINE Alu -30 282 138 2320 107 7 0 chr12 51382131 51382429 -92900060 - AluSq SINE Alu -13 300 1 1600 164 28 42 chr12 51382429 51382566 -92899923 - AluJb SINE Alu -174 138 1 543 162 50 0 chr12 51382622 51382721 -92899768 - U13 snRNA snRNA 0 104 1 744 183 49 12 chr12 51383864 51384028 -92898461 + FRAM SINE Alu 1 169 -7 778 203 0 0 chr12 51384033 51384166 -92898323 + FLAM_C SINE Alu 1 133 0 1970 149 0 13 chr12 51384190 51384491 -92897998 + AluJb SINE Alu 1 297 -15 2205 129 3 0 chr12 51384746 51385141 -92897348 + AluSx SINE Alu 1 396 0 235 279 87 0 chr12 51385302 51385406 -92897083 + MLT1L LTR MaLR 503 615 0 1846 146 7 14 chr12 51385489 51385808 -92896681 + AluSq SINE Alu 1 317 0 2306 92 3 0 chr12 51385808 51386101 -92896388 + AluSp SINE Alu 1 294 -19 207 0 0 0 chr12 51386108 51386131 -92896358 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 248 283 54 33 chr12 51387238 51387330 -92895159 + L2 LINE L2 3145 3238 -34 377 311 30 52 chr12 51388646 51388913 -92893576 - MIR SINE MIR 0 262 2 1439 169 35 16 chr12 51388951 51389205 -92893284 + AluJo SINE Alu 4 262 -50 342 353 58 17 chr12 51389213 51389454 -92893035 - L3b LINE CR1 -124 1459 1209 206 322 0 0 chr12 51390874 51390933 -92891556 + C-rich Low_complexity Low_complexity 3 61 0 228 246 31 0 chr12 51391819 51391884 -92890605 + G-rich Low_complexity Low_complexity 1 67 0 1406 70 0 6 chr12 51392525 51392697 -92889792 - AluSg/x SINE Alu -9 303 133 694 147 9 0 chr12 51392860 51392969 -92889520 + AluSq/x SINE Alu 2 111 -202 1846 146 7 14 chr12 51393269 51393588 -92888901 + AluSq SINE Alu 1 317 0 2382 82 0 28 chr12 51393588 51393907 -92888582 + AluY SINE Alu 1 310 -1 2063 148 3 7 chr12 51393940 51394245 -92888244 + AluSx SINE Alu 1 304 -8 702 89 20 0 chr12 51394269 51394370 -92888119 + AluSg/x SINE Alu 196 298 -14 2007 159 10 0 chr12 51394374 51394675 -92887814 + AluJb SINE Alu 1 304 -8 514 75 194 0 chr12 51394686 51394779 -92887710 + HY1 scRNA scRNA 2 112 0 663 244 28 80 chr12 51394824 51395189 -92887300 - MLT1J LTR MaLR -91 420 100 705 214 9 13 chr12 51395192 51395371 -92887118 - L1ME2 LINE L1 -2 6316 6013 2370 108 0 0 chr12 51395611 51395917 -92886572 + AluSq SINE Alu 1 306 -7 1322 172 46 42 chr12 51396009 51396270 -92886219 + AluJb SINE Alu 40 301 -11 1958 164 0 13 chr12 51396272 51396582 -92885907 + AluSx SINE Alu 1 306 -6 893 214 9 51 chr12 51396821 51397036 -92885453 + MER58A DNA MER1_type 4 209 -15 487 257 50 34 chr12 51398666 51398845 -92883644 - MIR3 SINE MIR -7 201 20 2350 87 0 16 chr12 51398986 51399160 -92883329 - AluSx SINE Alu -6 306 138 2328 98 3 0 chr12 51399160 51399466 -92883023 - AluY SINE Alu -4 307 1 2350 87 0 16 chr12 51399466 51399602 -92882887 - AluSx SINE Alu -174 138 1 729 145 0 24 chr12 51399624 51399748 -92882741 - FLAM_C SINE Alu -16 127 7 223 184 0 0 chr12 51400090 51400128 -92882361 + (CTAGGG)n Simple_repeat Simple_repeat 2 39 0 202 250 0 21 chr12 51400429 51400477 -92882012 + MIR SINE MIR 56 102 -160 273 258 0 75 chr12 51400505 51400598 -92881891 + MIR3 SINE MIR 116 201 -7 204 216 0 0 chr12 51402838 51402889 -92879600 + (CA)n Simple_repeat Simple_repeat 1 51 0 219 69 0 0 chr12 51403631 51403660 -92878829 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 180 0 0 0 chr12 51403841 51403861 -92878628 + (CG)n Simple_repeat Simple_repeat 2 21 0 * 333 0 0 0 chr12 51403860 51403897 -92878592 + (CA)n Simple_repeat Simple_repeat 1 37 0 671 248 188 20 chr12 51406619 51406986 -92875503 - L2 LINE L2 -171 3142 2687 2280 100 6 0 chr12 51406986 51407297 -92875192 + AluSq SINE Alu 1 313 0 580 263 38 14 chr12 51407297 51407506 -92874983 - L2 LINE L2 -1498 1816 1603 763 97 29 0 chr12 51407541 51407644 -92874845 + U6 snRNA snRNA 1 106 -1 311 235 118 72 chr12 51408423 51408594 -92873895 + MIR SINE MIR 1 181 -27 2177 112 0 0 chr12 51408672 51408967 -92873522 - AluSg SINE Alu -15 295 1 288 0 0 0 chr12 51409747 51409779 -92872710 + (CA)n Simple_repeat Simple_repeat 1 32 0 26 0 0 0 chr12 51412528 51412554 -92869935 + GC_rich Low_complexity Low_complexity 1 26 0 810 159 8 0 chr12 51415161 51415293 -92867196 + FLAM_C SINE Alu 1 133 0 234 0 0 0 chr12 51415307 51415333 -92867156 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 351 0 0 0 chr12 51415332 51415371 -92867118 + (TG)n Simple_repeat Simple_repeat 2 40 0 350 299 21 14 chr12 51415721 51415865 -92866624 + (CCCTAA)n Simple_repeat Simple_repeat 3 147 0 315 301 16 91 chr12 51416539 51416725 -92865764 + MIR SINE MIR 87 258 -4 192 97 0 0 chr12 51416997 51417028 -92865461 + (CA)n Simple_repeat Simple_repeat 2 32 0 312 203 0 51 chr12 51418079 51418158 -92864331 - L2 LINE L2 0 3272 3198 261 57 0 0 chr12 51419840 51419875 -92862614 + (GA)n Simple_repeat Simple_repeat 2 36 0 363 264 66 41 chr12 51419898 51420019 -92862470 + L2 LINE L2 3149 3272 0 216 309 173 0 chr12 51420381 51420491 -92861998 - L2 LINE L2 -1 3271 3143 1979 106 40 17 chr12 51420662 51420964 -92861525 + AluSx SINE Alu 3 311 -1 258 308 0 33 chr12 51421378 51421447 -92861042 + (TGGA)n Simple_repeat Simple_repeat 3 70 -20 2214 101 0 0 chr12 51421447 51421743 -92860746 + AluSx SINE Alu 1 296 -16 258 308 0 33 chr12 51421743 51421764 -92860725 + (TGGA)n Simple_repeat Simple_repeat 70 90 0 328 147 27 13 chr12 51421777 51421852 -92860637 + (TGGA)n Simple_repeat Simple_repeat 1 76 0 1779 182 0 26 chr12 51421889 51422202 -92860287 + AluJo SINE Alu 1 305 -7 1973 113 0 0 chr12 51422203 51422469 -92860020 + AluSx SINE Alu 1 266 -46 204 348 58 0 chr12 51422793 51422862 -92859627 + L2 LINE L2 3150 3222 -50 2229 105 0 3 chr12 51423731 51424035 -92858454 - AluSg SINE Alu -7 303 1 2399 88 0 0 chr12 51424035 51424342 -92858147 - AluSg SINE Alu -3 307 1 200 33 0 33 chr12 51424472 51424502 -92857987 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr12 51424502 51424523 -92857966 + AT_rich Low_complexity Low_complexity 1 21 0 828 128 0 0 chr12 51424532 51424649 -92857840 - FLAM_C SINE Alu -26 117 1 268 219 31 0 chr12 51424650 51424714 -92857775 - MIR SINE MIR -42 220 155 925 127 0 96 chr12 51424715 51424930 -92857559 - FRAM SINE Alu 0 195 1 436 209 44 0 chr12 51424933 51425024 -92857465 - MIR SINE MIR -102 160 66 1900 155 26 0 chr12 51425303 51425606 -92856883 - AluSx SINE Alu -1 311 1 227 341 146 9 chr12 51425699 51425919 -92856570 + L2 LINE L2 2811 3060 -212 198 333 58 0 chr12 51425995 51426064 -92856425 + L2 LINE L2 3187 3259 -13 1465 138 8 32 chr12 51426125 51426371 -92856118 - AluSx SINE Alu -9 303 64 251 304 0 35 chr12 51426693 51426808 -92855681 + G-rich Low_complexity Low_complexity 2 112 0 1027 175 6 0 chr12 51427128 51427311 -92855178 - MIR SINE MIR -13 249 66 525 260 85 34 chr12 51428065 51428242 -92854247 - MIR3 SINE MIR -7 201 16 21 36 0 0 chr12 51429033 51429061 -92853428 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 51429251 51429274 -92853215 + GC_rich Low_complexity Low_complexity 1 23 0 213 225 0 0 chr12 51430737 51430777 -92851712 + (TG)n Simple_repeat Simple_repeat 2 41 0 412 36 0 18 chr12 51431521 51431577 -92850912 + AluY SINE Alu 244 298 -12 1545 175 9 52 chr12 51431644 51431970 -92850519 + AluJb SINE Alu 1 312 0 1918 151 7 0 chr12 51432145 51432444 -92850045 + AluSx SINE Alu 12 312 0 204 281 67 74 chr12 51432549 51432684 -92849805 + L3 LINE CR1 923 1056 -521 712 174 0 58 chr12 51432715 51432853 -92849636 - AluSg/x SINE Alu -5 307 178 804 208 9 56 chr12 51434043 51434259 -92848230 - MER58A DNA MER1_type -15 209 4 1851 168 0 13 chr12 51434498 51434808 -92847681 - AluSx SINE Alu -6 306 1 1264 176 46 42 chr12 51434810 51435071 -92847418 - AluJb SINE Alu -11 301 40 2228 114 0 0 chr12 51435163 51435469 -92847020 - AluSq SINE Alu -7 306 1 2260 94 3 3 chr12 51435479 51435787 -92846702 - AluSq SINE Alu -5 308 1 2463 45 0 0 chr12 51436559 51436851 -92845638 + AluY SINE Alu 1 292 -19 2082 128 0 10 chr12 51436862 51437174 -92845315 + AluSx SINE Alu 1 309 -3 2484 44 7 0 chr12 51437312 51437610 -92844879 + AluY SINE Alu 1 300 -11 2030 112 0 7 chr12 51437878 51438172 -92844317 + AluSc SINE Alu 1 292 -17 207 69 0 0 chr12 51438367 51438396 -92844093 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 1901 164 0 3 chr12 51438402 51438695 -92843794 + AluJb SINE Alu 1 292 -20 586 162 0 11 chr12 51438696 51438958 -92843531 + AluJ SINE Alu 1 309 0 231 88 0 0 chr12 51438958 51438992 -92843497 + (T)n Simple_repeat Simple_repeat 1 34 0 1834 126 0 58 chr12 51438995 51439115 -92843374 + AluSx SINE Alu 1 126 -186 2127 80 20 7 chr12 51439115 51439417 -92843072 + AluY SINE Alu 1 306 -5 1834 126 0 58 chr12 51439417 51439605 -92842884 + AluSx SINE Alu 126 291 -21 24 0 0 0 chr12 51439605 51439629 -92842860 + AT_rich Low_complexity Low_complexity 1 24 0 2354 106 0 0 chr12 51439666 51439978 -92842511 + AluSq SINE Alu 1 312 -1 1869 162 27 69 chr12 51440074 51440481 -92842008 - MLT1B LTR MaLR 0 390 1 1182 173 0 36 chr12 51440768 51441013 -92841476 - AluJo SINE Alu 0 312 86 2170 102 3 0 chr12 51441014 51441307 -92841182 - AluSx SINE Alu -1 311 18 481 229 98 88 chr12 51441336 51441469 -92841020 + MIR SINE MIR 55 192 -70 2358 99 0 3 chr12 51441469 51441783 -92840706 + AluSq SINE Alu 1 313 0 481 229 98 88 chr12 51441783 51441855 -92840634 + MIR SINE MIR 192 262 0 2219 66 7 0 chr12 51442122 51442408 -92840081 - AluY SINE Alu -21 290 3 1410 186 106 11 chr12 51442476 51442750 -92839739 + AluJo SINE Alu 3 302 0 459 0 0 0 chr12 51442784 51442835 -92839654 + (CA)n Simple_repeat Simple_repeat 2 52 0 2281 92 3 0 chr12 51442842 51443146 -92839343 + AluSp SINE Alu 1 305 -8 492 100 111 33 chr12 51443208 51443298 -92839191 + AluJb SINE Alu 11 107 -205 197 33 33 0 chr12 51446005 51446035 -92836454 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1950 104 4 18 chr12 51446041 51446181 -92836308 - AluSx SINE Alu -37 275 134 2404 75 0 3 chr12 51446181 51446486 -92836003 - AluSc SINE Alu -5 304 1 2089 131 0 0 chr12 51446488 51446785 -92835704 - AluSg SINE Alu -13 297 1 1950 104 4 18 chr12 51446785 51446919 -92835570 - AluSx SINE Alu -179 133 2 360 277 84 30 chr12 51447970 51448136 -92834353 + MIR SINE MIR 77 251 -11 871 248 193 29 chr12 51450337 51450720 -92831769 - LTR33 LTR ERVL -14 507 62 792 272 62 69 chr12 51451195 51451515 -92830974 + MER102b DNA MER1_type 3 320 -21 255 203 172 0 chr12 51452817 51452881 -92829608 - MIR SINE MIR -115 147 73 2086 151 0 3 chr12 51453738 51454037 -92828452 + AluJb SINE Alu 1 298 -14 407 217 148 0 chr12 51454414 51454529 -92827960 - MIR SINE MIR -14 248 117 1970 93 0 0 chr12 51454744 51455002 -92827487 + AluSg SINE Alu 53 310 0 1213 180 40 0 chr12 51455145 51455373 -92827116 + MER2 DNA MER2_type 36 272 -73 302 236 0 0 chr12 51455384 51455439 -92827050 - AluJo SINE Alu -16 286 232 741 142 28 43 chr12 51455440 51455581 -92826908 - AluJo SINE Alu -171 141 3 306 197 66 0 chr12 51455590 51455651 -92826838 + MER2 DNA MER2_type 280 344 -1 859 86 0 0 chr12 51455728 51455833 -92826656 - AluSp/q SINE Alu -17 296 192 2469 74 0 3 chr12 51455835 51456133 -92826356 - AluY SINE Alu -14 297 1 1598 84 20 5 chr12 51456136 51456339 -92826150 - AluSx SINE Alu -106 206 1 826 172 195 0 chr12 51456787 51456956 -92825533 - AluJb SINE Alu -45 267 66 915 191 82 10 chr12 51459368 51459562 -92822927 - AluJo SINE Alu -18 294 87 562 130 11 0 chr12 51462424 51462516 -92819973 - HY4 scRNA scRNA 0 93 1 917 218 0 5 chr12 51463076 51463264 -92819225 - MER41D LTR ERV1 -346 211 25 530 193 17 8 chr12 51463264 51463383 -92819106 - AluSp/q SINE Alu -16 297 178 2455 53 0 4 chr12 51463510 51463791 -92818698 - AluY SINE Alu -31 280 1 287 170 0 0 chr12 51463846 51463893 -92818596 + MER66B LTR ERV1 299 345 -141 533 190 52 0 chr12 51463904 51464020 -92818469 - L1MCa LINE L1 -6304 122 1 3477 251 78 59 chr12 51464022 51464385 -92818104 - L2 LINE L2 -414 2900 2545 2115 104 0 24 chr12 51464385 51464701 -92817788 - AluY SINE Alu 0 309 1 3477 251 78 59 chr12 51464701 51465035 -92817454 - L2 LINE L2 -769 2545 2219 2204 108 7 3 chr12 51465035 51465330 -92817159 + AluSg SINE Alu 3 298 -12 3477 251 78 59 chr12 51465330 51465440 -92817049 - L2 LINE L2 -1095 2219 2113 1555 184 43 4 chr12 51465440 51465718 -92816771 + AluJo SINE Alu 1 289 -23 3477 251 78 59 chr12 51465718 51466410 -92816079 - L2 LINE L2 -1201 2113 1369 554 149 0 99 chr12 51466428 51466515 -92815974 + FLAM_A SINE Alu 28 101 -210 2417 89 3 0 chr12 51466515 51466818 -92815671 - AluSp SINE Alu -9 304 1 554 149 0 99 chr12 51466818 51466851 -92815638 + FLAM_A SINE Alu 101 136 -175 604 239 113 120 chr12 51466868 51467294 -92815195 + MLT1J LTR MaLR 36 458 -53 679 227 73 122 chr12 51467378 51467748 -92814741 - L2 LINE L2 -1858 1456 1105 2321 73 0 11 chr12 51467837 51468155 -92814334 + AluY SINE Alu 1 315 0 2107 135 7 3 chr12 51468179 51468476 -92814013 + AluSx SINE Alu 1 298 -14 407 217 148 0 chr12 51468853 51468968 -92813521 - MIR SINE MIR -14 248 117 265 316 79 36 chr12 51469099 51469238 -92813251 - MIR3 SINE MIR -45 163 19 2475 80 3 0 chr12 51469325 51469624 -92812865 + AluSp SINE Alu 1 300 -13 2163 122 0 3 chr12 51469757 51470051 -92812438 + AluSg SINE Alu 1 293 -17 80 21 0 0 chr12 51470130 51470224 -92812265 + AT_rich Low_complexity Low_complexity 1 94 0 2027 161 3 3 chr12 51470288 51470599 -92811890 - AluJb SINE Alu -1 311 1 1608 160 38 31 chr12 51470601 51470894 -92811595 - AluJo SINE Alu -17 295 1 991 200 171 76 chr12 51471126 51471590 -92810899 - MLT1H LTR MaLR -2 547 1 285 275 140 31 chr12 51471841 51472063 -92810426 - MLT1J LTR MaLR -8 503 258 2421 94 7 0 chr12 51472113 51472422 -92810067 + AluSq SINE Alu 1 311 -2 1830 154 27 17 chr12 51472453 51472580 -92809909 + AluJb SINE Alu 1 125 -187 2325 89 3 19 chr12 51472580 51472896 -92809593 + AluY SINE Alu 1 311 0 1830 154 27 17 chr12 51472896 51473061 -92809428 + AluJb SINE Alu 125 296 -16 1800 174 3 0 chr12 51473065 51473358 -92809131 + AluSx SINE Alu 6 299 -13 21 36 0 0 chr12 51473401 51473429 -92809060 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr12 51473455 51473486 -92809003 + AT_rich Low_complexity Low_complexity 1 31 0 1672 159 3 45 chr12 51473619 51473711 -92808778 + AluSg1 SINE Alu 2 96 -213 2538 65 3 7 chr12 51473711 51474017 -92808472 + AluY SINE Alu 1 305 -6 1672 159 3 45 chr12 51474017 51474233 -92808256 + AluSg1 SINE Alu 96 297 -12 558 167 0 0 chr12 51474487 51474577 -92807912 + MER50 LTR ERV1 645 734 0 * 1769 147 99 17 chr12 51474577 51474930 -92807559 - LTR62 LTR ERVK -141 578 197 2473 65 0 3 chr12 51474934 51475228 -92807261 - AluSq SINE Alu -20 293 1 2448 74 0 0 chr12 51475235 51475534 -92806955 - AluY SINE Alu -12 299 1 2394 69 28 0 chr12 51475541 51475832 -92806657 - AluY SINE Alu -12 299 1 1947 153 27 0 chr12 51476100 51476394 -92806095 - AluSx SINE Alu -10 302 1 196 387 29 12 chr12 51476487 51476660 -92805829 + L2 LINE L2 2811 2986 -327 185 319 58 0 chr12 51476783 51476852 -92805637 + L2 LINE L2 3187 3259 -13 1536 138 8 32 chr12 51476913 51477159 -92805330 - AluSx SINE Alu -9 303 64 251 304 0 35 chr12 51477481 51477596 -92804893 + G-rich Low_complexity Low_complexity 2 112 0 1004 164 11 6 chr12 51477916 51478099 -92804390 - MIR SINE MIR -13 249 66 499 260 85 34 chr12 51478854 51479031 -92803458 - MIR3 SINE MIR -7 201 16 21 36 0 0 chr12 51479822 51479850 -92802639 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 51480040 51480063 -92802426 + GC_rich Low_complexity Low_complexity 1 23 0 213 225 0 0 chr12 51481525 51481565 -92800924 + (TG)n Simple_repeat Simple_repeat 2 41 0 2574 74 0 7 chr12 51484491 51484800 -92797689 + AluSg SINE Alu 1 307 -3 1713 179 3 16 chr12 51486764 51487076 -92795413 + AluJb SINE Alu 1 308 -4 855 130 0 43 chr12 51487080 51487201 -92795288 + FLAM_C SINE Alu 1 117 -185 225 0 0 0 chr12 51487201 51487226 -92795263 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 855 130 0 43 chr12 51487226 51487242 -92795247 + FLAM_C SINE Alu 117 132 -170 315 85 0 0 chr12 51487524 51487571 -92794918 + (GA)n Simple_repeat Simple_repeat 2 48 0 441 0 0 0 chr12 51487572 51487621 -92794868 + (TG)n Simple_repeat Simple_repeat 2 50 0 718 156 8 23 chr12 51489016 51489144 -92793345 + FLAM_A SINE Alu 1 126 -7 2231 88 3 3 chr12 51489445 51489756 -92792733 + AluSp SINE Alu 1 311 0 2417 83 3 7 chr12 51489762 51490063 -92792426 + AluSx SINE Alu 1 300 -12 446 248 131 7 chr12 51490070 51490223 -92792266 - MIR SINE MIR -73 189 18 5317 211 108 105 chr12 51490249 51490618 -92791871 - HAL1 LINE L1 -1 2506 2140 2311 107 3 0 chr12 51490618 51490917 -92791572 - AluSx SINE Alu -12 300 1 5317 211 108 105 chr12 51490917 51491879 -92790610 - HAL1 LINE L1 -367 2140 1182 1852 136 45 14 chr12 51491879 51492165 -92790324 - AluJo SINE Alu -12 300 6 5317 211 108 105 chr12 51492165 51492359 -92790130 - HAL1 LINE L1 -1325 1182 990 2472 96 0 0 chr12 51492359 51492671 -92789818 - AluSq SINE Alu -1 312 1 5317 211 108 105 chr12 51492671 51492860 -92789629 - HAL1 LINE L1 -1517 990 803 279 149 0 0 chr12 51492860 51492907 -92789582 - MER101B LTR ERV1 -63 507 461 5317 211 108 105 chr12 51492907 51493607 -92788882 - HAL1 LINE L1 -1704 803 33 2301 109 3 0 chr12 51493607 51493901 -92788588 - AluSx SINE Alu -17 295 1 5317 211 108 105 chr12 51493901 51493935 -92788554 - HAL1 LINE L1 -2474 33 1 282 148 19 0 chr12 51494080 51494134 -92788355 - Alu SINE Alu -3 299 245 805 126 9 0 chr12 51494137 51494248 -92788241 - AluJo SINE Alu -177 135 24 1959 118 3 36 chr12 51494314 51494620 -92787869 - AluSq SINE Alu -17 296 1 1977 136 3 0 chr12 51494628 51494915 -92787574 - AluSx SINE Alu -24 288 1 2160 121 13 0 chr12 51495125 51495432 -92787057 - AluSq SINE Alu -2 311 1 1895 143 3 10 chr12 51496002 51496302 -92786187 - AluJb SINE Alu -14 298 1 709 246 20 15 chr12 51496302 51496497 -92785992 - MIR SINE MIR -46 216 21 2117 126 3 0 chr12 51496640 51496942 -92785547 - AluSx SINE Alu -9 303 1 2088 90 0 40 chr12 51498333 51498634 -92783855 - AluSg SINE Alu -21 289 1 1658 166 28 3 chr12 51498706 51498996 -92783493 - AluJo SINE Alu -15 297 1 196 372 88 15 chr12 51499102 51499239 -92783250 + L2 LINE L2 2260 2406 -908 1847 151 0 35 chr12 51499953 51500270 -92782219 - AluJb SINE Alu -6 306 1 206 312 0 13 chr12 51503982 51504059 -92778430 + GA-rich Low_complexity Low_complexity 6 81 0 702 215 54 30 chr12 51506676 51506906 -92775583 + MIR SINE MIR 18 262 0 462 258 102 49 chr12 51507969 51508051 -92774438 + MIR SINE MIR 12 88 -174 2048 150 41 15 chr12 51508051 51508390 -92774099 + MER7A DNA MER2_type 1 346 0 462 258 102 49 chr12 51508390 51508532 -92773957 + MIR SINE MIR 88 248 -14 1893 119 7 18 chr12 51510202 51510512 -92771977 - AluSx SINE Alu 0 307 1 418 245 46 26 chr12 51511113 51511264 -92771225 - MER103 DNA DNA -10 156 3 418 353 46 7 chr12 51511355 51511508 -92770981 + L2 LINE L2 3114 3272 0 478 244 20 142 chr12 51512382 51512437 -92770052 - MIR SINE MIR -11 251 191 879 141 0 30 chr12 51512437 51512572 -92769917 - FLAM_C SINE Alu 0 133 3 478 244 20 142 chr12 51512572 51512770 -92769719 - MIR SINE MIR -71 191 29 183 80 0 0 chr12 51515205 51515230 -92767259 + (CTGGGG)n Simple_repeat Simple_repeat 3 27 0 804 172 0 0 chr12 51515541 51515763 -92766726 + (CTG)n Simple_repeat Simple_repeat 1 222 0 219 114 0 0 chr12 51515863 51515898 -92766591 + (CTG)n Simple_repeat Simple_repeat 1 35 0 303 28 0 0 chr12 51516226 51516262 -92766227 + (CTG)n Simple_repeat Simple_repeat 3 38 0 309 109 0 0 chr12 51516625 51516671 -92765818 + (CTG)n Simple_repeat Simple_repeat 2 47 0 211 280 11 65 chr12 51517950 51518043 -92764446 + MIR SINE MIR 118 205 -57 2308 109 0 0 chr12 51518306 51518618 -92763871 - AluSq SINE Alu -1 312 1 617 276 55 0 chr12 51518705 51518904 -92763585 + MIR SINE MIR 53 262 0 1182 127 0 0 chr12 51519073 51519238 -92763251 - AluSg/x SINE Alu -14 298 134 2162 109 0 34 chr12 51519238 51519559 -92762930 - AluSq SINE Alu -3 310 1 217 207 0 35 chr12 51519653 51519711 -92762778 - L2 LINE L2 0 3272 3217 240 35 0 0 chr12 51520267 51520296 -92762193 + (CTG)n Simple_repeat Simple_repeat 1 29 0 182 188 0 21 chr12 51521637 51521685 -92760804 + (CTG)n Simple_repeat Simple_repeat 1 47 0 2342 73 3 3 chr12 51528123 51528426 -92754063 + AluY SINE Alu 1 303 -8 745 222 9 86 chr12 51528457 51528678 -92753811 + MIR3 SINE MIR 5 208 0 2067 124 0 16 chr12 51529604 51529911 -92752578 - AluSq SINE Alu -11 302 1 2193 101 3 22 chr12 51530162 51530480 -92752009 - AluSx SINE Alu 0 312 1 309 345 86 0 chr12 51531161 51531277 -92751212 + L2 LINE L2 3187 3312 -1 280 348 103 13 chr12 51532184 51532339 -92750150 + MIR3 SINE MIR 2 170 -38 431 265 15 61 chr12 51536504 51536636 -92745853 - L2 LINE L2 -11 3261 3136 29 47 0 0 chr12 51542711 51542754 -92739735 + GC_rich Low_complexity Low_complexity 1 43 0 39 60 0 0 chr12 51542877 51542944 -92739545 + GC_rich Low_complexity Low_complexity 1 67 0 264 294 100 12 chr12 51544332 51544492 -92737997 - MIR SINE MIR -42 220 47 2259 95 0 3 chr12 51544623 51544918 -92737571 - AluSg SINE Alu -16 294 1 672 210 127 22 chr12 51544918 51545099 -92737390 + MER3 DNA MER1_type 10 209 0 2456 86 13 0 chr12 51545383 51545687 -92736802 - AluSq SINE Alu -5 308 1 616 249 79 0 chr12 51545693 51545870 -92736619 - MIR SINE MIR -8 254 64 1848 128 62 10 chr12 51547146 51547435 -92735054 + AluSq SINE Alu 1 304 -9 823 132 39 0 chr12 51548274 51548403 -92734086 + AluSq/x SINE Alu 1 134 -179 2354 98 0 7 chr12 51548404 51548711 -92733778 + AluSc SINE Alu 1 305 -4 238 260 234 0 chr12 51548875 51548952 -92733537 - MIR SINE MIR -86 122 28 1383 124 18 23 chr12 51549860 51550078 -92732411 - AluSg/x SINE Alu -10 302 86 615 210 8 0 chr12 51550079 51550203 -92732286 - FAM SINE Alu -60 125 1 2156 121 7 7 chr12 51550261 51550559 -92731930 + AluSx SINE Alu 5 302 -10 1246 199 23 3 chr12 51550567 51550869 -92731620 - L1MA4 LINE L1 -2 6298 5991 2414 105 0 3 chr12 51550878 51551192 -92731297 - AluSq SINE Alu 0 313 1 1847 148 7 13 chr12 51551192 51551501 -92730988 - AluSx SINE Alu -4 308 1 365 263 140 22 chr12 51553277 51553456 -92729033 - L2 LINE L2 0 3313 3114 2547 58 0 0 chr12 51553473 51553782 -92728707 - AluY SINE Alu -2 309 1 22 35 0 0 chr12 51553812 51553841 -92728648 + AT_rich Low_complexity Low_complexity 1 29 0 1004 128 0 0 chr12 51553858 51553999 -92728490 - AluJo SINE Alu -171 141 1 561 254 163 41 chr12 51554176 51554514 -92727975 - L2 LINE L2 -467 2847 2469 223 186 151 70 chr12 51554514 51554600 -92727889 - MIR SINE MIR -3 259 167 2270 95 0 24 chr12 51554600 51554895 -92727594 + AluSx SINE Alu 1 288 -24 234 0 0 0 chr12 51554895 51554921 -92727568 + (TA)n Simple_repeat Simple_repeat 2 27 0 186 177 32 113 chr12 51554928 51554990 -92727499 - L2 LINE L2 -32 3281 3225 539 289 45 21 chr12 51555065 51555372 -92727117 + LTR33 LTR ERVL 106 476 -45 229 318 0 0 chr12 51555453 51555519 -92726970 - MLT1L LTR MaLR -355 260 195 1787 139 15 68 chr12 51555611 51555935 -92726554 + AluJb SINE Alu 1 307 -5 1787 180 6 6 chr12 51555944 51556255 -92726234 + AluJo SINE Alu 1 311 -1 479 272 30 0 chr12 51556488 51556627 -92725862 - MIR SINE MIR -63 145 1 528 250 65 0 chr12 51558403 51558527 -92723962 + MER91B DNA MER1_type 19 150 -40 1892 190 0 0 chr12 51558536 51558846 -92723643 - AluSx SINE Alu -2 310 1 1470 186 24 24 chr12 51558849 51559139 -92723350 - AluJo SINE Alu -22 290 1 209 256 0 0 chr12 51559402 51559445 -92723044 - L2 LINE L2 -212 3060 3018 21 0 0 0 chr12 51560613 51560634 -92721855 + GC_rich Low_complexity Low_complexity 1 21 0 982 106 15 0 chr12 51561653 51561785 -92720704 - AluJo SINE Alu -178 134 1 346 213 55 144 chr12 51561799 51562001 -92720488 - MIR3 SINE MIR -16 192 9 2221 118 3 13 chr12 51564058 51564344 -92718145 + AluSx SINE Alu 1 285 -27 423 0 0 0 chr12 51564344 51564391 -92718098 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2221 118 3 13 chr12 51564391 51564418 -92718071 + AluSx SINE Alu 285 311 -1 27 49 0 0 chr12 51565457 51565498 -92716991 + AT_rich Low_complexity Low_complexity 1 41 0 1753 158 39 11 chr12 51567347 51567626 -92714863 - AluJo SINE Alu -24 288 2 357 212 24 12 chr12 51568924 51569009 -92713480 - LTR33 LTR ERVL -427 94 9 21 0 0 0 chr12 51569145 51569166 -92713323 + AT_rich Low_complexity Low_complexity 1 21 0 1826 78 0 0 chr12 51569218 51569437 -92713052 - AluSg SINE Alu -11 298 80 2573 65 0 7 chr12 51569437 51569742 -92712747 - AluY SINE Alu -7 304 1 581 135 0 0 chr12 51569745 51569834 -92712655 - AluSg SINE Alu -220 90 2 31 0 0 0 chr12 51569967 51569998 -92712491 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr12 51570024 51570052 -92712437 + AT_rich Low_complexity Low_complexity 1 28 0 2035 150 0 0 chr12 51570095 51570389 -92712100 - AluSx SINE Alu -13 299 6 1968 169 0 0 chr12 51570393 51570689 -92711800 - AluSx SINE Alu -16 296 1 2486 59 3 16 chr12 51570760 51571067 -92711422 - AluY SINE Alu -8 303 1 2082 115 0 71 chr12 51571074 51571254 -92711235 - AluSg SINE Alu -10 300 109 372 119 0 0 chr12 51571254 51571313 -92711176 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 2260 84 0 27 chr12 51571314 51571611 -92710878 - AluSp SINE Alu -24 289 1 2082 115 0 71 chr12 51571611 51571751 -92710738 - AluSg SINE Alu -200 110 1 2085 137 3 16 chr12 51571755 51572061 -92710428 - AluSx SINE Alu -10 302 1 270 0 0 0 chr12 51572083 51572113 -92710376 + (CA)n Simple_repeat Simple_repeat 2 31 0 1714 188 17 0 chr12 51572173 51572466 -92710023 - AluJb SINE Alu -14 298 1 2259 115 6 6 chr12 51572865 51573177 -92709312 + AluSx SINE Alu 1 312 0 194 291 126 19 chr12 51573205 51573308 -92709181 + MIR SINE MIR 34 147 -115 394 237 124 99 chr12 51573508 51573863 -92708626 + MLT1L LTR MaLR 1 364 -251 32 43 0 0 chr12 51573976 51574022 -92708467 + AT_rich Low_complexity Low_complexity 1 46 0 310 173 13 40 chr12 51574071 51574146 -92708343 + L2 LINE L2 3240 3312 -1 2219 126 0 0 chr12 51574243 51574537 -92707952 - AluSx SINE Alu -17 295 2 353 321 93 29 chr12 51574538 51574818 -92707671 - L2 LINE L2 -861 2453 2156 2343 113 0 0 chr12 51574824 51575134 -92707355 - AluSg SINE Alu 0 310 1 1340 165 30 37 chr12 51575366 51575451 -92707038 + Tigger1 DNA MER2_type 109 193 -2225 2221 112 20 0 chr12 51575451 51575747 -92706742 + AluSx SINE Alu 1 302 -10 1340 165 30 37 chr12 51575747 51576116 -92706373 + Tigger1 DNA MER2_type 193 654 -1764 2122 143 7 0 chr12 51576117 51576425 -92706064 + AluSx SINE Alu 3 312 0 316 261 112 116 chr12 51576530 51576696 -92705793 + L3 LINE CR1 923 1089 -488 1809 179 6 26 chr12 51576696 51577009 -92705480 - AluJb SINE Alu -5 307 1 316 261 112 116 chr12 51577009 51577145 -92705344 + L3 LINE CR1 1089 1224 -353 1834 140 65 16 chr12 51577296 51577617 -92704872 - MER1B DNA MER1_type 0 337 1 1004 236 23 43 chr12 51577642 51577943 -92704546 - LTR5 LTR ERVK 0 969 675 2539 66 0 0 chr12 51578109 51578411 -92704078 + AluY SINE Alu 10 311 0 1524 187 32 32 chr12 51578422 51578497 -92703992 + AluJo SINE Alu 1 75 -237 3552 74 32 8 chr12 51578497 51578996 -92703493 - MER9 LTR ERVK 0 511 1 1755 85 34 4 chr12 51578996 51579231 -92703258 + AluSq SINE Alu 70 311 -2 1524 187 32 32 chr12 51579231 51579464 -92703025 + AluJo SINE Alu 73 310 -2 1698 180 39 3 chr12 51579620 51579954 -92702535 - Tigger1 DNA MER2_type -1115 1303 958 1669 219 3 0 chr12 51579958 51580264 -92702225 - AluJo SINE Alu -5 307 1 1201 199 13 51 chr12 51580267 51580583 -92701906 - L1M4 LINE L1 -2299 3847 3544 1195 143 0 0 chr12 51580583 51580751 -92701738 + AluSg/x SINE Alu 131 298 -14 308 163 31 41 chr12 51580751 51580849 -92701640 - L1M4 LINE L1 -2588 3558 3462 255 61 0 0 chr12 51581009 51581042 -92701447 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 1195 140 0 17 chr12 51581064 51581243 -92701246 - AluSg SINE Alu -134 176 1 2141 100 4 0 chr12 51581293 51581563 -92700926 - AluSq SINE Alu -27 286 16 21 0 0 0 chr12 51582968 51582989 -92699500 + AT_rich Low_complexity Low_complexity 1 21 0 1381 106 0 0 chr12 51583264 51583444 -92699045 - AluY SINE Alu -131 180 1 563 243 75 0 chr12 51583446 51583619 -92698870 - L1M4 LINE L1 -2661 3485 3300 2115 137 3 3 chr12 51583620 51583926 -92698563 - AluSx SINE Alu -6 306 1 862 207 23 11 chr12 51583927 51584101 -92698388 - FAM SINE Alu 0 49 1 21 57 0 0 chr12 51584119 51584154 -92698335 + AT_rich Low_complexity Low_complexity 1 35 0 213 94 0 0 chr12 51784318 51784350 -92498139 + (TA)n Simple_repeat Simple_repeat 2 33 0 1485 126 84 8 chr12 51784350 51784613 -92497876 - AluJo SINE Alu -29 283 1 1806 130 24 7 chr12 51784899 51785192 -92497297 - AluJb SINE Alu 0 312 15 3022 129 11 47 chr12 51785203 51785290 -92497199 - L1MB2 LINE L1 -40 6131 6042 2484 43 0 3 chr12 51785290 51785595 -92496894 - AluY SINE Alu -7 304 1 3022 129 11 47 chr12 51785595 51786042 -92496447 - L1MB2 LINE L1 -129 6042 5616 1179 158 10 10 chr12 51786065 51786268 -92496221 - AluJo SINE Alu -23 289 87 925 129 59 32 chr12 51786268 51786454 -92496035 - L1MB2 LINE L1 -689 5491 5301 2262 98 0 0 chr12 51786461 51786758 -92495731 - AluSq SINE Alu -16 297 1 1450 183 16 45 chr12 51786765 51787077 -92495412 - AluJb SINE Alu -9 303 1 1951 113 48 10 chr12 51787140 51787433 -92495056 + AluSq SINE Alu 5 308 -5 1260 89 0 0 chr12 51787433 51787602 -92494887 + AluSg/x SINE Alu 134 302 -10 852 169 0 0 chr12 51787838 51787980 -92494509 + AluJb SINE Alu 149 290 -22 316 292 30 12 chr12 51788040 51788208 -92494281 - L1M4 LINE L1 -2171 3975 3805 1647 163 10 28 chr12 51788216 51788350 -92494139 + AluSx SINE Alu 1 136 -180 2035 129 3 0 chr12 51788350 51788653 -92493836 + AluSc SINE Alu 1 304 -5 2154 103 0 7 chr12 51788655 51788956 -92493533 + AluSx SINE Alu 1 299 -13 1647 163 10 28 chr12 51788956 51789139 -92493350 + AluSx SINE Alu 137 316 0 799 157 140 72 chr12 51789481 51789717 -92492772 - L1M4 LINE L1 -2099 4047 3796 678 236 139 107 chr12 51789841 51790099 -92492390 + MLT1H1 LTR MaLR 3 251 -304 756 155 9 0 chr12 51790099 51790215 -92492274 - FLAM_C SINE Alu -16 117 1 678 236 139 107 chr12 51790215 51790521 -92491968 + MLT1H1 LTR MaLR 251 555 0 2298 86 0 3 chr12 51790561 51790865 -92491624 - AluY SINE Alu -8 303 1 1384 179 22 58 chr12 51790977 51791290 -92491199 - AluJo SINE Alu -10 302 1 1907 146 0 25 chr12 51791342 51791657 -92490832 + AluSg SINE Alu 1 307 -3 2205 97 3 0 chr12 51792050 51792348 -92490141 + AluSp SINE Alu 1 299 -14 372 83 0 0 chr12 51792356 51792404 -92490085 + Alu SINE Alu 1 48 -260 2072 107 20 0 chr12 51792434 51792733 -92489756 - AluSc SINE Alu -4 305 1 811 153 0 0 chr12 51792743 51792867 -92489622 - AluSq/x SINE Alu -188 124 1 1133 137 0 11 chr12 51792882 51793065 -92489424 + FRAM SINE Alu 1 176 0 1498 159 9 61 chr12 51793144 51793470 -92489019 + AluJo SINE Alu 2 310 -2 1677 163 18 3 chr12 51793555 51793838 -92488651 + AluJb SINE Alu 5 291 -21 2094 116 0 6 chr12 51793846 51794157 -92488332 + AluSc SINE Alu 1 309 0 551 238 97 63 chr12 51794392 51794598 -92487891 - MLT1F1 LTR MaLR -258 309 97 2131 104 0 0 chr12 51794602 51794916 -92487573 + AluSq SINE Alu 1 314 0 1671 150 35 0 chr12 51795176 51795462 -92487027 + AluJb SINE Alu 1 296 -16 1120 160 86 115 chr12 51795730 51795795 -92486694 - L1MB8 LINE L1 -5 6173 6108 2169 105 13 0 chr12 51795795 51796099 -92486390 + AluSx SINE Alu 1 308 -4 1120 160 86 115 chr12 51796099 51796377 -92486112 - L1MB8 LINE L1 -70 6108 5843 3474 169 47 77 chr12 51796482 51796790 -92485699 - L1MB7 LINE L1 -25 6159 5843 1997 130 13 0 chr12 51796790 51797089 -92485400 - AluSx SINE Alu -9 303 1 3474 169 47 77 chr12 51797089 51797165 -92485324 - L1MB7 LINE L1 -341 5843 5766 2014 114 0 0 chr12 51797165 51797446 -92485043 - AluSg SINE Alu -29 281 1 3474 169 47 77 chr12 51797446 51797954 -92484535 - L1MB7 LINE L1 -418 5766 5287 1963 116 3 27 chr12 51797968 51798269 -92484220 + AluSx SINE Alu 1 294 -18 800 122 9 0 chr12 51798269 51798384 -92484105 - AluJb SINE Alu -196 116 1 377 132 66 0 chr12 51798387 51798463 -92484026 - L1MB7 LINE L1 -830 5316 5236 3164 129 50 42 chr12 51798469 51799011 -92483478 - MER21A LTR ERV1 -7 924 379 1063 155 134 29 chr12 51799019 51799104 -92483385 - MER21A LTR ERV1 -667 264 189 2032 120 0 22 chr12 51799104 51799420 -92483069 + AluSx SINE Alu 1 309 -3 1063 155 134 29 chr12 51799420 51799573 -92482916 - MER21A LTR ERV1 -742 189 1 1013 160 5 10 chr12 51799573 51799767 -92482722 - L1MB7 LINE L1 -903 5243 5051 2139 79 0 54 chr12 51799767 51799902 -92482587 + AluSq SINE Alu 1 142 -171 2227 112 0 0 chr12 51799902 51800207 -92482282 + AluSg SINE Alu 1 305 -5 2139 79 0 54 chr12 51800207 51800386 -92482103 + AluSq SINE Alu 142 298 -15 1285 201 28 98 chr12 51800461 51800860 -92481629 - L2 LINE L2 -756 2558 2188 2212 83 0 3 chr12 51800869 51801170 -92481319 - AluY SINE Alu -11 300 1 1981 137 0 3 chr12 51801216 51801515 -92480974 - AluSx SINE Alu -12 300 3 348 149 103 28 chr12 51801538 51801645 -92480844 - Charlie2 DNA MER1_type 0 2862 2748 621 194 167 0 chr12 51801651 51801795 -92480694 + AluJo SINE Alu 44 211 -101 258 219 0 0 chr12 51801795 51801859 -92480630 + (TA)n Simple_repeat Simple_repeat 1 64 0 1753 170 0 0 chr12 51801894 51802176 -92480313 + AluJo SINE Alu 1 282 -30 453 189 63 18 chr12 51802194 51802305 -92480184 - Charlie2 DNA MER1_type -137 2725 2610 355 296 96 16 chr12 51802307 51802432 -92480057 + L1MEd LINE L1 1 135 -5984 1534 150 55 22 chr12 51802499 51802800 -92479689 - AluJo SINE Alu 0 310 1 1486 194 17 0 chr12 51802894 51803193 -92479296 + AluJo SINE Alu 1 304 -8 2222 86 0 13 chr12 51803211 51803515 -92478974 + AluY SINE Alu 1 300 -11 1109 119 0 0 chr12 51803665 51803825 -92478664 + AluSg/x SINE Alu 141 300 -12 837 161 13 7 chr12 51803828 51803983 -92478506 + AluJo/FRAM SINE Alu 137 292 -20 932 130 43 16 chr12 51803983 51804167 -92478322 - L1M4 LINE L1 -1001 5145 4957 1916 192 66 21 chr12 51804167 51804604 -92477885 - MLT1C LTR MaLR 0 467 11 466 153 0 0 chr12 51804611 51804683 -92477806 - L1M4 LINE L1 -1185 4961 4890 * 2456 175 31 31 chr12 51804681 51805034 -92477455 - L1MDa LINE L1 -6056 484 129 2061 121 14 0 chr12 51805034 51805331 -92477158 - AluSx SINE Alu -11 301 1 2456 175 31 31 chr12 51805331 51805433 -92477056 - L1MDa LINE L1 -6410 130 29 311 249 97 55 chr12 51805433 51805598 -92476891 - L1M4 LINE L1 -1556 4590 4419 487 192 224 60 chr12 51805612 51805893 -92476596 + MER4C LTR ERV1 1 327 -138 844 114 0 0 chr12 51805894 51806008 -92476481 + AluSq/x SINE Alu 2 115 -197 1662 103 119 100 chr12 51806086 51806272 -92476217 - MER51B LTR ERV1 0 377 196 2041 123 0 16 chr12 51806272 51806582 -92475907 + AluSx SINE Alu 5 309 -3 1662 103 119 100 chr12 51806582 51806765 -92475724 - MER51B LTR ERV1 -181 196 1 2834 126 73 22 chr12 51806765 51806903 -92475586 - LTR62 LTR ERVK -6 713 583 3668 177 49 25 chr12 51806903 51807358 -92475131 + MER50 LTR ERV1 1 444 -290 1760 130 0 71 chr12 51807358 51807495 -92474994 + AluSx SINE Alu 1 146 -166 2413 70 0 0 chr12 51807495 51807797 -92474692 + AluY SINE Alu 1 302 -9 2179 101 0 10 chr12 51807804 51808112 -92474377 + AluY SINE Alu 5 309 -2 1760 130 0 71 chr12 51808112 51808289 -92474200 + AluSx SINE Alu 152 300 -12 3668 177 49 25 chr12 51808289 51808550 -92473939 + MER50 LTR ERV1 444 734 0 2834 126 73 22 chr12 51808550 51808903 -92473586 - LTR62 LTR ERVK -136 583 197 2316 65 0 3 chr12 51808907 51809201 -92473288 - AluSq SINE Alu -20 293 1 2142 77 14 3 chr12 51809208 51809505 -92472984 - AluSx SINE Alu -12 300 1 651 173 128 32 chr12 51809505 51809661 -92472828 - MER21B LTR ERV1 -563 300 130 1782 143 4 0 chr12 51809701 51809967 -92472522 + AluSp SINE Alu 1 267 -46 399 173 12 12 chr12 51809967 51810048 -92472441 + L1MB7 LINE L1 6031 6111 -73 1947 121 3 23 chr12 51810054 51810359 -92472130 + AluSx SINE Alu 1 299 -13 930 159 6 12 chr12 51810409 51810572 -92471917 - AluJb SINE Alu -15 297 136 1204 116 12 0 chr12 51810704 51810877 -92471612 - AluSc SINE Alu -12 297 123 1108 110 0 7 chr12 51811047 51811202 -92471287 - Tigger1 DNA MER2_type -187 2231 2078 351 292 15 23 chr12 51811368 51811498 -92470991 - Charlie2 DNA MER1_type -2661 201 73 1633 164 27 0 chr12 51811518 51811810 -92470679 + AluSq SINE Alu 1 300 -13 327 313 49 41 chr12 51811810 51811987 -92470502 + L1M4 LINE L1 754 928 -5614 2002 135 13 0 chr12 51811987 51812291 -92470198 + AluSx SINE Alu 1 308 -4 327 313 49 41 chr12 51812291 51812401 -92470088 + L1M4 LINE L1 928 972 -5570 1556 124 23 141 chr12 51812401 51812749 -92469740 + AluYb8 SINE Alu 2 308 0 327 313 49 41 chr12 51812749 51812784 -92469705 + L1M4 LINE L1 972 1005 -5537 2191 113 0 7 chr12 51812791 51813101 -92469388 + AluSg SINE Alu 1 308 -2 2193 92 3 3 chr12 51813120 51813424 -92469065 + AluSc SINE Alu 1 304 -5 1858 113 35 0 chr12 51813424 51813706 -92468783 + AluSq SINE Alu 12 303 -10 2522 36 0 16 chr12 51813707 51814015 -92468474 + AluY SINE Alu 1 303 -8 1430 192 78 44 chr12 51814016 51814271 -92468218 + L1M4 LINE L1 3310 3555 -3089 2119 78 3 0 chr12 51814271 51814577 -92467912 + AluSp SINE Alu 1 307 0 1430 192 78 44 chr12 51814577 51814703 -92467786 + L1M4 LINE L1 3555 3675 -2969 1508 161 11 25 chr12 51814703 51815010 -92467479 + AluJb SINE Alu 1 303 0 1430 192 78 44 chr12 51815010 51815040 -92467449 + L1M4 LINE L1 3675 3703 -2941 2158 106 0 7 chr12 51815040 51815343 -92467146 + AluSx SINE Alu 1 301 -11 1430 192 78 44 chr12 51815343 51815368 -92467121 + L1M4 LINE L1 3703 3726 -2918 2463 66 0 0 chr12 51815368 51815672 -92466817 + AluY SINE Alu 1 304 -7 1430 192 78 44 chr12 51815672 51815755 -92466734 + L1M4 LINE L1 3726 3853 -2791 776 169 15 0 chr12 51815757 51815887 -92466602 + AluJb SINE Alu 2 133 -179 2234 218 56 37 chr12 51815888 51816050 -92466439 + L1M4 LINE L1 3843 4000 -2644 1660 169 3 7 chr12 51816050 51816351 -92466138 + AluSx SINE Alu 1 300 -12 2234 218 56 37 chr12 51816351 51816619 -92465870 + L1M4 LINE L1 4000 4261 -2383 1823 144 10 3 chr12 51816619 51816917 -92465572 + AluSx SINE Alu 1 300 -12 2234 218 56 37 chr12 51816917 51817159 -92465330 + L1M4 LINE L1 4261 4529 -2115 687 236 0 0 chr12 51817164 51817308 -92465181 + L1MB7 LINE L1 5747 5890 -294 717 185 71 46 chr12 51817310 51817548 -92464941 + LTR37B LTR ERV1 225 468 0 551 243 14 14 chr12 51817549 51817689 -92464800 - L2 LINE L2 -1854 1460 1321 1355 113 14 32 chr12 51817706 51817755 -92464734 + AluSg/x SINE Alu 87 135 -177 2149 85 0 13 chr12 51817755 51818062 -92464427 + AluY SINE Alu 1 303 -8 1355 113 14 32 chr12 51818062 51818233 -92464256 + AluSg/x SINE Alu 135 303 -9 977 249 188 22 chr12 51818237 51818646 -92463843 - L2 LINE L2 -2004 1310 834 1429 161 36 0 chr12 51818671 51818920 -92463569 - AluJo SINE Alu -20 292 35 2333 73 3 0 chr12 51819156 51819457 -92463032 + AluSp SINE Alu 1 302 -11 1128 129 0 17 chr12 51819457 51819635 -92462854 + AluSg/x SINE Alu 132 306 -3 1425 224 69 58 chr12 51819639 51820072 -92462417 - MER21B LTR ERV1 -411 452 15 854 140 0 22 chr12 51820075 51820211 -92462278 - FLAM_C SINE Alu 0 133 1 198 0 0 0 chr12 51820536 51820558 -92461931 + (TA)n Simple_repeat Simple_repeat 2 23 0 610 213 9 0 chr12 51820568 51820676 -92461813 - FLAM_C SINE Alu -32 111 3 2094 101 0 23 chr12 51820686 51820992 -92461497 - AluSx SINE Alu -13 299 1 935 166 0 4 chr12 51821035 51821244 -92461245 + AluJb SINE Alu 5 295 -17 1777 117 0 0 chr12 51822024 51822272 -92460217 + AluSq SINE Alu 1 248 -65 590 298 6 0 chr12 51822387 51822545 -92459944 + MIR SINE MIR 80 238 -24 22 0 0 0 chr12 51822596 51822618 -92459871 + AT_rich Low_complexity Low_complexity 1 22 0 1664 160 14 3 chr12 51822626 51822913 -92459576 + AluJb SINE Alu 1 290 -22 418 40 162 0 chr12 51822915 51822989 -92459500 + Tigger3(Golem) DNA MER2_type 2431 2516 -513 1883 126 35 0 chr12 51822989 51823275 -92459214 - AluSx SINE Alu -16 296 1 442 149 92 0 chr12 51823275 51823362 -92459127 + Tigger3(Golem) DNA MER2_type 2796 2890 -139 1434 58 16 0 chr12 51823487 51823676 -92458813 - Tigger1 DNA MER2_type -399 2019 1828 2119 84 44 10 chr12 51823681 51823979 -92458510 + AluSx SINE Alu 5 312 0 2721 152 32 11 chr12 51823981 51824443 -92458046 - Tigger1 DNA MER2_type -981 1437 966 2069 124 7 3 chr12 51824453 51824760 -92457729 - AluSx SINE Alu -4 308 1 2171 73 0 11 chr12 51824784 51825102 -92457387 - AluY SINE Alu 0 315 1 757 228 73 119 chr12 51825191 51825560 -92456929 + L2 LINE L2 1105 1456 -1858 659 223 115 122 chr12 51825644 51826070 -92456419 - MLT1J LTR MaLR -53 458 36 2259 89 3 0 chr12 51826120 51826423 -92456066 + AluSp SINE Alu 1 304 -9 575 180 25 49 chr12 51826423 51826538 -92455951 - FLAM_A SINE Alu -188 114 1 3904 248 80 50 chr12 51826551 51827206 -92455283 + L2 LINE L2 1391 2025 -1289 1616 170 37 3 chr12 51827206 51827500 -92454989 - AluJo SINE Alu -8 304 1 3904 248 80 50 chr12 51827500 51827610 -92454879 + L2 LINE L2 2025 2130 -1184 2203 88 7 0 chr12 51827610 51827904 -92454585 - AluSg SINE Alu -12 298 3 3904 248 80 50 chr12 51827904 51828238 -92454251 + L2 LINE L2 2130 2453 -861 1971 104 0 24 chr12 51828238 51828554 -92453935 + AluY SINE Alu 1 309 0 3904 248 80 50 chr12 51828554 51828917 -92453572 + L2 LINE L2 2453 2900 -414 558 190 52 0 chr12 51828919 51829035 -92453454 + L1MCa LINE L1 1 122 -6304 299 170 0 0 chr12 51829046 51829093 -92453396 - MER66B LTR ERV1 -141 345 299 2482 50 0 3 chr12 51829148 51829448 -92453041 + AluY SINE Alu 1 299 -12 1293 202 6 96 chr12 51829456 51829788 -92452701 + AluJo SINE Alu 1 302 0 1950 137 3 3 chr12 51829797 51830103 -92452386 + AluSx SINE Alu 1 306 -6 662 225 50 88 chr12 51830103 51830279 -92452210 + L1M4 LINE L1 3298 3465 -2681 2237 74 0 0 chr12 51830279 51830563 -92451926 + AluY SINE Alu 1 284 -27 662 225 50 88 chr12 51830563 51830638 -92451851 + L1M4 LINE L1 3465 3541 -2605 717 239 135 89 chr12 51830866 51831213 -92451276 - MER21B LTR ERV1 -204 659 297 2051 101 27 0 chr12 51831213 51831509 -92450980 - AluSq SINE Alu -9 304 1 1240 187 63 25 chr12 51831703 51831987 -92450502 + AluJo SINE Alu 1 295 -17 227 328 16 11 chr12 51831987 51832108 -92450381 + GA-rich Low_complexity Low_complexity 1 121 0 1912 119 43 13 chr12 51832108 51832410 -92450079 + AluSx SINE Alu 1 311 -1 537 233 52 23 chr12 51832413 51832585 -92449904 - Tigger1 DNA MER2_type -981 1437 1261 318 274 34 74 chr12 51832970 51833145 -92449344 - L2 LINE L2 -1749 1565 1398 360 268 33 41 chr12 51833165 51833287 -92449202 + FLAM_A SINE Alu 1 113 -20 1239 144 16 103 chr12 51833293 51833612 -92448877 - AluSp SINE Alu -12 291 1 899 114 0 21 chr12 51833659 51833799 -92448690 + Tigger1 DNA MER2_type 55 191 -2227 1058 244 11 11 chr12 51833801 51834084 -92448405 + AluSq SINE Alu 1 283 -30 1036 137 0 49 chr12 51834126 51834309 -92448180 + AluSp SINE Alu 137 310 -3 2129 74 3 11 chr12 51834442 51834756 -92447733 + AluY SINE Alu 1 312 0 1959 112 27 3 chr12 51834783 51835078 -92447411 + AluSx SINE Alu 1 302 -10 3145 119 23 25 chr12 51835079 51835448 -92447041 + Tigger1 DNA MER2_type 181 549 -1869 2165 120 0 0 chr12 51835448 51835749 -92446740 + AluSx SINE Alu 3 303 -9 3145 119 23 25 chr12 51835749 51836082 -92446407 + Tigger1 DNA MER2_type 549 975 -1443 651 199 100 34 chr12 51836083 51836296 -92446193 + AluJo SINE Alu 2 228 -84 1214 156 9 5 chr12 51836438 51836662 -92445827 - AluSg/x SINE Alu -3 309 85 815 118 0 0 chr12 51836662 51836772 -92445717 - AluSq SINE Alu -63 250 141 1036 151 19 122 chr12 51837356 51837457 -92445032 - LTR62 LTR ERVK -430 289 179 1852 72 0 42 chr12 51837457 51837763 -92444726 - AluSq SINE Alu -20 293 1 2332 60 3 3 chr12 51837770 51838070 -92444419 - AluSx SINE Alu -12 300 1 1036 151 19 122 chr12 51838070 51838231 -92444258 - LTR62 LTR ERVK -546 173 47 2268 75 3 41 chr12 51838231 51838551 -92443938 + AluSq SINE Alu 1 308 -5 2016 117 10 3 chr12 51838552 51838842 -92443647 + AluSg SINE Alu 1 292 -18 2288 92 0 0 chr12 51839366 51839670 -92442819 + AluSg SINE Alu 1 304 -6 295 280 0 43 chr12 51839878 51839971 -92442518 - L2 LINE L2 -218 3054 2966 1766 163 3 7 chr12 51840518 51840819 -92441670 - AluJb SINE Alu -12 300 1 1342 142 87 45 chr12 51840865 51840934 -92441555 - L1MB8 LINE L1 0 6178 6113 2390 61 0 16 chr12 51840934 51841246 -92441243 + AluY SINE Alu 2 308 -3 1342 142 87 45 chr12 51841246 51841464 -92441025 - L1MB8 LINE L1 -65 6113 5879 2216 112 0 3 chr12 51841610 51841922 -92440567 + AluSq SINE Alu 1 311 -2 306 134 0 0 chr12 51842048 51842115 -92440374 + (GA)n Simple_repeat Simple_repeat 2 68 0 1690 179 3 6 chr12 51842437 51842749 -92439740 + AluJo SINE Alu 1 311 -1 736 307 94 37 chr12 51842875 51843279 -92439210 - MLT1K LTR MaLR -159 429 3 1205 185 0 0 chr12 51843369 51843596 -92438893 + AluJo SINE Alu 82 308 -4 500 317 27 33 chr12 51843645 51843828 -92438661 - L2 LINE L2 -81 3191 3010 1534 194 20 7 chr12 51843875 51844174 -92438315 - AluJb SINE Alu -9 303 1 856 147 0 22 chr12 51844181 51844379 -92438110 - FLAM_C SINE Alu 0 195 1 242 303 141 17 chr12 51844387 51844621 -92437868 + L2 LINE L2 2694 2956 -358 2072 86 28 17 chr12 51844675 51844966 -92437523 - AluSg SINE Alu -15 295 2 192 273 45 68 chr12 51845100 51845188 -92437301 + L2 LINE L2 3227 3312 -1 2004 122 7 3 chr12 51845479 51845782 -92436707 + AluSx SINE Alu 1 304 -8 2409 68 13 0 chr12 51845829 51846137 -92436352 + AluSp SINE Alu 1 312 -1 264 350 16 0 chr12 51846248 51846371 -92436118 + MIR3 SINE MIR 71 195 -13 2160 106 7 0 chr12 51846624 51846925 -92435564 + AluSx SINE Alu 1 303 -9 585 230 121 12 chr12 51848154 51848319 -92434170 - MIR SINE MIR -54 208 26 2066 104 4 0 chr12 51848530 51848809 -92433680 - AluSx SINE Alu -32 280 1 207 0 0 0 chr12 51849011 51849034 -92433455 + (TG)n Simple_repeat Simple_repeat 1 23 0 1869 126 17 27 chr12 51849109 51849410 -92433079 - AluSg SINE Alu 0 310 13 380 270 127 48 chr12 51850155 51850344 -92432145 + MIR SINE MIR 34 237 -25 1602 155 10 27 chr12 51850498 51850794 -92431695 - AluJo SINE Alu -9 303 13 189 262 93 93 chr12 51850811 51850918 -92431571 - L2 LINE L2 -15 3298 3192 410 94 16 0 chr12 51851013 51851077 -92431412 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 691 159 0 0 chr12 51851077 51851184 -92431305 - FLAM_C SINE Alu -35 108 2 23 33 0 0 chr12 51853996 51854026 -92428463 + GC_rich Low_complexity Low_complexity 1 30 0 186 40 0 0 chr12 51854151 51854159 -92428330 + (A)n Simple_repeat Simple_repeat 1 8 -17 2236 68 7 0 chr12 51854159 51854451 -92428038 - AluSq SINE Alu -19 294 1 186 40 0 0 chr12 51854451 51854467 -92428022 + (A)n Simple_repeat Simple_repeat 7 25 0 2017 97 20 13 chr12 51854788 51855087 -92427402 + AluSx SINE Alu 1 301 -11 1816 161 20 37 chr12 51855941 51856294 -92426195 - MER7A DNA MER2_type -1 345 1 2222 89 13 0 chr12 51856473 51856776 -92425713 + AluSp SINE Alu 1 307 -6 1788 145 23 7 chr12 51856796 51857099 -92425390 + AluJo SINE Alu 1 308 -4 191 119 71 0 chr12 51857119 51857161 -92425328 + GA-rich Low_complexity Low_complexity 2 46 0 2065 125 0 0 chr12 51857164 51857460 -92425029 + AluSq SINE Alu 3 298 -15 1724 163 91 39 chr12 51857623 51857984 -92424505 - MER21B LTR ERV1 -20 843 464 405 143 0 95 chr12 51858001 51858085 -92424404 - AluJo SINE Alu -174 138 63 1805 168 67 21 chr12 51858104 51858432 -92424057 - MER21B LTR ERV1 -387 476 134 310 220 9 31 chr12 51858564 51858670 -92423819 - MER21A LTR ERV1 -758 105 1 2200 119 0 0 chr12 51858694 51859004 -92423485 + AluSx SINE Alu 1 310 -2 614 191 16 8 chr12 51859013 51859139 -92423350 + FLAM_A SINE Alu 1 127 -6 390 21 0 0 chr12 51859366 51859413 -92423076 + (CA)n Simple_repeat Simple_repeat 1 47 0 201 74 0 0 chr12 51859632 51859659 -92422830 + (A)n Simple_repeat Simple_repeat 1 27 0 1654 161 0 27 chr12 51859932 51860231 -92422258 - AluJb SINE Alu -21 291 1 2129 112 0 0 chr12 51860242 51860537 -92421952 - AluSx SINE Alu -17 295 1 247 289 164 23 chr12 51860540 51860668 -92421821 + L2 LINE L2 3124 3269 -44 258 136 0 0 chr12 51860938 51860982 -92421507 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 1905 129 20 3 chr12 51860982 51861285 -92421204 - AluSx SINE Alu -4 308 1 2188 116 0 3 chr12 51861316 51861626 -92420863 - AluSq SINE Alu -4 309 1 483 190 100 0 chr12 51861676 51861776 -92420713 - Charlie2a DNA MER1_type -1230 1632 1523 1740 143 0 62 chr12 51861801 51862123 -92420366 - AluJo SINE Alu -10 302 1 1712 164 0 13 chr12 51862144 51862443 -92420046 - AluJb SINE Alu -17 295 1 1854 130 20 3 chr12 51862499 51862792 -92419697 + AluSx SINE Alu 1 298 -14 607 167 0 0 chr12 51862935 51863037 -92419452 - AluJb SINE Alu 0 312 211 351 292 15 23 chr12 51863053 51863183 -92419306 - Charlie2 DNA MER1_type -2581 201 73 1880 159 0 0 chr12 51863203 51863511 -92418978 + AluSx SINE Alu 1 308 -4 469 129 0 0 chr12 51863900 51863970 -92418519 - AluSp/q SINE Alu -14 299 230 373 263 64 51 chr12 51864239 51864395 -92418094 - MIR SINE MIR -79 183 26 218 337 12 12 chr12 51864395 51864481 -92418008 - L2 LINE L2 -1395 1919 1834 377 267 42 96 chr12 51864528 51864654 -92417835 + L1M4b LINE L1 20 128 -6731 1523 143 19 30 chr12 51864654 51864920 -92417569 + AluJo SINE Alu 1 263 -49 377 267 42 96 chr12 51864920 51865033 -92417456 + L1M4b LINE L1 128 246 -6613 2064 122 3 3 chr12 51865237 51865540 -92416949 - AluSx SINE Alu -9 303 1 379 169 17 0 chr12 51865555 51865614 -92416875 - AluS SINE Alu -242 60 1 2379 75 0 3 chr12 51865731 51866060 -92416429 + AluY SINE Alu 1 311 0 313 281 137 38 chr12 51866065 51866328 -92416161 + L2 LINE L2 1796 2084 -1230 2269 94 0 3 chr12 51866385 51866693 -92415796 - AluSq SINE Alu -6 307 1 675 249 28 48 chr12 51867178 51867378 -92415111 + MLT1L LTR MaLR 362 558 -57 1614 184 34 0 chr12 51867378 51867671 -92414818 - AluJb SINE Alu -9 303 1 675 249 28 48 chr12 51867671 51867719 -92414770 + MLT1L LTR MaLR 558 605 -10 2237 67 3 0 chr12 51867719 51868027 -92414462 + AluY SINE Alu 1 309 0 580 303 137 47 chr12 51868068 51868206 -92414283 + L2 LINE L2 2266 2390 -924 662 231 15 0 chr12 51868206 51868336 -92414153 - FLAM_A SINE Alu -1 132 1 580 303 137 47 chr12 51868336 51868663 -92413826 + L2 LINE L2 2390 2773 -541 1754 142 20 23 chr12 51868668 51868971 -92413518 + AluJo SINE Alu 1 302 -10 956 130 74 2 chr12 51868972 51869203 -92413286 + AluSx SINE Alu 3 301 -9 26 0 0 0 chr12 51869203 51869229 -92413260 + AT_rich Low_complexity Low_complexity 1 26 0 474 310 92 67 chr12 51869273 51869676 -92412813 + L2 LINE L2 2813 3225 -47 1755 156 13 3 chr12 51869774 51870082 -92412407 - AluJo SINE Alu -1 311 1 247 356 18 37 chr12 51870143 51870306 -92412183 - L2 LINE L2 -634 2680 2521 1833 154 7 0 chr12 51870313 51870606 -92411883 + AluJo SINE Alu 3 297 -15 725 187 7 36 chr12 51870606 51870745 -92411744 + AluJo SINE Alu 2 136 -176 2155 81 0 3 chr12 51870752 51871035 -92411454 + AluY SINE Alu 1 282 -29 1977 99 3 18 chr12 51871061 51871343 -92411146 + AluSq SINE Alu 1 278 -35 1587 99 4 17 chr12 51871477 51871710 -92410779 - AluSq SINE Alu -81 232 3 2065 117 3 13 chr12 51871732 51872041 -92410448 - AluSx SINE Alu 0 312 7 216 0 0 0 chr12 51872065 51872089 -92410400 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1768 153 0 7 chr12 51872089 51872376 -92410113 - AluJb SINE Alu -27 285 1 439 238 107 50 chr12 51872462 51872686 -92409803 - L1MC5 LINE L1 -195 7766 7519 2042 128 0 3 chr12 51872686 51872999 -92409490 - AluSx SINE Alu 0 312 1 439 238 107 50 chr12 51872999 51873072 -92409417 - L1MC5 LINE L1 -442 7519 7452 265 151 0 38 chr12 51873085 51873127 -92409362 + MSTA LTR MaLR 1 42 -386 2013 62 0 4 chr12 51873127 51873384 -92409105 + L1PA12 LINE L1 5912 6167 -1 1946 125 7 14 chr12 51873394 51873681 -92408808 + AluSx SINE Alu 1 285 -27 24 41 0 20 chr12 51873681 51873695 -92408794 + AT_rich Low_complexity Low_complexity 1 14 -34 2189 98 3 3 chr12 51873695 51874000 -92408489 + AluSp SINE Alu 1 305 -8 24 41 0 20 chr12 51874000 51874034 -92408455 + AT_rich Low_complexity Low_complexity 14 48 0 2244 110 0 0 chr12 51874050 51874360 -92408129 + AluSg SINE Alu 1 310 0 2156 150 80 8 chr12 51874361 51874734 -92407755 + MSTA LTR MaLR 29 428 0 331 264 58 8 chr12 51874739 51874860 -92407629 - L1MC5 LINE L1 -524 7437 7311 1278 225 66 81 chr12 51875017 51875533 -92406956 - L1MC5 LINE L1 -725 7236 6729 1029 139 50 5 chr12 51875593 51875794 -92406695 - L1MC3 LINE L1 0 7785 7576 2050 117 6 25 chr12 51875799 51876115 -92406374 - AluSx SINE Alu -2 310 1 1904 110 18 0 chr12 51876144 51876426 -92406063 - AluSg SINE Alu -8 302 16 478 135 10 21 chr12 51876426 51876482 -92406007 + CT-rich Low_complexity Low_complexity 2 58 -38 2117 88 6 47 chr12 51876482 51876799 -92405690 - AluSc SINE Alu -5 304 1 478 135 10 21 chr12 51876799 51876838 -92405651 + CT-rich Low_complexity Low_complexity 58 96 0 970 235 23 0 chr12 51877118 51877335 -92405154 + MIR SINE MIR 41 262 0 801 163 8 0 chr12 51877837 51877988 -92404501 - AluJb SINE Alu 0 305 154 2047 114 0 29 chr12 51878033 51878349 -92404140 - AluSx SINE Alu -5 307 1 880 197 50 50 chr12 51878351 51878549 -92403940 + MER63A DNA MER1_type 11 208 -2 1854 146 3 3 chr12 51879323 51879610 -92402879 + AluSx SINE Alu 1 287 -25 2091 100 0 0 chr12 51879750 51880063 -92402426 - AluSx SINE Alu 0 315 3 910 113 0 0 chr12 51880088 51880212 -92402277 - AluJb SINE Alu -188 124 1 1461 186 99 36 chr12 51880212 51880479 -92402010 + L1MC4 LINE L1 7352 7650 -392 2172 97 0 0 chr12 51880479 51880777 -92401712 + AluSc SINE Alu 1 298 -11 1461 186 99 36 chr12 51880777 51880874 -92401615 + L1MC4 LINE L1 7650 7739 -303 2335 194 32 50 chr12 51880874 51881430 -92401059 - MLT2B3 LTR ERVL -8 546 1 2001 113 0 3 chr12 51881468 51881784 -92400705 + AluSx SINE Alu 1 315 0 286 197 127 0 chr12 51881785 51881856 -92400633 + L1MC4 LINE L1 7832 7911 -131 1947 110 50 0 chr12 51882031 51882313 -92400176 + AluSp SINE Alu 1 296 -17 2489 65 0 0 chr12 51882315 51882625 -92399864 + AluY SINE Alu 1 310 -1 453 219 16 57 chr12 51882626 51882749 -92399740 + L1ME3A LINE L1 4146 4263 -1883 1641 134 58 0 chr12 51882817 51883078 -92399411 + AluSx SINE Alu 1 276 -36 2068 95 7 3 chr12 51883097 51883426 -92399063 + AluSx SINE Alu 1 330 0 1766 125 3 62 chr12 51883436 51883581 -92398908 + AluSx SINE Alu 1 153 -159 2101 107 7 0 chr12 51883581 51883881 -92398608 + AluSx SINE Alu 1 302 -10 2242 100 0 0 chr12 51883883 51884192 -92398297 + AluSc SINE Alu 1 309 0 1766 125 3 62 chr12 51884192 51884348 -92398141 + AluSx SINE Alu 154 287 -25 189 0 0 0 chr12 51884356 51884377 -92398112 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 550 267 68 80 chr12 51884404 51884535 -92397954 + L1ME3A LINE L1 5258 5389 -781 2109 117 0 0 chr12 51884535 51884835 -92397654 + AluSx SINE Alu 1 300 -12 550 267 68 80 chr12 51884835 51885036 -92397453 + L1ME3A LINE L1 5389 5591 -579 580 188 70 39 chr12 51885036 51885164 -92397325 - FLAM_A SINE Alu 0 133 2 550 267 68 80 chr12 51885164 51885459 -92397030 + L1ME3A LINE L1 5591 5885 -285 806 139 0 0 chr12 51885471 51885593 -92396896 + FLAM_C SINE Alu 6 127 -16 24 0 0 29 chr12 51885596 51885613 -92396876 + AT_rich Low_complexity Low_complexity 1 17 -17 1793 138 14 14 chr12 51885613 51885902 -92396587 - AluSx SINE Alu -23 289 1 24 0 0 29 chr12 51885902 51885919 -92396570 + AT_rich Low_complexity Low_complexity 17 34 0 198 339 121 48 chr12 51885991 51886115 -92396374 - L2 LINE L2 0 3272 3140 362 235 37 111 chr12 51886438 51886635 -92395854 - L2 LINE L2 -568 2746 2564 2251 107 3 0 chr12 51886651 51886961 -92395528 + AluSx SINE Alu 1 311 -1 348 161 0 0 chr12 51886963 51887025 -92395464 + GA-rich Low_complexity Low_complexity 1 62 0 257 100 0 20 chr12 51887166 51887216 -92395273 + Alu SINE Alu 252 300 -1 488 209 0 0 chr12 51887219 51887310 -92395179 - L1MC4 LINE L1 -1254 6788 6698 4728 188 21 46 chr12 51887314 51887392 -92395097 - L1 LINE L1 -2444 3702 3624 7761 28 5 0 chr12 51887392 51889076 -92393413 + L1PA4 LINE L1 4468 6155 0 4728 188 21 46 chr12 51889076 51889146 -92393343 - L1 LINE L1 -2522 3624 3554 617 195 57 16 chr12 51889146 51889269 -92393220 - FLAM_A SINE Alu -5 128 1 1787 162 44 3 chr12 51889272 51889448 -92393041 - AluSx SINE Alu -3 309 115 252 0 0 0 chr12 51889448 51889476 -92393013 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1787 162 44 3 chr12 51889476 51889596 -92392893 - AluSx SINE Alu -197 115 1 4728 188 21 46 chr12 51889596 51890238 -92392251 - L1 LINE L1 -2594 3552 2952 1769 146 0 11 chr12 51890238 51890518 -92391971 - AluSx SINE Alu -1 311 35 4728 188 21 46 chr12 51890518 51891058 -92391431 - L1 LINE L1 -3194 2952 2400 823 193 27 5 chr12 51891066 51891298 -92391191 + L1M2 LINE L1 4454 4710 -1436 * 2040 138 12 48 chr12 51891280 51891637 -92390852 + L1M2 LINE L1 5047 5371 -941 1607 175 3 21 chr12 51891637 51891956 -92390533 - AluSg SINE Alu 0 314 1 2040 138 12 48 chr12 51891956 51892250 -92390239 + L1M2 LINE L1 5371 5674 -638 2179 111 0 3 chr12 51892251 51892548 -92389941 + AluSx SINE Alu 1 296 -16 1838 183 63 50 chr12 51892549 51893085 -92389404 + MLT1-int LTR MaLR 118 660 -711 1615 158 7 7 chr12 51893247 51893525 -92388964 - AluSx SINE Alu -21 291 14 2222 89 6 6 chr12 51893544 51893857 -92388632 - AluSp SINE Alu 0 313 1 592 215 28 177 chr12 51893870 51894006 -92388483 + MIR SINE MIR 18 173 -89 2266 94 10 0 chr12 51894006 51894313 -92388176 - AluSg SINE Alu 0 310 1 592 215 28 177 chr12 51894313 51894359 -92388130 + MIR SINE MIR 173 145 -117 1900 157 3 3 chr12 51894359 51894665 -92387824 + AluJb SINE Alu 1 306 -6 592 215 28 177 chr12 51894665 51894769 -92387720 + MIR SINE MIR 144 262 0 2375 90 0 0 chr12 51894932 51895242 -92387247 - AluY SINE Alu -1 310 1 21 36 0 0 chr12 51895242 51895270 -92387219 + AT_rich Low_complexity Low_complexity 1 28 0 1519 157 0 28 chr12 51895417 51895672 -92386817 + AluJo SINE Alu 49 296 -16 1864 154 23 3 chr12 51896116 51896415 -92386074 + AluSx SINE Alu 1 305 -7 373 307 30 24 chr12 51896719 51896885 -92385604 + MIR3 SINE MIR 37 203 -5 2334 78 3 25 chr12 51897136 51897455 -92385034 - AluSq SINE Alu -1 312 1 1897 145 0 25 chr12 51898325 51898465 -92384024 + AluJo SINE Alu 1 143 -169 2225 80 7 10 chr12 51898465 51898766 -92383723 + AluSg1 SINE Alu 1 300 -9 1897 145 0 25 chr12 51898766 51898942 -92383547 + AluJo SINE Alu 143 309 -3 811 182 6 25 chr12 51899482 51899641 -92382848 + AluJb SINE Alu 126 281 -31 403 279 23 39 chr12 51899643 51899772 -92382717 - L1MC4 LINE L1 -1339 6703 6577 873 160 18 12 chr12 51899975 51900144 -92382345 - MLT1C LTR MaLR 0 467 298 1992 126 0 7 chr12 51900334 51900619 -92381870 - AluSq SINE Alu -17 296 14 2213 89 3 6 chr12 51900638 51900952 -92381537 - AluSp SINE Alu 0 313 1 586 167 42 0 chr12 51901013 51901109 -92381380 - FLAM_C SINE Alu -15 128 29 1063 138 85 5 chr12 51901124 51901312 -92381177 + AluJo SINE Alu 85 287 -25 184 337 45 11 chr12 51901322 51901411 -92381078 - L2 LINE L2 -789 2525 2434 1723 119 22 57 chr12 51901841 51902159 -92380330 - AluJo SINE Alu -3 309 3 669 215 0 0 chr12 51903569 51903718 -92378771 + FLAM_A SINE Alu 1 149 0 206 290 161 37 chr12 51903783 51903945 -92378544 + L2 LINE L2 3122 3303 -10 756 114 34 128 chr12 51903945 51904062 -92378427 + FLAM_C SINE Alu 3 105 -207 1996 131 9 34 chr12 51904062 51904244 -92378245 - AluSx SINE Alu 0 312 140 2204 104 3 25 chr12 51904244 51904562 -92377927 - AluSx SINE Alu -1 311 1 1996 131 9 34 chr12 51904562 51904699 -92377790 - AluSx SINE Alu -172 140 1 756 114 34 128 chr12 51904699 51904730 -92377759 + FLAM_C SINE Alu 105 137 -175 590 315 77 13 chr12 51905761 51905996 -92376493 + MIR SINE MIR 12 261 -1 1284 253 69 50 chr12 51906954 51907131 -92375358 - L2 LINE L2 0 3313 3141 207 0 0 0 chr12 51907131 51907154 -92375335 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1284 253 69 50 chr12 51907154 51907556 -92374933 - L2 LINE L2 -172 3141 2748 2315 90 7 0 chr12 51907556 51907866 -92374623 - AluSp SINE Alu -1 312 1 1284 253 69 50 chr12 51907866 51907926 -92374563 - L2 LINE L2 -565 2748 2653 2397 72 0 0 chr12 51907926 51908230 -92374259 + AluY SINE Alu 1 304 -7 936 146 0 0 chr12 51908891 51909028 -92373461 + AluJo SINE Alu 1 137 -175 624 228 62 27 chr12 51912680 51912885 -92369604 + MIR SINE MIR 8 221 -41 2175 91 24 3 chr12 51912886 51913184 -92369305 - AluSq SINE Alu -9 304 1 2260 88 10 0 chr12 51913258 51913563 -92368926 + AluSp SINE Alu 1 308 -5 269 356 20 10 chr12 51915048 51915149 -92367340 + MIR SINE MIR 45 146 -62 408 20 0 0 chr12 51917063 51917112 -92365377 + (TG)n Simple_repeat Simple_repeat 1 49 0 270 0 0 0 chr12 51917112 51917142 -92365347 + (GA)n Simple_repeat Simple_repeat 1 30 0 192 182 0 0 chr12 51917288 51917332 -92365157 + GA-rich Low_complexity Low_complexity 2 45 0 186 147 29 0 chr12 51919824 51919858 -92362631 + MIR SINE MIR 115 149 -113 514 309 109 5 chr12 51920107 51920308 -92362181 - MIR SINE MIR -6 256 35 222 311 0 0 chr12 51921413 51921474 -92361015 + CT-rich Low_complexity Low_complexity 1 61 0 333 0 0 0 chr12 51923086 51923123 -92359366 + (T)n Simple_repeat Simple_repeat 1 37 0 1678 126 48 38 chr12 51923724 51924017 -92358472 - AluSx SINE Alu -14 298 3 24 0 0 0 chr12 51924413 51924437 -92358052 + GC_rich Low_complexity Low_complexity 1 24 0 181 286 20 0 chr12 51924871 51924920 -92357569 + L2 LINE L2 3256 3305 -8 21 57 0 0 chr12 51925962 51925997 -92356492 + GC_rich Low_complexity Low_complexity 1 35 0 224 241 241 0 chr12 51926373 51926485 -92356004 - MIR3 SINE MIR -22 186 48 1423 207 4 84 chr12 51929284 51929411 -92353078 - L1ME3 LINE L1 -98 6064 5928 2352 94 0 0 chr12 51929411 51929718 -92352771 - AluSx SINE Alu -5 307 1 1423 207 4 84 chr12 51929718 51929833 -92352656 - L1ME3 LINE L1 -234 5928 5805 2418 82 3 0 chr12 51929833 51930139 -92352350 - AluSp SINE Alu -6 307 1 1423 207 4 84 chr12 51930139 51930345 -92352144 - L1ME3 LINE L1 -357 5805 5651 1348 84 0 0 chr12 51931163 51931342 -92351147 - AluSg/x SINE Alu 0 312 134 2248 88 0 3 chr12 51931342 51931638 -92350851 - AluY SINE Alu -12 299 5 183 357 80 22 chr12 51931677 51931776 -92350713 + L2 LINE L2 952 1044 -2270 2151 104 3 0 chr12 51931776 51932063 -92350426 + AluSx SINE Alu 1 288 -24 198 0 0 0 chr12 51932063 51932085 -92350404 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 183 357 80 22 chr12 51932085 51932208 -92350281 + L2 LINE L2 1043 1188 -2126 501 247 63 32 chr12 51932219 51932358 -92350131 - MIR SINE MIR 0 262 116 2311 87 7 3 chr12 51932358 51932668 -92349821 + AluY SINE Alu 1 311 0 501 247 63 32 chr12 51932668 51932686 -92349803 - MIR SINE MIR -146 116 100 229 260 39 58 chr12 51932688 51932792 -92349697 - MIR SINE MIR -133 129 28 519 239 107 51 chr12 51932949 51933183 -92349306 - MIR SINE MIR 0 262 16 212 98 0 24 chr12 51934301 51934342 -92348147 + (TG)n Simple_repeat Simple_repeat 1 40 0 236 109 0 22 chr12 51937930 51937976 -92344513 + (CGGGG)n Simple_repeat Simple_repeat 5 49 0 217 327 106 31 chr12 51939088 51939409 -92343080 + L2 LINE L2 2152 2496 -818 1982 97 6 76 chr12 51939449 51939583 -92342906 + AluSc SINE Alu 1 143 -166 2258 70 3 0 chr12 51939583 51939868 -92342621 + AluSq SINE Alu 1 286 -27 1982 97 6 76 chr12 51939868 51939881 -92342608 + AluSc SINE Alu 143 155 -154 324 0 0 0 chr12 51939881 51939917 -92342572 + (GAA)n Simple_repeat Simple_repeat 2 37 0 2323 67 3 13 chr12 51939923 51940223 -92342266 + AluY SINE Alu 1 297 -14 1982 97 6 76 chr12 51940223 51940397 -92342092 + AluSc SINE Alu 160 307 -2 1029 139 50 5 chr12 51940402 51940603 -92341886 + L1MC3 LINE L1 7576 7785 0 1278 225 66 81 chr12 51940663 51941179 -92341310 + L1MC5 LINE L1 6729 7236 -725 331 264 58 8 chr12 51941336 51941457 -92341032 + L1MC5 LINE L1 7311 7437 -524 2156 150 80 8 chr12 51941462 51941835 -92340654 - MSTA LTR MaLR 0 428 29 2244 110 0 0 chr12 51941836 51942146 -92340343 - AluSg SINE Alu 0 310 1 24 41 0 20 chr12 51942162 51942196 -92340293 + AT_rich Low_complexity Low_complexity 1 35 -13 2189 98 3 3 chr12 51942196 51942501 -92339988 - AluSp SINE Alu -8 305 1 24 41 0 20 chr12 51942501 51942515 -92339974 + AT_rich Low_complexity Low_complexity 35 48 0 1189 130 11 22 chr12 51942515 51942699 -92339790 - AluSg/x SINE Alu -27 285 104 411 103 90 51 chr12 51942800 51942878 -92339611 + AluSg/x SINE Alu 217 297 -13 327 313 49 41 chr12 51942878 51943055 -92339434 + L1M4 LINE L1 754 928 -5614 2002 135 13 0 chr12 51943055 51943359 -92339130 + AluSx SINE Alu 1 308 -4 327 313 49 41 chr12 51943359 51943469 -92339020 + L1M4 LINE L1 928 972 -5570 1556 124 23 141 chr12 51943469 51943817 -92338672 + AluYb8 SINE Alu 2 308 0 327 313 49 41 chr12 51943817 51943852 -92338637 + L1M4 LINE L1 972 1005 -5537 2191 113 0 7 chr12 51943859 51944169 -92338320 + AluSg SINE Alu 1 308 -2 2193 92 3 3 chr12 51944188 51944492 -92337997 + AluSc SINE Alu 1 304 -5 1858 113 35 0 chr12 51944492 51944774 -92337715 + AluSq SINE Alu 12 303 -10 2522 36 0 16 chr12 51944775 51945083 -92337406 + AluY SINE Alu 1 303 -8 1430 192 78 44 chr12 51945084 51945339 -92337150 + L1M4 LINE L1 3310 3555 -3089 2119 78 3 0 chr12 51945339 51945645 -92336844 + AluSp SINE Alu 1 307 0 1430 192 78 44 chr12 51945645 51945771 -92336718 + L1M4 LINE L1 3555 3675 -2969 1508 161 11 25 chr12 51945771 51946078 -92336411 + AluJb SINE Alu 1 303 0 1430 192 78 44 chr12 51946078 51946108 -92336381 + L1M4 LINE L1 3675 3703 -2941 2158 106 0 7 chr12 51946108 51946411 -92336078 + AluSx SINE Alu 1 301 -11 1430 192 78 44 chr12 51946411 51946436 -92336053 + L1M4 LINE L1 3703 3726 -2918 2463 66 0 0 chr12 51946436 51946740 -92335749 + AluY SINE Alu 1 304 -7 1430 192 78 44 chr12 51946740 51946823 -92335666 + L1M4 LINE L1 3726 3853 -2791 776 169 15 0 chr12 51946825 51946955 -92335534 + AluJb SINE Alu 2 133 -179 2234 218 56 37 chr12 51946956 51947118 -92335371 + L1M4 LINE L1 3843 4000 -2644 1660 169 3 7 chr12 51947118 51947419 -92335070 + AluSx SINE Alu 1 300 -12 2234 218 56 37 chr12 51947419 51947687 -92334802 + L1M4 LINE L1 4000 4261 -2383 1823 144 10 3 chr12 51947687 51947985 -92334504 + AluSx SINE Alu 1 300 -12 2234 218 56 37 chr12 51947985 51948227 -92334262 + L1M4 LINE L1 4261 4529 -2115 687 236 0 0 chr12 51948232 51948376 -92334113 + L1MB7 LINE L1 5747 5890 -294 717 185 71 46 chr12 51948378 51948616 -92333873 + LTR37B LTR ERV1 225 468 0 551 243 14 14 chr12 51948617 51948757 -92333732 - L2 LINE L2 -1854 1460 1321 398 41 0 0 chr12 51948774 51948823 -92333666 + AluSg/x SINE Alu 85 133 -167 2383 82 0 0 chr12 51948823 51949151 -92333338 + AluY SINE Alu 1 311 0 313 281 137 38 chr12 51949156 51949419 -92333070 + L2 LINE L2 1796 2084 -1230 2269 94 0 3 chr12 51949476 51949784 -92332705 - AluSq SINE Alu -6 307 1 675 249 28 48 chr12 51950269 51950469 -92332020 + MLT1L LTR MaLR 362 558 -57 1614 181 34 0 chr12 51950469 51950762 -92331727 - AluJo SINE Alu -9 303 1 675 249 28 48 chr12 51950762 51950810 -92331679 + MLT1L LTR MaLR 558 605 -10 2171 78 3 0 chr12 51950810 51951118 -92331371 + AluY SINE Alu 1 309 0 580 303 137 47 chr12 51951159 51951297 -92331192 + L2 LINE L2 2266 2390 -924 662 231 15 0 chr12 51951297 51951427 -92331062 - FLAM_A SINE Alu -1 132 1 580 303 137 47 chr12 51951427 51951754 -92330735 + L2 LINE L2 2390 2773 -541 1754 142 20 23 chr12 51951759 51952062 -92330427 + AluJo SINE Alu 1 302 -10 2239 91 13 3 chr12 51952063 51952370 -92330119 + AluSp SINE Alu 3 312 -1 264 350 16 0 chr12 51952481 51952604 -92329885 + MIR3 SINE MIR 71 195 -13 2160 106 7 0 chr12 51952857 51953158 -92329331 + AluSx SINE Alu 1 303 -9 585 230 121 12 chr12 51954387 51954552 -92327937 - MIR SINE MIR -54 208 26 2066 104 4 0 chr12 51954763 51955042 -92327447 - AluSx SINE Alu -32 280 1 207 0 0 0 chr12 51955244 51955267 -92327222 + (TG)n Simple_repeat Simple_repeat 1 23 0 1869 126 17 27 chr12 51955342 51955643 -92326846 - AluSg SINE Alu 0 310 13 380 270 127 48 chr12 51956388 51956577 -92325912 + MIR SINE MIR 34 237 -25 1602 155 10 27 chr12 51956731 51957027 -92325462 - AluJo SINE Alu -9 303 13 189 262 93 93 chr12 51957044 51957151 -92325338 - L2 LINE L2 -15 3298 3192 410 94 16 0 chr12 51957246 51957310 -92325179 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 691 159 0 0 chr12 51957310 51957417 -92325072 - FLAM_C SINE Alu -35 108 2 23 33 0 0 chr12 51960230 51960260 -92322229 + GC_rich Low_complexity Low_complexity 1 30 0 933 81 0 15 chr12 51960393 51960529 -92321960 - AluSp/q SINE Alu -19 294 161 195 277 0 0 chr12 51960634 51960699 -92321790 + MIR SINE MIR 137 201 -61 311 53 0 0 chr12 51960723 51960761 -92321728 - LTR9 LTR ERV1 0 612 575 385 75 0 0 chr12 51960761 51960814 -92321675 - LTR9 LTR ERV1 -559 53 1 1746 133 0 7 chr12 51960859 51961129 -92321360 + AluJb SINE Alu 1 268 -44 22 0 0 0 chr12 51961593 51961615 -92320874 + AT_rich Low_complexity Low_complexity 1 22 0 2212 91 16 0 chr12 51961618 51961926 -92320563 - AluSp SINE Alu 0 313 1 23 0 0 0 chr12 51961931 51961954 -92320535 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr12 51963499 51963534 -92318955 + AT_rich Low_complexity Low_complexity 1 35 0 283 264 110 0 chr12 51963751 51963842 -92318647 + MER5A DNA MER1_type 89 189 0 2036 119 0 3 chr12 51964000 51964294 -92318195 + AluSx SINE Alu 1 293 -19 210 192 178 0 chr12 51964387 51964460 -92318029 + MIR SINE MIR 177 262 0 297 0 0 0 chr12 51964471 51964504 -92317985 + (TA)n Simple_repeat Simple_repeat 2 34 0 2065 136 0 0 chr12 51964504 51964812 -92317677 - AluSx SINE Alu -4 308 1 1592 133 6 79 chr12 51965659 51965975 -92316514 + AluJb SINE Alu 1 293 -19 276 324 128 0 chr12 51966873 51967052 -92315437 + L2 LINE L2 1901 2102 -1212 2012 110 3 3 chr12 51967061 51967393 -92315096 - AluSx SINE Alu 0 332 1 1630 167 7 7 chr12 51967404 51967691 -92314798 - AluJo SINE Alu -25 287 1 2205 102 3 0 chr12 51967707 51968001 -92314488 - AluSx SINE Alu -17 295 1 238 310 152 79 chr12 51968377 51968479 -92314010 + L2 LINE L2 2367 2460 -854 1385 177 89 3 chr12 51968479 51968761 -92313728 + AluJo SINE Alu 1 306 -6 238 310 152 79 chr12 51968761 51968974 -92313515 + L2 LINE L2 2460 2705 -609 1686 174 0 19 chr12 51969002 51969313 -92313176 - AluJo SINE Alu -7 305 1 1730 130 48 0 chr12 51969346 51969616 -92312873 + AluSp SINE Alu 1 283 -30 234 62 0 0 chr12 51969616 51969648 -92312841 + (TC)n Simple_repeat Simple_repeat 1 32 0 192 77 0 0 chr12 51969648 51969674 -92312815 + (TA)n Simple_repeat Simple_repeat 1 26 0 1932 107 4 4 chr12 51969954 51970257 -92312232 + AluSx SINE Alu 14 316 0 2139 113 3 0 chr12 51970349 51970651 -92311838 + AluSq SINE Alu 1 303 -10 828 145 0 0 chr12 51970665 51970789 -92311700 + FLAM_A SINE Alu 2 125 -8 962 286 89 39 chr12 51970807 51971141 -92311348 - L2 LINE L2 -1071 2243 1879 1711 141 52 0 chr12 51971141 51971440 -92311049 + AluSx SINE Alu 1 313 0 962 286 89 39 chr12 51971440 51971544 -92310945 - L2 LINE L2 -1435 1879 1782 197 300 146 27 chr12 51971676 51971786 -92310703 + L2 LINE L2 3147 3269 -3 1774 140 3 14 chr12 51971808 51972094 -92310395 - AluSx SINE Alu -23 289 7 702 200 8 0 chr12 51972097 51972227 -92310262 - AluSq/x SINE Alu -173 139 9 2127 123 3 0 chr12 51972283 51972666 -92309823 + AluSx SINE Alu 1 384 0 185 279 15 59 chr12 51972681 51972749 -92309740 - L2 LINE L2 -1 3271 3207 21 0 0 0 chr12 51973347 51973368 -92309121 + AT_rich Low_complexity Low_complexity 1 21 0 336 24 0 0 chr12 51976224 51976265 -92306224 + (TG)n Simple_repeat Simple_repeat 1 41 0 225 83 0 0 chr12 51976290 51976326 -92306163 + (TG)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr12 51976410 51976436 -92306053 + GC_rich Low_complexity Low_complexity 1 26 0 241 125 0 54 chr12 51977810 51977866 -92304623 + (CCCCCT)n Simple_repeat Simple_repeat 2 54 0 2143 117 0 0 chr12 51979743 51980050 -92302439 - AluSx SINE Alu -5 307 1 300 159 0 0 chr12 51980624 51980668 -92301821 - MSTA LTR MaLR -2 426 383 1786 126 70 0 chr12 51980668 51980939 -92301550 + AluSc SINE Alu 1 290 -19 2060 128 0 3 chr12 51980951 51981264 -92301225 + AluSx SINE Alu 1 312 0 2744 10 0 0 chr12 51981398 51981705 -92300784 + AluYa5 SINE Alu 1 307 -4 1951 104 48 0 chr12 51981869 51982158 -92300331 + AluSc SINE Alu 1 303 -6 338 287 167 14 chr12 51983064 51983226 -92299263 + MIR SINE MIR 2 185 -77 1701 149 0 4 chr12 51984659 51984927 -92297562 - AluJb SINE Alu -45 267 1 580 198 0 18 chr12 51984944 51985055 -92297434 - FLAM_C SINE Alu -28 115 7 221 226 38 151 chr12 51985798 51985855 -92296634 + MER5A DNA MER1_type 16 57 -132 1307 146 49 94 chr12 51985855 51986163 -92296326 + AluJo SINE Alu 1 294 -18 221 226 38 151 chr12 51986163 51986211 -92296278 + MER5A DNA MER1_type 57 109 -80 962 154 145 26 chr12 51986214 51986448 -92296041 - AluJb SINE Alu -17 295 34 209 250 103 0 chr12 51986459 51986527 -92295962 + MER5A DNA MER1_type 115 189 0 1505 147 30 19 chr12 51986616 51986882 -92295607 + AluJo SINE Alu 9 277 -35 768 160 77 39 chr12 51988162 51988318 -92294171 + FRAM SINE Alu 1 162 -4 300 266 351 0 chr12 51988648 51988802 -92293687 + MIR SINE MIR 33 240 -22 2443 63 13 3 chr12 51989286 51989589 -92292900 - AluY SINE Alu -5 306 1 2061 141 10 10 chr12 51990927 51991225 -92291264 + AluSx SINE Alu 1 298 -14 966 92 17 0 chr12 51991759 51991878 -92290611 + AluSq/x SINE Alu 13 133 -180 1867 106 26 29 chr12 51991895 51992168 -92290321 + AluSx SINE Alu 5 276 -36 213 65 0 0 chr12 51992168 51992199 -92290290 + (TG)n Simple_repeat Simple_repeat 2 32 0 2005 97 71 0 chr12 51992652 51992919 -92289570 - AluSx SINE Alu -25 287 2 1824 128 51 0 chr12 51993457 51993730 -92288759 - AluJb SINE Alu -25 287 1 2367 46 3 30 chr12 51993853 51994157 -92288332 - AluY SINE Alu -15 296 1 506 79 6 121 chr12 51994169 51994334 -92288155 - AluSg/x SINE Alu -23 289 144 24 32 0 0 chr12 51994346 51994377 -92288112 + AT_rich Low_complexity Low_complexity 1 31 0 1734 133 6 79 chr12 51995664 51995980 -92286509 + AluJb SINE Alu 1 293 -19 277 324 128 0 chr12 51996878 51997057 -92285432 + L2 LINE L2 1901 2102 -1212 2168 125 3 3 chr12 51997087 51997398 -92285091 - AluSx SINE Alu -1 311 1 1903 141 3 13 chr12 51997400 51997699 -92284790 - AluJo SINE Alu -16 296 1 2475 77 0 7 chr12 51997714 51998013 -92284476 - AluSp SINE Alu -16 297 1 1725 143 160 6 chr12 51998033 51998189 -92284300 + Tigger3(Golem) DNA MER2_type 2634 2765 -264 2066 122 35 0 chr12 51998189 51998477 -92284012 - AluSx SINE Alu -14 298 1 1725 143 160 6 chr12 51998477 51998663 -92283826 + Tigger3(Golem) DNA MER2_type 2765 3029 0 1555 183 10 27 chr12 51999688 51999988 -92282501 - AluJb SINE Alu -17 295 1 830 154 0 91 chr12 52000022 52000197 -92282292 + FRAM SINE Alu 1 159 -7 402 276 32 8 chr12 52000962 52001085 -92281404 - MIR3 SINE MIR 0 208 83 1733 182 20 3 chr12 52001087 52001383 -92281106 + AluJo SINE Alu 1 301 -11 2367 68 13 16 chr12 52001385 52001696 -92280793 + AluY SINE Alu 1 310 -1 2183 103 7 13 chr12 52001777 52002139 -92280350 - AluSc SINE Alu 0 309 1 1959 147 7 7 chr12 52002141 52002440 -92280049 - AluSx SINE Alu -13 299 1 238 327 65 0 chr12 52002559 52002646 -92279843 - MIR SINE MIR -59 149 67 811 152 0 14 chr12 52002958 52003096 -92279393 - MIR SINE MIR -59 203 68 217 259 94 0 chr12 52003761 52003846 -92278643 + MER5A DNA MER1_type 10 102 -87 394 206 155 162 chr12 52003935 52004348 -92278141 - L1MC4 LINE L1 -1 8041 7632 588 316 50 18 chr12 52004362 52004580 -92277909 - L2 LINE L2 -383 2931 2707 2175 96 0 7 chr12 52004583 52004889 -92277600 - AluSc SINE Alu 0 304 1 251 179 45 30 chr12 52004919 52004986 -92277503 + L1MC4 LINE L1 7508 7575 -467 1068 90 0 0 chr12 52004987 52005120 -92277369 + AluSp SINE Alu 1 133 -180 261 0 0 0 chr12 52005138 52005167 -92277322 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1336 212 89 39 chr12 52005189 52005627 -92276862 - MLT1C LTR MaLR -7 460 1 525 295 217 0 chr12 52005648 52005929 -92276560 + L1MC4 LINE L1 7615 7956 -86 208 67 0 44 chr12 52005986 52006031 -92276458 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 440 152 0 0 chr12 52006034 52006100 -92276389 - FLAM_A SINE Alu -25 117 52 484 165 0 0 chr12 52006362 52006441 -92276048 + AluJ/FRAM SINE Alu 225 303 -9 318 157 0 0 chr12 52006533 52006584 -92275905 - MER66A LTR ERV1 -141 337 287 22 0 0 0 chr12 52006595 52006617 -92275872 + AT_rich Low_complexity Low_complexity 1 22 0 6367 28 0 1 chr12 52007436 52008120 -92274369 + SVA Other Other 703 1385 -1 1865 189 3 0 chr12 52008131 52008438 -92274051 + AluJo SINE Alu 1 308 -4 429 292 7 32 chr12 52008502 52008656 -92273833 + G-rich Low_complexity Low_complexity 3 152 0 2320 105 3 3 chr12 52009011 52009316 -92273173 + AluSp SINE Alu 1 305 -8 1724 191 7 0 chr12 52009352 52009646 -92272843 - AluJb SINE Alu -14 298 3 24 0 0 0 chr12 52009882 52009906 -92272583 + AT_rich Low_complexity Low_complexity 1 24 0 736 171 0 0 chr12 52009919 52010030 -92272459 + AluJb SINE Alu 2 112 -200 2143 104 66 0 chr12 52010030 52010317 -92272172 - AluSx SINE Alu -6 306 1 392 130 14 0 chr12 52010339 52010408 -92272081 + GA-rich Low_complexity Low_complexity 3 72 0 1691 146 33 46 chr12 52010423 52010725 -92271764 - AluJo SINE Alu -13 299 2 1359 254 44 78 chr12 52010772 52011402 -92271087 - MLT1L LTR MaLR -2 613 5 712 165 50 0 chr12 52011593 52011714 -92270775 + FLAM_A SINE Alu 1 127 -6 249 33 0 0 chr12 52011739 52011769 -92270720 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2327 113 0 0 chr12 52011773 52012083 -92270406 + AluSg SINE Alu 1 310 0 2887 10 0 0 chr12 52012217 52012524 -92269965 + AluYa5 SINE Alu 1 307 -4 2095 104 48 0 chr12 52012688 52012977 -92269512 + AluSc SINE Alu 1 303 -6 339 287 167 14 chr12 52013883 52014045 -92268444 + MIR SINE MIR 2 185 -77 1832 149 0 4 chr12 52015478 52015746 -92266743 - AluJb SINE Alu -45 267 1 601 198 0 18 chr12 52015763 52015874 -92266615 - FLAM_C SINE Alu -28 115 7 219 226 38 151 chr12 52016617 52016674 -92265815 + MER5A DNA MER1_type 16 57 -132 1442 146 49 94 chr12 52016674 52016982 -92265507 + AluJo SINE Alu 1 294 -18 219 226 38 151 chr12 52016982 52017030 -92265459 + MER5A DNA MER1_type 57 109 -80 1072 154 145 26 chr12 52017033 52017267 -92265222 - AluJb SINE Alu -17 295 34 208 250 103 0 chr12 52017278 52017346 -92265143 + MER5A DNA MER1_type 115 189 0 1634 147 30 19 chr12 52017435 52017701 -92264788 + AluJo SINE Alu 9 277 -35 768 160 77 39 chr12 52018983 52019139 -92263350 + FRAM SINE Alu 1 162 -4 300 266 351 0 chr12 52019469 52019623 -92262866 + MIR SINE MIR 33 240 -22 2443 63 13 3 chr12 52020107 52020410 -92262079 - AluY SINE Alu -5 306 1 2061 141 10 10 chr12 52021748 52022046 -92260443 + AluSx SINE Alu 1 298 -14 966 92 17 0 chr12 52022580 52022699 -92259790 + AluSq/x SINE Alu 13 133 -180 1902 107 26 26 chr12 52022716 52022988 -92259501 + AluSx SINE Alu 5 276 -36 213 65 0 0 chr12 52022988 52023019 -92259470 + (TG)n Simple_repeat Simple_repeat 2 32 0 2005 97 71 0 chr12 52023472 52023739 -92258750 - AluSx SINE Alu -25 287 2 1824 128 51 0 chr12 52024277 52024550 -92257939 - AluJb SINE Alu -25 287 1 2472 47 3 20 chr12 52024673 52024974 -92257515 - AluY SINE Alu -15 296 1 1584 84 141 46 chr12 52024983 52025245 -92257244 - AluSg SINE Alu -23 287 1 246 219 0 0 chr12 52026235 52026299 -92256190 + GA-rich Low_complexity Low_complexity 3 66 0 341 216 98 78 chr12 52026812 52026856 -92255633 - MIR SINE MIR -3 259 217 2509 54 0 7 chr12 52026856 52027152 -92255337 - AluSc SINE Alu -15 294 1 341 216 98 78 chr12 52027152 52027260 -92255229 - MIR SINE MIR -45 217 104 607 121 0 0 chr12 52027464 52027547 -92254942 + AluS SINE Alu 2 84 -228 200 244 244 22 chr12 52027629 52027719 -92254770 - L2 LINE L2 -1 3312 3203 1077 139 16 37 chr12 52027761 52027775 -92254714 + AluSg/x SINE Alu 121 134 -178 1934 141 30 7 chr12 52027775 52028073 -92254416 + AluSq SINE Alu 1 305 -8 1077 139 16 37 chr12 52028073 52028245 -92254244 + AluSg/x SINE Alu 134 303 -9 980 265 181 12 chr12 52028249 52028657 -92253832 - L2 LINE L2 -2004 1310 834 1553 161 36 0 chr12 52028682 52028931 -92253558 - AluJo SINE Alu -20 292 35 195 300 146 27 chr12 52029324 52029434 -92253055 - L2 LINE L2 -3 3269 3147 956 286 89 39 chr12 52029566 52029670 -92252819 + L2 LINE L2 1782 1879 -1435 1842 141 52 0 chr12 52029670 52029969 -92252520 - AluSx SINE Alu 0 313 1 956 286 89 39 chr12 52029969 52030303 -92252186 + L2 LINE L2 1879 2243 -1071 850 154 0 0 chr12 52030315 52030445 -92252044 - FLAM_A SINE Alu -2 131 2 2287 113 3 0 chr12 52030459 52030761 -92251728 - AluSq SINE Alu -10 303 1 2063 107 4 4 chr12 52030853 52031156 -92251333 - AluSx SINE Alu 0 316 14 192 77 0 0 chr12 52031436 52031462 -92251027 + (TA)n Simple_repeat Simple_repeat 1 26 0 234 62 0 0 chr12 52031462 52031494 -92250995 + (GA)n Simple_repeat Simple_repeat 1 32 0 1981 114 44 0 chr12 52031494 52031765 -92250724 - AluSp SINE Alu -30 283 1 1842 174 0 19 chr12 52031798 52032109 -92250380 + AluJo SINE Alu 1 305 -7 230 310 152 79 chr12 52032137 52032350 -92250139 - L2 LINE L2 -609 2705 2460 1525 177 89 3 chr12 52032350 52032632 -92249857 - AluJo SINE Alu -6 306 1 230 310 152 79 chr12 52032632 52032734 -92249755 - L2 LINE L2 -854 2460 2367 2258 112 3 3 chr12 52033110 52033405 -92249084 + AluSx SINE Alu 1 295 -17 2333 90 10 7 chr12 52033420 52033721 -92248768 + AluSq SINE Alu 1 302 -11 2269 74 10 13 chr12 52034113 52034411 -92248078 - AluSc SINE Alu -12 297 1 1683 160 3 54 chr12 52034418 52034731 -92247758 - AluJb SINE Alu -15 297 1 752 182 0 0 chr12 52034765 52034886 -92247603 - FRAM SINE Alu -12 164 44 2289 82 24 3 chr12 52035103 52035396 -92247093 + AluSp SINE Alu 1 299 -14 234 0 0 0 chr12 52035667 52035693 -92246796 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 633 241 41 41 chr12 52036254 52036449 -92246040 + L3 LINE CR1 900 1094 -483 446 175 34 51 chr12 52036449 52036602 -92245887 + L1MB7 LINE L1 5573 5723 -445 1791 164 23 49 chr12 52036647 52036713 -92245776 + L1MB7 LINE L1 5789 5855 -329 2343 100 13 10 chr12 52036713 52037022 -92245467 - AluSg SINE Alu 0 310 1 1791 164 23 49 chr12 52037022 52037345 -92245144 + L1MB7 LINE L1 5855 6168 -16 915 203 6 0 chr12 52037749 52037907 -92244582 + FRAM SINE Alu 1 159 -7 358 283 35 28 chr12 52037913 52038058 -92244431 - MIR3 SINE MIR -43 165 20 306 309 191 40 chr12 52038088 52038412 -92244077 + L3 LINE CR1 1202 1574 -3 498 204 9 0 chr12 52038581 52038689 -92243800 - AluJb SINE Alu 0 312 204 1287 101 0 6 chr12 52038701 52038879 -92243610 - AluSg/x SINE Alu 0 312 136 2343 118 0 3 chr12 52038881 52039194 -92243295 - AluSx SINE Alu 0 312 1 562 196 10 0 chr12 52039220 52039322 -92243167 + FLAM_C SINE Alu 13 115 -28 1696 158 0 0 chr12 52039528 52039788 -92242701 - AluJb SINE Alu 0 312 53 484 165 0 0 chr12 52040050 52040129 -92242360 + AluJ/FRAM SINE Alu 225 303 -9 318 157 0 0 chr12 52040221 52040272 -92242217 - MER66B LTR ERV1 -141 345 295 22 0 0 0 chr12 52040283 52040305 -92242184 + AT_rich Low_complexity Low_complexity 1 22 0 6367 28 0 1 chr12 52041124 52041808 -92240681 + SVA Other Other 703 1385 -1 1865 189 3 0 chr12 52041819 52042126 -92240363 + AluJo SINE Alu 1 308 -4 429 292 7 32 chr12 52042190 52042344 -92240145 + G-rich Low_complexity Low_complexity 3 152 0 2320 105 3 3 chr12 52042699 52043004 -92239485 + AluSp SINE Alu 1 305 -8 1724 191 7 0 chr12 52043040 52043334 -92239155 - AluJb SINE Alu -14 298 3 24 0 0 0 chr12 52043570 52043594 -92238895 + AT_rich Low_complexity Low_complexity 1 24 0 736 171 0 0 chr12 52043607 52043718 -92238771 + AluJb SINE Alu 2 112 -200 2143 104 66 0 chr12 52043718 52044005 -92238484 - AluSx SINE Alu -6 306 1 392 130 14 0 chr12 52044027 52044096 -92238393 + GA-rich Low_complexity Low_complexity 3 72 0 1691 146 33 46 chr12 52044111 52044413 -92238076 - AluJo SINE Alu -13 299 2 1359 254 44 78 chr12 52044460 52045090 -92237399 - MLT1L LTR MaLR -2 613 5 703 167 50 0 chr12 52045281 52045401 -92237088 + FLAM_A SINE Alu 1 126 -7 249 33 0 0 chr12 52045426 52045456 -92237033 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2566 63 3 0 chr12 52045460 52045761 -92236728 + AluSp SINE Alu 1 302 -11 2437 92 0 0 chr12 52046278 52046582 -92235907 + AluSg SINE Alu 1 304 -6 299 280 0 43 chr12 52046790 52046883 -92235606 - L2 LINE L2 -218 3054 2966 1893 166 3 7 chr12 52047430 52047731 -92234758 - AluJb SINE Alu -12 300 1 2371 112 0 3 chr12 52048015 52048327 -92234162 + AluSq SINE Alu 1 311 -2 306 134 0 0 chr12 52048453 52048520 -92233969 + (GA)n Simple_repeat Simple_repeat 2 68 0 1842 179 3 10 chr12 52048842 52049155 -92233334 + AluJo SINE Alu 1 311 -1 619 309 85 38 chr12 52049281 52049679 -92232810 - MLT1K LTR MaLR -159 429 13 1318 185 0 0 chr12 52049775 52050002 -92232487 + AluJo SINE Alu 82 308 -4 503 317 27 33 chr12 52050051 52050234 -92232255 - L2 LINE L2 -81 3191 3010 1684 194 20 7 chr12 52050281 52050580 -92231909 - AluJb SINE Alu -9 303 1 874 147 0 22 chr12 52050587 52050785 -92231704 - FLAM_C SINE Alu 0 195 1 244 303 141 17 chr12 52050793 52051027 -92231462 + L2 LINE L2 2694 2956 -358 2214 86 28 17 chr12 52051081 52051372 -92231117 - AluSg SINE Alu -15 295 2 188 273 45 68 chr12 52051506 52051594 -92230895 + L2 LINE L2 3227 3312 -1 2346 100 3 0 chr12 52051885 52052186 -92230303 + AluSp SINE Alu 1 302 -11 1215 129 0 17 chr12 52052186 52052364 -92230125 + AluSg/x SINE Alu 132 306 -3 1298 236 65 53 chr12 52052368 52052801 -92229688 - MER21B LTR ERV1 -411 452 15 868 140 0 22 chr12 52052804 52052940 -92229549 - FLAM_C SINE Alu 0 133 1 198 0 0 0 chr12 52053265 52053287 -92229202 + (TA)n Simple_repeat Simple_repeat 2 23 0 632 213 9 0 chr12 52053297 52053405 -92229084 - FLAM_C SINE Alu -32 111 3 2239 101 0 23 chr12 52053415 52053721 -92228768 - AluSx SINE Alu -13 299 1 839 190 14 13 chr12 52053764 52053989 -92228500 + AluJb SINE Alu 5 312 0 1898 117 0 0 chr12 52054750 52054998 -92227491 + AluSq SINE Alu 1 248 -65 1622 84 0 5 chr12 52055169 52055372 -92227117 + AluSq SINE Alu 106 307 -6 25 51 0 0 chr12 52055547 52055586 -92226903 + AT_rich Low_complexity Low_complexity 1 39 0 2001 125 0 30 chr12 52055677 52056022 -92226467 + AluSx SINE Alu 1 336 0 333 312 174 35 chr12 52056032 52056343 -92226146 + L3 LINE CR1 1221 1574 -3 1823 167 14 3 chr12 52056814 52057107 -92225382 + AluJb SINE Alu 1 296 -16 397 40 162 0 chr12 52057107 52057181 -92225308 - Tigger3(Golem) DNA MER2_type -513 2516 2431 1801 170 10 3 chr12 52057183 52057471 -92225018 - AluJb SINE Alu -22 290 1 215 337 12 12 chr12 52057641 52057727 -92224762 + L2 LINE L2 1834 1919 -1395 364 263 64 51 chr12 52057727 52057883 -92224606 + MIR SINE MIR 26 183 -79 471 129 0 0 chr12 52058152 52058222 -92224267 + AluSp/q SINE Alu 230 299 -14 2033 159 0 0 chr12 52058611 52058919 -92223570 - AluSx SINE Alu -4 308 1 326 292 15 23 chr12 52058939 52059069 -92223420 + Charlie2 DNA MER1_type 73 201 -2581 617 167 0 0 chr12 52059085 52059187 -92223302 + AluJb SINE Alu 211 312 0 1170 153 37 0 chr12 52059330 52059520 -92222969 - AluSg/x SINE Alu -14 296 100 2137 88 7 14 chr12 52059660 52059998 -92222491 - AluSc SINE Alu 0 336 1 1750 173 7 10 chr12 52060000 52060300 -92222189 - AluJb SINE Alu -13 299 1 287 281 30 55 chr12 52060615 52060779 -92221710 + CT-rich Low_complexity Low_complexity 1 160 0 1156 190 5 15 chr12 52110802 52111007 -92171482 - AluJo SINE Alu -109 203 1 2223 256 116 25 chr12 52111334 52112144 -92170345 + L2 LINE L2 2269 3168 -145 939 203 42 5 chr12 52112204 52112396 -92170093 + MER58A DNA MER1_type 25 223 -1 202 195 0 24 chr12 52112399 52112440 -92170049 + L2 LINE L2 3215 3254 -18 2307 118 0 0 chr12 52112666 52112972 -92169517 - AluSq SINE Alu -7 306 1 2343 99 0 0 chr12 52112972 52113275 -92169214 - AluSx SINE Alu -9 303 1 2341 66 43 13 chr12 52113709 52114010 -92168479 - AluY SINE Alu 0 311 2 2065 136 0 3 chr12 52114012 52114322 -92168167 - AluSx SINE Alu -3 309 1 2335 101 0 0 chr12 52114489 52114795 -92167694 - AluSx SINE Alu -6 306 1 284 314 23 0 chr12 52114847 52114933 -92167556 - L2 LINE L2 -36 3277 3190 375 271 19 37 chr12 52114956 52115063 -92167426 - MIR SINE MIR -62 146 42 244 306 41 31 chr12 52115085 52115183 -92167306 - L2 LINE L2 0 3272 3174 654 209 8 0 chr12 52115643 52115772 -92166717 + MSTC LTR MaLR 219 348 -80 2159 108 0 23 chr12 52116613 52116919 -92165570 - AluSx SINE Alu -11 301 3 27 49 0 0 chr12 52116919 52116960 -92165529 + AT_rich Low_complexity Low_complexity 1 41 0 846 182 0 30 chr12 52117019 52117184 -92165305 + FRAM SINE Alu 1 160 -16 273 244 259 9 chr12 52117511 52117651 -92164838 - MLT1H LTR MaLR -24 525 373 821 175 0 0 chr12 52117809 52117935 -92164554 - AluJo SINE Alu -176 136 11 466 214 55 159 chr12 52117972 52118355 -92164134 - MLT1-int LTR MaLR 0 1371 1029 365 281 15 59 chr12 52118531 52118666 -92163823 - MLT1-int LTR MaLR -487 884 756 590 156 227 0 chr12 52118821 52118949 -92163540 + MER58C DNA MER1_type 59 215 0 1876 158 20 0 chr12 52119021 52119319 -92163170 - AluJo SINE Alu -8 304 1 2044 88 35 11 chr12 52119347 52119630 -92162859 - AluSg SINE Alu 0 310 21 1078 98 0 0 chr12 52119633 52119765 -92162724 - AluSq/x SINE Alu -180 132 1 328 335 23 17 chr12 52119886 52120062 -92162427 - MLT1-int LTR MaLR -831 540 364 1102 153 185 0 chr12 52120120 52120309 -92162180 - MER58A DNA MER1_type 0 224 1 443 274 91 6 chr12 52120496 52120671 -92161818 - MLT1F1 LTR MaLR 0 567 378 387 229 228 48 chr12 52120713 52120892 -92161597 - MLT1F1 LTR MaLR -195 395 249 2001 115 18 7 chr12 52120892 52121205 -92161284 - AluSx SINE Alu 0 316 1 387 229 228 48 chr12 52121205 52121342 -92161147 - MLT1F1 LTR MaLR -341 249 3 1079 173 5 5 chr12 52122315 52122506 -92159983 - AluY SINE Alu -26 285 95 1536 171 6 100 chr12 52122529 52122725 -92159764 - AluSp SINE Alu -6 307 155 2097 119 0 3 chr12 52122725 52123019 -92159470 - AluSq SINE Alu -18 295 3 1536 171 6 100 chr12 52123019 52123161 -92159328 - AluSp SINE Alu -158 155 1 617 139 78 42 chr12 52124675 52124731 -92157758 - LTR37A LTR ERV1 0 426 373 2007 120 40 3 chr12 52124731 52125032 -92157457 + AluSx SINE Alu 1 312 0 617 139 78 42 chr12 52125032 52125141 -92157348 - LTR37A LTR ERV1 -53 373 255 1263 200 63 39 chr12 52125156 52125441 -92157048 + AluJo SINE Alu 6 297 -15 810 169 52 104 chr12 52125444 52125557 -92156932 - LTR37A LTR ERV1 -173 253 136 2386 98 0 0 chr12 52125557 52125863 -92156626 + AluSg SINE Alu 1 306 -4 810 169 52 104 chr12 52125863 52125998 -92156491 - LTR37A LTR ERV1 -290 136 18 349 220 256 22 chr12 52126593 52126793 -92155696 + MIR SINE MIR 16 256 -6 315 227 31 52 chr12 52126943 52127040 -92155449 + MIR SINE MIR 160 254 -8 1865 128 0 38 chr12 52127044 52127333 -92155156 + AluSx SINE Alu 6 283 -29 779 144 0 18 chr12 52127436 52127547 -92154942 + AluJb SINE Alu 190 298 -14 1620 103 0 5 chr12 52127637 52127850 -92154639 - AluSx SINE Alu -99 213 2 3214 239 127 21 chr12 52127971 52128993 -92153496 + L2 LINE L2 8 1137 -2177 1052 149 0 28 chr12 52129055 52129203 -92153286 + AluJb SINE Alu 136 287 -25 231 36 0 0 chr12 52129203 52129231 -92153258 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 1052 149 0 28 chr12 52129231 52129243 -92153246 + AluJb SINE Alu 287 298 -14 1794 122 4 22 chr12 52129243 52129514 -92152975 + AluSx SINE Alu 44 309 -3 1052 149 0 28 chr12 52129514 52129533 -92152956 + AluJb SINE Alu 298 311 -1 839 226 121 4 chr12 52129536 52129801 -92152688 + L1MC5 LINE L1 7621 7916 -45 297 237 17 0 chr12 52129817 52129876 -92152613 + L2 LINE L2 1127 1186 -2128 942 141 0 0 chr12 52129886 52130021 -92152468 + AluJo SINE Alu 1 135 -177 1381 192 19 29 chr12 52130021 52130333 -92152156 + AluJo SINE Alu 1 309 -3 605 282 197 34 chr12 52130333 52130830 -92151659 + L2 LINE L2 1193 1770 -1544 202 143 0 54 chr12 52130986 52131042 -92151447 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 1412 145 170 0 chr12 52131225 52131466 -92151023 + AluJb SINE Alu 13 294 -18 487 293 36 6 chr12 52131471 52131638 -92150851 - L1MC/D LINE L1 -2182 5626 5455 2131 109 0 0 chr12 52131654 52131938 -92150551 + AluSg SINE Alu 1 284 -26 3585 144 56 37 chr12 52131946 52132620 -92149869 - L1MB2 LINE L1 -50 6121 5435 1273 145 10 0 chr12 52132620 52132848 -92149641 - AluSg/x SINE Alu 0 305 75 1640 70 0 9 chr12 52132848 52133061 -92149428 - AluY SINE Alu -100 211 1 753 274 81 66 chr12 52133179 52133361 -92149128 + L1M4 LINE L1 1277 1455 -5191 1398 193 69 14 chr12 52133361 52133651 -92148838 + AluJo SINE Alu 1 306 -6 753 274 81 66 chr12 52133651 52134038 -92148451 + L1M4 LINE L1 1455 1862 -4784 1042 152 52 24 chr12 52134789 52134999 -92147490 + L1MB4 LINE L1 5952 6167 -13 3070 191 73 7 chr12 52135006 52135621 -92146868 + L1M3 LINE L1 4661 5322 -858 201 39 0 0 chr12 52135621 52135647 -92146842 + (CAA)n Simple_repeat Simple_repeat 3 28 0 3070 191 73 7 chr12 52135647 52135775 -92146714 + L1M3 LINE L1 5322 5440 -740 1859 85 0 4 chr12 52135829 52136064 -92146425 + AluSq SINE Alu 13 246 -67 426 20 0 0 chr12 52136067 52136118 -92146371 + (CA)n Simple_repeat Simple_repeat 2 52 0 574 237 113 11 chr12 52136477 52136654 -92145835 - L2 LINE L2 0 3313 3119 1887 161 26 0 chr12 52136747 52137051 -92145438 - AluJo SINE Alu 0 312 1 1853 171 18 27 chr12 52137251 52137585 -92144904 + MER58B DNA MER1_type 1 331 -10 22 35 0 0 chr12 52137694 52137723 -92144766 + AT_rich Low_complexity Low_complexity 1 29 0 237 287 53 53 chr12 52137724 52137818 -92144671 - MIR SINE MIR -147 115 22 825 159 0 15 chr12 52137889 52138021 -92144468 + AluSq/x SINE Alu 2 131 -182 269 179 194 0 chr12 52138131 52138198 -92144291 + L1MB3 LINE L1 6090 6169 -14 2120 122 0 25 chr12 52138202 52138521 -92143968 - AluSx SINE Alu -1 311 1 2076 115 17 0 chr12 52139010 52139305 -92143184 + AluSx SINE Alu 1 300 -12 1819 149 0 36 chr12 52139517 52139818 -92142671 - AluJb SINE Alu -17 295 6 315 227 31 52 chr12 52139822 52139919 -92142570 - MIR SINE MIR -8 254 160 221 81 108 0 chr12 52140069 52140106 -92142383 - L2 LINE L2 -12 3260 3220 989 207 46 19 chr12 52140279 52140540 -92141949 + AluSq SINE Alu 22 289 -24 1818 132 89 4 chr12 52140563 52140843 -92141646 + AluJo SINE Alu 1 304 -8 2138 113 3 13 chr12 52141202 52141511 -92140978 + AluSq SINE Alu 1 306 -7 1216 96 0 0 chr12 52141867 52142024 -92140465 + AluSp/q SINE Alu 157 313 0 1686 143 0 21 chr12 52142293 52142572 -92139917 - AluSx SINE Alu -10 302 30 38 39 0 0 chr12 52142831 52142883 -92139606 + GC_rich Low_complexity Low_complexity 1 52 0 49 43 0 0 chr12 52142902 52142972 -92139517 + GC_rich Low_complexity Low_complexity 1 70 0 23 78 0 0 chr12 52143009 52143060 -92139429 + GC_rich Low_complexity Low_complexity 1 51 0 2175 105 7 3 chr12 52143430 52143726 -92138763 + AluSg SINE Alu 1 297 -13 1886 144 49 0 chr12 52143989 52144274 -92138215 + AluSx SINE Alu 1 299 -13 2149 114 10 13 chr12 52144575 52144883 -92137606 + AluSx SINE Alu 2 308 -4 2445 88 13 0 chr12 52144895 52145201 -92137288 + AluSx SINE Alu 1 310 -2 2065 105 0 35 chr12 52145220 52145506 -92136983 + AluSx SINE Alu 1 276 -36 24 0 0 0 chr12 52145696 52145720 -92136769 + AT_rich Low_complexity Low_complexity 1 24 0 1910 125 99 3 chr12 52146337 52146680 -92135809 + L1MB3 LINE L1 5794 6169 -14 2570 61 0 0 chr12 52146691 52147002 -92135487 - AluY SINE Alu 0 311 1 271 281 116 38 chr12 52147022 52147342 -92135147 + L1ME2 LINE L1 3173 3517 -2629 625 231 201 24 chr12 52147352 52147702 -92134787 + L1ME2 LINE L1 5526 5935 -227 379 93 37 0 chr12 52147768 52147822 -92134667 + AluJ/FLAM SINE Alu 36 91 -211 1923 222 86 32 chr12 52147854 52148133 -92134356 + L1ME3 LINE L1 5504 5766 -396 2478 45 7 0 chr12 52148133 52148423 -92134066 + AluY SINE Alu 1 292 -19 1923 222 86 32 chr12 52148423 52148768 -92133721 + L1ME3 LINE L1 5766 6162 0 207 100 0 0 chr12 52148930 52148960 -92133529 + (A)n Simple_repeat Simple_repeat 1 30 0 2156 128 0 10 chr12 52149229 52149534 -92132955 - AluSx SINE Alu -10 302 1 743 237 85 96 chr12 52149538 52149832 -92132657 - L1M4 LINE L1 -5072 1783 1487 2620 36 0 13 chr12 52149832 52150138 -92132351 + AluY SINE Alu 1 302 -9 743 237 85 96 chr12 52150138 52150446 -92132043 - L1M4 LINE L1 -5368 1487 1188 26 0 0 0 chr12 52150453 52150479 -92132010 + AT_rich Low_complexity Low_complexity 1 26 0 1637 190 28 3 chr12 52150486 52150775 -92131714 + AluJo SINE Alu 1 296 -16 2465 87 0 3 chr12 52150810 52151120 -92131369 - AluY SINE Alu -2 309 1 1862 155 10 7 chr12 52151561 52151858 -92130631 + AluJb SINE Alu 4 301 -11 26 0 0 0 chr12 52152055 52152081 -92130408 + AT_rich Low_complexity Low_complexity 1 26 0 324 268 53 91 chr12 52152081 52152324 -92130165 - L1M4 LINE L1 -5640 1215 982 995 219 0 25 chr12 52152380 52152581 -92129908 - AluJb SINE Alu -24 288 93 1853 168 0 0 chr12 52152589 52152880 -92129609 - AluJo SINE Alu -19 293 3 246 189 0 38 chr12 52153165 52153218 -92129271 - L1M4 LINE L1 -6656 203 153 1085 247 171 13 chr12 52153223 52153700 -92128789 - L2 LINE L2 -276 3037 2489 2319 99 3 0 chr12 52154399 52154693 -92127796 - AluSq SINE Alu -18 295 1 2018 113 11 0 chr12 52155147 52155430 -92127059 + AluSx SINE Alu 1 286 -26 3867 163 62 62 chr12 52155438 52156112 -92126377 - L1MB2 LINE L1 -50 6121 5449 2222 75 8 0 chr12 52156112 52156405 -92126084 - AluSx SINE Alu 0 307 13 3867 163 62 62 chr12 52156405 52156587 -92125902 - L1MB2 LINE L1 -722 5449 5269 201 39 0 0 chr12 52156587 52156613 -92125876 + (TTG)n Simple_repeat Simple_repeat 3 28 0 3867 163 62 62 chr12 52156613 52157228 -92125261 - L1MB2 LINE L1 -902 5269 4661 982 152 52 24 chr12 52157235 52157445 -92125044 - L1MB4 LINE L1 -13 6167 5952 21 36 0 0 chr12 52157819 52157847 -92124642 + AT_rich Low_complexity Low_complexity 1 28 0 204 146 21 42 chr12 52157891 52157939 -92124550 + (TATAA)n Simple_repeat Simple_repeat 3 49 0 2527 65 0 13 chr12 52157977 52158284 -92124205 - AluY SINE Alu -8 303 1 1825 159 7 10 chr12 52158284 52158580 -92123909 - AluJb SINE Alu -17 295 1 7342 16 2 383 chr12 52158600 52160836 -92121653 - SVA Other Other 0 1386 3 2632 189 97 31 chr12 52160933 52161646 -92120843 - L1ME3 LINE L1 -19 6143 5384 281 158 53 0 chr12 52161649 52161706 -92120783 - L1ME3A LINE L1 -14 6156 6097 219 36 0 0 chr12 52161748 52161776 -92120713 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1437 246 129 35 chr12 52161784 52162677 -92119812 - L2 LINE L2 -19 3294 2325 2791 195 42 42 chr12 52162949 52163430 -92119059 - L1MC4 LINE L1 0 8042 7559 2333 95 3 0 chr12 52163430 52163724 -92118765 - AluSc SINE Alu -14 295 1 2791 195 42 42 chr12 52163724 52163961 -92118528 - L1MC4 LINE L1 -482 7560 7324 226 250 18 0 chr12 52164019 52164075 -92118414 - MIR SINE MIR -22 240 184 944 102 0 22 chr12 52165637 52165774 -92116715 + FRAM SINE Alu 1 40 0 2405 146 36 7 chr12 52165787 52166206 -92116283 - L1MB3 LINE L1 -102 6081 5651 925 195 74 9 chr12 52166206 52166421 -92116068 - L1MB3 LINE L1 -1149 4997 4769 4779 202 53 61 chr12 52166427 52167162 -92115327 - L1ME3 LINE L1 -960 5186 4447 1789 144 16 38 chr12 52167162 52167475 -92115014 - AluJo SINE Alu -6 306 1 4779 202 53 61 chr12 52167475 52167564 -92114925 - L1ME3 LINE L1 -1699 4447 4359 2274 108 0 0 chr12 52167564 52167860 -92114629 - AluSq SINE Alu -17 296 1 4779 202 53 61 chr12 52167860 52168464 -92114025 - L1ME3 LINE L1 -1787 4359 3752 1985 142 3 25 chr12 52168464 52168781 -92113708 - AluJb SINE Alu -2 310 1 4779 202 53 61 chr12 52168781 52168847 -92113642 - L1ME3 LINE L1 -2394 3752 3700 2174 128 3 6 chr12 52168847 52169160 -92113329 - AluSx SINE Alu 0 312 1 4779 202 53 61 chr12 52169160 52169214 -92113275 - L1ME3 LINE L1 -2446 3700 3647 2396 175 96 89 chr12 52169222 52169838 -92112651 - MLT1E2 LTR MaLR -4 622 1 1948 233 113 37 chr12 52169840 52169874 -92112615 - L1ME3 LINE L1 -2501 3645 3615 2333 116 0 3 chr12 52169874 52170184 -92112305 - AluSx SINE Alu -1 311 3 2426 92 0 0 chr12 52170188 52170493 -92111996 - AluSc SINE Alu -4 305 1 1948 233 113 37 chr12 52170493 52171082 -92111407 - L1ME3 LINE L1 -2533 3613 2952 2512 73 0 6 chr12 52171082 52171395 -92111094 - AluY SINE Alu 0 311 1 1948 233 113 37 chr12 52171395 52171492 -92110997 - L1ME3 LINE L1 -3194 2952 2864 1195 141 141 0 chr12 52171492 52171691 -92110798 + AluJb SINE Alu 78 304 -8 373 269 35 0 chr12 52171694 52171835 -92110654 - L1ME3 LINE L1 -3274 2872 2727 1078 224 5 5 chr12 52171843 52172057 -92110432 - MER58A DNA MER1_type -10 214 1 257 192 39 51 chr12 52172057 52172135 -92110354 - L1M4c LINE L1 -3410 3547 3471 1261 215 123 111 chr12 52172141 52172160 -92110329 - L1M4c LINE L1 -3549 3408 3391 210 37 0 0 chr12 52172160 52172187 -92110302 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2319 85 0 0 chr12 52172189 52172470 -92110019 - AluSg SINE Alu -29 281 1 1261 215 123 111 chr12 52172470 52172490 -92109999 - L1M4c LINE L1 -3566 3391 3373 2397 100 46 6 chr12 52172490 52172840 -92109649 - THE1B LTR MaLR 0 364 1 1261 215 123 111 chr12 52172840 52173190 -92109299 - L1M4c LINE L1 -3584 3373 3029 2340 71 19 13 chr12 52173190 52173499 -92108990 - AluY SINE Alu 0 311 1 2284 105 0 0 chr12 52173509 52173794 -92108695 - AluSp SINE Alu -23 290 6 221 28 83 0 chr12 52173802 52173838 -92108651 + T-rich Low_complexity Low_complexity 2 40 0 2079 125 0 11 chr12 52173840 52174127 -92108362 - AluSx SINE Alu -28 284 1 1261 215 123 111 chr12 52174127 52174526 -92107963 - L1M4c LINE L1 -3942 3015 2622 317 185 0 0 chr12 52174526 52174580 -92107909 - FLAM SINE Alu -6 127 74 * 378 132 0 0 chr12 52174568 52174621 -92107868 - Alu SINE Alu -249 53 1 * 1261 215 123 111 chr12 52174621 52175243 -92107246 - L1M4c LINE L1 -4376 2581 1969 1414 193 69 14 chr12 52175243 52175533 -92106956 - AluJo SINE Alu -6 306 1 1261 215 123 111 chr12 52175533 52175831 -92106658 - L1M4c LINE L1 -4988 1969 1676 2585 36 0 16 chr12 52175831 52176138 -92106351 + AluY SINE Alu 1 302 -9 1261 215 123 111 chr12 52176138 52176444 -92106045 - L1M4c LINE L1 -5281 1676 1206 28 29 0 0 chr12 52176444 52176479 -92106010 + AT_rich Low_complexity Low_complexity 1 35 0 1637 190 28 3 chr12 52176486 52176775 -92105714 + AluJo SINE Alu 1 296 -16 2430 91 0 3 chr12 52176810 52177119 -92105370 - AluY SINE Alu -3 308 1 1918 159 10 0 chr12 52177560 52177855 -92104634 + AluJb SINE Alu 4 301 -11 26 0 0 0 chr12 52178051 52178077 -92104412 + AT_rich Low_complexity Low_complexity 1 26 0 292 272 53 91 chr12 52178077 52178320 -92104169 - L1M4c LINE L1 -5640 1215 982 995 219 0 25 chr12 52178376 52178577 -92103912 - AluJb SINE Alu -24 288 93 1847 168 0 0 chr12 52178585 52178876 -92103613 - AluJo SINE Alu -19 293 3 246 189 0 38 chr12 52179161 52179214 -92103275 - L1M4c LINE L1 -6656 203 153 1085 247 171 13 chr12 52179219 52179696 -92102793 - L2 LINE L2 -276 3037 2489 2319 99 3 0 chr12 52180395 52180689 -92101800 - AluSq SINE Alu -18 295 1 2093 143 3 0 chr12 52181143 52181450 -92101039 + AluSq SINE Alu 1 308 -5 1593 130 5 0 chr12 52181454 52181677 -92100812 + AluSx SINE Alu 1 224 -88 21 0 0 0 chr12 52181689 52181710 -92100779 + AT_rich Low_complexity Low_complexity 1 21 0 181 0 33 33 chr12 52182280 52182310 -92100179 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2107 98 7 14 chr12 52182464 52182791 -92099698 + AluSp SINE Alu 1 325 0 21 0 0 0 chr12 52183361 52183382 -92099107 + AT_rich Low_complexity Low_complexity 1 21 0 1550 131 9 0 chr12 52183394 52183616 -92098873 - AluSx SINE Alu -88 224 1 2099 136 0 7 chr12 52183620 52183929 -92098560 - AluSq SINE Alu -5 308 2 396 226 0 0 chr12 52183943 52184036 -92098453 + MER5A DNA MER1_type 3 95 -94 1511 177 59 36 chr12 52184636 52184795 -92097694 - AluJo SINE Alu 0 312 158 2306 94 27 0 chr12 52184795 52185093 -92097396 - AluSx SINE Alu -6 306 1 1511 177 59 36 chr12 52185093 52185238 -92097251 - AluJo SINE Alu -154 158 1 944 178 19 24 chr12 52185432 52185640 -92096849 + AluJb SINE Alu 1 207 -105 1883 71 7 92 chr12 52186028 52186354 -92096135 + AluSq SINE Alu 14 314 0 2281 85 0 11 chr12 52186400 52186683 -92095806 + AluSc SINE Alu 13 292 -17 1641 191 108 134 chr12 52188414 52189262 -92093227 - LTR1B LTR ERV1 0 826 1 24 67 0 0 chr12 52189281 52189326 -92093163 + AT_rich Low_complexity Low_complexity 1 45 0 2456 68 0 26 chr12 52189338 52189647 -92092842 + AluY SINE Alu 1 301 -10 207 208 208 19 chr12 52190185 52190291 -92092198 + MER5C DNA MER1_type 3 128 -196 244 218 73 36 chr12 52190307 52190319 -92092170 - L1MA10 LINE L1 -3 6331 6320 3709 193 67 36 chr12 52190319 52190436 -92092053 - L1ME1 LINE L1 -4 6162 6050 1630 169 16 58 chr12 52190436 52190552 -92091937 + AluJo SINE Alu 1 120 -192 2406 87 0 23 chr12 52190552 52190862 -92091627 + AluSp SINE Alu 1 303 -10 1630 169 16 58 chr12 52190862 52190905 -92091584 + AluJo SINE Alu 120 300 -12 925 137 33 33 chr12 52190905 52191058 -92091431 + FRAM SINE Alu 12 164 -12 3709 193 67 36 chr12 52191058 52191876 -92090613 - L1ME1 LINE L1 -116 6050 5259 2365 86 0 0 chr12 52191876 52192167 -92090322 + AluSx SINE Alu 1 291 -21 3709 193 67 36 chr12 52192167 52192370 -92090119 - L1ME1 LINE L1 -907 5259 5064 2259 84 0 42 chr12 52192370 52192681 -92089808 - AluSg1 SINE Alu -11 298 1 3709 193 67 36 chr12 52192681 52193253 -92089236 - L1ME1 LINE L1 -1102 5064 4404 1930 115 16 47 chr12 52193254 52193575 -92088914 - AluY SINE Alu 0 311 1 2133 87 6 90 chr12 52193913 52194246 -92088243 - AluYb8 SINE Alu -13 305 1 414 121 52 35 chr12 52194246 52194362 -92088127 + T-rich Low_complexity Low_complexity 1 118 0 2330 105 3 6 chr12 52194362 52194675 -92087814 - AluSx SINE Alu 0 312 1 1847 179 0 0 chr12 52195832 52196144 -92086345 + AluJb SINE Alu 1 312 0 2339 101 3 3 chr12 52196149 52196455 -92086034 + AluSx SINE Alu 1 306 -6 725 221 91 0 chr12 52196455 52196609 -92085880 + AluJo/FRAM SINE Alu 137 304 -8 2172 133 10 0 chr12 52196650 52196950 -92085539 + AluSx SINE Alu 1 303 -9 2258 112 0 10 chr12 52197070 52197373 -92085116 - AluSq SINE Alu -13 300 1 394 307 25 57 chr12 52198024 52198268 -92084221 + MIR SINE MIR 12 247 -15 1446 220 33 10 chr12 52198369 52198673 -92083816 - AluJo SINE Alu -1 311 1 1302 153 34 13 chr12 52198673 52198908 -92083581 - L1MB3 LINE L1 -32 6151 5912 1474 163 54 22 chr12 52198908 52199185 -92083304 + AluJb SINE Alu 1 286 -26 453 216 95 20 chr12 52199204 52199352 -92083137 - L1MC5 LINE L1 -38 7923 7765 400 262 129 37 chr12 52199367 52199638 -92082851 + L1ME3 LINE L1 5077 5372 -774 34 0 0 0 chr12 52199638 52199672 -92082817 + AT_rich Low_complexity Low_complexity 1 34 0 2017 117 7 36 chr12 52199800 52200107 -92082382 + AluJb SINE Alu 1 298 -14 1915 148 7 7 chr12 52200175 52200458 -92082031 + AluSx SINE Alu 1 283 -29 1230 270 56 21 chr12 52200478 52200904 -92081585 + L1ME3 LINE L1 5522 5962 -208 264 61 0 0 chr12 52200940 52200973 -92081516 - THE1A LTR MaLR 0 355 323 270 288 58 43 chr12 52200980 52201119 -92081370 + L1ME3 LINE L1 5962 6102 -60 491 250 59 64 chr12 52201732 52201822 -92080667 + L1ME3A LINE L1 5728 5817 -353 2108 141 39 20 chr12 52201822 52202177 -92080312 - THE1B LTR MaLR 0 364 3 491 250 59 64 chr12 52202177 52202322 -92080167 + L1ME3A LINE L1 5817 5962 -208 2115 105 7 11 chr12 52202470 52202784 -92079705 - AluSx SINE Alu 0 313 1 3882 115 100 60 chr12 52203034 52203764 -92078725 + LTR1 LTR ERV1 27 785 0 2290 88 17 0 chr12 52203866 52204161 -92078328 + AluSp SINE Alu 1 300 -13 2013 142 0 19 chr12 52205004 52205320 -92077169 - AluJo SINE Alu -2 310 1 3461 173 192 27 chr12 52205804 52206768 -92075721 - MER52C LTR ERV1 0 1278 37 246 267 81 12 chr12 52207528 52207614 -92074875 + L2 LINE L2 3137 3228 -44 1089 198 9 5 chr12 52207622 52207844 -92074645 - L1M3 LINE L1 -485 5698 5476 1910 277 116 26 chr12 52208354 52208404 -92074085 - L1M3 LINE L1 -2455 3691 3647 2282 113 0 7 chr12 52208404 52208713 -92073776 + AluSx SINE Alu 1 307 -5 1910 277 116 26 chr12 52208713 52209756 -92072733 - L1M3 LINE L1 -2499 3647 2500 339 354 0 0 chr12 52209863 52209993 -92072496 + C-rich Low_complexity Low_complexity 1 130 0 23 0 0 0 chr12 52210264 52210287 -92072202 + AT_rich Low_complexity Low_complexity 1 23 0 1576 72 0 76 chr12 52210287 52210413 -92072076 - L1PB1 LINE L1 -7 6144 6043 2278 86 7 3 chr12 52210413 52210704 -92071785 - AluY SINE Alu -19 292 1 1576 72 0 76 chr12 52210704 52210813 -92071676 - L1PB1 LINE L1 -108 6043 5927 2762 160 18 40 chr12 52210813 52211361 -92071128 - L1PA16 LINE L1 -12 6154 5618 2242 66 45 3 chr12 52213597 52213883 -92068606 - AluY SINE Alu -13 298 1 1868 146 36 4 chr12 52213902 52214182 -92068307 - AluSx SINE Alu -23 289 1 2184 130 3 0 chr12 52214288 52214589 -92067900 - AluSx SINE Alu -10 302 1 2011 94 22 11 chr12 52214716 52215028 -92067461 - AluSc SINE Alu 0 316 2 293 193 17 6 chr12 52215127 52215205 -92067284 - Alu SINE Alu -6 294 251 921 80 0 0 chr12 52215205 52215318 -92067171 + AluY SINE Alu 176 288 -23 405 104 0 15 chr12 52215605 52215672 -92066817 + FLAM_C SINE Alu 72 137 -6 257 122 0 0 chr12 52215676 52215717 -92066772 + L1M2 LINE L1 5324 5364 -970 332 196 76 33 chr12 52215719 52215811 -92066678 + MER66B LTR ERV1 297 392 -94 2535 145 23 5 chr12 52215817 52216245 -92066244 + L1M2 LINE L1 5352 5787 -525 751 145 84 0 chr12 52216245 52216376 -92066113 + MER7A DNA MER2_type 1 140 -206 29 94 0 0 chr12 52217721 52217806 -92064683 + GC_rich Low_complexity Low_complexity 1 85 0 22 0 0 0 chr12 52218402 52218424 -92064065 + AT_rich Low_complexity Low_complexity 1 22 0 2237 114 0 0 chr12 52218436 52218742 -92063747 - AluSx SINE Alu -6 306 1 586 211 64 23 chr12 52218745 52218916 -92063573 + MIR SINE MIR 81 258 -4 471 153 7 44 chr12 52219015 52219152 -92063337 + GA-rich Low_complexity Low_complexity 3 134 0 231 287 31 62 chr12 52219169 52219298 -92063191 - MIR SINE MIR -73 135 11 504 257 20 7 chr12 52219516 52219664 -92062825 - MIR SINE MIR -11 251 102 2236 103 20 0 chr12 52220091 52220391 -92062098 - AluSx SINE Alu -6 306 1 858 272 51 77 chr12 52220839 52221309 -92061180 + LTR33 LTR ERVL 60 517 -4 1674 188 3 0 chr12 52221415 52221713 -92060776 - AluJb SINE Alu -9 303 5 2242 66 45 3 chr12 52223693 52223979 -92058510 - AluY SINE Alu -13 298 1 1950 136 36 0 chr12 52223998 52224277 -92058212 - AluSx SINE Alu -23 289 1 2184 130 3 0 chr12 52224383 52224684 -92057805 - AluSx SINE Alu -10 302 1 2011 94 22 11 chr12 52224811 52225123 -92057366 - AluSc SINE Alu 0 316 2 293 193 17 6 chr12 52225222 52225300 -92057189 - Alu SINE Alu -6 294 251 1006 63 16 0 chr12 52225300 52225427 -92057062 + AluY SINE Alu 176 304 -7 481 292 121 23 chr12 52225432 52225689 -92056800 - L1MC4a LINE L1 -1105 6703 6422 2022 125 20 14 chr12 52225830 52226125 -92056364 + AluSx SINE Alu 1 297 -15 482 232 262 27 chr12 52226127 52226217 -92056272 - L1MEd LINE L1 -5719 400 332 1722 141 25 14 chr12 52226217 52226500 -92055989 - AluJb SINE Alu -5 307 22 482 232 262 27 chr12 52226500 52226672 -92055817 - L1MEd LINE L1 -5787 332 76 2125 104 0 7 chr12 52226676 52226956 -92055533 - AluSc SINE Alu -19 290 13 2012 69 7 79 chr12 52227002 52227324 -92055165 - AluSq SINE Alu 0 314 14 2009 118 11 7 chr12 52227631 52227918 -92054571 + AluSx SINE Alu 7 294 -18 26 0 0 0 chr12 52228835 52228861 -92053628 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 52230017 52230038 -92052451 + AT_rich Low_complexity Low_complexity 1 21 0 2175 120 0 7 chr12 52230110 52230410 -92052079 + AluSx SINE Alu 1 298 -14 822 126 42 0 chr12 52230683 52230802 -92051687 + AluJb SINE Alu 1 124 -188 293 289 67 22 chr12 52230844 52230979 -92051510 + MIR SINE MIR 13 153 -109 2160 127 0 6 chr12 52231458 52231772 -92050717 - AluSx SINE Alu 0 312 1 585 154 0 0 chr12 52232065 52232156 -92050333 + AluS SINE Alu 2 92 -221 1693 196 65 52 chr12 52232279 52232433 -92050056 - L1M4 LINE L1 -1003 5143 4993 2259 84 0 42 chr12 52232433 52232744 -92049745 - AluSg1 SINE Alu -11 298 1 1693 196 65 52 chr12 52232744 52233109 -92049380 - L1M4 LINE L1 -1153 4993 4617 661 221 20 63 chr12 52233532 52233765 -92048724 + L1PA16 LINE L1 5925 6148 -18 1540 76 0 76 chr12 52233765 52233874 -92048615 + L1PB1 LINE L1 5927 6010 -141 2293 82 7 3 chr12 52233874 52234165 -92048324 + AluY SINE Alu 1 292 -19 1540 76 0 76 chr12 52234165 52234291 -92048198 + L1PB1 LINE L1 6010 6144 -7 661 221 20 63 chr12 52234291 52234310 -92048179 + L1PA16 LINE L1 6148 6166 0 3178 175 106 54 chr12 52234334 52234536 -92047953 + L1ME1 LINE L1 5152 5342 -992 1729 185 3 7 chr12 52234536 52234839 -92047650 + AluSg SINE Alu 1 302 -8 3178 175 106 54 chr12 52234839 52235061 -92047428 + L1ME1 LINE L1 5342 5551 -783 2474 74 0 0 chr12 52235061 52235357 -92047132 - AluSx SINE Alu -16 296 1 3178 175 106 54 chr12 52235357 52235907 -92046582 + L1ME1 LINE L1 5551 6331 -3 1890 159 3 0 chr12 52236290 52236579 -92045910 + AluJb SINE Alu 1 290 -22 595 248 106 0 chr12 52236752 52236950 -92045539 + HAL1 LINE L1 8 226 -2281 2750 212 144 44 chr12 52236981 52237092 -92045397 + HAL1 LINE L1 636 735 -1772 2330 98 0 0 chr12 52237092 52237387 -92045102 + AluSc SINE Alu 1 295 -14 2750 212 144 44 chr12 52237387 52238292 -92044197 + HAL1 LINE L1 735 1753 -754 2321 101 3 16 chr12 52238695 52239003 -92043486 - AluSx SINE Alu -4 308 5 1114 83 0 0 chr12 52239414 52239546 -92042943 + AluY SINE Alu 1 132 -179 814 278 36 36 chr12 52240059 52240127 -92042362 + HAL1 LINE L1 1720 1787 -720 1915 131 40 0 chr12 52240127 52240424 -92042065 + AluSq SINE Alu 1 309 -4 814 278 36 36 chr12 52240424 52240718 -92041771 + HAL1 LINE L1 1786 2082 -425 474 195 281 18 chr12 52240723 52240887 -92041602 - MER115 DNA AcHobo -420 273 67 508 255 57 0 chr12 52240887 52241028 -92041461 + HAL1 LINE L1 2338 2486 -21 22 35 0 0 chr12 52241264 52241293 -92041196 + GC_rich Low_complexity Low_complexity 1 29 0 1158 156 19 5 chr12 52241338 52241549 -92040940 + AluJo SINE Alu 85 298 -14 265 246 0 134 chr12 52242043 52242177 -92040312 + L2 LINE L2 3197 3312 -1 1248 135 10 83 chr12 52243146 52243458 -92039031 - AluSg SINE Alu -21 289 1 22 35 0 0 chr12 52243556 52243585 -92038904 + AT_rich Low_complexity Low_complexity 1 29 0 1829 153 0 4 chr12 52243608 52243876 -92038613 + AluJb SINE Alu 1 267 -45 387 41 0 0 chr12 52243883 52243932 -92038557 + (CA)n Simple_repeat Simple_repeat 2 50 0 1004 241 48 15 chr12 52243936 52245084 -92037405 + L1M4 LINE L1 2389 3647 -2499 23 0 0 0 chr12 52245091 52245114 -92037375 + AT_rich Low_complexity Low_complexity 1 23 0 2545 74 0 0 chr12 52249443 52249740 -92032749 + AluY SINE Alu 1 297 -14 2151 127 13 3 chr12 52249755 52250062 -92032427 + AluJb SINE Alu 1 310 -2 2413 95 0 3 chr12 52250064 52250369 -92032120 + AluSq SINE Alu 1 304 -9 2135 131 6 6 chr12 52250379 52250691 -92031798 + AluSx SINE Alu 1 312 0 830 243 15 11 chr12 52250709 52250981 -92031508 + L1MEc LINE L1 2099 2371 -4025 703 107 0 29 chr12 52250981 52251084 -92031405 + U6 snRNA snRNA 1 100 -7 525 170 48 48 chr12 52251090 52251229 -92031260 + L1MEc LINE L1 2318 2459 -3756 2085 115 20 16 chr12 52251229 52251533 -92030956 + AluSx SINE Alu 1 305 -7 525 170 48 48 chr12 52251533 52251558 -92030931 + L1MEc LINE L1 2458 2482 -3733 647 213 8 0 chr12 52251570 52251692 -92030797 + FLAM_C SINE Alu 2 124 -19 306 244 43 9 chr12 52251694 52251809 -92030680 + L1MEc LINE L1 2472 2590 -3625 281 174 163 0 chr12 52251781 52251873 -92030616 + L1M4 LINE L1 4526 4632 -1583 * 1360 96 59 21 chr12 52252228 52252467 -92030022 - Tigger7 DNA MER2_type -1 2490 2243 2244 98 7 0 chr12 52252471 52252758 -92029731 + AluSx SINE Alu 1 289 -23 1240 189 62 51 chr12 52254476 52254652 -92027837 - AluJb SINE Alu 0 312 130 1897 137 62 0 chr12 52254652 52254944 -92027545 - AluSx SINE Alu -2 310 1 1240 189 62 51 chr12 52254944 52255042 -92027447 - AluJb SINE Alu -182 130 35 400 281 193 16 chr12 52257497 52257689 -92024800 + MIR SINE MIR 7 232 -30 234 215 152 25 chr12 52257839 52257918 -92024571 - MER81 DNA DNA 0 114 26 315 289 13 0 chr12 52257932 52258008 -92024481 - AluY SINE Alu -13 288 212 255 239 0 0 chr12 52258042 52258130 -92024359 + C-rich Low_complexity Low_complexity 1 88 0 1237 151 0 76 chr12 52259086 52259324 -92023165 - AluJb SINE Alu -92 220 1 1928 140 7 26 chr12 52260286 52260594 -92021895 + AluJo SINE Alu 2 303 -9 324 290 54 11 chr12 52262053 52262146 -92020343 + L3b LINE CR1 1472 1568 -15 259 272 169 29 chr12 52263841 52263977 -92018512 - MER5A DNA MER1_type 0 189 35 212 86 29 0 chr12 52264366 52264401 -92018088 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 2306 110 3 0 chr12 52264546 52264847 -92017642 - AluSx SINE Alu -10 302 1 453 293 63 5 chr12 52266363 52266554 -92015935 + L2 LINE L2 2776 2977 -337 181 320 58 48 chr12 52266600 52266703 -92015786 - L2 LINE L2 -658 2656 2553 206 167 0 0 chr12 52266848 52266884 -92015605 - L2 LINE L2 -17 3296 3261 981 209 0 0 chr12 52266926 52267098 -92015391 + AluJo SINE Alu 120 291 -21 1381 195 79 11 chr12 52267423 52267700 -92014789 + AluJo SINE Alu 1 296 -16 24 32 0 0 chr12 52268402 52268433 -92014056 + AT_rich Low_complexity Low_complexity 1 31 0 1613 128 92 0 chr12 52268784 52269033 -92013456 + AluJb SINE Alu 31 302 -10 1000 239 50 0 chr12 52269035 52269257 -92013232 + MIR SINE MIR 28 260 -2 2411 107 0 3 chr12 52269721 52270031 -92012458 + AluSx SINE Alu 1 309 -3 1531 169 105 4 chr12 52270040 52270307 -92012182 + AluJo SINE Alu 1 294 -18 247 221 162 7 chr12 52270461 52270597 -92011892 - L1ME4a LINE L1 -101 6020 5864 741 308 127 40 chr12 52270635 52271281 -92011208 - L2 LINE L2 -13 3259 2564 1558 146 48 15 chr12 52271335 52271603 -92010886 - AluJb SINE Alu -1 311 35 226 377 8 0 chr12 52271710 52271832 -92010657 + G-rich Low_complexity Low_complexity 6 128 0 448 326 8 0 chr12 52272272 52272404 -92010085 + L2 LINE L2 2938 3070 -243 566 224 8 0 chr12 52272910 52273035 -92009454 - FRAM SINE Alu -16 160 35 408 296 83 48 chr12 52273039 52273269 -92009220 + L2 LINE L2 3057 3294 -19 1314 307 63 23 chr12 52273269 52273744 -92008745 - MLT1K LTR MaLR -71 517 24 21 82 0 0 chr12 52274402 52274451 -92008038 + GC_rich Low_complexity Low_complexity 1 49 0 321 227 0 0 chr12 52275762 52275872 -92006617 + C-rich Low_complexity Low_complexity 1 110 0 227 246 25 51 chr12 52275904 52276022 -92006467 + C-rich Low_complexity Low_complexity 6 120 0 1813 170 7 7 chr12 52276345 52276651 -92005838 - AluJo SINE Alu -6 306 1 428 320 42 14 chr12 52276666 52276737 -92005752 - L1ME4a LINE L1 -217 5904 5836 2227 98 10 7 chr12 52276737 52277033 -92005456 - AluSx SINE Alu -15 297 1 428 320 42 14 chr12 52277033 52277245 -92005244 - L1ME4a LINE L1 -285 5836 5613 1008 257 94 31 chr12 52277336 52277568 -92004921 - L1ME4a LINE L1 -1 6120 5904 2429 85 10 7 chr12 52277568 52277873 -92004616 - AluSx SINE Alu -6 306 1 1008 257 94 31 chr12 52277873 52277935 -92004554 - L1ME4a LINE L1 -217 5904 5847 2174 142 0 0 chr12 52277935 52278237 -92004252 - AluSx SINE Alu -9 303 2 1008 257 94 31 chr12 52278237 52278260 -92004229 - L1ME4a LINE L1 -274 5847 5827 2570 60 3 0 chr12 52278260 52278559 -92003930 - AluY SINE Alu -11 300 1 1008 257 94 31 chr12 52278559 52278927 -92003562 - L1ME4a LINE L1 -294 5827 5361 804 219 16 33 chr12 52280200 52280383 -92002106 + AluJo SINE Alu 72 251 -61 2524 74 0 0 chr12 52280406 52280703 -92001786 + AluY SINE Alu 1 297 -14 322 322 166 20 chr12 52280789 52280918 -92001571 - MIR SINE MIR -12 250 141 1852 150 4 4 chr12 52280918 52281191 -92001298 + AluJo SINE Alu 1 273 -39 322 322 166 20 chr12 52281191 52281260 -92001229 - MIR SINE MIR -121 141 23 2214 80 42 3 chr12 52281287 52281573 -92000916 + AluY SINE Alu 1 297 -14 271 311 106 8 chr12 52281843 52281975 -92000514 + MIR SINE MIR 8 152 -110 280 257 186 0 chr12 52282651 52282791 -91999698 - L2 LINE L2 -18 3295 3130 1753 194 20 0 chr12 52282957 52283261 -91999228 + AluJb SINE Alu 3 312 0 2156 90 7 17 chr12 52283845 52284135 -91998354 + AluSg SINE Alu 18 304 -6 796 209 43 5 chr12 52285112 52285299 -91997190 - MIR SINE MIR 0 262 69 491 272 183 0 chr12 52286251 52286420 -91996069 - MIR SINE MIR 0 262 63 216 258 48 0 chr12 52287170 52287232 -91995257 - MIR3 SINE MIR -54 154 90 539 301 66 5 chr12 52287282 52287478 -91995011 + MIR SINE MIR 50 257 -5 674 267 129 0 chr12 52287700 52287917 -91994572 - MIR SINE MIR -13 249 5 1063 259 51 18 chr12 52291473 52291809 -91990680 - HAL1 LINE L1 -605 1902 1556 2277 107 3 0 chr12 52291822 52292112 -91990377 - AluSq SINE Alu -22 291 1 30 0 0 0 chr12 52292114 52292144 -91990345 + AT_rich Low_complexity Low_complexity 1 30 0 4218 178 30 22 chr12 52292149 52292636 -91989853 - L1MA9 LINE L1 -38 6274 5775 2068 167 36 0 chr12 52292636 52292972 -91989517 - MER7A DNA MER2_type 0 346 1 4218 178 30 22 chr12 52292972 52293400 -91989089 - L1MA9 LINE L1 -537 5775 5352 330 196 76 33 chr12 52293406 52293498 -91988991 - MER66B LTR ERV1 -94 392 297 243 120 0 40 chr12 52293500 52293550 -91988939 - L1MA9 LINE L1 -970 5364 5317 * 416 90 0 15 chr12 52293545 52293612 -91988877 - FLAM_A SINE Alu -6 136 71 2237 72 7 7 chr12 52293880 52294187 -91988302 - AluY SINE Alu -4 307 1 344 182 60 35 chr12 52294789 52294902 -91987587 - L1MC/D LINE L1 -746 5489 5412 403 264 0 0 chr12 52294904 52294995 -91987494 - L1MC/D LINE L1 -850 5365 5275 2268 97 0 0 chr12 52294996 52295296 -91987193 - AluSx SINE Alu -12 300 1 1331 105 59 17 chr12 52295300 52295538 -91986951 + Tigger7 DNA MER2_type 2243 2490 -1 277 209 151 6 chr12 52295893 52296072 -91986417 - L1MC/D LINE L1 -1583 4632 2472 691 213 8 0 chr12 52296074 52296196 -91986293 - FLAM_C SINE Alu -19 124 2 505 184 49 37 chr12 52296208 52296231 -91986258 - L1MC/D LINE L1 -3733 2482 2461 1954 118 20 16 chr12 52296231 52296537 -91985952 - AluSx SINE Alu -5 307 1 505 184 49 37 chr12 52296537 52296676 -91985813 - L1MC/D LINE L1 -3754 2461 2318 700 107 0 29 chr12 52296682 52296785 -91985704 - U6 snRNA snRNA -7 100 1 2483 216 97 17 chr12 52296785 52297075 -91985414 - L1MC/D LINE L1 -4025 2371 2106 2030 125 6 6 chr12 52297075 52297387 -91985102 - AluSx SINE Alu 0 312 1 2168 115 0 0 chr12 52297389 52297693 -91984796 - AluSg SINE Alu -2 308 5 2483 216 97 17 chr12 52297693 52297857 -91984632 - L1MC/D LINE L1 -4290 2106 1957 2096 160 24 3 chr12 52297857 52298194 -91984295 - MER2 DNA MER2_type 0 344 1 2483 216 97 17 chr12 52298194 52298486 -91984003 - L1MC/D LINE L1 -4439 1957 1561 1092 273 134 14 chr12 52298483 52298922 -91983567 - L1MC/D LINE L1 -5849 547 56 * 2311 90 7 0 chr12 52299888 52300189 -91982300 - AluSc SINE Alu -6 303 1 2185 75 7 0 chr12 52304572 52304877 -91977612 + AluY SINE Alu 1 307 0 593 227 11 0 chr12 52307020 52307196 -91975293 + (TATG)n Simple_repeat Simple_repeat 1 178 0 951 241 92 58 chr12 52307669 52307817 -91974672 + L1MCa LINE L1 918 1059 -5367 2313 107 0 0 chr12 52307817 52308125 -91974364 + AluSc SINE Alu 2 309 0 951 241 92 58 chr12 52308125 52308583 -91973906 + L1MCa LINE L1 1059 1545 -4881 195 100 0 0 chr12 52309585 52309615 -91972874 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 875 274 118 41 chr12 52309615 52309707 -91972782 - L2 LINE L2 -13 3300 3216 2271 85 3 0 chr12 52309707 52310012 -91972477 + AluY SINE Alu 1 306 -5 875 274 118 41 chr12 52310012 52310564 -91971925 - L2 LINE L2 -97 3216 2614 2010 113 24 3 chr12 52310595 52310888 -91971601 + AluSq SINE Alu 1 299 -14 347 264 0 11 chr12 52311470 52311557 -91970932 - L2 LINE L2 0 3313 3228 219 293 61 0 chr12 52311722 52311804 -91970685 - L2 LINE L2 -248 3065 2979 489 323 169 30 chr12 52312459 52313164 -91969325 + L2 LINE L2 2000 2802 -512 395 254 12 73 chr12 52313189 52313310 -91969179 - L1MC/D LINE L1 -2000 5808 5698 1635 131 54 34 chr12 52313310 52313607 -91968882 - AluJo SINE Alu -9 303 1 395 254 12 73 chr12 52313607 52313650 -91968839 - L1MC/D LINE L1 -2110 5698 5654 458 253 178 8 chr12 52313697 52313950 -91968539 - L1MC/D LINE L1 -2259 5549 5254 507 331 105 62 chr12 52314031 52314138 -91968351 - L1MC/D LINE L1 -1005 5141 5040 2117 124 0 13 chr12 52314138 52314453 -91968036 - AluSx SINE Alu -1 311 1 507 331 105 62 chr12 52314453 52314663 -91967826 - L1MC/D LINE L1 -1106 5040 4840 2100 119 0 7 chr12 52314663 52314965 -91967524 - AluSx SINE Alu -12 300 1 507 331 105 62 chr12 52314965 52315146 -91967343 - L1MC/D LINE L1 -1306 4840 4607 326 292 93 12 chr12 52315174 52315335 -91967154 - L1MC/D LINE L1 -1486 4660 4487 2110 140 33 11 chr12 52315359 52315723 -91966766 + THE1C LTR MaLR 1 372 -3 443 324 160 14 chr12 52315839 52316114 -91966375 - L1MC/D LINE L1 -1841 4305 3991 243 0 0 0 chr12 52316237 52316264 -91966225 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 760 228 119 9 chr12 52316567 52316786 -91965703 - MIR SINE MIR 0 262 20 1829 145 3 3 chr12 52316835 52317145 -91965344 - AluJb SINE Alu 0 310 1 2267 90 45 30 chr12 52317300 52317632 -91964857 + MER1B DNA MER1_type 1 337 0 816 291 95 9 chr12 52317681 52318028 -91964461 + L2 LINE L2 2038 2414 -900 686 274 181 32 chr12 52318039 52318542 -91963947 - L2 LINE L2 -4 3309 2526 1622 309 27 11 chr12 52318554 52319198 -91963291 + L2 LINE L2 2422 3072 -241 1981 130 7 0 chr12 52319509 52319808 -91962681 + AluSx SINE Alu 7 307 -5 399 212 152 82 chr12 52319823 52319846 -91962643 - L1ME4a LINE L1 0 6121 6101 2141 108 3 10 chr12 52319846 52320153 -91962336 + AluSx SINE Alu 1 305 -7 399 212 152 82 chr12 52320153 52320353 -91962136 - L1ME4a LINE L1 -20 6101 5873 2015 99 0 40 chr12 52320353 52320657 -91961832 + AluSg SINE Alu 1 292 -18 399 212 152 82 chr12 52320657 52320701 -91961788 - L1ME4a LINE L1 -248 5873 5834 326 357 132 34 chr12 52320884 52321301 -91961188 - L3 LINE CR1 -161 1416 959 228 111 0 0 chr12 52324863 52324899 -91957590 + (CTGGGG)n Simple_repeat Simple_repeat 4 39 0 265 231 19 93 chr12 52325715 52325823 -91956666 + MIR3 SINE MIR 85 184 -24 2052 96 38 0 chr12 52327969 52328260 -91954229 + AluSg SINE Alu 2 303 -7 541 238 25 0 chr12 52328683 52328805 -91953684 - FLAM_A SINE Alu -8 125 1 368 307 133 0 chr12 52328832 52328982 -91953507 + MER112 DNA MER1_type 90 259 -1 319 265 167 23 chr12 52329096 52329228 -91953261 + MIR SINE MIR 13 163 -99 34 0 0 0 chr12 52331587 52331621 -91950868 + AT_rich Low_complexity Low_complexity 1 34 0 254 224 184 10 chr12 52333115 52333213 -91949276 - MIR SINE MIR -56 152 38 2242 56 16 39 chr12 52334419 52334725 -91947764 - AluY SINE Alu -12 299 1 297 283 106 38 chr12 52335855 52336021 -91946468 + MER5A DNA MER1_type 2 189 0 248 81 27 0 chr12 52336147 52336184 -91946305 - HsTC2 DNA Tc2 -623 1275 1238 415 254 0 63 chr12 52336194 52336320 -91946169 - HsTC2 DNA Tc2 -1780 118 1 1555 142 7 40 chr12 52336465 52336739 -91945750 + AluJb SINE Alu 29 293 -19 262 271 29 0 chr12 52336777 52336847 -91945642 - L3 LINE CR1 -133 1444 1373 510 307 60 18 chr12 52336975 52337193 -91945296 - L3 LINE CR1 -769 808 582 2192 119 3 0 chr12 52338279 52338589 -91943900 - AluSx SINE Alu -1 311 1 312 272 222 6 chr12 52338745 52338925 -91943564 + MIR SINE MIR 20 238 -24 405 0 0 0 chr12 52341747 52341792 -91940697 + (CA)n Simple_repeat Simple_repeat 1 45 0 208 335 106 41 chr12 52342292 52342585 -91939904 - L2 LINE L2 -108 3164 2853 2160 108 7 0 chr12 52342695 52342992 -91939497 + AluSg SINE Alu 1 299 -11 2179 70 49 0 chr12 52344199 52344485 -91938004 + AluY SINE Alu 2 301 -10 270 0 0 0 chr12 52345724 52345754 -91936735 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 497 266 85 43 chr12 52346062 52346250 -91936239 - MIR SINE MIR -39 223 28 185 214 29 43 chr12 52346619 52346689 -91935800 - L2 LINE L2 -294 2978 2910 491 245 46 33 chr12 52346738 52346889 -91935600 - MIR SINE MIR -38 170 18 203 200 108 0 chr12 52348593 52348658 -91933831 + (GGATG)n Simple_repeat Simple_repeat 5 76 0 30 59 0 0 chr12 52350521 52350572 -91931917 + GC_rich Low_complexity Low_complexity 1 51 0 29 94 0 0 chr12 52351777 52351862 -91930627 + GC_rich Low_complexity Low_complexity 1 85 0 22 0 0 0 chr12 52352458 52352480 -91930009 + AT_rich Low_complexity Low_complexity 1 22 0 2111 114 0 0 chr12 52352492 52352798 -91929691 - AluSx SINE Alu -6 306 1 705 209 58 23 chr12 52352801 52352973 -91929516 + MIR SINE MIR 81 258 -4 471 153 7 44 chr12 52353071 52353208 -91929281 + GA-rich Low_complexity Low_complexity 3 134 0 261 287 31 62 chr12 52353225 52353354 -91929135 - MIR SINE MIR -73 135 11 647 259 19 6 chr12 52353572 52353734 -91928755 - MIR SINE MIR -11 251 88 2077 121 3 0 chr12 52354147 52354452 -91928037 - AluSx SINE Alu -6 306 1 319 292 14 49 chr12 52355075 52355219 -91927270 + MIR SINE MIR 4 142 -120 2127 125 0 0 chr12 52355257 52355568 -91926921 + AluSx SINE Alu 1 311 -1 827 228 119 9 chr12 52355616 52355835 -91926654 + MIR SINE MIR 20 262 0 243 0 0 0 chr12 52356138 52356165 -91926324 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 232 300 193 20 chr12 52356371 52356679 -91925810 + L1MC/D LINE L1 4083 4337 -1809 2106 132 33 14 chr12 52356679 52357044 -91925445 - THE1C LTR MaLR -3 372 1 232 300 193 20 chr12 52357044 52357228 -91925261 + L1MC/D LINE L1 4337 4660 -1486 527 341 89 35 chr12 52357298 52357437 -91925052 + L1MC/D LINE L1 4672 4802 -1344 2073 119 0 7 chr12 52357437 52357739 -91924750 + AluSx SINE Alu 1 300 -12 527 341 89 35 chr12 52357739 52357949 -91924540 + L1MC/D LINE L1 4802 4999 -1147 2074 123 0 3 chr12 52357949 52358249 -91924240 + AluSx SINE Alu 1 299 -13 527 341 89 35 chr12 52358249 52358438 -91924051 + L1MC/D LINE L1 4999 5240 -906 495 253 178 8 chr12 52358452 52358705 -91923784 + L1MC/D LINE L1 5254 5549 -2259 417 254 12 73 chr12 52358752 52358795 -91923694 + L1MC/D LINE L1 5654 5698 -2110 1603 131 54 34 chr12 52358795 52359092 -91923397 + AluJo SINE Alu 1 303 -9 417 254 12 73 chr12 52359092 52359213 -91923276 + L1MC/D LINE L1 5698 5808 -2000 501 308 174 35 chr12 52359238 52359943 -91922546 - L2 LINE L2 -512 2802 2000 226 269 64 0 chr12 52360603 52360681 -91921808 + L2 LINE L2 2983 3065 -248 364 264 0 11 chr12 52360846 52360933 -91921556 + L2 LINE L2 3228 3313 0 1980 116 24 3 chr12 52361515 52361809 -91920680 - AluSq SINE Alu -13 300 1 2213 226 68 22 chr12 52361820 52362114 -91920375 - L1MEc LINE L1 -5451 945 666 515 81 12 0 chr12 52362114 52362200 -91920289 + (TTTTG)n Simple_repeat Simple_repeat 2 88 0 2213 226 68 22 chr12 52362200 52362619 -91919870 - L1MEc LINE L1 -5730 666 45 26 30 0 0 chr12 52362742 52362775 -91919714 + AT_rich Low_complexity Low_complexity 1 33 0 2388 63 3 0 chr12 52363214 52363517 -91918972 + AluY SINE Alu 1 304 -7 21 0 0 0 chr12 52363655 52363676 -91918813 + AT_rich Low_complexity Low_complexity 1 21 0 1330 157 0 48 chr12 52363676 52363924 -91918565 - AluJb SINE Alu -18 294 59 1624 204 82 3 chr12 52363933 52364261 -91918228 - MSTD LTR MaLR -42 354 1 2076 97 13 13 chr12 52364331 52364641 -91917848 - AluSx SINE Alu -2 310 1 1880 134 0 20 chr12 52365174 52365479 -91917010 - AluJb SINE Alu -13 299 1 2234 91 3 0 chr12 52365793 52366089 -91916400 + AluSg SINE Alu 1 297 -13 2457 53 0 0 chr12 52366090 52366394 -91916095 + AluY SINE Alu 1 304 -7 1791 143 33 3 chr12 52367485 52367786 -91914703 - AluJb SINE Alu -2 310 1 23 0 0 0 chr12 52368080 52368103 -91914386 + AT_rich Low_complexity Low_complexity 1 23 0 1106 167 91 32 chr12 52368128 52368349 -91914140 - MER46A DNA MER2_type 0 236 3 2143 134 0 3 chr12 52368628 52368948 -91913541 + MER47A DNA MER2_type 1 319 -47 1479 148 50 36 chr12 52368949 52368979 -91913510 + AluJb SINE Alu 18 46 -266 2214 137 40 0 chr12 52368979 52369329 -91913160 - THE1B LTR MaLR 0 364 1 1479 148 50 36 chr12 52369329 52369576 -91912913 + AluJb SINE Alu 46 299 -13 425 138 0 0 chr12 52369576 52369634 -91912855 + MER47A DNA MER2_type 309 366 0 2108 98 0 30 chr12 52370934 52371239 -91911250 - AluSx SINE Alu -16 296 1 796 179 8 0 chr12 52371322 52371456 -91911033 - AluJo SINE Alu -176 136 2 1983 125 3 3 chr12 52371504 52371793 -91910696 + AluSx SINE Alu 1 289 -23 476 221 0 0 chr12 52372166 52372261 -91910228 + AluJo/FLAM SINE Alu 39 133 -179 2157 124 0 0 chr12 52372264 52372570 -91909919 + AluSx SINE Alu 1 306 -6 13279 146 30 19 chr12 52372573 52374564 -91907925 + L1PA15-16 LINE L1 1 2020 -4829 2414 69 0 0 chr12 52374564 52374868 -91907621 + AluY SINE Alu 1 304 -7 13279 146 30 19 chr12 52374868 52375014 -91907475 + L1PA15-16 LINE L1 2020 2163 -4686 1804 139 3 65 chr12 52375014 52375146 -91907343 + AluSx SINE Alu 1 140 -172 2128 119 0 0 chr12 52375146 52375440 -91907049 + AluSx SINE Alu 1 294 -18 1804 139 3 65 chr12 52375440 52375630 -91906859 + AluSx SINE Alu 140 303 -9 2465 44 0 0 chr12 52375634 52375927 -91906562 + AluY SINE Alu 1 293 -18 1707 243 41 37 chr12 52376111 52376646 -91905843 - L1MC4a LINE L1 -1921 5887 5351 369 286 161 19 chr12 52376648 52376809 -91905680 - L1MC4a LINE L1 -831 5315 5132 185 0 40 0 chr12 52376956 52376981 -91905508 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 2151 91 0 14 chr12 52377461 52377758 -91904731 - AluY SINE Alu -18 293 1 1061 53 0 8 chr12 52377834 52377965 -91904524 - MER85 DNA T2_type -9 130 1 234 0 0 0 chr12 52378529 52378555 -91903934 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 661 198 0 0 chr12 52378557 52378673 -91903816 - FLAM_A SINE Alu -17 116 1 2239 90 0 0 chr12 52379654 52379955 -91902534 - AluY SINE Alu -10 301 1 216 0 0 0 chr12 52380405 52380429 -91902060 + (TA)n Simple_repeat Simple_repeat 2 25 0 977 231 61 35 chr12 52380820 52381051 -91901438 - L1MEc LINE L1 -5215 1181 957 2184 92 27 0 chr12 52381051 52381346 -91901143 - AluSq SINE Alu -10 303 1 977 231 61 35 chr12 52381346 52381652 -91900837 - L1MEc LINE L1 -5439 957 660 515 81 12 0 chr12 52381652 52381738 -91900751 + (TTTTG)n Simple_repeat Simple_repeat 2 88 0 977 231 61 35 chr12 52381738 52382157 -91900332 - L1MEc LINE L1 -5736 660 45 26 30 0 0 chr12 52382280 52382313 -91900176 + AT_rich Low_complexity Low_complexity 1 33 0 2379 63 3 0 chr12 52382752 52383055 -91899434 + AluY SINE Alu 1 304 -7 21 0 0 0 chr12 52383193 52383214 -91899275 + AT_rich Low_complexity Low_complexity 1 21 0 1330 157 0 48 chr12 52383214 52383462 -91899027 - AluJb SINE Alu -18 294 59 1635 204 82 3 chr12 52383471 52383799 -91898690 - MSTD LTR MaLR -42 354 1 2076 97 13 13 chr12 52383869 52384179 -91898310 - AluSx SINE Alu -2 310 1 1845 134 0 23 chr12 52384711 52385017 -91897472 - AluJb SINE Alu -13 299 1 2199 91 3 3 chr12 52385331 52385628 -91896861 + AluSg SINE Alu 1 297 -13 2457 53 0 0 chr12 52385629 52385933 -91896556 + AluY SINE Alu 1 304 -7 1799 143 33 3 chr12 52387022 52387323 -91895166 - AluJb SINE Alu -2 310 1 23 0 0 0 chr12 52387617 52387640 -91894849 + AT_rich Low_complexity Low_complexity 1 23 0 1106 167 91 32 chr12 52387665 52387886 -91894603 - MER46A DNA MER2_type 0 236 3 2143 134 0 3 chr12 52388165 52388485 -91894004 + MER47A DNA MER2_type 1 319 -47 1479 148 50 36 chr12 52388486 52388516 -91893973 + AluJb SINE Alu 18 46 -266 2214 137 40 0 chr12 52388516 52388866 -91893623 - THE1B LTR MaLR 0 364 1 1479 148 50 36 chr12 52388866 52389113 -91893376 + AluJb SINE Alu 46 299 -13 425 138 0 0 chr12 52389113 52389171 -91893318 + MER47A DNA MER2_type 309 366 0 2108 98 0 30 chr12 52390471 52390776 -91891713 - AluSx SINE Alu -16 296 1 796 179 8 0 chr12 52390859 52390993 -91891496 - AluJo SINE Alu -176 136 2 2006 128 3 0 chr12 52391041 52391329 -91891160 + AluSx SINE Alu 1 289 -23 1509 164 47 7 chr12 52391528 52391826 -91890663 - AluSx SINE Alu -2 310 1 1742 119 26 4 chr12 52391828 52392097 -91890392 + AluSx SINE Alu 38 312 0 1630 133 34 55 chr12 52392241 52392534 -91889955 + AluJo SINE Alu 11 297 -15 1882 137 7 10 chr12 52392538 52392837 -91889652 + AluJb SINE Alu 3 300 -12 1552 145 112 0 chr12 52393197 52393466 -91889023 + AluSx SINE Alu 5 303 -9 363 259 69 8 chr12 52394203 52394334 -91888155 - L1MC4 LINE L1 -121 7921 7783 21 36 0 0 chr12 52394629 52394657 -91887832 + AT_rich Low_complexity Low_complexity 1 28 0 * 227 81 0 0 chr12 52394646 52394683 -91887806 - L1MA1 LINE L1 0 6302 6266 249 57 0 0 chr12 52395466 52395501 -91886988 + (TG)n Simple_repeat Simple_repeat 1 35 0 2515 40 7 3 chr12 52396130 52396426 -91886063 + AluY SINE Alu 1 297 -14 1790 146 48 27 chr12 52397990 52398112 -91884377 + AluJb SINE Alu 1 119 -193 2639 71 0 0 chr12 52398112 52398421 -91884068 + AluSc SINE Alu 1 309 0 297 0 0 0 chr12 52398423 52398456 -91884033 + (TA)n Simple_repeat Simple_repeat 1 33 0 1790 146 48 27 chr12 52398456 52398624 -91883865 + AluJb SINE Alu 119 300 -12 306 209 100 27 chr12 52398647 52398672 -91883817 - L1MC5 LINE L1 -35 7926 7904 2562 71 0 6 chr12 52398672 52398983 -91883506 + AluSc SINE Alu 1 309 0 306 209 100 27 chr12 52398983 52399067 -91883422 - L1MC5 LINE L1 -57 7904 7809 189 229 0 0 chr12 52399373 52399408 -91883081 - MIR3 SINE MIR -3 205 171 496 261 124 37 chr12 52399713 52399931 -91882558 - MLT1J LTR MaLR 0 511 275 265 252 71 40 chr12 52400662 52400845 -91881644 + L1MC/D LINE L1 5732 5921 -245 596 335 162 11 chr12 52401504 52402047 -91880442 + L2 LINE L2 2342 2966 -348 2288 91 0 29 chr12 52402061 52402228 -91880261 - AluSx SINE Alu -14 298 143 2416 91 0 0 chr12 52402228 52402525 -91879964 - AluSp SINE Alu -15 298 2 2288 91 0 29 chr12 52402525 52402664 -91879825 - AluSx SINE Alu -169 143 1 317 291 99 50 chr12 52402739 52402880 -91879609 + L2 LINE L2 3115 3262 -10 2202 117 20 0 chr12 52402967 52403265 -91879224 - AluSx SINE Alu -8 304 1 1580 173 9 64 chr12 52405439 52405768 -91876721 + AluJo SINE Alu 1 311 -1 2378 85 0 3 chr12 52405917 52406210 -91876279 + AluY SINE Alu 2 293 -18 2433 88 0 0 chr12 52409193 52409489 -91873000 + AluSg SINE Alu 1 296 -14 250 183 61 146 chr12 52410685 52410767 -91871722 - L1ME4a LINE L1 -65 6056 5993 800 206 90 0 chr12 52410767 52410922 -91871567 - FAM SINE Alu -5 170 2 250 183 61 146 chr12 52410922 52411003 -91871486 - L1ME4a LINE L1 -128 5993 5907 2229 102 3 0 chr12 52411003 52411286 -91871203 + AluSp SINE Alu 1 284 -29 2328 88 17 0 chr12 52411286 52411582 -91870907 + AluSc SINE Alu 1 302 -7 270 0 0 0 chr12 52412080 52412110 -91870379 + (T)n Simple_repeat Simple_repeat 1 30 0 2398 47 3 20 chr12 52412125 52412422 -91870067 + AluY SINE Alu 1 292 -19 2349 79 0 13 chr12 52412433 52412738 -91869751 + AluSx SINE Alu 5 305 -7 661 240 83 22 chr12 52413017 52413241 -91869248 - L1ME4a LINE L1 -309 5812 5586 1917 142 7 17 chr12 52413265 52413561 -91868928 - AluJo SINE Alu -19 293 1 202 250 0 23 chr12 52414318 52414362 -91868127 - L2 LINE L2 -23 3290 3248 2227 123 0 7 chr12 52414385 52414694 -91867795 - AluSx SINE Alu -1 311 5 278 286 105 72 chr12 52414773 52414927 -91867562 + MIR SINE MIR 10 170 -63 2377 90 0 3 chr12 52416039 52416340 -91866149 + AluSx SINE Alu 1 300 -12 1896 136 0 11 chr12 52416545 52416877 -91865612 - AluSx SINE Alu 0 333 5 324 294 14 42 chr12 52416919 52417062 -91865427 - MIR SINE MIR -120 142 4 206 263 12 25 chr12 52417639 52417685 -91864804 + A-rich Low_complexity Low_complexity 1 47 -32 2240 119 3 3 chr12 52417685 52417997 -91864492 + AluSx SINE Alu 1 312 0 206 263 12 25 chr12 52417997 52418030 -91864459 + A-rich Low_complexity Low_complexity 47 79 0 651 259 19 6 chr12 52418404 52418566 -91863923 + MIR SINE MIR 88 251 -11 267 287 31 62 chr12 52418784 52418913 -91863576 + MIR3 SINE MIR 11 135 -73 471 153 7 44 chr12 52418930 52419067 -91863422 + CT-rich Low_complexity Low_complexity 3 134 0 699 209 58 23 chr12 52419165 52419337 -91863152 - MIR SINE MIR -4 258 81 2258 114 0 0 chr12 52419340 52419646 -91862843 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr12 52419658 52419680 -91862809 + AT_rich Low_complexity Low_complexity 1 22 0 29 94 0 0 chr12 52420276 52420361 -91862128 + GC_rich Low_complexity Low_complexity 1 85 0 30 59 0 0 chr12 52421566 52421617 -91860872 + GC_rich Low_complexity Low_complexity 1 51 0 203 200 108 0 chr12 52423480 52423545 -91858944 + (CATCC)n Simple_repeat Simple_repeat 5 76 0 570 179 96 62 chr12 52425364 52425403 -91857086 - L1M4 LINE L1 -747 5399 5363 2141 129 10 3 chr12 52425403 52425706 -91856783 - AluJb SINE Alu -7 305 1 570 179 96 62 chr12 52425706 52425906 -91856583 - L1M4 LINE L1 -783 5363 5152 23 0 0 0 chr12 52425926 52425949 -91856540 + AT_rich Low_complexity Low_complexity 1 23 0 1580 77 0 64 chr12 52425949 52426072 -91856417 - L1PB1 LINE L1 -7 6144 6041 2308 85 7 3 chr12 52426072 52426366 -91856123 - AluY SINE Alu -16 295 1 1580 77 0 64 chr12 52426366 52426475 -91856014 - L1PB1 LINE L1 -110 6041 5927 3499 133 4 18 chr12 52426475 52427032 -91855457 - L1PA16 LINE L1 -12 6154 5605 2506 82 0 9 chr12 52427032 52427348 -91855141 - AluSq SINE Alu 0 313 1 2138 127 13 3 chr12 52427350 52427657 -91854832 - AluJb SINE Alu -2 310 1 2544 71 0 0 chr12 52427672 52427969 -91854520 - AluY SINE Alu -14 297 1 3247 234 20 40 chr12 52428022 52428568 -91853921 - L1P LINE L1 -3199 2947 2431 1574 121 18 0 chr12 52428568 52428792 -91853697 + MER30 DNA MER1_type 2 229 -1 3247 234 20 40 chr12 52428792 52429328 -91853161 - L1P LINE L1 -3715 2431 1886 252 0 0 0 chr12 52429328 52429356 -91853133 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2111 99 7 7 chr12 52429358 52429640 -91852849 - AluSq SINE Alu -31 282 1 361 306 88 0 chr12 52429849 52430009 -91852480 - L1M4 LINE L1 -1486 4660 4487 2103 131 33 16 chr12 52430033 52430399 -91852090 + THE1C LTR MaLR 1 372 -3 368 301 170 29 chr12 52430515 52430791 -91851698 - L1M4 LINE L1 -1841 4305 3991 821 228 119 9 chr12 52431244 52431463 -91851026 - MIR SINE MIR 0 262 20 1967 148 0 3 chr12 52431512 52431823 -91850666 - AluJb SINE Alu 0 310 1 2231 91 48 30 chr12 52431978 52432309 -91850180 + MER1B DNA MER1_type 1 337 0 847 254 108 20 chr12 52432363 52432705 -91849784 + L2 LINE L2 2043 2414 -900 753 255 187 37 chr12 52432716 52433219 -91849270 - L2 LINE L2 -4 3309 2526 1700 309 27 11 chr12 52433231 52433875 -91848614 + L2 LINE L2 2422 3072 -241 2100 112 7 0 chr12 52434186 52434464 -91848025 + AluSx SINE Alu 7 286 -26 2398 73 13 3 chr12 52434523 52434824 -91847665 + AluY SINE Alu 1 304 -7 2421 68 7 0 chr12 52435320 52435612 -91846877 - AluSc SINE Alu -14 295 2 265 248 133 9 chr12 52435615 52435720 -91846769 - FLAM_A SINE Alu -1 132 15 1503 168 15 30 chr12 52436404 52436672 -91845817 + AluJo SINE Alu 39 302 -10 234 355 68 52 chr12 52437059 52437310 -91845179 + L3b LINE CR1 1110 1364 -219 594 252 176 0 chr12 52437362 52437584 -91844905 + MIR SINE MIR 2 262 0 1977 156 0 0 chr12 52439406 52439752 -91842737 + AluSx SINE Alu 1 346 0 204 305 110 8 chr12 52441804 52441922 -91840567 + MIR SINE MIR 117 246 -16 195 69 0 0 chr12 52444943 52444972 -91837517 + (G)n Simple_repeat Simple_repeat 1 29 0 271 267 17 41 chr12 52445007 52445194 -91837295 + (GGGTG)n Simple_repeat Simple_repeat 1 182 0 200 100 25 0 chr12 52445229 52445269 -91837220 + (TGGGGG)n Simple_repeat Simple_repeat 2 42 0 363 204 16 70 chr12 52445299 52445485 -91837004 + (GGGTG)n Simple_repeat Simple_repeat 4 179 0 303 295 242 0 chr12 52446819 52446968 -91835521 + MIR3 SINE MIR 21 205 -3 303 239 22 101 chr12 52447034 52447172 -91835317 - L2 LINE L2 -2 3311 3185 386 266 78 0 chr12 52447184 52447312 -91835177 + MER104 DNA Tc2 4 141 -39 794 314 132 21 chr12 52447506 52447984 -91834505 - L2 LINE L2 -382 2932 2402 1995 99 28 0 chr12 52448245 52448549 -91833940 - AluSx SINE Alu 0 312 1 1823 93 27 40 chr12 52448557 52448857 -91833632 - AluY SINE Alu -11 300 5 702 277 92 10 chr12 52449052 52449355 -91833134 - L1MC4a LINE L1 -1854 5954 5627 591 309 126 20 chr12 52449386 52449680 -91832809 - L2 LINE L2 -1 3312 2988 26 30 0 0 chr12 52457119 52457152 -91825337 + GC_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr12 52457748 52457770 -91824719 + AT_rich Low_complexity Low_complexity 1 22 0 2145 114 0 0 chr12 52457782 52458089 -91824400 - AluSx SINE Alu -5 307 1 658 209 58 23 chr12 52458092 52458264 -91824225 + MIR SINE MIR 81 258 -4 471 153 7 44 chr12 52458362 52458499 -91823990 + GA-rich Low_complexity Low_complexity 3 134 0 261 287 31 62 chr12 52458516 52458645 -91823844 - MIR SINE MIR -73 135 11 628 279 17 6 chr12 52458853 52459025 -91823464 - MIR SINE MIR -1 261 88 2104 125 3 0 chr12 52459399 52459743 -91822746 - AluSx SINE Alu 0 345 1 392 257 157 29 chr12 52461709 52461849 -91820640 + MIR SINE MIR 95 252 -10 2294 97 3 0 chr12 52461859 52462169 -91820320 - AluSx SINE Alu -1 311 1 563 290 63 29 chr12 52462321 52462559 -91819930 + MIR SINE MIR 15 260 -2 1819 108 12 0 chr12 52463515 52463773 -91818716 + AluSx SINE Alu 37 297 -15 2432 177 107 2 chr12 52464185 52464642 -91817847 - MLT1D LTR MaLR 0 505 1 2397 77 0 3 chr12 52465322 52465633 -91816856 + AluY SINE Alu 1 310 -1 233 184 20 0 chr12 52465659 52465708 -91816781 + L2 LINE L2 2201 2250 -1064 2068 251 49 39 chr12 52465853 52466470 -91816019 + L2 LINE L2 2266 2888 -426 234 333 0 0 chr12 52466679 52466766 -91815723 + G-rich Low_complexity Low_complexity 1 87 0 296 258 18 61 chr12 52467122 52467249 -91815240 + MIR3 SINE MIR 73 193 -27 2350 61 17 0 chr12 52467543 52467838 -91814651 + AluSp SINE Alu 1 300 -13 330 226 0 0 chr12 52468239 52468301 -91814188 + MIR SINE MIR 15 76 -186 1140 110 18 6 chr12 52468416 52468580 -91813909 - AluJo SINE Alu -146 166 1 246 375 39 0 chr12 52468583 52468687 -91813802 - L2 LINE L2 -781 2533 2426 327 378 32 9 chr12 52468712 52468929 -91813560 - L1ME LINE L1 -370 5751 5530 2163 80 7 10 chr12 52468989 52469290 -91813199 + AluSq SINE Alu 1 300 -13 229 318 23 53 chr12 52470023 52470155 -91812334 + MIR3 SINE MIR 65 192 -16 452 355 81 38 chr12 52470361 52471317 -91811172 + L2 LINE L2 2226 3233 -39 563 253 100 6 chr12 52471679 52471849 -91810640 + MER8 DNA MER2_type 53 238 -1 679 171 82 0 chr12 52471849 52471995 -91810494 + MER2 DNA MER2_type 188 345 0 328 289 65 65 chr12 52472803 52473004 -91809485 - MER20 DNA MER1_type -17 202 2 307 356 64 43 chr12 52473049 52473282 -91809207 - MIR SINE MIR -4 258 21 328 325 97 53 chr12 52474145 52474373 -91808116 + L2 LINE L2 2560 2797 -517 1195 260 62 3 chr12 52474668 52474960 -91807529 + MLT1J LTR MaLR 3 311 -200 216 0 0 0 chr12 52475060 52475084 -91807405 + (T)n Simple_repeat Simple_repeat 1 24 0 206 272 11 11 chr12 52475910 52476002 -91806487 + CT-rich Low_complexity Low_complexity 6 97 0 207 314 171 9 chr12 52476491 52476596 -91805893 - L2 LINE L2 -49 3223 3102 323 239 335 6 chr12 52477316 52477492 -91804997 + MIR SINE MIR 23 256 -6 188 326 84 11 chr12 52477812 52477907 -91804582 + MIR SINE MIR 26 127 -135 698 295 25 37 chr12 52478032 52478276 -91804213 + MIR SINE MIR 9 249 -13 207 0 0 0 chr12 52482141 52482164 -91800325 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr12 52484967 52484988 -91797501 + AT_rich Low_complexity Low_complexity 1 21 0 237 312 35 77 chr12 52486630 52486800 -91795689 + L2 LINE L2 3014 3176 -96 244 299 102 24 chr12 52487852 52488019 -91794470 - L3b LINE CR1 -125 1458 1279 541 302 80 44 chr12 52488418 52488779 -91793710 + Charlie8 DNA MER1_type 90 463 -1954 595 255 35 0 chr12 52488798 52488939 -91793550 + MIR SINE MIR 1 146 -116 30 0 0 0 chr12 52489100 52489130 -91793359 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr12 52492572 52492618 -91789871 + GC_rich Low_complexity Low_complexity 1 46 0 205 241 0 0 chr12 52492710 52492764 -91789725 + C-rich Low_complexity Low_complexity 1 54 0 785 233 85 56 chr12 52493054 52493359 -91789130 - HAL1 LINE L1 -741 1766 1453 227 273 11 71 chr12 52493378 52493561 -91788928 + CT-rich Low_complexity Low_complexity 4 175 0 213 321 7 42 chr12 52493479 52493731 -91788758 + C-rich Low_complexity Low_complexity 1 243 0 * 814 113 8 8 chr12 52548313 52548437 -91734052 - HERVE LTR ERV1 -7428 385 262 * 2493 132 5 25 chr12 52548430 52548825 -91733664 - HERVE LTR ERV1 -6509 387 1 2002 185 68 32 chr12 52548825 52549268 -91733221 - LTR2B LTR ERV1 0 490 32 207 0 0 0 chr12 52549630 52549653 -91732836 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2095 118 0 0 chr12 52549738 52550034 -91732455 - AluSg SINE Alu -13 297 2 2073 88 37 3 chr12 52550084 52550378 -91732111 - AluSp SINE Alu -9 304 1 1888 104 6 60 chr12 52550882 52551198 -91731291 + AluSx SINE Alu 1 299 -13 265 211 35 0 chr12 52551676 52551733 -91730756 + MIR SINE MIR 195 253 -9 286 283 58 25 chr12 52552127 52552247 -91730242 + MIR SINE MIR 24 147 -61 357 274 36 0 chr12 52553018 52553102 -91729387 + L2 LINE L2 3185 3271 -1 2190 144 5 32 chr12 52553250 52553625 -91728864 + MLT1A1 LTR MaLR 1 365 0 334 258 192 24 chr12 52553686 52553853 -91728636 + L1MC4a LINE L1 5878 6072 -1736 1811 134 35 3 chr12 52553853 52554143 -91728346 - AluSx SINE Alu -12 300 2 1275 162 38 4 chr12 52555734 52555969 -91726520 - AluJb SINE Alu -10 302 60 24 0 0 0 chr12 52555969 52555993 -91726496 + AT_rich Low_complexity Low_complexity 1 24 0 1713 144 7 0 chr12 52555994 52556271 -91726218 - AluSx SINE Alu -20 292 14 261 340 30 30 chr12 52556523 52556623 -91725866 + MIR3 SINE MIR 4 103 -105 325 287 34 42 chr12 52556689 52556814 -91725675 - MIR SINE MIR -64 144 41 183 184 69 81 chr12 52556848 52556935 -91725554 + MIR SINE MIR 131 216 -46 22 0 0 0 chr12 52556936 52556958 -91725531 + AT_rich Low_complexity Low_complexity 1 22 0 1489 183 43 62 chr12 52558100 52558193 -91724296 + MER47A DNA MER2_type 1 94 -2229 2213 95 0 3 chr12 52558193 52558487 -91724002 + AluSx SINE Alu 1 293 -19 1489 183 43 62 chr12 52558487 52558765 -91723724 + MER47A DNA MER2_type 94 365 -1 471 244 104 0 chr12 52559738 52559873 -91722616 + MIR3 SINE MIR 58 206 -2 233 234 43 64 chr12 52560302 52560396 -91722093 - L3b LINE CR1 -154 1429 1338 576 207 80 22 chr12 52561273 52561459 -91721030 - MIR3 SINE MIR -2 206 8 2146 114 0 7 chr12 52562830 52563138 -91719351 - AluSg SINE Alu -4 306 1 2823 185 19 43 chr12 52563650 52563850 -91718639 - MER69 DNA AcHobo -11 2515 2312 2178 61 17 3 chr12 52563850 52564143 -91718346 + AluY SINE Alu 1 297 -14 2823 185 19 43 chr12 52564143 52564634 -91717855 - MER69 DNA AcHobo -214 2312 1841 2694 224 88 34 chr12 52564631 52564922 -91717567 - MER69 DNA AcHobo -1772 754 480 * 2451 39 13 0 chr12 52564922 52565228 -91717261 - AluY SINE Alu -1 310 1 2694 224 88 34 chr12 52565228 52565651 -91716838 - MER69 DNA AcHobo -2046 480 1 1956 135 3 0 chr12 52565957 52566245 -91716244 + AluSq SINE Alu 1 289 -24 210 37 0 0 chr12 52566245 52566272 -91716217 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 263 189 37 17 chr12 52566516 52566586 -91715903 - MIR SINE MIR -62 146 89 784 233 134 62 chr12 52566593 52567010 -91715479 - MLT1J2 LTR MaLR 0 450 4 456 231 23 23 chr12 52567444 52567574 -91714915 - LTR67 LTR ERVL 0 557 428 644 229 19 88 chr12 52567619 52567824 -91714665 + MLT1J LTR MaLR 224 414 -97 4138 75 30 8 chr12 52568347 52569246 -91713243 + Harlequin LTR ERV1 415 1410 -5486 * 29850 62 13 4 chr12 52569229 52572961 -91709528 + Harlequin LTR ERV1 1799 5565 -1331 2839 128 9 12 chr12 52572942 52573363 -91709126 + Harlequin LTR ERV1 6477 6896 0 * 1695 176 140 34 chr12 52573382 52573797 -91708692 + LTR2B LTR ERV1 32 490 0 2143 101 3 3 chr12 52573834 52574131 -91708358 - AluSx SINE Alu -15 297 1 277 167 21 0 chr12 52574317 52574365 -91708124 - MER69 DNA AcHobo -127 50 2 537 271 28 17 chr12 52576162 52576339 -91706150 - AluJb SINE Alu -132 180 2 1952 118 3 7 chr12 52576383 52576689 -91705800 - AluSg SINE Alu -5 305 1 1169 69 0 13 chr12 52576702 52576861 -91705628 - AluSg/x SINE Alu -7 303 147 1628 138 20 37 chr12 52577009 52577306 -91705183 - AluJb SINE Alu -19 293 2 1826 158 210 19 chr12 52577443 52577867 -91704622 - MLT1D LTR MaLR 0 505 1 272 254 173 96 chr12 52578451 52578723 -91703766 - L2 LINE L2 -798 2516 2212 2765 10 0 0 chr12 52578723 52579034 -91703455 - AluYa5 SINE Alu 0 311 1 272 254 173 96 chr12 52579034 52579096 -91703393 - L2 LINE L2 -1102 2212 2156 204 190 61 24 chr12 52579117 52579182 -91703307 + MER5B DNA MER1_type 9 64 -114 219 234 21 0 chr12 52579132 52579179 -91703310 - MER5A DNA MER1_type -13 176 129 25 51 0 0 chr12 52579220 52579259 -91703230 + AT_rich Low_complexity Low_complexity 1 39 0 263 54 90 0 chr12 52579291 52579348 -91703141 + L1MB3 LINE L1 6114 6180 0 1844 120 46 0 chr12 52581146 52581429 -91701060 - AluSx SINE Alu -16 296 1 715 239 18 22 chr12 52581587 52581809 -91700680 + L1ME3A LINE L1 5731 5951 -219 1542 186 29 0 chr12 52581955 52582252 -91700237 - AluJb SINE Alu 0 306 2 1203 142 46 14 chr12 52582254 52582472 -91700017 - AluJb SINE Alu -3 309 85 276 169 0 34 chr12 52582508 52582567 -91699922 + L1MC/D LINE L1 5769 5825 -1983 2378 41 3 0 chr12 52583526 52583821 -91698668 - AluY SINE Alu -15 296 1 333 281 74 0 chr12 52584714 52584835 -91697654 - MIR SINE MIR -54 208 79 356 311 48 19 chr12 52584879 52584982 -91697507 - MIR3 SINE MIR -33 175 70 720 294 106 8 chr12 52585113 52585348 -91697141 - MIR SINE MIR -2 260 3 2024 118 7 16 chr12 52585931 52586237 -91696252 - AluSx SINE Alu -9 303 1 1872 187 81 36 chr12 52586249 52586720 -91695769 - L1ME2 LINE L1 -21 6143 5652 1938 123 0 78 chr12 52587041 52587374 -91695115 - AluSx SINE Alu -5 307 1 1727 163 42 0 chr12 52588077 52588366 -91694123 - AluJo SINE Alu -11 301 1 669 317 167 52 chr12 52588776 52589491 -91692998 - L2 LINE L2 -539 2775 2144 1009 227 37 52 chr12 52589491 52589839 -91692650 - MER2 DNA MER2_type 0 344 2 669 317 167 52 chr12 52589839 52589935 -91692554 - L2 LINE L2 -1170 2144 2060 829 146 0 29 chr12 52589935 52590072 -91692417 - FLAM_C SINE Alu 0 133 1 669 317 167 52 chr12 52590072 52590149 -91692340 - L2 LINE L2 -1254 2060 1783 2100 117 10 0 chr12 52590149 52590456 -91692033 + AluSx SINE Alu 1 310 -2 21 71 0 0 chr12 52590551 52590593 -91691896 + AT_rich Low_complexity Low_complexity 1 42 0 1732 183 7 7 chr12 52590729 52591035 -91691454 - AluJb SINE Alu -6 306 1 2014 96 0 27 chr12 52591072 52591373 -91691116 - AluSg SINE Alu -2 308 16 321 226 48 0 chr12 52591373 52591435 -91691054 - Tigger3(Golem) DNA MER2_type -2964 65 1 623 205 110 13 chr12 52591438 52591587 -91690902 - MIR SINE MIR -65 143 35 313 327 63 13 chr12 52591585 52591744 -91690745 + L2 LINE L2 2450 2616 -698 * 295 234 95 22 chr12 52591758 52591895 -91690594 - L1MC5 LINE L1 -30 7931 7785 1705 126 53 43 chr12 52592210 52592381 -91690108 - AluSg SINE Alu -5 305 128 2221 76 0 13 chr12 52592381 52592685 -91689804 - AluY SINE Alu -11 300 1 1705 126 53 43 chr12 52592685 52592815 -91689674 - AluSg SINE Alu -182 128 1 283 195 79 85 chr12 52593060 52593128 -91689361 - L1MC5 LINE L1 -181 7780 7713 2241 79 7 0 chr12 52593128 52593431 -91689058 - AluSx SINE Alu -7 305 1 283 195 79 85 chr12 52593431 52593526 -91688963 - L1MC5 LINE L1 -248 7713 7618 1752 205 131 28 chr12 52593532 52594005 -91688484 - MLT1F LTR MaLR -7 535 14 2246 107 0 0 chr12 52594067 52594376 -91688113 - AluSx SINE Alu -3 309 1 401 157 29 39 chr12 52594383 52594485 -91688004 - L1MC5 LINE L1 -384 7577 7477 379 209 96 26 chr12 52594547 52594662 -91687827 - L1MA8 LINE L1 0 6291 6169 1383 161 78 4 chr12 52594695 52594937 -91687552 - AluJb SINE Alu -52 260 1 2161 111 10 0 chr12 52594980 52595287 -91687202 + AluSx SINE Alu 1 310 -2 747 178 0 15 chr12 52596123 52596258 -91686231 + AluJo SINE Alu 1 133 -169 689 120 37 0 chr12 52596259 52596367 -91686122 + AluJo SINE Alu 187 298 -14 280 252 155 0 chr12 52596606 52596709 -91685780 - L2 LINE L2 -18 3254 3136 294 263 121 20 chr12 52596738 52596837 -91685652 - L2 LINE L2 -274 3039 2931 264 205 141 13 chr12 52596950 52597028 -91685461 - MIR SINE MIR -83 179 92 379 228 89 10 chr12 52597332 52597433 -91685056 + MIR SINE MIR 106 214 -48 252 0 0 0 chr12 52597779 52597807 -91684682 + (TG)n Simple_repeat Simple_repeat 2 29 0 885 179 6 19 chr12 52597872 52598034 -91684455 - FRAM SINE Alu -16 160 1 212 225 0 0 chr12 52600706 52600746 -91681743 + G-rich Low_complexity Low_complexity 1 40 0 333 236 27 100 chr12 52600874 52600984 -91681505 + MIR SINE MIR 31 132 -76 1693 176 170 20 chr12 52601008 52601456 -91681033 + Charlie1b DNA MER1_type 1 515 -8 689 199 14 27 chr12 52601470 52601616 -91680873 + MER3 DNA MER1_type 1 144 -65 184 323 81 21 chr12 52601863 52602049 -91680440 + L2 LINE L2 1350 1546 -1768 833 164 23 58 chr12 52602160 52602331 -91680158 + AluJo SINE Alu 137 301 -1 187 259 106 12 chr12 52602472 52602557 -91679932 + L2 LINE L2 1901 1993 -1321 1825 193 62 21 chr12 52602563 52602901 -91679588 - L1MB8 LINE L1 0 6178 5814 2349 97 13 6 chr12 52602901 52603212 -91679277 - AluSq SINE Alu 0 313 1 1825 193 62 21 chr12 52603212 52603344 -91679145 - L1MB8 LINE L1 -364 5814 5689 1042 182 14 19 chr12 52603344 52603553 -91678936 + MER2 DNA MER2_type 2 209 -136 25 31 0 0 chr12 52603554 52603586 -91678903 + AT_rich Low_complexity Low_complexity 1 32 0 2053 152 25 72 chr12 52603648 52604050 -91678439 - L1MB8 LINE L1 -490 5688 5269 2328 119 0 0 chr12 52604050 52604360 -91678129 - AluSx SINE Alu -2 310 1 1233 238 65 4 chr12 52604364 52604641 -91677848 - AluJo SINE Alu -18 294 1 2053 152 25 72 chr12 52604641 52604694 -91677795 - L1MB8 LINE L1 -912 5266 5236 180 0 0 0 chr12 52604694 52604714 -91677775 + (TA)n Simple_repeat Simple_repeat 2 21 0 2053 152 25 72 chr12 52604714 52604732 -91677757 - L1MB8 LINE L1 -942 5236 5219 379 189 0 0 chr12 52604832 52604906 -91677583 + AluSp/q SINE Alu 226 299 -4 4431 131 56 28 chr12 52604951 52605822 -91676667 + L1MA6 LINE L1 5400 6295 -5 2413 90 3 0 chr12 52605824 52606125 -91676364 + AluY SINE Alu 1 302 -9 2366 113 0 0 chr12 52606134 52606443 -91676046 + AluSc SINE Alu 1 309 0 829 202 15 54 chr12 52606453 52606469 -91676020 + AluJo SINE Alu 117 132 -180 1737 166 7 17 chr12 52606469 52606605 -91675884 + AluJo SINE Alu 1 137 -175 2111 108 42 3 chr12 52606605 52606893 -91675596 + AluSx SINE Alu 1 299 -13 1737 166 7 17 chr12 52606893 52607058 -91675431 + AluJo SINE Alu 137 299 -13 829 202 15 54 chr12 52607058 52607244 -91675245 + AluJo SINE Alu 132 311 -1 2057 128 10 13 chr12 52607319 52607631 -91674858 - AluSx SINE Alu -1 311 1 265 198 74 142 chr12 52607835 52607909 -91674580 - L1ME LINE L1 -408 5713 5636 1850 185 0 3 chr12 52607909 52608207 -91674282 + AluJo SINE Alu 3 299 -13 265 198 74 142 chr12 52608207 52608248 -91674241 - L1ME LINE L1 -485 5636 5609 1711 163 21 0 chr12 52608248 52608536 -91673953 - AluJb SINE Alu -18 294 1 265 198 74 142 chr12 52608536 52608581 -91673908 - L1ME LINE L1 -512 5609 5563 2187 226 227 18 chr12 52608663 52609402 -91673087 - L2 LINE L2 -499 2815 1922 946 187 0 6 chr12 52609402 52609568 -91672921 + FRAM SINE Alu 1 164 -12 548 180 172 0 chr12 52609575 52609697 -91672792 - L2 LINE L2 -1390 1924 1782 859 153 45 13 chr12 52609700 52609857 -91672632 + FRAM SINE Alu 6 167 -9 367 160 0 80 chr12 52609899 52609974 -91672515 + FRAM/FAM SINE Alu 14 82 -93 2322 102 0 16 chr12 52610014 52610318 -91672171 - AluSx SINE Alu -13 299 1 1056 129 14 0 chr12 52610488 52610635 -91671854 - AluSg/x SINE Alu -20 290 142 1100 224 90 12 chr12 52610675 52610996 -91671493 - L1MC4 LINE L1 -149 7893 7548 524 239 75 0 chr12 52610999 52611158 -91671331 - L1MC4a LINE L1 -479 7329 7159 * 1576 195 77 0 chr12 52611156 52611494 -91670995 - L1MC4 LINE L1 -954 7088 6725 741 163 7 37 chr12 52611532 52611667 -91670822 + FLAM_A SINE Alu 3 133 0 2176 106 7 0 chr12 52611721 52612005 -91670484 + AluSc SINE Alu 1 286 -23 767 114 20 20 chr12 52612005 52612154 -91670335 + GA-rich Low_complexity Low_complexity 1 149 0 1582 229 180 16 chr12 52612154 52612670 -91669819 - L2 LINE L2 -1668 1646 1046 980 171 0 0 chr12 52612670 52612822 -91669667 - FRAM SINE Alu -8 168 17 511 269 30 55 chr12 52612822 52613023 -91669466 - L2 LINE L2 -2281 1033 838 2322 145 27 46 chr12 52613037 52613250 -91669239 + MLT1C LTR MaLR 1 217 -250 2309 112 83 9 chr12 52613250 52613599 -91668890 - THE1C LTR MaLR 0 375 1 2322 145 27 46 chr12 52613599 52613861 -91668628 + MLT1C LTR MaLR 217 467 0 1363 241 157 77 chr12 52613861 52613994 -91668495 - L2 LINE L2 -2476 838 717 1954 137 7 3 chr12 52613994 52614286 -91668203 + AluJb SINE Alu 1 293 -19 2100 127 7 0 chr12 52614293 52614585 -91667904 + AluSq SINE Alu 7 300 -13 1363 241 157 77 chr12 52614585 52615069 -91667420 - L2 LINE L2 -2602 712 163 897 277 34 0 chr12 52615478 52615713 -91666776 - MIR SINE MIR -6 256 14 2244 132 0 0 chr12 52615719 52616030 -91666459 + AluSx SINE Alu 1 311 -1 815 111 0 0 chr12 52616511 52616619 -91665870 + AluJb SINE Alu 1 108 -204 341 333 179 10 chr12 52617107 52617308 -91665181 - L2 LINE L2 -29 3243 3009 2220 94 20 3 chr12 52617309 52617606 -91664883 + AluSx SINE Alu 1 302 -10 312 322 14 35 chr12 52618029 52618172 -91664317 - L2 LINE L2 -676 2638 2499 1715 183 7 68 chr12 52618172 52618357 -91664132 - L1MD2 LINE L1 -495 5864 5669 2252 105 17 0 chr12 52618357 52618651 -91663838 - AluSx SINE Alu -13 299 1 1715 183 7 68 chr12 52618651 52618998 -91663491 - L1MD2 LINE L1 -690 5669 5392 1106 147 5 42 chr12 52619000 52619190 -91663299 - AluJb SINE Alu -8 304 122 287 120 20 0 chr12 52619190 52619240 -91663249 - L1MD2 LINE L1 -2389 5396 5346 2552 75 0 0 chr12 52619291 52619597 -91662892 + AluY SINE Alu 1 306 -5 1702 95 0 58 chr12 52619609 52619852 -91662637 + AluSq SINE Alu 1 229 -84 240 35 0 0 chr12 52619864 52619893 -91662596 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 226 338 55 0 chr12 52619905 52620050 -91662439 + L2 LINE L2 2238 2390 -924 192 308 31 0 chr12 52620056 52620121 -91662368 - MIR SINE MIR -3 259 193 982 164 0 18 chr12 52620127 52620298 -91662191 - Tigger3(Golem) DNA MER2_type -54 2975 2808 2363 82 0 3 chr12 52620418 52620710 -91661779 - AluSx SINE Alu -1 311 21 597 256 44 66 chr12 52620798 52621025 -91661464 - MIR SINE MIR 0 262 41 189 107 0 0 chr12 52621115 52621143 -91661346 + (GAA)n Simple_repeat Simple_repeat 3 30 0 2169 118 0 10 chr12 52621178 52621484 -91661005 - AluSx SINE Alu -9 303 1 264 206 32 0 chr12 52621618 52621681 -91660808 - AluJ/monomer SINE Alu 0 301 237 1711 180 4 0 chr12 52621683 52621955 -91660534 - AluJo SINE Alu -39 273 1 2199 112 0 10 chr12 52622243 52622548 -91659941 - AluSg SINE Alu -8 302 1 228 35 0 0 chr12 52622551 52622580 -91659909 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 223 254 127 14 chr12 52623037 52623108 -91659381 + MER91C DNA MER1_type 16 94 -46 228 164 0 66 chr12 52623588 52623649 -91658840 + HsTC2 DNA Tc2 2 58 -1840 392 176 68 0 chr12 52623685 52623759 -91658730 - Tigger5 DNA MER2_type 0 2323 2245 2214 120 0 22 chr12 52623764 52624080 -91658409 - AluSx SINE Alu -3 309 1 324 197 14 14 chr12 52624087 52624158 -91658331 + Tigger5 DNA MER2_type 2247 2317 -6 908 141 201 77 chr12 52625562 52625861 -91656628 + L1MC4 LINE L1 7704 8039 -3 2310 100 3 16 chr12 52626104 52626413 -91656076 - AluSx SINE Alu -7 305 1 515 165 44 0 chr12 52628182 52628273 -91654216 - MER82 DNA MER2_type 0 653 559 268 95 0 0 chr12 52628270 52628312 -91654177 - Alu SINE Alu -4 304 263 * 887 213 50 15 chr12 52628306 52628508 -91653981 - MER82 DNA MER2_type -80 573 365 675 223 0 0 chr12 52628510 52628631 -91653858 - FLAM_A SINE Alu -21 121 1 1755 183 35 14 chr12 52628632 52628998 -91653491 - MER82 DNA MER2_type -278 375 2 511 228 51 13 chr12 52629110 52629268 -91653221 - L1ME4a LINE L1 -2 6119 5956 2347 81 7 3 chr12 52629293 52629591 -91652898 - AluSp SINE Alu -4 309 11 2416 102 0 0 chr12 52630172 52630477 -91652012 - AluY SINE Alu -6 305 1 2210 114 0 10 chr12 52630478 52630777 -91651712 - AluSc SINE Alu -12 297 2 1645 166 36 14 chr12 52630869 52631147 -91651342 - AluJo SINE Alu -28 284 1 228 67 0 0 chr12 52634353 52634383 -91648106 + (A)n Simple_repeat Simple_repeat 1 30 0 1753 117 18 71 chr12 52634987 52635268 -91647221 + AluSg SINE Alu 1 266 -44 1999 95 20 14 chr12 52635278 52635573 -91646916 + AluSx SINE Alu 1 297 -15 984 355 15 98 chr12 52635650 52635977 -91646512 - AluJb SINE Alu -2 300 1 1558 171 97 4 chr12 52635992 52636261 -91646228 + AluJo SINE Alu 1 294 -18 361 191 15 0 chr12 52636268 52636336 -91646153 - MER5A DNA MER1_type -80 109 41 300 338 119 45 chr12 52636353 52636775 -91645714 + L2 LINE L2 2780 3232 -40 216 268 18 0 chr12 52636939 52636995 -91645494 + CT-rich Low_complexity Low_complexity 4 60 0 3637 85 31 45 chr12 52637154 52637732 -91644757 - L1MA3 LINE L1 -9 6296 5727 2199 103 7 7 chr12 52637732 52638034 -91644455 - AluSx SINE Alu -8 304 3 314 99 0 4 chr12 52638088 52638301 -91644188 + AluY SINE Alu 1 298 -2 2415 82 0 10 chr12 52638460 52638764 -91643725 - AluY SINE Alu -10 301 1 614 120 240 0 chr12 52638797 52638897 -91643592 + FLAM_C SINE Alu 2 125 -18 245 289 58 39 chr12 52640141 52640245 -91642244 - MIR3 SINE MIR -15 193 88 202 244 128 0 chr12 52642593 52642671 -91639818 + L2 LINE L2 3201 3288 -25 623 263 129 17 chr12 52647318 52647550 -91634939 + MIR SINE MIR 1 258 -4 2012 119 13 36 chr12 52648703 52649006 -91633483 - AluJo SINE Alu -16 296 1 252 293 80 74 chr12 52649024 52649303 -91633186 + L2 LINE L2 2723 3001 -271 2424 76 3 0 chr12 52649303 52649592 -91632897 + AluSp SINE Alu 1 290 -23 252 293 80 74 chr12 52649592 52649646 -91632843 + L2 LINE L2 3001 3053 -219 454 343 107 4 chr12 52649914 52650147 -91632342 - MIR SINE MIR -3 259 3 2437 81 0 3 chr12 52651639 52651937 -91630552 - AluSc SINE Alu -12 297 1 2363 77 7 7 chr12 52654057 52654357 -91628132 + AluSc SINE Alu 1 300 -9 463 167 0 0 chr12 52654959 52655037 -91627452 - FLAM_A SINE Alu -10 132 55 2807 142 112 0 chr12 52655037 52655336 -91627153 - L1MA7 LINE L1 -332 5959 5695 2063 109 70 0 chr12 52655336 52655620 -91626869 - AluY SINE Alu -7 304 1 796 181 0 0 chr12 52655623 52655756 -91626733 - AluJo/FLAM SINE Alu -169 133 1 2807 142 112 0 chr12 52655756 52656008 -91626481 - L1MA7 LINE L1 -597 5694 5342 1617 139 4 31 chr12 52656015 52656274 -91626215 + AluJo SINE Alu 7 258 -54 2854 155 57 80 chr12 52656291 52656516 -91625973 - L1MA7 LINE L1 -899 5247 5018 2110 137 3 10 chr12 52656516 52656823 -91625666 - AluSx SINE Alu -7 305 1 2854 155 57 80 chr12 52656823 52657665 -91624824 - L1MA7 LINE L1 -1128 5018 4308 2280 108 7 0 chr12 52657857 52658152 -91624337 - AluSg SINE Alu -13 297 1 198 0 0 0 chr12 52658152 52658174 -91624315 + (T)n Simple_repeat Simple_repeat 1 22 0 181 384 38 15 chr12 52658652 52658785 -91623704 - L2 LINE L2 -493 2821 2686 2762 228 82 33 chr12 52658787 52658880 -91623609 + L1MC4a LINE L1 6732 6819 -989 1788 135 98 0 chr12 52658880 52659146 -91623343 + AluSx SINE Alu 1 292 -20 2762 228 82 33 chr12 52659146 52659931 -91622558 + L1MC4a LINE L1 6819 7653 -155 239 146 0 0 chr12 52660111 52660159 -91622330 + L1ME LINE L1 5179 5226 -920 2359 82 20 3 chr12 52660159 52660464 -91622025 - AluSq SINE Alu -3 310 1 1097 82 15 0 chr12 52660464 52660599 -91621890 - AluSq/x SINE Alu -176 137 1 206 225 0 0 chr12 52662238 52662278 -91620211 + CT-rich Low_complexity Low_complexity 4 43 0 2044 153 3 7 chr12 52662954 52663255 -91619234 + AluSx SINE Alu 1 300 -12 2544 63 0 0 chr12 52663262 52663562 -91618927 + AluY SINE Alu 1 300 -11 1472 174 78 4 chr12 52663692 52663962 -91618527 - AluJo SINE Alu -22 290 1 2150 123 10 0 chr12 52663964 52664266 -91618223 - AluSx SINE Alu -7 305 1 335 214 10 51 chr12 52664580 52664678 -91617811 + L1ME LINE L1 5691 5784 -337 345 234 145 21 chr12 52664693 52664838 -91617651 + L1MC5 LINE L1 7676 7838 -123 3309 242 43 56 chr12 52665013 52665925 -91616564 + HAL1 LINE L1 1019 1941 -566 1844 149 21 3 chr12 52665925 52666238 -91616251 + AluSx SINE Alu 1 318 0 3309 242 43 56 chr12 52666238 52666309 -91616180 + HAL1 LINE L1 1941 2011 -496 2582 78 3 0 chr12 52666309 52666617 -91615872 + AluSp SINE Alu 1 309 -4 3309 242 43 56 chr12 52666617 52666829 -91615660 + HAL1 LINE L1 2011 2202 -305 246 62 0 0 chr12 52666856 52666888 -91615601 + (TG)n Simple_repeat Simple_repeat 1 32 0 253 113 57 0 chr12 52666983 52667036 -91615453 + L1ME4a LINE L1 6065 6120 -1 6769 70 37 22 chr12 52667941 52668889 -91613600 + SVA Other Other 433 1394 0 1665 153 0 0 chr12 52668914 52669156 -91613333 + AluSq SINE Alu 1 242 -71 3277 177 9 7 chr12 52669262 52669940 -91612549 - L1 LINE L1 -792 5354 4676 440 160 0 85 chr12 52670120 52670167 -91612322 - L1MC4 LINE L1 -475 7567 7532 2137 117 0 52 chr12 52670167 52670491 -91611998 - AluSx SINE Alu 0 312 6 440 160 0 85 chr12 52670491 52670549 -91611940 - L1MC4 LINE L1 -510 7532 7471 973 199 26 16 chr12 52670567 52670758 -91611731 - AluJb SINE Alu 0 312 120 487 239 102 6 chr12 52670758 52670895 -91611594 - L1MC4 LINE L1 -572 7470 7313 1753 181 27 10 chr12 52670895 52671193 -91611296 - AluJb SINE Alu -9 303 1 487 239 102 6 chr12 52671193 52671222 -91611267 - L1MC4 LINE L1 -729 7313 7288 3459 154 76 24 chr12 52671236 52671654 -91610835 + L1MB8 LINE L1 5376 5771 -407 1839 140 3 70 chr12 52671654 52671795 -91610694 + AluJb SINE Alu 1 111 -201 2009 168 0 0 chr12 52671795 52672105 -91610384 + AluJb SINE Alu 1 310 -2 1839 140 3 70 chr12 52672105 52672278 -91610211 + AluJb SINE Alu 111 294 -18 3459 154 76 24 chr12 52672278 52672612 -91609877 + L1MB8 LINE L1 5771 6167 -11 7092 68 42 19 chr12 52672612 52674406 -91608083 + SVA Other Other 5 1394 0 2172 133 3 0 chr12 52674431 52674739 -91607750 + AluSx SINE Alu 1 309 -3 830 179 76 0 chr12 52674747 52674931 -91607558 - L1MC4 LINE L1 -740 7302 7105 21 0 0 0 chr12 52674939 52674960 -91607529 + AT_rich Low_complexity Low_complexity 1 21 0 2285 108 0 3 chr12 52675074 52675370 -91607119 - AluSx SINE Alu -17 295 1 226 171 24 0 chr12 52676561 52676602 -91605887 - MLT1G-int LTR MaLR -1326 45 4 1248 221 84 22 chr12 52676605 52676962 -91605527 - MLT1G LTR MaLR 0 590 212 205 279 0 0 chr12 52677110 52677153 -91605336 + (TG)n Simple_repeat Simple_repeat 1 43 0 1362 241 35 32 chr12 52677372 52677836 -91604653 + MLT1C LTR MaLR 1 465 -2 371 276 19 9 chr12 52678386 52678491 -91603998 + MIR3 SINE MIR 54 159 -49 2389 99 7 0 chr12 52678585 52678889 -91603600 - AluSx SINE Alu -6 306 1 329 253 71 0 chr12 52678972 52679071 -91603418 + L3 LINE CR1 1347 1452 -125 188 359 26 26 chr12 52680721 52680838 -91601651 - MIR SINE MIR -65 143 27 297 323 38 25 chr12 52681024 52681182 -91601307 + MIR SINE MIR 33 192 -70 643 254 102 41 chr12 52683207 52683451 -91599038 - L2 LINE L2 -4 3268 3010 422 248 48 24 chr12 52683595 52683720 -91598769 - MIR SINE MIR -133 129 2 2456 100 3 0 chr12 52684048 52684359 -91598130 - AluSp SINE Alu -1 312 1 336 316 127 18 chr12 52684457 52684732 -91597757 - L2 LINE L2 0 3272 2968 847 277 43 4 chr12 52685086 52685321 -91597168 + MIR SINE MIR 18 261 -1 345 287 163 0 chr12 52685570 52685699 -91596790 + MIR SINE MIR 35 184 -78 200 253 32 9 chr12 52686252 52686351 -91596138 - L2 LINE L2 0 3313 3125 287 284 23 0 chr12 52687176 52687264 -91595225 + L1ME4a LINE L1 5690 5779 -2029 324 306 45 73 chr12 52687309 52687554 -91594935 + L1ME4a LINE L1 5878 6115 -6 315 210 63 78 chr12 52687605 52687747 -91594742 - MIR SINE MIR -56 152 58 2257 89 3 7 chr12 52688082 52688373 -91594116 + AluSx SINE Alu 1 290 -22 304 239 0 15 chr12 52688477 52688544 -91593945 + MIR SINE MIR 2 67 -195 717 256 40 5 chr12 52688563 52688762 -91593727 - MIR SINE MIR -3 259 54 2371 75 0 29 chr12 52688871 52689179 -91593310 + AluY SINE Alu 1 299 -12 455 251 67 51 chr12 52689184 52689379 -91593110 - MIR SINE MIR -12 250 53 657 235 0 0 chr12 52690122 52690301 -91592188 + (TG)n Simple_repeat Simple_repeat 2 180 0 741 217 0 0 chr12 52690326 52690506 -91591983 + (TG)n Simple_repeat Simple_repeat 1 180 0 624 236 0 0 chr12 52690535 52690713 -91591776 + (TG)n Simple_repeat Simple_repeat 2 179 0 684 232 0 0 chr12 52690724 52690973 -91591516 + (TG)n Simple_repeat Simple_repeat 1 249 0 263 140 0 0 chr12 52690975 52691025 -91591464 + MER4-int LTR ERV1 1111 1160 -5438 306 239 0 44 chr12 52691030 52691189 -91591300 + (TATG)n Simple_repeat Simple_repeat 3 154 0 * 666 229 0 0 chr12 52691157 52691336 -91591153 + (TG)n Simple_repeat Simple_repeat 2 180 0 212 280 0 0 chr12 52691336 52691386 -91591103 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 609 236 0 0 chr12 52691387 52691617 -91590872 + (TG)n Simple_repeat Simple_repeat 1 230 0 257 196 0 0 chr12 52691617 52691668 -91590821 + MER4-int LTR ERV1 1112 1162 -5436 672 240 0 0 chr12 52691668 52692428 -91590061 + (TG)n Simple_repeat Simple_repeat 1 760 0 753 232 6 0 chr12 52692455 52692815 -91589674 + (TG)n Simple_repeat Simple_repeat 1 362 0 657 235 0 0 chr12 52693870 52694049 -91588440 + (TG)n Simple_repeat Simple_repeat 2 180 0 723 219 0 0 chr12 52694068 52694246 -91588243 + (TG)n Simple_repeat Simple_repeat 1 178 0 633 235 0 0 chr12 52694270 52694449 -91588040 + (TG)n Simple_repeat Simple_repeat 2 180 0 684 247 0 0 chr12 52694466 52694721 -91587768 + (TG)n Simple_repeat Simple_repeat 1 255 0 265 154 0 0 chr12 52694723 52694775 -91587714 + MER4-int LTR ERV1 1111 1162 -5436 666 248 0 0 chr12 52694815 52695123 -91587366 + (TG)n Simple_repeat Simple_repeat 1 308 0 203 273 0 0 chr12 52695125 52695169 -91587320 + (TATG)n Simple_repeat Simple_repeat 4 47 0 609 236 0 0 chr12 52695170 52695344 -91587145 + (TG)n Simple_repeat Simple_repeat 1 174 0 702 229 0 0 chr12 52695364 52695543 -91586946 + (TG)n Simple_repeat Simple_repeat 2 180 0 672 238 0 6 chr12 52695568 52696190 -91586299 + (TG)n Simple_repeat Simple_repeat 1 618 0 783 226 0 0 chr12 52696222 52696705 -91585784 + (TG)n Simple_repeat Simple_repeat 1 483 0 272 192 0 0 chr12 52696705 52696757 -91585732 + MER4-int LTR ERV1 1111 1162 -5436 659 234 0 7 chr12 52696757 52697057 -91585432 + (TG)n Simple_repeat Simple_repeat 1 298 0 193 248 50 109 chr12 52697349 52697450 -91585039 + L2 LINE L2 2607 2701 -613 1946 258 146 46 chr12 52698922 52700095 -91582394 - L2 LINE L2 0 3272 1852 2216 104 0 7 chr12 52700095 52700402 -91582087 + AluSx SINE Alu 1 305 -7 1946 258 146 46 chr12 52700402 52700697 -91581792 - L2 LINE L2 -1420 1852 1588 2224 89 0 0 chr12 52700849 52701141 -91581348 + AluY SINE Alu 1 292 -19 480 275 18 0 chr12 52701706 52701815 -91580674 + MER81 DNA DNA 4 114 0 293 273 0 0 chr12 52701837 52701903 -91580586 + MIR SINE MIR 70 135 -73 556 261 87 64 chr12 52702521 52702623 -91579866 + MIR SINE MIR 40 138 -124 2308 75 3 7 chr12 52702623 52702930 -91579559 - AluY SINE Alu -5 306 1 556 261 87 64 chr12 52702930 52703045 -91579444 + MIR SINE MIR 138 262 0 732 233 205 0 chr12 52707565 52707780 -91574709 - MIR SINE MIR -2 260 2 198 359 66 9 chr12 52707793 52707899 -91574590 + L2 LINE L2 3122 3233 -80 316 328 253 16 chr12 52708128 52709288 -91573201 + L2 LINE L2 1219 2653 -661 211 343 14 0 chr12 52709648 52709721 -91572768 + L2 LINE L2 3235 3308 -5 180 0 0 0 chr12 52709724 52709744 -91572745 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 185 344 0 0 chr12 52710067 52710128 -91572361 + L2 LINE L2 3180 3240 -73 464 244 75 41 chr12 52710171 52710388 -91572101 + MIR SINE MIR 3 230 -32 501 266 16 0 chr12 52710927 52711051 -91571438 + MIR SINE MIR 111 236 -26 198 0 0 0 chr12 52711215 52711237 -91571252 + (CAGGG)n Simple_repeat Simple_repeat 3 24 0 665 290 134 0 chr12 52712580 52712797 -91569692 + MIR SINE MIR 16 261 -1 2047 131 0 10 chr12 52714686 52715000 -91567489 - AluJb SINE Alu -1 311 1 327 311 0 10 chr12 52715194 52715297 -91567192 + MIR SINE MIR 20 121 -141 585 360 63 26 chr12 52715695 52716045 -91566444 + L2 LINE L2 2897 3259 -13 182 310 172 0 chr12 52717638 52717725 -91564764 - MIR SINE MIR -114 148 47 303 308 70 7 chr12 52717848 52717991 -91564498 - MIR SINE MIR -66 196 45 233 189 14 68 chr12 52718034 52718108 -91564381 + GA-rich Low_complexity Low_complexity 5 74 0 319 247 10 41 chr12 52718200 52718297 -91564192 - MIR3 SINE MIR -5 203 110 225 242 15 0 chr12 52720187 52720253 -91562236 + (CCCCG)n Simple_repeat Simple_repeat 4 70 0 314 252 137 0 chr12 52720978 52721109 -91561380 + MIR3 SINE MIR 40 188 -20 2341 93 3 0 chr12 52721402 52721713 -91560776 - AluSx SINE Alu 0 312 1 271 261 82 45 chr12 52721924 52722058 -91560431 + L2 LINE L2 2967 3105 -167 748 290 100 58 chr12 52722271 52722582 -91559907 + L2 LINE L2 2842 3179 -134 216 0 0 0 chr12 52722582 52722606 -91559883 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 748 290 100 58 chr12 52722606 52722742 -91559747 + L2 LINE L2 3179 3308 -5 833 145 16 0 chr12 52722857 52722981 -91559508 - FRAM SINE Alu -22 154 29 2205 96 0 0 chr12 52723025 52723318 -91559171 - AluSq SINE Alu -20 293 1 227 398 0 0 chr12 52723369 52723457 -91559032 + MIR SINE MIR 1 88 -174 293 303 0 11 chr12 52723483 52723572 -91558917 + MIR SINE MIR 174 261 -1 1778 168 13 7 chr12 52723976 52724285 -91558204 - AluJb SINE Alu -1 311 1 1837 120 0 15 chr12 52724346 52724613 -91557876 + AluSx SINE Alu 1 263 -49 2314 97 3 0 chr12 52724715 52725026 -91557463 - AluSx SINE Alu 0 312 1 343 111 0 0 chr12 52725026 52725080 -91557409 - AluSq/x SINE Alu -167 136 83 472 255 281 5 chr12 52725199 52725391 -91557098 + MIR SINE MIR 16 260 -2 374 300 154 4 chr12 52725446 52725686 -91556803 - L2 LINE L2 -788 2526 2251 285 330 0 10 chr12 52726219 52726319 -91556170 - MIR SINE MIR -60 148 50 429 288 73 34 chr12 52727477 52727654 -91554835 + MIR SINE MIR 4 187 -75 358 239 103 8 chr12 52727620 52727737 -91554752 - L2 LINE L2 0 3313 3186 * 180 373 0 0 chr12 52727733 52727808 -91554681 + MIR SINE MIR 144 218 -44 * 309 268 49 57 chr12 52727867 52727990 -91554499 - L2 LINE L2 -3 3269 3148 408 314 61 53 chr12 52728993 52729353 -91553136 - L2 LINE L2 0 3272 2910 1837 126 11 21 chr12 52729457 52729775 -91552714 - AluSx SINE Alu 0 315 1 866 279 39 12 chr12 52730110 52730364 -91552125 - MIR SINE MIR 0 262 2 2256 68 7 10 chr12 52731088 52731383 -91551106 - AluY SINE Alu -17 294 1 296 71 0 24 chr12 52731414 52731456 -91551033 + Alu SINE Alu 1 41 -261 1504 84 20 5 chr12 52731556 52731759 -91550730 + AluSg/x SINE Alu 84 289 -21 1838 155 0 19 chr12 52731799 52732109 -91550380 + AluJo SINE Alu 1 304 -8 251 225 80 65 chr12 52732133 52732271 -91550218 - L1ME4a LINE L1 -57 6064 5925 1244 178 29 4 chr12 52732680 52732958 -91549531 + MER33 DNA MER1_type 1 274 -50 360 0 0 0 chr12 52732958 52732998 -91549491 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 1155 194 0 52 chr12 52733004 52733293 -91549196 - AluJb SINE Alu -37 275 2 738 146 4 130 chr12 52733424 52733663 -91548826 - AluJb SINE Alu -101 211 3 296 353 38 30 chr12 52733974 52734107 -91548382 + L2 LINE L2 3139 3272 0 273 29 0 0 chr12 52734431 52734465 -91548024 + (CA)n Simple_repeat Simple_repeat 2 35 0 379 258 60 90 chr12 52734893 52734926 -91547563 + MIR SINE MIR 80 112 -150 1635 177 3 26 chr12 52734926 52735231 -91547258 - AluJb SINE Alu -14 298 1 379 258 60 90 chr12 52735231 52735364 -91547125 + MIR SINE MIR 112 241 -21 1150 145 0 17 chr12 52735608 52735787 -91546702 + AluJb SINE Alu 7 182 -130 24 0 0 0 chr12 52735787 52735811 -91546678 + AT_rich Low_complexity Low_complexity 1 24 0 2027 145 54 3 chr12 52737002 52737333 -91545156 + MER7A DNA MER2_type 1 346 0 1662 154 63 7 chr12 52737507 52737793 -91544696 - AluSx SINE Alu -10 302 1 328 285 0 81 chr12 52739810 52739996 -91542493 + L1ME LINE L1 5490 5660 -461 763 243 23 80 chr12 52740136 52740152 -91542337 - MER63B DNA MER1_type -813 249 234 351 0 0 0 chr12 52740152 52740191 -91542298 + (TA)n Simple_repeat Simple_repeat 1 39 0 2104 91 0 67 chr12 52740191 52740520 -91541969 - AluSc SINE Alu -2 307 1 763 243 23 80 chr12 52740520 52740654 -91541835 - MER63B DNA MER1_type -827 235 95 2196 107 3 0 chr12 52740654 52740953 -91541536 - AluSp SINE Alu -13 300 1 180 0 0 0 chr12 52740953 52740973 -91541516 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1659 117 76 8 chr12 52740973 52741237 -91541252 - AluSq SINE Alu -31 282 1 763 243 23 80 chr12 52741237 52741345 -91541144 - MER63B DNA MER1_type -964 98 2 2003 79 68 17 chr12 52741590 52741882 -91540607 - AluSc SINE Alu 0 309 3 678 195 0 0 chr12 52742117 52742230 -91540259 + FLAM_A SINE Alu 1 113 -29 198 0 0 0 chr12 52742330 52742352 -91540137 + (A)n Simple_repeat Simple_repeat 1 22 0 1213 174 91 4 chr12 52742359 52742623 -91539866 - L1MB7 LINE L1 -316 5868 5582 387 241 0 117 chr12 52742818 52742963 -91539526 + L2 LINE L2 3186 3313 0 199 299 39 13 chr12 52743012 52743089 -91539400 + L3b LINE CR1 1305 1383 -200 196 325 100 0 chr12 52743159 52743279 -91539210 - MIR SINE MIR -121 141 10 201 302 178 16 chr12 52743753 52743882 -91538607 - L2 LINE L2 -92 3180 3031 208 268 4 128 chr12 52743900 52744043 -91538446 + MIR SINE MIR 30 152 -102 228 343 73 22 chr12 52744968 52745105 -91537384 - L3 LINE CR1 -18 1559 1416 572 309 39 54 chr12 52745356 52745629 -91536860 - L2 LINE L2 0 3272 3005 660 241 127 4 chr12 52745629 52745777 -91536712 - MER112 DNA MER1_type 0 256 69 183 80 0 0 chr12 52745777 52745802 -91536687 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 660 241 127 4 chr12 52745802 52745881 -91536608 - MER112 DNA MER1_type -187 69 1 572 309 39 54 chr12 52745881 52745996 -91536493 - L2 LINE L2 -267 3005 2890 416 313 34 0 chr12 52746236 52746383 -91536106 + MIR SINE MIR 38 189 -73 571 152 0 45 chr12 52746414 52746546 -91535943 + MER53 DNA DNA 64 189 0 772 220 20 30 chr12 52747134 52747334 -91535155 + MIR SINE MIR 31 228 -34 1357 212 24 3 chr12 52747495 52747788 -91534701 + HsTC2 DNA Tc2 215 513 -1385 1102 237 46 21 chr12 52747785 52748087 -91534402 + HsTC2 DNA Tc2 1269 1757 -141 * 1622 159 48 17 chr12 52748087 52748382 -91534107 - AluJb SINE Alu -8 304 1 1102 237 46 21 chr12 52748382 52748408 -91534081 + HsTC2 DNA Tc2 1757 1781 -117 1896 126 0 23 chr12 52748419 52748721 -91533768 - AluSg SINE Alu -15 295 1 835 313 107 5 chr12 52749876 52750295 -91532194 - L2 LINE L2 0 3313 2852 260 179 54 18 chr12 52750356 52750412 -91532077 - L2 LINE L2 -2 3270 3213 1734 88 153 4 chr12 52750436 52750697 -91531792 + AluSx SINE Alu 1 300 -2 2174 108 13 3 chr12 52750697 52751002 -91531487 + AluSg SINE Alu 1 308 -2 22 0 0 0 chr12 52751783 52751805 -91530684 + AT_rich Low_complexity Low_complexity 1 22 0 2301 88 3 0 chr12 52751999 52752316 -91530173 + AluSp SINE Alu 1 318 0 1758 182 7 14 chr12 52752429 52752726 -91529763 - AluJb SINE Alu -16 296 2 251 238 0 76 chr12 52752857 52752962 -91529527 + L1MC5 LINE L1 7735 7831 -130 1954 164 7 7 chr12 52752962 52753272 -91529217 + AluSx SINE Alu 1 310 -2 1850 111 4 43 chr12 52753279 52753558 -91528931 + AluSx SINE Alu 1 268 -44 2419 83 0 3 chr12 52753677 52753967 -91528522 + AluSg SINE Alu 1 289 -21 2104 145 0 16 chr12 52754006 52754323 -91528166 + AluJo SINE Alu 1 312 0 358 240 50 0 chr12 52754350 52754450 -91528039 - L1ME4a LINE L1 -57 6064 5960 1298 175 32 45 chr12 52754903 52755168 -91527321 + MER33 DNA MER1_type 1 268 -2317 378 0 0 0 chr12 52755168 52755210 -91527279 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1810 140 0 35 chr12 52755216 52755501 -91526988 - AluJb SINE Alu -37 275 1 1298 175 32 45 chr12 52755501 52755542 -91526947 + MER33 DNA MER1_type 273 310 -14 289 353 38 30 chr12 52755786 52755919 -91526570 + L2 LINE L2 3139 3272 0 219 36 0 0 chr12 52756243 52756271 -91526218 + (CA)n Simple_repeat Simple_repeat 2 29 0 429 251 70 64 chr12 52756687 52756724 -91525765 + MIR SINE MIR 70 105 -157 1750 174 3 26 chr12 52756724 52757029 -91525460 - AluJb SINE Alu -14 298 1 429 251 70 64 chr12 52757029 52757162 -91525327 + MIR SINE MIR 105 241 -21 1260 211 83 25 chr12 52757275 52757683 -91524806 - L1MC5 LINE L1 -22 7939 7508 1070 106 0 7 chr12 52757703 52757845 -91524644 - AluJo SINE Alu -166 146 6 2231 128 0 0 chr12 52757854 52758158 -91524331 - AluSx SINE Alu -8 304 1 475 176 40 32 chr12 52758158 52758283 -91524206 - L1MC5 LINE L1 -442 7519 7394 446 152 54 45 chr12 52758307 52758419 -91524070 - L1MC5 LINE L1 -939 7022 6910 2373 96 0 3 chr12 52758429 52758730 -91523759 - AluSg SINE Alu -10 300 1 456 315 6 12 chr12 52758796 52758958 -91523531 + MIR SINE MIR 1 161 -101 * 909 246 8 29 chr12 52758947 52759187 -91523302 - MIR SINE MIR 0 262 28 1319 147 24 79 chr12 52759513 52759765 -91522724 + AluJo SINE Alu 40 277 -35 212 226 16 0 chr12 52759802 52759864 -91522625 + GA-rich Low_complexity Low_complexity 2 64 0 932 122 11 17 chr12 52759872 52760052 -91522437 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 274 131 49 0 chr12 52760057 52760118 -91522371 + GA-rich Low_complexity Low_complexity 3 66 0 592 269 75 5 chr12 52760274 52760486 -91522003 - MIR SINE MIR -2 260 34 194 335 48 30 chr12 52760548 52760715 -91521774 - L2 LINE L2 -292 2980 2811 385 256 149 37 chr12 52761601 52761970 -91520519 - L2 LINE L2 -11 3261 2832 835 151 67 17 chr12 52763018 52763197 -91519292 + MER53 DNA DNA 1 188 -1 310 264 294 6 chr12 52763709 52763872 -91518617 - MIR SINE MIR -25 237 28 800 199 0 6 chr12 52763914 52764090 -91518399 + (TG)n Simple_repeat Simple_repeat 2 176 0 447 325 52 0 chr12 52764474 52764628 -91517861 - MIR3 SINE MIR -6 202 41 345 320 115 55 chr12 52764755 52764955 -91517534 + L1MC/D LINE L1 4863 5090 -1056 640 174 33 0 chr12 52764955 52765076 -91517413 - L1PA16 LINE L1 0 6166 6042 345 320 115 55 chr12 52765076 52765187 -91517302 + L1MC/D LINE L1 5090 5193 -953 590 197 34 48 chr12 52765280 52765427 -91517062 - MIR SINE MIR -2 260 116 2131 125 17 0 chr12 52765446 52765741 -91516748 + AluSx SINE Alu 2 301 -11 1220 106 0 35 chr12 52765741 52765911 -91516578 + AluSg/x SINE Alu 134 297 -15 309 87 0 0 chr12 52765926 52765972 -91516517 - MADE1 DNA Mariner 0 80 35 521 261 0 6 chr12 52765975 52766132 -91516357 + L1MC/D LINE L1 5348 5503 -2305 243 279 0 25 chr12 52766783 52766862 -91515627 - MIR3 SINE MIR -51 157 81 2291 94 0 10 chr12 52767248 52767547 -91514942 - AluY SINE Alu -15 296 1 2228 212 90 13 chr12 52768727 52769358 -91513131 - Zaphod DNA AcHobo -55 3976 3297 545 163 7 102 chr12 52769365 52769512 -91512977 - Charlie1 DNA MER1_type -7 2754 2622 * 1126 201 26 17 chr12 52769501 52769645 -91512844 - Charlie1 DNA MER1_type -2525 236 88 1949 156 23 0 chr12 52769645 52769998 -91512491 - MER46B DNA MER2_type 0 236 1 1126 201 26 17 chr12 52769998 52770087 -91512402 - Charlie1 DNA MER1_type -2673 88 1 1982 249 121 8 chr12 52770097 52770691 -91511798 - Zaphod DNA AcHobo -3369 662 2 208 268 49 12 chr12 52770710 52770792 -91511697 - L3 LINE CR1 -1 1576 1492 547 202 15 143 chr12 52770800 52771003 -91511486 + MER69 DNA AcHobo 1 2526 0 243 289 16 0 chr12 52771040 52771114 -91511375 + MIR SINE MIR 20 95 -113 269 242 32 0 chr12 52771121 52771183 -91511306 - MIR SINE MIR 0 262 199 230 269 65 11 chr12 52771268 52771361 -91511128 + L2 LINE L2 3134 3231 -41 378 276 52 22 chr12 52771528 52771662 -91510827 + MIR SINE MIR 125 262 0 2027 151 6 3 chr12 52771768 52771957 -91510532 - AluSx SINE Alu 0 312 120 198 0 0 0 chr12 52771957 52771979 -91510510 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2027 151 6 3 chr12 52771979 52772100 -91510389 - AluSx SINE Alu -192 120 1 2331 139 55 2 chr12 52772171 52772558 -91509931 - MSTB1 LTR MaLR 0 432 29 330 148 0 0 chr12 52772593 52772647 -91509842 - MSTB1 LTR MaLR -378 54 1 4563 183 26 21 chr12 52772648 52772682 -91509807 - L1MB7 LINE L1 -21 6163 6131 2457 84 0 7 chr12 52772682 52772992 -91509497 - AluSx SINE Alu -4 308 1 4563 183 26 21 chr12 52772992 52774085 -91508404 - L1MB7 LINE L1 -53 6131 5023 864 145 0 0 chr12 52774086 52774210 -91508279 - AluJo SINE Alu -178 134 11 1217 170 48 42 chr12 52774230 52774541 -91507948 - L1MB7 LINE L1 -1108 5038 4726 818 148 0 0 chr12 52774545 52774667 -91507822 + FLAM_A SINE Alu 5 126 -7 24 0 0 0 chr12 52774667 52774691 -91507798 + AT_rich Low_complexity Low_complexity 1 24 0 357 219 0 0 chr12 52774746 52774819 -91507670 - L1MB7 LINE L1 -1405 4741 4669 235 265 71 131 chr12 52774894 52775079 -91507410 + L2 LINE L2 3021 3187 -85 2289 102 3 37 chr12 52775079 52775402 -91507087 + AluSq SINE Alu 1 312 -1 235 265 71 131 chr12 52775402 52775484 -91507005 + L2 LINE L2 3187 3272 0 278 242 44 143 chr12 52775977 52776270 -91506219 - L2 LINE L2 -77 3195 2932 1041 234 57 8 chr12 52776828 52777093 -91505396 - L1ME3A LINE L1 0 6170 5893 297 287 90 24 chr12 52777249 52777416 -91505073 + MIR3 SINE MIR 3 180 -28 1823 115 0 0 chr12 52777492 52777726 -91504763 + AluSg SINE Alu 1 234 -76 234 91 0 0 chr12 52777731 52777764 -91504725 + (A)n Simple_repeat Simple_repeat 1 33 0 2437 97 0 0 chr12 52778657 52778956 -91503533 + AluSx SINE Alu 1 299 -13 513 56 0 0 chr12 52779569 52779641 -91502848 + AluSg/q SINE Alu 234 305 -8 1229 171 91 4 chr12 52779648 52779912 -91502577 - L1ME3A LINE L1 -316 5868 5582 347 239 0 127 chr12 52780117 52780251 -91502238 + L2 LINE L2 3197 3313 0 194 299 39 13 chr12 52780300 52780377 -91502112 + L3b LINE CR1 1305 1383 -200 182 325 100 0 chr12 52780447 52780567 -91501922 - MIR SINE MIR -121 141 10 188 302 178 16 chr12 52781041 52781170 -91501319 - L2 LINE L2 -92 3180 3031 207 282 4 128 chr12 52781188 52781331 -91501158 + MIR SINE MIR 30 152 -102 217 343 73 22 chr12 52782256 52782393 -91500096 - L3 LINE CR1 -18 1559 1416 531 309 39 54 chr12 52782644 52782917 -91499572 - L2 LINE L2 0 3272 3005 551 241 127 4 chr12 52782917 52783065 -91499424 - MER112 DNA MER1_type 0 256 69 183 80 0 0 chr12 52783065 52783090 -91499399 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 551 241 127 4 chr12 52783090 52783169 -91499320 - MER112 DNA MER1_type -187 69 1 531 309 39 54 chr12 52783169 52783284 -91499205 - L2 LINE L2 -267 3005 2890 435 301 35 0 chr12 52783524 52783667 -91498822 + MIR SINE MIR 38 185 -77 581 152 0 45 chr12 52783702 52783834 -91498655 + MER53 DNA DNA 64 189 0 774 220 20 30 chr12 52784422 52784622 -91497867 + MIR SINE MIR 31 228 -34 1352 212 24 3 chr12 52784783 52785076 -91497413 + HsTC2 DNA Tc2 215 513 -1385 1140 227 43 23 chr12 52785073 52785373 -91497116 + HsTC2 DNA Tc2 1269 1750 -148 * 1744 157 48 17 chr12 52785377 52785670 -91496819 - AluJb SINE Alu -10 302 1 541 92 0 110 chr12 52785672 52785707 -91496782 - L1MB3 LINE L1 -15 6168 6131 2463 74 7 0 chr12 52785707 52786003 -91496486 - AluSp SINE Alu -15 298 1 541 92 0 110 chr12 52786003 52786076 -91496413 - L1MB3 LINE L1 -52 6131 6072 269 303 123 19 chr12 52786315 52786477 -91496012 + MIR3 SINE MIR 29 207 -1 1858 108 24 16 chr12 52786895 52787146 -91495343 + AluSg SINE Alu 1 253 -57 261 276 11 23 chr12 52787367 52787454 -91495035 - L2 LINE L2 -35 3278 3193 180 200 0 0 chr12 52787475 52787515 -91494974 + CT-rich Low_complexity Low_complexity 3 42 0 334 269 43 11 chr12 52787582 52787675 -91494814 - MIR SINE MIR -55 207 112 301 213 27 0 chr12 52787712 52787787 -91494702 + MIR SINE MIR 45 121 -87 492 265 86 0 chr12 52788326 52788477 -91494012 - MIR SINE MIR 0 262 99 211 232 0 18 chr12 52789736 52789792 -91492697 + (CAGAGA)n Simple_repeat Simple_repeat 2 56 0 1754 150 75 0 chr12 52790581 52790861 -91491628 - AluSx SINE Alu -11 301 1 209 316 127 0 chr12 52790944 52791023 -91491466 + L3b LINE CR1 1301 1389 -194 197 283 144 21 chr12 52791366 52791557 -91490932 - MIR SINE MIR -71 191 16 361 296 52 0 chr12 52793333 52793468 -91489021 + MIR SINE MIR 119 260 -2 * 720 265 139 0 chr12 52793459 52793674 -91488815 - MIR SINE MIR -2 260 16 260 255 181 11 chr12 52795361 52795455 -91487034 - MIR3 SINE MIR -84 124 15 393 293 70 38 chr12 52796670 52796827 -91485662 - MIR SINE MIR -88 174 13 204 343 22 44 chr12 52797189 52797326 -91485163 + L2 LINE L2 3168 3301 -12 206 218 244 13 chr12 52797793 52797871 -91484618 + MIR SINE MIR 43 138 -70 255 93 23 0 chr12 52798632 52798675 -91483814 - MIR SINE MIR -14 248 205 249 289 47 27 chr12 52798955 52799104 -91483385 + (CAGAGA)n Simple_repeat Simple_repeat 2 153 0 * 398 272 5 49 chr12 52799065 52799308 -91483181 + GA-rich Low_complexity Low_complexity 1 232 0 29 0 0 0 chr12 52799752 52799781 -91482708 + GC_rich Low_complexity Low_complexity 1 29 0 32 57 0 0 chr12 52800109 52800162 -91482327 + GC_rich Low_complexity Low_complexity 1 53 0 204 106 64 0 chr12 52800247 52800294 -91482195 + (CCCG)n Simple_repeat Simple_repeat 2 51 0 232 227 18 27 chr12 52800362 52800472 -91482017 + (CCG)n Simple_repeat Simple_repeat 2 110 0 465 244 13 18 chr12 52804734 52804885 -91477604 + MIR SINE MIR 46 192 -62 322 278 42 78 chr12 52805013 52805204 -91477285 + MIR SINE MIR 77 260 -2 222 258 32 0 chr12 52806787 52806849 -91475640 + CT-rich Low_complexity Low_complexity 1 64 0 248 262 117 29 chr12 52807290 52807393 -91475096 - MIR SINE MIR -63 199 88 460 291 69 57 chr12 52808018 52808424 -91474065 - L2 LINE L2 -544 2770 2360 254 346 21 38 chr12 52809077 52809314 -91473175 - L2 LINE L2 -1953 1361 1129 446 280 134 62 chr12 52809643 52810032 -91472457 - L2 LINE L2 0 3272 2856 357 297 199 12 chr12 52810066 52810487 -91472002 - L2 LINE L2 -550 2764 2265 261 271 12 12 chr12 52810733 52810818 -91471671 + G-rich Low_complexity Low_complexity 4 88 0 2325 98 0 3 chr12 52814695 52814990 -91467499 - AluSx SINE Alu -18 294 1 212 305 121 21 chr12 52815453 52815594 -91466895 + MIR SINE MIR 108 262 0 227 175 35 18 chr12 52815640 52815697 -91466792 + GA-rich Low_complexity Low_complexity 1 58 0 2478 81 3 3 chr12 52815918 52816227 -91466262 + AluSc SINE Alu 1 309 0 1287 190 0 5 chr12 52816237 52816458 -91466031 + AluJo SINE Alu 1 220 -92 234 151 19 57 chr12 52816458 52816511 -91465978 + AluSc SINE Alu 84 134 -165 212 240 0 0 chr12 52817072 52817122 -91465367 + L2 LINE L2 3262 3311 -2 194 259 140 28 chr12 52817351 52817556 -91464933 + L3b LINE CR1 1217 1487 -96 550 286 93 0 chr12 52818225 52818440 -91464049 + MIR SINE MIR 25 262 0 2217 98 0 0 chr12 52818693 52818970 -91463519 + AluSx SINE Alu 18 294 -18 203 237 0 0 chr12 52819421 52819459 -91463030 + polypurine Low_complexity Low_complexity 4 41 0 4005 82 94 28 chr12 52819854 52820007 -91462482 + PABL_A LTR ERV1 1 142 -518 2192 91 31 3 chr12 52820007 52820294 -91462195 + AluY SINE Alu 2 296 -15 4005 82 94 28 chr12 52820294 52820759 -91461730 + PABL_A LTR ERV1 142 660 0 379 220 73 27 chr12 52821585 52821735 -91460754 - MER104 DNA Tc2 -19 161 5 2390 104 3 0 chr12 52821740 52822048 -91460441 - AluSp SINE Alu -4 309 1 210 118 0 0 chr12 52824826 52824860 -91457629 + (TATG)n Simple_repeat Simple_repeat 2 35 0 2615 55 38 11 chr12 52824860 52825220 -91457269 - THE1C LTR MaLR -5 370 1 1270 146 0 16 chr12 52825361 52825546 -91456943 + AluJb SINE Alu 1 182 -130 24 0 0 0 chr12 52825546 52825570 -91456919 + AT_rich Low_complexity Low_complexity 1 24 0 1866 145 54 3 chr12 52826762 52827093 -91455396 + MER7A DNA MER2_type 1 346 0 1780 154 63 7 chr12 52827267 52827553 -91454936 - AluSx SINE Alu -10 302 1 291 301 134 56 chr12 52829570 52829839 -91452650 + L1ME LINE L1 5490 5779 -342 207 0 0 0 chr12 52829912 52829935 -91452554 + (TA)n Simple_repeat Simple_repeat 2 24 0 2271 110 0 16 chr12 52829935 52830245 -91452244 - AluSc SINE Alu -4 305 1 874 304 112 7 chr12 52831400 52831818 -91450671 - L2 LINE L2 0 3313 2852 260 179 54 18 chr12 52831879 52831935 -91450554 - L2 LINE L2 -2 3270 3213 1659 88 154 0 chr12 52831959 52832219 -91450270 + AluSx SINE Alu 1 300 -2 2174 108 13 3 chr12 52832219 52832524 -91449965 + AluSg SINE Alu 1 308 -2 22 0 0 0 chr12 52833305 52833327 -91449162 + AT_rich Low_complexity Low_complexity 1 22 0 2301 88 3 0 chr12 52833521 52833838 -91448651 + AluSp SINE Alu 1 318 0 1758 182 7 14 chr12 52833951 52834248 -91448241 - AluJb SINE Alu -16 296 2 251 238 0 76 chr12 52834379 52834484 -91448005 + L1MC5 LINE L1 7735 7831 -130 320 267 69 0 chr12 52834597 52834698 -91447791 - L3 LINE CR1 -125 1452 1345 443 228 104 0 chr12 52834783 52834976 -91447513 + AluSx SINE Alu 6 218 -94 718 316 14 3 chr12 52835901 52836198 -91446291 - AluSq SINE Alu -11 302 3 2199 124 6 13 chr12 52836765 52837079 -91445410 - AluSx SINE Alu 0 312 1 2330 105 3 10 chr12 52837107 52837421 -91445068 + AluSp SINE Alu 1 312 -1 2198 113 17 0 chr12 52837511 52837813 -91444676 + AluSx SINE Alu 1 307 -5 950 125 0 0 chr12 52837902 52838030 -91444459 + FLAM_C SINE Alu 3 130 -13 208 78 0 78 chr12 52838068 52838119 -91444370 + (TAAAAA)n Simple_repeat Simple_repeat 3 49 0 2373 78 3 3 chr12 52838130 52838425 -91444064 + AluY SINE Alu 1 295 -16 2065 123 0 74 chr12 52838428 52838563 -91443926 + AluSx SINE Alu 1 144 -168 2301 107 7 7 chr12 52838563 52838873 -91443616 + AluSq SINE Alu 2 311 -2 2065 123 0 74 chr12 52838873 52839062 -91443427 + AluSx SINE Alu 144 301 -11 2523 77 3 3 chr12 52839066 52839376 -91443113 + AluSp SINE Alu 1 310 -3 1168 165 50 90 chr12 52840721 52841000 -91441489 - AluJo SINE Alu -38 274 7 2127 90 8 0 chr12 52841059 52841327 -91441162 + AluSq SINE Alu 15 284 -29 244 143 0 79 chr12 52841351 52841414 -91441075 - L1MA8 LINE L1 -22 6269 6212 2075 135 3 3 chr12 52841414 52841710 -91440779 - AluSx SINE Alu -9 303 8 1133 131 34 11 chr12 52841756 52841931 -91440558 - AluJo SINE Alu -12 300 122 414 106 0 0 chr12 52841931 52841997 -91440492 - MER41B LTR ERV1 -88 547 482 800 173 0 14 chr12 52841997 52842136 -91440353 - AluJo SINE Alu -175 137 1 2521 81 0 0 chr12 52842202 52842511 -91439978 - AluY SINE Alu -2 309 1 24 0 0 0 chr12 52842514 52842538 -91439951 + AT_rich Low_complexity Low_complexity 1 24 0 1187 106 0 12 chr12 52842538 52842698 -91439791 - AluSg/x SINE Alu -19 293 136 284 0 28 0 chr12 52842700 52842736 -91439753 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2105 107 3 21 chr12 52842736 52842888 -91439601 - AluSx SINE Alu -28 284 138 2465 63 3 7 chr12 52842888 52843187 -91439302 - AluSc SINE Alu -11 298 1 2105 107 3 21 chr12 52843187 52843323 -91439166 - AluSx SINE Alu -174 138 1 2115 132 0 10 chr12 52843332 52843636 -91438853 - AluSx SINE Alu -11 301 1 243 0 0 0 chr12 52844269 52844296 -91438193 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2276 92 0 0 chr12 52844296 52844577 -91437912 - AluSg SINE Alu -29 281 1 185 255 0 0 chr12 52844865 52844912 -91437577 + MIR SINE MIR 161 207 -55 1305 199 60 25 chr12 52845145 52845427 -91437062 + AluJo SINE Alu 1 292 -20 1268 131 90 8 chr12 52845472 52845739 -91436750 - L1MA8 LINE L1 -14 6277 5989 293 171 14 57 chr12 52845931 52846001 -91436488 - MER112 DNA MER1_type -193 67 1 3496 111 26 31 chr12 52847462 52847946 -91434543 - L1PB4 LINE L1 -7 6149 5667 2607 47 0 0 chr12 52847946 52848243 -91434246 - AluY SINE Alu -14 297 1 3496 111 26 31 chr12 52848243 52848362 -91434127 - L1PB4 LINE L1 -489 5667 5549 2190 136 3 0 chr12 52848362 52848671 -91433818 - AluSx SINE Alu -2 310 1 329 328 39 0 chr12 52848805 52848933 -91433556 + L1ME LINE L1 5527 5659 -462 825 249 160 15 chr12 52848973 52849310 -91433179 - L2 LINE L2 0 3313 2928 2320 112 3 6 chr12 52849508 52849822 -91432667 - AluSp SINE Alu 0 313 1 250 311 201 43 chr12 52851519 52851639 -91430850 + MIR SINE MIR 21 121 -141 2127 121 0 20 chr12 52851639 52851936 -91430553 + AluSx SINE Alu 1 291 -21 250 311 201 43 chr12 52851936 52852024 -91430465 + MIR SINE MIR 121 262 0 224 298 92 71 chr12 52852250 52852391 -91430098 - MIR SINE MIR -72 190 47 279 0 0 0 chr12 52852396 52852427 -91430062 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 679 162 27 9 chr12 52852429 52852540 -91429949 - FLAM_A SINE Alu -17 116 4 827 154 0 0 chr12 52853154 52853284 -91429205 + AluSg/x SINE Alu 174 303 -9 2243 126 0 3 chr12 52853946 52854248 -91428241 - AluSx SINE Alu -11 301 1 2323 99 3 3 chr12 52855711 52856023 -91426466 - AluSx SINE Alu 0 312 1 797 176 6 77 chr12 52856247 52856286 -91426203 - AluJo SINE Alu -152 160 120 2597 47 0 19 chr12 52856286 52856603 -91425886 - AluY SINE Alu 0 311 1 797 176 6 77 chr12 52856603 52856733 -91425756 - AluJo SINE Alu -192 120 3 1428 192 50 0 chr12 52856816 52856943 -91425546 + AluJo SINE Alu 1 120 -192 1391 153 25 120 chr12 52856943 52857063 -91425426 + AluJb SINE Alu 1 131 -181 2186 119 0 0 chr12 52857063 52857348 -91425141 - AluSx SINE Alu -13 299 15 1391 153 25 120 chr12 52857348 52857553 -91424936 + AluJb SINE Alu 131 295 -17 1428 192 50 0 chr12 52857553 52857686 -91424803 + AluJo SINE Alu 120 274 -38 185 352 86 62 chr12 52858459 52858715 -91423774 - L2 LINE L2 -579 2735 2474 2517 77 3 3 chr12 52859031 52859341 -91423148 - AluSp SINE Alu -3 310 1 2069 123 0 71 chr12 52859345 52859533 -91422956 - AluSx SINE Alu -11 301 144 2296 107 7 7 chr12 52859533 52859843 -91422646 - AluSq SINE Alu -2 311 2 2069 123 0 71 chr12 52859843 52859978 -91422511 - AluSx SINE Alu -168 144 1 1218 116 0 63 chr12 52859981 52860143 -91422346 - AluJo SINE Alu -16 296 146 2552 69 3 0 chr12 52860143 52860449 -91422040 - AluY SINE Alu -4 307 1 1218 116 0 63 chr12 52860449 52860475 -91422014 - AluJo SINE Alu -166 146 120 26 30 0 0 chr12 52860478 52860511 -91421978 + AT_rich Low_complexity Low_complexity 1 33 0 962 125 0 0 chr12 52860548 52860676 -91421813 - AluJo SINE Alu -182 130 3 2197 112 16 0 chr12 52860765 52861068 -91421421 - AluSx SINE Alu -4 308 1 2297 99 10 10 chr12 52861158 52861470 -91421019 - AluSp SINE Alu -1 312 1 2443 76 0 13 chr12 52861470 52861774 -91420715 - AluSp SINE Alu -13 300 1 813 230 26 5 chr12 52861774 52861957 -91420532 - MIR SINE MIR -1 261 75 225 263 34 69 chr12 52861957 52862016 -91420473 + MIR SINE MIR 3 63 -177 2486 81 0 3 chr12 52862016 52862324 -91420165 + AluSx SINE Alu 1 307 -5 225 263 34 69 chr12 52862324 52862432 -91420057 + MIR SINE MIR 63 158 -82 2013 148 7 0 chr12 52862513 52862810 -91419679 + AluJo SINE Alu 1 299 -13 2157 99 0 40 chr12 52863754 52863914 -91418575 - AluSx SINE Alu -21 291 147 2506 65 0 0 chr12 52863914 52864208 -91418281 - AluY SINE Alu -17 294 1 2157 99 0 40 chr12 52864208 52864350 -91418139 - AluSx SINE Alu -165 147 1 740 167 8 23 chr12 52864382 52864514 -91417975 + AluJb SINE Alu 2 131 -181 2253 114 7 0 chr12 52864663 52864960 -91417529 + AluSq SINE Alu 1 299 -14 2432 84 10 0 chr12 52865679 52865987 -91416502 + AluSq SINE Alu 1 311 -2 2476 64 0 10 chr12 52866644 52866941 -91415548 + AluY SINE Alu 9 302 -9 189 0 0 0 chr12 52868962 52868983 -91413506 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 225 0 0 0 chr12 52872063 52872088 -91410401 + (A)n Simple_repeat Simple_repeat 1 25 0 2340 112 0 0 chr12 52872096 52872392 -91410097 - AluSq SINE Alu -17 296 1 2075 144 7 0 chr12 52872395 52872686 -91409803 - AluSx SINE Alu -19 293 1 1856 112 127 0 chr12 52872888 52873156 -91409333 + AluSx SINE Alu 1 302 0 21 0 0 0 chr12 52873284 52873305 -91409184 + AT_rich Low_complexity Low_complexity 1 21 0 298 275 69 38 chr12 52873407 52873538 -91408951 + L2 LINE L2 3179 3313 0 225 245 57 0 chr12 52873952 52874005 -91408484 + L2 LINE L2 3201 3256 -16 1071 169 5 29 chr12 52874200 52874407 -91408082 - AluSp SINE Alu -2 311 110 693 158 16 24 chr12 52874601 52874728 -91407761 - AluJb SINE Alu -185 127 2 225 242 42 63 chr12 52874810 52874905 -91407584 - MIR SINE MIR -104 158 66 2481 84 0 3 chr12 52874918 52875226 -91407263 - AluSx SINE Alu -5 307 1 281 39 0 96 chr12 52875764 52875788 -91406701 + (A)n Simple_repeat Simple_repeat 1 19 -28 784 237 81 32 chr12 52875788 52876071 -91406418 + AluSc SINE Alu 3 299 0 281 39 0 96 chr12 52876071 52876098 -91406391 + (A)n Simple_repeat Simple_repeat 19 47 0 24 0 0 0 chr12 52876168 52876192 -91406297 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 52876217 52876239 -91406250 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 52876541 52876567 -91405922 + AT_rich Low_complexity Low_complexity 1 26 0 463 101 58 14 chr12 52876869 52876938 -91405551 - AluS SINE Alu -239 73 2 184 222 93 120 chr12 52876977 52877059 -91405430 + L2 LINE L2 2702 2782 -532 2495 82 0 7 chr12 52877059 52877365 -91405124 + AluSx SINE Alu 2 305 -7 184 222 93 120 chr12 52877365 52877390 -91405099 + L2 LINE L2 2782 2806 -508 550 261 60 60 chr12 52877669 52877765 -91404724 + MIR SINE MIR 59 160 -102 1937 99 4 4 chr12 52877765 52878041 -91404448 + AluSg SINE Alu 34 309 0 550 261 60 60 chr12 52878041 52878125 -91404364 + MIR SINE MIR 159 242 -20 191 320 0 20 chr12 52878129 52878179 -91404310 + L2 LINE L2 3134 3182 -90 264 30 0 0 chr12 52878399 52878432 -91404057 + (TG)n Simple_repeat Simple_repeat 1 33 0 266 273 52 0 chr12 52878552 52878629 -91403860 + MIR SINE MIR 33 113 -149 2351 105 0 0 chr12 52879419 52879725 -91402764 - AluSx SINE Alu -2 310 5 686 251 91 12 chr12 52879850 52880093 -91402396 + MIR SINE MIR 1 262 0 3710 107 77 20 chr12 52880119 52880718 -91401771 + LTR10E LTR ERV1 1 633 0 2364 99 3 10 chr12 52881099 52881413 -91401076 + AluSp SINE Alu 2 313 0 2326 123 0 0 chr12 52881424 52881734 -91400755 + AluSx SINE Alu 1 310 -2 875 226 16 0 chr12 52881812 52881998 -91400491 - MER5A DNA MER1_type 0 189 1 225 237 79 66 chr12 52882106 52882182 -91400307 + MER5B DNA MER1_type 92 168 -10 265 280 91 21 chr12 52882447 52882590 -91399899 + MIR SINE MIR 39 191 -71 2011 96 4 0 chr12 52882600 52882850 -91399639 + AluSp SINE Alu 1 251 -62 504 103 230 0 chr12 52882850 52882948 -91399541 + AluSg/x SINE Alu 182 304 0 2423 91 0 3 chr12 52882988 52883295 -91399194 - AluSg SINE Alu -4 306 1 257 309 117 0 chr12 52883597 52883691 -91398798 + MIR SINE MIR 47 151 -111 34 0 0 0 chr12 52883979 52884013 -91398476 + AT_rich Low_complexity Low_complexity 1 34 0 643 179 77 0 chr12 52884018 52884135 -91398354 + AluJo/FLAM SINE Alu 1 126 -176 1912 127 10 13 chr12 52884135 52884435 -91398054 - AluSx SINE Alu -13 299 1 372 88 0 0 chr12 52885449 52885506 -91396983 + (CA)n Simple_repeat Simple_repeat 2 58 0 351 301 24 41 chr12 52886708 52886831 -91395658 + MIR3 SINE MIR 4 124 -84 435 265 18 42 chr12 52886831 52887018 -91395471 + MIR SINE MIR 3 187 -61 186 250 104 94 chr12 52887508 52887604 -91394885 - MIR SINE MIR -10 252 156 2273 93 0 17 chr12 52888128 52888430 -91394059 - AluSx SINE Alu -4 308 12 324 312 7 14 chr12 52888630 52888749 -91393740 + (ATGGTG)n Simple_repeat Simple_repeat 4 123 -20 1974 227 76 55 chr12 52888749 52889330 -91393159 - MLT1E LTR MaLR 0 593 1 324 312 7 14 chr12 52889330 52889351 -91393138 + (ATGGTG)n Simple_repeat Simple_repeat 123 143 0 2242 126 0 19 chr12 52890027 52890344 -91392145 - AluSx SINE Alu -1 311 1 2242 118 0 6 chr12 52890382 52890697 -91391792 - AluSq SINE Alu 0 313 1 434 224 109 120 chr12 52890871 52891019 -91391470 + MIR3 SINE MIR 4 151 -57 2556 66 0 0 chr12 52891019 52891320 -91391169 - AluY SINE Alu -10 301 1 434 224 109 120 chr12 52891320 52891354 -91391135 + MIR3 SINE MIR 151 184 -24 756 125 0 0 chr12 52891360 52891464 -91391025 + FLAM_A SINE Alu 15 118 -24 2245 125 0 3 chr12 52891536 52891841 -91390648 - AluSx SINE Alu -8 304 1 2049 177 0 0 chr12 52891880 52892190 -91390299 + AluJb SINE Alu 1 310 -2 1342 186 0 17 chr12 52893731 52893788 -91388701 + AluJo SINE Alu 80 136 -176 2384 90 0 0 chr12 52893788 52894087 -91388402 + AluSg SINE Alu 1 299 -11 1342 186 0 17 chr12 52894087 52894266 -91388223 + AluJo SINE Alu 136 312 0 509 207 136 0 chr12 52894547 52894687 -91387802 + MIR SINE MIR 100 258 -4 310 343 55 87 chr12 52894806 52895244 -91387245 + L2 LINE L2 2825 3248 -24 189 0 0 0 chr12 52895510 52895531 -91386958 + (T)n Simple_repeat Simple_repeat 1 21 0 199 244 0 0 chr12 52895531 52895572 -91386917 - L2 LINE L2 -30 3283 3243 25 65 0 0 chr12 52896049 52896095 -91386394 + GC_rich Low_complexity Low_complexity 1 46 0 252 284 14 0 chr12 52896921 52896995 -91385494 + CT-rich Low_complexity Low_complexity 5 79 0 1827 127 44 7 chr12 52897065 52897340 -91385149 - AluSx SINE Alu -27 285 1 292 286 16 39 chr12 52897776 52897958 -91384531 + GA-rich Low_complexity Low_complexity 1 178 0 358 240 60 30 chr12 52898549 52898649 -91383840 - MIR SINE MIR -132 130 28 233 368 80 8 chr12 52899063 52899188 -91383301 + L2 LINE L2 3128 3261 -11 321 210 0 0 chr12 52899254 52899316 -91383173 + L3b LINE CR1 1338 1399 -184 2148 95 34 7 chr12 52899413 52899707 -91382782 + AluSx SINE Alu 3 304 -8 2015 81 0 4 chr12 52899707 52899954 -91382535 + AluY SINE Alu 1 246 -65 517 97 0 169 chr12 52899954 52900003 -91382486 - MER5B DNA MER1_type -75 103 47 2208 96 31 0 chr12 52900003 52900294 -91382195 - AluSx SINE Alu -12 300 1 2342 101 3 0 chr12 52900304 52900611 -91381878 - AluSq SINE Alu -5 308 1 517 97 0 169 chr12 52900611 52900674 -91381815 - MER5B DNA MER1_type -141 37 1 702 253 91 3 chr12 52900738 52900949 -91381540 - MIR SINE MIR 0 262 37 210 143 0 0 chr12 52902374 52902409 -91380080 + (TG)n Simple_repeat Simple_repeat 1 35 0 223 216 20 0 chr12 52902502 52902553 -91379936 + (CA)n Simple_repeat Simple_repeat 1 52 0 219 260 60 0 chr12 52902819 52902919 -91379570 + (CCGGG)n Simple_repeat Simple_repeat 1 106 0 27 49 0 0 chr12 52902936 52902977 -91379512 + GC_rich Low_complexity Low_complexity 1 41 0 355 244 189 24 chr12 52905485 52905612 -91376877 + MER5A DNA MER1_type 42 189 0 394 259 61 30 chr12 52906045 52906176 -91376313 - MIR SINE MIR -79 183 49 563 333 54 0 chr12 52911334 52911502 -91370987 - MIR SINE MIR -66 196 20 1077 342 50 52 chr12 52911642 52912559 -91369930 + L2 LINE L2 1080 1996 -1318 2158 84 3 32 chr12 52912559 52912868 -91369621 - AluSp SINE Alu -11 302 3 1077 342 50 52 chr12 52912868 52913035 -91369454 + L2 LINE L2 1996 2162 -1152 1675 217 23 39 chr12 52913117 52913600 -91368889 - L1ME3 LINE L1 -109 6053 5579 947 325 142 19 chr12 52913600 52914278 -91368211 + L2 LINE L2 2136 2896 -418 204 216 0 0 chr12 52914336 52914373 -91368116 + (CA)n Simple_repeat Simple_repeat 1 37 0 1956 145 0 0 chr12 52914392 52914745 -91367744 - AluSx SINE Alu 0 353 1 343 354 83 22 chr12 52914754 52914983 -91367506 + L2 LINE L2 3005 3247 -66 320 343 72 39 chr12 52915004 52915185 -91367304 + MIR SINE MIR 20 206 -56 282 175 0 0 chr12 52915507 52915587 -91366902 + (TG)n Simple_repeat Simple_repeat 2 81 0 306 236 64 27 chr12 52916220 52916330 -91366159 - L2 LINE L2 -192 3080 2967 2262 70 0 51 chr12 52916418 52916733 -91365756 - AluY SINE Alu -12 299 1 1189 118 0 0 chr12 52916802 52916963 -91365526 - AluSg/x SINE Alu -17 295 135 231 255 0 0 chr12 52918852 52918899 -91363590 + GA-rich Low_complexity Low_complexity 1 47 0 276 30 0 0 chr12 52919466 52919499 -91362990 + (CTGGGG)n Simple_repeat Simple_repeat 4 36 0 423 0 0 0 chr12 52920012 52920059 -91362430 + (TG)n Simple_repeat Simple_repeat 2 48 0 2310 95 0 0 chr12 52921336 52921630 -91360859 + AluSx SINE Alu 1 294 -18 530 246 76 0 chr12 52921777 52921948 -91360541 - LTR33 LTR ERVL 0 521 338 308 263 117 50 chr12 52921977 52922156 -91360333 - LTR33A LTR ERVL -271 252 62 1704 173 7 10 chr12 52924281 52924588 -91357901 + AluJb SINE Alu 1 306 -6 479 244 82 7 chr12 52925480 52925644 -91356845 - MIR SINE MIR -56 206 27 768 140 0 9 chr12 52929082 52929196 -91353293 + AluJb SINE Alu 6 118 -194 2485 37 3 3 chr12 52929196 52929494 -91352995 - AluY SINE Alu -13 298 1 29 0 0 0 chr12 52929503 52929532 -91352957 + AT_rich Low_complexity Low_complexity 1 29 0 1824 168 7 7 chr12 52929536 52929846 -91352643 + AluSx SINE Alu 1 310 -2 358 306 36 15 chr12 52929921 52930066 -91352423 + MIR SINE MIR 17 165 -65 217 205 0 0 chr12 52930183 52930222 -91352267 + (CTGGGG)n Simple_repeat Simple_repeat 1 39 0 24 85 0 0 chr12 52930414 52930473 -91352016 + GC_rich Low_complexity Low_complexity 1 59 0 203 214 43 43 chr12 52930704 52930774 -91351715 + G-rich Low_complexity Low_complexity 3 72 0 204 40 0 0 chr12 52931631 52931656 -91350833 + (TGG)n Simple_repeat Simple_repeat 1 25 0 906 263 45 4 chr12 52934512 52934759 -91347730 + MIR SINE MIR 2 258 -4 1683 222 29 62 chr12 52935764 52935968 -91346521 - MER63B DNA MER1_type -626 436 227 2304 67 0 55 chr12 52935968 52936295 -91346194 - AluY SINE Alu -2 309 1 1683 222 29 62 chr12 52936295 52936429 -91346060 - MER63B DNA MER1_type -835 227 90 2222 107 3 0 chr12 52936429 52936728 -91345761 - AluSp SINE Alu -13 300 1 180 0 0 0 chr12 52936728 52936748 -91345741 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1974 113 3 7 chr12 52936748 52937031 -91345458 - AluSq SINE Alu -31 282 1 1683 222 29 62 chr12 52937031 52937139 -91345350 - MER63B DNA MER1_type -969 93 2 2037 82 68 17 chr12 52937362 52937673 -91344816 - AluSc SINE Alu 0 328 3 797 196 0 0 chr12 52937909 52938042 -91344447 + FLAM_A SINE Alu 1 133 0 2206 109 0 0 chr12 52938049 52938343 -91344146 + AluSg SINE Alu 1 294 -16 1516 177 92 11 chr12 52938346 52938617 -91343872 - AluSx SINE Alu -9 293 1 1648 158 20 14 chr12 52938633 52938925 -91343564 - AluJo SINE Alu -8 304 11 1629 124 117 0 chr12 52938938 52939204 -91343285 - AluSx SINE Alu -15 297 1 513 251 62 34 chr12 52939326 52939505 -91342984 - L1ME1 LINE L1 -2 6332 5991 213 218 91 0 chr12 52939803 52939858 -91342631 - L2 LINE L2 -5 3308 3249 440 273 48 48 chr12 52939882 52939951 -91342538 + MIR SINE MIR 86 154 -108 2218 97 10 0 chr12 52939951 52940251 -91342238 - AluSx SINE Alu -9 303 1 440 273 48 48 chr12 52940251 52940346 -91342143 + MIR SINE MIR 153 250 -12 2361 93 0 0 chr12 52940479 52940780 -91341709 - AluSx SINE Alu -11 301 1 850 337 104 38 chr12 52940817 52941647 -91340842 - L2 LINE L2 -264 3008 2128 259 291 77 34 chr12 52942294 52942411 -91340078 - L2 LINE L2 -11 3302 3181 2310 85 0 3 chr12 52942422 52942717 -91339772 + AluSx SINE Alu 1 294 -18 2328 82 3 3 chr12 52942763 52943068 -91339421 + AluSx SINE Alu 1 305 -7 1864 166 119 35 chr12 52943368 52943797 -91338692 - MLT1C LTR MaLR 0 467 3 372 297 81 9 chr12 52945880 52945991 -91336498 - L2 LINE L2 -1 3271 3153 2440 53 7 3 chr12 52946317 52946617 -91335872 - AluY SINE Alu -10 301 1 912 125 0 0 chr12 52946667 52946803 -91335686 - AluSp/q SINE Alu -12 301 166 772 141 16 8 chr12 52951785 52951906 -91330583 + FLAM_A SINE Alu 5 126 -7 379 245 50 50 chr12 52953889 52954008 -91328481 - MIR SINE MIR -49 213 92 2327 95 0 0 chr12 52954008 52954312 -91328177 + AluSg SINE Alu 1 304 -6 379 245 50 50 chr12 52954312 52954331 -91328158 - MIR SINE MIR -169 93 75 366 23 0 0 chr12 52958058 52958101 -91324388 + (TTATG)n Simple_repeat Simple_repeat 2 44 0 960 123 0 75 chr12 52958122 52958184 -91324305 - AluJo SINE Alu -139 173 108 180 0 0 0 chr12 52958184 52958204 -91324285 + (TTG)n Simple_repeat Simple_repeat 2 21 0 960 123 0 75 chr12 52958204 52958328 -91324161 - AluJo SINE Alu -204 108 1 420 190 22 2 chr12 52958345 52958443 -91324046 + L1PB4 LINE L1 6059 6132 -24 2393 60 0 0 chr12 52958457 52958756 -91323733 - AluY SINE Alu -12 299 1 1969 108 18 0 chr12 52958761 52959081 -91323408 - AluSx SINE Alu 0 325 1 738 187 73 7 chr12 52959081 52959257 -91323232 - AluJo SINE Alu 0 312 135 2115 87 7 13 chr12 52959407 52959705 -91322784 - AluSp SINE Alu -17 296 1 184 314 118 59 chr12 52959771 52959924 -91322565 + L2 LINE L2 2174 2335 -979 2123 86 51 0 chr12 52959927 52960219 -91322270 - AluSc SINE Alu -2 307 1 926 103 0 29 chr12 52960223 52960359 -91322130 - AluJo SINE Alu -169 133 2 2403 47 0 3 chr12 52960371 52960668 -91321821 - AluY SINE Alu -15 296 1 1876 121 17 0 chr12 52960713 52961003 -91321486 - AluJb SINE Alu -17 295 1 214 268 122 0 chr12 52961141 52961223 -91321266 + L2 LINE L2 2487 2578 -736 2174 100 0 0 chr12 52961247 52961546 -91320943 - AluSx SINE Alu -13 299 1 1827 132 13 30 chr12 52962165 52962468 -91320021 - AluJb SINE Alu -14 298 1 1024 143 11 6 chr12 52962723 52962898 -91319591 - AluSg/x SINE Alu -3 309 134 2314 74 3 3 chr12 52962898 52963195 -91319294 - AluSc SINE Alu -11 298 2 2153 101 0 7 chr12 52963203 52963500 -91318989 - AluSx SINE Alu -17 295 1 28 60 0 15 chr12 52963617 52963640 -91318849 + AT_rich Low_complexity Low_complexity 1 23 -43 2281 63 3 0 chr12 52963640 52963926 -91318563 + AluY SINE Alu 1 287 -24 28 60 0 15 chr12 52963926 52963969 -91318520 + AT_rich Low_complexity Low_complexity 23 66 0 1569 155 7 30 chr12 52964564 52964861 -91317628 + AluJo SINE Alu 6 295 -17 1510 124 89 12 chr12 52966357 52966615 -91315874 + AluJb SINE Alu 1 278 -34 1974 148 0 0 chr12 52967107 52967418 -91315071 - AluSx SINE Alu -1 311 1 910 191 205 28 chr12 52967422 52967705 -91314784 + MER20B DNA MER1_type 148 480 -303 830 164 11 79 chr12 52967727 52967869 -91314620 + FRAM SINE Alu 1 130 -172 1921 127 7 13 chr12 52967869 52968169 -91314320 - AluSx SINE Alu -14 298 1 830 164 11 79 chr12 52968169 52968203 -91314286 + FRAM SINE Alu 130 165 -1 531 229 7 57 chr12 52968243 52968383 -91314106 + FLAM_A SINE Alu 1 133 0 1540 198 76 12 chr12 52968454 52968797 -91313692 - MLT1A1 LTR MaLR 0 365 1 1757 146 14 3 chr12 52968825 52969119 -91313370 - AluJo SINE Alu -15 297 1 1451 217 115 22 chr12 52969120 52969532 -91312957 + MLT2B1 LTR ERVL 3 520 0 464 246 165 27 chr12 52969548 52969808 -91312681 - L1ME3 LINE L1 -331 5831 5536 278 238 36 94 chr12 52969813 52969963 -91312526 - L1ME3 LINE L1 -703 5467 5333 2130 103 10 0 chr12 52969963 52970253 -91312236 - AluSx SINE Alu -19 293 1 278 238 36 94 chr12 52970253 52970325 -91312164 - L1ME3 LINE L1 -837 5333 5258 415 313 153 23 chr12 52970566 52970959 -91311530 - L1MEd LINE L1 -5617 502 59 379 328 30 30 chr12 52971159 52971290 -91311199 + L2 LINE L2 3137 3267 -5 2190 99 0 20 chr12 52971315 52971618 -91310871 - AluSg SINE Alu -13 297 1 1998 123 3 3 chr12 52971618 52971917 -91310572 - AluSx SINE Alu -12 300 1 1402 166 25 57 chr12 52972007 52972321 -91310168 - AluJb SINE Alu -8 304 1 896 241 133 78 chr12 52972355 52972546 -91309943 + MLT1G1 LTR MaLR 1 180 -415 1617 180 3 3 chr12 52972546 52972835 -91309654 - AluJo SINE Alu -23 289 1 896 241 133 78 chr12 52972835 52973207 -91309282 + MLT1G1 LTR MaLR 180 595 0 300 111 0 0 chr12 52973285 52973330 -91309159 + (T)n Simple_repeat Simple_repeat 1 45 0 1718 144 70 0 chr12 52973381 52973665 -91308824 + AluSx SINE Alu 2 305 -7 837 114 45 0 chr12 52973723 52973855 -91308634 + FRAM SINE Alu 32 169 -7 216 235 88 0 chr12 52974338 52974406 -91308083 + MIR SINE MIR 63 136 -126 845 86 0 0 chr12 52974655 52974771 -91307718 - AluSg/x SINE Alu -8 304 189 2468 68 0 0 chr12 52976432 52976742 -91305747 + AluSg SINE Alu 1 310 0 1871 136 0 26 chr12 52976968 52977270 -91305219 + AluJo SINE Alu 1 294 -18 2268 88 0 13 chr12 52977271 52977588 -91304901 + AluSp SINE Alu 1 313 0 397 149 56 1 chr12 52977612 52977684 -91304805 + MLT1D LTR MaLR 368 418 -49 2227 97 0 0 chr12 52978945 52979243 -91303246 + AluSg SINE Alu 1 298 -12 1589 171 24 0 chr12 52979252 52979539 -91302950 + AluJo SINE Alu 1 294 -18 755 133 38 0 chr12 52980248 52980460 -91302029 + GA-rich Low_complexity Low_complexity 1 220 0 378 0 0 0 chr12 52980462 52980504 -91301985 + (TG)n Simple_repeat Simple_repeat 2 43 0 2303 77 0 0 chr12 52981344 52981641 -91300848 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr12 52982072 52982095 -91300394 + AT_rich Low_complexity Low_complexity 1 23 0 191 311 286 0 chr12 52982344 52982463 -91300026 + MIR3 SINE MIR 45 197 -11 417 213 100 100 chr12 52984132 52984350 -91298139 - L1M4 LINE L1 -2730 3416 3199 1703 154 0 14 chr12 52984350 52984635 -91297854 + AluJb SINE Alu 1 281 -31 234 0 0 0 chr12 52984639 52984665 -91297824 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2026 129 3 0 chr12 52984665 52984967 -91297522 + AluSx SINE Alu 1 303 -9 417 213 100 100 chr12 52984967 52985042 -91297447 - L1M4 LINE L1 -2948 3198 3117 724 162 17 0 chr12 52985058 52985175 -91297314 - FLAM_C SINE Alu -23 120 2 2059 198 75 43 chr12 52985177 52985437 -91297052 - L1M4 LINE L1 -2997 3149 2899 1794 141 28 3 chr12 52985437 52985727 -91296762 - AluSx SINE Alu -5 307 11 2059 198 75 43 chr12 52985727 52986122 -91296367 - L1M4 LINE L1 -3247 2899 2473 1979 148 0 3 chr12 52986201 52986504 -91295985 - AluJb SINE Alu -10 302 1 2232 109 0 3 chr12 52986809 52987122 -91295367 + AluSx SINE Alu 1 312 0 2144 102 10 0 chr12 52987425 52987719 -91294770 + AluSc SINE Alu 1 297 -12 788 174 0 8 chr12 52988617 52988749 -91293740 + FLAM_C SINE Alu 2 132 -11 972 149 0 0 chr12 52989252 52989413 -91293076 - L1MA6 LINE L1 0 6300 6140 310 122 0 0 chr12 52989414 52989455 -91293034 - Alu SINE Alu -255 47 7 448 239 205 0 chr12 52989458 52989575 -91292914 + MER5A DNA MER1_type 48 188 -1 245 294 119 9 chr12 52989575 52989666 -91292823 + MIR SINE MIR 154 256 -6 2310 80 0 13 chr12 52990006 52990319 -91292170 + AluSg SINE Alu 1 309 -1 264 288 0 41 chr12 52990322 52990395 -91292094 + MIR3 SINE MIR 138 207 -1 403 261 109 0 chr12 52991336 52991455 -91291034 + MIR SINE MIR 131 262 0 2397 34 41 0 chr12 52991730 52992021 -91290468 + AluY SINE Alu 1 303 -8 2158 101 0 16 chr12 52992274 52992580 -91289909 + AluSg SINE Alu 1 301 -9 1251 181 142 0 chr12 52992635 52992917 -91289572 + Charlie1b DNA MER1_type 1 322 -201 1204 134 19 29 chr12 52992936 52993145 -91289344 - AluJb SINE Alu -18 294 88 1827 155 0 0 chr12 52993173 52993464 -91289025 + AluJb SINE Alu 1 291 -21 1824 157 3 3 chr12 52993466 52993765 -91288724 + AluSx SINE Alu 1 299 -13 1970 131 0 26 chr12 52993767 52994080 -91288409 + AluSx SINE Alu 1 305 -7 180 0 0 0 chr12 52994080 52994100 -91288389 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 240 35 0 0 chr12 52994099 52994128 -91288361 + (TG)n Simple_repeat Simple_repeat 2 30 0 642 180 31 8 chr12 52994173 52994301 -91288188 + Charlie1b DNA MER1_type 393 523 0 515 193 30 44 chr12 52994897 52995032 -91287457 - AluSg/x SINE Alu -22 290 158 872 93 62 31 chr12 53045171 53045300 -91237189 + FLAM_C SINE Alu 1 133 0 443 138 31 0 chr12 53045375 53045440 -91237049 - AluJ/FRAM SINE Alu -25 287 221 889 165 0 0 chr12 53045440 53045567 -91236922 - AluJo/FLAM SINE Alu -174 128 2 1845 164 0 41 chr12 53045621 53045800 -91236689 - AluJb SINE Alu -7 305 143 2353 69 0 7 chr12 53045800 53046090 -91236399 - AluSg SINE Alu -22 288 1 1845 164 0 41 chr12 53046090 53046228 -91236261 - AluJb SINE Alu -169 143 1 1865 163 3 3 chr12 53046380 53046686 -91235803 - AluSx SINE Alu -6 306 1 2377 92 0 0 chr12 53047068 53047362 -91235127 + AluSx SINE Alu 1 294 -18 317 262 58 19 chr12 53047364 53047467 -91235022 - L2 LINE L2 -38 3275 3169 369 313 52 70 chr12 53047611 53047883 -91234606 - L2 LINE L2 -493 2821 2555 25 51 0 0 chr12 53048085 53048124 -91234365 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr12 53048477 53048498 -91233991 + (T)n Simple_repeat Simple_repeat 1 21 0 336 185 0 31 chr12 53048516 53048581 -91233908 - AluSp SINE Alu -123 180 118 273 248 109 15 chr12 53048778 53048915 -91233574 + L1ME LINE L1 5331 5480 -641 1585 189 17 17 chr12 53048922 53049213 -91233276 + AluJo SINE Alu 3 293 -19 1088 174 0 0 chr12 53049409 53049570 -91232919 + FRAM SINE Alu 1 161 -5 198 0 0 0 chr12 53049755 53049777 -91232712 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 1421 185 19 0 chr12 53050195 53050454 -91232035 - L1MB7 LINE L1 -16 6168 5905 2239 108 3 0 chr12 53050580 53050877 -91231612 + AluSx SINE Alu 1 298 -14 2134 128 3 16 chr12 53050979 53051284 -91231205 + AluSx SINE Alu 1 301 -11 226 250 0 0 chr12 53051313 53051361 -91231128 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 2192 99 0 3 chr12 53052363 53052676 -91229813 - AluSq SINE Alu 0 314 3 262 167 0 90 chr12 53053774 53053792 -91228697 + LTR56 LTR ERV1 318 336 -109 2142 101 27 0 chr12 53053792 53054090 -91228399 + AluSx SINE Alu 1 306 -6 2245 105 0 3 chr12 53054098 53054394 -91228095 + AluSp SINE Alu 1 295 -18 262 167 0 90 chr12 53054394 53054444 -91228045 + LTR56 LTR ERV1 343 388 -57 26 30 0 0 chr12 53054447 53054480 -91228009 + AT_rich Low_complexity Low_complexity 1 33 0 281 299 110 79 chr12 53054741 53054950 -91227539 - L2 LINE L2 -160 3112 2890 2125 119 3 3 chr12 53054950 53055244 -91227245 - AluSx SINE Alu -18 294 1 281 299 110 79 chr12 53055244 53055325 -91227164 - L2 LINE L2 -382 2890 2813 1815 155 0 40 chr12 53055722 53056026 -91226463 - AluJo SINE Alu -16 296 5 2211 105 10 0 chr12 53056924 53057219 -91225270 + AluSx SINE Alu 2 299 -13 297 256 0 24 chr12 53057359 53057441 -91225048 + MIR SINE MIR 183 262 0 189 0 0 0 chr12 53058380 53058401 -91224088 + (T)n Simple_repeat Simple_repeat 1 21 0 1863 149 0 45 chr12 53059077 53059239 -91223250 - AluJo SINE Alu -17 295 152 2182 97 10 3 chr12 53059239 53059527 -91222962 - AluSx SINE Alu -22 290 1 1863 149 0 45 chr12 53059527 53059673 -91222816 - AluJo SINE Alu -160 152 1 596 141 33 0 chr12 53059696 53059788 -91222701 + AluS SINE Alu 2 96 -217 1893 176 3 0 chr12 53059888 53060194 -91222295 + AluSx SINE Alu 1 307 -5 1968 136 6 41 chr12 53060196 53060513 -91221976 + AluJb SINE Alu 1 306 -6 2045 109 0 0 chr12 53060523 53060788 -91221701 + AluSq SINE Alu 35 299 -14 2550 47 0 31 chr12 53061680 53062001 -91220488 + AluY SINE Alu 1 311 0 219 338 0 0 chr12 53062028 53062096 -91220393 + CT-rich Low_complexity Low_complexity 1 68 0 679 221 237 28 chr12 53062100 53062221 -91220268 - L2 LINE L2 -2 3311 3217 2298 103 0 13 chr12 53062221 53062533 -91219956 + AluSx SINE Alu 1 308 -4 679 221 237 28 chr12 53062533 53062847 -91219642 - L2 LINE L2 -96 3217 2702 3014 23 0 6 chr12 53062850 53063200 -91219289 - L1PA5 LINE L1 0 6154 5807 331 71 0 0 chr12 53063209 53063251 -91219238 + AluJ/FLAM SINE Alu 23 64 -238 528 118 0 0 chr12 53063252 53063328 -91219161 + FLAM SINE Alu 42 117 -26 479 253 47 20 chr12 53063356 53063506 -91218983 - L2 LINE L2 -641 2673 2520 782 163 7 15 chr12 53063542 53063677 -91218812 + FLAM_C SINE Alu 8 141 -2 1482 230 165 24 chr12 53063683 53064278 -91218211 - L2 LINE L2 -860 2454 1776 2586 39 3 22 chr12 53064399 53064711 -91217778 + AluY SINE Alu 1 306 -5 245 341 43 58 chr12 53064732 53064940 -91217549 - L2 LINE L2 -167 3105 2901 1997 114 43 4 chr12 53065029 53065309 -91217180 + AluSx SINE Alu 1 291 -21 253 192 72 24 chr12 53065329 53065441 -91217048 + L1P5 LINE L1 5364 5444 -712 1045 90 21 7 chr12 53065924 53066068 -91216421 + AluSg/x SINE Alu 144 289 -21 2250 93 7 3 chr12 53066085 53066374 -91216115 + AluSq SINE Alu 1 290 -23 249 33 0 0 chr12 53066374 53066404 -91216085 + (TA)n Simple_repeat Simple_repeat 2 31 0 2061 131 13 3 chr12 53066408 53066706 -91215783 + AluJb SINE Alu 2 302 -10 229 267 0 11 chr12 53066706 53066796 -91215693 - L1MC4 LINE L1 -1340 6702 6614 507 58 0 58 chr12 53066796 53066899 -91215590 + (TA)n Simple_repeat Simple_repeat 2 98 0 243 88 0 0 chr12 53067360 53067394 -91215095 + (CA)n Simple_repeat Simple_repeat 1 34 0 24 53 0 0 chr12 53068184 53068222 -91214267 + AT_rich Low_complexity Low_complexity 1 38 0 2089 101 35 14 chr12 53068223 53068511 -91213978 - AluSg SINE Alu -16 294 1 207 0 0 0 chr12 53068516 53068539 -91213950 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2423 62 0 3 chr12 53068542 53068833 -91213656 - AluY SINE Alu -21 290 1 1717 177 0 17 chr12 53068835 53069134 -91213355 - AluJb SINE Alu -18 294 1 1762 154 43 27 chr12 53069242 53069541 -91212948 - AluJo SINE Alu -8 304 1 324 0 0 0 chr12 53069652 53069688 -91212801 + (A)n Simple_repeat Simple_repeat 1 36 0 2331 86 0 42 chr12 53069691 53070004 -91212485 + AluSp SINE Alu 1 300 -13 2319 97 13 0 chr12 53070058 53070358 -91212131 + AluSg SINE Alu 1 304 -6 2071 125 7 0 chr12 53070360 53070647 -91211842 + AluSg SINE Alu 1 289 -21 1716 194 3 7 chr12 53071105 53071398 -91211091 - AluJo SINE Alu -20 292 1 2361 97 0 0 chr12 53071574 53071872 -91210617 - AluSx SINE Alu -14 298 1 877 178 87 17 chr12 53072138 53072368 -91210121 - MER63 DNA MER1_type -815 246 1 1343 113 32 0 chr12 53072922 53073107 -91209382 - AluSg/x SINE Alu -17 293 103 2025 146 7 3 chr12 53073108 53073416 -91209073 + AluSx SINE Alu 1 309 -3 1951 149 13 10 chr12 53073476 53073784 -91208705 - AluSx SINE Alu -3 309 1 2329 104 16 0 chr12 53073962 53074269 -91208220 + AluSx SINE Alu 1 312 0 2374 89 0 26 chr12 53074861 53075174 -91207315 + AluSq SINE Alu 1 305 -8 1677 151 21 25 chr12 53075183 53075495 -91206994 + AluJo SINE Alu 1 311 0 180 0 0 0 chr12 53075615 53075635 -91206854 + (CA)n Simple_repeat Simple_repeat 2 21 0 2089 114 0 52 chr12 53076627 53076951 -91205538 - AluSx SINE Alu -5 307 1 287 267 53 40 chr12 53077216 53077366 -91205123 + MIR SINE MIR 43 194 -68 243 0 0 0 chr12 53077846 53077873 -91204616 + (CA)n Simple_repeat Simple_repeat 1 27 0 2013 109 4 0 chr12 53078348 53078613 -91203876 + AluSg SINE Alu 1 266 -44 180 0 0 0 chr12 53078613 53078633 -91203856 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2245 42 11 21 chr12 53079276 53079590 -91202899 - AluY SINE Alu 0 315 5 1511 149 73 43 chr12 53079873 53080175 -91202314 - AluJb SINE Alu -1 311 1 2662 42 7 3 chr12 53080594 53080902 -91201587 + AluY SINE Alu 1 309 -2 324 116 0 0 chr12 53081784 53081827 -91200662 + tRNA-Gly-GGA tRNA tRNA 1 43 -32 1870 130 4 11 chr12 53081918 53082188 -91200301 - AluSx SINE Alu -12 300 33 1712 128 0 0 chr12 53082284 53082511 -91199978 + AluSp SINE Alu 1 227 -86 1980 138 0 7 chr12 53082659 53082948 -91199541 + AluSq SINE Alu 7 293 -20 755 172 0 0 chr12 53082975 53083091 -91199398 - FLAM_C SINE Alu -17 116 1 1008 104 14 7 chr12 53083547 53083691 -91198798 + AluSg/x SINE Alu 133 277 -35 948 164 88 0 chr12 53086582 53086753 -91195736 - LTR47A LTR ERVL -6 446 261 2331 92 0 0 chr12 53088296 53088606 -91193883 + AluSg SINE Alu 1 310 0 1928 151 3 0 chr12 53088766 53089065 -91193424 - AluSx SINE Alu -12 300 1 2412 96 3 0 chr12 53089591 53089894 -91192595 - AluSg SINE Alu -6 304 1 2311 97 0 0 chr12 53090205 53090504 -91191985 - AluSg SINE Alu -11 299 1 200 336 67 0 chr12 53092055 53092174 -91190315 - L3 LINE CR1 -5 1572 1446 200 322 56 0 chr12 53092177 53092267 -91190222 - L3 LINE CR1 -174 1403 1309 2420 92 0 0 chr12 53092292 53092595 -91189894 - AluY SINE Alu -8 303 1 1182 157 120 62 chr12 53092835 53092940 -91189549 + AluJo SINE Alu 14 111 -201 2038 99 4 15 chr12 53092940 53093100 -91189389 - AluSx SINE Alu -19 293 136 2118 131 7 0 chr12 53093100 53093406 -91189083 - AluSx SINE Alu -4 308 1 2038 99 4 15 chr12 53093406 53093518 -91188971 - AluSx SINE Alu -176 136 24 1182 157 120 62 chr12 53093518 53093686 -91188803 + AluJo SINE Alu 111 303 -9 266 119 0 24 chr12 53093687 53093729 -91188760 + Alu SINE Alu 1 41 -259 1550 111 0 0 chr12 53093864 53094062 -91188427 - AluSc SINE Alu -111 198 1 1649 159 60 26 chr12 53094481 53094783 -91187706 + AluJb SINE Alu 1 312 0 2145 119 0 3 chr12 53095059 53095369 -91187120 + AluSx SINE Alu 1 309 0 1683 164 17 14 chr12 53095550 53095842 -91186647 - AluJo SINE Alu -19 293 1 2226 112 3 0 chr12 53095910 53096215 -91186274 - AluSx SINE Alu -4 308 3 23 33 0 0 chr12 53096576 53096606 -91185883 + AT_rich Low_complexity Low_complexity 1 30 0 180 111 0 0 chr12 53098512 53098539 -91183950 + (GGGAGA)n Simple_repeat Simple_repeat 4 30 0 2111 133 0 0 chr12 53099060 53099362 -91183127 + AluSg SINE Alu 1 302 -8 2365 90 0 0 chr12 53099613 53099912 -91182577 + AluSx SINE Alu 1 299 -13 295 294 0 0 chr12 53100497 53100582 -91181907 + L1ME4a LINE L1 5819 5903 -218 1045 152 0 13 chr12 53100595 53100753 -91181736 - AluJo/FRAM SINE Alu -10 292 137 2482 82 3 0 chr12 53100754 53101059 -91181430 - AluSp SINE Alu -7 306 1 22 0 0 0 chr12 53101093 53101115 -91181374 + AT_rich Low_complexity Low_complexity 1 22 0 2001 133 31 0 chr12 53101415 53101701 -91180788 - AluSx SINE Alu -17 295 1 270 188 132 51 chr12 53101781 53101885 -91180604 - L1MC/D LINE L1 -858 5445 5357 1746 149 22 4 chr12 53101885 53102195 -91180294 - AluJb SINE Alu 0 319 5 270 188 132 51 chr12 53102195 53102225 -91180264 - L1MC/D LINE L1 -946 5357 5331 2191 98 7 7 chr12 53102418 53102715 -91179774 + AluSc SINE Alu 3 299 -10 1354 91 11 0 chr12 53102715 53102890 -91179599 + AluSg/x SINE Alu 134 310 -2 189 74 0 0 chr12 53102890 53102917 -91179572 + (TA)n Simple_repeat Simple_repeat 1 27 0 2118 146 87 8 chr12 53102920 53103290 -91179199 - LTR24 LTR ERV1 -35 432 34 1834 161 55 0 chr12 53103302 53103593 -91178896 - AluJb SINE Alu -5 307 1 2277 89 0 16 chr12 53106473 53106801 -91175688 - AluSg SINE Alu 0 324 2 2503 59 0 3 chr12 53106877 53107182 -91175307 + AluY SINE Alu 1 304 -7 1932 138 7 3 chr12 53107191 53107481 -91175008 + AluSc SINE Alu 1 291 -18 341 289 161 17 chr12 53107482 53107662 -91174827 - L2 LINE L2 -84 3229 3024 317 189 0 54 chr12 53107722 53107831 -91174658 - AluSx SINE Alu 0 302 233 1518 108 0 0 chr12 53107831 53108026 -91174463 - AluSx SINE Alu -117 195 1 342 0 0 0 chr12 53108394 53108432 -91174057 + (T)n Simple_repeat Simple_repeat 1 38 0 808 148 8 8 chr12 53108817 53108939 -91173550 - FRAM SINE Alu -14 162 41 354 100 0 0 chr12 53109902 53109952 -91172537 + 5S rRNA rRNA 1 50 -71 332 188 129 20 chr12 53110266 53110367 -91172122 + MIR SINE MIR 90 201 -61 2118 112 0 45 chr12 53110375 53110551 -91171938 - AluSx SINE Alu -13 299 142 2298 93 0 19 chr12 53110551 53110862 -91171627 - AluSg SINE Alu -5 305 1 2118 112 0 45 chr12 53110862 53110998 -91171491 - AluSx SINE Alu -170 142 1 2144 139 7 0 chr12 53111592 53111902 -91170587 + AluJb SINE Alu 1 312 0 2509 89 0 0 chr12 53112411 53112714 -91169775 + AluSg SINE Alu 1 303 -7 299 310 108 35 chr12 53112888 53113146 -91169343 + L2 LINE L2 2544 2820 -494 300 253 126 11 chr12 53113327 53113422 -91169067 + MER5A DNA MER1_type 1 106 -83 1076 140 0 13 chr12 53113449 53113599 -91168890 + FRAM SINE Alu 1 148 -18 22 0 0 0 chr12 53113600 53113622 -91168867 + AT_rich Low_complexity Low_complexity 1 22 0 984 218 110 45 chr12 53113622 53114059 -91168430 + MLT1G1 LTR MaLR 10 529 -66 2174 104 0 17 chr12 53114064 53114388 -91168101 - AluSx SINE Alu 0 319 1 889 201 54 44 chr12 53114457 53114661 -91167828 + MER3 DNA MER1_type 4 209 0 27 49 0 0 chr12 53114822 53114863 -91167626 + AT_rich Low_complexity Low_complexity 1 41 0 418 262 103 0 chr12 53115357 53115464 -91167025 + MIR3 SINE MIR 82 199 -9 248 302 70 23 chr12 53115756 53115885 -91166604 + MIR SINE MIR 77 211 -51 2016 125 30 23 chr12 53116469 53116773 -91165716 + AluSq SINE Alu 1 306 -7 1540 112 164 19 chr12 53116780 53117048 -91165441 + AluJo SINE Alu 1 307 -5 232 266 138 0 chr12 53117306 53117400 -91165089 + MIR SINE MIR 146 252 -10 2243 105 0 13 chr12 53117798 53118103 -91164386 + AluSx SINE Alu 1 301 -11 197 373 97 53 chr12 53118467 53118695 -91163794 - L2 LINE L2 -93 3179 2942 2339 88 7 3 chr12 53118757 53119062 -91163427 + AluSq SINE Alu 1 306 -7 503 277 89 30 chr12 53119744 53119946 -91162543 - MIR SINE MIR -38 224 11 2250 108 3 7 chr12 53120204 53120511 -91161978 + AluSx SINE Alu 1 306 -6 199 335 67 22 chr12 53120628 53120807 -91161682 - L2 LINE L2 -784 2530 2344 423 261 127 14 chr12 53120831 53120973 -91161516 - MIR3 SINE MIR -30 178 21 1518 108 0 0 chr12 53121237 53121432 -91161057 + AluSx SINE Alu 1 195 -117 317 181 0 56 chr12 53121434 53121541 -91160948 + AluSx SINE Alu 235 302 0 1849 146 26 16 chr12 53121732 53122085 -91160404 + AluJb SINE Alu 1 356 0 2367 77 0 20 chr12 53122353 53122653 -91159836 - AluSg SINE Alu -16 294 1 668 200 0 0 chr12 53122699 53122804 -91159685 - U6 snRNA snRNA -2 105 1 2171 227 105 57 chr12 53122806 53123709 -91158780 - L1MD3 LINE L1 -11 7984 7038 409 186 0 0 chr12 53123740 53123799 -91158690 - FLAM SINE Alu -25 118 60 3668 84 25 2 chr12 53123799 53124285 -91158204 + LTR3b LTR ERVK 2 498 -2 461 149 0 15 chr12 53124285 53124352 -91158137 - AluJ/FLAM SINE Alu -245 67 2 2176 192 44 91 chr12 53124353 53124760 -91157729 - L1MD3 LINE L1 -944 7051 6626 198 0 0 0 chr12 53124760 53124782 -91157707 + (TG)n Simple_repeat Simple_repeat 1 22 0 1644 152 15 8 chr12 53124792 53125056 -91157433 - AluJb SINE Alu -46 266 1 2176 192 44 91 chr12 53125056 53125099 -91157390 - L1MD3 LINE L1 -1378 6617 6574 2481 82 0 0 chr12 53125099 53125405 -91157084 - AluSc SINE Alu -3 306 1 2176 192 44 91 chr12 53125405 53125536 -91156953 - L1MD3 LINE L1 -1421 6574 6486 2402 88 0 3 chr12 53126603 53126908 -91155581 - AluSq SINE Alu -9 304 1 209 250 87 43 chr12 53127284 53127376 -91155113 + MIR SINE MIR 6 101 -161 2371 61 3 3 chr12 53127502 53127795 -91154694 - AluY SINE Alu -2 309 17 181 292 0 56 chr12 53128015 53128087 -91154402 + L2 LINE L2 3011 3078 -194 995 179 6 6 chr12 53128134 53128290 -91154199 - FRAM SINE Alu -10 156 1 261 235 88 0 chr12 53128311 53128379 -91154110 + L2 LINE L2 3235 3308 -5 492 254 30 22 chr12 53128743 53128877 -91153612 - MER5A DNA MER1_type 0 189 55 1572 183 47 0 chr12 53128951 53129073 -91153416 + AluJo SINE Alu 1 116 -196 510 17 0 0 chr12 53129073 53129132 -91153357 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 1572 183 47 0 chr12 53129132 53129283 -91153206 + AluJo SINE Alu 116 287 -25 432 281 61 9 chr12 53129739 53129853 -91152636 + MIR3 SINE MIR 35 154 -54 725 235 66 37 chr12 53129854 53130097 -91152392 - MER112 DNA MER1_type -1 259 10 2427 148 29 8 chr12 53130097 53130244 -91152245 + L1MB8 LINE L1 5493 5635 -543 261 0 0 0 chr12 53130244 53130273 -91152216 + (TG)n Simple_repeat Simple_repeat 2 30 0 488 77 0 39 chr12 53130274 53130378 -91152111 + (TA)n Simple_repeat Simple_repeat 1 100 0 2427 148 29 8 chr12 53130378 53130842 -91151647 + L1MB8 LINE L1 5634 6169 -9 457 267 207 0 chr12 53130999 53131149 -91151340 + MIR SINE MIR 51 231 -31 1931 156 10 3 chr12 53131329 53131631 -91150858 + AluJb SINE Alu 1 304 -8 2381 81 7 0 chr12 53131698 53131993 -91150496 + AluSp SINE Alu 1 297 -16 21 57 0 0 chr12 53132047 53132082 -91150407 + AT_rich Low_complexity Low_complexity 1 35 0 708 192 8 0 chr12 53132671 53132801 -91149688 - MIR SINE MIR -28 234 104 858 287 98 34 chr12 53132883 53133355 -91149134 - L1MC4a LINE L1 -651 5515 5355 2055 105 0 46 chr12 53133357 53133520 -91148969 - AluSx SINE Alu -16 296 152 2396 81 0 7 chr12 53133520 53133829 -91148660 - AluY SINE Alu -4 307 1 2055 105 0 46 chr12 53133829 53133971 -91148518 - AluSx SINE Alu -160 152 5 2345 100 0 0 chr12 53133986 53134276 -91148213 - AluSc SINE Alu -19 290 1 731 183 8 8 chr12 53134282 53134413 -91148076 - FLAM_C SINE Alu -2 131 1 647 225 15 58 chr12 53134963 53135053 -91147436 - MIR SINE MIR -15 247 155 216 0 0 0 chr12 53135053 53135077 -91147412 + (TTA)n Simple_repeat Simple_repeat 2 25 0 926 111 0 0 chr12 53135080 53135197 -91147292 - FLAM_C SINE Alu -16 117 1 647 225 15 58 chr12 53135197 53135338 -91147151 - MIR SINE MIR -109 153 23 220 275 116 0 chr12 53135511 53135580 -91146909 + MIR SINE MIR 67 143 -65 494 188 50 149 chr12 53135635 53135816 -91146673 - MIR SINE MIR 0 262 100 2343 89 10 3 chr12 53136099 53136403 -91146086 + AluSp SINE Alu 4 309 -4 2394 85 10 3 chr12 53136411 53136718 -91145771 + AluSp SINE Alu 1 309 -4 1997 152 0 19 chr12 53136775 53137091 -91145398 + AluJb SINE Alu 1 310 -2 2366 63 0 0 chr12 53137288 53137573 -91144916 + AluY SINE Alu 20 304 -7 1020 193 0 0 chr12 53137583 53137744 -91144745 + FRAM SINE Alu 1 161 -5 311 100 20 0 chr12 53138224 53138274 -91144215 + L2 LINE L2 3262 3312 -1 2484 69 0 7 chr12 53138766 53139069 -91143420 + AluSp SINE Alu 1 301 -12 2469 66 0 10 chr12 53139224 53139526 -91142963 + AluY SINE Alu 1 299 -12 1143 92 0 0 chr12 53139571 53139713 -91142776 - AluSq/x SINE Alu -171 142 1 255 248 78 20 chr12 53139846 53139968 -91142521 + MIR SINE MIR 94 223 -39 976 254 81 60 chr12 53140670 53140762 -91141727 - L2 LINE L2 0 3313 3224 1969 131 7 3 chr12 53140762 53141052 -91141437 + AluSc SINE Alu 1 291 -18 976 254 81 60 chr12 53141052 53141344 -91141145 - L2 LINE L2 -89 3224 2921 2056 114 7 36 chr12 53141533 53141841 -91140648 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr12 53142054 53142076 -91140413 + AT_rich Low_complexity Low_complexity 1 22 0 258 316 62 31 chr12 53142076 53142269 -91140220 - L2 LINE L2 -237 3035 2837 472 341 17 6 chr12 53142359 53142532 -91139957 - MER5A DNA MER1_type -14 175 1 2159 119 3 0 chr12 53143047 53143341 -91139148 + AluSx SINE Alu 1 295 -17 375 340 92 0 chr12 53143958 53144111 -91138378 - MIR3 SINE MIR -38 170 4 241 175 143 0 chr12 53144344 53144407 -91138082 + L1ME4a LINE L1 5355 5426 -695 1008 111 7 7 chr12 53144453 53144597 -91137892 + AluSq/x SINE Alu 1 144 -168 2327 69 0 7 chr12 53144597 53144885 -91137604 + AluY SINE Alu 1 286 -25 1138 218 112 70 chr12 53144896 53145452 -91137037 + L1ME4a LINE L1 5483 6067 -54 2355 106 3 0 chr12 53145452 53145763 -91136726 - AluSx SINE Alu 0 312 1 1138 218 112 70 chr12 53145763 53145806 -91136683 + L1ME4a LINE L1 6067 6107 -14 33 25 0 0 chr12 53145806 53145846 -91136643 + AT_rich Low_complexity Low_complexity 1 40 0 2665 35 0 13 chr12 53146603 53146916 -91135573 - AluY SINE Alu -2 309 1 190 308 208 0 chr12 53148366 53148486 -91134003 + L2 LINE L2 3127 3271 -1 945 114 0 8 chr12 53148992 53149123 -91133366 - FLAM_C SINE Alu -3 130 1 28 48 0 0 chr12 53149984 53150026 -91132463 + GC_rich Low_complexity Low_complexity 1 42 0 462 254 88 63 chr12 53150881 53151086 -91131403 - MER93a LTR ERV1 -58 344 135 2275 102 0 0 chr12 53151112 53151415 -91131074 + AluSx SINE Alu 1 303 -9 500 171 11 0 chr12 53151731 53151819 -91130670 - MER63 DNA MER1_type -39 1023 935 899 214 0 6 chr12 53151825 53151998 -91130491 + AluJo SINE Alu 121 292 -20 1261 164 59 8 chr12 53152003 53152259 -91130230 - MER63 DNA MER1_type -144 916 648 753 167 7 49 chr12 53152264 53152408 -91130081 - MER58B DNA MER1_type -5 336 199 1747 143 13 40 chr12 53152408 53152708 -91129781 + AluJb SINE Alu 1 292 -20 2210 96 0 48 chr12 53153002 53153314 -91129175 + AluSg SINE Alu 1 297 -13 770 147 9 9 chr12 53153480 53153589 -91128900 - FLAM_C SINE Alu -33 110 2 2314 92 7 7 chr12 53153630 53153935 -91128554 - AluSx SINE Alu -7 305 1 544 115 115 19 chr12 53153966 53154070 -91128419 + LTR9B LTR ERV1 445 558 -86 231 88 0 0 chr12 53154070 53154104 -91128385 + (CA)n Simple_repeat Simple_repeat 1 34 0 468 174 21 118 chr12 53154133 53154277 -91128212 + FLAM_C SINE Alu 11 140 -3 923 277 36 45 chr12 53154280 53154612 -91127877 + L1MC/D LINE L1 5490 5815 -574 697 108 0 92 chr12 53154620 53154691 -91127798 + L1MB3 LINE L1 6066 6121 -62 2195 117 3 0 chr12 53154691 53154990 -91127499 + AluSx SINE Alu 1 300 -12 697 108 0 92 chr12 53154990 53155048 -91127441 + L1MB3 LINE L1 6121 6183 0 1681 178 38 3 chr12 53155048 53155368 -91127121 + L1M4 LINE L1 4764 5094 -1052 265 260 0 0 chr12 53155371 53155448 -91127041 + T-rich Low_complexity Low_complexity 1 77 0 480 168 27 130 chr12 53155467 53155560 -91126929 + L1M4 LINE L1 5075 5176 -970 2075 128 0 0 chr12 53155560 53155884 -91126605 + AluSx SINE Alu 1 324 0 480 168 27 130 chr12 53155884 53155912 -91126577 + L1M4 LINE L1 5176 5205 -941 2166 104 29 16 chr12 53155912 53156220 -91126269 + AluSx SINE Alu 1 312 0 480 168 27 130 chr12 53156220 53156281 -91126208 + L1M4 LINE L1 5205 5240 -906 1517 292 121 51 chr12 53156376 53156632 -91125857 - L2 LINE L2 -5 3308 3071 515 145 0 94 chr12 53156632 53156692 -91125797 + L1MA7 LINE L1 6185 6230 -61 1815 170 7 10 chr12 53156692 53156992 -91125497 + AluSx SINE Alu 1 299 -13 515 145 0 94 chr12 53156992 53157048 -91125441 + L1MA7 LINE L1 6230 6290 -1 1745 162 7 0 chr12 53157053 53157332 -91125157 + AluJo SINE Alu 5 286 -22 588 14 0 0 chr12 53157332 53157401 -91125088 + (CATAA)n Simple_repeat Simple_repeat 2 70 0 1517 292 121 51 chr12 53157405 53158403 -91124086 - L2 LINE L2 -245 3068 1885 406 283 33 20 chr12 53158412 53158564 -91123925 - L1MC/D LINE L1 -2028 5780 5627 342 0 0 0 chr12 53159269 53159307 -91123182 + (T)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr12 53159370 53159400 -91123089 + GC_rich Low_complexity Low_complexity 1 30 0 1796 119 34 10 chr12 53160396 53160690 -91121799 + AluSx SINE Alu 1 301 -11 555 257 94 23 chr12 53160850 53161021 -91121468 + MIR SINE MIR 34 216 -46 539 234 48 43 chr12 53161087 53161216 -91121273 + HsTC2 DNA Tc2 78 210 -1688 2018 118 3 3 chr12 53161216 53161512 -91120977 - AluSq SINE Alu -17 296 1 539 234 48 43 chr12 53161512 53161591 -91120898 + HsTC2 DNA Tc2 210 287 -1611 306 151 119 5 chr12 53161589 53161722 -91120767 + HsTC2 DNA Tc2 1688 1895 -3 * 213 39 0 0 chr12 53161972 53161998 -91120491 + (T)n Simple_repeat Simple_repeat 1 26 0 1936 95 53 3 chr12 53162350 53162635 -91119854 - AluSq SINE Alu -14 299 1 1836 159 0 0 chr12 53162953 53163249 -91119240 + AluSx SINE Alu 1 296 -16 580 261 0 0 chr12 53163922 53164041 -91118448 + L1MC4a LINE L1 6479 6597 -1211 2144 83 0 26 chr12 53164052 53164354 -91118135 + AluSc SINE Alu 1 294 -15 183 80 0 0 chr12 53164402 53164427 -91118062 + (T)n Simple_repeat Simple_repeat 1 25 0 2031 86 47 10 chr12 53164728 53165029 -91117460 - AluSx SINE Alu 0 312 1 1832 131 46 0 chr12 53165390 53165672 -91116817 - AluSx SINE Alu -17 295 1 297 335 43 62 chr12 53165761 53165970 -91116519 + L2 LINE L2 2901 3105 -167 456 255 39 56 chr12 53165996 53166302 -91116187 - AluY SINE Alu 0 301 1 1049 101 0 0 chr12 53167020 53167158 -91115331 + AluSq/x SINE Alu 5 142 -171 2023 127 3 0 chr12 53167203 53167502 -91114987 - AluSx SINE Alu -12 300 1 609 116 0 0 chr12 53167726 53167812 -91114677 + AluJ/FLAM SINE Alu 2 87 -225 585 293 166 36 chr12 53268029 53268534 -91013955 + L2 LINE L2 1698 2268 -1046 481 298 60 7 chr12 53268599 53268750 -91013739 - MIR3 SINE MIR -11 197 39 582 271 118 10 chr12 53269701 53269904 -91012585 - MIR SINE MIR -18 244 20 689 62 115 0 chr12 53270970 53271083 -91011406 - AluY SINE Alu -184 127 2 2055 143 0 0 chr12 53271156 53271450 -91011039 + AluSx SINE Alu 1 294 -18 827 231 127 18 chr12 53272210 53272439 -91010050 + MIR SINE MIR 3 256 -6 213 317 0 37 chr12 53273082 53273164 -91009325 + L2 LINE L2 3012 3090 -182 241 210 81 48 chr12 53273340 53273402 -91009087 - MIR SINE MIR -82 180 117 1732 143 52 21 chr12 53273405 53273692 -91008797 + AluJo SINE Alu 2 297 -15 365 354 11 28 chr12 53274549 53274730 -91007759 + MER5B DNA MER1_type 1 178 0 466 268 109 42 chr12 53275132 53275371 -91007118 - L2 LINE L2 0 3272 3018 21 36 0 0 chr12 53275930 53275958 -91006531 + AT_rich Low_complexity Low_complexity 1 28 0 393 154 64 36 chr12 53276066 53276176 -91006313 - L1ME4a LINE L1 -22 6099 5987 2222 101 0 10 chr12 53276245 53276541 -91005948 - AluSq SINE Alu -20 293 1 1711 141 50 14 chr12 53276733 53277010 -91005479 + AluJo SINE Alu 1 287 -25 414 0 0 0 chr12 53277021 53277067 -91005422 + (CA)n Simple_repeat Simple_repeat 2 47 0 300 27 0 0 chr12 53277066 53277103 -91005386 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 321 26 0 0 chr12 53277139 53277177 -91005312 + (CA)n Simple_repeat Simple_repeat 2 39 0 239 228 64 111 chr12 53277177 53277348 -91005141 - L1ME4a LINE L1 -96 6025 5863 1087 172 101 0 chr12 53277394 53277592 -91004897 - MER20 DNA MER1_type -1 218 1 309 323 167 21 chr12 53277610 53277796 -91004693 - L1ME4a LINE L1 -2058 5750 5538 219 276 48 76 chr12 53277796 53277901 -91004588 + L2 LINE L2 2241 2342 -972 2177 133 0 3 chr12 53277958 53278260 -91004229 - AluSg SINE Alu -9 301 1 204 359 111 45 chr12 53278260 53278458 -91004031 + L2 LINE L2 2488 2698 -616 195 167 0 0 chr12 53279830 53279860 -91002629 - L2 LINE L2 -21 3251 3222 190 319 0 29 chr12 53280447 53280516 -91001973 + L2 LINE L2 3201 3267 -5 1859 167 17 0 chr12 53280969 53281257 -91001232 - AluJb SINE Alu -19 293 1 383 303 69 21 chr12 53281410 53281598 -91000891 + L2 LINE L2 1380 1576 -1738 539 201 53 111 chr12 53281625 53281718 -91000771 + MER97a DNA MER1_type? 1 80 -814 2092 117 3 0 chr12 53281718 53282032 -91000457 + AluSx SINE Alu 1 315 0 539 201 53 111 chr12 53282032 53282126 -91000363 + MER97a DNA MER1_type? 80 178 -716 642 315 51 39 chr12 53282382 53282497 -90999992 + L2 LINE L2 1920 2032 -1282 1865 159 3 10 chr12 53282497 53282806 -90999683 - AluJb SINE Alu -1 311 5 642 315 51 39 chr12 53282806 53282938 -90999551 + L2 LINE L2 2032 2161 -1153 1041 179 5 36 chr12 53282938 53283133 -90999356 - MER5A DNA MER1_type 0 189 1 642 315 51 39 chr12 53283133 53283351 -90999138 + L2 LINE L2 2161 2392 -922 2434 63 7 10 chr12 53283577 53283877 -90998612 - AluSc SINE Alu -10 299 1 401 252 24 0 chr12 53284022 53284145 -90998344 - L1M4 LINE L1 -3617 2529 2404 2509 80 3 0 chr12 53284288 53284600 -90997889 - AluSp SINE Alu 0 313 1 1815 146 0 57 chr12 53284757 53284863 -90997626 - AluSx SINE Alu -15 297 187 2318 89 0 0 chr12 53284863 53285154 -90997335 - AluSc SINE Alu -18 291 1 1815 146 0 57 chr12 53285154 53285362 -90997127 - AluSx SINE Alu -125 187 1 895 129 0 50 chr12 53285620 53285760 -90996729 - FLAM_C SINE Alu 0 133 1 1906 132 32 0 chr12 53285834 53286115 -90996374 + AluSx SINE Alu 1 290 -22 2223 121 7 0 chr12 53286317 53286624 -90995865 - AluSx SINE Alu -3 309 1 902 118 0 0 chr12 53286749 53286868 -90995621 - FLAM_C SINE Alu -14 119 1 715 144 29 0 chr12 53287062 53287166 -90995323 + U6 snRNA snRNA 1 107 0 1892 127 49 3 chr12 53287286 53287570 -90994919 + AluJb SINE Alu 1 297 -15 294 279 15 0 chr12 53288264 53288332 -90994157 - L2 LINE L2 -18 3295 3227 332 306 178 18 chr12 53288335 53288616 -90993873 + L2 LINE L2 2974 3299 -14 25 0 0 0 chr12 53289713 53289738 -90992751 + AT_rich Low_complexity Low_complexity 1 25 0 197 233 0 0 chr12 53290962 53291005 -90991484 + MIR SINE MIR 150 192 -70 226 381 102 11 chr12 53291102 53291278 -90991211 + L2 LINE L2 2809 3000 -272 180 183 100 50 chr12 53292410 53292470 -90990019 + MER5A DNA MER1_type 124 186 -3 946 170 75 0 chr12 53292606 53292688 -90989801 - MER46A DNA MER2_type -2 234 139 227 207 248 41 chr12 53292688 53292809 -90989680 + MER46A DNA MER2_type 4 149 -87 1127 88 7 7 chr12 53292880 53293027 -90989462 - AluSg/x SINE Alu -13 299 153 1007 172 19 56 chr12 53293027 53293242 -90989247 - MLT1H1 LTR MaLR -97 458 252 1930 141 57 42 chr12 53293540 53293894 -90988595 + L1MB1 LINE L1 5805 6163 -5 186 114 182 0 chr12 53294398 53294442 -90988047 + MIR SINE MIR 133 184 -78 266 343 0 96 chr12 53294761 53294864 -90987625 - L2 LINE L2 0 3272 3189 2248 96 10 0 chr12 53294864 53295156 -90987333 + AluSq SINE Alu 1 295 -18 266 343 0 96 chr12 53295156 53295218 -90987271 - L2 LINE L2 -83 3189 3123 351 332 14 23 chr12 53295946 53296149 -90986340 - L2 LINE L2 -199 3073 2778 216 232 14 58 chr12 53296191 53296260 -90986229 + L2 LINE L2 3233 3298 -15 2294 75 3 14 chr12 53296294 53296587 -90985902 + AluY SINE Alu 1 290 -21 243 61 0 0 chr12 53296816 53296849 -90985640 + (TG)n Simple_repeat Simple_repeat 2 34 0 423 0 0 0 chr12 53297195 53297242 -90985247 + (TG)n Simple_repeat Simple_repeat 2 48 0 455 102 0 0 chr12 53297516 53297575 -90984914 + AluJ/FLAM SINE Alu 11 69 -243 400 247 108 116 chr12 53299000 53299249 -90983240 + L1ME4a LINE L1 5573 5818 -303 1868 167 0 7 chr12 53299249 53299549 -90982940 - AluJo SINE Alu -14 298 1 400 247 108 116 chr12 53299549 53299780 -90982709 + L1ME4a LINE L1 5818 6049 -72 2214 88 4 0 chr12 53299904 53300204 -90982285 - AluSg SINE Alu 0 307 7 2041 146 0 0 chr12 53300224 53300511 -90981978 - AluSx SINE Alu -25 287 1 1018 207 16 0 chr12 53300867 53301055 -90981434 - AluJb SINE Alu -37 275 85 1998 104 34 0 chr12 53301622 53301890 -90980599 + AluSx SINE Alu 1 277 -35 183 42 0 0 chr12 53301902 53301926 -90980563 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 279 239 32 53 chr12 53302199 53302345 -90980144 - L1M LINE L1 -738 5416 5264 1707 182 13 3 chr12 53302346 53302653 -90979836 + AluJb SINE Alu 1 310 -2 1959 190 34 63 chr12 53302748 53302825 -90979664 + L1MB1 LINE L1 3039 3117 -3029 2304 107 0 0 chr12 53302825 53303124 -90979365 + AluSx SINE Alu 2 300 -12 1959 190 34 63 chr12 53303124 53303356 -90979133 + L1MB1 LINE L1 3117 3354 -2792 1517 166 36 19 chr12 53303356 53303663 -90978826 + AluJb SINE Alu 1 312 0 1959 190 34 63 chr12 53303663 53303935 -90978554 + L1MB1 LINE L1 3354 3604 -2542 773 112 9 26 chr12 53303936 53304052 -90978437 + FRAM SINE Alu 46 159 -17 4684 191 30 29 chr12 53304052 53304451 -90978038 + L1MB1 LINE L1 4322 4719 -1449 2103 116 3 30 chr12 53304451 53304612 -90977877 - AluSx SINE Alu -19 293 129 330 26 0 0 chr12 53304612 53304651 -90977838 + (TG)n Simple_repeat Simple_repeat 2 40 0 199 0 65 0 chr12 53304653 53304684 -90977805 + (TA)n Simple_repeat Simple_repeat 2 34 0 1933 128 14 4 chr12 53304684 53304965 -90977524 - AluSg SINE Alu -26 284 1 2103 116 3 30 chr12 53304965 53305100 -90977389 - AluSx SINE Alu -182 130 1 4684 191 30 29 chr12 53305100 53305128 -90977361 + L1MB1 LINE L1 4719 4745 -1423 746 168 0 46 chr12 53305128 53305259 -90977230 + FLAM_C SINE Alu 1 125 -8 4684 191 30 29 chr12 53305259 53306685 -90975804 + L1MB1 LINE L1 4745 6168 0 2334 89 0 3 chr12 53306776 53307069 -90975420 - AluSq SINE Alu -19 294 3 1985 146 0 7 chr12 53307132 53307426 -90975063 - AluSx SINE Alu -20 292 1 943 306 94 17 chr12 53307429 53308247 -90974242 - L1M4 LINE L1 -1156 4990 4110 2315 78 0 7 chr12 53308335 53308628 -90973861 + AluY SINE Alu 1 291 -20 2334 89 0 3 chr12 53308691 53308984 -90973505 + AluSq SINE Alu 3 294 -19 4372 191 30 29 chr12 53309075 53310501 -90971988 - L1MB1 LINE L1 0 6168 4744 696 168 0 46 chr12 53310501 53310632 -90971857 - FLAM_C SINE Alu -8 125 1 4372 191 30 29 chr12 53310632 53310660 -90971829 - L1MB1 LINE L1 -1424 4744 4718 2109 116 3 30 chr12 53310660 53310795 -90971694 + AluSx SINE Alu 1 138 -174 1938 128 14 4 chr12 53310795 53311076 -90971413 + AluSg SINE Alu 1 284 -26 199 0 65 0 chr12 53311076 53311107 -90971382 + (TA)n Simple_repeat Simple_repeat 2 34 0 330 26 0 0 chr12 53311109 53311148 -90971341 + (CA)n Simple_repeat Simple_repeat 2 40 0 2109 116 3 30 chr12 53311148 53311309 -90971180 + AluSx SINE Alu 138 293 -19 4372 191 30 29 chr12 53311309 53311708 -90970781 - L1MB1 LINE L1 -1450 4718 4322 724 112 9 26 chr12 53311708 53311824 -90970665 - FRAM SINE Alu -17 159 46 1714 192 34 65 chr12 53311825 53312098 -90970391 - L1MB1 LINE L1 -2542 3604 3324 1547 163 39 20 chr12 53312098 53312404 -90970085 - AluJb SINE Alu 0 312 1 1714 192 34 65 chr12 53312404 53312636 -90969853 - L1MB1 LINE L1 -2822 3324 3117 2304 107 0 0 chr12 53312636 53312935 -90969554 - AluSx SINE Alu -12 300 2 1714 192 34 65 chr12 53312935 53313012 -90969477 - L1MB1 LINE L1 -3029 3117 3039 1737 182 13 3 chr12 53313107 53313414 -90969075 - AluJb SINE Alu -2 310 1 4306 232 81 104 chr12 53313415 53314460 -90968029 + L1MC4a LINE L1 5264 6331 -1477 1873 143 27 10 chr12 53314460 53314753 -90967736 + AluJb SINE Alu 1 298 -14 4306 232 81 104 chr12 53314753 53315328 -90967161 + L1MC4a LINE L1 6331 6917 -891 2174 134 3 0 chr12 53315328 53315633 -90966856 - AluSx SINE Alu -6 306 1 4306 232 81 104 chr12 53315633 53315735 -90966754 + L1MC4a LINE L1 6917 7020 -788 711 90 10 0 chr12 53315735 53315835 -90966654 + U6 snRNA snRNA 1 101 -6 4306 232 81 104 chr12 53315835 53315866 -90966623 + L1MC4a LINE L1 7020 7050 -758 796 118 7 44 chr12 53315866 53316001 -90966488 + FLAM_C SINE Alu 4 133 0 4306 232 81 104 chr12 53316001 53316268 -90966221 + L1MC4a LINE L1 7050 7321 -487 761 161 7 36 chr12 53316268 53316405 -90966084 + FLAM_C SINE Alu 1 133 0 4306 232 81 104 chr12 53316405 53316751 -90965738 + L1MC4a LINE L1 7321 7688 -120 648 128 24 40 chr12 53316751 53316876 -90965613 + FLAM_C SINE Alu 21 143 0 2293 116 0 0 chr12 53316898 53317199 -90965290 - AluSx SINE Alu -11 301 1 251 182 26 26 chr12 53317203 53317280 -90965209 + L1MC4 LINE L1 7770 7846 -196 508 233 97 29 chr12 53317292 53317498 -90964991 + L1ME4a LINE L1 5607 5826 -295 2244 97 0 0 chr12 53317569 53317857 -90964632 + AluSg SINE Alu 1 288 -22 324 181 14 14 chr12 53318318 53318390 -90964099 - L2 LINE L2 -938 2376 2305 191 273 65 26 chr12 53318682 53318759 -90963730 + MIR SINE MIR 63 142 -66 2102 119 3 0 chr12 53321591 53321886 -90960603 + AluSg SINE Alu 1 296 -14 1161 38 8 0 chr12 53321908 53322040 -90960449 + AluY SINE Alu 2 134 -177 2183 61 11 0 chr12 53322040 53322345 -90960144 + AluY SINE Alu 1 308 0 1760 181 10 16 chr12 53322353 53322667 -90959822 + AluJo SINE Alu 1 312 0 1722 157 63 20 chr12 53323605 53323904 -90958585 - AluJo SINE Alu 0 312 1 287 299 87 31 chr12 53324041 53324168 -90958321 - MIR SINE MIR -71 191 58 728 150 0 17 chr12 53324232 53324352 -90958137 + AluJ SINE Alu 9 126 -186 901 220 52 0 chr12 53324383 53324556 -90957933 + AluJ SINE Alu 118 299 -13 374 255 149 21 chr12 53325006 53325147 -90957342 - MIR SINE MIR -12 250 92 226 280 0 0 chr12 53325386 53325436 -90957053 + L1MEd LINE L1 278 327 -5792 1602 57 0 5 chr12 53325503 53325697 -90956792 + AluY SINE Alu 1 193 -118 1225 172 64 5 chr12 53325729 53325933 -90956556 - AluJo SINE Alu -96 216 1 234 350 62 45 chr12 53326674 53326983 -90955506 + L2 LINE L2 2748 3058 -214 230 371 14 0 chr12 53326996 53327066 -90955423 + L2 LINE L2 3160 3230 -42 332 257 40 30 chr12 53327111 53327212 -90955277 - MIR SINE MIR -159 103 2 186 310 74 98 chr12 53327856 53328059 -90954430 + L2 LINE L2 3038 3235 -37 2123 129 0 7 chr12 53328186 53328488 -90954001 - AluSx SINE Alu -12 300 1 197 272 130 54 chr12 53329078 53329170 -90953319 + L2 LINE L2 3138 3236 -36 2281 110 0 3 chr12 53329172 53329480 -90953009 - AluSx SINE Alu -5 307 1 805 251 107 28 chr12 53331451 53331945 -90950544 - L1ME4a LINE L1 -47 6074 5542 1835 166 3 0 chr12 53332268 53332563 -90949926 + AluJo SINE Alu 1 296 -16 571 60 0 8 chr12 53333646 53333863 -90948626 + AluY SINE Alu 1 291 -20 288 245 157 10 chr12 53334239 53334341 -90948148 - L2 LINE L2 -4 3309 3193 306 261 8 52 chr12 53335846 53335980 -90946509 + L2 LINE L2 2936 3063 -209 2182 77 18 0 chr12 53336103 53336376 -90946113 + AluSg SINE Alu 1 278 -32 205 298 106 72 chr12 53336594 53336886 -90945603 - L2 LINE L2 -51 3221 2920 385 247 105 43 chr12 53336923 53337085 -90945404 - MIR SINE MIR -86 176 5 2105 134 7 13 chr12 53338739 53339046 -90943443 + AluSx SINE Alu 1 305 -7 1822 135 40 33 chr12 53339912 53340216 -90942273 + AluJo SINE Alu 1 306 -6 2559 55 0 13 chr12 53341107 53341417 -90941072 + AluY SINE Alu 1 306 -5 21 0 0 0 chr12 53342158 53342179 -90940310 + AT_rich Low_complexity Low_complexity 1 21 0 2245 71 0 7 chr12 53342263 53342583 -90939906 + AluY SINE Alu 1 318 0 1752 179 0 17 chr12 53342595 53342896 -90939593 + AluJo SINE Alu 3 298 -14 2192 121 14 0 chr12 53343273 53343570 -90938919 + AluSx SINE Alu 1 301 -11 2182 132 0 3 chr12 53343572 53343875 -90938614 + AluSx SINE Alu 1 302 -10 1091 184 35 10 chr12 53344797 53344998 -90937491 - MIR SINE MIR -48 214 9 671 323 23 5 chr12 53345950 53346170 -90936319 - MIR SINE MIR -37 225 2 2621 66 14 3 chr12 53346325 53346675 -90935814 + L1PA8 LINE L1 5819 6172 0 1641 148 12 4 chr12 53346699 53346943 -90935546 + AluSx SINE Alu 5 250 -62 310 194 15 60 chr12 53346948 53347015 -90935474 + AluJ/FLAM SINE Alu 1 64 -238 1779 193 3 3 chr12 53347133 53347429 -90935060 + AluJo SINE Alu 1 296 -16 353 277 164 13 chr12 53347449 53347608 -90934881 + L2 LINE L2 1913 2095 -1219 483 313 176 29 chr12 53347772 53347879 -90934610 - L2 LINE L2 -545 2769 2679 1801 125 96 4 chr12 53347879 53348151 -90934338 + AluJb SINE Alu 1 297 -15 483 313 176 29 chr12 53348151 53348519 -90933970 - L2 LINE L2 -635 2679 2224 614 129 10 0 chr12 53348739 53348840 -90933649 + HY1 scRNA scRNA 1 102 -10 2482 67 0 0 chr12 53348851 53349149 -90933340 - AluY SINE Alu -13 298 1 839 174 0 0 chr12 53349169 53349301 -90933188 + FLAM_A SINE Alu 2 133 0 329 284 126 61 chr12 53349500 53349761 -90932728 - L3 LINE CR1 -565 1012 735 2154 114 0 3 chr12 53350545 53350835 -90931654 + AluSx SINE Alu 1 289 -23 21 36 0 0 chr12 53350873 53350901 -90931588 + AT_rich Low_complexity Low_complexity 1 28 0 2113 127 3 3 chr12 53351319 53351619 -90930870 + AluSx SINE Alu 1 300 -12 222 351 15 46 chr12 53352014 53352145 -90930344 - L2 LINE L2 -159 3113 2987 203 333 0 0 chr12 53352261 53352315 -90930174 - L3 LINE CR1 -20 1557 1504 2010 135 3 0 chr12 53352977 53353259 -90929230 + AluSx SINE Alu 1 283 -29 519 31 0 0 chr12 53353260 53353325 -90929164 + (CATA)n Simple_repeat Simple_repeat 2 66 0 601 141 0 11 chr12 53353327 53353419 -90929070 + FLAM_A SINE Alu 26 116 -26 473 224 100 72 chr12 53353524 53353830 -90928659 + L1MC4a LINE L1 5701 6016 -105 1994 179 17 14 chr12 53354795 53355214 -90927275 - L1MB8 LINE L1 -11 6167 5748 1745 172 44 3 chr12 53356297 53356593 -90925896 - AluJo SINE Alu -4 308 1 393 138 0 0 chr12 53356593 53356658 -90925831 + Tigger3(Golem) DNA MER2_type 224 288 -2741 1593 171 44 27 chr12 53356660 53356953 -90925536 - AluJo SINE Alu -14 298 1 1083 228 30 13 chr12 53358047 53358284 -90924205 + MIR SINE MIR 1 241 -21 1813 138 0 70 chr12 53358321 53358628 -90923861 + AluJo SINE Alu 1 285 -27 225 0 0 0 chr12 53358628 53358653 -90923836 + (CA)n Simple_repeat Simple_repeat 2 26 0 1813 138 0 70 chr12 53358653 53358672 -90923817 + AluJo SINE Alu 285 304 -8 473 220 76 8 chr12 53358831 53358949 -90923540 - L2 LINE L2 -2 3311 3186 672 241 15 0 chr12 53359643 53359780 -90922709 - FRAM SINE Alu -45 131 1 2247 106 3 6 chr12 53360135 53360447 -90922042 - AluSx SINE Alu -1 311 1 315 247 247 18 chr12 53360542 53360708 -90921781 + MIR SINE MIR 59 262 0 23 33 0 0 chr12 53360708 53360738 -90921751 + AT_rich Low_complexity Low_complexity 1 30 0 575 170 0 0 chr12 53360745 53360831 -90921658 + AluSq SINE Alu 1 86 -227 2361 69 10 0 chr12 53360831 53361119 -90921370 + AluY SINE Alu 1 291 -20 1626 96 14 9 chr12 53361117 53361337 -90921152 + AluSq SINE Alu 73 293 -20 * 991 185 6 0 chr12 53361341 53361514 -90920975 + FAM SINE Alu 2 175 0 306 235 76 8 chr12 53361550 53361669 -90920820 + L1P5 LINE L1 5317 5443 -708 21 0 0 0 chr12 53361686 53361707 -90920782 + AT_rich Low_complexity Low_complexity 1 21 0 1687 167 14 17 chr12 53361717 53362004 -90920485 + AluJo SINE Alu 11 296 -16 21 0 0 0 chr12 53362005 53362026 -90920463 + AT_rich Low_complexity Low_complexity 1 21 0 316 325 59 35 chr12 53362302 53362505 -90919984 - MIR SINE MIR -2 260 53 238 172 35 0 chr12 53362658 53362716 -90919773 + (TA)n Simple_repeat Simple_repeat 2 61 0 2151 109 58 0 chr12 53363446 53363739 -90918750 + AluSx SINE Alu 1 310 -2 683 245 187 21 chr12 53364179 53364420 -90918069 - MLT1J LTR MaLR -209 302 22 293 134 52 134 chr12 53365091 53365188 -90917301 - HsTC2 DNA Tc2 -1809 89 1 241 282 73 9 chr12 53366113 53366223 -90916266 + L2 LINE L2 3196 3312 -1 734 241 96 21 chr12 53366282 53366564 -90915925 - L2 LINE L2 0 3313 3011 * 1207 248 128 6 chr12 53366560 53367056 -90915433 + L2 LINE L2 2757 3313 0 597 252 92 0 chr12 53367864 53368072 -90914417 + MIR SINE MIR 32 262 0 2557 46 0 20 chr12 53368115 53368417 -90914072 + AluY SINE Alu 1 296 -15 851 200 7 0 chr12 53368417 53368594 -90913895 + AluJo/FRAM SINE Alu 134 311 0 949 166 55 0 chr12 53368596 53368759 -90913730 + FAM SINE Alu 1 172 -3 372 224 168 43 chr12 53368786 53369018 -90913471 + L2 LINE L2 3053 3313 0 180 255 0 122 chr12 53369135 53369184 -90913305 + L3 LINE CR1 1489 1522 -55 2252 115 0 3 chr12 53369184 53369489 -90913000 - AluSq SINE Alu -9 304 1 180 255 0 122 chr12 53369489 53369537 -90912952 + L3 LINE CR1 1522 1574 -3 207 0 0 0 chr12 53370313 53370336 -90912153 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2217 101 7 0 chr12 53370338 53370624 -90911865 - AluSq SINE Alu -25 288 1 1232 186 54 50 chr12 53370651 53370930 -90911559 + AluJo SINE Alu 1 280 -32 2270 125 0 0 chr12 53371086 53371390 -90911099 + AluSx SINE Alu 1 304 -8 2294 98 0 3 chr12 53371391 53371688 -90910801 + AluSg SINE Alu 1 296 -14 26 0 0 0 chr12 53371866 53371892 -90910597 + AT_rich Low_complexity Low_complexity 1 26 0 725 210 0 0 chr12 53371892 53372011 -90910478 - FLAM_C SINE Alu -23 120 2 1298 178 33 108 chr12 53372556 53372888 -90909601 + AluJo SINE Alu 1 307 -5 1480 153 35 16 chr12 53373457 53373712 -90908777 + AluJb SINE Alu 36 295 -17 404 262 76 35 chr12 53373796 53373968 -90908521 - MLT1J LTR MaLR 0 511 333 316 241 67 137 chr12 53373997 53374296 -90908193 - MLT1I LTR MaLR -24 385 108 546 215 67 11 chr12 53374407 53374652 -90907837 - MLT1J LTR MaLR -218 293 1 22 0 0 0 chr12 53375092 53375114 -90907375 + AT_rich Low_complexity Low_complexity 1 22 0 292 0 0 0 chr12 53375157 53375193 -90907296 + AluYb8 SINE Alu 173 208 -100 849 69 0 0 chr12 53375193 53375323 -90907166 + AluY SINE Alu 183 312 0 300 194 15 0 chr12 53375323 53375390 -90907099 - L1MC4 LINE L1 -34 8008 7941 239 267 44 33 chr12 53375631 53375721 -90906768 - L1MC4 LINE L1 -2 8040 7950 1814 140 66 0 chr12 53375723 53376009 -90906480 - AluSx SINE Alu -7 305 1 1695 162 16 32 chr12 53376032 53376124 -90906365 - AluJb SINE Alu -3 309 217 2529 68 0 7 chr12 53376124 53376431 -90906058 - AluY SINE Alu -6 305 1 1695 162 16 32 chr12 53376431 53376652 -90905837 - AluJb SINE Alu -95 217 1 2441 80 0 0 chr12 53376661 53376962 -90905527 - AluSc SINE Alu -8 301 1 237 292 128 62 chr12 53377130 53377387 -90905102 + L2 LINE L2 3026 3299 -14 2297 94 3 0 chr12 53378324 53378611 -90903878 + AluSx SINE Alu 1 288 -24 440 192 0 0 chr12 53378614 53378687 -90903802 + AluSg/x SINE Alu 123 195 -115 396 0 0 0 chr12 53378717 53378761 -90903728 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 1367 106 16 0 chr12 53378881 53379070 -90903419 - AluSq SINE Alu -121 192 1 830 182 11 50 chr12 53379468 53379649 -90902840 + FRAM SINE Alu 1 166 -10 1214 166 170 31 chr12 53379692 53379951 -90902538 - AluJo SINE Alu -7 295 1 285 205 181 12 chr12 53380433 53380516 -90901973 + L2 LINE L2 3175 3271 -1 432 0 0 0 chr12 53381096 53381144 -90901345 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1767 101 0 0 chr12 53381169 53381396 -90901093 - AluSx SINE Alu -85 227 1 194 302 116 63 chr12 53381571 53381760 -90900729 - L3 LINE CR1 -200 1377 1179 964 166 50 17 chr12 53382421 53382602 -90899887 + AluJb SINE Alu 113 299 -13 262 329 0 13 chr12 53384074 53384150 -90898339 + MIR SINE MIR 20 94 -114 527 221 261 5 chr12 53384484 53384683 -90897806 - MIR SINE MIR -1 261 12 2151 119 0 3 chr12 53385200 53385493 -90896996 - AluSx SINE Alu -20 292 1 801 172 0 15 chr12 53385507 53385641 -90896848 - FLAM_A SINE Alu 0 133 2 1714 173 13 30 chr12 53385673 53385974 -90896515 + AluJb SINE Alu 1 296 -16 532 240 138 25 chr12 53386078 53386317 -90896172 - MIR SINE MIR -1 261 1 1762 88 130 0 chr12 53386942 53387203 -90895286 + AluSp SINE Alu 2 296 -7 277 250 56 19 chr12 53388217 53388325 -90894164 + MER5B DNA MER1_type 21 132 -46 272 93 67 80 chr12 53388484 53388559 -90893930 - Looper DNA T2_type -695 863 790 1996 154 23 0 chr12 53388560 53388865 -90893624 - AluJb SINE Alu 0 312 1 214 209 60 45 chr12 53388900 53388967 -90893522 + L2 LINE L2 2582 2649 -665 1853 135 19 38 chr12 53389160 53389529 -90892960 - AluJo SINE Alu 0 363 1 364 219 22 80 chr12 53389579 53389716 -90892773 + L2 LINE L2 2931 3059 -213 450 256 38 30 chr12 53391435 53391568 -90890921 + MIR SINE MIR 21 154 -108 2165 139 0 0 chr12 53391738 53392048 -90890441 - AluSx SINE Alu -2 310 1 207 100 0 0 chr12 53392086 53392116 -90890373 + (T)n Simple_repeat Simple_repeat 1 30 0 1569 146 23 91 chr12 53392251 53392560 -90889929 + AluJo SINE Alu 2 289 -23 1146 176 38 5 chr12 53393587 53393797 -90888692 + MER20 DNA MER1_type 1 217 -2 2218 104 16 3 chr12 53394300 53394608 -90887881 - AluSx SINE Alu 0 312 1 42 65 0 0 chr12 53396359 53396436 -90886053 + AT_rich Low_complexity Low_complexity 1 77 0 1790 131 78 7 chr12 53396449 53396732 -90885757 - AluSx SINE Alu -9 303 1 336 260 118 3 chr12 53396768 53396900 -90885589 + MIR SINE MIR 9 158 -68 2096 89 56 0 chr12 53396904 53397173 -90885316 + AluSc SINE Alu 1 284 -25 634 126 7 126 chr12 53397197 53397334 -90885155 + AluJo SINE Alu 3 122 -190 2098 107 17 3 chr12 53397334 53397624 -90884865 - AluSx SINE Alu -18 294 1 634 126 7 126 chr12 53397624 53397637 -90884852 + AluJo SINE Alu 122 135 -177 238 238 0 143 chr12 53397646 53397751 -90884738 + MIR SINE MIR 147 236 -26 329 242 180 8 chr12 53397913 53398041 -90884448 + MIR SINE MIR 2 151 -111 574 242 99 0 chr12 53399186 53399368 -90883121 + MIR SINE MIR 47 246 -16 360 328 31 73 chr12 53399692 53399979 -90882510 + L2 LINE L2 2965 3239 -33 * 495 274 127 25 chr12 53399975 53400212 -90882277 - MIR SINE MIR 0 262 2 259 370 0 0 chr12 53400828 53400920 -90881569 - L3 LINE CR1 -21 1556 1465 1981 137 16 7 chr12 53400960 53401266 -90881223 + AluJb SINE Alu 1 309 -3 185 327 184 6 chr12 53401268 53401436 -90881053 - L3 LINE CR1 -226 1351 1154 2338 99 3 0 chr12 53401458 53401752 -90880737 + AluSq SINE Alu 1 295 -18 2265 80 31 0 chr12 53401935 53402221 -90880268 - AluSg SINE Alu -11 299 5 696 132 0 35 chr12 53402412 53402526 -90879963 + HY1 scRNA scRNA 1 110 -2 2268 103 0 0 chr12 53402855 53403146 -90879343 - AluSx SINE Alu -21 291 1 23 33 0 0 chr12 53403226 53403256 -90879233 + AT_rich Low_complexity Low_complexity 1 30 0 1426 144 58 26 chr12 53405775 53406087 -90876402 - MER33 DNA MER1_type -2 322 1 2151 114 10 10 chr12 53407762 53408061 -90874428 - AluSx SINE Alu -13 299 1 1481 178 10 109 chr12 53408538 53408943 -90873546 + MLT1A1 LTR MaLR 1 365 0 362 332 25 25 chr12 53408959 53409155 -90873334 - L2 LINE L2 -455 2859 2664 975 166 12 6 chr12 53409157 53409326 -90873163 + FRAM SINE Alu 1 170 -6 486 311 209 39 chr12 53409333 53409406 -90873083 - L2 LINE L2 -641 2673 2614 1069 193 70 94 chr12 53409406 53409780 -90872709 + MLT1A1 LTR MaLR 1 365 0 486 311 209 39 chr12 53409780 53409864 -90872625 - L2 LINE L2 -700 2614 2546 2404 97 0 10 chr12 53409864 53410173 -90872316 + AluSx SINE Alu 1 306 -6 486 311 209 39 chr12 53410173 53410540 -90871949 - L2 LINE L2 -768 2546 2243 2206 100 3 0 chr12 53410540 53410831 -90871658 + AluSx SINE Alu 1 292 -20 486 311 209 39 chr12 53410831 53411274 -90871215 - L2 LINE L2 -1071 2243 1539 335 256 109 24 chr12 53411504 53411715 -90870774 + L1M4 LINE L1 2981 3209 -2937 1516 185 38 11 chr12 53412100 53412387 -90870102 + AluJo SINE Alu 1 295 -17 380 107 36 0 chr12 53412393 53412449 -90870040 - MLT1G LTR MaLR 0 590 533 331 319 43 50 chr12 53412451 53412589 -90869900 - L1M4 LINE L1 -2030 4116 3979 2204 118 0 10 chr12 53412589 53412895 -90869594 + AluSq SINE Alu 1 303 -10 2543 50 0 13 chr12 53412895 53413198 -90869291 + AluY SINE Alu 1 299 -12 2166 102 7 3 chr12 53413207 53413502 -90868987 + AluSx SINE Alu 1 296 -16 331 319 43 50 chr12 53413502 53413631 -90868858 - L1M4 LINE L1 -2174 3972 3840 313 267 112 9 chr12 53413760 53413876 -90868613 + MLT1G LTR MaLR 8 135 -460 * 488 285 65 18 chr12 53413866 53414085 -90868404 + MLT1G LTR MaLR 100 358 -219 860 86 60 0 chr12 53414122 53414238 -90868251 - AluSq SINE Alu -130 183 61 1357 215 64 45 chr12 53414239 53414754 -90867735 + L1MDa LINE L1 1394 2238 -4303 1011 105 0 0 chr12 53414754 53414887 -90867602 + FLAM_C SINE Alu 1 133 0 1342 234 66 13 chr12 53414916 53415144 -90867345 + L1M4 LINE L1 3998 4257 -1889 1314 111 103 0 chr12 53415144 53415378 -90867111 + L1MA1 LINE L1 6041 6298 -4 1342 234 66 13 chr12 53415378 53415542 -90866947 + L1M4 LINE L1 4257 4411 -1735 1006 125 13 7 chr12 53415542 53415694 -90866795 + MER47A DNA MER2_type 4 156 -210 362 113 0 16 chr12 53415795 53415857 -90866632 + (TCCC)n Simple_repeat Simple_repeat 3 63 0 2360 71 4 0 chr12 53415859 53416139 -90866350 - AluSp SINE Alu -32 281 1 1146 176 38 5 chr12 53416801 53417011 -90865478 - MER20 DNA MER1_type -2 217 1 1505 142 26 94 chr12 53418038 53418347 -90864142 - AluJo SINE Alu -23 289 2 228 67 0 0 chr12 53418482 53418512 -90863977 + (A)n Simple_repeat Simple_repeat 1 30 0 2264 126 0 0 chr12 53418548 53418858 -90863631 + AluSx SINE Alu 1 310 -2 450 256 38 30 chr12 53419028 53419161 -90863328 - MIR SINE MIR -108 154 21 364 219 22 80 chr12 53420880 53421017 -90861472 - L2 LINE L2 -213 3059 2931 1854 135 19 38 chr12 53421067 53421436 -90861053 + AluJo SINE Alu 1 363 0 214 209 60 45 chr12 53421629 53421696 -90860793 - L2 LINE L2 -665 2649 2582 1996 154 23 0 chr12 53421731 53422036 -90860453 + AluJb SINE Alu 1 312 0 272 93 67 80 chr12 53422037 53422112 -90860377 + Looper DNA T2_type 790 863 -695 277 250 56 19 chr12 53422271 53422379 -90860110 - MER5B DNA MER1_type -46 132 21 1762 88 130 0 chr12 53423393 53423654 -90858835 - AluSp SINE Alu -7 296 2 532 240 138 25 chr12 53424279 53424518 -90857971 + MIR SINE MIR 1 261 -1 1714 173 13 30 chr12 53424622 53424923 -90857566 - AluJb SINE Alu -16 296 1 801 172 0 15 chr12 53424955 53425089 -90857400 + FLAM_A SINE Alu 2 133 0 2151 119 0 3 chr12 53425103 53425396 -90857093 + AluSx SINE Alu 1 292 -20 527 221 261 5 chr12 53425913 53426112 -90856377 + MIR SINE MIR 12 261 -1 270 316 0 13 chr12 53426446 53426522 -90855967 - MIR SINE MIR -114 94 20 887 156 58 7 chr12 53427994 53428148 -90854341 - AluJb SINE Alu -13 299 138 2191 114 7 0 chr12 53428251 53428550 -90853939 - AluSx SINE Alu -11 301 1 2074 108 10 3 chr12 53429213 53429510 -90852979 - AluSp SINE Alu -10 303 5 2430 75 0 3 chr12 53429885 53430177 -90852312 - AluY SINE Alu -20 291 1 3937 217 86 64 chr12 53430554 53430682 -90851807 + L1MDb LINE L1 783 907 -5499 1830 165 4 0 chr12 53430682 53430955 -90851534 + AluJo SINE Alu 12 285 -27 3937 217 86 64 chr12 53430955 53432036 -90850453 + L1MDb LINE L1 907 1963 -4443 2198 145 18 6 chr12 53432036 53432368 -90850121 + MER1B DNA MER1_type 2 337 0 3937 217 86 64 chr12 53432368 53432386 -90850103 + L1MDb LINE L1 1963 1979 -4427 2188 90 21 4 chr12 53432386 53432665 -90849824 + AluSx SINE Alu 1 284 -28 3937 217 86 64 chr12 53432665 53433086 -90849403 + L1MDb LINE L1 1979 2443 -3963 2364 192 92 68 chr12 53433091 53433812 -90848677 + L1MB8 LINE L1 3692 4394 -1752 2171 114 3 0 chr12 53433812 53434102 -90848387 + AluSq SINE Alu 1 291 -22 2364 192 92 68 chr12 53434102 53434159 -90848330 + L1MB8 LINE L1 4394 4448 -1698 2224 122 0 3 chr12 53434159 53434463 -90848026 + AluSg SINE Alu 1 303 -7 2364 192 92 68 chr12 53434463 53434517 -90847972 + L1MB8 LINE L1 4448 4545 -1601 4213 152 39 41 chr12 53434520 53434547 -90847942 + L1MB8 LINE L1 5309 5335 -843 2229 96 3 26 chr12 53434547 53434849 -90847640 + AluSq SINE Alu 1 295 -18 4213 152 39 41 chr12 53434849 53435677 -90846812 + L1MB8 LINE L1 5335 6162 -16 870 240 126 30 chr12 53435692 53435971 -90846518 + L1MDb LINE L1 2436 2766 -3640 1343 164 141 0 chr12 53435971 53436227 -90846262 + AluJo SINE Alu 1 292 -10 870 240 126 30 chr12 53436227 53436343 -90846146 + L1MDb LINE L1 2766 2869 -3537 1923 132 7 10 chr12 53436379 53436667 -90845822 - AluSg SINE Alu -11 299 13 969 189 134 7 chr12 53436857 53437132 -90845357 + Charlie1 DNA MER1_type 2448 2757 -4 2287 108 0 0 chr12 53437451 53437748 -90844741 + AluSg1 SINE Alu 1 297 -12 1818 150 31 7 chr12 53437749 53438043 -90844446 + AluJb SINE Alu 1 301 -11 1237 280 124 27 chr12 53438084 53438734 -90843755 - L2 LINE L2 -61 3252 2666 244 0 56 0 chr12 53438734 53438770 -90843719 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1252 41 0 0 chr12 53438770 53438916 -90843573 - L1PA3 LINE L1 -10 6145 6000 1237 280 124 27 chr12 53438916 53439000 -90843489 - L2 LINE L2 -646 2667 2416 711 155 0 39 chr12 53439005 53439134 -90843355 + FLAM_A SINE Alu 2 125 -8 510 17 0 0 chr12 53439144 53439203 -90843286 + (CA)n Simple_repeat Simple_repeat 2 60 0 2596 193 36 71 chr12 53439328 53439934 -90842555 - MLT1E LTR MaLR 0 593 9 578 244 0 0 chr12 53439943 53440066 -90842423 - L2 LINE L2 -996 2318 2196 629 255 88 29 chr12 53440187 53440426 -90842063 + L1MCc LINE L1 216 468 -5955 2753 205 61 41 chr12 53440597 53441319 -90841170 + L1MCc LINE L1 832 1583 -5048 1726 165 0 30 chr12 53441319 53441616 -90840873 + AluJo SINE Alu 6 293 -19 2753 205 61 41 chr12 53441616 53441782 -90840707 + L1MCc LINE L1 1583 1744 -4887 468 265 225 8 chr12 53441786 53442039 -90840450 - L2 LINE L2 -1084 2230 1923 1817 171 0 10 chr12 53442051 53442349 -90840140 - AluJo SINE Alu -17 295 1 644 226 15 0 chr12 53442352 53442485 -90840004 - FRAM SINE Alu -16 160 26 851 262 45 5 chr12 53442488 53442690 -90839799 - MER82 DNA MER2_type -7 646 437 2289 84 0 32 chr12 53443117 53443425 -90839064 - AluSg SINE Alu -12 298 1 21 0 0 0 chr12 53444838 53444859 -90837630 + AT_rich Low_complexity Low_complexity 1 21 0 254 303 17 50 chr12 53444964 53445083 -90837406 + L2 LINE L2 3001 3115 -157 2293 94 10 0 chr12 53445197 53445495 -90836994 - AluSx SINE Alu -11 301 1 1313 212 156 60 chr12 53445625 53446228 -90836261 + MER67D LTR ERV1 1 514 0 1626 159 48 24 chr12 53446276 53446571 -90835918 + AluJb SINE Alu 1 302 -10 1960 103 33 0 chr12 53447015 53447287 -90835202 - AluSx SINE Alu -31 281 1 1858 120 75 24 chr12 53447405 53447697 -90834792 + AluSx SINE Alu 1 307 -5 1329 168 47 33 chr12 53447698 53447972 -90834517 + MER82 DNA MER2_type 188 465 -188 1262 190 57 57 chr12 53448220 53448409 -90834080 - AluJo SINE Alu -1 311 120 2499 63 0 13 chr12 53448409 53448711 -90833778 - AluY SINE Alu -13 298 1 1262 190 57 57 chr12 53448711 53448821 -90833668 - AluJo SINE Alu -191 121 12 941 143 8 151 chr12 53449129 53449367 -90833122 + AluJo SINE Alu 85 288 -24 664 167 0 45 chr12 53449510 53449642 -90832847 + FLAM_A SINE Alu 13 138 -4 2447 68 10 0 chr12 53449698 53450006 -90832483 + AluY SINE Alu 1 311 0 2319 103 0 10 chr12 53450408 53450719 -90831770 + AluSp SINE Alu 1 308 -5 518 105 0 35 chr12 53450770 53450856 -90831633 + L1P4 LINE L1 5391 5473 -695 1751 172 0 23 chr12 53451256 53451558 -90830931 + AluJb SINE Alu 1 295 -17 3822 168 56 42 chr12 53451656 53451701 -90830788 - L1MB2 LINE L1 0 6171 6128 1619 165 75 0 chr12 53451701 53451980 -90830509 - AluJo SINE Alu -12 300 1 2395 87 3 0 chr12 53451989 53452287 -90830202 - AluSc SINE Alu -10 299 1 3822 168 56 42 chr12 53452287 53452361 -90830128 - L1MB2 LINE L1 -50 6121 6049 1669 141 53 14 chr12 53452361 53452645 -90829844 - AluSx SINE Alu -17 295 1 3822 168 56 42 chr12 53452645 53453322 -90829167 - L1MB2 LINE L1 -122 6049 5353 407 271 230 26 chr12 53453623 53453797 -90828692 - L3 LINE CR1 -42 1535 1398 1836 154 20 7 chr12 53453797 53454095 -90828394 - AluJb SINE Alu -2 310 9 407 271 230 26 chr12 53454095 53454259 -90828230 - L3 LINE CR1 -179 1398 1128 204 315 34 34 chr12 53454271 53454360 -90828129 + L3 LINE CR1 968 1056 -521 281 256 98 53 chr12 53454378 53454511 -90827978 - MER5A DNA MER1_type -1 188 50 2233 101 10 3 chr12 53455054 53455361 -90827128 - AluSq SINE Alu -4 309 1 2101 129 0 19 chr12 53455647 53455956 -90826533 - AluJb SINE Alu -9 303 1 320 236 50 39 chr12 53455957 53456059 -90826430 - L1 LINE L1 -3316 2830 2728 1961 92 4 0 chr12 53456177 53456428 -90826061 + AluSg SINE Alu 43 294 -16 2110 132 3 6 chr12 53456543 53456854 -90825635 + AluSx SINE Alu 1 310 -2 2251 109 7 0 chr12 53457066 53457369 -90825120 + AluSx SINE Alu 5 309 -3 1425 199 16 16 chr12 53457737 53458049 -90824440 - L1MB2 LINE L1 -884 5262 4951 2470 84 0 0 chr12 53458052 53458349 -90824140 - AluSx SINE Alu -15 297 1 1648 169 14 7 chr12 53458364 53458642 -90823847 - AluJo SINE Alu -20 292 13 1563 247 54 24 chr12 53459131 53459682 -90822807 + L1MD1 LINE L1 5673 6240 -2 353 325 35 39 chr12 53459779 53460034 -90822455 + L1MEd LINE L1 457 710 -5409 26 64 0 0 chr12 53460034 53460081 -90822408 + AT_rich Low_complexity Low_complexity 1 47 0 458 220 105 10 chr12 53460123 53460323 -90822166 + L1MEd LINE L1 660 878 -5241 2466 35 3 0 chr12 53460330 53460635 -90821854 - AluY SINE Alu 0 306 1 356 89 0 0 chr12 53460756 53460812 -90821677 - AluSp/q SINE Alu -2 301 246 262 167 42 56 chr12 53460815 53460887 -90821602 + L1M4 LINE L1 4487 4557 -1589 2114 98 39 3 chr12 53460893 53461179 -90821310 + AluSx SINE Alu 2 297 -15 210 71 0 0 chr12 53461179 53461207 -90821282 + (TA)n Simple_repeat Simple_repeat 2 29 0 1777 190 14 0 chr12 53462144 53462439 -90820050 - AluJb SINE Alu -13 299 1 1487 201 25 14 chr12 53462652 53463005 -90819484 - L1ME1 LINE L1 0 6166 5810 1496 203 47 11 chr12 53463028 53463393 -90819096 - L1ME1 LINE L1 -4 6162 5785 972 122 24 24 chr12 53463394 53463558 -90818931 + MSTA LTR MaLR 1 164 -262 1767 183 0 3 chr12 53463575 53463864 -90818625 + AluJo SINE Alu 1 288 -24 12833 229 25 14 chr12 53463979 53465692 -90816797 + L1PA15 LINE L1 1266 2958 -3839 2027 141 14 0 chr12 53465692 53465983 -90816506 - AluSg SINE Alu -15 295 1 12833 229 25 14 chr12 53465983 53468438 -90814051 + L1PA15 LINE L1 2958 5488 -1309 5673 125 22 3 chr12 53468439 53469493 -90812996 + L1PA15 LINE L1 5731 6811 -5 1243 153 42 4 chr12 53469501 53469737 -90812752 + MSTA LTR MaLR 184 428 0 603 200 117 6 chr12 53469737 53469917 -90812572 - L1ME1 LINE L1 -2251 5791 5592 2011 148 0 19 chr12 53469950 53470268 -90812221 - AluJb SINE Alu 0 312 1 343 263 184 14 chr12 53470272 53470489 -90812000 - L1ME4a LINE L1 -25 6096 5843 495 244 22 7 chr12 53470538 53470673 -90811816 - L1ME4a LINE L1 -414 5707 5571 198 0 0 0 chr12 53470928 53470950 -90811539 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 2328 72 0 44 chr12 53471047 53471420 -90811069 - AluY SINE Alu 0 311 1 573 208 147 15 chr12 53471476 53471673 -90810816 - L1MC5 LINE L1 -51 7910 7688 276 296 15 15 chr12 53471679 53471814 -90810675 - L1ME4a LINE L1 -1130 5016 4882 465 204 11 0 chr12 53472405 53472498 -90809991 + MER7A DNA MER2_type 1 92 -254 2329 98 0 0 chr12 53472498 53472793 -90809696 - AluSx SINE Alu -16 296 2 1052 121 0 0 chr12 53472796 53472936 -90809553 - AluSq/x SINE Alu -173 140 1 1230 165 86 4 chr12 53472936 53473179 -90809310 + MER7A DNA MER2_type 74 336 0 1423 133 12 127 chr12 53473701 53473898 -90808591 - AluJo SINE Alu -10 292 147 1851 168 0 10 chr12 53473898 53474189 -90808300 - AluJo SINE Alu -24 288 1 1423 133 12 127 chr12 53474189 53474321 -90808168 - AluJo SINE Alu -155 147 1 262 301 18 18 chr12 53474329 53474442 -90808047 - MIR SINE MIR -54 208 96 286 279 54 36 chr12 53474716 53474827 -90807662 + MIR SINE MIR 2 114 -148 378 365 96 4 chr12 53474854 53475084 -90807405 - MIR SINE MIR -6 256 6 2235 85 3 7 chr12 53475093 53475387 -90807102 - AluSc SINE Alu -16 293 1 269 217 72 0 chr12 53475414 53475483 -90807006 + MIR SINE MIR 121 194 -68 1971 157 0 3 chr12 53475808 53476102 -90806387 - AluSx SINE Alu -16 296 4 467 202 32 123 chr12 53476123 53476201 -90806288 + L1M4 LINE L1 2241 2325 -3821 1525 169 85 0 chr12 53476201 53476461 -90806028 + AluJo SINE Alu 13 294 -18 467 202 32 123 chr12 53476461 53476634 -90805855 + L1M4 LINE L1 2325 2469 -3677 937 184 33 41 chr12 53476640 53476884 -90805605 + L1MD2 LINE L1 5586 5827 -532 617 213 8 0 chr12 53477061 53477183 -90805306 - AluSq/x SINE Alu -189 123 1 625 250 49 59 chr12 53477225 53477572 -90804917 - L1MEc LINE L1 -3770 2448 2134 807 188 0 0 chr12 53478156 53478289 -90804200 + FLAM_C SINE Alu 1 133 0 359 254 97 35 chr12 53478482 53478596 -90803893 + MIR SINE MIR 4 124 -138 2289 147 35 8 chr12 53478630 53479024 -90803465 + MER47B DNA MER2_type 7 411 -7 2124 87 32 0 chr12 53479024 53479335 -90803154 + AluSq SINE Alu 1 320 0 185 214 107 18 chr12 53479409 53479465 -90803024 - L2 LINE L2 -54 3259 3199 234 312 117 0 chr12 53479631 53479708 -90802781 + L2 LINE L2 3228 3313 0 1810 118 81 0 chr12 53479926 53480198 -90802291 + AluSx SINE Alu 1 294 -18 418 77 91 0 chr12 53480198 53480424 -90802065 + (TA)n Simple_repeat Simple_repeat 1 246 0 2022 125 3 23 chr12 53480578 53480881 -90801608 + AluSx SINE Alu 4 300 -12 2224 104 13 0 chr12 53481040 53481347 -90801142 + AluSx SINE Alu 1 311 -1 1764 167 3 0 chr12 53481578 53481865 -90800624 - AluJb SINE Alu -24 288 1 22 0 0 0 chr12 53483279 53483301 -90799188 + AT_rich Low_complexity Low_complexity 1 22 0 1645 208 118 11 chr12 53484385 53484879 -90797610 - L1ME2 LINE L1 -10 6154 5609 2214 116 13 0 chr12 53485016 53485317 -90797172 + AluSx SINE Alu 1 305 -7 1388 159 144 0 chr12 53485485 53485756 -90796733 - AluJo SINE Alu -2 310 1 310 230 14 0 chr12 53485923 53485997 -90796492 - L1ME2 LINE L1 -2194 5591 5517 390 276 117 6 chr12 53486469 53486632 -90795857 - L1ME3A LINE L1 -230 5940 5760 725 290 118 16 chr12 53486663 53487035 -90795454 - L1ME3A LINE L1 -397 5773 5364 1285 161 128 22 chr12 53487038 53487312 -90795177 - AluSg1 SINE Alu -6 303 1 547 154 51 17 chr12 53487319 53487436 -90795053 - L1MA4A LINE L1 -3 6300 6180 1793 146 187 33 chr12 53487436 53487580 -90794909 - L1MA4 LINE L1 -184 6116 5996 1867 138 55 0 chr12 53487580 53487870 -90794619 - AluJb SINE Alu -6 306 1 1793 146 187 33 chr12 53487870 53488212 -90794277 - L1MA4 LINE L1 -304 5996 5555 1794 161 7 24 chr12 53488232 53488530 -90793959 + AluJb SINE Alu 1 293 -19 2831 119 54 53 chr12 53488550 53488790 -90793699 - Tigger3b DNA MER2_type -2457 571 333 2174 82 43 4 chr12 53488790 53489071 -90793418 - AluY SINE Alu -19 292 1 2831 119 54 53 chr12 53489071 53489400 -90793089 - Tigger3b DNA MER2_type -2695 333 1 2285 115 0 0 chr12 53490086 53490391 -90792098 - AluSx SINE Alu -7 305 1 22 35 0 0 chr12 53490462 53490491 -90791998 + AT_rich Low_complexity Low_complexity 1 29 0 1688 167 32 3 chr12 53491091 53491373 -90791116 - AluJo SINE Alu -22 290 1 206 250 0 0 chr12 53491434 53491486 -90791003 + (TA)n Simple_repeat Simple_repeat 1 52 0 309 151 0 0 chr12 53491610 53491663 -90790826 + MADE1 DNA Mariner 28 80 0 899 157 68 21 chr12 53491799 53491990 -90790499 - MER3 DNA MER1_type 0 209 10 1321 210 25 45 chr12 53492107 53492421 -90790068 - AluJo SINE Alu -4 308 1 1193 260 131 53 chr12 53492460 53493187 -90789302 - L2 LINE L2 0 3313 2529 439 234 102 18 chr12 53493214 53493381 -90789108 + L1ME1 LINE L1 5981 6161 -5 2302 103 0 10 chr12 53493402 53493703 -90788786 + AluSx SINE Alu 1 298 -14 2200 96 4 0 chr12 53493790 53494103 -90788386 + AluSq SINE Alu 1 314 0 223 245 191 11 chr12 53494119 53494213 -90788276 + MIR SINE MIR 117 227 -35 1949 168 0 0 chr12 53494527 53494831 -90787658 - AluSx SINE Alu -8 304 1 465 183 0 0 chr12 53494885 53494967 -90787522 + AluSg1 SINE Alu 1 82 -227 1132 143 11 6 chr12 53495084 53495266 -90787223 + AluSq SINE Alu 118 300 -13 773 233 44 30 chr12 53495266 53495537 -90786952 + L1MEd LINE L1 952 1226 -4893 310 317 35 35 chr12 53495589 53495731 -90786758 + HAL1 LINE L1 1395 1536 -971 336 145 40 40 chr12 53495735 53495811 -90786678 + MSTA LTR MaLR 221 296 -132 225 163 0 0 chr12 53495862 53495905 -90786584 + L1PB1 LINE L1 6 48 -6815 646 249 10 5 chr12 53495944 53496137 -90786352 + L1PB1 LINE L1 6 199 -6664 * 13388 192 16 37 chr12 53496134 53499706 -90782783 + L1PB1 LINE L1 652 4458 -2409 2124 101 0 0 chr12 53499715 53499992 -90782497 + AluSx SINE Alu 1 277 -35 934 100 0 31 chr12 53499992 53500151 -90782338 + AluSg/x SINE Alu 169 325 0 13388 192 16 37 chr12 53500151 53502147 -90780342 + L1PB1 LINE L1 4458 6496 -371 2882 6 0 0 chr12 53502149 53502460 -90780029 + AluYb8 SINE Alu 1 311 -7 309 212 0 81 chr12 53502474 53502573 -90779916 + L1MC4 LINE L1 6613 6703 -1339 309 208 0 28 chr12 53502577 53502683 -90779806 + (TA)n Simple_repeat Simple_repeat 1 103 0 551 237 6 18 chr12 53502772 53502941 -90779548 + L1PB1 LINE L1 6492 6658 -209 705 213 5 11 chr12 53503043 53503231 -90779258 + L1PB3 LINE L1 4763 4949 -1197 2060 100 27 110 chr12 53503237 53503646 -90778843 + THE1C LTR MaLR 1 375 0 10629 105 10 42 chr12 53503646 53505278 -90777211 + THE1C-int LTR MaLR 1 1580 0 1994 133 14 23 chr12 53505283 53505638 -90776851 + THE1C LTR MaLR 2 437 -20 4401 158 17 39 chr12 53505714 53506429 -90776060 + L1PB3 LINE L1 4955 5632 -522 288 0 0 0 chr12 53506429 53506461 -90776028 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4401 158 17 39 chr12 53506461 53506971 -90775518 + L1PB3 LINE L1 5632 6152 -2 1861 151 0 30 chr12 53507075 53507380 -90775109 - AluJo SINE Alu -16 296 1 724 155 81 1 chr12 53507672 53507815 -90774674 + LTR47A LTR ERVL 288 452 0 355 295 32 0 chr12 53507862 53507957 -90774532 + L2 LINE L2 3196 3293 -20 394 205 32 108 chr12 53507973 53508158 -90774331 + L1ME3A LINE L1 5317 5487 -2321 2202 120 0 0 chr12 53508207 53508508 -90773981 + AluSx SINE Alu 1 301 -11 273 221 0 0 chr12 53508560 53508628 -90773861 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 1913 158 0 14 chr12 53508638 53508930 -90773559 - AluJo SINE Alu -24 288 1 479 265 129 56 chr12 53508940 53509290 -90773199 + L1ME3A LINE L1 5550 5934 -236 1947 188 133 13 chr12 53509290 53509748 -90772741 + MLT2B2 LTR ERVL 1 513 -2 895 198 68 0 chr12 53509790 53509982 -90772507 + MER3 DNA MER1_type 1 205 -4 1690 146 23 43 chr12 53510469 53510771 -90771718 + AluSx SINE Alu 6 301 -11 777 164 31 0 chr12 53510926 53511054 -90771435 + FLAM_C SINE Alu 1 132 -1 1541 247 50 33 chr12 53511179 53511728 -90770761 - MLT1F1 LTR MaLR -8 559 1 216 243 43 14 chr12 53511732 53511802 -90770687 - L2 LINE L2 -1635 1679 1608 1734 163 22 0 chr12 53511850 53512127 -90770362 - 7SLRNA srpRNA srpRNA -4 316 34 2028 140 62 3 chr12 53512854 53513212 -90769277 - MER31A LTR ERV1 0 485 107 183 296 0 0 chr12 53513745 53513789 -90768700 - MIR SINE MIR -110 152 109 24 0 0 0 chr12 53513946 53513970 -90768519 + AT_rich Low_complexity Low_complexity 1 24 0 1316 32 6 26 chr12 53514572 53514728 -90767761 - L1PA7 LINE L1 -8 6146 5994 2129 128 3 3 chr12 53514736 53515040 -90767449 - AluSq SINE Alu -6 307 4 910 195 174 60 chr12 53515059 53515277 -90767212 - MER58B DNA MER1_type -2080 340 81 805 167 0 24 chr12 53515277 53515403 -90767086 + FLAM_C SINE Alu 5 127 -6 910 195 174 60 chr12 53515403 53515466 -90767023 - MER58B DNA MER1_type -2339 81 27 476 270 178 15 chr12 53515475 53515745 -90766744 + L2 LINE L2 1773 2086 -1228 4026 166 4 35 chr12 53516181 53516942 -90765547 - L1M3 LINE L1 -702 5478 4757 1776 182 13 3 chr12 53516942 53517244 -90765245 - AluJb SINE Alu -7 305 1 4026 166 4 35 chr12 53517244 53517419 -90765070 - L1M3 LINE L1 -1423 4757 4578 2511 34 10 0 chr12 53517424 53517722 -90764767 - AluY SINE Alu -10 301 1 358 89 0 0 chr12 53517843 53517899 -90764590 - AluSp/q SINE Alu -2 301 246 255 171 43 57 chr12 53517905 53517975 -90764514 + L1M4 LINE L1 4489 4557 -1589 2096 98 39 3 chr12 53517981 53518267 -90764222 + AluSx SINE Alu 2 297 -15 210 71 0 0 chr12 53518267 53518295 -90764194 + (TA)n Simple_repeat Simple_repeat 2 29 0 1746 186 14 0 chr12 53519229 53519524 -90762965 - AluJo SINE Alu -13 299 1 1574 208 17 28 chr12 53519737 53520097 -90762392 - L1ME1 LINE L1 0 6166 5811 921 235 52 28 chr12 53520121 53520410 -90762079 - L1ME1 LINE L1 -4 6162 5867 4376 209 58 58 chr12 53520511 53520978 -90761511 - L1 LINE L1 -937 5209 4743 2109 116 10 3 chr12 53520978 53521272 -90761217 - AluSx SINE Alu -12 300 5 4376 209 58 58 chr12 53521272 53522492 -90759997 - L1 LINE L1 -1403 4743 3397 747 169 130 77 chr12 53522656 53522863 -90759626 - MER20 DNA MER1_type -1 218 1 383 256 126 20 chr12 53522873 53523127 -90759362 - L1MEc LINE L1 -893 1683 1536 2183 120 3 6 chr12 53523135 53523452 -90759037 - L1PB1 LINE L1 0 6151 5836 591 303 45 28 chr12 53523572 53523862 -90758627 + L1MD1 LINE L1 5946 6240 -2 372 325 35 39 chr12 53523959 53524214 -90758275 + L1MEd LINE L1 457 710 -5409 26 64 0 0 chr12 53524214 53524261 -90758228 + AT_rich Low_complexity Low_complexity 1 47 0 506 259 73 63 chr12 53524303 53524510 -90757979 + L1MEd LINE L1 660 873 -5246 2303 63 3 7 chr12 53524510 53524817 -90757672 - AluY SINE Alu 0 306 1 506 259 73 63 chr12 53524817 53524909 -90757580 + L1MEd LINE L1 873 963 -5156 681 190 44 0 chr12 53524909 53525046 -90757443 + AluSq/x SINE Alu 2 144 -168 692 184 0 0 chr12 53525147 53525256 -90757233 + AluSg/x SINE Alu 192 300 -9 848 178 7 13 chr12 53525854 53526006 -90756483 + AluJb SINE Alu 1 151 -161 551 143 39 110 chr12 53526007 53526161 -90756328 + AluJo SINE Alu 32 174 -138 1634 186 3 20 chr12 53526349 53526650 -90755839 - AluJb SINE Alu -16 296 1 678 124 21 0 chr12 53527059 53527156 -90755333 + HY3 scRNA scRNA 1 99 -2 213 227 67 27 chr12 53527344 53527419 -90755070 - MIR SINE MIR -50 212 135 2013 158 0 0 chr12 53527638 53527942 -90754547 + AluSx SINE Alu 1 304 -8 4107 192 110 88 chr12 53528427 53529790 -90752699 + MER52A LTR ERV1 1 1474 -281 265 289 7 72 chr12 53529800 53529952 -90752537 + MER52A LTR ERV1 1607 1748 -7 194 300 0 0 chr12 53529982 53530032 -90752457 - L2 LINE L2 -4 3268 3219 180 303 40 40 chr12 53530305 53530404 -90752085 - L2 LINE L2 -1076 2238 2140 282 306 139 23 chr12 53530483 53530656 -90751833 + MIR SINE MIR 5 197 -65 872 148 0 8 chr12 53530675 53530803 -90751686 + FLAM_C SINE Alu 1 127 -16 2358 90 0 3 chr12 53530909 53531208 -90751281 - AluSq SINE Alu -14 299 2 1927 165 0 0 chr12 53531296 53531599 -90750890 + AluJb SINE Alu 1 303 -9 487 346 184 26 chr12 53532285 53532632 -90749857 + L2 LINE L2 2866 3267 -5 410 271 193 6 chr12 53532638 53532804 -90749685 - MIR SINE MIR -43 219 23 2266 103 37 17 chr12 53533081 53533430 -90749059 - LTR45B LTR ERV1 -131 358 3 534 268 33 7 chr12 53533556 53533709 -90748780 + MLT1K LTR MaLR 432 588 0 183 290 140 40 chr12 53533888 53533988 -90748501 + MIR SINE MIR 35 144 -64 805 172 0 0 chr12 53535220 53535336 -90747153 + FLAM_C SINE Alu 1 116 -17 2138 93 23 35 chr12 53535347 53535657 -90746832 - AluSg SINE Alu -4 306 1 380 179 0 71 chr12 53535893 53535977 -90746512 + LTR19C LTR ERV1 615 692 -87 2126 110 7 3 chr12 53536203 53536502 -90745987 + AluSp SINE Alu 1 300 -13 2194 102 7 20 chr12 53536507 53536810 -90745679 + AluSq SINE Alu 1 299 -14 1983 140 10 0 chr12 53537837 53538129 -90744360 - AluJb SINE Alu -17 295 1 506 276 69 37 chr12 53538154 53538400 -90744089 - L2 LINE L2 -909 2405 2152 1642 161 80 5 chr12 53538404 53538820 -90743669 + MER61D LTR ERV1 1 501 0 2043 124 3 3 chr12 53538960 53539250 -90743239 + AluSx SINE Alu 1 290 -22 425 237 127 0 chr12 53539285 53539403 -90743086 + MIR SINE MIR 75 207 -55 189 216 59 0 chr12 53539500 53539551 -90742938 + MIR SINE MIR 133 186 -76 1973 141 3 26 chr12 53539758 53540062 -90742427 + AluJb SINE Alu 1 297 -15 532 298 76 52 chr12 53540249 53540655 -90741834 - L1MC4a LINE L1 -1753 6055 5640 1779 132 80 0 chr12 53541036 53541325 -90741164 - AluSx SINE Alu 0 312 1 238 357 116 0 chr12 53541543 53541655 -90740834 - L2 LINE L2 0 3313 3189 185 214 107 18 chr12 53541790 53541846 -90740643 + L2 LINE L2 3199 3259 -54 201 94 0 0 chr12 53541920 53541952 -90740537 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2133 87 32 0 chr12 53541954 53542231 -90740258 - AluSq SINE Alu -27 286 1 2474 147 35 8 chr12 53542231 53542625 -90739864 - MER47B DNA MER2_type -7 411 7 355 254 97 35 chr12 53542659 53542773 -90739716 - MIR SINE MIR -138 124 4 874 181 0 0 chr12 53542966 53543099 -90739390 - FLAM_C SINE Alu 0 133 1 938 276 82 55 chr12 53543683 53544072 -90738417 + L1MEc LINE L1 2134 2511 -3704 1984 117 15 62 chr12 53544072 53544397 -90738092 + AluSq SINE Alu 1 310 -3 938 276 82 55 chr12 53544397 53544613 -90737876 + L1MEc LINE L1 2511 2732 -3483 776 204 23 6 chr12 53544613 53544785 -90737704 - MER104 DNA MER2_type -4 176 2 938 276 82 55 chr12 53544785 53544910 -90737579 + L1MEc LINE L1 2732 2852 -3363 1303 213 16 25 chr12 53544914 53545233 -90737256 - L1M4 LINE L1 -1336 6229 5914 * 10361 153 140 8 chr12 53545225 53547100 -90735389 - L1M4 LINE L1 -5434 2131 11 1889 133 11 11 chr12 53547112 53547397 -90735092 - AluJb SINE Alu -27 285 1 839 222 28 19 chr12 53547399 53547615 -90734874 - L1M4 LINE L1 -2302 5263 5046 23 121 0 0 chr12 53547616 53547765 -90734724 + AT_rich Low_complexity Low_complexity 1 149 0 390 317 81 39 chr12 53548213 53548522 -90733967 + MLT1K LTR MaLR 150 471 -117 2040 132 31 0 chr12 53548645 53548934 -90733555 - AluSx SINE Alu -14 298 1 516 192 83 45 chr12 53548934 53549090 -90733399 + L1MC5 LINE L1 7752 7913 -48 695 285 28 8 chr12 53549111 53549364 -90733125 + L1M4 LINE L1 4909 5166 -980 4165 196 4 0 chr12 53549365 53550182 -90732307 + L1PB3 LINE L1 4130 4949 -1197 2277 95 27 112 chr12 53550188 53550598 -90731891 + THE1C LTR MaLR 1 375 0 11319 106 10 43 chr12 53550598 53552231 -90730258 + THE1C-int LTR MaLR 1 1580 0 2154 131 17 26 chr12 53552236 53552587 -90729902 + THE1C LTR MaLR 2 349 -26 4828 156 18 40 chr12 53552667 53553382 -90729107 + L1PB3 LINE L1 4955 5632 -522 342 0 0 0 chr12 53553382 53553420 -90729069 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4828 156 18 40 chr12 53553420 53553930 -90728559 + L1PB3 LINE L1 5632 6152 -2 1833 144 3 33 chr12 53554034 53554340 -90728149 - AluJo SINE Alu -15 297 1 1659 172 15 0 chr12 53554359 53554632 -90727857 - AluJo SINE Alu -23 289 13 1452 243 86 9 chr12 53555211 53555630 -90726859 - L2 LINE L2 -967 2347 1897 1682 149 53 30 chr12 53555807 53556109 -90726380 - AluJo SINE Alu -3 309 1 2347 89 3 0 chr12 53556182 53556474 -90726015 - AluSg SINE Alu -17 293 1 723 227 104 14 chr12 53556597 53556817 -90725672 - Charlie1 DNA MER1_type -373 2388 2149 1025 158 22 22 chr12 53556817 53557000 -90725489 - AluJo SINE Alu -10 302 120 2145 133 0 10 chr12 53557001 53557310 -90725179 + AluSq SINE Alu 1 306 -7 1764 119 92 4 chr12 53557945 53558205 -90724284 - AluSq SINE Alu -30 283 1 234 0 0 0 chr12 53559406 53559432 -90723057 + (T)n Simple_repeat Simple_repeat 1 26 0 2906 141 68 45 chr12 53559541 53560102 -90722387 + MER4B LTR ERV1 1 574 -36 702 218 8 15 chr12 53560373 53560506 -90721983 + FLAM_A SINE Alu 2 133 0 23 0 0 0 chr12 53560560 53560583 -90721906 + AT_rich Low_complexity Low_complexity 1 23 0 763 208 0 6 chr12 53560688 53560847 -90721642 - L1MA10 LINE L1 -3 6331 6174 391 164 0 0 chr12 53560949 53561022 -90721467 - LTR30 LTR ERV1 -98 624 552 841 121 4 17 chr12 53561514 53561735 -90720754 + AluSx SINE Alu 2 306 -4 884 199 157 70 chr12 53561737 53562094 -90720395 + L1ME3 LINE L1 5773 6160 -2 405 292 78 0 chr12 53562122 53562314 -90720175 + L1M4 LINE L1 3289 3495 -2651 3791 123 25 16 chr12 53562321 53563071 -90719418 - MER61-int LTR ERV1 -2404 5054 2226 5257 123 88 69 chr12 53563071 53563699 -90718790 - MER61-int LTR ERV1 -3196 2021 1369 3162 160 52 20 chr12 53563699 53564292 -90718197 - LTR9 LTR ERV1 0 612 1 5257 123 88 69 chr12 53564292 53564804 -90717685 - MER61-int LTR ERV1 -3848 1369 868 639 212 0 0 chr12 53564804 53564917 -90717572 + LTR8 LTR ERV1 1 113 -578 1688 142 7 35 chr12 53565053 53565193 -90717296 + AluJo SINE Alu 2 131 -181 2156 104 28 3 chr12 53565193 53565482 -90717007 + AluSx SINE Alu 1 296 -16 1688 142 7 35 chr12 53565482 53565630 -90716859 + AluJo SINE Alu 131 282 -30 712 251 155 5 chr12 53565683 53565890 -90716599 + MLT2F LTR ERVL 372 609 -54 287 203 63 0 chr12 53565960 53566039 -90716450 - FRAM SINE Alu -30 136 53 2166 121 0 10 chr12 53566927 53567096 -90715393 - AluSx SINE Alu -10 302 136 2120 125 10 0 chr12 53567096 53567385 -90715104 - AluSg SINE Alu -18 292 1 2166 121 0 10 chr12 53567385 53567520 -90714969 - AluSx SINE Alu -176 136 1 286 271 62 10 chr12 53567546 53567642 -90714847 - MIR SINE MIR -113 149 49 1045 194 45 5 chr12 53567846 53568047 -90714442 + AluJb SINE Alu 85 293 -19 2044 115 20 0 chr12 53568118 53568413 -90714076 - AluSx SINE Alu -11 301 1 2344 100 0 10 chr12 53568420 53568731 -90713758 - AluSc SINE Alu -1 308 1 2286 121 0 7 chr12 53568955 53569261 -90713228 - AluSx SINE Alu -8 304 1 1720 144 12 0 chr12 53569998 53570254 -90712235 - AluJo SINE Alu -16 296 38 438 262 125 111 chr12 53571245 53571412 -90711077 - L2 LINE L2 -1 3271 3108 2013 127 3 7 chr12 53571412 53571541 -90710948 + AluSq SINE Alu 1 129 -184 225 0 0 0 chr12 53571541 53571566 -90710923 + (CA)n Simple_repeat Simple_repeat 2 26 0 2013 127 3 7 chr12 53571566 53571726 -90710763 + AluSq SINE Alu 129 289 -24 2263 112 10 0 chr12 53571726 53572022 -90710467 + AluSx SINE Alu 1 299 -13 438 262 125 111 chr12 53571727 53572197 -90710292 - L2 LINE L2 -164 3108 2924 1367 278 101 47 chr12 53572235 53572396 -90710093 - MLT2F LTR ERVL -6 657 506 2241 135 0 0 chr12 53572396 53572707 -90709782 + AluSx SINE Alu 1 311 -1 1367 278 101 47 chr12 53572707 53573167 -90709322 - MLT2F LTR ERVL -157 506 2 1808 234 101 63 chr12 53573168 53573789 -90708700 - ERVL-F LTR ERVL -8 5756 5112 1763 231 51 3 chr12 53573813 53574202 -90708287 - ERVL LTR ERVL -2993 2771 2364 724 183 42 0 chr12 53574210 53574330 -90708159 - FLAM_C SINE Alu -17 126 2 3370 257 60 25 chr12 53574330 53574420 -90708069 - ERVL LTR ERVL -3386 2378 2293 1884 164 0 29 chr12 53574420 53574731 -90707758 - AluJo SINE Alu -10 302 1 3370 257 60 25 chr12 53574731 53575683 -90706806 - ERVL LTR ERVL -3471 2293 1256 1250 152 5 49 chr12 53575683 53575907 -90706582 - MER20 DNA MER1_type -4 215 2 3370 257 60 25 chr12 53575907 53575978 -90706511 - ERVL LTR ERVL -4508 1256 1189 456 164 107 64 chr12 53576252 53576392 -90706097 + L1MC4 LINE L1 5690 5835 -1973 554 175 10 0 chr12 53576709 53576806 -90705683 - L1MC4 LINE L1 -1037 7005 6908 2189 115 3 0 chr12 53576806 53577101 -90705388 - AluSx SINE Alu -2 310 15 358 283 28 28 chr12 53577223 53577368 -90705121 - MER117 DNA MER1_type -50 147 3 180 0 0 0 chr12 53577649 53577669 -90704820 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 545 148 98 0 chr12 53577669 53577791 -90704698 + L1MC4 LINE L1 7006 7139 -903 1116 127 6 6 chr12 53577795 53577953 -90704536 - AluSg/x SINE Alu -21 289 132 2326 93 0 22 chr12 53577953 53578266 -90704223 - AluSx SINE Alu -6 306 1 2717 208 81 58 chr12 53578293 53578508 -90703981 + L1MC4 LINE L1 7157 7366 -676 616 246 58 43 chr12 53578508 53578715 -90703774 - MER63A DNA MER1_type 0 210 1 2717 208 81 58 chr12 53578715 53578920 -90703569 + L1MC4 LINE L1 7366 7565 -477 2136 128 0 10 chr12 53578920 53579232 -90703257 + AluSp SINE Alu 1 309 -4 2717 208 81 58 chr12 53579232 53579674 -90702815 + L1MC4 LINE L1 7565 8040 -2 252 250 54 0 chr12 53580741 53580797 -90701692 + L2 LINE L2 3208 3266 -6 249 290 0 0 chr12 53581511 53581573 -90700916 + MIR SINE MIR 201 262 0 863 182 0 0 chr12 53581865 53582044 -90700445 + FRAM SINE Alu 1 43 0 1679 112 0 5 chr12 53582295 53582518 -90699971 + AluSx SINE Alu 1 222 -90 2257 119 0 0 chr12 53583395 53583688 -90698801 + AluSx SINE Alu 1 293 -19 302 300 29 21 chr12 53584065 53584205 -90698284 - L1ME LINE L1 -420 5701 5561 1955 146 42 0 chr12 53584493 53584781 -90697708 - AluSx SINE Alu -9 303 4 704 240 0 17 chr12 53584781 53584960 -90697529 + L1M4 LINE L1 4513 4688 -1458 1768 84 0 0 chr12 53584961 53585186 -90697303 - AluY SINE Alu -12 299 75 1144 121 0 6 chr12 53585288 53585453 -90697036 + AluSg/x SINE Alu 130 293 -19 730 142 17 25 chr12 53585467 53585587 -90696902 + FLAM_C SINE Alu 2 120 -23 1914 145 14 0 chr12 53585607 53585890 -90696599 - AluSx SINE Alu -23 289 3 21 0 0 0 chr12 53585899 53585920 -90696569 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr12 53585965 53585993 -90696496 + (A)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr12 53586296 53586323 -90696166 + (CA)n Simple_repeat Simple_repeat 2 28 0 243 61 0 0 chr12 53586441 53586474 -90696015 + (CA)n Simple_repeat Simple_repeat 2 34 0 482 280 89 30 chr12 53586914 53587150 -90695339 + MIR SINE MIR 7 256 -6 661 83 0 0 chr12 53587840 53587924 -90694565 + AluSp/q SINE Alu 208 291 -22 2351 106 3 0 chr12 53587995 53588298 -90694191 + AluSx SINE Alu 1 304 -8 506 228 126 72 chr12 53588731 53588994 -90693495 + Charlie2 DNA MER1_type 19 295 -2567 1217 232 56 24 chr12 53588996 53589337 -90693152 + Charlie2 DNA MER1_type 1852 2203 -659 2109 91 47 7 chr12 53589415 53589712 -90692777 - AluSp SINE Alu -4 309 1 2138 112 7 3 chr12 53589712 53590007 -90692482 - AluSc SINE Alu -12 297 2 1462 229 26 7 chr12 53590012 53590367 -90692122 - L1MC/D LINE L1 -693 5651 5312 1093 166 0 0 chr12 53590640 53590809 -90691680 - AluY SINE Alu -23 288 120 2151 184 51 65 chr12 53590871 53591383 -90691106 + MLT1D LTR MaLR 1 505 0 1148 56 0 0 chr12 53591677 53591821 -90690668 - L1PA5 LINE L1 -3 6151 6008 13210 34 4 0 chr12 53591821 53593694 -90688795 - L1P2 LINE L1 -469 5685 3805 2274 116 0 0 chr12 53593697 53593991 -90688498 - AluSx SINE Alu -18 294 1 555 157 0 74 chr12 53594121 53594229 -90688260 - AluS SINE Alu -212 101 2 205 293 61 107 chr12 53594743 53594873 -90687616 - L2 LINE L2 -98 3174 3060 2448 71 7 0 chr12 53594873 53595167 -90687322 - AluY SINE Alu -15 296 1 205 293 61 107 chr12 53595167 53595299 -90687190 - L2 LINE L2 -212 3060 2924 1835 133 0 0 chr12 53595709 53595964 -90686525 - AluSq SINE Alu -58 255 1 619 117 0 36 chr12 53595978 53596089 -90686400 - FRAM SINE Alu 0 176 70 524 250 56 44 chr12 53596180 53596360 -90686129 + MIR SINE MIR 2 183 -79 757 123 0 0 chr12 53596360 53596474 -90686015 - FLAM_C SINE Alu -13 130 17 1343 149 219 10 chr12 53596615 53596891 -90685598 + LTR18B LTR ERVL 251 357 0 274 71 24 0 chr12 53596892 53596934 -90685555 + HY3 scRNA scRNA 38 80 -21 1192 195 18 18 chr12 53596934 53597160 -90685329 - AluJb SINE Alu -24 288 63 1896 118 3 49 chr12 53599303 53599460 -90683029 - AluJb SINE Alu -21 291 153 2459 48 7 3 chr12 53599460 53599755 -90682734 - AluSp SINE Alu -17 296 1 1896 118 3 49 chr12 53599755 53599902 -90682587 - AluJb SINE Alu -159 153 1 321 282 49 21 chr12 53601207 53601349 -90681140 + MIR SINE MIR 72 217 -45 1799 101 119 11 chr12 53601971 53602249 -90680240 - AluSq SINE Alu -5 308 1 1203 167 24 14 chr12 53602658 53602868 -90679621 - AluJb SINE Alu -31 281 70 1875 171 3 0 chr12 53603178 53603483 -90679006 - AluJb SINE Alu -6 306 1 798 116 7 51 chr12 53604219 53604357 -90678132 - FLAM_C SINE Alu -1 132 1 2223 114 0 3 chr12 53605005 53605302 -90677187 - AluSx SINE Alu -16 296 1 1746 145 17 84 chr12 53605376 53605546 -90676943 + MER2 DNA MER2_type 11 146 -199 1622 180 50 4 chr12 53605546 53605824 -90676665 - AluJo SINE Alu -21 291 1 1746 145 17 84 chr12 53605824 53606012 -90676477 + MER2 DNA MER2_type 146 345 0 947 141 116 120 chr12 53606348 53606589 -90675900 + AluJo SINE Alu 61 300 -12 2129 130 10 0 chr12 53606700 53607000 -90675489 + AluJb SINE Alu 1 303 -9 22 0 0 0 chr12 53607369 53607391 -90675098 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr12 53607853 53607880 -90674609 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1371 149 137 8 chr12 53607883 53608132 -90674357 - AluJb SINE Alu -31 281 1 2259 113 6 0 chr12 53608221 53608532 -90673957 - AluSq SINE Alu 0 313 1 283 143 0 0 chr12 53608669 53608718 -90673771 - L1MC4 LINE L1 -2 8040 7992 755 262 72 50 chr12 53609208 53609567 -90672922 - L1MC4a LINE L1 -1850 5958 5592 1740 145 27 47 chr12 53609623 53609773 -90672716 - AluJb SINE Alu -11 291 148 2473 80 0 19 chr12 53609773 53609947 -90672542 - AluSq SINE Alu -7 306 139 2077 129 7 3 chr12 53609947 53610242 -90672247 - AluSg SINE Alu -14 296 1 2473 80 0 19 chr12 53610242 53610379 -90672110 - AluSq SINE Alu -174 139 1 1740 145 27 47 chr12 53610379 53610525 -90671964 - AluJb SINE Alu -154 148 1 1475 87 5 10 chr12 53610561 53610756 -90671733 + AluSc SINE Alu 1 194 -115 2273 97 3 31 chr12 53611131 53611451 -90671038 - AluSx SINE Alu -1 311 1 2276 91 3 10 chr12 53611469 53611766 -90670723 - AluSx SINE Alu -17 295 1 216 0 0 0 chr12 53611768 53611792 -90670697 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2055 124 0 3 chr12 53611792 53612075 -90670414 - AluSx SINE Alu -30 282 1 22 0 0 0 chr12 53612276 53612298 -90670191 + AT_rich Low_complexity Low_complexity 1 22 0 750 86 9 19 chr12 53612403 53612508 -90669981 + U6 snRNA snRNA 1 104 -3 2382 92 0 0 chr12 53612525 53612820 -90669669 + AluSx SINE Alu 3 297 -15 1003 183 6 0 chr12 53612889 53613058 -90669431 - AluJb SINE Alu -13 299 130 1559 114 0 32 chr12 53613132 53613352 -90669137 + AluSq SINE Alu 86 298 -15 2284 114 3 0 chr12 53614782 53615090 -90667399 + AluSg SINE Alu 1 309 -1 1990 106 7 3 chr12 53615215 53615498 -90666991 + AluY SINE Alu 1 284 -27 456 97 16 0 chr12 53615581 53615643 -90666846 - U7 snRNA snRNA 0 63 1 2112 113 14 0 chr12 53616112 53616404 -90666085 - AluSx SINE Alu -12 300 5 1889 119 0 21 chr12 53616419 53616743 -90665746 - AluSq SINE Alu 0 320 3 186 71 0 0 chr12 53618290 53618318 -90664171 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 216 0 0 0 chr12 53618317 53618341 -90664148 + (CA)n Simple_repeat Simple_repeat 2 25 0 428 118 26 0 chr12 53618349 53618425 -90664064 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 1379 162 0 21 chr12 53618428 53618669 -90663820 - AluJo SINE Alu -23 289 54 1875 168 0 0 chr12 53618712 53619003 -90663486 + AluJb SINE Alu 14 304 -8 2278 114 0 0 chr12 53619005 53619304 -90663185 + AluSx SINE Alu 1 299 -13 5409 123 20 40 chr12 53619305 53619594 -90662895 - MER4D LTR ERV1 -10 893 600 1488 156 107 35 chr12 53619594 53619883 -90662606 + AluJo SINE Alu 3 312 0 5409 123 20 40 chr12 53619883 53620311 -90662178 - MER4D LTR ERV1 -303 600 194 2058 110 3 21 chr12 53620311 53620624 -90661865 - AluSp SINE Alu 0 308 1 5409 123 20 40 chr12 53620624 53620811 -90661678 - MER4D LTR ERV1 -709 194 5 284 270 126 36 chr12 53621517 53621628 -90660861 - MIR SINE MIR -70 138 18 692 112 45 15 chr12 53622496 53622630 -90659859 + L1MA3 LINE L1 6168 6305 0 1802 173 0 37 chr12 53622666 53622989 -90659500 - AluJo SINE Alu -1 311 1 25 31 0 0 chr12 53623019 53623051 -90659438 + AT_rich Low_complexity Low_complexity 1 32 0 1793 132 7 54 chr12 53623051 53623379 -90659110 - AluSx SINE Alu 0 314 1 2359 84 3 0 chr12 53623382 53623679 -90658810 - AluSg SINE Alu -12 298 1 2255 102 0 0 chr12 53623690 53623975 -90658514 - AluSg SINE Alu -25 285 1 2300 129 0 0 chr12 53623981 53624290 -90658199 - AluSx SINE Alu -3 309 1 1642 204 0 0 chr12 53624292 53624571 -90657918 - AluJb SINE Alu -23 289 11 813 166 30 30 chr12 53624804 53624973 -90657516 - AluJ SINE Alu -24 288 120 234 111 0 74 chr12 53624975 53625029 -90657460 - L1PA14 LINE L1 0 6161 6112 189 107 0 0 chr12 53625029 53625057 -90657432 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 406 79 32 0 chr12 53625057 53625120 -90657369 - MER41B LTR ERV1 -90 545 481 1517 85 0 0 chr12 53625120 53625320 -90657169 - L1PA14 LINE L1 -33 6128 5929 852 153 30 0 chr12 53625320 53625451 -90657038 - AluJ SINE Alu -177 135 1 2442 77 3 0 chr12 53625461 53625758 -90656731 - AluSx SINE Alu -14 298 1 2184 112 10 16 chr12 53626604 53626918 -90655571 - AluSx SINE Alu 0 312 1 1864 159 0 10 chr12 53628257 53628565 -90653924 - AluSx SINE Alu -7 305 1 2196 119 3 0 chr12 53628623 53628934 -90653555 - AluSx SINE Alu 0 312 1 1664 167 76 0 chr12 53628934 53629222 -90653267 - AluJo SINE Alu -2 310 1 872 198 38 0 chr12 53629403 53629560 -90652929 + AluJb SINE Alu 134 296 -16 2145 111 3 13 chr12 53630041 53630348 -90652141 - AluSx SINE Alu -8 304 1 2146 108 10 3 chr12 53631328 53631616 -90650873 - AluSx SINE Alu -22 290 1 2148 113 3 26 chr12 53632297 53632607 -90649882 + AluSx SINE Alu 1 303 -9 1757 167 13 10 chr12 53632627 53632798 -90649691 - AluJb SINE Alu -6 306 132 2201 103 3 13 chr12 53632798 53633100 -90649389 - AluSp SINE Alu -14 299 1 1757 167 13 10 chr12 53633100 53633233 -90649256 - AluJb SINE Alu -180 132 1 328 220 60 10 chr12 53633253 53633353 -90649136 + MER103 DNA DNA 52 156 -10 28 0 0 0 chr12 53633431 53633459 -90649030 + AT_rich Low_complexity Low_complexity 1 28 0 2280 110 3 3 chr12 53633883 53634193 -90648296 - AluSx SINE Alu -2 310 1 203 190 190 25 chr12 53634693 53634772 -90647717 - L2 LINE L2 -1 3271 3180 942 136 0 0 chr12 53635932 53636057 -90646432 + FLAM_C SINE Alu 1 125 -18 28 29 0 0 chr12 53636515 53636550 -90645939 + AT_rich Low_complexity Low_complexity 1 35 0 1972 156 0 3 chr12 53637144 53637432 -90645057 - AluSx SINE Alu -25 287 1 1773 166 3 28 chr12 53637626 53637945 -90644544 + AluJo SINE Alu 1 311 -1 2048 103 14 14 chr12 53641630 53641920 -90640569 - AluSx SINE Alu -22 290 1 831 135 0 23 chr12 53641920 53642053 -90640436 - AluJb SINE Alu -182 130 1 341 210 60 10 chr12 53642073 53642173 -90640316 + MER103 DNA DNA 52 156 -10 27 0 0 0 chr12 53642251 53642278 -90640211 + AT_rich Low_complexity Low_complexity 1 27 0 2118 93 13 29 chr12 53642699 53643012 -90639477 - AluSc SINE Alu -1 308 1 1735 86 9 0 chr12 53643023 53643256 -90639233 - L1MA2 LINE L1 0 6304 6070 1175 253 83 62 chr12 53643257 53643780 -90638709 - L1MEc LINE L1 -4297 2099 1559 2339 86 3 13 chr12 53643780 53644093 -90638396 - AluSg SINE Alu 0 310 1 1175 253 83 62 chr12 53644093 53644209 -90638280 - L1MEc LINE L1 -4837 1559 1447 777 234 51 19 chr12 53644226 53644440 -90638049 - L1MC5 LINE L1 -1117 6844 6624 1842 177 41 6 chr12 53644561 53644905 -90637584 + MLT1A1 LTR MaLR 1 356 -9 416 232 80 36 chr12 53645049 53645187 -90637302 + L1MC4 LINE L1 7759 7902 -140 386 217 47 8 chr12 53645237 53645366 -90637123 + L1MC4 LINE L1 7905 8038 -4 1663 144 45 14 chr12 53645474 53645765 -90636724 - AluJb SINE Alu -12 300 1 1888 147 35 0 chr12 53645813 53646098 -90636391 - AluJb SINE Alu -17 295 1 23 68 0 0 chr12 53646143 53646187 -90636302 + AT_rich Low_complexity Low_complexity 1 44 0 1478 196 73 18 chr12 53646451 53646737 -90635752 + AluJo SINE Alu 1 302 0 1752 177 10 0 chr12 53646989 53647277 -90635212 + AluJb SINE Alu 1 291 -21 2025 134 19 3 chr12 53647946 53648253 -90634236 - AluSx SINE Alu 0 312 1 21 100 0 0 chr12 53648615 53648685 -90633804 + AT_rich Low_complexity Low_complexity 1 70 0 1311 173 36 5 chr12 53650182 53650561 -90631928 + L1M4 LINE L1 5106 5494 -690 1976 128 7 39 chr12 53650561 53650867 -90631622 + AluSx SINE Alu 1 296 -16 1104 163 0 0 chr12 53651468 53651634 -90630855 - AluSg/x SINE Alu -13 299 134 2340 102 0 7 chr12 53651634 53651939 -90630550 - AluSx SINE Alu -9 303 1 625 176 0 0 chr12 53651942 53652050 -90630439 - L1M4 LINE L1 -623 5561 5454 820 268 147 65 chr12 53652085 53652501 -90629988 - L1M4 LINE L1 -1801 4345 3965 1766 173 13 7 chr12 53652501 53652807 -90629682 - AluJo SINE Alu -4 308 1 820 268 147 65 chr12 53652807 53652823 -90629666 - L1M4 LINE L1 -2181 3965 3952 1472 207 43 0 chr12 53652823 53653122 -90629367 - AluJo SINE Alu 0 312 1 820 268 147 65 chr12 53653122 53653184 -90629305 - L1M4 LINE L1 -2194 3952 3897 1598 195 0 24 chr12 53653184 53653481 -90629008 - AluJo SINE Alu -22 290 1 820 268 147 65 chr12 53653481 53654154 -90628335 - L1M4 LINE L1 -2249 3897 3080 275 196 39 0 chr12 53654154 53654205 -90628284 - AluSp SINE Alu -115 188 136 958 131 0 14 chr12 53654215 53654360 -90628129 - FLAM_C SINE Alu 0 143 1 405 0 0 0 chr12 53654485 53654530 -90627959 + (TA)n Simple_repeat Simple_repeat 1 45 0 2112 94 30 7 chr12 53654538 53654836 -90627653 - AluSg SINE Alu 0 310 6 360 244 73 24 chr12 53654851 53655056 -90627433 - L1M4 LINE L1 -3119 3027 2813 2910 212 51 54 chr12 53655060 53655247 -90627242 - L1ME1 LINE L1 -5 6161 5975 2366 102 3 3 chr12 53655247 53655560 -90626929 + AluSp SINE Alu 1 313 0 2910 212 51 54 chr12 53655560 53656137 -90626352 - L1ME1 LINE L1 -191 5975 5397 1558 201 32 7 chr12 53656137 53656415 -90626074 - AluJo SINE Alu -27 285 1 2910 212 51 54 chr12 53656415 53656488 -90626001 - L1ME1 LINE L1 -769 5397 5325 1779 165 0 23 chr12 53656537 53656846 -90625643 - AluJb SINE Alu -10 302 1 250 267 23 23 chr12 53657065 53657151 -90625338 - L1ME1 LINE L1 -2310 3836 3751 2519 200 50 66 chr12 53657164 53657383 -90625106 - L1M4 LINE L1 -948 5198 4977 1775 174 65 31 chr12 53657383 53657734 -90624755 - MLT1A1 LTR MaLR -2 363 1 2519 200 50 66 chr12 53657734 53657946 -90624543 - L1M4 LINE L1 -1169 4977 4763 1538 203 14 7 chr12 53657946 53658232 -90624257 - AluJo SINE Alu -24 288 1 2519 200 50 66 chr12 53658232 53658545 -90623944 - L1M4 LINE L1 -1383 4763 4465 373 155 119 0 chr12 53658674 53658758 -90623731 - L1ME2 LINE L1 -284 5880 5787 1044 160 105 0 chr12 53658758 53658939 -90623550 + MSTA LTR MaLR 1 200 -226 1766 180 0 3 chr12 53658939 53659228 -90623261 + AluJo SINE Alu 1 288 -24 14034 229 26 15 chr12 53659343 53661055 -90621434 + L1PA15 LINE L1 1266 2958 -3839 2012 141 14 0 chr12 53661055 53661346 -90621143 - AluSg SINE Alu -15 295 1 14034 229 26 15 chr12 53661346 53663806 -90618683 + L1PA15 LINE L1 2958 5488 -1309 6055 127 24 3 chr12 53663807 53664860 -90617629 + L1PA15 LINE L1 5731 6811 -5 1337 153 42 4 chr12 53664868 53665104 -90617385 + MSTA LTR MaLR 184 428 0 686 200 117 6 chr12 53665104 53665284 -90617205 - L1ME2 LINE L1 -2204 5791 5592 2024 148 0 16 chr12 53665318 53665635 -90616854 - AluJb SINE Alu 0 312 1 551 253 25 6 chr12 53665878 53666040 -90616449 - L1ME LINE L1 -386 5735 5571 198 0 0 0 chr12 53666297 53666319 -90616170 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 2368 72 0 44 chr12 53666416 53666783 -90615706 - AluY SINE Alu 0 311 1 948 136 0 0 chr12 53668522 53668647 -90613842 + FLAM_C SINE Alu 1 125 -18 28 29 0 0 chr12 53669105 53669140 -90613349 + AT_rich Low_complexity Low_complexity 1 35 0 1988 156 0 3 chr12 53669734 53670022 -90612467 - AluSx SINE Alu -25 287 1 1535 163 12 41 chr12 53670216 53670536 -90611953 + AluJo SINE Alu 1 311 -1 340 271 175 23 chr12 53674108 53674285 -90608204 - MIR SINE MIR -27 235 32 1331 92 0 17 chr12 53674387 53674560 -90607929 - AluSc SINE Alu -139 170 1 195 102 51 102 chr12 53674566 53674625 -90607864 + MER5A DNA MER1_type 132 187 -2 1730 130 96 0 chr12 53676371 53676665 -90605824 - AluSx SINE Alu 0 320 2 1988 160 0 0 chr12 53676666 53676960 -90605529 - AluJb SINE Alu -18 294 1 44001 46 3 2 chr12 53678249 53684379 -90598110 - L1PA5 LINE L1 0 6154 22 522 185 19 37 chr12 53684379 53684487 -90598002 + MER99 DNA DNA 479 584 -244 2259 121 0 3 chr12 53685725 53686038 -90596451 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 53686056 53686077 -90596412 + AT_rich Low_complexity Low_complexity 1 21 0 2298 100 3 13 chr12 53687178 53687487 -90595002 - AluSx SINE Alu -6 306 1 2224 104 10 7 chr12 53687583 53687892 -90594597 - AluSx SINE Alu -2 310 1 443 227 55 8 chr12 53688036 53688164 -90594325 - L1M4 LINE L1 -2056 4090 3957 4298 122 34 43 chr12 53688170 53688569 -90593920 - L1PA16 LINE L1 -9 6157 5767 2479 67 3 0 chr12 53688569 53688869 -90593620 - AluY SINE Alu -10 301 1 4298 122 34 43 chr12 53688869 53689210 -90593279 - L1PA16 LINE L1 -399 5767 5424 1924 132 0 11 chr12 53689352 53689633 -90592856 + AluSx SINE Alu 19 296 -16 825 148 148 0 chr12 53689644 53689779 -90592710 + AluY SINE Alu 149 303 -8 4860 88 35 3 chr12 53689779 53690471 -90592018 + L1PA11 LINE L1 5461 6174 0 313 146 0 18 chr12 53690481 53690536 -90591953 + FAM SINE Alu 121 174 -1 2284 111 3 0 chr12 53690599 53690906 -90591583 + AluSp SINE Alu 1 308 -5 624 143 0 92 chr12 53690947 53691066 -90591423 + FLAM_C SINE Alu 1 108 -35 4213 84 11 0 chr12 53691071 53691619 -90590870 - MER41A LTR ERV1 0 554 1 12800 91 33 10 chr12 53691619 53691920 -90590569 - MER41A-int LTR ERV1 -2 5944 5651 2274 128 0 0 chr12 53691920 53692226 -90590263 + AluSx SINE Alu 1 306 -6 12800 91 33 10 chr12 53692226 53693703 -90588786 - MER41A-int LTR ERV1 -295 5651 4125 2175 97 7 17 chr12 53693704 53694003 -90588486 - AluSx SINE Alu -16 296 1 4434 159 74 36 chr12 53694003 53695053 -90587436 - MER41A-int LTR ERV1 -1994 2886 1598 2370 103 0 0 chr12 53695053 53695354 -90587135 + AluSx SINE Alu 1 301 -11 4434 159 74 36 chr12 53695354 53695680 -90586809 - MER41A-int LTR ERV1 -3282 1598 1286 2334 71 3 26 chr12 53695682 53695990 -90586499 - AluSx SINE Alu -11 301 1 4099 141 89 38 chr12 53696001 53696561 -90585928 - MER41A-int LTR ERV1 -4825 1121 591 1254 32 26 0 chr12 53696561 53696716 -90585773 + L1PA2 LINE L1 5997 6155 0 4099 141 89 38 chr12 53696716 53697137 -90585352 - MER41A-int LTR ERV1 -5355 591 3 3843 103 35 2 chr12 53697139 53697675 -90584814 - MER41A LTR ERV1 0 554 1 207 0 0 0 chr12 53697689 53697712 -90584777 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 240 297 20 7 chr12 53698763 53698911 -90583578 + C-rich Low_complexity Low_complexity 2 151 0 2107 78 0 15 chr12 53699161 53699430 -90583059 + AluY SINE Alu 47 311 0 1283 226 14 3 chr12 53699782 53700065 -90582424 + AluJo SINE Alu 5 290 -22 261 0 0 0 chr12 53700065 53700094 -90582395 + (CATA)n Simple_repeat Simple_repeat 4 32 0 2073 139 3 3 chr12 53700682 53700992 -90581497 - AluSx SINE Alu -2 310 1 1769 148 10 24 chr12 53701537 53701828 -90580661 - AluJb SINE Alu -25 287 1 824 192 0 0 chr12 53702057 53702203 -90580286 - AluJb SINE Alu -30 282 137 494 167 0 62 chr12 53702798 53702894 -90579595 + AluJo/FLAM SINE Alu 37 126 -186 1715 193 3 0 chr12 53702895 53703206 -90579283 + AluSx SINE Alu 1 312 0 180 0 0 0 chr12 53703709 53703729 -90578760 + (CA)n Simple_repeat Simple_repeat 2 21 0 351 225 93 0 chr12 53704176 53704305 -90578184 + L1MC4 LINE L1 6999 7139 -903 1770 168 3 7 chr12 53704309 53704467 -90578022 - AluJb SINE Alu -21 291 133 2269 104 3 10 chr12 53704467 53704775 -90577714 - AluSx SINE Alu -6 306 1 1770 168 3 7 chr12 53704775 53704908 -90577581 - AluJb SINE Alu -179 133 1 249 219 83 10 chr12 53704933 53705029 -90577460 + MER103 DNA DNA 54 156 -10 189 0 0 0 chr12 53705107 53705128 -90577361 + (T)n Simple_repeat Simple_repeat 1 21 0 1257 123 0 0 chr12 53705691 53705854 -90576635 - AluJb SINE Alu -149 163 1 25 0 0 0 chr12 53705854 53705879 -90576610 + AT_rich Low_complexity Low_complexity 1 25 0 730 100 30 0 chr12 53705879 53705979 -90576510 - U6 snRNA snRNA -4 103 1 189 0 0 0 chr12 53706002 53706023 -90576466 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 422 119 30 0 chr12 53706223 53706290 -90576199 - AluSc SINE Alu -20 289 221 2022 139 20 0 chr12 53706316 53706617 -90575872 + AluSg SINE Alu 1 307 -3 2081 283 65 27 chr12 53706920 53707755 -90574734 - ERVL LTR ERVL -3599 2165 1256 1265 147 5 49 chr12 53707755 53707979 -90574510 - MER20 DNA MER1_type -4 215 2 2081 283 65 27 chr12 53707979 53708050 -90574439 - ERVL LTR ERVL -4508 1256 1189 1804 140 11 4 chr12 53708254 53708519 -90573970 + AluSx SINE Alu 38 304 -8 1804 180 0 0 chr12 53708664 53708958 -90573531 + AluSx SINE Alu 1 294 -18 925 239 167 49 chr12 53709453 53709889 -90572600 + MER52A LTR ERV1 1 569 -1186 2440 90 0 0 chr12 53710178 53710489 -90572000 - AluY SINE Alu 0 311 1 1685 181 10 3 chr12 53710498 53710802 -90571687 - AluSx SINE Alu -6 306 1 2220 95 0 22 chr12 53710898 53711213 -90571276 - AluY SINE Alu -2 309 2 1887 124 11 0 chr12 53711294 53711569 -90570920 - AluSq SINE Alu -9 304 27 5769 74 18 6 chr12 53711857 53712653 -90569836 + L1PA5 LINE L1 5350 6154 0 2035 102 16 38 chr12 53712762 53713076 -90569413 + AluSp SINE Alu 1 307 -6 1529 190 0 3 chr12 53713076 53713364 -90569125 + AluSc SINE Alu 1 288 -21 1957 123 20 3 chr12 53713627 53713919 -90568570 - AluSx SINE Alu -15 297 1 198 322 130 14 chr12 53713937 53714083 -90568406 - L2 LINE L2 -527 2787 2625 224 383 0 21 chr12 53714129 53714270 -90568219 - L2 LINE L2 -814 2500 2363 1807 149 31 7 chr12 53714322 53714611 -90567878 + AluJb SINE Alu 1 296 -16 958 166 0 7 chr12 53715217 53715368 -90567121 + AluJo SINE Alu 1 150 -162 1546 155 3 74 chr12 53715368 53715664 -90566825 + AluJb SINE Alu 30 304 -8 246 180 40 0 chr12 53715826 53715876 -90566613 + Alu SINE Alu 247 298 -2 2481 66 0 35 chr12 53715878 53716197 -90566292 + AluSg SINE Alu 1 308 -2 573 239 93 54 chr12 53716198 53716478 -90566011 + L2 LINE L2 3022 3312 -1 2025 85 30 27 chr12 53716634 53716763 -90565726 + AluSx SINE Alu 1 128 -184 2003 110 0 0 chr12 53716763 53717075 -90565414 + AluSg SINE Alu 1 312 0 2025 85 30 27 chr12 53717075 53717239 -90565250 + AluSx SINE Alu 128 296 -16 359 268 173 8 chr12 53717292 53717419 -90565070 + MLT1K LTR MaLR 90 237 -351 690 124 41 50 chr12 53717489 53717647 -90564842 - AluJb SINE Alu 0 318 162 269 286 38 19 chr12 53717676 53717781 -90564708 + MLT1K LTR MaLR 324 430 -158 689 166 0 43 chr12 53717794 53717933 -90564556 + FLAM_C SINE Alu 1 133 0 606 143 0 38 chr12 53718102 53718207 -90564282 - AluSg/x SINE Alu -81 231 131 893 198 4 117 chr12 53718629 53718876 -90563613 - AluJo SINE Alu -92 220 2 1446 135 46 43 chr12 53718883 53719186 -90563303 - AluSx SINE Alu 0 304 1 1930 117 11 4 chr12 53719195 53719500 -90562989 - AluSq SINE Alu 0 307 1 2037 126 3 0 chr12 53719787 53720089 -90562400 - AluSx SINE Alu -9 303 1 354 278 112 54 chr12 53720127 53720350 -90562139 - L1MCa LINE L1 -4345 2081 1846 2084 114 3 10 chr12 53720354 53720661 -90561828 - AluSx SINE Alu -6 306 2 247 241 0 0 chr12 53720662 53720716 -90561773 - L1ME LINE L1 -341 5825 5772 483 138 25 0 chr12 53720817 53720897 -90561592 + AluSg/x SINE Alu 215 296 -16 747 280 12 45 chr12 53721267 53721463 -90561026 + MIR SINE MIR 28 216 -46 1625 181 27 0 chr12 53721463 53721755 -90560734 + AluJo SINE Alu 1 300 -12 747 280 12 45 chr12 53721755 53721801 -90560688 + MIR SINE MIR 216 262 0 237 108 0 0 chr12 53721946 53721983 -90560506 + (CTG)n Simple_repeat Simple_repeat 2 38 0 414 306 173 0 chr12 53722227 53722442 -90560047 + Charlie8 DNA MER1_type 76 1417 -1000 1762 149 6 19 chr12 53722793 53723108 -90559381 + AluJo SINE Alu 1 311 -1 1498 62 0 24 chr12 53723282 53723491 -90558998 + AluY SINE Alu 2 205 -106 1017 140 6 0 chr12 53723593 53723750 -90558739 - AluSx SINE Alu -154 158 1 2185 102 3 3 chr12 53724125 53724430 -90558059 - AluSp SINE Alu -7 306 2 1708 128 60 11 chr12 53724433 53724714 -90557775 - AluSg SINE Alu -10 300 6 2297 90 0 0 chr12 53724727 53725026 -90557463 - AluSg SINE Alu -11 299 1 2115 114 3 0 chr12 53725033 53725330 -90557159 - AluSx SINE Alu -14 298 1 263 208 0 0 chr12 53725332 53725380 -90557109 - L2 LINE L2 -4 3309 3262 289 245 296 10 chr12 53725560 53725658 -90556831 + MIR SINE MIR 23 148 -114 1012 63 47 0 chr12 53725683 53725810 -90556679 - MER4A LTR ERV1 0 664 532 2125 117 3 13 chr12 53725811 53725983 -90556506 - AluSp SINE Alu -7 306 137 2186 108 3 0 chr12 53725983 53726288 -90556201 - AluSp SINE Alu -7 306 1 2125 117 3 13 chr12 53726288 53726424 -90556065 - AluSp SINE Alu -176 137 1 2183 92 0 20 chr12 53726431 53726736 -90555753 - AluSg SINE Alu -11 299 1 214 333 28 0 chr12 53726736 53726808 -90555681 - L2 LINE L2 -559 2755 2682 914 199 161 52 chr12 53726958 53727225 -90555264 + AluJo SINE Alu 6 301 -11 1616 143 30 0 chr12 53727230 53727495 -90554994 - AluJo SINE Alu -39 273 1 387 60 0 0 chr12 53727918 53727968 -90554521 + (CA)n Simple_repeat Simple_repeat 1 50 0 1599 130 8 4 chr12 53728144 53728398 -90554091 - AluJo SINE Alu -47 265 11 1826 97 0 41 chr12 53728712 53728981 -90553508 + AluSq SINE Alu 1 258 -55 181 83 56 0 chr12 53728984 53729020 -90553469 + GA-rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr12 53729643 53729667 -90552822 + AT_rich Low_complexity Low_complexity 1 24 0 2170 114 13 0 chr12 53729671 53729979 -90552510 - AluSx SINE Alu 0 312 1 819 165 61 30 chr12 53729981 53730145 -90552344 - FRAM SINE Alu -4 172 4 1613 168 13 10 chr12 53730151 53730449 -90552040 - AluJo SINE Alu -13 299 1 2046 116 0 0 chr12 53730880 53731185 -90551304 - AluSg SINE Alu 0 305 1 354 122 0 108 chr12 53731461 53731535 -90550954 - AluSp/q SINE Alu 0 303 238 328 276 48 95 chr12 53731870 53732080 -90550409 + MIR SINE MIR 14 213 -49 773 143 23 23 chr12 53732194 53732327 -90550162 + FLAM_C SINE Alu 1 133 0 1730 156 30 3 chr12 53732363 53732665 -90549824 - AluSx SINE Alu -2 310 1 714 176 8 16 chr12 53732676 53732801 -90549688 - FLAM_C SINE Alu -17 126 3 843 270 91 4 chr12 53733175 53733405 -90549084 - MIR SINE MIR 0 262 13 360 259 86 43 chr12 53733732 53733871 -90548618 - L2 LINE L2 0 3313 3169 577 121 0 0 chr12 53733949 53734032 -90548457 + AluJb SINE Alu 200 282 -30 441 284 159 5 chr12 53734054 53734262 -90548227 - L2 LINE L2 -256 3057 2818 2224 93 6 0 chr12 53734411 53734722 -90547767 - AluSq SINE Alu 0 313 1 367 198 58 50 chr12 53734733 53734854 -90547635 - MER112 DNA MER1_type -99 161 40 925 189 0 28 chr12 53734854 53735034 -90547455 + FRAM SINE Alu 1 172 -4 777 304 129 23 chr12 53735331 53735673 -90546816 + L2 LINE L2 2927 3304 -9 192 331 7 65 chr12 53736067 53736206 -90546283 + L2 LINE L2 2756 2886 -428 604 107 8 123 chr12 53736276 53736398 -90546091 + FLAM_A SINE Alu 20 127 -15 2076 104 10 0 chr12 53736403 53736692 -90545797 + AluSx SINE Alu 1 292 -20 2074 133 0 0 chr12 53736960 53737261 -90545228 + AluSx SINE Alu 1 301 -11 466 260 55 16 chr12 53737888 53738015 -90544474 + L2 LINE L2 3141 3272 0 426 289 122 42 chr12 53738284 53738571 -90543918 + L1ME4a LINE L1 5602 5911 -210 2350 61 0 3 chr12 53738673 53738970 -90543519 - AluY SINE Alu -14 297 2 2202 92 10 0 chr12 53739048 53739351 -90543138 - AluSq SINE Alu -7 306 1 2472 20 3 3 chr12 53741000 53741297 -90541192 - AluY SINE Alu -13 298 2 200 254 0 16 chr12 53741944 53742007 -90540482 + (CGG)n Simple_repeat Simple_repeat 2 63 0 198 0 0 0 chr12 53743504 53743526 -90538963 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 186 71 0 0 chr12 53744027 53744055 -90538434 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1870 135 0 0 chr12 53744064 53744338 -90538151 - AluSx SINE Alu -38 274 1 544 146 0 62 chr12 53744339 53744435 -90538054 - AluJo/FLAM SINE Alu -186 126 37 483 18 0 0 chr12 53745166 53745222 -90537267 + (CCTG)n Simple_repeat Simple_repeat 2 57 0 2292 94 0 3 chr12 53745244 53745551 -90536938 - AluSc SINE Alu -3 306 1 2056 86 16 35 chr12 53745551 53745863 -90536626 - AluSp SINE Alu -6 307 1 6599 39 18 2 chr12 53745972 53746774 -90535715 - L1PA5 LINE L1 0 6154 5341 244 208 65 26 chr12 53747892 53747969 -90534520 - MER103 DNA DNA -19 147 68 848 139 0 8 chr12 53748099 53748228 -90534261 + FLAM_A SINE Alu 1 128 -5 207 100 0 0 chr12 53748269 53748299 -90534190 + (T)n Simple_repeat Simple_repeat 1 30 0 1996 99 27 7 chr12 53749285 53749577 -90532912 - AluSq SINE Alu -15 298 1 792 204 192 0 chr12 53749642 53749814 -90532675 + MER58A DNA MER1_type 20 224 0 725 146 18 0 chr12 53749822 53749932 -90532557 + MER3 DNA MER1_type 1 112 -97 1995 110 4 0 chr12 53749932 53750241 -90532248 + AluSx SINE Alu 1 310 0 1854 131 27 7 chr12 53750601 53750899 -90531590 - AluSx SINE Alu -8 304 1 261 0 0 0 chr12 53751093 53751122 -90531367 + (TATG)n Simple_repeat Simple_repeat 4 32 0 1584 166 14 3 chr12 53751122 53751405 -90531084 - AluJo SINE Alu -22 290 5 2334 86 0 13 chr12 53751756 53752071 -90530418 - AluY SINE Alu 0 311 1 889 142 0 0 chr12 53752738 53752865 -90529624 - FLAM_A SINE Alu -6 127 1 1316 161 114 26 chr12 53752927 53753072 -90529417 - AluJo SINE Alu -15 297 166 1975 135 7 0 chr12 53753072 53753369 -90529120 - AluSx SINE Alu -13 299 1 1316 161 114 26 chr12 53753369 53753496 -90528993 - AluJo SINE Alu -146 166 1 432 354 52 10 chr12 53753610 53753843 -90528646 - L1 LINE L1 -1075 5071 4832 2332 61 0 26 chr12 53754358 53754668 -90527821 + AluY SINE Alu 10 311 0 1916 139 10 0 chr12 53754762 53755065 -90527424 + AluSx SINE Alu 1 306 -6 2377 84 0 0 chr12 53755074 53755385 -90527104 + AluY SINE Alu 1 311 0 503 237 91 40 chr12 53755847 53755926 -90526563 - MER3 DNA MER1_type -1 208 134 1664 125 26 8 chr12 53755926 53756190 -90526299 + AluSx SINE Alu 30 298 -14 503 237 91 40 chr12 53756190 53756308 -90526181 - MER3 DNA MER1_type -75 134 1 835 178 0 0 chr12 53756843 53756989 -90525500 + AluJb SINE Alu 137 282 -30 1786 131 10 24 chr12 53757218 53757509 -90524980 + AluJb SINE Alu 1 287 -25 2102 86 0 64 chr12 53757696 53757874 -90524615 - AluSx SINE Alu -18 294 143 2376 66 0 7 chr12 53757874 53758176 -90524313 - AluSc SINE Alu -9 300 1 2102 86 0 64 chr12 53758176 53758311 -90524178 - AluSx SINE Alu -169 143 1 1493 124 154 8 chr12 53758591 53758850 -90523639 + AluJo SINE Alu 1 297 -5 496 304 47 18 chr12 53759366 53759537 -90522952 - MIR3 SINE MIR -25 183 8 2402 66 0 0 chr12 53763426 53763728 -90518761 - AluY SINE Alu -9 302 1 798 128 12 105 chr12 53765455 53765627 -90516862 + MER20 DNA MER1_type 1 156 -63 2068 91 3 14 chr12 53765627 53765941 -90516548 + AluSp SINE Alu 1 311 0 242 243 10 68 chr12 53765997 53766100 -90516389 + MER102a DNA MER1_type 233 329 -1 1852 190 12 15 chr12 53766408 53766750 -90515739 + LTR8 LTR ERV1 351 691 0 3298 141 7 64 chr12 53766754 53767491 -90514998 - HUERS-P3b LTR ERV1 -4350 2644 609 2258 83 0 0 chr12 53767497 53767787 -90514702 + AluY SINE Alu 1 290 -21 9396 195 51 36 chr12 53767790 53768089 -90514400 - HUERS-P3b LTR ERV1 -4870 2126 1833 1904 138 3 0 chr12 53768089 53768380 -90514109 + AluSx SINE Alu 1 292 -20 9396 195 51 36 chr12 53768380 53770115 -90512374 - HUERS-P3b LTR ERV1 -5163 1833 57 2188 104 0 0 chr12 53770115 53770413 -90512076 + AluY SINE Alu 1 298 -13 9396 195 51 36 chr12 53770413 53770469 -90512020 - HUERS-P3b LTR ERV1 -6939 57 3 1280 133 95 9 chr12 53770469 53770679 -90511810 - MER61E LTR ERV1 0 569 342 544 242 0 33 chr12 53770679 53770799 -90511690 - AluJb SINE Alu -71 241 126 2465 203 83 10 chr12 53770805 53770852 -90511637 - L1M2c LINE L1 -4517 1834 1792 1904 151 0 3 chr12 53770852 53771144 -90511345 - AluSg SINE Alu -18 292 2 2465 203 83 10 chr12 53771144 53771821 -90510668 - L1M2c LINE L1 -4559 1792 1075 2207 70 0 0 chr12 53771853 53772125 -90510364 + LTR17 LTR ERV1 1 272 -508 3741 45 16 3 chr12 53772128 53772841 -90509648 + MER11A LTR ERVK 1 961 -305 3982 78 2 19 chr12 53772859 53773381 -90509108 + LTR17 LTR ERV1 268 780 0 71731 52 8 4 chr12 53773381 53781964 -90500525 + HERV17 LTR ERV1 2 8623 -3 6213 63 9 4 chr12 53781967 53782743 -90499746 + LTR17 LTR ERV1 1 780 0 289 344 130 16 chr12 53782750 53782980 -90499509 - L1M2c LINE L1 -5240 1041 818 246 350 77 36 chr12 53783203 53783397 -90499092 - L1M2c LINE L1 -5262 1019 818 1117 274 12 33 chr12 53783498 53783830 -90498659 - L1M2c LINE L1 -5863 418 94 1172 188 0 22 chr12 53783831 53784054 -90498435 - AluJo SINE Alu -12 300 83 385 222 0 81 chr12 53784059 53784158 -90498331 - L1M2c LINE L1 -6180 101 11 21 0 0 0 chr12 53784348 53784369 -90498120 + AT_rich Low_complexity Low_complexity 1 21 0 5855 207 70 115 chr12 53784550 53784700 -90497789 - L1M4 LINE L1 -742 5436 5281 1451 203 7 14 chr12 53784700 53784991 -90497498 - AluJo SINE Alu -21 291 3 5855 207 70 115 chr12 53784991 53785343 -90497146 - L1M4 LINE L1 -897 5281 4915 1892 132 17 0 chr12 53785343 53785639 -90496850 - AluSx SINE Alu -11 301 1 5855 207 70 115 chr12 53785639 53786290 -90496199 - L1M4 LINE L1 -1263 4915 4236 1188 159 12 80 chr12 53786290 53786541 -90495948 - MER46A DNA MER2_type -1 235 2 5855 207 70 115 chr12 53786541 53786855 -90495634 - L1M4 LINE L1 -1942 4236 3909 1966 134 0 16 chr12 53786855 53787162 -90495327 - AluSx SINE Alu -10 302 1 5855 207 70 115 chr12 53787162 53787328 -90495161 - L1M4 LINE L1 -2269 3909 3737 407 165 11 33 chr12 53787328 53787419 -90495070 - L1MB5 LINE L1 0 6174 6086 5855 207 70 115 chr12 53787419 53787757 -90494732 - L1M4 LINE L1 -2441 3737 3385 1825 138 7 7 chr12 53787757 53788046 -90494443 - AluJo SINE Alu -23 289 1 5855 207 70 115 chr12 53788046 53788332 -90494157 - L1M4 LINE L1 -2793 3385 3088 843 196 0 0 chr12 53788332 53788470 -90494019 - AluJb SINE Alu -45 267 130 5855 207 70 115 chr12 53788470 53788952 -90493537 - L1M4 LINE L1 -3090 3088 2685 492 108 0 36 chr12 53788974 53789057 -90493432 - FLAM_A SINE Alu -1 141 62 708 181 0 0 chr12 53789088 53789204 -90493285 + FLAM_C SINE Alu 2 117 -26 310 171 19 7 chr12 53789325 53789407 -90493082 - L1M LINE L1 -738 5428 5352 786 228 92 54 chr12 53789463 53789818 -90492671 - L1M4 LINE L1 -3554 2592 2219 1824 153 31 0 chr12 53789818 53790112 -90492377 - AluSx SINE Alu -4 308 6 786 228 92 54 chr12 53790112 53790147 -90492342 - L1M4 LINE L1 -3927 2219 2187 4668 163 22 7 chr12 53790175 53791003 -90491486 - L1MB3 LINE L1 -10 6173 5334 2217 77 0 3 chr12 53791123 53791410 -90491079 + AluSg SINE Alu 11 296 -14 981 99 0 0 chr12 53791641 53791772 -90490717 + AluJo/FLAM SINE Alu 1 131 -181 962 141 11 23 chr12 53791775 53791952 -90490537 - AluSg/x SINE Alu -6 306 132 666 167 0 9 chr12 53791972 53792080 -90490409 + FLAM_C SINE Alu 2 108 -35 1597 148 48 4 chr12 53792098 53792412 -90490077 + AluSx SINE Alu 2 327 0 1797 141 7 3 chr12 53793349 53793646 -90488843 - AluJo SINE Alu -3 309 12 2253 91 0 0 chr12 53793923 53794221 -90488268 - AluY SINE Alu -13 298 1 1933 249 85 27 chr12 53794255 53794770 -90487719 + MLT1H1 LTR MaLR 3 547 -8 1864 146 0 0 chr12 53795378 53795665 -90486824 - AluSx SINE Alu -11 301 15 284 328 48 40 chr12 53795690 53795815 -90486674 + L2 LINE L2 3137 3262 -10 2174 96 0 20 chr12 53795915 53796216 -90486273 - AluSq SINE Alu -18 295 1 2237 101 0 0 chr12 53796233 53796539 -90485950 - AluSg SINE Alu -4 306 1 2027 134 3 0 chr12 53797315 53797614 -90484875 - AluSx SINE Alu -12 300 1 2255 89 0 0 chr12 53797625 53797916 -90484573 - AluSg SINE Alu -19 291 1 2216 94 3 3 chr12 53798001 53798308 -90484181 - AluSp SINE Alu -6 307 1 336 195 138 69 chr12 53798359 53798519 -90483970 + L1MC5 LINE L1 7746 7920 -41 2109 90 21 0 chr12 53798519 53798807 -90483682 + AluSg SINE Alu 1 294 -16 336 195 138 69 chr12 53798807 53798820 -90483669 + L1MC5 LINE L1 7920 7931 -30 490 87 72 0 chr12 53799033 53799102 -90483387 - MADE1 DNA Mariner -5 75 2 859 211 83 28 chr12 53799130 53799348 -90483141 - MIR SINE MIR -3 259 30 639 310 69 45 chr12 53801317 53801420 -90481069 + L2 LINE L2 3013 3112 -201 206 0 69 0 chr12 53801420 53801449 -90481040 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2136 73 0 0 chr12 53801455 53801730 -90480759 - AluSx SINE Alu -37 275 1 639 310 69 45 chr12 53801730 53801909 -90480580 + L2 LINE L2 3116 3309 -4 230 246 176 49 chr12 53802043 53802185 -90480304 + MIR SINE MIR 49 208 -54 326 65 22 0 chr12 53802349 53802395 -90480094 + Alu SINE Alu 1 47 -253 2251 111 7 0 chr12 53852480 53852777 -90429712 - AluSx SINE Alu -13 299 1 2399 112 0 0 chr12 53853257 53853569 -90428920 - AluSx SINE Alu 0 312 1 764 172 8 8 chr12 53854597 53854731 -90427758 - FLAM_C SINE Alu -4 139 6 964 153 80 120 chr12 53854830 53855104 -90427385 + LTR54 LTR ERV1 1 263 -247 1897 155 17 0 chr12 53855104 53855400 -90427089 - AluJo SINE Alu -7 305 5 183 156 0 0 chr12 53855413 53855445 -90427044 + T-rich Low_complexity Low_complexity 1 32 0 1291 157 66 22 chr12 53856446 53856720 -90425769 + LTR54 LTR ERV1 225 510 0 1074 98 0 0 chr12 53856827 53856960 -90425529 + AluSc SINE Alu 1 133 -176 2585 64 0 10 chr12 53856960 53857274 -90425215 + AluY SINE Alu 1 311 0 2335 109 3 0 chr12 53858928 53859232 -90423257 - AluSx SINE Alu -7 305 1 1113 43 7 0 chr12 53859363 53859502 -90422987 + L1PA4 LINE L1 6016 6155 0 1218 296 125 27 chr12 53859516 53860244 -90422245 + L3 LINE CR1 324 1144 -433 2277 90 0 10 chr12 53860244 53860543 -90421946 + AluSg SINE Alu 1 296 -14 1218 296 125 27 chr12 53860543 53860639 -90421850 + L3 LINE CR1 1144 1229 -348 229 224 0 0 chr12 53860792 53860841 -90421648 + L1MB7 LINE L1 6018 6066 -118 1648 161 32 44 chr12 53860874 53861190 -90421299 + AluJb SINE Alu 1 312 0 2345 105 0 0 chr12 53861196 53861492 -90420997 + AluSx SINE Alu 1 296 -16 2273 109 0 3 chr12 53861711 53862005 -90420484 + AluSx SINE Alu 1 293 -19 2412 57 7 20 chr12 53862057 53862356 -90420133 + AluY SINE Alu 4 298 -13 28 0 0 0 chr12 53862804 53862832 -90419657 + AT_rich Low_complexity Low_complexity 1 28 0 588 209 153 134 chr12 53863204 53863377 -90419112 + MLT1H1 LTR MaLR 3 171 -381 2297 109 0 6 chr12 53863377 53863689 -90418800 - AluSg SINE Alu 0 310 1 588 209 153 134 chr12 53863689 53864059 -90418430 + MLT1H1 LTR MaLR 171 548 -4 1498 156 15 30 chr12 53864336 53864606 -90417883 - AluJo SINE Alu -20 292 27 1601 116 0 58 chr12 53864722 53864981 -90417508 + AluSg/x SINE Alu 68 311 -1 485 188 50 125 chr12 53864982 53865098 -90417391 - L1M4c LINE L1 -5909 475 373 2087 92 65 10 chr12 53865098 53865392 -90417097 - AluSg SINE Alu 0 310 1 485 188 50 125 chr12 53865392 53865435 -90417054 - L1M4c LINE L1 -6011 373 328 688 124 0 0 chr12 53865436 53865533 -90416956 - FLAM_C SINE Alu -17 126 30 1914 164 0 65 chr12 53865554 53865908 -90416581 - L1M4c LINE L1 -6039 345 14 2307 99 0 3 chr12 53865908 53866210 -90416279 - AluSg SINE Alu -9 301 1 1914 164 0 65 chr12 53866210 53866222 -90416267 - L1M4c LINE L1 -6370 14 3 1750 234 98 130 chr12 53866407 53867174 -90415315 + L1M4c LINE L1 32 822 -5562 2275 109 0 0 chr12 53867174 53867467 -90415022 + AluY SINE Alu 1 293 -18 1750 234 98 130 chr12 53867467 53867492 -90414997 + L1M4c LINE L1 822 846 -5538 385 92 31 0 chr12 53867492 53867557 -90414932 + Alu SINE Alu 236 302 0 1750 234 98 130 chr12 53867557 53867666 -90414823 + L1M4c LINE L1 846 957 -5427 183 42 0 0 chr12 53867666 53867690 -90414799 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1750 234 98 130 chr12 53867690 53867937 -90414552 + L1M4c LINE L1 957 1207 -5177 2156 133 0 0 chr12 53867937 53868245 -90414244 + AluSx SINE Alu 1 308 -4 1750 234 98 130 chr12 53868245 53868289 -90414200 + L1M4c LINE L1 1207 1251 -5133 947 89 32 32 chr12 53868287 53868444 -90414045 - L1MA8 LINE L1 -80 6211 6055 * 472 153 0 0 chr12 53868454 53868526 -90413963 - AluJ/FRAM SINE Alu -22 290 219 459 215 54 7 chr12 53868526 53868675 -90413814 - L1M4 LINE L1 -3128 3018 2863 814 95 0 0 chr12 53868675 53868780 -90413709 + U6 snRNA snRNA 2 106 -1 2324 138 18 0 chr12 53868791 53869399 -90413090 + AluSx SINE Alu 1 300 -12 876 144 0 8 chr12 53869413 53869545 -90412944 + FLAM_C SINE Alu 1 131 -12 2502 213 54 83 chr12 53869558 53869699 -90412790 + L1 LINE L1 3029 3173 -2973 1690 160 17 24 chr12 53869699 53869993 -90412496 + AluJo SINE Alu 4 295 -17 2502 213 54 83 chr12 53869993 53870090 -90412399 + L1 LINE L1 3173 3271 -2875 2411 94 0 0 chr12 53870090 53870388 -90412101 + AluSg SINE Alu 1 298 -12 2502 213 54 83 chr12 53870388 53870846 -90411643 + L1 LINE L1 3271 3693 -2453 898 133 0 0 chr12 53870846 53870974 -90411515 + FLAM_C SINE Alu 1 128 -5 2502 213 54 83 chr12 53870974 53871241 -90411248 + L1 LINE L1 3693 3966 -2180 1883 127 26 3 chr12 53871247 53871555 -90410934 + L1MB3 LINE L1 5861 6175 -8 1016 138 19 6 chr12 53871644 53871803 -90410686 + FRAM SINE Alu 4 164 -12 2250 98 11 3 chr12 53871806 53872093 -90410396 + AluSq SINE Alu 1 289 -24 25 31 0 0 chr12 53872093 53872125 -90410364 + AT_rich Low_complexity Low_complexity 1 32 0 273 160 0 0 chr12 53872140 53872190 -90410299 + Alu SINE Alu 252 301 -1 2342 198 38 9 chr12 53872216 53872666 -90409823 + LTR31 LTR ERV1 142 604 -15 1072 170 44 12 chr12 53872677 53872914 -90409575 - L1MB8 LINE L1 -99 6079 5838 2193 102 7 7 chr12 53873173 53873466 -90409023 - AluSx SINE Alu -19 293 1 1559 210 0 7 chr12 53873550 53873859 -90408630 + AluJo SINE Alu 1 307 -5 23 0 0 0 chr12 53873859 53873882 -90408607 + AT_rich Low_complexity Low_complexity 1 23 0 1425 183 3 39 chr12 53873885 53874170 -90408319 + AluJo SINE Alu 1 275 -37 1785 163 10 7 chr12 53874261 53874550 -90407939 - AluJo SINE Alu -17 295 6 250 235 0 0 chr12 53874759 53874810 -90407679 + MER5A DNA MER1_type 136 186 -3 2408 86 0 7 chr12 53874863 53875164 -90407325 + AluSx SINE Alu 1 299 -13 933 204 17 0 chr12 53875209 53875390 -90407099 + AluJb SINE Alu 121 304 -8 1406 138 89 37 chr12 53875986 53876255 -90406234 - AluJo SINE Alu -13 299 17 2332 72 10 3 chr12 53876332 53876624 -90405865 - AluSq SINE Alu -19 294 1 195 42 0 0 chr12 53877017 53877041 -90405448 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2299 75 0 0 chr12 53877043 53877324 -90405165 - AluSx SINE Alu -31 281 1 2840 32 0 0 chr12 53879234 53879547 -90402942 + AluSp SINE Alu 1 313 0 1669 114 18 121 chr12 53880513 53880845 -90401644 - AluSx SINE Alu -4 298 1 25 51 0 0 chr12 53881140 53881179 -90401310 + AT_rich Low_complexity Low_complexity 1 39 0 186 288 90 45 chr12 53881179 53881290 -90401199 + L2 LINE L2 3149 3264 -8 273 29 0 0 chr12 53881462 53881496 -90400993 + (CA)n Simple_repeat Simple_repeat 2 35 0 2465 70 3 0 chr12 53881924 53882224 -90400265 - AluSp SINE Alu -12 301 1 610 170 9 0 chr12 53882700 53882806 -90399683 - AluSq/x SINE Alu -204 108 2 2425 90 0 0 chr12 53883043 53883344 -90399145 + AluSx SINE Alu 1 301 -11 33 56 0 0 chr12 53883344 53883398 -90399091 + AT_rich Low_complexity Low_complexity 1 54 0 597 245 207 22 chr12 53883721 53884243 -90398246 - L2 LINE L2 0 3313 2699 329 284 0 0 chr12 53884244 53884325 -90398164 + MER94 DNA DNA 2 82 -52 2566 50 0 0 chr12 53884342 53884644 -90397845 - AluY SINE Alu -9 302 1 3972 192 96 17 chr12 53884677 53885682 -90396807 + L1MC4 LINE L1 6948 8031 -11 1088 119 114 10 chr12 53885694 53885887 -90396602 - L1MB3 LINE L1 -3 6180 5968 1838 166 10 3 chr12 53886004 53886293 -90396196 + AluJo SINE Alu 1 291 -21 3030 180 105 9 chr12 53886354 53887000 -90395489 - L1MB3 LINE L1 -42 6141 5434 592 146 241 7 chr12 53886977 53887114 -90395375 - L1MB3 LINE L1 -358 5813 5645 * 1638 142 60 39 chr12 53887114 53887319 -90395170 - MER44D DNA MER2_type -1882 609 410 2159 134 0 0 chr12 53887319 53887617 -90394872 + AluSx SINE Alu 1 298 -14 1638 142 60 39 chr12 53887617 53887742 -90394747 - MER44D DNA MER2_type -2081 410 2 3069 179 20 34 chr12 53887776 53888330 -90394159 + MLT2B3 LTR ERVL 1 546 -8 1246 181 52 8 chr12 53888332 53888580 -90393909 - L1MB3 LINE L1 -563 5620 5362 * 1647 238 11 32 chr12 53888565 53888667 -90393822 - L1MB3 LINE L1 -2348 3798 3695 2043 141 0 13 chr12 53888667 53888972 -90393517 + AluSx SINE Alu 1 301 -11 1647 238 11 32 chr12 53888972 53889025 -90393464 - L1MB3 LINE L1 -2451 3695 3642 2342 152 38 31 chr12 53889025 53889446 -90393043 - MSTB LTR MaLR -2 424 1 1647 238 11 32 chr12 53889446 53889756 -90392733 - L1MB3 LINE L1 -2504 3642 3342 730 119 28 0 chr12 53889762 53889871 -90392618 - HY1 scRNA scRNA 0 112 1 2340 106 0 19 chr12 53889903 53890214 -90392275 - AluSq SINE Alu -8 305 1 1198 218 109 8 chr12 53890219 53890485 -90392004 - AluJo SINE Alu -9 293 1 2087 119 43 13 chr12 53890568 53890871 -90391618 - AluSx SINE Alu 0 312 1 1576 163 23 53 chr12 53890903 53891204 -90391285 - AluJo SINE Alu -20 292 1 452 208 0 0 chr12 53891204 53891281 -90391208 - Tigger3(Golem) DNA MER2_type -2951 78 2 568 156 6 150 chr12 53891301 53891378 -90391111 - L1M4c LINE L1 -5778 606 564 2321 115 0 0 chr12 53891378 53891682 -90390807 - AluSx SINE Alu -8 304 1 568 156 6 150 chr12 53891682 53891771 -90390718 - L1M4c LINE L1 -5820 564 464 286 114 23 0 chr12 53891775 53891819 -90390670 + Alu SINE Alu 1 45 -257 1741 167 3 3 chr12 53891960 53892253 -90390236 - AluSx SINE Alu -19 293 1 2040 141 10 3 chr12 53892495 53892799 -90389690 + AluJb SINE Alu 1 306 -6 2187 113 7 0 chr12 53892811 53893112 -90389377 + AluSx SINE Alu 1 303 -9 322 171 207 37 chr12 53893245 53893327 -90389162 + MER5B DNA MER1_type 1 96 -82 344 311 0 0 chr12 53893600 53893690 -90388799 - L2 LINE L2 -8 3305 3216 2250 89 33 13 chr12 53893692 53893996 -90388493 + AluSg SINE Alu 1 310 0 1818 159 10 35 chr12 53894321 53894635 -90387854 + AluSx SINE Alu 1 306 -6 180 0 0 0 chr12 53895481 53895501 -90386988 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1947 139 0 48 chr12 53895808 53896124 -90386365 - AluSx SINE Alu -11 301 1 2140 82 6 66 chr12 53896288 53896605 -90385884 - AluSp SINE Alu -15 298 1 457 327 14 9 chr12 53896832 53897046 -90385443 + L2 LINE L2 2669 2883 -431 1599 176 0 24 chr12 53897055 53897345 -90385144 - AluJo SINE Alu -29 283 1 388 197 8 106 chr12 53897468 53897600 -90384889 - MIR SINE MIR -72 190 72 227 232 61 37 chr12 53897621 53897703 -90384786 - L2 LINE L2 0 3313 3230 708 198 9 0 chr12 53897945 53898061 -90384428 + FLAM_C SINE Alu 1 117 -16 183 184 0 0 chr12 53898062 53898100 -90384389 + CT-rich Low_complexity Low_complexity 2 39 0 1023 179 0 40 chr12 53898104 53898117 -90384372 - AluJo SINE Alu 0 312 300 907 127 0 8 chr12 53898117 53898251 -90384238 - AluJo/FLAM SINE Alu -169 133 1 1023 179 0 40 chr12 53898251 53898438 -90384051 - AluJo SINE Alu -12 300 120 2149 122 0 0 chr12 53898438 53898725 -90383764 + AluSx SINE Alu 1 287 -25 24 32 0 0 chr12 53898728 53898759 -90383730 + AT_rich Low_complexity Low_complexity 1 31 0 648 167 0 26 chr12 53898759 53898873 -90383616 - FLAM_A SINE Alu -7 135 25 300 286 196 53 chr12 53898924 53899246 -90383243 + L2 LINE L2 2945 3312 -1 2132 117 0 19 chr12 53899284 53899591 -90382898 + AluSx SINE Alu 1 301 -11 2323 95 7 10 chr12 53899591 53899897 -90382592 + AluSg SINE Alu 3 307 -3 1565 304 109 9 chr12 53900124 53901130 -90381359 + L2 LINE L2 1441 2547 -767 770 203 176 22 chr12 53901204 53901431 -90381058 - MIR SINE MIR 0 262 1 1217 264 61 44 chr12 53901545 53901710 -90380779 + L1ME LINE L1 4478 4639 -1507 1749 158 14 17 chr12 53901710 53902002 -90380487 - AluJo SINE Alu -21 291 1 1217 264 61 44 chr12 53902002 53902447 -90380042 + L1ME LINE L1 4639 5098 -1048 2017 144 0 13 chr12 53902450 53902584 -90379905 + AluSx SINE Alu 3 137 -175 2362 105 0 10 chr12 53902584 53902898 -90379591 + AluSx SINE Alu 1 311 -1 2017 144 0 13 chr12 53902898 53903062 -90379427 + AluSx SINE Alu 137 297 -15 1279 119 11 22 chr12 53903071 53903256 -90379233 + AluSg/x SINE Alu 123 305 -7 275 215 60 140 chr12 53903259 53903328 -90379161 + L1ME LINE L1 5088 5161 -985 1837 141 7 14 chr12 53903328 53903612 -90378877 + AluJo SINE Alu 1 282 -30 275 215 60 140 chr12 53903612 53903742 -90378747 + L1ME LINE L1 5161 5271 -875 1180 164 9 11 chr12 53903746 53903980 -90378509 + AluJo SINE Alu 1 292 -20 419 263 112 0 chr12 53904054 53904233 -90378256 + L1ME LINE L1 5327 5525 -645 192 347 0 0 chr12 53904327 53904402 -90378087 + L2 LINE L2 2949 3023 -249 197 239 65 0 chr12 53904612 53904658 -90377831 + L2 LINE L2 3218 3266 -6 2246 112 26 0 chr12 53904723 53905027 -90377462 + AluSx SINE Alu 1 312 0 6230 110 13 31 chr12 53905230 53906083 -90376406 + L1PB1 LINE L1 4916 5783 -368 2370 101 3 0 chr12 53906083 53906390 -90376099 + AluSg SINE Alu 1 308 -2 6230 110 13 31 chr12 53906390 53906406 -90376083 + L1PB1 LINE L1 5783 5798 -353 2290 125 0 0 chr12 53906406 53906718 -90375771 + AluSx SINE Alu 1 312 0 6230 110 13 31 chr12 53906718 53907102 -90375387 + L1PB1 LINE L1 5798 6149 -2 2286 91 3 7 chr12 53907265 53907574 -90374915 - AluY SINE Alu -3 308 1 1362 188 151 10 chr12 53907607 53908005 -90374484 + L1MC4 LINE L1 6948 7401 -641 1876 120 8 8 chr12 53908126 53908393 -90374096 - AluSx SINE Alu -45 267 1 22 35 0 0 chr12 53908468 53908497 -90373992 + AT_rich Low_complexity Low_complexity 1 29 0 332 227 0 13 chr12 53908506 53908581 -90373908 - L1MC5 LINE L1 -48 7913 7840 1820 131 86 21 chr12 53908592 53908883 -90373606 - AluSx SINE Alu -2 310 1 1531 216 116 93 chr12 53908933 53909325 -90373164 - L1ME2 LINE L1 0 6164 5783 2317 89 3 0 chr12 53909325 53909617 -90372872 - AluSx SINE Alu -5 307 15 1531 216 116 93 chr12 53909617 53909765 -90372724 - L1ME2 LINE L1 -381 5783 5640 2147 116 3 0 chr12 53909765 53910059 -90372430 - AluSp SINE Alu -18 295 1 1531 216 116 93 chr12 53910059 53910194 -90372295 - L1ME2 LINE L1 -524 5640 5471 1661 123 4 12 chr12 53910757 53911036 -90371453 + AluSp SINE Alu 44 320 0 1988 113 7 43 chr12 53911379 53911681 -90370808 - AluSx SINE Alu -10 302 12 284 348 14 14 chr12 53911938 53912079 -90370410 + MIR SINE MIR 17 157 -105 417 249 45 1 chr12 53912270 53912469 -90370020 + L1MC4 LINE L1 5978 6091 -71 546 246 0 26 chr12 53912491 53912756 -90369733 + (CATATA)n Simple_repeat Simple_repeat 1 257 0 22 0 0 0 chr12 53913334 53913356 -90369133 + AT_rich Low_complexity Low_complexity 1 22 0 39 38 0 0 chr12 53914059 53914112 -90368377 + GC_rich Low_complexity Low_complexity 1 53 0 23 68 0 0 chr12 53914315 53914359 -90368130 + GC_rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chr12 53914406 53914440 -90368049 + GC_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr12 53914787 53914823 -90367666 + AT_rich Low_complexity Low_complexity 1 36 0 1955 104 0 18 chr12 53916311 53916590 -90365899 - AluSq SINE Alu -4 309 36 1395 112 0 39 chr12 53918122 53918354 -90364135 + AluSg/x SINE Alu 89 311 -1 895 156 44 31 chr12 53918656 53918816 -90363673 - AluJb SINE Alu -15 297 136 234 306 163 10 chr12 53918964 53919062 -90363427 + L2 LINE L2 3195 3307 -6 283 207 154 114 chr12 53920078 53920227 -90362262 - MIR SINE MIR -81 181 28 24 32 0 0 chr12 53921247 53921278 -90361211 + GC_rich Low_complexity Low_complexity 1 31 0 45 19 0 0 chr12 53921609 53921661 -90360828 + GC_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr12 53921836 53921868 -90360621 + AT_rich Low_complexity Low_complexity 1 32 0 2986 157 71 2 chr12 53922033 53922611 -90359878 + L1MB3 LINE L1 5492 6109 -74 2257 81 0 3 chr12 53922636 53922919 -90359570 + AluY SINE Alu 21 302 -9 328 78 0 0 chr12 53922919 53922970 -90359519 + L1MA2 LINE L1 6253 6303 -1 1579 115 0 21 chr12 53923003 53923246 -90359243 + AluSc SINE Alu 15 252 -57 793 183 0 7 chr12 53923757 53923894 -90358595 + AluJo SINE Alu 2 137 -175 1983 158 3 3 chr12 53924217 53924521 -90357968 - AluJb SINE Alu -8 304 1 1192 146 0 46 chr12 53925183 53925402 -90357087 - AluSx SINE Alu -19 291 83 227 301 0 0 chr12 53926315 53926388 -90356101 + HsTC2 DNA Tc2 31 103 -1795 624 250 78 81 chr12 53926533 53926945 -90355544 - MLT1H LTR MaLR 0 542 137 25 0 0 0 chr12 53928188 53928213 -90354276 + GC_rich Low_complexity Low_complexity 1 25 0 24 100 0 0 chr12 53928268 53928298 -90354191 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr12 53928373 53928401 -90354088 + GC_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr12 53928464 53928488 -90354001 + (A)n Simple_repeat Simple_repeat 1 24 0 30 0 0 0 chr12 53928490 53928520 -90353969 + GC_rich Low_complexity Low_complexity 1 30 0 639 83 0 0 chr12 53928691 53928775 -90353714 - AluSx SINE Alu -225 88 5 295 394 44 6 chr12 53929160 53929340 -90353149 + L3 LINE CR1 227 413 -1164 323 233 139 12 chr12 53929351 53929437 -90353052 - L2 LINE L2 -9 3304 3208 2914 129 22 60 chr12 53929490 53929796 -90352693 + L1MB3 LINE L1 5617 5892 -291 1681 109 0 0 chr12 53929796 53930016 -90352473 + AluSg/x SINE Alu 83 302 -8 2914 129 22 60 chr12 53930016 53930297 -90352192 + L1MB3 LINE L1 5892 6182 -1 921 242 74 98 chr12 53930297 53930355 -90352134 - L2 LINE L2 -95 3218 3160 2396 99 0 0 chr12 53930355 53930658 -90351831 + AluSg SINE Alu 1 303 -7 921 242 74 98 chr12 53930658 53931109 -90351380 - L2 LINE L2 -153 3160 2715 1991 149 0 13 chr12 53931109 53931425 -90351064 - AluJb SINE Alu 0 312 1 921 242 74 98 chr12 53931425 53931442 -90351047 - L2 LINE L2 -598 2715 2699 362 217 250 0 chr12 53931443 53931535 -90350954 - MER5A DNA MER1_type 0 189 75 288 237 7 26 chr12 53931554 53931718 -90350771 + MLT1H LTR MaLR 233 392 -163 243 236 226 98 chr12 53931735 53931854 -90350635 - L2 LINE L2 -607 2707 2605 2295 125 3 0 chr12 53931854 53932159 -90350330 - AluSx SINE Alu -6 306 1 243 236 226 98 chr12 53932159 53932344 -90350145 - L2 LINE L2 -709 2605 2364 885 142 0 22 chr12 53932392 53932526 -90349963 + AluJo/FLAM SINE Alu 1 131 -181 2346 57 7 0 chr12 53932528 53932852 -90349637 + AluSp SINE Alu 1 326 0 367 158 122 0 chr12 53932924 53933006 -90349483 - L2 LINE L2 -1100 2214 2123 1435 230 115 36 chr12 53933027 53933523 -90348966 - L2 LINE L2 -1395 1919 1385 1505 133 3 83 chr12 53933745 53934069 -90348420 - AluSx SINE Alu -14 298 1 1601 162 20 56 chr12 53934094 53934397 -90348092 + AluJo SINE Alu 3 294 -18 184 184 184 13 chr12 53934413 53934489 -90348000 - L2 LINE L2 -1915 1399 1311 2251 100 6 38 chr12 53934524 53934843 -90347646 + AluSq SINE Alu 1 309 -4 241 365 214 6 chr12 53934849 53935008 -90347481 + L3 LINE CR1 464 655 -922 1278 196 65 18 chr12 53935089 53935364 -90347125 + AluJb SINE Alu 1 288 -24 889 170 0 0 chr12 53935503 53935638 -90346851 - AluJo SINE Alu -177 135 1 349 289 144 17 chr12 53935642 53935822 -90346667 + L3 LINE CR1 689 891 -686 338 228 31 83 chr12 53935823 53935931 -90346558 + L1ME4a LINE L1 5937 6032 -89 1962 153 0 3 chr12 53935931 53936226 -90346263 - AluJo SINE Alu -5 307 14 338 228 31 83 chr12 53936226 53936310 -90346179 + L1ME4a LINE L1 6032 6119 -2 329 286 243 23 chr12 53936312 53936427 -90346062 + L3 LINE CR1 968 1056 -521 1804 115 91 18 chr12 53936427 53936583 -90345906 - AluSg SINE Alu -3 307 164 222 62 0 0 chr12 53936583 53936615 -90345874 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2495 49 0 7 chr12 53936615 53936902 -90345587 - AluY SINE Alu -26 285 1 2363 63 0 3 chr12 53936904 53937188 -90345301 - AluY SINE Alu -6 305 23 1804 115 91 18 chr12 53937188 53937313 -90345176 - AluSg SINE Alu -146 164 1 2453 86 0 3 chr12 53937317 53937619 -90344870 - AluSg SINE Alu -9 301 1 329 286 243 23 chr12 53937619 53937757 -90344732 + L3 LINE CR1 1058 1283 -294 245 269 130 23 chr12 53937963 53938179 -90344310 + L1MC4a LINE L1 5711 5949 -1859 681 154 0 9 chr12 53938188 53938298 -90344191 + FLAM_C SINE Alu 9 117 -26 1695 197 7 3 chr12 53938423 53938717 -90343772 + AluJb SINE Alu 2 296 -16 289 234 0 13 chr12 53939271 53939340 -90343149 - L1ME2 LINE L1 -58 6106 6037 2202 104 34 0 chr12 53939340 53939637 -90342852 + AluSx SINE Alu 1 307 -5 1967 127 0 50 chr12 53939946 53940268 -90342221 - AluSx SINE Alu -6 306 1 1890 149 28 0 chr12 53940279 53940561 -90341928 - AluJb SINE Alu -22 290 1 1251 232 26 7 chr12 53940561 53940863 -90341626 - AluJb SINE Alu -4 308 1 465 167 0 62 chr12 53940871 53940967 -90341522 - FLAM SINE Alu -16 127 38 2202 95 10 7 chr12 53941016 53941310 -90341179 - AluSp SINE Alu -18 295 1 1695 152 72 0 chr12 53942393 53942669 -90339820 - AluJo SINE Alu -11 301 6 789 145 0 8 chr12 53942796 53942913 -90339576 - FLAM_C SINE Alu -26 117 2 232 242 33 22 chr12 53942915 53943006 -90339483 - L1MC4a LINE L1 -1859 5949 5858 21 36 0 0 chr12 53943116 53943144 -90339345 + AT_rich Low_complexity Low_complexity 1 28 0 228 239 128 37 chr12 53943337 53943446 -90339043 - L3 LINE CR1 -294 1283 1165 2177 105 37 3 chr12 53943475 53943769 -90338720 + AluSg SINE Alu 1 304 -6 305 244 0 93 chr12 53943927 53944013 -90338476 - L2 LINE L2 -1 3271 3194 2060 96 37 4 chr12 53944121 53944421 -90338068 - AluY SINE Alu 0 309 1 21 0 0 0 chr12 53944704 53944725 -90337764 + GC_rich Low_complexity Low_complexity 1 21 0 22 88 0 0 chr12 53944762 53944819 -90337670 + GC_rich Low_complexity Low_complexity 1 57 0 504 279 12 15 chr12 53945219 53945423 -90337066 + G-rich Low_complexity Low_complexity 1 203 0 226 249 27 70 chr12 53945634 53945753 -90336736 + L1M4 LINE L1 3004 3114 -3032 1914 158 0 7 chr12 53945753 53946038 -90336451 - AluJb SINE Alu -29 283 1 226 249 27 70 chr12 53946038 53946103 -90336386 + L1M4 LINE L1 3114 3180 -2966 1039 202 0 0 chr12 53946288 53946481 -90336008 + AluJo SINE Alu 120 312 0 2165 125 0 0 chr12 53946584 53946880 -90335609 + AluSx SINE Alu 1 296 -16 2332 87 0 3 chr12 53946882 53947181 -90335308 + AluY SINE Alu 1 298 -13 330 186 48 25 chr12 53947593 53947686 -90334803 + MLT1E LTR MaLR 82 171 -371 802 152 0 0 chr12 53947955 53948067 -90334422 + FLAM_C SINE Alu 7 118 -25 1630 163 13 59 chr12 53948095 53948402 -90334087 + AluJo SINE Alu 1 293 -19 331 188 58 0 chr12 53948423 53948492 -90333997 + MIR SINE MIR 48 120 -142 563 202 9 9 chr12 53948514 53948628 -90333861 - AluJb SINE Alu 0 312 199 1791 138 30 32 chr12 53948878 53948965 -90333524 + L1MB3 LINE L1 5815 5901 -282 1486 124 9 0 chr12 53948965 53949183 -90333306 + AluSg/x SINE Alu 85 304 -8 1791 138 30 32 chr12 53949183 53949464 -90333025 + L1MB3 LINE L1 5901 6182 -1 890 236 87 101 chr12 53949464 53949522 -90332967 - L2 LINE L2 -95 3218 3161 2396 99 0 0 chr12 53949522 53949825 -90332664 + AluSg SINE Alu 1 303 -7 890 236 87 101 chr12 53949825 53950298 -90332191 - L2 LINE L2 -152 3161 2690 372 284 18 0 chr12 53950301 53950410 -90332079 - FRAM SINE Alu -12 154 44 293 272 0 0 chr12 53950842 53950923 -90331566 - AluJ/FLAM SINE Alu -220 82 2 263 244 78 136 chr12 53951018 53951156 -90331333 + L2 LINE L2 2465 2583 -731 2125 134 16 13 chr12 53951156 53951461 -90331028 + AluSx SINE Alu 1 306 -6 263 244 78 136 chr12 53951461 53951580 -90330909 + L2 LINE L2 2583 2707 -607 260 222 0 16 chr12 53951597 53951660 -90330829 - MLT1H1 LTR MaLR -163 392 331 1261 152 42 0 chr12 53952214 53952405 -90330084 + AluJo SINE Alu 96 294 -18 1251 210 16 16 chr12 53952416 53952673 -90329816 + AluJo SINE Alu 37 293 -19 2083 81 41 0 chr12 53953215 53953514 -90328975 + AluSx SINE Alu 1 310 0 313 244 0 93 chr12 53953622 53953708 -90328781 + L2 LINE L2 3194 3271 -1 2230 102 38 0 chr12 53953866 53954159 -90328330 - AluSg SINE Alu -6 304 1 1784 186 10 3 chr12 53954159 53954466 -90328023 - AluJb SINE Alu -3 309 1 465 167 0 62 chr12 53954474 53954570 -90327919 - FLAM SINE Alu -16 127 38 2202 95 10 7 chr12 53954619 53954913 -90327576 - AluSp SINE Alu -18 295 1 1697 160 71 0 chr12 53955996 53956277 -90326212 - AluJo SINE Alu -11 301 1 1528 148 23 59 chr12 53956524 53956827 -90325662 + Tigger3(Golem) DNA MER2_type 4 295 -2734 1979 154 0 26 chr12 53956834 53957146 -90325343 - AluSx SINE Alu -8 304 1 1884 168 27 0 chr12 53957147 53957445 -90325044 - AluJo SINE Alu -6 306 1 310 284 0 14 chr12 53958070 53958144 -90324345 + MER81 DNA DNA 42 114 0 2522 72 0 3 chr12 53958180 53958486 -90324003 - AluY SINE Alu -6 305 1 413 322 235 36 chr12 53958716 53959008 -90323481 + L2 LINE L2 1340 1573 -1741 2217 107 7 3 chr12 53959008 53959306 -90323183 - AluSg SINE Alu -11 299 1 413 322 235 36 chr12 53959306 53959382 -90323107 + L2 LINE L2 1573 1633 -1681 2080 160 0 0 chr12 53959382 53959689 -90322800 - AluJo SINE Alu -5 307 1 413 322 235 36 chr12 53959689 53960114 -90322375 + L2 LINE L2 1633 1972 -1342 1929 113 64 7 chr12 53960114 53960397 -90322092 + AluSx SINE Alu 1 299 -13 413 322 235 36 chr12 53960397 53960866 -90321623 + L2 LINE L2 1972 2856 -458 1018 193 58 42 chr12 53960894 53961006 -90321483 - MER58B DNA MER1_type -2079 341 232 2016 155 0 16 chr12 53961006 53961316 -90321173 + AluJb SINE Alu 1 305 -7 1018 193 58 42 chr12 53961316 53961462 -90321027 - MER58B DNA MER1_type -2188 232 79 1442 140 0 9 chr12 53961464 53961678 -90320811 + AluJb SINE Alu 85 296 -16 372 94 0 0 chr12 53961678 53961697 -90320792 + (CA)n Simple_repeat Simple_repeat 1 19 -361 2272 81 3 49 chr12 53961697 53962005 -90320484 + AluSg SINE Alu 1 294 -16 372 94 0 0 chr12 53962005 53962058 -90320431 + (CA)n Simple_repeat Simple_repeat 2 54 0 324 268 14 0 chr12 53962082 53962153 -90320336 - MER58B DNA MER1_type -251 90 19 603 332 66 76 chr12 53962164 53962574 -90319915 + L2 LINE L2 2866 3271 -1 886 151 0 0 chr12 53962587 53962726 -90319763 + FLAM_C SINE Alu 5 143 0 2436 72 3 3 chr12 53963022 53963315 -90319174 + AluSp SINE Alu 1 293 -20 207 271 0 34 chr12 53963387 53963446 -90319043 + L3 LINE CR1 1511 1567 -10 1083 72 20 13 chr12 53964130 53964282 -90318207 - AluSp/q SINE Alu 0 313 161 2013 89 44 0 chr12 53964580 53964878 -90317611 + AluSx SINE Alu 1 310 0 305 244 0 93 chr12 53964986 53965072 -90317417 + L2 LINE L2 3194 3271 -1 2230 102 38 0 chr12 53965230 53965523 -90316966 - AluSg SINE Alu -6 304 1 1784 186 10 3 chr12 53965523 53965830 -90316659 - AluJb SINE Alu -3 309 1 465 167 0 62 chr12 53965838 53965934 -90316555 - FLAM SINE Alu -16 127 38 2202 95 10 7 chr12 53965983 53966277 -90316212 - AluSp SINE Alu -18 295 1 1697 160 71 0 chr12 53967360 53967641 -90314848 - AluJo SINE Alu -11 301 1 3920 144 134 111 chr12 53967888 53968198 -90314291 + Tigger3b DNA MER2_type 4 305 -2723 1951 151 0 26 chr12 53968198 53968502 -90313987 - AluSx SINE Alu -8 304 9 3920 144 134 111 chr12 53968502 53968573 -90313916 + Tigger3b DNA MER2_type 305 373 -2655 2299 73 0 54 chr12 53968573 53968890 -90313599 + AluSg SINE Alu 1 300 -10 3920 144 134 111 chr12 53968890 53969319 -90313170 + Tigger3b DNA MER2_type 373 790 -2238 2452 85 7 0 chr12 53969319 53969625 -90312864 + AluSp SINE Alu 1 308 -5 3920 144 134 111 chr12 53969625 53970012 -90312477 + Tigger3b DNA MER2_type 790 1231 0 268 282 71 0 chr12 53970535 53970620 -90311869 - MIR3 SINE MIR -22 186 96 984 153 11 27 chr12 53970910 53971093 -90311396 + FAM SINE Alu 1 49 0 1967 133 40 0 chr12 53971218 53971518 -90310971 - AluSx SINE Alu 0 312 1 1636 142 11 11 chr12 53972441 53972708 -90309781 - AluJb SINE Alu -23 289 23 1097 167 0 0 chr12 53972753 53972921 -90309568 - FAM SINE Alu -7 168 1 2279 82 0 25 chr12 53972932 53973247 -90309242 - AluSq SINE Alu -6 307 1 2510 47 0 0 chr12 53973256 53973557 -90308932 - AluY SINE Alu -10 301 1 947 256 125 6 chr12 53973968 53974281 -90308208 + L2 LINE L2 2964 3313 0 259 272 101 83 chr12 53974262 53974358 -90308131 - L3 LINE CR1 -13 1564 1462 * 2193 84 3 10 chr12 53974358 53974654 -90307835 - AluSc SINE Alu -15 294 1 259 272 101 83 chr12 53974654 53974726 -90307763 - L3 LINE CR1 -115 1462 1393 329 307 60 33 chr12 53974761 53974911 -90307578 - L3 LINE CR1 -162 1415 1262 1818 155 0 3 chr12 53974939 53975242 -90307247 + AluJb SINE Alu 1 302 -10 557 202 79 9 chr12 53975330 53975444 -90307045 - AluJb SINE Alu -21 291 170 193 50 25 50 chr12 53975788 53975828 -90306661 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1852 117 12 52 chr12 53975841 53976165 -90306324 - AluSx SINE Alu -1 311 1 1958 80 0 67 chr12 53976281 53976388 -90306101 + AluSg SINE Alu 1 114 -197 2226 71 0 0 chr12 53976388 53976694 -90305795 + AluY SINE Alu 1 306 0 1958 80 0 67 chr12 53976694 53976916 -90305573 + AluSg SINE Alu 114 311 0 826 147 0 0 chr12 53977064 53977180 -90305309 + AluJ SINE Alu 2 117 -185 660 168 9 0 chr12 53977183 53977290 -90305199 + AluJ SINE Alu 186 293 -19 235 247 34 11 chr12 53978274 53978363 -90304126 + L1ME4a LINE L1 5946 6036 -85 2580 200 138 5 chr12 53978377 53978937 -90303552 - MER82 DNA MER2_type -18 635 2 2410 62 0 10 chr12 53979038 53979347 -90303142 - AluY SINE Alu -4 307 2 1198 286 51 42 chr12 53979376 53980023 -90302466 + L1ME3 LINE L1 5296 5948 -214 2302 92 0 0 chr12 53980023 53980326 -90302163 + AluSg SINE Alu 1 303 -7 1760 146 0 40 chr12 53980669 53980971 -90301518 - AluJo SINE Alu -12 300 11 2345 39 0 48 chr12 53981003 53981314 -90301175 + AluY SINE Alu 1 296 -15 450 0 0 0 chr12 53981314 53981364 -90301125 + (TA)n Simple_repeat Simple_repeat 2 51 0 2332 59 0 3 chr12 53981960 53982250 -90300239 + AluY SINE Alu 14 302 -9 223 387 97 41 chr12 53982359 53982628 -90299861 - L3b LINE CR1 -3 1580 1297 2082 111 3 0 chr12 53983020 53983317 -90299172 + AluY SINE Alu 2 299 -12 1665 125 72 18 chr12 53983696 53983824 -90298665 + AluSx SINE Alu 1 121 -191 2220 97 3 3 chr12 53983824 53984133 -90298356 + AluSc SINE Alu 1 309 0 1665 125 72 18 chr12 53984133 53984283 -90298206 + AluSx SINE Alu 121 294 -18 40 37 0 0 chr12 53984283 53984337 -90298152 + AT_rich Low_complexity Low_complexity 1 54 0 1973 123 0 20 chr12 53984519 53984821 -90297668 + AluSx SINE Alu 1 296 -16 1907 151 3 0 chr12 53985565 53985870 -90296619 - AluSx SINE Alu -6 306 1 211 143 24 0 chr12 53985988 53986030 -90296459 + (TA)n Simple_repeat Simple_repeat 2 44 0 288 303 30 0 chr12 53986133 53986232 -90296257 + MIR SINE MIR 34 135 -73 783 264 16 145 chr12 53986413 53986671 -90295818 - L3 LINE CR1 -13 1564 1387 2129 107 10 0 chr12 53986671 53986980 -90295509 + AluSx SINE Alu 1 312 0 783 264 16 145 chr12 53986980 53987168 -90295321 - L3 LINE CR1 -190 1387 1176 1590 161 23 16 chr12 53987237 53987542 -90294947 - AluJb SINE Alu -5 307 1 501 315 222 24 chr12 53989538 53989695 -90292794 - L3 LINE CR1 -48 1529 1404 1897 142 0 16 chr12 53989695 53989998 -90292491 + AluSx SINE Alu 1 298 -14 501 315 222 24 chr12 53989998 53990173 -90292316 - L3 LINE CR1 -173 1404 1131 2234 86 0 6 chr12 53990467 53990780 -90291709 + AluY SINE Alu 1 311 0 1709 94 4 0 chr12 53990787 53991021 -90291468 + AluSq SINE Alu 1 235 -78 34 0 0 0 chr12 53991036 53991070 -90291419 + AT_rich Low_complexity Low_complexity 1 34 0 2175 119 0 0 chr12 53991076 53991386 -90291103 + AluSg SINE Alu 1 310 0 2267 81 0 10 chr12 53991555 53991862 -90290627 - AluY SINE Alu -1 310 7 1862 140 3 0 chr12 53992077 53992362 -90290127 + AluSx SINE Alu 1 286 -26 299 284 69 26 chr12 53992380 53992496 -90289993 - L2 LINE L2 -1339 1975 1855 2152 107 0 0 chr12 53992735 53993033 -90289456 + AluSg SINE Alu 1 298 -12 2149 100 0 7 chr12 53993158 53993457 -90289032 + AluSq SINE Alu 1 297 -16 222 204 0 0 chr12 53993859 53993903 -90288586 - L3b LINE CR1 -367 1216 1173 285 240 413 0 chr12 53993934 53994055 -90288434 + MIR3 SINE MIR 33 203 -5 1051 83 0 0 chr12 53994569 53994701 -90287788 + AluSq/x SINE Alu 1 132 -181 811 136 0 0 chr12 53994885 53995003 -90287486 + FLAM_C SINE Alu 16 133 -10 521 242 57 0 chr12 53995079 53995203 -90287286 + L2 LINE L2 3138 3268 -4 725 142 83 17 chr12 53995287 53995407 -90287082 - FLAM_C SINE Alu -4 129 2 1060 213 104 27 chr12 53995806 53996230 -90286259 + L1MC5 LINE L1 7246 7664 -297 388 286 33 103 chr12 53996241 53996454 -90286035 + L1ME4a LINE L1 5811 6008 -113 1592 185 41 0 chr12 53996489 53996781 -90285708 - AluJb SINE Alu -8 304 1 586 103 0 0 chr12 53996830 53996908 -90285581 - AluJo SINE Alu -13 299 222 817 165 82 6 chr12 53996910 53997068 -90285421 - AluJo SINE Alu -138 174 5 1818 160 0 3 chr12 53997125 53997413 -90285076 - AluJo SINE Alu -25 287 1 827 183 28 70 chr12 53997435 53997506 -90284983 + L1MC5 LINE L1 7658 7730 -231 2352 84 0 0 chr12 53997506 53997804 -90284685 - AluSx SINE Alu -14 298 1 827 183 28 70 chr12 53997804 53997827 -90284662 + L1MC5 LINE L1 7730 7752 -209 2738 121 14 22 chr12 53997827 53998273 -90284216 + MER65A LTR ERV1 1 442 -3 827 183 28 70 chr12 53998273 53998462 -90284027 + L1MC5 LINE L1 7752 7930 -31 29 28 0 0 chr12 53998616 53998652 -90283837 + AT_rich Low_complexity Low_complexity 1 36 0 1586 115 0 21 chr12 53998683 53998917 -90283572 + AluSx SINE Alu 1 229 -83 497 118 0 11 chr12 53998917 53999010 -90283479 + (GGAA)n Simple_repeat Simple_repeat 4 95 0 2165 109 0 6 chr12 53999062 53999373 -90283116 - AluSq SINE Alu -4 309 1 475 234 47 0 chr12 53999374 53999502 -90282987 + L1MA10 LINE L1 6201 6334 0 1330 138 14 5 chr12 53999656 53999873 -90282616 - AluSg/x SINE Alu -7 303 85 2223 89 0 3 chr12 53999900 54000193 -90282296 + AluSg SINE Alu 1 292 -18 1404 174 14 14 chr12 54000204 54000479 -90282010 + AluJo SINE Alu 37 311 -1 2104 103 0 44 chr12 54000628 54000772 -90281717 + AluSc SINE Alu 1 150 -159 2451 47 0 3 chr12 54000772 54001070 -90281419 + AluY SINE Alu 1 297 -14 2104 103 0 44 chr12 54001070 54001246 -90281243 + AluSc SINE Alu 150 307 -2 2073 119 0 0 chr12 54002096 54002389 -90280100 + AluSx SINE Alu 1 293 -19 21 0 0 0 chr12 54002405 54002426 -90280063 + AT_rich Low_complexity Low_complexity 1 21 0 2213 93 0 7 chr12 54002432 54002734 -90279755 + AluSx SINE Alu 1 300 -12 2112 123 0 0 chr12 54002764 54003073 -90279416 - AluSc SINE Alu 0 309 1 1806 83 10 53 chr12 54003092 54003143 -90279346 - L1MA1 LINE L1 -1 6301 6249 2203 82 34 0 chr12 54003143 54003435 -90279054 - AluY SINE Alu -9 302 1 1806 83 10 53 chr12 54003435 54003683 -90278806 - L1MA1 LINE L1 -53 6249 6015 1311 151 100 23 chr12 54003692 54003951 -90278538 - AluJb SINE Alu -18 294 16 2091 104 0 3 chr12 54003956 54004253 -90278236 - AluSx SINE Alu -12 300 5 2076 81 50 0 chr12 54004384 54004667 -90277822 - AluSg SINE Alu -13 297 1 1800 111 26 0 chr12 54005048 54005318 -90277171 - AluSq SINE Alu -8 305 29 525 204 150 54 chr12 54005632 54005799 -90276690 - MIR SINE MIR 0 262 80 405 241 125 30 chr12 54005956 54006127 -90276362 - MIR SINE MIR -6 202 13 236 75 0 25 chr12 54006936 54006976 -90275513 + (CGGGGG)n Simple_repeat Simple_repeat 3 41 0 21 36 0 0 chr12 54007028 54007056 -90275433 + GC_rich Low_complexity Low_complexity 1 28 0 614 192 0 25 chr12 54007972 54008092 -90274397 + AluJo/FLAM SINE Alu 17 133 -179 1977 99 25 7 chr12 54008092 54008375 -90274114 + AluSx SINE Alu 1 288 -24 296 62 0 42 chr12 54008376 54008424 -90274065 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 572 247 68 0 chr12 54008586 54008732 -90273757 + MIR SINE MIR 105 260 -2 1703 171 0 7 chr12 54009187 54009486 -90273003 + AluJb SINE Alu 1 297 -15 1850 131 0 14 chr12 54009838 54010129 -90272360 - AluSx SINE Alu -5 307 21 4573 146 62 39 chr12 54010144 54010224 -90272265 - L1MB3 LINE L1 -1 6182 6105 2206 171 130 65 chr12 54010224 54010885 -90271604 - MER44D DNA MER2_type -1 704 1 2315 47 0 0 chr12 54010885 54011161 -90271328 - AluY SINE Alu -15 296 21 4573 146 62 39 chr12 54011161 54011985 -90270504 - L1MB3 LINE L1 -77 6106 5256 2134 110 3 3 chr12 54012024 54012332 -90270157 - AluSx SINE Alu -4 308 1 1440 197 30 7 chr12 54012332 54012631 -90269858 - AluJo SINE Alu -6 306 1 1213 127 6 137 chr12 54012911 54013225 -90269264 + ORSL DNA AcHobo 2 274 -1 605 165 0 0 chr12 54013384 54013475 -90269014 - FLAM_C SINE Alu -16 127 37 479 234 44 122 chr12 54013490 54013575 -90268914 - MIR SINE MIR -72 190 100 2156 118 0 0 chr12 54013575 54013872 -90268617 - AluSq SINE Alu -7 306 10 479 234 44 122 chr12 54013872 54013991 -90268498 - MIR SINE MIR -162 100 2 1882 155 7 3 chr12 54014475 54014784 -90267705 - AluJb SINE Alu -2 310 1 784 185 28 73 chr12 54014806 54014877 -90267612 + L1MC5 LINE L1 7658 7731 -230 2352 84 0 0 chr12 54014877 54015175 -90267314 - AluSx SINE Alu -14 298 1 784 185 28 73 chr12 54015175 54015198 -90267291 + L1MC5 LINE L1 7731 7753 -208 2738 121 14 22 chr12 54015198 54015644 -90266845 + MER65A LTR ERV1 1 442 -3 784 185 28 73 chr12 54015644 54015834 -90266655 + L1MC5 LINE L1 7753 7930 -31 29 28 0 0 chr12 54015988 54016024 -90266465 + AT_rich Low_complexity Low_complexity 1 36 0 2127 114 7 3 chr12 54016055 54016362 -90266127 + AluSp SINE Alu 1 308 -5 2233 117 183 0 chr12 54016372 54016749 -90265740 + Tigger3(Golem) DNA MER2_type 2584 3029 0 234 204 41 0 chr12 54017309 54017358 -90265131 - MIR SINE MIR -62 146 96 984 153 11 27 chr12 54017648 54017831 -90264658 + FAM SINE Alu 1 49 0 1967 133 40 0 chr12 54017956 54018256 -90264233 - AluSx SINE Alu 0 312 1 1595 141 11 19 chr12 54019179 54019448 -90263041 - AluJb SINE Alu -23 289 23 1105 157 0 0 chr12 54019493 54019659 -90262830 - FAM SINE Alu -7 168 3 2126 80 13 35 chr12 54019672 54019986 -90262503 - AluSq SINE Alu -6 307 1 2450 53 0 0 chr12 54019995 54020296 -90262193 - AluY SINE Alu -10 301 1 950 256 125 6 chr12 54020707 54021020 -90261469 + L2 LINE L2 2964 3313 0 2098 107 31 7 chr12 54021097 54021388 -90261101 - AluSp SINE Alu -15 298 1 998 132 0 0 chr12 54021388 54021524 -90260965 - AluSq/x SINE Alu -177 136 1 204 342 34 84 chr12 54021608 54021845 -90260644 + L2 LINE L2 3010 3234 -38 2012 145 0 16 chr12 54022152 54022455 -90260034 + AluSx SINE Alu 1 298 -14 315 286 223 23 chr12 54022455 54022630 -90259859 - L3 LINE CR1 -237 1340 1131 2384 86 0 6 chr12 54022924 54023237 -90259252 + AluY SINE Alu 1 311 0 1819 94 4 0 chr12 54023244 54023478 -90259011 + AluSq SINE Alu 1 235 -78 34 0 0 0 chr12 54023493 54023527 -90258962 + AT_rich Low_complexity Low_complexity 1 34 0 2328 119 0 0 chr12 54023533 54023843 -90258646 + AluSg SINE Alu 1 310 0 1817 137 7 18 chr12 54024367 54024701 -90257788 - AluSg SINE Alu 0 331 1 700 255 36 12 chr12 54024720 54024971 -90257518 - AluY SINE Alu -18 293 37 1936 111 26 0 chr12 54025301 54025571 -90256918 + AluSq SINE Alu 29 305 -8 2212 81 50 0 chr12 54025952 54026235 -90256254 + AluSg SINE Alu 1 297 -13 2233 104 0 3 chr12 54026366 54026663 -90255826 + AluSx SINE Alu 5 300 -12 1386 150 91 56 chr12 54026668 54026936 -90255553 + AluJb SINE Alu 16 296 -16 1744 90 10 53 chr12 54026936 54027184 -90255305 + L1MA1 LINE L1 6015 6249 -53 2288 89 38 0 chr12 54027184 54027475 -90255014 + AluY SINE Alu 1 302 -9 1744 90 10 53 chr12 54027475 54027526 -90254963 + L1MA1 LINE L1 6249 6301 -1 1386 150 91 56 chr12 54027526 54027543 -90254946 + AluJb SINE Alu 296 311 -1 2225 117 3 0 chr12 54027545 54027854 -90254635 + AluY SINE Alu 1 310 -1 2220 105 10 0 chr12 54028097 54028392 -90254097 - AluSx SINE Alu -9 303 6 548 306 57 44 chr12 54028447 54028695 -90253794 + MIR SINE MIR 12 262 0 361 222 33 0 chr12 54029484 54029574 -90252915 + L1MC4 LINE L1 7928 8020 -22 1479 157 25 4 chr12 54029812 54030047 -90252442 - AluSg/x SINE Alu -1 311 72 771 138 0 0 chr12 54030047 54030156 -90252333 - AluSq/x SINE Alu -203 110 2 26 50 0 0 chr12 54030452 54030492 -90251997 + AT_rich Low_complexity Low_complexity 1 40 0 273 29 0 0 chr12 54030774 54030808 -90251681 + (CA)n Simple_repeat Simple_repeat 2 35 0 2480 70 3 0 chr12 54031236 54031536 -90250953 - AluSp SINE Alu -12 301 1 187 279 33 16 chr12 54032051 54032112 -90250377 - MIR SINE MIR -56 152 91 767 218 53 12 chr12 54032224 54032394 -90250095 - AluJb SINE Alu 0 312 136 2115 94 22 0 chr12 54034505 54034821 -90247668 + AluSx SINE Alu 1 322 0 242 310 70 40 chr12 54035281 54035381 -90247108 - L2 LINE L2 -12 3260 3158 1770 178 3 3 chr12 54035390 54035688 -90246801 + AluJo SINE Alu 1 298 -14 1249 148 172 16 chr12 54035827 54036096 -90246393 - AluJb SINE Alu 0 307 1 330 288 174 15 chr12 54036390 54036522 -90245967 - MIR3 SINE MIR -3 205 53 207 274 24 12 chr12 54036880 54036964 -90245525 + CT-rich Low_complexity Low_complexity 4 88 0 721 174 0 8 chr12 54036980 54037101 -90245388 - AluSg/x SINE Alu -9 303 184 2267 118 3 0 chr12 54037270 54037576 -90244913 + AluSp SINE Alu 1 307 -6 1806 145 7 11 chr12 54037612 54037895 -90244594 - AluJb SINE Alu -18 294 13 2491 64 0 10 chr12 54037913 54038225 -90244264 - AluY SINE Alu -2 309 1 216 350 138 31 chr12 54038684 54038938 -90243551 + L2 LINE L2 2399 2679 -635 185 225 0 0 chr12 54038922 54038962 -90243527 - L2 LINE L2 0 3313 3274 * 1945 112 33 43 chr12 54038962 54039267 -90243222 + AluSx SINE Alu 1 302 -10 2357 84 3 0 chr12 54039610 54039929 -90242560 - AluSp SINE Alu 0 320 1 2079 108 50 10 chr12 54040139 54040424 -90242065 + AluSx SINE Alu 1 300 -12 207 0 0 0 chr12 54040424 54040447 -90242042 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2079 108 50 10 chr12 54040447 54040458 -90242031 + AluSx SINE Alu 300 309 -3 2447 84 0 0 chr12 54040458 54040767 -90241722 + AluY SINE Alu 1 309 -2 2220 105 10 0 chr12 54041010 54041305 -90241184 - AluSx SINE Alu -9 303 6 548 306 57 44 chr12 54041360 54041608 -90240881 + MIR SINE MIR 12 262 0 361 222 33 0 chr12 54042397 54042487 -90240002 + L1MC4 LINE L1 7928 8020 -22 1479 157 25 4 chr12 54042725 54042960 -90239529 - AluSg/x SINE Alu -1 311 72 771 138 0 0 chr12 54042960 54043069 -90239420 - AluSq/x SINE Alu -202 110 2 26 50 0 0 chr12 54043365 54043405 -90239084 + AT_rich Low_complexity Low_complexity 1 40 0 273 29 0 0 chr12 54043687 54043721 -90238768 + (CA)n Simple_repeat Simple_repeat 2 35 0 2480 70 3 0 chr12 54044149 54044449 -90238040 - AluSp SINE Alu -12 301 1 289 254 16 0 chr12 54044963 54045026 -90237463 - MIR SINE MIR -56 152 89 782 212 53 12 chr12 54045137 54045307 -90237182 - AluJb SINE Alu 0 312 136 2115 94 22 0 chr12 54047418 54047734 -90234755 + AluSx SINE Alu 1 322 0 242 310 70 40 chr12 54048194 54048294 -90234195 - L2 LINE L2 -12 3260 3158 1770 178 3 3 chr12 54048303 54048601 -90233888 + AluJo SINE Alu 1 298 -14 1249 148 172 16 chr12 54048740 54049009 -90233480 - AluJb SINE Alu 0 307 1 330 288 174 15 chr12 54049303 54049435 -90233054 - MIR3 SINE MIR -3 205 53 207 274 24 12 chr12 54049793 54049877 -90232612 + CT-rich Low_complexity Low_complexity 4 88 0 760 171 24 0 chr12 54049893 54050016 -90232473 - AluSg/x SINE Alu -9 300 175 2241 120 0 0 chr12 54050218 54050517 -90231972 - AluSg SINE Alu -11 299 1 1079 87 0 0 chr12 54050529 54050667 -90231822 - AluSp/q SINE Alu -8 305 168 2042 56 15 0 chr12 54050879 54051145 -90231344 - MER1A DNA MER1_type 0 529 260 2199 110 20 10 chr12 54051725 54052024 -90230465 + AluSx SINE Alu 1 302 -10 1478 232 128 57 chr12 54053144 54053439 -90229050 + HAL1 LINE L1 586 859 -1648 2625 47 0 0 chr12 54053439 54053738 -90228751 + AluY SINE Alu 1 299 -12 1478 232 128 57 chr12 54053738 54053857 -90228632 + HAL1 LINE L1 859 968 -1539 2245 102 13 13 chr12 54053857 54054162 -90228327 + AluSx SINE Alu 1 305 -7 1478 232 128 57 chr12 54054162 54054495 -90227994 + HAL1 LINE L1 968 1387 -1120 510 211 142 103 chr12 54054537 54054656 -90227833 + HAL1 LINE L1 1971 2084 -423 1807 157 0 33 chr12 54054656 54054955 -90227534 + AluJo SINE Alu 11 299 -13 510 211 142 103 chr12 54054955 54055251 -90227238 + HAL1 LINE L1 2084 2402 -105 1980 125 29 26 chr12 54055333 54055644 -90226845 + AluSx SINE Alu 1 312 0 1011 166 0 0 chr12 54055690 54055847 -90226642 - AluSg/x SINE Alu -22 288 132 2242 121 3 0 chr12 54055847 54056144 -90226345 - AluSq SINE Alu -15 298 1 1909 164 27 0 chr12 54056145 54056443 -90226046 - AluJo SINE Alu -6 306 1 310 284 0 14 chr12 54057068 54057142 -90225347 + MER81 DNA DNA 42 114 0 2522 72 0 3 chr12 54057178 54057484 -90225005 - AluY SINE Alu -6 305 1 413 322 235 36 chr12 54057714 54058006 -90224483 + L2 LINE L2 1340 1573 -1741 2217 107 7 3 chr12 54058006 54058304 -90224185 - AluSg SINE Alu -11 299 1 413 322 235 36 chr12 54058304 54058380 -90224109 + L2 LINE L2 1573 1633 -1681 2080 160 0 0 chr12 54058380 54058687 -90223802 - AluJo SINE Alu -5 307 1 413 322 235 36 chr12 54058687 54059112 -90223377 + L2 LINE L2 1633 1972 -1342 1964 113 64 3 chr12 54059112 54059394 -90223095 + AluSx SINE Alu 1 299 -13 413 322 235 36 chr12 54059394 54059863 -90222626 + L2 LINE L2 1972 2856 -458 1030 189 58 42 chr12 54059891 54060003 -90222486 - MER58B DNA MER1_type -2079 341 232 2016 155 0 16 chr12 54060003 54060313 -90222176 + AluJb SINE Alu 1 305 -7 1030 189 58 42 chr12 54060313 54060459 -90222030 - MER58B DNA MER1_type -2188 232 79 1442 140 0 9 chr12 54060461 54060675 -90221814 + AluJb SINE Alu 85 296 -16 372 94 0 0 chr12 54060675 54060694 -90221795 + (CA)n Simple_repeat Simple_repeat 1 19 -361 2272 81 3 49 chr12 54060694 54061002 -90221487 + AluSg SINE Alu 1 294 -16 372 94 0 0 chr12 54061002 54061055 -90221434 + (CA)n Simple_repeat Simple_repeat 2 54 0 324 268 14 0 chr12 54061079 54061150 -90221339 - MER58B DNA MER1_type -251 90 19 603 332 66 76 chr12 54061161 54061571 -90220918 + L2 LINE L2 2866 3271 -1 886 151 0 0 chr12 54061584 54061723 -90220766 + FLAM_C SINE Alu 5 143 0 2436 72 3 3 chr12 54062019 54062312 -90220177 + AluSp SINE Alu 1 293 -20 207 271 0 34 chr12 54062384 54062443 -90220046 + L3 LINE CR1 1511 1567 -10 1819 80 4 0 chr12 54063127 54063353 -90219136 - AluSp SINE Alu 0 313 87 450 147 0 0 chr12 54063354 54063422 -90219067 - FRAM/FAM SINE Alu -111 65 1 268 200 0 0 chr12 54063427 54063472 -90219017 + MIR SINE MIR 104 148 -60 1634 159 107 4 chr12 54063474 54063744 -90218745 + AluJo SINE Alu 1 298 -14 1925 116 48 31 chr12 54064793 54065085 -90217404 - AluSx SINE Alu -15 297 1 908 146 0 0 chr12 54065563 54065693 -90216796 - FLAM_A SINE Alu -2 131 2 1094 157 62 6 chr12 54065960 54066138 -90216351 + MER5A DNA MER1_type 2 189 0 538 288 162 5 chr12 54066168 54066359 -90216130 - MIR SINE MIR -35 227 7 831 136 0 38 chr12 54066663 54066795 -90215694 + FLAM_C SINE Alu 1 127 -16 576 270 32 21 chr12 54066878 54067067 -90215422 + MER117 DNA MER1_type 2 192 -5 2176 105 0 0 chr12 54067161 54067438 -90215051 + AluSc SINE Alu 1 277 -32 2471 84 0 0 chr12 54067593 54067889 -90214600 + AluSq SINE Alu 1 296 -17 204 237 0 0 chr12 54068139 54068177 -90214312 + (TG)n Simple_repeat Simple_repeat 1 38 0 1910 77 88 11 chr12 54070177 54070308 -90212181 + AluSc SINE Alu 1 120 -209 2478 68 0 7 chr12 54070308 54070618 -90211871 + AluY SINE Alu 1 308 -3 1910 77 88 11 chr12 54070618 54070795 -90211694 + AluSc SINE Alu 120 329 0 1825 88 0 57 chr12 54071341 54071604 -90210885 + AluSx SINE Alu 54 301 -11 547 93 12 12 chr12 54071805 54071891 -90210598 - AluS SINE Alu -226 86 1 349 43 0 0 chr12 54072268 54072314 -90210175 + (TTTA)n Simple_repeat Simple_repeat 2 152 0 2116 99 3 11 chr12 54072314 54072597 -90209892 - AluSc SINE Alu -1 326 1 921 102 47 0 chr12 54072597 54072725 -90209764 - AluSq/x SINE Alu -179 134 1 2227 111 3 0 chr12 54073104 54073401 -90209088 - AluY SINE Alu -12 299 2 2474 59 0 3 chr12 54074172 54074462 -90208027 - AluY SINE Alu -9 302 14 542 132 0 0 chr12 54075018 54075094 -90207395 - AluS SINE Alu -236 77 2 2194 125 0 0 chr12 54075139 54075434 -90207055 - AluSx SINE Alu -17 295 1 1269 131 0 0 chr12 54076284 54076460 -90206029 - AluSc SINE Alu -2 307 132 2376 61 7 10 chr12 54076460 54076753 -90205736 - AluY SINE Alu -14 297 6 548 306 57 44 chr12 54076808 54077056 -90205433 + MIR SINE MIR 12 262 0 361 222 33 0 chr12 54077845 54077935 -90204554 + L1MC4 LINE L1 7928 8020 -22 1500 153 25 4 chr12 54078173 54078408 -90204081 - AluSg/x SINE Alu -1 311 72 771 138 0 0 chr12 54078408 54078517 -90203972 - AluSq/x SINE Alu -203 110 2 26 50 0 0 chr12 54078813 54078853 -90203636 + AT_rich Low_complexity Low_complexity 1 40 0 273 29 0 0 chr12 54079135 54079169 -90203320 + (CA)n Simple_repeat Simple_repeat 2 35 0 2480 70 3 0 chr12 54079597 54079897 -90202592 - AluSp SINE Alu -12 301 1 289 254 16 0 chr12 54080411 54080474 -90202015 - MIR SINE MIR -56 152 89 782 212 53 12 chr12 54080585 54080755 -90201734 - AluJb SINE Alu 0 312 136 2115 94 22 0 chr12 54082867 54083183 -90199306 + AluSx SINE Alu 1 322 0 242 310 70 40 chr12 54083643 54083743 -90198746 - L2 LINE L2 -12 3260 3158 1770 178 3 3 chr12 54083752 54084050 -90198439 + AluJo SINE Alu 1 298 -14 1249 148 172 16 chr12 54084189 54084458 -90198031 - AluJb SINE Alu 0 307 1 280 311 174 15 chr12 54084752 54084884 -90197605 - MIR3 SINE MIR -3 205 53 207 274 24 12 chr12 54085241 54085325 -90197164 + CT-rich Low_complexity Low_complexity 4 88 0 760 171 24 0 chr12 54085341 54085464 -90197025 - AluSg/x SINE Alu -9 300 175 2241 120 0 0 chr12 54085666 54085965 -90196524 - AluSg SINE Alu -11 299 1 1079 87 0 0 chr12 54085977 54086115 -90196374 - AluSp/q SINE Alu -8 305 168 2042 56 15 0 chr12 54086327 54086593 -90195896 - MER1A DNA MER1_type 0 529 260 2199 110 20 10 chr12 54087173 54087472 -90195017 + AluSx SINE Alu 1 302 -10 1478 232 128 57 chr12 54088593 54088888 -90193601 + HAL1 LINE L1 586 859 -1648 2625 47 0 0 chr12 54088888 54089187 -90193302 + AluY SINE Alu 1 299 -12 1478 232 128 57 chr12 54089187 54089306 -90193183 + HAL1 LINE L1 859 968 -1539 2245 102 13 13 chr12 54089306 54089611 -90192878 + AluSx SINE Alu 1 305 -7 1478 232 128 57 chr12 54089611 54089944 -90192545 + HAL1 LINE L1 968 1387 -1120 510 211 142 103 chr12 54089986 54090105 -90192384 + HAL1 LINE L1 1971 2084 -423 1807 157 0 33 chr12 54090105 54090404 -90192085 + AluJo SINE Alu 11 299 -13 510 211 142 103 chr12 54090404 54090700 -90191789 + HAL1 LINE L1 2084 2402 -105 1980 125 29 26 chr12 54090782 54091093 -90191396 + AluSx SINE Alu 1 312 0 1964 142 0 17 chr12 54091139 54091434 -90191055 - AluSx SINE Alu -22 290 1 355 340 32 26 chr12 54091435 54091591 -90190898 + L3 LINE CR1 1373 1529 -48 1740 161 23 16 chr12 54093584 54093889 -90188600 + AluJb SINE Alu 1 307 -5 758 264 16 145 chr12 54093958 54094146 -90188343 + L3 LINE CR1 1176 1274 -303 2276 107 10 0 chr12 54094146 54094455 -90188034 - AluSx SINE Alu 0 312 1 758 264 16 145 chr12 54094455 54094713 -90187776 + L3 LINE CR1 1274 1564 -13 298 303 30 0 chr12 54094894 54094993 -90187496 - MIR SINE MIR -73 135 34 211 143 24 0 chr12 54095096 54095138 -90187351 + (TA)n Simple_repeat Simple_repeat 1 43 0 2053 155 3 0 chr12 54095256 54095566 -90186923 + AluSx SINE Alu 1 311 -1 2121 123 0 20 chr12 54096305 54096607 -90185882 - AluSx SINE Alu -16 296 1 499 319 75 40 chr12 54096741 54096843 -90185646 - L1M4 LINE L1 -1474 4672 4575 1190 166 46 145 chr12 54096843 54097168 -90185321 - AluJo SINE Alu -8 294 2 499 319 75 40 chr12 54097168 54097491 -90184998 - L1M4 LINE L1 -1571 4575 4232 1519 214 40 10 chr12 54097782 54098085 -90184404 - AluJb SINE Alu 0 312 1 592 103 0 0 chr12 54098134 54098212 -90184277 - AluJo SINE Alu -13 299 222 822 173 80 6 chr12 54098214 54098376 -90184113 - AluJo SINE Alu -138 174 1 1972 172 0 3 chr12 54098409 54098717 -90183772 - AluJo SINE Alu -5 307 1 255 141 28 0 chr12 54098739 54098810 -90183679 + L1MC5 LINE L1 7658 7730 -231 2261 97 7 7 chr12 54098810 54099108 -90183381 - AluSx SINE Alu -14 298 1 410 314 32 39 chr12 54099209 54099399 -90183090 + MIR SINE MIR 9 196 -63 2262 128 0 0 chr12 54099501 54099806 -90182683 - AluSq SINE Alu -8 305 1 1690 165 19 56 chr12 54099878 54100199 -90182290 - AluJb SINE Alu -3 309 1 403 345 48 35 chr12 54101106 54101335 -90181154 + MIR SINE MIR 2 233 -29 2232 121 3 0 chr12 54101598 54101903 -90180586 - AluSg SINE Alu -4 306 1 339 200 13 40 chr12 54102274 54102349 -90180140 + L1MCa LINE L1 2003 2075 -4351 978 102 0 8 chr12 54102350 54102477 -90180012 - FLAM_C SINE Alu -7 126 1 1885 161 6 19 chr12 54102484 54102795 -90179694 - AluJo SINE Alu 0 312 6 199 254 102 0 chr12 54103333 54103392 -90179097 + L2 LINE L2 3122 3186 -86 1530 138 5 0 chr12 54103913 54104131 -90178358 - AluJb SINE Alu -93 219 1 1722 185 31 0 chr12 54104216 54104527 -90177962 + AluJb SINE Alu 1 312 0 261 262 32 71 chr12 54104531 54104657 -90177832 + L1MC/D LINE L1 5688 5808 -2000 819 172 0 0 chr12 54104657 54104785 -90177704 - AluJb SINE Alu -16 296 169 1538 112 0 0 chr12 54104868 54105065 -90177424 - AluSg/x SINE Alu -31 281 85 2001 139 27 3 chr12 54105364 54105665 -90176824 - AluSx SINE Alu -4 308 1 803 194 239 0 chr12 54106093 54106315 -90176174 - ORSL DNA AcHobo 0 275 1 250 355 103 32 chr12 54106336 54106713 -90175776 + L2 LINE L2 2863 3266 -6 376 259 53 23 chr12 54107273 54107404 -90175085 + MIR3 SINE MIR 47 181 -27 2354 109 0 0 chr12 54107614 54107917 -90174572 - AluSq SINE Alu -10 303 1 410 314 32 39 chr12 54108018 54108208 -90174281 + MIR SINE MIR 9 196 -63 2262 128 0 0 chr12 54108310 54108615 -90173874 - AluSq SINE Alu -8 305 1 1690 165 19 56 chr12 54108687 54109008 -90173481 - AluJb SINE Alu -3 309 1 403 345 48 35 chr12 54109915 54110144 -90172345 + MIR SINE MIR 2 233 -29 2232 121 3 0 chr12 54110407 54110712 -90171777 - AluSg SINE Alu -4 306 1 339 200 13 40 chr12 54111083 54111158 -90171331 + L1MCa LINE L1 2003 2075 -4351 978 102 0 8 chr12 54111159 54111286 -90171203 - FLAM_C SINE Alu -7 126 1 1885 161 6 19 chr12 54111293 54111604 -90170885 - AluJo SINE Alu 0 312 6 199 254 102 0 chr12 54112142 54112201 -90170288 + L2 LINE L2 3122 3186 -86 914 183 80 0 chr12 54112699 54112874 -90169615 + MER5A DNA MER1_type 1 189 0 2404 94 0 0 chr12 54113247 54113546 -90168943 - AluSx SINE Alu -13 299 1 197 364 13 0 chr12 54114952 54115029 -90167460 - MIR SINE MIR 0 262 185 213 336 106 9 chr12 54116015 54116128 -90166361 - L2 LINE L2 0 3272 3149 752 181 0 36 chr12 54117809 54117947 -90164542 - FLAM_A SINE Alu 0 133 1 782 228 35 5 chr12 54118327 54118524 -90163965 + MER58C DNA MER1_type 1 203 -12 269 225 56 0 chr12 54118708 54118779 -90163710 + MIR SINE MIR 173 247 -15 393 301 153 20 chr12 54118790 54118986 -90163503 + MIR SINE MIR 10 231 -31 293 238 0 89 chr12 54119748 54119849 -90162640 - MIR SINE MIR -54 208 117 2163 137 0 0 chr12 54120864 54121163 -90161326 - AluSx SINE Alu -13 299 1 204 342 34 84 chr12 54121470 54121707 -90160782 - L2 LINE L2 -38 3234 3010 2101 134 3 13 chr12 54121791 54121927 -90160562 + AluSx SINE Alu 1 137 -175 2305 99 23 0 chr12 54121927 54122231 -90160258 + AluSp SINE Alu 1 311 -2 2101 134 3 13 chr12 54122231 54122250 -90160239 + AluSx SINE Alu 137 304 -8 1026 139 7 0 chr12 54122250 54122401 -90160088 + AluSg/x SINE Alu 153 304 -8 351 224 116 82 chr12 54122766 54122913 -90159576 - MIR SINE MIR -71 191 40 28 0 0 0 chr12 54122961 54122989 -90159500 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 54123074 54123097 -90159392 + AT_rich Low_complexity Low_complexity 1 23 0 2268 123 0 3 chr12 54123341 54123651 -90158838 - AluSx SINE Alu -3 309 1 188 304 18 18 chr12 54123847 54123903 -90158586 - L2 LINE L2 -3 3310 3255 503 269 71 47 chr12 54124567 54124905 -90157584 + L2 LINE L2 2298 2726 -588 2717 125 51 17 chr12 54124951 54125208 -90157281 + L1MB3 LINE L1 5567 5849 -334 1960 101 83 0 chr12 54125208 54125485 -90157004 + AluSp SINE Alu 1 300 -13 2717 125 51 17 chr12 54125485 54125699 -90156790 + L1MB3 LINE L1 5849 6054 -129 571 150 212 18 chr12 54125709 54125822 -90156667 + FLAM_C SINE Alu 2 136 -7 400 226 49 0 chr12 54125822 54125924 -90156565 + L1MB2 LINE L1 6055 6161 -10 353 245 95 100 chr12 54125935 54126000 -90156489 + L2 LINE L2 2771 2835 -479 2131 102 7 3 chr12 54126000 54126328 -90156161 - AluSq SINE Alu 0 329 1 353 245 95 100 chr12 54126328 54126461 -90156028 + L2 LINE L2 2835 2969 -345 1974 152 7 3 chr12 54127154 54127450 -90155039 - AluJb SINE Alu -11 301 5 2670 98 5 15 chr12 54127780 54128180 -90154309 + THE1C-int LTR MaLR 1185 1580 0 1986 121 22 19 chr12 54128180 54128503 -90153986 + THE1C LTR MaLR 1 324 -51 1875 191 0 0 chr12 54128802 54129105 -90153384 - AluJo SINE Alu -9 303 1 1373 166 14 0 chr12 54129107 54129330 -90153159 - AluJo SINE Alu -5 307 82 1297 138 5 0 chr12 54129932 54130121 -90152368 - AluJo SINE Alu -122 190 1 310 305 155 21 chr12 54130162 54130349 -90152140 + L2 LINE L2 2870 3081 -191 2333 101 3 0 chr12 54130506 54130802 -90151687 - AluSx SINE Alu -15 297 1 1127 141 5 22 chr12 54130803 54130987 -90151502 - AluSg/x SINE Alu -9 301 121 519 228 39 16 chr12 54131281 54131408 -90151081 - MIR SINE MIR -113 149 20 2507 83 3 0 chr12 54131469 54131771 -90150718 + AluSp SINE Alu 1 303 -10 321 233 116 0 chr12 54131804 54131890 -90150599 + L2 LINE L2 3169 3264 -8 2080 137 0 7 chr12 54133282 54133574 -90148915 - AluSx SINE Alu -22 290 1 288 324 102 28 chr12 54135024 54135200 -90147289 + MIR3 SINE MIR 6 194 -14 783 289 56 50 chr12 54135208 54135651 -90146838 + L1ME3A LINE L1 5506 5951 -211 1678 114 0 13 chr12 54135707 54135935 -90146554 + AluSg/x SINE Alu 82 306 -6 1688 170 7 4 chr12 54136097 54136374 -90146115 + AluJo SINE Alu 24 301 -11 343 250 25 67 chr12 54136624 54136744 -90145745 + MIR SINE MIR 147 261 -1 * 884 221 21 7 chr12 54136729 54136932 -90145557 + MIR SINE MIR 58 262 0 592 314 122 58 chr12 54137289 54137924 -90144565 - L2 LINE L2 0 3272 2584 228 247 155 10 chr12 54138110 54138207 -90144282 + L1MC4a LINE L1 6077 6187 -1621 2157 139 0 0 chr12 54139527 54139829 -90142660 + AluSx SINE Alu 1 302 -10 1108 181 0 0 chr12 54139840 54140022 -90142467 + AluJo SINE Alu 121 302 -10 1965 166 3 3 chr12 54140099 54140406 -90142083 - AluJo SINE Alu -5 307 1 266 227 30 0 chr12 54140643 54140709 -90141780 - MER112 DNA MER1_type -192 68 1 219 336 102 53 chr12 54140726 54140952 -90141537 + L2 LINE L2 3016 3252 -20 1129 153 0 12 chr12 54140953 54141123 -90141366 - AluJb SINE Alu -13 299 132 354 263 128 8 chr12 54141284 54141417 -90141072 - MIR3 SINE MIR -53 155 7 2262 104 0 7 chr12 54142220 54142517 -90139972 - AluSx SINE Alu -17 295 1 315 227 106 0 chr12 54142585 54142651 -90139838 + L2 LINE L2 3190 3262 -10 722 261 0 23 chr12 54144444 54144620 -90137869 - MIR SINE MIR -90 172 1 2425 108 0 3 chr12 54145267 54145581 -90136908 - AluSq SINE Alu 0 313 1 208 146 0 24 chr12 54146566 54146607 -90135882 + (GGA)n Simple_repeat Simple_repeat 2 41 0 208 302 146 66 chr12 54147200 54147339 -90135150 - MIR SINE MIR -20 242 79 748 174 32 68 chr12 54147339 54147409 -90135080 + MER5A DNA MER1_type 3 74 -115 2573 58 3 3 chr12 54147409 54147717 -90134772 + AluSg SINE Alu 1 308 -2 748 174 32 68 chr12 54147717 54147836 -90134653 + MER5A DNA MER1_type 74 185 -4 208 302 146 66 chr12 54147836 54147908 -90134581 - MIR SINE MIR -183 79 14 1583 163 102 0 chr12 54148096 54148512 -90133977 - AluJb SINE Alu 0 445 1 1598 177 16 50 chr12 54149654 54149766 -90132723 + AluJo SINE Alu 1 115 -197 1255 120 30 15 chr12 54149766 54149966 -90132523 + L1PA15 LINE L1 5957 6159 -6 1598 177 16 50 chr12 54149966 54150170 -90132319 + AluJo SINE Alu 115 306 -6 269 264 132 11 chr12 54150902 54150993 -90131496 + MIR SINE MIR 108 209 -53 447 250 165 17 chr12 54151128 54151304 -90131185 + MIR SINE MIR 59 260 -2 193 340 73 47 chr12 54151344 54151494 -90130995 - L2 LINE L2 0 3272 3119 1087 174 4 13 chr12 54151499 54151679 -90130810 - MER96B DNA MER1_type? 0 417 238 962 112 0 22 chr12 54151679 54151813 -90130676 + FLAM_C SINE Alu 2 132 -1 1087 174 4 13 chr12 54151813 54151862 -90130627 - MER96B DNA MER1_type? -179 238 190 2628 63 0 0 chr12 54152043 54152345 -90130144 - AluSg SINE Alu -8 302 1 302 130 0 0 chr12 54152499 54152545 -90129944 + MER96B DNA MER1_type? 190 235 -182 389 247 62 39 chr12 54152641 54152819 -90129670 - L1ME4a LINE L1 -2 6119 5938 313 151 58 12 chr12 54152821 54152907 -90129582 + MER104 DNA Tc2 5 94 -86 1264 117 0 22 chr12 54152914 54153093 -90129396 + AluJo SINE Alu 13 187 -125 572 151 11 0 chr12 54153098 54153191 -90129298 - AluJ/FLAM SINE Alu -218 94 1 317 228 124 48 chr12 54153284 54153429 -90129060 - L1 LINE L1 -1633 4513 4358 2342 107 3 0 chr12 54153856 54154166 -90128323 - AluSx SINE Alu -1 311 1 211 242 167 0 chr12 54154729 54154795 -90127694 + MIR SINE MIR 17 93 -115 2221 120 3 3 chr12 54154819 54155118 -90127371 + AluSc SINE Alu 1 299 -10 338 231 0 15 chr12 54155839 54155904 -90126585 - L1MCa LINE L1 -4357 2069 2006 * 393 235 71 0 chr12 54155879 54155964 -90126525 - L1MC4 LINE L1 -1339 6983 6893 258 136 0 0 chr12 54155964 54156008 -90126481 + (TA)n Simple_repeat Simple_repeat 1 44 0 412 123 0 0 chr12 54156008 54156065 -90126424 - AluJb SINE Alu -26 286 230 851 134 7 7 chr12 54156065 54156207 -90126282 - LTR1 LTR ERV1 0 785 644 3005 134 40 94 chr12 54156271 54156948 -90125541 - LTR1 LTR ERV1 -145 640 1 1446 164 0 17 chr12 54156953 54157185 -90125304 - AluJb SINE Alu -84 228 1 2200 133 0 0 chr12 54157557 54157858 -90124631 + AluSq SINE Alu 1 301 -12 239 163 20 20 chr12 54157909 54157958 -90124531 + MLT1L LTR MaLR 144 192 -423 391 280 197 21 chr12 54158087 54158280 -90124209 + MIR SINE MIR 19 245 -17 229 356 14 27 chr12 54158980 54159053 -90123436 - MER91A DNA MER1_type -43 153 82 758 270 77 95 chr12 54159458 54159899 -90122590 + MLT1K LTR MaLR 65 497 -91 222 200 12 25 chr12 54159909 54159989 -90122500 + CT-rich Low_complexity Low_complexity 3 81 0 985 137 0 0 chr12 54160671 54160810 -90121679 - FLAM_C SINE Alu -1 142 4 347 184 13 13 chr12 54160825 54160901 -90121588 - L1ME LINE L1 -461 5660 5585 201 339 0 0 chr12 54161199 54161264 -90121225 + (CAG)n Simple_repeat Simple_repeat 1 65 0 342 291 95 53 chr12 54161478 54161763 -90120726 - L2 LINE L2 -37 3235 2939 1081 206 151 3 chr12 54162079 54162370 -90120119 - MLT1A1 LTR MaLR 0 365 32 1715 173 10 42 chr12 54162380 54162686 -90119803 - AluJo SINE Alu -16 296 1 2084 159 84 25 chr12 54162904 54163343 -90119146 - MLT1C LTR MaLR 0 467 3 2103 124 0 23 chr12 54163347 54163654 -90118835 - AluSx SINE Alu -12 300 1 1065 164 6 0 chr12 54164150 54164309 -90118180 - AluJb SINE Alu -19 293 134 495 308 66 48 chr12 54164313 54164647 -90117842 - L1 LINE L1 -1595 4551 4212 1100 160 0 23 chr12 54164653 54164828 -90117661 - FAM SINE Alu -1 174 4 2506 147 79 29 chr12 54164885 54165403 -90117086 - LTR38 LTR ERV1 -12 544 1 2368 87 0 10 chr12 54165578 54165877 -90116612 - AluSq SINE Alu -17 296 1 1124 186 0 0 chr12 54165980 54166173 -90116316 - AluJo SINE Alu 0 312 120 589 273 87 59 chr12 54166254 54166423 -90116066 - L1 LINE L1 -2846 3300 3118 1914 158 0 7 chr12 54166423 54166708 -90115781 + AluJb SINE Alu 1 283 -29 589 273 87 59 chr12 54166708 54166827 -90115662 - L1 LINE L1 -3028 3118 3004 1700 152 89 0 chr12 54166922 54167191 -90115298 + AluJo SINE Alu 3 295 -17 249 263 126 23 chr12 54167192 54167367 -90115122 - L1 LINE L1 -3319 2827 2635 6952 171 16 53 chr12 54167418 54169585 -90112904 - L1MA4 LINE L1 -12 6288 4041 625 184 0 6 chr12 54169585 54169825 -90112664 + AluJ SINE Alu 1 289 -23 6952 171 16 53 chr12 54169825 54170258 -90112231 - L1MA4 LINE L1 -2259 4041 3675 513 83 0 48 chr12 54170258 54170342 -90112147 - MADE1 DNA Mariner 0 80 1 6952 171 16 53 chr12 54170342 54170634 -90111855 - L1MA4 LINE L1 -2625 3675 3374 349 288 106 35 chr12 54170639 54170837 -90111652 - L1 LINE L1 -3547 2599 2388 786 248 15 0 chr12 54170837 54171039 -90111450 + L1PA16 LINE L1 5952 6156 -10 316 333 6 32 chr12 54171039 54171195 -90111294 - L1 LINE L1 -3737 2409 2258 180 0 0 0 chr12 54171328 54171348 -90111141 + (T)n Simple_repeat Simple_repeat 1 20 0 1963 157 0 0 chr12 54171476 54171780 -90110709 + AluSx SINE Alu 1 304 0 485 217 18 109 chr12 54171799 54171972 -90110517 - L1MC4 LINE L1 -77 7965 7815 1498 170 94 8 chr12 54171972 54172237 -90110252 + AluJo SINE Alu 15 302 -10 485 217 18 109 chr12 54172237 54172284 -90110205 - L1MC4 LINE L1 -227 7815 7765 1433 152 21 109 chr12 54172297 54172627 -90109862 - AluJo SINE Alu -11 301 1 2485 80 0 0 chr12 54172629 54172931 -90109558 - AluSg SINE Alu -8 302 1 1068 110 0 0 chr12 54172931 54173067 -90109422 - AluSq/x SINE Alu -176 136 1 639 309 146 0 chr12 54173181 54173482 -90109007 + L3 LINE CR1 1210 1554 -23 21 0 0 0 chr12 54173862 54173883 -90108606 + AT_rich Low_complexity Low_complexity 1 21 0 206 275 130 0 chr12 54174258 54174327 -90108162 + MIR SINE MIR 53 130 -78 599 260 61 46 chr12 54175908 54176104 -90106385 + MIR SINE MIR 6 204 -58 183 80 0 0 chr12 54176134 54176159 -90106330 + (TG)n Simple_repeat Simple_repeat 2 26 0 181 233 139 0 chr12 54176902 54176945 -90105544 + MIR SINE MIR 2 50 -212 469 318 106 23 chr12 54176953 54177217 -90105272 + L2 LINE L2 3028 3313 0 401 309 149 0 chr12 54177225 54177393 -90105096 + MIR SINE MIR 56 248 -14 1439 177 50 17 chr12 54177475 54177775 -90104714 - AluJb SINE Alu -2 310 1 365 303 63 67 chr12 54178197 54178497 -90103992 - L2 LINE L2 -17 3296 2998 2254 89 0 6 chr12 54178867 54179181 -90103308 + AluSq SINE Alu 1 312 -1 598 263 36 61 chr12 54180795 54181055 -90101434 + MIR SINE MIR 1 250 -12 604 255 95 65 chr12 54181448 54181960 -90100529 - L2 LINE L2 -60 3253 2725 2438 71 0 0 chr12 54182042 54182353 -90100136 - AluY SINE Alu 0 311 1 622 216 49 22 chr12 54182996 54183181 -90099308 - L1MC5 LINE L1 -31 7930 7741 2745 119 14 23 chr12 54183185 54183622 -90098867 - MER65A LTR ERV1 -3 442 10 2083 129 0 0 chr12 54183652 54183962 -90098527 + AluSg SINE Alu 1 310 0 2421 43 0 46 chr12 54184131 54184456 -90098033 - AluY SINE Alu -1 310 1 1760 146 0 40 chr12 54184488 54184790 -90097699 + AluJo SINE Alu 11 300 -12 2302 92 0 0 chr12 54185134 54185437 -90097052 - AluSg SINE Alu -7 303 1 656 250 71 58 chr12 54185437 54185826 -90096663 - L1ME3 LINE L1 -214 5948 5562 861 174 34 87 chr12 54185947 54186212 -90096277 - L1MB3 LINE L1 -316 5867 5617 242 267 139 12 chr12 54186265 54186351 -90096138 + L2 LINE L2 3208 3304 -9 288 411 41 0 chr12 54186398 54186544 -90095945 - L3 LINE CR1 -1199 378 227 1996 99 7 3 chr12 54186929 54187211 -90095278 + AluSx SINE Alu 5 287 -25 2245 81 0 3 chr12 54187222 54187520 -90094969 + AluY SINE Alu 1 297 -14 246 182 23 0 chr12 54187766 54187810 -90094679 + MER57A LTR ERV1 295 339 -64 1829 142 0 32 chr12 54188001 54188317 -90094172 - AluJo SINE Alu -6 306 1 779 152 0 0 chr12 54188346 54188458 -90094031 - FLAM_C SINE Alu -25 118 7 656 244 25 12 chr12 54188743 54188903 -90093586 - MLT1E LTR MaLR -431 162 1 185 167 0 0 chr12 54188905 54188935 -90093554 - MIR SINE MIR -118 144 115 2105 116 3 0 chr12 54188936 54189228 -90093261 + AluSx SINE Alu 2 294 -18 2029 182 48 61 chr12 54189236 54189676 -90092813 - MER21A LTR ERV1 0 931 498 286 219 77 30 chr12 54189710 54189879 -90092610 + (TTGGGG)n Simple_repeat Simple_repeat 2 178 0 267 183 30 61 chr12 54189835 54189966 -90092523 + G-rich Low_complexity Low_complexity 6 132 0 * 290 252 10 39 chr12 54190340 54190443 -90092046 + GA-rich Low_complexity Low_complexity 3 102 0 1563 108 0 0 chr12 54191023 54191271 -90091218 - AluSg/x SINE Alu 0 330 83 1795 142 26 10 chr12 54191570 54191873 -90090616 - AluSx SINE Alu -4 308 1 794 194 239 0 chr12 54192301 54192523 -90089966 - ORSL DNA AcHobo 0 275 1 225 353 109 37 chr12 54192544 54192921 -90089568 + L2 LINE L2 2863 3266 -6 375 259 53 23 chr12 54193481 54193612 -90088877 + MIR3 SINE MIR 47 181 -27 1743 136 0 85 chr12 54193822 54194153 -90088336 - AluSq SINE Alu -10 303 1 1156 178 68 32 chr12 54194154 54194446 -90088043 - MER21A LTR ERV1 -514 349 24 378 0 0 0 chr12 54194447 54194489 -90088000 + (GA)n Simple_repeat Simple_repeat 2 43 0 324 0 0 0 chr12 54194488 54194524 -90087965 + (TG)n Simple_repeat Simple_repeat 2 37 0 * 397 328 96 36 chr12 54194848 54195183 -90087306 + L2 LINE L2 2906 3260 -12 718 216 129 6 chr12 54195712 54195883 -90086606 - MIR SINE MIR -67 195 4 315 0 0 0 chr12 54196284 54196319 -90086170 + (CA)n Simple_repeat Simple_repeat 2 36 0 2361 72 0 10 chr12 54197797 54198103 -90084386 + AluY SINE Alu 1 303 -8 1745 149 14 3 chr12 54198428 54198717 -90083772 + AluSx SINE Alu 1 292 -20 626 121 32 16 chr12 54199068 54199192 -90083297 - AluY SINE Alu -131 180 55 1146 118 5 56 chr12 54199194 54199389 -90083100 - AluSc SINE Alu -124 185 1 1241 193 14 14 chr12 54199538 54199813 -90082676 - AluJo SINE Alu -1 311 37 2196 92 0 3 chr12 54199824 54200117 -90082372 - AluSg SINE Alu -18 292 1 1270 153 18 5 chr12 54200144 54200367 -90082122 + AluSg/x SINE Alu 85 310 0 475 234 47 0 chr12 54200507 54200635 -90081854 - L1MA10 LINE L1 0 6334 6201 1611 119 41 0 chr12 54200636 54200880 -90081609 + AluSp SINE Alu 1 254 -59 224 317 0 0 chr12 54201061 54201121 -90081368 + C-rich Low_complexity Low_complexity 2 61 0 2046 113 10 0 chr12 54201599 54201901 -90080588 - AluSp SINE Alu 0 313 9 1616 186 68 0 chr12 54204262 54204585 -90077904 + MER7A DNA MER2_type 1 343 -3 223 294 16 71 chr12 54205744 54205870 -90076619 - MIR SINE MIR -78 184 66 241 250 17 17 chr12 54207511 54207571 -90074918 + L2 LINE L2 3209 3268 -4 316 322 0 0 chr12 54208358 54208448 -90074041 + G-rich Low_complexity Low_complexity 1 90 0 316 336 20 27 chr12 54208493 54208642 -90073847 + GA-rich Low_complexity Low_complexity 2 149 0 1966 115 97 47 chr12 54208837 54209268 -90073221 + pTR5 LTR ERV1 82 714 0 189 74 0 0 chr12 54210545 54210572 -90071917 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1547 121 0 0 chr12 54211268 54211492 -90070997 - AluSg SINE Alu -86 224 1 1687 128 7 17 chr12 54211550 54211839 -90070650 - L1MB3 LINE L1 -1 6182 5897 1553 91 5 0 chr12 54211840 54212050 -90070439 - AluSg/x SINE Alu -17 293 83 24 32 0 0 chr12 54212113 54212144 -90070345 + GC_rich Low_complexity Low_complexity 1 31 0 454 292 0 0 chr12 54212192 54212363 -90070126 + C-rich Low_complexity Low_complexity 1 171 0 223 225 36 27 chr12 54212438 54212549 -90069940 + (CACAC)n Simple_repeat Simple_repeat 1 112 0 212 156 67 0 chr12 54212764 54212809 -90069680 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1814 138 13 43 chr12 54212900 54213205 -90069284 + AluSx SINE Alu 3 298 -14 29 0 0 0 chr12 54215204 54215233 -90067256 + AT_rich Low_complexity Low_complexity 1 29 0 2041 127 13 0 chr12 54215275 54215574 -90066915 - AluSx SINE Alu -9 303 1 239 227 187 0 chr12 54216006 54216081 -90066408 - MIR SINE MIR -99 163 75 2020 222 24 13 chr12 54216643 54217103 -90065386 - MLT1C LTR MaLR 0 467 3 34 93 0 0 chr12 54217493 54217590 -90064899 + AT_rich Low_complexity Low_complexity 1 97 0 682 213 7 0 chr12 54217601 54217742 -90064747 - L1MD1 LINE L1 -22 6220 6079 188 312 156 25 chr12 54218404 54218641 -90063848 - L2 LINE L2 -562 2752 2485 689 267 47 5 chr12 54218970 54219161 -90063328 - MIR SINE MIR -62 200 2 366 336 23 8 chr12 54219398 54219529 -90062960 + MIR SINE MIR 8 140 -122 460 252 288 26 chr12 54219755 54220057 -90062432 + L2 LINE L2 2931 3311 -2 744 250 31 62 chr12 54220403 54220557 -90061932 - MIR SINE MIR -10 252 108 2298 92 0 6 chr12 54220557 54220871 -90061618 - AluSq SINE Alu 0 313 2 744 250 31 62 chr12 54220871 54220976 -90061513 - MIR SINE MIR -154 108 1 214 333 0 0 chr12 54220977 54221037 -90061452 + L2 LINE L2 3240 3299 -14 210 314 12 23 chr12 54221042 54221128 -90061361 - L2 LINE L2 -650 2664 2580 1741 152 3 20 chr12 54221166 54221468 -90061021 - AluJo SINE Alu -15 297 1 273 162 103 29 chr12 54221933 54222001 -90060488 + L2 LINE L2 3241 3313 0 2101 189 25 59 chr12 54222549 54223072 -90059417 - MLT1D LTR MaLR 0 505 1 234 211 0 58 chr12 54223679 54223731 -90058758 + MIR SINE MIR 162 210 -52 2423 52 0 10 chr12 54223787 54224093 -90058396 + AluY SINE Alu 1 303 -8 2219 119 0 0 chr12 54224103 54224405 -90058084 + AluSc SINE Alu 1 302 -7 317 135 10 106 chr12 54225148 54225184 -90057305 + MLT1E1 LTR MaLR 559 597 -57 2226 101 0 0 chr12 54225184 54225493 -90056996 + AluSc SINE Alu 1 309 0 317 135 10 106 chr12 54225493 54225557 -90056932 + MLT1E1 LTR MaLR 597 652 -2 889 178 97 0 chr12 54225608 54225793 -90056696 + MER3 DNA MER1_type 1 203 -6 2176 123 0 7 chr12 54226500 54226800 -90055689 + AluSx SINE Alu 1 298 -14 2257 85 31 0 chr12 54226938 54227231 -90055258 + AluSx SINE Alu 1 302 -10 425 189 95 0 chr12 54227264 54227359 -90055130 + MIR SINE MIR 66 169 -93 255 213 229 57 chr12 54228591 54228713 -90053776 - MIR3 SINE MIR -28 180 38 265 279 0 0 chr12 54228856 54228935 -90053554 + L2 LINE L2 3190 3268 -4 547 260 123 27 chr12 54229028 54229247 -90053242 + MIR SINE MIR 5 244 -18 1924 82 113 0 chr12 54230230 54230486 -90052003 - AluSc SINE Alu -11 298 14 417 230 122 14 chr12 54231201 54231340 -90051149 + MIR3 SINE MIR 38 191 -17 1681 157 0 39 chr12 54231921 54232207 -90050282 + AluJb SINE Alu 1 275 -37 186 71 0 0 chr12 54232213 54232241 -90050248 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1113 181 34 58 chr12 54232345 54232645 -90049844 + MER33 DNA MER1_type 2 295 -2290 2152 119 3 3 chr12 54232645 54232940 -90049549 - AluSx SINE Alu -17 295 1 1113 181 34 58 chr12 54232940 54232964 -90049525 + MER33 DNA MER1_type 295 318 -6 195 129 0 0 chr12 54233615 54233646 -90048843 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 228 135 0 0 chr12 54233707 54233744 -90048745 + (T)n Simple_repeat Simple_repeat 1 37 0 2871 44 0 0 chr12 54233999 54234342 -90048147 - L1PA5 LINE L1 0 6154 5812 1589 271 64 6 chr12 54235048 54235730 -90046759 - L2 LINE L2 -169 3144 2425 598 221 101 82 chr12 54236166 54236261 -90046228 - L1MC5 LINE L1 -48 7913 7821 1752 178 3 31 chr12 54236261 54236582 -90045907 - AluJo SINE Alu 0 312 1 598 221 101 82 chr12 54236582 54236853 -90045636 - L1MC5 LINE L1 -140 7821 7540 22 56 0 0 chr12 54237229 54237265 -90045224 + AT_rich Low_complexity Low_complexity 1 36 0 296 340 68 0 chr12 54237318 54237421 -90045068 - L2 LINE L2 -3 3269 3160 1402 211 103 44 chr12 54237431 54237867 -90044622 - L1MC5 LINE L1 -537 7424 6963 870 92 0 0 chr12 54237883 54237992 -90044497 + FLAM_C SINE Alu 1 109 -34 186 43 0 0 chr12 54238025 54238048 -90044441 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1395 236 75 88 chr12 54238068 54239049 -90043440 - L1MC5 LINE L1 -894 6914 5980 2284 98 0 0 chr12 54239049 54239326 -90043163 - AluSx SINE Alu -27 285 9 1395 236 75 88 chr12 54239326 54239467 -90043022 - L1MC5 LINE L1 -1828 5980 5839 2499 144 41 5 chr12 54239722 54240133 -90042356 + MSTB LTR MaLR 1 426 0 6494 95 25 14 chr12 54240400 54241351 -90041138 - L1MA5A LINE L1 0 6297 5336 370 266 131 78 chr12 54241351 54241466 -90041023 - L2 LINE L2 -5 3267 3160 2295 108 3 0 chr12 54241466 54241763 -90040726 - AluSx SINE Alu -14 298 1 370 266 131 78 chr12 54241763 54241891 -90040598 - L2 LINE L2 -112 3160 3011 722 198 8 0 chr12 54242678 54242804 -90039685 + FRAM SINE Alu 2 128 -48 416 268 6 54 chr12 54242839 54243007 -90039482 + MIR SINE MIR 47 206 -56 435 224 45 69 chr12 54243246 54243435 -90039054 + MIR SINE MIR 36 218 -44 426 277 39 8 chr12 54244401 54244531 -90037958 - MIR SINE MIR -8 254 121 21 0 0 0 chr12 54245474 54245495 -90036994 + AT_rich Low_complexity Low_complexity 1 21 0 1041 162 12 0 chr12 54245522 54245695 -90036794 - FRAM SINE Alu -3 173 1 181 189 0 0 chr12 54247000 54247037 -90035452 - L2 LINE L2 -2 3270 3234 1679 177 14 0 chr12 54247578 54247875 -90034614 - AluJo SINE Alu 0 301 1 558 292 138 17 chr12 54247923 54248344 -90034145 + L2 LINE L2 2804 3275 -38 393 149 0 0 chr12 54249328 54249395 -90033094 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 1663 171 0 57 chr12 54249396 54249695 -90032794 - AluJo SINE Alu -30 282 1 2422 76 0 10 chr12 54250018 54250322 -90032167 - AluY SINE Alu -10 301 1 194 318 34 62 chr12 54250582 54250758 -90031731 - L2 LINE L2 -808 2506 2336 1671 184 48 3 chr12 54251459 54251752 -90030737 + AluJo SINE Alu 1 306 -6 1571 198 42 0 chr12 54252062 54252350 -90030139 + AluJo SINE Alu 1 300 -12 568 280 58 40 chr12 54252574 54252799 -90029690 - MIR SINE MIR -32 230 2 1147 88 0 132 chr12 54253507 54253712 -90028777 - AluY SINE Alu -133 178 1 24 53 0 0 chr12 54253716 54253754 -90028735 + AT_rich Low_complexity Low_complexity 1 38 0 281 210 34 92 chr12 54256096 54256215 -90026274 + MIR SINE MIR 80 191 -71 184 292 15 15 chr12 54256241 54256306 -90026183 - L2 LINE L2 -5 3267 3203 1835 156 0 0 chr12 54256321 54256590 -90025899 + AluJb SINE Alu 4 272 -40 8379 54 1 0 chr12 54256593 54257558 -90024931 - LTR5 LTR ERVK -3 966 1 230 108 0 0 chr12 54257558 54257595 -90024894 + AluJo SINE Alu 284 320 0 240 288 50 0 chr12 54257595 54257675 -90024814 - L2 LINE L2 -82 3190 3107 644 277 34 29 chr12 54258424 54258680 -90023809 + MIR SINE MIR 6 259 -3 287 279 186 8 chr12 54259670 54259799 -90022690 + L2 LINE L2 2633 2784 -530 316 311 0 94 chr12 54259890 54260070 -90022419 + MIR SINE MIR 34 196 -66 1776 169 10 7 chr12 54260128 54260429 -90022060 + AluSx SINE Alu 1 302 -10 804 173 6 71 chr12 54260780 54260948 -90021541 + FRAM SINE Alu 1 156 -20 290 279 0 0 chr12 54261632 54261700 -90020789 - L2 LINE L2 -2 3311 3244 2411 99 0 0 chr12 54262929 54263231 -90019258 + AluSx SINE Alu 1 302 -10 360 0 0 0 chr12 54263729 54263769 -90018720 + (TG)n Simple_repeat Simple_repeat 2 41 0 450 286 69 111 chr12 54264220 54264580 -90017909 + L2 LINE L2 2896 3240 -32 201 39 0 0 chr12 54265676 54265702 -90016787 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 195 281 0 0 chr12 54266622 54266679 -90015810 + L3b LINE CR1 1328 1384 -199 210 382 96 13 chr12 54267851 54268008 -90014481 - L3b LINE CR1 -59 1524 1355 21 0 0 0 chr12 54268195 54268216 -90014273 + AT_rich Low_complexity Low_complexity 1 21 0 351 65 0 0 chr12 54268407 54268453 -90014036 + (TG)n Simple_repeat Simple_repeat 2 47 0 795 237 103 39 chr12 54269119 54269585 -90012904 - L1MC5 LINE L1 0 8042 7523 271 317 30 48 chr12 54269766 54269933 -90012556 + L2 LINE L2 2624 2787 -527 2331 76 0 3 chr12 54269944 54270233 -90012256 + AluY SINE Alu 1 288 -23 408 273 38 0 chr12 54270490 54270622 -90011867 + L2 LINE L2 3136 3272 0 483 274 73 0 chr12 54271722 54271846 -90010643 - L2 LINE L2 -1 3312 3180 465 279 93 27 chr12 54271898 54272025 -90010464 - L3 LINE CR1 -576 1001 884 3613 124 12 5 chr12 54272025 54272588 -90009901 - L1MC1 LINE L1 0 6333 5767 465 279 93 27 chr12 54272588 54272718 -90009771 - L3 LINE CR1 -693 884 727 237 191 0 0 chr12 54272720 54272762 -90009727 + L3 LINE CR1 673 714 -863 189 74 0 0 chr12 54272853 54272880 -90009609 + (GTCTG)n Simple_repeat Simple_repeat 5 31 0 266 65 0 22 chr12 54273169 54273215 -90009274 + (CAAAAA)n Simple_repeat Simple_repeat 1 45 0 2259 108 3 10 chr12 54275351 54275657 -90006832 + AluSx SINE Alu 2 305 -7 2165 120 16 3 chr12 54276046 54276355 -90006134 - AluSp SINE Alu 0 313 1 24 0 0 0 chr12 54276370 54276394 -90006095 + AT_rich Low_complexity Low_complexity 1 24 0 290 149 0 43 chr12 54276999 54277046 -90005443 + Alu SINE Alu 1 45 -257 663 118 90 69 chr12 54278071 54278215 -90004274 - LTR45B LTR ERV1 0 489 343 1527 262 143 33 chr12 54279889 54280200 -90002289 - L2 LINE L2 -1 3312 3037 2467 68 0 26 chr12 54280200 54280511 -90001978 + AluY SINE Alu 1 303 -8 1527 262 143 33 chr12 54280511 54281507 -90000982 - L2 LINE L2 -276 3037 1866 342 0 0 0 chr12 54281667 54281705 -90000784 + (CA)n Simple_repeat Simple_repeat 2 39 0 353 324 52 23 chr12 54281853 54282026 -90000463 - L2 LINE L2 -1437 1877 1700 2424 43 0 10 chr12 54282596 54282895 -89999594 - L1PA8 LINE L1 0 6172 5877 351 78 0 0 chr12 54283304 54283355 -89999134 + (TG)n Simple_repeat Simple_repeat 1 51 0 201 74 0 0 chr12 54284328 54284355 -89998134 + (T)n Simple_repeat Simple_repeat 1 27 0 308 371 75 0 chr12 54284624 54284783 -89997706 + MIR SINE MIR 1 171 -91 3026 104 101 58 chr12 54285087 54285390 -89997099 - L1MB3 LINE L1 -1 6182 5893 2410 98 0 19 chr12 54285390 54285708 -89996781 - AluSq SINE Alu -1 312 1 3026 104 101 58 chr12 54285708 54285970 -89996519 - L1MB3 LINE L1 -290 5893 5593 365 229 0 0 chr12 54286329 54286399 -89996090 + MIR SINE MIR 76 145 -63 210 277 133 0 chr12 54286707 54286790 -89995699 + MIR SINE MIR 167 260 -2 1556 170 16 79 chr12 54287672 54287989 -89994500 + AluJb SINE Alu 1 297 -15 237 255 92 20 chr12 54288188 54288341 -89994148 + L1ME4a LINE L1 5255 5418 -2390 22 0 0 0 chr12 54288370 54288392 -89994097 + AT_rich Low_complexity Low_complexity 1 22 0 276 254 68 17 chr12 54288392 54288510 -89993979 + L1ME4a LINE L1 5410 5533 -588 2282 106 3 0 chr12 54288525 54288826 -89993663 + AluSx SINE Alu 1 302 -10 267 202 19 96 chr12 54288986 54289090 -89993399 + L1ME4a LINE L1 5967 6062 -59 1091 236 86 22 chr12 54289090 54289250 -89993239 - L2 LINE L2 -23 3290 3142 306 0 0 0 chr12 54289250 54289284 -89993205 + (CA)n Simple_repeat Simple_repeat 2 35 0 1091 236 86 22 chr12 54289284 54289851 -89992638 - L2 LINE L2 -171 3142 2316 2203 63 6 57 chr12 54290311 54290506 -89991983 - AluY SINE Alu -11 300 126 1064 39 0 0 chr12 54290506 54290634 -89991855 - L1PA4 LINE L1 -2 6153 6026 2203 63 6 57 chr12 54290634 54290754 -89991735 - AluY SINE Alu -185 126 1 5475 120 17 0 chr12 54290800 54291611 -89990878 - L1PA16 LINE L1 -18 6148 5324 568 261 0 12 chr12 54291617 54291782 -89990707 + L1 LINE L1 4331 4493 -1653 2131 131 3 3 chr12 54291856 54292161 -89990328 - AluSx SINE Alu -7 305 1 445 53 0 0 chr12 54292161 54292218 -89990271 - AluSc SINE Alu -17 294 238 660 171 16 0 chr12 54292220 54292343 -89990146 + L1P4 LINE L1 5386 5510 -655 917 117 0 0 chr12 54292343 54292463 -89990026 - AluSc SINE Alu -58 251 132 2569 40 0 13 chr12 54292463 54292767 -89989722 - AluY SINE Alu -11 300 1 225 233 50 0 chr12 54292776 54292836 -89989653 - L1 LINE L1 -1665 4481 4419 2289 87 44 0 chr12 54292838 54293136 -89989353 - AluY SINE Alu 0 311 1 920 213 92 7 chr12 54293185 54293457 -89989032 - L1MC5 LINE L1 -368 7593 7299 259 245 0 0 chr12 54293904 54293953 -89988536 - L2 LINE L2 -20 3252 3204 433 314 71 23 chr12 54293978 54294204 -89988285 - MIR SINE MIR -13 249 17 291 291 36 9 chr12 54294892 54295002 -89987487 + MIR SINE MIR 48 160 -102 1873 166 10 0 chr12 54296051 54296359 -89986130 - AluJb SINE Alu -1 311 1 211 252 123 17 chr12 54296600 54296717 -89985772 + MIR SINE MIR 33 166 -62 351 240 39 10 chr12 54297824 54297928 -89984561 + L3b LINE CR1 1281 1387 -196 2403 73 10 7 chr12 54299770 54300071 -89982418 + AluY SINE Alu 1 302 -9 2299 100 3 0 chr12 54301026 54301315 -89981174 - AluSx SINE Alu -22 290 1 237 196 0 0 chr12 54302259 54302315 -89980174 + (TG)n Simple_repeat Simple_repeat 2 57 0 2428 77 0 26 chr12 54303068 54303379 -89979110 - AluSc SINE Alu -6 303 1 289 256 26 0 chr12 54306207 54306285 -89976204 + MIR SINE MIR 168 247 -15 963 264 102 44 chr12 54306291 54306751 -89975738 - MLT1L LTR MaLR -92 419 3 372 291 47 8 chr12 54306868 54306995 -89975494 + MER5B DNA MER1_type 38 169 -9 596 234 40 29 chr12 54307727 54307902 -89974587 + MIR SINE MIR 32 208 -54 315 0 0 0 chr12 54308623 54308658 -89973831 + (TG)n Simple_repeat Simple_repeat 1 35 0 522 216 119 23 chr12 54308659 54308835 -89973654 - MIR SINE MIR -49 213 21 489 313 78 0 chr12 54310104 54310270 -89972219 + L3 LINE CR1 1262 1440 -137 547 260 123 27 chr12 54311223 54311442 -89971047 - MIR SINE MIR -18 244 5 265 279 0 0 chr12 54311535 54311614 -89970875 - L2 LINE L2 -4 3268 3190 255 213 229 57 chr12 54311757 54311879 -89970610 + MIR3 SINE MIR 38 180 -28 425 189 95 0 chr12 54313111 54313206 -89969283 - MIR SINE MIR -93 169 66 2214 89 31 0 chr12 54313239 54313532 -89968957 - AluSx SINE Alu -10 302 1 504 272 18 24 chr12 54313532 54313701 -89968788 + MIR SINE MIR 93 260 -2 626 200 222 11 chr12 54313719 54313899 -89968590 + MIR SINE MIR 25 242 -20 2216 122 3 3 chr12 54313904 54314216 -89968273 + AluSp SINE Alu 1 312 -1 2242 107 0 0 chr12 54314324 54314615 -89967874 - AluSx SINE Alu -21 291 1 652 270 166 22 chr12 54315043 54315447 -89967042 - L3 LINE CR1 0 1577 1116 924 235 121 39 chr12 54315609 54316072 -89966417 + MLT1H LTR MaLR 1 547 -2 2081 98 44 10 chr12 54316315 54316612 -89965877 - AluSx SINE Alu -5 307 1 201 158 0 0 chr12 54316827 54316865 -89965624 + T-rich Low_complexity Low_complexity 1 38 0 1256 196 45 0 chr12 54317049 54317294 -89965195 - Charlie4 DNA MER1_type -1705 256 1 301 162 120 77 chr12 54317616 54317733 -89964756 - L1MC4 LINE L1 -7 8035 7914 3255 35 20 0 chr12 54317734 54318128 -89964361 + MER11C LTR ERVK 1 402 -669 12337 14 0 0 chr12 54318481 54320649 -89961840 + L1HS LINE L1 3985 6153 -2 19270 28 2 0 chr12 54320665 54323701 -89958788 + L1PA3 LINE L1 3122 6161 0 1501 249 69 81 chr12 54323701 54324526 -89957963 + L1ME3A LINE L1 5354 6168 -2 2065 94 73 0 chr12 54324726 54325012 -89957477 + AluSg SINE Alu 1 307 -3 406 301 27 20 chr12 54325153 54325299 -89957190 - MLT1J2 LTR MaLR -1 449 303 2214 128 0 0 chr12 54325386 54325690 -89956799 - AluSc SINE Alu -5 304 1 638 283 0 6 chr12 54325710 54325887 -89956602 - L1MC4a LINE L1 -1871 5937 5762 292 212 0 30 chr12 54325900 54325966 -89956523 + L2 LINE L2 3246 3309 -4 2064 119 14 3 chr12 54326062 54326355 -89956134 - AluSq SINE Alu -17 296 1 573 259 176 9 chr12 54326406 54326622 -89955867 + MIR SINE MIR 11 262 0 343 327 91 5 chr12 54326988 54327187 -89955302 - MIR SINE MIR -16 246 31 396 197 0 0 chr12 54327187 54327258 -89955231 - MER63C DNA MER1_type 0 930 860 2071 149 0 7 chr12 54327260 54327562 -89954927 - AluSx SINE Alu -12 300 1 889 178 97 0 chr12 54328268 54328453 -89954036 - MER3 DNA MER1_type -6 203 1 1233 214 36 33 chr12 54328504 54328568 -89953921 - MLT1E1 LTR MaLR -2 652 590 180 0 0 0 chr12 54328568 54328588 -89953901 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2225 101 0 0 chr12 54328590 54328877 -89953612 - AluSc SINE Alu -22 287 1 1233 214 36 33 chr12 54328877 54329141 -89953348 - MLT1E1 LTR MaLR -64 590 320 2125 129 0 0 chr12 54329233 54329535 -89952954 + AluSx SINE Alu 1 302 -10 744 221 19 0 chr12 54329575 54329733 -89952756 - MLT1E1 LTR MaLR -390 264 104 483 250 69 0 chr12 54329708 54329852 -89952637 - MLT1E LTR MaLR -436 157 4 * 728 252 157 41 chr12 54329876 54330008 -89952481 - L1ME4a LINE L1 -69 6052 5937 724 148 74 20 chr12 54330008 54330157 -89952332 - L1MA9 LINE L1 0 6312 6156 728 252 157 41 chr12 54330157 54330508 -89951981 - L1ME4a LINE L1 -184 5937 5513 2097 131 0 13 chr12 54330891 54331213 -89951276 + AluJo SINE Alu 1 312 0 330 232 109 58 chr12 54331481 54331619 -89950870 + MIR3 SINE MIR 54 198 -10 231 335 18 24 chr12 54331976 54332146 -89950343 - L2 LINE L2 -2930 384 216 199 327 0 0 chr12 54332265 54332317 -89950172 + MIR SINE MIR 189 240 -22 264 336 62 0 chr12 54332621 54332734 -89949755 + L2 LINE L2 3149 3268 -4 2477 171 49 86 chr12 54332885 54333501 -89948988 + MER77 LTR ERV1 1 593 -12 448 270 188 20 chr12 54333602 54333895 -89948594 - L2 LINE L2 0 3313 2972 268 330 56 22 chr12 54333935 54334114 -89948375 - MER5A DNA MER1_type -3 186 2 784 280 35 19 chr12 54334709 54334970 -89947519 + LTR16A1 LTR ERVL 161 425 -32 295 339 0 8 chr12 54335378 54335496 -89946993 + L2 LINE L2 2990 3106 -166 22 56 0 0 chr12 54336176 54336212 -89946277 + AT_rich Low_complexity Low_complexity 1 36 0 1539 115 126 19 chr12 54336378 54336648 -89945841 + AluJb SINE Alu 1 299 -13 216 158 0 0 chr12 54337448 54337486 -89945003 + CT-rich Low_complexity Low_complexity 2 39 0 22 0 0 0 chr12 54337613 54337635 -89944854 + GC_rich Low_complexity Low_complexity 1 22 0 491 258 69 58 chr12 54337791 54338082 -89944407 - L2 LINE L2 -17 3296 3003 319 265 61 30 chr12 54338204 54338336 -89944153 - MER112 DNA MER1_type -70 190 55 204 135 0 0 chr12 54338418 54338455 -89944034 + (TA)n Simple_repeat Simple_repeat 1 37 0 2653 201 57 40 chr12 54338457 54338639 -89943850 - L1MD3 LINE L1 -6 7989 7812 2228 100 10 0 chr12 54338639 54338929 -89943560 - AluSx SINE Alu -19 293 1 2653 201 57 40 chr12 54338929 54339351 -89943138 - L1MD3 LINE L1 -183 7812 7399 274 111 0 93 chr12 54339351 54339405 -89943084 - MLT1F1 LTR MaLR -471 96 48 2653 201 57 40 chr12 54339405 54339696 -89942793 - L1MD3 LINE L1 -596 7399 6800 408 98 68 0 chr12 54339707 54339840 -89942649 + (TA)n Simple_repeat Simple_repeat 2 143 0 283 183 37 0 chr12 54339841 54339923 -89942566 + (TATAA)n Simple_repeat Simple_repeat 1 85 0 398 272 183 21 chr12 54340023 54340214 -89942275 + MLT1J LTR MaLR 4 225 -286 2388 82 0 3 chr12 54340215 54340519 -89941970 + AluSg SINE Alu 1 303 -7 359 223 32 0 chr12 54341268 54341362 -89941127 - MIR SINE MIR -147 115 19 1234 244 119 53 chr12 54341835 54342348 -89940141 - MLT1H1 LTR MaLR -6 549 3 2229 103 0 22 chr12 54342380 54342692 -89939797 - AluSq SINE Alu -8 305 1 292 219 49 0 chr12 54342823 54342905 -89939584 - MER63C DNA MER1_type -374 556 471 1717 181 28 17 chr12 54342940 54343300 -89939189 - MER63C DNA MER1_type -429 501 138 16131 123 11 10 chr12 54343308 54345700 -89936789 + Tigger1 DNA MER2_type 24 2418 0 378 147 0 0 chr12 54345702 54345770 -89936719 - MER63C DNA MER1_type -794 136 69 2539 225 124 8 chr12 54346143 54346787 -89935702 + HsTC2c DNA Tc2 7 725 -4 2233 107 0 0 chr12 54347000 54347291 -89935198 - AluSx SINE Alu -19 293 3 1425 226 59 87 chr12 54347308 54347800 -89934689 - L1ME3A LINE L1 -3 6167 5690 214 270 36 72 chr12 54347802 54347913 -89934576 + L2 LINE L2 3078 3184 -88 976 183 15 10 chr12 54347934 54348131 -89934358 + L1MC5 LINE L1 6990 7187 -774 3789 124 9 0 chr12 54348132 54348656 -89933833 - MER1A DNA MER1_type 0 529 1 960 208 127 81 chr12 54348758 54349053 -89933436 + L1MC5 LINE L1 7340 7620 -341 2336 91 10 0 chr12 54349053 54349350 -89933139 - AluSp SINE Alu -12 301 2 960 208 127 81 chr12 54349350 54349607 -89932882 + L1MC5 LINE L1 7620 7917 -44 199 290 0 0 chr12 54349639 54349701 -89932788 + L2 LINE L2 3252 3313 0 2304 230 102 5 chr12 54350028 54350624 -89931865 + L1MC4a LINE L1 5382 6035 -1773 467 208 280 0 chr12 54350683 54350808 -89931681 + MER63A DNA MER1_type 50 209 -1 2049 126 0 17 chr12 54350892 54351193 -89931296 - AluSx SINE Alu -16 296 1 6724 49 142 8 chr12 54352057 54352963 -89929526 - L1P LINE L1 -5116 1030 3 2479 84 10 0 chr12 54353005 54353354 -89929135 - AluSq SINE Alu 0 352 1 1207 271 108 4 chr12 54353356 54353866 -89928623 - L1ME3A LINE L1 -816 5330 4768 1339 267 133 6 chr12 54353889 54354657 -89927832 - L2 LINE L2 -2 3311 2445 284 276 58 75 chr12 54354790 54354944 -89927545 - L2 LINE L2 -205 3067 2915 2780 214 34 3 chr12 54354944 54355510 -89926979 - MER119 DNA MER1_type 0 583 1 284 276 58 75 chr12 54355510 54355529 -89926960 - L2 LINE L2 -357 2915 2897 2241 91 0 24 chr12 54355539 54355837 -89926652 - AluSg SINE Alu -15 295 5 983 100 0 8 chr12 54355844 54355974 -89926515 - AluSq/x SINE Alu -180 133 5 251 260 90 30 chr12 54356687 54356787 -89925702 - MLT1H LTR MaLR -12 537 432 1602 154 0 4 chr12 54357008 54357248 -89925241 + AluSx SINE Alu 59 297 -15 2183 123 0 3 chr12 54357313 54357613 -89924876 + AluSx SINE Alu 1 299 -13 629 281 13 50 chr12 54357758 54357894 -89924595 - MIR SINE MIR -6 256 131 2002 140 0 31 chr12 54357894 54358215 -89924274 + AluJb SINE Alu 1 311 -1 629 281 13 50 chr12 54358215 54358316 -89924173 - MIR SINE MIR -131 131 28 249 83 0 0 chr12 54359058 54359094 -89923395 + (TG)n Simple_repeat Simple_repeat 1 36 0 444 236 18 0 chr12 54359296 54359406 -89923083 - L3 LINE CR1 -190 1387 1276 2478 70 7 0 chr12 54360030 54360331 -89922158 - AluSp SINE Alu -10 303 1 185 217 0 83 chr12 54360371 54360431 -89922058 + L2 LINE L2 3208 3262 -10 193 292 0 0 chr12 54360454 54360502 -89921987 - L2 LINE L2 -1 3312 3265 2960 123 170 11 chr12 54360524 54361071 -89921418 - MER51A LTR ERV1 0 634 1 805 209 58 29 chr12 54361127 54361404 -89921085 + L1MEc LINE L1 2072 2356 -4040 1003 85 110 6 chr12 54361424 54361588 -89920901 - L1MA8 LINE L1 -1 6290 6110 1284 247 7 0 chr12 54361626 54361926 -89920563 - AluSx SINE Alu 0 302 1 270 95 0 0 chr12 54361949 54361991 -89920498 + (T)n Simple_repeat Simple_repeat 1 42 0 217 277 31 0 chr12 54362022 54362152 -89920337 + CT-rich Low_complexity Low_complexity 1 134 0 201 74 0 0 chr12 54362208 54362235 -89920254 + (C)n Simple_repeat Simple_repeat 1 27 0 20629 44 53 3 chr12 54362382 54364971 -89917518 - L1P LINE L1 -3428 2718 1 * 20910 38 3 3 chr12 54364962 54367501 -89914988 - L1P LINE L1 -2999 3147 611 335 189 32 11 chr12 54367625 54367720 -89914769 - L1ME LINE L1 -721 5443 5347 * 2619 235 99 21 chr12 54367717 54368516 -89913973 + L1MC4 LINE L1 6811 7671 -371 3505 105 21 8 chr12 54368536 54369020 -89913469 + MER1A DNA MER1_type 40 529 0 793 246 42 21 chr12 54369038 54369278 -89913211 + L1MC4 LINE L1 7689 7933 -109 213 170 21 21 chr12 54369278 54369325 -89913164 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 4738 60 23 0 chr12 54369332 54369946 -89912543 - MER11C LTR ERVK 0 1071 444 6689 109 6 18 chr12 54370046 54371040 -89911449 + Tigger1 DNA MER2_type 672 1653 -765 4594 60 3 3 chr12 54371041 54371612 -89910877 + L1PA6 LINE L1 5542 6112 -42 717 249 75 9 chr12 54371724 54371937 -89910552 + MIR SINE MIR 28 254 -8 221 336 21 40 chr12 54372540 54372695 -89909794 - MIR SINE MIR -59 149 16 2714 162 31 35 chr12 54372976 54373359 -89909130 + Tigger1 DNA MER2_type 33 415 -2003 2131 140 0 6 chr12 54373359 54373673 -89908816 + AluSx SINE Alu 1 312 0 2714 162 31 35 chr12 54373673 54373800 -89908689 + Tigger1 DNA MER2_type 415 541 -1877 257 219 85 0 chr12 54373802 54373884 -89908605 - FRAM SINE Alu -37 129 41 4034 133 24 11 chr12 54374202 54374955 -89907534 - L1MA8 LINE L1 -346 5945 5183 * 5732 204 63 70 chr12 54374941 54375397 -89907092 + L1ME1 LINE L1 2222 2680 -3466 2014 156 0 10 chr12 54375397 54375704 -89906785 + AluSx SINE Alu 1 304 -8 5732 204 63 70 chr12 54375704 54376119 -89906370 + L1ME1 LINE L1 2680 3097 -3049 1948 98 4 4 chr12 54376119 54376374 -89906115 + AluSq SINE Alu 38 292 -21 5732 204 63 70 chr12 54376374 54376812 -89905677 + L1ME1 LINE L1 3097 3537 -2609 1861 166 0 3 chr12 54376812 54377108 -89905381 + AluJo SINE Alu 1 295 -17 2050 96 33 17 chr12 54377110 54377412 -89905077 + AluSq SINE Alu 1 307 -6 5732 204 63 70 chr12 54377412 54379055 -89903434 + L1ME1 LINE L1 3538 5162 -984 1019 174 0 0 chr12 54379062 54379223 -89903266 - FAM SINE Alu -13 172 12 3151 188 35 71 chr12 54379236 54379386 -89903103 + L1ME1 LINE L1 5158 5312 -854 539 252 8 0 chr12 54379386 54379505 -89902984 - FLAM_A SINE Alu -13 120 1 3151 188 35 71 chr12 54379505 54380359 -89902130 + L1ME1 LINE L1 5312 6122 -44 454 166 194 29 chr12 54380256 54380395 -89902094 + L1MA10 LINE L1 6169 6330 -4 * 300 349 8 0 chr12 54380424 54380556 -89901933 - MIR SINE MIR -24 238 106 340 306 154 75 chr12 54380952 54381433 -89901056 - L1M2 LINE L1 -5475 1374 856 207 254 0 17 chr12 54382566 54382625 -89899864 + G-rich Low_complexity Low_complexity 3 60 0 214 147 0 0 chr12 54382778 54382812 -89899677 + (CCG)n Simple_repeat Simple_repeat 1 34 0 195 114 0 0 chr12 54383484 54383519 -89898970 + (CCCCCT)n Simple_repeat Simple_repeat 3 37 0 434 283 138 14 chr12 54385546 54385691 -89896798 - L3 LINE CR1 -11 1566 1404 953 220 21 12 chr12 54386155 54386396 -89896093 + AluJo SINE Alu 22 264 -48 347 240 0 10 chr12 54386424 54386524 -89895965 - Tigger1 DNA MER2_type -1901 517 419 26 50 0 0 chr12 54386871 54386911 -89895578 + GC_rich Low_complexity Low_complexity 1 40 0 189 311 66 0 chr12 54391621 54391682 -89890807 - L3 LINE CR1 -1138 439 375 22 35 0 0 chr12 54392277 54392306 -89890183 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr12 54392500 54392525 -89889964 + (T)n Simple_repeat Simple_repeat 1 25 0 884 90 69 0 chr12 54392818 54392963 -89889526 + L1MA5A LINE L1 6142 6296 -1 1315 191 33 4 chr12 54392993 54393266 -89889223 + L1MB3 LINE L1 5891 6171 -12 216 0 0 0 chr12 54393266 54393290 -89889199 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 3058 207 40 65 chr12 54393673 54395104 -89887385 - L1ME1 LINE L1 -20 6540 5157 245 51 26 0 chr12 54395117 54395156 -89887333 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2107 102 16 22 chr12 54395162 54395477 -89887012 - AluSp SINE Alu 0 313 1 1386 149 0 0 chr12 54395483 54395711 -89886778 - L1PA15 LINE L1 -2 6163 5936 12306 176 14 22 chr12 54395761 54397470 -89885019 - L1PB1 LINE L1 0 6867 5147 279 0 0 0 chr12 54397470 54397501 -89884988 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 12306 176 14 22 chr12 54397501 54397537 -89884952 - L1PB1 LINE L1 -1720 5147 5112 2253 105 3 3 chr12 54397537 54397842 -89884647 - AluSx SINE Alu -7 305 1 12306 176 14 22 chr12 54397842 54398654 -89883835 - L1PB1 LINE L1 -1755 5112 4295 2357 57 40 7 chr12 54398654 54398955 -89883534 - AluY SINE Alu 0 311 1 12306 176 14 22 chr12 54398955 54400252 -89882237 - L1PB1 LINE L1 -2572 4295 3041 1050 90 0 0 chr12 54400253 54400387 -89882102 + AluSx SINE Alu 1 134 -178 1640 14 0 33 chr12 54400387 54400599 -89881890 + L1PA4 LINE L1 5919 6123 -32 241 80 20 20 chr12 54400607 54400657 -89881832 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 1423 84 0 16 chr12 54400657 54400838 -89881651 + AluSx SINE Alu 126 305 -7 3204 114 85 7 chr12 54400849 54401486 -89881003 - L1PB1 LINE L1 -3818 3044 2357 6660 222 62 41 chr12 54401486 54401835 -89880654 - L1ME1 LINE L1 -1373 5167 4827 1977 48 107 11 chr12 54401835 54402106 -89880383 - AluY SINE Alu -14 297 1 6660 222 62 41 chr12 54402106 54402135 -89880354 - L1ME1 LINE L1 -1713 4827 4800 207 0 0 0 chr12 54402135 54402158 -89880331 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2095 104 14 4 chr12 54402160 54402439 -89880050 - AluSq SINE Alu -31 282 1 6660 222 62 41 chr12 54402439 54402800 -89879689 - L1ME1 LINE L1 -1740 4800 4448 1789 164 3 23 chr12 54402800 54403105 -89879384 - AluJb SINE Alu -9 303 5 6660 222 62 41 chr12 54403105 54403377 -89879112 - L1ME1 LINE L1 -2092 4448 4183 2182 113 3 3 chr12 54403377 54403668 -89878821 - AluSq SINE Alu -22 291 1 6660 222 62 41 chr12 54403668 54405099 -89877390 - L1ME1 LINE L1 -2357 4183 2667 1438 145 0 12 chr12 54405107 54405362 -89877127 - L1MD3 LINE L1 -13 7982 7731 2741 202 94 90 chr12 54405390 54405496 -89876993 - L1ME1 LINE L1 -3892 2648 2544 1028 111 6 0 chr12 54405496 54405658 -89876831 - L1MB1 LINE L1 -4 6164 6002 2741 202 94 90 chr12 54405658 54405921 -89876568 - L1ME1 LINE L1 -3996 2544 2283 1801 189 7 0 chr12 54405921 54406223 -89876266 + AluJb SINE Alu 3 306 -6 2741 202 94 90 chr12 54406223 54406373 -89876116 - L1ME1 LINE L1 -4257 2283 2135 1591 184 3 49 chr12 54406373 54406678 -89875811 - AluJo SINE Alu -21 291 1 2741 202 94 90 chr12 54406678 54406999 -89875490 - L1ME1 LINE L1 -4405 2135 1817 1634 117 113 15 chr12 54406999 54407273 -89875216 + AluSq SINE Alu 1 301 -12 2741 202 94 90 chr12 54407273 54407284 -89875205 - L1ME1 LINE L1 -4723 1817 1808 1950 149 7 3 chr12 54407284 54407580 -89874909 + AluJo SINE Alu 1 297 -15 2741 202 94 90 chr12 54407580 54408492 -89873997 - L1ME1 LINE L1 -4732 1808 916 501 331 41 56 chr12 54408966 54409105 -89873384 - L1ME1 LINE L1 -6191 349 209 459 0 0 0 chr12 54409105 54409156 -89873333 + (CA)n Simple_repeat Simple_repeat 2 52 0 501 331 41 56 chr12 54409156 54409354 -89873135 - L1ME1 LINE L1 -6331 209 17 34 42 0 0 chr12 54409528 54409576 -89872913 + AT_rich Low_complexity Low_complexity 1 48 0 656 247 35 103 chr12 54409765 54410142 -89872347 - L1MC4a LINE L1 -1884 5924 5574 322 288 54 9 chr12 54411216 54411327 -89871162 + MARNA DNA Mariner 94 209 -377 1937 131 14 11 chr12 54411358 54411640 -89870849 + AluJo SINE Alu 7 289 -23 6542 205 86 68 chr12 54412790 54413373 -89869116 - L1MC3 LINE L1 0 7785 7213 252 299 0 62 chr12 54413373 54413470 -89869019 - MLT1F1 LTR MaLR -442 125 35 6542 205 86 68 chr12 54413470 54414259 -89868230 - L1MC3 LINE L1 -572 7213 6439 7714 20 2 0 chr12 54414259 54415534 -89866955 - L1PA4 LINE L1 -1 6154 4876 6542 205 86 68 chr12 54415534 54416238 -89866251 - L1MC3 LINE L1 -1346 6439 5575 1525 214 33 0 chr12 54416609 54416941 -89865548 - MER74B LTR ERVL -67 555 213 242 226 0 0 chr12 54416976 54417029 -89865460 - MER74B LTR ERVL -569 53 1 316 244 22 33 chr12 54417191 54417281 -89865208 - L2 LINE L2 0 3272 3184 296 140 21 65 chr12 54417429 54417522 -89864967 + (TTTA)n Simple_repeat Simple_repeat 1 89 0 331 280 72 56 chr12 54417766 54417962 -89864527 + MIR SINE MIR 21 222 -40 2032 124 0 3 chr12 54418041 54418324 -89864165 - AluSc SINE Alu -27 282 1 525 282 91 55 chr12 54419642 54419923 -89862566 + L3 LINE CR1 1233 1529 -48 1082 158 27 40 chr12 54419923 54420145 -89862344 - MER20 DNA MER1_type 0 219 1 525 282 91 55 chr12 54420145 54420193 -89862296 + L3 LINE CR1 1529 1574 -3 207 0 0 0 chr12 54420226 54420249 -89862240 + (A)n Simple_repeat Simple_repeat 1 23 0 224 314 45 15 chr12 54420611 54420735 -89861754 + MIR SINE MIR 10 135 -73 2805 134 17 4 chr12 54420740 54421211 -89861278 - L1MB3 LINE L1 -7 6176 5700 546 261 0 8 chr12 54423574 54423704 -89858785 + MIR SINE MIR 84 212 -50 430 265 105 40 chr12 54424567 54424891 -89857598 + L1ME4a LINE L1 5610 5954 -216 225 221 116 12 chr12 54425186 54425272 -89857217 + L1ME4a LINE L1 5997 6091 -30 2181 107 7 3 chr12 54425277 54425592 -89856897 - AluSx SINE Alu 0 317 2 532 274 43 102 chr12 54425852 54426107 -89856382 + L2 LINE L2 3014 3253 -19 231 36 0 0 chr12 54426113 54426141 -89856348 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2238 101 0 7 chr12 54426632 54426939 -89855550 - AluY SINE Alu -6 305 1 12921 110 25 25 chr12 54427514 54429130 -89853359 + Tigger1 DNA MER2_type 1 1616 -802 2462 78 0 0 chr12 54429130 54429426 -89853063 - AluSc SINE Alu -13 296 1 12921 110 25 25 chr12 54429426 54429624 -89852865 + Tigger1 DNA MER2_type 1616 1818 -600 1879 119 14 4 chr12 54429624 54429902 -89852587 - AluJb SINE Alu -14 298 18 12921 110 25 25 chr12 54429902 54430045 -89852444 + Tigger1 DNA MER2_type 1817 1959 -459 1047 148 0 12 chr12 54430045 54430214 -89852275 - FRAM SINE Alu -3 173 7 1961 133 0 32 chr12 54430214 54430529 -89851960 + Tigger1 DNA MER2_type 1951 2255 -163 1515 158 25 59 chr12 54430529 54430852 -89851637 - AluJb SINE Alu 0 312 1 342 0 0 0 chr12 54430854 54430892 -89851597 + (T)n Simple_repeat Simple_repeat 1 38 0 415 298 8 46 chr12 54431884 54432122 -89850367 + Tigger1 DNA MER2_type 2012 2240 -178 616 297 19 55 chr12 54432148 54432458 -89850031 - AluJb SINE Alu -3 299 1 288 0 0 0 chr12 54432461 54432493 -89849996 + (T)n Simple_repeat Simple_repeat 1 32 0 972 173 12 0 chr12 54432493 54432661 -89849828 + Tigger1 DNA MER2_type 2249 2418 0 1594 153 104 52 chr12 54433278 54433605 -89848884 - MER2 DNA MER2_type 0 344 1 442 246 21 4 chr12 54433675 54433785 -89848704 + MIR SINE MIR 13 121 -87 212 263 79 0 chr12 54434874 54434950 -89847539 - MIR SINE MIR -41 221 140 302 265 72 0 chr12 54435571 54435654 -89846835 + MIR SINE MIR 124 212 -50 223 289 0 0 chr12 54436139 54436191 -89846298 + L2 LINE L2 3262 3313 0 921 228 94 5 chr12 54436497 54436721 -89845768 + MIR SINE MIR 3 246 -16 6574 68 11 51 chr12 54436759 54438214 -89844275 + SVA Other Other 306 1381 -5 268 74 0 37 chr12 54438218 54438272 -89844217 + (TAAAA)n Simple_repeat Simple_repeat 4 55 0 384 326 76 0 chr12 54438362 54438506 -89843983 - L2 LINE L2 -559 2755 2601 796 203 42 0 chr12 54438516 54438659 -89843830 - MER58B DNA MER1_type -14 327 179 851 139 46 7 chr12 54438663 54438814 -89843675 + L1MB3 LINE L1 6025 6181 -2 816 151 0 16 chr12 54439320 54439446 -89843043 + FLAM_A SINE Alu 10 133 -9 881 209 13 13 chr12 54440454 54440612 -89841877 - FAM SINE Alu -16 159 2 2633 102 11 3 chr12 54440698 54441050 -89841439 - THE1A LTR MaLR 0 355 1 12449 93 5 2 chr12 54441050 54442625 -89839864 - THE1A-int LTR MaLR 0 1580 1 1088 54 0 0 chr12 54442625 54442754 -89839735 - THE1A LTR MaLR 0 355 227 507 123 0 0 chr12 54442755 54442828 -89839661 - AluSg SINE Alu -9 301 229 1283 57 0 0 chr12 54442828 54442986 -89839503 + MER9 LTR ERVK 3 160 -351 4112 90 0 4 chr12 54443002 54443515 -89838974 - MER9 LTR ERVK 0 511 1 1709 119 0 4 chr12 54443515 54443751 -89838738 - AluSg SINE Alu -75 235 1 1440 119 26 4 chr12 54443751 54443978 -89838511 - THE1A LTR MaLR -123 232 1 880 341 97 35 chr12 54444284 54445174 -89837315 + L2 LINE L2 2255 3206 -66 4093 147 71 35 chr12 54445228 54445286 -89837203 - L1MB4 LINE L1 -6 6174 6120 1929 84 0 0 chr12 54445286 54445523 -89836966 + AluSq SINE Alu 1 237 -76 4093 147 71 35 chr12 54445523 54446896 -89835593 - L1MB4 LINE L1 -60 6120 4696 803 183 0 8 chr12 54446933 54447059 -89835430 - FLAM_C SINE Alu -17 126 2 1760 161 3 37 chr12 54447160 54447458 -89835031 - AluSx SINE Alu -24 288 1 1496 180 30 30 chr12 54447620 54447920 -89834569 - AluJo SINE Alu -10 302 3 309 321 148 19 chr12 54448148 54448310 -89834179 + MIR3 SINE MIR 7 189 -19 1328 248 62 15 chr12 54448470 54448976 -89833513 + L1P5 LINE L1 4902 5441 -713 * 1932 135 84 70 chr12 54448975 54449389 -89833100 + L1MB5 LINE L1 5371 5790 -384 1054 75 106 12 chr12 54449428 54449588 -89832901 - L1MA5 LINE L1 -2 6298 6124 6286 141 24 1 chr12 54449614 54450720 -89831769 - L1M LINE L1 -746 5400 4293 1607 184 98 6 chr12 54450727 54451054 -89831435 + L1MB5 LINE L1 5810 6166 -8 2085 210 103 17 chr12 54451074 54451719 -89830770 + L1ME3 LINE L1 5437 6162 0 684 254 46 0 chr12 54452880 54453053 -89829436 + MIR SINE MIR 77 257 -5 297 257 105 9 chr12 54453386 54453491 -89828998 + MIR3 SINE MIR 78 192 -16 1184 80 0 0 chr12 54456152 54456303 -89826186 - AluSg/x SINE Alu -6 306 156 2267 115 0 0 chr12 54456461 54456756 -89825733 - AluSx SINE Alu -17 295 1 246 200 22 0 chr12 54456849 54456894 -89825595 + MIR SINE MIR 76 121 -87 2858 78 3 11 chr12 54456958 54457318 -89825171 - L1PA11 LINE L1 0 6174 5818 1982 181 130 30 chr12 54457884 54458030 -89824459 - MER34 LTR ERV1 0 542 412 2347 109 0 0 chr12 54458030 54458332 -89824157 + AluSg SINE Alu 1 302 -8 1982 181 130 30 chr12 54458332 54458654 -89823835 - MER34 LTR ERV1 -130 412 27 311 284 0 39 chr12 54458835 54458962 -89823527 - L3b LINE CR1 -360 1223 1102 818 157 81 60 chr12 54459594 54459779 -89822710 - AluJo SINE Alu -1 311 123 2483 77 3 0 chr12 54460150 54460449 -89822040 + AluSp SINE Alu 1 300 -13 501 276 112 7 chr12 54460527 54460679 -89821810 - MIR3 SINE MIR -6 202 35 180 167 0 111 chr12 54460972 54461026 -89821463 + MIR SINE MIR 67 114 -148 1753 130 16 0 chr12 54461102 54461356 -89821133 - Tigger3(Golem) DNA MER2_type -1 3028 2771 629 214 50 43 chr12 54461353 54461493 -89820996 - Tigger3(Golem) DNA MER2_type -2887 142 2 * 247 325 146 8 chr12 54461495 54461618 -89820871 + MIR3 SINE MIR 16 155 -53 299 338 45 17 chr12 54462508 54462640 -89819849 + MIR SINE MIR 28 161 -62 341 292 78 36 chr12 54463075 54463267 -89819222 - L2 LINE L2 0 3313 3114 572 330 180 14 chr12 54464224 54465050 -89817439 + L2 LINE L2 1527 2489 -825 261 331 7 31 chr12 54465095 54465239 -89817250 - MIR SINE MIR -67 141 3 1816 146 92 3 chr12 54465338 54465653 -89816836 - MER2 DNA MER2_type -1 343 1 397 301 30 133 chr12 54465881 54466379 -89816110 - L2 LINE L2 0 3272 2826 2269 100 0 7 chr12 54466584 54466883 -89815606 - AluSx SINE Alu -15 297 1 771 282 31 27 chr12 54466969 54467228 -89815261 - MIR SINE MIR -1 261 2 204 283 0 33 chr12 54467736 54467796 -89814693 + L3 LINE CR1 1481 1538 -39 200 320 75 95 chr12 54467801 54467948 -89814541 + MIR3 SINE MIR 16 159 -49 864 217 98 33 chr12 54467977 54468221 -89814268 + MIR SINE MIR 3 262 0 1344 191 0 0 chr12 54469370 54469647 -89812842 + L1P2 LINE L1 5421 5697 -458 22 0 0 0 chr12 54469779 54469801 -89812688 + GC_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr12 54470150 54470195 -89812294 + GC_rich Low_complexity Low_complexity 1 45 0 9633 111 19 29 chr12 54470307 54471457 -89811032 + Tigger1 DNA MER2_type 481 1640 -778 2462 78 0 0 chr12 54471457 54471753 -89810736 - AluSc SINE Alu -13 296 1 9633 111 19 29 chr12 54471753 54471951 -89810538 + Tigger1 DNA MER2_type 1640 1816 -602 1879 119 14 4 chr12 54471951 54472229 -89810260 - AluJb SINE Alu -14 298 18 9633 111 19 29 chr12 54472229 54472372 -89810117 + Tigger1 DNA MER2_type 1816 1959 -459 1047 148 0 12 chr12 54472372 54472541 -89809948 - FRAM SINE Alu -3 173 7 1978 133 0 31 chr12 54472541 54472858 -89809631 + Tigger1 DNA MER2_type 1951 2257 -161 282 301 47 80 chr12 54472865 54473141 -89809348 - AluSq SINE Alu 0 303 37 12979 141 10 18 chr12 54473574 54474219 -89808270 - L1MA2 LINE L1 -20 6284 5635 2241 99 6 40 chr12 54474219 54474542 -89807947 - AluSx SINE Alu 0 312 1 12979 141 10 18 chr12 54474542 54477183 -89805306 - L1MA2 LINE L1 -669 5635 3023 4031 93 0 8 chr12 54477189 54477703 -89804786 - MER9 LTR ERVK 0 511 2 2295 113 12 3 chr12 54477704 54478039 -89804450 - HERVK9 LTR ERVK 0 5916 4923 17890 67 3 1 chr12 54478080 54480711 -89801778 - HERVK9 LTR ERVK -282 5634 2950 11031 57 1 1 chr12 54480712 54482157 -89800332 - HERVK9 LTR ERVK -3137 2779 1268 4785 73 0 0 chr12 54482157 54482749 -89799740 - HERVK9 LTR ERVK -5324 592 1 3958 97 0 10 chr12 54482749 54483265 -89799224 - MER9 LTR ERVK 0 511 1 14257 133 29 24 chr12 54483265 54483786 -89798703 - L1 LINE L1 -3124 4441 3924 1831 175 0 3 chr12 54483786 54484078 -89798411 - AluJb SINE Alu -21 291 1 14257 133 29 24 chr12 54484078 54484690 -89797799 - L1 LINE L1 -3641 3924 3317 2192 118 23 0 chr12 54484690 54484995 -89797494 - AluSp SINE Alu 0 313 2 14257 133 29 24 chr12 54484995 54486834 -89795655 - L1 LINE L1 -4248 3317 1456 647 110 0 0 chr12 54486835 54486917 -89795572 + AluSq/x SINE Alu 29 110 -202 281 179 0 54 chr12 54486922 54486978 -89795511 + L2 LINE L2 3168 3220 -52 1883 158 17 3 chr12 54487013 54487310 -89795179 + AluSx SINE Alu 1 301 -11 726 176 32 0 chr12 54487310 54487435 -89795054 - L1 LINE L1 -6100 1465 1337 759 117 18 0 chr12 54487607 54487718 -89794771 - FLAM_A SINE Alu -10 132 20 441 0 0 0 chr12 54490075 54490124 -89792365 + (TG)n Simple_repeat Simple_repeat 2 50 0 202 277 92 0 chr12 54490583 54490648 -89791841 + L2 LINE L2 3230 3300 -13 23 0 0 0 chr12 54491256 54491279 -89791210 + AT_rich Low_complexity Low_complexity 1 23 0 198 341 134 0 chr12 54491751 54491833 -89790656 + L2 LINE L2 3134 3226 -46 209 214 0 0 chr12 54493093 54493135 -89789354 - L3 LINE CR1 -12 1565 1524 349 326 5 38 chr12 54493314 54493498 -89788991 + GA-rich Low_complexity Low_complexity 1 178 0 397 269 27 25 chr12 54493640 54493822 -89788667 - MIR SINE MIR 0 262 18 635 299 53 20 chr12 54493863 54494107 -89788382 - MIR SINE MIR -3 259 8 180 77 0 0 chr12 54495386 54495412 -89787077 + (TC)n Simple_repeat Simple_repeat 2 27 0 190 0 67 0 chr12 54495412 54495442 -89787047 + (CA)n Simple_repeat Simple_repeat 1 32 0 420 293 177 5 chr12 54496313 54496528 -89785961 - L2 LINE L2 -812 2502 2251 291 304 121 28 chr12 54496584 54496769 -89785720 + MIR SINE MIR 17 219 -43 328 289 41 0 chr12 54497075 54497172 -89785317 - MIR3 SINE MIR -15 193 93 1924 186 34 135 chr12 54497354 54497968 -89784521 - L1MC4 LINE L1 -182 7860 7309 856 115 28 84 chr12 54497969 54498178 -89784311 - MER6 DNA MER2_type 0 865 -65 1202 204 112 13 chr12 54498225 54498529 -89783960 - L1MC4 LINE L1 -938 7104 6771 537 143 77 0 chr12 54498538 54498629 -89783860 + FLAM_A SINE Alu 45 142 0 735 243 84 34 chr12 54498641 54498880 -89783609 - L1MC4a LINE L1 -1113 6695 6445 279 161 36 18 chr12 54500139 54500195 -89782294 + MER81 DNA DNA 58 114 0 228 189 226 0 chr12 54500205 54500258 -89782231 + MER81 DNA DNA 46 110 -4 943 192 0 0 chr12 54500645 54500801 -89781688 + FRAM SINE Alu 12 167 -9 330 188 256 0 chr12 54500888 54501005 -89781484 - Charlie1 DNA MER1_type -24 2737 2591 845 167 7 20 chr12 54501017 54501167 -89781322 + FAM SINE Alu 26 173 -12 698 183 0 0 chr12 54501189 54501293 -89781196 + FLAM_A SINE Alu 21 124 -18 1097 164 49 57 chr12 54501297 54501417 -89781072 - Charlie1 DNA MER1_type -161 2600 2481 216 0 0 0 chr12 54501417 54501441 -89781048 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2284 101 0 0 chr12 54501443 54501731 -89780758 - AluSx SINE Alu -24 288 1 1097 164 49 57 chr12 54501731 54501851 -89780638 - Charlie1 DNA MER1_type -281 2480 2359 563 159 0 0 chr12 54501851 54501939 -89780550 - Tigger7 DNA MER2_type 0 2487 2400 298 263 0 0 chr12 54501939 54502015 -89780474 + L1MC4 LINE L1 6628 6703 -1339 580 217 172 70 chr12 54502024 54502338 -89780151 + MER7A DNA MER2_type 1 344 -2 1596 186 15 0 chr12 54502351 54502615 -89779874 - Tigger7 DNA MER2_type -2219 268 1 266 259 35 0 chr12 54502640 54502698 -89779791 - Charlie1 DNA MER1_type -2701 60 1 2232 179 11 13 chr12 54502763 54503143 -89779346 - MSTD LTR MaLR -17 379 1 331 0 0 75 chr12 54504439 54504492 -89777997 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1556 158 7 48 chr12 54504492 54504784 -89777705 - AluJb SINE Alu -32 280 1 280 205 0 60 chr12 54505115 54505198 -89777291 - MARNA DNA Mariner -30 556 479 2591 126 6 6 chr12 54506158 54506524 -89775965 + MER47A DNA MER2_type 1 366 0 2264 112 0 0 chr12 54507348 54507643 -89774846 + AluSx SINE Alu 1 295 -17 1383 272 45 36 chr12 54507790 54508796 -89773693 + L1ME LINE L1 4780 5802 -360 1840 172 3 3 chr12 54509785 54510088 -89772401 - AluSx SINE Alu -9 303 1 1280 107 53 15 chr12 54511394 54511600 -89770889 - MER20 DNA MER1_type -5 214 1 21 0 0 0 chr12 54511618 54511639 -89770850 + AT_rich Low_complexity Low_complexity 1 21 0 577 253 139 0 chr12 54511729 54511887 -89770602 + MER5A DNA MER1_type 4 183 -6 303 303 15 96 chr12 54512575 54512773 -89769716 + MER5A DNA MER1_type 1 182 -7 286 267 241 21 chr12 54512782 54512969 -89769520 + L2 LINE L2 2579 2806 -508 22 0 0 0 chr12 54513194 54513216 -89769273 + AT_rich Low_complexity Low_complexity 1 22 0 2331 89 7 0 chr12 54517129 54517433 -89765056 + AluSp SINE Alu 1 306 -7 1141 61 0 0 chr12 54517713 54517845 -89764644 + AluY SINE Alu 1 132 -179 2313 96 0 3 chr12 54517851 54518153 -89764336 + AluY SINE Alu 3 303 -8 1214 130 66 2 chr12 54518524 54519049 -89763440 + L1MB8 LINE L1 5495 6176 -2 1547 169 84 0 chr12 54521008 54521281 -89761208 - AluJb SINE Alu -16 296 1 1023 152 6 35 chr12 54522267 54522438 -89760051 - FRAM SINE Alu 0 166 1 1814 104 0 16 chr12 54523286 54523559 -89758930 - AluSq SINE Alu 0 313 45 2239 107 3 16 chr12 54523948 54524258 -89758231 + AluSx SINE Alu 1 306 -6 338 280 68 17 chr12 54524597 54524715 -89757774 + MIR SINE MIR 19 142 -66 402 143 0 0 chr12 54525572 54525649 -89756840 + (T)n Simple_repeat Simple_repeat 1 77 0 1924 148 13 30 chr12 54529286 54529591 -89752898 + AluSx SINE Alu 1 300 -12 538 328 64 16 chr12 54532439 54532689 -89749800 + MIR SINE MIR 1 262 0 199 301 60 0 chr12 54532714 54532797 -89749692 + MIR SINE MIR 156 243 -19 189 0 0 0 chr12 54533302 54533323 -89749166 + (T)n Simple_repeat Simple_repeat 1 21 0 189 74 0 0 chr12 54536490 54536517 -89745972 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1234 201 5 18 chr12 54536691 54536915 -89745574 + AluJb SINE Alu 85 305 -7 396 287 187 12 chr12 54536954 54537205 -89745284 - L2 LINE L2 -3 3310 3016 1648 151 26 39 chr12 54537217 54537528 -89744961 + AluJo SINE Alu 1 307 -5 1026 316 134 26 chr12 54537584 54537753 -89744736 - L2 LINE L2 -417 2897 2748 2312 103 0 19 chr12 54537753 54538063 -89744426 - AluSx SINE Alu -8 304 1 1026 316 134 26 chr12 54538063 54538706 -89743783 - L2 LINE L2 -566 2748 1997 868 211 12 0 chr12 54538706 54538877 -89743612 + FAM SINE Alu 1 173 -2 2129 154 0 3 chr12 54538877 54539188 -89743301 + AluSx SINE Alu 1 310 -2 266 317 17 25 chr12 54540102 54540222 -89742267 - MIR SINE MIR -14 248 130 329 247 100 40 chr12 54540671 54540778 -89741711 - MER103 DNA DNA 0 166 46 1802 168 14 7 chr12 54540778 54541070 -89741419 + AluJb SINE Alu 1 294 -18 329 247 100 40 chr12 54541070 54541112 -89741377 - MER103 DNA DNA -120 46 8 635 201 216 15 chr12 54541135 54541339 -89741150 - MIR SINE MIR 0 262 18 1537 217 80 101 chr12 54541564 54542130 -89740359 - MLT2B3 LTR ERVL 0 554 1 41087 83 18 6 chr12 54542130 54546787 -89735702 - HERVL-B3-B3 LTR ERVL 0 5654 916 2339 105 0 0 chr12 54546787 54547082 -89735407 + AluSx SINE Alu 1 295 -17 41087 83 18 6 chr12 54547082 54548010 -89734479 - HERVL-B3-B3 LTR ERVL -4738 916 1 1716 213 135 48 chr12 54548011 54548514 -89733975 - MLT2B3 LTR ERVL -7 547 1 273 367 86 0 chr12 54548926 54549054 -89733435 - L3b LINE CR1 -126 1457 1319 1104 140 47 0 chr12 54549329 54549500 -89732989 - AluSg/x SINE Alu 0 310 132 2059 111 59 7 chr12 54549500 54549789 -89732700 - AluSx SINE Alu -8 304 1 226 333 17 0 chr12 54550141 54550258 -89732231 + L1ME LINE L1 5757 5875 -295 731 162 0 44 chr12 54550313 54550449 -89732040 + FLAM_C SINE Alu 3 132 -11 666 138 0 9 chr12 54550652 54550768 -89731721 + FLAM_A SINE Alu 28 142 0 2082 133 3 3 chr12 54550849 54551142 -89731347 - AluSx SINE Alu -19 293 1 22 0 0 0 chr12 54554723 54554745 -89727744 + AT_rich Low_complexity Low_complexity 1 22 0 218 122 24 0 chr12 54555541 54555582 -89726907 + (TA)n Simple_repeat Simple_repeat 2 43 0 215 150 25 0 chr12 54557213 54557253 -89725236 + (TG)n Simple_repeat Simple_repeat 1 41 0 829 174 18 12 chr12 54557310 54557477 -89725012 + MIR SINE MIR 48 215 -47 342 250 260 21 chr12 54558286 54558478 -89724011 + MIR SINE MIR 22 259 -3 2187 95 0 26 chr12 54558512 54558817 -89723672 + AluSx SINE Alu 2 298 -14 22 0 0 0 chr12 54559066 54559088 -89723401 + GC_rich Low_complexity Low_complexity 1 22 0 44 26 0 39 chr12 54559341 54559418 -89723071 + GC_rich Low_complexity Low_complexity 1 74 0 482 189 55 8 chr12 54560393 54560520 -89721969 - FLAM_C SINE Alu 0 133 1 188 256 0 0 chr12 54560919 54560962 -89721527 + L2 LINE L2 3268 3310 -3 833 123 0 8 chr12 54560968 54561090 -89721399 - FLAM_C SINE Alu -11 132 12 180 0 0 0 chr12 54561421 54561441 -89721048 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 2118 120 0 0 chr12 54561443 54561717 -89720772 - AluSx SINE Alu -34 278 5 198 309 15 15 chr12 54561788 54561856 -89720633 - L2 LINE L2 -4 3268 3201 227 289 96 19 chr12 54561930 54562034 -89720455 + L2 LINE L2 3141 3252 -20 203 194 119 15 chr12 54562606 54562673 -89719816 - L2 LINE L2 -1 3271 3198 221 320 17 39 chr12 54564945 54565123 -89717366 + GA-rich Low_complexity Low_complexity 2 175 0 22 35 0 0 chr12 54565595 54565624 -89716865 + GC_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 54566021 54566049 -89716440 + GC_rich Low_complexity Low_complexity 1 28 0 283 228 38 0 chr12 54566704 54566783 -89715706 + G-rich Low_complexity Low_complexity 5 86 0 29 28 0 0 chr12 54566876 54566912 -89715577 + GC_rich Low_complexity Low_complexity 1 36 0 202 226 65 0 chr12 54568141 54568203 -89714286 + MIR SINE MIR 36 101 -107 197 398 16 16 chr12 54568943 54569071 -89713418 - L2 LINE L2 -219 3053 2926 291 279 74 25 chr12 54569119 54569241 -89713248 - MER91B DNA MER1_type -52 138 11 2241 118 0 0 chr12 54569783 54570087 -89712402 + AluSq SINE Alu 1 304 -9 505 198 72 0 chr12 54571644 54571755 -89710734 + MER45A DNA AcHobo 60 178 0 2084 89 0 62 chr12 54571869 54572208 -89710281 - AluSx SINE Alu 0 320 1 353 224 9 47 chr12 54572509 54572616 -89709873 + MIR3 SINE MIR 106 208 0 195 333 0 0 chr12 54573102 54573156 -89709333 + MIR SINE MIR 16 69 -139 1855 113 4 26 chr12 54573735 54574000 -89708489 - AluJo SINE Alu -12 300 42 237 217 0 98 chr12 54576456 54576548 -89705941 - MIR SINE MIR -116 92 10 493 254 28 18 chr12 54577114 54577267 -89705222 + MIR SINE MIR 11 162 -46 2005 90 115 11 chr12 54577276 54577555 -89704934 + AluSg SINE Alu 1 308 -2 1874 164 3 7 chr12 54577567 54577854 -89704635 + AluJo SINE Alu 1 286 -26 475 312 43 0 chr12 54577882 54578020 -89704469 - MIR SINE MIR -35 227 84 257 246 15 15 chr12 54578303 54578368 -89704121 - MIR SINE MIR -112 150 86 1601 144 44 38 chr12 54578553 54578894 -89703595 + L1MC3 LINE L1 7051 7393 -392 2068 135 3 0 chr12 54578894 54579190 -89703299 + AluSx SINE Alu 1 297 -15 205 299 216 0 chr12 54579809 54579906 -89702583 + MIR3 SINE MIR 58 175 -33 302 261 45 34 chr12 54579925 54580013 -89702476 + MIR SINE MIR 8 96 -166 1912 131 0 59 chr12 54580368 54580684 -89701805 - AluSx SINE Alu -11 301 15 226 360 221 21 chr12 54581995 54582284 -89700205 - L2 LINE L2 0 3272 2926 320 295 66 16 chr12 54582332 54582454 -89700035 - MER91B DNA MER1_type -52 138 11 2193 83 3 35 chr12 54582997 54583309 -89699180 + AluSq SINE Alu 1 302 -11 357 339 42 0 chr12 54583914 54584032 -89698457 + MIR SINE MIR 15 137 -125 890 150 0 0 chr12 54584038 54584171 -89698318 - AluSq/x SINE Alu -180 133 1 182 324 86 0 chr12 54584171 54584276 -89698213 + MIR SINE MIR 122 235 -27 180 274 221 44 chr12 54584285 54584398 -89698091 + MIR3 SINE MIR 58 190 -18 484 256 74 47 chr12 54584458 54584670 -89697819 - MIR SINE MIR -43 219 5 234 283 56 62 chr12 54585375 54585518 -89696971 + MIR3 SINE MIR 39 179 -29 182 218 18 73 chr12 54585605 54585660 -89696829 + MIR3 SINE MIR 157 208 0 323 227 0 11 chr12 54586396 54586484 -89696005 + GA-rich Low_complexity Low_complexity 4 90 0 1117 172 83 40 chr12 54586485 54586653 -89695836 + L1MA8 LINE L1 5953 6112 -179 2278 108 0 0 chr12 54586653 54586959 -89695530 + AluSx SINE Alu 2 307 -5 1117 172 83 40 chr12 54586959 54587115 -89695374 + L1MA8 LINE L1 6112 6291 0 2238 94 3 3 chr12 54587136 54587435 -89695054 - AluSg SINE Alu -11 299 1 1529 174 49 24 chr12 54587440 54587607 -89694882 - AluJb SINE Alu -8 294 116 189 0 0 0 chr12 54587607 54587628 -89694861 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1529 174 49 24 chr12 54587628 54587747 -89694742 - AluJb SINE Alu -186 116 1 244 287 79 20 chr12 54588077 54588178 -89694311 - MIR SINE MIR -68 140 34 503 250 113 0 chr12 54588321 54588481 -89694008 + L2 LINE L2 1530 1707 -1607 889 189 7 0 chr12 54588499 54588652 -89693837 - AluJb SINE Alu -25 287 134 1991 142 7 0 chr12 54588652 54588962 -89693527 - AluSq SINE Alu -1 312 1 1861 267 221 8 chr12 54588979 54589683 -89692806 + L2 LINE L2 1728 2281 -1032 1828 159 3 19 chr12 54589683 54589998 -89692491 - AluJb SINE Alu -2 310 1 1861 267 221 8 chr12 54589998 54590591 -89691898 + L2 LINE L2 2281 3312 -1 978 167 0 0 chr12 54590603 54590783 -89691706 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 439 340 31 0 chr12 54591491 54591650 -89690839 - MIR SINE MIR -50 212 49 188 297 47 0 chr12 54592088 54592152 -89690337 - MIR SINE MIR -163 99 33 1035 218 15 0 chr12 54592173 54592379 -89690110 - MER3 DNA MER1_type 0 209 1 2144 114 0 13 chr12 54592447 54592754 -89689735 - AluSq SINE Alu -9 304 2 222 274 123 0 chr12 54593316 54593389 -89689100 - L2 LINE L2 0 3272 3191 187 333 107 23 chr12 54595952 54596129 -89686360 + L2 LINE L2 2417 2608 -706 466 199 34 48 chr12 54596971 54597098 -89685391 - Charlie4 DNA MER1_type -3 1958 1832 2222 98 7 0 chr12 54597098 54597394 -89685095 + AluSp SINE Alu 1 298 -15 466 199 34 48 chr12 54597394 54597412 -89685077 - Charlie4 DNA MER1_type -129 1832 1815 415 278 243 0 chr12 54597943 54598116 -89684373 - MIR SINE MIR -16 246 32 183 80 0 0 chr12 54598689 54598714 -89683775 + (TCTCC)n Simple_repeat Simple_repeat 2 26 0 286 269 83 41 chr12 54598715 54598860 -89683629 + L2 LINE L2 2305 2455 -859 247 232 0 58 chr12 54599836 54599905 -89682584 + L2 LINE L2 3207 3271 -1 1918 112 10 37 chr12 54599912 54600206 -89682283 + AluSx SINE Alu 14 299 -13 804 156 0 8 chr12 54600436 54600558 -89681931 + FLAM_C SINE Alu 1 121 -22 331 302 86 10 chr12 54600744 54600878 -89681611 - MIR SINE MIR -62 146 44 224 287 21 43 chr12 54601188 54601282 -89681207 - MIR SINE MIR -67 195 104 222 302 0 0 chr12 54602576 54602639 -89679850 + G-rich Low_complexity Low_complexity 6 68 0 289 325 125 29 chr12 54602746 54603131 -89679358 - L2 LINE L2 -1 3271 2850 21 0 0 0 chr12 54605162 54605183 -89677306 + GC_rich Low_complexity Low_complexity 1 21 0 37 52 0 0 chr12 54605218 54605276 -89677213 + GC_rich Low_complexity Low_complexity 1 58 0 422 228 0 91 chr12 54605420 54605675 -89676814 + C-rich Low_complexity Low_complexity 1 231 0 258 253 0 13 chr12 54605798 54605873 -89676616 + G-rich Low_complexity Low_complexity 3 76 0 21 57 0 0 chr12 54605943 54605978 -89676511 + GC_rich Low_complexity Low_complexity 1 35 0 421 292 39 15 chr12 54606362 54606492 -89675997 - L2 LINE L2 -3 3269 3137 303 256 256 16 chr12 54607146 54607267 -89675222 - MIR3 SINE MIR -9 199 50 376 304 12 41 chr12 54608356 54608527 -89673962 + GA-rich Low_complexity Low_complexity 2 167 0 315 284 37 18 chr12 54609191 54609300 -89673189 + L2 LINE L2 2949 3059 -213 2239 126 0 0 chr12 54610094 54610403 -89672086 + AluSx SINE Alu 1 309 -3 478 285 80 7 chr12 54610624 54610818 -89671671 + MIR SINE MIR 18 222 -40 295 228 186 49 chr12 54611056 54611158 -89671331 + FLAM_A SINE Alu 15 74 -58 279 198 11 44 chr12 54611161 54611252 -89671237 - L1ME4a LINE L1 -48 6073 5986 867 187 6 6 chr12 54611253 54611419 -89671070 + AluYa5 SINE Alu 131 296 -15 314 279 108 23 chr12 54611426 54611555 -89670934 - L1ME4a LINE L1 -382 5739 5600 180 182 0 45 chr12 54611595 54611639 -89670850 + L2 LINE L2 3027 3068 -204 901 193 126 17 chr12 54611844 54612083 -89670406 - HsTC2 DNA Tc2 -115 1783 1519 2271 103 0 7 chr12 54612093 54612394 -89670095 + AluSx SINE Alu 1 299 -13 2083 105 0 10 chr12 54612397 54612692 -89669797 + AluSx SINE Alu 1 292 -20 1369 183 61 58 chr12 54612703 54612739 -89669750 - MLT1F1 LTR MaLR -6 561 527 1900 95 4 0 chr12 54612739 54612992 -89669497 + AluSp SINE Alu 1 254 -59 1369 183 61 58 chr12 54612992 54613332 -89669157 - MLT1F1 LTR MaLR -40 527 184 2031 121 3 29 chr12 54613357 54613672 -89668817 - AluSx SINE Alu -5 307 1 1025 99 0 0 chr12 54613674 54613805 -89668684 - AluSq/x SINE Alu -180 132 2 1388 149 4 4 chr12 54613851 54614079 -89668410 - AluJb SINE Alu -11 301 74 418 282 124 13 chr12 54614080 54614314 -89668175 + MLT1L LTR MaLR 193 452 -163 1025 202 40 86 chr12 54614319 54614361 -89668128 + L1ME2 LINE L1 5778 5820 -344 817 163 23 0 chr12 54614361 54614490 -89667999 + FLAM_C SINE Alu 2 133 0 1025 202 40 86 chr12 54614490 54614502 -89667987 + L1ME2 LINE L1 5820 5831 -333 2394 63 0 3 chr12 54614502 54614803 -89667686 + AluY SINE Alu 1 300 -11 1025 202 40 86 chr12 54614803 54615106 -89667383 + L1ME2 LINE L1 5831 6119 -45 1846 170 0 6 chr12 54615106 54615417 -89667072 + AluJb SINE Alu 1 309 -3 1025 202 40 86 chr12 54615417 54615453 -89667036 + L1ME2 LINE L1 6119 6155 -9 441 255 134 7 chr12 54615505 54615654 -89666835 + MLT1L LTR MaLR 438 605 -10 315 245 91 56 chr12 54615810 54615953 -89666536 + MIR SINE MIR 98 245 -17 782 218 10 63 chr12 54616272 54616400 -89666089 + MIR SINE MIR 64 178 -84 2008 138 3 10 chr12 54616400 54616678 -89665811 + AluSg SINE Alu 1 278 -32 279 0 0 0 chr12 54616678 54616709 -89665780 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2008 138 3 10 chr12 54616709 54616742 -89665747 + AluSg SINE Alu 278 310 0 782 218 10 63 chr12 54616742 54616819 -89665670 + MIR SINE MIR 178 258 -4 26 30 0 0 chr12 54618107 54618140 -89664349 + GC_rich Low_complexity Low_complexity 1 33 0 239 277 138 53 chr12 54620064 54620252 -89662237 + L2 LINE L2 2554 2757 -557 1555 159 3 89 chr12 54620427 54620754 -89661735 + AluJb SINE Alu 1 299 -13 950 129 7 0 chr12 54620754 54620883 -89661606 - AluJo/FRAM SINE Alu -24 288 156 312 235 133 0 chr12 54620918 54621016 -89661473 + Charlie8 DNA MER1_type 137 247 -2170 1360 179 0 17 chr12 54621458 54621698 -89660791 - AluJo SINE Alu -23 289 54 215 280 183 0 chr12 54622507 54622600 -89659889 - MIR SINE MIR -73 189 80 21 104 0 0 chr12 54623191 54623268 -89659221 + GC_rich Low_complexity Low_complexity 1 77 0 610 295 176 26 chr12 54623794 54624506 -89657983 + L2 LINE L2 2470 3297 -16 274 356 48 14 chr12 54624675 54624821 -89657668 - MIR SINE MIR 0 262 112 219 222 0 0 chr12 54625551 54625596 -89656893 + MIR3 SINE MIR 112 156 -52 390 272 63 48 chr12 54626448 54626616 -89655873 + MIR SINE MIR 27 194 -63 274 260 62 0 chr12 54626786 54626882 -89655607 - MER112 DNA MER1_type -151 109 8 204 266 64 73 chr12 54627493 54627602 -89654887 - MIR3 SINE MIR -97 111 4 22 0 0 0 chr12 54627813 54627835 -89654654 + GC_rich Low_complexity Low_complexity 1 22 0 2081 132 0 7 chr12 54628496 54628806 -89653683 + AluSq SINE Alu 1 308 -5 1060 116 19 0 chr12 54628809 54628964 -89653525 + AluSg/x SINE Alu 136 293 -19 2160 115 7 0 chr12 54629368 54629673 -89652816 + AluSg SINE Alu 1 307 -3 258 143 0 0 chr12 54629801 54629843 -89652646 - Alu SINE Alu -260 42 1 196 204 20 0 chr12 54629893 54629942 -89652547 + L2 LINE L2 3264 3313 0 2355 50 0 0 chr12 54630104 54630408 -89652081 + AluY SINE Alu 2 305 0 804 241 6 0 chr12 54630481 54630655 -89651834 + MER5B DNA MER1_type 2 176 -2 2062 119 14 3 chr12 54630661 54630954 -89651535 + AluJb SINE Alu 1 296 -16 492 118 0 0 chr12 54631035 54631103 -89651386 - FLAM SINE Alu -14 129 62 202 211 0 28 chr12 54631103 54631174 -89651315 + (TG)n Simple_repeat Simple_repeat 2 70 0 265 283 58 72 chr12 54631177 54631400 -89651089 - L1MC/D LINE L1 -1916 5892 5673 806 139 0 43 chr12 54631416 54631557 -89650932 - FLAM_C SINE Alu -12 131 1 723 286 101 40 chr12 54631570 54631854 -89650635 - L1MC/D LINE L1 -2133 5675 5365 2288 92 3 16 chr12 54631854 54632170 -89650319 - AluSp SINE Alu -1 312 1 723 286 101 40 chr12 54632170 54632231 -89650258 - L1MC/D LINE L1 -2443 5365 5309 1593 153 17 51 chr12 54632232 54632570 -89649919 - AluSx SINE Alu 0 312 9 354 367 53 6 chr12 54632614 54632783 -89649706 + L1MEd LINE L1 2 178 -5941 267 363 93 26 chr12 54632877 54633164 -89649325 + L1MEd LINE L1 298 613 -5506 261 0 0 0 chr12 54633164 54633193 -89649296 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 267 363 93 26 chr12 54633193 54633249 -89649240 + L1MEd LINE L1 613 664 -5455 1442 147 151 11 chr12 54633304 54633569 -89648920 + AluJb SINE Alu 1 302 0 2367 68 3 3 chr12 54633661 54633969 -89648520 + AluSq SINE Alu 1 308 -5 302 238 134 79 chr12 54635865 54636029 -89646460 + MIR3 SINE MIR 36 208 0 274 109 91 0 chr12 54636977 54637032 -89645457 + L2 LINE L2 3197 3256 -16 1122 190 50 50 chr12 54637034 54637292 -89645197 + MIR SINE MIR 1 258 -4 436 141 0 0 chr12 54638263 54638334 -89644155 + AluSp/q SINE Alu 225 295 -18 2392 227 101 34 chr12 54638344 54638565 -89643924 - L1MDa LINE L1 -5128 1412 1207 2036 128 7 7 chr12 54638565 54638871 -89643618 - AluSq SINE Alu -7 306 1 2392 227 101 34 chr12 54638871 54639515 -89642974 - L1MDa LINE L1 -5333 1207 239 1099 110 0 0 chr12 54639911 54640065 -89642424 + AluSp SINE Alu 152 305 -8 344 287 19 37 chr12 54640076 54640242 -89642247 + L1ME1 LINE L1 5771 5916 -250 317 71 0 0 chr12 54640425 54640467 -89642022 + Alu SINE Alu 1 42 -266 1917 119 3 32 chr12 54640471 54640619 -89641870 - THE1C LTR MaLR -73 302 166 2051 107 20 13 chr12 54640619 54640919 -89641570 + AluSx SINE Alu 2 303 -9 1917 119 3 32 chr12 54640919 54641081 -89641408 - THE1C LTR MaLR -209 166 1 547 171 11 35 chr12 54641081 54641239 -89641250 - MLT1A1 LTR MaLR -173 201 2 770 317 88 38 chr12 54641240 54641666 -89640823 + L1MC4a LINE L1 4512 4915 -1231 1872 156 40 79 chr12 54641666 54642070 -89640419 - MLT1B LTR MaLR -2 388 1 770 317 88 38 chr12 54642070 54642883 -89639606 + L1MC4a LINE L1 4915 5397 -749 2837 119 18 104 chr12 54642938 54643536 -89638953 + LTR10A LTR ERV1 1 547 -62 297 238 0 9 chr12 54643564 54643658 -89638831 - MLT1J LTR MaLR -269 180 72 2262 97 7 0 chr12 54643974 54644284 -89638205 + AluSp SINE Alu 1 312 -1 1616 158 16 44 chr12 54644820 54645136 -89637353 + AluJo SINE Alu 1 307 -5 31 96 0 0 chr12 54645375 54645469 -89637020 + AT_rich Low_complexity Low_complexity 1 94 0 2239 109 0 0 chr12 54645597 54645908 -89636581 - AluSq SINE Alu -2 311 1 927 167 0 0 chr12 54645912 54646068 -89636421 - AluJb SINE Alu -21 291 136 198 272 78 39 chr12 54648725 54648828 -89633661 + MIR3 SINE MIR 98 204 -4 686 252 16 72 chr12 54649773 54650023 -89632466 + L1MC4a LINE L1 5679 5914 -1894 987 212 75 75 chr12 54650028 54650495 -89631994 - LTR37B LTR ERV1 0 468 2 407 263 110 51 chr12 54650510 54650746 -89631743 - MIR SINE MIR -11 251 2 1571 122 24 258 chr12 54650798 54650827 -89631662 - L1MC3 LINE L1 -187 7598 7564 2221 122 0 0 chr12 54650827 54651138 -89631351 - AluSx SINE Alu -1 311 1 1571 122 24 258 chr12 54651138 54651354 -89631135 - L1MC3 LINE L1 -221 7564 7470 899 132 0 0 chr12 54651354 54651483 -89631006 - AluJb SINE Alu -183 129 1 1571 122 24 258 chr12 54651483 54651824 -89630665 - L1MC3 LINE L1 -315 7470 7051 255 246 15 15 chr12 54652009 54652074 -89630415 + MIR SINE MIR 86 150 -112 483 312 43 0 chr12 54652357 54652495 -89629994 + MIR SINE MIR 84 227 -35 1752 164 3 7 chr12 54652523 54652810 -89629679 - AluJo SINE Alu -26 286 1 1876 92 114 11 chr12 54652820 54653101 -89629388 - AluSg SINE Alu 0 310 1 495 254 28 18 chr12 54653110 54653263 -89629226 - MIR SINE MIR -46 162 11 250 217 0 98 chr12 54653828 54653920 -89628569 + MIR SINE MIR 10 92 -116 1744 113 4 26 chr12 54656376 54656641 -89625848 + AluJo SINE Alu 42 300 -12 196 333 0 0 chr12 54657220 54657274 -89625215 - MIR SINE MIR -139 69 16 366 234 9 47 chr12 54657760 54657867 -89624622 - MIR3 SINE MIR 0 208 106 1947 89 0 62 chr12 54658168 54658507 -89623982 + AluSx SINE Alu 1 320 0 512 198 72 0 chr12 54658621 54658732 -89623757 - MER45A DNA AcHobo 0 178 60 2108 214 106 37 chr12 54659686 54660346 -89622143 + L1MDa LINE L1 226 1208 -5332 1945 134 10 7 chr12 54660346 54660651 -89621838 + AluSq SINE Alu 1 306 -7 2108 214 106 37 chr12 54660651 54660827 -89621662 + L1MDa LINE L1 1208 1370 -5170 645 220 9 44 chr12 54661270 54661497 -89620992 + L1MDa LINE L1 1194 1412 -5128 1740 132 10 10 chr12 54661507 54661802 -89620687 - AluSq SINE Alu -18 295 1 2845 150 73 19 chr12 54661802 54662375 -89620114 - Tigger3b DNA MER2_type -626 605 2 2178 212 46 73 chr12 54662375 54662487 -89620002 + L1M4 LINE L1 3745 3859 -2287 2327 93 3 0 chr12 54662487 54662799 -89619690 + AluSp SINE Alu 1 313 0 2178 212 46 73 chr12 54662799 54663475 -89619014 + L1M4 LINE L1 3859 4511 -1635 510 167 177 0 chr12 54663481 54663577 -89618912 - MER45A DNA AcHobo -65 113 1 1886 117 43 0 chr12 54663604 54663885 -89618604 + AluSx SINE Alu 3 295 -17 482 244 94 12 chr12 54664037 54664197 -89618292 - L3b LINE CR1 -192 1391 1219 500 242 75 79 chr12 54665116 54665368 -89617121 - MIR SINE MIR -5 257 7 228 232 283 0 chr12 54666871 54666970 -89615519 + MIR3 SINE MIR 30 156 -52 352 289 134 0 chr12 54667440 54667589 -89614900 - MIR SINE MIR -3 259 91 614 237 127 22 chr12 54667633 54667861 -89614628 - MIR SINE MIR -10 252 1 1289 130 33 9 chr12 54668274 54668489 -89614000 + AluJo SINE Alu 88 307 -5 283 262 298 0 chr12 54668678 54668819 -89613670 + MIR SINE MIR 80 262 0 375 264 49 49 chr12 54669324 54669487 -89613002 + MER5A DNA MER1_type 14 176 -13 251 318 28 19 chr12 54670113 54670220 -89612269 - L3b LINE CR1 -187 1396 1289 450 314 21 26 chr12 54670571 54670762 -89611727 + MIR3 SINE MIR 1 190 -18 477 0 0 0 chr12 54673662 54673740 -89608749 + (TTTAA)n Simple_repeat Simple_repeat 1 78 0 477 0 0 0 chr12 54673687 54673740 -89608749 + (TTTAA)n Simple_repeat Simple_repeat 3 55 0 1742 168 18 0 chr12 54673740 54674019 -89608470 - AluJo SINE Alu -25 287 1 290 234 78 0 chr12 54675450 54675527 -89606962 - MIR SINE MIR 0 262 180 614 218 134 11 chr12 54675547 54675671 -89606818 + MIR SINE MIR 4 158 -104 2183 109 0 19 chr12 54675671 54675984 -89606505 + AluSx SINE Alu 5 311 -1 614 218 134 11 chr12 54675984 54676038 -89606451 + MIR SINE MIR 158 204 -58 324 265 214 0 chr12 54676096 54676213 -89606276 - MIR SINE MIR -111 151 10 1015 242 83 0 chr12 54677244 54677484 -89605005 + MIR SINE MIR 3 262 0 892 224 73 31 chr12 54677536 54677792 -89604697 + MIR SINE MIR 2 260 -2 477 0 0 0 chr12 54678339 54678392 -89604097 + (TG)n Simple_repeat Simple_repeat 2 54 0 1596 158 14 21 chr12 54678396 54678680 -89603809 - AluJo SINE Alu -30 282 1 205 150 50 33 chr12 54678687 54678747 -89603742 + T-rich Low_complexity Low_complexity 2 62 0 481 292 25 0 chr12 54678856 54678976 -89603513 + L2 LINE L2 3150 3272 0 212 344 10 0 chr12 54678983 54679079 -89603410 + (CATATA)n Simple_repeat Simple_repeat 2 98 0 322 269 11 40 chr12 54679430 54679724 -89602765 + CT-rich Low_complexity Low_complexity 1 285 0 2065 141 3 0 chr12 54680708 54681020 -89601469 - AluSq SINE Alu 0 313 1 192 262 0 0 chr12 54682303 54682345 -89600144 + L2 LINE L2 3264 3305 -8 2002 130 0 4 chr12 54686310 54686616 -89595873 + AluSx SINE Alu 10 314 0 1083 198 126 49 chr12 54686636 54686926 -89595563 - AluJo SINE Alu 0 310 1 305 224 13 13 chr12 54686932 54687008 -89595481 + L1ME LINE L1 4616 4691 -1455 22 35 0 0 chr12 54687093 54687122 -89595367 + AT_rich Low_complexity Low_complexity 1 29 0 477 196 224 0 chr12 54687123 54687230 -89595259 + FLAM_C SINE Alu 2 132 -11 575 246 96 5 chr12 54687235 54687422 -89595067 - L1MC/D LINE L1 -2006 5802 5599 2167 103 4 0 chr12 54687556 54687869 -89594620 + AluSq SINE Alu 1 314 0 1981 146 9 35 chr12 54687879 54688194 -89594295 + AluJo SINE Alu 3 309 -3 2357 116 0 0 chr12 54688261 54688563 -89593926 + AluSx SINE Alu 1 302 -10 885 173 0 6 chr12 54688570 54688738 -89593751 + L1MB8 LINE L1 6010 6176 -2 669 313 71 46 chr12 54688739 54688960 -89593529 + L1ME LINE L1 4884 5098 -1068 2273 79 7 3 chr12 54688960 54689252 -89593237 + AluY SINE Alu 1 293 -18 669 313 71 46 chr12 54689252 54689773 -89592716 + L1ME LINE L1 5098 5642 -524 1080 129 20 50 chr12 54689774 54689975 -89592514 + Tigger2a DNA MER2_type 1 195 -239 2198 101 0 10 chr12 54689976 54690264 -89592225 + AluSx SINE Alu 1 285 -27 414 261 23 0 chr12 54690275 54690363 -89592126 + L1MC4 LINE L1 6614 6703 -1339 392 253 0 22 chr12 54690285 54690376 -89592113 - L1MC4 LINE L1 -1339 6703 6615 * 1412 126 54 0 chr12 54690395 54690634 -89591855 + Tigger2a DNA MER2_type 191 442 -2 288 315 105 17 chr12 54690662 54690843 -89591646 + L1ME LINE L1 5671 5867 -297 244 211 156 56 chr12 54691165 54691255 -89591234 + MIR SINE MIR 87 185 -77 2152 121 0 0 chr12 54692346 54692658 -89589831 + AluSx SINE Alu 1 312 0 210 317 153 11 chr12 54692702 54692885 -89589604 + L2 LINE L2 2764 2972 -342 429 295 0 16 chr12 54692936 54693065 -89589424 + MIR SINE MIR 28 154 -108 216 0 0 0 chr12 54693571 54693595 -89588894 + (A)n Simple_repeat Simple_repeat 1 24 0 1531 138 42 77 chr12 54693604 54693740 -89588749 + AluJb SINE Alu 1 140 -172 2288 123 0 0 chr12 54693740 54694049 -89588440 + AluSg SINE Alu 1 309 -1 1531 138 42 77 chr12 54694049 54694224 -89588265 + AluJb SINE Alu 140 301 -11 436 309 172 0 chr12 54694628 54694832 -89587657 - L1MC4 LINE L1 -1897 5911 5673 317 336 26 9 chr12 54694874 54694987 -89587502 + MIR SINE MIR 36 150 -112 623 226 68 0 chr12 54695591 54695737 -89586752 - MIR SINE MIR -11 251 96 720 288 22 16 chr12 54695825 54696009 -89586480 - MIR SINE MIR -71 191 7 213 219 0 0 chr12 54696135 54696176 -89586313 + (CA)n Simple_repeat Simple_repeat 2 42 0 1482 132 9 18 chr12 54696560 54696787 -89585702 - AluJo SINE Alu -1 311 87 2396 87 0 3 chr12 54696856 54697154 -89585335 - AluSx SINE Alu -15 297 1 2469 87 3 0 chr12 54697614 54697914 -89584575 - AluSp SINE Alu -10 303 3 294 125 0 0 chr12 54698877 54698925 -89583564 + (CA)n Simple_repeat Simple_repeat 1 48 0 374 256 116 25 chr12 54699234 54699355 -89583134 + L2 LINE L2 3141 3272 0 565 250 36 14 chr12 54700277 54700417 -89582072 + MIR SINE MIR 79 221 -41 362 236 45 22 chr12 54700453 54700542 -89581947 - MIR SINE MIR -71 191 101 377 305 20 66 chr12 54700578 54700729 -89581760 + MIR3 SINE MIR 35 178 -30 350 271 29 29 chr12 54702075 54702215 -89580274 - L1MEc LINE L1 -3933 2282 2180 1354 147 40 0 chr12 54702215 54702440 -89580049 - MER46A DNA MER2_type -1 235 2 350 271 29 29 chr12 54702440 54702578 -89579911 - L1MEc LINE L1 -4034 2181 2044 444 329 20 41 chr12 54702665 54702960 -89579529 - L1MEc LINE L1 -5396 809 521 365 153 0 28 chr12 54702981 54703053 -89579436 - AluSc SINE Alu 0 299 230 2335 102 0 31 chr12 54703110 54703433 -89579056 - AluSq SINE Alu 0 313 1 588 314 246 23 chr12 54703775 54704242 -89578247 + L2 LINE L2 1749 2110 -1204 2121 95 46 0 chr12 54704242 54704526 -89577963 - AluSx SINE Alu -15 297 1 588 314 246 23 chr12 54704526 54704810 -89577679 + L2 LINE L2 2110 2668 -646 225 336 172 0 chr12 54705323 54705451 -89577038 + L2 LINE L2 3164 3313 0 2481 82 0 22 chr12 54705726 54706043 -89576446 + AluSg SINE Alu 1 310 0 245 257 86 76 chr12 54706399 54706504 -89575985 + MIR SINE MIR 82 187 -75 617 250 24 28 chr12 54706516 54706714 -89575775 - MIR SINE MIR -1 261 63 1493 195 80 34 chr12 54706961 54707372 -89575117 + MLT1C LTR MaLR 6 435 -32 358 294 38 11 chr12 54707702 54707833 -89574656 - MIR SINE MIR -54 154 20 945 239 201 8 chr12 54707916 54708443 -89574046 - L1ME4a LINE L1 -2 6119 5491 230 291 70 32 chr12 54708494 54708652 -89573837 - L2 LINE L2 -619 2695 2532 32 0 0 0 chr12 54708828 54708860 -89573629 + GC_rich Low_complexity Low_complexity 1 32 0 225 273 23 23 chr12 54708862 54708990 -89573499 + G-rich Low_complexity Low_complexity 1 128 0 207 69 0 0 chr12 54709003 54709032 -89573457 + (CGG)n Simple_repeat Simple_repeat 2 30 0 338 202 66 63 chr12 54711934 54712084 -89570405 + MIR SINE MIR 36 181 -58 386 253 78 42 chr12 54713654 54713820 -89568669 - L2 LINE L2 -36 3277 3106 262 191 44 29 chr12 54713831 54713899 -89568590 + MIR SINE MIR 83 151 -111 645 153 82 41 chr12 54713919 54714043 -89568446 + MER82 DNA MER2_type 31 165 -488 1787 167 16 31 chr12 54714043 54714360 -89568129 - AluJb SINE Alu 0 312 1 645 153 82 41 chr12 54714360 54714405 -89568084 + MER82 DNA MER2_type 165 207 -446 278 137 0 0 chr12 54714387 54714438 -89568051 - Alu SINE Alu 0 302 252 * 226 118 0 0 chr12 54714460 54714494 -89567995 + AluSx SINE Alu 1 34 -269 1886 103 16 0 chr12 54714595 54714848 -89567641 + AluSg SINE Alu 51 307 -3 1579 153 4 0 chr12 54714849 54715084 -89567405 - AluJo SINE Alu -76 236 1 1978 191 50 19 chr12 54715085 54715503 -89566986 + MER82 DNA MER2_type 169 599 -54 1874 125 36 100 chr12 54715661 54715784 -89566705 - MER1B DNA MER1_type -2373 337 208 1966 83 15 23 chr12 54715784 54716049 -89566440 + AluSx SINE Alu 44 306 -6 1874 125 36 100 chr12 54716049 54716285 -89566204 - MER1B DNA MER1_type -2502 208 1 499 286 0 41 chr12 54716299 54716446 -89566043 - L2 LINE L2 -10 3303 3163 1242 234 144 44 chr12 54716493 54716992 -89565497 + MLT1E3 LTR MaLR 27 575 -49 1831 153 7 14 chr12 54717520 54717814 -89564675 + AluJo SINE Alu 1 292 -20 538 272 52 35 chr12 54717888 54718061 -89564428 - MIR SINE MIR 0 262 87 208 308 166 40 chr12 54718390 54718692 -89563797 + L2 LINE L2 2933 3272 0 259 279 0 15 chr12 54720254 54720322 -89562167 - L2 LINE L2 -20 3252 3186 368 167 128 20 chr12 54720480 54720582 -89561907 - L1MB4 LINE L1 0 6180 6068 2073 116 27 17 chr12 54720582 54720909 -89561580 - AluSx SINE Alu 0 312 1 2635 174 60 20 chr12 54720909 54721496 -89560993 - L1MB4 LINE L1 -240 5934 5325 870 201 0 28 chr12 54721498 54721677 -89560812 - FRAM SINE Alu -3 173 1 2876 189 49 27 chr12 54721679 54722413 -89560076 - L1MB4 LINE L1 -818 5328 4579 329 280 45 51 chr12 54722546 54722703 -89559786 + L1ME4a LINE L1 5966 6121 0 1069 230 47 64 chr12 54723526 54723816 -89558673 + L1MC5 LINE L1 7272 7554 -407 1984 164 0 0 chr12 54723816 54724115 -89558374 - AluJo SINE Alu -9 303 5 1069 230 47 64 chr12 54724115 54724246 -89558243 + L1MC5 LINE L1 7554 7686 -275 700 84 11 11 chr12 54724330 54724425 -89558064 + AluY SINE Alu 2 96 -215 386 282 26 8 chr12 54725289 54725406 -89557083 - MIR3 SINE MIR -49 159 41 529 172 0 0 chr12 54728106 54728193 -89554296 - MER8 DNA MER2_type -131 108 22 221 237 34 0 chr12 54728374 54728433 -89554056 - MIR SINE MIR -65 143 83 2549 69 0 0 chr12 54729483 54729789 -89552700 + AluY SINE Alu 1 306 -5 2441 92 0 0 chr12 54729804 54730107 -89552382 + AluSq SINE Alu 6 308 -5 714 307 32 20 chr12 54730159 54730410 -89552079 - MIR SINE MIR -3 259 6 2190 109 10 3 chr12 54730475 54730768 -89551721 + AluSq SINE Alu 1 295 -18 1451 242 73 58 chr12 54730980 54731294 -89551195 + MLT1G1 LTR MaLR 1 330 -265 1020 167 107 9 chr12 54731294 54731509 -89550980 + MER46A DNA MER2_type 1 236 0 1451 242 73 58 chr12 54731509 54731780 -89550709 + MLT1G1 LTR MaLR 330 595 0 947 193 0 6 chr12 54732265 54732426 -89550063 + FAM SINE Alu 6 165 -20 218 336 82 39 chr12 54732783 54732991 -89549498 + MIR SINE MIR 4 220 -42 598 239 0 29 chr12 54734348 54734486 -89548003 - MIR3 SINE MIR -22 186 53 256 360 10 50 chr12 54734595 54734648 -89547841 - MIR SINE MIR -7 255 206 824 148 0 0 chr12 54734648 54734770 -89547719 + FLAM_A SINE Alu 1 122 -11 256 360 10 50 chr12 54734770 54734816 -89547673 - MIR SINE MIR -56 206 160 1444 158 115 14 chr12 54734816 54735095 -89547394 + MER7A DNA MER2_type 1 305 -41 339 281 73 0 chr12 54735096 54735192 -89547297 - MIR SINE MIR -109 153 51 257 262 0 0 chr12 54737110 54737171 -89545318 - MIR SINE MIR -44 218 158 257 325 0 0 chr12 54737268 54737345 -89545144 - L2 LINE L2 -218 3054 2978 1556 158 4 0 chr12 54739802 54740073 -89542416 - AluSx SINE Alu 0 319 48 1222 171 16 40 chr12 54740131 54740383 -89542106 - AluJb SINE Alu -4 308 63 2629 50 0 7 chr12 54741071 54741373 -89541116 + AluY SINE Alu 1 300 -11 236 310 9 106 chr12 54741402 54741452 -89541037 - L2 LINE L2 -214 3058 3005 1918 109 4 4 chr12 54741452 54741709 -89540780 + AluSq SINE Alu 49 305 -8 2332 99 0 7 chr12 54741709 54742011 -89540478 + AluSx SINE Alu 1 300 -12 236 310 9 106 chr12 54742011 54742185 -89540304 - L2 LINE L2 -265 3007 2855 875 268 28 20 chr12 54742518 54742768 -89539721 + MIR SINE MIR 5 256 -6 2320 87 0 53 chr12 54744077 54744399 -89538090 + AluSx SINE Alu 1 305 -7 416 281 92 12 chr12 54744904 54745068 -89537421 - L2 LINE L2 0 3272 3096 790 268 47 0 chr12 54747493 54747683 -89534806 - MIR SINE MIR -58 204 6 2331 101 0 3 chr12 54748780 54749086 -89533403 - AluSq SINE Alu -8 305 1 834 65 0 0 chr12 54750183 54750290 -89532199 + U6 snRNA snRNA 1 107 0 1616 70 22 0 chr12 54750292 54750522 -89531967 + L1MA2 LINE L1 6070 6304 0 2406 81 3 3 chr12 54750714 54751021 -89531468 + AluSc SINE Alu 1 307 -2 632 288 15 25 chr12 54751118 54751316 -89531173 - MIR SINE MIR -53 209 14 902 162 21 0 chr12 54751364 54751506 -89530983 + AluSq/x SINE Alu 1 145 -167 1461 87 49 0 chr12 54751509 54751694 -89530795 + AluSq SINE Alu 1 194 -119 1136 159 20 5 chr12 54751812 54752007 -89530482 - AluY SINE Alu -13 298 101 1882 138 4 0 chr12 54752126 54752394 -89530095 - AluSx SINE Alu -43 269 1 226 279 171 0 chr12 54752394 54752505 -89529984 + MIR SINE MIR 101 230 -32 1689 160 7 40 chr12 54752687 54752987 -89529502 - AluJo SINE Alu -18 294 5 307 123 0 55 chr12 54753041 54753114 -89529375 + L1MC5 LINE L1 7614 7682 -279 821 69 10 0 chr12 54753199 54753300 -89529189 + AluY SINE Alu 1 102 -209 207 0 0 0 chr12 54753446 54753469 -89529020 + (A)n Simple_repeat Simple_repeat 1 23 0 2147 105 4 0 chr12 54753494 54753770 -89528719 - AluSq SINE Alu -36 277 1 2172 71 7 58 chr12 54753781 54754089 -89528400 - AluSx SINE Alu -13 299 8 1324 229 13 7 chr12 54754089 54754394 -89528095 + MLT2B1 LTR ERVL 5 311 -209 365 120 0 0 chr12 54754634 54754684 -89527805 + AluSp/q SINE Alu 228 277 -26 1999 139 13 10 chr12 54754709 54755012 -89527477 - AluJb SINE Alu -7 305 2 686 255 86 17 chr12 54755017 54755319 -89527170 - L1MC5 LINE L1 -315 7646 7324 951 240 58 70 chr12 54755474 54755791 -89526698 - L1MC5 LINE L1 -866 7095 6783 2160 136 0 0 chr12 54755791 54756099 -89526390 - AluSx SINE Alu -4 308 1 951 240 58 70 chr12 54756099 54756194 -89526295 - L1MC5 LINE L1 -1178 6783 6688 1804 158 17 7 chr12 54756620 54756911 -89525578 + AluJo SINE Alu 1 294 -18 1092 182 78 0 chr12 54757389 54757631 -89524858 - L1MA9 LINE L1 0 6312 6052 2454 80 0 16 chr12 54757882 54758195 -89524294 + AluSc SINE Alu 2 309 0 275 274 147 0 chr12 54760298 54760393 -89522096 - L2 LINE L2 -3 3310 3202 215 316 252 7 chr12 54761965 54762243 -89520246 - L3 LINE CR1 -2 1575 1230 774 301 35 16 chr12 54762268 54762524 -89519965 - MIR SINE MIR 0 262 2 396 292 58 23 chr12 54762721 54762892 -89519597 - L3 LINE CR1 -693 884 708 2354 77 37 0 chr12 54763027 54763325 -89519164 - AluSq SINE Alu -2 311 3 583 238 0 0 chr12 54763334 54763460 -89519029 - FLAM_C SINE Alu -16 127 2 1529 165 129 12 chr12 54764026 54764366 -89518123 - MLT2D LTR ERVL -2 412 33 1319 123 18 64 chr12 54764577 54764796 -89517693 + AluSg/x SINE Alu 99 307 -5 2433 110 0 0 chr12 54765484 54765794 -89516695 + AluSx SINE Alu 1 310 -2 1747 191 31 0 chr12 54765822 54766141 -89516348 - MLT1A1 LTR MaLR -36 329 1 241 278 0 0 chr12 54766141 54766195 -89516294 - L2 LINE L2 -570 2744 2691 2476 84 0 3 chr12 54766251 54766559 -89515930 + AluY SINE Alu 1 307 -4 2349 94 3 0 chr12 54766573 54766872 -89515617 + AluSq SINE Alu 1 300 -13 295 238 134 79 chr12 54768776 54768940 -89513549 + MIR3 SINE MIR 36 208 0 270 109 91 0 chr12 54769888 54769943 -89512546 + L2 LINE L2 3197 3256 -16 1121 190 50 50 chr12 54769945 54770203 -89512286 + MIR SINE MIR 1 258 -4 643 185 208 22 chr12 54774225 54774403 -89508086 + MER58C DNA MER1_type 4 214 -1 866 126 0 24 chr12 54776004 54776131 -89506358 - FRAM SINE Alu -15 161 38 1338 151 107 91 chr12 54776313 54776662 -89505827 - MSTB2 LTR MaLR 0 457 98 2400 83 0 0 chr12 54776662 54776952 -89505537 - AluSq SINE Alu -23 290 1 1338 151 107 91 chr12 54776952 54777052 -89505437 - MSTB2 LTR MaLR -359 98 1 2878 10 0 0 chr12 54777471 54777775 -89504714 - AluY SINE Alu -7 304 1 261 301 86 43 chr12 54778719 54778882 -89503607 - MIR SINE MIR -6 256 87 202 128 26 0 chr12 54779291 54779330 -89503159 + (CCG)n Simple_repeat Simple_repeat 1 40 0 24 85 0 0 chr12 54779332 54779391 -89503098 + GC_rich Low_complexity Low_complexity 1 59 0 31 44 0 0 chr12 54779415 54779460 -89503029 + GC_rich Low_complexity Low_complexity 1 45 0 2372 95 0 0 chr12 54780717 54781011 -89501478 - AluSx SINE Alu -18 294 1 291 229 43 0 chr12 54781459 54781529 -89500960 - MIR SINE MIR -100 108 36 404 352 13 6 chr12 54781640 54781799 -89500690 + L2 LINE L2 2638 2797 -517 609 336 92 42 chr12 54781959 54782219 -89500270 + L2 LINE L2 2811 3057 -256 2519 75 0 3 chr12 54782219 54782526 -89499963 - AluY SINE Alu -5 306 1 609 336 92 42 chr12 54782526 54782567 -89499922 + L2 LINE L2 3057 3094 -219 1989 96 100 0 chr12 54782567 54782838 -89499651 - AluSq SINE Alu -12 301 4 609 336 92 42 chr12 54782838 54783014 -89499475 + L2 LINE L2 3094 3313 0 2269 106 0 0 chr12 54784104 54784406 -89498083 + AluSx SINE Alu 1 302 -10 234 301 258 12 chr12 54784427 54784590 -89497899 - MIR SINE MIR -29 233 31 223 329 76 55 chr12 54784906 54785143 -89497346 + L3b LINE CR1 1218 1459 -124 36 0 0 0 chr12 54785793 54785829 -89496660 + AT_rich Low_complexity Low_complexity 1 36 0 325 104 0 0 chr12 54785848 54785896 -89496593 + 7SLRNA srpRNA srpRNA 127 174 -146 2088 118 20 0 chr12 54786382 54786687 -89495802 + AluSx SINE Alu 1 311 -1 1707 150 33 0 chr12 54786712 54786985 -89495504 - AluJo SINE Alu -30 282 1 274 236 28 0 chr12 54786985 54787057 -89495432 - MER5B DNA MER1_type -74 104 31 238 308 96 0 chr12 54788376 54788480 -89494009 + MIR SINE MIR 30 143 -65 1482 155 50 32 chr12 54788841 54789165 -89493324 + AluJo SINE Alu 31 359 0 418 280 19 64 chr12 54789165 54789322 -89493167 + MIR SINE MIR 33 182 -80 528 308 117 22 chr12 54789429 54789460 -89493029 + L2 LINE L2 2818 2845 -468 2167 81 14 3 chr12 54789460 54789757 -89492732 - AluSx SINE Alu -12 300 1 528 308 117 22 chr12 54789757 54790177 -89492312 + L2 LINE L2 2845 3312 -1 777 244 113 5 chr12 54790830 54791051 -89491438 - MIR SINE MIR 0 262 18 289 297 18 27 chr12 54791061 54791172 -89491317 - MIR SINE MIR -82 180 71 2265 125 0 0 chr12 54792316 54792627 -89489862 + AluJb SINE Alu 1 311 -1 2324 92 0 0 chr12 54792688 54792992 -89489497 + AluSc SINE Alu 1 304 -5 2298 107 0 0 chr12 54793018 54793327 -89489162 + AluSg1 SINE Alu 1 309 0 1966 155 7 0 chr12 54793802 54794106 -89488383 + AluJb SINE Alu 1 306 -6 201 303 61 0 chr12 54794638 54794704 -89487785 + MIR SINE MIR 59 128 -80 563 264 86 64 chr12 54794715 54794823 -89487666 + MIR SINE MIR 6 110 -152 2179 125 0 0 chr12 54794823 54795135 -89487354 - AluSx SINE Alu 0 312 1 563 264 86 64 chr12 54795135 54795246 -89487243 + MIR SINE MIR 110 230 -32 189 247 174 53 chr12 54795210 54795400 -89487089 + L2 LINE L2 2765 2977 -337 * 1602 158 7 40 chr12 54795428 54795725 -89486764 - AluJo SINE Alu -18 294 8 1703 150 55 7 chr12 54795725 54796168 -89486321 + MLT2B1 LTR ERVL 5 519 -1 236 299 45 0 chr12 54796202 54796269 -89486220 + L2 LINE L2 3134 3203 -69 23 54 0 0 chr12 54796800 54796837 -89485652 + GC_rich Low_complexity Low_complexity 1 37 0 240 181 0 198 chr12 54798204 54798320 -89484169 + MIR3 SINE MIR 8 100 -108 615 281 30 18 chr12 54798527 54798694 -89483795 - MIR SINE MIR -31 231 63 379 270 152 22 chr12 54800044 54800222 -89482267 - MIR SINE MIR -13 249 49 326 212 11 73 chr12 54800771 54800950 -89481539 + G-rich Low_complexity Low_complexity 1 168 0 2369 72 0 0 chr12 54801705 54801998 -89480491 - AluSg SINE Alu -16 294 2 535 369 76 25 chr12 54802020 54802491 -89479998 + L3 LINE CR1 372 866 -711 994 214 44 18 chr12 54802644 54802873 -89479616 + MIR SINE MIR 28 262 0 296 283 17 81 chr12 54803032 54803205 -89479284 + L3 LINE CR1 1279 1440 -137 257 316 319 6 chr12 54803263 54803624 -89478865 - L2 LINE L2 -9 3304 2831 572 251 66 43 chr12 54804761 54804972 -89477517 - MIR SINE MIR -8 254 39 386 282 26 8 chr12 54806145 54806262 -89476227 - MIR3 SINE MIR -49 159 41 511 172 0 0 chr12 54808961 54809048 -89473441 - MER8 DNA MER2_type -131 108 22 226 277 31 0 chr12 54809223 54809288 -89473201 - MIR SINE MIR -114 148 82 1563 77 0 24 chr12 54810338 54810547 -89471942 + AluY SINE Alu 1 204 -107 2315 76 23 0 chr12 54811509 54811811 -89470678 + AluY SINE Alu 1 309 -2 2328 62 3 3 chr12 54811949 54812240 -89470249 + AluY SINE Alu 1 291 -20 301 320 68 20 chr12 54812293 54812440 -89470049 + MIR3 SINE MIR 3 156 -52 1013 175 143 42 chr12 54812757 54812974 -89469515 + MER8 DNA MER2_type 1 239 0 855 217 24 0 chr12 54813149 54813315 -89469174 + AluJb SINE Alu 137 306 -6 498 227 49 55 chr12 54814021 54814184 -89468305 + MIR3 SINE MIR 38 199 -9 369 0 0 0 chr12 54815904 54815945 -89466544 + (TG)n Simple_repeat Simple_repeat 1 41 0 249 83 0 0 chr12 54815945 54815981 -89466508 + (GA)n Simple_repeat Simple_repeat 2 37 0 272 229 0 0 chr12 54818222 54818292 -89464197 + CT-rich Low_complexity Low_complexity 1 70 0 332 356 96 14 chr12 54820520 54820666 -89461823 - MER91A DNA MER1_type -33 163 6 467 223 61 7 chr12 54821494 54821642 -89460847 - L1ME3A LINE L1 -41 6129 5974 25 0 0 0 chr12 54821643 54821668 -89460821 + AT_rich Low_complexity Low_complexity 1 25 0 819 129 0 9 chr12 54821668 54821784 -89460705 - FLAM_C SINE Alu -28 115 1 318 205 12 60 chr12 54821792 54821875 -89460614 - L1ME3A LINE L1 -200 5970 5892 379 291 102 25 chr12 54822030 54822226 -89460263 + MIR SINE MIR 2 212 -50 25 31 0 0 chr12 54823117 54823149 -89459340 + AT_rich Low_complexity Low_complexity 1 32 0 369 227 17 84 chr12 54823283 54823402 -89459087 + MIR SINE MIR 117 227 -35 228 348 118 0 chr12 54823527 54823662 -89458827 + MIR SINE MIR 110 260 -2 482 216 45 15 chr12 54823851 54823985 -89458504 - MER5A DNA MER1_type -48 141 4 269 286 22 11 chr12 54824542 54824633 -89457856 + MIR3 SINE MIR 67 158 -50 1024 269 32 0 chr12 54824961 54825214 -89457275 + MIR SINE MIR 2 262 0 303 296 0 0 chr12 54825213 54825294 -89457195 - MIR SINE MIR -67 141 61 * 207 156 0 0 chr12 54825416 54825448 -89457041 + (CCCCG)n Simple_repeat Simple_repeat 2 33 0 180 152 0 0 chr12 54827534 54827567 -89454922 + A-rich Low_complexity Low_complexity 1 33 0 2154 117 3 0 chr12 54828530 54828839 -89453650 - AluSx SINE Alu -2 310 1 226 328 61 57 chr12 54828845 54829092 -89453397 + L2 LINE L2 3025 3272 0 1098 225 117 72 chr12 54829431 54829537 -89452952 - MLT2B1 LTR ERVL 0 520 420 198 0 0 0 chr12 54829537 54829559 -89452930 + (ATTG)n Simple_repeat Simple_repeat 4 25 0 2189 89 4 0 chr12 54829559 54829839 -89452650 - AluSp SINE Alu -32 281 1 1098 225 117 72 chr12 54829839 54830229 -89452260 - MLT2B1 LTR ERVL -99 421 1 234 0 0 0 chr12 54830407 54830433 -89452056 + (ATG)n Simple_repeat Simple_repeat 1 26 0 623 200 114 114 chr12 54830871 54831081 -89451408 - MER63A DNA MER1_type 0 210 1 189 297 85 68 chr12 54831145 54831246 -89451243 + MIR SINE MIR 19 124 -84 2160 92 3 32 chr12 54831246 54831560 -89450929 - AluSx SINE Alu -7 305 1 189 297 85 68 chr12 54831560 54831576 -89450913 + MIR SINE MIR 124 138 -70 1987 132 3 23 chr12 54831714 54832018 -89450471 - AluSq SINE Alu -15 298 1 1589 187 3 10 chr12 54832018 54832311 -89450178 - AluJo SINE Alu -10 302 11 2494 29 3 19 chr12 54832369 54832685 -89449804 + AluY SINE Alu 1 311 0 21 0 0 0 chr12 54833841 54833862 -89448627 + GC_rich Low_complexity Low_complexity 1 21 0 525 280 57 75 chr12 54835030 54835224 -89447265 + L3 LINE CR1 1188 1377 -200 1578 178 41 4 chr12 54835224 54835494 -89446995 + AluSx SINE Alu 25 304 -8 525 280 57 75 chr12 54835494 54835581 -89446908 + L3 LINE CR1 1377 1464 -113 638 272 95 21 chr12 54835746 54835989 -89446500 - MIR SINE MIR -1 261 1 383 224 92 0 chr12 54836015 54836113 -89446376 - MIR SINE MIR -109 153 47 1888 164 23 3 chr12 54836427 54836732 -89445757 - AluJb SINE Alu -1 311 1 928 152 161 88 chr12 54838156 54838320 -89444169 - AluJo SINE Alu -4 308 123 1907 177 0 0 chr12 54838320 54838614 -89443875 + AluJo SINE Alu 2 295 -17 928 152 161 88 chr12 54838614 54838666 -89443823 - AluJo SINE Alu -189 123 76 200 229 21 0 chr12 54838747 54838795 -89443694 - L2 LINE L2 -5 3267 3219 492 234 239 34 chr12 54838954 54839163 -89443326 + MIR SINE MIR 8 259 -3 1676 161 34 37 chr12 54839522 54839820 -89442669 + AluJo SINE Alu 3 299 -13 354 335 145 6 chr12 54839958 54840137 -89442352 + MIR SINE MIR 16 219 -43 1249 79 58 0 chr12 54841483 54841672 -89440817 - L1PA13 LINE L1 -82 6081 5882 207 263 248 23 chr12 54845384 54845517 -89436972 - MIR3 SINE MIR -25 183 21 476 104 0 13 chr12 54847535 54847612 -89434877 + (GGAGA)n Simple_repeat Simple_repeat 2 77 0 299 236 121 149 chr12 54847658 54847736 -89434753 - L2 LINE L2 -9 3263 3184 1981 99 76 53 chr12 54847736 54848039 -89434450 + AluSg SINE Alu 1 310 0 299 236 121 149 chr12 54848039 54848282 -89434207 - L2 LINE L2 -88 3184 2951 277 314 197 10 chr12 54848414 54848704 -89433785 - L2 LINE L2 -567 2747 2404 591 269 30 20 chr12 54848712 54848913 -89433576 - MLT1K LTR MaLR -2 586 384 772 288 28 12 chr12 54848916 54849166 -89433323 + MIR SINE MIR 2 255 -7 195 259 17 35 chr12 54849578 54849636 -89432853 - L2 LINE L2 -1007 2307 2251 324 294 101 32 chr12 54850863 54851111 -89431378 + L2 LINE L2 1610 1874 -1440 670 291 113 32 chr12 54851689 54852095 -89430394 - L2 LINE L2 -3 3310 2872 630 326 75 48 chr12 54852641 54852810 -89429679 - L2 LINE L2 -2 3311 3148 1812 161 41 88 chr12 54852810 54852955 -89429534 - MLT1C LTR MaLR 0 467 317 1600 161 36 29 chr12 54852955 54853229 -89429260 + AluJb SINE Alu 1 276 -36 1812 161 41 88 chr12 54853229 54853240 -89429249 - MLT1C LTR MaLR -150 317 307 351 0 0 0 chr12 54853240 54853279 -89429210 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1812 161 41 88 chr12 54853279 54853607 -89428882 - MLT1C LTR MaLR -160 307 5 630 326 75 48 chr12 54853607 54853699 -89428790 - L2 LINE L2 -165 3148 3060 2044 118 0 40 chr12 54853699 54854025 -89428464 - AluSx SINE Alu 0 314 1 630 326 75 48 chr12 54854025 54854243 -89428246 - L2 LINE L2 -253 3060 2817 301 326 0 0 chr12 54854264 54854356 -89428133 + HAL1 LINE L1 1657 1748 -759 1083 163 6 6 chr12 54854642 54854820 -89427669 - FRAM SINE Alu 0 176 1 280 252 56 0 chr12 54856100 54856207 -89426282 + MER103 DNA DNA 8 120 -46 238 224 19 58 chr12 54856470 54856626 -89425863 + (TTA)n Simple_repeat Simple_repeat 1 150 0 1933 218 109 14 chr12 54856646 54857353 -89425136 - SATR1 Satellite Satellite -52 774 1 2059 185 113 16 chr12 54857383 54858393 -89424096 - SATR1 Satellite Satellite 0 1107 1 2270 164 101 12 chr12 54858421 54860283 -89422206 - SATR1 Satellite Satellite -3 2028 1 2309 96 0 50 chr12 54860283 54860605 -89421884 - AluSp SINE Alu -7 306 1 243 226 10 71 chr12 54860789 54860972 -89421517 + L1MA7 LINE L1 5767 5960 -331 1890 147 0 7 chr12 54860972 54861257 -89421232 + AluSx SINE Alu 1 283 -29 243 226 10 71 chr12 54861257 54861494 -89420995 + L1MA7 LINE L1 5960 6153 -138 2353 95 3 3 chr12 54861539 54861845 -89420644 - AluSp SINE Alu -7 306 1 3167 221 27 43 chr12 54861890 54862877 -89419612 + L1MB3 LINE L1 4818 5820 -363 2153 129 3 3 chr12 54862877 54863188 -89419301 + AluSx SINE Alu 1 311 -1 3167 221 27 43 chr12 54863188 54863309 -89419180 + L1MB3 LINE L1 5820 5942 -241 1980 134 25 0 chr12 54863309 54863584 -89418905 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr12 54863587 54863611 -89418878 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3167 221 27 43 chr12 54863611 54863856 -89418633 + L1MB3 LINE L1 5944 6153 -30 35 0 0 0 chr12 54863873 54863908 -89418581 + AT_rich Low_complexity Low_complexity 1 35 0 273 275 0 25 chr12 54864281 54864361 -89418128 + CT-rich Low_complexity Low_complexity 3 80 0 2240 103 3 10 chr12 54864672 54864983 -89417506 + AluSg SINE Alu 1 309 -1 262 283 44 26 chr12 54865367 54865480 -89417009 + L2 LINE L2 3158 3272 0 2215 105 7 3 chr12 54865538 54865842 -89416647 - AluSq SINE Alu -8 305 1 1086 207 188 25 chr12 54867533 54867943 -89414546 - SATR1 Satellite Satellite -1 476 1 578 236 157 51 chr12 54867990 54868206 -89414283 - SATR1 Satellite Satellite -4 466 228 1099 190 317 3 chr12 54868221 54868568 -89413921 - SATR1 Satellite Satellite -2 468 13 1210 202 307 9 chr12 54868607 54869692 -89412797 - SATR1 Satellite Satellite -1 1408 1 903 221 248 50 chr12 54869734 54871397 -89411092 - SATR1 Satellite Satellite -3 1992 1 661 192 299 21 chr12 54871486 54871777 -89410712 - SATR1 Satellite Satellite -92 378 7 1060 199 239 40 chr12 54871939 54872946 -89409543 - SATR1 Satellite Satellite -1 1207 1 1056 203 205 41 chr12 54872968 54873601 -89408888 - SATR1 Satellite Satellite -2 736 1 2319 180 113 7 chr12 54873638 54875173 -89407316 + SATR1 Satellite Satellite 1 1697 -20 4625 76 5 3 chr12 54875173 54875795 -89406694 - HERVE LTR ERV1 -2648 5165 4543 2062 112 10 38 chr12 54875950 54876264 -89406225 - AluSx SINE Alu -7 305 1 408 151 0 70 chr12 54876607 54876693 -89405796 - MLT1H LTR MaLR -378 171 92 1404 142 9 21 chr12 54876709 54876942 -89405547 - AluJo SINE Alu -14 298 69 1850 134 33 10 chr12 54877076 54877375 -89405114 + AluSx SINE Alu 1 306 -6 485 188 45 0 chr12 54877465 54877577 -89404912 - L2 LINE L2 -938 2376 2260 2181 101 24 3 chr12 54877712 54877999 -89404490 - AluSx SINE Alu -19 293 1 2464 97 0 0 chr12 54878017 54878327 -89404162 - AluY SINE Alu -1 310 1 1146 52 0 22 chr12 54878329 54878464 -89404025 - AluY SINE Alu -179 132 1 266 300 9 36 chr12 54878771 54878881 -89403608 + MIR3 SINE MIR 87 193 -15 1098 217 66 53 chr12 54878936 54879365 -89403124 - MLT1C LTR MaLR -1 466 29 2179 134 0 0 chr12 54879365 54879670 -89402819 - AluSx SINE Alu -7 305 1 1098 217 66 53 chr12 54879670 54879696 -89402793 - MLT1C LTR MaLR -438 29 5 379 341 37 91 chr12 54880444 54880852 -89401637 + L2 LINE L2 2886 3271 -1 1786 152 10 23 chr12 54881343 54881646 -89400843 - AluSx SINE Alu -13 299 1 327 306 0 16 chr12 54882137 54882258 -89400231 + MIR SINE MIR 130 248 -14 2335 119 0 0 chr12 54882266 54882576 -89399913 - AluSx SINE Alu -2 310 1 355 233 78 26 chr12 54882827 54882943 -89399546 + L3 LINE CR1 1387 1508 -69 354 310 76 20 chr12 54883646 54883843 -89398646 + L2 LINE L2 2947 3154 -159 414 220 77 0 chr12 54883847 54883938 -89398551 - MER45A DNA AcHobo -1 177 80 181 271 35 71 chr12 54883989 54884074 -89398415 + L2 LINE L2 3165 3246 -67 263 185 12 86 chr12 54884412 54884493 -89397996 + MIR SINE MIR 77 151 -111 259 208 52 52 chr12 54885130 54885153 -89397336 + L2 LINE L2 3232 3254 -59 261 122 0 0 chr12 54885153 54885194 -89397295 + MIR SINE MIR 210 250 -12 259 208 52 52 chr12 54885194 54885207 -89397282 + L2 LINE L2 3253 3308 -5 200 355 36 29 chr12 54885441 54885579 -89396910 + L2 LINE L2 2265 2403 -911 419 0 20 0 chr12 54886113 54886164 -89396325 + (TG)n Simple_repeat Simple_repeat 1 52 0 206 321 0 0 chr12 54887008 54887061 -89395428 + L3b LINE CR1 1335 1387 -196 252 333 7 15 chr12 54888389 54888524 -89393965 + (TTGGGG)n Simple_repeat Simple_repeat 3 136 0 12041 71 2 18 chr12 54890405 54892116 -89390373 - HERVE LTR ERV1 -3331 4482 2798 332 394 75 3 chr12 54892295 54892577 -89389912 + L2 LINE L2 2224 2525 -789 627 64 85 0 chr12 54892582 54892676 -89389813 + PABL_A LTR ERV1 1 102 -558 329 134 0 143 chr12 54892773 54892805 -89389684 - MER3 DNA MER1_type -33 129 169 2173 101 3 3 chr12 54892805 54893101 -89389388 + AluSx SINE Alu 1 296 -16 329 134 0 143 chr12 54893101 54893180 -89389309 - MER3 DNA MER1_type 8 170 81 1736 44 40 128 chr12 54894037 54894335 -89388154 + AluY SINE Alu 1 272 -39 4139 103 2 4 chr12 54894459 54895014 -89387475 - MER41A LTR ERV1 0 554 1 234 0 0 0 chr12 54897024 54897050 -89385439 + (T)n Simple_repeat Simple_repeat 1 26 0 1100 229 110 58 chr12 54897748 54897878 -89384611 + MLT1G LTR MaLR 11 133 -457 2344 97 0 0 chr12 54897878 54898186 -89384303 - AluY SINE Alu -3 308 1 2072 129 0 0 chr12 54898187 54898481 -89384008 - AluSx SINE Alu -14 298 5 1100 229 110 58 chr12 54898481 54898884 -89383605 + MLT1G LTR MaLR 132 574 -16 329 360 14 14 chr12 54899465 54899604 -89382885 + MIR SINE MIR 22 160 -102 494 252 30 7 chr12 54899779 54899914 -89382575 - MLT1J LTR MaLR -41 470 333 581 253 114 36 chr12 54901115 54901326 -89381163 + MIR SINE MIR 35 261 -1 792 137 56 43 chr12 54901949 54902110 -89380379 + L1MA10 LINE L1 6170 6332 -2 1329 245 57 63 chr12 54902111 54902273 -89380216 + L1ME3A LINE L1 5275 5436 -734 1922 109 47 0 chr12 54902273 54902586 -89379903 + AluSx SINE Alu 1 326 0 1329 245 57 63 chr12 54902586 54902908 -89379581 + L1ME3A LINE L1 5436 5758 -412 2399 91 0 0 chr12 54902908 54903217 -89379272 + AluY SINE Alu 1 309 -2 2213 101 3 0 chr12 54903221 54903517 -89378972 + AluSp SINE Alu 1 297 -16 1329 245 57 63 chr12 54903517 54903584 -89378905 + L1ME3A LINE L1 5761 5830 -340 272 176 15 29 chr12 54903588 54903656 -89378833 + MIR SINE MIR 195 261 -1 444 260 35 83 chr12 54903755 54903864 -89378625 + L1ME3A LINE L1 5873 5986 -184 2281 112 0 0 chr12 54903864 54904176 -89378313 + AluSx SINE Alu 1 312 0 444 260 35 83 chr12 54904176 54904378 -89378111 + L1ME3A LINE L1 5986 6169 -1 192 77 0 0 chr12 54904388 54904414 -89378075 + (CA)n Simple_repeat Simple_repeat 1 26 0 1981 121 24 7 chr12 54904821 54905118 -89377371 - AluSx SINE Alu -6 306 5 1829 151 3 6 chr12 54905141 54905452 -89377037 - AluY SINE Alu -1 310 1 1087 52 0 22 chr12 54905454 54905589 -89376900 - AluY SINE Alu -179 132 1 293 300 9 36 chr12 54905896 54906006 -89376483 + MIR3 SINE MIR 87 193 -15 1312 220 65 52 chr12 54906061 54906490 -89375999 - MLT1C LTR MaLR -1 466 29 2087 134 0 0 chr12 54906490 54906795 -89375694 - AluSx SINE Alu -7 305 1 1312 220 65 52 chr12 54906795 54906825 -89375664 - MLT1C LTR MaLR -438 29 1 442 345 59 73 chr12 54907431 54907977 -89374512 + L2 LINE L2 2723 3271 -1 1701 157 10 23 chr12 54908466 54908771 -89373718 - AluSx SINE Alu -11 301 1 316 314 0 16 chr12 54909262 54909383 -89373106 + MIR SINE MIR 130 248 -14 2549 55 0 3 chr12 54909391 54909702 -89372787 - AluY SINE Alu -1 310 1 1742 148 24 3 chr12 54909707 54909998 -89372491 - AluJo SINE Alu -15 297 1 267 305 38 0 chr12 54909998 54910103 -89372386 + HERVL LTR ERVL 2671 2766 -2888 455 256 51 51 chr12 54910554 54910691 -89371798 + MIR3 SINE MIR 36 172 -36 1809 126 7 18 chr12 54911088 54911373 -89371116 - AluJb SINE Alu -16 296 15 2192 122 0 3 chr12 54911395 54911698 -89370791 - AluSx SINE Alu -10 302 1 369 62 0 0 chr12 54912377 54912425 -89370064 + (TG)n Simple_repeat Simple_repeat 1 48 0 601 301 45 41 chr12 54912514 54912760 -89369729 - MIR SINE MIR -6 256 10 626 150 9 26 chr12 54913443 54913556 -89368933 - FLAM_A SINE Alu 0 142 32 405 244 0 59 chr12 54914177 54914296 -89368193 - L2 LINE L2 -17 3255 3144 1083 254 71 46 chr12 54914504 54914720 -89367769 + L2 LINE L2 2755 2964 -349 2165 121 0 6 chr12 54914720 54915033 -89367456 - AluSx SINE Alu -1 311 1 1083 254 71 46 chr12 54915033 54915319 -89367170 + L2 LINE L2 2964 3310 -3 1830 179 55 26 chr12 54915473 54915688 -89366801 - MSTD LTR MaLR -4 392 160 2385 55 3 3 chr12 54915688 54915979 -89366510 - AluY SINE Alu -20 291 1 1830 179 55 26 chr12 54915979 54916144 -89366345 - MSTD LTR MaLR -236 160 1 6813 219 81 42 chr12 54916144 54916489 -89366000 - MSTD-int LTR MaLR 0 1735 1405 2167 128 0 0 chr12 54916489 54916786 -89365703 - AluSx SINE Alu -15 297 1 6813 219 81 42 chr12 54916786 54917486 -89365003 - MSTD-int LTR MaLR -330 1405 733 2104 120 0 13 chr12 54917486 54917795 -89364694 - AluY SINE Alu -6 305 1 6813 219 81 42 chr12 54917795 54918419 -89364070 - MSTD-int LTR MaLR -1002 733 1 1475 137 238 34 chr12 54918420 54918600 -89363889 - MSTD LTR MaLR 0 396 254 2089 120 0 3 chr12 54918600 54918612 -89363877 - AluSc SINE Alu -18 291 280 252 0 0 0 chr12 54918612 54918640 -89363849 + (TG)n Simple_repeat Simple_repeat 1 28 0 2089 120 0 3 chr12 54918640 54918919 -89363570 - AluSc SINE Alu -29 280 1 1475 137 238 34 chr12 54918919 54919066 -89363423 - MSTD LTR MaLR -142 254 2 1797 168 0 3 chr12 54919200 54919504 -89362985 + AluSx SINE Alu 2 304 -8 329 343 56 6 chr12 54919795 54919973 -89362516 + LTR33A LTR ERVL 337 523 0 292 347 27 18 chr12 54919973 54920060 -89362429 - L2 LINE L2 -119 3194 3109 2510 61 0 3 chr12 54920060 54920372 -89362117 + AluY SINE Alu 1 311 0 292 347 27 18 chr12 54920372 54920509 -89361980 - L2 LINE L2 -204 3109 2968 336 179 0 132 chr12 54921113 54921151 -89361338 - MIR SINE MIR -15 247 206 2180 101 3 3 chr12 54921151 54921447 -89361042 - AluSx SINE Alu -10 302 7 336 179 0 132 chr12 54921447 54921514 -89360975 - MIR SINE MIR -56 206 156 421 225 116 35 chr12 54921655 54921806 -89360683 - MIR3 SINE MIR -5 203 45 265 307 0 50 chr12 54921860 54921961 -89360528 + L2 LINE L2 3208 3303 -10 277 333 68 8 chr12 54922015 54922132 -89360357 - L2 LINE L2 -5 3267 3144 211 290 0 58 chr12 54923313 54923382 -89359107 + L2 LINE L2 3247 3311 -2 628 311 146 9 chr12 54923396 54923637 -89358852 + L1M4 LINE L1 2870 3167 -2979 1845 139 16 16 chr12 54923637 54923947 -89358542 - AluJo SINE Alu -2 310 1 628 311 146 9 chr12 54923947 54924027 -89358462 + L1M4 LINE L1 3167 3235 -2911 294 281 117 23 chr12 54924383 54924511 -89357978 - MIR SINE MIR -70 192 53 2188 137 54 24 chr12 54925095 54925131 -89357358 - MSTB LTR MaLR -5 421 388 2169 102 0 3 chr12 54925131 54925413 -89357076 + AluSx SINE Alu 1 283 -29 306 87 0 0 chr12 54925413 54925459 -89357030 + (CA)n Simple_repeat Simple_repeat 1 46 0 2169 102 0 3 chr12 54925459 54925470 -89357019 + AluSx SINE Alu 283 293 -19 2188 137 54 24 chr12 54925470 54925842 -89356647 - MSTB LTR MaLR -38 388 1 253 254 0 0 chr12 54926454 54926509 -89355980 + G-rich Low_complexity Low_complexity 3 57 0 323 273 197 27 chr12 54928395 54928578 -89353911 - MIR SINE MIR -3 259 46 442 230 50 0 chr12 54929343 54929443 -89353046 - MIR SINE MIR -80 182 78 194 259 152 51 chr12 54930625 54930783 -89351706 + L2 LINE L2 3083 3256 -16 532 316 52 9 chr12 54931559 54931885 -89350604 - L1MC5 LINE L1 -320 7641 7302 2294 103 3 0 chr12 54932957 54933269 -89349220 - AluSq SINE Alu 0 313 1 323 265 0 0 chr12 54933277 54933360 -89349129 + MIR SINE MIR 73 155 -107 959 245 61 12 chr12 54933367 54933612 -89348877 - MIR SINE MIR -3 259 3 450 243 9 9 chr12 54933612 54933706 -89348783 + MIR SINE MIR 164 257 -5 342 67 0 0 chr12 54934124 54934169 -89348320 + (TG)n Simple_repeat Simple_repeat 2 46 0 601 157 68 0 chr12 54934373 54934520 -89347969 + Charlie5 DNA MER1_type 2429 2585 -27 221 319 167 19 chr12 54934662 54934932 -89347557 + L2 LINE L2 2633 2942 -372 554 304 32 59 chr12 54935195 54935415 -89347074 - MIR SINE MIR -21 241 28 226 306 0 0 chr12 54937526 54937588 -89344901 - MER91A DNA MER1_type 0 196 135 340 311 38 0 chr12 54938754 54938860 -89343629 - MIR SINE MIR -45 217 108 296 289 105 3 chr12 54938875 54938980 -89343509 + MIR SINE MIR 7 123 -103 514 283 82 6 chr12 54939426 54939585 -89342904 - MER91A DNA MER1_type -25 171 1 370 276 29 0 chr12 54939589 54939694 -89342795 + MIR3 SINE MIR 77 184 -24 306 250 202 0 chr12 54940289 54940393 -89342096 + MIR3 SINE MIR 81 205 -3 394 319 31 31 chr12 54941058 54941230 -89341259 - MIR SINE MIR -36 172 2 186 43 0 0 chr12 54941238 54941261 -89341228 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 338 279 39 19 chr12 54941654 54941758 -89340731 + L2 LINE L2 3205 3310 -3 1989 108 9 58 chr12 54943719 54944044 -89338445 - AluSc SINE Alu 0 309 1 1871 133 0 4 chr12 54944049 54944320 -89338169 - AluSx SINE Alu -23 289 20 320 344 56 0 chr12 54944445 54944605 -89337884 - L2 LINE L2 -166 3106 2938 343 167 0 0 chr12 54944976 54945036 -89337453 - MER3 DNA MER1_type -149 60 1 489 281 65 6 chr12 54945118 54945287 -89337202 + MIR3 SINE MIR 2 183 -25 458 238 74 69 chr12 54945463 54945665 -89336824 + L2 LINE L2 3110 3312 -1 180 0 0 0 chr12 54947193 54947213 -89335276 + (TCC)n Simple_repeat Simple_repeat 1 20 0 362 309 15 37 chr12 54947619 54947680 -89334809 - MIR SINE MIR -114 148 87 1764 173 141 71 chr12 54947680 54948054 -89334435 + MLT1D LTR MaLR 5 420 -85 2059 138 0 0 chr12 54948054 54948352 -89334137 - AluSx SINE Alu -14 298 1 1764 173 141 71 chr12 54948352 54948444 -89334045 + MLT1D LTR MaLR 420 504 -1 362 309 15 37 chr12 54948444 54948518 -89333971 - MIR SINE MIR -175 87 16 327 300 118 0 chr12 54948979 54949089 -89333400 - MIR SINE MIR -69 193 71 303 304 71 18 chr12 54950028 54950140 -89332349 + MIR SINE MIR 33 150 -58 295 391 105 4 chr12 54951128 54951366 -89331123 - L3b LINE CR1 -24 1559 1298 315 158 18 0 chr12 54951646 54951703 -89330786 + L2 LINE L2 3241 3298 -15 * 435 261 121 64 chr12 54951656 54951905 -89330584 - L3 LINE CR1 -73 1504 1242 226 223 165 10 chr12 54952401 54952504 -89329985 - MIR3 SINE MIR -35 173 55 183 222 0 0 chr12 54952709 54952754 -89329735 + (TG)n Simple_repeat Simple_repeat 1 45 0 255 103 0 0 chr12 54953446 54953485 -89329004 + (TCCCG)n Simple_repeat Simple_repeat 3 41 0 215 219 162 19 chr12 54953770 54953875 -89328614 + MIR SINE MIR 31 150 -58 545 171 23 78 chr12 54953879 54954008 -89328481 + FLAM_A SINE Alu 21 142 0 347 263 72 10 chr12 54954461 54954585 -89327904 - MIR SINE MIR -92 116 21 324 222 61 0 chr12 54954921 54955020 -89327469 - AluSq/x SINE Alu -179 123 19 237 372 16 16 chr12 54955495 54955616 -89326873 + MIR SINE MIR 8 128 -134 189 229 129 29 chr12 54955698 54955768 -89326721 - MIR SINE MIR -92 116 40 311 307 17 31 chr12 54957000 54957141 -89325348 - L1MC/D LINE L1 -326 5795 5713 205 313 31 0 chr12 54957978 54958042 -89324447 - MIR SINE MIR -64 144 79 390 317 175 0 chr12 54959849 54960031 -89322458 + MIR SINE MIR 32 250 -12 362 229 57 86 chr12 54961677 54961817 -89320672 - MIR SINE MIR -68 194 59 252 191 0 0 chr12 54962500 54962547 -89319942 + 5S rRNA rRNA 33 79 -42 211 264 57 0 chr12 54962580 54962633 -89319856 + MIR SINE MIR 109 164 -98 850 223 121 0 chr12 54962946 54963152 -89319337 - MIR SINE MIR -22 240 10 209 286 0 38 chr12 54963997 54964102 -89318387 + C-rich Low_complexity Low_complexity 6 106 0 197 343 0 0 chr12 54964741 54964808 -89317681 + L2 LINE L2 3246 3312 -1 458 208 58 0 chr12 54966737 54966857 -89315632 - MIR SINE MIR -12 250 124 655 289 48 13 chr12 54967011 54967239 -89315250 - MIR SINE MIR -6 256 21 488 295 167 0 chr12 54967888 54968098 -89314391 + MIR SINE MIR 13 257 -5 281 239 20 35 chr12 54968372 54968488 -89314001 + MIR SINE MIR 18 129 -79 246 135 0 0 chr12 54969588 54969625 -89312864 + MIR SINE MIR 114 150 -58 383 336 0 7 chr12 54970521 54970658 -89311831 + MIR3 SINE MIR 70 205 -3 33 56 0 0 chr12 54972075 54972129 -89310360 + GC_rich Low_complexity Low_complexity 1 54 0 217 330 0 0 chr12 54973296 54973399 -89309090 + (TG)n Simple_repeat Simple_repeat 1 103 0 252 299 64 118 chr12 54974323 54974510 -89307979 + MIR SINE MIR 76 252 -10 251 304 69 0 chr12 54974511 54974613 -89307876 + MIR SINE MIR 104 212 -50 241 176 44 0 chr12 54974886 54974954 -89307535 - MER112 DNA MER1_type -173 87 17 281 315 190 22 chr12 54975585 54975769 -89306720 - MIR SINE MIR -12 250 36 201 74 0 0 chr12 54977017 54977044 -89305445 + (TG)n Simple_repeat Simple_repeat 2 28 0 324 287 11 0 chr12 54978522 54978609 -89303880 - MIR SINE MIR -15 247 160 430 225 104 40 chr12 54979702 54979875 -89302614 - MIR3 SINE MIR -4 204 21 415 194 20 10 chr12 54980144 54980242 -89302247 + MIR SINE MIR 47 145 -117 728 343 30 0 chr12 54980502 54980738 -89301751 + MIR SINE MIR 20 262 0 303 348 65 47 chr12 54981346 54981806 -89300683 - L2 LINE L2 -20 3252 2712 224 281 0 16 chr12 54982130 54982194 -89300295 + MIR SINE MIR 87 149 -59 192 256 0 115 chr12 54982638 54982716 -89299773 + L3b LINE CR1 1293 1361 -222 311 279 6 50 chr12 54983306 54983467 -89299022 + CT-rich Low_complexity Low_complexity 1 154 0 768 162 0 0 chr12 54984996 54985113 -89297376 + AluJo/FLAM SINE Alu 1 117 -195 2172 99 0 7 chr12 54985116 54985410 -89297079 - AluSx SINE Alu -20 292 1 209 125 0 0 chr12 54985638 54985670 -89296819 + L2 LINE L2 3223 3254 -18 201 39 0 0 chr12 54986692 54986718 -89295771 + (CA)n Simple_repeat Simple_repeat 2 27 0 317 276 32 41 chr12 54986729 54986852 -89295637 - L2 LINE L2 -12 3260 3139 371 299 9 37 chr12 54987133 54987240 -89295249 + L1MC4 LINE L1 6600 6703 -1339 4474 193 60 26 chr12 54987674 54988584 -89293905 - L1MC4 LINE L1 -7 8035 7006 1675 184 0 14 chr12 54988584 54988877 -89293612 - AluJo SINE Alu -1 311 23 4474 193 60 26 chr12 54988877 54989156 -89293333 - L1MC4 LINE L1 -1036 7006 6738 493 255 11 32 chr12 54989350 54989413 -89293076 - L1MC4 LINE L1 -1370 6672 6609 744 55 27 0 chr12 54989413 54989523 -89292966 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 493 255 11 32 chr12 54989523 54989647 -89292842 - L1MC4 LINE L1 -1433 6609 6489 1851 167 3 7 chr12 54989906 54990200 -89292289 - AluJb SINE Alu -19 293 1 2506 250 82 20 chr12 54990267 54991012 -89291477 - MER21B LTR ERV1 -54 809 19 367 258 11 0 chr12 54991034 54991123 -89291366 - MER21B LTR ERV1 -773 90 1 384 316 114 34 chr12 54991298 54991535 -89290954 - MIR SINE MIR -1 261 6 252 301 0 0 chr12 54991880 54991953 -89290536 - L2 LINE L2 -5 3267 3195 1136 210 174 58 chr12 54992151 54992735 -89289754 + LTR50 LTR ERVL 1 728 -67 1811 175 3 0 chr12 54992735 54993021 -89289468 - AluJb SINE Alu -20 292 6 1136 210 174 58 chr12 54993021 54993096 -89289393 + LTR50 LTR ERVL 728 793 -2 2803 263 80 73 chr12 54993252 54994868 -89287621 + HAL1 LINE L1 339 1965 -542 707 253 60 57 chr12 54994973 54995280 -89287209 + HAL1 LINE L1 2171 2481 -26 1676 199 10 17 chr12 54995280 54995571 -89286918 - AluJo SINE Alu -23 289 1 707 253 60 57 chr12 54995571 54995595 -89286894 + HAL1 LINE L1 2481 2503 -4 2300 112 0 6 chr12 54996143 54996455 -89286034 - AluSq SINE Alu -3 310 1 824 292 69 59 chr12 54996639 54997234 -89285255 + HAL1 LINE L1 1113 1713 -794 836 216 0 33 chr12 54997692 54997873 -89284616 - AluJb SINE Alu -2 310 136 222 179 0 0 chr12 54997873 54997929 -89284560 + CT-rich Low_complexity Low_complexity 3 58 0 * 394 154 22 11 chr12 54997921 54998012 -89284477 + C-rich Low_complexity Low_complexity 1 92 0 234 0 0 0 chr12 54998140 54998166 -89284323 + (A)n Simple_repeat Simple_repeat 1 26 0 1625 236 91 98 chr12 54998166 54999081 -89283408 - L1M3e LINE L1 -4971 2059 1 2426 81 7 7 chr12 54999525 54999820 -89282669 + AluSp SINE Alu 1 295 -18 635 211 38 70 chr12 55001175 55001360 -89281129 - MER97b DNA MER1_type? -874 179 1 296 282 18 27 chr12 55001360 55001467 -89281022 - MLT1J2 LTR MaLR -51 399 294 248 292 88 29 chr12 55002037 55002174 -89280315 - L2 LINE L2 0 3313 3169 208 210 0 48 chr12 55002513 55002575 -89279914 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 343 330 105 43 chr12 55002596 55002948 -89279541 - L2 LINE L2 -636 2678 2305 203 340 43 0 chr12 55002960 55003054 -89279435 - MIR SINE MIR -7 255 158 990 270 49 64 chr12 55003054 55003461 -89279028 - MLT1I LTR MaLR -1 408 8 2205 107 50 19 chr12 55003814 55004178 -89278311 - THE1C LTR MaLR 0 375 1 284 286 9 48 chr12 55004332 55004437 -89278052 + MIR SINE MIR 162 262 0 637 314 94 40 chr12 55007234 55007673 -89274816 - L1M2 LINE L1 -526 5642 5228 288 0 0 0 chr12 55007673 55007705 -89274784 + (CA)n Simple_repeat Simple_repeat 2 33 0 637 314 94 40 chr12 55007705 55008532 -89273957 - L1M2 LINE L1 -940 5228 4339 1875 112 39 8 chr12 55008532 55008792 -89273697 - AluSq SINE Alu -45 268 1 637 314 94 40 chr12 55008792 55009080 -89273409 - L1M2 LINE L1 -1829 4339 4068 203 372 53 35 chr12 55009184 55009410 -89273079 + L2 LINE L2 2955 3184 -88 254 309 81 12 chr12 55009609 55009781 -89272708 - MIR SINE MIR -46 216 33 360 269 65 0 chr12 55009886 55009994 -89272495 + L1ME LINE L1 5614 5728 -393 259 358 92 0 chr12 55010687 55010807 -89271682 - MIR SINE MIR -109 153 23 314 253 0 48 chr12 55012122 55012205 -89270284 + L2 LINE L2 3235 3313 0 2538 243 29 58 chr12 55013202 55013222 -89269267 + L1M2a LINE L1 923 942 -5442 2387 92 0 43 chr12 55013222 55013548 -89268941 - AluSx SINE Alu 0 312 1 2538 243 29 58 chr12 55013548 55014716 -89267773 + L1M2a LINE L1 942 2160 -4224 1370 188 3 25 chr12 55014717 55015031 -89267458 + L1MA10 LINE L1 6025 6331 -3 280 305 67 0 chr12 55015212 55015317 -89267172 - MIR3 SINE MIR -32 176 65 1077 282 68 38 chr12 55015408 55016247 -89266242 + L2 LINE L2 2443 3312 -1 250 304 0 0 chr12 55016622 55016678 -89265811 + (TG)n Simple_repeat Simple_repeat 1 56 0 201 255 0 0 chr12 55017380 55017427 -89265062 + L2 LINE L2 3225 3271 -1 205 297 154 11 chr12 55017466 55017557 -89264932 - L2 LINE L2 -1 3271 3168 475 256 19 26 chr12 55019138 55019294 -89263195 - MIR3 SINE MIR -21 187 33 683 237 86 0 chr12 55020435 55020621 -89261868 + MIR SINE MIR 12 213 -49 375 60 0 0 chr12 55021151 55021201 -89261288 + (TG)n Simple_repeat Simple_repeat 1 50 0 288 264 35 0 chr12 55021207 55021294 -89261195 + L3 LINE CR1 1285 1374 -203 214 298 0 0 chr12 55021365 55021422 -89261067 + L3 LINE CR1 1405 1461 -116 227 224 53 40 chr12 55021762 55021838 -89260651 - MIR SINE MIR -70 138 62 228 135 0 0 chr12 55023589 55023626 -89258863 + (CA)n Simple_repeat Simple_repeat 2 38 0 228 135 0 0 chr12 55024505 55024542 -89257947 + (CA)n Simple_repeat Simple_repeat 2 38 0 401 351 67 13 chr12 55024619 55024702 -89257787 - L1ME4a LINE L1 -3 6118 6041 2175 123 0 7 chr12 55024702 55025011 -89257478 + AluSx SINE Alu 1 307 -5 401 351 67 13 chr12 55025011 55025152 -89257337 - L1ME4a LINE L1 -80 6041 5882 1884 286 52 17 chr12 55025277 55025879 -89256610 - HERV16 LTR ERVL -2363 2633 2011 1432 217 153 0 chr12 55025885 55026239 -89256250 - MLT1F1 LTR MaLR -7 560 152 812 217 101 24 chr12 55026239 55026446 -89256043 + MER58A DNA MER1_type 1 223 -1 607 206 16 0 chr12 55026447 55026573 -89255916 - MLT1F1 LTR MaLR -408 159 32 672 290 63 0 chr12 55026585 55026806 -89255683 - HERV16 LTR ERVL -2985 2011 1777 1430 296 52 15 chr12 55026907 55027506 -89254983 - HERV16 LTR ERVL -3418 1578 958 508 308 65 70 chr12 55027508 55027921 -89254568 + L2 LINE L2 2862 3272 0 2296 105 7 3 chr12 55027923 55028227 -89254262 + AluSg SINE Alu 1 305 -5 261 267 50 43 chr12 55028237 55028351 -89254138 - L1ME4a LINE L1 -111 6010 5893 1793 55 0 4 chr12 55028351 55028589 -89253900 - L1PA6 LINE L1 -5 6149 5913 261 267 50 43 chr12 55028589 55028635 -89253854 - L1ME4a LINE L1 -228 5893 5849 607 179 65 140 chr12 55029411 55029539 -89252950 - MIR SINE MIR -1 261 156 2284 111 0 10 chr12 55029539 55029845 -89252644 - AluSx SINE Alu -9 303 1 607 179 65 140 chr12 55029845 55029945 -89252544 - MIR SINE MIR -106 156 50 379 319 30 15 chr12 55030130 55030265 -89252224 + MIR3 SINE MIR 9 145 -63 737 300 113 13 chr12 55031056 55031505 -89250984 + L2 LINE L2 2765 3263 -50 552 304 119 13 chr12 55032620 55032847 -89249642 - MIR SINE MIR 0 262 12 228 298 84 46 chr12 55033266 55033397 -89249092 - L2 LINE L2 0 3313 3178 326 256 34 34 chr12 55034409 55034526 -89247963 - MIR3 SINE MIR -11 197 81 272 350 118 0 chr12 55035388 55035574 -89246915 - MIR SINE MIR -3 259 52 1746 160 11 83 chr12 55038391 55038542 -89243947 - MER7A DNA MER2_type -2693 345 185 2279 98 0 0 chr12 55038542 55038847 -89243642 - AluSx SINE Alu -5 307 3 1542 125 22 0 chr12 55038851 55039075 -89243414 + MER30 DNA MER1_type 1 229 -1 1746 160 11 83 chr12 55039075 55039292 -89243197 - MER7A DNA MER2_type -2856 182 1 781 234 73 10 chr12 55039345 55039550 -89242939 + MER58A DNA MER1_type 4 221 -3 570 248 94 0 chr12 55040219 55040368 -89242121 + Charlie8 DNA MER1_type 103 265 -2152 413 261 9 9 chr12 55040461 55040576 -89241913 - MIR3 SINE MIR -91 117 3 252 186 0 0 chr12 55040984 55041027 -89241462 + MER91 DNA MER1_type 98 140 0 197 292 67 11 chr12 55042312 55042401 -89240088 + MIR SINE MIR 39 132 -76 231 293 13 27 chr12 55042570 55042645 -89239844 - L2 LINE L2 -2 3270 3197 235 267 0 47 chr12 55043317 55043403 -89239086 + L2 LINE L2 3231 3312 -1 264 297 90 21 chr12 55043430 55043575 -89238914 - L3b LINE CR1 -101 1482 1328 261 269 21 4 chr12 55045112 55045224 -89237265 + MIR SINE MIR 27 137 -71 798 260 135 13 chr12 55045240 55045632 -89236857 + MER113 DNA MER1_type? 36 475 -46 546 286 35 0 chr12 55046571 55046742 -89235747 + MIR SINE MIR 86 262 0 444 305 26 59 chr12 55046915 55047146 -89235343 - MIR SINE MIR -13 249 24 4223 90 32 7 chr12 55047706 55048272 -89234217 - LTR19B LTR ERV1 0 580 1 207 328 0 0 chr12 55048377 55048441 -89234048 + L3b LINE CR1 1318 1381 -202 191 320 54 54 chr12 55049171 55049393 -89233096 - L2 LINE L2 -218 3054 2833 456 293 144 18 chr12 55049640 55049869 -89232620 + MIR SINE MIR 5 262 0 3310 114 24 24 chr12 55050254 55050746 -89231743 - LTR22B LTR ERVK 0 492 1 197 295 89 18 chr12 55051809 55051921 -89230568 - L2 LINE L2 -14 3258 3139 369 0 0 0 chr12 55051922 55051963 -89230526 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 662 248 156 9 chr12 55052023 55052322 -89230167 - MER57A LTR ERV1 0 510 98 420 191 14 78 chr12 55052330 55052471 -89230018 - LTR21B LTR ERV1 0 438 307 2176 102 0 3 chr12 55052560 55052853 -89229636 + AluSg SINE Alu 1 292 -18 1269 238 16 30 chr12 55053043 55053643 -89228846 + MER57-int LTR ERV1 2509 3116 -1755 1749 136 16 52 chr12 55053643 55053952 -89228537 - AluSx SINE Alu -14 298 1 1269 238 16 30 chr12 55053952 55053970 -89228519 + MER57-int LTR ERV1 3116 4116 -755 252 186 0 0 chr12 55054416 55054459 -89228030 + MER91 DNA MER1_type 1 43 -97 630 290 45 0 chr12 55055347 55055523 -89226966 + MER63A DNA MER1_type 27 210 0 250 176 20 0 chr12 55056174 55056225 -89226264 + MER34C LTR ERV1 37 88 -497 1090 147 0 0 chr12 55056228 55056384 -89226105 - AluJ SINE Alu -10 292 137 770 142 0 64 chr12 55056389 55056416 -89226073 - AluJ SINE Alu -179 133 106 2363 122 21 29 chr12 55056416 55056794 -89225695 - THE1C LTR MaLR 0 375 1 770 142 0 64 chr12 55056794 55056907 -89225582 - AluJ SINE Alu -206 106 2 933 249 80 19 chr12 55056921 55057246 -89225243 + MER34B LTR ERV1 40 384 -181 1674 142 81 0 chr12 55057249 55057544 -89224945 - MER2 DNA MER2_type -25 320 2 550 164 54 0 chr12 55057629 55057771 -89224718 + MER34B LTR ERV1 428 565 0 681 205 0 24 chr12 55057962 55058089 -89224400 + FLAM_C SINE Alu 1 124 -19 2239 98 0 3 chr12 55058100 55058396 -89224093 + AluSx SINE Alu 1 295 -17 202 214 18 18 chr12 55059044 55059100 -89223389 + CT-rich Low_complexity Low_complexity 2 57 0 1573 182 88 0 chr12 55059119 55059471 -89223018 + L1ME2 LINE L1 5456 5838 -328 314 219 0 105 chr12 55059471 55059576 -89222913 + L1ME2 LINE L1 6063 6156 -8 * 1252 277 133 26 chr12 55059559 55060964 -89221525 + L1ME3A LINE L1 4347 5885 -285 317 197 66 0 chr12 55061231 55061292 -89221197 + L1M4 LINE L1 2221 2285 -3861 310 265 20 61 chr12 55061311 55061458 -89221031 - MER112 DNA MER1_type -116 144 4 456 230 54 112 chr12 55061483 55061779 -89220710 + L1ME3A LINE L1 5671 5949 -221 398 304 184 30 chr12 55063181 55063382 -89219107 - L1M4 LINE L1 -2127 4019 3788 340 313 0 0 chr12 55063481 55063577 -89218912 - MIR SINE MIR -68 194 99 548 258 93 81 chr12 55064071 55064490 -89217999 + Charlie8 DNA MER1_type 36 459 -1958 461 237 53 8 chr12 55066044 55066175 -89216314 - MIR SINE MIR -50 212 76 207 267 173 13 chr12 55067679 55067754 -89214735 - L2 LINE L2 0 3272 3186 1715 165 0 31 chr12 55069558 55069880 -89212609 - AluJo SINE Alu 0 312 1 283 198 178 10 chr12 55069903 55070004 -89212485 + MIR SINE MIR 101 218 -44 2217 84 0 13 chr12 55070079 55070378 -89212111 - AluY SINE Alu -16 295 1 1866 140 3 0 chr12 55070956 55071242 -89211247 + AluSg SINE Alu 1 287 -23 201 94 0 0 chr12 55071580 55071612 -89210877 + (TG)n Simple_repeat Simple_repeat 1 32 0 187 326 70 16 chr12 55072674 55072803 -89209686 - L2 LINE L2 -14 3258 3123 252 186 0 0 chr12 55075918 55075961 -89206528 - MER91 DNA MER1_type 0 140 98 199 374 84 0 chr12 55077981 55078064 -89204425 + MIR3 SINE MIR 106 195 -13 183 291 223 10 chr12 55078062 55078165 -89204324 - L2 LINE L2 0 3313 3189 * 319 236 225 47 chr12 55078252 55078443 -89204046 - MIR SINE MIR -6 256 32 971 175 21 16 chr12 55079760 55079949 -89202540 - MER20 DNA MER1_type 0 219 30 407 297 48 42 chr12 55080070 55080235 -89202254 + MIR3 SINE MIR 19 184 -24 431 264 41 25 chr12 55080277 55080398 -89202091 + MIR SINE MIR 49 171 -91 325 273 157 10 chr12 55080401 55080626 -89201863 - MLT1G LTR MaLR 0 590 323 538 201 101 27 chr12 55080634 55080783 -89201706 - LTR41 LTR ERVL -6 767 608 560 167 321 0 chr12 55080945 55081113 -89201376 - MLT1H1 LTR MaLR -3 552 331 435 273 15 23 chr12 55081183 55081315 -89201174 - MLT1H1 LTR MaLR -339 210 80 301 316 40 40 chr12 55082173 55082347 -89200142 + L2 LINE L2 3140 3313 0 244 250 0 0 chr12 55082348 55082400 -89200089 + L2 LINE L2 2992 3043 -229 228 209 33 66 chr12 55082745 55082836 -89199653 - MIR3 SINE MIR -15 193 106 250 297 0 0 chr12 55084355 55084419 -89198070 + (CA)n Simple_repeat Simple_repeat 2 65 0 580 259 94 6 chr12 55085331 55085501 -89196988 + MIR3 SINE MIR 17 201 -7 460 332 47 21 chr12 55085818 55086008 -89196481 - MER91A DNA MER1_type 0 196 2 311 44 22 0 chr12 55086648 55086693 -89195796 + (CA)n Simple_repeat Simple_repeat 2 47 0 208 238 0 0 chr12 55087058 55087100 -89195389 + MER91 DNA MER1_type 99 140 0 1296 87 0 0 chr12 55088560 55088732 -89193757 - AluY SINE Alu -9 302 131 308 343 60 0 chr12 55089101 55089235 -89193254 + L2 LINE L2 3125 3266 -6 221 328 47 0 chr12 55089989 55090053 -89192436 + MIR SINE MIR 50 116 -146 294 277 201 6 chr12 55090297 55090456 -89192033 - MIR3 SINE MIR 0 208 19 232 333 118 0 chr12 55090831 55090933 -89191556 + L2 LINE L2 3126 3239 -33 207 350 10 20 chr12 55092048 55092148 -89190341 + MIR SINE MIR 17 115 -147 184 286 20 0 chr12 55092119 55092168 -89190321 - L2 LINE L2 -184 3088 3039 * 416 264 56 68 chr12 55092277 55092527 -89189962 - MER112 DNA MER1_type -6 254 8 5927 144 16 4 chr12 55092530 55093852 -89188637 + L1MA4 LINE L1 4962 6299 -1 207 0 0 0 chr12 55093857 55093880 -89188609 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1106 223 24 0 chr12 55093892 55094143 -89188346 + MIR SINE MIR 6 262 0 345 294 20 0 chr12 55094244 55094346 -89188143 + MIR SINE MIR 158 261 -1 212 338 106 13 chr12 55094793 55094944 -89187545 + L3b LINE CR1 1304 1468 -115 313 100 0 0 chr12 55096894 55096944 -89185545 - L2 LINE L2 -1 3312 3263 617 289 78 23 chr12 55097253 55097471 -89185018 + MIR SINE MIR 31 260 -2 705 265 115 7 chr12 55097541 55097820 -89184669 + L1ME3A LINE L1 5639 5947 -223 204 182 0 0 chr12 55098148 55098192 -89184297 + CT-rich Low_complexity Low_complexity 1 44 0 681 239 86 10 chr12 55099256 55099461 -89183028 + MIR SINE MIR 27 248 -14 1421 109 0 71 chr12 55099573 55099812 -89182677 - AluSx SINE Alu -90 222 1 245 319 92 8 chr12 55099812 55099931 -89182558 + L1MC4 LINE L1 7366 7494 -548 851 193 4 107 chr12 55099943 55100176 -89182313 + MER3 DNA MER1_type 1 209 0 492 294 188 20 chr12 55100254 55100547 -89181942 + L1MC4 LINE L1 7701 8042 0 291 300 0 10 chr12 55100768 55100868 -89181621 + C-rich Low_complexity Low_complexity 1 99 0 225 146 0 0 chr12 55101688 55101736 -89180753 + (CA)n Simple_repeat Simple_repeat 1 48 0 2290 101 0 3 chr12 55104749 55105056 -89177433 - AluSp SINE Alu -7 306 1 275 167 0 0 chr12 55105084 55105132 -89177357 - MIR SINE MIR -83 125 78 189 0 0 0 chr12 55105444 55105465 -89177024 + (CTG)n Simple_repeat Simple_repeat 2 22 0 1556 200 13 7 chr12 55105465 55105765 -89176724 - AluJo SINE Alu -10 302 1 737 255 66 12 chr12 55106311 55106554 -89175935 - MIR SINE MIR -2 260 5 237 383 0 11 chr12 55106891 55106985 -89175504 + MIR SINE MIR 50 142 -120 228 233 0 0 chr12 55109074 55109117 -89173372 - MER91A DNA MER1_type -147 43 1 574 248 138 0 chr12 55112478 55112623 -89169866 + MER91A DNA MER1_type 12 176 -20 741 247 89 44 chr12 55113078 55113349 -89169140 - Charlie8 DNA MER1_type -2133 284 2 1411 202 186 18 chr12 55113526 55113853 -89168636 - MLT1E2 LTR MaLR -14 612 231 2393 65 0 13 chr12 55115236 55115544 -89166945 + AluSq SINE Alu 1 304 -9 280 355 19 9 chr12 55115865 55115972 -89166517 - MIR SINE MIR -81 127 20 23 0 0 0 chr12 55117877 55117900 -89164589 + AT_rich Low_complexity Low_complexity 1 23 0 624 293 80 39 chr12 55118583 55119172 -89163317 - L1ME LINE L1 -601 5561 4936 341 355 12 48 chr12 55119570 55119736 -89162753 + MIR SINE MIR 53 212 -50 555 255 36 47 chr12 55120359 55120551 -89161938 - MIR3 SINE MIR -12 196 7 665 210 150 0 chr12 55121037 55121204 -89161285 + MIR SINE MIR 3 194 -68 23 0 0 0 chr12 55121658 55121681 -89160808 + AT_rich Low_complexity Low_complexity 1 23 0 1756 151 0 0 chr12 55122086 55122351 -89160138 - AluSx SINE Alu -24 288 24 1065 219 45 8 chr12 55122375 55122621 -89159868 - MIR SINE MIR -5 257 3 645 232 32 32 chr12 55124729 55124914 -89157575 + MER5A DNA MER1_type 3 187 -2 353 256 268 0 chr12 55125111 55125275 -89157214 - MIR SINE MIR -6 256 49 318 204 54 163 chr12 55125959 55126474 -89156015 - MER45C DNA AcHobo -321 632 174 210 316 103 69 chr12 55128606 55128780 -89153709 - MIR3 SINE MIR -2 206 27 436 294 119 20 chr12 55131874 55132075 -89150414 + MIR SINE MIR 23 243 -19 180 0 0 0 chr12 55132076 55132096 -89150393 + (TTA)n Simple_repeat Simple_repeat 2 21 0 228 233 0 0 chr12 55133018 55133061 -89149428 - MER91A DNA MER1_type -147 43 1 292 254 79 26 chr12 55133527 55133659 -89148830 - MIR3 SINE MIR -15 193 53 704 255 106 10 chr12 55135285 55135526 -89146963 + MIR SINE MIR 3 262 0 205 283 0 50 chr12 55135552 55135612 -89146877 - L2 LINE L2 -2 3270 3214 258 262 159 16 chr12 55135662 55135788 -89146701 - MIR SINE MIR -61 201 58 247 245 174 0 chr12 55136250 55136348 -89146141 - MIR SINE MIR 0 262 148 558 201 13 6 chr12 55136572 55136731 -89145758 + (CA)n Simple_repeat Simple_repeat 2 161 0 396 299 66 6 chr12 55138960 55139127 -89143362 + MIR SINE MIR 26 202 -60 879 246 125 48 chr12 55141651 55142272 -89140217 + L2 LINE L2 2632 3313 0 323 292 80 7 chr12 55142928 55143065 -89139424 - MIR SINE MIR -17 245 99 582 237 242 5 chr12 55143068 55143279 -89139210 + MIR SINE MIR 2 262 0 284 250 33 22 chr12 55143290 55143382 -89139107 - MIR SINE MIR -164 98 6 3770 220 54 29 chr12 55143387 55144473 -89138016 - L1MDa LINE L1 -1580 4960 3847 427 204 9 19 chr12 55144497 55144605 -89137884 - L1MDa LINE L1 -3421 3119 3013 323 215 32 21 chr12 55144642 55144735 -89137754 + MER34 LTR ERV1 449 542 0 579 256 45 6 chr12 55144737 55144893 -89137596 - L1MDa LINE L1 -4119 2602 2441 681 222 0 0 chr12 55144920 55145055 -89137434 - AluJo SINE Alu -176 136 2 1087 225 119 68 chr12 55145056 55145788 -89136701 - L1MDa LINE L1 -4143 2397 1357 535 300 53 111 chr12 55146194 55146591 -89135898 + L2 LINE L2 2898 3271 -1 328 344 64 18 chr12 55146576 55146902 -89135587 - L2 LINE L2 -405 2909 2569 * 297 300 93 27 chr12 55149968 55150118 -89132371 + MER5B DNA MER1_type 1 160 -18 318 253 12 12 chr12 55154222 55154305 -89128184 - MIR3 SINE MIR -18 190 108 349 253 101 0 chr12 55156232 55156331 -89126158 - L2 LINE L2 0 3272 3164 809 126 39 0 chr12 55156355 55156482 -89126007 - FLAM_A SINE Alu -1 132 1 2845 258 112 18 chr12 55156994 55157410 -89125079 + L2 LINE L2 1883 2258 -1055 1672 149 95 9 chr12 55157410 55157726 -89124763 + MER2 DNA MER2_type 1 343 -1 2845 258 112 18 chr12 55157726 55158608 -89123881 + L2 LINE L2 2258 3312 -1 224 281 31 16 chr12 55158991 55159055 -89123434 + MIR SINE MIR 30 94 -168 336 239 34 11 chr12 55159057 55159145 -89123344 + MER97a DNA MER1_type? 2 91 -803 377 248 108 0 chr12 55159229 55159358 -89123131 + MIR SINE MIR 86 228 -34 213 275 50 12 chr12 55161026 55161106 -89121383 + L2 LINE L2 3189 3271 -1 564 141 96 30 chr12 55162033 55162168 -89120321 - L1MB8 LINE L1 -6 6172 6029 23 0 0 0 chr12 55162168 55162191 -89120298 + AT_rich Low_complexity Low_complexity 1 23 0 1093 135 6 13 chr12 55162192 55162348 -89120141 - FRAM SINE Alu -24 152 1 1798 225 39 11 chr12 55162385 55162843 -89119646 - L1MB8 LINE L1 -169 6009 5539 379 290 124 5 chr12 55166524 55166717 -89115772 - L3 LINE CR1 -1 1576 1361 2162 143 0 13 chr12 55167726 55168041 -89114448 + AluSx SINE Alu 1 311 -1 397 320 43 83 chr12 55168130 55168502 -89113987 + MLT1J LTR MaLR 153 509 -2 235 274 81 32 chr12 55168854 55168978 -89113511 + L2 LINE L2 2906 3035 -237 621 203 48 145 chr12 55169091 55169381 -89113108 + L2 LINE L2 3051 3312 -1 762 243 17 66 chr12 55171947 55172222 -89110267 + MIR SINE MIR 1 262 0 246 324 184 14 chr12 55172518 55172725 -89109764 + L2 LINE L2 3001 3242 -30 204 270 34 34 chr12 55173253 55173342 -89109147 - L2 LINE L2 -302 2970 2882 214 356 47 0 chr12 55173489 55173657 -89108832 - MIR3 SINE MIR -20 242 63 303 267 176 23 chr12 55175385 55175561 -89106928 - L3b LINE CR1 -22 1561 1359 213 39 0 0 chr12 55177361 55177387 -89105102 + (TAA)n Simple_repeat Simple_repeat 2 27 0 475 303 82 10 chr12 55177387 55177590 -89104899 - MIR SINE MIR -11 251 34 225 307 0 52 chr12 55178784 55178937 -89103552 + GA-rich Low_complexity Low_complexity 4 148 0 2780 95 11 0 chr12 55181703 55182060 -89100429 + SVA Other Other 1023 1383 -3 195 129 0 0 chr12 55182070 55182101 -89100388 + (A)n Simple_repeat Simple_repeat 1 31 0 183 208 57 19 chr12 55182828 55182881 -89099608 + L2 LINE L2 3215 3269 -3 283 284 14 0 chr12 55183589 55183663 -89098826 - MIR SINE MIR -105 157 83 325 347 40 0 chr12 55183783 55183907 -89098582 - L3 LINE CR1 -23 1554 1426 453 320 75 14 chr12 55184047 55184328 -89098161 - L3 LINE CR1 -507 1070 773 224 332 209 11 chr12 55185602 55185751 -89096738 + L3b LINE CR1 1356 1551 -32 2477 100 0 0 chr12 55185751 55186062 -89096427 - AluSx SINE Alu -1 311 1 224 332 209 11 chr12 55186062 55186099 -89096390 + L3b LINE CR1 1551 1579 -4 254 114 91 0 chr12 55186159 55186203 -89096286 - MLT2A2 LTR ERVL -405 48 1 390 260 0 0 chr12 55187523 55187650 -89094839 + (TG)n Simple_repeat Simple_repeat 1 127 0 549 191 167 19 chr12 55188287 55188449 -89094040 + MER5A DNA MER1_type 1 186 -3 307 275 194 37 chr12 55188838 55189246 -89093243 + L2 LINE L2 2781 3253 -60 418 259 189 0 chr12 55190253 55190396 -89092093 + MIR SINE MIR 23 192 -70 210 71 0 0 chr12 55190799 55190827 -89091662 + (T)n Simple_repeat Simple_repeat 1 28 0 824 259 37 45 chr12 55191830 55192064 -89090425 - MIR SINE MIR -4 258 25 1144 166 14 33 chr12 55192064 55192275 -89090214 + MER3 DNA MER1_type 2 208 -1 203 214 0 29 chr12 55192357 55192427 -89090062 + A-rich Low_complexity Low_complexity 5 72 0 315 0 0 0 chr12 55192475 55192510 -89089979 + (TG)n Simple_repeat Simple_repeat 1 35 0 182 296 120 56 chr12 55192631 55192739 -89089750 + MIR SINE MIR 36 150 -112 210 281 67 67 chr12 55194125 55194214 -89088275 - MIR SINE MIR -12 250 162 392 343 132 5 chr12 55194242 55194455 -89088034 - MIR SINE MIR -10 252 13 1061 207 62 36 chr12 55196716 55197020 -89085469 + MLT1C LTR MaLR 2 313 -154 603 160 88 24 chr12 55197135 55197260 -89085229 + MLT1C LTR MaLR 335 467 0 561 262 128 17 chr12 55198776 55198948 -89083541 - MIR SINE MIR -57 205 15 762 239 35 25 chr12 55198956 55199153 -89083336 - MIR SINE MIR 0 262 64 534 318 0 24 chr12 55199154 55199324 -89083165 - MIR3 SINE MIR -22 186 21 483 304 37 62 chr12 55200224 55200546 -89081943 - L2 LINE L2 -101 3212 2899 198 310 58 23 chr12 55201505 55201592 -89080897 + L2 LINE L2 3222 3311 -2 184 414 40 0 chr12 55202105 55202204 -89080285 - L3 LINE CR1 -28 1549 1447 257 235 142 58 chr12 55203497 55203600 -89078889 + MIR SINE MIR 37 150 -62 458 251 269 0 chr12 55206404 55206575 -89075914 + MIR SINE MIR 35 251 -11 198 375 44 15 chr12 55206598 55206734 -89075755 - L2 LINE L2 -4 3268 3129 1622 185 0 3 chr12 55207053 55207355 -89075134 - AluJb SINE Alu -11 301 1 214 253 165 13 chr12 55207442 55207521 -89074968 - MIR SINE MIR -116 146 56 498 198 17 43 chr12 55209312 55209428 -89073061 - L2 LINE L2 -5 3308 3196 303 231 77 11 chr12 55210277 55210368 -89072121 - MIR SINE MIR -70 138 42 794 171 120 6 chr12 55210576 55210734 -89071755 - AluJb SINE Alu -1 311 136 234 214 202 0 chr12 55211287 55211371 -89071118 - L2 LINE L2 0 3272 3172 1970 143 0 3 chr12 55211821 55212121 -89070368 + AluJb SINE Alu 2 300 -12 374 256 145 34 chr12 55214454 55214571 -89067918 + MIR SINE MIR 20 149 -113 218 32 32 0 chr12 55214721 55214752 -89067737 + (CAA)n Simple_repeat Simple_repeat 2 33 0 257 161 0 54 chr12 55214833 55214889 -89067600 + L1M3c LINE L1 1356 1408 -6088 416 266 35 9 chr12 55214922 55215035 -89067454 + L1M3c LINE L1 2048 2163 -5402 229 170 0 19 chr12 55215389 55215405 -89067084 + MER53 DNA DNA 138 153 -36 1502 193 3 27 chr12 55215405 55215706 -89066783 + AluJb SINE Alu 7 300 -12 229 170 0 19 chr12 55215706 55215742 -89066747 + MER53 DNA DNA 153 189 0 216 0 0 0 chr12 55216459 55216483 -89066006 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1443 183 11 8 chr12 55216522 55216784 -89065705 - AluJo SINE Alu -49 263 1 23 68 0 0 chr12 55216876 55216920 -89065569 + AT_rich Low_complexity Low_complexity 1 44 0 294 170 0 0 chr12 55216941 55216994 -89065495 - L1ME1 LINE L1 -6 6160 6108 1960 141 0 7 chr12 55217028 55217333 -89065156 - AluSx SINE Alu -9 303 1 808 260 88 44 chr12 55223935 55224504 -89057985 - L1MC5 LINE L1 -52 7909 7316 2221 108 0 0 chr12 55225185 55225492 -89056997 - AluSg SINE Alu -3 307 1 318 106 0 0 chr12 55226356 55226403 -89056086 + (CAT)n Simple_repeat Simple_repeat 2 48 0 414 306 85 10 chr12 55226933 55227132 -89055357 - L1MC5 LINE L1 -146 7815 7602 311 291 66 28 chr12 55227154 55227443 -89055046 - L1MC5 LINE L1 -402 7559 7260 1384 268 20 68 chr12 55227578 55228284 -89054205 - L1MC5 LINE L1 -730 7231 6558 272 55 455 0 chr12 55228295 55228350 -89054139 + MADE1 DNA Mariner 1 80 0 10490 143 26 11 chr12 55228466 55230575 -89051914 - L1P4 LINE L1 -494 5669 3533 2081 193 24 11 chr12 55230569 55230658 -89051831 - L1P4 LINE L1 -2871 3275 3189 * 1916 113 0 55 chr12 55230658 55230968 -89051521 - AluSx SINE Alu -19 293 1 2081 193 24 11 chr12 55230968 55231340 -89051149 - L1P4 LINE L1 -2957 3189 2808 1259 155 173 4 chr12 55231347 55231625 -89050864 + MER44D DNA MER2_type 226 605 0 292 288 0 0 chr12 55231636 55231709 -89050780 - MLT1F1 LTR MaLR -443 124 52 1284 220 31 23 chr12 55231714 55232068 -89050421 - L1MC3 LINE L1 -677 7108 6752 1594 201 28 79 chr12 55232068 55232497 -89049992 - MLT2D LTR ERVL -5 409 3 1084 204 207 7 chr12 55232516 55232801 -89049688 - L1MC3 LINE L1 -1040 6745 6404 945 214 0 0 chr12 55232910 55233097 -89049392 + L1PBa LINE L1 8 194 -6669 2297 137 49 0 chr12 55233103 55233468 -89049021 + L1PBa LINE L1 1001 1383 -5480 2282 131 3 0 chr12 55233468 55233803 -89048686 + L1PB1 LINE L1 5807 6142 -9 827 211 62 92 chr12 55233870 55234206 -89048283 + MLT2D LTR ERVL 41 366 -48 363 208 0 99 chr12 55234209 55234310 -89048179 + L1MC4 LINE L1 6613 6703 -1339 261 180 0 0 chr12 55234310 55234360 -89048129 + (TG)n Simple_repeat Simple_repeat 2 51 0 287 151 0 0 chr12 55234363 55234416 -89048073 + MLT2D LTR ERVL 464 516 -4 1388 221 13 29 chr12 55234419 55234735 -89047754 - L1MC3 LINE L1 -1378 6407 6097 5868 171 51 10 chr12 55234785 55236439 -89046050 + L1MC1 LINE L1 4600 6321 -12 2209 164 20 29 chr12 55236439 55236890 -89045599 + L1MA7 LINE L1 5841 6288 -3 5868 171 51 10 chr12 55236890 55236903 -89045586 + L1MC1 LINE L1 6321 6332 -1 254 200 60 0 chr12 55236910 55236960 -89045529 - L1MC3 LINE L1 -1672 6113 6061 3623 262 35 21 chr12 55236983 55238340 -89044149 - L1M4 LINE L1 -1476 4670 3296 1954 123 13 13 chr12 55238979 55239280 -89043209 - AluSx SINE Alu -11 301 1 345 259 83 48 chr12 55245596 55245824 -89036665 - L1MC5 LINE L1 -52 7909 7674 2150 119 0 7 chr12 55246015 55246318 -89036171 - AluSx SINE Alu -11 301 1 448 217 43 60 chr12 55246368 55246552 -89035937 - L1MC5 LINE L1 -465 7496 7316 2144 105 3 25 chr12 55246613 55246927 -89035562 + AluSx SINE Alu 1 307 -5 183 184 0 0 chr12 55247133 55247171 -89035318 + (TG)n Simple_repeat Simple_repeat 1 38 0 38 51 0 0 chr12 55247292 55247351 -89035138 + AT_rich Low_complexity Low_complexity 1 59 0 869 266 94 73 chr12 55247998 55248434 -89034055 + MLT2B1 LTR ERVL 20 464 -56 487 29 29 0 chr12 55248438 55248507 -89033982 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 279 0 0 0 chr12 55248546 55248577 -89033912 + (TG)n Simple_repeat Simple_repeat 2 32 0 2545 174 25 14 chr12 55248577 55249130 -89033359 + L1MC1 LINE L1 5135 5693 -640 2310 137 111 5 chr12 55249130 55249517 -89032972 + MSTA LTR MaLR 1 428 0 2545 174 25 14 chr12 55249517 55249556 -89032933 + L1MC1 LINE L1 5693 5730 -603 704 82 10 10 chr12 55249558 55249656 -89032833 + MER4A LTR ERV1 1 98 -566 1883 145 8 41 chr12 55249656 55250010 -89032479 + MER4A LTR ERV1 261 664 0 1905 180 37 3 chr12 55250010 55250388 -89032101 + L1MC1 LINE L1 5729 6119 -214 1481 179 14 4 chr12 55250391 55250670 -89031819 + L1MC1 LINE L1 6039 6320 -13 2033 126 55 25 chr12 55250672 55251036 -89031453 + THE1C LTR MaLR 1 375 0 6555 133 69 7 chr12 55251036 55252064 -89030425 + THE1C-int LTR MaLR 1 1092 -488 325 149 28 103 chr12 55252065 55252172 -89030317 + L1MA7 LINE L1 6187 6285 -6 229 220 60 0 chr12 55252192 55252242 -89030247 - L1MC3 LINE L1 -1672 6113 6061 3099 262 27 33 chr12 55252318 55252614 -89029875 - L1M4 LINE L1 -1538 4608 4312 1702 201 0 3 chr12 55252614 55252939 -89029550 + AluJb SINE Alu 1 312 0 3099 262 27 33 chr12 55252939 55253888 -89028601 - L1M4 LINE L1 -1834 4312 3370 9941 142 15 6 chr12 55253911 55256610 -89025879 - L1MA5A LINE L1 0 6297 3574 2807 166 40 2 chr12 55256610 55257188 -89025301 + L1MA5A LINE L1 2995 3594 -2552 423 271 45 7 chr12 55257936 55258091 -89024398 - L1ME LINE L1 -383 5738 5578 1238 147 73 18 chr12 55260531 55260632 -89021857 - MER30 DNA MER1_type 0 230 136 2168 114 0 7 chr12 55260632 55260929 -89021560 - AluSg SINE Alu -6 304 10 1238 147 73 18 chr12 55260929 55260941 -89021548 - MER30 DNA MER1_type -94 136 126 189 0 0 0 chr12 55260941 55260962 -89021527 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1238 147 73 18 chr12 55260962 55261065 -89021424 - MER30 DNA MER1_type -104 126 1 777 172 0 0 chr12 55266290 55266412 -89016077 + MER58B DNA MER1_type 220 341 0 506 292 79 0 chr12 55266412 55266614 -89015875 + MIR SINE MIR 17 234 -28 24 0 0 0 chr12 55268652 55268676 -89013813 + AT_rich Low_complexity Low_complexity 1 24 0 1920 155 0 23 chr12 55268988 55269291 -89013198 + AluJo SINE Alu 2 297 -15 742 224 0 33 chr12 55270806 55270989 -89011500 - AluJo SINE Alu -13 299 123 1916 253 37 7 chr12 55271007 55271552 -89010937 - L1ME2 LINE L1 -9 6155 5595 1232 184 34 26 chr12 55271571 55271838 -89010651 - L1MC1 LINE L1 0 6613 6345 3249 82 26 0 chr12 55271848 55272274 -89010215 - LTR3b LTR ERVK 0 437 1 10544 222 49 29 chr12 55272274 55272756 -89009733 - L1MC1 LINE L1 -263 6350 5879 2321 96 0 0 chr12 55272756 55273047 -89009442 - AluSg SINE Alu -19 291 1 10544 222 49 29 chr12 55273047 55275715 -89006774 - L1MC1 LINE L1 -734 5879 3267 2230 112 7 0 chr12 55275715 55276009 -89006480 - AluSg SINE Alu -14 296 1 10544 222 49 29 chr12 55276009 55277028 -89005461 - L1MC1 LINE L1 -3346 3267 2270 840 209 166 33 chr12 55277028 55277239 -89005250 - MER8 DNA MER2_type 0 239 1 10544 222 49 29 chr12 55277239 55279096 -89003393 - L1MC1 LINE L1 -4343 2270 1 960 159 16 16 chr12 55279930 55280119 -89002370 - MER53 DNA DNA 0 189 1 610 237 112 9 chr12 55280267 55280491 -89001998 - L1M4 LINE L1 -3250 2896 2650 219 114 45 0 chr12 55280519 55280563 -89001926 + (TA)n Simple_repeat Simple_repeat 2 47 0 1222 277 50 14 chr12 55280611 55281055 -89001434 - L1ME2 LINE L1 -992 5154 4690 4749 88 8 9 chr12 55281055 55281710 -89000779 - L1PA10 LINE L1 -1 6167 5514 1222 277 50 14 chr12 55281710 55281748 -89000741 - L1ME2 LINE L1 -1456 4690 4655 745 197 0 26 chr12 55281748 55281900 -89000589 - MLT1A2 LTR MaLR 0 374 227 294 192 192 13 chr12 55281977 55282055 -89000434 - MLT1A2 LTR MaLR -273 92 1 1572 253 76 3 chr12 55282055 55282660 -88999829 - L1ME2 LINE L1 -1487 4659 4011 1167 220 110 33 chr12 55282744 55283033 -88999456 + LTR52 LTR ERVL 28 352 -69 392 0 21 0 chr12 55283033 55283081 -88999408 + (TG)n Simple_repeat Simple_repeat 1 49 0 1167 220 110 33 chr12 55283081 55283155 -88999334 + LTR52 LTR ERVL 352 419 -2 2786 197 26 101 chr12 55283158 55283728 -88998761 + LTR52-int LTR ERVL 5 511 -3045 2196 112 3 0 chr12 55283728 55284031 -88998458 + AluSp SINE Alu 1 304 -9 2786 197 26 101 chr12 55284031 55284182 -88998307 + LTR52-int LTR ERVL 511 672 -2884 4692 222 33 18 chr12 55284347 55285802 -88996687 + LTR52-int LTR ERVL 972 2511 -1045 203 385 0 0 chr12 55286451 55286568 -88995921 + (CCG)n Simple_repeat Simple_repeat 2 118 0 240 316 0 0 chr12 55291279 55291396 -88991093 + (CCA)n Simple_repeat Simple_repeat 1 117 0 258 85 0 3 chr12 55294818 55294859 -88987630 - MADE1 DNA Mariner -43 37 2 206 299 58 0 chr12 55295823 55295910 -88986579 + MIR SINE MIR 39 130 -132 246 297 0 0 chr12 55296333 55296397 -88986092 - MIR SINE MIR -6 256 193 658 234 156 9 chr12 55298499 55298717 -88983772 - MIR SINE MIR -3 259 10 473 300 85 45 chr12 55299537 55299760 -88982729 - MIR SINE MIR -16 246 15 1496 226 83 50 chr12 55300683 55301165 -88981324 + MLT1D LTR MaLR 1 498 -7 480 333 9 18 chr12 55303107 55303329 -88979160 - L3 LINE CR1 -128 1449 1230 388 261 19 25 chr12 55303526 55303683 -88978806 + MER113 DNA MER1_type? 2 157 -364 358 308 58 12 chr12 55304729 55304901 -88977588 + MIR SINE MIR 69 248 -14 487 221 58 16 chr12 55305091 55305275 -88977214 + MER115 DNA AcHobo 9 232 -461 489 216 14 79 chr12 55305352 55305491 -88976998 + MER115 DNA AcHobo 408 537 -156 410 266 0 70 chr12 55306018 55306161 -88976328 + MIR3 SINE MIR 61 193 -15 318 261 193 8 chr12 55306366 55306485 -88976004 - MIR3 SINE MIR -26 182 42 3346 217 29 29 chr12 55306782 55307184 -88975305 - MER63C DNA MER1_type -133 927 526 1201 216 101 7 chr12 55307184 55307480 -88975009 + MER33 DNA MER1_type 1 324 0 3346 217 29 29 chr12 55307480 55307861 -88974628 - MER63C DNA MER1_type -534 526 141 2463 60 0 0 chr12 55307861 55308163 -88974326 + AluY SINE Alu 1 302 -9 3346 217 29 29 chr12 55308163 55308261 -88974228 - MER63C DNA MER1_type -918 142 45 245 137 74 158 chr12 55308263 55308358 -88974131 - MER63C DNA MER1_type -843 87 1 223 171 0 0 chr12 55309402 55309443 -88973046 - MIR SINE MIR -4 258 218 270 81 0 0 chr12 55309476 55309513 -88972976 + (TTA)n Simple_repeat Simple_repeat 3 39 0 227 222 0 0 chr12 55309767 55309815 -88972674 - MIR SINE MIR -63 145 102 258 272 109 0 chr12 55313095 55313187 -88969302 + MIR SINE MIR 111 212 -50 358 312 0 0 chr12 55313229 55313338 -88969151 - MER117 DNA MER1_type -21 176 68 309 347 40 35 chr12 55313348 55313521 -88968968 - MER5B DNA MER1_type -3 175 2 285 98 0 0 chr12 55314063 55314104 -88968385 + (CA)n Simple_repeat Simple_repeat 2 42 0 507 276 112 6 chr12 55316731 55316901 -88965588 + MIR3 SINE MIR 15 202 -6 261 255 13 75 chr12 55318300 55318454 -88964035 - MIR SINE MIR -6 256 63 603 178 86 10 chr12 55318461 55318632 -88963857 + MIR3 SINE MIR 15 195 -67 492 224 88 0 chr12 55318787 55318912 -88963577 - L2 LINE L2 -2 3311 3176 185 261 14 14 chr12 55320834 55320903 -88961586 - L2 LINE L2 -204 3068 3000 342 345 76 10 chr12 55321666 55321863 -88960626 - MIR SINE MIR -39 223 14 516 284 70 30 chr12 55323283 55323518 -88958971 - MIR SINE MIR -1 261 17 227 178 0 0 chr12 55323882 55323927 -88958562 - L3b LINE CR1 -198 1385 1341 311 299 16 16 chr12 55325932 55326059 -88956430 + CT-rich Low_complexity Low_complexity 2 128 0 4695 150 15 19 chr12 55326268 55326782 -88955707 + LTR39 LTR ERV1 1 512 -271 1861 64 0 13 chr12 55326782 55327018 -88955471 + L1PA8A LINE L1 5899 6131 0 4695 150 15 19 chr12 55327018 55327282 -88955207 + LTR39 LTR ERV1 512 776 -7 275 307 13 0 chr12 55327311 55327386 -88955103 - L2 LINE L2 -1 3271 3196 316 239 217 27 chr12 55328008 55328192 -88954297 + MIR SINE MIR 34 252 -10 2003 111 0 17 chr12 55328410 55328722 -88953767 + AluSx SINE Alu 1 307 0 479 282 15 35 chr12 55330656 55330882 -88951607 + MIR SINE MIR 20 232 -30 * 938 236 14 69 chr12 55330856 55331051 -88951438 - MIR SINE MIR -1 261 84 2200 106 0 0 chr12 55331051 55331343 -88951146 - AluSx SINE Alu -19 293 2 938 236 14 69 chr12 55331343 55331422 -88951067 - MIR SINE MIR -178 84 2 189 0 0 0 chr12 55332659 55332680 -88949809 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 231 276 163 16 chr12 55333003 55333126 -88949363 - L2 LINE L2 0 3272 3132 4648 166 21 15 chr12 55333728 55334239 -88948250 - L1MB5 LINE L1 0 6174 5668 1416 164 15 102 chr12 55334239 55334574 -88947915 - AluJo SINE Alu -6 306 1 4648 166 21 15 chr12 55334574 55335386 -88947103 - L1MB5 LINE L1 -506 5668 4843 962 190 64 26 chr12 55336480 55336730 -88945759 + Tigger4(Zombi) DNA MER2_type 1 2731 0 281 341 134 0 chr12 55337527 55337706 -88944783 + MIR SINE MIR 60 262 0 242 310 115 0 chr12 55338669 55338756 -88943733 - L2 LINE L2 -13 3259 3163 306 342 33 60 chr12 55339129 55339313 -88943176 - MIR SINE MIR -58 204 26 443 304 43 0 chr12 55340895 55341033 -88941456 + MIR3 SINE MIR 43 186 -22 261 253 162 10 chr12 55343004 55343103 -88939386 - MIR SINE MIR -77 131 18 187 353 20 10 chr12 55345789 55345891 -88936598 + L3 LINE CR1 1460 1562 -15 2200 138 0 0 chr12 55346190 55346488 -88936001 + AluSx SINE Alu 1 298 -14 206 259 35 0 chr12 55347203 55347261 -88935228 + (TAG)n Simple_repeat Simple_repeat 1 60 0 362 279 259 5 chr12 55347269 55347466 -88935023 - MIR SINE MIR -10 252 6 207 77 26 51 chr12 55349309 55349326 -88933163 + (GAAA)n Simple_repeat Simple_repeat 2 18 -21 2345 105 3 0 chr12 55349326 55349632 -88932857 + AluSq SINE Alu 1 307 -6 207 77 26 51 chr12 55349632 55349653 -88932836 + (GAAA)n Simple_repeat Simple_repeat 18 39 0 370 256 0 44 chr12 55350152 55350242 -88932247 + MER81 DNA DNA 1 86 -28 541 213 161 0 chr12 55350922 55351077 -88931412 - MER91A DNA MER1_type -16 180 1 534 255 21 7 chr12 55353213 55353358 -88929131 - MIR SINE MIR -24 238 92 190 224 94 106 chr12 55353965 55354050 -88928439 + L2 LINE L2 3025 3108 -164 580 238 44 125 chr12 55354891 55355139 -88927350 + MIR SINE MIR 20 247 -15 191 268 195 0 chr12 55355173 55355255 -88927234 - MIR SINE MIR -158 104 7 258 280 68 17 chr12 55355636 55355754 -88926735 + MIR SINE MIR 30 153 -55 208 309 21 10 chr12 55355900 55355997 -88926492 - L2 LINE L2 -298 2974 2877 339 113 0 0 chr12 55356141 55356194 -88926295 + (CA)n Simple_repeat Simple_repeat 2 54 0 439 242 159 22 chr12 55356225 55356407 -88926082 + L2 LINE L2 3101 3307 -6 222 175 0 35 chr12 55357914 55357971 -88924518 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 1709 110 0 55 chr12 55359743 55360035 -88922454 + L1PA10 LINE L1 5889 6164 -4 27 0 0 26 chr12 55360035 55360061 -88922428 + AT_rich Low_complexity Low_complexity 1 27 -10 2102 111 3 14 chr12 55360061 55360349 -88922140 + AluSx SINE Alu 1 285 -27 27 0 0 26 chr12 55360349 55360360 -88922129 + AT_rich Low_complexity Low_complexity 27 37 0 189 0 0 0 chr12 55360360 55360381 -88922108 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 243 125 0 0 chr12 55361327 55361367 -88921122 + (TG)n Simple_repeat Simple_repeat 2 41 0 291 140 0 0 chr12 55362702 55362752 -88919737 + (CA)n Simple_repeat Simple_repeat 2 51 0 258 358 46 9 chr12 55363506 55363615 -88918874 + L2 LINE L2 3143 3255 -17 4947 232 80 53 chr12 55364386 55364971 -88917518 + Charlie2a DNA MER1_type 5 573 -2289 2031 161 9 46 chr12 55364971 55365407 -88917082 + L1MB3 LINE L1 5760 6179 -4 4947 232 80 53 chr12 55365407 55365537 -88916952 + Charlie2a DNA MER1_type 573 698 -2164 4281 61 14 3 chr12 55365537 55366108 -88916381 + L1PA5 LINE L1 5577 6153 -1 4947 232 80 53 chr12 55366108 55367360 -88915129 + Charlie2a DNA MER1_type 698 2026 -836 249 195 241 75 chr12 55367360 55367534 -88914955 - L2 LINE L2 -2 3311 3109 1790 264 87 37 chr12 55367537 55367885 -88914604 + Charlie2a DNA MER1_type 2025 2354 -508 1836 138 14 10 chr12 55367885 55368174 -88914315 - AluSx SINE Alu -2 310 21 1790 264 87 37 chr12 55368174 55368606 -88913883 + Charlie2a DNA MER1_type 2354 2844 -18 796 248 48 5 chr12 55368829 55369039 -88913450 - MIR SINE MIR -6 256 38 198 278 133 11 chr12 55371188 55371278 -88911211 + MIR SINE MIR 92 192 -70 2519 92 0 8 chr12 55371775 55372133 -88910356 + THE1A LTR MaLR 1 355 0 649 233 62 11 chr12 55372138 55372314 -88910175 - MIR SINE MIR -14 248 64 232 227 15 30 chr12 55375171 55375237 -88907252 + MER103 DNA DNA 29 93 -73 1524 176 35 0 chr12 55375244 55375534 -88906955 + L1MC1 LINE L1 6019 6318 -15 282 179 0 0 chr12 55375546 55375602 -88906887 + (TGGA)n Simple_repeat Simple_repeat 4 59 0 26 50 0 0 chr12 55375780 55375820 -88906669 + AT_rich Low_complexity Low_complexity 1 40 0 714 246 116 55 chr12 55376320 55376665 -88905824 + MLT1J2 LTR MaLR 70 435 -15 754 246 32 32 chr12 55376843 55377063 -88905426 - MIR SINE MIR -12 250 31 458 293 144 26 chr12 55377217 55377565 -88904924 + L2 LINE L2 2916 3304 -9 296 376 95 0 chr12 55377773 55377962 -88904527 - MIR SINE MIR -7 255 49 223 351 0 9 chr12 55378355 55378469 -88904020 + (CATA)n Simple_repeat Simple_repeat 1 113 0 213 185 71 75 chr12 55380964 55381033 -88901456 + MIR SINE MIR 69 143 -82 958 249 52 71 chr12 55381046 55381388 -88901101 + MER113 DNA MER1_type? 1 335 -186 2182 125 0 3 chr12 55381388 55381717 -88900772 - AluSx SINE Alu 0 312 1 958 249 52 71 chr12 55381717 55381812 -88900677 + MER113 DNA MER1_type? 335 430 -91 443 307 90 60 chr12 55383080 55383445 -88899044 + L2 LINE L2 2897 3272 0 304 306 37 0 chr12 55384108 55384216 -88898273 + MIR SINE MIR 30 141 -67 218 333 17 26 chr12 55386135 55386252 -88896237 + MIR3 SINE MIR 41 156 -52 261 262 79 79 chr12 55388215 55388379 -88894110 + L2 LINE L2 2624 2787 -527 1021 172 16 0 chr12 55388644 55388830 -88893659 - MER5A DNA MER1_type 0 189 1 199 338 38 0 chr12 55390658 55390738 -88891751 - MIR SINE MIR -68 194 112 246 276 0 0 chr12 55390892 55390950 -88891539 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 260 269 0 0 chr12 55390952 55391019 -88891470 - L2 LINE L2 0 3272 3206 2254 106 33 0 chr12 55391444 55391747 -88890742 - AluSp SINE Alu 0 313 1 219 204 0 0 chr12 55392615 55392664 -88889825 + GA-rich Low_complexity Low_complexity 2 50 0 2363 218 50 30 chr12 55392786 55393659 -88888830 + L1MD1 LINE L1 107 1320 -5220 23 0 0 0 chr12 55393659 55393682 -88888807 + AT_rich Low_complexity Low_complexity 1 23 0 6198 187 69 18 chr12 55394130 55396028 -88886461 + L1MD1 LINE L1 1307 3311 -3229 481 190 10 10 chr12 55396029 55396129 -88886360 - MLT1B LTR MaLR -290 100 1 4186 197 35 37 chr12 55396150 55397459 -88885030 + L1MD1 LINE L1 5201 6505 -131 747 206 169 0 chr12 55397510 55397699 -88884790 - MIR SINE MIR -30 232 12 195 336 45 9 chr12 55397705 55397815 -88884674 - MER5B DNA MER1_type -39 139 26 508 241 62 37 chr12 55397886 55398048 -88884441 - MLT1J LTR MaLR -343 168 3 523 248 9 0 chr12 55398150 55398263 -88884226 + MER81 DNA DNA 1 114 0 242 221 26 65 chr12 55398373 55398450 -88884039 - L2 LINE L2 -1 3312 3239 252 296 224 44 chr12 55398467 55398717 -88883772 + L2 LINE L2 2978 3272 0 180 223 50 99 chr12 55400811 55400932 -88881557 - MIR SINE MIR -129 133 19 2507 190 44 0 chr12 55402907 55403359 -88879130 + MER70A LTR ERVL 1 472 0 2105 117 3 0 chr12 55404296 55404596 -88877893 + AluSx SINE Alu 1 301 -11 315 305 152 0 chr12 55406479 55406630 -88875859 + L1ME4a LINE L1 5743 5916 -205 246 200 167 17 chr12 55406743 55406863 -88875626 + L1ME4a LINE L1 5978 6115 -6 2436 111 22 8 chr12 55406923 55407294 -88875195 + L1PB1 LINE L1 5771 6146 -5 315 259 152 9 chr12 55407752 55407864 -88874625 + MIR SINE MIR 36 163 -99 198 103 0 0 chr12 55407992 55408021 -88874468 + (CAG)n Simple_repeat Simple_repeat 1 29 0 706 288 27 9 chr12 55408028 55408247 -88874242 - MIR SINE MIR -12 250 28 300 288 0 0 chr12 55409074 55409140 -88873349 - MER91 DNA MER1_type 0 196 131 5281 232 50 23 chr12 55409140 55409201 -88873288 + L1ME2 LINE L1 3723 3781 -2383 1779 134 0 0 chr12 55409201 55409479 -88873010 + AluSc SINE Alu 38 315 0 5281 232 50 23 chr12 55409479 55411171 -88871318 + L1ME2 LINE L1 3781 5519 -645 369 275 124 32 chr12 55411173 55411391 -88871098 + L1ME2 LINE L1 5924 6161 -3 1403 230 81 55 chr12 55411647 55411932 -88870557 - L1M4 LINE L1 -1900 4246 3970 192 40 0 0 chr12 55411932 55411957 -88870532 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1403 230 81 55 chr12 55411957 55412222 -88870267 - L1M4 LINE L1 -2176 3970 3674 360 0 0 0 chr12 55412222 55412262 -88870227 + (TA)n Simple_repeat Simple_repeat 2 41 0 1403 230 81 55 chr12 55412262 55412380 -88870109 - L1M4 LINE L1 -2472 3674 3560 444 250 50 44 chr12 55412477 55412657 -88869832 - MIR SINE MIR 0 262 82 387 322 29 46 chr12 55412756 55412930 -88869559 + MER5A DNA MER1_type 1 171 -18 415 247 58 52 chr12 55413246 55413400 -88869089 - MIR3 SINE MIR -21 187 33 2154 105 3 0 chr12 55414084 55414379 -88868110 + AluSx SINE Alu 1 296 -16 291 333 0 6 chr12 55423071 55423248 -88859241 + (CCA)n Simple_repeat Simple_repeat 3 178 0 180 77 0 0 chr12 55423419 55423445 -88859044 + (TCC)n Simple_repeat Simple_repeat 2 27 0 331 310 103 0 chr12 55424530 55424646 -88857843 + MIR SINE MIR 19 146 -116 442 333 72 10 chr12 55424864 55425059 -88857430 + MIR SINE MIR 46 252 -10 248 255 142 0 chr12 55428819 55428925 -88853564 + MIR3 SINE MIR 34 154 -54 284 291 93 12 chr12 55429002 55429088 -88853401 + MIR3 SINE MIR 98 190 -18 278 109 0 0 chr12 55431874 55431920 -88850569 - MADE1 DNA Mariner -34 46 1 541 259 42 14 chr12 55431972 55432115 -88850374 + MIR SINE MIR 9 155 -107 1374 138 35 24 chr12 55432115 55432369 -88850120 - Tigger2 DNA MER2_type -1 2717 2461 4662 129 27 9 chr12 55432422 55433166 -88849323 - Tigger2 DNA MER2_type -1959 759 3 337 259 23 80 chr12 55433711 55433919 -88848570 - MIR3 SINE MIR -57 205 9 195 395 101 0 chr12 55434006 55434135 -88848354 - MIR3 SINE MIR -25 183 42 234 375 50 0 chr12 55435390 55435510 -88846979 - L2 LINE L2 -1 3271 3146 591 291 0 0 chr12 55435515 55435649 -88846840 + MER63A DNA MER1_type 77 210 0 185 405 23 46 chr12 55435681 55435854 -88846635 - L2 LINE L2 -212 3060 2892 423 107 0 0 chr12 55437431 55437487 -88845002 + AluSc SINE Alu 134 189 -120 217 320 131 11 chr12 55437852 55438027 -88844462 - L3 LINE CR1 -47 1530 1335 1477 185 7 24 chr12 55438095 55438476 -88844013 + AluJb SINE Alu 1 376 0 594 146 32 32 chr12 55438476 55438634 -88843855 + GA-rich Low_complexity Low_complexity 3 160 0 212 326 52 22 chr12 55438643 55438778 -88843711 - L3 LINE CR1 -375 1202 1064 248 309 79 29 chr12 55439569 55439708 -88842781 + L2 LINE L2 2013 2158 -1156 276 111 0 0 chr12 55439852 55439897 -88842592 + (CA)n Simple_repeat Simple_repeat 2 46 0 1245 259 64 27 chr12 55439973 55440268 -88842221 + MER20B DNA MER1_type 19 302 -481 205 26 53 26 chr12 55440268 55440306 -88842183 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1245 259 64 27 chr12 55440306 55440663 -88841826 + MER20B DNA MER1_type 302 767 -16 2167 117 0 0 chr12 55441457 55441757 -88840732 + AluSq SINE Alu 5 304 -9 188 273 0 0 chr12 55442347 55442391 -88840098 + L2 LINE L2 2211 2254 -1060 343 286 81 88 chr12 55442495 55442792 -88839697 + L2 LINE L2 2466 2760 -554 203 308 33 22 chr12 55443017 55443108 -88839381 + L2 LINE L2 2762 2853 -461 186 383 93 0 chr12 55443147 55443254 -88839235 + L2 LINE L2 2918 3034 -238 320 297 93 17 chr12 55443316 55443434 -88839055 + L2 LINE L2 3146 3272 0 205 326 11 11 chr12 55444255 55444344 -88838145 - MIR SINE MIR -108 154 66 2050 211 12 52 chr12 55444452 55444968 -88837521 - LTR42 LTR ERVL 0 495 1 291 54 0 0 chr12 55445231 55445268 -88837221 + (CAT)n Simple_repeat Simple_repeat 3 39 0 741 284 84 13 chr12 55445271 55445510 -88836979 - MIR SINE MIR -6 256 1 537 311 0 0 chr12 55446656 55446833 -88835656 + (CCG)n Simple_repeat Simple_repeat 2 178 0 213 366 0 0 chr12 55446810 55446922 -88835567 + (CCA)n Simple_repeat Simple_repeat 3 114 0 * 435 217 0 0 chr12 55451266 55451423 -88831066 + (CCA)n Simple_repeat Simple_repeat 3 159 0 192 135 0 0 chr12 55451497 55451534 -88830955 + (CCA)n Simple_repeat Simple_repeat 3 39 0 806 287 36 8 chr12 55452712 55452963 -88829526 - MIR SINE MIR -1 261 4 232 305 0 0 chr12 55453931 55453990 -88828499 + (TG)n Simple_repeat Simple_repeat 1 59 0 274 327 26 39 chr12 55454232 55454385 -88828104 - MIR SINE MIR -78 184 34 252 59 0 0 chr12 55454549 55454583 -88827906 + (A)n Simple_repeat Simple_repeat 1 34 0 319 320 105 0 chr12 55454902 55455055 -88827434 - MIR SINE MIR -72 190 22 270 262 48 12 chr12 55456231 55456315 -88826174 + MIR SINE MIR 65 151 -57 2267 80 0 7 chr12 55456382 55456671 -88825818 + AluY SINE Alu 14 300 -11 282 227 265 0 chr12 55458595 55458727 -88823762 - L3 LINE CR1 -75 1502 1336 250 346 88 6 chr12 55459111 55459270 -88823219 - L3 LINE CR1 -302 1275 1104 361 317 50 8 chr12 55460271 55460391 -88822098 + L2 LINE L2 3148 3272 0 696 126 0 0 chr12 55460565 55460668 -88821821 + AluJb SINE Alu 16 118 -194 204 106 21 43 chr12 55460671 55460718 -88821771 + (GAA)n Simple_repeat Simple_repeat 3 48 0 847 127 6 23 chr12 55460719 55460892 -88821597 + (GGA)n Simple_repeat Simple_repeat 2 171 0 219 69 0 0 chr12 55460897 55460926 -88821563 + (GAA)n Simple_repeat Simple_repeat 2 30 0 550 262 6 22 chr12 55462554 55462737 -88819752 + (CCG)n Simple_repeat Simple_repeat 1 180 0 1577 132 0 0 chr12 55465165 55465385 -88817104 + AluSg/x SINE Alu 85 304 -6 565 297 42 34 chr12 55465430 55465669 -88816820 + MIR SINE MIR 12 252 -10 465 163 0 0 chr12 55465670 55465750 -88816739 + MADE1 DNA Mariner 1 80 0 466 243 34 68 chr12 55466459 55466607 -88815882 + MIR SINE MIR 23 165 -97 401 315 65 43 chr12 55468376 55468455 -88814034 - MIR SINE MIR -1 261 185 752 215 87 0 chr12 55468455 55468627 -88813862 + MER5A DNA MER1_type 1 187 -2 401 315 65 43 chr12 55468627 55468779 -88813710 - MIR SINE MIR -77 185 25 213 184 0 0 chr12 55468857 55468895 -88813594 - MER91B DNA MER1_type -131 59 22 269 314 114 35 chr12 55470976 55471231 -88811258 + L2 LINE L2 2968 3242 -30 1032 281 103 21 chr12 55471503 55471880 -88810609 - L2 LINE L2 -18 3295 2888 647 211 123 6 chr12 55472071 55472242 -88810247 - L2 LINE L2 -498 2816 2626 300 54 0 0 chr12 55473385 55473422 -88809067 + U6 snRNA snRNA 1 37 -70 317 268 100 68 chr12 55473440 55473660 -88808829 + L2 LINE L2 3043 3269 -3 475 224 0 13 chr12 55473662 55473725 -88808764 + (TGGA)n Simple_repeat Simple_repeat 1 63 -91 246 62 0 0 chr12 55473725 55473757 -88808732 + (TG)n Simple_repeat Simple_repeat 2 33 0 475 224 0 13 chr12 55473757 55473849 -88808640 + (TGGA)n Simple_repeat Simple_repeat 63 154 0 336 24 0 0 chr12 55473847 55473888 -88808601 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 242 109 43 0 chr12 55473902 55473948 -88808541 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 743 224 62 55 chr12 55475573 55475863 -88806626 - MER5C DNA MER1_type -30 294 3 2032 130 0 26 chr12 55476194 55476501 -88805988 + AluJb SINE Alu 1 299 -13 1447 137 9 5 chr12 55476578 55476797 -88805692 - AluSg/x SINE Alu -3 309 90 523 279 122 12 chr12 55477928 55478100 -88804389 - MIR SINE MIR -57 205 15 714 239 35 25 chr12 55478108 55478305 -88804184 - MIR SINE MIR 0 262 64 489 318 0 19 chr12 55478322 55478476 -88804013 - MIR3 SINE MIR -37 171 21 460 301 37 62 chr12 55479376 55479698 -88802791 - L2 LINE L2 -101 3212 2899 180 310 58 23 chr12 55480657 55480744 -88801745 + L2 LINE L2 3222 3311 -2 236 283 143 10 chr12 55482648 55482751 -88799738 + MIR SINE MIR 37 150 -62 435 262 57 8 chr12 55485555 55485677 -88796812 + MIR SINE MIR 35 162 -100 198 256 23 0 chr12 55485690 55485733 -88796756 + L2 LINE L2 3219 3262 -10 1773 185 0 3 chr12 55486204 55486506 -88795983 - AluJb SINE Alu -11 301 1 199 253 165 13 chr12 55486593 55486672 -88795817 - MIR SINE MIR -116 146 56 461 198 17 43 chr12 55488463 55488579 -88793910 - L2 LINE L2 -5 3308 3196 295 263 12 0 chr12 55489764 55489844 -88792645 - MIR SINE MIR -70 138 58 828 165 120 6 chr12 55490063 55490221 -88792268 - AluJb SINE Alu -1 311 136 216 214 202 0 chr12 55490775 55490859 -88791630 - L2 LINE L2 0 3272 3172 2138 147 0 3 chr12 55491309 55491615 -88790874 + AluJb SINE Alu 2 306 -6 10860 22 2 171 chr12 55492127 55493791 -88788698 + SVA Other Other 1 1383 -3 195 129 0 0 chr12 55493801 55493832 -88788657 + (A)n Simple_repeat Simple_repeat 1 31 0 183 208 57 19 chr12 55494559 55494612 -88787877 + L2 LINE L2 3215 3269 -3 283 284 14 0 chr12 55495320 55495394 -88787095 - MIR SINE MIR -105 157 83 325 347 40 0 chr12 55495514 55495638 -88786851 - L3 LINE CR1 -23 1554 1426 453 320 75 14 chr12 55495778 55496059 -88786430 - L3 LINE CR1 -507 1070 773 224 332 209 11 chr12 55497333 55497482 -88785007 + L3b LINE CR1 1356 1551 -32 2475 100 0 0 chr12 55497482 55497793 -88784696 - AluSx SINE Alu -1 311 1 224 332 209 11 chr12 55497793 55497830 -88784659 + L3b LINE CR1 1551 1579 -4 254 114 91 0 chr12 55497890 55497934 -88784555 - MLT2A2 LTR ERVL -405 48 1 369 268 0 0 chr12 55499254 55499381 -88783108 + (TG)n Simple_repeat Simple_repeat 1 127 0 549 191 167 19 chr12 55500018 55500180 -88782309 + MER5A DNA MER1_type 1 186 -3 307 275 194 37 chr12 55500568 55500976 -88781513 + L2 LINE L2 2781 3253 -60 378 266 189 0 chr12 55501983 55502126 -88780363 + MIR SINE MIR 23 192 -70 210 71 0 0 chr12 55502529 55502557 -88779932 + (T)n Simple_repeat Simple_repeat 1 28 0 767 259 37 45 chr12 55503560 55503794 -88778695 - MIR SINE MIR -4 258 25 1085 166 14 33 chr12 55503794 55504005 -88778484 + MER3 DNA MER1_type 2 208 -1 203 214 0 29 chr12 55504087 55504157 -88778332 + A-rich Low_complexity Low_complexity 5 72 0 351 0 0 0 chr12 55504205 55504244 -88778245 + (TG)n Simple_repeat Simple_repeat 1 39 0 201 360 22 22 chr12 55505859 55505948 -88776541 - MIR SINE MIR -12 250 162 341 343 132 5 chr12 55505976 55506189 -88776300 - MIR SINE MIR -10 252 13 1020 211 62 36 chr12 55508449 55508753 -88773736 + MLT1C LTR MaLR 2 313 -154 575 160 88 24 chr12 55508868 55508993 -88773496 + MLT1C LTR MaLR 335 467 0 523 279 122 12 chr12 55510509 55510681 -88771808 - MIR SINE MIR -57 205 15 714 239 35 25 chr12 55510689 55510886 -88771603 - MIR SINE MIR 0 262 64 489 318 0 19 chr12 55510903 55511057 -88771432 - MIR3 SINE MIR -37 171 21 460 301 37 62 chr12 55511957 55512279 -88770210 - L2 LINE L2 -101 3212 2899 180 310 58 23 chr12 55513238 55513325 -88769164 + L2 LINE L2 3222 3311 -2 236 283 143 10 chr12 55515229 55515332 -88767157 + MIR SINE MIR 37 150 -62 435 262 57 8 chr12 55518140 55518262 -88764227 + MIR SINE MIR 35 162 -100 198 256 23 0 chr12 55518275 55518318 -88764171 + L2 LINE L2 3219 3262 -10 1773 185 0 3 chr12 55518789 55519091 -88763398 - AluJb SINE Alu -11 301 1 199 253 165 13 chr12 55519178 55519257 -88763232 - MIR SINE MIR -116 146 56 461 198 17 43 chr12 55521048 55521164 -88761325 - L2 LINE L2 -5 3308 3196 295 263 12 0 chr12 55522349 55522429 -88760060 - MIR SINE MIR -70 138 58 828 165 120 6 chr12 55522648 55522806 -88759683 - AluJb SINE Alu -1 311 136 216 214 202 0 chr12 55523359 55523443 -88759046 - L2 LINE L2 0 3272 3172 2138 147 0 3 chr12 55523893 55524199 -88758290 + AluJb SINE Alu 2 306 -6 347 195 171 0 chr12 55526562 55526644 -88755845 + MIR SINE MIR 54 149 -113 218 32 32 0 chr12 55526794 55526825 -88755664 + (CAA)n Simple_repeat Simple_repeat 2 33 0 243 161 0 54 chr12 55526906 55526962 -88755527 + L1M3c LINE L1 1356 1408 -6088 408 266 35 9 chr12 55526995 55527108 -88755381 + L1M3c LINE L1 2048 2163 -5402 1622 196 3 27 chr12 55527478 55527779 -88754710 + AluJb SINE Alu 7 300 -12 261 0 0 0 chr12 55528532 55528561 -88753928 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1581 183 11 8 chr12 55528600 55528862 -88753627 - AluJo SINE Alu -49 263 1 23 68 0 0 chr12 55528954 55528998 -88753491 + AT_rich Low_complexity Low_complexity 1 44 0 284 170 0 0 chr12 55529019 55529072 -88753417 - L1ME1 LINE L1 -6 6160 6108 2095 144 0 7 chr12 55529106 55529411 -88753078 - AluSx SINE Alu -9 303 1 2336 111 0 11 chr12 55531932 55532291 -88750198 - THE1A LTR MaLR 0 355 1 198 278 133 11 chr12 55532788 55532878 -88749611 - MIR SINE MIR -70 192 92 2208 112 10 3 chr12 55533653 55533949 -88748540 + AluSp SINE Alu 1 298 -15 316 197 16 0 chr12 55534396 55534457 -88748032 + MER81 DNA DNA 53 114 0 287 310 49 49 chr12 55534757 55534899 -88747590 + MIR SINE MIR 13 154 -108 1881 100 88 4 chr12 55534905 55535166 -88747323 + AluSx SINE Alu 4 286 -26 199 273 15 0 chr12 55536345 55536411 -88746078 + L3b LINE CR1 1316 1382 -201 614 223 78 6 chr12 55536501 55536667 -88745822 - MER5B DNA MER1_type 0 178 1 438 360 44 9 chr12 55536750 55536975 -88745514 - MIR SINE MIR -1 261 29 226 306 74 9 chr12 55537588 55537696 -88744793 - MIR3 SINE MIR -52 156 42 201 196 0 0 chr12 55538171 55538222 -88744267 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 382 77 0 0 chr12 55538241 55538293 -88744196 - AluSg/x SINE Alu -72 228 177 189 232 36 18 chr12 55538473 55538529 -88743960 - MIR SINE MIR -112 96 40 692 308 40 4 chr12 55538914 55539141 -88743348 + MIR SINE MIR 28 262 0 710 100 23 39 chr12 55539466 55539596 -88742893 - L1MA9 LINE L1 -271 6041 5914 984 124 96 39 chr12 55539605 55539783 -88742706 - AluSg/x SINE Alu -2 310 123 2121 144 8 16 chr12 55539786 55540160 -88742329 - L1MA9 LINE L1 -420 5892 5522 599 151 12 139 chr12 55540156 55540275 -88742214 + L1M2 LINE L1 5393 5487 -825 * 3425 55 0 0 chr12 55540275 55540709 -88741780 + L1PA5 LINE L1 5716 6153 -1 599 151 12 139 chr12 55540709 55540755 -88741734 + L1M2 LINE L1 5487 5537 -775 200 167 0 0 chr12 55541211 55541241 -88741248 + G-rich Low_complexity Low_complexity 3 32 0 844 186 0 0 chr12 55542006 55542167 -88740322 - FRAM SINE Alu -3 163 3 517 309 86 21 chr12 55544773 55545006 -88737483 - MIR SINE MIR 0 262 15 1053 121 22 82 chr12 55545273 55545505 -88736984 - MER20 DNA MER1_type -1 218 1 265 136 23 0 chr12 55547231 55547275 -88735214 - L2 LINE L2 -5 3267 3223 291 270 0 0 chr12 55547764 55547827 -88734662 - L2 LINE L2 -6 3266 3204 2064 145 0 0 chr12 55547951 55548241 -88734248 - AluJb SINE Alu -22 290 1 303 49 0 0 chr12 55551323 55551364 -88731125 + (CA)n Simple_repeat Simple_repeat 2 42 0 311 234 271 0 chr12 55551579 55551686 -88730803 + MIR3 SINE MIR 24 159 -49 1924 158 7 0 chr12 55552892 55553189 -88729300 - AluSx SINE Alu -13 299 1 480 282 94 8 chr12 55553638 55553823 -88728666 - MIR SINE MIR -20 242 29 301 332 65 59 chr12 55554925 55555247 -88727242 - L2 LINE L2 0 3272 2949 458 265 26 14 chr12 55555418 55555559 -88726930 + MER5B DNA MER1_type 19 168 -21 1253 62 0 0 chr12 55555809 55555969 -88726520 + L1PA4 LINE L1 5995 6154 -1 1112 219 27 38 chr12 55556017 55556382 -88726107 + L1ME2 LINE L1 5188 6155 -9 199 274 89 48 chr12 55556492 55556638 -88725851 + L2 LINE L2 3162 3313 0 27 49 0 0 chr12 55556726 55556767 -88725722 + AT_rich Low_complexity Low_complexity 1 41 0 851 247 113 43 chr12 55556866 55557558 -88724931 + L1ME1 LINE L1 4993 5727 -439 231 241 19 0 chr12 55562776 55562830 -88719659 + L2 LINE L2 3237 3291 -22 1405 143 99 0 chr12 55564934 55565207 -88717282 - MER52C LTR ERV1 -317 961 662 3141 29 5 0 chr12 55565207 55565590 -88716899 - L1P LINE L1 -1869 4277 3893 6248 24 1 1 chr12 55565590 55566304 -88716185 + L1PA4 LINE L1 5424 6142 -13 690 218 11 53 chr12 55566372 55566560 -88715929 + L1ME1 LINE L1 5932 6111 -55 245 273 8 70 chr12 55566449 55566566 -88715923 + L1MA10 LINE L1 6167 6277 -57 * 1845 179 11 0 chr12 55566566 55566851 -88715638 + AluJb SINE Alu 5 292 -20 2489 70 0 3 chr12 55566901 55567199 -88715290 - AluY SINE Alu -13 298 2 1151 207 120 50 chr12 55567220 55567737 -88714752 + L1MC5 LINE L1 7361 7913 -48 781 330 200 16 chr12 55567910 55568491 -88713998 + L3 LINE CR1 679 1366 -211 216 352 38 9 chr12 55568526 55568631 -88713858 + L3 LINE CR1 1459 1566 -11 187 286 26 13 chr12 55568680 55568757 -88713732 - MIR SINE MIR -3 259 182 634 247 30 24 chr12 55569686 55569852 -88712637 + MIR SINE MIR 3 169 -93 6613 144 40 16 chr12 55569862 55571083 -88711406 + MER52C LTR ERV1 29 1278 0 246 258 61 0 chr12 55571084 55571150 -88711339 + MIR SINE MIR 167 236 -26 1981 120 0 4 chr12 55571811 55572078 -88710411 + AluSg SINE Alu 1 266 -44 1028 81 12 12 chr12 55572098 55572270 -88710219 + (GAAA)n Simple_repeat Simple_repeat 3 174 0 1242 45 11 22 chr12 55572296 55572475 -88710014 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 199 299 90 0 chr12 55573440 55573507 -88708982 + L3b LINE CR1 1311 1383 -200 1723 183 10 7 chr12 55573764 55574054 -88708435 - AluJo SINE Alu -21 291 1 1933 145 3 23 chr12 55575670 55575973 -88706516 + AluSx SINE Alu 1 297 -15 182 301 36 48 chr12 55576079 55576162 -88706327 - MER5B DNA MER1_type -40 138 57 225 146 0 24 chr12 55576166 55576207 -88706282 + MER31B LTR ERV1 37 76 -390 2303 96 3 3 chr12 55580185 55580477 -88702012 - AluSc SINE Alu -17 292 1 491 266 114 13 chr12 55580836 55580994 -88701495 - MER5B DNA MER1_type -3 175 2 311 242 63 0 chr12 55583125 55583220 -88699269 + L2 LINE L2 3164 3264 -8 26 0 0 0 chr12 55583999 55584025 -88698464 + AT_rich Low_complexity Low_complexity 1 26 0 202 298 48 24 chr12 55584475 55584559 -88697930 - L2 LINE L2 -217 3055 2970 213 328 15 0 chr12 55585019 55585086 -88697403 + L3 LINE CR1 1509 1576 -1 458 276 48 0 chr12 55585455 55585560 -88696929 - L2 LINE L2 0 3272 3163 525 346 15 0 chr12 55586695 55586831 -88695658 + MER91A DNA MER1_type 4 141 -55 214 295 115 13 chr12 55586856 55586934 -88695555 + MER91A DNA MER1_type 86 171 -25 400 265 284 6 chr12 55587074 55587236 -88695253 + MIR SINE MIR 54 260 -2 479 222 108 54 chr12 55588375 55588560 -88693929 - LTR16A LTR ERVL 0 450 256 6725 124 20 20 chr12 55588868 55589940 -88692549 - MER11C LTR ERVK 0 1071 1 265 381 58 0 chr12 55590309 55590464 -88692025 - L3 LINE CR1 -374 1203 1040 570 309 143 22 chr12 55590703 55591198 -88691291 + L1ME4a LINE L1 5265 5819 -302 438 287 42 28 chr12 55594315 55594458 -88688031 + L2 LINE L2 3169 3313 0 394 286 165 40 chr12 55594474 55594698 -88687791 + L1ME4a LINE L1 5869 6120 -1 241 415 0 0 chr12 55597860 55597982 -88684507 + (CCG)n Simple_repeat Simple_repeat 1 125 -27 204 40 0 0 chr12 55597982 55598007 -88684482 + (CTG)n Simple_repeat Simple_repeat 3 27 0 241 415 0 0 chr12 55598007 55598036 -88684453 + (CCG)n Simple_repeat Simple_repeat 124 152 0 187 254 111 16 chr12 55598170 55598233 -88684256 + MIR SINE MIR 58 126 -136 2205 116 0 0 chr12 55598905 55599206 -88683283 - AluSq SINE Alu -8 305 5 869 266 94 73 chr12 55650499 55650935 -88631554 + MLT2B1 LTR ERVL 20 464 -56 523 27 27 0 chr12 55650939 55651012 -88631477 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 189 0 0 0 chr12 55651051 55651072 -88631417 + (TG)n Simple_repeat Simple_repeat 2 22 0 2539 174 25 14 chr12 55651072 55651625 -88630864 + L1MC1 LINE L1 5135 5693 -640 2297 139 111 5 chr12 55651625 55652012 -88630477 + MSTA LTR MaLR 1 428 0 2539 174 25 14 chr12 55652012 55652051 -88630438 + L1MC1 LINE L1 5693 5730 -603 704 82 10 10 chr12 55652053 55652151 -88630338 + MER4A LTR ERV1 1 98 -566 1883 145 8 41 chr12 55652151 55652505 -88629984 + MER4A LTR ERV1 261 664 0 1902 180 37 3 chr12 55652505 55652883 -88629606 + L1MC1 LINE L1 5729 6119 -214 1481 179 14 4 chr12 55652886 55653165 -88629324 + L1MC1 LINE L1 6039 6320 -13 2060 124 55 25 chr12 55653167 55653531 -88628958 + THE1C LTR MaLR 1 375 0 6553 132 70 7 chr12 55653531 55654558 -88627931 + THE1C-int LTR MaLR 1 1092 -488 325 149 28 103 chr12 55654559 55654666 -88627823 + L1MA7 LINE L1 6187 6285 -6 229 220 60 0 chr12 55654686 55654736 -88627753 - L1MC3 LINE L1 -1672 6113 6061 3076 262 27 33 chr12 55654812 55655108 -88627381 - L1M4 LINE L1 -1538 4608 4312 1681 204 0 3 chr12 55655108 55655433 -88627056 + AluJb SINE Alu 1 312 0 3076 262 27 33 chr12 55655433 55656382 -88626107 - L1M4 LINE L1 -1834 4312 3370 9975 142 15 6 chr12 55656405 55659105 -88623384 - L1MA5A LINE L1 0 6297 3574 2807 166 40 2 chr12 55659105 55659683 -88622806 + L1MA5A LINE L1 2995 3594 -2552 411 277 45 7 chr12 55660442 55660597 -88621892 - L1ME LINE L1 -383 5738 5578 1256 142 73 18 chr12 55663041 55663142 -88619347 - MER30 DNA MER1_type 0 230 136 2154 110 0 7 chr12 55663142 55663433 -88619056 - AluSg SINE Alu -12 298 10 1256 142 73 18 chr12 55663433 55663445 -88619044 - MER30 DNA MER1_type -94 136 126 189 0 0 0 chr12 55663445 55663466 -88619023 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1256 142 73 18 chr12 55663466 55663569 -88618920 - MER30 DNA MER1_type -104 126 1 777 172 0 0 chr12 55668794 55668916 -88613573 + MER58B DNA MER1_type 220 341 0 506 292 79 0 chr12 55668916 55669118 -88613371 + MIR SINE MIR 17 234 -28 24 0 0 0 chr12 55671156 55671180 -88611309 + AT_rich Low_complexity Low_complexity 1 24 0 1942 152 0 23 chr12 55671492 55671795 -88610694 + AluJo SINE Alu 2 297 -15 742 224 0 33 chr12 55673310 55673493 -88608996 - AluJo SINE Alu -13 299 123 1873 257 37 7 chr12 55673511 55674056 -88608433 - L1ME2 LINE L1 -9 6155 5595 1232 184 34 26 chr12 55674075 55674342 -88608147 - L1MC1 LINE L1 0 6613 6345 3262 80 26 0 chr12 55674352 55674778 -88607711 - LTR3b LTR ERVK 0 437 1 10499 223 50 28 chr12 55674780 55675257 -88607232 - L1MC1 LINE L1 -268 6345 5880 2347 89 0 0 chr12 55675257 55675548 -88606941 - AluSg SINE Alu -19 291 1 10499 223 50 28 chr12 55675548 55678217 -88604272 - L1MC1 LINE L1 -733 5880 3269 2267 108 7 0 chr12 55678217 55678512 -88603977 - AluSg SINE Alu -13 297 1 10499 223 50 28 chr12 55678512 55679524 -88602965 - L1MC1 LINE L1 -3344 3269 2280 840 209 166 33 chr12 55679524 55679735 -88602754 - MER8 DNA MER2_type 0 239 1 10499 223 50 28 chr12 55679735 55681592 -88600897 - L1MC1 LINE L1 -4333 2280 1 960 159 16 16 chr12 55682426 55682615 -88599874 - MER53 DNA DNA 0 189 1 610 237 112 9 chr12 55682763 55682987 -88599502 - L1M4 LINE L1 -3250 2896 2650 219 114 45 0 chr12 55683015 55683059 -88599430 + (TA)n Simple_repeat Simple_repeat 2 47 0 1233 277 48 14 chr12 55683107 55683552 -88598937 - L1ME2 LINE L1 -992 5154 4690 4789 88 6 9 chr12 55683552 55684208 -88598281 - L1PA10 LINE L1 -1 6167 5514 1233 277 48 14 chr12 55684208 55684246 -88598243 - L1ME2 LINE L1 -1456 4690 4655 745 197 0 26 chr12 55684246 55684398 -88598091 - MLT1A2 LTR MaLR 0 374 227 294 192 192 13 chr12 55684475 55684553 -88597936 - MLT1A2 LTR MaLR -273 92 1 1572 253 76 3 chr12 55684553 55685158 -88597331 - L1ME2 LINE L1 -1487 4659 4011 1167 220 110 33 chr12 55685242 55685531 -88596958 + LTR52 LTR ERVL 28 352 -69 428 0 19 0 chr12 55685531 55685583 -88596906 + (TG)n Simple_repeat Simple_repeat 1 53 0 1167 220 110 33 chr12 55685583 55685657 -88596832 + LTR52 LTR ERVL 352 419 -2 2807 195 26 101 chr12 55685660 55686230 -88596259 + LTR52-int LTR ERVL 5 511 -3045 2113 115 3 3 chr12 55686230 55686534 -88595955 + AluSp SINE Alu 1 304 -9 2807 195 26 101 chr12 55686534 55686685 -88595804 + LTR52-int LTR ERVL 511 672 -2884 4652 223 33 18 chr12 55686850 55688305 -88594184 + LTR52-int LTR ERVL 972 2511 -1045 203 385 0 0 chr12 55688954 55689071 -88593418 + (CCG)n Simple_repeat Simple_repeat 2 118 0 240 316 0 0 chr12 55693782 55693899 -88588590 + (CCA)n Simple_repeat Simple_repeat 1 117 0 271 85 0 3 chr12 55697322 55697363 -88585126 - MADE1 DNA Mariner -43 37 2 206 299 58 0 chr12 55698327 55698414 -88584075 + MIR SINE MIR 39 130 -132 246 297 0 0 chr12 55698837 55698901 -88583588 - MIR SINE MIR -6 256 193 658 234 156 9 chr12 55701003 55701221 -88581268 - MIR SINE MIR -3 259 10 473 300 85 45 chr12 55702041 55702264 -88580225 - MIR SINE MIR -16 246 15 1496 226 83 50 chr12 55703187 55703669 -88578820 + MLT1D LTR MaLR 1 498 -7 487 333 9 18 chr12 55705611 55705833 -88576656 - L3 LINE CR1 -128 1449 1230 372 261 19 25 chr12 55706030 55706187 -88576302 + MER113 DNA MER1_type? 2 157 -364 358 308 58 12 chr12 55707233 55707405 -88575084 + MIR SINE MIR 69 248 -14 487 221 58 16 chr12 55707595 55707779 -88574710 + MER115 DNA AcHobo 9 232 -461 489 216 14 79 chr12 55707856 55707995 -88574494 + MER115 DNA AcHobo 408 537 -156 434 235 0 73 chr12 55708529 55708665 -88573824 + MIR3 SINE MIR 68 193 -15 318 261 193 8 chr12 55708870 55708989 -88573500 - MIR3 SINE MIR -26 182 42 3347 217 29 32 chr12 55709286 55709688 -88572801 - MER63C DNA MER1_type -133 927 526 1201 216 101 7 chr12 55709688 55709984 -88572505 + MER33 DNA MER1_type 1 324 0 3347 217 29 32 chr12 55709984 55710365 -88572124 - MER63C DNA MER1_type -534 526 144 2382 70 0 0 chr12 55710365 55710664 -88571825 + AluY SINE Alu 1 299 -12 3347 217 29 32 chr12 55710664 55710764 -88571725 - MER63C DNA MER1_type -916 144 45 245 137 74 158 chr12 55710766 55710861 -88571628 - MER63C DNA MER1_type -843 87 1 223 171 0 0 chr12 55711905 55711946 -88570543 - MIR SINE MIR -4 258 218 270 81 0 0 chr12 55711979 55712016 -88570473 + (TTA)n Simple_repeat Simple_repeat 3 39 0 227 222 0 0 chr12 55712270 55712318 -88570171 - MIR SINE MIR -63 145 102 258 272 109 0 chr12 55715598 55715690 -88566799 + MIR SINE MIR 111 212 -50 358 312 0 0 chr12 55715732 55715841 -88566648 - MER117 DNA MER1_type -21 176 68 309 347 40 35 chr12 55715851 55716024 -88566465 - MER5B DNA MER1_type -3 175 2 267 103 0 0 chr12 55716566 55716605 -88565884 + (CA)n Simple_repeat Simple_repeat 2 40 0 507 276 112 6 chr12 55719232 55719402 -88563087 + MIR3 SINE MIR 15 202 -6 261 255 13 75 chr12 55720801 55720955 -88561534 - MIR SINE MIR -6 256 63 603 178 86 10 chr12 55720962 55721133 -88561356 + MIR3 SINE MIR 15 195 -67 492 224 88 0 chr12 55721288 55721413 -88561076 - L2 LINE L2 -2 3311 3176 185 261 14 14 chr12 55723335 55723404 -88559085 - L2 LINE L2 -204 3068 3000 342 345 76 10 chr12 55724167 55724364 -88558125 - MIR SINE MIR -39 223 14 516 284 70 30 chr12 55725784 55726019 -88556470 - MIR SINE MIR -1 261 17 216 200 0 0 chr12 55726383 55726428 -88556061 - L3b LINE CR1 -198 1385 1341 311 299 16 16 chr12 55728433 55728560 -88553929 + CT-rich Low_complexity Low_complexity 2 128 0 4707 149 15 19 chr12 55728769 55729283 -88553206 + LTR39 LTR ERV1 1 512 -271 1861 64 0 13 chr12 55729283 55729519 -88552970 + L1PA8A LINE L1 5899 6131 0 4707 149 15 19 chr12 55729519 55729783 -88552706 + LTR39 LTR ERV1 512 776 -7 275 307 13 0 chr12 55729812 55729887 -88552602 - L2 LINE L2 -1 3271 3196 329 234 217 27 chr12 55730509 55730693 -88551796 + MIR SINE MIR 34 252 -10 2003 111 0 17 chr12 55730911 55731223 -88551266 + AluSx SINE Alu 1 307 0 479 282 15 35 chr12 55733156 55733382 -88549107 + MIR SINE MIR 20 232 -30 * 938 236 14 69 chr12 55733356 55733551 -88548938 - MIR SINE MIR -1 261 84 2210 106 0 0 chr12 55733551 55733844 -88548645 - AluSx SINE Alu -18 294 2 938 236 14 69 chr12 55733844 55733923 -88548566 - MIR SINE MIR -178 84 2 189 0 0 0 chr12 55735160 55735181 -88547308 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 231 276 163 16 chr12 55735504 55735627 -88546862 - L2 LINE L2 0 3272 3132 4648 166 21 15 chr12 55736229 55736740 -88545749 - L1MB5 LINE L1 0 6174 5668 1407 165 15 102 chr12 55736740 55737074 -88545415 - AluJo SINE Alu -7 305 1 4648 166 21 15 chr12 55737074 55737886 -88544603 - L1MB5 LINE L1 -506 5668 4843 962 190 64 26 chr12 55738981 55739231 -88543258 + Tigger4(Zombi) DNA MER2_type 1 2731 0 270 346 134 0 chr12 55740028 55740207 -88542282 + MIR SINE MIR 60 262 0 234 310 115 0 chr12 55741170 55741257 -88541232 - L2 LINE L2 -13 3259 3163 306 342 33 60 chr12 55741630 55741814 -88540675 - MIR SINE MIR -58 204 26 443 304 43 0 chr12 55743400 55743538 -88538951 + MIR3 SINE MIR 43 186 -22 268 253 162 10 chr12 55745509 55745608 -88536881 - MIR SINE MIR -77 131 18 181 250 16 31 chr12 55746781 55746845 -88535644 - L3b LINE CR1 -198 1385 1323 221 360 124 6 chr12 55748236 55748397 -88534092 + L3 LINE CR1 1383 1562 -15 2204 134 0 0 chr12 55748696 55748994 -88533495 + AluSx SINE Alu 1 298 -14 404 279 259 5 chr12 55749776 55749973 -88532516 - MIR SINE MIR -10 252 6 198 326 104 22 chr12 55750919 55751054 -88531435 - L2 LINE L2 -5 3308 3163 207 77 26 51 chr12 55751817 55751834 -88530655 + (GAAA)n Simple_repeat Simple_repeat 2 18 -21 2319 108 3 0 chr12 55751834 55752140 -88530349 + AluSq SINE Alu 1 307 -6 207 77 26 51 chr12 55752140 55752161 -88530328 + (GAAA)n Simple_repeat Simple_repeat 18 39 0 353 256 0 44 chr12 55752660 55752750 -88529739 + MER81 DNA DNA 1 86 -28 588 224 154 0 chr12 55753430 55753586 -88528903 - MER91A DNA MER1_type -16 180 1 564 258 48 12 chr12 55755722 55755889 -88526600 - MIR SINE MIR -24 238 66 213 212 94 106 chr12 55756474 55756559 -88525930 + L2 LINE L2 3025 3108 -164 632 234 44 125 chr12 55757400 55757648 -88524841 + MIR SINE MIR 20 247 -15 215 256 195 0 chr12 55757682 55757764 -88524725 - MIR SINE MIR -158 104 7 280 282 73 16 chr12 55758140 55758264 -88524225 + MIR SINE MIR 23 153 -55 230 309 21 10 chr12 55758410 55758507 -88523982 - L2 LINE L2 -298 2974 2877 339 113 0 0 chr12 55758651 55758704 -88523785 + (CA)n Simple_repeat Simple_repeat 2 54 0 479 242 159 22 chr12 55758735 55758917 -88523572 + L2 LINE L2 3101 3307 -6 222 175 0 35 chr12 55760425 55760482 -88522007 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 1829 106 0 55 chr12 55762254 55762546 -88519943 + L1PA10 LINE L1 5889 6164 -4 29 0 0 25 chr12 55762546 55762572 -88519917 + AT_rich Low_complexity Low_complexity 1 27 -12 2089 111 3 14 chr12 55762572 55762860 -88519629 + AluSx SINE Alu 1 285 -27 29 0 0 25 chr12 55762860 55762873 -88519616 + AT_rich Low_complexity Low_complexity 27 39 0 189 0 0 0 chr12 55762873 55762894 -88519595 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 243 125 0 0 chr12 55763842 55763882 -88518607 + (TG)n Simple_repeat Simple_repeat 2 41 0 291 140 0 0 chr12 55765217 55765267 -88517222 + (CA)n Simple_repeat Simple_repeat 2 51 0 278 348 54 9 chr12 55766018 55766130 -88516359 + L2 LINE L2 3139 3255 -17 4799 228 82 55 chr12 55766901 55767486 -88515003 + Charlie2a DNA MER1_type 5 573 -2289 2167 163 9 44 chr12 55767486 55767921 -88514568 + L1MB3 LINE L1 5760 6179 -4 4799 228 82 55 chr12 55767921 55768051 -88514438 + Charlie2a DNA MER1_type 573 698 -2164 4512 61 14 3 chr12 55768051 55768622 -88513867 + L1PA5 LINE L1 5577 6153 -1 4799 228 82 55 chr12 55768622 55769874 -88512615 + Charlie2a DNA MER1_type 698 2026 -836 266 195 241 75 chr12 55769874 55770048 -88512441 - L2 LINE L2 -2 3311 3109 1744 264 87 37 chr12 55770051 55770399 -88512090 + Charlie2a DNA MER1_type 2025 2354 -508 1953 135 7 3 chr12 55770399 55770688 -88511801 - AluSx SINE Alu -2 310 21 1744 264 87 37 chr12 55770688 55771120 -88511369 + Charlie2a DNA MER1_type 2354 2844 -18 837 252 48 5 chr12 55771343 55771553 -88510936 - MIR SINE MIR -6 256 38 219 333 42 63 chr12 55771561 55771798 -88510691 - MIR SINE MIR 0 262 31 181 224 82 0 chr12 55771976 55772025 -88510464 + L2 LINE L2 3134 3186 -86 214 250 171 23 chr12 55773702 55773790 -88508699 + MIR SINE MIR 92 192 -70 2675 86 0 11 chr12 55774287 55774646 -88507843 + THE1A LTR MaLR 1 355 0 702 235 62 11 chr12 55774651 55774830 -88507659 - MIR SINE MIR -14 248 61 227 227 15 30 chr12 55777690 55777756 -88504733 + MER103 DNA DNA 29 93 -73 1640 172 35 0 chr12 55777763 55778053 -88504436 + L1MC1 LINE L1 6019 6318 -15 282 179 0 0 chr12 55778065 55778121 -88504368 + (TGGA)n Simple_repeat Simple_repeat 4 59 0 24 53 0 0 chr12 55778299 55778337 -88504152 + AT_rich Low_complexity Low_complexity 1 38 0 654 246 116 55 chr12 55778837 55779182 -88503307 + MLT1J2 LTR MaLR 70 435 -15 810 241 32 32 chr12 55779360 55779580 -88502909 - MIR SINE MIR -12 250 31 521 286 74 62 chr12 55779757 55780082 -88502407 + L2 LINE L2 2935 3263 -9 320 370 95 0 chr12 55780290 55780479 -88502010 - MIR SINE MIR -7 255 49 223 351 0 9 chr12 55780872 55780986 -88501503 + (CATA)n Simple_repeat Simple_repeat 1 113 0 234 185 71 75 chr12 55783481 55783550 -88498939 + MIR SINE MIR 69 143 -82 929 247 52 71 chr12 55783563 55783905 -88498584 + MER113 DNA MER1_type? 1 335 -186 2170 125 0 3 chr12 55783905 55784234 -88498255 - AluSx SINE Alu 0 312 1 929 247 52 71 chr12 55784234 55784329 -88498160 + MER113 DNA MER1_type? 335 430 -91 514 297 105 60 chr12 55785514 55785962 -88496527 + L2 LINE L2 2805 3272 0 327 306 37 0 chr12 55786625 55786733 -88495756 + MIR SINE MIR 30 141 -67 241 291 34 43 chr12 55788652 55788769 -88493720 + MIR3 SINE MIR 41 156 -52 290 262 79 79 chr12 55790732 55790896 -88491593 + L2 LINE L2 2624 2787 -527 183 308 147 13 chr12 55791000 55791156 -88491333 + L2 LINE L2 2937 3113 -159 1090 172 16 0 chr12 55791161 55791347 -88491142 - MER5A DNA MER1_type 0 189 1 208 300 50 12 chr12 55793176 55793256 -88489233 - MIR SINE MIR -68 194 112 246 276 0 0 chr12 55793410 55793468 -88489021 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 275 269 0 0 chr12 55793470 55793537 -88488952 - L2 LINE L2 0 3272 3206 2258 103 33 0 chr12 55793959 55794261 -88488228 - AluSp SINE Alu -1 312 1 234 191 0 0 chr12 55795135 55795182 -88487307 + GA-rich Low_complexity Low_complexity 2 48 0 2253 222 50 29 chr12 55795304 55796177 -88486312 + L1MD1 LINE L1 107 1320 -5220 23 0 0 0 chr12 55796177 55796200 -88486289 + AT_rich Low_complexity Low_complexity 1 23 0 5848 189 69 18 chr12 55796648 55798546 -88483943 + L1MD1 LINE L1 1307 3311 -3229 450 190 10 10 chr12 55798547 55798647 -88483842 - MLT1B LTR MaLR -290 100 1 3986 198 31 33 chr12 55798703 55799972 -88482517 + L1MD1 LINE L1 5242 6505 -131 747 206 169 0 chr12 55800023 55800212 -88482277 - MIR SINE MIR -30 232 12 196 336 45 9 chr12 55800218 55800328 -88482161 - MER5B DNA MER1_type -39 139 26 508 241 62 37 chr12 55800399 55800561 -88481928 - MLT1J LTR MaLR -343 168 3 523 248 9 0 chr12 55800663 55800776 -88481713 + MER81 DNA DNA 1 114 0 242 221 26 65 chr12 55800886 55800963 -88481526 - L2 LINE L2 -1 3312 3239 252 296 224 44 chr12 55800980 55801230 -88481259 + L2 LINE L2 2978 3272 0 204 222 0 0 chr12 55801761 55801797 -88480692 + (TG)n Simple_repeat Simple_repeat 1 36 0 200 237 44 111 chr12 55803314 55803449 -88479040 - MIR SINE MIR -118 144 19 2484 195 44 0 chr12 55805423 55805875 -88476614 + MER70A LTR ERVL 1 472 0 2016 128 3 0 chr12 55806812 55807109 -88475380 + AluSx SINE Alu 1 298 -14 315 305 152 0 chr12 55809002 55809153 -88473336 + L1ME4a LINE L1 5743 5916 -205 246 200 167 17 chr12 55809266 55809386 -88473103 + L1ME4a LINE L1 5978 6115 -6 2442 110 21 8 chr12 55809446 55809818 -88472671 + L1PB1 LINE L1 5771 6147 -4 315 259 152 9 chr12 55810275 55810387 -88472102 + MIR SINE MIR 36 163 -99 198 103 0 0 chr12 55810515 55810544 -88471945 + (CAG)n Simple_repeat Simple_repeat 1 29 0 693 292 27 9 chr12 55810551 55810770 -88471719 - MIR SINE MIR -12 250 28 324 273 0 0 chr12 55811597 55811663 -88470826 - MER91 DNA MER1_type 0 196 131 5333 235 46 19 chr12 55811663 55811724 -88470765 + L1ME2 LINE L1 3723 3781 -2383 1755 138 0 0 chr12 55811724 55812005 -88470484 + AluSc SINE Alu 38 318 0 5333 235 46 19 chr12 55812005 55813697 -88468792 + L1ME2 LINE L1 3781 5519 -645 369 275 124 32 chr12 55813699 55813917 -88468572 + L1ME2 LINE L1 5924 6161 -3 1389 231 80 55 chr12 55814168 55814457 -88468032 - L1M4 LINE L1 -1896 4250 3970 192 40 0 0 chr12 55814457 55814482 -88468007 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1389 231 80 55 chr12 55814482 55814747 -88467742 - L1M4 LINE L1 -2176 3970 3674 360 0 0 0 chr12 55814747 55814787 -88467702 + (TA)n Simple_repeat Simple_repeat 2 41 0 1389 231 80 55 chr12 55814787 55814905 -88467584 - L1M4 LINE L1 -2472 3674 3560 444 250 50 44 chr12 55815002 55815182 -88467307 - MIR SINE MIR 0 262 82 387 322 29 46 chr12 55815281 55815455 -88467034 + MER5A DNA MER1_type 1 171 -18 415 247 58 52 chr12 55815771 55815925 -88466564 - MIR3 SINE MIR -21 187 33 2154 105 3 0 chr12 55816609 55816904 -88465585 + AluSx SINE Alu 1 296 -16 183 184 0 0 chr12 55824470 55824508 -88457981 + (CA)n Simple_repeat Simple_repeat 1 38 0 2028 125 3 10 chr12 55824714 55825027 -88457462 - AluSx SINE Alu -1 311 1 438 217 43 60 chr12 55825088 55825272 -88457217 + L1MC5 LINE L1 7316 7496 -465 1990 122 0 7 chr12 55825322 55825625 -88456864 + AluSx SINE Alu 1 301 -11 315 255 82 61 chr12 55825816 55826047 -88456442 + L1MC5 LINE L1 7674 7909 -52 1954 123 13 13 chr12 55832368 55832669 -88449820 + AluSx SINE Alu 1 301 -11 3704 263 33 21 chr12 55833331 55834664 -88447825 + L1M4 LINE L1 3322 4670 -1476 254 200 60 0 chr12 55834687 55834737 -88447752 + L1MC3 LINE L1 6061 6113 -1672 2209 164 20 29 chr12 55834757 55835209 -88447280 - L1MA7 LINE L1 -3 6288 5841 5837 169 51 8 chr12 55835209 55836863 -88445626 - L1MC1 LINE L1 -13 6320 4600 1401 218 13 29 chr12 55836913 55837229 -88445260 + L1MC3 LINE L1 6097 6407 -1378 287 151 0 0 chr12 55837232 55837285 -88445204 - MLT2D LTR ERVL -4 516 464 243 188 0 0 chr12 55837285 55837333 -88445156 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 239 198 0 99 chr12 55837334 55837435 -88445054 - L1MC4 LINE L1 -1339 6703 6613 810 214 62 92 chr12 55837438 55837774 -88444715 - MLT2D LTR ERVL -48 366 41 2332 122 3 0 chr12 55837841 55838176 -88444313 - L1PB1 LINE L1 -9 6142 5807 2275 140 49 0 chr12 55838176 55838541 -88443948 - L1PBa LINE L1 -5480 1383 1001 945 214 0 0 chr12 55838547 55838734 -88443755 - L1PBa LINE L1 -6669 194 8 751 226 84 13 chr12 55838843 55839130 -88443359 + L1MC3 LINE L1 6404 6720 -1088 1209 207 34 90 chr12 55839147 55839504 -88442985 + MLT2D LTR ERVL 3 339 -75 317 306 27 7 chr12 55942303 55942450 -88340039 - MER103 DNA DNA -1 165 16 1107 116 0 0 chr12 55942993 55943148 -88339341 + AluSg/x SINE Alu 154 308 -4 198 0 0 0 chr12 55943149 55943171 -88339318 + (GGAGAA)n Simple_repeat Simple_repeat 4 25 0 1833 147 10 3 chr12 55943172 55943479 -88339010 + AluSx SINE Alu 1 309 -3 629 154 0 62 chr12 55943481 55943580 -88338909 + L1M4 LINE L1 4697 4788 -1358 2106 101 0 10 chr12 55943580 55943876 -88338613 + AluSp SINE Alu 1 293 -20 629 154 0 62 chr12 55943876 55943906 -88338583 + L1M4 LINE L1 4788 4818 -1328 301 113 0 0 chr12 55943940 55943993 -88338496 + AluSp/q SINE Alu 248 300 -3 1549 119 13 4 chr12 55943995 55944222 -88338267 + AluSq SINE Alu 1 229 -84 222 149 21 0 chr12 55944869 55944916 -88337573 + T-rich Low_complexity Low_complexity 2 49 0 188 314 139 35 chr12 55945967 55946053 -88336436 + MIR SINE MIR 1 95 -167 888 181 72 0 chr12 55946067 55946233 -88336256 + MER20 DNA MER1_type 40 217 -2 210 339 0 0 chr12 55946340 55946402 -88336087 - L2 LINE L2 -6 3307 3246 1593 124 4 4 chr12 55946791 55947025 -88335464 - AluSx SINE Alu -78 234 1 849 193 0 17 chr12 55947027 55947208 -88335281 - L1ME1 LINE L1 -262 5904 5727 719 116 0 128 chr12 55947208 55947372 -88335117 - FLAM_C SINE Alu 0 143 1 239 78 333 0 chr12 55947372 55947423 -88335066 - L1ME1 LINE L1 -436 5730 5663 1656 162 7 10 chr12 55947423 55947719 -88334770 - AluSx SINE Alu -1 311 17 1616 116 9 0 chr12 55947719 55947952 -88334537 - AluSx SINE Alu -77 235 1 418 167 219 26 chr12 55947954 55948068 -88334421 - L1ME1 LINE L1 -565 5601 5466 418 218 122 15 chr12 55948190 55948331 -88334158 + MIR SINE MIR 36 189 -67 377 272 0 0 chr12 55948990 55949082 -88333407 - L2 LINE L2 -8 3264 3173 241 265 53 61 chr12 55949556 55949688 -88332801 + L2 LINE L2 3183 3313 0 289 264 44 33 chr12 55949949 55950040 -88332449 - L3 LINE CR1 -5 1572 1481 1664 188 3 7 chr12 55950330 55950638 -88331851 + AluJb SINE Alu 1 307 -5 328 308 0 16 chr12 55952131 55952313 -88330176 + (TGG)n Simple_repeat Simple_repeat 2 180 0 1859 164 0 0 chr12 55954012 55954316 -88328173 + AluSx SINE Alu 1 304 -8 495 183 26 52 chr12 55954410 55954525 -88327964 + MER81 DNA DNA 1 112 -2 238 296 52 17 chr12 55955838 55955953 -88326536 - MIR3 SINE MIR -17 191 73 343 301 64 0 chr12 55957117 55957252 -88325237 + MIR3 SINE MIR 58 201 -7 428 346 98 20 chr12 55958098 55958393 -88324096 - L3 LINE CR1 -297 1280 963 1681 164 3 47 chr12 55958467 55958785 -88323704 - AluJo SINE Alu -3 309 6 2207 95 3 0 chr12 55959116 55959421 -88323068 + AluY SINE Alu 1 306 -5 291 313 82 63 chr12 55960077 55960345 -88322144 + L2 LINE L2 2828 3100 -172 250 364 41 8 chr12 55960436 55960557 -88321932 + L2 LINE L2 3143 3267 -5 244 312 73 92 chr12 55960830 55961144 -88321345 + L2 LINE L2 2997 3304 -9 * 261 325 79 0 chr12 55961119 55961233 -88321256 - L2 LINE L2 -3 3310 3188 679 123 16 0 chr12 55961245 55961367 -88321122 + (TGGA)n Simple_repeat Simple_repeat 4 127 0 2232 87 0 0 chr12 55962543 55962830 -88319659 - AluSc SINE Alu -22 287 1 492 266 188 5 chr12 55967599 55967817 -88314672 + MIR SINE MIR 2 259 -3 482 338 45 48 chr12 55967913 55968250 -88314239 - L2 LINE L2 -27 3245 2910 2046 101 10 29 chr12 55968394 55968702 -88313787 + AluSx SINE Alu 1 302 -10 1005 205 34 0 chr12 55968833 55969038 -88313451 - MER20 DNA MER1_type -5 214 3 450 0 0 0 chr12 55969917 55969967 -88312522 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 3651 19 0 0 chr12 55969993 55970404 -88312085 + L1PA3 LINE L1 5745 6155 0 1890 138 24 0 chr12 55970846 55971143 -88311346 + AluSx SINE Alu 1 304 -8 564 294 86 49 chr12 55971597 55972002 -88310487 + L2 LINE L2 2096 2515 -799 375 318 63 37 chr12 55972031 55972220 -88310269 + L2 LINE L2 3119 3312 -1 464 302 60 11 chr12 55972663 55972845 -88309644 + MIR3 SINE MIR 3 193 -15 284 221 15 15 chr12 55972995 55973063 -88309426 + MER103 DNA DNA 24 91 -75 193 313 71 36 chr12 55973461 55973573 -88308916 - L2 LINE L2 -578 2736 2621 345 340 0 0 chr12 55974108 55974267 -88308222 + (CCG)n Simple_repeat Simple_repeat 2 160 0 575 212 59 0 chr12 55976329 55976447 -88306042 + MIR SINE MIR 51 175 -87 665 252 258 16 chr12 55976964 55977064 -88305425 - LTR33 LTR ERVL -59 462 387 345 242 172 20 chr12 55977064 55977163 -88305326 + MER81 DNA DNA 1 114 0 665 252 258 16 chr12 55977163 55977431 -88305058 - LTR33 LTR ERVL -134 387 5 198 393 24 0 chr12 55977431 55977515 -88304974 + MIR SINE MIR 176 261 -1 191 347 66 30 chr12 55977895 55978062 -88304427 + L2 LINE L2 3086 3258 -14 257 256 45 90 chr12 55978372 55978505 -88303984 - MIR SINE MIR -124 138 12 202 218 55 0 chr12 55980925 55980980 -88301509 - MIR SINE MIR -64 144 87 512 255 9 0 chr12 55981449 55981582 -88300907 - MIR SINE MIR -63 145 12 388 186 10 11 chr12 55981939 55982038 -88300451 - L1MC4 LINE L1 0 8042 7902 1566 160 14 7 chr12 55982038 55982320 -88300169 - AluJo SINE Alu -2 310 27 470 213 85 28 chr12 55983102 55983243 -88299246 - L1MC5 LINE L1 -32 7929 7781 472 218 35 106 chr12 55983251 55983591 -88298898 - L1MC5 LINE L1 -141 7820 7505 1843 120 39 7 chr12 55984433 55984717 -88297772 - AluSq SINE Alu -20 293 1 400 162 0 14 chr12 55984717 55984791 -88297698 + FLAM_C SINE Alu 66 138 -5 1969 123 30 17 chr12 55986605 55986905 -88295584 - AluSx SINE Alu -8 304 1 496 199 114 15 chr12 55986974 55987105 -88295384 + MIR SINE MIR 69 212 -50 182 328 183 8 chr12 55987141 55987272 -88295217 + L2 LINE L2 3118 3271 -1 2344 84 0 0 chr12 55987289 55987586 -88294903 - AluSx SINE Alu -15 297 1 180 0 0 0 chr12 55988119 55988139 -88294350 + (TCTCTG)n Simple_repeat Simple_repeat 6 25 0 183 293 0 80 chr12 55988381 55988456 -88294033 - MER5B DNA MER1_type -101 77 9 854 153 15 0 chr12 55988584 55988715 -88293774 + FLAM_C SINE Alu 1 133 0 365 299 64 37 chr12 55988906 55989093 -88293396 - L3 LINE CR1 -4 1573 1382 2248 180 32 28 chr12 55989499 55989615 -88292874 - L1MB8 LINE L1 0 6178 6064 195 42 0 0 chr12 55989615 55989639 -88292850 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1581 161 7 31 chr12 55989639 55989930 -88292559 - AluJb SINE Alu -28 284 1 2248 180 32 28 chr12 55989930 55990285 -88292204 - L1MB8 LINE L1 -113 6065 5704 812 50 0 0 chr12 55990330 55990429 -88292060 + AluY SINE Alu 201 299 -12 204 40 0 0 chr12 55991641 55991666 -88290823 + (TG)n Simple_repeat Simple_repeat 1 25 0 2189 74 39 0 chr12 55992560 55992843 -88289646 - AluSg SINE Alu -16 294 1 348 83 0 0 chr12 55992893 55992941 -88289548 + (TG)n Simple_repeat Simple_repeat 1 48 0 231 114 0 0 chr12 55992944 55992979 -88289510 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 2162 105 3 0 chr12 55995045 55995340 -88287149 + AluSp SINE Alu 3 298 -15 324 297 79 0 chr12 55995345 55995446 -88287043 + L2 LINE L2 3201 3309 -4 688 121 26 60 chr12 55995487 55995603 -88286886 + FLAM_C SINE Alu 1 112 -31 292 251 156 36 chr12 55996507 55996617 -88285872 - MIR SINE MIR -55 207 69 1452 177 3 59 chr12 55996617 55996939 -88285550 + AluJo SINE Alu 6 309 -3 292 251 156 36 chr12 55996939 55996995 -88285494 - MIR SINE MIR -193 69 21 410 294 28 56 chr12 55997033 55997108 -88285381 - MIR SINE MIR -27 235 159 2152 123 0 0 chr12 55997108 55997410 -88285079 + AluSx SINE Alu 1 302 -10 410 294 28 56 chr12 55997410 55997548 -88284941 - MIR SINE MIR -103 159 28 615 259 12 18 chr12 55997956 55998126 -88284363 + MIR3 SINE MIR 1 169 -39 2211 71 4 0 chr12 55998127 55998434 -88284055 - AluY SINE Alu 0 309 2 181 250 0 19 chr12 55998482 55998534 -88283955 - L2 LINE L2 -2 3270 3220 293 282 107 19 chr12 55999646 55999749 -88282740 + L2 LINE L2 2683 2794 -520 188 298 0 0 chr12 55999892 55999939 -88282550 - L2 LINE L2 -3 3269 3223 394 340 113 9 chr12 56000080 56000292 -88282197 - MIR SINE MIR -5 257 24 351 0 0 0 chr12 56000386 56000425 -88282064 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1794 115 79 4 chr12 56001246 56001525 -88280964 + AluSq SINE Alu 1 300 -13 181 326 126 0 chr12 56001628 56001723 -88280766 - L2 LINE L2 -335 2978 2872 273 300 109 61 chr12 56001797 56002072 -88280417 + L2 LINE L2 1444 1753 -1561 2191 106 0 3 chr12 56002072 56002374 -88280115 + AluSq SINE Alu 1 301 -12 273 300 109 61 chr12 56002374 56002574 -88279915 + L2 LINE L2 1753 1942 -1372 1372 88 0 0 chr12 56002678 56002860 -88279629 - AluY SINE Alu -129 182 1 216 97 0 0 chr12 56002866 56002897 -88279592 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1837 139 0 46 chr12 56004130 56004453 -88278036 + AluJo SINE Alu 1 308 -4 347 245 147 10 chr12 56004509 56004611 -88277878 - MIR SINE MIR -107 155 40 202 182 221 0 chr12 56006064 56006141 -88276348 + MIR SINE MIR 137 230 -32 235 235 15 44 chr12 56008240 56008308 -88274181 + MIR SINE MIR 30 95 -113 526 333 18 6 chr12 56009259 56009427 -88273062 - MIR SINE MIR -34 228 59 200 229 16 16 chr12 56009503 56009564 -88272925 + (TG)n Simple_repeat Simple_repeat 2 62 0 26 0 0 0 chr12 56010093 56010119 -88272370 + GC_rich Low_complexity Low_complexity 1 26 0 38 22 0 0 chr12 56010172 56010217 -88272272 + GC_rich Low_complexity Low_complexity 1 45 0 532 279 93 31 chr12 56010930 56011156 -88271333 - MIR SINE MIR -3 259 20 1587 183 29 26 chr12 56012680 56012991 -88269498 - AluJo SINE Alu 0 312 1 300 27 0 0 chr12 56013138 56013175 -88269314 + (CA)n Simple_repeat Simple_repeat 2 38 0 1241 168 0 36 chr12 56014024 56014244 -88268245 + AluJb SINE Alu 84 295 -17 581 230 14 0 chr12 56014257 56014396 -88268093 + L1ME3A LINE L1 6022 6162 -8 325 331 169 25 chr12 56014685 56015087 -88267402 - L2 LINE L2 -1 3271 2812 189 257 14 40 chr12 56015157 56015231 -88267258 + MIR3 SINE MIR 1 72 -136 434 272 109 0 chr12 56015655 56015802 -88266687 + MER91A DNA MER1_type 31 193 -3 264 39 39 20 chr12 56016317 56016368 -88266121 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 1202 182 29 65 chr12 56016373 56016539 -88265950 - AluJo SINE Alu -12 300 130 270 0 0 0 chr12 56016539 56016569 -88265920 + (TG)n Simple_repeat Simple_repeat 2 31 0 1947 133 0 4 chr12 56016571 56016850 -88265639 - AluSx SINE Alu -34 278 1 1202 182 29 65 chr12 56016850 56016987 -88265502 - AluJo SINE Alu -183 129 5 1796 113 87 4 chr12 56016994 56017292 -88265197 - AluSx SINE Alu 0 312 6 684 114 9 9 chr12 56017513 56017660 -88264829 + FRAM SINE Alu 42 188 0 431 275 0 17 chr12 56017660 56017780 -88264709 + Charlie8 DNA MER1_type 104 221 -2196 256 290 30 0 chr12 56017832 56017932 -88264557 - MER115 DNA AcHobo -255 438 336 1540 113 0 35 chr12 56017956 56018013 -88264476 + AluSg/x SINE Alu 84 141 -171 2193 100 10 0 chr12 56018013 56018303 -88264186 + AluSg SINE Alu 1 293 -17 1540 113 0 35 chr12 56018303 56018474 -88264015 + AluSg/x SINE Alu 141 304 -8 1121 148 83 21 chr12 56018488 56018778 -88263711 - MER33 DNA MER1_type -16 308 1 1352 97 0 0 chr12 56019068 56019243 -88263246 + AluSx SINE Alu 1 175 -137 2154 101 3 3 chr12 56019346 56019644 -88262845 + AluSp SINE Alu 1 298 -15 726 249 50 33 chr12 56020337 56020578 -88261911 - MIR SINE MIR -16 246 2 217 305 65 23 chr12 56022309 56022453 -88260036 - MIR SINE MIR -41 221 76 202 306 107 33 chr12 56022461 56022637 -88259852 - MIR SINE MIR -46 216 36 446 325 68 6 chr12 56023598 56023761 -88258728 + MIR SINE MIR 25 197 -65 496 191 0 0 chr12 56024194 56024288 -88258201 - Charlie4 DNA MER1_type 0 1961 1868 285 256 68 110 chr12 56024322 56024418 -88258071 + MIR SINE MIR 32 120 -139 2000 142 38 49 chr12 56024418 56024784 -88257705 + THE1B LTR MaLR 3 364 0 285 256 68 110 chr12 56024784 56024834 -88257655 + MIR SINE MIR 120 171 -88 639 306 87 14 chr12 56025455 56025674 -88256815 - MIR SINE MIR -8 254 20 2146 54 38 60 chr12 56025689 56026005 -88256484 - AluY SINE Alu -2 309 1 517 331 12 0 chr12 56026855 56027018 -88255471 - MIR SINE MIR -79 183 19 276 330 54 9 chr12 56027432 56027544 -88254945 + L3b LINE CR1 1336 1452 -131 1854 141 21 3 chr12 56028503 56028787 -88253702 - AluJb SINE Alu -23 289 1 339 353 37 0 chr12 56028805 56028941 -88253548 + MIR3 SINE MIR 52 192 -16 1057 234 57 4 chr12 56028970 56029218 -88253271 + MIR SINE MIR 2 262 0 207 323 43 46 chr12 56029773 56029946 -88252543 + MIR SINE MIR 30 203 -59 654 210 6 56 chr12 56030117 56030279 -88252210 - MIR SINE MIR -108 154 1 220 242 30 15 chr12 56030339 56030405 -88252084 + MIR SINE MIR 69 135 -127 222 246 46 0 chr12 56032543 56032608 -88249881 - L3b LINE CR1 -192 1391 1324 332 229 24 12 chr12 56032806 56032889 -88249600 + MIR SINE MIR 61 144 -118 186 167 0 0 chr12 56033646 56033676 -88248813 + MIR SINE MIR 117 146 -62 189 254 104 0 chr12 56033773 56033838 -88248651 - MIR SINE MIR -33 229 158 286 247 47 47 chr12 56033838 56033923 -88248566 - MER91A DNA MER1_type 0 196 112 408 223 115 31 chr12 56034557 56034687 -88247802 - MIR SINE MIR -95 167 27 429 338 35 25 chr12 56034879 56035080 -88247409 + MIR SINE MIR 20 222 -40 285 122 0 0 chr12 56035394 56035435 -88247054 + AluJb SINE Alu 1 41 -260 1587 123 4 0 chr12 56035435 56035662 -88246827 + AluJb SINE Alu 74 301 -11 299 325 60 23 chr12 56036111 56036376 -88246113 + L2 LINE L2 2814 3088 -184 1143 308 245 45 chr12 56037090 56038307 -88244182 + L3 LINE CR1 115 1574 -3 592 301 140 0 chr12 56038498 56038727 -88243762 + MIR SINE MIR 2 262 0 2062 99 39 0 chr12 56038748 56039030 -88243459 + AluSq SINE Alu 1 293 -20 421 218 35 106 chr12 56039871 56040211 -88242278 + L1MC5 LINE L1 7505 7820 -141 426 246 72 7 chr12 56040222 56040360 -88242129 + L1MC5 LINE L1 7783 7929 -32 1593 167 11 3 chr12 56041142 56041424 -88241065 + AluJo SINE Alu 27 310 -2 366 186 10 11 chr12 56041424 56041523 -88240966 + L1MC4 LINE L1 7902 8042 0 523 272 15 10 chr12 56041880 56042048 -88240441 + MIR SINE MIR 12 145 -63 201 218 55 0 chr12 56042482 56042537 -88239952 + MIR SINE MIR 87 144 -64 270 256 45 90 chr12 56044956 56045089 -88237400 + MIR SINE MIR 12 138 -124 228 347 66 30 chr12 56045399 56045566 -88236923 - L2 LINE L2 -14 3258 3086 221 393 24 0 chr12 56045946 56046030 -88236459 - MIR SINE MIR -1 261 176 538 252 258 16 chr12 56046030 56046298 -88236191 + LTR33 LTR ERVL 5 207 -314 351 242 172 20 chr12 56046298 56046397 -88236092 - MER81 DNA DNA 0 114 1 538 252 258 16 chr12 56046397 56046497 -88235992 + LTR33 LTR ERVL 207 462 -59 581 212 59 0 chr12 56047014 56047132 -88235357 - MIR SINE MIR -87 175 51 1362 218 55 48 chr12 56049326 56049549 -88232940 + MLT1C LTR MaLR 6 226 -241 2045 136 0 19 chr12 56049549 56049858 -88232631 + AluSc SINE Alu 1 303 -6 1362 218 55 48 chr12 56049858 56050093 -88232396 + MLT1C LTR MaLR 226 467 0 2266 82 0 13 chr12 56050332 56050635 -88231854 + AluY SINE Alu 3 301 -10 222 228 59 0 chr12 56050769 56050837 -88231652 - MIR SINE MIR -90 172 100 352 321 31 25 chr12 56051031 56051190 -88231299 - MER5A DNA MER1_type -4 185 26 2071 127 19 3 chr12 56051764 56052071 -88230418 + AluSq SINE Alu 1 312 -1 744 133 0 0 chr12 56052092 56052212 -88230277 + (GGAA)n Simple_repeat Simple_repeat 4 123 0 2241 129 3 0 chr12 56052217 56052883 -88229606 + AluSx SINE Alu 1 311 -1 292 277 69 20 chr12 56053975 56054076 -88228413 + MIR3 SINE MIR 86 191 -17 979 255 71 74 chr12 56054083 56054136 -88228353 + L2 LINE L2 2789 2841 -472 2138 123 33 0 chr12 56054136 56054438 -88228051 - AluSx SINE Alu 0 312 1 979 255 71 74 chr12 56054438 56054806 -88227683 + L2 LINE L2 2841 3205 -108 2322 103 0 0 chr12 56054806 56055098 -88227391 + AluSg1 SINE Alu 1 292 -17 979 255 71 74 chr12 56055098 56055207 -88227282 + L2 LINE L2 3205 3313 0 272 271 42 31 chr12 56056253 56056349 -88226140 - MIR SINE MIR -92 116 20 261 253 87 28 chr12 56056409 56056553 -88225936 - MIR3 SINE MIR -68 140 10 215 264 75 94 chr12 56058291 56058450 -88224039 - L2 LINE L2 -86 3186 3031 2284 109 0 7 chr12 56058894 56059188 -88223301 + AluSx SINE Alu 1 292 -20 2140 107 7 0 chr12 56059215 56059520 -88222969 + AluY SINE Alu 1 307 0 287 280 21 11 chr12 56060483 56060576 -88221913 - MIR3 SINE MIR -11 197 104 250 257 0 0 chr12 56060731 56060805 -88221684 - L3 LINE CR1 -259 1318 1245 274 204 223 10 chr12 56060814 56060917 -88221572 + L2 LINE L2 3189 3313 0 1822 170 28 0 chr12 56061326 56061615 -88220874 - AluJb SINE Alu -14 298 2 186 317 106 16 chr12 56061689 56061812 -88220677 - L3 LINE CR1 -653 924 791 * 320 274 14 82 chr12 56061785 56061867 -88220622 - L2 LINE L2 0 3272 3203 2280 120 3 0 chr12 56061867 56062176 -88220313 + AluSx SINE Alu 1 310 -2 320 274 14 82 chr12 56062176 56062239 -88220250 - L2 LINE L2 -69 3203 3137 1079 257 72 37 chr12 56062327 56062728 -88219761 + L2 LINE L2 2899 3313 0 201 350 80 0 chr12 56062726 56062826 -88219663 - L3 LINE CR1 -762 815 708 * 217 315 46 46 chr12 56062900 56063030 -88219459 - L2 LINE L2 -21 3292 3163 334 296 37 19 chr12 56063182 56063290 -88219199 - L3 LINE CR1 -1049 528 419 1916 163 7 0 chr12 56063322 56063629 -88218860 + AluJo SINE Alu 3 311 -1 9699 66 8 14 chr12 56063632 56065752 -88216737 + L1PA6 LINE L1 4034 6150 -4 608 233 102 0 chr12 56065883 56066059 -88216430 - MIR SINE MIR -66 196 3 269 174 0 0 chr12 56066104 56066150 -88216339 - MIR SINE MIR -82 126 81 307 284 121 0 chr12 56066181 56066297 -88216192 - L2 LINE L2 -2 3311 3182 280 283 10 0 chr12 56066797 56066896 -88215593 + MER113 DNA MER1_type? 8 107 -414 2314 95 7 0 chr12 56067026 56067320 -88215169 + AluSp SINE Alu 1 296 -17 2201 70 52 11 chr12 56067320 56067606 -88214883 + AluSp SINE Alu 1 298 -15 2167 129 3 0 chr12 56068271 56068573 -88213916 + AluSx SINE Alu 1 303 -9 384 302 112 11 chr12 56068576 56068765 -88213724 - MIR SINE MIR -16 246 40 826 220 45 10 chr12 56068954 56069154 -88213335 + MER63A DNA MER1_type 1 207 -3 472 265 183 23 chr12 56069714 56069933 -88212556 - MER112 DNA MER1_type -2 254 1 196 279 81 12 chr12 56070360 56070446 -88212043 - L2 LINE L2 -41 3272 3181 2361 96 3 0 chr12 56070453 56070746 -88211743 + AluSg SINE Alu 1 294 -16 325 248 116 0 chr12 56070818 56070947 -88211542 - MIR3 SINE MIR -15 193 50 205 271 34 0 chr12 56071066 56071125 -88211364 - L2 LINE L2 -2 3270 3210 203 286 18 0 chr12 56071076 56071132 -88211357 - MIR SINE MIR -7 255 199 * 204 320 123 33 chr12 56071176 56071298 -88211191 - L3b LINE CR1 -130 1453 1321 1853 99 11 11 chr12 56071621 56071883 -88210606 - AluSp SINE Alu 0 313 52 557 223 0 0 chr12 56071984 56072087 -88210402 - AluJb SINE Alu -86 226 124 2397 76 13 0 chr12 56072133 56072437 -88210052 + AluSg SINE Alu 1 308 -2 700 125 0 0 chr12 56072612 56072716 -88209773 + AluJb SINE Alu 50 153 -159 238 167 0 0 chr12 56072716 56072752 -88209737 - Alu SINE Alu -265 36 1 209 290 14 14 chr12 56074211 56074280 -88208209 - L2 LINE L2 0 3272 3204 249 226 12 24 chr12 56077258 56077342 -88205147 + (CCCCG)n Simple_repeat Simple_repeat 2 84 0 2471 66 20 3 chr12 56077487 56077791 -88204698 + AluSc SINE Alu 1 309 0 324 202 11 43 chr12 56078308 56078402 -88204087 - L2 LINE L2 -8 3305 3215 768 127 0 70 chr12 56078429 56078571 -88203918 + FLAM_C SINE Alu 2 133 0 1529 113 15 0 chr12 56078580 56078807 -88203682 + AluSq SINE Alu 78 307 0 362 288 51 25 chr12 56079686 56079804 -88202685 + MIR SINE MIR 43 163 -99 192 254 0 48 chr12 56081166 56081229 -88201260 + L2 LINE L2 3213 3272 0 811 152 8 8 chr12 56081891 56082016 -88200473 + AluJo SINE Alu 11 135 -177 332 274 88 0 chr12 56082036 56082149 -88200340 + MIR SINE MIR 70 192 -70 212 254 34 17 chr12 56082548 56082607 -88199882 - MER91 DNA MER1_type 0 196 137 257 284 10 39 chr12 56082726 56082828 -88199661 + GA-rich Low_complexity Low_complexity 6 104 0 270 257 1 26 chr12 56083877 56083961 -88198528 + MIR SINE MIR 20 101 -107 351 239 97 18 chr12 56084296 56084409 -88198080 - L2 LINE L2 0 3313 3192 2592 78 3 0 chr12 56084489 56084798 -88197691 + AluSp SINE Alu 1 310 -3 244 280 53 53 chr12 56084872 56085004 -88197485 + L2 LINE L2 2239 2370 -944 306 0 0 0 chr12 56085253 56085287 -88197202 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2105 168 56 52 chr12 56085310 56085383 -88197106 - LTR24 LTR ERV1 0 467 396 1882 163 3 7 chr12 56085383 56085684 -88196805 + AluJb SINE Alu 1 300 -12 2105 168 56 52 chr12 56085684 56086075 -88196414 - LTR24 LTR ERV1 -71 396 1 2077 123 30 13 chr12 56086695 56086997 -88195492 + AluSq SINE Alu 1 307 -6 1955 106 84 4 chr12 56087624 56087898 -88194591 - AluSg SINE Alu -14 296 1 337 335 58 11 chr12 56088124 56088315 -88194174 - MIR SINE MIR -55 207 8 2246 132 0 0 chr12 56088431 56088741 -88193748 + AluSx SINE Alu 3 312 0 254 197 0 26 chr12 56088745 56088767 -88193722 + A-rich Low_complexity Low_complexity 2 23 -52 2385 109 0 0 chr12 56088767 56089078 -88193411 + AluY SINE Alu 1 311 0 254 197 0 26 chr12 56089078 56089131 -88193358 + A-rich Low_complexity Low_complexity 23 75 0 330 274 101 24 chr12 56089237 56089405 -88193084 - MIR3 SINE MIR -26 182 2 1228 244 72 68 chr12 56089448 56089753 -88192736 - MLT1J LTR MaLR -8 503 194 2389 74 7 14 chr12 56089753 56090050 -88192439 - AluSp SINE Alu -18 295 1 1228 244 72 68 chr12 56090050 56090231 -88192258 - MLT1J LTR MaLR -317 194 15 182 306 83 0 chr12 56090306 56090378 -88192111 + L2 LINE L2 3235 3312 -1 2246 115 7 0 chr12 56090770 56091065 -88191424 + AluSc SINE Alu 1 297 -12 2200 129 0 0 chr12 56091089 56091383 -88191106 + AluSg SINE Alu 1 294 -16 504 243 7 49 chr12 56091416 56091560 -88190929 - L2 LINE L2 -5 3308 3171 265 321 127 0 chr12 56091773 56091985 -88190504 - L2 LINE L2 -340 2974 2736 2203 53 0 27 chr12 56091986 56092285 -88190204 + L1PA5 LINE L1 5864 6154 0 22 0 0 0 chr12 56092292 56092314 -88190175 + AT_rich Low_complexity Low_complexity 1 22 0 966 144 105 0 chr12 56092371 56092552 -88189937 + L1MC1 LINE L1 6023 6222 -111 2311 110 0 0 chr12 56092723 56093015 -88189474 - AluSg SINE Alu -18 292 1 337 273 231 51 chr12 56093448 56093664 -88188825 + L3 LINE CR1 1276 1530 -47 2310 111 3 3 chr12 56093672 56093979 -88188510 - AluSp SINE Alu -1 312 6 559 207 12 11 chr12 56093981 56093994 -88188495 - L1MC/D LINE L1 -515 5606 5595 2251 97 0 35 chr12 56093994 56094305 -88188184 - AluSg SINE Alu -4 306 7 559 207 12 11 chr12 56094305 56094419 -88188070 - L1MC/D LINE L1 -526 5595 5494 1507 223 0 0 chr12 56094419 56094711 -88187778 - AluJo SINE Alu -10 302 11 559 207 12 11 chr12 56094711 56094738 -88187751 - L1MC/D LINE L1 -627 5494 5469 2609 41 0 0 chr12 56094760 56095052 -88187437 - AluY SINE Alu -19 292 1 22 35 0 0 chr12 56095061 56095090 -88187399 + AT_rich Low_complexity Low_complexity 1 29 0 755 293 22 0 chr12 56095894 56096116 -88186373 + MIR SINE MIR 36 262 0 367 209 116 0 chr12 56096414 56096500 -88185989 + MIR SINE MIR 49 144 -64 291 79 0 0 chr12 56096560 56096598 -88185891 + Alu SINE Alu 1 38 -270 1314 120 0 0 chr12 56096599 56096774 -88185715 + AluSg/x SINE Alu 129 303 -9 905 200 39 63 chr12 56096776 56097031 -88185458 + L1ME1 LINE L1 5606 5854 -312 1780 137 11 4 chr12 56097031 56097308 -88185181 - AluSx SINE Alu -4 308 30 2309 114 0 0 chr12 56097322 56097620 -88184869 - AluSg SINE Alu -12 298 1 2384 109 0 10 chr12 56097622 56097935 -88184554 - AluSg SINE Alu 0 310 1 216 0 0 0 chr12 56097935 56097959 -88184530 + (T)n Simple_repeat Simple_repeat 1 24 0 1249 185 4 4 chr12 56098623 56098855 -88183634 + MIR SINE MIR 28 259 -3 2329 98 0 17 chr12 56098855 56099151 -88183338 + AluSq SINE Alu 1 291 -22 2200 119 10 3 chr12 56099229 56099539 -88182950 + AluSq SINE Alu 1 312 -1 204 230 58 69 chr12 56099653 56099740 -88182749 - L2 LINE L2 -1018 2296 2211 1769 128 128 18 chr12 56099773 56100054 -88182435 + AluSx SINE Alu 1 312 0 508 234 28 101 chr12 56100433 56100529 -88181960 + L2 LINE L2 2971 3072 -241 2362 98 3 3 chr12 56100529 56100835 -88181654 + AluSp SINE Alu 1 306 -7 508 234 28 101 chr12 56100835 56100859 -88181630 + L2 LINE L2 3072 3096 -217 1574 163 78 123 chr12 56100859 56101310 -88181179 + MLT1D LTR MaLR 1 471 -34 282 29 0 0 chr12 56101310 56101345 -88181144 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2302 59 0 4 chr12 56101349 56101620 -88180869 - AluY SINE Alu -36 275 6 1574 163 78 123 chr12 56101620 56101692 -88180797 + MLT1D LTR MaLR 474 505 0 508 234 28 101 chr12 56101692 56101856 -88180633 + L2 LINE L2 3096 3235 -78 1938 105 0 30 chr12 56101957 56102224 -88180265 - AluSq SINE Alu -54 259 1 218 280 76 17 chr12 56102226 56102344 -88180145 + L2 LINE L2 1991 2115 -1199 183 327 43 49 chr12 56102559 56102721 -88179768 + L2 LINE L2 2225 2385 -929 390 265 60 17 chr12 56102774 56102891 -88179598 + MIR SINE MIR 141 262 0 2207 96 17 27 chr12 56102948 56103249 -88179240 - AluSp SINE Alu -15 298 1 2056 164 3 0 chr12 56103277 56103588 -88178901 - AluJo SINE Alu 0 312 1 2495 77 0 0 chr12 56103797 56104095 -88178394 - AluY SINE Alu -13 298 1 274 311 113 40 chr12 56104124 56104275 -88178214 - MER5A DNA MER1_type -13 165 4 198 0 0 0 chr12 56104386 56104408 -88178081 + (TA)n Simple_repeat Simple_repeat 2 23 0 2258 109 0 0 chr12 56104408 56104693 -88177796 - AluSq SINE Alu -28 285 1 662 159 0 0 chr12 56104700 56104807 -88177682 - AluJb SINE Alu -185 127 21 2307 98 17 0 chr12 56104820 56105116 -88177373 - AluSg SINE Alu -8 302 2 232 338 0 0 chr12 56105118 56105198 -88177291 + L1M4 LINE L1 4030 4109 -2037 848 170 0 0 chr12 56105236 56105389 -88177100 + L1M4 LINE L1 4091 4243 -1903 372 152 5 8 chr12 56105378 56105457 -88177032 + FRAM/FAM SINE Alu 16 69 -97 * 703 113 0 0 chr12 56105457 56105554 -88176935 - AluS SINE Alu -210 102 6 1361 233 17 3 chr12 56105564 56105925 -88176564 + L1M4 LINE L1 4323 4688 -1458 2434 105 0 0 chr12 56105925 56106238 -88176251 - AluSq SINE Alu 0 313 1 558 192 0 0 chr12 56106238 56106337 -88176152 - L1M4 LINE L1 -1351 4795 4697 1979 148 10 3 chr12 56106339 56106644 -88175845 - AluSx SINE Alu -3 309 3 204 40 0 0 chr12 56106644 56106669 -88175820 + (TTCTCC)n Simple_repeat Simple_repeat 4 28 0 790 203 12 107 chr12 56106792 56106897 -88175592 + L1ME1 LINE L1 5941 6012 -154 2245 103 0 7 chr12 56106897 56107197 -88175292 - AluSg SINE Alu -12 298 1 790 203 12 107 chr12 56107197 56107333 -88175156 + L1ME1 LINE L1 6012 6159 -7 2385 90 0 7 chr12 56107339 56107640 -88174849 - AluSp SINE Alu -14 299 1 972 200 48 7 chr12 56107644 56107914 -88174575 + L1M4 LINE L1 5086 5366 -780 2011 138 3 10 chr12 56107914 56108212 -88174277 + AluSx SINE Alu 1 296 -16 2047 156 0 0 chr12 56108231 56108539 -88173950 + AluSx SINE Alu 1 308 -4 1622 114 5 14 chr12 56108541 56108761 -88173728 + AluSx SINE Alu 1 218 -94 2102 104 4 7 chr12 56108873 56109192 -88173297 + AluSx SINE Alu 6 323 0 2199 125 0 16 chr12 56109248 56109559 -88172930 + AluSx SINE Alu 1 306 -6 1233 96 0 0 chr12 56110558 56110736 -88171753 + (TTC)n Simple_repeat Simple_repeat 3 180 0 985 152 7 7 chr12 56110755 56111087 -88171402 - AluSg/x SINE Alu 0 463 132 2342 119 0 3 chr12 56111087 56111397 -88171092 - AluSx SINE Alu -3 309 1 2174 110 9 38 chr12 56111397 56111715 -88170774 - AluSq SINE Alu -4 309 1 276 367 98 8 chr12 56111719 56111975 -88170514 - L3 LINE CR1 -165 1412 1134 202 269 178 36 chr12 56112437 56112656 -88169833 + L2 LINE L2 2481 2730 -584 779 243 68 46 chr12 56113042 56113078 -88169411 + MLT1K LTR MaLR 2 36 -552 2169 125 0 22 chr12 56113078 56113397 -88169092 - AluSx SINE Alu 0 312 1 779 243 68 46 chr12 56113397 56113435 -88169054 + MLT1K LTR MaLR 36 72 -516 2470 64 0 3 chr12 56113435 56113731 -88168758 - AluY SINE Alu -16 295 1 779 243 68 46 chr12 56113731 56114171 -88168318 + MLT1K LTR MaLR 72 571 -17 582 119 0 169 chr12 56114184 56114269 -88168220 + AluJo/FLAM SINE Alu 1 99 -203 2202 111 7 7 chr12 56114269 56114566 -88167923 - AluSp SINE Alu -14 299 3 2194 131 0 6 chr12 56114570 56114884 -88167605 - AluSx SINE Alu 0 312 1 582 119 0 169 chr12 56114884 56114953 -88167536 + AluJo/FLAM SINE Alu 102 133 -169 2123 120 30 17 chr12 56116772 56117072 -88165417 - AluSx SINE Alu -8 304 1 497 191 114 15 chr12 56117141 56117272 -88165217 + MIR SINE MIR 69 212 -50 2485 84 0 0 chr12 56117456 56117753 -88164736 - AluSx SINE Alu -15 297 1 180 0 0 0 chr12 56118286 56118306 -88164183 + (TCTCTG)n Simple_repeat Simple_repeat 6 25 0 181 293 0 80 chr12 56118548 56118623 -88163866 - MER5B DNA MER1_type -101 77 9 786 160 15 0 chr12 56118752 56118883 -88163606 + FLAM_C SINE Alu 1 133 0 344 299 64 37 chr12 56119074 56119261 -88163228 - L3 LINE CR1 -4 1573 1382 1995 180 32 28 chr12 56119667 56119783 -88162706 - L1MB8 LINE L1 0 6178 6064 195 42 0 0 chr12 56119783 56119807 -88162682 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1699 161 7 31 chr12 56119807 56120098 -88162391 - AluJb SINE Alu -28 284 1 1995 180 32 28 chr12 56120098 56120453 -88162036 - L1MB8 LINE L1 -113 6065 5704 858 50 0 0 chr12 56120498 56120597 -88161892 + AluY SINE Alu 201 299 -12 204 40 0 0 chr12 56121810 56121835 -88160654 + (TG)n Simple_repeat Simple_repeat 1 25 0 2327 71 39 0 chr12 56122731 56123012 -88159477 - AluSg SINE Alu -18 292 1 243 88 0 0 chr12 56123062 56123096 -88159393 + (TG)n Simple_repeat Simple_repeat 1 34 0 231 114 0 0 chr12 56123099 56123134 -88159355 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 336 24 0 0 chr12 56124924 56124965 -88157524 + (GGGTG)n Simple_repeat Simple_repeat 5 45 0 26 0 0 0 chr12 56125218 56125244 -88157245 + GC_rich Low_complexity Low_complexity 1 26 0 291 234 184 50 chr12 56125426 56125627 -88156862 + MIR SINE MIR 5 232 -30 21 0 0 0 chr12 56125655 56125676 -88156813 + AT_rich Low_complexity Low_complexity 1 21 0 2241 100 0 0 chr12 56125783 56126064 -88156425 - AluSx SINE Alu -15 297 17 1965 82 27 41 chr12 56126176 56126468 -88156021 + AluY SINE Alu 1 288 -23 439 260 16 31 chr12 56127116 56127243 -88155246 - MER94 DNA DNA 0 134 10 356 254 134 8 chr12 56128474 56128608 -88153881 - MIR SINE MIR -110 152 2 2448 69 3 7 chr12 56129529 56129832 -88152657 - AluY SINE Alu -9 302 1 288 218 232 56 chr12 56130621 56130666 -88151823 - MIR SINE MIR -29 233 197 2011 102 68 17 chr12 56130666 56130961 -88151528 - AluSg SINE Alu 0 310 1 288 218 232 56 chr12 56130961 56131057 -88151432 - MIR SINE MIR -65 197 67 206 333 0 0 chr12 56131278 56131338 -88151151 + (CCCCAG)n Simple_repeat Simple_repeat 5 64 0 230 293 122 0 chr12 56132051 56132133 -88150356 - MIR SINE MIR -123 139 48 1236 112 0 6 chr12 56132234 56132404 -88150085 + AluY SINE Alu 135 303 -8 269 310 40 0 chr12 56132404 56132504 -88149985 - L1MC/D LINE L1 -1942 5866 5763 2162 123 13 3 chr12 56132538 56132840 -88149649 - AluSx SINE Alu -7 305 1 2233 104 7 10 chr12 56132847 56133155 -88149334 - AluSg SINE Alu -3 307 1 311 293 25 55 chr12 56133367 56133540 -88148949 - MIR SINE MIR -72 190 20 637 171 38 38 chr12 56133567 56133725 -88148764 - MER5B DNA MER1_type -17 161 4 234 0 0 0 chr12 56133791 56133817 -88148672 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2231 83 0 0 chr12 56133821 56134087 -88148402 - AluSg SINE Alu -44 266 1 2281 103 6 10 chr12 56134583 56134895 -88147594 - AluY SINE Alu 0 311 1 288 218 232 56 chr12 56135684 56135729 -88146760 - MIR SINE MIR -29 233 197 2011 102 68 17 chr12 56135729 56136024 -88146465 - AluSg SINE Alu 0 310 1 288 218 232 56 chr12 56136024 56136120 -88146369 - MIR SINE MIR -65 197 67 206 333 0 0 chr12 56136341 56136401 -88146088 + (CCCCAG)n Simple_repeat Simple_repeat 5 64 0 289 326 89 11 chr12 56137114 56137239 -88145250 - MIR SINE MIR -68 140 9 275 202 48 48 chr12 56138125 56138229 -88144260 + MER112 DNA MER1_type 18 121 -139 1975 88 84 0 chr12 56138854 56139276 -88143213 - AluY SINE Alu 0 444 1 2272 100 0 10 chr12 56139276 56139576 -88142913 - AluSq SINE Alu -15 298 1 2194 131 0 0 chr12 56139576 56139866 -88142623 - AluSx SINE Alu -22 290 1 2297 122 0 0 chr12 56139903 56140198 -88142291 - AluSx SINE Alu -17 295 1 1952 79 111 29 chr12 56140241 56140520 -88141969 - AluY SINE Alu -9 302 1 518 255 97 20 chr12 56140652 56140848 -88141641 - L1MC4a LINE L1 -1849 5959 5749 236 263 18 0 chr12 56140880 56140937 -88141552 - L1MC4a LINE L1 -2165 5643 5586 2441 73 30 0 chr12 56141773 56142076 -88140413 - AluSp SINE Alu 0 313 2 2257 115 3 10 chr12 56142229 56142543 -88139946 - AluSp SINE Alu -1 312 1 26 30 0 0 chr12 56142548 56142581 -88139908 + AT_rich Low_complexity Low_complexity 1 33 0 308 269 43 86 chr12 56142581 56142736 -88139753 - L1MEc LINE L1 -4543 1853 1706 1969 142 13 3 chr12 56142736 56143039 -88139450 - AluSx SINE Alu -6 306 1 308 269 43 86 chr12 56143039 56143069 -88139420 - L1MEc LINE L1 -4690 1706 1676 2145 127 7 7 chr12 56143189 56143489 -88139000 + AluSx SINE Alu 1 300 -12 484 319 25 12 chr12 56143524 56143687 -88138802 - L1ME4a LINE L1 -2 6119 5955 473 204 11 0 chr12 56143694 56143782 -88138707 - L2 LINE L2 0 3313 3225 1695 163 3 26 chr12 56143787 56144093 -88138396 + AluJo SINE Alu 2 300 -12 2350 91 3 3 chr12 56144100 56144396 -88138093 + AluSg SINE Alu 1 296 -14 1495 180 38 16 chr12 56144396 56144712 -88137777 - Tigger3(Golem) DNA MER2_type -2704 325 3 1699 108 0 0 chr12 56144789 56145003 -88137486 + AluSq SINE Alu 1 214 -99 407 185 54 29 chr12 56145128 56145168 -88137321 - L1M4 LINE L1 -869 5277 5239 2252 109 0 13 chr12 56145168 56145479 -88137010 - AluSg SINE Alu -3 307 1 407 185 54 29 chr12 56145479 56145640 -88136849 - L1M4 LINE L1 -907 5239 4974 881 205 6 0 chr12 56145644 56145805 -88136684 + FRAM SINE Alu 1 162 -14 267 255 20 10 chr12 56145805 56145903 -88136586 - L1M4 LINE L1 -1008 5138 5040 1023 106 0 0 chr12 56145908 56146040 -88136449 - AluY SINE Alu -179 132 1 2335 110 10 3 chr12 56146048 56146358 -88136131 - AluSx SINE Alu 0 312 1 284 113 0 0 chr12 56146360 56146413 -88136076 - AluSp/q SINE Alu -3 300 248 2467 82 0 0 chr12 56146477 56146770 -88135719 - AluSp SINE Alu -20 293 1 464 292 23 79 chr12 56146897 56146970 -88135519 - MIR SINE MIR -47 215 139 2426 90 3 0 chr12 56146970 56147270 -88135219 - AluSp SINE Alu -10 303 3 2209 124 0 0 chr12 56147271 56147569 -88134920 - AluSx SINE Alu -14 298 1 464 292 23 79 chr12 56147569 56147709 -88134780 - MIR SINE MIR -122 140 12 227 200 0 0 chr12 56148219 56148264 -88134225 + (TG)n Simple_repeat Simple_repeat 1 45 0 528 128 0 0 chr12 56148559 56148637 -88133852 - AluS SINE Alu -233 79 2 25 31 0 0 chr12 56148638 56148670 -88133819 + AT_rich Low_complexity Low_complexity 1 32 0 258 314 35 0 chr12 56148722 56148808 -88133681 + L2 LINE L2 3148 3236 -36 33 66 0 0 chr12 56148840 56148901 -88133588 + AT_rich Low_complexity Low_complexity 1 61 0 253 271 0 0 chr12 56148901 56148960 -88133529 + MER63 DNA MER1_type 684 742 -320 180 219 0 0 chr12 56149020 56149061 -88133428 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 2278 109 0 29 chr12 56149262 56149575 -88132914 - AluSx SINE Alu -8 304 1 181 300 0 0 chr12 56150113 56150163 -88132326 + L2 LINE L2 3246 3295 -18 951 212 62 46 chr12 56150760 56150856 -88131633 + MER46C DNA MER2_type 9 102 -236 2535 79 3 0 chr12 56150856 56151159 -88131330 - AluSp SINE Alu -9 304 1 951 212 62 46 chr12 56151159 56151387 -88131102 + MER46C DNA MER2_type 102 338 0 356 256 96 26 chr12 56151984 56152140 -88130349 + MIR3 SINE MIR 14 180 -28 2405 78 0 0 chr12 56152141 56152456 -88130033 - AluSp SINE Alu 0 316 2 1492 118 83 168 chr12 56152459 56152798 -88129691 - AluJb SINE Alu -2 310 1 362 248 70 31 chr12 56152813 56152942 -88129547 + L3 LINE CR1 1253 1386 -191 698 100 60 0 chr12 56153267 56153367 -88129122 + AluSq/x SINE Alu 13 118 -195 2175 112 0 3 chr12 56153367 56153652 -88128837 + AluSg SINE Alu 1 284 -26 458 33 17 0 chr12 56153652 56153712 -88128777 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 200 35 35 0 chr12 56153712 56153741 -88128748 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 1760 144 14 41 chr12 56154272 56154591 -88127898 + AluJb SINE Alu 1 311 0 2401 95 0 16 chr12 56154604 56154919 -88127570 + AluSg SINE Alu 1 310 0 2201 103 0 4 chr12 56154933 56155256 -88127233 + AluSg SINE Alu 1 322 0 2469 54 0 0 chr12 56155256 56155536 -88126953 + AluY SINE Alu 1 310 0 271 0 0 0 chr12 56155536 56155566 -88126923 + (CAAA)n Simple_repeat Simple_repeat 1 168 0 373 347 16 0 chr12 56156014 56156138 -88126351 - MER102a DNA MER1_type 0 330 205 380 301 21 28 chr12 56156315 56156458 -88126031 + MLT1J2 LTR MaLR 265 406 -44 666 283 39 13 chr12 56156492 56156725 -88125764 - MER102a DNA MER1_type -91 239 1 2170 120 0 19 chr12 56156906 56157215 -88125274 - AluSx SINE Alu -9 303 1 2404 104 0 0 chr12 56157302 56157611 -88124878 - AluSc SINE Alu 0 309 1 698 191 56 0 chr12 56157611 56157737 -88124752 - FLAM_A SINE Alu 0 133 1 185 341 148 0 chr12 56157993 56158128 -88124361 + L2 LINE L2 2319 2473 -841 996 222 96 78 chr12 56158143 56158278 -88124211 - L2 LINE L2 -14 3299 3168 2347 96 7 0 chr12 56158278 56158579 -88123910 + AluSx SINE Alu 1 303 -9 996 222 96 78 chr12 56158579 56158893 -88123596 - L2 LINE L2 -145 3168 2842 2273 128 0 3 chr12 56159417 56159438 -88123051 - AluSx SINE Alu 0 312 292 189 0 0 0 chr12 56159438 56159459 -88123030 + (TG)n Simple_repeat Simple_repeat 2 22 0 2273 128 0 3 chr12 56159459 56159749 -88122740 - AluSx SINE Alu -20 292 2 1974 154 3 7 chr12 56159751 56160050 -88122439 - AluJo SINE Alu -14 298 1 2464 82 0 19 chr12 56160058 56160373 -88122116 - AluSc SINE Alu 0 309 1 333 121 69 0 chr12 56160967 56161025 -88121464 - MLT1A2 LTR MaLR 0 374 313 2086 88 16 49 chr12 56161027 56161335 -88121154 - AluSx SINE Alu -14 298 1 1244 146 0 0 chr12 56161350 56161521 -88120968 - AluSp SINE Alu -9 304 134 2394 86 7 0 chr12 56161521 56161824 -88120665 - AluSg SINE Alu -5 305 1 1365 117 0 0 chr12 56161832 56162073 -88120416 - AluSg/x SINE Alu 0 374 134 2365 109 0 0 chr12 56162073 56162377 -88120112 - AluSx SINE Alu -8 304 1 656 111 9 0 chr12 56163211 56163319 -88119170 + (GGAA)n Simple_repeat Simple_repeat 4 112 0 1202 120 60 6 chr12 56163319 56163502 -88118987 + AluY SINE Alu 99 291 -20 29 0 0 0 chr12 56163502 56163531 -88118958 + AT_rich Low_complexity Low_complexity 1 29 0 2101 83 58 4 chr12 56163541 56163817 -88118672 + AluSx SINE Alu 1 291 -21 344 22 0 22 chr12 56164001 56164047 -88118442 + (TC)n Simple_repeat Simple_repeat 2 46 0 297 0 0 0 chr12 56164046 56164079 -88118410 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 213 94 0 0 chr12 56164090 56164122 -88118367 + (TC)n Simple_repeat Simple_repeat 1 32 0 191 265 71 20 chr12 56165634 56165732 -88116757 + L2 LINE L2 2950 3052 -220 243 0 0 0 chr12 56166507 56166534 -88115955 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1700 283 57 77 chr12 56166928 56167052 -88115437 + L2 LINE L2 1608 1733 -1581 2443 106 0 0 chr12 56167052 56167363 -88115126 - AluSx SINE Alu -1 311 1 1700 283 57 77 chr12 56167363 56167414 -88115075 + L2 LINE L2 1733 1784 -1530 2191 109 3 0 chr12 56167414 56167743 -88114746 - AluSq SINE Alu 0 330 1 1700 283 57 77 chr12 56167743 56167956 -88114533 + L2 LINE L2 1784 2000 -1314 2505 91 0 3 chr12 56167956 56168265 -88114224 - AluSq SINE Alu -5 308 1 1700 283 57 77 chr12 56168265 56169002 -88113487 + L2 LINE L2 2000 2713 -601 1915 142 40 10 chr12 56169004 56169307 -88113182 + AluSx SINE Alu 1 312 0 697 151 17 0 chr12 56169320 56169439 -88113050 + FLAM_A SINE Alu 21 141 -1 1836 118 96 4 chr12 56169968 56170238 -88112251 - AluSx SINE Alu -16 296 2 672 125 0 0 chr12 56170801 56170889 -88111600 - AluSg1 SINE Alu -220 89 2 2539 69 0 3 chr12 56170896 56171201 -88111288 - AluY SINE Alu -3 308 5 2365 100 0 6 chr12 56171266 56171577 -88110912 - AluSc SINE Alu 0 309 1 303 330 133 12 chr12 56171596 56171718 -88110771 - MIR SINE MIR -6 256 106 2239 114 0 7 chr12 56171718 56172017 -88110472 + AluSx SINE Alu 2 298 -14 303 330 133 12 chr12 56172017 56172067 -88110422 - MIR SINE MIR -156 106 63 2088 99 11 0 chr12 56172173 56172445 -88110044 + AluSg SINE Alu 20 294 -16 243 248 43 111 chr12 56172587 56172704 -88109785 + MER102a DNA MER1_type 221 329 -1 1152 135 0 0 chr12 56172827 56173029 -88109460 - AluSg/x SINE Alu 0 330 129 2263 110 3 7 chr12 56173041 56173350 -88109139 - AluSp SINE Alu 0 313 6 387 228 13 0 chr12 56173522 56173601 -88108888 - MIR SINE MIR -98 164 85 215 246 108 0 chr12 56173788 56173853 -88108636 + MIR SINE MIR 41 112 -96 2409 97 0 3 chr12 56174094 56174402 -88108087 - AluSg SINE Alu -1 309 3 1707 187 7 0 chr12 56174406 56174700 -88107789 - AluJb SINE Alu -16 296 1 547 233 69 9 chr12 56174724 56174840 -88107649 - FLAM_A SINE Alu -10 123 1 2188 108 10 0 chr12 56174852 56175147 -88107342 - AluSq SINE Alu -15 298 1 1167 278 90 18 chr12 56175448 56175918 -88106571 - MLT1H LTR MaLR -8 541 1 2478 103 0 0 chr12 56176238 56176549 -88105940 - AluSq SINE Alu -2 311 1 2365 109 0 0 chr12 56176670 56176974 -88105515 + AluSx SINE Alu 1 304 -8 1343 115 0 0 chr12 56176974 56177148 -88105341 + AluSg/x SINE Alu 132 305 -5 286 152 0 30 chr12 56177148 56177214 -88105275 + GA-rich Low_complexity Low_complexity 1 64 0 2059 94 16 49 chr12 56177223 56177531 -88104958 + AluSx SINE Alu 1 298 -14 333 121 69 0 chr12 56177533 56177591 -88104898 + MLT1A2 LTR MaLR 313 374 0 2464 82 0 19 chr12 56178185 56178500 -88103989 + AluSc SINE Alu 1 309 0 1974 154 3 7 chr12 56178508 56178807 -88103682 + AluJo SINE Alu 1 298 -14 2273 128 0 3 chr12 56178809 56179099 -88103390 + AluSx SINE Alu 2 292 -20 189 0 0 0 chr12 56179099 56179120 -88103369 + (CA)n Simple_repeat Simple_repeat 2 22 0 2273 128 0 3 chr12 56179120 56179141 -88103348 + AluSx SINE Alu 292 312 0 564 253 109 51 chr12 56179665 56179977 -88102512 + L2 LINE L2 2842 3171 -142 2266 103 10 0 chr12 56179979 56180279 -88102210 - AluSx SINE Alu -9 303 1 2206 125 0 0 chr12 56180336 56180632 -88101857 - AluSg SINE Alu -14 296 1 2089 117 0 42 chr12 56180634 56180942 -88101547 - AluSx SINE Alu -17 295 1 1756 171 17 17 chr12 56180944 56181242 -88101247 - AluJo SINE Alu -14 298 1 318 305 193 41 chr12 56181271 56181468 -88101021 + MIR SINE MIR 2 228 -34 223 178 0 22 chr12 56183113 56183158 -88099331 + GA-rich Low_complexity Low_complexity 5 48 0 259 358 0 0 chr12 56183537 56183646 -88098843 + C-rich Low_complexity Low_complexity 1 109 0 1988 120 18 3 chr12 56184073 56184357 -88098132 - AluSg SINE Alu -22 288 1 1966 134 13 7 chr12 56184456 56184754 -88097735 - AluSx SINE Alu -12 300 1 482 232 222 24 chr12 56184836 56185043 -88097446 + MIR SINE MIR 12 259 -3 2274 128 0 0 chr12 56185583 56185889 -88096600 + AluSq SINE Alu 1 306 -7 473 97 0 0 chr12 56185911 56185983 -88096506 - Alu SINE Alu 0 312 241 1040 138 7 0 chr12 56185987 56186132 -88096357 - AluSq/x SINE Alu -167 146 1 839 180 0 0 chr12 56187770 56187898 -88094591 - FLAM_A SINE Alu -5 128 1 700 190 162 0 chr12 56188443 56188622 -88093867 + MER20 DNA MER1_type 6 213 -6 1154 191 183 0 chr12 56189357 56189603 -88092886 + AluJo SINE Alu 3 293 -9 2439 63 0 3 chr12 56189712 56189997 -88092492 - AluSc SINE Alu -25 284 1 2494 82 3 0 chr12 56190045 56190349 -88092140 - AluSp SINE Alu -8 305 1 278 269 10 67 chr12 56190461 56190565 -88091924 - L2 LINE L2 -55 3258 3161 321 336 45 0 chr12 56190980 56191090 -88091399 + L1MC4 LINE L1 7928 8042 0 228 35 0 0 chr12 56191115 56191144 -88091345 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1858 124 11 7 chr12 56191148 56191421 -88091068 - AluSx SINE Alu -37 275 2 2107 95 40 17 chr12 56192292 56192588 -88089901 + AluY SINE Alu 1 303 -8 286 279 158 55 chr12 56192642 56192807 -88089682 + Charlie8 DNA MER1_type 73 254 -2163 375 245 43 29 chr12 56192899 56193038 -88089451 - L1ME LINE L1 -404 5717 5577 1466 184 0 4 chr12 56193061 56193335 -88089154 - AluSx SINE Alu 0 307 35 2600 51 0 16 chr12 56193489 56193801 -88088688 - AluY SINE Alu 0 311 5 2242 116 7 0 chr12 56194403 56194697 -88087792 + AluSx SINE Alu 1 296 -16 1462 198 8 4 chr12 56194779 56195026 -88087463 + AluJo SINE Alu 1 248 -64 2010 86 65 7 chr12 56195048 56195327 -88087162 + AluSc SINE Alu 1 295 -14 292 250 9 89 chr12 56196177 56196289 -88086200 + MIR SINE MIR 42 144 -64 1504 156 48 51 chr12 56196296 56196591 -88085898 + AluJb SINE Alu 1 294 -18 2339 93 3 3 chr12 56196594 56196894 -88085595 + AluSq SINE Alu 1 300 -13 252 0 0 0 chr12 56198308 56198336 -88084153 + (T)n Simple_repeat Simple_repeat 1 28 0 2325 93 0 0 chr12 56199642 56199931 -88082558 + AluSg SINE Alu 1 289 -21 188 227 45 0 chr12 56200002 56200046 -88082443 + MIR SINE MIR 98 143 -65 1172 101 0 67 chr12 56200129 56200307 -88082182 + AluSx SINE Alu 1 166 -146 415 118 65 32 chr12 56201583 56201676 -88080813 - MER41B LTR ERV1 -35 600 505 2010 152 0 10 chr12 56201677 56201974 -88080515 + AluJb SINE Alu 1 294 -18 2860 0 3 3 chr12 56201977 56202284 -88080205 + AluYa5 SINE Alu 1 307 -4 2610 37 0 7 chr12 56202284 56202577 -88079912 + AluY SINE Alu 1 292 -19 7811 65 33 2 chr12 56202579 56203709 -88078780 + PABL_A-int LTR ERV1 1902 3066 -1949 1228 145 5 16 chr12 56203852 56204038 -88078451 - AluJo SINE Alu -128 184 1 295 149 45 0 chr12 56204040 56204107 -88078382 + L1MB7 LINE L1 6114 6183 -1 730 131 8 3 chr12 56204147 56204383 -88078106 + AluSx SINE Alu 1 309 0 181 167 28 0 chr12 56204769 56204805 -88077684 + MIR SINE MIR 98 134 -128 2092 121 7 3 chr12 56205508 56205805 -88076684 - AluSx SINE Alu -14 298 1 1703 112 24 12 chr12 56206083 56206333 -88076156 - AluSc SINE Alu -56 253 1 27 0 0 0 chr12 56206333 56206360 -88076129 + AT_rich Low_complexity Low_complexity 1 27 0 1514 113 92 13 chr12 56207231 56207470 -88075019 + AluY SINE Alu 39 296 -15 2137 114 17 0 chr12 56207742 56208031 -88074458 + AluSx SINE Alu 1 294 -18 1552 190 39 0 chr12 56208305 56208584 -88073905 + AluJb SINE Alu 9 298 -14 816 224 50 0 chr12 56208585 56208746 -88073743 + AluJb SINE Alu 134 302 -10 2345 64 34 7 chr12 56208765 56209062 -88073427 - AluSc SINE Alu -2 307 3 274 234 84 28 chr12 56209111 56209218 -88073271 - MIR SINE MIR 0 262 150 1798 180 3 7 chr12 56209631 56209931 -88072558 - AluJb SINE Alu -13 299 1 1991 124 50 0 chr12 56210517 56210800 -88071689 + AluSx SINE Alu 1 297 -15 2338 91 3 13 chr12 56211016 56211325 -88071164 - AluSp SINE Alu -7 306 1 2157 122 3 25 chr12 56211353 56211673 -88070816 - AluSp SINE Alu 0 313 1 2509 87 0 0 chr12 56211686 56211995 -88070494 - AluSc SINE Alu 0 309 1 503 238 113 24 chr12 56212424 56212592 -88069897 + MER20B DNA MER1_type 1 183 -600 402 260 26 58 chr12 56212729 56212883 -88069606 + L1MC4 LINE L1 7789 7937 -105 198 0 0 0 chr12 56213311 56213333 -88069156 + (T)n Simple_repeat Simple_repeat 1 22 0 1039 167 198 28 chr12 56213557 56213711 -88068778 - AluJb SINE Alu -10 302 176 2593 74 0 0 chr12 56213711 56214022 -88068467 - AluY SINE Alu 0 311 1 1039 167 198 28 chr12 56214022 56214119 -88068370 - AluJb SINE Alu -136 176 8 1735 119 126 0 chr12 56214177 56214438 -88068051 - AluSg SINE Alu -6 294 1 2206 112 6 3 chr12 56214454 56214766 -88067723 - AluSq SINE Alu 0 313 1 1494 147 23 31 chr12 56214769 56215027 -88067462 - AluJo SINE Alu -18 294 39 1240 202 162 0 chr12 56215087 56215340 -88067149 - AluJb SINE Alu -8 294 1 381 259 182 21 chr12 56216105 56216248 -88066241 - MER63A DNA MER1_type -3 207 42 1117 87 41 23 chr12 56216313 56216485 -88066004 + AluSg/x SINE Alu 122 296 -16 2279 81 3 17 chr12 56216887 56217184 -88065305 + AluSg SINE Alu 1 293 -17 252 0 0 0 chr12 56220780 56220808 -88061681 + (T)n Simple_repeat Simple_repeat 1 28 0 2105 120 0 3 chr12 56221684 56221967 -88060522 + AluSg SINE Alu 1 282 -28 1845 147 33 4 chr12 56221968 56222241 -88060248 + AluJo SINE Alu 11 291 -21 1881 122 28 7 chr12 56224564 56224850 -88057639 + AluJb SINE Alu 1 292 -20 24 0 0 0 chr12 56225530 56225554 -88056935 + GC_rich Low_complexity Low_complexity 1 24 0 2129 111 4 0 chr12 56226632 56226911 -88055578 - AluSp SINE Alu -33 280 1 994 98 0 15 chr12 56226911 56227044 -88055445 - AluSq/x SINE Alu -179 133 3 2609 59 7 0 chr12 56227274 56227581 -88054908 - AluY SINE Alu -2 309 1 333 279 162 0 chr12 56227652 56227763 -88054726 + MER5A DNA MER1_type 61 189 0 342 277 88 7 chr12 56227765 56227902 -88054587 + L2 LINE L2 2320 2467 -847 879 198 9 69 chr12 56227975 56228192 -88054297 - AluJo SINE Alu -19 293 90 230 214 107 8 chr12 56228320 56228451 -88054038 + AluJb SINE Alu 66 209 -93 384 171 48 0 chr12 56228794 56228899 -88053590 - PABL_A-int LTR ERV1 -3755 1260 1151 * 6228 74 8 48 chr12 56228891 56229156 -88053333 - PABL_A-int LTR ERV1 -4116 899 625 2432 96 7 0 chr12 56229156 56229459 -88053030 + AluSp SINE Alu 1 305 -8 6228 74 8 48 chr12 56229459 56229660 -88052829 - PABL_A-int LTR ERV1 -4390 625 418 2374 99 20 0 chr12 56229660 56229963 -88052526 - AluSg1 SINE Alu 0 309 1 6228 74 8 48 chr12 56229963 56230431 -88052058 - PABL_A-int LTR ERV1 -4597 418 1 950 73 0 0 chr12 56230431 56230554 -88051935 - PABL_A LTR ERV1 0 660 538 2071 130 7 0 chr12 56230659 56230951 -88051538 - AluSc SINE Alu -15 294 1 1566 231 64 20 chr12 56230952 56231450 -88051039 - L1M4 LINE L1 -2364 3782 3263 1138 181 0 54 chr12 56231450 56231671 -88050818 - AluJo SINE Alu -7 305 97 378 259 99 0 chr12 56231671 56231752 -88050737 + L1MC4 LINE L1 6620 6708 -1334 2139 97 7 7 chr12 56231906 56232194 -88050295 - AluSp SINE Alu -21 292 5 545 213 154 35 chr12 56232831 56233000 -88049489 - MER20 DNA MER1_type 0 219 31 663 165 0 0 chr12 56233315 56233434 -88049055 + AluSg/x SINE Alu 191 309 0 2504 87 62 9 chr12 56233436 56233647 -88048842 + PABL_A-int LTR ERV1 3249 3447 -1568 2279 123 0 0 chr12 56233647 56233947 -88048542 - AluSg SINE Alu -10 300 1 2504 87 62 9 chr12 56233947 56234173 -88048316 + PABL_A-int LTR ERV1 3447 3709 -1306 559 238 24 0 chr12 56234496 56234622 -88047867 - FLAM_C SINE Alu -4 129 1 2249 115 3 10 chr12 56235214 56235528 -88046961 - AluSp SINE Alu -1 312 1 30 27 0 0 chr12 56235533 56235570 -88046919 + AT_rich Low_complexity Low_complexity 1 37 0 242 290 76 23 chr12 56235573 56235704 -88046785 - L1MEc LINE L1 -4547 1849 1712 1937 152 7 3 chr12 56235721 56236023 -88046466 - AluSc SINE Alu -6 303 1 248 189 11 67 chr12 56236024 56236114 -88046375 - MLT1F1 LTR MaLR -474 93 9 249 158 0 18 chr12 56236114 56236171 -88046318 - L1MC3 LINE L1 -719 7066 7011 923 156 44 11 chr12 56236171 56236351 -88046138 + MLT1C LTR MaLR 1 186 -281 2362 75 6 28 chr12 56236351 56236670 -88045819 + AluSq SINE Alu 1 312 -1 658 56 45 0 chr12 56236715 56236804 -88045685 + AluSg/x SINE Alu 205 297 -15 1005 234 30 24 chr12 56236809 56237104 -88045385 + MLT1C LTR MaLR 171 467 0 3347 207 30 33 chr12 56237104 56237972 -88044517 - L1MC3 LINE L1 -770 7015 6151 1716 167 0 72 chr12 56238972 56239112 -88043377 + AluJb SINE Alu 1 107 -205 2192 105 3 23 chr12 56239112 56239416 -88043073 - AluSq SINE Alu -15 298 1 1716 167 0 72 chr12 56239416 56239593 -88042896 + AluJb SINE Alu 107 295 -17 492 165 21 0 chr12 56239857 56239954 -88042535 + L1PA8 LINE L1 5964 6062 -110 2050 153 0 0 chr12 56239959 56240254 -88042235 + AluSg SINE Alu 1 295 -15 943 73 15 0 chr12 56240257 56240394 -88042095 + L1P4 LINE L1 5595 5733 -435 236 167 0 19 chr12 56240494 56240548 -88041941 + Alu SINE Alu 245 297 -5 2991 79 96 49 chr12 56240548 56241078 -88041411 + L1PA7 LINE L1 5598 6151 0 204 67 22 44 chr12 56242966 56243011 -88039478 + (CTG)n Simple_repeat Simple_repeat 3 46 0 377 150 60 0 chr12 56244959 56245092 -88037397 + (TTAA)n Simple_repeat Simple_repeat 3 143 0 2095 116 10 3 chr12 56245102 56245394 -88037095 - AluSx SINE Alu -18 294 1 1940 157 0 7 chr12 56245399 56245692 -88036797 - AluJb SINE Alu -17 295 5 808 199 74 0 chr12 56246610 56246786 -88035703 - MER5A DNA MER1_type 0 189 1 2330 108 0 3 chr12 56246852 56247159 -88035330 + AluSg SINE Alu 1 306 -4 455 315 80 5 chr12 56247934 56248134 -88034355 - MIR SINE MIR 0 262 48 1985 106 81 18 chr12 56249524 56249808 -88032681 - AluSx SINE Alu -10 302 1 182 234 106 0 chr12 56250067 56250114 -88032375 + L2 LINE L2 3170 3221 -51 254 218 18 0 chr12 56250240 56250295 -88032194 + L2 LINE L2 3217 3272 0 203 150 25 88 chr12 56250631 56250711 -88031778 + (CCCTG)n Simple_repeat Simple_repeat 2 76 0 290 372 93 0 chr12 56251564 56251693 -88030796 - L2 LINE L2 -5 3267 3127 3032 70 23 5 chr12 56251798 56252363 -88030126 - PABL_A LTR ERV1 0 660 1 10781 68 21 5 chr12 56252364 56252857 -88029632 - PABL_A-int LTR ERV1 -1 5014 4531 2307 110 0 0 chr12 56252857 56253157 -88029332 - AluSx SINE Alu -12 300 1 10781 68 21 5 chr12 56253157 56254153 -88028336 - PABL_A-int LTR ERV1 -484 4531 3500 4305 79 5 47 chr12 56254272 56254446 -88028043 - PABL_A-int LTR ERV1 -4399 616 436 2374 99 20 0 chr12 56254446 56254749 -88027740 - AluSg1 SINE Alu 0 309 1 4305 79 5 47 chr12 56254749 56255217 -88027272 - PABL_A-int LTR ERV1 -4579 436 1 4806 64 78 0 chr12 56255217 56255829 -88026660 - PABL_A LTR ERV1 0 660 1 22 56 0 0 chr12 56255979 56256015 -88026474 + AT_rich Low_complexity Low_complexity 1 36 0 2242 113 0 0 chr12 56256115 56256406 -88026083 + AluSx SINE Alu 1 291 -21 321 262 12 0 chr12 56256591 56256675 -88025814 - L1MC/D LINE L1 -2019 5789 5705 332 315 61 30 chr12 56256839 56257004 -88025485 - L3 LINE CR1 -21 1556 1387 268 192 0 19 chr12 56257691 56257743 -88024746 - MIR SINE MIR -132 130 80 1021 117 0 0 chr12 56258092 56258237 -88024252 - Tigger1 DNA MER2_type -1189 1229 1085 1616 209 0 14 chr12 56258258 56258555 -88023934 + AluJb SINE Alu 1 293 -19 1274 178 0 101 chr12 56258555 56258636 -88023853 - Tigger1 DNA MER2_type -1947 471 383 2348 93 3 7 chr12 56258636 56258936 -88023553 - AluSx SINE Alu -13 299 1 1274 178 0 101 chr12 56258936 56258947 -88023542 - Tigger1 DNA MER2_type -2035 383 372 1006 105 0 0 chr12 56258947 56259080 -88023409 - FLAM_C SINE Alu 0 133 1 1274 178 0 101 chr12 56259080 56259273 -88023216 - Tigger1 DNA MER2_type -2046 372 214 943 173 22 6 chr12 56259504 56259683 -88022806 - Tigger1 DNA MER2_type -2207 211 30 222 269 10 48 chr12 56259905 56260009 -88022480 + C-rich Low_complexity Low_complexity 3 102 0 385 276 37 30 chr12 56261355 56261489 -88021000 + L2 LINE L2 2917 3051 -221 261 229 14 0 chr12 56261715 56261747 -88020742 + (TGAA)n Simple_repeat Simple_repeat 4 34 -40 1847 142 71 7 chr12 56261747 56261881 -88020608 + AluJo SINE Alu 1 125 -187 2486 70 13 0 chr12 56261881 56262183 -88020306 + AluY SINE Alu 1 306 -5 1847 142 71 7 chr12 56262183 56262329 -88020160 + AluJo SINE Alu 125 299 -13 261 229 14 0 chr12 56262329 56262366 -88020123 + (TGAA)n Simple_repeat Simple_repeat 34 74 0 267 278 67 0 chr12 56263397 56263487 -88019002 - MIR SINE MIR -72 190 95 2293 129 0 3 chr12 56263488 56263799 -88018690 - AluSg SINE Alu 0 310 1 180 0 0 0 chr12 56263900 56263920 -88018569 + (T)n Simple_repeat Simple_repeat 1 20 0 6323 18 6 1 chr12 56264033 56264707 -88017782 - SVA Other Other -4 1382 706 312 27 0 0 chr12 56266222 56266259 -88016230 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 2468 56 0 30 chr12 56266864 56267168 -88015321 - AluY SINE Alu -15 296 2 2295 82 0 0 chr12 56267214 56267531 -88014958 - AluSg SINE Alu 0 319 3 421 292 113 41 chr12 56268007 56268192 -88014297 - HAL1b LINE L1 -646 1533 1363 2246 139 0 0 chr12 56268192 56268502 -88013987 + AluSx SINE Alu 1 310 -2 2437 107 0 0 chr12 56268509 56268819 -88013670 + AluSg SINE Alu 1 310 0 421 292 113 41 chr12 56268819 56269268 -88013221 - HAL1b LINE L1 -821 1358 221 327 177 0 0 chr12 56269350 56269412 -88013077 + T-rich Low_complexity Low_complexity 1 62 0 691 210 147 6 chr12 56269776 56269933 -88012556 - MER5A DNA MER1_type -2 187 9 213 216 0 0 chr12 56269951 56269988 -88012501 + polypyrimidine Low_complexity Low_complexity 1 37 0 1879 168 26 3 chr12 56270006 56270310 -88012179 - AluSx SINE Alu -1 311 1 2287 131 0 0 chr12 56271149 56271461 -88011028 - AluSx SINE Alu 0 312 1 300 257 209 40 chr12 56271556 56271852 -88010637 + L2 LINE L2 1487 1832 -1482 936 167 68 65 chr12 56272034 56272115 -88010374 - L1MB8 LINE L1 -3 6175 6096 2443 71 0 19 chr12 56272115 56272426 -88010063 + AluY SINE Alu 1 305 -6 936 167 68 65 chr12 56272426 56272576 -88009913 - L1MB8 LINE L1 -82 6096 5940 1852 152 6 58 chr12 56272576 56272905 -88009584 - AluJo SINE Alu 0 312 1 936 167 68 65 chr12 56272905 56272935 -88009554 - L1MB8 LINE L1 -238 5940 5912 2472 93 0 0 chr12 56273935 56274246 -88008243 - AluY SINE Alu 0 311 1 1325 149 5 10 chr12 56274268 56274476 -88008013 + AluJo SINE Alu 87 293 -19 2438 83 7 3 chr12 56274506 56274806 -88007683 + AluSx SINE Alu 1 301 -11 2330 106 3 0 chr12 56274806 56275107 -88007382 + AluSp SINE Alu 1 302 -11 1720 154 14 17 chr12 56275109 56275402 -88007087 + AluJb SINE Alu 2 293 -19 350 200 74 0 chr12 56275409 56275504 -88006985 - L1MB8 LINE L1 -254 5924 5823 1440 209 7 24 chr12 56275504 56275796 -88006693 - AluJb SINE Alu -12 300 14 4094 169 110 57 chr12 56275846 56276813 -88005676 - L1MB8 LINE L1 -347 5831 4917 1863 152 7 14 chr12 56276813 56277134 -88005355 - AluJb SINE Alu 0 319 1 4094 169 110 57 chr12 56277134 56277517 -88004972 - L1MB8 LINE L1 -1261 4917 4556 2160 108 0 0 chr12 56277517 56277820 -88004669 + AluSc SINE Alu 1 303 0 4094 169 110 57 chr12 56277820 56277972 -88004517 - L1MB8 LINE L1 -1622 4556 4414 180 0 0 0 chr12 56277972 56277992 -88004497 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 746 188 0 0 chr12 56277998 56278115 -88004374 - FLAM_C SINE Alu -15 118 2 4094 169 110 57 chr12 56278115 56278335 -88004154 - L1MB8 LINE L1 -1768 4410 3958 1665 110 0 42 chr12 56278338 56278575 -88003914 - AluSg/x SINE Alu 0 310 84 230 146 0 55 chr12 56279201 56279256 -88003233 + Alu SINE Alu 250 301 -7 483 277 66 0 chr12 56279263 56279429 -88003060 - L1MB8 LINE L1 -2314 3832 3656 950 202 24 24 chr12 56279445 56279550 -88002939 + L1M4 LINE L1 2725 2829 -3317 1250 244 0 63 chr12 56279550 56279869 -88002620 + AluJb SINE Alu 2 300 -2 950 202 24 24 chr12 56279869 56280015 -88002474 + L1M4 LINE L1 2828 2976 -3170 1008 120 0 0 chr12 56280042 56280175 -88002314 + AluSq/x SINE Alu 1 133 -179 821 211 85 0 chr12 56280208 56280431 -88002058 + L1M4 LINE L1 2981 3222 -2924 2437 203 42 38 chr12 56280437 56280989 -88001500 - MLT2B3 LTR ERVL 0 554 1 477 226 137 0 chr12 56280989 56281091 -88001398 + AluJo/FLAM SINE Alu 1 116 -186 1284 216 127 0 chr12 56281092 56281360 -88001129 + AluJo SINE Alu 1 302 0 273 182 0 0 chr12 56281377 56281421 -88001068 - MER66B LTR ERV1 -141 345 302 1053 171 6 6 chr12 56281428 56281598 -88000891 - AluSx SINE Alu -11 299 130 312 309 25 0 chr12 56281632 56281713 -88000776 - L1MC4 LINE L1 -1343 6699 6617 822 81 0 0 chr12 56281713 56281812 -88000677 - AluSx SINE Alu -177 136 38 209 152 25 25 chr12 56281812 56281891 -88000598 + (TA)n Simple_repeat Simple_repeat 1 79 0 35 54 0 0 chr12 56281891 56281947 -88000542 + AT_rich Low_complexity Low_complexity 1 56 0 831 93 0 0 chr12 56281947 56282054 -88000435 - U6 snRNA snRNA 0 107 1 632 156 0 0 chr12 56282058 56282148 -88000341 - AluJ/FLAM SINE Alu -221 91 2 746 245 74 4 chr12 56282150 56282407 -88000082 - L1MB8 LINE L1 -2877 3269 2995 1257 241 55 96 chr12 56282539 56282592 -87999897 - MER77 LTR ERV1 -11 594 540 2018 108 27 34 chr12 56282592 56282888 -87999601 + AluSx SINE Alu 1 294 -18 1257 241 55 96 chr12 56282888 56283309 -87999180 - MER77 LTR ERV1 -65 540 144 910 176 54 0 chr12 56283309 56283457 -87999032 - FRAM SINE Alu -10 156 1 1257 241 55 96 chr12 56283457 56283545 -87998944 - MER77 LTR ERV1 -461 144 54 1653 178 17 24 chr12 56283588 56283923 -87998566 - AluJo SINE Alu 0 312 1 1112 134 13 16 chr12 56283938 56284216 -87998273 - MER46A DNA MER2_type 0 236 2 2294 85 24 3 chr12 56284236 56284531 -87997958 + AluSx SINE Alu 1 301 -11 330 244 0 0 chr12 56284531 56284617 -87997872 - L1M4 LINE L1 -2198 3948 3863 821 81 7 22 chr12 56284619 56284755 -87997734 + MER4A LTR ERV1 3 136 -528 2139 80 77 0 chr12 56284756 56285042 -87997447 + AluSg SINE Alu 1 308 -2 2559 51 10 16 chr12 56285042 56285355 -87997134 + AluY SINE Alu 1 311 0 1262 169 88 122 chr12 56286712 56287283 -87995206 + MER4A LTR ERV1 116 872 0 551 241 46 69 chr12 56287283 56287330 -87995159 - L1M4 LINE L1 -2280 3866 3819 2522 67 7 0 chr12 56287330 56287628 -87994861 + AluY SINE Alu 1 300 -11 551 241 46 69 chr12 56287628 56287796 -87994693 - L1M4 LINE L1 -2327 3819 3656 950 202 24 24 chr12 56287812 56287917 -87994572 + L1M4 LINE L1 2725 2829 -3317 1250 244 0 63 chr12 56287917 56288236 -87994253 + AluJb SINE Alu 2 300 -2 950 202 24 24 chr12 56288236 56288382 -87994107 + L1M4 LINE L1 2828 2976 -3170 1008 120 0 0 chr12 56288409 56288542 -87993947 + AluSq/x SINE Alu 1 133 -179 897 203 75 111 chr12 56288575 56288804 -87993685 + L1M4 LINE L1 2981 3217 -2929 2437 203 42 38 chr12 56288804 56289356 -87993133 - MLT2B3 LTR ERVL 0 554 1 477 226 137 0 chr12 56289356 56289458 -87993031 + AluJo/FLAM SINE Alu 1 116 -186 2154 133 0 13 chr12 56289459 56289768 -87992721 + AluSx SINE Alu 1 305 -7 897 203 75 111 chr12 56289768 56289978 -87992511 + L1M4 LINE L1 3215 3407 -2739 1208 211 135 0 chr12 56289978 56290244 -87992245 + AluJo SINE Alu 1 302 0 273 182 0 0 chr12 56290261 56290305 -87992184 - MER66B LTR ERV1 -141 345 302 272 293 0 13 chr12 56290486 56290561 -87991928 - L3 LINE CR1 -117 1460 1387 268 192 0 19 chr12 56291248 56291300 -87991189 - MIR SINE MIR -132 130 80 1021 117 0 0 chr12 56291649 56291794 -87990695 - Tigger1 DNA MER2_type -1189 1229 1085 1616 209 0 14 chr12 56291815 56292112 -87990377 + AluJb SINE Alu 1 293 -19 1274 178 0 101 chr12 56292112 56292193 -87990296 - Tigger1 DNA MER2_type -1947 471 383 2393 93 0 7 chr12 56292193 56292494 -87989995 - AluSx SINE Alu -13 299 1 1274 178 0 101 chr12 56292494 56292505 -87989984 - Tigger1 DNA MER2_type -2035 383 372 1006 105 0 0 chr12 56292505 56292638 -87989851 - FLAM_C SINE Alu 0 133 1 1274 178 0 101 chr12 56292638 56292831 -87989658 - Tigger1 DNA MER2_type -2046 372 214 943 173 22 6 chr12 56293062 56293241 -87989248 - Tigger1 DNA MER2_type -2207 211 30 206 279 10 48 chr12 56293463 56293567 -87988922 + C-rich Low_complexity Low_complexity 3 102 0 385 276 37 30 chr12 56294895 56295029 -87987460 + L2 LINE L2 2917 3051 -221 261 229 14 0 chr12 56295255 56295287 -87987202 + (TGAA)n Simple_repeat Simple_repeat 4 34 -40 1816 146 71 7 chr12 56295287 56295421 -87987068 + AluJo SINE Alu 1 125 -187 2463 73 13 0 chr12 56295421 56295723 -87986766 + AluY SINE Alu 1 306 -5 1816 146 71 7 chr12 56295723 56295869 -87986620 + AluJo SINE Alu 125 299 -13 261 229 14 0 chr12 56295869 56295906 -87986583 + (TGAA)n Simple_repeat Simple_repeat 34 74 0 267 278 67 0 chr12 56296937 56297027 -87985462 - MIR SINE MIR -72 190 95 2269 132 0 3 chr12 56297028 56297339 -87985150 - AluSg SINE Alu 0 310 1 180 0 0 0 chr12 56297440 56297460 -87985029 + (T)n Simple_repeat Simple_repeat 1 20 0 6323 18 6 1 chr12 56297573 56298247 -87984242 - SVA Other Other -4 1382 706 312 27 0 0 chr12 56299761 56299798 -87982691 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 2421 66 0 30 chr12 56300404 56300708 -87981781 - AluY SINE Alu -14 297 3 403 281 68 14 chr12 56300737 56300883 -87981606 - L1ME4a LINE L1 -3 6118 5965 2637 42 0 13 chr12 56300887 56301199 -87981290 - AluY SINE Alu -3 308 1 1082 142 47 9 chr12 56301199 56301410 -87981079 + L1MB7 LINE L1 5908 6126 -58 245 98 24 0 chr12 56301915 56301956 -87980533 + (TTTTC)n Simple_repeat Simple_repeat 3 44 0 2370 101 7 0 chr12 56301990 56302296 -87980193 - AluSx SINE Alu -4 308 1 610 177 62 67 chr12 56304131 56304201 -87978288 + MER5A DNA MER1_type 6 75 -114 2099 128 3 7 chr12 56304201 56304507 -87977982 + AluSx SINE Alu 1 305 -7 610 177 62 67 chr12 56304507 56304620 -87977869 + MER5A DNA MER1_type 75 189 0 235 283 33 11 chr12 56305508 56305600 -87976889 + L1ME LINE L1 5497 5590 -531 452 110 0 61 chr12 56305604 56305686 -87976803 - Alu SINE Alu -4 305 229 37 29 0 43 chr12 56305686 56305726 -87976763 + AT_rich Low_complexity Low_complexity 1 41 -26 2364 101 3 0 chr12 56305726 56306024 -87976465 - AluSp SINE Alu -14 299 1 2327 117 0 0 chr12 56306025 56306324 -87976165 - AluSx SINE Alu -13 299 1 37 29 0 43 chr12 56306324 56306351 -87976138 + AT_rich Low_complexity Low_complexity 40 67 0 701 203 14 0 chr12 56306383 56306521 -87975968 + MIR SINE MIR 110 249 -13 185 91 0 30 chr12 56306533 56306566 -87975923 + (TTA)n Simple_repeat Simple_repeat 1 32 0 4530 143 24 26 chr12 56306804 56307665 -87974824 - L1MB8 LINE L1 0 6178 5319 250 329 99 28 chr12 56307670 56307883 -87974606 - L2 LINE L2 -103 3210 2983 3814 184 94 37 chr12 56308278 56308383 -87974106 - L1MA9 LINE L1 -26 6145 6047 1888 161 10 3 chr12 56308383 56308399 -87974090 - AluSx SINE Alu 0 312 298 217 0 0 0 chr12 56308399 56308423 -87974066 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 1888 161 10 3 chr12 56308423 56308705 -87973784 - AluSx SINE Alu -14 298 2 3814 184 94 37 chr12 56308705 56308862 -87973627 - L1MA9 LINE L1 -124 6047 5900 2166 110 3 7 chr12 56308862 56309170 -87973319 - AluSg SINE Alu -1 309 3 3814 184 94 37 chr12 56309170 56309531 -87972958 - L1MA9 LINE L1 -271 5900 5561 2432 70 0 10 chr12 56309531 56309844 -87972645 - AluY SINE Alu -1 310 1 1684 155 0 68 chr12 56309852 56310174 -87972315 - AluJo SINE Alu 0 312 13 3814 184 94 37 chr12 56310174 56310480 -87972009 - L1MA9 LINE L1 -616 5555 5268 2810 130 18 2 chr12 56310480 56310918 -87971571 - L1PA16 LINE L1 -5 6161 5717 3814 184 94 37 chr12 56310918 56311815 -87970674 - L1MA9 LINE L1 -903 5268 3520 781 132 0 59 chr12 56311818 56311954 -87970535 - FRAM SINE Alu -9 167 40 1637 178 3 29 chr12 56311965 56312134 -87970355 - AluJo SINE Alu -11 301 142 2324 92 3 0 chr12 56312134 56312439 -87970050 - AluSp SINE Alu -7 306 1 1637 178 3 29 chr12 56312439 56312578 -87969911 - AluJo SINE Alu -170 142 1 543 231 9 0 chr12 56312635 56312743 -87969746 - AluSg/x SINE Alu -14 298 190 2263 108 0 0 chr12 56313172 56313478 -87969011 - AluSg SINE Alu -2 308 3 512 345 130 23 chr12 56313705 56314137 -87968352 - HAL1b LINE L1 -377 971 494 2096 142 3 0 chr12 56314139 56314450 -87968039 + AluSx SINE Alu 1 312 0 2216 93 3 10 chr12 56314455 56314756 -87967733 + AluSp SINE Alu 1 299 -14 747 209 46 69 chr12 56314758 56315108 -87967381 - L1M4 LINE L1 -1534 4612 4271 1239 92 29 12 chr12 56315670 56315843 -87966646 + L1PA11 LINE L1 5999 6174 0 308 286 90 7 chr12 56315881 56316016 -87966473 + MIR SINE MIR 47 192 -62 2296 104 0 0 chr12 56316017 56316325 -87966164 + AluSg SINE Alu 1 308 -2 1506 189 0 63 chr12 56316744 56317062 -87965427 - AluJb SINE Alu -14 298 1 487 335 63 34 chr12 56317064 56317270 -87965219 - L1MC/D LINE L1 -2205 5603 5392 556 160 0 99 chr12 56317272 56317312 -87965177 - FLAM_A SINE Alu -169 142 100 2097 98 3 7 chr12 56317312 56317631 -87964858 + AluSp SINE Alu 1 318 0 556 160 0 99 chr12 56317631 56317720 -87964769 - FLAM_A SINE Alu -211 100 25 240 104 21 0 chr12 56317736 56317784 -87964705 - L1MC/D LINE L1 -2440 5368 5320 314 291 77 26 chr12 56317793 56317910 -87964579 - L1MC/D LINE L1 -833 5313 5191 25 31 0 0 chr12 56318131 56318163 -87964326 + AT_rich Low_complexity Low_complexity 1 32 0 1764 182 7 0 chr12 56318221 56318517 -87963972 + AluJo SINE Alu 1 298 -14 1993 120 0 13 chr12 56318519 56318818 -87963671 - AluY SINE Alu -16 295 1 2232 81 3 32 chr12 56318828 56319136 -87963353 - AluSq SINE Alu -14 299 1 223 333 68 52 chr12 56319257 56319449 -87963040 + MIR SINE MIR 13 207 -55 216 178 27 82 chr12 56320548 56320621 -87961868 + G-rich Low_complexity Low_complexity 1 69 0 312 289 39 83 chr12 56321692 56321848 -87960641 - L2 LINE L2 -6 3266 3118 331 306 117 0 chr12 56321946 56322057 -87960432 - L2 LINE L2 -5 3267 3144 190 284 80 23 chr12 56322224 56322312 -87960177 - L2 LINE L2 -262 3010 2918 552 290 78 5 chr12 56322832 56323025 -87959464 - MIR SINE MIR -28 234 28 1608 120 8 4 chr12 56323433 56323674 -87958815 - AluSg SINE Alu -68 242 1 643 293 99 5 chr12 56325891 56326113 -87956376 - MIR SINE MIR 0 262 20 335 188 208 20 chr12 56326288 56326389 -87956100 + L2 LINE L2 3189 3308 -5 592 271 18 29 chr12 56326398 56326568 -87955921 - MIR SINE MIR -93 169 2 217 224 0 17 chr12 56328075 56328133 -87954356 + (TG)n Simple_repeat Simple_repeat 1 57 0 26 0 0 0 chr12 56329867 56329893 -87952596 + AT_rich Low_complexity Low_complexity 1 26 0 664 266 53 34 chr12 56334115 56334322 -87948167 + MIR SINE MIR 40 250 -12 562 290 118 0 chr12 56335551 56335720 -87946769 - MER91B DNA MER1_type -1 189 1 184 234 286 13 chr12 56336431 56336508 -87945981 + MIR3 SINE MIR 91 188 -20 2003 121 20 0 chr12 56337308 56337606 -87944883 - AluSx SINE Alu -3 309 6 753 194 0 0 chr12 56337606 56337735 -87944754 - FLAM_C SINE Alu -6 137 9 1470 187 15 53 chr12 56339076 56339418 -87943071 + MLT1A2 LTR MaLR 35 363 -11 210 143 0 0 chr12 56339721 56339756 -87942733 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 2205 123 0 0 chr12 56340190 56340498 -87941991 + AluSx SINE Alu 3 310 -2 816 115 0 0 chr12 56340498 56340611 -87941878 + L1PA10 LINE L1 6053 6165 -3 27 49 0 0 chr12 56341601 56341642 -87940847 + GC_rich Low_complexity Low_complexity 1 41 0 211 265 0 0 chr12 56342761 56342810 -87939679 - L2 LINE L2 -4 3309 3261 233 252 154 16 chr12 56342844 56342967 -87939522 - L1MC/D LINE L1 -1997 5811 5672 2047 91 35 3 chr12 56342969 56343256 -87939233 + AluSp SINE Alu 3 298 -15 76 71 0 0 chr12 56343422 56343534 -87938955 + GC_rich Low_complexity Low_complexity 1 112 0 233 226 24 54 chr12 56343554 56343722 -87938767 + G-rich Low_complexity Low_complexity 3 165 0 249 280 0 40 chr12 56347217 56347292 -87935197 - L3 LINE CR1 -7 1570 1499 250 297 0 0 chr12 56348881 56348955 -87933534 + GA-rich Low_complexity Low_complexity 2 75 0 1473 107 11 96 chr12 56350788 56351069 -87931420 - AluSx SINE Alu 0 312 56 1073 99 0 0 chr12 56351070 56351212 -87931277 - AluSq/x SINE Alu -171 142 1 1978 95 14 28 chr12 56352202 56352517 -87929972 + AluSx SINE Alu 1 311 0 1737 180 75 13 chr12 56352517 56352905 -87929584 - MLT1C LTR MaLR -53 414 3 244 299 99 14 chr12 56352912 56353037 -87929452 - MIR SINE MIR -62 146 19 421 262 97 97 chr12 56353293 56353572 -87928917 - L2 LINE L2 -2 3311 3033 202 56 56 0 chr12 56354613 56354649 -87927840 + (CAGG)n Simple_repeat Simple_repeat 3 40 0 208 254 63 16 chr12 56359054 56359117 -87923372 - MER5A DNA MER1_type -81 108 43 269 50 0 25 chr12 56359597 56359637 -87922852 + (CCCCAG)n Simple_repeat Simple_repeat 2 40 0 255 189 0 0 chr12 56362475 56362528 -87919961 + CT-rich Low_complexity Low_complexity 3 55 0 2315 103 10 0 chr12 56362959 56363259 -87919230 + AluSx SINE Alu 1 303 -9 364 300 31 50 chr12 56366640 56366800 -87915689 + MIR SINE MIR 47 203 -59 754 179 93 0 chr12 56367721 56367872 -87914617 + FRAM SINE Alu 2 166 0 2708 34 0 0 chr12 56369691 56369989 -87912500 + AluY SINE Alu 1 298 -13 673 237 5 32 chr12 56372242 56372428 -87910061 - L3b LINE CR1 -219 1364 1184 1995 102 0 4 chr12 56372844 56373099 -87909390 + AluSx SINE Alu 51 304 -8 654 306 164 29 chr12 56373526 56374033 -87908456 - L2 LINE L2 -1 3312 2874 1778 170 31 3 chr12 56374033 56374327 -87908162 + AluJo SINE Alu 1 302 -10 2261 96 14 7 chr12 56374337 56374629 -87907860 + AluSg SINE Alu 3 296 -14 654 306 164 29 chr12 56374629 56374811 -87907678 - L2 LINE L2 -446 2867 2531 224 339 87 0 chr12 56375841 56375956 -87906533 - MIR SINE MIR -10 252 128 2542 41 0 7 chr12 56376343 56376636 -87905853 - AluY SINE Alu -20 291 1 193 319 44 18 chr12 56376637 56376750 -87905739 + L2 LINE L2 3123 3238 -75 186 326 218 14 chr12 56376829 56376976 -87905513 + MIR3 SINE MIR 8 184 -24 729 217 15 153 chr12 56377397 56377458 -87905031 - L1ME1 LINE L1 -5 6161 6093 815 174 0 0 chr12 56377458 56377590 -87904899 - FLAM_C SINE Alu -1 132 1 729 217 15 153 chr12 56377590 56377758 -87904731 - L1ME1 LINE L1 -73 6093 6006 2117 95 62 0 chr12 56377758 56378031 -87904458 - AluSg SINE Alu -20 290 1 729 217 15 153 chr12 56378031 56378192 -87904297 - L1ME1 LINE L1 -160 6006 5824 722 192 0 0 chr12 56378192 56378322 -87904167 - FRAM SINE Alu -9 167 38 1743 193 42 63 chr12 56378325 56378475 -87904014 - L1ME1 LINE L1 -347 5819 5667 1883 136 0 29 chr12 56378475 56378755 -87903734 - AluSx SINE Alu -6 306 35 1743 193 42 63 chr12 56378755 56379317 -87903172 - L1ME1 LINE L1 -499 5667 5176 1752 187 3 13 chr12 56379319 56379618 -87902871 + AluJo SINE Alu 1 296 -16 2323 83 3 20 chr12 56379623 56379924 -87902565 + AluSp SINE Alu 2 297 -16 2087 133 10 3 chr12 56379926 56380228 -87902261 + AluSx SINE Alu 1 304 -8 1658 183 4 7 chr12 56380277 56380551 -87901938 - AluJb SINE Alu -39 273 1 1152 189 115 73 chr12 56380563 56380687 -87901802 - L1ME1 LINE L1 -1379 4767 4650 2283 100 3 10 chr12 56380687 56380987 -87901502 + AluSp SINE Alu 1 298 -15 1152 189 115 73 chr12 56380987 56381339 -87901150 - L1ME1 LINE L1 -1496 4650 4271 1149 92 29 12 chr12 56381901 56382074 -87900415 + L1PA11 LINE L1 5999 6174 0 326 243 100 29 chr12 56382112 56382232 -87900257 + MIR SINE MIR 47 175 -54 2410 104 0 0 chr12 56382248 56382556 -87899933 + AluSg SINE Alu 1 308 -2 227 190 69 17 chr12 56382761 56382819 -87899670 - L2 LINE L2 -2 3270 3210 399 309 104 23 chr12 56383041 56383261 -87899228 + L2 LINE L2 2939 3176 -96 315 337 112 15 chr12 56383457 56383662 -87898827 - L2 LINE L2 -529 2785 2561 2188 99 34 3 chr12 56383670 56383964 -87898525 + AluSx SINE Alu 1 303 -9 1300 229 33 7 chr12 56383965 56384271 -87898218 - L1MD3 LINE L1 -12 7983 7670 1368 163 35 4 chr12 56384275 56384532 -87897957 - L1PA15 LINE L1 0 6165 5901 2310 121 0 0 chr12 56384533 56384840 -87897649 - AluSg SINE Alu -3 307 1 2097 117 0 42 chr12 56384842 56385150 -87897339 - AluSx SINE Alu -17 295 1 1757 171 17 17 chr12 56385152 56385450 -87897039 - AluJo SINE Alu -14 298 1 286 316 215 23 chr12 56385499 56385676 -87896813 + MIR SINE MIR 18 228 -34 223 178 0 22 chr12 56387321 56387366 -87895123 + GA-rich Low_complexity Low_complexity 5 48 0 2271 108 10 0 chr12 56388691 56388988 -87893501 + AluSx SINE Alu 1 300 -12 438 256 130 19 chr12 56389054 56389323 -87893166 + L1ME4a LINE L1 5741 6039 -82 2397 102 0 0 chr12 56389503 56389806 -87892683 + AluSx SINE Alu 1 303 -9 1631 178 23 30 chr12 56389855 56390158 -87892331 + AluJo SINE Alu 1 301 -11 993 32 0 0 chr12 56390227 56390351 -87892138 + L1PA5 LINE L1 6027 6150 -4 2314 88 3 3 chr12 56390617 56390911 -87891578 - AluSq SINE Alu -19 294 1 270 231 196 42 chr12 56391577 56391720 -87890769 + L2 LINE L2 3146 3310 -3 2275 39 0 4 chr12 56391766 56392025 -87890464 - AluY SINE Alu -14 297 40 645 171 8 8 chr12 56392032 56392149 -87890340 - FLAM_C SINE Alu -25 118 2 227 313 119 0 chr12 56392151 56392218 -87890271 - MIR SINE MIR -173 89 15 189 0 0 0 chr12 56392477 56392498 -87889991 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1105 118 0 0 chr12 56394108 56394260 -87888229 + AluSp/q SINE Alu 162 313 0 242 162 0 0 chr12 56394370 56394407 -87888082 + tRNA-Tyr-TAC tRNA tRNA 1 37 -39 854 211 4 59 chr12 56394415 56394685 -87887804 - L1MC4 LINE L1 0 8042 7788 1410 83 0 0 chr12 56394688 56394857 -87887632 + AluSg/x SINE Alu 134 302 -10 1647 182 0 31 chr12 56394867 56395158 -87887331 + AluJo SINE Alu 1 282 -30 2339 234 56 49 chr12 56395177 56395754 -87886735 - L1MC4 LINE L1 -244 7798 7227 2243 176 54 11 chr12 56395754 56396220 -87886269 + MER66B LTR ERV1 1 486 0 2339 234 56 49 chr12 56396220 56396249 -87886240 - L1MC4 LINE L1 -815 7227 7200 2096 135 0 29 chr12 56396249 56396561 -87885928 - AluSx SINE Alu -9 303 1 2339 234 56 49 chr12 56396561 56396810 -87885679 - L1MC4 LINE L1 -842 7200 6936 288 0 0 0 chr12 56396818 56396850 -87885639 + (TG)n Simple_repeat Simple_repeat 1 32 0 644 171 0 0 chr12 56396851 56396956 -87885533 - FLAM_C SINE Alu -28 115 11 2286 96 0 35 chr12 56396983 56397159 -87885330 - AluSx SINE Alu -11 301 139 2554 67 0 16 chr12 56397159 56397474 -87885015 - AluY SINE Alu -1 310 1 2286 96 0 35 chr12 56397474 56397609 -87884880 - AluSx SINE Alu -173 139 1 180 0 0 0 chr12 56397617 56397637 -87884852 + (T)n Simple_repeat Simple_repeat 1 20 0 813 242 0 16 chr12 56397640 56397822 -87884667 - L1MC4 LINE L1 -1130 6912 6734 2138 97 0 69 chr12 56398022 56398342 -87884147 - AluY SINE Alu -13 298 1 2320 80 20 3 chr12 56398399 56398701 -87883788 - AluSp SINE Alu -6 307 1 905 113 8 0 chr12 56398789 56398922 -87883567 + AluSg/x SINE Alu 177 310 -2 440 82 0 0 chr12 56399001 56399062 -87883427 + Alu SINE Alu 1 61 -257 259 216 0 0 chr12 56399192 56399243 -87883246 + AluJ/monomer SINE Alu 252 302 -6 430 246 89 37 chr12 56399385 56399561 -87882928 + MIR3 SINE MIR 10 202 -6 24 32 0 0 chr12 56399855 56399886 -87882603 + AT_rich Low_complexity Low_complexity 1 31 0 919 172 152 71 chr12 56399928 56400067 -87882422 + L1MB5 LINE L1 4601 4727 -1419 727 214 78 0 chr12 56400067 56400221 -87882268 + FRAM SINE Alu 1 166 0 919 172 152 71 chr12 56400221 56400377 -87882112 + L1MB5 LINE L1 4727 4920 -1226 2218 100 4 0 chr12 56400377 56400658 -87881831 + AluSq SINE Alu 1 282 -31 544 152 54 9 chr12 56400658 56400770 -87881719 - AluSc SINE Alu -7 302 186 4068 156 53 66 chr12 56400900 56401082 -87881407 + L1MB5 LINE L1 5257 5440 -734 2303 130 0 0 chr12 56401082 56401390 -87881099 + AluSx SINE Alu 3 310 -2 4068 156 53 66 chr12 56401390 56401814 -87880675 + L1MB5 LINE L1 5440 5849 -325 2306 108 0 0 chr12 56401814 56402111 -87880378 + AluSq SINE Alu 3 299 -14 4068 156 53 66 chr12 56402111 56402433 -87880056 + L1MB5 LINE L1 5849 6174 0 2021 124 36 16 chr12 56402535 56402841 -87879648 - AluSx SINE Alu 0 312 1 313 254 17 87 chr12 56402841 56402899 -87879590 - L1MC/D LINE L1 -2066 5742 5682 1795 163 3 13 chr12 56402899 56403205 -87879284 - AluJb SINE Alu -9 303 1 313 254 17 87 chr12 56403205 56403319 -87879170 - L1MC/D LINE L1 -2126 5682 5582 265 305 0 12 chr12 56403343 56403425 -87879064 - L1MC/D LINE L1 -2205 5603 5523 195 42 0 0 chr12 56404105 56404129 -87878360 + (CAGGG)n Simple_repeat Simple_repeat 3 26 0 183 194 0 0 chr12 56404607 56404638 -87877851 + L2 LINE L2 3218 3248 -24 525 236 99 63 chr12 56405120 56405311 -87877178 - MIR SINE MIR -12 250 53 1996 134 0 52 chr12 56405351 56405680 -87876809 - AluSx SINE Alu 0 312 1 706 153 0 16 chr12 56405680 56405794 -87876695 - FLAM_A SINE Alu -182 129 16 186 279 0 33 chr12 56405796 56405857 -87876632 - MIR3 SINE MIR -136 72 14 708 274 81 26 chr12 56405953 56406187 -87876302 + MIR SINE MIR 1 247 -15 378 345 0 7 chr12 56406511 56406650 -87875839 + L2 LINE L2 3127 3264 -8 2399 115 0 0 chr12 56407326 56407639 -87874850 + AluSq SINE Alu 1 313 0 2133 104 4 4 chr12 56407781 56408059 -87874430 + AluSx SINE Alu 1 278 -34 389 212 271 0 chr12 56409994 56410112 -87872377 + MER3 DNA MER1_type 6 155 -54 213 0 36 0 chr12 56410136 56410164 -87872325 + (TTG)n Simple_repeat Simple_repeat 2 180 0 956 210 0 6 chr12 56410164 56410324 -87872165 - FAM SINE Alu -141 170 1 233 252 122 28 chr12 56410324 56410431 -87872058 - MIR SINE MIR -56 206 90 393 22 0 0 chr12 56410454 56410500 -87871989 + (CA)n Simple_repeat Simple_repeat 2 47 0 549 167 202 0 chr12 56410849 56410963 -87871526 - MER3 DNA MER1_type -72 137 1 282 302 12 12 chr12 56410969 56411055 -87871434 - MIR SINE MIR -157 105 20 189 245 128 21 chr12 56414155 56414249 -87868240 + MIR3 SINE MIR 105 208 0 256 290 0 0 chr12 56414530 56414599 -87867890 - MIR SINE MIR -62 146 78 195 222 0 0 chr12 56414872 56414917 -87867572 + (TG)n Simple_repeat Simple_repeat 1 45 0 23 33 0 0 chr12 56416833 56416863 -87865626 + GC_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 56418080 56418105 -87864384 + GC_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 56419270 56419291 -87863198 + GC_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr12 56419780 56419826 -87862663 + GC_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr12 56419867 56419902 -87862587 + GC_rich Low_complexity Low_complexity 1 35 0 461 152 54 0 chr12 56420266 56420378 -87862111 + GA-rich Low_complexity Low_complexity 2 119 0 992 118 7 13 chr12 56421386 56421538 -87860951 - AluSp SINE Alu -162 151 1 1672 75 19 8 chr12 56421538 56421804 -87860685 + PABL_A-int LTR ERV1 631 899 -4116 * 3782 69 77 65 chr12 56421796 56422398 -87860091 + PABL_A-int LTR ERV1 1151 1779 -3586 2437 51 0 7 chr12 56422398 56422692 -87859797 + AluY SINE Alu 1 292 -19 3782 69 77 65 chr12 56422692 56422942 -87859547 + PABL_A-int LTR ERV1 1779 2025 -3340 965 189 0 0 chr12 56423109 56423284 -87859205 - AluSx SINE Alu -137 175 1 6708 71 14 4 chr12 56423284 56424316 -87858173 - PABL_A-int LTR ERV1 -1758 3257 2215 2303 79 0 22 chr12 56474425 56474740 -87807749 - AluSg1 SINE Alu 0 309 2 359 308 171 29 chr12 56474815 56475189 -87807300 - L2 LINE L2 -529 2785 2359 1681 81 5 0 chr12 56475707 56475928 -87806561 + AluSq SINE Alu 82 303 -10 267 358 75 12 chr12 56476017 56476190 -87806299 + MIR SINE MIR 8 191 -71 1542 149 0 0 chr12 56476193 56476421 -87806068 + AluSq SINE Alu 14 241 -72 1180 111 0 12 chr12 56476671 56476843 -87805646 - AluSq SINE Alu -6 307 138 955 201 7 77 chr12 56476951 56477224 -87805265 + AluSx SINE Alu 1 254 -58 1973 136 0 13 chr12 56477427 56477743 -87804746 + AluSx SINE Alu 1 312 0 758 167 0 56 chr12 56477801 56477945 -87804544 + FLAM_C SINE Alu 2 137 -6 2296 105 0 0 chr12 56477947 56478260 -87804229 + AluSq SINE Alu 1 313 0 2062 78 0 28 chr12 56478347 56478631 -87803858 - AluSc SINE Alu -20 289 14 32 0 0 0 chr12 56478651 56478683 -87803806 + AT_rich Low_complexity Low_complexity 1 32 0 892 59 101 0 chr12 56478683 56478802 -87803687 - AluYa5 SINE Alu -180 131 1 1187 102 0 0 chr12 56478802 56478969 -87803520 - AluY SINE Alu -13 298 132 1568 117 5 0 chr12 56478993 56479216 -87803273 + AluSp SINE Alu 1 224 -89 626 148 28 9 chr12 56479219 56479327 -87803162 + AluSq/x SINE Alu 2 111 -201 1675 174 0 3 chr12 56480214 56480502 -87801987 + AluJo SINE Alu 23 309 -3 229 284 0 52 chr12 56480522 56480638 -87801851 + A-rich Low_complexity Low_complexity 2 111 0 252 266 18 34 chr12 56480557 56480657 -87801832 + GA-rich Low_complexity Low_complexity 2 166 0 186 43 0 0 chr12 56481237 56481260 -87801229 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 396 0 0 0 chr12 56482229 56482273 -87800216 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 299 0 15 chr12 56483165 56483232 -87799257 + C-rich Low_complexity Low_complexity 4 69 0 206 330 0 28 chr12 56483289 56483395 -87799094 + C-rich Low_complexity Low_complexity 4 106 0 230 246 49 0 chr12 56483599 56483660 -87798829 + GA-rich Low_complexity Low_complexity 1 64 0 222 103 0 88 chr12 56484219 56484287 -87798202 + (CTG)n Simple_repeat Simple_repeat 1 62 0 255 190 0 0 chr12 56484611 56484669 -87797820 + (TG)n Simple_repeat Simple_repeat 2 59 0 207 0 0 0 chr12 56485867 56485890 -87796599 + (CAA)n Simple_repeat Simple_repeat 2 24 0 288 0 0 0 chr12 56486004 56486036 -87796453 + (GGA)n Simple_repeat Simple_repeat 1 32 0 207 315 0 33 chr12 56486394 56486486 -87796003 + GA-rich Low_complexity Low_complexity 2 90 0 2390 90 3 0 chr12 56487341 56487653 -87794836 + AluSq SINE Alu 1 313 0 2075 99 3 36 chr12 56489559 56489676 -87792813 + AluSx SINE Alu 1 120 -192 2257 50 7 0 chr12 56489676 56489986 -87792503 + AluY SINE Alu 1 312 0 2075 99 3 36 chr12 56489986 56490171 -87792318 + AluSx SINE Alu 120 294 -18 300 299 89 72 chr12 56490263 56490431 -87792058 - L2 LINE L2 0 3313 3136 2082 129 0 7 chr12 56490431 56490741 -87791748 + AluSg1 SINE Alu 1 308 -1 300 299 89 72 chr12 56490741 56490876 -87791613 - L2 LINE L2 -177 3136 3005 993 94 0 0 chr12 56490917 56491044 -87791445 + AluJb SINE Alu 7 133 -179 551 276 79 23 chr12 56491293 56491541 -87790948 + MIR SINE MIR 8 257 -5 1797 125 7 4 chr12 56491687 56491966 -87790523 + AluSx SINE Alu 28 307 -5 200 146 21 21 chr12 56492706 56492754 -87789735 + (CGGGG)n Simple_repeat Simple_repeat 2 49 0 2265 88 0 0 chr12 56494797 56495092 -87787397 - AluSx SINE Alu -17 295 1 1464 60 0 0 chr12 56495105 56495282 -87787207 - AluY SINE Alu -17 294 115 2233 83 3 16 chr12 56495282 56495596 -87786893 - AluY SINE Alu -1 310 1 324 0 0 0 chr12 56496073 56496109 -87786380 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 2168 99 3 0 chr12 56496170 56496463 -87786026 - AluSx SINE Alu -8 304 11 927 46 0 0 chr12 56496657 56496765 -87785724 + AluSp SINE Alu 29 136 -177 2348 81 3 3 chr12 56496767 56497076 -87785413 + AluY SINE Alu 1 309 -2 2195 103 0 3 chr12 56497163 56497463 -87785026 - AluSc SINE Alu -10 299 1 2213 105 0 3 chr12 56497558 56497863 -87784626 - AluSg SINE Alu -6 304 1 222 37 0 0 chr12 56497870 56497897 -87784592 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1991 120 0 0 chr12 56497899 56498183 -87784306 - AluSx SINE Alu -25 287 4 2310 75 9 35 chr12 56498438 56498617 -87783872 - AluY SINE Alu 0 311 142 2015 129 7 0 chr12 56498617 56498912 -87783577 - AluSg SINE Alu -13 297 1 2310 75 9 35 chr12 56498912 56499051 -87783438 - AluY SINE Alu -169 142 1 1817 140 7 7 chr12 56499054 56499347 -87783142 - AluSx SINE Alu -19 293 1 25 31 0 0 chr12 56499350 56499382 -87783107 + AT_rich Low_complexity Low_complexity 1 32 0 225 354 177 8 chr12 56499559 56499689 -87782800 + L2 LINE L2 3116 3267 -5 2261 98 0 3 chr12 56499982 56500288 -87782201 - AluSq SINE Alu -6 307 3 25 0 0 0 chr12 56500546 56500571 -87781918 + AT_rich Low_complexity Low_complexity 1 25 0 2302 61 3 0 chr12 56500574 56500869 -87781620 + AluY SINE Alu 1 296 -15 865 178 13 0 chr12 56500870 56501022 -87781467 + AluJo/FRAM SINE Alu 134 287 -25 1989 123 7 3 chr12 56501034 56501334 -87781155 + AluSx SINE Alu 1 301 -11 1919 153 0 3 chr12 56501342 56501637 -87780852 + AluSx SINE Alu 1 294 -18 2385 65 13 3 chr12 56501641 56501951 -87780538 + AluSp SINE Alu 1 313 0 36 23 0 0 chr12 56501951 56501994 -87780495 + AT_rich Low_complexity Low_complexity 1 43 0 2226 89 0 0 chr12 56501999 56502292 -87780197 + AluSg1 SINE Alu 1 293 -16 1518 177 6 47 chr12 56502321 56502466 -87780023 + AluJo SINE Alu 1 150 -162 2269 93 0 0 chr12 56502466 56502766 -87779723 + AluY SINE Alu 1 300 -11 1518 177 6 47 chr12 56502766 56502937 -87779552 + AluJo SINE Alu 150 304 -8 2090 96 14 3 chr12 56502974 56503267 -87779222 + AluSp SINE Alu 1 296 -17 326 98 0 49 chr12 56503273 56503367 -87779122 - Alu SINE Alu 0 300 243 289 274 97 32 chr12 56503564 56503596 -87778893 - FLAM_A SINE Alu -170 132 103 1840 167 0 7 chr12 56503596 56503896 -87778593 + AluSx SINE Alu 5 302 -10 289 274 97 32 chr12 56503896 56503987 -87778502 - FLAM_A SINE Alu -199 103 1 251 146 18 0 chr12 56503989 56504044 -87778445 + T-rich Low_complexity Low_complexity 3 58 0 * 266 183 14 0 chr12 56504033 56504104 -87778385 + CT-rich Low_complexity Low_complexity 1 72 0 786 210 0 0 chr12 56504105 56504243 -87778246 - FRAM SINE Alu -39 137 1 2147 103 0 7 chr12 56504270 56504572 -87777917 - AluSq SINE Alu -13 300 1 2149 111 7 3 chr12 56504595 56504902 -87777587 - AluSq SINE Alu -5 308 1 2024 124 0 10 chr12 56505151 56505313 -87777176 - AluSq SINE Alu -18 295 136 2242 87 0 7 chr12 56505313 56505622 -87776867 - AluSc SINE Alu -2 307 1 2024 124 0 10 chr12 56505622 56505757 -87776732 - AluSq SINE Alu -177 136 1 905 138 0 0 chr12 56505760 56505890 -87776599 - AluSp SINE Alu -181 132 3 232 343 144 30 chr12 56505989 56506190 -87776299 - MIR SINE MIR -27 235 12 236 333 13 0 chr12 56506258 56506333 -87776156 + L2 LINE L2 3188 3263 -9 2034 96 30 16 chr12 56506889 56507192 -87775297 + AluSq SINE Alu 3 309 -4 1965 81 63 0 chr12 56507193 56507477 -87775012 + AluSc SINE Alu 1 302 -7 188 152 0 0 chr12 56507478 56507511 -87774978 - L2 LINE L2 -686 2628 2596 30 27 0 0 chr12 56507578 56507615 -87774874 + GC_rich Low_complexity Low_complexity 1 37 0 921 156 26 0 chr12 56508555 56508709 -87773780 + FRAM SINE Alu 1 157 -19 24 53 0 0 chr12 56511859 56511897 -87770592 + AT_rich Low_complexity Low_complexity 1 38 0 819 118 0 0 chr12 56511959 56512069 -87770420 - AluJb SINE Alu -12 300 191 822 158 0 0 chr12 56512092 56512212 -87770277 - AluJb SINE Alu -98 214 95 902 236 45 84 chr12 56512344 56512679 -87769810 - L2 LINE L2 -86 3227 2906 2196 83 3 13 chr12 56513210 56513512 -87768977 - AluSg SINE Alu -10 300 2 260 309 193 30 chr12 56513587 56513950 -87768539 - L2 LINE L2 -529 2785 2364 1127 85 17 62 chr12 56514551 56514728 -87767761 + AluSx SINE Alu 1 169 -143 2248 48 4 0 chr12 56514728 56515000 -87767489 + AluY SINE Alu 18 290 -21 473 317 139 32 chr12 56515098 56515261 -87767228 - L2 LINE L2 0 3313 3169 989 111 0 15 chr12 56515261 56515396 -87767093 - FLAM_C SINE Alu 0 133 1 473 317 139 32 chr12 56515396 56515541 -87766948 - L2 LINE L2 -144 3169 2972 966 192 37 33 chr12 56515541 56515755 -87766734 + AluJb SINE Alu 87 301 -11 556 309 58 44 chr12 56515759 56516034 -87766455 - L2 LINE L2 -339 2975 2697 782 146 15 15 chr12 56516842 56516972 -87765517 - FLAM_A SINE Alu 0 133 4 432 265 77 0 chr12 56517633 56517750 -87764739 + MIR SINE MIR 53 178 -84 1192 126 5 63 chr12 56517809 56518031 -87764458 + AluJb SINE Alu 87 295 -17 2079 93 24 3 chr12 56518296 56518587 -87763902 - AluSx SINE Alu -15 297 1 1963 119 3 14 chr12 56518607 56518892 -87763597 - AluSx SINE Alu -30 282 1 692 260 109 0 chr12 56519054 56519246 -87763243 + MIR SINE MIR 47 259 -3 1088 150 32 0 chr12 56519978 56520165 -87762324 + MER75 DNA T2_type 1 193 -321 1237 136 5 0 chr12 56520185 56520369 -87762120 - AluJo SINE Alu -127 185 1 2170 96 7 0 chr12 56520413 56520706 -87761783 + AluSp SINE Alu 1 295 -18 537 127 25 0 chr12 56520867 56520946 -87761543 - AluJ/FLAM SINE Alu -230 82 2 1857 150 17 0 chr12 56521035 56521329 -87761160 - AluSq SINE Alu -14 299 1 2201 102 0 0 chr12 56521483 56521778 -87760711 - AluSx SINE Alu -13 299 5 230 245 0 53 chr12 56521789 56521883 -87760606 + MER117 DNA MER1_type 78 166 -31 598 227 28 0 chr12 56522490 56522631 -87759858 + MER103 DNA DNA 3 147 -19 2174 89 0 26 chr12 56523082 56523385 -87759104 - AluSx SINE Alu -17 295 1 1680 102 113 4 chr12 56523732 56523997 -87758492 - AluSx SINE Alu -16 296 3 2182 79 3 16 chr12 56525172 56525476 -87757013 - AluY SINE Alu -11 300 1 258 56 0 0 chr12 56525870 56525906 -87756583 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 770 117 9 0 chr12 56525906 56526017 -87756472 - FLAM_C SINE Alu -26 117 6 1939 142 0 31 chr12 56526254 56526546 -87755943 + AluSq SINE Alu 1 284 -29 413 21 0 0 chr12 56526546 56526593 -87755896 + (CA)n Simple_repeat Simple_repeat 2 48 0 1939 142 0 31 chr12 56526593 56526623 -87755866 + AluSq SINE Alu 284 313 0 192 310 17 0 chr12 56526646 56526704 -87755785 + MIR SINE MIR 93 151 -57 588 192 0 0 chr12 56526705 56526804 -87755685 + FLAM_A SINE Alu 1 99 -43 454 125 153 0 chr12 56526808 56526880 -87755609 - AluSg/x SINE Alu -16 296 214 2139 75 17 7 chr12 56527020 56527315 -87755174 + AluSq SINE Alu 1 298 -15 1006 147 12 6 chr12 56527315 56527478 -87755011 + AluJb SINE Alu 134 297 -15 1574 159 56 84 chr12 56527478 56527837 -87754652 - LTR47A LTR ERVL -101 351 3 817 151 93 7 chr12 56527874 56528013 -87754476 + AluY SINE Alu 4 154 -157 319 283 75 19 chr12 56528085 56528191 -87754298 + L1M4 LINE L1 5197 5308 -838 2085 99 10 3 chr12 56528198 56528490 -87753999 + AluSp SINE Alu 1 294 -19 229 125 0 25 chr12 56528504 56528544 -87753945 + Alu SINE Alu 105 143 -159 1553 191 11 4 chr12 56528547 56528825 -87753664 + AluJb SINE Alu 8 287 -25 1698 171 10 0 chr12 56528835 56529133 -87753356 + AluJo SINE Alu 1 301 -11 871 233 23 6 chr12 56529158 56529334 -87753155 - AluSg/x SINE Alu 0 312 134 28 29 0 0 chr12 56529334 56529369 -87753120 + AT_rich Low_complexity Low_complexity 1 35 0 776 175 8 0 chr12 56529370 56529496 -87752993 + AluJo/FLAM SINE Alu 2 128 -184 430 102 0 0 chr12 56529498 56529557 -87752932 + AluJ/FRAM SINE Alu 232 290 -22 2272 90 0 0 chr12 56529564 56529852 -87752637 + AluSc SINE Alu 17 304 -5 2028 114 3 0 chr12 56529858 56530148 -87752341 + AluSg SINE Alu 5 295 -15 2056 88 0 7 chr12 56530150 56530422 -87752067 + AluSc SINE Alu 1 270 -39 180 0 0 0 chr12 56530432 56530452 -87752037 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 942 115 0 0 chr12 56530573 56530703 -87751786 - AluSp SINE Alu -181 132 3 2262 100 0 3 chr12 56530709 56531019 -87751470 - AluY SINE Alu -2 309 1 604 175 10 0 chr12 56531020 56531117 -87751372 - FLAM_A SINE Alu -27 115 18 1953 146 3 0 chr12 56531164 56531459 -87751030 + AluSx SINE Alu 1 296 -16 198 288 163 0 chr12 56531709 56531789 -87750700 - L2 LINE L2 -8 3305 3213 2150 66 0 73 chr12 56531791 56531945 -87750544 + AluY SINE Alu 1 122 -189 2155 106 0 3 chr12 56531945 56532237 -87750252 + AluSg SINE Alu 1 291 -19 2150 66 0 73 chr12 56532237 56532399 -87750090 + AluY SINE Alu 122 294 -17 817 130 0 0 chr12 56532399 56532514 -87749975 + AluSg/x SINE Alu 178 292 -18 2346 77 0 6 chr12 56532517 56532828 -87749661 + AluY SINE Alu 1 309 -2 1451 149 0 93 chr12 56532830 56532965 -87749524 + AluJo SINE Alu 1 94 -218 2151 70 3 10 chr12 56532965 56533265 -87749224 + AluY SINE Alu 1 298 -13 1451 149 0 93 chr12 56533265 56533430 -87749059 + AluJo SINE Alu 94 273 -39 245 197 14 0 chr12 56533431 56533502 -87748987 + GA-rich Low_complexity Low_complexity 1 72 0 211 109 0 73 chr12 56533491 56533546 -87748943 + (GAAAA)n Simple_repeat Simple_repeat 3 53 0 * 239 275 187 0 chr12 56533548 56533639 -87748850 + FLAM_A SINE Alu 1 108 -25 877 174 7 0 chr12 56533639 56533783 -87748706 - AluSg/x SINE Alu -10 300 156 1913 138 3 7 chr12 56533952 56534257 -87748232 + AluSx SINE Alu 6 309 -3 180 250 226 0 chr12 56534367 56534451 -87748038 - L2 LINE L2 -3 3310 3208 2164 85 3 10 chr12 56534599 56534892 -87747597 + AluSc SINE Alu 1 291 -18 2259 88 0 0 chr12 56534893 56535187 -87747302 + AluY SINE Alu 1 294 -17 524 172 224 0 chr12 56535198 56535314 -87747175 + AluJo SINE Alu 1 142 -170 1964 138 0 3 chr12 56535315 56535612 -87746877 + AluSx SINE Alu 1 296 -16 2118 97 17 10 chr12 56535614 56535912 -87746577 + AluSx SINE Alu 2 301 -11 280 252 99 0 chr12 56536290 56536401 -87746088 + MIR SINE MIR 97 218 -44 2181 117 3 0 chr12 56536601 56536910 -87745579 - AluSx SINE Alu -2 310 1 2166 119 3 0 chr12 56537216 56537519 -87744970 - AluSp SINE Alu -9 304 1 1875 143 0 3 chr12 56537525 56537819 -87744670 - AluJb SINE Alu -18 294 2 297 274 87 8 chr12 56537869 56538012 -87744477 + MIR SINE MIR 48 198 -64 230 233 7 82 chr12 56539675 56539821 -87742668 + G-rich Low_complexity Low_complexity 3 137 0 26 82 0 0 chr12 56539841 56539902 -87742587 + GC_rich Low_complexity Low_complexity 1 61 0 2250 80 6 10 chr12 56540291 56540603 -87741886 - AluSp SINE Alu -2 311 1 538 159 66 53 chr12 56543239 56543313 -87739176 - MER58C DNA MER1_type -2209 211 139 2476 50 0 0 chr12 56543313 56543613 -87738876 - AluY SINE Alu -11 300 1 2268 109 0 3 chr12 56543617 56543930 -87738559 - AluSx SINE Alu 0 312 1 538 159 66 53 chr12 56543930 56544001 -87738488 - MER58C DNA MER1_type -2283 137 59 1725 168 20 0 chr12 56544049 56544346 -87738143 + AluSx SINE Alu 1 303 -9 2086 107 3 0 chr12 56544356 56544646 -87737843 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr12 56544654 56544674 -87737815 + (GAAA)n Simple_repeat Simple_repeat 3 22 0 602 117 29 19 chr12 56544674 56544770 -87737719 - MER3 DNA MER1_type -20 142 43 2114 53 0 4 chr12 56545098 56545360 -87737129 + AluY SINE Alu 47 307 -4 204 179 0 0 chr12 56545411 56545450 -87737039 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 2364 78 0 3 chr12 56546692 56546998 -87735491 - AluY SINE Alu -6 305 1 2212 89 10 0 chr12 56546998 56547290 -87735199 - AluSx SINE Alu -17 295 1 320 256 202 39 chr12 56548410 56548613 -87733876 + MIR SINE MIR 27 262 0 2036 114 21 0 chr12 56550646 56550936 -87731553 + AluSx SINE Alu 1 296 -16 2096 89 7 4 chr12 56550948 56551229 -87731260 + AluSc SINE Alu 13 294 -15 2319 94 0 0 chr12 56553588 56553895 -87728594 - AluSg SINE Alu -3 307 1 1776 122 50 0 chr12 56554125 56554404 -87728085 - AluJo SINE Alu -19 293 1 2145 97 0 19 chr12 56556029 56556337 -87726152 - AluSg SINE Alu -8 302 1 2071 132 0 0 chr12 56556771 56557075 -87725414 + AluSx SINE Alu 1 304 -8 302 257 103 86 chr12 56558073 56558248 -87724241 + MER5B DNA MER1_type 1 178 0 2158 94 3 7 chr12 56558479 56558777 -87723712 + AluSx SINE Alu 2 298 -14 2249 86 3 3 chr12 56560532 56560833 -87721656 - AluSg SINE Alu 0 310 10 1917 116 47 0 chr12 56561324 56561601 -87720888 - AluSx SINE Alu -22 290 1 1946 134 23 0 chr12 56561604 56561903 -87720586 - AluSq SINE Alu -7 306 1 205 335 161 48 chr12 56562289 56562605 -87719884 + L2 LINE L2 2921 3272 0 229 256 51 68 chr12 56562941 56563058 -87719431 + MIR SINE MIR 102 216 -46 2437 66 0 0 chr12 56563464 56563767 -87718722 - AluY SINE Alu -8 303 1 2196 100 3 0 chr12 56563899 56564198 -87718291 - AluSx SINE Alu -1 311 12 1313 148 49 33 chr12 56564233 56564477 -87718012 - AluJo SINE Alu -21 291 44 2514 39 3 0 chr12 56564486 56564791 -87717698 - AluYa5 SINE Alu -5 306 1 326 324 72 0 chr12 56565299 56565410 -87717079 + MIR SINE MIR 16 134 -74 1377 167 63 0 chr12 56566027 56566266 -87716223 - AluJb SINE Alu -58 254 1 198 256 200 22 chr12 56566953 56567043 -87715446 - MIR SINE MIR -153 109 4 2504 47 0 7 chr12 56569901 56570202 -87712287 + AluSc SINE Alu 1 299 -10 373 287 23 0 chr12 56570461 56570590 -87711899 - L1ME LINE L1 -297 5824 5693 1296 160 60 24 chr12 56570617 56570867 -87711622 - AluJo SINE Alu -53 259 1 1148 150 0 39 chr12 56570867 56571074 -87711415 - AluSp SINE Alu -3 310 112 917 174 68 0 chr12 56571093 56571254 -87711235 + FAM SINE Alu 2 173 -2 2049 84 7 30 chr12 56571256 56571553 -87710936 + AluSx SINE Alu 1 290 -22 242 231 0 39 chr12 56571564 56571642 -87710847 - L1M4 LINE L1 -2450 3696 3622 945 71 6 137 chr12 56571670 56571853 -87710636 + AluSq SINE Alu 137 295 -18 2051 101 31 3 chr12 56571921 56572208 -87710281 + AluSg SINE Alu 5 299 -11 1680 102 113 4 chr12 56573383 56573648 -87708841 + AluSx SINE Alu 3 296 -16 2217 71 0 0 chr12 56573995 56574299 -87708190 + AluSg SINE Alu 1 304 0 455 292 58 46 chr12 56575286 56575526 -87706963 + L2 LINE L2 2386 2628 -686 2153 69 49 3 chr12 56575527 56575815 -87706674 - AluSc SINE Alu -8 301 1 558 152 66 53 chr12 56577885 56577959 -87704530 - MER58C DNA MER1_type -2209 211 139 2524 43 0 0 chr12 56577959 56578259 -87704230 - AluY SINE Alu -11 300 1 2268 109 0 3 chr12 56578263 56578576 -87703913 - AluSx SINE Alu 0 312 1 558 152 66 53 chr12 56578576 56578647 -87703842 - MER58C DNA MER1_type -2283 137 59 1725 168 20 0 chr12 56578695 56578992 -87703497 + AluSx SINE Alu 1 303 -9 2124 114 3 0 chr12 56579002 56579300 -87703189 + AluSx SINE Alu 1 299 -13 2117 91 7 3 chr12 56579303 56579601 -87702888 + AluY SINE Alu 1 299 -12 280 175 18 18 chr12 56582387 56582444 -87700045 - L2 LINE L2 -8 3305 3249 26 0 0 0 chr12 56582718 56582744 -87699745 + AT_rich Low_complexity Low_complexity 1 26 0 2064 109 3 3 chr12 56582900 56583203 -87699286 + AluSx SINE Alu 1 303 -9 1520 123 113 17 chr12 56585004 56585297 -87697192 + MER1B DNA MER1_type 18 338 -1 182 311 176 0 chr12 56585309 56585383 -87697106 + MER5A DNA MER1_type 4 90 -99 481 302 78 11 chr12 56585586 56585765 -87696724 - L1M4 LINE L1 -2739 3407 3217 386 236 79 0 chr12 56585757 56585846 -87696643 + L1MC4 LINE L1 6608 6703 -1339 * 2203 99 0 0 chr12 56585873 56586166 -87696323 - AluY SINE Alu -18 293 1 2042 129 0 26 chr12 56586166 56586476 -87696013 - AluSx SINE Alu -10 302 1 1010 89 7 0 chr12 56586476 56586611 -87695878 - AluSq/x SINE Alu -176 136 1 2178 112 3 0 chr12 56586622 56586918 -87695571 - AluSx SINE Alu -15 297 1 337 274 51 68 chr12 56586927 56587044 -87695445 - L1M4 LINE L1 -2933 3213 3099 304 238 189 0 chr12 56588890 56589012 -87693477 - MIR SINE MIR -7 255 111 240 324 51 84 chr12 56588992 56589179 -87693310 - L2 LINE L2 -483 2831 2639 * 2170 114 0 19 chr12 56589179 56589494 -87692995 + AluSc SINE Alu 1 309 0 1959 128 23 3 chr12 56589496 56589800 -87692689 + AluSg SINE Alu 1 310 0 240 324 51 84 chr12 56589800 56589817 -87692672 - L2 LINE L2 -676 2638 2622 1569 168 26 32 chr12 56589817 56590127 -87692362 + AluJb SINE Alu 3 310 -2 240 324 51 84 chr12 56590127 56590152 -87692337 - L2 LINE L2 -692 2622 2598 2127 99 3 30 chr12 56590152 56590285 -87692204 + AluSg SINE Alu 1 136 -174 2480 61 0 6 chr12 56590285 56590597 -87691892 + AluY SINE Alu 1 310 -1 2127 99 3 30 chr12 56590597 56590767 -87691722 + AluSg SINE Alu 136 296 -14 240 324 51 84 chr12 56590767 56590903 -87691586 - L2 LINE L2 -716 2598 2473 298 303 55 9 chr12 56590925 56591034 -87691455 - MIR SINE MIR -2 260 147 1147 170 16 0 chr12 56591039 56591233 -87691256 - AluJb SINE Alu -13 299 103 429 20 0 0 chr12 56591233 56591283 -87691206 + (TG)n Simple_repeat Simple_repeat 2 51 0 1318 143 186 13 chr12 56591283 56591520 -87690969 - AluSc SINE Alu -19 280 3 281 311 91 0 chr12 56591520 56591652 -87690837 - MIR SINE MIR -106 156 13 200 402 21 26 chr12 56591698 56591892 -87690597 - L2 LINE L2 -926 2388 2196 659 244 57 76 chr12 56591951 56592198 -87690291 + L1M4 LINE L1 5438 5683 -491 1468 169 30 34 chr12 56592211 56592506 -87689983 - AluJb SINE Alu -17 295 2 1869 107 25 4 chr12 56592561 56592841 -87689648 + AluSc SINE Alu 23 308 -1 2289 86 10 0 chr12 56592848 56593150 -87689339 + AluSp SINE Alu 1 305 -8 289 313 75 30 chr12 56593858 56593992 -87688497 + MIR SINE MIR 117 256 -6 2119 86 10 7 chr12 56595058 56595350 -87687139 + AluSq SINE Alu 2 294 -19 1880 139 10 0 chr12 56595351 56595653 -87686836 - AluSx SINE Alu -7 305 1 257 257 124 29 chr12 56595658 56595763 -87686726 - MIR SINE MIR -42 220 106 1383 165 79 14 chr12 56595812 56596090 -87686399 + AluJo SINE Alu 1 300 -12 2263 79 3 16 chr12 56596090 56596407 -87686082 + AluSp SINE Alu 1 313 0 1383 165 79 14 chr12 56596407 56596419 -87686070 + AluJo SINE Alu 300 310 -2 207 200 44 0 chr12 56596419 56596464 -87686025 + GA-rich Low_complexity Low_complexity 2 48 0 182 311 176 0 chr12 56596957 56597031 -87685458 - MER5A DNA MER1_type -99 90 4 1520 123 113 17 chr12 56597043 56597336 -87685153 - MER1B DNA MER1_type -1 338 18 2064 109 3 3 chr12 56599137 56599440 -87683049 - AluSx SINE Alu -9 303 1 26 0 0 0 chr12 56599596 56599622 -87682867 + AT_rich Low_complexity Low_complexity 1 26 0 280 175 18 18 chr12 56599896 56599953 -87682536 + L2 LINE L2 3249 3305 -8 2226 102 0 7 chr12 56602739 56603042 -87679447 - AluSq SINE Alu -12 301 1 1816 135 6 50 chr12 56603042 56603361 -87679128 - AluSx SINE Alu -7 305 1 805 127 0 60 chr12 56603370 56603520 -87678969 - FRAM SINE Alu -24 152 12 2130 107 0 7 chr12 56604198 56604497 -87677992 + AluSg1 SINE Alu 1 297 -12 1961 124 10 3 chr12 56604653 56604943 -87677546 + AluSg SINE Alu 1 292 -18 200 364 0 0 chr12 56605561 56605627 -87676862 + CT-rich Low_complexity Low_complexity 1 66 0 28 29 0 0 chr12 56606548 56606583 -87675906 + AT_rich Low_complexity Low_complexity 1 35 0 1956 114 36 19 chr12 56606591 56606899 -87675590 - AluSq SINE Alu 0 313 1 2046 100 7 23 chr12 56607238 56607537 -87674952 + AluSx SINE Alu 12 305 -7 1049 131 28 17 chr12 56607537 56607713 -87674776 + AluSg/x SINE Alu 134 311 -1 2524 174 18 8 chr12 56607739 56608229 -87674260 + L1MB8 LINE L1 5616 6110 -68 1176 102 5 56 chr12 56608230 56608363 -87674126 + AluSc SINE Alu 1 139 -170 2303 60 23 3 chr12 56608363 56608662 -87673827 + AluSp SINE Alu 2 306 -7 2408 65 7 0 chr12 56608662 56608970 -87673519 + AluY SINE Alu 1 310 -1 1176 102 5 56 chr12 56608970 56609031 -87673458 + AluSc SINE Alu 137 186 -123 444 249 76 92 chr12 56609041 56609463 -87673026 + L1ME4a LINE L1 5658 6072 -49 24 32 0 0 chr12 56609680 56609711 -87672778 + AT_rich Low_complexity Low_complexity 1 31 0 2128 124 7 0 chr12 56609711 56610018 -87672471 + AluSx SINE Alu 1 309 -3 1742 100 115 7 chr12 56610438 56610717 -87671772 + AluSg1 SINE Alu 1 309 0 790 111 0 0 chr12 56610718 56610826 -87671663 + AluSg/x SINE Alu 190 297 -13 1857 150 17 0 chr12 56610980 56611274 -87671215 + AluSq SINE Alu 1 299 -14 574 197 86 0 chr12 56611362 56611479 -87671010 + FLAM_C SINE Alu 1 127 -6 2064 93 0 4 chr12 56611698 56612001 -87670488 - AluSc SINE Alu 0 304 3 1259 98 64 10 chr12 56612001 56612204 -87670285 - AluY SINE Alu -15 296 83 413 143 0 0 chr12 56612204 56612260 -87670229 - AluSg/x SINE Alu -62 248 193 396 0 0 0 chr12 56612393 56612437 -87670052 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 299 0 15 chr12 56613329 56613396 -87669093 + C-rich Low_complexity Low_complexity 4 69 0 206 330 0 28 chr12 56613453 56613559 -87668930 + C-rich Low_complexity Low_complexity 4 106 0 230 246 49 0 chr12 56613763 56613824 -87668665 + GA-rich Low_complexity Low_complexity 1 64 0 222 103 0 88 chr12 56614383 56614451 -87668038 + (CTG)n Simple_repeat Simple_repeat 1 62 0 255 190 0 0 chr12 56614775 56614833 -87667656 + (TG)n Simple_repeat Simple_repeat 2 59 0 207 0 0 0 chr12 56616031 56616054 -87666435 + (CAA)n Simple_repeat Simple_repeat 2 24 0 288 0 0 0 chr12 56616168 56616200 -87666289 + (GGA)n Simple_repeat Simple_repeat 1 32 0 207 315 0 33 chr12 56616558 56616650 -87665839 + GA-rich Low_complexity Low_complexity 2 90 0 2532 90 3 0 chr12 56617505 56617817 -87664672 + AluSq SINE Alu 1 313 0 2212 99 3 36 chr12 56619723 56619840 -87662649 + AluSx SINE Alu 1 120 -192 2395 50 7 0 chr12 56619840 56620150 -87662339 + AluY SINE Alu 1 312 0 2212 99 3 36 chr12 56620150 56620335 -87662154 + AluSx SINE Alu 120 294 -18 302 306 89 72 chr12 56620427 56620595 -87661894 - L2 LINE L2 0 3313 3136 2214 129 0 7 chr12 56620595 56620905 -87661584 + AluSg1 SINE Alu 1 308 -1 302 306 89 72 chr12 56620905 56621040 -87661449 - L2 LINE L2 -177 3136 3005 1956 148 10 29 chr12 56621081 56621392 -87661097 + AluJb SINE Alu 7 311 -1 2351 104 10 0 chr12 56621397 56621704 -87660785 + AluSx SINE Alu 3 312 0 2031 110 24 3 chr12 56621858 56622149 -87660340 - AluSq SINE Alu -16 297 1 443 164 168 1 chr12 56622165 56622306 -87660183 + L1MC4a LINE L1 6883 7064 -721 2516 52 7 0 chr12 56622306 56622595 -87659894 - AluY SINE Alu -19 292 2 2238 95 0 10 chr12 56622711 56623006 -87659483 - AluSq SINE Alu -21 292 1 25 0 0 0 chr12 56623261 56623286 -87659203 + AT_rich Low_complexity Low_complexity 1 25 0 2482 61 0 0 chr12 56623289 56623585 -87658904 + AluY SINE Alu 1 296 -15 927 178 13 0 chr12 56623586 56623738 -87658751 + AluJo/FRAM SINE Alu 134 287 -25 2115 123 7 3 chr12 56623750 56624050 -87658439 + AluSx SINE Alu 1 301 -11 2047 153 0 3 chr12 56624058 56624353 -87658136 + AluSx SINE Alu 1 294 -18 2531 65 13 3 chr12 56624357 56624667 -87657822 + AluSp SINE Alu 1 313 0 36 23 0 0 chr12 56624667 56624710 -87657779 + AT_rich Low_complexity Low_complexity 1 43 0 2329 92 0 0 chr12 56624715 56625008 -87657481 + AluSg1 SINE Alu 1 293 -16 1624 167 6 57 chr12 56625037 56625182 -87657307 + AluJo SINE Alu 1 123 -189 2402 93 0 0 chr12 56625182 56625482 -87657007 + AluY SINE Alu 1 300 -11 1624 167 6 57 chr12 56625482 56625653 -87656836 + AluJo SINE Alu 123 301 -11 2229 96 14 3 chr12 56625690 56625983 -87656506 + AluSp SINE Alu 1 296 -17 680 68 0 29 chr12 56625989 56626125 -87656364 - AluY SINE Alu 0 311 202 2466 84 0 0 chr12 56627739 56628035 -87654454 - AluSg SINE Alu -14 296 1 2545 62 0 7 chr12 56628045 56628354 -87654135 - AluSc SINE Alu -2 307 1 2213 109 0 7 chr12 56628357 56628651 -87653838 - AluSx SINE Alu -13 299 8 266 357 175 13 chr12 56628788 56629074 -87653415 + L2 LINE L2 2209 2552 -762 2572 60 0 0 chr12 56629074 56629374 -87653115 - AluSc SINE Alu -9 300 1 266 357 175 13 chr12 56629374 56629401 -87653088 + L2 LINE L2 2552 2573 -741 2217 115 3 3 chr12 56629966 56630262 -87652227 + AluSx SINE Alu 1 296 -16 410 97 274 97 chr12 56630262 56630367 -87652122 - FLAM_C SINE Alu -173 129 1 2551 67 0 0 chr12 56630840 56631139 -87651350 + AluSx SINE Alu 1 299 -13 997 55 0 96 chr12 56631733 56631820 -87650669 + AluSc SINE Alu 1 70 -239 2744 36 0 0 chr12 56631820 56632125 -87650364 + AluY SINE Alu 1 305 -6 997 55 0 96 chr12 56632125 56632183 -87650306 + AluSc SINE Alu 70 132 -177 713 215 97 57 chr12 56632201 56632332 -87650157 + MIR SINE MIR 21 166 -96 2370 104 0 0 chr12 56632332 56632639 -87649850 + AluSc SINE Alu 1 307 -2 713 215 97 57 chr12 56632639 56632735 -87649754 + MIR SINE MIR 166 257 -5 2451 69 0 0 chr12 56632812 56633102 -87649387 + AluSq SINE Alu 13 302 -11 189 147 0 0 chr12 56635724 56635758 -87646731 + (TG)n Simple_repeat Simple_repeat 2 35 0 1836 158 14 0 chr12 56635839 56636124 -87646365 + AluJb SINE Alu 1 289 -23 1872 151 7 7 chr12 56636132 56636424 -87646065 + AluJb SINE Alu 1 292 -20 31 65 0 13 chr12 56636542 56636597 -87645892 + AT_rich Low_complexity Low_complexity 1 56 -20 2217 109 0 20 chr12 56636597 56636900 -87645589 - AluSx SINE Alu -15 297 1 31 65 0 13 chr12 56636900 56636921 -87645568 + AT_rich Low_complexity Low_complexity 56 76 0 358 267 129 46 chr12 56636958 56637175 -87645314 - L2 LINE L2 0 3313 3079 261 0 0 0 chr12 56637311 56637340 -87645149 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2059 112 14 4 chr12 56637342 56637620 -87644869 - AluSx SINE Alu -31 281 1 193 308 196 0 chr12 56637623 56637730 -87644759 - MIR SINE MIR -48 214 87 196 302 35 12 chr12 56638116 56638202 -87644287 + L2 LINE L2 3220 3307 -6 452 327 97 13 chr12 56638387 56638613 -87643876 + MIR SINE MIR 2 246 -16 2463 81 0 0 chr12 56639028 56639337 -87643152 + AluY SINE Alu 1 309 -2 1625 167 26 32 chr12 56641661 56641834 -87640655 - AluJo SINE Alu -1 311 139 2519 58 0 0 chr12 56641834 56642125 -87640364 - AluY SINE Alu -16 295 5 1625 167 26 32 chr12 56642125 56642263 -87640226 - AluJo SINE Alu -173 139 2 2082 74 0 26 chr12 56642271 56642559 -87639930 - AluY SINE Alu 0 311 36 1826 159 45 3 chr12 56642569 56642859 -87639630 - AluJo SINE Alu -10 302 1 2328 98 0 7 chr12 56643171 56643476 -87639013 - AluSg SINE Alu -7 303 1 2565 74 0 6 chr12 56643476 56643788 -87638701 - AluY SINE Alu -1 310 1 2045 125 32 0 chr12 56643973 56644254 -87638235 - AluSx SINE Alu -22 290 1 256 286 205 9 chr12 56644310 56644422 -87638067 - MIR SINE MIR -79 183 50 2095 103 51 0 chr12 56644434 56644726 -87637763 + AluSx SINE Alu 1 307 -5 2098 109 44 0 chr12 56644727 56645021 -87637468 + AluSg SINE Alu 3 309 -1 451 87 14 14 chr12 56645092 56645161 -87637328 + AluS SINE Alu 2 70 -243 1436 166 0 116 chr12 56645275 56645619 -87636870 + AluJo SINE Alu 1 304 -8 5697 75 33 88 chr12 56645704 56646371 -87636118 - L1PA10 LINE L1 0 6168 5466 2085 113 0 61 chr12 56646371 56646698 -87635791 - AluSx SINE Alu -5 307 1 5697 75 33 88 chr12 56646698 56646828 -87635661 - L1PA10 LINE L1 -702 5466 5330 2884 10 0 3 chr12 56646828 56647140 -87635349 - AluYa5 SINE Alu 0 311 1 5697 75 33 88 chr12 56647140 56647191 -87635298 - L1PA10 LINE L1 -838 5330 5278 2395 71 0 20 chr12 56647191 56647488 -87635001 - AluY SINE Alu -20 291 1 5697 75 33 88 chr12 56647488 56647521 -87634968 - L1PA10 LINE L1 -890 5278 5245 5798 44 8 1 chr12 56647521 56648185 -87634304 - SVA Other Other -1 1385 718 5697 75 33 88 chr12 56648185 56648468 -87634021 - L1PA10 LINE L1 -923 5245 5039 303 150 338 0 chr12 56648463 56648543 -87633946 - L1MD3 LINE L1 -14 7981 7875 * 1716 199 0 3 chr12 56648556 56648847 -87633642 + AluSx SINE Alu 1 290 -22 2384 94 0 3 chr12 56648849 56649157 -87633332 + AluY SINE Alu 1 307 -4 1869 139 32 7 chr12 56649294 56649575 -87632914 + AluSg SINE Alu 1 288 -22 202 156 62 16 chr12 56649748 56649812 -87632677 + (CCGCG)n Simple_repeat Simple_repeat 4 70 0 * 392 214 35 29 chr12 56649783 56650073 -87632416 + (CGCGG)n Simple_repeat Simple_repeat 1 291 0 497 245 42 25 chr12 56650120 56650334 -87632155 + L1MC5 LINE L1 7262 7495 -547 2388 109 3 0 chr12 56650436 56650747 -87631742 + AluSx SINE Alu 1 312 0 379 276 86 17 chr12 56650747 56650863 -87631626 + L1MC5 LINE L1 7614 7737 -224 2357 100 3 0 chr12 56650868 56651168 -87631321 + AluSc SINE Alu 1 301 -8 1073 201 0 0 chr12 56651169 56651348 -87631141 + AluJb SINE Alu 134 312 0 1457 186 8 16 chr12 56651357 56651615 -87630874 + AluJb SINE Alu 1 256 -56 2135 93 26 0 chr12 56651772 56652042 -87630447 + AluSp SINE Alu 1 277 -36 413 107 0 0 chr12 56652042 56652098 -87630391 - Alu SINE Alu -261 57 2 286 216 0 0 chr12 56652438 56652489 -87630000 + MIR SINE MIR 16 66 -196 1574 130 54 4 chr12 56652513 56652752 -87629737 - AluSg SINE Alu -59 251 1 469 214 0 31 chr12 56652894 56652975 -87629514 - AluJo SINE Alu -98 214 135 2245 116 3 0 chr12 56652975 56653276 -87629213 - AluSp SINE Alu -11 302 1 469 214 0 31 chr12 56653276 56653292 -87629197 - AluJo SINE Alu -177 135 120 497 262 36 36 chr12 56653355 56653592 -87628897 - L1MC5 LINE L1 -547 7495 7262 1039 73 0 0 chr12 56653610 56653734 -87628755 + AluSp/q SINE Alu 169 292 -21 1236 187 102 4 chr12 56653750 56653985 -87628504 - AluJo SINE Alu -54 258 1 276 30 0 0 chr12 56654011 56654044 -87628445 + (TA)n Simple_repeat Simple_repeat 1 33 0 392 187 73 101 chr12 56654051 56654381 -87628108 - L1MC4 LINE L1 -742 7219 6961 260 176 59 0 chr12 56654806 56655016 -87627473 + (CCCG)n Simple_repeat Simple_repeat 1 222 0 24 0 0 0 chr12 56657941 56657965 -87624524 + AT_rich Low_complexity Low_complexity 1 24 0 2191 91 31 7 chr12 56658852 56659139 -87623350 + AluSg SINE Alu 1 294 -16 1665 176 27 24 chr12 56659723 56660019 -87622470 - AluJo SINE Alu -15 297 1 1571 194 66 0 chr12 56660024 56660313 -87622176 - AluJo SINE Alu -4 308 1 26 0 0 0 chr12 56660313 56660339 -87622150 + AT_rich Low_complexity Low_complexity 1 26 0 2242 106 3 0 chr12 56660592 56660895 -87621594 - AluSq SINE Alu -9 304 1 2229 121 3 6 chr12 56660961 56661274 -87621215 - AluSx SINE Alu 0 312 1 377 117 33 0 chr12 56661311 56661371 -87621118 - Alu SINE Alu -6 296 235 233 79 26 0 chr12 56661482 56661520 -87620969 - MER58 DNA MER1_type -118 97 59 1814 171 20 0 chr12 56661568 56661866 -87620623 + AluSx SINE Alu 1 304 -8 2394 100 0 10 chr12 56661876 56662187 -87620302 + AluSq SINE Alu 1 308 -5 2112 105 54 0 chr12 56662193 56662488 -87620001 + AluSp SINE Alu 3 313 0 676 154 0 9 chr12 56662489 56662599 -87619890 - AluJo/FLAM SINE Alu -195 117 9 2137 105 6 19 chr12 56662652 56662965 -87619524 + AluSg SINE Alu 1 309 -1 2192 109 0 20 chr12 56662981 56663118 -87619371 + AluSq SINE Alu 2 140 -173 2787 10 3 3 chr12 56663118 56663424 -87619065 + AluYa5 SINE Alu 1 306 -5 2192 109 0 20 chr12 56663424 56663500 -87618989 + AluSq SINE Alu 140 297 -16 617 102 0 0 chr12 56663500 56663588 -87618901 + AluSp/q SINE Alu 210 297 -16 1479 159 37 30 chr12 56663822 56664118 -87618371 + L1PA16 LINE L1 5808 6105 -61 2064 75 81 34 chr12 56664147 56664442 -87618047 + AluSc SINE Alu 1 309 0 2094 95 3 3 chr12 56665075 56665369 -87617120 - AluSx SINE Alu -18 294 1 24 0 0 0 chr12 56665484 56665508 -87616981 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr12 56666057 56666080 -87616409 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 706 41 224 0 chr12 56666163 56666261 -87616228 + AluSc SINE Alu 17 136 -173 2013 103 45 0 chr12 56666261 56666553 -87615936 + AluSq SINE Alu 1 305 -8 1855 148 7 0 chr12 56666781 56667072 -87615417 - AluJb SINE Alu -19 293 1 2182 84 0 3 chr12 56667772 56668056 -87614433 - AluY SINE Alu -18 293 11 431 198 66 0 chr12 56668175 56668266 -87614223 + MIR3 SINE MIR 111 207 -1 2058 100 7 10 chr12 56668519 56668829 -87613660 + AluSg SINE Alu 1 309 -1 1989 113 13 16 chr12 56668981 56669290 -87613199 + AluSx SINE Alu 1 308 -4 2310 84 0 0 chr12 56669841 56670137 -87612352 - AluSg SINE Alu -14 296 1 2368 65 0 7 chr12 56670147 56670456 -87612033 - AluSc SINE Alu -2 307 1 1313 180 74 18 chr12 56670459 56670742 -87611747 - AluJo SINE Alu -13 299 1 26 0 0 0 chr12 56670742 56670768 -87611721 + AT_rich Low_complexity Low_complexity 1 26 0 2080 106 3 0 chr12 56671021 56671324 -87611165 - AluSq SINE Alu -9 304 1 2064 119 3 7 chr12 56671388 56671698 -87610791 - AluSx SINE Alu -3 309 1 1940 129 10 3 chr12 56671735 56672030 -87610459 - AluSx SINE Alu -14 298 2 1401 155 23 36 chr12 56672833 56673136 -87609353 - AluJb SINE Alu -1 311 13 1370 153 37 47 chr12 56673237 56673537 -87608952 - AluJo SINE Alu -15 297 1 281 284 42 32 chr12 56673672 56673767 -87608722 + L2 LINE L2 3212 3307 -6 1480 179 11 4 chr12 56674826 56675100 -87607389 - AluJb SINE Alu -36 276 1 2125 96 0 23 chr12 56675940 56676243 -87606246 + AluSx SINE Alu 11 306 -6 1001 132 29 17 chr12 56676243 56676417 -87606072 + AluSg/x SINE Alu 132 307 -3 2637 170 22 10 chr12 56676445 56676934 -87605555 + L1MB8 LINE L1 5616 6110 -68 1145 101 5 70 chr12 56676935 56677068 -87605421 + AluSc SINE Alu 1 141 -168 2253 61 24 3 chr12 56677068 56677364 -87605125 + AluSp SINE Alu 2 303 -10 2362 68 7 0 chr12 56677367 56677676 -87604813 + AluY SINE Alu 1 311 0 1145 101 5 70 chr12 56677676 56677737 -87604752 + AluSc SINE Alu 143 186 -123 481 222 89 101 chr12 56677747 56678184 -87604305 + HAL1b LINE L1 1198 1340 -8 24 32 0 0 chr12 56678386 56678417 -87604072 + AT_rich Low_complexity Low_complexity 1 31 0 1819 157 13 0 chr12 56678417 56678723 -87603766 + AluSx SINE Alu 1 310 -2 1604 178 0 14 chr12 56678741 56679022 -87603467 + AluSx SINE Alu 14 290 -22 2254 94 0 0 chr12 56679024 56679331 -87603158 + AluY SINE Alu 1 307 -4 1221 146 32 18 chr12 56679468 56679688 -87602801 + AluSg SINE Alu 1 223 -87 777 176 0 16 chr12 56679997 56680122 -87602367 - FLAM_A SINE Alu -10 123 1 209 302 139 16 chr12 56680216 56680262 -87602227 + L2 LINE L2 3161 3200 -113 1862 158 0 3 chr12 56680262 56680565 -87601924 - AluSc SINE Alu -7 302 1 209 302 139 16 chr12 56680565 56680647 -87601842 + L2 LINE L2 3200 3305 -8 1924 146 3 0 chr12 56680897 56681192 -87601297 - AluSx SINE Alu -16 296 1 595 175 10 0 chr12 56681239 56681336 -87601153 + FLAM_A SINE Alu 18 115 -27 2339 82 0 0 chr12 56681337 56681643 -87600846 + AluY SINE Alu 1 306 -5 355 220 25 85 chr12 56681643 56681761 -87600728 - L1ME3 LINE L1 -43 6119 6009 2228 87 6 16 chr12 56681850 56682161 -87600328 - AluSq SINE Alu -5 308 1 2162 108 0 10 chr12 56682761 56683114 -87599375 + AluSx SINE Alu 1 350 0 1891 125 32 0 chr12 56683628 56683909 -87598580 + AluSx SINE Alu 1 290 -22 2264 96 0 6 chr12 56684096 56684408 -87598081 + AluSx SINE Alu 3 312 0 1634 156 10 31 chr12 56684605 56684921 -87597568 + AluJb SINE Alu 1 310 0 2186 104 10 0 chr12 56684927 56685234 -87597255 + AluSx SINE Alu 3 312 0 2183 113 0 0 chr12 56686970 56687279 -87595210 + AluSx SINE Alu 2 310 -2 715 191 0 29 chr12 56687279 56687406 -87595083 - FLAM_C SINE Alu -186 126 2 241 234 0 47 chr12 56689797 56689861 -87592628 - L2 LINE L2 -2 3311 3251 1713 188 0 7 chr12 56689941 56690239 -87592250 + AluJo SINE Alu 4 299 -13 224 279 149 54 chr12 56690538 56690760 -87591729 + L2 LINE L2 2147 2389 -925 217 224 17 17 chr12 56690851 56690909 -87591580 + L2 LINE L2 2589 2646 -668 1969 125 0 3 chr12 56690997 56691357 -87591132 - AluSx SINE Alu 0 312 11 1594 180 20 3 chr12 56691641 56691936 -87590553 - AluJb SINE Alu -8 304 5 706 169 0 46 chr12 56692040 56692170 -87590319 + AluJb SINE Alu 2 125 -187 2484 50 0 0 chr12 56692176 56692478 -87590011 + AluY SINE Alu 1 302 -9 2073 84 13 39 chr12 56692538 56692848 -87589641 + AluSq SINE Alu 1 302 -11 1349 193 3 45 chr12 56692965 56693136 -87589353 - AluJo SINE Alu -23 289 133 1847 114 7 50 chr12 56693136 56693435 -87589054 - AluSx SINE Alu -26 286 1 1349 193 3 45 chr12 56693435 56693553 -87588936 - AluJo SINE Alu -179 133 12 245 255 196 0 chr12 56693566 56693668 -87588821 - L1ME LINE L1 -488 5633 5512 1316 205 40 36 chr12 56693669 56693971 -87588518 + AluSx SINE Alu 1 303 -9 267 152 0 0 chr12 56693971 56694017 -87588472 + GA-rich Low_complexity Low_complexity 3 48 0 294 317 12 0 chr12 56694026 56694108 -87588381 - L1ME LINE L1 -2282 5526 5444 1162 41 28 0 chr12 56694152 56694297 -87588192 + L1PA4 LINE L1 6006 6154 -1 2136 111 10 0 chr12 56694350 56694657 -87587832 - AluSx SINE Alu -2 310 1 2230 88 0 0 chr12 56695117 56695411 -87587078 - AluY SINE Alu -16 295 2 690 162 8 0 chr12 56695453 56695570 -87586919 + AluJo SINE Alu 19 136 -176 180 143 0 0 chr12 56695593 56695620 -87586869 + (A)n Simple_repeat Simple_repeat 1 30 -5 1885 131 10 0 chr12 56695620 56695911 -87586578 - AluY SINE Alu -17 294 1 180 143 0 0 chr12 56695911 56695918 -87586571 + (A)n Simple_repeat Simple_repeat 29 35 0 1075 194 45 71 chr12 56695922 56696232 -87586257 - AluSx SINE Alu 0 302 1 284 144 56 56 chr12 56696233 56696323 -87586166 - Charlie4 DNA MER1_type -70 1891 1802 2221 114 0 0 chr12 56696423 56696729 -87585760 + AluSq SINE Alu 1 306 -7 2045 102 0 54 chr12 56696733 56697047 -87585442 + AluSp SINE Alu 5 301 -12 22 0 0 0 chr12 56697508 56697530 -87584959 + AT_rich Low_complexity Low_complexity 1 22 0 2118 109 0 7 chr12 56697598 56697901 -87584588 - AluSx SINE Alu -11 301 1 30 0 0 0 chr12 56699298 56699328 -87583161 + AT_rich Low_complexity Low_complexity 1 30 0 246 343 56 0 chr12 56699531 56699639 -87582850 + L3 LINE CR1 1083 1196 -381 1389 161 46 15 chr12 56699645 56699905 -87582584 + AluJo SINE Alu 1 268 -44 815 132 0 16 chr12 56700062 56700191 -87582298 + AluSg/x SINE Alu 168 294 -16 1387 107 25 0 chr12 56700191 56700387 -87582102 - AluSp SINE Alu -36 277 77 808 123 14 36 chr12 56700387 56700525 -87581964 - AluSq/x SINE Alu -177 135 1 2047 96 7 7 chr12 56700562 56700863 -87581626 + AluY SINE Alu 9 309 -2 2022 108 7 14 chr12 56700874 56701169 -87581320 + AluSx SINE Alu 7 299 -13 965 141 0 0 chr12 56701624 56701797 -87580692 + AluSg/x SINE Alu 133 305 0 215 200 0 0 chr12 56702648 56702688 -87579801 + C-rich Low_complexity Low_complexity 1 40 0 180 111 0 0 chr12 56702894 56702921 -87579568 + (CCGGG)n Simple_repeat Simple_repeat 5 31 0 1988 121 0 0 chr12 56702921 56703210 -87579279 + AluSx SINE Alu 9 297 -15 2207 63 0 11 chr12 56703933 56704238 -87578251 - AluY SINE Alu 0 302 1 252 79 0 0 chr12 56704370 56704408 -87578081 + Alu SINE Alu 258 295 -7 2004 117 7 0 chr12 56704410 56704715 -87577774 + AluSx SINE Alu 1 307 0 2276 38 55 3 chr12 56704888 56705178 -87577311 - AluY SINE Alu -6 305 1 222 62 0 0 chr12 56706040 56706072 -87576417 + (TA)n Simple_repeat Simple_repeat 1 32 0 333 0 0 0 chr12 56707316 56707353 -87575136 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr12 56707781 56707803 -87574686 + AT_rich Low_complexity Low_complexity 1 22 0 640 157 75 0 chr12 56711082 56711216 -87571273 - L1MD3 LINE L1 -13 7982 7839 2228 69 17 0 chr12 56711217 56711505 -87570984 + AluY SINE Alu 1 293 -18 477 164 168 1 chr12 56711505 56711646 -87570843 - L1MC4a LINE L1 -721 7064 6883 920 92 0 8 chr12 56711665 56711795 -87570694 + AluSq/x SINE Alu 5 133 -179 2344 72 0 3 chr12 56711917 56712222 -87570267 - AluY SINE Alu -7 304 1 1644 161 18 7 chr12 56712235 56712520 -87569969 - AluJo SINE Alu -23 289 2 1784 166 10 3 chr12 56712594 56712902 -87569587 + AluJo SINE Alu 1 310 -2 738 152 30 15 chr12 56712925 56713057 -87569432 + AluJo SINE Alu 6 139 -173 1517 158 28 14 chr12 56713060 56713344 -87569145 + AluJo SINE Alu 1 288 -24 1158 171 40 0 chr12 56713384 56713421 -87569068 + AluJo SINE Alu 85 119 -193 449 17 17 0 chr12 56713421 56713479 -87569010 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1158 171 40 0 chr12 56713479 56713640 -87568849 + AluJo SINE Alu 119 291 -21 2119 126 3 0 chr12 56713641 56713942 -87568547 + AluSx SINE Alu 1 302 -10 2424 72 0 0 chr12 56713942 56714247 -87568242 + AluY SINE Alu 1 305 -6 1392 153 0 5 chr12 56714250 56714473 -87568016 + AluJb SINE Alu 85 306 -6 2415 100 6 3 chr12 56714475 56714786 -87567703 + AluSx SINE Alu 1 312 0 213 71 95 0 chr12 56715054 56715096 -87567393 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2352 88 0 10 chr12 56715610 56715906 -87566583 + AluSg SINE Alu 1 293 -17 225 0 0 0 chr12 56715916 56715941 -87566548 + (TG)n Simple_repeat Simple_repeat 2 26 0 335 238 13 0 chr12 56715941 56716025 -87566464 + L1MC4 LINE L1 1995 6984 -1338 875 76 110 0 chr12 56716028 56716146 -87566343 + AluSg SINE Alu 1 131 -179 2409 72 7 10 chr12 56716151 56716457 -87566032 + AluSp SINE Alu 1 305 -8 310 150 0 2 chr12 56716457 56716512 -87565977 - AluJo/FLAM SINE Alu -183 119 72 767 188 0 0 chr12 56716565 56716693 -87565796 - FLAM_C SINE Alu -14 129 2 2563 77 0 3 chr12 56716859 56717171 -87565318 - AluY SINE Alu 0 311 1 2213 126 7 0 chr12 56717172 56717474 -87565015 - AluSq SINE Alu -9 304 1 2016 139 165 26 chr12 56718384 56718446 -87564043 - Charlie1 DNA MER1_type 0 2761 2709 1871 176 0 19 chr12 56718446 56718758 -87563731 + AluJo SINE Alu 1 306 -6 2016 139 165 26 chr12 56718758 56719198 -87563291 - Charlie1 DNA MER1_type -52 2709 2189 2181 120 0 0 chr12 56719256 56719547 -87562942 - AluSx SINE Alu -17 295 5 1543 155 23 36 chr12 56720353 56720656 -87561833 - AluJb SINE Alu -1 311 13 1509 153 37 47 chr12 56720757 56721057 -87561432 - AluJo SINE Alu -15 297 1 275 284 42 32 chr12 56721192 56721287 -87561202 + L2 LINE L2 3212 3307 -6 1609 179 11 4 chr12 56722346 56722620 -87559869 - AluJb SINE Alu -36 276 1 203 122 0 61 chr12 56723599 56723648 -87558841 + (TCCCC)n Simple_repeat Simple_repeat 2 47 0 180 306 20 0 chr12 56723849 56723898 -87558591 - L3 LINE CR1 -652 925 876 1694 147 75 9 chr12 56723981 56724300 -87558189 - MER2 DNA MER2_type 0 345 6 253 272 22 22 chr12 56724850 56724942 -87557547 + CT-rich Low_complexity Low_complexity 1 92 0 27 0 0 0 chr12 56725654 56725681 -87556808 + AT_rich Low_complexity Low_complexity 1 27 0 205 293 0 17 chr12 56725807 56725865 -87556624 + C-rich Low_complexity Low_complexity 1 57 0 238 50 50 0 chr12 56728294 56728334 -87554155 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 2008 102 63 11 chr12 56729528 56729813 -87552676 - AluSp SINE Alu -13 300 1 189 107 0 0 chr12 56729865 56729893 -87552596 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 2089 117 23 3 chr12 56730218 56730517 -87551972 + AluSg SINE Alu 1 305 -5 1212 182 134 24 chr12 56730529 56730782 -87551707 - AluJb SINE Alu -20 292 12 446 190 0 107 chr12 56731269 56731390 -87551099 + BC200 scRNA scRNA 5 112 -88 1815 111 52 8 chr12 56731415 56731667 -87550822 + AluSc SINE Alu 1 263 -46 527 124 155 0 chr12 56733097 56733194 -87549295 - AluSq/x SINE Alu -179 133 22 2406 91 0 3 chr12 56733196 56733503 -87548986 - AluSc SINE Alu -3 306 1 23 33 0 0 chr12 56735670 56735700 -87546789 + AT_rich Low_complexity Low_complexity 1 30 0 334 241 100 100 chr12 56736382 56736552 -87545937 - MIR3 SINE MIR -21 187 18 2587 65 0 3 chr12 56737505 56737815 -87544674 + AluY SINE Alu 2 310 -1 2047 129 37 0 chr12 56738348 56738642 -87543847 + AluSq SINE Alu 1 305 -8 1820 161 0 7 chr12 56738642 56738940 -87543549 + AluSx SINE Alu 1 296 -16 260 70 23 0 chr12 56741230 56741273 -87541216 + (TA)n Simple_repeat Simple_repeat 2 45 0 2229 115 7 0 chr12 56741481 56741769 -87540720 - AluSg SINE Alu -20 290 1 307 277 69 38 chr12 56744914 56745073 -87537416 - MIR SINE MIR -58 204 41 2370 83 0 10 chr12 56745676 56745977 -87536512 - AluSc SINE Alu -11 298 1 2327 111 3 0 chr12 56748502 56748808 -87533681 + AluSp SINE Alu 1 307 -6 1485 163 53 53 chr12 56748837 56748920 -87533569 + AluJb SINE Alu 6 88 -224 2339 102 3 3 chr12 56748920 56749224 -87533265 + AluSx SINE Alu 1 304 -8 1485 163 53 53 chr12 56749224 56749276 -87533213 + AluJb SINE Alu 88 139 -173 185 0 40 0 chr12 56749276 56749301 -87533188 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1485 163 53 53 chr12 56749301 56749465 -87533024 + AluJb SINE Alu 138 306 -6 214 230 211 51 chr12 56749466 56749568 -87532921 + MIR SINE MIR 48 171 -37 186 296 159 38 chr12 56750004 56750136 -87532353 + L2 LINE L2 2560 2707 -607 2191 114 0 3 chr12 56750143 56750441 -87532048 + AluSx SINE Alu 1 297 -15 1764 169 3 23 chr12 56750448 56750586 -87531903 + AluJb SINE Alu 1 140 -172 2376 67 7 10 chr12 56750586 56750884 -87531605 + AluY SINE Alu 1 297 -14 1764 169 3 23 chr12 56750884 56751047 -87531442 + AluJb SINE Alu 140 296 -16 2208 119 6 3 chr12 56751129 56751440 -87531049 + AluSx SINE Alu 1 312 0 283 291 35 0 chr12 56751819 56751905 -87530584 - MIR SINE MIR -65 197 109 22 0 0 0 chr12 56752381 56752403 -87530086 + GC_rich Low_complexity Low_complexity 1 22 0 1110 128 0 24 chr12 56754222 56754386 -87528103 - AluJb SINE Alu -22 290 131 2484 74 0 3 chr12 56754393 56754704 -87527785 + AluY SINE Alu 1 310 -1 520 78 0 19 chr12 56754704 56754905 -87527584 + AluY SINE Alu 1 307 -3 729 192 0 0 chr12 56754905 56755025 -87527464 - AluJo/FLAM SINE Alu -191 121 2 273 260 68 14 chr12 56755945 56756091 -87526398 + L1ME4a LINE L1 5968 6121 0 275 305 97 30 chr12 56756179 56756331 -87526158 + MIR SINE MIR 3 165 -62 575 279 77 36 chr12 56756345 56756592 -87525897 + MIR SINE MIR 2 258 -4 2273 98 6 35 chr12 56758827 56759142 -87523347 - AluSp SINE Alu -3 310 5 2377 114 0 0 chr12 56759146 56759452 -87523037 - AluSq SINE Alu -7 306 1 272 144 56 56 chr12 56759552 56759642 -87522847 + Charlie4 DNA MER1_type 1802 1891 -70 594 189 9 0 chr12 56759644 56759750 -87522739 + FLAM_C SINE Alu 2 108 -35 826 160 28 7 chr12 56759971 56760115 -87522374 + AluSg/x SINE Alu 135 281 -29 372 271 0 0 chr12 56760134 56760230 -87522259 - L1ME LINE L1 -445 5717 5622 456 182 10 10 chr12 56761565 56761664 -87520825 + AluSp/q SINE Alu 204 302 -11 798 176 0 16 chr12 56761979 56762104 -87520385 - FLAM_A SINE Alu -10 123 1 1931 175 0 3 chr12 56762241 56762550 -87519939 - AluJb SINE Alu -4 308 1 1622 142 60 41 chr12 56762784 56763101 -87519388 + MER33 DNA MER1_type 1 323 -1 1216 189 33 0 chr12 56763207 56763419 -87519070 + MER20 DNA MER1_type 1 219 0 908 117 0 29 chr12 56764047 56764184 -87518305 + FLAM_C SINE Alu 1 133 0 872 127 8 22 chr12 56764278 56764412 -87518077 - FLAM_C SINE Alu -1 132 1 358 201 90 69 chr12 56764419 56764444 -87518045 - L1ME3 LINE L1 -7 6155 6132 2318 114 0 0 chr12 56764444 56764751 -87517738 + AluSx SINE Alu 1 307 -5 358 201 90 69 chr12 56764751 56764869 -87517620 - L1ME3 LINE L1 -30 6132 6009 2382 92 6 16 chr12 56764953 56765269 -87517220 - AluSq SINE Alu 0 313 1 1591 184 14 0 chr12 56765982 56766265 -87516224 - AluJo SINE Alu 0 312 26 384 154 0 0 chr12 56766332 56766397 -87516092 + Alu SINE Alu 238 302 0 442 245 40 40 chr12 56767185 56767336 -87515153 + L2 LINE L2 3160 3310 -3 2286 72 28 10 chr12 56767401 56767692 -87514797 + AluSq SINE Alu 1 296 -17 21 0 0 0 chr12 56768297 56768318 -87514171 + AT_rich Low_complexity Low_complexity 1 21 0 1636 160 24 21 chr12 56768377 56768665 -87513824 + AluJb SINE Alu 1 289 -23 1959 154 3 3 chr12 56769137 56769423 -87513066 + AluSx SINE Alu 1 286 -26 1517 124 22 4 chr12 56769819 56770045 -87512444 - MER30 DNA MER1_type 0 230 1 1942 167 0 0 chr12 56770555 56770837 -87511652 - AluSx SINE Alu -30 282 1 2589 105 17 8 chr12 56770887 56771248 -87511241 - THE1B LTR MaLR 0 364 1 315 296 148 7 chr12 56771631 56771766 -87510723 + MLT1L LTR MaLR 373 526 -89 2309 110 0 0 chr12 56771786 56772096 -87510393 - AluSg SINE Alu 0 310 1 231 114 0 0 chr12 56773445 56773480 -87509009 + (TC)n Simple_repeat Simple_repeat 1 35 0 1529 157 22 66 chr12 56773924 56774242 -87508247 + AluJo SINE Alu 1 304 -8 401 362 112 25 chr12 56774348 56774713 -87507776 + L2 LINE L2 2851 3247 -25 2245 98 0 20 chr12 56774715 56775021 -87507468 - AluSg SINE Alu -10 300 1 2033 151 164 3 chr12 56775558 56775774 -87506715 - MLT1C LTR MaLR -13 454 274 399 41 0 0 chr12 56775774 56775823 -87506666 + (TG)n Simple_repeat Simple_repeat 2 50 0 2033 151 164 3 chr12 56775823 56775997 -87506492 - MLT1C LTR MaLR -193 274 1 1298 208 203 42 chr12 56775997 56776415 -87506074 + MLT1D LTR MaLR 20 505 0 838 158 0 15 chr12 56776563 56776696 -87505793 + FLAM_A SINE Alu 1 131 -2 379 218 16 48 chr12 56776740 56776827 -87505662 - MER112 DNA MER1_type -106 154 71 2211 113 0 0 chr12 56776827 56777127 -87505362 + AluSx SINE Alu 1 300 -12 379 218 16 48 chr12 56777127 56777163 -87505326 - MER112 DNA MER1_type -189 71 35 2401 152 48 37 chr12 56777186 56777621 -87504868 + L1MCa LINE L1 19 458 -5968 582 169 0 0 chr12 56777623 56777706 -87504783 + Tigger7 DNA MER2_type 1 83 -256 856 157 0 21 chr12 56777707 56777830 -87504659 + FLAM_C SINE Alu 1 122 -190 2372 98 3 0 chr12 56777830 56778127 -87504362 - AluSx SINE Alu -14 298 1 856 157 0 21 chr12 56778127 56778143 -87504346 + FLAM_C SINE Alu 122 137 -175 1665 90 43 12 chr12 56778143 56778315 -87504174 + Tigger7 DNA MER2_type 2225 2409 -78 1295 189 54 30 chr12 56778315 56778649 -87503840 + MER2 DNA MER2_type 3 344 0 1665 90 43 12 chr12 56778649 56778731 -87503758 + Tigger7 DNA MER2_type 2409 2487 0 3014 151 58 25 chr12 56778731 56779295 -87503194 + L1MCa LINE L1 459 1041 -5385 788 163 85 0 chr12 56779308 56779449 -87503040 + MER21B LTR ERV1 343 495 -368 182 74 0 0 chr12 56779678 56779705 -87502784 + L2 LINE L2 2669 2695 -619 2173 103 10 13 chr12 56780033 56780169 -87502320 + AluSx SINE Alu 1 136 -176 2527 73 3 0 chr12 56780169 56780471 -87502018 + AluSp SINE Alu 1 303 -10 2173 103 10 13 chr12 56780471 56780634 -87501855 + AluSx SINE Alu 136 299 -13 1145 162 23 128 chr12 56781394 56781745 -87500744 + MLT1A1 LTR MaLR 1 314 -51 234 0 0 0 chr12 56781745 56781771 -87500718 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2403 121 95 111 chr12 56781771 56781816 -87500673 + L1MCa LINE L1 1038 1082 -5344 2023 143 0 3 chr12 56781816 56782116 -87500373 + AluSx SINE Alu 1 299 -13 2403 121 95 111 chr12 56782116 56782183 -87500306 + L1MCa LINE L1 1082 1149 -5277 697 184 0 59 chr12 56782183 56782319 -87500170 + FLAM_A SINE Alu 1 128 -5 2403 121 95 111 chr12 56782319 56782478 -87500011 + L1MCa LINE L1 1149 1309 -5117 2519 64 0 6 chr12 56782478 56782791 -87499698 + AluY SINE Alu 1 311 0 2403 121 95 111 chr12 56782791 56782907 -87499582 + L1MCa LINE L1 1309 1425 -5001 189 0 0 0 chr12 56782907 56782928 -87499561 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2403 121 95 111 chr12 56782928 56783158 -87499331 + L1MCa LINE L1 1425 1740 -4686 1592 171 69 4 chr12 56783158 56783433 -87499056 + AluJo SINE Alu 12 304 -8 2403 121 95 111 chr12 56783433 56783545 -87498944 + L1MCa LINE L1 1740 1852 -4574 1693 188 3 10 chr12 56783545 56783849 -87498640 + AluJo SINE Alu 1 302 -10 1773 137 32 18 chr12 56784012 56784297 -87498192 + AluSx SINE Alu 2 290 -22 2162 95 0 60 chr12 56784298 56784615 -87497874 + AluSg SINE Alu 1 298 -12 2101 131 17 0 chr12 56784985 56785276 -87497213 - AluSx SINE Alu -15 297 2 6467 23 3 7 chr12 56785384 56786137 -87496352 - L1PA4 LINE L1 0 6155 5406 1141 252 94 28 chr12 56786138 56786701 -87495788 + L1ME4a LINE L1 5518 6117 -4 2403 98 0 7 chr12 56786763 56787070 -87495419 + AluSc SINE Alu 1 305 -4 1448 177 12 87 chr12 56787848 56787966 -87494523 + AluJo SINE Alu 1 126 -186 2340 109 3 0 chr12 56787966 56788278 -87494211 - AluSp SINE Alu 0 313 1 1448 177 12 87 chr12 56788278 56788481 -87494008 + AluJo SINE Alu 126 298 -14 2419 82 0 0 chr12 56788645 56788938 -87493551 - AluSx SINE Alu -17 295 3 2153 136 0 0 chr12 56789106 56789407 -87493082 + AluSx SINE Alu 1 301 -11 1939 138 10 10 chr12 56789656 56789953 -87492536 - AluJo SINE Alu -15 297 1 1817 125 61 0 chr12 56790014 56790301 -87492188 + AluSc SINE Alu 1 303 0 604 195 38 88 chr12 56790330 56790415 -87492074 + MER58 DNA MER1_type 4 79 -262 1989 158 0 10 chr12 56790415 56790719 -87491770 - AluSx SINE Alu -11 301 1 604 195 38 88 chr12 56790719 56790792 -87491697 + MER58 DNA MER1_type 79 154 -187 2145 127 0 0 chr12 56790801 56791100 -87491389 - AluSx SINE Alu -12 300 2 2054 105 45 3 chr12 56791107 56791393 -87491096 - AluSc SINE Alu -7 302 5 252 226 161 16 chr12 56791430 56791492 -87490997 + Charlie1 DNA MER1_type 4 74 -2687 1317 199 10 14 chr12 56791552 56791843 -87490646 + AluSx SINE Alu 6 295 -17 2144 138 163 37 chr12 56791901 56792347 -87490142 + Charlie1 DNA MER1_type 2189 2708 -53 1833 173 0 20 chr12 56792347 56792653 -87489836 - AluJo SINE Alu -12 300 1 2144 138 163 37 chr12 56792653 56792715 -87489774 + Charlie1 DNA MER1_type 2708 2761 0 2182 126 7 0 chr12 56793625 56793927 -87488562 + AluSq SINE Alu 1 304 -9 2543 77 0 3 chr12 56793928 56794240 -87488249 + AluY SINE Alu 1 311 0 1563 156 13 57 chr12 56794418 56794719 -87487770 + AluJo SINE Alu 1 288 -24 1001 175 0 0 chr12 56795060 56795220 -87487269 - AluJb SINE Alu -23 289 130 2027 144 0 0 chr12 56795224 56795515 -87486974 - AluSx SINE Alu -21 291 1 1021 99 0 0 chr12 56795795 56795926 -87486563 - AluSg/x SINE Alu -24 288 158 1563 171 49 11 chr12 56796261 56796547 -87485942 - AluJo SINE Alu -14 298 2 2301 154 58 7 chr12 56798457 56798873 -87483616 - L1MC2 LINE L1 -1 6343 5907 840 122 0 15 chr12 56799616 56799747 -87482742 + FLAM_C SINE Alu 15 143 0 419 297 162 0 chr12 56800304 56800526 -87481963 - MIR SINE MIR -3 259 2 2222 109 0 10 chr12 56801521 56801824 -87480665 + AluSx SINE Alu 1 300 -12 330 26 0 0 chr12 56801824 56801863 -87480626 + (TA)n Simple_repeat Simple_repeat 1 39 0 1532 125 61 84 chr12 56801990 56802287 -87480202 - AluSx SINE Alu -11 301 12 2214 134 0 0 chr12 56802288 56802595 -87479894 - AluSx SINE Alu -4 308 2 276 154 0 0 chr12 56802845 56802897 -87479592 + (TG)n Simple_repeat Simple_repeat 1 52 0 3142 142 56 46 chr12 56804149 56804405 -87478084 - L1MC1 LINE L1 0 6333 6081 1931 152 0 11 chr12 56804405 56804688 -87477801 + AluJb SINE Alu 1 280 -32 3142 142 56 46 chr12 56804688 56805123 -87477366 - L1MC1 LINE L1 -252 6081 5635 505 258 0 0 chr12 56805226 56805346 -87477143 + C-rich Low_complexity Low_complexity 1 120 0 212 338 0 15 chr12 56805386 56805454 -87477035 + CT-rich Low_complexity Low_complexity 3 69 0 246 303 11 28 chr12 56805476 56805654 -87476835 + A-rich Low_complexity Low_complexity 5 179 0 33 43 0 0 chr12 56806168 56806215 -87476274 + GC_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr12 56806294 56806315 -87476174 + AT_rich Low_complexity Low_complexity 1 21 0 542 170 21 0 chr12 56808646 56808740 -87473749 + AluJ/FLAM SINE Alu 2 97 -215 263 294 5 108 chr12 56808964 56809036 -87473453 - MER5A DNA MER1_type -15 174 96 1507 183 31 7 chr12 56809036 56809326 -87473163 - AluJo SINE Alu -15 297 1 263 294 5 108 chr12 56809326 56809447 -87473042 - MER5A DNA MER1_type -93 96 1 2299 88 17 0 chr12 56809557 56809851 -87472638 - AluSp SINE Alu -14 299 1 2146 101 0 11 chr12 56810042 56810359 -87472130 - AluSx SINE Alu 0 314 1 419 297 162 0 chr12 56811354 56811576 -87470913 + MIR SINE MIR 2 259 -3 840 122 0 15 chr12 56812133 56812264 -87470225 - FLAM_C SINE Alu 0 143 15 2301 154 58 7 chr12 56813007 56813423 -87469066 + L1MC2 LINE L1 5907 6343 -1 1563 171 49 11 chr12 56815333 56815619 -87466870 + AluJo SINE Alu 2 298 -14 2273 114 3 3 chr12 56816814 56817120 -87465369 + AluSx SINE Alu 1 306 -6 25 31 0 0 chr12 56817348 56817380 -87465109 + AT_rich Low_complexity Low_complexity 1 32 0 2183 115 3 7 chr12 56818223 56818527 -87463962 + AluSq SINE Alu 1 303 -10 2427 84 0 0 chr12 56819734 56820033 -87462456 + AluY SINE Alu 1 299 -12 1975 128 0 28 chr12 56821244 56821534 -87460955 - AluJo SINE Alu -18 294 13 212 158 18 0 chr12 56821634 56821691 -87460798 + (TA)n Simple_repeat Simple_repeat 2 59 0 2243 94 30 0 chr12 56822539 56822837 -87459652 - AluSq SINE Alu -5 308 2 25 0 0 0 chr12 56823782 56823807 -87458682 + AT_rich Low_complexity Low_complexity 1 25 0 210 37 0 0 chr12 56827006 56827033 -87455456 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2466 92 0 0 chr12 56827312 56827616 -87454873 + AluSq SINE Alu 1 304 -9 432 267 24 48 chr12 56827692 56827898 -87454591 - L2 LINE L2 0 3313 3113 25 0 0 0 chr12 56828070 56828095 -87454394 + AT_rich Low_complexity Low_complexity 1 25 0 2331 91 3 14 chr12 56828457 56828754 -87453735 - AluSp SINE Alu -19 294 1 6467 23 3 7 chr12 56828765 56829518 -87452971 - L1PA4 LINE L1 0 6155 5406 1141 252 94 28 chr12 56829519 56830082 -87452407 + L1ME4a LINE L1 5518 6117 -4 2088 128 0 4 chr12 56830144 56830425 -87452064 + AluSc SINE Alu 1 280 -29 1048 128 0 0 chr12 56830425 56830574 -87451915 + AluSg/x SINE Alu 152 300 -10 1164 237 16 8 chr12 56830574 56830937 -87451552 + L1 LINE L1 2696 3061 -3085 754 190 7 0 chr12 56830958 56831095 -87451394 + FLAM_C SINE Alu 6 143 0 1331 181 15 55 chr12 56831099 56831370 -87451119 + AluJo SINE Alu 1 260 -52 538 199 7 7 chr12 56831373 56831509 -87450980 + L1 LINE L1 3139 3274 -2872 1492 139 18 106 chr12 56831509 56831598 -87450891 + AluJo SINE Alu 1 96 -216 1852 150 17 10 chr12 56831598 56831892 -87450597 - AluJo SINE Alu -16 296 1 1492 139 18 106 chr12 56831892 56832132 -87450357 + AluJo SINE Alu 96 301 -11 1669 85 60 4 chr12 56832786 56833021 -87449468 - AluSq SINE Alu -9 304 57 918 108 0 0 chr12 56833021 56833141 -87449348 - AluSp SINE Alu -193 120 1 434 278 86 56 chr12 56833493 56833727 -87448762 - MIR SINE MIR -12 250 10 190 207 0 52 chr12 56833746 56833804 -87448685 - L2 LINE L2 -208 3064 3010 1664 183 91 59 chr12 56833878 56833968 -87448521 + MER47B DNA MER2_type 1 87 -2236 2292 105 3 16 chr12 56833968 56834282 -87448207 + AluSx SINE Alu 1 310 -2 1664 183 91 59 chr12 56834282 56834596 -87447893 + MER47B DNA MER2_type 87 418 0 804 213 17 11 chr12 56835817 56835852 -87446637 - MER3 DNA MER1_type 0 209 176 1882 139 11 0 chr12 56835852 56836154 -87446335 - AluSx SINE Alu 0 305 1 804 213 17 11 chr12 56836154 56836291 -87446198 - MER3 DNA MER1_type -33 176 35 1963 127 19 26 chr12 56836291 56836598 -87445891 + AluSx SINE Alu 1 305 -7 2098 117 17 0 chr12 56836602 56836892 -87445597 + AluSx SINE Alu 1 295 -17 402 115 0 0 chr12 56836894 56836955 -87445534 + (TA)n Simple_repeat Simple_repeat 2 62 0 555 230 78 7 chr12 56837087 56837357 -87445132 + AluSg SINE Alu 1 289 -11 498 266 42 0 chr12 56838667 56838810 -87443679 - MIR SINE MIR -33 229 81 360 209 0 0 chr12 56838814 56838881 -87443608 - MLT1B LTR MaLR 0 390 324 2226 114 3 10 chr12 56838881 56839189 -87443300 + AluSq SINE Alu 2 307 -6 762 250 6 0 chr12 56839191 56839347 -87443142 + AluJo SINE Alu 126 282 -30 180 97 0 0 chr12 56839349 56839380 -87443109 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 2474 123 32 74 chr12 56839380 56839607 -87442882 - MLT1C LTR MaLR -53 414 212 2364 92 0 13 chr12 56839607 56839912 -87442577 - AluSx SINE Alu -11 301 1 2474 123 32 74 chr12 56839912 56840116 -87442373 - MLT1C LTR MaLR -255 212 1 235 331 47 41 chr12 56840222 56840391 -87442098 + L2 LINE L2 2635 2804 -510 2250 128 0 10 chr12 56840391 56840703 -87441786 - AluSx SINE Alu -3 309 1 2220 117 0 0 chr12 56841059 56841358 -87441131 + AluSx SINE Alu 1 299 -13 433 264 106 18 chr12 56841656 56841883 -87440606 + L1MC4 LINE L1 6459 6705 -1337 233 95 63 0 chr12 56841893 56841956 -87440533 + (TA)n Simple_repeat Simple_repeat 1 67 0 313 243 79 43 chr12 56841957 56842097 -87440392 + L1MC4 LINE L1 6615 6759 -1283 4394 213 94 16 chr12 56842098 56842602 -87439887 + L1MC4 LINE L1 6675 7138 -904 2279 87 0 3 chr12 56842602 56842914 -87439575 + AluSp SINE Alu 1 311 0 4394 213 94 16 chr12 56842914 56843547 -87438942 + L1MC4 LINE L1 7138 7902 -140 264 167 0 0 chr12 56843551 56843605 -87438884 + L1MC4 LINE L1 7988 8041 -1 1927 169 0 0 chr12 56843775 56844077 -87438412 + AluJb SINE Alu 1 302 -10 350 270 22 0 chr12 56844081 56844170 -87438319 + L1M4 LINE L1 4083 4173 -1973 1936 173 0 10 chr12 56844171 56844471 -87438018 + AluJo SINE Alu 1 297 -15 2193 113 7 3 chr12 56844472 56844781 -87437708 + AluSg SINE Alu 1 310 0 2399 82 0 0 chr12 56845241 56845533 -87436956 - AluSq SINE Alu -21 292 1 396 184 319 7 chr12 56845539 56845680 -87436809 - MIR SINE MIR -55 207 23 241 323 20 10 chr12 56845693 56845792 -87436697 + MIR SINE MIR 32 131 -77 285 167 0 0 chr12 56845908 56845962 -87436527 + T-rich Low_complexity Low_complexity 1 54 0 2184 127 0 0 chr12 56846056 56846347 -87436142 - AluSx SINE Alu -21 291 1 1699 159 7 22 chr12 56846491 56846654 -87435835 - AluJo SINE Alu 0 309 151 1744 120 205 35 chr12 56846654 56846820 -87435669 + MSTA LTR MaLR 1 138 -290 2508 64 0 3 chr12 56846820 56847116 -87435373 + AluY SINE Alu 1 295 -16 1744 120 205 35 chr12 56847116 56847315 -87435174 + MSTA LTR MaLR 138 428 0 1699 159 7 22 chr12 56847315 56847455 -87435034 - AluJo SINE Alu -158 151 10 1349 169 165 4 chr12 56847639 56847894 -87434595 - AluJo SINE Alu -6 296 1 26 0 0 0 chr12 56847894 56847920 -87434569 + AT_rich Low_complexity Low_complexity 1 26 0 1596 194 15 7 chr12 56847994 56848267 -87434222 - AluJb SINE Alu -37 275 1 2254 104 0 3 chr12 56848457 56848755 -87433734 - AluSc SINE Alu -12 297 1 1445 170 58 33 chr12 56848756 56848938 -87433551 - AluJb SINE Alu -12 300 107 2243 107 7 0 chr12 56848938 56849229 -87433260 + AluSg SINE Alu 1 293 -17 1445 170 58 33 chr12 56849229 56849322 -87433167 - AluJb SINE Alu -205 107 18 692 167 7 28 chr12 56849334 56849478 -87433011 - L1M4 LINE L1 -843 5303 5163 1874 134 57 3 chr12 56849478 56849761 -87432728 - AluJo SINE Alu -14 298 1 2264 92 3 20 chr12 56849768 56850073 -87432416 - AluSp SINE Alu -13 300 1 795 156 0 22 chr12 56850097 56850232 -87432257 - FLAM_C SINE Alu 0 143 12 352 54 36 0 chr12 56850243 56850299 -87432190 - L1M4 LINE L1 -5246 1296 1239 2315 136 27 33 chr12 56850300 56850344 -87432145 + MSTC LTR MaLR 1 44 -384 2147 123 3 0 chr12 56850344 56850636 -87431853 - AluSx SINE Alu -19 293 1 2315 136 27 33 chr12 56850636 56850959 -87431530 + MSTC LTR MaLR 44 366 -62 302 74 86 123 chr12 56850993 56851026 -87431463 + MSTC LTR MaLR 351 384 -44 2156 89 3 3 chr12 56851026 56851332 -87431157 + AluSx SINE Alu 1 306 0 302 74 86 123 chr12 56851332 56851376 -87431113 + MSTC LTR MaLR 384 428 0 638 167 218 0 chr12 56851377 56851419 -87431070 - L1M4 LINE L1 -5301 1241 1209 1624 182 10 10 chr12 56851419 56851721 -87430768 + AluJo SINE Alu 4 305 -7 638 167 218 0 chr12 56851721 56851852 -87430637 - L1M4 LINE L1 -5333 1209 1030 2016 151 0 0 chr12 56851854 56852153 -87430336 + AluSx SINE Alu 1 299 -13 2826 158 62 4 chr12 56852156 56852656 -87429833 + ERVL LTR ERVL 918 1446 -4318 527 239 59 94 chr12 56852656 56852711 -87429778 - LTR26 LTR ERV1 -1 602 547 1861 164 3 3 chr12 56852711 56853016 -87429473 + AluJo SINE Alu 1 305 -7 527 239 59 94 chr12 56853016 56853215 -87429274 - LTR26 LTR ERV1 -56 547 357 1007 171 37 0 chr12 56853223 56853387 -87429102 + ERVL LTR ERVL 2602 2771 -2993 616 167 0 0 chr12 56853391 56853487 -87429002 - FRAM SINE Alu -17 159 64 5388 188 62 2 chr12 56853488 56853712 -87428777 + ERVL LTR ERVL 2998 3207 -2447 2286 112 0 3 chr12 56853712 56854015 -87428474 - AluSq SINE Alu -11 302 1 5388 188 62 2 chr12 56854015 56854773 -87427716 + ERVL LTR ERVL 3207 4039 -1615 1297 91 83 0 chr12 56854773 56855065 -87427424 + L1P5 LINE L1 5179 5491 -665 903 115 61 14 chr12 56855065 56855213 -87427276 + AluSg/x SINE Alu 156 310 0 536 161 42 11 chr12 56855213 56855303 -87427186 + L1M3 LINE L1 5479 5573 -592 7402 48 7 0 chr12 56855303 56856690 -87425799 + L1PA6 LINE L1 4762 6154 0 536 161 42 11 chr12 56856690 56856705 -87425784 + L1M3 LINE L1 5573 5586 -579 8327 141 14 39 chr12 56856705 56857488 -87425001 + ERVL LTR ERVL 4082 4818 -946 2192 126 7 0 chr12 56857488 56857782 -87424707 - AluSx SINE Alu -16 296 1 8327 141 14 39 chr12 56857782 56858384 -87424105 + ERVL LTR ERVL 4818 5433 -331 201 39 0 0 chr12 56858384 56858410 -87424079 + (CA)n Simple_repeat Simple_repeat 2 27 0 411 147 15 0 chr12 56858438 56858506 -87423983 - MLT2A2 LTR ERVL 0 453 385 1813 101 0 4 chr12 56858506 56858744 -87423745 + AluSq SINE Alu 1 237 -76 751 87 0 0 chr12 56858745 56858849 -87423640 + AluSg/x SINE Alu 208 311 -1 2417 162 22 90 chr12 56858850 56859150 -87423339 - MLT2B3 LTR ERVL -54 500 250 2173 128 0 7 chr12 56859150 56859454 -87423035 + AluSx SINE Alu 1 302 -10 2417 162 22 90 chr12 56859454 56859689 -87422800 - MLT2B3 LTR ERVL -304 250 1 272 80 180 0 chr12 56859689 56859739 -87422750 + ERVL LTR ERVL 5439 5497 -267 293 170 57 0 chr12 56859739 56859792 -87422697 + AluJ/FLAM SINE Alu 6 61 -241 1262 123 0 0 chr12 56859957 56860120 -87422369 + AluSx SINE Alu 1 163 -149 353 100 33 0 chr12 56860120 56860180 -87422309 + AluSc SINE Alu 232 293 -6 567 150 16 90 chr12 56860189 56860383 -87422106 - L1MC/D LINE L1 -807 5435 5256 215 277 92 0 chr12 56860491 56860556 -87421933 - L2 LINE L2 -1 3312 3242 * 502 286 28 22 chr12 56860555 56860733 -87421756 + L2 LINE L2 2531 2709 -605 701 175 0 8 chr12 56860733 56860853 -87421636 + FRAM SINE Alu 58 176 0 1184 230 106 17 chr12 56860923 56861175 -87421314 + L2 LINE L2 2873 3176 -137 1920 114 21 18 chr12 56861175 56861494 -87420995 - AluSq SINE Alu 0 313 11 1184 230 106 17 chr12 56861494 56861645 -87420844 + L2 LINE L2 3176 3312 -1 733 342 80 13 chr12 56861819 56862433 -87420056 - L2 LINE L2 -213 3059 2412 2393 94 0 0 chr12 56862865 56863163 -87419326 + AluSx SINE Alu 1 298 -14 870 254 125 31 chr12 56863429 56863914 -87418575 - MER115 DNA AcHobo -3 690 118 415 333 87 16 chr12 56863995 56864178 -87418311 + MIR SINE MIR 19 214 -48 29 0 0 0 chr12 56864636 56864665 -87417824 + AT_rich Low_complexity Low_complexity 1 29 0 2202 125 0 0 chr12 56864667 56864962 -87417527 - AluSx SINE Alu -17 295 1 1590 185 50 4 chr12 56864966 56865247 -87417242 - AluJb SINE Alu -18 294 1 2208 106 3 0 chr12 56865401 56865713 -87416776 - AluSx SINE Alu 0 313 1 240 265 29 15 chr12 56865878 56865946 -87416543 + L2 LINE L2 3127 3195 -77 807 142 0 52 chr12 56866008 56866142 -87416347 + FLAM_C SINE Alu 1 127 -16 886 136 0 0 chr12 56866179 56866297 -87416192 + AluJb SINE Alu 1 118 -194 32 43 0 0 chr12 56866297 56866343 -87416146 + AT_rich Low_complexity Low_complexity 1 46 0 270 0 0 0 chr12 56866799 56866829 -87415660 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 428 333 0 0 chr12 56866830 56866962 -87415527 + C-rich Low_complexity Low_complexity 1 132 0 218 231 39 0 chr12 56866962 56867014 -87415475 + CT-rich Low_complexity Low_complexity 1 54 0 40 0 0 0 chr12 56867854 56867894 -87414595 + AT_rich Low_complexity Low_complexity 1 40 0 479 205 0 0 chr12 56868119 56868197 -87414292 - AluJ/FLAM SINE Alu -217 95 18 3294 188 39 35 chr12 56868209 56868353 -87414136 - L1M4 LINE L1 -843 5303 5161 2290 60 57 3 chr12 56868353 56868635 -87413854 - AluY SINE Alu -14 297 1 3294 188 39 35 chr12 56868635 56869334 -87413155 - L1M4 LINE L1 -985 5161 4457 1011 196 48 61 chr12 56869341 56869652 -87412837 - AluJo SINE Alu 0 312 6 233 196 0 0 chr12 56869658 56869714 -87412775 - L1M4 LINE L1 -1676 4470 4415 1093 160 34 0 chr12 56869714 56869889 -87412600 - AluJo SINE Alu -12 300 120 937 225 11 5 chr12 56869897 56870088 -87412401 - AluJo SINE Alu -119 193 2 1894 189 40 19 chr12 56870089 56870515 -87411974 - L1M4 LINE L1 -2094 4052 3614 1968 161 0 16 chr12 56870515 56870831 -87411658 - AluJb SINE Alu -1 311 1 1894 189 40 19 chr12 56870831 56870875 -87411614 - L1M4 LINE L1 -2532 3614 3572 1622 176 36 33 chr12 56870876 56871178 -87411311 + AluJo SINE Alu 1 303 -9 834 139 0 0 chr12 56871178 56871315 -87411174 + (GGGA)n Simple_repeat Simple_repeat 3 139 0 338 159 14 0 chr12 56871340 56871409 -87411080 + GA-rich Low_complexity Low_complexity 3 72 0 677 264 26 46 chr12 56871428 56871773 -87410716 - L1M4 LINE L1 -2560 3586 3249 1151 157 25 43 chr12 56872222 56872457 -87410032 - AluJo SINE Alu -11 301 71 410 253 11 0 chr12 56872463 56872550 -87409939 + AluJ/FLAM SINE Alu 3 90 -222 396 43 11 65 chr12 56872689 56872782 -87409707 + (TATAA)n Simple_repeat Simple_repeat 2 89 0 320 222 14 0 chr12 56872783 56872855 -87409634 - AluJo SINE Alu -224 78 6 2281 164 22 90 chr12 56872905 56873140 -87409349 + MLT2B3 LTR ERVL 1 250 -304 2200 128 0 7 chr12 56873140 56873444 -87409045 - AluSx SINE Alu -10 302 1 2281 164 22 90 chr12 56873444 56873744 -87408745 + MLT2B3 LTR ERVL 250 500 -54 758 87 0 0 chr12 56873745 56873849 -87408640 - AluSg/x SINE Alu -1 308 205 1822 101 0 4 chr12 56873850 56874088 -87408401 - AluSq SINE Alu -76 237 1 387 147 15 0 chr12 56874088 56874156 -87408333 + MLT2A2 LTR ERVL 385 453 0 201 39 0 0 chr12 56874184 56874210 -87408279 + (TG)n Simple_repeat Simple_repeat 2 27 0 8042 141 12 35 chr12 56874210 56874810 -87407679 - ERVL LTR ERVL -331 5433 4821 2214 126 7 0 chr12 56874810 56875104 -87407385 + AluSx SINE Alu 1 296 -16 8042 141 12 35 chr12 56875104 56875897 -87406592 - ERVL LTR ERVL -943 4821 4072 7378 48 12 12 chr12 56875902 56877289 -87405200 - L1PA6 LINE L1 0 6154 4762 515 135 42 10 chr12 56877289 56877379 -87405110 - L1P5 LINE L1 -585 5571 5479 922 115 61 14 chr12 56877379 56877527 -87404962 - AluSg/x SINE Alu 0 310 156 1222 91 83 0 chr12 56877527 56877819 -87404670 - L1P5 LINE L1 -665 5491 5179 5078 188 62 2 chr12 56877819 56878577 -87403912 - ERVL LTR ERVL -1615 4039 3207 2312 112 0 3 chr12 56878577 56878880 -87403609 + AluSq SINE Alu 1 302 -11 5078 188 62 2 chr12 56878880 56879104 -87403385 - ERVL LTR ERVL -2447 3207 2998 625 172 0 0 chr12 56879105 56879204 -87403285 + FRAM SINE Alu 64 162 -14 951 171 37 0 chr12 56879205 56879369 -87403120 - ERVL LTR ERVL -2993 2771 2602 482 242 60 83 chr12 56879377 56879573 -87402916 + LTR26 LTR ERV1 357 547 -56 1899 166 3 3 chr12 56879573 56879881 -87402608 - AluJo SINE Alu -4 308 1 482 242 60 83 chr12 56879881 56879936 -87402553 + LTR26 LTR ERV1 547 602 -1 2666 158 62 4 chr12 56879936 56880436 -87402053 - ERVL LTR ERVL -4318 1446 918 2042 151 0 0 chr12 56880439 56880738 -87401751 - AluSx SINE Alu -13 299 1 679 177 104 0 chr12 56880740 56880889 -87401600 + L1M4 LINE L1 1030 1205 -5337 1583 196 3 7 chr12 56880889 56881174 -87401315 - AluJo SINE Alu -25 287 4 679 177 104 0 chr12 56881174 56881216 -87401273 + L1M4 LINE L1 1205 1241 -5301 276 74 86 123 chr12 56881217 56881261 -87401228 - MSTC LTR MaLR 0 428 384 198 0 0 0 chr12 56881261 56881283 -87401206 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2164 89 3 3 chr12 56881285 56881567 -87400922 - AluSx SINE Alu -30 282 1 276 74 86 123 chr12 56881567 56881600 -87400889 - MSTC LTR MaLR -45 383 351 2146 136 30 33 chr12 56881634 56881956 -87400533 - MSTC LTR MaLR -62 366 44 2167 123 3 0 chr12 56881956 56882248 -87400241 + AluSx SINE Alu 1 293 -19 2146 136 30 33 chr12 56882248 56882292 -87400197 - MSTC LTR MaLR -384 44 1 333 71 36 0 chr12 56882293 56882349 -87400140 + L1M4 LINE L1 1239 1296 -5246 822 150 0 23 chr12 56882360 56882493 -87399996 + FLAM_C SINE Alu 12 141 -2 2237 92 7 20 chr12 56882519 56882823 -87399666 + AluSp SINE Alu 1 300 -13 1942 157 0 3 chr12 56882830 56883116 -87399373 + AluJb SINE Alu 1 285 -27 761 107 16 0 chr12 56883116 56883237 -87399252 + (GGAA)n Simple_repeat Simple_repeat 1 123 0 2626 219 95 27 chr12 56883240 56883769 -87398720 + L1M4 LINE L1 1292 1784 -4862 2252 128 0 0 chr12 56883769 56884081 -87398408 + AluSx SINE Alu 1 312 0 2626 219 95 27 chr12 56884081 56884132 -87398357 + L1M4 LINE L1 1784 1830 -4816 715 192 0 8 chr12 56884132 56884262 -87398227 + FLAM_A SINE Alu 5 133 0 2626 219 95 27 chr12 56884262 56884609 -87397880 + L1M4 LINE L1 1830 2283 -4363 2254 118 3 0 chr12 56884615 56884921 -87397568 + AluSp SINE Alu 1 307 -6 414 228 138 0 chr12 56884935 56885181 -87397308 + L1M4 LINE L1 2484 2770 -3874 678 202 0 17 chr12 56885183 56885302 -87397187 + FLAM_C SINE Alu 3 119 -24 201 74 0 0 chr12 56885332 56885359 -87397130 + (A)n Simple_repeat Simple_repeat 1 27 0 431 238 12 12 chr12 56885359 56885523 -87396966 + L1M4 LINE L1 2752 2915 -3729 2194 116 3 3 chr12 56885528 56885831 -87396658 - AluSc SINE Alu -1 308 6 1873 167 0 17 chr12 56885836 56886136 -87396353 - AluJo SINE Alu -15 297 3 1147 214 0 35 chr12 56886191 56886292 -87396197 + L1M4 LINE L1 2924 3027 -3617 2115 115 44 3 chr12 56886292 56886588 -87395901 + AluSx SINE Alu 1 308 -4 1147 214 0 35 chr12 56886588 56886775 -87395714 + L1M4 LINE L1 3027 3202 -3442 2043 145 0 0 chr12 56886777 56887060 -87395429 + AluSx SINE Alu 1 283 -29 1064 128 0 0 chr12 56887060 56887209 -87395280 + AluSg/x SINE Alu 152 300 -10 1060 240 16 8 chr12 56887209 56887572 -87394917 + L1M4 LINE L1 3194 3559 -3085 704 215 8 0 chr12 56887590 56887720 -87394769 + FLAM_C SINE Alu 3 133 0 1355 181 15 55 chr12 56887734 56888005 -87394484 + AluJo SINE Alu 1 260 -52 506 199 7 7 chr12 56888008 56888144 -87394345 + L1M4 LINE L1 3637 3772 -2872 1524 142 18 106 chr12 56888144 56888233 -87394256 + AluJo SINE Alu 1 96 -216 1811 159 17 7 chr12 56888233 56888529 -87393960 - AluJo SINE Alu -13 299 1 1524 142 18 106 chr12 56888529 56888769 -87393720 + AluJo SINE Alu 96 301 -11 619 269 22 41 chr12 56889236 56889556 -87392933 + L1M4 LINE L1 3762 4075 -2569 781 115 0 73 chr12 56889556 56889748 -87392741 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 268 150 0 0 chr12 56889748 56889788 -87392701 + (TC)n Simple_repeat Simple_repeat 2 41 0 448 119 30 0 chr12 56890568 56890635 -87391854 - AluS SINE Alu -243 70 2 1293 104 0 16 chr12 56890655 56890837 -87391652 + AluSq SINE Alu 118 296 -17 317 331 15 15 chr12 56896184 56896320 -87386169 + MIR3 SINE MIR 14 149 -59 230 81 27 0 chr12 56899384 56899421 -87383068 + (GGA)n Simple_repeat Simple_repeat 1 38 0 522 0 0 0 chr12 56899911 56899969 -87382520 + (CA)n Simple_repeat Simple_repeat 1 58 0 575 279 77 36 chr12 56901622 56901869 -87380620 - MIR SINE MIR -4 258 2 275 305 97 30 chr12 56901883 56902035 -87380454 - MIR SINE MIR -62 146 3 273 260 68 14 chr12 56902123 56902269 -87380220 - L1ME4a LINE L1 0 6121 5968 729 192 0 0 chr12 56903189 56903309 -87379180 + AluJo/FLAM SINE Alu 2 121 -191 1207 129 6 0 chr12 56903309 56903479 -87379010 - AluSg/x SINE Alu -5 305 135 493 275 44 6 chr12 56903690 56903850 -87378639 - L1ME3A LINE L1 0 6170 6005 720 61 0 30 chr12 56904001 56904100 -87378389 - AluSc SINE Alu -8 301 206 2488 66 0 10 chr12 56905051 56905356 -87377133 - AluY SINE Alu -9 302 1 21 36 0 0 chr12 56907774 56907802 -87374687 + AT_rich Low_complexity Low_complexity 1 28 0 2368 93 0 3 chr12 56907913 56908214 -87374275 - AluSq SINE Alu -13 300 1 202 291 311 0 chr12 56908563 56908666 -87373823 + L3 LINE CR1 1440 1574 -3 1299 210 78 4 chr12 56909234 56909491 -87372998 + AluJb SINE Alu 6 281 -31 21 0 0 0 chr12 56909491 56909512 -87372977 + AT_rich Low_complexity Low_complexity 1 21 0 2121 128 0 7 chr12 56909512 56909816 -87372673 - AluSx SINE Alu -10 302 1 2342 105 3 10 chr12 56909881 56910187 -87372302 - AluSg SINE Alu -6 304 1 1712 172 43 4 chr12 56910192 56910471 -87372018 - AluJb SINE Alu -22 290 1 1800 172 17 0 chr12 56910510 56910525 -87371964 - AluJo SINE Alu -16 296 283 414 0 0 0 chr12 56910525 56910571 -87371918 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 1800 172 17 0 chr12 56910571 56910846 -87371643 - AluJo SINE Alu -29 283 1 710 184 9 0 chr12 56910847 56910961 -87371528 - FLAM_C SINE Alu -18 115 1 2211 125 3 0 chr12 56912246 56912543 -87369946 + AluSp SINE Alu 1 298 -15 1729 136 12 0 chr12 56912930 56913181 -87369308 + AluJb SINE Alu 42 295 -17 435 261 9 0 chr12 56913235 56913350 -87369139 + L1ME LINE L1 5600 5715 -447 189 0 0 0 chr12 56913352 56913373 -87369116 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1792 144 38 0 chr12 56913377 56913641 -87368848 - AluSx SINE Alu -37 275 2 1848 157 13 10 chr12 56913644 56913944 -87368545 - AluJb SINE Alu -11 301 1 2626 64 0 6 chr12 56913955 56914269 -87368220 - AluSx SINE Alu 0 312 1 2159 107 0 0 chr12 56914273 56914553 -87367936 - AluSx SINE Alu -8 304 25 1528 115 122 20 chr12 56914599 56914805 -87367684 - Tigger2 DNA MER2_type -110 2608 2362 225 0 0 0 chr12 56914805 56914830 -87367659 + (GGA)n Simple_repeat Simple_repeat 2 26 0 1528 115 122 20 chr12 56914830 56914919 -87367570 - Tigger2 DNA MER2_type -356 2362 2283 2274 111 10 0 chr12 56914919 56915217 -87367272 - AluSp SINE Alu -12 301 1 261 204 56 0 chr12 56915239 56915293 -87367196 - Tigger2 DNA MER2_type -2660 58 2 2307 83 4 0 chr12 56915771 56916069 -87366420 - AluSq SINE Alu 0 304 6 444 257 173 16 chr12 56917264 56917513 -87364976 - L1MC4a LINE L1 -1935 5873 5586 284 331 68 38 chr12 56918129 56918262 -87364227 - MIR SINE MIR -77 185 49 181 0 0 0 chr12 56918262 56918282 -87364207 + (TTTTG)n Simple_repeat Simple_repeat 3 180 0 2293 79 0 0 chr12 56918282 56918562 -87363927 - AluY SINE Alu -30 281 2 2096 130 0 0 chr12 56918571 56918871 -87363618 - AluSx SINE Alu -11 301 2 2079 276 108 14 chr12 56919298 56919870 -87362619 - L2 LINE L2 0 3313 2796 2079 91 7 3 chr12 56919870 56920155 -87362334 + AluSq SINE Alu 14 299 -14 2079 276 108 14 chr12 56920155 56920596 -87361893 - L2 LINE L2 -517 2796 2209 1018 201 14 14 chr12 56920635 56920854 -87361635 - AluJb SINE Alu -93 219 1 933 243 31 42 chr12 56920854 56921109 -87361380 - L2 LINE L2 -1094 2220 1967 2031 115 0 0 chr12 56921109 56921405 -87361084 + AluY SINE Alu 7 302 -9 933 243 31 42 chr12 56921405 56921437 -87361052 - L2 LINE L2 -1347 1967 1936 1320 112 0 5 chr12 56921534 56921730 -87360759 - AluSx SINE Alu -117 195 1 1977 150 0 0 chr12 56922201 56922507 -87359982 + AluSx SINE Alu 1 306 -6 534 113 0 0 chr12 56922594 56922665 -87359824 + AluJ/FLAM SINE Alu 2 72 -240 769 177 113 0 chr12 56927365 56927506 -87354983 + MER5A DNA MER1_type 32 188 -1 2278 76 0 3 chr12 56928819 56929108 -87353381 + AluSq SINE Alu 3 290 -23 232 222 278 11 chr12 56929779 56929869 -87352620 - MIR SINE MIR -62 146 33 2267 89 3 0 chr12 56930028 56930331 -87352158 + AluSp SINE Alu 1 304 -9 220 367 0 0 chr12 56930372 56930451 -87352038 + L3 LINE CR1 941 1019 -558 343 262 152 70 chr12 56930515 56930561 -87351928 + L3 LINE CR1 1188 1229 -348 2277 89 0 7 chr12 56930561 56930863 -87351626 + AluSx SINE Alu 1 300 -12 343 262 152 70 chr12 56930863 56931060 -87351429 + L3 LINE CR1 1229 1451 -126 254 304 71 42 chr12 56931070 56931238 -87351251 - MIR SINE MIR 0 262 90 280 333 54 9 chr12 56931273 56931384 -87351105 + L3 LINE CR1 1459 1574 -3 1033 127 13 0 chr12 56931796 56931954 -87350535 - AluSq SINE Alu -18 295 136 207 0 0 0 chr12 56932228 56932251 -87350238 + (T)n Simple_repeat Simple_repeat 1 23 0 205 80 0 0 chr12 56932318 56932343 -87350146 + (T)n Simple_repeat Simple_repeat 1 25 0 210 37 0 0 chr12 56932363 56932390 -87350099 + (C)n Simple_repeat Simple_repeat 1 27 0 23 54 0 0 chr12 56932876 56932913 -87349576 + GC_rich Low_complexity Low_complexity 1 37 0 26 36 0 0 chr12 56933026 56933054 -87349435 + GC_rich Low_complexity Low_complexity 1 28 0 217 35 0 175 chr12 56933101 56933158 -87349331 + (G)n Simple_repeat Simple_repeat 1 47 0 207 0 0 0 chr12 56933202 56933225 -87349264 + (G)n Simple_repeat Simple_repeat 1 23 0 198 0 0 0 chr12 56933346 56933368 -87349121 + (G)n Simple_repeat Simple_repeat 1 22 0 209 167 0 0 chr12 56933433 56933463 -87349026 + A-rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr12 56933510 56933533 -87348956 + (G)n Simple_repeat Simple_repeat 1 23 0 24 39 0 0 chr12 56933619 56933645 -87348844 + GC_rich Low_complexity Low_complexity 1 26 0 254 88 0 0 chr12 56933739 56933773 -87348716 + (G)n Simple_repeat Simple_repeat 1 34 0 263 394 0 21 chr12 56933794 56933888 -87348601 + G-rich Low_complexity Low_complexity 4 95 0 23 74 0 0 chr12 56934253 56934280 -87348209 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 56934329 56934351 -87348138 + GC_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr12 56934385 56934411 -87348078 + (G)n Simple_repeat Simple_repeat 1 26 0 23 40 0 0 chr12 56934411 56934436 -87348053 + AT_rich Low_complexity Low_complexity 1 25 0 290 234 0 0 chr12 56934436 56934483 -87348006 + G-rich Low_complexity Low_complexity 1 47 0 234 0 0 0 chr12 56934508 56934534 -87347955 + (G)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr12 56934545 56934572 -87347917 + AT_rich Low_complexity Low_complexity 1 27 0 225 0 0 0 chr12 56934651 56934676 -87347813 + (T)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chr12 56934692 56934715 -87347774 + (T)n Simple_repeat Simple_repeat 1 23 0 42 0 0 0 chr12 56934811 56934853 -87347636 + AT_rich Low_complexity Low_complexity 1 42 0 22 154 0 0 chr12 56934914 56934953 -87347536 + AT_rich Low_complexity Low_complexity 1 39 0 236 444 0 0 chr12 56935477 56935549 -87346940 + G-rich Low_complexity Low_complexity 1 72 0 298 130 0 0 chr12 56935571 56935617 -87346872 + (A)n Simple_repeat Simple_repeat 1 46 0 26 0 0 0 chr12 56935723 56935749 -87346740 + AT_rich Low_complexity Low_complexity 1 26 0 21 43 0 0 chr12 56936163 56936186 -87346303 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr12 56936774 56936796 -87345693 + (G)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr12 56936824 56936845 -87345644 + GC_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr12 56937080 56937106 -87345383 + (T)n Simple_repeat Simple_repeat 1 26 0 183 42 0 0 chr12 56937169 56937193 -87345296 + (A)n Simple_repeat Simple_repeat 1 24 0 35 0 0 0 chr12 56937194 56937229 -87345260 + GC_rich Low_complexity Low_complexity 1 35 0 186 125 0 0 chr12 56937229 56937253 -87345236 + (T)n Simple_repeat Simple_repeat 1 24 0 209 103 0 0 chr12 56937253 56937282 -87345207 + (A)n Simple_repeat Simple_repeat 1 29 0 33 0 0 0 chr12 56937309 56937342 -87345147 + AT_rich Low_complexity Low_complexity 1 33 0 227 67 0 0 chr12 56937382 56937412 -87345077 + (G)n Simple_repeat Simple_repeat 1 30 0 33 100 0 0 chr12 56937520 56937580 -87344909 + GC_rich Low_complexity Low_complexity 1 60 0 25 69 0 0 chr12 56937600 56937629 -87344860 + AT_rich Low_complexity Low_complexity 1 29 0 260 339 0 0 chr12 56937769 56937831 -87344658 + polypurine Low_complexity Low_complexity 2 63 0 217 244 49 0 chr12 56938027 56938109 -87344380 + G-rich Low_complexity Low_complexity 6 91 0 1045 175 5 0 chr12 56938343 56938537 -87343952 + AluSp SINE Alu 98 292 -21 1067 187 26 15 chr12 56939026 56939294 -87343195 - AluSx SINE Alu -26 286 16 606 158 18 9 chr12 56939589 56939703 -87342786 - AluSc SINE Alu -190 119 5 2046 125 0 0 chr12 56939856 56940151 -87342338 + AluSx SINE Alu 1 295 -17 2101 138 163 37 chr12 56940209 56940655 -87341834 + Charlie1 DNA MER1_type 2189 2708 -53 1717 173 0 20 chr12 56940655 56940961 -87341528 - AluJo SINE Alu -12 300 1 2101 138 163 37 chr12 56940961 56941023 -87341466 + Charlie1 DNA MER1_type 2708 2761 0 2018 126 10 0 chr12 56941933 56942234 -87340255 + AluSq SINE Alu 1 304 -9 2412 77 0 3 chr12 56942235 56942547 -87339942 + AluY SINE Alu 1 311 0 1449 156 13 57 chr12 56942725 56943026 -87339463 + AluJo SINE Alu 1 288 -24 1600 184 3 0 chr12 56943367 56943655 -87338834 - AluJo SINE Alu -23 289 1 2023 123 3 10 chr12 56943794 56944096 -87338393 + AluSx SINE Alu 1 300 -12 1651 85 55 0 chr12 56944532 56944768 -87337721 - AluSq SINE Alu -8 305 57 863 108 0 0 chr12 56944768 56944888 -87337601 - AluSp SINE Alu -193 120 1 499 269 86 56 chr12 56945240 56945474 -87337015 - MIR SINE MIR -12 250 10 208 207 0 52 chr12 56945493 56945551 -87336938 - L2 LINE L2 -208 3064 3010 1653 183 91 59 chr12 56945625 56945715 -87336774 + MER47B DNA MER2_type 1 87 -2236 2165 105 3 16 chr12 56945715 56946029 -87336460 + AluSx SINE Alu 1 310 -2 1653 183 91 59 chr12 56946029 56946343 -87336146 + MER47B DNA MER2_type 87 418 0 796 213 17 11 chr12 56947554 56947589 -87334900 - MER3 DNA MER1_type 0 209 176 1767 139 11 0 chr12 56947589 56947891 -87334598 - AluSx SINE Alu 0 305 1 796 213 17 11 chr12 56947891 56948028 -87334461 - MER3 DNA MER1_type -33 176 35 1838 129 16 29 chr12 56948028 56948337 -87334152 + AluSx SINE Alu 1 305 -7 2104 114 3 0 chr12 56948341 56948640 -87333849 + AluSx SINE Alu 1 300 -12 1482 194 15 7 chr12 56948830 56949103 -87333386 + AluJb SINE Alu 1 275 -37 26 0 0 0 chr12 56949177 56949203 -87333286 + AT_rich Low_complexity Low_complexity 1 26 0 1358 169 165 4 chr12 56949203 56949458 -87333031 + AluJo SINE Alu 1 296 -6 1587 159 7 22 chr12 56949642 56949782 -87332707 + AluJo SINE Alu 10 151 -158 1747 120 205 35 chr12 56949782 56949981 -87332508 - MSTA LTR MaLR 0 428 264 2371 64 0 3 chr12 56949981 56950277 -87332212 - AluY SINE Alu -16 295 1 1747 120 205 35 chr12 56950277 56950443 -87332046 - MSTA LTR MaLR -164 264 1 1587 159 7 22 chr12 56950443 56950606 -87331883 + AluJo SINE Alu 151 309 0 2060 127 0 0 chr12 56950750 56951041 -87331448 + AluSx SINE Alu 1 291 -21 285 167 0 0 chr12 56951135 56951189 -87331300 + A-rich Low_complexity Low_complexity 1 54 0 297 313 20 10 chr12 56951305 56951404 -87331085 - MIR SINE MIR -77 131 32 424 199 319 7 chr12 56951417 56951558 -87330931 + MIR SINE MIR 23 207 -55 1334 111 5 5 chr12 56951564 56951763 -87330726 + AluSx SINE Alu 1 199 -113 312 160 20 0 chr12 56951915 56951965 -87330524 - Alu SINE Alu -250 52 2 516 265 86 56 chr12 56952318 56952552 -87329937 - MIR SINE MIR -12 250 10 208 207 0 52 chr12 56952571 56952629 -87329860 - L2 LINE L2 -208 3064 3010 1654 181 94 59 chr12 56952703 56952793 -87329696 + MER47B DNA MER2_type 1 86 -2237 2149 108 3 16 chr12 56952793 56953107 -87329382 + AluSx SINE Alu 1 310 -2 1654 181 94 59 chr12 56953107 56953420 -87329069 + MER47B DNA MER2_type 86 418 0 289 197 14 70 chr12 56954680 56954751 -87327738 - AluSc SINE Alu -3 296 230 534 181 0 0 chr12 56954872 56954966 -87327523 - AluS SINE Alu -212 101 8 577 224 8 0 chr12 56954976 56955110 -87327379 - MER3 DNA MER1_type -87 122 35 1878 101 62 3 chr12 56955110 56955398 -87327091 + AluSq SINE Alu 1 305 -8 1297 175 4 8 chr12 56955522 56955774 -87326715 - AluSx SINE Alu -20 292 42 2165 72 7 0 chr12 56956333 56956643 -87325846 + AluSg SINE Alu 1 312 0 2135 88 17 3 chr12 56956834 56957129 -87325360 + AluSp SINE Alu 1 299 -14 328 294 5 108 chr12 56957239 56957360 -87325129 + MER5A DNA MER1_type 1 96 -93 1360 182 31 10 chr12 56957360 56957651 -87324838 + AluJo SINE Alu 1 297 -15 328 294 5 108 chr12 56957651 56957723 -87324766 + MER5A DNA MER1_type 96 174 -15 549 170 21 0 chr12 56957947 56958041 -87324448 - AluJ/FLAM SINE Alu -215 97 2 204 347 14 0 chr12 56958280 56958352 -87324137 + MIR SINE MIR 188 260 -2 21 0 0 0 chr12 56960374 56960395 -87322094 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr12 56960474 56960521 -87321968 + GC_rich Low_complexity Low_complexity 1 47 0 233 245 51 51 chr12 56961053 56961151 -87321338 - L2 LINE L2 -6 3307 3210 542 278 105 15 chr12 56961419 56961623 -87320866 + MIR SINE MIR 50 260 -2 375 154 0 0 chr12 56961625 56961690 -87320799 + (CACCAT)n Simple_repeat Simple_repeat 5 69 0 378 0 0 0 chr12 56962534 56962576 -87319913 + (GA)n Simple_repeat Simple_repeat 1 42 0 699 272 41 10 chr12 56962707 56962902 -87319587 + MIR3 SINE MIR 1 201 -7 2005 147 0 6 chr12 56963267 56963581 -87318908 - AluJb SINE Alu 0 312 1 328 355 50 14 chr12 56963582 56963723 -87318766 - L2 LINE L2 -11 3261 3116 868 145 0 0 chr12 56963843 56963974 -87318515 + AluJo SINE Alu 1 131 -181 507 226 70 9 chr12 56964037 56964152 -87318337 - L2 LINE L2 0 3313 3192 1960 116 0 3 chr12 56964219 56964503 -87317986 - AluSq SINE Alu -30 283 1 812 145 5 150 chr12 56964520 56964713 -87317776 + AluJo SINE Alu 131 295 -17 850 209 83 47 chr12 56964714 56964991 -87317498 + L1M4 LINE L1 4833 5119 -1027 267 54 0 0 chr12 56964993 56965030 -87317459 + (TC)n Simple_repeat Simple_repeat 2 38 0 534 59 32 70 chr12 56965046 56965232 -87317257 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 39 0 0 0 chr12 56965232 56965271 -87317218 + AT_rich Low_complexity Low_complexity 1 39 0 1028 129 0 6 chr12 56965789 56965975 -87316514 + AluSg/x SINE Alu 120 304 0 821 151 24 0 chr12 56965977 56966103 -87316386 - AluJo SINE Alu -178 134 6 696 220 42 23 chr12 56966104 56966229 -87316260 - L1M4 LINE L1 -1306 4840 4708 2258 113 0 0 chr12 56966229 56966540 -87315949 - AluSq SINE Alu -2 311 1 696 220 42 23 chr12 56966540 56966628 -87315861 - L1M4 LINE L1 -1438 4708 4623 833 145 0 43 chr12 56966632 56966770 -87315719 - FLAM_C SINE Alu -1 132 1 280 149 0 160 chr12 56966796 56966890 -87315599 - L1M4 LINE L1 -1507 4639 4561 1022 188 46 9 chr12 56966894 56967112 -87315377 + AluJo SINE Alu 85 310 -2 888 189 86 4 chr12 56967112 56967345 -87315144 - L1M4 LINE L1 -1574 4572 4321 716 186 108 42 chr12 56967345 56967512 -87314977 - AluJo SINE Alu -13 299 122 801 202 34 84 chr12 56967512 56967659 -87314830 - L1M4 LINE L1 -1838 4308 4176 1690 174 3 26 chr12 56967659 56967969 -87314520 - AluJo SINE Alu -9 303 1 801 202 34 84 chr12 56967969 56968059 -87314430 - L1M4 LINE L1 -1970 4176 4083 1808 169 0 0 chr12 56968063 56968365 -87314124 - AluJb SINE Alu -10 302 1 261 167 0 0 chr12 56968535 56968589 -87313900 - L1MC4 LINE L1 -1 8041 7988 4241 219 92 11 chr12 56968593 56969226 -87313263 - L1MC4 LINE L1 -140 7902 7322 181 77 0 0 chr12 56969226 56969252 -87313237 + (TTTA)n Simple_repeat Simple_repeat 2 120 0 2305 87 0 3 chr12 56969252 56969538 -87312951 - AluSp SINE Alu -1 310 1 4241 219 92 11 chr12 56969538 56970038 -87312451 - L1MC4 LINE L1 -719 7323 6675 396 243 79 43 chr12 56970039 56970179 -87312310 - L1MC4 LINE L1 -1283 6759 6615 328 248 38 105 chr12 56970075 56970208 -87312281 + L1MC4 LINE L1 6579 6702 -1340 * 31 26 0 0 chr12 56970208 56970246 -87312243 + AT_rich Low_complexity Low_complexity 1 38 0 384 260 98 32 chr12 56970253 56970499 -87311990 - L1MC4a LINE L1 -1190 6618 6442 2249 121 0 0 chr12 56970772 56971077 -87311412 - AluSx SINE Alu -7 305 1 2287 128 0 10 chr12 56971433 56971745 -87310744 + AluSx SINE Alu 1 309 -3 255 337 47 41 chr12 56971745 56971914 -87310575 - L2 LINE L2 -510 2804 2635 2341 125 32 74 chr12 56972020 56972224 -87310265 + MLT1C LTR MaLR 1 179 -288 2387 92 0 13 chr12 56972224 56972529 -87309960 + AluSx SINE Alu 1 301 -11 2341 125 32 74 chr12 56972529 56972756 -87309733 + MLT1C LTR MaLR 179 414 -53 180 97 0 0 chr12 56972756 56972787 -87309702 + (TTAG)n Simple_repeat Simple_repeat 2 32 0 736 250 6 0 chr12 56972789 56972945 -87309544 - AluJo SINE Alu -30 282 126 2258 114 3 10 chr12 56972947 56973255 -87309234 - AluSq SINE Alu -6 307 2 345 209 0 0 chr12 56973255 56973322 -87309167 + MLT1B LTR MaLR 324 390 0 527 281 22 0 chr12 56973326 56973461 -87309028 + MIR SINE MIR 81 218 -44 205 182 0 0 chr12 56975157 56975190 -87307299 + (CA)n Simple_repeat Simple_repeat 2 34 0 2340 103 0 28 chr12 56975440 56975761 -87306728 + AluSx SINE Alu 1 312 0 2086 155 3 0 chr12 56975942 56976251 -87306238 - AluSx SINE Alu -2 310 1 2129 88 0 88 chr12 56976268 56976425 -87306064 - AluSx SINE Alu -22 290 174 351 0 0 0 chr12 56976425 56976464 -87306025 + (TG)n Simple_repeat Simple_repeat 2 40 0 2129 88 0 88 chr12 56976464 56976624 -87305865 - AluSx SINE Alu -138 174 1 812 168 102 0 chr12 56976869 56977080 -87305409 - AluJb SINE Alu 0 356 132 387 289 78 7 chr12 56977087 56977229 -87305260 - MIR SINE MIR -70 192 41 208 269 0 26 chr12 56978138 56978216 -87304273 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 382 343 72 24 chr12 56978672 56978879 -87303610 - L3 LINE CR1 -26 1551 1335 753 231 172 5 chr12 56979395 56979598 -87302891 - MIR SINE MIR -6 256 20 193 255 0 0 chr12 56981546 56981593 -87300896 - L2 LINE L2 -18 3254 3208 288 320 17 20 chr12 56982090 56982281 -87300208 + GA-rich Low_complexity Low_complexity 1 190 0 183 139 0 0 chr12 56982430 56982466 -87300023 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 214 294 16 40 chr12 56982480 56982606 -87299883 + GA-rich Low_complexity Low_complexity 3 125 0 225 0 0 0 chr12 56984426 56984451 -87298038 + (CA)n Simple_repeat Simple_repeat 2 26 0 394 257 44 87 chr12 56984478 56984620 -87297869 + MIR3 SINE MIR 10 142 -66 785 131 0 36 chr12 56984620 56984757 -87297732 + FLAM_C SINE Alu 1 132 -1 394 257 44 87 chr12 56984757 56984820 -87297669 + MIR3 SINE MIR 142 206 -2 215 262 60 12 chr12 56985708 56985792 -87296697 + L3b LINE CR1 1322 1409 -174 315 0 0 0 chr12 56985835 56985870 -87296619 + (CA)n Simple_repeat Simple_repeat 1 35 0 539 278 88 5 chr12 56986552 56986744 -87295745 - MIR SINE MIR -41 221 15 201 191 175 0 chr12 56986853 56986916 -87295573 + MIR SINE MIR 81 154 -108 468 35 0 0 chr12 56987455 56987513 -87294976 + (CA)n Simple_repeat Simple_repeat 2 59 0 342 0 0 0 chr12 56988088 56988126 -87294363 + (TG)n Simple_repeat Simple_repeat 1 38 0 251 258 239 13 chr12 56988601 56988756 -87293733 - MIR SINE MIR -28 234 45 186 43 0 0 chr12 56989002 56989025 -87293464 + (CGG)n Simple_repeat Simple_repeat 2 24 0 244 336 7 14 chr12 56989185 56989328 -87293161 + GA-rich Low_complexity Low_complexity 1 142 0 22 0 0 0 chr12 56989433 56989455 -87293034 + GC_rich Low_complexity Low_complexity 1 22 0 201 94 0 0 chr12 56990094 56990126 -87292363 + (TG)n Simple_repeat Simple_repeat 2 33 0 209 337 0 0 chr12 56990575 56990661 -87291828 + (CA)n Simple_repeat Simple_repeat 2 87 0 672 290 111 24 chr12 56991255 56991589 -87290900 + MARNA DNA Mariner 164 526 -60 260 70 23 0 chr12 56992180 56992223 -87290266 + (CA)n Simple_repeat Simple_repeat 1 44 0 244 276 21 21 chr12 56992570 56992715 -87289774 + (TCTCTG)n Simple_repeat Simple_repeat 2 146 0 200 200 0 0 chr12 56993683 56993718 -87288771 + CT-rich Low_complexity Low_complexity 3 37 0 183 269 75 30 chr12 56994704 56994771 -87287718 - MIR SINE MIR -104 104 35 261 0 0 0 chr12 56997099 56997128 -87285361 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 210 248 135 30 chr12 56998550 56998683 -87283806 + MIR3 SINE MIR 31 177 -31 2458 93 0 13 chr12 56999000 56999313 -87283176 + AluSg SINE Alu 1 309 -1 2442 86 0 0 chr12 56999462 56999765 -87282724 + AluY SINE Alu 1 303 -8 441 308 6 16 chr12 57000225 57000407 -87282082 + (CA)n Simple_repeat Simple_repeat 1 180 0 196 324 45 18 chr12 57000420 57000531 -87281958 + L2 LINE L2 1419 1532 -1782 213 231 15 62 chr12 57000697 57000762 -87281727 - L2 LINE L2 0 3272 3211 564 243 77 0 chr12 57000788 57000957 -87281532 + MIR SINE MIR 7 188 -74 358 67 0 33 chr12 57001176 57001236 -87281253 + (CCCCCG)n Simple_repeat Simple_repeat 3 60 0 215 312 0 0 chr12 57001940 57002017 -87280472 + CT-rich Low_complexity Low_complexity 1 77 0 399 21 0 0 chr12 57005963 57006011 -87276478 + (CA)n Simple_repeat Simple_repeat 2 49 0 1616 123 44 75 chr12 57006243 57006567 -87275922 + AluSx SINE Alu 1 315 0 196 312 54 0 chr12 57006567 57006660 -87275829 + L2 LINE L2 2379 2476 -838 2140 148 3 0 chr12 57006713 57007010 -87275479 - AluJb SINE Alu -14 298 1 684 281 171 12 chr12 57007801 57008146 -87274343 + MLT1J2 LTR MaLR 51 450 0 332 329 13 20 chr12 57008210 57008272 -87274217 + MIR SINE MIR 7 68 -194 2255 124 0 0 chr12 57008272 57008571 -87273918 + AluSx SINE Alu 1 299 -13 332 329 13 20 chr12 57008571 57008660 -87273829 + MIR SINE MIR 68 157 -105 233 195 0 0 chr12 57008951 57008992 -87273497 + L2 LINE L2 3210 3250 -22 1805 167 7 7 chr12 57009085 57009378 -87273111 - AluJb SINE Alu -19 293 1 310 260 276 0 chr12 57009379 57009506 -87272983 + MIR SINE MIR 95 256 -6 666 317 85 31 chr12 57009905 57010244 -87272245 - MLT1J2 LTR MaLR 0 450 84 2592 65 0 3 chr12 57010244 57010554 -87271935 + AluY SINE Alu 1 309 -2 666 317 85 31 chr12 57010554 57010627 -87271862 - MLT1J2 LTR MaLR -366 84 16 2251 120 3 0 chr12 57010721 57011050 -87271439 - AluSx SINE Alu 0 312 1 528 313 15 15 chr12 57011075 57011276 -87271213 - MLT1I LTR MaLR -26 383 183 336 171 295 0 chr12 57011460 57011565 -87270924 - MER117 DNA MER1_type -28 169 34 43 64 0 0 chr12 57011749 57011827 -87270662 + AT_rich Low_complexity Low_complexity 1 78 0 669 259 112 7 chr12 57012020 57012233 -87270256 + MIR SINE MIR 30 260 -2 220 358 92 12 chr12 57013162 57013335 -87269154 + MIR SINE MIR 5 191 -71 216 286 29 0 chr12 57016711 57016781 -87265708 - L3 LINE CR1 -3 1574 1503 557 200 89 15 chr12 57016838 57016973 -87265516 + MIR SINE MIR 47 191 -71 1199 133 0 0 chr12 57016982 57017148 -87265341 + AluSg/x SINE Alu 137 302 -10 207 289 0 0 chr12 57017151 57017203 -87265286 + MIR SINE MIR 211 262 0 712 266 50 13 chr12 57017964 57018226 -87264263 + MER33 DNA MER1_type 1 257 -67 257 87 43 0 chr12 57018216 57018262 -87264227 - Alu SINE Alu 0 302 255 * 381 242 99 93 chr12 57018335 57018436 -87264053 - MIR SINE MIR -70 192 88 887 184 12 18 chr12 57018436 57018604 -87263885 + FAM SINE Alu 1 167 -8 381 242 99 93 chr12 57018604 57018663 -87263826 - MIR SINE MIR -174 88 31 416 269 95 61 chr12 57020197 57020461 -87262028 - L3 LINE CR1 -139 1438 1166 1665 172 66 0 chr12 57020683 57021003 -87261486 + MER58B DNA MER1_type 1 341 0 2163 126 7 0 chr12 57021633 57021934 -87260555 - AluSp SINE Alu -10 303 1 1044 173 20 50 chr12 57021935 57022137 -87260352 + AluJo SINE Alu 103 298 -14 2368 86 3 0 chr12 57022301 57022593 -87259896 - AluSx SINE Alu -17 295 3 2190 136 0 0 chr12 57022761 57023062 -87259427 + AluSx SINE Alu 1 301 -11 1910 142 17 10 chr12 57023311 57023606 -87258883 - AluJo SINE Alu -15 297 1 1843 118 65 0 chr12 57023667 57023953 -87258536 + AluSc SINE Alu 1 303 0 608 221 40 27 chr12 57023982 57024057 -87258432 + MER58 DNA MER1_type 4 77 -2343 2028 153 0 19 chr12 57024057 57024371 -87258118 - AluSx SINE Alu -4 308 1 608 221 40 27 chr12 57024371 57024444 -87258045 + MER58 DNA MER1_type 77 154 -2266 2187 127 0 0 chr12 57024453 57024752 -87257737 - AluSx SINE Alu -12 300 2 2231 114 0 13 chr12 57024759 57025066 -87257423 - AluSx SINE Alu -9 303 1 2178 119 13 3 chr12 57025189 57025492 -87256997 + AluSx SINE Alu 1 306 -6 193 255 0 0 chr12 57026290 57026337 -87256152 - L2 LINE L2 -18 3254 3208 302 317 17 20 chr12 57026834 57027025 -87255464 + GA-rich Low_complexity Low_complexity 1 190 0 183 139 0 0 chr12 57027174 57027210 -87255279 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 214 315 15 31 chr12 57027222 57027352 -87255137 + GA-rich Low_complexity Low_complexity 2 129 0 225 0 0 0 chr12 57029175 57029200 -87253289 + (CA)n Simple_repeat Simple_repeat 2 26 0 394 257 44 87 chr12 57029227 57029369 -87253120 + MIR3 SINE MIR 10 142 -66 785 131 0 36 chr12 57029369 57029506 -87252983 + FLAM_C SINE Alu 1 132 -1 394 257 44 87 chr12 57029506 57029569 -87252920 + MIR3 SINE MIR 142 206 -2 215 262 60 12 chr12 57030456 57030540 -87251949 + L3b LINE CR1 1322 1409 -174 315 0 0 0 chr12 57030583 57030618 -87251871 + (CA)n Simple_repeat Simple_repeat 1 35 0 539 278 88 5 chr12 57031300 57031492 -87250997 - MIR SINE MIR -41 221 15 201 191 175 0 chr12 57031601 57031664 -87250825 + MIR SINE MIR 81 154 -108 468 35 0 0 chr12 57032203 57032261 -87250228 + (CA)n Simple_repeat Simple_repeat 2 59 0 342 0 0 0 chr12 57032836 57032874 -87249615 + (TG)n Simple_repeat Simple_repeat 1 38 0 251 258 239 13 chr12 57033349 57033504 -87248985 - MIR SINE MIR -28 234 45 186 43 0 0 chr12 57033749 57033772 -87248717 + (CGG)n Simple_repeat Simple_repeat 2 24 0 244 336 7 14 chr12 57033932 57034075 -87248414 + GA-rich Low_complexity Low_complexity 1 142 0 23 86 0 0 chr12 57034180 57034238 -87248251 + GC_rich Low_complexity Low_complexity 1 58 0 201 94 0 0 chr12 57034843 57034875 -87247614 + (TG)n Simple_repeat Simple_repeat 2 33 0 209 337 0 0 chr12 57035324 57035410 -87247079 + (CA)n Simple_repeat Simple_repeat 2 87 0 672 290 111 24 chr12 57036003 57036337 -87246152 + MARNA DNA Mariner 164 526 -60 260 70 23 0 chr12 57036928 57036971 -87245518 + (CA)n Simple_repeat Simple_repeat 1 44 0 244 276 21 21 chr12 57037319 57037464 -87245025 + (TCTCTG)n Simple_repeat Simple_repeat 2 146 0 200 200 0 0 chr12 57038432 57038467 -87244022 + CT-rich Low_complexity Low_complexity 3 37 0 183 269 75 30 chr12 57039453 57039520 -87242969 - MIR SINE MIR -104 104 35 23 0 0 0 chr12 57040865 57040888 -87241601 + AT_rich Low_complexity Low_complexity 1 23 0 2193 27 0 0 chr12 57041275 57041538 -87240951 - L1P2 LINE L1 -487 5668 5406 1031 261 91 25 chr12 57041539 57042102 -87240387 + L1ME4a LINE L1 5518 6117 -4 2518 77 0 6 chr12 57042164 57042475 -87240014 + AluSc SINE Alu 1 309 0 196 191 43 0 chr12 57042483 57042530 -87239959 + MIR SINE MIR 211 259 -3 1120 119 0 6 chr12 57042590 57042788 -87239701 - AluSp SINE Alu 0 313 134 1767 161 24 3 chr12 57043123 57043421 -87239068 - AluJb SINE Alu -8 304 1 292 290 196 33 chr12 57043546 57043760 -87238729 + L2 LINE L2 3026 3274 -39 301 73 0 0 chr12 57043761 57043802 -87238687 + tRNA-Cys-TGC tRNA tRNA 1 41 -34 262 274 193 22 chr12 57043873 57044008 -87238481 - MIR SINE MIR -48 214 57 355 285 215 0 chr12 57047521 57047721 -87234768 - L3 LINE CR1 -94 1483 1241 651 206 0 8 chr12 57047723 57047849 -87234640 - AluJo/FRAM SINE Alu -17 295 171 1128 173 31 0 chr12 57047850 57048041 -87234448 - AluJo SINE Alu -94 218 22 295 75 19 0 chr12 57048083 57048136 -87234353 - AluSp/q SINE Alu -3 300 247 2234 83 0 4 chr12 57048136 57048414 -87234075 - AluY SINE Alu -34 277 1 2113 122 0 3 chr12 57048423 57048731 -87233758 - AluSx SINE Alu 0 307 1 247 368 0 9 chr12 57048823 57048929 -87233560 - L3 LINE CR1 -503 1074 970 2320 97 3 23 chr12 57048939 57049249 -87233240 - AluSx SINE Alu -8 304 1 787 298 167 38 chr12 57049249 57049843 -87232646 - L3 LINE CR1 -719 858 183 2011 121 22 48 chr12 57049977 57050153 -87232336 - AluSx SINE Alu -5 307 141 2886 7 0 0 chr12 57050153 57050456 -87232033 - AluYa5 SINE Alu -8 303 1 2011 121 22 48 chr12 57050456 57050594 -87231895 - AluSx SINE Alu -171 141 1 1922 145 17 10 chr12 57050598 57050887 -87231602 - AluJb SINE Alu -21 291 1 1932 153 7 0 chr12 57050925 57051219 -87231270 - AluJb SINE Alu -16 296 1 2125 108 14 0 chr12 57051236 57051532 -87230957 - AluSx SINE Alu -2 310 11 2111 144 3 3 chr12 57051669 57051981 -87230508 - AluSx SINE Alu 0 312 1 2069 140 0 22 chr12 57053086 57053401 -87229088 - AluSx SINE Alu -4 308 1 1652 190 61 0 chr12 57053441 57053720 -87228769 + AluJb SINE Alu 1 296 -16 2175 134 3 10 chr12 57053773 57054086 -87228403 - AluSx SINE Alu -1 311 1 2400 87 3 10 chr12 57054638 57054949 -87227540 - AluSq SINE Alu -4 309 1 183 314 153 54 chr12 57055290 57055322 -87227167 - L2 LINE L2 -575 2739 2712 1900 158 0 20 chr12 57055322 57055625 -87226864 + AluJo SINE Alu 1 297 -15 183 314 153 54 chr12 57055625 57055978 -87226511 - L2 LINE L2 -602 2712 2316 633 128 80 16 chr12 57059045 57059170 -87223319 - AluSc SINE Alu -47 262 130 201 211 0 0 chr12 57060759 57060811 -87221678 + (CA)n Simple_repeat Simple_repeat 2 53 0 206 283 0 0 chr12 57062650 57062696 -87219793 + C-rich Low_complexity Low_complexity 4 49 0 240 322 41 48 chr12 57063927 57064073 -87218416 + L2 LINE L2 3127 3271 -1 1801 85 9 0 chr12 57064229 57064453 -87218036 - AluSg/x SINE Alu -2 308 83 507 301 87 33 chr12 57064855 57064947 -87217542 - L2 LINE L2 0 3313 3227 1561 168 19 48 chr12 57064947 57065073 -87217416 + AluJo SINE Alu 1 129 -183 2218 95 3 7 chr12 57065073 57065368 -87217121 - AluSg SINE Alu -16 294 1 1561 168 19 48 chr12 57065368 57065551 -87216938 + AluJo SINE Alu 129 301 -11 507 301 87 33 chr12 57065551 57065809 -87216680 - L2 LINE L2 -86 3227 2406 501 192 0 0 chr12 57065816 57065894 -87216595 - MER2 DNA MER2_type 0 345 268 2385 105 3 0 chr12 57065922 57066227 -87216262 + AluSx SINE Alu 1 306 -6 183 316 60 15 chr12 57066235 57066368 -87216121 - L2 LINE L2 -1141 2173 2035 809 142 0 0 chr12 57066610 57066723 -87215766 + FLAM_C SINE Alu 6 118 -25 2288 112 10 0 chr12 57066736 57067040 -87215449 + AluSx SINE Alu 1 307 -5 1071 207 72 10 chr12 57067177 57067386 -87215103 + MER33 DNA MER1_type 1 236 -2349 2364 74 0 17 chr12 57067386 57067683 -87214806 - AluSg SINE Alu -18 292 1 1071 207 72 10 chr12 57067683 57067778 -87214711 + MER33 DNA MER1_type 236 324 0 690 168 0 8 chr12 57067978 57068097 -87214392 + FLAM_C SINE Alu 1 118 -15 335 276 126 8 chr12 57068444 57068571 -87213918 + MIR SINE MIR 106 247 -15 408 333 23 8 chr12 57068651 57068780 -87213709 - L3 LINE CR1 -1 1576 1446 937 109 0 0 chr12 57069135 57069254 -87213235 + AluSq/x SINE Alu 1 119 -194 633 128 80 16 chr12 57069609 57069734 -87212755 - AluSc SINE Alu -47 262 130 201 211 0 0 chr12 57071323 57071375 -87211114 + (CA)n Simple_repeat Simple_repeat 2 53 0 389 292 0 0 chr12 57073150 57073246 -87209243 - L1MC4 LINE L1 -1339 6703 6609 635 159 164 95 chr12 57073296 57073372 -87209117 + MER58C DNA MER1_type 6 75 -2345 2221 79 10 0 chr12 57073372 57073663 -87208826 + AluSq SINE Alu 1 294 -19 635 159 164 95 chr12 57073663 57073775 -87208714 + MER58C DNA MER1_type 75 207 -8 1227 156 44 100 chr12 57074202 57074372 -87208117 - AluSx SINE Alu -9 303 158 233 0 62 0 chr12 57074372 57074404 -87208085 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1227 156 44 100 chr12 57074404 57074554 -87207935 - AluSx SINE Alu -154 158 1 2248 95 0 3 chr12 57074564 57074870 -87207619 - AluY SINE Alu -5 306 2 473 52 0 0 chr12 57074870 57074928 -87207561 - AluSq/x SINE Alu -177 135 78 1336 150 0 5 chr12 57074928 57075141 -87207348 - AluSx SINE Alu -100 212 1 424 314 23 23 chr12 57076270 57076445 -87206044 + L2 LINE L2 2565 2739 -575 402 48 32 63 chr12 57076697 57076760 -87205729 + AluY SINE Alu 226 286 -25 342 0 0 0 chr12 57076784 57076822 -87205667 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1561 140 8 16 chr12 57076839 57077089 -87205400 - AluSx SINE Alu -64 248 1 2214 104 3 0 chr12 57077114 57077423 -87205066 + AluSx SINE Alu 1 310 -2 2502 235 30 13 chr12 57077427 57078117 -87204372 + L1MC1 LINE L1 2436 3137 -3009 1465 196 70 11 chr12 57078124 57078409 -87204080 + AluJo SINE Alu 1 302 0 1501 83 0 46 chr12 57078410 57078628 -87203861 + AluSc SINE Alu 89 296 -13 776 165 0 0 chr12 57078638 57078759 -87203730 + FLAM_C SINE Alu 2 122 -21 1339 178 20 77 chr12 57078782 57078859 -87203630 + L1MC1 LINE L1 4735 4815 -1331 2217 71 3 23 chr12 57078859 57079167 -87203322 - AluY SINE Alu -9 302 1 1339 178 20 77 chr12 57079167 57079438 -87203051 + L1MC1 LINE L1 4815 5063 -1083 3313 109 33 2 chr12 57079445 57079902 -87202587 + MER1A DNA MER1_type 59 529 0 5479 145 22 55 chr12 57079921 57080275 -87202214 + L1MC1 LINE L1 5080 5444 -889 2026 96 0 7 chr12 57080275 57080555 -87201934 - AluSx SINE Alu -24 288 11 5479 145 22 55 chr12 57080555 57081276 -87201213 + L1MC1 LINE L1 5444 6070 -263 1814 152 0 11 chr12 57081276 57081559 -87200930 - AluJb SINE Alu -32 280 1 5479 145 22 55 chr12 57081559 57081815 -87200674 + L1MC1 LINE L1 6070 6333 0 276 154 0 0 chr12 57083067 57083119 -87199370 + (CA)n Simple_repeat Simple_repeat 1 52 0 2177 118 0 0 chr12 57083369 57083675 -87198814 + AluSx SINE Alu 2 307 -5 1870 157 0 3 chr12 57083686 57083979 -87198510 + AluJo SINE Alu 1 292 -20 25 31 0 0 chr12 57084095 57084127 -87198362 + AT_rich Low_complexity Low_complexity 1 32 0 2234 87 3 10 chr12 57084465 57084776 -87197713 - AluSq SINE Alu -4 309 1 1747 157 0 20 chr12 57085149 57085449 -87197040 + AluJo SINE Alu 1 294 -18 208 321 155 48 chr12 57085515 57085805 -87196684 - L2 LINE L2 -678 2636 2316 667 128 80 16 chr12 57088872 57088997 -87193492 - AluSc SINE Alu -47 262 130 201 211 0 0 chr12 57090587 57090639 -87191850 + (CA)n Simple_repeat Simple_repeat 2 53 0 206 283 0 0 chr12 57092479 57092525 -87189964 + C-rich Low_complexity Low_complexity 4 49 0 180 327 82 45 chr12 57093202 57093312 -87189177 + MIR SINE MIR 26 139 -69 279 294 145 67 chr12 57093647 57093902 -87188587 + L2 LINE L2 2997 3271 -1 1686 85 9 0 chr12 57094058 57094282 -87188207 - AluSg/x SINE Alu -2 308 83 557 237 7 44 chr12 57094684 57094776 -87187713 - L2 LINE L2 0 3313 3226 1409 168 19 48 chr12 57094776 57094902 -87187587 + AluJo SINE Alu 1 129 -183 2064 95 3 7 chr12 57094902 57095197 -87187292 - AluSg SINE Alu -16 294 1 1409 168 19 48 chr12 57095197 57095380 -87187109 + AluJo SINE Alu 129 301 -11 557 237 7 44 chr12 57095380 57095422 -87187067 - L2 LINE L2 -87 3226 3184 332 333 160 14 chr12 57095425 57095638 -87186851 - L2 LINE L2 -665 2649 2406 521 192 0 0 chr12 57095645 57095723 -87186766 - MER2 DNA MER2_type 0 345 268 1552 165 49 18 chr12 57095751 57096036 -87186453 + AluSx SINE Alu 1 294 -18 2076 125 0 0 chr12 57096040 57096335 -87186154 + AluSx SINE Alu 1 295 -17 29 0 0 0 chr12 57096337 57096366 -87186123 + AT_rich Low_complexity Low_complexity 1 29 0 473 323 141 15 chr12 57096809 57097007 -87185482 - MIR SINE MIR -21 241 19 860 250 125 31 chr12 57097088 57097573 -87184916 + MER115 DNA AcHobo 118 690 -3 2263 94 0 0 chr12 57097839 57098137 -87184352 - AluSx SINE Alu -14 298 1 911 327 75 59 chr12 57098569 57099355 -87183134 + L2 LINE L2 2412 3197 -75 1337 223 106 17 chr12 57099357 57099508 -87182981 - L2 LINE L2 -1 3312 3176 1805 114 21 18 chr12 57099508 57099827 -87182662 + AluSq SINE Alu 11 313 0 1337 223 106 17 chr12 57099827 57100079 -87182410 - L2 LINE L2 -137 3176 2873 715 161 0 8 chr12 57100153 57100271 -87182218 - FRAM SINE Alu -2 174 58 569 286 28 22 chr12 57100271 57100449 -87182040 - L2 LINE L2 -605 2709 2531 237 277 92 0 chr12 57100448 57100513 -87181976 + L2 LINE L2 3242 3312 -1 * 550 178 15 84 chr12 57100621 57100826 -87181663 + L1M2 LINE L1 5256 5446 -799 536 154 16 95 chr12 57100960 57101155 -87181334 - L1MC/D LINE L1 -807 5435 5256 237 277 92 0 chr12 57101263 57101328 -87181161 - L2 LINE L2 -1 3312 3242 * 569 286 28 22 chr12 57101327 57101505 -87180984 + L2 LINE L2 2531 2709 -605 715 161 0 8 chr12 57101505 57101623 -87180866 + FRAM SINE Alu 58 174 -2 1337 223 106 17 chr12 57101697 57101949 -87180540 + L2 LINE L2 2873 3176 -137 1791 117 21 18 chr12 57101949 57102268 -87180221 - AluSq SINE Alu 0 313 11 1337 223 106 17 chr12 57102268 57102419 -87180070 + L2 LINE L2 3176 3312 -1 911 327 75 59 chr12 57102421 57103207 -87179282 - L2 LINE L2 -75 3197 2412 2263 94 0 0 chr12 57103639 57103937 -87178552 + AluSx SINE Alu 1 298 -14 860 250 125 31 chr12 57104202 57104687 -87177802 - MER115 DNA AcHobo -3 690 118 473 323 141 15 chr12 57104768 57104966 -87177523 + MIR SINE MIR 19 241 -21 29 0 0 0 chr12 57105409 57105438 -87177051 + AT_rich Low_complexity Low_complexity 1 29 0 2076 125 0 0 chr12 57105440 57105735 -87176754 - AluSx SINE Alu -17 295 1 1483 185 50 4 chr12 57105739 57106020 -87176469 - AluJb SINE Alu -18 294 1 2049 109 3 0 chr12 57106174 57106486 -87176003 - AluSx SINE Alu 0 313 1 991 82 15 0 chr12 57106486 57106620 -87175869 - AluSq/x SINE Alu -177 136 1 424 314 23 23 chr12 57107749 57107924 -87174565 + L2 LINE L2 2565 2739 -575 400 48 32 63 chr12 57108176 57108239 -87174250 + AluY SINE Alu 225 285 -25 342 0 0 0 chr12 57108263 57108301 -87174188 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1561 140 8 16 chr12 57108318 57108568 -87173921 - AluSx SINE Alu -64 248 1 398 145 16 0 chr12 57108593 57108655 -87173834 + AluS SINE Alu 1 63 -237 623 155 5 34 chr12 57108785 57108927 -87173562 - L1M LINE L1 -856 5290 5163 772 166 113 0 chr12 57108927 57109078 -87173411 - AluY SINE Alu -14 297 130 2438 228 29 10 chr12 57109282 57109910 -87172579 - L1M4 LINE L1 -1050 5096 4457 864 196 48 61 chr12 57109917 57110228 -87172261 - AluJo SINE Alu 0 312 6 240 196 0 0 chr12 57110234 57110290 -87172199 - L1M4 LINE L1 -1676 4470 4415 980 158 37 0 chr12 57110290 57110454 -87172035 - FRAM SINE Alu -12 164 1 234 330 34 0 chr12 57110612 57110700 -87171789 + MIR SINE MIR 2 92 -170 1863 133 10 0 chr12 57110723 57111025 -87171464 - AluSx SINE Alu -1 311 7 719 259 193 25 chr12 57111822 57112143 -87170346 + MLT1J2 LTR MaLR 51 425 -25 1138 133 0 6 chr12 57112329 57112502 -87169987 + AluSg/x SINE Alu 129 300 -12 1507 188 62 0 chr12 57112569 57112845 -87169644 - AluJb SINE Alu -19 293 1 2098 135 0 0 chr12 57112885 57113196 -87169293 + AluSq SINE Alu 1 311 -2 376 248 72 8 chr12 57113196 57113321 -87169168 + L1M4 LINE L1 4708 4840 -1306 810 151 0 0 chr12 57113322 57113441 -87169048 + FLAM_C SINE Alu 6 124 -19 207 0 0 0 chr12 57113451 57113474 -87169015 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3341 60 7 5 chr12 57113616 57114050 -87168439 + L1PA4 LINE L1 5710 6144 -11 1286 275 25 7 chr12 57114063 57114466 -87168023 - L1M4 LINE L1 -2404 3742 3333 2129 112 10 0 chr12 57115024 57115328 -87167161 - AluSx SINE Alu -5 307 1 780 142 0 0 chr12 57115341 57115454 -87167035 - FLAM_C SINE Alu -25 118 6 2228 105 3 0 chr12 57115837 57116142 -87166347 - AluSx SINE Alu -6 306 1 521 192 0 0 chr12 57116170 57116248 -87166241 + MER2 DNA MER2_type 268 345 0 332 333 160 14 chr12 57116255 57116468 -87166021 + L2 LINE L2 2406 2649 -665 1417 167 19 51 chr12 57116513 57116697 -87165792 - AluJo SINE Alu -11 301 130 2019 95 7 7 chr12 57116697 57116991 -87165498 + AluSg SINE Alu 1 294 -16 1417 167 19 51 chr12 57116991 57117117 -87165372 - AluJo SINE Alu -182 130 1 2118 111 0 3 chr12 57118013 57118310 -87164179 - AluSx SINE Alu -16 296 1 2067 116 0 0 chr12 57118337 57118639 -87163850 - AluY SINE Alu -9 302 1 21 0 0 0 chr12 57119884 57119905 -87162584 + AT_rich Low_complexity Low_complexity 1 21 0 342 0 0 0 chr12 57121837 57121875 -87160614 + (TG)n Simple_repeat Simple_repeat 2 39 0 2927 16 0 0 chr12 57122013 57122327 -87160162 + AluYb8 SINE Alu 1 314 -4 224 313 148 0 chr12 57123705 57123833 -87158656 + L3b LINE CR1 1303 1449 -134 341 341 121 6 chr12 57124079 57124252 -87158237 + MIR SINE MIR 10 202 -60 402 210 43 29 chr12 57124736 57124874 -87157615 - L1MC4 LINE L1 -1 8041 7902 882 217 40 59 chr12 57124909 57124939 -87157550 - L1MC4 LINE L1 -310 7732 7703 1909 139 0 10 chr12 57124939 57125227 -87157262 - AluJb SINE Alu -21 291 7 882 217 40 59 chr12 57125227 57125468 -87157021 - L1MC4 LINE L1 -339 7703 7466 395 278 46 0 chr12 57125500 57125608 -87156881 + L2 LINE L2 3201 3313 0 570 248 151 59 chr12 57126912 57127056 -87155433 + L2 LINE L2 2749 2878 -435 4137 162 4 28 chr12 57127056 57127738 -87154751 + L1MB3 LINE L1 5440 6137 -46 2232 106 0 3 chr12 57127738 57128031 -87154458 - AluSc SINE Alu -17 292 1 1846 152 20 7 chr12 57128039 57128336 -87154153 - AluJb SINE Alu -11 301 1 4137 162 4 28 chr12 57128336 57128404 -87154085 + L1MB3 LINE L1 6144 6181 -2 570 248 151 59 chr12 57128404 57128611 -87153878 + L2 LINE L2 2878 3065 -248 2582 57 0 3 chr12 57128611 57128910 -87153579 - AluY SINE Alu -13 298 1 570 248 151 59 chr12 57128910 57129068 -87153421 + L2 LINE L2 3065 3313 0 192 77 0 0 chr12 57129423 57129449 -87153040 + (T)n Simple_repeat Simple_repeat 1 26 0 195 188 0 0 chr12 57131039 57131087 -87151402 + (TTTG)n Simple_repeat Simple_repeat 3 50 0 887 248 45 76 chr12 57131273 57131923 -87150566 - L2 LINE L2 0 3313 2687 652 334 124 3 chr12 57131946 57132326 -87150163 - L1ME3A LINE L1 -223 5947 5522 486 328 51 0 chr12 57132333 57132510 -87149979 - MIR SINE MIR -70 192 7 699 295 91 8 chr12 57132738 57132979 -87149510 + MIR SINE MIR 2 262 0 2140 129 7 3 chr12 57133005 57133314 -87149175 - AluSx SINE Alu -2 310 1 529 263 46 7 chr12 57133587 57133739 -87148750 - MIR SINE MIR -16 246 89 1238 111 0 0 chr12 57133741 57133945 -87148544 + AluSg/x SINE Alu 128 331 0 376 299 19 0 chr12 57133948 57134055 -87148434 - MIR SINE MIR -152 110 2 291 338 26 46 chr12 57134657 57135073 -87147416 - L2 LINE L2 -109 3163 2695 231 315 153 9 chr12 57136604 57136715 -87145774 - L2 LINE L2 -8 3305 3179 590 311 11 0 chr12 57137217 57137397 -87145092 + MIR3 SINE MIR 18 199 -9 273 109 0 0 chr12 57137798 57137844 -87144645 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 2122 135 0 0 chr12 57137848 57138145 -87144344 + AluSx SINE Alu 1 297 -15 1026 126 0 135 chr12 57138244 57138385 -87144104 - MER5A DNA MER1_type 0 189 85 2276 110 0 3 chr12 57138385 57138695 -87143794 - AluSq SINE Alu -4 309 1 1026 126 0 135 chr12 57138695 57138768 -87143721 - MER5A DNA MER1_type -104 85 4 250 279 93 14 chr12 57138875 57139015 -87143474 + L2 LINE L2 3159 3309 -4 564 196 159 31 chr12 57140263 57140426 -87142063 + MER5A DNA MER1_type 4 187 -2 1560 124 6 158 chr12 57141693 57142048 -87140441 - AluJb SINE Alu 0 302 2 249 33 0 0 chr12 57142054 57142084 -87140405 + (TA)n Simple_repeat Simple_repeat 2 31 0 2088 115 0 36 chr12 57142086 57142390 -87140099 - AluSx SINE Alu -19 293 1 761 236 131 0 chr12 57142437 57142666 -87139823 - MIR SINE MIR -1 261 3 321 360 82 26 chr12 57144314 57144617 -87137872 + L2 LINE L2 2944 3263 -9 2440 63 0 28 chr12 57144619 57144936 -87137553 + AluY SINE Alu 1 308 -3 2122 89 11 7 chr12 57145030 57145333 -87137156 + AluSc SINE Alu 1 304 0 209 301 133 9 chr12 57148809 57148922 -87133567 - MIR SINE MIR -9 253 127 193 152 87 0 chr12 57152310 57152356 -87130133 - L2 LINE L2 -219 3053 3004 2607 129 54 10 chr12 57153562 57153972 -87128517 - MSTB1 LTR MaLR -4 428 1 223 216 260 44 chr12 57154039 57154131 -87128358 - MIR SINE MIR -13 249 178 2282 107 7 0 chr12 57154131 57154440 -87128049 + AluSx SINE Alu 1 311 -1 223 216 260 44 chr12 57154440 57154551 -87127938 - MIR SINE MIR -84 178 2 276 30 0 0 chr12 57154705 57154738 -87127751 + (CA)n Simple_repeat Simple_repeat 2 34 0 2167 86 22 0 chr12 57157554 57157832 -87124657 + AluSq SINE Alu 22 305 -8 215 214 0 0 chr12 57159038 57159080 -87123409 + CT-rich Low_complexity Low_complexity 1 42 0 292 315 41 34 chr12 57159083 57159229 -87123260 - L2 LINE L2 -5 3267 3121 1192 155 25 0 chr12 57161138 57161338 -87121151 - L1MB3 LINE L1 -2 6181 5977 504 258 168 0 chr12 57161861 57162016 -87120473 + MER5A DNA MER1_type 9 189 0 423 286 175 18 chr12 57164747 57164964 -87117525 + MIR SINE MIR 12 262 0 1202 92 9 9 chr12 57166142 57166622 -87115867 + (TTTC)n Simple_repeat Simple_repeat 1 659 0 1481 184 4 15 chr12 57166622 57166893 -87115596 - AluJo SINE Alu -32 280 13 32 0 0 0 chr12 57168704 57168736 -87113753 + AT_rich Low_complexity Low_complexity 1 32 0 2146 118 0 3 chr12 57168736 57169024 -87113465 - AluSx SINE Alu -25 287 1 1321 159 9 0 chr12 57169218 57169432 -87113057 - AluJb SINE Alu -10 302 87 885 144 7 14 chr12 57169433 57169572 -87112917 - AluJo SINE Alu -174 138 1 1899 155 0 4 chr12 57169823 57170125 -87112364 - AluJb SINE Alu 0 307 7 301 241 78 26 chr12 57170231 57170347 -87112142 + 7SK RNA RNA 4 125 -68 1278 135 5 19 chr12 57173988 57174203 -87108286 + AluSc SINE Alu 97 308 -1 219 249 211 38 chr12 57174438 57174651 -87107838 + L3b LINE CR1 1214 1463 -120 749 133 0 0 chr12 57175344 57175449 -87107040 - FRAM SINE Alu -13 163 59 433 179 0 19 chr12 57176243 57176349 -87106140 + CT-rich Low_complexity Low_complexity 1 104 0 1329 190 7 62 chr12 57176349 57176501 -87105988 - AluJo SINE Alu -24 288 160 2043 113 0 10 chr12 57176501 57176794 -87105695 - AluSx SINE Alu -22 290 1 1329 190 7 62 chr12 57176794 57176946 -87105543 - AluJo SINE Alu -152 160 1 213 292 193 12 chr12 57177072 57177233 -87105256 - L2 LINE L2 0 3313 3124 187 264 88 44 chr12 57177400 57177491 -87104998 - L2 LINE L2 0 3272 3178 418 258 203 0 chr12 57178070 57178198 -87104291 - MIR3 SINE MIR -21 187 34 2240 91 3 0 chr12 57178590 57178888 -87103601 - AluSp SINE Alu -14 299 1 308 176 0 0 chr12 57179798 57179849 -87102640 - L2 LINE L2 0 3313 3263 1978 108 11 0 chr12 57179907 57180225 -87102264 - AluSx SINE Alu 0 321 1 487 238 54 7 chr12 57180617 57180764 -87101725 + MER103 DNA DNA 11 164 -2 568 323 30 6 chr12 57180843 57181010 -87101479 + MIR3 SINE MIR 16 186 -22 679 180 0 55 chr12 57181846 57182046 -87100443 - L1PA16 LINE L1 -174 5992 5804 182 338 130 26 chr12 57183113 57183267 -87099222 + MIR3 SINE MIR 38 207 -1 2294 83 0 0 chr12 57183468 57183770 -87098719 - AluY SINE Alu -9 302 1 21 0 0 0 chr12 57185015 57185036 -87097453 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr12 57186969 57187004 -87095485 + (TG)n Simple_repeat Simple_repeat 1 35 0 2786 16 0 0 chr12 57187146 57187460 -87095029 + AluYb8 SINE Alu 1 314 -4 275 312 167 0 chr12 57188839 57188977 -87093512 + L3b LINE CR1 1303 1463 -120 405 341 121 6 chr12 57189213 57189386 -87093103 + MIR SINE MIR 10 202 -60 389 210 43 29 chr12 57189870 57190008 -87092481 - L1MC4 LINE L1 -1 8041 7902 870 217 40 59 chr12 57190043 57190073 -87092416 - L1MC4 LINE L1 -310 7732 7703 1791 139 0 10 chr12 57190073 57190361 -87092128 - AluJb SINE Alu -21 291 7 870 217 40 59 chr12 57190361 57190602 -87091887 - L1MC4 LINE L1 -339 7703 7466 441 295 9 0 chr12 57190634 57190746 -87091743 + L2 LINE L2 3201 3313 0 736 257 146 54 chr12 57192046 57192190 -87090299 + L2 LINE L2 2749 2878 -435 4100 162 4 28 chr12 57192190 57192872 -87089617 + L1MB3 LINE L1 5440 6137 -46 2106 106 0 3 chr12 57192872 57193165 -87089324 - AluSc SINE Alu -17 292 1 1761 152 20 3 chr12 57193173 57193469 -87089020 - AluJb SINE Alu -11 301 1 4100 162 4 28 chr12 57193469 57193537 -87088952 + L1MB3 LINE L1 6144 6181 -2 736 257 146 54 chr12 57193537 57193744 -87088745 + L2 LINE L2 2878 3065 -248 2446 57 0 3 chr12 57193744 57194043 -87088446 - AluY SINE Alu -13 298 1 736 257 146 54 chr12 57194043 57194201 -87088288 + L2 LINE L2 3065 3313 0 192 77 0 0 chr12 57194556 57194582 -87087907 + (T)n Simple_repeat Simple_repeat 1 26 0 195 188 0 0 chr12 57196172 57196220 -87086269 + (TTTG)n Simple_repeat Simple_repeat 3 50 0 988 248 45 76 chr12 57196406 57197056 -87085433 - L2 LINE L2 0 3313 2687 653 306 142 17 chr12 57197099 57197458 -87085031 - L1ME2 LINE L1 -238 5926 5523 549 324 49 0 chr12 57197458 57197643 -87084846 - MIR SINE MIR -62 200 7 691 295 91 8 chr12 57197871 57198112 -87084377 + MIR SINE MIR 2 262 0 2019 129 7 3 chr12 57198138 57198447 -87084042 - AluSx SINE Alu -2 310 1 591 263 46 7 chr12 57198720 57198872 -87083617 - MIR SINE MIR -16 246 89 1167 111 0 0 chr12 57198874 57199078 -87083411 + AluSg/x SINE Alu 130 333 0 416 299 19 0 chr12 57199081 57199188 -87083301 - MIR SINE MIR -152 110 2 349 331 58 44 chr12 57199790 57200229 -87082260 - L2 LINE L2 -109 3163 2664 232 298 99 116 chr12 57201734 57202218 -87080271 - L2 LINE L2 -8 3305 2830 655 314 11 0 chr12 57202342 57202527 -87079962 + MIR3 SINE MIR 13 199 -9 273 109 0 0 chr12 57202928 57202974 -87079515 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1997 135 0 0 chr12 57202978 57203275 -87079214 + AluSx SINE Alu 1 297 -15 612 182 0 18 chr12 57203374 57203484 -87079005 - MER5A DNA MER1_type 0 189 82 2103 119 0 3 chr12 57203515 57203825 -87078664 - AluSq SINE Alu -4 309 1 800 197 0 0 chr12 57203844 57203976 -87078513 - FLAM_C SINE Alu -10 133 2 213 292 193 12 chr12 57204103 57204264 -87078225 - L2 LINE L2 0 3313 3124 187 264 88 44 chr12 57204431 57204522 -87077967 - L2 LINE L2 0 3272 3178 418 258 203 0 chr12 57205101 57205229 -87077260 - MIR3 SINE MIR -21 187 34 2240 91 3 0 chr12 57205621 57205919 -87076570 - AluSp SINE Alu -14 299 1 308 176 0 0 chr12 57206829 57206880 -87075609 - L2 LINE L2 0 3313 3263 1978 108 11 0 chr12 57206938 57207256 -87075233 - AluSx SINE Alu 0 321 1 487 238 54 7 chr12 57207648 57207795 -87074694 + MER103 DNA DNA 11 164 -2 568 323 30 6 chr12 57207874 57208041 -87074448 + MIR3 SINE MIR 16 186 -22 312 27 0 0 chr12 57208768 57208805 -87073684 + (TG)n Simple_repeat Simple_repeat 2 38 0 965 223 32 14 chr12 57208985 57209263 -87073226 + AluSx SINE Alu 11 293 -19 763 219 13 7 chr12 57209279 57209430 -87073059 + FRAM SINE Alu 13 164 -12 367 181 0 21 chr12 57209430 57209524 -87072965 + GA-rich Low_complexity Low_complexity 1 92 0 749 133 0 0 chr12 57210318 57210423 -87072066 + FRAM SINE Alu 59 163 -13 219 249 211 38 chr12 57211116 57211329 -87071160 - L3b LINE CR1 -120 1463 1214 1278 135 5 19 chr12 57211564 57211779 -87070710 - AluSc SINE Alu -1 308 97 313 244 96 35 chr12 57215420 57215535 -87066954 - 7SK RNA RNA -68 125 4 1783 155 0 4 chr12 57215641 57215943 -87066546 + AluJb SINE Alu 7 307 0 186 346 105 33 chr12 57215949 57216102 -87066387 - L3b LINE CR1 -201 1382 1219 828 144 7 14 chr12 57216194 57216333 -87066156 + AluJo SINE Alu 1 138 -174 1245 159 9 0 chr12 57216334 57216548 -87065941 + AluJb SINE Alu 87 302 -10 2117 111 0 3 chr12 57216743 57217040 -87065449 + AluSx SINE Alu 1 296 -16 1788 151 3 43 chr12 57217936 57218261 -87064228 + AluJo SINE Alu 1 312 0 26 50 0 0 chr12 57218896 57218936 -87063553 + AT_rich Low_complexity Low_complexity 1 40 0 225 316 127 0 chr12 57219135 57219214 -87063275 - L2 LINE L2 -1 3271 3183 304 295 0 51 chr12 57219870 57220026 -87062463 + C-rich Low_complexity Low_complexity 1 148 0 286 278 28 33 chr12 57219972 57220152 -87062337 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 * 213 138 53 75 chr12 57220107 57220201 -87062288 + (CCCTG)n Simple_repeat Simple_repeat 4 95 0 * 225 155 0 0 chr12 57220465 57220523 -87061966 + G-rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr12 57220523 57220545 -87061944 + GC_rich Low_complexity Low_complexity 1 22 0 306 206 19 32 chr12 57220545 57220742 -87061747 + G-rich Low_complexity Low_complexity 1 194 0 52 30 0 0 chr12 57220748 57220814 -87061675 + GC_rich Low_complexity Low_complexity 1 66 0 331 160 15 76 chr12 57220830 57220961 -87061528 + (CGGGG)n Simple_repeat Simple_repeat 4 126 0 22 0 0 0 chr12 57221008 57221030 -87061459 + AT_rich Low_complexity Low_complexity 1 22 0 235 130 0 0 chr12 57221030 57221076 -87061413 + LTR66 LTR ERVL 394 439 -171 2063 107 0 14 chr12 57221100 57221389 -87061100 - AluSg SINE Alu -25 285 1 2026 125 0 3 chr12 57221453 57221756 -87060733 - AluSx SINE Alu -10 302 1 339 309 79 40 chr12 57224361 57224487 -87058002 - L2 LINE L2 -1 3271 3141 28 29 0 0 chr12 57224728 57224763 -87057726 + AT_rich Low_complexity Low_complexity 1 35 0 297 254 15 0 chr12 57224774 57224841 -87057648 - MIR SINE MIR -34 228 161 299 203 31 0 chr12 57224846 57224910 -87057579 + MIR SINE MIR 173 238 -24 363 311 68 8 chr12 57224926 57225058 -87057431 - MIR SINE MIR -110 152 13 243 273 0 0 chr12 57225155 57225210 -87057279 - L2 LINE L2 -564 2750 2696 314 260 52 0 chr12 57225557 57225653 -87056836 + L2 LINE L2 3170 3270 -2 2426 82 0 0 chr12 57225735 57226029 -87056460 + AluSc SINE Alu 1 294 -15 849 240 42 0 chr12 57226150 57226342 -87056147 - MIR SINE MIR 0 262 63 364 302 10 10 chr12 57226413 57226509 -87055980 - MER5A DNA MER1_type -83 106 11 226 191 0 0 chr12 57227405 57227447 -87055042 + L3 LINE CR1 1535 1576 -1 1656 186 0 0 chr12 57227871 57228135 -87054354 + MLT1C LTR MaLR 202 465 -2 198 244 81 105 chr12 57228345 57228386 -87054103 + MIR SINE MIR 19 59 -149 883 182 111 25 chr12 57228386 57228584 -87053905 + MER58C DNA MER1_type 1 215 0 198 244 81 105 chr12 57228584 57228628 -87053861 + MIR SINE MIR 59 102 -106 440 319 229 0 chr12 57228734 57229101 -87053388 - L2 LINE L2 -1004 2310 1860 1224 153 0 0 chr12 57229498 57229687 -87052802 - AluSg/x SINE Alu -3 309 121 460 97 87 58 chr12 57229829 57229932 -87052557 + MER53 DNA DNA 3 108 -81 1595 167 62 3 chr12 57230228 57230516 -87051973 - AluJb SINE Alu -7 305 1 232 202 223 21 chr12 57232005 57232099 -87050390 + L2 LINE L2 3148 3260 -12 274 268 0 0 chr12 57232195 57232277 -87050212 - MIR SINE MIR -1 261 180 1699 258 31 78 chr12 57232293 57233025 -87049464 - L1ME3A LINE L1 -15 6155 5458 528 238 24 48 chr12 57233041 57233167 -87049322 - MIR SINE MIR -106 156 34 23 0 0 0 chr12 57233271 57233294 -87049195 + AT_rich Low_complexity Low_complexity 1 23 0 182 362 138 0 chr12 57233802 57233896 -87048593 - MIR SINE MIR -59 149 43 286 341 57 0 chr12 57234041 57234164 -87048325 + L2 LINE L2 3140 3269 -3 310 50 0 0 chr12 57235076 57235116 -87047373 + AluSq/x SINE Alu 81 120 -182 1747 170 7 7 chr12 57236008 57236320 -87046169 + AluJo SINE Alu 1 312 0 199 306 32 0 chr12 57236329 57236391 -87046098 - L3b LINE CR1 -89 1494 1431 29 0 0 0 chr12 57237028 57237057 -87045432 + AT_rich Low_complexity Low_complexity 1 29 0 2317 103 0 7 chr12 57237067 57237368 -87045121 + AluSx SINE Alu 1 299 -13 297 100 0 0 chr12 57237902 57237952 -87044537 + (TG)n Simple_repeat Simple_repeat 2 51 0 279 79 0 0 chr12 57239348 57239386 -87043103 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 250 0 0 chr12 57240186 57240254 -87042235 + (CCCTAA)n Simple_repeat Simple_repeat 3 70 0 543 234 141 5 chr12 57241762 57241946 -87040543 - MIR SINE MIR 0 262 54 180 0 0 0 chr12 57242346 57242366 -87040123 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2463 106 18 3 chr12 57242376 57242715 -87039774 - L1PA16 LINE L1 -9 6157 5814 180 0 0 0 chr12 57242994 57243014 -87039475 + (TC)n Simple_repeat Simple_repeat 2 21 0 599 291 80 0 chr12 57243059 57243234 -87039255 - MIR SINE MIR -15 247 59 181 376 55 0 chr12 57243475 57243584 -87038905 - L2 LINE L2 -18 3254 3140 510 230 65 83 chr12 57244467 57244684 -87037805 + MIR SINE MIR 20 232 -30 23 0 0 0 chr12 57245066 57245089 -87037400 + AT_rich Low_complexity Low_complexity 1 23 0 2616 7 0 0 chr12 57246521 57246801 -87035688 + AluYb8 SINE Alu 27 306 -12 309 151 0 0 chr12 57247170 57247223 -87035266 + (TG)n Simple_repeat Simple_repeat 1 53 0 749 267 0 11 chr12 57247478 57247658 -87034831 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr12 57248374 57248396 -87034093 + AT_rich Low_complexity Low_complexity 1 22 0 2345 57 0 0 chr12 57248523 57248835 -87033654 - AluY SINE Alu 0 313 2 273 119 0 0 chr12 57249301 57249343 -87033146 + (CA)n Simple_repeat Simple_repeat 2 43 0 434 264 104 37 chr12 57250332 57250495 -87031994 - L2 LINE L2 0 3313 3140 233 261 57 34 chr12 57250726 57250814 -87031675 + MIR SINE MIR 16 105 -103 453 270 104 12 chr12 57251557 57251720 -87030769 + L2 LINE L2 3118 3295 -18 1659 167 3 14 chr12 57251721 57252003 -87030486 - AluJo SINE Alu -11 301 23 4792 165 50 20 chr12 57252324 57253273 -87029216 + L1MB8 LINE L1 4337 5359 -819 2239 76 35 0 chr12 57253273 57253561 -87028928 + AluY SINE Alu 1 298 -13 4792 165 50 20 chr12 57253561 57254175 -87028314 + L1MB8 LINE L1 5359 5953 -225 489 168 42 21 chr12 57254247 57254342 -87028147 + L1MB8 LINE L1 5939 6035 -143 232 204 0 0 chr12 57254343 57254392 -87028097 + LTR66 LTR ERVL 390 438 -172 315 306 0 0 chr12 57254393 57254478 -87028011 + L1MC4 LINE L1 6618 6702 -1340 2173 107 0 14 chr12 57254491 57254780 -87027709 - AluSg SINE Alu -25 285 1 2130 125 0 3 chr12 57254844 57255147 -87027342 - AluSx SINE Alu -10 302 1 312 27 0 0 chr12 57256237 57256255 -87026234 + (TG)n Simple_repeat Simple_repeat 1 55 0 312 27 0 0 chr12 57256255 57256292 -87026197 + (TG)n Simple_repeat Simple_repeat 2 38 0 229 171 0 0 chr12 57256665 57256706 -87025783 - L2 LINE L2 -8 3305 3265 2242 107 0 3 chr12 57256834 57257132 -87025357 - AluSg SINE Alu -13 297 1 1853 163 10 0 chr12 57259290 57259584 -87022905 - AluJb SINE Alu -15 297 1 349 375 74 68 chr12 57260633 57260956 -87021533 + L2 LINE L2 2871 3195 -77 209 269 58 0 chr12 57261047 57261099 -87021390 + L2 LINE L2 3242 3296 -17 1056 187 37 23 chr12 57261130 57261344 -87021145 - L1PA16 LINE L1 0 6166 5950 183 310 0 0 chr12 57261928 57261986 -87020503 - L2 LINE L2 -1 3271 3214 203 348 33 11 chr12 57263511 57263603 -87018886 + L3b LINE CR1 1411 1504 -79 378 280 150 0 chr12 57264156 57264256 -87018233 + L2 LINE L2 3140 3254 -18 1823 163 17 0 chr12 57264874 57265168 -87017321 + AluJb SINE Alu 1 299 -13 201 147 0 0 chr12 57265189 57265223 -87017266 + (A)n Simple_repeat Simple_repeat 1 34 0 183 293 69 17 chr12 57265256 57265314 -87017175 - L3b LINE CR1 -92 1491 1431 2248 106 0 0 chr12 57265840 57266141 -87016348 - L1PA16 LINE L1 -62 6104 5804 2534 57 0 0 chr12 57267562 57267860 -87014629 - AluY SINE Alu -13 298 1 2185 128 0 0 chr12 57267911 57268208 -87014281 + AluSx SINE Alu 1 297 -15 402 21 0 0 chr12 57268545 57268592 -87013897 + (TG)n Simple_repeat Simple_repeat 1 47 0 663 308 97 65 chr12 57269105 57269488 -87013001 + L1MEd LINE L1 2 416 -5703 1557 169 134 0 chr12 57269488 57269749 -87012740 + AluJo SINE Alu 1 296 -6 663 308 97 65 chr12 57269749 57270014 -87012475 + L1MEd LINE L1 416 671 -5448 547 278 73 46 chr12 57270149 57270572 -87011917 + L1MEd LINE L1 895 1364 -4862 282 73 0 0 chr12 57270687 57270728 -87011761 + (TA)n Simple_repeat Simple_repeat 1 41 0 4103 241 90 51 chr12 57270730 57271216 -87011273 + L1ME1 LINE L1 1070 1536 -4679 5514 25 3 2 chr12 57271216 57271823 -87010666 - L1PA4 LINE L1 -3 6152 5545 4103 241 90 51 chr12 57271823 57272103 -87010386 + L1ME1 LINE L1 1536 1804 -4411 1630 139 0 20 chr12 57272103 57272393 -87010096 + AluJb SINE Alu 48 312 0 4103 241 90 51 chr12 57272393 57273895 -87008594 + L1ME1 LINE L1 1804 3247 -2968 330 58 19 0 chr12 57273895 57273947 -87008542 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 2027 130 3 3 chr12 57273947 57274232 -87008257 - AluSx SINE Alu -27 285 1 4103 241 90 51 chr12 57274232 57274664 -87007825 + L1ME1 LINE L1 3247 3661 -2554 10372 38 1 0 chr12 57274664 57276682 -87005807 - L1PA5 LINE L1 -11 6143 4123 4103 241 90 51 chr12 57276682 57277348 -87005141 + L1ME1 LINE L1 3661 4539 -1676 954 193 17 21 chr12 57277375 57277614 -87004875 - L1MB3 LINE L1 -2 6181 5944 2568 201 53 75 chr12 57277618 57277957 -87004532 + L1ME1 LINE L1 4921 5266 -969 429 20 0 0 chr12 57277957 57278007 -87004482 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 289 138 121 0 chr12 57278007 57278065 -87004424 - AluYb8 SINE Alu -110 198 134 2568 201 53 75 chr12 57278065 57278682 -87003807 + L1ME1 LINE L1 5264 5909 -326 204 105 123 0 chr12 57278780 57278837 -87003652 + (AATAG)n Simple_repeat Simple_repeat 4 67 0 448 297 161 0 chr12 57278853 57279008 -87003481 + MER5A DNA MER1_type 10 189 0 1696 101 13 4 chr12 57279505 57279733 -87002756 - AluSx SINE Alu -69 243 14 296 326 94 9 chr12 57279755 57280086 -87002403 - HAL1 LINE L1 -938 1569 1211 544 323 55 5 chr12 57281552 57281753 -87000736 + MIR SINE MIR 52 262 0 380 310 203 5 chr12 57283004 57283191 -86999298 + L2 LINE L2 2325 2548 -766 1254 54 12 0 chr12 57283425 57283631 -86998858 + L1PA8 LINE L1 5981 6188 0 418 274 0 35 chr12 57285207 57285320 -86997169 - L2 LINE L2 -16 3297 3189 200 208 19 38 chr12 57285552 57285605 -86996884 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 1086 99 9 35 chr12 57285696 57286148 -86996341 + (TTTC)n Simple_repeat Simple_repeat 1 620 0 1766 138 4 11 chr12 57286148 57286424 -86996065 - AluJo SINE Alu -38 274 1 204 277 85 32 chr12 57286577 57286671 -86995818 - MIR SINE MIR -46 216 118 366 80 0 0 chr12 57286735 57286785 -86995704 + (CA)n Simple_repeat Simple_repeat 1 50 0 325 314 46 26 chr12 57286995 57287148 -86995341 - L3b LINE CR1 -186 1397 1242 1163 107 0 0 chr12 57287876 57288053 -86994436 - L1MA6 LINE L1 0 6300 6124 243 0 0 0 chr12 57288991 57289018 -86993471 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 279 228 0 0 chr12 57289258 57289315 -86993174 - L2 LINE L2 0 3313 3257 275 280 183 0 chr12 57289930 57290023 -86992466 + L2 LINE L2 3156 3265 -7 2358 95 0 7 chr12 57290580 57290885 -86991604 + AluSg SINE Alu 1 303 -7 363 300 137 39 chr12 57291159 57291392 -86991097 + MIR SINE MIR 2 257 -5 865 267 31 4 chr12 57294228 57294453 -86988036 + MIR SINE MIR 15 245 -17 4324 66 11 0 chr12 57294727 57295291 -86987198 - L1PA5 LINE L1 -3 6151 5582 495 296 60 20 chr12 57295410 57295609 -86986880 - MIR SINE MIR -53 209 3 1744 169 51 0 chr12 57295824 57296119 -86986370 + AluJo SINE Alu 1 310 -2 273 171 0 37 chr12 57296121 57296203 -86986286 + GA-rich Low_complexity Low_complexity 3 81 0 881 133 6 17 chr12 57296203 57296383 -86986106 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 1709 143 86 7 chr12 57296439 57296718 -86985771 + AluJo SINE Alu 3 303 -9 494 251 98 25 chr12 57296728 57296956 -86985533 + L1ME1 LINE L1 5885 6132 -30 363 306 65 0 chr12 57297067 57297175 -86985314 + L2 LINE L2 3142 3256 -16 482 318 125 67 chr12 57297861 57298749 -86983740 + L2 LINE L2 2347 3270 -2 389 267 0 40 chr12 57299221 57299322 -86983167 + L2 LINE L2 3216 3312 -1 24 32 0 0 chr12 57299353 57299384 -86983105 + AT_rich Low_complexity Low_complexity 1 31 0 291 313 28 11 chr12 57299632 57299906 -86982583 - L1MC4a LINE L1 -284 5886 5636 741 204 0 0 chr12 57299915 57300062 -86982427 + L1MB2 LINE L1 4020 4166 -1980 * 2276 189 20 0 chr12 57300049 57300654 -86981835 + L1MB2 LINE L1 4824 5443 -725 3175 164 50 47 chr12 57300814 57300981 -86981508 + L1MB2 LINE L1 5446 5611 -560 2281 116 0 10 chr12 57300981 57301292 -86981197 + AluSq SINE Alu 6 313 0 1906 91 3 68 chr12 57301300 57301596 -86980893 + AluY SINE Alu 34 310 -1 3175 164 50 47 chr12 57301596 57302143 -86980346 + L1MB2 LINE L1 5617 6171 0 718 273 31 47 chr12 57302145 57302745 -86979744 - L1MC4a LINE L1 -530 5632 5036 1982 126 0 3 chr12 57303089 57303375 -86979114 + AluSx SINE Alu 23 307 -5 201 141 16 62 chr12 57305052 57305116 -86977373 + T-rich Low_complexity Low_complexity 4 64 0 250 143 18 36 chr12 57305124 57305180 -86977309 + MER116 DNA Mariner 1 55 -25 1791 164 3 3 chr12 57305193 57305491 -86976998 - AluJb SINE Alu -9 303 6 868 208 68 10 chr12 57305585 57305777 -86976712 + MIR SINE MIR 60 262 0 421 339 4 9 chr12 57306061 57306291 -86976198 - L1ME3A LINE L1 -230 5923 5695 895 210 69 123 chr12 57306294 57306574 -86975915 - L2 LINE L2 -1 3312 3057 2211 101 22 35 chr12 57306574 57306891 -86975598 + AluSq SINE Alu 1 313 0 895 210 69 123 chr12 57306891 57307001 -86975488 - L2 LINE L2 -256 3057 2943 505 255 38 84 chr12 57307072 57307315 -86975174 - L1ME3A LINE L1 -504 5641 5388 2034 85 4 11 chr12 57307315 57307585 -86974904 - AluSp SINE Alu 0 313 46 505 255 38 84 chr12 57307585 57307704 -86974785 - L1ME3A LINE L1 -757 5388 5265 2011 135 21 0 chr12 57307704 57307993 -86974496 - AluJb SINE Alu -17 295 1 505 255 38 84 chr12 57307993 57308264 -86974225 - L1ME3A LINE L1 -880 5265 5041 1263 256 133 21 chr12 57308285 57308953 -86973536 - L2 LINE L2 -2 3311 2542 1488 123 6 71 chr12 57308965 57309290 -86973199 + L1 LINE L1 5098 5401 -745 493 262 35 68 chr12 57309290 57309458 -86973031 - L2 LINE L2 -780 2534 2312 833 141 0 15 chr12 57309458 57309593 -86972896 - FLAM_C SINE Alu 0 133 1 493 262 35 68 chr12 57309593 57309684 -86972805 - L2 LINE L2 -1002 2312 2220 216 0 0 0 chr12 57309735 57309759 -86972730 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 2239 125 6 0 chr12 57309759 57310070 -86972419 - AluSq SINE Alu 0 313 1 255 231 0 26 chr12 57310071 57310149 -86972340 - L1ME3A LINE L1 -1119 5010 4935 321 333 88 0 chr12 57310273 57310387 -86972102 - L2 LINE L2 -614 2700 2577 333 206 69 49 chr12 57310424 57310526 -86971963 - LTR33A LTR ERVL -4 519 416 2210 99 7 10 chr12 57310735 57311038 -86971451 + AluSx SINE Alu 1 302 -10 906 269 84 17 chr12 57311040 57311386 -86971103 - ERVL LTR ERVL -1362 4402 4034 864 257 104 59 chr12 57311395 57311621 -86970868 - L1MEd LINE L1 -2941 3188 2974 1276 158 22 5 chr12 57311621 57311843 -86970646 - L1MC1 LINE L1 0 6333 6108 864 257 104 59 chr12 57311843 57312289 -86970200 - L1MEd LINE L1 -3155 2974 2549 2408 70 3 13 chr12 57312289 57312589 -86969900 - AluSp SINE Alu -16 297 1 864 257 104 59 chr12 57312589 57312723 -86969766 - L1MEd LINE L1 -3580 2549 2422 1019 157 19 14 chr12 57312723 57312939 -86969550 - L1MB4 LINE L1 0 6180 5964 864 257 104 59 chr12 57312939 57312954 -86969535 - L1MEd LINE L1 -3707 2422 2409 678 159 15 61 chr12 57312954 57313086 -86969403 - FLAM_C SINE Alu -7 126 1 864 257 104 59 chr12 57313086 57313316 -86969173 - L1MEd LINE L1 -3720 2409 2114 22 0 0 0 chr12 57313447 57313469 -86969020 + AT_rich Low_complexity Low_complexity 1 22 0 582 284 76 32 chr12 57313769 57314354 -86968135 - L1MEd LINE L1 -861 1629 955 1628 156 0 7 chr12 57314360 57314629 -86967860 - AluSx SINE Alu -3 309 43 289 286 115 44 chr12 57314660 57314842 -86967647 - L1ME3A LINE L1 -14 6156 5962 1997 160 0 19 chr12 57314922 57315240 -86967249 - AluJb SINE Alu 0 312 1 988 282 30 38 chr12 57315244 57315491 -86966998 - L1ME3A LINE L1 -232 5938 5691 1942 154 91 11 chr12 57315491 57315855 -86966634 - MSTD LTR MaLR -3 393 1 988 282 30 38 chr12 57315855 57316110 -86966379 - L1ME3A LINE L1 -479 5691 5440 243 145 65 32 chr12 57316529 57316591 -86965898 + LTR33A LTR ERVL 460 523 0 347 248 58 0 chr12 57316600 57316737 -86965752 - HsTC2 DNA Tc2 -5 1893 1749 279 0 0 0 chr12 57316737 57316768 -86965721 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 735 234 0 0 chr12 57316777 57316914 -86965575 - FRAM SINE Alu -39 137 1 28 0 0 0 chr12 57316947 57316975 -86965514 + AT_rich Low_complexity Low_complexity 1 28 0 691 264 79 58 chr12 57317027 57317304 -86965185 - L1MEd LINE L1 -5835 284 2 435 338 7 7 chr12 57317314 57317459 -86965030 - MIR SINE MIR -101 161 17 1288 93 0 36 chr12 57318295 57318488 -86964001 + L1PA8 LINE L1 5983 6168 -4 420 20 0 0 chr12 57319114 57319163 -86963326 + (TG)n Simple_repeat Simple_repeat 2 50 0 204 323 128 15 chr12 57319182 57319315 -86963174 - MIR3 SINE MIR -25 183 36 185 356 52 31 chr12 57321043 57321234 -86961255 - L3b LINE CR1 -95 1488 1294 543 244 131 55 chr12 57322819 57323163 -86959326 - MLT1J2 LTR MaLR -33 417 48 246 95 0 0 chr12 57324840 57324882 -86957607 + (A)n Simple_repeat Simple_repeat 1 42 0 216 0 0 0 chr12 57325815 57325839 -86956650 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 200 222 0 0 chr12 57326146 57326182 -86956307 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr12 57328333 57328355 -86954134 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 57332641 57332662 -86949827 + GC_rich Low_complexity Low_complexity 1 21 0 242 242 21 53 chr12 57335566 57335661 -86946828 + GA-rich Low_complexity Low_complexity 3 94 0 197 125 0 21 chr12 57335789 57335837 -86946652 + (CGG)n Simple_repeat Simple_repeat 3 49 0 22 88 0 0 chr12 57336476 57336533 -86945956 + GC_rich Low_complexity Low_complexity 1 57 0 288 0 0 0 chr12 57338381 57338413 -86944076 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 333 0 0 0 chr12 57338971 57339008 -86943481 + (T)n Simple_repeat Simple_repeat 1 37 0 289 316 0 0 chr12 57339008 57339103 -86943386 + GA-rich Low_complexity Low_complexity 1 95 0 317 246 192 15 chr12 57339939 57340069 -86942420 + MIR SINE MIR 36 188 -74 186 103 0 0 chr12 57340069 57340098 -86942391 + (CAA)n Simple_repeat Simple_repeat 2 30 0 858 138 119 46 chr12 57341435 57341653 -86940836 - MER96B DNA MER1_type? -183 234 1 26 0 0 0 chr12 57344193 57344219 -86938270 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr12 57344302 57344330 -86938159 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr12 57344374 57344413 -86938076 + (CA)n Simple_repeat Simple_repeat 1 39 0 213 218 0 0 chr12 57344943 57344959 -86937530 + GA-rich Low_complexity Low_complexity 1 16 -39 1738 132 48 42 chr12 57344959 57345269 -86937220 + AluSx SINE Alu 1 312 0 213 218 0 0 chr12 57345269 57345307 -86937182 + GA-rich Low_complexity Low_complexity 15 55 0 242 54 0 27 chr12 57352169 57352206 -86930283 + (CGG)n Simple_repeat Simple_repeat 3 38 0 24 32 0 0 chr12 57355736 57355767 -86926722 + AT_rich Low_complexity Low_complexity 1 31 0 194 271 7 19 chr12 57362510 57362665 -86919824 + GA-rich Low_complexity Low_complexity 2 154 0 232 207 0 52 chr12 57363022 57363080 -86919409 + CT-rich Low_complexity Low_complexity 1 55 0 188 119 0 48 chr12 57370774 57370816 -86911673 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 314 286 31 0 chr12 57371116 57371214 -86911275 + G-rich Low_complexity Low_complexity 1 101 0 34 0 0 0 chr12 57372267 57372301 -86910188 + AT_rich Low_complexity Low_complexity 1 34 0 186 43 0 0 chr12 57376449 57376472 -86906017 + (TC)n Simple_repeat Simple_repeat 1 23 0 414 0 0 0 chr12 57376472 57376518 -86905971 + (CA)n Simple_repeat Simple_repeat 1 46 0 417 297 53 76 chr12 57377262 57377573 -86904916 + L1M4 LINE L1 982 3347 -1187 23 0 0 0 chr12 57378328 57378351 -86904138 + AT_rich Low_complexity Low_complexity 1 23 0 215 283 0 0 chr12 57381581 57381634 -86900855 + CT-rich Low_complexity Low_complexity 2 54 0 216 0 0 0 chr12 57381682 57381706 -86900783 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 218 173 19 39 chr12 57381954 57382006 -86900483 + C-rich Low_complexity Low_complexity 2 52 0 213 213 0 21 chr12 57386271 57386318 -86896171 + C-rich Low_complexity Low_complexity 4 49 0 21 0 0 0 chr12 57391347 57391368 -86891121 + GC_rich Low_complexity Low_complexity 1 21 0 290 109 36 0 chr12 57391601 57391656 -86890833 + GA-rich Low_complexity Low_complexity 3 59 0 226 238 12 50 chr12 57392764 57392844 -86889645 + GA-rich Low_complexity Low_complexity 4 80 0 264 261 0 0 chr12 57396291 57396356 -86886133 + CT-rich Low_complexity Low_complexity 3 67 0 237 33 0 0 chr12 57398246 57398276 -86884213 + (CA)n Simple_repeat Simple_repeat 2 31 0 202 277 0 0 chr12 57398837 57398884 -86883605 + G-rich Low_complexity Low_complexity 2 48 0 251 154 0 19 chr12 57400736 57400788 -86881701 + GA-rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr12 57403037 57403065 -86879424 + GC_rich Low_complexity Low_complexity 1 28 0 180 152 0 0 chr12 57405571 57405604 -86876885 + C-rich Low_complexity Low_complexity 2 34 0 522 0 0 0 chr12 57405643 57405701 -86876788 + (TC)n Simple_repeat Simple_repeat 1 58 0 294 0 0 61 chr12 57405841 57405890 -86876599 + (CCG)n Simple_repeat Simple_repeat 2 47 0 201 71 143 0 chr12 57405946 57405988 -86876501 + (CAGCC)n Simple_repeat Simple_repeat 4 51 0 219 242 0 0 chr12 57408123 57408185 -86874304 + GA-rich Low_complexity Low_complexity 2 63 0 283 230 0 27 chr12 57408671 57408745 -86873744 + A-rich Low_complexity Low_complexity 2 73 0 243 0 0 0 chr12 57408748 57408775 -86873714 + (CCCCCT)n Simple_repeat Simple_repeat 3 29 0 342 259 24 102 chr12 57409017 57409183 -86873306 + L1 LINE L1 3015 3167 -2979 25 51 0 0 chr12 57409425 57409464 -86873025 + AT_rich Low_complexity Low_complexity 1 39 0 586 34 8 60 chr12 57410751 57410868 -86871621 + (TTCTC)n Simple_repeat Simple_repeat 5 115 0 198 0 0 0 chr12 57413172 57413194 -86869295 + (A)n Simple_repeat Simple_repeat 1 22 0 182 37 37 0 chr12 57413452 57413479 -86869010 + (TGGGGG)n Simple_repeat Simple_repeat 4 31 0 23 54 0 0 chr12 57413777 57413814 -86868675 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr12 57414074 57414108 -86868381 + AT_rich Low_complexity Low_complexity 1 34 0 252 149 0 0 chr12 57414169 57414216 -86868273 + (GA)n Simple_repeat Simple_repeat 1 47 0 22 35 0 0 chr12 57420825 57420854 -86861635 + AT_rich Low_complexity Low_complexity 1 29 0 183 184 0 0 chr12 57424370 57424408 -86858081 + CT-rich Low_complexity Low_complexity 1 38 0 204 40 0 0 chr12 57425060 57425085 -86857404 + (TA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr12 57426214 57426239 -86856250 + GC_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr12 57427534 57427554 -86854935 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 243 263 18 0 chr12 57429611 57429668 -86852821 + CT-rich Low_complexity Low_complexity 2 59 0 186 286 20 0 chr12 57433338 57433387 -86849102 + L2 LINE L2 3214 3263 -9 192 77 0 0 chr12 57434397 57434423 -86848066 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 195 42 0 0 chr12 57437866 57437890 -86844599 + (TAA)n Simple_repeat Simple_repeat 3 26 0 1781 149 51 0 chr12 57438503 57438779 -86843710 - AluSq SINE Alu -23 290 1 2269 109 3 0 chr12 57438782 57439094 -86843395 - AluSp SINE Alu 0 313 1 441 0 0 0 chr12 57440735 57440784 -86841705 + (TG)n Simple_repeat Simple_repeat 2 50 0 213 213 0 21 chr12 57442049 57442096 -86840393 + G-rich Low_complexity Low_complexity 4 49 0 218 173 19 39 chr12 57446361 57446413 -86836076 + G-rich Low_complexity Low_complexity 2 52 0 216 0 0 0 chr12 57446661 57446685 -86835804 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 215 283 0 0 chr12 57446733 57446786 -86835703 + GA-rich Low_complexity Low_complexity 2 54 0 183 184 0 0 chr12 57449164 57449202 -86833287 + CT-rich Low_complexity Low_complexity 1 38 0 204 40 0 0 chr12 57449854 57449879 -86832610 + (TA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr12 57451008 57451033 -86831456 + GC_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr12 57452328 57452348 -86830141 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 276 53 0 0 chr12 57453964 57454002 -86828487 + (TG)n Simple_repeat Simple_repeat 2 39 0 504 32 0 0 chr12 57458995 57459057 -86823432 + (CA)n Simple_repeat Simple_repeat 2 63 0 21 0 0 0 chr12 57459649 57459670 -86822819 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr12 57460121 57460147 -86822342 + AT_rich Low_complexity Low_complexity 1 26 0 312 287 0 21 chr12 57463639 57463733 -86818756 + CT-rich Low_complexity Low_complexity 2 93 0 1880 132 7 0 chr12 57464182 57464503 -86817986 + AluSq SINE Alu 10 332 0 191 246 105 0 chr12 57464520 57464577 -86817912 + MIR SINE MIR 102 164 -98 271 221 150 63 chr12 57464741 57464868 -86817621 + MER5B DNA MER1_type 15 152 -26 190 357 0 0 chr12 57465190 57465246 -86817243 + L2 LINE L2 3215 3270 -2 1334 71 0 0 chr12 57466065 57466234 -86816255 + AluSg/x SINE Alu 144 312 0 267 143 0 20 chr12 57466269 57466318 -86816171 + MER5A DNA MER1_type 62 109 -80 256 209 88 77 chr12 57466433 57466524 -86815965 + MIR SINE MIR 101 192 -70 558 315 86 0 chr12 57466626 57466823 -86815666 + MIR SINE MIR 48 261 -1 390 246 35 35 chr12 57467130 57467244 -86815245 + MIR3 SINE MIR 64 177 -31 442 267 164 12 chr12 57467744 57467909 -86814580 - MIR SINE MIR -1 261 72 240 294 0 39 chr12 57468012 57468114 -86814375 + G-rich Low_complexity Low_complexity 5 102 0 442 195 81 74 chr12 57468487 57468636 -86813853 + MIR SINE MIR 56 205 -57 2027 101 0 17 chr12 57468639 57468935 -86813554 - AluSx SINE Alu -21 291 1 2503 61 0 6 chr12 57469171 57469483 -86813006 + AluY SINE Alu 1 310 -1 771 158 12 0 chr12 57471503 57471747 -86810742 + (CA)n Simple_repeat Simple_repeat 1 247 0 22 0 0 0 chr12 57472101 57472123 -86810366 + AT_rich Low_complexity Low_complexity 1 22 0 194 332 47 94 chr12 57473012 57473247 -86809242 - L2 LINE L2 -68 3204 2981 944 165 12 6 chr12 57473266 57473436 -86809053 + AluJb SINE Alu 133 303 -9 253 291 93 93 chr12 57473699 57473768 -86808721 - L2 LINE L2 -537 2777 2709 2243 99 3 6 chr12 57473768 57474081 -86808408 - AluSx SINE Alu 0 312 1 253 291 93 93 chr12 57474081 57474269 -86808220 - L2 LINE L2 -604 2710 2520 186 260 40 0 chr12 57474883 57474933 -86807556 - L3 LINE CR1 -106 1471 1420 2298 98 0 3 chr12 57475080 57475387 -86807102 + AluSq SINE Alu 1 306 -7 199 358 0 0 chr12 57476127 57476208 -86806281 - L3b LINE CR1 -200 1383 1303 256 196 0 0 chr12 57476586 57476632 -86805857 - L2 LINE L2 -2 3311 3266 216 313 87 26 chr12 57478559 57478674 -86803815 + L2 LINE L2 3190 3311 -2 410 246 142 22 chr12 57478855 57479038 -86803451 + MIR SINE MIR 20 224 -38 2331 53 28 56 chr12 57479175 57479495 -86802994 + AluY SINE Alu 1 311 0 2645 52 3 0 chr12 57479506 57479813 -86802676 + AluY SINE Alu 1 308 -3 1857 113 0 0 chr12 57480150 57480398 -86802091 + AluSx SINE Alu 1 248 -64 1380 186 36 0 chr12 57481817 57482065 -86800424 - AluJo SINE Alu -55 257 1 306 345 44 0 chr12 57482426 57482539 -86799950 - L2 LINE L2 -4 3268 3151 2243 120 3 3 chr12 57482782 57483090 -86799399 + AluSx SINE Alu 1 308 -4 259 250 0 0 chr12 57483121 57483169 -86799320 - MIR SINE MIR -124 84 37 506 241 58 63 chr12 57483189 57483226 -86799263 - MIR SINE MIR -44 218 182 1708 156 69 4 chr12 57483226 57483501 -86798988 - AluJb SINE Alu -19 293 1 506 241 58 63 chr12 57483501 57483670 -86798819 - MIR SINE MIR -80 182 13 420 231 189 7 chr12 57484413 57484556 -86797933 - MER5A DNA MER1_type 0 189 21 600 335 65 24 chr12 57484697 57484796 -86797693 + L2 LINE L2 2959 3052 -261 2282 105 0 0 chr12 57484796 57485118 -86797371 - AluSp SINE Alu 0 322 1 600 335 65 24 chr12 57485118 57485351 -86797138 + L2 LINE L2 3052 3306 -7 2108 148 7 0 chr12 57485351 57485661 -86796828 + AluSx SINE Alu 1 312 0 524 295 101 0 chr12 57485994 57486201 -86796288 - L2 LINE L2 -1 3312 3085 267 247 62 0 chr12 57487334 57487415 -86795074 - MIR3 SINE MIR -15 193 108 623 204 116 51 chr12 57488302 57488518 -86793971 - MIR SINE MIR -10 252 23 303 93 0 0 chr12 57488636 57488679 -86793810 + MIR SINE MIR 104 146 -62 330 306 24 8 chr12 57489018 57489142 -86793347 - LTR33 LTR ERVL -5 516 391 350 236 198 62 chr12 57489195 57489437 -86793052 - LTR33 LTR ERVL -235 286 12 277 282 182 0 chr12 57489789 57489899 -86792590 + L2 LINE L2 3182 3311 -2 652 224 89 17 chr12 57490469 57490648 -86791841 + MIR SINE MIR 7 198 -64 639 194 0 0 chr12 57490661 57490769 -86791720 + FLAM_A SINE Alu 1 108 -34 2075 101 35 24 chr12 57490780 57491068 -86791421 - AluSp SINE Alu -22 291 1 2257 119 7 0 chr12 57491717 57492027 -86790462 + AluSq SINE Alu 1 312 -1 313 259 200 29 chr12 57492096 57492266 -86790223 + MIR SINE MIR 64 262 0 252 288 0 14 chr12 57492482 57492555 -86789934 + L2 LINE L2 3159 3230 -83 2418 147 15 11 chr12 57493088 57493557 -86788932 + L1MB7 LINE L1 5714 6184 0 23 0 0 0 chr12 57495284 57495307 -86787182 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr12 57495692 57495719 -86786770 + (TG)n Simple_repeat Simple_repeat 1 27 0 360 0 0 0 chr12 57497395 57497435 -86785054 + (TG)n Simple_repeat Simple_repeat 2 41 0 210 237 0 0 chr12 57500403 57500441 -86782048 + polypyrimidine Low_complexity Low_complexity 2 39 0 207 0 0 0 chr12 57501555 57501578 -86780911 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 315 0 0 0 chr12 57501577 57501612 -86780877 + (CA)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr12 57501916 57501937 -86780552 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 288 0 0 0 chr12 57501936 57501968 -86780521 + (TG)n Simple_repeat Simple_repeat 2 33 0 283 303 9 28 chr12 57502408 57502517 -86779972 + MIR SINE MIR 156 262 0 479 293 149 14 chr12 57502535 57502743 -86779746 - MIR SINE MIR -14 248 13 1695 141 94 51 chr12 57502897 57502961 -86779528 - Charlie1 DNA MER1_type 0 2761 2701 2257 84 7 13 chr12 57502961 57503260 -86779229 + AluSq SINE Alu 1 297 -16 1695 141 94 51 chr12 57503260 57503669 -86778820 - Charlie1 DNA MER1_type -60 2701 1 211 0 88 0 chr12 57503834 57503868 -86778621 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 374 254 51 36 chr12 57504001 57504139 -86778350 - MIR3 SINE MIR -56 152 13 282 295 68 30 chr12 57504796 57504931 -86777558 + MIR SINE MIR 19 156 -60 2520 246 55 23 chr12 57505135 57505209 -86777280 + L2 LINE L2 2209 2279 -1035 2336 94 10 3 chr12 57505209 57505508 -86776981 + AluSc SINE Alu 1 301 -8 2520 246 55 23 chr12 57505508 57506177 -86776312 + L2 LINE L2 2279 2976 -338 202 194 15 45 chr12 57507213 57507280 -86775209 + (CGGGG)n Simple_repeat Simple_repeat 1 65 0 24 0 0 0 chr12 57507344 57507368 -86775121 + GC_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 57507459 57507482 -86775007 + GC_rich Low_complexity Low_complexity 1 23 0 349 312 50 45 chr12 57508766 57508965 -86773524 - L3b LINE CR1 -123 1460 1261 352 221 44 81 chr12 57509502 57509638 -86772851 + L2 LINE L2 3134 3264 -8 2288 102 3 0 chr12 57509745 57510038 -86772451 + AluSp SINE Alu 1 294 -19 1888 139 31 17 chr12 57510038 57510325 -86772164 + AluJb SINE Alu 1 291 -21 2697 41 0 10 chr12 57510325 57510639 -86771850 + AluY SINE Alu 1 311 0 363 305 42 24 chr12 57510994 57511161 -86771328 + MER5B DNA MER1_type 9 178 0 882 182 105 0 chr12 57511171 57511352 -86771137 + MER3 DNA MER1_type 1 200 -9 1378 206 100 14 chr12 57511694 57512053 -86770436 + MLT1B LTR MaLR 1 390 0 1354 220 101 84 chr12 57512569 57513114 -86769375 + MLT2B3 LTR ERVL 1 554 0 1368 242 42 92 chr12 57513366 57513985 -86768504 - MER21B LTR ERV1 -133 730 143 344 272 11 11 chr12 57514107 57514199 -86768290 - MER21B LTR ERV1 -765 98 7 1920 135 4 0 chr12 57514537 57514803 -86767686 + AluSx SINE Alu 32 298 -14 650 251 92 0 chr12 57515157 57515352 -86767137 - MIR SINE MIR -13 249 37 214 286 18 0 chr12 57518049 57518105 -86764384 + L2 LINE L2 3246 3302 -11 739 239 37 21 chr12 57518286 57518474 -86764015 - MIR SINE MIR -70 192 2 2104 95 3 49 chr12 57518681 57518827 -86763662 + AluSq SINE Alu 1 152 -193 2145 110 17 3 chr12 57518827 57519117 -86763372 + AluSp SINE Alu 2 295 -18 2104 95 3 49 chr12 57519117 57519329 -86763160 + AluSq SINE Alu 152 345 0 2208 98 7 20 chr12 57519331 57519626 -86762863 + AluSg SINE Alu 2 292 -18 261 300 0 25 chr12 57519658 57519738 -86762751 + G-rich Low_complexity Low_complexity 1 78 0 2238 104 4 0 chr12 57520130 57520439 -86762050 - AluSg SINE Alu 0 310 1 307 172 0 31 chr12 57520443 57520507 -86761982 + MER5A DNA MER1_type 128 189 0 809 167 0 0 chr12 57520699 57520831 -86761658 + FLAM_C SINE Alu 2 133 0 608 0 0 14 chr12 57522067 57522140 -86760349 + (TAA)n Simple_repeat Simple_repeat 2 73 0 2362 88 7 0 chr12 57522145 57522451 -86760038 + AluSg SINE Alu 1 308 -2 456 126 39 10 chr12 57523215 57523318 -86759171 - AluSg/x SINE Alu -4 306 201 2417 76 0 25 chr12 57523356 57523673 -86758816 + AluY SINE Alu 1 309 -2 457 196 171 63 chr12 57525299 57525427 -86757062 - MIR3 SINE MIR -5 203 53 2083 129 65 22 chr12 57525427 57525620 -86756869 - MLT1B LTR MaLR -2 388 205 2472 84 0 0 chr12 57525620 57525918 -86756571 - AluSq SINE Alu -15 298 1 2083 129 65 22 chr12 57525918 57526095 -86756394 - MLT1B LTR MaLR -185 205 2 457 196 171 63 chr12 57526095 57526124 -86756365 - MIR3 SINE MIR -155 53 29 193 337 31 20 chr12 57526434 57526532 -86755957 - L3b LINE CR1 -178 1405 1307 351 238 12 0 chr12 57527083 57527167 -86755322 + MIR3 SINE MIR 110 194 -14 257 257 43 0 chr12 57528271 57528341 -86754148 + MIR SINE MIR 77 149 -113 2359 93 0 0 chr12 57528517 57528827 -86753662 - AluY SINE Alu 0 311 2 2099 90 7 0 chr12 57529763 57530070 -86752419 - AluSg SINE Alu 0 309 1 195 184 0 0 chr12 57530236 57530274 -86752215 + CT-rich Low_complexity Low_complexity 3 40 0 2608 48 0 0 chr12 57530672 57530983 -86751506 + AluY SINE Alu 1 311 0 261 0 0 0 chr12 57533203 57533232 -86749257 + (TG)n Simple_repeat Simple_repeat 1 29 0 * 318 26 0 0 chr12 57533231 57533270 -86749219 + (GA)n Simple_repeat Simple_repeat 1 39 0 202 91 0 45 chr12 57533325 57533369 -86749120 + (TAA)n Simple_repeat Simple_repeat 1 42 0 318 50 0 0 chr12 57534408 57534448 -86748041 + (CA)n Simple_repeat Simple_repeat 1 40 0 207 0 0 0 chr12 57535034 57535057 -86747432 + (GAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr12 57536726 57536749 -86745740 + (TTG)n Simple_repeat Simple_repeat 2 24 0 26 74 0 0 chr12 57537495 57537549 -86744940 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr12 57537594 57537617 -86744872 + AT_rich Low_complexity Low_complexity 1 23 0 448 341 40 6 chr12 57538343 57538519 -86743970 + MIR SINE MIR 49 230 -32 1961 146 0 3 chr12 57538559 57538854 -86743635 - AluSx SINE Alu -18 294 1 427 290 119 84 chr12 57538895 57539322 -86743167 - MLT1J2 LTR MaLR 0 450 9 370 313 142 0 chr12 57539724 57539900 -86742589 + MIR SINE MIR 50 250 -12 221 355 11 11 chr12 57540231 57540324 -86742165 + MIR SINE MIR 40 132 -76 1014 203 33 0 chr12 57540725 57540937 -86741552 - MIR SINE MIR -39 223 5 725 214 31 27 chr12 57540936 57541131 -86741358 - MIR SINE MIR 0 262 68 * 326 394 64 17 chr12 57546642 57546939 -86735550 + HAL1 LINE L1 982 1292 -1215 2033 123 0 10 chr12 57547583 57547929 -86734560 - AluSx SINE Alu 0 312 3 236 330 11 11 chr12 57548704 57548798 -86733691 + CT-rich Low_complexity Low_complexity 2 95 0 1962 134 7 0 chr12 57548944 57549242 -86733247 + AluJo SINE Alu 1 300 -12 260 340 51 13 chr12 57549967 57550123 -86732366 - L2 LINE L2 -5 3308 3147 448 262 97 7 chr12 57554270 57554415 -86728074 + MARNA DNA Mariner 37 194 -392 466 281 88 0 chr12 57554476 57554636 -86727853 + MARNA DNA Mariner 316 489 -97 1922 127 3 11 chr12 57554985 57555269 -86727220 - AluJo SINE Alu -22 290 9 233 189 75 0 chr12 57555643 57555696 -86726793 - MER91C DNA MER1_type -47 93 37 1528 163 20 47 chr12 57556718 57556860 -86725629 + AluJo SINE Alu 1 145 -167 2101 109 0 20 chr12 57556860 57557162 -86725327 + AluSx SINE Alu 5 300 -12 1528 163 20 47 chr12 57557162 57557320 -86725169 + AluJo SINE Alu 145 293 -19 310 266 28 121 chr12 57557565 57557813 -86724676 - L2 LINE L2 -21 3251 3027 1955 98 45 3 chr12 57559648 57559935 -86722554 + AluY SINE Alu 1 299 -12 2419 69 0 0 chr12 57561706 57562012 -86720477 + AluY SINE Alu 1 306 -5 218 275 18 18 chr12 57562643 57562752 -86719737 + (TGGA)n Simple_repeat Simple_repeat 3 111 0 271 340 0 19 chr12 57563177 57563339 -86719150 + CT-rich Low_complexity Low_complexity 2 160 0 432 215 22 89 chr12 57565070 57565205 -86717284 + MIR SINE MIR 80 205 -57 436 243 243 0 chr12 57565272 57565445 -86717044 - MIR SINE MIR -17 245 31 321 206 164 62 chr12 57566831 57566977 -86715512 - MIR3 SINE MIR -7 201 41 184 349 79 8 chr12 57567091 57567217 -86715272 - MIR SINE MIR -108 154 20 1238 79 22 17 chr12 57567370 57567567 -86714922 - AluSp SINE Alu 0 313 112 901 64 0 0 chr12 57567668 57567778 -86714711 - AluSp SINE Alu -203 110 1 194 152 167 45 chr12 57569946 57570012 -86712477 - L2 LINE L2 -2933 381 308 594 0 0 0 chr12 57570038 57570104 -86712385 + (TG)n Simple_repeat Simple_repeat 1 66 0 258 32 0 0 chr12 57571115 57571146 -86711343 + (A)n Simple_repeat Simple_repeat 1 31 0 2016 148 0 0 chr12 57571833 57572130 -86710359 + AluSx SINE Alu 1 297 -15 298 297 0 11 chr12 57572220 57572311 -86710178 - MIR3 SINE MIR -22 186 97 278 211 0 0 chr12 57572377 57572429 -86710060 + MIR3 SINE MIR 109 160 -48 248 130 22 0 chr12 57572444 57572490 -86709999 + (TTA)n Simple_repeat Simple_repeat 2 48 0 249 263 182 0 chr12 57573216 57573315 -86709174 + MIR3 SINE MIR 6 122 -86 373 259 22 17 chr12 57574799 57574945 -86707544 - MIR3 SINE MIR -53 155 13 255 347 123 40 chr12 57574957 57575234 -86707255 - L2 LINE L2 -40 3232 2933 180 77 0 0 chr12 57575555 57575581 -86706908 + (TG)n Simple_repeat Simple_repeat 2 27 0 2137 107 10 0 chr12 57576109 57576400 -86706089 + AluSx SINE Alu 1 294 -18 252 0 0 0 chr12 57577545 57577573 -86704916 + (CCCCAG)n Simple_repeat Simple_repeat 4 31 0 207 161 0 0 chr12 57578086 57578117 -86704372 + polypurine Low_complexity Low_complexity 3 33 0 203 242 16 16 chr12 57579518 57579580 -86702909 + C-rich Low_complexity Low_complexity 4 65 0 281 358 6 22 chr12 57579959 57580138 -86702351 + CT-rich Low_complexity Low_complexity 1 176 0 994 228 5 0 chr12 57581666 57581863 -86700626 + MIR SINE MIR 31 228 -34 664 237 88 16 chr12 57582069 57582263 -86700226 + MIR SINE MIR 14 221 -41 325 226 179 0 chr12 57583323 57583429 -86699060 - MIR SINE MIR -41 221 97 1635 211 0 0 chr12 57583787 57584088 -86698401 + AluJo SINE Alu 2 302 0 2229 111 0 0 chr12 57584481 57584778 -86697711 + AluSg SINE Alu 5 301 -9 536 245 168 0 chr12 57586732 57586887 -86695602 + MER5A DNA MER1_type 4 184 -5 357 303 0 0 chr12 57586961 57587050 -86695439 - L2 LINE L2 0 3272 3184 632 257 70 26 chr12 57587595 57587867 -86694622 - L2 LINE L2 -611 2703 2420 2450 96 3 0 chr12 57588313 57588625 -86693864 + AluSp SINE Alu 1 313 0 2139 134 10 3 chr12 57588989 57589294 -86693195 - AluJb SINE Alu -5 307 1 2046 119 0 38 chr12 57589385 57589705 -86692784 - AluSx SINE Alu -4 308 1 198 279 18 63 chr12 57590144 57590255 -86692234 + L3b LINE CR1 1323 1428 -155 2494 66 3 7 chr12 57591100 57591403 -86691086 - AluY SINE Alu -9 302 1 1689 185 6 22 chr12 57591409 57591723 -86690766 - AluJb SINE Alu -3 309 1 509 183 0 0 chr12 57591727 57591809 -86690680 - AluJ/FLAM SINE Alu -230 82 1 2078 121 14 0 chr12 57591832 57592142 -86690347 - AluSx SINE Alu 0 314 1 2315 79 10 3 chr12 57592245 57592537 -86689952 - AluSc SINE Alu -15 294 1 225 298 57 16 chr12 57592541 57592665 -86689824 - MIR SINE MIR -62 146 18 275 298 0 39 chr12 57593225 57593329 -86689160 + L3b LINE CR1 1332 1431 -152 183 284 40 27 chr12 57593940 57594014 -86688475 + MIR SINE MIR 107 181 -81 389 304 13 41 chr12 57594225 57594411 -86688078 + CT-rich Low_complexity Low_complexity 1 191 -289 2358 84 0 3 chr12 57594411 57594708 -86687781 - AluY SINE Alu -15 296 1 389 304 13 41 chr12 57594708 57594720 -86687769 + CT-rich Low_complexity Low_complexity 191 480 0 415 376 51 17 chr12 57594927 57595278 -86687211 - L2 LINE L2 -61 3211 2849 277 313 30 24 chr12 57595365 57595532 -86686957 + MIR SINE MIR 4 165 -54 2316 82 0 50 chr12 57595681 57595999 -86686490 + AluY SINE Alu 1 302 -9 2388 86 0 7 chr12 57596007 57596310 -86686179 + AluSg1 SINE Alu 1 301 -8 194 213 0 27 chr12 57597180 57597255 -86685234 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 199 299 63 39 chr12 57597581 57597708 -86684781 + L3b LINE CR1 1294 1423 -160 214 182 0 23 chr12 57598122 57598166 -86684323 + GA-rich Low_complexity Low_complexity 2 44 0 286 228 105 86 chr12 57599192 57599354 -86683135 - MIR SINE MIR -92 170 6 1944 163 0 7 chr12 57599367 57599661 -86682828 + AluJb SINE Alu 1 292 -20 2433 86 0 13 chr12 57599661 57599964 -86682525 + AluSx SINE Alu 1 299 -13 352 327 0 0 chr12 57599964 57600071 -86682418 + MIR SINE MIR 155 261 -1 2008 122 51 17 chr12 57601146 57601440 -86681049 + AluJo SINE Alu 4 307 -5 738 213 100 17 chr12 57602011 57602250 -86680239 - MIR SINE MIR -3 259 1 263 257 20 54 chr12 57603557 57603705 -86678784 + (CAGAGA)n Simple_repeat Simple_repeat 2 144 0 2288 168 54 26 chr12 57604276 57604775 -86677714 + MLT2B2 LTR ERVL 2 514 -1 334 0 43 0 chr12 57605443 57605489 -86677000 + (TG)n Simple_repeat Simple_repeat 2 49 0 357 333 51 0 chr12 57605773 57605929 -86676560 - L2 LINE L2 -8 3264 3101 1939 162 3 16 chr12 57608326 57608634 -86673855 - AluJb SINE Alu -8 304 1 476 261 54 8 chr12 57609049 57609179 -86673310 - L2 LINE L2 0 3272 3137 557 226 81 32 chr12 57609196 57609382 -86673107 - L2 LINE L2 -2 3311 3117 2223 104 0 3 chr12 57610296 57610585 -86671904 - AluSx SINE Alu -4 308 21 1431 132 114 86 chr12 57610590 57610870 -86671619 - AluJo SINE Alu -16 296 9 289 261 109 0 chr12 57611360 57611452 -86671037 + L2 LINE L2 3202 3303 -10 185 369 23 8 chr12 57611463 57611593 -86670896 - L2 LINE L2 -830 2484 2353 21 36 0 0 chr12 57613878 57613906 -86668583 + AT_rich Low_complexity Low_complexity 1 28 0 316 232 18 29 chr12 57614263 57614424 -86668065 - MIR SINE MIR -2 260 29 723 99 9 0 chr12 57614533 57614644 -86667845 + HY1 scRNA scRNA 1 112 0 620 276 72 0 chr12 57614835 57615016 -86667473 + MIR SINE MIR 59 252 -10 2258 110 0 7 chr12 57615198 57615497 -86666992 + AluY SINE Alu 1 297 -14 1259 257 112 24 chr12 57618084 57618261 -86664228 + L2 LINE L2 2537 2697 -616 2214 128 0 0 chr12 57618261 57618558 -86663931 + AluSg SINE Alu 1 297 -13 1259 257 112 24 chr12 57618558 57619105 -86663384 + L2 LINE L2 2697 3295 -18 260 365 0 0 chr12 57619606 57619702 -86662787 + L3b LINE CR1 1299 1394 -189 302 304 58 22 chr12 57620178 57620316 -86662173 + L1MC4a LINE L1 6088 6230 -1578 221 284 78 29 chr12 57620420 57620522 -86661967 - MIR3 SINE MIR -87 121 15 209 108 27 0 chr12 57620723 57620760 -86661729 + CT-rich Low_complexity Low_complexity 3 40 0 377 253 11 0 chr12 57620783 57620874 -86661615 + MIR SINE MIR 56 147 -115 235 224 0 0 chr12 57622555 57622604 -86659885 + L2 LINE L2 3263 3311 -2 402 284 19 13 chr12 57622605 57622760 -86659729 + MIR3 SINE MIR 48 203 -5 201 239 9 80 chr12 57623102 57623215 -86659274 + C-rich Low_complexity Low_complexity 3 107 0 202 328 17 0 chr12 57623538 57623596 -86658893 + MIR SINE MIR 85 143 -65 954 221 24 43 chr12 57624456 57624639 -86657850 - MIR SINE MIR -2 260 82 1579 131 5 182 chr12 57624639 57625083 -86657406 + MER47A DNA MER2_type 1 365 -1 954 221 24 43 chr12 57625083 57625152 -86657337 - MIR SINE MIR -180 82 13 379 283 58 68 chr12 57625090 57625281 -86657208 + MIR SINE MIR 13 201 -61 * 416 283 48 41 chr12 57625439 57625584 -86656905 - MIR SINE MIR -90 172 27 887 139 17 35 chr12 57626398 57626528 -86655961 + MER5B DNA MER1_type 8 136 -42 2151 118 3 16 chr12 57626528 57626842 -86655647 + AluSq SINE Alu 1 310 -3 887 139 17 35 chr12 57626842 57626884 -86655605 + MER5B DNA MER1_type 136 177 -1 519 251 190 6 chr12 57627095 57627258 -86655231 - MIR SINE MIR -68 194 2 243 61 0 0 chr12 57629976 57630009 -86652480 + (TC)n Simple_repeat Simple_repeat 2 34 0 1009 178 0 0 chr12 57630371 57630534 -86651955 + FRAM SINE Alu 11 173 -3 323 156 0 22 chr12 57631177 57631267 -86651222 + C-rich Low_complexity Low_complexity 1 88 0 183 42 0 0 chr12 57631429 57631453 -86651036 + (A)n Simple_repeat Simple_repeat 1 24 0 657 143 54 9 chr12 57631453 57631565 -86650924 - FLAM_C SINE Alu -16 117 1 1684 178 0 18 chr12 57631637 57631918 -86650571 + AluJb SINE Alu 26 301 -11 2594 50 0 3 chr12 57632034 57632335 -86650154 - AluY SINE Alu -11 300 1 1246 86 12 6 chr12 57632800 57632963 -86649526 - AluY SINE Alu -129 182 19 1038 125 19 87 chr12 57632977 57633185 -86649304 + AluJb SINE Alu 108 301 -11 284 284 25 86 chr12 57633364 57633526 -86648963 - MIR SINE MIR -109 153 2 1007 168 6 6 chr12 57634530 57634703 -86647786 - FRAM SINE Alu -4 172 1 198 0 0 0 chr12 57635282 57635304 -86647185 + (CA)n Simple_repeat Simple_repeat 1 22 0 2301 111 0 0 chr12 57635551 57635849 -86646640 + AluSq SINE Alu 1 298 -15 1083 93 0 0 chr12 57636441 57636580 -86645909 - AluSp/q SINE Alu -7 306 168 2056 120 0 47 chr12 57637646 57637963 -86644526 + AluSq SINE Alu 1 302 -11 1344 94 6 0 chr12 57637963 57638133 -86644356 + AluSq SINE Alu 134 304 -9 584 151 27 75 chr12 57640899 57641045 -86641444 - MIR SINE MIR -64 198 60 1532 132 8 37 chr12 57642142 57642385 -86640104 + AluJo SINE Alu 1 236 -76 2347 89 10 0 chr12 57642396 57642700 -86639789 + AluSg1 SINE Alu 1 307 -2 2510 45 0 0 chr12 57643834 57644120 -86638369 + AluY SINE Alu 9 294 -17 184 296 74 0 chr12 57644787 57644868 -86637621 + L2 LINE L2 3184 3270 -43 659 108 108 0 chr12 57645246 57645348 -86637141 - AluSq/x SINE Alu -198 114 2 2130 123 0 13 chr12 57645415 57645715 -86636774 - AluSx SINE Alu -16 296 1 2431 97 0 3 chr12 57646607 57646916 -86635573 - AluSq SINE Alu -5 308 1 1510 188 8 4 chr12 57647056 57647311 -86635178 + AluJo SINE Alu 37 292 -20 1927 85 4 4 chr12 57647424 57647672 -86634817 - AluY SINE Alu -20 291 44 2109 80 15 94 chr12 57647684 57648023 -86634466 - AluSx SINE Alu 0 312 1 2440 92 0 0 chr12 57648094 57648398 -86634091 - AluSq SINE Alu -9 304 1 1572 115 5 0 chr12 57649889 57650098 -86632391 + AluSc SINE Alu 9 218 -91 2289 114 0 0 chr12 57651551 57651848 -86630641 + AluSc SINE Alu 1 297 -12 22 0 0 0 chr12 57652189 57652211 -86630278 + AT_rich Low_complexity Low_complexity 1 22 0 916 142 0 14 chr12 57654026 57654167 -86628322 - FLAM_C SINE Alu -4 139 1 349 175 39 117 chr12 57654711 57654814 -86627675 + MER5B DNA MER1_type 1 95 -83 2230 110 17 0 chr12 57654814 57655113 -86627376 - AluY SINE Alu -7 304 1 2052 115 7 46 chr12 57655913 57656059 -86626430 + AluSx SINE Alu 1 130 -182 2193 119 0 7 chr12 57656059 57656361 -86626128 + AluSx SINE Alu 1 300 -12 2052 115 7 46 chr12 57656361 57656518 -86625971 + AluSx SINE Alu 130 292 -20 1311 193 89 21 chr12 57656654 57656934 -86625555 - AluJo SINE Alu -13 299 1 533 311 125 43 chr12 57657783 57657930 -86624559 - L2 LINE L2 0 3272 3139 2431 98 0 13 chr12 57657930 57658246 -86624243 + AluSx SINE Alu 1 312 0 533 311 125 43 chr12 57658246 57658426 -86624063 - L2 LINE L2 -133 3139 2918 316 216 30 30 chr12 57659799 57659966 -86622523 + CT-rich Low_complexity Low_complexity 1 167 0 25 31 0 0 chr12 57660033 57660065 -86622424 + GC_rich Low_complexity Low_complexity 1 32 0 2330 107 0 3 chr12 57660604 57660902 -86621587 - AluSg SINE Alu -13 297 1 2165 114 13 0 chr12 57662488 57662787 -86619702 + AluSx SINE Alu 1 303 -9 1941 88 107 0 chr12 57662906 57663178 -86619311 + AluY SINE Alu 1 301 -10 217 316 9 70 chr12 57665841 57665955 -86616534 - L3b LINE CR1 -167 1416 1310 2378 99 7 0 chr12 57665961 57666265 -86616224 - AluSq SINE Alu -7 306 1 2296 47 47 0 chr12 57666830 57667109 -86615380 + AluSg SINE Alu 1 292 -18 1035 65 8 0 chr12 57667244 57667368 -86615121 + AluSq/x SINE Alu 2 126 -186 2166 113 3 16 chr12 57667369 57667680 -86614809 + AluSg1 SINE Alu 1 307 -2 517 267 72 5 chr12 57667811 57667993 -86614496 - MIR SINE MIR -49 213 20 183 290 129 43 chr12 57668541 57668634 -86613855 - MIR SINE MIR -62 200 100 669 164 8 31 chr12 57668654 57668782 -86613707 + AluSq/x SINE Alu 2 126 -187 704 85 16 31 chr12 57668984 57669113 -86613376 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 2311 77 0 64 chr12 57669128 57669320 -86613169 - AluSp SINE Alu -5 308 144 2444 62 0 3 chr12 57669320 57669608 -86612881 - AluY SINE Alu -24 287 1 2311 77 0 64 chr12 57669608 57669742 -86612747 - AluSp SINE Alu -169 144 3 1229 94 0 18 chr12 57671197 57671367 -86611122 - AluSg/x SINE Alu -6 306 140 1192 312 30 22 chr12 57671588 57671773 -86610716 + L2 LINE L2 1053 1235 -2079 2300 80 14 0 chr12 57671773 57672060 -86610429 + AluSx SINE Alu 5 295 -17 1192 312 30 22 chr12 57672060 57672335 -86610154 + L2 LINE L2 1235 1520 -1794 2421 110 0 0 chr12 57672335 57672645 -86609844 + AluSx SINE Alu 1 310 -2 1192 312 30 22 chr12 57672645 57672676 -86609813 + L2 LINE L2 1520 1549 -1765 1585 170 98 0 chr12 57673014 57673291 -86609198 + AluJo SINE Alu 3 306 -6 2244 84 11 0 chr12 57673294 57673581 -86608908 + AluSp SINE Alu 2 291 -22 2040 140 13 3 chr12 57673986 57674286 -86608203 + AluSx SINE Alu 1 303 -9 2051 158 0 0 chr12 57674435 57674738 -86607751 + AluSx SINE Alu 1 303 -9 1935 179 0 7 chr12 57674746 57675053 -86607436 + AluJb SINE Alu 1 305 -7 2382 73 7 17 chr12 57675922 57676224 -86606265 + AluSx SINE Alu 4 302 -10 822 224 0 0 chr12 57676495 57676651 -86605838 + MIR3 SINE MIR 46 201 -7 1845 156 0 7 chr12 57676899 57677174 -86605315 + AluJb SINE Alu 33 305 -7 2241 109 0 3 chr12 57677176 57677469 -86605020 + AluSq SINE Alu 1 292 -21 1032 117 32 142 chr12 57677469 57677523 -86604966 + L1M3 LINE L1 5359 5417 -763 2550 51 0 3 chr12 57677523 57677819 -86604670 + AluY SINE Alu 1 295 -16 1032 117 32 142 chr12 57677819 57678045 -86604444 + L1M3 LINE L1 5417 5608 -572 671 218 8 0 chr12 57678046 57678170 -86604319 + AluJo/FLAM SINE Alu 2 126 -186 649 176 0 0 chr12 57678169 57678271 -86604218 - AluSg/x SINE Alu -14 295 194 * 923 118 7 7 chr12 57678421 57678557 -86603932 + AluSp/q SINE Alu 170 305 -8 2235 115 0 3 chr12 57678774 57679087 -86603402 + AluSq SINE Alu 1 312 -1 658 200 0 44 chr12 57679348 57679483 -86603006 + AluJo/FLAM SINE Alu 1 129 -173 2389 89 0 3 chr12 57679486 57679790 -86602699 + AluSg SINE Alu 5 307 -3 22 35 0 0 chr12 57679794 57679823 -86602666 + AT_rich Low_complexity Low_complexity 1 29 0 1839 162 55 3 chr12 57679824 57680114 -86602375 - 7SLRNA srpRNA srpRNA -14 306 2 252 212 15 61 chr12 57680557 57680623 -86601866 + MER20B DNA MER1_type 114 176 -607 919 196 82 5 chr12 57680756 57680975 -86601514 + MER33 DNA MER1_type 1 236 -88 824 147 0 0 chr12 57680975 57681104 -86601385 + AluJb SINE Alu 1 129 -183 1957 110 0 0 chr12 57681104 57681368 -86601121 - AluSq SINE Alu -49 264 1 737 61 9 70 chr12 57681513 57681627 -86600862 + AluY SINE Alu 2 108 -203 180 111 0 0 chr12 57681751 57681778 -86600711 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 2246 91 3 0 chr12 57682299 57682597 -86599892 + AluSp SINE Alu 7 305 -8 240 343 82 8 chr12 57682700 57682834 -86599655 - MER5A DNA MER1_type 0 189 46 2141 127 0 0 chr12 57682834 57683134 -86599355 + AluSx SINE Alu 1 300 -12 209 220 17 17 chr12 57683982 57684041 -86598448 + GA-rich Low_complexity Low_complexity 2 60 0 1481 88 0 0 chr12 57686687 57686915 -86595574 - AluSg/x SINE Alu 0 317 90 1828 155 0 10 chr12 57686993 57687290 -86595199 + AluJb SINE Alu 1 294 -18 2215 100 0 0 chr12 57687292 57687591 -86594898 + AluSx SINE Alu 1 299 -13 2229 113 0 0 chr12 57687622 57687931 -86594558 + AluSx SINE Alu 1 309 -3 1455 165 66 11 chr12 57688077 57688350 -86594139 + AluJo SINE Alu 3 290 -22 1972 145 0 0 chr12 57688374 57688670 -86593819 + AluSx SINE Alu 7 302 -10 2170 209 123 46 chr12 57688926 57689244 -86593245 - L1M4 LINE L1 -2786 3360 3068 1472 186 24 0 chr12 57689244 57689534 -86592955 - AluJo SINE Alu -15 297 1 2170 209 123 46 chr12 57689534 57689731 -86592758 - L1M4 LINE L1 -3078 3068 2887 1600 175 7 21 chr12 57689731 57690016 -86592473 + AluJo SINE Alu 1 281 -31 2170 209 123 46 chr12 57690016 57690282 -86592207 - L1M4 LINE L1 -3259 2887 2500 2340 79 7 0 chr12 57690282 57690585 -86591904 - AluSx SINE Alu -7 305 1 2170 209 123 46 chr12 57690585 57690690 -86591799 - L1M4 LINE L1 -3646 2500 2404 205 222 173 12 chr12 57690949 57691030 -86591459 - MIR SINE MIR -75 187 94 582 298 13 0 chr12 57691769 57691920 -86590569 - MIR3 SINE MIR -11 197 45 470 175 0 0 chr12 57692088 57692168 -86590321 - AluJ/FLAM SINE Alu -222 90 11 231 61 0 0 chr12 57692181 57692214 -86590275 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 1857 117 0 7 chr12 57692224 57692498 -86589991 - AluSx SINE Alu -39 273 2 1004 181 0 0 chr12 57692510 57692676 -86589813 - AluJo SINE Alu 0 302 137 1526 113 82 39 chr12 57692681 57692963 -86589526 - AluSg SINE Alu -6 294 1 773 153 15 0 chr12 57692965 57693096 -86589393 - AluJo SINE Alu -169 133 1 1691 154 56 0 chr12 57694299 57694585 -86587904 + AluSp SINE Alu 1 302 -11 2301 139 19 3 chr12 57694785 57695144 -86587345 - MER47A DNA MER2_type -1 365 1 2512 40 0 0 chr12 57697191 57697490 -86584999 + AluY SINE Alu 1 299 -12 263 164 36 0 chr12 57697762 57697817 -86584672 - AluS SINE Alu -242 59 3 1714 133 42 3 chr12 57697817 57698102 -86584387 - AluSg SINE Alu -14 296 1 1452 100 0 35 chr12 57698237 57698301 -86584188 + AluSq SINE Alu 72 137 -176 2138 82 20 7 chr12 57698301 57698620 -86583869 + AluSp SINE Alu 1 313 0 1452 100 0 35 chr12 57698620 57698786 -86583703 + AluSq SINE Alu 137 294 -19 2191 97 0 3 chr12 57699296 57699594 -86582895 + AluSg SINE Alu 6 302 -8 230 81 27 0 chr12 57700204 57700241 -86582248 + L1MB5 LINE L1 6103 6140 -34 2072 121 3 3 chr12 57700242 57700555 -86581934 + AluSp SINE Alu 1 313 0 1011 169 6 0 chr12 57700555 57700732 -86581757 + AluSg/x SINE Alu 124 301 -9 2442 40 13 0 chr12 57700825 57701127 -86581362 + AluY SINE Alu 1 306 -5 974 136 39 0 chr12 57701129 57701284 -86581205 + AluSg/x SINE Alu 134 294 -16 22 0 0 0 chr12 57701559 57701581 -86580908 + AT_rich Low_complexity Low_complexity 1 22 0 1042 186 25 36 chr12 57701954 57702228 -86580261 + L1MB7 LINE L1 5636 5906 -278 286 256 68 34 chr12 57702287 57702404 -86580085 + MIR SINE MIR 32 152 -110 229 229 36 48 chr12 57704982 57705065 -86577424 - MLT1D LTR MaLR -301 204 123 2024 114 3 0 chr12 57705157 57705446 -86577043 - AluSx SINE Alu -22 290 1 363 208 135 31 chr12 57705457 57705553 -86576936 - MLT1D LTR MaLR -399 106 1 2128 96 0 10 chr12 57713027 57713320 -86569169 + AluSx SINE Alu 7 296 -16 2063 91 17 10 chr12 57713320 57713617 -86568872 + AluSg SINE Alu 1 299 -11 1516 108 0 0 chr12 57714713 57714925 -86567564 - AluSg/x SINE Alu -16 294 83 1779 140 13 27 chr12 57714978 57715278 -86567211 - AluJo SINE Alu -16 296 1 2069 98 10 13 chr12 57715564 57715869 -86566620 + AluYa5 SINE Alu 2 305 -6 1652 158 0 0 chr12 57715880 57716146 -86566343 + AluSq SINE Alu 1 266 -47 345 274 124 0 chr12 57717841 57717954 -86564535 - L2 LINE L2 -6 3307 3181 762 161 73 0 chr12 57718304 57718428 -86564061 + FLAM_C SINE Alu 1 133 0 1311 170 12 12 chr12 57718521 57718762 -86563727 - AluJo SINE Alu -30 282 42 393 58 0 0 chr12 57719125 57719177 -86563312 + (TG)n Simple_repeat Simple_repeat 2 53 0 1679 100 119 8 chr12 57719895 57720155 -86562334 - AluSg1 SINE Alu -20 289 1 2228 99 0 0 chr12 57721174 57721476 -86561013 - AluSx SINE Alu -10 302 1 356 269 123 39 chr12 57722174 57722304 -86560185 - MIR SINE MIR -6 256 116 267 145 40 92 chr12 57722308 57722384 -86560105 + MER116 DNA Mariner 8 79 -1 348 238 12 12 chr12 57722384 57722468 -86560021 - MIR SINE MIR -159 103 20 1370 96 25 0 chr12 57722487 57722616 -86559873 + AluSq SINE Alu 1 138 -175 2251 94 3 0 chr12 57722616 57722925 -86559564 + AluY SINE Alu 1 310 -1 1370 96 25 0 chr12 57722925 57722993 -86559496 + AluSq SINE Alu 138 203 -110 2315 88 0 0 chr12 57723461 57723766 -86558723 + AluY SINE Alu 2 306 -5 2103 91 7 23 chr12 57723776 57724084 -86558405 + AluSq SINE Alu 1 303 -10 1979 105 7 3 chr12 57724089 57724375 -86558114 + AluSg SINE Alu 1 287 -23 353 303 22 0 chr12 57724393 57724494 -86557995 - MIR SINE MIR -63 145 68 205 335 45 39 chr12 57724777 57724932 -86557557 + MIR3 SINE MIR 19 174 -34 2107 84 0 10 chr12 57724940 57725239 -86557250 - AluSp SINE Alu -17 296 1 245 326 187 4 chr12 57725240 57725470 -86557019 - L1MC/D LINE L1 -1999 5809 5538 886 152 25 0 chr12 57725620 57725778 -86556711 + L1MB4 LINE L1 5853 6014 -166 2104 102 0 16 chr12 57725779 57725798 -86556691 - AluY SINE Alu -11 300 282 198 0 0 0 chr12 57725798 57725820 -86556669 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2104 102 0 16 chr12 57725820 57726105 -86556384 - AluY SINE Alu -29 282 1 1050 153 0 0 chr12 57726636 57726799 -86555690 + AluJb SINE Alu 143 305 -7 199 333 16 0 chr12 57728180 57728243 -86554246 + L2 LINE L2 3248 3311 -2 2282 96 0 0 chr12 57728374 57728675 -86553814 + AluSg SINE Alu 1 301 -9 2239 128 0 6 chr12 57733676 57733988 -86548501 - AluJb SINE Alu -2 310 1 2082 99 0 41 chr12 57733999 57734316 -86548173 - AluSx SINE Alu 0 305 1 285 349 0 7 chr12 57734638 57734787 -86547702 + GA-rich Low_complexity Low_complexity 1 148 0 309 26 0 0 chr12 57734888 57734926 -86547563 + (TG)n Simple_repeat Simple_repeat 1 38 0 216 338 21 7 chr12 57738342 57738487 -86544002 + CT-rich Low_complexity Low_complexity 3 149 0 184 171 0 57 chr12 57738653 57738723 -86543766 + G-rich Low_complexity Low_complexity 4 69 0 254 262 0 48 chr12 57739086 57739212 -86543277 + GA-rich Low_complexity Low_complexity 1 120 0 181 291 35 35 chr12 57739659 57739745 -86542744 - MIR3 SINE MIR -7 201 116 * 616 286 48 5 chr12 57739739 57739928 -86542561 + MIR SINE MIR 41 237 -25 312 283 26 9 chr12 57739941 57740054 -86542435 - MIR SINE MIR -60 148 34 2265 108 0 43 chr12 57740741 57740928 -86541561 - AluSx SINE Alu -1 311 142 2387 105 0 0 chr12 57740928 57741241 -86541248 - AluSp SINE Alu 0 313 1 2265 108 0 43 chr12 57741241 57741378 -86541111 - AluSx SINE Alu -170 142 1 21 0 0 0 chr12 57742032 57742053 -86540436 + AT_rich Low_complexity Low_complexity 1 21 0 381 273 115 29 chr12 57744743 57744882 -86537607 - L2 LINE L2 0 3272 3122 322 268 41 21 chr12 57744904 57745001 -86537488 + MER58 DNA MER1_type 1 99 -2321 2284 92 3 29 chr12 57745009 57745324 -86537165 + AluSx SINE Alu 1 307 -5 481 204 10 0 chr12 57745355 57745453 -86537036 + MER58 DNA MER1_type 2316 2414 -6 1669 200 7 0 chr12 57745476 57745776 -86536713 + AluJb SINE Alu 1 302 -10 2183 102 0 3 chr12 57745782 57746091 -86536398 + AluSg SINE Alu 1 308 0 2385 104 0 3 chr12 57746100 57746409 -86536080 + AluSx SINE Alu 2 309 -3 2357 100 3 0 chr12 57746414 57746714 -86535775 + AluSp SINE Alu 1 301 -12 2242 87 0 66 chr12 57746714 57747046 -86535443 + AluY SINE Alu 1 311 0 988 197 18 53 chr12 57747075 57747303 -86535186 - AluJo SINE Alu -11 301 82 1054 182 0 0 chr12 57747585 57747766 -86534723 + FRAM SINE Alu 1 173 -3 2331 92 10 0 chr12 57748201 57748494 -86533995 + AluSq SINE Alu 5 300 -13 841 113 16 8 chr12 57748652 57748776 -86533713 + AluY SINE Alu 1 125 -186 2025 98 6 85 chr12 57748917 57749235 -86533254 - AluSx SINE Alu -19 293 1 23 0 0 0 chr12 57749243 57749266 -86533223 + AT_rich Low_complexity Low_complexity 1 23 0 918 127 14 21 chr12 57749268 57749410 -86533079 - AluJb SINE Alu -47 265 125 708 158 26 0 chr12 57749672 57749786 -86532703 - FLAM_A SINE Alu -16 117 1 238 240 0 0 chr12 57749837 57749887 -86532602 + MIR3 SINE MIR 111 160 -48 736 133 147 0 chr12 57751486 57751629 -86530860 - AluSg/x SINE Alu -29 280 117 2267 106 7 0 chr12 57751804 57752097 -86530392 - AluSq SINE Alu -18 295 1 2016 133 7 10 chr12 57752496 57752797 -86529692 - AluSq SINE Alu -13 300 1 180 0 0 0 chr12 57752825 57752845 -86529644 + (T)n Simple_repeat Simple_repeat 1 20 0 2428 96 0 0 chr12 57753499 57753801 -86528688 - AluSg SINE Alu -8 302 1 280 275 0 0 chr12 57753801 57753881 -86528608 - L1M4 LINE L1 -2618 3528 3449 368 181 257 29 chr12 57753885 57753990 -86528499 - FLAM_C SINE Alu 0 133 5 187 176 176 27 chr12 57754505 57754579 -86527910 + MIR SINE MIR 160 244 -18 270 246 16 66 chr12 57754929 57755112 -86527377 + (TCTCTG)n Simple_repeat Simple_repeat 5 178 0 333 0 0 0 chr12 57755185 57755222 -86527267 + (TG)n Simple_repeat Simple_repeat 2 38 0 419 217 0 0 chr12 57757141 57757224 -86525265 - MIR SINE MIR 0 262 180 2269 100 7 0 chr12 57757480 57757779 -86524710 - AluSx SINE Alu -11 301 1 355 312 57 46 chr12 57757779 57758151 -86524338 - L2 LINE L2 -563 2751 2376 2011 113 7 11 chr12 57758198 57758508 -86523981 - AluSg SINE Alu 0 309 1 40 0 0 0 chr12 57758519 57758559 -86523930 + AT_rich Low_complexity Low_complexity 1 40 0 620 266 50 37 chr12 57758715 57758933 -86523556 - MIR SINE MIR -10 252 32 2404 68 0 43 chr12 57759018 57759343 -86523146 + AluY SINE Alu 1 311 0 313 328 176 36 chr12 57759345 57759595 -86522894 - L2 LINE L2 -20 3252 2968 201 299 157 30 chr12 57759609 57759743 -86522746 - L2 LINE L2 -232 3040 2890 456 214 0 69 chr12 57759830 57759961 -86522528 - MIR SINE MIR -107 155 34 362 293 28 0 chr12 57760044 57760150 -86522339 + MIR SINE MIR 42 150 -112 2370 101 0 3 chr12 57760169 57760477 -86522012 - AluSc SINE Alu -2 307 1 359 110 5 32 chr12 57760477 57760547 -86521942 - AluJb SINE Alu -174 128 86 218 261 0 0 chr12 57760583 57760629 -86521860 + MIR SINE MIR 216 261 -1 1190 215 8 23 chr12 57760909 57761165 -86521324 + MIR SINE MIR 3 254 -8 213 226 0 0 chr12 57762088 57762141 -86520348 + C-rich Low_complexity Low_complexity 1 53 0 206 119 71 0 chr12 57762234 57762276 -86520213 + (CCCGG)n Simple_repeat Simple_repeat 1 45 0 248 256 208 0 chr12 57765131 57765256 -86517233 + MIR3 SINE MIR 28 178 -30 180 0 0 0 chr12 57766298 57766318 -86516171 + (CA)n Simple_repeat Simple_repeat 2 21 0 2274 72 4 4 chr12 57769472 57769773 -86512716 + AluY SINE Alu 2 302 0 2372 82 10 0 chr12 57769773 57770064 -86512425 + AluSp SINE Alu 1 294 -19 773 167 8 0 chr12 57770571 57770703 -86511786 + FLAM_C SINE Alu 1 133 0 2352 75 0 29 chr12 57770707 57771067 -86511422 + AluY SINE Alu 1 311 0 195 42 0 0 chr12 57771202 57771226 -86511263 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 608 47 0 78 chr12 57771226 57771354 -86511135 + SVA Other Other 1 118 -1268 1154 244 71 36 chr12 57771904 57772108 -86510381 + MLT1F LTR MaLR 157 381 -161 2129 118 0 30 chr12 57772108 57772413 -86510076 - AluSx SINE Alu -16 296 1 1154 244 71 36 chr12 57772413 57772573 -86509916 + MLT1F LTR MaLR 381 534 -8 2290 95 7 7 chr12 57772631 57772927 -86509562 - AluSx SINE Alu -16 296 1 2309 120 0 3 chr12 57773017 57773326 -86509163 + AluSx SINE Alu 1 308 -4 387 0 0 0 chr12 57773386 57773429 -86509060 + (TG)n Simple_repeat Simple_repeat 2 44 0 591 133 10 10 chr12 57774052 57774150 -86508339 - AluJ/FLAM SINE Alu -212 100 3 2290 95 7 7 chr12 57774242 57774538 -86507951 + AluSx SINE Alu 1 296 -16 2166 213 52 27 chr12 57774596 57774755 -86507734 - MLT1F LTR MaLR -8 534 380 2235 116 0 23 chr12 57774755 57775058 -86507431 + AluSx SINE Alu 1 296 -16 2166 213 52 27 chr12 57775058 57775419 -86507070 - MLT1F LTR MaLR -162 380 1 1286 199 83 18 chr12 57775477 57775753 -86506736 - AluJo SINE Alu -18 294 1 428 269 32 32 chr12 57775846 57776002 -86506487 - LTR67 LTR ERVL -2 555 400 1842 184 0 3 chr12 57776015 57776308 -86506181 + AluJb SINE Alu 1 292 -20 2139 81 57 7 chr12 57776318 57776601 -86505888 + AluSq SINE Alu 1 297 -16 218 317 83 25 chr12 57776968 57777088 -86505401 + L2 LINE L2 1770 1896 -1418 2181 100 3 14 chr12 57777200 57777491 -86504998 + AluSx SINE Alu 3 290 -22 265 330 78 48 chr12 57777607 57777813 -86504676 + L2 LINE L2 2467 2678 -636 1815 185 0 3 chr12 57777877 57778180 -86504309 + AluJo SINE Alu 1 302 -10 283 368 30 60 chr12 57778181 57778447 -86504042 - MIR SINE MIR 0 262 5 2242 65 33 0 chr12 57778706 57778982 -86503507 - AluY SINE Alu -11 300 16 312 102 0 6 chr12 57779002 57779061 -86503428 - AluY SINE Alu -261 39 1 388 296 59 0 chr12 57779100 57779269 -86503220 - LTR67 LTR ERVL 0 557 379 894 52 0 0 chr12 57779543 57779658 -86502831 + L1PA3 LINE L1 6041 6155 0 1712 160 24 28 chr12 57779855 57780143 -86502346 + AluJo SINE Alu 3 289 -23 374 316 0 0 chr12 57780216 57780333 -86502156 + MIR3 SINE MIR 85 201 -7 383 333 21 37 chr12 57781548 57781737 -86500752 + MER5A DNA MER1_type 1 186 -3 2172 128 3 0 chr12 57781874 57782171 -86500318 + AluSq SINE Alu 1 298 -15 2274 72 23 16 chr12 57782275 57782580 -86499909 - AluY SINE Alu -4 307 1 2069 115 0 3 chr12 57783586 57783923 -86498566 - AluSx SINE Alu 0 336 1 538 227 159 12 chr12 57785028 57785191 -86497298 + MIR3 SINE MIR 4 190 -18 207 0 0 0 chr12 57785819 57785842 -86496647 + (TCTCCC)n Simple_repeat Simple_repeat 2 24 0 6917 61 12 28 chr12 57785842 57787661 -86494828 + SVA Other Other 1 1386 0 2449 73 0 3 chr12 57787738 57788041 -86494448 + AluY SINE Alu 1 302 -9 2125 150 13 30 chr12 57788789 57789162 -86493327 - L1PA16 LINE L1 0 6166 5800 355 233 174 24 chr12 57789261 57789568 -86492921 - MLT1J2 LTR MaLR -7 465 71 1509 94 275 0 chr12 57789807 57790040 -86492449 - AluSx SINE Alu -5 297 1 1600 169 23 20 chr12 57790914 57791216 -86491273 + AluJo SINE Alu 3 305 -7 23 33 0 0 chr12 57791407 57791437 -86491052 + AT_rich Low_complexity Low_complexity 1 30 0 1571 169 46 28 chr12 57791440 57791724 -86490765 + AluJo SINE Alu 1 289 -23 26 0 0 0 chr12 57791727 57791753 -86490736 + AT_rich Low_complexity Low_complexity 1 26 0 2853 7 0 0 chr12 57792117 57792423 -86490066 - AluY SINE Alu -5 306 1 1631 178 68 0 chr12 57792934 57793226 -86489263 - AluJo SINE Alu 0 312 1 2436 89 0 0 chr12 57793357 57793660 -86488829 - AluSg SINE Alu -7 303 1 275 211 0 42 chr12 57793734 57793805 -86488684 + MER94 DNA DNA 5 72 -62 2010 129 0 0 chr12 57793811 57794091 -86488398 + AluSx SINE Alu 23 302 -10 829 159 46 33 chr12 57794617 57794768 -86487721 - BC200 scRNA scRNA -39 161 9 924 186 0 18 chr12 57794854 57795021 -86487468 + AluJb SINE Alu 133 296 -16 1648 161 42 14 chr12 57795047 57795333 -86487156 + AluJb SINE Alu 1 294 -18 1832 132 23 16 chr12 57795766 57796070 -86486419 + L1MA9 LINE L1 5994 6299 -13 1076 165 27 21 chr12 57796135 57796323 -86486166 - MER5A DNA MER1_type 0 189 1 601 227 0 8 chr12 57796399 57796527 -86485962 + FLAM_C SINE Alu 7 133 -10 400 165 22 11 chr12 57796534 57796625 -86485864 + GA-rich Low_complexity Low_complexity 1 92 0 1922 105 85 44 chr12 57797391 57797686 -86484803 - AluSx SINE Alu -5 307 1 1668 175 17 7 chr12 57798079 57798370 -86484119 - AluJb SINE Alu -18 294 1 794 150 0 60 chr12 57798406 57798539 -86483950 + FLAM_C SINE Alu 2 126 -17 423 0 0 0 chr12 57798543 57798590 -86483899 + (CA)n Simple_repeat Simple_repeat 2 48 0 698 212 85 12 chr12 57799461 57799626 -86482863 - MER5B DNA MER1_type 0 178 2 2140 109 0 13 chr12 57799808 57800119 -86482370 + AluSx SINE Alu 2 308 -4 2051 58 0 0 chr12 57800972 57801212 -86481277 - AluSg/x SINE Alu -2 310 71 180 0 0 0 chr12 57801851 57801871 -86480618 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1405 164 65 51 chr12 57803073 57803223 -86479266 - AluJo SINE Alu -15 297 151 255 31 0 0 chr12 57803223 57803255 -86479234 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1405 164 65 51 chr12 57803255 57803397 -86479092 - AluJo SINE Alu -161 151 1 286 270 206 8 chr12 57804326 57804452 -86478037 - MIR3 SINE MIR -6 202 52 928 124 101 18 chr12 57804737 57804906 -86477583 - MER5A DNA MER1_type 0 189 7 2247 105 0 16 chr12 57804939 57805243 -86477246 - AluSg SINE Alu -11 299 1 1120 131 6 11 chr12 57805280 57805455 -86477034 + FRAM SINE Alu 1 173 -3 665 318 19 26 chr12 57806079 57806390 -86476099 + AluJb SINE Alu 3 311 -1 283 211 0 0 chr12 57806391 57806448 -86476041 + L1 LINE L1 2773 2829 -3317 456 186 47 0 chr12 57806449 57806535 -86475954 + HERVL74 LTR ERVL 3086 3175 -2510 42225 66 4 0 chr12 57806550 57812671 -86469818 - L1PA5 LINE L1 0 6154 11 1632 231 27 27 chr12 57812681 57813083 -86469406 + HERVL74 LTR ERVL 3169 3570 -2115 3890 228 70 59 chr12 57813116 57814303 -86468186 + HERVL74 LTR ERVL 3897 5096 -589 2513 178 14 11 chr12 57814332 57814775 -86467714 + MER74A LTR ERVL 1 444 -114 289 191 0 0 chr12 57814771 57814818 -86467671 + MER74B LTR ERVL 545 591 -31 * 251 336 35 42 chr12 57815547 57815690 -86466799 - HERVL40 LTR ERVL -2800 2730 2589 828 204 19 12 chr12 57815778 57815940 -86466549 + FRAM SINE Alu 1 162 -14 3479 121 26 4 chr12 57815996 57817021 -86465468 + L1MA2 LINE L1 5114 6303 -1 3151 150 64 6 chr12 57817040 57817568 -86464921 + L1MC1 LINE L1 5773 6331 -2 323 275 62 19 chr12 57817614 57817711 -86464778 + L1MD2 LINE L1 5254 5362 -800 327 49 0 0 chr12 57817711 57817752 -86464737 + (CA)n Simple_repeat Simple_repeat 1 41 0 323 275 62 19 chr12 57817752 57817814 -86464675 + L1MD2 LINE L1 5362 5420 -742 1115 251 169 6 chr12 57818214 57818402 -86464087 + L1MD2 LINE L1 5935 6091 -268 1784 140 66 0 chr12 57818402 57818688 -86463801 + AluSx SINE Alu 1 305 -7 1115 251 169 6 chr12 57818688 57818854 -86463635 + L1MD2 LINE L1 6091 6347 -12 600 28 0 0 chr12 57819152 57819223 -86463266 + L1P1 LINE L1 5711 5781 -374 21998 29 11 0 chr12 57819224 57822477 -86460012 + L1PA4 LINE L1 2900 6155 0 230 240 70 70 chr12 57822564 57822693 -86459796 + L1ME3A LINE L1 6033 6161 -9 793 194 72 22 chr12 57822803 57822983 -86459506 - MER20 DNA MER1_type -30 189 1 1771 169 0 30 chr12 57823088 57823390 -86459099 + AluJo SINE Alu 1 293 -19 288 0 0 0 chr12 57823783 57823815 -86458674 + (CA)n Simple_repeat Simple_repeat 2 33 0 340 330 48 0 chr12 57824726 57824829 -86457660 + L2 LINE L2 3160 3267 -5 2227 89 7 0 chr12 57825021 57825314 -86457175 + AluY SINE Alu 1 295 -16 416 273 39 47 chr12 57825456 57825584 -86456905 + L2 LINE L2 3171 3297 -16 287 265 34 4 chr12 57825872 57826008 -86456481 + L1M1 LINE L1 5641 5779 -371 2017 30 5 1 chr12 57826072 57826325 -86456164 - L1ME LINE L1 -552 5614 5357 1118 42 0 0 chr12 57826324 57826507 -86455982 + L1PA4 LINE L1 5997 6164 0 * 281 337 79 11 chr12 57826588 57826766 -86455723 - LTR67 LTR ERVL 0 557 368 243 281 18 0 chr12 57826975 57827032 -86455457 - LTR67 LTR ERVL -389 168 111 774 281 82 27 chr12 57827134 57827362 -86455127 - L1M4 LINE L1 -1861 4285 4071 2613 162 47 22 chr12 57827362 57827810 -86454679 - L1PA11 LINE L1 -1 6173 5710 2170 112 7 0 chr12 57827810 57828106 -86454383 - AluSp SINE Alu -15 298 1 2613 162 47 22 chr12 57828106 57828152 -86454337 - L1PA11 LINE L1 -464 5710 5667 774 281 82 27 chr12 57828152 57828520 -86453969 - L1M4 LINE L1 -2075 4071 3656 11872 187 43 20 chr12 57828531 57828617 -86453872 + L1MA4 LINE L1 15 98 -6384 1448 192 41 24 chr12 57828617 57828857 -86453632 + AluJb SINE Alu 1 248 -64 198 0 0 0 chr12 57828857 57828879 -86453610 + (CACTC)n Simple_repeat Simple_repeat 5 26 0 1448 192 41 24 chr12 57828879 57828930 -86453559 + AluJb SINE Alu 248 297 -15 11872 187 43 20 chr12 57828930 57830656 -86451833 + L1MA4 LINE L1 98 1783 -4699 2290 122 0 0 chr12 57830656 57830968 -86451521 + AluSx SINE Alu 1 312 0 11872 187 43 20 chr12 57830968 57831513 -86450976 + L1MA4 LINE L1 1783 2314 -4168 1221 122 231 4 chr12 57831513 57831742 -86450747 + AluSg1 SINE Alu 1 281 -28 231 36 0 0 chr12 57831742 57831770 -86450719 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 11872 187 43 20 chr12 57831770 57831815 -86450674 + L1MA4 LINE L1 2314 2356 -4126 2470 83 0 10 chr12 57831815 57832127 -86450362 + AluSc SINE Alu 1 309 0 11872 187 43 20 chr12 57832127 57836048 -86446441 + L1MA4 LINE L1 2356 6481 -1 320 319 54 43 chr12 57836059 57836451 -86446038 - L1M4 LINE L1 -2478 3668 3273 2610 207 145 14 chr12 57837379 57838269 -86444220 - Charlie2 DNA MER1_type 0 2862 1856 573 251 58 45 chr12 57838280 57838523 -86443966 - Charlie2 DNA MER1_type -2547 315 70 451 173 0 0 chr12 57839013 57839094 -86443395 + AluSp/q SINE Alu 232 312 -1 725 107 0 0 chr12 57839625 57839737 -86442752 - L1MA7 LINE L1 -5 6286 6175 960 249 49 8 chr12 57840306 57840551 -86441938 + MIR SINE MIR 8 262 0 5416 149 25 32 chr12 57840770 57842147 -86440342 - L1PB1 LINE L1 -5 6146 4760 2089 145 0 7 chr12 57842147 57842479 -86440010 - AluSx SINE Alu 0 312 1 5416 149 25 32 chr12 57842479 57842878 -86439611 - L1PB1 LINE L1 -1391 4760 4386 2217 102 3 14 chr12 57842878 57843173 -86439316 + AluSg SINE Alu 1 292 -18 5416 149 25 32 chr12 57843173 57843300 -86439189 - L1PB1 LINE L1 -1765 4386 4260 3125 166 10 3 chr12 57843288 57843873 -86438616 + L1 LINE L1 3516 4104 -2042 * 2137 133 47 0 chr12 57843881 57844264 -86438225 + L1MA4A LINE L1 5901 6301 -2 1719 191 5 66 chr12 57844546 57844939 -86437550 + MER77 LTR ERV1 3 371 -234 3459 219 125 6 chr12 57844957 57845988 -86436501 + L1PB1 LINE L1 6 1159 -5704 13932 193 27 10 chr12 57846016 57851089 -86431400 + L1PB1 LINE L1 1339 6524 -343 653 0 13 0 chr12 57851089 57851166 -86431323 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 13932 193 27 10 chr12 57851166 57851515 -86430974 + L1PB1 LINE L1 6524 6866 -1 1236 206 8 8 chr12 57851540 57851788 -86430701 + MER77 LTR ERV1 358 605 0 27 0 0 0 chr12 57851952 57851979 -86430510 + AT_rich Low_complexity Low_complexity 1 27 0 35 24 0 0 chr12 57852052 57852094 -86430395 + AT_rich Low_complexity Low_complexity 1 42 0 1652 179 35 3 chr12 57852510 57852795 -86429694 + AluJb SINE Alu 1 294 -18 2103 158 41 14 chr12 57852807 57853245 -86429244 - LTR7 LTR ERV1 0 450 1 1294 229 46 29 chr12 57853461 57853920 -86428569 - LTR29 LTR ERV1 0 608 159 2345 80 3 20 chr12 57854072 57854372 -86428117 + AluSg1 SINE Alu 1 295 -14 350 295 17 29 chr12 57854376 57854549 -86427940 - LTR7-int LTR ERV1 -42 6289 6119 5269 77 0 0 chr12 57855989 57856676 -86425813 + L1PA8 LINE L1 5473 6159 -13 2264 97 33 0 chr12 57858451 57858750 -86423739 + AluSc SINE Alu 1 309 0 207 74 0 93 chr12 57858752 57858806 -86423683 + (GGGAA)n Simple_repeat Simple_repeat 3 51 0 1717 165 36 7 chr12 57859718 57860021 -86422468 - AluJo SINE Alu 0 312 1 2109 138 16 13 chr12 57860396 57860701 -86421788 - AluSq SINE Alu -7 306 1 1708 180 150 3 chr12 57861084 57861457 -86421032 + MSTA LTR MaLR 1 428 0 9077 140 11 34 chr12 57861459 57863061 -86419428 + MSTA-int LTR MaLR 3 1567 -13 1891 158 132 13 chr12 57863076 57863455 -86419034 + MSTA LTR MaLR 3 426 -2 360 0 0 0 chr12 57863493 57863533 -86418956 + (TG)n Simple_repeat Simple_repeat 1 40 0 1968 208 92 125 chr12 57864506 57865389 -86417100 - LTR49-int LTR ERV1 -5183 1148 312 4102 103 32 25 chr12 57865389 57866020 -86416469 + MER41B LTR ERV1 1 635 0 1968 208 92 125 chr12 57866020 57866323 -86416166 - LTR49-int LTR ERV1 -6019 312 1 244 211 0 0 chr12 57866326 57866378 -86416111 - LTR49 LTR ERV1 -1 594 543 279 208 0 0 chr12 57866438 57866491 -86415998 - LTR49 LTR ERV1 0 595 543 1019 230 61 28 chr12 57866542 57866965 -86415524 - LTR29 LTR ERV1 -52 570 137 668 168 29 11 chr12 57867848 57868197 -86414292 + GA-rich Low_complexity Low_complexity 1 355 0 316 246 0 0 chr12 57868233 57868302 -86414187 + LTR37B LTR ERV1 6 74 -394 3691 144 61 23 chr12 57868302 57868987 -86413502 + MER50 LTR ERV1 1 711 -23 649 186 123 93 chr12 57868982 57869218 -86413271 + LTR37B LTR ERV1 65 307 -161 * 3806 156 48 14 chr12 57869609 57870310 -86412179 - LTR8A LTR ERV1 -2 725 1 2243 123 0 0 chr12 57871281 57871582 -86410907 + AluSx SINE Alu 1 301 -11 541 306 59 46 chr12 57871700 57872073 -86410416 - MLT1J LTR MaLR -126 385 8 2147 125 139 3 chr12 57872549 57872924 -86409565 + MSTA LTR MaLR 3 428 0 950 177 0 36 chr12 57873821 57874013 -86408476 - LTR39 LTR ERV1 0 783 599 2414 107 34 5 chr12 57874013 57874175 -86408314 - L1P LINE L1 -2465 3681 3525 2107 117 0 0 chr12 57874175 57874491 -86407998 - AluSg SINE Alu 0 316 1 2414 107 34 5 chr12 57874491 57874710 -86407779 - L1P LINE L1 -2621 3525 3288 6716 73 2 2 chr12 57874710 57875709 -86406780 + L1PA7 LINE L1 5149 6147 -7 213 317 0 0 chr12 57875763 57875823 -86406666 + L2 LINE L2 1742 1801 -1513 465 243 125 0 chr12 57875913 57876057 -86406432 + L2 LINE L2 2312 2473 -841 301 348 26 26 chr12 57876326 57876481 -86406008 + L1MC/D LINE L1 3999 4153 -1993 371 277 102 7 chr12 57876544 57876681 -86405808 - L2 LINE L2 -6 3307 3158 402 309 78 16 chr12 57876752 57877303 -86405186 + L1MC/D LINE L1 4252 4836 -1310 1789 140 27 16 chr12 57877475 57877840 -86404649 + L1MA7 LINE L1 5917 6285 -6 564 253 96 56 chr12 57878101 57878299 -86404190 + MIR SINE MIR 57 262 0 340 235 102 99 chr12 57878317 57878658 -86403831 + L1MC/D LINE L1 5291 5631 -537 1235 23 23 6 chr12 57878777 57878948 -86403541 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 3065 117 2 2 chr12 57878955 57879401 -86403088 + MLT2A2 LTR ERVL 8 453 0 237 294 80 12 chr12 57879587 57879750 -86402739 - L1P5 LINE L1 -698 5453 5280 2141 104 47 0 chr12 57879895 57880192 -86402297 - AluSp SINE Alu -2 311 1 417 247 35 74 chr12 57880364 57880595 -86401894 + MLT1J LTR MaLR 290 511 0 899 184 0 0 chr12 57880625 57880766 -86401723 + AluJb SINE Alu 154 294 -18 25 0 0 0 chr12 57880846 57880871 -86401618 + AT_rich Low_complexity Low_complexity 1 25 0 362 300 89 83 chr12 57880871 57881004 -86401485 - L1 LINE L1 -2214 3932 3801 2942 104 22 2 chr12 57881004 57881456 -86401033 + L1MA9 LINE L1 5848 6308 -4 362 300 89 83 chr12 57881456 57881792 -86400697 - L1 LINE L1 -2345 3801 3468 2401 38 0 62 chr12 57881792 57882112 -86400377 - AluY SINE Alu -11 300 1 362 300 89 83 chr12 57882112 57882503 -86399986 - L1 LINE L1 -2678 3468 3080 4644 136 13 3 chr12 57883440 57884147 -86398342 + L1PA15 LINE L1 5452 6165 0 244 261 140 26 chr12 57884356 57884620 -86397869 - L1 LINE L1 -3743 2403 2110 949 187 48 0 chr12 57884784 57884950 -86397539 + MER20 DNA MER1_type 46 219 0 607 299 96 34 chr12 57884954 57885093 -86397396 + L1ME3A LINE L1 4802 4931 -1239 2131 62 7 14 chr12 57885093 57885369 -86397120 + L1PA8 LINE L1 5897 6170 -2 607 299 96 34 chr12 57885369 57886062 -86396427 + L1ME3A LINE L1 4931 5727 -443 1733 146 40 26 chr12 57886062 57886364 -86396125 - AluJo SINE Alu -6 306 1 607 299 96 34 chr12 57886364 57886606 -86395883 + L1ME3A LINE L1 5727 5953 -217 228 43 43 21 chr12 57886626 57886673 -86395816 + (TA)n Simple_repeat Simple_repeat 1 48 0 297 317 89 0 chr12 57887414 57887515 -86394974 - MIR3 SINE MIR -20 188 79 1961 138 113 71 chr12 57887828 57888305 -86394184 - MLT1D LTR MaLR -8 497 1 246 128 0 0 chr12 57888430 57888469 -86394020 + (CA)n Simple_repeat Simple_repeat 2 40 0 191 359 189 20 chr12 57888709 57888806 -86393683 - L2 LINE L2 -5 3267 3188 219 114 0 0 chr12 57888806 57888841 -86393648 + (CA)n Simple_repeat Simple_repeat 2 36 0 191 359 189 20 chr12 57888841 57888991 -86393498 - L2 LINE L2 -84 3188 2978 305 295 72 44 chr12 57888991 57889242 -86393247 - L2 LINE L2 -189 3083 2826 3588 92 12 0 chr12 57889574 57890055 -86392434 + LTR15 LTR ERV1 1 487 -6 1943 109 14 11 chr12 57890236 57890512 -86391977 + AluSg SINE Alu 1 277 -33 215 111 0 44 chr12 57890512 57890557 -86391932 + (AGGGGG)n Simple_repeat Simple_repeat 2 44 0 261 313 206 34 chr12 57891043 57891510 -86390979 - L2 LINE L2 -2411 903 357 819 294 89 78 chr12 57891522 57892501 -86389988 - L1M4 LINE L1 -2981 3165 2176 1069 253 55 88 chr12 57892606 57893132 -86389357 - MLT1J LTR MaLR 0 511 3 25 31 0 0 chr12 57893382 57893414 -86389075 + AT_rich Low_complexity Low_complexity 1 32 0 228 143 0 20 chr12 57893879 57893928 -86388561 + L1MCa LINE L1 2017 2064 -4362 * 259 211 22 22 chr12 57893909 57893999 -86388490 + L1MC4 LINE L1 6614 6703 -1339 324 163 0 0 chr12 57894000 57894105 -86388384 + (TA)n Simple_repeat Simple_repeat 1 105 0 228 305 42 58 chr12 57894109 57894368 -86388121 - HAL1 LINE L1 -1313 1194 941 7297 60 31 0 chr12 57894368 57895475 -86387014 - L1PA8 LINE L1 -2 6170 5035 228 305 42 58 chr12 57895475 57895576 -86386913 - HAL1 LINE L1 -1566 941 840 248 318 45 18 chr12 57896194 57896207 -86386282 - L2 LINE L2 0 3313 3302 1954 138 10 3 chr12 57896207 57896503 -86385986 - AluSx SINE Alu -14 298 1 248 318 45 18 chr12 57896503 57896599 -86385890 - L2 LINE L2 -11 3302 3201 569 338 70 25 chr12 57897006 57897443 -86385046 - L1ME LINE L1 -393 5711 5258 283 207 7 163 chr12 57897948 57898083 -86384406 + L2 LINE L2 3200 3313 0 515 274 74 63 chr12 57898360 57898967 -86383522 - L1ME LINE L1 -1929 4200 3587 329 263 0 0 chr12 57899017 57899093 -86383396 + MER5C DNA MER1_type 6 81 -243 1212 157 79 12 chr12 57899093 57899510 -86382979 - MLT1D LTR MaLR 0 505 1 526 156 107 0 chr12 57899511 57899633 -86382856 + MER5C DNA MER1_type 78 212 -112 363 252 94 16 chr12 57900757 57900884 -86381605 - L1ME LINE L1 -5965 154 18 1633 232 184 32 chr12 57900886 57901438 -86381051 + L2 LINE L2 1822 2289 -1025 2040 173 14 22 chr12 57901438 57901803 -86380686 - MLT1A1 LTR MaLR -3 362 1 210 37 0 0 chr12 57901810 57901837 -86380652 + (TC)n Simple_repeat Simple_repeat 1 27 0 1633 232 184 32 chr12 57901837 57901983 -86380506 + L2 LINE L2 2294 2635 -679 921 257 106 54 chr12 57901983 57902407 -86380082 + MLT1J LTR MaLR 2 447 -64 263 132 264 0 chr12 57902435 57902488 -86380001 + L2 LINE L2 2630 2696 -618 1141 133 12 0 chr12 57902491 57902657 -86379832 - AluYa5 SINE Alu -15 296 129 948 294 114 1 chr12 57902658 57903145 -86379344 + L2 LINE L2 2690 3248 -65 387 219 19 9 chr12 57903145 57903250 -86379239 - LTR33A LTR ERVL -5 518 413 203 254 25 102 chr12 57904259 57904377 -86378112 + L2 LINE L2 2876 2984 -329 316 262 48 7 chr12 57904402 57904547 -86377942 + (CA)n Simple_repeat Simple_repeat 1 151 0 226 343 0 0 chr12 57904837 57904904 -86377585 - MIR SINE MIR -170 92 26 234 0 0 0 chr12 57905343 57905369 -86377120 + (CA)n Simple_repeat Simple_repeat 2 27 0 210 189 11 54 chr12 57905508 57905577 -86376912 + CT-rich Low_complexity Low_complexity 1 45 0 292 167 0 67 chr12 57905674 57905734 -86376755 + L2 LINE L2 3258 3313 0 440 289 107 37 chr12 57907352 57907622 -86374867 + MARNA DNA Mariner 50 338 -248 351 0 0 0 chr12 57908148 57908187 -86374302 + (TG)n Simple_repeat Simple_repeat 2 40 0 1320 147 5 5 chr12 57908220 57908442 -86374047 - AluSg/x SINE Alu 0 307 86 437 40 0 0 chr12 57908442 57908492 -86373997 + AluS SINE Alu 50 99 -213 262 152 0 0 chr12 57909624 57909670 -86372819 + MARNA DNA Mariner 318 363 -223 330 143 0 0 chr12 57910488 57910551 -86371938 + (CA)n Simple_repeat Simple_repeat 1 63 0 303 319 58 37 chr12 57911441 57911629 -86370860 - L2 LINE L2 -438 2876 2685 2515 174 24 3 chr12 57911629 57912198 -86370291 - L1M3 LINE L1 -699 5469 4890 748 176 0 7 chr12 57912202 57912355 -86370134 - L1M3 LINE L1 -1734 4412 4261 1887 168 0 0 chr12 57912356 57912647 -86369842 - AluSc SINE Alu -18 291 1 219 36 0 0 chr12 57912655 57912683 -86369806 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 449 301 43 18 chr12 57912719 57912882 -86369607 - L2 LINE L2 -2018 1296 1130 1848 124 3 47 chr12 57913143 57913316 -86369173 - AluSx SINE Alu -5 307 151 2214 84 17 7 chr12 57913316 57913614 -86368875 - AluY SINE Alu -10 301 1 1848 124 3 47 chr12 57913614 57913739 -86368750 - AluSx SINE Alu -161 151 22 2307 107 0 3 chr12 57914626 57914935 -86367554 + AluSg SINE Alu 3 310 0 1460 164 44 18 chr12 57914935 57915210 -86367279 - AluJo SINE Alu -30 282 1 2099 235 75 5 chr12 57915277 57915877 -86366612 + MER114 LTR ERV 7 648 0 211 215 37 9 chr12 57916014 57916121 -86366368 + (TA)n Simple_repeat Simple_repeat 1 110 0 23 0 0 0 chr12 57916238 57916261 -86366228 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr12 57917491 57917527 -86364962 + AT_rich Low_complexity Low_complexity 1 36 0 308 151 0 0 chr12 57917572 57917625 -86364864 + MER94 DNA DNA 82 134 0 207 288 163 44 chr12 57918198 57918358 -86364131 - L2 LINE L2 -8 3305 3127 292 335 92 29 chr12 57918486 57918659 -86363830 - L2 LINE L2 -339 2975 2792 413 409 15 4 chr12 57918688 57918962 -86363527 - L2 LINE L2 -1674 1640 1364 320 342 110 35 chr12 57918972 57919399 -86363090 - L2 LINE L2 -2069 1245 787 1464 58 0 0 chr12 57920033 57920204 -86362285 - L1PA3 LINE L1 0 6155 5985 276 314 105 35 chr12 57920271 57920835 -86361654 - L1M4 LINE L1 -3314 2832 2230 713 276 69 87 chr12 57920983 57921476 -86361013 - MLT1J LTR MaLR -3 508 25 66 56 0 0 chr12 57921697 57921805 -86360684 + AT_rich Low_complexity Low_complexity 1 108 0 436 307 151 26 chr12 57922005 57922435 -86360054 - HAL1 LINE L1 -873 1634 1151 210 167 0 0 chr12 57922717 57922753 -86359736 + T-rich Low_complexity Low_complexity 1 36 0 220 109 22 22 chr12 57922924 57922970 -86359519 + CT-rich Low_complexity Low_complexity 1 46 0 194 125 0 0 chr12 57923542 57923574 -86358915 - L2 LINE L2 -1 3312 3281 448 293 84 24 chr12 57923967 57924216 -86358273 + L1MC4a LINE L1 5313 5576 -545 * 2501 31 2 0 chr12 57924212 57924618 -86357871 - L1P1 LINE L1 -654 5501 5095 * 4782 39 9 2 chr12 57924592 57925162 -86357327 + L1PA4 LINE L1 5579 6152 -3 641 271 59 24 chr12 57925187 57925442 -86357047 + L1MC4a LINE L1 5582 5845 -1963 37 0 0 0 chr12 57925514 57925551 -86356938 + AT_rich Low_complexity Low_complexity 1 37 0 21 82 0 0 chr12 57925612 57925661 -86356828 + AT_rich Low_complexity Low_complexity 1 49 0 231 36 0 0 chr12 57926552 57926580 -86355909 + (CA)n Simple_repeat Simple_repeat 2 29 0 23 33 0 0 chr12 57926970 57927000 -86355489 + AT_rich Low_complexity Low_complexity 1 30 0 769 196 36 0 chr12 57927566 57927734 -86354755 + L1MA8 LINE L1 6108 6281 -10 2797 175 75 11 chr12 57928247 57928870 -86353619 - Tigger7 DNA MER2_type -23 2564 22 1114 76 0 0 chr12 57929053 57929198 -86353291 + AluSp/q SINE Alu 167 311 -2 1423 145 39 4 chr12 57929225 57929459 -86353030 - MSTB1 LTR MaLR -45 387 146 180 0 0 0 chr12 57929536 57929556 -86352933 + (CCA)n Simple_repeat Simple_repeat 1 20 0 433 278 35 18 chr12 57930997 57931166 -86351323 - MIR3 SINE MIR -16 192 21 22 0 0 0 chr12 57932244 57932266 -86350223 + AT_rich Low_complexity Low_complexity 1 22 0 305 261 43 0 chr12 57932893 57932962 -86349527 + L2 LINE L2 3242 3313 0 1349 153 26 111 chr12 57933424 57933765 -86348724 + AluJo SINE Alu 1 312 0 555 303 108 18 chr12 57934871 57935204 -86347285 + MARNA DNA Mariner 20 382 -204 261 83 0 0 chr12 57936137 57936173 -86346316 + (CA)n Simple_repeat Simple_repeat 1 36 0 735 176 0 16 chr12 57936993 57937118 -86345371 + FRAM SINE Alu 38 160 -16 508 248 32 60 chr12 57937126 57937338 -86345151 + L1ME2 LINE L1 5955 6166 0 276 313 82 15 chr12 57937500 57937634 -86344855 - L2 LINE L2 -9 3263 3121 2092 99 3 29 chr12 57937768 57938082 -86344407 + AluSc SINE Alu 1 306 -3 290 414 17 25 chr12 57938083 57938322 -86344167 - L2 LINE L2 -229 3043 2807 183 320 197 45 chr12 57938528 57939356 -86343133 - L2 LINE L2 -816 2498 1545 210 273 30 0 chr12 57939428 57939494 -86342995 - MIR SINE MIR -131 131 64 623 205 99 12 chr12 57939968 57940029 -86342460 + L1MA9 LINE L1 6089 6143 -169 300 102 0 0 chr12 57940029 57940078 -86342411 + (CA)n Simple_repeat Simple_repeat 2 50 0 623 205 99 12 chr12 57940078 57940187 -86342302 + L1MA9 LINE L1 6143 6274 -38 202 359 0 13 chr12 57940224 57940302 -86342187 - MIR SINE MIR -97 111 35 457 306 60 58 chr12 57941388 57941872 -86340617 + L2 LINE L2 2828 3312 -1 217 286 71 0 chr12 57943007 57943077 -86339412 + L2 LINE L2 3179 3253 -60 249 375 0 0 chr12 57944570 57944658 -86337831 + C-rich Low_complexity Low_complexity 3 90 0 207 0 0 0 chr12 57944790 57944813 -86337676 + (A)n Simple_repeat Simple_repeat 1 23 0 370 280 174 28 chr12 57945760 57945978 -86336511 - MLT1J1 LTR MaLR -128 318 69 2046 165 14 11 chr12 57946710 57947074 -86335415 - MER47A DNA MER2_type -1 365 1 2113 113 0 16 chr12 57947175 57947484 -86335005 + AluSx SINE Alu 1 304 -8 450 243 0 102 chr12 57947539 57947716 -86334773 + L1MC4 LINE L1 7874 8032 -10 604 153 51 0 chr12 57947716 57947834 -86334655 + L1MA8 LINE L1 6158 6281 -10 304 250 15 0 chr12 57947901 57947969 -86334520 + Charlie8 DNA MER1_type 96 164 -2253 364 250 0 0 chr12 57948115 57948187 -86334302 + Charlie8 DNA MER1_type 2345 2416 -1 1650 197 8 58 chr12 57948507 57948887 -86333602 + MLT2D LTR ERVL 6 366 -48 246 32 0 0 chr12 57948921 57948936 -86333553 + (TG)n Simple_repeat Simple_repeat 1 46 0 246 32 0 0 chr12 57948936 57948967 -86333522 + (TG)n Simple_repeat Simple_repeat 2 32 0 281 167 0 0 chr12 57949012 57949060 -86333429 + MLT2D LTR ERVL 417 464 0 1000 263 4 8 chr12 57949148 57949388 -86333101 + MIR SINE MIR 14 252 -10 938 218 134 70 chr12 57949739 57949806 -86332683 - LTR33 LTR ERVL 0 521 460 7432 55 8 0 chr12 57949806 57951496 -86330993 - L1PA6 LINE L1 -16 6138 4441 938 218 134 70 chr12 57951496 57951695 -86330794 - LTR33 LTR ERVL -61 460 275 1382 271 83 34 chr12 57951695 57952260 -86330229 - MLT1E LTR MaLR 0 593 1 938 218 134 70 chr12 57952260 57952461 -86330028 - LTR33 LTR ERVL -246 275 23 194 311 11 11 chr12 57954839 57954929 -86327560 + L2 LINE L2 2812 2901 -371 538 285 48 43 chr12 57954930 57955064 -86327425 + MER91A DNA MER1_type 10 147 -49 2144 96 3 0 chr12 57955064 57955365 -86327124 - AluSx SINE Alu -10 302 1 538 285 48 43 chr12 57955365 57955416 -86327073 + MER91A DNA MER1_type 147 196 0 434 285 102 75 chr12 57955416 57955784 -86326705 + L2 LINE L2 2894 3271 -1 2015 122 0 3 chr12 57957895 57958190 -86324299 + AluJb SINE Alu 1 294 -18 2362 167 9 47 chr12 57959448 57959788 -86322701 - MSTC LTR MaLR -2 426 105 2069 125 0 3 chr12 57959788 57960092 -86322397 - AluSx SINE Alu -8 304 2 2362 167 9 47 chr12 57960092 57960194 -86322295 - MSTC LTR MaLR -323 105 1 5502 241 97 24 chr12 57960194 57961636 -86320853 - MSTC-int LTR MaLR 0 1735 189 7190 98 2 2 chr12 57961645 57962594 -86319895 - THE1B-int LTR MaLR -627 953 5 2256 116 73 14 chr12 57962619 57962963 -86319526 - THE1B LTR MaLR 0 364 1 510 183 10 39 chr12 57962963 57963067 -86319422 + L2 LINE L2 3213 3313 0 614 202 40 0 chr12 57964273 57964397 -86318092 + FLAM_A SINE Alu 1 129 -4 1070 120 6 0 chr12 57964398 57964573 -86317916 + (GGAA)n Simple_repeat Simple_repeat 4 179 0 1083 119 45 0 chr12 57964586 57964763 -86317726 + L1MB2 LINE L1 5985 6169 -2 1159 271 87 26 chr12 57964801 57965295 -86317194 + HAL1b LINE L1 279 802 -546 2886 223 67 71 chr12 57966177 57967657 -86314832 + L1MC4 LINE L1 6557 7888 -107 319 290 90 71 chr12 57967673 57967841 -86314648 + L1M4 LINE L1 2234 2410 -3736 2276 81 7 3 chr12 57967841 57968148 -86314341 + AluSq SINE Alu 1 308 -5 319 290 90 71 chr12 57968148 57968234 -86314255 + L1M4 LINE L1 2410 2493 -3653 732 254 166 18 chr12 57968439 57968656 -86313833 - MIR SINE MIR -2 260 12 1348 288 108 79 chr12 57968656 57969326 -86313163 + L1M4 LINE L1 2748 3418 -2728 2261 93 3 0 chr12 57969326 57969637 -86312852 + AluSq SINE Alu 2 313 0 1348 288 108 79 chr12 57969637 57970177 -86312312 + L1M4 LINE L1 3418 3941 -2205 1487 230 138 44 chr12 57970560 57971038 -86311451 - L2 LINE L2 -1038 2276 1754 866 215 14 48 chr12 57971568 57971777 -86310712 + AluJo SINE Alu 1 202 -110 959 278 97 73 chr12 57972814 57973403 -86309086 + MLT1L LTR MaLR 7 609 -6 589 242 61 18 chr12 57974680 57974845 -86307644 + MIR SINE MIR 20 191 -71 237 151 0 0 chr12 57974976 57975029 -86307460 + (CA)n Simple_repeat Simple_repeat 2 54 0 212 282 28 56 chr12 57975129 57975200 -86307289 + MER5A DNA MER1_type 33 101 -88 248 242 12 170 chr12 57975346 57975511 -86306978 - MIR3 SINE MIR -32 176 38 465 190 147 25 chr12 57976235 57976398 -86306091 + MER53 DNA DNA 6 188 -1 266 311 111 0 chr12 57976402 57976492 -86305997 + L2 LINE L2 3164 3263 -9 261 295 125 36 chr12 57976764 57976876 -86305613 + L2 LINE L2 3150 3271 -1 356 357 111 0 chr12 57977075 57977319 -86305170 - L2 LINE L2 -461 2853 2583 398 297 141 10 chr12 57977895 57978087 -86304402 + MIR SINE MIR 21 237 -25 2157 123 36 27 chr12 57978152 57978486 -86304003 + MER1B DNA MER1_type 1 337 0 529 296 20 31 chr12 57978514 57978710 -86303779 - L2 LINE L2 0 3313 3120 182 306 16 16 chr12 57979391 57979453 -86303036 + MIR SINE MIR 81 142 -66 546 260 90 31 chr12 57979465 57979688 -86302801 - L2 LINE L2 -4 3309 3074 380 287 74 16 chr12 57983067 57983189 -86299300 - MIR SINE MIR -21 241 113 678 167 0 61 chr12 57983475 57983607 -86298882 - AluSg/x SINE Alu 0 310 187 1386 173 0 71 chr12 57983786 57984110 -86298379 + AluJo SINE Alu 1 301 -11 2327 94 0 0 chr12 57984232 57984540 -86297949 - AluSc SINE Alu -1 308 1 351 0 0 0 chr12 57985100 57985139 -86297350 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 226 224 94 24 chr12 57985474 57985559 -86296930 + LTR40b LTR ERVL 362 452 -10 626 81 0 20 chr12 57985695 57985794 -86296695 + L1MA7 LINE L1 6195 6291 0 1872 176 39 62 chr12 57987531 57988048 -86294441 - MLT1D LTR MaLR 0 505 1 376 273 134 135 chr12 57988182 57988542 -86293947 + L2 LINE L2 99 458 -2856 1833 166 13 10 chr12 57988542 57988844 -86293645 + AluJo SINE Alu 1 303 -9 376 273 134 135 chr12 57988844 57989336 -86293153 + L2 LINE L2 458 950 -2364 866 292 57 21 chr12 57989336 57989656 -86292833 + MLT1J LTR MaLR 23 397 -114 1310 309 58 30 chr12 57989702 57990642 -86291847 + L2 LINE L2 2357 3313 0 416 270 114 89 chr12 57991457 57991665 -86290824 - L3 LINE CR1 -108 1469 1249 535 268 51 31 chr12 57991665 57991919 -86290570 - MIR SINE MIR 0 262 4 416 270 114 89 chr12 57991919 57992025 -86290464 - L3 LINE CR1 -328 1249 1147 187 309 67 112 chr12 57992339 57992562 -86289927 + L2 LINE L2 3010 3222 -50 1464 183 129 54 chr12 57994478 57994672 -86287817 + MLT1C LTR MaLR 1 179 -288 1622 147 115 14 chr12 57994672 57994951 -86287538 + AluSx SINE Alu 1 307 -5 1464 183 129 54 chr12 57994951 57995182 -86287307 + MLT1C LTR MaLR 179 458 -9 659 300 5 19 chr12 57995778 57995988 -86286501 - MIR SINE MIR -48 214 8 460 308 8 15 chr12 57996135 57996265 -86286224 + L2 LINE L2 3144 3272 0 1739 88 5 0 chr12 57996372 57996588 -86285901 + AluSc SINE Alu 78 294 -15 904 330 39 11 chr12 57996935 57997401 -86285088 + MARNA DNA Mariner 43 521 -65 183 233 0 0 chr12 57997541 57997584 -86284905 + MIR SINE MIR 47 89 -173 405 308 53 35 chr12 57997601 57997770 -86284719 - MIR3 SINE MIR -7 201 30 222 231 26 64 chr12 58000704 58000860 -86281629 + G-rich Low_complexity Low_complexity 3 152 0 1980 93 43 3 chr12 58004675 58004976 -86277513 - L1PA16 LINE L1 -3 6163 5851 242 148 19 0 chr12 58006355 58006409 -86276080 + (CA)n Simple_repeat Simple_repeat 2 56 0 319 239 68 43 chr12 58006804 58006921 -86275568 + MIR SINE MIR 38 157 -105 295 247 201 52 chr12 58007721 58007895 -86274594 + MIR SINE MIR 51 250 -12 688 222 113 5 chr12 58007927 58008130 -86274359 - MER46C DNA MER2_type -34 304 80 234 353 154 18 chr12 58008577 58008849 -86273640 + L3b LINE CR1 1241 1549 -34 180 0 0 0 chr12 58010064 58010084 -86272405 + (TA)n Simple_repeat Simple_repeat 2 21 0 364 258 16 40 chr12 58011655 58011779 -86270710 + MER91A DNA MER1_type 13 133 -63 200 205 0 0 chr12 58012992 58013031 -86269458 + CT-rich Low_complexity Low_complexity 2 40 0 2246 125 0 13 chr12 58014414 58014726 -86267763 - AluSx SINE Alu -4 308 1 191 61 30 0 chr12 58014755 58014788 -86267701 + (CA)n Simple_repeat Simple_repeat 2 35 0 796 302 24 12 chr12 58014806 58015054 -86267435 + MIR SINE MIR 2 252 -10 296 321 24 22 chr12 58015330 58015464 -86267025 - MIR SINE MIR -65 143 22 360 0 0 0 chr12 58015502 58015542 -86266947 + (CA)n Simple_repeat Simple_repeat 2 41 0 243 0 0 0 chr12 58015541 58015568 -86266921 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 527 284 52 0 chr12 58016914 58017069 -86265420 + MIR SINE MIR 2 164 -98 200 184 0 26 chr12 58017711 58017749 -86264740 + G-rich Low_complexity Low_complexity 3 39 0 2354 104 10 0 chr12 58019425 58019732 -86262757 + AluSq SINE Alu 1 310 -3 334 255 31 20 chr12 58020408 58020506 -86261983 + L3 LINE CR1 1399 1497 -80 534 144 9 27 chr12 58020507 58020618 -86261871 - Charlie5 DNA MER1_type 0 2624 2516 1286 83 0 0 chr12 58020619 58020776 -86261713 - AluSx SINE Alu -20 292 136 632 94 0 0 chr12 58020776 58020861 -86261628 - AluSx SINE Alu -226 86 2 247 127 38 25 chr12 58020861 58020913 -86261576 - Charlie5 DNA MER1_type -105 2519 2469 396 0 0 0 chr12 58020913 58020957 -86261532 + (TG)n Simple_repeat Simple_repeat 2 45 0 1979 151 7 3 chr12 58020958 58021243 -86261246 - AluJb SINE Alu -26 286 1 247 127 38 25 chr12 58021243 58021267 -86261222 - Charlie5 DNA MER1_type -154 2470 2440 2144 131 3 6 chr12 58021268 58021582 -86260907 + AluSp SINE Alu 1 313 0 21 57 0 0 chr12 58021721 58021756 -86260733 + GC_rich Low_complexity Low_complexity 1 35 0 1682 194 0 7 chr12 58021995 58022129 -86260360 + AluJo SINE Alu 1 134 -178 2236 114 3 29 chr12 58022129 58022445 -86260044 + AluSq SINE Alu 1 308 -5 1682 194 0 7 chr12 58022445 58022598 -86259891 + AluJo SINE Alu 134 286 -26 2032 224 76 23 chr12 58023274 58023788 -86258701 - MLT1F LTR MaLR -1 541 1 716 266 62 72 chr12 58024161 58024481 -86258008 - MLT1J LTR MaLR -194 317 1 308 330 155 0 chr12 58024727 58024921 -86257568 - L2 LINE L2 -41 3231 3008 1023 97 0 7 chr12 58024942 58025086 -86257403 + AluSg/x SINE Alu 160 302 -8 539 263 91 20 chr12 58025142 58025340 -86257149 - MIR SINE MIR -19 243 32 2289 95 7 0 chr12 58025402 58025697 -86256792 + AluSg SINE Alu 1 297 -13 2139 124 0 17 chr12 58025894 58026220 -86256269 + AluSx SINE Alu 3 312 0 2085 82 10 17 chr12 58026222 58026515 -86255974 + AluY SINE Alu 1 291 -20 198 0 0 0 chr12 58026520 58026542 -86255947 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 270 286 13 0 chr12 58028873 58028950 -86253539 + MIR SINE MIR 159 236 -26 2571 71 3 0 chr12 58029087 58029396 -86253093 - AluSg SINE Alu 0 310 1 287 367 18 0 chr12 58029624 58029733 -86252756 - MIR3 SINE MIR -7 201 91 2170 126 3 7 chr12 58030082 58030392 -86252097 - AluSx SINE Alu -3 309 1 1925 153 0 20 chr12 58030421 58030749 -86251740 + AluSx SINE Alu 2 312 0 2289 107 3 0 chr12 58030751 58031049 -86251440 + AluSg SINE Alu 1 299 -11 190 160 160 133 chr12 58032006 58032156 -86250333 + MER5A DNA MER1_type 36 189 0 441 270 116 66 chr12 58032435 58032534 -86249955 + L1MC4a LINE L1 5564 5657 -2151 1815 152 35 10 chr12 58032534 58032824 -86249665 + AluSx SINE Alu 1 297 -15 441 270 116 66 chr12 58032824 58032894 -86249595 + L1MC4a LINE L1 5657 5722 -2086 2248 74 56 7 chr12 58032894 58033178 -86249311 + AluSq SINE Alu 1 298 -15 441 270 116 66 chr12 58033178 58033326 -86249163 + L1MC4a LINE L1 5722 5898 -1910 2295 117 10 0 chr12 58033340 58033648 -86248841 + AluSq SINE Alu 1 311 -2 1681 157 35 20 chr12 58033653 58033996 -86248493 + L1MB2 LINE L1 5822 6169 -2 995 109 15 0 chr12 58034002 58034139 -86248350 + AluSg/x SINE Alu 162 300 -10 21 36 0 0 chr12 58034140 58034168 -86248321 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr12 58035940 58035968 -86246521 + AT_rich Low_complexity Low_complexity 1 28 0 1098 166 148 0 chr12 58039304 58039533 -86242956 - AluJb SINE Alu -18 294 32 1403 177 66 35 chr12 58039570 58039858 -86242631 + AluJo SINE Alu 1 297 -5 442 208 0 0 chr12 58040667 58040744 -86241745 - MER96 DNA MER1_type? -86 89 13 438 198 37 0 chr12 58040672 58040753 -86241736 + MER96 DNA MER1_type? 92 175 0 * 2762 0 0 0 chr12 58040930 58041233 -86241256 + AluYa5 SINE Alu 1 303 -8 2127 97 10 10 chr12 58042450 58042758 -86239731 + AluSx SINE Alu 1 308 -4 231 224 0 0 chr12 58043011 58043060 -86239429 + L2 LINE L2 3265 3313 0 920 190 0 0 chr12 58043372 58043530 -86238959 + FAM SINE Alu 10 167 -18 891 130 8 0 chr12 58043538 58043661 -86238828 + FLAM_C SINE Alu 1 124 -9 2071 92 3 3 chr12 58044004 58044314 -86238175 - AluSx SINE Alu 0 310 1 2130 114 3 0 chr12 58045806 58046112 -86236377 - AluSp SINE Alu -6 307 1 1872 137 7 7 chr12 58046747 58047046 -86235443 + AluSx SINE Alu 5 303 -9 2092 95 10 0 chr12 58047257 58047552 -86234937 - AluSc SINE Alu -6 303 6 2008 121 3 16 chr12 58047702 58048017 -86234472 + AluSx SINE Alu 1 311 -1 2013 129 14 0 chr12 58049768 58050062 -86232427 + AluSx SINE Alu 1 298 -14 2470 53 3 0 chr12 58050063 58050363 -86232126 + AluY SINE Alu 2 302 -9 287 206 48 0 chr12 58050363 58050426 -86232063 - MIR3 SINE MIR -27 181 116 200 343 15 15 chr12 58050763 58050830 -86231659 - MIR SINE MIR -119 89 23 543 195 128 40 chr12 58051257 58051406 -86231083 - AluJo SINE Alu -95 217 56 2337 65 7 7 chr12 58051574 58051881 -86230608 - AluY SINE Alu -4 307 1 1976 115 0 3 chr12 58052699 58053041 -86229448 - AluSx SINE Alu 0 341 1 548 227 159 12 chr12 58054149 58054312 -86228177 + MIR3 SINE MIR 4 190 -18 811 142 22 8 chr12 58054669 58054803 -86227686 + AluJo SINE Alu 1 136 -176 2049 81 53 7 chr12 58054803 58055087 -86227402 + AluSq SINE Alu 1 297 -16 245 309 103 24 chr12 58055463 58055589 -86226900 + L2 LINE L2 1770 1905 -1409 2029 100 3 14 chr12 58055695 58055986 -86226503 + AluSx SINE Alu 3 290 -22 304 330 78 48 chr12 58056102 58056308 -86226181 + L2 LINE L2 2467 2678 -636 1661 185 0 3 chr12 58056372 58056675 -86225814 + AluJo SINE Alu 1 302 -10 311 361 34 64 chr12 58056676 58056942 -86225547 - MIR SINE MIR 0 262 5 1203 96 0 0 chr12 58057200 58057366 -86225123 - AluY SINE Alu -11 300 135 2141 105 0 16 chr12 58057403 58057707 -86224782 + AluSg SINE Alu 1 299 -11 938 130 101 18 chr12 58057740 58057909 -86224580 + MER5A DNA MER1_type 7 189 0 284 270 206 8 chr12 58058194 58058320 -86224169 + MIR3 SINE MIR 52 202 -6 35 24 0 0 chr12 58059387 58059429 -86223060 + AT_rich Low_complexity Low_complexity 1 42 0 43 0 0 0 chr12 58059439 58059482 -86223007 + AT_rich Low_complexity Low_complexity 1 43 0 298 0 48 0 chr12 58059989 58060031 -86222458 + (TG)n Simple_repeat Simple_repeat 2 45 0 1692 153 18 3 chr12 58060032 58060314 -86222175 - AluJb SINE Alu -26 286 1 2005 100 10 7 chr12 58060343 58060632 -86221857 + AluSp SINE Alu 6 295 -18 464 217 107 14 chr12 58060647 58060789 -86221700 - MER33 DNA MER1_type -265 59 1 276 125 0 89 chr12 58060801 58060857 -86221632 + L3 LINE CR1 1524 1574 -3 233 146 0 73 chr12 58060862 58060917 -86221572 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1748 139 7 4 chr12 58060949 58061256 -86221233 - AluJo SINE Alu 0 312 12 242 258 0 48 chr12 58061285 58061409 -86221080 + (TCTCTG)n Simple_repeat Simple_repeat 2 119 0 321 228 20 107 chr12 58063429 58063578 -86218911 - MIR SINE MIR -19 243 108 238 238 104 15 chr12 58063605 58063689 -86218800 + MIR SINE MIR 23 97 -111 459 268 9 9 chr12 58063689 58063801 -86218688 + MER5A DNA MER1_type 1 112 -77 269 265 103 17 chr12 58063723 58063827 -86218662 - MER5A DNA MER1_type -23 166 52 * 1704 148 43 13 chr12 58063837 58064140 -86218349 - AluJo SINE Alu 0 312 1 483 222 10 10 chr12 58064515 58064614 -86217875 - FRAM SINE Alu -67 109 11 230 241 0 17 chr12 58064625 58064683 -86217806 + MER5A DNA MER1_type 127 183 -6 * 353 201 148 47 chr12 58064673 58064822 -86217667 + MIR SINE MIR 88 251 -11 267 135 0 0 chr12 58065061 58065098 -86217391 - MIR SINE MIR -147 115 79 213 216 226 59 chr12 58065296 58065398 -86217091 + L2 LINE L2 3153 3271 -1 458 231 115 8 chr12 58066460 58066590 -86215899 - MIR SINE MIR -45 217 74 206 36 71 71 chr12 58066780 58066836 -86215653 + C-rich Low_complexity Low_complexity 3 58 0 212 167 24 0 chr12 58067045 58067087 -86215402 + (TG)n Simple_repeat Simple_repeat 1 43 0 325 301 0 35 chr12 58067709 58067822 -86214667 - L3b LINE CR1 -214 1369 1261 244 211 96 0 chr12 58068379 58068431 -86214058 - MIR SINE MIR -115 147 91 225 94 0 0 chr12 58069324 58069356 -86213133 + (TG)n Simple_repeat Simple_repeat 1 32 0 483 222 10 10 chr12 58070491 58070590 -86211899 - FRAM SINE Alu -67 109 11 230 241 0 17 chr12 58070601 58070659 -86211830 + MER5A DNA MER1_type 127 183 -6 * 353 201 148 47 chr12 58070649 58070798 -86211691 + MIR SINE MIR 88 251 -11 267 135 0 0 chr12 58071037 58071074 -86211415 - MIR SINE MIR -147 115 79 213 216 226 59 chr12 58071272 58071374 -86211115 + L2 LINE L2 3153 3271 -1 225 94 0 0 chr12 58072677 58072709 -86209780 + (CA)n Simple_repeat Simple_repeat 1 32 0 244 211 96 0 chr12 58073602 58073654 -86208835 + MIR SINE MIR 91 147 -115 325 301 0 35 chr12 58074211 58074324 -86208165 + L3b LINE CR1 1261 1369 -214 212 167 24 0 chr12 58074945 58074987 -86207502 + (CA)n Simple_repeat Simple_repeat 1 43 0 206 36 71 71 chr12 58075197 58075253 -86207236 + G-rich Low_complexity Low_complexity 3 58 0 447 204 130 0 chr12 58075443 58075551 -86206938 + MIR SINE MIR 74 195 -67 188 296 267 15 chr12 58077046 58077181 -86205308 - L3b LINE CR1 -79 1504 1336 209 250 42 14 chr12 58078588 58078660 -86203829 + GA-rich Low_complexity Low_complexity 4 77 0 373 244 76 61 chr12 58079648 58079779 -86202710 - MIR3 SINE MIR -73 135 3 323 304 65 0 chr12 58080877 58080969 -86201520 - L2 LINE L2 0 3272 3175 544 265 0 34 chr12 58081364 58081481 -86201008 + L2 LINE L2 3160 3272 0 230 133 0 22 chr12 58084821 58084866 -86197623 + (CCG)n Simple_repeat Simple_repeat 2 45 0 240 277 0 67 chr12 58084870 58084989 -86197500 + C-rich Low_complexity Low_complexity 4 114 0 412 265 106 24 chr12 58085466 58085520 -86196969 - L3b LINE CR1 -95 1488 1440 2224 65 16 7 chr12 58085520 58085827 -86196662 - AluSg SINE Alu 0 310 1 412 265 106 24 chr12 58085827 58085942 -86196547 - L3b LINE CR1 -143 1440 1305 375 23 0 0 chr12 58086929 58086973 -86195516 + (CA)n Simple_repeat Simple_repeat 1 44 0 243 254 0 17 chr12 58086983 58087042 -86195447 - MIR3 SINE MIR -28 180 123 1741 163 3 7 chr12 58088080 58088386 -86194103 - AluJb SINE Alu -7 305 1 822 113 57 0 chr12 58088389 58088513 -86193976 - AluJo/FLAM SINE Alu -179 133 3 370 334 98 30 chr12 58089043 58089216 -86193273 + MIR3 SINE MIR 3 184 -61 1768 174 20 88 chr12 58089291 58089439 -86193050 + L1MD2 LINE L1 5937 6094 -265 2011 117 3 10 chr12 58089439 58089746 -86192743 - AluSx SINE Alu -7 305 1 1768 174 20 88 chr12 58089746 58090051 -86192438 + L1MD2 LINE L1 6094 6359 0 208 271 69 75 chr12 58090056 58090244 -86192245 - L3b LINE CR1 -212 1371 1185 217 305 117 31 chr12 58092880 58093008 -86189481 + L3b LINE CR1 1308 1446 -137 516 309 37 21 chr12 58093133 58093324 -86189165 + MIR3 SINE MIR 15 208 0 366 303 155 7 chr12 58093816 58093971 -86188518 - MIR SINE MIR -6 256 79 910 233 131 4 chr12 58094231 58094476 -86188013 - MER115 DNA AcHobo -7 686 411 541 318 115 28 chr12 58094529 58094815 -86187674 - MER115 DNA AcHobo -381 312 2 253 336 55 39 chr12 58096373 58096501 -86185988 + L3 LINE CR1 1417 1546 -31 317 323 56 12 chr12 58096502 58096663 -86185826 + L3 LINE CR1 1286 1453 -124 513 184 346 0 chr12 58096669 58096805 -86185684 + MER5A DNA MER1_type 1 183 -6 539 247 32 26 chr12 58096863 58097017 -86185472 - MER5A DNA MER1_type 0 189 35 371 329 44 22 chr12 58097058 58097195 -86185294 - MIR3 SINE MIR -49 159 20 265 246 33 0 chr12 58097196 58097257 -86185232 + L3 LINE CR1 1450 1512 -65 1785 134 29 16 chr12 58097773 58098080 -86184409 - AluJb SINE Alu -1 311 1 211 232 18 36 chr12 58098401 58098457 -86184032 + MIR SINE MIR 158 212 -50 776 139 17 0 chr12 58099488 58099603 -86182886 - FLAM_C SINE Alu -26 117 1 755 214 36 36 chr12 58100066 58100262 -86182227 + MIR SINE MIR 6 201 -61 311 309 64 0 chr12 58100318 58100412 -86182077 + L2 LINE L2 3208 3307 -6 1639 131 32 14 chr12 58100599 58100881 -86181608 + AluSx SINE Alu 13 299 -13 413 242 34 79 chr12 58103485 58103663 -86178826 + MIR SINE MIR 47 216 -46 879 254 49 18 chr12 58105203 58105427 -86177062 + MIR SINE MIR 9 239 -23 2027 118 0 37 chr12 58105518 58105839 -86176650 + AluSc SINE Alu 1 309 0 499 68 81 0 chr12 58105920 58105994 -86176495 - MADE1 DNA Mariner 0 80 1 457 297 7 27 chr12 58106938 58107086 -86175403 + MER102b DNA MER1_type 197 341 0 929 249 12 33 chr12 58107971 58108216 -86174273 - MIR SINE MIR -3 259 20 1645 227 52 54 chr12 58109149 58109852 -86172637 + L2 LINE L2 2620 3313 0 258 270 97 97 chr12 58110011 58110248 -86172241 - MIR SINE MIR -14 248 12 181 277 21 0 chr12 58110251 58110298 -86172191 + MER5B DNA MER1_type 1 48 -130 539 278 78 27 chr12 58112059 58112494 -86169995 + MARNA DNA Mariner 64 572 -14 200 387 57 19 chr12 58112697 58112803 -86169686 + L2 LINE L2 3142 3251 -21 248 304 181 7 chr12 58112804 58112942 -86169547 - MIR SINE MIR -1 261 100 321 26 0 0 chr12 58112964 58113002 -86169487 + (CA)n Simple_repeat Simple_repeat 2 39 0 181 196 143 0 chr12 58113845 58113901 -86168588 - MIR3 SINE MIR -34 174 111 849 130 8 15 chr12 58115316 58115447 -86167042 + FLAM_A SINE Alu 4 133 0 2370 54 0 7 chr12 58116528 58116822 -86165667 - AluY SINE Alu -19 292 1 2228 106 3 0 chr12 58118135 58118446 -86164043 + AluSx SINE Alu 1 312 0 550 274 36 24 chr12 58118819 58118987 -86163502 - MIR3 SINE MIR -38 170 1 205 373 132 16 chr12 58119030 58119456 -86163033 + L2 LINE L2 1522 1996 -1318 245 328 161 6 chr12 58119711 58119891 -86162598 + MIR SINE MIR 4 211 -51 320 313 52 22 chr12 58119929 58120063 -86162426 - L3 LINE CR1 -130 1447 1310 1001 255 72 48 chr12 58120086 58120258 -86162231 + L1MC4a LINE L1 5481 5647 -2161 2158 104 0 7 chr12 58120258 58120567 -86161922 + AluSq SINE Alu 1 307 -6 1001 255 72 48 chr12 58120567 58120771 -86161718 + L1MC4a LINE L1 5647 5866 -1942 297 0 0 0 chr12 58120879 58120912 -86161577 + (CA)n Simple_repeat Simple_repeat 2 34 0 1068 321 171 9 chr12 58121032 58121686 -86160803 + L2 LINE L2 1713 2472 -842 446 347 100 16 chr12 58121695 58122015 -86160474 + L2 LINE L2 2627 2973 -341 441 90 0 0 chr12 58122058 58122125 -86160364 + (CA)n Simple_repeat Simple_repeat 1 67 0 1208 181 16 67 chr12 58122335 58122589 -86159900 - MIR SINE MIR -21 241 1 256 354 0 0 chr12 58122589 58122660 -86159829 + L2 LINE L2 3235 3305 -8 310 273 13 0 chr12 58125216 58125293 -86157196 + MIR SINE MIR 159 236 -26 2373 71 3 3 chr12 58125427 58125737 -86156752 - AluSg SINE Alu 0 310 1 298 367 18 0 chr12 58125965 58126074 -86156415 - MIR3 SINE MIR -7 201 91 1882 126 10 10 chr12 58126424 58126733 -86155756 - AluSx SINE Alu -3 309 1 843 127 0 8 chr12 58126762 58126888 -86155601 + FLAM_C SINE Alu 2 126 -17 706 204 179 15 chr12 58127092 58127288 -86155201 + MIR SINE MIR 34 261 -1 315 0 0 0 chr12 58129188 58129223 -86153266 + (CA)n Simple_repeat Simple_repeat 1 35 0 225 345 6 55 chr12 58130248 58130413 -86152076 + C-rich Low_complexity Low_complexity 4 160 0 * 235 294 5 75 chr12 58130301 58130488 -86152001 + CT-rich Low_complexity Low_complexity 5 178 0 196 180 60 40 chr12 58130495 58130545 -86151944 + L2 LINE L2 3246 3296 -17 230 343 9 9 chr12 58130628 58130733 -86151756 - L2 LINE L2 -552 2762 2658 200 188 0 42 chr12 58130743 58130791 -86151698 + CT-rich Low_complexity Low_complexity 4 49 0 252 0 0 0 chr12 58132701 58132729 -86149760 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2159 104 0 3 chr12 58132967 58133275 -86149214 - AluSx SINE Alu -5 307 1 2136 120 0 3 chr12 58133793 58134102 -86148387 - AluSg SINE Alu -2 308 1 368 321 71 18 chr12 58134450 58134674 -86147815 + MIR SINE MIR 13 248 -14 581 259 72 6 chr12 58135078 58135244 -86147245 + MIR3 SINE MIR 3 179 -29 2030 123 10 0 chr12 58136441 58136743 -86145746 - AluSx SINE Alu -7 305 1 213 259 0 17 chr12 58137754 58137812 -86144677 + (CCG)n Simple_repeat Simple_repeat 2 58 0 217 272 158 66 chr12 58140059 58140287 -86142202 + MIR SINE MIR 2 250 -12 2268 104 0 19 chr12 58140529 58140845 -86141644 + AluSx SINE Alu 1 310 -2 234 386 9 0 chr12 58140866 58140980 -86141509 - MIR3 SINE MIR -8 200 86 276 363 40 0 chr12 58141326 58141450 -86141039 + MIR3 SINE MIR 34 162 -46 2772 16 0 10 chr12 58141719 58142031 -86140458 - AluYa5 SINE Alu -2 309 1 1842 184 0 3 chr12 58142041 58142334 -86140155 - AluJb SINE Alu -20 292 1 428 269 32 32 chr12 58142347 58142503 -86139986 + LTR67 LTR ERVL 400 555 -2 833 168 0 22 chr12 58142596 58142733 -86139756 + AluJo SINE Alu 1 134 -178 229 264 11 28 chr12 58143146 58143324 -86139165 + GA-rich Low_complexity Low_complexity 2 176 0 363 235 0 37 chr12 58143346 58143427 -86139062 + A-rich Low_complexity Low_complexity 1 78 0 217 272 158 66 chr12 58144107 58144335 -86138154 + MIR SINE MIR 2 250 -12 2268 104 0 19 chr12 58144577 58144893 -86137596 + AluSx SINE Alu 1 310 -2 223 395 9 0 chr12 58144914 58145028 -86137461 - MIR3 SINE MIR -8 200 86 276 363 40 0 chr12 58145374 58145498 -86136991 + MIR3 SINE MIR 34 162 -46 2508 87 3 0 chr12 58145769 58146080 -86136409 - AluSp SINE Alu -1 312 1 198 0 0 0 chr12 58146080 58146102 -86136387 + (TTG)n Simple_repeat Simple_repeat 1 22 0 2273 72 4 4 chr12 58146102 58146381 -86136108 - AluY SINE Alu -31 280 2 204 307 0 74 chr12 58147497 58147673 -86134816 + C-rich Low_complexity Low_complexity 5 167 0 286 254 103 24 chr12 58149416 58149542 -86132947 - L2 LINE L2 0 3272 3137 785 256 103 0 chr12 58149562 58149765 -86132724 - MIR SINE MIR -7 255 32 1681 179 0 41 chr12 58149780 58149915 -86132574 + AluJb SINE Alu 1 140 -172 2244 130 0 0 chr12 58149915 58150216 -86132273 + AluSx SINE Alu 1 301 -11 1681 179 0 41 chr12 58150216 58150399 -86132090 + AluJb SINE Alu 140 306 -6 1207 154 82 0 chr12 58150399 58150594 -86131895 + AluJb SINE Alu 89 299 -13 2443 79 0 0 chr12 58150790 58151081 -86131408 + AluSg SINE Alu 4 294 -16 348 127 0 0 chr12 58151091 58151146 -86131343 + (TG)n Simple_repeat Simple_repeat 2 56 0 2188 96 55 0 chr12 58152206 58152497 -86129992 - AluSg SINE Alu -3 307 1 416 298 48 52 chr12 58153381 58153629 -86128860 + MIR SINE MIR 14 260 -2 510 274 135 14 chr12 58153809 58154017 -86128472 - MIR SINE MIR -10 252 20 26 0 0 0 chr12 58154125 58154151 -86128338 + AT_rich Low_complexity Low_complexity 1 26 0 578 241 56 20 chr12 58154638 58154833 -86127656 - L2 LINE L2 -3 3310 3109 593 326 21 0 chr12 58159193 58159380 -86123109 + MIR SINE MIR 72 262 0 2303 93 0 22 chr12 58159382 58159694 -86122795 - AluSg1 SINE Alu -4 305 1 181 262 202 0 chr12 58161461 58161545 -86120944 + L2 LINE L2 2948 3048 -224 491 302 131 23 chr12 58161588 58161932 -86120557 - L2 LINE L2 0 3313 2933 27 0 0 0 chr12 58162854 58162881 -86119608 + AT_rich Low_complexity Low_complexity 1 27 0 2079 135 0 22 chr12 58162974 58163285 -86119204 + AluJo SINE Alu 1 304 -8 189 0 0 0 chr12 58163285 58163306 -86119183 + (GA)n Simple_repeat Simple_repeat 2 22 0 2012 138 0 26 chr12 58163569 58163880 -86118609 + AluJo SINE Alu 1 303 -9 189 0 0 0 chr12 58163880 58163901 -86118588 + (GA)n Simple_repeat Simple_repeat 2 22 0 666 337 74 17 chr12 58164216 58164513 -86117976 - L2 LINE L2 -16 3256 2943 2116 142 7 0 chr12 58164520 58164815 -86117674 + AluJo SINE Alu 1 297 -15 467 251 73 42 chr12 58165601 58165732 -86116757 - MER117 DNA MER1_type 0 197 57 2070 154 0 7 chr12 58165732 58166038 -86116451 + AluJo SINE Alu 1 304 -8 467 251 73 42 chr12 58166038 58166097 -86116392 - MER117 DNA MER1_type -140 57 1 691 227 77 27 chr12 58167911 58168131 -86114358 - MIR SINE MIR -27 235 5 2329 90 10 3 chr12 58170172 58170482 -86112007 + AluSx SINE Alu 1 312 0 209 179 0 0 chr12 58171049 58171088 -86111401 + C-rich Low_complexity Low_complexity 1 39 0 217 267 0 33 chr12 58172002 58172092 -86110397 + G-rich Low_complexity Low_complexity 4 90 0 369 43 0 0 chr12 58174631 58174678 -86107811 + (CA)n Simple_repeat Simple_repeat 1 47 0 393 250 125 8 chr12 58174826 58174954 -86107535 + MIR SINE MIR 2 144 -118 241 143 0 61 chr12 58174954 58175003 -86107486 - L2 LINE L2 0 3313 3268 * 443 271 145 0 chr12 58174970 58175136 -86107353 - MIR SINE MIR -10 252 63 213 209 0 0 chr12 58175404 58175447 -86107042 + C-rich Low_complexity Low_complexity 2 44 0 202 328 161 6 chr12 58175954 58176134 -86106355 + MIR SINE MIR 4 211 -51 303 355 35 7 chr12 58176165 58176306 -86106183 - L3 LINE CR1 -123 1454 1310 909 264 65 50 chr12 58176324 58176501 -86105988 + L1MC4a LINE L1 5479 5652 -2156 2355 100 0 7 chr12 58176501 58176811 -86105678 + AluSq SINE Alu 1 308 -5 909 264 65 50 chr12 58176811 58177015 -86105474 + L1MC4a LINE L1 5652 5866 -1942 333 0 0 0 chr12 58177123 58177160 -86105329 + (CA)n Simple_repeat Simple_repeat 2 38 0 939 324 171 9 chr12 58177280 58177934 -86104555 + L2 LINE L2 1713 2472 -842 380 350 100 16 chr12 58177943 58178263 -86104226 + L2 LINE L2 2627 2973 -341 423 92 0 0 chr12 58178306 58178371 -86104118 + (CA)n Simple_repeat Simple_repeat 1 65 0 1130 181 16 67 chr12 58178581 58178835 -86103654 - MIR SINE MIR -21 241 1 239 354 0 0 chr12 58178835 58178906 -86103583 + L2 LINE L2 3235 3305 -8 1837 175 0 0 chr12 58179420 58179706 -86102783 + AluJo SINE Alu 1 286 -26 193 276 51 51 chr12 58180029 58180127 -86102362 + L2 LINE L2 3127 3224 -89 2061 129 3 17 chr12 58180173 58180305 -86102184 + AluJb SINE Alu 1 133 -179 2130 110 3 49 chr12 58180305 58180632 -86101857 + AluSx SINE Alu 1 312 0 2061 129 3 17 chr12 58180632 58180801 -86101688 + AluJb SINE Alu 133 298 -14 198 189 19 38 chr12 58180867 58180920 -86101569 - L2 LINE L2 0 3272 3221 1254 185 4 21 chr12 58182198 58182441 -86100048 + MER8 DNA MER2_type 1 239 0 23 33 0 0 chr12 58182981 58183011 -86099478 + AT_rich Low_complexity Low_complexity 1 30 0 206 299 131 0 chr12 58183729 58183836 -86098653 - MIR SINE MIR -13 249 129 275 272 70 18 chr12 58184140 58184254 -86098235 - L1P3 LINE L1 -318 5836 5717 306 0 0 0 chr12 58184302 58184336 -86098153 + (TA)n Simple_repeat Simple_repeat 2 35 0 3299 186 28 60 chr12 58184359 58184403 -86098086 + L1ME1 LINE L1 5324 5368 -798 1762 134 3 99 chr12 58184403 58184717 -86097772 + AluSx SINE Alu 3 286 -26 3299 186 28 60 chr12 58184717 58185172 -86097317 + L1ME1 LINE L1 5368 5790 -376 2308 89 10 0 chr12 58185172 58185465 -86097024 + AluSp SINE Alu 1 296 -17 3299 186 28 60 chr12 58185465 58185779 -86096710 + L1ME1 LINE L1 5790 6112 -54 202 204 56 0 chr12 58185828 58185882 -86096607 - MIR SINE MIR -123 139 83 273 380 0 0 chr12 58185999 58186091 -86096398 - MIR SINE MIR -92 116 25 669 314 73 5 chr12 58186288 58186508 -86095981 - MIR SINE MIR -25 237 3 729 280 78 103 chr12 58186920 58187191 -86095298 - L1ME4a LINE L1 -1 6120 5844 2282 117 3 7 chr12 58187191 58187500 -86094989 + AluSx SINE Alu 1 308 -4 729 280 78 103 chr12 58187500 58187821 -86094668 - L1ME4a LINE L1 -277 5844 5543 834 242 107 48 chr12 58187874 58188103 -86094386 + L1MC4 LINE L1 7505 7719 -323 1952 138 0 58 chr12 58188103 58188428 -86094061 - AluJb SINE Alu -6 306 1 834 242 107 48 chr12 58188428 58188735 -86093754 + L1MC4 LINE L1 7719 8030 -12 1276 157 58 0 chr12 58188792 58189015 -86093474 + MER46A DNA MER2_type 1 236 0 4677 154 37 28 chr12 58189015 58189358 -86093131 + L1MB2 LINE L1 5269 5607 -564 1773 140 4 4 chr12 58189358 58189623 -86092866 + AluJb SINE Alu 31 295 -17 4677 154 37 28 chr12 58189623 58190167 -86092322 + L1MB2 LINE L1 5607 6164 -7 244 238 113 0 chr12 58190334 58190414 -86092075 - L1MC/D LINE L1 -1905 5903 5815 2035 122 10 6 chr12 58190709 58191020 -86091469 + AluSx SINE Alu 1 312 0 2264 110 0 0 chr12 58192162 58192463 -86090026 - AluSx SINE Alu -11 301 1 211 286 0 14 chr12 58192591 58192661 -86089828 - MIR SINE MIR -51 211 143 296 234 99 36 chr12 58196546 58196657 -86085832 + MIR3 SINE MIR 37 154 -54 227 317 103 37 chr12 58197348 58197591 -86084898 + L2 LINE L2 2323 2581 -733 825 201 0 31 chr12 58197594 58197753 -86084736 - MER45A DNA AcHobo 0 178 25 255 246 103 24 chr12 58198687 58198813 -86083676 - L2 LINE L2 0 3272 3137 748 256 103 0 chr12 58198833 58199036 -86083453 - MIR SINE MIR -7 255 32 1629 173 0 44 chr12 58199051 58199186 -86083303 + AluJb SINE Alu 1 140 -172 2218 130 0 0 chr12 58199186 58199487 -86083002 + AluSx SINE Alu 1 301 -11 1629 173 0 44 chr12 58199487 58199669 -86082820 + AluJb SINE Alu 140 304 -8 1214 158 77 0 chr12 58199669 58199865 -86082624 + AluJb SINE Alu 89 299 -13 2246 77 0 4 chr12 58200061 58200335 -86082154 + AluSg SINE Alu 4 276 -34 315 0 0 0 chr12 58200861 58200896 -86081593 + (CA)n Simple_repeat Simple_repeat 2 36 0 198 103 0 0 chr12 58201130 58201159 -86081330 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 968 112 15 0 chr12 58201858 58201992 -86080497 + AluJo SINE Alu 1 136 -176 22 35 0 0 chr12 58202150 58202179 -86080310 + AT_rich Low_complexity Low_complexity 1 29 0 2309 117 0 0 chr12 58202277 58202586 -86079903 - AluSq SINE Alu -4 309 1 1147 134 50 0 chr12 58202682 58202861 -86079628 + MER5A DNA MER1_type 2 189 0 1388 160 83 49 chr12 58203481 58203804 -86078685 + AluJo SINE Alu 1 312 0 721 113 0 52 chr12 58203805 58203920 -86078569 + L1PA16 LINE L1 6036 6144 -22 1305 133 0 0 chr12 58204331 58204519 -86077970 - AluJb SINE Alu -4 308 121 193 320 0 0 chr12 58205001 58205051 -86077438 + MIR SINE MIR 12 61 -201 251 310 134 0 chr12 58205228 58205370 -86077119 + MIR SINE MIR 71 231 -31 2068 145 0 0 chr12 58205497 58205787 -86076702 + AluJb SINE Alu 1 290 -22 2270 91 7 3 chr12 58205794 58206091 -86076398 + AluSq SINE Alu 1 298 -15 2182 98 11 3 chr12 58206095 58206382 -86076107 + AluSp SINE Alu 2 290 -23 1767 155 7 32 chr12 58206536 58206845 -86075644 - AluJo SINE Alu -11 301 1 300 294 34 15 chr12 58206847 58206983 -86075506 - MER5B DNA MER1_type -37 152 4 1812 155 3 32 chr12 58207251 58207561 -86074928 - AluJo SINE Alu -11 301 1 300 294 34 15 chr12 58207563 58207699 -86074790 - MER5B DNA MER1_type -37 152 4 1001 165 13 0 chr12 58208863 58209021 -86073468 + FAM SINE Alu 5 164 -11 306 255 14 55 chr12 58209254 58209399 -86073090 + AluSp SINE Alu 1 139 -164 1025 158 13 0 chr12 58210717 58210875 -86071614 + FAM SINE Alu 5 164 -11 2117 97 24 3 chr12 58211112 58211400 -86071089 + AluSp SINE Alu 1 294 -19 807 167 8 0 chr12 58211907 58212039 -86070450 + FLAM_C SINE Alu 1 133 0 2315 62 0 31 chr12 58212043 58212334 -86070155 + AluY SINE Alu 1 282 -29 285 51 0 0 chr12 58212345 58212384 -86070105 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 345 202 10 19 chr12 58213145 58213249 -86069240 + GA-rich Low_complexity Low_complexity 3 105 0 342 246 0 0 chr12 58213273 58213342 -86069147 + LTR37B LTR ERV1 6 74 -394 3974 145 63 23 chr12 58213342 58214026 -86068463 + MER50 LTR ERV1 1 711 -23 586 286 76 34 chr12 58214021 58214259 -86068230 + LTR37B LTR ERV1 65 312 -156 * 306 311 20 13 chr12 58214712 58214863 -86067626 - L2 LINE L2 -768 2546 2395 1287 137 5 19 chr12 58214866 58215078 -86067411 + L1PA10 LINE L1 5811 6019 -149 405 243 29 7 chr12 58216185 58216321 -86066168 + L1PB3 LINE L1 6015 6153 -1 1062 192 71 0 chr12 58216338 58216578 -86065911 + L1MA9 LINE L1 6021 6277 -35 24 32 0 0 chr12 58216582 58216613 -86065876 + AT_rich Low_complexity Low_complexity 1 31 0 3084 41 0 0 chr12 58217091 58217456 -86065033 - L1PA4 LINE L1 -5 6150 5786 389 286 44 5 chr12 58217464 58217667 -86064822 + L1MC/D LINE L1 5297 5507 -2278 254 298 58 16 chr12 58217926 58218047 -86064442 + L1M4 LINE L1 4663 4788 -1358 4295 213 78 51 chr12 58218055 58219578 -86062911 - MER31A-int LTR ERV1 -1741 3195 1632 5411 186 61 56 chr12 58219588 58220872 -86061617 - MER31A-int LTR ERV1 -3482 1454 165 672 264 26 0 chr12 58221013 58221168 -86061321 - MER31A-int LTR ERV1 -4763 173 15 250 237 113 52 chr12 58221222 58221319 -86061170 - MER31A LTR ERV1 -2 483 381 2192 238 19 37 chr12 58221375 58221556 -86060933 + L1M4 LINE L1 3775 3958 -2188 306 0 0 0 chr12 58221556 58221590 -86060899 + (CA)n Simple_repeat Simple_repeat 2 35 0 2192 238 19 37 chr12 58221590 58221913 -86060576 + L1M4 LINE L1 3958 4267 -1879 1899 142 64 0 chr12 58221913 58222195 -86060294 + AluSx SINE Alu 1 300 -12 2192 238 19 37 chr12 58222195 58222357 -86060132 + L1M4 LINE L1 4267 4430 -1716 1118 229 18 4 chr12 58222367 58222594 -86059895 + MLT2D LTR ERVL 1 230 -323 213 65 0 0 chr12 58222598 58222629 -86059860 + (TC)n Simple_repeat Simple_repeat 2 32 0 1848 154 3 28 chr12 58222632 58222950 -86059539 + MLT2D LTR ERVL 225 534 -19 510 266 14 0 chr12 58222979 58223118 -86059371 + L1M4 LINE L1 4422 4562 -1584 720 312 36 46 chr12 58223149 58223537 -86058952 - L2 LINE L2 0 3313 2930 275 143 0 0 chr12 58223883 58223925 -86058564 + L1MDb LINE L1 1024 1065 -5344 185 261 0 0 chr12 58223945 58223991 -86058498 - L3 LINE CR1 -258 1319 1274 4460 224 89 45 chr12 58224321 58226610 -86055879 + L1MDb LINE L1 11 2390 -4016 1987 94 4 4 chr12 58226610 58226876 -86055613 + AluY SINE Alu 38 303 -8 4460 224 89 45 chr12 58226876 58226959 -86055530 + L1MDb LINE L1 2390 2468 -3938 1386 235 38 47 chr12 58226997 58227071 -86055418 + L1MDb LINE L1 3584 3657 -2749 2021 45 0 0 chr12 58227071 58227314 -86055175 + L1PA4 LINE L1 5912 6154 -1 1386 235 38 47 chr12 58227314 58227712 -86054777 + L1MDb LINE L1 3657 4052 -2354 3137 166 24 66 chr12 58227714 58228353 -86054136 - LTR9 LTR ERV1 0 612 1 926 171 0 6 chr12 58228357 58228538 -86053951 + L1MDb LINE L1 4056 4235 -2171 1650 219 41 25 chr12 58228545 58228910 -86053579 - MSTD LTR MaLR 0 396 26 333 115 19 0 chr12 58229025 58229077 -86053412 - MSTD-int LTR MaLR -1 1734 1682 310 302 69 0 chr12 58230208 58230324 -86052165 - L2 LINE L2 -13 3259 3136 5262 144 6 3 chr12 58231516 58231923 -86050566 + L1PA7 LINE L1 5 418 -6043 279 0 0 0 chr12 58231923 58231954 -86050535 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5262 144 6 3 chr12 58231954 58232330 -86050159 + L1PA7 LINE L1 418 791 -5670 43427 54 1 1 chr12 58232347 58238496 -86043993 + L1PA4 LINE L1 2 6155 0 27123 104 5 13 chr12 58238535 58242873 -86039616 + L1PA7 LINE L1 918 5188 -1281 2340 98 0 0 chr12 58242873 58243170 -86039319 + AluY SINE Alu 1 297 -14 27123 104 5 13 chr12 58243170 58244430 -86038059 + L1PA7 LINE L1 5188 6456 -13 27 0 0 0 chr12 58244437 58244464 -86038025 + AT_rich Low_complexity Low_complexity 1 27 0 6958 162 6 5 chr12 58244466 58246733 -86035756 + L1PA15 LINE L1 3865 6133 -32 943 129 25 12 chr12 58246740 58246903 -86035586 - L1MC1 LINE L1 -474 5859 5695 306 229 0 0 chr12 58248425 58248521 -86033968 + G-rich Low_complexity Low_complexity 1 96 0 196 0 27 81 chr12 58249323 58249360 -86033129 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 567 103 19 19 chr12 58250327 58250434 -86032055 + (GGAA)n Simple_repeat Simple_repeat 1 107 0 25 90 0 0 chr12 58250612 58250679 -86031810 + AT_rich Low_complexity Low_complexity 1 67 0 5615 77 0 0 chr12 58250774 58251516 -86030973 + L1PA13 LINE L1 5419 6160 -3 409 324 178 5 chr12 58251537 58251756 -86030733 - MIR SINE MIR 0 262 6 305 276 31 35 chr12 58256320 58256511 -86025978 + MIR3 SINE MIR 21 177 -31 1350 68 0 6 chr12 58256538 58256715 -86025774 - L1PA5 LINE L1 0 6154 5979 186 43 0 0 chr12 58256827 58256850 -86025639 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 756 153 73 0 chr12 58257038 58257162 -86025327 + FLAM_C SINE Alu 1 133 0 199 372 9 26 chr12 58257162 58257275 -86025214 - MIR SINE MIR -132 130 20 27 29 0 0 chr12 58257585 58257619 -86024870 + GC_rich Low_complexity Low_complexity 1 34 0 305 276 31 35 chr12 58259146 58259337 -86023152 + MIR3 SINE MIR 21 177 -31 1350 68 0 6 chr12 58259364 58259541 -86022948 - L1PA5 LINE L1 0 6154 5979 186 43 0 0 chr12 58259653 58259676 -86022813 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 756 153 73 0 chr12 58259864 58259988 -86022501 + FLAM_C SINE Alu 1 133 0 227 354 9 26 chr12 58259988 58260101 -86022388 - MIR SINE MIR -132 130 20 253 257 149 14 chr12 58260881 58260955 -86021534 + MIR SINE MIR 34 117 -145 263 384 47 26 chr12 58262523 58262713 -86019776 - MIR3 SINE MIR -5 203 10 635 265 37 51 chr12 58263679 58263894 -86018595 - L2 LINE L2 0 3313 3102 201 306 57 48 chr12 58264293 58264417 -86018072 - MIR3 SINE MIR -81 127 3 203 250 0 0 chr12 58264419 58264475 -86018014 + CT-rich Low_complexity Low_complexity 3 58 0 360 0 0 0 chr12 58265230 58265270 -86017219 + (TTTTA)n Simple_repeat Simple_repeat 4 43 0 369 258 58 26 chr12 58266866 58267028 -86015461 + MIR SINE MIR 20 192 -70 265 303 21 49 chr12 58268840 58268982 -86013507 + MIR SINE MIR 75 212 -50 40 37 0 0 chr12 58269203 58269257 -86013232 + AT_rich Low_complexity Low_complexity 1 54 0 201 212 30 30 chr12 58270688 58270717 -86011772 + (TAAA)n Simple_repeat Simple_repeat 2 30 -37 1453 161 35 53 chr12 58270717 58271002 -86011487 + AluJo SINE Alu 1 280 -32 201 212 30 30 chr12 58271002 58271038 -86011451 + (TAAA)n Simple_repeat Simple_repeat 29 67 0 1133 267 110 2 chr12 58271038 58271476 -86011013 - L1ME3A LINE L1 -59 6111 5627 327 169 0 0 chr12 58271875 58271946 -86010543 + (TA)n Simple_repeat Simple_repeat 2 72 0 3482 67 11 0 chr12 58275309 58275769 -86006720 + L1PA10 LINE L1 5704 6168 0 229 314 66 58 chr12 58275884 58276005 -86006484 + MIR SINE MIR 3 124 -138 * 322 256 39 85 chr12 58275992 58276121 -86006368 - MER5B DNA MER1_type -55 123 1 219 286 0 0 chr12 58276121 58276177 -86006312 - MIR3 SINE MIR -48 160 105 199 283 109 33 chr12 58276828 58276920 -86005569 - MIR SINE MIR -71 137 39 275 304 51 43 chr12 58277327 58277465 -86005024 - L3b LINE CR1 -248 1335 1197 1352 304 36 16 chr12 58278829 58279329 -86003160 - MER115 DNA AcHobo -80 613 104 305 243 115 74 chr12 58279803 58279951 -86002538 - MER5B DNA MER1_type -2 176 23 910 233 5 5 chr12 58279973 58280162 -86002327 - MER5A DNA MER1_type 0 189 1 515 210 185 38 chr12 58280193 58280350 -86002139 + MER5A DNA MER1_type 10 189 0 7325 174 35 4 chr12 58281126 58282606 -85999883 + L1MCa LINE L1 28 1553 -4873 522 199 51 45 chr12 58282991 58283167 -85999322 + MER104 DNA MER2_type 1 177 -3 458 346 37 12 chr12 58283691 58283853 -85998636 + MER91A DNA MER1_type 5 170 -26 1850 197 28 13 chr12 58283886 58284276 -85998213 + MSTD LTR MaLR 1 396 0 350 231 131 8 chr12 58284861 58284991 -85997498 - MIR SINE MIR -3 259 114 2313 184 27 4 chr12 58285141 58285618 -85996871 - MER67C LTR ERV1 0 710 223 305 108 12 72 chr12 58285625 58285708 -85996781 - L1M LINE L1 -1002 5332 5255 2648 183 17 0 chr12 58285709 58286227 -85996262 + L1MB1 LINE L1 5344 5870 -298 345 245 118 0 chr12 58286634 58286736 -85995753 - MIR SINE MIR -65 143 30 2508 52 0 10 chr12 58287128 58287438 -85995051 + AluY SINE Alu 1 307 -4 528 347 55 55 chr12 58287533 58288132 -85994357 - L2 LINE L2 -349 2965 2367 807 191 78 19 chr12 58288134 58288390 -85994099 - LTR37B LTR ERV1 0 468 198 1049 223 199 6 chr12 58288610 58288956 -85993533 - MSTC LTR MaLR -13 415 3 238 344 56 31 chr12 58289181 58289341 -85993148 - L2 LINE L2 -1291 2023 1860 1978 137 156 8 chr12 58289501 58289874 -85992615 - MSTA LTR MaLR 0 428 1 223 290 81 65 chr12 58290705 58290829 -85991660 + MIR3 SINE MIR 3 128 -80 1261 136 93 82 chr12 58291757 58292129 -85990360 - MER67C LTR ERV1 -240 274 5 2400 143 49 12 chr12 58292173 58292579 -85989910 - MSTA LTR MaLR 0 428 8 2193 91 31 6 chr12 58292579 58292969 -85989520 + LTR7 LTR ERV1 1 450 0 13292 132 15 23 chr12 58292969 58295521 -85986968 + HERVH LTR ERV1 1 2830 -4883 2199 149 35 3 chr12 58295521 58295889 -85986600 + HERVH LTR ERV1 3357 3736 -3977 8141 120 3 1 chr12 58295892 58297064 -85985425 + HERVH LTR ERV1 3994 5149 -2564 2546 131 19 5 chr12 58297055 58297476 -85985013 + HERVH LTR ERV1 5590 6016 -1697 * 3748 95 27 9 chr12 58297469 58298016 -85984473 + HERVH LTR ERV1 7157 7713 0 2213 87 31 6 chr12 58298016 58298406 -85984083 + LTR7 LTR ERV1 1 450 0 14337 139 33 18 chr12 58300035 58300635 -85981854 - Tigger1 DNA MER2_type -14 2404 1814 2228 118 0 0 chr12 58300635 58300940 -85981549 - AluSq SINE Alu -8 305 1 14337 139 33 18 chr12 58300940 58302708 -85979781 - Tigger1 DNA MER2_type -604 1814 1 530 302 18 47 chr12 58302738 58302940 -85979549 + MER57A LTR ERV1 127 320 -83 2007 224 44 74 chr12 58302940 58303511 -85978978 - MLT2B3 LTR ERVL 0 554 1 530 302 18 47 chr12 58303511 58303583 -85978906 + MER57A LTR ERV1 320 393 -10 272 206 31 93 chr12 58303710 58303807 -85978682 + MIR SINE MIR 122 212 -50 414 260 16 41 chr12 58304040 58304163 -85978326 + MIR3 SINE MIR 15 134 -74 553 229 85 49 chr12 58304193 58304416 -85978073 + L2 LINE L2 3082 3312 -1 1775 179 38 72 chr12 58304958 58305404 -85977085 + MSTB1 LTR MaLR 1 431 -1 191 385 0 19 chr12 58305430 58305534 -85976955 + L3b LINE CR1 1200 1301 -282 2369 85 0 3 chr12 58305764 58306057 -85976432 + AluSq SINE Alu 1 292 -21 675 182 34 55 chr12 58306225 58306498 -85975991 + MER4C LTR ERV1 1 325 -339 * 1174 196 6 120 chr12 58306484 58306825 -85975664 + MER4C LTR ERV1 149 450 -15 1268 187 124 26 chr12 58306833 58307184 -85975305 + MER4C-int LTR ERV1 1 462 -6136 3610 144 36 15 chr12 58307185 58307775 -85974714 + MER41B LTR ERV1 1 602 -33 468 150 12 0 chr12 58307777 58307857 -85974632 + MER4C-int LTR ERV1 494 574 -6024 703 146 16 16 chr12 58307859 58307982 -85974507 + HERVH LTR ERV1 1998 2120 -2760 1521 135 42 13 chr12 58307982 58308219 -85974270 + MER61A LTR ERV1 1 244 -99 349 216 0 27 chr12 58308232 58308306 -85974183 + HERVH LTR ERV1 7642 7713 0 746 91 0 18 chr12 58308306 58308416 -85974073 + LTR7 LTR ERV1 1 108 -342 8978 179 3 8 chr12 58308416 58310018 -85972471 + HERVH LTR ERV1 6103 7696 -17 381 78 141 16 chr12 58310018 58310082 -85972407 + LTR7 LTR ERV1 64 135 -315 2218 182 55 53 chr12 58310255 58310744 -85971745 - LTR2B LTR ERV1 0 490 1 667 128 0 28 chr12 58310744 58310853 -85971636 - Harlequin LTR ERV1 0 6896 6791 * 1858 114 40 3 chr12 58310850 58311162 -85971327 + MER4-int LTR ERV1 2170 4824 -393 832 264 22 6 chr12 58311153 58311335 -85971154 + MER4-int LTR ERV1 2121 2305 -3641 * 1424 161 86 101 chr12 58311437 58311951 -85970538 + MER4-int LTR ERV1 1807 3052 -2894 822 155 81 0 chr12 58311953 58312101 -85970388 - LTR48B LTR ERV1 -94 550 391 * 1261 226 206 17 chr12 58312099 58312506 -85969983 - LTR48 LTR ERV1 -301 486 3 2665 103 31 14 chr12 58313189 58313547 -85968942 - THE1B LTR MaLR 0 364 1 12067 111 8 1 chr12 58313547 58315115 -85967374 - THE1B-int LTR MaLR 0 1580 2 2277 163 14 25 chr12 58315116 58315484 -85967005 - THE1B LTR MaLR 0 364 1 4470 95 5 10 chr12 58315528 58316129 -85966360 + MER4A LTR ERV1 3 600 0 1145 174 102 8 chr12 58316444 58316680 -85965809 - MER2 DNA MER2_type 0 345 88 940 230 6 0 chr12 58316708 58316886 -85965603 - MER8 DNA MER2_type -60 179 1 23 68 0 0 chr12 58316886 58316930 -85965559 + AT_rich Low_complexity Low_complexity 1 44 0 315 104 0 0 chr12 58317069 58317117 -85965372 + (TG)n Simple_repeat Simple_repeat 2 49 0 2965 121 14 5 chr12 58317171 58317591 -85964898 + MER57B LTR ERV1 4 427 -7 216 211 19 0 chr12 58317598 58317650 -85964839 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 22 35 0 0 chr12 58317673 58317702 -85964787 + AT_rich Low_complexity Low_complexity 1 29 0 2911 6 0 0 chr12 58318751 58319063 -85963426 + AluYb8 SINE Alu 1 312 -6 21 100 0 0 chr12 58319226 58319296 -85963193 + AT_rich Low_complexity Low_complexity 1 70 0 373 104 194 0 chr12 58320777 58320844 -85961645 - MADE1 DNA Mariner 0 80 1 5963 157 29 33 chr12 58321423 58323402 -85959087 - L1MA8 LINE L1 0 6291 4318 2511 74 0 0 chr12 58324636 58324945 -85957544 + AluSq SINE Alu 1 309 -4 779 240 193 62 chr12 58325103 58325493 -85956996 + HAL1 LINE L1 1881 2365 -142 249 33 0 0 chr12 58325493 58325523 -85956966 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 779 240 193 62 chr12 58325523 58325682 -85956807 + HAL1 LINE L1 2365 2502 -5 3464 167 1 37 chr12 58325718 58326372 -85956117 - L1MA8 LINE L1 -1812 4334 3704 2653 48 0 6 chr12 58326827 58327139 -85955350 + AluY SINE Alu 1 310 -1 1364 116 108 46 chr12 58327526 58327767 -85954722 + THE1B LTR MaLR 1 256 -108 21 0 0 0 chr12 58327837 58327858 -85954631 + AT_rich Low_complexity Low_complexity 1 21 0 278 100 29 100 chr12 58328353 58328423 -85954066 - L1MB3 LINE L1 -28 6155 6091 7829 203 47 17 chr12 58328429 58330923 -85951566 - L1MA4 LINE L1 -279 6021 3451 2234 129 3 0 chr12 58330923 58331234 -85951255 - AluSx SINE Alu 0 312 1 7829 203 47 17 chr12 58331234 58331310 -85951179 - L1MA4 LINE L1 -2849 3451 3379 2012 74 0 0 chr12 58332097 58332362 -85950127 - AluY SINE Alu 0 304 40 380 324 54 29 chr12 58332580 58332784 -85949705 + MIR SINE MIR 54 262 0 2015 141 20 0 chr12 58333043 58333347 -85949142 - AluSx SINE Alu -2 310 1 374 293 73 57 chr12 58333567 58333791 -85948698 - HAL1b LINE L1 -807 541 307 1745 98 0 65 chr12 58333791 58334096 -85948393 - AluY SINE Alu 0 311 36 374 293 73 57 chr12 58334096 58334240 -85948249 - HAL1b LINE L1 -1041 307 167 44164 45 6 0 chr12 58334356 58340470 -85942019 - L1PA4 LINE L1 0 6155 7 1022 98 6 49 chr12 58340545 58340660 -85941829 - L1MA4A LINE L1 0 6303 6195 2298 125 103 52 chr12 58340660 58341067 -85941422 + MSTA LTR MaLR 1 428 0 1022 98 6 49 chr12 58341067 58341114 -85941375 - L1MA4A LINE L1 -108 6195 6148 304 94 19 19 chr12 58341109 58341162 -85941327 + L1ME3A LINE L1 5893 5945 -225 252 221 39 0 chr12 58341213 58341290 -85941199 - L1M LINE L1 -810 5374 5295 689 277 114 17 chr12 58341353 58341507 -85940982 - L1M4 LINE L1 -1198 4948 4810 1830 146 10 26 chr12 58341507 58341816 -85940673 - AluSx SINE Alu -8 304 1 689 277 114 17 chr12 58341816 58342075 -85940414 - L1M4 LINE L1 -1336 4810 4485 1828 75 4 4 chr12 58342076 58342329 -85940160 - L1PA8 LINE L1 -4 6168 5916 258 311 78 39 chr12 58342476 58342656 -85939833 + LTR16C LTR ERVL 268 454 -37 1196 289 89 41 chr12 58342823 58344005 -85938484 + L1ME3A LINE L1 4409 5647 -523 3286 162 69 9 chr12 58344006 58344635 -85937854 - MER39 LTR ERV1 0 707 1 878 239 42 24 chr12 58344666 58344955 -85937534 + L1ME3A LINE L1 5638 5931 -239 280 278 10 0 chr12 58344957 58345054 -85937435 + L1ME3A LINE L1 6058 6155 -15 6386 126 19 4 chr12 58345263 58346259 -85936230 - L1MC1 LINE L1 0 6333 5323 216 135 0 0 chr12 58346799 58346836 -85935653 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr12 58347252 58347273 -85935216 + AT_rich Low_complexity Low_complexity 1 21 0 1125 178 62 0 chr12 58347627 58347835 -85934654 + AluJo SINE Alu 87 307 -5 1221 221 72 7 chr12 58347835 58348265 -85934224 + L1 LINE L1 3037 3494 -2652 644 146 188 35 chr12 58348308 58348452 -85934037 - FRAM SINE Alu 0 166 1 2479 207 40 20 chr12 58349853 58350559 -85931930 - Tigger7 DNA MER2_type -8 2479 1 324 70 0 0 chr12 58350951 58350994 -85931495 + (TG)n Simple_repeat Simple_repeat 2 44 0 192 135 0 0 chr12 58351743 58351780 -85930709 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 43882 43 2 1 chr12 58351853 58358001 -85924488 + L1PA3 LINE L1 1 6152 -3 264 50 0 0 chr12 58358011 58358051 -85924438 + L1PB3 LINE L1 6115 6154 0 405 0 0 0 chr12 58358066 58358111 -85924378 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 202 314 21 36 chr12 58358565 58358705 -85923784 + L2 LINE L2 39 176 -3138 648 246 70 33 chr12 58358759 58358974 -85923515 + L2 LINE L2 3079 3301 -12 427 191 0 0 chr12 58360771 58360865 -85921624 + L1 LINE L1 4617 4710 -1436 25 0 0 0 chr12 58360876 58360901 -85921588 + AT_rich Low_complexity Low_complexity 1 25 0 284 236 101 95 chr12 58360999 58361266 -85921223 - L1M4 LINE L1 -777 5369 5098 1659 160 79 77 chr12 58361266 58361697 -85920792 + MSTB1 LTR MaLR 1 432 0 284 236 101 95 chr12 58361697 58361755 -85920734 - L1M4 LINE L1 -1048 5098 5042 1841 219 26 0 chr12 58362561 58363017 -85919472 - L1MD1 LINE L1 -1 6241 5774 3117 240 60 42 chr12 58363039 58364395 -85918094 - L1MD1 LINE L1 -1038 5108 3729 986 192 10 0 chr12 58364386 58364589 -85917900 - L1M2 LINE L1 -5128 1721 1517 * 739 205 55 5 chr12 58364584 58364784 -85917705 + L1 LINE L1 5166 5375 -771 * 759 217 3 46 chr12 58364802 58365020 -85917469 - L1M2 LINE L1 -5333 1516 1264 4831 220 26 6 chr12 58365044 58366285 -85916204 - L1M3 LINE L1 -724 5444 4181 4101 250 45 26 chr12 58366276 58367722 -85914767 - L1M3 LINE L1 -2531 3615 2143 * 21 36 0 0 chr12 58367795 58367823 -85914666 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr12 58367981 58368015 -85914474 + AT_rich Low_complexity Low_complexity 1 34 0 342 312 47 12 chr12 58368524 58368694 -85913795 + MIR SINE MIR 49 224 -38 24 0 0 0 chr12 58368947 58368971 -85913518 + AT_rich Low_complexity Low_complexity 1 24 0 278 292 34 0 chr12 58369052 58369141 -85913348 + MIR SINE MIR 63 154 -108 2774 216 26 16 chr12 58369175 58369819 -85912670 - MER82 DNA MER2_type -1 652 2 580 224 168 0 chr12 58370056 58370217 -85912272 + MER58A DNA MER1_type 37 224 0 5560 173 13 12 chr12 58372391 58374231 -85908258 + L1PA15 LINE L1 4125 5964 -201 1399 188 57 24 chr12 58374232 58374314 -85908175 - THE1B LTR MaLR -100 326 248 2146 141 0 0 chr12 58374314 58374619 -85907870 + AluSx SINE Alu 3 307 -5 1399 188 57 24 chr12 58374619 58374852 -85907637 - THE1B LTR MaLR -178 248 1 843 98 0 0 chr12 58375018 58375130 -85907359 + THE1B LTR MaLR 253 364 0 864 154 0 0 chr12 58375701 58375844 -85906645 + L1PA15 LINE L1 6023 6165 0 2167 211 43 2 chr12 58377046 58377553 -85904936 - L1 LINE L1 -787 5359 4832 4921 156 18 14 chr12 58378127 58379058 -85903431 + L1MA6 LINE L1 5366 6300 0 393 334 45 2 chr12 58379084 58379304 -85903185 + L1MC/D LINE L1 5555 5786 -335 727 219 44 32 chr12 58379326 58379577 -85902912 - MER90-int LTR ERV1 -3156 1780 1527 665 154 0 0 chr12 58379584 58379688 -85902801 - MER8 DNA MER2_type 0 239 136 5291 213 25 52 chr12 58379755 58381122 -85901367 - MER90-int LTR ERV1 -3404 1532 203 286 216 0 40 chr12 58381137 58381211 -85901278 - MER90-int LTR ERV1 -4671 265 195 463 303 0 0 chr12 58381387 58381509 -85900980 - MER90-int LTR ERV1 -4810 126 5 2166 252 37 8 chr12 58381601 58382197 -85900292 - MER90 LTR ERV1 -1 613 1 219 306 141 0 chr12 58382242 58382327 -85900162 + L3 LINE CR1 506 602 -975 304 303 130 12 chr12 58383218 58383380 -85899109 + MIR SINE MIR 73 253 -9 342 0 0 0 chr12 58383620 58383658 -85898831 + (CA)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr12 58383664 58383687 -85898802 + AT_rich Low_complexity Low_complexity 1 23 0 301 324 0 0 chr12 58384013 58384121 -85898368 + (CAG)n Simple_repeat Simple_repeat 2 109 0 696 304 61 43 chr12 58387027 58387422 -85895067 - L2 LINE L2 0 3313 2912 9753 28 4 1 chr12 58388373 58389544 -85892945 - L1P LINE L1 -1147 4999 3825 7480 32 2 0 chr12 58389544 58390727 -85891762 + L1PA4 LINE L1 4965 6154 -1 246 193 96 133 chr12 58390729 58390864 -85891625 - LTR41 LTR ERVL -131 642 513 26 30 0 0 chr12 58391414 58391447 -85891042 + AT_rich Low_complexity Low_complexity 1 33 0 504 350 112 23 chr12 58391750 58392274 -85890215 - L1MC4a LINE L1 -381 5789 5321 22 56 0 0 chr12 58392317 58392353 -85890136 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr12 58392837 58392862 -85889627 + AT_rich Low_complexity Low_complexity 1 25 0 2175 127 3 0 chr12 58393248 58393555 -85888934 - AluSq SINE Alu -5 308 1 198 330 45 45 chr12 58393566 58393678 -85888811 + L2 LINE L2 3163 3274 -39 1960 186 45 2 chr12 58394450 58394848 -85887641 - LTR1B LTR ERV1 0 826 412 283 303 60 32 chr12 58394850 58395131 -85887358 + L1MC4 LINE L1 7565 7853 -189 1076 191 71 128 chr12 58395150 58395657 -85886832 + LTR45B LTR ERV1 12 489 0 788 267 25 45 chr12 58395706 58396044 -85886445 + MLT1G LTR MaLR 235 555 0 507 300 47 21 chr12 58396589 58396969 -85885520 + L1M4 LINE L1 3465 3854 -2292 1628 203 54 60 chr12 58396972 58397474 -85885015 - MLT1D LTR MaLR 0 505 7 356 273 135 29 chr12 58397507 58397690 -85884799 + L1M4 LINE L1 3883 4045 -2101 2002 178 3 22 chr12 58397690 58398045 -85884444 - MER7A DNA MER2_type 0 346 1 356 273 135 29 chr12 58398045 58398245 -85884244 + L1M4 LINE L1 4045 4307 -1839 * 1128 98 70 98 chr12 58398220 58398507 -85883982 + L1MA8 LINE L1 6008 6286 -5 30 0 0 0 chr12 58398509 58398539 -85883950 + AT_rich Low_complexity Low_complexity 1 30 0 283 269 163 22 chr12 58398557 58398918 -85883571 + L1M4 LINE L1 4300 4711 -1435 3262 182 42 29 chr12 58398941 58399934 -85882555 + L1MA9 LINE L1 5015 6036 -276 7913 220 30 19 chr12 58399938 58403090 -85879399 + L1MB3 LINE L1 650 2982 -3880 2383 92 0 13 chr12 58403090 58403404 -85879085 - AluY SINE Alu -1 310 1 7913 220 30 19 chr12 58403404 58405253 -85877236 + L1MB3 LINE L1 2982 4811 -2051 5703 113 0 13 chr12 58405241 58406137 -85876352 + L1PB3 LINE L1 5270 6153 -1 * 24 32 0 0 chr12 58406137 58406168 -85876321 + AT_rich Low_complexity Low_complexity 1 31 0 7100 52 0 0 chr12 58408563 58409568 -85872921 - L1PA5 LINE L1 -7 6147 5141 23 33 0 0 chr12 58409776 58409806 -85872683 + AT_rich Low_complexity Low_complexity 1 30 0 225 290 28 28 chr12 58409874 58409981 -85872508 - LTR67 LTR ERVL -85 472 366 346 297 94 0 chr12 58410209 58410337 -85872152 - LTR67 LTR ERVL -388 169 30 2333 219 12 10 chr12 58410505 58411021 -85871468 + L1ME1 LINE L1 5573 6089 -77 2340 230 93 13 chr12 58411408 58412022 -85870467 + MER76 LTR ERV 4 666 -22 236 266 55 70 chr12 58412378 58412506 -85869983 - MIR SINE MIR -58 204 79 1475 229 24 19 chr12 58414029 58414401 -85868088 - MLT1A2 LTR MaLR 0 374 1 195 42 0 0 chr12 58414417 58414441 -85868048 + (T)n Simple_repeat Simple_repeat 1 24 0 41009 31 21 1 chr12 58414443 58420469 -85862020 - L1HS LINE L1 -1 6154 4 3041 197 39 2 chr12 58421188 58422438 -85860051 + L1MB3 LINE L1 5386 6677 -222 7794 198 209 14 chr12 58422464 58424678 -85857811 + L1M2b LINE L1 1 1782 -5426 225 0 0 0 chr12 58424678 58424703 -85857786 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 7794 198 209 14 chr12 58424703 58425687 -85856802 + L1M2b LINE L1 1782 2573 -4635 1854 176 3 13 chr12 58425687 58425994 -85856495 + AluJb SINE Alu 1 304 -8 7794 198 209 14 chr12 58425994 58426053 -85856436 + L1M2b LINE L1 2573 3891 -3317 320 262 11 160 chr12 58426970 58427157 -85855332 - MIR3 SINE MIR -9 199 41 231 333 43 7 chr12 58428381 58428567 -85853922 + MIR SINE MIR 32 261 -1 181 329 151 20 chr12 58429273 58429425 -85853064 - MIR SINE MIR -5 257 86 399 257 5 48 chr12 58430066 58430253 -85852236 + GA-rich Low_complexity Low_complexity 2 180 0 204 182 0 0 chr12 58430274 58430318 -85852171 + GA-rich Low_complexity Low_complexity 4 47 0 305 283 25 48 chr12 58430353 58430651 -85851838 + GA-rich Low_complexity Low_complexity 1 291 0 465 320 0 0 chr12 58430688 58430866 -85851623 + A-rich Low_complexity Low_complexity 1 178 0 396 281 17 28 chr12 58430794 58430972 -85851517 + GA-rich Low_complexity Low_complexity 4 179 0 * 1690 197 16 25 chr12 58431507 58431872 -85850617 - MLT1A1 LTR MaLR -3 362 1 222 293 27 0 chr12 58432530 58432605 -85849884 + GA-rich Low_complexity Low_complexity 2 78 0 308 333 11 0 chr12 58432947 58433040 -85849449 + MIR3 SINE MIR 109 202 -6 5661 115 50 112 chr12 58433227 58434539 -85847950 - Tigger3b DNA MER2_type 0 1231 1 1688 148 39 20 chr12 58434758 58435063 -85847426 - AluJo SINE Alu -1 311 1 1234 238 224 23 chr12 58435364 58435690 -85846799 - L1MC4 LINE L1 -49 7993 7734 1112 159 75 5 chr12 58435690 58435904 -85846585 - L1PA15 LINE L1 0 6165 5937 1234 238 224 23 chr12 58435904 58436221 -85846268 - L1MC4 LINE L1 -308 7734 7221 2380 101 0 19 chr12 58436366 58436684 -85845805 - AluSx SINE Alu 0 312 1 225 321 263 7 chr12 58436756 58436893 -85845596 - MER91A DNA MER1_type -11 185 14 350 319 28 7 chr12 58436954 58437095 -85845394 - MIR SINE MIR -10 252 109 495 287 72 6 chr12 58438207 58438388 -85844101 + MIR SINE MIR 44 236 -26 353 345 0 0 chr12 58438561 58438671 -85843818 + MIR SINE MIR 41 150 -58 658 299 17 26 chr12 58438688 58438919 -85843570 + MIR SINE MIR 14 242 -20 235 143 0 0 chr12 58440084 58440133 -85842356 - MER57A LTR ERV1 0 403 355 718 203 0 0 chr12 58440146 58440274 -85842215 - FLAM_C SINE Alu -9 134 7 1860 198 18 18 chr12 58440283 58440678 -85841811 - MER57B LTR ERV1 -37 397 3 248 405 136 9 chr12 58440708 58441024 -85841465 - L2 LINE L2 0 3272 2917 270 215 227 76 chr12 58441435 58441607 -85840882 - L2 LINE L2 0 3272 3075 1249 205 99 52 chr12 58441611 58441869 -85840620 - MLT1C LTR MaLR 0 467 178 2285 102 0 0 chr12 58441869 58442163 -85840326 - AluSg SINE Alu -16 294 1 1249 205 99 52 chr12 58442163 58442348 -85840141 - MLT1C LTR MaLR -289 178 3 311 296 104 0 chr12 58442854 58442969 -85839520 + L2 LINE L2 3187 3313 0 294 316 34 44 chr12 58443773 58443904 -85838585 + MIR SINE MIR 20 150 -112 2192 98 14 0 chr12 58443904 58444191 -85838298 + AluY SINE Alu 1 291 -20 294 316 34 44 chr12 58444191 58444265 -85838224 + MIR SINE MIR 150 223 -39 2513 48 0 32 chr12 58444486 58444802 -85837687 + AluY SINE Alu 1 306 -5 244 319 14 0 chr12 58445537 58445606 -85836883 + L2 LINE L2 3197 3266 -6 181 338 76 7 chr12 58445678 58445823 -85836666 - L2 LINE L2 -46 3267 3113 27 49 0 0 chr12 58445921 58445962 -85836527 + AT_rich Low_complexity Low_complexity 1 41 0 2140 280 76 23 chr12 58446020 58446807 -85835682 - L2 LINE L2 -290 3023 2195 5371 97 19 2 chr12 58447156 58447952 -85834537 - L1PA10 LINE L1 0 6168 5360 600 267 58 16 chr12 58447952 58448210 -85834279 - MER110A LTR ERV1 -7 461 193 1196 183 25 30 chr12 58448263 58448369 -85834120 + AluJb SINE Alu 1 106 -206 2173 127 39 30 chr12 58448369 58448730 -85833759 + THE1B LTR MaLR 1 364 0 1196 183 25 30 chr12 58448730 58448858 -85833631 + AluJb SINE Alu 106 234 -78 259 176 50 11 chr12 58448885 58448975 -85833514 - MER110A LTR ERV1 -339 129 4 28 48 0 0 chr12 58449009 58449051 -85833438 + AT_rich Low_complexity Low_complexity 1 42 0 268 307 143 86 chr12 58449855 58450099 -85832390 + L2 LINE L2 3008 3265 -7 546 57 0 0 chr12 58451664 58451734 -85830755 + (TC)n Simple_repeat Simple_repeat 1 70 0 216 0 0 0 chr12 58451734 58451758 -85830731 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr12 58451906 58451927 -85830562 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 58451961 58451984 -85830505 + AT_rich Low_complexity Low_complexity 1 23 0 216 244 0 0 chr12 58452023 58452068 -85830421 + MIR SINE MIR 72 116 -146 * 370 158 171 0 chr12 58452063 58452139 -85830350 + L2 LINE L2 3225 3313 0 304 237 32 43 chr12 58452142 58452235 -85830254 + MIR SINE MIR 114 205 -57 516 291 51 73 chr12 58453279 58453413 -85829076 + MIR SINE MIR 34 169 -93 2103 121 51 28 chr12 58453413 58453769 -85828720 + THE1B LTR MaLR 1 364 0 10941 109 23 1 chr12 58453769 58455314 -85827175 + THE1B-int LTR MaLR 1 1580 0 1922 141 88 18 chr12 58455314 58455654 -85826835 + THE1B LTR MaLR 1 364 0 516 291 51 73 chr12 58455654 58455751 -85826738 + MIR SINE MIR 166 262 0 277 315 75 27 chr12 58456814 58456960 -85825529 + L2 LINE L2 3161 3313 0 714 295 42 29 chr12 58457103 58457344 -85825145 - MIR SINE MIR 0 262 19 371 290 77 13 chr12 58457742 58457897 -85824592 - MIR3 SINE MIR -10 198 34 196 349 61 8 chr12 58458093 58458225 -85824264 + L2 LINE L2 3111 3249 -23 292 143 0 0 chr12 58459920 58459969 -85822520 + U5 snRNA snRNA 1 49 -67 353 176 44 15 chr12 58460053 58460121 -85822368 - MIR SINE MIR -63 145 76 31 26 0 0 chr12 58461620 58461658 -85820831 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 58462804 58462825 -85819664 + AT_rich Low_complexity Low_complexity 1 21 0 943 270 5 9 chr12 58464141 58464356 -85818133 - MIR SINE MIR -39 223 10 24 0 0 0 chr12 58464581 58464605 -85817884 + AT_rich Low_complexity Low_complexity 1 24 0 225 353 71 29 chr12 58464607 58464777 -85817712 - MIR SINE MIR -81 181 5 189 107 0 0 chr12 58465187 58465215 -85817274 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 207 250 0 0 chr12 58465261 58465305 -85817184 + GA-rich Low_complexity Low_complexity 3 46 0 242 325 0 18 chr12 58465505 58465619 -85816870 + MIR SINE MIR 100 211 -51 192 77 0 0 chr12 58467743 58467769 -85814720 + (GAA)n Simple_repeat Simple_repeat 1 26 0 320 262 11 160 chr12 58468821 58469008 -85813481 + MIR3 SINE MIR 41 199 -9 26 30 0 0 chr12 58470618 58470651 -85811838 + AT_rich Low_complexity Low_complexity 1 33 0 212 211 19 0 chr12 58471602 58471654 -85810835 + (TAA)n Simple_repeat Simple_repeat 2 54 0 232 263 167 17 chr12 58471863 58472103 -85810386 - L1MC4a LINE L1 -1866 5942 5667 454 301 8 0 chr12 58472186 58472309 -85810180 - MIR SINE MIR -19 243 120 274 390 49 0 chr12 58472849 58472972 -85809517 + MIR SINE MIR 1 129 -133 478 138 11 0 chr12 58473048 58473135 -85809354 - L1MA5 LINE L1 -1 6299 6212 307 300 10 10 chr12 58473139 58473239 -85809250 + MIR SINE MIR 137 236 -26 508 276 83 28 chr12 58473320 58473581 -85808908 + MIR SINE MIR 6 262 0 214 380 11 11 chr12 58474333 58474425 -85808064 + MIR3 SINE MIR 114 205 -3 213 197 0 0 chr12 58475026 58475087 -85807402 + (TA)n Simple_repeat Simple_repeat 2 62 0 361 284 86 45 chr12 58476136 58476358 -85806131 + L2 LINE L2 2554 2784 -530 279 280 80 20 chr12 58476777 58476877 -85805612 + L2 LINE L2 3177 3282 -31 2430 81 7 0 chr12 58477144 58477452 -85805037 + AluSp SINE Alu 1 310 -3 229 292 169 39 chr12 58478246 58478400 -85804089 + MIR SINE MIR 86 259 -3 385 325 204 5 chr12 58479093 58479299 -85803190 - MIR SINE MIR 0 262 16 536 169 19 2 chr12 58479317 58479479 -85803010 + MER3 DNA MER1_type 6 209 0 278 349 14 7 chr12 58479566 58479712 -85802777 - MER117 DNA MER1_type 0 197 51 299 254 0 145 chr12 58480357 58480495 -85801994 + L2 LINE L2 2967 3084 -188 234 294 59 0 chr12 58480639 58480707 -85801782 + L2 LINE L2 3237 3308 -5 411 274 89 0 chr12 58481721 58481845 -85800644 - MIR SINE MIR -74 188 54 22 0 0 0 chr12 58481891 58481913 -85800576 + AT_rich Low_complexity Low_complexity 1 22 0 181 264 0 19 chr12 58481956 58482009 -85800480 + L3b LINE CR1 1344 1395 -188 213 39 0 0 chr12 58484001 58484027 -85798462 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 230 323 43 0 chr12 58484086 58484179 -85798310 + MLT1F1 LTR MaLR 35 131 -436 1571 192 15 12 chr12 58484184 58484522 -85797967 + L1MC3 LINE L1 7201 7539 -246 2080 170 103 7 chr12 58484538 58484986 -85797503 + L1MB5 LINE L1 5652 6142 -32 1117 177 36 4 chr12 58484995 58485243 -85797246 + L1MC3 LINE L1 7530 7785 0 274 326 11 0 chr12 58485337 58485426 -85797063 + L3b LINE CR1 1276 1365 -218 296 254 14 14 chr12 58485744 58485815 -85796674 + L2 LINE L2 3243 3313 0 1703 233 3 3 chr12 58486220 58486585 -85795904 - MLT1A1 LTR MaLR 0 365 1 1232 128 0 10 chr12 58486957 58487152 -85795337 - L1PB1 LINE L1 -2 6149 5957 351 268 104 30 chr12 58487834 58487998 -85794491 + MIR SINE MIR 67 242 -20 2120 113 3 20 chr12 58488313 58488615 -85793874 + AluSc SINE Alu 1 297 -12 1857 33 0 0 chr12 58488699 58488942 -85793547 - L1P LINE L1 -2924 3222 2980 2535 71 0 0 chr12 58488959 58489269 -85793220 + AluY SINE Alu 1 310 -1 1533 171 52 21 chr12 58490850 58491177 -85791312 - MER1B DNA MER1_type 0 337 1 279 0 0 0 chr12 58491916 58491947 -85790542 + (TG)n Simple_repeat Simple_repeat 1 31 0 186 118 0 0 chr12 58492705 58492739 -85789750 + (A)n Simple_repeat Simple_repeat 1 34 0 618 247 58 17 chr12 58493017 58493191 -85789298 + MIR SINE MIR 25 205 -57 221 348 11 43 chr12 58493284 58493376 -85789113 - MIR SINE MIR -61 147 68 946 76 14 14 chr12 58493602 58493747 -85788742 + (TTTC)n Simple_repeat Simple_repeat 4 148 0 2309 54 0 4 chr12 58493747 58494025 -85788464 - AluY SINE Alu -34 277 1 217 259 86 0 chr12 58494232 58494290 -85788199 - MIR SINE MIR -119 89 27 2343 73 0 7 chr12 58495414 58495715 -85786774 + AluY SINE Alu 1 299 -12 330 313 0 82 chr12 58496198 58496345 -85786144 + L2 LINE L2 3106 3240 -32 289 297 0 0 chr12 58496509 58496573 -85785916 + L2 LINE L2 3249 3312 -1 1557 182 19 67 chr12 58496673 58497103 -85785386 - MER67C LTR ERV1 -11 503 174 3486 85 22 0 chr12 58497103 58497595 -85784894 - L1PA13 LINE L1 0 6163 5661 1557 182 19 67 chr12 58497595 58497762 -85784727 - MER67C LTR ERV1 -340 174 1 266 354 97 0 chr12 58498150 58498263 -85784226 - MIR3 SINE MIR -48 160 37 206 263 0 0 chr12 58499320 58499358 -85783131 - MER5A DNA MER1_type 0 189 152 327 25 0 0 chr12 58499466 58499506 -85782983 + (TG)n Simple_repeat Simple_repeat 1 40 0 195 100 0 0 chr12 58499989 58500019 -85782470 + (TAA)n Simple_repeat Simple_repeat 2 31 0 303 304 118 53 chr12 58500083 58500422 -85782067 - MLT1J LTR MaLR -38 473 113 1321 271 46 42 chr12 58501548 58502006 -85780483 - LTR16B LTR ERVL -4 460 1 330 300 17 8 chr12 58502018 58502138 -85780351 + MIR3 SINE MIR 81 201 -7 507 258 24 0 chr12 58503631 58503755 -85778734 + MIR SINE MIR 58 184 -78 26 64 0 0 chr12 58503795 58503842 -85778647 + AT_rich Low_complexity Low_complexity 1 47 0 520 62 0 0 chr12 58503908 58503973 -85778516 + Alu SINE Alu 228 292 -17 239 235 52 106 chr12 58505632 58505802 -85776687 + MIR3 SINE MIR 19 155 -53 261 0 0 0 chr12 58506379 58506408 -85776081 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr12 58507767 58507791 -85774698 + AT_rich Low_complexity Low_complexity 1 24 0 351 182 0 0 chr12 58508585 58508662 -85773827 + (TA)n Simple_repeat Simple_repeat 2 78 0 2156 119 3 7 chr12 58509979 58510281 -85772208 - AluSx SINE Alu -11 301 1 25 0 0 0 chr12 58510492 58510517 -85771972 + AT_rich Low_complexity Low_complexity 1 25 0 196 326 148 15 chr12 58510603 58510738 -85771751 - MIR SINE MIR -75 187 35 484 278 115 43 chr12 58511238 58511472 -85771017 - MIR SINE MIR -10 252 2 948 177 45 15 chr12 58511514 58511712 -85770777 - MER3 DNA MER1_type 0 209 6 351 346 11 45 chr12 58511739 58511918 -85770571 + MIR SINE MIR 4 176 -86 1133 201 42 90 chr12 58512229 58512608 -85769881 - MLT1A1 LTR MaLR -4 361 1 379 163 184 51 chr12 58512758 58512856 -85769633 - MER81 DNA DNA 0 114 4 1767 187 97 41 chr12 58513121 58513812 -85768677 - LTR28 LTR ERV1 0 1020 109 415 148 34 21 chr12 58513813 58513971 -85768518 - LTR28 LTR ERV1 -286 749 1 327 324 46 9 chr12 58514107 58514215 -85768274 + MIR SINE MIR 20 131 -77 585 216 80 65 chr12 58514505 58514857 -85767632 - L1M4 LINE L1 -1634 4512 4156 455 300 22 88 chr12 58514886 58514956 -85767533 - MIR SINE MIR -2 260 187 2086 116 0 3 chr12 58514956 58515279 -85767210 - AluSx SINE Alu 0 322 1 455 300 22 88 chr12 58515279 58515434 -85767055 - MIR SINE MIR -75 187 49 5283 107 1 0 chr12 58516627 58517372 -85765117 - L1PA10 LINE L1 -4 6164 5419 25 90 0 0 chr12 58517467 58517534 -85764955 + AT_rich Low_complexity Low_complexity 1 67 0 549 65 22 22 chr12 58517727 58517819 -85764670 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 196 0 27 81 chr12 58518784 58518821 -85763668 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 674 154 8 0 chr12 58519437 58519554 -85762935 - MER1B DNA MER1_type 0 339 222 346 192 0 14 chr12 58519552 58519625 -85762864 - MER1B DNA MER1_type -249 88 17 * 188 221 182 26 chr12 58519914 58519991 -85762498 - L3 LINE CR1 -829 748 660 2169 101 0 16 chr12 58520127 58520433 -85762056 - AluSg SINE Alu 0 310 10 595 134 0 0 chr12 58520433 58520515 -85761974 - AluS SINE Alu -230 82 1 285 109 0 0 chr12 58521367 58521413 -85761076 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 202 340 113 0 chr12 58521469 58521575 -85760914 - L3 LINE CR1 -972 605 488 1301 191 17 51 chr12 58522018 58522369 -85760120 - MLT1A1 LTR MaLR -3 362 24 428 111 0 0 chr12 58522575 58522638 -85759851 - AluS SINE Alu -255 63 1 496 301 20 46 chr12 58522640 58522793 -85759696 - MIR SINE MIR -65 197 49 6168 94 16 0 chr12 58523985 58525301 -85757188 - L1PA10 LINE L1 -4 6164 4835 1081 160 5 0 chr12 58525301 58525514 -85756975 - L1PA10 LINE L1 -3051 3095 2882 8538 193 13 9 chr12 58526656 58529182 -85753307 + L1P3 LINE L1 3282 5820 -352 387 0 0 0 chr12 58529489 58529532 -85752957 + (TG)n Simple_repeat Simple_repeat 2 44 0 40417 35 23 4 chr12 58529855 58535894 -85746595 - L1PA3 LINE L1 0 6155 1 270 0 0 0 chr12 58535977 58536007 -85746482 + (TG)n Simple_repeat Simple_repeat 2 31 0 2296 82 7 3 chr12 58537062 58537356 -85745133 + AluSg SINE Alu 1 295 -15 367 260 63 99 chr12 58537860 58538083 -85744406 + L3 LINE CR1 1191 1405 -172 1257 97 96 0 chr12 58539352 58539669 -85742820 + L1PA5 LINE L1 5872 6238 0 2143 102 0 13 chr12 58539810 58540124 -85742365 - AluY SINE Alu -1 310 1 24 0 0 0 chr12 58540820 58540844 -85741645 + AT_rich Low_complexity Low_complexity 1 24 0 49 18 0 0 chr12 58542793 58542849 -85739640 + AT_rich Low_complexity Low_complexity 1 56 0 2305 41 0 0 chr12 58543633 58543961 -85738528 + L1PA4 LINE L1 5840 6167 0 5405 69 45 20 chr12 58544126 58544934 -85737555 + MER61-int LTR ERV1 1992 2819 -2398 2067 95 101 21 chr12 58545071 58545408 -85737081 - THE1B LTR MaLR 0 364 1 1873 155 34 81 chr12 58546446 58547015 -85735474 - MLT2A2 LTR ERVL 0 554 1 1742 249 48 40 chr12 58550656 58550785 -85731704 + L1MC4 LINE L1 6459 6585 -1457 2093 134 131 8 chr12 58550785 58551166 -85731323 - MSTA LTR MaLR 0 428 1 1742 249 48 40 chr12 58551166 58551654 -85730835 + L1MC4 LINE L1 6585 7081 -961 1413 260 103 25 chr12 58551670 58552263 -85730226 + L1MC4 LINE L1 7254 7892 -150 42689 34 22 1 chr12 58552281 58558321 -85724168 + L1PA3 LINE L1 1 6171 0 31 58 0 0 chr12 58558414 58558466 -85724023 + AT_rich Low_complexity Low_complexity 1 52 0 25 90 0 0 chr12 58558887 58558954 -85723535 + AT_rich Low_complexity Low_complexity 1 67 0 27 49 0 0 chr12 58559042 58559083 -85723406 + AT_rich Low_complexity Low_complexity 1 41 0 195 42 0 0 chr12 58559200 58559224 -85723265 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2331 80 0 3 chr12 58559674 58559976 -85722513 - AluSc SINE Alu -8 301 1 25 0 0 0 chr12 58562172 58562197 -85720292 + AT_rich Low_complexity Low_complexity 1 25 0 40867 39 1 1 chr12 58562311 58567264 -85715225 + L1P LINE L1 5 4954 -1192 440 116 21 42 chr12 58567371 58567466 -85715023 + L1PA4 LINE L1 6049 6141 -14 307 294 159 10 chr12 58567751 58567952 -85714537 - L1MC4 LINE L1 -213 7829 7599 21 0 0 0 chr12 58568251 58568272 -85714217 + AT_rich Low_complexity Low_complexity 1 21 0 42726 32 22 1 chr12 58568272 58574296 -85708193 - L1HS LINE L1 -1 6154 1 1413 260 103 25 chr12 58574314 58574907 -85707582 - L1MC4 LINE L1 -150 7892 7254 1742 249 48 40 chr12 58574923 58575411 -85707078 - L1MC4 LINE L1 -961 7081 6585 2093 134 131 8 chr12 58575411 58575792 -85706697 + MSTA LTR MaLR 1 428 0 1742 249 48 40 chr12 58575792 58575921 -85706568 - L1MC4 LINE L1 -1457 6585 6459 1873 155 34 81 chr12 58579560 58580129 -85702360 + MLT2A2 LTR ERVL 1 554 0 2067 95 101 21 chr12 58581167 58581504 -85700985 + THE1B LTR MaLR 1 364 0 5405 69 45 20 chr12 58581641 58582449 -85700040 - MER61-int LTR ERV1 -2398 2819 1992 221 56 0 28 chr12 58582614 58582650 -85699839 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 4557 23 0 0 chr12 58582650 58583171 -85699318 - L1PA3 LINE L1 -24 6131 5611 441 277 141 78 chr12 58583389 58583750 -85698739 + MLT1H LTR MaLR 20 403 -146 21 36 0 0 chr12 58583816 58583844 -85698645 + AT_rich Low_complexity Low_complexity 1 28 0 2148 115 3 10 chr12 58586352 58586657 -85695832 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr12 58586724 58586745 -85695744 + AT_rich Low_complexity Low_complexity 1 21 0 839 101 78 0 chr12 58588801 58588930 -85693559 + L1PA11 LINE L1 6032 6170 -4 2503 61 0 3 chr12 58588978 58589290 -85693199 - AluY SINE Alu 0 311 1 22 0 0 0 chr12 58589769 58589791 -85692698 + AT_rich Low_complexity Low_complexity 1 22 0 997 197 101 0 chr12 58590281 58590499 -85691990 + L1MC/D LINE L1 5451 5690 -2095 * 2406 133 16 0 chr12 58590497 58590882 -85691607 - L1PB4 LINE L1 -242 5914 5524 2074 90 3 19 chr12 58590882 58591194 -85691295 - L1P3 LINE L1 -4816 1645 1339 6874 63 6 0 chr12 58591595 58592488 -85690001 + L1PA7 LINE L1 5254 6151 -3 192 291 0 13 chr12 58592536 58592615 -85689874 + MIR SINE MIR 172 249 -13 2080 164 36 42 chr12 58592679 58593234 -85689255 - MLT2A2 LTR ERVL 0 554 1 1872 145 49 25 chr12 58594035 58594401 -85688088 - THE1C LTR MaLR 0 375 1 273 57 0 0 chr12 58594411 58594446 -85688043 + (TG)n Simple_repeat Simple_repeat 2 36 0 867 183 30 52 chr12 58594448 58594678 -85687811 - L1 LINE L1 -2128 4018 3794 211 106 21 43 chr12 58595274 58595321 -85687168 + (TA)n Simple_repeat Simple_repeat 2 47 0 3256 133 138 51 chr12 58596549 58597062 -85685427 + LTR12 LTR ERV1 1 530 -184 3229 63 5 5 chr12 58597062 58597488 -85685001 - L1PA5 LINE L1 -2 6152 5727 3256 133 138 51 chr12 58597488 58597691 -85684798 + LTR12 LTR ERV1 530 714 0 24 77 0 0 chr12 58599066 58599118 -85683371 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr12 58599268 58599298 -85683191 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr12 58599380 58599410 -85683079 + AT_rich Low_complexity Low_complexity 1 30 0 566 301 75 29 chr12 58599806 58600045 -85682444 - MIR SINE MIR 0 262 13 952 249 46 0 chr12 58600431 58600672 -85681817 + MIR SINE MIR 11 262 0 1454 79 25 0 chr12 58600924 58601127 -85681362 + L1PA13 LINE L1 5948 6155 -8 24 32 0 0 chr12 58601711 58601742 -85680747 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr12 58603191 58603226 -85679263 + AT_rich Low_complexity Low_complexity 1 35 0 1162 281 43 17 chr12 58604057 58604272 -85678217 + L1M4 LINE L1 3949 4157 -1989 1886 183 10 47 chr12 58604272 58604677 -85677812 + MLT1B LTR MaLR 1 390 0 1162 281 43 17 chr12 58604677 58604877 -85677612 + L1M4 LINE L1 4157 4375 -1771 816 326 55 20 chr12 58604888 58605290 -85677199 + L1M3c LINE L1 175 590 -5723 2527 242 70 49 chr12 58605665 58606785 -85675704 + L1M3c LINE L1 911 2212 -4171 289 283 66 33 chr12 58606835 58607047 -85675442 + L1M4c LINE L1 1964 2182 -4202 16531 215 18 18 chr12 58607918 58608888 -85673601 + L1P4 LINE L1 1534 2503 -4313 6263 92 11 34 chr12 58608888 58610072 -85672417 - L1PA13 LINE L1 -8 6155 4976 16531 215 18 18 chr12 58610072 58610542 -85671947 + L1P4 LINE L1 2503 2972 -3844 213 39 0 0 chr12 58610542 58610568 -85671921 + (CAA)n Simple_repeat Simple_repeat 2 27 0 16531 215 18 18 chr12 58610568 58613854 -85668635 + L1P4 LINE L1 2972 6280 -536 233 132 0 0 chr12 58614356 58614394 -85668095 + L1P LINE L1 3895 3932 -2214 488 273 12 6 chr12 58615128 58615293 -85667196 - L1M4 LINE L1 -2214 3932 3767 1835 162 30 0 chr12 58616599 58616949 -85665540 - AluSx SINE Alu 0 359 1 32 98 0 0 chr12 58617082 58617184 -85665305 + AT_rich Low_complexity Low_complexity 1 102 0 330 191 71 36 chr12 58617206 58617290 -85665199 - MLT2B1 LTR ERVL 0 520 434 1620 218 69 77 chr12 58617608 58618260 -85664229 - L1MC4 LINE L1 -285 7757 7111 1680 236 65 50 chr12 58618316 58618531 -85663958 - L1M4 LINE L1 -2029 4117 3907 2287 96 0 10 chr12 58618531 58618844 -85663645 - AluSq SINE Alu 0 313 4 1680 236 65 50 chr12 58618844 58619264 -85663225 - L1M4 LINE L1 -2239 3907 3473 187 203 31 0 chr12 58619372 58619436 -85663053 + (TA)n Simple_repeat Simple_repeat 2 67 0 201 260 0 0 chr12 58619474 58619551 -85662938 + GA-rich Low_complexity Low_complexity 2 78 0 328 191 16 0 chr12 58619569 58619632 -85662857 - L1MEc LINE L1 -6298 98 35 240 111 0 0 chr12 58619726 58619771 -85662718 + (TTA)n Simple_repeat Simple_repeat 1 45 0 934 134 0 0 chr12 58619825 58619959 -85662530 + AluSq/x SINE Alu 1 134 -178 1835 144 3 3 chr12 58619960 58620245 -85662244 + AluSx SINE Alu 1 285 -27 390 21 0 0 chr12 58620245 58620292 -85662197 + (CA)n Simple_repeat Simple_repeat 2 48 0 40 49 0 0 chr12 58621531 58621592 -85660897 + AT_rich Low_complexity Low_complexity 1 61 0 218 200 0 0 chr12 58622481 58622521 -85659968 + MER5A DNA MER1_type 140 179 -10 531 0 0 0 chr12 58622581 58622640 -85659849 + (TA)n Simple_repeat Simple_repeat 1 59 0 561 282 24 47 chr12 58623128 58623341 -85659148 - MIR SINE MIR -7 255 48 41869 37 25 5 chr12 58623466 58629494 -85652995 - L1PA4 LINE L1 0 6155 1 270 0 0 0 chr12 58629577 58629607 -85652882 + (TG)n Simple_repeat Simple_repeat 2 31 0 2286 82 7 3 chr12 58630662 58630956 -85651533 + AluSg SINE Alu 1 295 -15 374 260 63 99 chr12 58631460 58631683 -85650806 + L3 LINE CR1 1191 1405 -172 1319 87 54 0 chr12 58632952 58633187 -85649302 + L1PA5 LINE L1 5872 6155 0 23 0 0 0 chr12 58633220 58633243 -85649246 + AT_rich Low_complexity Low_complexity 1 23 0 2072 96 0 16 chr12 58633413 58633716 -85648773 - AluY SINE Alu -1 310 13 598 221 18 35 chr12 58633716 58633902 -85648587 - L1M4 LINE L1 -675 5499 5324 1756 208 34 5 chr12 58634092 58634530 -85647959 - L1P LINE L1 -5691 455 5 25 0 0 0 chr12 58634644 58634669 -85647820 + AT_rich Low_complexity Low_complexity 1 25 0 2331 80 0 3 chr12 58636865 58637167 -85645322 + AluSc SINE Alu 1 301 -8 195 42 0 0 chr12 58637617 58637641 -85644848 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 27 49 0 0 chr12 58637758 58637799 -85644690 + AT_rich Low_complexity Low_complexity 1 41 0 25 90 0 0 chr12 58637887 58637954 -85644535 + AT_rich Low_complexity Low_complexity 1 67 0 31 58 0 0 chr12 58638375 58638427 -85644062 + AT_rich Low_complexity Low_complexity 1 52 0 221 0 35 0 chr12 58638519 58638548 -85643941 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 42230 39 23 0 chr12 58638550 58644548 -85637941 - L1PA3 LINE L1 -15 6140 1 617 273 135 25 chr12 58644834 58645017 -85637472 + L1ME3A LINE L1 3892 4054 -2092 2444 69 0 3 chr12 58645017 58645320 -85637169 + AluY SINE Alu 1 302 -9 617 273 135 25 chr12 58645320 58645465 -85637024 + L1ME3A LINE L1 4054 4182 -1964 1385 127 14 0 chr12 58645465 58645686 -85636803 + L1PA15 LINE L1 5938 6161 -4 617 273 135 25 chr12 58645686 58645876 -85636613 + L1ME3A LINE L1 4182 4468 -1678 2001 148 3 0 chr12 58645896 58646194 -85636295 - AluSx SINE Alu -13 299 1 288 289 10 10 chr12 58646471 58646575 -85635914 + L1ME3A LINE L1 5410 5513 -651 313 189 27 40 chr12 58646582 58646656 -85635833 + MER106B DNA MER1_type 1 73 -986 23 54 0 0 chr12 58646684 58646721 -85635768 + AT_rich Low_complexity Low_complexity 1 37 0 492 274 85 52 chr12 58646928 58647256 -85635233 + L1ME3A LINE L1 5579 5917 -253 2032 181 33 7 chr12 58647266 58647685 -85634804 - L1MC3 LINE L1 -173 7612 7183 293 286 13 0 chr12 58647690 58647767 -85634722 - MLT1F1 LTR MaLR -453 114 37 237 271 6 59 chr12 58648128 58648298 -85634191 + T-rich Low_complexity Low_complexity 4 164 0 516 263 97 13 chr12 58648358 58648705 -85633784 - L1M LINE L1 -743 5403 5050 2593 84 5 24 chr12 58648708 58649078 -85633411 + THE1B LTR MaLR 1 363 -1 1912 93 11 0 chr12 58649079 58649348 -85633141 + THE1B-int LTR MaLR 1 272 -1308 274 190 17 0 chr12 58649391 58649449 -85633040 - L1M4 LINE L1 -1198 4948 4890 497 249 46 20 chr12 58649487 58649684 -85632805 - L1M4 LINE L1 -1334 4812 4611 2170 158 51 20 chr12 58649689 58650081 -85632408 + MER61C LTR ERV1 22 425 -9 502 247 6 76 chr12 58650092 58650250 -85632239 + MER61C-int LTR ERV1 2 148 -5069 559 161 0 97 chr12 58650495 58650650 -85631839 + MER61C-int LTR ERV1 315 454 -4763 * 955 206 18 22 chr12 58650633 58650707 -85631782 + MER61C-int LTR ERV1 676 749 -4468 304 237 13 0 chr12 58650707 58650783 -85631706 + MADE1 DNA Mariner 4 80 0 955 206 18 22 chr12 58650783 58651038 -85631451 + MER61C-int LTR ERV1 749 4162 -1055 2565 216 26 2 chr12 58651040 58651681 -85630808 - L1MC/D LINE L1 -519 6050 5396 440 320 105 10 chr12 58652312 58652512 -85629977 + HAL1 LINE L1 385 603 -1904 * 713 225 80 16 chr12 58652496 58652780 -85629709 - L1MC/D LINE L1 -3633 2749 2442 1828 131 102 44 chr12 58653006 58653350 -85629139 - THE1B LTR MaLR 0 364 1 637 168 46 62 chr12 58653545 58653720 -85628769 + LTR45 LTR ERV1 331 517 -8 4175 179 106 34 chr12 58653745 58654832 -85627657 - L1MC/D LINE L1 -3940 2444 1280 6533 190 24 25 chr12 58654969 58656363 -85626126 - L1MC/D LINE L1 -4969 1415 24 529 252 77 46 chr12 58656371 58656915 -85625574 - L1M4 LINE L1 -2697 3449 2889 693 314 28 30 chr12 58656928 58657323 -85625166 - L1M4 LINE L1 -3328 2818 2425 373 217 0 0 chr12 58657337 58657406 -85625083 + MER54B LTR ERVL 614 682 -111 985 142 13 0 chr12 58657455 58657610 -85624879 + MER54A LTR ERVL 745 901 0 1080 287 85 9 chr12 58657617 58658042 -85624447 - L1MC4 LINE L1 -191 7851 7395 412 242 83 0 chr12 58658163 58658283 -85624206 - L1MC4 LINE L1 -972 7070 6941 253 219 0 0 chr12 58658298 58658362 -85624127 + (TAAA)n Simple_repeat Simple_repeat 4 67 0 21 57 0 0 chr12 58658420 58658455 -85624034 + AT_rich Low_complexity Low_complexity 1 35 0 4571 160 0 0 chr12 58658455 58659229 -85623260 - L1PA10 LINE L1 -1013 5133 4360 6594 83 4 7 chr12 58659232 58660236 -85622253 + L1PA10 LINE L1 5158 6159 -9 26 64 0 0 chr12 58660501 58660548 -85621941 + AT_rich Low_complexity Low_complexity 1 47 0 201 293 0 12 chr12 58660667 58660749 -85621740 + T-rich Low_complexity Low_complexity 2 82 0 1700 104 0 0 chr12 58661253 58661493 -85620996 + L1PB1 LINE L1 5911 6150 -1 607 190 16 0 chr12 58661516 58661637 -85620852 + L1PA15 LINE L1 6024 6146 -19 1719 108 85 0 chr12 58661641 58661920 -85620569 - AluSx SINE Alu 0 301 1 267 31 0 0 chr12 58663178 58663210 -85619279 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr12 58664360 58664382 -85618107 + AT_rich Low_complexity Low_complexity 1 22 0 579 361 75 19 chr12 58664875 58665290 -85617199 - L3 LINE CR1 -72 1505 1068 1115 93 43 0 chr12 58665707 58665869 -85616620 + L1PA11 LINE L1 5941 6109 -65 31 0 0 0 chr12 58666008 58666039 -85616450 + AT_rich Low_complexity Low_complexity 1 31 0 401 109 0 0 chr12 58666233 58666297 -85616192 + L1PA11 LINE L1 6111 6174 0 34 0 0 0 chr12 58667064 58667098 -85615391 + AT_rich Low_complexity Low_complexity 1 34 0 742 191 7 40 chr12 58667845 58667997 -85614492 - FRAM SINE Alu -13 163 17 6249 83 9 4 chr12 58668101 58669410 -85613079 - L1PA12 LINE L1 -11 6157 4842 211 200 67 0 chr12 58670701 58670746 -85611743 + L2 LINE L2 3225 3272 0 307 23 0 23 chr12 58673453 58673496 -85608993 + MADE1 DNA Mariner 1 42 -38 581 323 35 63 chr12 58674055 58674426 -85608063 - L2 LINE L2 -1281 2033 1672 2154 111 10 3 chr12 58674426 58674733 -85607756 - AluSx SINE Alu -3 309 1 581 323 35 63 chr12 58674733 58674757 -85607732 - L2 LINE L2 -1642 1672 1649 424 340 37 42 chr12 58675044 58675259 -85607230 - MIR SINE MIR -1 261 48 1085 264 67 3 chr12 58675365 58675694 -85606795 + MLT1-int LTR MaLR 229 578 -793 698 307 61 32 chr12 58675903 58676511 -85605978 + L1MA5 LINE L1 2 933 -5720 2189 134 132 5 chr12 58676511 58676891 -85605598 + MSTA LTR MaLR 1 428 0 698 307 61 32 chr12 58676891 58677010 -85605479 + L1MA5 LINE L1 933 1047 -5606 2739 300 12 6 chr12 58677114 58677840 -85604649 + L1MA3 LINE L1 423 1153 -5500 10199 163 25 14 chr12 58677948 58681013 -85601476 + L1MA3 LINE L1 3791 6891 0 12061 187 43 30 chr12 58681023 58681257 -85601232 + L1MA5 LINE L1 3118 3347 -3573 2226 85 0 7 chr12 58681257 58681552 -85600937 + AluSg1 SINE Alu 1 293 -16 12061 187 43 30 chr12 58681552 58684603 -85597886 + L1MA5 LINE L1 3347 6477 -443 434 104 15 0 chr12 58684603 58684715 -85597774 - AluSg/x SINE Alu 0 327 215 12061 187 43 30 chr12 58684715 58685129 -85597360 + L1MA5 LINE L1 6477 6884 -36 25 31 0 0 chr12 58685571 58685603 -85596886 + AT_rich Low_complexity Low_complexity 1 32 0 5033 66 0 0 chr12 58686346 58686982 -85595507 - L1PA5 LINE L1 -4 6150 5515 14193 68 1 4 chr12 58686991 58688832 -85593657 + L1PA3 LINE L1 11 1844 -4302 19211 37 0 0 chr12 58688832 58691950 -85590539 + L1PA3 LINE L1 3035 6152 -3 1760 58 0 0 chr12 58691999 58692222 -85590267 - L1PA5 LINE L1 -623 5531 5309 385 109 16 0 chr12 58692564 58692628 -85589861 - L1PA16 LINE L1 -9 6157 6093 2922 34 0 0 chr12 58692909 58693261 -85589228 - L1PA2 LINE L1 0 6155 5804 2103 104 14 3 chr12 58693281 58693597 -85588892 + AluSx SINE Alu 1 312 0 34 79 0 0 chr12 58694238 58694314 -85588175 + AT_rich Low_complexity Low_complexity 1 76 0 189 0 0 0 chr12 58697067 58697088 -85585401 + (TG)n Simple_repeat Simple_repeat 2 22 0 640 269 112 24 chr12 58698647 58699057 -85583432 - LTR33 LTR ERVL 0 521 36 184 284 88 10 chr12 58699433 58699535 -85582954 - MIR SINE MIR -80 182 73 293 140 55 24 chr12 58700192 58700293 -85582196 - L1MA9 LINE L1 -12 6279 6180 * 511 193 8 17 chr12 58700276 58700395 -85582094 - L1MA8 LINE L1 -32 6259 6142 1441 237 31 45 chr12 58700750 58701168 -85581321 + MLT1C LTR MaLR 1 412 -55 210 37 0 0 chr12 58701168 58701195 -85581294 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 188 83 0 28 chr12 58701214 58701250 -85581239 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6247 23 3 0 chr12 58701250 58701977 -85580512 - L1PA3 LINE L1 -24 6131 5403 * 10125 22 0 0 chr12 58701972 58703173 -85579316 + L1PA3 LINE L1 4203 5403 -743 962 288 27 17 chr12 58703267 58703566 -85578923 + MLT1H LTR MaLR 52 353 -196 230 279 0 0 chr12 58703645 58703713 -85578776 + MLT1H LTR MaLR 480 547 -2 1162 95 185 0 chr12 58704233 58704455 -85578034 - L1MA8 LINE L1 -2 6289 6027 258 246 15 0 chr12 58705247 58705312 -85577177 - MIR SINE MIR -93 169 104 1342 138 9 14 chr12 58706510 58706728 -85575761 + Tigger4(Zombi) DNA MER2_type 2513 2729 -2 312 297 97 6 chr12 58706905 58707070 -85575419 + HAL1 LINE L1 18 197 -2310 809 321 144 20 chr12 58707230 58708031 -85574458 + HAL1 LINE L1 406 1305 -1202 4885 208 38 15 chr12 58708068 58708832 -85573657 + L1MC1 LINE L1 4130 4875 -1458 1856 183 16 19 chr12 58708832 58709198 -85573291 - MLT1A1 LTR MaLR 0 365 1 4885 208 38 15 chr12 58709198 58710474 -85572015 + L1MC1 LINE L1 4875 6221 -112 28 48 0 0 chr12 58710643 58710685 -85571804 + AT_rich Low_complexity Low_complexity 1 42 0 1265 125 22 97 chr12 58811842 58812059 -85470430 - AluJo SINE Alu -22 290 101 2386 64 0 16 chr12 58812059 58812373 -85470116 - AluY SINE Alu -1 310 2 1265 125 22 97 chr12 58812373 58812466 -85470023 - AluJo SINE Alu -211 101 3 232 273 25 8 chr12 58813472 58813593 -85468896 + (TA)n Simple_repeat Simple_repeat 2 124 0 21 36 0 0 chr12 58813600 58813628 -85468861 + AT_rich Low_complexity Low_complexity 1 28 0 2146 136 64 42 chr12 58813667 58814033 -85468456 - L1MC3 LINE L1 -2 7783 7404 2400 66 0 3 chr12 58814033 58814335 -85468154 - AluY SINE Alu -10 301 1 2146 136 64 42 chr12 58814335 58814418 -85468071 - L1MC3 LINE L1 -381 7404 7324 242 73 24 0 chr12 58814410 58814451 -85468038 + THE1C-int LTR MaLR 1539 1580 0 * 1378 58 29 0 chr12 58814451 58814624 -85467865 + THE1C LTR MaLR 1 178 -197 374 192 0 26 chr12 58814625 58814703 -85467786 - L1MC3 LINE L1 -510 7275 7200 226 265 44 15 chr12 58814714 58814782 -85467707 - MLT1F1 LTR MaLR -457 110 41 214 177 48 0 chr12 58814797 58814859 -85467630 + (TA)n Simple_repeat Simple_repeat 1 65 0 2333 119 41 11 chr12 58815018 58815380 -85467109 - THE1C LTR MaLR 0 375 3 8994 102 55 10 chr12 58815382 58816682 -85465807 - THE1C-int LTR MaLR 0 1580 223 2679 90 16 24 chr12 58816682 58817048 -85465441 - THE1C LTR MaLR 0 375 11 5305 60 17 0 chr12 58817048 58817697 -85464792 + PABL_A LTR ERV1 1 660 0 2679 90 16 24 chr12 58817697 58817708 -85464781 - THE1C LTR MaLR -364 11 1 1735 75 0 4 chr12 58817708 58817936 -85464553 - THE1C-int LTR MaLR -1353 227 1 2716 87 27 8 chr12 58817936 58818304 -85464185 - THE1C LTR MaLR 0 375 1 9503 67 10 60 chr12 58818599 58820041 -85462448 + SVA Other Other 18 1386 0 827 188 58 0 chr12 58820050 58820204 -85462285 + FRAM SINE Alu 1 156 -20 354 113 0 0 chr12 58821626 58821679 -85460810 + L1 LINE L1 5227 5279 -867 945 69 0 41 chr12 58821679 58821824 -85460665 + AluY SINE Alu 173 311 0 2010 93 3 28 chr12 58821825 58822116 -85460373 + L1P4 LINE L1 5303 5586 -577 466 310 33 16 chr12 58822400 58822584 -85459905 + MIR SINE MIR 2 188 -74 567 220 110 44 chr12 58822602 58822784 -85459705 + L2 LINE L2 3120 3313 0 198 227 40 53 chr12 58822779 58822854 -85459635 + MIR SINE MIR 185 258 -4 * 335 346 72 0 chr12 58823357 58823510 -85458979 - LTR67 LTR ERVL -269 288 125 1530 180 3 21 chr12 58823684 58823967 -85458522 + AluJo SINE Alu 1 278 -34 278 303 10 0 chr12 58824020 58824119 -85458370 - ERVL LTR ERVL -2210 3554 3455 409 289 164 19 chr12 58824160 58824423 -85458066 - ERVL LTR ERVL -2282 3372 3072 455 322 55 40 chr12 58824639 58824912 -85457577 - ERVL LTR ERVL -2943 2821 2545 523 222 111 16 chr12 58825069 58825195 -85457294 + MIR SINE MIR 18 155 -107 805 279 13 17 chr12 58825208 58825441 -85457048 + MER69 DNA AcHobo 17 248 -978 276 270 0 14 chr12 58825430 58825504 -85456985 + MER69 DNA AcHobo 2453 2525 -1 * 226 292 0 14 chr12 58825504 58825576 -85456913 + MIR SINE MIR 165 235 -27 301 313 0 30 chr12 58825762 58825861 -85456628 + LTR67 LTR ERVL 4 99 -458 333 276 29 9 chr12 58826078 58826183 -85456306 + LTR67 LTR ERVL 448 554 -3 284 344 11 0 chr12 58826194 58826287 -85456202 + L2 LINE L2 2633 2726 -588 180 250 42 0 chr12 58826324 58826372 -85456117 - L3b LINE CR1 -255 1328 1279 26 30 0 0 chr12 58826682 58826715 -85455774 + AT_rich Low_complexity Low_complexity 1 33 0 821 154 0 0 chr12 58826721 58826838 -85455651 - FLAM_C SINE Alu -25 118 2 625 107 0 10 chr12 58826844 58826947 -85455542 - L1MA6 LINE L1 -6 6294 6193 248 119 0 48 chr12 58826979 58827021 -85455468 + MER49 LTR ERV1 67 106 -817 5020 153 2 20 chr12 58827104 58827895 -85454594 + MER49 LTR ERV1 102 880 -43 1821 131 6 62 chr12 58827895 58828215 -85454274 + AluJb SINE Alu 2 303 -9 5020 153 2 20 chr12 58828215 58828235 -85454254 + MER49 LTR ERV1 880 899 -24 1403 139 16 20 chr12 58828235 58828487 -85454002 - L1MA6 LINE L1 -110 6190 5940 1584 102 53 12 chr12 58828506 58828752 -85453737 + AluSq SINE Alu 58 313 0 390 295 23 15 chr12 58831017 58831152 -85451337 - MIR SINE MIR -85 123 11 417 341 40 20 chr12 58831669 58831966 -85450523 - L3 LINE CR1 -8 1569 1230 986 276 0 16 chr12 58832071 58832328 -85450161 - MIR SINE MIR -8 254 2 330 26 0 0 chr12 58832350 58832389 -85450100 + (A)n Simple_repeat Simple_repeat 1 39 0 2457 69 0 0 chr12 58832393 58832698 -85449791 + AluY SINE Alu 1 305 -6 201 345 0 0 chr12 58832720 58832775 -85449714 + L2 LINE L2 3217 3271 -1 234 356 23 0 chr12 58832778 58832865 -85449624 - MIR SINE MIR -115 147 59 325 340 80 0 chr12 58833094 58833244 -85449245 - MIR SINE MIR -44 218 57 468 340 79 47 chr12 58833640 58833981 -85448508 - L1ME4a LINE L1 -201 5920 5569 992 118 12 35 chr12 58834056 58834225 -85448264 - L1PB3 LINE L1 -9 6145 5981 864 123 105 0 chr12 58834594 58834756 -85447733 - L1MB2 LINE L1 -2 6169 5991 751 209 170 0 chr12 58836661 58836867 -85445622 + L2 LINE L2 1787 2027 -1287 602 318 162 34 chr12 58836911 58837280 -85445209 + L2 LINE L2 2297 2740 -574 2046 136 0 0 chr12 58837280 58837590 -85444899 - AluSx SINE Alu -2 310 1 602 318 162 34 chr12 58837590 58837689 -85444800 + L2 LINE L2 2740 2825 -489 849 163 0 0 chr12 58837711 58837840 -85444649 - FLAM_A SINE Alu -1 132 4 2743 167 48 31 chr12 58837858 58838380 -85444109 + MER74A LTR ERVL 28 558 0 283 331 138 0 chr12 58838387 58838532 -85443957 + L2 LINE L2 2851 3015 -298 1819 270 38 82 chr12 58839292 58839567 -85442922 + ERVL LTR ERVL 3087 3372 -2392 1812 141 0 14 chr12 58839567 58839850 -85442639 - AluJb SINE Alu -25 287 9 1819 270 38 82 chr12 58839850 58840493 -85441996 + ERVL LTR ERVL 3372 3965 -1799 231 36 0 0 chr12 58840493 58840521 -85441968 + (CAT)n Simple_repeat Simple_repeat 2 29 0 1156 254 8 0 chr12 58840521 58840773 -85441716 - MIR SINE MIR -8 254 1 795 255 45 21 chr12 58840841 58841084 -85441405 + ERVL LTR ERVL 4025 4273 -1491 1630 203 53 88 chr12 58841093 58841676 -85440813 + MLT1F1 LTR MaLR 1 565 -2 1512 282 33 62 chr12 58841676 58842285 -85440204 + ERVL LTR ERVL 4328 4918 -846 522 288 56 81 chr12 58842296 58842473 -85440016 + MLT1J LTR MaLR 27 207 -304 1782 195 72 19 chr12 58842473 58842848 -85439641 + MSTD LTR MaLR 2 396 0 522 288 56 81 chr12 58842848 58843167 -85439322 + MLT1J LTR MaLR 207 511 0 363 296 14 21 chr12 58843167 58843309 -85439180 + ERVL LTR ERVL 4869 5009 -476 1773 168 42 6 chr12 58843564 58843897 -85438592 - MER7A DNA MER2_type -3 343 1 1553 170 71 19 chr12 58843910 58844234 -85438255 - MER2 DNA MER2_type -3 341 1 438 174 0 0 chr12 58844255 58844324 -85438165 - MER2 DNA MER2_type -8 337 269 229 383 8 0 chr12 58844493 58844621 -85437868 + (TGGA)n Simple_repeat Simple_repeat 2 130 0 1022 265 91 6 chr12 58844964 58845315 -85437174 - HAL1 LINE L1 -628 1879 1499 1911 135 16 16 chr12 58846599 58846902 -85435587 - AluSx SINE Alu -9 303 1 300 281 16 33 chr12 58847206 58847327 -85435162 + CT-rich Low_complexity Low_complexity 2 120 0 40 67 0 0 chr12 58847553 58847628 -85434861 + AT_rich Low_complexity Low_complexity 1 75 0 693 186 0 17 chr12 58847628 58847746 -85434743 - AluSg SINE Alu -192 118 3 807 164 79 6 chr12 58848385 58848550 -85433939 - AluJb SINE Alu -2 310 134 1722 153 10 35 chr12 58848550 58848722 -85433767 - AluSq SINE Alu -8 305 143 2076 107 24 0 chr12 58848722 58849011 -85433478 - AluSq SINE Alu -17 296 1 1035 126 17 46 chr12 58849011 58849151 -85433338 - AluSx SINE Alu -177 135 1 1722 153 10 35 chr12 58849011 58849151 -85433338 - AluSq SINE Alu -170 143 1 600 274 82 38 chr12 58849712 58850004 -85432485 - MLT1H LTR MaLR 0 549 245 209 342 120 5 chr12 58850188 58850372 -85432117 - L2 LINE L2 -727 2587 2383 2046 210 26 37 chr12 58850483 58851190 -85431299 - LTR27 LTR ERV1 -2 634 5 273 150 0 0 chr12 58851915 58851955 -85430534 + MIR SINE MIR 112 151 -57 1500 223 71 69 chr12 58851965 58852503 -85429986 + MLT1F LTR MaLR 4 542 0 755 263 116 16 chr12 58852509 58852944 -85429545 + MLT1F1-int LTR MaLR 16 582 -789 508 243 56 128 chr12 58853468 58853876 -85428613 + MLT1F1-int LTR MaLR 992 1370 -1 1009 247 185 32 chr12 58853901 58854211 -85428278 + MLT1F1 LTR MaLR 25 286 -281 2086 148 0 0 chr12 58854211 58854502 -85427987 - AluSx SINE Alu -17 295 5 1009 247 185 32 chr12 58854502 58854660 -85427829 + MLT1F1 LTR MaLR 286 562 -5 368 267 105 52 chr12 58854703 58854875 -85427614 + MIR SINE MIR 32 212 -50 399 282 40 16 chr12 58856485 58856609 -85425880 + L2 LINE L2 2965 3091 -181 528 201 27 62 chr12 58857400 58857578 -85424911 - MER104 DNA Tc2 -2 178 1 3399 146 3 1 chr12 58857613 58858578 -85423911 + L1PB1 LINE L1 4767 5733 -418 234 0 0 0 chr12 58858578 58858604 -85423885 + (TA)n Simple_repeat Simple_repeat 1 26 0 2373 109 8 3 chr12 58858607 58858965 -85423524 + L1PB1 LINE L1 5791 6150 -1 268 358 53 0 chr12 58860345 58860440 -85422049 + MIR SINE MIR 36 135 -73 256 292 11 56 chr12 58861000 58861089 -85421400 - L2 LINE L2 -4 3268 3184 23 0 0 71 chr12 58861113 58861133 -85421356 + AT_rich Low_complexity Low_complexity 1 18 -21 4349 123 18 3 chr12 58861133 58861801 -85420688 - L1PA16 LINE L1 -10 6156 5479 23 0 0 71 chr12 58861801 58861822 -85420667 + AT_rich Low_complexity Low_complexity 18 39 0 5853 112 24 7 chr12 58861924 58863585 -85418904 - L1PA13 LINE L1 -8 6155 4481 40503 52 6 1 chr12 58863585 58869699 -85412790 - L1PA4 LINE L1 -7 6148 7 1242 172 12 118 chr12 58869706 58870037 -85412452 - AluJo SINE Alu -4 298 3 7620 149 26 16 chr12 58870038 58871720 -85410769 - L1M2 LINE L1 -743 5403 3775 21 36 0 0 chr12 58871734 58871762 -85410727 + AT_rich Low_complexity Low_complexity 1 28 0 192 149 0 0 chr12 58871780 58871827 -85410662 + (T)n Simple_repeat Simple_repeat 1 47 0 39898 42 23 2 chr12 58871828 58877854 -85404635 - L1PA3 LINE L1 -1 6154 3 2411 201 43 8 chr12 58877855 58878498 -85403991 - L1M2 LINE L1 -2364 3782 3117 28 0 0 0 chr12 58878505 58878533 -85403956 + AT_rich Low_complexity Low_complexity 1 28 0 7190 170 6 10 chr12 58878537 58878897 -85403592 - L1PB1 LINE L1 -10 7560 7200 204 40 0 0 chr12 58878897 58878922 -85403567 + (TA)n Simple_repeat Simple_repeat 1 25 0 7190 170 6 10 chr12 58878922 58880995 -85401494 - L1PB1 LINE L1 -370 7200 5137 1325 170 36 12 chr12 58880991 58881332 -85401157 - L1PB1 LINE L1 -3707 3858 3512 * 25 65 0 0 chr12 58882485 58882531 -85399958 + AT_rich Low_complexity Low_complexity 1 46 0 382 295 97 64 chr12 58882615 58882957 -85399532 - ERVL LTR ERVL -1334 4430 4078 503 241 7 48 chr12 58883526 58883671 -85398818 - MLT1K LTR MaLR -5 583 445 24 0 0 0 chr12 58884569 58884593 -85397896 + AT_rich Low_complexity Low_complexity 1 24 0 3972 98 25 0 chr12 58885733 58886305 -85396184 + L1PA13 LINE L1 5578 6163 0 204 130 188 29 chr12 58887497 58887566 -85394923 - L2 LINE L2 -922 2392 2313 3670 190 17 7 chr12 58887612 58888450 -85394039 + L1M2 LINE L1 1965 2810 -4039 7376 39 1 0 chr12 58888466 58889921 -85392568 + L1PA4 LINE L1 4690 6150 -5 205 244 0 0 chr12 58889992 58890033 -85392456 - MIR SINE MIR -10 252 212 368 328 30 8 chr12 58890524 58890658 -85391831 + MIR SINE MIR 4 140 -122 473 47 16 0 chr12 58890792 58890856 -85391633 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 187 356 119 0 chr12 58890856 58890966 -85391523 - L2 LINE L2 -7 3306 3180 243 0 0 0 chr12 58891952 58891979 -85390510 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3876 27 0 0 chr12 58891979 58892429 -85390060 - L1PA3 LINE L1 -5 6150 5701 23 0 0 0 chr12 58894512 58894535 -85387954 + AT_rich Low_complexity Low_complexity 1 23 0 1713 189 0 17 chr12 58894610 58894901 -85387588 - AluJo SINE Alu -26 286 1 386 211 164 0 chr12 58894901 58895005 -85387484 + MER112 DNA MER1_type 127 247 -13 3007 124 12 27 chr12 58896065 58896534 -85385955 - L1PA13 LINE L1 0 6163 5688 2072 138 36 30 chr12 58896534 58896895 -85385594 + THE1B LTR MaLR 2 364 0 11617 96 7 1 chr12 58896895 58898465 -85384024 + THE1B-int LTR MaLR 1 1580 0 1909 158 42 33 chr12 58898465 58898826 -85383663 + THE1B LTR MaLR 1 364 0 3007 124 12 27 chr12 58898826 58898871 -85383618 - L1PA13 LINE L1 -472 5691 5655 2038 176 54 10 chr12 58898871 58899281 -85383208 - MSTA LTR MaLR 0 428 1 4877 180 38 5 chr12 58899281 58900444 -85382045 - MSTA-int LTR MaLR 0 1651 392 1231 170 61 43 chr12 58900455 58900685 -85381804 + AluSq SINE Alu 23 256 -57 1702 127 7 40 chr12 58900685 58900929 -85381560 - L1M2 LINE L1 -536 5764 5530 1782 153 7 0 chr12 58900929 58901217 -85381272 - AluSx SINE Alu -22 290 1 1702 127 7 40 chr12 58901217 58901271 -85381218 - L1M2 LINE L1 -770 5530 5476 42559 51 16 4 chr12 58901286 58907364 -85375125 - L1PA3 LINE L1 -2 6153 1 1049 189 59 3 chr12 58907364 58907671 -85374818 - L1 LINE L1 -2887 4678 4355 * 1272 222 39 51 chr12 58907662 58908366 -85374123 - L1 LINE L1 -4920 2645 2008 1886 239 89 31 chr12 58908435 58909020 -85373469 - L1 LINE L1 -6405 1084 466 300 89 0 0 chr12 58909127 58909172 -85373317 + MADE1 DNA Mariner 36 80 0 929 244 75 0 chr12 58909216 58909523 -85372966 - L1PA15-16 LINE L1 -4573 2275 1852 * 4568 172 36 8 chr12 58909519 58910478 -85372011 + L1PB4 LINE L1 5156 6144 -12 246 280 10 0 chr12 58910515 58910615 -85371874 + T-rich Low_complexity Low_complexity 3 103 0 403 274 81 117 chr12 58910737 58911310 -85371179 - L1MEd LINE L1 -1333 1157 797 4626 138 5 41 chr12 58911516 58911985 -85370504 + L1PB3 LINE L1 5357 5787 -367 1982 148 0 0 chr12 58911985 58912296 -85370193 - AluSx SINE Alu -1 311 1 4626 138 5 41 chr12 58912296 58912630 -85369859 + L1PB3 LINE L1 5787 6131 -23 1257 144 0 29 chr12 58912630 58912716 -85369773 - AluSx SINE Alu -110 202 115 531 117 0 0 chr12 58912716 58912793 -85369696 + MADE1 DNA Mariner 4 80 0 1257 144 0 29 chr12 58912793 58912914 -85369575 - AluSx SINE Alu -197 115 1 37 39 0 0 chr12 58912915 58912966 -85369523 + AT_rich Low_complexity Low_complexity 1 51 0 507 323 106 0 chr12 58913821 58914056 -85368433 - MIR SINE MIR -1 261 2 25 65 0 0 chr12 58915428 58915474 -85367015 + AT_rich Low_complexity Low_complexity 1 46 0 1455 252 35 8 chr12 58918493 58918862 -85363627 + LTR52-int LTR ERVL 1570 1948 -1608 4338 256 74 55 chr12 58918864 58919063 -85363426 + MSTC-int LTR MaLR 24 218 -1433 6963 65 11 0 chr12 58919063 58920031 -85362458 + L1PA6 LINE L1 5176 6153 -1 4338 256 74 55 chr12 58920031 58921425 -85361064 + MSTC-int LTR MaLR 218 1646 -5 1879 177 45 22 chr12 58921430 58921786 -85360703 + MSTC LTR MaLR 1 364 -64 772 64 0 0 chr12 58921792 58921886 -85360603 + L1P LINE L1 5 98 -6048 * 8772 106 4 14 chr12 58921884 58923138 -85359351 + L1P LINE L1 623 1864 -4282 810 141 35 28 chr12 58923239 58923381 -85359108 - AluSc SINE Alu -35 274 132 2197 97 3 7 chr12 58923381 58923691 -85358798 - AluSq SINE Alu -4 309 1 321 299 102 45 chr12 58923743 58923900 -85358589 + MIR SINE MIR 31 196 -66 1937 126 23 3 chr12 58923935 58924237 -85358252 + AluSx SINE Alu 1 308 -4 2146 101 7 3 chr12 58924241 58924549 -85357940 + AluSp SINE Alu 1 309 -4 741 136 119 0 chr12 58924565 58924683 -85357806 + AluJb SINE Alu 2 133 -179 1963 111 0 7 chr12 58924684 58924963 -85357526 + AluSx SINE Alu 1 277 -35 182 236 18 18 chr12 58925776 58925831 -85356658 - L2 LINE L2 -86 3227 3173 224 130 65 43 chr12 58928344 58928390 -85354099 - MIR SINE MIR -72 190 144 2096 92 3 3 chr12 58928392 58928674 -85353815 + AluSx SINE Alu 1 282 -30 630 228 0 8 chr12 58928694 58928817 -85353672 - MIR SINE MIR -108 154 33 386 246 112 77 chr12 58928871 58929233 -85353256 - L2 LINE L2 -192 3080 2265 437 50 17 0 chr12 58929255 58929315 -85353174 + (TTTTC)n Simple_repeat Simple_repeat 3 63 0 2283 100 7 0 chr12 58929324 58929633 -85352856 - AluSx SINE Alu -1 311 1 186 242 97 0 chr12 58929966 58930028 -85352461 - MIR SINE MIR -73 189 122 2595 45 0 0 chr12 58930436 58930747 -85351742 - AluY SINE Alu 0 311 1 286 346 0 15 chr12 58931448 58931584 -85350905 + C-rich Low_complexity Low_complexity 3 136 0 424 310 4 18 chr12 58931811 58932030 -85350459 + CT-rich Low_complexity Low_complexity 1 215 0 234 95 0 48 chr12 58932153 58932216 -85350273 + (CCCG)n Simple_repeat Simple_repeat 2 61 0 180 200 0 0 chr12 58932262 58932302 -85350187 + C-rich Low_complexity Low_complexity 3 42 0 339 25 0 0 chr12 58932437 58932477 -85350012 + (CGG)n Simple_repeat Simple_repeat 3 42 0 195 100 0 0 chr12 58934608 58934638 -85347851 + (GGGGA)n Simple_repeat Simple_repeat 4 33 0 192 125 0 0 chr12 58934747 58934779 -85347710 + (TCCCC)n Simple_repeat Simple_repeat 1 32 0 390 232 98 0 chr12 58935981 58936063 -85346426 - L2 LINE L2 -5 3267 3178 355 244 15 30 chr12 58939163 58939298 -85343191 + (CAGAGA)n Simple_repeat Simple_repeat 5 137 0 22 0 0 0 chr12 58939485 58939507 -85342982 + AT_rich Low_complexity Low_complexity 1 22 0 190 259 35 35 chr12 58940454 58940512 -85341977 + MIR SINE MIR 109 166 -96 2082 94 7 13 chr12 58942524 58942832 -85339657 + AluSg SINE Alu 1 306 -4 888 220 0 11 chr12 58942837 58943014 -85339475 + FAM SINE Alu 1 175 0 238 274 157 78 chr12 58943707 58943911 -85338578 - MIR SINE MIR 0 262 43 2208 95 0 0 chr12 58947401 58947695 -85334794 + AluSg SINE Alu 1 294 -16 785 97 0 0 chr12 58947768 58947871 -85334618 + MSTA LTR MaLR 259 361 -67 1711 135 14 14 chr12 58947986 58948275 -85334214 + AluJo SINE Alu 6 294 -18 2149 100 13 3 chr12 58948276 58948575 -85333914 + AluSq SINE Alu 1 302 -11 301 349 32 0 chr12 58949023 58949149 -85333340 - MER5B DNA MER1_type -16 162 33 2296 82 3 3 chr12 58949269 58949572 -85332917 + AluSp SINE Alu 1 303 -10 2238 82 38 7 chr12 58951027 58951153 -85331336 + AluSq SINE Alu 1 122 -191 230 0 33 0 chr12 58951153 58951183 -85331306 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 2238 82 38 7 chr12 58951183 58951348 -85331141 + AluSq SINE Alu 122 301 -12 2368 64 0 45 chr12 58951746 58952057 -85330432 + AluY SINE Alu 1 297 -14 1855 144 88 9 chr12 58952307 58952646 -85329843 - MER47A DNA MER2_type 0 366 1 193 284 203 0 chr12 58952938 58953012 -85329477 + L2 LINE L2 3184 3272 0 2095 118 28 3 chr12 58953268 58953555 -85328934 + AluSx SINE Alu 1 294 -18 2118 112 3 10 chr12 58953557 58953851 -85328638 + AluSx SINE Alu 1 292 -20 2164 109 3 13 chr12 58953854 58954158 -85328331 + AluSx SINE Alu 1 301 -11 424 310 4 18 chr12 58954762 58954981 -85327508 + CT-rich Low_complexity Low_complexity 1 215 0 205 113 0 38 chr12 58955104 58955157 -85327332 + (CCCG)n Simple_repeat Simple_repeat 3 53 0 180 200 0 0 chr12 58955216 58955256 -85327233 + C-rich Low_complexity Low_complexity 3 42 0 339 25 0 0 chr12 58955391 58955431 -85327058 + (CGG)n Simple_repeat Simple_repeat 3 42 0 195 100 0 0 chr12 58957563 58957593 -85324896 + (GGGGA)n Simple_repeat Simple_repeat 4 33 0 192 125 0 0 chr12 58957702 58957734 -85324755 + (TCCCC)n Simple_repeat Simple_repeat 1 32 0 390 232 98 0 chr12 58958936 58959018 -85323471 - L2 LINE L2 -5 3267 3178 355 244 15 30 chr12 58962118 58962253 -85320236 + (CAGAGA)n Simple_repeat Simple_repeat 5 137 0 22 0 0 0 chr12 58962440 58962462 -85320027 + AT_rich Low_complexity Low_complexity 1 22 0 194 259 35 35 chr12 58963409 58963467 -85319022 + MIR SINE MIR 109 166 -96 1735 118 0 0 chr12 58964444 58964672 -85317817 + AluJb SINE Alu 67 294 -18 2113 132 16 7 chr12 58964675 58964803 -85317686 + AluSx SINE Alu 1 126 -186 240 35 0 0 chr12 58964803 58964832 -85317657 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 2113 132 16 7 chr12 58964832 58965007 -85317482 + AluSx SINE Alu 126 307 -5 316 237 140 9 chr12 58965007 58965121 -85317368 + MIR SINE MIR 63 191 -71 1488 144 112 12 chr12 58965260 58965510 -85316979 + AluSx SINE Alu 27 301 -11 1112 124 5 18 chr12 58965511 58965745 -85316744 - MSTA LTR MaLR 0 428 122 2351 95 0 0 chr12 58965756 58966050 -85316439 - AluSg SINE Alu -16 294 1 232 274 157 78 chr12 58969544 58969748 -85312741 + MIR SINE MIR 43 262 0 915 220 0 11 chr12 58970441 58970618 -85311871 - FAM SINE Alu 0 175 1 2228 97 7 13 chr12 58970623 58970932 -85311557 - AluSg SINE Alu -3 307 1 1596 185 21 11 chr12 58972094 58972380 -85310109 + AluJo SINE Alu 1 289 -23 2223 91 20 10 chr12 58972883 58973181 -85309308 - AluSc SINE Alu -8 301 1 2259 77 13 32 chr12 58973181 58973494 -85308995 - AluSp SINE Alu -6 307 1 506 343 60 0 chr12 58973818 58973984 -85308505 + MIR SINE MIR 16 191 -71 904 130 0 14 chr12 58973985 58974123 -85308366 + AluJo SINE Alu 2 137 -175 2135 108 17 17 chr12 58974132 58974428 -85308061 + AluSx SINE Alu 3 298 -14 263 203 38 63 chr12 58974432 58974511 -85307978 + MIR SINE MIR 185 261 -1 26 0 0 0 chr12 58974512 58974538 -85307951 + AT_rich Low_complexity Low_complexity 1 26 0 819 64 18 9 chr12 58975165 58975274 -85307215 + AluSp SINE Alu 1 110 -203 880 84 0 0 chr12 58975390 58975497 -85306992 - AluY SINE Alu -204 107 1 935 149 34 4 chr12 58975536 58975744 -85306745 + AluJb SINE Alu 1 306 -6 2572 60 0 3 chr12 58976172 58976473 -85306016 + AluY SINE Alu 1 300 -11 1900 164 7 7 chr12 58976863 58977167 -85305322 - AluJo SINE Alu -8 304 1 475 240 0 10 chr12 58977795 58977891 -85304598 + MER81 DNA DNA 7 101 -13 299 336 101 5 chr12 58977904 58978022 -85304467 - MIR SINE MIR -33 229 124 2208 113 3 0 chr12 58978022 58978314 -85304175 + AluSx SINE Alu 11 303 -9 299 336 101 5 chr12 58978314 58978403 -85304086 - MIR SINE MIR -138 124 2 2240 94 7 29 chr12 58980142 58980449 -85302040 - AluSx SINE Alu -12 300 1 1005 181 18 0 chr12 58981806 58981977 -85300512 - FAM SINE Alu -1 174 1 26 30 0 0 chr12 58985216 58985249 -85297240 + AT_rich Low_complexity Low_complexity 1 33 0 225 292 0 14 chr12 58986081 58986153 -85296336 - Charlie4 DNA MER1_type -6 1955 1885 1947 115 16 36 chr12 58986252 58986556 -85295933 + AluSx SINE Alu 1 298 -14 1582 177 61 27 chr12 58986674 58986968 -85295521 + AluJb SINE Alu 1 304 -8 314 94 0 19 chr12 58987248 58987301 -85295188 + AluSp/q SINE Alu 245 296 -7 714 174 0 8 chr12 58987301 58987422 -85295067 - AluJo/FLAM SINE Alu -191 121 2 321 197 120 8 chr12 58987580 58987697 -85294792 + L1ME4a LINE L1 5992 6121 0 2406 67 0 39 chr12 58987791 58988103 -85294386 - AluY SINE Alu -11 300 1 653 220 0 0 chr12 58988108 58988226 -85294263 - FLAM_C SINE Alu -15 128 11 515 250 254 26 chr12 58988272 58988500 -85293989 + MER5C DNA MER1_type 2 281 -43 691 202 39 8 chr12 58988537 58988666 -85293823 + FLAM_A SINE Alu 1 133 0 1495 79 0 0 chr12 58988786 58988964 -85293525 + AluSg SINE Alu 1 178 -132 555 147 0 0 chr12 58988965 58989040 -85293449 + AluSc SINE Alu 211 285 -24 2209 110 3 0 chr12 58989061 58989352 -85293137 + AluSx SINE Alu 13 304 -8 2397 86 0 10 chr12 58989439 58989740 -85292749 + AluSg SINE Alu 1 298 -12 2610 61 0 6 chr12 58991696 58992008 -85290481 + AluSg SINE Alu 1 310 0 244 246 0 0 chr12 58993347 58993404 -85289085 + (CA)n Simple_repeat Simple_repeat 1 57 0 228 169 124 124 chr12 58995499 58995588 -85286901 - MLT1D LTR MaLR -349 156 68 2246 112 3 16 chr12 58995604 58995917 -85286572 - AluSc SINE Alu 0 309 1 2249 255 71 53 chr12 58996025 58996490 -85285999 + HAL1 LINE L1 551 1006 -1501 1760 110 17 0 chr12 58996490 58996727 -85285762 - AluSg SINE Alu -6 304 64 2249 255 71 53 chr12 58996727 58997010 -85285479 + HAL1 LINE L1 1006 1282 -1225 1938 144 7 7 chr12 58997010 58997301 -85285188 + AluJb SINE Alu 1 291 -21 2249 255 71 53 chr12 58997301 58997427 -85285062 + HAL1 LINE L1 1282 1404 -1103 2133 117 0 37 chr12 58997427 58997610 -85284879 - AluSx SINE Alu 0 312 124 2070 113 0 20 chr12 58997610 58997912 -85284577 - AluSg SINE Alu -12 298 3 2311 62 0 59 chr12 58997913 58998233 -85284256 - AluY SINE Alu -10 301 1 2133 117 0 37 chr12 58998233 58998371 -85284118 - AluSx SINE Alu -187 125 1 2249 255 71 53 chr12 58998371 58998616 -85283873 + HAL1 LINE L1 1404 1693 -814 3323 135 53 9 chr12 58998620 58999190 -85283299 - LTR49 LTR ERV1 0 595 1 8174 131 22 32 chr12 58999190 59000121 -85282368 - LTR49-int LTR ERV1 0 6331 5393 2232 117 0 3 chr12 59000121 59000419 -85282070 - AluSx SINE Alu -10 302 6 8174 131 22 32 chr12 59000419 59000581 -85281908 - LTR49-int LTR ERV1 -938 5393 5231 1969 175 10 0 chr12 59000581 59000890 -85281599 + AluSx SINE Alu 1 312 0 8174 131 22 32 chr12 59000890 59001283 -85281206 - LTR49-int LTR ERV1 -1100 5231 4858 1811 168 21 0 chr12 59001283 59001568 -85280921 + AluJb SINE Alu 1 291 -21 1859 142 4 0 chr12 59001573 59001840 -85280649 + AluSx SINE Alu 1 268 -44 207 0 0 0 chr12 59001847 59001870 -85280619 + (T)n Simple_repeat Simple_repeat 1 23 0 1578 113 13 4 chr12 59001870 59002108 -85280381 - SVA Other Other -419 967 728 1575 197 7 33 chr12 59002142 59002447 -85280042 + AluJo SINE Alu 1 297 -15 672 158 0 0 chr12 59002449 59002550 -85279939 + AluJ/FLAM SINE Alu 1 101 -211 180 176 0 0 chr12 59002985 59003019 -85279470 + (TATATG)n Simple_repeat Simple_repeat 5 38 0 306 232 43 0 chr12 59003134 59003203 -85279286 - MIR SINE MIR -30 232 161 300 257 50 50 chr12 59003212 59003352 -85279137 - L1MC5 LINE L1 -15 7946 7807 * 631 266 89 13 chr12 59003338 59003575 -85278914 - L1MC4a LINE L1 -1983 5825 5571 1700 149 3 7 chr12 59003575 59003863 -85278626 - AluJb SINE Alu -13 299 13 350 225 34 0 chr12 59005385 59005474 -85277015 + AluS SINE Alu 1 92 -211 2094 105 13 10 chr12 59005713 59006018 -85276471 - AluSx SINE Alu -6 306 1 234 257 29 103 chr12 59006245 59006381 -85276108 - L2 LINE L2 -487 2827 2702 824 265 32 40 chr12 59006554 59006762 -85275727 - MIR SINE MIR -3 259 52 2318 82 3 0 chr12 59006762 59007066 -85275423 + AluSp SINE Alu 1 305 -8 824 265 32 40 chr12 59007066 59007106 -85275383 - MIR SINE MIR -210 52 13 440 339 81 42 chr12 59007191 59007363 -85275126 + L2 LINE L2 2966 3130 -183 2287 72 3 0 chr12 59007363 59007653 -85274836 + AluSg SINE Alu 2 292 -18 440 339 81 42 chr12 59007653 59007813 -85274676 + L2 LINE L2 3130 3311 -2 318 307 204 25 chr12 59007842 59008122 -85274367 - L2 LINE L2 -767 2547 2218 * 1134 256 114 18 chr12 59008106 59008793 -85273696 - L2 LINE L2 -4 3309 2482 907 193 0 57 chr12 59008997 59009261 -85273228 - AluJb SINE Alu 0 321 71 611 92 11 0 chr12 59009373 59009460 -85273029 + AluSp/q SINE Alu 214 301 -12 1718 173 0 13 chr12 59009495 59009801 -85272688 + AluJo SINE Alu 1 302 -10 1793 134 41 3 chr12 59010144 59010434 -85272055 - AluJb SINE Alu -6 306 6 993 198 0 0 chr12 59010445 59010622 -85271867 - AluJb SINE Alu -7 305 129 325 137 0 0 chr12 59010623 59010674 -85271815 - L1MB8 LINE L1 0 6178 6128 1869 146 3 3 chr12 59010691 59010986 -85271503 - AluJb SINE Alu -15 297 3 2793 136 69 34 chr12 59010986 59011345 -85271144 - MER4E LTR ERV1 -136 643 259 2106 110 0 10 chr12 59011345 59011655 -85270834 - AluSq SINE Alu -6 307 1 2793 136 69 34 chr12 59011655 59011802 -85270687 - MER4E LTR ERV1 -520 259 119 1726 148 13 20 chr12 59011999 59012302 -85270187 - AluJb SINE Alu -11 301 1 1781 107 45 36 chr12 59012464 59012772 -85269717 + AluSx SINE Alu 1 311 -1 771 179 73 0 chr12 59012776 59012927 -85269562 + AluJo SINE Alu 2 163 -149 1717 98 0 35 chr12 59013989 59014244 -85268245 + AluY SINE Alu 2 247 -64 2558 10 0 0 chr12 59014363 59014651 -85267838 - AluYa5 SINE Alu -23 288 1 2136 69 4 4 chr12 59014711 59014988 -85267501 - AluY SINE Alu -10 301 25 4430 146 25 72 chr12 59015020 59015959 -85266530 - LTR49-int LTR ERV1 -2736 3595 2702 2157 129 0 0 chr12 59015999 59016309 -85266180 + AluSx SINE Alu 3 312 0 227 288 17 0 chr12 59016348 59016407 -85266082 - MER31A LTR ERV1 -400 85 26 858 214 13 23 chr12 59016407 59016621 -85265868 - LTR49-int LTR ERV1 -3689 2642 758 2058 121 0 0 chr12 59016628 59016949 -85265540 - AluSx SINE Alu 0 321 1 1236 168 87 45 chr12 59017666 59017952 -85264537 - AluJb SINE Alu -9 303 6 498 293 85 0 chr12 59018831 59018995 -85263494 - MIR SINE MIR -14 248 71 2188 101 3 10 chr12 59021344 59021651 -85260838 + AluSx SINE Alu 2 306 -6 1566 168 46 0 chr12 59022429 59022691 -85259798 + AluJb SINE Alu 1 274 -38 250 94 0 57 chr12 59022814 59022867 -85259622 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 438 20 0 0 chr12 59023897 59023948 -85258541 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 846 159 0 14 chr12 59023960 59024105 -85258384 - FLAM_C SINE Alu 0 143 1 2094 118 3 3 chr12 59026075 59026372 -85256117 + AluSq SINE Alu 1 297 -16 182 264 32 88 chr12 59026438 59026563 -85255926 + L2 LINE L2 3153 3270 -2 2046 117 3 0 chr12 59026654 59026935 -85255554 + AluSg SINE Alu 1 285 -25 192 77 0 0 chr12 59026935 59026961 -85255528 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 624 78 10 39 chr12 59026978 59027081 -85255408 + L1PB1 LINE L1 6051 6150 -1 2237 75 0 0 chr12 59027097 59027375 -85255114 + AluSx SINE Alu 3 280 -32 210 37 0 0 chr12 59027385 59027412 -85255077 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 312 370 74 5 chr12 59027421 59027624 -85254865 - MIR SINE MIR -44 218 2 361 184 78 57 chr12 59028149 59028290 -85254199 - L1ME4a LINE L1 0 6121 5978 217 278 0 28 chr12 59028384 59028456 -85254033 + G-rich Low_complexity Low_complexity 2 71 0 1174 159 33 78 chr12 59028542 59028813 -85253676 - AluJb SINE Alu -48 264 6 231 114 0 0 chr12 59028840 59028875 -85253614 + (TA)n Simple_repeat Simple_repeat 1 35 0 406 209 112 53 chr12 59029024 59029072 -85253417 - MIR SINE MIR -45 163 119 2161 110 0 0 chr12 59029072 59029371 -85253118 - AluSx SINE Alu -13 299 1 406 209 112 53 chr12 59029371 59029493 -85252996 - MIR SINE MIR -89 119 6 2119 120 0 13 chr12 59030776 59031092 -85251397 - AluSx SINE Alu 0 312 1 1420 53 79 0 chr12 59031492 59031682 -85250807 - AluSp SINE Alu -6 307 103 252 122 0 0 chr12 59031826 59031867 -85250622 + (T)n Simple_repeat Simple_repeat 1 41 0 426 217 28 91 chr12 59033642 59033785 -85248704 - L1ME3 LINE L1 0 6162 6029 1519 183 14 14 chr12 59033823 59033955 -85248534 + AluJb SINE Alu 1 132 -180 1565 104 0 0 chr12 59033955 59034167 -85248322 + AluSg/x SINE Alu 85 296 -16 1519 183 14 14 chr12 59034167 59034323 -85248166 + AluJb SINE Alu 131 289 -23 4009 168 29 46 chr12 59034369 59034546 -85247943 + L1MC1 LINE L1 4616 4794 -1539 1742 147 25 3 chr12 59034546 59034832 -85247657 + AluJb SINE Alu 1 292 -20 4009 168 29 46 chr12 59034832 59035967 -85246522 + L1MC1 LINE L1 4794 5893 -440 2146 102 0 16 chr12 59035967 59036271 -85246218 + AluSx SINE Alu 1 299 -13 848 214 6 0 chr12 59036271 59036449 -85246040 + AluSg/x SINE Alu 134 312 0 612 63 0 144 chr12 59036451 59036562 -85245927 + L1MC1 LINE L1 5879 5973 -360 1800 160 3 7 chr12 59036565 59036698 -85245791 + AluJb SINE Alu 1 133 -179 2363 86 0 0 chr12 59036698 59037001 -85245488 + AluSg SINE Alu 1 303 -7 1800 160 3 7 chr12 59037001 59037155 -85245334 + AluJb SINE Alu 133 287 -25 2294 36 0 4 chr12 59037166 59037445 -85245044 + AluY SINE Alu 1 278 -33 958 63 0 8 chr12 59037445 59037571 -85244918 + L1PA5 LINE L1 6022 6146 -8 24 0 0 0 chr12 59037571 59037595 -85244894 + AT_rich Low_complexity Low_complexity 1 24 0 486 242 134 72 chr12 59037595 59037818 -85244671 + HAL1 LINE L1 23 259 -2248 1790 117 4 4 chr12 59037832 59038089 -85244400 - AluSq SINE Alu -22 291 35 1464 81 38 10 chr12 59038211 59038420 -85244069 - MLT2A1 LTR ERVL -229 215 1 23 0 0 0 chr12 59038511 59038534 -85243955 + AT_rich Low_complexity Low_complexity 1 23 0 2382 79 3 0 chr12 59039130 59039435 -85243054 + AluSc SINE Alu 1 306 -3 1323 192 71 25 chr12 59039497 59039778 -85242711 - AluJo SINE Alu -18 294 1 2139 116 0 0 chr12 59039790 59040092 -85242397 - AluSx SINE Alu -10 302 1 1372 133 78 0 chr12 59040092 59040310 -85242179 - L1PA16 LINE L1 -127 6039 5805 2108 93 3 13 chr12 59040338 59040638 -85241851 - AluSq SINE Alu -16 297 1 1786 160 31 0 chr12 59040656 59040944 -85241545 - AluJb SINE Alu -15 297 1 2169 86 3 10 chr12 59040953 59041257 -85241232 - AluSp SINE Alu -11 302 1 2177 97 0 0 chr12 59041426 59041715 -85240774 - AluSx SINE Alu -18 294 6 1022 127 57 0 chr12 59042196 59042353 -85240136 - AluSg/x SINE Alu -12 300 135 263 309 64 74 chr12 59042401 59042536 -85239953 + L2 LINE L2 1862 1997 -1317 2045 121 0 0 chr12 59042536 59042841 -85239648 - AluY SINE Alu -6 305 1 263 309 64 74 chr12 59042841 59043096 -85239393 + L2 LINE L2 1997 2248 -1066 636 259 0 7 chr12 59043802 59043941 -85238548 + L2 LINE L2 3161 3298 -15 196 226 75 0 chr12 59044441 59044494 -85237995 - L2 LINE L2 0 3272 3216 252 350 56 21 chr12 59044603 59044746 -85237743 - L2 LINE L2 -199 3073 2926 2208 98 3 0 chr12 59044787 59045092 -85237397 - AluSq SINE Alu -7 306 1 1074 95 0 7 chr12 59045194 59045342 -85237147 - AluSp SINE Alu -34 279 133 1928 149 0 10 chr12 59045400 59045708 -85236781 - AluSx SINE Alu -7 305 1 941 26 17 9 chr12 59045789 59045905 -85236584 + MER4E LTR ERV1 1 117 -649 1892 141 14 0 chr12 59046095 59046385 -85236104 - AluSx SINE Alu -18 294 1 1557 80 38 5 chr12 59046385 59046597 -85235892 + MLT2A1 LTR ERVL 226 444 0 1398 200 10 27 chr12 59046602 59046902 -85235587 - AluJb SINE Alu -17 295 1 2256 96 0 0 chr12 59047022 59047324 -85235165 - AluSx SINE Alu -10 302 1 4455 139 42 93 chr12 59047898 59047942 -85234547 - MER39B-int LTR ERV1 -4464 1482 1437 2148 111 7 0 chr12 59047942 59048249 -85234240 - AluSx SINE Alu -3 309 1 4455 139 42 93 chr12 59048249 59048788 -85233701 - MER39B-int LTR ERV1 -4509 1437 872 1760 133 0 0 chr12 59048788 59049051 -85233438 + AluSx SINE Alu 2 264 -48 270 0 0 0 chr12 59049058 59049088 -85233401 + (CAA)n Simple_repeat Simple_repeat 1 30 0 4455 139 42 93 chr12 59049088 59049777 -85232712 - MER39B-int LTR ERV1 -5080 866 1 408 159 0 0 chr12 59049779 59049842 -85232647 - MER39B LTR ERV1 0 653 591 1132 146 0 0 chr12 59049842 59050006 -85232483 + U1 snRNA snRNA 1 164 -1 2237 65 11 0 chr12 59050058 59050360 -85232129 - AluSx SINE Alu 0 305 1 21 36 0 0 chr12 59050360 59050388 -85232101 + AT_rich Low_complexity Low_complexity 1 28 0 3302 125 42 6 chr12 59050397 59050926 -85231563 - LTR49 LTR ERV1 -47 548 1 569 255 42 71 chr12 59050927 59051166 -85231323 + HAL1 LINE L1 1705 1936 -571 182 91 30 0 chr12 59051222 59051255 -85231234 + A-rich Low_complexity Low_complexity 2 35 0 3344 146 72 48 chr12 59051265 59051936 -85230553 + L1M4c LINE L1 21 707 -5677 966 91 0 0 chr12 59051939 59052071 -85230418 + AluY SINE Alu 1 132 -179 2115 110 0 10 chr12 59052078 59052387 -85230102 + AluSg1 SINE Alu 1 306 -3 5342 133 42 46 chr12 59052393 59053381 -85229108 + L1M4c LINE L1 700 1684 -4700 2255 52 0 125 chr12 59053381 59053724 -85228765 + AluY SINE Alu 1 300 -11 5342 133 42 46 chr12 59053724 59053863 -85228626 + L1M4c LINE L1 1684 1822 -4562 2338 71 3 7 chr12 59053865 59054159 -85228330 + AluSg SINE Alu 3 295 -15 1196 129 29 0 chr12 59054159 59054329 -85228160 + AluSg/x SINE Alu 132 306 -4 427 279 25 35 chr12 59054485 59054682 -85227807 - L1MEc LINE L1 -6153 243 49 2088 130 3 7 chr12 59054877 59055190 -85227299 + AluSx SINE Alu 1 312 0 1961 146 31 76 chr12 59055288 59055721 -85226768 + L1MB4 LINE L1 5717 6127 -53 1723 199 3 3 chr12 59055721 59056018 -85226471 + AluJo SINE Alu 1 297 -15 1961 146 31 76 chr12 59056018 59056070 -85226419 + L1MB4 LINE L1 6127 6180 0 281 273 129 5 chr12 59056099 59056205 -85226284 + L1ME LINE L1 5602 5694 -427 216 97 0 0 chr12 59056205 59056236 -85226253 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 281 273 129 5 chr12 59056236 59056323 -85226166 + L1ME LINE L1 5694 5819 -302 934 110 117 7 chr12 59056397 59056542 -85225947 - AluSg/x SINE Alu -20 292 132 186 43 0 0 chr12 59056542 59056565 -85225924 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2169 115 0 3 chr12 59056565 59056851 -85225638 - AluSq SINE Alu -28 285 1 1802 183 0 10 chr12 59057194 59057500 -85224989 - AluJo SINE Alu -9 303 1 654 206 8 0 chr12 59057911 59058042 -85224447 - MLT1D LTR MaLR -2 503 372 980 118 0 96 chr12 59058042 59058220 -85224269 + FRAM SINE Alu 1 161 -15 2212 117 27 0 chr12 59058220 59058520 -85223969 + AluSq SINE Alu 1 308 -5 865 204 98 134 chr12 59058520 59058916 -85223573 - MLT1D LTR MaLR -123 382 1 2149 166 107 0 chr12 59058940 59059325 -85223164 + MSTB LTR MaLR 1 426 0 2277 123 0 0 chr12 59059487 59059787 -85222702 - AluSx SINE Alu -12 300 1 2348 91 0 0 chr12 59059789 59060085 -85222404 - AluSq SINE Alu -17 296 1 1263 280 64 35 chr12 59060301 59060826 -85221663 + L1ME LINE L1 6 557 -5513 2187 116 0 7 chr12 59060826 59061163 -85221326 + AluSc SINE Alu 1 309 0 1263 280 64 35 chr12 59061163 59061322 -85221167 + L1ME LINE L1 557 710 -5360 787 210 216 50 chr12 59061323 59061397 -85221092 + LTR41 LTR ERVL 8 68 -705 2330 113 0 0 chr12 59061397 59061707 -85220782 + AluSg SINE Alu 1 310 0 787 210 216 50 chr12 59061707 59062046 -85220443 + LTR41 LTR ERVL 68 529 -244 419 98 0 0 chr12 59062044 59062105 -85220384 + LTR41 LTR ERVL 707 767 -6 * 616 119 8 52 chr12 59062108 59062242 -85220247 - L1M4c LINE L1 -4090 2294 2167 2147 124 7 0 chr12 59062250 59062540 -85219949 - AluSg SINE Alu -17 293 2 800 156 0 16 chr12 59062540 59062653 -85219836 - FLAM_C SINE Alu -198 114 2 1663 92 16 56 chr12 59062653 59062717 -85219772 - L1M4c LINE L1 -4278 2106 2041 2148 128 0 25 chr12 59062717 59062896 -85219593 - AluSx SINE Alu 0 312 130 2256 121 3 0 chr12 59062896 59063202 -85219287 - AluSx SINE Alu -5 307 1 2127 115 16 16 chr12 59063205 59063517 -85218972 - AluSx SINE Alu 0 312 1 2148 128 0 25 chr12 59063517 59063653 -85218836 - AluSx SINE Alu -184 128 1 1663 92 16 56 chr12 59063653 59063892 -85218597 - L1M4c LINE L1 -4343 2041 1815 2301 116 0 0 chr12 59063892 59064193 -85218296 - AluSx SINE Alu -11 301 1 544 260 27 20 chr12 59064193 59064343 -85218146 - LTR49-int LTR ERV1 -3849 2482 2332 2324 103 0 22 chr12 59064370 59064689 -85217800 - AluSx SINE Alu 0 312 1 2776 121 5 0 chr12 59064689 59065110 -85217379 - L1MC1 LINE L1 -440 5893 5471 961 135 6 43 chr12 59065247 59065410 -85217079 - AluSg/x SINE Alu -44 268 112 3628 101 70 30 chr12 59065455 59065523 -85216966 + Tigger3(Golem) DNA MER2_type 2330 2394 -634 2252 101 0 10 chr12 59065523 59065843 -85216646 + AluSx SINE Alu 1 312 0 3628 101 70 30 chr12 59065843 59065975 -85216514 + Tigger3(Golem) DNA MER2_type 2394 2519 -509 2224 124 7 3 chr12 59065975 59066281 -85216208 + AluSx SINE Alu 1 307 -5 3628 101 70 30 chr12 59066281 59066751 -85215738 + Tigger3(Golem) DNA MER2_type 2519 3028 0 22 0 0 0 chr12 59066761 59066783 -85215706 + AT_rich Low_complexity Low_complexity 1 22 0 2391 83 0 3 chr12 59067733 59068023 -85214466 - AluSx SINE Alu -23 289 1 232 176 20 59 chr12 59068064 59068136 -85214353 - L2 LINE L2 -248 3065 2997 239 308 31 54 chr12 59068166 59068296 -85214193 + L2 LINE L2 2158 2284 -1030 351 267 0 40 chr12 59068883 59068984 -85213505 + L1M4 LINE L1 5240 5336 -810 2502 62 0 23 chr12 59069109 59069416 -85213073 + AluY SINE Alu 1 300 -11 1176 182 55 38 chr12 59069452 59069688 -85212801 + AluJo SINE Alu 72 311 -1 526 202 99 78 chr12 59069696 59069774 -85212715 + L1MEc LINE L1 1771 1846 -4550 2240 128 0 3 chr12 59069774 59070086 -85212403 + AluSx SINE Alu 1 311 -1 526 202 99 78 chr12 59070086 59070250 -85212239 + L1MEc LINE L1 1846 2018 -4378 2349 108 0 16 chr12 59070251 59070567 -85211922 + AluSq SINE Alu 1 311 -2 243 195 49 0 chr12 59070567 59070690 -85211799 + (TA)n Simple_repeat Simple_repeat 1 129 0 446 196 146 55 chr12 59070696 59070845 -85211644 + L1MEc LINE L1 2009 2186 -4210 1830 182 16 3 chr12 59070845 59071152 -85211337 + AluJb SINE Alu 1 311 -1 446 196 146 55 chr12 59071152 59071222 -85211267 + L1MEc LINE L1 2186 2248 -4148 245 244 12 12 chr12 59071221 59071307 -85211182 - L1M LINE L1 -821 5350 5265 * 2128 143 3 0 chr12 59071546 59071847 -85210642 + AluSq SINE Alu 1 302 -11 270 136 0 0 chr12 59071847 59071891 -85210598 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 1192 127 19 42 chr12 59071892 59071934 -85210555 - Tigger3(Golem) DNA MER2_type -248 2780 2739 2283 91 3 3 chr12 59071934 59072230 -85210259 + AluSg SINE Alu 1 296 -14 2246 96 0 0 chr12 59072232 59072561 -85209928 + AluSx SINE Alu 1 329 0 2331 105 0 3 chr12 59072562 59072868 -85209621 + AluSg SINE Alu 1 305 -5 1192 127 19 42 chr12 59072868 59073032 -85209457 - Tigger3(Golem) DNA MER2_type -289 2739 2573 2240 53 0 126 chr12 59073139 59073480 -85209009 + AluY SINE Alu 3 300 -11 2136 105 13 64 chr12 59073480 59073618 -85208871 + L1M4c LINE L1 1684 1828 -4556 2431 54 40 3 chr12 59073618 59073915 -85208574 + AluY SINE Alu 1 308 -3 2136 105 13 64 chr12 59073915 59073927 -85208562 + L1M4c LINE L1 1828 1839 -4545 2245 119 0 3 chr12 59073927 59074229 -85208260 + AluSx SINE Alu 1 301 -11 2136 105 13 64 chr12 59074229 59074468 -85208021 + L1M4c LINE L1 1839 2054 -4330 1119 88 0 0 chr12 59074468 59074604 -85207885 + AluJb SINE Alu 1 136 -176 1985 112 0 21 chr12 59074604 59074889 -85207600 + AluSx SINE Alu 1 279 -33 965 241 4 0 chr12 59075012 59075249 -85207240 + MLT2A2 LTR ERVL 4 241 -212 482 110 0 0 chr12 59075351 59075424 -85207065 + Alu SINE Alu 228 300 -10 1077 310 48 17 chr12 59075429 59075960 -85206529 + L2 LINE L2 2722 3274 -39 192 97 0 0 chr12 59075963 59075994 -85206495 + (CATG)n Simple_repeat Simple_repeat 1 31 0 1006 171 49 0 chr12 59076028 59076085 -85206404 - MLT1D LTR MaLR 0 505 452 2228 87 16 10 chr12 59076085 59076394 -85206095 - AluSq SINE Alu -2 311 1 1006 171 49 0 chr12 59076394 59076541 -85205948 - MLT1D LTR MaLR -53 452 291 2351 106 0 0 chr12 59076767 59077069 -85205420 - AluSx SINE Alu -10 302 1 1293 124 23 1 chr12 59077069 59077286 -85205203 - L1PA16 LINE L1 -116 6038 5805 2222 97 3 13 chr12 59077314 59077614 -85204875 - AluSq SINE Alu -16 297 1 1883 158 30 14 chr12 59077624 59077921 -85204568 - AluJb SINE Alu -10 302 1 2314 86 3 10 chr12 59077930 59078234 -85204255 - AluSp SINE Alu -11 302 1 2308 100 0 0 chr12 59078403 59078692 -85203797 - AluSx SINE Alu -18 294 6 1103 127 57 0 chr12 59079171 59079328 -85203161 - AluSg/x SINE Alu -12 298 133 295 316 65 62 chr12 59079376 59079506 -85202983 + L2 LINE L2 1862 1990 -1324 2161 127 0 0 chr12 59079506 59079814 -85202675 - AluY SINE Alu -3 308 1 295 316 65 62 chr12 59079814 59080069 -85202420 + L2 LINE L2 1990 2248 -1066 628 259 0 7 chr12 59080775 59080914 -85201575 + L2 LINE L2 3161 3298 -15 249 357 167 30 chr12 59081414 59081719 -85200770 - L2 LINE L2 0 3272 2926 2492 82 0 13 chr12 59081754 59082070 -85200419 - AluSq SINE Alu -1 312 1 293 217 17 0 chr12 59082072 59082132 -85200357 - MER5A DNA MER1_type -115 74 14 624 255 153 9 chr12 59082134 59082350 -85200139 - L2 LINE L2 -2962 352 106 2045 133 10 3 chr12 59082736 59083038 -85199451 + AluSx SINE Alu 4 307 -5 444 303 118 24 chr12 59083131 59083342 -85199147 + MIR SINE MIR 2 232 -30 2377 94 3 0 chr12 59083342 59083649 -85198840 + AluSp SINE Alu 1 308 -5 1150 134 6 22 chr12 59083650 59083829 -85198660 + AluSp SINE Alu 134 309 -4 518 110 22 22 chr12 59084394 59084485 -85198004 - MER4A LTR ERV1 -572 92 2 2230 100 3 3 chr12 59084676 59084965 -85197524 - AluSx SINE Alu -23 289 1 2475 97 3 0 chr12 59087072 59087382 -85195107 + AluSp SINE Alu 1 311 -2 1875 155 27 20 chr12 59087584 59087880 -85194609 - AluSx SINE Alu -14 298 1 255 299 15 67 chr12 59088877 59089011 -85193478 + MIR SINE MIR 16 142 -120 1055 154 20 59 chr12 59089051 59089213 -85193276 - MER44D DNA MER2_type -1882 609 442 2337 96 3 0 chr12 59089213 59089515 -85192974 + AluSx SINE Alu 2 304 -8 1055 154 20 59 chr12 59089515 59089549 -85192940 - MER44D DNA MER2_type -2049 442 408 2230 79 19 35 chr12 59089549 59089865 -85192624 + AluY SINE Alu 1 311 0 1055 154 20 59 chr12 59089865 59089920 -85192569 - MER44D DNA MER2_type -2083 408 367 4507 127 71 61 chr12 59089925 59090912 -85191577 + pTR5 LTR ERV1 743 2021 -417 319 250 0 0 chr12 59090913 59090997 -85191492 + LTR30 LTR ERV1 541 624 -98 1635 77 3 4 chr12 59090997 59091239 -85191250 + pTR5 LTR ERV1 49 392 -2046 1181 151 151 17 chr12 59091239 59091478 -85191011 + AluJo SINE Alu 31 301 -11 260 31 0 0 chr12 59091478 59091510 -85190979 - MER44D DNA MER2_type -211 494 463 1746 164 0 48 chr12 59091520 59091830 -85190659 + AluJo SINE Alu 1 295 -17 1174 166 97 0 chr12 59091852 59092069 -85190420 - AluJb SINE Alu -74 238 1 1761 149 11 14 chr12 59092092 59092373 -85190116 - AluJo SINE Alu -32 280 1 531 188 20 0 chr12 59092373 59092474 -85190015 - MER44D DNA MER2_type -236 373 1 1054 108 7 0 chr12 59094002 59094150 -85188339 + FRAM SINE Alu 10 158 -18 306 0 0 0 chr12 59094633 59094667 -85187822 + (TA)n Simple_repeat Simple_repeat 2 35 0 399 98 0 0 chr12 59094668 59094729 -85187760 + (GA)n Simple_repeat Simple_repeat 1 61 0 353 244 89 49 chr12 59094870 59094993 -85187496 - MIR SINE MIR -61 147 20 2329 91 17 0 chr12 59095251 59095547 -85186942 + AluSg SINE Alu 1 301 -9 197 108 27 0 chr12 59095873 59095910 -85186579 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2488 75 0 0 chr12 59098699 59098993 -85183496 - AluSc SINE Alu -15 294 1 2429 81 0 3 chr12 59100215 59100512 -85181977 - AluSc SINE Alu -13 296 1 2246 82 3 21 chr12 59101060 59101380 -85181109 + AluSq SINE Alu 1 315 0 2129 146 0 0 chr12 59101398 59101707 -85180782 + AluSx SINE Alu 1 309 -3 2147 108 18 0 chr12 59101837 59102139 -85180350 + AluSx SINE Alu 1 307 0 621 139 30 0 chr12 59102314 59102415 -85180074 - AluSq/x SINE Alu -180 133 30 2200 114 0 10 chr12 59102530 59102827 -85179662 + AluSx SINE Alu 1 294 -18 214 200 0 73 chr12 59103050 59103105 -85179384 + G-rich Low_complexity Low_complexity 3 53 0 2025 113 33 10 chr12 59103525 59103827 -85178662 - AluSq SINE Alu -4 309 1 * 2483 52 3 0 chr12 59103827 59104133 -85178356 - AluSx SINE Alu -5 307 1 1338 91 115 79 chr12 59104133 59104385 -85178104 + MER4A LTR ERV1 404 664 0 264 267 7 60 chr12 59104944 59105094 -85177395 + G-rich Low_complexity Low_complexity 3 144 0 2385 69 0 7 chr12 59105874 59106180 -85176309 - AluSq SINE Alu -9 304 1 219 36 0 0 chr12 59107231 59107259 -85175230 + (TC)n Simple_repeat Simple_repeat 1 28 0 243 191 103 29 chr12 59107941 59108009 -85174480 + MIR3 SINE MIR 112 184 -24 2310 73 7 0 chr12 59109477 59109777 -85172712 - AluSp SINE Alu -11 302 1 580 131 61 0 chr12 59109785 59109884 -85172605 - FLAM_C SINE Alu -12 131 27 971 196 0 22 chr12 59110040 59110219 -85172270 + FAM SINE Alu 1 175 0 1979 144 0 0 chr12 59110402 59110700 -85171789 - AluSx SINE Alu -14 298 1 2168 94 0 22 chr12 59111074 59111393 -85171096 + AluSx SINE Alu 1 312 0 214 200 0 73 chr12 59111751 59111806 -85170683 + G-rich Low_complexity Low_complexity 3 53 0 2000 118 20 7 chr12 59112226 59112531 -85169958 - AluSp SINE Alu -4 309 1 805 249 24 56 chr12 59113479 59113728 -85168761 + MIR SINE MIR 20 260 -2 198 296 192 0 chr12 59113732 59113857 -85168632 + MIR SINE MIR 74 222 -40 1901 115 28 11 chr12 59113922 59114208 -85168281 + AluSx SINE Alu 3 293 -19 2082 94 3 20 chr12 59114210 59114509 -85167980 + AluSg SINE Alu 4 297 -13 847 117 48 28 chr12 59114509 59114654 -85167835 + AluSg/x SINE Alu 132 279 -31 1502 197 7 7 chr12 59114735 59115040 -85167449 + AluJo SINE Alu 1 305 -7 22 35 0 0 chr12 59115316 59115345 -85167144 + AT_rich Low_complexity Low_complexity 1 29 0 1614 122 0 12 chr12 59115378 59115624 -85166865 + AluSg/x SINE Alu 65 307 -3 850 119 0 0 chr12 59116112 59116230 -85166259 + FLAM_C SINE Alu 13 130 -13 21 36 0 0 chr12 59116421 59116449 -85166040 + AT_rich Low_complexity Low_complexity 1 28 0 2034 128 7 0 chr12 59116593 59116890 -85165599 + AluSx SINE Alu 2 300 -12 298 260 10 0 chr12 59117259 59117330 -85165159 - MIR3 SINE MIR -40 168 96 2101 109 7 0 chr12 59117330 59117623 -85164866 + AluSx SINE Alu 1 295 -17 230 200 19 29 chr12 59118422 59118527 -85163962 + GA-rich Low_complexity Low_complexity 4 107 0 194 0 39 0 chr12 59118720 59118746 -85163743 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 224 351 14 0 chr12 59119459 59119533 -85162956 + L2 LINE L2 2959 3033 -239 2053 131 0 0 chr12 59119621 59119919 -85162570 + AluSx SINE Alu 1 298 -14 299 361 109 0 chr12 59119970 59120089 -85162400 + L2 LINE L2 3136 3267 -5 2293 66 0 16 chr12 59120172 59120476 -85162013 - AluY SINE Alu -12 299 1 195 42 0 0 chr12 59121395 59121419 -85161070 + (CA)n Simple_repeat Simple_repeat 2 25 0 2047 108 0 0 chr12 59121419 59121706 -85160783 + AluSq SINE Alu 1 287 -26 350 180 0 0 chr12 59121970 59122031 -85160458 + Alu SINE Alu 242 302 0 1887 57 0 0 chr12 59122644 59122871 -85159618 + AluSc SINE Alu 1 227 -82 213 39 0 0 chr12 59122881 59122907 -85159582 + (A)n Simple_repeat Simple_repeat 1 26 0 987 155 0 0 chr12 59123061 59123222 -85159267 - AluJo SINE Alu -11 301 141 487 146 55 12 chr12 59125483 59125648 -85156841 + (TG)n Simple_repeat Simple_repeat 1 172 0 205 189 27 0 chr12 59125712 59125749 -85156740 + MIR SINE MIR 117 154 -108 21 0 0 0 chr12 59126781 59126802 -85155687 + AT_rich Low_complexity Low_complexity 1 21 0 386 235 41 31 chr12 59128022 59128120 -85154369 + L2 LINE L2 3211 3309 -4 2156 104 3 25 chr12 59128376 59128694 -85153795 - AluSx SINE Alu -1 311 1 807 109 8 0 chr12 59129456 59129575 -85152914 - AluJo SINE Alu -179 133 14 277 345 9 62 chr12 59129974 59130087 -85152402 + L2 LINE L2 3080 3186 -86 2267 89 0 3 chr12 59133467 59133769 -85148720 + AluSg SINE Alu 1 301 -9 2046 123 36 0 chr12 59133777 59134078 -85148411 + AluSx SINE Alu 1 312 0 1486 164 20 46 chr12 59134088 59134234 -85148255 + AluJo SINE Alu 1 136 -176 2222 87 3 26 chr12 59134234 59134544 -85147945 + AluSp SINE Alu 1 303 -10 1486 164 20 46 chr12 59134544 59134701 -85147788 + AluJo SINE Alu 136 296 -16 225 94 0 0 chr12 59134792 59134824 -85147665 + (GGGGA)n Simple_repeat Simple_repeat 5 36 0 279 316 91 32 chr12 59135172 59135359 -85147130 + L1MC4 LINE L1 7785 7982 -60 1930 136 13 7 chr12 59135594 59135903 -85146586 - AluSx SINE Alu -1 311 1 913 121 0 0 chr12 59135906 59136038 -85146451 - AluSq/x SINE Alu -181 132 1 2312 72 7 0 chr12 59136180 59136486 -85146003 - AluY SINE Alu -3 308 1 181 298 181 11 chr12 59136571 59136665 -85145824 - L3 LINE CR1 -187 1390 1281 595 285 154 78 chr12 59136770 59137269 -85145220 - L3 LINE CR1 -526 1051 515 2094 119 0 0 chr12 59137972 59138266 -85144223 - AluSx SINE Alu -18 294 1 354 244 33 121 chr12 59138454 59138743 -85143746 - L1ME3A LINE L1 -252 5932 5664 1769 153 81 6 chr12 59138751 59139085 -85143404 - MER46B DNA MER2_type -2 234 1 321 337 29 23 chr12 59139175 59139347 -85143142 - L1ME3A LINE L1 -512 5654 5482 592 341 42 14 chr12 59139435 59139549 -85142940 - L1ME3A LINE L1 -813 5333 5224 1628 175 7 0 chr12 59139549 59139841 -85142648 + AluJo SINE Alu 1 294 -18 592 341 42 14 chr12 59139841 59140010 -85142479 - L1ME3A LINE L1 -922 5224 5042 414 267 0 0 chr12 59140217 59140348 -85142141 + G-rich Low_complexity Low_complexity 1 131 0 253 288 24 12 chr12 59140304 59140474 -85142015 + (CGG)n Simple_repeat Simple_repeat 1 172 0 * 493 159 0 112 chr12 59140538 59140645 -85141844 + MER2 DNA MER2_type 1 95 -250 1295 177 50 11 chr12 59140651 59140928 -85141561 + AluJo SINE Alu 6 293 -19 1753 149 0 0 chr12 59142076 59142352 -85140137 + AluSx SINE Alu 1 276 -36 234 0 0 0 chr12 59142352 59142378 -85140111 + (T)n Simple_repeat Simple_repeat 1 26 0 438 295 68 5 chr12 59143334 59143504 -85138985 + L1ME4a LINE L1 5609 5783 -352 480 208 151 38 chr12 59143553 59143649 -85138840 + L1ME4a LINE L1 5875 5959 -162 589 152 98 197 chr12 59143649 59143913 -85138576 - MER8 DNA MER2_type -1 238 1 480 208 151 38 chr12 59143913 59144028 -85138461 + L1ME4a LINE L1 5959 6110 -11 1777 134 7 0 chr12 59144050 59144319 -85138170 - AluSx SINE Alu -24 288 18 1552 186 3 14 chr12 59144352 59144648 -85137841 + AluJb SINE Alu 1 293 -19 1802 132 3 45 chr12 59144653 59144964 -85137525 + AluSx SINE Alu 1 298 -14 783 116 27 0 chr12 59145229 59145341 -85137148 - FLAM_A SINE Alu -10 132 18 2218 115 0 0 chr12 59145612 59145924 -85136565 - AluSx SINE Alu 0 312 1 2884 168 69 22 chr12 59145979 59146600 -85135889 - L1MB8 LINE L1 0 6178 5529 23 33 0 0 chr12 59146705 59146735 -85135754 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 59147148 59147170 -85135319 + AT_rich Low_complexity Low_complexity 1 22 0 2451 59 3 0 chr12 59147370 59147674 -85134815 - AluSq SINE Alu -8 305 1 1864 153 6 10 chr12 59148508 59148821 -85133668 - AluJb SINE Alu 0 312 1 2412 74 0 3 chr12 59149287 59149599 -85132890 + AluY SINE Alu 1 311 0 2041 106 4 0 chr12 59149620 59149894 -85132595 + AluSx SINE Alu 21 295 -17 1734 156 6 16 chr12 59150079 59150394 -85132095 - AluJo SINE Alu 0 312 1 1996 99 3 7 chr12 59150594 59150910 -85131579 + AluSg SINE Alu 1 310 0 352 263 131 69 chr12 59151290 59151404 -85131085 + MIR SINE MIR 71 201 -61 903 146 6 76 chr12 59151404 59151548 -85130941 + FRAM SINE Alu 1 133 -169 1513 175 52 3 chr12 59151548 59151834 -85130655 - AluSx SINE Alu -12 300 1 903 146 6 76 chr12 59151834 59151860 -85130629 + FRAM SINE Alu 133 159 -7 352 263 131 69 chr12 59151860 59151920 -85130569 + MIR SINE MIR 201 256 -6 410 252 126 4 chr12 59152168 59152375 -85130114 - MER5C DNA MER1_type -1 323 2 277 174 0 0 chr12 59152599 59152645 -85129844 + Charlie5 DNA MER1_type 163 208 -2404 * 280 174 0 0 chr12 59152606 59152652 -85129837 - MER3 DNA MER1_type -122 87 42 874 144 8 0 chr12 59153395 59153527 -85128962 - FLAM_C SINE Alu 0 133 1 2108 136 3 0 chr12 59154212 59154507 -85127982 - AluJb SINE Alu -14 298 3 1235 167 17 50 chr12 59154522 59154761 -85127728 + AluJo SINE Alu 73 303 -9 1406 191 75 24 chr12 59155334 59155627 -85126862 + AluJo SINE Alu 1 308 -4 1990 113 11 0 chr12 59155774 59156048 -85126441 - AluSq SINE Alu 0 313 37 1180 156 50 5 chr12 59156353 59156552 -85125937 + MER44D DNA MER2_type 1 208 -497 552 119 0 0 chr12 59156571 59156655 -85125834 + MER44D DNA MER2_type 280 418 -187 1265 131 0 0 chr12 59156655 59156830 -85125659 - AluSp SINE Alu -18 295 121 210 71 0 0 chr12 59156830 59156858 -85125631 + (TTTTC)n Simple_repeat Simple_repeat 5 32 0 2197 133 7 10 chr12 59156859 59157167 -85125322 - AluSg SINE Alu -3 307 1 1883 162 0 3 chr12 59157167 59157463 -85125026 - AluJb SINE Alu -7 305 11 623 150 235 0 chr12 59157470 59157623 -85124866 + MER44D DNA MER2_type 421 609 0 2161 129 13 3 chr12 59158339 59158648 -85123841 - AluSx SINE Alu 0 312 1 2064 147 0 7 chr12 59158897 59159204 -85123285 + AluSx SINE Alu 7 311 -1 2348 104 0 0 chr12 59159664 59159973 -85122516 + AluY SINE Alu 1 309 -2 258 135 0 0 chr12 59160709 59160746 -85121743 - MER2 DNA MER2_type -3 342 306 799 125 0 140 chr12 59160801 59160892 -85121597 - MER2 DNA MER2_type -173 172 122 1329 191 88 7 chr12 59160892 59161175 -85121314 - AluJo SINE Alu -6 306 1 799 125 0 140 chr12 59161175 59161283 -85121206 - MER2 DNA MER2_type -223 122 1 1843 120 120 4 chr12 59161770 59162053 -85120436 - AluSx SINE Alu 0 321 7 896 125 28 0 chr12 59162151 59162295 -85120194 + AluY SINE Alu 1 148 -163 1246 133 5 5 chr12 59162459 59162647 -85119842 + AluSg/x SINE Alu 110 297 -15 2337 84 0 26 chr12 59162689 59162997 -85119492 - AluSc SINE Alu -9 300 1 361 315 0 39 chr12 59163312 59163439 -85119050 - MIR3 SINE MIR -31 177 56 397 316 22 7 chr12 59163506 59163642 -85118847 - MIR SINE MIR -114 148 11 372 314 75 6 chr12 59163702 59163861 -85118628 - MIR3 SINE MIR -20 188 19 192 40 0 0 chr12 59163935 59163960 -85118529 + (TG)n Simple_repeat Simple_repeat 1 25 0 182 250 21 21 chr12 59165111 59165159 -85117330 + L3b LINE CR1 1526 1573 -10 280 280 36 95 chr12 59165468 59165684 -85116805 - MIR SINE MIR -62 200 3 1437 126 23 0 chr12 59166550 59166764 -85115725 - MER20 DNA MER1_type 0 219 1 4542 184 23 2 chr12 59166849 59167843 -85114646 - L1MB7 LINE L1 -11 6173 5158 538 126 0 0 chr12 59167851 59167938 -85114551 - AluSc SINE Alu -9 300 214 1985 165 3 7 chr12 59167940 59168386 -85114103 + AluSx SINE Alu 1 312 0 663 213 12 6 chr12 59168386 59168555 -85113934 + L1M4 LINE L1 3185 3354 -2792 308 221 0 15 chr12 59168554 59168622 -85113867 - L1M4 LINE L1 -5371 1171 1105 * 2393 102 0 6 chr12 59168622 59168936 -85113553 - AluSx SINE Alu 0 312 1 3173 206 93 71 chr12 59169194 59170205 -85112284 - L1M4 LINE L1 -5496 1046 14 382 146 44 36 chr12 59170305 59170375 -85112114 + L1M2 LINE L1 5546 5618 -550 593 121 83 83 chr12 59170375 59170507 -85111982 + FLAM_C SINE Alu 2 133 0 382 146 44 36 chr12 59170507 59170564 -85111925 + L1M2 LINE L1 5618 5673 -495 2351 74 0 3 chr12 59170829 59171135 -85111354 - AluY SINE Alu 0 305 1 1067 166 10 0 chr12 59171923 59172116 -85110373 + L1MA9 LINE L1 5588 5782 -530 1540 170 8 20 chr12 59172116 59172363 -85110126 + AluJb SINE Alu 1 244 -68 2491 80 13 80 chr12 59172363 59172761 -85109728 - MER51B LTR ERV1 -6 371 1 393 164 0 0 chr12 59172762 59172829 -85109660 + AluJb SINE Alu 236 302 0 922 115 19 0 chr12 59172840 59172996 -85109493 + L1MA9 LINE L1 5785 5943 -369 2363 104 7 0 chr12 59173001 59173310 -85109179 + AluSp SINE Alu 1 311 -2 2361 176 16 55 chr12 59173437 59173704 -85108785 + MER66B LTR ERV1 2 241 -245 2604 29 9 35 chr12 59173704 59174020 -85108469 + AluY SINE Alu 3 310 -1 2361 176 16 55 chr12 59174020 59174257 -85108232 + MER66B LTR ERV1 241 486 0 2399 76 0 0 chr12 59174355 59174697 -85107792 - AluY SINE Alu 0 311 1 2061 91 44 11 chr12 59175236 59175357 -85107132 + AluSg SINE Alu 1 117 -194 2620 50 0 0 chr12 59175357 59175660 -85106829 + AluY SINE Alu 1 303 -8 2061 91 44 11 chr12 59175660 59175840 -85106649 + AluSg SINE Alu 117 311 0 2257 118 3 13 chr12 59176160 59176475 -85106014 + AluSx SINE Alu 1 312 0 204 290 0 0 chr12 59177016 59177078 -85105411 + (CCCTAA)n Simple_repeat Simple_repeat 3 64 0 207 69 0 0 chr12 59177090 59177119 -85105370 + (CCCCAG)n Simple_repeat Simple_repeat 2 30 0 559 245 161 0 chr12 59177517 59177672 -85104817 - MER5A DNA MER1_type 0 189 10 2227 108 0 7 chr12 59178020 59178316 -85104173 + AluSx SINE Alu 1 294 -18 373 346 76 20 chr12 59178500 59178803 -85103686 - L2 LINE L2 -353 2961 2642 1122 157 0 28 chr12 59178803 59178981 -85103508 + AluJo SINE Alu 1 173 -139 606 218 0 0 chr12 59178982 59179083 -85103406 - FRAM SINE Alu -44 132 32 437 133 0 0 chr12 59179089 59179149 -85103340 - AluS SINE Alu -248 61 2 1435 259 88 6 chr12 59179331 59179694 -85102795 - MSTD LTR MaLR 0 396 4 216 309 36 48 chr12 59179847 59179995 -85102494 - L2 LINE L2 0 3313 3166 862 206 12 0 chr12 59179995 59180155 -85102334 + FAM SINE Alu 1 162 -13 216 309 36 48 chr12 59180155 59180171 -85102318 - L2 LINE L2 -147 3166 3151 337 384 9 0 chr12 59180207 59180319 -85102170 - L2 LINE L2 -2 3311 3199 404 309 278 21 chr12 59180477 59180862 -85101627 - L2 LINE L2 -340 2974 2491 2351 75 0 0 chr12 59180874 59181176 -85101313 + AluSc SINE Alu 1 302 0 505 272 5 54 chr12 59181208 59181392 -85101097 + L1MC5 LINE L1 7739 7913 -48 1442 316 28 31 chr12 59181427 59181721 -85100768 - L2 LINE L2 -833 2481 2188 1163 130 21 5 chr12 59181721 59181913 -85100576 + L1MC1 LINE L1 6139 6333 0 1442 316 28 31 chr12 59181913 59182229 -85100260 - L2 LINE L2 -1126 2188 1873 207 0 0 0 chr12 59182234 59182257 -85100232 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1587 168 10 41 chr12 59182259 59182550 -85099939 - AluJo SINE Alu -30 282 1 1526 181 31 14 chr12 59182651 59182938 -85099551 + AluJo SINE Alu 1 292 -20 250 298 71 21 chr12 59182958 59183099 -85099390 - L2 LINE L2 -1562 1752 1605 1860 141 28 66 chr12 59183103 59183530 -85098959 + L1MB8 LINE L1 5689 6099 -79 2130 106 47 16 chr12 59183542 59184199 -85098290 - Tigger3(Golem) DNA MER2_type -2 3027 2278 529 206 9 0 chr12 59184190 59184297 -85098192 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 302 242 15 0 chr12 59184299 59184365 -85098124 - Tigger2 DNA MER2_type -10 2708 2642 1490 77 10 0 chr12 59184368 59184563 -85097926 + L1PA5 LINE L1 5958 6154 0 2373 77 0 10 chr12 59184588 59184886 -85097603 + AluY SINE Alu 1 295 -16 962 195 18 0 chr12 59184886 59185055 -85097434 + AluJb SINE Alu 134 305 -7 2483 96 0 0 chr12 59185130 59185442 -85097047 + AluSx SINE Alu 1 312 0 1546 183 21 3 chr12 59185491 59185780 -85096709 + L1MC4 LINE L1 6711 7004 -1038 1903 223 44 29 chr12 59185780 59186095 -85096394 + L1ME1 LINE L1 5630 5939 -227 1918 111 0 0 chr12 59186095 59186339 -85096150 + AluSx SINE Alu 38 281 -31 180 0 0 0 chr12 59186339 59186359 -85096130 + (GAGAA)n Simple_repeat Simple_repeat 1 20 0 1903 223 44 29 chr12 59186359 59186450 -85096039 + L1ME1 LINE L1 5939 6027 -139 2261 155 106 5 chr12 59186450 59186837 -85095652 + MSTB LTR MaLR 1 426 0 1903 223 44 29 chr12 59186837 59186953 -85095536 + L1ME1 LINE L1 6027 6162 -4 366 265 0 0 chr12 59186957 59187048 -85095441 + L1MC4 LINE L1 6915 7080 -803 358 203 0 0 chr12 59187051 59187120 -85095369 + L1MC4a LINE L1 5529 5597 -573 251 255 39 29 chr12 59187120 59187222 -85095267 + L1MC4a LINE L1 5856 5958 -1850 1702 162 16 26 chr12 59187471 59187779 -85094710 + AluJb SINE Alu 1 305 -7 210 71 0 0 chr12 59187779 59187807 -85094682 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 205 324 96 22 chr12 59187825 59187961 -85094528 + L2 LINE L2 2830 2975 -339 1729 134 7 53 chr12 59189218 59189501 -85092988 + AluJo SINE Alu 39 308 -4 255 271 12 163 chr12 59189617 59189875 -85092614 - L2 LINE L2 -839 2475 2257 2151 98 7 3 chr12 59189905 59190212 -85092277 + AluSx SINE Alu 1 308 0 206 133 0 22 chr12 59192840 59192885 -85089604 + (CA)n Simple_repeat Simple_repeat 1 44 0 279 342 83 60 chr12 59193605 59193857 -85088632 + L2 LINE L2 2917 3162 -110 2354 99 0 34 chr12 59193857 59194180 -85088309 - AluSx SINE Alu 0 312 1 2342 96 7 0 chr12 59194180 59194481 -85088008 - AluSx SINE Alu -8 304 1 279 342 83 60 chr12 59194481 59194575 -85087914 + L2 LINE L2 3161 3272 0 2294 102 7 0 chr12 59195134 59195428 -85087061 + AluSx SINE Alu 1 296 -16 657 215 131 63 chr12 59195919 59196110 -85086379 - MIR SINE MIR -12 250 47 7850 17 3 0 chr12 59196444 59197822 -85084667 + L1PA3 LINE L1 4771 6152 -3 207 88 0 0 chr12 59197826 59197860 -85084629 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2264 131 35 48 chr12 59197874 59198309 -85084180 + L1MA8 LINE L1 5863 6291 0 2177 107 10 13 chr12 59198825 59199125 -85083364 + AluSx SINE Alu 2 300 -12 904 129 29 0 chr12 59200053 59200192 -85082297 - FLAM_C SINE Alu 0 143 1 577 224 103 18 chr12 59201826 59201991 -85080498 + MIR SINE MIR 35 213 -49 455 218 102 44 chr12 59202593 59202799 -85079690 + MLT1J1 LTR MaLR 102 319 -127 288 277 43 11 chr12 59204893 59204987 -85077502 - MIR SINE MIR -138 124 28 219 173 0 0 chr12 59206823 59206875 -85075614 + (CAGAGA)n Simple_repeat Simple_repeat 1 52 0 211 200 0 0 chr12 59207952 59207987 -85074502 + (CA)n Simple_repeat Simple_repeat 1 35 0 204 370 30 0 chr12 59208176 59208276 -85074213 + L2 LINE L2 2898 3000 -272 1421 139 0 9 chr12 59208276 59208491 -85073998 - AluJb SINE Alu -15 297 85 201 129 0 0 chr12 59208659 59208690 -85073799 + (GA)n Simple_repeat Simple_repeat 1 31 0 1934 112 0 48 chr12 59208696 59208875 -85073614 - AluSq SINE Alu -1 312 153 2266 42 42 3 chr12 59208875 59209160 -85073329 - AluY SINE Alu -15 296 1 1934 112 0 48 chr12 59209160 59209294 -85073195 - AluSq SINE Alu -160 153 14 254 268 0 42 chr12 59209295 59209366 -85073123 + L2 LINE L2 3205 3272 0 211 217 22 0 chr12 59209481 59209527 -85072962 + (CA)n Simple_repeat Simple_repeat 1 47 0 249 33 0 0 chr12 59210110 59210140 -85072349 + (CA)n Simple_repeat Simple_repeat 2 31 0 306 210 48 0 chr12 59211124 59211186 -85071303 - L2 LINE L2 -7 3306 3242 227 286 0 18 chr12 59211194 59211250 -85071239 - L2 LINE L2 -17 3296 3242 457 287 47 7 chr12 59211253 59211403 -85071086 - MIR SINE MIR -6 256 101 478 227 35 21 chr12 59212351 59212492 -85069997 - MIR SINE MIR 0 262 120 201 74 0 0 chr12 59212898 59212925 -85069564 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 207 214 0 0 chr12 59213501 59213543 -85068946 + (CTA)n Simple_repeat Simple_repeat 2 43 0 261 299 6 19 chr12 59214509 59214666 -85067823 + C-rich Low_complexity Low_complexity 6 160 0 266 318 0 46 chr12 59215171 59215322 -85067167 + GA-rich Low_complexity Low_complexity 4 147 0 2139 109 13 0 chr12 59216771 59217073 -85065416 + AluSx SINE Alu 1 306 -6 1760 125 54 4 chr12 59217187 59217466 -85065023 + AluJo SINE Alu 1 293 -19 1597 215 66 40 chr12 59217473 59217897 -85064592 + L1MD2 LINE L1 5906 6340 -19 1862 115 7 11 chr12 59217914 59218193 -85064296 + AluSx SINE Alu 25 302 -10 451 121 0 0 chr12 59218280 59218346 -85064143 + Alu SINE Alu 241 306 -5 26 74 0 0 chr12 59218374 59218428 -85064061 + AT_rich Low_complexity Low_complexity 1 54 0 220 318 69 83 chr12 59219214 59219431 -85063058 + L3b LINE CR1 1155 1368 -215 690 251 105 0 chr12 59220125 59220316 -85062173 + MIR SINE MIR 2 212 -50 206 304 0 0 chr12 59220667 59220723 -85061766 - MIR3 SINE MIR 0 208 153 262 191 0 32 chr12 59220724 59220787 -85061702 + MER5B DNA MER1_type 1 61 -117 2175 103 0 13 chr12 59220789 59220925 -85061564 + AluSx SINE Alu 1 137 -175 2626 7 0 20 chr12 59220925 59221231 -85061258 + AluYa5 SINE Alu 1 300 -11 2175 103 0 13 chr12 59221231 59221394 -85061095 + AluSx SINE Alu 137 296 -16 392 303 0 0 chr12 59221397 59221486 -85061003 - L1MC4 LINE L1 -1340 6702 6614 368 333 0 0 chr12 59221408 59221498 -85060991 + L1MC4 LINE L1 6614 6703 -1339 * 286 227 21 135 chr12 59221498 59221555 -85060934 - MER5B DNA MER1_type -53 125 63 2326 77 0 0 chr12 59221555 59221853 -85060636 - AluSg SINE Alu -12 298 1 286 227 21 135 chr12 59221853 59221936 -85060553 - MER5B DNA MER1_type -115 63 1 326 247 11 54 chr12 59221936 59222029 -85060460 - MIR3 SINE MIR -48 160 72 564 243 119 6 chr12 59223338 59223515 -85058974 + MIR3 SINE MIR 3 199 -9 282 29 0 0 chr12 59225187 59225222 -85057267 + (TG)n Simple_repeat Simple_repeat 2 36 0 275 306 60 37 chr12 59227290 59227424 -85055065 - MIR SINE MIR -46 216 80 526 93 0 0 chr12 59227528 59227603 -85054886 + Alu SINE Alu 232 306 -5 221 312 64 18 chr12 59228721 59228830 -85053659 + MIR SINE MIR 1 114 -148 2259 88 3 0 chr12 59228846 59229142 -85053347 - AluSg SINE Alu -13 297 1 2067 112 13 7 chr12 59229228 59229532 -85052957 - AluSq SINE Alu -7 306 1 1395 164 39 29 chr12 59229682 59229963 -85052526 - AluJo SINE Alu -20 292 9 536 237 56 10 chr12 59230183 59230381 -85052108 + MER58 DNA MER1_type 1 2420 0 186 296 92 41 chr12 59231271 59231369 -85051120 + L2 LINE L2 3210 3312 -1 2199 102 6 16 chr12 59233026 59233339 -85049150 - AluSx SINE Alu -2 310 1 269 286 12 12 chr12 59234569 59234653 -85047836 + G-rich Low_complexity Low_complexity 4 87 0 33 43 0 0 chr12 59235708 59235755 -85046734 + GC_rich Low_complexity Low_complexity 1 47 0 24 53 0 0 chr12 59235835 59235873 -85046616 + GC_rich Low_complexity Low_complexity 1 38 0 236 272 65 11 chr12 59236971 59237063 -85045426 - L2 LINE L2 -8 3305 3209 407 268 122 38 chr12 59237345 59237558 -85044931 + L1MC4 LINE L1 7593 7823 -219 1077 114 17 6 chr12 59237598 59237773 -85044716 - MER41C LTR ERV1 0 554 378 1903 128 0 11 chr12 59237773 59238055 -85044434 + AluSq SINE Alu 1 279 -34 2388 75 0 0 chr12 59238055 59238363 -85044126 - AluSx SINE Alu -4 308 1 1905 153 6 10 chr12 59239197 59239510 -85042979 - AluJb SINE Alu 0 312 1 2453 70 0 3 chr12 59239975 59240287 -85042202 + AluY SINE Alu 1 311 0 2060 106 4 0 chr12 59240308 59240582 -85041907 + AluSx SINE Alu 21 295 -17 1728 168 7 10 chr12 59240766 59241075 -85041414 - AluJo SINE Alu -4 308 1 2064 98 0 7 chr12 59241275 59241592 -85040897 + AluSg SINE Alu 1 310 0 1597 69 5 14 chr12 59241779 59241995 -85040494 - AluSc SINE Alu -94 215 2 577 167 246 0 chr12 59242016 59242154 -85040335 - MER41C LTR ERV1 -163 391 220 1292 105 37 0 chr12 59242192 59242382 -85040107 - AluSp SINE Alu -6 307 111 426 137 0 55 chr12 59242384 59242457 -85040032 + AluS SINE Alu 232 300 -9 348 125 47 0 chr12 59242458 59242522 -85039967 + L1MB3 LINE L1 6055 6121 -62 2167 97 0 42 chr12 59243687 59243832 -85038657 + AluSx SINE Alu 1 128 -184 2131 74 7 10 chr12 59243832 59244128 -85038361 + AluSg SINE Alu 1 295 -15 2167 97 0 42 chr12 59244128 59244292 -85038197 + AluSx SINE Alu 128 297 -15 233 244 23 47 chr12 59244390 59244476 -85038013 - MIR3 SINE MIR -43 165 82 441 227 45 0 chr12 59244658 59244746 -85037743 - MSTC LTR MaLR -333 95 4 878 216 12 0 chr12 59245047 59245218 -85037271 + FAM SINE Alu 1 173 -2 302 365 70 15 chr12 59245259 59245459 -85037030 - L2 LINE L2 -2 3311 3101 428 317 85 18 chr12 59245536 59245914 -85036575 - L2 LINE L2 -345 2969 2491 2231 75 0 0 chr12 59245926 59246228 -85036261 + AluSc SINE Alu 1 302 0 506 276 33 48 chr12 59246234 59246444 -85036045 + L1MC5 LINE L1 7707 7913 -48 1243 326 42 19 chr12 59246479 59246757 -85035732 - L2 LINE L2 -833 2481 2211 1169 139 34 10 chr12 59246757 59246965 -85035524 + L1MC1 LINE L1 6121 6333 0 1243 326 42 19 chr12 59246965 59247281 -85035208 - L2 LINE L2 -1103 2211 1873 207 0 0 0 chr12 59247286 59247309 -85035180 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1493 168 10 41 chr12 59247311 59247602 -85034887 - AluJo SINE Alu -30 282 1 1424 183 31 14 chr12 59247703 59247992 -85034497 + AluJo SINE Alu 1 294 -18 223 338 56 0 chr12 59248010 59248152 -85034337 - L2 LINE L2 -1562 1752 1603 1863 141 28 66 chr12 59248155 59248582 -85033907 + L1MB8 LINE L1 5689 6099 -79 2139 106 47 16 chr12 59248594 59249251 -85033238 - Tigger3(Golem) DNA MER2_type -2 3027 2278 540 206 9 0 chr12 59249242 59249349 -85033140 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 315 242 15 0 chr12 59249351 59249417 -85033072 - Tigger2 DNA MER2_type 0 2718 2652 1510 77 10 0 chr12 59249420 59249615 -85032874 + L1PA5 LINE L1 5958 6154 0 2249 77 0 10 chr12 59249640 59249938 -85032551 + AluY SINE Alu 1 295 -16 896 195 18 0 chr12 59249938 59250107 -85032382 + AluJb SINE Alu 134 305 -7 2357 96 0 0 chr12 59250182 59250494 -85031995 + AluSx SINE Alu 1 312 0 1588 190 17 0 chr12 59250543 59250832 -85031657 + L1MC4 LINE L1 6711 7004 -1038 1928 223 44 29 chr12 59250832 59251147 -85031342 + L1ME1 LINE L1 5630 5939 -227 1811 111 0 0 chr12 59251147 59251391 -85031098 + AluSx SINE Alu 38 281 -31 180 0 0 0 chr12 59251391 59251411 -85031078 + (GAGAA)n Simple_repeat Simple_repeat 1 20 0 1928 223 44 29 chr12 59251411 59251502 -85030987 + L1ME1 LINE L1 5939 6027 -139 2347 145 106 5 chr12 59251502 59251889 -85030600 + MSTB LTR MaLR 1 426 0 1928 223 44 29 chr12 59251889 59252005 -85030484 + L1ME1 LINE L1 6027 6162 -4 376 265 0 0 chr12 59252009 59252100 -85030389 + L1MC4 LINE L1 6915 7080 -803 357 215 0 13 chr12 59252103 59252182 -85030307 + L1MC4a LINE L1 5529 5606 -564 256 255 39 29 chr12 59252172 59252274 -85030215 + L1MC4a LINE L1 5856 5958 -1850 * 1601 162 16 26 chr12 59252523 59252831 -85029658 + AluJb SINE Alu 1 305 -7 210 71 0 0 chr12 59252831 59252859 -85029630 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 186 324 96 22 chr12 59252877 59253013 -85029476 + L2 LINE L2 2829 2974 -339 1615 139 7 52 chr12 59254270 59254557 -85027932 + AluJo SINE Alu 39 312 0 237 271 12 163 chr12 59254669 59254927 -85027562 - L2 LINE L2 -839 2475 2257 2031 98 7 3 chr12 59254957 59255264 -85027225 + AluSx SINE Alu 1 308 0 206 133 0 22 chr12 59257892 59257937 -85024552 + (CA)n Simple_repeat Simple_repeat 1 44 0 233 347 84 55 chr12 59258657 59258908 -85023581 + L2 LINE L2 2917 3159 -113 2359 99 0 34 chr12 59258908 59259231 -85023258 - AluSx SINE Alu 0 312 1 2351 96 7 0 chr12 59259231 59259532 -85022957 - AluSx SINE Alu -9 303 1 233 347 84 55 chr12 59259532 59259626 -85022863 + L2 LINE L2 3460 3272 0 2299 98 7 3 chr12 59260185 59260480 -85022009 + AluSx SINE Alu 1 296 -16 613 225 131 63 chr12 59260970 59261161 -85021328 - MIR SINE MIR -12 250 47 7472 17 3 0 chr12 59261495 59262873 -85019616 + L1PA3 LINE L1 4771 6152 -3 207 88 0 0 chr12 59262877 59262911 -85019578 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2138 131 35 48 chr12 59262925 59263360 -85019129 + L1MA8 LINE L1 5863 6291 0 2191 107 10 13 chr12 59263876 59264176 -85018313 + AluSx SINE Alu 2 300 -12 904 129 29 0 chr12 59265103 59265242 -85017247 - FLAM_C SINE Alu 0 143 1 531 224 103 18 chr12 59266876 59267041 -85015448 + MIR SINE MIR 35 213 -49 498 272 73 15 chr12 59267643 59267849 -85014640 + MLT1J1 LTR MaLR 102 319 -127 266 277 43 11 chr12 59269943 59270037 -85012452 - MIR SINE MIR -138 124 28 219 173 0 0 chr12 59271873 59271925 -85010564 + (CAGAGA)n Simple_repeat Simple_repeat 1 52 0 211 200 0 0 chr12 59273002 59273037 -85009452 + (CA)n Simple_repeat Simple_repeat 1 35 0 223 338 32 51 chr12 59273226 59273326 -85009163 + L2 LINE L2 2898 2995 -277 1512 139 0 9 chr12 59273326 59273541 -85008948 - AluJb SINE Alu -15 297 85 223 338 32 51 chr12 59273541 59273597 -85008892 + L2 LINE L2 2995 3051 -221 201 129 0 0 chr12 59273709 59273740 -85008749 + (GA)n Simple_repeat Simple_repeat 1 31 0 2058 112 0 48 chr12 59273746 59273925 -85008564 - AluSq SINE Alu -1 312 153 2405 42 42 3 chr12 59273925 59274210 -85008279 - AluY SINE Alu -15 296 1 2058 112 0 48 chr12 59274210 59274344 -85008145 - AluSq SINE Alu -160 153 14 255 268 0 42 chr12 59274345 59274416 -85008073 + L2 LINE L2 3205 3272 0 211 217 22 0 chr12 59274531 59274577 -85007912 + (CA)n Simple_repeat Simple_repeat 1 47 0 249 33 0 0 chr12 59275160 59275190 -85007299 + (CA)n Simple_repeat Simple_repeat 2 31 0 306 210 48 0 chr12 59276174 59276236 -85006253 - L2 LINE L2 -7 3306 3242 225 286 0 18 chr12 59276244 59276300 -85006189 - L2 LINE L2 -17 3296 3242 457 287 47 7 chr12 59276303 59276453 -85006036 - MIR SINE MIR -6 256 101 483 213 43 28 chr12 59277401 59277542 -85004947 - MIR SINE MIR 0 262 120 201 74 0 0 chr12 59277948 59277975 -85004514 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 207 214 0 0 chr12 59278551 59278593 -85003896 + (CTA)n Simple_repeat Simple_repeat 2 43 0 236 306 6 19 chr12 59279559 59279716 -85002773 + C-rich Low_complexity Low_complexity 6 160 0 266 318 0 46 chr12 59280221 59280372 -85002117 + GA-rich Low_complexity Low_complexity 4 147 0 2268 109 13 0 chr12 59281821 59282123 -85000366 + AluSx SINE Alu 1 306 -6 1875 125 54 4 chr12 59282237 59282516 -84999973 + AluJo SINE Alu 1 293 -19 1595 215 66 40 chr12 59282523 59282947 -84999542 + L1MD2 LINE L1 5906 6340 -19 1975 115 7 11 chr12 59282964 59283243 -84999246 + AluSx SINE Alu 25 302 -10 423 121 0 0 chr12 59283330 59283396 -84999093 + Alu SINE Alu 241 306 -5 26 74 0 0 chr12 59283424 59283478 -84999011 + AT_rich Low_complexity Low_complexity 1 54 0 210 313 69 83 chr12 59284264 59284481 -84998008 + L3b LINE CR1 1155 1368 -215 691 251 105 0 chr12 59285175 59285366 -84997123 + MIR SINE MIR 2 212 -50 227 293 0 0 chr12 59285718 59285774 -84996715 - MIR3 SINE MIR 0 208 153 292 194 0 16 chr12 59285774 59285836 -84996653 + MER5B DNA MER1_type 1 61 -117 2342 88 0 33 chr12 59285838 59285974 -84996515 + AluSx SINE Alu 1 140 -172 2736 7 3 20 chr12 59285974 59286279 -84996210 + AluYa5 SINE Alu 1 300 -11 2342 88 0 33 chr12 59286279 59286448 -84996041 + AluSx SINE Alu 140 296 -16 246 203 38 63 chr12 59286452 59286531 -84995958 + MIR SINE MIR 185 261 -1 26 0 0 0 chr12 59286532 59286558 -84995931 + AT_rich Low_complexity Low_complexity 1 26 0 1486 72 11 0 chr12 59287184 59287364 -84995125 + AluSp SINE Alu 1 182 -131 592 119 0 0 chr12 59287366 59287450 -84995039 + AluSg/x SINE Alu 214 297 -12 2039 128 3 3 chr12 59287464 59287746 -84994743 - AluSx SINE Alu -26 286 5 2143 131 3 7 chr12 59288553 59288859 -84993630 - AluSg1 SINE Alu -3 306 2 478 343 60 0 chr12 59288860 59289026 -84993463 - MIR SINE MIR -71 191 16 2259 77 13 32 chr12 59289350 59289662 -84992827 + AluSp SINE Alu 1 306 -7 2223 94 20 10 chr12 59289662 59289961 -84992528 + AluSc SINE Alu 1 302 -7 1643 185 17 11 chr12 59290464 59290751 -84991738 - AluJo SINE Alu -23 289 1 1740 136 9 88 chr12 59291739 59292056 -84990433 - AluJb SINE Alu -20 292 1 1843 165 0 14 chr12 59292369 59292660 -84989829 + AluJb SINE Alu 1 287 -25 2700 45 3 0 chr12 59292672 59292981 -84989508 + AluY SINE Alu 1 310 -1 201 213 43 0 chr12 59292987 59293034 -84989455 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 1959 158 0 0 chr12 59293428 59293720 -84988769 - AluSg SINE Alu -18 292 1 564 169 0 0 chr12 59293740 59293829 -84988660 - AluS SINE Alu -219 93 5 2251 117 0 7 chr12 59294636 59294944 -84987545 - AluSg1 SINE Alu -3 306 1 222 37 0 0 chr12 59295374 59295401 -84987088 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 230 130 19 56 chr12 59295481 59295535 -84986954 - AluJo SINE Alu -166 136 85 1768 160 8 0 chr12 59295635 59295903 -84986586 + AluJo SINE Alu 24 293 -19 205 307 27 13 chr12 59298158 59298233 -84984256 + MIR SINE MIR 177 252 -10 321 279 76 0 chr12 59298251 59298330 -84984159 + MIR SINE MIR 62 146 -62 300 244 184 60 chr12 59299514 59299682 -84982807 + MIR SINE MIR 8 196 -66 2319 108 7 0 chr12 59299771 59300068 -84982421 - AluSq SINE Alu -14 299 1 284 285 52 23 chr12 59303423 59303595 -84978894 + L1MC4a LINE L1 4744 4920 -1226 * 448 155 60 12 chr12 59303593 59303677 -84978812 + L1PA16 LINE L1 5998 6085 -81 251 53 158 0 chr12 59303678 59303716 -84978773 - Alu SINE Alu -259 44 1 28 0 0 0 chr12 59303802 59303830 -84978659 + AT_rich Low_complexity Low_complexity 1 28 0 496 147 92 28 chr12 59303850 59303951 -84978538 + FLAM_A SINE Alu 22 115 -196 1682 159 31 59 chr12 59303951 59304085 -84978404 + AluJo SINE Alu 1 137 -175 2500 65 0 3 chr12 59304085 59304405 -84978084 + AluY SINE Alu 1 319 0 1682 159 31 59 chr12 59304405 59304419 -84978070 + AluJo SINE Alu 137 150 -162 2355 75 10 3 chr12 59304419 59304714 -84977775 + AluSq SINE Alu 1 297 -16 1682 159 31 59 chr12 59304714 59304884 -84977605 + AluJo SINE Alu 150 312 0 410 343 30 26 chr12 59304895 59305163 -84977326 + L1MC4a LINE L1 5327 5595 -526 1908 113 7 7 chr12 59305322 59305596 -84976893 + AluSq SINE Alu 37 310 -3 673 296 116 25 chr12 59305596 59306069 -84976420 + L1MC4a LINE L1 5606 6121 0 2534 84 3 0 chr12 59306092 59306400 -84976089 + AluSp SINE Alu 1 309 -4 246 315 96 39 chr12 59306429 59306607 -84975882 + L2 LINE L2 1804 1991 -1323 393 185 0 0 chr12 59306655 59306720 -84975769 + MLT1D LTR MaLR 1 65 -440 2323 89 0 0 chr12 59306721 59307002 -84975487 + AluSx SINE Alu 2 282 -30 243 29 29 0 chr12 59307002 59307037 -84975452 + (CAA)n Simple_repeat Simple_repeat 1 180 0 1243 137 0 0 chr12 59307037 59307219 -84975270 + AluSp SINE Alu 132 313 0 2179 154 44 42 chr12 59307223 59307289 -84975200 + MLT1D LTR MaLR 52 116 -389 2056 136 7 0 chr12 59307289 59307583 -84974906 + AluSx SINE Alu 1 296 -16 2179 154 44 42 chr12 59307583 59307969 -84974520 + MLT1D LTR MaLR 116 505 0 746 299 179 40 chr12 59307972 59308277 -84974212 + L2 LINE L2 2080 2341 -973 2096 136 0 0 chr12 59308277 59308609 -84973880 + AluSx SINE Alu 1 332 0 746 299 179 40 chr12 59308609 59308849 -84973640 + L2 LINE L2 2341 2703 -611 933 194 38 0 chr12 59308891 59309051 -84973438 - AluJb SINE Alu -12 300 135 1724 186 0 13 chr12 59309051 59309363 -84973126 - AluJo SINE Alu -4 308 1 180 111 0 0 chr12 59309712 59309739 -84972750 + (A)n Simple_repeat Simple_repeat 1 27 0 2268 130 0 0 chr12 59309801 59310102 -84972387 + AluSx SINE Alu 1 301 -11 181 371 54 36 chr12 59310255 59310476 -84972013 + L2 LINE L2 2750 2974 -340 209 280 40 27 chr12 59310633 59310708 -84971781 - L2 LINE L2 -652 2662 2587 208 225 0 0 chr12 59312229 59312269 -84970220 + C-rich Low_complexity Low_complexity 2 41 0 641 238 148 11 chr12 59313576 59313765 -84968724 - MIR SINE MIR -1 261 47 934 182 7 0 chr12 59315506 59315660 -84966829 - FRAM SINE Alu -11 155 1 237 281 7 46 chr12 59317057 59317210 -84965279 + CT-rich Low_complexity Low_complexity 5 151 0 445 261 216 14 chr12 59317978 59318196 -84964293 + MIR SINE MIR 1 262 0 319 306 72 9 chr12 59318233 59318344 -84964145 - MIR SINE MIR -106 156 39 * 431 264 83 21 chr12 59318312 59318505 -84963984 + L2 LINE L2 2771 2975 -339 222 128 0 43 chr12 59318652 59318699 -84963790 + L2 LINE L2 3269 3313 0 541 281 158 22 chr12 59319273 59319501 -84962988 + MIR SINE MIR 3 261 -1 348 184 194 29 chr12 59320078 59320181 -84962308 - MIR3 SINE MIR -4 204 85 366 23 0 0 chr12 59320635 59320678 -84961811 + (TG)n Simple_repeat Simple_repeat 2 44 0 29 0 0 0 chr12 59321396 59321425 -84961064 + GC_rich Low_complexity Low_complexity 1 29 0 2400 93 0 3 chr12 59322708 59323019 -84959470 + AluY SINE Alu 1 310 -1 2145 100 38 3 chr12 59324213 59324503 -84957986 - AluSx SINE Alu -12 300 1 2520 68 0 7 chr12 59324670 59324977 -84957512 - AluSg1 SINE Alu -4 305 1 35 19 0 19 chr12 59328357 59328389 -84954100 + AT_rich Low_complexity Low_complexity 1 33 -19 2211 110 0 26 chr12 59328389 59328698 -84953791 + AluSx SINE Alu 2 302 -10 35 19 0 19 chr12 59328698 59328718 -84953771 + AT_rich Low_complexity Low_complexity 33 52 0 748 174 14 58 chr12 59328872 59329010 -84953479 - FLAM_C SINE Alu -1 132 1 180 336 36 27 chr12 59329090 59329200 -84953289 + L2 LINE L2 2243 2353 -961 2428 100 0 0 chr12 59329276 59329577 -84952912 - AluSg SINE Alu -9 301 1 4310 166 88 39 chr12 59329597 59329789 -84952700 - L1MC3 LINE L1 -7 7778 7597 2036 160 3 0 chr12 59329789 59330089 -84952400 - AluJo SINE Alu -11 301 1 4310 166 88 39 chr12 59330089 59330115 -84952374 - L1MC3 LINE L1 -188 7597 7574 2374 89 6 13 chr12 59330115 59330429 -84952060 - AluSp SINE Alu -1 312 1 4310 166 88 39 chr12 59330429 59330742 -84951747 - L1MC3 LINE L1 -211 7574 7278 1567 188 7 36 chr12 59330742 59331046 -84951443 - AluJb SINE Alu -17 295 1 4310 166 88 39 chr12 59331046 59331207 -84951282 - L1MC3 LINE L1 -507 7278 7126 1257 189 92 25 chr12 59331207 59331488 -84951001 + AluJb SINE Alu 1 300 -12 4310 166 88 39 chr12 59331488 59331843 -84950646 - L1MC3 LINE L1 -659 7126 6677 22 35 0 0 chr12 59331854 59331883 -84950606 + AT_rich Low_complexity Low_complexity 1 29 0 322 289 167 28 chr12 59331964 59332144 -84950345 + MIR SINE MIR 58 262 0 182 314 81 57 chr12 59332263 59332387 -84950102 + L2 LINE L2 2611 2737 -577 269 274 89 37 chr12 59332416 59332686 -84949803 - L1ME4a LINE L1 -161 5960 5677 2062 132 7 0 chr12 59332728 59333016 -84949473 - AluSx SINE Alu -22 290 1 743 174 8 0 chr12 59333020 59333141 -84949348 - FLAM_C SINE Alu -10 133 12 1552 174 36 30 chr12 59333144 59333448 -84949041 - AluJo SINE Alu -6 306 1 2007 105 46 29 chr12 59333451 59333757 -84948732 - AluSx SINE Alu -1 311 1 3245 132 61 56 chr12 59333757 59333903 -84948586 + MER4E LTR ERV1 119 263 -516 2257 110 0 10 chr12 59333903 59334213 -84948276 + AluSq SINE Alu 1 307 -6 3245 132 61 56 chr12 59334213 59334573 -84947916 + MER4E LTR ERV1 263 620 -159 2180 110 7 3 chr12 59334573 59334864 -84947625 + AluSx SINE Alu 3 294 -18 867 192 20 0 chr12 59334873 59335024 -84947465 + FRAM SINE Alu 1 154 -12 339 25 0 0 chr12 59335027 59335067 -84947422 + (TA)n Simple_repeat Simple_repeat 1 40 0 3245 132 61 56 chr12 59335067 59335203 -84947286 + MER4E LTR ERV1 628 779 0 1106 168 0 26 chr12 59335207 59335397 -84947092 - AluJo SINE Alu -127 185 1 194 320 111 44 chr12 59335531 59335712 -84946777 + L2 LINE L2 2455 2647 -667 275 216 0 0 chr12 59335837 59335888 -84946601 - L2 LINE L2 0 3313 3263 211 295 109 72 chr12 59335918 59336111 -84946378 + L2 LINE L2 2849 3048 -224 2105 126 3 3 chr12 59336435 59336744 -84945745 - AluSx SINE Alu -1 311 3 1835 161 6 58 chr12 59336857 59337043 -84945446 - AluSx SINE Alu 0 312 118 2251 105 3 10 chr12 59337043 59337357 -84945132 - AluSx SINE Alu 0 312 1 2223 138 3 0 chr12 59337357 59337662 -84944827 - AluSx SINE Alu -6 306 1 1845 116 3 104 chr12 59337667 59338002 -84944487 - AluSx SINE Alu -11 301 1 1835 161 6 58 chr12 59338002 59338137 -84944352 - AluSx SINE Alu -197 115 1 180 0 0 0 chr12 59338201 59338221 -84944268 + (TA)n Simple_repeat Simple_repeat 2 21 0 1962 143 3 0 chr12 59338371 59338657 -84943832 + AluSx SINE Alu 1 287 -25 207 0 0 0 chr12 59338662 59338685 -84943804 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1322 99 0 11 chr12 59338694 59338876 -84943613 + AluY SINE Alu 132 311 0 901 166 5 16 chr12 59338876 59339069 -84943420 - LOR1-int LTR ERV1 -3763 4357 4167 1817 143 0 52 chr12 59340081 59340388 -84942101 + AluSx SINE Alu 1 291 -21 2137 109 13 22 chr12 59340392 59340704 -84941785 + AluSx SINE Alu 4 312 0 24 0 0 0 chr12 59341694 59341718 -84940771 + AT_rich Low_complexity Low_complexity 1 24 0 1908 147 27 14 chr12 59341832 59342125 -84940364 - AluSq SINE Alu -16 297 1 2281 105 7 3 chr12 59342133 59342437 -84940052 - AluSx SINE Alu -7 305 1 2308 93 13 0 chr12 59342861 59343162 -84939327 - AluSq SINE Alu -8 305 1 2262 97 0 42 chr12 59343174 59343483 -84939006 - AluSq SINE Alu -17 296 1 470 290 67 50 chr12 59343929 59344157 -84938332 + L2 LINE L2 2755 2990 -282 727 181 47 0 chr12 59344157 59344284 -84938205 - FLAM_C SINE Alu 0 133 1 470 290 67 50 chr12 59344284 59344352 -84938137 + L2 LINE L2 2990 3055 -217 383 204 0 82 chr12 59344353 59344451 -84938038 - L1MC4 LINE L1 -1339 6703 6614 312 231 141 0 chr12 59344435 59344513 -84937976 - L1MC4 LINE L1 -1339 6703 6615 * 1556 137 0 5 chr12 59344513 59344732 -84937757 - AluSg/x SINE Alu -22 288 71 2044 98 0 0 chr12 59344732 59344985 -84937504 - AluSx SINE Alu -20 292 38 312 296 0 31 chr12 59344985 59345015 -84937474 + L1MC4 LINE L1 6678 6708 -1334 1251 82 13 0 chr12 59345033 59345191 -84937298 - AluSg/x SINE Alu -16 294 135 2265 125 3 0 chr12 59345195 59345506 -84936983 - AluSq SINE Alu -1 312 1 1843 141 10 35 chr12 59345506 59345818 -84936671 - AluSx SINE Alu -7 305 1 2134 125 27 0 chr12 59345841 59346136 -84936353 - AluSp SINE Alu -10 303 1 262 350 75 0 chr12 59346141 59346221 -84936268 + L2 LINE L2 3141 3226 -46 207 100 0 0 chr12 59346631 59346661 -84935828 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2538 68 0 7 chr12 59346813 59347120 -84935369 - AluY SINE Alu -6 305 1 262 311 19 10 chr12 59349879 59349982 -84932507 + CT-rich Low_complexity Low_complexity 4 107 0 183 129 0 0 chr12 59350756 59350787 -84931702 + (A)n Simple_repeat Simple_repeat 1 31 0 231 36 0 0 chr12 59350973 59351001 -84931488 + (TA)n Simple_repeat Simple_repeat 2 29 0 220 319 18 53 chr12 59351572 59351685 -84930804 - L2 LINE L2 -8 3264 3156 * 440 294 83 29 chr12 59351665 59351869 -84930620 - MIR SINE MIR -41 221 7 1309 184 116 4 chr12 59352143 59352410 -84930079 + AluJb SINE Alu 1 297 -15 2235 92 7 7 chr12 59352412 59352706 -84929783 + AluSc SINE Alu 2 295 -14 1037 122 0 0 chr12 59352708 59352847 -84929642 + AluSq/x SINE Alu 3 141 -171 2286 89 0 25 chr12 59352847 59353161 -84929328 + AluY SINE Alu 1 306 -5 1642 185 27 10 chr12 59353177 59353475 -84929014 - AluJo SINE Alu -7 305 3 429 335 66 11 chr12 59354274 59354456 -84928033 - MIR SINE MIR -51 211 20 2236 124 10 54 chr12 59354674 59354730 -84927759 + L1MA5 LINE L1 5909 5966 -334 1735 169 6 48 chr12 59354730 59355043 -84927446 + AluJb SINE Alu 1 300 -12 2463 77 3 0 chr12 59355043 59355339 -84927150 + AluSp SINE Alu 1 298 -15 2236 124 10 54 chr12 59355339 59355568 -84926921 + L1MA5 LINE L1 5965 6174 -126 2291 102 10 0 chr12 59355568 59355871 -84926618 + AluY SINE Alu 2 307 -4 2236 124 10 54 chr12 59355871 59355993 -84926496 + L1MA5 LINE L1 6174 6300 0 193 167 17 17 chr12 59356431 59356491 -84925998 + T-rich Low_complexity Low_complexity 1 60 0 2148 91 0 14 chr12 59358518 59358805 -84923684 - AluSq SINE Alu -6 307 25 2324 104 0 3 chr12 59358815 59359122 -84923367 - AluSg SINE Alu -4 306 1 416 125 0 0 chr12 59359126 59359198 -84923291 - LTR56 LTR ERV1 -365 80 9 876 155 0 0 chr12 59359212 59359341 -84923148 - FLAM_C SINE Alu 0 133 5 1199 112 32 52 chr12 59359347 59359597 -84922892 - LTR49-int LTR ERV1 -1787 4544 4300 606 152 26 11 chr12 59359597 59359734 -84922755 + L1M4 LINE L1 4629 4765 -1381 1149 184 35 105 chr12 59360174 59360323 -84922166 + AluJb SINE Alu 5 122 -190 185 0 40 0 chr12 59360323 59360348 -84922141 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1149 184 35 105 chr12 59360348 59360513 -84921976 + AluJb SINE Alu 122 297 -15 2146 108 18 0 chr12 59360670 59360972 -84921517 - AluSx SINE Alu 0 307 1 2095 151 0 0 chr12 59361102 59361413 -84921076 - AluSx SINE Alu -1 311 1 250 159 0 32 chr12 59361445 59361508 -84920981 - AluSp/q SINE Alu -2 301 247 304 87 8 19 chr12 59361814 59361876 -84920613 + Alu SINE Alu 252 302 0 183 42 0 0 chr12 59362193 59362217 -84920272 + (CA)n Simple_repeat Simple_repeat 1 24 0 909 156 106 0 chr12 59362348 59362508 -84919981 + AluSg/x SINE Alu 136 312 0 371 276 57 32 chr12 59362558 59362681 -84919808 + MIR3 SINE MIR 7 132 -76 2402 77 0 3 chr12 59362776 59363073 -84919416 - AluSg SINE Alu -14 296 1 2073 128 10 7 chr12 59363097 59363394 -84919095 - AluSx SINE Alu -14 298 1 2247 109 0 16 chr12 59364108 59364288 -84918201 - AluSx SINE Alu 0 312 138 2241 95 20 10 chr12 59364288 59364592 -84917897 - AluSp SINE Alu -6 307 1 2247 109 0 16 chr12 59364592 59364723 -84917766 - AluSx SINE Alu -174 138 6 1854 157 17 3 chr12 59365398 59365685 -84916804 - AluJb SINE Alu -21 291 1 681 241 15 92 chr12 59366239 59366501 -84915988 - MER102b DNA MER1_type -4 337 96 1075 73 44 0 chr12 59366505 59366635 -84915854 + AluSq/x SINE Alu 1 137 -171 2234 94 34 0 chr12 59366635 59366932 -84915557 + AluSc SINE Alu 1 307 -2 245 98 24 0 chr12 59368953 59368994 -84913495 + (TC)n Simple_repeat Simple_repeat 2 43 0 284 48 24 0 chr12 59368994 59369036 -84913453 + (CA)n Simple_repeat Simple_repeat 1 43 0 387 0 0 0 chr12 59369392 59369435 -84913054 + (TG)n Simple_repeat Simple_repeat 2 44 0 2530 49 7 7 chr12 59370497 59370802 -84911687 - AluY SINE Alu -6 305 1 1645 167 3 42 chr12 59370804 59371110 -84911379 - AluJb SINE Alu -16 296 3 2076 137 3 3 chr12 59371121 59371428 -84911061 - AluSx SINE Alu -5 307 1 2211 112 30 74 chr12 59371430 59371448 -84911041 + Tigger3(Golem) DNA MER2_type 2331 2348 -681 2488 82 0 0 chr12 59371448 59371741 -84910748 - AluSc SINE Alu -16 293 1 2211 112 30 74 chr12 59371741 59371931 -84910558 + Tigger3(Golem) DNA MER2_type 2348 2545 -484 1602 181 3 31 chr12 59371931 59372055 -84910434 + AluJb SINE Alu 2 128 -184 225 0 48 48 chr12 59372055 59372097 -84910392 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1602 181 3 31 chr12 59372097 59372292 -84910197 + AluJb SINE Alu 128 312 0 2211 112 30 74 chr12 59372292 59372348 -84910141 + Tigger3(Golem) DNA MER2_type 2545 2602 -427 2293 82 0 3 chr12 59372348 59372670 -84909819 + AluSg SINE Alu 2 322 0 2211 112 30 74 chr12 59372670 59372825 -84909664 + Tigger3(Golem) DNA MER2_type 2602 2762 -267 2331 105 0 3 chr12 59372825 59373131 -84909358 - AluSg SINE Alu -5 305 1 423 0 0 0 chr12 59373132 59373179 -84909310 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2245 96 0 0 chr12 59373179 59373461 -84909028 - AluSx SINE Alu -30 282 1 2241 98 3 3 chr12 59373463 59373759 -84908730 - AluSg SINE Alu -14 296 1 2211 112 30 74 chr12 59373759 59373801 -84908688 + Tigger3(Golem) DNA MER2_type 2762 2781 -248 352 191 82 0 chr12 59373844 59373954 -84908535 - AluSc SINE Alu -2 297 179 2837 16 0 0 chr12 59374460 59374765 -84907724 - AluY SINE Alu -6 305 1 223 239 0 0 chr12 59375499 59375545 -84906944 + CT-rich Low_complexity Low_complexity 2 47 0 918 224 72 5 chr12 59376036 59376259 -84906230 + MIR SINE MIR 15 252 -10 2392 88 0 3 chr12 59377608 59377903 -84904586 - AluSx SINE Alu -18 294 1 2308 113 3 0 chr12 59378074 59378375 -84904114 + AluSp SINE Alu 1 302 -11 234 0 0 0 chr12 59379079 59379105 -84903384 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2560 60 0 25 chr12 59379910 59380228 -84902261 + AluY SINE Alu 1 310 -1 1624 183 27 20 chr12 59380244 59380545 -84901944 - AluJo SINE Alu -7 305 3 429 335 66 11 chr12 59381344 59381526 -84900963 - MIR SINE MIR -51 211 20 2236 124 10 54 chr12 59381744 59381800 -84900689 + L1MA5 LINE L1 5909 5966 -334 1753 175 0 48 chr12 59381800 59382115 -84900374 + AluJb SINE Alu 1 300 -12 2463 77 3 0 chr12 59382115 59382411 -84900078 + AluSp SINE Alu 1 298 -15 2236 124 10 54 chr12 59382411 59382640 -84899849 + L1MA5 LINE L1 5965 6174 -126 2277 106 10 0 chr12 59382640 59382943 -84899546 + AluY SINE Alu 2 307 -4 2236 124 10 54 chr12 59382943 59383065 -84899424 + L1MA5 LINE L1 6174 6300 0 193 167 17 17 chr12 59383503 59383563 -84898926 + T-rich Low_complexity Low_complexity 1 60 0 2451 86 0 13 chr12 59385092 59385407 -84897082 + AluY SINE Alu 1 311 0 2484 69 3 7 chr12 59385560 59385864 -84896625 - AluY SINE Alu -6 305 3 262 311 19 10 chr12 59388921 59389024 -84893465 + CT-rich Low_complexity Low_complexity 4 107 0 183 129 0 0 chr12 59389798 59389829 -84892660 + (A)n Simple_repeat Simple_repeat 1 31 0 231 36 0 0 chr12 59390015 59390043 -84892446 + (TA)n Simple_repeat Simple_repeat 2 29 0 220 319 18 53 chr12 59390614 59390727 -84891762 - L2 LINE L2 -8 3264 3156 * 440 294 83 29 chr12 59390707 59390911 -84891578 - MIR SINE MIR -41 221 7 1309 184 116 4 chr12 59391185 59391452 -84891037 + AluJb SINE Alu 1 297 -15 2235 92 7 7 chr12 59391454 59391748 -84890741 + AluSc SINE Alu 2 295 -14 1090 101 0 0 chr12 59391750 59391889 -84890600 + AluSq/x SINE Alu 3 141 -172 2331 110 0 3 chr12 59391889 59392198 -84890291 + AluSc SINE Alu 1 308 -1 2247 118 14 0 chr12 59392459 59392756 -84889733 - AluSx SINE Alu -11 301 1 583 186 40 117 chr12 59392828 59393075 -84889414 - MER112 DNA MER1_type -31 229 2 1200 131 11 5 chr12 59393165 59393356 -84889133 - AluSq SINE Alu -2 311 120 423 167 33 11 chr12 59393356 59393446 -84889043 + MIR SINE MIR 138 229 -33 1230 211 98 11 chr12 59395524 59395789 -84886700 + AluJo SINE Alu 11 298 -14 2269 111 13 0 chr12 59396301 59396607 -84885882 - AluSx SINE Alu -2 310 1 1318 135 87 0 chr12 59397122 59397329 -84885160 - AluSx SINE Alu -87 225 1 2284 92 3 0 chr12 59397904 59398197 -84884292 - AluSx SINE Alu -18 294 1 289 217 17 0 chr12 59398199 59398259 -84884230 - MER5A DNA MER1_type -115 74 14 635 250 153 9 chr12 59398261 59398477 -84884012 - L2 LINE L2 -2962 352 106 2061 129 10 3 chr12 59398863 59399165 -84883324 + AluSx SINE Alu 4 307 -5 444 303 118 24 chr12 59399258 59399469 -84883020 + MIR SINE MIR 2 232 -30 2579 45 0 16 chr12 59399469 59399777 -84882712 + AluY SINE Alu 1 303 -8 240 117 39 78 chr12 59400063 59400183 -84882306 + AluSp/q SINE Alu 211 327 0 377 217 26 148 chr12 59400286 59400362 -84882127 + MLT-int LTR MaLR 1290 1374 -361 2475 73 0 19 chr12 59400362 59400676 -84881813 - AluY SINE Alu -1 310 3 377 217 26 148 chr12 59400676 59400732 -84881757 + MLT-int LTR MaLR 1374 1396 -339 2207 82 4 4 chr12 59400732 59401036 -84881453 - AluY SINE Alu 0 304 1 377 217 26 148 chr12 59401036 59401090 -84881399 + MLT-int LTR MaLR 1396 1455 -280 1827 127 23 0 chr12 59401107 59401367 -84881122 - AluSx SINE Alu -4 308 43 233 347 112 6 chr12 59401369 59401539 -84880950 + L2 LINE L2 803 990 -2324 562 204 30 45 chr12 59401592 59401724 -84880765 + FLAM_C SINE Alu 2 131 -2 1061 91 0 0 chr12 59401735 59401867 -84880622 + AluSq/x SINE Alu 1 132 -180 1710 106 26 0 chr12 59401972 59402199 -84880290 + AluSx SINE Alu 58 290 -22 216 67 0 0 chr12 59402199 59402229 -84880260 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 243 197 0 0 chr12 59402230 59402283 -84880206 - Alu SINE Alu -20 146 108 2045 120 35 0 chr12 59402309 59402593 -84879896 - AluSg SINE Alu -16 294 1 2401 89 3 19 chr12 59402744 59403059 -84879430 - AluSq SINE Alu -3 310 1 1711 154 95 0 chr12 59403326 59403599 -84878890 - AluSx SINE Alu -13 299 1 201 39 0 0 chr12 59403613 59403639 -84878850 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 914 186 0 0 chr12 59403639 59403784 -84878705 - FRAM SINE Alu -31 145 1 314 294 90 94 chr12 59403787 59403868 -84878621 + L3 LINE CR1 1154 1234 -343 803 136 0 57 chr12 59403868 59404008 -84878481 + FLAM_A SINE Alu 1 132 -1 1805 182 0 3 chr12 59404017 59404346 -84878143 + AluJo SINE Alu 1 312 0 314 294 90 94 chr12 59404346 59404455 -84878034 + L3 LINE CR1 1242 1353 -224 822 199 73 63 chr12 59404877 59405049 -84877440 - L1MC5 LINE L1 -504 7457 7279 2342 113 0 0 chr12 59405049 59405359 -84877130 - AluSg SINE Alu 0 310 1 822 199 73 63 chr12 59405359 59405472 -84877017 - L1MC5 LINE L1 -682 7279 7169 1182 160 87 9 chr12 59405473 59405692 -84876797 + AluJb SINE Alu 1 236 -76 24 0 0 29 chr12 59405697 59405714 -84876775 + AT_rich Low_complexity Low_complexity 1 17 -17 1863 72 30 0 chr12 59405714 59405950 -84876539 + AluSp SINE Alu 1 243 -70 24 0 0 29 chr12 59405950 59405967 -84876522 + AT_rich Low_complexity Low_complexity 17 34 0 403 193 50 0 chr12 59406025 59406144 -84876345 - L1 LINE L1 -2972 3174 3050 269 138 0 92 chr12 59406258 59406323 -84876166 + AluSp SINE Alu 242 300 -2 546 177 21 0 chr12 59406827 59406923 -84875566 - FRAM SINE Alu -78 98 1 2013 123 18 0 chr12 59407204 59407577 -84874912 + AluSx SINE Alu 1 378 0 180 0 0 0 chr12 59408481 59408501 -84873988 + (T)n Simple_repeat Simple_repeat 1 20 0 330 294 118 38 chr12 59414717 59414766 -84867723 + L3 LINE CR1 206 250 -1327 2165 87 21 0 chr12 59414766 59415055 -84867434 - AluSc SINE Alu -13 296 2 330 294 118 38 chr12 59415055 59415216 -84867273 + L3 LINE CR1 250 433 -1144 2134 220 89 11 chr12 59415228 59415788 -84866701 - MER90 LTR ERV1 -10 604 1 193 351 0 0 chr12 59416174 59416231 -84866258 + L3 LINE CR1 875 931 -646 243 228 18 0 chr12 59416258 59416315 -84866174 - L2 LINE L2 -5 3308 3251 217 281 44 36 chr12 59416362 59416525 -84865964 + L3 LINE CR1 1038 1284 -293 2056 75 41 17 chr12 59416577 59416872 -84865617 - AluY SINE Alu -9 302 1 636 232 155 5 chr12 59416874 59417068 -84865421 - MIR SINE MIR -8 254 32 2292 82 0 16 chr12 59417128 59417433 -84865056 - AluSx SINE Alu -12 300 1 2153 75 24 0 chr12 59421261 59421553 -84860936 - AluSg SINE Alu -11 299 1 225 276 49 49 chr12 59423151 59423274 -84859215 - L2 LINE L2 -14 3258 3136 2468 52 3 7 chr12 59424181 59424491 -84857998 + AluY SINE Alu 1 309 -2 1032 82 0 0 chr12 59425943 59426077 -84856412 - AluSg/x SINE Alu -15 294 161 691 201 117 84 chr12 59426475 59426651 -84855838 + AluSg SINE Alu 2 190 -120 2024 119 0 0 chr12 59426651 59426928 -84855561 + AluSq SINE Alu 1 277 -36 691 201 117 84 chr12 59426928 59426990 -84855499 + AluSg SINE Alu 190 248 -62 1005 196 70 0 chr12 59426990 59427024 -84855465 + AluJo SINE Alu 85 115 -197 186 43 0 0 chr12 59427024 59427047 -84855442 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1005 196 70 0 chr12 59427047 59427211 -84855278 + AluJo SINE Alu 115 297 -15 1793 118 45 28 chr12 59427211 59427500 -84854989 + AluSx SINE Alu 1 294 -18 2151 101 3 3 chr12 59427539 59427836 -84854653 - AluSx SINE Alu -15 297 1 2016 110 28 0 chr12 59427836 59428126 -84854363 - AluSx SINE Alu -14 298 1 1549 136 0 46 chr12 59428129 59428409 -84854080 - AluJo SINE Alu -17 295 29 1777 151 75 75 chr12 59428409 59428820 -84853669 + LTR47A LTR ERVL 42 452 0 403 218 13 0 chr12 59428863 59428941 -84853548 + MER21B LTR ERV1 334 412 -451 609 189 63 31 chr12 59428977 59429104 -84853385 + FLAM_C SINE Alu 1 131 -2 205 196 71 107 chr12 59429564 59429676 -84852813 + MIR SINE MIR 124 231 -31 * 730 278 29 33 chr12 59429635 59429688 -84852801 - MIR SINE MIR -5 257 205 1836 77 39 87 chr12 59429688 59429999 -84852490 - AluSx SINE Alu -16 296 1 730 278 29 33 chr12 59429999 59430190 -84852299 - MIR SINE MIR -57 205 14 275 48 0 24 chr12 59431305 59431347 -84851142 + (TG)n Simple_repeat Simple_repeat 1 41 0 507 170 75 0 chr12 59434131 59434225 -84848264 - L1MC1 LINE L1 -241 6092 5992 1109 100 96 72 chr12 59434229 59434478 -84848011 + L1MC1 LINE L1 6079 6333 0 2092 102 10 16 chr12 59434488 59434791 -84847698 + AluSq SINE Alu 1 301 -12 690 124 19 0 chr12 59435416 59435521 -84846968 - FLAM_C SINE Alu -33 110 4 1898 139 7 17 chr12 59435578 59435880 -84846609 - AluSq SINE Alu -14 299 1 2028 124 7 0 chr12 59435908 59436207 -84846282 - AluSg SINE Alu -9 301 1 1197 122 14 47 chr12 59436208 59436421 -84846068 - AluJb SINE Alu -12 300 95 1192 141 32 5 chr12 59436522 59436742 -84845747 - AluSg SINE Alu -84 226 1 1452 200 47 26 chr12 59436742 59437082 -84845407 + MLT1B-int LTR MaLR 1389 1735 0 1852 179 47 36 chr12 59437085 59437471 -84845018 + MLT1B LTR MaLR 1 390 0 235 294 43 0 chr12 59437472 59437564 -84844925 + L1MB5 LINE L1 4226 4321 -1825 226 86 0 0 chr12 59437567 59437602 -84844887 - LTR23 LTR ERV1 -2 435 401 1642 96 0 8 chr12 59437604 59437844 -84844645 - AluSp SINE Alu -2 311 74 584 90 13 167 chr12 59438000 59438060 -84844429 - LTR56 LTR ERV1 -305 140 72 2016 96 0 14 chr12 59438060 59438351 -84844138 - AluSx SINE Alu -1 311 25 584 90 13 167 chr12 59438351 59438369 -84844120 - LTR56 LTR ERV1 -373 72 53 2271 92 0 3 chr12 59438369 59438675 -84843814 - AluSg SINE Alu -5 305 1 584 90 13 167 chr12 59438675 59438751 -84843738 - LTR56 LTR ERV1 -392 53 9 861 163 0 0 chr12 59438769 59438898 -84843591 - FLAM_C SINE Alu 0 133 5 1020 111 37 51 chr12 59438904 59439120 -84843369 - LTR49-int LTR ERV1 -1787 4544 4332 2030 196 48 7 chr12 59439120 59439602 -84842887 + L1MB5 LINE L1 4603 5093 -1053 2132 120 0 3 chr12 59439660 59439960 -84842529 - AluSx SINE Alu -13 299 1 306 156 0 16 chr12 59439963 59440027 -84842462 + L1MB5 LINE L1 5089 5151 -995 499 212 10 10 chr12 59440027 59440126 -84842363 + AluJo SINE Alu 122 220 -92 1573 138 21 102 chr12 59440165 59440490 -84841999 + AluJo SINE Alu 1 299 -13 1820 173 19 48 chr12 59440490 59440620 -84841869 + L1MB5 LINE L1 5665 5797 -377 1707 159 0 24 chr12 59440620 59440745 -84841744 + AluJo SINE Alu 15 141 -171 2209 96 3 0 chr12 59440745 59441038 -84841451 + AluSc SINE Alu 1 294 -15 1707 159 0 24 chr12 59441038 59441208 -84841281 + AluJo SINE Alu 141 303 -9 1820 173 19 48 chr12 59441208 59441484 -84841005 + L1MB5 LINE L1 5797 6061 -113 1035 117 0 7 chr12 59441487 59441632 -84840857 + AluSq/x SINE Alu 7 150 -162 691 264 17 34 chr12 59441644 59441883 -84840606 + HERV16 LTR ERVL 2640 2874 -2122 1979 128 0 0 chr12 59441896 59442178 -84840311 - AluSx SINE Alu -30 282 1 935 152 12 6 chr12 59442178 59442342 -84840147 - AluJo SINE Alu -11 301 137 543 254 7 14 chr12 59442352 59442494 -84839995 + LTR16A LTR ERVL 297 437 -13 1965 145 0 3 chr12 59442564 59442874 -84839615 - AluSg SINE Alu -1 309 1 2066 138 0 6 chr12 59443128 59443440 -84839049 - AluSx SINE Alu -2 310 1 657 181 23 23 chr12 59443460 59443593 -84838896 - AluJo SINE Alu -178 134 2 498 132 0 13 chr12 59443615 59443691 -84838798 - AluS SINE Alu -235 76 2 329 296 41 0 chr12 59443694 59443792 -84838697 - L2 LINE L2 -1879 1435 1334 189 378 0 11 chr12 59443992 59444082 -84838407 - MIR SINE MIR -4 258 170 2296 88 0 0 chr12 59444082 59444378 -84838111 + AluSq SINE Alu 1 296 -17 9311 31 7 187 chr12 59444407 59446094 -84836395 - SVA Other Other 0 1386 4 691 201 117 84 chr12 59446354 59446530 -84835959 + AluSg SINE Alu 2 190 -120 2024 119 0 0 chr12 59446530 59446807 -84835682 + AluSq SINE Alu 1 277 -36 691 201 117 84 chr12 59446807 59446869 -84835620 + AluSg SINE Alu 190 248 -62 1005 196 70 0 chr12 59446869 59446903 -84835586 + AluJo SINE Alu 85 115 -197 186 43 0 0 chr12 59446903 59446926 -84835563 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1005 196 70 0 chr12 59446926 59447090 -84835399 + AluJo SINE Alu 115 297 -15 1828 118 45 24 chr12 59447090 59447378 -84835111 + AluSx SINE Alu 1 294 -18 2213 104 0 0 chr12 59447417 59447714 -84834775 - AluSx SINE Alu -15 297 1 455 153 194 10 chr12 59447742 59447840 -84834649 + FLAM_C SINE Alu 28 143 0 203 245 217 19 chr12 59447899 59448005 -84834484 + MIR SINE MIR 65 191 -71 183 80 0 0 chr12 59449401 59449426 -84833063 + (TC)n Simple_repeat Simple_repeat 1 25 0 250 245 0 0 chr12 59450368 59450421 -84832068 - L2 LINE L2 -11 3302 3250 205 195 24 0 chr12 59451522 59451563 -84830926 + (TG)n Simple_repeat Simple_repeat 1 42 0 1761 140 53 0 chr12 59453647 59453932 -84828557 + AluJb SINE Alu 1 300 -12 1845 96 4 15 chr12 59453941 59454201 -84828288 + AluSp SINE Alu 57 313 0 1967 131 37 0 chr12 59454781 59454902 -84827587 + AluSx SINE Alu 1 116 -196 195 69 0 0 chr12 59454902 59454931 -84827558 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1967 131 37 0 chr12 59454931 59455106 -84827383 + AluSx SINE Alu 116 308 -4 2490 37 17 0 chr12 59455108 59455405 -84827084 + AluY SINE Alu 3 304 -7 1849 146 20 3 chr12 59456178 59456473 -84826016 + AluJo SINE Alu 1 300 -12 232 324 77 50 chr12 59458281 59458437 -84824052 - L3 LINE CR1 -3 1574 1409 1688 130 58 14 chr12 59458437 59458713 -84823776 - AluJo SINE Alu -2 310 23 232 324 77 50 chr12 59458713 59458778 -84823711 - L3 LINE CR1 -168 1409 1347 2028 89 10 24 chr12 59458779 59459070 -84823419 + AluSc SINE Alu 1 287 -22 1319 220 122 42 chr12 59459070 59459114 -84823375 - L1MC4 LINE L1 -100 7942 7903 189 0 0 0 chr12 59459114 59459135 -84823354 + (CA)n Simple_repeat Simple_repeat 2 22 0 1319 220 122 42 chr12 59459135 59459517 -84822972 - L1MC4 LINE L1 -139 7903 7482 1056 169 30 0 chr12 59459517 59459683 -84822806 - AluSg/x SINE Alu -12 298 128 424 244 33 11 chr12 59459695 59459785 -84822704 - L1MC4 LINE L1 -1337 6705 6614 399 264 0 22 chr12 59459699 59459790 -84822699 + L1MC4 LINE L1 6614 6702 -1340 * 735 71 10 0 chr12 59459790 59459888 -84822601 - AluSp/q SINE Alu -17 296 198 847 144 0 0 chr12 59459889 59460007 -84822482 - AluJb SINE Alu -186 126 9 1586 200 288 19 chr12 59460017 59460308 -84822181 - L1MC4a LINE L1 -416 7392 7180 760 186 17 85 chr12 59460308 59460485 -84822004 + FRAM SINE Alu 1 165 -1 2492 90 0 6 chr12 59460485 59460796 -84821693 + AluSg SINE Alu 1 309 -1 1586 200 288 19 chr12 59460796 59461083 -84821406 - L1MC4a LINE L1 -627 7181 6657 2433 87 3 0 chr12 59463045 59463344 -84819145 + AluSp SINE Alu 1 300 -13 534 324 24 19 chr12 59464367 59464590 -84817899 + MIR SINE MIR 23 244 -18 1880 99 16 120 chr12 59465696 59466070 -84816419 + MER1B DNA MER1_type 3 337 0 2476 65 0 20 chr12 59466497 59466803 -84815686 + AluY SINE Alu 1 300 -11 2284 115 10 13 chr12 59467314 59467628 -84814861 - AluSq SINE Alu 0 313 1 2135 99 25 3 chr12 59467681 59467965 -84814524 - AluSg SINE Alu -20 290 1 272 349 41 24 chr12 59468142 59468311 -84814178 - L2 LINE L2 -168 3104 2933 1821 123 0 8 chr12 59468356 59468616 -84813873 + AluSx SINE Alu 45 302 -10 256 333 40 66 chr12 59471028 59471116 -84811373 - L2 LINE L2 -4 3309 3220 2322 93 0 10 chr12 59471116 59471417 -84811072 - AluSx SINE Alu -14 298 1 256 333 40 66 chr12 59471417 59471526 -84810963 - L2 LINE L2 -93 3220 3117 2259 92 27 3 chr12 59471599 59471893 -84810596 - AluSq SINE Alu -12 301 1 2353 107 0 0 chr12 59472654 59472954 -84809535 + AluSx SINE Alu 1 300 -12 2300 105 10 0 chr12 59472954 59473259 -84809230 + AluSq SINE Alu 1 308 -5 245 250 73 81 chr12 59474845 59474981 -84807508 - MIR SINE MIR -2 260 126 1053 179 0 98 chr12 59474981 59475215 -84807274 + AluJb SINE Alu 1 211 -101 256 213 62 0 chr12 59476854 59476934 -84805555 + (CTCG)n Simple_repeat Simple_repeat 1 85 0 251 222 19 102 chr12 59478851 59478959 -84803530 - MER50-int LTR ERV1 -4033 3172 3074 1918 179 7 0 chr12 59480041 59480343 -84802146 + AluJb SINE Alu 1 304 -8 870 128 8 0 chr12 59480419 59480544 -84801945 + FLAM_C SINE Alu 9 134 -9 266 337 41 0 chr12 59480544 59480642 -84801847 + MIR SINE MIR 47 148 -114 1682 110 38 24 chr12 59480746 59481038 -84801451 + MER47A DNA MER2_type 71 366 0 2454 85 0 0 chr12 59481141 59481436 -84801053 + AluSc SINE Alu 2 296 -13 2481 74 0 29 chr12 59481633 59481944 -84800545 + AluSq SINE Alu 2 303 -10 2307 107 0 3 chr12 59482371 59482669 -84799820 + AluSx SINE Alu 1 297 -15 371 215 11 21 chr12 59483917 59484010 -84798479 - Tigger5 DNA MER2_type 0 2323 2232 340 195 13 39 chr12 59484032 59484109 -84798380 - AluJ/FLAM SINE Alu -217 85 11 2338 85 0 3 chr12 59487428 59487722 -84794767 + AluY SINE Alu 1 293 -18 1089 0 0 0 chr12 59487726 59487844 -84794645 + AluYa5/8 SINE Alu 194 311 0 1089 170 166 26 chr12 59488111 59488376 -84794113 + AluJo SINE Alu 1 302 0 253 239 99 72 chr12 59488667 59488953 -84793536 + MLT1J LTR MaLR 1 293 -218 2078 139 19 7 chr12 59488953 59489262 -84793227 - AluSq SINE Alu 0 313 1 2270 110 10 0 chr12 59489271 59489571 -84792918 - AluSx SINE Alu -9 303 1 562 215 68 12 chr12 59489571 59489734 -84792755 - AluSp SINE Alu -13 300 129 805 159 31 37 chr12 59489838 59489954 -84792535 + Tigger3(Golem) DNA MER2_type 2621 2736 -292 2307 111 0 3 chr12 59489954 59490261 -84792228 - AluSg SINE Alu -4 306 1 387 0 0 0 chr12 59490262 59490305 -84792184 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2190 103 4 0 chr12 59490305 59490586 -84791903 - AluSx SINE Alu -30 282 1 805 159 31 37 chr12 59490586 59490629 -84791860 + Tigger3(Golem) DNA MER2_type 2734 2782 -246 216 0 0 0 chr12 59490649 59490673 -84791816 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 1449 157 0 59 chr12 59490687 59490992 -84791497 - AluSx SINE Alu -25 287 1 1326 229 127 55 chr12 59491625 59492137 -84790352 - L2 LINE L2 -663 2651 2103 772 179 78 0 chr12 59492138 59492317 -84790172 + L1MB7 LINE L1 5715 5907 -277 3133 142 27 8 chr12 59492594 59493108 -84789381 + MER1A DNA MER1_type 4 527 0 310 371 13 0 chr12 59493136 59493287 -84789202 - L2 LINE L2 -542 2772 2620 875 208 42 9 chr12 59494588 59494800 -84787689 + MER20 DNA MER1_type 1 219 0 1067 226 70 4 chr12 59495049 59495306 -84787183 - L1MC3 LINE L1 -971 6814 6541 383 282 56 97 chr12 59495306 59495789 -84786700 + L1ME4a LINE L1 5579 6031 -90 2194 120 0 7 chr12 59497132 59497431 -84785058 + AluSx SINE Alu 1 297 -15 2283 112 0 0 chr12 59497431 59497726 -84784763 + AluSx SINE Alu 1 295 -17 936 90 0 22 chr12 59497737 59497871 -84784618 + FLAM_C SINE Alu 1 131 -2 2043 145 14 3 chr12 59497877 59498174 -84784315 + AluJb SINE Alu 1 300 -12 2148 75 41 20 chr12 59498221 59498515 -84783974 + AluSq SINE Alu 1 300 -13 225 242 15 0 chr12 59499230 59499296 -84783193 + C-rich Low_complexity Low_complexity 1 67 0 228 135 0 0 chr12 59503492 59503529 -84778960 + (A)n Simple_repeat Simple_repeat 1 37 0 2054 89 4 0 chr12 59505901 59506159 -84776330 - AluSc SINE Alu -14 295 37 190 384 23 23 chr12 59507010 59507187 -84775302 + L2 LINE L2 2877 3053 -219 2227 83 0 36 chr12 59507258 59507560 -84774929 - AluSg SINE Alu -19 291 1 1945 154 0 49 chr12 59507690 59507891 -84774598 - AluJb SINE Alu -3 309 100 2049 101 14 7 chr12 59507891 59508187 -84774302 + AluSx SINE Alu 1 298 -14 1917 115 26 0 chr12 59508187 59508490 -84773999 + AluSp SINE Alu 7 316 0 1945 154 0 49 chr12 59508490 59508611 -84773878 - AluJb SINE Alu -210 102 1 471 197 60 8 chr12 59508739 59508856 -84773633 - L2 LINE L2 -3 3310 3188 202 125 0 50 chr12 59508908 59508948 -84773541 + (CCCTG)n Simple_repeat Simple_repeat 1 38 0 198 0 0 0 chr12 59508998 59509020 -84773469 + (CA)n Simple_repeat Simple_repeat 2 23 0 350 239 11 68 chr12 59509208 59509384 -84773105 + AluSq SINE Alu 121 286 -17 516 207 8 33 chr12 59509416 59509537 -84772952 - FLAM_C SINE Alu -23 120 3 488 154 86 34 chr12 59509667 59509784 -84772705 - L2 LINE L2 -3 3310 3188 202 125 0 50 chr12 59509836 59509876 -84772613 + (CCCTG)n Simple_repeat Simple_repeat 1 38 0 198 0 0 0 chr12 59509925 59509947 -84772542 + (CA)n Simple_repeat Simple_repeat 2 23 0 432 0 0 0 chr12 59509988 59510036 -84772453 + (CA)n Simple_repeat Simple_repeat 2 49 0 1043 179 10 15 chr12 59510405 59510601 -84771888 - AluSg/x SINE Alu -3 307 113 2352 88 7 0 chr12 59510941 59511236 -84771253 - AluSp SINE Alu -16 297 1 2577 64 0 0 chr12 59511296 59511594 -84770895 - AluY SINE Alu -13 298 1 261 261 0 14 chr12 59511764 59511833 -84770656 - HAL1b LINE L1 -450 898 831 363 320 112 30 chr12 59512048 59512391 -84770098 + L2 LINE L2 2302 2760 -554 2249 114 10 0 chr12 59512391 59512697 -84769792 + AluSx SINE Alu 1 309 -3 363 320 112 30 chr12 59512697 59512785 -84769704 + L2 LINE L2 2760 2839 -475 2199 119 3 3 chr12 59512891 59513194 -84769295 + AluSx SINE Alu 5 307 -5 2009 93 85 4 chr12 59513201 59513471 -84769018 + AluSx SINE Alu 1 292 -20 200 176 0 0 chr12 59513731 59513765 -84768724 + (CGG)n Simple_repeat Simple_repeat 3 36 0 218 348 0 0 chr12 59513785 59513877 -84768612 + CT-rich Low_complexity Low_complexity 2 93 0 783 177 0 0 chr12 59514462 59514592 -84767897 - FLAM_A SINE Alu -3 130 1 1949 138 47 14 chr12 59514608 59514904 -84767585 - AluJb SINE Alu -6 306 1 2341 93 0 19 chr12 59514914 59515226 -84767263 - AluSx SINE Alu -6 306 1 342 187 44 87 chr12 59515578 59515670 -84766819 + AluS SINE Alu 5 70 -233 490 224 27 20 chr12 59515771 59515918 -84766571 + Charlie2 DNA MER1_type 2430 2577 -285 2677 37 0 0 chr12 59515940 59516239 -84766250 + AluY SINE Alu 1 299 -12 2473 99 0 0 chr12 59516239 59516551 -84765938 + AluSx SINE Alu 1 312 0 1034 200 0 0 chr12 59516557 59516737 -84765752 + AluJb SINE Alu 120 299 -13 306 70 0 0 chr12 59516737 59516780 -84765709 + MER101 LTR ERV1 432 474 0 304 283 0 37 chr12 59516780 59516885 -84765604 + MLT1K LTR MaLR 101 268 -320 2062 97 34 0 chr12 59517026 59517293 -84765196 - AluSq SINE Alu -37 276 1 1736 189 0 14 chr12 59517356 59517642 -84764847 + AluJo SINE Alu 1 282 -30 423 221 0 0 chr12 59517643 59517729 -84764760 - AluSg/x SINE Alu -22 288 203 2209 107 23 13 chr12 59517830 59518140 -84764349 + AluSp SINE Alu 1 313 0 22 0 0 0 chr12 59518215 59518237 -84764252 + AT_rich Low_complexity Low_complexity 1 22 0 429 111 16 0 chr12 59519236 59519299 -84763190 + AluS SINE Alu 2 65 -247 548 189 47 31 chr12 59519362 59519489 -84763000 + L2 LINE L2 3139 3267 -5 403 267 46 8 chr12 59520295 59520426 -84762063 - MIR SINE MIR -113 149 14 194 339 0 0 chr12 59521359 59521424 -84761065 + L2 LINE L2 2918 2982 -290 329 257 18 46 chr12 59522523 59522632 -84759857 + MIR SINE MIR 28 133 -129 7024 99 50 2 chr12 59522903 59523929 -84758560 - HSMAR1 DNA Mariner -173 1114 40 2224 113 7 0 chr12 59524250 59524551 -84757938 - AluSx SINE Alu -9 303 1 442 256 94 6 chr12 59524559 59524719 -84757770 - MIR SINE MIR -12 250 77 2196 103 14 3 chr12 59524760 59525050 -84757439 - AluSx SINE Alu -19 293 1 298 268 14 0 chr12 59526058 59526129 -84756360 - MIR SINE MIR -59 149 78 324 265 95 27 chr12 59527781 59527928 -84754561 + MIR3 SINE MIR 17 173 -35 310 123 35 0 chr12 59528323 59528380 -84754109 - AluJ/FLAM SINE Alu -243 59 1 340 240 31 0 chr12 59528387 59528483 -84754006 + MIR SINE MIR 48 146 -62 456 335 34 0 chr12 59529124 59529300 -84753189 + MIR SINE MIR 12 193 -69 4220 131 22 22 chr12 59529740 59530657 -84751832 + L1MA1 LINE L1 5122 6035 -267 2247 127 0 3 chr12 59531005 59531313 -84751176 + AluSx SINE Alu 1 307 -5 2009 93 85 4 chr12 59531320 59531590 -84750899 + AluSx SINE Alu 1 292 -20 200 176 0 0 chr12 59531850 59531884 -84750605 + (CGG)n Simple_repeat Simple_repeat 3 36 0 218 348 0 0 chr12 59531904 59531996 -84750493 + CT-rich Low_complexity Low_complexity 2 93 0 783 177 0 0 chr12 59532581 59532711 -84749778 - FLAM_A SINE Alu -3 130 1 1941 138 47 14 chr12 59532727 59533023 -84749466 - AluJb SINE Alu -6 306 1 2399 102 0 0 chr12 59533033 59533338 -84749151 - AluSg SINE Alu -5 305 1 1588 124 5 5 chr12 59534458 59534676 -84747813 - AluJo SINE Alu -81 231 14 250 324 114 0 chr12 59535534 59535639 -84746850 + MIR SINE MIR 31 147 -115 187 347 68 54 chr12 59536271 59536460 -84746029 + L2 LINE L2 2155 2351 -963 1642 174 0 8 chr12 59536460 59536719 -84745770 - AluJb SINE Alu -55 257 1 187 347 68 54 chr12 59536719 59536823 -84745666 + L2 LINE L2 2351 2452 -862 2254 106 3 0 chr12 59537325 59537618 -84744871 - AluSp SINE Alu -19 294 1 383 271 246 19 chr12 59537718 59537925 -84744564 + MIR SINE MIR 8 261 -1 665 283 122 0 chr12 59537928 59538158 -84744331 + MIR SINE MIR 4 261 -1 2370 88 7 0 chr12 59538170 59538464 -84744025 - AluSq SINE Alu -17 296 1 1536 105 19 0 chr12 59538789 59538998 -84743491 - AluY SINE Alu -16 295 83 1893 91 25 0 chr12 59538998 59539116 -84743373 - AluSc SINE Alu -61 248 134 2543 77 3 0 chr12 59539116 59539428 -84743061 - AluSp SINE Alu 0 313 1 1893 91 25 0 chr12 59539428 59539551 -84742938 - AluSc SINE Alu -175 134 1 1524 187 3 24 chr12 59539562 59539851 -84742638 - AluJo SINE Alu -22 290 8 311 172 0 17 chr12 59540201 59540259 -84742230 + L2 LINE L2 3213 3269 -3 244 259 74 0 chr12 59541911 59541992 -84740497 + Charlie7 DNA MER1_type 6 92 -2520 2430 78 0 3 chr12 59541993 59542288 -84740201 - AluSc SINE Alu -11 298 5 2555 69 0 3 chr12 59542411 59542716 -84739773 - AluY SINE Alu -7 304 1 2478 82 0 0 chr12 59542717 59543011 -84739478 - AluSq SINE Alu -19 294 1 2398 73 0 20 chr12 59544629 59544930 -84737559 - AluSg SINE Alu -15 295 1 661 208 8 0 chr12 59544934 59545064 -84737425 - FLAM_C SINE Alu -2 131 1 2084 141 0 20 chr12 59545148 59545447 -84737042 - AluJb SINE Alu -19 293 1 2096 98 0 44 chr12 59545458 59545775 -84736714 - AluSx SINE Alu 0 304 1 376 293 23 0 chr12 59545836 59545969 -84736520 - L1ME LINE L1 -304 5817 5682 2325 106 0 13 chr12 59547487 59547790 -84734699 - AluSx SINE Alu -13 299 1 2220 112 3 0 chr12 59547790 59548085 -84734404 - AluSx SINE Alu -16 296 1 2564 63 3 0 chr12 59548657 59548957 -84733532 - AluSp SINE Alu -12 301 1 443 268 111 35 chr12 59549048 59549246 -84733243 - MIR SINE MIR -44 218 6 297 254 15 22 chr12 59551434 59551568 -84730921 + G-rich Low_complexity Low_complexity 2 134 0 31 26 0 0 chr12 59551617 59551655 -84730834 + GC_rich Low_complexity Low_complexity 1 38 0 320 261 25 25 chr12 59551762 59551923 -84730566 + C-rich Low_complexity Low_complexity 5 165 0 516 60 0 0 chr12 59552677 59552744 -84729745 + tRNA-Ser-TCA tRNA tRNA 7 73 -12 2272 103 7 0 chr12 59552758 59553050 -84729439 - AluSx SINE Alu 0 312 19 272 257 0 0 chr12 59553544 59553614 -84728875 - MIR SINE MIR -1 261 192 1913 125 29 48 chr12 59553729 59554041 -84728448 - AluJo SINE Alu -6 306 1 2235 120 0 7 chr12 59554377 59554685 -84727804 + AluSg SINE Alu 5 310 0 2124 128 20 0 chr12 59556144 59556448 -84726041 - AluSx SINE Alu 0 312 3 2379 90 0 0 chr12 59556475 59556765 -84725724 - AluSc SINE Alu -14 295 6 2602 47 0 3 chr12 59556776 59557075 -84725414 - AluY SINE Alu -13 298 1 1850 175 0 3 chr12 59557121 59557406 -84725083 - AluJb SINE Alu -27 285 2 2565 75 3 0 chr12 59557476 59557782 -84724707 - AluSp SINE Alu -5 308 2 302 216 206 20 chr12 59557846 59557948 -84724541 + MARNA DNA Mariner 117 237 -349 194 355 68 44 chr12 59558110 59558146 -84724343 + L2 LINE L2 2223 2257 -1057 2317 110 0 7 chr12 59558146 59558455 -84724034 - AluSq SINE Alu -6 307 1 194 355 68 44 chr12 59558455 59558666 -84723823 + L2 LINE L2 2257 2476 -838 2199 93 14 0 chr12 59558679 59558987 -84723502 - AluSx SINE Alu 0 312 1 482 229 66 8 chr12 59558989 59559111 -84723378 - FLAM_A SINE Alu -4 129 1 1704 165 35 3 chr12 59559426 59559711 -84722778 - AluJb SINE Alu -14 298 5 216 328 0 0 chr12 59559735 59559799 -84722690 + MIR SINE MIR 193 256 -6 207 0 0 0 chr12 59560726 59560749 -84721740 + (A)n Simple_repeat Simple_repeat 1 23 0 2064 72 42 11 chr12 59561097 59561397 -84721092 - AluY SINE Alu -20 291 1 728 85 19 9 chr12 59562861 59562967 -84719522 - AluSg1 SINE Alu -202 107 1 1503 206 0 17 chr12 59563030 59563317 -84719172 + AluJo SINE Alu 1 282 -30 459 221 0 0 chr12 59563318 59563404 -84719085 - AluSg/x SINE Alu -22 290 205 2143 103 7 10 chr12 59563505 59563807 -84718682 + AluSx SINE Alu 1 301 -11 297 265 54 84 chr12 59564575 59564741 -84717748 - MIR SINE MIR 0 262 102 2118 94 14 3 chr12 59564770 59565056 -84717433 - AluSq SINE Alu -24 289 1 1850 135 0 60 chr12 59565085 59565404 -84717085 + AluJb SINE Alu 1 300 -12 351 273 91 15 chr12 59565407 59565539 -84716950 + L1MC4 LINE L1 7702 7843 -199 2060 131 3 3 chr12 59565556 59565868 -84716621 + AluJb SINE Alu 1 312 0 661 154 0 27 chr12 59565959 59566069 -84716420 + FRAM SINE Alu 24 130 -46 716 212 201 5 chr12 59566124 59566308 -84716181 - MER58A DNA MER1_type -4 220 1 1044 173 0 0 chr12 59566893 59567066 -84715423 - AluSc SINE Alu -4 305 133 2223 75 27 3 chr12 59567116 59567409 -84715080 - AluY SINE Alu -11 300 1 2469 56 0 0 chr12 59567420 59567722 -84714767 - AluY SINE Alu -9 302 1 185 303 23 76 chr12 59570999 59571131 -84711358 + L2 LINE L2 3180 3304 -9 348 319 17 0 chr12 59571568 59571687 -84710802 + L2 LINE L2 3190 3310 -3 2264 99 0 3 chr12 59572270 59572583 -84709906 - AluSp SINE Alu -1 312 1 2257 97 0 0 chr12 59572583 59572882 -84709607 - AluSq SINE Alu -14 299 1 1779 143 3 57 chr12 59573004 59573175 -84709314 - AluSx SINE Alu -10 302 154 2399 63 0 0 chr12 59573175 59573474 -84709015 - AluY SINE Alu -12 299 1 1779 143 3 57 chr12 59573474 59573617 -84708872 - AluSx SINE Alu -158 154 5 1594 168 0 57 chr12 59574475 59574620 -84707869 + AluJb SINE Alu 2 121 -191 2034 100 39 0 chr12 59574620 59574900 -84707589 + AluSg SINE Alu 1 291 -19 1594 168 0 57 chr12 59574900 59575069 -84707420 + AluJb SINE Alu 121 298 -14 2166 116 0 0 chr12 59575406 59575708 -84706781 + AluY SINE Alu 1 302 -9 781 96 29 0 chr12 59575718 59575822 -84706667 + AluSq/x SINE Alu 2 108 -204 186 191 0 0 chr12 59575826 59575868 -84706621 + (TA)n Simple_repeat Simple_repeat 2 43 0 232 224 264 23 chr12 59575883 59576057 -84706432 + L1MC4a LINE L1 5957 6172 -1636 2180 81 27 3 chr12 59576911 59577206 -84705283 - AluSc SINE Alu -7 302 1 271 338 102 70 chr12 59577867 59577954 -84704535 - L2 LINE L2 0 3272 3189 2254 84 3 0 chr12 59577954 59578250 -84704239 + AluSx SINE Alu 1 297 -15 2057 138 0 0 chr12 59578260 59578564 -84703925 + AluSx SINE Alu 1 304 -8 271 338 102 70 chr12 59578564 59579143 -84703346 - L2 LINE L2 -91 3181 2553 2365 89 0 0 chr12 59579152 59579455 -84703034 + AluSc SINE Alu 1 303 -6 2339 93 0 0 chr12 59579552 59579853 -84702636 + AluSx SINE Alu 1 301 -11 2366 80 0 0 chr12 59580571 59580882 -84701607 + AluY SINE Alu 1 311 0 2175 90 0 3 chr12 59580985 59581275 -84701214 + AluSx SINE Alu 9 297 -15 1833 159 13 3 chr12 59581321 59581622 -84700867 + MER1B DNA MER1_type 1 304 -35 2217 104 0 0 chr12 59581668 59581966 -84700523 - AluSx SINE Alu -14 298 1 1879 143 0 23 chr12 59581974 59582275 -84700214 - AluJb SINE Alu -14 298 5 202 323 43 32 chr12 59582293 59582386 -84700103 + MIR SINE MIR 91 184 -78 181 57 57 0 chr12 59582387 59582422 -84700067 + (TA)n Simple_repeat Simple_repeat 2 38 0 2075 110 3 0 chr12 59582423 59582714 -84699775 - AluSc SINE Alu -17 292 1 1706 179 0 3 chr12 59582760 59583045 -84699444 - AluJb SINE Alu -27 285 2 1213 124 15 20 chr12 59583473 59583675 -84698814 + AluSg/x SINE Alu 111 311 -1 2099 60 0 25 chr12 59585866 59586148 -84696341 + AluSg SINE Alu 1 275 -35 1486 140 99 7 chr12 59586192 59586464 -84696025 + AluJb SINE Alu 1 297 -15 903 106 21 0 chr12 59586720 59586861 -84695628 - BC200 scRNA scRNA -51 149 6 189 0 0 0 chr12 59588711 59588732 -84693757 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1746 133 4 8 chr12 59588743 59589007 -84693482 - AluJb SINE Alu -44 268 6 1377 85 0 0 chr12 59589468 59589644 -84692845 - AluSq SINE Alu -4 309 134 1844 92 19 4 chr12 59589644 59589905 -84692584 - AluSx SINE Alu -5 307 43 30 0 0 0 chr12 59590037 59590067 -84692422 + AT_rich Low_complexity Low_complexity 1 30 0 2065 120 0 3 chr12 59590229 59590528 -84691961 - AluSg SINE Alu -12 298 1 2357 90 3 0 chr12 59591297 59591609 -84690880 + AluSp SINE Alu 1 313 0 1565 181 0 27 chr12 59593563 59593861 -84688628 - AluJb SINE Alu -14 298 9 2415 87 0 0 chr12 59593991 59594303 -84688186 - AluSx SINE Alu 0 312 1 2262 105 0 6 chr12 59594817 59595132 -84687357 + AluSq SINE Alu 1 313 0 1226 123 16 0 chr12 59595132 59595319 -84687170 + AluSg/x SINE Alu 119 308 -2 288 227 227 17 chr12 59595598 59595717 -84686772 + L3 LINE CR1 1424 1567 -10 1909 125 3 46 chr12 59595998 59596156 -84686333 - AluSx SINE Alu -21 291 151 2282 83 3 3 chr12 59596156 59596456 -84686033 - AluSx SINE Alu -12 300 1 1909 125 3 46 chr12 59596456 59596601 -84685888 - AluSx SINE Alu -161 151 1 2125 90 4 0 chr12 59597604 59597906 -84684583 + AluSg SINE Alu 1 303 0 2235 86 0 7 chr12 59607544 59607846 -84674643 - AluSg SINE Alu -1 309 10 2250 108 0 0 chr12 59607874 59608170 -84674319 - AluSx SINE Alu -16 296 1 2011 100 4 4 chr12 59608480 59608816 -84673673 + AluSg SINE Alu 1 336 0 1962 148 0 7 chr12 59608913 59609217 -84673272 + AluJb SINE Alu 11 312 0 575 224 112 0 chr12 59611213 59611374 -84671115 - MIR SINE MIR 0 262 84 39 38 0 0 chr12 59611400 59611453 -84671036 + AT_rich Low_complexity Low_complexity 1 53 0 2011 136 0 13 chr12 59611462 59611598 -84670891 + AluSx SINE Alu 1 137 -175 2077 114 14 3 chr12 59611598 59611888 -84670601 + AluSx SINE Alu 1 293 -19 2011 136 0 13 chr12 59611888 59612052 -84670437 + AluSx SINE Alu 137 297 -15 35 0 0 0 chr12 59612052 59612087 -84670402 + AT_rich Low_complexity Low_complexity 1 35 0 617 152 95 19 chr12 59612087 59612192 -84670297 - FLAM_C SINE Alu -25 118 6 1048 171 0 50 chr12 59612209 59612390 -84670099 - FAM SINE Alu -3 172 1 249 100 0 0 chr12 59612392 59612442 -84670047 - L1MC3 LINE L1 -6 7779 7730 865 149 0 40 chr12 59612442 59612590 -84669899 + FLAM_C SINE Alu 1 142 -1 520 123 25 0 chr12 59612599 59612680 -84669809 - L1MC3 LINE L1 -44 7741 7659 2325 114 0 0 chr12 59612774 59613081 -84669408 - AluSx SINE Alu -5 307 1 2250 122 0 3 chr12 59613083 59613386 -84669103 - AluSx SINE Alu -10 302 1 251 305 12 49 chr12 59613386 59613468 -84669021 + L2 LINE L2 3194 3272 0 600 108 0 0 chr12 59613517 59613600 -84668889 + AluSg/x SINE Alu 219 301 -8 2482 68 7 0 chr12 59617033 59617329 -84665160 - AluY SINE Alu -13 298 1 252 229 0 14 chr12 59620142 59620212 -84662277 + (CGG)n Simple_repeat Simple_repeat 1 69 0 23 0 0 0 chr12 59621169 59621192 -84661297 + AT_rich Low_complexity Low_complexity 1 23 0 1999 94 11 4 chr12 59621194 59621470 -84661019 - AluSq SINE Alu -14 299 22 2188 122 0 28 chr12 59622413 59622734 -84659755 + AluSx SINE Alu 1 312 0 676 167 0 0 chr12 59624194 59624325 -84658164 - AluSg/x SINE Alu 0 311 181 1436 81 20 0 chr12 59624469 59624667 -84657822 + AluY SINE Alu 110 311 0 221 372 78 16 chr12 59624700 59624829 -84657660 + MER5A DNA MER1_type 49 185 -4 1480 147 52 32 chr12 59624864 59625115 -84657374 + AluJb SINE Alu 1 256 -56 1574 112 0 9 chr12 59626189 59626403 -84656086 + AluSg/x SINE Alu 83 294 -16 2263 112 3 0 chr12 59626687 59626983 -84655506 - AluSp SINE Alu -16 297 1 1970 157 0 7 chr12 59627443 59627742 -84654747 + AluJb SINE Alu 1 297 -15 317 133 17 0 chr12 59630084 59630144 -84652345 - AluS SINE Alu -7 293 233 1551 81 0 0 chr12 59630144 59630330 -84652159 - AluSq SINE Alu -127 186 1 272 246 80 121 chr12 59631314 59631392 -84651097 - MIR SINE MIR -1 261 181 1067 114 361 40 chr12 59631392 59631619 -84650870 - AluSg SINE Alu 0 300 1 272 246 80 121 chr12 59631619 59631764 -84650725 - MIR SINE MIR -81 181 47 1703 113 0 0 chr12 59631783 59632004 -84650485 - AluSg/x SINE Alu -7 305 85 1899 156 3 17 chr12 59632050 59632351 -84650138 - AluJo SINE Alu -14 298 2 2429 93 0 10 chr12 59632451 59632763 -84649726 + AluSg SINE Alu 1 309 -1 1018 180 6 6 chr12 59632797 59632964 -84649525 + FRAM SINE Alu 1 166 -10 366 154 0 0 chr12 59632984 59633049 -84649440 + Alu SINE Alu 237 301 -1 709 218 0 0 chr12 59633987 59634120 -84648369 - FLAM_C SINE Alu 0 143 11 2305 97 0 0 chr12 59634186 59634474 -84648015 - AluSg SINE Alu -22 288 1 710 211 30 0 chr12 59635414 59635547 -84646942 - AluJo SINE Alu -174 138 2 2415 89 0 0 chr12 59635558 59635860 -84646629 - AluY SINE Alu -9 302 1 2026 123 7 0 chr12 59636356 59636632 -84645857 + AluSq SINE Alu 1 278 -35 2324 93 3 3 chr12 59636793 59637082 -84645407 + AluSp SINE Alu 1 289 -24 220 250 108 102 chr12 59637101 59637277 -84645212 + MIR SINE MIR 86 262 0 2364 101 3 0 chr12 59638045 59638342 -84644147 - AluSc SINE Alu -11 298 1 1008 198 0 0 chr12 59639010 59639172 -84643317 + FAM SINE Alu 4 165 -10 1699 184 0 30 chr12 59639184 59639294 -84643195 + AluJb SINE Alu 1 113 -199 2243 100 10 26 chr12 59639294 59639604 -84642885 - AluSp SINE Alu -8 305 1 1699 184 0 30 chr12 59639604 59639798 -84642691 + AluJb SINE Alu 113 296 -16 2216 99 3 0 chr12 59643714 59643997 -84638492 + AluSx SINE Alu 6 289 -23 456 259 184 43 chr12 59644812 59645044 -84637445 + MIR SINE MIR 6 261 -1 2134 101 7 32 chr12 59645139 59645447 -84637042 - AluSx SINE Alu -12 300 1 1611 165 62 54 chr12 59646991 59647351 -84635138 - MLT2A2 LTR ERVL -12 542 177 2142 87 0 57 chr12 59647351 59647697 -84634792 - AluSx SINE Alu 0 329 1 1611 165 62 54 chr12 59647697 59647876 -84634613 - MLT2A2 LTR ERVL -377 177 1 2481 95 0 9 chr12 59648199 59648514 -84633975 + AluSx SINE Alu 1 312 0 2474 83 0 0 chr12 59648575 59648875 -84633614 + AluY SINE Alu 1 300 -11 939 126 0 15 chr12 59648936 59649071 -84633418 + FLAM_C SINE Alu 1 133 0 1985 152 13 13 chr12 59649287 59649596 -84632893 + AluJb SINE Alu 1 309 -3 2057 119 3 16 chr12 59649664 59649799 -84632690 + AluSc SINE Alu 1 136 -173 2214 73 0 24 chr12 59649799 59650110 -84632379 + AluY SINE Alu 3 306 0 2057 119 3 16 chr12 59650110 59650276 -84632213 + AluSc SINE Alu 136 299 -10 2254 93 7 0 chr12 59650277 59650566 -84631923 + AluSp SINE Alu 2 292 -21 1596 193 59 3 chr12 59650703 59650993 -84631496 - AluSx SINE Alu -4 308 3 2259 113 0 16 chr12 59651020 59651338 -84631151 - AluSq SINE Alu 0 313 1 2128 112 0 63 chr12 59651619 59651748 -84630741 + AluSg SINE Alu 1 137 -173 2524 67 0 6 chr12 59651748 59652060 -84630429 + AluY SINE Alu 1 310 -1 2128 112 0 63 chr12 59652060 59652261 -84630228 + AluSg SINE Alu 137 310 0 1394 136 26 153 chr12 59652261 59652397 -84630092 + AluSx SINE Alu 1 68 -234 2431 98 0 3 chr12 59652397 59652703 -84629786 + AluSg SINE Alu 1 305 -5 1394 136 26 153 chr12 59652703 59652912 -84629577 + AluSx SINE Alu 68 302 0 366 154 0 0 chr12 59652932 59652997 -84629492 + Alu SINE Alu 236 300 -1 709 218 0 0 chr12 59653935 59654068 -84628421 - FLAM_C SINE Alu 0 143 11 2305 97 0 0 chr12 59654134 59654422 -84628067 - AluSg SINE Alu -22 288 1 710 211 30 0 chr12 59655362 59655495 -84626994 - AluJo SINE Alu -174 138 2 2400 93 0 0 chr12 59655506 59655808 -84626681 - AluY SINE Alu -9 302 1 2271 117 7 0 chr12 59656304 59656611 -84625878 + AluSq SINE Alu 1 309 -4 1928 126 14 18 chr12 59656624 59656910 -84625579 + AluY SINE Alu 1 285 -26 390 165 153 0 chr12 59657081 59657166 -84625323 - L2 LINE L2 0 3313 3216 333 311 19 0 chr12 59657174 59657277 -84625212 - L2 LINE L2 -32 3240 3136 326 296 26 40 chr12 59657881 59658033 -84624456 + L2 LINE L2 3159 3308 -5 2110 105 11 4 chr12 59658274 59658550 -84623939 - AluSq SINE Alu -35 278 1 1564 205 0 17 chr12 59658586 59658888 -84623601 - AluJo SINE Alu -11 301 5 994 155 61 0 chr12 59659485 59659666 -84622823 + L1MB3 LINE L1 5989 6180 -3 237 204 20 0 chr12 59659735 59659784 -84622705 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2331 87 16 10 chr12 59660503 59660814 -84621675 + AluSq SINE Alu 1 313 0 2271 121 6 10 chr12 59660948 59661261 -84621228 - AluSq SINE Alu -1 312 1 228 265 31 51 chr12 59661379 59661477 -84621012 + MIR SINE MIR 117 212 -50 1772 133 61 0 chr12 59661650 59661913 -84620576 - AluSx SINE Alu -7 305 27 1559 164 11 50 chr12 59661981 59662261 -84620228 - AluJo SINE Alu -41 271 3 27 0 0 0 chr12 59662725 59662752 -84619737 + AT_rich Low_complexity Low_complexity 1 27 0 2443 63 3 25 chr12 59662726 59663044 -84619445 - AluY SINE Alu 0 311 1 789 159 0 8 chr12 59663065 59663191 -84619298 - FLAM_C SINE Alu -7 126 2 2066 110 3 7 chr12 59663195 59663496 -84618993 - AluSx SINE Alu -10 302 3 1984 113 3 3 chr12 59663505 59663812 -84618677 - AluSg SINE Alu 0 307 1 298 299 40 36 chr12 59663986 59664174 -84618315 + MIR SINE MIR 17 206 -56 499 314 42 17 chr12 59664239 59664488 -84618001 + MIR SINE MIR 5 256 -6 237 65 0 0 chr12 59664631 59664662 -84617827 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 182 283 50 50 chr12 59664914 59665013 -84617476 - L3 LINE CR1 -650 927 829 2088 50 38 91 chr12 59665352 59665413 -84617076 + LTR10C LTR ERV1 287 350 -241 2045 96 24 3 chr12 59665413 59665705 -84616784 + AluY SINE Alu 1 298 -13 2088 50 38 91 chr12 59665705 59665900 -84616589 + LTR10C LTR ERV1 350 554 -37 2172 58 0 68 chr12 59665900 59666211 -84616278 + AluY SINE Alu 1 290 -21 2088 50 38 91 chr12 59666211 59666223 -84616266 + LTR10C LTR ERV1 554 565 -26 185 0 40 0 chr12 59666223 59666248 -84616241 + (TTAAA)n Simple_repeat Simple_repeat 2 27 0 2088 50 38 91 chr12 59666248 59666297 -84616192 + LTR10C LTR ERV1 565 589 -2 844 122 8 0 chr12 59666297 59666428 -84616061 + AluSg/x SINE Alu 173 304 -6 298 128 0 0 chr12 59666636 59666675 -84615814 + Alu SINE Alu 1 39 -261 21 0 0 0 chr12 59666705 59666726 -84615763 + AT_rich Low_complexity Low_complexity 1 21 0 2154 99 10 19 chr12 59666733 59667047 -84615442 + AluSx SINE Alu 1 311 -1 423 171 0 0 chr12 59667491 59667561 -84614928 + AluJ/FLAM SINE Alu 2 71 -241 228 200 60 0 chr12 59667765 59667815 -84614674 + L2 LINE L2 3022 3074 -239 2680 19 3 0 chr12 59667935 59668245 -84614244 - AluYa5 SINE Alu 0 311 1 2253 84 3 0 chr12 59668255 59668553 -84613936 - AluSx SINE Alu -13 299 1 291 262 0 0 chr12 59668579 59668640 -84613849 + L2 LINE L2 3212 3272 0 222 250 108 102 chr12 59668862 59669038 -84613451 - MIR SINE MIR 0 262 86 1846 123 18 0 chr12 59669057 59669341 -84613148 - AluSp SINE Alu -24 289 1 2113 93 7 0 chr12 59669580 59669869 -84612620 - AluSp SINE Alu -21 292 2 869 177 12 0 chr12 59669870 59670034 -84612455 - FRAM SINE Alu -10 166 1 216 0 0 0 chr12 59670035 59670059 -84612430 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2144 73 0 21 chr12 59670059 59670347 -84612142 - AluY SINE Alu -29 282 1 1944 104 0 4 chr12 59670347 59670615 -84611874 - AluSq SINE Alu -17 296 30 1273 154 0 5 chr12 59670615 59670829 -84611660 - AluJb SINE Alu -15 297 85 1856 113 42 0 chr12 59672991 59673274 -84609215 - AluSg1 SINE Alu -14 295 1 24 0 0 0 chr12 59673395 59673419 -84609070 + AT_rich Low_complexity Low_complexity 1 24 0 1914 148 0 0 chr12 59674340 59674637 -84607852 + AluJb SINE Alu 5 301 -11 1663 172 51 6 chr12 59675151 59675483 -84607006 - L1PB4 LINE L1 -3 6153 5807 2235 70 0 20 chr12 59676797 59677097 -84605392 + AluSq SINE Alu 1 294 -19 207 0 0 0 chr12 59677187 59677210 -84605279 + (T)n Simple_repeat Simple_repeat 1 23 0 2137 91 0 7 chr12 59677224 59677522 -84604967 + AluSg SINE Alu 1 296 -14 318 152 0 5 chr12 59677522 59677588 -84604901 - FAM SINE Alu -6 169 125 236 265 0 71 chr12 59678605 59678703 -84603786 + CT-rich Low_complexity Low_complexity 2 92 0 310 337 94 6 chr12 59681150 59681331 -84601158 + L2 LINE L2 2457 2653 -661 635 180 0 41 chr12 59684653 59684775 -84597714 - MER2 DNA MER2_type -219 126 10 1682 125 29 18 chr12 59684975 59685255 -84597234 - AluSq SINE Alu 0 313 31 2294 81 7 0 chr12 59685727 59686024 -84596465 - AluSq SINE Alu -14 299 1 2514 52 0 0 chr12 59686134 59686441 -84596048 - AluY SINE Alu -4 307 1 1608 109 0 0 chr12 59688166 59688395 -84594094 + AluSg SINE Alu 1 229 -81 877 64 6 144 chr12 59688395 59688568 -84593921 + AluSc SINE Alu 157 305 -4 925 216 5 0 chr12 59688613 59688798 -84593691 + MLT1B LTR MaLR 205 390 0 1893 133 8 61 chr12 59688944 59688962 -84593527 - L1MB2 LINE L1 -13 6158 6141 1516 153 82 11 chr12 59688962 59689244 -84593245 + AluJb SINE Alu 1 302 -10 1893 133 8 61 chr12 59689244 59689277 -84593212 - L1MB2 LINE L1 -30 6141 6108 2074 120 13 3 chr12 59689277 59689586 -84592903 - AluSx SINE Alu 0 312 1 1893 133 8 61 chr12 59689586 59689894 -84592595 - L1MB2 LINE L1 -63 6108 5817 618 227 0 8 chr12 59689896 59690024 -84592465 - FLAM_A SINE Alu -12 130 4 7627 188 35 81 chr12 59690083 59690129 -84592360 - L1MB2 LINE L1 -357 5826 5779 2073 118 3 7 chr12 59690129 59690435 -84592054 - AluSx SINE Alu -3 309 5 7627 188 35 81 chr12 59690435 59690637 -84591852 - L1MB2 LINE L1 -404 5779 5569 1985 121 3 13 chr12 59690637 59690943 -84591546 + AluSq SINE Alu 1 303 -10 7627 188 35 81 chr12 59690943 59691484 -84591005 - L1MB2 LINE L1 -614 5569 5005 2233 69 0 14 chr12 59691484 59691801 -84590688 - AluY SINE Alu 0 313 1 7627 188 35 81 chr12 59691801 59692596 -84589893 - L1MB2 LINE L1 -1178 5005 4175 1276 99 0 16 chr12 59692596 59692788 -84589701 + AluSc SINE Alu 111 299 -10 7627 188 35 81 chr12 59692788 59693796 -84588693 - L1MB2 LINE L1 -2008 4175 3179 791 186 84 18 chr12 59693799 59693986 -84588503 - AluSg/x SINE Alu 0 312 134 2105 113 14 0 chr12 59693986 59694297 -84588192 - AluSx SINE Alu 0 312 3 2195 87 7 13 chr12 59694301 59694610 -84587879 - AluY SINE Alu -4 307 1 255 203 0 0 chr12 59694656 59694725 -84587764 - L1MB2 LINE L1 -2989 3157 3089 608 188 153 15 chr12 59694795 59694997 -84587492 - L1MC5 LINE L1 -36 7925 7696 1198 39 39 0 chr12 59695009 59695165 -84587324 - L1PA4 LINE L1 0 6155 5994 1179 229 18 47 chr12 59695201 59695542 -84586947 - L1M4 LINE L1 -1751 4395 4065 692 199 0 0 chr12 59695581 59695712 -84586777 - FLAM_C SINE Alu 0 143 13 2297 82 0 13 chr12 59695741 59695910 -84586579 - AluY SINE Alu -11 300 135 2240 103 0 0 chr12 59695910 59696210 -84586279 - AluSg SINE Alu -10 300 1 2297 82 0 13 chr12 59696210 59696344 -84586145 - AluY SINE Alu -176 135 1 264 215 108 31 chr12 59696355 59696485 -84586004 - L1M4 LINE L1 -1787 4359 4220 1162 137 151 92 chr12 59696495 59696830 -84585659 - AluJo SINE Alu 0 352 1 1382 165 0 12 chr12 59696854 59697102 -84585387 - AluJb SINE Alu -4 308 64 2150 99 3 7 chr12 59697143 59697446 -84585043 - AluSg SINE Alu -8 302 1 296 83 0 0 chr12 59697458 59697494 -84584995 - tRNA-Lys-AAG tRNA tRNA -38 38 3 594 280 17 0 chr12 59697498 59697673 -84584816 - L1M4 LINE L1 -1926 4220 4043 1280 169 57 12 chr12 59697714 59697962 -84584527 + AluJo SINE Alu 1 259 -53 224 250 18 0 chr12 59697962 59698018 -84584471 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 1548 172 0 36 chr12 59698484 59698792 -84583697 + AluJo SINE Alu 3 299 -13 1939 118 0 10 chr12 59698861 59699149 -84583340 - AluSx SINE Alu -27 285 1 1372 170 80 38 chr12 59699150 59699612 -84582877 - L1MDa LINE L1 -3934 2606 2191 259 176 59 0 chr12 59699713 59699764 -84582725 - MER4D LTR ERV1 -14 889 836 2139 128 0 0 chr12 59699798 59700110 -84582379 + AluSx SINE Alu 1 312 0 410 244 24 17 chr12 59700185 59700335 -84582154 - LTR39 LTR ERV1 -389 394 35 443 207 14 114 chr12 59700454 59700557 -84581932 + L2 LINE L2 3187 3274 -39 2053 107 7 7 chr12 59700557 59700855 -84581634 - AluSx SINE Alu -14 298 1 443 207 14 114 chr12 59700855 59700891 -84581598 + L2 LINE L2 3274 3312 -1 493 107 0 95 chr12 59701048 59701132 -84581357 - AluJ/FRAM SINE Alu -18 294 219 2829 130 111 10 chr12 59701154 59701670 -84580819 + MER51D LTR ERV1 1 568 -89 1965 107 3 14 chr12 59701671 59701960 -84580529 - AluSx SINE Alu -15 297 12 676 129 40 0 chr12 59702098 59702199 -84580290 - AluSq/x SINE Alu -207 106 2 833 209 19 33 chr12 59702646 59702861 -84579628 - AluSc SINE Alu -1 308 97 241 265 0 20 chr12 59702916 59703018 -84579471 + CT-rich Low_complexity Low_complexity 61 160 0 359 375 26 0 chr12 59703020 59703172 -84579317 + C-rich Low_complexity Low_complexity 6 161 0 190 228 10 50 chr12 59703172 59703273 -84579216 + CT-rich Low_complexity Low_complexity 1 97 0 280 337 0 11 chr12 59703284 59703373 -84579116 + C-rich Low_complexity Low_complexity 4 91 0 369 164 94 47 chr12 59703559 59703631 -84578858 - MER52-int LTR ERV1 -4107 3311 3244 1998 129 3 0 chr12 59703631 59703926 -84578563 - AluSx SINE Alu -16 296 1 369 164 94 47 chr12 59703926 59703974 -84578515 - MER52-int LTR ERV1 -4174 3244 1996 646 191 99 0 chr12 59703995 59704126 -84578363 - MER52-int LTR ERV1 -4818 1128 985 433 129 71 0 chr12 59704139 59704209 -84578280 - MER52-int LTR ERV1 -5544 1547 1473 304 266 0 0 chr12 59704206 59704285 -84578204 - MER52-int LTR ERV1 -5818 1273 1195 * 1988 86 0 4 chr12 59704642 59704911 -84577578 - AluY SINE Alu -43 268 1 1942 128 3 7 chr12 59704970 59705258 -84577231 - AluSx SINE Alu -25 287 1 2379 58 3 29 chr12 59705778 59706090 -84576399 + AluY SINE Alu 1 304 -7 2074 138 0 0 chr12 59706824 59707136 -84575353 + AluSx SINE Alu 1 312 0 2010 110 10 0 chr12 59708214 59708504 -84573985 - AluSg SINE Alu -17 293 1 1991 150 47 70 chr12 59709719 59709799 -84572690 + MSTC LTR MaLR 1 81 -347 2033 103 3 20 chr12 59709799 59710101 -84572388 + AluSx SINE Alu 16 312 0 1991 150 47 70 chr12 59710101 59710129 -84572360 + MSTC LTR MaLR 81 108 -320 2274 89 0 3 chr12 59710129 59710433 -84572056 + AluSc SINE Alu 1 303 -6 1991 150 47 70 chr12 59710433 59710749 -84571740 + MSTC LTR MaLR 108 416 -12 2281 81 3 0 chr12 59710779 59711075 -84571414 + AluSp SINE Alu 1 297 -16 1814 147 7 3 chr12 59711451 59711744 -84570745 + AluSq SINE Alu 1 294 -19 2208 146 68 27 chr12 59712046 59712158 -84570331 - MSTB1 LTR MaLR 0 432 326 1900 149 3 3 chr12 59712158 59712453 -84570036 + AluSq SINE Alu 1 295 -18 2208 146 68 27 chr12 59712453 59712751 -84569738 - MSTB1 LTR MaLR -106 326 5 1213 202 0 0 chr12 59713004 59713028 -84569461 - AluJo SINE Alu -3 309 286 855 128 104 0 chr12 59713028 59713192 -84569297 - L1MC2 LINE L1 -9 6335 6155 1213 202 0 0 chr12 59713192 59713390 -84569099 - AluJo SINE Alu -25 287 87 2243 102 3 16 chr12 59713514 59713817 -84568672 + AluSx SINE Alu 1 299 -13 1705 120 62 78 chr12 59713827 59713963 -84568526 + AluSx SINE Alu 1 138 -174 2387 104 19 0 chr12 59713963 59714270 -84568219 + AluSq SINE Alu 1 313 0 1705 120 62 78 chr12 59714270 59714442 -84568047 + AluSx SINE Alu 138 304 -8 1672 199 51 0 chr12 59714554 59714850 -84567639 + AluJb SINE Alu 1 311 -1 684 154 28 28 chr12 59715120 59715263 -84567226 + L1MB5 LINE L1 6019 6161 -13 407 241 84 52 chr12 59715271 59715339 -84567150 + L1MEc LINE L1 1638 1702 -4694 2006 153 0 0 chr12 59715339 59715640 -84566849 - AluJb SINE Alu -11 301 1 407 241 84 52 chr12 59715640 59715762 -84566727 + L1MEc LINE L1 1702 1834 -4562 2257 89 10 10 chr12 59715780 59716071 -84566418 - AluSx SINE Alu -21 291 1 2002 196 114 34 chr12 59716072 59716181 -84566308 + L1MEc LINE L1 1703 1802 -4594 315 0 0 0 chr12 59716191 59716226 -84566263 + (TG)n Simple_repeat Simple_repeat 2 36 0 2272 93 10 17 chr12 59716226 59716516 -84565973 - AluSx SINE Alu -22 290 1 2002 196 114 34 chr12 59716516 59716751 -84565738 + L1MEc LINE L1 1802 2017 -4379 1601 188 7 28 chr12 59716751 59716888 -84565601 + AluJo SINE Alu 6 144 -168 1757 186 28 0 chr12 59716888 59717178 -84565311 + AluJb SINE Alu 1 298 -14 1601 188 7 28 chr12 59717178 59717328 -84565161 + AluJo SINE Alu 144 287 -25 216 0 0 0 chr12 59717332 59717356 -84565133 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2002 196 114 34 chr12 59717356 59717402 -84565087 + L1MEc LINE L1 2019 2060 -4336 2475 98 0 0 chr12 59717402 59717708 -84564781 + AluY SINE Alu 1 306 -5 2002 196 114 34 chr12 59717708 59718023 -84564466 + L1MEc LINE L1 2060 2472 -3924 751 167 25 0 chr12 59718024 59718144 -84564345 + FLAM_C SINE Alu 2 124 -19 2451 95 0 0 chr12 59718175 59718479 -84564010 + AluSg SINE Alu 1 304 -6 460 265 7 0 chr12 59718479 59718615 -84563874 + L1MEc LINE L1 2422 2558 -3657 2168 138 7 3 chr12 59718615 59718920 -84563569 + AluSx SINE Alu 1 306 -6 856 231 42 11 chr12 59718923 59719187 -84563302 + L1MEc LINE L1 2809 3080 -3135 * 3011 186 109 20 chr12 59719176 59719418 -84563071 + L1MDa LINE L1 1595 1814 -4726 276 30 0 0 chr12 59719418 59719451 -84563038 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 3011 186 109 20 chr12 59719451 59719607 -84562882 + L1MDa LINE L1 1814 1955 -4585 1931 129 0 11 chr12 59719607 59719885 -84562604 + AluSx SINE Alu 38 312 0 3011 186 109 20 chr12 59719885 59720478 -84562011 + L1MDa LINE L1 1955 2678 -3862 1801 151 0 7 chr12 59720479 59720751 -84561738 + AluSx SINE Alu 1 270 -42 1997 125 10 13 chr12 59720819 59721122 -84561367 + AluSx SINE Alu 1 302 -10 5702 132 157 23 chr12 59721186 59722295 -84560194 - MER52C LTR ERV1 -21 1257 1 1218 138 32 0 chr12 59722301 59722489 -84560000 - MER52C-int LTR ERV1 -6 7085 6892 330 80 40 0 chr12 59722487 59722537 -84559952 - MER52C-int LTR ERV1 -1177 6028 5977 * 1562 184 138 47 chr12 59722543 59723037 -84559452 - MER57-int LTR ERV1 -2215 3002 2464 25421 61 36 26 chr12 59723053 59723502 -84558987 + HERVL-A1 LTR ERVL 303 746 -4908 190 235 0 129 chr12 59723502 59723587 -84558902 + MER5A DNA MER1_type 16 89 -100 25421 61 36 26 chr12 59723587 59724891 -84557598 + HERVL-A1 LTR ERVL 746 2036 -3618 8455 52 4 0 chr12 59724891 59725852 -84556637 - LTR5 LTR ERVK -4 965 1 25421 61 36 26 chr12 59725852 59729275 -84553214 + HERVL-A1 LTR ERVL 2036 5654 0 2751 89 20 8 chr12 59729275 59729669 -84552820 + MLT2A1 LTR ERVL 1 399 -45 183 156 0 0 chr12 59729672 59729704 -84552785 + (TA)n Simple_repeat Simple_repeat 2 33 0 996 89 13 6 chr12 59729705 59729863 -84552626 - HERVL LTR ERVL -27 5627 5469 2377 161 37 20 chr12 59729880 59730368 -84552121 - MER57-int LTR ERV1 -6679 1137 592 1318 160 53 23 chr12 59730346 59730609 -84551880 - MER57-int LTR ERV1 -3926 3611 3341 * 1066 222 9 22 chr12 59730761 59730991 -84551498 - AluJo SINE Alu -84 228 2 453 77 15 0 chr12 59730991 59731056 -84551433 + L1MB7 LINE L1 6111 6176 -8 2408 102 0 0 chr12 59731428 59731731 -84550758 - AluSg SINE Alu -7 303 1 423 245 82 27 chr12 59731843 59731989 -84550500 + MIR SINE MIR 54 207 -55 1004 229 81 35 chr12 59731989 59732121 -84550368 + MER5C DNA MER1_type 1 126 -198 1985 124 10 10 chr12 59732121 59732412 -84550077 - AluSx SINE Alu -21 291 1 1004 229 81 35 chr12 59732412 59732589 -84549900 + MER5C DNA MER1_type 126 324 0 2011 165 0 16 chr12 59732634 59732949 -84549540 + AluJb SINE Alu 1 310 -2 2365 92 3 7 chr12 59733096 59733400 -84549089 + AluSg SINE Alu 1 303 -7 224 343 70 14 chr12 59733508 59733651 -84548838 - L2 LINE L2 -244 3069 2919 245 331 30 85 chr12 59733871 59734028 -84548461 + L2 LINE L2 1072 1236 -2078 5029 168 30 56 chr12 59734028 59735128 -84547361 + MER11C LTR ERVK 1 1071 0 245 331 30 85 chr12 59735128 59735188 -84547301 + L2 LINE L2 1236 1298 -2016 2374 94 3 0 chr12 59735188 59735487 -84547002 - AluSg SINE Alu -10 300 1 245 331 30 85 chr12 59735487 59735670 -84546819 + L2 LINE L2 1298 1451 -1863 700 180 67 27 chr12 59735850 59736000 -84546489 - AluJb SINE Alu -18 294 139 445 333 116 56 chr12 59736047 59736435 -84546054 + L2 LINE L2 2067 2430 -884 2536 78 13 0 chr12 59736435 59736744 -84545745 + AluSp SINE Alu 1 313 0 2409 75 31 0 chr12 59736748 59737040 -84545449 + AluSp SINE Alu 1 301 -12 445 333 116 56 chr12 59737040 59737201 -84545288 + L2 LINE L2 2432 2582 -732 1829 162 7 0 chr12 59737201 59737479 -84545010 - AluJb SINE Alu -16 296 17 445 333 116 56 chr12 59737479 59737568 -84544921 + L2 LINE L2 2582 2750 -564 1916 95 84 4 chr12 59737840 59738138 -84544351 + AluSx SINE Alu 1 319 0 2079 94 79 4 chr12 59738448 59738725 -84543764 + AluSq SINE Alu 1 298 -15 1369 113 5 0 chr12 59738904 59739089 -84543400 - AluSg/x SINE Alu -6 304 119 291 229 43 29 chr12 59739154 59739224 -84543265 + MER5A DNA MER1_type 93 163 -26 423 296 40 8 chr12 59739481 59739606 -84542883 + L2 LINE L2 3134 3262 -10 250 337 84 24 chr12 59739661 59739827 -84542662 - L2 LINE L2 -182 3090 2915 2272 74 0 0 chr12 59740022 59740341 -84542148 + AluSx SINE Alu 1 319 0 2462 68 0 13 chr12 59740343 59740652 -84541837 + AluSg SINE Alu 1 305 -5 1067 132 13 0 chr12 59741803 59741955 -84540534 + FAM SINE Alu 21 174 -11 2884 92 35 39 chr12 59743594 59743646 -84538843 - L1MB2 LINE L1 -1 6170 6119 1992 95 0 82 chr12 59743646 59743961 -84538528 + AluSg SINE Alu 1 289 -21 2884 92 35 39 chr12 59743961 59744395 -84538094 - L1MB2 LINE L1 -52 6119 5686 456 258 169 25 chr12 59744448 59744646 -84537843 - MIR SINE MIR -4 258 24 430 314 0 9 chr12 59745862 59745967 -84536522 - MIR SINE MIR -75 133 30 226 199 12 193 chr12 59748230 59748255 -84534234 + L1ME LINE L1 5498 5526 -640 2450 86 0 3 chr12 59748255 59748556 -84533933 + AluSq SINE Alu 1 300 -13 226 199 12 193 chr12 59748556 59748597 -84533892 + L1ME LINE L1 5526 5573 -593 1962 168 0 0 chr12 59748597 59748894 -84533595 - AluJb SINE Alu -11 301 5 226 199 12 193 chr12 59748894 59748959 -84533530 + L1ME LINE L1 5573 5595 -571 1958 134 60 0 chr12 59748959 59749242 -84533247 - AluSx SINE Alu -12 300 1 226 199 12 193 chr12 59749242 59749279 -84533210 + L1ME LINE L1 5595 5637 -529 248 224 153 20 chr12 59749517 59749615 -84532874 - L2 LINE L2 -801 2513 2403 2337 107 0 0 chr12 59750020 59750328 -84532161 + AluSx SINE Alu 3 310 -2 2081 127 0 17 chr12 59750474 59750610 -84531879 + AluSx SINE Alu 1 138 -174 2368 93 3 0 chr12 59750610 59750900 -84531589 + AluSx SINE Alu 1 291 -21 2081 127 0 17 chr12 59750900 59751054 -84531435 + AluSx SINE Alu 138 286 -26 1599 173 27 17 chr12 59751177 59751472 -84531017 + AluJo SINE Alu 1 298 -14 350 280 140 62 chr12 59751647 59751707 -84530782 - MIR SINE MIR 0 262 208 2377 78 0 0 chr12 59751707 59752001 -84530488 - AluSc SINE Alu -15 294 1 350 280 140 62 chr12 59752001 59752183 -84530306 - MIR SINE MIR -54 208 1 22 0 0 0 chr12 59752291 59752313 -84530176 + GC_rich Low_complexity Low_complexity 1 22 0 2206 122 0 0 chr12 59754167 59754462 -84528027 - AluSx SINE Alu -17 295 1 2322 98 0 7 chr12 59756720 59757026 -84525463 - AluY SINE Alu -7 304 1 447 254 91 67 chr12 59757605 59757886 -84524603 - L2 LINE L2 0 3313 2982 2058 99 15 0 chr12 59757918 59758190 -84524299 - AluSq SINE Alu -1 312 37 954 126 19 57 chr12 59759993 59760152 -84522337 - AluJb SINE Alu -12 300 148 730 155 9 9 chr12 59760310 59760426 -84522063 + AluJo/FLAM SINE Alu 1 116 -186 2556 63 0 3 chr12 59760428 59760731 -84521758 - AluY SINE Alu -9 302 1 2281 96 31 0 chr12 59762553 59762844 -84519645 + AluSx SINE Alu 6 305 -7 437 258 31 31 chr12 59763078 59763206 -84519283 + MIR SINE MIR 24 151 -57 277 146 0 0 chr12 59763622 59763663 -84518826 - Alu SINE Alu -259 43 3 2248 107 0 0 chr12 59763693 59763982 -84518507 + AluSg SINE Alu 1 289 -21 1367 198 34 44 chr12 59764293 59764591 -84517898 - AluJb SINE Alu -17 295 1 307 236 65 96 chr12 59764600 59764799 -84517690 - L1PA16 LINE L1 -5 6161 5969 3330 86 2 4 chr12 59764622 59765074 -84517415 - L1PB2 LINE L1 -7 6144 5694 2308 175 19 46 chr12 59765087 59765629 -84516860 - L1MB8 LINE L1 0 6178 5652 1029 186 6 0 chr12 59765631 59765798 -84516691 - FRAM SINE Alu -8 168 1 1364 73 0 0 chr12 59765810 59765974 -84516515 - AluY SINE Alu -6 305 142 267 141 62 45 chr12 59765988 59766165 -84516324 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 24 32 0 0 chr12 59766168 59766199 -84516290 + AT_rich Low_complexity Low_complexity 1 31 0 900 137 8 0 chr12 59766199 59766330 -84516159 - AluY SINE Alu -179 132 1 1901 163 0 13 chr12 59766372 59766678 -84515811 + AluSx SINE Alu 1 302 -10 2146 112 7 13 chr12 59766716 59767020 -84515469 + AluSx SINE Alu 1 302 -10 5711 131 157 23 chr12 59767084 59768193 -84514296 - MER52C LTR ERV1 -21 1257 1 1218 138 32 0 chr12 59768199 59768387 -84514102 - MER52C-int LTR ERV1 -6 7085 6892 330 80 40 0 chr12 59768385 59768435 -84514054 - MER52C-int LTR ERV1 -1177 6028 5977 * 1562 184 138 47 chr12 59768441 59768935 -84513554 - MER51-int LTR ERV1 -2215 3002 2464 25460 62 35 26 chr12 59768951 59769400 -84513089 + HERVL-A1 LTR ERVL 303 746 -4908 190 235 0 129 chr12 59769400 59769485 -84513004 + MER5A DNA MER1_type 16 89 -100 25460 62 35 26 chr12 59769485 59770789 -84511700 + HERVL-A1 LTR ERVL 746 2037 -3617 8330 52 6 1 chr12 59770789 59771749 -84510740 - LTR5 LTR ERVK -4 965 1 25460 62 35 26 chr12 59771749 59775175 -84507314 + HERVL-A1 LTR ERVL 2037 5654 0 2751 89 20 8 chr12 59775175 59775569 -84506920 + MLT2A1 LTR ERVL 1 399 -45 183 156 0 0 chr12 59775572 59775604 -84506885 + (TA)n Simple_repeat Simple_repeat 2 33 0 996 89 13 6 chr12 59775605 59775763 -84506726 - HERVL LTR ERVL -27 5627 5469 2126 174 51 0 chr12 59775780 59776189 -84506300 - MER51-int LTR ERV1 -6679 1137 708 2081 108 45 0 chr12 59776393 59776681 -84505808 - AluSx SINE Alu -11 301 1 420 214 0 0 chr12 59776713 59776783 -84505706 - AluJ/F(R)AM SINE Alu -109 203 134 1808 133 16 41 chr12 59776783 59777099 -84505390 - AluSx SINE Alu -4 308 1 2148 88 46 7 chr12 59778111 59778395 -84504094 - AluSx SINE Alu -17 295 1 180 0 0 0 chr12 59778396 59778416 -84504073 + (TA)n Simple_repeat Simple_repeat 2 21 0 2283 122 3 0 chr12 59778591 59778902 -84503587 - AluSx SINE Alu 0 312 1 1501 156 0 78 chr12 59779060 59779355 -84503134 - AluJb SINE Alu -21 291 20 1650 196 0 7 chr12 59779756 59780042 -84502447 + AluJb SINE Alu 29 312 0 2489 85 0 0 chr12 59780364 59780659 -84501830 + AluSx SINE Alu 1 295 -17 292 170 0 149 chr12 59781370 59781464 -84501025 - MER116 DNA Mariner 0 80 1 264 361 9 9 chr12 59781542 59781650 -84500839 - MIR SINE MIR -59 149 42 2351 107 0 0 chr12 59781663 59781963 -84500526 - AluSg SINE Alu -10 300 1 22 0 0 0 chr12 59782224 59782246 -84500243 + AT_rich Low_complexity Low_complexity 1 22 0 2332 101 0 16 chr12 59782534 59782842 -84499647 + AluSx SINE Alu 1 303 -9 2286 106 7 0 chr12 59784323 59784625 -84497864 + AluSp SINE Alu 1 304 -9 1298 209 54 16 chr12 59784637 59784895 -84497594 + AluJo SINE Alu 1 268 -44 993 170 0 48 chr12 59785244 59785409 -84497080 - AluJo SINE Alu -30 282 126 1192 111 56 61 chr12 59785409 59785607 -84496882 + AluSx SINE Alu 1 197 -115 273 139 0 0 chr12 59785607 59785650 -84496839 + AluY SINE Alu 63 105 -196 1153 217 14 14 chr12 59785990 59786280 -84496209 - AluSg SINE Alu -9 291 2 1215 226 87 7 chr12 59786402 59786690 -84495799 + AluJo SINE Alu 1 311 -1 1969 111 0 4 chr12 59786739 59787000 -84495489 - AluSx SINE Alu -12 300 41 1697 121 64 0 chr12 59787404 59787653 -84494836 - AluSx SINE Alu -16 296 32 320 317 190 32 chr12 59787730 59788329 -84494160 - L2 LINE L2 -339 2975 2282 226 192 77 0 chr12 59788408 59788460 -84494029 + MIR SINE MIR 185 240 -22 685 217 16 0 chr12 59789022 59789151 -84493338 - FLAM_A SINE Alu -2 131 1 830 178 22 32 chr12 59789187 59789206 -84493283 - AluJo/FRAM SINE Alu 0 312 294 2243 123 7 0 chr12 59789206 59789514 -84492975 - AluSx SINE Alu -2 310 1 830 178 22 32 chr12 59789514 59789679 -84492810 - AluJo/FRAM SINE Alu -18 294 130 268 151 14 27 chr12 59789689 59789762 -84492727 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 1729 178 13 20 chr12 59789792 59790090 -84492399 - AluJo SINE Alu -16 296 1 707 144 0 9 chr12 59790849 59790960 -84491529 - AluJb SINE Alu -2 310 201 524 158 37 0 chr12 59790994 59791076 -84491413 - AluJb SINE Alu -23 289 205 2372 82 3 0 chr12 59791122 59791426 -84491063 - AluY SINE Alu -4 307 3 1724 143 71 58 chr12 59791479 59791787 -84490702 + AluJb SINE Alu 1 312 0 1680 187 3 29 chr12 59791787 59792097 -84490392 + AluJo SINE Alu 1 302 -10 22 0 0 0 chr12 59792469 59792491 -84489998 + AT_rich Low_complexity Low_complexity 1 22 0 2172 128 0 14 chr12 59792491 59792788 -84489701 - AluSx SINE Alu -19 293 1 1657 181 0 0 chr12 59792798 59793069 -84489420 - AluJb SINE Alu -22 290 20 238 242 0 15 chr12 59793082 59793148 -84489341 - MIR SINE MIR -15 247 183 1897 114 99 0 chr12 59793186 59793459 -84489030 + AluSx SINE Alu 1 300 -12 363 246 167 18 chr12 59793482 59793596 -84488893 - L2 LINE L2 -4 3309 3179 280 326 18 22 chr12 59793849 59794009 -84488480 + G-rich Low_complexity Low_complexity 1 223 0 302 148 0 5 chr12 59795118 59795184 -84487305 + FAM SINE Alu 125 169 -6 2453 74 0 7 chr12 59795184 59795481 -84487008 - AluSg SINE Alu -14 296 2 709 163 54 41 chr12 59795539 59795686 -84486803 - MER52C-int LTR ERV1 -4808 1138 990 443 113 56 0 chr12 59795695 59795766 -84486723 - MER52C-int LTR ERV1 -5544 1547 1473 * 1867 132 48 15 chr12 59795750 59796083 -84486406 - MER52C-int LTR ERV1 -5934 1157 814 6824 156 14 10 chr12 59796093 59797056 -84485433 - MER52C-int LTR ERV1 -3868 3223 2174 2799 26 0 0 chr12 59797056 59797360 -84485129 - AluY SINE Alu -7 304 1 6824 156 14 10 chr12 59797360 59797776 -84484713 - MER52C-int LTR ERV1 -4917 2174 1761 476 107 83 0 chr12 59797918 59798002 -84484487 - MER52C-int LTR ERV1 -6520 571 481 3129 116 29 21 chr12 59798054 59798535 -84483954 - MER52C-int LTR ERV1 -6605 486 2 2801 165 110 27 chr12 59798535 59798694 -84483795 - MER52C LTR ERV1 0 1278 1134 2127 103 27 0 chr12 59798694 59798986 -84483503 + AluSx SINE Alu 1 300 -12 2801 165 110 27 chr12 59798986 59799808 -84482681 - MER52C LTR ERV1 -144 1134 1 1469 151 24 77 chr12 59799808 59800106 -84482383 + AluJo SINE Alu 31 312 0 879 225 67 0 chr12 59800106 59800346 -84482143 + L1M4 LINE L1 2515 2770 -3376 1489 169 112 25 chr12 59800346 59800624 -84481865 - AluJo SINE Alu 0 302 1 3757 172 137 30 chr12 59800913 59802365 -84480124 - MER52A LTR ERV1 0 1755 4 228 369 47 7 chr12 59803291 59803440 -84479049 + LTR16B LTR ERVL 115 269 -195 2311 86 17 0 chr12 59803749 59804050 -84478439 - AluY SINE Alu -5 306 1 2126 118 0 73 chr12 59804168 59804498 -84477991 + AluSx SINE Alu 1 306 -6 2256 121 0 3 chr12 59804509 59804814 -84477675 + AluSx SINE Alu 1 304 -8 2145 128 7 0 chr12 59805442 59805739 -84476750 - AluSx SINE Alu -8 304 6 296 243 0 97 chr12 59807169 59807272 -84475217 + L2 LINE L2 3157 3249 -23 1696 149 52 42 chr12 59807278 59807587 -84474902 - AluJo SINE Alu 0 312 1 207 0 0 0 chr12 59807601 59807624 -84474865 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 245 338 18 135 chr12 59807625 59807719 -84474770 - L2 LINE L2 -61 3211 3108 2116 106 38 10 chr12 59807719 59808011 -84474478 - AluSx SINE Alu -11 301 2 245 338 18 135 chr12 59808011 59808180 -84474309 - L2 LINE L2 -164 3108 2994 360 0 0 0 chr12 59808180 59808220 -84474269 + (TG)n Simple_repeat Simple_repeat 2 41 0 245 338 18 135 chr12 59808220 59808295 -84474194 - L2 LINE L2 -278 2994 2912 313 233 41 0 chr12 59808441 59808514 -84473975 - MER2 DNA MER2_type -3 342 267 1176 202 0 4 chr12 59808541 59808769 -84473720 + AluJb SINE Alu 86 312 0 386 207 130 2 chr12 59808773 59808865 -84473624 + L1MC4 LINE L1 1995 6983 -1339 987 136 75 30 chr12 59808877 59809076 -84473413 - MER2 DNA MER2_type -137 208 1 200 279 36 85 chr12 59809086 59809251 -84473238 - L2 LINE L2 -605 2709 2553 425 255 94 40 chr12 59811417 59811566 -84470923 + MIR3 SINE MIR 45 201 -7 267 103 0 0 chr12 59812409 59812448 -84470041 + (TCC)n Simple_repeat Simple_repeat 2 40 0 406 259 122 31 chr12 59812853 59813139 -84469350 + L1ME4a LINE L1 5717 6028 -93 520 230 184 0 chr12 59813143 59813317 -84469172 + MER6B DNA MER2_type 4 209 -1 204 211 0 0 chr12 59813886 59813924 -84468565 + CT-rich Low_complexity Low_complexity 3 40 0 287 336 119 8 chr12 59814013 59814147 -84468342 - L2 LINE L2 -17 3255 3107 1885 151 0 0 chr12 59814363 59814641 -84467848 + AluJo SINE Alu 1 278 -34 192 111 0 0 chr12 59814643 59814679 -84467810 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 30 0 0 0 chr12 59814650 59814680 -84467809 + AT_rich Low_complexity Low_complexity 1 30 0 318 226 401 17 chr12 59814839 59815016 -84467473 + MIR SINE MIR 18 262 0 1372 89 0 0 chr12 59815156 59815324 -84467165 - AluSp SINE Alu -12 301 134 2441 98 0 0 chr12 59815324 59815630 -84466859 - AluSx SINE Alu -6 306 1 884 192 13 0 chr12 59815735 59815886 -84466603 - FRAM SINE Alu -18 158 6 2131 150 0 0 chr12 59815893 59816193 -84466296 - AluSx SINE Alu -12 300 1 2046 135 11 0 chr12 59816365 59816646 -84465843 - AluSx SINE Alu -28 284 1 248 270 63 0 chr12 59816733 59816796 -84465693 + L2 LINE L2 3242 3308 -5 2281 99 7 3 chr12 59817974 59818268 -84464221 - AluSx SINE Alu -17 295 1 1865 125 19 51 chr12 59818268 59818580 -84463909 - AluSx SINE Alu -8 304 3 1827 197 0 3 chr12 59819134 59819433 -84463056 - AluJo SINE Alu -14 298 1 908 142 0 0 chr12 59819443 59819570 -84462919 - FLAM_C SINE Alu -6 127 1 2448 87 0 0 chr12 59819838 59820138 -84462351 + AluSq SINE Alu 1 300 -13 1301 221 71 20 chr12 59820489 59821001 -84461488 - Tigger7 DNA MER2_type -2 2485 1 2439 67 3 32 chr12 59821429 59821742 -84460747 + AluY SINE Alu 1 304 -7 2286 106 7 0 chr12 59823223 59823525 -84458964 + AluSp SINE Alu 1 304 -9 1298 209 54 16 chr12 59823537 59823795 -84458694 + AluJo SINE Alu 1 268 -44 993 170 0 48 chr12 59824144 59824309 -84458180 - AluJo SINE Alu -30 282 126 971 96 82 7 chr12 59824309 59824444 -84458045 + AluSq/x SINE Alu 1 145 -168 2532 81 0 0 chr12 59824445 59824752 -84457737 + AluY SINE Alu 1 307 -4 1685 157 52 17 chr12 59824794 59825081 -84457408 + AluJb SINE Alu 2 298 -14 2224 68 7 0 chr12 59825123 59825439 -84457050 + AluY SINE Alu 1 318 0 2286 118 0 0 chr12 59825449 59825755 -84456734 + AluSp SINE Alu 1 306 -7 2347 76 0 41 chr12 59827561 59827731 -84454758 - AluY SINE Alu -8 303 150 2686 46 0 0 chr12 59827731 59828033 -84454456 - AluY SINE Alu -9 302 1 2347 76 0 41 chr12 59828033 59828177 -84454312 - AluY SINE Alu -161 150 2 477 335 32 6 chr12 59828297 59828455 -84454034 - MIR3 SINE MIR -7 201 40 1761 187 3 20 chr12 59828892 59829191 -84453298 + AluJb SINE Alu 1 294 -18 22 80 0 0 chr12 59829220 59829270 -84453219 + AT_rich Low_complexity Low_complexity 1 50 0 2243 130 3 0 chr12 59829439 59829747 -84452742 - AluSx SINE Alu -2 310 2 225 108 0 0 chr12 59829771 59829808 -84452681 + (TTA)n Simple_repeat Simple_repeat 3 39 0 959 162 0 7 chr12 59829814 59829962 -84452527 - FRAM SINE Alu -30 146 1 1373 153 149 4 chr12 59830230 59830471 -84452018 + AluSx SINE Alu 1 276 -36 1937 160 24 0 chr12 59830485 59830778 -84451711 + AluJo SINE Alu 3 302 -10 1386 188 20 4 chr12 59830778 59831023 -84451466 - AluJb SINE Alu -63 249 1 421 259 223 0 chr12 59831023 59831162 -84451327 - MIR SINE MIR -71 191 22 2154 125 13 6 chr12 59831398 59831709 -84450780 - AluSp SINE Alu 0 313 1 1046 112 0 0 chr12 59831709 59831843 -84450646 - AluSq/x SINE Alu -177 136 3 1591 154 6 90 chr12 59831852 59832163 -84450326 - AluJb SINE Alu -27 285 1 1047 195 0 0 chr12 59832301 59832475 -84450014 - FAM SINE Alu -1 174 1 2529 76 0 0 chr12 59832484 59832788 -84449701 - AluY SINE Alu -7 304 1 1803 148 3 66 chr12 59832888 59833205 -84449284 + AluJo SINE Alu 2 298 -14 1703 113 0 0 chr12 59833251 59833472 -84449017 + AluSg/x SINE Alu 83 303 -7 278 247 81 117 chr12 59833491 59833636 -84448853 + MIR SINE MIR 47 183 -79 1067 114 361 40 chr12 59833636 59833863 -84448626 + AluSg SINE Alu 1 300 0 278 247 81 117 chr12 59833863 59833940 -84448549 + MIR SINE MIR 183 261 -1 1551 81 0 0 chr12 59834924 59835110 -84447379 + AluSq SINE Alu 1 186 -127 317 133 17 0 chr12 59835110 59835170 -84447319 + AluS SINE Alu 233 293 -7 1984 157 0 7 chr12 59837513 59837812 -84444677 - AluJb SINE Alu -15 297 1 2263 112 3 0 chr12 59838271 59838567 -84443922 + AluSp SINE Alu 1 297 -16 1574 112 0 9 chr12 59838851 59839065 -84443424 - AluSg/x SINE Alu -16 296 85 1480 147 52 32 chr12 59840139 59840390 -84442099 - AluJb SINE Alu -56 256 1 232 364 78 16 chr12 59840425 59840554 -84441935 - MER5A DNA MER1_type -4 185 49 2385 59 7 26 chr12 59840588 59840895 -84441594 - AluY SINE Alu -10 301 1 787 175 32 0 chr12 59840899 59841025 -84441464 - FLAM_C SINE Alu -3 130 1 2359 109 0 3 chr12 59841033 59841336 -84441153 - AluSx SINE Alu -10 302 1 276 229 21 73 chr12 59841380 59841476 -84441013 + L2 LINE L2 3223 3313 0 470 313 151 42 chr12 59841577 59841861 -84440628 + L2 LINE L2 2958 3272 0 2566 71 0 0 chr12 59841940 59842251 -84440238 - AluY SINE Alu 0 311 1 1759 160 33 27 chr12 59842558 59842858 -84439631 + AluJo SINE Alu 1 302 -10 2171 73 4 4 chr12 59845427 59845699 -84436790 + AluSp SINE Alu 2 273 -40 404 125 0 75 chr12 59845826 59845906 -84436583 + Alu SINE Alu 238 311 -1 545 103 0 13 chr12 59845953 59846031 -84436458 + AluS SINE Alu 1 77 -236 2622 74 0 0 chr12 59848424 59848735 -84433754 - AluSx SINE Alu -1 311 1 203 338 57 14 chr12 59848856 59848962 -84433527 + MIR SINE MIR 21 121 -94 2399 90 3 0 chr12 59849604 59849904 -84432585 + AluSp SINE Alu 2 302 -11 1894 138 43 0 chr12 59849908 59850190 -84432299 + AluJo SINE Alu 1 294 -18 329 346 0 23 chr12 59851570 59851700 -84430789 + (CCCTAG)n Simple_repeat Simple_repeat 1 127 0 475 243 129 14 chr12 59851814 59851954 -84430535 + MIR SINE MIR 2 157 -105 447 291 61 30 chr12 59852012 59852177 -84430312 + MIR SINE MIR 74 243 -19 2243 106 6 19 chr12 59852177 59852313 -84430176 + AluSx SINE Alu 1 137 -175 2405 87 0 10 chr12 59852313 59852612 -84429877 + AluSg SINE Alu 1 296 -14 2243 106 6 19 chr12 59852612 59852787 -84429702 + AluSx SINE Alu 137 308 -4 1830 155 19 35 chr12 59852797 59853114 -84429375 + AluJb SINE Alu 1 312 0 1405 171 126 19 chr12 59853125 59853388 -84429101 + AluSg SINE Alu 2 292 -18 259 287 27 73 chr12 59853876 59854026 -84428463 + MIR3 SINE MIR 58 200 -8 206 315 112 11 chr12 59854625 59854714 -84427775 + MIR SINE MIR 19 116 -92 2007 153 0 7 chr12 59854779 59855079 -84427410 - AluJb SINE Alu -14 298 1 2415 93 3 0 chr12 59855090 59855390 -84427099 - AluSx SINE Alu -11 301 1 565 280 110 30 chr12 59855435 59855671 -84426818 + MIR SINE MIR 8 262 0 2599 60 3 0 chr12 59855673 59855975 -84426514 - AluY SINE Alu -8 303 1 2327 118 0 0 chr12 59857355 59857661 -84424828 + AluSx SINE Alu 1 306 -6 205 268 0 0 chr12 59857928 59857969 -84424520 + MER91 DNA MER1_type 1 41 -99 540 271 118 27 chr12 59858060 59858281 -84424208 + MIR SINE MIR 8 248 -14 1050 215 0 65 chr12 59859270 59859482 -84423007 - MIR SINE MIR -31 231 36 2182 105 7 30 chr12 59859482 59859786 -84422703 - AluSx SINE Alu -15 297 1 1050 215 0 65 chr12 59859786 59859820 -84422669 - MIR SINE MIR -226 36 1 22 0 0 0 chr12 59859823 59859845 -84422644 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr12 59859937 59859959 -84422530 + (T)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr12 59859962 59859982 -84422507 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 376 89 18 0 chr12 59859982 59860038 -84422451 - U7 snRNA snRNA -6 57 1 541 211 48 0 chr12 59860068 59860172 -84422317 + FLAM_C SINE Alu 6 114 -29 261 0 0 0 chr12 59860172 59860201 -84422288 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 602 179 0 26 chr12 59860278 59860395 -84422094 - FLAM_A SINE Alu 0 142 29 1657 163 0 65 chr12 59860420 59860573 -84421916 - AluJo SINE Alu -25 287 162 2240 116 7 0 chr12 59860573 59860867 -84421622 - AluSx SINE Alu -14 298 3 1657 163 0 65 chr12 59860867 59861020 -84421469 - AluJo SINE Alu -150 162 1 23 0 0 0 chr12 59861039 59861062 -84421427 + AT_rich Low_complexity Low_complexity 1 23 0 275 272 103 36 chr12 59861173 59861299 -84421190 + L1ME4a LINE L1 5720 5865 -256 2342 99 0 10 chr12 59861299 59861605 -84420884 + AluSx SINE Alu 1 304 -3 225 0 0 0 chr12 59861605 59861630 -84420859 + (TA)n Simple_repeat Simple_repeat 1 25 0 275 272 103 36 chr12 59861635 59861703 -84420786 + L1ME4a LINE L1 5865 5927 -194 22 35 0 0 chr12 59861776 59861805 -84420684 + AT_rich Low_complexity Low_complexity 1 29 0 237 186 0 0 chr12 59864345 59864388 -84418101 - L1ME4a LINE L1 -105 6016 5974 708 211 52 31 chr12 59864419 59864613 -84417876 - MER46A DNA MER2_type -38 198 1 * 799 177 14 0 chr12 59864474 59864615 -84417874 + MER46A DNA MER2_type 4 146 -90 2203 124 3 10 chr12 59864615 59864921 -84417568 - AluSq SINE Alu -2 311 8 2323 84 0 17 chr12 59864934 59865233 -84417256 - AluY SINE Alu -17 294 1 233 195 130 101 chr12 59865249 59865290 -84417199 - L1MC5 LINE L1 -11 7950 7912 1910 159 33 3 chr12 59865290 59865591 -84416898 - AluJb SINE Alu -2 310 1 233 195 130 101 chr12 59865591 59865718 -84416771 - L1MC5 LINE L1 -49 7912 7777 2474 96 0 0 chr12 59865822 59866134 -84416355 - AluSx SINE Alu 0 312 1 987 142 0 0 chr12 59866357 59866498 -84415991 + AluSg/x SINE Alu 154 294 -16 240 276 10 51 chr12 59866761 59866859 -84415630 + HAL1 LINE L1 2414 2507 0 847 138 0 31 chr12 59866882 59867012 -84415477 + FLAM_C SINE Alu 1 126 -7 185 342 51 0 chr12 59867229 59867308 -84415181 + MIR SINE MIR 82 164 -98 2153 125 0 3 chr12 59868168 59868473 -84414016 - AluJb SINE Alu -8 304 1 281 354 40 49 chr12 59868489 59868715 -84413774 - MIR SINE MIR -38 224 1 1853 174 3 0 chr12 59869882 59870181 -84412308 - AluJo SINE Alu -12 300 1 2316 93 3 0 chr12 59870670 59870800 -84411689 + AluSg SINE Alu 1 129 -181 243 0 0 0 chr12 59870800 59870827 -84411662 + (TA)n Simple_repeat Simple_repeat 2 28 0 2316 93 3 0 chr12 59870827 59870987 -84411502 + AluSg SINE Alu 129 292 -18 183 305 114 29 chr12 59872098 59872203 -84410286 + L2 LINE L2 1360 1473 -1841 1191 156 0 0 chr12 59872437 59872616 -84409873 - AluSg/x SINE Alu 0 310 132 2213 122 7 7 chr12 59872616 59872919 -84409570 - AluSx SINE Alu -7 305 3 2351 91 3 13 chr12 59873049 59873357 -84409132 - AluSp SINE Alu -8 305 1 1419 152 8 21 chr12 59873387 59873624 -84408865 + AluJb SINE Alu 39 272 -40 372 240 133 50 chr12 59874087 59874303 -84408186 + L1MC4a LINE L1 5842 6030 -1778 524 284 213 0 chr12 59874363 59874588 -84407901 + L1ME4a LINE L1 5754 6026 -95 1964 154 0 26 chr12 59874618 59874924 -84407565 - AluJb SINE Alu -14 298 1 752 104 37 15 chr12 59874937 59875072 -84407417 - L1MA5A LINE L1 -4 6293 6156 2066 87 102 0 chr12 59875118 59875393 -84407096 + AluSx SINE Alu 1 303 -9 2163 100 0 59 chr12 59875917 59876237 -84406252 + AluSx SINE Alu 1 301 -11 194 227 30 91 chr12 59878533 59878599 -84403890 + L2 LINE L2 3193 3254 -18 * 412 258 181 11 chr12 59878595 59878777 -84403712 - MIR SINE MIR 0 262 50 2203 105 3 3 chr12 59878960 59879256 -84403233 - AluSq SINE Alu -11 302 7 225 260 14 0 chr12 59880334 59880407 -84402082 - L1MEc LINE L1 -3720 2495 2422 1963 151 0 3 chr12 59880407 59880712 -84401777 - AluSg SINE Alu -6 304 1 751 167 25 0 chr12 59880743 59880863 -84401626 - FLAM_C SINE Alu -19 124 2 1206 199 22 34 chr12 59880864 59881178 -84401311 - L1MEc LINE L1 -3924 2472 2161 2500 95 0 0 chr12 59881178 59881484 -84401005 - AluY SINE Alu -5 306 1 1206 199 22 34 chr12 59881484 59881526 -84400963 - L1MEc LINE L1 -4235 2161 2120 216 0 0 0 chr12 59881530 59881554 -84400935 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 854 213 7 0 chr12 59881558 59881708 -84400781 - AluJo/FRAM SINE Alu -25 287 137 1668 124 66 8 chr12 59881708 59881949 -84400540 - AluJo SINE Alu -14 298 44 2077 134 0 3 chr12 59881976 59882285 -84400204 - AluSx SINE Alu 0 308 1 1741 190 3 16 chr12 59882285 59882596 -84399893 - AluJb SINE Alu -5 307 1 2339 81 7 3 chr12 59882802 59883099 -84399390 - AluSp SINE Alu -15 298 1 1898 142 47 0 chr12 59883549 59883845 -84398644 + AluSx SINE Alu 1 310 -2 248 167 93 19 chr12 59884009 59884063 -84398426 + L2 LINE L2 3255 3312 -1 2174 148 0 0 chr12 59884380 59884684 -84397805 - AluSx SINE Alu -8 304 1 1138 245 18 61 chr12 59884759 59885001 -84397488 - L1MC/D LINE L1 -2082 5726 5475 2305 100 0 17 chr12 59885001 59885301 -84397188 - AluSx SINE Alu -17 295 1 1138 245 18 61 chr12 59885301 59885364 -84397125 - L1MC/D LINE L1 -2333 5475 5411 2317 92 23 0 chr12 59885364 59885669 -84396820 - AluSp SINE Alu -1 312 1 1138 245 18 61 chr12 59885669 59885846 -84396643 - L1MC/D LINE L1 -2397 5411 5262 1703 192 18 7 chr12 59885846 59886013 -84396476 - AluJo SINE Alu -23 289 116 180 0 0 0 chr12 59886013 59886033 -84396456 + (TG)n Simple_repeat Simple_repeat 1 20 0 1703 192 18 7 chr12 59886033 59886151 -84396338 - AluJo SINE Alu -196 116 1 684 305 0 31 chr12 59886190 59886482 -84396007 - AluY SINE Alu -1 310 28 31 44 0 0 chr12 59886769 59886814 -84395675 + GC_rich Low_complexity Low_complexity 1 45 0 304 262 113 0 chr12 59887075 59887216 -84395273 - L1MC4a LINE L1 -1911 5897 5741 241 279 0 0 chr12 59887227 59887288 -84395201 - MER94 DNA DNA 0 134 74 198 0 0 0 chr12 59887288 59887310 -84395179 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 7978 70 4 13 chr12 59887312 59888328 -84394161 + LTR13 LTR ERVK 1 1007 0 5868 218 17 45 chr12 59888332 59889860 -84392629 - HERVK13 LTR ERVK -5669 2447 963 276 177 145 0 chr12 59890558 59890620 -84391869 - HERVK13 LTR ERVK -7284 832 762 3067 215 27 17 chr12 59890738 59891449 -84391040 - HERVK13 LTR ERVK -7398 718 1 6505 77 7 22 chr12 59891449 59892368 -84390121 - LTR13 LTR ERVK 0 1007 103 6085 110 65 39 chr12 59892600 59894561 -84387928 + SVA Other Other 266 1386 0 234 204 19 0 chr12 59895258 59895312 -84387177 + L1MC5 LINE L1 7179 7233 -728 * 379 215 8 41 chr12 59895308 59895429 -84387060 + L1M4 LINE L1 3652 3768 -2378 2467 87 0 6 chr12 59895438 59895749 -84386740 - AluSc SINE Alu 0 309 1 1430 157 0 9 chr12 59896017 59896247 -84386242 + AluJb SINE Alu 85 312 0 2402 43 3 33 chr12 59896396 59896695 -84385794 + AluY SINE Alu 1 290 -21 1185 72 0 26 chr12 59896807 59896959 -84385530 - AluSg1 SINE Alu -161 148 1 1039 113 0 7 chr12 59896995 59897137 -84385352 - AluJo SINE Alu -171 141 1 368 226 44 36 chr12 59897139 59897175 -84385314 - L1M4 LINE L1 -2269 3877 3843 2600 54 3 0 chr12 59897175 59897472 -84385017 - AluY SINE Alu -13 298 1 368 226 44 36 chr12 59897472 59897572 -84384917 - L1M4 LINE L1 -2303 3843 3740 810 176 0 0 chr12 59897575 59897706 -84384783 - FLAM_C SINE Alu -2 131 1 227 226 11 89 chr12 59897771 59897961 -84384528 + (CCCCG)n Simple_repeat Simple_repeat 3 177 0 * 288 193 22 52 chr12 59897828 59897963 -84384526 + (CCGCG)n Simple_repeat Simple_repeat 4 134 0 24 77 0 0 chr12 59898042 59898094 -84384395 + GC_rich Low_complexity Low_complexity 1 52 0 297 278 28 33 chr12 59898176 59898356 -84384133 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 976 139 0 0 chr12 59898480 59898617 -84383872 - FLAM_C SINE Alu -6 137 1 662 103 0 21 chr12 59898664 59898761 -84383728 + AluJb SINE Alu 49 143 -169 2196 107 3 13 chr12 59898762 59899062 -84383427 + AluSx SINE Alu 1 297 -15 1816 172 114 26 chr12 59899063 59899517 -84382972 - MER51D LTR ERV1 -89 568 75 186 43 0 0 chr12 59900409 59900432 -84382057 + (T)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr12 59900679 59900704 -84381785 + AT_rich Low_complexity Low_complexity 1 25 0 697 280 29 21 chr12 59900704 59900983 -84381506 - AluSx SINE Alu -25 287 7 2047 118 4 0 chr12 59901407 59901679 -84380810 - AluSx SINE Alu -39 273 1 450 94 0 0 chr12 59901723 59901787 -84380702 + (TCC)n Simple_repeat Simple_repeat 3 66 0 2066 154 3 3 chr12 59901791 59902102 -84380387 - AluSx SINE Alu -1 311 1 802 255 3 48 chr12 59902103 59902420 -84380069 - L1MC5 LINE L1 -808 7153 6875 733 148 78 16 chr12 59902437 59902565 -84379924 - AluJo SINE Alu -176 136 1 334 176 27 27 chr12 59902569 59902643 -84379846 - L1MC5 LINE L1 -1086 6875 6802 * 507 279 73 11 chr12 59902627 59902806 -84379683 - L1MC5 LINE L1 -2101 5707 5518 815 190 72 62 chr12 59902817 59903034 -84379455 - AluJo SINE Alu 0 304 86 506 170 32 0 chr12 59903034 59903128 -84379361 - L1MC5 LINE L1 -2283 5525 5429 2518 46 0 10 chr12 59903128 59903434 -84379055 - AluY SINE Alu -8 303 1 884 161 0 0 chr12 59903531 59903655 -84378834 + AluJ SINE Alu 1 124 -188 23 54 0 0 chr12 59905883 59905920 -84376569 + AT_rich Low_complexity Low_complexity 1 37 0 1047 184 0 0 chr12 59905920 59906094 -84376395 + AluJ SINE Alu 132 305 -7 241 294 59 0 chr12 59906412 59906497 -84375992 - MIR SINE MIR -102 160 71 2156 130 3 0 chr12 59906871 59907164 -84375325 + AluSx SINE Alu 1 294 -18 1178 158 0 51 chr12 59907356 59907571 -84374918 + AluJb SINE Alu 1 204 -108 2424 80 0 7 chr12 59907686 59907985 -84374504 - AluY SINE Alu -14 297 1 407 304 40 8 chr12 59908045 59908170 -84374319 - L2 LINE L2 0 3313 3185 2213 103 3 3 chr12 59908299 59908589 -84373900 - AluSx SINE Alu -22 290 1 344 334 14 12 chr12 59908971 59909003 -84373486 + MIR SINE MIR 3 33 -175 2423 106 0 0 chr12 59909003 59909314 -84373175 + AluSx SINE Alu 1 311 -1 344 334 14 12 chr12 59909314 59909426 -84373063 + MIR SINE MIR 33 149 -59 292 170 0 149 chr12 59909504 59909598 -84372891 + MER116 DNA Mariner 1 80 0 2489 85 0 0 chr12 59910309 59910604 -84371885 - AluSx SINE Alu -17 295 1 1675 192 0 7 chr12 59910926 59911212 -84371277 - AluJb SINE Alu 0 312 29 1501 156 0 78 chr12 59911613 59911908 -84370581 + AluJb SINE Alu 20 291 -21 2283 122 3 0 chr12 59912066 59912377 -84370112 + AluSx SINE Alu 1 312 0 180 0 0 0 chr12 59912555 59912575 -84369914 + (TA)n Simple_repeat Simple_repeat 2 21 0 2091 99 46 7 chr12 59912576 59912860 -84369629 + AluSx SINE Alu 1 295 -17 2070 110 30 23 chr12 59913872 59914172 -84368317 + AluSx SINE Alu 1 302 -10 216 0 0 0 chr12 59914229 59914253 -84368236 + (T)n Simple_repeat Simple_repeat 1 24 0 356 248 0 16 chr12 59914609 59914738 -84367751 + CT-rich Low_complexity Low_complexity 4 130 0 915 244 50 21 chr12 59915919 59916202 -84366287 + L1MA9 LINE L1 5984 6274 -38 1999 116 72 0 chr12 59916227 59916503 -84365986 + AluSx SINE Alu 1 296 -16 229 219 37 12 chr12 59916533 59916615 -84365874 + (TA)n Simple_repeat Simple_repeat 2 85 0 2031 122 20 10 chr12 59917139 59917443 -84365046 - AluSx SINE Alu -5 307 1 2350 86 0 13 chr12 59917447 59917750 -84364739 - AluSx SINE Alu -13 299 1 25 31 0 0 chr12 59917752 59917784 -84364705 + AT_rich Low_complexity Low_complexity 1 32 0 1870 146 7 0 chr12 59917940 59918248 -84364241 - AluSx SINE Alu 0 310 1 180 0 0 0 chr12 59918249 59918269 -84364220 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 514 231 0 0 chr12 59918269 59918373 -84364116 - FRAM SINE Alu -29 147 44 2255 101 0 3 chr12 59918389 59918687 -84363802 - AluSx SINE Alu -11 301 5 2077 121 0 0 chr12 59918767 59919072 -84363417 + AluSx SINE Alu 15 319 0 2262 115 0 6 chr12 59920059 59920373 -84362116 + AluSq SINE Alu 1 312 -1 1960 154 3 3 chr12 59920697 59920995 -84361494 + AluJb SINE Alu 1 298 -14 312 353 30 0 chr12 59921029 59921196 -84361293 - L2 LINE L2 -1366 1948 1777 675 167 49 2 chr12 59921218 59921385 -84361104 + L1MB8 LINE L1 5308 5495 -689 1392 134 35 30 chr12 59921443 59921674 -84360815 + AluJb SINE Alu 69 300 -12 3667 122 44 42 chr12 59921688 59922001 -84360488 + L1MB8 LINE L1 5508 5819 -359 1717 152 19 51 chr12 59922001 59922359 -84360130 + AluJb SINE Alu 1 312 0 3667 122 44 42 chr12 59922359 59922646 -84359843 + L1MB8 LINE L1 5819 6112 -66 1856 127 34 27 chr12 59922646 59922938 -84359551 - AluJo SINE Alu -18 294 1 3667 122 44 42 chr12 59922938 59923001 -84359488 + L1MB8 LINE L1 6112 6173 -5 214 225 0 56 chr12 59923008 59923079 -84359410 - L2 LINE L2 -1548 1766 1700 2057 153 3 0 chr12 59923082 59923389 -84359100 - AluJb SINE Alu -4 308 1 230 337 40 35 chr12 59923831 59924030 -84358459 + L2 LINE L2 3111 3310 -3 254 310 28 35 chr12 59924167 59924276 -84358213 + MIR SINE MIR 42 151 -111 2078 87 42 7 chr12 59924276 59924564 -84357925 + AluSg SINE Alu 1 298 -12 254 310 28 35 chr12 59924564 59924599 -84357890 + MIR SINE MIR 151 185 -77 1995 126 11 7 chr12 59924668 59924954 -84357535 + AluSq SINE Alu 1 287 -26 377 212 55 116 chr12 59924977 59924991 -84357498 + L2 LINE L2 1698 1711 -1603 2350 95 3 13 chr12 59924991 59925307 -84357182 + AluSq SINE Alu 1 313 0 377 212 55 116 chr12 59925307 59925438 -84357051 + L2 LINE L2 1711 1834 -1480 1118 141 0 0 chr12 59925652 59925837 -84356652 - AluJb SINE Alu 0 313 129 1929 147 0 3 chr12 59925840 59926132 -84356357 - AluJo SINE Alu -21 291 1 2263 132 0 0 chr12 59926140 59926451 -84356038 - AluSx SINE Alu 0 312 2 385 179 60 0 chr12 59926477 59926544 -84355945 - L1M3f LINE L1 -5256 72 2 22 56 0 0 chr12 59926617 59926653 -84355836 + AT_rich Low_complexity Low_complexity 1 36 0 603 220 168 6 chr12 59926655 59926828 -84355661 - MIR SINE MIR -61 201 1 847 286 45 43 chr12 59926853 59927273 -84355216 - L1ME3A LINE L1 -273 5897 5477 2116 249 23 53 chr12 59927273 59927374 -84355115 + L2 LINE L2 1822 1925 -1389 2296 89 0 3 chr12 59927374 59927678 -84354811 - AluY SINE Alu -8 303 1 2116 249 23 53 chr12 59927678 59927954 -84354535 + L2 LINE L2 1925 2208 -1106 1154 286 3 0 chr12 59927954 59928251 -84354238 + AluSx SINE Alu 5 302 0 2116 249 23 53 chr12 59928251 59928571 -84353918 + L2 LINE L2 2208 2499 -815 2305 109 3 13 chr12 59928655 59928967 -84353522 + AluSq SINE Alu 3 311 -2 347 135 0 0 chr12 59928967 59929019 -84353470 + AluS SINE Alu 29 80 -222 1073 113 7 0 chr12 59929020 59929162 -84353327 - AluJb SINE Alu -169 143 1 323 133 0 17 chr12 59929236 59929296 -84353193 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 2182 120 0 3 chr12 59929296 59929605 -84352884 - AluSg SINE Alu -2 308 1 4496 127 57 47 chr12 59929613 59929661 -84352828 - L1MB2 LINE L1 -2 6169 6123 2200 116 0 13 chr12 59929661 59929963 -84352526 - AluSx SINE Alu -14 298 1 4496 127 57 47 chr12 59929963 59930757 -84351732 - L1MB2 LINE L1 -48 6123 5319 2131 116 0 3 chr12 59930759 59931066 -84351423 - AluSq SINE Alu 0 306 1 243 245 0 0 chr12 59931105 59931154 -84351335 - Alu SINE Alu -138 165 117 1254 172 19 34 chr12 59931156 59931199 -84351290 - L1MB2 LINE L1 -1553 4593 4551 2403 62 16 33 chr12 59931199 59931506 -84350983 - AluSg SINE Alu -8 302 1 1254 172 19 34 chr12 59931506 59931730 -84350759 - L1MB2 LINE L1 -1595 4551 4330 2280 108 0 3 chr12 59931739 59932036 -84350453 - AluSx SINE Alu -16 296 1 765 249 62 19 chr12 59932089 59932346 -84350143 - HAL1 LINE L1 -226 2281 2014 954 84 0 30 chr12 59932386 59932517 -84349972 - AluSp/q SINE Alu -14 299 173 465 296 160 52 chr12 59932593 59932999 -84349490 + L2 LINE L2 2864 3313 0 237 197 0 0 chr12 59933042 59933108 -84349381 + (TATG)n Simple_repeat Simple_repeat 2 67 0 1577 174 11 32 chr12 59933117 59933399 -84349090 - AluJo SINE Alu -36 276 1 367 280 160 8 chr12 59933411 59933536 -84348953 - MIR SINE MIR -74 188 45 2008 162 0 0 chr12 59933538 59933835 -84348654 + AluJo SINE Alu 1 297 -15 25 31 0 0 chr12 59934676 59934708 -84347781 + AT_rich Low_complexity Low_complexity 1 32 0 1752 142 10 61 chr12 59934775 59935086 -84347403 - AluJb SINE Alu -17 295 1 1801 182 0 3 chr12 59935258 59935571 -84346918 - AluJo SINE Alu 0 312 1 1232 181 133 15 chr12 59935599 59935894 -84346595 - AluSx SINE Alu 0 302 1 1045 102 0 72 chr12 59935906 59936073 -84346416 - AluSg/x SINE Alu -21 289 135 3376 87 2 2 chr12 59936105 59936556 -84345933 - L1PB2 LINE L1 -7 6144 5694 2364 173 19 46 chr12 59936569 59937111 -84345378 - L1MB8 LINE L1 0 6178 5652 997 191 6 0 chr12 59937113 59937281 -84345208 - FRAM SINE Alu -7 169 1 1354 73 0 0 chr12 59937293 59937457 -84345032 - AluY SINE Alu -6 305 142 267 141 62 45 chr12 59937471 59937648 -84344841 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 23 33 0 0 chr12 59937651 59937681 -84344808 + AT_rich Low_complexity Low_complexity 1 30 0 529 75 0 0 chr12 59937681 59937748 -84344741 - AluY SINE Alu -179 132 66 1343 135 5 10 chr12 59937749 59937949 -84344540 - AluSx SINE Alu -113 199 1 1389 186 29 29 chr12 59937950 59938224 -84344265 - L1MB8 LINE L1 -505 5679 5406 2142 101 13 19 chr12 59938248 59938555 -84343934 + AluSq SINE Alu 1 305 -8 225 167 93 19 chr12 59938867 59938921 -84343568 - L2 LINE L2 -1 3312 3255 1844 145 47 0 chr12 59939085 59939381 -84343108 - AluSx SINE Alu -2 310 1 773 139 0 16 chr12 59939591 59939720 -84342769 + FRAM SINE Alu 33 159 -17 2105 126 0 7 chr12 59939876 59940177 -84342312 - AluSq SINE Alu -14 299 1 2371 88 0 3 chr12 59940187 59940481 -84342008 - AluSg SINE Alu -17 293 1 2400 69 0 20 chr12 59940491 59940794 -84341695 - AluY SINE Alu -12 299 3 849 130 0 15 chr12 59940992 59941123 -84341366 + FLAM_C SINE Alu 5 133 0 1743 104 44 0 chr12 59941132 59941381 -84341108 + AluY SINE Alu 1 260 -51 2276 109 0 3 chr12 59942051 59942345 -84340144 + AluSx SINE Alu 1 293 -19 24 0 0 0 chr12 59942369 59942393 -84340096 + AT_rich Low_complexity Low_complexity 1 24 0 2409 68 14 0 chr12 59942955 59943248 -84339241 + AluY SINE Alu 3 299 -12 901 181 150 16 chr12 59943619 59943812 -84338677 + MER20 DNA MER1_type 1 219 0 492 177 186 18 chr12 59943979 59944092 -84338397 + AluJo SINE Alu 2 133 -179 228 354 0 0 chr12 59944436 59944515 -84337974 + L2 LINE L2 3193 3271 -1 660 205 0 8 chr12 59944753 59944880 -84337609 + AluJo SINE Alu 121 246 -66 2314 89 13 0 chr12 59945145 59945449 -84337040 - AluSq SINE Alu -5 308 1 527 16 16 0 chr12 59945602 59945666 -84336823 + AluY SINE Alu 13 77 -233 2331 91 7 10 chr12 59945785 59946094 -84336395 - AluSq SINE Alu -5 308 1 2314 84 7 3 chr12 59946544 59946841 -84335648 + AluSp SINE Alu 1 298 -15 1988 158 3 16 chr12 59947047 59947358 -84335131 + AluJb SINE Alu 1 307 -5 2190 137 0 3 chr12 59947358 59947671 -84334818 + AluSx SINE Alu 1 312 0 1687 124 64 8 chr12 59947694 59947943 -84334546 + AluJo SINE Alu 44 306 -6 256 331 35 7 chr12 59948319 59948461 -84334028 - L2 LINE L2 -550 2764 2619 2043 105 4 0 chr12 59948605 59948872 -84333617 + AluSx SINE Alu 1 268 -44 1743 146 61 0 chr12 59949376 59949656 -84332833 + AluJb SINE Alu 1 297 -15 2176 99 41 0 chr12 59949722 59950014 -84332475 - AluSx SINE Alu -8 304 1 510 191 0 0 chr12 59950046 59950130 -84332359 - AluJ SINE Alu -109 203 120 1946 132 4 0 chr12 59950159 59950425 -84332064 - AluSx SINE Alu -45 267 1 973 123 0 22 chr12 59950425 59950563 -84331926 - AluJ SINE Alu -176 136 2 2317 118 0 0 chr12 59950616 59950920 -84331569 - AluSx SINE Alu -8 304 1 2977 115 32 0 chr12 59951099 59951533 -84330956 + L1PA10 LINE L1 5710 6157 -11 30 27 0 0 chr12 59951535 59951572 -84330917 + AT_rich Low_complexity Low_complexity 1 37 0 604 293 78 11 chr12 59951594 59951864 -84330625 - L1MC4a LINE L1 -1918 5890 5603 1353 106 0 0 chr12 59952083 59952263 -84330226 + AluSp SINE Alu 130 309 -4 500 193 0 0 chr12 59952270 59952353 -84330136 + AluJ/FLAM SINE Alu 2 84 -228 1695 174 3 39 chr12 59952601 59952911 -84329578 - AluJb SINE Alu -13 299 1 697 191 0 0 chr12 59952911 59953037 -84329452 - FLAM_A SINE Alu -3 130 5 1989 106 25 14 chr12 59953198 59953480 -84329009 - AluSx SINE Alu -19 293 9 1109 143 6 12 chr12 59953491 59953659 -84328830 + FRAM SINE Alu 1 160 -16 768 105 57 32 chr12 59953726 59953850 -84328639 + FLAM_C SINE Alu 8 134 -9 2352 100 0 3 chr12 59953975 59954274 -84328215 - AluSx SINE Alu -14 298 1 197 333 16 0 chr12 59954488 59954551 -84327938 - L2 LINE L2 -56 3216 3153 2538 71 3 3 chr12 59955324 59955635 -84326854 - AluSp SINE Alu 0 313 3 2323 92 3 10 chr12 59955637 59955943 -84326546 - AluY SINE Alu -7 304 1 2247 112 3 0 chr12 59955943 59956238 -84326251 - AluSx SINE Alu -6 306 11 237 132 0 0 chr12 59956442 59956480 -84326009 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 1734 176 3 37 chr12 59956480 59956803 -84325686 - AluJb SINE Alu 0 312 1 697 191 0 0 chr12 59956803 59956929 -84325560 - FLAM_A SINE Alu -3 130 5 2298 84 0 20 chr12 59957090 59957389 -84325100 - AluSx SINE Alu -19 293 1 2066 113 14 3 chr12 59957455 59957747 -84324742 - AluSx SINE Alu -17 295 1 1034 126 0 0 chr12 59957751 59957886 -84324603 - AluJo SINE Alu -175 137 3 5117 104 1 13 chr12 59957953 59958702 -84323787 - L1PA13 LINE L1 -4 6159 5420 1941 123 3 45 chr12 59958702 59959011 -84323478 - AluSg SINE Alu -14 296 1 2215 71 0 4 chr12 59959032 59959298 -84323191 - AluY SINE Alu -46 265 1 689 154 82 0 chr12 59959823 59959933 -84322556 - FLAM_A SINE Alu -14 119 1 2502 75 0 3 chr12 59960031 59960336 -84322153 + AluY SINE Alu 1 304 -7 965 139 0 0 chr12 59960846 59960975 -84321514 + FLAM_C SINE Alu 1 129 -14 30 0 0 0 chr12 59960976 59961006 -84321483 + AT_rich Low_complexity Low_complexity 1 30 0 1285 113 11 22 chr12 59961250 59961435 -84321054 - AluSx SINE Alu -124 188 6 423 108 0 217 chr12 59961472 59961563 -84320926 + MER2 DNA MER2_type 4 65 -280 1794 172 21 3 chr12 59961563 59961854 -84320635 - AluJb SINE Alu -16 296 1 423 108 0 217 chr12 59961854 59961882 -84320607 + MER2 DNA MER2_type 65 97 -248 1869 115 0 0 chr12 59961882 59962126 -84320363 + AluSq SINE Alu 1 244 -69 527 145 0 0 chr12 59962126 59962231 -84320258 + AluSg/x SINE Alu 205 309 0 1281 91 5 11 chr12 59962231 59962417 -84320072 + MER2 DNA MER2_type 90 274 -71 804 137 0 0 chr12 59962425 59962556 -84319933 - L1PA13 LINE L1 -7 6156 6026 1311 121 37 55 chr12 59963686 59963726 -84318763 - LTR37B LTR ERV1 -3 465 426 2270 100 3 3 chr12 59963726 59964026 -84318463 + AluSq SINE Alu 1 300 -13 1311 121 37 55 chr12 59964026 59964258 -84318231 - LTR37B LTR ERV1 -42 426 198 2452 84 0 0 chr12 59964293 59964674 -84317815 + AluSq SINE Alu 1 381 0 1679 162 26 4 chr12 59964744 59965016 -84317473 + AluJo SINE Alu 1 278 -34 625 249 162 10 chr12 59965157 59965354 -84317135 - MIR SINE MIR 0 262 36 2144 125 23 0 chr12 59965716 59966019 -84316470 - AluSx SINE Alu -2 310 1 2432 88 0 0 chr12 59967759 59968066 -84314423 - AluY SINE Alu -4 307 1 2465 93 0 0 chr12 59969196 59969498 -84312991 + AluSx SINE Alu 1 302 -10 940 126 0 0 chr12 59969553 59969680 -84312809 - FLAM_C SINE Alu -6 127 1 1778 218 53 13 chr12 59969727 59970181 -84312308 - MER119 DNA MER1_type -111 472 1 752 203 37 14 chr12 59970185 59970402 -84312087 - Charlie2 DNA MER1_type -37 2825 2604 2202 68 3 71 chr12 59970406 59970717 -84311772 + AluY SINE Alu 1 290 -21 1728 140 4 30 chr12 59970721 59970985 -84311504 + AluJb SINE Alu 36 292 -20 814 183 0 0 chr12 59971369 59971495 -84310994 - FLAM_A SINE Alu -7 126 1 451 307 114 6 chr12 59971591 59971757 -84310732 - MIR SINE MIR -48 214 31 2241 68 3 68 chr12 59972200 59972511 -84309978 + AluSx SINE Alu 1 291 -21 1728 140 4 30 chr12 59972515 59972779 -84309710 + AluJb SINE Alu 36 292 -20 21 0 0 0 chr12 59972914 59972935 -84309554 + AT_rich Low_complexity Low_complexity 1 21 0 2455 87 3 0 chr12 59972945 59973244 -84309245 + AluSp SINE Alu 1 300 -13 1054 195 116 25 chr12 59973247 59973388 -84309101 + Tigger7 DNA MER2_type 2 129 -604 2060 155 3 0 chr12 59973388 59973691 -84308798 + AluSx SINE Alu 1 304 -8 1054 195 116 25 chr12 59973691 59973790 -84308699 + Tigger7 DNA MER2_type 129 264 -469 673 122 0 0 chr12 59973790 59973888 -84308601 + Tigger7 DNA MER2_type 2389 2486 -1 518 130 46 176 chr12 59973890 59974089 -84308400 - Charlie2 DNA MER1_type -276 2586 2415 2201 120 17 7 chr12 59974089 59974388 -84308101 + AluSx SINE Alu 1 302 -10 518 130 46 176 chr12 59974388 59974404 -84308085 - Charlie2 DNA MER1_type -447 2415 2399 2155 119 0 22 chr12 59974454 59974772 -84307717 + AluSq SINE Alu 1 311 -2 926 195 0 0 chr12 59974789 59974979 -84307510 - AluJ SINE Alu 0 318 129 2059 131 3 19 chr12 59975006 59975320 -84307169 - AluSx SINE Alu -3 309 1 785 163 15 15 chr12 59975320 59975455 -84307034 - AluJ SINE Alu -176 136 2 2290 116 0 0 chr12 59975460 59975761 -84306728 - AluSx SINE Alu -11 301 1 926 223 74 57 chr12 59975773 59976015 -84306474 - Charlie2 DNA MER1_type -585 2277 2025 2254 117 3 0 chr12 59976015 59976314 -84306175 + AluSx SINE Alu 1 300 -12 926 223 74 57 chr12 59976314 59976438 -84306051 - Charlie2 DNA MER1_type -837 2025 1905 2421 70 0 13 chr12 59976681 59976982 -84305507 + AluY SINE Alu 1 297 -14 247 302 39 78 chr12 59977149 59977244 -84305245 - MIR SINE MIR -56 206 109 2307 94 0 31 chr12 59977244 59977563 -84304926 - AluSc SINE Alu 0 309 1 2353 106 0 0 chr12 59977563 59977866 -84304623 - AluSx SINE Alu -8 304 2 247 302 39 78 chr12 59977866 59977948 -84304541 - MIR SINE MIR -151 111 35 902 136 19 132 chr12 59979862 59979997 -84302492 + MER5A DNA MER1_type 1 106 -83 1970 95 0 4 chr12 59979997 59980273 -84302216 - AluSx SINE Alu 0 306 32 902 136 19 132 chr12 59980273 59980349 -84302140 + MER5A DNA MER1_type 106 189 0 803 282 79 55 chr12 59980360 59980707 -84301782 - L1MC/D LINE L1 -1989 5819 5453 2450 90 0 0 chr12 59980707 59981007 -84301482 + AluSq SINE Alu 2 301 -12 803 282 79 55 chr12 59981007 59981202 -84301287 - L1MC/D LINE L1 -2355 5453 5264 923 185 21 37 chr12 59981265 59981454 -84301035 - MER5A DNA MER1_type -2 187 2 2091 134 3 3 chr12 59981483 59981782 -84300707 + AluJb SINE Alu 1 299 -13 1469 69 0 0 chr12 59981837 59982010 -84300479 + AluY SINE Alu 1 173 -138 365 247 17 21 chr12 59982146 59982409 -84300080 + CT-rich Low_complexity Low_complexity 1 262 0 279 218 29 35 chr12 59982420 59982739 -84299750 + CT-rich Low_complexity Low_complexity 1 316 0 435 300 12 37 chr12 59982754 59983042 -84299447 + CT-rich Low_complexity Low_complexity 1 280 0 236 30 30 0 chr12 59983046 59983079 -84299410 + (GGGAGA)n Simple_repeat Simple_repeat 1 34 0 248 395 23 38 chr12 59983298 59983561 -84298928 + L2 LINE L2 549 807 -2507 2342 121 10 54 chr12 59983777 59983984 -84298505 + MER1A DNA MER1_type 1 215 -2497 6345 129 27 31 chr12 59983984 59985059 -84297430 + MER11C LTR ERVK 1 1071 0 2342 121 10 54 chr12 59985059 59985071 -84297418 + MER1A DNA MER1_type 215 226 -2486 2388 89 0 16 chr12 59985071 59985387 -84297102 - AluY SINE Alu 0 311 1 2342 121 10 54 chr12 59985387 59985640 -84296849 + MER1A DNA MER1_type 226 528 -11 1872 87 0 4 chr12 59985640 59985869 -84296620 - AluSg SINE Alu -82 228 1 387 280 159 6 chr12 59986003 59986046 -84296443 - L1MC/D LINE L1 -754 5392 5357 2184 96 0 7 chr12 59986046 59986326 -84296163 - AluSx SINE Alu -23 289 12 1226 148 11 168 chr12 59986326 59986548 -84295941 - AluJb SINE Alu -4 298 149 2242 97 0 20 chr12 59986548 59986847 -84295642 + AluSc SINE Alu 1 293 -16 1226 148 11 168 chr12 59986847 59986976 -84295513 - AluJb SINE Alu -153 149 2 387 280 159 6 chr12 59986976 59987167 -84295322 - L1MC/D LINE L1 -788 5358 5199 2474 85 0 0 chr12 59987173 59987479 -84295010 - AluY SINE Alu -5 306 1 2205 127 0 0 chr12 59987485 59987784 -84294705 - AluSg SINE Alu -9 301 3 234 0 0 0 chr12 59987786 59987812 -84294677 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2080 124 3 0 chr12 59987813 59988095 -84294394 - AluSq SINE Alu -29 284 2 1818 175 3 0 chr12 59988098 59988384 -84294105 - AluSx SINE Alu -24 288 2 1529 165 65 7 chr12 59988583 59988862 -84293627 - AluJb SINE Alu -13 299 5 2114 121 17 0 chr12 59988902 59989192 -84293297 - AluSg SINE Alu -15 295 1 450 223 45 0 chr12 59989205 59989317 -84293172 - MER3 DNA MER1_type -72 137 21 915 206 53 6 chr12 59989391 59989561 -84292928 - MER5A DNA MER1_type -11 178 1 2396 99 3 3 chr12 59989922 59990234 -84292255 + AluSp SINE Alu 1 312 -1 1621 150 8 0 chr12 59990247 59990487 -84292002 + AluSx SINE Alu 1 242 -70 207 0 0 0 chr12 59990513 59990536 -84291953 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 2178 120 0 7 chr12 59990666 59990966 -84291523 - AluSx SINE Alu -14 298 1 640 233 0 0 chr12 59990994 59991110 -84291379 - AluJb SINE Alu -68 244 129 781 191 15 0 chr12 59991403 59991534 -84290955 + MER5A DNA MER1_type 1 133 -56 2134 113 3 0 chr12 59991538 59991843 -84290646 - AluSx SINE Alu 0 306 1 287 264 83 0 chr12 59991900 59992021 -84290468 - L1MC/D LINE L1 -1104 5042 4912 2320 124 77 77 chr12 59992098 59992621 -84289868 - L1MB7 LINE L1 -201 5983 5461 1142 112 5 75 chr12 59992621 59992767 -84289722 + AluJb SINE Alu 1 133 -179 2414 74 0 14 chr12 59992767 59993063 -84289426 + AluY SINE Alu 1 292 -19 1142 112 5 75 chr12 59993063 59993103 -84289386 + AluJb SINE Alu 133 174 -138 337 127 0 0 chr12 59993103 59993158 -84289331 + Alu SINE Alu 246 300 -2 604 133 183 0 chr12 59993158 59993278 -84289211 - L1MB7 LINE L1 -701 5473 5332 582 170 0 0 chr12 59993279 59993379 -84289110 - FRAM SINE Alu -5 171 72 2386 101 0 3 chr12 59993704 59994002 -84288487 + AluSq SINE Alu 1 297 -16 553 181 159 14 chr12 59994846 59994984 -84287505 + MER5B DNA MER1_type 21 178 0 816 69 29 0 chr12 59995238 59995340 -84287149 + U6 snRNA snRNA 1 105 -2 892 200 91 48 chr12 59997045 59997255 -84285234 + MER20 DNA MER1_type 1 219 0 22 35 0 0 chr12 59998493 59998522 -84283967 + AT_rich Low_complexity Low_complexity 1 29 0 2553 69 0 0 chr12 59999227 59999531 -84282958 - AluSx SINE Alu -8 304 1 1586 201 10 7 chr12 59999531 59999824 -84282665 - AluJo SINE Alu -16 296 3 1470 135 0 58 chr12 59999851 60000110 -84282379 - AluJb SINE Alu -2 310 67 1076 107 0 0 chr12 60000114 60000254 -84282235 - AluJb SINE Alu -172 140 1 2345 111 0 0 chr12 60000261 60000567 -84281922 - AluSx SINE Alu -6 306 1 21 0 0 0 chr12 60002289 60002310 -84280179 + AT_rich Low_complexity Low_complexity 1 21 0 472 159 0 16 chr12 60004279 60004405 -84278084 + (CA)n Simple_repeat Simple_repeat 1 124 0 267 240 99 68 chr12 60006214 60006360 -84276129 - MIR SINE MIR -63 145 20 238 221 12 12 chr12 60008622 60008708 -84273781 + (CTGGGG)n Simple_repeat Simple_repeat 4 89 0 580 232 209 18 chr12 60009127 60009347 -84273142 - MIR SINE MIR 0 262 1 1662 144 72 4 chr12 60009736 60010014 -84272475 + AluJo SINE Alu 5 301 -11 2362 102 0 0 chr12 60010462 60010756 -84271733 + AluSx SINE Alu 1 294 -18 255 337 0 0 chr12 60011646 60011744 -84270745 + A-rich Low_complexity Low_complexity 1 98 0 2161 135 3 0 chr12 60012155 60012452 -84270037 - AluJo SINE Alu -14 298 1 310 278 31 0 chr12 60012695 60012792 -84269697 + CT-rich Low_complexity Low_complexity 2 101 0 2049 125 0 0 chr12 60014115 60014402 -84268087 - AluY SINE Alu -24 287 1 2362 79 24 0 chr12 60014530 60014822 -84267667 + AluSp SINE Alu 1 299 -14 2405 87 3 0 chr12 60014823 60015121 -84267368 + AluY SINE Alu 1 299 -12 2312 84 3 0 chr12 60015286 60015600 -84266889 - AluSp SINE Alu 0 315 1 2322 103 0 19 chr12 60015600 60015909 -84266580 - AluSc SINE Alu -5 304 1 864 198 0 48 chr12 60015911 60016078 -84266411 - FRAM SINE Alu -18 158 1 2306 100 3 0 chr12 60019363 60019653 -84262836 - AluSx SINE Alu -21 291 1 564 125 12 0 chr12 60020163 60020243 -84262246 + FLAM SINE Alu 41 121 -22 2404 84 3 7 chr12 60022622 60022932 -84259557 - AluSc SINE Alu 0 309 1 1942 99 0 0 chr12 60025373 60025615 -84256874 + AluSq SINE Alu 55 296 -17 1759 174 3 52 chr12 60025646 60025793 -84256696 + AluJb SINE Alu 1 154 -158 2367 88 0 3 chr12 60025793 60026090 -84256399 + AluSq SINE Alu 1 296 -17 1759 174 3 52 chr12 60026090 60026269 -84256220 + AluJb SINE Alu 154 311 -1 1272 224 118 0 chr12 60026459 60026722 -84255767 + AluJo SINE Alu 1 294 -18 1168 90 164 25 chr12 60026806 60027007 -84255482 + MER30 DNA MER1_type 2 230 0 1078 176 0 0 chr12 60027084 60027249 -84255240 + AluSg/x SINE Alu 132 296 -14 24 0 0 0 chr12 60027268 60027292 -84255197 + AT_rich Low_complexity Low_complexity 1 24 0 1554 57 0 0 chr12 60027926 60028118 -84254371 + AluY SINE Alu 118 309 -2 2022 107 66 0 chr12 60029419 60029708 -84252781 + AluSg SINE Alu 1 308 -2 2299 129 7 2 chr12 60029756 60030465 -84252024 + AluSq SINE Alu 1 308 -5 420 289 48 42 chr12 60033340 60033387 -84249102 - MIR3 SINE MIR 0 208 163 2457 90 0 0 chr12 60033387 60033688 -84248801 + AluSg SINE Alu 1 301 -9 420 289 48 42 chr12 60033688 60033806 -84248683 - MIR3 SINE MIR -45 163 42 1768 145 43 16 chr12 60035945 60036249 -84246240 - AluSx SINE Alu 0 312 1 230 170 0 19 chr12 60037183 60037236 -84245253 + (CGG)n Simple_repeat Simple_repeat 2 53 0 603 131 28 19 chr12 60040227 60040334 -84242155 + FLAM_A SINE Alu 19 126 -16 2181 117 13 0 chr12 60040831 60041131 -84241358 + AluSx SINE Alu 1 304 -8 26 0 0 0 chr12 60041210 60041236 -84241253 + AT_rich Low_complexity Low_complexity 1 26 0 2276 99 7 0 chr12 60041708 60042010 -84240479 + AluSg SINE Alu 2 305 -5 1918 125 14 10 chr12 60042447 60042744 -84239745 - AluY SINE Alu -13 298 1 282 167 0 0 chr12 60042744 60042786 -84239703 - Alu SINE Alu -258 42 1 2097 113 19 10 chr12 60043058 60043367 -84239122 + AluSq SINE Alu 2 313 0 2124 85 3 43 chr12 60043518 60043823 -84238666 - AluY SINE Alu -18 293 1 282 167 0 0 chr12 60043823 60043865 -84238624 - Alu SINE Alu -261 42 1 2062 129 3 7 chr12 60043966 60044268 -84238221 - AluSg SINE Alu -9 301 1 422 172 172 0 chr12 60044302 60044389 -84238100 - FLAM_A SINE Alu -40 102 1 22 80 0 0 chr12 60045254 60045304 -84237185 + AT_rich Low_complexity Low_complexity 1 50 0 1800 108 0 8 chr12 60046298 60046538 -84235951 + AluSx SINE Alu 1 238 -74 1183 59 0 0 chr12 60048773 60048908 -84233581 + AluSq/x SINE Alu 1 135 -178 2483 68 7 0 chr12 60048908 60049216 -84233273 + AluY SINE Alu 1 310 -1 2383 73 0 0 chr12 60049218 60049547 -84232942 + AluSc SINE Alu 1 329 0 1604 186 22 22 chr12 60049555 60049689 -84232800 + AluJb SINE Alu 1 134 -178 282 29 0 0 chr12 60049689 60049724 -84232765 + (CA)n Simple_repeat Simple_repeat 2 36 0 1604 186 22 22 chr12 60049724 60049901 -84232588 + AluJb SINE Alu 133 312 0 730 129 113 16 chr12 60050018 60050142 -84232347 + AluSq/x SINE Alu 2 137 -175 2258 107 23 0 chr12 60050143 60050442 -84232047 + AluSp SINE Alu 3 308 -5 764 199 75 58 chr12 60050457 60050683 -84231806 + MIR SINE MIR 33 262 0 1469 184 0 8 chr12 60050971 60051221 -84231268 + AluJb SINE Alu 1 248 -64 941 128 0 21 chr12 60051225 60051366 -84231123 + AluSg/x SINE Alu 169 306 -6 2111 127 17 0 chr12 60051571 60051863 -84230626 - AluSg SINE Alu -13 297 1 1700 107 0 5 chr12 60052171 60052395 -84230094 + AluSg/x SINE Alu 82 304 -8 573 186 88 0 chr12 60052473 60052586 -84229903 + MER8 DNA MER2_type 117 239 0 364 72 46 0 chr12 60053208 60053276 -84229213 - Alu SINE Alu -14 286 236 276 184 22 21 chr12 60053435 60053616 -84228873 + AluJb SINE Alu 8 263 -39 2080 126 3 7 chr12 60053623 60053916 -84228573 - AluSx SINE Alu -20 292 1 972 181 97 71 chr12 60053944 60054080 -84228409 - AluJb SINE Alu -68 244 98 1420 128 198 0 chr12 60054080 60054337 -84228152 + AluSq SINE Alu 1 308 -5 972 181 97 71 chr12 60054337 60054438 -84228051 - AluJb SINE Alu -214 98 1 242 283 150 9 chr12 60054612 60054725 -84227764 + L2 LINE L2 3122 3250 -22 1952 92 4 33 chr12 60056759 60057032 -84225457 - AluSg SINE Alu -10 300 36 1728 128 77 0 chr12 60057122 60057395 -84225094 - AluSx SINE Alu -18 294 1 1971 139 7 3 chr12 60058107 60058401 -84224088 - AluSx SINE Alu -17 295 1 2154 133 0 0 chr12 60058401 60058694 -84223795 - AluSx SINE Alu -19 293 1 1584 152 23 107 chr12 60058926 60059300 -84223189 + L1MB1 LINE L1 5779 6113 -55 2272 114 0 0 chr12 60059300 60059598 -84222891 + AluSq SINE Alu 1 298 -15 1584 152 23 107 chr12 60059598 60059648 -84222841 + L1MB1 LINE L1 6113 6166 -2 218 167 0 76 chr12 60059856 60059922 -84222567 + A-rich Low_complexity Low_complexity 2 62 0 702 155 0 0 chr12 60059932 60060035 -84222454 + AluJb SINE Alu 2 104 -208 1584 131 0 137 chr12 60060482 60060832 -84221657 - AluJb SINE Alu -10 302 1 1793 70 5 0 chr12 60060843 60061057 -84221432 - AluSq SINE Alu -98 215 1 1834 124 21 10 chr12 60061092 60061383 -84221106 - AluSc SINE Alu -15 294 1 22 0 0 0 chr12 60061441 60061463 -84221026 + AT_rich Low_complexity Low_complexity 1 22 0 1377 220 29 22 chr12 60061908 60062221 -84220268 - 7SLRNA srpRNA srpRNA -5 315 1 1016 197 46 60 chr12 60062303 60062587 -84219902 + AluJo SINE Alu 11 290 -22 1781 173 3 3 chr12 60062602 60062886 -84219603 + AluJb SINE Alu 12 295 -17 22 0 0 0 chr12 60063500 60063522 -84218967 + AT_rich Low_complexity Low_complexity 1 22 0 1849 119 75 10 chr12 60063696 60063990 -84218499 + AluSp SINE Alu 1 313 0 878 135 0 15 chr12 60064822 60064955 -84217534 + AluSq/x SINE Alu 1 131 -182 234 0 0 0 chr12 60064960 60064986 -84217503 + (A)n Simple_repeat Simple_repeat 1 26 0 2017 97 11 0 chr12 60064986 60065254 -84217235 + AluSq SINE Alu 1 271 -42 1368 132 19 9 chr12 60065355 60065567 -84216922 - AluSg/x SINE Alu -15 295 82 658 57 0 0 chr12 60065567 60065655 -84216834 - MER41A LTR ERV1 -301 253 166 2073 134 0 0 chr12 60065655 60065947 -84216542 - AluSx SINE Alu -7 305 14 735 49 246 16 chr12 60065996 60066032 -84216457 - MER41-int LTR ERV1 -1 5945 5919 2245 98 0 7 chr12 60066032 60066327 -84216162 - AluSg SINE Alu -17 293 1 2200 125 3 0 chr12 60066327 60066631 -84215858 - AluSx SINE Alu -7 305 1 735 49 246 16 chr12 60066631 60066715 -84215774 - MER41-int LTR ERV1 -26 5920 5796 1498 133 5 0 chr12 60066815 60067060 -84215429 + AluSg/x SINE Alu 73 318 0 535 172 38 57 chr12 60067060 60067083 -84215406 + MER4D LTR ERV1 189 211 -661 1957 125 36 0 chr12 60067083 60067363 -84215126 + AluSg SINE Alu 1 290 -20 535 172 38 57 chr12 60067363 60067496 -84214993 + MER4D LTR ERV1 211 342 -530 676 182 16 0 chr12 60067497 60067618 -84214871 + FLAM_C SINE Alu 5 127 -6 22 0 0 0 chr12 60067618 60067640 -84214849 + AT_rich Low_complexity Low_complexity 1 22 0 2304 70 13 48 chr12 60067640 60067955 -84214534 + AluY SINE Alu 1 304 -7 1121 88 40 0 chr12 60067955 60068103 -84214386 + AluSx SINE Alu 1 154 -158 674 220 69 159 chr12 60068309 60068720 -84213769 + L2 LINE L2 2327 2773 -541 2044 122 15 4 chr12 60068720 60069001 -84213488 + AluJb SINE Alu 1 283 -29 187 43 0 0 chr12 60069001 60069024 -84213465 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 674 220 69 159 chr12 60069024 60069069 -84213420 + L2 LINE L2 2773 2740 -574 1776 155 31 7 chr12 60069069 60069360 -84213129 + AluSx SINE Alu 1 298 -14 674 220 69 159 chr12 60069360 60069404 -84213085 + L2 LINE L2 2739 2785 -529 909 112 0 8 chr12 60069888 60070013 -84212476 - AluSq/x SINE Alu -188 125 2 646 98 14 126 chr12 60070021 60070041 -84212448 - FLAM_C SINE Alu -175 127 106 1863 122 0 45 chr12 60070041 60070329 -84212160 - AluSx SINE Alu -11 301 27 646 98 14 126 chr12 60070329 60070451 -84212038 - FLAM_C SINE Alu -196 106 1 1856 129 63 6 chr12 60070451 60070801 -84211688 - L1M3 LINE L1 -376 5807 5438 980 153 13 31 chr12 60070801 60070819 -84211670 - AluSp SINE Alu 0 313 296 2373 101 3 0 chr12 60070819 60071125 -84211364 - AluSp SINE Alu -6 307 1 980 153 13 31 chr12 60071125 60071335 -84211154 - AluSp SINE Alu -17 296 89 305 161 0 0 chr12 60071506 60071562 -84210927 - MER94 DNA DNA -78 56 1 2029 147 23 7 chr12 60071594 60071901 -84210588 - AluJo SINE Alu 0 312 1 613 86 9 29 chr12 60072761 60072866 -84209623 - L1MB3 LINE L1 -2 6181 6079 923 127 0 0 chr12 60072938 60073056 -84209433 + AluSq/x SINE Alu 1 118 -195 801 130 0 0 chr12 60073160 60073268 -84209221 - AluSq/x SINE Alu -204 108 1 277 222 317 13 chr12 60073283 60073513 -84208976 - L1ME4a LINE L1 -14 6107 5808 307 0 47 0 chr12 60073933 60073976 -84208513 + (CA)n Simple_repeat Simple_repeat 2 46 0 226 204 0 0 chr12 60074541 60074585 -84207904 - L2 LINE L2 -6 3307 3264 244 171 0 0 chr12 60075102 60075143 -84207346 - Alu SINE Alu -59 241 201 2232 124 0 0 chr12 60075262 60075560 -84206929 - AluSg SINE Alu 0 310 13 2361 80 6 26 chr12 60075564 60075737 -84206752 - AluSp SINE Alu -7 306 140 2487 85 0 0 chr12 60075737 60076044 -84206445 - AluY SINE Alu -1 310 4 2361 80 6 26 chr12 60076044 60076182 -84206307 - AluSp SINE Alu -173 140 1 1499 150 129 18 chr12 60076182 60076508 -84205981 - MLT1B LTR MaLR -10 380 19 1263 172 12 112 chr12 60076608 60076778 -84205711 - AluSx SINE Alu 0 302 179 2404 80 13 0 chr12 60076778 60077080 -84205409 - AluSx SINE Alu -6 306 1 1263 172 12 112 chr12 60077080 60077240 -84205249 - AluSx SINE Alu -123 179 5 1995 128 37 24 chr12 60077682 60077980 -84204509 - AluSq SINE Alu -11 302 1 3924 141 11 6 chr12 60078000 60078632 -84203857 - MER41B LTR ERV1 0 635 1 2213 130 0 0 chr12 60078683 60078991 -84203498 - AluSx SINE Alu -4 308 1 1386 149 28 99 chr12 60078991 60079313 -84203176 - AluJb SINE Alu -11 301 3 2613 55 0 0 chr12 60079330 60079637 -84202852 - AluY SINE Alu -4 307 1 2089 125 7 3 chr12 60079637 60079941 -84202548 - AluSq SINE Alu -8 305 1 2052 105 10 48 chr12 60080222 60080535 -84201954 - AluSq SINE Alu -12 301 1 1405 102 6 0 chr12 60080822 60080999 -84201490 - AluSp SINE Alu -135 178 1 929 172 91 25 chr12 60081001 60081286 -84201203 - L1M4 LINE L1 -751 5395 5092 1168 169 53 0 chr12 60081301 60081490 -84200999 - AluSg/x SINE Alu -45 265 67 1951 153 13 0 chr12 60081597 60081897 -84200592 + AluSx SINE Alu 1 304 -8 1378 195 22 87 chr12 60082321 60082644 -84199845 - AluJb SINE Alu 0 302 1 2013 109 0 68 chr12 60082648 60082816 -84199673 - AluY SINE Alu -12 299 162 2494 67 7 0 chr12 60082816 60083116 -84199373 - AluSg SINE Alu -2 308 7 2013 109 0 68 chr12 60083116 60083268 -84199221 - AluY SINE Alu -149 162 1 2569 72 7 0 chr12 60083978 60084284 -84198205 + AluSx SINE Alu 1 308 -4 2189 86 0 0 chr12 60084303 60084571 -84197918 + AluSg SINE Alu 23 290 -20 2331 96 3 6 chr12 60084631 60084943 -84197546 + AluY SINE Alu 1 311 0 1930 154 7 17 chr12 60084958 60085091 -84197398 + AluSx SINE Alu 2 135 -177 1987 152 0 10 chr12 60085091 60085393 -84197096 + AluSg SINE Alu 1 299 -11 1930 154 7 17 chr12 60085393 60085558 -84196931 + AluSx SINE Alu 135 297 -15 1589 198 34 19 chr12 60085595 60085802 -84196687 + MER1B DNA MER1_type 11 226 -2486 2055 105 13 45 chr12 60085802 60085968 -84196521 - AluSx SINE Alu -9 303 150 2207 94 7 3 chr12 60085968 60086266 -84196223 - AluY SINE Alu -12 299 1 2055 105 13 45 chr12 60086266 60086412 -84196077 - AluSx SINE Alu -162 150 1 1589 198 34 19 chr12 60086412 60086528 -84195961 + MER1B DNA MER1_type 226 339 0 873 155 14 0 chr12 60086600 60086742 -84195747 + AluJo SINE Alu 5 148 -164 241 167 0 0 chr12 60086751 60086787 -84195702 - Alu SINE Alu -266 36 1 272 160 20 0 chr12 60086843 60086893 -84195596 + L2 LINE L2 3263 3313 0 21 36 0 0 chr12 60087136 60087164 -84195325 + AT_rich Low_complexity Low_complexity 1 28 0 198 103 0 0 chr12 60087459 60087488 -84195001 + (CATA)n Simple_repeat Simple_repeat 2 30 0 185 133 0 67 chr12 60087488 60087502 -84194987 + L2 LINE L2 3272 3285 -28 1753 159 21 17 chr12 60087502 60087791 -84194698 - AluJb SINE Alu -22 290 1 185 133 0 67 chr12 60087791 60087821 -84194668 + L2 LINE L2 3285 3313 0 374 250 0 0 chr12 60087995 60088083 -84194406 + AluSg/x SINE Alu 213 300 0 2004 140 0 3 chr12 60088432 60088760 -84193729 - AluJb SINE Alu 0 354 28 405 0 0 0 chr12 60089090 60089135 -84193354 + (CA)n Simple_repeat Simple_repeat 2 46 0 2120 108 45 0 chr12 60089457 60089744 -84192745 - AluSx SINE Alu -12 300 1 1757 150 36 4 chr12 60089758 60089914 -84192575 - AluJb SINE Alu -29 283 113 260 27 27 0 chr12 60089914 60089951 -84192538 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1757 150 36 4 chr12 60089951 60090068 -84192421 - AluJb SINE Alu -199 113 1 333 0 0 0 chr12 60090262 60090299 -84192190 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr12 60090299 60090320 -84192169 + AT_rich Low_complexity Low_complexity 1 21 0 4129 152 28 13 chr12 60090320 60091004 -84191485 - L1MB7 LINE L1 0 6184 5487 2424 110 0 0 chr12 60091004 60091314 -84191175 - AluSx SINE Alu -2 310 1 4129 152 28 13 chr12 60091314 60091374 -84191115 - L1MB7 LINE L1 -697 5487 5429 227 33 0 0 chr12 60091474 60091504 -84190985 - AluY SINE Alu -272 30 1 348 130 14 14 chr12 60091602 60091671 -84190818 + AluSp/q SINE Alu 231 299 -4 1590 195 29 23 chr12 60091689 60091996 -84190493 + AluJb SINE Alu 1 309 -3 1821 155 16 13 chr12 60092079 60092383 -84190106 + AluSq SINE Alu 1 305 -8 1832 167 19 16 chr12 60092386 60092697 -84189792 + AluSx SINE Alu 1 312 0 2112 123 0 30 chr12 60092786 60093087 -84189402 + AluSx SINE Alu 1 292 -20 1809 162 20 10 chr12 60093329 60093631 -84188858 - AluSx SINE Alu -7 305 1 1490 212 7 7 chr12 60093638 60093926 -84188563 - AluJo SINE Alu -24 288 1 2177 122 3 0 chr12 60094284 60094588 -84187901 + AluSx SINE Alu 1 305 -7 1434 270 57 47 chr12 60094830 60095407 -84187082 + MER119 DNA MER1_type 1 583 0 1981 132 3 45 chr12 60095496 60095807 -84186682 - AluSx SINE Alu -14 298 1 1936 119 56 7 chr12 60095814 60096100 -84186389 - AluSx SINE Alu -6 306 7 1602 145 26 43 chr12 60096513 60096816 -84185673 - AluSp SINE Alu -15 298 1 2063 123 3 10 chr12 60096821 60097123 -84185366 - AluSq SINE Alu -13 300 1 6309 63 24 12 chr12 60097332 60098359 -84184130 - SVA Other Other -520 866 1 382 279 167 46 chr12 60098367 60098566 -84183923 - HAL1 LINE L1 -615 1892 1718 2470 60 0 3 chr12 60098566 60098864 -84183625 + AluY SINE Alu 1 297 -14 382 279 167 46 chr12 60098864 60098892 -84183597 - HAL1 LINE L1 -789 1718 1695 2264 109 7 0 chr12 60098892 60099195 -84183294 + AluSx SINE Alu 1 305 -7 382 279 167 46 chr12 60099195 60099289 -84183200 - HAL1 LINE L1 -812 1695 1531 299 254 0 0 chr12 60099293 60099360 -84183129 + MER94 DNA DNA 67 133 -1 2402 225 64 13 chr12 60099363 60100025 -84182464 - L1MC4 LINE L1 -279 7763 7057 1894 112 0 12 chr12 60100025 60100283 -84182206 + AluSx SINE Alu 1 255 -57 2402 225 64 13 chr12 60100283 60100367 -84182122 - L1MC4 LINE L1 -985 7057 6979 301 247 0 26 chr12 60100389 60100466 -84182023 + L1ME LINE L1 4372 4446 -1700 4402 128 15 126 chr12 60100466 60102028 -84180461 - pTR5 LTR ERV1 0 2606 1524 792 292 85 35 chr12 60102028 60102043 -84180446 + L1ME LINE L1 4456 4469 -1677 2148 125 27 0 chr12 60102043 60102340 -84180149 + AluSx SINE Alu 1 305 -7 792 292 85 35 chr12 60102340 60102687 -84179802 + L1ME LINE L1 4469 4797 -1349 2178 141 3 0 chr12 60102687 60102993 -84179496 + AluSx SINE Alu 1 307 -5 792 292 85 35 chr12 60102993 60103369 -84179120 + L1ME LINE L1 4797 5232 -914 2295 102 0 13 chr12 60103412 60103725 -84178764 + AluY SINE Alu 1 309 -2 2056 143 3 0 chr12 60103736 60104030 -84178459 + AluSq SINE Alu 1 295 -18 6762 71 16 4 chr12 60104030 60105514 -84176975 + L1PA8 LINE L1 4708 6172 0 853 276 93 12 chr12 60105587 60106018 -84176471 + L1ME LINE L1 5329 5794 -370 2123 130 7 0 chr12 60106220 60106512 -84175977 + AluSx SINE Alu 1 294 -18 1527 102 0 0 chr12 60106681 60106877 -84175612 - AluSq SINE Alu -117 196 1 1363 169 34 23 chr12 60107033 60107299 -84175190 + AluJo SINE Alu 27 295 -17 693 158 79 31 chr12 60107336 60107463 -84175026 + FLAM_C SINE Alu 1 133 0 1738 139 95 4 chr12 60107467 60107740 -84174749 + AluSx SINE Alu 1 298 -14 1981 127 0 17 chr12 60107806 60107933 -84174556 + AluSg1 SINE Alu 9 137 -172 2298 87 40 0 chr12 60107933 60108232 -84174257 + AluSp SINE Alu 1 311 -2 1981 127 0 17 chr12 60108232 60108403 -84174086 + AluSg1 SINE Alu 137 302 -7 2625 42 7 3 chr12 60108408 60108718 -84173771 + AluY SINE Alu 1 311 0 955 92 127 7 chr12 60109701 60109843 -84172646 + AluJb SINE Alu 133 291 -21 2579 58 7 0 chr12 60110121 60110429 -84172060 - AluY SINE Alu 0 311 2 2368 96 3 0 chr12 60110501 60110804 -84171685 - AluSg SINE Alu -6 304 1 2272 83 3 13 chr12 60111105 60111407 -84171082 - AluSp SINE Alu -14 299 1 225 0 0 0 chr12 60111736 60111761 -84170728 + (A)n Simple_repeat Simple_repeat 1 25 0 1620 132 70 28 chr12 60114025 60114312 -84168177 + AluSx SINE Alu 1 299 -13 2373 72 0 10 chr12 60114319 60114623 -84167866 + AluSc SINE Alu 1 301 -8 943 117 0 8 chr12 60114635 60114763 -84167726 + AluSq/x SINE Alu 6 132 -181 2035 133 26 0 chr12 60114768 60115070 -84167419 + AluSg SINE Alu 1 310 0 913 349 12 118 chr12 60115120 60115458 -84167031 - AluJb SINE Alu 0 302 1 692 61 50 0 chr12 60115466 60115565 -84166924 - L1PA13 LINE L1 0 6163 6060 25 0 0 0 chr12 60115628 60115653 -84166836 + AT_rich Low_complexity Low_complexity 1 25 0 2143 163 62 50 chr12 60115804 60116096 -84166393 - LTR45B LTR ERV1 0 489 187 765 203 0 0 chr12 60116096 60116229 -84166260 - FLAM_C SINE Alu 0 133 1 2143 163 62 50 chr12 60116229 60116401 -84166088 - LTR45B LTR ERV1 -302 187 19 243 236 0 18 chr12 60116611 60116666 -84165823 + L2 LINE L2 3255 3308 -5 34 42 0 0 chr12 60116734 60116782 -84165707 + AT_rich Low_complexity Low_complexity 1 48 0 1890 181 0 23 chr12 60116783 60117093 -84165396 - AluJb SINE Alu -9 303 1 4798 119 1 11 chr12 60117096 60117826 -84164663 - L1PA13 LINE L1 -7 6156 5434 7613 188 34 75 chr12 60117827 60119655 -84162834 - MER52A LTR ERV1 -2 1753 1 1334 106 10 5 chr12 60119655 60119854 -84162635 - MER52A-int LTR ERV1 0 7091 6892 430 38 0 0 chr12 60119852 60119905 -84162584 - MER52A-int LTR ERV1 -1177 6028 5976 * 775 162 0 14 chr12 60119910 60120058 -84162431 - MER52A-int LTR ERV1 -1256 4690 4545 1821 98 0 22 chr12 60120078 60120352 -84162137 - MER52A-int LTR ERV1 -6078 1013 746 9124 129 34 28 chr12 60120369 60121277 -84161212 - MER52A-int LTR ERV1 -3890 3201 2300 2602 84 0 0 chr12 60121277 60121588 -84160901 + AluY SINE Alu 1 311 0 9124 129 34 28 chr12 60121588 60121689 -84160800 - MER52A-int LTR ERV1 -4791 2300 2201 2090 125 24 0 chr12 60121689 60121976 -84160513 + AluSx SINE Alu 1 294 -18 9124 129 34 28 chr12 60121976 60122460 -84160029 - MER52A-int LTR ERV1 -4890 2201 1698 3691 116 19 18 chr12 60122576 60123145 -84159344 - MER52A-int LTR ERV1 -6520 571 2 7469 185 42 88 chr12 60123145 60124947 -84157542 - MER52A LTR ERV1 0 1755 36 4206 121 44 108 chr12 60125065 60125898 -84156591 - LTR1 LTR ERV1 -3 782 3 277 244 83 67 chr12 60126215 60126408 -84156081 + L1ME4a LINE L1 5517 5712 -409 1757 190 0 0 chr12 60126428 60126717 -84155772 + AluJb SINE Alu 1 289 -23 396 59 0 0 chr12 60126720 60126771 -84155718 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 320 244 199 15 chr12 60126797 60127063 -84155426 + L1ME4a LINE L1 5715 6029 -92 200 159 0 45 chr12 60127068 60127112 -84155377 + CT-rich Low_complexity Low_complexity 2 43 0 2111 114 10 3 chr12 60127113 60127410 -84155079 - AluSg SINE Alu -11 299 1 1184 117 0 0 chr12 60127513 60127675 -84154814 + AluSg/x SINE Alu 147 308 -4 302 73 109 18 chr12 60127727 60127782 -84154707 + AluJ/FLAM SINE Alu 2 61 -241 240 296 34 11 chr12 60127862 60127950 -84154539 - MLT1K LTR MaLR -497 91 2 366 372 69 28 chr12 60127969 60128332 -84154157 + L2 LINE L2 634 1011 -2303 485 330 166 18 chr12 60128608 60129108 -84153381 + L2 LINE L2 1477 2050 -1264 2603 57 0 13 chr12 60129193 60129508 -84152981 - AluY SINE Alu 0 311 1 1940 142 3 40 chr12 60129510 60129813 -84152676 - AluSx SINE Alu -20 292 1 611 140 0 0 chr12 60129814 60129907 -84152582 - AluJ/FLAM SINE Alu -218 94 2 458 100 0 0 chr12 60130066 60130126 -84152363 - Alu SINE Alu -23 288 229 875 142 0 0 chr12 60130143 60130270 -84152219 - AluJb SINE Alu -185 127 1 2500 64 0 19 chr12 60130342 60130653 -84151836 - AluY SINE Alu -6 305 1 409 183 46 24 chr12 60131748 60131901 -84150588 + MER20 DNA MER1_type 1 219 0 1888 133 3 17 chr12 60132240 60132534 -84149955 - AluSx SINE Alu -12 300 11 835 109 0 8 chr12 60132582 60132701 -84149788 + L1PB1 LINE L1 6030 6147 -4 2146 113 0 13 chr12 60140747 60141048 -84141441 + AluSg SINE Alu 10 306 -4 638 223 97 40 chr12 60144206 60144506 -84137983 + LTR24B LTR ERV1 252 568 -8 2275 76 34 0 chr12 60144616 60144907 -84137582 - AluSx SINE Alu -11 301 1 2113 97 21 0 chr12 60144909 60145199 -84137290 - AluSp SINE Alu -16 297 2 1140 89 13 0 chr12 60145397 60145554 -84136935 - AluSx SINE Alu -16 294 136 564 130 0 0 chr12 60145554 60145631 -84136858 - AluSx SINE Alu -235 78 2 868 93 17 0 chr12 60145665 60145783 -84136706 - AluSg/x SINE Alu -10 300 181 763 132 0 0 chr12 60145794 60145900 -84136589 - AluJb SINE Alu -204 108 3 405 249 154 18 chr12 60146076 60146245 -84136244 + MIR SINE MIR 2 193 -69 2123 133 3 0 chr12 60146570 60146864 -84135625 - AluJb SINE Alu -7 305 11 708 77 0 0 chr12 60146964 60147055 -84135434 + AluY SINE Alu 216 306 -5 588 139 0 0 chr12 60147052 60147131 -84135358 - AluS SINE Alu -232 80 2 * 2155 98 44 7 chr12 60147405 60147702 -84134787 - AluSx SINE Alu -4 308 1 237 384 96 12 chr12 60148634 60148884 -84133605 + L2 LINE L2 2686 2956 -358 2431 91 0 0 chr12 60149002 60149298 -84133191 - AluSx SINE Alu -16 296 1 2348 100 0 3 chr12 60149303 60149602 -84132887 - AluSq SINE Alu -15 298 1 2341 96 0 34 chr12 60149711 60150034 -84132455 - AluSx SINE Alu 0 312 1 275 211 40 0 chr12 60150477 60150553 -84131936 - Charlie5 DNA MER1_type 0 2623 2545 1541 206 0 31 chr12 60150560 60150852 -84131637 - AluJo SINE Alu -29 283 1 248 53 26 0 chr12 60150916 60150954 -84131535 + (TA)n Simple_repeat Simple_repeat 1 39 0 2351 103 0 3 chr12 60150954 60151254 -84131235 - AluSg SINE Alu -11 299 1 2109 96 29 4 chr12 60151260 60151541 -84130948 - AluSc SINE Alu -21 288 1 1125 198 23 9 chr12 60151548 60151765 -84130724 - AluJb SINE Alu -22 290 71 1472 117 0 0 chr12 60151793 60151989 -84130500 - AluSg/x SINE Alu -11 301 106 2293 112 0 0 chr12 60152184 60152479 -84130010 - AluSx SINE Alu -17 295 1 1474 154 99 4 chr12 60152485 60152738 -84129751 - AluJo SINE Alu -20 292 16 1638 121 15 44 chr12 60152738 60153010 -84129479 + MER1B DNA MER1_type 76 339 0 2323 94 3 0 chr12 60153027 60153324 -84129165 - AluSp SINE Alu -15 298 1 2235 112 7 0 chr12 60153396 60153700 -84128789 - AluSx SINE Alu -6 306 1 2332 101 0 0 chr12 60154224 60154520 -84127969 - AluSc SINE Alu -8 301 6 419 253 40 0 chr12 60154620 60154770 -84127719 - MER103 DNA DNA -8 158 3 1212 221 38 42 chr12 60155216 60155505 -84126984 - AluJo SINE Alu -23 289 2 2399 104 0 0 chr12 60155532 60155840 -84126649 + AluSg1 SINE Alu 1 308 -1 1477 153 97 4 chr12 60156173 60156421 -84126068 + AluJb SINE Alu 1 271 -41 332 263 81 10 chr12 60156531 60156630 -84125859 + MIR3 SINE MIR 85 190 -18 2093 142 0 0 chr12 60157371 60157666 -84124823 + AluSx SINE Alu 1 295 -17 1957 132 44 14 chr12 60157702 60157998 -84124491 + AluSg SINE Alu 1 305 -5 191 254 146 73 chr12 60158620 60158730 -84123759 + MIR SINE MIR 135 252 -10 317 285 60 53 chr12 60158906 60159057 -84123432 - MIR SINE MIR -54 208 57 483 284 39 68 chr12 60159099 60159360 -84123129 + MIR SINE MIR 8 262 0 1982 139 53 24 chr12 60159572 60159627 -84122862 + MER7A DNA MER2_type 1 53 -2985 2152 95 46 7 chr12 60159627 60159910 -84122579 + AluSx SINE Alu 5 298 -14 1982 139 53 24 chr12 60159910 60160191 -84122298 + MER7A DNA MER2_type 53 345 -1 2277 92 0 48 chr12 60160210 60160524 -84121965 + AluSx SINE Alu 1 299 -13 1769 182 4 0 chr12 60160530 60160870 -84121619 + AluJo SINE Alu 1 341 0 28 48 0 0 chr12 60160882 60160924 -84121565 + AT_rich Low_complexity Low_complexity 1 42 0 2132 134 0 0 chr12 60161063 60161355 -84121134 + AluSx SINE Alu 7 298 -14 2213 95 0 0 chr12 60161751 60162025 -84120464 + AluSg SINE Alu 1 274 -36 450 0 0 0 chr12 60162027 60162077 -84120412 + (CA)n Simple_repeat Simple_repeat 1 50 0 2143 134 3 0 chr12 60162864 60163156 -84119333 + AluSx SINE Alu 1 293 -19 1007 243 58 120 chr12 60163178 60163746 -84118743 + HAL1 LINE L1 147 679 -1828 2485 67 0 3 chr12 60163746 60164043 -84118446 + AluSg SINE Alu 1 296 -14 2029 144 7 3 chr12 60164076 60164374 -84118115 + AluSx SINE Alu 3 301 -11 272 287 33 25 chr12 60164374 60164420 -84118069 + HAL1 LINE L1 2381 2425 -82 2011 135 7 3 chr12 60164420 60164708 -84117781 - AluSx SINE Alu -23 289 1 272 287 33 25 chr12 60164708 60164783 -84117706 + HAL1 LINE L1 2425 2503 -4 478 232 24 40 chr12 60165038 60165163 -84117326 + MIR SINE MIR 30 152 -56 319 234 13 13 chr12 60165284 60165361 -84117128 - L2 LINE L2 -1 3312 3236 405 262 74 8 chr12 60165392 60165514 -84116975 - L2 LINE L2 -266 3047 2918 1057 223 130 7 chr12 60165531 60165823 -84116666 - L2 LINE L2 -537 2777 2450 310 202 56 0 chr12 60165835 60165924 -84116565 + L1MB4 LINE L1 6086 6179 -1 1413 93 0 0 chr12 60165980 60166162 -84116327 - AluSg/x SINE Alu -2 310 129 1975 113 0 55 chr12 60166675 60166986 -84115503 - AluSx SINE Alu -18 294 1 234 0 0 0 chr12 60167367 60167393 -84115096 + (T)n Simple_repeat Simple_repeat 1 26 0 2534 35 0 54 chr12 60168078 60168393 -84114096 - AluY SINE Alu -13 298 1 633 131 0 175 chr12 60168536 60168696 -84113793 + AluJb SINE Alu 162 293 -19 2768 154 70 8 chr12 60168746 60169272 -84113217 - MER89 LTR ERV1 0 559 1 2065 166 0 0 chr12 60169469 60169777 -84112712 - AluSx SINE Alu -4 308 1 5429 129 11 35 chr12 60169781 60170082 -84112407 - Tigger1 DNA MER2_type -1540 878 571 1539 186 0 72 chr12 60170082 60170389 -84112100 + AluJb SINE Alu 1 285 -27 1977 140 3 0 chr12 60170394 60170687 -84111802 + AluJo SINE Alu 1 294 -18 5429 129 11 35 chr12 60170687 60171278 -84111211 - Tigger1 DNA MER2_type -1851 567 1 2424 86 0 13 chr12 60171366 60171680 -84110809 - AluY SINE Alu -1 310 1 207 0 0 0 chr12 60171682 60171705 -84110784 + (T)n Simple_repeat Simple_repeat 1 23 0 2251 137 59 111 chr12 60171709 60171909 -84110580 - MER75 DNA T2_type -2 512 303 2066 138 0 0 chr12 60171909 60172213 -84110276 - AluSx SINE Alu -8 304 1 2251 137 59 111 chr12 60172213 60172552 -84109937 - MER75 DNA T2_type -211 303 1 577 141 0 0 chr12 60172574 60172659 -84109830 - FLAM SINE Alu -12 131 47 2253 97 3 16 chr12 60172685 60172994 -84109495 + AluSg SINE Alu 1 305 -5 206 270 79 0 chr12 60173323 60173386 -84109103 - L2 LINE L2 0 3272 3205 1752 148 44 0 chr12 60173471 60173741 -84108748 + AluJb SINE Alu 1 282 -30 3669 125 26 44 chr12 60174184 60174798 -84107691 - LTR26 LTR ERV1 0 603 1 1796 111 108 27 chr12 60174908 60175242 -84107247 + LTR7 LTR ERV1 90 450 0 258 284 55 28 chr12 60175313 60175422 -84107067 + L2 LINE L2 2927 3038 -234 416 143 0 0 chr12 60175919 60175982 -84106507 - AluSq/x SINE Alu -173 140 78 498 242 19 51 chr12 60175991 60176148 -84106341 + MIR SINE MIR 2 153 -109 2422 64 3 16 chr12 60176158 60176472 -84106017 + AluY SINE Alu 2 311 0 383 89 59 10 chr12 60176508 60176609 -84105880 + (TA)n Simple_repeat Simple_repeat 1 106 0 301 205 90 0 chr12 60176620 60176698 -84105791 - L1MC4 LINE L1 -1345 6697 6613 235 208 182 0 chr12 60176737 60176814 -84105675 + L1MC4 LINE L1 6612 6702 -1340 242 202 10 101 chr12 60176817 60176916 -84105573 + L1MC4 LINE L1 6614 6703 -1339 2241 117 3 0 chr12 60178030 60178328 -84104161 - AluSx SINE Alu -13 299 1 379 216 11 0 chr12 60178533 60178621 -84103868 + HAL1 LINE L1 2237 2325 -182 239 273 11 23 chr12 60179036 60179124 -84103365 + GA-rich Low_complexity Low_complexity 1 87 0 186 351 48 5 chr12 60179190 60179378 -84103111 + L2 LINE L2 1720 1915 -1399 251 246 0 0 chr12 60179525 60179582 -84102907 - L2 LINE L2 -5 3267 3211 907 307 69 33 chr12 60179827 60180250 -84102239 + LTR16B LTR ERVL 1 438 -26 453 240 8 48 chr12 60180262 60180375 -84102114 + MIR SINE MIR 143 252 -10 2276 107 3 13 chr12 60180375 60180684 -84101805 - AluSx SINE Alu -6 306 1 453 240 8 48 chr12 60180684 60180695 -84101794 + MIR SINE MIR 252 262 0 1757 129 129 26 chr12 60180710 60181050 -84101439 + THE1C LTR MaLR 1 375 0 449 331 72 24 chr12 60181050 60181301 -84101188 + L2 LINE L2 3005 3267 -5 2327 100 3 10 chr12 60181339 60181650 -84100839 + AluSq SINE Alu 1 309 -4 374 328 39 47 chr12 60182080 60182312 -84100177 + L2 LINE L2 2602 2831 -483 335 333 37 19 chr12 60182561 60182723 -84099766 + L2 LINE L2 3102 3266 -6 1524 181 31 46 chr12 60183148 60183368 -84099121 + MER2 DNA MER2_type 1 216 -129 3610 128 10 0 chr12 60183368 60183890 -84098599 - MER1A DNA MER1_type 0 527 1 1524 181 31 46 chr12 60183890 60183994 -84098495 + MER2 DNA MER2_type 216 320 -25 969 169 0 45 chr12 60184188 60184365 -84098124 - AluJo SINE Alu -57 255 87 3049 106 76 90 chr12 60184471 60184861 -84097628 - L1MC2 LINE L1 -3 6341 5947 2122 131 0 0 chr12 60184861 60185151 -84097338 - AluSq SINE Alu -23 290 1 3049 106 76 90 chr12 60185151 60185230 -84097259 - L1MC2 LINE L1 -397 5947 5868 1794 154 13 17 chr12 60185230 60185529 -84096960 - AluJb SINE Alu -11 301 4 3049 106 76 90 chr12 60185529 60185575 -84096914 - L1MC2 LINE L1 -476 5868 5823 891 209 0 6 chr12 60185575 60185738 -84096751 - FRAM SINE Alu 0 166 5 3049 106 76 90 chr12 60185738 60185862 -84096627 - L1MC2 LINE L1 -521 5823 5709 587 205 18 9 chr12 60186027 60186139 -84096350 + FAM SINE Alu 1 113 -72 955 161 0 0 chr12 60186139 60186288 -84096201 - AluJb SINE Alu -129 183 35 2310 92 7 0 chr12 60186292 60186596 -84095893 - AluSp SINE Alu -7 306 1 680 120 0 37 chr12 60186701 60186809 -84095680 + FLAM_C SINE Alu 29 132 -11 378 253 68 34 chr12 60186897 60187043 -84095446 + L2 LINE L2 3159 3309 -4 2260 88 37 0 chr12 60187215 60187510 -84094979 - AluSx SINE Alu -6 306 1 2345 82 0 3 chr12 60187602 60187908 -84094581 - AluY SINE Alu -6 305 1 358 238 99 51 chr12 60187917 60188072 -84094417 - L1MEd LINE L1 -3994 2316 2141 1578 188 20 24 chr12 60188072 60188370 -84094119 - AluJo SINE Alu -15 297 1 358 238 99 51 chr12 60188370 60188487 -84094002 - L1MEd LINE L1 -4169 2141 2031 28 0 0 0 chr12 60188843 60188871 -84093618 + AT_rich Low_complexity Low_complexity 1 28 0 749 220 82 66 chr12 60188877 60189165 -84093324 - L1MEd LINE L1 -4756 1554 1272 4464 90 0 20 chr12 60189165 60189511 -84092978 + LTR10C LTR ERV1 1 331 -260 2218 45 73 10 chr12 60189511 60189799 -84092690 + AluY SINE Alu 1 306 -5 4464 90 0 20 chr12 60189799 60190055 -84092434 + LTR10C LTR ERV1 331 591 0 749 220 82 66 chr12 60190055 60190382 -84092107 - L1MEd LINE L1 -5038 1272 896 22 0 0 0 chr12 60190431 60190453 -84092036 + AT_rich Low_complexity Low_complexity 1 22 0 2352 83 0 3 chr12 60190456 60190745 -84091744 + AluSc SINE Alu 1 288 -21 206 304 52 17 chr12 60191187 60191302 -84091187 - MIR SINE MIR -10 252 134 1002 184 0 18 chr12 60191427 60191595 -84090894 - AluJb SINE Alu -14 298 134 6475 65 27 52 chr12 60191595 60192573 -84089916 - SVA Other Other -1 1385 433 5906 37 5 160 chr12 60192641 60193665 -84088824 - SVA Other Other -520 866 2 2178 94 80 14 chr12 60193988 60194340 -84088149 - THE1C LTR MaLR 0 375 1 972 101 48 12 chr12 60194932 60195100 -84087389 + L1MB8 LINE L1 6005 6178 0 372 228 0 0 chr12 60195100 60195179 -84087310 - Charlie5 DNA MER1_type -296 2316 2238 1910 106 0 0 chr12 60195185 60195430 -84087059 - AluSx SINE Alu -13 299 55 972 243 116 34 chr12 60196199 60196665 -84085824 - HAL1 LINE L1 0 2507 2004 6510 37 9 35 chr12 60196803 60197613 -84084876 - SVA Other Other -2 1384 596 2007 81 0 0 chr12 60197731 60197979 -84084510 - AluSq SINE Alu -65 248 1 474 238 50 39 chr12 60198003 60198184 -84084305 + L1ME3A LINE L1 5773 5955 -215 206 167 0 21 chr12 60198203 60198251 -84084238 + (TA)n Simple_repeat Simple_repeat 1 47 0 1434 157 112 24 chr12 60198905 60199192 -84083297 - AluJo SINE Alu 0 312 1 1864 142 0 46 chr12 60199650 60199973 -84082516 - AluJo SINE Alu -4 308 1 547 86 0 32 chr12 60199975 60200026 -84082463 + (TTTTC)n Simple_repeat Simple_repeat 1 49 -41 3558 193 23 81 chr12 60200026 60201054 -84081435 + LTR5 LTR ERVK 1 969 0 547 86 0 32 chr12 60201054 60201095 -84081394 + (TTTTC)n Simple_repeat Simple_repeat 49 90 0 2448 87 7 0 chr12 60201095 60201404 -84081085 - AluSx SINE Alu -1 311 1 2456 203 36 4 chr12 60202109 60202587 -84079902 + LTR42 LTR ERVL 3 495 0 1526 175 52 18 chr12 60202640 60202949 -84079540 - AluJo SINE Alu 0 319 1 3229 187 13 94 chr12 60203236 60203357 -84079132 - L1 LINE L1 -978 5168 5039 2080 138 0 0 chr12 60203357 60203653 -84078836 - AluJo SINE Alu -16 296 1 3229 187 13 94 chr12 60203653 60204219 -84078270 - L1 LINE L1 -1107 5039 4429 2162 121 3 3 chr12 60204219 60204516 -84077973 - AluSx SINE Alu -15 297 1 3229 187 13 94 chr12 60204516 60204538 -84077951 - L1 LINE L1 -1717 4429 4407 1273 124 5 5 chr12 60204538 60204724 -84077765 - AluJo SINE Alu -7 305 120 3229 187 13 94 chr12 60204724 60204950 -84077539 - L1 LINE L1 -1739 4407 4255 249 33 0 0 chr12 60204950 60204980 -84077509 + (TG)n Simple_repeat Simple_repeat 2 31 0 3229 187 13 94 chr12 60204980 60205135 -84077354 - L1 LINE L1 -1891 4255 4089 1003 235 159 52 chr12 60205135 60205649 -84076840 - L2 LINE L2 -1516 1798 1230 801 128 26 0 chr12 60205671 60205788 -84076701 - AluJo SINE Alu -192 120 1 752 284 107 15 chr12 60205812 60206150 -84076339 - L2 LINE L2 -2110 1204 836 5485 160 13 13 chr12 60206465 60206654 -84075835 + L1P LINE L1 4304 4492 -1654 2159 131 0 3 chr12 60206654 60206952 -84075537 + AluSq SINE Alu 1 297 -16 5485 160 13 13 chr12 60206952 60207791 -84074698 + L1P LINE L1 4491 5332 -814 792 157 75 7 chr12 60207792 60207939 -84074550 + AluJo SINE Alu 2 158 -154 796 132 35 11 chr12 60207962 60208136 -84074353 + CT-rich Low_complexity Low_complexity 3 180 0 319 159 0 0 chr12 60208163 60208207 -84074282 - Alu SINE Alu -255 44 1 4104 130 65 16 chr12 60208613 60209288 -84073201 - MER50 LTR ERV1 -23 711 4 2502 75 0 3 chr12 60209288 60209606 -84072883 - MER50-int LTR ERV1 -8 7197 6881 * 18844 150 23 32 chr12 60209603 60210651 -84071838 - MER50-int LTR ERV1 -1177 6028 4972 1993 140 4 0 chr12 60210651 60210929 -84071560 + AluSx SINE Alu 1 279 -33 360 0 0 0 chr12 60210929 60210969 -84071520 + (CA)n Simple_repeat Simple_repeat 1 40 0 18844 150 23 32 chr12 60210969 60212493 -84069996 - MER50-int LTR ERV1 -2232 4973 3489 1483 102 70 0 chr12 60212493 60212708 -84069781 + MER30 DNA MER1_type 1 230 0 18844 150 23 32 chr12 60212708 60213402 -84069087 - MER50-int LTR ERV1 -3716 3489 2790 7071 125 24 19 chr12 60213405 60215159 -84067330 - MER50-int LTR ERV1 -5362 1843 1 4033 154 44 10 chr12 60215200 60215888 -84066601 - MER50 LTR ERV1 -23 711 1 782 161 15 0 chr12 60217154 60217291 -84065198 + LTR65 LTR ERV1 97 235 -434 716 203 0 0 chr12 60217292 60217415 -84065074 + FLAM_C SINE Alu 2 124 -19 1752 160 170 0 chr12 60217415 60217791 -84064698 + LTR65 LTR ERV1 222 661 -8 1047 197 18 29 chr12 60219241 60219515 -84062974 + L1M4 LINE L1 2771 3041 -3105 6199 95 36 9 chr12 60219516 60220488 -84062001 - L1PA13 LINE L1 0 6163 5175 1155 151 0 6 chr12 60220512 60220691 -84061798 - AluSg/x SINE Alu -1 309 132 2238 120 0 3 chr12 60220691 60220992 -84061497 - AluSx SINE Alu -12 300 1 2406 141 9 69 chr12 60220995 60221319 -84061170 - L1MCa LINE L1 -3950 2476 2277 2396 81 0 3 chr12 60221319 60221616 -84060873 - AluY SINE Alu -15 296 1 2406 141 9 69 chr12 60221616 60221864 -84060625 - L1MCa LINE L1 -4149 2277 2016 778 194 26 7 chr12 60221878 60222033 -84060456 + MER2 DNA MER2_type 1 158 -187 1686 192 11 3 chr12 60222102 60222388 -84060101 - AluJo SINE Alu -24 288 1 343 209 0 0 chr12 60222392 60222459 -84060030 + MER2 DNA MER2_type 268 334 -11 604 113 129 0 chr12 60222486 60222610 -84059879 - L1MCa LINE L1 -4412 2014 1875 180 0 0 0 chr12 60222616 60222636 -84059853 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 7166 52 5 0 chr12 60222791 60224392 -84058097 + L1PA6 LINE L1 4532 6143 -11 1100 137 75 44 chr12 60224796 60225022 -84057467 - THE1C LTR MaLR 0 375 143 1789 173 3 10 chr12 60275226 60275521 -84006968 + AluJb SINE Alu 8 300 -12 1076 163 67 0 chr12 60275528 60275737 -84006752 + Tigger1 DNA MER2_type 888 1110 -1308 * 2374 142 56 14 chr12 60275736 60276181 -84006308 + Tigger1 DNA MER2_type 1945 2408 -10 220 268 18 0 chr12 60276729 60276785 -84005704 + MIR3 SINE MIR 108 164 -44 2164 122 7 0 chr12 60276788 60277092 -84005397 + AluSx SINE Alu 1 306 -6 1850 129 52 0 chr12 60277094 60277366 -84005123 + AluSg SINE Alu 1 286 -24 501 213 45 7 chr12 60277383 60277538 -84004951 + L1M1 LINE L1 3331 3491 -4074 6384 154 12 18 chr12 60277709 60278809 -84003680 + MER52-int LTR ERV1 1698 2790 -4301 200 108 0 27 chr12 60278935 60278972 -84003517 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 350 278 225 26 chr12 60279049 60279240 -84003249 + L1ME4a LINE L1 5875 6103 -18 2147 86 7 4 chr12 60279240 60279519 -84002970 + AluSg SINE Alu 1 280 -30 28 0 0 0 chr12 60280075 60280103 -84002386 + GC_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr12 60280187 60280214 -84002275 + GC_rich Low_complexity Low_complexity 1 27 0 192 268 61 37 chr12 60282255 60282337 -84000152 - MIR3 SINE MIR -52 156 73 341 241 17 43 chr12 60283775 60283891 -83998598 + L1ME LINE L1 5558 5670 -500 516 286 98 50 chr12 60283892 60284189 -83998300 - L2 LINE L2 0 3313 3003 21 36 0 0 chr12 60284902 60284930 -83997559 + GC_rich Low_complexity Low_complexity 1 28 0 398 290 57 16 chr12 60285282 60285406 -83997083 + L2 LINE L2 3142 3270 -2 653 235 0 15 chr12 60285480 60285616 -83996873 - MLT1A1 LTR MaLR 0 365 232 2382 163 0 64 chr12 60285618 60286182 -83996307 - MER4B LTR ERV1 0 610 83 464 128 17 17 chr12 60286893 60287010 -83995479 + (CA)n Simple_repeat Simple_repeat 2 118 0 218 228 201 54 chr12 60287360 60287509 -83994980 + MIR SINE MIR 1 171 -91 304 247 136 65 chr12 60288425 60288579 -83993910 - MIR SINE MIR -7 255 91 378 352 117 29 chr12 60288605 60289051 -83993438 - L2 LINE L2 -1 3312 2828 342 118 20 0 chr12 60289267 60289318 -83993171 + MER5B DNA MER1_type 12 63 -115 988 152 0 61 chr12 60289319 60289483 -83993006 + AluJb SINE Alu 144 297 -15 591 234 78 0 chr12 60289488 60289642 -83992847 + L1ME2 LINE L1 4704 4869 -1277 1027 184 0 0 chr12 60289893 60290051 -83992438 - FRAM SINE Alu -19 157 1 463 257 43 14 chr12 60290206 60290370 -83992119 - L1M3c LINE L1 -5748 383 2 2468 218 40 46 chr12 60290375 60290536 -83991953 + L1ME2 LINE L1 4846 5006 -1158 2157 105 0 20 chr12 60290536 60290674 -83991815 + AluSx SINE Alu 1 140 -172 2171 111 16 25 chr12 60290674 60290989 -83991500 + AluSx SINE Alu 1 312 0 2157 105 0 20 chr12 60290989 60291146 -83991343 + AluSx SINE Alu 140 290 -22 2468 218 40 46 chr12 60291146 60291331 -83991158 + L1ME2 LINE L1 5006 5191 -973 1715 151 15 4 chr12 60291331 60291596 -83990893 + AluJo SINE Alu 25 292 -20 2468 218 40 46 chr12 60291596 60291752 -83990737 + L1ME2 LINE L1 5191 5346 -818 1891 177 20 0 chr12 60291752 60291878 -83990611 + AluJo SINE Alu 1 123 -189 2312 104 7 10 chr12 60291878 60292186 -83990303 + AluSq SINE Alu 3 309 -4 1891 177 20 0 chr12 60292186 60292364 -83990125 + AluJo SINE Alu 123 311 -1 2468 218 40 46 chr12 60292364 60292403 -83990086 + L1ME2 LINE L1 5346 5384 -780 2560 72 0 0 chr12 60292403 60292708 -83989781 + AluY SINE Alu 2 306 -5 2468 218 40 46 chr12 60292708 60293199 -83989290 + L1ME2 LINE L1 5384 5923 -241 482 322 89 34 chr12 60293372 60293754 -83988735 - L2 LINE L2 -1179 2135 1733 267 217 14 14 chr12 60294251 60294320 -83988169 - MLT1L LTR MaLR -1 614 546 381 239 361 5 chr12 60294472 60294677 -83987812 - MLT1L LTR MaLR -337 278 1 541 246 97 0 chr12 60294735 60294869 -83987620 + MIR SINE MIR 4 150 -112 742 218 167 0 chr12 60294869 60295043 -83987446 + MER3 DNA MER1_type 1 203 -6 621 333 107 29 chr12 60295148 60295195 -83987294 + L2 LINE L2 574 616 -2698 2105 138 3 6 chr12 60295195 60295507 -83986982 - AluJb SINE Alu -1 311 1 621 333 107 29 chr12 60295507 60295936 -83986553 + L2 LINE L2 616 1087 -2227 295 313 61 8 chr12 60295945 60296076 -83986413 + L2 LINE L2 2621 2758 -556 195 359 39 31 chr12 60296089 60296217 -83986272 + L2 LINE L2 2894 3022 -250 775 132 35 0 chr12 60296217 60296331 -83986158 + FLAM_C SINE Alu 1 118 -15 298 0 48 0 chr12 60296332 60296374 -83986115 + (GA)n Simple_repeat Simple_repeat 1 44 0 218 279 39 48 chr12 60296859 60296963 -83985526 - L2 LINE L2 -52 3261 3159 1976 112 36 4 chr12 60297013 60297314 -83985175 - AluSx SINE Alu 0 310 1 498 210 0 80 chr12 60297327 60297391 -83985098 + MER112 DNA MER1_type 17 85 -175 2193 114 27 0 chr12 60297391 60297688 -83984801 + AluSx SINE Alu 1 305 -7 498 210 0 80 chr12 60297688 60297799 -83984690 + MER112 DNA MER1_type 85 178 -82 2106 132 0 22 chr12 60297799 60298118 -83984371 - AluSx SINE Alu 0 312 1 897 126 0 0 chr12 60298193 60298312 -83984177 - FLAM_C SINE Alu -18 125 7 1572 178 37 85 chr12 60298325 60298735 -83983754 + MLT1B LTR MaLR 1 390 0 279 0 0 0 chr12 60298829 60298860 -83983629 + (TG)n Simple_repeat Simple_repeat 1 31 0 2151 91 0 4 chr12 60298860 60299124 -83983365 - AluSc SINE Alu -33 276 14 293 266 16 0 chr12 60299235 60299299 -83983190 - MER96 DNA MER1_type? -85 90 26 185 273 23 0 chr12 60299943 60299987 -83982502 - L2 LINE L2 -15 3298 3254 * 615 255 104 24 chr12 60299959 60300171 -83982318 - MIR SINE MIR -26 236 8 601 137 0 68 chr12 60300349 60300466 -83982023 - L1MB3 LINE L1 -31 6152 6044 1598 164 53 33 chr12 60300535 60300839 -83981650 + AluJo SINE Alu 1 310 -2 2216 132 7 0 chr12 60300841 60301151 -83981338 + AluSx SINE Alu 1 312 0 400 289 29 0 chr12 60302338 60302442 -83980047 + MIR SINE MIR 23 129 -133 432 209 0 9 chr12 60302445 60302560 -83979929 - L1MA4A LINE L1 0 6303 6190 4384 153 11 66 chr12 60302564 60303726 -83978763 - L1PB4 LINE L1 -101 6055 4944 216 282 56 0 chr12 60303727 60303798 -83978691 + MIR SINE MIR 131 205 -57 746 243 85 6 chr12 60304027 60304204 -83978285 - MIR SINE MIR 0 262 72 214 272 22 33 chr12 60305013 60305105 -83977384 - MIR3 SINE MIR 0 208 118 2193 134 96 18 chr12 60306466 60306861 -83975628 - MSTB LTR MaLR 0 426 1 224 114 68 0 chr12 60308064 60308108 -83974381 + (ATAGG)n Simple_repeat Simple_repeat 4 50 0 225 326 62 7 chr12 60308210 60308354 -83974135 - L1ME LINE L1 -262 5859 5708 234 318 0 28 chr12 60309018 60309125 -83973364 + CT-rich Low_complexity Low_complexity 1 104 0 2364 99 0 3 chr12 60315101 60315405 -83967084 + AluSc SINE Alu 1 303 -6 753 267 35 10 chr12 60315875 60316077 -83966412 + L2 LINE L2 3107 3313 0 1694 193 37 85 chr12 60316184 60316703 -83965786 - MLT1D LTR MaLR -6 499 6 302 293 121 26 chr12 60317137 60317253 -83965236 - MIR SINE MIR -56 152 26 52 0 0 0 chr12 60317342 60317394 -83965095 + AT_rich Low_complexity Low_complexity 1 52 0 297 109 0 0 chr12 60317463 60317509 -83964980 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 1781 151 0 54 chr12 60317511 60317809 -83964680 - AluJo SINE Alu -30 282 1 225 159 45 0 chr12 60317838 60317882 -83964607 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 216 222 93 19 chr12 60318050 60318104 -83964385 - MER91 DNA MER1_type 0 196 139 243 236 194 0 chr12 60319441 60319513 -83962976 - MIR SINE MIR -123 139 54 991 261 43 0 chr12 60319644 60319851 -83962638 + MIR SINE MIR 3 218 -44 325 263 158 58 chr12 60320166 60320547 -83961942 - L2 LINE L2 -32 3281 2863 185 344 78 61 chr12 60320533 60320763 -83961726 - L2 LINE L2 -747 2567 2334 * 671 278 45 73 chr12 60320810 60321235 -83961254 - MLT1K LTR MaLR -28 560 148 254 340 39 46 chr12 60321868 60322021 -83960468 - L2 LINE L2 -218 3054 2903 2109 123 0 0 chr12 60323832 60324116 -83958373 - AluSx SINE Alu -24 288 5 201 279 150 29 chr12 60324131 60324239 -83958250 - MIR SINE MIR -108 154 31 1416 137 0 0 chr12 60324296 60324526 -83957963 - AluSg/x SINE Alu 0 314 85 341 235 12 24 chr12 60325518 60325603 -83956886 - L2 LINE L2 -3 3310 3227 180 265 61 0 chr12 60325707 60325753 -83956736 - L3 LINE CR1 -3 1574 1526 385 353 33 0 chr12 60325753 60325903 -83956586 - MER5A DNA MER1_type 0 189 35 256 324 56 9 chr12 60325929 60326037 -83956452 - MIR SINE MIR -66 142 30 299 266 85 21 chr12 60326282 60326376 -83956113 - MLT1K LTR MaLR -405 100 1 231 206 48 0 chr12 60326420 60326483 -83956006 - MLT1L LTR MaLR -4 611 546 318 202 112 34 chr12 60327644 60327733 -83954756 - HAL1 LINE L1 -426 2081 1986 652 286 82 0 chr12 60327735 60327941 -83954548 - L2 LINE L2 -575 2739 2517 590 274 40 54 chr12 60327962 60328185 -83954304 - L2 LINE L2 -2 3311 3092 427 302 19 0 chr12 60328202 60328221 -83954268 - L1MA10 LINE L1 0 6334 6316 791 200 18 59 chr12 60328221 60328441 -83954048 - L1ME2 LINE L1 -11 6153 5943 206 294 20 0 chr12 60328447 60328498 -83953991 - L2 LINE L2 -603 2711 2660 738 234 63 49 chr12 60328563 60328768 -83953721 - MIR SINE MIR 0 262 55 284 254 0 0 chr12 60328782 60328841 -83953648 - MIR SINE MIR -1 261 203 2838 58 0 6 chr12 60328848 60329207 -83953282 - L1PA8 LINE L1 0 6172 5816 597 230 0 17 chr12 60329211 60329385 -83953104 - L1PA3 LINE L1 -3 6152 5982 22 0 0 0 chr12 60329552 60329574 -83952915 + AT_rich Low_complexity Low_complexity 1 22 0 334 322 14 14 chr12 60329724 60329870 -83952619 + GA-rich Low_complexity Low_complexity 2 147 0 219 326 0 58 chr12 60329964 60330154 -83952335 + GA-rich Low_complexity Low_complexity 2 180 0 6394 35 0 0 chr12 60330235 60331316 -83951173 - L1PA4 LINE L1 -124 6031 4951 2523 86 13 33 chr12 60331298 60331711 -83950778 - L1PA8 LINE L1 -335 5837 5422 * 200 164 179 60 chr12 60331713 60331780 -83950709 - MIR SINE MIR -132 130 56 1626 161 79 10 chr12 60332104 60332395 -83950094 + AluJb SINE Alu 1 311 -1 1984 131 85 11 chr12 60332562 60332937 -83949552 - MER57A LTR ERV1 0 403 1 1538 193 13 51 chr12 60332959 60333270 -83949219 + AluJo SINE Alu 1 299 -13 1950 162 0 10 chr12 60333801 60334103 -83948386 + AluJo SINE Alu 11 309 -3 3372 165 54 3 chr12 60334165 60334754 -83947735 + LTR31 LTR ERV1 1 619 0 252 232 30 37 chr12 60334976 60335140 -83947349 + (TTATA)n Simple_repeat Simple_repeat 4 166 0 238 155 31 70 chr12 60335174 60335303 -83947186 + (TATAA)n Simple_repeat Simple_repeat 2 125 0 2320 114 0 0 chr12 60335328 60335627 -83946862 + AluSx SINE Alu 1 299 -13 3858 39 2 0 chr12 60335745 60336204 -83946285 - L1PA4 LINE L1 -2 6153 5694 3696 23 0 0 chr12 60336206 60336649 -83945840 + L1PA4 LINE L1 5275 5717 -438 1552 207 47 7 chr12 60337176 60337476 -83945013 - AluJb SINE Alu 0 312 1 261 250 24 12 chr12 60337935 60338019 -83944470 + CT-rich Low_complexity Low_complexity 4 88 0 1168 226 199 19 chr12 60338165 60338581 -83943908 - MLT1J LTR MaLR -20 491 1 241 230 72 58 chr12 60338872 60339011 -83943478 - L1ME1 LINE L1 0 6166 6026 * 581 77 0 0 chr12 60339010 60339088 -83943401 - THE1B-int LTR MaLR -1502 78 1 2326 130 8 30 chr12 60339090 60339460 -83943029 - THE1B LTR MaLR -2 362 1 823 108 0 23 chr12 60339460 60339590 -83942899 - THE1C LTR MaLR -248 127 1 6267 119 190 1 chr12 60339590 60340664 -83941825 - THE1C-int LTR MaLR 0 1580 304 871 229 61 9 chr12 60340665 60340896 -83941593 - MER52C LTR ERV1 -677 601 359 290 222 16 0 chr12 60341556 60341619 -83940870 - MER52A LTR ERV1 -1691 64 1 1348 121 5 5 chr12 60341621 60341819 -83940670 - MER52A-int LTR ERV1 -3 7088 6891 315 170 0 0 chr12 60341816 60341869 -83940620 - MER52A-int LTR ERV1 -462 5484 5432 * 697 195 7 7 chr12 60341874 60342023 -83940466 - MER52A-int LTR ERV1 -1256 4690 4542 * 4396 203 67 54 chr12 60342019 60342845 -83939644 - MER52A-int LTR ERV1 -2417 5021 4207 1814 133 44 48 chr12 60342845 60343139 -83939350 - AluSx SINE Alu -19 293 1 4396 203 67 54 chr12 60343139 60343482 -83939007 - MER52A-int LTR ERV1 -3231 4207 2226 1297 173 58 0 chr12 60343481 60343724 -83938765 - MER52A-int LTR ERV1 -3938 3599 3343 * 5937 70 7 16 chr12 60343814 60344464 -83938025 - L1PA8A LINE L1 0 6131 5488 2296 123 0 0 chr12 60344464 60344765 -83937724 - AluSx SINE Alu -11 301 1 5937 70 7 16 chr12 60344765 60344944 -83937545 - L1PA8A LINE L1 -643 5488 5309 2144 162 23 15 chr12 60344953 60345399 -83937090 - MER52A-int LTR ERV1 -3832 2381 1419 751 150 6 50 chr12 60345401 60345561 -83936928 - MER52A-int LTR ERV1 -4804 1142 990 4946 148 38 27 chr12 60345622 60346542 -83935947 - MER52A-int LTR ERV1 -5413 1792 717 9216 161 9 8 chr12 60346542 60348044 -83934445 - MER52A-int LTR ERV1 -3890 3201 1698 3829 121 20 0 chr12 60348160 60348715 -83933774 - MER52A-int LTR ERV1 -6520 571 6 4889 193 43 12 chr12 60348719 60349669 -83932820 - MER52A LTR ERV1 0 1755 776 266 246 0 0 chr12 60349761 60349818 -83932671 - MER52A LTR ERV1 -1694 61 5 2453 118 35 40 chr12 60349818 60350243 -83932246 + L1PA16 LINE L1 5735 6157 -9 180 0 0 0 chr12 60350253 60350273 -83932216 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2049 170 13 42 chr12 60350395 60350843 -83931646 + MER65C LTR ERV1 27 461 0 572 316 19 81 chr12 60351139 60351446 -83931043 - L2 LINE L2 0 3272 2985 95 77 0 0 chr12 60351871 60352078 -83930411 + GC_rich Low_complexity Low_complexity 1 207 0 1224 128 16 5 chr12 60352123 60352310 -83930179 + AluSp SINE Alu 108 296 -17 711 153 145 0 chr12 60352310 60352434 -83930055 + AluSg/x SINE Alu 134 275 -37 22 0 0 0 chr12 60352441 60352463 -83930026 + GC_rich Low_complexity Low_complexity 1 22 0 2482 63 0 0 chr12 60352543 60352842 -83929647 + AluY SINE Alu 1 299 -12 1700 175 3 14 chr12 60352842 60352948 -83929541 + AluJo SINE Alu 30 136 -216 2482 70 3 0 chr12 60352948 60353248 -83929241 + AluY SINE Alu 1 301 -10 1700 175 3 14 chr12 60353248 60353467 -83929022 + AluJo SINE Alu 136 352 0 2281 117 3 0 chr12 60354447 60354747 -83927742 + AluSx SINE Alu 1 301 -11 1791 123 83 0 chr12 60354747 60355024 -83927465 + AluSx SINE Alu 1 300 -12 2436 107 0 0 chr12 60355024 60355333 -83927156 + AluSc SINE Alu 1 309 0 923 233 24 5 chr12 60355384 60355606 -83926883 - MIR SINE MIR 0 262 37 201 94 0 0 chr12 60355614 60355646 -83926843 + (TTATG)n Simple_repeat Simple_repeat 4 35 0 1072 53 27 0 chr12 60355650 60355800 -83926689 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 974 237 65 8 chr12 60355941 60356186 -83926303 + MIR SINE MIR 4 262 0 4648 132 21 29 chr12 60356890 60357903 -83924586 + L1MA1 LINE L1 5122 6122 -180 1418 154 0 36 chr12 60358522 60358802 -83923687 + MER61E LTR ERV1 240 509 -60 398 290 57 16 chr12 60359475 60359599 -83922890 + L2 LINE L2 3142 3270 -2 653 235 0 15 chr12 60359673 60359809 -83922680 - MLT1A1 LTR MaLR 0 365 232 3995 121 5 22 chr12 60359811 60360432 -83922057 - MER4B LTR ERV1 0 610 1 2276 120 12 0 chr12 60360432 60360765 -83921724 - MER4B-int LTR ERV1 0 6758 6422 293 244 17 52 chr12 60362353 60362468 -83920021 + L1MC4a LINE L1 5560 5670 -500 689 238 106 66 chr12 60362469 60362772 -83919717 - L2 LINE L2 0 3313 2999 297 335 79 19 chr12 60362790 60363005 -83919484 + L1MC4a LINE L1 5705 5932 -1876 492 220 145 31 chr12 60363667 60363826 -83918663 - MIR3 SINE MIR -17 191 15 268 250 0 70 chr12 60365376 60365476 -83917013 + G-rich Low_complexity Low_complexity 6 98 0 198 0 0 0 chr12 60366219 60366241 -83916248 + (T)n Simple_repeat Simple_repeat 1 22 0 408 143 0 0 chr12 60367551 60367607 -83914882 - AluS SINE Alu -31 280 225 492 220 145 31 chr12 60368450 60368609 -83913880 - MIR3 SINE MIR -17 191 15 294 283 40 0 chr12 60370211 60370310 -83912179 - MIR SINE MIR -61 147 45 2333 99 3 3 chr12 60370983 60371286 -83911203 + AluSx SINE Alu 2 304 -8 1281 152 105 14 chr12 60371410 60371706 -83910783 + MER33 DNA MER1_type 1 323 -1 806 196 0 0 chr12 60371776 60371909 -83910580 + FLAM_C SINE Alu 1 133 0 1849 137 0 0 chr12 60374206 60374462 -83908027 - AluSx SINE Alu -16 296 41 2310 83 3 0 chr12 60374755 60375056 -83907433 - AluSp SINE Alu -11 302 1 618 261 76 38 chr12 60375057 60375268 -83907221 - MIR SINE MIR -4 258 40 232 364 84 0 chr12 60375432 60375586 -83906903 - L2 LINE L2 -5 3267 3101 360 281 59 22 chr12 60376821 60376956 -83905533 - MIR SINE MIR -25 237 98 2384 81 0 3 chr12 60377012 60377321 -83905168 + AluY SINE Alu 1 308 -3 606 123 0 28 chr12 60377332 60377575 -83904914 + AluSx SINE Alu 5 308 -2 228 296 43 0 chr12 60377664 60377779 -83904710 + GA-rich Low_complexity Low_complexity 2 121 0 240 59 0 0 chr12 60379377 60379411 -83903078 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 268 250 0 70 chr12 60383536 60383636 -83898853 + G-rich Low_complexity Low_complexity 6 98 0 2156 95 11 0 chr12 60384658 60384976 -83897513 - AluSq SINE Alu 0 321 1 1884 146 0 7 chr12 60384978 60385272 -83897217 - AluSx SINE Alu -20 292 1 762 236 134 0 chr12 60385273 60385489 -83897000 - MIR SINE MIR -5 257 13 1887 145 0 16 chr12 60386004 60386314 -83896175 + AluJo SINE Alu 1 305 -7 373 271 44 118 chr12 60386326 60386802 -83895687 + L1MC4 LINE L1 7602 8042 0 315 227 204 15 chr12 60386814 60386946 -83895543 + L2 LINE L2 2698 2854 -460 1248 99 12 0 chr12 60386964 60387135 -83895354 - AluSg/x SINE Alu -12 300 128 593 249 53 71 chr12 60387169 60387394 -83895095 + L2 LINE L2 3092 3312 -1 1831 145 16 10 chr12 60388724 60389035 -83893454 - L1MB3 LINE L1 -7 6176 5864 231 356 0 0 chr12 60389041 60389114 -83893375 - L2 LINE L2 -1 3312 3240 791 208 38 6 chr12 60389493 60389676 -83892813 - MER5A DNA MER1_type 0 189 1 222 221 0 44 chr12 60392798 60392866 -83889623 + CT-rich Low_complexity Low_complexity 2 66 0 1753 174 0 23 chr12 60394602 60394907 -83887582 - AluJo SINE Alu -14 298 1 579 313 56 11 chr12 60394912 60395180 -83887309 - L2 LINE L2 -12 3301 3022 370 339 48 21 chr12 60395339 60395525 -83886964 + MIR SINE MIR 20 210 -52 2209 108 0 7 chr12 60395836 60396142 -83886347 + AluSg SINE Alu 1 304 -6 3254 114 145 31 chr12 60396626 60396781 -83885708 - MER39B LTR ERV1 0 653 517 2070 109 0 7 chr12 60396781 60397083 -83885406 - AluSg SINE Alu -10 300 1 3254 114 145 31 chr12 60397083 60397513 -83884976 - MER39B LTR ERV1 -136 517 1 633 227 16 62 chr12 60397569 60397763 -83884726 - MER39B-int LTR ERV1 -148 6183 5999 832 126 209 21 chr12 60397767 60397958 -83884531 - MER4B LTR ERV1 -383 227 1 532 226 86 77 chr12 60397970 60398144 -83884345 - MER39B-int LTR ERV1 -4419 2179 1999 1807 158 16 7 chr12 60398144 60398448 -83884041 - AluJb SINE Alu -5 307 1 532 226 86 77 chr12 60398448 60398610 -83883879 - MER39B-int LTR ERV1 -4599 1999 1840 2055 102 0 62 chr12 60398728 60399052 -83883437 - AluSx SINE Alu -8 304 1 643 175 61 78 chr12 60399052 60399374 -83883115 - MER39B-int LTR ERV1 -4565 1766 1040 731 126 8 71 chr12 60399393 60399520 -83882969 - AluJb SINE Alu -186 126 8 291 89 22 0 chr12 60399529 60399574 -83882915 - MER39B-int LTR ERV1 -2753 2127 2082 1110 179 155 36 chr12 60399644 60399980 -83882509 - MER39B-int LTR ERV1 -5096 1235 860 933 178 83 108 chr12 60400021 60400339 -83882150 - MER39B-int LTR ERV1 -4449 1497 362 1420 221 12 36 chr12 60400397 60400728 -83881761 - MER39B-int LTR ERV1 -6008 323 1 2193 126 48 3 chr12 60400735 60401082 -83881407 - MER39B LTR ERV1 -25 628 263 2191 98 10 0 chr12 60401082 60401388 -83881101 - AluSg SINE Alu -1 309 1 1104 240 23 143 chr12 60401423 60401733 -83880756 - MER57-int LTR ERV1 -4002 2329 1984 2254 99 0 3 chr12 60401733 60402037 -83880452 - AluSx SINE Alu -8 304 2 1104 240 23 143 chr12 60402037 60402416 -83880073 - MER57-int LTR ERV1 -4347 1984 753 453 117 0 39 chr12 60402416 60402493 -83879996 - AluSc SINE Alu -8 301 228 1511 65 0 0 chr12 60402493 60402677 -83879812 - AluSc SINE Alu -125 184 1 1098 109 284 0 chr12 60402677 60402888 -83879601 - MER39B LTR ERV1 -382 271 1 484 252 155 13 chr12 60405683 60405838 -83876651 - MER5A DNA MER1_type -8 181 5 731 205 155 15 chr12 60407827 60408027 -83874462 + MIR SINE MIR 7 234 -28 201 39 0 0 chr12 60409337 60409363 -83873126 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2334 74 6 6 chr12 60409949 60410290 -83872199 + AluSq SINE Alu 1 341 0 439 269 35 65 chr12 60412629 60412830 -83869659 - L2 LINE L2 -1 3312 3118 70 78 0 0 chr12 60412987 60413141 -83869348 + GC_rich Low_complexity Low_complexity 1 154 0 27 73 0 0 chr12 60413152 60413207 -83869282 + GC_rich Low_complexity Low_complexity 1 55 0 32 26 0 0 chr12 60413370 60413409 -83869080 + GC_rich Low_complexity Low_complexity 1 39 0 403 222 242 0 chr12 60419779 60419878 -83862611 - MER45A DNA AcHobo 0 178 56 191 36 36 0 chr12 60424887 60424915 -83857574 + (CA)n Simple_repeat Simple_repeat 2 30 0 389 323 94 15 chr12 60425263 60425464 -83857025 + MIR SINE MIR 35 251 -11 907 138 79 0 chr12 60425701 60425853 -83856636 + AluSg/x SINE Alu 135 298 -12 1869 168 68 25 chr12 60426302 60426661 -83855828 - L1MB5 LINE L1 -4 6170 5791 189 0 0 0 chr12 60426661 60426682 -83855807 + (TA)n Simple_repeat Simple_repeat 2 22 0 1869 168 68 25 chr12 60426682 60426716 -83855773 - L1MB5 LINE L1 -383 5791 5760 687 148 35 56 chr12 60426748 60426890 -83855599 - L1MB3 LINE L1 -1 6182 6044 1460 162 53 33 chr12 60426959 60427261 -83855228 + AluJo SINE Alu 1 308 -4 2008 139 7 0 chr12 60427266 60427576 -83854913 + AluSx SINE Alu 1 312 0 401 289 29 0 chr12 60428763 60428867 -83853622 + MIR SINE MIR 23 129 -133 434 209 0 9 chr12 60428870 60428985 -83853504 - L1MA4A LINE L1 0 6303 6190 4602 153 11 66 chr12 60428989 60430151 -83852338 - L1PB4 LINE L1 -101 6055 4944 221 282 56 0 chr12 60430152 60430223 -83852266 + MIR SINE MIR 131 205 -57 751 243 85 6 chr12 60430452 60430629 -83851860 - MIR SINE MIR 0 262 72 210 272 22 33 chr12 60431438 60431530 -83850959 - MIR3 SINE MIR 0 208 118 2162 134 96 18 chr12 60432891 60433286 -83849203 - MSTB LTR MaLR 0 426 1 224 114 68 0 chr12 60434489 60434533 -83847956 + (ATAGG)n Simple_repeat Simple_repeat 4 50 0 233 326 62 7 chr12 60434635 60434779 -83847710 - L1MB3 LINE L1 -262 5859 5708 195 265 20 0 chr12 60437874 60437923 -83844566 - MIR3 SINE MIR -50 158 109 1636 202 3 0 chr12 60439129 60439431 -83843058 + AluSx SINE Alu 1 303 -9 12941 181 30 8 chr12 60439457 60441754 -83840735 + L1M1 LINE L1 13 2360 -5205 6424 70 1 20 chr12 60441760 60442160 -83840329 - L1PA8 LINE L1 -1 6171 5765 2385 90 0 0 chr12 60442160 60442471 -83840018 - AluY SINE Alu 0 311 1 6424 70 1 20 chr12 60442471 60442926 -83839563 - L1PA8 LINE L1 -407 5765 5332 * 8199 152 25 11 chr12 60442922 60444892 -83837597 + L1M1 LINE L1 2347 4341 -3224 7269 45 23 2 chr12 60444892 60445580 -83836909 - L1PA5 LINE L1 -1 6153 5451 2383 75 0 0 chr12 60445580 60445885 -83836604 - AluY SINE Alu -6 305 1 7269 45 23 2 chr12 60445885 60446429 -83836060 - L1PA5 LINE L1 -703 5451 4920 1045 58 0 7 chr12 60446429 60446566 -83835923 - L1P3 LINE L1 -377 5795 5660 32707 71 10 4 chr12 60446759 60451204 -83831285 - L1P3 LINE L1 -756 5390 921 1922 190 35 78 chr12 60451204 60451830 -83830659 + LTR5 LTR ERVK 371 969 0 12581 55 5 1 chr12 60451830 60453353 -83829136 + HERV17 LTR ERV1 1767 3294 -5332 8824 68 1 0 chr12 60453354 60454433 -83828056 - L1P LINE L1 -5065 1081 2 3804 64 4 2 chr12 60454433 60454932 -83827557 - L1P LINE L1 -1099 5047 4548 333 213 56 65 chr12 60455050 60455139 -83827350 - L1M4 LINE L1 -2967 3179 3090 1726 25 0 0 chr12 60455139 60455341 -83827148 - SVA Other Other -3 1383 1182 333 213 56 65 chr12 60455341 60455359 -83827130 - L1M4 LINE L1 -3056 3090 3073 6558 18 0 0 chr12 60455371 60456104 -83826385 - L1HS LINE L1 0 6155 5423 7624 25 7 227 chr12 60456104 60457612 -83824877 - SVA Other Other -210 1176 1 32378 96 8 11 chr12 60457613 60462176 -83820313 - L1P LINE L1 -1588 4558 7 213 271 14 0 chr12 60462540 60462610 -83819879 + (TG)n Simple_repeat Simple_repeat 1 71 0 28 0 0 0 chr12 60464082 60464110 -83818379 + AT_rich Low_complexity Low_complexity 1 28 0 235 170 19 19 chr12 60464767 60464820 -83817669 + CT-rich Low_complexity Low_complexity 2 54 0 1725 172 3 7 chr12 60470223 60470531 -83811958 + AluSx SINE Alu 6 312 0 19883 166 23 36 chr12 60470552 60476675 -83805814 + L1M1 LINE L1 12 6053 -1512 8161 85 27 0 chr12 60476683 60477744 -83804745 - THE1-int LTR MaLR -450 1130 41 224 114 68 0 chr12 60479728 60479772 -83802717 + (ATAGG)n Simple_repeat Simple_repeat 4 50 0 233 326 62 7 chr12 60479874 60480018 -83802471 - L1ME LINE L1 -262 5859 5708 195 265 20 0 chr12 60483113 60483162 -83799327 - MIR3 SINE MIR -50 158 109 1636 202 3 0 chr12 60484368 60484670 -83797819 + AluSx SINE Alu 1 303 -9 12941 181 30 8 chr12 60484696 60486993 -83795496 + L1M1 LINE L1 13 2360 -5205 6424 70 1 20 chr12 60486999 60487399 -83795090 - L1PA8 LINE L1 -1 6171 5765 2352 93 0 0 chr12 60487399 60487710 -83794779 - AluY SINE Alu 0 311 1 6424 70 1 20 chr12 60487710 60488165 -83794324 - L1PA8 LINE L1 -407 5765 5332 * 8190 153 25 11 chr12 60488161 60490139 -83792350 + L1M1 LINE L1 2347 4350 -3215 * 34626 60 3 5 chr12 60490133 60490822 -83791667 - L1PA5 LINE L1 -1 6153 5464 2383 75 0 0 chr12 60490822 60491127 -83791362 - AluY SINE Alu -6 305 1 34626 60 3 5 chr12 60491127 60495679 -83786810 - L1PA5 LINE L1 -690 5464 921 1922 190 35 78 chr12 60495679 60496305 -83786184 + LTR5 LTR ERVK 371 969 0 12594 54 5 1 chr12 60496305 60497828 -83784661 + HERV17 LTR ERV1 1767 3294 -5332 3087 48 0 0 chr12 60497829 60498200 -83784289 - L1P LINE L1 -5065 1081 711 2489 139 56 16 chr12 60499774 60500220 -83782269 - Tigger1 DNA MER2_type -10 2408 1945 2014 153 52 13 chr12 60500219 60500435 -83782054 - Tigger1 DNA MER2_type -1308 1110 871 * 1700 133 79 4 chr12 60500435 60500714 -83781775 - AluJb SINE Alu -12 300 1 2014 153 52 13 chr12 60500714 60500882 -83781607 - Tigger1 DNA MER2_type -1547 871 711 2190 78 7 3 chr12 60500886 60501181 -83781308 + AluY SINE Alu 1 296 -15 2149 118 0 6 chr12 60501873 60502187 -83780302 - AluSx SINE Alu 0 312 1 2164 92 11 0 chr12 60503910 60504228 -83778261 - AluSq SINE Alu 0 321 1 857 159 0 0 chr12 60504231 60504369 -83778120 - FLAM_C SINE Alu -3 140 3 324 0 0 0 chr12 60504376 60504412 -83778077 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 427 103 0 0 chr12 60504416 60504474 -83778015 - Alu SINE Alu -28 281 224 2067 98 0 7 chr12 60504479 60504808 -83777681 - AluY SINE Alu 0 327 1 2046 99 3 7 chr12 60504813 60505107 -83777382 - AluSx SINE Alu -19 293 1 1916 125 0 42 chr12 60505308 60505620 -83776869 + AluSx SINE Alu 1 299 -13 247 232 36 0 chr12 60505624 60505680 -83776809 + AluS SINE Alu 1 58 -250 1654 170 0 0 chr12 60505680 60505956 -83776533 + AluJo SINE Alu 37 312 0 729 214 79 11 chr12 60506044 60506222 -83776267 + MIR SINE MIR 3 192 -70 2184 86 3 16 chr12 60506250 60506554 -83775935 - AluSp SINE Alu -12 301 2 1121 74 43 0 chr12 60506588 60506751 -83775738 + AluY SINE Alu 127 296 -15 1947 113 0 69 chr12 60507443 60507778 -83774711 - AluSx SINE Alu 0 312 1 685 105 0 0 chr12 60508093 60508188 -83774301 - AluSg/x SINE Alu -14 296 202 22 35 0 0 chr12 60508218 60508247 -83774242 + AT_rich Low_complexity Low_complexity 1 29 0 2234 95 0 3 chr12 60508255 60508549 -83773940 + AluSx SINE Alu 1 293 -19 2271 81 0 3 chr12 60511071 60511369 -83771120 + AluY SINE Alu 2 298 -13 1202 153 49 0 chr12 60511379 60511582 -83770907 + AluSg/x SINE Alu 84 296 -14 1796 134 0 4 chr12 60511865 60512133 -83770356 + AluJb SINE Alu 1 267 -45 1506 174 36 4 chr12 60512305 60512581 -83769908 + Tigger1 DNA MER2_type 2 286 -2132 2230 89 0 7 chr12 60512593 60512895 -83769594 - AluY SINE Alu -11 300 1 2046 99 3 7 chr12 60512900 60513194 -83769295 - AluSx SINE Alu -19 293 1 4219 48 0 0 chr12 60516403 60516904 -83765585 - L1PA5 LINE L1 -189 5965 5465 1706 81 0 0 chr12 60516904 60517127 -83765362 - AluY SINE Alu -6 305 83 335 189 31 39 chr12 60517189 60517364 -83765125 + C-rich Low_complexity Low_complexity 1 173 0 25 0 0 0 chr12 60517461 60517486 -83765003 + GC_rich Low_complexity Low_complexity 1 25 0 3160 114 30 2 chr12 60517749 60518250 -83764239 + L1MA3 LINE L1 5790 6304 -1 707 243 74 78 chr12 60518266 60518781 -83763708 + L1 LINE L1 2278 2790 -3356 245 296 14 113 chr12 60618961 60619103 -83663386 + L2 LINE L2 3137 3264 -8 21 36 0 0 chr12 60619453 60619481 -83663008 + AT_rich Low_complexity Low_complexity 1 28 0 224 0 65 0 chr12 60619549 60619580 -83662909 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 5988 88 15 8 chr12 60619580 60620475 -83662014 - L1PA8A LINE L1 -21 6110 5210 344 250 0 22 chr12 60620607 60620699 -83661790 + L1MC4 LINE L1 6614 6703 -1339 276 227 0 0 chr12 60620702 60620790 -83661699 + (TA)n Simple_repeat Simple_repeat 1 88 0 330 264 23 0 chr12 60620792 60620879 -83661610 + L1MC4 LINE L1 6613 6701 -1341 185 180 20 0 chr12 60620881 60620931 -83661558 + (TA)n Simple_repeat Simple_repeat 1 51 0 797 121 23 15 chr12 60620972 60621104 -83661385 - HERVL LTR ERVL -3441 2213 2081 * 14508 65 8 1 chr12 60621097 60622931 -83659558 + HERVL-A1 LTR ERVL 3026 4872 -782 5806 85 0 0 chr12 60623031 60623795 -83658694 + HERVL-A1 LTR ERVL 4891 5654 0 3264 92 0 11 chr12 60623795 60624242 -83658247 + MLT2A1 LTR ERVL 1 442 -2 218 171 0 0 chr12 60624448 60624483 -83658006 + (ATG)n Simple_repeat Simple_repeat 1 35 0 280 340 201 0 chr12 60624673 60624941 -83657548 - L2 LINE L2 -993 2321 2000 30 77 0 0 chr12 60625539 60625604 -83656885 + AT_rich Low_complexity Low_complexity 1 65 0 696 299 61 22 chr12 60626021 60626913 -83655576 - L1ME3 LINE L1 -237 5994 5069 274 239 14 28 chr12 60626920 60626991 -83655498 - L1 LINE L1 -1172 5043 4974 23 0 0 0 chr12 60627131 60627154 -83655335 + AT_rich Low_complexity Low_complexity 1 23 0 341 298 101 0 chr12 60627252 60627430 -83655059 - L1ME3 LINE L1 -4689 1707 1512 1946 151 0 0 chr12 60627864 60628155 -83654334 - AluSx SINE Alu -21 291 1 2278 220 23 88 chr12 60628729 60629437 -83653052 - L1ME1 LINE L1 -9 6157 5496 1617 237 58 23 chr12 60629431 60630039 -83652450 + L1M4 LINE L1 4553 5181 -965 * 257 191 176 52 chr12 60630114 60630250 -83652239 + L1ME2 LINE L1 6011 6163 -1 537 86 0 0 chr12 60630252 60630333 -83652156 + L1PA7 LINE L1 6071 6151 -3 349 289 36 0 chr12 60632008 60632109 -83650380 - MER5A DNA MER1_type -45 141 29 2107 54 0 0 chr12 60632406 60632666 -83649823 + L1PA7 LINE L1 5892 6151 -3 2067 113 0 4 chr12 60633517 60633791 -83648698 - AluSx SINE Alu -39 273 1 23 68 0 0 chr12 60633997 60634041 -83648448 + AT_rich Low_complexity Low_complexity 1 44 0 236 323 136 45 chr12 60634698 60634853 -83647636 - MIR SINE MIR -65 197 29 2411 91 0 0 chr12 60635330 60635637 -83646852 + AluY SINE Alu 1 307 -4 2464 117 11 13 chr12 60635664 60636040 -83646449 + THE1C LTR MaLR 1 375 0 183 205 0 0 chr12 60636179 60636218 -83646271 + (TA)n Simple_repeat Simple_repeat 2 40 0 254 345 59 17 chr12 60637065 60637184 -83645305 + MIR SINE MIR 21 144 -64 1252 214 31 21 chr12 60637244 60637533 -83644956 + AluJo SINE Alu 5 296 -16 579 347 121 60 chr12 60638186 60639420 -83643069 + L2 LINE L2 102 1410 -1904 287 275 22 33 chr12 60639432 60639523 -83642966 - MER21B LTR ERV1 -454 409 320 22 35 0 0 chr12 60639616 60639645 -83642844 + AT_rich Low_complexity Low_complexity 1 29 0 193 376 38 38 chr12 60639654 60639840 -83642649 - L2 LINE L2 -1732 1582 1397 321 131 0 0 chr12 60639844 60639905 -83642584 + (TA)n Simple_repeat Simple_repeat 1 61 0 26 30 0 0 chr12 60640172 60640205 -83642284 + AT_rich Low_complexity Low_complexity 1 33 0 322 410 50 50 chr12 60640284 60640623 -83641866 + L2 LINE L2 2930 3268 -4 192 77 0 0 chr12 60641011 60641037 -83641452 + (A)n Simple_repeat Simple_repeat 1 26 0 386 211 39 39 chr12 60641925 60642053 -83640436 - MER103 DNA DNA -2 164 37 400 340 51 21 chr12 60643770 60644005 -83638484 - MLT1L LTR MaLR -246 369 128 571 110 12 0 chr12 60644496 60644578 -83637911 + U6 snRNA snRNA 2 84 -23 22 0 0 0 chr12 60644636 60644658 -83637831 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr12 60644891 60644930 -83637559 + (CA)n Simple_repeat Simple_repeat 1 39 0 316 217 43 54 chr12 60645023 60645115 -83637374 + MER103 DNA DNA 11 101 -65 414 287 51 51 chr12 60645123 60645280 -83637209 - MIR SINE MIR -3 259 103 2179 151 2 32 chr12 60647038 60647441 -83635048 - L1MC1 LINE L1 -82 6251 5861 248 339 99 51 chr12 60647554 60647929 -83634560 - L2 LINE L2 -9 3304 2912 1789 170 3 3 chr12 60648056 60648365 -83634124 + AluJb SINE Alu 1 309 0 522 0 0 0 chr12 60648601 60648659 -83633830 + (GAAA)n Simple_repeat Simple_repeat 1 58 0 406 335 74 13 chr12 60648826 60649056 -83633433 - L2 LINE L2 -756 2558 2315 202 62 62 0 chr12 60649057 60649089 -83633400 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 1794 159 29 0 chr12 60649174 60649451 -83633038 + AluSx SINE Alu 10 294 -18 202 29 57 0 chr12 60649454 60649489 -83633000 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 202 245 20 0 chr12 60649513 60649562 -83632927 - L2 LINE L2 -1082 2232 2183 248 237 17 0 chr12 60649562 60649621 -83632868 - L2 LINE L2 -1102 2212 2153 1527 207 49 23 chr12 60649740 60650126 -83632363 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr12 60650788 60650810 -83631679 + AT_rich Low_complexity Low_complexity 1 22 0 2537 53 0 0 chr12 60651362 60651664 -83630825 + AluY SINE Alu 1 302 -9 221 75 75 0 chr12 60652687 60652740 -83629749 + (TA)n Simple_repeat Simple_repeat 1 57 0 188 232 101 43 chr12 60652754 60652823 -83629666 - L3 LINE CR1 -54 1523 1451 1862 119 26 15 chr12 60652824 60653131 -83629358 - AluSx SINE Alu 0 321 12 637 313 38 58 chr12 60653355 60653668 -83628821 - L3 LINE CR1 -438 1139 833 448 229 20 52 chr12 60653676 60653829 -83628660 - LTR67 LTR ERVL -7 550 403 239 303 13 0 chr12 60653941 60654017 -83628472 - LTR67 LTR ERVL -479 78 2 2521 139 53 83 chr12 60654065 60654596 -83627893 + MLT2B2 LTR ERVL 1 515 0 283 314 138 19 chr12 60654916 60655075 -83627414 - MER5A DNA MER1_type -11 178 1 429 224 158 0 chr12 60655341 60655493 -83626996 - L1MC4a LINE L1 -1789 6019 5844 21 36 0 0 chr12 60655520 60655548 -83626941 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 60655789 60655813 -83626676 + AT_rich Low_complexity Low_complexity 1 24 0 1900 71 0 4 chr12 60655861 60656099 -83626390 - AluY SINE Alu -9 302 66 398 232 21 0 chr12 60656126 60656221 -83626268 - MLT1A1 LTR MaLR 0 365 269 * 1299 239 28 30 chr12 60656205 60656569 -83625920 + MLT1D LTR MaLR 115 477 -28 2565 150 114 18 chr12 60656919 60658318 -83624171 - SATR1 Satellite Satellite -10 1533 1 2436 180 94 33 chr12 60658348 60660810 -83621679 - SATR1 Satellite Satellite -2 2610 1 1053 213 290 18 chr12 60660834 60661228 -83621261 - SATR1 Satellite Satellite -1 501 1 11005 123 39 46 chr12 60661228 60663387 -83619102 + L1P3 LINE L1 6 2206 -4255 2328 177 112 14 chr12 60663389 60665000 -83617489 - SATR1 Satellite Satellite -2 1769 1 2413 163 107 12 chr12 60665034 60670699 -83611790 - SATR1 Satellite Satellite 0 6198 1 21 36 0 0 chr12 60671711 60671739 -83610750 + AT_rich Low_complexity Low_complexity 1 28 0 2059 170 120 40 chr12 60671827 60672303 -83610186 + MLT2B2 LTR ERVL 1 514 -1 245 211 19 0 chr12 60672553 60672605 -83609884 - MER81 DNA DNA -41 73 21 180 179 0 0 chr12 60672648 60672687 -83609802 + T-rich Low_complexity Low_complexity 2 40 0 308 182 7 0 chr12 60672697 60672900 -83609589 - AluJo SINE Alu -134 168 1 557 223 103 71 chr12 60672982 60673206 -83609283 - MIR SINE MIR -2 260 30 25 0 0 0 chr12 60673274 60673299 -83609190 + AT_rich Low_complexity Low_complexity 1 25 0 308 302 95 27 chr12 60674063 60674285 -83608204 - L1M4 LINE L1 -1875 4271 4035 319 300 53 49 chr12 60674304 60674666 -83607823 - L1M4 LINE L1 -2180 3966 3609 400 226 314 0 chr12 60674696 60674833 -83607656 + MER5A DNA MER1_type 10 189 0 34 24 0 0 chr12 60675716 60675757 -83606732 + AT_rich Low_complexity Low_complexity 1 41 0 458 304 109 42 chr12 60676395 60676938 -83605551 - HAL1b LINE L1 -497 851 273 422 251 81 38 chr12 60677969 60678180 -83604309 + LTR37A LTR ERV1 249 426 0 428 281 7 15 chr12 60678518 60678653 -83603836 - L1ME3A LINE L1 -259 5911 5778 252 217 193 12 chr12 60678752 60678835 -83603654 - L1ME3A LINE L1 -525 5639 5542 1976 176 56 2 chr12 60678989 60679414 -83603075 - MER61C LTR ERV1 0 434 1 332 312 58 38 chr12 60679721 60680064 -83602425 - L1ME3A LINE L1 -1000 5146 4797 1080 314 102 37 chr12 60680181 60680896 -83601593 - L2 LINE L2 -4 3309 2502 1060 207 121 25 chr12 60680896 60681210 -83601279 - MER2 DNA MER2_type 0 344 1 1080 314 102 37 chr12 60681210 60681538 -83600951 - L2 LINE L2 -811 2502 2196 2482 197 214 39 chr12 60681670 60687248 -83595241 - SATR1 Satellite Satellite 0 6553 1 968 246 216 43 chr12 60687289 60688000 -83594489 - SATR1 Satellite Satellite -46 833 1 733 235 292 0 chr12 60688027 60688321 -83594168 + SATR1 Satellite Satellite 1 379 -190 2405 174 102 39 chr12 60688345 60693257 -83589232 - SATR1 Satellite Satellite -2 5221 1 1310 215 239 20 chr12 60693270 60694246 -83588243 - SATR1 Satellite Satellite -3 1189 1 357 349 123 15 chr12 60694611 60694880 -83587609 + L2 LINE L2 2672 2969 -345 2389 54 0 51 chr12 60695546 60695860 -83586629 + AluY SINE Alu 1 298 -13 1682 161 31 14 chr12 60697042 60697334 -83585155 + AluJo SINE Alu 1 297 -15 217 153 17 17 chr12 60699012 60699071 -83583418 + (TA)n Simple_repeat Simple_repeat 2 60 0 333 343 0 0 chr12 60699123 60699222 -83583267 + MIR SINE MIR 59 157 -105 33 0 0 0 chr12 60701564 60701597 -83580892 + AT_rich Low_complexity Low_complexity 1 33 0 2848 85 46 5 chr12 60701959 60702347 -83580142 + MLT2A1 LTR ERVL 1 404 -40 295 119 0 68 chr12 60702382 60702441 -83580048 + MLT2A1 LTR ERVL 390 444 0 8691 72 14 3 chr12 60702441 60703562 -83578927 + HERVL-A1 LTR ERVL 1 1134 -4520 252 86 49 25 chr12 60703562 60703643 -83578846 + (TA)n Simple_repeat Simple_repeat 2 84 0 407 78 0 24 chr12 60703648 60703727 -83578762 + MLT2A1 LTR ERVL 391 444 0 1590 242 72 27 chr12 60703749 60704302 -83578187 - L1ME1 LINE L1 -5 6230 5653 1605 246 117 23 chr12 60704303 60705373 -83577116 - L1ME1 LINE L1 -3380 2835 1692 1233 71 0 0 chr12 60705411 60705566 -83576923 + L1PA8 LINE L1 5991 6145 -27 197 62 0 31 chr12 60705569 60705601 -83576888 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1909 271 77 55 chr12 60706206 60706463 -83576026 - L1ME1 LINE L1 -5451 945 695 1344 207 3 46 chr12 60706463 60706787 -83575702 - AluJb SINE Alu -2 310 1 1909 271 77 55 chr12 60706787 60707428 -83575061 - L1ME1 LINE L1 -5701 695 27 524 280 121 71 chr12 60707892 60708288 -83574201 - LTR16C LTR ERVL -5 486 71 2288 184 41 6 chr12 60709148 60709660 -83572829 - L1MA9 LINE L1 -2 6310 5781 5124 118 33 0 chr12 60709712 60710498 -83571991 - L1PA15 LINE L1 -21 6144 5333 7045 132 13 4 chr12 60710571 60712778 -83569711 - L1MA3 LINE L1 0 6305 4361 1556 188 60 17 chr12 60712768 60713120 -83569369 - L1MA9 LINE L1 -573 5739 5373 * 1214 238 27 3 chr12 60713271 60713565 -83568924 - AluJo SINE Alu -11 301 1 979 201 39 0 chr12 60713666 60713870 -83568619 - Tigger1 DNA MER2_type -4 2414 2203 731 188 38 19 chr12 60713852 60714012 -83568477 - Tigger1 DNA MER2_type -2255 163 1 * 251 273 187 29 chr12 60714406 60714545 -83567944 + L2 LINE L2 3153 3313 0 1384 217 40 4 chr12 60714639 60714756 -83567733 + AluJo SINE Alu 1 112 -200 567 29 0 0 chr12 60714756 60714825 -83567664 + (CA)n Simple_repeat Simple_repeat 2 70 0 1384 217 40 4 chr12 60714825 60714984 -83567505 + AluJo SINE Alu 112 287 -25 2128 104 0 47 chr12 60715161 60715479 -83567010 + AluSq SINE Alu 1 303 -10 1341 265 118 48 chr12 60715482 60716225 -83566264 - L1ME3 LINE L1 -1 6161 5367 2082 208 15 15 chr12 60716239 60716700 -83565789 - MER65C LTR ERV1 0 461 1 1059 42 42 6 chr12 60717071 60717236 -83565253 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 22 35 0 0 chr12 60717308 60717337 -83565152 + AT_rich Low_complexity Low_complexity 1 29 0 469 266 65 87 chr12 60717988 60718217 -83564272 + MIR SINE MIR 7 230 -32 216 67 0 0 chr12 60718232 60718262 -83564227 + (TTA)n Simple_repeat Simple_repeat 1 30 0 421 271 60 20 chr12 60720280 60720431 -83562058 + MER5A DNA MER1_type 4 160 -29 588 299 44 25 chr12 60720608 60720812 -83561677 - MIR SINE MIR -40 222 15 208 188 21 0 chr12 60720987 60721035 -83561454 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 608 337 124 47 chr12 60721066 60721841 -83560648 - L2 LINE L2 -76 3196 2365 1988 172 21 16 chr12 60722034 60722561 -83559928 - LTR8A LTR ERV1 0 727 159 3070 28 0 0 chr12 60722594 60722955 -83559534 - L1PA5 LINE L1 -1 6153 5793 6478 53 4 1 chr12 60722955 60723797 -83558692 + L1P2 LINE L1 2881 3724 -2422 3138 47 0 0 chr12 60723797 60724178 -83558311 + L1P2 LINE L1 5399 5779 -375 788 180 75 0 chr12 60724178 60724339 -83558150 - LTR8A LTR ERV1 -554 173 1 204 264 42 0 chr12 60724339 60724411 -83558078 - L2 LINE L2 -1285 2029 1955 31 0 0 0 chr12 60724792 60724823 -83557666 + AT_rich Low_complexity Low_complexity 1 31 0 398 271 146 0 chr12 60724824 60724968 -83557521 - MIR SINE MIR -67 195 31 388 308 55 25 chr12 60724986 60725223 -83557266 - L2 LINE L2 -1885 1429 1186 762 289 81 79 chr12 60726773 60727268 -83555221 - L2 LINE L2 0 3313 2818 319 293 207 11 chr12 60727538 60727712 -83554777 + MIR SINE MIR 34 241 -21 301 287 55 37 chr12 60729604 60729768 -83552721 + MLT1L LTR MaLR 150 316 -299 514 243 30 59 chr12 60729929 60730098 -83552391 + L2 LINE L2 3146 3309 -4 226 146 49 0 chr12 60730332 60730373 -83552116 - MLT1D LTR MaLR 0 626 584 1233 177 121 87 chr12 60730384 60730774 -83551715 - MLT1D LTR MaLR -102 403 1 2220 103 10 3 chr12 60731336 60731636 -83550853 - AluSp SINE Alu -11 302 1 2182 115 3 0 chr12 60732509 60732804 -83549685 - AluSc SINE Alu -13 296 1 1941 142 3 3 chr12 60733988 60734293 -83548196 + AluSx SINE Alu 1 305 0 288 242 70 39 chr12 60734654 60734782 -83547707 + L1ME LINE L1 5509 5640 -481 482 314 6 41 chr12 60734863 60735035 -83547454 - L2 LINE L2 -225 3088 2923 244 148 56 19 chr12 60735080 60735134 -83547355 - MLT2B1 LTR ERVL 0 520 465 219 139 0 0 chr12 60735134 60735170 -83547319 + (TG)n Simple_repeat Simple_repeat 2 37 0 1996 138 19 49 chr12 60735171 60735541 -83546948 - THE1B LTR MaLR 0 364 6 210 71 0 0 chr12 60735541 60735569 -83546920 + (CA)n Simple_repeat Simple_repeat 1 28 0 350 267 0 11 chr12 60735570 60735660 -83546829 - L1MC4 LINE L1 -1339 6703 6615 261 139 0 0 chr12 60735665 60735708 -83546781 + (TA)n Simple_repeat Simple_repeat 1 43 0 195 129 0 0 chr12 60735707 60735738 -83546751 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 2331 164 95 19 chr12 60735741 60736196 -83546293 - MLT2B1 LTR ERVL -21 533 2 242 275 29 0 chr12 60736197 60736266 -83546223 + L2 LINE L2 2318 2388 -926 265 268 41 0 chr12 60736274 60736371 -83546118 + L1MC4a LINE L1 5009 5109 -1037 334 235 67 34 chr12 60736459 60736578 -83545911 + L1MC4a LINE L1 5254 5376 -2432 353 235 17 8 chr12 60736587 60736706 -83545783 + L1MC4a LINE L1 5707 5826 -1982 1141 209 114 51 chr12 60736844 60737160 -83545329 + MER2 DNA MER2_type 4 339 -6 366 309 152 40 chr12 60737170 60737649 -83544840 + L1MC4a LINE L1 6083 6615 -1193 2379 258 90 50 chr12 60737688 60738835 -83543654 + L1MC4 LINE L1 6660 7852 -190 1054 229 53 8 chr12 60738883 60739128 -83543361 + MLT2D LTR ERVL 7 262 -152 489 229 93 54 chr12 60739175 60739433 -83543056 + HAL1 LINE L1 2128 2395 -112 2496 154 45 4 chr12 60739583 60740076 -83542413 - L1MA6 LINE L1 -5 6295 5783 422 302 64 45 chr12 60740453 60740655 -83541834 + MLT1J LTR MaLR 1 206 -305 5841 37 63 0 chr12 60740684 60741417 -83541072 - L1PA4 LINE L1 -1817 4329 3551 8734 33 3 1 chr12 60741417 60743242 -83539247 + L1PA4 LINE L1 4326 6154 -1 24 32 0 0 chr12 60743492 60743523 -83538966 + AT_rich Low_complexity Low_complexity 1 31 0 3390 192 55 49 chr12 60744120 60745233 -83537256 - L1MB7 LINE L1 -1 6681 5559 3336 71 5 5 chr12 60745231 60745669 -83536820 - L1PA8 LINE L1 -298 5874 5437 * 5572 98 18 49 chr12 60745697 60746550 -83535939 - LTR12 LTR ERV1 0 826 1 4293 112 5 0 chr12 60746550 60747158 -83535331 - HERV9 LTR ERV1 0 8399 7789 383 161 0 0 chr12 60747154 60747216 -83535273 - HERV9 LTR ERV1 -835 7564 7503 * 650 138 23 73 chr12 60747214 60747432 -83535057 - HERV17 LTR ERV1 -7726 900 694 * 1409 117 0 18 chr12 60747414 60747637 -83534852 - HERV17 LTR ERV1 -3425 4974 4756 * 12705 107 46 9 chr12 60747636 60750421 -83532068 - HERV17 LTR ERV1 -5427 2972 1 3602 86 226 0 chr12 60750421 60750982 -83531507 - LTR12 LTR ERV1 0 688 1 1840 88 0 0 chr12 60750983 60751234 -83531255 + L1PA8 LINE L1 5915 6165 -7 729 240 41 0 chr12 60751234 60751430 -83531059 - L1MB7 LINE L1 -1076 5568 5365 951 226 51 102 chr12 60751430 60751802 -83530687 + MLT1A1 LTR MaLR 1 353 -12 2090 241 101 32 chr12 60751807 60752692 -83529797 - L1MB7 LINE L1 -1276 5368 4423 370 188 0 0 chr12 60752712 60752781 -83529708 - MADE1 DNA Mariner 0 80 12 564 264 27 0 chr12 60752781 60752929 -83529560 - L1MB7 LINE L1 -2485 4159 4008 8834 31 4 0 chr12 60752960 60754790 -83527699 - L1PA2 LINE L1 -1 6154 4321 8592 38 0 0 chr12 60754792 60755828 -83526661 + L1PA2 LINE L1 3256 4291 -1855 231 254 0 0 chr12 60755992 60756063 -83526426 - L1MB7 LINE L1 -3256 3388 3318 * 435 208 125 7 chr12 60756061 60756205 -83526284 - L1MDa LINE L1 -4001 2539 2379 2515 266 64 43 chr12 60756213 60757678 -83524811 - L1MDa LINE L1 -4942 1598 17 263 314 22 7 chr12 60757690 60757827 -83524662 - L1MB7 LINE L1 -4163 2483 2345 4786 257 57 39 chr12 60757852 60759843 -83522646 - L1MB7 LINE L1 -4597 2049 15 378 244 84 8 chr12 60760271 60760390 -83522099 - MIR3 SINE MIR -44 164 37 247 323 26 71 chr12 60762177 60762332 -83520157 - MIR SINE MIR -112 150 3 2122 125 7 0 chr12 60762924 60763229 -83519260 - AluSx SINE Alu -4 308 2 186 71 0 0 chr12 60763422 60763450 -83519039 + (T)n Simple_repeat Simple_repeat 1 28 0 228 67 0 0 chr12 60764490 60764520 -83517969 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 314 305 30 74 chr12 60764532 60764735 -83517754 - L2 LINE L2 0 3313 3120 183 295 132 31 chr12 60764741 60764870 -83517619 + MIR SINE MIR 72 213 -49 245 205 62 116 chr12 60764960 60765072 -83517417 - L2 LINE L2 -12 3301 3196 26 0 0 0 chr12 60765505 60765531 -83516958 + AT_rich Low_complexity Low_complexity 1 26 0 1454 138 37 107 chr12 60765537 60765863 -83516626 + AluSx SINE Alu 3 305 -7 876 238 68 17 chr12 60765989 60766224 -83516265 + MIR SINE MIR 15 261 -1 264 250 15 0 chr12 60766484 60766552 -83515937 + MIR SINE MIR 96 164 -98 21 36 0 0 chr12 60766892 60766920 -83515569 + AT_rich Low_complexity Low_complexity 1 28 0 5281 94 29 5 chr12 60766920 60767683 -83514806 - L1PB1 LINE L1 -1 6150 5370 267 270 0 0 chr12 60767777 60767840 -83514649 - MIR SINE MIR 0 262 200 193 227 0 0 chr12 60767921 60767965 -83514524 - L2 LINE L2 0 3313 3270 22 0 0 0 chr12 60768476 60768498 -83513991 + AT_rich Low_complexity Low_complexity 1 22 0 190 241 35 35 chr12 60769308 60769366 -83513123 + L2 LINE L2 3256 3313 0 260 326 53 15 chr12 60770822 60770954 -83511535 - MIR SINE MIR -31 231 95 * 374 341 14 55 chr12 60770947 60771164 -83511325 + L2 LINE L2 717 924 -2390 300 239 56 0 chr12 60771171 60771242 -83511247 + U6 snRNA snRNA 31 105 -2 780 273 51 86 chr12 60771246 60771570 -83510919 + L1ME3A LINE L1 4520 4854 -1316 299 188 0 0 chr12 60771570 60771618 -83510871 + FRAM/FAM SINE Alu 22 69 -106 780 273 51 86 chr12 60771618 60771756 -83510733 + L1ME3A LINE L1 4854 4995 -1175 207 69 0 0 chr12 60771756 60771785 -83510704 + (CA)n Simple_repeat Simple_repeat 2 30 0 780 273 51 86 chr12 60771785 60772498 -83509991 + L1ME3A LINE L1 4995 5745 -425 1534 194 30 10 chr12 60772534 60772838 -83509651 - AluJo SINE Alu -2 310 1 433 156 33 0 chr12 60772841 60772931 -83509558 + L1ME3A LINE L1 5862 5954 -216 805 320 55 43 chr12 60773420 60773933 -83508556 - LTR33 LTR ERVL 0 521 3 22137 165 20 7 chr12 60774914 60777759 -83504730 + L1MA3 LINE L1 13 2965 -4600 536 0 16 0 chr12 60777759 60777823 -83504666 + (TATAG)n Simple_repeat Simple_repeat 1 65 0 22137 165 20 7 chr12 60777823 60780200 -83502289 + L1MA3 LINE L1 2965 5308 -2257 2487 57 9 0 chr12 60780200 60780515 -83501974 + L1PA8A LINE L1 5533 5850 -281 749 132 0 8 chr12 60780621 60780742 -83501747 + L1PA8 LINE L1 6053 6172 0 * 1375 180 19 12 chr12 60780729 60781024 -83501465 + L1MA3 LINE L1 5294 5598 -1967 3622 129 115 29 chr12 60781024 60782104 -83500385 - MER11A LTR ERVK 0 1236 1 6264 145 19 22 chr12 60782104 60783388 -83499101 + L1MA3 LINE L1 5593 6863 -861 1809 157 0 3 chr12 60783388 60783713 -83498776 + AluSx SINE Alu 1 324 0 6264 145 19 22 chr12 60783713 60784573 -83497916 + L1MA3 LINE L1 6863 7724 0 742 82 0 33 chr12 60784685 60784807 -83497682 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 1067 97 0 27 chr12 60784811 60784996 -83497493 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1260 184 0 59 chr12 60784996 60785267 -83497222 - AluJo SINE Alu -39 273 19 373 327 20 0 chr12 60786484 60786585 -83495904 + MIR3 SINE MIR 87 189 -19 2593 193 35 48 chr12 60787050 60787652 -83494837 - L1MB5 LINE L1 -36 6138 5545 2131 112 0 3 chr12 60787663 60787996 -83494493 - AluSx SINE Alu 0 332 1 220 258 16 32 chr12 60788052 60788114 -83494375 - MIR SINE MIR -124 138 78 205 338 15 0 chr12 60792373 60792441 -83490048 + MIR SINE MIR 18 86 -176 325 221 29 77 chr12 60793263 60793367 -83489122 - MIR SINE MIR -66 196 98 1953 141 6 16 chr12 60793370 60793494 -83488995 + AluSq SINE Alu 1 125 -188 293 0 0 26 chr12 60793494 60793532 -83488957 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1953 141 6 16 chr12 60793532 60793720 -83488769 + AluSq SINE Alu 125 310 -3 1036 207 184 29 chr12 60793940 60794283 -83488206 + MSTD LTR MaLR 1 396 0 23 0 0 0 chr12 60794793 60794816 -83487673 + AT_rich Low_complexity Low_complexity 1 23 0 227 247 11 0 chr12 60795101 60795190 -83487299 + GA-rich Low_complexity Low_complexity 2 91 0 387 264 66 0 chr12 60795259 60795365 -83487124 - MIR SINE MIR -80 182 70 226 271 16 62 chr12 60796245 60796374 -83486115 + L2 LINE L2 3100 3222 -91 2033 123 0 3 chr12 60796471 60796807 -83485682 + AluSq SINE Alu 1 335 0 781 275 35 23 chr12 60796820 60797040 -83485449 - MIR SINE MIR -43 219 3 2442 105 17 32 chr12 60797226 60797635 -83484854 + L1MA8 LINE L1 5867 6269 -22 620 336 0 9 chr12 60799687 60799901 -83482588 + MIR SINE MIR 52 262 0 185 362 0 76 chr12 60801413 60801518 -83480971 - L2 LINE L2 -222 3050 2954 1550 145 40 39 chr12 60801626 60802093 -83480396 - MER51A LTR ERV1 0 634 1 857 211 17 16 chr12 60802522 60802733 -83479756 + MER67A LTR ERV1 1 282 -261 1471 273 34 73 chr12 60802893 60804467 -83478022 + L1ME3 LINE L1 4316 5833 -337 363 288 44 64 chr12 60804498 60804748 -83477741 + L1ME3 LINE L1 5911 6155 -7 984 236 9 0 chr12 60806386 60806602 -83475887 - MER20 DNA MER1_type -1 218 1 29 0 0 0 chr12 60807215 60807244 -83475245 + AT_rich Low_complexity Low_complexity 1 29 0 539 281 77 29 chr12 60808037 60808283 -83474206 - MIR SINE MIR -3 259 2 24 0 0 0 chr12 60809045 60809069 -83473420 + AT_rich Low_complexity Low_complexity 1 24 0 399 296 175 21 chr12 60810097 60810413 -83472076 - L2 LINE L2 -254 3059 2699 301 231 45 52 chr12 60810424 60810558 -83471931 + L1MC4a LINE L1 5936 6068 -1740 460 204 91 109 chr12 60810590 60810864 -83471625 + L1MC4a LINE L1 6199 6467 -1341 23 0 0 0 chr12 60810864 60810887 -83471602 + AT_rich Low_complexity Low_complexity 1 23 0 355 372 61 5 chr12 60811099 60811295 -83471194 + MIR SINE MIR 1 207 -55 285 299 20 18 chr12 60812450 60812644 -83469845 + L1P4 LINE L1 5262 5458 -708 521 337 81 32 chr12 60812644 60812890 -83469599 + HERVL40 LTR ERVL 2896 3153 -2377 1569 243 40 5 chr12 60812916 60813291 -83469198 + HERVL40 LTR ERVL 3234 3621 -1909 1456 269 43 5 chr12 60813322 60813713 -83468776 + HERVL40 LTR ERVL 3901 4306 -1224 511 213 88 6 chr12 60813734 60813883 -83468606 + LTR40b LTR ERVL 263 439 -26 352 298 9 2 chr12 60815644 60815759 -83466730 + MIR SINE MIR 57 177 -31 1572 226 35 33 chr12 60816141 60816601 -83465888 + MER65C LTR ERV1 1 461 0 201 147 0 0 chr12 60818578 60818612 -83463877 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 1172 271 53 0 chr12 60818901 60819296 -83463193 - L1M4 LINE L1 -2479 3667 3252 205 398 53 35 chr12 60819821 60819992 -83462497 + L2 LINE L2 2807 2980 -333 455 344 51 31 chr12 60821325 60821581 -83460908 - L2 LINE L2 -204 3109 2849 548 322 84 4 chr12 60821698 60821925 -83460564 - L2 LINE L2 -363 2951 2707 1077 220 122 52 chr12 60822006 60822433 -83460056 - MSTB2 LTR MaLR 0 457 1 198 372 21 11 chr12 60822836 60822930 -83459559 - L2 LINE L2 0 3272 3178 450 101 0 0 chr12 60823752 60823821 -83458668 + (CA)n Simple_repeat Simple_repeat 1 69 0 3557 125 15 17 chr12 60824128 60824730 -83457759 - Tigger3b DNA MER2_type -488 743 143 22478 157 8 30 chr12 60824831 60829506 -83452983 - L1P3 LINE L1 -1328 5133 484 1587 204 136 25 chr12 60830597 60831038 -83451451 - LTR2B LTR ERV1 0 490 1 26 82 0 0 chr12 60831069 60831130 -83451359 + AT_rich Low_complexity Low_complexity 1 61 0 1036 122 0 7 chr12 60831427 60831575 -83450914 + AluSq/x SINE Alu 1 147 -165 447 141 0 0 chr12 60882194 60882272 -83400217 + (CA)n Simple_repeat Simple_repeat 2 79 0 508 351 41 8 chr12 60882364 60882609 -83399880 + MIR SINE MIR 8 260 -2 314 279 29 44 chr12 60882675 60882811 -83399678 - L1ME LINE L1 -318 5803 5670 1739 187 41 80 chr12 60882990 60883476 -83399013 + MLT1C LTR MaLR 1 467 0 543 69 0 0 chr12 60883746 60883818 -83398671 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 2644 99 16 3 chr12 60883999 60884382 -83398107 + L1PA15 LINE L1 5778 6165 0 935 226 44 40 chr12 60884729 60884955 -83397534 + AluJo SINE Alu 10 236 -76 846 231 5 14 chr12 60885038 60885259 -83397230 + L1M4 LINE L1 4456 4674 -1472 1092 236 69 9 chr12 60885262 60885610 -83396879 - L1M4 LINE L1 -2614 3532 3164 2766 217 40 3 chr12 60885612 60886263 -83396226 - L1 LINE L1 -1893 4253 3579 287 298 53 0 chr12 60886990 60887084 -83395405 - L2 LINE L2 -1 3312 3214 269 212 61 0 chr12 60887767 60887866 -83394623 + A-rich Low_complexity Low_complexity 2 106 0 21 36 0 0 chr12 60888084 60888112 -83394377 + AT_rich Low_complexity Low_complexity 1 28 0 259 302 208 0 chr12 60888353 60888512 -83393977 + MIR SINE MIR 71 262 0 194 111 0 0 chr12 60888669 60888696 -83393793 - L2 LINE L2 -16 3256 3230 447 318 88 0 chr12 60888746 60888938 -83393551 + L2 LINE L2 2331 2539 -775 1457 242 63 29 chr12 60888951 60889331 -83393158 + MLT1C LTR MaLR 6 405 -62 2376 58 0 19 chr12 60889331 60889643 -83392846 - AluY SINE Alu -5 306 1 1457 242 63 29 chr12 60889643 60889709 -83392780 + MLT1C LTR MaLR 405 467 0 374 322 82 79 chr12 60890467 60890596 -83391893 + L2 LINE L2 2667 2794 -519 685 116 0 18 chr12 60890596 60890708 -83391781 - L1PA5 LINE L1 -2 6152 6043 374 322 82 79 chr12 60890708 60891024 -83391465 + L2 LINE L2 2794 3137 -176 1890 155 0 0 chr12 60891024 60891314 -83391175 - AluSx SINE Alu -22 290 1 374 322 82 79 chr12 60891314 60891478 -83391011 + L2 LINE L2 3137 3299 -14 694 202 171 21 chr12 60892380 60892603 -83389886 - L1M3 LINE L1 -527 5657 5432 21 0 0 0 chr12 60892615 60892636 -83389853 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 60893786 60893808 -83388681 + AT_rich Low_complexity Low_complexity 1 22 0 316 286 71 16 chr12 60893996 60894122 -83388367 - MLT1I LTR MaLR -3 406 274 27 0 0 0 chr12 60894501 60894528 -83387961 + AT_rich Low_complexity Low_complexity 1 27 0 330 291 9 114 chr12 60894811 60895031 -83387458 - MIR SINE MIR -13 249 53 1888 140 21 0 chr12 60895787 60896073 -83386416 - AluSx SINE Alu -17 295 4 2106 168 50 10 chr12 60896839 60897256 -83385233 + Tigger2a DNA MER2_type 1 434 0 1523 144 113 0 chr12 60897862 60898119 -83384370 - AluJb SINE Alu -26 286 1 663 253 8 96 chr12 60898818 60899067 -83383422 - LTR16A1 LTR ERVL -216 241 15 306 183 58 25 chr12 60899170 60899290 -83383199 + (TA)n Simple_repeat Simple_repeat 1 124 0 235 298 66 88 chr12 60899359 60899540 -83382949 - L3 LINE CR1 -899 678 502 398 338 64 11 chr12 60899644 60900042 -83382447 - MLT1L LTR MaLR -52 563 129 2287 100 0 0 chr12 60900543 60900844 -83381645 - AluSg SINE Alu -9 301 1 429 208 73 0 chr12 60901174 60901270 -83381219 + Tigger5 DNA MER2_type 2221 2323 0 1100 296 27 61 chr12 60901296 60901807 -83380682 - L1MEc LINE L1 -5866 530 37 6856 146 19 19 chr12 60902287 60903476 -83379013 + HSMAR2 DNA Mariner 3 1191 -111 10873 145 24 52 chr12 60903591 60906419 -83376070 - L1P3 LINE L1 -3605 2856 6 220 365 0 15 chr12 60907575 60907712 -83374777 + A-rich Low_complexity Low_complexity 4 138 0 231 238 36 95 chr12 60907744 60907828 -83374661 - MIR SINE MIR -157 105 27 289 276 0 13 chr12 60908501 60908577 -83373912 + LTR33A LTR ERVL 441 515 -8 1689 176 32 0 chr12 60909216 60909500 -83372989 - AluSg SINE Alu -17 293 1 8184 108 4 8 chr12 60909523 60910804 -83371685 - L1P LINE L1 -2210 3936 2661 349 220 42 42 chr12 60911476 60911594 -83370895 - L1MC5 LINE L1 -30 7931 7814 824 280 109 16 chr12 60911603 60911907 -83370582 - MLT1F LTR MaLR -210 332 1 628 207 156 17 chr12 60911957 60912194 -83370295 - L1MC5 LINE L1 -301 7660 7391 433 208 73 88 chr12 60912208 60912400 -83370089 - L1MC5 LINE L1 -899 7062 6874 769 323 28 0 chr12 60913187 60913438 -83369051 - MIR SINE MIR 0 262 5 1881 239 100 11 chr12 60913544 60914059 -83368430 + MLT1F1 LTR MaLR 1 593 0 8925 69 18 3 chr12 60914165 60915597 -83366892 + L1P2 LINE L1 4161 5604 -550 27 49 0 0 chr12 60915733 60915774 -83366715 + AT_rich Low_complexity Low_complexity 1 41 0 33 25 0 0 chr12 60916058 60916098 -83366391 + AT_rich Low_complexity Low_complexity 1 40 0 274 253 24 12 chr12 60916154 60916237 -83366252 + L1MC3 LINE L1 6735 6818 -967 230 305 0 0 chr12 60916743 60916802 -83365687 + MIR SINE MIR 31 89 -119 713 127 16 8 chr12 60917647 60917773 -83364716 + L1MA8 LINE L1 6165 6291 0 243 191 29 44 chr12 60918188 60918256 -83364233 + L2 LINE L2 3242 3308 -5 209 319 69 14 chr12 60918234 60918306 -83364183 - L2 LINE L2 -10 3262 3187 * 582 334 44 83 chr12 60918619 60919074 -83363415 + L2 LINE L2 2836 3272 0 380 399 24 5 chr12 60919226 60919439 -83363050 - L2 LINE L2 -609 2705 2489 2986 184 80 7 chr12 60919462 60920113 -83362376 - L1MB3 LINE L1 0 6174 5460 374 322 107 78 chr12 60920255 60920628 -83361861 - L3 LINE CR1 -37 1540 1157 603 259 170 9 chr12 60922143 60922367 -83360122 - MIR SINE MIR -2 260 1 1981 108 2 52 chr12 60922492 60923008 -83359481 - L1PB1 LINE L1 -50 6101 5528 1550 243 44 40 chr12 60923045 60923544 -83358945 - MLT1D LTR MaLR 0 505 5 11460 118 2 5 chr12 60924341 60926083 -83356406 - L1P LINE L1 -1001 5145 3409 265 329 91 21 chr12 60926414 60926557 -83355932 + MIR3 SINE MIR 34 186 -22 208 244 22 0 chr12 60927977 60928022 -83354467 - L2 LINE L2 0 3313 3268 268 221 0 32 chr12 60928077 60928172 -83354317 + (CATATA)n Simple_repeat Simple_repeat 5 96 0 245 333 135 35 chr12 60928211 60928493 -83353996 - L2 LINE L2 -189 3124 2815 1642 181 120 30 chr12 60928545 60928938 -83353551 - MSTA LTR MaLR 0 428 1 1368 136 5 5 chr12 60928938 60929159 -83353330 - MSTA-int LTR MaLR 0 1580 1360 1783 170 7 3 chr12 60929722 60930028 -83352461 - AluSx SINE Alu -5 307 1 6457 59 19 0 chr12 60931102 60932077 -83350412 - L1PA7 LINE L1 -13 6141 5143 204 317 117 4 chr12 60932842 60933021 -83349468 - MIR3 SINE MIR -56 206 5 21 0 0 0 chr12 60933673 60933694 -83348795 + AT_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chr12 60934279 60934306 -83348183 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr12 60934363 60934384 -83348105 + AT_rich Low_complexity Low_complexity 1 21 0 240 317 25 54 chr12 60935586 60935721 -83346768 - MIR SINE MIR -58 150 57 697 269 105 0 chr12 60935967 60936186 -83346303 - MIR SINE MIR -10 252 11 22 35 0 0 chr12 60937422 60937451 -83345038 + AT_rich Low_complexity Low_complexity 1 29 0 7969 53 1 0 chr12 60938215 60939516 -83342973 + L1P3 LINE L1 4395 5697 -475 6560 159 6 52 chr12 60939649 60940914 -83341575 - THE1-int LTR MaLR -371 1209 3 2296 233 46 53 chr12 60941079 60942061 -83340428 - Charlie2 DNA MER1_type -32 2830 1856 835 241 52 76 chr12 60942053 60942381 -83340108 - Charlie2 DNA MER1_type -2452 330 11 * 1657 172 18 0 chr12 60942423 60942702 -83339787 + AluJo SINE Alu 13 296 -16 197 273 10 111 chr12 60942703 60942802 -83339687 - MER5A DNA MER1_type -63 126 38 564 287 46 0 chr12 60942867 60943041 -83339448 - MIR SINE MIR 0 262 81 25 0 0 0 chr12 60943191 60943216 -83339273 + AT_rich Low_complexity Low_complexity 1 25 0 454 253 0 0 chr12 60943216 60943303 -83339186 - MER5A DNA MER1_type -94 95 9 496 229 144 32 chr12 60943319 60943507 -83338982 - MER3 DNA MER1_type 0 209 1 299 336 154 39 chr12 60943620 60943900 -83338589 - L2 LINE L2 -828 2486 2175 1329 203 89 3 chr12 60943981 60944306 -83338183 - L1MB5 LINE L1 -8 6166 5814 * 5311 87 35 9 chr12 60944301 60945081 -83337408 - L1PA8A LINE L1 -1 6130 5331 1404 139 5 0 chr12 60945090 60945305 -83337184 - AluSp SINE Alu -15 298 83 8206 139 13 0 chr12 60945305 60946637 -83335852 - L1PA8A LINE L1 -815 5331 3983 1696 92 0 13 chr12 60946637 60946865 -83335624 - AluSg/x SINE Alu -18 294 70 2022 183 13 2 chr12 60946865 60947259 -83335230 + L1P LINE L1 2678 3075 -3071 609 67 0 44 chr12 60947416 60947506 -83334983 - AluSq SINE Alu -158 155 70 2333 178 14 0 chr12 60947506 60947945 -83334544 + L1P LINE L1 2678 3122 -3024 494 91 0 0 chr12 60947945 60948011 -83334478 - AluSq SINE Alu -247 66 1 5195 149 30 13 chr12 60948011 60949034 -83333455 - L1PA8A LINE L1 -2150 3996 2956 7563 27 1 1 chr12 60949134 60950783 -83331706 + L1PA3 LINE L1 4503 6153 -2 2615 106 19 0 chr12 60951006 60951374 -83331115 + THE1C LTR MaLR 1 375 0 634 175 58 73 chr12 60951575 60951780 -83330709 - MER34 LTR ERV1 0 542 370 299 161 0 16 chr12 60951833 60951895 -83330594 + GA-rich Low_complexity Low_complexity 2 62 0 621 265 42 81 chr12 60951895 60952180 -83330309 - MER34 LTR ERV1 -229 478 1 203 359 29 27 chr12 60952536 60952685 -83329804 - MIR3 SINE MIR -42 166 16 405 123 0 0 chr12 60953063 60953128 -83329361 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 1155 222 93 11 chr12 60953582 60953861 -83328628 - AluJo SINE Alu 0 302 1 2020 145 0 14 chr12 60953947 60954244 -83328245 - AluSx SINE Alu -18 294 2 455 251 99 52 chr12 60955634 60955845 -83326644 - HAL1 LINE L1 -1341 1166 946 357 308 46 85 chr12 60956257 60956517 -83325972 - HAL1 LINE L1 -2257 250 1 194 349 106 15 chr12 60956696 60956894 -83325595 - L3 LINE CR1 -38 1539 1324 3529 68 2 0 chr12 60957377 60957820 -83324669 - MLT2A1 LTR ERVL 0 444 1 24 77 0 0 chr12 60958087 60958139 -83324350 + AT_rich Low_complexity Low_complexity 1 52 0 340 225 70 80 chr12 60958233 60958433 -83324056 - L1MC4a LINE L1 -1930 5878 5681 26 74 0 0 chr12 60959062 60959116 -83323373 + AT_rich Low_complexity Low_complexity 1 54 0 245 213 16 0 chr12 60959166 60959227 -83323262 + (CAAA)n Simple_repeat Simple_repeat 3 64 0 1979 185 74 33 chr12 60959532 60960174 -83322315 - MER39 LTR ERV1 0 707 1 321 239 7 87 chr12 60960599 60960737 -83321752 - HAL1 LINE L1 -623 1884 1758 687 240 31 92 chr12 60960783 60961075 -83321414 - HAL1 LINE L1 -750 1757 1484 2400 78 0 0 chr12 60963407 60963703 -83318786 - AluY SINE Alu -15 296 1 246 174 22 0 chr12 60963877 60963923 -83318566 - MIR SINE MIR -82 180 134 1826 161 146 13 chr12 60963941 60964319 -83318170 - MSTA LTR MaLR 0 428 1 300 309 79 33 chr12 60964440 60964592 -83317897 - MIR SINE MIR -70 192 34 24 85 0 0 chr12 60965117 60965176 -83317313 + AT_rich Low_complexity Low_complexity 1 59 0 2121 143 33 30 chr12 60965189 60965552 -83316937 + THE1B LTR MaLR 1 364 0 2343 92 0 0 chr12 60965582 60965886 -83316603 - AluY SINE Alu -7 304 1 182 333 202 0 chr12 60966047 60966131 -83316358 - L2 LINE L2 -1035 2279 2179 22 0 0 0 chr12 60966722 60966744 -83315745 + AT_rich Low_complexity Low_complexity 1 22 0 228 317 41 69 chr12 60967238 60967383 -83315106 - L2 LINE L2 -2 3311 3171 21 36 0 0 chr12 60968565 60968593 -83313896 + AT_rich Low_complexity Low_complexity 1 28 0 956 333 144 35 chr12 60968964 60969152 -83313337 - L2 LINE L2 -95 3218 3052 5196 76 10 6 chr12 60969152 60969836 -83312653 + LTR12 LTR ERV1 1 687 -1 956 333 144 35 chr12 60969836 60970141 -83312348 - L2 LINE L2 -261 3052 2782 2147 122 7 0 chr12 60970141 60970444 -83312045 - AluSq SINE Alu -8 305 1 956 333 144 35 chr12 60970444 60971088 -83311401 - L2 LINE L2 -531 2782 1940 669 143 9 9 chr12 60971441 60971553 -83310936 - MER3 DNA MER1_type -97 112 1 388 325 170 25 chr12 60971814 60972274 -83310215 - L2 LINE L2 -89 3224 2691 499 303 24 18 chr12 60974787 60974952 -83307537 + MIR SINE MIR 1 166 -96 26 0 0 0 chr12 60974983 60975009 -83307480 + AT_rich Low_complexity Low_complexity 1 26 0 841 223 148 18 chr12 60976046 60976275 -83306214 - MIR SINE MIR 0 262 4 249 302 163 18 chr12 60976338 60977079 -83305410 + L1MC4a LINE L1 4117 4965 -1181 205 200 0 0 chr12 60977155 60977195 -83305294 + A-rich Low_complexity Low_complexity 1 40 0 668 284 62 61 chr12 60977362 60977632 -83304857 + L1MC4a LINE L1 5280 5240 -1051 1826 175 3 17 chr12 60977632 60977929 -83304560 - AluJb SINE Alu -19 293 1 668 284 62 61 chr12 60977929 60978236 -83304253 + L1MC4a LINE L1 5239 5544 -747 240 233 82 41 chr12 60979473 60979546 -83302943 + MIR SINE MIR 15 90 -172 1262 138 0 0 chr12 60979553 60979734 -83302755 - AluSp SINE Alu -3 310 130 724 167 87 1 chr12 60979734 60979858 -83302631 + THE1-int LTR MaLR 1220 1332 -371 2037 152 0 0 chr12 60979858 60980154 -83302335 - AluSx SINE Alu -16 296 1 724 167 87 1 chr12 60980154 60980166 -83302323 + THE1-int LTR MaLR 1332 1475 -228 1835 154 78 9 chr12 60980223 60980554 -83301935 - MLT1A1 LTR MaLR 0 365 12 211 290 81 0 chr12 60980564 60980626 -83301863 + MIR SINE MIR 178 244 -18 381 36 36 0 chr12 60980634 60980689 -83301800 - HsTC2 DNA Tc2 -4 1894 1838 1904 148 48 34 chr12 60981003 60981361 -83301128 - THE1B LTR MaLR 0 364 2 10439 109 15 9 chr12 60981362 60981598 -83300891 - THE1B-int LTR MaLR 0 1580 1347 2087 141 0 0 chr12 60981598 60981896 -83300593 + AluSx SINE Alu 1 298 -14 10439 109 15 9 chr12 60981896 60983149 -83299340 - THE1B-int LTR MaLR -233 1347 82 1675 162 45 98 chr12 60983149 60983526 -83298963 - THE1B LTR MaLR -7 357 1 273 276 75 93 chr12 60983527 60983806 -83298683 - L3 LINE CR1 -88 1489 1216 520 310 34 89 chr12 60984135 60984493 -83297996 - L3 LINE CR1 -440 1137 800 5815 106 38 2 chr12 60984904 60985821 -83296668 + L1PB2 LINE L1 5203 6150 -1 23 0 0 0 chr12 60985821 60985844 -83296645 + AT_rich Low_complexity Low_complexity 1 23 0 570 279 12 6 chr12 60986539 60986711 -83295778 + MER46C DNA MER2_type 165 337 -1 578 299 112 29 chr12 60987687 60987965 -83294524 + MLT1J1 LTR MaLR 85 385 -61 1194 211 55 35 chr12 60988519 60988808 -83293681 + AluJo SINE Alu 2 296 -6 251 227 152 44 chr12 60989852 60990012 -83292477 + MIR SINE MIR 2 168 -40 222 105 0 0 chr12 60990611 60990649 -83291840 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 2704 22 0 6 chr12 60993373 60993686 -83288803 + AluYa5 SINE Alu 1 311 0 22 56 0 0 chr12 60993714 60993750 -83288739 + AT_rich Low_complexity Low_complexity 1 36 0 1324 184 13 7 chr12 60994517 60994826 -83287663 + AluYa5 SINE Alu 1 311 0 22 56 0 0 chr12 60994856 60994892 -83287597 + AT_rich Low_complexity Low_complexity 1 36 0 3530 76 17 2 chr12 60996941 60997416 -83285073 + L1PA8 LINE L1 5689 6170 -2 21 36 0 0 chr12 60997670 60997698 -83284791 + AT_rich Low_complexity Low_complexity 1 28 0 1479 275 146 14 chr12 60998547 60999353 -83283136 + L1MC4a LINE L1 5451 6363 -1445 571 257 11 83 chr12 60999594 60999859 -83282630 + L1MC5 LINE L1 6716 6961 -1000 453 262 226 0 chr12 60999935 61000103 -83282386 + MLT1G1 LTR MaLR 1 206 -389 373 233 91 39 chr12 61000071 61000359 -83282130 + MLT1F LTR MaLR 126 541 -54 * 1673 193 24 0 chr12 61000359 61000654 -83281835 - AluJo SINE Alu -9 303 2 373 233 91 39 chr12 61000654 61000712 -83281777 + MLT1F LTR MaLR 541 595 0 265 217 294 14 chr12 61000716 61000859 -83281630 + L1MC5 LINE L1 7032 7214 -747 2072 113 87 29 chr12 61000860 61001204 -83281285 - THE1B LTR MaLR 0 364 1 3333 122 56 17 chr12 61001204 61001737 -83280752 - THE1B-int LTR MaLR 0 1580 1027 3015 92 5 5 chr12 61001715 61002141 -83280348 - THE1B-int LTR MaLR -1154 426 1 * 2265 135 5 27 chr12 61002141 61002512 -83279977 - THE1B LTR MaLR 0 364 2 10402 108 17 10 chr12 61002513 61002749 -83279740 - THE1B-int LTR MaLR 0 1580 1347 2087 141 0 0 chr12 61002749 61003047 -83279442 + AluSx SINE Alu 1 298 -14 10402 108 17 10 chr12 61003047 61004299 -83278190 - THE1B-int LTR MaLR -233 1347 82 1675 162 45 98 chr12 61004299 61004676 -83277813 - THE1B LTR MaLR -7 357 1 252 284 92 72 chr12 61004677 61004927 -83277562 - L3 LINE CR1 -88 1489 1235 13085 158 23 3 chr12 61005053 61007400 -83275089 - L1PA13 LINE L1 -2346 4451 2058 455 153 0 0 chr12 61008222 61008307 -83274182 - L1PA13 LINE L1 -4667 2120 2036 22 0 0 0 chr12 61010158 61010180 -83272309 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr12 61011023 61011055 -83271434 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr12 61012228 61012252 -83270237 + AT_rich Low_complexity Low_complexity 1 24 0 238 257 0 43 chr12 61012957 61013027 -83269462 + MER5A DNA MER1_type 38 104 -85 369 301 130 16 chr12 61013037 61013283 -83269206 + L1ME LINE L1 4139 4412 -1734 1073 188 72 75 chr12 61013283 61013602 -83268887 - MLT1B LTR MaLR -69 321 4 314 205 11 116 chr12 61013609 61013799 -83268690 + L1ME LINE L1 4484 4653 -1493 726 280 66 71 chr12 61013836 61014985 -83267504 + L1ME LINE L1 4639 5783 -387 571 221 23 93 chr12 61016999 61017171 -83265318 - MER52A LTR ERV1 -525 1230 1071 798 200 11 185 chr12 61017175 61017462 -83265027 - LTR28 LTR ERV1 -841 179 1 24 0 0 0 chr12 61017484 61017508 -83264981 + AT_rich Low_complexity Low_complexity 1 24 0 646 270 169 43 chr12 61018504 61018919 -83263570 + MLT1L LTR MaLR 149 615 0 375 305 222 5 chr12 61019015 61019218 -83263271 + L3 LINE CR1 1330 1576 -1 22 0 0 0 chr12 61020798 61020820 -83261669 + AT_rich Low_complexity Low_complexity 1 22 0 1695 189 0 3 chr12 61020973 61021301 -83261188 - AluSx SINE Alu 0 327 1 193 77 0 0 chr12 61021927 61021953 -83260536 - L2 LINE L2 -1398 1916 1891 335 310 69 33 chr12 61022806 61023051 -83259438 - L1MC/D LINE L1 -2163 5645 5392 43207 43 3 4 chr12 61023051 61026241 -83256248 + L1PA3 LINE L1 2 3185 -2970 2505 49 0 7 chr12 61026241 61026547 -83255942 + AluY SINE Alu 1 304 -7 43207 43 3 4 chr12 61026547 61029515 -83252974 + L1PA3 LINE L1 3185 6155 0 32 26 0 0 chr12 61031449 61031488 -83251001 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr12 61033432 61033454 -83249035 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 61034218 61034246 -83248243 + AT_rich Low_complexity Low_complexity 1 28 0 381 271 33 53 chr12 61034449 61034600 -83247889 + MIR SINE MIR 103 250 -12 180 0 0 0 chr12 61034794 61034814 -83247675 + (TG)n Simple_repeat Simple_repeat 1 20 0 269 349 72 26 chr12 61035018 61035170 -83247319 + L2 LINE L2 2916 3074 -198 1818 222 88 49 chr12 61035209 61035847 -83246642 - MLT1E2 LTR MaLR -8 618 1 337 226 0 32 chr12 61035958 61036051 -83246438 - MIR SINE MIR -90 172 83 200 324 88 0 chr12 61036096 61036164 -83246325 - MIR SINE MIR -188 74 1 2078 126 3 0 chr12 61036268 61036573 -83245916 - AluSx SINE Alu 0 306 1 342 354 101 0 chr12 61037421 61037579 -83244910 - MIR SINE MIR -10 252 79 626 159 28 28 chr12 61038549 61038694 -83243795 - L1MB7 LINE L1 -9 6175 6031 1672 174 13 3 chr12 61038697 61039008 -83243481 + L1MC1 LINE L1 6005 6318 -15 383 263 8 8 chr12 61039028 61039146 -83243343 - L1MB8 LINE L1 -140 6038 5921 1513 198 7 11 chr12 61039194 61039503 -83242986 + AluJb SINE Alu 1 308 0 27 29 0 0 chr12 61040195 61040229 -83242260 + AT_rich Low_complexity Low_complexity 1 34 0 1004 202 166 4 chr12 61040735 61040982 -83241507 + AluJo SINE Alu 2 288 -14 1496 259 17 73 chr12 61041020 61041827 -83240662 - L1M4 LINE L1 -1938 4208 3447 882 298 0 0 chr12 61042115 61042330 -83240159 - LTR16A LTR ERVL 0 450 236 32 57 0 0 chr12 61042341 61042394 -83240095 + AT_rich Low_complexity Low_complexity 1 53 0 233 329 65 7 chr12 61042406 61042561 -83239928 + L1M4 LINE L1 4877 5040 -1106 13305 202 48 25 chr12 61042588 61047356 -83235133 - L1MA7 LINE L1 -2 7708 2835 351 348 27 0 chr12 61047359 61047471 -83235018 - LTR16A LTR ERVL -209 241 127 32 26 0 0 chr12 61049509 61049548 -83232941 + AT_rich Low_complexity Low_complexity 1 39 0 3771 53 0 0 chr12 61049549 61050018 -83232471 - L1PA5 LINE L1 -4 6150 5682 38 0 0 0 chr12 61050599 61050637 -83231852 + AT_rich Low_complexity Low_complexity 1 38 0 2148 124 7 0 chr12 61052487 61052786 -83229703 - AluSx SINE Alu -11 301 1 1895 235 82 21 chr12 61052995 61053480 -83229009 - L1PA12 LINE L1 -7066 515 1 22 0 0 0 chr12 61053585 61053607 -83228882 + AT_rich Low_complexity Low_complexity 1 22 0 255 189 0 0 chr12 61053620 61053673 -83228816 + (AGCTG)n Simple_repeat Simple_repeat 1 53 0 218 186 83 19 chr12 61053708 61053770 -83228719 - MIR SINE MIR -51 157 85 2271 97 0 7 chr12 61054171 61054470 -83228019 + AluSp SINE Alu 1 297 -16 805 253 192 15 chr12 61054472 61054947 -83227542 - L1MC5 LINE L1 -48 7913 7355 1996 143 49 29 chr12 61055028 61055378 -83227111 + THE1B LTR MaLR 8 364 0 3015 92 5 5 chr12 61055378 61055804 -83226685 + THE1B-int LTR MaLR 1 426 -1154 * 3220 122 58 17 chr12 61055782 61056300 -83226189 + THE1B-int LTR MaLR 1027 1565 -15 21 0 0 0 chr12 61057158 61057179 -83225310 + AT_rich Low_complexity Low_complexity 1 21 0 282 73 0 0 chr12 61057314 61057355 -83225134 + (TG)n Simple_repeat Simple_repeat 2 42 0 306 165 58 0 chr12 61057408 61057511 -83224978 + (TA)n Simple_repeat Simple_repeat 2 110 0 186 327 106 29 chr12 61058470 61058574 -83223915 + L2 LINE L2 3094 3205 -67 186 103 0 0 chr12 61059746 61059775 -83222714 + (CA)n Simple_repeat Simple_repeat 2 30 0 513 309 22 11 chr12 61060963 61061141 -83221348 + MIR SINE MIR 50 229 -33 315 346 8 31 chr12 61061212 61061342 -83221147 - MIR3 SINE MIR -48 160 34 1580 181 7 0 chr12 61061480 61061761 -83220728 + AluSx SINE Alu 5 287 -25 185 265 20 0 chr12 61063558 61063607 -83218882 + L2 LINE L2 3211 3260 -12 521 141 61 0 chr12 61064216 61064315 -83218174 + L1MB7 LINE L1 6064 6168 -16 262 237 17 0 chr12 61064317 61064435 -83218054 + (TA)n Simple_repeat Simple_repeat 2 121 0 1687 182 3 10 chr12 61064988 61065284 -83217205 - AluJo SINE Alu -17 295 2 200 311 47 28 chr12 61066118 61066224 -83216265 - L2 LINE L2 -41 3272 3165 859 281 46 34 chr12 61066348 61066759 -83215730 + LTR16C LTR ERVL 1 490 -1 4215 133 102 33 chr12 61067377 61068422 -83214067 + MER41-int LTR ERV1 127 1328 -4618 460 359 47 0 chr12 61068860 61069030 -83213459 - MIR3 SINE MIR -1 207 30 21 0 0 0 chr12 61069373 61069394 -83213095 + AT_rich Low_complexity Low_complexity 1 21 0 1261 117 0 0 chr12 61071399 61071596 -83210893 + L1MA7 LINE L1 6091 6287 -4 1092 209 130 30 chr12 61072525 61072856 -83209633 - Looper DNA T2_type -264 1294 931 1310 230 0 24 chr12 61072905 61073192 -83209297 - AluJb SINE Alu -32 280 1 2030 128 0 10 chr12 61073926 61074248 -83208241 + AluSx SINE Alu 1 319 0 23 68 0 0 chr12 61074251 61074295 -83208194 + AT_rich Low_complexity Low_complexity 1 44 0 1420 189 131 0 chr12 61074328 61074634 -83207855 + MER7A DNA MER2_type 3 346 0 431 298 83 72 chr12 61075418 61075572 -83206917 - L1ME4a LINE L1 -2 6119 5968 182 37 37 0 chr12 61075572 61075599 -83206890 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 431 298 83 72 chr12 61075599 61075881 -83206608 - L1ME4a LINE L1 -153 5968 5691 2004 148 137 8 chr12 61075881 61076260 -83206229 + MSTA LTR MaLR 1 428 0 8702 153 17 42 chr12 61076262 61077881 -83204608 + MSTA-int LTR MaLR 3 1580 0 1915 155 144 3 chr12 61077881 61078255 -83204234 + MSTA LTR MaLR 1 427 -1 431 298 83 72 chr12 61078255 61078329 -83204160 - L1ME4a LINE L1 -429 5692 5598 2380 229 17 42 chr12 61078388 61079147 -83203342 + Charlie1 DNA MER1_type 2015 2754 -7 281 283 18 26 chr12 61080726 61080839 -83201650 + CT-rich Low_complexity Low_complexity 3 114 0 261 0 0 0 chr12 61081073 61081102 -83201387 + (CA)n Simple_repeat Simple_repeat 1 29 0 29 0 0 0 chr12 61081337 61081366 -83201123 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr12 61081734 61081770 -83200719 + AT_rich Low_complexity Low_complexity 1 36 0 2492 132 53 47 chr12 61082322 61082660 -83199829 + MER101 LTR ERV1 2 345 -129 2376 74 0 10 chr12 61082660 61082969 -83199520 + AluY SINE Alu 1 306 -5 2492 132 53 47 chr12 61082969 61083100 -83199389 + MER101 LTR ERV1 345 474 0 29 0 0 0 chr12 61083738 61083767 -83198722 + AT_rich Low_complexity Low_complexity 1 29 0 414 0 0 0 chr12 61083970 61084016 -83198473 + (TA)n Simple_repeat Simple_repeat 2 47 0 1820 138 190 11 chr12 61084493 61084856 -83197633 + MSTA LTR MaLR 1 428 0 1807 264 74 28 chr12 61084857 61085547 -83196942 - L1ME1 LINE L1 -6 6160 5458 385 310 92 65 chr12 61085539 61085800 -83196689 - L1ME LINE L1 -5564 506 239 * 1905 146 50 44 chr12 61085960 61086322 -83196167 + THE1B LTR MaLR 1 364 0 11385 110 1 4 chr12 61086322 61087907 -83194582 + THE1B-int LTR MaLR 1 1580 0 2381 112 19 22 chr12 61087907 61088272 -83194217 + THE1B LTR MaLR 1 364 0 47 19 0 0 chr12 61088534 61088588 -83193901 + AT_rich Low_complexity Low_complexity 1 54 0 244 222 0 0 chr12 61089458 61089503 -83192986 - L2 LINE L2 -10 3303 3259 219 324 28 46 chr12 61089621 61089729 -83192760 - L2 LINE L2 -224 3048 2943 248 406 41 0 chr12 61089851 61089974 -83192515 - L2 LINE L2 -608 2706 2579 183 156 0 0 chr12 61090007 61090039 -83192450 + GA-rich Low_complexity Low_complexity 2 33 0 293 203 29 29 chr12 61090060 61090129 -83192360 - MIR3 SINE MIR -48 160 92 242 222 83 104 chr12 61092104 61092248 -83190241 - MLT1A1 LTR MaLR -16 533 393 2674 136 41 0 chr12 61092276 61092687 -83189802 + MSTA LTR MaLR 1 428 0 4439 134 26 73 chr12 61092762 61093677 -83188812 - MER4D LTR ERV1 0 872 1 1197 98 0 0 chr12 61093847 61094021 -83188468 - MER7A DNA MER2_type -109 237 66 244 286 127 8 chr12 61094131 61094257 -83188232 + LTR50 LTR ERVL 67 207 -588 314 308 65 30 chr12 61094345 61094438 -83188051 + LTR50 LTR ERVL 471 574 -221 3055 140 32 60 chr12 61094438 61095068 -83187421 - LTR9 LTR ERV1 0 612 1 314 308 65 30 chr12 61095068 61095143 -83187346 + LTR50 LTR ERVL 574 645 -150 684 204 11 33 chr12 61095203 61095384 -83187105 + MER5B DNA MER1_type 1 177 -1 208 231 19 19 chr12 61096619 61096671 -83185818 - L2 LINE L2 0 3272 3221 316 144 14 173 chr12 61096936 61097006 -83185483 - LTR41 LTR ERVL -11 762 723 1809 157 24 14 chr12 61097006 61097300 -83185189 - AluJb SINE Alu -15 297 1 316 144 14 173 chr12 61097300 61097363 -83185126 - LTR41 LTR ERVL -50 723 651 643 270 0 6 chr12 61097363 61097537 -83184952 - MER58B DNA MER1_type -1 340 168 785 211 22 11 chr12 61097989 61098174 -83184315 - LTR41 LTR ERVL -585 188 2 734 217 90 16 chr12 61099005 61099194 -83183295 - MIR SINE MIR -31 231 29 1085 241 39 45 chr12 61099661 61100018 -83182471 - MLT1A1 LTR MaLR -10 355 1 618 321 60 20 chr12 61100984 61101236 -83181253 - MIR SINE MIR 0 262 1 430 323 117 37 chr12 61101264 61101564 -83180925 + L2 LINE L2 2384 2707 -607 369 285 108 83 chr12 61101657 61102210 -83180279 + L2 LINE L2 2703 3265 -7 1713 191 7 0 chr12 61102210 61102498 -83179991 + AluJb SINE Alu 1 290 -22 308 284 32 0 chr12 61102604 61102699 -83179790 + L2 LINE L2 2157 2254 -1060 219 214 71 0 chr12 61102713 61102755 -83179734 - MER91C DNA MER1_type -10 180 136 7422 82 10 12 chr12 61102797 61103768 -83178721 - LTR5 LTR ERVK 0 969 1 228 135 0 0 chr12 61103823 61103860 -83178629 + (CA)n Simple_repeat Simple_repeat 1 37 0 221 219 42 104 chr12 61104189 61104285 -83178204 - MER91C DNA MER1_type -37 103 14 940 179 25 15 chr12 61104705 61104901 -83177588 + L1MA7 LINE L1 6027 6224 -67 2145 91 50 14 chr12 61104901 61105264 -83177225 - HERVH LTR ERV1 -14 7699 7324 1197 143 23 9 chr12 61105264 61105481 -83177008 - HERVH LTR ERV1 -1894 5819 5600 2654 143 0 23 chr12 61105482 61106113 -83176376 - HERVH LTR ERV1 -2564 5149 4488 3213 92 12 6 chr12 61106116 61106614 -83175875 - HERVH LTR ERV1 -3721 3992 3492 850 137 20 0 chr12 61106604 61106750 -83175739 - HERVH LTR ERV1 -4423 3290 3142 * 16425 92 12 10 chr12 61106731 61109262 -83173227 - HERVH LTR ERV1 -4718 2995 460 3832 115 17 12 chr12 61109258 61109904 -83172585 - HERVH LTR ERV1 -7064 649 1 * 2725 90 58 21 chr12 61109904 61110338 -83172151 - LTR7 LTR ERV1 0 450 1 224 366 84 71 chr12 61110601 61110923 -83171566 + L2 LINE L2 2852 3177 -95 361 300 174 26 chr12 61111817 61112047 -83170442 + L3 LINE CR1 1211 1474 -103 342 235 0 30 chr12 61114145 61114277 -83168212 + CT-rich Low_complexity Low_complexity 3 130 0 568 287 11 2 chr12 61114362 61114555 -83167934 + MIR SINE MIR 15 247 -15 208 271 143 14 chr12 61114745 61114815 -83167674 - L2 LINE L2 -1 3312 3234 348 198 47 94 chr12 61114816 61115028 -83167461 + L1MC5 LINE L1 7637 7838 -123 319 253 43 74 chr12 61116585 61116747 -83165742 + MLT1G LTR MaLR 390 546 -44 185 330 92 83 chr12 61116818 61117256 -83165233 + L2 LINE L2 2598 3037 -235 232 350 84 35 chr12 61119466 61119692 -83162797 + L2 LINE L2 2924 3160 -112 25 0 0 0 chr12 61119925 61119950 -83162539 + AT_rich Low_complexity Low_complexity 1 25 0 2468 54 0 0 chr12 61119953 61120249 -83162240 + AluY SINE Alu 1 296 -15 233 316 126 11 chr12 61120433 61120623 -83161866 + MLT1J LTR MaLR 298 509 -2 590 324 20 19 chr12 61120639 61120878 -83161611 + MIR SINE MIR 19 262 0 3565 136 30 22 chr12 61121049 61121718 -83160771 - L1MC3 LINE L1 -3 7782 7109 371 279 54 16 chr12 61122123 61122252 -83160237 + MIR SINE MIR 108 241 -21 23 33 0 0 chr12 61122379 61122409 -83160080 + AT_rich Low_complexity Low_complexity 1 30 0 235 113 38 0 chr12 61123804 61123857 -83158632 + (CA)n Simple_repeat Simple_repeat 1 55 0 28 0 0 0 chr12 61124742 61124770 -83157719 + AT_rich Low_complexity Low_complexity 1 28 0 212 194 0 0 chr12 61126535 61126571 -83155918 + A-rich Low_complexity Low_complexity 1 36 0 281 257 71 0 chr12 61128254 61128324 -83154165 - MER81 DNA DNA -39 75 1 27 49 0 0 chr12 61128387 61128428 -83154061 + AT_rich Low_complexity Low_complexity 1 41 0 654 322 35 4 chr12 61129519 61129746 -83152743 - MIR SINE MIR 0 262 29 1851 116 63 4 chr12 61130491 61130786 -83151703 + AluSx SINE Alu 1 311 0 2476 60 3 0 chr12 61130843 61131141 -83151348 + AluY SINE Alu 1 299 -12 464 367 26 9 chr12 61131478 61131704 -83150785 - MIR SINE MIR -2 260 31 541 249 61 18 chr12 61131731 61131896 -83150593 - MER5B DNA MER1_type -4 174 3 203 237 0 51 chr12 61132579 61132638 -83149851 + CT-rich Low_complexity Low_complexity 3 58 0 402 344 32 14 chr12 61133015 61133233 -83149256 + MIR SINE MIR 4 225 -37 427 283 13 44 chr12 61133233 61133392 -83149097 - L2 LINE L2 -1 3312 3159 542 260 160 0 chr12 61134637 61134837 -83147652 + MIR SINE MIR 2 233 -29 634 234 6 123 chr12 61135557 61135873 -83146616 - MLT1K LTR MaLR 0 588 310 2396 65 3 19 chr12 61135943 61136250 -83146239 - AluSc SINE Alu -7 302 1 282 331 73 46 chr12 61136419 61136570 -83145919 - MIR3 SINE MIR -15 193 39 583 251 96 17 chr12 61136638 61136877 -83145612 + MIR SINE MIR 4 261 -1 320 331 151 12 chr12 61136902 61137074 -83145415 - MIR SINE MIR -50 212 17 2379 99 0 6 chr12 61137525 61137839 -83144650 + AluSx SINE Alu 1 312 0 280 303 161 23 chr12 61138663 61138822 -83143667 - MIR SINE MIR -41 221 29 255 307 0 0 chr12 61139042 61139117 -83143372 - MER5C DNA MER1_type -249 75 1 26 0 0 0 chr12 61142057 61142083 -83140406 + AT_rich Low_complexity Low_complexity 1 26 0 34 0 0 0 chr12 61142826 61142860 -83139629 + AT_rich Low_complexity Low_complexity 1 34 0 26 64 0 0 chr12 61142921 61142968 -83139521 + AT_rich Low_complexity Low_complexity 1 47 0 246 310 96 27 chr12 61143890 61144077 -83138412 - MIR SINE MIR -15 247 48 22 0 0 0 chr12 61144313 61144335 -83138154 + AT_rich Low_complexity Low_complexity 1 22 0 277 316 0 0 chr12 61145174 61145263 -83137226 + MIR SINE MIR 30 117 -98 234 308 120 26 chr12 61148430 61148547 -83133942 + MIR3 SINE MIR 15 142 -66 209 308 68 68 chr12 61148658 61148791 -83133698 + MIR3 SINE MIR 76 208 0 192 307 47 71 chr12 61149080 61149207 -83133282 - MIR SINE MIR -51 211 88 195 167 0 0 chr12 61149615 61149657 -83132832 + T-rich Low_complexity Low_complexity 2 43 0 618 264 98 33 chr12 61150029 61150305 -83132184 - MLT1I LTR MaLR 0 409 116 2252 99 0 10 chr12 61150889 61151193 -83131296 + AluSg SINE Alu 1 301 -9 284 253 147 98 chr12 61152241 61152506 -83129983 + MLT1K LTR MaLR 311 588 0 383 345 47 6 chr12 61155140 61155311 -83127178 - MIR SINE MIR -12 250 73 2200 136 0 0 chr12 61155408 61155717 -83126772 - AluSq SINE Alu -3 310 2 205 152 0 0 chr12 61156473 61156506 -83125983 + GA-rich Low_complexity Low_complexity 2 34 0 1504 183 101 46 chr12 61156843 61157280 -83125209 - MLT1C LTR MaLR 0 467 7 870 259 68 99 chr12 61157286 61157668 -83124821 + Zaphod DNA AcHobo 7 376 -3655 2350 72 10 3 chr12 61159391 61159683 -83122806 + AluY SINE Alu 2 295 -16 26 30 0 0 chr12 61159799 61159832 -83122657 + AT_rich Low_complexity Low_complexity 1 33 0 1615 211 103 21 chr12 61161204 61161371 -83121118 + MLT1C LTR MaLR 6 158 -309 1917 123 13 44 chr12 61161371 61161688 -83120801 + AluSx SINE Alu 1 307 -5 1615 211 103 21 chr12 61161688 61161946 -83120543 + MLT1C LTR MaLR 158 466 -1 1393 211 92 70 chr12 61162254 61162368 -83120121 + Zaphod DNA AcHobo 364 474 -3557 2212 113 0 19 chr12 61162368 61162677 -83119812 - AluSx SINE Alu -7 305 3 1393 211 92 70 chr12 61162677 61163160 -83119329 + Zaphod DNA AcHobo 474 974 -3057 895 246 75 6 chr12 61163193 61163551 -83118938 + Zaphod DNA AcHobo 3583 3965 -66 227 190 0 86 chr12 61163649 61163707 -83118782 + Zaphod DNA AcHobo 3979 4031 0 1631 134 68 91 chr12 61163774 61164169 -83118320 - MLT1B LTR MaLR -4 386 1 21 0 0 0 chr12 61166570 61166591 -83115898 + AT_rich Low_complexity Low_complexity 1 21 0 332 283 193 0 chr12 61166901 61167067 -83115422 + MIR SINE MIR 65 262 0 2403 213 117 40 chr12 61167195 61168026 -83114463 + L1MC3 LINE L1 6891 7785 0 615 315 55 5 chr12 61169122 61169322 -83113167 + MIR SINE MIR 21 230 -32 204 40 0 0 chr12 61171095 61171120 -83111369 + (A)n Simple_repeat Simple_repeat 1 25 0 367 287 66 25 chr12 61172240 61172362 -83110127 - L2 LINE L2 0 3272 3146 36 53 0 0 chr12 61172761 61172818 -83109671 + AT_rich Low_complexity Low_complexity 1 57 0 441 298 73 7 chr12 61172879 61173030 -83109459 - L2 LINE L2 -8 3305 3145 271 333 40 0 chr12 61173505 61173604 -83108885 - L2 LINE L2 -223 3049 2947 203 355 54 0 chr12 61174731 61174824 -83107665 - MIR SINE MIR -72 136 39 208 338 48 28 chr12 61175694 61175839 -83106650 + L2 LINE L2 2232 2379 -935 201 225 0 0 chr12 61176407 61176447 -83106042 + L3b LINE CR1 1541 1580 -3 201 359 0 13 chr12 61177794 61177872 -83104617 + L3 LINE CR1 951 1027 -550 324 212 92 82 chr12 61177873 61178057 -83104432 - MLT1J LTR MaLR -2 509 324 2329 135 0 35 chr12 61178083 61178460 -83104029 - THE1B LTR MaLR 0 364 1 450 293 53 39 chr12 61178698 61178962 -83103527 + L3 LINE CR1 1023 1348 -229 180 0 0 0 chr12 61179170 61179190 -83103299 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 294 29 0 0 chr12 61179189 61179224 -83103265 + (CA)n Simple_repeat Simple_repeat 1 35 0 305 283 44 9 chr12 61179823 61179936 -83102553 - MER94 DNA DNA -2 132 16 596 294 46 5 chr12 61180547 61180744 -83101745 + MIR SINE MIR 1 205 -57 243 260 0 0 chr12 61181741 61181791 -83100698 + L2 LINE L2 3254 3303 -10 222 370 5 72 chr12 61181787 61181995 -83100494 + L3 LINE CR1 1383 1576 -1 * 213 207 81 23 chr12 61182316 61182403 -83100086 + (AATAG)n Simple_repeat Simple_repeat 2 93 0 22 0 0 0 chr12 61183630 61183652 -83098837 + AT_rich Low_complexity Low_complexity 1 22 0 489 260 89 27 chr12 61184395 61184541 -83097948 + MIR SINE MIR 57 211 -51 423 304 89 13 chr12 61184621 61184779 -83097710 + MIR3 SINE MIR 3 172 -36 2040 95 0 23 chr12 61185065 61185370 -83097119 + AluY SINE Alu 1 298 -13 595 274 96 9 chr12 61185887 61186117 -83096372 + MIR SINE MIR 13 262 0 309 364 38 24 chr12 61186213 61186391 -83096098 - MIR SINE MIR -60 202 18 385 320 140 11 chr12 61186429 61186607 -83095882 - MIR SINE MIR -21 241 41 374 263 256 0 chr12 61186769 61186906 -83095583 - MIR SINE MIR -38 224 53 210 278 19 0 chr12 61187101 61187155 -83095334 - L2 LINE L2 -79 3193 3139 192 288 38 38 chr12 61187275 61187355 -83095134 + MER5B DNA MER1_type 1 80 -98 193 273 0 91 chr12 61187287 61187353 -83095136 - MER5A DNA MER1_type -13 176 117 44 35 0 0 chr12 61188919 61188977 -83093512 + AT_rich Low_complexity Low_complexity 1 58 0 288 322 67 53 chr12 61189211 61189419 -83093070 - L2 LINE L2 -235 3037 2827 196 294 96 48 chr12 61190624 61190770 -83091719 - L2 LINE L2 -290 2982 2830 345 247 21 11 chr12 61191841 61191934 -83090555 - MIR SINE MIR -65 197 104 435 240 100 20 chr12 61195246 61195396 -83087093 - L1MC5 LINE L1 -87 7874 7713 196 325 24 57 chr12 61195854 61195977 -83086512 + MIR3 SINE MIR 5 123 -85 881 269 19 39 chr12 61197267 61197523 -83084966 + MIR SINE MIR 12 262 0 371 335 68 24 chr12 61197547 61197753 -83084736 - MIR SINE MIR -1 261 47 195 388 93 16 chr12 61198135 61198393 -83084096 + L2 LINE L2 2944 3221 -92 310 286 48 9 chr12 61198737 61198842 -83083647 + MIR SINE MIR 134 242 -20 2147 124 3 0 chr12 61199543 61199850 -83082639 + AluSx SINE Alu 1 308 -4 927 248 32 5 chr12 61199947 61200165 -83082324 - MER58A DNA MER1_type 0 224 1 304 197 45 0 chr12 61200267 61200333 -83082156 + MIR SINE MIR 150 218 -44 852 290 34 25 chr12 61200365 61200460 -83082029 + MIR SINE MIR 23 116 -146 2922 163 61 14 chr12 61200460 61201038 -83081451 - MER6A DNA MER2_type 0 605 1 852 290 34 25 chr12 61201038 61201180 -83081309 + MIR SINE MIR 116 262 0 1735 181 46 0 chr12 61202129 61202499 -83079990 - Charlie5 DNA MER1_type 0 2624 2238 495 188 14 65 chr12 61202512 61202650 -83079839 - MER3 DNA MER1_type -42 167 37 52 50 0 0 chr12 61202861 61202941 -83079548 + AT_rich Low_complexity Low_complexity 1 80 0 230 180 0 20 chr12 61204282 61204332 -83078157 - MER51C LTR ERV1 -175 465 417 253 365 81 51 chr12 61204688 61205118 -83077371 - L2 LINE L2 0 3272 2830 928 259 59 0 chr12 61205463 61205699 -83076790 - MIR SINE MIR -12 250 1 261 299 78 8 chr12 61206743 61206904 -83075585 + MIR SINE MIR 17 206 -56 2226 84 0 3 chr12 61208069 61208388 -83074101 + AluSx SINE Alu 1 318 0 721 190 16 0 chr12 61208578 61208699 -83073790 + FLAM_A SINE Alu 1 123 -10 22 35 0 0 chr12 61208701 61208730 -83073759 + AT_rich Low_complexity Low_complexity 1 29 0 6372 225 80 77 chr12 61209640 61211693 -83070796 - L1ME1 LINE L1 -231 6004 3808 615 187 30 52 chr12 61211693 61211827 -83070662 + AluJo SINE Alu 87 217 -95 6372 225 80 77 chr12 61211827 61212729 -83069760 - L1ME1 LINE L1 -2427 3808 2911 2059 97 3 21 chr12 61212739 61213029 -83069460 - AluSx SINE Alu -12 300 16 788 254 68 8 chr12 61213046 61213298 -83069191 - L1ME1 LINE L1 -3388 2827 2561 3754 258 70 48 chr12 61213304 61214807 -83067682 - L1ME1 LINE L1 -4852 1544 8 23 0 0 0 chr12 61215638 61215661 -83066828 + AT_rich Low_complexity Low_complexity 1 23 0 18444 28 0 0 chr12 61216520 61219487 -83063002 + L1PA4 LINE L1 3185 6152 -3 181 311 0 0 chr12 61219535 61219580 -83062909 - L2 LINE L2 -235 3037 2993 283 308 62 38 chr12 61220751 61221040 -83061449 + HAL1b LINE L1 224 519 -829 383 310 147 15 chr12 61221119 61221316 -83061173 - MIR SINE MIR -27 235 13 22 56 0 0 chr12 61222272 61222308 -83060181 + AT_rich Low_complexity Low_complexity 1 36 0 1709 185 4 0 chr12 61222311 61222592 -83059897 - AluJo SINE Alu -30 282 1 256 204 23 80 chr12 61222789 61222877 -83059612 + L2 LINE L2 3231 3313 0 271 264 75 38 chr12 61223093 61223199 -83059290 - MIR SINE MIR -64 198 89 1954 157 22 19 chr12 61223328 61223691 -83058798 - THE1B LTR MaLR 0 364 1 4964 130 28 3 chr12 61223974 61224936 -83057553 - L1PA15 LINE L1 -147 6018 5034 2153 201 38 18 chr12 61224937 61225439 -83057050 + L1PA15 LINE L1 4550 5061 -1085 594 293 106 81 chr12 61226648 61226915 -83055574 + L2 LINE L2 2383 2642 -671 2068 126 33 0 chr12 61226915 61227217 -83055272 + AluSx SINE Alu 1 312 0 594 293 106 81 chr12 61227217 61227855 -83054634 + L2 LINE L2 2642 3313 0 284 318 187 0 chr12 61228178 61228285 -83054204 + MIR SINE MIR 35 161 -101 556 168 11 0 chr12 61228287 61228409 -83054080 + AluSg/x SINE Alu 188 310 0 221 260 39 0 chr12 61228541 61228618 -83053871 + MIR SINE MIR 182 261 -1 198 346 103 0 chr12 61229243 61229321 -83053168 - L2 LINE L2 -218 3054 2969 737 339 34 0 chr12 61229349 61229582 -83052907 - MIR SINE MIR 0 262 22 1915 64 32 32 chr12 61230228 61230508 -83051981 - L1PA8A LINE L1 -29 6102 5823 891 299 17 0 chr12 61230906 61231137 -83051352 + MIR SINE MIR 3 237 -25 625 145 57 8 chr12 61231387 61231511 -83050978 + L1MA5A LINE L1 6166 6295 -2 1617 84 0 5 chr12 61231857 61232084 -83050405 - AluY SINE Alu 0 305 80 234 0 0 0 chr12 61232364 61232390 -83050099 + (A)n Simple_repeat Simple_repeat 1 26 0 549 320 71 28 chr12 61232450 61232775 -83049714 + L3 LINE CR1 1238 1576 -1 349 260 38 95 chr12 61232911 61232946 -83049543 - MIR SINE MIR -30 232 197 1414 193 82 69 chr12 61232946 61233407 -83049082 + MLT1C LTR MaLR 1 467 0 349 260 38 95 chr12 61233407 61233600 -83048889 - MIR SINE MIR -65 197 24 21 0 0 0 chr12 61234335 61234356 -83048133 + AT_rich Low_complexity Low_complexity 1 21 0 282 73 0 0 chr12 61234491 61234532 -83047957 + (TG)n Simple_repeat Simple_repeat 2 42 0 496 121 61 0 chr12 61234585 61234717 -83047772 + (TA)n Simple_repeat Simple_repeat 2 141 0 331 157 24 60 chr12 61234733 61234866 -83047623 + (TA)n Simple_repeat Simple_repeat 2 129 -32 261 57 0 0 chr12 61234866 61234901 -83047588 + (TG)n Simple_repeat Simple_repeat 2 36 0 331 157 24 60 chr12 61234901 61234933 -83047556 + (TA)n Simple_repeat Simple_repeat 129 161 0 496 131 44 29 chr12 61234954 61235215 -83047274 + (TA)n Simple_repeat Simple_repeat 1 264 0 369 0 0 0 chr12 61235230 61235271 -83047218 + (TG)n Simple_repeat Simple_repeat 2 42 0 581 92 10 0 chr12 61235328 61235426 -83047063 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 230 247 43 65 chr12 61235525 61235618 -83046871 - L2 LINE L2 -3 3310 3220 227 314 219 24 chr12 61235618 61235828 -83046661 + MIR SINE MIR 2 252 -10 241 310 0 0 chr12 61236368 61236426 -83046063 + MIR SINE MIR 205 262 0 185 286 20 0 chr12 61237294 61237343 -83045146 - MIR SINE MIR -93 115 66 1591 119 52 0 chr12 61237518 61237769 -83044720 + L1MA3 LINE L1 5516 5779 -521 2046 131 3 3 chr12 61238997 61239309 -83043180 + AluSx SINE Alu 1 312 0 1765 121 37 3 chr12 61239482 61239780 -83042709 + L1MA3 LINE L1 5998 6305 0 1437 141 0 0 chr12 61240532 61240774 -83041715 - L1MA6 LINE L1 -3 6297 6056 524 380 91 20 chr12 61240796 61241149 -83041340 + L2 LINE L2 2893 3270 -2 29 28 0 0 chr12 61241825 61241861 -83040628 + AT_rich Low_complexity Low_complexity 1 36 0 219 196 0 22 chr12 61242151 61242197 -83040292 + CT-rich Low_complexity Low_complexity 3 47 0 24 53 0 0 chr12 61243590 61243628 -83038861 + AT_rich Low_complexity Low_complexity 1 38 0 1116 174 89 34 chr12 61244169 61244461 -83038028 - THE1C LTR MaLR -101 325 1 312 261 152 7 chr12 61245435 61245573 -83036916 + L2 LINE L2 3154 3311 -2 659 240 0 0 chr12 61246638 61246767 -83035722 + FLAM_A SINE Alu 1 129 -4 681 156 0 0 chr12 61246784 61246893 -83035596 + FRAM SINE Alu 1 104 -72 2469 188 9 20 chr12 61246893 61247340 -83035149 + LTR32 LTR ERVL 17 458 -13 347 145 16 0 chr12 61247339 61247401 -83035088 + Alu SINE Alu 236 298 -2 * 2356 87 0 0 chr12 61247413 61247712 -83034777 + AluSx SINE Alu 1 299 -13 504 89 0 0 chr12 61247723 61247802 -83034687 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 1860 160 101 49 chr12 61248030 61248310 -83034179 - MER31A LTR ERV1 -30 455 142 1624 134 94 22 chr12 61248310 61248431 -83034058 + AluSx SINE Alu 1 112 -237 2555 57 0 0 chr12 61248431 61248731 -83033758 + AluY SINE Alu 1 300 -11 1624 134 94 22 chr12 61248731 61248938 -83033551 + AluSx SINE Alu 112 349 0 1860 160 101 49 chr12 61248938 61249081 -83033408 - MER31A LTR ERV1 -343 142 8 1175 172 46 13 chr12 61249355 61249593 -83032896 - L1PA16 LINE L1 -15 6151 5906 422 239 18 0 chr12 61250061 61250174 -83032315 + L1MA9 LINE L1 6168 6282 -30 597 202 34 0 chr12 61250872 61250991 -83031498 - FLAM_A SINE Alu -10 123 1 763 185 93 19 chr12 61251149 61251311 -83031178 - MER63A DNA MER1_type -36 174 1 232 362 68 28 chr12 61252441 61252618 -83029871 - MIR3 SINE MIR -1 207 24 295 309 154 0 chr12 61253394 61253504 -83028985 - L3 LINE CR1 -11 1566 1440 431 202 46 9 chr12 61253562 61253671 -83028818 + L1MC4a LINE L1 7365 7477 -331 570 196 9 0 chr12 61253680 61253787 -83028702 + MLT1A1 LTR MaLR 258 365 0 708 89 6 172 chr12 61253809 61253978 -83028511 + L1MD3 LINE L1 7840 7980 -15 2176 121 0 0 chr12 61253992 61254290 -83028199 + AluSx SINE Alu 1 298 -14 361 226 338 15 chr12 61254614 61254747 -83027742 + MER5B DNA MER1_type 1 176 -2 275 272 0 25 chr12 61255275 61255356 -83027133 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 385 266 76 52 chr12 61256147 61256192 -83026297 + L1ME4a LINE L1 5624 5666 -455 2375 98 0 0 chr12 61256192 61256499 -83025990 + AluSc SINE Alu 2 308 -1 385 266 76 52 chr12 61256499 61256743 -83025746 + L1ME4a LINE L1 5666 5920 -201 782 258 56 9 chr12 61256789 61257002 -83025487 + MIR SINE MIR 40 262 0 209 146 21 0 chr12 61257005 61257053 -83025436 + (TTA)n Simple_repeat Simple_repeat 3 51 0 22 0 0 0 chr12 61258048 61258070 -83024419 + AT_rich Low_complexity Low_complexity 1 22 0 217 324 18 36 chr12 61258428 61258539 -83023950 + MIR SINE MIR 39 147 -61 380 309 115 5 chr12 61259219 61259410 -83023079 + L2 LINE L2 1785 1996 -1318 201 311 88 50 chr12 61259460 61259698 -83022791 + L2 LINE L2 2243 2489 -825 194 346 115 28 chr12 61259832 61260118 -83022371 + L2 LINE L2 2109 2419 -895 226 279 209 32 chr12 61260119 61260277 -83022212 + L2 LINE L2 2336 2521 -793 7862 176 42 19 chr12 61261004 61264015 -83018474 + L1PBa LINE L1 325 3265 -3597 2005 99 81 14 chr12 61264015 61264299 -83018190 + AluSx SINE Alu 1 303 -9 7862 176 42 19 chr12 61264299 61264532 -83017957 + L1PBa LINE L1 3265 3491 -3371 180 0 0 0 chr12 61264532 61264552 -83017937 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7862 176 42 19 chr12 61264552 61264588 -83017901 + L1PBa LINE L1 3491 3525 -3337 2190 126 3 0 chr12 61264588 61264890 -83017599 + AluSp SINE Alu 2 304 -9 7862 176 42 19 chr12 61264890 61265389 -83017100 + L1PBa LINE L1 3525 4410 -2452 985 44 0 15 chr12 61265395 61265530 -83016959 + L1P LINE L1 5354 5486 -1376 497 99 0 12 chr12 61265515 61265596 -83016893 + L1 LINE L1 5407 5486 -1376 * 605 37 0 12 chr12 61265581 61265662 -83016827 + L1P LINE L1 4691 4770 -1376 * 3961 33 2 0 chr12 61265647 61266135 -83016354 + L1P LINE L1 4691 5179 -967 6725 54 0 0 chr12 61266135 61266962 -83015527 + L1PA5 LINE L1 5317 6149 -5 1490 212 0 13 chr12 61266962 61267269 -83015220 + L1 LINE L1 3697 4001 -2145 279 0 0 0 chr12 61267270 61267301 -83015188 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 338 0 24 0 chr12 61267300 61267342 -83015147 + (TA)n Simple_repeat Simple_repeat 1 43 0 2146 129 29 6 chr12 61267347 61267697 -83014792 + L1PB1 LINE L1 5794 6151 0 438 319 7 28 chr12 61267699 61267843 -83014646 + MIR SINE MIR 43 183 -79 2174 117 0 3 chr12 61267877 61268167 -83014322 + AluSg SINE Alu 3 291 -19 1880 174 6 18 chr12 61268198 61268537 -83013952 - MER1B DNA MER1_type 0 337 3 669 198 0 56 chr12 61269400 61269562 -83012927 + FRAM SINE Alu 23 175 -1 255 282 48 19 chr12 61270643 61270746 -83011743 - MIR SINE MIR -76 186 81 316 346 0 9 chr12 61271258 61271365 -83011124 + L2 LINE L2 2609 2714 -600 186 189 0 0 chr12 61271651 61271688 -83010801 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 439 242 108 27 chr12 61271693 61271879 -83010610 - L1ME3A LINE L1 -219 6187 5987 2305 130 13 16 chr12 61271897 61272273 -83010216 - THE1C LTR MaLR 0 375 1 1680 161 47 10 chr12 61272303 61272602 -83009887 + MLT1A1 LTR MaLR 56 365 0 567 268 104 64 chr12 61272603 61272792 -83009697 - L1ME3A LINE L1 -422 5976 5796 746 280 47 0 chr12 61272792 61273006 -83009483 + MER58A DNA MER1_type 1 224 0 567 268 104 64 chr12 61273006 61273346 -83009143 - L1ME3A LINE L1 -602 5796 5471 234 0 0 0 chr12 61273346 61273372 -83009117 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 279 0 0 0 chr12 61273371 61273402 -83009087 + (TG)n Simple_repeat Simple_repeat 2 32 0 567 268 104 64 chr12 61273372 61273430 -83009059 - L1ME3A LINE L1 -927 5471 5417 198 0 0 0 chr12 61273430 61273452 -83009037 + (TTAA)n Simple_repeat Simple_repeat 2 23 0 1593 181 18 0 chr12 61273452 61273729 -83008760 - AluJo SINE Alu -30 282 1 567 268 104 64 chr12 61273729 61274096 -83008393 - L1ME3A LINE L1 -980 5418 5000 1999 154 31 3 chr12 61274268 61274618 -83007871 - MER46B DNA MER2_type -1 235 1 581 323 37 7 chr12 61274889 61275186 -83007303 - L1ME3A LINE L1 -2036 4346 4041 384 262 50 20 chr12 61275195 61275397 -83007092 - L1ME3A LINE L1 -3090 3292 3085 387 330 17 9 chr12 61275613 61275843 -83006646 - L1ME3A LINE L1 -3383 2999 2768 332 257 57 45 chr12 61275907 61276162 -83006327 - L1ME3A LINE L1 -3756 2626 2373 321 26 0 0 chr12 61277583 61277621 -83004868 + (CA)n Simple_repeat Simple_repeat 2 39 0 269 315 19 65 chr12 61277625 61277733 -83004756 - L2 LINE L2 -25 3247 3145 2498 65 0 7 chr12 61277839 61278149 -83004340 - AluY SINE Alu -3 308 1 1002 292 84 28 chr12 61279931 61280782 -83001707 - L2 LINE L2 -7 3306 2400 252 59 0 0 chr12 61280853 61280887 -83001602 + (CA)n Simple_repeat Simple_repeat 2 35 0 298 325 12 0 chr12 61281399 61281482 -83001007 - MER5A DNA MER1_type -37 152 69 396 0 0 0 chr12 61281492 61281536 -83000953 + (TTA)n Simple_repeat Simple_repeat 2 45 0 725 199 31 37 chr12 61281539 61281700 -83000789 - AluJo SINE Alu -30 282 123 456 276 167 22 chr12 61283791 61284019 -82998470 + MIR SINE MIR 2 262 0 2264 112 0 3 chr12 61284169 61284472 -82998017 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr12 61285451 61285474 -82997015 + AT_rich Low_complexity Low_complexity 1 23 0 205 315 55 0 chr12 61285671 61285744 -82996745 - MIR SINE MIR -102 160 84 213 224 0 20 chr12 61285881 61285930 -82996559 + GA-rich Low_complexity Low_complexity 2 49 0 297 0 0 0 chr12 61287104 61287137 -82995352 + (TG)n Simple_repeat Simple_repeat 2 34 0 1859 144 3 32 chr12 61287465 61287592 -82994897 + AluJb SINE Alu 1 130 -182 225 65 0 0 chr12 61287592 61287623 -82994866 + (TA)n Simple_repeat Simple_repeat 2 32 0 1859 144 3 32 chr12 61287623 61287807 -82994682 + AluJb SINE Alu 130 303 -9 269 264 56 14 chr12 61288447 61288519 -82993970 - MIR SINE MIR -114 148 74 571 360 156 20 chr12 61288718 61289124 -82993365 - L2 LINE L2 -343 2971 2621 207 0 0 0 chr12 61289124 61289147 -82993342 + (TGG)n Simple_repeat Simple_repeat 1 23 0 571 360 156 20 chr12 61289147 61289470 -82993019 - L2 LINE L2 -693 2621 2143 2130 115 0 31 chr12 61289647 61289969 -82992520 + AluSx SINE Alu 1 312 0 219 241 0 0 chr12 61290404 61290458 -82992031 + T-rich Low_complexity Low_complexity 5 58 0 21 0 0 0 chr12 61293038 61293059 -82989430 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 61295893 61295915 -82986574 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 61298718 61298743 -82983746 + AT_rich Low_complexity Low_complexity 1 25 0 2444 68 0 0 chr12 61299466 61299759 -82982730 - AluY SINE Alu -18 293 1 2291 97 3 0 chr12 61301336 61301646 -82980843 - AluY SINE Alu 0 311 1 319 270 27 0 chr12 61301658 61301732 -82980757 - MER5A DNA MER1_type -57 132 57 221 282 73 68 chr12 61301970 61302176 -82980313 - L2 LINE L2 -556 2758 2552 * 722 272 118 0 chr12 61302157 61302385 -82980104 + MIR SINE MIR 7 261 -1 630 248 79 31 chr12 61302395 61302649 -82979840 - L2 LINE L2 -4 3309 3044 529 258 105 36 chr12 61302648 61302954 -82979535 - L2 LINE L2 -14 3299 2973 * 22 35 0 0 chr12 61303028 61303057 -82979432 + AT_rich Low_complexity Low_complexity 1 29 0 243 258 106 76 chr12 61304190 61304390 -82978099 + MIR SINE MIR 21 216 -46 2161 138 34 78 chr12 61305995 61306443 -82976046 - MSTC LTR MaLR 0 428 1 477 352 164 19 chr12 61306711 61307234 -82975255 + L2 LINE L2 2670 3272 0 7303 37 11 1 chr12 61307869 61309401 -82973088 + L1PA3 LINE L1 4615 6155 0 1063 330 170 26 chr12 61310057 61310355 -82972134 - L3 LINE CR1 -88 1489 1235 832 189 130 11 chr12 61310355 61310540 -82971949 + MER3 DNA MER1_type 2 208 -1 1063 330 170 26 chr12 61310540 61311233 -82971256 - L3 LINE CR1 -342 1235 355 1316 267 127 67 chr12 61311461 61312729 -82969760 + HAL1 LINE L1 10 1353 -1154 564 251 12 25 chr12 61312778 61312941 -82969548 + MER5A DNA MER1_type 29 189 0 441 280 151 0 chr12 61312990 61313017 -82969472 + HAL1 LINE L1 1540 1562 -945 2325 99 0 0 chr12 61313017 61313321 -82969168 + AluSc SINE Alu 1 304 -5 441 280 151 0 chr12 61313321 61313525 -82968964 + HAL1 LINE L1 1562 1806 -701 299 303 227 8 chr12 61313625 61313757 -82968732 - MIR3 SINE MIR -6 202 42 621 241 0 0 chr12 61314394 61314510 -82967979 - FLAM_A SINE Alu -17 116 1 314 331 41 66 chr12 61316194 61316805 -82965684 + L2 LINE L2 2622 3214 -58 227 361 9 0 chr12 61319211 61319319 -82963170 + MIR SINE MIR 153 261 -1 861 222 21 0 chr12 61319967 61320156 -82962333 + MER3 DNA MER1_type 10 202 -7 1657 162 32 23 chr12 61320565 61320874 -82961615 + AluJo SINE Alu 1 312 0 241 274 0 0 chr12 61322104 61322155 -82960334 - L3b LINE CR1 -1 1582 1532 965 189 0 6 chr12 61322400 61322569 -82959920 + MER5B DNA MER1_type 11 178 0 186 43 0 0 chr12 61326304 61326327 -82956162 + (CCTA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr12 61326419 61326440 -82956049 + AT_rich Low_complexity Low_complexity 1 21 0 192 297 66 11 chr12 61326464 61326555 -82955934 - MIR SINE MIR -28 234 139 216 187 27 67 chr12 61327897 61327972 -82954517 + MIR SINE MIR 151 222 -40 206 73 0 49 chr12 61328014 61328055 -82954434 + (TTTTTA)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr12 61329568 61329590 -82952899 + AT_rich Low_complexity Low_complexity 1 22 0 192 338 44 0 chr12 61329625 61329693 -82952796 - MIR SINE MIR -95 113 43 2173 107 0 28 chr12 61331643 61331961 -82950528 - AluSg SINE Alu 0 310 2 495 284 109 0 chr12 61332055 61332238 -82950251 + MIR SINE MIR 48 250 -12 184 290 0 65 chr12 61332508 61332570 -82949919 - MIR SINE MIR -126 136 79 237 333 21 69 chr12 61332588 61332732 -82949757 + MIR3 SINE MIR 6 142 -66 2258 102 0 37 chr12 61335893 61336215 -82946274 - AluSx SINE Alu -2 310 1 1700 51 9 0 chr12 61340571 61340786 -82941703 - L1PA4 LINE L1 0 6155 5939 198 406 111 0 chr12 61343478 61343658 -82938831 + L2 LINE L2 2553 2752 -562 191 321 60 36 chr12 61343827 61343911 -82938578 - L2 LINE L2 -5 3267 3182 305 287 96 27 chr12 61344831 61344946 -82937543 - L1M4 LINE L1 -3780 2366 2232 1064 160 61 0 chr12 61344946 61345177 -82937312 + L1MB2 LINE L1 5926 6170 -1 305 287 96 27 chr12 61345177 61345249 -82937240 - L1M4 LINE L1 -3914 2232 2166 2746 169 38 12 chr12 61345249 61345751 -82936738 - MLT2B2 LTR ERVL 0 515 1 2183 106 38 0 chr12 61345798 61346091 -82936398 - AluSg SINE Alu -5 305 2 229 271 0 24 chr12 61346098 61346183 -82936306 + T-rich Low_complexity Low_complexity 2 84 0 871 240 29 57 chr12 61346465 61346711 -82935778 + MER8 DNA MER2_type 1 239 0 405 322 181 10 chr12 61346763 61347061 -82935428 - HAL1 LINE L1 -856 1651 1303 2080 269 190 22 chr12 61348513 61349314 -82933175 - L2 LINE L2 -4 3309 2644 2164 118 0 10 chr12 61349314 61349618 -82932871 + AluSx SINE Alu 5 305 -7 2080 269 190 22 chr12 61349618 61349966 -82932523 - L2 LINE L2 -669 2644 1977 2407 121 33 3 chr12 61349967 61350330 -82932159 + THE1C LTR MaLR 2 375 0 9400 130 37 3 chr12 61350330 61351850 -82930639 + THE1C-int LTR MaLR 1 1571 -9 1858 111 22 97 chr12 61351850 61352220 -82930269 + THE1C LTR MaLR 7 348 -27 6057 58 32 4 chr12 61352220 61352979 -82929510 + LTR17 LTR ERV1 1 780 0 45945 47 12 19 chr12 61352979 61359036 -82923453 + HERV17 LTR ERV1 1 6019 -2607 268 77 0 0 chr12 61359029 61359068 -82923421 + HERV17 LTR ERV1 7510 7548 -1078 * 2174 76 0 0 chr12 61359058 61359346 -82923143 + HERV17 LTR ERV1 8335 8622 -4 6023 63 30 3 chr12 61359350 61360109 -82922380 + LTR17 LTR ERV1 1 780 0 896 310 26 30 chr12 61360162 61360501 -82921988 - L2 LINE L2 -1366 1948 1611 316 309 136 47 chr12 61361579 61361770 -82920719 + MIR SINE MIR 3 210 -52 185 320 10 58 chr12 61362068 61362171 -82920318 + MIR SINE MIR 124 221 -41 205 294 29 0 chr12 61363727 61363795 -82918694 + GA-rich Low_complexity Low_complexity 3 72 0 337 353 34 44 chr12 61365157 61365361 -82917128 + L2 LINE L2 2862 3063 -209 578 228 121 36 chr12 61365367 61365591 -82916898 + L2 LINE L2 1297 1539 -1775 3522 286 70 31 chr12 61366149 61367850 -82914639 + L2 LINE L2 1534 3305 -8 194 304 200 22 chr12 61367864 61367999 -82914490 + L2 LINE L2 3097 3255 -17 270 228 11 22 chr12 61368572 61368664 -82913825 + (TA)n Simple_repeat Simple_repeat 1 91 0 256 159 32 0 chr12 61368777 61368840 -82913649 + (TA)n Simple_repeat Simple_repeat 1 65 0 299 265 6 93 chr12 61368994 61369156 -82913333 - MIR SINE MIR -5 257 110 563 320 84 19 chr12 61369188 61369688 -82912801 - L1ME LINE L1 -667 5497 4962 28291 110 10 31 chr12 61370152 61375535 -82906954 + L1P3 LINE L1 5 5416 -1045 3036 52 13 0 chr12 61375537 61375922 -82906567 + L1PA7 LINE L1 5765 6154 0 730 187 28 115 chr12 61376257 61376558 -82905931 - LTR28 LTR ERV1 -477 543 121 360 250 29 17 chr12 61376609 61376729 -82905760 - LTR28 LTR ERV1 -712 114 1 257 154 46 31 chr12 61376729 61376794 -82905695 - MLT1L LTR MaLR -406 209 144 654 261 33 33 chr12 61376800 61377015 -82905474 - MER58A DNA MER1_type -8 216 2 249 125 21 21 chr12 61377045 61377093 -82905396 - MLT1L LTR MaLR -342 48 1 241 57 0 0 chr12 61377109 61377144 -82905345 + L1PA13 LINE L1 6014 6048 -115 524 281 104 79 chr12 61377447 61377775 -82904714 - MLT1E2 LTR MaLR -288 336 1 474 281 0 67 chr12 61377889 61378080 -82904409 + HAL1 LINE L1 1491 1668 -839 2007 176 14 6 chr12 61378080 61378439 -82904050 - MLT1A1 LTR MaLR 0 365 4 474 281 0 67 chr12 61378439 61378457 -82904032 + HAL1 LINE L1 1668 1686 -821 732 121 27 27 chr12 61378458 61378607 -82903882 + L1PA13 LINE L1 6014 6162 -1 6274 58 14 39 chr12 61378780 61380411 -82902078 + L1PA15 LINE L1 4556 6162 -3 196 277 15 31 chr12 61380414 61380479 -82902010 + L2 LINE L2 3160 3223 -49 730 306 58 42 chr12 61381111 61381603 -82900886 - L2 LINE L2 -45 3268 2778 1159 76 0 0 chr12 61382575 61382732 -82899757 - L1PA8A LINE L1 -452 5679 5523 2919 75 5 5 chr12 61382732 61383130 -82899359 + L1PA7 LINE L1 5753 6154 0 838 258 19 75 chr12 61383130 61383364 -82899125 - L1M4c LINE L1 -4645 1739 1544 896 206 96 99 chr12 61383364 61383729 -82898760 - MLT1A1 LTR MaLR 0 365 2 838 258 19 75 chr12 61383729 61383971 -82898518 - L1M4c LINE L1 -4840 1544 1290 1257 179 125 92 chr12 61384866 61385346 -82897143 + L1MC3 LINE L1 7258 7753 -32 21 0 0 0 chr12 61386113 61386134 -82896355 + AT_rich Low_complexity Low_complexity 1 21 0 376 287 0 0 chr12 61387941 61388028 -82894461 + L2 LINE L2 3223 3309 -4 296 292 42 21 chr12 61389763 61389907 -82892582 + L3b LINE CR1 1107 1253 -330 23 33 0 0 chr12 61391085 61391115 -82891374 + AT_rich Low_complexity Low_complexity 1 30 0 195 243 135 40 chr12 61391614 61391688 -82890801 - MIR SINE MIR -74 188 108 2921 160 28 68 chr12 61392309 61393033 -82889456 + L1P4 LINE L1 4201 4895 -1251 2592 126 17 29 chr12 61393004 61393482 -82889007 + L1P4 LINE L1 5305 5776 -387 * 186 282 0 0 chr12 61393639 61393678 -82888811 - MIR SINE MIR -142 66 28 432 228 110 0 chr12 61393837 61393964 -82888525 - L1ME4a LINE L1 -16 6105 5965 182 167 0 24 chr12 61394055 61394097 -82888392 + (TA)n Simple_repeat Simple_repeat 2 42 0 41 48 0 0 chr12 61394142 61394204 -82888285 + AT_rich Low_complexity Low_complexity 1 62 0 2152 122 3 0 chr12 61394649 61394944 -82887545 - AluSx SINE Alu -16 296 1 314 319 11 0 chr12 61395091 61395185 -82887304 + MIR SINE MIR 45 139 -69 606 204 149 6 chr12 61395228 61395409 -82887080 - MER74C LTR ERVL -9 451 245 1075 106 0 0 chr12 61395755 61395897 -82886592 - AluSg/x SINE Alu -7 305 164 302 272 166 41 chr12 61397238 61397407 -82885082 + MIR SINE MIR 73 262 0 1574 127 28 14 chr12 61397461 61397744 -82884745 - L1PB2 LINE L1 0 6151 5865 22 0 0 0 chr12 61398717 61398739 -82883750 + AT_rich Low_complexity Low_complexity 1 22 0 1281 63 6 6 chr12 61398754 61398928 -82883561 + L1PA5 LINE L1 5980 6153 -1 303 308 71 12 chr12 61399093 61399262 -82883227 - L1ME1 LINE L1 -17 6149 5971 288 0 0 0 chr12 61399430 61399462 -82883027 + (TA)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr12 61399571 61399594 -82882895 + AT_rich Low_complexity Low_complexity 1 23 0 295 341 98 0 chr12 61399598 61399730 -82882759 + MIR3 SINE MIR 53 197 -11 237 65 0 0 chr12 61399779 61399810 -82882679 + (T)n Simple_repeat Simple_repeat 1 31 0 211 194 0 0 chr12 61400159 61400195 -82882294 + (TG)n Simple_repeat Simple_repeat 2 37 0 395 289 132 39 chr12 61400942 61401458 -82881031 + L1 LINE L1 3595 4158 -1988 207 139 0 0 chr12 61402325 61402361 -82880128 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 954 185 6 6 chr12 61402602 61402775 -82879714 + THE1C LTR MaLR 1 173 -202 1006 138 48 16 chr12 61402861 61403050 -82879439 + THE1C LTR MaLR 181 375 0 2456 128 39 5 chr12 61403431 61403977 -82878512 - L1P5 LINE L1 -453 5703 5144 916 198 19 5 chr12 61403972 61404184 -82878305 + L1P5 LINE L1 4908 5122 -1024 * 1009 207 79 40 chr12 61404184 61404488 -82878001 - Tigger4(Zombi) DNA MER2_type -2251 480 165 357 303 34 77 chr12 61404718 61405042 -82877447 + L2 LINE L2 2272 2581 -733 2380 161 40 0 chr12 61409178 61409583 -82872906 + MSTA LTR MaLR 8 428 0 322 275 0 0 chr12 61411077 61411146 -82871343 - L3 LINE CR1 -94 1483 1415 22 56 0 0 chr12 61411493 61411529 -82870960 + AT_rich Low_complexity Low_complexity 1 36 0 327 285 38 19 chr12 61412190 61412211 -82870278 - L1MA10 LINE L1 -3 6331 6311 5806 228 39 41 chr12 61412211 61413619 -82868870 - L1ME1 LINE L1 -14 6221 4820 1027 261 88 38 chr12 61413619 61414064 -82868425 + MLT1C LTR MaLR 1 467 0 5806 228 39 41 chr12 61414064 61415370 -82867119 - L1ME1 LINE L1 -1415 4820 3512 23 0 0 29 chr12 61415370 61415384 -82867105 + AT_rich Low_complexity Low_complexity 1 14 -19 3213 112 25 17 chr12 61415384 61415903 -82866586 - L1MA4A LINE L1 -6 6297 5775 23 0 0 29 chr12 61415903 61415922 -82866567 + AT_rich Low_complexity Low_complexity 14 33 0 3987 96 0 2 chr12 61415922 61416475 -82866014 - L1PA12 LINE L1 -1 6167 5616 8559 171 59 5 chr12 61416492 61416945 -82865544 - L1MA4A LINE L1 -535 5768 5341 323 43 0 22 chr12 61416945 61416991 -82865498 + (TTA)n Simple_repeat Simple_repeat 2 46 0 8559 171 59 5 chr12 61416991 61418739 -82863750 - L1MA4A LINE L1 -962 5341 3443 1457 256 50 2 chr12 61418737 61419240 -82863249 - L1ME1 LINE L1 -3393 2822 2296 * 1838 231 93 11 chr12 61419228 61419874 -82862615 - L1ME1 LINE L1 -3994 2402 1704 1594 294 55 14 chr12 61419916 61420484 -82862005 - L1ME1 LINE L1 -5767 629 39 333 141 141 0 chr12 61420488 61420559 -82861930 + MER3 DNA MER1_type 127 207 -2 415 235 41 0 chr12 61420568 61420666 -82861823 + L1ME3A LINE L1 6063 6164 -6 234 0 0 0 chr12 61420747 61420773 -82861716 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 303 28 0 0 chr12 61420772 61420808 -82861681 + (TG)n Simple_repeat Simple_repeat 1 36 0 1995 105 46 3 chr12 61421339 61421624 -82860865 - AluSg SINE Alu -13 297 1 276 170 0 0 chr12 61421647 61421700 -82860789 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 260 322 24 95 chr12 61421912 61422318 -82860171 - L2 LINE L2 -242 3030 2645 2284 111 3 0 chr12 61422403 61422709 -82859780 + AluSc SINE Alu 1 307 -2 182 244 202 25 chr12 61423231 61423350 -82859139 + MIR SINE MIR 66 205 -57 532 282 20 26 chr12 61424498 61424693 -82857796 - MLT1L LTR MaLR 0 615 422 1979 200 131 94 chr12 61424826 61425672 -82856817 - LTR28 LTR ERV1 -13 819 1 381 161 0 0 chr12 61425672 61425734 -82856755 - MLT1L LTR MaLR -406 209 148 840 254 27 14 chr12 61425734 61425954 -82856535 - MER58A DNA MER1_type 0 224 2 266 125 21 21 chr12 61425984 61426032 -82856457 - MLT1L LTR MaLR -342 48 1 252 57 0 0 chr12 61426048 61426083 -82856406 + L1PA13 LINE L1 6014 6048 -115 585 280 127 32 chr12 61426386 61426714 -82855775 - MLT1E2 LTR MaLR -288 336 1 519 274 27 87 chr12 61426739 61427019 -82855470 + HAL1 LINE L1 1406 1668 -839 2017 176 14 6 chr12 61427019 61427378 -82855111 - MLT1A1 LTR MaLR 0 365 4 519 274 27 87 chr12 61427378 61427396 -82855093 + HAL1 LINE L1 1668 1686 -821 796 113 20 33 chr12 61427397 61427548 -82854941 + L1PA13 LINE L1 6014 6162 -1 259 284 209 8 chr12 61427689 61427823 -82854666 + HAL1 LINE L1 1729 1889 -618 436 276 14 55 chr12 61427855 61428000 -82854489 + MIR SINE MIR 117 255 -7 277 333 27 18 chr12 61428123 61428234 -82854255 - L2 LINE L2 -1330 1984 1873 23 0 0 0 chr12 61428241 61428264 -82854225 + AT_rich Low_complexity Low_complexity 1 23 0 2235 75 0 52 chr12 61428638 61428946 -82853543 - AluSp SINE Alu -13 300 9 673 254 176 14 chr12 61429547 61429826 -82852663 + MER5C DNA MER1_type 1 324 0 318 323 61 12 chr12 61429843 61430007 -82852482 + MIR SINE MIR 25 196 -66 224 271 161 42 chr12 61432367 61432485 -82850004 - L2 LINE L2 -1 3312 3181 280 318 35 12 chr12 61432918 61433003 -82849486 - MIR SINE MIR -94 114 28 432 228 110 0 chr12 61433162 61433289 -82849200 - L1ME4a LINE L1 -16 6105 5965 182 167 0 24 chr12 61433380 61433422 -82849067 + (TA)n Simple_repeat Simple_repeat 2 42 0 41 48 0 0 chr12 61433467 61433529 -82848960 + AT_rich Low_complexity Low_complexity 1 62 0 338 275 138 0 chr12 61433589 61433698 -82848791 + MER63 DNA MER1_type 1 750 -86 280 276 40 0 chr12 61433699 61433775 -82848714 + MER63 DNA MER1_type 978 1056 -6 2152 122 3 0 chr12 61433986 61434281 -82848208 - AluSx SINE Alu -16 296 1 327 319 11 0 chr12 61434428 61434522 -82847967 + MIR SINE MIR 45 139 -69 1750 194 73 30 chr12 61434556 61434953 -82847536 - MER74C LTR ERVL 0 460 47 354 287 0 0 chr12 61435716 61435803 -82846686 - L2 LINE L2 -5 3308 3222 190 244 0 22 chr12 61436048 61436093 -82846396 - L2 LINE L2 -59 3213 3170 451 357 124 34 chr12 61436686 61437047 -82845442 + L2 LINE L2 2698 3124 -189 1912 119 0 4 chr12 61437047 61437324 -82845165 - AluSq SINE Alu -3 310 35 451 357 124 34 chr12 61437324 61437532 -82844957 + L2 LINE L2 3124 3312 -1 1157 228 46 53 chr12 61437863 61438258 -82844231 - L1ME2 LINE L1 -8 6156 5765 24 53 0 0 chr12 61439215 61439253 -82843236 + AT_rich Low_complexity Low_complexity 1 38 0 246 292 56 75 chr12 61439650 61439811 -82842678 + MLT1K LTR MaLR 189 346 -242 340 303 23 82 chr12 61440790 61440976 -82841513 - MIR3 SINE MIR -13 195 20 342 313 62 18 chr12 61442797 61442909 -82839580 + L2 LINE L2 3154 3270 -2 182 118 29 0 chr12 61443413 61443447 -82839042 + (TA)n Simple_repeat Simple_repeat 1 35 0 622 121 51 9 chr12 61443472 61443688 -82838801 + (TA)n Simple_repeat Simple_repeat 1 225 0 236 308 145 0 chr12 61443754 61443871 -82838618 + MIR SINE MIR 12 145 -117 12665 93 13 9 chr12 61443877 61446494 -82835995 + L1PA8 LINE L1 3544 6169 -3 369 195 0 0 chr12 61446525 61446602 -82835887 + MIR SINE MIR 137 213 -49 23 0 0 0 chr12 61446957 61446980 -82835509 + AT_rich Low_complexity Low_complexity 1 23 0 709 314 122 16 chr12 61446982 61447352 -82835137 - MLT1J LTR MaLR -100 411 3 1324 344 84 28 chr12 61448071 61449099 -82833390 + L2 LINE L2 1381 2465 -849 1244 238 139 109 chr12 61449168 61449693 -82832796 + MLT1F1 LTR MaLR 2 567 0 21 0 0 0 chr12 61450120 61450141 -82832348 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 61450347 61450376 -82832113 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr12 61450709 61450736 -82831753 + AT_rich Low_complexity Low_complexity 1 27 0 7223 208 48 9 chr12 61451616 61454255 -82828234 - L1MB7 LINE L1 -16 6168 3415 2396 235 32 3 chr12 61454245 61454874 -82827615 + L1 LINE L1 2329 2975 -3171 * 3043 142 32 0 chr12 61454901 61455400 -82827089 - Tigger4(Zombi) DNA MER2_type -1766 965 451 1794 192 14 6 chr12 61455518 61455878 -82826611 - L1PB4 LINE L1 -3 6153 5791 244 132 38 38 chr12 61455901 61455954 -82826535 + L1M3 LINE L1 5747 5799 -381 238 172 141 16 chr12 61455946 61456010 -82826479 + L1P4 LINE L1 5729 5800 -365 * 457 161 8 11 chr12 61456054 61456155 -82826334 - L1MC/D LINE L1 -402 5763 5687 1404 60 0 0 chr12 61456155 61456321 -82826168 + AluY SINE Alu 105 270 -41 2718 121 29 3 chr12 61456321 61456865 -82825624 - L1PB4 LINE L1 -458 5698 5144 942 193 19 5 chr12 61456860 61457072 -82825417 + L1PB4 LINE L1 4908 5122 -1024 * 2530 197 17 23 chr12 61457072 61457555 -82824934 - Tigger4(Zombi) DNA MER2_type -2251 480 1 3822 236 43 14 chr12 61457558 61458523 -82823966 - L1M4 LINE L1 -1949 4695 3692 2376 227 40 49 chr12 61458523 61459215 -82823274 - MER76 LTR ERV -2 686 1 3822 236 43 14 chr12 61459215 61459363 -82823126 - L1M4 LINE L1 -2952 3692 3550 699 226 0 0 chr12 61459370 61459507 -82822982 - L1PA16 LINE L1 -37 6129 5993 6726 172 10 1 chr12 61459520 61461308 -82821181 - L1P5 LINE L1 -374 5777 3976 2167 164 26 31 chr12 61461308 61461868 -82820621 - MLT2A2 LTR ERVL 0 554 1 816 171 0 7 chr12 61461868 61462020 -82820469 - L1M4 LINE L1 -2166 4478 4328 1821 33 0 0 chr12 61462108 61462322 -82820167 + L1P2 LINE L1 5399 5612 -542 * 3206 241 36 55 chr12 61462302 61462631 -82819858 - L1M4 LINE L1 -3124 3520 3186 2280 221 25 51 chr12 61462631 61463224 -82819265 + MER70B LTR ERVL 1 578 0 3206 241 36 55 chr12 61463224 61464335 -82818154 - L1M4 LINE L1 -3458 3186 2141 1816 58 0 0 chr12 61464331 61464554 -82817935 - L1PA7 LINE L1 -409 5745 5523 * 3001 70 2 5 chr12 61464554 61464952 -82817537 + L1PA7 LINE L1 5753 6153 -1 5406 224 55 60 chr12 61464952 61465187 -82817302 - L1M4 LINE L1 -4645 2001 1766 1089 191 90 93 chr12 61465187 61465553 -82816936 - MLT1A1 LTR MaLR 0 365 1 5406 224 55 60 chr12 61465553 61467348 -82815141 - L1M4 LINE L1 -4880 1766 5 33 66 0 0 chr12 61467422 61467483 -82815006 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr12 61467838 61467868 -82814621 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 61469363 61469385 -82813104 + AT_rich Low_complexity Low_complexity 1 22 0 1071 270 85 31 chr12 61469558 61469980 -82812509 + MLT1J2 LTR MaLR 1 445 -5 1364 230 71 26 chr12 61471215 61471594 -82810895 - MSTD LTR MaLR 0 396 1 5911 84 5 44 chr12 61472435 61472833 -82809656 - L1PA13 LINE L1 -13 6150 5738 199 54 54 0 chr12 61472833 61472870 -82809619 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 5911 84 5 44 chr12 61472870 61473352 -82809137 - L1PA13 LINE L1 -425 5738 5305 * 12398 171 37 21 chr12 61473323 61475023 -82807466 - L1PA13 LINE L1 -1251 4895 3140 255 31 0 0 chr12 61475023 61475055 -82807434 + (TG)n Simple_repeat Simple_repeat 1 32 0 12398 171 37 21 chr12 61475055 61475889 -82806600 - L1PA13 LINE L1 -3006 3140 2321 341 131 0 0 chr12 61475890 61475951 -82806538 + L1PA13 LINE L1 2265 2325 -3821 33 25 0 0 chr12 61476301 61476341 -82806148 + AT_rich Low_complexity Low_complexity 1 40 0 778 317 27 5 chr12 61476410 61476631 -82805858 + MIR SINE MIR 30 255 -7 952 268 35 59 chr12 61476946 61477319 -82805170 + L2 LINE L2 2950 3313 0 231 255 0 0 chr12 61478263 61478314 -82804175 - MIR3 SINE MIR -5 203 153 193 362 11 21 chr12 61478345 61478439 -82804050 - L2 LINE L2 -1 3312 3220 24 53 0 0 chr12 61479018 61479056 -82803433 + AT_rich Low_complexity Low_complexity 1 38 0 304 306 72 33 chr12 61479316 61479496 -82802993 + L2 LINE L2 3120 3306 -7 1305 190 12 4 chr12 61479783 61480025 -82802464 - AluJo SINE Alu -32 280 37 411 295 54 8 chr12 61481472 61481601 -82800888 - MIR3 SINE MIR -33 175 41 300 292 42 21 chr12 61482567 61482711 -82799778 + L3b LINE CR1 1107 1253 -330 3055 134 17 8 chr12 61484536 61485191 -82797298 + L1PA15 LINE L1 5119 5777 -388 270 56 0 0 chr12 61485225 61485261 -82797228 + (TG)n Simple_repeat Simple_repeat 2 37 0 243 106 106 0 chr12 61485262 61485309 -82797180 - MER73 LTR ERVL -564 80 29 270 265 24 0 chr12 61485330 61485413 -82797076 - L1MC4 LINE L1 -1339 6703 6619 * 2045 146 3 49 chr12 61485408 61485778 -82796711 + L1PA15 LINE L1 5792 6144 -21 301 308 96 0 chr12 61486625 61486729 -82795760 + L2 LINE L2 3151 3264 -8 3236 152 36 25 chr12 61486877 61487125 -82795364 - MER73 LTR ERVL 0 644 400 2076 134 0 0 chr12 61487125 61487424 -82795065 + AluSx SINE Alu 1 299 -13 3236 152 36 25 chr12 61487424 61487812 -82794677 - MER73 LTR ERVL -244 400 1 26 50 0 0 chr12 61487942 61487982 -82794507 + AT_rich Low_complexity Low_complexity 1 40 0 26 30 0 0 chr12 61488032 61488065 -82794424 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr12 61488143 61488172 -82794317 + AT_rich Low_complexity Low_complexity 1 29 0 757 277 84 44 chr12 61488173 61488868 -82793621 - L1MC5 LINE L1 -86 7875 7261 588 252 46 118 chr12 61488888 61489448 -82793041 - L1MC4a LINE L1 -726 7235 6710 23 78 0 0 chr12 61489537 61489588 -82792901 + AT_rich Low_complexity Low_complexity 1 51 0 4099 164 26 15 chr12 61489593 61490405 -82792084 - L1MA4A LINE L1 0 6303 5483 372 161 167 81 chr12 61490584 61490758 -82791731 + MER69 DNA AcHobo 2331 2519 -7 626 296 93 59 chr12 61491580 61492059 -82790430 - MLT1J LTR MaLR 0 452 1 31 0 0 0 chr12 61493541 61493572 -82788917 + AT_rich Low_complexity Low_complexity 1 31 0 697 293 40 0 chr12 61494288 61494522 -82787967 + MIR SINE MIR 2 254 -8 1061 283 29 3 chr12 61495126 61495433 -82787056 - LTR16A LTR ERVL -118 332 18 6817 45 30 1 chr12 61495594 61496568 -82785921 + L1PA6 LINE L1 5150 6148 -6 601 289 106 18 chr12 61497293 61497566 -82784923 + LTR16C LTR ERVL 182 478 -13 204 40 0 0 chr12 61497585 61497610 -82784879 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 387 0 0 0 chr12 61497778 61497821 -82784668 + (TG)n Simple_repeat Simple_repeat 2 44 0 214 191 16 16 chr12 61498791 61498854 -82783635 + CT-rich Low_complexity Low_complexity 4 66 0 298 152 0 0 chr12 61499682 61499728 -82782761 - L2 LINE L2 -4 3309 3264 3508 189 29 57 chr12 61500188 61501024 -82781465 - L1MA10 LINE L1 0 6334 5523 * 4141 191 28 35 chr12 61501022 61501106 -82781383 - L1MA10 LINE L1 -1295 4851 4768 2473 128 5 5 chr12 61501106 61501480 -82781009 - THE1C LTR MaLR 0 375 2 10019 123 39 5 chr12 61501481 61503008 -82779481 - THE1C-int LTR MaLR 0 1580 1 2418 129 14 3 chr12 61503008 61503379 -82779110 - THE1C LTR MaLR 0 375 1 4141 191 28 35 chr12 61503379 61503444 -82779045 - L1MA10 LINE L1 -1377 4769 4705 1398 184 56 28 chr12 61503444 61503732 -82778757 - AluJo SINE Alu -16 296 1 4141 191 28 35 chr12 61503732 61503800 -82778689 - L1MA10 LINE L1 -1441 4705 4638 6286 71 14 51 chr12 61503800 61505109 -82777380 + L1PA10 LINE L1 4894 6168 0 4141 191 28 35 chr12 61505109 61505878 -82776611 - L1MA10 LINE L1 -1508 4638 3867 503 164 77 0 chr12 61505881 61505985 -82776504 - L1MB1 LINE L1 -126 6042 5931 26 88 0 0 chr12 61506084 61506152 -82776337 + AT_rich Low_complexity Low_complexity 1 68 0 27 49 0 0 chr12 61506853 61506894 -82775595 + AT_rich Low_complexity Low_complexity 1 41 0 27 81 0 0 chr12 61508110 61508172 -82774317 + AT_rich Low_complexity Low_complexity 1 62 0 195 42 0 0 chr12 61509061 61509085 -82773404 + (TA)n Simple_repeat Simple_repeat 1 24 0 240 291 0 76 chr12 61509261 61509340 -82773149 - MER91B DNA MER1_type -116 74 2 380 217 36 0 chr12 61512420 61512503 -82769986 + L2 LINE L2 3187 3272 0 2284 249 143 18 chr12 61512560 61513356 -82769133 + L2 LINE L2 2009 2904 -410 666 247 200 4 chr12 61513351 61513586 -82768903 + L2 LINE L2 3033 3313 0 * 349 132 0 73 chr12 61513599 61513667 -82768822 - L2 LINE L2 0 3313 3251 2201 147 8 8 chr12 61514060 61514428 -82768061 - L1PB4 LINE L1 0 6156 5789 308 209 11 0 chr12 61514464 61514555 -82767934 + (TA)n Simple_repeat Simple_repeat 2 93 0 1931 133 56 3 chr12 61514573 61514895 -82767594 - L1PB4 LINE L1 -379 5777 5439 1656 181 35 0 chr12 61514895 61515183 -82767306 - AluJo SINE Alu -14 298 1 396 281 0 33 chr12 61515527 61515648 -82766841 + L2 LINE L2 3197 3313 0 28 0 0 0 chr12 61515762 61515790 -82766699 + AT_rich Low_complexity Low_complexity 1 28 0 671 209 15 0 chr12 61518269 61518403 -82764086 + LTR52 LTR ERVL 284 419 -2 1035 201 140 7 chr12 61518417 61518710 -82763779 - L1MC4 LINE L1 -234 7808 7477 225 341 79 24 chr12 61519222 61519386 -82763103 + L2 LINE L2 1661 1833 -1481 216 305 76 59 chr12 61520149 61520267 -82762222 - L2 LINE L2 -1 3312 3193 671 270 10 73 chr12 61520365 61520665 -82761824 - MER97c DNA MER1_type? 0 1090 810 21 0 0 0 chr12 61521802 61521823 -82760666 + AT_rich Low_complexity Low_complexity 1 21 0 1892 184 30 30 chr12 61521912 61522469 -82760020 + MLT2A2 LTR ERVL 1 554 0 335 69 29 78 chr12 61522661 61522763 -82759726 + (TAGA)n Simple_repeat Simple_repeat 3 99 0 180 0 0 0 chr12 61524769 61524789 -82757700 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 568 201 74 5 chr12 61524892 61525081 -82757408 - MER97b DNA MER1_type? -194 859 658 240 294 165 0 chr12 61525474 61525559 -82756930 - L2 LINE L2 -6 3266 3168 691 121 0 0 chr12 61525810 61525909 -82756580 + AluSg SINE Alu 1 99 -211 22 0 0 0 chr12 61526197 61526219 -82756270 + AT_rich Low_complexity Low_complexity 1 22 0 232 245 0 0 chr12 61527197 61527246 -82755243 + (CAT)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr12 61528805 61528827 -82753662 + AT_rich Low_complexity Low_complexity 1 22 0 1281 63 6 6 chr12 61528842 61529016 -82753473 + L1PA5 LINE L1 5980 6153 -1 2146 253 56 18 chr12 61529169 61529893 -82752596 - L1ME1 LINE L1 -17 6149 5425 361 278 71 71 chr12 61530119 61530400 -82752089 + L1MDb LINE L1 1006 1289 -5107 350 285 6 101 chr12 61530802 61530981 -82751508 + MIR SINE MIR 86 247 -15 192 357 95 0 chr12 61532215 61532299 -82750190 - L2 LINE L2 -19 3253 3162 195 267 0 22 chr12 61532359 61532404 -82750085 + MER5B DNA MER1_type 64 107 -71 330 302 42 10 chr12 61532435 61532531 -82749958 + L2 LINE L2 3170 3268 -4 * 1098 295 53 37 chr12 61532524 61533060 -82749429 - L2 LINE L2 0 3313 2778 38351 84 7 10 chr12 61534083 61540250 -82742239 + L1PA6 LINE L1 11 6154 0 22 0 0 0 chr12 61540251 61540273 -82742216 + AT_rich Low_complexity Low_complexity 1 22 0 258 32 0 0 chr12 61540493 61540524 -82741965 + (TG)n Simple_repeat Simple_repeat 2 32 0 268 298 13 26 chr12 61540742 61540893 -82741596 + GA-rich Low_complexity Low_complexity 2 150 0 21 82 0 0 chr12 61541440 61541489 -82741000 + AT_rich Low_complexity Low_complexity 1 49 0 10495 133 23 21 chr12 61541508 61543248 -82739241 - L1P LINE L1 -4393 1753 11 34 55 0 0 chr12 61543586 61543641 -82738848 + AT_rich Low_complexity Low_complexity 1 55 0 2269 119 0 0 chr12 61543983 61544277 -82738212 + AluSg SINE Alu 2 295 -15 2409 77 3 0 chr12 61544377 61544676 -82737813 + AluY SINE Alu 1 300 -11 22 0 0 0 chr12 61545299 61545321 -82737168 + AT_rich Low_complexity Low_complexity 1 22 0 535 148 50 0 chr12 61545326 61545427 -82737062 - L1MA4 LINE L1 -1233 4913 4808 5323 143 28 10 chr12 61545427 61546806 -82735683 + L1MA4 LINE L1 4898 6300 0 756 217 112 71 chr12 61547171 61547581 -82734908 - L1MC5 LINE L1 -625 7336 6910 5381 135 13 14 chr12 61547655 61548174 -82734315 - L1PA15 LINE L1 -2 6163 5645 1889 119 80 44 chr12 61548174 61548536 -82733953 - THE1C LTR MaLR 0 375 1 5381 135 13 14 chr12 61548536 61548630 -82733859 - L1PA15 LINE L1 -520 5645 5552 4363 173 60 45 chr12 61548630 61549686 -82732803 - MER11C LTR ERVK 0 1071 1 5381 135 13 14 chr12 61549686 61550774 -82731715 - L1PA15 LINE L1 -613 5552 4470 251 257 153 15 chr12 61550843 61551045 -82731444 + L1MC5 LINE L1 7474 7703 -258 2428 103 3 0 chr12 61551239 61551550 -82730939 - AluSx SINE Alu 0 312 1 1185 255 101 47 chr12 61551555 61551689 -82730800 - HAL1 LINE L1 -417 2090 1965 2306 156 15 0 chr12 61551689 61552086 -82730403 + MER57A LTR ERV1 1 403 0 1185 255 101 47 chr12 61552086 61552548 -82729941 - HAL1 LINE L1 -542 1965 1462 504 317 32 69 chr12 61552745 61552806 -82729683 - HAL1 LINE L1 -1608 899 837 1798 157 11 0 chr12 61552806 61553107 -82729382 - AluSq SINE Alu 0 304 1 504 317 32 69 chr12 61553107 61553419 -82729070 - HAL1 LINE L1 -1670 837 539 2066 117 0 7 chr12 61553469 61553777 -82728712 - AluSg SINE Alu 0 306 1 28 48 0 0 chr12 61555120 61555162 -82727327 + AT_rich Low_complexity Low_complexity 1 42 0 280 237 0 13 chr12 61555604 61555680 -82726809 - LTR33A LTR ERVL 0 523 449 336 111 0 0 chr12 61556108 61556162 -82726327 + (TC)n Simple_repeat Simple_repeat 1 54 0 200 402 76 24 chr12 61557086 61557335 -82725154 - L2 LINE L2 -13 3259 2998 561 345 171 21 chr12 61557420 61558334 -82724155 - L2 LINE L2 -550 2764 1665 204 40 0 0 chr12 61558334 61558359 -82724130 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 561 345 171 21 chr12 61558359 61558516 -82723973 - L2 LINE L2 -1649 1665 1533 975 302 69 16 chr12 61560408 61560971 -82721518 + L1MC4a LINE L1 5379 5971 -1837 25 0 0 0 chr12 61561126 61561151 -82721338 + AT_rich Low_complexity Low_complexity 1 25 0 286 341 0 0 chr12 61561188 61561270 -82721219 + L2 LINE L2 3186 3267 -5 755 253 11 11 chr12 61561774 61561952 -82720537 - MER5B DNA MER1_type 0 178 1 400 309 59 36 chr12 61562341 61562561 -82719928 + L1ME3A LINE L1 5727 5951 -219 10325 225 22 45 chr12 61563578 61566410 -82716079 + L1M2 LINE L1 2 2736 -4112 7602 29 0 0 chr12 61566410 61567350 -82715139 + L1PA4 LINE L1 5213 6152 -3 10325 225 22 45 chr12 61567350 61568012 -82714477 + L1M2 LINE L1 2736 3412 -3436 182 62 31 0 chr12 61568034 61568066 -82714423 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 3048 175 18 5 chr12 61568066 61568796 -82713693 + L1MA4A LINE L1 5481 6280 -23 21 0 0 0 chr12 61568802 61568823 -82713666 + AT_rich Low_complexity Low_complexity 1 21 0 275 398 63 49 chr12 61569031 61569285 -82713204 - L2 LINE L2 -16 3256 3007 2317 62 48 0 chr12 61569285 61569574 -82712915 + AluY SINE Alu 1 303 -8 275 398 63 49 chr12 61569574 61569586 -82712903 - L2 LINE L2 -265 3007 2997 2360 89 0 13 chr12 61569586 61569900 -82712589 + AluY SINE Alu 1 310 -1 275 398 63 49 chr12 61569900 61570079 -82712410 - L2 LINE L2 -275 2997 2804 275 344 158 5 chr12 61570272 61570487 -82712002 - L2 LINE L2 -517 2797 2550 3491 154 57 0 chr12 61572585 61573168 -82709321 + LTR31 LTR ERV1 1 616 -3 185 255 0 20 chr12 61573266 61573317 -82709172 - L3b LINE CR1 -341 1242 1193 322 320 0 10 chr12 61573486 61573589 -82708900 + MIR SINE MIR 28 129 -133 1813 236 31 49 chr12 61573589 61574160 -82708329 + MER74B LTR ERVL 52 612 -10 1988 142 0 4 chr12 61574448 61574729 -82707760 + AluSx SINE Alu 3 282 -30 378 0 0 0 chr12 61574733 61574775 -82707714 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 218 229 0 21 chr12 61575484 61575532 -82706957 - MER5A DNA MER1_type 0 189 143 5147 186 68 75 chr12 61575533 61577660 -82704829 + L1MDa LINE L1 1 2257 -4283 2290 98 0 7 chr12 61577663 61577969 -82704520 + AluY SINE Alu 1 304 -7 451 197 0 0 chr12 61577970 61578041 -82704448 - MER5A DNA MER1_type -56 133 63 432 42 0 56 chr12 61578056 61578068 -82704421 + L1P LINE L1 5315 5326 -805 2466 51 3 0 chr12 61578068 61578379 -82704110 - L1PA8 LINE L1 0 6172 5861 432 42 0 56 chr12 61578379 61578438 -82704051 + L1P LINE L1 5326 5382 -749 381 197 28 0 chr12 61578438 61578509 -82703980 - MER5A DNA MER1_type -113 76 4 334 243 85 90 chr12 61578779 61578956 -82703533 + MER5B DNA MER1_type 1 176 -2 478 295 84 37 chr12 61579123 61579313 -82703176 - MIR SINE MIR -13 249 51 2850 7 0 0 chr12 61579808 61580118 -82702371 + AluYa5 SINE Alu 1 310 -1 211 156 0 44 chr12 61580642 61580687 -82701802 + (TAG)n Simple_repeat Simple_repeat 2 44 0 245 283 35 19 chr12 61581249 61581346 -82701143 + MIR SINE MIR 52 148 -60 2270 76 7 0 chr12 61581470 61581761 -82700728 + AluSc SINE Alu 3 295 -14 2129 189 19 17 chr12 61582422 61582485 -82700004 - MSTB LTR MaLR -6 420 359 2358 80 10 0 chr12 61582485 61582784 -82699705 + AluSp SINE Alu 1 302 -11 2129 189 19 17 chr12 61582784 61583139 -82699350 - MSTB LTR MaLR -67 359 1 22 56 0 0 chr12 61583368 61583404 -82699085 + AT_rich Low_complexity Low_complexity 1 36 0 2434 97 33 22 chr12 61583623 61583983 -82698506 + THE1B LTR MaLR 1 364 0 423 310 65 0 chr12 61583983 61584138 -82698351 - MIR SINE MIR -60 202 38 1234 50 0 6 chr12 61584241 61584438 -82698051 + L1PA7 LINE L1 5973 6168 0 285 228 20 19 chr12 61584914 61585076 -82697413 + GA-rich Low_complexity Low_complexity 1 162 0 382 278 93 0 chr12 61585200 61585308 -82697181 + L2 LINE L2 3195 3312 -1 507 196 39 10 chr12 61585795 61585897 -82696592 - MIR SINE MIR -2 260 156 550 298 53 0 chr12 61585984 61586172 -82696317 + MER58A DNA MER1_type 27 224 0 390 320 41 7 chr12 61586364 61586511 -82695978 + MIR3 SINE MIR 32 183 -25 7191 180 127 16 chr12 61587692 61589271 -82693218 + MER52A LTR ERV1 1 1755 0 1567 101 0 0 chr12 61589488 61589707 -82692782 + THE1A LTR MaLR 1 219 -136 9602 113 17 11 chr12 61589708 61591198 -82691291 + THE1A-int LTR MaLR 82 1580 0 2764 87 0 0 chr12 61591198 61591553 -82690936 + THE1A LTR MaLR 1 355 0 497 298 75 24 chr12 61593143 61593516 -82688973 - L1ME4a LINE L1 -34 6087 5696 182 244 103 13 chr12 61594935 61595013 -82687476 - MIR3 SINE MIR -27 181 97 264 327 121 12 chr12 61596807 61596972 -82685517 - MIR3 SINE MIR -21 187 5 421 235 0 31 chr12 61597018 61597116 -82685373 + MIR3 SINE MIR 108 202 -6 308 310 115 40 chr12 61598471 61598671 -82683818 + MIR SINE MIR 48 262 0 1936 147 3 11 chr12 61598991 61599310 -82683179 + AluSx SINE Alu 1 317 0 288 284 111 68 chr12 61599541 61599703 -82682786 + L2 LINE L2 3007 3175 -97 21 0 0 0 chr12 61600139 61600160 -82682329 + AT_rich Low_complexity Low_complexity 1 21 0 230 260 57 102 chr12 61600291 61600468 -82682021 - L2 LINE L2 -2 3270 3102 448 293 153 0 chr12 61600530 61600687 -82681802 + MER5A DNA MER1_type 9 189 0 355 241 107 37 chr12 61600725 61600875 -82681614 + MER5B DNA MER1_type 20 189 0 215 244 0 0 chr12 61601111 61601156 -82681333 - L2 LINE L2 -8 3305 3261 266 320 97 0 chr12 61601171 61601274 -82681215 - L2 LINE L2 0 3313 3201 784 243 53 70 chr12 61601579 61601879 -82680610 - MLT1I LTR MaLR -15 394 100 414 0 0 0 chr12 61606679 61606725 -82675764 + (TG)n Simple_repeat Simple_repeat 2 47 0 2300 67 0 0 chr12 61606725 61607009 -82675480 - AluY SINE Alu -27 284 1 185 271 21 0 chr12 61607141 61607189 -82675300 - L2 LINE L2 0 3272 3224 * 441 248 0 26 chr12 61607158 61607275 -82675214 - MIR SINE MIR -12 250 137 2132 164 13 29 chr12 61607291 61607747 -82674742 - L1MA7 LINE L1 -6 6173 5725 10441 223 57 36 chr12 61607747 61612254 -82670235 - L1MA7 LINE L1 -1510 4524 302 286 331 74 7 chr12 61612513 61612661 -82669828 - L1M3a LINE L1 -5251 704 547 1179 328 11 37 chr12 61612830 61613291 -82669198 - L1M3a LINE L1 -5504 451 3 513 338 0 0 chr12 61613312 61613448 -82669041 - MIR SINE MIR -126 136 1 430 304 45 83 chr12 61613660 61613926 -82668563 - L2 LINE L2 -69 3203 2948 218 361 32 19 chr12 61613986 61614144 -82668345 - L2 LINE L2 -448 2866 2707 422 222 185 0 chr12 61614773 61614881 -82667608 - L2 LINE L2 0 3313 3186 201 322 69 11 chr12 61615115 61615202 -82667287 + MIR SINE MIR 60 151 -57 693 274 55 53 chr12 61615321 61615351 -82667138 + HsTC2 DNA Tc2 530 558 -1340 918 286 14 0 chr12 61615351 61615571 -82666918 - MER58A DNA MER1_type -1 223 1 693 274 55 53 chr12 61615571 61615901 -82666588 + HsTC2 DNA Tc2 558 891 -1007 2146 90 4 0 chr12 61615914 61616191 -82666298 - AluSc SINE Alu -9 300 23 519 284 138 36 chr12 61616753 61616978 -82665511 - MIR SINE MIR -2 260 13 654 332 44 0 chr12 61617221 61617426 -82665063 + MIR SINE MIR 21 234 -28 22 35 0 0 chr12 61618605 61618634 -82663855 + AT_rich Low_complexity Low_complexity 1 29 0 227 111 0 44 chr12 61618696 61618741 -82663748 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 1744 194 22 78 chr12 61618837 61619301 -82663188 + MSTB2 LTR MaLR 20 457 0 196 226 48 16 chr12 61619813 61619875 -82662614 - L2 LINE L2 -264 3008 2945 278 136 0 0 chr12 61620834 61620878 -82661611 - L1MA3 LINE L1 0 6305 6262 396 301 34 30 chr12 61621039 61621270 -82661219 - LTR16A1 LTR ERVL -22 469 201 213 245 20 88 chr12 61621429 61621531 -82660958 + GA-rich Low_complexity Low_complexity 1 95 0 328 256 104 25 chr12 61622793 61623057 -82659432 - L1MC/D LINE L1 -330 5791 5609 204 67 0 0 chr12 61623057 61623087 -82659402 + (TTTAA)n Simple_repeat Simple_repeat 2 31 0 328 256 104 25 chr12 61623087 61623104 -82659385 - L1MC/D LINE L1 -512 5609 5595 1885 129 48 36 chr12 61623740 61624072 -82658417 - MSTB1 LTR MaLR 0 432 97 1397 129 9 9 chr12 61624074 61624284 -82658205 - THE1A LTR MaLR -1 354 145 227 404 0 0 chr12 61624378 61624492 -82657997 - L1M4 LINE L1 -2012 4134 4021 321 82 0 0 chr12 61624832 61624881 -82657608 + (GA)n Simple_repeat Simple_repeat 2 50 0 362 247 99 19 chr12 61625422 61625584 -82656905 + MIR SINE MIR 88 262 0 314 282 154 34 chr12 61625602 61625751 -82656738 - MER5B DNA MER1_type -1 177 11 267 31 0 0 chr12 61625829 61625861 -82656628 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 575 317 108 42 chr12 61625931 61626533 -82655956 - L3 LINE CR1 -309 1268 588 198 0 0 0 chr12 61626538 61626560 -82655929 + (TTG)n Simple_repeat Simple_repeat 3 24 0 536 290 32 83 chr12 61626576 61626828 -82655661 + MIR SINE MIR 19 257 -5 432 347 6 6 chr12 61626861 61627031 -82655458 + MIR SINE MIR 67 236 -26 311 281 133 16 chr12 61628010 61628138 -82654351 + MER5A DNA MER1_type 43 185 -4 237 379 49 24 chr12 61628134 61628486 -82654003 + L2 LINE L2 2665 3024 -248 * 330 316 86 0 chr12 61628546 61628663 -82653826 - L2 LINE L2 0 3313 3187 183 352 0 28 chr12 61628703 61628774 -82653715 + L2 LINE L2 3096 3164 -108 184 237 134 52 chr12 61629320 61629417 -82653072 - L3 LINE CR1 -611 966 862 257 298 0 0 chr12 61629676 61629733 -82652756 + L2 LINE L2 3247 3303 -10 200 208 0 21 chr12 61630148 61630196 -82652293 + CT-rich Low_complexity Low_complexity 6 52 0 2126 113 0 3 chr12 61630903 61631218 -82651271 + AluSx SINE Alu 1 314 0 250 284 88 14 chr12 61631219 61631367 -82651122 + MIR SINE MIR 79 237 -25 1121 298 115 24 chr12 61631445 61631960 -82650529 - L2 LINE L2 0 3313 2685 2346 60 0 3 chr12 61631960 61632245 -82650244 - AluY SINE Alu -11 300 17 1121 298 115 24 chr12 61632245 61632504 -82649985 - L2 LINE L2 -628 2685 2451 575 254 7 7 chr12 61632897 61633035 -82649454 + MIR SINE MIR 47 184 -78 2707 152 33 2 chr12 61633467 61633920 -82648569 - MLT1C LTR MaLR 0 467 1 26 0 0 0 chr12 61634485 61634511 -82647978 + AT_rich Low_complexity Low_complexity 1 26 0 418 291 56 97 chr12 61635058 61635377 -82647112 - L2 LINE L2 0 3272 2967 672 48 0 0 chr12 61635997 61636081 -82646408 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 2224 87 0 0 chr12 61636084 61636359 -82646130 - AluSc SINE Alu -32 277 3 1256 275 144 13 chr12 61636571 61637401 -82645088 - L2 LINE L2 -3 3310 2373 29 0 0 0 chr12 61637588 61637617 -82644872 + AT_rich Low_complexity Low_complexity 1 29 0 183 358 63 0 chr12 61638416 61638511 -82643978 + MIR SINE MIR 156 256 -6 619 189 7 7 chr12 61638686 61638839 -82643650 + GA-rich Low_complexity Low_complexity 2 154 0 528 335 156 18 chr12 61638957 61639362 -82643127 - L1M4 LINE L1 -2945 3201 2853 3238 55 2 5 chr12 61639362 61639784 -82642705 - L1PA7 LINE L1 0 6154 5734 528 335 156 18 chr12 61639784 61640226 -82642263 - L1M4 LINE L1 -3293 2853 2237 2511 74 0 0 chr12 61640716 61641027 -82641462 - AluY SINE Alu 0 311 1 368 266 202 14 chr12 61641075 61641293 -82641196 - HAL1 LINE L1 -878 1629 1371 2279 74 3 0 chr12 61641848 61642131 -82640358 - AluY SINE Alu 0 311 28 314 288 115 14 chr12 61642461 61642600 -82639889 + L2 LINE L2 3159 3311 -2 309 270 40 10 chr12 61644150 61644250 -82638239 + MLT1J2 LTR MaLR 1 103 -347 638 258 131 49 chr12 61644292 61644536 -82637953 + MLT1J2 LTR MaLR 181 444 -6 471 283 33 57 chr12 61644808 61645020 -82637469 + L2 LINE L2 3107 3313 0 476 357 77 3 chr12 61645762 61646073 -82636416 + L2 LINE L2 2514 2847 -467 1072 237 61 61 chr12 61646090 61646583 -82635906 - L1MA9 LINE L1 -38 6274 5782 313 241 0 46 chr12 61646611 61646698 -82635791 + L1MC4 LINE L1 6613 6695 -1347 816 180 37 0 chr12 61646701 61646862 -82635627 - L1MA9 LINE L1 -519 5793 5627 236 356 48 32 chr12 61646862 61647050 -82635439 + L2 LINE L2 2831 3021 -292 2254 72 48 3 chr12 61647234 61647527 -82634962 + AluY SINE Alu 1 306 -5 473 370 25 38 chr12 61648907 61649464 -82633025 + ERVL LTR ERVL 4776 5325 -439 475 266 103 34 chr12 61649736 61650001 -82632488 + LTR16A LTR ERVL 133 408 -42 345 352 41 0 chr12 61650037 61650182 -82632307 + MIR SINE MIR 106 256 -6 1073 252 28 3 chr12 61651032 61651322 -82631167 + L1MC4 LINE L1 6772 7068 -974 798 250 29 58 chr12 61651343 61651755 -82630734 - L1M4 LINE L1 -1070 5076 4677 299 320 86 17 chr12 61651723 61651957 -82630532 - L1ME LINE L1 -5710 360 111 * 228 313 0 61 chr12 61653842 61653941 -82628548 + MIR SINE MIR 110 202 -60 1808 166 24 0 chr12 61654740 61654866 -82627623 + AluJo SINE Alu 1 122 -190 234 0 0 0 chr12 61654866 61654892 -82627597 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1808 166 24 0 chr12 61654892 61655054 -82627435 + AluJo SINE Alu 122 296 -16 279 329 82 41 chr12 61655596 61655742 -82626747 + MER5A DNA MER1_type 36 187 -2 291 218 0 0 chr12 61656698 61656799 -82625690 + (TG)n Simple_repeat Simple_repeat 2 102 0 260 200 12 0 chr12 61656800 61656880 -82625609 + CT-rich Low_complexity Low_complexity 2 82 0 1923 231 24 51 chr12 61658325 61658858 -82623631 - LTR40a LTR ERVL 0 519 1 380 311 45 15 chr12 61658945 61659077 -82623412 + L2 LINE L2 3137 3272 0 275 297 219 7 chr12 61659922 61660077 -82622412 + MIR SINE MIR 25 212 -50 239 254 68 0 chr12 61660823 61660882 -82621607 + L2 LINE L2 3246 3308 -5 192 228 0 0 chr12 61660910 61660967 -82621522 + GA-rich Low_complexity Low_complexity 4 60 0 296 230 16 20 chr12 61661015 61661220 -82621269 + GA-rich Low_complexity Low_complexity 1 204 0 6110 127 25 17 chr12 61661452 61662413 -82620076 + LTR5 LTR ERVK 1 969 0 228 203 47 0 chr12 61663365 61663429 -82619060 - AluJ/monomer SINE Alu 0 301 235 681 207 0 0 chr12 61663459 61663628 -82618861 - FLAM_A SINE Alu 0 171 3 260 298 0 0 chr12 61665191 61665248 -82617241 + L2 LINE L2 3247 3303 -10 200 208 0 21 chr12 61665662 61665710 -82616779 + CT-rich Low_complexity Low_complexity 6 52 0 2138 113 0 3 chr12 61666417 61666732 -82615757 + AluSx SINE Alu 1 314 0 246 284 88 14 chr12 61666733 61666881 -82615608 + MIR SINE MIR 79 237 -25 1114 319 149 4 chr12 61666959 61667464 -82615025 - L2 LINE L2 0 3313 2720 2363 77 10 0 chr12 61667473 61667770 -82614719 - AluY SINE Alu -11 300 1 310 266 202 14 chr12 61667818 61668036 -82614453 - HAL1 LINE L1 -878 1629 1371 2295 74 3 0 chr12 61668591 61668874 -82613615 - AluY SINE Alu 0 311 28 307 288 115 14 chr12 61669204 61669343 -82613146 + L2 LINE L2 3159 3311 -2 275 270 40 10 chr12 61670894 61670994 -82611495 + MLT1J2 LTR MaLR 1 103 -347 569 266 149 14 chr12 61671066 61671280 -82611209 + MLT1J2 LTR MaLR 202 444 -6 471 283 33 57 chr12 61671552 61671764 -82610725 + L2 LINE L2 3107 3313 0 476 357 77 3 chr12 61672506 61672817 -82609672 + L2 LINE L2 2514 2847 -467 1325 223 57 59 chr12 61672834 61673328 -82609161 - L1MA9 LINE L1 -38 6274 5782 327 315 0 0 chr12 61673352 61673441 -82609048 - L1MC4 LINE L1 -1340 6702 6614 816 180 37 0 chr12 61673446 61673607 -82608882 - L1MA9 LINE L1 -519 5793 5627 216 331 20 40 chr12 61673607 61673755 -82608734 + L2 LINE L2 2831 2975 -338 220 343 107 37 chr12 61673899 61674115 -82608374 - MIR SINE MIR -11 251 21 191 237 0 0 chr12 61674272 61674310 -82608179 - L2 LINE L2 -22 3291 3254 284 198 149 25 chr12 61675093 61675214 -82607275 - L2 LINE L2 -63 3250 3115 231 292 75 17 chr12 61675297 61675417 -82607072 + MIR SINE MIR 119 245 -17 1034 49 63 7 chr12 61676240 61676383 -82606106 - L1PA8 LINE L1 -1 6171 6021 2350 107 0 3 chr12 61676745 61677055 -82605434 - AluSg SINE Alu -1 309 1 232 268 21 103 chr12 61679118 61679215 -82603274 - MIR SINE MIR -78 130 42 213 333 0 0 chr12 61679483 61679549 -82602940 + CT-rich Low_complexity Low_complexity 3 68 0 211 309 62 0 chr12 61680280 61680361 -82602128 + L2 LINE L2 3187 3272 0 1722 203 3 42 chr12 61681810 61682190 -82600299 - MLT1A1 LTR MaLR 0 365 1 188 173 39 39 chr12 61682242 61682294 -82600195 - MIR SINE MIR -140 122 71 2343 227 32 43 chr12 61682763 61683394 -82599095 - MLT1E3 LTR MaLR 0 624 1 3094 149 2 2 chr12 61683557 61684041 -82598448 - MER1A DNA MER1_type 0 529 46 234 191 0 0 chr12 61684057 61684104 -82598385 + Charlie3 DNA MER1_type 1 47 -2663 2464 168 9 16 chr12 61684257 61684692 -82597797 - MSTB1 LTR MaLR 0 432 1 537 309 0 0 chr12 61685107 61685243 -82597246 + MIR SINE MIR 9 144 -118 1066 173 30 38 chr12 61685257 61685405 -82597084 + MER46A DNA MER2_type 2 149 -2582 1039 266 4 0 chr12 61685405 61685642 -82596847 + MER8 DNA MER2_type 2 239 0 1066 173 30 38 chr12 61685642 61685730 -82596759 + MER46A DNA MER2_type 149 236 0 185 233 33 17 chr12 61685730 61685790 -82596699 + MIR SINE MIR 156 216 -46 2620 240 56 124 chr12 61686945 61688256 -82594233 - MLT1E3-int LTR MaLR -148 1223 3 1536 226 58 35 chr12 61688256 61688675 -82593814 - MLT1E3 LTR MaLR -11 494 61 411 21 0 0 chr12 61688675 61688723 -82593766 + (CATAT)n Simple_repeat Simple_repeat 2 49 0 1536 226 58 35 chr12 61688723 61688786 -82593703 - MLT1E3 LTR MaLR -444 61 1 316 272 132 0 chr12 61688788 61688902 -82593587 - MIR SINE MIR -71 191 63 277 247 75 86 chr12 61689899 61689978 -82592511 - L1ME4a LINE L1 -225 5896 5818 2154 110 0 0 chr12 61689978 61690268 -82592221 - AluSc SINE Alu 0 309 20 277 247 75 86 chr12 61690268 61690362 -82592127 - L1ME4a LINE L1 -303 5818 5725 282 159 0 0 chr12 61691604 61691648 -82590841 + MIR SINE MIR 210 253 -9 5758 100 18 31 chr12 61691652 61692122 -82590367 + L1PA10 LINE L1 4906 5381 -787 2187 101 0 7 chr12 61692122 61692410 -82590079 + AluSc SINE Alu 23 308 -1 5758 100 18 31 chr12 61692410 61693204 -82589285 + L1PA10 LINE L1 5381 6152 -16 346 337 160 0 chr12 61694435 61694604 -82587885 + MIR3 SINE MIR 4 199 -9 190 387 38 0 chr12 61695982 61696088 -82586401 + MIR SINE MIR 119 228 -34 1435 139 117 32 chr12 61696383 61696664 -82585825 - AluJo SINE Alu -7 305 1 203 350 10 19 chr12 61696963 61697066 -82585423 + MIR SINE MIR 107 208 -54 229 335 73 28 chr12 61697186 61697434 -82585055 - MLT1J LTR MaLR 0 511 253 1761 183 46 50 chr12 61698243 61698289 -82584200 - MLT2D LTR ERVL 0 414 369 366 61 0 0 chr12 61698289 61698338 -82584151 + (TG)n Simple_repeat Simple_repeat 1 49 0 1761 183 46 50 chr12 61698338 61698707 -82583782 - MLT2D LTR ERVL -45 369 1 580 243 228 32 chr12 61698998 61699401 -82583088 + MLT1H LTR MaLR 60 541 -8 398 273 91 47 chr12 61699405 61699663 -82582826 - L1ME3A LINE L1 -332 5830 5567 301 257 20 40 chr12 61699719 61699820 -82582669 + L1ME4a LINE L1 5322 5420 -2388 2089 120 0 49 chr12 61699846 61700172 -82582317 - AluSg SINE Alu 0 310 1 415 284 31 6 chr12 61700305 61700467 -82582022 + L1ME4a LINE L1 5485 5650 -471 2121 114 0 13 chr12 61701042 61701340 -82581149 - AluSq SINE Alu 0 313 20 351 236 48 120 chr12 61701648 61701898 -82580591 + L1ME4a LINE L1 5878 6109 -12 247 126 19 194 chr12 61703453 61703556 -82578933 - MER5C DNA MER1_type -1 323 239 * 298 273 34 11 chr12 61703543 61703631 -82578858 - MER5C DNA MER1_type -214 110 21 560 287 97 6 chr12 61703938 61704208 -82578281 - MER110 LTR ERV1 0 491 227 249 234 135 45 chr12 61704343 61704454 -82578035 - MER110A LTR ERV1 -345 123 3 1814 141 7 4 chr12 61704718 61704994 -82577495 - AluSx SINE Alu -2 310 34 3413 62 5 0 chr12 61705463 61705899 -82576590 + L1PA7 LINE L1 5706 6143 -11 243 0 0 0 chr12 61705907 61705934 -82576555 + (CATA)n Simple_repeat Simple_repeat 2 28 0 37 0 0 0 chr12 61706721 61706758 -82575731 + AT_rich Low_complexity Low_complexity 1 37 0 321 100 0 0 chr12 61707539 61707589 -82574900 + (GA)n Simple_repeat Simple_repeat 1 50 0 3414 169 48 39 chr12 61708286 61709054 -82573435 + LTR1 LTR ERV1 11 785 0 652 318 127 22 chr12 61709361 61709723 -82572766 + L2 LINE L2 2906 3305 -8 290 252 52 7 chr12 61709774 61709909 -82572580 - L1ME4a LINE L1 0 6121 5981 3956 161 46 54 chr12 61710004 61710985 -82571504 + L1MB1 LINE L1 5187 6163 -5 1091 235 65 26 chr12 61711003 61711344 -82571145 - MLT1C LTR MaLR -51 416 63 1572 198 44 65 chr12 61713546 61714005 -82568484 - MLT1C LTR MaLR 0 467 19 413 180 24 45 chr12 61715702 61715841 -82566648 + MER69 DNA AcHobo 2380 2526 0 274 295 45 36 chr12 61716931 61717043 -82565446 + L2 LINE L2 3201 3313 0 440 265 54 27 chr12 61717116 61717263 -82565226 + MER5B DNA MER1_type 27 177 -1 741 200 26 89 chr12 61717379 61717569 -82564920 - MER45A DNA AcHobo 0 178 1 199 309 48 12 chr12 61717865 61717949 -82564540 + MIR SINE MIR 107 193 -69 571 298 186 30 chr12 61718562 61719002 -82563487 - L3 LINE CR1 -110 1467 959 806 315 45 60 chr12 61719357 61719962 -82562527 - L2 LINE L2 -174 3139 2553 991 210 17 0 chr12 61720051 61720232 -82562257 + MER5A DNA MER1_type 6 189 0 2064 158 33 0 chr12 61721176 61721542 -82560947 + L1MB4 LINE L1 5803 6180 0 2911 202 47 3 chr12 61722964 61723582 -82558907 + MER82 DNA MER2_type 8 652 -1 276 248 113 32 chr12 61725384 61725503 -82556986 + MIR SINE MIR 36 172 -65 912 284 216 5 chr12 61725574 61725944 -82556545 + L2 LINE L2 2866 3313 0 1378 163 33 4 chr12 61726905 61727150 -82555339 + MSTB1 LTR MaLR 181 432 0 237 279 137 31 chr12 61727443 61727604 -82554885 + MLT1J1 LTR MaLR 217 394 -52 315 341 17 29 chr12 61727837 61728010 -82554479 - MLT2E LTR ERVL -418 210 40 2187 106 0 0 chr12 61728406 61728715 -82553774 + AluSx SINE Alu 1 309 0 180 345 81 40 chr12 61728856 61729004 -82553485 - MIR3 SINE MIR -9 199 46 1892 243 63 44 chr12 61729185 61729888 -82552601 + L1ME3 LINE L1 5445 6160 -2 301 348 59 0 chr12 61729928 61730063 -82552426 + MIR SINE MIR 36 178 -84 1648 182 167 26 chr12 61730198 61730653 -82551836 + MLT2B1 LTR ERVL 1 519 -1 187 298 18 0 chr12 61731315 61731372 -82551117 + L2 LINE L2 3256 3313 0 250 293 0 0 chr12 61731861 61731919 -82550570 + MIR3 SINE MIR 97 154 -54 197 385 26 0 chr12 61732431 61732509 -82549980 - MIR3 SINE MIR -120 88 9 355 359 120 10 chr12 61732799 61733008 -82549481 - MIR SINE MIR -3 259 28 1707 192 68 26 chr12 61733028 61733205 -82549284 - MSTD LTR MaLR 0 396 228 264 30 0 0 chr12 61733205 61733238 -82549251 + (TG)n Simple_repeat Simple_repeat 1 33 0 1707 192 68 26 chr12 61733238 61733440 -82549049 - MSTD LTR MaLR -168 228 1 2393 185 13 9 chr12 61734034 61734493 -82547996 - LOR1b LTR ERV1 0 461 1 279 281 168 12 chr12 61734683 61734850 -82547639 + L2 LINE L2 3118 3310 -3 330 287 28 35 chr12 61736104 61736247 -82546242 + L2 LINE L2 1870 2011 -1303 1879 198 49 47 chr12 61736298 61736788 -82545701 + MLT1D LTR MaLR 1 491 -14 341 221 107 107 chr12 61740353 61740502 -82541987 - MIR SINE MIR -93 169 21 283 261 14 0 chr12 61741141 61741210 -82541279 - MIR3 SINE MIR 0 208 139 623 188 18 0 chr12 61741228 61741340 -82541149 - MLT1A1 LTR MaLR -1 373 260 1722 125 80 21 chr12 61741340 61741653 -82540836 - THE1B LTR MaLR 0 364 1 865 191 39 38 chr12 61741653 61741903 -82540586 - MLT1A1 LTR MaLR -112 253 1 219 114 0 0 chr12 61742007 61742042 -82540447 + (TA)n Simple_repeat Simple_repeat 1 35 0 1168 220 121 73 chr12 61742047 61742543 -82539946 - MLT2B1 LTR ERVL 0 520 1 2390 197 66 31 chr12 61743096 61743643 -82538846 + MLT1F1 LTR MaLR 2 567 0 24 0 0 0 chr12 61743780 61743804 -82538685 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr12 61744357 61744380 -82538109 + (CA)n Simple_repeat Simple_repeat 2 24 0 2102 122 3 0 chr12 61745905 61746200 -82536289 - AluSx SINE Alu -16 296 1 268 291 67 96 chr12 61746408 61746751 -82535738 - L2 LINE L2 -648 2666 2334 295 389 58 7 chr12 61747561 61747700 -82534789 + L2 LINE L2 3116 3261 -11 271 294 98 37 chr12 61747766 61747929 -82534560 + MER117 DNA MER1_type 2 174 -23 232 324 99 36 chr12 61747974 61748085 -82534404 - L2 LINE L2 0 3272 3155 284 304 184 19 chr12 61748328 61748486 -82534003 - L2 LINE L2 0 3313 3130 330 67 0 0 chr12 61748932 61748977 -82533512 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr12 61749154 61749182 -82533307 + AT_rich Low_complexity Low_complexity 1 28 0 204 250 42 0 chr12 61749497 61749545 -82532944 + MIR SINE MIR 58 107 -101 379 298 80 21 chr12 61749685 61749873 -82532616 + MIR SINE MIR 2 200 -62 298 297 65 22 chr12 61750488 61750626 -82531863 - L2 LINE L2 -1 3312 3169 2201 152 62 27 chr12 61750719 61751228 -82531261 - MLT2A2 LTR ERVL 0 554 4 697 174 22 73 chr12 61751348 61751526 -82530963 - MER96 DNA MER1_type? -5 170 2 345 244 56 11 chr12 61752581 61752671 -82529818 + L2 LINE L2 3175 3268 -4 769 280 79 50 chr12 61752724 61753345 -82529144 + L2 LINE L2 2667 3311 -2 261 278 33 33 chr12 61753420 61753510 -82528979 - MIR SINE MIR -80 182 93 309 349 38 8 chr12 61754677 61754809 -82527680 + MIR SINE MIR 66 201 -61 1335 203 29 74 chr12 61754812 61755191 -82527298 - MLT1A1 LTR MaLR -3 362 1 183 323 165 0 chr12 61755232 61755359 -82527130 - MIR SINE MIR 0 262 115 193 366 188 5 chr12 61755894 61756107 -82526382 + MIR SINE MIR 11 262 0 189 330 94 58 chr12 61756997 61757188 -82525301 + L2 LINE L2 2472 2669 -645 265 75 0 25 chr12 61757245 61757285 -82525204 - tRNA-Gly-GGA tRNA tRNA -36 39 1 2433 256 65 57 chr12 61757613 61758017 -82524472 + L1M4 LINE L1 3545 3944 -2202 4797 21 0 4 chr12 61758017 61758576 -82523913 + L1PA2 LINE L1 5598 6154 -1 2433 256 65 57 chr12 61758576 61758883 -82523606 + L1M4 LINE L1 3944 4247 -1899 1909 142 7 0 chr12 61758883 61759157 -82523332 + AluSx SINE Alu 15 290 -22 2433 256 65 57 chr12 61759157 61759633 -82522856 + L1M4 LINE L1 4247 4750 -1396 2089 121 30 0 chr12 61759633 61759931 -82522558 + AluSq SINE Alu 1 307 -6 2433 256 65 57 chr12 61759931 61760226 -82522263 + L1M4 LINE L1 4750 5041 -1105 223 382 48 21 chr12 61760323 61760509 -82521980 - MIR SINE MIR 0 262 72 265 207 0 0 chr12 61761063 61761121 -82521368 - MLT1A2 LTR MaLR -17 357 300 652 173 0 106 chr12 61761206 61761385 -82521104 - MLT1A2 LTR MaLR -214 160 1 791 209 127 0 chr12 61763851 61764009 -82518480 + MER45A DNA AcHobo 1 178 0 607 281 78 16 chr12 61764011 61764267 -82518222 - L2 LINE L2 -2631 683 412 619 318 123 13 chr12 61764593 61764829 -82517660 - MIR SINE MIR 0 262 1 2053 120 11 7 chr12 61767172 61767492 -82514997 + AluSx SINE Alu 1 321 0 24 0 0 0 chr12 61767706 61767730 -82514759 + AT_rich Low_complexity Low_complexity 1 24 0 2424 83 3 0 chr12 61769367 61769669 -82512820 + AluSq SINE Alu 1 303 -10 472 253 127 13 chr12 61771114 61771272 -82511217 - MIR3 SINE MIR -14 194 19 292 307 30 0 chr12 61771498 61771599 -82510890 - MIR3 SINE MIR -9 199 96 442 254 218 10 chr12 61771914 61772107 -82510382 + MIR SINE MIR 20 252 -10 867 243 138 37 chr12 61772818 61773283 -82509206 + MLT1F1 LTR MaLR 56 567 0 1116 282 157 11 chr12 61773924 61774381 -82508108 + L2 LINE L2 2796 3313 0 13737 51 4 4 chr12 61775063 61776882 -82505607 + L1P LINE L1 11 1829 -4317 2087 78 3 3 chr12 61777165 61777479 -82505010 + AluY SINE Alu 1 314 0 25520 33 1 0 chr12 61778607 61782619 -82499870 + L1PA3 LINE L1 2138 6152 -3 457 345 25 10 chr12 61783135 61783332 -82499157 + MIR SINE MIR 3 202 -60 185 362 191 14 chr12 61784722 61784863 -82497626 - L2 LINE L2 -4 3268 3103 276 136 30 15 chr12 61784870 61784936 -82497553 + (TA)n Simple_repeat Simple_repeat 1 67 0 1838 156 143 11 chr12 61785225 61785603 -82496886 + MSTA LTR MaLR 1 428 0 9092 141 21 45 chr12 61785605 61785970 -82496519 + MSTA-int LTR MaLR 3 375 -1205 2308 119 0 0 chr12 61785970 61786272 -82496217 - AluSx SINE Alu -10 302 1 9092 141 21 45 chr12 61786272 61787522 -82494967 + MSTA-int LTR MaLR 375 1580 0 2085 148 88 18 chr12 61787522 61787922 -82494567 + MSTA LTR MaLR 1 428 0 360 345 153 18 chr12 61788124 61788509 -82493980 - L3 LINE CR1 -9 1568 1132 181 328 17 0 chr12 61789412 61789470 -82493019 - L3 LINE CR1 -453 1124 1066 180 375 0 0 chr12 61789889 61789945 -82492544 + L2 LINE L2 3210 3265 -7 * 397 291 58 26 chr12 61789936 61790125 -82492364 - MIR SINE MIR -54 208 14 303 328 69 32 chr12 61790247 61790422 -82492067 - MER5B DNA MER1_type 0 178 2 2197 79 0 0 chr12 61790967 61791347 -82491142 + AluY SINE Alu 1 380 0 1565 199 14 37 chr12 61792252 61792604 -82489885 - MER2 DNA MER2_type 0 344 1 234 62 0 0 chr12 61795416 61795448 -82487041 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 994 160 47 12 chr12 61796297 61796466 -82486023 + AluJo SINE Alu 1 175 -137 563 197 80 0 chr12 61796700 61796837 -82485652 - L1MC2 LINE L1 -11 6333 6186 760 154 8 0 chr12 61796881 61796998 -82485491 - FLAM_C SINE Alu -15 118 1 2310 148 62 85 chr12 61797530 61798092 -82484397 - MER34C LTR ERV1 0 585 37 2935 126 133 16 chr12 61798100 61798657 -82483832 + LTR29 LTR ERV1 1 622 0 366 282 32 48 chr12 61799097 61799131 -82483358 + MER5A DNA MER1_type 43 76 -113 3030 162 40 75 chr12 61799131 61799847 -82482642 + LTR8 LTR ERV1 1 691 0 366 282 32 48 chr12 61799847 61799936 -82482553 + MER5A DNA MER1_type 76 164 -25 23 54 0 0 chr12 61800067 61800104 -82482385 + AT_rich Low_complexity Low_complexity 1 37 0 272 187 178 37 chr12 61800601 61800708 -82481781 + MLT1J LTR MaLR 390 511 0 183 340 117 11 chr12 61802000 61802094 -82480395 + L2 LINE L2 3203 3306 -7 1578 221 202 53 chr12 61802253 61803141 -82479348 - LTR28 LTR ERV1 0 1020 1 31 0 0 0 chr12 61803225 61803256 -82479233 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 61803557 61803578 -82478911 + AT_rich Low_complexity Low_complexity 1 21 0 1812 164 38 124 chr12 61804117 61804473 -82478016 - MLT1D LTR MaLR 0 505 211 2105 140 0 0 chr12 61804473 61804765 -82477724 - AluSx SINE Alu -20 292 1 1812 164 38 124 chr12 61804765 61804958 -82477531 - MLT1D LTR MaLR -294 211 3 221 302 107 47 chr12 61805031 61805109 -82477380 - MIR SINE MIR -45 217 145 1562 177 48 24 chr12 61805109 61805403 -82477086 - AluJo SINE Alu -8 304 4 221 302 107 47 chr12 61805403 61805473 -82477016 - MIR SINE MIR -117 145 60 653 253 44 0 chr12 61806291 61806449 -82476040 + MIR SINE MIR 98 262 0 635 191 55 80 chr12 61806447 61806646 -82475843 + L2 LINE L2 3120 3313 0 * 675 217 140 75 chr12 61806963 61807400 -82475089 + MER4C LTR ERV1 1 465 0 857 190 0 0 chr12 61807406 61807564 -82474925 - MER3 DNA MER1_type -46 163 6 300 206 0 0 chr12 61807574 61807642 -82474847 - MLT1I LTR MaLR -18 391 324 187 162 0 29 chr12 61807973 61808041 -82474448 + (TA)n Simple_repeat Simple_repeat 1 66 0 1576 181 40 0 chr12 61808108 61808434 -82474055 + L1MB5 LINE L1 5782 6120 -54 5165 55 15 18 chr12 61809524 61810203 -82472286 - L1PA7 LINE L1 -6 6148 5472 25564 94 12 3 chr12 61810206 61814057 -82468432 - L1PA7 LINE L1 -841 5305 1418 7102 96 26 14 chr12 61814341 61815419 -82467070 + MER41B-int LTR ERV1 4856 5946 0 3273 113 35 15 chr12 61815419 61815957 -82466532 + MER41B LTR ERV1 1 549 -86 873 136 0 0 chr12 61816228 61816346 -82466143 + FLAM_C SINE Alu 1 118 -25 200 303 255 37 chr12 61816418 61816794 -82465695 + L2 LINE L2 2807 3264 -8 281 370 93 14 chr12 61819064 61819280 -82463209 + MIR SINE MIR 15 247 -15 497 250 0 0 chr12 61819313 61819413 -82463076 + L2 LINE L2 3173 3272 0 273 313 51 45 chr12 61819993 61820169 -82462320 - MLT1J LTR MaLR -230 281 105 1312 79 0 5 chr12 61820706 61820896 -82461593 + L1PA13 LINE L1 5955 6143 -20 287 112 71 0 chr12 61820898 61820996 -82461493 + (TA)n Simple_repeat Simple_repeat 1 105 0 596 312 99 44 chr12 61821565 61822001 -82460488 + L2 LINE L2 2810 3269 -3 395 229 0 0 chr12 61823623 61823693 -82458796 + MIR SINE MIR 69 138 -70 1430 249 75 7 chr12 61825907 61826482 -82456007 + L1MEc LINE L1 1689 2302 -4094 612 216 0 0 chr12 61827134 61827250 -82455239 + FLAM_C SINE Alu 1 116 -27 25 0 0 0 chr12 61827266 61827291 -82455198 + AT_rich Low_complexity Low_complexity 1 25 0 540 170 9 19 chr12 61827351 61827457 -82455032 - L1PB4 LINE L1 -10 6146 6042 3607 148 19 21 chr12 61827457 61827546 -82454943 - L1PB4 LINE L1 -52 6104 6016 2866 218 15 46 chr12 61827546 61828922 -82453567 - L1MA4A LINE L1 -289 6014 4691 9642 171 18 9 chr12 61828922 61831524 -82450965 + L1PA14 LINE L1 3532 6161 0 1225 212 104 12 chr12 61831535 61831880 -82450609 + MLT1D LTR MaLR 128 504 -1 21 36 0 0 chr12 61833081 61833109 -82449380 + AT_rich Low_complexity Low_complexity 1 28 0 1262 149 0 5 chr12 61833894 61834082 -82448407 - AluSx SINE Alu -125 187 1 581 332 70 11 chr12 61835120 61835406 -82447083 - L3 LINE CR1 -83 1494 1192 907 216 0 17 chr12 61835438 61835614 -82446875 + MER5A DNA MER1_type 17 189 0 505 319 14 24 chr12 61835724 61835937 -82446552 + L2 LINE L2 3102 3312 -1 428 306 119 46 chr12 61835969 61836188 -82446301 - L3 LINE CR1 -607 970 736 22 0 0 0 chr12 61836208 61836230 -82446259 + AT_rich Low_complexity Low_complexity 1 22 0 880 209 16 5 chr12 61836361 61836548 -82445941 - MER5A DNA MER1_type 0 189 1 616 96 0 0 chr12 61838390 61838473 -82444016 + L1P3 LINE L1 14 96 -6365 * 7707 82 6 3 chr12 61838471 61839594 -82442895 + L1P3 LINE L1 670 1772 -4679 414 180 0 0 chr12 61839669 61839769 -82442720 + T-rich Low_complexity Low_complexity 1 100 0 294 245 94 9 chr12 61840779 61840885 -82441604 - MIR SINE MIR -26 236 122 635 210 0 17 chr12 61840889 61841008 -82441481 + FLAM_C SINE Alu 1 117 -16 621 144 0 0 chr12 61841012 61841130 -82441359 + (GGGAA)n Simple_repeat Simple_repeat 2 119 0 331 315 98 0 chr12 61841145 61841237 -82441252 - MIR SINE MIR -155 107 7 207 49 73 0 chr12 61841772 61841813 -82440676 + (TA)n Simple_repeat Simple_repeat 1 44 0 210 363 54 24 chr12 61841920 61842088 -82440401 - L2 LINE L2 -235 3037 2865 705 204 170 5 chr12 61842377 61842583 -82439906 + MIR SINE MIR 20 259 -3 195 129 0 0 chr12 61842586 61842617 -82439872 + (TTA)n Simple_repeat Simple_repeat 1 31 0 247 214 47 146 chr12 61843105 61843297 -82439192 + L1MC5 LINE L1 7745 7917 -44 262 350 29 0 chr12 61843359 61843462 -82439027 + L2 LINE L2 3208 3313 0 237 65 0 0 chr12 61843539 61843570 -82438919 + (CA)n Simple_repeat Simple_repeat 2 32 0 491 105 0 0 chr12 61845015 61845091 -82437398 + L1PA8 LINE L1 6096 6171 -1 358 246 9 9 chr12 61845097 61845207 -82437282 + L1P LINE L1 5017 5126 -1020 541 124 0 0 chr12 61845207 61845296 -82437193 + L1PB1 LINE L1 5703 5791 -360 431 118 0 46 chr12 61845296 61845448 -82437041 + (TA)n Simple_repeat Simple_repeat 2 146 0 2183 134 11 8 chr12 61845452 61845817 -82436672 + L1PB1 LINE L1 5783 6148 -3 29 28 0 0 chr12 61845817 61845853 -82436636 + AT_rich Low_complexity Low_complexity 1 36 0 198 118 0 0 chr12 61845853 61845887 -82436602 + (A)n Simple_repeat Simple_repeat 1 34 0 226 250 52 37 chr12 61846576 61846712 -82435777 + L1M4 LINE L1 5118 5255 -891 282 324 33 37 chr12 61846814 61847055 -82435434 + L1M4 LINE L1 5409 5648 -526 228 298 12 36 chr12 61849261 61849345 -82433144 - MIR SINE MIR 0 262 181 701 303 106 29 chr12 61849365 61849744 -82432745 + L2 LINE L2 2520 2927 -387 454 315 37 51 chr12 61849875 61850091 -82432398 + MIR SINE MIR 15 227 -35 202 253 310 0 chr12 61850140 61850227 -82432262 - L2 LINE L2 -7 3306 3193 182 273 111 20 chr12 61850605 61850704 -82431785 - L2 LINE L2 -232 3040 2933 510 224 92 17 chr12 61850861 61850970 -82431519 + MLT1G LTR MaLR 404 532 -58 264 59 0 0 chr12 61850970 61851004 -82431485 + (CA)n Simple_repeat Simple_repeat 1 34 0 510 224 92 17 chr12 61851004 61851068 -82431421 + MLT1G LTR MaLR 532 590 0 314 179 0 12 chr12 61851603 61851687 -82430802 + MER53 DNA DNA 95 177 -12 306 237 0 11 chr12 61851613 61851706 -82430783 - MER53 DNA DNA -94 95 4 * 440 72 14 0 chr12 61851929 61851998 -82430491 + (CA)n Simple_repeat Simple_repeat 1 70 0 349 306 82 35 chr12 61852415 61852585 -82429904 - MIR3 SINE MIR -26 182 5 805 282 48 50 chr12 61852836 61853013 -82429476 + LTR16B LTR ERVL 34 210 -254 884 229 23 14 chr12 61853013 61853231 -82429258 - MER58A DNA MER1_type -1 223 4 805 282 48 50 chr12 61853231 61853471 -82429018 + LTR16B LTR ERVL 210 450 -14 1037 284 111 15 chr12 61854614 61855140 -82427349 - L2 LINE L2 -2 3311 2736 223 286 63 63 chr12 61855171 61855297 -82427192 + L2 LINE L2 3187 3312 -1 25 0 0 0 chr12 61855344 61855369 -82427120 + AT_rich Low_complexity Low_complexity 1 25 0 319 273 30 10 chr12 61855523 61855622 -82426867 + MER94 DNA DNA 33 133 -1 593 309 119 44 chr12 61856657 61857042 -82425447 + L2 LINE L2 2900 3313 0 1336 188 130 42 chr12 61857441 61857630 -82424859 + MSTD LTR MaLR 4 175 -221 2214 119 16 0 chr12 61857630 61857933 -82424556 - AluSx SINE Alu -2 310 3 1336 188 130 42 chr12 61857933 61858104 -82424385 + MSTD LTR MaLR 175 396 0 242 304 15 30 chr12 61858928 61859063 -82423426 - LTR67 LTR ERVL -14 543 411 788 283 42 53 chr12 61859442 61859707 -82422782 - L2 LINE L2 -1 3271 3010 785 250 30 47 chr12 61859768 61860000 -82422489 - L2 LINE L2 -175 3138 2911 * 808 305 111 56 chr12 61859996 61860635 -82421854 + L2 LINE L2 2298 2971 -343 1052 179 47 4 chr12 61861610 61861844 -82420645 + L1MB5 LINE L1 5813 6056 -118 533 105 11 0 chr12 61861847 61861942 -82420547 + (TA)n Simple_repeat Simple_repeat 2 97 0 2271 150 17 29 chr12 61861959 61862492 -82419997 - LTR8 LTR ERV1 0 691 194 440 163 0 92 chr12 61862488 61862586 -82419903 - LTR8 LTR ERV1 -602 89 1 * 2140 171 20 54 chr12 61862586 61863343 -82419146 - L1M4 LINE L1 -405 5769 5040 257 213 0 0 chr12 61865396 61865443 -82417046 - MER96 DNA MER1_type? -76 99 53 810 191 108 0 chr12 61865492 61865649 -82416840 + MER45A DNA AcHobo 1 174 -4 1130 232 31 46 chr12 61865699 61866112 -82416377 + L2 LINE L2 2566 2972 -342 300 254 25 8 chr12 61866232 61866354 -82416135 + L1M3 LINE L1 5494 5617 -563 644 323 25 25 chr12 61866917 61867152 -82415337 + MIR SINE MIR 7 241 -21 2622 164 14 14 chr12 61867848 61868189 -82414300 - MLT2B1 LTR ERVL -36 484 141 2214 139 88 30 chr12 61868189 61868621 -82413868 + MSTB2 LTR MaLR 1 457 0 2622 164 14 14 chr12 61868621 61868761 -82413728 - MLT2B1 LTR ERVL -378 142 3 868 227 78 26 chr12 61869103 61869411 -82413078 - MLT1B LTR MaLR -2 388 65 606 252 36 0 chr12 61869819 61869958 -82412531 + MIR3 SINE MIR 62 205 -3 844 228 35 51 chr12 61870535 61870790 -82411699 + MIR SINE MIR 2 252 -10 231 361 154 31 chr12 61871492 61872405 -82410084 - L2 LINE L2 -1733 1581 556 439 223 36 36 chr12 61872499 61872611 -82409878 - MIR SINE MIR -118 144 33 28 29 0 0 chr12 61872771 61872806 -82409683 + AT_rich Low_complexity Low_complexity 1 35 0 2465 70 0 0 chr12 61872899 61873198 -82409291 - AluY SINE Alu -12 299 1 207 189 0 0 chr12 61873530 61873567 -82408922 + (CA)n Simple_repeat Simple_repeat 1 37 0 1791 203 15 125 chr12 61873892 61874494 -82407995 + MLT1E LTR MaLR 1 536 -57 315 0 0 0 chr12 61876928 61876963 -82405526 + (TG)n Simple_repeat Simple_repeat 1 35 0 805 167 0 0 chr12 61881223 61881343 -82401146 + FLAM_C SINE Alu 1 120 -23 207 0 0 0 chr12 61882229 61882252 -82400237 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 254 204 65 75 chr12 61882353 61882446 -82400043 - MLT1I LTR MaLR -15 394 303 368 265 81 7 chr12 61882489 61882625 -82399864 - MLT1I LTR MaLR -231 178 33 32 0 0 0 chr12 61883641 61883673 -82398816 + AT_rich Low_complexity Low_complexity 1 32 0 2037 114 0 34 chr12 61883718 61884015 -82398474 - AluSg SINE Alu -23 287 1 402 220 13 69 chr12 61884136 61884295 -82398194 - MLT1K LTR MaLR -17 571 422 22 0 0 0 chr12 61884337 61884359 -82398130 + AT_rich Low_complexity Low_complexity 1 22 0 255 318 28 9 chr12 61884566 61884673 -82397816 - MLT1K LTR MaLR -290 298 190 2262 119 137 8 chr12 61884775 61885154 -82397335 - MSTA LTR MaLR 0 428 1 372 262 62 55 chr12 61885260 61885405 -82397084 - L2 LINE L2 -1 3271 3126 2092 128 7 0 chr12 61885503 61885799 -82396690 + AluSq SINE Alu 2 299 -14 26 64 0 0 chr12 61886826 61886873 -82395616 + AT_rich Low_complexity Low_complexity 1 47 0 195 162 0 0 chr12 61888130 61888167 -82394322 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 23 33 0 0 chr12 61889061 61889091 -82393398 + AT_rich Low_complexity Low_complexity 1 30 0 2183 172 109 11 chr12 61890236 61890695 -82391794 + MER67D LTR ERV1 11 514 0 299 214 24 36 chr12 61890879 61890963 -82391526 + MLT1J LTR MaLR 353 435 -76 216 379 0 0 chr12 61891207 61891273 -82391216 + L2 LINE L2 3205 3270 -2 365 269 39 0 chr12 61891927 61892031 -82390458 + MIR3 SINE MIR 100 207 -1 559 204 72 99 chr12 61893219 61893330 -82389159 - MER33 DNA MER1_type -2261 324 212 420 20 0 0 chr12 61893330 61893379 -82389110 + (TA)n Simple_repeat Simple_repeat 1 49 0 2056 115 11 0 chr12 61893383 61893661 -82388828 - AluSx SINE Alu -31 281 1 559 204 72 99 chr12 61893661 61893877 -82388612 - MER33 DNA MER1_type -2376 209 1 894 54 0 0 chr12 61895652 61895764 -82386725 - AluSg/x SINE Alu 0 312 201 1113 160 0 0 chr12 61896037 61896206 -82386283 + AluSc SINE Alu 138 306 -3 216 296 0 37 chr12 61898338 61898392 -82384097 + MIR SINE MIR 21 72 -136 441 188 0 79 chr12 61898406 61898507 -82383982 - L2 LINE L2 0 3313 3221 481 358 0 45 chr12 61898531 61898707 -82383782 - MIR3 SINE MIR -31 177 10 691 68 184 0 chr12 61898798 61898901 -82383588 + L1MA5A LINE L1 6070 6191 -106 314 328 88 8 chr12 61899315 61899440 -82383049 + MIR SINE MIR 20 154 -108 443 253 58 52 chr12 61899710 61899884 -82382605 - MER5B DNA MER1_type -3 175 1 2146 126 3 3 chr12 61899888 61900197 -82382292 + AluSc SINE Alu 1 309 0 195 186 0 0 chr12 61900511 61900554 -82381935 + (TG)n Simple_repeat Simple_repeat 2 44 0 533 291 82 11 chr12 61901684 61901866 -82380623 - MIR SINE MIR -22 240 46 198 317 10 58 chr12 61902419 61902523 -82379966 + MER5A DNA MER1_type 17 115 -74 295 273 135 12 chr12 61902556 61902727 -82379762 + MIR SINE MIR 8 192 -70 251 359 11 0 chr12 61904240 61904332 -82378157 + L3 LINE CR1 1044 1136 -441 342 326 117 29 chr12 61904893 61905132 -82377357 + L3 LINE CR1 1142 1401 -176 210 328 49 41 chr12 61905125 61905247 -82377242 + L2 LINE L2 2631 2753 -561 * 312 290 43 43 chr12 61905351 61905444 -82377045 + L3 LINE CR1 1481 1573 -4 228 381 33 14 chr12 61905443 61905658 -82376831 + L2 LINE L2 2168 2386 -928 * 228 301 71 9 chr12 61905668 61905781 -82376708 + L2 LINE L2 2942 3061 -252 195 241 69 0 chr12 61905910 61905968 -82376521 + L2 LINE L2 3248 3309 -4 1384 211 43 7 chr12 61906305 61906604 -82375885 + AluJo SINE Alu 1 310 -2 257 319 146 33 chr12 61906978 61907101 -82375388 - MIR SINE MIR -1 261 153 2110 119 54 40 chr12 61907101 61907471 -82375018 - THE1C LTR MaLR 0 375 1 257 319 146 33 chr12 61907471 61907560 -82374929 - MIR SINE MIR -109 153 25 336 292 31 23 chr12 61907815 61907945 -82374544 - MIR SINE MIR -42 220 90 347 285 132 33 chr12 61908898 61909140 -82373349 + L3b LINE CR1 1186 1451 -132 386 197 26 0 chr12 61909315 61909391 -82373098 - MER45A DNA AcHobo -1 177 100 521 204 10 10 chr12 61909449 61909547 -82372942 - MER45A DNA AcHobo -80 98 1 203 233 17 50 chr12 61909549 61909609 -82372880 + MIR3 SINE MIR 118 175 -33 216 0 0 0 chr12 61910388 61910412 -82372077 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 373 43 21 0 chr12 61911478 61911525 -82370964 - MADE1 DNA Mariner -31 49 2 4008 137 47 39 chr12 61911526 61912078 -82370411 + L1MA5 LINE L1 5569 6130 -170 843 164 0 0 chr12 61912078 61912200 -82370289 - FLAM_C SINE Alu -10 123 2 4008 137 47 39 chr12 61912200 61912368 -82370121 + L1MA5 LINE L1 6130 6295 -5 13120 127 22 8 chr12 61912409 61914420 -82368069 - Tigger2 DNA MER2_type -679 2039 1 278 346 149 34 chr12 61914429 61914637 -82367852 - MIR SINE MIR -2 260 29 250 221 198 23 chr12 61917218 61917304 -82365185 - MIR SINE MIR -119 143 43 732 126 9 0 chr12 61917619 61917730 -82364759 + L1PA16 LINE L1 6055 6166 0 5439 167 45 28 chr12 61918240 61919424 -82363065 + L1MC2 LINE L1 5150 6344 0 21 0 0 0 chr12 61921973 61921994 -82360495 + AT_rich Low_complexity Low_complexity 1 21 0 2543 120 83 10 chr12 61922046 61922445 -82360044 + MSTA LTR MaLR 1 428 0 1464 189 21 4 chr12 61922487 61922767 -82359722 + AluJo SINE Alu 12 296 -16 937 272 83 73 chr12 61922976 61923070 -82359419 - L2 LINE L2 -203 3110 3018 4070 109 22 0 chr12 61923070 61923611 -82358878 + MER41A LTR ERV1 1 553 -1 937 272 83 73 chr12 61923611 61924294 -82358195 - L2 LINE L2 -295 3018 2322 2767 113 11 5 chr12 61924590 61924963 -82357526 - THE1C LTR MaLR 0 375 1 677 283 210 22 chr12 61925167 61925524 -82356965 - L2 LINE L2 -995 2319 1896 8356 53 2 0 chr12 61925525 61926489 -82356000 + LTR5 LTR ERVK 1 966 -3 49453 87 9 9 chr12 61926492 61933914 -82348575 + HERVK LTR ERVK 1 7301 -116 439 84 11 168 chr12 61933915 61934010 -82348479 + SVA Other Other 857 936 -450 8023 65 2 0 chr12 61934010 61934974 -82347515 + LTR5 LTR ERVK 1 966 -3 491 318 69 21 chr12 61934975 61935168 -82347321 - L2 LINE L2 -1412 1902 1695 456 35 0 0 chr12 61935168 61935226 -82347263 + (CTTG)n Simple_repeat Simple_repeat 1 58 0 491 318 69 21 chr12 61935226 61935265 -82347224 - L2 LINE L2 -1619 1695 1659 371 276 98 17 chr12 61936076 61936250 -82346239 - MIR3 SINE MIR -1 207 20 198 0 0 0 chr12 61936810 61936832 -82345657 + (TTTC)n Simple_repeat Simple_repeat 4 25 0 403 324 7 0 chr12 61937089 61937225 -82345264 - MIR3 SINE MIR -21 187 51 3149 104 12 7 chr12 61937695 61938127 -82344362 - MER57B LTR ERV1 0 434 1 2112 238 133 42 chr12 61938919 61939892 -82342597 - L2 LINE L2 0 3313 2238 215 295 39 64 chr12 61940731 61940884 -82341605 + MIR SINE MIR 24 126 -82 609 103 0 0 chr12 61940993 61941071 -82341418 + MADE1 DNA Mariner 3 80 0 1057 194 0 74 chr12 61941219 61941356 -82341133 - MER58A DNA MER1_type -2217 203 86 2107 108 0 10 chr12 61941356 61941644 -82340845 - AluSx SINE Alu -15 297 13 1057 194 0 74 chr12 61941644 61941722 -82340767 - MER58A DNA MER1_type -2334 86 4 229 81 0 0 chr12 61941972 61942009 -82340480 - LTR66 LTR ERVL -170 440 404 201 182 0 0 chr12 61942009 61942042 -82340447 + (TA)n Simple_repeat Simple_repeat 1 33 0 291 204 20 0 chr12 61942042 61942145 -82340344 - L1MCa LINE L1 -1339 6983 2007 233 222 0 0 chr12 61942145 61942199 -82340290 + LTR66 LTR ERVL 394 447 -163 253 156 0 0 chr12 61942216 61942261 -82340228 + L1MC4 LINE L1 6659 6703 -1339 2449 125 28 17 chr12 61942533 61942893 -82339596 + THE1B LTR MaLR 1 364 0 12156 84 5 1 chr12 61942893 61944460 -82338029 + THE1B-int LTR MaLR 1 1574 -6 2030 119 30 16 chr12 61944466 61944769 -82337720 + THE1B LTR MaLR 1 307 -57 1500 239 126 47 chr12 61944974 61945459 -82337030 + MLT1F LTR MaLR 1 523 -19 913 209 58 22 chr12 61947263 61947488 -82335001 + MIR SINE MIR 2 234 -28 2670 145 136 46 chr12 61948985 61949545 -82332944 + MER4B LTR ERV1 1 610 0 2418 142 57 47 chr12 61949755 61950021 -82332468 + MER31A LTR ERV1 10 285 -200 2372 100 0 3 chr12 61950021 61950330 -82332159 + AluSc SINE Alu 1 308 -1 2418 142 57 47 chr12 61950330 61950534 -82331955 + MER31A LTR ERV1 285 485 0 24 32 0 0 chr12 61950734 61950765 -82331724 + AT_rich Low_complexity Low_complexity 1 31 0 290 176 29 29 chr12 61952469 61952537 -82329952 + MIR SINE MIR 83 150 -58 2453 163 48 0 chr12 61952577 61953266 -82329223 - L1MA9 LINE L1 -578 5734 5015 954 224 30 75 chr12 61953271 61953380 -82329109 + L1MA9 LINE L1 5722 5834 -478 915 83 0 0 chr12 61953380 61953512 -82328977 + L1PB3 LINE L1 6023 6154 0 954 224 30 75 chr12 61953512 61953805 -82328684 + L1MA9 LINE L1 5834 6069 -243 14902 134 24 5 chr12 61953809 61956156 -82326333 - Tigger1 DNA MER2_type 0 2418 26 992 175 67 0 chr12 61956164 61956358 -82326131 + L1MA9 LINE L1 6070 6276 -36 503 180 78 16 chr12 61956377 61956481 -82326008 + L1M1 LINE L1 25 140 -7425 2204 107 0 0 chr12 61956481 61956770 -82325719 + AluSx SINE Alu 3 291 -21 503 180 78 16 chr12 61956770 61956793 -82325696 + L1M1 LINE L1 140 160 -7405 317 222 49 0 chr12 61956889 61956970 -82325519 + MIR SINE MIR 123 207 -55 2242 107 3 3 chr12 61957941 61958251 -82324238 - AluY SINE Alu -1 310 1 254 118 147 59 chr12 61958340 61958408 -82324081 - MLT1J LTR MaLR -41 470 397 787 204 0 25 chr12 61958442 61958599 -82323890 + FRAM SINE Alu 2 154 -22 681 283 18 57 chr12 61958664 61958943 -82323546 - MLT1J LTR MaLR -243 268 1 199 333 81 0 chr12 61959510 61959597 -82322892 + MIR SINE MIR 23 116 -92 181 267 0 0 chr12 61960100 61960145 -82322344 - L2 LINE L2 -2 3311 3267 3113 131 48 82 chr12 61960167 61960716 -82321773 + LTR36 LTR ERV1 2 528 -83 1283 189 98 39 chr12 61960716 61960879 -82321610 - AluJb SINE Alu 0 302 113 342 0 0 0 chr12 61960879 61960917 -82321572 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1283 189 98 39 chr12 61960917 61961038 -82321451 - AluJb SINE Alu -189 113 1 3113 131 48 82 chr12 61961038 61961120 -82321369 + LTR36 LTR ERV1 528 611 0 515 267 127 12 chr12 61962544 61962709 -82319780 + MIR SINE MIR 73 256 -6 1504 167 17 131 chr12 61966285 61966698 -82315791 - MER39 LTR ERV1 -1 706 341 360 231 104 21 chr12 61966700 61966817 -82315672 - MER39 LTR ERV1 -427 125 1 267 308 94 26 chr12 61967525 61967642 -82314847 - MIR SINE MIR -63 145 21 23 68 0 0 chr12 61967686 61967730 -82314759 + AT_rich Low_complexity Low_complexity 1 44 0 582 273 26 38 chr12 61968078 61968342 -82314147 + L1ME LINE L1 5558 5818 -303 515 274 53 38 chr12 61968343 61968606 -82313883 + L1MEd LINE L1 963 1229 -4890 246 287 57 12 chr12 61968655 61968742 -82313747 + MIR3 SINE MIR 79 170 -38 24 53 0 0 chr12 61969135 61969173 -82313316 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr12 61969200 61969227 -82313262 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 61969340 61969361 -82313128 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 61969626 61969661 -82312828 + AT_rich Low_complexity Low_complexity 1 35 0 245 272 29 88 chr12 61970766 61970902 -82311587 + MLT1K LTR MaLR 9 136 -452 597 272 39 34 chr12 61971047 61971253 -82311236 + MLT1K LTR MaLR 382 588 0 333 314 41 25 chr12 61971364 61971485 -82311004 + L2 LINE L2 3183 3305 -8 198 0 0 0 chr12 61972207 61972229 -82310260 + (GTTTG)n Simple_repeat Simple_repeat 3 24 0 828 185 22 11 chr12 61972248 61972432 -82310057 - MER5A DNA MER1_type -3 186 1 322 369 135 18 chr12 61972860 61973460 -82309029 + L2 LINE L2 863 1391 -1923 1376 228 156 31 chr12 61973460 61973625 -82308864 + MLT1F LTR MaLR 1 144 -398 2235 60 10 20 chr12 61973625 61973926 -82308563 + AluY SINE Alu 1 298 -13 1376 228 156 31 chr12 61973926 61974242 -82308247 + MLT1F LTR MaLR 144 542 0 322 369 135 18 chr12 61974242 61974595 -82307894 + L2 LINE L2 1391 1928 -1386 658 276 73 62 chr12 61974795 61975135 -82307354 - L2 LINE L2 -670 2644 2301 776 319 42 90 chr12 61977376 61977833 -82304656 + L2 LINE L2 2837 3271 -1 993 320 138 45 chr12 61977852 61978124 -82304365 - L2 LINE L2 -40 3273 3028 2474 68 3 0 chr12 61978124 61978433 -82304056 + AluY SINE Alu 1 310 -1 993 320 138 45 chr12 61978433 61979203 -82303286 - L2 LINE L2 -285 3028 2148 403 253 77 69 chr12 61979232 61979493 -82302996 + L1MEd LINE L1 999 1261 -4944 7507 34 1 0 chr12 61979616 61980565 -82301924 + L1PA5 LINE L1 5199 6148 -6 250 65 5 33 chr12 61980661 61980717 -82301772 + L1M LINE L1 5349 5406 -756 1625 171 163 19 chr12 61980719 61981087 -82301402 + MSTA LTR MaLR 1 421 -7 5087 132 33 17 chr12 61981088 61981961 -82300528 + L1MA8 LINE L1 5402 6288 -3 446 319 94 34 chr12 61981962 61982260 -82300229 + L1MEd LINE L1 1559 1874 -4522 2373 94 0 0 chr12 61982592 61982889 -82299600 + AluY SINE Alu 2 298 -13 333 316 37 12 chr12 61982987 61983160 -82299329 + L1ME3A LINE L1 5708 5886 -284 651 215 245 20 chr12 61983388 61983588 -82298901 + MIR SINE MIR 18 262 0 570 337 112 11 chr12 61983616 61984055 -82298434 - L2 LINE L2 -1487 1827 1345 506 180 60 0 chr12 61984137 61984237 -82298252 - MLT1A1 LTR MaLR 0 365 260 9377 102 51 31 chr12 61984237 61985665 -82296824 - THE1B-int LTR MaLR -123 1457 2 2092 143 19 19 chr12 61985666 61986030 -82296459 - THE1B LTR MaLR 0 364 1 738 133 31 31 chr12 61986031 61986159 -82296330 - MLT1A1 LTR MaLR -228 137 10 434 360 144 29 chr12 61986166 61986854 -82295635 - L2 LINE L2 -2083 1231 465 28 29 0 0 chr12 61987404 61987439 -82295050 + AT_rich Low_complexity Low_complexity 1 35 0 592 250 43 33 chr12 61988679 61988863 -82293626 - MIR SINE MIR -1 261 76 29 0 0 0 chr12 61989000 61989029 -82293460 + AT_rich Low_complexity Low_complexity 1 29 0 195 227 0 23 chr12 61989031 61989075 -82293414 + L3b LINE CR1 1524 1566 -17 912 316 106 32 chr12 61989423 61989815 -82292674 - L3 LINE CR1 -19 1558 1110 1329 161 38 110 chr12 61989815 61990206 -82292283 + MLT1A1 LTR MaLR 1 363 -2 912 316 106 32 chr12 61990206 61990380 -82292109 - L3 LINE CR1 -467 1110 950 639 253 52 57 chr12 61990577 61990815 -82291674 - MIR SINE MIR -2 260 18 2197 139 34 3 chr12 61991802 61992155 -82290334 + THE1B LTR MaLR 1 364 0 227 208 0 21 chr12 61992559 61992607 -82289882 + LTR67 LTR ERVL 511 557 0 29 0 0 0 chr12 61994967 61994996 -82287493 + AT_rich Low_complexity Low_complexity 1 29 0 1114 158 134 35 chr12 61995091 61995345 -82287144 - MER1B DNA MER1_type 0 339 61 323 344 64 24 chr12 61995385 61995510 -82286979 + MIR SINE MIR 1 130 -132 363 270 74 27 chr12 61995538 61995686 -82286803 + MIR SINE MIR 94 248 -14 325 302 192 6 chr12 61995700 61995872 -82286617 + MIR3 SINE MIR 1 204 -4 706 300 88 31 chr12 61995898 61995988 -82286501 + L2 LINE L2 2937 3020 -293 2175 136 30 41 chr12 61995988 61996356 -82286133 + THE1B LTR MaLR 1 364 0 706 300 88 31 chr12 61996356 61996618 -82285871 + L2 LINE L2 3020 3309 -4 673 219 7 0 chr12 61996624 61996770 -82285719 + L1ME LINE L1 5633 5779 -383 333 265 127 39 chr12 61996908 61997089 -82285400 - MIR3 SINE MIR -9 199 3 385 292 146 5 chr12 61997114 61997306 -82285183 + MIR SINE MIR 34 252 -10 22 0 0 0 chr12 61997735 61997757 -82284732 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 61998546 61998568 -82283921 + AT_rich Low_complexity Low_complexity 1 22 0 370 292 36 36 chr12 61999056 61999193 -82283296 + MIR SINE MIR 40 176 -86 723 244 79 86 chr12 61999207 61999532 -82282957 - MLT1H LTR MaLR -16 533 169 2768 141 24 7 chr12 61999532 61999985 -82282504 - MER65C LTR ERV1 0 461 1 723 244 79 86 chr12 61999985 62000095 -82282394 - MLT1H LTR MaLR -380 169 60 473 220 19 28 chr12 62001422 62001859 -82280630 + (TA)n Simple_repeat Simple_repeat 1 433 0 192 217 0 0 chr12 62001950 62001996 -82280493 + (TA)n Simple_repeat Simple_repeat 1 46 0 553 275 145 15 chr12 62002112 62002312 -82280177 + MIR SINE MIR 7 232 -30 444 193 93 28 chr12 62002389 62002543 -82279946 + MLT1H LTR MaLR 23 175 -374 1468 202 21 78 chr12 62002603 62002985 -82279504 + MLT1A2 LTR MaLR 4 363 -11 295 178 58 129 chr12 62003084 62003242 -82279247 + MLT1H LTR MaLR 407 549 0 2074 137 7 0 chr12 62003274 62003567 -82278922 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr12 62003654 62003676 -82278813 + AT_rich Low_complexity Low_complexity 1 22 0 3767 103 13 0 chr12 62004302 62004843 -82277646 - L1P LINE L1 -1025 5121 4574 2784 52 20 0 chr12 62004822 62005197 -82277292 + L1PA8 LINE L1 5796 6177 0 * 2128 134 0 13 chr12 62006016 62006330 -82276159 + AluSx SINE Alu 1 310 -2 229 339 123 43 chr12 62006967 62007407 -82275082 - L2 LINE L2 -683 2631 2157 479 126 0 11 chr12 62009847 62009934 -82272555 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 296 215 182 25 chr12 62010561 62010597 -82271892 - MLT2C1 LTR ERVL -6 657 628 384 77 0 0 chr12 62010597 62010649 -82271840 + (TG)n Simple_repeat Simple_repeat 2 53 0 296 215 182 25 chr12 62010649 62010746 -82271743 - MLT2C1 LTR ERVL -35 628 313 733 135 83 30 chr12 62010963 62011096 -82271393 - MLT1E3 LTR MaLR -420 204 65 598 195 40 54 chr12 62010994 62011143 -82271346 - MLT2C1 LTR ERVL -250 147 1 * 28 0 0 0 chr12 62011550 62011578 -82270911 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 62012985 62013006 -82269483 + AT_rich Low_complexity Low_complexity 1 21 0 363 216 0 108 chr12 62013362 62013460 -82269029 - L2 LINE L2 0 3272 3186 2261 133 148 13 chr12 62013460 62013837 -82268652 + MSTA LTR MaLR 1 428 0 363 216 0 108 chr12 62013837 62013849 -82268640 - L2 LINE L2 -86 3186 3174 2351 76 3 17 chr12 62013988 62014289 -82268200 + AluY SINE Alu 3 299 -12 545 266 48 0 chr12 62014750 62014874 -82267615 - L2 LINE L2 -5 3267 3138 696 258 57 37 chr12 62015250 62015494 -82266995 + MIR SINE MIR 3 251 -11 1085 184 167 14 chr12 62015571 62016002 -82266487 - MER39 LTR ERV1 -150 557 1 689 110 0 0 chr12 62017127 62017218 -82265271 - LTR47A LTR ERVL 0 452 362 1971 144 78 11 chr12 62018069 62018417 -82264072 - LTR47A LTR ERVL -81 371 1 362 324 88 0 chr12 62019617 62019765 -82262724 - MIR3 SINE MIR -14 194 34 519 304 48 29 chr12 62020489 62020696 -82261793 + MIR SINE MIR 50 260 -2 1778 167 0 10 chr12 62021171 62021471 -82261018 - AluJb SINE Alu -15 297 1 29 60 0 0 chr12 62022071 62022121 -82260368 + AT_rich Low_complexity Low_complexity 1 50 0 32 43 0 0 chr12 62022143 62022189 -82260300 + AT_rich Low_complexity Low_complexity 1 46 0 183 275 14 72 chr12 62024329 62024398 -82258091 + L2 LINE L2 3206 3270 -2 24 0 0 0 chr12 62027180 62027204 -82255285 + AT_rich Low_complexity Low_complexity 1 24 0 937 271 83 73 chr12 62028028 62028122 -82254367 - L2 LINE L2 -203 3110 3018 4042 111 22 0 chr12 62028122 62028663 -82253826 + MER41A LTR ERV1 1 553 -1 937 271 83 73 chr12 62028663 62029346 -82253143 - L2 LINE L2 -295 3018 2322 2767 113 11 5 chr12 62029642 62030015 -82252474 - THE1C LTR MaLR 0 375 1 1059 296 154 35 chr12 62030219 62030575 -82251914 - L2 LINE L2 -995 2319 2007 8441 50 1 0 chr12 62030575 62031540 -82250949 + LTR5 LTR ERVK 1 966 -3 1059 296 154 35 chr12 62031540 62031734 -82250755 - L2 LINE L2 -1307 2007 1837 420 37 0 0 chr12 62031734 62031788 -82250701 + (CTTG)n Simple_repeat Simple_repeat 1 54 0 1059 296 154 35 chr12 62031788 62031827 -82250662 - L2 LINE L2 -1477 1837 1659 371 276 98 17 chr12 62032638 62032812 -82249677 - MIR3 SINE MIR -1 207 20 198 0 0 0 chr12 62033373 62033395 -82249094 + (TTTC)n Simple_repeat Simple_repeat 4 25 0 403 324 7 0 chr12 62033652 62033788 -82248701 - MIR3 SINE MIR -21 187 51 3181 111 7 5 chr12 62034258 62034691 -82247798 - MER57B LTR ERV1 0 434 1 2112 238 133 42 chr12 62035483 62036456 -82246033 - L2 LINE L2 0 3313 2238 215 295 39 64 chr12 62037295 62037448 -82245041 + MIR SINE MIR 24 126 -82 584 101 0 13 chr12 62037557 62037636 -82244853 + MADE1 DNA Mariner 3 80 0 16680 65 3 0 chr12 62037839 62039987 -82242502 + L1P LINE L1 1060 3214 -2932 270 346 58 0 chr12 62040789 62040893 -82241596 - L2 LINE L2 -26 3246 3137 393 244 0 0 chr12 62041233 62041356 -82241133 + C-rich Low_complexity Low_complexity 1 123 0 278 295 27 27 chr12 62041358 62041507 -82240982 + CT-rich Low_complexity Low_complexity 2 150 0 345 298 0 0 chr12 62041536 62041697 -82240792 + C-rich Low_complexity Low_complexity 1 161 0 745 198 24 0 chr12 62042844 62042970 -82239519 - FLAM_C SINE Alu -12 131 3 237 311 50 8 chr12 62044299 62044418 -82238071 - L3 LINE CR1 -291 1286 1163 1243 199 5 5 chr12 62044870 62045091 -82237398 - AluJb SINE Alu -91 221 1 226 337 0 41 chr12 62045556 62045654 -82236835 - MIR3 SINE MIR -6 202 109 514 288 105 7 chr12 62045772 62045925 -82236564 + MIR3 SINE MIR 20 187 -21 594 271 69 25 chr12 62045951 62046154 -82236335 - MIR SINE MIR -8 254 43 216 0 0 0 chr12 62046168 62046192 -82236297 + (TG)n Simple_repeat Simple_repeat 1 24 0 452 265 87 67 chr12 62046888 62047186 -82235303 - L1ME2 LINE L1 -9 6155 5852 246 232 36 0 chr12 62047274 62047330 -82235159 - L2 LINE L2 -218 3054 2997 825 274 110 29 chr12 62048555 62048938 -82233551 - MLT1J LTR MaLR -33 478 65 195 279 38 25 chr12 62048961 62049040 -82233449 - MIR SINE MIR -59 203 124 213 315 19 0 chr12 62049134 62049188 -82233301 + L2 LINE L2 3206 3260 -12 542 245 72 94 chr12 62050287 62050552 -82231937 + MIR SINE MIR 4 262 0 437 253 247 11 chr12 62050742 62050932 -82231557 + MIR SINE MIR 28 262 0 1793 148 3 48 chr12 62052207 62052517 -82229972 + AluJo SINE Alu 1 296 -16 513 282 128 15 chr12 62052671 62052866 -82229623 - MIR SINE MIR 0 262 46 222 191 143 48 chr12 62053023 62053086 -82229403 - L2 LINE L2 0 3272 3204 326 321 21 79 chr12 62053159 62053349 -82229140 + MER20B DNA MER1_type 1 179 -604 332 344 70 26 chr12 62053872 62054102 -82228387 + LTR67 LTR ERVL 2 241 -316 964 245 114 28 chr12 62054222 62054651 -82227838 + MLT1J LTR MaLR 1 466 -45 516 287 47 39 chr12 62055615 62055873 -82226616 + MLT1L LTR MaLR 356 615 0 1938 167 0 0 chr12 62056824 62057124 -82225365 - AluSx SINE Alu -12 300 1 31 68 0 0 chr12 62057955 62058014 -82224475 + AT_rich Low_complexity Low_complexity 1 59 0 9431 172 40 14 chr12 62058436 62061452 -82221037 - L1MA7 LINE L1 0 6291 3192 561 216 54 36 chr12 62061463 62061685 -82220804 + L1MB8 LINE L1 5900 6125 -53 4450 159 10 3 chr12 62061685 62063493 -82218996 - L1PA14 LINE L1 -2 6159 4241 2499 273 28 26 chr12 62063496 62064207 -82218282 - L1M3b LINE L1 -5438 843 246 342 0 0 0 chr12 62064207 62064245 -82218244 + (TG)n Simple_repeat Simple_repeat 1 38 0 2499 273 28 26 chr12 62064245 62064492 -82217997 - L1M3b LINE L1 -6035 246 1 207 364 57 0 chr12 62064537 62064625 -82217864 + L2 LINE L2 3203 3295 -18 916 195 19 0 chr12 62065837 62065996 -82216493 - AluJo SINE Alu -15 297 136 930 245 36 20 chr12 62067340 62067593 -82214896 - MIR SINE MIR -3 259 3 259 355 19 9 chr12 62067801 62067908 -82214581 - L2 LINE L2 -464 2850 2743 243 0 0 0 chr12 62067910 62067937 -82214552 + (TC)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr12 62067936 62067957 -82214532 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 270 291 70 119 chr12 62068100 62068502 -82213987 + L2 LINE L2 2890 3271 -1 796 152 0 30 chr12 62069279 62069411 -82213078 - AluJo SINE Alu -174 128 1 233 319 97 9 chr12 62069513 62069626 -82212863 - L2 LINE L2 -2 3311 3189 2301 175 49 16 chr12 62069737 62070183 -82212306 - MLT2B1 LTR ERVL -56 464 4 394 311 12 37 chr12 62070339 62070500 -82211989 + MIR SINE MIR 36 192 -70 22 35 0 0 chr12 62070701 62070730 -82211759 + AT_rich Low_complexity Low_complexity 1 29 0 268 345 109 59 chr12 62072250 62072589 -82209900 + L2 LINE L2 2134 2489 -825 1194 153 0 26 chr12 62072712 62072941 -82209548 - MER96B DNA MER1_type? -194 223 1 317 389 13 39 chr12 62073199 62073433 -82209056 + L2 LINE L2 2806 3033 -239 2014 130 38 24 chr12 62074399 62074769 -82207720 + THE1C LTR MaLR 1 375 0 402 256 41 29 chr12 62075054 62075226 -82207263 - L1M4 LINE L1 -2098 4048 3875 290 278 48 8 chr12 62075300 62075426 -82207063 - HAL1 LINE L1 -950 1540 1410 21 71 0 0 chr12 62075530 62075572 -82206917 + AT_rich Low_complexity Low_complexity 1 42 0 435 305 83 15 chr12 62075645 62075899 -82206590 - L1MEd LINE L1 -1234 1256 898 961 126 46 134 chr12 62077931 62078170 -82204319 - MER20 DNA MER1_type 0 219 2 25 31 0 0 chr12 62078221 62078253 -82204236 + AT_rich Low_complexity Low_complexity 1 32 0 225 0 0 0 chr12 62078284 62078309 -82204180 + (TG)n Simple_repeat Simple_repeat 2 26 0 428 195 240 71 chr12 62078320 62078474 -82204015 + MER5A DNA MER1_type 3 182 -7 264 240 85 62 chr12 62078360 62078489 -82204000 - MER5A DNA MER1_type -57 132 1 * 303 28 0 0 chr12 62078489 62078525 -82203964 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 57 0 19 chr12 62078535 62078565 -82203924 + AT_rich Low_complexity Low_complexity 1 31 -21 2273 117 39 3 chr12 62078565 62078925 -82203564 - THE1C LTR MaLR -2 373 1 21 57 0 19 chr12 62078925 62078947 -82203542 + AT_rich Low_complexity Low_complexity 31 52 0 300 190 17 0 chr12 62078990 62079048 -82203441 - MIR SINE MIR -123 139 81 416 317 55 25 chr12 62080311 62080513 -82201976 - MIR SINE MIR -51 211 4 302 68 0 0 chr12 62081180 62081224 -82201265 + MADE1 DNA Mariner 35 78 -2 28 48 0 0 chr12 62081242 62081284 -82201205 + AT_rich Low_complexity Low_complexity 1 42 0 185 146 36 73 chr12 62081458 62081513 -82200976 - MIR SINE MIR -24 238 186 5466 163 16 38 chr12 62081615 62083728 -82198761 - L1PA15 LINE L1 -2 6163 4113 2769 179 12 10 chr12 62083748 62084261 -82198228 + MLT2B2 LTR ERVL 2 515 0 318 87 0 0 chr12 62084271 62084317 -82198172 + (TG)n Simple_repeat Simple_repeat 1 46 0 188 327 48 19 chr12 62084346 62084450 -82198039 - MIR3 SINE MIR -15 193 87 341 224 24 163 chr12 62085146 62085392 -82197097 - L1ME4a LINE L1 -12 6109 5898 248 234 39 13 chr12 62085435 62085512 -82196977 + L1MEc LINE L1 127 205 -6191 1627 193 14 0 chr12 62085517 62085802 -82196687 - AluJo SINE Alu -19 293 5 2556 51 0 0 chr12 62085915 62086227 -82196262 + AluYb8 SINE Alu 3 314 -4 668 250 77 0 chr12 62086624 62086792 -82195697 - MIR SINE MIR -2 260 80 1665 283 69 41 chr12 62087141 62088028 -82194461 + L2 LINE L2 2178 3085 -228 284 239 132 54 chr12 62088125 62088292 -82194197 - HAL1 LINE L1 0 2507 2328 249 33 0 0 chr12 62088438 62088468 -82194021 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3078 255 118 53 chr12 62088469 62090309 -82192180 - HAL1 LINE L1 -538 1969 11 403 227 106 28 chr12 62090325 62090466 -82192023 + L2 LINE L2 3159 3310 -3 3745 167 33 8 chr12 62090502 62091231 -82191258 - L1MB8 LINE L1 0 6178 5432 504 231 19 19 chr12 62092301 62092405 -82190084 + MIR3 SINE MIR 86 189 -19 22 0 0 0 chr12 62092699 62092721 -82189768 + AT_rich Low_complexity Low_complexity 1 22 0 369 57 0 0 chr12 62093753 62093806 -82188683 - MADE1 DNA Mariner 0 80 28 180 0 0 0 chr12 62093918 62093938 -82188551 + (TG)n Simple_repeat Simple_repeat 1 20 0 13958 32 1 0 chr12 62094269 62096708 -82185781 - L1PA4 LINE L1 0 6155 3715 307 75 0 19 chr12 62097574 62097627 -82184862 - MADE1 DNA Mariner 0 80 29 7389 37 5 0 chr12 62098090 62099044 -82183445 - L1PA4 LINE L1 0 6155 5199 342 253 77 69 chr12 62099167 62099428 -82183061 - L1MEd LINE L1 -4944 1175 913 560 305 129 26 chr12 62099457 62099729 -82182760 + L2 LINE L2 2148 2447 -867 447 257 175 10 chr12 62100128 62100334 -82182155 + MIR SINE MIR 2 241 -21 15610 74 3 3 chr12 62100523 62104313 -82178176 + L1M2 LINE L1 1 3684 -2462 27691 47 35 2 chr12 62104413 62108103 -82174386 - L1P LINE L1 -2329 3817 6 1024 122 0 0 chr12 62108103 62108242 -82174247 - AluSg SINE Alu -170 140 2 1926 143 21 19 chr12 62108242 62108621 -82173868 - L1M1 LINE L1 -631 5669 5290 1061 199 34 67 chr12 62108691 62109048 -82173441 - L1MC5 LINE L1 -385 7576 7232 434 227 47 20 chr12 62109132 62109282 -82173207 - L1MD3 LINE L1 -11 7984 7831 251 296 41 20 chr12 62109963 62110061 -82172428 - MIR3 SINE MIR -6 202 103 1646 130 32 75 chr12 62110062 62110408 -82172081 + MER2 DNA MER2_type 1 331 -14 2507 95 46 0 chr12 62113947 62114295 -82168194 - THE1B LTR MaLR 0 364 1 243 228 44 44 chr12 62115357 62115471 -82167018 + L1ME LINE L1 5774 5887 -234 827 310 42 0 chr12 62116581 62116820 -82165669 + MIR SINE MIR 14 262 0 683 248 152 35 chr12 62117693 62118068 -82164421 + MER50 LTR ERV1 18 436 -298 1116 98 0 12 chr12 62118137 62118301 -82164188 + MER50 LTR ERV1 573 734 0 485 293 20 0 chr12 62118440 62118590 -82163899 - L2 LINE L2 -2 3311 3159 1999 116 76 17 chr12 62118625 62118979 -82163510 - THE1C LTR MaLR 0 375 1 2262 112 69 11 chr12 62118979 62119354 -82163135 - THE1C-int LTR MaLR 0 1580 1184 180 0 0 0 chr12 62119369 62119389 -82163100 + (GAATG)n Simple_repeat Simple_repeat 5 24 0 456 305 106 16 chr12 62119399 62119700 -82162789 - L2 LINE L2 -246 3067 2739 342 344 208 12 chr12 62120238 62120719 -82161770 + L2 LINE L2 2482 3059 -213 1275 213 40 26 chr12 62121225 62121573 -82160916 - MLT1A2 LTR MaLR -20 354 2 1266 145 10 0 chr12 62121634 62121841 -82160648 + MER58A DNA MER1_type 13 221 -3 260 204 0 19 chr12 62121841 62121895 -82160594 + MIR3 SINE MIR 151 203 -5 290 351 18 0 chr12 62122364 62122475 -82160014 - MIR3 SINE MIR -1 207 95 1687 181 3 29 chr12 62122531 62122845 -82159644 + AluJo SINE Alu 1 306 -6 1326 119 22 9 chr12 62122924 62123151 -82159338 + MER50 LTR ERV1 1 230 -504 * 1565 124 10 64 chr12 62123148 62123446 -82159043 + MER50 LTR ERV1 435 716 -18 659 230 29 1 chr12 62124868 62125051 -82157438 - MLT1B LTR MaLR -19 371 167 2116 117 38 46 chr12 62125261 62125628 -82156861 - THE1B LTR MaLR 0 364 1 1136 233 82 9 chr12 62126019 62126349 -82156140 + L1ME3 LINE L1 5584 5937 -225 588 286 69 11 chr12 62126550 62126739 -82155750 - MIR3 SINE MIR -7 201 2 3694 248 50 16 chr12 62127229 62128466 -82154023 + L1MEc LINE L1 35 1185 -4928 2638 155 16 89 chr12 62128477 62129038 -82153451 + MLT2B1 LTR ERVL 1 520 0 4032 171 42 69 chr12 62129043 62129960 -82152529 + ERVL-B1 LTR ERVL 6 898 -4866 1928 137 7 92 chr12 62130061 62130483 -82152006 - MER65A LTR ERV1 -59 386 1 17706 159 16 13 chr12 62130483 62133609 -82148880 + ERVL-B1 LTR ERVL 1081 4215 -1549 603 100 154 23 chr12 62133612 62133742 -82148747 + ERVL-B1 LTR ERVL 5363 5509 -255 279 83 67 50 chr12 62133745 62133805 -82148684 + ERVL-B1 LTR ERVL 5449 5509 -255 1497 137 25 38 chr12 62133808 62134122 -82148367 + ERVL-B1 LTR ERVL 5449 5758 -6 1339 227 109 28 chr12 62134123 62134581 -82147908 + MLT2B1 LTR ERVL 16 414 0 1027 228 22 58 chr12 62134581 62134941 -82147548 + L1ME1 LINE L1 5798 6144 -22 23 78 0 0 chr12 62134964 62135015 -82147474 + AT_rich Low_complexity Low_complexity 1 51 0 2030 102 0 7 chr12 62135124 62135399 -82147090 + AluSx SINE Alu 1 273 -39 1052 92 5 27 chr12 62135400 62135584 -82146905 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 587 219 0 22 chr12 62135605 62135788 -82146701 + GA-rich Low_complexity Low_complexity 1 179 0 35 0 0 0 chr12 62135944 62135979 -82146510 + AT_rich Low_complexity Low_complexity 1 35 0 411 252 18 18 chr12 62136152 62136263 -82146226 + MER5A DNA MER1_type 7 117 -72 1776 250 35 35 chr12 62136437 62137000 -82145489 + L1M4 LINE L1 16 578 -5964 771 255 5 0 chr12 62137008 62137212 -82145277 + L1PA14 LINE L1 2537 2741 -3405 13347 24 0 27 chr12 62137312 62139676 -82142813 + L1PA2 LINE L1 3817 6155 0 1446 94 0 0 chr12 62139678 62139869 -82142620 + AluSg/x SINE Alu 120 310 0 1502 138 32 112 chr12 62139870 62140246 -82142243 + L1MA8 LINE L1 5667 6012 -279 294 225 34 0 chr12 62140263 62140352 -82142137 + L1MB3 LINE L1 6092 6183 0 285 278 96 17 chr12 62140361 62140476 -82142013 + MLT1K LTR MaLR 401 524 -64 465 287 44 28 chr12 62140533 62140969 -82141520 - L1M4 LINE L1 -2768 3378 2936 4971 165 279 6 chr12 62141108 62141622 -82140867 + L1PA14 LINE L1 2793 3165 -2981 387 0 0 0 chr12 62141622 62141665 -82140824 + (CA)n Simple_repeat Simple_repeat 2 44 0 4971 165 279 6 chr12 62141665 62142541 -82139948 + L1PA14 LINE L1 3165 4563 -1583 3854 143 16 0 chr12 62142541 62143170 -82139319 + L1PA14 LINE L1 5522 6161 0 1295 226 33 8 chr12 62143170 62143532 -82138957 + L1M4 LINE L1 1331 1701 -4841 268 287 10 0 chr12 62144000 62144101 -82138388 - MER94 DNA DNA -32 102 1 539 258 216 6 chr12 62144714 62144881 -82137608 + MIR SINE MIR 44 245 -17 248 258 11 54 chr12 62145432 62145525 -82136964 + CT-rich Low_complexity Low_complexity 6 94 0 1560 184 82 40 chr12 62145873 62146253 -82136236 - MSTD LTR MaLR 0 396 1 227 61 91 0 chr12 62146394 62146427 -82136062 + MLT1I LTR MaLR 101 136 -273 2661 152 24 0 chr12 62146446 62146861 -82135628 - MSTB LTR MaLR 0 426 2 582 242 221 12 chr12 62146911 62147155 -82135334 + MLT1H LTR MaLR 255 549 0 214 272 259 0 chr12 62147209 62147290 -82135199 - MER91C DNA MER1_type -37 103 2 250 273 13 0 chr12 62147492 62147569 -82134920 + (TA)n Simple_repeat Simple_repeat 2 79 0 350 318 110 19 chr12 62148350 62148504 -82133985 + MIR3 SINE MIR 36 203 -5 340 213 25 25 chr12 62148683 62148763 -82133726 - L2 LINE L2 0 3313 3234 21 71 0 0 chr12 62149778 62149820 -82132669 + AT_rich Low_complexity Low_complexity 1 42 0 575 289 89 18 chr12 62149837 62150117 -82132372 + L1MC4a LINE L1 6459 6758 -1050 5222 117 8 1 chr12 62150117 62150956 -82131533 + L1P LINE L1 4422 5266 -880 449 280 47 27 chr12 62151148 62151448 -82131041 - L1M4 LINE L1 -3523 2623 2318 504 289 20 33 chr12 62152110 62152307 -82130182 + MIR SINE MIR 18 206 -56 633 307 108 40 chr12 62153188 62153904 -82128585 + L2 LINE L2 2502 3263 -9 300 206 41 0 chr12 62153938 62154011 -82128478 - MER116 DNA Mariner -4 76 1 839 160 8 0 chr12 62154835 62154960 -82127529 + FLAM_A SINE Alu 1 126 -7 314 259 28 56 chr12 62155569 62155677 -82126812 + MIR SINE MIR 38 142 -66 888 305 153 8 chr12 62155781 62156312 -82126177 + MLT1L LTR MaLR 8 615 0 2755 183 70 49 chr12 62156569 62157182 -82125307 + MLT1E2 LTR MaLR 1 626 0 216 0 0 0 chr12 62157520 62157544 -82124945 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 186 171 0 0 chr12 62157809 62157850 -82124639 + A-rich Low_complexity Low_complexity 1 41 0 29 28 0 0 chr12 62158142 62158178 -82124311 + AT_rich Low_complexity Low_complexity 1 36 0 1868 122 72 0 chr12 62158835 62159113 -82123376 - AluJb SINE Alu -14 298 1 223 270 99 63 chr12 62159222 62159333 -82123156 - L2 LINE L2 -4 3268 3154 1204 196 33 20 chr12 62159952 62160197 -82122292 + MLT1D LTR MaLR 23 270 -235 21 0 0 0 chr12 62160210 62160231 -82122258 + AT_rich Low_complexity Low_complexity 1 21 0 51 17 0 0 chr12 62160524 62160582 -82121907 + AT_rich Low_complexity Low_complexity 1 58 0 368 214 14 0 chr12 62160773 62160843 -82121646 + MER21B LTR ERV1 19 89 -774 3670 177 98 29 chr12 62160844 62161250 -82121239 + MER21B LTR ERV1 41 418 -445 1994 186 11 32 chr12 62161250 62161620 -82120869 + MLT1A1 LTR MaLR 4 365 0 3670 177 98 29 chr12 62161620 62161982 -82120507 + MER21B LTR ERV1 418 862 -1 390 258 21 21 chr12 62161990 62162083 -82120406 + MIR SINE MIR 5 97 -165 * 603 198 367 0 chr12 62162071 62162248 -82120241 - MIR SINE MIR -13 249 8 2546 53 0 0 chr12 62162255 62162556 -82119933 - AluY SINE Alu -10 301 1 2046 185 26 63 chr12 62162602 62162913 -82119576 - MLT2D LTR ERVL -2 412 120 1975 131 28 7 chr12 62162913 62163203 -82119286 + AluSx SINE Alu 1 296 -16 2046 185 26 63 chr12 62163203 62163319 -82119170 - MLT2D LTR ERVL -294 120 1 367 275 156 0 chr12 62164219 62164328 -82118161 + MIR SINE MIR 17 142 -120 221 0 0 33 chr12 62165003 62165033 -82117456 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 186 133 0 0 chr12 62165175 62165205 -82117284 + (GGCTG)n Simple_repeat Simple_repeat 5 34 0 1626 219 114 22 chr12 62165612 62166060 -82116429 - MER39 LTR ERV1 0 707 219 1265 196 52 54 chr12 62167421 62167473 -82115016 - MLT1B LTR MaLR -3 502 451 3612 136 13 19 chr12 62167473 62168003 -82114486 + MER1A DNA MER1_type 1 527 0 1265 196 52 54 chr12 62168003 62168329 -82114160 - MLT1B LTR MaLR -54 451 1 213 322 66 33 chr12 62168842 62168963 -82113526 + L2 LINE L2 3132 3256 -16 561 205 0 0 chr12 62169910 62170018 -82112471 + MER5A DNA MER1_type 4 111 -78 540 275 101 66 chr12 62171318 62171773 -82110716 + MLT1K LTR MaLR 96 566 -22 758 86 0 0 chr12 62172187 62172280 -82110209 + AluSg SINE Alu 2 94 -216 237 286 0 0 chr12 62172281 62172337 -82110152 + L2 LINE L2 2916 2971 -343 287 288 82 0 chr12 62172546 62172619 -82109870 + L2 LINE L2 3192 3270 -2 406 255 259 28 chr12 62172733 62172949 -82109540 - MLT1J2 LTR MaLR -118 332 67 2331 237 40 40 chr12 62173699 62174294 -82108195 - MLT1G1 LTR MaLR 0 595 1 275 273 62 23 chr12 62175319 62175447 -82107042 + L1MC4 LINE L1 7910 8042 0 224 226 132 75 chr12 62175541 62175700 -82106789 - L2 LINE L2 -688 2626 2459 212 241 168 52 chr12 62175740 62175931 -82106558 - L2 LINE L2 -963 2351 2139 2037 157 51 3 chr12 62176735 62177066 -82105423 + MER7A DNA MER2_type 2 346 0 316 308 136 42 chr12 62177412 62177720 -82104769 + MLT1J1 LTR MaLR 69 405 -41 724 271 69 52 chr12 62178155 62178697 -82103792 - MLT1L LTR MaLR -22 593 1 180 0 0 0 chr12 62180399 62180419 -82102070 + (A)n Simple_repeat Simple_repeat 1 20 0 639 293 93 16 chr12 62180489 62180800 -82101689 + L1MC4a LINE L1 6424 6758 -1050 6448 93 29 6 chr12 62180800 62182515 -82099974 + L1PA8 LINE L1 4422 6171 -1 1005 214 115 66 chr12 62182519 62182999 -82099490 + L1MC5 LINE L1 6749 7243 -733 949 248 68 82 chr12 62183104 62183838 -82098651 + L1MC5 LINE L1 7210 7933 -28 592 351 64 17 chr12 62184062 62184421 -82098068 - L2 LINE L2 0 3272 2897 1280 178 29 140 chr12 62184423 62184897 -82097592 + MLT2B1 LTR ERVL 1 516 -4 436 335 25 6 chr12 62185031 62185192 -82097297 - L2 LINE L2 -553 2761 2598 181 409 78 17 chr12 62185227 62185342 -82097147 + L2 LINE L2 3077 3198 -74 408 355 47 9 chr12 62185378 62185589 -82096900 - MIR SINE MIR -41 221 3 600 244 53 0 chr12 62186943 62187074 -82095415 + MIR SINE MIR 11 148 -114 339 100 0 0 chr12 62187075 62187125 -82095364 - MADE1 DNA Mariner -1 79 30 259 283 94 19 chr12 62187126 62187232 -82095257 + MIR SINE MIR 149 262 0 190 259 69 0 chr12 62188114 62188172 -82094317 + L2 LINE L2 3210 3271 -1 4687 68 0 0 chr12 62188463 62189023 -82093466 + L1PA7 LINE L1 5594 6153 -1 1619 150 39 14 chr12 62189298 62189584 -82092905 - MLT1A1 LTR MaLR -72 293 1 255 250 191 15 chr12 62189584 62189720 -82092769 + L1MEd LINE L1 695 854 -5265 * 577 211 128 0 chr12 62189715 62189895 -82092594 + L1ME3A LINE L1 5760 5962 -208 21 0 0 0 chr12 62190121 62190142 -82092347 + AT_rich Low_complexity Low_complexity 1 21 0 449 226 84 32 chr12 62190199 62190457 -82092032 + L1M2 LINE L1 5264 5532 -759 * 590 231 118 41 chr12 62190452 62190647 -82091842 + L1MC4a LINE L1 5563 5772 -349 311 267 84 8 chr12 62190702 62190833 -82091656 - MLT1L LTR MaLR -51 564 424 2581 26 10 3 chr12 62190857 62191159 -82091330 - AluY SINE Alu -7 304 1 383 264 8 41 chr12 62191241 62191362 -82091127 + MLT1H LTR MaLR 126 242 -307 428 190 66 66 chr12 62191448 62191585 -82090904 + MLT1H LTR MaLR 411 547 -2 394 269 29 97 chr12 62191593 62191857 -82090632 - MLT1L LTR MaLR -196 419 109 328 314 0 58 chr12 62191967 62192139 -82090350 + L1MC4a LINE L1 5772 5933 -1875 7563 58 6 2 chr12 62192600 62194200 -82088289 + L1PA8 LINE L1 4547 6160 -12 21 0 0 0 chr12 62194700 62194721 -82087768 + AT_rich Low_complexity Low_complexity 1 21 0 2110 107 10 0 chr12 62195332 62195630 -82086859 - AluSc SINE Alu -8 301 1 2280 74 20 7 chr12 62195655 62195954 -82086535 + AluSp SINE Alu 1 303 -10 212 348 143 30 chr12 62196036 62196527 -82085962 + L2 LINE L2 2342 2887 -427 1809 136 29 72 chr12 62196794 62197140 -82085349 - MER2 DNA MER2_type -14 331 1 243 296 41 20 chr12 62197141 62197239 -82085250 + MIR3 SINE MIR 103 202 -6 505 227 47 20 chr12 62197920 62198070 -82084419 + L1MD3 LINE L1 7831 7984 -11 1225 199 34 67 chr12 62198154 62198511 -82083978 + L1MC5 LINE L1 7232 7576 -385 28 0 0 0 chr12 62198549 62198577 -82083912 + AT_rich Low_complexity Low_complexity 1 28 0 53 69 0 0 chr12 62198621 62198723 -82083766 + AT_rich Low_complexity Low_complexity 1 102 0 1854 33 0 5 chr12 62200050 62200260 -82082229 + L1PA7 LINE L1 5939 6147 -7 22 35 0 0 chr12 62200298 62200327 -82082162 + AT_rich Low_complexity Low_complexity 1 29 0 959 229 51 91 chr12 62200611 62200986 -82081503 + LTR16B LTR ERVL 105 464 0 1000 228 24 1 chr12 62201285 62201497 -82080992 - ERVL LTR ERVL -2080 3431 3187 591 275 36 23 chr12 62201515 62201824 -82080665 - L1M4 LINE L1 -846 5300 4988 1178 284 124 19 chr12 62201933 62202629 -82079860 - L1M4 LINE L1 -1300 4846 4078 2108 143 21 19 chr12 62202695 62203074 -82079415 + L1M1 LINE L1 5290 5669 -631 1023 122 0 0 chr12 62203074 62203213 -82079276 + AluSg SINE Alu 2 140 -170 37919 42 34 2 chr12 62203213 62208102 -82074387 + L1P LINE L1 6 5032 -1114 377 239 91 0 chr12 62208306 62208394 -82074095 + MER58 DNA MER1_type 4 99 -2321 402 187 132 0 chr12 62208405 62208496 -82073993 + MER58 DNA MER1_type 2317 2419 -1 293 367 0 0 chr12 62208632 62208722 -82073767 - MIR SINE MIR -68 140 51 183 42 0 0 chr12 62208894 62208918 -82073571 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2278 10 53 0 chr12 62213320 62213623 -82068866 - L1PA3 LINE L1 -221 5934 5616 32101 109 12 61 chr12 62213625 62219703 -82062786 - L1P3 LINE L1 -378 5776 12 2145 114 3 19 chr12 62220814 62221130 -82061359 - AluSx SINE Alu -1 311 1 2137 160 3 6 chr12 62221137 62221475 -82061014 + MLT1A1 LTR MaLR 29 365 0 855 250 20 20 chr12 62221475 62221671 -82060818 - MIR SINE MIR -43 219 24 21 36 0 0 chr12 62221870 62221898 -82060591 + AT_rich Low_complexity Low_complexity 1 28 0 377 90 51 26 chr12 62221902 62221980 -82060509 - L1MC5 LINE L1 -31 7930 7851 847 264 48 24 chr12 62222194 62222444 -82060045 - MIR SINE MIR -2 260 5 399 351 170 21 chr12 62222446 62223216 -82059273 + L2 LINE L2 1996 2880 -434 235 244 94 71 chr12 62223356 62223483 -82059006 + L2 LINE L2 2981 3110 -162 322 269 0 0 chr12 62223491 62223569 -82058920 + MLT1L LTR MaLR 1 78 -537 1732 181 14 0 chr12 62223604 62223886 -82058603 + AluJo SINE Alu 1 286 -26 923 188 20 51 chr12 62223892 62224089 -82058400 + AluJo SINE Alu 104 294 -18 523 256 128 76 chr12 62224094 62224476 -82058013 + MLT1J LTR MaLR 108 509 -2 394 249 62 34 chr12 62224811 62224988 -82057501 + LTR16C LTR ERVL 225 406 -85 809 179 15 0 chr12 62225156 62225290 -82057199 + L1M4c LINE L1 18 153 -6231 9280 154 45 77 chr12 62225292 62225347 -82057142 + L1M4c LINE L1 507 562 -5820 3587 60 0 11 chr12 62225347 62225783 -82056706 + L1PA7 LINE L1 5724 6154 0 9280 154 45 77 chr12 62225783 62227106 -82055383 + L1M4c LINE L1 562 1769 -4613 1561 197 3 11 chr12 62227106 62227390 -82055099 + AluJo SINE Alu 1 282 -30 9280 154 45 77 chr12 62227390 62228605 -82053884 + L1M4c LINE L1 1769 3022 -3360 4415 173 86 93 chr12 62228605 62229850 -82052639 + MER52A LTR ERV1 1 1125 -153 2479 27 10 10 chr12 62229952 62230281 -82052208 + L1PA3 LINE L1 5863 6155 0 3242 43 8 0 chr12 62230281 62230651 -82051838 + L1PA7 LINE L1 5769 6141 -13 559 269 67 52 chr12 62231198 62231466 -82051023 + MLT1L LTR MaLR 344 615 0 572 276 0 26 chr12 62231737 62231893 -82050596 + MIR SINE MIR 40 191 -71 2088 151 86 6 chr12 62232038 62232376 -82050113 - MLT1A1 LTR MaLR 0 365 1 316 243 97 10 chr12 62233719 62233822 -82048667 + L1ME LINE L1 5560 5671 -450 181 211 0 0 chr12 62234234 62234272 -82048217 - L2 LINE L2 -9 3304 3267 207 162 0 0 chr12 62234888 62234925 -82047564 + GA-rich Low_complexity Low_complexity 2 38 0 2257 124 59 34 chr12 62235884 62236239 -82046250 - THE1B LTR MaLR 0 364 1 1184 269 114 29 chr12 62236712 62237158 -82045331 - MLT2F LTR ERVL 0 663 180 4721 251 42 25 chr12 62237184 62238385 -82044104 - ERVL LTR ERVL -920 4844 3623 1214 152 21 0 chr12 62238390 62238581 -82043908 + MER2 DNA MER2_type 4 198 -147 303 236 14 14 chr12 62238616 62238688 -82043801 + MER2 DNA MER2_type 268 339 -6 1279 268 156 0 chr12 62238690 62239112 -82043377 - ERVL LTR ERVL -2073 3581 3094 21 0 0 0 chr12 62239278 62239299 -82043190 + AT_rich Low_complexity Low_complexity 1 21 0 29132 49 1 0 chr12 62241251 62245573 -82036916 - L1PA5 LINE L1 0 6154 1831 43086 39 22 1 chr12 62245574 62251622 -82030867 + L1PA3 LINE L1 1 6175 0 13832 93 1 0 chr12 62251622 62253452 -82029037 - L1PA5 LINE L1 -4305 1841 11 7940 168 29 25 chr12 62253470 62255104 -82027385 - L1 LINE L1 -1744 4402 2762 6109 142 33 35 chr12 62255105 62255239 -82027250 - L1MA3 LINE L1 0 7007 6874 2199 135 0 7 chr12 62255239 62255542 -82026947 - AluSx SINE Alu -11 301 1 6109 142 33 35 chr12 62255542 62257599 -82024890 - L1MA3 LINE L1 -133 6874 4820 1996 138 41 0 chr12 62257610 62257901 -82024588 + AluSg SINE Alu 1 303 -7 1647 126 22 4 chr12 62257901 62258172 -82024317 - L1MA3 LINE L1 -6572 277 2 625 277 70 45 chr12 62259174 62259416 -82023073 + MIR SINE MIR 1 248 -14 2667 212 36 19 chr12 62261657 62265182 -82017307 + L1PA5 LINE L1 369 3831 -2974 2667 59 3 3 chr12 62265182 62265521 -82016968 + L1PA5 LINE L1 6461 6799 -6 2667 212 36 19 chr12 62265521 62267141 -82015348 + L1PA5 LINE L1 3831 5421 -1384 3300 60 0 0 chr12 62267141 62267556 -82014933 - L1PA5 LINE L1 0 6154 5740 2667 212 36 19 chr12 62267556 62267791 -82014698 + L1PA5 LINE L1 5421 5650 -1155 2037 37 0 0 chr12 62267791 62268034 -82014455 + L1PA4 LINE L1 5911 6154 -1 2667 212 36 19 chr12 62268034 62268130 -82014359 + L1PA5 LINE L1 5650 6799 -6 1612 170 52 25 chr12 62268133 62268498 -82013991 + THE1C LTR MaLR 1 375 0 8799 137 13 35 chr12 62268500 62270049 -82012440 + THE1C-int LTR MaLR 3 1516 -64 3075 115 52 37 chr12 62270066 62270640 -82011849 + L1PBa LINE L1 10 592 -6271 7652 99 43 26 chr12 62270747 62272057 -82010432 + L1PBa LINE L1 845 2176 -4687 429 294 96 27 chr12 62272160 62272379 -82010110 + MIR SINE MIR 3 241 -21 375 145 24 12 chr12 62272431 62272514 -82009975 + MSTA-int LTR MaLR 1568 1651 0 1737 135 193 14 chr12 62272514 62272877 -82009612 + MSTA LTR MaLR 1 428 0 2552 136 2 88 chr12 62272877 62273400 -82009089 + L1PA15 LINE L1 5688 6165 0 303 264 103 63 chr12 62273400 62273574 -82008915 + L1MC5 LINE L1 7732 7912 -49 42 71 0 0 chr12 62273576 62273660 -82008829 + AT_rich Low_complexity Low_complexity 1 84 0 2064 231 7 9 chr12 62273727 62274168 -82008321 + MLT1F LTR MaLR 1 440 -102 267 181 86 105 chr12 62274191 62274296 -82008193 - MLT2F LTR ERVL -20 444 342 769 136 126 35 chr12 62274424 62274622 -82007867 - MLT1E3 LTR MaLR -350 274 59 243 0 0 0 chr12 62274623 62274650 -82007839 + (TG)n Simple_repeat Simple_repeat 1 27 0 618 226 7 14 chr12 62274656 62274802 -82007687 - MLT2F LTR ERVL -517 146 2 387 209 9 36 chr12 62274803 62274913 -82007576 + MLT1F LTR MaLR 436 542 0 234 289 40 0 chr12 62275374 62275450 -82007039 + MIR SINE MIR 73 151 -111 353 289 0 0 chr12 62277004 62277094 -82005395 + L1MC4 LINE L1 6614 6703 -1339 311 301 21 0 chr12 62277018 62277111 -82005378 - L1MC4 LINE L1 -1339 6703 6609 * 2267 112 0 3 chr12 62277957 62278269 -82004220 + AluSq SINE Alu 1 311 -2 467 213 294 7 chr12 62278270 62278406 -82004083 - MER5B DNA MER1_type -3 175 1 479 214 29 10 chr12 62278686 62278789 -82003700 + MER5A DNA MER1_type 8 112 -77 1811 143 155 14 chr12 62278796 62279229 -82003260 + LTR54B LTR ERV1 3 496 -2 243 132 0 0 chr12 62279835 62279873 -82002616 - MER58B DNA MER1_type -20 321 284 2223 109 52 20 chr12 62279874 62280221 -82002268 + THE1B LTR MaLR 1 358 -6 688 148 26 0 chr12 62280244 62280359 -82002130 - MER58A DNA MER1_type 0 161 44 344 239 48 42 chr12 62280384 62280551 -82001938 + L1MC5 LINE L1 7711 7878 -83 941 206 29 0 chr12 62280554 62280724 -82001765 + MER5A DNA MER1_type 3 177 -12 189 0 0 0 chr12 62281159 62281180 -82001309 + (TG)n Simple_repeat Simple_repeat 2 22 0 4054 62 6 0 chr12 62281185 62281697 -82000792 - L1PA5 LINE L1 0 6154 5640 34459 96 11 10 chr12 62281787 62287925 -81994564 + L1PA6 LINE L1 11 6154 0 21 0 0 0 chr12 62288778 62288799 -81993690 + AT_rich Low_complexity Low_complexity 1 21 0 885 288 70 26 chr12 62289015 62289455 -81993034 - L2 LINE L2 -1 3312 2749 1700 171 42 3 chr12 62289896 62290183 -81992306 + AluJo SINE Alu 1 298 -14 1679 249 83 54 chr12 62290221 62290959 -81991530 - LTR41 LTR ERVL -12 761 3 498 338 103 5 chr12 62291366 62291579 -81990910 + MIR SINE MIR 5 238 -24 700 184 18 0 chr12 62292111 62292225 -81990264 + AluJo SINE Alu 1 116 -186 2361 104 0 0 chr12 62292239 62292537 -81989952 - AluSx SINE Alu -14 298 1 23 0 0 0 chr12 62292538 62292561 -81989928 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr12 62293599 62293649 -81988840 + AT_rich Low_complexity Low_complexity 1 50 0 234 0 0 0 chr12 62293814 62293840 -81988649 + (TG)n Simple_repeat Simple_repeat 1 26 0 1631 208 12 0 chr12 62294373 62294700 -81987789 + MER58B DNA MER1_type 1 331 -10 291 246 0 0 chr12 62294707 62294768 -81987721 + MIR SINE MIR 199 259 -3 232 79 53 0 chr12 62295102 62295140 -81987349 + MLT1I LTR MaLR 98 137 -272 449 254 83 42 chr12 62296817 62297057 -81985432 + MLT1I LTR MaLR 50 299 -110 1106 165 6 0 chr12 62297737 62297907 -81984582 + FAM SINE Alu 2 172 -3 2685 179 57 8 chr12 62298412 62298943 -81983546 + MER52A LTR ERV1 1115 1671 -84 291 122 20 0 chr12 62298941 62298990 -81983499 + MER52C LTR ERV1 1228 1277 -1 * 1038 148 27 55 chr12 62299017 62299200 -81983289 + AluJo SINE Alu 105 282 -30 22 0 0 0 chr12 62299205 62299227 -81983262 + AT_rich Low_complexity Low_complexity 1 22 0 5524 208 14 6 chr12 62299231 62300537 -81981952 + L1MB3 LINE L1 3684 5000 -1146 805 173 8 8 chr12 62300541 62300674 -81981815 + FLAM_C SINE Alu 1 133 -10 985 218 66 9 chr12 62300703 62301045 -81981444 + L1MB3 LINE L1 4994 5352 -814 4442 167 20 6 chr12 62301327 62302171 -81980318 + L1MB3 LINE L1 5321 6176 -7 27 29 0 0 chr12 62302453 62302487 -81980002 + AT_rich Low_complexity Low_complexity 1 34 0 571 245 203 0 chr12 62303845 62304057 -81978432 - MIR SINE MIR -2 260 6 467 332 56 30 chr12 62304298 62304345 -81978144 - MIR SINE MIR -5 257 213 2407 114 31 14 chr12 62304345 62304703 -81977786 - THE1B LTR MaLR 0 364 1 467 332 56 30 chr12 62304703 62304887 -81977602 - MIR SINE MIR -49 213 20 324 102 0 0 chr12 62304911 62304960 -81977529 + (CA)n Simple_repeat Simple_repeat 2 50 0 2498 66 0 3 chr12 62305016 62305319 -81977170 + AluY SINE Alu 1 302 -9 250 169 44 73 chr12 62305324 62305460 -81977029 + (TAA)n Simple_repeat Simple_repeat 1 132 0 882 227 140 34 chr12 62305507 62305887 -81976602 + MER57A LTR ERV1 9 403 0 253 345 127 24 chr12 62305889 62306054 -81976435 + L3 LINE CR1 1391 1572 -5 1307 283 222 16 chr12 62306182 62307347 -81975142 + L2 LINE L2 1882 3309 -4 4627 74 2 0 chr12 62309244 62309836 -81972653 - L1PA8 LINE L1 0 6172 5580 337 297 35 7 chr12 62310014 62310159 -81972330 + MER103 DNA DNA 8 156 -10 317 231 28 65 chr12 62310278 62310386 -81972103 + MIR SINE MIR 105 208 -54 21 36 0 0 chr12 62310776 62310804 -81971685 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 62310882 62310907 -81971582 + AT_rich Low_complexity Low_complexity 1 25 0 203 279 0 0 chr12 62312822 62312865 -81969624 + polypyrimidine Low_complexity Low_complexity 2 44 0 24 32 0 0 chr12 62313137 62313168 -81969321 + AT_rich Low_complexity Low_complexity 1 31 0 364 210 150 24 chr12 62313196 62313363 -81969126 + MER53 DNA DNA 1 188 -1 1591 164 61 17 chr12 62313796 62313970 -81968519 - AluJo SINE Alu -6 306 112 279 0 0 0 chr12 62313970 62314001 -81968488 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1591 164 61 17 chr12 62314001 62314119 -81968370 - AluJo SINE Alu -200 112 1 301 225 0 28 chr12 62314172 62314243 -81968246 - MER5A DNA MER1_type -114 75 7 1166 127 12 0 chr12 62315201 62315366 -81967123 - AluSg/x SINE Alu -19 293 127 3197 59 24 12 chr12 62315370 62315796 -81966693 - L1PA7 LINE L1 0 6154 5724 335 91 127 0 chr12 62315796 62315851 -81966638 - L1M4c LINE L1 -5816 568 507 780 178 15 7 chr12 62315853 62315988 -81966501 - L1M4c LINE L1 -6231 153 18 6881 169 39 41 chr12 62316132 62316836 -81965653 + L1M4c LINE L1 1102 1806 -4576 1576 197 3 11 chr12 62316836 62317120 -81965369 + AluJo SINE Alu 1 282 -30 6881 169 39 41 chr12 62317120 62318335 -81964154 + L1M4c LINE L1 1806 3022 -3360 2778 189 108 92 chr12 62318335 62319077 -81963412 + MER52A LTR ERV1 1 754 -1001 648 208 51 17 chr12 62319257 62319435 -81963054 - MIR SINE MIR -14 248 65 237 200 0 36 chr12 62319435 62319490 -81962999 - tRNA-Gln-CAG tRNA tRNA -11 64 12 957 151 0 7 chr12 62319570 62319709 -81962780 - AluJb SINE Alu -17 295 158 2413 102 3 3 chr12 62320243 62320556 -81961933 + AluSp SINE Alu 1 313 0 1463 96 5 0 chr12 62320556 62320743 -81961746 + AluSp SINE Alu 108 295 -18 857 138 0 0 chr12 62320743 62320859 -81961630 - AluJo/FLAM SINE Alu -196 116 1 224 286 190 0 chr12 62321225 62321341 -81961148 + MIR SINE MIR 32 166 -63 1546 170 65 0 chr12 62321780 62322056 -81960433 + AluJb SINE Alu 1 294 -18 1688 143 4 4 chr12 62322842 62323116 -81959373 + AluSx SINE Alu 33 306 0 2357 145 15 89 chr12 62324109 62324672 -81957817 - L1MC/D LINE L1 -636 5708 5186 1590 172 41 14 chr12 62324999 62325289 -81957200 + AluJb SINE Alu 1 298 -14 418 237 49 67 chr12 62325358 62325610 -81956879 + MLT1L LTR MaLR 25 304 -311 1610 68 0 19 chr12 62325610 62325817 -81956672 + L1PA8A LINE L1 5901 6103 -28 817 248 133 13 chr12 62325903 62326137 -81956352 + MLT1L LTR MaLR 350 611 -4 652 247 22 35 chr12 62326711 62326942 -81955547 - MLT1L LTR MaLR -363 252 25 551 152 0 38 chr12 62326938 62327043 -81955446 + LTR67 LTR ERVL 457 557 0 * 1394 143 108 12 chr12 62327336 62327595 -81954894 + AluJb SINE Alu 11 294 -18 682 130 87 0 chr12 62327605 62327720 -81954769 + Tigger4(Zombi) DNA MER2_type 2 126 -2605 * 3712 100 8 6 chr12 62327718 62328239 -81954250 + Tigger4(Zombi) DNA MER2_type 2210 2731 0 1235 189 27 93 chr12 62328239 62328685 -81953804 - L1MC5 LINE L1 -854 6954 6499 2183 135 0 0 chr12 62328901 62329204 -81953285 + AluSx SINE Alu 1 303 -9 1655 234 94 29 chr12 62329204 62329716 -81952773 + MLT1E2 LTR MaLR 82 626 0 480 289 184 43 chr12 62330094 62330540 -81951949 + L2 LINE L2 2804 3312 -1 332 269 29 103 chr12 62330979 62331154 -81951335 + LTR16C LTR ERVL 330 491 0 370 310 8 23 chr12 62331200 62331329 -81951160 - MLT1L LTR MaLR -369 246 120 2489 50 10 7 chr12 62331395 62331695 -81950794 + AluSp SINE Alu 1 301 -12 385 322 59 20 chr12 62332258 62332460 -81950029 + MIR SINE MIR 20 229 -33 869 92 69 15 chr12 62333195 62333326 -81949163 - LTR7 LTR ERV1 -312 138 1 648 189 73 94 chr12 62333329 62333439 -81949050 + HAL1 LINE L1 2227 2338 -169 2088 135 0 3 chr12 62333439 62333736 -81948753 + AluSx SINE Alu 1 296 -16 648 189 73 94 chr12 62333736 62333911 -81948578 + HAL1 LINE L1 2338 2506 -1 1818 171 0 3 chr12 62334143 62334430 -81948059 + AluJo SINE Alu 1 286 -26 198 0 0 0 chr12 62334430 62334452 -81948037 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 233 227 0 13 chr12 62334630 62334705 -81947784 + CT-rich Low_complexity Low_complexity 1 74 0 300 207 164 52 chr12 62334764 62334880 -81947609 + L2 LINE L2 3144 3272 0 7726 137 11 11 chr12 62335150 62336720 -81945769 - L1P3 LINE L1 -594 5560 3995 334 237 250 0 chr12 62337216 62337368 -81945121 - MIR SINE MIR -67 195 6 395 332 56 30 chr12 62337609 62337656 -81944833 - MIR SINE MIR -5 257 213 2361 121 36 14 chr12 62337656 62338012 -81944477 - THE1B LTR MaLR 0 364 1 395 332 56 30 chr12 62338012 62338196 -81944293 - MIR SINE MIR -49 213 20 324 102 0 0 chr12 62338220 62338269 -81944220 + (CA)n Simple_repeat Simple_repeat 2 50 0 2570 61 0 6 chr12 62338325 62338636 -81943853 + AluY SINE Alu 1 309 -2 1386 137 59 22 chr12 62338636 62338832 -81943657 + L1M4 LINE L1 5196 5410 -774 2039 113 69 33 chr12 62338832 62339194 -81943295 - THE1C LTR MaLR 0 375 1 1386 137 59 22 chr12 62339194 62339341 -81943148 + L1M4 LINE L1 5410 5550 -634 497 223 58 0 chr12 62339324 62339445 -81943044 + L1MB7 LINE L1 6012 6139 -45 * 22 0 0 0 chr12 62339464 62339486 -81943003 + AT_rich Low_complexity Low_complexity 1 22 0 2219 104 0 3 chr12 62339486 62339774 -81942715 - AluSg SINE Alu -21 289 3 529 224 42 36 chr12 62340856 62341021 -81941468 - MER112 DNA MER1_type -12 248 83 2185 105 0 7 chr12 62341104 62341390 -81941099 + AluSx SINE Alu 1 284 -28 193 329 0 14 chr12 62341390 62341460 -81941029 - L2 LINE L2 -18 3254 3186 241 220 35 139 chr12 62341731 62341904 -81940585 + MIR SINE MIR 58 212 -50 186 298 0 0 chr12 62341932 62341979 -81940510 - MIR SINE MIR -68 140 94 378 224 179 28 chr12 62343558 62343737 -81938752 + MIR SINE MIR 57 262 0 890 239 30 0 chr12 62344500 62344701 -81937788 + MIR SINE MIR 6 212 -50 21 0 0 0 chr12 62345684 62345705 -81936784 + GC_rich Low_complexity Low_complexity 1 21 0 190 143 36 36 chr12 62345908 62345992 -81936497 + (CGGGG)n Simple_repeat Simple_repeat 4 87 0 194 246 0 49 chr12 62346778 62346839 -81935650 - L2 LINE L2 -14 3258 3201 238 277 119 10 chr12 62347111 62347212 -81935277 - MIR SINE MIR -74 188 77 2588 138 9 41 chr12 62347382 62347847 -81934642 - L1PB4 LINE L1 -13 6143 5694 679 176 7 57 chr12 62347954 62348137 -81934352 - L1PB4 LINE L1 -1136 5010 4838 879 179 18 63 chr12 62348152 62348437 -81934052 - L1M4 LINE L1 -1523 4623 4352 182 36 0 36 chr12 62348448 62348476 -81934013 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2466 135 47 34 chr12 62348480 62348756 -81933733 - L1MC1 LINE L1 -6 6327 6041 2085 142 0 7 chr12 62348756 62349059 -81933430 + AluSx SINE Alu 1 301 -11 2466 135 47 34 chr12 62349059 62349250 -81933239 - L1MC1 LINE L1 -292 6041 5854 1694 178 17 0 chr12 62349274 62349566 -81932923 - AluJo SINE Alu -15 297 1 844 145 8 0 chr12 62349593 62349717 -81932772 - FLAM_C SINE Alu -18 125 1 940 104 7 0 chr12 62349719 62349854 -81932635 - L1MC1 LINE L1 -481 5852 5717 440 204 0 32 chr12 62350542 62350635 -81931854 + FLAM_A SINE Alu 41 130 -12 2452 57 0 7 chr12 62350637 62350936 -81931553 + AluSg1 SINE Alu 1 297 -12 363 230 288 26 chr12 62351323 62351514 -81930975 + L3 LINE CR1 1333 1573 -4 371 379 26 90 chr12 62351943 62352131 -81930358 + L1ME3A LINE L1 5705 5877 -287 1299 174 44 60 chr12 62352131 62352264 -81930225 + AluJo SINE Alu 2 136 -166 2083 118 0 33 chr12 62352264 62352569 -81929920 + AluSg SINE Alu 2 296 -14 1299 174 44 60 chr12 62352569 62352733 -81929756 + AluJo SINE Alu 136 294 -8 371 379 26 90 chr12 62352733 62352824 -81929665 + L1ME3A LINE L1 5877 5972 -192 180 217 0 0 chr12 62353990 62354036 -81928453 + GA-rich Low_complexity Low_complexity 3 48 0 363 266 71 32 chr12 62354136 62354290 -81928199 - MIR SINE MIR -22 240 81 301 207 58 33 chr12 62354429 62354550 -81927939 + L1ME3A LINE L1 6042 6165 -5 33 0 0 23 chr12 62354552 62354565 -81927924 + AT_rich Low_complexity Low_complexity 1 13 -30 2231 115 0 0 chr12 62354565 62354852 -81927637 + AluSx SINE Alu 1 287 -25 33 0 0 23 chr12 62354852 62354882 -81927607 + AT_rich Low_complexity Low_complexity 13 43 0 185 237 0 0 chr12 62354882 62354920 -81927569 - L2 LINE L2 -1318 1996 1959 540 257 81 0 chr12 62355011 62355159 -81927330 - MIR SINE MIR -101 161 2 442 273 7 7 chr12 62355362 62355501 -81926988 - MIR SINE MIR -2 260 122 1115 209 67 99 chr12 62356404 62356525 -81925964 + L1MC5 LINE L1 7395 7518 -443 1918 166 0 3 chr12 62356525 62356838 -81925651 + AluJb SINE Alu 1 312 0 1115 209 67 99 chr12 62356838 62357271 -81925218 + L1MC5 LINE L1 7518 7931 -30 442 353 54 16 chr12 62357372 62357630 -81924859 + L2 LINE L2 2592 2859 -455 226 232 73 49 chr12 62357843 62357925 -81924564 + MLT1I LTR MaLR 19 102 -307 309 290 186 62 chr12 62358418 62358804 -81923685 + L2 LINE L2 2437 2870 -444 181 305 0 34 chr12 62358808 62358867 -81923622 - L2 LINE L2 0 3272 3216 298 309 54 36 chr12 62359079 62359247 -81923242 + L2 LINE L2 3133 3303 -10 255 128 0 0 chr12 62359250 62359289 -81923200 + MIR3 SINE MIR 162 200 -8 226 108 0 77 chr12 62360063 62360128 -81922361 + (CGGG)n Simple_repeat Simple_repeat 1 60 0 2281 54 0 24 chr12 62361032 62361330 -81921159 + AluY SINE Alu 1 291 -20 404 280 33 7 chr12 62361477 62361627 -81920862 + L1M1 LINE L1 2829 2982 -4583 2305 86 0 0 chr12 62361636 62361938 -81920551 + AluY SINE Alu 1 302 -9 226 135 27 0 chr12 62363138 62363175 -81919314 - L2 LINE L2 -15 3298 3261 * 722 263 35 38 chr12 62363142 62363386 -81919103 - MIR SINE MIR -13 249 11 390 268 57 57 chr12 62363545 62363702 -81918787 - MIR SINE MIR -101 161 5 1728 149 11 0 chr12 62365191 62365495 -81916994 + AluSx SINE Alu 1 307 0 225 274 0 0 chr12 62366575 62366626 -81915863 + T-rich Low_complexity Low_complexity 5 55 0 21 36 0 0 chr12 62367840 62367868 -81914621 + GC_rich Low_complexity Low_complexity 1 28 0 285 253 98 34 chr12 62369338 62369477 -81913012 + MER5A DNA MER1_type 6 163 -26 319 309 177 36 chr12 62370279 62370635 -81911854 + L1 LINE L1 4624 5029 -1117 495 186 156 30 chr12 62370836 62371003 -81911486 + MER106A DNA MER1_type 1 188 -48 1970 124 7 0 chr12 62371005 62371296 -81911193 + AluSg1 SINE Alu 3 295 -14 1225 107 0 6 chr12 62371296 62371473 -81911016 + AluSg/x SINE Alu 134 309 -3 853 75 0 0 chr12 62371473 62371580 -81910909 + AluY SINE Alu 1 107 -204 4537 124 84 3 chr12 62371702 62372425 -81910064 + LTR1B LTR ERV1 45 826 0 2147 94 27 18 chr12 62372505 62372834 -81909655 - L1PB2 LINE L1 -2 6149 5818 384 326 29 7 chr12 62372837 62372975 -81909514 - MIR SINE MIR -102 160 20 818 237 19 66 chr12 62373763 62374020 -81908469 - MIR SINE MIR -16 246 2 1644 161 3 43 chr12 62374579 62374901 -81907588 - AluJo SINE Alu -3 309 1 981 238 104 15 chr12 62375108 62375377 -81907112 - LTR40a LTR ERVL 0 519 227 1042 203 32 20 chr12 62376544 62376790 -81905699 + MIR SINE MIR 12 260 -2 1726 164 3 10 chr12 62377052 62377351 -81905138 - AluJo SINE Alu -12 300 4 255 242 53 0 chr12 62377435 62377530 -81904959 + CT-rich Low_complexity Low_complexity 2 101 0 671 185 66 7 chr12 62377980 62378131 -81904358 + MER65C LTR ERV1 297 456 -5 436 102 80 0 chr12 62378155 62378243 -81904246 - L1MA8 LINE L1 -4 6287 6193 225 250 131 0 chr12 62378901 62378985 -81903504 - L1ME4a LINE L1 -71 6050 5956 305 283 109 29 chr12 62379099 62379237 -81903252 - L2 LINE L2 -1459 1855 1707 438 273 88 83 chr12 62379907 62380037 -81902452 - MLT1K LTR MaLR 0 588 460 1690 174 7 0 chr12 62380037 62380335 -81902154 + AluJo SINE Alu 1 300 -12 438 273 88 83 chr12 62380335 62380600 -81901889 - MLT1K LTR MaLR -128 460 191 491 342 102 17 chr12 62380783 62381166 -81901323 + L2 LINE L2 2665 3090 -182 598 109 30 30 chr12 62381179 62381280 -81901209 - AluSg/x SINE Alu -12 297 197 236 205 106 16 chr12 62381736 62381834 -81900655 + MIR SINE MIR 21 122 -86 277 240 169 5 chr12 62382345 62382549 -81899940 + L1ME LINE L1 5293 5528 -638 26 0 0 0 chr12 62382711 62382737 -81899752 + GC_rich Low_complexity Low_complexity 1 26 0 507 319 179 22 chr12 62384541 62385018 -81897471 - L2 LINE L2 -4 3309 2761 271 256 178 8 chr12 62386899 62387028 -81895461 + MIR3 SINE MIR 58 208 0 2251 56 13 16 chr12 62387045 62387351 -81895138 + AluSp SINE Alu 3 307 -6 2001 126 0 0 chr12 62387637 62387931 -81894558 + AluSq SINE Alu 6 299 -14 333 219 101 17 chr12 62389768 62389887 -81892602 - L2 LINE L2 -34 3279 3151 1820 153 19 82 chr12 62390057 62390623 -81891866 - L1ME4a LINE L1 -336 5826 5321 732 206 85 12 chr12 62390906 62391155 -81891334 - L1ME4a LINE L1 -814 5332 5087 2838 203 68 80 chr12 62391275 62391457 -81891032 + HAL1 LINE L1 1147 1330 -1177 1129 148 11 11 chr12 62391457 62391646 -81890843 - MER5A DNA MER1_type 0 189 1 2838 203 68 80 chr12 62391646 62392525 -81889964 + HAL1 LINE L1 1330 2195 -312 722 144 107 59 chr12 62392528 62392715 -81889774 - LTR7 LTR ERV1 0 450 255 2111 121 65 0 chr12 62394744 62395131 -81887358 - L1M4c LINE L1 -5050 1334 923 868 108 31 0 chr12 62395146 62395275 -81887214 - L1MA3 LINE L1 0 6305 6173 699 210 22 72 chr12 62395309 62395546 -81886943 - LTR12 LTR ERV1 -263 451 239 2760 107 156 40 chr12 62395760 62396286 -81886203 - L1MA2 LINE L1 -105 6199 5613 1907 148 104 0 chr12 62396285 62396651 -81885838 - L1M4c LINE L1 -5433 951 548 * 567 38 75 0 chr12 62398217 62398297 -81884192 + AluS SINE Alu 2 87 -226 2567 153 28 5 chr12 62398297 62398696 -81883793 - L1M4c LINE L1 -5957 427 20 29 0 0 0 chr12 62398736 62398765 -81883724 + AT_rich Low_complexity Low_complexity 1 29 0 4128 226 12 11 chr12 62398981 62400036 -81882453 - L1MEc LINE L1 -2623 3592 2537 1698 172 3 3 chr12 62401690 62401986 -81880503 - AluJo SINE Alu -16 296 1 238 341 24 12 chr12 62401998 62402080 -81880409 - L2 LINE L2 -16 3297 3215 3055 215 66 86 chr12 62402940 62404075 -81878414 - L1MEc LINE L1 -5121 1275 164 28 29 0 0 chr12 62404661 62404696 -81877793 + AT_rich Low_complexity Low_complexity 1 35 0 6035 106 21 3 chr12 62404760 62405883 -81876606 - L1PB1 LINE L1 -2 6149 5024 21 0 0 0 chr12 62406233 62406254 -81876235 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr12 62407121 62407155 -81875334 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr12 62407500 62407523 -81874966 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr12 62407751 62407777 -81874712 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr12 62408874 62408903 -81873586 + GC_rich Low_complexity Low_complexity 1 29 0 333 315 9 0 chr12 62409215 62409323 -81873166 - MIR SINE MIR -89 173 65 525 194 50 22 chr12 62409452 62409591 -81872898 - MER69 DNA AcHobo -3 2523 2381 361 148 16 0 chr12 62409740 62409801 -81872688 - MER69 DNA AcHobo -110 67 6 195 129 0 0 chr12 62410193 62410224 -81872265 + (TG)n Simple_repeat Simple_repeat 2 32 0 2474 244 88 54 chr12 62460380 62461162 -81821327 - L2 LINE L2 -1100 2214 1390 2115 113 0 0 chr12 62461162 62461472 -81821017 + AluSx SINE Alu 3 312 0 2474 244 88 54 chr12 62461472 62461682 -81820807 - L2 LINE L2 -1924 1390 1188 883 324 104 22 chr12 62461688 62462370 -81820119 - L2 LINE L2 -192 3080 2339 308 307 120 31 chr12 62462385 62462480 -81820009 - L2 LINE L2 -681 2633 2548 1713 144 0 0 chr12 62462480 62462737 -81819752 + AluSx SINE Alu 52 308 -4 308 307 120 31 chr12 62462737 62462833 -81819656 - L2 LINE L2 -766 2548 2425 2356 93 3 0 chr12 62462975 62463287 -81819202 - AluSp SINE Alu 0 313 1 478 321 30 0 chr12 62463454 62463585 -81818904 + L2 LINE L2 3137 3271 -1 2240 103 3 0 chr12 62463611 62463912 -81818577 - AluSq SINE Alu -11 302 1 1937 104 29 16 chr12 62464390 62464698 -81817791 + AluSx SINE Alu 1 312 0 23 68 0 0 chr12 62464824 62464868 -81817621 + AT_rich Low_complexity Low_complexity 1 44 0 260 70 23 0 chr12 62465861 62465904 -81816585 + (CAGCC)n Simple_repeat Simple_repeat 1 44 0 940 124 0 4 chr12 62467581 62467790 -81814699 + AluSx SINE Alu 3 290 -20 245 270 262 8 chr12 62467791 62467917 -81814572 + MIR SINE MIR 59 216 -46 1674 171 41 0 chr12 62469806 62470099 -81812390 - AluJb SINE Alu -7 305 1 773 148 16 16 chr12 62470099 62470227 -81812262 - AluJo SINE Alu -176 136 9 307 282 138 52 chr12 62475064 62475238 -81807251 + L1MCa LINE L1 1117 1305 -5121 227 306 242 11 chr12 62475298 62475484 -81807005 + MIR SINE MIR 3 231 -31 2399 74 0 0 chr12 62476574 62476885 -81805604 + AluY SINE Alu 1 311 0 783 325 154 16 chr12 62478629 62479143 -81803346 + L1ME3 LINE L1 5338 5922 -240 2015 108 4 0 chr12 62479166 62479468 -81803021 + AluSg SINE Alu 1 303 0 1086 164 0 41 chr12 62479492 62479687 -81802802 + AluJ SINE Alu 1 187 -125 697 158 0 0 chr12 62479725 62479826 -81802663 + AluJ SINE Alu 191 291 -21 344 294 64 78 chr12 62480338 62480542 -81801947 + L2 LINE L2 2879 3079 -234 848 222 50 61 chr12 62482321 62482525 -81799964 + MIR SINE MIR 5 207 -55 1866 103 31 21 chr12 62482525 62482816 -81799673 + AluSx SINE Alu 1 294 -18 848 222 50 61 chr12 62482816 62482872 -81799617 + MIR SINE MIR 207 262 0 480 254 164 21 chr12 62484935 62485124 -81797365 + MIR SINE MIR 46 261 -1 733 94 0 0 chr12 62485565 62485661 -81796828 + U6 snRNA snRNA 1 96 -11 706 236 51 36 chr12 62489754 62489949 -81792540 + MIR SINE MIR 22 219 -43 2329 62 20 3 chr12 62489985 62490289 -81792200 - AluSg SINE Alu 0 310 2 240 111 0 0 chr12 62490290 62490326 -81792163 + (T)n Simple_repeat Simple_repeat 1 36 0 316 197 0 15 chr12 62490351 62490417 -81792072 + L2 LINE L2 3248 3312 -1 35 54 0 0 chr12 62491859 62491915 -81790574 + GC_rich Low_complexity Low_complexity 1 56 0 27 87 0 0 chr12 62492007 62492076 -81790413 + GC_rich Low_complexity Low_complexity 1 69 0 26 64 0 0 chr12 62492304 62492351 -81790138 + GC_rich Low_complexity Low_complexity 1 47 0 238 267 14 34 chr12 62492565 62492685 -81789804 + G-rich Low_complexity Low_complexity 5 202 0 198 171 0 0 chr12 62494504 62494545 -81787944 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1471 185 0 4 chr12 62497226 62497486 -81785003 - AluJo SINE Alu -18 294 36 1396 165 28 20 chr12 62497598 62497797 -81784692 - AluJo SINE Alu 0 335 132 2112 117 0 0 chr12 62497797 62498087 -81784402 - AluSc SINE Alu -18 291 2 1396 165 28 20 chr12 62498087 62498194 -81784295 - AluJo SINE Alu -203 132 27 2386 93 0 0 chr12 62498799 62499110 -81783379 + AluSx SINE Alu 1 311 -1 2243 94 3 0 chr12 62499763 62500060 -81782429 + AluSx SINE Alu 1 298 -14 934 147 52 31 chr12 62503766 62503957 -81778532 + MIR SINE MIR 68 262 0 1724 100 14 21 chr12 62504138 62504417 -81778072 - AluSx SINE Alu -17 295 19 197 0 0 67 chr12 62505220 62505250 -81777239 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 243 221 179 43 chr12 62505284 62505424 -81777065 + MIR SINE MIR 103 261 -1 1094 137 0 0 chr12 62505517 62505685 -81776804 - AluSg/x SINE Alu -8 302 135 243 146 0 0 chr12 62506856 62506897 -81775592 + (CA)n Simple_repeat Simple_repeat 2 42 0 186 43 0 0 chr12 62507702 62507725 -81774764 + (TAA)n Simple_repeat Simple_repeat 2 24 0 237 346 0 24 chr12 62509668 62509795 -81772694 + C-rich Low_complexity Low_complexity 2 125 0 271 209 34 74 chr12 62509869 62510017 -81772472 + G-rich Low_complexity Low_complexity 2 143 0 208 224 0 17 chr12 62510168 62510226 -81772263 + (CCG)n Simple_repeat Simple_repeat 2 58 0 204 40 0 0 chr12 62510799 62510824 -81771665 + (CCG)n Simple_repeat Simple_repeat 1 25 0 183 184 0 0 chr12 62513033 62513071 -81769418 + CT-rich Low_complexity Low_complexity 2 39 0 198 91 0 0 chr12 62513315 62513348 -81769141 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr12 62515126 62515155 -81767334 + (CA)n Simple_repeat Simple_repeat 2 30 0 201 269 185 46 chr12 62516053 62516161 -81766328 + MIR3 SINE MIR 2 124 -84 187 309 298 0 chr12 62517095 62517189 -81765300 - L2 LINE L2 -9 3263 3142 871 162 203 10 chr12 62517994 62518191 -81764298 + MIR SINE MIR 4 238 -24 653 247 52 6 chr12 62518253 62518417 -81764072 - MIR SINE MIR -61 147 17 2476 67 0 52 chr12 62519135 62519463 -81763026 - AluY SINE Alu 0 311 1 387 306 0 7 chr12 62519804 62519951 -81762538 + CT-rich Low_complexity Low_complexity 2 147 0 217 193 34 57 chr12 62522566 62522654 -81759835 + G-rich Low_complexity Low_complexity 1 86 0 275 224 66 13 chr12 62523469 62523545 -81758944 + MIR SINE MIR 15 94 -168 522 275 42 24 chr12 62525172 62525339 -81757150 - MIR SINE MIR -4 258 89 687 83 21 0 chr12 62525628 62525724 -81756765 - AluSg/x SINE Alu -4 308 211 347 277 62 31 chr12 62525901 62526031 -81756458 + L1ME LINE L1 5685 5818 -303 2305 123 0 0 chr12 62526039 62526347 -81756142 + AluSg SINE Alu 1 308 -2 246 280 13 0 chr12 62526356 62526431 -81756058 + L1MC4a LINE L1 3777 3852 -2294 363 291 179 0 chr12 62526449 62526583 -81755906 + L1MC/D LINE L1 2464 2621 -3525 325 190 173 72 chr12 62526691 62526928 -81755561 + L1MC/D LINE L1 2789 3049 -3097 908 267 66 70 chr12 62526950 62527549 -81754940 + L1MC4a LINE L1 5221 5293 -853 1808 172 21 0 chr12 62527549 62527840 -81754649 - AluJo SINE Alu -15 297 1 908 267 66 70 chr12 62527840 62527890 -81754599 + L1MC4a LINE L1 5293 5342 -804 1680 168 3 30 chr12 62528079 62528382 -81754107 - AluJo SINE Alu -17 295 1 324 175 16 32 chr12 62528416 62528479 -81754010 + L1MC/D LINE L1 3080 3141 -3005 1221 98 0 0 chr12 62528491 62528644 -81753845 + AluSp SINE Alu 1 153 -160 1540 151 81 0 chr12 62528648 62528932 -81753557 + MSTA LTR MaLR 122 428 0 1303 294 106 52 chr12 62528953 62529326 -81753163 + L1MC/D LINE L1 3171 3522 -2624 1589 168 42 36 chr12 62529326 62529635 -81752854 - AluJb SINE Alu -1 311 1 1303 294 106 52 chr12 62529635 62530381 -81752108 + L1MC/D LINE L1 3522 4226 -1920 1809 153 40 3 chr12 62530381 62530681 -81751808 + AluSx SINE Alu 1 311 -1 1303 294 106 52 chr12 62530681 62531564 -81750925 + L1MC/D LINE L1 4226 5282 -864 * 2051 207 29 41 chr12 62531563 62531656 -81750833 + L1MB4 LINE L1 3623 3716 -2430 2310 109 0 0 chr12 62531656 62531949 -81750540 - AluSx SINE Alu -18 294 2 2051 207 29 41 chr12 62531949 62532415 -81750074 + L1MB4 LINE L1 3716 4175 -1971 1816 172 18 53 chr12 62532412 62532806 -81749683 + L1MB4 LINE L1 4606 4983 -1163 * 720 203 8 8 chr12 62532806 62532934 -81749555 + FLAM_A SINE Alu 1 128 -5 1816 172 18 53 chr12 62532934 62532993 -81749496 + L1MB4 LINE L1 4983 5043 -1103 962 96 0 0 chr12 62533029 62533154 -81749335 + AluSp/q SINE Alu 181 305 -8 4300 140 68 26 chr12 62533154 62534104 -81748385 + L1MB4 LINE L1 5190 6180 0 2267 92 7 0 chr12 62534110 62534421 -81748068 + AluSq SINE Alu 1 313 0 374 246 149 18 chr12 62534437 62534608 -81747881 + L1MC/D LINE L1 5600 5791 -396 2482 96 0 3 chr12 62534629 62534942 -81747547 + AluSx SINE Alu 1 312 0 2423 88 10 0 chr12 62536085 62536391 -81746098 - AluSx SINE Alu -2 310 2 1094 325 136 34 chr12 62536591 62537817 -81744672 + L2 LINE L2 1880 3255 -17 609 261 78 6 chr12 62538018 62538198 -81744291 - L2 LINE L2 -1 3312 3120 621 106 0 0 chr12 62538239 62538343 -81744146 + (TG)n Simple_repeat Simple_repeat 2 105 0 515 369 128 8 chr12 62539145 62539535 -81742954 - L2 LINE L2 -680 2634 2198 362 238 223 17 chr12 62540161 62540296 -81742193 - MIR SINE MIR -60 148 31 2410 110 0 0 chr12 62540299 62540600 -81741889 - AluSq SINE Alu -12 301 1 191 254 56 28 chr12 62541078 62541149 -81741340 - MER5C DNA MER1_type -27 297 225 2383 99 0 0 chr12 62541150 62541453 -81741036 + AluSx SINE Alu 1 303 -9 282 364 55 18 chr12 62541899 62542009 -81740480 + MER5B DNA MER1_type 65 178 0 209 200 22 0 chr12 62542335 62542380 -81740109 + L2 LINE L2 3254 3299 -14 906 270 180 37 chr12 62542393 62543114 -81739375 + L2 LINE L2 2437 3271 -1 2387 107 0 0 chr12 62543143 62543453 -81739036 + AluSg SINE Alu 1 310 0 25 51 0 0 chr12 62544911 62544950 -81737539 + AT_rich Low_complexity Low_complexity 1 39 0 211 124 0 47 chr12 62545667 62545710 -81736779 - L2 LINE L2 -16 3297 3216 2198 115 26 3 chr12 62545720 62546025 -81736464 + AluSx SINE Alu 1 312 0 494 191 62 183 chr12 62546063 62546236 -81736253 + MIR SINE MIR 51 243 -19 2306 95 3 3 chr12 62546236 62546530 -81735959 + AluSp SINE Alu 1 294 -19 258 32 0 0 chr12 62546532 62546563 -81735926 + (TA)n Simple_repeat Simple_repeat 1 31 0 494 191 62 183 chr12 62546563 62546577 -81735912 + MIR SINE MIR 244 210 -52 2530 70 0 0 chr12 62546577 62546879 -81735610 + AluY SINE Alu 1 302 -9 494 191 62 183 chr12 62546879 62546928 -81735561 + MIR SINE MIR 209 262 0 299 259 121 52 chr12 62546933 62547049 -81735440 - MIR SINE MIR -136 126 3 405 313 69 23 chr12 62547891 62548108 -81734381 + Charlie8 DNA MER1_type 38 264 -2153 2439 56 17 0 chr12 62548114 62548402 -81734087 + AluY SINE Alu 1 293 -18 712 207 0 9 chr12 62551007 62551123 -81731366 + AluSg/x SINE Alu 138 252 -60 475 230 40 102 chr12 62551141 62551271 -81731218 + L1MC4 LINE L1 7772 7908 -134 2173 81 20 13 chr12 62551271 62551569 -81730920 + AluSx SINE Alu 1 300 -12 475 230 40 102 chr12 62551569 62551602 -81730887 + L1MC4 LINE L1 7908 7941 -101 1677 197 10 0 chr12 62551602 62551897 -81730592 + AluJo SINE Alu 1 298 -14 475 230 40 102 chr12 62551897 62551958 -81730531 + L1MC4 LINE L1 7941 7983 -59 2312 110 10 0 chr12 62551958 62552267 -81730222 + AluSx SINE Alu 1 312 0 2113 92 50 0 chr12 62552606 62552888 -81729601 - AluSp SINE Alu -17 296 1 180 97 0 0 chr12 62552989 62553020 -81729469 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 490 311 149 19 chr12 62553023 62553344 -81729145 - L2 LINE L2 -13 3300 2938 208 215 123 62 chr12 62554527 62554592 -81727897 - MIR SINE MIR -34 228 160 1762 172 6 9 chr12 62554614 62554934 -81727555 + Tigger3(Golem) DNA MER2_type 1 319 -2710 902 83 61 30 chr12 62554942 62555074 -81727415 + AluSg/x SINE Alu 166 301 -8 1199 128 0 0 chr12 62555075 62555254 -81727235 + Tigger3b DNA MER2_type 342 520 -711 2183 75 0 69 chr12 62555385 62555704 -81726785 + AluSx SINE Alu 1 297 -15 335 238 89 50 chr12 62556916 62557017 -81725472 - L2 LINE L2 0 3313 3209 2177 125 3 3 chr12 62557948 62558251 -81724238 + AluJb SINE Alu 7 309 -3 474 254 177 19 chr12 62559357 62559566 -81722923 - L2 LINE L2 -203 3069 2828 212 254 133 26 chr12 62559702 62559779 -81722710 - L2 LINE L2 -52 3261 3136 556 267 90 56 chr12 62559842 62560108 -81722381 - L2 LINE L2 0 3313 3039 1639 97 0 9 chr12 62560220 62560437 -81722052 + AluSq SINE Alu 82 296 -17 1648 219 22 61 chr12 62560451 62560694 -81721795 - L2 LINE L2 -606 2708 2490 1948 125 3 54 chr12 62560694 62561007 -81721482 + AluJo SINE Alu 1 297 -15 1648 219 22 61 chr12 62561007 62561219 -81721270 - L2 LINE L2 -824 2490 2271 2351 90 0 3 chr12 62561262 62561562 -81720927 - AluSq SINE Alu -11 302 4 243 0 0 0 chr12 62561565 62561592 -81720897 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1899 120 0 34 chr12 62561597 62561889 -81720600 - AluJb SINE Alu -30 282 1 1556 188 0 4 chr12 62561917 62562188 -81720301 + AluJo SINE Alu 37 306 -6 2322 87 0 7 chr12 62562226 62562524 -81719965 + AluY SINE Alu 1 296 -15 518 153 12 0 chr12 62562625 62562710 -81719779 - MER4A LTR ERV1 0 664 579 2335 110 3 0 chr12 62562923 62563232 -81719257 + AluSx SINE Alu 3 312 0 575 254 108 53 chr12 62563236 62563502 -81718987 - L1MC4a LINE L1 -1717 6091 5792 2464 82 0 3 chr12 62563502 62563808 -81718681 - AluSc SINE Alu -4 305 1 575 254 108 53 chr12 62563808 62563958 -81718531 - L1MC4a LINE L1 -2016 5792 5652 800 156 0 15 chr12 62563970 62564105 -81718384 + FLAM_C SINE Alu 1 133 0 1307 225 25 35 chr12 62564254 62564685 -81717804 - L1M4 LINE L1 -2970 3987 3561 * 5909 193 59 48 chr12 62564660 62566006 -81716483 - L1M4 LINE L1 -5330 1529 169 1509 176 79 11 chr12 62566006 62566295 -81716194 + AluJo SINE Alu 1 307 0 529 227 165 41 chr12 62566492 62566734 -81715755 + L1MC4a LINE L1 5898 6169 -1639 2452 93 0 0 chr12 62566747 62567048 -81715441 + AluSq SINE Alu 1 301 -12 779 155 31 8 chr12 62567052 62567181 -81715308 + AluSq/x SINE Alu 2 133 -179 306 139 0 0 chr12 62567205 62567248 -81715241 - Alu SINE Alu -258 43 1 468 234 110 39 chr12 62567281 62567563 -81714926 + L1MC4a LINE L1 6162 6463 -1345 934 214 71 84 chr12 62567626 62567689 -81714800 + L1MC4 LINE L1 6694 6756 -1286 2361 95 0 19 chr12 62567689 62568004 -81714485 + AluSg SINE Alu 1 309 -1 934 214 71 84 chr12 62568004 62568263 -81714226 + L1MC4 LINE L1 6756 7012 -1030 331 203 0 0 chr12 62568382 62568441 -81714048 - FRAM/FAM SINE Alu -90 76 18 1978 151 3 7 chr12 62568503 62568795 -81713694 + AluJb SINE Alu 1 291 -21 2253 96 0 0 chr12 62568799 62569080 -81713409 + AluSc SINE Alu 3 283 -26 3359 177 61 11 chr12 62569086 62569787 -81712702 + Charlie1 DNA MER1_type 1535 2270 -491 1086 161 29 95 chr12 62569795 62570078 -81712411 + AluJo SINE Alu 86 352 0 693 157 9 0 chr12 62570134 62570249 -81712240 - FLAM_A SINE Alu -6 136 21 24 0 0 0 chr12 62570698 62570722 -81711767 + GC_rich Low_complexity Low_complexity 1 24 0 421 183 15 131 chr12 62571006 62571096 -81711393 - HAL1 LINE L1 -900 1607 1537 1880 141 0 24 chr12 62571096 62571394 -81711095 - AluJo SINE Alu -17 295 5 421 183 15 131 chr12 62571394 62571440 -81711049 - HAL1 LINE L1 -970 1537 1487 6918 93 13 13 chr12 62571467 62572473 -81710016 - L1MA2 LINE L1 0 6304 5299 834 210 97 36 chr12 62572595 62572904 -81709585 + HAL1 LINE L1 1180 1507 -1000 2880 125 4 7 chr12 62572973 62573429 -81709060 + L1 LINE L1 4559 5013 -1133 2312 81 0 3 chr12 62573431 62573715 -81708774 + AluY SINE Alu 1 283 -28 809 156 9 99 chr12 62573726 62573817 -81708672 + L1M4b LINE L1 89 152 -6707 1629 159 76 11 chr12 62573817 62574094 -81708395 - AluJo SINE Alu -17 295 1 809 156 9 99 chr12 62574094 62574214 -81708275 + L1M4b LINE L1 152 281 -6578 667 136 10 0 chr12 62574548 62574651 -81707838 - AluSq/x SINE Alu -203 109 6 2148 128 6 3 chr12 62574660 62574972 -81707517 - AluSq SINE Alu 0 313 1 232 184 20 0 chr12 62574988 62575037 -81707452 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 1685 172 7 14 chr12 62575167 62575452 -81707037 + AluJo SINE Alu 11 293 -19 337 194 75 0 chr12 62575466 62575533 -81706956 + L1M4b LINE L1 11 82 -6777 2220 94 0 10 chr12 62576897 62577195 -81705294 - AluY SINE Alu -16 295 1 2394 90 3 0 chr12 62577195 62577495 -81704994 - AluSg SINE Alu -8 302 1 1064 143 24 6 chr12 62577601 62577769 -81704720 + AluSg/x SINE Alu 130 300 -12 294 295 0 0 chr12 62580412 62580490 -81701999 - L2 LINE L2 -7 3265 3188 2096 105 14 7 chr12 62580995 62581280 -81701209 - AluSq SINE Alu -26 287 1 247 241 0 0 chr12 62581603 62581661 -81700828 + CT-rich Low_complexity Low_complexity 3 60 0 2515 90 0 0 chr12 62582078 62582390 -81700099 - AluSx SINE Alu 0 312 1 704 218 0 0 chr12 62582391 62582515 -81699974 - FLAM_A SINE Alu -6 127 4 363 244 219 0 chr12 62582809 62582973 -81699516 - MIR SINE MIR 0 262 63 376 326 50 60 chr12 62584213 62584431 -81698058 - MIR SINE MIR -14 248 33 2191 93 4 4 chr12 62584513 62584815 -81697674 - AluSx SINE Alu 0 307 6 2532 83 3 0 chr12 62584824 62585136 -81697353 - AluSq SINE Alu 0 313 1 478 202 58 19 chr12 62585137 62585241 -81697248 + LTR19C LTR ERV1 672 779 0 2189 113 0 7 chr12 62585261 62585553 -81696936 - AluSc SINE Alu -19 290 1 712 82 8 74 chr12 62585573 62585695 -81696794 + PABL_A-int LTR ERV1 499 612 -4403 2338 99 0 3 chr12 62585697 62585999 -81696490 - AluSq SINE Alu -12 301 1 4124 79 46 20 chr12 62585999 62586647 -81695842 + PABL_A-int LTR ERV1 1831 2495 -4103 1051 142 126 85 chr12 62586647 62586894 -81695595 - LTR8 LTR ERV1 -434 257 1 1211 68 22 45 chr12 62586894 62586948 -81695541 + MER4-int LTR ERV1 2737 2791 -3807 2109 141 0 13 chr12 62586948 62587254 -81695235 + AluSx SINE Alu 1 302 -10 1211 68 22 45 chr12 62587254 62587421 -81695068 + MER4-int LTR ERV1 2791 2953 -3645 256 301 219 0 chr12 62587548 62587671 -81694818 - L2 LINE L2 -301 3012 2863 1361 169 94 3 chr12 62587672 62587991 -81694498 + L2 LINE L2 2238 2585 -729 437 243 0 19 chr12 62588148 62588255 -81694234 - MER63 DNA MER1_type -105 731 1 314 26 0 0 chr12 62588498 62588536 -81693953 - AluY SINE Alu -270 38 1 2451 92 0 0 chr12 62588551 62588856 -81693633 - AluSx SINE Alu -7 305 1 606 279 45 20 chr12 62589930 62590177 -81692312 - L2 LINE L2 -15 3298 3046 697 157 0 0 chr12 62591804 62591919 -81690570 + FLAM_A SINE Alu 1 115 -18 471 35 0 0 chr12 62591926 62591983 -81690506 + (CATA)n Simple_repeat Simple_repeat 3 59 0 416 221 0 0 chr12 62592028 62592114 -81690375 + HAL1 LINE L1 120 205 -2302 1575 241 86 64 chr12 62592157 62592479 -81690010 + HAL1 LINE L1 648 962 -1545 2099 127 0 0 chr12 62592479 62592771 -81689718 + AluSx SINE Alu 1 292 -20 1575 241 86 64 chr12 62592771 62593290 -81689199 + HAL1 LINE L1 962 1507 -1000 7425 108 12 18 chr12 62593359 62593817 -81688672 + L1MA2 LINE L1 4559 5018 -1286 2616 65 0 0 chr12 62593817 62594124 -81688365 + AluY SINE Alu 1 307 -4 7425 108 12 18 chr12 62594124 62595426 -81687063 + L1MA2 LINE L1 5018 6304 0 1880 141 0 24 chr12 62595499 62595797 -81686692 + AluJo SINE Alu 5 295 -17 387 214 22 0 chr12 62595798 62595887 -81686602 + HAL1 LINE L1 1517 1607 -900 466 200 9 0 chr12 62595891 62596001 -81686488 - L1MA4A LINE L1 -4 6299 6189 5116 147 16 13 chr12 62596001 62597205 -81685284 - L1PB4 LINE L1 -98 6058 4859 1377 139 0 24 chr12 62597205 62597414 -81685075 - AluJo SINE Alu -24 288 85 3842 162 19 39 chr12 62597414 62597450 -81685039 - L1PB4 LINE L1 -1258 4888 4853 1819 163 3 23 chr12 62597450 62597751 -81684738 + AluJb SINE Alu 1 295 -17 3842 162 19 39 chr12 62597751 62598391 -81684098 - L1PB4 LINE L1 -1293 4853 4228 2295 97 3 3 chr12 62598391 62598690 -81683799 + AluSp SINE Alu 2 300 -13 3842 162 19 39 chr12 62598690 62598807 -81683682 - L1PB4 LINE L1 -1918 4228 4110 1092 278 66 51 chr12 62598796 62599282 -81683207 + HAL1 LINE L1 1589 2081 -426 * 319 287 44 33 chr12 62599287 62599468 -81683021 + L1MEd LINE L1 87 269 -5936 180 0 0 0 chr12 62599905 62599925 -81682564 + (CA)n Simple_repeat Simple_repeat 1 20 0 382 215 43 86 chr12 62599934 62600097 -81682392 + L1MEd LINE L1 818 973 -5232 21 57 0 0 chr12 62600097 62600132 -81682357 + AT_rich Low_complexity Low_complexity 1 35 0 365 195 0 0 chr12 62600178 62600255 -81682234 - L1 LINE L1 -1854 4292 4216 * 5737 144 27 23 chr12 62600253 62602050 -81680439 + L1PB2 LINE L1 4332 6150 -1 2146 100 0 47 chr12 62602060 62602361 -81680128 + AluSq SINE Alu 4 290 -23 202 211 0 0 chr12 62602367 62602419 -81680070 + A-rich Low_complexity Low_complexity 1 52 0 317 289 78 0 chr12 62602427 62602555 -81679934 + L1MC5 LINE L1 7085 7222 -739 784 196 154 45 chr12 62602683 62602733 -81679756 + L1MC5 LINE L1 7260 7303 -658 1858 168 0 0 chr12 62602733 62603031 -81679458 - AluSx SINE Alu -14 298 1 784 196 154 45 chr12 62603031 62603338 -81679151 + L1MC5 LINE L1 7303 7656 -305 501 138 100 0 chr12 62603338 62603418 -81679071 + AluSq SINE Alu 2 89 -224 * 510 114 0 0 chr12 62603416 62603486 -81679003 + AluSp/q SINE Alu 181 250 -63 1081 130 12 110 chr12 62603486 62603732 -81678757 + AluSx SINE Alu 83 304 -6 790 199 64 45 chr12 62603733 62603999 -81678490 + L1MC5 LINE L1 7654 7924 -37 552 283 95 29 chr12 62604016 62604160 -81678329 + L1MEd LINE L1 1053 1186 -5143 2281 97 23 0 chr12 62604160 62604459 -81678030 + AluSc SINE Alu 1 306 -3 552 283 95 29 chr12 62604459 62604672 -81677817 + L1MEd LINE L1 1186 1467 -4862 370 238 0 12 chr12 62604677 62604761 -81677728 + L1ME2 LINE L1 6068 6150 -14 * 404 271 57 24 chr12 62604758 62604957 -81677532 + L1MEd LINE L1 1432 1640 -4756 798 131 15 0 chr12 62604957 62605087 -81677402 + FLAM_C SINE Alu 2 133 0 426 168 137 11 chr12 62605237 62605332 -81677157 + LTR50 LTR ERVL 1 107 -688 6076 131 9 21 chr12 62605334 62606310 -81676179 - L1MC1 LINE L1 0 6333 5370 2065 122 37 7 chr12 62606311 62606607 -81675882 - AluSx SINE Alu -7 305 1 1055 131 48 146 chr12 62606608 62606876 -81675613 + MLT2B1 LTR ERVL 279 520 0 340 176 14 0 chr12 62606876 62606950 -81675539 - L1MC1 LINE L1 -848 5298 5224 567 181 0 0 chr12 62606950 62607066 -81675423 + (TA)n Simple_repeat Simple_repeat 2 117 0 1431 161 34 21 chr12 62607066 62607206 -81675283 - AluJo SINE Alu -39 273 126 2178 86 11 4 chr12 62607206 62607532 -81674957 - AluSg SINE Alu 0 328 1 1431 161 34 21 chr12 62607532 62607626 -81674863 - AluJo SINE Alu -186 126 35 3904 209 43 26 chr12 62607626 62608650 -81673839 - L1MC1 LINE L1 -915 5231 4191 790 258 138 9 chr12 62608650 62609137 -81673352 + LTR50 LTR ERVL 94 795 0 2481 66 3 3 chr12 62609322 62609627 -81672862 + AluY SINE Alu 1 305 -6 3061 208 48 43 chr12 62610773 62611663 -81670826 + L1M4 LINE L1 3561 4455 -1691 745 96 0 26 chr12 62611666 62611781 -81670708 + AluSq/x SINE Alu 2 113 -199 864 129 30 28 chr12 62611884 62612085 -81670404 - MER4A LTR ERV1 -144 520 261 2688 108 66 5 chr12 62612112 62612521 -81669968 - MER57B LTR ERV1 0 434 1 1570 81 123 0 chr12 62612521 62612756 -81669733 - MER57B-int LTR ERV1 0 7537 7274 539 176 59 8 chr12 62612756 62612875 -81669614 - LTR54B LTR ERV1 -369 129 5 11678 96 36 38 chr12 62612875 62613089 -81669400 - MER57B-int LTR ERV1 -387 7150 6937 6983 68 6 280 chr12 62613089 62614995 -81667494 - SVA Other Other 0 1386 3 11678 96 36 38 chr12 62614995 62616627 -81665862 - MER57B-int LTR ERV1 -600 6937 5307 5587 183 61 29 chr12 62616630 62616747 -81665742 - MER57B-int LTR ERV1 -1706 3309 3197 1627 138 71 32 chr12 62616747 62617030 -81665459 + AluSq SINE Alu 1 294 -19 5587 183 61 29 chr12 62617030 62618793 -81663696 - MER57B-int LTR ERV1 -1818 3197 1492 2100 117 14 0 chr12 62618793 62619075 -81663414 - AluSc SINE Alu -23 286 1 5587 183 61 29 chr12 62619075 62619736 -81662753 - MER57B-int LTR ERV1 -3523 1492 1672 2198 113 27 0 chr12 62619736 62620028 -81662461 + AluSg SINE Alu 1 300 -10 5587 183 61 29 chr12 62620028 62620157 -81662332 - MER57B-int LTR ERV1 -3342 1673 1550 2783 142 111 33 chr12 62620130 62620367 -81662122 - MER57B-int LTR ERV1 -5074 872 655 * 186 43 0 0 chr12 62620367 62620390 -81662099 + (GA)n Simple_repeat Simple_repeat 1 23 0 2783 142 111 33 chr12 62620390 62620695 -81661794 - MER57B-int LTR ERV1 -5291 655 288 2189 106 6 39 chr12 62620697 62621009 -81661480 - AluSc SINE Alu -7 302 1 4262 134 26 1 chr12 62621011 62621667 -81660822 - MER57B-int LTR ERV1 -6865 672 1 2914 121 12 5 chr12 62621667 62622098 -81660391 - MER57B LTR ERV1 0 434 1 328 123 55 41 chr12 62622100 62622173 -81660316 - MER4A LTR ERV1 -589 75 2 749 136 0 30 chr12 62622175 62622307 -81660182 - MER4A-int LTR ERV1 0 6598 6471 4414 139 165 109 chr12 62622311 62623845 -81658644 - pTR5 LTR ERV1 -1 2437 743 15034 100 46 26 chr12 62623845 62624275 -81658214 - MER4A-int LTR ERV1 -124 6474 6054 2492 93 0 0 chr12 62624275 62624585 -81657904 - AluY SINE Alu -1 310 1 15034 100 46 26 chr12 62624585 62625882 -81656607 - MER4A-int LTR ERV1 -544 6054 4679 2057 139 0 7 chr12 62625882 62626176 -81656313 - AluSx SINE Alu -20 292 1 15034 100 46 26 chr12 62626176 62626940 -81655549 - MER4A-int LTR ERV1 -1919 4679 3932 41493 33 23 1 chr12 62626941 62632960 -81649529 - L1PA2 LINE L1 -1 6154 2 986 215 34 44 chr12 62632966 62633019 -81649470 - MER4B-int LTR ERV1 -495 4385 4333 2229 110 17 0 chr12 62633019 62633318 -81649171 + AluSp SINE Alu 1 304 -9 986 215 34 44 chr12 62633318 62633730 -81648759 - MER4B-int LTR ERV1 -547 4333 1828 734 302 214 22 chr12 62633938 62634630 -81647859 + L2 LINE L2 1798 2622 -692 1745 73 0 34 chr12 62634666 62634900 -81647589 - AluSx SINE Alu -14 298 73 4024 178 42 54 chr12 62634900 62635865 -81646624 - LTR13 LTR ERVK 0 954 1 554 117 0 0 chr12 62635865 62635942 -81646547 - AluSx SINE Alu -234 78 2 1449 137 9 0 chr12 62635942 62636161 -81646328 - AluSg/x SINE Alu -7 303 83 1919 51 4 47 chr12 62636200 62636454 -81646035 - AluSx SINE Alu -69 243 1 398 292 74 85 chr12 62636456 62636819 -81645670 + L2 LINE L2 2914 3272 0 204 194 0 0 chr12 62637157 62637193 -81645296 + (CCCCG)n Simple_repeat Simple_repeat 5 40 0 250 224 104 0 chr12 62638960 62639027 -81643462 + L3b LINE CR1 1293 1366 -217 296 300 46 46 chr12 62639075 62639205 -81643284 - L2 LINE L2 0 3272 3143 279 0 0 0 chr12 62639703 62639734 -81642755 + (T)n Simple_repeat Simple_repeat 1 31 0 544 230 52 103 chr12 62640596 62640714 -81641775 + MIR SINE MIR 58 162 -100 2213 107 6 22 chr12 62640714 62641031 -81641458 + AluSx SINE Alu 1 312 0 544 230 52 103 chr12 62641031 62641125 -81641364 + MIR SINE MIR 162 259 -3 2321 106 7 0 chr12 62641449 62641750 -81640739 + AluSx SINE Alu 1 303 -9 2352 106 3 0 chr12 62642230 62642541 -81639948 + AluSp SINE Alu 1 312 -1 988 302 143 59 chr12 62642673 62644090 -81638399 - L2 LINE L2 -5 3267 1723 857 129 0 0 chr12 62644108 62644224 -81638265 - FLAM_A SINE Alu -14 128 13 2237 108 3 13 chr12 62644265 62644571 -81637918 + AluSx SINE Alu 1 303 -9 1951 132 43 16 chr12 62645801 62646105 -81636384 + AluJo SINE Alu 1 312 0 23 0 0 0 chr12 62649464 62649487 -81633002 + AT_rich Low_complexity Low_complexity 1 23 0 239 290 0 0 chr12 62650902 62650995 -81631494 + C-rich Low_complexity Low_complexity 1 93 0 222 265 0 0 chr12 62653302 62653351 -81629138 + C-rich Low_complexity Low_complexity 6 54 0 362 342 117 29 chr12 62654104 62654411 -81628078 + L3b LINE CR1 1120 1453 -130 23 33 0 0 chr12 62655793 62655823 -81626666 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr12 62657681 62657713 -81624776 + GC_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr12 62657839 62657870 -81624619 + GC_rich Low_complexity Low_complexity 1 31 0 32 26 0 0 chr12 62657885 62657924 -81624565 + GC_rich Low_complexity Low_complexity 1 39 0 186 275 0 0 chr12 62658148 62658188 -81624301 + L3 LINE CR1 1529 1568 -9 707 173 24 0 chr12 62663514 62663641 -81618848 - FLAM_C SINE Alu -3 130 1 2252 119 6 3 chr12 62664557 62664868 -81617621 - AluSx SINE Alu 0 312 1 209 197 21 18 chr12 62673109 62673173 -81609316 + MIR SINE MIR 87 140 -68 621 38 0 0 chr12 62673350 62673429 -81609060 + L1PA5 LINE L1 6069 6147 -7 26 0 0 0 chr12 62673429 62673455 -81609034 + AT_rich Low_complexity Low_complexity 1 26 0 267 255 216 10 chr12 62674506 62674608 -81607881 - L2 LINE L2 0 3313 3191 396 193 129 57 chr12 62675230 62675370 -81607119 - L2 LINE L2 -5 3308 3159 * 593 262 105 9 chr12 62675364 62675574 -81606915 - MIR SINE MIR 0 262 33 489 263 12 62 chr12 62675646 62675806 -81606683 - L2 LINE L2 -275 3038 2887 209 182 0 55 chr12 62678170 62678225 -81604264 + GA-rich Low_complexity Low_complexity 2 53 0 25 31 0 0 chr12 62678518 62678550 -81603939 + GC_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr12 62679845 62679865 -81602624 + (TG)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr12 62679961 62679983 -81602506 + AT_rich Low_complexity Low_complexity 1 22 0 1755 154 40 33 chr12 62680019 62680318 -81602171 + AluJb SINE Alu 3 303 -9 1222 135 0 55 chr12 62680321 62680521 -81601968 + AluSg/x SINE Alu 124 312 0 681 137 51 0 chr12 62680521 62680638 -81601851 + L1MC4 LINE L1 7544 7666 -376 739 195 0 0 chr12 62680682 62680805 -81601684 + AluJo SINE Alu 2 124 -188 719 174 0 0 chr12 62680815 62680936 -81601553 - FLAM_C SINE Alu -12 131 11 1107 147 0 58 chr12 62680944 62681134 -81601355 + AluJo SINE Alu 116 294 -18 497 211 72 13 chr12 62681183 62681335 -81601154 + L1MC4 LINE L1 7744 7904 -138 37 69 0 0 chr12 62681379 62681451 -81601038 + AT_rich Low_complexity Low_complexity 1 72 0 393 234 62 0 chr12 62681455 62681583 -81600906 + L1MC4 LINE L1 7907 8042 0 2340 99 3 0 chr12 62681633 62681935 -81600554 + AluSq SINE Alu 1 303 -10 685 187 84 6 chr12 62682184 62682350 -81600139 - AluJb SINE Alu -17 295 117 886 222 20 5 chr12 62682504 62682702 -81599787 - MER2 DNA MER2_type -141 204 4 550 270 48 8 chr12 62682983 62683159 -81599330 + MER20B DNA MER1_type 14 198 -21 2215 112 0 3 chr12 62683284 62683571 -81598918 - AluSx SINE Alu -24 288 3 2488 58 0 3 chr12 62683973 62684268 -81598221 + AluY SINE Alu 1 294 -17 180 0 0 0 chr12 62684691 62684711 -81597778 + (TG)n Simple_repeat Simple_repeat 1 20 0 437 284 133 59 chr12 62684767 62684865 -81597624 + L1M4 LINE L1 4951 5040 -1106 1676 159 41 38 chr12 62684865 62685155 -81597334 + AluJb SINE Alu 3 293 -19 437 284 133 59 chr12 62685155 62685327 -81597162 + L1M4 LINE L1 5040 5241 -905 1490 230 77 53 chr12 62685372 62685435 -81597054 + L1MC4 LINE L1 7014 7074 -968 207 0 0 0 chr12 62685435 62685458 -81597031 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1490 230 77 53 chr12 62685458 62685540 -81596949 + L1MC4 LINE L1 7074 7153 -889 1227 57 0 0 chr12 62685540 62685699 -81596790 - L1PA3 LINE L1 0 6155 5997 1490 230 77 53 chr12 62685699 62686061 -81596428 + L1MC4 LINE L1 7153 7534 -508 2240 110 3 23 chr12 62686079 62686388 -81596101 + AluSx SINE Alu 1 303 -9 1249 126 0 55 chr12 62686391 62686590 -81595899 + AluSg/x SINE Alu 124 311 -1 592 167 50 8 chr12 62686592 62686712 -81595777 + L1MC4 LINE L1 7542 7666 -376 739 195 0 0 chr12 62686755 62686878 -81595611 + AluJo SINE Alu 2 124 -188 726 163 24 0 chr12 62686886 62687009 -81595480 - AluJo SINE Alu -176 136 11 1101 147 0 63 chr12 62687017 62687208 -81595281 + AluJo SINE Alu 116 294 -18 497 211 72 13 chr12 62687257 62687409 -81595080 + L1MC4 LINE L1 7744 7904 -138 34 72 0 0 chr12 62687453 62687522 -81594967 + AT_rich Low_complexity Low_complexity 1 69 0 393 234 62 0 chr12 62687526 62687654 -81594835 + L1MC4 LINE L1 7907 8042 0 2340 99 3 0 chr12 62687704 62688006 -81594483 + AluSq SINE Alu 1 303 -10 685 187 84 6 chr12 62688255 62688421 -81594068 - AluJb SINE Alu -17 295 117 886 222 20 5 chr12 62688575 62688773 -81593716 - MER2 DNA MER2_type -141 204 4 550 270 48 8 chr12 62689054 62689230 -81593259 + MER20B DNA MER1_type 14 198 -21 2215 112 0 3 chr12 62689355 62689642 -81592847 - AluSx SINE Alu -24 288 3 2315 61 41 7 chr12 62690042 62690336 -81592153 + AluY SINE Alu 1 304 -7 388 305 58 32 chr12 62690823 62690977 -81591512 - L1MC4a LINE L1 -1874 5934 5777 597 130 0 20 chr12 62691553 62691653 -81590836 + MER4A LTR ERV1 1 98 -566 1816 134 9 25 chr12 62691653 62692004 -81590485 + MER4A LTR ERV1 261 664 0 2772 125 126 75 chr12 62692007 62692942 -81589547 + MER4A-int LTR ERV1 1 887 -5711 1799 208 24 109 chr12 62692942 62693283 -81589206 + LTR9 LTR ERV1 1 369 -243 1639 166 52 7 chr12 62693283 62693573 -81588916 + AluJb SINE Alu 1 303 -9 1799 208 24 109 chr12 62693573 62693787 -81588702 + LTR9 LTR ERV1 369 600 -12 2206 109 7 0 chr12 62693787 62694081 -81588408 - AluSx SINE Alu -11 301 6 2562 83 3 0 chr12 62694087 62694399 -81588090 - AluSq SINE Alu 0 313 1 1799 208 24 109 chr12 62694399 62694504 -81587985 + LTR9 LTR ERV1 605 612 0 2772 125 126 75 chr12 62694504 62694523 -81587966 + MER4A-int LTR ERV1 887 1052 -5546 2206 113 0 7 chr12 62694525 62694816 -81587673 - AluSc SINE Alu -20 289 1 237 310 0 0 chr12 62695323 62695381 -81587108 - L2 LINE L2 -1 3271 3214 745 280 119 12 chr12 62695511 62696010 -81586479 - L2 LINE L2 0 3313 2746 849 140 15 29 chr12 62696058 62696194 -81586295 + AluSq/x SINE Alu 1 134 -178 2439 87 0 3 chr12 62696194 62696494 -81585995 + AluSq SINE Alu 1 299 -14 1782 127 20 22 chr12 62696594 62696940 -81585549 - MER4A LTR ERV1 0 664 261 2562 105 66 5 chr12 62696967 62697376 -81585113 - MER57B LTR ERV1 0 434 1 1567 81 123 0 chr12 62697376 62697611 -81584878 - MER57B-int LTR ERV1 0 7537 7274 562 180 49 8 chr12 62697611 62697733 -81584756 - LTR54B LTR ERV1 -369 129 3 1170 100 0 0 chr12 62697733 62697893 -81584596 - MER57-int LTR ERV1 -390 7147 6988 6558 120 10 63 chr12 62697943 62699176 -81583313 - SVA Other Other -839 1386 364 1840 110 80 4 chr12 62699176 62699439 -81583050 + AluSq SINE Alu 20 302 -11 6558 120 10 63 chr12 62699439 62699728 -81582761 - SVA Other Other -1861 364 61 197 119 24 0 chr12 62699738 62699780 -81582709 + (CAA)n Simple_repeat Simple_repeat 2 44 0 3136 170 52 12 chr12 62699780 62700455 -81582034 + Charlie1 DNA MER1_type 1577 2278 -483 1134 161 29 95 chr12 62700455 62700742 -81581747 + AluJo SINE Alu 86 356 0 674 185 0 0 chr12 62700798 62700917 -81581572 - FLAM_A SINE Alu -6 136 18 2026 147 3 7 chr12 62700979 62701271 -81581218 + AluJb SINE Alu 1 291 -21 2439 90 0 0 chr12 62701275 62701575 -81580914 + AluSc SINE Alu 3 302 -7 2627 48 0 10 chr12 62701576 62701886 -81580603 + AluY SINE Alu 1 307 -4 1776 177 43 13 chr12 62701889 62702252 -81580237 - MLT2A2 LTR ERVL -149 304 8 1276 133 38 42 chr12 62702253 62702517 -81579972 - L1MB8 LINE L1 -45 6133 5871 2228 108 3 25 chr12 62702520 62702835 -81579654 - AluSx SINE Alu -4 308 1 737 195 133 36 chr12 62702840 62703142 -81579347 + L1MC5 LINE L1 7326 7656 -305 469 141 103 0 chr12 62703142 62703220 -81579269 + AluSq SINE Alu 2 87 -225 1046 71 0 0 chr12 62703220 62703346 -81579143 + AluSp/q SINE Alu 181 306 -7 2362 72 7 30 chr12 62703352 62703656 -81578833 + AluY SINE Alu 1 297 -14 2329 91 3 3 chr12 62703657 62703953 -81578536 + AluSg SINE Alu 1 296 -14 4220 164 17 27 chr12 62705503 62706806 -81575683 - L1P5 LINE L1 -518 5633 4332 349 195 0 0 chr12 62706804 62706881 -81575608 + L1 LINE L1 4216 4292 -1854 * 498 309 49 58 chr12 62706886 62707134 -81575355 - L1MEd LINE L1 -5168 951 697 180 0 0 0 chr12 62707134 62707154 -81575335 + (TG)n Simple_repeat Simple_repeat 1 20 0 498 309 49 58 chr12 62707154 62707286 -81575203 - L1MEd LINE L1 -5422 697 565 283 317 44 28 chr12 62707591 62707771 -81574718 - L1MEd LINE L1 -5936 183 1 1037 282 71 40 chr12 62707776 62708254 -81574235 - HAL1 LINE L1 -426 2081 1589 722 149 0 16 chr12 62708239 62708360 -81574129 + L1 LINE L1 4106 4224 -1922 * 2293 88 10 3 chr12 62708360 62708657 -81573832 - AluSq SINE Alu -14 299 1 499 245 24 7 chr12 62708882 62709039 -81573450 - L1MC/D LINE L1 -449 5672 5536 461 124 0 11 chr12 62709211 62709300 -81573189 + (CCG)n Simple_repeat Simple_repeat 2 89 0 23 0 0 0 chr12 62709311 62709334 -81573155 + GC_rich Low_complexity Low_complexity 1 23 0 195 247 24 106 chr12 62709757 62709842 -81572647 - MIR3 SINE MIR -41 167 90 2451 80 3 6 chr12 62710523 62710836 -81571653 - AluSx SINE Alu 0 312 1 220 204 0 0 chr12 62711205 62711249 -81571240 + C-rich Low_complexity Low_complexity 3 46 0 536 95 0 32 chr12 62712467 62712562 -81569927 + AluSp/q SINE Alu 216 307 -6 2152 115 0 0 chr12 62712734 62713043 -81569446 - AluSg SINE Alu 0 309 1 2313 111 3 16 chr12 62713047 62713363 -81569126 - AluSx SINE Alu 0 312 1 771 287 92 18 chr12 62713398 62713778 -81568711 + L2 LINE L2 2237 2644 -670 1060 127 12 24 chr12 62713778 62713943 -81568546 - AluSg/x SINE Alu -16 296 134 2325 125 0 0 chr12 62713943 62714248 -81568241 - AluSx SINE Alu -7 305 1 316 287 131 68 chr12 62714286 62714774 -81567715 - L1MC/D LINE L1 -461 5660 5273 556 167 20 0 chr12 62714777 62714879 -81567610 + AluJb SINE Alu 2 105 -207 4577 137 40 66 chr12 62715011 62716666 -81565823 + SVA Other Other 3 980 -406 2422 77 0 3 chr12 62716810 62717110 -81565379 - AluY SINE Alu -12 299 1 1573 192 0 4 chr12 62717148 62717419 -81565070 - AluJo SINE Alu -6 306 37 1998 129 0 40 chr12 62717447 62717772 -81564717 + AluJb SINE Alu 1 312 0 239 273 4 22 chr12 62719018 62719145 -81563344 + C-rich Low_complexity Low_complexity 1 216 0 463 10 106 0 chr12 62719355 62719459 -81563030 + (TA)n Simple_repeat Simple_repeat 1 115 0 2342 118 0 0 chr12 62719459 62719765 -81562724 - AluSx SINE Alu -6 306 1 1301 121 0 0 chr12 62719826 62720008 -81562481 - AluSg/x SINE Alu -2 310 129 2779 88 8 16 chr12 62720011 62720395 -81562094 - SVA Other Other 0 1386 1006 371 41 20 0 chr12 62720580 62720629 -81561860 - MER41-int LTR ERV1 -4851 1095 1046 2133 112 16 7 chr12 62720629 62720934 -81561555 + AluSg SINE Alu 1 308 -2 681 220 47 0 chr12 62721528 62721719 -81560770 - AluSg/x SINE Alu -12 300 101 6623 44 11 18 chr12 62721895 62722690 -81559799 + SVA Other Other 596 1385 -1 1181 139 12 0 chr12 62722691 62722864 -81559625 + AluSg/x SINE Alu 127 301 -11 658 245 139 0 chr12 62722873 62723089 -81559400 + L1MC4 LINE L1 7290 7535 -507 1714 198 0 29 chr12 62723089 62723261 -81559228 - AluJo SINE Alu -8 304 144 1725 173 7 23 chr12 62723261 62723568 -81558921 - AluJb SINE Alu -10 302 1 1714 198 0 29 chr12 62723568 62723708 -81558781 - AluJo SINE Alu -168 144 1 1868 166 0 13 chr12 62723713 62724014 -81558475 - AluJo SINE Alu -15 297 1 2248 95 3 0 chr12 62724079 62724397 -81558092 + AluSx SINE Alu 1 319 0 2083 139 0 0 chr12 62724398 62724692 -81557797 + AluSg SINE Alu 1 294 -16 297 290 84 19 chr12 62725306 62725461 -81557028 + L1MC4a LINE L1 5723 5887 -1921 189 0 0 0 chr12 62726269 62726290 -81556199 + (A)n Simple_repeat Simple_repeat 1 21 0 264 185 0 0 chr12 62727559 62727613 -81554876 + (TG)n Simple_repeat Simple_repeat 1 54 0 248 211 81 64 chr12 62729204 62729326 -81553163 - MIR SINE MIR -67 141 34 916 214 6 0 chr12 62729935 62730108 -81552381 - FAM SINE Alu -1 174 1 253 102 41 20 chr12 62732394 62732443 -81550046 - MER66A LTR ERV1 -143 335 286 2073 153 0 0 chr12 62733129 62733424 -81549065 - AluJb SINE Alu -17 295 1 1924 166 0 17 chr12 62734591 62734893 -81547596 - AluJb SINE Alu -15 297 1 434 288 90 49 chr12 62734904 62735171 -81547318 - L1ME4a LINE L1 -11 6110 5833 2294 96 7 13 chr12 62737320 62737622 -81544867 + AluSx SINE Alu 1 300 -12 2352 95 0 3 chr12 62737632 62737927 -81544562 + AluSg SINE Alu 1 294 -16 2033 48 48 8 chr12 62738104 62738355 -81544134 - AluY SINE Alu -13 298 38 2393 87 7 0 chr12 62738355 62738655 -81543834 - AluSp SINE Alu -11 302 1 1981 164 0 3 chr12 62738657 62738955 -81543534 - AluJb SINE Alu -15 297 1 2136 123 0 3 chr12 62738987 62739295 -81543194 - AluSx SINE Alu 0 307 1 1927 163 36 0 chr12 62740344 62740645 -81541844 + AluJb SINE Alu 1 312 0 530 156 0 11 chr12 62741019 62741109 -81541380 + AluJo SINE Alu 53 141 -171 1666 181 3 26 chr12 62741112 62741421 -81541068 + AluJo SINE Alu 11 312 0 403 231 128 85 chr12 62741421 62741515 -81540974 + L1ME4a LINE L1 5814 5903 -218 2091 100 50 0 chr12 62741515 62741794 -81540695 + AluSx SINE Alu 1 293 -19 403 231 128 85 chr12 62741794 62741957 -81540532 + L1ME4a LINE L1 5903 6118 -3 223 160 0 60 chr12 62742558 62742608 -81539881 + CT-rich Low_complexity Low_complexity 1 47 0 1262 179 26 18 chr12 62743095 62743368 -81539121 - AluJo SINE Alu -27 285 11 1097 282 82 2 chr12 62743373 62743774 -81538715 - L1ME4a LINE L1 -1998 5810 5378 1284 202 40 52 chr12 62743830 62744174 -81538315 - L1ME3 LINE L1 -1 6161 5821 2182 133 0 0 chr12 62744180 62744489 -81538000 - AluSx SINE Alu -3 309 1 736 147 85 0 chr12 62744598 62744727 -81537762 + FAM SINE Alu 18 157 -28 195 69 0 0 chr12 62744733 62744762 -81537727 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr12 62745848 62745869 -81536620 + GC_rich Low_complexity Low_complexity 1 21 0 2153 103 45 0 chr12 62748553 62748844 -81533645 - AluSc SINE Alu -5 304 1 1031 187 31 31 chr12 62748921 62749146 -81533343 + Charlie1 DNA MER1_type 1 225 -2536 316 161 32 0 chr12 62749152 62749214 -81533275 + Charlie1 DNA MER1_type 2631 2694 -67 1413 158 38 0 chr12 62749219 62749459 -81533030 - AluSg SINE Alu -17 293 45 264 146 0 0 chr12 62749461 62749502 -81532987 + AluS SINE Alu 36 76 -227 1324 147 0 5 chr12 62749639 62749830 -81532659 - AluSq SINE Alu -123 190 1 2210 114 7 3 chr12 62749841 62750140 -81532349 - AluSq SINE Alu -12 301 2 555 185 25 0 chr12 62750140 62750259 -81532230 - Charlie1 DNA MER1_type -744 2017 1896 757 243 92 78 chr12 62750275 62750675 -81531814 - MLT1H LTR MaLR -69 480 75 2272 119 0 0 chr12 62751315 62751625 -81530864 - AluSg SINE Alu 0 310 1 234 345 24 12 chr12 62751630 62751714 -81530775 + L2 LINE L2 3225 3309 -4 815 157 13 20 chr12 62752419 62752572 -81529917 + AluSp/q SINE Alu 160 311 -2 946 220 59 97 chr12 62752588 62752992 -81529497 + L1MC4 LINE L1 6784 7172 -870 455 186 10 10 chr12 62753008 62753105 -81529384 + U6 snRNA snRNA 1 97 -10 491 61 0 0 chr12 62753598 62753664 -81528825 - Alu SINE Alu -233 78 13 189 0 0 0 chr12 62753668 62753689 -81528800 + (T)n Simple_repeat Simple_repeat 1 21 0 978 98 0 0 chr12 62753697 62753819 -81528670 + AluSq/x SINE Alu 14 135 -177 1512 210 34 10 chr12 62753819 62754110 -81528379 + AluJb SINE Alu 1 298 -14 1779 161 7 18 chr12 62754112 62754392 -81528097 + AluJb SINE Alu 3 279 -33 200 100 25 0 chr12 62754401 62754441 -81528048 + (TC)n Simple_repeat Simple_repeat 2 42 0 1193 76 0 0 chr12 62754664 62754808 -81527681 - AluSg/x SINE Alu -8 302 159 4695 30 0 2 chr12 62755168 62755740 -81526749 + L1PA5 LINE L1 5576 6146 -8 757 243 92 78 chr12 62756320 62756720 -81525769 + MLT1H LTR MaLR 75 480 -69 512 189 27 0 chr12 62756736 62756847 -81525642 + Charlie1 DNA MER1_type 1896 2009 -752 2249 115 0 3 chr12 62758127 62758432 -81524057 + AluSx SINE Alu 1 304 -8 319 336 161 5 chr12 62758434 62758645 -81523844 - L2 LINE L2 -1098 2216 1973 1719 179 98 22 chr12 62758646 62759014 -81523475 - MSTD LTR MaLR 0 396 1 865 182 88 24 chr12 62759567 62759619 -81522870 - AluJo SINE Alu -131 181 134 207 0 0 0 chr12 62759619 62759642 -81522847 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 865 182 88 24 chr12 62759642 62759759 -81522730 - AluJo SINE Alu -178 134 1 271 354 88 9 chr12 62759839 62760054 -81522435 + MLT1H-int LTR MaLR 309 540 -831 2364 104 0 0 chr12 62760054 62760352 -81522137 + AluSc SINE Alu 1 298 -11 180 0 0 0 chr12 62760453 62760473 -81522016 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 771 223 11 11 chr12 62760675 62760850 -81521639 + FAM SINE Alu 1 175 0 439 276 72 110 chr12 62761358 62761536 -81520953 + MLT1H-int LTR MaLR 1013 1171 -200 1068 196 5 23 chr12 62761536 62761750 -81520739 + MER63A DNA MER1_type 1 210 0 439 276 72 110 chr12 62761750 62761944 -81520545 + MLT1H-int LTR MaLR 1171 1371 0 240 297 0 0 chr12 62761963 62762027 -81520462 + MLT1H LTR MaLR 20 83 -459 262 316 13 0 chr12 62762127 62762203 -81520286 + MLT1H LTR MaLR 229 305 -244 978 160 11 11 chr12 62762207 62762382 -81520107 + MLT1A1 LTR MaLR 18 192 -173 497 212 217 0 chr12 62762422 62762579 -81519910 - MIR SINE MIR -46 216 26 2232 107 3 0 chr12 62762602 62762881 -81519608 + AluSx SINE Alu 5 303 -9 217 0 0 0 chr12 62762881 62762905 -81519584 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2232 107 3 0 chr12 62762905 62762916 -81519573 + AluSx SINE Alu 303 312 0 1220 141 0 32 chr12 62762916 62763101 -81519388 + AluJb SINE Alu 134 312 0 383 276 20 0 chr12 62763231 62763329 -81519160 - L1MEd LINE L1 -5458 661 562 2024 243 97 10 chr12 62763479 62763993 -81518496 + MER77 LTR ERV1 41 599 -6 23 33 0 0 chr12 62764918 62764948 -81517541 + AT_rich Low_complexity Low_complexity 1 30 0 1718 96 118 65 chr12 62765190 62765476 -81517013 + THE1C LTR MaLR 1 311 -64 2225 76 3 32 chr12 62765476 62765790 -81516699 + AluSp SINE Alu 3 307 -6 1718 96 118 65 chr12 62765790 62765859 -81516630 + THE1C LTR MaLR 311 375 0 270 0 0 0 chr12 62766209 62766239 -81516250 + (T)n Simple_repeat Simple_repeat 1 30 0 2147 114 3 0 chr12 62766985 62767292 -81515197 - AluSp SINE Alu -5 308 1 235 130 43 0 chr12 62767651 62767697 -81514792 - L1MB4 LINE L1 0 6180 6133 2805 133 50 41 chr12 62767697 62768233 -81514256 - L1MB3 LINE L1 -24 6159 5619 1688 159 28 3 chr12 62768266 62768555 -81513934 + AluJb SINE Alu 1 296 -16 303 280 61 37 chr12 62768721 62768816 -81513673 - MIR3 SINE MIR 0 262 171 1978 126 0 35 chr12 62768816 62769133 -81513356 - AluSx SINE Alu -6 306 1 303 280 61 37 chr12 62769133 62769233 -81513256 - MIR3 SINE MIR -91 171 60 566 164 153 50 chr12 62769248 62769455 -81513034 - LTR45B LTR ERV1 0 609 352 230 231 0 0 chr12 62769485 62769537 -81512952 - MER72 LTR ERV1 -261 461 410 246 216 0 0 chr12 62769757 62769808 -81512681 - MER115 DNA AcHobo -26 667 617 252 0 0 0 chr12 62769832 62769860 -81512629 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 346 219 0 0 chr12 62769881 62769954 -81512535 - LTR30 LTR ERV1 -98 624 552 1959 131 10 3 chr12 62769966 62770271 -81512218 - AluSx SINE Alu -5 307 1 559 198 0 0 chr12 62770337 62770433 -81512056 - FRAM SINE Alu -84 92 1 488 365 50 28 chr12 62770505 62770826 -81511663 - MER115 DNA AcHobo -332 361 34 2229 91 0 3 chr12 62770967 62771263 -81511226 + AluSc SINE Alu 1 295 -14 26 0 0 0 chr12 62771736 62771762 -81510727 + AT_rich Low_complexity Low_complexity 1 26 0 2288 56 0 11 chr12 62771913 62772227 -81510262 - AluY SINE Alu 0 311 1 2120 116 7 3 chr12 62772227 62772537 -81509952 - AluSq SINE Alu -2 311 1 737 173 15 15 chr12 62772620 62772753 -81509736 - AluJb SINE Alu -22 290 158 2115 112 0 0 chr12 62772801 62773096 -81509393 - AluSx SINE Alu -13 299 5 2008 104 3 14 chr12 62773108 62773418 -81509071 - AluSp SINE Alu 0 307 1 1638 108 19 4 chr12 62773436 62773696 -81508793 - AluY SINE Alu -19 292 29 1517 95 114 49 chr12 62773809 62774072 -81508417 - AluSp SINE Alu -33 280 1 967 151 44 0 chr12 62774087 62774246 -81508243 + AluJb SINE Alu 133 298 -14 1927 139 0 3 chr12 62774338 62774647 -81507842 + AluSq SINE Alu 1 308 -5 2061 84 23 20 chr12 62774662 62774961 -81507528 + AluSx SINE Alu 1 300 -12 2154 57 47 24 chr12 62775321 62775619 -81506870 + AluY SINE Alu 1 305 -6 338 243 122 9 chr12 62775672 62775779 -81506710 + MIR SINE MIR 104 222 -40 232 385 145 0 chr12 62775884 62776084 -81506405 - L2 LINE L2 -460 2854 2626 1625 167 7 20 chr12 62776110 62776244 -81506245 + AluJo SINE Alu 1 135 -177 1873 144 0 7 chr12 62776244 62776542 -81505947 + AluSx SINE Alu 1 296 -16 1625 167 7 20 chr12 62776542 62776713 -81505776 + AluJo SINE Alu 135 302 -10 1910 184 54 84 chr12 62776755 62776770 -81505719 - L1MC5 LINE L1 -298 7663 7649 2181 108 0 3 chr12 62776770 62777075 -81505414 + AluSg SINE Alu 1 304 -6 1910 184 54 84 chr12 62777075 62777207 -81505282 - L1MC5 LINE L1 -312 7649 7515 1966 113 21 3 chr12 62777207 62777498 -81504991 - AluSx SINE Alu -12 300 5 1910 184 54 84 chr12 62777498 62778072 -81504417 - L1MC5 LINE L1 -446 7515 6963 2219 85 0 3 chr12 62778404 62778698 -81503791 + AluSx SINE Alu 1 293 -19 28 29 0 0 chr12 62778698 62778733 -81503756 + AT_rich Low_complexity Low_complexity 1 35 0 2060 107 0 7 chr12 62778743 62779041 -81503448 + AluSg1 SINE Alu 1 296 -13 1862 141 0 20 chr12 62779057 62779356 -81503133 + AluSq SINE Alu 7 299 -14 1957 105 3 75 chr12 62780148 62780481 -81502008 + AluSg SINE Alu 1 309 -1 197 338 44 0 chr12 62780482 62780550 -81501939 + L2 LINE L2 3219 3289 -24 1818 70 47 8 chr12 62780731 62780987 -81501502 - AluY SINE Alu -8 303 38 2250 87 7 0 chr12 62780987 62781287 -81501202 - AluSp SINE Alu -11 302 1 1828 164 0 3 chr12 62781289 62781587 -81500902 - AluJb SINE Alu -15 297 1 1985 123 0 3 chr12 62781619 62781927 -81500562 - AluSx SINE Alu 0 307 1 1770 163 36 0 chr12 62782976 62783277 -81499212 + AluJb SINE Alu 1 312 0 556 138 0 11 chr12 62783651 62783738 -81498751 + AluJo SINE Alu 53 138 -174 1543 185 0 19 chr12 62783744 62784052 -81498437 + AluJo SINE Alu 11 312 0 230 287 11 0 chr12 62784052 62784146 -81498343 + L1ME4a LINE L1 5814 5908 -213 1943 100 50 0 chr12 62784146 62784425 -81498064 + AluSx SINE Alu 1 293 -19 328 200 148 26 chr12 62784473 62784588 -81497901 + L1ME4a LINE L1 5990 6118 -3 223 160 0 60 chr12 62785189 62785239 -81497250 + CT-rich Low_complexity Low_complexity 1 47 0 2232 88 3 0 chr12 62786092 62786387 -81496102 - AluSp SINE Alu -17 296 1 975 154 112 0 chr12 62786388 62786576 -81495913 + L1MB7 LINE L1 5910 6118 -66 1283 109 19 5 chr12 62786685 62786895 -81495594 + AluSg/x SINE Alu 91 303 -9 631 118 65 0 chr12 62786909 62787002 -81495487 - FLAM_C SINE Alu -26 117 19 2105 131 0 3 chr12 62787073 62787379 -81495110 - AluSx SINE Alu -7 305 1 2321 91 3 0 chr12 62789212 62789521 -81492968 + AluSg SINE Alu 1 310 0 2275 78 0 0 chr12 62790001 62790296 -81492193 + AluSq SINE Alu 1 295 -18 342 252 45 90 chr12 62790701 62790856 -81491633 + L1ME4a LINE L1 5974 6121 0 22 56 0 0 chr12 62790904 62790940 -81491549 + AT_rich Low_complexity Low_complexity 1 36 0 1920 152 0 0 chr12 62791177 62791474 -81491015 + AluSx SINE Alu 1 297 -15 1307 183 44 11 chr12 62791528 62791801 -81490688 - AluJb SINE Alu -30 282 1 369 285 131 68 chr12 62791803 62792291 -81490198 + L1ME3 LINE L1 5273 5660 -461 2122 129 0 0 chr12 62792329 62792632 -81489857 + AluSx SINE Alu 1 303 -9 1342 201 40 52 chr12 62792644 62792988 -81489501 + L1ME3 LINE L1 5821 6161 -1 1264 272 85 5 chr12 62793045 62793451 -81489038 + L1MC4a LINE L1 5378 5825 -1983 1582 158 3 16 chr12 62793451 62793754 -81488735 + AluJo SINE Alu 11 309 -3 1264 272 85 5 chr12 62793754 62793796 -81488693 + L1MC4a LINE L1 5825 5862 -1946 4647 55 0 11 chr12 62793952 62794569 -81487920 - SVA Other Other -776 610 1 1018 112 0 0 chr12 62794597 62794731 -81487758 - AluSq/x SINE Alu -178 134 1 1527 219 129 30 chr12 62794731 62795264 -81487225 - L1MC4 LINE L1 -750 7292 6707 2028 122 6 10 chr12 62795266 62795577 -81486912 - AluSg SINE Alu 0 310 1 998 84 15 0 chr12 62795579 62795710 -81486779 - AluSq/x SINE Alu -177 135 3 273 187 120 0 chr12 62795725 62795800 -81486689 + L1MC4a LINE L1 5884 5967 -1841 922 131 88 19 chr12 62795972 62796132 -81486357 + AluSg/x SINE Alu 130 300 -12 461 223 96 43 chr12 62796136 62796418 -81486071 + L1ME4a LINE L1 5816 6112 -9 21 0 0 0 chr12 62796419 62796440 -81486049 + AT_rich Low_complexity Low_complexity 1 21 0 1713 53 8 25 chr12 62796565 62796808 -81485681 + HERVL-A2 LTR ERVL 5414 5652 -2 1701 96 0 0 chr12 62796810 62797030 -81485459 + MLT2A2 LTR ERVL 1 220 -233 2441 48 0 0 chr12 62797398 62797691 -81484798 + AluY SINE Alu 1 293 -18 1237 99 0 22 chr12 62797877 62797897 -81484592 - AluSg/x SINE Alu -9 303 284 2236 107 0 0 chr12 62797897 62798207 -81484282 - AluSg SINE Alu 0 310 1 188 86 29 0 chr12 62798208 62798243 -81484246 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1237 99 0 22 chr12 62798243 62798402 -81484087 - AluSg/x SINE Alu -27 285 126 313 167 0 0 chr12 62798467 62798515 -81483974 - MER66B LTR ERV1 -140 346 299 2544 146 27 5 chr12 62798838 62799250 -81483239 + MSTB LTR MaLR 1 421 -5 995 249 13 9 chr12 62799426 62799655 -81482834 - MIR SINE MIR -1 261 32 260 26 0 26 chr12 62801801 62801839 -81480650 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 252 0 0 0 chr12 62801929 62801957 -81480532 + (GA)n Simple_repeat Simple_repeat 2 29 0 207 258 145 0 chr12 62802116 62802178 -81480311 - L2 LINE L2 -1 3271 3201 483 241 78 0 chr12 62802467 62802583 -81479906 + MIR SINE MIR 83 207 -55 1956 90 18 0 chr12 62805633 62805912 -81476577 + L1MA1 LINE L1 6019 6302 0 274 168 175 84 chr12 62806021 62806164 -81476325 + MER53 DNA DNA 1 156 -33 371 242 0 0 chr12 62809054 62809120 -81473369 - MER2 DNA MER2_type 0 345 280 1824 111 77 27 chr12 62809138 62809435 -81473054 + AluSx SINE Alu 1 312 0 1233 172 10 0 chr12 62809442 62809651 -81472838 - MER2 DNA MER2_type -134 211 1 2404 66 3 3 chr12 62810458 62810763 -81471726 - AluY SINE Alu -6 305 1 2112 109 0 3 chr12 62810996 62811290 -81471199 - AluSx SINE Alu -14 298 6 2155 114 0 3 chr12 62811540 62811838 -81470651 - AluSq SINE Alu -16 297 1 2201 72 9 82 chr12 62813765 62814084 -81468405 - AluSx SINE Alu -14 298 3 209 239 22 0 chr12 62815742 62815788 -81466701 + MIR SINE MIR 216 262 0 383 204 262 0 chr12 62816354 62816457 -81466032 + MER5B DNA MER1_type 1 130 -48 1614 126 37 41 chr12 62816457 62816726 -81465763 - AluJb SINE Alu 0 312 45 275 122 0 0 chr12 62816728 62816769 -81465720 + AluS SINE Alu 36 76 -227 24 0 0 0 chr12 62816824 62816848 -81465641 + AT_rich Low_complexity Low_complexity 1 24 0 231 184 0 0 chr12 62816848 62816886 -81465603 - MER5B DNA MER1_type -140 38 1 2295 96 3 10 chr12 62818863 62819166 -81463323 + AluSx SINE Alu 1 301 -11 2586 59 0 0 chr12 62820038 62820342 -81462147 - AluY SINE Alu -7 304 1 217 293 189 0 chr12 62821969 62822075 -81460414 + MIR SINE MIR 89 214 -48 2168 114 20 3 chr12 62822293 62822592 -81459897 - AluSx SINE Alu -8 304 1 400 265 0 49 chr12 62830608 62830793 -81451696 + G-rich Low_complexity Low_complexity 3 178 0 263 136 17 0 chr12 62831055 62831114 -81451375 + (CCG)n Simple_repeat Simple_repeat 2 61 0 201 250 24 107 chr12 62831565 62831649 -81450840 - MIR3 SINE MIR -42 166 90 2437 80 3 6 chr12 62832330 62832643 -81449846 - AluSx SINE Alu 0 312 1 210 178 0 22 chr12 62833012 62833057 -81449432 + C-rich Low_complexity Low_complexity 3 46 0 1514 226 161 80 chr12 62834348 62834864 -81447625 - L2 LINE L2 0 3313 2840 2209 97 10 3 chr12 62834864 62835154 -81447335 + AluSq SINE Alu 1 292 -21 1514 226 161 80 chr12 62835154 62835426 -81447063 - L2 LINE L2 -473 2840 2223 2249 113 23 0 chr12 62835706 62836008 -81446481 + AluSc SINE Alu 1 309 0 761 265 0 0 chr12 62836149 62836319 -81446170 - MER58A DNA MER1_type -23 201 32 2452 66 0 10 chr12 62839369 62839672 -81442817 + AluSq SINE Alu 1 300 -13 1830 92 13 0 chr12 62839740 62839978 -81442511 - AluSg/x SINE Alu 0 312 72 1309 94 24 0 chr12 62840196 62840366 -81442123 - AluSq SINE Alu -11 302 129 3777 48 5 9 chr12 62840369 62840806 -81441683 - SVA Other Other 0 1386 952 2161 127 7 10 chr12 62841032 62841339 -81441150 + AluSx SINE Alu 1 306 -6 2459 85 7 0 chr12 62841497 62841803 -81440686 + AluSq SINE Alu 1 308 -5 748 197 0 15 chr12 62841817 62841954 -81440535 + FRAM SINE Alu 35 169 -7 195 305 23 84 chr12 62842507 62842638 -81439851 - L2 LINE L2 -12 3260 3138 1532 214 13 0 chr12 62842659 62842963 -81439526 + AluSc SINE Alu 1 308 -1 498 143 0 0 chr12 62842967 62843037 -81439452 + AluS SINE Alu 2 71 -241 807 218 13 39 chr12 62843522 62843756 -81438733 - AluSx SINE Alu -83 229 2 1888 141 36 10 chr12 62843787 62844091 -81438398 - AluSx SINE Alu 0 312 1 2175 123 0 7 chr12 62844189 62844489 -81438000 - AluSx SINE Alu -14 298 1 1523 185 57 27 chr12 62844637 62844935 -81437554 - AluJo SINE Alu -5 307 1 182 222 16 63 chr12 62845042 62845105 -81437384 + L2 LINE L2 2791 2850 -464 2254 71 17 10 chr12 62845512 62845807 -81436682 - AluSx SINE Alu -5 307 11 1609 167 21 21 chr12 62845826 62846107 -81436382 + AluJb SINE Alu 1 281 -31 262 105 0 0 chr12 62846109 62846147 -81436342 - U2 snRNA snRNA -150 38 1 189 0 0 0 chr12 62846159 62846180 -81436309 + (A)n Simple_repeat Simple_repeat 1 21 0 2177 89 52 0 chr12 62846181 62846472 -81436017 + AluSp SINE Alu 1 306 -7 889 302 145 50 chr12 62846546 62846978 -81435511 - L2 LINE L2 -835 2479 2089 835 138 23 15 chr12 62846978 62847108 -81435381 + FLAM_C SINE Alu 3 133 0 889 302 145 50 chr12 62847108 62847759 -81434730 - L2 LINE L2 -1225 2089 1293 265 329 108 26 chr12 62847806 62847889 -81434600 - L2 LINE L2 -281 2991 2916 1534 207 14 10 chr12 62847889 62848184 -81434305 + AluJo SINE Alu 1 296 -16 2123 135 0 3 chr12 62848187 62848490 -81433999 + AluSg SINE Alu 1 302 -8 265 329 108 26 chr12 62848490 62848766 -81433723 - L2 LINE L2 -357 2915 2594 2039 123 17 20 chr12 62848767 62849068 -81433421 + AluSx SINE Alu 1 300 -12 402 342 40 5 chr12 62849076 62849278 -81433211 - MLT1I LTR MaLR -6 403 195 279 269 223 18 chr12 62849382 62849664 -81432825 - L2 LINE L2 -799 2515 2176 330 262 56 32 chr12 62850069 62850195 -81432294 - MIR SINE MIR -57 205 77 1814 109 74 0 chr12 62850229 62850485 -81432004 - AluSx SINE Alu -13 299 25 2194 100 7 32 chr12 62850491 62850801 -81431688 - AluSg SINE Alu -8 302 1 1757 156 11 4 chr12 62850825 62851101 -81431388 - AluSg SINE Alu -32 278 1 322 309 8 0 chr12 62851215 62851338 -81431151 - L1MC4 LINE L1 -1 8041 7918 187 200 17 17 chr12 62851344 62851404 -81431085 + CT-rich Low_complexity Low_complexity 2 61 0 1275 200 69 212 chr12 62851464 62852231 -81430258 - L1MC4 LINE L1 -115 7693 7176 653 118 0 10 chr12 62852231 62852333 -81430156 - U6 snRNA snRNA -6 101 1 1275 200 69 212 chr12 62852333 62852744 -81429745 - L1MC4 LINE L1 -632 7176 6708 2316 110 7 0 chr12 62852769 62853078 -81429411 - AluSq SINE Alu -2 311 1 824 188 0 0 chr12 62853087 62853220 -81429269 - FLAM_C SINE Alu 0 133 1 2323 103 3 10 chr12 62853351 62853662 -81428827 - AluY SINE Alu -2 309 1 1147 56 7 21 chr12 62853665 62853808 -81428681 - AluSg SINE Alu -169 141 1 2161 127 7 10 chr12 62853966 62854273 -81428216 - AluSx SINE Alu -6 306 1 1977 164 41 19 chr12 62854372 62854738 -81427751 - THE1C LTR MaLR 0 375 2 1451 141 169 16 chr12 62855081 62855330 -81427159 + AluSx SINE Alu 13 299 -13 1750 193 3 3 chr12 62855662 62855962 -81426527 - AluJo SINE Alu -12 300 1 207 0 0 0 chr12 62856190 62856213 -81426276 + (T)n Simple_repeat Simple_repeat 1 23 0 237 65 0 0 chr12 62856985 62857016 -81425473 + (T)n Simple_repeat Simple_repeat 1 31 0 420 174 10 41 chr12 62857667 62857765 -81424724 - MSTD LTR MaLR -202 194 100 900 144 8 0 chr12 62857949 62858081 -81424408 - AluJb SINE Alu -179 133 1 450 171 91 71 chr12 62858081 62858166 -81424323 - L1MC5 LINE L1 -174 7787 7705 1790 177 0 20 chr12 62858166 62858299 -81424190 + AluJo SINE Alu 4 138 -174 2021 144 0 7 chr12 62858299 62858597 -81423892 + AluSx SINE Alu 1 296 -16 1790 177 0 20 chr12 62858597 62858768 -81423721 + AluJo SINE Alu 138 302 -10 450 171 91 71 chr12 62858768 62858825 -81423664 - L1MC5 LINE L1 -256 7705 7651 2393 102 0 3 chr12 62858825 62859130 -81423359 + AluSg SINE Alu 1 304 -6 450 171 91 71 chr12 62859130 62859238 -81423251 - L1MC5 LINE L1 -310 7651 7531 4861 111 111 17 chr12 62859401 62860435 -81422054 + pTR5 LTR ERV1 749 2028 -410 325 234 11 0 chr12 62860436 62860530 -81421959 + LTR30 LTR ERV1 548 642 -80 1575 77 0 9 chr12 62860533 62860754 -81421735 + pTR5 LTR ERV1 172 390 -2048 665 176 57 0 chr12 62860780 62860939 -81421550 + Charlie1 DNA MER1_type 2594 2761 0 194 367 86 0 chr12 62860942 62861070 -81421419 - L2 LINE L2 -887 2427 2289 2300 103 0 10 chr12 62861229 62861531 -81420958 - AluSq SINE Alu -14 299 1 2819 85 15 55 chr12 62861573 62862030 -81420459 - MER83 LTR ERV1 -9 439 1 216 286 43 43 chr12 62862467 62862537 -81419952 - L2 LINE L2 0 3272 3203 680 257 14 95 chr12 62863382 62863678 -81418811 + L1MEc LINE L1 39 310 -6086 1793 189 7 0 chr12 62863678 62863979 -81418510 + AluJo SINE Alu 1 303 -9 2332 112 3 3 chr12 62863992 62864305 -81418184 + AluSq SINE Alu 1 313 0 2695 208 66 41 chr12 62864307 62865038 -81417451 + L1MD2 LINE L1 5601 6349 -10 353 282 48 10 chr12 62865040 62865143 -81417346 + L1MEc LINE L1 878 984 -5412 1851 114 0 4 chr12 62865143 62865389 -81417100 + AluSq SINE Alu 1 245 -68 407 148 0 49 chr12 62865389 62865470 -81417019 - FRAM/FAM SINE Alu -102 74 1 1760 140 19 0 chr12 62865512 62865777 -81416712 - MER1B DNA MER1_type 0 339 70 693 110 28 0 chr12 62865853 62865962 -81416527 - AluSp/q SINE Alu -9 304 193 1149 118 18 18 chr12 62865997 62866167 -81416322 + AluSp SINE Alu 1 170 -143 678 127 76 0 chr12 62866267 62866424 -81416065 - AluSc SINE Alu -134 175 7 2105 135 3 0 chr12 62866430 62866727 -81415762 - AluSx SINE Alu -14 298 1 416 183 0 0 chr12 62866748 62866830 -81415659 + FAM SINE Alu 102 183 -2 1571 208 145 4 chr12 62866835 62867331 -81415158 + L1MEc LINE L1 994 1559 -4658 2103 137 17 3 chr12 62867342 62867642 -81414847 + AluSx SINE Alu 1 304 -8 1220 101 184 34 chr12 62867651 62867858 -81414631 + AluSx SINE Alu 4 241 -71 289 157 0 57 chr12 62867859 62867929 -81414560 + L1MA10 LINE L1 6269 6334 0 2144 96 27 10 chr12 62868251 62868544 -81413945 + AluSg SINE Alu 1 298 -12 2116 99 14 10 chr12 62868548 62868842 -81413647 + AluSp SINE Alu 1 295 -18 467 94 0 0 chr12 62868842 62868906 -81413583 - AluS SINE Alu -247 65 2 578 231 48 0 chr12 62868927 62869074 -81413415 + MIR SINE MIR 109 262 0 2307 91 0 3 chr12 62869485 62869811 -81412678 + AluSx SINE Alu 1 325 0 2201 97 10 23 chr12 62869824 62870123 -81412366 + AluSc SINE Alu 1 295 -14 2030 144 0 20 chr12 62870133 62870438 -81412051 + AluSq SINE Alu 1 299 -14 2046 99 3 73 chr12 62871230 62871556 -81410933 + AluSg SINE Alu 1 305 0 4725 28 0 2 chr12 62872145 62872717 -81409772 + L1PA5 LINE L1 5576 6146 -8 200 100 25 0 chr12 62873634 62873674 -81408815 + (GA)n Simple_repeat Simple_repeat 2 42 0 1779 161 7 18 chr12 62873683 62873963 -81408526 - AluJb SINE Alu -33 279 3 1512 210 34 10 chr12 62873965 62874256 -81408233 - AluJb SINE Alu -14 298 1 605 144 10 10 chr12 62874256 62874360 -81408129 - AluSq/x SINE Alu -178 135 32 996 164 44 0 chr12 62874377 62874536 -81407953 + AluJb SINE Alu 133 298 -14 2534 68 3 3 chr12 62874628 62874935 -81407554 + AluSp SINE Alu 1 307 -6 1819 127 8 15 chr12 62874997 62875257 -81407232 - AluSx SINE Alu -54 258 1 745 216 7 0 chr12 62875511 62875659 -81406830 - FRAM SINE Alu -23 153 5 267 159 175 0 chr12 62875664 62875727 -81406762 - MER46B DNA MER2_type -181 55 107 248 118 0 39 chr12 62875725 62875776 -81406713 + Alu SINE Alu 252 300 -1 * 2467 77 3 0 chr12 62875786 62876083 -81406406 + AluSp SINE Alu 1 298 -15 2011 121 14 0 chr12 62876313 62876602 -81405887 + AluSx SINE Alu 1 293 -19 2235 119 0 0 chr12 62876741 62877034 -81405455 + AluSx SINE Alu 1 293 -19 270 321 24 12 chr12 62877717 62877801 -81404688 - L2 LINE L2 -4 3309 3225 1741 174 0 0 chr12 62877806 62878088 -81404401 + AluSg SINE Alu 1 282 -28 456 231 31 75 chr12 62878099 62878259 -81404230 - L2 LINE L2 -282 3031 2879 1971 85 32 79 chr12 62878314 62878630 -81403859 + AluY SINE Alu 1 301 -10 2204 120 3 0 chr12 62878710 62879011 -81403478 - AluSx SINE Alu -10 302 1 755 163 0 8 chr12 62879070 62879199 -81403290 + FLAM_C SINE Alu 2 129 -4 1578 150 66 0 chr12 62879416 62879689 -81402800 + AluJb SINE Alu 3 293 -19 23 105 0 0 chr12 62880587 62880673 -81401816 + GC_rich Low_complexity Low_complexity 1 86 0 31 76 0 0 chr12 62880721 62880787 -81401702 + GC_rich Low_complexity Low_complexity 1 66 0 300 344 0 23 chr12 62880836 62880964 -81401525 + G-rich Low_complexity Low_complexity 4 128 0 207 0 0 0 chr12 62881946 62881969 -81400520 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2024 140 0 10 chr12 62881971 62882264 -81400225 - AluSx SINE Alu -22 290 1 498 101 101 0 chr12 62882401 62882480 -81400009 + AluJ/FLAM SINE Alu 2 88 -224 287 261 84 35 chr12 62882499 62882641 -81399848 - MIR SINE MIR 0 262 114 2179 94 0 85 chr12 62882663 62882991 -81399498 - AluSx SINE Alu -12 300 1 1930 100 26 44 chr12 62882991 62883247 -81399242 - LTR56 LTR ERV1 -110 335 84 1488 180 0 75 chr12 62883247 62883582 -81398907 - AluJo SINE Alu 0 312 1 1930 100 26 44 chr12 62883582 62883665 -81398824 - LTR56 LTR ERV1 -361 84 1 2388 97 0 0 chr12 62883764 62884062 -81398427 + AluSg SINE Alu 1 298 -12 1304 165 38 52 chr12 62885707 62885811 -81396678 + AluJo SINE Alu 1 105 -197 2372 98 0 0 chr12 62885811 62886107 -81396382 - AluSg SINE Alu -13 297 2 1304 165 38 52 chr12 62886107 62886131 -81396358 + AluJo SINE Alu 105 128 -174 2325 105 7 0 chr12 62886131 62886426 -81396063 - AluSg SINE Alu -13 297 1 1982 166 3 19 chr12 62886428 62886612 -81395877 - AluJb SINE Alu -1 311 133 2392 78 0 3 chr12 62886612 62886930 -81395559 - AluY SINE Alu 0 311 2 1982 166 3 19 chr12 62886930 62887059 -81395430 - AluJb SINE Alu -179 133 3 1304 165 38 52 chr12 62887059 62887217 -81395272 + AluJo SINE Alu 129 287 -15 2051 78 18 14 chr12 62887352 62887634 -81394855 + AluY SINE Alu 1 283 -28 254 0 151 0 chr12 62887831 62887917 -81394572 + (TA)n Simple_repeat Simple_repeat 1 99 0 * 520 108 60 12 chr12 62887902 62888069 -81394420 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 272 368 130 12 chr12 62888175 62888422 -81394067 - L2 LINE L2 -79 3193 2918 386 297 38 124 chr12 62888429 62888653 -81393836 + L2 LINE L2 2808 3050 -222 414 0 0 0 chr12 62888653 62888699 -81393790 + (TG)n Simple_repeat Simple_repeat 1 46 0 2107 107 4 4 chr12 62888699 62888980 -81393509 - AluSx SINE Alu -31 281 1 386 297 38 124 chr12 62888980 62889075 -81393414 + L2 LINE L2 3049 3151 -121 2374 84 10 0 chr12 62889075 62889371 -81393118 - AluSx SINE Alu -13 299 1 386 297 38 124 chr12 62889371 62889550 -81392939 + L2 LINE L2 3151 3265 -7 510 327 125 20 chr12 62889687 62890192 -81392297 - L2 LINE L2 -560 2754 2197 2218 90 29 26 chr12 62890197 62890509 -81391980 + AluSq SINE Alu 1 313 0 207 0 0 0 chr12 62890565 62890588 -81391901 + (A)n Simple_repeat Simple_repeat 1 23 0 875 217 71 4 chr12 62891533 62891773 -81390716 - MIR SINE MIR -2 260 5 180 111 0 0 chr12 62892374 62892401 -81390088 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 2210 114 3 0 chr12 62893493 62893800 -81388689 - AluSx SINE Alu -4 308 1 2242 95 7 3 chr12 62894091 62894385 -81388104 + AluSx SINE Alu 1 295 -17 222 220 68 0 chr12 62894492 62894551 -81387938 - MIR SINE MIR 0 262 200 1495 231 46 43 chr12 62894572 62894944 -81387545 + MLT1H1 LTR MaLR 129 501 -54 426 191 112 0 chr12 62894981 62895070 -81387419 + AluJ/FLAM SINE Alu 2 100 -212 2201 98 0 41 chr12 62895081 62895399 -81387090 - AluSq SINE Alu -8 305 1 659 278 105 96 chr12 62895399 62895563 -81386926 - L2 LINE L2 -10 3303 3142 2260 120 0 0 chr12 62895563 62895863 -81386626 + AluSg SINE Alu 1 300 -10 659 278 105 96 chr12 62895863 62895976 -81386513 - L2 LINE L2 -171 3142 3032 1545 150 55 55 chr12 62895976 62896283 -81386206 - AluJo SINE Alu -5 307 1 659 278 105 96 chr12 62896283 62896802 -81385687 - L2 LINE L2 -281 3032 2482 709 173 0 0 chr12 62896909 62897019 -81385470 + FLAM_C SINE Alu 2 111 -32 654 238 6 28 chr12 62897038 62897219 -81385270 - AluSg/x SINE Alu -8 304 128 2246 101 0 3 chr12 62897222 62897537 -81384952 - AluSx SINE Alu 0 314 1 26 0 0 0 chr12 62897537 62897563 -81384926 + AT_rich Low_complexity Low_complexity 1 26 0 1340 234 115 25 chr12 62897564 62897758 -81384731 - L2 LINE L2 -976 2338 2163 1530 188 14 35 chr12 62897758 62898101 -81384388 - AluJb SINE Alu 0 337 1 1340 234 115 25 chr12 62898101 62898392 -81384097 - L2 LINE L2 -1151 2163 1808 2342 112 0 0 chr12 62898482 62898786 -81383703 - AluSx SINE Alu -8 304 1 2181 90 79 0 chr12 62898904 62899194 -81383295 + AluSp SINE Alu 1 313 0 279 0 0 0 chr12 62899194 62899225 -81383264 + (TA)n Simple_repeat Simple_repeat 2 32 0 246 208 0 0 chr12 62899256 62899309 -81383180 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 370 196 176 10 chr12 62899313 62899415 -81383074 - FLAM_A SINE Alu -14 119 1 497 296 102 64 chr12 62899540 62899593 -81382896 - L2 LINE L2 -1057 2257 2207 2377 106 0 0 chr12 62899593 62899895 -81382594 + AluSg SINE Alu 1 302 -8 497 296 102 64 chr12 62899895 62900109 -81382380 - L2 LINE L2 -1107 2207 1974 1719 179 98 22 chr12 62900109 62900477 -81382012 - MSTD LTR MaLR 0 396 1 497 296 102 64 chr12 62900477 62900522 -81381967 - L2 LINE L2 -1340 1974 1932 430 294 84 45 chr12 62901881 62902317 -81380172 + LTR33 LTR ERVL 15 520 -1 910 188 19 24 chr12 62903176 62903383 -81379106 + MER96B DNA MER1_type? 1 206 -211 1778 165 30 13 chr12 62904667 62904811 -81377678 + AluJo SINE Alu 1 141 -171 248 0 31 0 chr12 62904811 62904843 -81377646 + (GTGTG)n Simple_repeat Simple_repeat 3 35 0 1778 165 30 13 chr12 62904843 62905001 -81377488 + AluJo SINE Alu 141 308 -4 2356 74 0 0 chr12 62905003 62905314 -81377175 + AluY SINE Alu 1 311 0 2066 157 0 0 chr12 62905438 62905732 -81376757 + AluJo SINE Alu 6 299 -13 2153 103 45 0 chr12 62908743 62909034 -81373455 - AluSc SINE Alu -5 304 1 1031 187 31 31 chr12 62909111 62909336 -81373153 + Charlie1 DNA MER1_type 1 225 -2536 441 197 120 0 chr12 62909342 62909409 -81373080 + Charlie1 DNA MER1_type 2631 2689 -72 2451 81 0 0 chr12 62909409 62909704 -81372785 - AluSx SINE Alu -17 295 1 441 197 120 0 chr12 62909704 62909753 -81372736 + Charlie1 DNA MER1_type 2689 2761 0 736 147 85 0 chr12 62909813 62909942 -81372547 + FAM SINE Alu 18 157 -28 195 69 0 0 chr12 62909948 62909977 -81372512 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr12 62911063 62911084 -81371405 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 62913702 62913725 -81368764 + GC_rich Low_complexity Low_complexity 1 23 0 192 77 0 0 chr12 62913738 62913764 -81368725 + (CACCC)n Simple_repeat Simple_repeat 5 30 0 2206 89 14 3 chr12 62914515 62914806 -81367683 - AluSx SINE Alu -18 294 1 2021 118 3 26 chr12 62915528 62915834 -81366655 + AluSx SINE Alu 1 299 -13 944 136 45 132 chr12 62917742 62917913 -81364576 + ORSL DNA AcHobo 24 166 -109 2093 103 0 7 chr12 62917913 62918205 -81364284 + AluSg SINE Alu 1 290 -20 944 136 45 132 chr12 62918205 62918298 -81364191 + ORSL DNA AcHobo 166 265 -10 1396 176 153 0 chr12 62919692 62920044 -81362445 - AluJo SINE Alu 0 392 1 2236 72 10 3 chr12 62920049 62920342 -81362147 - AluY SINE Alu -15 296 2 615 217 127 6 chr12 62920370 62920536 -81361953 - MIR SINE MIR -44 218 33 321 221 78 0 chr12 62921076 62921153 -81361336 - MER91B DNA MER1_type -17 173 91 1143 143 0 11 chr12 62921157 62921353 -81361136 + AluSq SINE Alu 121 313 0 453 195 0 0 chr12 62921356 62921433 -81361056 - MER91B DNA MER1_type -113 77 1 2246 81 0 0 chr12 62924445 62924730 -81357759 + AluSx SINE Alu 24 308 -4 511 307 0 0 chr12 62925069 62925232 -81357257 - MER117 DNA MER1_type -33 164 2 274 331 180 20 chr12 62929485 62929790 -81352699 + L2 LINE L2 2881 3234 -79 2203 102 0 0 chr12 62931473 62931768 -81350721 - AluSq SINE Alu -18 295 1 249 296 217 9 chr12 62931770 62931885 -81350604 - L2 LINE L2 0 3272 3134 556 349 184 21 chr12 62932396 62932525 -81349964 + L2 LINE L2 1613 1720 -1594 2033 131 3 10 chr12 62932525 62932837 -81349652 - AluSg SINE Alu 0 310 1 556 349 184 21 chr12 62932837 62933406 -81349083 + L2 LINE L2 1720 2425 -889 673 174 78 0 chr12 62933414 62933529 -81348960 + AluJo/FLAM SINE Alu 2 125 -187 2310 75 0 0 chr12 62933531 62933826 -81348663 - AluY SINE Alu -16 295 1 2357 92 0 0 chr12 62933832 62934138 -81348351 - AluSp SINE Alu -7 306 1 1657 172 17 10 chr12 62936346 62936642 -81345847 - AluJo SINE Alu -14 298 1 242 299 0 0 chr12 62938316 62938383 -81344106 + L1ME LINE L1 5523 5589 -532 1698 158 24 21 chr12 62938385 62938676 -81343813 - AluJo SINE Alu -20 292 1 760 177 0 0 chr12 62938698 62938822 -81343667 + FLAM_A SINE Alu 1 124 -9 409 188 0 0 chr12 62938842 62938911 -81343578 - U6 snRNA snRNA 0 107 39 1723 132 14 25 chr12 62938911 62939192 -81343297 - AluJb SINE Alu -34 278 1 1173 173 105 102 chr12 62939194 62939489 -81343000 - AluJo SINE Alu -6 296 1 1981 106 0 7 chr12 62939498 62939781 -81342708 - AluSc SINE Alu -23 286 6 980 186 0 0 chr12 62939797 62939958 -81342531 + FRAM SINE Alu 1 156 -20 2347 261 112 32 chr12 62939974 62940268 -81342221 + L1MC4a LINE L1 6316 6585 -1223 2113 115 6 10 chr12 62940268 62940581 -81341908 + AluSx SINE Alu 1 312 0 2347 261 112 32 chr12 62940581 62941116 -81341373 + L1MC4a LINE L1 6585 7249 -559 1890 121 3 91 chr12 62941116 62941264 -81341225 + AluSx SINE Alu 1 112 -200 6261 63 34 48 chr12 62941264 62943122 -81339367 + SVA Other Other 1 1386 0 1890 121 3 91 chr12 62943122 62943297 -81339192 + AluSx SINE Alu 112 301 -11 2347 261 112 32 chr12 62943297 62943522 -81338967 + L1MC4a LINE L1 7249 7455 -353 1604 190 0 38 chr12 62943522 62943694 -81338795 - AluJo SINE Alu -8 304 148 1616 178 7 20 chr12 62943694 62943998 -81338491 - AluJb SINE Alu -10 302 3 1604 190 0 38 chr12 62943998 62944141 -81338348 - AluJo SINE Alu -164 148 1 1703 171 0 13 chr12 62944146 62944445 -81338044 - AluJo SINE Alu -15 297 3 2069 120 7 0 chr12 62944512 62944811 -81337678 + AluSq SINE Alu 1 301 -12 1244 220 44 10 chr12 62944824 62944968 -81337521 + AluJo SINE Alu 2 140 -172 2331 94 0 0 chr12 62944968 62945276 -81337213 + AluSq SINE Alu 1 308 -5 1244 220 44 10 chr12 62945276 62945427 -81337062 + AluJo SINE Alu 140 307 -5 182 313 8 86 chr12 62945980 62946108 -81336381 - L2 LINE L2 -12 3260 3143 2138 102 16 0 chr12 62946132 62946435 -81336054 + AluSc SINE Alu 1 308 -1 2095 121 7 0 chr12 62946438 62946743 -81335746 + AluSq SINE Alu 1 307 -6 2022 115 0 0 chr12 62946915 62947224 -81335265 - AluSg SINE Alu 0 309 1 2214 100 3 25 chr12 62947226 62947545 -81334944 - AluSx SINE Alu 0 312 1 1088 282 160 16 chr12 62947580 62947960 -81334529 + L2 LINE L2 2237 2561 -752 1750 129 13 33 chr12 62947960 62948125 -81334364 - AluSx SINE Alu -16 296 138 2147 117 0 7 chr12 62948125 62948432 -81334057 - AluSx SINE Alu -7 305 1 1750 129 13 33 chr12 62948432 62948568 -81333921 - AluSx SINE Alu -174 138 1 1088 282 160 16 chr12 62948568 62949115 -81333374 + L2 LINE L2 2561 3313 0 272 250 0 17 chr12 62949244 62949304 -81333185 + L2 LINE L2 3214 3272 0 2179 95 3 3 chr12 62950055 62950351 -81332138 - AluSg SINE Alu -14 296 1 2220 72 7 30 chr12 62950352 62950656 -81331833 - AluY SINE Alu -14 297 1 2371 88 0 0 chr12 62950662 62950968 -81331521 - AluSp SINE Alu -7 306 1 1622 163 17 10 chr12 62953177 62953465 -81329024 - AluJo SINE Alu -14 298 9 2018 90 38 7 chr12 62953507 62953796 -81328693 + AluSg SINE Alu 1 298 -12 971 87 24 0 chr12 62953807 62953934 -81328555 + AluSg SINE Alu 2 131 -179 4811 52 2 9 chr12 62953938 62954578 -81327911 + SVA Other Other 21 655 -731 6269 75 10 33 chr12 62954692 62956193 -81326296 + SVA Other Other 37 1386 0 1341 103 0 0 chr12 62956196 62956380 -81326109 + AluSg SINE Alu 129 312 0 2143 118 0 3 chr12 62956439 62956745 -81325744 + AluSx SINE Alu 1 305 -7 182 0 105 0 chr12 62956745 62956783 -81325706 + (TA)n Simple_repeat Simple_repeat 1 42 0 304 204 45 45 chr12 62956783 62956871 -81325618 - L1MCa LINE L1 -4361 2065 1978 2175 121 0 3 chr12 62957713 62958026 -81324463 + AluSx SINE Alu 1 312 0 1899 123 0 75 chr12 62958268 62958602 -81323887 - AluSg SINE Alu -1 309 1 1980 129 7 10 chr12 62958935 62959237 -81323252 + AluSx SINE Alu 1 301 -11 839 230 17 0 chr12 62959385 62959563 -81322926 - L1MC4 LINE L1 -1078 6964 6784 1643 132 35 35 chr12 62959579 62959889 -81322600 - AluSq SINE Alu -2 311 2 1875 123 34 7 chr12 62959900 62960192 -81322297 - AluSx SINE Alu -12 300 1 2080 114 7 3 chr12 62960203 62960502 -81321987 - AluSq SINE Alu -12 301 2 545 185 25 0 chr12 62960502 62960621 -81321868 - Charlie1 DNA MER1_type -744 2017 1896 697 245 104 67 chr12 62960637 62961013 -81321476 - MLT1H LTR MaLR -69 480 91 504 204 0 11 chr12 62961675 62961768 -81320721 + AluSp/q SINE Alu 159 250 -63 1232 149 0 18 chr12 62961768 62961990 -81320499 + AluSq SINE Alu 85 302 -11 485 274 96 43 chr12 62962050 62962128 -81320361 - MLT1H1 LTR MaLR 0 555 483 2039 128 3 0 chr12 62962128 62962425 -81320064 - AluSx SINE Alu -14 298 1 485 274 96 43 chr12 62962425 62962788 -81319701 - MLT1H1 LTR MaLR -72 483 26 1046 127 0 0 chr12 62963155 62963305 -81319184 + AluSx SINE Alu 5 154 -158 1051 91 0 0 chr12 62963594 62963726 -81318763 + AluSq/x SINE Alu 1 132 -181 2145 101 0 10 chr12 62963732 62964038 -81318451 + AluSc SINE Alu 2 304 -5 1786 138 0 33 chr12 62964047 62964351 -81318138 + AluJb SINE Alu 1 294 -18 1533 114 0 0 chr12 63165634 63165853 -81116636 - L1PA10 LINE L1 -115 6053 5835 1025 68 0 55 chr12 63165850 63165996 -81116493 - L1PA11 LINE L1 -252 5922 5785 * 186 294 15 15 chr12 63166327 63166395 -81116094 + MIR SINE MIR 182 249 -13 49 66 0 0 chr12 63167207 63167298 -81115191 + AT_rich Low_complexity Low_complexity 1 91 0 379 209 173 0 chr12 63167379 63167489 -81115000 - MER112 DNA MER1_type -115 145 17 1520 167 45 28 chr12 63167490 63167778 -81114711 - AluJb SINE Alu -18 294 2 283 320 33 8 chr12 63167888 63168010 -81114479 - L2 LINE L2 -452 2862 2738 216 0 0 0 chr12 63168033 63168057 -81114432 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1312 122 0 25 chr12 63168061 63168257 -81114232 - AluSg/x SINE Alu -37 273 83 44174 29 21 1 chr12 63168283 63174313 -81108176 - L1PA2 LINE L1 0 6155 2 758 256 26 43 chr12 63174329 63174559 -81107930 + MIR SINE MIR 26 251 -11 1205 239 24 39 chr12 63174637 63174972 -81107517 + L1ME1 LINE L1 5831 6160 -6 * 4674 143 27 30 chr12 63174971 63175810 -81106679 + L1MB3 LINE L1 5345 6181 -2 1977 119 65 0 chr12 63175840 63176118 -81106371 - AluSx SINE Alu -16 296 1 531 272 16 0 chr12 63176119 63176244 -81106245 - L2 LINE L2 -7 3306 3180 335 314 77 21 chr12 63176418 63176612 -81105877 + L2 LINE L2 3038 3242 -71 1278 230 62 40 chr12 63176869 63177269 -81105220 + MLT1I LTR MaLR 1 409 0 246 328 0 0 chr12 63177269 63177330 -81105159 + L2 LINE L2 3134 3194 -78 2211 98 13 13 chr12 63177510 63177817 -81104672 - AluSx SINE Alu -5 307 1 191 81 54 0 chr12 63178233 63178270 -81104219 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2122 113 0 0 chr12 63178299 63178610 -81103879 - AluSx SINE Alu 0 311 1 30 0 0 0 chr12 63178612 63178642 -81103847 + AT_rich Low_complexity Low_complexity 1 30 0 818 147 0 9 chr12 63178642 63178758 -81103731 - FLAM_A SINE Alu -18 115 1 1717 143 15 0 chr12 63179388 63179647 -81102842 - AluSx SINE Alu -49 263 1 2273 101 3 0 chr12 63179660 63179947 -81102542 - AluSg SINE Alu -22 288 1 2260 116 0 16 chr12 63180406 63180717 -81101772 - AluSg SINE Alu -4 306 1 2396 77 0 17 chr12 63180942 63181242 -81101247 + AluSp SINE Alu 1 295 -18 1890 178 0 13 chr12 63181685 63181983 -81100506 - AluSx SINE Alu -18 294 1 1751 192 26 3 chr12 63182100 63182443 -81100046 - L1MB7 LINE L1 -3 6181 5831 288 310 35 9 chr12 63182480 63182596 -81099893 + Charlie8 DNA MER1_type 155 273 -2144 675 232 17 45 chr12 63182674 63182714 -81099775 - MER5B DNA MER1_type -5 173 133 1579 149 0 0 chr12 63182714 63182949 -81099540 + MER46A DNA MER2_type 1 235 -1 675 232 17 45 chr12 63182949 63183085 -81099404 - MER5B DNA MER1_type -45 133 2 29 28 0 0 chr12 63183818 63183854 -81098635 + AT_rich Low_complexity Low_complexity 1 36 0 404 241 0 117 chr12 63185182 63185344 -81097145 + MIR3 SINE MIR 54 196 -12 2259 92 0 0 chr12 63186428 63186767 -81095722 + AluSg SINE Alu 1 339 0 31 26 0 0 chr12 63186770 63186808 -81095681 + AT_rich Low_complexity Low_complexity 1 38 0 388 295 145 5 chr12 63186822 63187022 -81095467 + MIR SINE MIR 14 241 -21 2284 81 7 7 chr12 63187170 63187468 -81095021 - AluSq SINE Alu -13 300 3 698 157 17 0 chr12 63187470 63187585 -81094904 - AluJo SINE Alu -175 137 21 2315 107 0 3 chr12 63187595 63187905 -81094584 - AluSx SINE Alu -3 309 1 5500 148 26 13 chr12 63187905 63189731 -81092758 - L1PB1 LINE L1 -178 5973 4126 2111 157 58 2 chr12 63189725 63190121 -81092368 - L1MB7 LINE L1 -349 5829 5412 * 1377 200 52 7 chr12 63190121 63190411 -81092078 + MER58B DNA MER1_type 38 340 -1 180 0 0 0 chr12 63190500 63190520 -81091969 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 190 307 185 67 chr12 63190586 63190824 -81091665 + L2 LINE L2 2595 2860 -454 1490 186 17 20 chr12 63190878 63191179 -81091310 - AluJb SINE Alu -11 301 2 1177 131 27 0 chr12 63191187 63191370 -81091119 - AluSg/x SINE Alu -10 300 113 2148 109 0 3 chr12 63192028 63192335 -81090154 + AluSx SINE Alu 1 306 0 563 231 97 28 chr12 63192351 63192513 -81089976 - MIR SINE MIR -63 145 2 292 310 69 39 chr12 63192826 63193029 -81089460 + MIR SINE MIR 54 262 0 573 243 87 32 chr12 63193249 63193628 -81088861 - MER113 DNA MER1_type? 0 521 78 2200 118 7 3 chr12 63194414 63194720 -81087769 - AluSq SINE Alu -6 307 1 806 155 0 16 chr12 63194728 63194857 -81087632 - FLAM_C SINE Alu -16 127 1 324 261 136 0 chr12 63195291 63195379 -81087110 + MER81 DNA DNA 1 100 -14 189 319 21 32 chr12 63195532 63195626 -81086863 + L3b LINE CR1 1114 1206 -377 1702 134 95 48 chr12 63195845 63195925 -81086564 - THE1C LTR MaLR 0 375 300 4919 72 50 29 chr12 63195925 63196578 -81085911 - PABL_B LTR ERV1 0 667 1 1702 134 95 48 chr12 63196578 63196855 -81085634 - THE1C LTR MaLR -75 300 1 216 348 98 24 chr12 63197503 63197667 -81084822 + L2 LINE L2 2933 3108 -164 802 183 100 6 chr12 63197677 63197857 -81084632 + MER3 DNA MER1_type 13 209 0 386 269 80 17 chr12 63197704 63197879 -81084610 - MER3 DNA MER1_type 0 209 24 * 189 333 86 29 chr12 63197891 63197996 -81084493 - L2 LINE L2 -7 3265 3155 9845 62 18 5 chr12 63198331 63200319 -81082170 + L1PA7 LINE L1 4152 6154 0 2069 158 74 29 chr12 63200648 63201027 -81081462 - MSTD LTR MaLR 0 396 1 1948 165 73 3 chr12 63201027 63201384 -81081105 - MSTD-int LTR MaLR 0 1735 1354 1115 211 0 0 chr12 63201393 63201611 -81080878 - MSTD-int LTR MaLR -1513 222 5 723 171 16 0 chr12 63201645 63201774 -81080715 - MLT2B3 LTR ERVL -423 131 1 252 188 59 10 chr12 63201814 63201915 -81080574 + (TA)n Simple_repeat Simple_repeat 1 106 0 265 237 62 37 chr12 63202284 63202419 -81080070 + MIR SINE MIR 92 226 -36 1061 247 40 35 chr12 63202675 63203051 -81079438 - L1M4 LINE L1 -3543 2603 2226 342 256 186 0 chr12 63203112 63203284 -81079205 - L1MC5 LINE L1 -510 7451 7248 891 158 47 64 chr12 63203295 63203471 -81079018 - L1MC5 LINE L1 -751 7210 7037 2220 105 0 19 chr12 63203471 63203786 -81078703 - AluSc SINE Alu 0 309 1 891 158 47 64 chr12 63203786 63203843 -81078646 - L1MC5 LINE L1 -924 7037 6981 288 157 12 48 chr12 63204048 63204131 -81078358 + CT-rich Low_complexity Low_complexity 1 80 0 2052 90 8 0 chr12 63204150 63204416 -81078073 - AluSx SINE Alu -44 268 1 1144 216 118 16 chr12 63205951 63206391 -81076098 - Charlie2 DNA MER1_type -1 2861 2377 23 33 0 0 chr12 63206403 63206433 -81076056 + AT_rich Low_complexity Low_complexity 1 30 0 2090 104 10 3 chr12 63206438 63206727 -81075762 + AluSx SINE Alu 1 291 -21 182 88 0 29 chr12 63206853 63206887 -81075602 + (ATG)n Simple_repeat Simple_repeat 2 34 0 773 195 0 0 chr12 63206898 63207016 -81075473 - FLAM_A SINE Alu -13 120 3 368 238 133 0 chr12 63207440 63207545 -81074944 - L2 LINE L2 -1 3312 3194 264 337 11 11 chr12 63207665 63207754 -81074735 - L2 LINE L2 -28 3285 3197 187 250 0 26 chr12 63209289 63209365 -81073124 + A-rich Low_complexity Low_complexity 3 76 0 194 271 0 0 chr12 63209619 63209667 -81072822 + L3 LINE CR1 627 674 -903 198 296 0 19 chr12 63209928 63209982 -81072507 - L2 LINE L2 -86 3186 3134 2220 92 6 22 chr12 63210293 63210607 -81071882 - AluSq SINE Alu -3 310 2 544 239 174 0 chr12 63210615 63210770 -81071719 + MER5A DNA MER1_type 5 186 -3 654 144 17 34 chr12 63210797 63210915 -81071574 + Charlie4a DNA MER1_type 39 154 -354 * 738 200 83 46 chr12 63210893 63211133 -81071356 + Charlie4a DNA MER1_type 259 507 -1 1814 137 10 17 chr12 63212234 63212526 -81069963 - AluSx SINE Alu -22 290 1 959 341 85 24 chr12 63212559 63213384 -81069105 + L2 LINE L2 2228 3093 -179 1999 108 77 0 chr12 63213408 63213695 -81068794 - AluSg SINE Alu 0 310 2 3854 39 2 0 chr12 63213695 63214131 -81068358 + L1PA5 LINE L1 5718 6154 0 634 238 25 62 chr12 63214277 63214517 -81067972 + L1MC5 LINE L1 6994 7224 -737 1819 148 40 14 chr12 63214544 63214841 -81067648 + AluJb SINE Alu 1 305 -7 282 327 36 30 chr12 63214851 63215019 -81067470 + L1MC4a LINE L1 7244 7412 -396 2064 119 0 3 chr12 63215040 63215362 -81067127 + AluSx SINE Alu 1 321 0 2262 123 31 0 chr12 63215375 63215725 -81066764 + L1MB4 LINE L1 5807 6167 -13 267 254 0 0 chr12 63215777 63215844 -81066645 + L1MC5 LINE L1 7806 7872 -89 2024 121 0 0 chr12 63215844 63216281 -81066208 - AluSx SINE Alu 0 447 11 1565 190 19 32 chr12 63216293 63216609 -81065880 - AluJo SINE Alu 0 312 1 2562 69 0 0 chr12 63216674 63216978 -81065511 - AluY SINE Alu -7 304 1 268 277 34 101 chr12 63217715 63217778 -81064711 + MIR3 SINE MIR 58 111 -97 2323 87 3 0 chr12 63217778 63218076 -81064413 + AluSq SINE Alu 1 299 -14 268 277 34 101 chr12 63218076 63218131 -81064358 + MIR3 SINE MIR 111 168 -40 1963 123 13 20 chr12 63218361 63218662 -81063827 - AluSx SINE Alu -13 299 1 432 125 0 0 chr12 63218686 63218750 -81063739 + MER92C LTR ERV1 491 554 0 23 0 0 0 chr12 63218820 63218843 -81063646 + AT_rich Low_complexity Low_complexity 1 23 0 1697 147 0 41 chr12 63219693 63219886 -81062603 - AluJb SINE Alu 0 301 123 6414 49 34 3 chr12 63219886 63220642 -81061847 + LTR17 LTR ERV1 1 780 0 1697 147 0 41 chr12 63220642 63220761 -81061728 - AluJb SINE Alu -178 123 1 275 196 0 0 chr12 63220962 63221008 -81061481 + MIR SINE MIR 47 92 -170 791 167 212 6 chr12 63221008 63221378 -81061111 + LTR54B LTR ERV1 1 510 0 317 165 25 51 chr12 63221395 63221474 -81061015 + MIR SINE MIR 118 194 -68 1313 157 108 87 chr12 63221645 63221932 -81060557 - AluJo SINE Alu -9 293 1 282 245 60 92 chr12 63221941 63222125 -81060364 - L1MDa LINE L1 -3066 3474 3297 * 1830 174 65 79 chr12 63222110 63222281 -81060208 - L1MDa LINE L1 -4816 1724 1552 922 123 0 43 chr12 63222281 63222442 -81060047 - FLAM_C SINE Alu 0 133 2 1830 174 65 79 chr12 63222442 63222850 -81059639 - L1MDa LINE L1 -4988 1552 1153 814 102 0 9 chr12 63222979 63223087 -81059402 + FLAM_C SINE Alu 11 117 -26 422 108 0 46 chr12 63223994 63224059 -81058430 - AluJb SINE Alu -12 300 239 1042 136 11 60 chr12 63224060 63224244 -81058245 - AluJb SINE Alu -137 175 1 878 280 113 53 chr12 63224616 63225317 -81057172 - L2 LINE L2 -2 3311 2527 340 365 19 26 chr12 63225372 63225528 -81056961 - MER5A DNA MER1_type 0 189 35 567 215 9 0 chr12 63225719 63225826 -81056663 + AluJb SINE Alu 205 312 0 1336 135 10 5 chr12 63226404 63226604 -81055885 + AluSg/x SINE Alu 96 296 -16 2156 121 7 10 chr12 63226608 63226914 -81055575 + AluSx SINE Alu 3 307 -5 915 147 0 45 chr12 63227391 63227547 -81054942 + AluJo SINE Alu 1 149 -163 1200 225 9 0 chr12 63227569 63227791 -81054698 + MER58A DNA MER1_type 1 224 0 1723 157 37 13 chr12 63227810 63228110 -81054379 + AluJb SINE Alu 1 307 -5 2331 103 6 0 chr12 63228179 63228490 -81053999 + AluSp SINE Alu 1 313 0 1143 145 0 11 chr12 63228507 63228686 -81053803 + AluSp SINE Alu 131 307 -6 1407 145 10 0 chr12 63228839 63229046 -81053443 - AluSx SINE Alu -101 211 3 2317 107 0 16 chr12 63229161 63229470 -81053019 + AluSx SINE Alu 2 305 -7 515 282 286 30 chr12 63229528 63229988 -81052501 - L2 LINE L2 0 3313 2734 2182 101 0 25 chr12 63229995 63230313 -81052176 + AluSx SINE Alu 1 310 -2 908 184 0 0 chr12 63230423 63230575 -81051914 + FRAM SINE Alu 1 151 -25 36 23 0 0 chr12 63230647 63230690 -81051799 + AT_rich Low_complexity Low_complexity 1 43 0 342 159 32 0 chr12 63230787 63230850 -81051639 + AluS SINE Alu 2 66 -234 1320 148 0 14 chr12 63230963 63231172 -81051317 - AluJo SINE Alu -106 206 1 1646 157 61 4 chr12 63231179 63231341 -81051148 - AluJo SINE Alu -16 296 110 180 97 0 0 chr12 63231341 63231372 -81051117 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1646 157 61 4 chr12 63231372 63231489 -81051000 - AluJo SINE Alu -202 110 1 2319 84 0 23 chr12 63231540 63231848 -81050641 + AluSx SINE Alu 1 301 -11 263 267 118 37 chr12 63231850 63231985 -81050504 + L1MC5 LINE L1 7621 7766 -195 1151 165 0 0 chr12 63232548 63232718 -81049771 + AluSx SINE Alu 1 170 -142 189 261 23 45 chr12 63232883 63232971 -81049518 - L2 LINE L2 -663 2651 2566 27 108 0 0 chr12 63233609 63233720 -81048769 + AT_rich Low_complexity Low_complexity 1 111 0 1310 227 3 23 chr12 63233892 63234192 -81048297 - AluJo SINE Alu -16 296 3 733 188 16 0 chr12 63234203 63234331 -81048158 - FLAM_A SINE Alu -3 130 1 23 0 0 0 chr12 63235131 63235154 -81047335 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 63235230 63235255 -81047234 + GC_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr12 63235276 63235298 -81047191 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr12 63235914 63235935 -81046554 + AT_rich Low_complexity Low_complexity 1 21 0 223 309 74 0 chr12 63237000 63237081 -81045408 - MIR SINE MIR -70 192 106 212 155 12 36 chr12 63237621 63237705 -81044784 + (TA)n Simple_repeat Simple_repeat 2 83 0 215 250 0 0 chr12 63238136 63238188 -81044301 + T-rich Low_complexity Low_complexity 1 52 0 698 198 0 0 chr12 63238252 63238363 -81044126 + AluJb SINE Alu 2 112 -200 2409 54 20 0 chr12 63238409 63238707 -81043782 - AluY SINE Alu -7 304 1 2416 176 35 6 chr12 63238707 63239195 -81043294 - L1 LINE L1 -1441 4705 4204 232 267 0 0 chr12 63239575 63239635 -81042854 + MIR SINE MIR 165 224 -38 988 180 5 25 chr12 63239935 63240135 -81042354 + MER3 DNA MER1_type 9 204 -5 429 230 10 10 chr12 63240389 63240489 -81042000 + AluJ/FLAM SINE Alu 2 101 -211 678 207 0 0 chr12 63240649 63240760 -81041729 + AluJb SINE Alu 2 112 -200 1339 68 34 0 chr12 63240809 63240986 -81041503 - AluY SINE Alu -1 310 128 3139 153 50 114 chr12 63241547 63242382 -81040107 - L1MB2 LINE L1 0 6171 5390 1392 149 89 30 chr12 63242407 63242676 -81039813 - AluJo SINE Alu -27 285 1 2562 69 0 0 chr12 63242741 63243045 -81039444 - AluY SINE Alu -7 304 1 2110 122 10 0 chr12 63243438 63243734 -81038755 + AluSg SINE Alu 2 300 -10 1494 163 27 30 chr12 63243742 63244042 -81038447 + AluJb SINE Alu 2 300 -12 180 280 188 75 chr12 63244096 63244335 -81038154 - L2 LINE L2 -454 2860 2595 180 0 0 0 chr12 63244402 63244422 -81038067 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1407 201 52 3 chr12 63244512 63244801 -81037688 - MER58B DNA MER1_type -1 340 38 2111 157 58 2 chr12 63244801 63245197 -81037292 + L1MB8 LINE L1 5412 5829 -349 * 6264 146 24 15 chr12 63245191 63247015 -81035474 + L1PB1 LINE L1 4126 5968 -183 2249 99 0 0 chr12 63247015 63247341 -81035148 + AluSq SINE Alu 1 326 0 6264 146 24 15 chr12 63247341 63247527 -81034962 + L1PB1 LINE L1 5968 6151 0 1978 115 107 18 chr12 63247543 63247881 -81034608 + L1MB8 LINE L1 5811 6178 0 2151 162 28 17 chr12 63248334 63248693 -81033796 - MLT1A1 LTR MaLR 0 365 3 516 274 9 0 chr12 63248873 63248986 -81033503 - L2 LINE L2 -3 3310 3197 2115 126 0 17 chr12 63248986 63249288 -81033201 - AluSx SINE Alu -15 297 1 434 49 16 0 chr12 63249491 63249552 -81032937 + L1PA2 LINE L1 6088 6149 -6 828 167 15 8 chr12 63249620 63249800 -81032689 - FLAM_A SINE Alu 0 181 1 509 311 146 45 chr12 63249853 63250368 -81032121 + L2 LINE L2 2700 3257 -15 2415 100 0 0 chr12 63251738 63252048 -81030441 - AluY SINE Alu -1 310 1 1589 187 47 9 chr12 63252056 63252377 -81030112 + MER45B DNA AcHobo 467 799 -241 1173 119 58 58 chr12 63252377 63252670 -81029819 + SVA Other Other 27 319 -1067 1922 106 9 56 chr12 63252817 63253139 -81029350 - AluSx SINE Alu -5 307 1 516 275 113 52 chr12 63253142 63253371 -81029118 - MIR SINE MIR -18 244 2 1773 181 0 13 chr12 63255290 63255588 -81026901 - AluSx SINE Alu -18 294 1 1820 190 14 3 chr12 63255705 63256052 -81026437 - L1MB7 LINE L1 -3 6181 5831 288 310 35 9 chr12 63256089 63256205 -81026284 + Charlie8 DNA MER1_type 144 262 -2155 675 232 17 45 chr12 63256283 63256323 -81026166 - MER5B DNA MER1_type -5 173 133 1579 149 0 0 chr12 63256323 63256558 -81025931 + MER46A DNA MER2_type 1 235 -1 675 232 17 45 chr12 63256558 63256694 -81025795 - MER5B DNA MER1_type -45 133 2 29 28 0 0 chr12 63257426 63257462 -81025027 + AT_rich Low_complexity Low_complexity 1 36 0 404 241 0 117 chr12 63258790 63258952 -81023537 + MIR3 SINE MIR 54 196 -12 2189 91 0 7 chr12 63260036 63260361 -81022128 + AluSg SINE Alu 1 323 0 1881 125 12 35 chr12 63260371 63260690 -81021799 + AluSx SINE Alu 1 312 0 41 58 0 0 chr12 63260690 63260759 -81021730 + AT_rich Low_complexity Low_complexity 1 69 0 412 299 139 5 chr12 63260773 63260974 -81021515 + MIR SINE MIR 14 241 -21 652 89 22 0 chr12 63262299 63262389 -81020100 - L1PB2 LINE L1 -7 6144 6053 288 157 12 48 chr12 63262692 63262775 -81019714 + CT-rich Low_complexity Low_complexity 1 80 0 2052 90 8 0 chr12 63262794 63263060 -81019429 - AluSx SINE Alu -44 268 1 16735 125 8 13 chr12 63264251 63264974 -81017515 - L1PA10 LINE L1 -128 7459 6734 2020 135 4 0 chr12 63264974 63265296 -81017193 - AluSx SINE Alu 0 323 1 16735 125 8 13 chr12 63265296 63268548 -81013941 - L1PA10 LINE L1 -853 6734 3490 2343 86 10 7 chr12 63268720 63269023 -81013466 - AluY SINE Alu -7 304 1 396 173 27 13 chr12 63269072 63269147 -81013342 - LTR67 LTR ERVL 0 557 482 808 290 128 17 chr12 63269163 63269577 -81012912 + HAL1 LINE L1 3 462 -2045 506 143 0 60 chr12 63269577 63269661 -81012828 - MER1B DNA MER1_type 0 339 261 * 962 146 85 0 chr12 63269656 63269821 -81012668 - MER1B DNA MER1_type -73 224 46 2273 164 29 42 chr12 63269833 63270314 -81012175 - L1MB8 LINE L1 -5 6173 5699 1596 220 38 25 chr12 63270335 63270813 -81011676 + HAL1 LINE L1 807 1290 -1217 474 233 129 49 chr12 63270888 63271225 -81011264 + HAL1 LINE L1 1249 2065 -442 972 261 138 41 chr12 63271689 63272153 -81010336 + HAL1 LINE L1 1582 2090 -417 309 287 14 50 chr12 63272153 63272352 -81010137 - MLT1I LTR MaLR 0 409 264 1673 159 3 53 chr12 63272435 63272590 -81009899 - AluJo SINE Alu -24 288 127 216 0 0 0 chr12 63272590 63272614 -81009875 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 2110 121 3 0 chr12 63272614 63272896 -81009593 - AluSq SINE Alu -30 283 1 1673 159 3 53 chr12 63272896 63273041 -81009448 - AluJo SINE Alu -183 129 2 226 220 34 34 chr12 63273063 63273122 -81009367 - MLT1J2 LTR MaLR -294 156 98 1843 105 0 0 chr12 63273293 63273531 -81008958 - AluSg SINE Alu -15 295 58 546 165 10 31 chr12 63273898 63273995 -81008494 - AluJ/FLAM SINE Alu -216 96 2 462 206 246 0 chr12 63274176 63274302 -81008187 + MLT1J2 LTR MaLR 280 436 -14 180 320 80 0 chr12 63274315 63274390 -81008099 - MIR SINE MIR -171 91 11 181 308 90 0 chr12 63275406 63275484 -81007005 - L2 LINE L2 -2 3311 3227 514 167 254 8 chr12 63275526 63275652 -81006837 - MLT1J2 LTR MaLR -14 436 280 433 266 117 63 chr12 63275921 63276143 -81006346 + MIR SINE MIR 11 244 -18 2022 113 0 55 chr12 63276146 63276474 -81006015 + AluSx SINE Alu 1 310 -2 24 67 0 0 chr12 63276474 63276519 -81005970 + AT_rich Low_complexity Low_complexity 1 45 0 964 285 106 64 chr12 63276550 63277207 -81005282 + L2 LINE L2 2005 2699 -615 4118 156 39 12 chr12 63277207 63277927 -81004562 - L1MB2 LINE L1 -7 6164 5426 964 285 106 64 chr12 63277927 63278021 -81004468 + L2 LINE L2 2699 2788 -526 1236 118 0 0 chr12 63278021 63278191 -81004298 - AluSg/x SINE Alu -13 299 130 527 305 70 92 chr12 63278208 63278667 -81003822 + L2 LINE L2 2804 3252 -61 590 236 170 5 chr12 63279149 63279361 -81003128 + MIR SINE MIR 13 259 -3 904 278 103 40 chr12 63279875 63280372 -81002117 + L1ME4a LINE L1 5516 6043 -78 1465 172 57 44 chr12 63280548 63280844 -81001645 - AluJo SINE Alu -4 308 9 322 326 12 41 chr12 63281770 63281942 -81000547 + LTR67 LTR ERVL 59 225 -332 315 286 0 31 chr12 63281994 63282092 -81000397 + LTR67 LTR ERVL 356 450 -107 1001 255 101 28 chr12 63282378 63282774 -80999715 + L1ME3A LINE L1 5736 6160 -2 2106 125 6 13 chr12 63282922 63283234 -80999255 + AluSx SINE Alu 1 310 -2 2299 84 47 0 chr12 63286375 63286673 -80995816 + AluSx SINE Alu 1 312 0 203 324 149 62 chr12 63286818 63287264 -80995225 + L3 LINE CR1 153 651 -926 189 0 0 0 chr12 63287264 63287285 -80995204 + (CAA)n Simple_repeat Simple_repeat 1 21 0 203 324 149 62 chr12 63287285 63287354 -80995135 + L3 LINE CR1 651 713 -864 794 165 0 23 chr12 63287724 63287857 -80994632 - FLAM_A SINE Alu -2 131 2 1453 136 12 130 chr12 63289518 63289842 -80992647 - AluJo SINE Alu -18 294 9 2324 72 0 0 chr12 63289941 63290220 -80992269 - AluSg SINE Alu -31 279 1 6907 14 0 1 chr12 63290237 63290974 -80991515 - L1PA2 LINE L1 0 6155 5420 8997 22 0 1 chr12 63290974 63292059 -80990430 + L1P LINE L1 4346 5429 -726 192 57 86 0 chr12 63292149 63292184 -80990305 - L2 LINE L2 0 3313 3276 1650 245 83 43 chr12 63292249 63292908 -80989581 + MER20B DNA MER1_type 1 693 -90 916 151 48 48 chr12 63292908 63293074 -80989415 + FRAM SINE Alu 1 166 0 1650 245 83 43 chr12 63293074 63293136 -80989353 + MER20B DNA MER1_type 693 751 -32 2040 154 35 30 chr12 63293139 63293535 -80988954 + L1MB2 LINE L1 5744 6141 -30 36 0 0 0 chr12 63293535 63293571 -80988918 + AT_rich Low_complexity Low_complexity 1 36 0 292 275 101 18 chr12 63293749 63293858 -80988631 + L2 LINE L2 3194 3311 -2 2086 127 0 17 chr12 63294240 63294540 -80987949 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 63294542 63294570 -80987919 + AT_rich Low_complexity Low_complexity 1 28 0 858 189 0 0 chr12 63295151 63295294 -80987195 - FRAM SINE Alu -26 150 8 3287 86 42 5 chr12 63295300 63295728 -80986761 + MLT2A1 LTR ERVL 1 444 0 44819 61 19 12 chr12 63295728 63297086 -80985403 + HERVL-A1-A1 LTR ERVL 1 1348 -4306 2399 91 0 0 chr12 63297086 63297382 -80985107 - AluY SINE Alu -15 296 1 44819 61 19 12 chr12 63297382 63299338 -80983151 + HERVL-A1-A1 LTR ERVL 1348 3288 -2366 2134 121 3 0 chr12 63299338 63299627 -80982862 - AluSg SINE Alu -20 290 1 44819 61 19 12 chr12 63299627 63301513 -80980976 + HERVL-A1-A1 LTR ERVL 3288 5247 -407 297 0 0 0 chr12 63301513 63301546 -80980943 + (CAA)n Simple_repeat Simple_repeat 2 34 0 44819 61 19 12 chr12 63301546 63301957 -80980532 + HERVL-A1-A1 LTR ERVL 5247 5654 0 3295 86 16 5 chr12 63301957 63302388 -80980101 + MLT2A1 LTR ERVL 1 436 -8 816 181 8 0 chr12 63302412 63302539 -80979950 - FLAM_C SINE Alu -5 128 1 550 159 0 11 chr12 63302826 63302914 -80979575 + Tigger7 DNA MER2_type 2405 2491 0 282 246 53 47 chr12 63304079 63304250 -80978239 - L1ME4a LINE L1 0 6121 5950 228 278 8 32 chr12 63304257 63304289 -80978200 + (TA)n Simple_repeat Simple_repeat 2 33 -91 2548 122 3 17 chr12 63304289 63304642 -80977847 - MER7A DNA MER2_type 0 346 1 228 278 8 32 chr12 63304642 63304735 -80977754 + (TA)n Simple_repeat Simple_repeat 33 124 0 309 176 59 0 chr12 63304859 63304927 -80977562 - L1ME4a LINE L1 -224 5897 5826 2585 191 24 2 chr12 63306259 63306750 -80975739 + L1MD2 LINE L1 5858 6359 0 708 134 0 50 chr12 63307454 63307573 -80974916 - FLAM_C SINE Alu -11 132 20 765 164 0 16 chr12 63307711 63307833 -80974656 + FLAM_C SINE Alu 2 121 -22 396 0 0 0 chr12 63307833 63307877 -80974612 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 855 197 7 0 chr12 63308162 63308304 -80974185 - FRAM SINE Alu -17 159 17 2152 119 0 0 chr12 63308610 63308903 -80973586 - AluSc SINE Alu -16 293 1 898 158 0 0 chr12 63309966 63310099 -80972390 + FLAM_C SINE Alu 1 133 0 1957 130 23 7 chr12 63310213 63310513 -80971976 + AluJo SINE Alu 1 305 -7 429 272 50 63 chr12 63310525 63310764 -80971725 + L1ME3A LINE L1 5 240 -5879 580 276 88 0 chr12 63311056 63311226 -80971263 + L1ME3A LINE L1 463 647 -5472 251 247 157 34 chr12 63311249 63311450 -80971039 + L1ME3A LINE L1 699 942 -5177 2299 114 7 0 chr12 63311450 63311758 -80970731 + AluSq SINE Alu 1 310 -3 251 247 157 34 chr12 63311758 63311823 -80970666 + L1ME3A LINE L1 942 998 -5121 284 271 66 0 chr12 63311828 63311950 -80970539 + L1ME3A LINE L1 2946 3075 -3054 * 993 256 119 50 chr12 63311926 63312514 -80969975 + L1ME3A LINE L1 4404 5036 -1093 * 4132 166 23 29 chr12 63312491 63312514 -80969975 + L1MB1 LINE L1 5328 5350 -818 1761 128 64 0 chr12 63312514 63312810 -80969679 + AluSx SINE Alu 1 313 0 4132 166 23 29 chr12 63312810 63312962 -80969527 + L1MB1 LINE L1 5350 5501 -667 1843 168 26 0 chr12 63312962 63313266 -80969223 + AluJb SINE Alu 1 312 0 4132 166 23 29 chr12 63313266 63313882 -80968607 + L1MB1 LINE L1 5501 6116 -52 643 279 30 8 chr12 63313908 63314170 -80968319 + L1ME3A LINE L1 5025 5292 -837 320 224 12 12 chr12 63314186 63314271 -80968218 + L1ME3A LINE L1 5268 5352 -801 1851 197 107 11 chr12 63314271 63314712 -80967777 + MER74A LTR ERVL 3 485 -73 826 263 132 51 chr12 63314716 63315187 -80967302 + L1ME3A LINE L1 5555 6063 -90 1882 148 3 28 chr12 63315232 63315549 -80966940 - AluJo SINE Alu -3 309 1 1827 173 0 3 chr12 63315755 63316044 -80966445 - AluJb SINE Alu -24 288 1 773 188 151 69 chr12 63316190 63316509 -80965980 + LTR37A LTR ERV1 82 426 0 2305 91 6 35 chr12 63316871 63317190 -80965299 + AluSq SINE Alu 1 310 -3 1412 130 61 0 chr12 63317866 63318096 -80964393 - L1MA4 LINE L1 -4 6296 6053 2368 98 0 0 chr12 63318098 63318395 -80964094 - AluSx SINE Alu -15 297 1 1084 175 0 0 chr12 63318395 63318566 -80963923 - FRAM SINE Alu -10 166 1 1253 125 10 0 chr12 63318566 63318766 -80963723 - L1MA4 LINE L1 -241 6059 5858 * 1449 99 5 5 chr12 63318764 63318977 -80963512 + L1MA4 LINE L1 5633 5845 -455 24 0 0 0 chr12 63319014 63319038 -80963451 + AT_rich Low_complexity Low_complexity 1 24 0 321 272 52 11 chr12 63323438 63323573 -80958916 - MIR SINE MIR -62 146 26 193 371 31 10 chr12 63324028 63324125 -80958364 + L2 LINE L2 2550 2648 -666 350 106 85 8 chr12 63324139 63324232 -80958257 - MER5B DNA MER1_type 0 178 1 201 351 85 0 chr12 63324928 63325022 -80957467 - MIR SINE MIR -75 187 86 673 191 0 0 chr12 63325377 63325487 -80957002 + FRAM SINE Alu 42 151 -25 1889 171 0 0 chr12 63325714 63326018 -80956471 - AluSx SINE Alu -8 304 1 21 0 0 0 chr12 63326100 63326121 -80956368 + AT_rich Low_complexity Low_complexity 1 21 0 2723 131 33 37 chr12 63326130 63326640 -80955849 + L1MB3 LINE L1 5675 6182 -1 399 213 118 30 chr12 63328004 63328173 -80954316 + L1ME4a LINE L1 5656 5839 -282 1882 128 25 7 chr12 63328239 63328521 -80953968 + AluJb SINE Alu 1 287 -25 778 160 30 18 chr12 63328525 63328694 -80953795 - L1MB8 LINE L1 0 6178 6008 2076 137 18 40 chr12 63328734 63329129 -80953360 + L1MB8 LINE L1 5784 6169 -9 578 88 0 0 chr12 63329267 63329347 -80953142 - MADE1 DNA Mariner 0 80 1 319 154 13 26 chr12 63329356 63329434 -80953055 + L1MC5 LINE L1 7620 7696 -265 281 248 14 78 chr12 63329475 63329616 -80952873 + L1ME4a LINE L1 5990 6121 0 222 37 0 0 chr12 63329889 63329916 -80952573 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 387 0 0 0 chr12 63330167 63330210 -80952279 + (CA)n Simple_repeat Simple_repeat 1 43 0 622 263 118 48 chr12 63331390 63331618 -80950871 - MIR SINE MIR -9 253 10 1060 219 26 18 chr12 63332200 63332428 -80950061 - MIR SINE MIR -17 245 16 1562 135 4 0 chr12 63332826 63333056 -80949433 - AluSg/x SINE Alu -6 304 74 28 48 0 0 chr12 63334897 63334939 -80947550 + AT_rich Low_complexity Low_complexity 1 42 0 303 284 20 47 chr12 63335484 63335602 -80946887 - MIR SINE MIR -67 141 24 797 177 6 6 chr12 63335624 63335782 -80946707 + L1MA3 LINE L1 6148 6305 0 21 0 0 0 chr12 63338255 63338276 -80944213 + AT_rich Low_complexity Low_complexity 1 21 0 450 53 0 0 chr12 63339008 63339065 -80943424 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1873 154 10 10 chr12 63340672 63340965 -80941524 - AluJo SINE Alu -19 293 1 2463 194 44 15 chr12 63341999 63342541 -80939948 - MER74A LTR ERVL 0 558 1 2302 90 10 6 chr12 63343759 63344070 -80938419 - AluSx SINE Alu 0 312 1 320 333 35 10 chr12 63345899 63346097 -80936392 - L2 LINE L2 -977 2337 2135 704 283 43 30 chr12 63346212 63346445 -80936044 - MIR SINE MIR -24 238 3 41 66 0 0 chr12 63346590 63346666 -80935823 + AT_rich Low_complexity Low_complexity 1 76 0 2119 117 13 3 chr12 63348774 63349074 -80933415 + AluSq SINE Alu 1 303 -10 189 0 0 0 chr12 63349500 63349521 -80932968 + (A)n Simple_repeat Simple_repeat 1 21 0 991 265 71 20 chr12 63349602 63350022 -80932467 - L1MC4 LINE L1 0 8042 7507 212 217 349 9 chr12 63350491 63350597 -80931892 + MIR SINE MIR 118 259 -3 26 0 0 49 chr12 63351251 63351266 -80931223 + AT_rich Low_complexity Low_complexity 1 15 -24 2338 91 0 0 chr12 63351266 63351562 -80930927 - AluSq SINE Alu -17 296 1 26 0 0 49 chr12 63351562 63351587 -80930902 + AT_rich Low_complexity Low_complexity 15 39 0 423 313 117 6 chr12 63351657 63351820 -80930669 + MER5A DNA MER1_type 9 189 0 852 223 0 18 chr12 63351832 63351998 -80930491 - AluSg/x SINE Alu -25 285 123 213 146 0 0 chr12 63351999 63352047 -80930442 + (TA)n Simple_repeat Simple_repeat 1 48 0 814 148 8 0 chr12 63352047 63352175 -80930314 - AluJb SINE Alu -183 129 1 191 61 30 0 chr12 63352200 63352233 -80930256 + (CTAA)n Simple_repeat Simple_repeat 1 34 0 297 290 54 32 chr12 63352241 63352334 -80930155 + MER5A DNA MER1_type 71 165 -24 212 244 0 0 chr12 63352692 63352737 -80929752 - L2 LINE L2 -87 3185 3141 811 229 108 48 chr12 63352872 63353187 -80929302 - L1ME3A LINE L1 -3 6150 5817 1086 232 97 18 chr12 63353200 63353854 -80928635 - L1ME3A LINE L1 -372 5781 5015 43 56 0 0 chr12 63354014 63354085 -80928404 + AT_rich Low_complexity Low_complexity 1 71 0 447 279 85 52 chr12 63354191 63354580 -80927909 - L1MEd LINE L1 -4729 1581 1206 2167 100 14 0 chr12 63354580 63354869 -80927620 + AluSx SINE Alu 1 293 -19 447 279 85 52 chr12 63354869 63355297 -80927192 - L1MEd LINE L1 -5104 1206 715 3847 86 2 4 chr12 63356001 63356513 -80925976 + MER9 LTR ERVK 1 511 0 26 30 0 0 chr12 63356709 63356742 -80925747 + AT_rich Low_complexity Low_complexity 1 33 0 295 302 169 6 chr12 63356873 63357045 -80925444 - L2 LINE L2 -209 3063 2864 21 36 0 0 chr12 63357109 63357137 -80925352 + AT_rich Low_complexity Low_complexity 1 28 0 215 387 117 0 chr12 63357204 63357341 -80925148 - L2 LINE L2 -601 2713 2561 1298 211 109 3 chr12 63357751 63358054 -80924435 - MER2 DNA MER2_type -10 335 1 1529 145 82 110 chr12 63358746 63359147 -80923342 - MLT1B LTR MaLR 0 390 1 360 0 0 0 chr12 63359374 63359414 -80923075 + (CA)n Simple_repeat Simple_repeat 1 40 0 286 393 52 0 chr12 63359983 63360118 -80922371 + L2 LINE L2 3126 3267 -5 843 129 43 0 chr12 63361489 63361628 -80920861 + AluJo SINE Alu 1 145 -167 865 110 55 0 chr12 63361734 63361861 -80920628 + AluJb SINE Alu 168 301 -11 389 303 0 16 chr12 63362273 63362395 -80920094 - MER102b DNA MER1_type 0 341 222 28 29 0 0 chr12 63362459 63362494 -80919995 + AT_rich Low_complexity Low_complexity 1 35 0 1924 111 4 4 chr12 63362500 63362761 -80919728 - AluSx SINE Alu -17 295 35 511 204 0 0 chr12 63362858 63362951 -80919538 - FRAM SINE Alu -15 161 69 30 0 0 0 chr12 63363345 63363375 -80919114 + AT_rich Low_complexity Low_complexity 1 30 0 639 148 26 17 chr12 63363375 63363490 -80918999 - FRAM SINE Alu -25 151 36 286 255 0 66 chr12 63363595 63363701 -80918788 - MER102b DNA MER1_type -1 340 242 260 330 39 10 chr12 63364399 63364502 -80917987 + MLT1K LTR MaLR 150 255 -333 291 253 61 30 chr12 63364575 63364674 -80917815 + MLT1K LTR MaLR 375 476 -112 248 247 0 24 chr12 63364956 63365041 -80917448 - L1ME4a LINE L1 -1 6120 6038 758 151 0 24 chr12 63365079 63365205 -80917284 + FLAM_C SINE Alu 1 123 -20 760 286 68 0 chr12 63366045 63366279 -80916210 + MIR SINE MIR 2 251 -11 191 152 22 0 chr12 63366825 63366871 -80915618 + (TA)n Simple_repeat Simple_repeat 2 48 0 872 195 26 0 chr12 63367891 63368081 -80914408 + L1MB8 LINE L1 4969 5163 -983 1234 144 5 5 chr12 63368082 63368276 -80914213 + AluSg/x SINE Alu 108 301 -11 4617 163 28 16 chr12 63368277 63369265 -80913224 + L1MB8 LINE L1 5178 6176 -2 230 295 0 85 chr12 63369827 63369956 -80912533 - L2 LINE L2 0 3313 3196 292 224 17 0 chr12 63370218 63370276 -80912213 + MER5A DNA MER1_type 10 68 -121 1823 182 3 6 chr12 63370284 63370597 -80911892 + AluJb SINE Alu 1 312 0 267 133 0 0 chr12 63370597 63370642 -80911847 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 248 260 250 10 chr12 63370654 63370758 -80911731 + MER5A DNA MER1_type 61 189 0 436 200 11 11 chr12 63372404 63372494 -80909995 - Tigger5 DNA MER2_type 0 2323 2234 349 181 14 14 chr12 63372545 63372617 -80909872 - Tigger5 DNA MER2_type -1 2322 2251 298 208 0 0 chr12 63372588 63372641 -80909848 - Tigger5 DNA MER2_type -2270 53 1 * 1349 288 161 38 chr12 63373789 63374212 -80908277 - L2 LINE L2 -121 3192 2823 1510 156 13 0 chr12 63374212 63374443 -80908046 - AluSg/x SINE Alu 0 310 77 1349 288 161 38 chr12 63374443 63375073 -80907416 - L2 LINE L2 -490 2823 2013 5636 26 0 0 chr12 63375112 63375807 -80906682 - L1P LINE L1 -1330 4816 4122 2151 24 0 0 chr12 63375807 63376055 -80906434 + L1PA2 LINE L1 5906 6155 0 1016 215 37 5 chr12 63377398 63377612 -80904877 + MER58A DNA MER1_type 4 224 0 21 36 0 0 chr12 63377748 63377776 -80904713 + AT_rich Low_complexity Low_complexity 1 28 0 2262 103 3 7 chr12 63378216 63378518 -80903971 - AluSq SINE Alu -10 303 3 261 128 0 0 chr12 63378984 63379031 -80903458 + (GA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr12 63379096 63379117 -80903372 + AT_rich Low_complexity Low_complexity 1 21 0 359 289 84 17 chr12 63379606 63379768 -80902721 + L1MC5 LINE L1 7311 7496 -465 2182 92 11 7 chr12 63379768 63380077 -80902412 + AluSx SINE Alu 1 310 0 359 289 84 17 chr12 63380077 63380152 -80902337 + L1MC5 LINE L1 7496 7565 -396 6116 141 25 30 chr12 63380391 63381144 -80901345 + L1MA3 LINE L1 4122 4877 -1428 2667 100 14 0 chr12 63381144 63381514 -80900975 + THE1C LTR MaLR 1 375 0 6116 141 25 30 chr12 63381514 63382953 -80899536 + L1MA3 LINE L1 4877 6304 -1 450 234 156 83 chr12 63383765 63383970 -80898519 + MIR SINE MIR 32 251 -11 1456 289 81 51 chr12 63384048 63385008 -80897481 + L2 LINE L2 2295 3298 -15 2208 117 0 13 chr12 63385053 63385353 -80897136 + AluSg SINE Alu 1 296 -14 1996 151 7 0 chr12 63385809 63386114 -80896375 + AluSx SINE Alu 1 307 -5 193 200 18 55 chr12 63386493 63386548 -80895941 + L2 LINE L2 3220 3272 0 291 278 161 28 chr12 63386720 63386900 -80895589 + L2 LINE L2 3110 3313 0 191 61 30 0 chr12 63388557 63388590 -80893899 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2135 124 10 10 chr12 63388595 63388941 -80893548 + AluSx SINE Alu 1 312 0 260 246 0 0 chr12 63388946 63389015 -80893474 - L1ME4a LINE L1 -106 6015 5947 1544 157 11 25 chr12 63389103 63389432 -80893057 + AluJo SINE Alu 1 325 0 371 229 85 30 chr12 63389463 63389664 -80892825 - L1ME4a LINE L1 -197 5924 5713 293 229 36 12 chr12 63389861 63389944 -80892545 - L1ME4a LINE L1 -460 5661 5577 266 279 225 45 chr12 63390364 63390570 -80891919 - MARNA DNA Mariner -217 369 111 359 171 0 24 chr12 63390570 63390652 -80891837 - MER116 DNA Mariner 0 80 1 266 279 225 45 chr12 63390652 63390689 -80891800 - MARNA DNA Mariner -475 111 82 288 0 0 0 chr12 63391131 63391163 -80891326 + (CA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chr12 63392451 63392475 -80890014 + AT_rich Low_complexity Low_complexity 1 24 0 206 176 20 0 chr12 63392485 63392536 -80889953 + (TA)n Simple_repeat Simple_repeat 1 52 0 899 268 49 8 chr12 63392544 63392787 -80889702 - MIR SINE MIR -5 257 5 267 250 0 0 chr12 63393998 63394054 -80888435 - L2 LINE L2 0 3313 3258 364 294 87 24 chr12 63394719 63394845 -80887644 + MIR SINE MIR 22 155 -107 366 239 120 0 chr12 63395288 63395380 -80887109 - L2 LINE L2 0 3272 3170 234 91 0 0 chr12 63395716 63395749 -80886740 + (T)n Simple_repeat Simple_repeat 1 33 0 1009 201 28 16 chr12 63395944 63396198 -80886291 + MIR SINE MIR 3 259 -3 2430 114 89 5 chr12 63396321 63396716 -80885773 - MSTA LTR MaLR 0 428 1 2049 121 3 29 chr12 63396746 63397052 -80885437 - AluSg SINE Alu -12 298 1 2079 126 3 7 chr12 63397055 63397357 -80885132 - AluSx SINE Alu -11 301 1 469 156 0 0 chr12 63397792 63397882 -80884607 - L1MA6 LINE L1 0 6300 6211 1724 147 71 18 chr12 63398435 63398761 -80883728 + MER61A LTR ERV1 1 343 0 215 314 186 0 chr12 63398830 63398900 -80883589 + MIR SINE MIR 41 123 -85 247 315 74 9 chr12 63399235 63399343 -80883146 + L3 LINE CR1 1457 1571 -6 2389 100 0 0 chr12 63399455 63399756 -80882733 - AluSx SINE Alu -11 301 1 816 112 0 0 chr12 63400845 63400987 -80881502 - AluSx SINE Alu 0 318 177 674 90 0 0 chr12 63400987 63401076 -80881413 - AluSx SINE Alu -223 89 1 198 317 92 17 chr12 63401157 63401277 -80881212 + L2 LINE L2 2935 3063 -209 1956 148 3 3 chr12 63402097 63402388 -80880101 - AluSg SINE Alu -19 291 1 325 149 230 0 chr12 63402613 63402687 -80879802 - L2 LINE L2 0 3272 3182 540 205 0 17 chr12 63402705 63402822 -80879667 + FLAM_A SINE Alu 1 115 -18 2000 164 0 0 chr12 63402964 63403263 -80879226 - AluJb SINE Alu -13 299 1 1373 176 51 64 chr12 63404359 63404672 -80877817 - AluJo SINE Alu -3 309 1 1846 155 0 30 chr12 63404744 63405041 -80877448 - AluJb SINE Alu -24 288 1 446 304 95 0 chr12 63406282 63406430 -80876059 - MIR3 SINE MIR -3 205 44 203 219 0 0 chr12 63406500 63406541 -80875948 + MIR SINE MIR 189 229 -33 818 268 95 17 chr12 63406576 63406807 -80875682 + MIR SINE MIR 11 259 -3 260 307 80 6 chr12 63407696 63407872 -80874617 + LTR67 LTR ERVL 352 540 -17 576 200 91 114 chr12 63407917 63408137 -80874352 - MER58C DNA MER1_type 0 215 1 2371 100 0 6 chr12 63408239 63408550 -80873939 + AluSx SINE Alu 1 309 -3 4172 168 46 7 chr12 63408733 63409626 -80872863 - L1MB2 LINE L1 -62 6109 5182 1909 126 24 27 chr12 63411219 63411512 -80870977 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr12 63411608 63411638 -80870851 + AT_rich Low_complexity Low_complexity 1 30 0 906 303 143 22 chr12 63411684 63412090 -80870399 - LTR16A LTR ERVL 0 457 3 303 160 30 80 chr12 63412091 63412191 -80870298 + L1ME4a LINE L1 5992 6086 -35 265 280 0 50 chr12 63412225 63412325 -80870164 + MIR SINE MIR 165 259 -3 1025 156 5 20 chr12 63412588 63412787 -80869702 + MER3 DNA MER1_type 9 204 -5 2199 116 7 0 chr12 63413040 63413333 -80869156 + AluSx SINE Alu 1 295 -17 468 274 60 84 chr12 63413626 63413779 -80868710 + MIR SINE MIR 47 195 -67 801 177 0 0 chr12 63413779 63413909 -80868580 + FLAM_C SINE Alu 1 130 -3 468 274 60 84 chr12 63413909 63413970 -80868519 + MIR SINE MIR 195 256 -6 1689 163 7 21 chr12 63414138 63414421 -80868068 + AluJo SINE Alu 10 288 -24 2028 222 79 16 chr12 63414753 63415261 -80867228 + MLT1F LTR MaLR 1 540 -2 912 132 0 0 chr12 63415283 63415412 -80867077 + FLAM_C SINE Alu 2 130 -3 484 214 0 0 chr12 63415627 63415739 -80866750 + L1MA9 LINE L1 3412 3523 -2623 570 197 0 8 chr12 63415741 63415858 -80866631 + U5 snRNA snRNA 1 116 0 6144 173 93 23 chr12 63415891 63416431 -80866058 + L1MA9 LINE L1 3510 4010 -2302 1816 197 3 0 chr12 63416431 63416736 -80865753 + AluJo SINE Alu 3 308 -4 6144 173 93 23 chr12 63416736 63417231 -80865258 + L1MA9 LINE L1 4010 4469 -1843 2421 87 0 3 chr12 63417231 63417531 -80864958 - AluY SINE Alu -12 299 1 6144 173 93 23 chr12 63417531 63418343 -80864146 + L1MA9 LINE L1 4469 5222 -1090 824 143 15 15 chr12 63418343 63418476 -80864013 + FLAM_C SINE Alu 1 133 0 6144 173 93 23 chr12 63418476 63418955 -80863534 + L1MA9 LINE L1 5222 6014 -298 1480 120 23 5 chr12 63418990 63419207 -80863282 + L1PB2 LINE L1 5928 6148 -3 281 217 100 23 chr12 63419218 63419435 -80863054 - L1ME LINE L1 -650 5471 5214 956 42 68 0 chr12 63419442 63419560 -80862929 - L1PA7 LINE L1 -1 6153 6028 2270 91 3 16 chr12 63420026 63420335 -80862154 + AluSp SINE Alu 1 305 -8 1828 135 3 69 chr12 63420345 63420679 -80861810 + AluSx SINE Alu 1 312 0 1925 151 10 0 chr12 63421171 63421470 -80861019 + AluSx SINE Alu 1 302 -10 21 82 0 0 chr12 63423693 63423742 -80858747 + AT_rich Low_complexity Low_complexity 1 49 0 1197 118 5 86 chr12 63424613 63424834 -80857655 - L1MA9 LINE L1 0 6312 6110 23 0 0 0 chr12 63425368 63425391 -80857098 + AT_rich Low_complexity Low_complexity 1 23 0 249 269 74 46 chr12 63426003 63426111 -80856378 - MIR SINE MIR -64 144 34 645 99 0 0 chr12 63426380 63426461 -80856028 - MER30 DNA MER1_type 0 230 150 372 174 20 10 chr12 63426464 63426562 -80855927 + CT-rich Low_complexity Low_complexity 1 99 0 2320 103 6 6 chr12 63426586 63426898 -80855591 - AluSx SINE Alu 0 312 1 1085 175 0 0 chr12 63426898 63427069 -80855420 - FRAM SINE Alu -10 166 1 1284 125 10 0 chr12 63427069 63427269 -80855220 - L1MA4 LINE L1 -241 6059 5858 * 1495 99 5 5 chr12 63427267 63427480 -80855009 + L1MA4 LINE L1 5633 5845 -455 24 0 0 0 chr12 63427517 63427541 -80854948 + AT_rich Low_complexity Low_complexity 1 24 0 836 224 33 0 chr12 63431390 63431573 -80850916 + AluJb SINE Alu 120 308 -4 493 95 36 0 chr12 63431581 63431665 -80850824 + GA-rich Low_complexity Low_complexity 2 88 0 1740 163 22 21 chr12 63431672 63432068 -80850421 + L1MA9 LINE L1 4275 4669 -1643 2423 87 0 3 chr12 63432068 63432368 -80850121 - AluY SINE Alu -12 299 1 1740 163 22 21 chr12 63432368 63433179 -80849310 + L1MA9 LINE L1 4669 5537 -775 892 135 15 15 chr12 63433179 63433312 -80849177 + FLAM_C SINE Alu 1 133 0 1740 163 22 21 chr12 63433312 63433791 -80848698 + L1MA9 LINE L1 5537 6014 -298 1480 120 23 5 chr12 63433826 63434043 -80848446 + L1PB2 LINE L1 5928 6148 -3 276 220 61 20 chr12 63434056 63434273 -80848216 - L1ME LINE L1 -650 5471 5214 963 42 67 0 chr12 63434280 63434399 -80848090 - L1PA7 LINE L1 0 6154 6028 2218 91 3 19 chr12 63434869 63435177 -80847312 + AluSp SINE Alu 3 305 -8 1853 132 3 69 chr12 63435187 63435521 -80846968 + AluSx SINE Alu 1 312 0 2199 120 3 0 chr12 63436013 63436314 -80846175 + AluSx SINE Alu 1 302 -10 21 82 0 0 chr12 63438534 63438583 -80843906 + AT_rich Low_complexity Low_complexity 1 49 0 1197 118 5 86 chr12 63439454 63439675 -80842814 - L1MA9 LINE L1 0 6312 6110 23 0 0 0 chr12 63440209 63440232 -80842257 + AT_rich Low_complexity Low_complexity 1 23 0 249 269 74 46 chr12 63440841 63440949 -80841540 - MIR SINE MIR -64 144 34 645 99 0 0 chr12 63441218 63441299 -80841190 - MER30 DNA MER1_type 0 230 150 400 198 9 9 chr12 63441302 63441408 -80841081 + T-rich Low_complexity Low_complexity 4 109 0 2210 115 0 6 chr12 63441425 63441739 -80840750 - AluSx SINE Alu 0 312 1 1059 60 40 7 chr12 63441739 63441888 -80840601 - MER30 DNA MER1_type -76 154 1 419 132 7 276 chr12 63441956 63442108 -80840381 + MER81 DNA DNA 1 111 -3 1914 110 11 33 chr12 63443958 63444231 -80838258 - AluSx SINE Alu -45 267 1 1553 122 0 14 chr12 63444444 63444657 -80837832 - AluSg SINE Alu -100 210 1 535 264 277 38 chr12 63444755 63445069 -80837420 + L2 LINE L2 2925 3313 0 434 324 137 30 chr12 63445101 63445592 -80836897 - L2 LINE L2 -542 2772 2230 234 255 0 0 chr12 63445723 63445770 -80836719 - L2 LINE L2 -16 3256 3210 1807 168 10 3 chr12 63446138 63446447 -80836042 - AluJb SINE Alu -1 311 1 734 222 60 105 chr12 63446469 63446521 -80835968 - L1MC4 LINE L1 0 8042 7989 3119 128 39 64 chr12 63446521 63447113 -80835376 + L1MB8 LINE L1 5602 6178 0 734 222 60 105 chr12 63447113 63447430 -80835059 - L1MC4 LINE L1 -53 7989 7690 2140 115 10 10 chr12 63447622 63447918 -80834571 - AluSx SINE Alu -16 296 1 24 32 0 0 chr12 63447982 63448013 -80834476 + AT_rich Low_complexity Low_complexity 1 31 0 207 182 0 0 chr12 63448375 63448408 -80834081 + (TG)n Simple_repeat Simple_repeat 2 34 0 1503 199 0 4 chr12 63448466 63448742 -80833747 - AluJb SINE Alu -18 294 20 260 93 23 23 chr12 63448742 63448785 -80833704 - AluJb SINE Alu -260 43 1 2212 111 0 3 chr12 63449655 63449952 -80832537 - AluSq SINE Alu -17 296 1 30 77 0 0 chr12 63450017 63450082 -80832407 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr12 63450470 63450498 -80831991 + AT_rich Low_complexity Low_complexity 1 28 0 1933 125 4 0 chr12 63450945 63451217 -80831272 + AluSx SINE Alu 1 273 -39 254 235 209 26 chr12 63451701 63451816 -80830673 - MLT1H LTR MaLR -381 168 33 2436 160 27 7 chr12 63451880 63451928 -80830561 - L1MB2 LINE L1 0 6180 6134 1936 143 13 0 chr12 63451928 63452229 -80830260 - AluJb SINE Alu -6 306 2 2436 160 27 7 chr12 63452229 63452641 -80829848 - L1MB2 LINE L1 -46 6134 5718 182 263 66 53 chr12 63452648 63452724 -80829765 + L2 LINE L2 3008 3084 -188 273 116 0 0 chr12 63452905 63452948 -80829541 - L1MB4 LINE L1 -2 6178 6136 * 456 165 7 7 chr12 63452918 63453012 -80829477 + L1PA8A LINE L1 6026 6098 -33 985 219 17 13 chr12 63453034 63453267 -80829222 + AluJo SINE Alu 1 234 -78 210 71 0 0 chr12 63453281 63453309 -80829180 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 929 168 6 0 chr12 63453460 63453639 -80828850 + CT-rich Low_complexity Low_complexity 1 180 0 557 130 0 0 chr12 63454380 63454457 -80828032 - U6 snRNA snRNA -28 79 3 1553 159 45 35 chr12 63454458 63454748 -80827741 - AluJb SINE Alu -19 293 1 2476 92 9 15 chr12 63454868 63455203 -80827286 - L1PA10 LINE L1 -1 6167 5835 1000 63 0 56 chr12 63455204 63455346 -80827143 - L1PA10 LINE L1 -250 5918 5785 186 294 15 15 chr12 63455677 63455745 -80826744 + MIR SINE MIR 182 249 -13 49 66 0 0 chr12 63456557 63456648 -80825841 + AT_rich Low_complexity Low_complexity 1 91 0 379 209 173 0 chr12 63456729 63456839 -80825650 - MER112 DNA MER1_type -115 145 17 1520 167 45 28 chr12 63456840 63457128 -80825361 - AluJb SINE Alu -18 294 2 283 320 33 8 chr12 63457238 63457360 -80825129 - L2 LINE L2 -452 2862 2738 216 0 0 0 chr12 63457383 63457407 -80825082 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1312 122 0 25 chr12 63457411 63457607 -80824882 - AluSg/x SINE Alu -37 275 85 43935 31 21 1 chr12 63457633 63463664 -80818825 - L1PA2 LINE L1 0 6155 1 252 215 154 0 chr12 63463812 63463877 -80818612 + MIR SINE MIR 129 203 -59 1461 173 104 0 chr12 63464037 63464315 -80818174 + AluJo SINE Alu 1 307 -5 2074 126 3 3 chr12 63466827 63467128 -80815361 + AluSx SINE Alu 1 301 -11 1608 161 109 0 chr12 63467186 63467460 -80815029 - AluJb SINE Alu -8 304 1 1543 140 108 28 chr12 63468477 63468763 -80813726 - AluJo SINE Alu -2 310 2 265 237 62 37 chr12 63468876 63469011 -80813478 + MIR SINE MIR 92 226 -36 1061 247 40 35 chr12 63469267 63469643 -80812846 - L1M4 LINE L1 -3543 2603 2226 342 256 186 0 chr12 63469704 63469876 -80812613 - L1MC5 LINE L1 -510 7451 7248 891 158 47 64 chr12 63469887 63470063 -80812426 - L1MC5 LINE L1 -751 7210 7037 2220 105 0 19 chr12 63470063 63470378 -80812111 - AluSc SINE Alu 0 309 1 891 158 47 64 chr12 63470378 63470435 -80812054 - L1MC5 LINE L1 -924 7037 6981 288 157 12 48 chr12 63470640 63470723 -80811766 + CT-rich Low_complexity Low_complexity 1 80 0 2052 90 8 0 chr12 63470742 63471008 -80811481 - AluSx SINE Alu -44 268 1 1144 216 118 16 chr12 63472542 63472982 -80809507 - Charlie2 DNA MER1_type -1 2861 2377 23 33 0 0 chr12 63472994 63473024 -80809465 + AT_rich Low_complexity Low_complexity 1 30 0 2241 96 7 3 chr12 63473029 63473330 -80809159 + AluSx SINE Alu 1 302 -10 935 216 86 136 chr12 63473461 63473703 -80808786 - LTR40a LTR ERVL 0 519 267 2518 54 0 3 chr12 63473703 63473999 -80808490 - AluY SINE Alu -16 295 1 935 216 86 136 chr12 63473999 63474302 -80808187 - LTR40a LTR ERVL -252 267 1 577 270 89 60 chr12 63474302 63474546 -80807943 - Charlie2 DNA MER1_type -2524 258 8 1507 162 29 29 chr12 63476396 63476668 -80805821 + AluJb SINE Alu 1 272 -40 738 200 83 46 chr12 63478655 63478895 -80803594 - Charlie4a DNA MER1_type -1 507 259 654 144 17 34 chr12 63478873 63478991 -80803498 - Charlie4a DNA MER1_type -354 154 39 * 544 239 174 0 chr12 63479018 63479173 -80803316 - MER5A DNA MER1_type -3 186 5 2220 92 6 22 chr12 63479181 63479495 -80802994 + AluSq SINE Alu 2 310 -3 198 296 0 19 chr12 63479806 63479860 -80802629 + L2 LINE L2 3134 3186 -86 194 271 0 0 chr12 63480121 63480169 -80802320 - L3 LINE CR1 -903 674 627 187 250 0 26 chr12 63480423 63480499 -80801990 + T-rich Low_complexity Low_complexity 3 76 0 301 293 55 95 chr12 63481727 63482127 -80800362 + L2 LINE L2 2866 3249 -23 368 238 133 0 chr12 63482243 63482348 -80800141 + L2 LINE L2 3194 3312 -1 773 195 0 0 chr12 63482772 63482890 -80799599 + FLAM_A SINE Alu 3 120 -13 182 88 0 29 chr12 63482901 63482935 -80799554 + (CAT)n Simple_repeat Simple_repeat 2 34 0 2084 138 0 0 chr12 63483061 63483352 -80799137 - AluSx SINE Alu -21 291 1 268 275 0 22 chr12 63484550 63484641 -80797848 + L1MC4 LINE L1 6614 6702 -1340 * 275 176 0 0 chr12 63484604 63484655 -80797834 - L1MC4 LINE L1 -1339 6703 6653 2259 117 0 0 chr12 63484655 63484963 -80797526 - AluSq SINE Alu -5 308 1 2054 176 15 50 chr12 63485446 63485850 -80796639 - MLT1B LTR MaLR 0 390 1 268 194 161 0 chr12 63486253 63486315 -80796174 + Charlie8 DNA MER1_type 109 180 -2237 443 214 13 19 chr12 63486647 63486801 -80795688 + CT-rich Low_complexity Low_complexity 4 156 0 186 43 0 0 chr12 63486850 63486873 -80795616 + (CCTG)n Simple_repeat Simple_repeat 2 24 0 551 306 18 36 chr12 63486902 63487121 -80795368 + LTR67 LTR ERVL 335 549 -8 250 252 10 48 chr12 63487886 63487989 -80794500 - L1ME4a LINE L1 -37 6084 5986 280 287 120 40 chr12 63487990 63488140 -80794349 - MLT1K LTR MaLR 0 588 427 1942 89 4 0 chr12 63489396 63489642 -80792847 + AluSx SINE Alu 1 247 -65 1704 174 3 32 chr12 63489819 63490129 -80792360 - AluSx SINE Alu -11 301 1 2305 100 3 0 chr12 63490472 63490771 -80791718 - AluSp SINE Alu -13 300 1 2071 121 17 7 chr12 63490772 63491070 -80791419 - AluSx SINE Alu -11 301 1 26 30 0 0 chr12 63491105 63491138 -80791351 + AT_rich Low_complexity Low_complexity 1 33 0 7096 74 14 49 chr12 63491273 63492121 -80790368 - L1PA10 LINE L1 0 6168 5292 275 49 24 0 chr12 63492121 63492162 -80790327 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2020 135 4 0 chr12 63492162 63492443 -80790046 - AluSx SINE Alu -30 282 1 7096 74 14 49 chr12 63492443 63492644 -80789845 - L1PA10 LINE L1 -874 5294 5128 2226 97 35 0 chr12 63492907 63493195 -80789294 - AluSx SINE Alu -14 298 1 587 157 40 43 chr12 63493957 63494204 -80788285 + AluJ SINE Alu 2 303 -9 25 31 0 0 chr12 63494292 63494324 -80788165 + AT_rich Low_complexity Low_complexity 1 32 0 2263 127 0 0 chr12 63494503 63494803 -80787686 + AluSq SINE Alu 1 300 -13 529 319 141 4 chr12 63494868 63495131 -80787358 - L2 LINE L2 -640 2674 2376 304 208 42 0 chr12 63495402 63495474 -80787015 + MER116 DNA Mariner 6 80 0 216 279 74 49 chr12 63495512 63495634 -80786855 - MIR SINE MIR -65 197 73 2028 113 0 3 chr12 63495879 63496162 -80786327 - AluSx SINE Alu -30 282 1 1091 178 12 0 chr12 63496255 63496424 -80786065 + FAM SINE Alu 2 172 -3 2145 118 14 0 chr12 63496776 63497072 -80785417 + AluSq SINE Alu 1 300 -13 529 319 141 4 chr12 63497137 63497400 -80785089 - L2 LINE L2 -640 2674 2376 304 208 42 0 chr12 63497671 63497743 -80784746 + MER116 DNA Mariner 6 80 0 233 271 68 60 chr12 63497768 63497901 -80784588 - MIR SINE MIR -56 206 73 2084 102 3 7 chr12 63498109 63498428 -80784061 - AluSx SINE Alu 0 318 1 1059 60 40 7 chr12 63498428 63498577 -80783912 - MER30 DNA MER1_type -76 154 1 319 181 56 28 chr12 63498645 63498717 -80783772 + MER81 DNA DNA 1 74 -40 411 250 0 0 chr12 63498721 63498797 -80783692 + MER81 DNA DNA 36 111 -3 1890 110 11 33 chr12 63500667 63500940 -80781549 - AluSx SINE Alu -45 267 1 1509 123 5 14 chr12 63501153 63501365 -80781124 - AluSg SINE Alu -100 210 1 535 264 277 38 chr12 63501463 63501777 -80780712 + L2 LINE L2 2925 3313 0 419 326 137 30 chr12 63501809 63502300 -80780189 - L2 LINE L2 -542 2772 2230 234 255 0 0 chr12 63502432 63502479 -80780010 - L2 LINE L2 -16 3256 3210 1798 168 10 3 chr12 63502847 63503156 -80779333 - AluJb SINE Alu -1 311 1 734 222 60 105 chr12 63503178 63503230 -80779259 - L1MC4 LINE L1 0 8042 7989 3135 127 39 64 chr12 63503230 63503822 -80778667 + L1MB8 LINE L1 5602 6178 0 734 222 60 105 chr12 63503822 63504139 -80778350 - L1MC4 LINE L1 -53 7989 7690 2140 115 10 10 chr12 63504331 63504627 -80777862 - AluSx SINE Alu -16 296 1 24 32 0 0 chr12 63504691 63504722 -80777767 + AT_rich Low_complexity Low_complexity 1 31 0 207 182 0 0 chr12 63505084 63505117 -80777372 + (TG)n Simple_repeat Simple_repeat 2 34 0 1503 199 0 4 chr12 63505175 63505451 -80777038 - AluJb SINE Alu -18 294 20 260 93 23 23 chr12 63505451 63505494 -80776995 - AluJb SINE Alu -256 43 1 2212 111 0 3 chr12 63506364 63506661 -80775828 - AluSq SINE Alu -17 296 1 30 77 0 0 chr12 63506726 63506791 -80775698 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr12 63507180 63507208 -80775281 + AT_rich Low_complexity Low_complexity 1 28 0 1933 125 4 0 chr12 63507655 63507927 -80774562 + AluSx SINE Alu 1 273 -39 254 235 209 26 chr12 63508411 63508526 -80773963 - MLT1H LTR MaLR -381 168 33 2436 160 27 7 chr12 63508590 63508638 -80773851 - L1MB2 LINE L1 0 6180 6134 1886 150 13 0 chr12 63508638 63508938 -80773551 - AluJb SINE Alu -7 305 2 2436 160 27 7 chr12 63508938 63509350 -80773139 - L1MB2 LINE L1 -46 6134 5718 182 263 66 53 chr12 63509357 63509433 -80773056 + L2 LINE L2 3008 3084 -188 273 116 0 0 chr12 63509614 63509657 -80772832 - L1MB4 LINE L1 -2 6178 6136 * 456 165 7 7 chr12 63509627 63509721 -80772768 + L1PA8A LINE L1 6026 6098 -33 1231 211 0 4 chr12 63509743 63509975 -80772514 + AluJo SINE Alu 1 231 -81 210 71 0 0 chr12 63509992 63510020 -80772469 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 399 113 0 0 chr12 63510161 63510223 -80772266 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 917 168 6 0 chr12 63510227 63510406 -80772083 + CT-rich Low_complexity Low_complexity 1 180 0 557 130 0 0 chr12 63511147 63511224 -80771265 - U6 snRNA snRNA -28 79 3 1553 159 45 35 chr12 63511225 63511515 -80770974 - AluJb SINE Alu -19 293 1 2437 93 12 15 chr12 63511635 63511969 -80770520 - L1PA10 LINE L1 -1 6167 5835 644 71 12 0 chr12 63511969 63512053 -80770436 - L1PA10 LINE L1 -249 5919 5835 * 1004 62 7 55 chr12 63512050 63512195 -80770294 - L1PA10 LINE L1 -246 5922 5785 186 294 15 15 chr12 63512526 63512594 -80769895 + MIR SINE MIR 182 249 -13 1833 153 0 0 chr12 63513106 63513380 -80769109 + AluSx SINE Alu 36 309 -3 1902 125 0 28 chr12 63514520 63514808 -80767681 + AluSq SINE Alu 1 280 -33 302 330 161 0 chr12 63515233 63515351 -80767138 - Charlie8 DNA MER1_type -2144 273 137 28 29 0 0 chr12 63515362 63515397 -80767092 + AT_rich Low_complexity Low_complexity 1 35 0 2295 96 0 3 chr12 63515403 63515695 -80766794 - AluSx SINE Alu -17 295 5 637 116 0 0 chr12 63515793 63515879 -80766610 + AluJ/FLAM SINE Alu 2 87 -225 347 259 23 17 chr12 63515956 63516130 -80766359 + CT-rich Low_complexity Low_complexity 3 177 0 453 271 0 17 chr12 63516137 63516318 -80766171 + C-rich Low_complexity Low_complexity 1 178 0 297 311 0 17 chr12 63516358 63516538 -80765951 + CT-rich Low_complexity Low_complexity 3 179 0 1565 140 27 149 chr12 63516896 63517231 -80765258 - AluJb SINE Alu -7 295 2 2111 143 0 0 chr12 63518279 63518586 -80763903 + AluSx SINE Alu 1 307 -5 240 35 0 0 chr12 63518608 63518637 -80763852 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1500 112 14 5 chr12 63518763 63518977 -80763512 - L1PA13 LINE L1 0 6163 5948 639 281 153 22 chr12 63519135 63519363 -80763126 + MIR SINE MIR 2 259 -3 840 161 0 0 chr12 63520358 63520476 -80762013 + AluJb SINE Alu 1 118 -194 1931 151 27 0 chr12 63520545 63520843 -80761646 + AluJo SINE Alu 1 306 -6 195 246 136 73 chr12 63521107 63521217 -80761272 + L2 LINE L2 2242 2358 -956 1504 123 221 0 chr12 63521319 63521563 -80760926 - AluJb SINE Alu -4 298 1 376 272 35 9 chr12 63521864 63521978 -80760511 - L1ME LINE L1 -450 5671 5555 526 248 45 13 chr12 63524509 63524666 -80757823 + MIR SINE MIR 101 262 0 527 270 97 58 chr12 63524928 63525130 -80757359 - L3 LINE CR1 -183 1394 1181 2344 116 23 44 chr12 63525130 63525474 -80757015 + MER1B DNA MER1_type 1 337 0 527 270 97 58 chr12 63525474 63525497 -80756992 - L3 LINE CR1 -396 1181 1160 294 316 115 48 chr12 63526458 63526815 -80755674 + L2 LINE L2 2928 3308 -5 1420 205 38 31 chr12 63527067 63527355 -80755134 + AluJb SINE Alu 1 290 -22 1881 114 26 4 chr12 63527404 63527668 -80754821 - AluSx SINE Alu -8 304 35 527 215 0 0 chr12 63527765 63527858 -80754631 - FRAM SINE Alu -15 161 69 30 0 0 0 chr12 63528254 63528284 -80754205 + AT_rich Low_complexity Low_complexity 1 30 0 1647 168 7 24 chr12 63528284 63528576 -80753913 - AluJo SINE Alu -25 287 1 2286 89 3 22 chr12 63529267 63529582 -80752907 + AluSc SINE Alu 1 309 0 527 193 64 0 chr12 63529817 63529926 -80752563 + MER20 DNA MER1_type 2 117 -102 2148 187 65 48 chr12 63529931 63530550 -80751939 - L1MDa LINE L1 -4743 1663 1035 1907 133 4 7 chr12 63530550 63530828 -80751661 + AluJb SINE Alu 1 277 -35 423 184 0 0 chr12 63530830 63530917 -80751572 + CT-rich Low_complexity Low_complexity 1 87 0 732 237 8 36 chr12 63530934 63531205 -80751284 - L1MDa LINE L1 -5341 1068 819 623 239 100 71 chr12 63532116 63532550 -80749939 - MLT1H LTR MaLR 0 549 69 301 296 30 23 chr12 63532630 63532762 -80749727 - HAL1b LINE L1 -784 564 432 1009 316 142 46 chr12 63533176 63533318 -80749171 + L2 LINE L2 1537 1664 -1608 1527 209 0 14 chr12 63533318 63533610 -80748879 - AluJo SINE Alu -24 288 1 1009 316 142 46 chr12 63533610 63533661 -80748828 + L2 LINE L2 1664 1709 -1563 324 0 0 0 chr12 63533661 63533697 -80748792 + (CA)n Simple_repeat Simple_repeat 2 37 0 1009 316 142 46 chr12 63533697 63535083 -80747406 + L2 LINE L2 1709 3272 0 784 210 112 19 chr12 63535694 63535899 -80746590 - L2 LINE L2 0 3313 3090 269 327 40 0 chr12 63535890 63535991 -80746498 - L2 LINE L2 -526 2788 2684 * 1185 176 0 0 chr12 63536511 63536693 -80745796 - Tigger3(Golem) DNA MER2_type -8 3021 2840 272 59 0 0 chr12 63536691 63536725 -80745764 + Tigger3(Golem) DNA MER2_type 49 82 -2947 * 658 125 75 17 chr12 63536723 63536843 -80745646 + Tigger3(Golem) DNA MER2_type 2721 2847 -182 26 50 0 0 chr12 63536993 63537033 -80745456 + AT_rich Low_complexity Low_complexity 1 40 0 431 276 173 15 chr12 63537513 63537843 -80744646 + L1ME4a LINE L1 5739 6120 -1 371 289 58 0 chr12 63538550 63538671 -80743818 + MIR SINE MIR 123 250 -12 23 33 0 0 chr12 63539039 63539069 -80743420 + AT_rich Low_complexity Low_complexity 1 30 0 605 291 64 14 chr12 63540325 63540545 -80741944 - MIR SINE MIR -21 241 11 902 108 78 0 chr12 63541165 63541294 -80741195 - MER85 DNA T2_type 0 139 1 203 147 0 0 chr12 63541758 63541792 -80740697 + (TCTCTG)n Simple_repeat Simple_repeat 1 34 0 504 0 0 0 chr12 63541795 63541851 -80740638 + (TG)n Simple_repeat Simple_repeat 2 57 0 296 239 37 67 chr12 63541858 63541992 -80740497 + LTR16A1 LTR ERVL 18 147 -310 299 318 11 11 chr12 63542162 63542250 -80740239 - MIR SINE MIR -100 108 21 288 347 224 20 chr12 63542336 63542685 -80739804 + L2 LINE L2 2853 3272 0 212 316 53 61 chr12 63542763 63542877 -80739612 + L2 LINE L2 3151 3263 -9 2185 107 0 7 chr12 63543964 63544264 -80738225 - AluSx SINE Alu -14 298 1 33 25 0 0 chr12 63544264 63544304 -80738185 + AT_rich Low_complexity Low_complexity 1 40 0 370 314 47 18 chr12 63544385 63544554 -80737935 - MIR SINE MIR -53 209 36 2644 49 0 0 chr12 63544596 63544901 -80737588 - AluY SINE Alu -4 307 3 1774 185 0 13 chr12 63545597 63545900 -80736589 + AluJb SINE Alu 5 303 -9 749 275 85 0 chr12 63546141 63546352 -80736137 + MIR SINE MIR 1 229 -33 865 146 0 56 chr12 63546354 63546498 -80735991 + AluJo SINE Alu 1 136 -176 1535 185 25 35 chr12 63546755 63547069 -80735420 - AluJo SINE Alu -1 311 1 236 224 41 0 chr12 63547871 63547920 -80734569 - L3 LINE CR1 -138 1439 1389 308 258 201 88 chr12 63547931 63548125 -80734364 + MIR SINE MIR 35 250 -12 1813 196 25 11 chr12 63548164 63548522 -80733967 + MLT1A1 LTR MaLR 1 363 -2 236 224 41 0 chr12 63549318 63549367 -80733122 - L3 LINE CR1 -138 1439 1389 308 258 201 88 chr12 63549378 63549572 -80732917 + MIR SINE MIR 35 250 -12 1813 196 25 11 chr12 63549611 63549969 -80732520 + MLT1A1 LTR MaLR 1 363 -2 553 161 381 6 chr12 63551161 63551329 -80731160 + MIR SINE MIR 3 233 -29 334 276 57 38 chr12 63551465 63551570 -80730919 + MIR SINE MIR 45 151 -57 2103 122 3 0 chr12 63551580 63551876 -80730613 - AluSx SINE Alu -13 299 3 23 54 0 0 chr12 63553280 63553317 -80729172 + AT_rich Low_complexity Low_complexity 1 37 0 2249 114 80 9 chr12 63553477 63553827 -80728662 + THE1C LTR MaLR 1 375 0 1606 169 9 47 chr12 63553995 63554314 -80728175 - AluJb SINE Alu -5 307 1 198 0 0 0 chr12 63555236 63555258 -80727231 + (T)n Simple_repeat Simple_repeat 1 22 0 347 250 0 0 chr12 63555434 63555506 -80726983 - MIR SINE MIR -2 260 189 * 447 280 57 6 chr12 63555501 63555676 -80726813 + L2 LINE L2 3106 3289 -24 369 188 248 0 chr12 63555707 63555808 -80726681 - MIR SINE MIR -85 177 52 2174 220 64 28 chr12 63555850 63556351 -80726138 + MLT2B1 LTR ERVL 2 520 0 302 345 11 0 chr12 63556354 63556441 -80726048 - MIR SINE MIR -89 119 32 852 250 69 22 chr12 63556862 63557094 -80725395 + MIR SINE MIR 17 259 -3 1163 293 41 41 chr12 63557095 63557563 -80724926 + MLT1J LTR MaLR 3 470 -41 2401 96 0 0 chr12 63557592 63557894 -80724595 - AluSq SINE Alu -2 311 10 2040 123 13 7 chr12 63559839 63560141 -80722348 + AluSx SINE Alu 1 304 -8 26 50 0 0 chr12 63560334 63560374 -80722115 + AT_rich Low_complexity Low_complexity 1 40 0 2021 129 38 0 chr12 63560559 63560846 -80721643 - AluSx SINE Alu -14 298 1 217 317 58 48 chr12 63561774 63561878 -80720611 - L2 LINE L2 -5 3267 3163 297 354 114 6 chr12 63561951 63562109 -80720380 - MIR SINE MIR -81 181 7 613 236 24 0 chr12 63562737 63562864 -80719625 - MLT1A2 LTR MaLR -242 132 3 956 246 103 45 chr12 63562972 63563398 -80719091 + MLT1D LTR MaLR 30 480 -25 1643 121 8 0 chr12 63564156 63564395 -80718094 + AluY SINE Alu 71 311 0 553 152 0 152 chr12 63564797 63565028 -80717461 + MER57A LTR ERV1 1 196 -207 738 131 191 205 chr12 63566499 63566797 -80715692 + AluJo SINE Alu 1 294 -8 862 123 0 0 chr12 63567402 63567524 -80714965 + L1MA8 LINE L1 6150 6271 -20 2407 77 0 3 chr12 63567525 63567825 -80714664 - AluSc SINE Alu -10 299 1 2038 141 3 0 chr12 63568964 63569263 -80713226 + AluSx SINE Alu 1 300 -12 187 176 0 0 chr12 63569952 63569986 -80712503 - MIR SINE MIR 0 262 229 847 243 46 29 chr12 63570001 63570240 -80712249 + MIR SINE MIR 17 259 -3 248 366 33 42 chr12 63570250 63570326 -80712163 - MIR SINE MIR -43 219 144 2238 117 3 0 chr12 63570326 63570633 -80711856 - AluSq SINE Alu -5 308 1 248 366 33 42 chr12 63570633 63570769 -80711720 - MIR SINE MIR -118 144 9 471 178 133 14 chr12 63570988 63571117 -80711372 - MIR SINE MIR -62 146 13 2201 115 3 0 chr12 63571352 63571647 -80710842 + AluSx SINE Alu 1 296 -16 2013 133 10 0 chr12 63572098 63572391 -80710098 + AluSx SINE Alu 1 296 -16 437 127 76 6 chr12 63572615 63572773 -80709716 + GA-rich Low_complexity Low_complexity 1 169 0 401 228 258 68 chr12 63572945 63573314 -80709175 - L1MEd LINE L1 -5680 439 1 362 254 72 107 chr12 63573456 63573775 -80708714 + L2 LINE L2 2837 3144 -128 2303 104 0 0 chr12 63573787 63574085 -80708404 - AluSx SINE Alu -14 298 1 399 21 0 0 chr12 63574953 63575001 -80707488 + (TA)n Simple_repeat Simple_repeat 2 49 0 1129 115 0 6 chr12 63575011 63575167 -80707322 - AluSx SINE Alu -13 299 145 461 154 0 0 chr12 63575167 63575232 -80707257 - AluSx SINE Alu -247 65 1 275 314 21 57 chr12 63576382 63576522 -80705967 - MIR SINE MIR -91 171 37 2519 55 7 0 chr12 63576560 63576869 -80705620 - AluY SINE Alu 0 311 1 197 32 0 32 chr12 63577415 63577446 -80705043 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 2254 113 0 0 chr12 63577907 63578208 -80704281 + AluSx SINE Alu 1 301 -11 1581 190 3 14 chr12 63578459 63578749 -80703740 + AluJo SINE Alu 13 299 -13 317 293 0 0 chr12 63579066 63579141 -80703348 - L2 LINE L2 -12 3260 3186 3991 169 27 29 chr12 63579319 63579463 -80703026 + L1MB8 LINE L1 5182 5325 -853 2450 77 13 0 chr12 63579463 63579762 -80702727 + AluSc SINE Alu 1 303 -6 3991 169 27 29 chr12 63579762 63580587 -80701902 + L1MB8 LINE L1 5325 6161 -17 359 298 75 43 chr12 63581936 63582121 -80700368 + MIR SINE MIR 11 210 -52 182 171 49 0 chr12 63582186 63582227 -80700262 - L2 LINE L2 -5 3308 3266 1005 197 52 28 chr12 63583090 63583379 -80699110 + MER33 DNA MER1_type 1 296 -28 24 32 0 0 chr12 63584259 63584290 -80698199 + AT_rich Low_complexity Low_complexity 1 31 0 623 318 47 9 chr12 63585220 63585434 -80697055 - MIR SINE MIR -10 252 31 2253 88 7 3 chr12 63585639 63585934 -80696555 - AluSx SINE Alu -16 296 1 843 121 0 0 chr12 63586613 63586729 -80695760 - FLAM_C SINE Alu -27 116 1 285 118 0 0 chr12 63587016 63587067 -80695422 + (CA)n Simple_repeat Simple_repeat 1 51 0 185 218 236 0 chr12 63587384 63587439 -80695050 - L2 LINE L2 -4 3268 3201 2536 71 0 3 chr12 63588980 63589289 -80693200 - AluY SINE Alu -3 308 1 653 269 46 69 chr12 63590213 63590562 -80691927 - MER102b DNA MER1_type 0 341 1 1667 198 0 3 chr12 63591354 63591642 -80690847 - AluJo SINE Alu -25 287 1 22 0 0 0 chr12 63591711 63591733 -80690756 + AT_rich Low_complexity Low_complexity 1 22 0 282 308 19 10 chr12 63592445 63592549 -80689940 + MIR SINE MIR 157 261 -1 2419 94 0 3 chr12 63592682 63592989 -80689500 + AluSq SINE Alu 1 306 -7 24 0 0 0 chr12 63593113 63593137 -80689352 + AT_rich Low_complexity Low_complexity 1 24 0 695 186 0 0 chr12 63593165 63593278 -80689211 - FLAM_C SINE Alu -30 113 1 22 80 0 0 chr12 63593283 63593333 -80689156 + AT_rich Low_complexity Low_complexity 1 50 0 483 294 57 45 chr12 63593653 63593830 -80688659 - MIR SINE MIR -64 198 20 408 234 54 9 chr12 63594274 63594385 -80688104 + MIR SINE MIR 48 163 -99 672 243 73 18 chr12 63594530 63594760 -80687729 - MIR SINE MIR -20 242 1 1852 146 78 0 chr12 63595023 63595380 -80687109 + L1MA5 LINE L1 5911 6295 -5 1225 181 44 14 chr12 63595748 63596041 -80686448 - MER33 DNA MER1_type -22 302 1 2076 134 0 0 chr12 63596094 63596386 -80686103 + AluSx SINE Alu 1 292 -20 607 303 66 28 chr12 63596818 63597138 -80685351 + L2 LINE L2 2970 3301 -12 181 283 83 50 chr12 63597131 63597191 -80685298 - L2 LINE L2 0 3272 3211 * 286 288 82 7 chr12 63597234 63597380 -80685109 + MER115 DNA AcHobo 102 258 -435 534 239 34 39 chr12 63597517 63597722 -80684767 + MER3 DNA MER1_type 5 208 -1 2171 176 69 11 chr12 63597758 63598235 -80684254 - MLT1D LTR MaLR 0 505 1 467 295 128 17 chr12 63598887 63599121 -80683368 + MIR SINE MIR 3 262 0 2077 157 99 7 chr12 63601621 63602067 -80680422 + L1MB8 LINE L1 5692 6178 0 640 131 191 205 chr12 63602435 63602733 -80679756 + AluJo SINE Alu 1 294 -8 897 108 0 0 chr12 63603338 63603454 -80679035 + L1MA8 LINE L1 6150 6268 -23 2274 113 0 3 chr12 63603454 63603764 -80678725 - AluSx SINE Alu -3 309 1 897 108 0 0 chr12 63603764 63603786 -80678703 + L1MA8 LINE L1 6267 6288 -3 386 314 47 18 chr12 63603885 63604054 -80678435 - MIR SINE MIR -53 209 36 2622 49 0 0 chr12 63604096 63604401 -80678088 - AluY SINE Alu -4 307 3 1809 185 0 13 chr12 63605097 63605400 -80677089 + AluJb SINE Alu 5 303 -9 762 275 85 0 chr12 63605641 63605852 -80676637 + MIR SINE MIR 1 229 -33 878 146 0 56 chr12 63605854 63605998 -80676491 + AluJo SINE Alu 1 136 -176 1565 185 25 35 chr12 63606255 63606569 -80675920 - AluJo SINE Alu -1 311 1 2518 87 0 0 chr12 63607336 63607646 -80674843 + AluSx SINE Alu 1 310 -2 249 358 18 9 chr12 63607671 63607780 -80674709 - L2 LINE L2 -7 3265 3156 195 42 0 0 chr12 63607895 63607919 -80674570 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 1993 77 0 0 chr12 63609108 63609413 -80673076 + AluY SINE Alu 37 341 0 349 152 25 79 chr12 63609568 63610035 -80672454 + (TA)n Simple_repeat Simple_repeat 1 441 0 191 389 30 38 chr12 63610072 63610203 -80672286 - L2 LINE L2 0 3272 3143 673 247 57 32 chr12 63610724 63611003 -80671486 + L1ME1 LINE L1 3863 4148 -1998 * 1449 203 65 12 chr12 63611001 63611429 -80671060 + L1ME1 LINE L1 4634 5084 -1062 * 2433 193 73 42 chr12 63611422 63611956 -80670533 + L1ME1 LINE L1 5409 6114 -220 2021 123 0 28 chr12 63611956 63612273 -80670216 + AluSg SINE Alu 1 308 -2 2433 193 73 42 chr12 63612273 63612502 -80669987 + L1ME1 LINE L1 6114 6334 0 270 283 17 33 chr12 63612935 63613108 -80669381 + LTR16A LTR ERVL 42 292 -158 1729 62 18 0 chr12 63613304 63613528 -80668961 + L1PA7 LINE L1 5925 6152 -2 1448 141 177 10 chr12 63614247 63614552 -80667937 + MLT1A1 LTR MaLR 10 365 0 508 205 55 47 chr12 63614553 63614680 -80667809 + MIR SINE MIR 57 184 -78 378 281 5 91 chr12 63614947 63615157 -80667332 + L2 LINE L2 2197 2388 -926 814 226 63 44 chr12 63615187 63615439 -80667050 + MIR SINE MIR 6 262 0 344 320 19 0 chr12 63615468 63615571 -80666918 + L2 LINE L2 3162 3266 -6 37 39 0 0 chr12 63617618 63617669 -80664820 + AT_rich Low_complexity Low_complexity 1 51 0 2267 98 0 7 chr12 63618537 63618842 -80663647 + AluSq SINE Alu 1 303 -10 1831 160 3 23 chr12 63619627 63619927 -80662562 - AluJo SINE Alu -18 294 1 196 271 0 21 chr12 63621736 63621784 -80660705 + L2 LINE L2 3201 3247 -25 240 240 60 60 chr12 63621896 63621996 -80660493 + MIR SINE MIR 89 188 -74 281 222 37 0 chr12 63622743 63622824 -80659665 - L1ME4a LINE L1 -73 6048 5965 23 0 0 0 chr12 63623446 63623469 -80659020 + AT_rich Low_complexity Low_complexity 1 23 0 444 240 16 62 chr12 63623611 63623740 -80658749 - L2 LINE L2 -5 3267 3145 209 286 57 0 chr12 63623846 63623916 -80658573 + L3b LINE CR1 1293 1366 -217 354 64 0 0 chr12 63625563 63625610 -80656879 - L1PA4 LINE L1 -8 6147 6101 2135 113 7 0 chr12 63625610 63625893 -80656596 - AluSc SINE Alu -24 285 1 1565 104 0 23 chr12 63626502 63626723 -80655766 - AluSg/x SINE Alu -12 298 83 206 341 37 67 chr12 63627069 63627204 -80655285 + L2 LINE L2 3183 3313 0 199 191 0 111 chr12 63627263 63627326 -80655163 + L2 LINE L2 3257 3312 -1 971 128 0 0 chr12 63628459 63628592 -80653897 - AluSq/x SINE Alu -180 133 1 1811 54 0 0 chr12 63628686 63628927 -80653562 - L1PA8A LINE L1 -569 5562 5322 233 151 94 19 chr12 63628925 63628978 -80653511 + L1PA8A LINE L1 6074 6130 -1 * 489 271 7 14 chr12 63629230 63629370 -80653119 + MER5B DNA MER1_type 40 178 0 577 304 70 2 chr12 63629442 63629630 -80652859 - MIR SINE MIR -66 142 2 347 181 18 60 chr12 63629630 63629718 -80652771 - L1ME2 LINE L1 -10 6152 6062 2895 150 91 22 chr12 63629718 63630211 -80652278 + MER1A DNA MER1_type 1 527 0 347 181 18 60 chr12 63630211 63630590 -80651899 - L1ME2 LINE L1 -100 6062 5530 292 123 0 123 chr12 63630847 63630912 -80651577 - MER103 DNA DNA -50 116 60 230 347 52 67 chr12 63631405 63631598 -80650891 - L2 LINE L2 -3 3269 3080 1438 139 43 4 chr12 63631959 63632240 -80650249 + L1MA7 LINE L1 5998 6289 -2 519 329 69 22 chr12 63632308 63632539 -80649950 + MIR SINE MIR 21 262 0 208 160 40 40 chr12 63633899 63633949 -80648540 - L2 LINE L2 -2 3311 3262 2157 99 6 52 chr12 63634616 63634940 -80647549 - AluSx SINE Alu -3 309 1 439 293 84 31 chr12 63635943 63636134 -80646355 - L2 LINE L2 -2 3270 3070 184 340 52 46 chr12 63636124 63636277 -80646212 - L2 LINE L2 -389 2925 2772 * 2001 148 0 3 chr12 63636521 63636826 -80645663 + AluSx SINE Alu 1 304 -8 325 157 0 0 chr12 63637060 63637111 -80645378 - FRAM SINE Alu -60 106 56 726 353 161 17 chr12 63637212 63637876 -80644613 - L2 LINE L2 -227 3045 2279 867 307 98 22 chr12 63637891 63638541 -80643948 + L2 LINE L2 2342 3041 -272 942 320 25 2 chr12 63638549 63638987 -80643502 + L1ME3 LINE L1 5401 5848 -314 234 150 0 0 chr12 63639263 63639303 -80643186 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 466 125 0 0 chr12 63639330 63639394 -80643095 + AluS SINE Alu 1 64 -254 1799 162 0 28 chr12 63639442 63639763 -80642726 + AluJb SINE Alu 1 312 0 548 267 68 0 chr12 63639888 63640034 -80642455 + L2 LINE L2 3158 3313 0 1832 186 3 0 chr12 63640088 63640379 -80642110 + AluJb SINE Alu 6 297 -15 527 276 61 28 chr12 63640380 63640561 -80641928 + MIR SINE MIR 2 188 -74 300 243 48 39 chr12 63641564 63641667 -80640822 - MIR SINE MIR 0 262 159 1932 155 30 3 chr12 63642464 63642767 -80639722 + AluJb SINE Alu 1 311 -1 255 332 114 31 chr12 63644446 63644639 -80637850 - L2 LINE L2 0 3313 3105 871 188 169 4 chr12 63644822 63645083 -80637406 - MER5C DNA MER1_type -1 323 20 326 258 0 32 chr12 63645236 63645329 -80637160 + L1MC4 LINE L1 6614 6703 -1339 * 343 264 35 0 chr12 63645246 63645333 -80637156 - L1MC4 LINE L1 -1339 6703 6614 262 139 16 2 chr12 63645337 63645585 -80636904 + AluJb SINE Alu 5 302 0 1826 160 3 23 chr12 63646146 63646453 -80636036 - AluJo SINE Alu -11 301 1 819 173 63 47 chr12 63646458 63646649 -80635840 + MIR SINE MIR 67 260 -2 2556 68 0 0 chr12 63647451 63647761 -80634728 - AluY SINE Alu -1 310 1 1744 163 135 3 chr12 63648697 63649046 -80633443 + MLT2C1 LTR ERVL 3 397 0 2202 104 3 0 chr12 63649591 63649879 -80632610 + AluSc SINE Alu 1 289 -20 3897 187 36 40 chr12 63649921 63650089 -80632400 + L1ME1 LINE L1 4276 4443 -1741 1946 106 98 0 chr12 63650089 63650354 -80632135 + AluSq SINE Alu 1 291 -22 3897 187 36 40 chr12 63650354 63651210 -80631279 + L1ME1 LINE L1 4443 5300 -884 2298 105 0 10 chr12 63651210 63651523 -80630966 - AluSq SINE Alu -3 310 1 3897 187 36 40 chr12 63651523 63651828 -80630661 + L1ME1 LINE L1 5300 5605 -579 412 202 0 0 chr12 63651828 63651912 -80630577 + AluJ/FRAM SINE Alu 227 310 -2 2478 57 3 13 chr12 63652165 63652479 -80630010 + AluY SINE Alu 1 311 0 1250 205 29 16 chr12 63652523 63652830 -80629659 + L1ME1 LINE L1 5782 6092 -74 387 268 57 25 chr12 63653457 63653614 -80628875 - MER117 DNA MER1_type -20 177 16 22 35 0 0 chr12 63653676 63653705 -80628784 + AT_rich Low_complexity Low_complexity 1 29 0 1690 176 13 23 chr12 63653827 63654129 -80628360 - AluJo SINE Alu -13 299 1 925 226 60 69 chr12 63654294 63654643 -80627846 - MLT1J LTR MaLR -165 346 1 1518 156 11 14 chr12 63654847 63655130 -80627359 + AluSg SINE Alu 1 282 -28 519 146 0 58 chr12 63655130 63655233 -80627256 + AluSg/x SINE Alu 210 306 -4 1049 98 0 0 chr12 63655235 63655368 -80627121 + AluSq/x SINE Alu 1 133 -180 834 160 23 0 chr12 63655418 63655583 -80626906 + AluSc SINE Alu 146 313 0 255 77 58 39 chr12 63655588 63655640 -80626849 + L1MC5 LINE L1 7841 7893 -68 21 0 0 0 chr12 63655699 63655720 -80626769 + AT_rich Low_complexity Low_complexity 1 21 0 704 230 80 52 chr12 63656294 63656507 -80625982 + MIR SINE MIR 44 262 0 890 114 0 8 chr12 63656621 63656744 -80625745 - AluJb SINE Alu -186 126 5 326 328 25 42 chr12 63657600 63657719 -80624770 + L2 LINE L2 3154 3270 -2 1380 153 168 37 chr12 63657946 63658214 -80624275 - AluJb SINE Alu -9 303 1 268 297 76 17 chr12 63660527 63660645 -80621844 + Charlie8 DNA MER1_type 9 133 -2284 517 239 117 59 chr12 63661063 63661285 -80621204 - MIR SINE MIR -13 249 15 229 292 142 17 chr12 63661567 63661687 -80620802 + L2 LINE L2 2948 3082 -190 204 143 0 0 chr12 63661802 63661837 -80620652 - L2 LINE L2 -4 3268 3234 425 200 12 0 chr12 63663449 63663529 -80618960 + MER5A DNA MER1_type 1 81 -108 1805 112 8 12 chr12 63663769 63664028 -80618461 + AluSx SINE Alu 49 306 -6 263 293 24 81 chr12 63664556 63664679 -80617810 + MIR SINE MIR 51 166 -96 229 93 463 0 chr12 63664759 63664813 -80617676 - MADE1 DNA Mariner -1 79 1 1761 174 96 3 chr12 63665105 63665461 -80617028 + MSTD LTR MaLR 1 389 -7 308 254 0 0 chr12 63665796 63665867 -80616622 + MER92B LTR ERV1 512 582 -54 1512 161 69 49 chr12 63665900 63666179 -80616310 + AluJo SINE Alu 1 288 -24 2395 87 0 3 chr12 63666179 63666490 -80615999 + AluSx SINE Alu 1 310 -2 1512 161 69 49 chr12 63666490 63666515 -80615974 + AluJo SINE Alu 288 311 -1 2584 114 20 2 chr12 63666902 63667298 -80615191 + MER57A LTR ERV1 1 403 0 288 182 18 0 chr12 63667346 63667401 -80615088 - AluSp/q SINE Alu -8 295 240 947 179 10 50 chr12 63667402 63667603 -80614886 - AluJb SINE Alu -119 193 1 268 297 76 17 chr12 63669917 63670035 -80612454 + Charlie8 DNA MER1_type 9 133 -2284 491 243 117 59 chr12 63670453 63670675 -80611814 - MIR SINE MIR -13 249 15 521 192 192 12 chr12 63671167 63671339 -80611150 + MER3 DNA MER1_type 3 205 -4 5517 50 4 9 chr12 63671524 63672218 -80610271 + L1PA5 LINE L1 5464 6154 0 229 276 0 17 chr12 63672489 63672547 -80609942 + L2 LINE L2 3216 3272 0 2223 100 3 3 chr12 63672554 63672853 -80609636 + AluSx SINE Alu 3 301 -11 425 233 39 0 chr12 63673029 63673132 -80609357 + MIR3 SINE MIR 88 194 -14 395 265 48 36 chr12 63674411 63674577 -80607912 + HAL1 LINE L1 2330 2497 -10 2069 142 10 0 chr12 63674677 63674986 -80607503 - AluSx SINE Alu 0 312 1 255 358 91 43 chr12 63675532 63675904 -80606585 - L2 LINE L2 -2690 624 235 2276 112 0 0 chr12 63676762 63677066 -80605423 - AluSg SINE Alu -6 304 1 223 100 0 0 chr12 63677576 63677616 -80604873 - L2 LINE L2 -298 2974 2935 2300 107 0 0 chr12 63679519 63679818 -80602671 + AluSx SINE Alu 1 299 -13 1668 150 49 3 chr12 63679922 63680208 -80602281 + AluJb SINE Alu 1 299 -13 1985 148 0 3 chr12 63680331 63680629 -80601860 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr12 63681072 63681095 -80601394 + AT_rich Low_complexity Low_complexity 1 23 0 307 257 11 123 chr12 63681142 63681329 -80601160 - MIR SINE MIR -1 261 96 1755 156 64 0 chr12 63681703 63681985 -80600504 + AluJb SINE Alu 1 300 -12 383 213 13 0 chr12 63682010 63682085 -80600404 - MER5C DNA MER1_type -248 76 1 25 65 0 0 chr12 63682174 63682220 -80600269 + AT_rich Low_complexity Low_complexity 1 46 0 8932 110 10 23 chr12 63682243 63683387 -80599102 + HSMAR1 DNA Mariner 7 1134 -153 2047 103 0 41 chr12 63683387 63683679 -80598810 - AluSx SINE Alu -32 280 1 8932 110 10 23 chr12 63683679 63683832 -80598657 + HSMAR1 DNA Mariner 1134 1287 0 646 132 23 31 chr12 63684005 63684134 -80598355 - L1MC3 LINE L1 -169 7616 7489 770 258 107 9 chr12 63684208 63684433 -80598056 - MIR SINE MIR -11 251 5 2735 144 7 7 chr12 63684731 63685134 -80597355 + MER57A LTR ERV1 1 403 0 2144 134 3 0 chr12 63685284 63685589 -80596900 + AluSx SINE Alu 1 306 -6 366 236 91 0 chr12 63686603 63686713 -80595776 - L1M4 LINE L1 -3141 3005 2886 2165 108 3 3 chr12 63686728 63687015 -80595474 - AluSc SINE Alu -22 287 1 1565 104 0 23 chr12 63687624 63687845 -80594644 - AluSg SINE Alu -12 300 85 198 341 37 67 chr12 63688191 63688326 -80594163 + L2 LINE L2 3183 3313 0 197 191 0 111 chr12 63688385 63688448 -80594041 + L2 LINE L2 3257 3312 -1 966 128 0 0 chr12 63689581 63689714 -80592775 - AluSq/x SINE Alu -180 133 1 1943 54 0 0 chr12 63689808 63690049 -80592440 - L1PA8A LINE L1 -569 5562 5322 251 132 75 0 chr12 63690047 63690100 -80592389 + L1PA8A LINE L1 6074 6130 -1 * 489 271 7 14 chr12 63690352 63690492 -80591997 + MER5B DNA MER1_type 40 178 0 564 304 70 2 chr12 63690564 63690752 -80591737 - MIR SINE MIR -66 142 2 383 188 10 48 chr12 63690752 63690840 -80591649 - L1ME2 LINE L1 -12 6152 6062 3114 150 91 22 chr12 63690840 63691333 -80591156 + MER1A DNA MER1_type 1 527 0 383 188 10 48 chr12 63691333 63691721 -80590768 - L1ME2 LINE L1 -102 6062 5524 321 172 0 118 chr12 63691941 63692034 -80590455 - MER103 DNA DNA -25 141 60 231 347 52 67 chr12 63692527 63692720 -80589769 - L2 LINE L2 -3 3269 3080 1636 135 39 3 chr12 63693081 63693363 -80589126 + L1MA7 LINE L1 5998 6289 -2 508 333 69 22 chr12 63693431 63693662 -80588827 + MIR SINE MIR 21 262 0 491 116 23 35 chr12 63693878 63693964 -80588525 - AluSg SINE Alu -224 86 2 764 210 20 75 chr12 63693971 63694050 -80588439 - MER20B DNA MER1_type -31 752 670 1868 135 30 10 chr12 63694050 63694163 -80588326 + AluJo SINE Alu 9 118 -194 236 89 0 22 chr12 63694163 63694208 -80588281 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1868 135 30 10 chr12 63694208 63694391 -80588098 + AluJo SINE Alu 118 311 -1 764 210 20 75 chr12 63694391 63694563 -80587926 - MER20B DNA MER1_type -113 670 515 1133 170 9 37 chr12 63694597 63694815 -80587674 + AluJb SINE Alu 1 212 -100 261 0 0 0 chr12 63694837 63694866 -80587623 + (GA)n Simple_repeat Simple_repeat 2 30 0 1530 170 0 0 chr12 63694946 63695187 -80587302 + AluJb SINE Alu 41 281 -31 180 0 0 0 chr12 63695195 63695215 -80587274 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1781 134 94 0 chr12 63695547 63695822 -80586667 - AluSx SINE Alu -11 301 1 240 298 36 0 chr12 63695894 63695978 -80586511 + Charlie7 DNA MER1_type 14 100 -2512 490 226 19 26 chr12 63695978 63696133 -80586356 + Charlie7 DNA MER1_type 2458 2611 -1 2042 94 33 4 chr12 63696234 63696531 -80585958 - AluSx SINE Alu 0 305 1 287 243 78 29 chr12 63696734 63696837 -80585652 - MER34 LTR ERV1 0 542 435 9875 102 17 7 chr12 63697152 63698271 -80584218 - L1P LINE L1 -1668 4478 3339 2311 92 14 0 chr12 63698271 63698564 -80583925 - AluSx SINE Alu -15 297 1 9875 102 17 7 chr12 63698564 63698897 -80583592 - L1P LINE L1 -2807 3339 3011 673 215 84 72 chr12 63698897 63699134 -80583355 + LTR8A LTR ERV1 488 727 0 389 148 0 114 chr12 63699156 63699189 -80583300 + MLT1D LTR MaLR 27 62 -443 1009 209 119 119 chr12 63699189 63699754 -80582735 + MER34B LTR ERV1 1 565 0 389 148 0 114 chr12 63699754 63699808 -80582681 + MLT1D LTR MaLR 62 104 -401 * 1157 231 8 16 chr12 63699791 63699923 -80582566 + MLT1D LTR MaLR 234 365 -140 1713 182 77 64 chr12 63699923 63700314 -80582175 - MSTD LTR MaLR 0 396 1 1157 231 8 16 chr12 63700314 63700424 -80582065 + MLT1D LTR MaLR 365 474 -31 1808 179 0 0 chr12 63700424 63700714 -80581775 - AluJo SINE Alu -22 290 1 2247 116 0 7 chr12 63700723 63701025 -80581464 - AluSq SINE Alu -13 300 1 1808 142 80 7 chr12 63701833 63702121 -80580368 + AluSx SINE Alu 4 312 0 414 234 152 69 chr12 63702132 63702248 -80580241 - MIR SINE MIR -98 164 32 908 130 0 36 chr12 63702248 63702386 -80580103 - FLAM_C SINE Alu 0 133 1 414 234 152 69 chr12 63702386 63702414 -80580075 - MIR SINE MIR -230 32 8 2049 136 0 14 chr12 63702529 63702823 -80579666 - AluSx SINE Alu -18 294 5 1784 154 41 10 chr12 63702974 63703266 -80579223 + AluJb SINE Alu 1 301 -11 289 293 214 7 chr12 63703839 63703979 -80578510 + MIR3 SINE MIR 32 200 -8 1196 144 0 0 chr12 63704977 63705150 -80577339 + AluSg/x SINE Alu 124 296 -14 354 188 12 71 chr12 63705171 63705256 -80577233 - MIR3 SINE MIR -54 154 75 2012 113 0 21 chr12 63705385 63705668 -80576821 + AluSx SINE Alu 1 277 -35 41 21 0 0 chr12 63705668 63705716 -80576773 + AT_rich Low_complexity Low_complexity 1 48 0 2156 99 28 0 chr12 63705943 63706225 -80576264 - AluSx SINE Alu -22 290 1 1431 173 52 29 chr12 63706353 63706647 -80575842 - AluSx SINE Alu 0 303 4 195 186 0 0 chr12 63709009 63709052 -80573437 + GA-rich Low_complexity Low_complexity 1 43 0 280 307 40 0 chr12 63709201 63709302 -80573187 - AluSq/x SINE Alu -196 106 2 1590 161 57 0 chr12 63709339 63709618 -80572871 + AluSp SINE Alu 2 296 -17 276 347 200 0 chr12 63709954 63710104 -80572385 - MER5A DNA MER1_type -6 183 4 335 214 205 9 chr12 63710327 63710439 -80572050 + MIR SINE MIR 129 262 0 416 179 26 0 chr12 63710714 63710792 -80571697 + MER116 DNA Mariner 1 80 0 203 190 52 35 chr12 63710856 63710914 -80571575 - MER91 DNA MER1_type -12 128 70 1752 144 37 17 chr12 63712220 63712519 -80569970 - L1MC2 LINE L1 -7 6337 6033 2185 113 0 13 chr12 63712550 63712860 -80569629 - AluSq SINE Alu -7 306 1 330 100 0 28 chr12 63712922 63712986 -80569503 - FLAM SINE Alu -9 124 75 794 176 0 47 chr12 63713089 63713178 -80569311 - FLAM_C SINE Alu -169 143 62 2433 94 0 0 chr12 63713178 63713487 -80569002 + AluSg SINE Alu 1 309 -1 794 176 0 47 chr12 63713487 63713545 -80568944 - FLAM_C SINE Alu -250 62 3 180 337 79 72 chr12 63713754 63714045 -80568444 - L2 LINE L2 -35 3237 2945 256 329 13 40 chr12 63714491 63714640 -80567849 - L2 LINE L2 -569 2745 2601 330 289 108 103 chr12 63714767 63714999 -80567490 + MIR SINE MIR 26 258 -4 710 111 0 0 chr12 63715062 63715152 -80567337 + AluJ/FLAM SINE Alu 2 91 -221 360 269 152 14 chr12 63715325 63715470 -80567019 - MIR SINE MIR -78 184 20 2281 102 13 10 chr12 63715635 63715940 -80566549 - AluSx SINE Alu -6 306 1 25 65 0 0 chr12 63716447 63716493 -80565996 + AT_rich Low_complexity Low_complexity 1 46 0 986 187 93 39 chr12 63716549 63716806 -80565683 - AluJb SINE Alu -13 299 29 1559 269 112 33 chr12 63717060 63717531 -80564958 - L1M4 LINE L1 -1314 4832 4399 2248 97 21 0 chr12 63717531 63717821 -80564668 - AluSp SINE Alu -17 296 1 2211 105 3 10 chr12 63717831 63718126 -80564363 - AluSx SINE Alu -19 293 1 1559 269 112 33 chr12 63718126 63718618 -80563871 - L1M4 LINE L1 -1755 4391 3762 239 71 24 0 chr12 63718618 63718660 -80563829 + (TG)n Simple_repeat Simple_repeat 2 44 0 1559 269 112 33 chr12 63718660 63718769 -80563720 - L1M4 LINE L1 -2384 3762 3663 664 143 0 135 chr12 63718790 63718923 -80563566 - FLAM_C SINE Alu -27 116 2 281 271 164 54 chr12 63718961 63719153 -80563336 - L1M4 LINE L1 -2539 3607 3438 2274 86 10 0 chr12 63719153 63719445 -80563044 - AluSq SINE Alu -18 295 1 281 271 164 54 chr12 63719445 63719620 -80562869 - L1M4 LINE L1 -2708 3438 3284 1650 163 42 24 chr12 63719620 63719909 -80562580 - AluSx SINE Alu -18 294 1 281 271 164 54 chr12 63719909 63720076 -80562413 - L1M4 LINE L1 -2862 3284 3013 366 236 91 0 chr12 63720315 63720425 -80562064 - L1M4 LINE L1 -3141 3005 2886 1821 171 0 16 chr12 63720449 63720753 -80561736 - AluJb SINE Alu -13 299 1 385 254 27 27 chr12 63720842 63720978 -80561511 - L1 LINE L1 -2508 3638 3503 234 313 45 37 chr12 63720997 63721265 -80561224 - L1 LINE L1 -2760 3386 3117 1039 193 6 0 chr12 63721271 63721442 -80561047 - FAM SINE Alu -3 172 1 318 296 98 30 chr12 63721488 63721620 -80560869 - L1 LINE L1 -3038 3108 2968 637 171 0 19 chr12 63721620 63721725 -80560764 - FLAM_C SINE Alu -10 133 31 1378 137 8 21 chr12 63721745 63721979 -80560510 - AluSg/x SINE Alu -15 295 65 586 246 147 5 chr12 63722455 63722646 -80559843 - MIR SINE MIR -39 223 6 209 243 81 0 chr12 63723133 63723207 -80559282 + L3 LINE CR1 1097 1176 -401 230 311 151 8 chr12 63723213 63723332 -80559157 - L2 LINE L2 0 3272 3137 2490 111 8 24 chr12 63723494 63723566 -80558923 - THE1B LTR MaLR 0 364 292 2020 121 7 14 chr12 63723566 63723863 -80558626 + AluSx SINE Alu 1 295 -17 2490 111 8 24 chr12 63723863 63724160 -80558329 - THE1B LTR MaLR -72 292 1 812 199 221 19 chr12 63724452 63724719 -80557770 + MER5C DNA MER1_type 2 322 -2 1570 178 13 36 chr12 63724789 63725092 -80557397 + AluJo SINE Alu 5 300 -12 318 343 67 0 chr12 63725160 63725338 -80557151 - MIR SINE MIR -3 259 70 218 200 0 20 chr12 63725546 63725596 -80556893 + (CA)n Simple_repeat Simple_repeat 1 49 0 885 243 6 0 chr12 63725713 63725890 -80556599 + MER58A DNA MER1_type 47 224 0 24 32 0 0 chr12 63726443 63726474 -80556015 + AT_rich Low_complexity Low_complexity 1 31 0 346 299 82 5 chr12 63726856 63727050 -80555439 - AluYa5 SINE Alu -3 298 90 2103 131 3 3 chr12 63727810 63728107 -80554382 - AluSq SINE Alu -16 297 1 202 225 0 0 chr12 63729768 63729808 -80552681 - L2 LINE L2 -11 3261 3222 1525 186 11 7 chr12 63729848 63730123 -80552366 + AluJo SINE Alu 15 290 -22 32 26 0 0 chr12 63730212 63730251 -80552238 + AT_rich Low_complexity Low_complexity 1 39 0 233 200 46 15 chr12 63730275 63730340 -80552149 - MIR SINE MIR -18 244 178 2288 93 0 0 chr12 63730546 63730837 -80551652 + AluY SINE Alu 1 291 -20 237 105 18 35 chr12 63730937 63730994 -80551495 + (TTTC)n Simple_repeat Simple_repeat 1 56 0 1239 174 5 23 chr12 63731006 63731225 -80551264 - AluJb SINE Alu -20 292 78 830 144 29 0 chr12 63731225 63731364 -80551125 + AluSc SINE Alu 144 286 -23 256 48 0 24 chr12 63731533 63731575 -80550914 + L1MA3 LINE L1 6265 6305 0 2010 138 13 13 chr12 63731598 63731910 -80550579 + AluJb SINE Alu 1 312 0 593 282 89 35 chr12 63731990 63732395 -80550094 + MLT1J LTR MaLR 83 446 0 499 250 91 86 chr12 63732456 63732828 -80549661 + L1ME3A LINE L1 5578 5951 -219 * 736 208 101 37 chr12 63732785 63733083 -80549406 - L1MC5 LINE L1 -32 7929 7613 312 273 58 32 chr12 63733203 63733357 -80549132 + L1ME3A LINE L1 5990 6147 -23 360 188 56 88 chr12 63733845 63734005 -80548484 - L1ME4a LINE L1 -236 5885 5731 1603 124 0 21 chr12 63734068 63734302 -80548187 + AluSg SINE Alu 1 229 -81 1271 52 7 0 chr12 63734435 63734590 -80547899 + AluY SINE Alu 153 308 -3 24 0 0 0 chr12 63735625 63735649 -80546840 + AT_rich Low_complexity Low_complexity 1 24 0 2322 76 0 7 chr12 63735657 63735974 -80546515 + AluSq SINE Alu 1 315 0 403 102 0 0 chr12 63736109 63736168 -80546321 + (C)n Simple_repeat Simple_repeat 1 59 0 21 82 0 0 chr12 63737076 63737125 -80545364 + GC_rich Low_complexity Low_complexity 1 49 0 417 252 245 19 chr12 63788270 63788454 -80494035 + MIR SINE MIR 38 262 0 621 286 62 0 chr12 63788462 63788640 -80493849 + MIR SINE MIR 74 262 0 750 224 62 0 chr12 63789417 63789596 -80492893 - MIR SINE MIR -21 241 52 1281 102 0 3 chr12 63789598 63789834 -80492655 + AluSg SINE Alu 1 295 -15 286 172 0 109 chr12 63789834 63789898 -80492591 - MIR SINE MIR -204 58 2 5972 134 20 59 chr12 63790719 63791240 -80491249 + Tigger1 DNA MER2_type 4 544 -1874 1558 65 0 15 chr12 63791240 63791440 -80491049 + MER107 DNA MER1_type 1 197 0 5972 134 20 59 chr12 63791440 63792129 -80490360 + Tigger1 DNA MER2_type 544 1167 -1251 1702 204 60 53 chr12 63792229 63792665 -80489824 + MER21B LTR ERV1 365 803 -60 1704 200 3 0 chr12 63792666 63792961 -80489528 - AluJo SINE Alu -16 296 1 31 58 0 0 chr12 63793421 63793473 -80489016 + AT_rich Low_complexity Low_complexity 1 52 0 22 94 0 0 chr12 63793496 63793560 -80488929 + AT_rich Low_complexity Low_complexity 1 64 0 21 57 0 0 chr12 63793577 63793612 -80488877 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr12 63793697 63793729 -80488760 + AT_rich Low_complexity Low_complexity 1 32 0 1565 231 72 9 chr12 63793764 63793933 -80488556 + MER110 LTR ERV1 3 160 -331 3974 95 54 18 chr12 63793933 63794544 -80487945 + LTR10E LTR ERV1 1 633 0 1565 231 72 9 chr12 63794544 63794819 -80487670 + MER110 LTR ERV1 160 475 -16 763 241 162 32 chr12 63795122 63795467 -80487022 - L1ME3A LINE L1 -15 6155 5766 1747 183 71 6 chr12 63795867 63796206 -80486283 + MLT1A1 LTR MaLR 5 365 0 761 271 49 46 chr12 63796509 63796900 -80485589 + MLT1I LTR MaLR 16 407 -2 341 313 40 0 chr12 63797206 63797305 -80485184 - L2 LINE L2 0 3313 3211 1273 156 0 55 chr12 63797352 63797570 -80484919 - AluJb SINE Alu -106 206 1 31 0 0 0 chr12 63798351 63798382 -80484107 + AT_rich Low_complexity Low_complexity 1 31 0 1682 171 18 18 chr12 63798382 63798668 -80483821 - AluJo SINE Alu -26 286 1 910 140 11 11 chr12 63799573 63799752 -80482737 + CT-rich Low_complexity Low_complexity 2 180 0 2269 194 51 16 chr12 63799762 63800253 -80482236 + LTR40a LTR ERVL 10 517 -2 266 329 82 41 chr12 63800558 63800704 -80481785 - L3 LINE CR1 -306 1271 1120 797 163 17 21 chr12 63800731 63800970 -80481519 + CT-rich Low_complexity Low_complexity 1 238 0 1176 42 24 6 chr12 63800974 63801140 -80481349 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 1868 163 7 7 chr12 63801155 63801450 -80481039 - AluJo SINE Alu -17 295 1 3025 197 72 31 chr12 63801453 63801611 -80480878 + L1ME LINE L1 4328 4478 -1688 1498 158 0 0 chr12 63801611 63801833 -80480656 + AluJb SINE Alu 84 305 -7 3025 197 72 31 chr12 63801833 63803008 -80479481 + L1ME LINE L1 4478 5711 -455 2114 123 3 13 chr12 63803604 63803904 -80478585 + AluSx SINE Alu 1 297 -15 982 247 129 4 chr12 63804009 63804447 -80478042 - AluJo SINE Alu 0 470 1 199 329 101 58 chr12 63804567 63804895 -80477594 - L2 LINE L2 -667 2647 2306 5934 134 65 32 chr12 63805004 63805441 -80477048 - Tigger3b DNA MER2_type -1798 1230 809 2306 115 6 3 chr12 63805441 63805753 -80476736 + AluSq SINE Alu 1 313 0 5934 134 65 32 chr12 63805753 63806206 -80476283 - Tigger3b DNA MER2_type -2219 809 289 2051 117 174 11 chr12 63806206 63806574 -80475915 + MSTA LTR MaLR 1 428 0 5934 134 65 32 chr12 63806574 63806864 -80475625 - Tigger3b DNA MER2_type -2739 289 10 865 261 177 23 chr12 63807698 63808208 -80474281 - L2 LINE L2 -95 3218 2626 2282 94 7 0 chr12 63808219 63808516 -80473973 + AluSq SINE Alu 1 299 -14 2498 239 130 7 chr12 63808518 63809220 -80473269 - L2 LINE L2 -1878 1436 649 393 167 65 37 chr12 63809352 63809460 -80473029 + L1ME1 LINE L1 6052 6162 -4 25 0 0 0 chr12 63809460 63809485 -80473004 + AT_rich Low_complexity Low_complexity 1 25 0 204 347 21 11 chr12 63809490 63809585 -80472904 - L3 LINE CR1 -477 1100 1005 221 224 20 0 chr12 63809611 63809660 -80472829 - L2 LINE L2 -6 3307 3258 271 331 83 23 chr12 63811107 63811240 -80471249 - MIR3 SINE MIR -66 142 2 2198 121 3 3 chr12 63811425 63811731 -80470758 - AluSx SINE Alu -6 306 1 1794 209 94 58 chr12 63811901 63812505 -80469984 + MLT1E2 LTR MaLR 1 467 0 34 0 0 0 chr12 63813254 63813288 -80469201 + AT_rich Low_complexity Low_complexity 1 34 0 720 184 0 0 chr12 63813288 63813402 -80469087 - FLAM_C SINE Alu -27 116 3 328 276 0 11 chr12 63814456 63814543 -80467946 - MIR SINE MIR -15 247 162 182 255 0 21 chr12 63814673 63814720 -80467769 - MIR SINE MIR -215 47 2 209 357 138 40 chr12 63814734 63814958 -80467531 - L2 LINE L2 -217 3055 2810 308 203 14 0 chr12 63815917 63815986 -80466503 - MLT1J LTR MaLR -342 169 100 21 36 0 0 chr12 63816134 63816162 -80466327 + AT_rich Low_complexity Low_complexity 1 28 0 2317 117 3 0 chr12 63816912 63817220 -80465269 - AluSx SINE Alu -3 309 1 479 228 76 89 chr12 63817819 63818043 -80464446 + LTR67 LTR ERVL 2 222 -335 349 289 57 6 chr12 63818354 63818513 -80463976 - L1MC4a LINE L1 -394 7414 7248 2158 107 3 7 chr12 63818558 63818849 -80463640 - AluSq SINE Alu -21 292 3 1268 102 11 0 chr12 63819176 63819353 -80463136 - AluSp SINE Alu -4 309 131 282 116 0 0 chr12 63819353 63819396 -80463093 + (TA)n Simple_repeat Simple_repeat 1 43 0 1467 162 30 13 chr12 63820486 63820789 -80461700 + L1MA7 LINE L1 5979 6286 -5 1126 170 22 54 chr12 63821010 63821174 -80461315 - MER20 DNA MER1_type 0 219 62 2126 126 3 0 chr12 63821174 63821475 -80461014 + AluSx SINE Alu 1 302 -10 1126 170 22 54 chr12 63821475 63821534 -80460955 - MER20 DNA MER1_type -157 62 3 195 300 0 20 chr12 63821693 63821743 -80460746 + MER5A DNA MER1_type 72 120 -69 555 208 58 8 chr12 63821894 63822014 -80460475 - L2 LINE L2 0 3313 3188 1598 145 37 77 chr12 63822115 63822440 -80460049 - AluJo SINE Alu 0 312 1 1964 145 0 13 chr12 63823478 63823789 -80458700 - AluJb SINE Alu -5 307 1 2060 138 3 3 chr12 63824392 63824688 -80457801 - AluSx SINE Alu -16 296 1 234 265 122 0 chr12 63824980 63825078 -80457411 - MIR SINE MIR -10 252 143 1957 142 54 0 chr12 63825736 63826032 -80456457 + AluJb SINE Alu 1 312 0 2139 222 28 4 chr12 63826278 63826773 -80455716 - MER119 DNA MER1_type -21 562 56 180 111 0 0 chr12 63826857 63826884 -80455605 + (TATG)n Simple_repeat Simple_repeat 4 30 0 538 327 91 56 chr12 63827350 63827983 -80454506 + L2 LINE L2 2439 3084 -188 2527 90 0 0 chr12 63828063 63828375 -80454114 + AluSx SINE Alu 1 312 0 1944 224 94 10 chr12 63828874 63829459 -80453030 + L1MC4a LINE L1 7169 7802 -6 26 30 0 0 chr12 63829467 63829500 -80452989 + AT_rich Low_complexity Low_complexity 1 33 0 1712 156 60 0 chr12 63829731 63830014 -80452475 - AluJb SINE Alu -12 300 1 1644 166 64 7 chr12 63830018 63830313 -80452176 - AluJb SINE Alu 0 312 1 24 32 0 0 chr12 63830313 63830344 -80452145 + AT_rich Low_complexity Low_complexity 1 31 0 805 127 0 70 chr12 63830514 63830656 -80451833 - FLAM_C SINE Alu -1 132 1 25 51 0 0 chr12 63830877 63830916 -80451573 + AT_rich Low_complexity Low_complexity 1 39 0 6289 109 10 43 chr12 63832154 63832246 -80450243 + Tigger1 DNA MER2_type 1384 1477 -941 1910 166 3 10 chr12 63832246 63832560 -80449929 + AluSx SINE Alu 1 312 0 6289 109 10 43 chr12 63832560 63833055 -80449434 + Tigger1 DNA MER2_type 1477 1923 -495 1839 152 31 3 chr12 63833055 63833344 -80449145 - AluSx SINE Alu -15 297 1 6289 109 10 43 chr12 63833344 63833825 -80448664 + Tigger1 DNA MER2_type 1923 2418 0 24 67 0 0 chr12 63834402 63834447 -80448042 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr12 63834603 63834631 -80447858 + AT_rich Low_complexity Low_complexity 1 28 0 1531 199 90 33 chr12 63835975 63836342 -80446147 + MLT1D LTR MaLR 1 388 -117 1547 200 29 56 chr12 63836425 63836703 -80445786 + MLT1D-int LTR MaLR 1 264 -1107 2242 100 0 0 chr12 63836703 63836992 -80445497 - AluSx SINE Alu -18 294 6 1547 200 29 56 chr12 63836992 63837158 -80445331 + MLT1D-int LTR MaLR 264 433 -938 466 198 51 45 chr12 63837429 63837586 -80444903 - MER103 DNA DNA -2 164 7 26 88 0 0 chr12 63837839 63837907 -80444582 + AT_rich Low_complexity Low_complexity 1 68 0 27 49 0 0 chr12 63839029 63839070 -80443419 + GC_rich Low_complexity Low_complexity 1 41 0 328 249 110 106 chr12 63839111 63839463 -80443026 + L1M2 LINE L1 687 1142 -5707 292 292 26 35 chr12 63839548 63839661 -80442828 + L2 LINE L2 3144 3255 -17 444 227 9 0 chr12 63839682 63839792 -80442697 + L1MB4 LINE L1 6069 6179 -1 535 214 27 9 chr12 63839992 63840104 -80442385 + MER81 DNA DNA 1 114 0 786 236 57 32 chr12 63840105 63840351 -80442138 + MER110 LTR ERV1 237 488 -3 2262 102 6 14 chr12 63841922 63842285 -80440204 - L1MA2 LINE L1 -7 6297 5938 745 164 0 23 chr12 63842288 63842416 -80440073 - FLAM_C SINE Alu -16 127 3 3312 87 0 2 chr12 63842418 63842888 -80439601 - L1MA2 LINE L1 -352 5953 5485 272 266 46 0 chr12 63843898 63844007 -80438482 - L1ME LINE L1 -684 5486 5373 2042 137 23 0 chr12 63844182 63844481 -80438008 - AluSg SINE Alu 0 310 5 205 250 0 0 chr12 63844575 63844615 -80437874 + (TG)n Simple_repeat Simple_repeat 2 41 0 325 254 49 81 chr12 63844643 63844828 -80437661 - L1ME LINE L1 -1534 4612 4434 545 224 66 46 chr12 63844852 63845111 -80437378 - L1M4 LINE L1 -1359 4787 4524 1377 183 66 11 chr12 63845504 63845777 -80436712 + MER21B LTR ERV1 1 288 -575 1262 133 17 0 chr12 63845797 63846159 -80436330 - AluSg/x SINE Alu 0 463 99 264 89 22 22 chr12 63846260 63846305 -80436184 - Alu SINE Alu -257 45 1 1667 195 7 7 chr12 63847115 63847418 -80435071 + AluJb SINE Alu 3 305 -7 623 261 109 13 chr12 63847454 63847684 -80434805 + MIR SINE MIR 9 260 -2 2138 125 10 0 chr12 63847862 63848150 -80434339 - AluSx SINE Alu -21 291 1 334 278 56 9 chr12 63848407 63848515 -80433974 + MIR SINE MIR 33 145 -63 2022 94 84 0 chr12 63849175 63849450 -80433039 + AluY SINE Alu 1 298 -13 985 206 104 52 chr12 63849518 63849844 -80432645 + MER2 DNA MER2_type 2 344 0 2231 135 28 6 chr12 63850481 63850837 -80431652 + THE1B LTR MaLR 1 364 0 2092 146 0 0 chr12 63851422 63851730 -80430759 - AluJb SINE Alu -4 308 1 393 309 137 0 chr12 63852364 63852532 -80429957 + MIR SINE MIR 13 203 -59 874 236 208 0 chr12 63852536 63852939 -80429550 - MER69 DNA AcHobo -2 2524 2038 689 270 40 7 chr12 63852932 63853305 -80429184 - MER69 DNA AcHobo -2064 462 4 * 1747 208 28 12 chr12 63853628 63854060 -80428429 - MER31A LTR ERV1 0 485 47 753 273 106 41 chr12 63854082 63854573 -80427916 - MLT1H1 LTR MaLR -22 533 11 669 231 160 13 chr12 63854784 63855009 -80427480 + MLT1H1 LTR MaLR 298 555 0 2232 107 0 0 chr12 63855926 63856217 -80426272 + AluSx SINE Alu 1 291 -21 1237 182 31 154 chr12 63856342 63856913 -80425576 + MLT2B1 LTR ERVL 20 520 0 333 0 0 0 chr12 63856928 63856965 -80425524 + (CA)n Simple_repeat Simple_repeat 2 38 0 259 270 180 20 chr12 63857008 63857108 -80425381 - MIR SINE MIR -116 146 31 307 157 71 0 chr12 63857919 63857989 -80424500 - L1ME LINE L1 -402 5760 5686 379 258 83 96 chr12 63858661 63858838 -80423651 - L1ME4a LINE L1 -127 5994 5821 1714 181 47 6 chr12 63858838 63859203 -80423286 - L1MB7 LINE L1 -18 6166 5787 379 258 83 96 chr12 63859203 63859339 -80423150 - L1ME4a LINE L1 -300 5821 5685 1050 225 0 5 chr12 63859379 63859592 -80422897 - MLT1A1 LTR MaLR -150 215 4 222 259 0 0 chr12 63859594 63859652 -80422837 + GA-rich Low_complexity Low_complexity 1 58 0 1650 164 31 7 chr12 63859918 63860205 -80422284 + AluJo SINE Alu 1 294 -18 191 225 0 0 chr12 63860283 63860323 -80422166 - L2 LINE L2 -669 2645 2606 31 26 0 0 chr12 63860418 63860456 -80422033 + AT_rich Low_complexity Low_complexity 1 38 0 2042 154 0 7 chr12 63860721 63861027 -80421462 - AluJb SINE Alu -8 304 1 2049 124 0 29 chr12 63861050 63861364 -80421125 - AluSg SINE Alu -5 305 1 2019 147 3 0 chr12 63861369 63861662 -80420827 - AluSx SINE Alu -18 294 1 978 198 17 0 chr12 63861826 63861998 -80420491 - MER5B DNA MER1_type -3 175 1 1316 133 0 0 chr12 63862847 63863027 -80419462 + AluSq SINE Alu 1 180 -133 1527 175 16 41 chr12 63863282 63863596 -80418893 - AluJo SINE Alu -6 306 1 2028 121 14 4 chr12 63863949 63864255 -80418234 - AluSx SINE Alu 0 309 1 2012 118 7 20 chr12 63864604 63864908 -80417581 - AluSx SINE Alu -12 300 1 22 0 0 0 chr12 63864916 63864938 -80417551 + AT_rich Low_complexity Low_complexity 1 22 0 1692 153 6 73 chr12 63865345 63865672 -80416817 + AluJb SINE Alu 3 307 -5 1525 138 13 0 chr12 63867010 63867242 -80415247 + MER46A DNA MER2_type 1 235 -1 21 0 0 0 chr12 63867270 63867291 -80415198 + AT_rich Low_complexity Low_complexity 1 21 0 2359 94 0 7 chr12 63867291 63867599 -80414890 + AluSx SINE Alu 1 306 -6 274 349 54 7 chr12 63867642 63867791 -80414698 - MIR SINE MIR -10 252 97 469 307 100 33 chr12 63869115 63869356 -80413133 - MIR SINE MIR 0 262 6 283 182 40 21 chr12 63869624 63869727 -80412762 - L1MC5 LINE L1 0 8042 7838 436 280 33 12 chr12 63870089 63870258 -80412231 - MIR SINE MIR -63 145 21 27 29 0 0 chr12 63872189 63872223 -80410266 + AT_rich Low_complexity Low_complexity 1 34 0 329 135 122 0 chr12 63872662 63872736 -80409753 + L1MC4 LINE L1 7955 8037 -5 27 29 0 0 chr12 63873672 63873706 -80408783 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr12 63874001 63874025 -80408464 + AT_rich Low_complexity Low_complexity 1 24 0 2207 101 3 28 chr12 63874283 63874601 -80407888 - AluSg SINE Alu 0 310 1 309 331 73 7 chr12 63874775 63874911 -80407578 + MIR3 SINE MIR 57 201 -7 22 0 0 0 chr12 63875446 63875468 -80407021 + AT_rich Low_complexity Low_complexity 1 22 0 437 331 25 6 chr12 63877347 63877507 -80404982 + MIR SINE MIR 50 212 -50 318 320 52 17 chr12 63878778 63878950 -80403539 - L1ME4a LINE L1 -1 6103 5926 477 264 117 5 chr12 63879032 63879229 -80403260 - L1ME4a LINE L1 -302 5802 5584 311 186 49 59 chr12 63879230 63879332 -80403157 + L1ME LINE L1 5698 5798 -323 1524 162 8 0 chr12 63879342 63879601 -80402888 - L1MB4 LINE L1 -6 6174 5914 5447 209 105 13 chr12 63879609 63880736 -80401753 - Tigger3b DNA MER2_type -1 1230 1 296 244 221 8 chr12 63880742 63880869 -80401620 - L1ME4a LINE L1 -516 5588 5435 198 0 0 0 chr12 63880914 63880936 -80401553 + (T)n Simple_repeat Simple_repeat 1 22 0 454 350 79 39 chr12 63881091 63881663 -80400826 - L1ME4a LINE L1 -1023 5106 4512 471 220 158 31 chr12 63881806 63882095 -80400394 + Charlie5 DNA MER1_type 1 2623 0 360 322 103 31 chr12 63882157 63882576 -80399913 - L1ME4a LINE L1 -1803 4326 3878 27 0 0 0 chr12 63882580 63882607 -80399882 + AT_rich Low_complexity Low_complexity 1 27 0 756 87 0 0 chr12 63882665 63882769 -80399720 - AluSp SINE Alu -4 309 206 1073 62 0 0 chr12 63882769 63882897 -80399592 - AluSp SINE Alu -185 128 1 2798 305 58 24 chr12 63883374 63884609 -80397880 + L2 LINE L2 1672 2948 -366 429 232 50 10 chr12 63884634 63884733 -80397756 + L2 LINE L2 3211 3313 0 321 336 138 23 chr12 63884970 63885187 -80397302 - MIR SINE MIR 0 262 21 251 263 114 81 chr12 63885609 63885845 -80396644 - HAL1b LINE L1 -774 574 331 183 188 0 0 chr12 63885945 63885993 -80396496 + T-rich Low_complexity Low_complexity 1 48 0 366 280 143 17 chr12 63886142 63886317 -80396172 - L1ME4a LINE L1 -4978 1141 945 1292 193 87 25 chr12 63887732 63888053 -80394436 + MER58B DNA MER1_type 1 341 0 1781 188 64 9 chr12 63888198 63888544 -80393945 - MLT1A1 LTR MaLR 0 365 1 27 49 0 0 chr12 63888682 63888723 -80393766 + AT_rich Low_complexity Low_complexity 1 41 0 376 387 24 6 chr12 63888786 63888954 -80393535 - MIR3 SINE MIR -18 190 20 2230 100 3 0 chr12 63889252 63889543 -80392946 + AluSp SINE Alu 1 292 -21 21 36 0 0 chr12 63890429 63890457 -80392032 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 63890682 63890711 -80391778 + AT_rich Low_complexity Low_complexity 1 29 0 830 258 74 0 chr12 63890721 63890950 -80391539 - MIR SINE MIR -10 252 7 741 206 48 0 chr12 63890955 63891120 -80391369 + MER5A DNA MER1_type 17 189 0 231 287 93 28 chr12 63893143 63893251 -80389238 - MIR SINE MIR -12 250 136 372 22 0 0 chr12 63893374 63893419 -80389070 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 23 0 0 0 chr12 63893800 63893823 -80388666 + AT_rich Low_complexity Low_complexity 1 23 0 613 204 7 21 chr12 63893895 63894037 -80388452 - MER5B DNA MER1_type -6 172 33 4407 252 47 43 chr12 63894042 63895565 -80386924 + L1ME3A LINE L1 42 1571 -4825 392 224 0 0 chr12 63895567 63895643 -80386846 - Tigger5 DNA MER2_type -1 2322 2247 479 203 0 0 chr12 63895682 63895761 -80386728 - Tigger5 DNA MER2_type -2244 79 1 3411 250 65 16 chr12 63895761 63896888 -80385601 + L1ME3A LINE L1 1571 2789 -3426 2425 76 0 3 chr12 63896888 63897192 -80385297 + AluY SINE Alu 1 303 -8 3411 250 65 16 chr12 63897192 63897969 -80384520 + L1ME3A LINE L1 2789 3526 -2689 6305 149 21 25 chr12 63898095 63899715 -80382774 + L1MA3 LINE L1 4687 6292 -13 1430 171 16 8 chr12 63899933 63900191 -80382298 + AluJb SINE Alu 9 268 -44 316 233 11 62 chr12 63900447 63900623 -80381866 + C-rich Low_complexity Low_complexity 6 172 0 245 303 139 0 chr12 63900829 63901067 -80381422 + L1ME3A LINE L1 5065 5335 -880 437 223 132 25 chr12 63901072 63901193 -80381296 - L2 LINE L2 0 3313 3180 1284 275 62 18 chr12 63901193 63901790 -80380699 + L1ME3A LINE L1 5362 6020 -219 2273 57 0 40 chr12 63902102 63902399 -80380090 + AluY SINE Alu 1 285 -26 216 67 0 0 chr12 63902403 63902433 -80380056 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 209 345 92 46 chr12 63902552 63902726 -80379763 + L3 LINE CR1 1023 1204 -373 16812 71 14 3 chr12 63902942 63906680 -80375809 - L1PA5 LINE L1 0 6154 2250 216 0 0 0 chr12 63906680 63906704 -80375785 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 16812 71 14 3 chr12 63906704 63908981 -80373508 - L1PA5 LINE L1 -3904 2250 1 6488 34 4 1 chr12 63909083 63909867 -80372622 - L1PA4 LINE L1 -5 6150 5365 1609 183 42 0 chr12 63909876 63910161 -80372328 - AluJo SINE Alu -15 297 1 1633 71 13 17 chr12 63911988 63912227 -80370262 - MER75B DNA T2_type -3 240 3 16899 70 1 0 chr12 63912423 63914606 -80367883 - L1P LINE L1 -3961 2185 2 400 155 165 58 chr12 63914797 63914900 -80367589 - L2 LINE L2 -1 3312 3199 2272 74 3 3 chr12 63915038 63915358 -80367131 + AluSx SINE Alu 1 320 0 2139 121 0 0 chr12 63915611 63915901 -80366588 + AluSg SINE Alu 1 290 -20 205 376 11 11 chr12 63916548 63916641 -80365848 - MIR SINE MIR -114 148 56 228 191 56 0 chr12 63916672 63916761 -80365728 + (TA)n Simple_repeat Simple_repeat 2 95 0 836 118 69 0 chr12 63916766 63916910 -80365579 - L1MB1 LINE L1 0 6168 6015 357 190 76 0 chr12 63917125 63917204 -80365285 - L2 LINE L2 -4 3309 3225 2220 114 0 7 chr12 63917276 63917573 -80364916 - AluSg SINE Alu -15 295 1 1777 112 39 8 chr12 63918715 63918974 -80363515 + AluSx SINE Alu 32 298 -14 951 171 7 0 chr12 63919177 63919329 -80363160 - AluJb SINE Alu -159 153 1 582 204 88 0 chr12 63919456 63919593 -80362896 + MER58C DNA MER1_type 67 215 0 38 0 0 0 chr12 63920064 63920102 -80362387 + AT_rich Low_complexity Low_complexity 1 38 0 1287 266 122 16 chr12 63921402 63921903 -80360586 - MARNA DNA Mariner -19 567 14 1308 201 91 28 chr12 63922306 63922624 -80359865 + MER2 DNA MER2_type 8 345 0 1254 246 110 61 chr12 63922808 63923661 -80358828 - L1MC5 LINE L1 -442 7519 6625 2403 87 3 0 chr12 63924269 63924579 -80357910 - AluSq SINE Alu -2 311 1 436 190 50 25 chr12 63924960 63925081 -80357408 - L1MEc LINE L1 -2091 4124 4001 2602 217 77 27 chr12 63925089 63926009 -80356480 - L1MEc LINE L1 -2250 3965 3000 3094 266 74 19 chr12 63926009 63927299 -80355190 - L1MEc LINE L1 -4460 1936 576 1208 145 11 69 chr12 63927303 63927565 -80354924 - L1M3 LINE L1 -619 5564 5318 180 77 0 0 chr12 63927593 63927619 -80354870 + (T)n Simple_repeat Simple_repeat 1 26 0 1698 174 58 5 chr12 63927619 63928015 -80354474 - L1M3 LINE L1 -2413 3733 3317 282 275 0 0 chr12 63928003 63928083 -80354406 - L1MEc LINE L1 -6282 114 35 * 1189 242 98 16 chr12 63928084 63928572 -80353917 - L1MC4a LINE L1 -1623 6185 5658 383 388 62 7 chr12 63928585 63928764 -80353725 - L1MEd LINE L1 -5568 551 348 1660 204 16 22 chr12 63928764 63929131 -80353358 - MLT1A1 LTR MaLR 0 365 1 383 388 62 7 chr12 63929131 63929242 -80353247 - L1MEd LINE L1 -5771 348 245 27 29 0 0 chr12 63929305 63929339 -80353150 + AT_rich Low_complexity Low_complexity 1 34 0 1521 183 19 0 chr12 63930534 63930796 -80351693 + AluJb SINE Alu 1 267 -45 601 283 123 47 chr12 63931724 63932596 -80349893 + L1M4 LINE L1 3659 4596 -1550 1023 241 50 0 chr12 63932754 63932995 -80349494 - L1MC4a LINE L1 -1010 6798 6546 2972 228 72 29 chr12 63933119 63934449 -80348040 + L1MDb LINE L1 519 1876 -4530 1292 139 0 0 chr12 63934446 63934662 -80347827 - L1P LINE L1 -1270 4876 4661 * 3246 75 19 0 chr12 63934668 63935097 -80347392 + L1PA10 LINE L1 5729 6165 -3 280 239 46 18 chr12 63935097 63935206 -80347283 + L1MDb LINE L1 1870 1981 -4425 248 318 18 0 chr12 63935211 63935381 -80347108 - L1M4 LINE L1 -3017 3129 2957 534 255 98 57 chr12 63935651 63936070 -80346419 - HAL1b LINE L1 -813 535 100 2497 54 0 0 chr12 63937381 63937678 -80344811 + AluY SINE Alu 1 297 -14 464 185 76 0 chr12 63937714 63937833 -80344656 + LTR9B LTR ERV1 431 558 -86 180 0 0 0 chr12 63937833 63937853 -80344636 + (A)n Simple_repeat Simple_repeat 1 20 0 298 259 231 9 chr12 63938191 63938299 -80344190 - MIR3 SINE MIR -11 197 66 2082 134 3 3 chr12 63939267 63939572 -80342917 - AluSx SINE Alu -4 308 4 261 342 74 13 chr12 63940772 63940921 -80341568 + MIR SINE MIR 84 241 -21 2066 129 7 13 chr12 63941190 63941493 -80340996 + AluSx SINE Alu 1 301 -11 346 331 114 12 chr12 63941505 63941671 -80340818 - MIR3 SINE MIR -6 202 20 46 62 0 0 chr12 63942189 63942270 -80340219 + AT_rich Low_complexity Low_complexity 1 81 0 265 321 19 77 chr12 63942678 63942887 -80339602 - L2 LINE L2 0 3313 3117 274 205 0 64 chr12 63943790 63943946 -80338543 + (CA)n Simple_repeat Simple_repeat 1 146 0 258 32 0 0 chr12 63943969 63944000 -80338489 + (CA)n Simple_repeat Simple_repeat 1 31 0 17700 66 12 2 chr12 63944658 63948407 -80334082 - L1PA3 LINE L1 0 6155 2255 216 0 0 0 chr12 63948407 63948431 -80334058 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 17700 66 12 2 chr12 63948431 63950709 -80331780 - L1PA3 LINE L1 -3900 2255 1 6828 35 1 1 chr12 63950818 63951636 -80330853 - L1PA4 LINE L1 -13 6142 5325 490 196 22 0 chr12 63951852 63951944 -80330545 + AluJb SINE Alu 31 124 -188 1809 109 4 4 chr12 63951959 63952206 -80330283 + AluSp SINE Alu 47 293 -20 361 255 35 50 chr12 63952270 63952411 -80330078 + MIR SINE MIR 78 216 -46 235 256 0 26 chr12 63953264 63953342 -80329147 + (CATA)n Simple_repeat Simple_repeat 1 76 0 233 372 116 0 chr12 63953365 63953494 -80328995 - MIR SINE MIR -67 195 52 28 0 0 0 chr12 63953675 63953703 -80328786 + AT_rich Low_complexity Low_complexity 1 28 0 6917 30 0 2 chr12 63953705 63954712 -80327777 - L1P2 LINE L1 -585 5570 4565 321 118 0 0 chr12 63954724 63954775 -80327714 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 607 191 14 0 chr12 63954807 63954954 -80327535 + CT-rich Low_complexity Low_complexity 3 151 0 1208 147 22 13 chr12 63954954 63955178 -80327311 - AluJb SINE Alu 0 312 87 415 142 340 0 chr12 63955437 63955543 -80326946 - L1PA16 LINE L1 0 6166 6025 383 198 2 2 chr12 63955590 63955672 -80326817 - L1MC3 LINE L1 -17 8155 6640 475 273 206 14 chr12 63955690 63955972 -80326517 + L3 LINE CR1 946 1281 -296 365 337 88 33 chr12 63956260 63956589 -80325900 - L1MC3 LINE L1 -1888 6314 5968 316 213 199 22 chr12 63956591 63956727 -80325762 - L1MC3 LINE L1 -2275 5927 5768 217 0 29 29 chr12 63956782 63956816 -80325673 + (TTTTG)n Simple_repeat Simple_repeat 5 38 0 1801 117 4 0 chr12 63956830 63957077 -80325412 - AluSq SINE Alu -65 248 1 324 0 0 0 chr12 63957531 63957567 -80324922 + (T)n Simple_repeat Simple_repeat 1 36 0 413 283 131 24 chr12 63957575 63957872 -80324617 - L1MC3 LINE L1 -1841 4699 4371 2550 65 0 0 chr12 63957875 63958184 -80324305 + AluY SINE Alu 3 311 0 23 0 0 0 chr12 63958211 63958234 -80324255 + AT_rich Low_complexity Low_complexity 1 23 0 751 159 0 0 chr12 63958385 63958517 -80323972 - L1MB1 LINE L1 -9 6159 6028 1268 159 25 29 chr12 63958517 63958762 -80323727 - Tigger1 DNA MER2_type -1153 1265 1022 453 329 81 30 chr12 63958762 63959055 -80323434 - L1MC3 LINE L1 -2980 3560 3246 2097 98 7 0 chr12 63959055 63959368 -80323121 + AluSc SINE Alu 1 315 0 453 329 81 30 chr12 63959368 63959407 -80323082 - L1MC3 LINE L1 -3294 3246 3210 389 273 55 16 chr12 63959710 63959893 -80322596 - L1MC3 LINE L1 -3725 2815 2626 297 243 0 18 chr12 63959927 63960038 -80322451 - L1MC3 LINE L1 -3962 2578 2470 792 256 61 20 chr12 63960179 63960425 -80322064 - MIR SINE MIR -1 261 6 382 268 76 13 chr12 63960619 63960776 -80321713 - HAL1 LINE L1 -845 1662 1496 203 290 81 0 chr12 63961743 63961805 -80320684 + L2 LINE L2 3179 3245 -68 4238 160 31 7 chr12 63961805 63962517 -80319972 - MER44D DNA MER2_type 0 605 5 213 225 0 0 chr12 63962534 63962574 -80319915 + L2 LINE L2 3259 3298 -15 416 272 82 0 chr12 63962599 63962746 -80319743 + L1ME LINE L1 5600 5758 -363 1363 155 4 50 chr12 63963738 63963977 -80318512 - MER46A DNA MER2_type 0 236 9 550 292 49 62 chr12 63963988 63964276 -80318213 + L2 LINE L2 3026 3309 -4 2251 125 0 0 chr12 63964826 63965131 -80317358 + AluSx SINE Alu 2 306 -6 2251 116 3 0 chr12 63965143 63965446 -80317043 + AluSx SINE Alu 1 304 -8 195 222 22 0 chr12 63966778 63966823 -80315666 - L3b LINE CR1 -87 1496 1451 672 296 56 6 chr12 63967578 63967740 -80314749 + MER91A DNA MER1_type 2 171 -25 585 230 198 32 chr12 63967956 63968143 -80314346 - MER20 DNA MER1_type 0 219 2 16194 141 27 13 chr12 63968314 63974860 -80307629 - L1MA3 LINE L1 0 7724 1099 692 141 41 8 chr12 63974857 63974978 -80307511 - L1MA3 LINE L1 -7432 133 9 * 339 219 41 0 chr12 63975542 63975615 -80306874 + MIR SINE MIR 63 138 -124 1000 123 49 12 chr12 63975615 63975777 -80306712 - MER1B DNA MER1_type 0 339 172 351 0 0 0 chr12 63976240 63976279 -80306210 + (CA)n Simple_repeat Simple_repeat 2 40 0 485 161 11 43 chr12 63976855 63976948 -80305541 - L1M1 LINE L1 -6067 1498 1409 26 50 0 0 chr12 63977536 63977576 -80304913 + AT_rich Low_complexity Low_complexity 1 40 0 31 0 0 0 chr12 63977789 63977820 -80304669 + AT_rich Low_complexity Low_complexity 1 31 0 1237 284 74 61 chr12 63978252 63979587 -80302902 + L1ME LINE L1 1332 2834 -4304 2330 144 26 18 chr12 63979618 63980070 -80302419 + L1MA5 LINE L1 5845 6300 0 2722 181 54 18 chr12 63980074 63980700 -80301789 + L1MD1 LINE L1 5594 6242 0 1028 271 37 12 chr12 63980714 63981117 -80301372 + L1ME LINE L1 2921 3333 -3624 * 4614 248 52 34 chr12 63981103 63981266 -80301223 + L1ME1 LINE L1 2103 2262 -3953 1998 174 119 9 chr12 63981266 63981721 -80300768 + MLT1D LTR MaLR 1 505 0 4614 248 52 34 chr12 63981721 63983515 -80298974 + L1ME1 LINE L1 2262 4058 -2157 1862 225 107 6 chr12 63983521 63983831 -80298658 + L1ME1 LINE L1 5087 5364 -871 2007 124 7 20 chr12 63983831 63984137 -80298352 + AluSx SINE Alu 6 307 -5 1862 225 107 6 chr12 63984137 63984645 -80297844 + L1ME1 LINE L1 5364 5965 -270 500 222 18 53 chr12 63984668 63984839 -80297650 + L1MA10 LINE L1 6169 6333 -1 2590 205 158 41 chr12 63984848 63985659 -80296830 + L1ME1 LINE L1 5254 6159 -7 188 267 27 53 chr12 63985663 63985738 -80296751 - L3 LINE CR1 -1193 384 312 3499 59 0 20 chr12 63988188 63988646 -80293843 + L1PA8 LINE L1 5714 6162 -10 240 255 0 0 chr12 63989037 63989084 -80293405 - L2 LINE L2 -3 3310 3264 361 265 61 14 chr12 63989239 63989386 -80293103 - L1MC4a LINE L1 -394 7414 7261 2230 96 3 7 chr12 63989444 63989736 -80292753 - AluSq SINE Alu -20 293 3 1200 102 0 0 chr12 63990061 63990243 -80292246 - AluSp SINE Alu 0 311 130 324 294 0 0 chr12 63990243 63990328 -80292161 - L1MC4 LINE L1 -1343 6699 6615 308 294 0 22 chr12 63990249 63990341 -80292148 + L1MC4 LINE L1 6614 6703 -1339 * 266 296 0 0 chr12 63990355 63990443 -80292046 + L1MC4 LINE L1 6616 6703 -1339 229 302 47 0 chr12 63990415 63990501 -80291988 - L1MC4 LINE L1 -1339 6703 6614 * 221 253 27 0 chr12 63990739 63990814 -80291675 + (TG)n Simple_repeat Simple_repeat 1 77 0 3760 71 30 0 chr12 63992392 63992898 -80289591 + L1PA10 LINE L1 5644 6164 -4 2152 128 0 22 chr12 63994326 63994645 -80287844 + AluJb SINE Alu 1 312 0 8461 148 30 28 chr12 63994648 63996715 -80285774 + L1MA9 LINE L1 3681 5743 -569 351 0 0 0 chr12 63996715 63996754 -80285735 + (CA)n Simple_repeat Simple_repeat 2 40 0 8461 148 30 28 chr12 63996754 63996773 -80285716 + L1MA9 LINE L1 5743 5760 -552 1969 148 3 0 chr12 63996773 63997064 -80285425 - AluSx SINE Alu -20 292 1 8461 148 30 28 chr12 63997064 63997459 -80285030 + L1MA9 LINE L1 5760 6183 -129 2468 68 0 10 chr12 63997459 63997768 -80284721 - AluY SINE Alu -5 306 1 8461 148 30 28 chr12 63997768 63997891 -80284598 + L1MA9 LINE L1 6183 6304 -8 390 42 0 0 chr12 63997972 63998020 -80284469 + (TG)n Simple_repeat Simple_repeat 1 48 0 225 154 0 0 chr12 63998352 63998391 -80284098 + GA-rich Low_complexity Low_complexity 2 40 0 2158 129 3 0 chr12 63998953 63999256 -80283233 + AluSp SINE Alu 1 304 -9 2202 101 0 11 chr12 64000034 64000371 -80282118 + AluSx SINE Alu 1 334 0 194 256 0 0 chr12 64001568 64001607 -80280882 - L2 LINE L2 -14 3258 3220 749 119 21 28 chr12 64002484 64002627 -80279862 + L1P5 LINE L1 5395 5536 -615 232 310 0 0 chr12 64002759 64002846 -80279643 + L1MC4 LINE L1 6615 6701 -1341 236 275 0 44 chr12 64002857 64002948 -80279541 + L1MC4 LINE L1 6615 6701 -1341 * 237 311 0 0 chr12 64002908 64002998 -80279491 - L1MC4 LINE L1 -1339 6703 6614 * 274 267 0 0 chr12 64002952 64003042 -80279447 + L1MC4 LINE L1 6614 6703 -1339 924 114 0 0 chr12 64003058 64003181 -80279308 - AluSp SINE Alu -190 123 1 239 196 18 0 chr12 64003290 64003346 -80279143 - L1ME LINE L1 -323 5798 5742 1683 185 7 7 chr12 64003990 64004293 -80278196 + AluJo SINE Alu 3 305 -7 626 268 104 13 chr12 64004329 64004560 -80277929 + MIR SINE MIR 9 260 -2 2122 124 10 0 chr12 64004737 64005027 -80277462 - AluSx SINE Alu -19 293 1 339 278 56 9 chr12 64005284 64005392 -80277097 + MIR SINE MIR 33 145 -63 2299 92 0 0 chr12 64006054 64006348 -80276141 + AluY SINE Alu 1 294 -17 1109 205 95 43 chr12 64006417 64006744 -80275745 + MER2 DNA MER2_type 1 344 0 2092 158 25 0 chr12 64007381 64007736 -80274753 + THE1B LTR MaLR 1 364 0 2124 141 0 0 chr12 64008318 64008630 -80273859 - AluJb SINE Alu 0 312 1 432 298 137 0 chr12 64009263 64009431 -80273058 + MIR SINE MIR 13 203 -59 257 267 27 0 chr12 64009435 64009510 -80272979 - MER69 DNA AcHobo -2 2524 2448 872 191 145 8 chr12 64009598 64009839 -80272650 - MER69 DNA AcHobo -215 2311 2038 * 910 273 233 5 chr12 64009832 64010206 -80272283 - MER69 DNA AcHobo -2064 462 4 1824 215 28 12 chr12 64010530 64010962 -80271527 - MER31A LTR ERV1 0 485 47 939 273 105 40 chr12 64010980 64011475 -80271014 - MLT1H1 LTR MaLR -18 537 11 766 222 160 13 chr12 64011686 64011911 -80270578 + MLT1H1 LTR MaLR 298 555 0 235 317 0 0 chr12 64012342 64012443 -80270046 + (TA)n Simple_repeat Simple_repeat 2 102 0 329 278 30 81 chr12 64013499 64013697 -80268792 - MLT1I LTR MaLR -107 302 115 2041 148 0 3 chr12 64013791 64014089 -80268400 + AluSx SINE Alu 1 297 -15 957 228 5 5 chr12 64015164 64015361 -80267128 - L1M4 LINE L1 -6309 233 37 31 58 0 0 chr12 64015515 64015567 -80266922 + AT_rich Low_complexity Low_complexity 1 52 0 317 391 25 5 chr12 64018244 64018441 -80264048 + L1 LINE L1 3490 3690 -2456 243 0 0 0 chr12 64018473 64018500 -80263989 + (A)n Simple_repeat Simple_repeat 1 27 0 1365 130 8 61 chr12 64018530 64018791 -80263698 + L1M3 LINE L1 5318 5564 -619 3094 266 74 19 chr12 64018795 64020085 -80262404 + L1MEc LINE L1 576 1936 -4460 3000 229 56 27 chr12 64020085 64021155 -80261334 + L1MEc LINE L1 3000 4124 -2091 2403 87 3 0 chr12 64021536 64021846 -80260643 + AluSq SINE Alu 1 311 -2 1232 247 110 61 chr12 64022455 64023308 -80259181 + L1MC5 LINE L1 6625 7519 -442 1308 201 91 28 chr12 64023492 64023810 -80258679 - MER2 DNA MER2_type 0 345 8 1250 264 128 22 chr12 64024476 64024977 -80257512 + MARNA DNA Mariner 14 567 -19 38 0 0 0 chr12 64026278 64026316 -80256173 + AT_rich Low_complexity Low_complexity 1 38 0 582 204 88 0 chr12 64026787 64026924 -80255565 - MER58C DNA MER1_type 0 215 67 951 171 7 0 chr12 64027051 64027203 -80255286 + AluJb SINE Alu 1 153 -159 2091 103 31 7 chr12 64027406 64027697 -80254792 - AluSx SINE Alu -14 298 1 3760 71 30 0 chr12 64028602 64029108 -80253381 + L1PA10 LINE L1 5644 6164 -4 2286 101 7 0 chr12 64030536 64030834 -80251655 + AluSx SINE Alu 1 300 -12 2009 94 4 0 chr12 64031610 64031866 -80250623 - AluSx SINE Alu -24 288 32 2236 111 0 7 chr12 64033008 64033305 -80249184 + AluSg SINE Alu 1 295 -15 357 190 76 0 chr12 64033377 64033456 -80249033 + L2 LINE L2 3225 3309 -4 836 118 69 0 chr12 64033671 64033815 -80248674 + L1MB1 LINE L1 6015 6168 0 215 163 11 65 chr12 64033819 64033911 -80248578 + (TATAA)n Simple_repeat Simple_repeat 4 90 0 192 364 36 18 chr12 64033923 64034033 -80248456 + MIR SINE MIR 37 148 -114 2139 121 0 0 chr12 64034680 64034970 -80247519 - AluSg SINE Alu -20 290 1 2271 74 3 3 chr12 64035223 64035543 -80246946 - AluSx SINE Alu 0 320 1 400 155 165 58 chr12 64035681 64035784 -80246705 + L2 LINE L2 3199 3312 -1 42700 51 2 0 chr12 64035975 64042113 -80240376 + L1PA4 LINE L1 2 6150 -5 21898 86 19 4 chr12 64042215 64044492 -80237997 + L1PA5 LINE L1 1 2337 -3809 216 0 0 0 chr12 64044492 64044516 -80237973 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21898 86 19 4 chr12 64044516 64045266 -80237223 + L1PA5 LINE L1 2337 3074 -3072 16900 62 0 2 chr12 64045267 64048259 -80234230 + L1PA5 LINE L1 3150 6154 0 207 350 90 45 chr12 64048472 64048649 -80233840 - L3 LINE CR1 -370 1207 1023 216 67 0 0 chr12 64048768 64048798 -80233691 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2273 57 0 40 chr12 64048802 64049099 -80233390 - AluY SINE Alu -26 285 1 1284 274 62 18 chr12 64049411 64050008 -80232481 - L1ME3A LINE L1 -219 5951 5293 437 223 132 25 chr12 64050008 64050129 -80232360 + L2 LINE L2 3180 3313 0 1217 304 102 16 chr12 64050134 64051200 -80231289 - L1ME3A LINE L1 -880 5266 4109 26 0 0 0 chr12 64051344 64051370 -80231119 + AT_rich Low_complexity Low_complexity 1 26 0 313 260 91 50 chr12 64051412 64051770 -80230719 - MLT1L LTR MaLR -4 611 137 233 216 0 0 chr12 64052574 64052625 -80229864 + L1MC4 LINE L1 6652 6702 -1340 567 352 176 28 chr12 64053171 64053983 -80228506 + L2 LINE L2 2045 2976 -338 223 346 0 13 chr12 64054052 64054130 -80228359 + L2 LINE L2 3145 3221 -51 189 0 0 0 chr12 64055311 64055332 -80227157 + (TAA)n Simple_repeat Simple_repeat 3 23 0 1012 77 0 0 chr12 64055332 64055462 -80227027 + L1PA5 LINE L1 5788 5917 -237 551 269 88 9 chr12 64055475 64055702 -80226787 + L1M4 LINE L1 4574 4818 -1328 528 210 25 25 chr12 64055743 64055835 -80226654 + L1MC/D LINE L1 180 274 -6266 1269 179 60 112 chr12 64055835 64056220 -80226269 + MLT1A1 LTR MaLR 1 365 0 528 210 25 25 chr12 64056220 64056246 -80226243 + L1MC/D LINE L1 273 298 -6242 1495 211 79 34 chr12 64056253 64056327 -80226162 + L1MC/D LINE L1 392 461 -6079 1800 105 0 4 chr12 64056327 64056566 -80225923 - AluSq SINE Alu -18 295 58 1495 211 79 34 chr12 64056566 64056898 -80225591 + L1MC/D LINE L1 461 1285 -5255 * 10599 206 14 28 chr12 64056889 64058777 -80223712 + L1PA15 LINE L1 2803 4647 -1499 186 43 0 0 chr12 64058777 64058800 -80223689 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 10599 206 14 28 chr12 64058800 64059473 -80223016 + L1PA15 LINE L1 4647 5328 -818 5329 130 19 5 chr12 64060005 64060842 -80221647 + L1PA15 LINE L1 5317 6165 0 2965 190 112 87 chr12 64060831 64061176 -80221313 + L1MC/D LINE L1 1259 1594 -4946 * 1585 167 52 7 chr12 64061176 64061494 -80220995 + AluJo SINE Alu 1 312 0 2965 190 112 87 chr12 64061494 64062811 -80219678 + L1MC/D LINE L1 1594 2957 -3583 1159 193 49 5 chr12 64062906 64063247 -80219242 + L1MC/D LINE L1 5568 5918 -718 258 174 87 29 chr12 64063311 64063380 -80219109 - L2 LINE L2 -1 3312 3240 232 275 55 0 chr12 64063409 64063500 -80218989 - L2 LINE L2 -1916 1398 1303 484 180 31 108 chr12 64063891 64064085 -80218404 - L1MCc LINE L1 -6221 202 24 707 267 35 17 chr12 64064096 64064268 -80218221 + L2 LINE L2 1122 1296 -2018 383 215 76 0 chr12 64064276 64064355 -80218134 - MER58B DNA MER1_type -1 340 256 1794 248 85 91 chr12 64064425 64066018 -80216471 - L1MCa LINE L1 -4851 1194 12 275 142 34 115 chr12 64066042 64066110 -80216379 - L1M4 LINE L1 -863 5283 5238 2159 120 3 0 chr12 64066110 64066409 -80216080 + AluSx SINE Alu 1 300 -12 275 142 34 115 chr12 64066409 64066457 -80216032 - L1M4 LINE L1 -908 5238 5188 426 335 49 0 chr12 64066472 64066657 -80215832 + MER74B LTR ERVL 379 572 -50 639 247 54 77 chr12 64066707 64066966 -80215523 + L1ME1 LINE L1 5909 6161 -5 1675 226 157 18 chr12 64067000 64067619 -80214870 + L1ME LINE L1 4190 4894 -1252 554 283 48 6 chr12 64067609 64067775 -80214714 + L1ME1 LINE L1 5989 6161 -5 * 463 311 94 18 chr12 64067789 64068171 -80214318 + L1ME LINE L1 5329 5739 -431 30 0 0 0 chr12 64068429 64068459 -80214030 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr12 64069412 64069442 -80213047 + AT_rich Low_complexity Low_complexity 1 30 0 383 346 78 0 chr12 64070420 64070625 -80211864 - MIR SINE MIR -21 241 21 23 0 0 0 chr12 64070640 64070663 -80211826 + AT_rich Low_complexity Low_complexity 1 23 0 689 153 35 59 chr12 64070828 64070998 -80211491 + L1MB4 LINE L1 6009 6174 -6 209 337 22 11 chr12 64071129 64071221 -80211268 - MIR SINE MIR -60 202 110 23 0 0 0 chr12 64071221 64071244 -80211245 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 64071903 64071932 -80210557 + AT_rich Low_complexity Low_complexity 1 29 0 2029 144 0 3 chr12 64072022 64072320 -80210169 + AluSx SINE Alu 1 297 -15 957 228 5 5 chr12 64073397 64073594 -80208895 - L1M4 LINE L1 -6309 233 37 31 58 0 0 chr12 64073748 64073800 -80208689 + AT_rich Low_complexity Low_complexity 1 52 0 313 268 186 68 chr12 64075492 64075831 -80206658 + L1M2 LINE L1 370 748 -6101 21 36 0 0 chr12 64075988 64076016 -80206473 + GC_rich Low_complexity Low_complexity 1 28 0 489 250 117 16 chr12 64077375 64077563 -80204926 + L1ME4a LINE L1 5688 5894 -227 428 262 131 12 chr12 64077655 64077823 -80204666 + MIR SINE MIR 74 261 -1 263 152 0 0 chr12 64077863 64077909 -80204580 + MADE1 DNA Mariner 1 46 -34 6334 32 1 0 chr12 64078382 64079163 -80203326 - L1PA5 LINE L1 -8 6146 5365 1718 168 42 0 chr12 64079172 64079457 -80203032 - AluJo SINE Alu -15 297 1 1672 71 8 17 chr12 64081285 64081525 -80200964 - MER75B DNA T2_type -3 240 3 230 281 53 53 chr12 64081680 64081794 -80200695 + MIR3 SINE MIR 64 177 -31 3066 164 44 7 chr12 64082563 64083173 -80199316 - L1MB8 LINE L1 -125 6053 5421 5067 179 60 16 chr12 64083183 64085142 -80197347 - L1MC2 LINE L1 -25 6319 4280 652 265 75 32 chr12 64085206 64085618 -80196871 + L1MC4a LINE L1 6159 6588 -1220 792 245 73 32 chr12 64085646 64085960 -80196529 + L1MC4 LINE L1 7572 7898 -144 306 305 17 8 chr12 64086032 64086150 -80196339 + L1MC4 LINE L1 7924 8042 0 281 120 65 98 chr12 64086196 64086288 -80196201 + L3 LINE CR1 1219 1307 -270 2306 113 0 0 chr12 64088416 64088717 -80193772 + AluSc SINE Alu 1 301 -8 387 156 0 0 chr12 64092408 64092472 -80190017 - MER8 DNA MER2_type 0 239 176 * 2328 135 56 7 chr12 64092461 64092892 -80189597 + Tigger2 DNA MER2_type 2267 2718 0 222 37 0 0 chr12 64092929 64092956 -80189533 + (TCTCCC)n Simple_repeat Simple_repeat 2 28 0 10986 48 2 64 chr12 64092956 64094434 -80188055 + SVA Other Other 1 1386 0 235 118 20 20 chr12 64094434 64094485 -80188004 + L1PB2 LINE L1 6093 6143 -8 29 28 0 0 chr12 64094485 64094521 -80187968 + AT_rich Low_complexity Low_complexity 1 36 0 229 306 22 45 chr12 64094839 64094973 -80187516 - MIR SINE MIR -58 150 20 23 0 0 0 chr12 64096044 64096067 -80186422 + AT_rich Low_complexity Low_complexity 1 23 0 391 252 26 0 chr12 64096634 64096749 -80185740 + L1MC4a LINE L1 5806 5923 -1885 445 210 0 96 chr12 64096950 64097016 -80185473 - L1MA10 LINE L1 -7 6327 5962 1991 120 10 10 chr12 64097016 64097316 -80185173 + AluSq SINE Alu 1 300 -13 1995 237 82 17 chr12 64097316 64099210 -80183279 - L1ME1 LINE L1 -50 6116 4021 2400 85 3 0 chr12 64099210 64099517 -80182972 + AluSp SINE Alu 2 309 -4 1995 237 82 17 chr12 64099517 64099961 -80182528 - L1ME1 LINE L1 -2145 4021 3607 815 191 31 63 chr12 64101138 64101411 -80181078 + MLT2A2 LTR ERVL 273 453 0 2945 165 24 0 chr12 64101411 64101951 -80180538 + L1MB2 LINE L1 5580 6132 -39 572 40 13 0 chr12 64101951 64102026 -80180463 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 1833 130 3 85 chr12 64102095 64102426 -80180063 + AluSx SINE Alu 1 304 -8 284 211 54 54 chr12 64102505 64102671 -80179818 + L1M4 LINE L1 5112 5277 -869 866 71 14 7 chr12 64102671 64102811 -80179678 + L1P LINE L1 3 143 -6003 204 40 0 0 chr12 64103076 64103101 -80179388 + (TTTAA)n Simple_repeat Simple_repeat 1 25 0 361 234 113 4 chr12 64103541 64103688 -80178801 - MIR SINE MIR -62 146 3 26 104 0 0 chr12 64104485 64104581 -80177908 + AT_rich Low_complexity Low_complexity 1 96 0 206 275 53 6 chr12 64104662 64104833 -80177656 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 23 33 0 0 chr12 64104840 64104870 -80177619 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 64105069 64105090 -80177399 + AT_rich Low_complexity Low_complexity 1 21 0 947 217 110 48 chr12 64105539 64106006 -80176483 + MER39 LTR ERV1 9 707 0 817 200 25 133 chr12 64106560 64106920 -80175569 + LTR37A LTR ERV1 95 415 -11 2537 160 46 2 chr12 64107382 64107820 -80174669 - MSTB2 LTR MaLR 0 457 1 20702 79 2 5 chr12 64108134 64111042 -80171447 - L1P LINE L1 -3237 2909 11 28 0 0 0 chr12 64112182 64112210 -80170279 + AT_rich Low_complexity Low_complexity 1 28 0 1189 276 58 11 chr12 64113826 64114207 -80168282 - MLT1I LTR MaLR 0 409 11 728 263 111 45 chr12 64114990 64115370 -80167119 - MLT1J2 LTR MaLR 0 450 46 565 311 81 26 chr12 64115656 64116078 -80166411 - MLT1K LTR MaLR 0 588 99 7329 46 0 3 chr12 64116422 64117529 -80164960 - L1PA5 LINE L1 -2 6152 5045 2574 112 0 8 chr12 64117705 64118081 -80164408 + THE1C LTR MaLR 1 373 -2 8026 103 122 54 chr12 64118083 64118596 -80163893 + THE1C-int LTR MaLR 1 478 -1102 2281 118 0 3 chr12 64118596 64118909 -80163580 + AluSx SINE Alu 1 312 0 8026 103 122 54 chr12 64118909 64119875 -80162614 + THE1C-int LTR MaLR 478 1580 0 2494 126 11 5 chr12 64119875 64120248 -80162241 + THE1C LTR MaLR 1 375 0 643 275 108 31 chr12 64120569 64120893 -80161596 + MLT1G LTR MaLR 28 376 -214 289 167 97 70 chr12 64120919 64121033 -80161456 + MLT1G LTR MaLR 395 511 -19 1824 99 52 151 chr12 64121046 64121450 -80161039 + THE1B LTR MaLR 1 364 0 11160 102 25 1 chr12 64121450 64122994 -80159495 + THE1B-int LTR MaLR 1 1580 0 2034 131 32 67 chr12 64122996 64123371 -80159118 + THE1B LTR MaLR 3 364 0 32 81 0 0 chr12 64123908 64123982 -80158507 + AT_rich Low_complexity Low_complexity 1 74 0 218 310 52 69 chr12 64124612 64124728 -80157761 + MIR3 SINE MIR 86 199 -9 416 307 58 60 chr12 64125130 64125511 -80156978 - L2 LINE L2 -374 2940 2561 270 336 50 43 chr12 64125620 64125760 -80156729 - MIR3 SINE MIR -22 186 46 5390 112 7 8 chr12 64126266 64127958 -80154531 - L1PA15 LINE L1 -13 6152 4480 322 315 46 0 chr12 64128497 64128605 -80153884 + MIR SINE MIR 30 142 -66 5579 155 12 25 chr12 64129100 64130137 -80152352 - L1MA7 LINE L1 -5 6286 5264 277 119 0 0 chr12 64130160 64130202 -80152287 - L1MA7 LINE L1 -1063 5083 5042 * 4399 186 88 77 chr12 64130200 64131297 -80151192 - L1 LINE L1 -1299 4847 3775 222 37 0 0 chr12 64131297 64131324 -80151165 + (TG)n Simple_repeat Simple_repeat 2 28 0 4399 186 88 77 chr12 64131324 64132269 -80150220 - L1 LINE L1 -2371 3775 2842 14297 34 7 1 chr12 64132269 64134762 -80147727 + L1PA4 LINE L1 3659 6155 0 355 200 0 0 chr12 64136500 64136560 -80145929 + MER5B DNA MER1_type 3 62 -116 239 139 0 0 chr12 64136554 64136590 -80145899 - MER5B DNA MER1_type -139 39 4 * 1897 114 0 66 chr12 64136749 64137066 -80145423 - AluSx SINE Alu -14 298 3 2028 149 3 0 chr12 64137725 64138033 -80144456 + AluSx SINE Alu 1 309 -3 375 340 45 8 chr12 64138325 64138569 -80143920 + HAL1 LINE L1 1394 1646 -861 30981 121 21 20 chr12 64138876 64144995 -80137494 + L1PA6 LINE L1 12 6135 -19 180 0 0 0 chr12 64144995 64145015 -80137474 + (TA)n Simple_repeat Simple_repeat 1 20 0 2958 63 8 0 chr12 64145015 64145398 -80137091 + L1PA7 LINE L1 5769 6154 0 304 257 114 46 chr12 64145714 64145889 -80136600 + L1ME LINE L1 2425 2611 -3535 376 272 60 48 chr12 64145947 64146263 -80136226 + L1ME LINE L1 2699 3018 -3128 316 222 101 0 chr12 64146268 64146367 -80136122 + L1ME LINE L1 3205 3313 -2833 357 351 70 0 chr12 64146533 64146718 -80135771 + L1ME LINE L1 4616 4813 -1333 1115 145 0 11 chr12 64146719 64146898 -80135591 - AluSg/x SINE Alu -2 310 134 2324 96 0 7 chr12 64146898 64147201 -80135288 - AluY SINE Alu -9 302 2 411 327 98 36 chr12 64147203 64147539 -80134950 + L1ME LINE L1 4802 5158 -988 615 327 69 5 chr12 64147630 64148009 -80134480 + L1ME LINE L1 5258 5660 -502 400 150 200 10 chr12 64148559 64148659 -80133830 - LTR67 LTR ERVL -11 546 428 400 302 188 5 chr12 64151400 64151602 -80130887 + MIR SINE MIR 24 262 0 321 334 251 25 chr12 64152378 64152614 -80129875 + L3 LINE CR1 712 894 -683 1638 193 83 46 chr12 64152614 64153095 -80129394 + MLT1D LTR MaLR 3 501 -4 321 334 251 25 chr12 64153095 64153373 -80129116 + L3 LINE CR1 894 1342 -235 261 243 47 75 chr12 64153376 64153483 -80129006 + L2 LINE L2 3158 3261 -52 1085 278 67 35 chr12 64153543 64154032 -80128457 - MLT1J LTR MaLR 0 466 7 26 50 0 0 chr12 64154310 64154350 -80128139 + AT_rich Low_complexity Low_complexity 1 40 0 1844 131 75 34 chr12 64154546 64154904 -80127585 - THE1C LTR MaLR 0 375 3 263 256 47 62 chr12 64155067 64155196 -80127293 + L2 LINE L2 2508 2634 -680 874 241 79 34 chr12 64155342 64155633 -80126856 + L2 LINE L2 2504 2807 -507 2016 208 41 46 chr12 64155634 64156173 -80126316 - MLT1F LTR MaLR 0 542 7 488 268 123 66 chr12 64156173 64156345 -80126144 + L2 LINE L2 2831 3029 -284 1540 99 40 5 chr12 64156345 64156567 -80125922 - MER30 DNA MER1_type 0 230 1 488 268 123 66 chr12 64156567 64156696 -80125793 + L2 LINE L2 3029 3149 -164 761 121 107 141 chr12 64156774 64156980 -80125509 - L1PA15 LINE L1 -13 6152 5954 370 187 40 0 chr12 64157007 64157082 -80125407 + L2 LINE L2 3236 3313 0 219 200 15 31 chr12 64158235 64158300 -80124189 + GA-rich Low_complexity Low_complexity 3 66 0 2076 158 13 37 chr12 64158689 64159063 -80123426 + MLT1A1 LTR MaLR 1 365 0 288 322 91 8 chr12 64160778 64160899 -80121590 + MIR SINE MIR 45 175 -87 211 309 62 52 chr12 64161247 64161344 -80121145 + MIR SINE MIR 20 117 -145 2568 59 0 0 chr12 64161688 64161992 -80120497 - AluY SINE Alu -7 304 1 670 241 191 38 chr12 64163037 64163486 -80119003 - L1ME4a LINE L1 -2 6119 5602 1964 146 0 3 chr12 64163641 64163936 -80118553 + AluSx SINE Alu 1 294 -18 570 340 9 47 chr12 64164572 64164804 -80117685 + MIR SINE MIR 15 237 -25 22 0 0 0 chr12 64166377 64166399 -80116090 + AT_rich Low_complexity Low_complexity 1 22 0 29 70 0 0 chr12 64166453 64166510 -80115979 + AT_rich Low_complexity Low_complexity 1 57 0 190 312 56 40 chr12 64167169 64167294 -80115195 + MER5B DNA MER1_type 42 168 -10 202 116 47 0 chr12 64167976 64168019 -80114470 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 2667 31 0 22 chr12 64168070 64168388 -80114101 + AluY SINE Alu 1 311 0 1048 109 63 0 chr12 64169955 64170130 -80112359 - L1MA9 LINE L1 -6 6306 6121 528 189 32 0 chr12 64170380 64170475 -80112014 + MER3 DNA MER1_type 27 124 -85 264 226 36 0 chr12 64170483 64170567 -80111922 + L1ME1 LINE L1 4408 4494 -1652 * 2715 205 30 30 chr12 64170540 64170627 -80111862 + L1ME1 LINE L1 5178 5263 -903 2014 117 7 11 chr12 64170627 64170942 -80111547 + AluSx SINE Alu 3 316 0 2715 205 30 30 chr12 64170942 64171551 -80110938 + L1ME1 LINE L1 5263 5870 -296 28 48 0 0 chr12 64172557 64172599 -80109890 + AT_rich Low_complexity Low_complexity 1 42 0 4883 111 6 3 chr12 64173018 64173742 -80108747 + L1PA15 LINE L1 5440 6165 0 1882 132 0 24 chr12 64174462 64174815 -80107674 - AluJb SINE Alu 0 346 1 202 239 0 0 chr12 64175193 64175239 -80107250 + T-rich Low_complexity Low_complexity 1 46 0 336 338 121 17 chr12 64175243 64175589 -80106900 + L2 LINE L2 2377 2758 -556 2110 117 0 0 chr12 64175613 64175921 -80106568 - AluSx SINE Alu 0 308 1 1963 117 6 22 chr12 64175973 64176323 -80106166 - MER4A LTR ERV1 -1 663 261 696 92 10 10 chr12 64176323 64176421 -80106068 - MER4A LTR ERV1 -566 98 1 248 321 111 6 chr12 64176611 64176773 -80105716 + L2 LINE L2 3123 3301 -12 207 291 139 0 chr12 64177084 64177163 -80105326 - MIR3 SINE MIR -22 186 97 263 56 0 0 chr12 64177165 64177201 -80105288 - L1MA9 LINE L1 0 6312 6277 314 269 16 0 chr12 64177203 64177276 -80105213 - MIR SINE MIR -107 101 34 21 0 0 0 chr12 64177487 64177508 -80104981 + AT_rich Low_complexity Low_complexity 1 21 0 816 156 8 0 chr12 64177895 64178023 -80104466 - FLAM_C SINE Alu -4 129 1 25 51 0 0 chr12 64178295 64178334 -80104155 + AT_rich Low_complexity Low_complexity 1 39 0 2117 278 145 28 chr12 64178534 64179596 -80102893 + L2 LINE L2 2118 3312 -1 714 255 239 22 chr12 64180195 64180509 -80101980 + L2 LINE L2 65 446 -2868 2705 252 114 12 chr12 64180515 64181609 -80100880 - L1M4c LINE L1 -3973 2411 1174 257 0 30 0 chr12 64181609 64181642 -80100847 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2705 252 114 12 chr12 64181642 64181787 -80100702 - L1M4c LINE L1 -5210 1174 1045 1358 238 39 1 chr12 64182105 64182536 -80099953 + L1ME1 LINE L1 5728 6184 0 26473 61 5 0 chr12 64182649 64186198 -80096291 + L1P LINE L1 22 3586 -2560 4203 103 8 5 chr12 64186328 64186997 -80095492 - L1P LINE L1 -2371 3775 3105 8183 149 102 91 chr12 64186999 64189262 -80093227 - L1P LINE L1 -3846 2300 12 261 229 0 29 chr12 64191222 64191292 -80091197 - MIR SINE MIR -95 167 100 33 56 0 0 chr12 64191679 64191733 -80090756 + AT_rich Low_complexity Low_complexity 1 54 0 2525 82 14 16 chr12 64192017 64192382 -80090107 + L1PA11 LINE L1 5801 6164 -10 2239 237 74 33 chr12 64192397 64193061 -80089428 - L1ME2 LINE L1 -133 6100 5372 270 0 0 0 chr12 64193061 64193091 -80089398 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2239 237 74 33 chr12 64193091 64193622 -80088867 - L1ME2 LINE L1 -861 5372 4864 1601 258 78 53 chr12 64193642 64195140 -80087349 - L1ME2 LINE L1 -3261 2954 1477 380 367 19 5 chr12 64195164 64195374 -80087115 - L1ME2 LINE L1 -6017 379 167 17674 126 4 4 chr12 64195803 64198740 -80083749 + L1PA7 LINE L1 1294 4232 -1914 6856 58 11 1 chr12 64198740 64200380 -80082109 + L1PA7 LINE L1 4508 6154 0 22 35 0 0 chr12 64200502 64200531 -80081958 + AT_rich Low_complexity Low_complexity 1 29 0 273 119 0 0 chr12 64200866 64200908 -80081581 + (TC)n Simple_repeat Simple_repeat 1 42 0 207 347 0 0 chr12 64202357 64202432 -80080057 + L2 LINE L2 249 323 -2991 873 215 83 63 chr12 64202482 64202871 -80079618 - MLT2C2 LTR ERVL 0 464 68 1058 143 11 0 chr12 64202879 64203061 -80079428 - ERVL-C2 LTR ERVL -2 5762 5579 2875 145 0 5 chr12 64203071 64203520 -80078969 - ERVL-C2 LTR ERVL -977 4787 4341 242 362 85 23 chr12 64203746 64203923 -80078566 + L2 LINE L2 2664 2851 -463 415 335 58 86 chr12 64203987 64204300 -80078189 + L2 LINE L2 2933 3236 -36 4232 135 57 10 chr12 64204609 64205299 -80077190 - MER72 LTR ERV1 0 722 1 1446 188 72 15 chr12 64205411 64205804 -80076685 + LTR47A LTR ERVL 1 449 -3 525 254 127 0 chr12 64205806 64205979 -80076510 + L1ME3A LINE L1 5957 6151 -19 654 290 71 35 chr12 64206002 64206509 -80075980 + L1ME3A LINE L1 5423 5947 -223 843 171 0 0 chr12 64206922 64207068 -80075421 - FRAM SINE Alu -20 156 11 916 83 0 127 chr12 64207293 64207474 -80075015 + MER51B LTR ERV1 1 158 -219 * 1836 139 7 0 chr12 64207446 64207747 -80074742 + MER51B LTR ERV1 75 377 0 266 211 0 0 chr12 64208255 64208307 -80074182 - MER112 DNA MER1_type -110 150 99 425 19 19 0 chr12 64208307 64208361 -80074128 + (TG)n Simple_repeat Simple_repeat 2 56 0 2019 138 0 10 chr12 64208621 64208919 -80073570 - AluSx SINE Alu -17 295 1 195 42 0 0 chr12 64208967 64208991 -80073498 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 311 316 53 9 chr12 64209551 64209665 -80072824 + MIR3 SINE MIR 78 196 -12 344 281 133 58 chr12 64210391 64210792 -80071697 + L1MC4a LINE L1 5291 5747 -2061 195 100 0 0 chr12 64210792 64210822 -80071667 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 344 281 133 58 chr12 64210822 64210975 -80071514 + L1MC4a LINE L1 5747 5887 -1921 195 153 0 51 chr12 64211208 64211267 -80071222 + GA-rich Low_complexity Low_complexity 5 60 0 462 286 95 75 chr12 64211382 64211524 -80070965 + MIR SINE MIR 3 154 -108 1887 112 27 24 chr12 64211524 64211820 -80070669 + AluY SINE Alu 1 297 -14 462 286 95 75 chr12 64211820 64211929 -80070560 + MIR SINE MIR 154 259 -3 262 356 147 5 chr12 64212257 64212448 -80070041 + MIR SINE MIR 45 262 0 23 0 0 0 chr12 64212483 64212506 -80069983 + AT_rich Low_complexity Low_complexity 1 23 0 197 367 0 44 chr12 64212561 64212651 -80069838 + MIR SINE MIR 25 110 -98 957 176 34 102 chr12 64213365 64213660 -80068829 - MLT1A1 LTR MaLR -11 354 80 358 177 152 0 chr12 64214176 64214255 -80068234 - MLT1A1 LTR MaLR -274 91 1 4356 54 9 2 chr12 64214605 64215162 -80067327 - L1PA7 LINE L1 -2 6152 5592 323 275 75 50 chr12 64215163 64215323 -80067166 + L1ME LINE L1 5609 5772 -398 1069 143 6 11 chr12 64215325 64215657 -80066832 + HERVL18 LTR ERVL 1419 1810 -4237 1268 114 302 8 chr12 64215659 64215914 -80066575 + HERVL18 LTR ERVL 2123 2452 -3595 * 5198 140 4 14 chr12 64215913 64216629 -80065860 + HERVL18 LTR ERVL 2720 3427 -2620 3998 91 14 69 chr12 64216629 64217270 -80065219 - LTR14B LTR ERVK 0 608 3 5198 140 4 14 chr12 64217270 64217396 -80065093 + HERVL18 LTR ERVL 3427 3553 -2494 1012 191 33 0 chr12 64217389 64217572 -80064917 + HERVL18 LTR ERVL 4264 4452 -1595 * 762 213 0 19 chr12 64217552 64217707 -80064782 + HERVL18 LTR ERVL 5116 5267 -780 * 497 226 0 0 chr12 64217707 64217809 -80064680 + HERVL18 LTR ERVL 5946 6047 0 1409 201 201 27 chr12 64218375 64218898 -80063591 + LTR18B LTR ERVL 1 614 0 272 330 0 0 chr12 64220797 64220894 -80061595 - HERVR LTR ERV1 -3216 4176 4080 1295 278 48 11 chr12 64221906 64222345 -80060144 - HERVR LTR ERV1 -4064 583 129 228 176 20 0 chr12 64223043 64223094 -80059395 + T-rich Low_complexity Low_complexity 1 52 0 290 204 86 32 chr12 64223863 64223956 -80058533 - LTR26E LTR ERV1 -37 585 488 407 209 64 120 chr12 64223974 64224208 -80058281 - LTR8A LTR ERV1 -217 510 290 2455 161 24 0 chr12 64224254 64224671 -80057818 - MSTA LTR MaLR 0 428 2 310 254 61 18 chr12 64224809 64224923 -80057566 - LTR8 LTR ERV1 -572 119 1 2022 152 128 8 chr12 64225068 64225450 -80057039 - MSTA LTR MaLR 0 428 1 2141 213 27 31 chr12 64225772 64226573 -80055916 - MER4D-int LTR ERV1 -5911 847 10 1719 188 14 20 chr12 64226581 64226938 -80055551 - MER4D LTR ERV1 -2 901 547 687 165 0 65 chr12 64226940 64227125 -80055364 - MER4E LTR ERV1 -592 280 1 1101 112 61 0 chr12 64227125 64227321 -80055168 + LTR54 LTR ERV1 303 510 0 625 217 12 124 chr12 64227321 64227578 -80054911 + MER39 LTR ERV1 455 682 -25 591 159 61 8 chr12 64227585 64227717 -80054772 + MER34C LTR ERV1 447 585 0 797 167 19 25 chr12 64228329 64228491 -80053998 - MER4B-int LTR ERV1 -6591 167 7 205 161 0 0 chr12 64229511 64229542 -80052947 + (CA)n Simple_repeat Simple_repeat 2 32 0 261 275 85 16 chr12 64229598 64229787 -80052702 - L1M4 LINE L1 -2685 3461 3260 6556 139 12 12 chr12 64229799 64231963 -80050526 - L1MA2 LINE L1 0 6304 4138 885 263 56 11 chr12 64231961 64232406 -80050083 - L1M4 LINE L1 -2877 3269 2805 * 3056 114 68 12 chr12 64232463 64232981 -80049508 + LTR10A LTR ERV1 1 547 -62 1081 232 28 14 chr12 64232991 64233276 -80049213 + LTR10A-int LTR ERV1 1 289 -6360 2181 118 72 10 chr12 64233420 64233809 -80048680 + LTR10A-int LTR ERV1 609 1021 -5628 * 4179 93 9 3 chr12 64233792 64234424 -80048065 + LTR10A-int LTR ERV1 1233 1868 -4781 573 128 0 0 chr12 64234467 64234569 -80047920 + (GA)n Simple_repeat Simple_repeat 2 103 0 268 191 79 0 chr12 64234570 64234659 -80047830 + LTR10A-int LTR ERV1 1849 1944 -4705 * 2871 180 16 6 chr12 64234647 64235359 -80047130 + LTR10A-int LTR ERV1 2202 2686 -3963 1959 197 30 40 chr12 64235339 64236018 -80046471 + LTR10A-int LTR ERV1 956 4119 -3666 * 1369 164 67 0 chr12 64236366 64236635 -80045854 - MER34C LTR ERV1 -3 582 296 278 293 116 23 chr12 64236636 64236851 -80045638 + LTR10A LTR ERV1 1 235 -374 1695 135 66 50 chr12 64236853 64237215 -80045274 + LTR10A LTR ERV1 181 548 -61 1637 114 12 0 chr12 64237232 64237487 -80045002 - MER34C LTR ERV1 -291 294 37 1507 209 65 61 chr12 64237792 64238307 -80044182 - LTR55 LTR ERV -5 543 24 1842 169 87 6 chr12 64238307 64238673 -80043816 - MSTD LTR MaLR 0 396 1 1507 209 65 61 chr12 64238673 64238698 -80043791 - LTR55 LTR ERV -524 24 1 377 320 27 14 chr12 64238866 64239013 -80043476 + MIR SINE MIR 83 231 -31 571 242 47 42 chr12 64239767 64239957 -80042532 - L2 LINE L2 0 3313 3123 947 312 39 68 chr12 64242236 64243094 -80039395 - L2 LINE L2 -31 3282 2449 2112 152 25 3 chr12 64243706 64244062 -80038427 - THE1B LTR MaLR 0 364 1 9409 104 37 53 chr12 64244062 64244752 -80037737 - THE1B-int LTR MaLR 0 1580 880 2679 89 0 8 chr12 64244752 64245110 -80037379 + THE1A LTR MaLR 1 355 0 9409 104 37 53 chr12 64245110 64246025 -80036464 - THE1B-int LTR MaLR -700 880 1 2391 148 3 3 chr12 64246025 64246389 -80036100 - THE1B LTR MaLR 0 364 1 278 216 284 0 chr12 64247864 64247966 -80034523 - MIR SINE MIR -83 179 49 247 253 32 84 chr12 64248030 64248125 -80034364 + MIR SINE MIR 17 106 -156 39 38 0 0 chr12 64248735 64248788 -80033701 + AT_rich Low_complexity Low_complexity 1 53 0 398 214 188 0 chr12 64248791 64248908 -80033581 - MIR SINE MIR -53 209 71 22 0 0 0 chr12 64249041 64249063 -80033426 + AT_rich Low_complexity Low_complexity 1 22 0 2076 122 3 0 chr12 64249088 64249375 -80033114 + AluSx SINE Alu 9 296 -16 180 0 0 0 chr12 64249375 64249395 -80033094 + (TA)n Simple_repeat Simple_repeat 2 21 0 256 164 30 0 chr12 64249431 64249498 -80032991 + (TA)n Simple_repeat Simple_repeat 2 70 0 254 287 171 24 chr12 64249706 64250194 -80032295 + L1MC/D LINE L1 5284 5823 -719 2590 130 84 27 chr12 64251077 64251553 -80030936 + Tigger1 DNA MER2_type 26 528 -1890 608 161 0 140 chr12 64251557 64251700 -80030789 + FLAM_C SINE Alu 1 123 -20 16907 69 5 0 chr12 64251702 64254010 -80028479 + L1P LINE L1 10 2327 -3819 8939 35 3 3 chr12 64254007 64255172 -80027317 + L1P LINE L1 4179 5343 -803 * 630 256 0 0 chr12 64255296 64255476 -80027013 + (TA)n Simple_repeat Simple_repeat 1 180 0 256 267 0 0 chr12 64255489 64255579 -80026910 + L1MC4 LINE L1 6614 6703 -1339 931 114 0 0 chr12 64255595 64255718 -80026771 - AluSp SINE Alu -190 123 1 1708 185 7 7 chr12 64256527 64256830 -80025659 + AluJo SINE Alu 3 305 -7 622 268 104 13 chr12 64256866 64257097 -80025392 + MIR SINE MIR 9 260 -2 2141 124 10 0 chr12 64257274 64257564 -80024925 - AluSx SINE Alu -19 293 1 346 278 56 9 chr12 64257821 64257929 -80024560 + MIR SINE MIR 33 145 -63 2304 92 0 0 chr12 64258591 64258885 -80023604 + AluY SINE Alu 1 294 -17 1091 205 95 43 chr12 64258954 64259281 -80023208 + MER2 DNA MER2_type 1 344 0 2094 147 31 6 chr12 64259918 64260273 -80022216 + THE1B LTR MaLR 1 364 0 2156 141 0 0 chr12 64260855 64261167 -80021322 - AluJb SINE Alu 0 312 1 431 298 137 0 chr12 64261800 64261968 -80020521 + MIR SINE MIR 13 203 -59 235 267 27 0 chr12 64261972 64262047 -80020442 - MER69 DNA AcHobo -2 2524 2448 804 191 145 8 chr12 64262135 64262376 -80020113 - MER69 DNA AcHobo -215 2311 2038 787 273 233 5 chr12 64262369 64262743 -80019746 - MER69 DNA AcHobo -2064 462 4 * 1704 202 24 12 chr12 64263067 64263478 -80019011 - MER31A LTR ERV1 0 485 70 785 271 106 41 chr12 64263520 64264011 -80018478 - MLT1H1 LTR MaLR -22 533 11 695 227 160 13 chr12 64264222 64264447 -80018042 + MLT1H1 LTR MaLR 298 555 0 235 317 0 0 chr12 64264878 64264979 -80017510 + (TA)n Simple_repeat Simple_repeat 2 102 0 300 314 22 43 chr12 64266048 64266233 -80016256 - MLT1I LTR MaLR -114 295 115 2206 132 3 0 chr12 64266327 64266638 -80015851 + AluSx SINE Alu 1 312 0 474 274 16 32 chr12 64266728 64266852 -80015637 - L2 LINE L2 -1 3312 3191 1576 77 73 0 chr12 64267183 64267431 -80015058 + L1MA2 LINE L1 6039 6304 0 510 307 23 17 chr12 64267560 64267736 -80014753 - L2 LINE L2 0 3313 3137 492 296 77 43 chr12 64267845 64267993 -80014496 - LTR33 LTR ERVL -112 409 267 2163 98 3 72 chr12 64267993 64268328 -80014161 + AluSx SINE Alu 1 312 0 492 296 77 43 chr12 64268328 64268571 -80013918 - LTR33 LTR ERVL -254 267 5 489 273 121 31 chr12 64268573 64268829 -80013660 - L2 LINE L2 -168 3145 2867 2517 179 25 72 chr12 64269026 64269668 -80012821 - LTR9 LTR ERV1 0 612 1 1899 125 49 7 chr12 64269821 64270109 -80012380 - AluSq SINE Alu -13 300 1 463 143 0 0 chr12 64271432 64271502 -80010987 + AluS SINE Alu 1 70 -242 832 142 0 8 chr12 64271502 64271629 -80010860 + AluSg/x SINE Alu 174 299 -13 1117 215 40 94 chr12 64271746 64272193 -80010296 + MLT2B1 LTR ERVL 20 442 -78 306 194 0 0 chr12 64272201 64272263 -80010226 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 314 125 0 18 chr12 64272267 64272323 -80010166 + MLT2D LTR ERVL 360 414 0 369 0 0 0 chr12 64272338 64272379 -80010110 + (CA)n Simple_repeat Simple_repeat 2 42 0 203 325 36 24 chr12 64272429 64272512 -80009977 - MIR SINE MIR -88 120 37 297 167 69 14 chr12 64273328 64273400 -80009089 - L1ME LINE L1 -404 5760 5685 1742 173 47 6 chr12 64274247 64274612 -80007877 - L1MB7 LINE L1 -18 6166 5787 997 235 0 5 chr12 64274772 64274985 -80007504 - MLT1A1 LTR MaLR -150 215 4 1542 180 28 10 chr12 64275310 64275599 -80006890 + AluJo SINE Alu 1 294 -18 191 225 0 0 chr12 64275677 64275717 -80006772 - L2 LINE L2 -669 2645 2606 32 26 0 0 chr12 64275811 64275850 -80006639 + AT_rich Low_complexity Low_complexity 1 39 0 2018 154 0 7 chr12 64276111 64276417 -80006072 - AluJb SINE Alu -8 304 1 2085 121 3 7 chr12 64276440 64276746 -80005743 - AluSg SINE Alu -5 305 1 2101 139 3 0 chr12 64276751 64277052 -80005437 - AluSx SINE Alu -10 302 1 983 198 17 0 chr12 64277216 64277388 -80005101 - MER5B DNA MER1_type -3 175 1 2257 121 0 0 chr12 64278238 64278543 -80003946 + AluSx SINE Alu 1 305 -7 552 120 0 0 chr12 64278870 64278970 -80003519 + (TG)n Simple_repeat Simple_repeat 2 101 0 1480 182 16 41 chr12 64279580 64279898 -80002591 - AluJo SINE Alu -2 310 1 184 80 0 0 chr12 64280251 64280276 -80002213 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2035 107 18 4 chr12 64280276 64280556 -80001933 - AluSx SINE Alu -28 284 1 1858 141 7 20 chr12 64280908 64281213 -80001276 - AluSx SINE Alu -11 301 1 22 0 0 0 chr12 64281221 64281243 -80001246 + AT_rich Low_complexity Low_complexity 1 22 0 1675 174 46 0 chr12 64281648 64281765 -80000724 + AluJb SINE Alu 3 113 -199 233 29 0 29 chr12 64281765 64281800 -80000689 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1675 174 46 0 chr12 64281800 64281964 -80000525 + AluJb SINE Alu 113 297 -15 240 163 0 0 chr12 64282708 64282751 -79999738 + (TATG)n Simple_repeat Simple_repeat 2 44 0 5234 177 58 6 chr12 64282849 64284765 -79997724 + L1MA4 LINE L1 4174 6295 -5 2071 141 0 3 chr12 64285664 64285976 -79996513 + AluSx SINE Alu 1 311 -1 443 258 77 53 chr12 64286079 64286288 -79996201 + L1ME LINE L1 5383 5596 -525 2036 61 100 4 chr12 64286381 64286661 -79995828 - AluY SINE Alu -4 307 1 40 67 0 0 chr12 64287093 64287168 -79995321 + AT_rich Low_complexity Low_complexity 1 75 0 473 198 0 0 chr12 64287168 64287269 -79995220 - L1PA16 LINE L1 -17 6149 6049 325 44 0 0 chr12 64287536 64287581 -79994908 - MADE1 DNA Mariner 0 80 36 2255 95 7 0 chr12 64287908 64288203 -79994286 + AluSx SINE Alu 1 297 -15 199 271 21 76 chr12 64288286 64288430 -79994059 + L2 LINE L2 2848 2983 -289 211 321 0 0 chr12 64288626 64288682 -79993807 + MIR SINE MIR 52 107 -155 346 250 31 86 chr12 64288684 64288812 -79993677 + MLT1J2 LTR MaLR 27 147 -299 438 298 94 31 chr12 64288820 64289011 -79993478 + MLT1J2 LTR MaLR 248 450 0 21 0 0 0 chr12 64289313 64289334 -79993155 + AT_rich Low_complexity Low_complexity 1 21 0 197 255 0 0 chr12 64290343 64290390 -79992099 - MIR SINE MIR 0 262 216 42 0 0 0 chr12 64290425 64290467 -79992022 + AT_rich Low_complexity Low_complexity 1 42 0 1727 168 7 0 chr12 64290476 64290786 -79991703 - L1PA16 LINE L1 -8 6158 5847 876 136 0 0 chr12 64290800 64290925 -79991564 - AluJb SINE Alu -187 125 1 25 65 0 0 chr12 64291134 64291180 -79991309 + AT_rich Low_complexity Low_complexity 1 46 0 225 128 103 60 chr12 64292002 64292119 -79990370 + (ATTAG)n Simple_repeat Simple_repeat 4 125 0 228 340 105 12 chr12 64292203 64292365 -79990124 + MER20B DNA MER1_type 2 178 -605 2960 159 11 26 chr12 64292398 64292933 -79989556 + L1MC1 LINE L1 5786 6312 -21 2730 154 47 4 chr12 64292941 64293575 -79988914 + MER67C LTR ERV1 19 710 0 31 0 0 24 chr12 64293688 64293699 -79988790 + AT_rich Low_complexity Low_complexity 1 11 -30 2420 94 5 16 chr12 64293699 64294072 -79988417 - L1PB1 LINE L1 -1 6150 5782 31 0 0 24 chr12 64294072 64294102 -79988387 + AT_rich Low_complexity Low_complexity 11 41 0 652 89 39 39 chr12 64294102 64294282 -79988207 + (TA)n Simple_repeat Simple_repeat 1 180 0 2814 85 0 10 chr12 64294282 64294683 -79987806 - L1PB1 LINE L1 -360 5791 5395 194 256 0 0 chr12 64295560 64295599 -79986890 + L2 LINE L2 3220 3258 -14 2201 101 0 11 chr12 64296796 64297133 -79985356 - AluSx SINE Alu 0 334 1 2166 128 3 0 chr12 64297911 64298215 -79984274 - AluSp SINE Alu -8 305 1 240 163 0 0 chr12 64298777 64298820 -79983669 + CT-rich Low_complexity Low_complexity 2 44 0 372 43 0 0 chr12 64299150 64299196 -79983293 + (CA)n Simple_repeat Simple_repeat 1 46 0 13027 176 31 59 chr12 64299277 64299400 -79983089 - L1MA9 LINE L1 -8 7723 7598 2475 65 0 10 chr12 64299400 64299708 -79982781 + AluY SINE Alu 1 305 -6 13027 176 31 59 chr12 64299708 64300103 -79982386 - L1MA9 LINE L1 -133 7598 7194 1904 151 3 3 chr12 64300103 64300395 -79982094 + AluSx SINE Alu 1 292 -20 13027 176 31 59 chr12 64300395 64300414 -79982075 - L1MA9 LINE L1 -537 7194 7176 279 0 0 0 chr12 64300414 64300445 -79982044 + (TG)n Simple_repeat Simple_repeat 2 32 0 13027 176 31 59 chr12 64300445 64302514 -79979975 - L1MA9 LINE L1 -555 7176 5051 1847 170 0 22 chr12 64302514 64302825 -79979664 - AluJb SINE Alu 0 312 9 369 250 0 0 chr12 64302825 64302893 -79979596 - AluS SINE Alu -234 68 1 13027 176 31 59 chr12 64302893 64303146 -79979343 - L1MA9 LINE L1 -2679 5052 4794 1731 180 4 0 chr12 64303146 64303448 -79979041 - AluJb SINE Alu 0 308 6 13027 176 31 59 chr12 64303448 64303761 -79978728 - L1MA9 LINE L1 -2937 4794 4474 992 139 0 0 chr12 64303761 64303926 -79978563 - L1MA5 LINE L1 0 6300 6136 13027 176 31 59 chr12 64303926 64305553 -79976936 - L1MA9 LINE L1 -3257 4474 2953 2008 147 10 0 chr12 64306054 64306360 -79976129 - AluSx SINE Alu -3 309 1 2052 289 83 47 chr12 64306773 64308065 -79974424 + HAL1 LINE L1 635 1972 -535 417 296 52 14 chr12 64308194 64308407 -79974082 + HAL1 LINE L1 2263 2483 -24 29 60 0 0 chr12 64308427 64308477 -79974012 + AT_rich Low_complexity Low_complexity 1 50 0 241 250 0 19 chr12 64309150 64309258 -79973231 - L1MEc LINE L1 -4142 2254 2149 335 320 31 0 chr12 64309914 64310011 -79972478 - MIR SINE MIR -98 164 65 894 259 84 81 chr12 64311047 64312079 -79970410 + LTR28 LTR ERV1 1 1755 0 1674 120 49 3 chr12 64312444 64312728 -79969761 - L1MA8 LINE L1 -825 5321 5025 * 5370 148 3 0 chr12 64312726 64313587 -79968902 + L1MA8 LINE L1 5315 6178 -113 4539 139 19 5 chr12 64314166 64314920 -79967569 - L1PA15 LINE L1 -1 6164 5401 235 271 47 37 chr12 64315013 64315120 -79967369 - MIR SINE MIR -1 261 154 182 342 27 45 chr12 64316170 64316281 -79966208 - L2 LINE L2 -5 3308 3200 1483 238 42 42 chr12 64316413 64316917 -79965572 + MLT1D LTR MaLR 1 504 -1 456 279 133 16 chr12 64316947 64317171 -79965318 + MIR SINE MIR 3 249 -13 30257 97 10 16 chr12 64317867 64323578 -79958911 + L1PA4 LINE L1 777 6469 -1 586 226 24 0 chr12 64323613 64323737 -79958752 + FRAM SINE Alu 43 169 -7 314 143 71 0 chr12 64324144 64324200 -79958289 + Tigger1 DNA MER2_type 523 582 -1836 347 261 255 6 chr12 64324201 64324362 -79958127 + MIR SINE MIR 51 251 -11 209 188 42 0 chr12 64325226 64325274 -79957215 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 229 280 28 84 chr12 64325728 64325835 -79956654 + MIR SINE MIR 49 149 -113 480 290 163 14 chr12 64325899 64326120 -79956369 - MIR SINE MIR -4 258 5 210 322 11 0 chr12 64326168 64326258 -79956231 + (TAG)n Simple_repeat Simple_repeat 1 91 0 273 119 0 0 chr12 64327435 64327477 -79955012 + (GA)n Simple_repeat Simple_repeat 1 42 0 22 35 0 0 chr12 64327811 64327840 -79954649 + AT_rich Low_complexity Low_complexity 1 29 0 6805 62 5 2 chr12 64327962 64329602 -79952887 - L1PA7 LINE L1 0 6154 4508 3950 98 2 4 chr12 64329602 64330164 -79952325 - L1PA7 LINE L1 -1914 4232 3672 3772 154 16 4 chr12 64330164 64330860 -79951629 - L1 LINE L1 -1305 4841 4138 989 263 56 11 chr12 64330858 64331303 -79951186 - L1 LINE L1 -2877 3269 2805 * 3244 114 68 12 chr12 64331360 64331878 -79950611 + LTR10A LTR ERV1 1 547 -62 1167 221 32 18 chr12 64331888 64332173 -79950316 + LTR10A-int LTR ERV1 1 289 -6360 2365 115 69 10 chr12 64332318 64332708 -79949781 + LTR10A-int LTR ERV1 609 1021 -5628 * 4389 93 9 3 chr12 64332691 64333323 -79949166 + LTR10A-int LTR ERV1 1233 1868 -4781 573 128 0 0 chr12 64333366 64333468 -79949021 + (GA)n Simple_repeat Simple_repeat 2 103 0 288 191 79 0 chr12 64333469 64333558 -79948931 + LTR10A-int LTR ERV1 1849 1944 -4705 * 2960 189 14 6 chr12 64333546 64334259 -79948230 + LTR10A-int LTR ERV1 2202 2692 -3957 2228 195 28 36 chr12 64334239 64334916 -79947573 + LTR10A-int LTR ERV1 956 4119 -3666 * 1428 165 63 11 chr12 64335264 64335535 -79946954 - MER34C LTR ERV1 -3 582 297 1814 166 66 119 chr12 64335535 64336114 -79946375 + LTR10A LTR ERV1 1 548 -61 1602 123 24 0 chr12 64336131 64336383 -79946106 - MER34C LTR ERV1 -291 294 37 1685 207 65 61 chr12 64336688 64337203 -79945286 - LTR55 LTR ERV -5 543 24 1831 172 87 6 chr12 64337203 64337569 -79944920 - MSTD LTR MaLR 0 396 1 1685 207 65 61 chr12 64337569 64337594 -79944895 - LTR55 LTR ERV -524 24 1 382 320 27 14 chr12 64337762 64337909 -79944580 + MIR SINE MIR 83 231 -31 570 242 47 42 chr12 64338665 64338855 -79943634 - L2 LINE L2 0 3313 3123 951 311 39 68 chr12 64341134 64341992 -79940497 - L2 LINE L2 -31 3282 2449 3196 138 76 6 chr12 64342808 64343358 -79939131 - L1P3 LINE L1 -5018 1443 855 3053 124 40 15 chr12 64343332 64343806 -79938683 - L1P3 LINE L1 -5966 495 10 * 262 229 0 29 chr12 64345766 64345836 -79936653 - MIR SINE MIR -95 167 100 33 56 0 0 chr12 64346223 64346277 -79936212 + AT_rich Low_complexity Low_complexity 1 54 0 2448 239 68 33 chr12 64346485 64346561 -79935928 - L1ME2 LINE L1 -68 6167 6095 2516 82 14 16 chr12 64346561 64346926 -79935563 + L1PA11 LINE L1 5801 6164 -10 2448 239 68 33 chr12 64346926 64347605 -79934884 - L1ME2 LINE L1 -140 6095 5375 270 0 0 0 chr12 64347605 64347635 -79934854 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2448 239 68 33 chr12 64347635 64348166 -79934323 - L1ME2 LINE L1 -860 5375 4864 1793 254 80 53 chr12 64348186 64349683 -79932806 - L1ME2 LINE L1 -3261 2954 1477 442 367 19 5 chr12 64349707 64349917 -79932572 - L1ME2 LINE L1 -6017 379 167 25903 114 6 5 chr12 64350346 64355206 -79927283 + L1PA8 LINE L1 1294 6161 -11 2058 125 3 3 chr12 64355250 64355546 -79926943 + AluSc SINE Alu 1 296 -13 237 341 87 36 chr12 64355601 64355739 -79926750 - LTR16A LTR ERVL -250 200 56 1195 207 0 38 chr12 64355851 64356088 -79926401 + MLT1-int LTR MaLR 975 1202 -169 296 301 26 9 chr12 64356103 64356216 -79926273 - HERV16 LTR ERVL -4524 472 358 9376 189 20 15 chr12 64356286 64358862 -79923627 + L1PA16 LINE L1 3087 5676 -490 308 43 22 0 chr12 64358862 64358908 -79923581 + (CA)n Simple_repeat Simple_repeat 2 48 0 9376 189 20 15 chr12 64358908 64359212 -79923277 + L1PA16 LINE L1 5676 5977 -189 1184 124 5 26 chr12 64359650 64359843 -79922646 + L1PA16 LINE L1 5974 6162 -4 22 35 0 0 chr12 64360417 64360446 -79922043 + AT_rich Low_complexity Low_complexity 1 29 0 293 100 20 0 chr12 64361546 64361596 -79920893 + (GGGAGA)n Simple_repeat Simple_repeat 6 56 0 213 367 102 8 chr12 64362063 64362191 -79920298 + L2 LINE L2 2906 3045 -227 866 208 113 12 chr12 64362632 64362872 -79919617 - L1ME1 LINE L1 -4 6162 5899 396 322 8 0 chr12 64363351 64363472 -79919017 - MARNA DNA Mariner -376 210 89 388 226 286 0 chr12 64363594 64363727 -79918762 - MIR SINE MIR -40 222 52 1740 161 45 14 chr12 64363879 64364165 -79918324 - AluJb SINE Alu -11 301 7 198 103 0 0 chr12 64364623 64364652 -79917837 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 214 362 81 35 chr12 64364660 64364834 -79917655 - L2 LINE L2 -8 3264 3083 194 324 59 0 chr12 64365082 64365150 -79917339 + L3b LINE CR1 1512 1583 0 21 0 0 0 chr12 64365343 64365364 -79917125 + AT_rich Low_complexity Low_complexity 1 21 0 689 265 26 56 chr12 64366247 64366481 -79916008 + MIR SINE MIR 4 230 -32 545 245 7 36 chr12 64366524 64366663 -79915826 - MIR SINE MIR -96 166 32 225 0 0 0 chr12 64366841 64366866 -79915623 + (TA)n Simple_repeat Simple_repeat 2 26 0 1733 33 0 5 chr12 64366871 64367085 -79915404 - L1PA5 LINE L1 -12 6142 5930 445 54 0 5 chr12 64367085 64367148 -79915341 + L1PA4 LINE L1 5805 5865 -266 887 297 18 0 chr12 64367587 64367816 -79914673 + MIR SINE MIR 1 233 -29 216 0 0 0 chr12 64368041 64368065 -79914424 + (TA)n Simple_repeat Simple_repeat 2 25 0 2121 112 3 35 chr12 64368065 64368378 -79914111 - AluSg1 SINE Alu -6 303 1 655 241 52 114 chr12 64369220 64369763 -79912726 + L1MC4a LINE L1 5610 6121 0 318 228 137 179 chr12 64371343 64371672 -79910817 + L2 LINE L2 2263 2577 -737 1367 190 79 0 chr12 64371673 64371963 -79910526 - LTR53 LTR ERVL 0 519 207 2839 182 0 53 chr12 64371963 64372513 -79909976 - MLT2B3 LTR ERVL -2 552 32 445 266 55 21 chr12 64372562 64372713 -79909776 + MER5B DNA MER1_type 7 161 -28 1765 128 52 13 chr12 64372927 64373274 -79909215 + Tigger7 DNA MER2_type 1 2587 0 * 2157 174 56 7 chr12 64373274 64373687 -79908802 - MLT1C LTR MaLR -32 435 3 362 288 131 5 chr12 64373736 64373927 -79908562 + L1MEc LINE L1 154 368 -6028 286 333 14 21 chr12 64374306 64374447 -79908042 + L1MEc LINE L1 551 690 -5427 1872 172 0 10 chr12 64374453 64374755 -79907734 + AluSx SINE Alu 1 299 -13 896 235 73 57 chr12 64374762 64375200 -79907289 + L1ME2 LINE L1 4947 5391 -755 447 234 171 36 chr12 64375202 64375424 -79907065 + L1ME2 LINE L1 5424 5675 -489 2174 124 140 8 chr12 64375463 64375841 -79906648 + MSTA LTR MaLR 1 428 0 737 247 64 61 chr12 64375842 64376242 -79906247 + L1ME2 LINE L1 5758 6320 -14 21 36 0 0 chr12 64377457 64377485 -79905004 + AT_rich Low_complexity Low_complexity 1 28 0 291 132 88 15 chr12 64377684 64377752 -79904737 + L1M4 LINE L1 2944 3016 -3130 483 271 33 0 chr12 64377843 64377965 -79904524 + MER5B DNA MER1_type 43 168 -10 472 49 0 0 chr12 64377965 64378026 -79904463 + L1P LINE L1 5109 5169 -977 22 56 0 0 chr12 64378089 64378125 -79904364 + AT_rich Low_complexity Low_complexity 1 36 0 310 279 12 12 chr12 64378373 64378459 -79904030 + MIR3 SINE MIR 121 206 -2 22253 87 11 7 chr12 64378593 64384712 -79897777 - L1PA6 LINE L1 -4 6150 11 23785 139 15 20 chr12 64384885 64391277 -79891212 - L1PA8A LINE L1 -28 6418 8 745 176 23 0 chr12 64392873 64393004 -79889485 - AluJo SINE Alu -178 134 1 21 95 0 0 chr12 64393234 64393297 -79889192 + AT_rich Low_complexity Low_complexity 1 63 0 360 0 0 0 chr12 64393566 64393606 -79888883 + (A)n Simple_repeat Simple_repeat 1 40 0 235 252 139 26 chr12 64394487 64394602 -79887887 - MIR SINE MIR -83 179 52 832 195 125 7 chr12 64396084 64396356 -79886133 - LTR37A LTR ERV1 0 426 123 520 228 0 94 chr12 64396529 64396700 -79885789 + MER63 DNA MER1_type 678 832 -230 840 269 101 14 chr12 64396705 64397062 -79885427 - MER21B LTR ERV1 -15 848 461 882 231 0 0 chr12 64397062 64397235 -79885254 + FRAM SINE Alu 1 172 -4 1625 182 0 4 chr12 64397243 64397523 -79884966 - MER1B DNA MER1_type -60 279 1 591 260 128 20 chr12 64397523 64397719 -79884770 - MER21B LTR ERV1 -398 465 249 316 185 0 31 chr12 64397845 64397910 -79884579 - MER21B LTR ERV1 -800 63 1 273 235 0 24 chr12 64397917 64398002 -79884487 + MER63 DNA MER1_type 840 922 -140 945 256 62 9 chr12 64398023 64398359 -79884130 - L1ME1 LINE L1 -56 6110 5757 1225 252 79 18 chr12 64398359 64398688 -79883801 - LTR40a LTR ERVL -170 349 1 231 269 77 10 chr12 64398720 64398824 -79883665 + L1M4 LINE L1 5070 5180 -966 388 259 72 0 chr12 64399023 64399162 -79883327 - MER103 DNA DNA -7 159 11 815 183 156 0 chr12 64399171 64399351 -79883138 + MER3 DNA MER1_type 1 208 -1 4361 211 57 11 chr12 64399422 64400416 -79882073 - MER45B DNA AcHobo 0 1040 1 1674 188 12 6 chr12 64400470 64400806 -79881683 - MER2 DNA MER2_type -7 338 1 242 245 0 0 chr12 64400811 64400860 -79881629 + MIR SINE MIR 122 170 -92 2432 142 20 0 chr12 64400898 64401293 -79881196 - MER57A LTR ERV1 0 403 1 2154 228 59 53 chr12 64402410 64403340 -79879149 + LTR28 LTR ERV1 1 1020 0 13385 179 64 85 chr12 64403344 64406985 -79875504 + LTR28-int LTR ERV1 7 3573 -3518 22565 128 14 8 chr12 64407246 64410736 -79871753 + LTR28-int LTR ERV1 3581 7090 -1 1707 229 163 53 chr12 64410737 64411656 -79870833 + LTR28 LTR ERV1 1 1020 0 235 256 35 12 chr12 64412158 64412244 -79870245 + Charlie4 DNA MER1_type 1869 1956 -5 1640 166 45 6 chr12 64413992 64414324 -79868165 - L1MA9 LINE L1 -5 6307 5963 260 254 18 0 chr12 64414442 64414497 -79867992 + L2 LINE L2 3205 3260 -12 265 289 70 35 chr12 64414967 64415081 -79867408 - MIR SINE MIR -60 148 31 2315 80 16 25 chr12 64415444 64415758 -79866731 + AluY SINE Alu 1 311 0 1641 170 21 35 chr12 64416807 64417096 -79865393 - AluJo SINE Alu -27 285 1 21 0 0 0 chr12 64417149 64417170 -79865319 + AT_rich Low_complexity Low_complexity 1 21 0 741 206 127 40 chr12 64418015 64418243 -79864246 - MIR SINE MIR -1 261 14 489 112 0 34 chr12 64419043 64419132 -79863357 - LTR45B LTR ERV1 -107 382 297 196 320 0 67 chr12 64420020 64420095 -79862394 + MIR SINE MIR 40 109 -99 802 279 131 35 chr12 64420301 64420752 -79861737 - L2 LINE L2 -1 3312 2819 978 326 92 9 chr12 64420777 64421213 -79861276 + L2 LINE L2 2296 2767 -547 192 77 0 0 chr12 64422399 64422425 -79860064 + (T)n Simple_repeat Simple_repeat 1 26 0 559 170 26 17 chr12 64422566 64422818 -79859671 - L1MA4A LINE L1 -4 6296 5984 195 360 23 35 chr12 64422928 64423014 -79859475 + MIR SINE MIR 20 104 -158 231 36 0 0 chr12 64423394 64423422 -79859067 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 238 293 9 0 chr12 64424155 64424261 -79858228 + L1MC4a LINE L1 6411 6517 -1291 1623 211 72 63 chr12 64424295 64424667 -79857822 + L1MC5 LINE L1 7077 7444 -517 328 20 20 20 chr12 64424667 64424717 -79857772 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1623 211 72 63 chr12 64424717 64425123 -79857366 + L1MC5 LINE L1 7444 7862 -99 282 308 103 79 chr12 64425862 64426317 -79856172 + L2 LINE L2 2848 3313 0 2025 107 7 11 chr12 64427880 64428161 -79854328 + AluSx SINE Alu 30 309 -3 629 293 38 34 chr12 64429153 64429392 -79853097 - MIR SINE MIR -2 260 21 1969 108 131 12 chr12 64430037 64430372 -79852117 - THE1C LTR MaLR 0 375 1 708 123 0 85 chr12 64430373 64430503 -79851986 + FLAM_A SINE Alu 1 119 -14 954 233 78 3 chr12 64431308 64431652 -79850837 - Charlie2 DNA MER1_type -17 2845 2476 2751 137 38 38 chr12 64431656 64432269 -79850220 + L1PA16 LINE L1 5333 5945 -221 231 200 0 62 chr12 64432437 64432502 -79849987 - LTR33A LTR ERVL -21 502 442 1261 149 40 5 chr12 64432664 64432886 -79849603 + L1PA16 LINE L1 5815 6044 -122 306 198 13 69 chr12 64432903 64433030 -79849459 - LTR33A LTR ERVL -4 519 440 227 369 25 16 chr12 64433207 64433329 -79849160 - LTR33A LTR ERVL -348 175 53 2737 194 18 18 chr12 64433709 64434262 -79848227 + LTR38 LTR ERV1 4 556 0 533 346 50 39 chr12 64434324 64434688 -79847801 - MER90 LTR ERV1 -1 613 246 361 287 73 47 chr12 64435919 64436069 -79846420 + MIR SINE MIR 20 173 -89 2193 183 82 56 chr12 64436182 64436719 -79845770 - MLT2B3 LTR ERVL 0 554 4 210 232 116 14 chr12 64437341 64437410 -79845079 + MIR SINE MIR 20 95 -167 207 114 0 0 chr12 64437425 64437460 -79845029 + (TC)n Simple_repeat Simple_repeat 2 36 0 288 287 139 0 chr12 64437461 64437590 -79844899 + MIR SINE MIR 110 256 -6 478 238 41 78 chr12 64438184 64438685 -79843804 - L1ME LINE L1 -468 5685 5127 609 82 10 41 chr12 64438877 64438975 -79843514 - AluSp/q SINE Alu -19 294 200 910 295 67 10 chr12 64438975 64439480 -79843009 - L1ME LINE L1 -1109 5020 4487 344 329 160 29 chr12 64439553 64439903 -79842586 - L1ME LINE L1 -1742 4387 3992 998 292 97 39 chr12 64439907 64441135 -79841354 - L1ME LINE L1 -2210 3919 2621 656 145 29 7 chr12 64441300 64441438 -79841051 - MER53 DNA DNA -34 155 15 228 196 11 43 chr12 64441553 64441645 -79840844 + CT-rich Low_complexity Low_complexity 4 92 0 820 151 0 36 chr12 64441776 64441915 -79840574 - AluJo SINE Alu -178 134 1 290 262 93 9 chr12 64441915 64442022 -79840467 - L1ME LINE L1 -3861 2268 2153 221 233 0 35 chr12 64442047 64442133 -79840356 + T-rich Low_complexity Low_complexity 4 86 0 1492 293 40 49 chr12 64442180 64443020 -79839469 - L1ME LINE L1 -4863 1256 424 23 0 0 0 chr12 64443190 64443213 -79839276 + AT_rich Low_complexity Low_complexity 1 23 0 1553 252 83 35 chr12 64443429 64443944 -79838545 + MLT1F LTR MaLR 3 542 0 387 0 0 0 chr12 64444243 64444286 -79838203 + (CA)n Simple_repeat Simple_repeat 2 44 0 30 0 0 0 chr12 64445547 64445577 -79836912 + AT_rich Low_complexity Low_complexity 1 30 0 275 245 58 75 chr12 64445934 64446175 -79836314 + L1ME LINE L1 3730 3966 -2180 227 283 69 66 chr12 64446323 64446690 -79835799 + L1ME LINE L1 4249 4616 -1530 227 310 0 0 chr12 64446851 64446909 -79835580 + GA-rich Low_complexity Low_complexity 2 59 0 345 289 103 33 chr12 64446915 64447188 -79835301 + L1ME LINE L1 4638 4929 -1217 473 331 24 12 chr12 64447237 64447403 -79835086 + MER5A DNA MER1_type 3 170 -19 2251 125 23 6 chr12 64447641 64447994 -79834495 - MER6 DNA MER2_type 0 865 247 2305 104 0 0 chr12 64448413 64448720 -79833769 + AluSp SINE Alu 1 307 -6 351 259 29 69 chr12 64449131 64449305 -79833184 + L1ME LINE L1 5455 5621 -500 252 349 0 0 chr12 64450005 64450114 -79832375 + (CCA)n Simple_repeat Simple_repeat 3 111 0 181 261 33 65 chr12 64450154 64450246 -79832243 + L2 LINE L2 2559 2647 -667 7488 44 14 0 chr12 64451085 64452019 -79830470 - L1PA5 LINE L1 -1074 5072 4126 7219 50 5 0 chr12 64452019 64453089 -79829400 + L1PA5 LINE L1 5076 6149 -5 1697 312 24 14 chr12 64454003 64454637 -79827852 + L1M3d LINE L1 423 1104 -5199 1251 267 89 6 chr12 64454753 64455207 -79827282 + L1M3d LINE L1 1333 1818 -4516 6821 206 57 14 chr12 64455227 64456919 -79825570 + L1M3d LINE L1 2530 4304 -2078 3305 126 56 2 chr12 64456919 64457419 -79825070 - MER1A DNA MER1_type 0 527 1 6821 206 57 14 chr12 64457419 64457494 -79824995 + L1M3d LINE L1 4304 4374 -2008 3118 236 62 38 chr12 64457495 64458609 -79823880 - L1MEc LINE L1 -2752 3463 2355 2007 158 0 0 chr12 64458609 64458912 -79823577 - AluSx SINE Alu -9 303 1 3118 236 62 38 chr12 64458912 64459142 -79823347 - L1MEc LINE L1 -3860 2355 2132 1153 94 198 0 chr12 64459902 64460094 -79822395 + MER30 DNA MER1_type 1 230 0 1100 260 41 101 chr12 64460177 64460808 -79821681 + MER77 LTR ERV1 53 599 -6 345 82 0 0 chr12 64460884 64460933 -79821556 - LTR5 LTR ERVK -848 121 73 21 36 0 0 chr12 64460941 64460969 -79821520 + AT_rich Low_complexity Low_complexity 1 28 0 339 25 0 0 chr12 64461243 64461283 -79821206 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 281 146 0 0 chr12 64461283 64461324 -79821165 - Alu SINE Alu -16 286 246 216 263 0 0 chr12 64462171 64462228 -79820261 - MIR SINE MIR -34 228 172 215 352 23 23 chr12 64462438 64462526 -79819963 - MIR3 SINE MIR -111 97 10 942 224 9 47 chr12 64462736 64462968 -79819521 - MER58A DNA MER1_type 0 224 2 267 240 260 19 chr12 64463605 64463709 -79818780 + L2 LINE L2 3182 3310 -3 1565 255 120 72 chr12 64464099 64465443 -79817046 - L2 LINE L2 -6 3307 1880 4290 171 21 72 chr12 64465459 64465833 -79816656 - L1MB3 LINE L1 -2 6181 5790 2001 148 3 3 chr12 64465833 64466138 -79816351 - AluSq SINE Alu -8 305 1 4290 171 21 72 chr12 64466138 64467097 -79815392 - L1MB3 LINE L1 -393 5790 4901 3057 263 104 75 chr12 64467098 64467162 -79815327 - L2 LINE L2 -1428 1886 1825 1967 116 7 20 chr12 64467162 64467463 -79815026 + AluSx SINE Alu 12 308 -4 3057 263 104 75 chr12 64467463 64468309 -79814180 - L2 LINE L2 -1489 1825 1005 2112 78 0 0 chr12 64468309 64468577 -79813912 + AluY SINE Alu 44 311 0 3057 263 104 75 chr12 64468577 64468789 -79813700 - L2 LINE L2 -2309 1005 801 1883 132 3 10 chr12 64468789 64469077 -79813412 + AluSx SINE Alu 3 288 -24 3057 263 104 75 chr12 64469077 64469414 -79813075 - L2 LINE L2 -2513 801 383 1865 113 78 7 chr12 64470645 64470929 -79811560 + AluSx SINE Alu 1 304 -8 24 32 0 0 chr12 64472598 64472629 -79809860 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr12 64472858 64472888 -79809601 + AT_rich Low_complexity Low_complexity 1 30 0 1727 177 3 7 chr12 64472938 64473221 -79809268 + AluJb SINE Alu 1 282 -30 315 0 0 0 chr12 64473232 64473267 -79809222 + (CA)n Simple_repeat Simple_repeat 1 35 0 484 283 120 16 chr12 64473754 64473945 -79808544 + MIR SINE MIR 15 225 -37 19951 39 3 0 chr12 64475617 64478864 -79803625 - L1PA4 LINE L1 0 6155 2902 188 276 92 26 chr12 64479155 64479231 -79803258 + MER5A DNA MER1_type 87 167 -22 297 0 0 0 chr12 64479483 64479516 -79802973 + (CA)n Simple_repeat Simple_repeat 2 34 0 272 312 50 30 chr12 64479867 64480069 -79802420 + HAL1b LINE L1 77 282 -1066 343 324 87 9 chr12 64480121 64480340 -79802149 + L1 LINE L1 2289 2524 -3622 240 239 15 0 chr12 64480527 64480594 -79801895 + T-rich Low_complexity Low_complexity 6 73 0 642 189 8 0 chr12 64480895 64481022 -79801467 - L1MC3 LINE L1 -1591 6194 6067 6773 227 34 17 chr12 64481059 64482169 -79800320 + L1 LINE L1 2654 3808 -2338 2155 87 4 0 chr12 64482169 64482445 -79800044 + AluSp SINE Alu 37 313 0 6773 227 34 17 chr12 64482445 64483145 -79799344 + L1 LINE L1 3808 4495 -1651 3486 181 143 89 chr12 64483245 64483969 -79798520 + L1MC3 LINE L1 6326 7208 -577 248 260 0 0 chr12 64483969 64484042 -79798447 + MLT1F1 LTR MaLR 42 114 -453 3486 181 143 89 chr12 64484042 64484427 -79798062 + L1MC3 LINE L1 7208 7571 -214 820 253 62 12 chr12 64484407 64484731 -79797758 + L1MA4 LINE L1 5961 6300 0 * 969 138 52 19 chr12 64484746 64484956 -79797533 + L1MC3 LINE L1 7569 7785 0 24 32 0 0 chr12 64485051 64485082 -79797407 + AT_rich Low_complexity Low_complexity 1 31 0 4973 52 3 0 chr12 64485095 64485709 -79796780 + L1PA7 LINE L1 5526 6141 -13 1995 153 0 14 chr12 64486759 64487053 -79795436 + AluJb SINE Alu 6 295 -17 342 347 41 88 chr12 64487154 64487517 -79794972 + L2 LINE L2 2927 3272 0 264 370 46 19 chr12 64487944 64488052 -79794437 - L2 LINE L2 -18 3254 3144 28 0 0 0 chr12 64488065 64488093 -79794396 + AT_rich Low_complexity Low_complexity 1 28 0 252 298 289 0 chr12 64488122 64488236 -79794253 - L2 LINE L2 -219 3053 2907 230 318 116 44 chr12 64488416 64489052 -79793437 - L2 LINE L2 -925 2389 1708 1946 125 41 16 chr12 64489649 64489969 -79792520 + MER1B DNA MER1_type 1 328 -11 3807 239 84 118 chr12 64489969 64490175 -79792314 - L2 LINE L2 -1045 2269 2058 183 114 0 0 chr12 64490175 64490210 -79792279 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3807 239 84 118 chr12 64490210 64492157 -79790332 - L2 LINE L2 -1256 2058 189 481 283 0 0 chr12 64492899 64493005 -79789484 - L2 LINE L2 -19 3294 3189 837 310 78 29 chr12 64493325 64493954 -79788535 - L1ME3 LINE L1 -240 5922 5263 2220 218 55 80 chr12 64493961 64494390 -79788099 - L1MC4 LINE L1 -1 8041 7640 3135 138 16 2 chr12 64494390 64494889 -79787600 - MER84 LTR ERV1 0 507 2 2220 218 55 80 chr12 64494889 64495263 -79787226 - L1MC4 LINE L1 -402 7640 7258 513 272 147 26 chr12 64495268 64495312 -79787177 - L1ME3 LINE L1 -1352 4794 4757 2004 161 195 12 chr12 64495312 64495815 -79786674 - LTR49 LTR ERV1 0 595 1 513 272 147 26 chr12 64495815 64496083 -79786406 - L1ME3 LINE L1 -1389 4757 4444 2241 127 0 0 chr12 64496526 64496833 -79785656 + AluSx SINE Alu 1 307 -5 627 228 32 32 chr12 64496958 64497116 -79785373 + LOR1b LTR ERV1 115 272 -189 * 881 165 211 35 chr12 64497113 64497373 -79785116 + LOR1a LTR ERV1 192 497 0 1049 169 12 0 chr12 64497873 64498045 -79784444 + FAM SINE Alu 1 174 -1 198 238 16 48 chr12 64498576 64498639 -79783850 + MIR SINE MIR 48 108 -100 386 238 160 25 chr12 64499409 64499568 -79782921 + MIR SINE MIR 17 208 -54 313 357 89 9 chr12 64499977 64500201 -79782288 + MIR SINE MIR 7 248 -14 535 296 64 15 chr12 64502033 64502236 -79780253 + MIR SINE MIR 20 232 -30 1447 212 3 7 chr12 64502582 64502865 -79779624 + AluJo SINE Alu 1 282 -30 353 243 67 74 chr12 64502915 64503199 -79779290 + L1ME4a LINE L1 5602 5883 -238 2080 129 0 0 chr12 64503329 64503623 -79778866 - AluSx SINE Alu -18 294 1 22 0 0 0 chr12 64503635 64503657 -79778832 + AT_rich Low_complexity Low_complexity 1 22 0 1963 143 7 3 chr12 64504657 64504943 -79777546 + AluJb SINE Alu 1 287 -25 459 0 0 0 chr12 64505767 64505818 -79776671 + (TG)n Simple_repeat Simple_repeat 2 52 0 240 86 0 0 chr12 64506089 64506124 -79776365 + (TC)n Simple_repeat Simple_repeat 1 35 0 369 0 0 0 chr12 64506124 64506165 -79776324 + (TG)n Simple_repeat Simple_repeat 2 42 0 398 282 136 52 chr12 64506504 64506717 -79775772 + MIR SINE MIR 21 251 -11 312 228 13 0 chr12 64506891 64506970 -79775519 + LTR58 LTR ERV1 350 429 -250 225 232 0 18 chr12 64507211 64507267 -79775222 + (TTA)n Simple_repeat Simple_repeat 2 56 0 2034 137 28 5 chr12 64507345 64507715 -79774774 - MER4A LTR ERV1 0 664 176 532 45 0 0 chr12 64507687 64507754 -79774735 - MER4A LTR ERV1 -307 357 291 * 1615 138 58 7 chr12 64507753 64508152 -79774337 - LTR19A LTR ERV1 -21 465 1 353 247 113 20 chr12 64508209 64508359 -79774130 + MER103 DNA DNA 3 166 0 183 270 189 27 chr12 64508511 64508622 -79773867 - MIR SINE MIR -69 193 65 500 45 15 0 chr12 64509148 64509215 -79773274 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 261 0 0 0 chr12 64512691 64512720 -79769769 + (TG)n Simple_repeat Simple_repeat 1 29 0 252 0 0 0 chr12 64512719 64512747 -79769742 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 386 276 28 88 chr12 64512791 64512972 -79769517 - MER5A DNA MER1_type 0 189 20 444 255 43 49 chr12 64516231 64516415 -79766074 + MIR SINE MIR 34 216 -46 1741 97 0 0 chr12 64516882 64517099 -79765390 - AluSc SINE Alu -17 292 76 31 0 0 0 chr12 64519399 64519430 -79763059 + AT_rich Low_complexity Low_complexity 1 31 0 212 188 0 21 chr12 64520579 64520627 -79761862 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 2097 97 0 0 chr12 64520798 64521066 -79761423 + AluSg SINE Alu 34 301 -9 7617 26 3 0 chr12 64521439 64522520 -79759969 - L1PA4 LINE L1 -3 6152 5071 1569 52 0 5 chr12 64522520 64522732 -79759757 + L1P LINE L1 3786 3996 -2150 354 294 11 0 chr12 64523117 64523209 -79759280 - L2 LINE L2 -4 3309 3217 4646 182 24 19 chr12 64523419 64524423 -79758066 + L1MC3 LINE L1 5841 6849 -936 472 301 113 9 chr12 64524444 64524779 -79757710 - L2 LINE L2 -1911 1403 1034 1509 206 29 29 chr12 64525765 64525985 -79756504 + MER58B DNA MER1_type 1 223 -2197 989 236 9 18 chr12 64525985 64526210 -79756279 - MER58A DNA MER1_type -1 223 1 1509 206 29 29 chr12 64526210 64526329 -79756160 + MER58B DNA MER1_type 222 340 -1 570 264 8 0 chr12 64526332 64526453 -79756036 + L2 LINE L2 3191 3312 -1 643 282 52 5 chr12 64526477 64526690 -79755799 - L3 LINE CR1 -124 1453 1231 2308 112 0 0 chr12 64527133 64527446 -79755043 - AluSp SINE Alu 0 313 1 367 334 135 10 chr12 64528310 64528540 -79753949 + MIR SINE MIR 1 256 -6 238 234 156 0 chr12 64528613 64528677 -79753812 + MER81 DNA DNA 36 109 -5 1033 184 4 73 chr12 64528854 64529088 -79753401 + MER20 DNA MER1_type 1 218 -1 344 331 53 0 chr12 64529500 64529633 -79752856 + MER5B DNA MER1_type 1 140 -38 206 250 0 0 chr12 64530241 64530285 -79752204 + MER5A DNA MER1_type 32 75 -114 1050 181 22 0 chr12 64530435 64530617 -79751872 + MER5A DNA MER1_type 1 186 -3 374 292 181 28 chr12 64530634 64530778 -79751711 + MER5B DNA MER1_type 6 171 -7 316 238 205 33 chr12 64530819 64530970 -79751519 + MER5B DNA MER1_type 1 177 -1 182 326 38 91 chr12 64530983 64531004 -79751485 - MIR SINE MIR -62 146 125 2685 70 28 11 chr12 64531004 64531362 -79751127 + THE1B LTR MaLR 1 364 0 182 326 38 91 chr12 64531362 64531472 -79751017 - MIR SINE MIR -83 125 22 1818 156 42 0 chr12 64531664 64531947 -79750542 + AluSg SINE Alu 1 295 -15 542 280 76 34 chr12 64531962 64532198 -79750291 + MLT1G1 LTR MaLR 3 248 -347 246 226 71 12 chr12 64532212 64532296 -79750193 + L1M4 LINE L1 2631 2719 -3427 432 221 154 8 chr12 64532345 64532670 -79749819 + MLT1F LTR MaLR 232 590 0 24 0 0 0 chr12 64532786 64532810 -79749679 + AT_rich Low_complexity Low_complexity 1 24 0 359 298 25 0 chr12 64533800 64533921 -79748568 - MER117 DNA MER1_type -1 196 73 683 253 21 46 chr12 64534577 64534771 -79747718 + MIR SINE MIR 72 260 -2 2442 119 65 0 chr12 64534844 64535256 -79747233 - Tigger2 DNA MER2_type 0 2718 2280 1351 129 0 67 chr12 64535280 64535505 -79746984 + AluJo SINE Alu 85 294 -18 280 200 0 0 chr12 64535507 64535557 -79746932 - Tigger2 DNA MER2_type -2668 50 1 21 0 0 0 chr12 64535979 64536000 -79746489 + AT_rich Low_complexity Low_complexity 1 21 0 533 253 51 6 chr12 64536394 64536552 -79745937 - MIR SINE MIR -26 236 72 2105 161 47 0 chr12 64536555 64536941 -79745548 + LTR57 LTR ERVL 8 411 0 216 330 57 28 chr12 64537735 64537841 -79744648 + MIR SINE MIR 3 111 -151 1036 292 70 58 chr12 64538546 64539163 -79743326 - MER45C DNA AcHobo -328 625 2 232 273 30 0 chr12 64540498 64540564 -79741925 - MIR SINE MIR -36 226 159 983 222 0 0 chr12 64540609 64540794 -79741695 - MER77 LTR ERV1 -420 185 1 317 273 124 25 chr12 64540802 64540923 -79741566 - MIR SINE MIR -119 143 11 2160 123 0 0 chr12 64541288 64541580 -79740909 - AluSg SINE Alu -13 297 6 378 289 62 8 chr12 64541608 64541736 -79740753 - MIR SINE MIR -54 208 74 506 91 26 0 chr12 64541975 64542052 -79740437 + MADE1 DNA Mariner 2 80 0 205 315 69 39 chr12 64542869 64542999 -79739490 - L2 LINE L2 -5 3308 3175 512 42 28 0 chr12 64543034 64543106 -79739383 + L1PA4 LINE L1 6080 6153 -2 551 53 0 0 chr12 64543119 64543195 -79739294 + L1PA4 LINE L1 6080 6155 0 1022 188 85 89 chr12 64543761 64544181 -79738308 + L1MC/D LINE L1 5066 5474 -743 746 193 7 0 chr12 64544181 64544321 -79738168 + FRAM SINE Alu 32 172 -4 389 235 35 0 chr12 64544321 64544406 -79738083 + L1MC/D LINE L1 5483 5570 -763 4828 146 23 17 chr12 64544414 64545596 -79736893 - L1PB4 LINE L1 0 6156 4970 1097 142 73 34 chr12 64545600 64545833 -79736656 + MER21A LTR ERV1 21 262 -669 2998 145 45 24 chr12 64545840 64546379 -79736110 + MER21A LTR ERV1 376 925 -6 763 228 16 0 chr12 64546385 64546569 -79735920 - L1PB4 LINE L1 -1183 4963 4777 1749 142 69 10 chr12 64546705 64546993 -79735496 + AluSx SINE Alu 1 305 -7 2234 114 3 16 chr12 64547532 64547847 -79734642 + AluSx SINE Alu 2 312 0 205 304 11 33 chr12 64548244 64548336 -79734153 + CT-rich Low_complexity Low_complexity 1 90 0 269 383 67 15 chr12 64550890 64551159 -79731330 + L2 LINE L2 2464 2746 -568 23 0 0 0 chr12 64551211 64551234 -79731255 + AT_rich Low_complexity Low_complexity 1 23 0 265 307 46 78 chr12 64551846 64551999 -79730490 + L2 LINE L2 3161 3308 -5 445 291 110 39 chr12 64552611 64552752 -79729737 + MIR SINE MIR 7 158 -95 2448 120 28 11 chr12 64552752 64553110 -79729379 - THE1B LTR MaLR 0 364 1 445 291 110 39 chr12 64553110 64553147 -79729342 + MIR SINE MIR 158 191 -62 283 376 9 0 chr12 64553566 64553675 -79728814 - MIR SINE MIR -140 122 13 1560 168 42 18 chr12 64554462 64554748 -79727741 - AluJb SINE Alu -9 303 11 250 267 0 0 chr12 64555243 64555303 -79727186 + (CTG)n Simple_repeat Simple_repeat 2 61 0 240 59 0 0 chr12 64555602 64555636 -79726853 + (A)n Simple_repeat Simple_repeat 1 34 0 244 279 108 9 chr12 64555638 64555749 -79726740 - MLT1H LTR MaLR -24 525 404 217 295 66 0 chr12 64556901 64556962 -79725527 + MIR SINE MIR 42 106 -102 370 295 133 29 chr12 64557430 64557603 -79724886 - MIR SINE MIR -23 239 49 220 289 19 0 chr12 64557614 64557666 -79724823 + MIR3 SINE MIR 125 177 -31 1452 199 4 7 chr12 64557692 64557964 -79724525 + MER77 LTR ERV1 1 271 -334 464 354 35 18 chr12 64558369 64558598 -79723891 + ERVL LTR ERVL 413 645 -5119 215 305 17 0 chr12 64559104 64559163 -79723326 + L2 LINE L2 3201 3260 -12 2266 95 7 0 chr12 64559802 64560098 -79722391 + AluSq SINE Alu 1 298 -15 254 246 173 36 chr12 64560354 64560464 -79722025 + L2 LINE L2 3185 3309 -4 590 335 76 30 chr12 64560612 64561087 -79721402 + L2 LINE L2 2271 2767 -547 314 338 52 29 chr12 64561574 64561710 -79720779 + MER91C DNA MER1_type 1 139 -1 265 314 75 31 chr12 64562148 64562307 -79720182 - LTR33 LTR ERVL -352 169 4 464 257 92 0 chr12 64562829 64562981 -79719508 - ERVL LTR ERVL -1834 3930 3765 1237 198 37 89 chr12 64563098 64563535 -79718954 - MLT2B1 LTR ERVL 0 444 1 2028 137 0 53 chr12 64563642 64563963 -79718526 - AluSx SINE Alu -8 304 1 2818 340 61 18 chr12 64563964 64565894 -79716595 - ERVL LTR ERVL -2190 3464 1453 261 352 0 0 chr12 64566017 64566145 -79716344 - ERVL LTR ERVL -4469 1016 889 183 129 0 0 chr12 64566435 64566466 -79716023 + (TTCCC)n Simple_repeat Simple_repeat 4 34 0 673 307 90 42 chr12 64566926 64567382 -79715107 - LTR33 LTR ERVL 0 521 44 2428 76 0 6 chr12 64567663 64568007 -79714482 - L1PA13 LINE L1 -548 5615 5274 3546 95 41 4 chr12 64568007 64568517 -79713972 + L1PA13 LINE L1 5609 6144 -19 2298 107 3 0 chr12 64568683 64568982 -79713507 - AluSx SINE Alu -12 300 1 322 329 211 27 chr12 64569053 64569275 -79713214 + L2 LINE L2 2866 3046 -226 307 141 0 130 chr12 64569275 64569367 -79713122 + MADE1 DNA Mariner 1 80 0 322 329 211 27 chr12 64569367 64569481 -79713008 + L2 LINE L2 3046 3264 -8 621 308 172 16 chr12 64570140 64570681 -79711808 + L2 LINE L2 2684 3313 0 1806 227 54 25 chr12 64571484 64571969 -79710520 - MLT1F1 LTR MaLR 0 567 69 21 57 0 0 chr12 64572302 64572337 -79710152 + AT_rich Low_complexity Low_complexity 1 35 0 207 377 27 14 chr12 64572624 64572770 -79709719 + L3b LINE CR1 1326 1473 -110 486 0 0 0 chr12 64574247 64574301 -79708188 + (CA)n Simple_repeat Simple_repeat 2 55 0 30 27 0 0 chr12 64574579 64574616 -79707873 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr12 64574775 64574796 -79707693 + AT_rich Low_complexity Low_complexity 1 21 0 836 260 80 33 chr12 64574981 64575346 -79707143 - Charlie7 DNA MER1_type -2000 612 231 767 227 108 133 chr12 64575958 64576531 -79705958 - MLT1G LTR MaLR 0 590 32 364 361 40 0 chr12 64576560 64576762 -79705727 - L1MC4a LINE L1 -1890 5918 5709 314 285 110 35 chr12 64576764 64577136 -79705353 - L1MC4a LINE L1 -2117 5691 5292 592 307 56 6 chr12 64577394 64577573 -79704916 + MER5A DNA MER1_type 1 188 -1 212 222 22 0 chr12 64577682 64577725 -79704764 - L3 LINE CR1 -8 1569 1526 288 253 273 0 chr12 64577725 64577824 -79704665 + MER5B DNA MER1_type 1 126 -52 274 241 120 68 chr12 64577873 64578006 -79704483 - MIR3 SINE MIR -50 158 19 2334 91 3 19 chr12 64578386 64578422 -79704067 - AluSp SINE Alu 0 313 278 194 0 39 0 chr12 64578422 64578448 -79704041 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 2334 91 3 19 chr12 64578448 64578729 -79703760 - AluSp SINE Alu -35 278 1 192 331 62 62 chr12 64578826 64578986 -79703503 + MIR SINE MIR 23 182 -80 1869 152 45 20 chr12 64579326 64579682 -79702807 + MLT1A1 LTR MaLR 1 365 0 29 28 0 0 chr12 64580039 64580075 -79702414 + AT_rich Low_complexity Low_complexity 1 36 0 336 292 38 10 chr12 64580094 64580303 -79702186 - L1ME4a LINE L1 -121 6000 5786 376 208 0 0 chr12 64580433 64580510 -79701979 + MER116 DNA Mariner 2 78 -2 356 221 122 30 chr12 64580516 64580647 -79701842 - MIR SINE MIR -114 148 6 434 294 124 10 chr12 64581076 64581270 -79701219 - MIR SINE MIR -12 250 35 2284 71 3 7 chr12 64582836 64583141 -79699348 - AluSg SINE Alu 0 304 1 188 261 196 11 chr12 64583719 64583811 -79698678 + MIR SINE MIR 141 249 -13 557 211 157 34 chr12 64584129 64584333 -79698156 - MER106A DNA MER1_type -7 229 1 577 324 37 0 chr12 64585591 64585863 -79696626 + L1MB2 LINE L1 5512 5793 -328 1691 168 3 23 chr12 64585907 64586210 -79696279 + L1MB2 LINE L1 5873 6169 -2 21 0 0 0 chr12 64587574 64587595 -79694894 + AT_rich Low_complexity Low_complexity 1 21 0 229 159 68 0 chr12 64588117 64588161 -79694328 - MIR SINE MIR -98 164 118 1078 75 0 0 chr12 64588951 64589085 -79693404 - THE1B LTR MaLR 0 364 231 416 264 94 13 chr12 64589185 64589344 -79693145 + MIR SINE MIR 82 253 -9 513 293 17 6 chr12 64590616 64590797 -79691692 + HsTC2c DNA Tc2 150 332 -397 1389 160 4 9 chr12 64590810 64591035 -79691454 - AluJb SINE Alu -15 297 74 1166 265 40 19 chr12 64591037 64591411 -79691078 + HsTC2c DNA Tc2 345 726 -3 904 265 46 8 chr12 64591545 64591783 -79690706 + MIR SINE MIR 11 257 -5 353 262 93 18 chr12 64591790 64592001 -79690488 + L1MC4 LINE L1 6714 6912 -1049 302 298 106 47 chr12 64593804 64594039 -79688450 - MIR SINE MIR -12 250 2 2286 92 30 3 chr12 64594699 64595004 -79687485 + AluSq SINE Alu 1 313 0 22 0 0 0 chr12 64595021 64595043 -79687446 + AT_rich Low_complexity Low_complexity 1 22 0 254 366 73 0 chr12 64595233 64595356 -79687133 - L2 LINE L2 -25 3247 3116 241 206 95 0 chr12 64595408 64595471 -79687018 - MIR SINE MIR -73 189 121 1262 301 106 20 chr12 64595574 64596404 -79686085 + L2 LINE L2 2368 3281 -32 449 323 67 17 chr12 64596552 64596825 -79685664 - L2 LINE L2 -189 3083 2790 275 291 51 51 chr12 64598248 64598365 -79684124 + L2 LINE L2 3155 3271 -1 2078 126 3 0 chr12 64600273 64600566 -79681923 - AluSx SINE Alu -18 294 1 183 331 62 62 chr12 64600664 64600824 -79681665 + MIR SINE MIR 23 182 -80 2033 154 45 20 chr12 64601164 64601520 -79680969 + MLT1A1 LTR MaLR 1 365 0 29 28 0 0 chr12 64601877 64601913 -79680576 + AT_rich Low_complexity Low_complexity 1 36 0 389 286 35 30 chr12 64601932 64602163 -79680326 - L1ME4a LINE L1 -121 6000 5769 412 208 0 0 chr12 64602271 64602348 -79680141 + MER116 DNA Mariner 2 78 -2 353 221 122 30 chr12 64602354 64602485 -79680004 - MIR SINE MIR -114 148 6 423 294 124 10 chr12 64602914 64603108 -79679381 - MIR SINE MIR -12 250 35 2298 71 3 7 chr12 64604672 64604977 -79677512 - AluSg SINE Alu 0 304 1 184 261 196 11 chr12 64605555 64605647 -79676842 + MIR SINE MIR 141 249 -13 557 211 157 34 chr12 64605965 64606169 -79676320 - MER106A DNA MER1_type -7 229 1 577 324 37 0 chr12 64607427 64607699 -79674790 + L1MB2 LINE L1 5512 5793 -328 1691 168 3 23 chr12 64607743 64608046 -79674443 + L1MB2 LINE L1 5873 6169 -2 21 0 0 0 chr12 64609411 64609432 -79673057 + AT_rich Low_complexity Low_complexity 1 21 0 229 159 68 0 chr12 64609954 64609998 -79672491 - MIR SINE MIR -98 164 118 2610 124 22 0 chr12 64610788 64611144 -79671345 - THE1B LTR MaLR 0 364 1 183 234 78 31 chr12 64611893 64611957 -79670532 + MIR SINE MIR 90 156 -106 * 338 317 70 41 chr12 64611948 64612191 -79670298 - MIR SINE MIR 0 262 13 181 179 26 0 chr12 64612221 64612260 -79670229 + MIR3 SINE MIR 165 204 -4 614 286 100 0 chr12 64612766 64612997 -79669492 + MIR SINE MIR 8 261 -1 615 254 67 19 chr12 64613080 64613289 -79669200 + MIR SINE MIR 1 219 -43 2495 69 0 13 chr12 64614130 64614436 -79668053 - AluY SINE Alu -9 302 1 4313 167 43 15 chr12 64614939 64615681 -79666808 + L1MC3 LINE L1 6738 7509 -276 1716 166 26 29 chr12 64615681 64615988 -79666501 + AluSq SINE Alu 1 306 -7 4313 167 43 15 chr12 64615988 64616108 -79666381 + L1MC3 LINE L1 7509 7624 -161 397 332 76 26 chr12 64616439 64616678 -79665811 - L2 LINE L2 -232 3040 2790 277 299 51 51 chr12 64618101 64618218 -79664271 + L2 LINE L2 3155 3271 -1 272 310 178 0 chr12 64618757 64618886 -79663603 - MLT1I LTR MaLR -57 352 201 2005 127 10 0 chr12 64620126 64620417 -79662072 - AluSx SINE Alu -18 294 1 2073 168 122 3 chr12 64620452 64620838 -79661651 + MSTB1 LTR MaLR 1 432 0 441 239 31 27 chr12 64621077 64621246 -79661243 - MLT1I LTR MaLR -243 166 37 186 327 191 18 chr12 64622522 64622632 -79659857 + L2 LINE L2 3139 3267 -5 214 364 23 0 chr12 64624534 64624622 -79657867 - MIR SINE MIR -62 146 57 328 233 183 22 chr12 64625063 64625243 -79657246 + L1ME4a LINE L1 5676 5884 -237 1616 186 17 0 chr12 64626748 64627038 -79655451 - AluJb SINE Alu -16 296 2 183 80 0 0 chr12 64627041 64627066 -79655423 + (A)n Simple_repeat Simple_repeat 1 25 0 2118 106 0 14 chr12 64627329 64627643 -79654846 - AluSx SINE Alu 0 313 4 649 258 88 6 chr12 64628058 64628217 -79654272 + FAM SINE Alu 3 174 -1 362 283 25 8 chr12 64629683 64629803 -79652686 + L1MC4 LINE L1 7904 8025 -17 2128 99 10 19 chr12 64629804 64630117 -79652372 - AluSx SINE Alu -2 310 1 2615 46 0 0 chr12 64630151 64630453 -79652036 - AluY SINE Alu -9 302 1 2244 92 10 7 chr12 64631319 64631622 -79650867 + AluSq SINE Alu 1 304 -9 854 61 0 0 chr12 64632759 64632858 -79649631 - HY3 scRNA scRNA -2 99 1 2595 52 0 0 chr12 64635623 64635929 -79646560 + AluSp SINE Alu 1 306 -7 22 0 0 0 chr12 64636454 64636476 -79646013 + AT_rich Low_complexity Low_complexity 1 22 0 626 235 132 8 chr12 64636755 64636938 -79645551 - MIR SINE MIR -51 211 23 1256 209 175 12 chr12 64639595 64639996 -79642493 - MER31B LTR ERV1 0 466 1 238 270 40 63 chr12 64640431 64640557 -79641932 - MIR SINE MIR -92 170 48 404 270 182 62 chr12 64640630 64640866 -79641623 - L1ME4a LINE L1 -27 6094 5888 2400 98 0 6 chr12 64640866 64641181 -79641308 - AluSq SINE Alu 0 313 1 404 270 182 62 chr12 64641181 64641581 -79640908 - L1ME4a LINE L1 -233 5888 5340 2163 118 3 0 chr12 64641581 64641886 -79640603 - AluSx SINE Alu -6 306 1 404 270 182 62 chr12 64641886 64641983 -79640506 - L1ME4a LINE L1 -781 5340 5256 1897 155 10 0 chr12 64642968 64643258 -79639231 - AluSx SINE Alu -15 297 5 1844 147 0 20 chr12 64643499 64643799 -79638690 - AluSx SINE Alu -18 294 1 212 217 43 0 chr12 64644343 64644389 -79638100 + MIR3 SINE MIR 109 156 -52 2215 112 0 13 chr12 64644857 64645171 -79637318 + AluSx SINE Alu 1 310 -2 282 283 42 25 chr12 64645172 64645292 -79637197 - L1MC4 LINE L1 -17 8025 7904 180 294 29 29 chr12 64646065 64646133 -79636356 - MIR SINE MIR -98 164 97 588 245 98 7 chr12 64646775 64646918 -79635571 - FAM SINE Alu -17 158 3 2116 106 0 14 chr12 64647333 64647647 -79634842 + AluSx SINE Alu 4 313 0 183 80 0 0 chr12 64647910 64647935 -79634554 + (T)n Simple_repeat Simple_repeat 1 25 0 1641 176 35 17 chr12 64647938 64648228 -79634261 + AluJb SINE Alu 2 296 -16 332 199 177 22 chr12 64649733 64649914 -79632575 - L1ME4a LINE L1 -237 5884 5676 220 364 23 0 chr12 64650355 64650443 -79632046 + MIR SINE MIR 57 146 -62 195 327 191 18 chr12 64652344 64652454 -79630035 - L2 LINE L2 -5 3267 3139 401 241 31 27 chr12 64653730 64653899 -79628590 + MLT1I LTR MaLR 37 166 -243 1972 161 122 3 chr12 64654138 64654524 -79627965 - MSTB1 LTR MaLR 0 432 1 2076 126 3 0 chr12 64654559 64654852 -79627637 + AluSx SINE Alu 1 294 -18 276 291 51 51 chr12 64656760 64656877 -79625612 - L2 LINE L2 -1 3271 3155 448 323 67 17 chr12 64658301 64658574 -79623915 + L2 LINE L2 2790 3083 -189 1112 227 28 3 chr12 64658875 64659161 -79623328 + L1MC3 LINE L1 7493 7785 0 2005 124 0 4 chr12 64659177 64659451 -79623038 - AluSx SINE Alu -39 273 1 192 85 17 68 chr12 64660133 64660192 -79622297 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 1586 71 5 19 chr12 64660618 64660829 -79621660 + AluSg/x SINE Alu 102 309 -3 1356 176 144 0 chr12 64660833 64661089 -79621400 + AluJb SINE Alu 1 293 -19 417 20 0 0 chr12 64662035 64662085 -79620404 + (TG)n Simple_repeat Simple_repeat 2 51 0 1550 288 140 62 chr12 64662111 64662195 -79620294 - L2 LINE L2 -31 3282 3206 1448 151 177 26 chr12 64662195 64662539 -79619950 - MSTD LTR MaLR 0 396 1 1550 288 140 62 chr12 64662539 64663877 -79618612 - L2 LINE L2 -107 3206 1762 21 0 0 0 chr12 64664319 64664340 -79618149 + AT_rich Low_complexity Low_complexity 1 21 0 447 288 118 0 chr12 64664837 64664990 -79617499 - MIR SINE MIR -14 248 78 2141 204 25 72 chr12 64665522 64666124 -79616365 + MLT2B3 LTR ERVL 1 519 -1 2231 238 8 10 chr12 64666437 64666921 -79615568 + MER45B DNA AcHobo 1 483 -557 1510 205 117 14 chr12 64666948 64667383 -79615106 + MER45B DNA AcHobo 556 1035 -5 346 263 25 0 chr12 64667390 64667470 -79615019 - L2 LINE L2 -41 3231 3150 539 267 60 47 chr12 64667650 64667882 -79614607 + MLT1L LTR MaLR 177 411 -204 345 229 74 16 chr12 64667910 64668032 -79614457 + MLT1L LTR MaLR 468 596 -19 387 359 42 12 chr12 64668050 64668217 -79614272 - L2 LINE L2 -245 3068 2897 248 225 146 22 chr12 64669131 64669220 -79613269 - MIR SINE MIR -70 192 93 948 258 95 50 chr12 64669584 64669964 -79612525 - L2 LINE L2 0 3313 2917 325 221 58 128 chr12 64671024 64671196 -79611293 + L2 LINE L2 3153 3312 -1 775 260 54 0 chr12 64671464 64671668 -79610821 + MIR SINE MIR 15 229 -33 649 227 78 0 chr12 64671690 64671844 -79610645 - MLT1F1 LTR MaLR -262 305 140 24 35 0 53 chr12 64671863 64671920 -79610569 + AT_rich Low_complexity Low_complexity 1 54 0 233 111 22 0 chr12 64671938 64671983 -79610506 + MADE1 DNA Mariner 35 80 0 718 259 73 84 chr12 64672217 64672600 -79609889 - MLT1J2 LTR MaLR -19 431 53 26 0 0 0 chr12 64672804 64672830 -79609659 + AT_rich Low_complexity Low_complexity 1 26 0 2052 228 56 13 chr12 64672983 64673589 -79608900 - L1ME2 LINE L1 -2 6162 5531 20087 43 42 0 chr12 64673618 64676917 -79605572 + L1PA5 LINE L1 2809 6149 -5 302 283 0 0 chr12 64677051 64677164 -79605325 + L1M4 LINE L1 3402 3514 -2632 2661 105 34 27 chr12 64677172 64677531 -79604958 + THE1C-int LTR MaLR 1139 1503 -77 1858 142 49 3 chr12 64677531 64677819 -79604670 + AluSx SINE Alu 1 301 -11 2661 105 34 27 chr12 64677819 64677898 -79604591 + THE1C-int LTR MaLR 1503 1580 0 2068 97 120 20 chr12 64677898 64678239 -79604250 + THE1C LTR MaLR 1 375 0 240 212 0 0 chr12 64679486 64679552 -79602937 + (CGTG)n Simple_repeat Simple_repeat 1 66 0 270 176 82 2 chr12 64679676 64679763 -79602726 + L1ME LINE L1 5546 5639 -523 247 367 72 22 chr12 64680004 64680143 -79602346 - MIR SINE MIR -116 146 1 2214 145 60 24 chr12 64680652 64681285 -79601204 + MER39 LTR ERV1 1 707 0 502 303 159 10 chr12 64682628 64682846 -79599643 - MIR SINE MIR -13 249 1 2102 179 10 20 chr12 64682960 64683357 -79599132 - MSTD LTR MaLR 0 396 4 181 326 53 32 chr12 64684441 64684536 -79597953 + L2 LINE L2 3176 3272 0 380 143 14 0 chr12 64685405 64685475 -79597014 + CT-rich Low_complexity Low_complexity 1 71 0 358 169 45 56 chr12 64687250 64687339 -79595150 - MIR SINE MIR -114 148 61 216 184 0 0 chr12 64687350 64687388 -79595101 + (CAT)n Simple_repeat Simple_repeat 1 38 0 536 243 97 0 chr12 64687723 64687867 -79594622 - MIR SINE MIR -90 172 15 431 318 23 8 chr12 64688592 64688721 -79593768 - L2 LINE L2 -4 3268 3138 204 297 153 18 chr12 64690053 64690164 -79592325 + L2 LINE L2 3185 3310 -3 22 0 0 0 chr12 64690304 64690326 -79592163 + AT_rich Low_complexity Low_complexity 1 22 0 247 266 47 0 chr12 64690782 64690846 -79591643 - MIR3 SINE MIR -28 180 114 1669 189 0 50 chr12 64691041 64691364 -79591125 + AluJb SINE Alu 1 307 -5 284 342 54 0 chr12 64691453 64691564 -79590925 + L2 LINE L2 3154 3270 -2 188 189 19 75 chr12 64691789 64691842 -79590647 + L2 LINE L2 3171 3220 -93 558 250 83 24 chr12 64692854 64693022 -79589467 - MIR SINE MIR -2 260 83 289 361 31 15 chr12 64693040 64693170 -79589319 + MIR SINE MIR 3 134 -128 953 221 51 51 chr12 64693182 64693417 -79589072 + MIR SINE MIR 2 236 -26 410 287 87 31 chr12 64694487 64694682 -79587807 - MIR SINE MIR -12 250 45 2318 183 34 2 chr12 64694833 64695276 -79587213 - LTR32 LTR ERVL 0 471 15 1766 258 46 28 chr12 64696012 64696555 -79585934 + MLT2E LTR ERVL 1 553 -75 268 282 138 32 chr12 64697007 64697195 -79585294 - MLT1K LTR MaLR -25 563 356 580 307 36 44 chr12 64697430 64697795 -79584694 - MLT1J2 LTR MaLR -49 401 40 3104 138 29 31 chr12 64698106 64698382 -79584107 - MER34C LTR ERV1 0 585 310 2681 113 0 0 chr12 64698382 64698746 -79583743 - THE1B LTR MaLR 0 364 1 3104 138 29 31 chr12 64698746 64699051 -79583438 - MER34C LTR ERV1 -275 310 5 571 192 51 6 chr12 64699508 64699664 -79582825 + Charlie5 DNA MER1_type 38 200 -2412 * 1167 148 70 8 chr12 64699662 64699919 -79582570 + Charlie5 DNA MER1_type 2352 2624 0 2534 54 9 0 chr12 64701777 64702111 -79580378 - L1P3 LINE L1 -466 5688 5352 637 32 62 1 chr12 64704760 64704878 -79577611 - L1P3 LINE L1 -784 5382 5258 3656 45 5 0 chr12 64704878 64705325 -79577164 + L1PA7 LINE L1 5693 6141 -13 297 237 54 0 chr12 64705332 64705425 -79577064 + L1M4 LINE L1 2670 2767 -3379 505 307 29 0 chr12 64705773 64705913 -79576576 - MIR3 SINE MIR -44 164 21 1646 187 32 3 chr12 64706322 64706605 -79575884 + AluJb SINE Alu 1 291 -21 207 279 0 29 chr12 64706657 64706725 -79575764 + GA-rich Low_complexity Low_complexity 1 66 0 24 32 0 0 chr12 64707177 64707208 -79575281 + AT_rich Low_complexity Low_complexity 1 31 0 3688 275 111 24 chr12 64707214 64709006 -79573483 + L2 LINE L2 1331 3270 -43 201 302 159 16 chr12 64709029 64709155 -79573334 - MIR3 SINE MIR -48 160 17 551 240 24 34 chr12 64709323 64709531 -79572958 + L1MC4a LINE L1 5665 5870 -1938 703 222 33 38 chr12 64709637 64709849 -79572640 + MER46C DNA MER2_type 81 291 -47 260 267 158 27 chr12 64710378 64710524 -79571965 + MIR3 SINE MIR 34 198 -10 311 246 278 8 chr12 64710534 64710660 -79571829 - MER5A DNA MER1_type 0 189 30 563 176 15 15 chr12 64712012 64712148 -79570341 - Charlie7 DNA MER1_type -700 1912 1777 233 289 26 0 chr12 64712217 64712331 -79570158 + L1MC5 LINE L1 7609 7725 -236 353 224 0 0 chr12 64712332 64712408 -79570081 + Tigger4(Zombi) DNA MER2_type 2 77 -2654 * 1420 117 48 8 chr12 64712405 64712654 -79569835 + Tigger4(Zombi) DNA MER2_type 2468 2726 -5 9865 195 69 29 chr12 64712961 64714671 -79567818 + L1MCa LINE L1 20 1660 -4766 2229 88 3 7 chr12 64714671 64714966 -79567523 + AluY SINE Alu 1 294 -17 9865 195 69 29 chr12 64714966 64717299 -79565190 + L1MCa LINE L1 1660 4225 -2201 235 262 99 16 chr12 64717298 64717512 -79564977 + L1M4c LINE L1 1333 1569 -4815 * 1181 221 51 41 chr12 64717592 64717761 -79564728 - L1M4 LINE L1 -5046 1496 1330 2319 88 0 19 chr12 64717761 64718078 -79564411 - AluY SINE Alu 0 311 1 1181 221 51 41 chr12 64718078 64718319 -79564170 - L1M4 LINE L1 -5212 1330 1082 427 217 43 43 chr12 64718345 64718483 -79564006 + L1MB7 LINE L1 6036 6173 -11 345 229 16 41 chr12 64718510 64718632 -79563857 + L1MC5 LINE L1 7795 7913 -48 27 0 0 0 chr12 64720354 64720381 -79562108 + AT_rich Low_complexity Low_complexity 1 27 0 738 254 132 5 chr12 64722516 64722729 -79559760 - MIR SINE MIR -8 254 15 1366 192 30 54 chr12 64722854 64723009 -79559480 + MLT1A1 LTR MaLR 6 163 -202 2248 120 0 0 chr12 64723009 64723310 -79559179 + AluY SINE Alu 1 301 -10 1366 192 30 54 chr12 64723310 64723523 -79558966 + MLT1A1 LTR MaLR 163 365 0 2136 119 7 3 chr12 64724228 64724522 -79557967 + AluSq SINE Alu 1 295 -18 746 194 27 48 chr12 64725036 64725086 -79557403 + MER5A DNA MER1_type 1 51 -138 2165 173 31 7 chr12 64725086 64725502 -79556987 + MSTB LTR MaLR 1 426 0 746 194 27 48 chr12 64725502 64725637 -79556852 + MER5A DNA MER1_type 51 182 -7 246 326 77 66 chr12 64725941 64726137 -79556352 + L2 LINE L2 3075 3272 0 822 312 202 46 chr12 64726323 64726888 -79555601 + L2 LINE L2 189 665 -2649 1856 121 133 9 chr12 64726888 64727219 -79555270 - THE1C LTR MaLR 0 375 4 822 312 202 46 chr12 64727219 64727666 -79554823 + L2 LINE L2 665 1041 -2273 2008 147 39 18 chr12 64727666 64728048 -79554441 + MLT1B LTR MaLR 1 390 0 822 312 202 46 chr12 64728048 64728740 -79553749 + L2 LINE L2 1041 2160 -1154 191 366 54 32 chr12 64728822 64729043 -79553446 + L2 LINE L2 2835 3060 -212 201 281 85 37 chr12 64729137 64729219 -79553270 + L2 LINE L2 3210 3295 -18 3303 98 11 2 chr12 64729513 64729991 -79552498 + LTR3b LTR ERVK 1 482 -18 418 56 0 0 chr12 64729992 64730046 -79552443 + LTR3b LTR ERVK 447 500 0 1753 160 0 29 chr12 64730305 64730612 -79551877 + AluJo SINE Alu 1 298 -14 484 257 49 44 chr12 64731363 64731546 -79550943 + MIR SINE MIR 31 214 -48 1672 155 55 11 chr12 64731580 64731909 -79550580 + AluSx SINE Alu 1 341 0 457 258 7 0 chr12 64732416 64732433 -79550056 - L1MA10 LINE L1 0 6334 6318 377 242 42 36 chr12 64732433 64732598 -79549891 - L1ME1 LINE L1 -9 6157 5992 1227 203 38 4 chr12 64732599 64732865 -79549624 - L1ME1 LINE L1 -479 5687 5413 278 348 25 63 chr12 64733296 64733454 -79549035 + MIR3 SINE MIR 45 196 -12 521 248 168 45 chr12 64733848 64734158 -79548331 - L2 LINE L2 0 3313 2966 2523 74 0 0 chr12 64735815 64736124 -79546365 + AluY SINE Alu 1 309 -2 507 247 49 37 chr12 64736135 64736297 -79546192 + MIR SINE MIR 32 195 -67 2305 103 0 0 chr12 64736302 64736604 -79545885 + AluSc SINE Alu 1 302 -7 1208 240 118 45 chr12 64736718 64736868 -79545621 + L2 LINE L2 2530 2668 -645 2495 53 0 10 chr12 64736868 64737168 -79545321 - AluY SINE Alu -13 298 2 1208 240 118 45 chr12 64737168 64737754 -79544735 + L2 LINE L2 2668 3313 0 305 226 28 47 chr12 64738574 64738680 -79543809 + MER103 DNA DNA 46 149 -17 564 274 30 7 chr12 64738728 64738863 -79543626 - L2 LINE L2 -1 3271 3134 666 289 64 17 chr12 64739445 64739680 -79542809 + MIR SINE MIR 2 247 -15 1807 159 177 61 chr12 64740335 64740826 -79541663 - LTR10A LTR ERV1 -61 548 1 234 0 0 0 chr12 64741433 64741459 -79541030 + (CAG)n Simple_repeat Simple_repeat 2 27 0 434 219 43 85 chr12 64742410 64742504 -79539985 - MIR3 SINE MIR -3 205 119 2082 129 0 10 chr12 64742504 64742799 -79539690 + AluSg SINE Alu 7 298 -12 434 219 43 85 chr12 64742799 64742868 -79539621 - MIR3 SINE MIR -89 119 49 206 349 0 0 chr12 64742931 64742997 -79539492 - L2 LINE L2 -2 3270 3205 321 366 65 0 chr12 64743262 64743385 -79539104 - L2 LINE L2 -5 3267 3137 542 221 41 0 chr12 64743479 64743601 -79538888 + MER96 DNA MER1_type? 42 168 -7 412 226 73 29 chr12 64743676 64743790 -79538699 + MIR3 SINE MIR 68 189 -19 1710 170 48 17 chr12 64743971 64744260 -79538229 + AluJb SINE Alu 1 298 -14 2806 118 3 0 chr12 64744536 64744910 -79537579 + THE1C LTR MaLR 1 375 0 2212 117 0 16 chr12 64745274 64745581 -79536908 + AluSx SINE Alu 1 302 -10 508 249 89 18 chr12 64745895 64746064 -79536425 - MIR SINE MIR -51 211 31 2281 112 0 0 chr12 64746179 64746473 -79536016 + AluSg SINE Alu 1 294 -16 207 91 0 30 chr12 64746477 64746510 -79535979 + L2 LINE L2 3191 3222 -50 2210 109 0 7 chr12 64746873 64747176 -79535313 - AluSq SINE Alu -12 301 1 591 147 78 47 chr12 64747191 64747320 -79535169 - FLAM_C SINE Alu 0 133 1 1198 241 71 53 chr12 64748398 64748847 -79533642 - LTR37B LTR ERV1 -3 465 9 194 91 68 0 chr12 64750030 64750074 -79532415 + A-rich Low_complexity Low_complexity 5 51 0 2930 190 26 86 chr12 64750650 64750692 -79531797 + L1M1 LINE L1 17 60 -7505 2110 130 7 3 chr12 64750692 64750999 -79531490 + AluSx SINE Alu 1 308 -4 2930 190 26 86 chr12 64750999 64751657 -79530832 + L1M1 LINE L1 60 675 -6890 243 139 0 0 chr12 64751813 64751849 -79530640 + L1M1 LINE L1 17 52 -7513 1025 93 0 0 chr12 64751855 64751984 -79530505 + AluSq/x SINE Alu 1 129 -183 431 202 79 0 chr12 64751984 64752073 -79530416 + L1M1 LINE L1 272 367 -7198 * 5638 183 14 2 chr12 64752058 64753021 -79529468 + L1M1 LINE L1 882 1855 -5710 1252 117 157 9 chr12 64753021 64753251 -79529238 + MER21A LTR ERV1 1 264 -667 3077 147 35 53 chr12 64753256 64753822 -79528667 + MER21A LTR ERV1 376 931 0 3211 129 110 0 chr12 64753824 64754352 -79528137 + L1M1 LINE L1 1853 2438 -5127 3057 171 35 11 chr12 64754336 64755393 -79527096 + L1M1 LINE L1 3099 4168 -3397 * 2093 120 7 0 chr12 64755393 64755685 -79526804 - AluSx SINE Alu -18 294 1 211 217 43 0 chr12 64756159 64756205 -79526284 - MIR3 SINE MIR -52 156 109 1863 143 0 20 chr12 64756749 64757049 -79525440 + AluSx SINE Alu 1 294 -18 1882 155 10 0 chr12 64757290 64757580 -79524909 + AluSx SINE Alu 5 297 -15 2288 88 10 7 chr12 64758662 64758967 -79523522 + AluSx SINE Alu 1 306 -6 863 233 161 45 chr12 64758998 64759333 -79523156 + L1MC4a LINE L1 7194 7567 -241 340 76 379 0 chr12 64759331 64759397 -79523092 + L1MD3 LINE L1 7835 7925 -70 * 4970 130 13 21 chr12 64759930 64760768 -79521721 + L1MA2 LINE L1 5466 6296 -8 2196 112 0 7 chr12 64761316 64761619 -79520870 - AluSq SINE Alu -12 301 1 601 139 78 47 chr12 64761632 64761761 -79520728 - FLAM_C SINE Alu 0 133 1 1145 247 70 52 chr12 64762847 64763292 -79519197 - LTR37B LTR ERV1 -7 461 9 194 91 68 0 chr12 64764477 64764521 -79517968 + A-rich Low_complexity Low_complexity 5 51 0 2936 189 26 87 chr12 64765097 64765139 -79517350 + L1M1 LINE L1 17 60 -7505 2016 127 7 3 chr12 64765139 64765450 -79517039 + AluSx SINE Alu 1 312 0 2936 189 26 87 chr12 64765450 64766108 -79516381 + L1M1 LINE L1 60 675 -6890 243 139 0 0 chr12 64766264 64766300 -79516189 + L1MA2 LINE L1 17 52 -7513 1025 93 0 0 chr12 64766306 64766435 -79516054 + AluSq/x SINE Alu 1 129 -184 431 202 79 0 chr12 64766435 64766524 -79515965 + L1MA2 LINE L1 272 367 -7198 * 5737 179 12 2 chr12 64766509 64767473 -79515016 + L1MA2 LINE L1 882 1855 -5710 1270 113 157 9 chr12 64767473 64767703 -79514786 + MER21A LTR ERV1 1 264 -667 3077 147 35 53 chr12 64767708 64768274 -79514215 + MER21A LTR ERV1 376 931 0 3211 129 110 0 chr12 64768276 64768804 -79513685 + L1MA2 LINE L1 1853 2438 -5127 * 14969 164 22 38 chr12 64768788 64769847 -79512642 + L1MA2 LINE L1 3099 4173 -3550 2254 100 0 0 chr12 64769847 64770138 -79512351 - AluSc SINE Alu -18 291 1 14969 164 22 38 chr12 64770138 64772006 -79510483 + L1MA2 LINE L1 4173 5905 -1818 279 0 0 0 chr12 64772006 64772037 -79510452 + (CA)n Simple_repeat Simple_repeat 2 32 0 14969 164 22 38 chr12 64772037 64773820 -79508669 + L1MA2 LINE L1 5905 7715 -8 1133 131 104 27 chr12 64774322 64774543 -79507946 + MSTD LTR MaLR 155 392 -4 29 0 0 0 chr12 64775170 64775199 -79507290 + AT_rich Low_complexity Low_complexity 1 29 0 2204 125 0 0 chr12 64775396 64775707 -79506782 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr12 64776042 64776062 -79506427 + (T)n Simple_repeat Simple_repeat 1 20 0 408 356 119 47 chr12 64776427 64777047 -79505442 - L2 LINE L2 -345 2969 2305 250 259 12 35 chr12 64777185 64777270 -79505219 + MER34 LTR ERV1 50 132 -410 733 228 66 66 chr12 64777370 64777598 -79504891 + MER39 LTR ERV1 260 487 -220 67 82 0 0 chr12 64777598 64777756 -79504733 + AT_rich Low_complexity Low_complexity 1 158 0 409 187 73 24 chr12 64777761 64777884 -79504605 + MER34B LTR ERV1 437 565 0 1180 223 80 68 chr12 64777899 64778429 -79504060 - MER39 LTR ERV1 0 707 1 234 231 104 107 chr12 64778501 64778799 -79503690 + MER34 LTR ERV1 246 542 0 265 182 26 13 chr12 64778878 64778955 -79503534 + (TA)n Simple_repeat Simple_repeat 2 79 0 569 231 54 0 chr12 64779359 64779489 -79503000 - MER5A DNA MER1_type 0 189 53 279 130 93 0 chr12 64779500 64779554 -79502935 + MER39B LTR ERV1 386 444 -209 54 73 0 0 chr12 64779561 64779671 -79502818 + AT_rich Low_complexity Low_complexity 1 110 0 278 175 0 0 chr12 64779673 64779730 -79502759 + MER34 LTR ERV1 421 477 -65 186 211 183 56 chr12 64780770 64780841 -79501648 + MIR SINE MIR 64 143 -119 216 322 59 8 chr12 64780963 64781081 -79501408 - MIR SINE MIR -14 248 125 2688 48 0 0 chr12 64781755 64782066 -79500423 + AluY SINE Alu 1 311 0 340 76 379 0 chr12 64782499 64782565 -79499924 - L1MD3 LINE L1 -70 7925 7835 * 890 230 161 45 chr12 64782563 64782898 -79499591 - L1MC4a LINE L1 -241 7567 7194 2328 79 10 7 chr12 64782929 64783234 -79499255 - AluSx SINE Alu -6 306 1 2615 46 0 0 chr12 64783268 64783570 -79498919 - AluY SINE Alu -9 302 1 2214 99 10 7 chr12 64784436 64784739 -79497750 + AluSq SINE Alu 1 304 -9 854 61 0 0 chr12 64785879 64785978 -79496511 - HY3 scRNA scRNA -2 99 1 2675 51 0 0 chr12 64788741 64789054 -79493435 + AluSp SINE Alu 1 313 0 22 0 0 0 chr12 64789578 64789600 -79492889 + AT_rich Low_complexity Low_complexity 1 22 0 636 229 132 8 chr12 64789879 64790062 -79492427 - MIR SINE MIR -51 211 23 1437 207 175 12 chr12 64792719 64793120 -79489369 - MER31B LTR ERV1 0 466 1 223 269 34 67 chr12 64793562 64793681 -79488808 - MIR SINE MIR -100 162 48 232 255 155 47 chr12 64793754 64793990 -79488499 - L1ME4a LINE L1 -27 6094 5812 2400 98 0 6 chr12 64793990 64794305 -79488184 - AluSq SINE Alu 0 313 1 232 255 155 47 chr12 64794305 64794390 -79488099 - L1ME4a LINE L1 -309 5812 5738 355 269 204 83 chr12 64794405 64794705 -79487784 - L1ME4a LINE L1 -2107 5701 5340 2158 121 3 0 chr12 64794705 64795010 -79487479 - AluSx SINE Alu -6 306 1 355 269 204 83 chr12 64795010 64795107 -79487382 - L1ME4a LINE L1 -2468 5340 5256 1882 155 10 0 chr12 64796092 64796382 -79486107 - AluSx SINE Alu -15 297 5 1863 143 0 20 chr12 64796623 64796923 -79485566 - AluSx SINE Alu -18 294 1 211 217 43 0 chr12 64797467 64797513 -79484976 + MIR3 SINE MIR 109 156 -52 2166 118 0 13 chr12 64797987 64798301 -79484188 + AluSx SINE Alu 1 310 -2 362 283 25 8 chr12 64798302 64798422 -79484067 - L1MC4 LINE L1 -17 8025 7904 649 258 88 6 chr12 64799888 64800047 -79482442 - FAM SINE Alu -1 174 3 2119 106 0 14 chr12 64800462 64800776 -79481713 + AluSx SINE Alu 4 313 0 183 80 0 0 chr12 64801039 64801064 -79481425 + (T)n Simple_repeat Simple_repeat 1 25 0 1616 186 17 0 chr12 64801067 64801357 -79481132 + AluJb SINE Alu 2 296 -16 419 199 177 22 chr12 64802862 64803043 -79479446 - L1ME4a LINE L1 -237 5884 5676 214 364 23 0 chr12 64803484 64803572 -79478917 + MIR SINE MIR 57 146 -62 186 327 191 18 chr12 64805474 64805584 -79476905 - L2 LINE L2 -5 3267 3139 441 239 31 27 chr12 64806860 64807029 -79475460 + MLT1I LTR MaLR 37 166 -243 2150 161 122 3 chr12 64807268 64807654 -79474835 - MSTB1 LTR MaLR 0 432 1 2066 130 3 0 chr12 64807689 64807982 -79474507 + AluSx SINE Alu 1 294 -18 272 310 178 0 chr12 64809222 64809351 -79473138 + MLT1I LTR MaLR 201 352 -57 277 299 51 51 chr12 64809890 64810007 -79472482 - L2 LINE L2 -1 3271 3155 465 329 50 18 chr12 64811430 64811695 -79470794 + L2 LINE L2 2790 3070 -202 1276 293 107 21 chr12 64811851 64812681 -79469808 - L2 LINE L2 -32 3281 2368 241 206 95 0 chr12 64812784 64812847 -79469642 + MIR SINE MIR 121 189 -73 240 320 32 16 chr12 64812897 64813022 -79469467 + L2 LINE L2 3162 3288 -25 2104 106 26 22 chr12 64813253 64813565 -79468924 - AluSq SINE Alu 0 313 1 302 298 106 47 chr12 64814225 64814460 -79468029 + MIR SINE MIR 2 250 -12 302 265 99 33 chr12 64816263 64816474 -79466015 - L1MC5 LINE L1 -1049 6912 6688 912 261 46 8 chr12 64816482 64816720 -79465769 - MIR SINE MIR -5 257 11 1166 265 40 19 chr12 64816854 64817228 -79465261 - HsTC2c DNA Tc2 -3 726 345 1389 160 4 9 chr12 64817230 64817455 -79465034 + AluJb SINE Alu 74 297 -15 513 293 17 6 chr12 64817468 64817649 -79464840 - HsTC2c DNA Tc2 -397 332 150 582 284 82 10 chr12 64818921 64819129 -79463360 - MIR SINE MIR -9 253 31 2091 91 25 0 chr12 64819296 64819616 -79462873 - AluSg SINE Alu 0 327 1 219 291 89 73 chr12 64820849 64821000 -79461489 + MIR SINE MIR 8 163 -45 243 0 0 0 chr12 64821141 64821168 -79461321 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1625 52 5 0 chr12 64821169 64821360 -79461129 - L1PA5 LINE L1 -18 6136 5945 1040 17 0 0 chr12 64821360 64821476 -79461013 + L1PA5 LINE L1 5830 5945 -209 191 342 215 0 chr12 64821482 64821561 -79460928 - MIR SINE MIR -62 146 51 1356 180 148 16 chr12 64821562 64821873 -79460616 - MLT1A1 LTR MaLR -1 364 13 834 126 7 30 chr12 64822275 64822410 -79460079 - FLAM_C SINE Alu 0 133 2 7828 49 0 0 chr12 64824441 64825515 -79456974 - L1PA5 LINE L1 -4 6150 5077 243 278 0 0 chr12 64825676 64825730 -79456759 - MER5A DNA MER1_type -14 175 122 2359 147 28 37 chr12 64825746 64826191 -79456298 - MSTB1 LTR MaLR -2 430 1 418 195 24 0 chr12 64826191 64826273 -79456216 - MER5A DNA MER1_type -104 85 2 184 288 61 45 chr12 64826461 64826527 -79455962 - L2 LINE L2 -9 3263 3197 475 190 0 0 chr12 64826870 64826949 -79455540 - AluJ/FLAM SINE Alu -232 80 2 304 290 136 19 chr12 64827031 64827193 -79455296 - MIR SINE MIR -24 238 58 486 243 152 51 chr12 64827467 64827743 -79454746 - MLT1G1 LTR MaLR 0 595 292 2100 114 88 50 chr12 64827794 64827914 -79454575 + MLT1B LTR MaLR 1 115 -275 1768 152 3 96 chr12 64827914 64828236 -79454253 + AluJb SINE Alu 2 293 -9 2100 114 88 50 chr12 64828236 64828491 -79453998 + MLT1B LTR MaLR 115 390 0 617 169 169 54 chr12 64828491 64828657 -79453832 - MER58C DNA MER1_type -29 186 2 292 242 267 43 chr12 64828674 64828835 -79453654 - MLT1G1 LTR MaLR -339 210 14 4158 223 145 23 chr12 64828880 64830394 -79452095 + HsTC2 DNA Tc2 15 1894 -4 2201 107 17 0 chr12 64830574 64830872 -79451617 - AluSx SINE Alu -9 303 1 351 0 0 0 chr12 64830943 64830982 -79451507 + (TG)n Simple_repeat Simple_repeat 2 40 0 655 134 0 0 chr12 64831180 64831277 -79451212 - L1MC1 LINE L1 0 6333 6237 1410 164 17 4 chr12 64831281 64831512 -79450977 - AluJb SINE Alu -69 243 10 3522 222 15 32 chr12 64831526 64832192 -79450297 - L1M4 LINE L1 -750 5396 4747 734 187 8 45 chr12 64832192 64832326 -79450163 - FLAM_A SINE Alu -4 129 1 3522 222 15 32 chr12 64832326 64832542 -79449947 - L1M4 LINE L1 -1399 4747 4529 930 289 226 23 chr12 64832922 64834191 -79448298 + L2 LINE L2 1785 3312 -1 234 320 0 13 chr12 64834183 64834261 -79448228 + MIR SINE MIR 185 261 -1 * 252 286 14 0 chr12 64834349 64834419 -79448070 + L2 LINE L2 3242 3312 -1 360 206 137 38 chr12 64835920 64836051 -79446438 - L1MD3 LINE L1 -17 7978 7835 2085 188 146 60 chr12 64836052 64836429 -79446060 + MLT1E1 LTR MaLR 1 421 -203 3049 65 3 0 chr12 64836429 64836783 -79445706 + THE1A LTR MaLR 1 355 0 2085 188 146 60 chr12 64836783 64837007 -79445482 + MLT1E1 LTR MaLR 421 624 0 382 145 89 25 chr12 64837007 64837097 -79445392 - L1MD3 LINE L1 -151 7838 7539 1927 148 3 43 chr12 64837171 64837496 -79444993 - AluSq SINE Alu -1 312 1 253 268 165 0 chr12 64838576 64838673 -79443816 - L2 LINE L2 -40 3273 3161 209 318 0 24 chr12 64838790 64838875 -79443614 - L2 LINE L2 -336 2977 2895 272 298 50 66 chr12 64839395 64839516 -79442973 + L2 LINE L2 3150 3268 -4 403 213 38 0 chr12 64839730 64839810 -79442679 - MER3 DNA MER1_type -126 83 1 253 352 95 5 chr12 64839815 64840025 -79442464 - L2 LINE L2 -639 2675 2447 279 155 23 209 chr12 64840025 64840154 -79442335 - MLT2F LTR ERVL -7 656 552 301 313 16 10 chr12 64840198 64840313 -79442176 + CT-rich Low_complexity Low_complexity 2 198 0 689 161 54 0 chr12 64840317 64840447 -79442042 - MLT1E3 LTR MaLR -435 189 53 567 205 31 16 chr12 64840468 64840595 -79441894 - MLT2F LTR ERVL -534 129 1 216 205 0 0 chr12 64841524 64841563 -79440926 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 329 307 18 18 chr12 64841762 64841876 -79440613 - MER5B DNA MER1_type -4 174 61 3765 69 4 4 chr12 64841927 64842392 -79440097 - L1PA6 LINE L1 0 6154 5690 195 200 36 55 chr12 64842392 64842437 -79440052 - MER5B DNA MER1_type -132 46 1 2338 105 0 0 chr12 64842740 64843044 -79439445 - AluSx SINE Alu -8 304 1 261 0 0 0 chr12 64843046 64843075 -79439414 + (T)n Simple_repeat Simple_repeat 1 29 0 2433 70 0 3 chr12 64843504 64843803 -79438686 + AluY SINE Alu 1 298 -13 188 291 122 34 chr12 64844062 64844210 -79438279 + MIR SINE MIR 102 262 0 541 337 192 32 chr12 64844926 64845851 -79436638 - L3 LINE CR1 -73 1504 432 208 224 0 61 chr12 64846481 64846530 -79435959 + MIR SINE MIR 45 90 -172 549 326 101 49 chr12 64847422 64848017 -79434472 + L2 LINE L2 2602 3268 -4 254 301 128 23 chr12 64848096 64848229 -79434260 + MIR SINE MIR 49 195 -67 348 251 47 94 chr12 64848590 64848781 -79433708 + MIR SINE MIR 56 237 -25 4806 136 46 21 chr12 64849828 64849885 -79432604 - L1MB7 LINE L1 -16 6168 6114 1967 158 0 3 chr12 64849885 64850189 -79432300 + AluJb SINE Alu 1 303 -9 4806 136 46 21 chr12 64850189 64850957 -79431532 - L1MB7 LINE L1 -70 6114 5322 298 349 132 33 chr12 64851013 64851406 -79431083 + L2 LINE L2 2375 2806 -508 308 279 0 0 chr12 64851652 64851713 -79430776 - L2 LINE L2 -5 3267 3207 378 332 74 41 chr12 64851750 64852160 -79430329 - L2 LINE L2 -262 3051 2626 559 271 154 0 chr12 64852174 64852362 -79430127 + MIR SINE MIR 2 218 -44 225 314 50 21 chr12 64852705 64852845 -79429644 + MIR SINE MIR 4 147 -115 1960 54 0 29 chr12 64853893 64854135 -79428354 + AluY SINE Alu 77 311 0 2147 214 125 4 chr12 64854878 64855382 -79427107 - MLT1F1 LTR MaLR 0 567 3 1457 136 9 4 chr12 64855903 64856131 -79426358 + AluJb SINE Alu 1 229 -83 910 199 28 0 chr12 64857475 64857656 -79424833 - MER20 DNA MER1_type 0 219 34 1733 164 3 29 chr12 64858371 64858681 -79423808 + AluJb SINE Alu 1 302 -10 614 234 95 0 chr12 64859767 64859925 -79422564 + Charlie8 DNA MER1_type 103 275 -2142 186 158 0 26 chr12 64860396 64860434 -79422055 - L2 LINE L2 -18 3254 3218 187 328 16 0 chr12 64861078 64861139 -79421350 + MIR SINE MIR 81 142 -120 2491 119 19 16 chr12 64861324 64861693 -79420796 + THE1C LTR MaLR 1 370 -5 238 246 62 0 chr12 64864478 64864543 -79417946 - L2 LINE L2 -15 3257 3189 931 87 106 25 chr12 64864988 64865149 -79417340 - L1MA5A LINE L1 0 6297 6124 2749 243 44 29 chr12 64865162 64865957 -79416532 + L1MEc LINE L1 37 843 -5553 418 194 126 29 chr12 64866459 64866562 -79415927 + MER81 DNA DNA 2 114 0 27 29 0 0 chr12 64866848 64866882 -79415607 + AT_rich Low_complexity Low_complexity 1 34 0 423 200 172 14 chr12 64867066 64867211 -79415278 - MIR SINE MIR -10 252 85 263 70 0 23 chr12 64867617 64867660 -79414829 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 230 200 0 0 chr12 64868449 64868499 -79413990 + LTR66 LTR ERVL 399 448 -162 232 49 73 0 chr12 64868517 64868558 -79413931 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 251 143 0 18 chr12 64868622 64868678 -79413811 + (TA)n Simple_repeat Simple_repeat 1 55 0 355 35 17 35 chr12 64869388 64869446 -79413043 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 557 286 98 10 chr12 64869492 64869695 -79412794 - MIR SINE MIR -13 249 29 209 215 9 56 chr12 64869904 64870011 -79412478 + (TTAAA)n Simple_repeat Simple_repeat 4 105 0 8048 173 14 11 chr12 64870639 64872169 -79410320 - L1P LINE L1 -1252 4894 3360 2721 126 25 96 chr12 64872167 64872955 -79409534 + L1PA15 LINE L1 5217 5945 -220 * 2219 95 0 38 chr12 64873809 64874126 -79408363 - AluSq SINE Alu -7 306 2 390 360 18 6 chr12 64874189 64874353 -79408136 - LTR67 LTR ERVL -347 210 45 401 203 0 0 chr12 64874600 64874679 -79407810 - MER116 DNA Mariner -1 79 1 2840 280 26 23 chr12 64877720 64878901 -79403588 - L1M2 LINE L1 -4318 2033 863 1147 295 10 49 chr12 64878916 64879408 -79403081 - L1M2 LINE L1 -5771 510 38 24 0 0 0 chr12 64879692 64879716 -79402773 + AT_rich Low_complexity Low_complexity 1 24 0 206 241 0 0 chr12 64880156 64880210 -79402279 + (TA)n Simple_repeat Simple_repeat 2 55 0 537 285 65 19 chr12 64880285 64880545 -79401944 - L1MC4 LINE L1 -218 7824 7553 5012 33 0 0 chr12 64881498 64882048 -79400441 + L1PA3 LINE L1 5606 6155 0 250 332 120 3 chr12 64882110 64882263 -79400226 - MIR SINE MIR -58 204 38 403 236 37 56 chr12 64882429 64882590 -79399899 - MSTA LTR MaLR -11 417 260 207 0 0 0 chr12 64883611 64883634 -79398855 + (T)n Simple_repeat Simple_repeat 1 23 0 26 30 0 0 chr12 64883785 64883818 -79398671 + AT_rich Low_complexity Low_complexity 1 33 0 2136 116 3 0 chr12 64885615 64885899 -79396590 + AluSx SINE Alu 2 286 -26 206 220 0 20 chr12 64886305 64886355 -79396134 + L2 LINE L2 3224 3272 0 22 56 0 0 chr12 64888011 64888047 -79394442 + AT_rich Low_complexity Low_complexity 1 36 0 306 0 0 0 chr12 64890177 64890211 -79392278 + (TG)n Simple_repeat Simple_repeat 1 34 0 270 0 0 0 chr12 64890210 64890240 -79392249 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 3015 186 9 40 chr12 64891039 64891949 -79390540 - L1M3 LINE L1 -638 5545 4663 4669 155 31 5 chr12 64892247 64893217 -79389272 + L1MA1 LINE L1 5134 6128 -174 3657 32 0 12 chr12 64893383 64893815 -79388674 + L1PA3 LINE L1 5707 6133 -22 29 0 0 0 chr12 64894380 64894409 -79388080 + AT_rich Low_complexity Low_complexity 1 29 0 2540 70 3 0 chr12 64894801 64895102 -79387387 + AluSc SINE Alu 1 302 -7 2209 98 0 0 chr12 64895778 64896063 -79386426 - AluY SINE Alu -26 285 1 369 75 0 0 chr12 64896065 64896118 -79386371 + (T)n Simple_repeat Simple_repeat 1 53 0 363 225 219 27 chr12 64896531 64896586 -79385903 - MIR SINE MIR -32 230 187 1774 181 46 11 chr12 64896586 64896934 -79385555 - MER46B DNA MER2_type -1 235 1 363 225 219 27 chr12 64896934 64897065 -79385424 - MIR SINE MIR -75 187 8 254 217 33 22 chr12 64897150 64897242 -79385247 - L1M3 LINE L1 -3182 2964 2872 838 238 52 0 chr12 64897407 64897617 -79384872 + MIR SINE MIR 42 262 0 832 112 30 22 chr12 64898717 64898851 -79383638 + AluJo SINE Alu 1 135 -177 1573 168 7 27 chr12 64898851 64899149 -79383340 + AluJo SINE Alu 1 292 -20 34 65 0 0 chr12 64899221 64899283 -79383206 + AT_rich Low_complexity Low_complexity 1 62 0 216 338 0 0 chr12 64899317 64899388 -79383101 - MIR SINE MIR 0 262 192 748 225 238 38 chr12 64899388 64899753 -79382736 - Charlie7 DNA MER1_type -1887 725 288 348 284 157 0 chr12 64901182 64901316 -79381173 + MIR SINE MIR 34 188 -74 2657 92 22 8 chr12 64901335 64901705 -79380784 - THE1C LTR MaLR 0 375 1 399 311 13 48 chr12 64901960 64902136 -79380353 - L1MD2 LINE L1 -23 6143 5992 273 310 11 0 chr12 64902234 64902321 -79380168 + L2 LINE L2 3191 3278 -35 376 233 147 0 chr12 64902394 64902510 -79379979 - MIR SINE MIR -110 152 20 268 294 94 12 chr12 64903114 64903199 -79379290 - L2 LINE L2 -8 3305 3214 1858 161 24 0 chr12 64903885 64904176 -79378313 + AluSx SINE Alu 1 298 -14 231 210 65 0 chr12 64904494 64904556 -79377933 - L2 LINE L2 -215 3057 2992 524 242 121 9 chr12 64904874 64905097 -79377392 + MIR SINE MIR 7 254 -8 1787 171 21 0 chr12 64905104 64905385 -79377104 + AluJb SINE Alu 1 287 -25 180 362 0 0 chr12 64905705 64905763 -79376726 - MIR SINE MIR -131 77 20 455 269 75 96 chr12 64905881 64906390 -79376099 + L2 LINE L2 2624 3129 -143 2265 111 140 8 chr12 64906390 64906768 -79375721 - MSTA LTR MaLR 0 428 1 455 269 75 96 chr12 64906768 64906905 -79375584 + L2 LINE L2 3129 3267 -5 5771 121 49 12 chr12 64907237 64908201 -79374288 - L1MA9 LINE L1 0 6312 5314 421 252 79 44 chr12 64908224 64908263 -79374226 + L1MEc LINE L1 1459 1495 -5047 2873 16 0 0 chr12 64908263 64908574 -79373915 + AluYa5 SINE Alu 1 311 0 421 252 79 44 chr12 64908574 64908851 -79373638 + L1MEc LINE L1 1495 1709 -4833 812 231 12 0 chr12 64908876 64909036 -79373453 - AluSg/x SINE Alu -20 292 131 732 207 94 5 chr12 64909042 64909255 -79373234 - L1M4 LINE L1 -1966 4180 3949 2751 205 3 26 chr12 64909265 64909874 -79372615 - L1 LINE L1 -744 5402 4808 1980 78 6 118 chr12 64910337 64910668 -79371821 + AluSx SINE Alu 3 296 -16 234 89 36 18 chr12 64910895 64910951 -79371538 + T-rich Low_complexity Low_complexity 1 57 0 2051 110 38 3 chr12 64911632 64911923 -79370566 + AluSg SINE Alu 1 301 -9 2273 109 0 10 chr12 64912601 64912912 -79369577 + AluSg SINE Alu 1 308 -2 1018 196 226 19 chr12 64913230 64913495 -79368994 + 7SLRNA srpRNA srpRNA 1 320 0 22 0 0 0 chr12 64913724 64913746 -79368743 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr12 64913773 64913794 -79368695 + (TAATG)n Simple_repeat Simple_repeat 2 22 0 198 274 119 0 chr12 64914155 64914239 -79368250 - L2 LINE L2 0 3313 3220 2721 97 57 33 chr12 64914737 64915191 -79367298 + MER4C LTR ERV1 1 465 0 269 298 44 9 chr12 64915256 64915370 -79367119 - MER94 DNA DNA -1 133 16 1139 190 33 0 chr12 64916159 64916343 -79366146 + MER21B LTR ERV1 1 190 -673 3560 151 69 14 chr12 64916487 64917109 -79365380 + MER21B LTR ERV1 208 863 0 1992 146 0 7 chr12 64917209 64917503 -79364986 + AluSx SINE Alu 1 292 -20 2098 66 55 11 chr12 64917506 64917780 -79364709 + AluY SINE Alu 1 286 -25 22 0 0 0 chr12 64917780 64917802 -79364687 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 64918907 64918929 -79363560 + AT_rich Low_complexity Low_complexity 1 22 0 2362 69 3 50 chr12 64919475 64919795 -79362694 - AluSp SINE Alu -8 305 1 2131 112 0 27 chr12 64921304 64921599 -79360890 - AluSx SINE Alu -24 288 2 21 0 0 0 chr12 64921605 64921626 -79360863 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 64922144 64922168 -79360321 + AT_rich Low_complexity Low_complexity 1 24 0 249 278 93 37 chr12 64922172 64922280 -79360209 - L2 LINE L2 0 3313 3200 1981 144 20 3 chr12 64922639 64922944 -79359545 - AluJo SINE Alu -2 310 1 237 290 240 20 chr12 64923462 64923662 -79358827 + MIR SINE MIR 19 262 0 1694 130 27 15 chr12 64923956 64924217 -79358272 + AluJo SINE Alu 30 293 -19 269 242 225 8 chr12 64925260 64925380 -79357109 + HsTC2 DNA Tc2 3 148 -1750 1499 187 79 56 chr12 64925398 64925873 -79356616 - MER39 LTR ERV1 0 707 1 * 1988 226 50 25 chr12 64925873 64926468 -79356021 + HsTC2 DNA Tc2 1286 1895 -3 1393 203 150 20 chr12 64926823 64927222 -79355267 - MER39 LTR ERV1 -25 682 232 1178 184 154 54 chr12 64927398 64927729 -79354760 - MLT1A1 LTR MaLR -1 364 1 2485 144 10 13 chr12 64927826 64928209 -79354280 + MER47B DNA MER2_type 37 418 0 237 289 144 16 chr12 64928279 64928473 -79354016 - L1ME LINE L1 -216 5905 5687 234 303 110 13 chr12 64928692 64928847 -79353642 + MIR SINE MIR 86 255 -7 741 195 47 18 chr12 64929014 64929183 -79353306 + MER45A DNA AcHobo 1 174 -4 297 249 81 1 chr12 64929355 64929467 -79353022 - MIR SINE MIR -63 145 37 192 271 0 0 chr12 64931632 64931680 -79350809 - MIR SINE MIR -192 70 23 1700 181 33 3 chr12 64932256 64932555 -79349934 + AluJb SINE Alu 1 308 -4 297 286 111 41 chr12 64933654 64933825 -79348664 + MER5A DNA MER1_type 1 183 -6 237 267 168 20 chr12 64934172 64934273 -79348216 - L2 LINE L2 -9 3304 3189 563 279 160 0 chr12 64934572 64934809 -79347680 + L2 LINE L2 3019 3293 -20 2147 101 7 7 chr12 64935996 64936293 -79346196 + AluSx SINE Alu 1 297 -15 675 178 22 37 chr12 64937344 64937479 -79345010 - FLAM_A SINE Alu 0 133 1 281 246 380 15 chr12 64938275 64938617 -79343872 - LTR33 LTR ERVL 0 521 55 203 194 0 0 chr12 64939133 64939169 -79343320 + T-rich Low_complexity Low_complexity 1 36 0 230 222 56 19 chr12 64939339 64939393 -79343096 + MIR3 SINE MIR 114 169 -39 2061 105 3 14 chr12 64939544 64939838 -79342651 + AluSc SINE Alu 1 291 -18 387 205 291 13 chr12 64941510 64941661 -79340828 - MIR SINE MIR 0 262 70 235 255 62 87 chr12 64942727 64942935 -79339554 - MIR SINE MIR -50 212 10 288 0 0 0 chr12 64943411 64943443 -79339046 + (TG)n Simple_repeat Simple_repeat 2 33 0 1807 150 45 0 chr12 64944548 64944834 -79337655 - AluJb SINE Alu -13 299 1 2068 146 3 0 chr12 64945378 64945686 -79336803 - AluSx SINE Alu -3 309 1 210 308 115 0 chr12 64945724 64945776 -79336713 + L2 LINE L2 3201 3258 -14 311 321 37 9 chr12 64946026 64946135 -79336354 + L2 LINE L2 3157 3268 -4 330 67 0 0 chr12 64946161 64946206 -79336283 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 657 158 53 0 chr12 64946366 64946499 -79335990 - MER52A LTR ERV1 -906 849 710 6802 176 175 19 chr12 64946586 64948104 -79334385 + MER52A LTR ERV1 1 1755 0 342 333 83 0 chr12 64948109 64948229 -79334260 + MER5A DNA MER1_type 4 133 -56 1584 175 10 43 chr12 64948232 64948535 -79333954 - AluJb SINE Alu -17 295 3 2307 91 0 3 chr12 64948982 64949279 -79333210 - AluSc SINE Alu -13 296 1 478 325 110 8 chr12 64949769 64950006 -79332483 + MIR SINE MIR 1 261 -1 766 270 21 21 chr12 64950026 64950215 -79332274 + MIR SINE MIR 12 200 -62 222 317 92 25 chr12 64950206 64950326 -79332163 - L2 LINE L2 0 3313 3186 * 194 300 0 57 chr12 64950398 64950468 -79332021 + MIR SINE MIR 195 260 -2 360 0 0 0 chr12 64950807 64950847 -79331642 + (TG)n Simple_repeat Simple_repeat 2 41 0 387 0 0 0 chr12 64951054 64951097 -79331392 + (TG)n Simple_repeat Simple_repeat 2 44 0 906 234 27 61 chr12 64951697 64951958 -79330531 + MIR SINE MIR 11 262 0 2954 104 26 19 chr12 64952003 64952464 -79330025 + MER4C LTR ERV1 2 465 0 2119 92 0 4 chr12 64953479 64953751 -79328738 - AluSg SINE Alu -22 288 18 254 305 140 6 chr12 64953880 64954044 -79328445 + MLT1J2 LTR MaLR 1 186 -264 1187 216 74 37 chr12 64954061 64954492 -79327997 + MLT1C LTR MaLR 15 461 -6 262 280 0 13 chr12 64954621 64954696 -79327793 + MLT1J2 LTR MaLR 367 440 -10 512 89 0 0 chr12 64956824 64956903 -79325586 + L1PA2 LINE L1 6071 6149 -6 2597 258 29 31 chr12 64956911 64957189 -79325300 + L1ME1 LINE L1 5294 5571 -595 2090 146 0 3 chr12 64957189 64957497 -79324992 - AluSx SINE Alu -5 307 1 2597 258 29 31 chr12 64957497 64958088 -79324401 + L1ME1 LINE L1 5571 6161 -5 488 314 115 24 chr12 64958811 64959098 -79323391 - L1ME4a LINE L1 -177 5944 5632 33 0 0 23 chr12 64959146 64959173 -79323316 + AT_rich Low_complexity Low_complexity 1 28 -15 1665 173 3 30 chr12 64959173 64959473 -79323016 + AluJb SINE Alu 1 292 -20 33 0 0 23 chr12 64959473 64959489 -79323000 + AT_rich Low_complexity Low_complexity 28 43 0 1944 66 0 8 chr12 64959561 64959805 -79322684 + AluY SINE Alu 1 242 -69 1478 189 7 22 chr12 64959868 64960143 -79322346 + AluJb SINE Alu 11 281 -31 782 189 0 104 chr12 64960187 64960388 -79322101 + MER5A DNA MER1_type 3 182 -7 838 157 0 0 chr12 64960634 64960755 -79321734 - AluSq/x SINE Alu -191 121 1 25 31 0 0 chr12 64961993 64962025 -79320464 + AT_rich Low_complexity Low_complexity 1 32 0 347 212 10 40 chr12 64962078 64962177 -79320312 - L1MC5 LINE L1 -235 7726 7631 1681 167 42 9 chr12 64962418 64962748 -79319741 + MER2 DNA MER2_type 1 341 -3 3662 146 25 19 chr12 64962935 64963579 -79318910 + Tigger1 DNA MER2_type 1 648 -1770 1254 102 0 0 chr12 64963584 64963750 -79318739 + AluSq SINE Alu 148 313 0 2753 126 6 47 chr12 64963756 64964123 -79318366 + Tigger1 DNA MER2_type 640 984 -1434 1739 150 31 14 chr12 64964123 64964409 -79318080 - AluJo SINE Alu -21 291 1 2753 126 6 47 chr12 64964409 64964533 -79317956 + Tigger1 DNA MER2_type 984 1111 -1307 1719 169 27 0 chr12 64965023 64965319 -79317170 - AluJb SINE Alu -8 304 1 206 340 0 0 chr12 64965629 64965679 -79316810 + L2 LINE L2 3186 3235 -37 251 247 54 21 chr12 64965883 64965976 -79316513 - MIR SINE MIR -1 261 166 298 299 112 58 chr12 64966178 64966627 -79315862 + L2 LINE L2 2268 2831 -483 2080 153 18 0 chr12 64966667 64967008 -79315481 - MER7A DNA MER2_type 0 346 2 185 0 0 39 chr12 64967520 64967546 -79314943 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2299 110 0 10 chr12 64967875 64968183 -79314306 - AluSg SINE Alu -5 305 1 840 180 0 0 chr12 64968184 64968312 -79314177 - FLAM_A SINE Alu -5 128 1 1757 221 120 41 chr12 64968437 64969052 -79313437 + L1MC4 LINE L1 6458 7121 -921 1754 229 165 25 chr12 64969053 64969731 -79312758 + L1MC4 LINE L1 7270 8042 0 2500 81 0 0 chr12 64970353 64970660 -79311829 + AluY SINE Alu 1 307 -4 2455 201 62 10 chr12 64970959 64971891 -79310598 + L1MB7 LINE L1 4906 5934 -357 2531 63 0 3 chr12 64971891 64972194 -79310295 + AluY SINE Alu 1 302 -9 2455 201 62 10 chr12 64972194 64972567 -79309922 + L1MB7 LINE L1 5934 6286 -5 1458 164 20 3 chr12 64972564 64972863 -79309626 + L1MB7 LINE L1 5861 6164 -20 * 285 233 35 12 chr12 64973014 64973100 -79309389 - MIR SINE MIR -12 250 163 2085 90 23 0 chr12 64973268 64973567 -79308922 + L1PA14 LINE L1 5852 6157 -4 303 283 97 9 chr12 64974357 64974470 -79308019 - MIR3 SINE MIR -37 171 49 426 282 141 37 chr12 64974575 64974816 -79307673 + L2 LINE L2 2968 3233 -80 480 191 21 0 chr12 64975149 64975243 -79307246 - FLAM_A SINE Alu -11 131 36 2238 122 3 0 chr12 64975282 64975577 -79306912 - AluSx SINE Alu -16 296 1 21 36 0 0 chr12 64975809 64975837 -79306652 + AT_rich Low_complexity Low_complexity 1 28 0 234 330 62 62 chr12 64975886 64976065 -79306424 - MIR SINE MIR -79 183 5 2067 127 28 0 chr12 64980557 64980848 -79301641 - AluSx SINE Alu -13 299 1 504 185 56 9 chr12 64981206 64981314 -79301175 + Charlie1 DNA MER1_type 7 119 -2642 * 557 186 16 31 chr12 64981309 64981438 -79301051 + Charlie1 DNA MER1_type 1455 1581 -1180 2142 125 0 10 chr12 64981450 64981746 -79300743 + AluSq SINE Alu 1 293 -20 21 0 0 0 chr12 64981747 64981768 -79300721 + AT_rich Low_complexity Low_complexity 1 21 0 236 104 90 0 chr12 64981876 64981943 -79300546 + (TA)n Simple_repeat Simple_repeat 1 73 0 1094 73 67 13 chr12 64981956 64982106 -79300383 - AluSq SINE Alu -155 158 1 2944 178 208 18 chr12 64982107 64982645 -79299844 + Charlie1 DNA MER1_type 1634 2069 -692 2228 96 3 0 chr12 64982645 64982948 -79299541 + AluY SINE Alu 1 304 -7 2944 178 208 18 chr12 64982948 64983334 -79299155 + Charlie1 DNA MER1_type 2069 2733 -28 497 328 41 33 chr12 64984254 64984457 -79298032 + MIR SINE MIR 3 210 -52 1496 194 68 29 chr12 64984457 64984808 -79297681 + MLT1A1 LTR MaLR 1 365 0 497 328 41 33 chr12 64984808 64984848 -79297641 + MIR SINE MIR 210 248 -14 1429 229 16 37 chr12 64984971 64985347 -79297142 - MLT1A2 LTR MaLR -6 368 1 3908 110 14 17 chr12 64985870 64986028 -79296461 - L1MA3 LINE L1 0 6305 6148 213 39 0 0 chr12 64986028 64986054 -79296435 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2122 106 3 0 chr12 64986054 64986336 -79296153 - AluSp SINE Alu -30 283 1 3908 110 14 17 chr12 64986336 64986814 -79295675 - L1MA3 LINE L1 -155 6150 5670 4037 169 51 23 chr12 64986823 64986928 -79295561 - L1MB2 LINE L1 -4 6167 6066 2066 129 10 10 chr12 64986928 64987223 -79295266 - AluSx SINE Alu -15 297 3 4037 169 51 23 chr12 64987223 64988069 -79294420 - L1MB2 LINE L1 -105 6066 5190 2040 131 76 20 chr12 64988069 64988413 -79294076 + THE1B LTR MaLR 2 364 0 2433 88 14 0 chr12 64988413 64988775 -79293714 + THE1B-int LTR MaLR 1 367 -1213 850 122 14 7 chr12 64988779 64988926 -79293563 - AluY SINE Alu 0 311 164 22 56 0 0 chr12 64989864 64989900 -79292589 + AT_rich Low_complexity Low_complexity 1 36 0 1681 203 83 3 chr12 64991404 64991730 -79290759 + MLT-int LTR MaLR 1241 1592 -143 212 315 43 22 chr12 64992342 64992434 -79290055 + L2 LINE L2 3220 3313 0 22 35 0 0 chr12 64992492 64992521 -79289968 + AT_rich Low_complexity Low_complexity 1 29 0 2047 154 46 35 chr12 64992552 64992923 -79289566 - THE1C LTR MaLR 0 375 1 746 190 5 97 chr12 64992961 64993177 -79289312 + MER20 DNA MER1_type 24 219 0 317 219 55 0 chr12 64993474 64993547 -79288942 - MIR SINE MIR -146 116 40 1381 111 0 0 chr12 64995102 64995283 -79287206 - AluSc SINE Alu -9 300 120 929 262 40 56 chr12 64995771 64996338 -79286151 - L1MDb LINE L1 -4384 2022 1210 1803 142 14 0 chr12 64996348 64996660 -79285829 + AluSp SINE Alu 1 316 0 544 223 54 40 chr12 64996663 64996811 -79285678 - L1MD2 LINE L1 -16 6343 6194 341 269 37 0 chr12 64998198 64998306 -79284183 + L1ME LINE L1 5559 5670 -451 1222 73 0 0 chr12 64998392 64998542 -79283947 - L1PA7 LINE L1 0 6154 6005 260 307 53 33 chr12 64998734 64998884 -79283605 + L2 LINE L2 2593 2745 -569 192 186 47 0 chr12 64999095 64999138 -79283351 + L2 LINE L2 3047 3091 -181 211 349 47 0 chr12 64999341 64999447 -79283042 - L2 LINE L2 0 3272 3162 30 45 0 0 chr12 64999707 64999751 -79282738 + AT_rich Low_complexity Low_complexity 1 44 0 2273 89 14 0 chr12 65001402 65001693 -79280796 + AluSx SINE Alu 1 295 -17 406 284 86 67 chr12 65001694 65001828 -79280661 + L1ME LINE L1 3787 3917 -2229 1883 169 0 0 chr12 65001828 65002129 -79280360 + AluJb SINE Alu 1 301 -11 406 284 86 67 chr12 65002129 65002575 -79279914 + L1ME LINE L1 3917 4378 -1768 939 211 82 0 chr12 65002669 65002703 -79279786 + AluJb SINE Alu 84 114 -198 237 108 0 0 chr12 65002703 65002740 -79279749 + (CAA)n Simple_repeat Simple_repeat 3 39 0 939 211 82 0 chr12 65002740 65002899 -79279590 + AluJb SINE Alu 114 293 -19 324 261 48 85 chr12 65002940 65003212 -79279277 + L1ME LINE L1 4489 4750 -1396 630 207 84 44 chr12 65004675 65004878 -79277611 + MER92B LTR ERV1 426 636 0 1328 213 126 47 chr12 65005017 65005445 -79277044 - MLT1C LTR MaLR -3 464 3 195 42 0 0 chr12 65005533 65005557 -79276932 + (T)n Simple_repeat Simple_repeat 1 24 0 2311 100 0 7 chr12 65005583 65005884 -79276605 + AluSq SINE Alu 1 299 -14 41 48 0 0 chr12 65005919 65005981 -79276508 + AT_rich Low_complexity Low_complexity 1 62 0 276 174 0 0 chr12 65005981 65006027 -79276462 - L1M3 LINE L1 -576 5607 5562 1980 137 0 3 chr12 65006195 65006488 -79276001 - AluSx SINE Alu -20 292 1 375 155 0 0 chr12 65006648 65006706 -79275783 + Alu SINE Alu 237 294 -8 2354 98 0 0 chr12 65006810 65007107 -79275382 - AluSx SINE Alu -15 297 1 22 0 0 0 chr12 65007256 65007278 -79275211 + AT_rich Low_complexity Low_complexity 1 22 0 2265 135 19 38 chr12 65007288 65007658 -79274831 - THE1B LTR MaLR 0 364 2 1669 181 4 7 chr12 65007658 65007934 -79274555 - AluJo SINE Alu -31 281 7 637 291 87 17 chr12 65008991 65009412 -79273077 + L1ME LINE L1 5140 5585 -581 712 309 90 31 chr12 65009471 65009915 -79272574 - L1M4 LINE L1 -6065 477 8 2272 103 0 7 chr12 65010127 65010427 -79272062 - AluSg SINE Alu -11 299 2 2281 98 0 0 chr12 65011103 65011398 -79271091 + AluSp SINE Alu 1 295 -18 505 173 0 0 chr12 65011465 65011546 -79270943 - AluJ/FRAM SINE Alu -9 303 223 1829 128 50 10 chr12 65011548 65011845 -79270644 - MER51B LTR ERV1 -2 375 67 618 324 105 3 chr12 65011871 65012177 -79270312 - L2 LINE L2 -724 2590 2254 4115 117 116 68 chr12 65012207 65013609 -79268880 - pTR5 LTR ERV1 0 2438 377 354 224 216 0 chr12 65014588 65014713 -79267776 - MIR SINE MIR -10 252 101 4869 66 24 3 chr12 65014744 65015755 -79266734 + MER11A LTR ERVK 1 1266 0 308 321 18 28 chr12 65015755 65015864 -79266625 - MIR SINE MIR -154 108 1 2048 141 0 0 chr12 65016295 65016599 -79265890 - AluSx SINE Alu -6 306 3 883 136 0 0 chr12 65016837 65016962 -79265527 + AluSq/x SINE Alu 1 125 -188 1938 106 4 11 chr12 65016996 65017269 -79265220 + AluSx SINE Alu 12 282 -30 22 0 0 0 chr12 65017525 65017547 -79264942 + AT_rich Low_complexity Low_complexity 1 22 0 418 197 13 0 chr12 65017885 65017961 -79264528 - L2 LINE L2 -4 3268 3192 203 192 0 96 chr12 65019733 65019785 -79262704 + MIR SINE MIR 103 149 -113 1174 62 7 0 chr12 65019990 65020135 -79262354 - AluSp SINE Alu -167 146 1 1369 154 84 50 chr12 65020744 65021042 -79261447 - AluJo SINE Alu -4 308 1 753 149 25 0 chr12 65021043 65021164 -79261325 + AluJb SINE Alu 178 301 -11 1458 179 15 11 chr12 65021682 65021988 -79260501 - AluJb SINE Alu 0 325 19 544 322 96 41 chr12 65022601 65023002 -79259487 - L2 LINE L2 -540 2774 2327 2107 93 18 4 chr12 65023002 65023282 -79259207 - AluSx SINE Alu -27 285 2 544 322 96 41 chr12 65023282 65023485 -79259004 - L2 LINE L2 -987 2327 2137 238 333 64 50 chr12 65023540 65023837 -79258652 - L2 LINE L2 -1681 1633 1333 367 246 77 23 chr12 65025051 65025181 -79257308 - MIR SINE MIR -120 142 6 196 354 83 29 chr12 65025326 65025359 -79257130 + L2 LINE L2 2069 2099 -1215 1865 167 3 3 chr12 65025359 65025670 -79256819 - AluJb SINE Alu -1 311 1 196 354 83 29 chr12 65025670 65025876 -79256613 + L2 LINE L2 2099 2321 -993 2488 80 3 0 chr12 65025905 65026217 -79256272 - AluSq SINE Alu 0 313 1 2153 125 7 0 chr12 65026219 65026523 -79255966 - AluSp SINE Alu -7 306 1 1227 157 0 0 chr12 65027024 65027222 -79255267 - AluSg/x SINE Alu 0 310 113 242 222 0 0 chr12 65027243 65027288 -79255201 + Alu SINE Alu 250 294 -8 8247 88 18 12 chr12 65027476 65027524 -79254965 + THE1B-int LTR MaLR 456 502 -1078 2072 115 0 26 chr12 65027524 65027829 -79254660 + AluSx SINE Alu 1 297 -15 8247 88 18 12 chr12 65027829 65028898 -79253591 + THE1B-int LTR MaLR 502 1580 0 2320 92 104 18 chr12 65028898 65029233 -79253256 + THE1B LTR MaLR 1 364 0 9129 199 41 13 chr12 65029233 65031264 -79251225 - L1 LINE L1 -951 5195 3108 1559 243 3 0 chr12 65031264 65031618 -79250871 - L1 LINE L1 -3270 2876 2522 2334 116 0 0 chr12 65031635 65031945 -79250544 + AluSx SINE Alu 1 310 -2 1708 185 0 7 chr12 65032979 65033266 -79249223 + AluJb SINE Alu 1 285 -27 1695 187 3 13 chr12 65033434 65033749 -79248740 + AluJo SINE Alu 1 312 0 300 300 56 11 chr12 65034206 65034296 -79248193 - MIR3 SINE MIR -30 178 85 2086 93 36 11 chr12 65034314 65034592 -79247897 - AluSq SINE Alu -17 296 12 266 192 58 92 chr12 65034627 65034747 -79247742 - L1ME4a LINE L1 -38 6083 5968 714 302 121 55 chr12 65035025 65035126 -79247363 + L2 LINE L2 1857 1950 -1364 1885 155 0 31 chr12 65035126 65035443 -79247046 - AluJo SINE Alu 0 312 6 714 302 121 55 chr12 65035443 65035937 -79246552 + L2 LINE L2 1950 2491 -823 312 235 41 51 chr12 65036231 65036329 -79246160 + L2 LINE L2 3180 3276 -37 2464 76 0 10 chr12 65036500 65036814 -79245675 + AluY SINE Alu 1 311 0 1336 273 68 58 chr12 65036905 65037739 -79244750 - L2 LINE L2 0 3313 2469 521 282 87 28 chr12 65037731 65037968 -79244521 + MIR SINE MIR 6 261 -1 * 221 333 78 29 chr12 65038238 65038340 -79244149 + MIR SINE MIR 20 126 -82 1632 163 0 56 chr12 65038611 65038804 -79243685 - AluJb SINE Alu 0 312 143 2287 109 0 0 chr12 65038804 65039106 -79243383 - AluSg SINE Alu -8 302 1 1632 163 0 56 chr12 65039106 65039232 -79243257 - AluJb SINE Alu -169 143 11 26 82 0 0 chr12 65040305 65040366 -79242123 + AT_rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr12 65041140 65041161 -79241328 + AT_rich Low_complexity Low_complexity 1 21 0 2429 64 0 7 chr12 65041161 65041456 -79241033 - AluY SINE Alu -18 293 1 21 0 0 31 chr12 65041528 65041544 -79240945 + AT_rich Low_complexity Low_complexity 1 16 -15 1795 170 0 27 chr12 65041544 65041844 -79240645 - AluJb SINE Alu -20 292 1 21 0 0 31 chr12 65041844 65041859 -79240630 + AT_rich Low_complexity Low_complexity 16 31 0 2233 116 3 0 chr12 65041888 65042190 -79240299 + AluSx SINE Alu 1 303 -9 250 111 74 0 chr12 65042564 65042618 -79239871 - L1ME4a LINE L1 -1 6120 6063 294 320 78 105 chr12 65042692 65043153 -79239336 - L2 LINE L2 -38 3234 2796 1555 172 10 52 chr12 65043153 65043461 -79239028 + AluJb SINE Alu 1 295 -17 294 320 78 105 chr12 65043461 65043636 -79238853 - L2 LINE L2 -476 2796 2618 919 191 53 19 chr12 65043647 65043856 -79238633 + MER20 DNA MER1_type 1 216 -3 336 151 27 0 chr12 65044158 65044229 -79238260 - L1ME2 LINE L1 -1 6165 6087 315 0 0 0 chr12 65044289 65044324 -79238165 + (TA)n Simple_repeat Simple_repeat 1 35 0 2436 83 3 13 chr12 65044324 65044638 -79237851 - AluSp SINE Alu -2 311 1 306 143 14 29 chr12 65044980 65045050 -79237439 + L1ME2 LINE L1 6086 6154 -10 2159 97 3 29 chr12 65045050 65045358 -79237131 - AluSq SINE Alu -13 300 1 755 132 116 0 chr12 65045735 65045856 -79236633 + AluJb SINE Alu 1 135 -177 1395 183 53 43 chr12 65045856 65046156 -79236333 + AluJo SINE Alu 1 303 -9 723 62 0 0 chr12 65046475 65046572 -79235917 - L1PB3 LINE L1 0 6154 6058 21 57 0 0 chr12 65047879 65047914 -79234575 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr12 65048827 65048859 -79233630 + AT_rich Low_complexity Low_complexity 1 32 0 477 278 133 0 chr12 65049548 65049699 -79232790 + MIR SINE MIR 92 262 0 31 44 0 0 chr12 65050991 65051036 -79231453 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr12 65052186 65052209 -79230280 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 65052284 65052305 -79230184 + AT_rich Low_complexity Low_complexity 1 21 0 1711 19 19 0 chr12 65053050 65053260 -79229229 + L1PA4 LINE L1 5940 6153 -2 276 317 142 43 chr12 65053690 65054015 -79228474 + L2 LINE L2 1703 2059 -1255 404 264 80 68 chr12 65054157 65054407 -79228082 + MIR SINE MIR 1 253 -9 1709 199 0 0 chr12 65054707 65055004 -79227485 - AluJo SINE Alu -15 297 1 1777 154 25 0 chr12 65055028 65055308 -79227181 - AluSx SINE Alu -15 297 11 451 270 28 62 chr12 65055646 65055824 -79226665 - MLT1K LTR MaLR 0 588 417 396 337 11 70 chr12 65055977 65056164 -79226325 - MLT1K LTR MaLR -329 259 84 939 139 14 0 chr12 65056837 65056981 -79225508 - Tigger3(Golem) DNA MER2_type 0 3038 2893 2234 111 7 0 chr12 65057088 65057394 -79225095 - AluSc SINE Alu -1 308 1 745 222 67 21 chr12 65058507 65058701 -79223788 - MER3 DNA MER1_type -1 208 6 1814 163 7 20 chr12 65058819 65059114 -79223375 - AluJb SINE Alu -21 291 1 652 179 24 8 chr12 65059812 65059935 -79222554 + FLAM_C SINE Alu 2 126 -7 28 29 0 0 chr12 65059947 65059982 -79222507 + AT_rich Low_complexity Low_complexity 1 35 0 958 245 46 12 chr12 65060340 65060581 -79221908 + MIR SINE MIR 8 256 -6 1332 158 0 9 chr12 65060736 65060958 -79221531 - AluJb SINE Alu -6 306 87 357 329 58 22 chr12 65061077 65061214 -79221275 + MIR3 SINE MIR 7 148 -60 1830 144 0 7 chr12 65061231 65061501 -79220988 + AluJo SINE Alu 25 292 -20 2373 164 24 55 chr12 65062313 65062861 -79219628 + L1MB7 LINE L1 5651 6181 -3 21 71 0 0 chr12 65062919 65062961 -79219528 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr12 65063223 65063245 -79219244 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr12 65063357 65063387 -79219102 + AT_rich Low_complexity Low_complexity 1 30 0 456 264 8 48 chr12 65063656 65063781 -79218708 + L2 LINE L2 3189 3308 -5 329 317 106 0 chr12 65063948 65064109 -79218380 + MIR SINE MIR 48 225 -37 1735 192 0 26 chr12 65065318 65065630 -79216859 + AluJo SINE Alu 1 304 -8 2243 98 0 10 chr12 65065806 65066111 -79216378 + AluY SINE Alu 1 302 -9 238 242 45 0 chr12 65067200 65067266 -79215223 + MIR SINE MIR 98 166 -96 353 295 160 6 chr12 65067324 65067480 -79215009 - MIR SINE MIR -6 256 77 1265 185 16 82 chr12 65067621 65067924 -79214565 + AluJo SINE Alu 1 283 -29 1806 126 30 0 chr12 65067952 65068215 -79214274 + AluSx SINE Alu 35 305 -7 2381 111 11 0 chr12 65068736 65069087 -79213402 + HSMAR2 DNA Mariner 901 1255 -47 469 281 46 23 chr12 65069146 65069415 -79213074 + HAL1 LINE L1 770 1048 -1459 1953 145 3 3 chr12 65069415 65069711 -79212778 + AluJb SINE Alu 1 296 -16 469 281 46 23 chr12 65069711 65069744 -79212745 + HAL1 LINE L1 1048 1079 -1428 869 276 105 18 chr12 65069782 65070031 -79212458 + HAL1 LINE L1 1206 1503 -1004 2063 134 0 37 chr12 65070031 65070352 -79212137 + AluSx SINE Alu 1 309 -3 869 276 105 18 chr12 65070352 65070493 -79211996 + HAL1 LINE L1 1503 1630 -877 684 207 128 6 chr12 65070493 65070657 -79211832 - MER5A DNA MER1_type -2 187 4 769 298 43 14 chr12 65070665 65070785 -79211704 + HAL1 LINE L1 1633 1748 -759 2253 121 0 0 chr12 65070785 65071092 -79211397 + AluY SINE Alu 1 307 -4 769 298 43 14 chr12 65071092 65071253 -79211236 + HAL1 LINE L1 1748 1922 -585 396 0 0 0 chr12 65071431 65071475 -79211014 + (CA)n Simple_repeat Simple_repeat 1 44 0 404 211 29 0 chr12 65071503 65071607 -79210882 - L1M4 LINE L1 -2097 4049 3943 809 257 12 29 chr12 65071956 65072197 -79210292 + MER46C DNA MER2_type 101 337 -1 532 235 59 12 chr12 65072651 65072821 -79209668 - L1ME LINE L1 -436 5685 5508 27 0 0 0 chr12 65073140 65073167 -79209322 + AT_rich Low_complexity Low_complexity 1 27 0 1728 135 12 73 chr12 65073800 65074127 -79208362 + AluJo SINE Alu 1 307 -5 201 228 13 76 chr12 65075450 65075529 -79206960 + MER5C DNA MER1_type 1 74 -250 733 175 0 0 chr12 65075996 65076110 -79206379 + FLAM_C SINE Alu 6 119 -24 1680 182 0 7 chr12 65076450 65076752 -79205737 - AluJo SINE Alu -8 304 5 354 280 142 52 chr12 65076760 65077049 -79205440 - L1MC4a LINE L1 -1606 6202 5888 1873 84 104 0 chr12 65077063 65077313 -79205176 - AluSx SINE Alu -31 281 6 219 313 16 0 chr12 65078018 65078082 -79204407 - MIR SINE MIR -116 146 82 217 324 39 39 chr12 65078355 65078457 -79204032 - L2 LINE L2 -49 3223 3122 4685 134 46 21 chr12 65080948 65081002 -79201487 - L1MB7 LINE L1 -19 6165 6114 1913 164 0 3 chr12 65081002 65081306 -79201183 + AluJb SINE Alu 1 303 -9 4685 134 46 21 chr12 65081306 65082074 -79200415 - L1MB7 LINE L1 -70 6114 5322 294 349 132 33 chr12 65082130 65082523 -79199966 + L2 LINE L2 2375 2806 -508 302 279 0 0 chr12 65082769 65082830 -79199659 - L2 LINE L2 -5 3267 3207 369 332 74 41 chr12 65082867 65083277 -79199212 - L2 LINE L2 -262 3051 2626 573 271 154 0 chr12 65083291 65083479 -79199010 + MIR SINE MIR 2 218 -44 225 307 58 22 chr12 65083826 65083963 -79198526 + MIR SINE MIR 4 145 -117 1944 54 0 25 chr12 65085013 65085254 -79197235 + AluY SINE Alu 77 311 0 2109 214 125 4 chr12 65085997 65086501 -79195988 - MLT1F1 LTR MaLR 0 567 3 1453 136 9 4 chr12 65087022 65087250 -79195239 + AluJb SINE Alu 1 229 -83 852 203 28 6 chr12 65088594 65088776 -79193713 - MER20 DNA MER1_type 0 219 34 1697 168 3 29 chr12 65089493 65089803 -79192686 + AluJb SINE Alu 1 302 -10 614 235 95 0 chr12 65090889 65091054 -79191435 + Charlie8 DNA MER1_type 92 282 -2135 186 158 0 26 chr12 65091518 65091556 -79190933 - L2 LINE L2 -18 3254 3218 187 328 16 0 chr12 65092200 65092261 -79190228 + MIR SINE MIR 81 142 -120 2491 119 19 16 chr12 65092446 65092815 -79189674 + THE1C LTR MaLR 1 370 -5 208 77 51 0 chr12 65094726 65094765 -79187724 + (TGG)n Simple_repeat Simple_repeat 3 43 0 238 246 62 0 chr12 65095600 65095665 -79186824 - L2 LINE L2 -15 3257 3189 931 87 106 25 chr12 65096110 65096271 -79186218 - L1MA5A LINE L1 0 6297 6124 2734 244 44 28 chr12 65096284 65097078 -79185411 + L1MEc LINE L1 37 843 -5553 418 194 126 29 chr12 65097580 65097683 -79184806 + MER81 DNA DNA 2 114 0 27 29 0 0 chr12 65097969 65098003 -79184486 + AT_rich Low_complexity Low_complexity 1 34 0 423 200 172 14 chr12 65098187 65098332 -79184157 - MIR SINE MIR -10 252 85 263 70 0 23 chr12 65098738 65098781 -79183708 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 506 211 179 18 chr12 65099453 65099676 -79182813 - L1MC4 LINE L1 -1 8041 7783 300 342 37 31 chr12 65099765 65099926 -79182563 - L1MC5 LINE L1 -481 7480 7319 577 268 75 37 chr12 65099926 65100290 -79182199 - L1MC4 LINE L1 -571 7471 7123 1817 163 35 64 chr12 65100290 65100570 -79181919 - MLT1A1 LTR MaLR -2 363 95 2481 70 10 0 chr12 65100570 65100870 -79181619 - AluSg SINE Alu -7 303 1 1817 163 35 64 chr12 65100870 65100963 -79181526 - MLT1A1 LTR MaLR -270 95 1 577 268 75 37 chr12 65100963 65101095 -79181394 - L1MC4 LINE L1 -919 7123 6998 2178 110 0 0 chr12 65101095 65101401 -79181088 - AluSq SINE Alu 0 306 1 577 268 75 37 chr12 65101401 65101847 -79180642 - L1MC4 LINE L1 -1044 6998 6536 1361 69 0 0 chr12 65101923 65102083 -79180406 + U1 snRNA snRNA 4 163 -2 294 196 41 0 chr12 65102103 65102200 -79180289 + (TA)n Simple_repeat Simple_repeat 1 101 0 24 0 0 0 chr12 65102429 65102453 -79180036 + AT_rich Low_complexity Low_complexity 1 24 0 1977 136 3 23 chr12 65102557 65102865 -79179624 + AluJb SINE Alu 3 304 -8 195 293 262 18 chr12 65103147 65103311 -79179178 + L2 LINE L2 1881 2084 -1230 261 331 126 11 chr12 65103318 65103493 -79178996 + MIR SINE MIR 4 198 -64 580 269 99 0 chr12 65104196 65104337 -79178152 + MER5A DNA MER1_type 34 188 -1 308 366 62 0 chr12 65105315 65105427 -79177062 - L2 LINE L2 -5 3267 3149 294 259 62 27 chr12 65105896 65106008 -79176481 - MIR SINE MIR -145 117 2 2213 91 7 10 chr12 65106309 65106605 -79175884 - AluSx SINE Alu -17 295 1 281 309 158 39 chr12 65106645 65107156 -79175333 - L2 LINE L2 -568 2746 2175 390 281 130 52 chr12 65107446 65107638 -79174851 - L3 LINE CR1 0 1577 1371 252 276 69 23 chr12 65108063 65108150 -79174339 - L2 LINE L2 -1 3312 3222 2748 156 34 34 chr12 65108280 65108747 -79173742 + LTR24 LTR ERV1 1 467 0 193 216 95 54 chr12 65109397 65109471 -79173018 + MIR SINE MIR 136 212 -50 2043 121 0 3 chr12 65109478 65109788 -79172701 - AluSx SINE Alu 0 309 1 644 235 59 18 chr12 65109828 65109998 -79172491 - MIR SINE MIR -84 178 2 361 221 39 0 chr12 65111177 65111254 -79171235 + MER116 DNA Mariner 1 80 0 1429 222 103 6 chr12 65111260 65111571 -79170918 - MER58B DNA MER1_type 0 341 1 199 343 62 34 chr12 65112161 65112307 -79170182 + L2 LINE L2 2935 3084 -188 1643 188 41 22 chr12 65112385 65112705 -79169784 + MLT1A1 LTR MaLR 5 330 -35 1480 196 0 25 chr12 65112714 65112729 -79169760 - AluJo SINE Alu -15 297 283 375 41 0 0 chr12 65112729 65112778 -79169711 + (TC)n Simple_repeat Simple_repeat 2 50 0 1480 196 0 25 chr12 65112778 65113043 -79169446 - AluJo SINE Alu -29 283 24 983 273 30 45 chr12 65113195 65113532 -79168957 - MER102b DNA MER1_type -4 337 6 2928 3 0 0 chr12 65113871 65114182 -79168307 - AluY SINE Alu 0 311 1 396 251 166 43 chr12 65115067 65115254 -79167235 - MIR SINE MIR -2 260 51 212 284 30 0 chr12 65116227 65116294 -79166195 - MIR SINE MIR -125 137 69 361 298 0 30 chr12 65116306 65116437 -79166052 + MIR SINE MIR 136 262 0 309 116 0 0 chr12 65116475 65116518 -79165971 - L2 LINE L2 0 3272 3230 37 23 0 0 chr12 65117103 65117147 -79165342 + AT_rich Low_complexity Low_complexity 1 44 0 192 221 59 59 chr12 65117447 65117515 -79164974 + MIR SINE MIR 79 146 -62 242 364 10 0 chr12 65118328 65118427 -79164062 + MIR SINE MIR 9 108 -154 764 226 26 9 chr12 65119241 65119469 -79163020 + L1MD3 LINE L1 7684 7995 0 250 239 0 0 chr12 65120992 65121059 -79161430 + L1MC4 LINE L1 6637 6703 -1339 333 47 0 0 chr12 65121081 65121124 -79161365 + (CA)n Simple_repeat Simple_repeat 2 44 0 2464 76 3 0 chr12 65121669 65121972 -79160517 + AluY SINE Alu 1 304 -7 331 248 150 23 chr12 65122134 65122267 -79160222 + MIR SINE MIR 2 151 -111 2504 56 0 0 chr12 65122267 65122580 -79159909 + AluY SINE Alu 1 313 0 202 232 74 84 chr12 65122758 65122853 -79159636 + MIR SINE MIR 123 216 -46 2043 147 60 3 chr12 65123293 65123641 -79158848 - L1MB3 LINE L1 0 6183 5816 2366 168 31 7 chr12 65123643 65124087 -79158402 - L1MB3 LINE L1 -457 5723 5272 792 301 157 23 chr12 65124127 65124595 -79157894 - L2 LINE L2 -21 3292 2768 281 333 25 49 chr12 65125020 65125182 -79157307 - L2 LINE L2 -212 3060 2903 311 331 143 34 chr12 65125342 65125816 -79156673 - L2 LINE L2 -631 2683 2158 2065 134 3 0 chr12 65126363 65126653 -79155836 - AluSx SINE Alu -20 292 2 39126 77 19 7 chr12 65126926 65133013 -79149476 - L1PA6 LINE L1 0 6154 11 185 0 40 0 chr12 65133143 65133168 -79149321 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2158 105 10 3 chr12 65133395 65133691 -79148798 + AluSg SINE Alu 1 298 -12 2032 132 6 6 chr12 65133701 65134012 -79148477 + AluSx SINE Alu 1 311 -1 2430 87 0 0 chr12 65135330 65135641 -79146848 - AluY SINE Alu 0 311 1 450 65 0 0 chr12 65135643 65135705 -79146784 + (T)n Simple_repeat Simple_repeat 1 62 0 447 225 219 27 chr12 65136118 65136173 -79146316 - MIR SINE MIR -32 230 187 1842 184 46 11 chr12 65136173 65136521 -79145968 - MER46B DNA MER2_type -1 235 1 447 225 219 27 chr12 65136521 65136652 -79145837 - MIR SINE MIR -75 187 8 264 217 33 22 chr12 65136737 65136829 -79145660 - L1M4 LINE L1 -3182 2964 2872 902 245 46 4 chr12 65136963 65137204 -79145285 + MIR SINE MIR 16 262 0 826 112 30 22 chr12 65138304 65138438 -79144051 + AluJo SINE Alu 1 135 -177 1559 168 7 27 chr12 65138438 65138736 -79143753 + AluJo SINE Alu 1 292 -20 34 65 0 0 chr12 65138808 65138870 -79143619 + AT_rich Low_complexity Low_complexity 1 62 0 234 338 0 0 chr12 65138904 65138975 -79143514 - MIR SINE MIR 0 262 192 767 227 238 38 chr12 65138975 65139340 -79143149 - Charlie7 DNA MER1_type -1887 725 288 391 284 157 0 chr12 65140769 65140903 -79141586 + MIR SINE MIR 34 188 -74 2830 92 22 5 chr12 65140922 65141291 -79141198 - THE1C LTR MaLR 0 375 1 399 311 13 48 chr12 65141546 65141722 -79140767 - L1MD2 LINE L1 -23 6143 5992 273 310 11 0 chr12 65141820 65141907 -79140582 + L2 LINE L2 3191 3278 -35 376 233 147 0 chr12 65141980 65142096 -79140393 - MIR SINE MIR -110 152 20 268 294 94 12 chr12 65142700 65142785 -79139704 - L2 LINE L2 -8 3305 3214 1858 161 24 0 chr12 65143471 65143762 -79138727 + AluSx SINE Alu 1 298 -14 231 210 65 0 chr12 65144080 65144142 -79138347 - L2 LINE L2 -215 3057 2992 524 242 121 9 chr12 65144460 65144683 -79137806 + MIR SINE MIR 7 254 -8 1787 171 21 0 chr12 65144690 65144971 -79137518 + AluJb SINE Alu 1 287 -25 180 362 0 0 chr12 65145289 65145347 -79137142 - MIR SINE MIR -131 77 20 455 269 75 96 chr12 65145465 65145974 -79136515 + L2 LINE L2 2624 3129 -143 2265 111 140 8 chr12 65145974 65146352 -79136137 - MSTA LTR MaLR 0 428 1 455 269 75 96 chr12 65146352 65146489 -79136000 + L2 LINE L2 3129 3267 -5 5771 121 49 12 chr12 65146821 65147785 -79134704 - L1MA9 LINE L1 0 6312 5314 421 252 79 44 chr12 65147808 65147847 -79134642 + L1MEc LINE L1 1459 1495 -5047 2873 16 0 0 chr12 65147847 65148158 -79134331 + AluYa5 SINE Alu 1 311 0 421 252 79 44 chr12 65148158 65148435 -79134054 + L1MEc LINE L1 1495 1709 -4833 812 231 12 0 chr12 65148460 65148620 -79133869 - AluSg/x SINE Alu -20 290 129 732 207 94 5 chr12 65148626 65148839 -79133650 - L1M4 LINE L1 -1966 4180 3949 2751 205 3 26 chr12 65148849 65149458 -79133031 - L1 LINE L1 -744 5402 4808 1980 78 6 118 chr12 65149921 65150252 -79132237 + AluSx SINE Alu 3 296 -16 234 89 36 18 chr12 65150479 65150535 -79131954 + T-rich Low_complexity Low_complexity 1 57 0 2051 110 38 3 chr12 65151216 65151507 -79130982 + AluSg SINE Alu 1 301 -9 2273 109 0 10 chr12 65152185 65152496 -79129993 + AluSg SINE Alu 1 308 -2 1018 196 226 19 chr12 65152814 65153079 -79129410 + 7SLRNA srpRNA srpRNA 1 320 0 22 0 0 0 chr12 65153308 65153330 -79129159 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr12 65153357 65153378 -79129111 + (TAATG)n Simple_repeat Simple_repeat 2 22 0 198 274 119 0 chr12 65153739 65153823 -79128666 - L2 LINE L2 0 3313 3220 2721 97 57 33 chr12 65154321 65154775 -79127714 + MER4C LTR ERV1 1 465 0 269 298 44 9 chr12 65154840 65154954 -79127535 - MER94 DNA DNA -1 133 16 1139 190 33 0 chr12 65155743 65155927 -79126562 + MER21B LTR ERV1 1 190 -673 3560 151 69 14 chr12 65156071 65156693 -79125796 + MER21B LTR ERV1 208 863 0 1992 146 0 7 chr12 65156793 65157087 -79125402 + AluSx SINE Alu 1 292 -20 2098 66 55 11 chr12 65157090 65157364 -79125125 + AluY SINE Alu 1 286 -25 22 0 0 0 chr12 65157364 65157386 -79125103 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 65158491 65158513 -79123976 + AT_rich Low_complexity Low_complexity 1 22 0 2362 69 3 50 chr12 65159059 65159379 -79123110 - AluSp SINE Alu -8 305 1 2131 112 0 27 chr12 65160887 65161182 -79121307 - AluSx SINE Alu -24 288 2 21 0 0 0 chr12 65161188 65161209 -79121280 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 65161727 65161751 -79120738 + AT_rich Low_complexity Low_complexity 1 24 0 249 278 93 37 chr12 65161755 65161863 -79120626 - L2 LINE L2 0 3313 3200 1981 144 20 3 chr12 65162222 65162527 -79119962 - AluJo SINE Alu -2 310 1 237 290 240 20 chr12 65163045 65163245 -79119244 + MIR SINE MIR 19 262 0 1589 135 32 12 chr12 65163539 65163791 -79118698 + AluJo SINE Alu 30 286 -26 2017 141 0 3 chr12 65163796 65164094 -79118395 + AluJb SINE Alu 1 297 -15 675 178 22 37 chr12 65165145 65165280 -79117209 - FLAM_A SINE Alu 0 133 1 260 246 380 15 chr12 65166076 65166418 -79116071 - LTR33 LTR ERVL 0 521 55 203 194 0 0 chr12 65166934 65166970 -79115519 + T-rich Low_complexity Low_complexity 1 36 0 210 222 56 19 chr12 65167140 65167194 -79115295 + MIR3 SINE MIR 114 169 -39 2096 105 3 14 chr12 65167345 65167639 -79114850 + AluSc SINE Alu 1 291 -18 267 302 39 50 chr12 65169107 65169286 -79113203 - MIR SINE MIR -27 235 59 250 213 287 9 chr12 65169381 65169489 -79113000 + MER104 DNA Tc2 30 167 -13 1970 139 0 26 chr12 65169690 65169999 -79112490 + AluJb SINE Alu 1 301 -11 705 185 154 0 chr12 65171115 65171277 -79111212 + MER5A DNA MER1_type 1 187 -2 342 311 145 48 chr12 65171964 65172225 -79110264 + L3 LINE CR1 567 880 -697 1787 149 20 34 chr12 65172225 65172520 -79109969 + AluJb SINE Alu 10 300 -12 342 311 145 48 chr12 65172520 65172650 -79109839 + L3 LINE CR1 880 996 -581 244 139 38 177 chr12 65172666 65172824 -79109665 - MIR SINE MIR 0 262 127 786 258 62 0 chr12 65173074 65173314 -79109175 + MIR SINE MIR 8 262 0 199 386 20 0 chr12 65173335 65173436 -79109053 + L3 LINE CR1 1392 1494 -83 2296 97 0 34 chr12 65173475 65173796 -79108693 + AluSg SINE Alu 1 310 0 1612 176 72 0 chr12 65173807 65174152 -79108337 - AluJo SINE Alu 0 367 2 962 279 25 19 chr12 65174244 65174559 -79107930 - MLT1J1 LTR MaLR -127 319 3 378 140 35 0 chr12 65174791 65174848 -79107641 - AluSg/x SINE Alu -123 177 119 260 245 41 51 chr12 65175354 65175452 -79107037 - L2 LINE L2 -8 3305 3209 461 289 191 40 chr12 65176277 65176606 -79105883 - L2 LINE L2 -1 3312 2902 2513 111 5 16 chr12 65176606 65176974 -79105515 + THE1B LTR MaLR 1 364 0 461 289 191 40 chr12 65176974 65177073 -79105416 - L2 LINE L2 -411 2902 2819 195 42 0 0 chr12 65177179 65177203 -79105286 + (TG)n Simple_repeat Simple_repeat 2 25 0 184 277 0 0 chr12 65177551 65177598 -79104891 - MER5A DNA MER1_type 0 189 143 * 213 147 0 0 chr12 65177565 65177599 -79104890 + MER5B DNA MER1_type 15 48 -130 203 261 0 31 chr12 65177752 65177817 -79104672 + MER5A DNA MER1_type 61 123 -66 382 296 43 0 chr12 65177831 65177946 -79104543 - MIR3 SINE MIR -46 162 43 1744 183 38 0 chr12 65178180 65178470 -79104019 + AluJb SINE Alu 1 301 -11 344 278 64 69 chr12 65178528 65178701 -79103788 + MIR3 SINE MIR 20 191 -17 26 30 0 0 chr12 65179308 65179341 -79103148 + AT_rich Low_complexity Low_complexity 1 33 0 1566 203 7 7 chr12 65179341 65179627 -79102862 - AluJo SINE Alu -24 288 3 2252 92 0 0 chr12 65179641 65179954 -79102535 - AluSc SINE Alu 0 313 1 415 333 110 8 chr12 65180444 65180681 -79101808 + MIR SINE MIR 1 261 -1 704 270 21 21 chr12 65180701 65180890 -79101599 + MIR SINE MIR 12 200 -62 396 0 0 0 chr12 65181482 65181526 -79100963 + (TG)n Simple_repeat Simple_repeat 2 45 0 387 0 0 0 chr12 65181733 65181776 -79100713 + (TG)n Simple_repeat Simple_repeat 2 44 0 817 234 27 61 chr12 65182375 65182636 -79099853 + MIR SINE MIR 11 262 0 3079 104 24 19 chr12 65182681 65183143 -79099346 + MER4C LTR ERV1 2 465 0 2151 92 0 4 chr12 65184158 65184431 -79098058 - AluSg SINE Alu -21 289 18 321 305 140 6 chr12 65184560 65184724 -79097765 + MLT1J2 LTR MaLR 1 186 -264 1366 210 73 43 chr12 65184733 65185172 -79097317 + MLT1C LTR MaLR 10 461 -6 282 294 0 12 chr12 65185301 65185386 -79097103 + MLT1J2 LTR MaLR 367 450 0 248 332 143 12 chr12 65187653 65187981 -79094508 + L2 LINE L2 2607 2977 -337 246 304 32 24 chr12 65188087 65188212 -79094277 + L2 LINE L2 3183 3308 -5 189 324 95 0 chr12 65189020 65189094 -79093395 + MIR3 SINE MIR 93 173 -35 1367 172 25 17 chr12 65190021 65190259 -79092230 - LTR32 LTR ERVL 0 471 232 461 153 14 0 chr12 65190274 65190346 -79092143 - LTR32 LTR ERVL -383 88 16 329 204 61 31 chr12 65191349 65191447 -79091042 - L1ME4a LINE L1 -56 6065 5965 3996 174 31 47 chr12 65192064 65193619 -79088870 - HERVH LTR ERV1 -5192 1516 1 1391 162 113 72 chr12 65193619 65194051 -79088438 - LTR7 LTR ERV1 0 450 1 214 222 71 50 chr12 65198150 65198249 -79084240 - L3 LINE CR1 -1224 353 253 1515 170 11 15 chr12 65198250 65198515 -79083974 - AluJb SINE Alu -25 287 24 278 271 0 0 chr12 65199394 65199464 -79083025 - MER103 DNA DNA -49 117 48 362 355 68 19 chr12 65199662 65199969 -79082520 + L2 LINE L2 2134 2455 -859 369 262 78 63 chr12 65201263 65201534 -79080955 - L3b LINE CR1 -197 1386 1112 3253 178 29 16 chr12 65202097 65202715 -79079774 + L1MB7 LINE L1 5542 6167 -17 342 0 0 0 chr12 65204254 65204292 -79078197 + (TG)n Simple_repeat Simple_repeat 2 39 0 1236 101 0 0 chr12 65204557 65204725 -79077764 - AluYa5 SINE Alu -8 303 136 1368 216 62 10 chr12 65205286 65205387 -79077102 + AluJb SINE Alu 3 97 -215 2454 83 3 0 chr12 65205387 65205689 -79076800 + AluSp SINE Alu 2 304 -9 1368 216 62 10 chr12 65205689 65205878 -79076611 + AluJb SINE Alu 97 308 -4 234 0 0 0 chr12 65206385 65206411 -79076078 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 1832 171 3 10 chr12 65206601 65206911 -79075578 - AluJo SINE Alu -4 308 1 903 152 0 0 chr12 65207462 65207594 -79074895 + AluJo SINE Alu 3 134 -178 40 21 0 0 chr12 65207594 65207641 -79074848 + AT_rich Low_complexity Low_complexity 1 47 0 754 271 103 20 chr12 65207701 65208003 -79074486 - MER76 LTR ERV -34 654 328 805 227 11 0 chr12 65208018 65208203 -79074286 - MER76 LTR ERV -501 187 1 573 304 122 47 chr12 65208233 65208334 -79074155 - L1MC4a LINE L1 -1879 5929 5837 2354 104 0 0 chr12 65208334 65208633 -79073856 - AluSx SINE Alu -13 299 1 573 304 122 47 chr12 65208633 65209103 -79073386 - L1MC4a LINE L1 -1971 5837 5315 2155 123 0 7 chr12 65209453 65209753 -79072736 - AluSx SINE Alu -14 298 1 227 277 84 0 chr12 65211000 65211083 -79071406 - L2 LINE L2 0 3313 3224 511 353 47 26 chr12 65211348 65211886 -79070603 - L2 LINE L2 -547 2767 2219 805 218 36 0 chr12 65211936 65212101 -79070388 + MER45A DNA AcHobo 1 171 -7 312 350 58 0 chr12 65212103 65212223 -79070266 - L2 LINE L2 -30 3242 3116 228 211 18 0 chr12 65213069 65213126 -79069363 - L2 LINE L2 -2 3270 3213 463 252 170 0 chr12 65214508 65214643 -79067846 - MER5A DNA MER1_type -6 183 26 866 234 5 28 chr12 65214674 65214888 -79067601 - MER3 DNA MER1_type 0 209 1 218 250 0 69 chr12 65214917 65214989 -79067500 - L2 LINE L2 0 3272 3206 195 69 0 0 chr12 65215575 65215604 -79066885 + (T)n Simple_repeat Simple_repeat 1 29 0 304 331 48 0 chr12 65216501 65216625 -79065864 + MIR3 SINE MIR 45 174 -34 501 333 49 58 chr12 65216864 65217294 -79065195 + L2 LINE L2 2845 3270 -2 1914 133 3 53 chr12 65217304 65217626 -79064863 + AluJb SINE Alu 1 306 -6 1579 188 10 16 chr12 65217759 65218062 -79064427 - AluJo SINE Alu -11 301 1 1895 172 13 62 chr12 65218488 65218872 -79063617 - MLT1A1 LTR MaLR 0 365 1 2171 99 0 18 chr12 65219265 65219549 -79062940 + AluSg SINE Alu 1 279 -31 1905 43 0 17 chr12 65220032 65220263 -79062226 + AluY SINE Alu 83 309 -2 745 229 83 10 chr12 65222369 65222561 -79059928 + L1ME3A LINE L1 5532 5737 -433 2671 77 100 5 chr12 65222564 65222955 -79059534 - LTR7 LTR ERV1 -3 447 20 1109 231 115 26 chr12 65222956 65223346 -79059143 + L1ME3A LINE L1 5744 6168 -2 2103 124 0 0 chr12 65224861 65225184 -79057305 + AluSx SINE Alu 1 323 0 268 239 30 30 chr12 65225517 65225584 -79056905 - L2 LINE L2 0 3272 3206 2178 105 32 0 chr12 65225616 65225901 -79056588 + AluSq SINE Alu 1 294 -19 269 242 225 8 chr12 65226948 65227068 -79055421 + HsTC2 DNA Tc2 3 148 -1750 1499 187 79 56 chr12 65227086 65227561 -79054928 - MER39 LTR ERV1 0 707 1 * 1988 226 50 25 chr12 65227561 65228156 -79054333 + HsTC2 DNA Tc2 1286 1895 -3 1393 203 150 20 chr12 65228511 65228910 -79053579 - MER39 LTR ERV1 -25 682 232 1178 184 154 54 chr12 65229086 65229417 -79053072 - MLT1A1 LTR MaLR -1 364 1 2485 144 10 13 chr12 65229514 65229897 -79052592 + MER47B DNA MER2_type 37 418 0 237 289 144 16 chr12 65229967 65230161 -79052328 - L1ME LINE L1 -216 5905 5687 234 303 110 13 chr12 65230380 65230535 -79051954 + MIR SINE MIR 86 255 -7 741 195 47 18 chr12 65230702 65230871 -79051618 + MER45A DNA AcHobo 1 174 -4 297 249 81 1 chr12 65231043 65231155 -79051334 - MIR SINE MIR -63 145 37 310 289 72 7 chr12 65233002 65233154 -79049335 + MIR SINE MIR 36 197 -65 217 177 229 62 chr12 65233288 65233384 -79049105 + MIR SINE MIR 118 229 -33 527 287 63 11 chr12 65233747 65233921 -79048568 + MER58A DNA MER1_type 5 187 -37 231 300 0 0 chr12 65234651 65234711 -79047778 + L2 LINE L2 3208 3267 -5 213 23 47 47 chr12 65235122 65235165 -79047324 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr12 65235214 65235235 -79047254 + AT_rich Low_complexity Low_complexity 1 21 0 282 143 0 0 chr12 65235321 65235370 -79047119 + (TC)n Simple_repeat Simple_repeat 2 50 0 792 234 0 0 chr12 65235684 65235842 -79046647 + FRAM SINE Alu 1 158 -8 1556 195 0 11 chr12 65235992 65236254 -79046235 + AluJb SINE Alu 1 259 -53 648 250 104 9 chr12 65236405 65236617 -79045872 - MIR SINE MIR -29 233 2 346 248 7 117 chr12 65236642 65236787 -79045702 - MIR SINE MIR -61 147 19 1134 178 35 0 chr12 65238529 65238731 -79043758 - MER3 DNA MER1_type 0 209 1 182 62 31 0 chr12 65238821 65238853 -79043636 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1857 161 4 0 chr12 65238855 65239135 -79043354 - AluJb SINE Alu -31 281 1 442 246 163 35 chr12 65241405 65241530 -79040959 + MIR SINE MIR 12 120 -142 1829 180 0 0 chr12 65241530 65241824 -79040665 + AluJb SINE Alu 1 294 -18 442 246 163 35 chr12 65241824 65241901 -79040588 + MIR SINE MIR 120 240 -22 2087 110 7 32 chr12 65242266 65242574 -79039915 - AluSx SINE Alu -12 300 1 2428 64 3 14 chr12 65242737 65243033 -79039456 - AluSp SINE Alu -20 293 1 247 309 95 30 chr12 65243227 65243395 -79039094 - L2 LINE L2 -212 3060 2882 1016 134 39 22 chr12 65243928 65244107 -79038382 + L1PA16 LINE L1 5981 6162 -4 281 238 168 20 chr12 65244984 65245085 -79037404 - L2 LINE L2 -9 3304 3189 22 35 0 0 chr12 65245978 65246007 -79036482 + AT_rich Low_complexity Low_complexity 1 29 0 364 273 45 26 chr12 65246161 65246315 -79036174 + MIR SINE MIR 98 254 -8 367 211 22 11 chr12 65247370 65247460 -79035029 + L2 LINE L2 3219 3309 -4 460 243 21 14 chr12 65247547 65247687 -79034802 - MER112 DNA MER1_type -14 246 106 360 0 0 0 chr12 65248806 65248846 -79033643 + (CA)n Simple_repeat Simple_repeat 2 41 0 190 286 175 45 chr12 65249807 65249961 -79032528 - MIR SINE MIR -75 187 14 333 0 0 0 chr12 65250240 65250277 -79032212 + (TC)n Simple_repeat Simple_repeat 2 38 0 315 294 139 36 chr12 65250797 65251049 -79031440 - L2 LINE L2 -1 3312 3035 386 316 31 44 chr12 65251712 65251937 -79030552 - L2 LINE L2 -14 3299 3078 332 289 77 0 chr12 65251966 65252070 -79030419 - L2 LINE L2 -535 2779 2668 241 221 12 93 chr12 65252079 65252165 -79030324 + L2 LINE L2 2541 2619 -695 275 248 86 29 chr12 65252187 65252292 -79030197 - L2 LINE L2 -697 2617 2507 399 312 88 28 chr12 65252917 65253167 -79029322 + L3 LINE CR1 324 588 -989 2191 129 0 3 chr12 65253325 65253636 -79028853 + AluSq SINE Alu 2 311 -2 765 268 132 104 chr12 65253780 65254637 -79027852 + L3 LINE CR1 634 1514 -63 1978 107 35 0 chr12 65255430 65255691 -79026798 + AluSx SINE Alu 27 296 -16 326 269 149 29 chr12 65255973 65256148 -79026341 + MIR SINE MIR 54 249 -13 372 133 0 0 chr12 65257097 65257157 -79025332 + MER5B DNA MER1_type 2 61 -117 244 349 62 16 chr12 65257379 65257571 -79024918 - MIR SINE MIR -33 229 29 333 221 14 17 chr12 65257956 65258107 -79024382 - MIR SINE MIR 0 262 70 211 252 46 80 chr12 65259173 65259324 -79023165 - MIR SINE MIR -50 212 67 288 0 0 0 chr12 65259857 65259889 -79022600 + (TG)n Simple_repeat Simple_repeat 2 33 0 1805 150 45 0 chr12 65260994 65261280 -79021209 - AluJb SINE Alu -13 299 1 2072 146 3 0 chr12 65261824 65262132 -79020357 - AluSx SINE Alu -3 309 1 191 308 115 0 chr12 65262170 65262222 -79020267 + L2 LINE L2 3201 3258 -14 268 321 37 9 chr12 65262472 65262581 -79019908 + L2 LINE L2 3157 3268 -4 330 67 0 0 chr12 65262607 65262652 -79019837 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 235 324 151 35 chr12 65263176 65263706 -79018783 + L2 LINE L2 2467 3057 -215 2159 142 0 0 chr12 65263805 65264108 -79018381 - AluSx SINE Alu -9 303 1 330 145 159 0 chr12 65264346 65264415 -79018074 + MADE1 DNA Mariner 1 80 0 318 211 34 1 chr12 65264507 65264690 -79017799 - MLT1J LTR MaLR -193 422 110 2220 126 0 0 chr12 65264785 65265095 -79017394 - AluSx SINE Alu -2 310 1 1552 176 66 4 chr12 65265271 65265543 -79016946 + AluJo SINE Alu 1 289 -23 1623 126 58 0 chr12 65266910 65267187 -79015302 - L1MA7 LINE L1 -1 6290 5998 620 238 21 0 chr12 65267219 65267362 -79015127 - MIR SINE MIR -70 192 47 1590 148 6 100 chr12 65269612 65269735 -79012754 + AluJb SINE Alu 1 134 -178 491 0 0 17 chr12 65269735 65269795 -79012694 + (TAA)n Simple_repeat Simple_repeat 2 60 0 1590 148 6 100 chr12 65269795 65269982 -79012507 + AluJb SINE Alu 134 282 -30 1790 183 0 7 chr12 65270018 65270302 -79012187 + AluJo SINE Alu 1 282 -30 248 284 127 30 chr12 65270720 65270854 -79011635 + MIR SINE MIR 5 151 -111 668 244 134 33 chr12 65272014 65272321 -79010168 - MLT1F LTR MaLR -24 518 181 671 209 8 8 chr12 65272345 65272474 -79010015 + FLAM_A SINE Alu 5 133 0 468 226 14 7 chr12 65272475 65272621 -79009868 + GA-rich Low_complexity Low_complexity 2 148 0 596 217 133 26 chr12 65272627 65272816 -79009673 - MLT1F LTR MaLR -336 213 25 559 147 110 29 chr12 65273180 65273316 -79009173 + MER69 DNA AcHobo 2380 2526 0 2338 93 0 0 chr12 65273537 65273826 -79008663 + AluSc SINE Alu 1 289 -20 2065 139 14 0 chr12 65273835 65274130 -79008359 + AluSx SINE Alu 1 299 -13 1581 175 10 43 chr12 65274577 65274880 -79007609 + AluJb SINE Alu 3 295 -17 290 333 83 0 chr12 65274883 65275003 -79007486 - MER5A DNA MER1_type -56 133 4 7445 175 174 19 chr12 65275008 65276527 -79005962 - MER52A LTR ERV1 0 1755 1 1219 139 11 0 chr12 65276614 65276794 -79005695 + MER52A LTR ERV1 710 891 -864 448 274 48 0 chr12 65277107 65277231 -79005258 + MER94 DNA DNA 4 133 -1 192 271 0 0 chr12 65278181 65278229 -79004260 - MIR SINE MIR -192 70 23 1737 176 33 3 chr12 65278805 65279106 -79003383 + AluJb SINE Alu 1 310 -2 297 286 111 41 chr12 65280203 65280374 -79002115 + MER5A DNA MER1_type 1 183 -6 237 267 168 20 chr12 65280721 65280822 -79001667 - L2 LINE L2 -9 3304 3189 563 279 160 0 chr12 65281121 65281358 -79001131 + L2 LINE L2 3019 3293 -20 2579 68 3 0 chr12 65282545 65282852 -78999637 + AluSp SINE Alu 1 308 -5 1499 166 8 27 chr12 65282874 65283133 -78999356 - AluJo SINE Alu -19 293 40 300 262 220 7 chr12 65283348 65283489 -78999000 + MER5A DNA MER1_type 19 189 0 1971 129 3 14 chr12 65284145 65284432 -78998057 + AluSx SINE Alu 1 284 -28 269 307 158 0 chr12 65285012 65285126 -78997363 + L2 LINE L2 3137 3268 -4 2188 122 0 0 chr12 65285810 65286104 -78996385 + AluSg SINE Alu 1 294 -16 1128 158 0 16 chr12 65286565 65286749 -78995740 + AluSg/x SINE Alu 119 299 -11 1642 162 45 17 chr12 65286797 65287087 -78995402 + AluJb SINE Alu 1 298 -14 319 237 150 52 chr12 65287101 65287388 -78995101 + L1MEd LINE L1 849 1163 -4956 2156 133 0 3 chr12 65287477 65287778 -78994711 + AluSx SINE Alu 1 300 -12 313 302 92 24 chr12 65287807 65288102 -78994387 + L1MEd LINE L1 1359 1673 -4637 307 216 108 10 chr12 65288412 65288514 -78993975 + L1MEd LINE L1 2840 2951 -3178 2492 61 3 3 chr12 65288819 65289116 -78993373 - AluSp SINE Alu -15 298 2 279 203 0 0 chr12 65289163 65289222 -78993267 + L1M4 LINE L1 4561 4619 -1527 356 171 0 40 chr12 65289265 65289341 -78993148 + MER5A DNA MER1_type 3 75 -114 765 167 0 0 chr12 65289345 65289459 -78993030 + FLAM_C SINE Alu 6 119 -24 33 0 0 0 chr12 65289465 65289498 -78992991 + AT_rich Low_complexity Low_complexity 1 33 0 488 212 106 0 chr12 65289499 65289612 -78992877 + MER5A DNA MER1_type 61 185 -4 379 296 112 13 chr12 65289644 65289877 -78992612 + L1ME3A LINE L1 5684 5939 -231 405 289 64 0 chr12 65290114 65290270 -78992219 + MIR SINE MIR 2 167 -95 631 240 16 0 chr12 65290980 65291109 -78991380 + FLAM_A SINE Alu 3 133 0 2092 121 14 3 chr12 65291131 65291428 -78991061 + AluSx SINE Alu 1 300 -12 187 280 110 34 chr12 65291476 65291594 -78990895 - L2 LINE L2 0 3272 3146 2996 142 0 6 chr12 65292023 65292509 -78989980 - L1 LINE L1 -1043 5103 4621 210 71 0 0 chr12 65293529 65293557 -78988932 + (T)n Simple_repeat Simple_repeat 1 28 0 261 0 0 0 chr12 65294614 65294643 -78987846 + (A)n Simple_repeat Simple_repeat 1 29 0 540 113 144 62 chr12 65294643 65294740 -78987749 - AluJb SINE Alu -206 106 2 180 0 0 0 chr12 65294749 65294769 -78987720 + (T)n Simple_repeat Simple_repeat 1 20 0 474 291 82 32 chr12 65296422 65296642 -78985847 - MIR SINE MIR -4 258 28 3485 139 108 24 chr12 65298094 65298584 -78983905 - MER50 LTR ERV1 -23 711 151 1616 138 92 11 chr12 65298584 65298866 -78983623 - AluJb SINE Alu -7 305 1 3485 139 108 24 chr12 65298866 65299031 -78983458 - MER50 LTR ERV1 -583 151 1 329 275 106 7 chr12 65299430 65299572 -78982917 + L1MEd LINE L1 1046 1201 -4918 309 344 66 3 chr12 65299681 65299969 -78982520 + HAL1 LINE L1 1441 1746 -761 976 176 6 18 chr12 65300430 65300595 -78981894 + AluJo SINE Alu 120 282 -30 577 202 0 0 chr12 65301547 65301651 -78980838 - U13 snRNA snRNA 0 104 1 1760 142 64 50 chr12 65301907 65302267 -78980222 + THE1C LTR MaLR 1 365 -10 33 0 0 0 chr12 65303592 65303625 -78978864 + AT_rich Low_complexity Low_complexity 1 33 0 802 207 219 49 chr12 65303633 65304044 -78978445 + MER113 DNA MER1_type? 36 516 -5 26 0 0 0 chr12 65308794 65308820 -78973669 + AT_rich Low_complexity Low_complexity 1 26 0 1883 143 39 26 chr12 65309381 65309689 -78972800 + AluJo SINE Alu 1 312 0 836 228 99 80 chr12 65309981 65310446 -78972043 + MLT1H LTR MaLR 1 483 -66 1626 205 3 10 chr12 65310917 65311210 -78971279 + AluJb SINE Alu 1 291 -21 1665 149 115 0 chr12 65312038 65312307 -78970182 - AluJo SINE Alu -12 300 1 392 160 30 60 chr12 65312473 65312573 -78969916 + L1MC5 LINE L1 7731 7827 -134 390 213 65 19 chr12 65312573 65312681 -78969808 + LTR37B LTR ERV1 1 113 -355 686 198 0 0 chr12 65312694 65312815 -78969674 - MER58B DNA MER1_type -3 338 218 2623 36 0 0 chr12 65312897 65313204 -78969285 + AluY SINE Alu 1 307 -4 182 246 140 0 chr12 65313642 65313699 -78968790 - MIR SINE MIR -74 188 124 2778 242 36 10 chr12 65313699 65314502 -78967987 - L1M4c LINE L1 -3332 3312 2529 769 229 70 55 chr12 65315128 65315528 -78966961 - L1M4c LINE L1 -4314 2511 1967 1717 138 37 40 chr12 65315528 65315649 -78966840 + AluJo SINE Alu 13 133 -179 1923 149 7 3 chr12 65315649 65315938 -78966551 + AluJb SINE Alu 7 296 -16 1717 138 37 40 chr12 65315938 65316112 -78966377 + AluJo SINE Alu 133 307 -5 1252 183 13 109 chr12 65316139 65316281 -78966208 - L1M4c LINE L1 -6228 411 257 1384 175 67 26 chr12 65316281 65316549 -78965940 + AluJo SINE Alu 4 282 -30 1252 183 13 109 chr12 65316549 65316754 -78965735 - L1M4c LINE L1 -6382 257 14 668 215 6 49 chr12 65317823 65317962 -78964527 + MER5B DNA MER1_type 1 134 -44 2326 75 7 3 chr12 65317962 65318255 -78964234 + AluSp SINE Alu 1 294 -19 668 215 6 49 chr12 65318255 65318278 -78964211 + MER5B DNA MER1_type 134 156 -22 654 176 88 24 chr12 65318327 65318497 -78963992 + MER53 DNA DNA 8 188 -1 1102 201 50 40 chr12 65318733 65319046 -78963443 - MLT1B LTR MaLR -19 371 1 2064 116 0 44 chr12 65319233 65319553 -78962936 - AluSx SINE Alu -4 308 3 715 73 0 18 chr12 65323424 65323533 -78958956 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 2251 102 3 19 chr12 65324338 65324651 -78957838 + AluSx SINE Alu 1 308 -4 712 210 0 29 chr12 65324684 65324822 -78957667 + AluJo SINE Alu 3 136 -176 231 194 108 21 chr12 65325033 65325126 -78957363 + L1ME4a LINE L1 5995 6095 -26 2297 120 37 35 chr12 65325183 65325557 -78956932 - THE1C LTR MaLR 0 375 1 275 192 27 55 chr12 65325771 65325844 -78956645 + L2 LINE L2 3243 3313 0 662 227 40 131 chr12 65325999 65326105 -78956384 + MLT1E LTR MaLR 1 115 -452 2167 90 38 0 chr12 65326105 65326394 -78956095 - AluSp SINE Alu -13 300 1 662 227 40 131 chr12 65326394 65326647 -78955842 + MLT1E LTR MaLR 115 345 -222 264 325 9 35 chr12 65327047 65327161 -78955328 - MIR3 SINE MIR -54 154 44 533 169 0 0 chr12 65327161 65327238 -78955251 + FLAM_A SINE Alu 1 77 -55 2520 63 0 0 chr12 65327870 65328172 -78954317 + AluY SINE Alu 1 302 -9 1605 175 43 7 chr12 65328421 65328701 -78953788 - AluJo SINE Alu -18 294 5 332 280 142 52 chr12 65328709 65328998 -78953491 - L1MC4a LINE L1 -1606 6202 5888 1832 84 108 0 chr12 65329012 65329261 -78953228 - AluSx SINE Alu -31 281 6 214 313 16 0 chr12 65329966 65330030 -78952459 - MIR SINE MIR -116 146 82 209 306 56 0 chr12 65330303 65330375 -78952114 - L2 LINE L2 -49 3223 3148 2163 109 10 10 chr12 65333453 65333756 -78948733 - AluSx SINE Alu -9 303 1 21 0 0 0 chr12 65334927 65334948 -78947541 + AT_rich Low_complexity Low_complexity 1 21 0 827 138 0 24 chr12 65336087 65336210 -78946279 + FLAM_C SINE Alu 6 125 -18 22 35 0 0 chr12 65337482 65337511 -78944978 + AT_rich Low_complexity Low_complexity 1 29 0 420 290 148 0 chr12 65337828 65337990 -78944499 - MIR SINE MIR -5 257 72 1704 166 42 7 chr12 65338269 65338553 -78943936 - AluJb SINE Alu -18 294 1 1645 181 41 0 chr12 65338587 65338880 -78943609 - AluJo SINE Alu -7 305 1 2530 52 0 10 chr12 65338918 65339226 -78943263 + AluY SINE Alu 1 305 -6 2172 198 35 31 chr12 65339245 65339440 -78943049 + MSTB LTR MaLR 1 194 -232 2551 64 0 6 chr12 65339440 65339753 -78942736 + AluY SINE Alu 1 311 0 2172 198 35 31 chr12 65339753 65339981 -78942508 + MSTB LTR MaLR 194 426 0 281 331 16 63 chr12 65340013 65340140 -78942349 - MIR SINE MIR -71 137 17 1016 188 39 0 chr12 65340146 65340327 -78942162 - MER5A DNA MER1_type -1 188 1 286 122 0 0 chr12 65340788 65340829 -78941660 - MLT1G LTR MaLR -9 581 541 371 231 119 3 chr12 65340875 65341018 -78941471 - MLT1H1 LTR MaLR -428 167 1 278 353 45 49 chr12 65341200 65341424 -78941065 - L2 LINE L2 -1 3271 3049 2054 162 55 62 chr12 65342878 65343347 -78939142 - MLT1D LTR MaLR -39 466 1 449 313 159 14 chr12 65343776 65343984 -78938505 - MIR SINE MIR -3 259 22 196 224 69 69 chr12 65345660 65345718 -78936771 - L2 LINE L2 -36 3236 3179 842 283 71 58 chr12 65345945 65346130 -78936359 - MLT1H1 LTR MaLR -1 554 373 833 141 0 59 chr12 65346130 65346265 -78936224 + FLAM_C SINE Alu 2 128 -5 842 283 71 58 chr12 65346265 65346626 -78935863 - MLT1H1 LTR MaLR -182 373 1 1154 231 82 44 chr12 65347007 65347448 -78935041 - MLT1G LTR MaLR -106 461 1 351 96 0 0 chr12 65347656 65347708 -78934781 + (GA)n Simple_repeat Simple_repeat 1 52 0 612 146 71 188 chr12 65347747 65347987 -78934502 + MER58C DNA MER1_type 4 215 0 919 161 0 0 chr12 65348220 65348363 -78934126 + FLAM_C SINE Alu 1 143 0 211 282 73 81 chr12 65348380 65348614 -78933875 + L2 LINE L2 2720 2951 -363 2039 119 0 24 chr12 65348867 65349162 -78933327 + AluSx SINE Alu 1 288 -24 213 39 0 0 chr12 65349173 65349199 -78933290 + (CA)n Simple_repeat Simple_repeat 2 27 0 1915 166 0 10 chr12 65349628 65349918 -78932571 + AluJb SINE Alu 1 287 -25 807 144 0 0 chr12 65350662 65350780 -78931709 + FLAM_C SINE Alu 1 118 -15 2191 105 0 3 chr12 65350871 65351157 -78931332 - AluSx SINE Alu -27 285 1 620 211 8 8 chr12 65351163 65351296 -78931193 - MER5B DNA MER1_type -45 133 1 207 355 13 0 chr12 65352294 65352370 -78930119 + MIR SINE MIR 65 141 -67 1118 174 12 114 chr12 65352380 65352570 -78929919 + L1M4 LINE L1 16 159 -6383 1406 175 67 26 chr12 65352570 65352838 -78929651 - AluJo SINE Alu -30 282 4 1118 174 12 114 chr12 65352838 65352980 -78929509 + L1M4 LINE L1 159 314 -6228 1728 150 39 39 chr12 65353007 65353181 -78929308 - AluJo SINE Alu -5 307 131 1941 149 7 3 chr12 65353181 65353470 -78929019 - AluJb SINE Alu -16 296 7 1728 150 39 39 chr12 65353470 65353602 -78928887 - AluJo SINE Alu -180 132 1 639 239 48 22 chr12 65353602 65353993 -78928496 + L1M4 LINE L1 1978 2469 -4177 2466 232 37 10 chr12 65354604 65355419 -78927070 + L1M1 LINE L1 3394 4233 -3332 184 246 140 0 chr12 65355419 65355476 -78927013 + MIR SINE MIR 124 188 -74 2603 39 0 0 chr12 65355910 65356221 -78926268 - AluY SINE Alu 0 311 1 638 198 0 0 chr12 65356303 65356424 -78926065 + MER58B DNA MER1_type 218 338 -3 334 213 65 19 chr12 65356437 65356545 -78925944 - LTR37B LTR ERV1 -355 113 1 348 180 20 50 chr12 65356545 65356645 -78925844 - L1MC5 LINE L1 -134 7827 7731 1678 149 115 0 chr12 65356811 65357080 -78925409 + AluJo SINE Alu 1 300 -12 1629 208 3 10 chr12 65357904 65358197 -78924292 - AluJb SINE Alu -21 291 1 351 96 0 0 chr12 65358507 65358559 -78923930 + (GA)n Simple_repeat Simple_repeat 1 52 0 612 146 71 188 chr12 65358598 65358838 -78923651 + MER58C DNA MER1_type 4 215 0 919 161 0 0 chr12 65359071 65359214 -78923275 + FLAM_C SINE Alu 1 143 0 211 282 73 81 chr12 65359231 65359465 -78923024 + L2 LINE L2 2720 2951 -363 2039 119 0 24 chr12 65359718 65360013 -78922476 + AluSx SINE Alu 1 288 -24 213 39 0 0 chr12 65360024 65360050 -78922439 + (CA)n Simple_repeat Simple_repeat 2 27 0 1915 166 0 10 chr12 65360477 65360767 -78921722 + AluJb SINE Alu 1 287 -25 807 144 0 0 chr12 65361512 65361630 -78920859 + FLAM_C SINE Alu 1 118 -15 2214 98 0 3 chr12 65361721 65362007 -78920482 - AluSx SINE Alu -27 285 1 1909 129 11 4 chr12 65362271 65362550 -78919939 + AluJb SINE Alu 1 281 -31 351 0 0 0 chr12 65362552 65362591 -78919898 + (CA)n Simple_repeat Simple_repeat 2 40 0 1190 139 29 45 chr12 65362670 65362914 -78919575 + L1MA7 LINE L1 5815 6054 -237 966 239 100 33 chr12 65363460 65364032 -78918457 - L1MC5 LINE L1 -36 7925 7316 400 241 98 6 chr12 65364229 65364403 -78918086 - L1MC5 LINE L1 -738 7223 7034 2419 88 7 0 chr12 65364691 65364998 -78917491 + AluSq SINE Alu 1 309 -4 195 299 175 0 chr12 65365819 65365916 -78916573 + L2 LINE L2 1925 2038 -1276 606 222 0 8 chr12 65366568 65366685 -78915804 - FLAM_A SINE Alu -21 121 6 829 131 145 0 chr12 65366699 65366844 -78915645 - FRAM SINE Alu -15 161 1 21 0 0 0 chr12 65369649 65369670 -78912819 + GC_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr12 65370740 65370770 -78911719 + GC_rich Low_complexity Low_complexity 1 30 0 552 173 211 0 chr12 65371324 65371480 -78911009 - MER53 DNA DNA 0 189 1 233 352 0 0 chr12 65372959 65373013 -78909476 + L2 LINE L2 3127 3180 -92 708 232 40 7 chr12 65373381 65373532 -78908957 - MIR SINE MIR -101 161 6 30 0 0 0 chr12 65374325 65374355 -78908134 + AT_rich Low_complexity Low_complexity 1 30 0 276 324 15 0 chr12 65374753 65374821 -78907668 - L2 LINE L2 -1 3271 3203 524 163 92 0 chr12 65375057 65375155 -78907334 + U6 snRNA snRNA 1 107 0 27 0 0 0 chr12 65375155 65375182 -78907307 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr12 65375302 65375332 -78907157 + AT_rich Low_complexity Low_complexity 1 30 0 1724 198 3 10 chr12 65376259 65376573 -78905916 - AluJo SINE Alu 0 312 1 2160 129 0 3 chr12 65376827 65377137 -78905352 + AluSx SINE Alu 1 309 -3 26 0 0 0 chr12 65377497 65377523 -78904966 + AT_rich Low_complexity Low_complexity 1 26 0 355 331 32 26 chr12 65378632 65378786 -78903703 + MIR SINE MIR 3 157 -105 235 347 10 20 chr12 65378938 65379036 -78903453 - MER5B DNA MER1_type -69 109 13 514 298 48 11 chr12 65379037 65379225 -78903264 + MIR SINE MIR 8 202 -60 2056 137 23 0 chr12 65379337 65379636 -78902853 - AluSx SINE Alu -6 306 1 729 102 0 0 chr12 65380751 65380849 -78901640 - AluSx SINE Alu -15 294 197 1164 96 0 0 chr12 65380854 65381000 -78901489 - AluSx SINE Alu -166 146 1 2332 65 14 14 chr12 65381168 65381462 -78901027 + AluY SINE Alu 1 294 -17 33 0 0 0 chr12 65381953 65381986 -78900503 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr12 65383603 65383630 -78898859 + AT_rich Low_complexity Low_complexity 1 27 0 2042 148 6 6 chr12 65383744 65384055 -78898434 + AluSx SINE Alu 1 311 -1 552 167 53 18 chr12 65384253 65384367 -78898122 + FLAM_A SINE Alu 20 137 -5 596 152 72 148 chr12 65384604 65384841 -78897648 - MER46A DNA MER2_type 0 236 18 276 254 0 0 chr12 65384898 65384953 -78897536 - MIR SINE MIR -160 102 48 317 70 23 0 chr12 65386147 65386190 -78896299 + (TA)n Simple_repeat Simple_repeat 1 44 0 1225 231 30 7 chr12 65386190 65386488 -78896001 - AluSg SINE Alu -5 305 1 1293 194 37 4 chr12 65386843 65387085 -78895404 + AluJo SINE Alu 1 250 -62 1506 188 42 7 chr12 65387395 65387683 -78894806 - AluJo SINE Alu -14 298 1 192 40 0 0 chr12 65388089 65388114 -78894375 + (TG)n Simple_repeat Simple_repeat 2 26 0 273 294 159 66 chr12 65388792 65389164 -78893325 - L2 LINE L2 -714 2600 2183 1280 218 121 0 chr12 65389164 65389471 -78893018 + MER2 DNA MER2_type 1 344 0 273 294 159 66 chr12 65389471 65389520 -78892969 - L2 LINE L2 -1131 2183 2140 1693 174 3 26 chr12 65390235 65390539 -78891950 + AluJo SINE Alu 1 297 -15 519 257 0 37 chr12 65391015 65391139 -78891350 + L2 LINE L2 2501 2619 -695 501 213 37 117 chr12 65391139 65391203 -78891286 - MER5B DNA MER1_type -2 176 108 2348 58 34 0 chr12 65391203 65391494 -78890995 + AluY SINE Alu 1 301 -10 501 213 37 117 chr12 65391494 65391617 -78890872 - MER5B DNA MER1_type -70 108 4 569 273 64 76 chr12 65391725 65392147 -78890342 - LTR67 LTR ERVL 0 557 141 1295 158 68 26 chr12 65392625 65392708 -78889781 - MER33 DNA MER1_type -2261 324 246 1746 204 0 6 chr12 65392708 65393022 -78889467 + AluJo SINE Alu 1 312 0 1295 158 68 26 chr12 65393022 65393249 -78889240 - MER33 DNA MER1_type -2339 246 1 1876 101 14 71 chr12 65393379 65393675 -78888814 + AluSq SINE Alu 3 281 -32 26 50 0 0 chr12 65394193 65394233 -78888256 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr12 65394874 65394894 -78887595 + (T)n Simple_repeat Simple_repeat 1 20 0 491 254 142 12 chr12 65394923 65395092 -78887397 - MIR SINE MIR -71 191 1 2075 132 7 0 chr12 65395650 65395960 -78886529 - AluSq SINE Alu -1 312 1 180 283 0 19 chr12 65396515 65396568 -78885921 + L3 LINE CR1 537 588 -989 30 45 0 0 chr12 65397612 65397656 -78884833 + AT_rich Low_complexity Low_complexity 1 44 0 225 349 47 0 chr12 65397916 65398022 -78884467 + L2 LINE L2 3162 3272 0 183 186 47 0 chr12 65398225 65398268 -78884221 - L2 LINE L2 -181 3091 3047 275 307 53 33 chr12 65398479 65398629 -78883860 - L2 LINE L2 -569 2745 2593 1144 73 0 0 chr12 65398821 65398971 -78883518 + L1PA7 LINE L1 6005 6154 0 21 0 0 0 chr12 65398971 65398992 -78883497 + AT_rich Low_complexity Low_complexity 1 21 0 387 308 81 6 chr12 65399064 65399236 -78883253 - L1ME LINE L1 -458 5663 5479 21 36 0 0 chr12 65399306 65399334 -78883155 + AT_rich Low_complexity Low_complexity 1 28 0 207 69 0 0 chr12 65400282 65400311 -78882178 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 26 0 0 0 chr12 65400775 65400801 -78881688 + AT_rich Low_complexity Low_complexity 1 26 0 1173 229 63 61 chr12 65400879 65401306 -78881183 + HsTC2a DNA Tc2 1 428 -316 444 168 67 25 chr12 65401298 65401417 -78881072 + HsTC2a DNA Tc2 611 734 -8 * 182 348 11 56 chr12 65401564 65401653 -78880836 + MIR SINE MIR 2 86 -176 189 74 0 0 chr12 65402343 65402370 -78880119 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 56 0 0 chr12 65403176 65403212 -78879277 + AT_rich Low_complexity Low_complexity 1 36 0 2093 68 0 0 chr12 65404779 65405028 -78877461 + AluY SINE Alu 59 307 -4 24 0 0 0 chr12 65405504 65405528 -78876961 + AT_rich Low_complexity Low_complexity 1 24 0 337 191 48 0 chr12 65405894 65405978 -78876511 + L1ME1 LINE L1 5022 5109 -1037 2917 238 32 46 chr12 65405993 65406079 -78876410 + L1ME1 LINE L1 5204 5290 -876 4765 11 7 13 chr12 65406079 65406635 -78875854 + L1PA3 LINE L1 5602 6154 -1 2917 238 32 46 chr12 65406635 65406920 -78875569 + L1ME1 LINE L1 5290 5577 -589 2062 146 0 3 chr12 65406920 65407228 -78875261 - AluSx SINE Alu -5 307 1 2917 238 32 46 chr12 65407228 65407819 -78874670 + L1ME1 LINE L1 5577 6161 -5 268 299 149 5 chr12 65408608 65408829 -78873660 - L1ME LINE L1 -237 5884 5632 38 0 0 20 chr12 65408877 65408904 -78873585 + AT_rich Low_complexity Low_complexity 1 28 -20 2071 119 7 3 chr12 65408904 65409197 -78873292 + AluSx SINE Alu 1 294 -18 38 0 0 20 chr12 65409197 65409218 -78873271 + AT_rich Low_complexity Low_complexity 28 48 0 26 82 0 0 chr12 65409992 65410053 -78872436 + AT_rich Low_complexity Low_complexity 1 61 0 1616 166 0 56 chr12 65411126 65411252 -78871237 + AluJb SINE Alu 11 143 -169 2267 109 0 0 chr12 65411252 65411554 -78870935 + AluSg SINE Alu 1 302 -8 1616 166 0 56 chr12 65411554 65411747 -78870742 + AluJb SINE Alu 143 312 0 229 333 78 29 chr12 65412018 65412120 -78870369 - MIR SINE MIR -82 126 20 532 281 87 28 chr12 65412391 65412620 -78869869 - MIR SINE MIR -1 261 15 * 1357 272 68 57 chr12 65412606 65413452 -78869037 + L2 LINE L2 2456 3313 0 2440 76 0 10 chr12 65413543 65413857 -78868632 - AluY SINE Alu 0 311 1 62 68 0 0 chr12 65414026 65414144 -78868345 + AT_rich Low_complexity Low_complexity 1 118 0 211 325 36 0 chr12 65414338 65414421 -78868068 - MIR SINE MIR -73 189 104 371 118 176 0 chr12 65414533 65414618 -78867871 - L1MB3 LINE L1 -9 6174 6075 575 236 142 30 chr12 65414683 65414950 -78867539 - MARNA DNA Mariner -77 509 213 392 302 63 8 chr12 65414954 65415080 -78867409 - L2 LINE L2 -2 3311 3179 410 67 0 13 chr12 65416659 65416734 -78865755 + AluSp/q SINE Alu 240 313 0 42 0 0 0 chr12 65416734 65416776 -78865713 + AT_rich Low_complexity Low_complexity 1 42 0 279 179 192 13 chr12 65417343 65417494 -78864995 + AluSp SINE Alu 1 178 -125 2245 102 0 0 chr12 65418202 65418540 -78863949 + AluSx SINE Alu 1 338 0 335 301 12 0 chr12 65418566 65418642 -78863847 + MLT1J LTR MaLR 103 179 -332 335 94 19 0 chr12 65418642 65418695 -78863794 + THE1B LTR MaLR 1 54 -374 590 139 0 0 chr12 65418697 65418783 -78863706 + AluSg/x SINE Alu 212 297 -15 2204 110 9 21 chr12 65418783 65419109 -78863380 + THE1B LTR MaLR 43 364 0 1397 181 80 177 chr12 65419117 65419808 -78862681 + LTR8A LTR ERV1 1 624 -103 258 75 25 0 chr12 65419823 65419863 -78862626 + L1M3 LINE L1 5576 5616 -555 2229 123 3 0 chr12 65419868 65420168 -78862321 + AluSp SINE Alu 1 301 -12 1055 182 0 0 chr12 65420169 65420361 -78862128 + L1M3 LINE L1 5592 5783 -388 * 15413 189 18 12 chr12 65420359 65421011 -78861478 + L1PA13 LINE L1 1057 1704 -5162 1586 165 79 7 chr12 65421011 65421290 -78861199 + AluSx SINE Alu 1 299 -13 15413 189 18 12 chr12 65421290 65421994 -78860495 + L1PA13 LINE L1 1704 2403 -4463 2179 121 3 0 chr12 65421994 65422284 -78860205 - AluSg SINE Alu -18 292 2 15413 189 18 12 chr12 65422284 65426023 -78856466 + L1PA13 LINE L1 2403 6173 -693 1169 122 6 28 chr12 65426023 65426203 -78856286 + AluSg/x SINE Alu 116 291 -21 4141 94 73 12 chr12 65426203 65426218 -78856271 + L1PA13 LINE L1 6179 6192 -674 2402 73 0 25 chr12 65426218 65426533 -78855956 + AluSg SINE Alu 1 307 -3 4141 94 73 12 chr12 65426533 65427164 -78855325 + L1PA13 LINE L1 6192 6864 -2 301 308 96 0 chr12 65427167 65427313 -78855176 + L1ME4a LINE L1 5960 6119 -2 234 314 47 12 chr12 65428430 65428516 -78853973 + L2 LINE L2 3168 3256 -16 201 256 78 44 chr12 65428636 65428726 -78853763 - L2 LINE L2 -4 3309 3217 * 774 261 54 15 chr12 65428714 65428917 -78853572 - MIR SINE MIR -37 225 15 5286 217 72 61 chr12 65429048 65429323 -78853166 - L1M2 LINE L1 -4805 2044 1773 2168 109 3 0 chr12 65429323 65429607 -78852882 + AluSx SINE Alu 1 285 -27 5286 217 72 61 chr12 65429607 65431344 -78851145 - L1M2 LINE L1 -5076 1773 10 2170 114 0 3 chr12 65432150 65432457 -78850032 + AluSx SINE Alu 1 306 -6 363 44 0 0 chr12 65432457 65432502 -78849987 + (GA)n Simple_repeat Simple_repeat 2 46 0 2075 113 0 11 chr12 65432660 65432971 -78849518 - AluSx SINE Alu 0 308 1 312 202 64 32 chr12 65433395 65433489 -78849000 - MLT1J LTR MaLR -6 505 409 1354 270 50 21 chr12 65433490 65433968 -78848521 + L1MEc LINE L1 39 530 -5866 549 142 40 73 chr12 65433975 65434134 -78848355 - L1M LINE L1 -783 5363 5231 2086 236 94 31 chr12 65434134 65434982 -78847507 + L1MEc LINE L1 533 1434 -4962 852 231 78 4 chr12 65434985 65435240 -78847249 - L1M4 LINE L1 -1939 4207 3934 * 5473 179 9 25 chr12 65435238 65436209 -78846280 - L1 LINE L1 -743 5403 4418 2864 159 3 95 chr12 65436209 65436765 -78845724 + MLT2B3 LTR ERVL 1 498 -56 606 12 24 12 chr12 65436765 65436849 -78845640 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 2864 159 3 95 chr12 65436849 65436902 -78845587 + MLT2B3 LTR ERVL 498 554 0 5473 179 9 25 chr12 65436902 65437071 -78845418 - L1 LINE L1 -1728 4418 4280 2379 76 0 13 chr12 65437071 65437374 -78845115 - AluSc SINE Alu -10 299 1 5473 179 9 25 chr12 65437374 65437413 -78845076 - L1 LINE L1 -1866 4280 4242 3278 172 14 72 chr12 65437412 65438400 -78844089 + L1MA10 LINE L1 5425 6334 0 * 607 148 148 0 chr12 65438564 65438706 -78843783 - L1MB2 LINE L1 -1 6170 6008 960 141 0 136 chr12 65438720 65438933 -78843556 + AluSc SINE Alu 116 299 -10 1008 184 93 43 chr12 65438934 65439212 -78843277 + MLT1C LTR MaLR 159 450 -17 760 281 38 21 chr12 65439236 65439663 -78842826 - L1MDb LINE L1 -4088 2499 2066 1362 255 33 44 chr12 65439675 65439923 -78842566 - LTR40c LTR ERVL -13 452 210 1490 96 5 5 chr12 65439923 65440122 -78842367 + AluSp SINE Alu 109 307 -6 1362 255 33 44 chr12 65440122 65440328 -78842161 - LTR40c LTR ERVL -255 210 3 1091 257 38 16 chr12 65440333 65440699 -78841790 - L1MDb LINE L1 -4384 2022 1649 433 217 7 84 chr12 65440701 65440906 -78841583 - L1MDb LINE L1 -5022 1387 1221 2148 92 14 0 chr12 65440910 65441223 -78841266 + AluSp SINE Alu 1 317 0 2214 205 72 88 chr12 65441225 65441997 -78840492 - L1MD2 LINE L1 -14 6162 5403 1086 247 40 3 chr12 65441983 65442307 -78840182 - L1MD2 LINE L1 -1082 4998 4663 * 246 332 15 49 chr12 65442350 65442555 -78839934 - L1MD2 LINE L1 -5417 653 456 736 230 189 14 chr12 65442585 65442673 -78839816 - L1MCa LINE L1 -3050 3376 3305 2281 71 0 0 chr12 65442673 65442956 -78839533 - AluY SINE Alu -28 283 1 736 230 189 14 chr12 65442956 65443211 -78839278 - L1MCa LINE L1 -3121 3305 2973 965 212 43 73 chr12 65443238 65443619 -78838870 - L1MCa LINE L1 -3936 2671 2257 2130 115 0 7 chr12 65443619 65443930 -78838559 - AluSq SINE Alu 0 309 1 965 212 43 73 chr12 65443930 65443958 -78838531 - L1MCa LINE L1 -4350 2257 2230 * 10861 216 45 13 chr12 65443954 65448214 -78834275 - L1PB1 LINE L1 -3 6217 1857 697 105 0 0 chr12 65448226 65448321 -78834168 + LTR8 LTR ERV1 589 683 -8 271 307 88 9 chr12 65448487 65448601 -78833888 - L1MCa LINE L1 -5947 469 347 292 269 37 0 chr12 65449326 65449434 -78833055 - MLT1L LTR MaLR -340 275 164 195 225 130 43 chr12 65450277 65450415 -78832074 - L2 LINE L2 -237 3035 2886 196 297 279 0 chr12 65450896 65451007 -78831482 - MIR SINE MIR -117 145 4 2048 186 43 50 chr12 65451016 65451499 -78830990 + MLT2B1 LTR ERVL 1 480 -40 190 130 0 43 chr12 65451499 65451545 -78830944 + (TA)n Simple_repeat Simple_repeat 2 45 0 344 175 0 0 chr12 65451569 65451626 -78830863 + MLT2B1 LTR ERVL 464 520 0 1592 163 32 18 chr12 65451863 65452160 -78830329 + AluJb SINE Alu 1 301 0 12428 131 81 28 chr12 65452162 65454460 -78828029 + Tigger1 DNA MER2_type 1 2418 0 1647 162 57 46 chr12 65454486 65454856 -78827633 + MLT1A2 LTR MaLR 1 374 0 445 223 32 0 chr12 65455046 65455140 -78827349 + L2 LINE L2 3217 3313 0 264 273 57 11 chr12 65455281 65455369 -78827120 + MIR3 SINE MIR 88 179 -29 765 201 44 6 chr12 65455372 65455531 -78826958 - MLT1F1 LTR MaLR -13 554 390 23 54 0 0 chr12 65455630 65455667 -78826822 + AT_rich Low_complexity Low_complexity 1 37 0 368 246 119 0 chr12 65458182 65458300 -78824189 + MER97a DNA MER1_type? 47 178 -716 752 125 0 0 chr12 65458637 65458763 -78823726 + FRAM SINE Alu 43 168 0 27 73 0 0 chr12 65458885 65458940 -78823549 + AT_rich Low_complexity Low_complexity 1 55 0 212 146 104 0 chr12 65459107 65459155 -78823334 - MIR SINE MIR -58 204 152 941 228 19 9 chr12 65459176 65459391 -78823098 + MIR SINE MIR 45 261 -1 262 294 130 11 chr12 65459384 65459476 -78823013 - MIR SINE MIR -107 155 53 * 1663 158 17 34 chr12 65459524 65459821 -78822668 - AluJb SINE Alu -18 294 3 389 281 70 18 chr12 65460105 65460219 -78822270 + L2 LINE L2 3193 3312 -1 204 40 0 0 chr12 65460505 65460530 -78821959 + (A)n Simple_repeat Simple_repeat 1 25 0 1149 343 134 33 chr12 65462609 65464026 -78818463 + L2 LINE L2 1484 3052 -220 354 156 0 0 chr12 65464564 65464628 -78817861 + (TA)n Simple_repeat Simple_repeat 1 64 0 590 277 115 43 chr12 65465583 65465818 -78816671 - MIR SINE MIR 0 262 11 765 239 69 36 chr12 65465923 65466199 -78816290 - MER2 DNA MER2_type -1 344 60 231 114 0 0 chr12 65466660 65466695 -78815794 + (CCAA)n Simple_repeat Simple_repeat 4 38 0 399 274 112 24 chr12 65467899 65468195 -78814294 + L1MD1 LINE L1 2841 3162 -2984 1596 164 10 10 chr12 65468207 65468499 -78813990 + AluJb SINE Alu 1 292 -20 27 0 0 0 chr12 65468506 65468533 -78813956 + AT_rich Low_complexity Low_complexity 1 27 0 1944 133 0 0 chr12 65468655 65468934 -78813555 - AluSc SINE Alu -30 279 1 473 309 100 8 chr12 65469001 65469450 -78813039 + L1MD1 LINE L1 3350 3848 -2298 339 336 143 13 chr12 65469458 65469736 -78812753 + L1MD1 LINE L1 5545 5861 -381 319 167 0 33 chr12 65470297 65470357 -78812132 - L1MC4 LINE L1 -1369 6673 6616 3405 98 38 84 chr12 65470478 65471161 -78811328 + L1MA1 LINE L1 5667 6319 0 2888 172 22 111 chr12 65471210 65471642 -78810847 - Looper DNA T2_type 0 1558 1236 2168 86 3 20 chr12 65471642 65471944 -78810545 - AluSc SINE Alu -12 297 1 2888 172 22 111 chr12 65471944 65472355 -78810134 - Looper DNA T2_type -322 1236 790 265 122 0 24 chr12 65472440 65472481 -78810008 - 5S rRNA rRNA -80 41 2 1647 170 121 55 chr12 65472481 65472630 -78809859 - Looper DNA T2_type -1075 483 345 2092 125 26 0 chr12 65472630 65472933 -78809556 + AluSx SINE Alu 1 311 -1 1647 170 121 55 chr12 65472933 65473236 -78809253 - Looper DNA T2_type -1213 345 1 29 0 0 0 chr12 65475395 65475424 -78807065 + AT_rich Low_complexity Low_complexity 1 29 0 518 349 188 27 chr12 65477145 65477364 -78805125 + L2 LINE L2 592 774 -2540 1679 167 17 13 chr12 65477364 65477664 -78804825 - AluJb SINE Alu -11 301 1 518 349 188 27 chr12 65477664 65478079 -78804410 + L2 LINE L2 774 1121 -2193 1886 146 3 16 chr12 65478079 65478394 -78804095 + AluJb SINE Alu 1 311 -1 518 349 188 27 chr12 65478394 65478984 -78803505 + L2 LINE L2 1121 2015 -1299 485 289 23 0 chr12 65479111 65479239 -78803250 - MER94 DNA DNA -3 131 1 454 318 125 65 chr12 65479248 65479848 -78802641 + L2 LINE L2 2194 2829 -485 23 0 0 0 chr12 65481895 65481918 -78800571 + AT_rich Low_complexity Low_complexity 1 23 0 205 182 0 0 chr12 65482147 65482191 -78800298 + A-rich Low_complexity Low_complexity 1 44 0 3285 213 24 3 chr12 65482733 65483367 -78799122 - MER82 DNA MER2_type 0 653 7 243 0 0 0 chr12 65484626 65484653 -78797836 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 725 155 62 43 chr12 65484672 65484833 -78797656 - MER106A DNA MER1_type -71 165 2 21 36 0 0 chr12 65485210 65485238 -78797251 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 65485684 65485713 -78796776 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr12 65486270 65486304 -78796185 + AT_rich Low_complexity Low_complexity 1 34 0 306 367 87 56 chr12 65487035 65487598 -78794891 + L2 LINE L2 2681 3267 -5 202 116 93 0 chr12 65487656 65487699 -78794790 + L2 LINE L2 3262 3308 -5 2182 111 0 0 chr12 65488287 65488585 -78793904 - AluSx SINE Alu -14 298 1 2267 98 0 23 chr12 65488767 65489072 -78793417 - AluSx SINE Alu -14 298 1 1387 103 0 0 chr12 65489255 65489459 -78793030 + L1MA3 LINE L1 6102 6305 0 26 64 0 0 chr12 65489462 65489509 -78792980 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr12 65490283 65490306 -78792183 + AT_rich Low_complexity Low_complexity 1 23 0 284 230 172 0 chr12 65490987 65491074 -78791415 + L2 LINE L2 3168 3269 -3 403 309 44 44 chr12 65494509 65494690 -78787799 - MIR SINE MIR -76 186 6 725 228 211 0 chr12 65494837 65495083 -78787406 - MER5C DNA MER1_type -26 298 1 227 311 75 47 chr12 65495083 65495172 -78787317 - L2 LINE L2 -24 3248 3157 186 331 159 36 chr12 65495544 65495795 -78786694 - L2 LINE L2 -820 2494 2213 184 271 17 17 chr12 65495828 65495887 -78786602 - L2 LINE L2 -1392 1922 1864 661 203 123 0 chr12 65495953 65496091 -78786398 - MIR SINE MIR -101 161 7 1612 113 162 4 chr12 65496283 65496549 -78785940 + AluSg1 SINE Alu 1 308 -1 432 278 113 0 chr12 65497377 65497528 -78784961 + L2 LINE L2 3138 3305 -8 23329 83 15 6 chr12 65497551 65499023 -78783466 + L1PA7 LINE L1 1992 3450 -2704 1878 62 21 4 chr12 65499023 65499301 -78783188 + AluY SINE Alu 37 318 0 23329 83 15 6 chr12 65499301 65501957 -78780532 + L1PA7 LINE L1 3450 6154 0 323 330 201 11 chr12 65502036 65502215 -78780274 + L2 LINE L2 1068 1280 -2034 784 285 63 60 chr12 65502345 65502696 -78779793 + L2 LINE L2 2124 2475 -839 994 316 94 40 chr12 65502709 65503400 -78779089 - L2 LINE L2 -24 3289 2584 546 347 146 29 chr12 65503439 65503857 -78778632 + L2 LINE L2 2804 3270 -2 595 236 142 30 chr12 65503861 65504128 -78778361 + MARNA DNA Mariner 213 509 -77 378 118 176 0 chr12 65504193 65504278 -78778211 + L1MB3 LINE L1 6075 6174 -9 212 325 36 0 chr12 65504390 65504473 -78778016 + MIR SINE MIR 104 189 -73 273 130 156 52 chr12 65505369 65505446 -78777043 + Charlie2 DNA MER1_type 109 193 -2589 587 228 6 32 chr12 65505520 65505678 -78776811 + Charlie2 DNA MER1_type 1899 2052 -810 552 322 57 26 chr12 65507003 65507233 -78775256 - MIR SINE MIR -10 252 16 1205 134 18 51 chr12 65507537 65507754 -78774735 + MER2 DNA MER2_type 1 210 -135 2198 117 0 3 chr12 65507781 65508080 -78774409 - AluSq SINE Alu -13 300 3 21 0 0 0 chr12 65509403 65509424 -78773065 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr12 65510673 65510699 -78771790 + (A)n Simple_repeat Simple_repeat 1 26 0 300 53 0 0 chr12 65512356 65512394 -78770095 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr12 65513751 65513772 -78768717 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr12 65514372 65514415 -78768074 + AT_rich Low_complexity Low_complexity 1 43 0 1538 173 17 17 chr12 65515590 65515879 -78766610 + AluJb SINE Alu 1 289 -23 26 88 0 0 chr12 65517295 65517363 -78765126 + AT_rich Low_complexity Low_complexity 1 68 0 28 48 0 0 chr12 65518245 65518287 -78764202 + AT_rich Low_complexity Low_complexity 1 42 0 1594 162 14 35 chr12 65518289 65518579 -78763910 - AluJb SINE Alu -12 300 17 21 0 0 0 chr12 65518875 65518896 -78763593 + AT_rich Low_complexity Low_complexity 1 21 0 282 255 20 29 chr12 65519119 65519221 -78763268 + (TA)n Simple_repeat Simple_repeat 1 101 0 347 366 177 15 chr12 65519341 65519943 -78762546 - L2 LINE L2 -5 3267 2566 1912 168 98 64 chr12 65519973 65520443 -78762046 + Charlie1a DNA MER1_type 2 487 -968 2083 130 19 46 chr12 65520496 65520866 -78761623 + THE1B LTR MaLR 1 360 -4 10782 96 15 33 chr12 65520870 65522479 -78760010 + THE1B-int LTR MaLR 1 1580 0 1110 123 34 11 chr12 65522479 65522658 -78759831 + THE1B LTR MaLR 1 183 -181 6883 110 16 18 chr12 65522668 65529054 -78753435 + L1PA8 LINE L1 10 6484 -3 180 0 0 0 chr12 65529059 65529079 -78753410 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1020 134 111 0 chr12 65529079 65529250 -78753239 + THE1B LTR MaLR 175 364 0 2952 170 163 14 chr12 65529258 65530033 -78752456 + Charlie1a DNA MER1_type 541 1430 -25 363 252 84 30 chr12 65530429 65530560 -78751929 + MER91C DNA MER1_type 2 139 -1 288 247 14 27 chr12 65531974 65532047 -78750442 - L2 LINE L2 0 3272 3201 580 131 0 0 chr12 65532320 65532404 -78750085 + U6 snRNA snRNA 1 84 -23 336 237 8 59 chr12 65532445 65532563 -78749926 - L1MC5 LINE L1 -156 7805 7694 1515 144 26 109 chr12 65532926 65533238 -78749251 + AluJb SINE Alu 1 286 -26 2104 122 3 0 chr12 65534333 65534629 -78747860 - AluSx SINE Alu -9 303 7 539 248 124 0 chr12 65535123 65535260 -78747229 + MER5A DNA MER1_type 8 161 -28 1775 182 0 16 chr12 65535567 65535880 -78746609 - AluJo SINE Alu -4 308 1 2140 118 14 3 chr12 65535916 65536212 -78746277 - AluSx SINE Alu -13 299 1 22 0 0 0 chr12 65536283 65536305 -78746184 + AT_rich Low_complexity Low_complexity 1 22 0 494 287 77 53 chr12 65536612 65537127 -78745362 - L1ME LINE L1 -534 5628 5127 180 0 0 0 chr12 65537127 65537147 -78745342 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1696 125 90 0 chr12 65537149 65537405 -78745084 - AluSg SINE Alu -31 279 1 494 287 77 53 chr12 65537405 65537868 -78744621 - L1ME LINE L1 -1035 5127 4613 777 249 33 6 chr12 65538058 65538239 -78744250 + MER58A DNA MER1_type 1 186 -38 312 268 106 7 chr12 65538260 65538402 -78744087 - L1ME LINE L1 -1808 4338 4183 1929 147 7 3 chr12 65539360 65539666 -78742823 - AluSg SINE Alu -1 309 3 898 227 107 23 chr12 65539785 65540093 -78742396 + MER46C DNA MER2_type 4 337 -1 21 71 0 0 chr12 65542356 65542398 -78740091 + AT_rich Low_complexity Low_complexity 1 42 0 311 309 32 11 chr12 65542698 65542792 -78739697 + MIR SINE MIR 96 191 -71 257 316 0 0 chr12 65543047 65543104 -78739385 + L2 LINE L2 3196 3252 -20 222 246 16 0 chr12 65543415 65543476 -78739013 - L2 LINE L2 -213 3059 2998 227 381 0 0 chr12 65543588 65543672 -78738817 - L2 LINE L2 -312 2960 2877 2070 107 0 36 chr12 65544083 65544391 -78738098 + AluSc SINE Alu 1 297 -12 485 289 122 13 chr12 65544418 65544574 -78737915 + MER58A DNA MER1_type 1 173 -51 238 150 50 0 chr12 65544622 65544662 -78737827 + MER58A DNA MER1_type 180 221 -3 24 0 0 0 chr12 65545466 65545490 -78736999 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr12 65545742 65545776 -78736713 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr12 65545973 65546004 -78736485 + AT_rich Low_complexity Low_complexity 1 31 0 2005 121 148 19 chr12 65546015 65546394 -78736095 - MSTA LTR MaLR 0 428 1 541 200 42 0 chr12 65546439 65546559 -78735930 - L1ME3A LINE L1 -7 6163 6039 276 235 59 37 chr12 65546700 65546836 -78735653 - L1ME4a LINE L1 -101 6020 5882 2106 310 132 11 chr12 65546842 65547139 -78735350 - L2 LINE L2 -337 2977 2718 2071 133 125 10 chr12 65547139 65547523 -78734966 + MSTA LTR MaLR 1 428 0 2106 310 132 11 chr12 65547523 65548268 -78734221 - L2 LINE L2 -596 2718 1808 422 290 41 7 chr12 65548268 65548413 -78734076 - L2 LINE L2 -2440 874 725 21 36 0 0 chr12 65548503 65548531 -78733958 + AT_rich Low_complexity Low_complexity 1 28 0 268 325 208 33 chr12 65549041 65549253 -78733236 + MIR SINE MIR 4 252 -10 2104 118 7 3 chr12 65550217 65550514 -78731975 - AluSx SINE Alu -14 298 1 26 64 0 0 chr12 65550983 65551030 -78731459 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr12 65551083 65551107 -78731382 + AT_rich Low_complexity Low_complexity 1 24 0 181 200 0 0 chr12 65554341 65554376 -78728113 - L2 LINE L2 -1 3312 3278 763 195 117 32 chr12 65554493 65554775 -78727714 - L1MC5 LINE L1 -190 7771 7466 226 211 10 125 chr12 65554791 65554895 -78727594 - L1MC5 LINE L1 -679 7282 7191 624 229 0 130 chr12 65554938 65555161 -78727328 + MER58A DNA MER1_type 27 220 -4 257 267 30 30 chr12 65555205 65555306 -78727183 - L1MEc LINE L1 -1639 4576 4476 4945 139 27 2 chr12 65555341 65556246 -78726243 + L1MA4A LINE L1 5197 6120 -183 421 206 0 0 chr12 65556252 65556344 -78726145 + L1MA4A LINE L1 6189 6280 -23 443 338 44 4 chr12 65556354 65556582 -78725907 - L1MEc LINE L1 -1793 4422 4186 2440 263 121 22 chr12 65556642 65557893 -78724596 - L1MEc LINE L1 -2167 4048 2675 705 278 46 80 chr12 65557912 65558214 -78724275 - MLT1F LTR MaLR -250 292 1 270 195 26 76 chr12 65558214 65558342 -78724147 - MLT1F-int LTR MaLR 0 1734 1246 1932 136 26 18 chr12 65558382 65558721 -78723768 - Tigger7 DNA MER2_type -26 2561 2220 979 150 85 14 chr12 65558717 65558965 -78723524 - Tigger7 DNA MER2_type -2189 298 1 * 282 307 11 101 chr12 65558970 65559149 -78723340 - MLT1F-int LTR MaLR -186 1185 1023 365 292 47 35 chr12 65559319 65559490 -78722999 - MLT1F-int LTR MaLR -500 871 699 694 293 89 23 chr12 65559775 65560230 -78722259 - MLT1F-int LTR MaLR -765 606 6 2073 229 24 58 chr12 65560236 65560783 -78721706 - MLT1F LTR MaLR -1 541 14 722 287 101 40 chr12 65560927 65561804 -78720685 - L1MEc LINE L1 -4484 1731 832 193 195 97 124 chr12 65563348 65563461 -78719028 + MIR SINE MIR 153 262 0 1110 119 197 5 chr12 65563862 65564055 -78718434 + MER30 DNA MER1_type 1 230 0 2335 244 79 11 chr12 65564866 65566138 -78716351 - L1ME2 LINE L1 -194 6039 4675 * 3101 195 44 35 chr12 65566132 65567107 -78715382 + L1MB8 LINE L1 4915 5896 -282 1891 127 48 3 chr12 65567107 65567399 -78715090 + AluSx SINE Alu 1 305 -7 3101 195 44 35 chr12 65567399 65567536 -78714953 + L1MB8 LINE L1 5896 6030 -148 264 182 0 61 chr12 65567525 65567591 -78714898 - L1ME2 LINE L1 -3479 2736 2675 * 2277 209 82 42 chr12 65567591 65567661 -78714828 - L1M3c LINE L1 -4516 1625 1559 1636 164 3 52 chr12 65567661 65567842 -78714647 - AluJb SINE Alu -4 308 148 2186 100 3 3 chr12 65567842 65568133 -78714356 - AluSc SINE Alu -18 291 1 1636 164 3 52 chr12 65568133 65568275 -78714214 - AluJb SINE Alu -164 148 1 2277 209 82 42 chr12 65568275 65568898 -78713591 - L1M3c LINE L1 -4582 1559 904 255 281 22 34 chr12 65569152 65569241 -78713248 - L1M3c LINE L1 -5543 588 501 * 263 294 59 0 chr12 65569210 65569295 -78713194 - L1M3c LINE L1 -5238 903 814 226 232 73 0 chr12 65569431 65569513 -78712976 - L1M3c LINE L1 -5240 901 814 * 833 315 64 46 chr12 65569506 65569941 -78712548 - L1M3c LINE L1 -5698 443 1 298 281 8 39 chr12 65569944 65570072 -78712417 - L1ME2 LINE L1 -3660 2555 2432 2092 224 84 8 chr12 65570120 65570665 -78711824 - MLT1E2 LTR MaLR -2 624 58 619 223 83 6 chr12 65570701 65570923 -78711566 - L1ME2 LINE L1 -3843 2383 2170 * 2285 252 98 24 chr12 65570904 65571653 -78710836 - L1ME2 LINE L1 -5471 925 122 12204 236 55 36 chr12 65572793 65572862 -78709627 + L1PB4 LINE L1 3 69 -6779 2092 110 3 0 chr12 65572862 65573152 -78709337 + AluSx SINE Alu 1 291 -21 12204 236 55 36 chr12 65573152 65576778 -78705711 + L1PB4 LINE L1 69 3624 -3224 369 0 0 0 chr12 65576778 65576819 -78705670 + (CA)n Simple_repeat Simple_repeat 2 42 0 12204 236 55 36 chr12 65576819 65577271 -78705218 + L1PB4 LINE L1 3624 4066 -2782 270 0 0 0 chr12 65577271 65577301 -78705188 + (CAA)n Simple_repeat Simple_repeat 1 30 0 12204 236 55 36 chr12 65577301 65579145 -78703344 + L1PB4 LINE L1 4066 6057 -791 4965 148 47 23 chr12 65579178 65579564 -78702925 - L1PA16 LINE L1 -9 6157 5782 2399 71 3 0 chr12 65579564 65579861 -78702628 - AluSp SINE Alu -15 298 1 4965 148 47 23 chr12 65579861 65580423 -78702066 - L1PA16 LINE L1 -384 5782 5191 3085 138 20 26 chr12 65580422 65580966 -78701523 + L1PB4 LINE L1 6038 6578 -280 * 2175 127 36 84 chr12 65580966 65581404 -78701085 + L1PB4 LINE L1 5732 6150 -6 939 284 100 51 chr12 65582270 65582557 -78699932 - L1M4 LINE L1 -1517 4629 4358 1914 157 3 0 chr12 65582557 65582856 -78699633 - AluSx SINE Alu -12 300 1 939 284 100 51 chr12 65582856 65583296 -78699193 - L1M4 LINE L1 -1788 4358 3866 262 193 140 0 chr12 65583700 65583757 -78698732 + Tigger7 DNA MER2_type 1 65 -274 653 189 32 4 chr12 65583761 65583958 -78698531 - Tigger7 DNA MER2_type -206 344 76 * 1791 147 41 35 chr12 65583956 65584169 -78698320 + Tigger7 DNA MER2_type 2243 2460 -127 1807 162 3 10 chr12 65584169 65584471 -78698018 - AluJb SINE Alu -12 300 1 1791 147 41 35 chr12 65584471 65584598 -78697891 + Tigger7 DNA MER2_type 2460 2585 -2 2006 146 0 7 chr12 65584878 65585186 -78697303 + AluSx SINE Alu 1 306 -6 436 339 108 33 chr12 65585612 65585815 -78696674 + L2 LINE L2 2766 2993 -320 1400 162 98 46 chr12 65585815 65586161 -78696328 + MLT1A1 LTR MaLR 2 365 0 436 339 108 33 chr12 65586161 65586231 -78696258 + L2 LINE L2 2993 3056 -257 23 33 0 0 chr12 65586313 65586343 -78696146 + AT_rich Low_complexity Low_complexity 1 30 0 368 197 197 20 chr12 65586377 65586529 -78695960 - MIR SINE MIR -3 259 81 362 320 63 5 chr12 65586532 65586754 -78695735 + L1M4 LINE L1 4746 4980 -1166 3916 134 76 6 chr12 65586817 65587516 -78694973 + L1MB1 LINE L1 5421 6168 0 1686 182 77 3 chr12 65587526 65587866 -78694623 + MER47A DNA MER2_type 2 366 0 5874 145 36 18 chr12 65587870 65588696 -78693793 + Tigger3b DNA MER2_type 1 852 -2176 1402 120 60 0 chr12 65588696 65588913 -78693576 - MER30 DNA MER1_type 0 230 1 5874 145 36 18 chr12 65588913 65589141 -78693348 + Tigger3b DNA MER2_type 852 1074 -157 336 317 151 52 chr12 65591230 65591706 -78690783 + L2 LINE L2 2221 2743 -571 986 176 28 11 chr12 65591865 65592047 -78690442 - AluJo SINE Alu -19 293 109 602 167 0 0 chr12 65592202 65592304 -78690185 - AluJo SINE Alu -210 102 1 269 329 49 56 chr12 65592305 65592448 -78690041 - MIR SINE MIR -118 144 3 356 362 141 18 chr12 65593101 65593606 -78688883 - L2 LINE L2 -65 3248 2682 21 0 0 0 chr12 65594419 65594440 -78688049 + AT_rich Low_complexity Low_complexity 1 21 0 3010 178 95 12 chr12 65595727 65596755 -78685734 + L1MB8 LINE L1 4678 5840 -338 1444 141 49 111 chr12 65596755 65596805 -78685684 + MER7A DNA MER2_type 3 55 -2983 1496 195 10 17 chr12 65596805 65597102 -78685387 + AluJo SINE Alu 1 295 -17 1444 141 49 111 chr12 65597102 65597420 -78685069 + MER7A DNA MER2_type 55 346 0 3010 178 95 12 chr12 65597420 65597784 -78684705 + L1MB8 LINE L1 5840 6172 -6 232 321 142 9 chr12 65598247 65598353 -78684136 + MIR SINE MIR 49 168 -94 241 260 219 10 chr12 65599622 65599718 -78682771 + MIR SINE MIR 136 251 -11 182 264 136 36 chr12 65599727 65599837 -78682652 + MIR SINE MIR 85 205 -57 1639 199 0 20 chr12 65600674 65600971 -78681518 + AluJo SINE Alu 1 291 -21 521 304 152 10 chr12 65600993 65601197 -78681292 + MIR SINE MIR 2 234 -28 1681 147 18 0 chr12 65602253 65602525 -78679964 + AluSx SINE Alu 11 287 -25 556 211 39 0 chr12 65603737 65603841 -78678648 + FLAM_C SINE Alu 13 120 -23 288 365 91 14 chr12 65605392 65605611 -78676878 - L2 LINE L2 -485 2829 2594 29 0 0 0 chr12 65606300 65606329 -78676160 + AT_rich Low_complexity Low_complexity 1 29 0 32 29 0 0 chr12 65607590 65607624 -78674865 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr12 65608181 65608210 -78674279 + AT_rich Low_complexity Low_complexity 1 29 0 1224 255 67 79 chr12 65608632 65609166 -78673323 + MLT1G LTR MaLR 63 590 0 2055 177 30 3 chr12 65609308 65609669 -78672820 - MSTA LTR MaLR 0 428 58 2186 73 0 0 chr12 65609769 65610154 -78672335 - L1P3 LINE L1 -612 5542 5158 469 344 28 21 chr12 65611285 65611567 -78670922 - HERVL LTR ERVL -797 2759 2476 332 286 32 14 chr12 65611661 65611837 -78670652 - HERVL LTR ERVL -2475 3010 2911 1399 226 107 34 chr12 65612096 65612622 -78669867 + L1MC/D LINE L1 4547 5110 -1036 303 239 76 11 chr12 65613224 65613316 -78669173 - MLT1D LTR MaLR -398 107 10 228 304 13 0 chr12 65613326 65613405 -78669084 + L1MEc LINE L1 1587 1666 -4730 1178 290 103 12 chr12 65613408 65614049 -78668440 - L1ME LINE L1 -5234 836 138 489 82 24 12 chr12 65614058 65614143 -78668346 + (TTCTC)n Simple_repeat Simple_repeat 5 90 0 31 0 0 0 chr12 65614830 65614861 -78667628 + AT_rich Low_complexity Low_complexity 1 31 0 1062 317 65 24 chr12 65614897 65615310 -78667179 + LTR16A LTR ERVL 21 450 0 386 192 27 0 chr12 65615331 65615404 -78667085 - LTR16C LTR ERVL 0 491 417 1123 144 0 0 chr12 65616554 65616727 -78665762 - AluSg/x SINE Alu 0 312 140 2806 10 0 0 chr12 65616844 65617155 -78665334 + AluYb8 SINE Alu 1 311 -7 234 285 78 11 chr12 65617466 65617645 -78664844 + L1MC/D LINE L1 5254 5444 -798 1783 117 0 0 chr12 65617792 65618041 -78664448 + AluY SINE Alu 35 283 -28 1729 172 3 10 chr12 65619112 65619402 -78663087 - MER47B DNA MER2_type 0 418 131 710 322 45 4 chr12 65620136 65620378 -78662111 - MIR SINE MIR -10 252 1 24 0 0 0 chr12 65620907 65620931 -78661558 + AT_rich Low_complexity Low_complexity 1 24 0 257 119 0 0 chr12 65621124 65621166 -78661323 - MER63C DNA MER1_type -369 561 520 544 276 9 67 chr12 65621167 65621392 -78661097 + MER58C DNA MER1_type 1 212 -3 * 613 262 65 36 chr12 65621392 65621656 -78660833 - MER63C DNA MER1_type -406 524 253 869 325 117 20 chr12 65621996 65622405 -78660084 + LTR16C LTR ERVL 43 491 0 228 156 22 0 chr12 65622679 65622724 -78659765 + (CCTTG)n Simple_repeat Simple_repeat 2 47 0 363 292 37 31 chr12 65624008 65624169 -78658320 - L1M4 LINE L1 -953 5193 5032 564 278 45 28 chr12 65624218 65624505 -78657984 - L1M4 LINE L1 -1296 4850 4564 792 256 16 39 chr12 65624507 65624812 -78657677 - L1M4 LINE L1 -3174 2972 2675 1670 35 0 0 chr12 65624814 65625012 -78657477 + L1PA4 LINE L1 5956 6153 -2 230 274 28 19 chr12 65625046 65625152 -78657337 - L1M4 LINE L1 -3702 2444 2338 423 258 139 58 chr12 65625689 65626019 -78656470 - MER113 DNA MER1_type? -45 476 120 183 333 45 0 chr12 65626218 65626284 -78656205 + MIR SINE MIR 86 154 -108 3500 158 18 44 chr12 65627127 65627346 -78655143 - L1PB4 LINE L1 -171 5985 5762 1591 179 29 13 chr12 65627346 65627521 -78654968 - AluJb SINE Alu 0 312 128 661 29 80 0 chr12 65627521 65627658 -78654831 + (TA)n Simple_repeat Simple_repeat 2 149 0 1591 179 29 13 chr12 65627658 65627789 -78654700 - AluJb SINE Alu -184 128 1 3500 158 18 44 chr12 65627789 65628293 -78654196 - L1PB4 LINE L1 -394 5762 5281 309 167 0 0 chr12 65628293 65628347 -78654142 + LTR60 LTR ERV1 1 54 -532 210 333 113 7 chr12 65628546 65628696 -78653793 - MIR SINE MIR -85 177 12 1557 170 0 0 chr12 65629298 65629551 -78652938 + AluSx SINE Alu 1 253 -59 639 277 53 7 chr12 65629652 65629861 -78652628 + MLT-int LTR MaLR 531 741 -910 1914 298 117 5 chr12 65629892 65630630 -78651859 + MSTC-int LTR MaLR 832 1651 0 464 126 32 4 chr12 65630636 65630713 -78651776 + MSTC LTR MaLR 7 94 -334 2086 115 0 0 chr12 65630713 65630999 -78651490 - AluSg SINE Alu -20 290 5 464 126 32 4 chr12 65630999 65631011 -78651478 + MSTC LTR MaLR 94 104 -324 610 167 79 24 chr12 65631044 65631170 -78651319 + MSTC LTR MaLR 296 428 0 4394 160 21 5 chr12 65631341 65632146 -78650343 - L1MA4 LINE L1 -169 7550 6733 219 125 0 0 chr12 65632246 65632286 -78650203 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 4470 206 11 2 chr12 65632300 65633299 -78649190 - L1MA4 LINE L1 -847 6718 5717 243 394 21 38 chr12 65634630 65634866 -78647623 + L2 LINE L2 2828 3059 -213 439 336 65 9 chr12 65634949 65635163 -78647326 + MLT1I LTR MaLR 182 407 -2 413 340 13 13 chr12 65636042 65636192 -78646297 + L2 LINE L2 3150 3299 -14 315 271 7 56 chr12 65636563 65636707 -78645782 - L1MCa LINE L1 -4799 1627 1491 2602 226 20 0 chr12 65636818 65637328 -78645161 - L1MA4 LINE L1 -5706 1859 1340 1047 332 21 16 chr12 65637330 65637710 -78644779 - LTR16C LTR ERVL -26 465 84 200 240 27 0 chr12 65637894 65637969 -78644520 + (TA)n Simple_repeat Simple_repeat 1 77 0 360 279 145 22 chr12 65638821 65639000 -78643489 - L1M4 LINE L1 -921 5225 5025 303 338 61 0 chr12 65639021 65639234 -78643255 - L1M4 LINE L1 -1164 4982 4757 21 0 0 0 chr12 65639381 65639402 -78643087 + AT_rich Low_complexity Low_complexity 1 21 0 310 173 40 12 chr12 65639468 65639641 -78642848 + (TA)n Simple_repeat Simple_repeat 2 179 0 445 267 115 20 chr12 65639643 65639856 -78642633 - L1M4 LINE L1 -2930 3216 2943 2488 54 0 0 chr12 65639856 65640151 -78642338 - AluY SINE Alu -16 295 1 445 267 115 20 chr12 65640151 65640224 -78642265 - L1M4 LINE L1 -3203 2943 2878 211 356 62 27 chr12 65640343 65640568 -78641921 + L2 LINE L2 3081 3313 0 194 290 146 25 chr12 65640577 65640757 -78641732 + MIR SINE MIR 4 209 -53 * 412 315 33 27 chr12 65640753 65640937 -78641552 - MIR SINE MIR 0 262 78 25 0 0 0 chr12 65641168 65641193 -78641296 + AT_rich Low_complexity Low_complexity 1 25 0 2153 148 11 19 chr12 65641215 65641593 -78640896 - THE1C LTR MaLR 0 375 1 26 50 0 0 chr12 65641803 65641843 -78640646 + AT_rich Low_complexity Low_complexity 1 40 0 26 82 0 0 chr12 65643150 65643211 -78639278 + AT_rich Low_complexity Low_complexity 1 61 0 189 188 0 0 chr12 65643517 65643549 -78638940 + MIR SINE MIR 229 260 -2 287 317 109 72 chr12 65643951 65644298 -78638191 - L2 LINE L2 0 3313 2954 242 205 90 26 chr12 65645004 65645082 -78637407 - L2 LINE L2 -7 3265 3183 234 0 0 0 chr12 65647688 65647714 -78634775 + (CAA)n Simple_repeat Simple_repeat 2 27 0 202 195 0 0 chr12 65648199 65648240 -78634249 + MIR SINE MIR 187 227 -35 713 215 35 95 chr12 65648407 65648691 -78633798 + MLT1D LTR MaLR 1 267 -238 300 264 124 135 chr12 65649966 65650520 -78631969 + L1M2 LINE L1 1179 1726 -5840 333 301 15 45 chr12 65651249 65651382 -78631107 + L2 LINE L2 3185 3313 0 313 259 134 0 chr12 65651951 65652063 -78630426 + MIR SINE MIR 136 262 0 356 80 0 0 chr12 65652074 65652124 -78630365 + L1MB8 LINE L1 6129 6178 0 618 224 246 0 chr12 65652446 65652625 -78629864 - MIR SINE MIR -13 249 27 423 183 0 0 chr12 65653452 65653534 -78628955 + (CA)n Simple_repeat Simple_repeat 1 82 0 406 257 28 69 chr12 65653975 65654119 -78628370 + MIR SINE MIR 8 145 -117 237 261 0 31 chr12 65654139 65654204 -78628285 - Charlie8 DNA MER1_type -999 1418 1356 2198 109 3 0 chr12 65654374 65654667 -78627822 - AluSx SINE Alu -18 294 1 2168 116 0 13 chr12 65654781 65655084 -78627405 - AluSx SINE Alu -13 299 1 336 330 140 15 chr12 65656220 65656420 -78626069 + MIR SINE MIR 11 235 -27 1792 220 66 15 chr12 65656792 65657260 -78625229 + MLT1D LTR MaLR 3 494 -11 284 284 35 0 chr12 65657281 65657397 -78625092 + HERVL LTR ERVL 3883 4002 -1652 1541 327 65 25 chr12 65657518 65658410 -78624079 + HERVL LTR ERVL 4190 5117 -647 996 301 91 5 chr12 65658744 65659116 -78623373 + LTR16A LTR ERVL 30 433 -17 231 346 13 13 chr12 65659336 65659495 -78622994 - MLT1-int LTR MaLR -893 478 320 245 235 0 15 chr12 65659504 65659572 -78622917 - MLT1-int LTR MaLR -1289 82 16 242 238 36 131 chr12 65659678 65659846 -78622643 - MLT1H LTR MaLR -195 354 203 450 249 87 5 chr12 65659932 65660117 -78622372 + L1MEd LINE L1 1045 1244 -4875 226 239 57 11 chr12 65660405 65660493 -78621996 + L1M2 LINE L1 2834 2925 -4640 660 116 123 26 chr12 65660543 65660698 -78621791 + MSTB1 LTR MaLR 263 432 0 764 180 27 13 chr12 65661098 65661248 -78621241 - MSTB1 LTR MaLR -177 255 104 1105 127 28 83 chr12 65661255 65661508 -78620981 - LTR23 LTR ERV1 -38 399 161 540 211 53 0 chr12 65661581 65661714 -78620775 - LTR23 LTR ERV1 -289 148 9 1012 165 41 0 chr12 65661715 65661909 -78620580 + L1MB2 LINE L1 5968 6169 -2 711 189 74 8 chr12 65661953 65662138 -78620351 + L1MB1 LINE L1 5987 6181 -4 469 108 0 0 chr12 65662213 65662278 -78620211 + MER61D LTR ERV1 114 178 -323 1705 181 48 9 chr12 65662347 65662684 -78619805 + MER61D LTR ERV1 152 501 0 269 239 75 44 chr12 65663657 65663816 -78618673 + L1M2 LINE L1 3562 3725 -3840 374 287 81 23 chr12 65663893 65664067 -78618422 + L1M2 LINE L1 3759 3942 -3623 651 287 56 65 chr12 65664310 65665110 -78617379 + L1ME4a LINE L1 5315 6121 0 1606 187 10 40 chr12 65665115 65665415 -78617074 + AluJb SINE Alu 1 291 -21 321 206 0 14 chr12 65666633 65666706 -78615783 + FLAM_A SINE Alu 53 124 -9 354 288 32 72 chr12 65666764 65667164 -78615325 - HAL1 LINE L1 -342 2165 1782 195 280 20 0 chr12 65667299 65667349 -78615140 + L2 LINE L2 3251 3301 -12 2153 153 12 3 chr12 65668162 65668496 -78613993 - MER1B DNA MER1_type 0 337 1 244 170 0 19 chr12 65668633 65668686 -78613803 + (TAA)n Simple_repeat Simple_repeat 1 52 0 2267 114 0 0 chr12 65668770 65669068 -78613421 - AluSx SINE Alu -14 298 1 248 158 49 24 chr12 65669092 65669174 -78613315 + (TA)n Simple_repeat Simple_repeat 1 84 0 1880 280 57 2 chr12 65669255 65669766 -78612723 - MLT1G1 LTR MaLR 0 595 57 191 306 157 14 chr12 65669791 65669938 -78612551 - L2 LINE L2 -1042 2272 2105 203 371 67 0 chr12 65670446 65670535 -78611954 - L2 LINE L2 -9 3263 3169 843 210 11 11 chr12 65670620 65670801 -78611688 + MIR SINE MIR 82 262 0 4321 210 33 74 chr12 65670812 65671887 -78610602 + L1M3f LINE L1 14 1132 -5196 662 44 0 22 chr12 65671887 65671978 -78610511 - AluY SINE Alu -221 90 2 4321 210 33 74 chr12 65671978 65672640 -78609849 + L1M3f LINE L1 1132 1820 -4508 2429 81 7 3 chr12 65672640 65672950 -78609539 + AluY SINE Alu 1 311 0 4321 210 33 74 chr12 65672950 65673324 -78609165 + L1M3f LINE L1 1820 2118 -4210 662 198 48 0 chr12 65673324 65673450 -78609039 + FLAM_A SINE Alu 1 132 -1 4321 210 33 74 chr12 65673450 65673603 -78608886 + L1M3f LINE L1 2118 2276 -4052 241 232 89 0 chr12 65675742 65675798 -78606691 - L2 LINE L2 -70 3243 3183 2137 151 0 0 chr12 65675824 65676136 -78606353 + AluSx SINE Alu 1 312 0 273 236 36 55 chr12 65676373 65676392 -78606097 + MIR SINE MIR 14 32 -230 2076 138 7 0 chr12 65676392 65676688 -78605801 + AluSx SINE Alu 1 298 -14 273 236 36 55 chr12 65676688 65676778 -78605711 + MIR SINE MIR 32 121 -141 338 222 288 10 chr12 65676838 65677036 -78605453 - L2 LINE L2 -623 2691 2439 414 152 239 0 chr12 65677220 65677312 -78605177 + FLAM_C SINE Alu 17 130 -13 301 239 0 14 chr12 65677499 65677570 -78604919 - L1MEd LINE L1 -4862 1257 1188 8572 178 32 114 chr12 65677573 65678228 -78604261 + L1M3f LINE L1 2266 2973 -3355 1610 216 7 0 chr12 65678228 65678537 -78603952 + AluJb SINE Alu 1 311 0 8572 178 32 114 chr12 65678537 65679330 -78603159 + L1M3f LINE L1 2973 3829 -2499 243 0 0 0 chr12 65679330 65679357 -78603132 + (CAA)n Simple_repeat Simple_repeat 1 27 0 8572 178 32 114 chr12 65679357 65680807 -78601682 + L1M3f LINE L1 3829 4930 -1398 2250 125 3 3 chr12 65680789 65681142 -78601347 + L1PA16 LINE L1 5393 5745 -421 * 908 158 6 0 chr12 65681144 65681308 -78601181 + L1PA16 LINE L1 5896 6060 -106 31 0 0 0 chr12 65681313 65681344 -78601145 + AT_rich Low_complexity Low_complexity 1 31 0 225 289 0 0 chr12 65681349 65681401 -78601088 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 2496 194 36 0 chr12 65681414 65682017 -78600472 + L1M3f LINE L1 4920 5544 -784 227 303 91 0 chr12 65682043 65682109 -78600380 - MER91A DNA MER1_type -124 72 1 645 372 95 28 chr12 65682295 65682941 -78599548 - L2 LINE L2 -450 2864 2166 2393 63 0 13 chr12 65682941 65683243 -78599246 + AluY SINE Alu 1 298 -13 645 372 95 28 chr12 65683243 65683301 -78599188 - L2 LINE L2 -1148 2166 2113 756 324 21 12 chr12 65683433 65683763 -78598726 - L1MC/D LINE L1 -2136 5672 5340 313 292 103 10 chr12 65683996 65684287 -78598202 - L1MC/D LINE L1 -1072 5074 4757 1188 97 0 18 chr12 65684323 65684488 -78598001 - AluSg/x SINE Alu -11 301 140 27 0 0 0 chr12 65684529 65684556 -78597933 + AT_rich Low_complexity Low_complexity 1 27 0 2869 159 28 44 chr12 65684561 65684797 -78597692 - L1MB3 LINE L1 -16 6167 5929 2221 151 3 19 chr12 65684797 65685168 -78597321 + MLT1A1 LTR MaLR 1 365 0 2869 159 28 44 chr12 65685168 65685317 -78597172 - L1MB3 LINE L1 -254 5929 5779 357 24 0 0 chr12 65685317 65685359 -78597130 + (TG)n Simple_repeat Simple_repeat 1 42 0 2869 159 28 44 chr12 65685359 65685607 -78596882 - L1MB3 LINE L1 -404 5779 5543 1068 180 13 111 chr12 65685607 65685996 -78596493 - L1MB3 LINE L1 -946 5200 4850 1392 161 11 39 chr12 65685998 65686258 -78596231 + AluJo SINE Alu 38 290 -22 550 297 76 20 chr12 65686321 65686570 -78595919 - L1MC/D LINE L1 -1550 4596 4334 2202 69 3 28 chr12 65686625 65686944 -78595545 + AluY SINE Alu 1 312 0 524 291 104 12 chr12 65687472 65687953 -78594536 - L1M4 LINE L1 -852 5294 4770 674 126 11 55 chr12 65688173 65688305 -78594184 + (TTCC)n Simple_repeat Simple_repeat 4 127 -50 2299 58 16 7 chr12 65688305 65688613 -78593876 - AluY SINE Alu 0 311 1 674 126 11 55 chr12 65688613 65688662 -78593827 + (TTCC)n Simple_repeat Simple_repeat 127 177 0 1453 171 11 7 chr12 65688665 65688934 -78593555 - L1MC1 LINE L1 -4 6329 6060 1069 118 12 0 chr12 65688935 65689105 -78593384 - L1MC1 LINE L1 -735 5598 5427 23 86 0 0 chr12 65689106 65689164 -78593325 + AT_rich Low_complexity Low_complexity 1 58 0 292 211 0 0 chr12 65690814 65690871 -78591618 + L2 LINE L2 3257 3313 0 1913 147 0 3 chr12 65691142 65691482 -78591007 + AluJo SINE Alu 1 339 0 1002 268 33 10 chr12 65691608 65691910 -78590579 - LTR16A LTR ERVL -20 430 122 2469 319 62 33 chr12 65692006 65693476 -78589013 - HERV16 LTR ERVL -1900 3096 1810 231 226 20 108 chr12 65693543 65693645 -78588844 - MIR SINE MIR -71 191 99 1491 181 104 9 chr12 65694573 65694911 -78587578 - MLT1B LTR MaLR 0 390 21 1919 102 123 36 chr12 65694911 65695244 -78587245 - THE1B LTR MaLR 0 364 3 2368 96 0 0 chr12 65695783 65696076 -78586413 - AluSc SINE Alu -16 293 1 188 371 91 14 chr12 65697110 65697253 -78585236 + L3b LINE CR1 1412 1565 -18 2203 114 0 7 chr12 65697834 65698141 -78584348 - AluSg SINE Alu -5 305 1 2054 75 52 0 chr12 65699217 65699520 -78582969 - AluY SINE Alu 0 317 1 241 274 126 0 chr12 65699547 65699642 -78582847 + MIR SINE MIR 90 196 -66 2210 124 16 47 chr12 65699924 65700311 -78582178 - THE1C LTR MaLR 0 375 1 243 61 0 0 chr12 65701943 65701976 -78580513 + (TG)n Simple_repeat Simple_repeat 1 33 0 235 375 12 0 chr12 65702365 65702445 -78580044 - L2 LINE L2 -216 3056 2976 731 140 12 6 chr12 65702661 65702905 -78579584 + AluJb SINE Alu 1 294 -18 22792 171 26 26 chr12 65703258 65706316 -78576173 + L1PA8A LINE L1 3 3057 -3413 1952 151 10 3 chr12 65706316 65706621 -78575868 + AluSx SINE Alu 5 311 -1 22792 171 26 26 chr12 65706621 65706818 -78575671 + L1PA8A LINE L1 3057 3252 -3218 1888 116 91 0 chr12 65706818 65707093 -78575396 + AluSx SINE Alu 1 300 -12 22792 171 26 26 chr12 65707093 65707726 -78574763 + L1PA8A LINE L1 3252 3883 -2587 183 80 0 0 chr12 65707726 65707751 -78574738 + (CAA)n Simple_repeat Simple_repeat 3 27 0 22792 171 26 26 chr12 65707751 65710218 -78572271 + L1PA8A LINE L1 3883 6439 -31 207 100 0 0 chr12 65710225 65710255 -78572234 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 570 201 82 0 chr12 65710334 65710468 -78572021 + MLT1H LTR MaLR 382 526 -23 237 264 0 28 chr12 65710602 65710674 -78571815 - L2 LINE L2 -13 3300 3231 182 54 0 81 chr12 65711128 65711165 -78571324 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2399 218 28 5 chr12 65711378 65711992 -78570497 + L1ME1 LINE L1 5534 6161 -5 2037 132 37 6 chr12 65712197 65712523 -78569966 - MER1B DNA MER1_type 0 337 2 24 32 0 0 chr12 65712540 65712571 -78569918 + AT_rich Low_complexity Low_complexity 1 31 0 9370 121 24 5 chr12 65712577 65714067 -78568422 + Tigger1 DNA MER2_type 56 1574 -844 3544 145 26 13 chr12 65714067 65714682 -78567807 + Tigger1 DNA MER2_type 1796 2418 0 249 33 0 0 chr12 65715110 65715140 -78567349 + (TG)n Simple_repeat Simple_repeat 1 30 0 363 23 0 0 chr12 65719458 65719502 -78562987 + (CA)n Simple_repeat Simple_repeat 1 44 0 24 32 0 0 chr12 65720637 65720668 -78561821 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr12 65720679 65720708 -78561781 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr12 65721924 65721953 -78560536 + (CATA)n Simple_repeat Simple_repeat 4 32 0 21 0 0 0 chr12 65722854 65722875 -78559614 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr12 65723102 65723129 -78559360 + AT_rich Low_complexity Low_complexity 1 27 0 287 292 0 0 chr12 65724522 65724587 -78557902 + MIR SINE MIR 64 128 -80 1890 140 7 23 chr12 65724644 65724944 -78557545 + AluJb SINE Alu 1 295 -17 234 105 0 0 chr12 65725345 65725383 -78557106 + (ATG)n Simple_repeat Simple_repeat 3 40 0 188 161 0 0 chr12 65725684 65725715 -78556774 - L2 LINE L2 -1 3312 3282 2048 132 0 3 chr12 65725759 65726046 -78556443 + AluJb SINE Alu 1 286 -26 1478 187 29 44 chr12 65726066 65726409 -78556080 - MLT1A1 LTR MaLR -25 340 3 248 291 25 13 chr12 65726410 65726489 -78556000 - L2 LINE L2 -44 3269 3190 358 219 61 12 chr12 65726878 65726960 -78555529 - MER5A DNA MER1_type -95 94 9 384 316 41 0 chr12 65728035 65728133 -78554356 + L2 LINE L2 3151 3252 -20 371 360 20 13 chr12 65730462 65730615 -78551874 + MIR3 SINE MIR 32 185 -23 192 352 37 49 chr12 65730653 65730815 -78551674 + L2 LINE L2 3096 3255 -17 245 333 145 0 chr12 65730969 65731086 -78551403 - MIR SINE MIR -93 169 36 1624 234 83 9 chr12 65731099 65731534 -78550955 + LTR40a LTR ERVL 53 519 0 1808 172 34 0 chr12 65731672 65731969 -78550520 - AluJo SINE Alu 0 312 6 712 347 91 16 chr12 65732006 65732502 -78549987 - L2 LINE L2 -610 2704 2172 483 305 150 0 chr12 65732919 65733106 -78549383 - MIR SINE MIR -34 228 14 21 0 0 0 chr12 65733780 65733801 -78548688 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr12 65734101 65734129 -78548360 + AT_rich Low_complexity Low_complexity 1 28 0 365 347 41 18 chr12 65734581 65734751 -78547738 - MIR3 SINE MIR -18 190 17 347 278 112 53 chr12 65734951 65735138 -78547351 - L2 LINE L2 0 3313 3116 226 325 71 16 chr12 65735167 65735293 -78547196 + L3 LINE CR1 1326 1458 -119 528 346 73 29 chr12 65735401 65735653 -78546836 + L2 LINE L2 1916 2156 -1158 1841 125 6 76 chr12 65735653 65735982 -78546507 - AluSx SINE Alu -6 306 1 528 346 73 29 chr12 65735982 65736211 -78546278 + L2 LINE L2 2156 2418 -896 2285 78 14 10 chr12 65736565 65736861 -78545628 - AluSx SINE Alu -15 297 1 515 326 26 31 chr12 65736910 65737137 -78545352 - MIR SINE MIR -6 256 31 285 98 0 0 chr12 65737737 65737778 -78544711 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 1681 182 77 3 chr12 65738204 65738544 -78543945 - MLT1A1 LTR MaLR 0 365 1 258 180 33 0 chr12 65738811 65738872 -78543617 + (TAA)n Simple_repeat Simple_repeat 1 63 0 1070 178 4 40 chr12 65739147 65739372 -78543117 + L1PB4 LINE L1 5940 6156 0 2375 86 0 0 chr12 65740118 65740422 -78542067 - AluY SINE Alu -7 304 1 262 373 0 0 chr12 65740654 65740729 -78541760 + MIR SINE MIR 23 97 -165 2127 294 58 68 chr12 65740730 65741020 -78541469 - L1MC5 LINE L1 -105 7856 7565 243 0 0 0 chr12 65741020 65741047 -78541442 + (TG)n Simple_repeat Simple_repeat 2 28 0 2127 294 58 68 chr12 65741047 65742250 -78540239 - L1MC5 LINE L1 -396 7565 6377 25 0 0 0 chr12 65742347 65742372 -78540117 + AT_rich Low_complexity Low_complexity 1 25 0 427 251 42 37 chr12 65742538 65742729 -78539760 - L1MC5 LINE L1 -1881 5927 5736 766 269 61 0 chr12 65743223 65743468 -78539021 - L1MC5 LINE L1 -2134 5674 5415 309 68 0 0 chr12 65743676 65743720 -78538769 + (TG)n Simple_repeat Simple_repeat 1 44 0 * 318 50 0 0 chr12 65743719 65743759 -78538730 + (GA)n Simple_repeat Simple_repeat 1 40 0 522 343 161 17 chr12 65743826 65744483 -78538006 - L2 LINE L2 -645 2669 1918 407 300 100 8 chr12 65744618 65744748 -78537741 + MIR3 SINE MIR 20 161 -47 189 253 51 51 chr12 65744786 65744865 -78537624 - MIR SINE MIR -6 256 178 506 152 11 0 chr12 65745012 65745104 -78537385 - L1PA15 LINE L1 -11 6154 6062 216 0 0 0 chr12 65746286 65746310 -78536179 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 200 359 90 26 chr12 65746647 65746803 -78535686 + L2 LINE L2 2918 3083 -189 3169 172 16 8 chr12 65747041 65747634 -78534855 - MER67C LTR ERV1 0 710 113 1499 131 8 4 chr12 65747634 65747901 -78534588 - MER6 DNA MER2_type 0 865 598 2726 153 22 0 chr12 65747958 65748447 -78534042 - L1PB4 LINE L1 -7 6149 5650 2884 186 49 8 chr12 65748447 65748688 -78533801 - MER6 DNA MER2_type -253 612 382 243 0 0 0 chr12 65748688 65748715 -78533774 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2884 186 49 8 chr12 65748715 65748984 -78533505 - MER6 DNA MER2_type -483 382 81 295 290 172 101 chr12 65749100 65749338 -78533151 - L2 LINE L2 -1 3271 3017 1469 99 9 5 chr12 65749793 65750015 -78532474 - L1PB1 LINE L1 -1 6150 5928 262 136 23 0 chr12 65751447 65751491 -78530998 - L2 LINE L2 -8 3305 3261 663 275 80 86 chr12 65751687 65752164 -78530325 - L2 LINE L2 -5 3308 2835 21 0 0 0 chr12 65752372 65752393 -78530096 + AT_rich Low_complexity Low_complexity 1 21 0 2117 201 102 44 chr12 65752720 65753308 -78529181 + MLT1E3 LTR MaLR 1 622 -2 2220 97 0 36 chr12 65753485 65753793 -78528696 - AluSx SINE Alu -15 297 1 1817 196 25 18 chr12 65754342 65754735 -78527754 - LTR58 LTR ERV1 -15 664 269 269 109 0 0 chr12 65754737 65754783 -78527706 - L1PA4 LINE L1 0 6155 6110 244 196 0 0 chr12 65754783 65754829 -78527660 - LTR58 LTR ERV1 -405 274 229 1604 146 52 0 chr12 65754829 65755096 -78527393 - LTR58 LTR ERV1 -398 281 1 24 32 0 0 chr12 65756765 65756796 -78525693 + AT_rich Low_complexity Low_complexity 1 31 0 230 357 14 0 chr12 65757096 65757228 -78525261 + MIR SINE MIR 19 152 -56 250 255 0 0 chr12 65757453 65757504 -78524985 + (TATG)n Simple_repeat Simple_repeat 1 51 0 376 272 0 29 chr12 65757707 65757810 -78524679 - MLT1J2 LTR MaLR -291 159 60 198 250 79 26 chr12 65757938 65758014 -78524475 + MIR SINE MIR 183 262 0 2215 125 0 0 chr12 65758167 65758464 -78524025 + AluSx SINE Alu 7 303 -9 24 0 0 0 chr12 65758696 65758720 -78523769 + AT_rich Low_complexity Low_complexity 1 24 0 445 303 0 62 chr12 65759455 65759617 -78522872 + MIR SINE MIR 13 164 -98 197 280 0 67 chr12 65759824 65759899 -78522590 + MIR SINE MIR 149 218 -44 1913 158 0 17 chr12 65760366 65760664 -78521825 - AluJb SINE Alu -19 293 1 2325 62 0 17 chr12 65760688 65760980 -78521509 - AluY SINE Alu -24 287 1 22 0 0 0 chr12 65761183 65761205 -78521284 + AT_rich Low_complexity Low_complexity 1 22 0 373 328 118 37 chr12 65761251 65761522 -78520967 + L2 LINE L2 2324 2616 -698 599 165 39 0 chr12 65761572 65761675 -78520814 - AluJo SINE Alu -177 135 29 601 311 11 22 chr12 65761675 65761954 -78520535 + L2 LINE L2 2691 3052 -261 316 300 91 9 chr12 65762011 65762121 -78520368 + L2 LINE L2 3189 3307 -6 32 0 0 0 chr12 65765034 65765066 -78517423 + AT_rich Low_complexity Low_complexity 1 32 0 6792 121 8 21 chr12 65765435 65767004 -78515485 + L1MA2 LINE L1 4739 6287 -17 288 0 0 0 chr12 65767004 65767036 -78515453 + (CA)n Simple_repeat Simple_repeat 2 33 0 230 0 33 0 chr12 65767431 65767461 -78515028 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 323 102 34 chr12 65768966 65769201 -78513288 + MIR SINE MIR 12 262 0 342 67 0 0 chr12 65769262 65769307 -78513182 + (TG)n Simple_repeat Simple_repeat 2 46 0 1857 253 89 19 chr12 65769991 65770576 -78511913 + MLT1E2 LTR MaLR 1 626 0 1276 168 10 0 chr12 65770979 65771187 -78511302 - AluSg/x SINE Alu -18 292 83 384 308 0 46 chr12 65771277 65771407 -78511082 + L2 LINE L2 3190 3313 0 5317 137 25 71 chr12 65771618 65772713 -78509776 - Tigger3b DNA MER2_type 0 1231 188 260 341 0 0 chr12 65772768 65772944 -78509545 + G-rich Low_complexity Low_complexity 1 176 0 771 150 0 0 chr12 65773403 65773530 -78508959 - L1PB1 LINE L1 -14 6137 6011 6210 164 4 6 chr12 65773531 65775405 -78507084 - L1PB1 LINE L1 -207 5944 4074 216 67 0 0 chr12 65775503 65775533 -78506956 + (TG)n Simple_repeat Simple_repeat 1 30 0 328 240 83 48 chr12 65775741 65775960 -78506529 + MLT1J LTR MaLR 3 293 -322 686 204 6 87 chr12 65776206 65776302 -78506187 + FAM SINE Alu 1 78 -233 558 0 0 0 chr12 65776302 65776364 -78506125 + (CATAA)n Simple_repeat Simple_repeat 4 65 0 686 204 6 87 chr12 65776364 65776439 -78506050 + FAM SINE Alu 78 158 -17 219 373 18 9 chr12 65776466 65776576 -78505913 - MIR SINE MIR -150 112 2 1759 167 3 23 chr12 65776606 65776905 -78505584 - AluJo SINE Alu -19 293 1 252 307 123 18 chr12 65777217 65777331 -78505158 - L2 LINE L2 0 3272 3147 1811 128 60 11 chr12 65779380 65779661 -78502828 - AluSx SINE Alu -17 295 1 254 337 34 11 chr12 65780058 65780147 -78502342 + L2 LINE L2 3174 3264 -8 253 82 41 0 chr12 65780678 65780727 -78501762 + (TA)n Simple_repeat Simple_repeat 2 52 0 5103 145 13 27 chr12 65781581 65782526 -78499963 - L1PA16 LINE L1 -16 6150 5188 2423 72 3 3 chr12 65782526 65782833 -78499656 - AluY SINE Alu -4 307 1 5103 145 13 27 chr12 65782833 65782912 -78499577 - L1PA16 LINE L1 -978 5188 5109 270 0 0 0 chr12 65782912 65782942 -78499547 + (TA)n Simple_repeat Simple_repeat 2 31 0 311 322 0 0 chr12 65782942 65783032 -78499457 - L1MC4 LINE L1 -1339 6703 6614 1276 214 4 0 chr12 65783057 65783332 -78499157 - L1 LINE L1 -1097 5049 4774 1405 104 28 9 chr12 65783785 65783997 -78498492 + AluJb SINE Alu 86 301 -11 1935 145 12 15 chr12 65784761 65785099 -78497390 - MER1B DNA MER1_type 0 337 1 2020 148 0 16 chr12 65786210 65786521 -78495968 - AluJb SINE Alu -6 306 1 215 337 69 0 chr12 65786636 65786737 -78495752 + MER91C DNA MER1_type 1 108 -32 706 343 5 0 chr12 65787251 65787464 -78495025 + MIR SINE MIR 47 260 -2 279 234 0 26 chr12 65787973 65788050 -78494439 - L2 LINE L2 -1 3312 3238 344 217 33 22 chr12 65788054 65788146 -78494343 - MIR SINE MIR -102 160 68 * 365 237 77 77 chr12 65788142 65788311 -78494178 + MIR SINE MIR 94 262 0 516 236 40 34 chr12 65789150 65789298 -78493191 + MIR SINE MIR 77 225 -37 524 322 91 26 chr12 65789614 65789965 -78492524 - LTR16A LTR ERVL 0 450 77 525 265 138 6 chr12 65790361 65790528 -78491961 + MIR3 SINE MIR 10 196 -12 634 275 21 47 chr12 65791726 65791962 -78490527 - L2 LINE L2 0 3313 3084 180 0 0 0 chr12 65791978 65791998 -78490491 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 913 179 0 7 chr12 65792001 65792152 -78490337 - FRAM SINE Alu -30 146 1 1238 255 113 17 chr12 65792152 65792652 -78489837 - L2 LINE L2 -238 3075 2541 543 322 30 25 chr12 65792767 65793003 -78489486 + MIR SINE MIR 20 256 -6 183 296 212 67 chr12 65795099 65795518 -78486971 - L2 LINE L2 -20 3293 2814 438 270 36 29 chr12 65795546 65795683 -78486806 - L2 LINE L2 -50 3263 3126 1231 173 40 99 chr12 65795697 65796050 -78486439 - MLT1A2 LTR MaLR 0 374 43 567 310 17 34 chr12 65796109 65796348 -78486141 - L2 LINE L2 -218 3054 2820 256 270 146 22 chr12 65796359 65796448 -78486041 - MIR SINE MIR -117 145 46 213 284 128 20 chr12 65796493 65796595 -78485894 - L2 LINE L2 0 3313 3201 1314 224 111 79 chr12 65797128 65797838 -78484651 + MER20B DNA MER1_type 45 777 -6 292 180 0 0 chr12 65799639 65799689 -78482800 + L2 LINE L2 3214 3263 -9 28 0 0 0 chr12 65799828 65799856 -78482633 + AT_rich Low_complexity Low_complexity 1 28 0 871 215 32 36 chr12 65800413 65800632 -78481857 + MER20 DNA MER1_type 1 218 -1 209 306 83 37 chr12 65801536 65801644 -78480845 - L2 LINE L2 0 3272 3160 211 302 0 0 chr12 65802177 65802240 -78480249 + L2 LINE L2 2325 2387 -927 553 277 103 45 chr12 65802390 65802614 -78479875 - MIR SINE MIR -9 253 17 24 32 0 0 chr12 65802753 65802784 -78479705 + AT_rich Low_complexity Low_complexity 1 31 0 1122 264 10 17 chr12 65803674 65803973 -78478516 - LTR40a LTR ERVL -222 297 1 289 370 34 0 chr12 65804018 65804137 -78478352 + L2 LINE L2 3150 3272 0 762 245 12 70 chr12 65804331 65804572 -78477917 - MIR SINE MIR -23 239 13 426 203 29 0 chr12 65804904 65804973 -78477516 + MER45A DNA AcHobo 3 73 -105 28 0 0 0 chr12 65805085 65805113 -78477376 + AT_rich Low_complexity Low_complexity 1 28 0 518 230 0 24 chr12 65805240 65805366 -78477123 + MER45A DNA AcHobo 47 169 -9 348 24 0 0 chr12 65806472 65806513 -78475976 + (TG)n Simple_repeat Simple_repeat 1 41 0 225 127 18 55 chr12 65806543 65806598 -78475891 + (TG)n Simple_repeat Simple_repeat 1 53 0 496 275 41 23 chr12 65807661 65807832 -78474657 + MIR SINE MIR 53 226 -36 2051 88 7 2 chr12 65808067 65808372 -78474117 - L1PA13 LINE L1 -20 6141 5831 315 261 0 0 chr12 65808476 65808541 -78473948 + L2 LINE L2 3193 3257 -56 237 322 33 0 chr12 65808850 65808940 -78473549 - MIR SINE MIR -83 125 33 1752 94 9 0 chr12 65809180 65809413 -78473076 + AluSp SINE Alu 49 283 -30 194 0 0 37 chr12 65809416 65809443 -78473046 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 257 286 18 0 chr12 65810121 65810177 -78472312 + L2 LINE L2 3209 3265 -7 2067 110 40 7 chr12 65810194 65810494 -78471995 - AluSp SINE Alu -3 310 1 231 196 22 0 chr12 65810798 65810844 -78471645 + (TG)n Simple_repeat Simple_repeat 2 48 0 891 307 72 32 chr12 65811141 65812152 -78470337 + L1ME3A LINE L1 4943 5922 -248 23 0 0 0 chr12 65812644 65812667 -78469822 + AT_rich Low_complexity Low_complexity 1 23 0 1679 163 35 89 chr12 65813111 65813516 -78468973 - MLT1B LTR MaLR -7 383 1 209 273 0 36 chr12 65813562 65813617 -78468872 - L2 LINE L2 -27 3286 3234 301 324 9 19 chr12 65815497 65815602 -78466887 + MIR SINE MIR 13 116 -146 30934 115 12 58 chr12 65815841 65822295 -78460194 + L1PA7 LINE L1 12 6151 -3 204 111 0 0 chr12 65823886 65823922 -78458567 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 2291 103 0 3 chr12 65823925 65824237 -78458252 - AluSx SINE Alu -1 311 1 3138 162 84 19 chr12 65825164 65825831 -78456658 + MER67C LTR ERV1 1 710 0 2226 109 3 3 chr12 65826526 65826829 -78455660 - AluSp SINE Alu -10 303 1 293 342 53 76 chr12 65828217 65828480 -78454009 + L2 LINE L2 2965 3221 -51 233 197 30 45 chr12 65829365 65829431 -78453058 + MIR SINE MIR 100 164 -98 294 313 62 0 chr12 65829440 65829536 -78452953 + MER91C DNA MER1_type 20 121 -19 217 309 29 0 chr12 65829559 65829627 -78452862 + MIR SINE MIR 175 244 -18 297 0 0 0 chr12 65830116 65830149 -78452340 + (TG)n Simple_repeat Simple_repeat 2 34 0 366 298 78 16 chr12 65830397 65830588 -78451901 + MIR SINE MIR 29 231 -31 327 285 58 92 chr12 65831579 65831961 -78450528 - MLT1K LTR MaLR -2 586 218 591 333 131 27 chr12 65832587 65833200 -78449289 + L2 LINE L2 2604 3272 0 324 266 35 35 chr12 65834940 65835053 -78447436 + L2 LINE L2 3158 3270 -43 614 321 92 0 chr12 65835432 65835650 -78446839 + MIR SINE MIR 8 245 -17 23 33 0 0 chr12 65835766 65835796 -78446693 + AT_rich Low_complexity Low_complexity 1 30 0 1717 109 8 11 chr12 65835796 65836063 -78446426 - L1PB2 LINE L1 -2 6149 5884 1199 298 25 25 chr12 65836218 65836705 -78445784 + MARNA DNA Mariner 43 529 -57 224 346 0 13 chr12 65837581 65837659 -78444830 - L2 LINE L2 0 3313 3237 * 1669 272 119 18 chr12 65837651 65838262 -78444227 - L2 LINE L2 -1199 2115 1443 218 271 0 0 chr12 65839196 65839244 -78443245 + L2 LINE L2 3256 3303 -10 198 239 0 0 chr12 65840661 65840732 -78441757 + CT-rich Low_complexity Low_complexity 2 72 0 261 57 0 0 chr12 65841375 65841410 -78441079 + (GA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr12 65841653 65841675 -78440814 + AT_rich Low_complexity Low_complexity 1 22 0 1147 308 86 20 chr12 65842169 65842211 -78440278 + L2 LINE L2 2454 2492 -821 474 259 7 15 chr12 65842211 65842346 -78440143 + MER94 DNA DNA 1 134 0 1147 308 86 20 chr12 65842346 65842853 -78439636 + L2 LINE L2 2492 3041 -272 4874 176 24 16 chr12 65842955 65844083 -78438406 - L1MB3 LINE L1 0 6183 5065 233 29 0 29 chr12 65844083 65844118 -78438371 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1924 138 133 21 chr12 65844126 65844511 -78437978 - MSTA LTR MaLR 0 428 1 4874 176 24 16 chr12 65844511 65844586 -78437903 - L1MB3 LINE L1 -1124 5059 4963 298 274 142 18 chr12 65844613 65844726 -78437763 + L2 LINE L2 3187 3313 0 27 0 0 0 chr12 65844806 65844833 -78437656 + AT_rich Low_complexity Low_complexity 1 27 0 976 198 5 25 chr12 65845147 65845349 -78437140 - Tigger5 DNA MER2_type -324 1999 1802 1032 218 24 10 chr12 65845363 65845569 -78436920 - Tigger5 DNA MER2_type -2109 214 6 21 0 0 0 chr12 65846555 65846576 -78435913 + AT_rich Low_complexity Low_complexity 1 21 0 196 304 0 0 chr12 65847141 65847187 -78435302 + L2 LINE L2 3221 3266 -6 746 227 101 15 chr12 65847190 65847388 -78435101 + MIR SINE MIR 8 222 -40 264 188 128 77 chr12 65847681 65847798 -78434691 + L2 LINE L2 3149 3271 -1 4277 74 7 2 chr12 65847932 65848501 -78433988 + L1PA11 LINE L1 5593 6164 -10 2091 117 0 0 chr12 65848503 65848825 -78433664 + AluSx SINE Alu 1 322 0 23 33 0 0 chr12 65849286 65849316 -78433173 + AT_rich Low_complexity Low_complexity 1 30 0 192 250 0 0 chr12 65849357 65849401 -78433088 - MIR SINE MIR -67 141 98 2086 206 102 41 chr12 65849612 65849717 -78432772 + MLT1E3 LTR MaLR 1 622 -2 2135 206 27 35 chr12 65849717 65850198 -78432291 + MLT1E3 LTR MaLR 146 622 -2 2220 97 0 36 chr12 65850375 65850683 -78431806 - AluSx SINE Alu -15 297 1 1817 196 25 18 chr12 65851232 65851625 -78430864 - LTR58 LTR ERV1 -15 664 269 269 109 0 0 chr12 65851627 65851673 -78430816 - L1PA4 LINE L1 0 6155 6110 244 196 0 0 chr12 65851673 65851719 -78430770 - LTR58 LTR ERV1 -405 274 229 1604 146 52 0 chr12 65851719 65851986 -78430503 - LTR58 LTR ERV1 -398 281 1 24 32 0 0 chr12 65853655 65853686 -78428803 + AT_rich Low_complexity Low_complexity 1 31 0 230 357 14 0 chr12 65853987 65854119 -78428370 + MIR SINE MIR 19 152 -56 250 255 0 0 chr12 65854344 65854395 -78428094 + (TATG)n Simple_repeat Simple_repeat 1 51 0 376 272 0 29 chr12 65854598 65854701 -78427788 - MLT1J2 LTR MaLR -291 159 60 198 250 79 26 chr12 65854829 65854905 -78427584 + MIR SINE MIR 183 262 0 2125 119 0 7 chr12 65855065 65855359 -78427130 + AluSx SINE Alu 12 303 -9 24 0 0 0 chr12 65855591 65855615 -78426874 + AT_rich Low_complexity Low_complexity 1 24 0 445 303 0 62 chr12 65856350 65856512 -78425977 + MIR SINE MIR 13 164 -98 197 280 0 67 chr12 65856719 65856794 -78425695 + MIR SINE MIR 149 218 -44 1786 158 7 20 chr12 65857261 65857558 -78424931 - AluJb SINE Alu -19 293 1 2282 62 3 17 chr12 65857582 65857873 -78424616 - AluY SINE Alu -24 287 1 22 0 0 0 chr12 65858076 65858098 -78424391 + AT_rich Low_complexity Low_complexity 1 22 0 373 328 118 37 chr12 65858144 65858415 -78424074 + L2 LINE L2 2324 2616 -698 599 165 39 0 chr12 65858465 65858568 -78423921 - AluJo SINE Alu -177 135 29 601 311 11 22 chr12 65858568 65858847 -78423642 + L2 LINE L2 2691 3052 -261 316 300 91 9 chr12 65858904 65859014 -78423475 + L2 LINE L2 3189 3307 -6 32 0 0 0 chr12 65861927 65861959 -78420530 + AT_rich Low_complexity Low_complexity 1 32 0 6792 121 8 21 chr12 65862328 65863897 -78418592 + L1MA2 LINE L1 4739 6287 -17 288 0 0 0 chr12 65863897 65863929 -78418560 + (CA)n Simple_repeat Simple_repeat 2 33 0 230 0 33 0 chr12 65864324 65864354 -78418135 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 323 102 34 chr12 65865859 65866094 -78416395 + MIR SINE MIR 12 262 0 342 67 0 0 chr12 65866155 65866200 -78416289 + (TG)n Simple_repeat Simple_repeat 2 46 0 1857 253 89 19 chr12 65866884 65867469 -78415020 + MLT1E2 LTR MaLR 1 626 0 1276 168 10 0 chr12 65867872 65868080 -78414409 - AluSg/x SINE Alu -18 294 85 384 308 0 46 chr12 65868170 65868300 -78414189 + L2 LINE L2 3190 3313 0 6494 129 26 69 chr12 65868511 65869797 -78412692 - Tigger3b DNA MER2_type 0 1231 1 560 146 10 10 chr12 65869985 65870081 -78412408 + MLT1E LTR MaLR 496 591 -2 509 266 79 67 chr12 65870089 65870356 -78412133 + L1MEd LINE L1 771 1040 -5079 822 270 76 38 chr12 65870370 65870714 -78411775 + L2 LINE L2 2942 3298 -15 1394 190 6 72 chr12 65870719 65870875 -78411614 - AluJo SINE Alu -10 302 137 330 98 0 0 chr12 65870875 65870926 -78411563 + (CA)n Simple_repeat Simple_repeat 2 52 0 1394 190 6 72 chr12 65870926 65870945 -78411544 - AluJo SINE Alu -175 137 118 2365 59 0 0 chr12 65870945 65871231 -78411258 - AluY SINE Alu -22 289 4 1394 190 6 72 chr12 65871231 65871375 -78411114 - AluJo SINE Alu -194 118 3 509 298 42 18 chr12 65871477 65871645 -78410844 + L2 LINE L2 3137 3308 -5 437 284 117 8 chr12 65871653 65872000 -78410489 + L1MEd LINE L1 1103 1530 -4780 22 35 0 0 chr12 65872004 65872033 -78410456 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr12 65872489 65872511 -78409978 + AT_rich Low_complexity Low_complexity 1 22 0 587 303 113 17 chr12 65872634 65873158 -78409331 + L1MEd LINE L1 3167 3740 -2389 26 0 0 0 chr12 65873608 65873634 -78408855 + AT_rich Low_complexity Low_complexity 1 26 0 528 266 42 68 chr12 65874127 65874390 -78408099 + MER112 DNA MER1_type 4 259 -1 1862 162 80 3 chr12 65874752 65875091 -78407398 - MLT1A1 LTR MaLR 0 365 1 695 282 75 9 chr12 65876127 65876340 -78406149 - MIR SINE MIR -2 260 34 24 0 0 0 chr12 65877492 65877516 -78404973 + AT_rich Low_complexity Low_complexity 1 24 0 1533 159 16 8 chr12 65877572 65877829 -78404660 + AluJb SINE Alu 9 267 -45 246 174 0 0 chr12 65877839 65877885 -78404604 + (CA)n Simple_repeat Simple_repeat 1 46 0 745 242 19 6 chr12 65879443 65879604 -78402885 + MER63 DNA MER1_type 2 790 -272 2401 64 0 7 chr12 65879778 65880075 -78402414 - AluY SINE Alu -16 295 1 2217 115 23 47 chr12 65881856 65882240 -78400249 + THE1C LTR MaLR 1 375 0 305 321 107 0 chr12 65882951 65883123 -78399366 - MIR3 SINE MIR -57 205 15 505 92 23 0 chr12 65883376 65883463 -78399026 + L1PA13 LINE L1 6070 6158 -5 21 36 0 0 chr12 65886673 65886701 -78395788 + AT_rich Low_complexity Low_complexity 1 28 0 3828 35 0 0 chr12 65886739 65887195 -78395294 - L1PA4 LINE L1 -3 6152 5697 22 0 0 0 chr12 65887372 65887394 -78395095 + AT_rich Low_complexity Low_complexity 1 22 0 408 40 0 0 chr12 65887911 65887961 -78394528 + (CA)n Simple_repeat Simple_repeat 1 50 0 184 224 41 41 chr12 65888328 65888377 -78394112 + L3b LINE CR1 1524 1572 -11 324 262 134 30 chr12 65889078 65889242 -78393247 + MIR SINE MIR 79 259 -3 202 243 108 0 chr12 65889240 65889314 -78393175 + MIR SINE MIR 110 191 -71 * 1472 199 95 41 chr12 65889629 65890071 -78392418 - MLT1C LTR MaLR -1 466 1 222 343 14 0 chr12 65890163 65890233 -78392256 + MIR SINE MIR 5 75 -187 757 205 67 0 chr12 65890399 65890574 -78391915 + MER5A DNA MER1_type 2 189 0 1173 211 0 9 chr12 65891716 65892009 -78390480 + MER2 DNA MER2_type 1 338 -7 1149 211 108 12 chr12 65892016 65892348 -78390141 - L1MA9 LINE L1 -44 6268 5905 338 296 11 111 chr12 65892639 65892828 -78389661 - MER5A DNA MER1_type -1 188 19 565 324 52 97 chr12 65894049 65894141 -78388348 + L2 LINE L2 2714 2809 -463 841 239 0 52 chr12 65894141 65894323 -78388166 + MER20 DNA MER1_type 2 171 -48 2674 29 3 0 chr12 65894323 65894633 -78387856 + AluY SINE Alu 1 311 0 841 239 0 52 chr12 65894633 65894680 -78387809 + MER20 DNA MER1_type 171 219 0 565 324 52 97 chr12 65894680 65895167 -78387322 + L2 LINE L2 2809 3268 -4 495 138 0 0 chr12 65896359 65896439 -78386050 + MER116 DNA Mariner 1 80 0 186 401 72 22 chr12 65898245 65898467 -78384022 - L3 LINE CR1 -989 588 356 3259 67 0 67 chr12 65898792 65899268 -78383221 - MLT2A1 LTR ERVL 0 444 1 269 98 0 39 chr12 65899340 65899391 -78383098 + MIR SINE MIR 135 183 -79 1544 314 186 9 chr12 65899448 65900189 -78382300 + L2 LINE L2 9 880 -2434 279 0 0 0 chr12 65900520 65900551 -78381938 + (GA)n Simple_repeat Simple_repeat 2 32 0 363 355 38 16 chr12 65900906 65901092 -78381397 + MIR SINE MIR 67 256 -6 26 0 0 0 chr12 65901247 65901273 -78381216 + AT_rich Low_complexity Low_complexity 1 26 0 409 345 27 0 chr12 65902494 65902642 -78379847 + MIR SINE MIR 2 153 -109 25 0 0 0 chr12 65904479 65904504 -78377985 + AT_rich Low_complexity Low_complexity 1 25 0 1669 117 4 0 chr12 65904945 65905193 -78377296 - L1PA16 LINE L1 -9 6157 5909 2676 145 18 15 chr12 65905193 65905878 -78376611 - L1PA16 LINE L1 -464 5702 5015 243 353 103 19 chr12 65907426 65907582 -78374907 + L2 LINE L2 3103 3271 -1 355 187 40 0 chr12 65907781 65907856 -78374633 + MIR SINE MIR 177 254 -8 191 36 36 0 chr12 65907857 65907885 -78374604 + (TTA)n Simple_repeat Simple_repeat 1 29 0 386 338 7 7 chr12 65908015 65908151 -78374338 + L2 LINE L2 2686 2821 -493 1356 99 5 0 chr12 65908886 65909078 -78373411 + L1PB1 LINE L1 5959 6151 0 1348 231 54 0 chr12 65909263 65909561 -78372928 - MER58B DNA MER1_type -1 340 27 297 377 42 37 chr12 65909730 65909995 -78372494 + L2 LINE L2 2780 3043 -229 24 67 0 0 chr12 65910416 65910461 -78372028 + AT_rich Low_complexity Low_complexity 1 45 0 204 40 0 0 chr12 65910505 65910530 -78371959 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 7545 25 0 18 chr12 65910536 65911898 -78370591 - L1PA4 LINE L1 -6 6149 4793 182 357 80 27 chr12 65912854 65912966 -78369523 + L2 LINE L2 3150 3267 -5 403 277 113 14 chr12 65913091 65913232 -78369257 - MIR SINE MIR -12 250 96 242 269 130 19 chr12 65913243 65913351 -78369138 + MIR SINE MIR 143 262 0 256 311 0 14 chr12 65913357 65913431 -78369058 - MIR SINE MIR -170 92 20 1288 165 21 0 chr12 65914286 65914528 -78367961 - L1MB3 LINE L1 0 6183 5937 379 306 19 19 chr12 65914734 65914842 -78367647 + L2 LINE L2 3165 3272 0 412 296 122 28 chr12 65915019 65915232 -78367257 - L2 LINE L2 -1 3312 3080 1889 161 0 10 chr12 65915706 65916016 -78366473 - AluJb SINE Alu -5 307 1 226 102 0 82 chr12 65918469 65918518 -78363971 - MIR SINE MIR -113 149 105 7473 89 16 170 chr12 65918594 65920227 -78362262 - SVA Other Other 0 1386 4 21 0 0 0 chr12 65920749 65920770 -78361719 + AT_rich Low_complexity Low_complexity 1 21 0 291 315 102 9 chr12 65920904 65921012 -78361477 + L2 LINE L2 3155 3272 0 2407 128 63 2 chr12 65922242 65922657 -78359832 + L1MA6 LINE L1 5860 6299 -1 319 316 84 0 chr12 65922748 65922843 -78359646 - L3 LINE CR1 -7 1570 1468 * 1059 274 112 39 chr12 65922842 65923306 -78359183 - L2 LINE L2 0 3313 2816 182 37 37 0 chr12 65924106 65924133 -78358356 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 290 313 60 0 chr12 65924521 65924604 -78357885 + MIR SINE MIR 54 141 -121 286 343 126 0 chr12 65924619 65924762 -78357727 + MIR3 SINE MIR 9 169 -39 3085 186 22 16 chr12 65925054 65925720 -78356769 - L1MA9 LINE L1 -38 6274 5605 1477 262 28 28 chr12 65926562 65927298 -78355191 - L2 LINE L2 -17 3296 2572 2441 272 39 8 chr12 65927299 65928020 -78354469 - L2 LINE L2 -2229 1085 343 3656 126 2 11 chr12 65928596 65929127 -78353362 + MER1A DNA MER1_type 2 527 0 1346 236 45 87 chr12 65929443 65929973 -78352516 - L1ME3A LINE L1 -174 5996 5489 438 282 38 0 chr12 65930614 65930745 -78351744 - MIR SINE MIR -32 230 95 730 251 128 0 chr12 65931668 65931887 -78350602 + MIR SINE MIR 11 257 -5 613 350 66 10 chr12 65932655 65933092 -78349397 + L2 LINE L2 2590 3057 -256 318 259 59 12 chr12 65933156 65933241 -78349248 - L1MC4 LINE L1 -1339 6703 6615 385 301 91 7 chr12 65933263 65933406 -78349083 + L2 LINE L2 3159 3313 0 719 293 30 23 chr12 65933579 65933842 -78348647 - LTR16C LTR ERVL -17 474 210 916 156 19 149 chr12 65934395 65934703 -78347786 - L1MB8 LINE L1 -13 6165 5898 847 307 84 38 chr12 65934736 65935484 -78347005 - L2 LINE L2 -4 3309 2520 809 318 146 27 chr12 65935484 65936161 -78346328 - L2 LINE L2 -1159 2155 1398 374 308 71 14 chr12 65937228 65937404 -78345085 + MIR SINE MIR 4 185 -63 260 365 0 0 chr12 65937517 65937602 -78344887 - L2 LINE L2 -44 3269 3185 * 2678 274 110 29 chr12 65937600 65938787 -78343702 - L2 LINE L2 -401 2913 1630 190 315 43 22 chr12 65938848 65938940 -78343549 - L2 LINE L2 -504 2810 2717 709 228 35 6 chr12 65939103 65939274 -78343215 - MIR SINE MIR -55 207 32 182 271 0 51 chr12 65939620 65939679 -78342810 - MIR SINE MIR -42 220 165 2485 48 20 0 chr12 65939731 65940026 -78342463 + AluY SINE Alu 1 301 -10 221 297 0 16 chr12 65940026 65940084 -78342405 + L2 LINE L2 3256 3312 -1 219 156 0 44 chr12 65941772 65941817 -78340672 + L2 LINE L2 3271 3313 0 31 44 0 0 chr12 65941972 65942017 -78340472 + AT_rich Low_complexity Low_complexity 1 45 0 182 115 0 0 chr12 65942463 65942489 -78340000 - L2 LINE L2 -9 3263 3238 1021 128 0 0 chr12 65943767 65943900 -78338589 + AluSq/x SINE Alu 3 135 -178 2092 128 16 0 chr12 65943900 65944205 -78338284 + AluSx SINE Alu 1 310 -2 293 244 85 12 chr12 65946029 65946111 -78336378 + L2 LINE L2 3137 3224 -48 630 335 119 5 chr12 65946115 65946494 -78335995 - L2 LINE L2 0 3313 2892 1865 103 0 4 chr12 65946682 65946935 -78335554 + AluSc SINE Alu 26 277 -32 396 0 0 0 chr12 65946936 65946980 -78335509 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 11779 71 2 4 chr12 65947912 65950243 -78332246 - L1PA6 LINE L1 0 6154 3808 194 176 20 0 chr12 65950651 65950702 -78331787 + T-rich Low_complexity Low_complexity 4 55 0 200 270 75 121 chr12 65951544 65951718 -78330771 + MER5A DNA MER1_type 1 166 -23 * 267 268 3 87 chr12 65951598 65951760 -78330729 - MER5A DNA MER1_type -35 154 1 395 297 118 24 chr12 65952114 65952326 -78330163 - MIR SINE MIR 0 262 31 4268 54 27 4 chr12 65953273 65953827 -78328662 + L1PA5 LINE L1 5588 6154 0 1594 136 10 39 chr12 65954313 65954621 -78327868 - L1MA9 LINE L1 -3 6309 6011 2630 123 70 49 chr12 65954732 65954819 -78327670 + L1MA9 LINE L1 5696 5780 -532 270 0 0 0 chr12 65954819 65954849 -78327640 + (CA)n Simple_repeat Simple_repeat 2 31 0 2630 123 70 49 chr12 65954849 65955329 -78327160 + L1MA9 LINE L1 5780 6275 -37 546 244 76 41 chr12 65956468 65956640 -78325849 - MER5B DNA MER1_type 0 178 1 546 257 11 38 chr12 65956686 65956869 -78325620 - MER5B DNA MER1_type 0 178 1 28 29 0 0 chr12 65956948 65956983 -78325506 + AT_rich Low_complexity Low_complexity 1 35 0 230 338 0 0 chr12 65957823 65957894 -78324595 - LTR33A LTR ERVL -3 520 450 828 262 19 58 chr12 65958074 65958183 -78324306 - L1M4 LINE L1 -1099 5047 4935 526 107 19 68 chr12 65958183 65958286 -78324203 + L1PA12 LINE L1 6069 6166 -2 828 262 19 58 chr12 65958286 65958485 -78324004 - L1M4 LINE L1 -1211 4935 4751 2905 67 3 0 chr12 65958486 65958862 -78323627 - L1PA6 LINE L1 -8 6146 5770 1143 35 0 0 chr12 65958863 65959004 -78323485 - L1PA4 LINE L1 0 6155 6015 188 337 0 33 chr12 65959103 65959195 -78323294 + L2 LINE L2 2971 3059 -213 22 35 0 0 chr12 65960213 65960242 -78322247 + AT_rich Low_complexity Low_complexity 1 29 0 214 362 41 55 chr12 65960347 65960593 -78321896 + L2 LINE L2 2784 3027 -245 187 349 23 12 chr12 65961288 65961374 -78321115 - MIR SINE MIR -10 252 166 429 256 28 67 chr12 65961562 65961742 -78320747 + MIR SINE MIR 90 262 0 265 268 12 24 chr12 65963072 65963154 -78319335 + L2 LINE L2 3192 3272 0 1414 190 35 65 chr12 65963823 65964191 -78318298 + MLT1A1 LTR MaLR 1 357 -8 601 203 0 0 chr12 65964203 65964403 -78318086 + L1M3 LINE L1 5502 5761 -410 1850 190 28 6 chr12 65964923 65965276 -78317213 - MLT1A1 LTR MaLR -2 363 3 199 266 16 117 chr12 65965504 65965632 -78316857 - L2 LINE L2 -216 3056 2942 191 288 68 0 chr12 65965636 65965695 -78316794 + L2 LINE L2 3251 3313 0 4304 103 9 2 chr12 65966072 65966715 -78315774 - L1PA7 LINE L1 -941 5205 4558 6229 68 64 0 chr12 65966715 65967609 -78314880 + L1PA7 LINE L1 5201 6152 -2 323 306 48 24 chr12 65968658 65968814 -78313675 + MIR SINE MIR 15 169 -60 2004 130 71 59 chr12 65969024 65969447 -78313042 + MSTA LTR MaLR 1 428 0 232 273 19 91 chr12 65969786 65969940 -78312549 + MIR SINE MIR 109 251 -11 200 379 97 0 chr12 65969914 65970017 -78312472 - L2 LINE L2 -14 3258 3146 * 918 192 6 6 chr12 65970329 65970496 -78311993 + FAM SINE Alu 9 175 -10 387 311 111 18 chr12 65970810 65971322 -78311167 + L1MC/D LINE L1 4256 4815 -1331 475 310 41 4 chr12 65971665 65971931 -78310558 + L1MC/D LINE L1 5266 5549 -602 248 209 55 55 chr12 65972067 65972177 -78310312 + L1MC/D LINE L1 5773 5882 -1926 1735 129 157 57 chr12 65972663 65973083 -78309406 + MER31B LTR ERV1 1 462 -4 234 184 79 53 chr12 65973096 65973172 -78309317 - MLT1L LTR MaLR -537 78 1 342 0 0 0 chr12 65974689 65974727 -78307762 + (TA)n Simple_repeat Simple_repeat 2 39 0 948 219 9 5 chr12 65974729 65974944 -78307545 - AluSg/x SINE Alu 0 312 97 26 50 0 0 chr12 65975175 65975215 -78307274 + AT_rich Low_complexity Low_complexity 1 40 0 210 273 0 0 chr12 65975632 65975687 -78306802 + (TA)n Simple_repeat Simple_repeat 2 56 0 1782 118 0 0 chr12 65975846 65976084 -78306405 - AluSx SINE Alu -38 274 37 1981 114 7 7 chr12 65976186 65976476 -78306013 + THE1A LTR MaLR 65 354 -1 6200 119 18 0 chr12 65976477 65977366 -78305123 + THE1A-int LTR MaLR 1 905 -675 422 305 92 17 chr12 65978084 65978258 -78304231 + MIR SINE MIR 48 234 -28 276 280 64 54 chr12 65978328 65978526 -78303963 + MIR SINE MIR 15 215 -47 271 330 161 0 chr12 65979278 65979496 -78302993 - MIR SINE MIR -1 261 9 2158 88 201 5 chr12 65979722 65980096 -78302393 - LTR7 LTR ERV1 -3 447 1 329 315 97 38 chr12 65980112 65980350 -78302139 - MIR SINE MIR -9 253 2 284 368 127 19 chr12 65980743 65980955 -78301534 - MIR SINE MIR -8 254 20 184 53 53 26 chr12 65980970 65981008 -78301481 + T-rich Low_complexity Low_complexity 2 40 0 1436 175 45 29 chr12 65981081 65981390 -78301099 + THE1C LTR MaLR 62 375 0 191 415 0 0 chr12 65981453 65981506 -78300983 - L2 LINE L2 -99 3173 3121 295 340 58 19 chr12 65981517 65981673 -78300816 - L2 LINE L2 -1 3271 3110 2250 99 0 0 chr12 65982051 65982335 -78300154 - AluSc SINE Alu -25 284 1 22 0 0 0 chr12 65983214 65983236 -78299253 + AT_rich Low_complexity Low_complexity 1 22 0 1612 161 0 0 chr12 65983424 65983684 -78298805 + L1PB4 LINE L1 5897 6156 0 29 47 0 0 chr12 65984698 65984741 -78297748 + AT_rich Low_complexity Low_complexity 1 43 0 286 341 89 0 chr12 65986821 65986944 -78295545 - L2 LINE L2 -18 3254 3121 4911 159 15 11 chr12 65986969 65987875 -78294614 + L1MB2 LINE L1 5231 6144 -27 410 126 253 0 chr12 65987953 65988048 -78294441 - MLT2B1 LTR ERVL 0 515 397 1729 217 2 72 chr12 65988231 65988664 -78293825 - MLT2B1 LTR ERVL -117 403 1 644 251 103 20 chr12 65989331 65989526 -78292963 + MIR SINE MIR 42 252 -10 265 354 101 32 chr12 65989766 65990043 -78292446 - L2 LINE L2 -5 3267 2972 243 0 0 0 chr12 65990167 65990194 -78292295 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 43030 31 21 1 chr12 65990199 65996216 -78286273 - L1PA2 LINE L1 -13 6142 2 1243 210 66 3 chr12 65996274 65996640 -78285849 - Charlie5 DNA MER1_type 0 2624 2236 456 200 42 0 chr12 65996643 65996738 -78285751 - Charlie5 DNA MER1_type -2507 105 7 214 340 43 0 chr12 65996840 65996934 -78285555 + L2 LINE L2 2939 3036 -277 215 276 40 26 chr12 65997173 65997249 -78285240 - MER91A DNA MER1_type -119 77 1 791 210 14 0 chr12 65997338 65997476 -78285013 - MER45A DNA AcHobo -38 140 1 333 200 207 52 chr12 65997481 65997616 -78284873 + L2 LINE L2 3158 3313 0 208 280 93 27 chr12 65997731 65997806 -78284683 - MIR SINE MIR -97 165 86 224 340 165 10 chr12 65998058 65998155 -78284334 - MIR SINE MIR -63 145 34 3810 101 11 12 chr12 65998593 65999157 -78283332 - L1PB3 LINE L1 -9 6145 5583 406 147 0 0 chr12 65999158 65999226 -78283263 - L1PA15 LINE L1 -143 6022 5955 657 143 0 18 chr12 65999226 65999337 -78283152 + L1PA15 LINE L1 6053 6162 -3 8663 188 23 12 chr12 65999338 65999416 -78283073 - L1PB3 LINE L1 -568 5586 5510 356 149 0 0 chr12 65999416 65999490 -78282999 - L1PB3 LINE L1 0 6154 6081 8663 188 23 12 chr12 65999490 66001043 -78281446 - L1PB3 LINE L1 -644 5510 3917 2181 110 0 3 chr12 66001043 66001372 -78281117 - AluSx SINE Alu 0 328 1 8663 188 23 12 chr12 66001372 66001938 -78280551 - L1PB3 LINE L1 -2237 3917 3359 260 156 0 0 chr12 66003610 66003655 -78278834 + MIR SINE MIR 71 115 -147 221 206 21 93 chr12 66003789 66003886 -78278603 + MIR SINE MIR 173 262 0 1633 145 7 45 chr12 66003934 66004223 -78278266 - AluJo SINE Alu -30 282 5 303 358 68 0 chr12 66004272 66004448 -78278041 - MIR SINE MIR -55 207 20 184 295 45 98 chr12 66004527 66004639 -78277850 + L2 LINE L2 1037 1142 -2172 1985 112 4 11 chr12 66004917 66005195 -78277294 + AluSg SINE Alu 1 276 -34 21 0 0 0 chr12 66005590 66005611 -78276878 + AT_rich Low_complexity Low_complexity 1 21 0 330 340 43 7 chr12 66007120 66007261 -78275228 + MIR SINE MIR 117 262 0 6855 34 3 0 chr12 66007494 66008352 -78274137 - L1PA4 LINE L1 -3 6152 5292 260 164 36 0 chr12 66008428 66008483 -78274006 + L2 LINE L2 1519 1575 -1739 16292 92 17 7 chr12 66008484 66009323 -78273166 - L1PA7 LINE L1 0 6154 5325 198 118 0 0 chr12 66009323 66009357 -78273132 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 16292 92 17 7 chr12 66009357 66010562 -78271927 - L1PA7 LINE L1 -829 5325 4065 2233 105 13 13 chr12 66010562 66010866 -78271623 - AluSc SINE Alu -5 304 1 16292 92 17 7 chr12 66010866 66011984 -78270505 - L1PA7 LINE L1 -2089 4065 2960 13414 144 13 108 chr12 66011984 66015348 -78267141 - L1PA7 LINE L1 -3092 3054 12 2628 295 105 54 chr12 66015352 66016780 -78265709 + L2 LINE L2 1557 3060 -253 771 231 98 73 chr12 66016888 66017437 -78265052 - MER34B LTR ERV1 -2 563 1 203 256 29 22 chr12 66017869 66018006 -78264483 + (TAAA)n Simple_repeat Simple_repeat 1 138 0 * 311 200 29 38 chr12 66017922 66018027 -78264462 + (TATAA)n Simple_repeat Simple_repeat 3 106 0 345 252 0 89 chr12 66018603 66018738 -78263751 - MIR SINE MIR -39 223 101 283 318 62 16 chr12 66018781 66018910 -78263579 - MER5A DNA MER1_type 0 189 55 * 363 322 0 17 chr12 66018796 66018911 -78263578 + MER5A DNA MER1_type 34 146 -43 4411 109 31 14 chr12 66018920 66019638 -78262851 + L1MA3 LINE L1 5576 6305 0 447 298 82 13 chr12 66020110 66020268 -78262221 + L3 LINE CR1 1332 1500 -77 22 35 0 0 chr12 66020327 66020356 -78262133 + AT_rich Low_complexity Low_complexity 1 29 0 486 263 29 49 chr12 66021183 66021422 -78261067 - MIR SINE MIR 0 262 33 364 353 97 38 chr12 66021461 66021683 -78260806 + L3 LINE CR1 1072 1322 -255 2392 213 58 30 chr12 66021683 66022222 -78260267 + MLT2B3 LTR ERVL 1 554 0 364 353 97 38 chr12 66022222 66022339 -78260150 + L3 LINE CR1 1322 1431 -146 2134 129 7 7 chr12 66022467 66022776 -78259713 - AluSx SINE Alu -3 309 1 195 344 109 23 chr12 66022829 66022957 -78259532 + L2 LINE L2 3134 3272 0 472 206 68 7 chr12 66025156 66025302 -78257187 - MER3 DNA MER1_type 0 2584 2430 327 211 14 0 chr12 66025306 66025377 -78257112 - MER3 DNA MER1_type -98 111 40 607 244 62 17 chr12 66025445 66025621 -78256868 + MIR SINE MIR 53 236 -26 212 230 122 0 chr12 66027040 66027114 -78255375 + L2 LINE L2 3142 3224 -48 468 62 0 0 chr12 66027521 66027585 -78254904 + (CA)n Simple_repeat Simple_repeat 2 65 0 249 364 104 22 chr12 66028010 66028326 -78254163 + L2 LINE L2 1966 2307 -1007 2273 129 11 50 chr12 66029095 66029474 -78253015 - THE1B LTR MaLR 0 364 1 9700 116 11 34 chr12 66029479 66031091 -78251398 - THE1B-int LTR MaLR -6 1574 1 2765 96 0 3 chr12 66031091 66031456 -78251033 - THE1B LTR MaLR 0 364 1 284 232 54 18 chr12 66031642 66031754 -78250735 + MER113 DNA MER1_type? 293 408 -113 23 0 0 0 chr12 66032194 66032217 -78250272 + AT_rich Low_complexity Low_complexity 1 23 0 227 356 43 9 chr12 66033103 66033218 -78249271 + L2 LINE L2 3190 3308 -5 386 206 114 80 chr12 66034060 66034235 -78248254 - L2 LINE L2 0 3313 3133 1083 321 97 35 chr12 66034360 66035250 -78247239 - L2 LINE L2 -443 2871 1927 198 0 0 0 chr12 66035543 66035565 -78246924 + (T)n Simple_repeat Simple_repeat 1 22 0 1369 6 0 0 chr12 66036219 66036380 -78246109 + L1HS LINE L1 5995 6155 0 1091 291 21 21 chr12 66036838 66036888 -78245601 + L1ME3A LINE L1 5411 5460 -710 2479 115 33 3 chr12 66036888 66037252 -78245237 + THE1C LTR MaLR 1 375 0 1091 291 21 21 chr12 66037252 66037638 -78244851 + L1ME3A LINE L1 5459 5847 -323 1505 168 65 37 chr12 66037657 66037949 -78244540 + MER2 DNA MER2_type 1 283 -62 1953 154 37 42 chr12 66037949 66038326 -78244163 + THE1C LTR MaLR 1 375 0 9303 125 37 34 chr12 66038327 66039900 -78242589 + THE1C-int LTR MaLR 2 1578 -2 2028 155 16 31 chr12 66039902 66040283 -78242206 + THE1C LTR MaLR 1 375 0 1505 168 65 37 chr12 66040283 66040307 -78242182 + MER2 DNA MER2_type 283 331 -14 239 232 12 61 chr12 66041565 66041647 -78240842 + CT-rich Low_complexity Low_complexity 5 82 0 181 339 89 54 chr12 66041854 66041966 -78240523 - L2 LINE L2 0 3272 3157 1198 287 126 43 chr12 66044009 66044654 -78237835 + L2 LINE L2 1479 2176 -1138 1941 145 0 7 chr12 66044819 66045102 -78237387 - AluSx SINE Alu -31 281 1 399 250 18 0 chr12 66045111 66045223 -78237266 + MER53 DNA DNA 76 189 0 978 303 106 50 chr12 66045225 66045888 -78236601 + L2 LINE L2 2176 2875 -439 200 237 0 34 chr12 66045953 66045982 -78236507 + CT-rich Low_complexity Low_complexity 6 34 -28 2293 97 7 7 chr12 66045982 66046292 -78236197 - AluSp SINE Alu -3 310 1 200 237 0 34 chr12 66046292 66046321 -78236168 + CT-rich Low_complexity Low_complexity 34 62 0 360 135 0 0 chr12 66046328 66046402 -78236087 + (CTG)n Simple_repeat Simple_repeat 2 75 0 340 304 48 48 chr12 66046436 66046643 -78235846 + L2 LINE L2 3097 3303 -10 29 0 0 0 chr12 66047986 66048015 -78234474 + AT_rich Low_complexity Low_complexity 1 29 0 235 280 112 9 chr12 66048104 66048211 -78234278 - L2 LINE L2 -6 3307 3190 361 387 6 6 chr12 66048463 66048644 -78233845 - MIR SINE MIR -21 241 61 2972 6 0 0 chr12 66049393 66049741 -78232748 - L1PA2 LINE L1 -480 5675 5328 4176 24 0 4 chr12 66049741 66050221 -78232268 + L1PA2 LINE L1 5665 6153 -2 376 297 8 0 chr12 66050238 66050356 -78232133 - MIR SINE MIR -22 240 122 806 263 50 21 chr12 66050567 66050807 -78231682 - MIR SINE MIR -5 257 11 421 301 22 35 chr12 66052416 66052589 -78229900 + MIR SINE MIR 19 184 -60 180 320 67 0 chr12 66053663 66053738 -78228751 - MIR SINE MIR -9 253 174 293 233 155 39 chr12 66054533 66054636 -78227853 + L2 LINE L2 3193 3307 -6 415 305 52 52 chr12 66054716 66054890 -78227599 - MIR SINE MIR -69 193 20 363 319 84 11 chr12 66055811 66056002 -78226487 + Charlie8 DNA MER1_type 3 207 -2210 1497 191 115 6 chr12 66056113 66056427 -78226062 + MER7A DNA MER2_type 1 346 0 653 232 13 7 chr12 66058476 66058627 -78223862 - AluJb SINE Alu -23 289 138 374 326 51 11 chr12 66058634 66058809 -78223680 + MIR SINE MIR 48 229 -33 603 263 28 47 chr12 66059045 66059258 -78223231 - L2 LINE L2 0 3313 3105 1966 133 77 19 chr12 66059324 66059701 -78222788 - L1MB4 LINE L1 -1 6179 5781 300 154 0 0 chr12 66059701 66059753 -78222736 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 790 21 0 0 chr12 66064261 66064356 -78218133 + L1PA3 LINE L1 6061 6155 0 437 307 129 51 chr12 66064567 66064774 -78217715 - L2 LINE L2 0 3313 3124 180 0 0 0 chr12 66064774 66064794 -78217695 + (GA)n Simple_repeat Simple_repeat 1 20 0 437 307 129 51 chr12 66064794 66065195 -78217294 - L2 LINE L2 -189 3124 2671 1981 95 0 0 chr12 66065594 66065846 -78216643 - AluY SINE Alu -59 252 1 250 268 18 0 chr12 66067251 66067307 -78215182 - L2 LINE L2 -37 3235 3179 181 350 91 21 chr12 66067285 66067471 -78215018 - L2 LINE L2 -631 2683 2485 * 718 304 53 18 chr12 66068232 66068459 -78214030 - MIR SINE MIR 0 262 28 260 325 26 68 chr12 66068737 66068854 -78213635 - MIR SINE MIR -132 130 19 25 31 0 0 chr12 66068932 66068964 -78213525 + AT_rich Low_complexity Low_complexity 1 32 0 303 322 161 17 chr12 66069311 66069485 -78213004 + MIR SINE MIR 13 211 -51 21 0 0 0 chr12 66070205 66070226 -78212263 + AT_rich Low_complexity Low_complexity 1 21 0 814 59 0 0 chr12 66070595 66070722 -78211767 + L1PA4 LINE L1 6031 6157 0 200 31 62 0 chr12 66070741 66070773 -78211716 + A-rich Low_complexity Low_complexity 2 35 0 182 174 22 0 chr12 66072217 66072263 -78210226 + CT-rich Low_complexity Low_complexity 4 50 0 1220 220 145 61 chr12 66072376 66072804 -78209685 - LTR68 LTR ERV1 -276 464 1 190 211 105 0 chr12 66072804 66072861 -78209628 - MIR SINE MIR -40 222 160 2415 44 0 0 chr12 66072862 66073137 -78209352 - AluY SINE Alu -8 303 29 290 184 0 32 chr12 66073203 66073328 -78209161 + (TA)n Simple_repeat Simple_repeat 1 121 0 254 333 7 47 chr12 66073371 66073521 -78208968 - L1MEd LINE L1 -5369 750 607 1349 244 42 31 chr12 66073527 66073978 -78208511 - LTR16A1 LTR ERVL -1 456 1 329 329 44 56 chr12 66074254 66074573 -78207916 - ERVL LTR ERVL -574 5190 4876 540 308 146 19 chr12 66074651 66075028 -78207461 - L2 LINE L2 -56 3257 2833 432 174 0 11 chr12 66075823 66075915 -78206574 - L1MA6 LINE L1 0 6300 6210 450 294 114 101 chr12 66076008 66076102 -78206387 - L2 LINE L2 0 3313 3222 1657 164 40 24 chr12 66076102 66076400 -78206089 + AluJo SINE Alu 1 303 -9 1774 170 7 3 chr12 66076405 66076699 -78205790 + AluSx SINE Alu 1 295 -17 450 294 114 101 chr12 66076699 66077064 -78205425 - L2 LINE L2 -94 3219 2842 252 320 47 0 chr12 66077382 66077510 -78204979 - L1ME4a LINE L1 -17 6104 5971 2388 88 0 0 chr12 66077915 66078223 -78204266 + AluSg SINE Alu 1 308 -2 1878 120 31 50 chr12 66078238 66078620 -78203869 + THE1C LTR MaLR 1 375 0 564 299 75 24 chr12 66078621 66078952 -78203537 - L1ME4a LINE L1 -229 5941 5594 252 59 29 0 chr12 66079143 66079177 -78203312 - L1P2 LINE L1 -542 5612 5578 * 267 24 0 24 chr12 66079176 66079218 -78203271 + L1PA3 LINE L1 6114 6154 -1 358 299 107 11 chr12 66079304 66079481 -78203008 - LTR33A LTR ERVL 0 523 330 807 295 20 8 chr12 66079796 66080040 -78202449 - LTR16B LTR ERVL -14 450 204 229 150 0 0 chr12 66080045 66080085 -78202404 - LTR33A LTR ERVL -419 104 65 21 0 0 0 chr12 66080266 66080287 -78202202 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 66080326 66080347 -78202142 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 66080539 66080568 -78201921 + AT_rich Low_complexity Low_complexity 1 29 0 398 289 19 6 chr12 66080756 66080912 -78201577 - L1ME LINE L1 -347 5774 5617 316 238 103 32 chr12 66081081 66081207 -78201282 - L1ME LINE L1 -526 5595 5461 205 326 11 45 chr12 66081407 66081496 -78200993 + MIR SINE MIR 7 92 -170 27 0 0 0 chr12 66081988 66082015 -78200474 + AT_rich Low_complexity Low_complexity 1 27 0 1786 265 69 34 chr12 66082635 66083449 -78199040 - HAL1 LINE L1 -628 1879 1038 858 286 157 65 chr12 66083518 66084105 -78198384 - HAL1 LINE L1 -1608 899 259 1643 160 39 0 chr12 66084451 66084757 -78197732 - L1MA9 LINE L1 -4 6308 5991 343 354 179 23 chr12 66085232 66085431 -78197058 + L2 LINE L2 2384 2551 -763 2341 80 7 0 chr12 66085431 66085731 -78196758 - AluSp SINE Alu -11 302 1 343 354 179 23 chr12 66085731 66085852 -78196637 + L2 LINE L2 2551 2652 -662 2501 65 3 0 chr12 66085852 66086162 -78196327 - AluY SINE Alu 0 311 1 343 354 179 23 chr12 66086162 66086314 -78196175 + L2 LINE L2 2652 2931 -383 233 291 111 62 chr12 66086364 66086608 -78195881 + L2 LINE L2 3008 3263 -50 201 145 53 66 chr12 66087243 66087319 -78195170 + (TATAA)n Simple_repeat Simple_repeat 2 76 0 734 189 84 48 chr12 66087404 66087631 -78194858 - MER106A DNA MER1_type -1 235 1 253 329 47 40 chr12 66088363 66088512 -78193977 + MIR SINE MIR 79 228 -34 2110 105 7 7 chr12 66088513 66088808 -78193681 + AluSx SINE Alu 1 295 -17 24 85 0 0 chr12 66088878 66088937 -78193552 + AT_rich Low_complexity Low_complexity 1 59 0 291 160 20 0 chr12 66090256 66090306 -78192183 - L2 LINE L2 0 3313 3263 361 271 70 143 chr12 66093713 66094155 -78188334 - L3 LINE CR1 -13 1564 1155 21 36 0 0 chr12 66094928 66094956 -78187533 + AT_rich Low_complexity Low_complexity 1 28 0 798 161 92 0 chr12 66095773 66095947 -78186542 - L1MA6 LINE L1 -1 6299 6110 * 1933 168 20 0 chr12 66095945 66096290 -78186199 + L1 LINE L1 4584 4935 -1211 266 359 44 13 chr12 66097549 66097708 -78184781 + L2 LINE L2 2825 2988 -325 2988 140 75 7 chr12 66097774 66098330 -78184159 - L1PA16 LINE L1 -2 6164 5571 205 345 18 0 chr12 66098493 66098548 -78183941 + L2 LINE L2 3136 3191 -81 658 185 170 0 chr12 66098671 66098806 -78183683 - MER20 DNA MER1_type 0 219 62 231 185 19 56 chr12 66098905 66098959 -78183530 + L2 LINE L2 3262 3313 0 201 328 0 0 chr12 66099739 66099800 -78182689 + L2 LINE L2 2986 3046 -226 278 348 34 17 chr12 66099911 66100029 -78182460 + L2 LINE L2 3185 3304 -9 25 0 0 0 chr12 66100556 66100581 -78181908 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr12 66100601 66100643 -78181846 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr12 66100653 66100682 -78181807 + AT_rich Low_complexity Low_complexity 1 29 0 267 173 0 0 chr12 66100872 66100924 -78181565 + (TA)n Simple_repeat Simple_repeat 2 53 0 429 340 28 0 chr12 66101714 66101855 -78180634 + L2 LINE L2 3168 3312 -1 313 304 47 34 chr12 66101860 66102008 -78180481 + L1ME4a LINE L1 5602 5751 -370 797 125 0 23 chr12 66102148 66102276 -78180213 + L1PA16 LINE L1 6026 6150 -16 366 255 280 0 chr12 66102294 66102533 -78179956 + L1ME4a LINE L1 5816 6121 0 299 234 0 39 chr12 66103485 66103562 -78178927 + MIR SINE MIR 167 240 -22 318 323 169 10 chr12 66103665 66103802 -78178687 + MER5A DNA MER1_type 11 182 -7 23 33 0 0 chr12 66104079 66104109 -78178380 + AT_rich Low_complexity Low_complexity 1 30 0 440 93 41 0 chr12 66104558 66104655 -78177834 + (TA)n Simple_repeat Simple_repeat 2 102 0 209 219 0 0 chr12 66104680 66104721 -78177768 + L2 LINE L2 3269 3309 -4 208 227 64 82 chr12 66104746 66104856 -78177633 - L2 LINE L2 -1458 1856 1749 1351 229 95 60 chr12 66105019 66105643 -78176846 - MLT1G LTR MaLR 0 590 1 24 32 0 0 chr12 66105648 66105679 -78176810 + AT_rich Low_complexity Low_complexity 1 31 0 1552 52 0 0 chr12 66105763 66105956 -78176533 + L1PA5 LINE L1 5962 6154 0 293 312 128 14 chr12 66106455 66106596 -78175893 - MIR SINE MIR -30 232 76 1709 153 23 10 chr12 66106968 66107276 -78175213 - L1PB4 LINE L1 -69 6087 5776 327 146 0 0 chr12 66107276 66107331 -78175158 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 336 109 62 0 chr12 66107362 66107426 -78175063 + L1P5 LINE L1 5724 5791 -365 278 50 25 0 chr12 66107434 66107474 -78175015 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 569 177 37 6 chr12 66107498 66107624 -78174865 - L1M3 LINE L1 -370 5798 5668 25 31 0 0 chr12 66107934 66107966 -78174523 + AT_rich Low_complexity Low_complexity 1 32 0 273 400 58 8 chr12 66109703 66109823 -78172666 + L3 LINE CR1 1404 1529 -48 266 256 23 23 chr12 66109910 66109996 -78172493 + MER103 DNA DNA 38 123 -43 710 270 224 27 chr12 66110296 66110707 -78171782 - MLT1J LTR MaLR -15 496 5 228 86 0 0 chr12 66110869 66110904 -78171585 + (GA)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr12 66111293 66111318 -78171171 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr12 66111837 66111865 -78170624 + AT_rich Low_complexity Low_complexity 1 28 0 184 333 71 30 chr12 66112842 66112941 -78169548 + L2 LINE L2 3211 3313 0 1373 247 60 23 chr12 66113239 66113778 -78168711 - MLT1E LTR MaLR 0 593 11 1000 182 0 0 chr12 66114320 66114485 -78168004 + FRAM SINE Alu 1 165 -1 222 274 0 0 chr12 66116125 66116176 -78166313 + CT-rich Low_complexity Low_complexity 3 53 0 333 0 0 0 chr12 66116491 66116528 -78165961 + (TG)n Simple_repeat Simple_repeat 2 38 0 214 359 160 6 chr12 66116802 66116958 -78165531 - MIR3 SINE MIR -13 195 16 283 139 23 35 chr12 66117053 66117139 -78165350 + CT-rich Low_complexity Low_complexity 2 86 0 203 287 197 8 chr12 66118693 66118815 -78163674 + MIR SINE MIR 52 196 -66 324 0 0 0 chr12 66119130 66119166 -78163323 + (TG)n Simple_repeat Simple_repeat 2 37 0 298 109 35 0 chr12 66119167 66119218 -78163271 - Alu SINE Alu -13 289 249 293 226 60 12 chr12 66119253 66119337 -78163152 - MIR SINE MIR -107 155 68 206 380 85 0 chr12 66120380 66120509 -78161980 - MIR3 SINE MIR -68 140 1 291 206 59 0 chr12 66120848 66120916 -78161573 + L2 LINE L2 2996 3067 -205 4549 83 6 6 chr12 66121000 66121635 -78160854 + L1PA14 LINE L1 5521 6155 -6 519 265 97 11 chr12 66121661 66121846 -78160643 + L2 LINE L2 3095 3295 -18 561 282 12 115 chr12 66121854 66121980 -78160509 + L2 LINE L2 2185 2322 -992 2358 65 10 0 chr12 66121980 66122272 -78160217 - AluY SINE Alu -16 295 1 561 282 12 115 chr12 66122272 66122475 -78160014 + L2 LINE L2 2322 2480 -834 2488 202 20 24 chr12 66122589 66123088 -78159401 - MLT1D LTR MaLR -8 497 1 583 333 19 73 chr12 66123088 66123492 -78158997 + L2 LINE L2 2624 3004 -309 767 295 43 0 chr12 66123759 66123966 -78158523 - MIR SINE MIR -44 218 3 258 230 128 14 chr12 66124295 66124443 -78158046 + L1P5 LINE L1 5279 5443 -711 21 0 0 0 chr12 66124716 66124737 -78157752 + AT_rich Low_complexity Low_complexity 1 21 0 2134 134 0 0 chr12 66124787 66125086 -78157403 + AluSx SINE Alu 1 299 -13 2742 184 121 6 chr12 66125126 66125653 -78156836 - LTR69 LTR ERVL 0 588 1 369 203 365 0 chr12 66126300 66126448 -78156041 + MIR SINE MIR 53 254 -8 867 275 41 33 chr12 66126626 66127020 -78155469 - MLT1J1 LTR MaLR 0 446 64 476 261 89 97 chr12 66128246 66128503 -78153986 - MIR SINE MIR 0 262 8 223 239 45 30 chr12 66128816 66128883 -78153606 - L2 LINE L2 -7 3265 3198 1969 121 79 53 chr12 66129218 66129573 -78152916 - THE1B LTR MaLR 0 364 1 11936 92 1 1 chr12 66129573 66131153 -78151336 - THE1B-int LTR MaLR 0 1580 2 1809 146 95 15 chr12 66131155 66131491 -78150998 - THE1B LTR MaLR -1 363 1 32 75 0 0 chr12 66132455 66132522 -78149967 + AT_rich Low_complexity Low_complexity 1 67 0 536 307 53 22 chr12 66132755 66132980 -78149509 + MIR SINE MIR 28 259 -3 293 313 80 7 chr12 66133606 66133756 -78148733 + MIR SINE MIR 101 261 -1 604 80 0 0 chr12 66133758 66133846 -78148643 - L1PA4 LINE L1 -3 6152 6065 30 0 0 0 chr12 66133949 66133979 -78148510 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr12 66134971 66135010 -78147479 + GC_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 66135046 66135067 -78147422 + GC_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr12 66135175 66135220 -78147269 + GC_rich Low_complexity Low_complexity 1 45 0 372 227 80 11 chr12 66135407 66135495 -78146994 - MLT1A2 LTR MaLR -278 96 3 21 57 0 0 chr12 66135669 66135704 -78146785 + AT_rich Low_complexity Low_complexity 1 35 0 195 273 16 117 chr12 66135725 66135853 -78146636 - L2 LINE L2 -216 3056 2942 191 288 68 0 chr12 66135857 66135916 -78146573 + L2 LINE L2 3251 3313 0 8436 194 26 14 chr12 66136293 66137549 -78144940 - L1P LINE L1 -941 5205 3917 2129 114 0 3 chr12 66137549 66137878 -78144611 - AluSx SINE Alu 0 328 1 8436 194 26 14 chr12 66137878 66138444 -78144045 - L1P LINE L1 -2229 3917 3359 6375 68 31 0 chr12 66139451 66140286 -78142203 - L1PA7 LINE L1 -2 6152 5292 256 164 36 0 chr12 66140362 66140417 -78142072 + L2 LINE L2 1519 1575 -1739 6957 57 3 18 chr12 66140418 66141453 -78141036 - L1PA6 LINE L1 0 6154 5126 1020 265 91 39 chr12 66141454 66142023 -78140466 - L1M4 LINE L1 -1466 4680 4082 18658 62 5 43 chr12 66142213 66144887 -78137602 + L1P LINE L1 2404 4974 -1172 470 320 33 87 chr12 66145016 66145382 -78137107 - L2 LINE L2 -345 2969 2624 2230 227 22 24 chr12 66145382 66145880 -78136609 + MLT1D LTR MaLR 1 497 -8 410 312 15 59 chr12 66145994 66146196 -78136293 - L2 LINE L2 -834 2480 2288 1962 128 10 7 chr12 66146197 66146502 -78135987 + AluSc SINE Alu 1 306 -3 234 0 0 0 chr12 66146502 66146528 -78135961 + (TA)n Simple_repeat Simple_repeat 2 27 0 295 253 11 23 chr12 66148341 66148428 -78134061 + MIR SINE MIR 148 233 -29 2458 43 0 0 chr12 66148771 66149076 -78133413 - AluY SINE Alu 0 305 1 291 160 20 0 chr12 66150609 66150659 -78131830 + L2 LINE L2 3263 3313 0 25 83 0 0 chr12 66151977 66152037 -78130452 + AT_rich Low_complexity Low_complexity 1 60 0 2030 109 10 7 chr12 66152107 66152401 -78130088 - AluSx SINE Alu -17 295 1 37 86 0 0 chr12 66152581 66152674 -78129815 + GC_rich Low_complexity Low_complexity 1 93 0 1319 243 42 33 chr12 66153041 66153493 -78128996 + LTR16A1 LTR ERVL 1 456 -1 268 333 7 47 chr12 66153499 66153649 -78128840 + L1MEd LINE L1 607 750 -5369 623 251 103 20 chr12 66154587 66154782 -78127707 - MIR SINE MIR -10 252 42 610 275 14 54 chr12 66155449 66155725 -78126764 + MLT2B1 LTR ERVL 1 265 -255 24 0 0 0 chr12 66155849 66155873 -78126616 + GC_rich Low_complexity Low_complexity 1 24 0 292 234 0 39 chr12 66157139 66157216 -78125273 + MIR SINE MIR 167 240 -22 249 326 181 14 chr12 66157319 66157457 -78125032 + MER5A DNA MER1_type 11 182 -7 221 317 32 75 chr12 66158823 66159009 -78123480 + L2 LINE L2 2825 3002 -270 286 299 96 6 chr12 66159062 66159219 -78123270 - L1PA16 LINE L1 -13 6153 5983 1843 262 78 16 chr12 66159570 66160810 -78121679 - L1M4 LINE L1 -2452 4396 2944 962 226 165 66 chr12 66160975 66161369 -78121120 + LTR68 LTR ERV1 32 464 -276 231 254 0 32 chr12 66161482 66161545 -78120944 + GA-rich Low_complexity Low_complexity 4 64 0 803 32 0 0 chr12 66162628 66162721 -78119768 + L1PA2 LINE L1 6061 6153 -2 322 282 0 10 chr12 66162750 66162853 -78119636 - MIR SINE MIR -35 227 126 791 250 88 17 chr12 66163067 66163307 -78119182 - MIR SINE MIR -5 257 1 6617 114 7 2 chr12 66163429 66164426 -78118063 + L1P LINE L1 1311 2312 -3834 637 216 9 0 chr12 66164707 66164823 -78117666 - FLAM_C SINE Alu -16 117 1 464 174 0 11 chr12 66165010 66165102 -78117387 + L1MA6 LINE L1 6210 6300 0 521 316 146 16 chr12 66165891 66166267 -78116222 + L2 LINE L2 2833 3257 -56 195 152 0 0 chr12 66166519 66166565 -78115924 + G-rich Low_complexity Low_complexity 1 46 0 343 278 139 65 chr12 66166647 66167068 -78115421 - L1M4 LINE L1 -5461 1388 598 1470 118 25 33 chr12 66167541 66167786 -78114703 + L1PA5 LINE L1 5911 6153 -1 321 340 43 7 chr12 66167999 66168140 -78114349 - MIR SINE MIR 0 262 117 788 243 42 58 chr12 66169189 66169524 -78112965 - L1ME2 LINE L1 -137 6027 5691 271 320 49 30 chr12 66169943 66170146 -78112343 + L2 LINE L2 3097 3303 -10 24 0 0 0 chr12 66171056 66171080 -78111409 + GC_rich Low_complexity Low_complexity 1 24 0 265 268 12 24 chr12 66171936 66172018 -78110471 + L2 LINE L2 3192 3272 0 1083 213 10 9 chr12 66172463 66172867 -78109622 - LTR69 LTR ERVL -122 466 1 856 277 56 54 chr12 66173687 66174077 -78108412 - MLT1J1 LTR MaLR 0 446 56 265 216 124 19 chr12 66174868 66175019 -78107470 + L1PA10 LINE L1 5297 5463 -711 21 0 0 0 chr12 66175272 66175293 -78107196 + AT_rich Low_complexity Low_complexity 1 21 0 1430 189 4 11 chr12 66175343 66175624 -78106865 + AluSx SINE Alu 1 279 -33 2180 104 7 0 chr12 66177046 66177355 -78105134 + AluY SINE Alu 1 311 0 3151 52 7 6 chr12 66227460 66228087 -78054402 - L1P1 LINE L1 -446 5709 5082 2568 117 3 3 chr12 66228124 66228499 -78053990 + THE1C LTR MaLR 1 375 0 4696 124 55 70 chr12 66228499 66229387 -78053102 + THE1C-int LTR MaLR 1 875 -705 992 171 5 9 chr12 66229487 66229698 -78052791 + L1MC/D LINE L1 5275 5484 -875 5798 129 29 17 chr12 66229701 66230884 -78051605 - L1PA10 LINE L1 -611 5557 4369 3874 111 23 12 chr12 66230884 66231479 -78051010 + L1PA10 LINE L1 5556 6168 0 295 304 152 18 chr12 66232710 66232881 -78049608 + MIR SINE MIR 4 197 -65 26 50 0 0 chr12 66233245 66233285 -78049204 + AT_rich Low_complexity Low_complexity 1 40 0 2166 108 3 0 chr12 66233549 66233836 -78048653 - AluSg SINE Alu -22 288 1 5639 229 18 15 chr12 66235171 66236667 -78045822 - L1 LINE L1 -2458 3688 2189 5299 164 30 0 chr12 66236665 66237784 -78044705 + L1PB3 LINE L1 5001 6154 0 * 2512 126 0 0 chr12 66238282 66238646 -78043843 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr12 66239828 66239849 -78042640 + AT_rich Low_complexity Low_complexity 1 21 0 623 285 92 18 chr12 66240686 66240914 -78041575 - MIR SINE MIR -3 259 15 183 80 0 0 chr12 66241171 66241196 -78041293 + (TA)n Simple_repeat Simple_repeat 2 26 0 24 53 0 0 chr12 66245544 66245582 -78036907 + AT_rich Low_complexity Low_complexity 1 38 0 743 274 26 0 chr12 66245954 66246144 -78036345 - MLT1A1 LTR MaLR -1 364 170 1968 122 25 81 chr12 66246145 66246505 -78035984 + THE1C LTR MaLR 1 340 -35 183 80 0 0 chr12 66246510 66246535 -78035954 + (T)n Simple_repeat Simple_repeat 1 25 0 4385 31 0 0 chr12 66246536 66247051 -78035438 - L1PA3 LINE L1 -3 6152 5638 4234 130 88 5 chr12 66247181 66247965 -78034524 + THE1C-int LTR MaLR 732 1580 0 2547 116 16 3 chr12 66247965 66248335 -78034154 + THE1C LTR MaLR 1 375 0 294 250 26 13 chr12 66248369 66248445 -78034044 - MLT1A1 LTR MaLR -190 175 99 2847 141 46 61 chr12 66248445 66249049 -78033440 + LTR49 LTR ERV1 1 595 0 1658 164 36 33 chr12 66249051 66249356 -78033133 + LTR49-int LTR ERV1 1 306 -6025 2107 182 57 26 chr12 66249358 66249876 -78032613 + MLT2A2 LTR ERVL 1 554 0 4433 217 38 47 chr12 66249887 66252180 -78030309 + LTR49-int LTR ERV1 355 2658 -3673 239 188 0 0 chr12 66252219 66252267 -78030222 - MER54B LTR ERVL 0 793 746 3790 183 53 67 chr12 66252267 66253303 -78029186 + LTR49-int LTR ERV1 2718 3739 -2592 266 191 0 0 chr12 66253303 66253350 -78029139 - MSTA LTR MaLR 0 426 380 22757 182 13 30 chr12 66253351 66257666 -78024823 + L1PA8A LINE L1 10 4172 -2274 2113 141 0 0 chr12 66257666 66257971 -78024518 - AluSx SINE Alu -7 305 1 22757 182 13 30 chr12 66257971 66260196 -78022293 + L1PA8A LINE L1 4172 6433 -13 2014 190 60 0 chr12 66260197 66260581 -78021908 - MSTA LTR MaLR -21 407 1 12600 151 25 18 chr12 66260604 66260821 -78021668 + LTR49-int LTR ERV1 3712 3926 -2405 203 0 0 36 chr12 66260821 66260849 -78021640 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 12600 151 25 18 chr12 66260849 66262943 -78019546 + LTR49-int LTR ERV1 3926 6038 -293 401 148 114 0 chr12 66262957 66263045 -78019444 + LTR49 LTR ERV1 247 344 -251 300 213 0 0 chr12 66263014 66263075 -78019414 + LTR29 LTR ERV1 387 447 -175 * 835 139 0 0 chr12 66263105 66263234 -78019255 + MSTB LTR MaLR 1 129 -297 1687 128 46 7 chr12 66263234 66263515 -78018974 + LTR49-int LTR ERV1 6039 6330 -1 2513 149 123 13 chr12 66263516 66264052 -78018437 + LTR49 LTR ERV1 1 595 0 538 158 74 0 chr12 66264052 66264147 -78018342 - MLT1A1 LTR MaLR -263 102 1 255 61 0 0 chr12 66264278 66264311 -78018178 + (T)n Simple_repeat Simple_repeat 1 33 0 25 0 0 0 chr12 66264345 66264370 -78018119 + AT_rich Low_complexity Low_complexity 1 25 0 1383 160 36 16 chr12 66264683 66264933 -78017556 + MSTB LTR MaLR 156 410 -16 392 290 178 18 chr12 66265015 66265184 -78017305 - MIR SINE MIR -14 248 53 2414 80 0 3 chr12 66265195 66265497 -78016992 + AluSx SINE Alu 1 301 -11 225 0 0 0 chr12 66265518 66265543 -78016946 + (GA)n Simple_repeat Simple_repeat 2 26 0 329 153 32 16 chr12 66265692 66265816 -78016673 + A-rich Low_complexity Low_complexity 2 127 0 296 224 35 35 chr12 66266722 66266807 -78015682 - MER117 DNA MER1_type -109 88 4 2001 119 11 0 chr12 66267358 66267644 -78014845 - AluJb SINE Alu -8 304 16 1561 182 0 25 chr12 66269003 66269322 -78013167 - AluJb SINE Alu 0 315 4 804 205 74 21 chr12 66269362 66269578 -78012911 - AluJo SINE Alu 0 311 86 3554 171 29 13 chr12 66270073 66270771 -78011718 - MER67C LTR ERV1 0 710 2 21 0 0 0 chr12 66271538 66271559 -78010930 + AT_rich Low_complexity Low_complexity 1 21 0 471 63 0 0 chr12 66272241 66272304 -78010185 + (TG)n Simple_repeat Simple_repeat 2 64 0 212 308 22 11 chr12 66273931 66274022 -78008467 + MIR SINE MIR 100 191 -71 2102 113 0 27 chr12 66274347 66274648 -78007841 + AluSx SINE Alu 1 293 -19 288 264 47 28 chr12 66274715 66274821 -78007668 + MIR SINE MIR 121 228 -34 459 177 13 0 chr12 66274892 66274971 -78007518 - MER20 DNA MER1_type 0 219 140 180 311 14 54 chr12 66275904 66275978 -78006511 + L3 LINE CR1 346 416 -1161 669 143 0 0 chr12 66276826 66276931 -78005558 + AluSp/q SINE Alu 206 310 -3 747 314 75 30 chr12 66277345 66278288 -78004201 + L1MEc LINE L1 807 1792 -4604 2752 159 16 43 chr12 66278432 66278992 -78003497 + L1PB4 LINE L1 5610 6154 -2 1214 257 87 22 chr12 66279156 66279790 -78002699 + L1MC5 LINE L1 7246 7920 -41 1536 206 53 59 chr12 66279792 66280298 -78002191 - MLT1D LTR MaLR -2 503 1 3519 162 36 16 chr12 66280754 66281366 -78001123 - MER51A LTR ERV1 -9 625 2 521 287 30 50 chr12 66281414 66281714 -78000775 + L1MC5 LINE L1 7193 7486 -475 1307 297 64 35 chr12 66281743 66282733 -77999756 + L1ME2 LINE L1 166 1169 -5048 * 2005 234 154 33 chr12 66282711 66284372 -77998117 + L1ME2 LINE L1 4136 5998 -235 503 272 6 41 chr12 66284384 66284553 -77997936 + L1ME2 LINE L1 6060 6222 -11 283 323 81 0 chr12 66285517 66285703 -77996786 + HAL1b LINE L1 402 602 -746 1059 93 0 0 chr12 66285764 66285904 -77996585 + AluSg/x SINE Alu 156 295 -17 234 349 104 0 chr12 66286341 66286447 -77996042 - L2 LINE L2 -6 3266 3150 848 184 84 21 chr12 66286488 66286595 -77995894 + Charlie5 DNA MER1_type 2371 2470 -154 5133 108 16 29 chr12 66286595 66286938 -77995551 + MER4E LTR ERV1 1 347 -432 1893 107 82 0 chr12 66286938 66287218 -77995271 - AluSg SINE Alu -6 304 2 5133 108 16 29 chr12 66287218 66287663 -77994826 + MER4E LTR ERV1 347 779 0 848 184 84 21 chr12 66287663 66287794 -77994695 + Charlie5 DNA MER1_type 2470 2624 0 877 265 138 90 chr12 66288011 66288464 -77994025 + MLT1G3 LTR MaLR 11 520 -22 301 306 93 60 chr12 66288623 66288956 -77993533 + L1ME LINE L1 2170 2513 -3883 299 216 0 34 chr12 66289468 66289556 -77992933 + L1ME LINE L1 3013 3097 -3118 487 170 0 52 chr12 66289793 66289928 -77992561 - L1MA4 LINE L1 -6 6294 6167 24 67 0 0 chr12 66289968 66290013 -77992476 + AT_rich Low_complexity Low_complexity 1 45 0 4411 182 15 7 chr12 66290341 66290494 -77991995 - L1MA4A LINE L1 -24 6981 6831 1812 151 28 0 chr12 66290494 66290778 -77991711 - AluSx SINE Alu -20 292 1 4411 182 15 7 chr12 66290778 66292164 -77990325 - L1MA4A LINE L1 -174 6831 5368 3542 67 9 2 chr12 66292164 66292610 -77989879 - LTR22A LTR ERVK 0 458 10 10722 220 45 23 chr12 66292610 66297412 -77985077 - L1MA4A LINE L1 -1473 5375 444 2085 119 3 3 chr12 66297412 66297706 -77984783 - AluSg SINE Alu -16 294 1 10722 220 45 23 chr12 66297706 66298158 -77984331 - L1MA4A LINE L1 -6404 444 3 2696 162 9 31 chr12 66298314 66298595 -77983894 - L1MA9 LINE L1 0 6312 6032 3806 219 41 9 chr12 66298595 66300090 -77982399 - L1PB4 LINE L1 -124 6032 4470 3202 195 19 10 chr12 66300086 66300625 -77981864 + L1 LINE L1 3763 4311 -1835 * 2722 13 0 0 chr12 66300625 66300931 -77981558 + AluYa5 SINE Alu 1 306 -5 3202 195 19 10 chr12 66300931 66301089 -77981400 + L1 LINE L1 4311 4466 -1680 306 138 0 0 chr12 66301182 66301240 -77981249 - L1PA13 LINE L1 0 6163 6106 1090 94 0 13 chr12 66301240 66301399 -77981090 + L1PA13 LINE L1 5963 6119 -44 22 0 0 0 chr12 66301625 66301647 -77980842 + AT_rich Low_complexity Low_complexity 1 22 0 2101 122 0 16 chr12 66301870 66302182 -77980307 - AluSq SINE Alu -6 307 1 246 156 0 0 chr12 66303301 66303346 -77979143 + (TA)n Simple_repeat Simple_repeat 2 46 0 351 0 0 0 chr12 66304029 66304068 -77978421 + (TG)n Simple_repeat Simple_repeat 2 40 0 332 281 68 13 chr12 66304900 66305026 -77977463 - L2 LINE L2 -12 3260 3169 339 262 93 9 chr12 66305237 66305344 -77977145 + L2 LINE L2 3149 3264 -8 3707 190 48 1 chr12 66305730 66306420 -77976069 + MER44D DNA MER2_type 3 596 -9 1117 305 67 25 chr12 66307006 66307672 -77974817 + L1M3d LINE L1 572 1073 -5580 236 314 57 0 chr12 66307702 66307772 -77974717 + L1M3d LINE L1 942 1015 -5638 * 332 286 76 25 chr12 66307766 66307885 -77974604 + L1MA7 LINE L1 1080 1204 -6282 3767 231 47 59 chr12 66307907 66309072 -77973417 + L1MA7 LINE L1 1768 2945 -4620 1968 127 4 0 chr12 66309072 66309369 -77973120 + AluSx SINE Alu 24 312 0 3767 231 47 59 chr12 66309369 66311196 -77971293 + L1MA7 LINE L1 2945 4865 -2700 1396 193 21 11 chr12 66311196 66311476 -77971013 - MSTB LTR MaLR -143 283 1 4767 206 45 26 chr12 66311479 66311813 -77970676 + L1MA7 LINE L1 5407 5733 -1977 1810 174 16 13 chr12 66311813 66312118 -77970371 - AluSx SINE Alu -6 306 1 4767 206 45 26 chr12 66312118 66313877 -77968612 + L1MA7 LINE L1 5733 7551 -159 961 191 12 0 chr12 66313877 66314039 -77968450 - FAM SINE Alu -11 164 1 4767 206 45 26 chr12 66314039 66314202 -77968287 + L1MA7 LINE L1 7551 7709 -1 207 231 31 0 chr12 66314234 66314299 -77968190 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 519 17 0 0 chr12 66315363 66315423 -77967066 + (CA)n Simple_repeat Simple_repeat 1 60 0 1317 217 90 42 chr12 66315461 66315894 -77966595 + MSTB2 LTR MaLR 3 456 -1 1586 183 48 3 chr12 66316208 66316330 -77966159 + AluJo SINE Alu 1 116 -196 195 42 0 0 chr12 66316330 66316354 -77966135 + (AAATG)n Simple_repeat Simple_repeat 2 25 0 1586 183 48 3 chr12 66316354 66316520 -77965969 + AluJo SINE Alu 116 302 -10 340 315 56 19 chr12 66319463 66319625 -77962864 - MLT1J2 LTR MaLR -16 434 267 210 183 42 0 chr12 66320106 66320177 -77962312 + (TA)n Simple_repeat Simple_repeat 1 74 0 264 262 111 87 chr12 66322382 66322432 -77960057 - MIR SINE MIR -70 192 145 320 23 0 0 chr12 66322432 66322475 -77960014 + L1PA8 LINE L1 6126 6168 -4 264 262 111 87 chr12 66322475 66322550 -77959939 - MIR SINE MIR -117 145 64 28 29 0 0 chr12 66322937 66322972 -77959517 + AT_rich Low_complexity Low_complexity 1 35 0 314 224 0 103 chr12 66323267 66323297 -77959192 + Tigger3(Golem) DNA MER2_type 13 44 -2985 1755 138 3 38 chr12 66323297 66323588 -77958901 + AluSx SINE Alu 15 295 -17 314 224 0 103 chr12 66323588 66323603 -77958886 + Tigger3(Golem) DNA MER2_type 44 59 -2970 243 0 0 0 chr12 66323603 66323630 -77958859 + (CA)n Simple_repeat Simple_repeat 2 28 0 314 224 0 103 chr12 66323630 66323690 -77958799 + Tigger3(Golem) DNA MER2_type 59 108 -2921 339 113 0 0 chr12 66323691 66323744 -77958745 + Tigger3(Golem) DNA MER2_type 2289 2341 -688 6111 59 2 25 chr12 66323752 66324601 -77957888 - L1PA7 LINE L1 -16 6138 5309 2651 103 50 24 chr12 66324601 66325105 -77957384 + Tigger3(Golem) DNA MER2_type 2331 2847 -182 2153 86 41 6 chr12 66325302 66325677 -77956812 - LTR7 LTR ERV1 -2 448 1 2724 99 14 11 chr12 66325677 66326113 -77956376 - HERVH LTR ERV1 0 7713 7277 7666 102 4 7 chr12 66326130 66328437 -77954052 - HERVH LTR ERV1 -1866 5225 2894 4049 184 23 49 chr12 66328433 66330750 -77951739 - HERVH LTR ERV1 -4551 1978 1 * 2100 84 42 6 chr12 66330758 66331127 -77951362 - LTR7 LTR ERV1 -8 442 1 1010 196 0 0 chr12 66331425 66331609 -77950880 + Tigger3(Golem) DNA MER2_type 2854 3037 0 186 103 0 0 chr12 66333606 66333635 -77948854 + (TG)n Simple_repeat Simple_repeat 1 29 0 233 229 0 0 chr12 66333926 66333974 -77948515 + A-rich Low_complexity Low_complexity 3 50 0 340 295 74 1 chr12 66334401 66334547 -77947942 - MIR SINE MIR -66 142 35 223 259 106 12 chr12 66334544 66334611 -77947878 + MIR SINE MIR 59 137 -125 * 195 42 0 0 chr12 66334611 66334635 -77947854 + (CA)n Simple_repeat Simple_repeat 1 24 0 223 259 106 12 chr12 66334635 66334652 -77947837 + MIR SINE MIR 137 151 -111 3796 96 2 12 chr12 66334676 66335056 -77947433 + MER41A LTR ERV1 1 375 -179 7880 58 15 3 chr12 66335056 66336051 -77946438 + LTR13 LTR ERVK 1 1007 0 3796 96 2 12 chr12 66336051 66336230 -77946259 + MER41A LTR ERV1 375 554 0 469 201 188 32 chr12 66336290 66336444 -77946045 - MER5A DNA MER1_type -1 188 11 222 145 0 48 chr12 66336840 66336902 -77945587 + (GAA)n Simple_repeat Simple_repeat 1 59 0 1072 200 32 69 chr12 66337296 66337622 -77944867 - MER67C LTR ERV1 -244 270 1 207 171 0 0 chr12 66340546 66340581 -77941908 + CT-rich Low_complexity Low_complexity 2 36 0 622 201 0 37 chr12 66340581 66340715 -77941774 - FLAM_A SINE Alu 0 142 14 1203 287 113 33 chr12 66340748 66341603 -77940886 + L2 LINE L2 2380 3313 0 21 57 0 0 chr12 66341904 66341939 -77940550 + AT_rich Low_complexity Low_complexity 1 35 0 2269 84 11 0 chr12 66341945 66342254 -77940235 + AluSg SINE Alu 1 312 0 292 247 37 25 chr12 66342476 66342557 -77939932 + L2 LINE L2 3171 3252 -20 23 97 0 0 chr12 66343025 66343097 -77939392 + AT_rich Low_complexity Low_complexity 1 72 0 1257 223 11 4 chr12 66343406 66343684 -77938805 - LTR51 LTR ERV1 -152 519 240 229 326 61 20 chr12 66343854 66343952 -77938537 - MER101B LTR ERV1 -458 112 11 1698 184 8 52 chr12 66344083 66344464 -77938025 - MLT1A1 LTR MaLR 0 365 2 1160 267 121 25 chr12 66344636 66345081 -77937408 - MER69 DNA AcHobo -2020 506 19 189 107 0 0 chr12 66346257 66346285 -77936204 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 749 146 0 8 chr12 66346498 66346628 -77935861 + L1PA16 LINE L1 6024 6152 -14 2160 110 37 0 chr12 66346671 66346970 -77935519 - AluSq SINE Alu -3 310 1 249 83 0 0 chr12 66347637 66347673 -77934816 + (GGAAA)n Simple_repeat Simple_repeat 5 40 0 21 71 0 0 chr12 66349782 66349824 -77932665 + AT_rich Low_complexity Low_complexity 1 42 0 431 267 90 55 chr12 66349912 66350167 -77932322 - L2 LINE L2 0 3313 3050 548 321 92 0 chr12 66350492 66350710 -77931779 - L2 LINE L2 -536 2778 2541 3579 157 3 7 chr12 66350712 66351324 -77931165 - MER4B LTR ERV1 0 610 1 219 313 54 9 chr12 66351481 66351593 -77930896 - L2 LINE L2 -745 2569 2453 419 377 42 50 chr12 66351643 66352001 -77930488 + L2 LINE L2 2907 3261 -11 1470 210 53 44 chr12 66352193 66352710 -77929779 - MER67C LTR ERV1 0 514 30 25 0 0 0 chr12 66353767 66353792 -77928697 + AT_rich Low_complexity Low_complexity 1 25 0 417 272 10 39 chr12 66353950 66354053 -77928436 + MER5A DNA MER1_type 11 110 -79 1378 228 40 19 chr12 66354236 66354609 -77927880 - MER89 LTR ERV1 0 559 179 229 276 0 51 chr12 66354733 66354831 -77927658 - MLT1J LTR MaLR -159 352 260 603 263 86 5 chr12 66355959 66356145 -77926344 - MIR SINE MIR -56 206 6 1832 166 7 14 chr12 66356192 66356488 -77926001 + AluJb SINE Alu 1 294 -18 437 181 11 0 chr12 66356481 66356575 -77925914 + GA-rich Low_complexity Low_complexity 2 96 0 421 354 44 22 chr12 66356953 66357224 -77925265 - L2 LINE L2 -515 2799 2523 794 341 36 10 chr12 66357224 66357532 -77924957 + L2 LINE L2 1692 2007 -1307 1159 224 128 37 chr12 66357853 66358281 -77924208 - MLT1C LTR MaLR 0 467 1 603 299 19 0 chr12 66358409 66358566 -77923923 + L2 LINE L2 2027 2186 -1128 546 314 143 17 chr12 66358566 66358923 -77923566 - L1MC4a LINE L1 -1901 5907 5506 28 86 0 0 chr12 66358925 66358995 -77923494 + AT_rich Low_complexity Low_complexity 1 70 0 309 224 35 0 chr12 66359290 66359375 -77923114 + L1MC5 LINE L1 7009 7096 -865 310 179 36 0 chr12 66359387 66359471 -77923018 + GA-rich Low_complexity Low_complexity 2 88 0 500 225 56 71 chr12 66359484 66359751 -77922738 + L1MC5 LINE L1 7273 7535 -426 1960 206 21 48 chr12 66361311 66361830 -77920659 - MLT1D LTR MaLR 0 505 1 2742 119 33 0 chr12 66361954 66362384 -77920105 + L1PA14 LINE L1 5716 6159 -2 613 314 147 21 chr12 66363792 66364222 -77918267 + MLT1J LTR MaLR 22 505 -6 411 353 78 12 chr12 66364592 66364759 -77917730 - MIR3 SINE MIR -15 193 16 261 303 28 55 chr12 66365916 66366061 -77916428 - L2 LINE L2 -189 3083 2943 466 306 102 48 chr12 66366183 66366575 -77915914 + L2 LINE L2 1295 1707 -1607 559 346 144 29 chr12 66367047 66367810 -77914679 + L2 LINE L2 1858 2708 -606 2083 113 0 30 chr12 66368544 66368844 -77913645 - AluSx SINE Alu -21 291 1 183 100 0 0 chr12 66368874 66368904 -77913585 + (TG)n Simple_repeat Simple_repeat 1 30 0 339 327 63 24 chr12 66369561 66369766 -77912723 + MIR SINE MIR 12 224 -38 290 275 160 15 chr12 66369832 66369963 -77912526 - MIR3 SINE MIR -9 199 50 727 217 71 33 chr12 66372087 66372427 -77910062 - MER31B LTR ERV1 0 466 1 276 278 0 41 chr12 66372711 66372808 -77909681 + MIR SINE MIR 29 121 -141 2425 196 65 47 chr12 66372814 66373373 -77909116 + LTR8 LTR ERV1 1 574 -117 1899 152 129 5 chr12 66373373 66373754 -77908735 + MSTA LTR MaLR 1 428 0 2425 196 65 47 chr12 66373754 66373812 -77908677 + LTR8 LTR ERV1 574 629 -62 208 203 232 0 chr12 66373812 66373881 -77908608 + MIR SINE MIR 152 236 -26 437 335 115 19 chr12 66374392 66374714 -77907775 + L2 LINE L2 2857 3209 -104 253 329 12 12 chr12 66375370 66375455 -77907034 - L2 LINE L2 -8 3264 3180 331 268 153 66 chr12 66375702 66375930 -77906559 + MLT1K LTR MaLR 94 341 -247 21 0 0 0 chr12 66376088 66376109 -77906380 + AT_rich Low_complexity Low_complexity 1 21 0 572 336 86 8 chr12 66376440 66376696 -77905793 + L3 LINE CR1 1218 1493 -84 6583 23 0 0 chr12 66376954 66377725 -77904764 - L1PA2 LINE L1 -1560 4586 3816 7630 23 2 2 chr12 66377725 66379302 -77903187 + L1PA2 LINE L1 4579 6155 0 469 313 7 7 chr12 66379696 66379846 -77902643 + MIR SINE MIR 2 151 -111 185 163 139 0 chr12 66380172 66380215 -77902274 + L2 LINE L2 3265 3313 0 364 315 0 0 chr12 66380460 66380552 -77901937 + L2 LINE L2 3136 3227 -45 * 713 349 12 18 chr12 66380541 66380879 -77901610 - L2 LINE L2 -513 2801 2466 37 23 0 0 chr12 66380879 66380923 -77901566 + AT_rich Low_complexity Low_complexity 1 44 0 1571 169 22 44 chr12 66381039 66381405 -77901084 - L1MA10 LINE L1 -1 6333 5976 411 383 16 16 chr12 66381899 66382142 -77900347 - MIR SINE MIR -15 247 5 867 290 14 69 chr12 66382148 66382496 -77899993 - MER102b DNA MER1_type -11 330 2 557 249 75 40 chr12 66382724 66382897 -77899592 - MER63A DNA MER1_type -3 207 29 498 274 135 19 chr12 66383188 66383396 -77899093 - MIR SINE MIR -1 261 30 23 33 0 0 chr12 66383722 66383752 -77898737 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 66384300 66384325 -77898164 + AT_rich Low_complexity Low_complexity 1 25 0 1964 125 10 7 chr12 66384971 66385260 -77897229 + AluSx SINE Alu 1 290 -22 320 295 108 8 chr12 66385364 66385493 -77896996 - L2 LINE L2 -4 3309 3168 243 61 0 0 chr12 66385758 66385791 -77896698 + (TG)n Simple_repeat Simple_repeat 2 34 0 303 302 45 120 chr12 66386432 66386766 -77895723 - L2 LINE L2 -9 3263 2955 2292 129 9 6 chr12 66387144 66387494 -77894995 - L1PA16 LINE L1 -2 6164 5814 574 129 43 0 chr12 66387674 66387767 -77894722 - L1PA16 LINE L1 -361 5805 5709 193 119 48 0 chr12 66387939 66387981 -77894508 + GA-rich Low_complexity Low_complexity 3 46 0 1835 140 46 27 chr12 66388258 66388586 -77893903 + THE1B LTR MaLR 1 334 -30 1892 88 8 0 chr12 66388590 66388852 -77893637 + THE1B-int LTR MaLR 1316 1579 -1 2402 126 22 0 chr12 66388853 66389209 -77893280 + THE1B LTR MaLR 1 364 0 789 325 82 20 chr12 66389639 66390042 -77892447 - LTR16C LTR ERVL -18 473 46 1930 110 43 20 chr12 66390295 66390595 -77891894 - AluSg SINE Alu -3 307 1 845 193 12 6 chr12 66390597 66390763 -77891726 - FRAM SINE Alu -12 164 1 491 297 47 78 chr12 66390785 66391169 -77891320 - MERVL LTR ERVL -2541 2944 2573 420 359 80 11 chr12 66391503 66391765 -77890724 - MERVL LTR ERVL -2912 2084 1805 1165 294 87 8 chr12 66392277 66392668 -77889821 - LTR16C LTR ERVL 0 491 70 2601 61 0 0 chr12 66392797 66393107 -77889382 - AluY SINE Alu -1 310 1 457 319 32 11 chr12 66393772 66393960 -77888529 - MIR SINE MIR -6 256 65 222 64 21 43 chr12 66394774 66394821 -77887668 + (TG)n Simple_repeat Simple_repeat 1 46 0 1051 282 113 7 chr12 66394832 66395399 -77887090 - L2 LINE L2 -125 3188 2553 180 366 0 0 chr12 66395439 66395510 -77886979 + MIR SINE MIR 75 145 -63 1454 185 41 31 chr12 66395789 66395925 -77886564 + AluJo SINE Alu 1 134 -178 2329 103 0 0 chr12 66395925 66396227 -77886262 + AluSx SINE Alu 1 302 -10 1454 185 41 31 chr12 66396227 66396382 -77886107 + AluJo SINE Alu 134 295 -17 763 351 62 25 chr12 66397268 66397880 -77884609 - L2 LINE L2 -968 2346 1712 198 0 0 0 chr12 66398372 66398394 -77884095 + (TG)n Simple_repeat Simple_repeat 2 23 0 759 115 0 0 chr12 66398537 66398641 -77883848 - MLT1C LTR MaLR -3 464 361 1577 162 7 35 chr12 66398657 66398941 -77883548 + AluJb SINE Alu 15 290 -22 216 0 0 0 chr12 66398949 66398973 -77883516 + (TA)n Simple_repeat Simple_repeat 2 25 0 201 39 0 0 chr12 66399104 66399130 -77883359 + (TA)n Simple_repeat Simple_repeat 2 27 0 1477 171 162 10 chr12 66399130 66399439 -77883050 - MLT1C LTR MaLR -109 358 3 280 272 112 36 chr12 66399534 66399839 -77882650 + HAL1 LINE L1 796 1123 -1384 630 249 96 39 chr12 66400102 66400173 -77882316 + MIR SINE MIR 21 87 -175 1910 144 3 7 chr12 66400173 66400632 -77881857 - AluSq SINE Alu 0 458 1 630 249 96 39 chr12 66400632 66400788 -77881701 + MIR SINE MIR 87 262 0 21 0 0 0 chr12 66400792 66400813 -77881676 + AT_rich Low_complexity Low_complexity 1 21 0 206 317 140 66 chr12 66400849 66401348 -77881141 - L2 LINE L2 -1970 1344 809 206 32 32 0 chr12 66401466 66401497 -77880992 + (TA)n Simple_repeat Simple_repeat 2 33 0 200 304 120 8 chr12 66401928 66402053 -77880436 - L2 LINE L2 -2568 746 608 700 194 56 19 chr12 66402129 66402289 -77880200 - FAM SINE Alu -6 169 4 184 268 146 57 chr12 66402420 66402543 -77879946 + MIR SINE MIR 57 190 -72 27 62 0 0 chr12 66403889 66403937 -77878552 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr12 66405207 66405228 -77877261 + AT_rich Low_complexity Low_complexity 1 21 0 304 315 54 76 chr12 66405534 66405676 -77876813 + MER5A DNA MER1_type 9 153 -36 221 57 29 0 chr12 66405676 66405711 -77876778 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1517 176 61 0 chr12 66405711 66405973 -77876516 - AluJo SINE Alu -32 280 3 304 315 54 76 chr12 66405973 66406013 -77876476 + MER5A DNA MER1_type 151 188 -1 307 326 122 35 chr12 66406039 66406269 -77876220 - MIR SINE MIR -11 251 2 379 314 106 43 chr12 66407308 66407724 -77874765 + L2 LINE L2 2562 3007 -265 237 65 0 0 chr12 66408139 66408170 -77874319 + (CA)n Simple_repeat Simple_repeat 2 32 0 507 282 167 6 chr12 66408304 66408478 -77874011 - MIR SINE MIR -30 232 31 5162 129 58 3 chr12 66408504 66409471 -77873018 + L1PA16 LINE L1 5141 6157 -9 378 207 37 12 chr12 66409514 66409596 -77872893 + MER5A DNA MER1_type 7 90 -99 574 274 74 0 chr12 66410509 66410684 -77871805 + MIR SINE MIR 50 237 -25 1713 173 51 3 chr12 66410695 66411031 -77871458 + MER46B DNA MER2_type 10 236 0 235 197 0 28 chr12 66411118 66411189 -77871300 + (TA)n Simple_repeat Simple_repeat 1 69 0 945 102 0 15 chr12 66411816 66411953 -77870536 - AluSp/q SINE Alu -5 308 174 190 267 224 0 chr12 66412747 66412863 -77869626 - MIR SINE MIR -26 236 95 349 318 159 5 chr12 66413284 66413479 -77869010 - L2 LINE L2 -560 2754 2530 401 369 147 0 chr12 66413521 66413746 -77868743 + MIR SINE MIR 1 258 -4 218 186 0 0 chr12 66413786 66413829 -77868660 - L2 LINE L2 -2 3311 3269 300 189 68 0 chr12 66413837 66413911 -77868578 + MIR3 SINE MIR 105 183 -25 460 294 71 16 chr12 66414503 66414687 -77867802 - MIR SINE MIR -12 250 57 6076 95 11 24 chr12 66414892 66415330 -77867159 - MER4D LTR ERV1 0 872 449 2001 138 57 0 chr12 66415330 66415648 -77866841 - MER1B DNA MER1_type 0 337 2 6076 95 11 24 chr12 66415648 66416092 -77866397 - MER4D LTR ERV1 -423 449 1 74 81 0 0 chr12 66416509 66416681 -77865808 + AT_rich Low_complexity Low_complexity 1 172 0 271 204 98 30 chr12 66416692 66416824 -77865665 - L1ME4a LINE L1 -219 5902 5762 240 35 0 0 chr12 66416893 66416922 -77865567 - MER4D LTR ERV1 0 872 844 * 2379 141 121 42 chr12 66416915 66417418 -77865071 - MER4B LTR ERV1 -67 543 1 185 366 86 0 chr12 66417529 66417622 -77864867 + MIR SINE MIR 54 154 -108 307 363 97 17 chr12 66417795 66418032 -77864457 - L1ME4a LINE L1 -2213 5595 5340 29 28 0 0 chr12 66418278 66418314 -77864175 + AT_rich Low_complexity Low_complexity 1 36 0 1763 164 3 7 chr12 66418314 66418600 -77863889 - AluSx SINE Alu -27 285 1 2349 84 0 3 chr12 66419229 66419526 -77862963 - AluY SINE Alu -15 296 1 3045 177 20 16 chr12 66419683 66420274 -77862215 + L1MB3 LINE L1 5536 6132 -51 2217 100 7 0 chr12 66420274 66420564 -77861925 + AluSq SINE Alu 1 292 -21 3045 177 20 16 chr12 66420564 66420616 -77861873 + L1MB3 LINE L1 6132 6182 -1 21 0 0 0 chr12 66420619 66420640 -77861849 + AT_rich Low_complexity Low_complexity 1 21 0 27 87 0 0 chr12 66420707 66420776 -77861713 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr12 66421949 66421970 -77860519 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr12 66422130 66422158 -77860331 + AT_rich Low_complexity Low_complexity 1 28 0 265 229 0 29 chr12 66422574 66422644 -77859845 + CT-rich Low_complexity Low_complexity 4 71 0 198 342 0 0 chr12 66422822 66422898 -77859591 + MIR SINE MIR 67 142 -66 2310 60 4 0 chr12 66423155 66423464 -77859025 + AluY SINE Alu 2 311 0 2794 59 5 43 chr12 66423464 66423856 -77858633 + L1PA7 LINE L1 5778 6154 0 322 129 32 75 chr12 66423908 66424001 -77858488 + MER53 DNA DNA 96 184 -5 * 346 177 38 0 chr12 66423936 66424015 -77858474 - MER53 DNA DNA -107 82 1 900 76 0 23 chr12 66424493 66424624 -77857865 - L1MA1 LINE L1 -4 6298 6171 219 36 0 0 chr12 66424754 66424782 -77857707 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1950 129 4 0 chr12 66424783 66425062 -77857427 - AluSx SINE Alu -32 280 1 1948 216 105 17 chr12 66426236 66426695 -77855794 - MLT1D LTR MaLR 0 505 7 185 236 28 123 chr12 66429543 66429649 -77852840 - MIR3 SINE MIR -98 110 15 21 36 0 0 chr12 66430153 66430181 -77852308 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr12 66430922 66430957 -77851532 + AT_rich Low_complexity Low_complexity 1 35 0 216 250 0 18 chr12 66431775 66431831 -77850658 + CT-rich Low_complexity Low_complexity 2 56 0 584 112 28 9 chr12 66431961 66432068 -77850421 - L1MA3 LINE L1 0 6305 6197 24 0 0 0 chr12 66432305 66432329 -77850160 + AT_rich Low_complexity Low_complexity 1 24 0 9927 203 14 31 chr12 66432347 66436399 -77846090 - L1PA13 LINE L1 -1 7600 2487 2274 124 0 0 chr12 66436399 66436706 -77845783 - AluSx SINE Alu -5 307 1 9927 203 14 31 chr12 66436706 66439099 -77843390 - L1PA13 LINE L1 -5114 2487 56 413 298 25 15 chr12 66439220 66439418 -77843071 - L1PA13 LINE L1 -7366 215 16 995 257 52 24 chr12 66439478 66439959 -77842530 - MLT1G LTR MaLR -33 557 2 261 167 0 0 chr12 66442066 66442120 -77840369 + (TG)n Simple_repeat Simple_repeat 2 55 0 24 67 0 0 chr12 66442313 66442358 -77840131 + AT_rich Low_complexity Low_complexity 1 45 0 1625 189 0 34 chr12 66443602 66443899 -77838590 + AluJo SINE Alu 1 287 -25 11225 28 4 0 chr12 66444302 66445678 -77836811 - L1P LINE L1 -2862 3284 1904 16029 38 0 14 chr12 66445678 66447655 -77834834 + L1PA3 LINE L1 3421 5377 -788 2762 19 0 0 chr12 66447655 66447963 -77834526 + AluYa5 SINE Alu 1 308 -3 16029 38 0 14 chr12 66447963 66448741 -77833748 + L1PA3 LINE L1 5377 6165 0 26 0 0 0 chr12 66448791 66448817 -77833672 + AT_rich Low_complexity Low_complexity 1 26 0 510 289 151 0 chr12 66449590 66449808 -77832681 + HAL1 LINE L1 5 255 -2252 231 312 200 6 chr12 66450020 66450190 -77832299 + HAL1 LINE L1 666 868 -1639 580 293 140 5 chr12 66450257 66450479 -77832010 - MIR SINE MIR -9 253 2 865 230 63 39 chr12 66450509 66451092 -77831397 + HAL1 LINE L1 946 1588 -919 1047 271 165 16 chr12 66451105 66451770 -77830719 + HAL1 LINE L1 1739 2502 -5 22 0 0 0 chr12 66451774 66451796 -77830693 + AT_rich Low_complexity Low_complexity 1 22 0 4251 121 33 1 chr12 66452709 66453380 -77829109 - L1PB3 LINE L1 -2 6209 5518 644 100 0 0 chr12 66453381 66453471 -77829018 + AluY SINE Alu 213 302 -9 7703 196 23 84 chr12 66453471 66454403 -77828086 - L1PB3 LINE L1 -681 5530 4543 2465 59 0 34 chr12 66454403 66454725 -77827764 - AluY SINE Alu 0 311 1 7703 196 23 84 chr12 66454725 66455741 -77826748 - L1PB3 LINE L1 -1668 4543 3467 2245 165 34 23 chr12 66455741 66456283 -77826206 + MLT2A2 LTR ERVL 1 554 0 7703 196 23 84 chr12 66456283 66458955 -77823534 - L1PB3 LINE L1 -2744 3467 908 315 257 14 0 chr12 66458958 66459028 -77823461 + LTR41 LTR ERVL 103 173 -600 218 215 0 15 chr12 66459747 66459812 -77822677 + (TATATG)n Simple_repeat Simple_repeat 4 67 0 6678 42 1 0 chr12 66460254 66461060 -77821429 - L1PA5 LINE L1 -5 6149 5343 3773 52 0 0 chr12 66461061 66461537 -77820952 + L1P LINE L1 4756 5231 -915 21 71 0 0 chr12 66461829 66461871 -77820618 + AT_rich Low_complexity Low_complexity 1 42 0 213 231 13 51 chr12 66461892 66461970 -77820519 + CT-rich Low_complexity Low_complexity 4 78 0 304 374 0 0 chr12 66463697 66463796 -77818693 - L2 LINE L2 -5 3308 3210 282 318 45 50 chr12 66463863 66464064 -77818425 + L2 LINE L2 3111 3310 -3 720 198 18 104 chr12 66464595 66464662 -77817827 + MLT1D LTR MaLR 8 79 -426 2066 159 9 24 chr12 66464662 66465001 -77817488 + MER1B DNA MER1_type 4 337 0 720 198 18 104 chr12 66465001 66465155 -77817334 + MLT1D LTR MaLR 79 210 -295 1962 161 33 25 chr12 66465157 66465518 -77816971 - THE1B LTR MaLR 0 364 1 4323 85 21 0 chr12 66465518 66466092 -77816397 - THE1B-int LTR MaLR 0 1580 995 506 266 58 26 chr12 66466093 66466247 -77816242 + L2 LINE L2 3108 3266 -6 2663 39 0 0 chr12 66466859 66467165 -77815324 + AluY SINE Alu 1 306 -5 183 359 19 39 chr12 66467404 66467507 -77814982 + L2 LINE L2 2953 3053 -219 30 59 0 0 chr12 66468357 66468408 -77814081 + AT_rich Low_complexity Low_complexity 1 51 0 296 296 67 40 chr12 66468436 66468811 -77813678 + L1M4 LINE L1 4615 4999 -1147 325 300 42 46 chr12 66469019 66469261 -77813228 - L1ME4a LINE L1 -183 5938 5696 276 77 0 0 chr12 66469261 66469300 -77813189 + (TG)n Simple_repeat Simple_repeat 2 40 0 325 300 42 46 chr12 66469300 66469320 -77813169 - L1ME4a LINE L1 -425 5696 5677 307 334 31 5 chr12 66469334 66469521 -77812968 - L1ME4a LINE L1 -566 5555 5365 672 196 8 23 chr12 66470067 66470200 -77812289 - FRAM SINE Alu -45 131 1 192 111 0 0 chr12 66471616 66471652 -77810837 + (T)n Simple_repeat Simple_repeat 1 36 0 1880 26 4 4 chr12 66471674 66471905 -77810584 - L1PA3 LINE L1 -1 6154 5924 32 43 0 0 chr12 66472663 66472709 -77809780 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr12 66473626 66473651 -77808838 + AT_rich Low_complexity Low_complexity 1 25 0 1900 169 18 121 chr12 66475102 66475575 -77806914 - MER41B LTR ERV1 -34 601 190 2155 118 0 7 chr12 66475575 66475879 -77806610 - AluSg1 SINE Alu -7 302 1 1900 169 18 121 chr12 66475879 66475949 -77806540 - MER41B LTR ERV1 -445 190 114 1712 122 118 0 chr12 66476021 66476292 -77806197 + AluSx SINE Alu 1 303 -9 990 273 180 29 chr12 66476365 66477040 -77805449 + L2 LINE L2 2516 3292 -21 377 259 17 0 chr12 66477174 66477266 -77805223 - AluJ/FLAM SINE Alu -223 79 1 235 278 314 11 chr12 66477417 66477608 -77804881 - MIR SINE MIR -8 254 6 250 252 78 26 chr12 66478154 66478175 -77804314 - L1MA10 LINE L1 -2 6332 6312 616 250 134 5 chr12 66478175 66478391 -77804098 - L1ME2 LINE L1 -12 6152 5909 335 156 58 57 chr12 66478391 66478491 -77803998 + MLT1A2 LTR MaLR 1 71 -303 696 256 0 0 chr12 66478502 66478658 -77803831 - L1ME2 LINE L1 -574 5588 5433 437 292 22 15 chr12 66478877 66479014 -77803475 + MIR SINE MIR 49 186 -76 220 289 15 111 chr12 66479033 66479168 -77803321 - MIR SINE MIR -11 251 130 243 93 116 0 chr12 66479169 66479212 -77803277 - MLT2D LTR ERVL 0 414 367 236 185 19 0 chr12 66479212 66479266 -77803223 + (TG)n Simple_repeat Simple_repeat 1 55 0 7570 27 5 0 chr12 66479380 66480510 -77801979 + L1PA3 LINE L1 5014 6150 -5 11827 110 12 6 chr12 66480732 66482520 -77799969 + L1P LINE L1 82 1881 -4265 26 0 0 0 chr12 66482735 66482761 -77799728 + AT_rich Low_complexity Low_complexity 1 26 0 384 320 39 22 chr12 66483146 66483324 -77799165 + MIR SINE MIR 81 261 -1 3198 43 13 0 chr12 66483745 66484141 -77798348 - L1PA3 LINE L1 -1 6154 5754 1195 180 98 133 chr12 66485323 66485701 -77796788 + MLT1C LTR MaLR 1 364 -103 2040 150 3 0 chr12 66485701 66486007 -77796482 - AluSq SINE Alu -6 307 1 1195 180 98 133 chr12 66486007 66486055 -77796434 + MLT1C LTR MaLR 364 412 -55 21 0 0 0 chr12 66487087 66487108 -77795381 + AT_rich Low_complexity Low_complexity 1 21 0 3041 166 152 7 chr12 66487935 66488515 -77793974 - MER52A LTR ERV1 0 1755 1092 373 350 65 84 chr12 66489555 66489661 -77792828 - L2 LINE L2 -430 2884 2777 3967 118 13 18 chr12 66489661 66490264 -77792225 + LTR43 LTR ERV1 1 600 -2 373 350 65 84 chr12 66490264 66491101 -77791388 - L2 LINE L2 -537 2777 1959 207 152 0 0 chr12 66491593 66491639 -77790850 + G-rich Low_complexity Low_complexity 1 46 0 17309 46 1 1 chr12 66491709 66493915 -77788574 - L1P LINE L1 -2418 3728 1523 8232 189 21 12 chr12 66494015 66496229 -77786260 + L1P4 LINE L1 3544 5777 -384 336 324 18 0 chr12 66497226 66497337 -77785152 - MIR3 SINE MIR -5 203 91 14314 77 8 5 chr12 66498925 66500883 -77781606 - L1P LINE L1 -4169 1977 13 301 294 7 49 chr12 66501121 66501264 -77781225 + L1MC4 LINE L1 6567 6703 -1339 211 182 0 0 chr12 66501265 66501298 -77781191 + (CA)n Simple_repeat Simple_repeat 1 33 0 794 235 16 6 chr12 66501388 66501571 -77780918 + MER5A DNA MER1_type 4 188 -1 1038 146 6 0 chr12 66501702 66501860 -77780629 + AluSg/x SINE Alu 138 296 -16 3668 186 54 29 chr12 66501860 66502659 -77779830 - L1MA10 LINE L1 -46 6288 5470 2408 122 6 0 chr12 66502665 66503018 -77779471 + THE1A LTR MaLR 1 355 0 6202 108 11 8 chr12 66503018 66503917 -77778572 + THE1A-int LTR MaLR 1 902 -678 625 94 0 12 chr12 66504018 66504103 -77778386 - L1P LINE L1 -6048 98 15 753 238 40 8 chr12 66504920 66505114 -77777375 + L1ME1 LINE L1 5491 5683 -483 3023 143 28 7 chr12 66505122 66505667 -77776822 - L1MA8 LINE L1 0 6291 5736 306 165 51 13 chr12 66505667 66505746 -77776743 - L1MA10 LINE L1 -942 5349 5268 * 829 251 84 62 chr12 66505741 66505977 -77776512 + L1ME1 LINE L1 5665 5894 -272 2160 129 0 3 chr12 66505977 66506286 -77776203 + AluSx SINE Alu 1 308 -4 829 251 84 62 chr12 66506286 66506534 -77775955 + L1ME1 LINE L1 5894 6160 -6 222 386 0 0 chr12 66506664 66506734 -77775755 - L2 LINE L2 -685 2629 2560 309 135 0 0 chr12 66507190 66507242 -77775247 + (TA)n Simple_repeat Simple_repeat 1 52 0 29136 45 3 1 chr12 66507851 66512220 -77770269 - L1PA3 LINE L1 -15 6140 1764 193 339 127 17 chr12 66512574 66512810 -77769679 + L2 LINE L2 2596 2857 -457 3128 153 34 4 chr12 66512971 66513532 -77768957 + L1PA16 LINE L1 5587 6164 -2 30 0 0 0 chr12 66513852 66513882 -77768607 + AT_rich Low_complexity Low_complexity 1 30 0 2738 87 58 12 chr12 66514330 66514757 -77767732 - L1MA1 LINE L1 -5 6297 5851 1571 118 65 0 chr12 66514939 66515202 -77767287 - L1MA5A LINE L1 0 6297 6018 2746 7 0 0 chr12 66515368 66515665 -77766824 - AluYa5 SINE Alu -14 297 1 23 0 0 0 chr12 66515866 66515889 -77766600 + AT_rich Low_complexity Low_complexity 1 23 0 274 339 11 9 chr12 66516702 66516810 -77765679 - MIR SINE MIR -86 122 8 7545 186 33 84 chr12 66517040 66518758 -77763731 + L1 LINE L1 14 1643 -5922 6772 181 37 14 chr12 66518756 66520166 -77762323 + L1 LINE L1 4733 6175 -1390 * 2840 139 2 2 chr12 66520156 66520610 -77761879 - L1MA2 LINE L1 -387 5917 5464 * 2221 112 56 0 chr12 66520610 66520981 -77761508 + L1MA2 LINE L1 5910 6304 0 32 67 0 0 chr12 66521342 66521402 -77761087 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr12 66521587 66521608 -77760881 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr12 66521689 66521721 -77760768 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr12 66523046 66523072 -77759417 + AT_rich Low_complexity Low_complexity 1 26 0 1500 83 9 28 chr12 66523194 66523411 -77759078 - AluSq SINE Alu -14 299 87 25 75 0 0 chr12 66524186 66524239 -77758250 + AT_rich Low_complexity Low_complexity 1 53 0 3081 172 30 11 chr12 66524521 66525092 -77757397 - MER67C LTR ERV1 -126 584 3 183 80 0 0 chr12 66525097 66525122 -77757367 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 29 84 0 0 chr12 66525133 66525204 -77757285 + AT_rich Low_complexity Low_complexity 1 71 0 226 254 30 0 chr12 66525321 66525388 -77757101 + L2 LINE L2 3203 3271 -1 21 0 0 0 chr12 66525657 66525678 -77756811 + AT_rich Low_complexity Low_complexity 1 21 0 2658 177 56 6 chr12 66526280 66526817 -77755672 + MER34B LTR ERV1 1 564 -1 257 284 14 50 chr12 66526991 66527132 -77755357 + CT-rich Low_complexity Low_complexity 3 138 0 458 119 12 0 chr12 66527351 66527435 -77755054 + (GA)n Simple_repeat Simple_repeat 2 86 0 277 313 134 14 chr12 66527486 66527777 -77754712 + L1ME LINE L1 5492 5817 -304 192 158 0 0 chr12 66527891 66527929 -77754560 + (TATG)n Simple_repeat Simple_repeat 2 39 0 366 330 57 22 chr12 66528204 66528431 -77754058 - LTR16C LTR ERVL 0 491 257 2849 325 68 64 chr12 66528948 66531201 -77751288 - ERVL LTR ERVL -1250 4514 2254 497 211 201 21 chr12 66533864 66534058 -77748431 + LTR41 LTR ERVL 1 229 -544 421 251 84 42 chr12 66534505 66534720 -77747769 + LTR41 LTR ERVL 544 767 -6 24 32 0 0 chr12 66534884 66534915 -77747574 + AT_rich Low_complexity Low_complexity 1 31 0 2248 119 0 0 chr12 66535924 66536227 -77746262 + AluSq SINE Alu 1 303 -10 266 211 0 0 chr12 66536378 66536435 -77746054 + (CA)n Simple_repeat Simple_repeat 2 58 0 496 274 22 34 chr12 66536591 66536770 -77745719 + MER5B DNA MER1_type 1 177 -1 352 256 143 75 chr12 66536937 66537203 -77745286 - L2 LINE L2 -6 3307 3024 476 176 55 0 chr12 66537345 66537436 -77745053 - MLT2D LTR ERVL -318 96 1 183 367 50 33 chr12 66537436 66537556 -77744933 - MIR SINE MIR -129 133 12 399 187 66 0 chr12 66538006 66538097 -77744392 + L1MEc LINE L1 31 127 -6269 1747 334 70 37 chr12 66538108 66538982 -77743507 + L1MEc LINE L1 278 1180 -5216 578 258 106 20 chr12 66538984 66539182 -77743307 - MIR SINE MIR -29 233 19 26 30 0 0 chr12 66539490 66539523 -77742966 + AT_rich Low_complexity Low_complexity 1 33 0 327 312 68 17 chr12 66539667 66539904 -77742585 - L1ME LINE L1 -502 5668 5420 4632 72 14 2 chr12 66540212 66540839 -77741650 + L1P LINE L1 12 646 -5500 4297 105 20 14 chr12 66541131 66541787 -77740702 + THE1A-int LTR MaLR 921 1580 0 2467 105 8 0 chr12 66541787 66542139 -77740350 + THE1A LTR MaLR 1 355 0 2758 186 13 23 chr12 66542140 66542857 -77739632 - L1M3 LINE L1 -692 5476 4769 1862 221 39 33 chr12 66542852 66543368 -77739121 + L1 LINE L1 4004 4522 -1624 * 1289 185 59 53 chr12 66543370 66543727 -77738762 + MER67A LTR ERV1 185 543 0 27605 44 4 5 chr12 66544319 66548573 -77733916 - L1PA5 LINE L1 -6 6148 1901 1341 186 19 30 chr12 66548674 66548937 -77733552 - AluJo SINE Alu -39 273 14 26 0 0 0 chr12 66550435 66550461 -77732028 + AT_rich Low_complexity Low_complexity 1 26 0 23 97 0 0 chr12 66551129 66551201 -77731288 + AT_rich Low_complexity Low_complexity 1 72 0 315 257 35 62 chr12 66551542 66551655 -77730834 + MER5B DNA MER1_type 21 130 -48 545 190 26 0 chr12 66552027 66552143 -77730346 - L1MC5 LINE L1 -860 7101 6983 228 284 76 65 chr12 66553138 66553479 -77729010 - L1ME4a LINE L1 -108 6013 5669 566 297 73 16 chr12 66553670 66553916 -77728573 + MIR SINE MIR 2 261 -1 193 287 82 74 chr12 66554131 66554253 -77728236 - L2 LINE L2 0 3313 3191 23 0 0 0 chr12 66555248 66555271 -77727218 + AT_rich Low_complexity Low_complexity 1 23 0 336 127 0 0 chr12 66555411 66555466 -77727023 + (TTTCC)n Simple_repeat Simple_repeat 1 55 0 1634 176 17 20 chr12 66555467 66555763 -77726726 - AluSx SINE Alu -11 301 7 1771 176 0 3 chr12 66556567 66556868 -77725621 + AluSx SINE Alu 1 300 -12 219 245 20 0 chr12 66557037 66557086 -77725403 + L2 LINE L2 3184 3233 -39 228 170 43 0 chr12 66557251 66557298 -77725191 - L2 LINE L2 0 3313 3265 232 224 121 43 chr12 66557350 66557466 -77725023 + L1ME3A LINE L1 4639 4763 -1383 410 297 0 27 chr12 66557771 66557882 -77724607 - AluSp SINE Alu -194 109 2 425 323 89 4 chr12 66557901 66558170 -77724319 + L1ME3A LINE L1 4783 5074 -1072 903 285 26 36 chr12 66558183 66558572 -77723917 + L1ME3A LINE L1 5764 6148 -22 22 0 0 0 chr12 66558951 66558973 -77723516 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr12 66559433 66559470 -77723019 + (CA)n Simple_repeat Simple_repeat 1 37 0 28 79 0 0 chr12 66559514 66559577 -77722912 + AT_rich Low_complexity Low_complexity 1 63 0 28 0 0 0 chr12 66560712 66560740 -77721749 + AT_rich Low_complexity Low_complexity 1 28 0 896 219 0 0 chr12 66560761 66560916 -77721573 - FRAM SINE Alu -21 155 1 4972 139 30 6 chr12 66561286 66562156 -77720333 + L1MC1 LINE L1 5442 6332 -1 2328 93 0 0 chr12 66563440 66563741 -77718748 + AluSq SINE Alu 1 301 -12 233 281 158 18 chr12 66563986 66564100 -77718389 + MIR SINE MIR 120 249 -13 622 222 30 12 chr12 66566338 66566505 -77715984 - MER3 DNA MER1_type -86 123 1 410 252 101 0 chr12 66566809 66566928 -77715561 - L1ME LINE L1 -406 5764 5634 259 362 95 0 chr12 66566928 66567028 -77715461 + L2 LINE L2 2899 3013 -300 240 111 0 0 chr12 66567028 66567064 -77715425 + (TTA)n Simple_repeat Simple_repeat 1 36 0 259 362 95 0 chr12 66567064 66567079 -77715410 + L2 LINE L2 3013 3025 -288 1618 141 182 22 chr12 66567090 66567459 -77715030 + MSTA LTR MaLR 1 428 0 7748 163 19 86 chr12 66567461 66569152 -77713337 + MSTA-int LTR MaLR 3 1580 0 1918 116 128 28 chr12 66569152 66569541 -77712948 + MSTA LTR MaLR 1 428 0 356 185 109 59 chr12 66569618 66569737 -77712752 + L2 LINE L2 3118 3242 -71 285 353 146 25 chr12 66569787 66570268 -77712221 + L2 LINE L2 2665 3217 -96 1053 269 77 81 chr12 66571146 66572077 -77710412 + L1MEc LINE L1 1475 2402 -3994 278 193 48 36 chr12 66572075 66572158 -77710331 + L1MC5 LINE L1 7844 7927 -34 * 268 296 163 23 chr12 66573104 66573276 -77709213 - MER117 DNA MER1_type -1 196 1 22 0 0 0 chr12 66573952 66573974 -77708515 + AT_rich Low_complexity Low_complexity 1 22 0 276 285 283 50 chr12 66574052 66574448 -77708041 - L2 LINE L2 -8 3305 2818 198 0 0 0 chr12 66574828 66574850 -77707639 + (T)n Simple_repeat Simple_repeat 1 22 0 263 290 196 9 chr12 66574891 66574998 -77707491 + L2 LINE L2 3145 3271 -1 397 278 30 142 chr12 66575287 66575618 -77706871 + L2 LINE L2 3020 3313 0 2015 83 0 0 chr12 66575782 66576036 -77706453 - AluSq SINE Alu -36 277 24 187 355 58 19 chr12 66577898 66578053 -77704436 + L2 LINE L2 2148 2308 -1006 328 325 57 25 chr12 66578844 66579001 -77703488 + MIR SINE MIR 57 218 -44 234 237 111 67 chr12 66579047 66579182 -77703307 - L2 LINE L2 -18 3295 3155 324 282 67 0 chr12 66579509 66579524 -77702965 - L1MA10 LINE L1 -1 6333 6319 2059 252 91 38 chr12 66579524 66580654 -77701835 - L1ME1 LINE L1 -9 6157 4968 426 343 179 19 chr12 66581301 66581721 -77700768 + L3 LINE CR1 1086 1572 -5 1759 10 0 0 chr12 66581823 66582023 -77700466 - L1P1 LINE L1 -580 5575 5376 10872 30 1 0 chr12 66582023 66583336 -77699153 + L1P1 LINE L1 4058 5371 -775 23 97 0 0 chr12 66583419 66583491 -77698998 + AT_rich Low_complexity Low_complexity 1 72 0 2236 158 58 19 chr12 66584332 66584744 -77697745 + MSTA LTR MaLR 1 428 0 264 132 13 26 chr12 66585248 66585324 -77697165 + (TA)n Simple_repeat Simple_repeat 2 76 0 301 306 0 10 chr12 66585556 66585654 -77696835 - L1MEc LINE L1 -6262 134 38 246 354 12 37 chr12 66585716 66585763 -77696726 + L2 LINE L2 1805 1852 -1462 1517 128 0 13 chr12 66585763 66585990 -77696499 - AluSg/x SINE Alu -4 305 82 246 354 12 37 chr12 66585990 66586106 -77696383 + L2 LINE L2 1852 1964 -1350 469 351 161 27 chr12 66586306 66586828 -77695661 + L2 LINE L2 2252 2843 -471 265 371 122 45 chr12 66586998 66587243 -77695246 + L2 LINE L2 3009 3272 0 929 271 114 40 chr12 66587547 66588291 -77694198 - L1MEc LINE L1 -4724 1672 874 30 27 0 0 chr12 66588900 66588937 -77693552 + AT_rich Low_complexity Low_complexity 1 37 0 803 237 19 47 chr12 66590158 66590373 -77692116 - MER20 DNA MER1_type 0 219 11 385 373 17 21 chr12 66590499 66590735 -77691754 - L1MEc LINE L1 -5867 529 295 1769 156 9 41 chr12 66591325 66591645 -77690844 - AluSq SINE Alu -3 310 1 963 214 55 45 chr12 66591853 66592161 -77690328 - PABL_B LTR ERV1 -11 656 346 380 308 31 41 chr12 66592186 66592381 -77690108 - PABL_B LTR ERV1 -474 193 1 791 175 0 0 chr12 66592448 66592574 -77689915 - FLAM_C SINE Alu -7 126 1 2173 129 41 14 chr12 66592816 66593181 -77689308 + THE1C LTR MaLR 1 375 0 3556 124 74 79 chr12 66593181 66593868 -77688621 + THE1C-int LTR MaLR 1 684 -896 2447 113 3 30 chr12 66593867 66594239 -77688250 + THE1C-int LTR MaLR 1219 1580 0 * 1192 143 37 0 chr12 66594239 66594428 -77688061 + THE1C LTR MaLR 1 196 -179 1978 195 51 7 chr12 66594599 66595009 -77687480 + MSTA LTR MaLR 1 428 0 236 352 112 54 chr12 66595123 66595720 -77686769 + L2 LINE L2 2286 2917 -397 529 284 26 58 chr12 66596232 66596376 -77686113 - MIR SINE MIR -27 235 97 1312 184 10 126 chr12 66596376 66596789 -77685700 + MLT1A1 LTR MaLR 1 365 0 529 284 26 58 chr12 66596789 66596834 -77685655 - MIR SINE MIR -165 97 52 24 0 0 0 chr12 66597437 66597461 -77685028 + AT_rich Low_complexity Low_complexity 1 24 0 740 262 68 69 chr12 66597911 66598377 -77684112 + MLT1D LTR MaLR 16 467 0 291 304 27 9 chr12 66598664 66598776 -77683713 - L3b LINE CR1 -340 1243 1130 528 284 91 69 chr12 66599607 66600399 -77682090 + HAL1 LINE L1 790 1598 -909 203 339 16 0 chr12 66600598 66600660 -77681829 - MIR SINE MIR -189 73 11 264 324 43 36 chr12 66601022 66601161 -77681328 - MIR SINE MIR -108 154 15 234 0 0 0 chr12 66603968 66603994 -77678495 + (TG)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chr12 66604232 66604254 -77678235 + (TGAA)n Simple_repeat Simple_repeat 4 25 0 1510 281 20 68 chr12 66604849 66605477 -77677012 + L2 LINE L2 2304 2900 -414 1732 33 5 0 chr12 66605477 66605692 -77676797 + L1PA4 LINE L1 5940 6155 0 1510 281 20 68 chr12 66605692 66605721 -77676768 + L2 LINE L2 2900 2929 -385 424 249 143 59 chr12 66605741 66605978 -77676511 + L2 LINE L2 3052 3308 -5 734 316 108 0 chr12 66606578 66606866 -77675623 - L1MEc LINE L1 -6041 355 37 1141 221 116 18 chr12 66608802 66609252 -77673237 + MLT1E1 LTR MaLR 1 558 -96 25 31 0 0 chr12 66609325 66609357 -77673132 + AT_rich Low_complexity Low_complexity 1 32 0 1913 25 8 4 chr12 66609379 66609614 -77672875 + L1HS LINE L1 5915 6150 -5 2067 123 16 3 chr12 66609683 66609991 -77672498 - AluSx SINE Alu 0 312 1 702 227 72 41 chr12 66610548 66610742 -77671747 - MER20 DNA MER1_type -1 218 19 636 245 14 106 chr12 66610850 66611042 -77671447 - L2 LINE L2 0 3313 3154 1780 159 3 22 chr12 66611042 66611356 -77671133 + AluJo SINE Alu 1 308 -4 636 245 14 106 chr12 66611356 66611445 -77671044 - L2 LINE L2 -159 3154 3058 188 195 49 0 chr12 66611527 66611568 -77670921 + L2 LINE L2 3256 3298 -15 404 350 36 14 chr12 66611573 66611713 -77670776 - L2 LINE L2 -5 3267 3125 357 381 122 25 chr12 66612020 66612456 -77670033 - L2 LINE L2 -539 2775 2298 758 232 16 121 chr12 66612525 66612840 -77669649 - MLT1A1 LTR MaLR -80 285 4 1852 150 3 29 chr12 66614948 66615262 -77667227 + AluJo SINE Alu 3 308 -4 614 216 154 0 chr12 66615518 66615680 -77666809 + MER3 DNA MER1_type 3 189 -20 473 314 49 49 chr12 66615839 66616084 -77666405 - MIR SINE MIR 0 262 18 238 235 118 15 chr12 66616153 66616221 -77666268 - HAL1 LINE L1 -1637 870 796 21 71 0 0 chr12 66616692 66616734 -77665755 + AT_rich Low_complexity Low_complexity 1 42 0 337 248 68 0 chr12 66617150 66617267 -77665222 - L1M4 LINE L1 -3804 2342 2218 262 263 18 88 chr12 66617392 66617506 -77664983 - L2 LINE L2 -427 2887 2782 1429 197 122 30 chr12 66617710 66618162 -77664327 + MER89 LTR ERV1 3 559 0 236 247 49 25 chr12 66618330 66618411 -77664078 - L1MEc LINE L1 -3388 2827 2745 2276 60 23 3 chr12 66618411 66618712 -77663777 + AluY SINE Alu 1 307 -4 672 258 126 0 chr12 66618841 66618881 -77663608 - MER58A DNA MER1_type -2197 223 189 768 156 25 19 chr12 66618881 66619041 -77663448 - L1MB8 LINE L1 0 6178 6018 672 258 126 0 chr12 66619041 66619198 -77663291 - MER58A DNA MER1_type -2231 189 1 313 362 104 7 chr12 66619214 66619512 -77662977 - L1MEc LINE L1 -3630 2585 2259 251 351 52 0 chr12 66619720 66619874 -77662615 - L1MEc LINE L1 -4672 1724 1563 742 311 60 18 chr12 66619930 66620312 -77662177 - HAL1 LINE L1 -411 2096 1699 1519 246 51 9 chr12 66620408 66620842 -77661647 - L1MC4a LINE L1 -1191 6617 6166 209 136 0 23 chr12 66620883 66620927 -77661562 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 21 57 0 0 chr12 66621965 66622000 -77660489 + AT_rich Low_complexity Low_complexity 1 35 0 1306 78 10 1 chr12 66622472 66622652 -77659837 - LTR12 LTR ERV1 -59 655 142 314 207 12 12 chr12 66622657 66622739 -77659750 - AluSp/q SINE Alu 0 303 222 21 0 0 0 chr12 66672740 66672761 -77609728 + AT_rich Low_complexity Low_complexity 1 21 0 798 269 160 32 chr12 66672798 66673236 -77609253 - L1ME LINE L1 -408 5758 5265 2079 141 35 22 chr12 66673257 66673627 -77608862 + THE1C LTR MaLR 1 375 0 6303 135 49 7 chr12 66673628 66674640 -77607849 + THE1C-int LTR MaLR 2 1056 -524 2113 77 11 3 chr12 66674930 66675216 -77607273 - AluSg SINE Alu -17 293 6 2138 120 3 0 chr12 66676018 66676319 -77606170 - AluSg SINE Alu -8 302 1 243 0 0 0 chr12 66676631 66676658 -77605831 + (CA)n Simple_repeat Simple_repeat 2 28 0 237 169 123 0 chr12 66676658 66676723 -77605766 - L1MC4 LINE L1 -1346 6696 6624 236 135 0 19 chr12 66677214 66677266 -77605223 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 22 56 0 0 chr12 66677596 66677632 -77604857 + AT_rich Low_complexity Low_complexity 1 36 0 207 295 66 0 chr12 66678511 66678572 -77603917 + L2 LINE L2 3168 3232 -40 261 203 0 16 chr12 66678730 66678794 -77603695 + (TAAA)n Simple_repeat Simple_repeat 1 63 0 337 217 83 33 chr12 66679094 66679214 -77603275 - MER106A DNA MER1_type 0 236 111 435 83 0 0 chr12 66680171 66680231 -77602258 + (TCCC)n Simple_repeat Simple_repeat 1 60 0 1909 248 213 43 chr12 66680445 66680923 -77601566 + L1MC4 LINE L1 6495 6891 -1151 1839 107 33 11 chr12 66680923 66681193 -77601296 + AluSx SINE Alu 1 276 -36 1909 248 213 43 chr12 66681193 66681208 -77601281 + L1MC4 LINE L1 6891 6902 -1140 234 0 0 0 chr12 66681208 66681234 -77601255 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1909 248 213 43 chr12 66681234 66681947 -77600542 + L1MC4 LINE L1 6902 7907 -135 5851 213 20 5 chr12 66682851 66684218 -77598271 + L1P LINE L1 2514 3901 -2245 23 0 0 0 chr12 66684658 66684681 -77597808 + AT_rich Low_complexity Low_complexity 1 23 0 562 269 41 59 chr12 66684914 66685185 -77597304 - L2 LINE L2 0 3313 3048 260 274 39 88 chr12 66685272 66685374 -77597115 - MIR SINE MIR -80 128 32 1866 119 0 0 chr12 66686863 66687124 -77595365 + AluSq SINE Alu 35 295 -18 301 17 68 17 chr12 66687125 66687184 -77595305 + (TA)n Simple_repeat Simple_repeat 1 62 0 377 255 10 20 chr12 66687338 66687440 -77595049 - MIR3 SINE MIR -3 205 105 1112 261 51 24 chr12 66687486 66688063 -77594426 + MLT1E1 LTR MaLR 4 593 0 22 0 0 0 chr12 66689152 66689174 -77593315 + AT_rich Low_complexity Low_complexity 1 22 0 297 235 42 130 chr12 66689187 66689218 -77593271 - L1MEc LINE L1 -4048 2348 2316 207 0 0 0 chr12 66689218 66689241 -77593248 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1858 127 48 0 chr12 66689242 66689510 -77592979 - AluSq SINE Alu -32 281 1 297 235 42 130 chr12 66689510 66689643 -77592846 - L1MEc LINE L1 -4080 2316 2207 830 94 0 8 chr12 66689643 66689770 -77592719 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 297 235 42 130 chr12 66689770 66689840 -77592649 - L1MEc LINE L1 -4189 2207 2132 314 289 111 33 chr12 66690026 66690206 -77592283 + MIR SINE MIR 59 252 -10 249 264 103 0 chr12 66690558 66690645 -77591844 - LTR16C LTR ERVL -19 472 377 353 145 56 4 chr12 66690792 66690913 -77591576 + MER53 DNA DNA 1 176 -13 327 301 70 28 chr12 66691210 66691353 -77591136 - MIR SINE MIR -102 160 12 526 294 32 23 chr12 66692412 66692587 -77589902 + MER63A DNA MER1_type 27 204 -6 421 254 101 14 chr12 66692726 66692864 -77589625 - MIR SINE MIR -27 235 86 1774 135 30 7 chr12 66693057 66693353 -77589136 + THE1C-int LTR MaLR 1278 1580 0 2101 140 30 24 chr12 66693353 66693725 -77588764 + THE1C LTR MaLR 1 374 -1 1613 241 82 43 chr12 66693727 66694608 -77587881 - L1M4 LINE L1 -901 5245 4331 363 288 122 5 chr12 66694634 66694856 -77587633 - L1MEc LINE L1 -3695 2520 2273 256 258 244 0 chr12 66694952 66695161 -77587328 - L1MEc LINE L1 -4159 2237 1978 331 316 75 44 chr12 66695337 66695461 -77587028 - L1MEc LINE L1 -4639 1757 1638 212 0 36 0 chr12 66695461 66695489 -77587000 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 331 316 75 44 chr12 66695489 66696183 -77586306 - L1MEc LINE L1 -4758 1638 903 591 217 16 0 chr12 66696183 66696312 -77586177 - L1PB4 LINE L1 -7 6149 6019 331 316 75 44 chr12 66696312 66696432 -77586057 - L1MEc LINE L1 -5493 903 788 26 0 0 0 chr12 66696706 66696732 -77585757 + AT_rich Low_complexity Low_complexity 1 26 0 295 388 52 17 chr12 66696766 66697057 -77585432 - L1MEc LINE L1 -5963 433 133 1175 195 28 5 chr12 66697143 66697358 -77585131 - AluJb SINE Alu -90 222 3 491 339 70 63 chr12 66697556 66697998 -77584491 - L2 LINE L2 0 3313 2869 * 743 295 114 0 chr12 66697966 66698281 -77584208 - L2 LINE L2 -1442 1872 1522 480 330 178 13 chr12 66698326 66698641 -77583848 - L2 LINE L2 -2086 1228 862 192 200 20 160 chr12 66698741 66698785 -77583704 - L2 LINE L2 -2462 852 828 237 83 0 0 chr12 66698785 66698821 -77583668 + (TG)n Simple_repeat Simple_repeat 2 37 0 192 200 20 160 chr12 66698821 66698876 -77583613 - L2 LINE L2 -2486 828 767 2335 107 32 0 chr12 66698876 66699221 -77583268 + MER39B LTR ERV1 1 356 -297 363 83 83 0 chr12 66699223 66699283 -77583206 + LTR49-int LTR ERV1 4441 4505 -1826 5976 118 15 2 chr12 66699324 66700677 -77581812 - L1PA14 LINE L1 -4 6157 4795 7053 168 22 7 chr12 66700685 66702010 -77580479 + LTR49-int LTR ERV1 4497 5841 -490 3173 163 7 16 chr12 66702055 66702615 -77579874 + MER39B LTR ERV1 93 647 -6 970 312 203 12 chr12 66702644 66703240 -77579249 - L2 LINE L2 -2566 748 39 267 305 48 29 chr12 66703478 66703583 -77578906 + MIR SINE MIR 59 165 -97 1024 25 0 0 chr12 66703894 66704014 -77578475 - L1PA4 LINE L1 -1154 4992 4873 7478 27 7 0 chr12 66704015 66705162 -77577327 + L1PA4 LINE L1 5000 6152 -3 293 278 61 96 chr12 66705615 66705813 -77576676 - L3 LINE CR1 -542 1035 845 330 118 0 0 chr12 66706176 66706227 -77576262 - MADE1 DNA Mariner 0 80 30 366 23 0 0 chr12 66706674 66706717 -77575772 + (TG)n Simple_repeat Simple_repeat 2 44 0 256 267 0 0 chr12 66707599 66707674 -77574815 + T-rich Low_complexity Low_complexity 1 75 0 21 36 0 0 chr12 66707958 66707986 -77574503 + AT_rich Low_complexity Low_complexity 1 28 0 7044 157 10 2 chr12 66708607 66710239 -77572250 - HUERS-P3 LTR ERV1 -1078 7841 6096 3754 42 0 2 chr12 66710239 66710696 -77571793 - L1PA5 LINE L1 -1 6153 5698 * 9659 50 5 0 chr12 66710694 66712690 -77569799 + L1PA4 LINE L1 4156 6152 -3 2041 53 0 12 chr12 66712789 66713036 -77569453 - AluY SINE Alu -51 260 17 685 347 141 38 chr12 66713087 66714011 -77568478 + L2 LINE L2 1851 2869 -445 1978 207 24 21 chr12 66714214 66714635 -77567854 + MSTB LTR MaLR 3 424 -2 255 370 7 32 chr12 66714646 66714800 -77567689 + L2 LINE L2 3152 3301 -12 21 82 0 0 chr12 66714856 66714905 -77567584 + AT_rich Low_complexity Low_complexity 1 49 0 1951 215 68 28 chr12 66715064 66715562 -77566927 - MLT2B1 LTR ERVL -2 518 1 24 0 0 0 chr12 66715662 66715686 -77566803 + AT_rich Low_complexity Low_complexity 1 24 0 306 208 0 0 chr12 66716413 66716466 -77566023 - MLT2B1 LTR ERVL -69 451 399 801 197 16 27 chr12 66716784 66716967 -77565522 - MER3 DNA MER1_type -28 181 1 667 287 104 72 chr12 66718963 66719395 -77563094 - L2 LINE L2 -4 3309 2864 1080 90 0 0 chr12 66719395 66719528 -77562961 + AluSg SINE Alu 1 133 -177 1864 143 34 0 chr12 66719528 66719854 -77562635 + AluSq SINE Alu 1 313 0 868 303 125 32 chr12 66719856 66720501 -77561988 - L2 LINE L2 -676 2638 1864 2906 145 16 12 chr12 66720507 66720998 -77561491 + LOR1a LTR ERV1 5 497 0 2308 173 13 5 chr12 66720998 66721391 -77561098 + LOR1a-int LTR ERV1 1 396 -7724 * 3044 154 13 2 chr12 66721386 66721912 -77560577 + LOR1-int LTR ERV1 3247 3778 -4342 1511 188 124 0 chr12 66722201 66722499 -77559990 + LOR1-int LTR ERV1 3777 4111 -4009 8170 43 0 0 chr12 66722543 66723582 -77558907 + L1P LINE L1 2241 3279 -2867 347 317 41 16 chr12 66724255 66724378 -77558111 - MIR3 SINE MIR 0 208 83 202 362 117 57 chr12 66724491 66724927 -77557562 - L2 LINE L2 0 3272 2811 1559 136 35 57 chr12 66725339 66725656 -77556833 - L1MA7 LINE L1 -1 6290 5981 428 272 10 0 chr12 66725874 66725977 -77556512 - L2 LINE L2 0 3313 3210 2062 141 0 0 chr12 66726366 66726672 -77555817 - AluSx SINE Alu -6 306 1 1395 184 35 35 chr12 66727147 66727435 -77555054 - AluJo SINE Alu -22 290 3 1195 173 0 9 chr12 66727455 66727669 -77554820 + MLT1A1 LTR MaLR 154 365 0 24 0 0 0 chr12 66728531 66728555 -77553934 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 66729594 66729617 -77552872 + AT_rich Low_complexity Low_complexity 1 23 0 320 333 106 58 chr12 66730123 66730679 -77551810 + HAL1b LINE L1 73 655 -693 685 303 112 2 chr12 66731296 66731696 -77550793 - LTR50 LTR ERVL 0 675 317 629 263 86 0 chr12 66731753 66731928 -77550561 - LTR50 LTR ERVL -605 190 1 24 0 0 0 chr12 66732073 66732097 -77550392 + AT_rich Low_complexity Low_complexity 1 24 0 569 79 0 0 chr12 66732097 66732173 -77550316 + L1PA4 LINE L1 4 79 -6067 35696 37 58 2 chr12 66732173 66737493 -77544996 + L1PA4 LINE L1 537 6152 -3 30 45 0 0 chr12 66737511 66737555 -77544934 + AT_rich Low_complexity Low_complexity 1 44 0 25 75 0 0 chr12 66738604 66738657 -77543832 + AT_rich Low_complexity Low_complexity 1 53 0 538 324 72 14 chr12 66739605 66739827 -77542662 + MIR SINE MIR 28 262 0 739 119 8 0 chr12 66739846 66739964 -77542525 + AluSg/x SINE Alu 183 301 -8 22 0 0 0 chr12 66740693 66740715 -77541774 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr12 66741295 66741327 -77541162 + AT_rich Low_complexity Low_complexity 1 32 0 1050 170 31 0 chr12 66742019 66742213 -77540276 + MLT1D LTR MaLR 43 242 -263 198 143 0 0 chr12 66742222 66742257 -77540232 + (GA)n Simple_repeat Simple_repeat 2 36 0 1144 193 82 8 chr12 66742313 66742556 -77539933 + MLT1D LTR MaLR 245 505 0 199 318 140 37 chr12 66742843 66742950 -77539539 + L2 LINE L2 3154 3271 -1 1789 204 58 22 chr12 66742950 66743401 -77539088 - MLT1C LTR MaLR 0 467 1 3183 68 27 18 chr12 66743913 66744353 -77538136 + MLT2A1 LTR ERVL 1 444 0 241 247 0 32 chr12 66744371 66744464 -77538025 - L1MC4 LINE L1 -1339 6703 6614 * 286 230 35 0 chr12 66744383 66744470 -77538019 + L1MC4 LINE L1 6614 6703 -1339 25 0 0 0 chr12 66744669 66744694 -77537795 + AT_rich Low_complexity Low_complexity 1 25 0 401 346 129 52 chr12 66744863 66745644 -77536845 + L2 LINE L2 1992 2832 -482 534 362 86 22 chr12 66746209 66746571 -77535918 + L3 LINE CR1 1159 1543 -34 348 24 0 0 chr12 66746770 66746811 -77535678 + (CA)n Simple_repeat Simple_repeat 2 42 0 348 190 55 0 chr12 66747280 66747443 -77535046 + (TA)n Simple_repeat Simple_repeat 1 172 0 288 253 105 11 chr12 66749305 66749400 -77533089 + MIR SINE MIR 14 117 -145 2390 53 20 3 chr12 66751126 66751429 -77531060 - AluY SINE Alu -3 308 1 422 319 150 5 chr12 66751432 66751645 -77530844 - MIR SINE MIR -17 245 2 1504 211 36 12 chr12 66752079 66752690 -77529799 - LTR58 LTR ERV1 0 679 11 531 253 198 0 chr12 66752790 66752972 -77529517 - MER20 DNA MER1_type 0 219 2 2325 214 70 22 chr12 66753319 66754064 -77528425 - L1MC4a LINE L1 -91 7805 6998 289 348 42 0 chr12 66754508 66754626 -77527863 + MIR SINE MIR 4 126 -136 267 309 36 0 chr12 66754630 66754714 -77527775 + MIR SINE MIR 99 185 -77 11902 33 1 0 chr12 66754851 66756290 -77526199 + L1P LINE L1 3382 4822 -1324 1048 244 30 26 chr12 66756311 66756680 -77525809 - ERVL-C1 LTR ERVL -4306 1458 1055 1621 152 95 18 chr12 66756689 66757086 -77525403 - MER4A LTR ERV1 -1 663 110 372 22 0 0 chr12 66757086 66757131 -77525358 + (TG)n Simple_repeat Simple_repeat 2 46 0 1621 152 95 18 chr12 66757131 66757251 -77525238 - MER4A LTR ERV1 -554 110 1 326 289 89 17 chr12 66757251 66757431 -77525058 - ERVL-C1 LTR ERVL -4643 1011 819 1362 290 90 40 chr12 66757469 66758144 -77524345 - ERVL-C1 LTR ERVL -5055 709 1 732 276 50 60 chr12 66758145 66758544 -77523945 - MLT2C1 LTR ERVL -1 396 2 2247 263 73 48 chr12 66758584 66760154 -77522335 - L1M4 LINE L1 -1428 4718 3109 327 295 54 71 chr12 66760371 66760666 -77521823 + L1M4 LINE L1 4411 4700 -1446 303 284 48 29 chr12 66760721 66760929 -77521560 - HAL1b LINE L1 -524 824 613 303 28 0 0 chr12 66761590 66761626 -77520863 + (CA)n Simple_repeat Simple_repeat 2 37 0 9683 228 39 72 chr12 66761714 66762610 -77519879 + L1 LINE L1 3 927 -5921 399 21 0 0 chr12 66762610 66762658 -77519831 + (CA)n Simple_repeat Simple_repeat 2 49 0 9683 228 39 72 chr12 66762658 66765177 -77517312 + L1 LINE L1 927 3304 -3544 475 210 25 17 chr12 66765171 66765290 -77517199 + L1 LINE L1 5189 5308 -1540 * 908 179 56 4 chr12 66765356 66765590 -77516899 + L1MA4A LINE L1 3596 3841 -3007 1404 181 11 48 chr12 66765599 66765870 -77516619 + AluJb SINE Alu 28 288 -24 1762 216 40 28 chr12 66765898 66766447 -77516042 - MLT2A2 LTR ERVL 0 554 1 5047 131 10 8 chr12 66766447 66767226 -77515263 - HERVL-A2 LTR ERVL 0 5654 4874 14120 100 9 0 chr12 66767327 66769269 -77513220 - HERVL LTR ERVL -280 5374 3415 1640 197 70 32 chr12 66769278 66769816 -77512673 - MLT2A2 LTR ERVL 0 554 1 9004 185 33 19 chr12 66769816 66771213 -77511276 + L1MA4A LINE L1 3841 5216 -1789 2258 103 0 0 chr12 66771213 66771514 -77510975 + AluY SINE Alu 3 303 -8 9004 185 33 19 chr12 66771514 66773226 -77509263 + L1MA4A LINE L1 5216 6998 -7 2123 100 13 13 chr12 66773242 66773551 -77508938 + AluSp SINE Alu 5 313 0 524 194 7 72 chr12 66774008 66774147 -77508342 - FLAM_C SINE Alu -3 130 1 2084 121 20 73 chr12 66774324 66774720 -77507769 - THE1C LTR MaLR 0 375 1 3357 134 35 24 chr12 66774725 66775301 -77507188 - THE1C-int LTR MaLR -6 1574 993 6564 148 71 10 chr12 66775415 66776596 -77505893 - THE1C-int LTR MaLR -326 1254 2 2030 168 27 14 chr12 66776597 66776967 -77505522 - THE1C LTR MaLR 0 375 1 3050 219 39 18 chr12 66777109 66777871 -77504618 - L1MC2 LINE L1 -6 6338 5561 2126 149 14 0 chr12 66777872 66778221 -77504268 - LTR43 LTR ERV1 0 602 249 353 109 18 0 chr12 66778219 66778274 -77504215 - LTR43 LTR ERV1 -546 56 1 * 1147 218 89 22 chr12 66778296 66778909 -77503580 - L1MC2 LINE L1 -743 5403 4907 2819 15 24 0 chr12 66779005 66779343 -77503146 + L1P LINE L1 4176 4521 -1625 207 0 0 0 chr12 66781098 66781121 -77501368 + (T)n Simple_repeat Simple_repeat 1 23 0 237 279 0 0 chr12 66781160 66781228 -77501261 - MIR SINE MIR -111 151 84 36 0 0 55 chr12 66781445 66781500 -77500989 + AT_rich Low_complexity Low_complexity 1 52 0 30 45 0 0 chr12 66783029 66783073 -77499416 + AT_rich Low_complexity Low_complexity 1 44 0 190 304 42 105 chr12 66783397 66783588 -77498901 + MIR SINE MIR 66 244 -18 825 241 53 0 chr12 66783659 66783866 -77498623 + MER58A DNA MER1_type 7 224 0 233 306 42 0 chr12 66784299 66784371 -77498118 + MIR SINE MIR 173 247 -15 520 349 76 4 chr12 66784372 66784432 -77498057 - MIR SINE MIR -1 261 207 1599 183 37 48 chr12 66784432 66784809 -77497680 + THE1C LTR MaLR 1 373 -2 520 349 76 4 chr12 66784809 66784986 -77497503 - MIR SINE MIR -55 207 7 721 158 0 0 chr12 66785404 66785531 -77496958 + L1PA15 LINE L1 6032 6158 -7 203 167 0 0 chr12 66785770 66785806 -77496683 + A-rich Low_complexity Low_complexity 2 37 0 3201 287 63 36 chr12 66786573 66788808 -77493681 + L1M3e LINE L1 7 3095 -4011 997 68 0 0 chr12 66788808 66788941 -77493548 + L1PA4 LINE L1 6016 6148 -7 3201 287 63 36 chr12 66788941 66789023 -77493466 + L1M3e LINE L1 3095 3173 -3933 6347 225 69 13 chr12 66789047 66790848 -77491641 + L1M3e LINE L1 3161 5062 -2044 1163 204 0 17 chr12 66790848 66791079 -77491410 - AluJb SINE Alu -85 227 1 5230 232 47 9 chr12 66791082 66792444 -77490045 - L1PBb LINE L1 -4293 2915 1410 295 239 49 61 chr12 66792633 66792796 -77489693 - L1PBb LINE L1 -5765 1444 1284 615 324 143 59 chr12 66792838 66793397 -77489092 - L1PBb LINE L1 -5855 1354 749 254 135 0 0 chr12 66793518 66793555 -77488934 - LTR50 LTR ERVL -758 37 1 24 0 0 0 chr12 66793700 66793724 -77488765 + AT_rich Low_complexity Low_complexity 1 24 0 525 122 12 0 chr12 66793724 66793806 -77488683 + L1P LINE L1 4 86 -6060 * 785 50 10 0 chr12 66793799 66793900 -77488589 + L1P LINE L1 537 638 -5508 348 312 78 13 chr12 66794216 66794370 -77488119 - L1M2 LINE L1 -6018 831 668 425 290 103 10 chr12 66794889 66795189 -77487300 + L1 LINE L1 3650 3977 -2169 2534 55 0 3 chr12 66795236 66795543 -77486946 - AluY SINE Alu -5 306 1 1597 192 12 59 chr12 66795581 66795988 -77486501 + MLT1B LTR MaLR 1 388 -2 232 231 77 51 chr12 66796131 66796287 -77486202 + L1 LINE L1 4281 4440 -1706 337 327 58 43 chr12 66796316 66796643 -77485846 + L1ME LINE L1 4464 4795 -1351 26 0 0 0 chr12 66796823 66796849 -77485640 + AT_rich Low_complexity Low_complexity 1 26 0 392 285 171 24 chr12 66797918 66798287 -77484202 + L1M4 LINE L1 2837 3259 -2887 480 259 15 35 chr12 66798294 66798451 -77484038 - LTR37B LTR ERV1 -1 467 313 315 0 0 0 chr12 66798451 66798486 -77484003 + (TA)n Simple_repeat Simple_repeat 1 35 0 480 259 15 35 chr12 66798486 66798525 -77483964 - LTR37B LTR ERV1 -155 313 275 226 255 10 20 chr12 66798742 66798844 -77483645 + A-rich Low_complexity Low_complexity 3 103 0 394 250 26 72 chr12 66798939 66799091 -77483398 - Charlie2 DNA MER1_type -2565 217 73 261 312 151 15 chr12 66799158 66799357 -77483132 + L1ME LINE L1 5669 5894 -276 24 32 0 0 chr12 66800305 66800336 -77482153 + AT_rich Low_complexity Low_complexity 1 31 0 229 270 0 0 chr12 66800606 66800680 -77481809 - LTR66 LTR ERVL -138 472 399 243 259 74 0 chr12 66800680 66800761 -77481728 + L1MC4 LINE L1 6617 6703 -1339 215 243 0 14 chr12 66800786 66800860 -77481629 + (TATATG)n Simple_repeat Simple_repeat 1 73 0 4289 214 32 24 chr12 66801278 66802249 -77480240 + L1MA5 LINE L1 15 993 -6572 911 99 142 0 chr12 66802260 66802401 -77480088 + MSTA LTR MaLR 268 428 0 6879 189 9 7 chr12 66802402 66803776 -77478713 + L1MA5 LINE L1 4953 6328 -1237 1076 205 13 0 chr12 66803876 66804105 -77478384 - L1MDb LINE L1 -1371 5035 4804 3187 227 96 17 chr12 66804108 66805230 -77477259 + L1MA5 LINE L1 6503 7717 -2 26 50 0 0 chr12 66805339 66805379 -77477110 + AT_rich Low_complexity Low_complexity 1 40 0 185 408 92 0 chr12 66805475 66805595 -77476894 - L2 LINE L2 -8 3264 3134 22 70 0 0 chr12 66805615 66805658 -77476831 + AT_rich Low_complexity Low_complexity 1 43 0 4588 159 59 64 chr12 66806859 66807764 -77474725 - L1MA9 LINE L1 0 6312 5426 2178 115 0 0 chr12 66807764 66808060 -77474429 - AluSg SINE Alu -14 296 1 4588 159 59 64 chr12 66808060 66808945 -77473544 - L1MA9 LINE L1 -886 5426 4538 1965 288 67 21 chr12 66809190 66810497 -77471992 - L1M4 LINE L1 -1302 4844 3478 21 36 0 0 chr12 66810500 66810528 -77471961 + AT_rich Low_complexity Low_complexity 1 28 0 2023 274 60 75 chr12 66810653 66812331 -77470158 - L1MDb LINE L1 -1755 4651 2998 21918 41 3 0 chr12 66812322 66815826 -77466663 - L1PA4 LINE L1 0 6155 2643 2031 58 0 0 chr12 66815826 66816085 -77466404 - L1PA4 LINE L1 -5884 262 4 481 250 29 34 chr12 66816086 66816290 -77466199 - L1MDb LINE L1 -3385 3021 2819 1499 252 112 30 chr12 66816301 66816482 -77466007 + MLT1D LTR MaLR 3 168 -337 3319 48 7 0 chr12 66816482 66816900 -77465589 + L1PA3 LINE L1 5734 6154 -1 1499 252 112 30 chr12 66816900 66817183 -77465306 + MLT1D LTR MaLR 168 505 0 828 236 63 43 chr12 66817183 66817598 -77464891 - L1MDb LINE L1 -3593 2813 2391 3448 242 67 42 chr12 66817686 66819308 -77463181 - L1MDb LINE L1 -3991 2415 776 22 0 0 0 chr12 66819459 66819481 -77463008 + AT_rich Low_complexity Low_complexity 1 22 0 185 81 0 27 chr12 66819603 66819640 -77462849 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 40 79 0 0 chr12 66819874 66819963 -77462526 + AT_rich Low_complexity Low_complexity 1 89 0 25 31 0 0 chr12 66819978 66820010 -77462479 + AT_rich Low_complexity Low_complexity 1 32 0 192 170 45 9 chr12 66820017 66820129 -77462360 + (TA)n Simple_repeat Simple_repeat 2 117 0 595 164 134 0 chr12 66820581 66820715 -77461774 - Tigger1 DNA MER2_type -65 2353 2202 543 244 79 18 chr12 66820687 66820851 -77461638 - Tigger1 DNA MER2_type -2242 176 3 * 22 35 0 0 chr12 66821096 66821125 -77461364 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr12 66821345 66821389 -77461100 + AT_rich Low_complexity Low_complexity 1 44 0 2126 187 8 77 chr12 66821424 66821915 -77460574 + MER44D DNA MER2_type 1 512 -93 214 171 0 0 chr12 66822863 66822898 -77459591 + (TATATG)n Simple_repeat Simple_repeat 6 40 0 2577 228 40 10 chr12 66822943 66823712 -77458777 + L1M1 LINE L1 3398 4191 -3374 361 304 47 101 chr12 66824565 66824841 -77457648 + MIR SINE MIR 2 262 0 28 0 0 0 chr12 66826305 66826333 -77456156 + AT_rich Low_complexity Low_complexity 1 28 0 1162 186 98 47 chr12 66827195 66827498 -77454991 + AluJo SINE Alu 1 317 0 622 277 51 31 chr12 66828040 66828574 -77453915 + L1MC5 LINE L1 6442 7075 -818 9214 45 1 174 chr12 66829409 66831102 -77451387 - L1P LINE L1 -4060 2086 688 3206 40 0 0 chr12 66831101 66831500 -77450989 + L1P LINE L1 2116 2514 -3632 * 2286 169 33 2 chr12 66831795 66832215 -77450274 - Tigger1 DNA MER2_type 0 2418 1986 5326 177 14 5 chr12 66832219 66833508 -77448981 - L1PA15 LINE L1 -13 6152 4856 364 189 0 0 chr12 66833503 66833577 -77448912 + L1P LINE L1 3262 3335 -2811 * 4208 223 18 42 chr12 66833580 66835046 -77447443 + L1P LINE L1 3506 4860 -1286 10468 146 20 9 chr12 66835055 66836799 -77445690 - Tigger1 DNA MER2_type -424 1994 232 5974 23 4 0 chr12 66836799 66837497 -77444992 - L1P LINE L1 -1830 4316 3616 4190 50 6 2 chr12 66837497 66838029 -77444460 + L1PA4 LINE L1 5616 6154 -1 1977 274 60 75 chr12 66838030 66839697 -77442792 + L1 LINE L1 2750 4391 -1755 21 36 0 0 chr12 66839822 66839850 -77442639 + AT_rich Low_complexity Low_complexity 1 28 0 1996 286 63 24 chr12 66839853 66841169 -77441320 + L1M4 LINE L1 3478 4844 -1302 3154 166 37 95 chr12 66841415 66842298 -77440191 + L1 LINE L1 4538 5369 -777 2288 113 0 0 chr12 66842299 66842608 -77439881 + AluSg SINE Alu 1 309 -1 513 43 14 0 chr12 66842708 66842777 -77439712 + L1PA3 LINE L1 6070 6139 -16 1121 202 24 20 chr12 66842786 66843039 -77439450 - Tigger1 DNA MER2_type -2163 255 2 312 345 0 21 chr12 66843197 66843342 -77439147 - MIR SINE MIR -26 236 95 636 222 19 3 chr12 66843378 66843589 -77438900 + MLT1A1 LTR MaLR 109 365 0 1985 170 81 2 chr12 66843590 66843985 -77438504 + MSTB LTR MaLR 1 426 0 206 329 13 13 chr12 66845289 66845365 -77437124 + L3b LINE CR1 1390 1465 -118 1248 281 132 14 chr12 66845782 66846234 -77436255 + MER77 LTR ERV1 128 601 -4 21 0 0 0 chr12 66846277 66846298 -77436191 + AT_rich Low_complexity Low_complexity 1 21 0 810 239 36 0 chr12 66846730 66846952 -77435537 - L1 LINE L1 -1637 4509 4280 236 53 26 0 chr12 66846952 66846990 -77435499 + (TG)n Simple_repeat Simple_repeat 2 40 0 1403 169 12 0 chr12 66847002 66847250 -77435239 + L1PA15 LINE L1 5913 6163 -2 245 243 14 0 chr12 66847252 66847322 -77435167 + L1M3a LINE L1 856 926 -5029 2154 160 3 6 chr12 66847557 66847895 -77434594 - MER1B DNA MER1_type -2 337 1 269 180 16 16 chr12 66847899 66847960 -77434529 + L1ME2 LINE L1 6095 6155 -9 30 27 0 0 chr12 66848579 66848616 -77433873 + AT_rich Low_complexity Low_complexity 1 37 0 5235 32 3 3 chr12 66850293 66850920 -77431569 + L1PA3 LINE L1 5529 6155 0 1444 212 3 10 chr12 66850982 66851275 -77431214 - AluJo SINE Alu -19 293 3 188 285 231 0 chr12 66852290 66852420 -77430069 + L2 LINE L2 3154 3313 0 23 0 0 0 chr12 66852651 66852674 -77429815 + AT_rich Low_complexity Low_complexity 1 23 0 460 306 106 30 chr12 66852975 66853048 -77429441 - MER70B LTR ERVL -156 422 356 1368 232 5 63 chr12 66853048 66853431 -77429058 - MLT1A1 LTR MaLR -3 362 2 460 306 106 30 chr12 66853431 66853556 -77428933 - MER70B LTR ERVL -222 356 209 493 301 121 0 chr12 66853877 66854050 -77428439 - MER70B LTR ERVL -381 197 4 266 225 22 0 chr12 66854066 66854155 -77428334 + (CATATA)n Simple_repeat Simple_repeat 3 93 0 264 30 0 0 chr12 66854718 66854751 -77427738 + (TA)n Simple_repeat Simple_repeat 1 33 0 6426 37 4 0 chr12 66855383 66856201 -77426288 - L1P LINE L1 -2685 3461 2641 1973 58 4 0 chr12 66856199 66856457 -77426032 - L1P LINE L1 -5884 262 4 * 521 259 30 20 chr12 66856458 66856659 -77425830 - L1M4 LINE L1 -3385 2761 2559 627 279 39 0 chr12 66856670 66856849 -77425640 + MLT1D LTR MaLR 3 188 -317 1928 83 0 0 chr12 66856851 66857115 -77425374 + L1PA3 LINE L1 5734 5997 -158 14540 35 1 0 chr12 66857381 66859543 -77422946 + L1P2 LINE L1 3622 5785 -370 466 292 56 19 chr12 66860072 66860233 -77422256 - MIR SINE MIR -87 175 9 209 194 0 0 chr12 66860568 66860604 -77421885 + (TG)n Simple_repeat Simple_repeat 1 36 0 1960 148 111 8 chr12 66860806 66861192 -77421297 + MSTA LTR MaLR 1 426 -2 192 179 0 0 chr12 66861195 66861234 -77421255 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr12 66861885 66861907 -77420582 + AT_rich Low_complexity Low_complexity 1 22 0 539 248 0 50 chr12 66863305 66863446 -77419043 + MER63 DNA MER1_type 1 760 -76 1903 170 0 0 chr12 66864745 66865039 -77417450 - AluSx SINE Alu -18 294 1 251 271 57 0 chr12 66865040 66865110 -77417379 + MER20 DNA MER1_type 119 192 -27 1373 242 22 69 chr12 66865121 66865583 -77416906 + MLT1F LTR MaLR 1 440 -102 21 36 0 0 chr12 66865775 66865803 -77416686 + AT_rich Low_complexity Low_complexity 1 28 0 289 307 47 39 chr12 66866724 66866851 -77415638 - L2 LINE L2 -47 3266 3139 1158 241 94 23 chr12 66866851 66867287 -77415202 + MLT1C LTR MaLR 1 467 0 183 350 42 8 chr12 66867287 66867407 -77415082 - L2 LINE L2 -170 3143 3020 26 74 0 0 chr12 66867896 66867950 -77414539 + AT_rich Low_complexity Low_complexity 1 54 0 436 320 11 17 chr12 66868343 66868521 -77413968 + MER5B DNA MER1_type 1 177 -1 22 56 0 0 chr12 66869978 66870014 -77412475 + AT_rich Low_complexity Low_complexity 1 36 0 3420 104 14 8 chr12 66870933 66871441 -77411048 + MER9 LTR ERVK 1 511 0 27 29 0 0 chr12 66871787 66871821 -77410668 + AT_rich Low_complexity Low_complexity 1 34 0 1542 238 28 16 chr12 66871828 66872215 -77410274 - MSTD LTR MaLR 0 396 5 25 0 0 0 chr12 66872256 66872281 -77410208 + AT_rich Low_complexity Low_complexity 1 25 0 330 293 95 58 chr12 66872310 66872552 -77409937 + L1MDa LINE L1 34 284 -6256 835 167 4 15 chr12 66872557 66872821 -77409668 + GA-rich Low_complexity Low_complexity 1 261 0 243 218 0 0 chr12 66873019 66873074 -77409415 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 228 235 0 82 chr12 66873076 66873174 -77409315 - L1MC4 LINE L1 -1339 6703 6614 407 244 9 0 chr12 66873178 66873293 -77409196 + (CATATA)n Simple_repeat Simple_repeat 2 117 0 232 256 22 22 chr12 66873293 66873383 -77409106 - L1MC4 LINE L1 -1339 6703 6614 2317 131 3 11 chr12 66873404 66873777 -77408712 + L1PB1 LINE L1 5782 6151 0 5801 155 17 19 chr12 66873786 66874811 -77407678 + HSMAR2 DNA Mariner 279 1300 -2 1257 232 48 40 chr12 66874820 66875174 -77407315 - MLT2D LTR ERVL -57 357 1 1471 242 15 27 chr12 66875174 66875556 -77406933 + L1MD2 LINE L1 5979 6357 -2 330 242 21 11 chr12 66876168 66876263 -77406226 + Charlie1 DNA MER1_type 1821 1916 -845 1314 210 4 26 chr12 66876290 66876562 -77405927 - AluJb SINE Alu -26 286 21 2606 230 85 11 chr12 66876562 66877363 -77405126 + Charlie1 DNA MER1_type 1902 2761 0 21 0 0 0 chr12 66877370 66877391 -77405098 + AT_rich Low_complexity Low_complexity 1 21 0 7437 37 1 0 chr12 66878234 66879476 -77403013 + L1PA4 LINE L1 4911 6154 -1 344 253 188 0 chr12 66879774 66879928 -77402561 - L1MC5 LINE L1 -1136 6825 6643 403 313 116 31 chr12 66879946 66880240 -77402249 - HAL1b LINE L1 -969 379 61 203 239 22 0 chr12 66880242 66880288 -77402201 + (TA)n Simple_repeat Simple_repeat 1 47 0 300 184 13 40 chr12 66880288 66880364 -77402125 - L1MC4 LINE L1 -1339 6703 6630 22 35 0 0 chr12 66880435 66880464 -77402025 + AT_rich Low_complexity Low_complexity 1 29 0 225 140 20 20 chr12 66881213 66881263 -77401226 + T-rich Low_complexity Low_complexity 3 52 0 1570 196 7 17 chr12 66882390 66882681 -77399808 + AluJo SINE Alu 1 288 -24 1841 141 4 4 chr12 66883010 66883286 -77399203 - AluSx SINE Alu -36 276 1 184 359 31 0 chr12 66883520 66883584 -77398905 - MIR SINE MIR -22 240 175 26 0 0 0 chr12 66884450 66884476 -77398013 + AT_rich Low_complexity Low_complexity 1 26 0 26 50 0 0 chr12 66885648 66885688 -77396801 + AT_rich Low_complexity Low_complexity 1 40 0 222 176 0 0 chr12 66885775 66885826 -77396663 + (TA)n Simple_repeat Simple_repeat 2 52 0 26 93 0 0 chr12 66886154 66886229 -77396260 + AT_rich Low_complexity Low_complexity 1 75 0 31 26 0 0 chr12 66886435 66886473 -77396016 + AT_rich Low_complexity Low_complexity 1 38 0 1761 155 23 7 chr12 66887011 66887314 -77395175 + AluSx SINE Alu 1 308 -4 17785 39 1 0 chr12 66887319 66889553 -77392936 + L1PA4 LINE L1 1731 3967 -2179 6304 14 1 1 chr12 66889537 66890265 -77392224 + L1HS LINE L1 5428 6155 0 * 11633 38 4 2 chr12 66890262 66892253 -77390236 + L1PA4 LINE L1 3951 5946 -209 789 145 0 38 chr12 66892353 66892539 -77389950 + (GAA)n Simple_repeat Simple_repeat 2 180 0 864 73 8 47 chr12 66892552 66892791 -77389698 + (GAA)n Simple_repeat Simple_repeat 1 229 0 2611 264 77 16 chr12 66893511 66894681 -77387808 + L1MDb LINE L1 722 1941 -4465 712 189 0 0 chr12 66894715 66894842 -77387647 - MLT1D LTR MaLR 0 505 379 510 254 32 0 chr12 66894856 66894982 -77387507 - MLT1A2 LTR MaLR -242 132 3 * 729 226 7 13 chr12 66894982 66895133 -77387356 + MLT1C LTR MaLR 318 467 0 1987 282 65 43 chr12 66895133 66896171 -77386318 + L1M4 LINE L1 3695 4755 -1391 5557 182 28 11 chr12 66896172 66897599 -77384890 + L1P5 LINE L1 1783 3291 -3571 4650 126 94 3 chr12 66897599 66898356 -77384133 - LTR12 LTR ERV1 0 826 1 901 234 35 45 chr12 66898551 66898841 -77383648 - pTR5 LTR ERV1 -1410 1028 742 10604 208 34 6 chr12 66898843 66901968 -77380521 + L1P5 LINE L1 3294 6508 -359 307 211 21 21 chr12 66901970 66902065 -77380424 + (CATATA)n Simple_repeat Simple_repeat 4 98 0 8920 62 0 1 chr12 66902174 66904115 -77378374 + L1PA4 LINE L1 4213 6155 0 2077 162 13 16 chr12 66904284 66904660 -77377829 + THE1C LTR MaLR 1 375 0 191 338 56 19 chr12 66904715 66904845 -77377644 - MIR SINE MIR -66 142 38 180 245 0 19 chr12 66906672 66906725 -77375764 + MER5C DNA MER1_type 39 90 -234 365 257 92 18 chr12 66907565 66907674 -77374815 - MER5B DNA MER1_type 0 178 62 260 319 198 0 chr12 66907694 66907810 -77374679 - MER5A DNA MER1_type -7 182 44 275 157 14 0 chr12 66907843 66907913 -77374576 + (TA)n Simple_repeat Simple_repeat 1 71 0 2094 114 0 10 chr12 66907986 66908285 -77374204 - AluSg SINE Alu -14 296 1 22 35 0 0 chr12 66908626 66908655 -77373834 + AT_rich Low_complexity Low_complexity 1 29 0 489 248 66 0 chr12 66909731 66909878 -77372611 + FLAM_A SINE Alu 1 155 0 622 90 10 9 chr12 66910425 66910523 -77371966 + THE1C LTR MaLR 273 375 0 187 333 73 21 chr12 66912431 66912527 -77369962 + MIR3 SINE MIR 91 191 -17 207 321 95 22 chr12 66912573 66912717 -77369772 + MIR SINE MIR 19 169 -39 193 128 43 0 chr12 66913281 66913328 -77369161 + (TA)n Simple_repeat Simple_repeat 2 50 0 316 282 76 28 chr12 66913411 66913635 -77368854 + MLT1J2 LTR MaLR 188 419 -27 255 326 21 11 chr12 66913726 66913821 -77368668 + MIR3 SINE MIR 112 207 -1 788 244 6 0 chr12 66914590 66914754 -77367735 + FRAM SINE Alu 1 159 -17 604 230 22 140 chr12 66914787 66915143 -77367346 + LTR41 LTR ERVL 31 344 -429 742 236 26 15 chr12 66915281 66915476 -77367013 + MLT1C LTR MaLR 271 467 0 664 264 33 40 chr12 66915507 66915810 -77366679 + L1M4 LINE L1 4006 4306 -1840 1410 266 33 43 chr12 66915850 66916520 -77365969 + L1M4 LINE L1 4410 5072 -1074 678 256 62 9 chr12 66916519 66916758 -77365731 + L1MC3 LINE L1 6388 6704 -1167 * 1709 124 65 24 chr12 66917448 66917738 -77364751 - MSTA LTR MaLR -126 302 1 2176 130 0 0 chr12 66917860 66918161 -77364328 + AluSg SINE Alu 1 301 -9 217 167 33 33 chr12 66918378 66918396 -77364093 + A-rich Low_complexity Low_complexity 5 22 -42 2544 118 0 16 chr12 66918396 66918777 -77363712 + THE1C LTR MaLR 1 375 0 217 167 33 33 chr12 66918777 66918818 -77363671 + A-rich Low_complexity Low_complexity 21 64 0 1473 176 19 6 chr12 66918833 66919145 -77363344 - L1 LINE L1 -935 5211 4896 3786 151 7 19 chr12 66919183 66919641 -77362848 + L1MA8 LINE L1 5212 5656 -635 1531 217 27 0 chr12 66919641 66919936 -77362553 + AluJb SINE Alu 1 303 -9 3786 151 7 19 chr12 66919936 66920238 -77362251 + L1MA8 LINE L1 5656 5960 -331 5534 116 16 13 chr12 66920313 66921207 -77361282 + L1PB2 LINE L1 5254 6149 -2 665 259 49 79 chr12 66921285 66921339 -77361150 + MER110A LTR ERV1 143 197 -294 3401 166 84 8 chr12 66921339 66922008 -77360481 + MER72 LTR ERV1 3 722 0 665 259 49 79 chr12 66922008 66922331 -77360158 + MER110A LTR ERV1 197 491 0 2366 166 73 45 chr12 66922455 66923005 -77359484 - MER34B LTR ERV1 0 565 1 269 233 14 0 chr12 66924184 66924257 -77358232 + (TA)n Simple_repeat Simple_repeat 2 75 0 26 30 0 0 chr12 66924704 66924737 -77357752 + AT_rich Low_complexity Low_complexity 1 33 0 2730 75 95 5 chr12 66924787 66925198 -77357291 + LTR7 LTR ERV1 1 448 -2 1670 142 7 15 chr12 66925507 66925781 -77356708 + AluSx SINE Alu 35 306 -6 935 263 144 29 chr12 66926034 66926444 -77356045 + MLT1D LTR MaLR 49 505 0 664 197 61 105 chr12 66927068 66927296 -77355193 - MER20 DNA MER1_type -1 218 1 258 359 0 0 chr12 66927402 66927480 -77355009 - L2 LINE L2 -59 3213 3136 258 206 68 14 chr12 66927517 66927590 -77354899 + MLT1L LTR MaLR 3 79 -536 21 0 0 0 chr12 66927722 66927743 -77354746 + AT_rich Low_complexity Low_complexity 1 21 0 200 295 168 40 chr12 66928037 66928186 -77354303 - L2 LINE L2 -247 3025 2858 26268 53 8 8 chr12 66928194 66932401 -77350088 + L1PA5 LINE L1 1947 6150 -4 272 359 60 28 chr12 66932426 66932674 -77349815 - L2 LINE L2 -499 2815 2560 322 122 0 204 chr12 66933015 66933113 -77349376 - MADE1 DNA Mariner -1 79 2 852 249 114 43 chr12 66933257 66933723 -77348766 - L1ME LINE L1 -5008 970 472 238 283 0 53 chr12 66933841 66933954 -77348535 - L1ME LINE L1 -5602 468 362 1880 168 24 84 chr12 66934748 66935335 -77347154 + MER39 LTR ERV1 1 707 0 234 175 159 32 chr12 66935964 66936027 -77346462 + LTR67 LTR ERVL 450 520 -37 522 167 79 0 chr12 66936051 66936177 -77346312 - MER96B DNA MER1_type? -191 226 91 975 103 48 9 chr12 66936193 66936434 -77346055 - LTR54B LTR ERV1 -219 279 1 241 200 36 0 chr12 66936583 66936638 -77345851 + CT-rich Low_complexity Low_complexity 2 58 0 234 91 0 0 chr12 66936643 66936676 -77345813 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 187 354 15 46 chr12 66937463 66937658 -77344831 - MIR SINE MIR 0 262 74 195 228 35 0 chr12 66938867 66938924 -77343565 + L2 LINE L2 1066 1124 -2190 192 283 42 67 chr12 66939099 66939219 -77343270 + L2 LINE L2 3147 3263 -50 2555 29 7 3 chr12 66939426 66939732 -77342757 - AluY SINE Alu -4 307 1 200 387 34 76 chr12 66939759 66939878 -77342611 - L2 LINE L2 -5 3267 3154 1711 256 67 29 chr12 66940301 66940880 -77341609 + L2 LINE L2 1788 2388 -926 1261 273 53 23 chr12 66940909 66941308 -77341181 - MLT1D LTR MaLR 0 505 95 529 177 8 8 chr12 66941339 66941463 -77341026 + CT-rich Low_complexity Low_complexity 2 125 0 279 246 31 0 chr12 66941465 66941530 -77340959 - MLT1D LTR MaLR -417 88 22 295 267 16 86 chr12 66941574 66941761 -77340728 + L2 LINE L2 3002 3175 -138 1273 119 3 0 chr12 66941791 66942101 -77340388 - L1PA14 LINE L1 0 6161 5748 768 131 0 0 chr12 66942096 66942218 -77340271 + L1P4 LINE L1 5139 5260 -886 * 2698 134 2 2 chr12 66942227 66942653 -77339836 + L1P4 LINE L1 5344 5769 -392 713 163 8 8 chr12 66942714 66942872 -77339617 + FLAM_C SINE Alu 5 162 0 29 28 0 0 chr12 66943335 66943371 -77339118 + AT_rich Low_complexity Low_complexity 1 36 0 334 0 0 0 chr12 66943439 66943483 -77339006 - L1PA3 LINE L1 0 6155 6112 248 370 0 0 chr12 66943535 66943627 -77338862 - L1MC/D LINE L1 -2211 5597 5506 1881 149 67 14 chr12 66944051 66944407 -77338082 - THE1C LTR MaLR 0 375 1 795 204 13 70 chr12 66945251 66945481 -77337008 - MER20 DNA MER1_type -1 218 2 2364 75 0 3 chr12 66945616 66945908 -77336581 - AluY SINE Alu -20 291 1 21 0 0 0 chr12 66946330 66946351 -77336138 + AT_rich Low_complexity Low_complexity 1 21 0 229 275 14 0 chr12 66946747 66946816 -77335673 + MER57A LTR ERV1 42 111 -292 2706 74 109 0 chr12 66946850 66947253 -77335236 + LTR7 LTR ERV1 2 448 -2 19171 92 47 18 chr12 66947255 66950166 -77332323 + HERVH LTR ERV1 1 2995 -4718 8410 104 5 5 chr12 66950145 66952218 -77330271 + HERVH LTR ERV1 3140 5273 -1818 * 1221 139 43 30 chr12 66952215 66952445 -77330044 + HERVH LTR ERV1 5597 5829 -1884 * 2447 90 48 13 chr12 66952413 66952792 -77329697 + HERVH LTR ERV1 7322 7713 0 2638 84 109 0 chr12 66952792 66953196 -77329293 + LTR7 LTR ERV1 1 448 -2 801 214 103 42 chr12 66953215 66953477 -77329012 + MER57A LTR ERV1 125 402 -1 29 0 0 0 chr12 66953608 66953637 -77328852 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr12 66954257 66954292 -77328197 + AT_rich Low_complexity Low_complexity 1 35 0 941 246 28 62 chr12 66954611 66954998 -77327491 + LTR37B LTR ERV1 1 374 -94 2289 73 0 20 chr12 66956121 66956424 -77326065 - AluY SINE Alu -12 299 3 629 289 83 18 chr12 66957226 66957454 -77325035 + MIR SINE MIR 20 262 0 2543 227 89 42 chr12 66957577 66958260 -77324229 - MER21B LTR ERV1 -54 809 95 305 244 9 87 chr12 66958414 66958529 -77323960 - MER21B LTR ERV1 -757 106 1 2172 134 0 0 chr12 66958581 66958888 -77323601 - AluSx SINE Alu -5 307 1 342 297 90 71 chr12 66959005 66959328 -77323161 + MLT1J LTR MaLR 175 503 -8 25 65 0 0 chr12 66963182 66963228 -77319261 + AT_rich Low_complexity Low_complexity 1 46 0 476 274 26 0 chr12 66964722 66964835 -77317654 - L2 LINE L2 -8 3305 3190 385 109 0 0 chr12 66964842 66964897 -77317592 - MLT2A1 LTR ERVL 0 444 390 366 286 0 0 chr12 66964918 66965009 -77317480 - L1MC4 LINE L1 -1339 6703 6613 2827 102 33 2 chr12 66965010 66965404 -77317085 - MLT2A2 LTR ERVL -47 406 1 189 276 92 31 chr12 66965452 66965550 -77316939 - L2 LINE L2 -180 3133 3030 785 320 54 57 chr12 66965652 66966112 -77316377 - L2 LINE L2 -349 2965 2507 965 248 40 46 chr12 66966316 66966869 -77315620 - MLT1E1 LTR MaLR -58 596 1 631 307 97 77 chr12 66967170 66968513 -77313976 + L1PA15-16 LINE L1 -10 1311 -5539 901 283 18 25 chr12 66968727 66969055 -77313434 + L1PA15-16 LINE L1 1263 1559 -5290 * 4161 242 84 31 chr12 66969045 66970544 -77311945 + L1PBb LINE L1 690 2312 -3891 * 4267 220 22 42 chr12 66970520 66971786 -77310703 + L1 LINE L1 4140 5380 -823 578 225 45 6 chr12 66971790 66971968 -77310521 + Charlie5 DNA MER1_type 2437 2621 0 1406 317 47 18 chr12 66972305 66972816 -77309673 + MLT1H1 LTR MaLR 30 555 0 419 266 6 0 chr12 66973516 66973689 -77308800 + (TA)n Simple_repeat Simple_repeat 1 174 0 22 115 0 0 chr12 66973810 66973923 -77308566 + AT_rich Low_complexity Low_complexity 1 113 0 252 100 0 0 chr12 66974352 66974392 -77308097 + (CA)n Simple_repeat Simple_repeat 2 41 0 338 367 58 25 chr12 66976542 66976782 -77305707 + L2 LINE L2 2460 2707 -607 35 24 0 0 chr12 66977093 66977135 -77305354 + AT_rich Low_complexity Low_complexity 1 42 0 380 289 189 37 chr12 66978002 66978192 -77304297 - MIR SINE MIR -39 223 5 202 229 98 49 chr12 66978256 66978317 -77304172 + L2 LINE L2 3190 3253 -19 3584 216 52 9 chr12 66979445 66980330 -77302159 + L1MC3 LINE L1 6855 7777 -8 21 36 0 0 chr12 66980669 66980697 -77301792 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chr12 66980998 66981023 -77301466 + (GA)n Simple_repeat Simple_repeat 2 26 0 510 67 13 0 chr12 66982259 66982334 -77300155 - L1P LINE L1 -3767 2379 2304 32 67 0 0 chr12 66982362 66982422 -77300067 + AT_rich Low_complexity Low_complexity 1 60 0 24 77 0 0 chr12 66982581 66982633 -77299856 + AT_rich Low_complexity Low_complexity 1 52 0 772 279 87 49 chr12 66983456 66983688 -77298801 - L1ME3A LINE L1 -155 6015 5793 1441 206 39 12 chr12 66983688 66984018 -77298471 + MER44D DNA MER2_type 1 609 0 772 279 87 49 chr12 66984018 66984135 -77298354 - L1ME3A LINE L1 -377 5793 5682 1905 175 14 20 chr12 66984135 66984484 -77298005 - MER7A DNA MER2_type 0 346 2 772 279 87 49 chr12 66984484 66984641 -77297848 - L1ME3A LINE L1 -488 5682 5489 580 138 18 9 chr12 66984671 66984780 -77297709 - L1MA4A LINE L1 -6 6297 6188 617 282 51 0 chr12 66984836 66985109 -77297380 - L1ME3A LINE L1 -805 5341 5055 189 132 0 0 chr12 66985112 66985150 -77297339 + (T)n Simple_repeat Simple_repeat 1 38 0 1007 237 80 25 chr12 66985246 66985591 -77296898 + MSTD LTR MaLR 1 396 0 681 326 44 16 chr12 66985592 66986028 -77296461 - L1ME3A LINE L1 -1214 4932 4485 367 330 72 14 chr12 66986271 66986492 -77295997 + L1MEc LINE L1 1353 1586 -4810 21 0 0 0 chr12 66986732 66986753 -77295736 + AT_rich Low_complexity Low_complexity 1 21 0 365 295 97 42 chr12 66987016 66987819 -77294670 + L1MEc LINE L1 2189 3035 -3180 233 257 14 0 chr12 66987860 66987930 -77294559 + L1ME LINE L1 44 114 -5956 300 53 0 0 chr12 66988208 66988246 -77294243 + (T)n Simple_repeat Simple_repeat 1 38 0 317 248 90 8 chr12 66988664 66988797 -77293692 + MER53 DNA DNA 22 165 -24 29 60 0 0 chr12 66989277 66989327 -77293162 + AT_rich Low_complexity Low_complexity 1 50 0 273 57 0 0 chr12 66989549 66989584 -77292905 + (CA)n Simple_repeat Simple_repeat 2 36 0 358 333 37 65 chr12 66990170 66990494 -77291995 - L2 LINE L2 -13 3300 2986 22 35 0 0 chr12 66990814 66990843 -77291646 + AT_rich Low_complexity Low_complexity 1 29 0 1283 168 40 20 chr12 66990909 66991159 -77291330 + AluJo SINE Alu 34 288 -24 28 48 0 0 chr12 66992941 66992983 -77289506 + AT_rich Low_complexity Low_complexity 1 42 0 36 94 0 0 chr12 66993082 66993188 -77289301 + AT_rich Low_complexity Low_complexity 1 106 0 612 222 21 28 chr12 66994786 66994930 -77287559 - MIR SINE MIR -99 163 21 405 0 0 0 chr12 66995805 66995850 -77286639 + (CA)n Simple_repeat Simple_repeat 2 46 0 1792 104 4 4 chr12 66995866 66996117 -77286372 - AluSp SINE Alu -16 297 47 25 0 0 0 chr12 66996537 66996562 -77285927 + AT_rich Low_complexity Low_complexity 1 25 0 1415 235 17 20 chr12 66997734 66998079 -77284410 - L1MC3 LINE L1 -198 7587 7244 519 213 8 47 chr12 66998116 66998243 -77284246 - L1M2 LINE L1 -567 5745 5624 927 169 34 6 chr12 66998255 66998432 -77284057 + MER2 DNA MER2_type 151 332 -13 719 222 26 31 chr12 66998454 66998648 -77283841 + L1MA9 LINE L1 6082 6274 -38 251 248 50 30 chr12 66999406 66999507 -77282982 + HERVL LTR ERVL 3938 4040 -1614 252 0 0 0 chr12 67000437 67000465 -77282024 + (TC)n Simple_repeat Simple_repeat 2 29 0 3359 169 66 2 chr12 67000692 67001326 -77281163 - HSMAR2 DNA Mariner 0 1302 628 6182 126 15 9 chr12 67001342 67002320 -77280169 - L1MA2 LINE L1 0 6304 5321 4887 156 10 15 chr12 67002469 67003698 -77278791 - L1PA14 LINE L1 -18 6143 4910 1151 194 148 28 chr12 67003698 67004023 -77278466 + THE1B LTR MaLR 1 364 0 4887 156 10 15 chr12 67004023 67004598 -77277891 - L1PA14 LINE L1 -1251 4910 4334 2283 117 20 3 chr12 67004601 67004951 -77277538 - THE1C LTR MaLR -19 356 1 4850 187 7 15 chr12 67004951 67005907 -77276582 - L1PA14 LINE L1 -1804 4342 3394 1312 162 29 3 chr12 67005901 67006236 -77276253 + L1MA10 LINE L1 5625 5909 -259 * 862 186 35 44 chr12 67006233 67006459 -77276030 + L1MA9 LINE L1 5793 6016 -296 * 5378 43 1 3 chr12 67006445 67007116 -77275373 - L1PA3 LINE L1 -902 5244 4575 7422 33 3 0 chr12 67007116 67007994 -77274495 + L1PA3 LINE L1 5255 6154 -1 1151 180 31 20 chr12 67007994 67008288 -77274201 + L1MA9 LINE L1 6007 6303 -9 2020 205 63 39 chr12 67008372 67008909 -77273580 - L1MA10 LINE L1 -278 5890 5341 1960 201 25 35 chr12 67008896 67009378 -77273111 + L1MA10 LINE L1 5858 6334 0 * 2319 103 0 19 chr12 67009966 67010285 -77272204 - AluSq SINE Alu 0 313 1 2018 103 6 60 chr12 67011720 67012039 -77270450 - AluSg SINE Alu -8 302 1 545 232 132 37 chr12 67012970 67013242 -77269247 - LTR37A LTR ERV1 -51 375 78 23 54 0 0 chr12 67013435 67013472 -77269017 + AT_rich Low_complexity Low_complexity 1 37 0 377 294 14 27 chr12 67014795 67014941 -77267548 + L2 LINE L2 3168 3311 -2 57 0 0 0 chr12 67014945 67015002 -77267487 + AT_rich Low_complexity Low_complexity 1 57 0 1150 161 0 0 chr12 67015182 67015381 -77267108 + L1PB1 LINE L1 1 199 -6664 13502 195 32 19 chr12 67015384 67018908 -77263581 + L1PB1 LINE L1 636 4112 -2755 2180 136 0 0 chr12 67018908 67019216 -77263273 + AluSq SINE Alu 1 308 -5 13502 195 32 19 chr12 67019216 67021306 -77261183 + L1PB1 LINE L1 4112 6507 -360 198 0 0 0 chr12 67021306 67021328 -77261161 + (CA)n Simple_repeat Simple_repeat 2 23 0 13502 195 32 19 chr12 67021328 67021692 -77260797 + L1PB1 LINE L1 6507 6865 -2 11595 194 19 11 chr12 67022403 67024976 -77257513 - L1MA1 LINE L1 0 6302 3692 180 0 0 0 chr12 67024976 67024996 -77257493 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 11595 194 19 11 chr12 67024996 67025909 -77256580 - L1MA1 LINE L1 -2610 3692 2788 903 253 18 47 chr12 67025920 67026260 -77256229 + L1MA9 LINE L1 5944 6273 -39 6603 160 57 34 chr12 67027203 67028531 -77253958 - Tigger1 DNA MER2_type 0 2418 1061 1158 130 9 60 chr12 67028537 67028752 -77253737 - AluSg/x SINE Alu -5 305 102 299 289 0 22 chr12 67028753 67028843 -77253646 - MLT1F1 LTR MaLR -456 111 24 1313 158 33 97 chr12 67028843 67029205 -77253284 - L1MC3 LINE L1 -700 7085 6747 280 281 24 0 chr12 67029310 67029392 -77253097 + MLT1E LTR MaLR 506 589 -4 399 333 48 0 chr12 67029914 67030061 -77252428 + MIR SINE MIR 109 262 0 21 57 0 0 chr12 67030236 67030271 -77252218 + AT_rich Low_complexity Low_complexity 1 35 0 4015 191 129 20 chr12 67031336 67032693 -77249796 + MER52A LTR ERV1 17 1755 0 223 286 0 0 chr12 67033169 67033232 -77249257 + MIR SINE MIR 184 246 -16 1016 202 20 8 chr12 67033395 67033643 -77248846 + L1PA13 LINE L1 5058 5308 -838 776 223 70 37 chr12 67033661 67033934 -77248555 + HAL1 LINE L1 2220 2501 -6 4938 139 34 17 chr12 67033937 67034802 -77247687 + L1PA13 LINE L1 5285 6163 0 2194 80 3 6 chr12 67034809 67035121 -77247368 + AluY SINE Alu 1 311 0 324 138 0 0 chr12 67035121 67035174 -77247315 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 240 324 63 0 chr12 67035294 67035405 -77247084 + MER20B DNA MER1_type 47 164 -619 180 0 0 0 chr12 67036991 67037011 -77245478 + (T)n Simple_repeat Simple_repeat 1 20 0 1193 239 105 40 chr12 67038355 67038910 -77243579 + L1MEc LINE L1 1166 1850 -4576 258 272 0 0 chr12 67038916 67038997 -77243492 + L1MC3 LINE L1 7005 7085 -700 285 282 29 10 chr12 67038997 67039100 -77243389 + MLT1F1 LTR MaLR 24 128 -439 1975 148 0 3 chr12 67039124 67039421 -77243068 - AluSx SINE Alu -16 296 1 2386 222 3 16 chr12 67039499 67040071 -77242418 + L1MC3 LINE L1 7204 7768 -17 1687 215 27 11 chr12 67041363 67041730 -77240759 - MER39 LTR ERV1 -25 682 310 214 300 55 55 chr12 67092404 67092514 -77189975 - L2 LINE L2 -2 3311 3202 1175 118 6 0 chr12 67092515 67092676 -77189813 + AluSp SINE Alu 125 286 -27 2560 310 99 29 chr12 67092686 67094104 -77188385 - L2 LINE L2 -78 3235 1717 558 276 52 72 chr12 67094210 67094500 -77187989 - L1ME3A LINE L1 -209 5961 5678 1107 209 64 15 chr12 67094513 67094548 -77187941 + MLT2B2 LTR ERVL 5 37 -483 1571 170 54 0 chr12 67094548 67094661 -77187828 + AluJo SINE Alu 9 114 -202 224 30 30 0 chr12 67094661 67094694 -77187795 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1571 170 54 0 chr12 67094694 67094874 -77187615 + AluJo SINE Alu 114 316 0 1107 209 64 15 chr12 67094874 67095092 -77187397 + MLT2B2 LTR ERVL 37 281 -239 1165 263 62 29 chr12 67095170 67095718 -77186771 - L1ME LINE L1 -2893 3187 2622 229 324 0 14 chr12 67095825 67095899 -77186590 - L1ME LINE L1 -5621 449 377 1104 355 154 8 chr12 67096289 67097021 -77185468 - L2 LINE L2 -1637 1677 839 285 109 0 0 chr12 67097090 67097136 -77185353 + (TG)n Simple_repeat Simple_repeat 2 47 0 22 56 0 0 chr12 67097717 67097753 -77184736 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr12 67097852 67097876 -77184613 + AT_rich Low_complexity Low_complexity 1 24 0 1288 192 21 34 chr12 67097882 67098173 -77184316 + AluJo SINE Alu 1 287 -25 1851 154 6 13 chr12 67098181 67098492 -77183997 + AluSx SINE Alu 1 309 -3 231 304 136 26 chr12 67098898 67099207 -77183282 - L1M4 LINE L1 -1147 4999 4657 566 120 33 0 chr12 67099209 67099301 -77183188 - L1MA3 LINE L1 0 6305 6211 263 179 0 0 chr12 67099363 67099402 -77183087 + LTR51 LTR ERV1 69 107 -564 291 28 0 0 chr12 67099404 67099440 -77183049 + (CA)n Simple_repeat Simple_repeat 2 37 0 468 126 0 0 chr12 67099440 67099527 -77182962 + (TA)n Simple_repeat Simple_repeat 2 88 0 2343 173 24 20 chr12 67099528 67099984 -77182505 + MLT2C2 LTR ERVL 2 459 -5 22 0 0 0 chr12 67100628 67100650 -77181839 + AT_rich Low_complexity Low_complexity 1 22 0 1710 153 38 7 chr12 67100779 67101067 -77181422 + AluSx SINE Alu 5 301 -11 1165 141 155 135 chr12 67101465 67101806 -77180683 + Tigger3(Golem) DNA MER2_type 1 3029 0 2177 119 3 0 chr12 67101952 67102263 -77180226 + AluSx SINE Alu 1 312 0 220 139 23 0 chr12 67104339 67104382 -77178107 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1395 216 28 40 chr12 67104456 67104808 -77177681 + MSTB1 LTR MaLR 85 432 0 188 135 27 0 chr12 67104811 67104848 -77177641 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 1024 261 47 49 chr12 67105107 67105555 -77176934 - L1ME1 LINE L1 -4 6162 5716 983 271 101 19 chr12 67105600 67106164 -77176325 - L1ME1 LINE L1 -1112 5034 4425 501 131 0 24 chr12 67106175 67106259 -77176230 + AluSq/x SINE Alu 47 128 -184 4021 109 14 40 chr12 67106373 67107058 -77175431 + L1PA8 LINE L1 5526 6193 0 1564 227 37 9 chr12 67107085 67107521 -77174968 + L1 LINE L1 4934 5381 -765 5377 127 20 2 chr12 67107536 67108372 -77174117 - L1PA8 LINE L1 0 6172 5322 3688 72 0 4 chr12 67108372 67108861 -77173628 - L1PA7 LINE L1 -3 6151 5665 5401 110 0 0 chr12 67108861 67109633 -77172856 + L1P LINE L1 3691 4462 -1684 5101 136 2 29 chr12 67109632 67110557 -77171932 - L1PA8 LINE L1 -816 5330 4431 * 26 0 0 0 chr12 67111536 67111562 -77170927 + AT_rich Low_complexity Low_complexity 1 26 0 1828 159 7 0 chr12 67111719 67112046 -77170443 + AluSx SINE Alu 1 329 0 802 41 0 0 chr12 67113653 67113750 -77168739 + L1PA3 LINE L1 2 98 -6048 * 23048 41 22 2 chr12 67113717 67119140 -77163349 + L1PA3 LINE L1 578 6151 -4 201 182 0 0 chr12 67119143 67119198 -77163291 + A-rich Low_complexity Low_complexity 1 55 0 386 286 25 8 chr12 67119658 67119777 -77162712 - L2 LINE L2 -5 3308 3188 248 331 107 8 chr12 67120445 67120566 -77161923 - MIR SINE MIR -57 205 73 1573 259 65 36 chr12 67120921 67121526 -77160963 + MLT1E2 LTR MaLR 5 626 0 206 364 11 11 chr12 67121796 67121884 -77160605 - MIR3 SINE MIR -3 205 118 22 35 0 0 chr12 67123625 67123654 -77158835 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr12 67123677 67123700 -77158789 + AT_rich Low_complexity Low_complexity 1 23 0 304 291 66 46 chr12 67123901 67124052 -77158437 + L1ME2 LINE L1 114 267 -6129 259 356 9 26 chr12 67124157 67124272 -77158217 + L1ME2 LINE L1 333 445 -5951 316 272 35 43 chr12 67124628 67124885 -77157604 + L1ME2 LINE L1 811 1065 -5331 1954 154 0 13 chr12 67126064 67126370 -77156119 - AluSx SINE Alu -10 302 1 1615 264 33 95 chr12 67126399 67126450 -77156039 - MLT1E LTR MaLR 0 593 540 4012 127 74 9 chr12 67126450 67127209 -77155280 - L1MA6 LINE L1 -1 6299 5492 1615 264 33 95 chr12 67127209 67127789 -77154700 - MLT1E LTR MaLR -53 540 1 490 250 109 2 chr12 67128780 67128975 -77153514 + L1ME2 LINE L1 2736 2950 -3265 28164 132 12 23 chr12 67128977 67130317 -77152172 - L1PA8 LINE L1 -8 6479 5127 189 0 0 0 chr12 67130317 67130338 -77152151 + (TTCTG)n Simple_repeat Simple_repeat 4 24 0 28164 132 12 23 chr12 67130338 67132809 -77149680 - L1PA8 LINE L1 -1360 5127 2632 297 0 0 0 chr12 67132809 67132842 -77149647 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 28164 132 12 23 chr12 67132842 67135061 -77147428 - L1PA8 LINE L1 -3855 2632 407 258 56 0 0 chr12 67135061 67135097 -77147392 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 28164 132 12 23 chr12 67135097 67135150 -77147339 - L1PA8 LINE L1 -6080 407 355 638 267 15 37 chr12 67135138 67135408 -77147081 + L1ME2 LINE L1 2924 3187 -3028 * 803 269 52 17 chr12 67135425 67135771 -77146718 + L1ME2 LINE L1 5674 6031 -202 3075 149 8 4 chr12 67136015 67136526 -77145963 + MER75 DNA T2_type 1 513 -1 424 300 73 17 chr12 67137158 67137515 -77144974 + L1MEc LINE L1 3114 3490 -2725 532 100 59 6 chr12 67137574 67137744 -77144745 + (TA)n Simple_repeat Simple_repeat 2 180 0 44 0 0 0 chr12 67137748 67137792 -77144697 + AT_rich Low_complexity Low_complexity 1 44 0 2540 271 63 27 chr12 67137906 67139096 -77143393 - L1M4 LINE L1 -1736 4410 3178 * 2949 183 55 68 chr12 67139093 67140077 -77142412 - L1MB5 LINE L1 -144 6030 5070 962 34 0 0 chr12 67140182 67140299 -77142190 - L1PA5 LINE L1 0 6154 6038 22 35 0 0 chr12 67140437 67140466 -77142023 + AT_rich Low_complexity Low_complexity 1 29 0 296 214 39 29 chr12 67140983 67141086 -77141403 + L1MEd LINE L1 823 926 -5279 189 0 0 0 chr12 67141197 67141218 -77141271 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 322 135 0 40 chr12 67141328 67141402 -77141087 + (GAAAA)n Simple_repeat Simple_repeat 2 72 0 237 296 12 0 chr12 67141431 67141512 -77140977 + L1MEd LINE L1 1512 1593 -4803 591 384 34 38 chr12 67141532 67142090 -77140399 + HERV16 LTR ERVL 1014 1569 -3427 770 271 0 39 chr12 67142216 67142419 -77140070 + MLT2D LTR ERVL 220 414 0 747 331 54 21 chr12 67142436 67142808 -77139681 + HERV16 LTR ERVL 1906 2289 -2707 524 318 208 29 chr12 67143484 67144197 -77138292 - L2 LINE L2 -134 3179 2343 381 43 0 0 chr12 67144224 67144271 -77138218 + (CA)n Simple_repeat Simple_repeat 2 48 0 30507 38 1 0 chr12 67144396 67148949 -77133540 + L1PA3 LINE L1 1617 6173 0 3323 202 7 4 chr12 67149283 67150006 -77132483 + L1PB3 LINE L1 4557 5281 -865 429 228 0 10 chr12 67150025 67150126 -77132363 + L1PB3 LINE L1 5963 6062 -92 3351 143 86 9 chr12 67150127 67150926 -77131563 + L1PB3 LINE L1 5287 6166 0 22 35 0 0 chr12 67151011 67151040 -77131449 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr12 67152511 67152549 -77129940 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr12 67153194 67153223 -77129266 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 67153368 67153400 -77129089 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr12 67153593 67153628 -77128861 + AT_rich Low_complexity Low_complexity 1 35 0 238 349 89 7 chr12 67153832 67153978 -77128511 + MIR SINE MIR 89 246 -16 21 0 0 0 chr12 67154330 67154351 -77128138 + AT_rich Low_complexity Low_complexity 1 21 0 322 373 67 47 chr12 67155660 67155934 -77126555 + HERV16 LTR ERVL 2702 2990 -2495 2648 94 14 6 chr12 67155934 67156295 -77126194 - THE1B LTR MaLR 0 364 1 322 373 67 47 chr12 67156295 67156470 -77126019 + HERV16 LTR ERVL 2990 3160 -2325 2135 129 0 3 chr12 67156946 67157255 -77125234 - AluSq SINE Alu -2 311 4 1212 322 67 39 chr12 67157302 67158282 -77124207 + HERV16 LTR ERVL 3409 4416 -580 1184 295 62 29 chr12 67158705 67159153 -77123336 + LTR16B LTR ERVL 2 464 0 321 218 0 0 chr12 67159730 67159808 -77122681 + GA-rich Low_complexity Low_complexity 6 83 0 420 296 41 46 chr12 67160024 67160220 -77122269 + L1ME3A LINE L1 5762 5956 -214 21 0 0 0 chr12 67160500 67160521 -77121968 + AT_rich Low_complexity Low_complexity 1 21 0 27663 49 2 2 chr12 67161301 67165581 -77116908 + L1PA4 LINE L1 1872 6149 -6 3955 33 0 10 chr12 67165673 67166159 -77116330 - L1PA2 LINE L1 0 6155 5675 12593 220 41 26 chr12 67167494 67171423 -77111066 - L1MA7 LINE L1 -2 7708 3655 2091 216 54 30 chr12 67171423 67171964 -77110525 + MLT2B3 LTR ERVL 1 554 0 12593 220 41 26 chr12 67171964 67173184 -77109305 - L1MA7 LINE L1 -4055 3655 2454 306 351 69 22 chr12 67173774 67174005 -77108484 - MIR SINE MIR -4 258 17 241 0 0 0 chr12 67175024 67175055 -77107434 + L1P LINE L1 5029 5059 -1087 * 608 84 0 0 chr12 67175054 67175137 -77107352 - L1PB1 LINE L1 -172 5979 5897 1163 206 32 12 chr12 67175137 67175398 -77107091 - MSTC LTR MaLR -8 449 155 3096 106 9 6 chr12 67175398 67176162 -77106327 + L1P3 LINE L1 5053 5819 -335 6160 227 19 46 chr12 67176174 67178514 -77103975 + L1P4 LINE L1 2 2624 -3837 5640 38 1 0 chr12 67178511 67179197 -77103292 - L1PA3 LINE L1 -1538 4608 3922 * 7588 26 2 0 chr12 67179197 67180741 -77101748 + L1PA3 LINE L1 4605 6151 -4 10257 141 17 13 chr12 67181069 67182886 -77099603 + L1P4 LINE L1 2591 4415 -2046 1578 97 5 7 chr12 67182889 67183237 -77099252 + L1P4 LINE L1 5465 5812 -671 30 27 0 0 chr12 67183392 67183429 -77099060 + AT_rich Low_complexity Low_complexity 1 37 0 527 124 44 8 chr12 67183438 67183787 -77098702 + (TA)n Simple_repeat Simple_repeat 1 361 0 26 0 0 0 chr12 67183807 67183833 -77098656 + AT_rich Low_complexity Low_complexity 1 26 0 1951 142 0 3 chr12 67183931 67184220 -77098269 + AluSx SINE Alu 1 288 -24 319 289 44 0 chr12 67184359 67184494 -77097995 + L1M4 LINE L1 3679 3819 -2327 357 43 0 0 chr12 67184582 67184629 -77097860 + (CA)n Simple_repeat Simple_repeat 2 48 0 207 0 0 0 chr12 67184628 67184651 -77097838 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 184 135 68 0 chr12 67184737 67184811 -77097678 + (TA)n Simple_repeat Simple_repeat 1 79 0 2423 148 0 3 chr12 67184893 67185266 -77097223 + THE1C LTR MaLR 4 375 0 8928 153 41 5 chr12 67185266 67186790 -77095699 + THE1C-int LTR MaLR 1 1580 0 2713 110 3 3 chr12 67186790 67187163 -77095326 + THE1C LTR MaLR 1 373 -2 22 56 0 0 chr12 67187443 67187479 -77095010 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr12 67188036 67188058 -77094431 + AT_rich Low_complexity Low_complexity 1 22 0 3351 50 0 2 chr12 67188703 67189125 -77093364 - L1PA5 LINE L1 0 6154 5734 987 123 16 13 chr12 67189125 67189293 -77093196 + L1ME LINE L1 5583 5752 -418 33 25 0 0 chr12 67189563 67189603 -77092886 + AT_rich Low_complexity Low_complexity 1 40 0 33 56 0 0 chr12 67189627 67189681 -77092808 + AT_rich Low_complexity Low_complexity 1 54 0 8400 182 40 16 chr12 67190867 67192270 -77090219 + L1MA4 LINE L1 3593 5085 -1215 2285 107 0 0 chr12 67192270 67192578 -77089911 + AluSx SINE Alu 1 308 -4 8400 182 40 16 chr12 67192578 67193569 -77088920 + L1MA4 LINE L1 5085 6050 -250 1500 242 37 8 chr12 67193898 67194253 -77088236 - MLT1A1 LTR MaLR 0 365 1 198 327 135 19 chr12 67194297 67194401 -77088088 + MIR SINE MIR 12 127 -135 271 207 69 0 chr12 67195916 67195974 -77086515 - L1M4 LINE L1 -3128 3018 2957 249 33 0 0 chr12 67196214 67196244 -77086245 + (CA)n Simple_repeat Simple_repeat 2 31 0 16714 35 7 0 chr12 67196880 67199684 -77082805 - L1PA4 LINE L1 0 6155 3333 1467 160 19 19 chr12 67200118 67200380 -77082109 - L1PA15 LINE L1 -22 6143 5882 1105 115 149 5 chr12 67201327 67201535 -77080954 - L1M2 LINE L1 -719 5572 5335 4347 214 67 12 chr12 67201964 67203656 -77078833 + L1MA10 LINE L1 4538 6332 -2 198 0 0 0 chr12 67203900 67203922 -77078567 + (CA)n Simple_repeat Simple_repeat 2 23 0 225 247 99 0 chr12 67203922 67204003 -77078486 - L1MC4 LINE L1 -1339 6703 6615 412 148 0 0 chr12 67205062 67205123 -77077366 + AluS SINE Alu 1 61 -248 689 183 15 22 chr12 67205130 67205267 -77077222 + AluJb SINE Alu 168 303 -9 268 227 40 40 chr12 67205604 67205679 -77076810 + MER116 DNA Mariner 5 79 -1 661 203 16 27 chr12 67207079 67207266 -77075223 + L1M4 LINE L1 1028 1212 -5330 408 252 49 56 chr12 67207319 67207462 -77075027 + MER82 DNA MER2_type 2 143 -510 477 125 23 0 chr12 67207778 67207866 -77074623 - L1MC2 LINE L1 0 6344 6255 3386 212 16 20 chr12 67207868 67208610 -77073879 - L1MC2 LINE L1 -202 6142 5404 1839 241 38 9 chr12 67208761 67209210 -77073279 + MER82 DNA MER2_type 192 653 0 2657 212 12 0 chr12 67209382 67209944 -77072545 - L1MEc LINE L1 -1724 5124 4556 1520 176 33 19 chr12 67209946 67210253 -77072236 + L1PA16 LINE L1 5856 6166 0 534 215 160 0 chr12 67210253 67210397 -77072092 + L1M4 LINE L1 1356 1522 -5020 225 0 0 0 chr12 67210434 67210459 -77072030 + (CA)n Simple_repeat Simple_repeat 1 25 0 204 268 0 0 chr12 67210475 67210516 -77071973 + L2 LINE L2 3186 3226 -87 339 341 100 35 chr12 67210760 67211021 -77071468 - HAL1b LINE L1 -1063 285 8 1614 86 0 9 chr12 67211067 67211287 -77071202 + AluSg/x SINE Alu 82 299 -13 3543 243 45 12 chr12 67211992 67213362 -77069127 - L1MEc LINE L1 -2879 3969 2551 7722 274 43 49 chr12 67213909 67214410 -77068079 + L1M3d LINE L1 5 508 -6224 1412 200 73 0 chr12 67214410 67214685 -77067804 + AluJo SINE Alu 2 296 -16 7722 274 43 49 chr12 67214685 67217654 -77064835 + L1M3d LINE L1 508 2365 -4367 6829 69 6 0 chr12 67217727 67218999 -77063490 + L1PA7 LINE L1 4877 6153 -1 24 32 0 0 chr12 67219084 67219115 -77063374 + AT_rich Low_complexity Low_complexity 1 31 0 3452 211 15 45 chr12 67219214 67220731 -77061758 + L1MA5 LINE L1 4564 6029 -271 899 248 53 26 chr12 67220767 67221146 -77061343 - L1MEc LINE L1 -5159 1870 1482 453 329 56 5 chr12 67221145 67221361 -77061128 - L1MEc LINE L1 -5823 1206 980 * 367 279 110 19 chr12 67221361 67221515 -77060974 - LTR40a LTR ERVL -351 168 1 295 410 60 26 chr12 67221515 67221853 -77060636 + L2 LINE L2 2543 2904 -409 1837 142 29 0 chr12 67221853 67222134 -77060355 + AluSx SINE Alu 3 291 -21 295 410 60 26 chr12 67222134 67222278 -77060211 + L2 LINE L2 2904 3042 -271 186 103 0 0 chr12 67222364 67222393 -77060096 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 35 63 0 0 chr12 67222489 67222552 -77059937 + AT_rich Low_complexity Low_complexity 1 63 0 365 307 13 92 chr12 67222690 67222918 -77059571 - L2 LINE L2 -49 3264 3055 3366 203 76 21 chr12 67222938 67223921 -77058568 + L1MB2 LINE L1 5113 6144 -27 1409 181 20 4 chr12 67224049 67224454 -77058035 - LTR69 LTR ERVL -115 473 1 240 219 151 14 chr12 67224463 67224536 -77057953 + L1MEc LINE L1 2330 2412 -3984 552 201 41 108 chr12 67224537 67224639 -77057850 + MLT1C LTR MaLR 2 86 -381 2048 131 3 22 chr12 67224639 67224953 -77057536 - AluSx SINE Alu -4 308 1 552 201 41 108 chr12 67224953 67225044 -77057445 + MLT1C LTR MaLR 86 182 -285 * 554 201 45 22 chr12 67225034 67225168 -77057321 - MLT1A1 LTR MaLR -189 176 40 425 211 0 81 chr12 67225215 67225338 -77057151 - L1 LINE L1 -1795 4351 4239 672 280 70 23 chr12 67225369 67225626 -77056863 + MLT1C LTR MaLR 199 467 0 1566 165 91 26 chr12 67225707 67226047 -77056442 + MLT1A1 LTR MaLR 1 362 -3 189 0 0 0 chr12 67226048 67226069 -77056420 + (CA)n Simple_repeat Simple_repeat 1 21 0 195 42 0 0 chr12 67226092 67226116 -77056373 + (TA)n Simple_repeat Simple_repeat 1 24 0 831 218 32 8 chr12 67226180 67226432 -77056057 + L1M4 LINE L1 4970 5227 -919 422 143 11 0 chr12 67226432 67226523 -77055966 + (TA)n Simple_repeat Simple_repeat 2 93 0 1567 274 45 10 chr12 67226525 67227142 -77055347 + L1MEc LINE L1 2464 3102 -3113 1332 233 41 16 chr12 67227147 67227589 -77054900 + L1M4 LINE L1 4935 5387 -759 690 189 0 0 chr12 67227912 67228034 -77054455 - FLAM_C SINE Alu -11 122 1 312 244 12 0 chr12 67228577 67228663 -77053826 + (CAT)n Simple_repeat Simple_repeat 2 88 0 206 337 0 54 chr12 67228976 67229068 -77053421 + L2 LINE L2 3186 3272 0 215 356 104 0 chr12 67229578 67229693 -77052796 + MIR SINE MIR 71 197 -65 2240 128 24 19 chr12 67229777 67230191 -77052298 + L1MA5A LINE L1 5876 6291 -6 251 236 0 11 chr12 67230696 67230785 -77051704 + (TATATG)n Simple_repeat Simple_repeat 3 90 0 29 60 0 0 chr12 67230794 67230844 -77051645 + AT_rich Low_complexity Low_complexity 1 50 0 547 302 33 11 chr12 67232563 67232745 -77049744 - MLT1I LTR MaLR -116 293 108 220 250 31 21 chr12 67233128 67233224 -77049265 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 * 249 154 46 15 chr12 67233160 67233225 -77049264 + (TA)n Simple_repeat Simple_repeat 1 67 0 3711 174 18 0 chr12 67234496 67235182 -77047307 - L1PA13 LINE L1 -2 6161 5464 1268 123 11 0 chr12 67235182 67235369 -77047120 - THE1B-int LTR MaLR -1391 189 1 2221 149 5 19 chr12 67235369 67235738 -77046751 - THE1B LTR MaLR 0 364 1 659 310 48 0 chr12 67235738 67235925 -77046564 + L1PA12 LINE L1 338 533 -7048 * 4024 90 4 11 chr12 67235921 67236468 -77046021 + THE1B-int LTR MaLR 150 692 -888 * 4215 131 34 0 chr12 67236467 67237094 -77045395 + THE1B-int LTR MaLR 933 1580 0 2114 139 31 19 chr12 67237094 67237454 -77045035 + THE1B LTR MaLR 1 364 0 839 258 153 7 chr12 67237457 67237744 -77044745 - L1PA12 LINE L1 -7242 339 11 1986 138 7 0 chr12 67237918 67238209 -77044280 - AluSg SINE Alu -17 293 1 515 359 33 9 chr12 67238275 67238487 -77044002 - MIR SINE MIR -34 228 12 229 350 177 27 chr12 67238887 67239073 -77043416 + MIR SINE MIR 41 254 -8 23 0 0 0 chr12 67239113 67239136 -77043353 + AT_rich Low_complexity Low_complexity 1 23 0 1703 178 154 5 chr12 67239165 67239535 -77042954 - MSTA LTR MaLR -3 425 1 1381 221 7 26 chr12 67239620 67239923 -77042566 + AluJb SINE Alu 1 297 -15 2947 106 7 0 chr12 67240427 67240841 -77041648 - LTR3 LTR ERVK -9 423 7 726 340 37 3 chr12 67240933 67241227 -77041262 + MLT1I LTR MaLR 106 409 0 27 81 0 0 chr12 67241255 67241317 -77041172 + AT_rich Low_complexity Low_complexity 1 62 0 2375 41 0 0 chr12 67241450 67241740 -77040749 - L1PA4 LINE L1 0 6155 5866 505 335 113 43 chr12 67242076 67242473 -77040016 - L2 LINE L2 0 3313 2889 210 328 48 32 chr12 67242559 67242684 -77039805 - L2 LINE L2 -540 2774 2648 219 253 48 12 chr12 67243440 67243523 -77038966 + MIR SINE MIR 167 252 -10 1343 191 97 29 chr12 67243610 67243961 -77038528 + THE1C LTR MaLR 1 375 0 8645 159 7 44 chr12 67243963 67245601 -77036888 + THE1C-int LTR MaLR 3 1580 0 1191 199 80 42 chr12 67245601 67245962 -77036527 + THE1C LTR MaLR 1 375 0 3657 269 40 36 chr12 67246009 67247811 -77034678 + L1MA5A LINE L1 63 2089 -4760 358 185 11 11 chr12 67247812 67247904 -77034585 + GA-rich Low_complexity Low_complexity 3 94 0 2255 262 35 7 chr12 67247905 67248843 -77033646 + L1MA5A LINE L1 2050 3065 -3783 1250 61 12 0 chr12 67248855 67249050 -77033439 + AluYa5 SINE Alu 119 315 0 1380 246 26 3 chr12 67249050 67249400 -77033089 + L1MA5A LINE L1 3086 3443 -3405 2767 182 2 0 chr12 67249442 67249892 -77032597 + L1PA16 LINE L1 1 451 -6398 3768 194 19 6 chr12 67249895 67251429 -77031060 + L1PA16 LINE L1 5058 6611 -258 1380 199 15 0 chr12 67251696 67251968 -77030521 + L1PA16 LINE L1 6591 6866 -3 1198 258 0 3 chr12 67251969 67252298 -77030191 + L1MA5A LINE L1 3473 3800 -3048 21152 195 29 23 chr12 67252308 67259029 -77023460 + L1PA11 LINE L1 10 7612 0 6499 204 45 12 chr12 67259053 67260030 -77022459 + L1MA5A LINE L1 3824 4768 -2231 261 0 0 0 chr12 67260030 67260059 -77022430 + (CA)n Simple_repeat Simple_repeat 2 30 0 6499 204 45 12 chr12 67260059 67262052 -77020437 + L1MA5A LINE L1 4768 6999 0 187 307 102 36 chr12 67262101 67262238 -77020251 - MIR SINE MIR -109 153 8 186 254 18 0 chr12 67262749 67262804 -77019685 + L2 LINE L2 3257 3312 -1 366 240 74 16 chr12 67263476 67263597 -77018892 - MER69 DNA AcHobo -1097 129 2 1471 117 4 4 chr12 67264474 67264704 -77017785 + L1PA13 LINE L1 5929 6158 -5 2490 18 0 0 chr12 67265824 67266102 -77016387 - AluYb8 SINE Alu -6 312 35 21 36 0 0 chr12 67266203 67266231 -77016258 + AT_rich Low_complexity Low_complexity 1 28 0 37 23 0 0 chr12 67267069 67267113 -77015376 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 67268750 67268773 -77013716 + AT_rich Low_complexity Low_complexity 1 23 0 1993 123 7 10 chr12 67268936 67269228 -77013261 + AluSx SINE Alu 1 291 -21 267 368 77 11 chr12 67269441 67269623 -77012866 + MIR SINE MIR 57 250 -12 24 0 0 0 chr12 67269730 67269754 -77012735 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr12 67269946 67269980 -77012509 + AT_rich Low_complexity Low_complexity 1 34 0 377 269 74 46 chr12 67270734 67270909 -77011580 + MIR SINE MIR 81 260 -2 2159 145 99 8 chr12 67272528 67272920 -77009569 - MSTA LTR MaLR 0 428 1 288 240 48 10 chr12 67273069 67273173 -77009316 + L1MCc LINE L1 37 144 -6279 440 172 11 43 chr12 67273261 67273354 -77009135 + MLT1D LTR MaLR 1 90 -415 * 941 267 23 14 chr12 67273348 67273642 -77008847 + MLT1D LTR MaLR 228 503 -2 2474 60 0 0 chr12 67274024 67274324 -77008165 - AluY SINE Alu -11 300 1 1286 278 62 6 chr12 67274399 67274928 -77007561 + L1M4 LINE L1 2216 2774 -3372 711 277 45 40 chr12 67274963 67275316 -77007173 + L1M4 LINE L1 2918 3268 -2878 1856 149 17 14 chr12 67275316 67275645 -77006844 + AluSx SINE Alu 3 312 0 711 277 45 40 chr12 67275645 67275910 -77006579 + L1M4 LINE L1 3268 3692 -2454 293 306 46 0 chr12 67275946 67276054 -77006435 - MER58B DNA MER1_type -23 318 206 340 230 96 24 chr12 67276082 67276291 -77006198 + L1M4 LINE L1 4268 4491 -1655 606 280 97 11 chr12 67276330 67276613 -77005876 + L1MC4a LINE L1 6339 6634 -1151 556 268 0 0 chr12 67276619 67276741 -77005748 + MLT1F1 LTR MaLR 1 122 -445 2978 167 13 13 chr12 67276741 67276813 -77005676 + LTR10A LTR ERV1 1 72 -561 2439 93 3 0 chr12 67276813 67277123 -77005366 - AluSx SINE Alu -1 311 1 2978 167 13 13 chr12 67277123 67277624 -77004865 + LTR10A LTR ERV1 72 620 -13 1588 227 65 20 chr12 67277624 67278083 -77004406 + L1MD3 LINE L1 7409 7888 -107 26 50 0 0 chr12 67278794 67278834 -77003655 + AT_rich Low_complexity Low_complexity 1 40 0 1885 223 12 48 chr12 67279013 67279497 -77002992 + MLT1C LTR MaLR 1 467 0 2220 205 48 67 chr12 67279805 67280429 -77002060 + LTR9 LTR ERV1 1 612 0 1808 223 16 10 chr12 67280429 67280815 -77001674 + HUERS-P3 LTR ERV1 1 388 -8531 7368 167 33 13 chr12 67280816 67282550 -76999939 + HUERS-P3 LTR ERV1 1235 3284 -5314 * 14945 137 11 2 chr12 67282543 67284769 -76997720 + HUERS-P3 LTR ERV1 4539 6784 -2135 254 105 0 0 chr12 67284870 67284908 -76997581 + LTR9-int LTR ERV1 2003 2040 -6080 1340 169 8 16 chr12 67285233 67285476 -76997013 + LTR9-int LTR ERV1 8679 8919 0 2114 228 36 68 chr12 67285476 67286108 -76996381 + LTR9 LTR ERV1 1 612 0 2124 117 0 3 chr12 67286126 67286417 -76996072 + AluSx SINE Alu 1 290 -22 1465 143 39 0 chr12 67286975 67287205 -76995284 + AluSc SINE Alu 55 293 -16 864 259 9 26 chr12 67287314 67287542 -76994947 + MER58A DNA MER1_type 1 224 0 3470 86 0 4 chr12 67289413 67289878 -76992611 - HERVL-A2 LTR ERVL -5191 463 1 2618 132 76 5 chr12 67289878 67289936 -76992553 - MLT2A2 LTR ERVL 0 453 401 445 32 32 0 chr12 67289936 67289999 -76992490 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2618 132 76 5 chr12 67289999 67290363 -76992126 - MLT2A2 LTR ERVL -52 401 1 1581 206 129 22 chr12 67290597 67290999 -76991490 + MLT2B1 LTR ERVL 1 445 -75 275 182 9 27 chr12 67290999 67291109 -76991380 + (TA)n Simple_repeat Simple_repeat 2 109 0 2709 189 9 11 chr12 67291146 67291674 -76990815 - Tigger1 DNA MER2_type 0 2418 1892 8298 164 30 2 chr12 67291775 67293223 -76989266 - Tigger1 DNA MER2_type -872 1546 58 276 103 0 0 chr12 67293230 67293269 -76989220 + MLT2C1 LTR ERVL 357 395 -2 435 277 75 78 chr12 67293275 67294411 -76988078 + L1ME2 LINE L1 796 1926 -4470 * 1457 139 47 22 chr12 67294407 67294681 -76987808 - L1M1 LINE L1 -768 5535 5255 346 266 19 58 chr12 67294712 67294866 -76987623 + L1ME2 LINE L1 4772 4919 -1296 1577 279 73 29 chr12 67295062 67295789 -76986700 + L1ME2 LINE L1 5469 6227 -6 267 317 0 37 chr12 67297319 67297401 -76985088 + MIR3 SINE MIR 120 198 -10 1568 164 43 15 chr12 67297593 67297922 -76984567 - MER44D DNA MER2_type -1 608 1 1336 222 7 14 chr12 67298313 67298601 -76983888 + AluJo SINE Alu 1 286 -26 23 0 0 0 chr12 67299306 67299329 -76983160 + AT_rich Low_complexity Low_complexity 1 23 0 821 211 0 0 chr12 67299964 67300125 -76982364 - MLT1B LTR MaLR -229 161 1 975 223 27 10 chr12 67300416 67301289 -76981200 - L1MB5 LINE L1 0 6174 5241 3959 168 45 31 chr12 67301293 67302184 -76980305 + MER4D LTR ERV1 1 664 0 6608 74 5 1 chr12 67302279 67303155 -76979334 - L1PA7 LINE L1 0 6154 5276 18263 135 20 46 chr12 67303160 67306605 -76975884 - L1P LINE L1 -2355 3791 434 6092 226 56 33 chr12 67306595 67307957 -76974532 - L1P3 LINE L1 -3817 2644 1206 * 207 100 0 0 chr12 67307957 67307987 -76974502 + (TTG)n Simple_repeat Simple_repeat 1 30 0 6092 226 56 33 chr12 67307987 67309212 -76973277 - L1P3 LINE L1 -5255 1206 10 611 205 83 0 chr12 67309223 67309379 -76973110 - L1M3c LINE L1 -4584 2453 2285 * 617 326 107 21 chr12 67309366 67309694 -76972795 - L1M3c LINE L1 -5168 1862 1507 2524 279 44 100 chr12 67309703 67311551 -76970938 - L1M3e LINE L1 -5284 1746 1 318 329 184 0 chr12 67312143 67312350 -76970139 + L1ME LINE L1 1116 1360 -5056 311 214 93 103 chr12 67312377 67312592 -76969897 + L1ME LINE L1 1232 1448 -5159 3504 153 12 3 chr12 67312592 67313193 -76969296 + L1PB3 LINE L1 5542 6147 -7 311 214 93 103 chr12 67313193 67313454 -76969035 + L1ME LINE L1 1448 1882 -4725 238 277 105 34 chr12 67313794 67314061 -76968428 + L1ME LINE L1 2241 2526 -4081 240 234 86 31 chr12 67314112 67314240 -76968249 + L1ME LINE L1 2560 2694 -3732 27 0 0 0 chr12 67314924 67314951 -76967538 + AT_rich Low_complexity Low_complexity 1 27 0 684 348 33 40 chr12 67315418 67315841 -76966648 - L2 LINE L2 -529 2785 2366 540 329 54 17 chr12 67316511 67316751 -76965738 + MIR SINE MIR 1 249 -13 641 103 27 151 chr12 67316857 67317042 -76965447 + L1MA7 LINE L1 6130 6291 0 988 138 0 0 chr12 67317872 67318017 -76964472 - AluSg/x SINE Alu -11 301 157 3337 232 68 18 chr12 67318144 67318967 -76963522 + L1M2b LINE L1 1 1177 -6032 766 204 0 0 chr12 67318949 67319256 -76963233 + L1ME LINE L1 2731 3166 -3260 * 1025 184 38 11 chr12 67319256 67319441 -76963048 + MSTB LTR MaLR 1 190 -236 830 290 78 6 chr12 67319448 67319779 -76962710 - L1ME1 LINE L1 -63 6103 5749 1574 197 0 0 chr12 67319783 67320073 -76962416 + L1PA16 LINE L1 5858 6147 -19 4745 243 45 69 chr12 67320088 67320884 -76961605 - L1M4c LINE L1 -1611 4771 3958 1907 167 0 0 chr12 67320884 67321171 -76961318 - AluSx SINE Alu -21 291 5 4745 243 45 69 chr12 67321171 67321392 -76961097 - L1M4c LINE L1 -2424 3958 3733 306 0 0 0 chr12 67321392 67321426 -76961063 + (TTA)n Simple_repeat Simple_repeat 3 36 0 4745 243 45 69 chr12 67321426 67322360 -76960129 - L1M4c LINE L1 -2649 3733 2865 5397 161 33 39 chr12 67322414 67323592 -76958897 + MER11C LTR ERVK 1 1071 0 2020 200 29 49 chr12 67323592 67324801 -76957688 - L1M4c LINE L1 -3579 2803 1519 * 2862 202 144 22 chr12 67324791 67325204 -76957285 - L1M4c LINE L1 -5542 842 481 1974 152 7 0 chr12 67325204 67325507 -76956982 + AluSx SINE Alu 5 309 -3 2862 202 144 22 chr12 67325507 67325829 -76956660 - L1M4c LINE L1 -5903 481 17 3016 256 57 20 chr12 67325840 67327013 -76955476 - L1M4 LINE L1 -968 5178 3962 189 68 68 0 chr12 67327144 67327188 -76955301 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1629 192 106 33 chr12 67327415 67327774 -76954715 - MSTD LTR MaLR -11 385 1 247 170 0 0 chr12 67327867 67327914 -76954575 - Alu SINE Alu -8 294 248 35 54 0 0 chr12 67328296 67328352 -76954137 + AT_rich Low_complexity Low_complexity 1 56 0 423 251 23 21 chr12 67329209 67329409 -76953080 + MSTA LTR MaLR 1 247 -181 1648 107 16 0 chr12 67329409 67329652 -76952837 + L1P LINE L1 4385 4631 -1515 1907 154 19 35 chr12 67329759 67330128 -76952361 + THE1B LTR MaLR 2 364 0 893 264 78 107 chr12 67331363 67332374 -76950115 + MER52A LTR ERV1 647 1746 -9 697 482 29 10 chr12 67332381 67332767 -76949722 - MLT1C LTR MaLR -33 434 42 691 334 141 37 chr12 67332768 67333659 -76948830 + L2 LINE L2 2034 3016 -297 348 280 144 8 chr12 67334430 67334555 -76947934 + MIR SINE MIR 2 143 -119 1846 218 73 42 chr12 67334711 67335216 -76947273 - MER77 LTR ERV1 -6 599 79 289 305 11 0 chr12 67335263 67335358 -76947131 + MIR SINE MIR 152 247 -15 255 170 0 0 chr12 67335634 67335681 -76946808 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2533 181 77 11 chr12 67335916 67336410 -76946079 - L1MA9 LINE L1 -2 6310 5773 227 30 0 30 chr12 67336410 67336443 -76946046 + (TG)n Simple_repeat Simple_repeat 2 33 0 2533 181 77 11 chr12 67336443 67336505 -76945984 - L1MA9 LINE L1 -539 5773 5717 998 197 116 35 chr12 67337926 67338210 -76944279 - L1MA10 LINE L1 0 6334 6028 37 23 0 0 chr12 67338214 67338258 -76944231 + AT_rich Low_complexity Low_complexity 1 44 0 12700 93 4 2 chr12 67338267 67340804 -76941685 - L1PA7 LINE L1 -9 6145 3592 389 151 186 0 chr12 67340810 67340896 -76941593 - AluJb SINE Alu -8 294 193 22 56 0 0 chr12 67340952 67340988 -76941501 + AT_rich Low_complexity Low_complexity 1 36 0 1902 170 39 41 chr12 67341094 67341483 -76941006 + MER61D LTR ERV1 114 501 0 1540 108 0 0 chr12 67442529 67442733 -76839756 - AluSc SINE Alu -105 204 1 29 47 0 0 chr12 67442768 67442811 -76839678 + AT_rich Low_complexity Low_complexity 1 43 0 2608 45 0 0 chr12 67443190 67443501 -76838988 + AluY SINE Alu 1 311 0 12619 135 18 19 chr12 67443711 67447239 -76835250 + L1PA7 LINE L1 2608 6022 -132 28 48 0 0 chr12 67447408 67447450 -76835039 + AT_rich Low_complexity Low_complexity 1 42 0 371 309 55 60 chr12 67449300 67449378 -76833111 + MIR SINE MIR 62 139 -123 3340 166 34 2 chr12 67449378 67449962 -76832527 - LTR26 LTR ERV1 0 603 1 371 309 55 60 chr12 67449962 67450084 -76832405 + MIR SINE MIR 139 261 -1 29 0 0 0 chr12 67450544 67450573 -76831916 + AT_rich Low_complexity Low_complexity 1 29 0 181 400 0 0 chr12 67450702 67450772 -76831717 - MIR3 SINE MIR -23 185 116 1039 158 0 0 chr12 67450951 67451148 -76831341 - AluSg/x SINE Alu 0 328 132 236 319 65 49 chr12 67452275 67452460 -76830029 - L2 LINE L2 -675 2639 2452 474 308 169 20 chr12 67452482 67452836 -76829653 + L2 LINE L2 2381 2787 -527 369 152 36 29 chr12 67452977 67453115 -76829374 + (TA)n Simple_repeat Simple_repeat 1 139 0 190 184 46 11 chr12 67453303 67453390 -76829099 + (CATA)n Simple_repeat Simple_repeat 2 91 0 751 196 0 0 chr12 67453980 67454113 -76828376 + FLAM_C SINE Alu 1 133 0 1852 224 47 92 chr12 67454786 67455510 -76826979 + LTR8 LTR ERV1 1 691 0 240 86 0 0 chr12 67456186 67456221 -76826268 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr12 67456560 67456595 -76825894 + AT_rich Low_complexity Low_complexity 1 35 0 198 103 0 0 chr12 67457027 67457056 -76825433 + (T)n Simple_repeat Simple_repeat 1 29 0 2180 178 34 39 chr12 67457242 67457801 -76824688 - LTR49 LTR ERV1 -26 569 107 465 230 44 9 chr12 67458762 67458875 -76823614 + MLT1A1 LTR MaLR 1 117 -248 602 246 37 0 chr12 67458876 67459010 -76823479 + MLT1A1 LTR MaLR 227 365 0 1573 184 3 44 chr12 67459014 67459334 -76823155 - AluJb SINE Alu 0 312 6 605 146 2 42 chr12 67459510 67459645 -76822844 - L1MC/D LINE L1 -739 5432 5304 564 208 107 0 chr12 67459646 67459795 -76822694 - L1MA9 LINE L1 -33 6279 6115 353 145 0 0 chr12 67459905 67459967 -76822522 + L1MC1 LINE L1 6262 6323 -10 352 237 65 0 chr12 67459993 67460086 -76822403 - L1MD3 LINE L1 -178 7817 7719 1138 229 17 59 chr12 67460089 67460168 -76822321 - L1ME LINE L1 -513 5722 5641 2205 105 0 6 chr12 67460168 67460481 -76822008 + AluSq SINE Alu 3 313 0 1138 229 17 59 chr12 67460481 67460755 -76821734 - L1ME LINE L1 -594 5641 5384 790 326 89 10 chr12 67460768 67461173 -76821316 + L1MEc LINE L1 83 519 -5877 467 288 40 29 chr12 67461216 67461494 -76820995 - L1ME LINE L1 -4233 2163 1883 26 0 0 0 chr12 67461597 67461623 -76820866 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr12 67461662 67461697 -76820792 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr12 67461746 67461778 -76820711 + AT_rich Low_complexity Low_complexity 1 32 0 225 194 67 15 chr12 67462203 67462337 -76820152 + (TA)n Simple_repeat Simple_repeat 2 142 0 421 300 104 67 chr12 67462356 67462566 -76819923 + L2 LINE L2 2554 2755 -559 2252 96 0 3 chr12 67462566 67462867 -76819622 + AluSq SINE Alu 1 300 -13 421 300 104 67 chr12 67462867 67463059 -76819430 + L2 LINE L2 2755 2971 -343 208 187 13 13 chr12 67463227 67463258 -76819231 + (TA)n Simple_repeat Simple_repeat 1 31 -44 407 167 13 0 chr12 67463258 67463336 -76819153 + MADE1 DNA Mariner 1 79 -1 208 187 13 13 chr12 67463336 67463379 -76819110 + (TA)n Simple_repeat Simple_repeat 30 75 0 957 277 69 18 chr12 67463694 67464087 -76818402 - LTR38 LTR ERV1 0 556 144 1757 143 207 11 chr12 67464088 67464446 -76818043 + MSTA LTR MaLR 1 428 0 8461 160 11 45 chr12 67464448 67466080 -76816409 + MSTA-int LTR MaLR 3 1579 -1 1561 156 203 14 chr12 67466081 67466441 -76816048 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr12 67467521 67467542 -76814947 + AT_rich Low_complexity Low_complexity 1 21 0 257 308 70 58 chr12 67468880 67469052 -76813437 + MIR SINE MIR 5 178 -84 1405 234 46 6 chr12 67469057 67469403 -76813086 + MLT2C1 LTR ERVL 1 360 -37 533 275 148 41 chr12 67469408 67470539 -76811950 - L1M4 LINE L1 -1622 4524 3515 27 0 0 0 chr12 67470539 67470566 -76811923 + AT_rich Low_complexity Low_complexity 1 27 0 533 275 148 41 chr12 67470566 67470584 -76811905 - L1M4 LINE L1 -2631 3515 3500 210 189 0 19 chr12 67470584 67470637 -76811852 + T-rich Low_complexity Low_complexity 2 53 0 533 275 148 41 chr12 67470637 67470703 -76811786 - L1M4 LINE L1 -2646 3500 3065 21 82 0 0 chr12 67471033 67471082 -76811407 + AT_rich Low_complexity Low_complexity 1 49 0 1267 307 60 39 chr12 67471614 67472233 -76810256 + L2 LINE L2 1972 2603 -711 254 307 105 9 chr12 67472575 67472689 -76809800 - MIR SINE MIR -57 205 81 369 192 0 0 chr12 67472801 67472874 -76809615 - L1PB4 LINE L1 -14 6142 6070 2244 117 0 0 chr12 67473135 67473435 -76809054 - AluSg SINE Alu -10 300 1 757 224 27 36 chr12 67474058 67474281 -76808208 + L1PB4 LINE L1 5934 6154 -2 734 182 6 44 chr12 67474318 67474477 -76808012 + MLT1B LTR MaLR 192 344 -46 912 248 27 42 chr12 67474504 67474564 -76807925 - L1MA7 LINE L1 -6 6285 6226 312 27 0 0 chr12 67474564 67474601 -76807888 + (CA)n Simple_repeat Simple_repeat 2 38 0 912 248 27 42 chr12 67474601 67474871 -76807618 - L1MA7 LINE L1 -65 6226 5960 1676 286 82 38 chr12 67475352 67476309 -76806180 - L1M4 LINE L1 -1891 4255 3257 1009 266 67 43 chr12 67476361 67476489 -76806000 + L1ME1 LINE L1 5682 5806 -360 737 225 12 12 chr12 67476489 67476649 -76805840 - FRAM SINE Alu -6 160 1 1009 266 67 43 chr12 67476649 67476986 -76805503 + L1ME1 LINE L1 5806 6158 -8 294 372 8 30 chr12 67477017 67477181 -76805308 - MIR SINE MIR -46 162 2 297 0 0 0 chr12 67477251 67477284 -76805205 + (TG)n Simple_repeat Simple_repeat 2 34 0 34 65 0 0 chr12 67477295 67477357 -76805132 + AT_rich Low_complexity Low_complexity 1 62 0 864 313 58 37 chr12 67479939 67480371 -76802118 - LTR16B LTR ERVL -23 441 1 27 0 0 0 chr12 67480807 67480834 -76801655 + AT_rich Low_complexity Low_complexity 1 27 0 2283 90 0 0 chr12 67481348 67481649 -76800840 + AluY SINE Alu 1 301 -10 7146 209 43 17 chr12 67481842 67483417 -76799072 - MER52A LTR ERV1 0 1755 4 224 186 17 0 chr12 67483526 67483585 -76798904 + (TA)n Simple_repeat Simple_repeat 1 60 0 34 24 0 0 chr12 67483796 67483837 -76798652 + AT_rich Low_complexity Low_complexity 1 41 0 1645 115 80 10 chr12 67484017 67484305 -76798184 + MER61-int LTR ERV1 1740 2047 -3170 183 333 54 0 chr12 67484305 67484398 -76798091 + L3 LINE CR1 1180 1277 -300 18062 106 28 14 chr12 67484404 67487333 -76795156 + MER61A-int LTR ERV1 2140 5157 -60 2180 76 17 0 chr12 67487333 67487623 -76794866 - AluY SINE Alu -16 295 1 18062 106 28 14 chr12 67487623 67487685 -76794804 + MER61A-int LTR ERV1 5157 5217 0 1669 164 58 18 chr12 67487685 67488015 -76794474 + MER61A LTR ERV1 1 343 0 480 84 0 0 chr12 67488023 67488094 -76794395 + L1MA6 LINE L1 6226 6296 -4 248 313 90 30 chr12 67488219 67488420 -76794069 - L1ME LINE L1 -513 5651 5439 330 331 100 4 chr12 67488548 67489059 -76793430 - L1ME LINE L1 -824 5322 4763 996 318 60 11 chr12 67489085 67489715 -76792774 + L1M4 LINE L1 1161 1821 -4563 411 282 33 13 chr12 67489734 67489935 -76792554 + L1MB7 LINE L1 5970 6184 0 * 450 212 59 47 chr12 67489926 67490096 -76792393 + L1M4 LINE L1 4071 4242 -2140 1814 203 21 12 chr12 67490103 67490624 -76791865 - L1M LINE L1 -745 5401 4896 4721 125 33 0 chr12 67490626 67491353 -76791136 - L1PA10 LINE L1 -2 7604 6854 13070 137 8 14 chr12 67491353 67494311 -76788178 + L1PA8A LINE L1 3169 6131 0 21431 184 13 8 chr12 67494312 67496089 -76786400 - L1PA10 LINE L1 -743 6841 5074 1883 171 51 17 chr12 67496089 67496441 -76786048 - THE1B LTR MaLR 0 364 1 10113 125 19 6 chr12 67496441 67498001 -76784488 - THE1B-int LTR MaLR 0 1580 1 2229 129 34 14 chr12 67498001 67498358 -76784131 - THE1B LTR MaLR 0 364 1 21431 184 13 8 chr12 67498358 67500526 -76781963 - L1PA10 LINE L1 -2510 5074 2897 2123 60 0 15 chr12 67500526 67500792 -76781697 - AluY SINE Alu 0 311 50 21431 184 13 8 chr12 67500792 67501135 -76781354 - L1PA10 LINE L1 -4687 2897 2557 2537 290 68 34 chr12 67501266 67502337 -76780152 - L1PA10 LINE L1 -6468 1113 6 5936 251 28 21 chr12 67502338 67504303 -76778186 - L1M4 LINE L1 -1243 4903 2927 5902 183 49 15 chr12 67504302 67504795 -76777694 - L1MA4A LINE L1 -7 6296 5821 * 6639 174 24 13 chr12 67504795 67506079 -76776410 + HSMAR2 DNA Mariner 4 1301 -1 5902 183 49 15 chr12 67506079 67507802 -76774687 - L1MA4A LINE L1 -482 5821 4011 7031 198 46 21 chr12 67507803 67509404 -76773085 - L1MCa LINE L1 -4764 1662 23 23 0 0 0 chr12 67509514 67509537 -76772952 + AT_rich Low_complexity Low_complexity 1 23 0 704 341 56 19 chr12 67509656 67510066 -76772423 - L1MEd LINE L1 -5426 693 269 2931 188 25 68 chr12 67510269 67510991 -76771498 + LTR8 LTR ERV1 1 691 0 22 103 0 0 chr12 67512098 67512176 -76770313 + AT_rich Low_complexity Low_complexity 1 78 0 26 30 0 0 chr12 67512188 67512221 -76770268 + AT_rich Low_complexity Low_complexity 1 33 0 1697 159 11 4 chr12 67512867 67513144 -76769345 - AluSg SINE Alu -31 279 1 203 136 45 0 chr12 67514221 67514265 -76768224 + GA-rich Low_complexity Low_complexity 3 48 0 250 183 0 98 chr12 67515008 67515090 -76767399 - MLT1J2 LTR MaLR -17 433 360 544 276 0 0 chr12 67518178 67518301 -76764188 + FRAM SINE Alu 2 124 -52 23 0 0 0 chr12 67518319 67518342 -76764147 + AT_rich Low_complexity Low_complexity 1 23 0 3367 265 47 21 chr12 67518772 67520364 -76762125 + L1MDa LINE L1 2416 4054 -2486 609 212 33 7 chr12 67520399 67520550 -76761939 + L1MDa LINE L1 4296 4450 -2090 694 97 0 44 chr12 67521873 67521987 -76760502 + HY1 scRNA scRNA 2 110 -2 21 36 0 0 chr12 67523966 67523994 -76758495 + AT_rich Low_complexity Low_complexity 1 28 0 1068 245 79 97 chr12 67524006 67524553 -76757936 + MLT1F LTR MaLR 6 542 0 2032 272 86 7 chr12 67525246 67526056 -76756433 - L1ME3A LINE L1 -5 6165 5292 4916 165 54 9 chr12 67526195 67526691 -76755798 + L1MA9 LINE L1 5263 5735 -577 186 43 0 0 chr12 67526691 67526714 -76755775 + (CA)n Simple_repeat Simple_repeat 2 24 0 4916 165 54 9 chr12 67526714 67527205 -76755284 + L1MA9 LINE L1 5735 6294 -18 301 226 60 24 chr12 67527275 67527359 -76755130 - L1MC4 LINE L1 -1351 6691 6605 5257 206 41 9 chr12 67528080 67529945 -76752544 - L1MC1 LINE L1 -14 6319 4400 24 32 0 0 chr12 67530471 67530502 -76751987 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr12 67531121 67531143 -76751346 + AT_rich Low_complexity Low_complexity 1 22 0 1371 125 25 8 chr12 67532365 67532605 -76749884 - L1PA13 LINE L1 -1 6162 5919 193 302 38 0 chr12 67532635 67532688 -76749801 + L2 LINE L2 3210 3264 -8 21 57 0 0 chr12 67533361 67533396 -76749093 + AT_rich Low_complexity Low_complexity 1 35 0 27 73 0 0 chr12 67533979 67534034 -76748455 + AT_rich Low_complexity Low_complexity 1 55 0 304 162 36 36 chr12 67534162 67534273 -76748216 + (CATATA)n Simple_repeat Simple_repeat 6 116 0 1730 176 7 0 chr12 67534283 67534567 -76747922 - AluJo SINE Alu -23 289 4 221 327 29 19 chr12 67534895 67534999 -76747490 - L2 LINE L2 -943 2371 2267 458 291 63 37 chr12 67535508 67535697 -76746792 - MIR SINE MIR -51 211 18 22 0 0 0 chr12 67536948 67536970 -76745519 + AT_rich Low_complexity Low_complexity 1 22 0 262 284 37 0 chr12 67537051 67537212 -76745277 + L1MC/D LINE L1 5687 5781 -340 * 651 235 20 35 chr12 67537211 67537411 -76745078 - L1MC5 LINE L1 -34 7927 7731 2026 109 6 26 chr12 67538351 67538663 -76743826 + AluSq SINE Alu 5 310 -3 525 305 93 12 chr12 67538686 67539094 -76743395 - LTR33 LTR ERVL 0 521 7 227 318 54 34 chr12 67539645 67539793 -76742696 - MIR SINE MIR -17 245 95 260 220 51 0 chr12 67539858 67539917 -76742572 - LTR48 LTR ERV1 -664 123 62 25 31 0 0 chr12 67539919 67539951 -76742538 + AT_rich Low_complexity Low_complexity 1 32 0 328 200 0 29 chr12 67539951 67540021 -76742468 - MER39 LTR ERV1 -639 68 1 859 240 22 23 chr12 67540303 67540660 -76741829 - MLT1C LTR MaLR -18 449 59 22 35 0 0 chr12 67542038 67542067 -76740422 + AT_rich Low_complexity Low_complexity 1 29 0 258 331 34 14 chr12 67543054 67543202 -76739287 - L2 LINE L2 0 3313 3163 22 35 0 0 chr12 67543237 67543266 -76739223 + AT_rich Low_complexity Low_complexity 1 29 0 277 271 125 30 chr12 67543391 67543856 -76738633 - L1ME LINE L1 -4994 1267 722 855 360 48 44 chr12 67544488 67545212 -76737277 - L2 LINE L2 -598 2716 1990 30 59 0 0 chr12 67545349 67545400 -76737089 + AT_rich Low_complexity Low_complexity 1 51 0 2044 113 0 0 chr12 67545416 67545698 -76736791 - AluSc SINE Alu -17 292 11 198 118 0 0 chr12 67545824 67545858 -76736631 + (CA)n Simple_repeat Simple_repeat 1 34 0 25 31 0 0 chr12 67546328 67546360 -76736129 + AT_rich Low_complexity Low_complexity 1 32 0 1207 183 111 49 chr12 67546366 67546672 -76735817 + MLT1C LTR MaLR 1 325 -142 1518 115 129 134 chr12 67546675 67547100 -76735389 + MER4A LTR ERV1 1 423 -241 399 166 14 3 chr12 67547118 67547267 -76735222 + MER4C LTR ERV1 277 465 0 * 693 210 0 38 chr12 67547267 67547416 -76735073 + MLT1C LTR MaLR 325 467 0 274 326 31 0 chr12 67547860 67547958 -76734531 - L2 LINE L2 -1 3271 3171 4028 143 14 5 chr12 67548071 67548716 -76733773 - MER39B LTR ERV1 0 653 3 207 0 0 0 chr12 67550031 67550054 -76732435 + (TA)n Simple_repeat Simple_repeat 2 24 0 272 350 28 55 chr12 67550054 67550297 -76732192 + MLT1J LTR MaLR 101 338 -173 1404 172 13 77 chr12 67550326 67550726 -76731763 + MER67C LTR ERV1 5 403 -245 239 286 14 0 chr12 67550754 67550824 -76731665 + MER67D LTR ERV1 361 431 -83 252 122 0 0 chr12 67551087 67551128 -76731361 + (A)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr12 67551235 67551257 -76731232 + AT_rich Low_complexity Low_complexity 1 22 0 240 295 89 27 chr12 67553037 67553149 -76729340 + MIR3 SINE MIR 41 159 -49 1306 206 43 21 chr12 67553149 67553431 -76729058 - AluJo SINE Alu -22 290 3 1256 235 32 20 chr12 67553668 67554053 -76728436 - MER31B LTR ERV1 0 543 1 197 366 76 0 chr12 67554086 67554217 -76728272 - L2 LINE L2 -12 3301 3161 29 28 0 0 chr12 67556504 67556540 -76725949 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr12 67556936 67556964 -76725525 + AT_rich Low_complexity Low_complexity 1 28 0 191 361 84 0 chr12 67557978 67558061 -76724428 + MIR SINE MIR 97 186 -76 285 29 0 0 chr12 67558673 67558707 -76723782 + (TA)n Simple_repeat Simple_repeat 1 34 0 201 419 38 9 chr12 67559099 67559204 -76723285 + L2 LINE L2 3187 3294 -19 207 0 0 0 chr12 67560253 67560276 -76722213 + (CA)n Simple_repeat Simple_repeat 1 23 0 3921 170 18 13 chr12 67560488 67561195 -76721294 - MER50 LTR ERV1 -23 711 1 2113 160 13 21 chr12 67561195 67561571 -76720918 - MER50-int LTR ERV1 -8 7197 6825 * 17409 214 56 48 chr12 67561553 67563212 -76719277 - MER50-int LTR ERV1 -1000 6205 4561 2950 85 42 0 chr12 67563212 67563636 -76718853 + L1PA13 LINE L1 5717 6158 -5 17409 214 56 48 chr12 67563636 67567388 -76715101 - MER50-int LTR ERV1 -2644 4561 670 196 319 44 62 chr12 67567388 67567548 -76714941 + L2 LINE L2 2594 2750 -564 577 308 68 15 chr12 67567553 67567891 -76714598 + L1MCc LINE L1 22 377 -6046 1231 283 85 38 chr12 67568236 67569405 -76713084 + L1MCc LINE L1 882 2111 -4830 416 252 78 78 chr12 67569539 67569933 -76712556 + L1MCc LINE L1 2893 3236 -3705 749 228 95 8 chr12 67569958 67570199 -76712290 + L1MCc LINE L1 3444 3705 -3236 * 752 201 16 33 chr12 67570196 67570380 -76712109 + L1PA15 LINE L1 5976 6156 -9 472 231 28 0 chr12 67570492 67570674 -76711815 + L1MCc LINE L1 3906 4092 -2849 1671 158 57 41 chr12 67570696 67571063 -76711426 - THE1C LTR MaLR 0 375 3 8557 146 12 39 chr12 67571065 67572673 -76709816 - THE1C-int LTR MaLR 0 1580 4 1285 198 108 47 chr12 67572676 67573019 -76709470 - THE1B LTR MaLR 0 364 1 2110 259 117 44 chr12 67573225 67574137 -76708352 + L1M4 LINE L1 3524 4555 -1591 1091 178 45 0 chr12 67574137 67574379 -76708110 + L1MA4 LINE L1 6034 6286 -14 2110 259 117 44 chr12 67574379 67574739 -76707750 + L1M4 LINE L1 4555 4887 -1259 3373 209 52 23 chr12 67575437 67576333 -76706156 - L1MB8 LINE L1 0 6178 5257 296 200 29 0 chr12 67576337 67576407 -76706082 - L1MB8 LINE L1 -843 5303 5232 738 218 19 6 chr12 67576412 67576568 -76705921 - FRAM SINE Alu -16 160 3 1141 192 74 26 chr12 67576569 67576881 -76705608 - L1MB8 LINE L1 -948 5198 4872 2665 122 70 14 chr12 67577095 67577579 -76704910 + MER9 LTR ERVK 1 511 0 1979 116 40 26 chr12 67577942 67578244 -76704245 - AluSx SINE Alu -4 308 3 900 232 275 17 chr12 67578678 67579027 -76703462 + MLT1E2 LTR MaLR 1 439 -187 7601 197 76 21 chr12 67579292 67580955 -76701534 + MER52A LTR ERV1 1 1755 0 1996 133 0 10 chr12 67582362 67582678 -76699811 + AluSx SINE Alu 1 312 0 504 300 117 67 chr12 67583345 67583708 -76698781 - MLT1J2 LTR MaLR -64 386 1 1861 165 93 20 chr12 67583863 67584262 -76698227 + MSTA LTR MaLR 1 428 0 42 57 0 0 chr12 67585796 67585866 -76696623 + AT_rich Low_complexity Low_complexity 1 70 0 1900 141 3 10 chr12 67586056 67586355 -76696134 + AluSx SINE Alu 3 299 -13 412 340 64 5 chr12 67588902 67589105 -76693384 + MIR SINE MIR 21 235 -27 1959 106 10 23 chr12 67590406 67590708 -76691781 + AluSc SINE Alu 1 298 -11 219 159 0 23 chr12 67591119 67591163 -76691326 + (CAAAT)n Simple_repeat Simple_repeat 2 44 0 1406 100 50 5 chr12 67591729 67591949 -76690540 - LTR12 LTR ERV1 0 714 485 280 290 10 0 chr12 67591953 67592053 -76690436 - LTR30 LTR ERV1 -78 644 544 2729 160 109 34 chr12 67592053 67592886 -76689603 - pTR5 LTR ERV1 -437 1523 5 1611 57 9 19 chr12 67593079 67593290 -76689199 + AluY SINE Alu 85 293 -18 241 305 191 35 chr12 67593443 67593584 -76688905 + MIR SINE MIR 74 236 -26 240 111 0 0 chr12 67593964 67594000 -76688489 + (TATATG)n Simple_repeat Simple_repeat 4 39 0 234 224 69 0 chr12 67594000 67594058 -76688431 + L1MD3 LINE L1 6607 6668 -1327 5921 158 62 18 chr12 67594411 67594604 -76687885 + Tigger3b DNA MER2_type 13 196 -2832 2478 165 40 4 chr12 67594604 67595084 -76687405 + L1MA4A LINE L1 5801 6297 -6 5921 158 62 18 chr12 67595084 67596057 -76686432 + Tigger3b DNA MER2_type 196 1230 -1 807 281 61 18 chr12 67597698 67597976 -76684513 + MLT1H LTR MaLR 1 290 -259 5882 198 16 8 chr12 67598001 67599403 -76683086 + L1P5 LINE L1 4046 5450 -701 29 47 0 0 chr12 67599403 67599446 -76683043 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr12 67600320 67600352 -76682137 + AT_rich Low_complexity Low_complexity 1 32 0 436 98 0 0 chr12 67600682 67600743 -76681746 + AluSc SINE Alu 194 254 -55 195 42 0 0 chr12 67600777 67600801 -76681688 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 2280 63 0 11 chr12 67601473 67601791 -76680698 + AluY SINE Alu 1 315 0 190 286 311 6 chr12 67601935 67602096 -76680393 - MIR SINE MIR 0 262 53 292 74 74 0 chr12 67602307 67602361 -76680128 + L1PA15 LINE L1 6099 6156 -9 224 338 66 22 chr12 67604438 67604574 -76677915 - MIR SINE MIR -57 205 64 504 61 15 0 chr12 67604944 67605010 -76677479 - L1PB1 LINE L1 -69 6082 6016 470 247 0 11 chr12 67605010 67605103 -76677386 - AluJ/FLAM SINE Alu -218 94 3 1967 285 93 38 chr12 67606742 67607570 -76674919 - L1MDa LINE L1 -4880 1660 772 2373 66 3 3 chr12 67607570 67607873 -76674616 - AluY SINE Alu -8 303 1 1967 285 93 38 chr12 67607873 67607990 -76674499 - L1MDa LINE L1 -5768 772 663 785 237 52 73 chr12 67607996 67608283 -76674206 - L1MDa LINE L1 -5999 541 261 249 210 0 0 chr12 67608307 67608369 -76674120 + (TA)n Simple_repeat Simple_repeat 1 62 0 206 191 24 0 chr12 67608391 67608433 -76674056 + (TA)n Simple_repeat Simple_repeat 2 44 0 1525 242 62 70 chr12 67608436 67609127 -76673362 + L1ME1 LINE L1 5331 6016 -150 217 233 0 0 chr12 67610502 67610545 -76671944 - L2 LINE L2 -10 3303 3261 409 344 50 27 chr12 67611103 67611324 -76671165 + MIR SINE MIR 28 253 -9 330 380 43 25 chr12 67611423 67611586 -76670903 + L2 LINE L2 3106 3271 -1 2112 104 3 17 chr12 67612035 67612334 -76670155 + AluSx SINE Alu 1 295 -17 869 294 78 70 chr12 67612653 67613083 -76669406 - L1ME3A LINE L1 -8 6162 5737 2033 137 0 13 chr12 67613083 67613249 -76669240 - AluSx SINE Alu -14 298 136 2398 70 3 0 chr12 67613249 67613551 -76668938 - AluY SINE Alu -8 303 1 2033 137 0 13 chr12 67613551 67613684 -76668805 - AluSx SINE Alu -176 136 3 869 294 78 70 chr12 67613684 67614090 -76668399 - L1ME3A LINE L1 -433 5737 5312 1224 262 71 36 chr12 67614479 67615109 -76667380 - L1ME3A LINE L1 -1273 4873 4222 412 232 21 11 chr12 67615288 67615383 -76667106 - Tigger2a DNA MER2_type 0 444 349 1002 99 0 0 chr12 67615383 67615524 -76666965 - AluSp/q SINE Alu -5 308 168 2003 147 9 29 chr12 67615525 67615871 -76666618 - Tigger2a DNA MER2_type -95 339 1 315 0 0 0 chr12 67615901 67615936 -76666553 + (TG)n Simple_repeat Simple_repeat 2 36 0 889 192 81 0 chr12 67615945 67616117 -76666372 + MER6B DNA MER2_type 5 190 -20 288 242 121 15 chr12 67616181 67616313 -76666176 - L1ME3A LINE L1 -2196 3950 3805 23 54 0 0 chr12 67616619 67616656 -76665833 + AT_rich Low_complexity Low_complexity 1 37 0 1031 228 85 51 chr12 67618416 67619045 -76663444 + L1MEc LINE L1 2310 2920 -3506 364 279 88 37 chr12 67619097 67619448 -76663041 + L1MEc LINE L1 3159 3527 -2899 389 135 122 14 chr12 67619583 67619657 -76662832 - MER51D LTR ERV1 -76 581 500 1444 216 5 76 chr12 67619684 67620091 -76662398 + LTR9 LTR ERV1 1 378 -234 652 266 83 25 chr12 67620082 67620360 -76662129 + LTR19C LTR ERV1 486 779 0 * 301 313 46 0 chr12 67620885 67621016 -76661473 + L1MEc LINE L1 3717 3853 -2573 4149 132 6 0 chr12 67621024 67621660 -76660829 + L1PA14 LINE L1 5464 6103 -58 1093 44 7 0 chr12 67621688 67621825 -76660664 - L1PA7 LINE L1 -2 6152 6015 1183 280 47 31 chr12 67671825 67672470 -76610019 + L1MEc LINE L1 1170 2029 -4578 773 259 99 6 chr12 67672537 67672892 -76609597 + L1MEc LINE L1 2042 2429 -3997 1803 132 4 0 chr12 67672994 67673260 -76609229 + AluSx SINE Alu 38 304 -8 23 54 0 0 chr12 67674110 67674147 -76608342 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr12 67674654 67674684 -76607805 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 67674735 67674760 -76607729 + AT_rich Low_complexity Low_complexity 1 25 0 196 350 32 16 chr12 67675061 67675184 -76607305 - MIR SINE MIR -54 208 84 308 268 36 45 chr12 67675371 67675483 -76607006 + MLT1D LTR MaLR 1 111 -394 1076 248 46 7 chr12 67675631 67675933 -76606556 + MER63 DNA MER1_type 745 1058 -4 393 303 38 42 chr12 67676439 67676703 -76605786 + L1MEc LINE L1 4503 4765 -1661 240 343 70 22 chr12 67676826 67677325 -76605164 - L1MEc LINE L1 -4637 1926 1404 183 299 15 45 chr12 67677635 67677702 -76604787 + L2 LINE L2 3207 3271 -1 357 272 11 22 chr12 67677852 67677944 -76604545 - MLT1D LTR MaLR -131 374 284 433 225 39 0 chr12 67677961 67678090 -76604399 + Charlie1 DNA MER1_type 2419 2552 -209 2932 135 0 5 chr12 67678271 67678708 -76603781 + THE1-int LTR MaLR 849 1283 -297 307 130 0 0 chr12 67678709 67678755 -76603734 - L1P LINE L1 -2075 4071 4026 368 300 59 68 chr12 67678791 67679028 -76603461 - L1MEc LINE L1 -4899 1485 1251 1817 199 36 40 chr12 67679085 67679515 -76602974 + MSTB1 LTR MaLR 1 372 -3 423 301 48 0 chr12 67679986 67680132 -76602357 - L2 LINE L2 -1183 2131 1979 2171 108 14 0 chr12 67680149 67680445 -76602044 + AluSg SINE Alu 1 300 -10 285 51 0 0 chr12 67680445 67680484 -76602005 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr12 67680644 67680675 -76601814 + AT_rich Low_complexity Low_complexity 1 31 0 252 347 84 28 chr12 67681668 67681881 -76600608 + MIR SINE MIR 31 255 -7 192 200 0 0 chr12 67681981 67682021 -76600468 + CT-rich Low_complexity Low_complexity 3 42 0 517 269 160 81 chr12 67682095 67682556 -76599933 - MLT1F LTR MaLR -2 543 57 204 196 18 18 chr12 67683678 67683734 -76598755 + (TAA)n Simple_repeat Simple_repeat 2 57 0 581 296 24 6 chr12 67685003 67685172 -76597317 - MIR SINE MIR -71 191 20 22 0 0 0 chr12 67686225 67686247 -76596242 + AT_rich Low_complexity Low_complexity 1 22 0 423 245 47 0 chr12 67687205 67687311 -76595178 + MIR SINE MIR 12 122 -140 240 265 51 43 chr12 67687958 67688075 -76594414 + L2 LINE L2 1291 1408 -1906 231 337 0 31 chr12 67688236 67688334 -76594155 + L2 LINE L2 1614 1708 -1606 359 229 109 6 chr12 67689840 67690015 -76592474 - Charlie4 DNA MER1_type -39 1922 1730 994 240 12 16 chr12 67690250 67690504 -76591985 - Charlie4 DNA MER1_type -1696 265 13 1619 169 20 30 chr12 67691260 67691555 -76590934 - AluSx SINE Alu -20 292 1 21 36 0 0 chr12 67691911 67691939 -76590550 + AT_rich Low_complexity Low_complexity 1 28 0 1338 184 126 29 chr12 67692020 67692472 -76590017 - LTR54B LTR ERV1 -2 496 1 396 0 0 0 chr12 67693954 67693998 -76588491 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2170 104 0 3 chr12 67694000 67694289 -76588200 - AluSx SINE Alu -24 288 1 198 377 0 0 chr12 67694297 67694358 -76588131 + MIR3 SINE MIR 133 193 -15 26 0 0 0 chr12 67694632 67694658 -76587831 + AT_rich Low_complexity Low_complexity 1 26 0 265 131 33 0 chr12 67695315 67695376 -76587113 + (CA)n Simple_repeat Simple_repeat 1 63 0 244 293 138 8 chr12 67696160 67696283 -76586206 + MIR SINE MIR 101 239 -23 1107 309 57 17 chr12 67696341 67696745 -76585744 + LTR16A LTR ERVL 18 437 -13 330 267 113 21 chr12 67696753 67697101 -76585388 - L1MEc LINE L1 -3772 2610 2266 262 340 73 35 chr12 67697447 67697873 -76584616 - L1MEc LINE L1 -4701 1683 1242 295 304 11 22 chr12 67698994 67699086 -76583403 - MLT1D LTR MaLR -131 374 284 433 225 39 0 chr12 67699103 67699232 -76583257 + Charlie1 DNA MER1_type 2419 2552 -209 1824 215 73 29 chr12 67699257 67699561 -76582928 + Charlie1 DNA MER1_type 2089 2378 -383 1556 245 78 27 chr12 67699561 67700038 -76582451 - MLT1D LTR MaLR 0 505 5 1824 215 73 29 chr12 67700038 67700346 -76582143 + Charlie1 DNA MER1_type 2378 2728 -33 482 171 0 0 chr12 67700351 67700439 -76582050 + MLT1D LTR MaLR 416 503 -2 210 291 128 0 chr12 67701115 67701201 -76581288 + MIR SINE MIR 92 188 -74 2354 67 0 10 chr12 67702701 67703000 -76579489 - AluY SINE Alu -15 296 1 1796 265 69 27 chr12 67703176 67703739 -76578750 + MLT1E LTR MaLR 1 587 -6 1709 178 113 7 chr12 67704471 67704914 -76577575 + L1 LINE L1 3065 3554 -2592 29 0 0 0 chr12 67705006 67705035 -76577454 + AT_rich Low_complexity Low_complexity 1 29 0 309 146 55 0 chr12 67705272 67705283 -76577206 + MER3 DNA MER1_type 35 48 -161 662 234 9 88 chr12 67705283 67705510 -76576979 - MER3 DNA MER1_type 0 209 1 217 209 0 0 chr12 67706425 67706468 -76576021 + GA-rich Low_complexity Low_complexity 1 43 0 591 239 51 6 chr12 67706562 67706738 -76575751 - L1MC3 LINE L1 -1495 6290 6107 1291 300 81 15 chr12 67707797 67708267 -76574222 + MLT1G LTR MaLR 88 588 -2 374 337 11 16 chr12 67708380 67708570 -76573919 - MIR SINE MIR -1 261 73 264 319 42 67 chr12 67708571 67708690 -76573799 - LTR16A LTR ERVL -174 276 161 273 348 8 0 chr12 67708695 67708813 -76573676 + L1ME3 LINE L1 5915 6033 -129 1620 207 34 17 chr12 67708828 67709185 -76573304 - MLT1A1 LTR MaLR -2 363 1 22 0 0 0 chr12 67709269 67709291 -76573198 + AT_rich Low_complexity Low_complexity 1 22 0 297 252 61 23 chr12 67709327 67709474 -76573015 + L1 LINE L1 3780 3931 -2215 210 37 0 0 chr12 67709515 67709542 -76572947 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 2283 19 0 0 chr12 67709542 67709809 -76572680 - L1HS LINE L1 0 6155 5889 29 0 0 0 chr12 67711043 67711072 -76571417 + AT_rich Low_complexity Low_complexity 1 29 0 213 176 78 20 chr12 67713487 67713538 -76568951 - MIR SINE MIR -21 241 188 1764 109 0 0 chr12 67714923 67715162 -76567327 - AluY SINE Alu -72 239 1 3114 214 73 25 chr12 67715165 67715268 -76567221 - L1MD2 LINE L1 -104 6649 6552 312 70 0 0 chr12 67715268 67715311 -76567178 + (TG)n Simple_repeat Simple_repeat 2 44 0 3114 214 73 25 chr12 67715311 67715997 -76566492 - L1MD2 LINE L1 -201 6552 5822 1862 254 67 41 chr12 67716119 67716957 -76565532 - L1MD2 LINE L1 -855 5685 4826 871 174 26 7 chr12 67717026 67717181 -76565308 + MER49 LTR ERV1 5 162 -761 31 26 0 0 chr12 67717287 67717325 -76565164 + AT_rich Low_complexity Low_complexity 1 38 0 234 105 0 0 chr12 67718095 67718133 -76564356 + (CA)n Simple_repeat Simple_repeat 1 38 0 2321 103 3 0 chr12 67718169 67718471 -76564018 + AluSx SINE Alu 3 305 -7 272 364 37 8 chr12 67718837 67718973 -76563516 + MIR SINE MIR 17 154 -64 1535 232 61 7 chr12 67719328 67719738 -76562751 + MER63B DNA MER1_type 1 432 -4 1071 238 32 42 chr12 67720242 67720621 -76561868 + L1 LINE L1 4223 4597 -1549 807 181 162 32 chr12 67721559 67721775 -76560714 + AluJb SINE Alu 3 246 -66 256 336 7 34 chr12 67724217 67724429 -76558060 + CT-rich Low_complexity Low_complexity 1 206 0 4195 159 10 19 chr12 67724600 67725324 -76557165 + MER49 LTR ERV1 207 923 0 1272 239 72 21 chr12 67725327 67725799 -76556690 - L1MD2 LINE L1 -1728 4812 4317 1723 203 64 66 chr12 67725799 67726267 -76556222 - MLT1D LTR MaLR -14 491 25 2983 252 83 66 chr12 67726314 67728220 -76554269 - L1MD2 LINE L1 -2249 4291 2420 3460 211 78 6 chr12 67728220 67729026 -76553463 - MER6 DNA MER2_type -1 864 1 2983 252 83 66 chr12 67729026 67729184 -76553305 - L1MD2 LINE L1 -4120 2420 2266 2015 130 0 35 chr12 67729184 67729499 -76552990 + AluSx SINE Alu 1 304 -8 2983 252 83 66 chr12 67729499 67729646 -76552843 - L1MD2 LINE L1 -4274 2266 2034 460 175 48 10 chr12 67729630 67729733 -76552756 - L1MD2 LINE L1 -5335 1208 1102 * 691 225 199 20 chr12 67729762 67730113 -76552376 + MER41B LTR ERV1 103 363 -115 249 167 24 95 chr12 67730206 67730290 -76552199 + MER66A LTR ERV1 285 362 -116 373 304 32 55 chr12 67730426 67730738 -76551751 - HAL1 LINE L1 -1148 1359 1055 22 0 0 0 chr12 67731769 67731791 -76550698 + AT_rich Low_complexity Low_complexity 1 22 0 234 236 18 0 chr12 67732050 67732105 -76550384 + (TA)n Simple_repeat Simple_repeat 1 56 0 385 122 0 111 chr12 67732594 67732684 -76549805 + MADE1 DNA Mariner 1 80 0 204 217 0 0 chr12 67733355 67733401 -76549088 + (TA)n Simple_repeat Simple_repeat 1 46 0 194 436 0 8 chr12 67733568 67733685 -76548804 - L2 LINE L2 -258 3014 2899 209 310 164 26 chr12 67733704 67733820 -76548669 + L2 LINE L2 3178 3309 -4 21 0 0 0 chr12 67733824 67733845 -76548644 + AT_rich Low_complexity Low_complexity 1 21 0 214 273 0 18 chr12 67734256 67734311 -76548178 + (TATG)n Simple_repeat Simple_repeat 3 56 0 411 111 0 111 chr12 67734800 67734890 -76547599 + MADE1 DNA Mariner 1 80 0 204 217 0 0 chr12 67735561 67735607 -76546882 + (TA)n Simple_repeat Simple_repeat 1 46 0 194 436 0 8 chr12 67735774 67735891 -76546598 - L2 LINE L2 -258 3014 2899 219 308 162 26 chr12 67735910 67736027 -76546462 + L2 LINE L2 3178 3310 -3 22 88 0 0 chr12 67736479 67736536 -76545953 + AT_rich Low_complexity Low_complexity 1 57 0 192 319 0 44 chr12 67737060 67737151 -76545338 + MIR SINE MIR 77 163 -99 276 291 73 56 chr12 67737236 67737703 -76544786 - L1MC5 LINE L1 -35 7926 7452 362 314 66 19 chr12 67738912 67739183 -76543306 + L1MC4a LINE L1 5260 5543 -2265 507 274 88 10 chr12 67739186 67739390 -76543099 + L1MC4a LINE L1 5717 5936 -1872 329 292 163 6 chr12 67741136 67741314 -76541175 - MLT1J LTR MaLR -7 504 299 1055 224 92 3 chr12 67741427 67741775 -76540714 - Charlie5 DNA MER1_type 0 2624 2246 356 258 31 34 chr12 67741756 67741933 -76540556 - MER3 DNA MER1_type -56 153 13 * 246 314 8 66 chr12 67742056 67742177 -76540312 - MLT1J LTR MaLR -397 114 1 537 174 93 76 chr12 67743165 67743337 -76539152 - MLT1B LTR MaLR -215 175 1 233 368 26 0 chr12 67743520 67743634 -76538855 - MLT1J LTR MaLR -243 268 152 2892 42 0 0 chr12 67743654 67744011 -76538478 - L1P LINE L1 -2514 3632 3276 1222 199 18 3 chr12 67744008 67744334 -76538155 + L1P LINE L1 4999 5329 -817 * 402 396 88 13 chr12 67744724 67745032 -76537457 - L3 LINE CR1 -3 1574 1244 3909 207 141 48 chr12 67745132 67745430 -76537059 + Charlie1a DNA MER1_type 5 274 -2487 2381 78 3 0 chr12 67745430 67745738 -76536751 - AluY SINE Alu -2 309 1 3909 207 141 48 chr12 67745738 67746767 -76535722 + Charlie1a DNA MER1_type 274 1455 0 368 347 78 10 chr12 67747121 67747314 -76535175 - MIR SINE MIR 0 262 57 1442 131 93 0 chr12 67747436 67747673 -76534816 + AluJb SINE Alu 3 261 -51 24 0 0 0 chr12 67747743 67747767 -76534722 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 67747950 67747979 -76534510 + AT_rich Low_complexity Low_complexity 1 29 0 2051 117 13 0 chr12 67749169 67749467 -76533022 + AluSx SINE Alu 1 302 -10 285 51 0 0 chr12 67749467 67749506 -76532983 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr12 67749665 67749696 -76532793 + AT_rich Low_complexity Low_complexity 1 31 0 252 347 84 28 chr12 67750690 67750903 -76531586 + MIR SINE MIR 31 255 -7 192 200 0 0 chr12 67751003 67751043 -76531446 + CT-rich Low_complexity Low_complexity 3 42 0 517 269 160 81 chr12 67751117 67751578 -76530911 - MLT1F LTR MaLR -2 543 57 295 312 48 68 chr12 67753778 67754028 -76528461 - L2 LINE L2 -71 3242 2998 203 0 0 36 chr12 67756313 67756341 -76526148 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 240 35 0 0 chr12 67756664 67756693 -76525796 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 931 177 0 0 chr12 67756695 67756842 -76525647 - FRAM SINE Alu -30 146 1 209 161 0 0 chr12 67756843 67756874 -76525615 + (CAT)n Simple_repeat Simple_repeat 3 33 0 24 77 0 0 chr12 67757430 67757482 -76525007 + AT_rich Low_complexity Low_complexity 1 52 0 210 103 51 0 chr12 67758138 67758177 -76524312 + L2 LINE L2 1882 1922 -1392 224 231 23 138 chr12 67758306 67758436 -76524053 + L2 LINE L2 3199 3313 0 200 175 35 0 chr12 67758919 67758976 -76523513 + GA-rich Low_complexity Low_complexity 2 60 0 24 0 0 0 chr12 67759213 67759237 -76523252 + AT_rich Low_complexity Low_complexity 1 24 0 430 295 66 24 chr12 67759270 67759436 -76523053 + MIR SINE MIR 1 173 -89 1796 234 77 56 chr12 67760055 67760640 -76521849 - MLT1E2 LTR MaLR -27 598 1 187 219 41 27 chr12 67760640 67760713 -76521776 - L2 LINE L2 -125 3188 3115 324 265 91 15 chr12 67761356 67761488 -76521001 + MER90 LTR ERV1 421 562 -13 870 257 28 9 chr12 67761847 67762061 -76520428 - MER58A DNA MER1_type -6 218 1 1985 133 43 42 chr12 67762084 67762628 -76519861 + MER51A LTR ERV1 1 633 -1 30 97 0 0 chr12 67763386 67763479 -76519010 + AT_rich Low_complexity Low_complexity 1 93 0 6356 30 5 18 chr12 67763546 67764347 -76518142 - L1P LINE L1 -1060 5086 4296 395 271 71 13 chr12 67764932 67765087 -76517402 + L1ME2 LINE L1 5990 6153 -11 1100 243 14 4 chr12 67766345 67766625 -76515864 + MER63 DNA MER1_type 774 1056 -4 2172 225 28 23 chr12 67767129 67767734 -76514755 + L1 LINE L1 4223 4830 -1316 646 243 61 57 chr12 67767766 67768046 -76514443 + L1MDa LINE L1 1569 1849 -4691 * 6450 210 34 43 chr12 67768041 67768198 -76514291 - L1MC3 LINE L1 0 7785 7628 1973 134 16 40 chr12 67768198 67768647 -76513842 + LTR21B LTR ERV1 1 438 0 6450 210 34 43 chr12 67768647 67770158 -76512331 - L1MC3 LINE L1 -157 7628 6133 765 250 93 19 chr12 67770157 67770481 -76512008 + L1MCb LINE L1 625 972 -4935 * 2298 244 179 9 chr12 67770934 67772248 -76510241 + L1MCb LINE L1 1298 2845 -3581 336 328 23 8 chr12 67772534 67772665 -76509824 - MIR SINE MIR -14 248 116 2486 103 11 19 chr12 67772798 67773175 -76509314 - THE1C LTR MaLR -1 374 1 309 151 0 0 chr12 67773665 67773718 -76508771 + (CA)n Simple_repeat Simple_repeat 2 54 0 222 272 18 9 chr12 67773873 67773987 -76508502 + CT-rich Low_complexity Low_complexity 3 117 0 24 53 0 0 chr12 67774056 67774094 -76508395 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr12 67774510 67774532 -76507957 + AT_rich Low_complexity Low_complexity 1 22 0 2417 55 0 58 chr12 67775423 67775751 -76506738 - AluY SINE Alu -2 309 1 273 339 23 15 chr12 67776345 67776475 -76506014 + L1M3c LINE L1 1357 1487 -6009 1894 260 21 22 chr12 67777269 67778069 -76504420 + L1M3c LINE L1 2115 2917 -4579 1810 263 61 47 chr12 67778219 67779068 -76503421 + L1M3c LINE L1 2589 3459 -4106 378 0 0 0 chr12 67779068 67779110 -76503379 + (CA)n Simple_repeat Simple_repeat 1 42 0 1810 263 61 47 chr12 67779110 67779416 -76503073 + L1M3c LINE L1 3459 3759 -3806 1961 105 0 7 chr12 67779417 67779693 -76502796 - AluSg SINE Alu -1 309 36 453 311 59 71 chr12 67779920 67780158 -76502331 + MIR SINE MIR 6 240 -22 1245 243 27 63 chr12 67780389 67780610 -76501879 + L1PB3 LINE L1 3553 3780 -3785 2471 74 0 0 chr12 67780610 67780920 -76501569 - AluY SINE Alu -1 310 1 1245 243 27 63 chr12 67780920 67781228 -76501261 + L1PB3 LINE L1 3780 4066 -3499 1979 206 25 14 chr12 67781232 67781747 -76500742 - L1 LINE L1 -2580 3566 3046 479 129 43 52 chr12 67781743 67781859 -76500630 - L1 LINE L1 -3829 2317 2203 * 5401 163 6 20 chr12 67781882 67783321 -76499168 + L1PB3 LINE L1 6149 7573 0 4661 164 72 10 chr12 67783325 67784248 -76498241 + L1MA4 LINE L1 5320 6299 -1 2168 123 0 7 chr12 67784335 67784644 -76497845 + AluSq SINE Alu 1 307 -6 642 224 20 7 chr12 67786302 67786449 -76496040 - LTR52 LTR ERVL -13 408 260 697 242 21 36 chr12 67786482 67786676 -76495813 - LTR52 LTR ERVL -230 191 1 3554 254 40 67 chr12 67786692 67787940 -76494549 - LTR52-int LTR ERVL -21 3535 2091 3563 272 48 43 chr12 67787960 67789344 -76493145 - LTR52-int LTR ERVL -1379 2177 786 2159 237 42 19 chr12 67789356 67789980 -76492509 - LTR52-int LTR ERVL -2892 664 1 1050 237 101 35 chr12 67789991 67790366 -76492123 - LTR52 LTR ERVL -19 402 3 215 31 31 0 chr12 67791344 67791376 -76491113 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1689 151 59 51 chr12 67791403 67791618 -76490871 - THE1C LTR MaLR 0 375 153 2218 93 0 0 chr12 67791618 67791920 -76490569 + AluSc SINE Alu 1 302 0 1689 151 59 51 chr12 67791920 67792075 -76490414 - THE1C LTR MaLR -222 153 1 29 0 0 0 chr12 67792474 67792503 -76489986 + GC_rich Low_complexity Low_complexity 1 29 0 183 42 0 0 chr12 67792762 67792786 -76489703 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 842 155 52 13 chr12 67792786 67792941 -76489548 - THE1C LTR MaLR -214 161 1 247 265 15 44 chr12 67793166 67793234 -76489255 - MIR SINE MIR -154 108 43 326 317 98 9 chr12 67793610 67793834 -76488655 - MLT1L LTR MaLR -13 602 359 288 303 0 9 chr12 67794634 67794743 -76487746 + GA-rich Low_complexity Low_complexity 1 108 0 410 361 13 6 chr12 67795404 67795562 -76486927 - MLT1I LTR MaLR -147 262 104 383 194 86 11 chr12 67795678 67795771 -76486718 + LTR67 LTR ERVL 458 557 0 893 251 56 12 chr12 67795908 67796159 -76486330 + MIR SINE MIR 1 262 0 23 0 0 0 chr12 67796932 67796955 -76485534 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr12 67797131 67797154 -76485335 + AT_rich Low_complexity Low_complexity 1 23 0 283 364 67 6 chr12 67797750 67797915 -76484574 - MIR SINE MIR -38 224 50 419 248 122 93 chr12 67798210 67798712 -76483777 - L1M2 LINE L1 -5465 1384 635 264 287 11 21 chr12 67798967 67799061 -76483428 + (TA)n Simple_repeat Simple_repeat 1 93 0 30 0 0 0 chr12 67799587 67799617 -76482872 + AT_rich Low_complexity Low_complexity 1 30 0 189 312 39 39 chr12 67800163 67800240 -76482249 + L2 LINE L2 2787 2863 -451 29 60 0 0 chr12 67802355 67802405 -76480084 + AT_rich Low_complexity Low_complexity 1 50 0 2498 116 14 8 chr12 67803097 67803468 -76479021 - THE1C LTR MaLR 0 375 3 4502 142 1 7 chr12 67803470 67804159 -76478330 - THE1C-int LTR MaLR 0 1580 896 1516 83 9 165 chr12 67804153 67804480 -76478009 - THE1C-int LTR MaLR -1303 277 2 * 2469 116 19 8 chr12 67804481 67804852 -76477637 - THE1C LTR MaLR 0 375 1 2340 72 6 31 chr12 67807926 67808244 -76474245 - AluY SINE Alu -1 310 1 1992 224 96 103 chr12 67808337 67808961 -76473528 + MLT1E2 LTR MaLR 5 626 0 928 266 71 49 chr12 67808986 67809506 -76472983 - L1MC4a LINE L1 -633 7228 6721 372 43 0 0 chr12 67809506 67809552 -76472937 + (TG)n Simple_repeat Simple_repeat 1 46 0 928 266 71 49 chr12 67809552 67809632 -76472857 - L1MC4a LINE L1 -1140 6721 6644 6821 168 8 8 chr12 67810063 67812212 -76470277 + L1PA14 LINE L1 3987 6137 -24 184 29 29 29 chr12 67812215 67812249 -76470240 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 3124 205 140 96 chr12 67812257 67812932 -76469557 + LTR49-int LTR ERV1 3369 4013 -2318 634 163 0 0 chr12 67812932 67813030 -76469459 + AluJ/FLAM SINE Alu 1 98 -214 3124 205 140 96 chr12 67813030 67813884 -76468605 + LTR49-int LTR ERV1 4013 6329 -2 1225 150 7 170 chr12 67813887 67814293 -76468196 + LTR49 LTR ERV1 1 340 -255 21 57 0 0 chr12 67814591 67814626 -76467863 + GC_rich Low_complexity Low_complexity 1 35 0 182 296 74 0 chr12 67815279 67815333 -76467156 - L2 LINE L2 -37 3235 3178 526 191 50 20 chr12 67816927 67817069 -76465420 - L1MA8 LINE L1 -5 6286 6156 853 149 14 7 chr12 67817076 67817224 -76465265 - L1MA8 LINE L1 -247 6044 5896 1964 185 40 32 chr12 67817391 67817939 -76464550 + MLT2A2 LTR ERVL 1 554 0 2498 116 14 8 chr12 67818733 67819104 -76463385 - THE1C LTR MaLR 0 375 3 4520 141 1 7 chr12 67819106 67819795 -76462694 - THE1C-int LTR MaLR 0 1580 896 1240 85 23 0 chr12 67819789 67819965 -76462524 - THE1C-int LTR MaLR -1303 277 98 * 880 155 7 0 chr12 67819963 67820118 -76462371 - THE1C-int LTR MaLR -1424 156 1 * 1273 204 46 14 chr12 67820118 67820426 -76462063 - THE1B LTR MaLR 0 364 52 21 0 0 0 chr12 67820516 67820537 -76461952 + GC_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr12 67820558 67820607 -76461882 + GC_rich Low_complexity Low_complexity 1 49 0 239 252 72 18 chr12 67820875 67820986 -76461503 + HAL1 LINE L1 52 168 -2339 261 0 0 0 chr12 67820997 67821026 -76461463 + (CA)n Simple_repeat Simple_repeat 2 30 0 7212 49 3 0 chr12 67821549 67822957 -76459532 - L1PA2 LINE L1 0 6155 4745 29 60 0 0 chr12 67823086 67823136 -76459353 + GC_rich Low_complexity Low_complexity 1 50 0 224 150 33 0 chr12 67823217 67823277 -76459212 + (CGGGG)n Simple_repeat Simple_repeat 5 66 0 30 0 0 0 chr12 67823277 67823307 -76459182 + GC_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr12 67823341 67823378 -76459111 + GC_rich Low_complexity Low_complexity 1 37 0 764 281 63 51 chr12 67823453 67824297 -76458192 + L1MC4 LINE L1 5943 6617 -1191 242 343 0 10 chr12 67824298 67824397 -76458092 - L1MD3 LINE L1 -792 7203 7106 1566 216 75 5 chr12 67824411 67824810 -76457679 + L1MD3 LINE L1 7561 7987 -8 25 51 0 0 chr12 67824784 67824823 -76457666 + AT_rich Low_complexity Low_complexity 1 39 0 * 2254 142 15 10 chr12 67825009 67825411 -76457078 - L1MA9 LINE L1 -1 6311 5908 2492 133 106 0 chr12 67825411 67825853 -76456636 - Tigger3(Golem) DNA MER2_type -10 3019 2531 21 36 0 0 chr12 67826610 67826638 -76455851 + AT_rich Low_complexity Low_complexity 1 28 0 633 273 50 64 chr12 67826931 67827308 -76455181 - MER113 DNA MER1_type? 0 521 150 2130 140 119 10 chr12 67828255 67828641 -76453848 - MSTA LTR MaLR 0 428 1 1362 198 112 22 chr12 67828743 67829056 -76453433 + L1MA5 LINE L1 460 800 -6689 866 262 97 39 chr12 67829051 67829513 -76452976 + L1MA5 LINE L1 2964 3452 -4113 * 5123 181 41 18 chr12 67829505 67831448 -76451041 + L1MA5 LINE L1 5736 7717 -2 390 316 127 30 chr12 67831478 67831975 -76450514 + L1M3e LINE L1 3697 4241 -3324 348 241 121 17 chr12 67833484 67833600 -76448889 - MER103 DNA DNA -11 155 28 646 169 38 8 chr12 67833626 67833867 -76448622 + CT-rich Low_complexity Low_complexity 1 248 0 369 117 0 0 chr12 67833878 67833938 -76448551 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 231 103 0 0 chr12 67833952 67833991 -76448498 + (TG)n Simple_repeat Simple_repeat 2 40 0 2051 123 0 3 chr12 67834041 67834342 -76448147 - AluSx SINE Alu -12 300 1 325 332 95 13 chr12 67835573 67835805 -76446684 - L1M4 LINE L1 -1545 4601 4351 188 229 0 42 chr12 67835837 67835885 -76446604 + MER5B DNA MER1_type 7 52 -126 271 271 75 19 chr12 67836179 67836286 -76446203 + MER5B DNA MER1_type 66 178 0 2379 73 7 0 chr12 67836575 67836877 -76445612 - AluSp SINE Alu -9 304 1 1509 223 19 6 chr12 67838090 67838409 -76444080 - MER74C LTR ERVL -2 458 136 212 269 0 0 chr12 67838696 67838774 -76443715 + G-rich Low_complexity Low_complexity 1 78 0 449 246 0 16 chr12 67838894 67839077 -76443412 + G-rich Low_complexity Low_complexity 1 180 0 21 0 0 0 chr12 67839102 67839123 -76443366 + GC_rich Low_complexity Low_complexity 1 21 0 244 101 25 63 chr12 67839140 67839219 -76443270 + G-rich Low_complexity Low_complexity 4 79 0 183 80 0 0 chr12 67839842 67839867 -76442622 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2364 168 19 5 chr12 67839980 67840403 -76442086 - MSTB1 LTR MaLR 0 432 4 2446 135 20 8 chr12 67841541 67841933 -76440556 + THE1B-int LTR MaLR 1184 1580 0 2381 137 8 3 chr12 67841933 67842290 -76440199 + THE1B LTR MaLR 1 359 -5 36 0 0 0 chr12 67842368 67842404 -76440085 + AT_rich Low_complexity Low_complexity 1 36 0 2011 144 0 0 chr12 67843142 67843434 -76439055 + AluSx SINE Alu 9 300 -12 704 308 29 8 chr12 67843457 67843697 -76438792 - MIR SINE MIR -10 252 8 235 278 0 0 chr12 67844238 67844292 -76438197 + MER5A DNA MER1_type 53 106 -83 467 263 47 29 chr12 67845437 67845608 -76436881 + MER5B DNA MER1_type 5 178 0 1122 162 4 25 chr12 67846138 67846373 -76436116 - L1PA7 LINE L1 -8 6146 5917 367 191 36 73 chr12 67846615 67846725 -76435764 - MLT1E2 LTR MaLR -520 106 1 281 374 74 5 chr12 67846844 67847034 -76435455 + MIR SINE MIR 6 208 -54 25 0 0 0 chr12 67847335 67847360 -76435129 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr12 67847411 67847441 -76435048 + AT_rich Low_complexity Low_complexity 1 30 0 459 0 0 0 chr12 67850068 67850119 -76432370 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 281 280 96 25 chr12 67850606 67850763 -76431726 - L1MC5 LINE L1 -37 7924 7757 26 30 0 0 chr12 67850828 67850861 -76431628 + AT_rich Low_complexity Low_complexity 1 33 0 5872 87 6 19 chr12 67851098 67851902 -76430587 + L1PA7 LINE L1 3648 4442 -1704 6368 78 15 6 chr12 67851902 67853230 -76429259 + L1PA7 LINE L1 4810 6154 0 5872 87 6 19 chr12 67853230 67853274 -76429215 + L1PA7 LINE L1 4442 4485 -1661 467 263 47 29 chr12 67853753 67853924 -76428565 - MER5B DNA MER1_type 0 178 5 291 344 42 0 chr12 67855070 67855166 -76427323 - MER5A DNA MER1_type -83 106 7 3378 186 36 3 chr12 67857648 67858007 -76424482 - MER73 LTR ERVL 0 644 255 327 25 0 0 chr12 67858007 67858047 -76424442 + (TC)n Simple_repeat Simple_repeat 1 40 0 3378 186 36 3 chr12 67858047 67858305 -76424184 - MER73 LTR ERVL -389 255 7 35 54 0 0 chr12 67858890 67858946 -76423543 + AT_rich Low_complexity Low_complexity 1 56 0 1598 86 10 0 chr12 67859429 67859638 -76422851 + AluSq SINE Alu 86 296 -17 876 318 70 34 chr12 67860808 67861225 -76421264 + L1MC4 LINE L1 15 389 -5656 * 993 264 8 0 chr12 67861211 67861461 -76421028 + L1MC4 LINE L1 652 903 -5142 * 4037 201 155 29 chr12 67861457 67862614 -76419875 + L1MC3 LINE L1 6482 7783 -2 831 227 48 24 chr12 67862802 67863053 -76419436 - MER58B DNA MER1_type -6 335 79 344 316 118 22 chr12 67863560 67864195 -76418294 + L1MC4 LINE L1 4816 5511 -1053 916 265 46 94 chr12 67864345 67864981 -76417508 + L1MC4 LINE L1 5675 6340 -1886 2103 178 8 18 chr12 67864981 67865375 -76417114 + MLT1B LTR MaLR 1 390 0 916 265 46 94 chr12 67865375 67866343 -76416146 + L1MC4 LINE L1 6340 7035 -1191 285 286 34 34 chr12 67866344 67866463 -76416026 - L1MD3 LINE L1 -792 7203 7085 * 1597 216 75 5 chr12 67866457 67866856 -76415633 + L1MD3 LINE L1 7561 7987 -8 2254 142 15 10 chr12 67867055 67867457 -76415032 - L1MA9 LINE L1 -1 6311 5908 3740 130 84 14 chr12 67867457 67868151 -76414338 - Tigger3(Golem) DNA MER2_type -11 3018 2277 664 194 0 0 chr12 67868142 67868250 -76414239 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 1380 129 50 50 chr12 67868250 67868530 -76413959 - L1MA9 LINE L1 -406 5906 5627 338 304 19 62 chr12 67868525 67868686 -76413803 + L1M3a LINE L1 973 1126 -5177 * 217 267 10 119 chr12 67869025 67869126 -76413363 + L3 LINE CR1 1485 1574 -3 1501 133 106 20 chr12 67870192 67870485 -76412004 + THE1C LTR MaLR 1 318 -57 1452 104 0 0 chr12 67870527 67870719 -76411770 - AluSg/x SINE Alu -11 299 108 679 146 0 0 chr12 67870720 67870823 -76411666 + AluSg SINE Alu 13 115 -195 264 224 17 0 chr12 67870823 67870881 -76411608 + THE1C LTR MaLR 306 364 0 302 251 63 46 chr12 67871499 67871674 -76410815 - L1ME LINE L1 -366 5755 5578 269 335 32 50 chr12 67871907 67872125 -76410364 - MIR SINE MIR 0 262 49 1661 16 0 0 chr12 67872224 67872412 -76410077 - AluYa5 SINE Alu -2 309 122 1393 204 72 23 chr12 67872672 67873020 -76409469 - MLT1A1 LTR MaLR 0 365 1 2166 156 28 17 chr12 67875046 67875406 -76407083 - THE1B LTR MaLR 0 364 1 11037 117 8 4 chr12 67875406 67876980 -76405509 - THE1B-int LTR MaLR 0 1580 1 2363 135 39 14 chr12 67876980 67877335 -76405154 - THE1B LTR MaLR 0 364 1 31 44 0 0 chr12 67877669 67877714 -76404775 + GC_rich Low_complexity Low_complexity 1 45 0 282 262 6 54 chr12 67877763 67877931 -76404558 + G-rich Low_complexity Low_complexity 4 163 0 186 191 0 0 chr12 67877953 67877995 -76404494 + G-rich Low_complexity Low_complexity 1 42 0 40 21 0 0 chr12 67877995 67878042 -76404447 + GC_rich Low_complexity Low_complexity 1 47 0 739 244 108 23 chr12 67878297 67878783 -76403706 + L1M3a LINE L1 1666 2278 -4106 7073 208 31 7 chr12 67878783 67880135 -76402354 - L1M1 LINE L1 -5783 1782 398 313 239 18 37 chr12 67880135 67880244 -76402245 + L1M3a LINE L1 3472 3578 -2804 1091 16 0 8 chr12 67880352 67880478 -76402011 - L1P LINE L1 -1536 4610 4486 * 6437 34 5 4 chr12 67880475 67881238 -76401251 + L1P3 LINE L1 3697 4460 -1686 3835 100 33 0 chr12 67881234 67882103 -76400386 + L1P3 LINE L1 4810 5700 -472 * 260 302 22 22 chr12 67882223 67882362 -76400127 + CT-rich Low_complexity Low_complexity 2 140 0 3515 175 7 8 chr12 67882506 67883605 -76398884 - L1PA16 LINE L1 -340 5826 4730 499 129 43 52 chr12 67883628 67883744 -76398745 + L1 LINE L1 2203 2317 -3829 * 1834 220 31 14 chr12 67883740 67884250 -76398239 + L1 LINE L1 3046 3564 -2582 30 27 0 0 chr12 67884749 67884786 -76397703 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr12 67884981 67885020 -76397469 + AT_rich Low_complexity Low_complexity 1 39 0 381 269 88 12 chr12 67885598 67885758 -76396731 - L1ME2 LINE L1 -3 6161 5990 36 62 0 0 chr12 67886332 67886396 -76396093 + GC_rich Low_complexity Low_complexity 1 64 0 240 252 31 16 chr12 67886396 67886523 -76395966 + (CCGCG)n Simple_repeat Simple_repeat 3 131 0 203 298 9 35 chr12 67886594 67886708 -76395781 + (CCCCG)n Simple_repeat Simple_repeat 5 115 0 377 187 58 101 chr12 67886879 67887018 -76395471 + LTR48 LTR ERV1 625 757 -30 305 354 60 57 chr12 67887644 67888011 -76394478 + L1MEd LINE L1 305 672 -5447 1986 131 3 35 chr12 67888746 67889060 -76393429 + AluSx SINE Alu 1 304 -8 420 259 59 0 chr12 67889072 67889207 -76393282 - L1MDa LINE L1 -4364 2176 2034 736 199 3 16 chr12 67889391 67889546 -76392943 - THE1B LTR MaLR -220 155 1 6998 169 16 2 chr12 67889546 67890709 -76391780 - THE1B-int LTR MaLR 0 1580 402 235 222 81 33 chr12 67891396 67892082 -76390407 + L1MC4a LINE L1 5428 6080 -1728 333 47 0 0 chr12 67892082 67892125 -76390364 + (CA)n Simple_repeat Simple_repeat 2 44 0 235 222 81 33 chr12 67892125 67892231 -76390258 + L1MC4a LINE L1 6080 6179 -1629 1954 107 21 21 chr12 67892231 67892532 -76389957 + AluSx SINE Alu 1 301 0 219 146 0 0 chr12 67893418 67893459 -76389030 + (G)n Simple_repeat Simple_repeat 1 41 0 29 0 0 0 chr12 67893721 67893750 -76388739 + GC_rich Low_complexity Low_complexity 1 29 0 30 62 0 25 chr12 67894067 67894121 -76388368 + AT_rich Low_complexity Low_complexity 1 54 -24 2480 75 3 0 chr12 67894121 67894428 -76388061 + AluY SINE Alu 1 308 -3 30 62 0 25 chr12 67894428 67894453 -76388036 + AT_rich Low_complexity Low_complexity 54 78 0 209 365 40 14 chr12 67894527 67894675 -76387814 + MIR SINE MIR 49 200 -62 22 0 0 0 chr12 67894900 67894922 -76387567 + AT_rich Low_complexity Low_complexity 1 22 0 3403 188 36 3 chr12 67895419 67895778 -76386711 - MER73 LTR ERVL 0 644 255 327 25 0 0 chr12 67895778 67895818 -76386671 + (TC)n Simple_repeat Simple_repeat 1 40 0 3403 188 36 3 chr12 67895818 67896076 -76386413 - MER73 LTR ERVL -389 255 7 35 54 0 0 chr12 67896660 67896716 -76385773 + AT_rich Low_complexity Low_complexity 1 56 0 837 204 6 0 chr12 67897202 67897374 -76385115 + AluSg/x SINE Alu 88 260 -50 1477 104 0 0 chr12 67898481 67898673 -76383816 - AluSg/x SINE Alu -11 299 108 741 162 9 0 chr12 67898674 67898785 -76383704 + AluSg SINE Alu 13 124 -186 287 257 63 46 chr12 67899453 67899628 -76382861 - L1ME LINE L1 -366 5755 5578 2254 156 34 17 chr12 67901282 67901640 -76380849 - THE1B LTR MaLR 0 364 1 324 178 123 101 chr12 67901759 67901978 -76380511 - MER97c DNA MER1_type? -55 1035 812 834 217 86 104 chr12 67902286 67902622 -76379867 - MER97a DNA MER1_type? -312 582 253 22 35 0 0 chr12 67902751 67902780 -76379709 + AT_rich Low_complexity Low_complexity 1 29 0 1964 232 50 43 chr12 67903346 67904160 -76378329 + L1MC3 LINE L1 5092 5403 -743 275 333 77 43 chr12 67906511 67906865 -76375624 + L2 LINE L2 2695 3059 -213 286 312 0 0 chr12 67906919 67906996 -76375493 - L2 LINE L2 -1010 2304 2228 219 154 15 62 chr12 67907348 67907413 -76375076 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 5216 154 4 0 chr12 67907703 67908519 -76373970 - L1PA15 LINE L1 0 6165 5347 1141 202 0 0 chr12 67908619 67908817 -76373672 + L1PA15 LINE L1 5968 6165 0 217 178 27 55 chr12 67909107 67909180 -76373309 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 253 338 0 0 chr12 67909524 67909601 -76372888 + L2 LINE L2 2228 2304 -1010 275 333 77 43 chr12 67909655 67910009 -76372480 - L2 LINE L2 -213 3059 2695 191 187 0 65 chr12 67910861 67910968 -76371521 + C-rich Low_complexity Low_complexity 3 102 0 189 312 39 39 chr12 67911726 67911803 -76370686 + L2 LINE L2 2787 2863 -451 456 204 23 0 chr12 67914389 67914477 -76368012 - L1M4 LINE L1 -5772 770 681 364 222 10 10 chr12 67914550 67914649 -76367840 - L1M4 LINE L1 -6382 160 62 646 262 80 39 chr12 67914876 67915331 -76367158 - L1MDa LINE L1 -3598 2942 2468 21 57 0 0 chr12 67915497 67915532 -76366957 + GC_rich Low_complexity Low_complexity 1 35 0 38 0 0 0 chr12 67915581 67915619 -76366870 + GC_rich Low_complexity Low_complexity 1 38 0 34 116 0 0 chr12 67915660 67915841 -76366648 + GC_rich Low_complexity Low_complexity 1 181 0 47 61 0 0 chr12 67916020 67916102 -76366387 + GC_rich Low_complexity Low_complexity 1 82 0 23 0 0 0 chr12 67916381 67916404 -76366085 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr12 67916448 67916474 -76366015 + AT_rich Low_complexity Low_complexity 1 26 0 695 132 9 0 chr12 67916504 67916610 -76365879 + THE1B LTR MaLR 2 108 -256 691 169 0 22 chr12 67916696 67916880 -76365609 + G-rich Low_complexity Low_complexity 1 180 0 246 192 0 0 chr12 67916938 67916990 -76365499 + G-rich Low_complexity Low_complexity 1 52 0 35 24 0 0 chr12 67917124 67917166 -76365323 + GC_rich Low_complexity Low_complexity 1 42 0 2116 92 0 36 chr12 67917547 67917850 -76364639 - AluY SINE Alu -19 292 1 1622 242 51 60 chr12 67917943 67918497 -76363992 + MLT1E2 LTR MaLR 5 552 -73 239 285 63 83 chr12 67919174 67919669 -76362820 + HAL1 LINE L1 875 1359 -1148 261 167 24 95 chr12 67919805 67919889 -76362600 - MER66A LTR ERV1 -116 362 285 555 227 137 42 chr12 67919990 67920325 -76362164 - MER41B LTR ERV1 -123 487 103 30 0 0 0 chr12 67922235 67922265 -76360224 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr12 67925487 67925515 -76356974 + AT_rich Low_complexity Low_complexity 1 28 0 22 42 0 0 chr12 67925741 67925765 -76356724 + GC_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr12 67926382 67926410 -76356079 + AT_rich Low_complexity Low_complexity 1 28 0 580 67 0 0 chr12 67926508 67926583 -76355906 - MADE1 DNA Mariner -5 75 1 310 365 24 45 chr12 67926691 67926981 -76355508 + L2 LINE L2 1012 1295 -2019 602 365 72 5 chr12 67927003 67927376 -76355113 + L2 LINE L2 2323 2720 -594 1007 248 16 37 chr12 67927844 67928219 -76354270 - L1MCa LINE L1 -5044 1520 1154 680 238 55 10 chr12 67928265 67928467 -76354022 - L1MCa LINE L1 -5334 711 501 972 319 21 21 chr12 67928476 67928902 -76353587 - L1MCa LINE L1 -5617 428 3 303 277 95 18 chr12 67928965 67929250 -76353239 - L1ME4a LINE L1 -12 6109 5803 2388 245 20 18 chr12 67929457 67930751 -76351738 - L1ME4a LINE L1 -352 5822 4527 25 51 0 0 chr12 67930917 67930956 -76351533 + GC_rich Low_complexity Low_complexity 1 39 0 39 60 0 0 chr12 67931111 67931178 -76351311 + GC_rich Low_complexity Low_complexity 1 67 0 45 62 0 0 chr12 67931338 67931418 -76351071 + GC_rich Low_complexity Low_complexity 1 80 0 26 0 0 0 chr12 67931484 67931510 -76350979 + GC_rich Low_complexity Low_complexity 1 26 0 442 324 97 13 chr12 67931794 67932032 -76350457 + L1ME LINE L1 5469 5726 -395 643 175 18 121 chr12 67932188 67932411 -76350078 + LTR49 LTR ERV1 1 200 -395 2811 169 8 24 chr12 67933134 67933638 -76348851 + THE1-int LTR MaLR 523 1018 -562 35 93 0 0 chr12 67933736 67933822 -76348667 + GC_rich Low_complexity Low_complexity 1 86 0 * 92 86 0 13 chr12 67933792 67934096 -76348393 + GC_rich Low_complexity Low_complexity 1 300 0 29 28 0 0 chr12 67934138 67934174 -76348315 + GC_rich Low_complexity Low_complexity 1 36 0 1349 204 72 23 chr12 67934630 67934978 -76347511 - MLT1A1 LTR MaLR 0 365 1 23 33 0 0 chr12 67935589 67935619 -76346870 + AT_rich Low_complexity Low_complexity 1 30 0 337 191 16 37 chr12 67935767 67935959 -76346530 + CT-rich Low_complexity Low_complexity 1 188 0 2273 257 40 16 chr12 67935960 67936825 -76345664 + L1M4 LINE L1 824 1709 -4833 247 213 25 12 chr12 67936939 67937019 -76345470 + (CGGGG)n Simple_repeat Simple_repeat 4 84 0 226 263 17 46 chr12 67937392 67937567 -76344922 + (GTGTG)n Simple_repeat Simple_repeat 1 170 0 346 321 8 18 chr12 67937980 67938364 -76344125 + G-rich Low_complexity Low_complexity 1 380 0 1065 217 0 9 chr12 67938488 67938700 -76343789 - MER67C LTR ERV1 -307 403 194 455 204 75 15 chr12 67938911 67939072 -76343417 - MER67D LTR ERV1 -353 161 24 269 352 0 0 chr12 67939493 67939621 -76342868 + C-rich Low_complexity Low_complexity 1 128 0 2128 177 43 23 chr12 67939642 67940083 -76342406 - MER49 LTR ERV1 -469 454 5 1271 266 65 47 chr12 67940152 67940870 -76341619 + L1M4 LINE L1 4432 5162 -984 293 237 40 6 chr12 67941085 67941258 -76341231 + (CCGCG)n Simple_repeat Simple_repeat 1 179 0 379 170 198 38 chr12 67941312 67941418 -76341071 - MLT1E3 LTR MaLR -501 123 1 203 0 0 36 chr12 67942544 67942572 -76339917 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 240 35 0 0 chr12 67942895 67942924 -76339565 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 286 313 22 14 chr12 67943109 67943398 -76339091 + C-rich Low_complexity Low_complexity 1 291 0 * 386 356 0 6 chr12 67943330 67943510 -76338979 + CT-rich Low_complexity Low_complexity 1 179 0 * 433 349 0 0 chr12 67943421 67943593 -76338896 + C-rich Low_complexity Low_complexity 1 172 0 709 176 7 20 chr12 67943735 67943883 -76338606 - L1MB1 LINE L1 -121 6047 5902 44 30 0 70 chr12 67944284 67944384 -76338105 + GC_rich Low_complexity Low_complexity 1 93 0 29 70 0 0 chr12 67944506 67944563 -76337926 + GC_rich Low_complexity Low_complexity 1 57 0 36 0 0 0 chr12 67945936 67945972 -76336517 + GC_rich Low_complexity Low_complexity 1 36 0 2356 94 0 3 chr12 68047473 68047771 -76234718 + AluSx SINE Alu 1 297 -15 941 176 75 0 chr12 68048449 68048608 -76233881 + FAM SINE Alu 1 171 -4 1959 153 0 3 chr12 68048609 68048910 -76233579 + AluSx SINE Alu 1 300 -12 1645 182 66 0 chr12 68049161 68049447 -76233042 + AluJb SINE Alu 1 305 -7 2018 94 87 4 chr12 68049447 68049724 -76232765 + AluSx SINE Alu 1 300 -12 304 337 74 0 chr12 68050278 68050373 -76232116 + L2 LINE L2 3138 3239 -33 434 219 188 0 chr12 68053080 68053176 -76229313 + MER81 DNA DNA 1 114 0 1637 130 0 16 chr12 68053297 68053544 -76228945 - AluJo SINE Alu -3 309 67 471 235 24 18 chr12 68054426 68054592 -76227897 + L1MC5 LINE L1 7763 7929 -32 3571 197 30 77 chr12 68054736 68055753 -76226736 + LTR5 LTR ERVK 1 969 0 280 292 81 24 chr12 68055958 68056139 -76226350 + MIR SINE MIR 20 259 -3 22 35 0 0 chr12 68056305 68056334 -76226155 + AT_rich Low_complexity Low_complexity 1 29 0 1911 124 0 35 chr12 68056746 68057028 -76225461 - AluSx SINE Alu -40 272 1 257 271 9 93 chr12 68058776 68058883 -76223606 + MIR3 SINE MIR 91 188 -20 195 228 53 18 chr12 68059809 68059866 -76222623 + L2 LINE L2 3163 3221 -92 4943 155 41 3 chr12 68060342 68061227 -76221262 + L1P LINE L1 11 928 -5218 3908 20 2 4 chr12 68061227 68061719 -76220770 - L1P LINE L1 -3314 2832 2342 463 373 44 4 chr12 68062173 68062401 -76220088 + MIR SINE MIR 13 249 -13 1833 160 0 11 chr12 68062840 68063121 -76219368 - AluSx SINE Alu -31 281 4 1721 169 69 12 chr12 68063131 68063550 -76218939 + Charlie5 DNA MER1_type 694 1136 -1476 431 202 32 0 chr12 68063879 68063973 -76218516 + Charlie5 DNA MER1_type 1194 1290 -1322 476 315 117 47 chr12 68064379 68065040 -76217449 - L2 LINE L2 -337 2977 2271 349 253 0 0 chr12 68065189 68065268 -76217221 - LTR40a LTR ERVL 0 519 441 2066 129 11 0 chr12 68065277 68065564 -76216925 - AluSx SINE Alu -22 290 1 477 243 122 75 chr12 68065568 68065823 -76216666 - L1ME4a LINE L1 0 6121 5855 2150 99 17 0 chr12 68065872 68066166 -76216323 - AluSp SINE Alu -14 299 1 1457 162 158 0 chr12 68066197 68066463 -76216026 + AluJb SINE Alu 1 308 -4 187 244 81 105 chr12 68066672 68066758 -76215731 + MIR SINE MIR 100 183 -79 195 267 171 51 chr12 68068073 68068290 -76214199 + L2 LINE L2 2814 3056 -216 191 319 0 28 chr12 68071374 68071446 -76211043 - MIR3 SINE MIR -21 187 118 183 286 0 0 chr12 68072315 68072357 -76210132 + L2 LINE L2 3231 3272 0 213 259 37 0 chr12 68073366 68073420 -76209069 + (CATG)n Simple_repeat Simple_repeat 3 58 0 346 301 88 9 chr12 68073585 68073698 -76208791 + MIR SINE MIR 28 149 -113 342 113 14 56 chr12 68074505 68074576 -76207913 - THE1C LTR MaLR -307 68 1 292 204 48 48 chr12 68075836 68075939 -76206550 + L3b LINE CR1 1276 1378 -205 215 138 0 31 chr12 68076018 68076083 -76206406 + (CAGAGA)n Simple_repeat Simple_repeat 6 68 0 326 322 120 24 chr12 68079274 68079482 -76203007 - L1ME3A LINE L1 -19 6151 5924 253 206 140 75 chr12 68079508 68079615 -76202874 - L1ME3A LINE L1 -208 5962 5849 1744 160 0 3 chr12 68079616 68079910 -76202579 - AluJb SINE Alu -19 293 1 279 261 219 29 chr12 68079910 68080220 -76202269 - L1ME3A LINE L1 -1462 4684 4316 783 219 136 31 chr12 68080230 68080613 -76201876 - L1ME3A LINE L1 -1904 4242 3820 8243 103 1 4 chr12 68080777 68082073 -76200416 - L1P1 LINE L1 -667 5488 4197 255 127 14 113 chr12 68082933 68083004 -76199485 - L1MA5A LINE L1 0 6297 6234 585 281 54 6 chr12 68084394 68084561 -76197928 + MER5B DNA MER1_type 4 178 0 686 213 35 17 chr12 68084617 68084791 -76197698 + MER5B DNA MER1_type 1 177 -1 503 304 29 7 chr12 68085484 68085622 -76196867 + MIR SINE MIR 47 187 -75 500 287 8 8 chr12 68086678 68086821 -76195668 - MIR SINE MIR -65 143 9 2019 127 3 13 chr12 68087660 68087968 -76194521 - AluSx SINE Alu -7 305 1 530 265 59 12 chr12 68088351 68088521 -76193968 + MIR3 SINE MIR 2 179 -29 716 295 51 13 chr12 68090209 68090446 -76192043 - MIR SINE MIR -6 256 11 2089 91 14 0 chr12 68090950 68091237 -76191252 - AluSx SINE Alu -21 291 1 24 0 0 0 chr12 68091534 68091558 -76190931 + AT_rich Low_complexity Low_complexity 1 24 0 195 167 0 0 chr12 68093798 68093840 -76188649 + T-rich Low_complexity Low_complexity 1 42 0 1026 155 54 0 chr12 68095345 68095513 -76186976 - MER5A DNA MER1_type -12 177 1 241 98 20 20 chr12 68095546 68095597 -76186892 + (CATTT)n Simple_repeat Simple_repeat 3 53 0 1576 175 21 0 chr12 68095598 68095878 -76186611 - AluJo SINE Alu -26 286 1 313 282 47 54 chr12 68095880 68096029 -76186460 - MER5B DNA MER1_type -12 166 19 644 260 23 23 chr12 68096217 68096394 -76186095 - MER5B DNA MER1_type -1 177 1 834 194 42 31 chr12 68097507 68097698 -76184791 - MLT1B LTR MaLR -106 284 92 7939 110 28 0 chr12 68097707 68098850 -76183639 - Tigger1 DNA MER2_type -3 2415 1241 418 271 53 20 chr12 68098851 68099054 -76183435 + FLAM_C SINE Alu 1 109 -24 416 267 80 118 chr12 68099200 68099675 -76182814 + L2 LINE L2 2854 3310 -3 257 62 0 0 chr12 68100344 68100376 -76182113 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 0 0 0 chr12 68102237 68102257 -76180232 + (CA)n Simple_repeat Simple_repeat 2 21 0 1821 160 3 0 chr12 68102261 68102549 -76179940 - AluJb SINE Alu -23 289 1 185 241 35 52 chr12 68102693 68102751 -76179738 + MIR SINE MIR 2 58 -204 252 291 28 44 chr12 68102993 68103175 -76179314 + (CACCC)n Simple_repeat Simple_repeat 1 179 0 1127 208 35 17 chr12 68103699 68103930 -76178559 + MER8 DNA MER2_type 2 236 -3 312 299 0 23 chr12 68104171 68104258 -76178231 - MIR SINE MIR -160 102 18 2005 140 0 0 chr12 68104560 68104860 -76177629 - AluJo SINE Alu -12 300 1 225 73 49 24 chr12 68104860 68104892 -76177597 + MER58 DNA MER1_type 74 109 -106 329 209 168 37 chr12 68105215 68105406 -76177083 - L1ME3A LINE L1 -333 5837 5622 4737 142 80 81 chr12 68105557 68106697 -76175792 - pTR5 LTR ERV1 -352 2086 795 233 263 38 12 chr12 68107105 68107185 -76175304 + MLT1L LTR MaLR 207 288 -327 345 200 46 85 chr12 68107378 68107508 -76174981 - MLT1L LTR MaLR 0 615 491 887 240 128 27 chr12 68108439 68108735 -76173754 - MER115 DNA AcHobo -11 682 357 482 189 28 9 chr12 68108904 68109010 -76173479 + MER96 DNA MER1_type? 1 108 -67 302 191 3 0 chr12 68109700 68109766 -76172723 - L1PA8A LINE L1 -411 5720 5653 1878 164 0 6 chr12 68109925 68110237 -76172252 - AluSx SINE Alu 0 312 3 1354 153 141 8 chr12 68111230 68111485 -76171004 - AluJo SINE Alu -13 289 1 258 207 17 17 chr12 68111817 68111875 -76170614 + MIR SINE MIR 87 144 -64 228 298 83 12 chr12 68112056 68112140 -76170349 + MIR SINE MIR 97 186 -76 1230 218 117 22 chr12 68112600 68112917 -76169572 + LTR40b LTR ERVL 52 398 -64 1605 175 31 3 chr12 68112919 68113211 -76169278 + AluJb SINE Alu 3 302 -10 2115 94 3 17 chr12 68113217 68113515 -76168974 + AluY SINE Alu 1 294 -17 876 175 96 0 chr12 68113515 68113692 -76168797 - Charlie1 DNA MER1_type -991 1770 1577 742 109 0 18 chr12 68113717 68113827 -76168662 + L1P LINE L1 1 108 -6038 463 325 96 18 chr12 68114850 68115244 -76167245 + L2 LINE L2 2321 2745 -569 974 144 46 0 chr12 68115430 68115603 -76166886 + Tigger1 DNA MER2_type 412 592 -1826 315 325 0 0 chr12 68115658 68115784 -76166705 - L1PA13 LINE L1 -2 6161 6036 44 106 0 0 chr12 68115818 68115988 -76166501 + GC_rich Low_complexity Low_complexity 1 170 0 21 0 0 0 chr12 68116018 68116039 -76166450 + GC_rich Low_complexity Low_complexity 1 21 0 279 204 58 17 chr12 68116068 68116240 -76166249 + (CG)n Simple_repeat Simple_repeat 1 179 0 219 180 63 36 chr12 68116293 68116404 -76166085 + (CGCGG)n Simple_repeat Simple_repeat 3 116 0 25 51 0 0 chr12 68116413 68116452 -76166037 + GC_rich Low_complexity Low_complexity 1 39 0 737 142 8 30 chr12 68116703 68116837 -76165652 - FLAM_C SINE Alu -2 131 1 21 0 0 0 chr12 68116849 68116870 -76165619 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 68117791 68117813 -76164676 + AT_rich Low_complexity Low_complexity 1 22 0 305 316 15 53 chr12 68118470 68118603 -76163886 + HAL1b LINE L1 1194 1321 -27 302 354 0 0 chr12 68118886 68118985 -76163504 + C-rich Low_complexity Low_complexity 1 99 0 197 275 0 12 chr12 68119002 68119082 -76163407 + CT-rich Low_complexity Low_complexity 4 82 0 237 65 0 0 chr12 68119102 68119133 -76163356 + (T)n Simple_repeat Simple_repeat 1 31 0 330 389 6 6 chr12 68119137 68119304 -76163185 + CT-rich Low_complexity Low_complexity 4 170 0 306 287 40 0 chr12 68119516 68119617 -76162872 - L1MC5 LINE L1 -78 7883 7779 475 295 110 24 chr12 68120934 68121158 -76161331 + L2 LINE L2 1649 1899 -1415 207 0 0 0 chr12 68121158 68121181 -76161308 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 475 295 110 24 chr12 68121181 68121210 -76161279 + L2 LINE L2 1899 1924 -1390 1907 146 121 6 chr12 68121227 68121583 -76160906 - Tigger3(Golem) DNA MER2_type -1 3028 2632 341 307 18 18 chr12 68122093 68122207 -76160282 - MIR3 SINE MIR -32 176 63 840 284 109 33 chr12 68122297 68122804 -76159685 - L2 LINE L2 -36 3277 2720 1465 130 0 0 chr12 68123794 68124010 -76158479 + AluSg/x SINE Alu 82 297 -13 33787 37 1 0 chr12 68224459 68229593 -76052896 + L1PA3 LINE L1 1040 6155 0 992 39 31 0 chr12 68229593 68229719 -76052770 + L1PA7 LINE L1 6023 6154 0 3249 119 18 20 chr12 68229723 68230284 -76052205 + Tigger2 DNA MER2_type 2065 2624 -94 238 192 26 154 chr12 68230342 68230420 -76052069 - Tigger2 DNA MER2_type 0 2718 2651 463 97 28 0 chr12 68230497 68230569 -76051920 + L1MB1 LINE L1 6094 6167 -1 21 36 0 0 chr12 68230602 68230630 -76051859 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 68231961 68231982 -76050507 + AT_rich Low_complexity Low_complexity 1 21 0 585 208 62 0 chr12 68232576 68232706 -76049783 - MER69 DNA AcHobo -1083 143 6 889 161 261 14 chr12 68232717 68232935 -76049554 - Tigger7 DNA MER2_type 0 2487 2216 1550 174 19 4 chr12 68232945 68233209 -76049280 - Tigger7 DNA MER2_type -465 268 1 22 0 0 0 chr12 68233829 68233851 -76048638 + AT_rich Low_complexity Low_complexity 1 22 0 764 226 0 13 chr12 68234980 68235139 -76047350 + FAM SINE Alu 16 172 -13 1308 234 103 29 chr12 68235409 68235896 -76046593 - Charlie2 DNA MER1_type -568 2294 1772 352 214 0 0 chr12 68235917 68235987 -76046502 + Tigger1 DNA MER2_type 1 70 -2348 30 0 0 0 chr12 68236831 68236861 -76045628 + AT_rich Low_complexity Low_complexity 1 30 0 23 78 0 0 chr12 68237072 68237123 -76045366 + AT_rich Low_complexity Low_complexity 1 51 0 307 358 42 0 chr12 68237619 68237714 -76044775 + L2 LINE L2 3141 3239 -33 30 0 0 0 chr12 68238328 68238358 -76044131 + AT_rich Low_complexity Low_complexity 1 30 0 4070 198 78 25 chr12 68238710 68240367 -76042122 - L1MC2 LINE L1 -13 6331 4593 * 4230 258 59 34 chr12 68240357 68241938 -76040551 - L1PA12 LINE L1 -4917 2667 1 1330 223 32 10 chr12 68241942 68242345 -76040144 - L1MC2 LINE L1 -1538 4608 4197 1841 255 36 26 chr12 68242346 68243063 -76039426 - L1MC2 LINE L1 -2617 3529 2806 297 376 93 0 chr12 68243576 68243738 -76038751 - MER91A DNA MER1_type 0 196 20 330 301 123 10 chr12 68244567 68244770 -76037719 - MIR SINE MIR -21 241 16 5389 205 113 39 chr12 68246346 68247893 -76034596 + Charlie6 DNA MER1_type 419 2079 -1421 21 36 0 0 chr12 68249528 68249556 -76032933 + AT_rich Low_complexity Low_complexity 1 28 0 515 293 44 22 chr12 68250300 68250481 -76032008 - LTR16C LTR ERVL -4 487 303 818 390 39 15 chr12 68251131 68251741 -76030748 - ERVL LTR ERVL -510 5254 4630 375 264 118 0 chr12 68252554 68252664 -76029825 + L2 LINE L2 3173 3295 -18 435 335 80 30 chr12 68253786 68254470 -76028019 - L2 LINE L2 -14 3299 2513 696 321 108 14 chr12 68254576 68254872 -76027617 + MLT1I LTR MaLR 63 386 -23 354 244 61 0 chr12 68255272 68255354 -76027135 + AluJo SINE Alu 114 200 -102 819 256 0 19 chr12 68255354 68255561 -76026928 - MLT1A1 LTR MaLR -162 203 1 848 207 40 53 chr12 68255574 68255878 -76026611 + MER34B LTR ERV1 266 565 0 2322 95 0 3 chr12 68255933 68256237 -76026252 - AluY SINE Alu -8 303 1 919 109 8 0 chr12 68257194 68257322 -76025167 + AluSq/x SINE Alu 1 129 -183 1875 137 8 25 chr12 68257422 68257670 -76024819 + L1MCa LINE L1 1693 1935 -4491 2479 36 3 0 chr12 68257670 68257971 -76024518 - AluY SINE Alu -9 302 1 1875 137 8 25 chr12 68257971 68258079 -76024410 + L1MCa LINE L1 1935 2043 -4383 6783 147 13 4 chr12 68258081 68259522 -76022967 - L1PA10 LINE L1 0 6168 4698 249 57 0 0 chr12 68259522 68259557 -76022932 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6783 147 13 4 chr12 68259557 68260061 -76022428 - L1PA10 LINE L1 -1470 4698 4200 477 308 113 9 chr12 68261400 68261621 -76020868 + L3 LINE CR1 808 1051 -526 977 164 0 61 chr12 68261685 68261899 -76020590 - L1PA16 LINE L1 -3 6163 5963 50 18 0 0 chr12 68261908 68261965 -76020524 + AT_rich Low_complexity Low_complexity 1 57 0 409 277 50 82 chr12 68262126 68262337 -76020152 + MIR SINE MIR 30 237 -25 2030 118 6 10 chr12 68262666 68262786 -76019703 + AluSx SINE Alu 1 120 -192 261 0 0 0 chr12 68262786 68262815 -76019674 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2030 118 6 10 chr12 68262815 68263007 -76019482 + AluSx SINE Alu 120 312 0 22 35 0 0 chr12 68263421 68263450 -76019039 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 68266697 68266725 -76015764 + AT_rich Low_complexity Low_complexity 1 28 0 321 323 0 10 chr12 68267970 68268066 -76014423 - MIR SINE MIR -8 254 160 263 301 151 11 chr12 68268058 68268151 -76014338 - MIR3 SINE MIR -99 109 4 * 3834 22 2 0 chr12 68268824 68269320 -76013169 + L1PA3 LINE L1 5698 6194 0 182 316 0 0 chr12 68269835 68269873 -76012616 - MIR SINE MIR -137 71 34 21 36 0 0 chr12 68270985 68271013 -76011476 + AT_rich Low_complexity Low_complexity 1 28 0 321 323 0 10 chr12 68272256 68272352 -76010137 - MIR SINE MIR -8 254 160 263 301 151 11 chr12 68272344 68272437 -76010052 - MIR3 SINE MIR -99 109 4 * 3822 31 2 0 chr12 68273110 68273564 -76008925 + L1PA3 LINE L1 5698 6152 -3 23 68 0 0 chr12 68273564 68273608 -76008881 + AT_rich Low_complexity Low_complexity 1 44 0 231 219 52 52 chr12 68273810 68273906 -76008583 - L2 LINE L2 0 3313 3218 2202 103 3 0 chr12 68277360 68277651 -76004838 + AluSc SINE Alu 1 292 -17 220 338 14 0 chr12 68278019 68278093 -76004396 - MIR SINE MIR -157 105 31 254 306 97 16 chr12 68278457 68278581 -76003908 - MIR SINE MIR -61 201 68 24 0 0 0 chr12 68279650 68279674 -76002815 + AT_rich Low_complexity Low_complexity 1 24 0 1512 244 67 74 chr12 68280486 68281231 -76001258 + HsTC2a DNA Tc2 1 740 -4 25 75 0 0 chr12 68281508 68281561 -76000928 + AT_rich Low_complexity Low_complexity 1 53 0 12299 126 67 46 chr12 68281875 68282202 -76000287 - Tigger1 DNA MER2_type -1 2417 2098 1772 171 7 10 chr12 68282202 68282501 -75999988 - AluJo SINE Alu -14 298 1 12299 126 67 46 chr12 68282501 68283116 -75999373 - Tigger1 DNA MER2_type -320 2098 1498 2367 35 0 0 chr12 68283116 68283398 -75999091 - L1PA5 LINE L1 -6 6148 5867 12299 126 67 46 chr12 68283398 68284101 -75998388 - Tigger1 DNA MER2_type -920 1498 811 16449 36 1 0 chr12 68284101 68286885 -75995604 + L1PA4 LINE L1 3367 6154 -1 12299 126 67 46 chr12 68286885 68287604 -75994885 - Tigger1 DNA MER2_type -1607 811 1 901 229 102 20 chr12 68287625 68287979 -75994510 + Charlie2 DNA MER1_type 1772 2154 -708 1643 190 10 0 chr12 68288342 68288631 -75993858 - AluJo SINE Alu -20 292 1 30 45 0 0 chr12 68288910 68288954 -75993535 + AT_rich Low_complexity Low_complexity 1 44 0 1528 106 0 0 chr12 68289421 68289620 -75992869 + AluSq SINE Alu 1 199 -114 8850 37 0 3 chr12 68290166 68291292 -75991197 - L1P LINE L1 -1489 4657 3535 268 320 33 27 chr12 68293225 68293375 -75989114 + MLT1K LTR MaLR 122 272 -316 583 75 75 0 chr12 68293649 68293742 -75988747 - L1PA3 LINE L1 -243 5912 5813 231 254 15 15 chr12 68295990 68296057 -75986432 - L2 LINE L2 -271 3001 2935 6986 84 4 17 chr12 68296583 68297715 -75984774 + L1P LINE L1 4229 5346 -800 531 258 162 23 chr12 68297830 68298132 -75984357 + L2 LINE L2 2969 3312 -1 2099 139 0 0 chr12 68298599 68298886 -75983603 - AluSq SINE Alu -26 287 1 1316 102 18 151 chr12 68299563 68299848 -75982641 - MER7A DNA MER2_type -101 245 1 6146 184 50 26 chr12 68300961 68301134 -75981355 + L1MCa LINE L1 79 246 -6180 4025 107 0 0 chr12 68301134 68301688 -75980801 + MER41A LTR ERV1 1 554 0 6146 184 50 26 chr12 68301688 68302610 -75979879 + L1MCa LINE L1 246 1221 -5205 252 77 0 0 chr12 68302610 68302649 -75979840 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 6146 184 50 26 chr12 68302649 68303045 -75979444 + L1MCa LINE L1 1221 1606 -4820 14038 184 17 47 chr12 68303160 68307488 -75975001 - L1P3 LINE L1 -2201 4260 1 1926 199 60 14 chr12 68307494 68308293 -75974196 + L1MCa LINE L1 2037 2868 -3558 426 250 133 27 chr12 68308728 68309104 -75973385 + Charlie6 DNA MER1_type 2638 3053 -447 1091 181 15 0 chr12 68309105 68309309 -75973180 - L1PA15 LINE L1 -2 6163 5957 434 82 0 0 chr12 68309334 68309395 -75973094 + L1PA15 LINE L1 5890 5950 -215 1327 103 0 0 chr12 68309401 68309596 -75972893 - L1PA15 LINE L1 -220 5945 5751 579 247 134 16 chr12 68309850 68310044 -75972445 - MLT1-int LTR MaLR -448 923 707 347 276 45 12 chr12 68310223 68310428 -75972061 - L1ME3 LINE L1 -333 5829 5609 189 0 0 0 chr12 68310583 68310604 -75971885 + (TC)n Simple_repeat Simple_repeat 2 22 0 19265 55 2 8 chr12 68310895 68313491 -75968998 - L1P LINE L1 -3560 2586 7 5877 68 9 1 chr12 68313499 68314647 -75967842 - L1PA7 LINE L1 -119 6035 4883 9412 152 62 13 chr12 68314647 68316399 -75966090 - Tigger2 DNA MER2_type -645 2073 236 269 186 0 0 chr12 68316412 68316471 -75966018 - L1MA8 LINE L1 -244 6047 5989 1600 91 0 0 chr12 68316484 68316683 -75965806 - AluSq SINE Alu -114 199 1 30 45 0 0 chr12 68317149 68317193 -75965296 + AT_rich Low_complexity Low_complexity 1 44 0 1638 193 10 0 chr12 68317472 68317762 -75964727 + AluJo SINE Alu 1 293 -19 224 369 49 38 chr12 68318263 68318680 -75963809 + L2 LINE L2 2376 2858 -456 337 311 10 19 chr12 68318718 68318821 -75963668 - L2 LINE L2 -22 3291 3190 275 314 57 7 chr12 68319440 68319580 -75962909 + MLT1L LTR MaLR 368 514 -101 1725 198 73 117 chr12 68319729 68320508 -75961981 - LTR1B LTR ERV1 -81 745 1 282 350 102 18 chr12 68320585 68320811 -75961678 - MIR SINE MIR 0 262 18 24 32 0 0 chr12 68320930 68320961 -75961528 + AT_rich Low_complexity Low_complexity 1 31 0 289 312 156 0 chr12 68321032 68321141 -75961348 - L2 LINE L2 0 3272 3147 243 228 0 35 chr12 68322137 68322194 -75960295 + MER50 LTR ERV1 22 76 -658 596 214 88 11 chr12 68322346 68322528 -75959961 + MER50 LTR ERV1 241 436 -298 1015 149 87 5 chr12 68322578 68322786 -75959703 + MER50 LTR ERV1 510 734 0 6449 22 0 0 chr12 68323332 68324117 -75958372 - L1PA3 LINE L1 -1450 4696 3912 7641 23 0 1 chr12 68324117 68325579 -75956910 + L1PA3 LINE L1 4715 6176 0 817 127 7 14 chr12 68326060 68326202 -75956287 + PABL_A LTR ERV1 520 660 0 5748 192 159 41 chr12 68329898 68331467 -75951022 + MER52A LTR ERV1 1 1754 -1 2066 111 3 10 chr12 68332158 68332456 -75950033 - AluSp SINE Alu -17 296 1 200 135 27 0 chr12 68332503 68332540 -75949949 + (TA)n Simple_repeat Simple_repeat 1 38 0 329 333 47 8 chr12 68332635 68332764 -75949725 - MIR3 SINE MIR -38 170 37 257 329 19 19 chr12 68332907 68333023 -75949466 - MIR SINE MIR -65 143 30 308 304 56 8 chr12 68333160 68333285 -75949204 + MIR SINE MIR 76 206 -56 180 0 0 0 chr12 68334046 68334066 -75948423 + (TTA)n Simple_repeat Simple_repeat 2 21 0 997 178 0 12 chr12 68335838 68336007 -75946482 - AluJo/FRAM SINE Alu -14 298 132 312 139 0 0 chr12 68336009 68336052 -75946437 - Alu SINE Alu -257 45 3 913 347 67 43 chr12 68336472 68337265 -75945224 + L2 LINE L2 529 1340 -1974 221 0 35 0 chr12 68337401 68337430 -75945059 + (TA)n Simple_repeat Simple_repeat 2 31 0 224 285 85 46 chr12 68339574 68339704 -75942785 - MIR SINE MIR -3 259 125 320 281 12 0 chr12 68341173 68341255 -75941234 + L2 LINE L2 3188 3270 -2 207 346 12 12 chr12 68341261 68341342 -75941147 - MIR SINE MIR -125 137 57 23 0 0 0 chr12 68341371 68341394 -75941095 + AT_rich Low_complexity Low_complexity 1 23 0 469 178 144 51 chr12 68341404 68341522 -75940967 - L2 LINE L2 -1 3312 3184 812 192 57 21 chr12 68341546 68341739 -75940750 - MER3 DNA MER1_type -3 206 7 4062 307 121 23 chr12 68341764 68343950 -75938539 - L2 LINE L2 -171 3142 739 21 0 0 0 chr12 68344971 68344992 -75937497 + AT_rich Low_complexity Low_complexity 1 21 0 325 282 128 0 chr12 68346050 68346167 -75936322 - MIR SINE MIR -120 142 11 1738 171 10 3 chr12 68347701 68348011 -75934478 - AluJb SINE Alu 0 312 1 2723 249 11 24 chr12 68348796 68349455 -75933034 - MER82 DNA MER2_type -3 650 1 1576 176 32 86 chr12 68349539 68349712 -75932777 + MLT1B LTR MaLR 1 182 -208 2243 107 0 0 chr12 68349712 68350011 -75932478 + AluSx SINE Alu 1 299 -13 1576 176 32 86 chr12 68350011 68350245 -75932244 + MLT1B LTR MaLR 182 386 -4 374 341 100 43 chr12 68350355 68350754 -75931735 + L2 LINE L2 2851 3272 0 21 36 0 0 chr12 68351112 68351140 -75931349 + AT_rich Low_complexity Low_complexity 1 28 0 1879 147 0 3 chr12 68351257 68351586 -75930903 + AluSx SINE Alu 1 328 0 834 317 61 31 chr12 68351777 68352168 -75930321 - LTR67 LTR ERVL -150 407 5 185 158 105 0 chr12 68352539 68352577 -75929912 - MIR SINE MIR -67 141 100 1437 178 68 4 chr12 68352778 68353042 -75929447 + AluJb SINE Alu 5 285 -27 327 207 28 13 chr12 68354662 68354749 -75927740 - MLT1J LTR MaLR -295 179 67 341 315 42 21 chr12 68356216 68356359 -75926130 - MER5A DNA MER1_type -43 146 1 32 98 0 0 chr12 68357030 68357132 -75925357 + AT_rich Low_complexity Low_complexity 1 102 0 538 309 70 27 chr12 68357292 68357551 -75924938 + MLT1J2 LTR MaLR 10 279 -171 243 61 0 0 chr12 68358182 68358215 -75924274 + (CA)n Simple_repeat Simple_repeat 2 34 0 343 332 121 5 chr12 68358456 68358646 -75923843 + MIR SINE MIR 50 261 -1 23 0 0 0 chr12 68360008 68360031 -75922458 + AT_rich Low_complexity Low_complexity 1 23 0 2194 119 7 0 chr12 68360348 68360658 -75921831 - AluSx SINE Alu 0 312 1 944 173 25 5 chr12 68360668 68360870 -75921619 - L1MA9 LINE L1 -25 6287 6082 470 157 0 0 chr12 68360870 68360953 -75921536 + FRAM SINE Alu 69 151 -25 23 33 0 0 chr12 68361026 68361056 -75921433 + AT_rich Low_complexity Low_complexity 1 30 0 238 0 0 0 chr12 68361120 68361151 -75921338 - L1MA7 LINE L1 -29 6262 6232 21 82 0 0 chr12 68362784 68362833 -75919656 + AT_rich Low_complexity Low_complexity 1 49 0 215 367 11 11 chr12 68362855 68362945 -75919544 - MIR SINE MIR -115 147 58 291 291 99 21 chr12 68363233 68363374 -75919115 + MIR SINE MIR 55 206 -56 305 245 49 39 chr12 68363618 68363720 -75918769 + MIR SINE MIR 154 256 -6 182 61 0 61 chr12 68363921 68363954 -75918535 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 24 77 0 0 chr12 68363959 68364011 -75918478 + AT_rich Low_complexity Low_complexity 1 52 0 61 45 0 0 chr12 68364044 68364133 -75918356 + AT_rich Low_complexity Low_complexity 1 89 0 26 0 0 0 chr12 68364176 68364202 -75918287 + AT_rich Low_complexity Low_complexity 1 26 0 2975 209 46 10 chr12 68364250 68364878 -75917611 + MER82 DNA MER2_type 1 651 -2 533 235 117 5 chr12 68365068 68365281 -75917208 - L1ME LINE L1 -602 5562 5326 333 250 58 52 chr12 68365432 68365604 -75916885 - L1ME4a LINE L1 -17 6104 5932 1722 240 58 16 chr12 68365682 68366166 -75916323 - HsTC2a DNA Tc2 -237 507 4 212 241 25 13 chr12 68366176 68366255 -75916234 + (TA)n Simple_repeat Simple_repeat 1 80 0 320 281 12 0 chr12 68368569 68368651 -75913838 + L2 LINE L2 3188 3270 -2 218 333 12 12 chr12 68368657 68368738 -75913751 - MIR SINE MIR -125 137 57 447 186 144 51 chr12 68368800 68368918 -75913571 - L2 LINE L2 -1 3312 3184 785 197 57 21 chr12 68368942 68369135 -75913354 - MER3 DNA MER1_type -3 206 7 4083 306 121 23 chr12 68369160 68371346 -75911143 - L2 LINE L2 -171 3142 739 21 0 0 0 chr12 68372365 68372386 -75910103 + AT_rich Low_complexity Low_complexity 1 21 0 325 282 128 0 chr12 68373444 68373561 -75908928 - MIR SINE MIR -120 142 11 1738 171 10 3 chr12 68375095 68375405 -75907084 - AluJb SINE Alu 0 312 1 2723 249 11 24 chr12 68376190 68376849 -75905640 - MER82 DNA MER2_type -3 650 1 1576 176 32 86 chr12 68376933 68377106 -75905383 + MLT1B LTR MaLR 1 182 -208 2255 104 0 0 chr12 68377106 68377405 -75905084 + AluSx SINE Alu 1 299 -13 1576 176 32 86 chr12 68377405 68377639 -75904850 + MLT1B LTR MaLR 182 386 -4 374 341 100 43 chr12 68377749 68378148 -75904341 + L2 LINE L2 2851 3272 0 21 36 0 0 chr12 68378506 68378534 -75903955 + AT_rich Low_complexity Low_complexity 1 28 0 1914 148 0 0 chr12 68378651 68378979 -75903510 + AluSx SINE Alu 1 328 0 834 317 61 31 chr12 68379170 68379561 -75902928 - LTR67 LTR ERVL -150 407 5 185 158 105 0 chr12 68379932 68379970 -75902519 - MIR SINE MIR -67 141 100 1437 178 68 4 chr12 68380171 68380435 -75902054 + AluJb SINE Alu 5 285 -27 341 315 42 21 chr12 68382052 68382195 -75900294 - MER5A DNA MER1_type -43 146 1 32 98 0 0 chr12 68382866 68382968 -75899521 + AT_rich Low_complexity Low_complexity 1 102 0 554 311 65 27 chr12 68383128 68383388 -75899101 + MLT1J2 LTR MaLR 10 279 -171 261 57 0 0 chr12 68384019 68384054 -75898435 + (CA)n Simple_repeat Simple_repeat 2 36 0 343 332 121 5 chr12 68384295 68384485 -75898004 + MIR SINE MIR 50 261 -1 23 0 0 0 chr12 68385847 68385870 -75896619 + AT_rich Low_complexity Low_complexity 1 23 0 2194 119 7 0 chr12 68386186 68386496 -75895993 - AluSx SINE Alu 0 312 1 944 173 25 5 chr12 68386506 68386708 -75895781 - L1MA9 LINE L1 -25 6287 6082 470 157 0 0 chr12 68386708 68386791 -75895698 + FRAM SINE Alu 69 151 -25 23 33 0 0 chr12 68386864 68386894 -75895595 + AT_rich Low_complexity Low_complexity 1 30 0 238 0 0 0 chr12 68386958 68386989 -75895500 - L1MA7 LINE L1 -29 6262 6232 21 82 0 0 chr12 68388621 68388670 -75893819 + AT_rich Low_complexity Low_complexity 1 49 0 215 367 11 11 chr12 68388692 68388782 -75893707 - MIR SINE MIR -115 147 58 291 291 99 21 chr12 68389070 68389211 -75893278 + MIR SINE MIR 55 206 -56 305 245 49 39 chr12 68389455 68389557 -75892932 + MIR SINE MIR 154 256 -6 182 61 0 61 chr12 68389758 68389791 -75892698 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 24 77 0 0 chr12 68389796 68389848 -75892641 + AT_rich Low_complexity Low_complexity 1 52 0 61 45 0 0 chr12 68389881 68389970 -75892519 + AT_rich Low_complexity Low_complexity 1 89 0 26 0 0 0 chr12 68390013 68390039 -75892450 + AT_rich Low_complexity Low_complexity 1 26 0 2975 209 46 10 chr12 68390087 68390715 -75891774 + MER82 DNA MER2_type 1 651 -2 534 258 117 14 chr12 68390905 68391118 -75891371 - L1MC/D LINE L1 -608 5562 5325 333 250 58 52 chr12 68391270 68391442 -75891047 - L1ME4a LINE L1 -17 6104 5932 1722 240 58 16 chr12 68391520 68392004 -75890485 - HsTC2a DNA Tc2 -237 507 4 212 241 25 13 chr12 68392014 68392093 -75890396 + (TA)n Simple_repeat Simple_repeat 1 80 0 24 53 0 0 chr12 68394207 68394245 -75888244 + AT_rich Low_complexity Low_complexity 1 38 0 23 68 0 0 chr12 68394345 68394389 -75888100 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr12 68394401 68394423 -75888066 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr12 68395315 68395339 -75887150 + AT_rich Low_complexity Low_complexity 1 24 0 1424 220 34 24 chr12 68395686 68396064 -75886425 + L1MA10 LINE L1 5950 6331 -3 21 57 0 0 chr12 68396373 68396408 -75886081 + AT_rich Low_complexity Low_complexity 1 35 0 182 411 11 0 chr12 68396448 68396538 -75885951 - MIR SINE MIR -65 143 53 571 214 29 21 chr12 68397857 68397997 -75884492 + Tigger4(Zombi) DNA MER2_type 1 141 -2590 945 211 111 85 chr12 68398041 68398463 -75884026 + MLT1D LTR MaLR 31 467 0 357 277 79 45 chr12 68398606 68398783 -75883706 + L1MC4a LINE L1 5750 5932 -1876 2355 111 35 44 chr12 68398793 68399224 -75883265 + LTR23 LTR ERV1 1 427 -10 22 56 0 0 chr12 68399290 68399326 -75883163 + AT_rich Low_complexity Low_complexity 1 36 0 797 220 136 79 chr12 68399571 68400102 -75882387 + MER34B LTR ERV1 5 565 0 265 311 41 10 chr12 68401175 68401371 -75881118 + L1ME4a LINE L1 5732 5933 -188 214 373 13 0 chr12 68401910 68401985 -75880504 - MIR3 SINE MIR -45 163 88 429 290 54 102 chr12 68402505 68402840 -75879649 + MLT1I LTR MaLR 77 395 -14 1331 138 61 0 chr12 68403340 68403587 -75878902 - L1MA8 LINE L1 -3 6288 6027 256 351 53 8 chr12 68403996 68404127 -75878362 + MIR3 SINE MIR 69 205 -3 213 39 0 0 chr12 68404298 68404324 -75878165 + (A)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr12 68404545 68404568 -75877921 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr12 68405636 68405666 -75876823 + AT_rich Low_complexity Low_complexity 1 30 0 181 353 14 69 chr12 68406889 68407107 -75875382 + L2 LINE L2 2525 2730 -584 2143 97 17 0 chr12 68407336 68407625 -75874864 - AluSp SINE Alu -19 294 1 23 54 0 0 chr12 68408037 68408074 -75874415 + AT_rich Low_complexity Low_complexity 1 37 0 272 265 12 24 chr12 68409638 68409721 -75872768 - L2 LINE L2 0 3313 3232 359 315 0 37 chr12 68410644 68410752 -75871737 - L2 LINE L2 0 3272 3169 6481 177 70 25 chr12 68411016 68412544 -75869945 + MER52A LTR ERV1 1 1755 0 23 0 0 0 chr12 68414405 68414428 -75868061 + AT_rich Low_complexity Low_complexity 1 23 0 810 217 161 46 chr12 68414853 68415176 -75867313 - MLT1A1 LTR MaLR -5 360 1 258 222 32 48 chr12 68415284 68415347 -75867142 + MLT1H LTR MaLR 230 291 -258 406 283 35 41 chr12 68416013 68416158 -75866331 - L2 LINE L2 -2 3311 3168 489 260 48 67 chr12 68416175 68416383 -75866106 - MER105 DNA DNA 0 204 1 230 235 47 24 chr12 68417974 68418059 -75864430 + L1MC4 LINE L1 6615 6701 -1341 438 186 0 0 chr12 68418061 68418147 -75864342 + (TA)n Simple_repeat Simple_repeat 2 87 0 213 39 0 0 chr12 68418147 68418173 -75864316 + (GA)n Simple_repeat Simple_repeat 2 27 0 401 276 45 12 chr12 68418322 68418527 -75863962 + L1ME3 LINE L1 5609 5829 -333 562 269 140 16 chr12 68418706 68418899 -75863590 + MLT1C-int LTR MaLR 707 923 -448 1726 229 55 48 chr12 68418975 68419408 -75863081 + MLT1C-int LTR MaLR 922 1357 -14 1500 244 56 14 chr12 68419436 68419867 -75862622 + MLT1C LTR MaLR 10 458 -9 223 360 18 9 chr12 68419968 68420079 -75862410 - MIR SINE MIR -61 147 36 297 0 0 0 chr12 68420140 68420173 -75862316 + (TG)n Simple_repeat Simple_repeat 1 33 0 2083 126 70 3 chr12 68420729 68421070 -75861419 - THE1B LTR MaLR 0 364 1 9376 127 38 48 chr12 68421070 68422561 -75859928 - THE1B-int LTR MaLR 0 1580 103 2551 99 6 0 chr12 68422561 68422914 -75859575 + THE1A LTR MaLR 1 355 0 9376 127 38 48 chr12 68422914 68423017 -75859472 - THE1B-int LTR MaLR -1477 103 1 2448 125 14 0 chr12 68423017 68423376 -75859113 - THE1B LTR MaLR 0 364 1 200 225 250 0 chr12 68423650 68423730 -75858759 + MIR SINE MIR 44 143 -65 360 43 0 0 chr12 68423966 68424012 -75858477 + (CA)n Simple_repeat Simple_repeat 2 47 0 250 232 29 0 chr12 68424016 68424085 -75858404 + (TA)n Simple_repeat Simple_repeat 1 71 0 22 56 0 0 chr12 68424345 68424381 -75858108 + AT_rich Low_complexity Low_complexity 1 36 0 324 358 68 27 chr12 68425566 68425787 -75856702 - MIR SINE MIR -13 249 20 21 0 0 0 chr12 68427514 68427535 -75854954 + AT_rich Low_complexity Low_complexity 1 21 0 1081 155 24 44 chr12 68429110 68429316 -75853173 - AluJo SINE Alu -26 286 85 244 185 0 31 chr12 68429720 68429785 -75852704 + A-rich Low_complexity Low_complexity 3 65 0 863 203 0 11 chr12 68430371 68430548 -75851941 + L1PB4 LINE L1 5965 6139 -17 21 89 0 0 chr12 68432561 68432617 -75849872 + AT_rich Low_complexity Low_complexity 1 56 0 612 250 146 32 chr12 68432726 68432946 -75849543 - MIR SINE MIR 0 262 18 1503 205 131 30 chr12 68433157 68433616 -75848873 - MLT1D LTR MaLR 0 505 1 238 321 63 38 chr12 68433880 68434051 -75848438 + MIR SINE MIR 18 192 -62 21 57 0 0 chr12 68434240 68434275 -75848214 + AT_rich Low_complexity Low_complexity 1 35 0 203 294 108 20 chr12 68434284 68434386 -75848103 - MIR SINE MIR -71 191 81 240 149 0 0 chr12 68435103 68435150 -75847339 + (TG)n Simple_repeat Simple_repeat 2 48 0 273 288 79 65 chr12 68435332 68435471 -75847018 + MIR SINE MIR 88 228 -34 25 65 0 0 chr12 68435523 68435569 -75846920 + AT_rich Low_complexity Low_complexity 1 46 0 31 44 0 0 chr12 68435702 68435747 -75846742 + AT_rich Low_complexity Low_complexity 1 45 0 27 29 0 0 chr12 68436284 68436318 -75846171 + AT_rich Low_complexity Low_complexity 1 34 0 638 306 0 0 chr12 68438969 68439155 -75843334 + LTR16B LTR ERVL 1 186 -278 274 282 56 0 chr12 68439186 68439257 -75843232 + L3 LINE CR1 1342 1416 -161 290 275 138 29 chr12 68439259 68439397 -75843092 - MIR SINE MIR -74 188 36 1961 138 0 0 chr12 68439876 68440159 -75842330 - AluSq SINE Alu -30 283 1 217 365 85 16 chr12 68441239 68441428 -75841061 + MIR SINE MIR 54 255 -7 1573 160 0 39 chr12 68441746 68442054 -75840435 - AluJb SINE Alu 0 308 12 21 0 0 0 chr12 68442072 68442093 -75840396 + AT_rich Low_complexity Low_complexity 1 21 0 2393 110 21 19 chr12 68442262 68442636 -75839853 - THE1C LTR MaLR 0 375 1 9851 124 36 9 chr12 68442636 68444175 -75838314 - THE1C-int LTR MaLR 0 1580 1 1926 134 111 18 chr12 68444175 68444518 -75837971 - THE1C LTR MaLR 0 375 1 1921 151 20 0 chr12 68445241 68445539 -75836950 - AluSx SINE Alu -6 306 3 204 128 21 43 chr12 68445615 68445662 -75836827 + T-rich Low_complexity Low_complexity 1 46 0 328 238 232 24 chr12 68446238 68446406 -75836083 + L2 LINE L2 3110 3312 -1 396 323 132 5 chr12 68446510 68446730 -75835759 + MIR SINE MIR 1 248 -14 289 372 44 6 chr12 68447262 68447445 -75835044 - L2 LINE L2 0 3313 3124 190 329 94 12 chr12 68448446 68448531 -75833958 - L2 LINE L2 -25 3288 3197 26 0 0 0 chr12 68448805 68448831 -75833658 + AT_rich Low_complexity Low_complexity 1 26 0 1296 270 69 35 chr12 68449682 68450116 -75832373 + MER21B LTR ERV1 363 811 -52 1623 174 7 10 chr12 68450138 68450426 -75832063 + AluJo SINE Alu 1 287 -25 195 375 77 0 chr12 68451299 68451403 -75831086 + MIR SINE MIR 34 145 -63 966 192 25 20 chr12 68451444 68451722 -75830767 + MER39 LTR ERV1 189 519 -188 2199 195 18 0 chr12 68451742 68452126 -75830363 - MSTD LTR MaLR -2 394 4 1010 107 19 93 chr12 68452130 68452335 -75830154 + MER39 LTR ERV1 518 707 0 861 207 7 0 chr12 68453192 68453362 -75829127 + AluJb SINE Alu 133 303 0 21 36 0 0 chr12 68453736 68453764 -75828725 + AT_rich Low_complexity Low_complexity 1 28 0 2444 170 52 11 chr12 68455043 68455507 -75826982 + MER31A LTR ERV1 3 485 0 384 279 142 25 chr12 68455664 68455868 -75826621 + MIR SINE MIR 12 239 -23 1513 142 79 57 chr12 68455870 68456237 -75826252 + THE1C LTR MaLR 1 375 0 475 214 68 0 chr12 68457103 68457206 -75825283 + MER20 DNA MER1_type 9 118 -101 728 262 36 0 chr12 68457207 68457375 -75825114 + MER96 DNA MER1_type? 2 175 0 385 151 244 0 chr12 68457375 68457459 -75825030 + MER20 DNA MER1_type 111 215 -4 192 135 0 0 chr12 68457889 68457926 -75824563 + (CA)n Simple_repeat Simple_repeat 1 37 0 1693 98 95 0 chr12 68458019 68458283 -75824206 + L1PA10 LINE L1 5877 6165 -3 389 275 104 17 chr12 68459272 68459462 -75823027 - MIR SINE MIR -18 244 38 1742 183 19 35 chr12 68460537 68460909 -75821580 + MLT1A2 LTR MaLR 4 369 -5 222 306 48 0 chr12 68461063 68461125 -75821364 - L2 LINE L2 0 3313 3249 297 151 0 0 chr12 68461132 68461185 -75821304 + (CA)n Simple_repeat Simple_repeat 2 54 0 245 385 52 56 chr12 68461207 68461438 -75821051 - L2 LINE L2 -111 3161 2932 224 370 179 3 chr12 68461587 68461884 -75820605 - L2 LINE L2 -560 2754 2406 27 0 0 0 chr12 68461908 68461935 -75820554 + AT_rich Low_complexity Low_complexity 1 27 0 413 293 22 39 chr12 68463191 68463384 -75819105 + MIR SINE MIR 7 191 -57 731 253 19 42 chr12 68464137 68464398 -75818091 - MIR SINE MIR -3 259 5 384 325 104 59 chr12 68464768 68465032 -75817457 + L1MEd LINE L1 120 371 -5748 348 94 0 0 chr12 68465032 68465085 -75817404 + (CA)n Simple_repeat Simple_repeat 2 54 0 384 325 104 59 chr12 68465085 68465444 -75817045 + L1MEd LINE L1 371 771 -5348 23 0 0 0 chr12 68465804 68465827 -75816662 + AT_rich Low_complexity Low_complexity 1 23 0 432 264 114 62 chr12 68466151 68466720 -75815769 + L1M4 LINE L1 4245 4843 -1303 450 36 0 0 chr12 68466721 68466777 -75815712 + (CA)n Simple_repeat Simple_repeat 1 56 0 770 266 19 10 chr12 68466932 68467139 -75815350 - MER3 DNA MER1_type 0 209 1 324 274 144 61 chr12 68467148 68467411 -75815078 + L1M4 LINE L1 5051 5335 -811 23 54 0 0 chr12 68468120 68468157 -75814332 + AT_rich Low_complexity Low_complexity 1 37 0 726 284 68 9 chr12 68469801 68470023 -75812466 + MIR SINE MIR 28 262 0 306 348 43 22 chr12 68470391 68470529 -75811960 + L3 LINE CR1 1410 1550 -27 29 78 0 0 chr12 68473306 68473370 -75809119 + AT_rich Low_complexity Low_complexity 1 64 0 853 223 45 73 chr12 68474526 68474781 -75807708 - MLT1A1 LTR MaLR -2 363 158 1946 96 0 63 chr12 68474781 68475121 -75807368 - AluY SINE Alu 0 321 1 853 223 45 73 chr12 68475121 68475275 -75807214 - MLT1A1 LTR MaLR -207 158 1 1491 140 60 0 chr12 68475487 68475722 -75806767 + AluSq SINE Alu 1 249 -64 1033 175 9 28 chr12 68476676 68476887 -75805602 - Tigger1 DNA MER2_type 0 2418 2212 3909 9 0 0 chr12 68476887 68477324 -75805165 - L1PA2 LINE L1 -222 5933 5497 1732 0 0 0 chr12 68477324 68477517 -75804972 + L1PA2 LINE L1 5958 6152 -3 6099 113 20 17 chr12 68477523 68478475 -75804014 - Tigger1 DNA MER2_type -197 2221 1267 1008 113 0 0 chr12 68478761 68478894 -75803595 - AluSq/x SINE Alu -179 133 1 456 313 112 29 chr12 68478921 68479234 -75803255 - MLT1I LTR MaLR 0 409 71 4025 132 11 2 chr12 68479383 68480012 -75802477 - MER41B LTR ERV1 0 635 1 626 124 10 0 chr12 68482091 68482188 -75800301 + THE1B LTR MaLR 267 364 0 9375 137 40 7 chr12 68482188 68483717 -75798772 + THE1C-int LTR MaLR 1 1580 0 2258 140 11 19 chr12 68483717 68484095 -75798394 + THE1C LTR MaLR 1 375 0 1446 178 34 4 chr12 68484095 68484364 -75798125 + MLT1A1 LTR MaLR 89 365 0 1635 221 87 80 chr12 68485599 68486233 -75796256 + LTR48B LTR ERV1 7 644 0 394 301 65 32 chr12 68487348 68487534 -75794955 + MIR SINE MIR 70 261 -1 851 223 61 5 chr12 68488069 68488266 -75794223 - MER58A DNA MER1_type -15 209 2 264 185 0 0 chr12 68488358 68488412 -75794077 + (CA)n Simple_repeat Simple_repeat 1 54 0 357 287 66 61 chr12 68489229 68489410 -75793079 - MIR SINE MIR -60 202 21 338 291 47 0 chr12 68489586 68489672 -75792817 + L2 LINE L2 3215 3304 -9 2143 91 0 18 chr12 68490100 68490386 -75792103 + AluY SINE Alu 21 301 -10 723 230 110 0 chr12 68490477 68490668 -75791821 + MIR SINE MIR 51 262 0 286 266 121 58 chr12 68491144 68491317 -75791172 + L3 LINE CR1 1166 1349 -228 25 0 0 0 chr12 68492102 68492127 -75790362 + AT_rich Low_complexity Low_complexity 1 25 0 2043 154 0 3 chr12 68492446 68492751 -75789738 + AluSx SINE Alu 1 304 -8 253 294 15 0 chr12 68493198 68493266 -75789223 + MER20B DNA MER1_type 48 116 -667 1543 191 64 14 chr12 68493275 68493621 -75788868 + MLT1A1 LTR MaLR 1 363 -2 233 267 81 12 chr12 68493623 68493709 -75788780 + MER20B DNA MER1_type 116 207 -576 626 265 85 40 chr12 68495023 68495246 -75787243 - MIR SINE MIR -2 260 28 246 310 121 0 chr12 68496037 68496153 -75786336 - L2 LINE L2 -1 3312 3183 402 293 158 0 chr12 68496156 68496378 -75786111 + MIR SINE MIR 5 261 -1 414 0 0 0 chr12 68497960 68498006 -75784483 + (TG)n Simple_repeat Simple_repeat 2 47 0 203 88 29 0 chr12 68498944 68498978 -75783511 + (TCC)n Simple_repeat Simple_repeat 1 35 0 1652 190 7 3 chr12 68500070 68500359 -75782130 + AluJo SINE Alu 1 290 -22 858 275 145 26 chr12 68500445 68500784 -75781705 - MLT1G LTR MaLR -48 542 154 * 958 240 75 26 chr12 68500782 68501115 -75781374 - MLT1E2 LTR MaLR -39 615 199 * 1501 195 53 26 chr12 68501109 68501448 -75781041 - MLT1A2 LTR MaLR -18 356 9 855 141 0 67 chr12 68501551 68501700 -75780789 + U4 snRNA snRNA 6 144 -1 224 0 65 0 chr12 68501704 68501735 -75780754 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2006 313 34 27 chr12 68501766 68502555 -75779934 + ERVL LTR ERVL 2299 3093 -1903 2006 310 66 58 chr12 68503020 68504398 -75778091 + ERVL LTR ERVL 3155 4733 -621 23 0 0 0 chr12 68504766 68504789 -75777700 + AT_rich Low_complexity Low_complexity 1 23 0 405 238 7 0 chr12 68504844 68504994 -75777495 - L1ME1 LINE L1 -5 6161 5964 203 382 0 39 chr12 68505586 68505688 -75776801 + L2 LINE L2 2577 2674 -640 404 323 86 14 chr12 68506716 68506936 -75775553 - MIR SINE MIR -13 249 14 647 281 61 40 chr12 68507156 68507386 -75775103 + MIR SINE MIR 3 235 -27 858 48 0 0 chr12 68507412 68507544 -75774945 + L1PA5 LINE L1 6039 6170 0 1551 204 4 4 chr12 68509423 68509702 -75772787 - AluJo SINE Alu -28 284 6 1228 337 94 34 chr12 68509743 68510669 -75771820 + L2 LINE L2 1792 2773 -541 818 293 59 63 chr12 68510688 68511018 -75771471 + MLT1J LTR MaLR 5 334 -177 2272 188 188 10 chr12 68511018 68511618 -75770871 + MER39 LTR ERV1 1 707 0 818 293 59 63 chr12 68511618 68511795 -75770694 + MLT1J LTR MaLR 334 510 -1 237 297 51 25 chr12 68511831 68511949 -75770540 + MER94 DNA DNA 13 133 -1 293 345 127 63 chr12 68511958 68512352 -75770137 + L2 LINE L2 2816 3234 -38 2313 93 0 16 chr12 68512505 68512816 -75769673 - AluSg SINE Alu -4 306 1 1551 183 143 13 chr12 68513093 68513486 -75769003 + LTR54B LTR ERV1 21 464 -34 797 253 129 32 chr12 68514067 68514221 -75768268 - Charlie4a DNA MER1_type -1475 486 348 2096 136 3 0 chr12 68514221 68514515 -75767974 - AluSx SINE Alu -17 295 1 797 253 129 32 chr12 68514515 68514802 -75767687 - Charlie4a DNA MER1_type -1613 348 2 2917 79 10 22 chr12 68514947 68515352 -75767137 + MLT2A1 LTR ERVL 1 400 -44 405 229 0 0 chr12 68515355 68515486 -75767003 + (TA)n Simple_repeat Simple_repeat 1 131 0 308 303 22 0 chr12 68515487 68515576 -75766913 + L1MC4 LINE L1 6613 6703 -1339 340 207 18 0 chr12 68515578 68515689 -75766800 + (TA)n Simple_repeat Simple_repeat 1 113 0 797 121 23 15 chr12 68515730 68515862 -75766627 - HERVL LTR ERVL -3441 2213 2081 * 20658 70 6 0 chr12 68515855 68518469 -75764020 + HERVL-A1 LTR ERVL 3026 5654 0 3321 85 0 11 chr12 68518469 68518916 -75763573 + MLT2A1 LTR ERVL 1 442 -2 218 171 0 0 chr12 68519122 68519157 -75763332 + (ATG)n Simple_repeat Simple_repeat 1 35 0 280 340 201 0 chr12 68519347 68519615 -75762874 - L2 LINE L2 -993 2321 2000 30 77 0 0 chr12 68520213 68520278 -75762211 + AT_rich Low_complexity Low_complexity 1 65 0 696 298 71 23 chr12 68520695 68521665 -75760824 - L1ME3 LINE L1 -237 5994 4974 23 0 0 0 chr12 68521805 68521828 -75760661 + AT_rich Low_complexity Low_complexity 1 23 0 341 298 101 0 chr12 68521926 68522104 -75760385 - L1ME3 LINE L1 -4689 1707 1512 1971 148 0 0 chr12 68522538 68522829 -75759660 - AluSx SINE Alu -21 291 1 23 33 0 0 chr12 68523472 68523502 -75758987 + AT_rich Low_complexity Low_complexity 1 30 0 23 86 0 0 chr12 68523939 68523997 -75758492 + AT_rich Low_complexity Low_complexity 1 58 0 2494 149 15 25 chr12 68524306 68524781 -75757708 - L1MC1 LINE L1 0 6333 5864 248 339 99 51 chr12 68524897 68525272 -75757217 - L2 LINE L2 -9 3304 2912 1789 170 3 3 chr12 68525399 68525708 -75756781 + AluJb SINE Alu 1 309 0 450 0 0 0 chr12 68525944 68525994 -75756495 + (GAAA)n Simple_repeat Simple_repeat 1 50 0 405 329 82 10 chr12 68526161 68526368 -75756121 - L2 LINE L2 -756 2558 2337 209 106 0 21 chr12 68526368 68526415 -75756074 + (TA)n Simple_repeat Simple_repeat 2 47 0 1817 155 29 0 chr12 68526511 68526788 -75755701 + AluSx SINE Alu 10 294 -18 202 29 57 0 chr12 68526791 68526826 -75755663 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 202 245 20 0 chr12 68526850 68526899 -75755590 - L2 LINE L2 -1082 2232 2183 248 237 17 0 chr12 68526899 68526958 -75755531 - L2 LINE L2 -1102 2212 2153 1540 205 49 23 chr12 68527077 68527463 -75755026 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr12 68528126 68528148 -75754341 + AT_rich Low_complexity Low_complexity 1 22 0 2551 50 0 0 chr12 68528700 68529002 -75753487 + AluY SINE Alu 1 302 -9 221 75 75 0 chr12 68530025 68530078 -75752411 + (TA)n Simple_repeat Simple_repeat 2 58 0 188 232 101 43 chr12 68530092 68530161 -75752328 - L3 LINE CR1 -54 1523 1451 1862 119 26 15 chr12 68530162 68530473 -75752016 - AluSx SINE Alu 0 325 12 635 313 38 58 chr12 68530697 68531010 -75751479 - L3 LINE CR1 -438 1139 833 448 229 20 52 chr12 68531018 68531171 -75751318 - LTR67 LTR ERVL -7 550 403 239 303 13 0 chr12 68531283 68531359 -75751130 - LTR67 LTR ERVL -479 78 2 2521 139 53 83 chr12 68531407 68531938 -75750551 + MLT2B2 LTR ERVL 1 515 0 283 314 138 19 chr12 68532258 68532417 -75750072 - MER5A DNA MER1_type -11 178 1 429 224 158 0 chr12 68532683 68532835 -75749654 - L1MC4a LINE L1 -1789 6019 5844 21 36 0 0 chr12 68532862 68532890 -75749599 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 68533131 68533155 -75749334 + AT_rich Low_complexity Low_complexity 1 24 0 1900 71 0 4 chr12 68533203 68533441 -75749048 - AluY SINE Alu -9 302 66 398 232 21 0 chr12 68533468 68533563 -75748926 - MLT1A1 LTR MaLR 0 365 269 * 681 237 36 40 chr12 68533547 68533771 -75748718 + MLT1D LTR MaLR 115 337 -168 742 171 0 0 chr12 68733864 68733981 -75548508 + FLAM_C SINE Alu 1 117 -16 1333 129 0 5 chr12 68734004 68734205 -75548284 + AluSg/x SINE Alu 81 280 -32 298 56 19 37 chr12 68734205 68734259 -75548230 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 834 129 7 50 chr12 68734815 68734954 -75547535 - FLAM_C SINE Alu 0 133 1 2173 119 0 0 chr12 68735086 68735388 -75547101 + AluSx SINE Alu 1 302 -10 675 157 128 12 chr12 68735634 68735806 -75546683 + L1MB8 LINE L1 5987 6178 0 1659 166 82 22 chr12 68736151 68736349 -75546140 + L1MB3 LINE L1 5807 5992 -191 1857 128 24 7 chr12 68736349 68736645 -75545844 - AluSx SINE Alu -10 302 2 1659 166 82 22 chr12 68736645 68736802 -75545687 + L1MB3 LINE L1 5992 6183 0 1356 137 119 47 chr12 68737131 68737408 -75545081 + AluJb SINE Alu 1 297 -15 1448 169 4 0 chr12 68737864 68738095 -75544394 + AluSx SINE Alu 4 235 -77 1732 130 4 19 chr12 68738129 68738399 -75544090 + AluJo SINE Alu 2 267 -45 2050 114 0 0 chr12 68739008 68739288 -75543201 + AluSx SINE Alu 2 281 -31 588 143 0 0 chr12 68739293 68739391 -75543098 + (TG)n Simple_repeat Simple_repeat 2 99 0 225 191 0 0 chr12 68739391 68739438 -75543051 + L1MC4 LINE L1 6652 6698 -1344 * 228 195 0 0 chr12 68739408 68739449 -75543040 - L1MC4 LINE L1 -1340 6702 6662 688 140 0 0 chr12 68739455 68739555 -75542934 - AluJb SINE Alu -208 104 5 203 299 222 8 chr12 68740408 68740525 -75541964 + MIR SINE MIR 20 161 -101 1571 139 90 0 chr12 68740566 68740833 -75541656 + AluJo SINE Alu 1 291 -21 550 174 0 41 chr12 68740908 68741006 -75541483 + FLAM_A SINE Alu 23 116 -26 2076 116 6 25 chr12 68741013 68741331 -75541158 - AluSq SINE Alu -1 312 1 686 121 0 0 chr12 68741474 68741611 -75540878 - AluSg/x SINE Alu 0 328 192 285 97 0 48 chr12 68743003 68743065 -75539424 + (TCCCC)n Simple_repeat Simple_repeat 3 61 0 348 223 0 0 chr12 68743117 68743256 -75539233 + C-rich Low_complexity Low_complexity 1 139 0 22 0 0 0 chr12 68743256 68743278 -75539211 + GC_rich Low_complexity Low_complexity 1 22 0 280 297 5 32 chr12 68743278 68743463 -75539026 + (CCCCG)n Simple_repeat Simple_repeat 1 180 0 994 131 0 0 chr12 68743610 68743755 -75538734 - AluSq/x SINE Alu -167 145 1 251 246 0 0 chr12 68743755 68743812 -75538677 + MIR SINE MIR 101 157 -105 1032 177 0 0 chr12 68743880 68744055 -75538434 - AluSg/x SINE Alu -4 308 134 2324 70 0 0 chr12 68744055 68744353 -75538136 - AluY SINE Alu -13 298 1 1815 150 3 20 chr12 68744924 68745230 -75537259 + AluJb SINE Alu 1 301 -11 808 205 0 0 chr12 68745230 68745386 -75537103 + AluJb SINE Alu 134 289 -23 301 183 128 12 chr12 68745567 68745731 -75536758 + AluSp SINE Alu 37 219 -84 309 52 0 31 chr12 68746047 68746095 -75536394 - Alu SINE Alu -262 41 1 1909 110 11 14 chr12 68746417 68746740 -75535749 + AluSx SINE Alu 1 322 0 2170 42 49 3 chr12 68746779 68747065 -75535424 + AluY SINE Alu 1 299 -12 1910 156 0 0 chr12 68747278 68747579 -75534910 + AluJb SINE Alu 1 301 -11 2145 94 0 0 chr12 68747579 68747865 -75534624 + AluSc SINE Alu 22 307 -2 631 265 115 5 chr12 68747866 68748066 -75534423 + MIR SINE MIR 40 261 -1 2199 104 3 0 chr12 68748586 68748884 -75533605 - AluSg SINE Alu -11 299 1 953 170 177 90 chr12 68748965 68749097 -75533392 - AluJo SINE Alu -1 301 182 2283 88 3 10 chr12 68749097 68749405 -75533084 - AluSc SINE Alu -3 306 1 953 170 177 90 chr12 68749405 68749549 -75532940 - AluJo SINE Alu -120 182 1 2298 74 7 0 chr12 68749570 68749868 -75532621 - AluY SINE Alu -11 300 1 1496 150 35 0 chr12 68749884 68750144 -75532345 - AluJb SINE Alu -23 289 21 1525 190 3 22 chr12 68750382 68750698 -75531791 - AluJo SINE Alu -2 310 1 207 114 0 0 chr12 68751379 68751414 -75531075 + (TG)n Simple_repeat Simple_repeat 2 36 0 524 207 45 0 chr12 68751417 68751528 -75530961 - AluJb SINE Alu -196 116 1 234 176 77 143 chr12 68751610 68751646 -75530843 - MIR SINE MIR -10 252 215 2209 78 0 10 chr12 68751646 68751955 -75530534 - AluY SINE Alu -5 306 1 234 176 77 143 chr12 68751955 68752009 -75530480 - MIR SINE MIR -47 215 168 1610 40 0 10 chr12 68752770 68752968 -75529521 + L1PA5 LINE L1 5958 6153 -1 2069 116 3 7 chr12 68753487 68753788 -75528701 + AluSx SINE Alu 1 300 -12 2280 90 10 3 chr12 68753947 68754257 -75528232 + AluSx SINE Alu 1 312 0 1628 182 0 10 chr12 68754519 68754816 -75527673 + AluJo SINE Alu 11 304 -8 299 300 119 81 chr12 68755005 68755795 -75526694 - L2 LINE L2 -815 2499 1741 482 0 0 17 chr12 68755795 68755854 -75526635 + (TATG)n Simple_repeat Simple_repeat 4 61 0 1989 98 7 18 chr12 68755854 68756140 -75526349 - AluSx SINE Alu -29 283 1 299 300 119 81 chr12 68756140 68756285 -75526204 - L2 LINE L2 -1572 1742 1527 2364 162 36 7 chr12 68757518 68757932 -75524557 + MSTB LTR MaLR 1 426 0 1150 112 27 5 chr12 68757932 68758119 -75524370 + MSTB-int LTR MaLR 1 191 -1460 1494 183 17 3 chr12 68758119 68758414 -75524075 + AluJb SINE Alu 1 299 -13 1036 189 0 0 chr12 68758414 68758583 -75523906 - HSMAR2 DNA Mariner -801 501 333 719 155 69 0 chr12 68758613 68758729 -75523760 - FLAM_C SINE Alu -18 125 2 1027 94 34 0 chr12 68758730 68758879 -75523610 - HSMAR2 DNA Mariner -964 338 185 1013 163 0 0 chr12 68758879 68759057 -75523432 + AluSg/x SINE Alu 133 310 0 1320 65 5 89 chr12 68759057 68759220 -75523269 - HSMAR2 DNA Mariner -1106 196 54 1586 200 40 0 chr12 68759220 68759520 -75522969 - AluJb SINE Alu 0 312 1 1320 65 5 89 chr12 68759520 68759570 -75522919 - HSMAR2 DNA Mariner -1248 54 1 190 343 76 9 chr12 68759595 68759700 -75522789 - L2 LINE L2 -14 3258 3147 306 193 277 0 chr12 68759811 68759894 -75522595 - MIR SINE MIR -56 206 101 1203 188 175 0 chr12 68760027 68760267 -75522222 + AluJb SINE Alu 2 283 -19 288 0 0 0 chr12 68760275 68760307 -75522182 + (CA)n Simple_repeat Simple_repeat 1 32 0 830 111 8 8 chr12 68760402 68760519 -75521970 + AluJb SINE Alu 1 117 -195 2170 85 10 3 chr12 68760636 68760929 -75521560 - AluSq SINE Alu -18 295 1 2028 111 10 0 chr12 68762028 68762317 -75520172 - AluSq SINE Alu -21 292 1 734 243 65 0 chr12 68763049 68763218 -75519271 - MER58A DNA MER1_type -2 222 43 661 211 15 8 chr12 68763345 68763478 -75519011 + AluJo SINE Alu 2 135 -177 1585 181 102 61 chr12 68763537 68763763 -75518726 - LTR40c LTR ERVL -5 460 245 1860 126 4 0 chr12 68763763 68764025 -75518464 - AluSx SINE Alu -49 263 1 1585 181 102 61 chr12 68764025 68764156 -75518333 - LTR40c LTR ERVL -220 245 79 1486 122 0 0 chr12 68764156 68764361 -75518128 + AluSq SINE Alu 86 290 -23 1585 181 102 61 chr12 68764361 68764444 -75518045 - LTR40c LTR ERVL -386 79 1 1704 172 3 0 chr12 68765072 68765369 -75517120 - AluJb SINE Alu -14 298 1 2480 59 0 0 chr12 68765580 68765886 -75516603 - AluSg SINE Alu -4 306 1 2369 176 58 43 chr12 68766482 68766941 -75515548 + MLT1F LTR MaLR 1 471 -71 2155 95 13 0 chr12 68766941 68767245 -75515244 - AluSp SINE Alu -5 308 1 2369 176 58 43 chr12 68767245 68767319 -75515170 + MLT1F LTR MaLR 471 542 0 266 86 328 17 chr12 68767372 68767430 -75515059 - MADE1 DNA Mariner 0 80 5 2344 87 0 3 chr12 68767549 68767860 -75514629 + AluSq SINE Alu 1 310 -3 1568 157 32 18 chr12 68768203 68768484 -75514005 - AluJb SINE Alu -27 285 1 686 139 177 70 chr12 68768488 68768646 -75513843 - FRAM SINE Alu -9 167 1 395 208 58 117 chr12 68768662 68768816 -75513673 + LTR45B LTR ERV1 330 474 -15 2258 73 0 10 chr12 68770128 68770440 -75512049 - AluSq SINE Alu 0 309 1 270 174 29 72 chr12 68770652 68770721 -75511768 - MIR SINE MIR -73 189 124 1491 106 138 0 chr12 68770780 68771026 -75511463 - AluSx SINE Alu -32 280 1 269 57 0 0 chr12 68771119 68771154 -75511335 + MADE1 DNA Mariner 2 36 -44 215 234 16 0 chr12 68771274 68771338 -75511151 + L2 LINE L2 2994 3058 -214 2271 82 7 3 chr12 68771518 68771821 -75510668 + AluSp SINE Alu 1 304 -9 683 287 178 18 chr12 68771828 68772284 -75510205 - MLT1L LTR MaLR -68 547 19 502 276 11 63 chr12 68772316 68772490 -75509999 - MIR SINE MIR -30 232 68 1880 98 0 0 chr12 68772490 68772744 -75509745 + AluSx SINE Alu 46 299 -13 1857 133 20 17 chr12 68772909 68773203 -75509286 + AluJb SINE Alu 1 295 -17 243 0 0 0 chr12 68773270 68773297 -75509192 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1847 128 0 17 chr12 68773299 68773587 -75508902 - AluSx SINE Alu -29 283 1 1644 165 6 44 chr12 68773665 68773981 -75508508 - AluJo SINE Alu -8 304 1 495 176 12 0 chr12 68774006 68774091 -75508398 - FLAM_A SINE Alu -17 125 40 1715 104 86 4 chr12 68774232 68774510 -75507979 - AluSq SINE Alu -12 301 1 239 282 122 39 chr12 68774780 68774936 -75507553 + MIR SINE MIR 33 201 -61 273 215 47 65 chr12 68775199 68775306 -75507183 + MIR SINE MIR 110 214 -48 272 222 7 56 chr12 68776256 68776400 -75506089 + (CGGGG)n Simple_repeat Simple_repeat 2 138 0 25 90 0 0 chr12 68776464 68776531 -75505958 + GC_rich Low_complexity Low_complexity 1 67 0 2080 114 17 0 chr12 68778388 68778687 -75503802 - AluSx SINE Alu -7 305 2 285 241 9 69 chr12 68779290 68779406 -75503083 + L2 LINE L2 2950 3058 -214 1731 151 0 53 chr12 68779641 68779959 -75502530 + AluJb SINE Alu 1 301 -11 180 0 0 0 chr12 68780209 68780229 -75502260 + (A)n Simple_repeat Simple_repeat 1 20 0 903 110 0 48 chr12 68780497 68780643 -75501846 + AluJo SINE Alu 1 139 -173 254 309 100 34 chr12 68780909 68781075 -75501414 - MIR3 SINE MIR -36 172 31 241 234 0 39 chr12 68781631 68781708 -75500781 + C-rich Low_complexity Low_complexity 1 74 0 2143 106 0 28 chr12 68782212 68782534 -75499955 + AluSq SINE Alu 1 313 0 1528 163 14 41 chr12 68782590 68782885 -75499604 + AluJo SINE Alu 1 287 -25 2086 114 0 10 chr12 68782889 68783188 -75499301 + AluSx SINE Alu 1 296 -16 2263 77 3 10 chr12 68783190 68783490 -75498999 + AluY SINE Alu 1 298 -13 339 221 44 13 chr12 68783755 68783847 -75498642 - L1MC4 LINE L1 -1333 6989 1995 313 366 16 0 chr12 68783756 68783879 -75498610 + L1MCa LINE L1 1978 2102 -4324 * 990 115 0 0 chr12 68783882 68784021 -75498468 - AluSg/x SINE Alu -8 302 164 1750 134 3 11 chr12 68784037 68784361 -75498128 + AluSx SINE Alu 1 322 0 214 333 0 43 chr12 68784648 68784741 -75497748 - MER5A DNA MER1_type -38 151 63 1457 187 61 7 chr12 68784750 68785028 -75497461 + AluJo SINE Alu 2 294 -8 2193 103 3 0 chr12 68785296 68785598 -75496891 + AluSq SINE Alu 1 303 -10 1531 199 24 3 chr12 68786958 68787250 -75495239 + AluJb SINE Alu 1 298 -14 599 275 55 43 chr12 68787430 68787691 -75494798 + MIR SINE MIR 3 261 -1 1785 114 0 129 chr12 68787714 68788064 -75494425 - AluSx SINE Alu -7 305 1 2237 87 3 3 chr12 68788066 68788366 -75494123 - AluSg SINE Alu -10 300 1 2125 117 3 0 chr12 68788466 68788773 -75493716 + AluSx SINE Alu 1 308 -4 2060 136 0 0 chr12 68788792 68789100 -75493389 + AluSg SINE Alu 1 308 -2 643 133 0 0 chr12 68789157 68789247 -75493242 + AluS SINE Alu 2 91 -222 1834 85 4 0 chr12 68789247 68789483 -75493006 + AluSp SINE Alu 54 290 -23 712 127 36 0 chr12 68789748 68789858 -75492631 + MSTB1 LTR MaLR 318 431 -1 4390 111 30 2 chr12 68789858 68790490 -75491999 - MER39B LTR ERV1 -3 650 1 364 208 136 52 chr12 68790556 68790710 -75491779 - MER34 LTR ERV1 0 542 376 2198 96 7 0 chr12 68790855 68791158 -75491331 + AluSx SINE Alu 1 305 -7 293 107 0 18 chr12 68791194 68791250 -75491239 + (TG)n Simple_repeat Simple_repeat 2 56 0 321 220 34 0 chr12 68791251 68791310 -75491179 - MER34C LTR ERV1 -337 248 188 623 179 0 68 chr12 68791311 68791428 -75491061 + FLAM_A SINE Alu 1 109 -33 720 191 25 32 chr12 68791461 68791618 -75490871 - MER34C LTR ERV1 -390 195 40 25 31 0 0 chr12 68791721 68791753 -75490736 + AT_rich Low_complexity Low_complexity 1 32 0 1938 147 0 3 chr12 68791879 68792172 -75490317 - AluJo SINE Alu -20 292 1 1884 101 0 0 chr12 68792187 68792444 -75490045 - AluSx SINE Alu -6 306 50 1755 152 14 7 chr12 68792705 68792994 -75489495 + AluSx SINE Alu 1 291 -21 323 160 80 60 chr12 68793056 68793156 -75489333 + L1ME1 LINE L1 6054 6155 -11 1410 171 99 0 chr12 68793289 68793388 -75489101 + AluJo SINE Alu 7 95 -217 221 0 0 33 chr12 68793388 68793418 -75489071 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1410 171 99 0 chr12 68793418 68793581 -75488908 + AluJo SINE Alu 95 295 -17 496 298 40 13 chr12 68793582 68793733 -75488756 + L1MC/D LINE L1 5461 5615 -2193 2281 57 0 27 chr12 68794064 68794364 -75488125 + AluY SINE Alu 1 292 -19 2337 66 10 0 chr12 68795392 68795693 -75486796 + AluSp SINE Alu 1 304 -9 644 288 180 18 chr12 68795700 68796155 -75486334 - MLT1L LTR MaLR -68 547 19 482 264 6 69 chr12 68796187 68796346 -75486143 - MIR SINE MIR -30 232 84 1961 88 0 8 chr12 68796362 68796623 -75485866 + AluSc SINE Alu 46 304 -5 743 184 22 0 chr12 68796890 68797026 -75485463 + AluSg/x SINE Alu 160 298 -14 1361 219 10 0 chr12 68797131 68797423 -75485066 + AluSx SINE Alu 1 295 -17 338 292 242 6 chr12 68797849 68798010 -75484479 + MIR SINE MIR 18 216 -46 323 198 31 52 chr12 68799876 68799972 -75482517 - MIR SINE MIR 0 262 169 1991 95 7 36 chr12 68800022 68800326 -75482163 + AluSq SINE Alu 1 295 -18 713 162 8 8 chr12 68800444 68800561 -75481928 - AluJb SINE Alu -195 117 1 1665 138 8 0 chr12 68800678 68800939 -75481550 - AluSx SINE Alu -29 283 21 1701 150 7 4 chr12 68801159 68801439 -75481050 + AluJb SINE Alu 29 309 -3 2657 133 51 16 chr12 68801439 68801929 -75480560 + L1MA10 LINE L1 5828 6334 0 24 0 0 0 chr12 68802776 68802800 -75479689 + AT_rich Low_complexity Low_complexity 1 24 0 399 268 91 52 chr12 68802999 68803308 -75479181 + L1ME3A LINE L1 5578 5919 -251 2500 40 0 0 chr12 68803476 68803774 -75478715 - AluY SINE Alu -13 298 1 2174 101 0 0 chr12 68803943 68804239 -75478250 + AluSc SINE Alu 1 296 -13 828 183 28 6 chr12 68804344 68804524 -75477965 + AluSq SINE Alu 2 185 -128 2271 76 3 10 chr12 68805173 68805474 -75477015 - AluY SINE Alu -12 299 1 2178 94 3 3 chr12 68805476 68805773 -75476716 - AluSp SINE Alu -16 297 1 215 234 16 0 chr12 68805953 68806017 -75476472 - L2 LINE L2 -214 3058 2994 269 57 0 0 chr12 68806137 68806172 -75476317 - MADE1 DNA Mariner -44 36 2 1491 106 138 0 chr12 68806265 68806511 -75475978 + AluSx SINE Alu 1 280 -32 270 174 29 72 chr12 68806570 68806639 -75475850 + MIR SINE MIR 124 189 -73 2272 69 0 10 chr12 68806851 68807163 -75475326 + AluSq SINE Alu 1 309 0 395 208 58 117 chr12 68808475 68808629 -75473860 - LTR45B LTR ERV1 -15 474 330 686 139 177 70 chr12 68808645 68808803 -75473686 + FRAM SINE Alu 1 167 -9 1568 157 32 18 chr12 68808807 68809088 -75473401 + AluJb SINE Alu 1 285 -27 2285 80 3 13 chr12 68809431 68809744 -75472745 - AluSq SINE Alu -3 310 1 312 332 117 22 chr12 68809924 68810147 -75472342 - MIR SINE MIR -18 244 1 2176 88 40 0 chr12 68810651 68810948 -75471541 + AluSg SINE Alu 1 309 -1 1670 175 0 10 chr12 68811212 68811509 -75470980 + AluJo SINE Alu 11 304 -8 329 298 119 81 chr12 68811698 68812488 -75470001 - L2 LINE L2 -815 2499 1741 446 0 0 18 chr12 68812488 68812543 -75469946 + (TATG)n Simple_repeat Simple_repeat 4 57 0 1989 98 7 18 chr12 68812543 68812829 -75469660 - AluSx SINE Alu -29 283 1 329 298 119 81 chr12 68812829 68812974 -75469515 - L2 LINE L2 -1572 1742 1527 2364 162 36 7 chr12 68814207 68814621 -75467868 + MSTB LTR MaLR 1 426 0 1029 109 49 6 chr12 68814621 68814804 -75467685 + MSTB-int LTR MaLR 1 191 -1460 1554 180 17 0 chr12 68814804 68815098 -75467391 + AluJb SINE Alu 1 299 -13 1036 189 0 0 chr12 68815098 68815267 -75467222 - HSMAR2 DNA Mariner -801 501 333 719 155 69 0 chr12 68815297 68815413 -75467076 - FLAM_C SINE Alu -18 125 2 1041 87 34 0 chr12 68815414 68815563 -75466926 - HSMAR2 DNA Mariner -964 338 185 978 168 0 0 chr12 68815563 68815736 -75466753 + AluSg/x SINE Alu 133 305 -5 1180 77 6 0 chr12 68815736 68815892 -75466597 - HSMAR2 DNA Mariner -1106 196 40 1655 168 45 0 chr12 68815898 68816189 -75466300 - AluJb SINE Alu 0 312 9 1017 257 145 15 chr12 68816236 68816637 -75465852 - L1MC4a LINE L1 -1895 5913 5461 1410 171 99 0 chr12 68816638 68816801 -75465688 - AluJo SINE Alu -17 295 95 221 0 0 33 chr12 68816801 68816831 -75465658 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1410 171 99 0 chr12 68816831 68816930 -75465559 - AluJo SINE Alu -217 95 7 323 160 80 60 chr12 68817063 68817163 -75465326 - L1ME1 LINE L1 -11 6155 6054 1754 148 4 7 chr12 68817225 68817503 -75464986 - AluSx SINE Alu -21 291 15 1877 102 0 0 chr12 68817776 68818032 -75464457 + AluSx SINE Alu 50 305 -7 1924 150 0 3 chr12 68818047 68818340 -75464149 + AluJo SINE Alu 1 292 -20 25 31 0 0 chr12 68818466 68818498 -75463991 + AT_rich Low_complexity Low_complexity 1 32 0 720 191 25 32 chr12 68818601 68818758 -75463731 + MER34C LTR ERV1 40 195 -390 623 179 0 68 chr12 68818791 68818908 -75463581 - FLAM_A SINE Alu -33 109 1 321 220 34 0 chr12 68818909 68818968 -75463521 + MER34C LTR ERV1 188 248 -337 293 107 0 18 chr12 68818969 68819025 -75463464 + (CA)n Simple_repeat Simple_repeat 2 56 0 2175 98 7 0 chr12 68819061 68819367 -75463122 - AluSx SINE Alu -4 308 1 364 208 136 52 chr12 68819512 68819666 -75462823 + MER34 LTR ERV1 376 542 0 4121 122 35 5 chr12 68819732 68820363 -75462126 + MER39B LTR ERV1 1 650 -3 712 127 36 0 chr12 68820363 68820473 -75462016 - MSTB1 LTR MaLR -1 431 318 1834 85 4 0 chr12 68820738 68820974 -75461515 - AluSp SINE Alu -23 290 54 643 133 0 0 chr12 68820974 68821064 -75461425 - AluS SINE Alu -222 91 2 2012 143 0 0 chr12 68821121 68821429 -75461060 - AluSg SINE Alu -2 308 1 2102 118 0 6 chr12 68821443 68821757 -75460732 - AluSx SINE Alu 0 312 1 2069 116 3 7 chr12 68821916 68822217 -75460272 - AluSx SINE Alu -12 300 1 1610 40 0 10 chr12 68822736 68822934 -75459555 - L1PA5 LINE L1 -1 6153 5958 233 234 0 96 chr12 68823694 68823748 -75458741 + MIR SINE MIR 168 211 -51 2456 43 0 7 chr12 68823748 68824053 -75458436 + AluY SINE Alu 1 303 -8 233 234 0 96 chr12 68824053 68824092 -75458397 + MIR SINE MIR 211 252 -10 486 173 79 31 chr12 68824176 68824303 -75458186 + AluJb SINE Alu 1 133 -179 1525 190 3 22 chr12 68825009 68825325 -75457164 + AluJo SINE Alu 1 310 -2 1496 150 35 0 chr12 68825563 68825823 -75456666 + AluJb SINE Alu 21 289 -23 2298 74 7 0 chr12 68825839 68826137 -75456352 + AluY SINE Alu 1 300 -11 953 170 177 90 chr12 68826158 68826302 -75456187 + AluJo SINE Alu 1 131 -171 2283 88 3 10 chr12 68826302 68826610 -75455879 + AluSc SINE Alu 1 306 -3 953 170 177 90 chr12 68826610 68826742 -75455747 + AluJo SINE Alu 131 301 -1 2199 104 3 0 chr12 68826823 68827121 -75455368 + AluSg SINE Alu 1 299 -11 631 265 115 5 chr12 68827641 68827841 -75454648 - MIR SINE MIR -1 261 40 2145 94 0 0 chr12 68827842 68828128 -75454361 - AluSc SINE Alu -2 307 22 1856 163 0 0 chr12 68828128 68828429 -75454060 - AluJb SINE Alu -11 301 1 2114 105 0 16 chr12 68828641 68828946 -75453543 - AluSx SINE Alu -12 300 1 2364 162 36 7 chr12 68830324 68830738 -75451751 + MSTB LTR MaLR 1 426 0 1150 112 27 5 chr12 68830738 68830925 -75451564 + MSTB-int LTR MaLR 1 191 -1460 1554 180 17 0 chr12 68830925 68831219 -75451270 + AluJb SINE Alu 1 299 -13 1036 189 0 0 chr12 68831219 68831388 -75451101 - HSMAR2 DNA Mariner -801 501 333 719 155 69 0 chr12 68831418 68831534 -75450955 - FLAM_C SINE Alu -18 125 2 1027 94 34 0 chr12 68831535 68831684 -75450805 - HSMAR2 DNA Mariner -964 338 185 998 174 0 0 chr12 68831684 68831862 -75450627 + AluSg/x SINE Alu 135 312 0 1320 65 5 89 chr12 68831862 68832025 -75450464 - HSMAR2 DNA Mariner -1106 196 54 1586 200 40 0 chr12 68832025 68832325 -75450164 - AluJb SINE Alu 0 312 1 1320 65 5 89 chr12 68832325 68832375 -75450114 - HSMAR2 DNA Mariner -1248 54 1 190 343 76 9 chr12 68832400 68832505 -75449984 - L2 LINE L2 -14 3258 3147 354 280 260 0 chr12 68832616 68832766 -75449723 - MIR SINE MIR -56 206 18 1639 174 10 0 chr12 68833192 68833485 -75449004 - AluSx SINE Alu -16 296 1 523 93 13 0 chr12 68833656 68833731 -75448758 + Alu SINE Alu 1 76 -234 968 118 0 0 chr12 68833882 68834018 -75448471 - AluSg/x SINE Alu -11 301 166 1750 134 3 11 chr12 68834034 68834362 -75448127 + AluSx SINE Alu 1 326 0 214 333 0 43 chr12 68834649 68834742 -75447747 - MER5A DNA MER1_type -38 151 63 1419 194 61 7 chr12 68834751 68835029 -75447460 + AluJo SINE Alu 2 294 -8 2114 103 7 3 chr12 68835297 68835599 -75446890 + AluSq SINE Alu 1 303 -10 1528 199 23 3 chr12 68836961 68837267 -75445222 + AluJo SINE Alu 1 312 0 198 0 0 0 chr12 68838598 68838620 -75443869 + (A)n Simple_repeat Simple_repeat 1 22 0 444 182 7 7 chr12 68839532 68839683 -75442806 + GA-rich Low_complexity Low_complexity 1 151 0 284 317 32 21 chr12 68841079 68841265 -75441224 + L2 LINE L2 1812 1999 -1315 416 269 69 61 chr12 68841335 68841714 -75440775 + L2 LINE L2 2544 3058 -214 1731 151 0 53 chr12 68841949 68842267 -75440222 + AluJb SINE Alu 1 301 -11 180 0 0 0 chr12 68842517 68842537 -75439952 + (A)n Simple_repeat Simple_repeat 1 20 0 903 110 0 48 chr12 68842805 68842951 -75439538 + AluJo SINE Alu 1 139 -173 254 309 100 34 chr12 68843216 68843382 -75439107 - MIR3 SINE MIR -36 172 31 313 262 56 0 chr12 68843939 68844046 -75438443 + CT-rich Low_complexity Low_complexity 1 113 0 2143 106 0 28 chr12 68844551 68844873 -75437616 + AluSq SINE Alu 1 313 0 1543 163 14 41 chr12 68844929 68845224 -75437265 + AluJo SINE Alu 1 287 -25 2110 116 0 19 chr12 68845228 68845546 -75436943 + AluSx SINE Alu 1 312 0 2487 48 0 10 chr12 68845624 68845937 -75436552 + AluY SINE Alu 1 310 -1 199 261 92 15 chr12 68846258 68846323 -75436166 + L2 LINE L2 3156 3225 -47 306 0 0 0 chr12 68846482 68846516 -75435973 + (CA)n Simple_repeat Simple_repeat 2 35 0 800 119 0 0 chr12 68848155 68848273 -75434216 + AluSg/x SINE Alu 191 308 -1 1894 94 16 52 chr12 68848435 68848743 -75433746 + AluSx SINE Alu 1 297 -15 1475 139 0 0 chr12 68848897 68849120 -75433369 - AluJb SINE Alu -17 295 73 2233 54 7 0 chr12 68849120 68849396 -75433093 - AluY SINE Alu -22 289 10 599 136 0 0 chr12 68849396 68849477 -75433012 - AluS SINE Alu -230 82 2 1805 140 4 0 chr12 68850213 68850492 -75431997 + AluJb SINE Alu 22 301 -11 2055 99 3 3 chr12 68851004 68851322 -75431167 + AluSp SINE Alu 1 318 0 1582 181 13 3 chr12 68851351 68851649 -75430840 + AluJb SINE Alu 1 301 -11 219 36 0 0 chr12 68851697 68851725 -75430764 + (CA)n Simple_repeat Simple_repeat 2 29 0 * 279 161 0 0 chr12 68851720 68851776 -75430713 + CT-rich Low_complexity Low_complexity 2 57 0 185 250 58 0 chr12 68852439 68852491 -75429998 - MIR SINE MIR -59 203 149 393 257 67 67 chr12 68852579 68852758 -75429731 - MIR SINE MIR -45 217 39 2383 33 13 29 chr12 68853147 68853454 -75429035 - AluY SINE Alu -9 302 1 1539 192 29 0 chr12 68853717 68853998 -75428491 - AluJo SINE Alu -17 295 7 379 276 100 41 chr12 68854216 68854386 -75428103 + MIR3 SINE MIR 3 182 -26 2288 88 7 0 chr12 68854823 68855128 -75427361 + AluSx SINE Alu 1 307 -5 345 262 39 10 chr12 68855230 68855333 -75427156 - L2 LINE L2 -6 3266 3161 280 210 25 12 chr12 68856237 68856318 -75426171 + L1MC4 LINE L1 7961 8042 0 1966 106 15 0 chr12 68856376 68856650 -75425839 + AluSg SINE Alu 1 278 -32 604 201 55 49 chr12 68856744 68856908 -75425581 + MIR SINE MIR 28 192 -70 324 241 139 19 chr12 68856909 68857017 -75425472 - L2 LINE L2 -3 3269 3149 823 151 7 0 chr12 68858162 68858301 -75424188 + FLAM_C SINE Alu 3 142 -1 465 265 121 0 chr12 68858419 68858551 -75423938 + MER3 DNA MER1_type 1 148 -61 1896 136 3 0 chr12 68858667 68858962 -75423527 + AluJo SINE Alu 1 296 -16 2041 126 10 0 chr12 68858964 68859265 -75423224 + AluSx SINE Alu 1 304 -8 2025 80 53 40 chr12 68859265 68859566 -75422923 + AluSq SINE Alu 1 306 -7 375 203 0 0 chr12 68860213 68860282 -75422207 - MER103 DNA DNA -45 121 53 959 113 0 0 chr12 68860283 68860416 -75422073 + AluJb SINE Alu 1 133 -179 867 186 0 6 chr12 68861140 68861307 -75421182 - AluSg/x SINE Alu -18 294 129 1402 178 52 28 chr12 68862917 68863203 -75419286 + AluJo SINE Alu 1 293 -9 2156 122 0 0 chr12 68863208 68863519 -75418970 + AluSx SINE Alu 1 311 -1 888 72 158 0 chr12 68863520 68863672 -75418817 + L1MA3 LINE L1 6130 6305 0 486 295 62 16 chr12 68864678 68864871 -75417618 - MIR SINE MIR -36 226 25 180 0 0 0 chr12 68865819 68865839 -75416650 + (T)n Simple_repeat Simple_repeat 1 20 0 2254 62 42 0 chr12 68866761 68867050 -75415439 + AluY SINE Alu 1 301 -10 1487 187 23 19 chr12 68867158 68867468 -75415021 + AluJb SINE Alu 1 311 -1 210 346 59 22 chr12 68867535 68867671 -75414818 - MIR SINE MIR -11 251 111 199 325 65 0 chr12 68867767 68867844 -75414645 + MIR SINE MIR 68 149 -59 1065 137 6 6 chr12 68868245 68868420 -75414069 + AluSg/x SINE Alu 128 302 -8 353 245 53 21 chr12 68868897 68868991 -75413498 - L2 LINE L2 -7 3306 3210 232 310 86 9 chr12 68869699 68869815 -75412674 + MIR SINE MIR 103 227 -35 2150 178 110 7 chr12 68869849 68870259 -75412230 - MER66A LTR ERV1 0 478 27 192 310 127 40 chr12 68870432 68870623 -75411866 - MIR3 SINE MIR -41 221 5 441 116 0 14 chr12 68871237 68871306 -75411183 + AluS SINE Alu 2 69 -249 198 0 0 0 chr12 68871881 68871903 -75410586 + (A)n Simple_repeat Simple_repeat 1 22 0 1965 104 58 0 chr12 68871938 68872216 -75410273 + AluSx SINE Alu 1 294 -18 264 148 204 0 chr12 68872749 68872803 -75409686 - MIR SINE MIR -2 260 196 635 152 0 0 chr12 68873148 68873247 -75409242 - AluJb SINE Alu -4 308 210 405 277 53 48 chr12 68873248 68873296 -75409193 + L2 LINE L2 3113 3159 -154 1877 156 0 3 chr12 68873296 68873604 -75408885 - AluJb SINE Alu -4 308 2 405 277 53 48 chr12 68873604 68873743 -75408746 + L2 LINE L2 3159 3301 -12 2031 133 7 0 chr12 68873760 68874068 -75408421 + AluSx SINE Alu 1 310 -2 550 174 0 41 chr12 68874075 68874173 -75408316 - FLAM_A SINE Alu -26 116 23 1555 142 90 0 chr12 68874248 68874515 -75407974 - AluJo SINE Alu -21 291 1 203 299 222 8 chr12 68874556 68874673 -75407816 - MIR SINE MIR -101 161 20 688 140 0 0 chr12 68875526 68875626 -75406863 + AluJb SINE Alu 5 104 -208 228 195 0 0 chr12 68875632 68875673 -75406816 + L1MC4 LINE L1 6662 6702 -1340 * 239 125 42 0 chr12 68875643 68875691 -75406798 - L1MC4 LINE L1 -1340 6702 6653 555 162 0 0 chr12 68875691 68875790 -75406699 + (CA)n Simple_repeat Simple_repeat 1 99 0 2050 114 0 0 chr12 68875795 68876075 -75406414 - AluSx SINE Alu -31 281 2 1746 126 4 19 chr12 68876684 68876954 -75405535 - AluJo SINE Alu -45 267 2 1448 169 4 0 chr12 68876988 68877219 -75405270 - AluSx SINE Alu -77 235 4 1356 137 119 47 chr12 68877675 68877952 -75404537 - AluJb SINE Alu -15 297 1 774 172 25 0 chr12 68878281 68878438 -75404051 - L1MB3 LINE L1 0 6183 6023 1717 141 23 36 chr12 68878438 68878742 -75403747 + AluSx SINE Alu 2 301 -11 1319 181 76 11 chr12 68879049 68879326 -75403163 + AluJb SINE Alu 1 295 -17 1724 178 22 95 chr12 68879341 68879511 -75402978 + MLT1B LTR MaLR 11 192 -198 1539 173 0 49 chr12 68879511 68879817 -75402672 + AluJb SINE Alu 1 291 -21 1724 178 22 95 chr12 68879817 68880056 -75402433 + MLT1B LTR MaLR 192 390 0 360 145 145 0 chr12 68880381 68880450 -75402039 + FLAM_A SINE Alu 20 98 -35 1696 161 17 3 chr12 68880934 68881233 -75401256 + AluJb SINE Alu 1 303 -9 2023 123 0 3 chr12 68881235 68881535 -75400954 + AluSx SINE Alu 1 299 -13 2199 106 0 6 chr12 68882180 68882492 -75399997 + AluSg SINE Alu 1 310 0 202 208 182 26 chr12 68882630 68882707 -75399782 + L3 LINE CR1 660 748 -829 419 339 148 20 chr12 68882844 68883189 -75399300 + L3 LINE CR1 1074 1462 -115 199 210 76 101 chr12 68883363 68883403 -75399086 + MER5B DNA MER1_type 21 60 -118 2397 67 0 0 chr12 68883403 68883703 -75398786 + AluY SINE Alu 1 300 -11 199 210 76 101 chr12 68883703 68883781 -75398708 + MER5B DNA MER1_type 60 136 -42 1535 169 3 14 chr12 68883808 68884092 -75398397 + AluJo SINE Alu 23 303 -9 1790 100 0 0 chr12 68884114 68884353 -75398136 + AluSc SINE Alu 1 239 -70 1528 162 46 25 chr12 68885045 68885184 -75397305 + AluJb SINE Alu 1 136 -179 2202 97 0 7 chr12 68885184 68885492 -75396997 + AluSg SINE Alu 1 306 -4 1528 162 46 25 chr12 68885492 68885661 -75396828 + AluJb SINE Alu 136 315 0 826 291 4 25 chr12 68885831 68886068 -75396421 + MIR SINE MIR 31 262 0 2329 211 92 43 chr12 68886483 68887157 -75395332 + L1ME3 LINE L1 5455 6161 -1 40 21 0 0 chr12 68887337 68887384 -75395105 + AT_rich Low_complexity Low_complexity 1 47 0 596 119 0 0 chr12 68887386 68887470 -75395019 - FLAM_C SINE Alu -25 118 35 257 234 93 19 chr12 68887540 68887647 -75394842 + MIR SINE MIR 104 218 -44 899 130 84 32 chr12 68887850 68888004 -75394485 - AluJb SINE Alu -46 266 105 1905 157 13 3 chr12 68888174 68888479 -75394010 - AluJb SINE Alu -2 310 3 907 182 11 23 chr12 68889330 68889506 -75392983 - FAM SINE Alu -1 174 1 276 198 31 52 chr12 68889583 68889679 -75392810 - MIR SINE MIR 0 262 169 1842 109 41 37 chr12 68889729 68890023 -75392466 + AluSq SINE Alu 1 295 -18 915 94 0 0 chr12 68890143 68890260 -75392229 - AluSq/x SINE Alu -196 117 1 253 315 11 11 chr12 68890263 68890355 -75392134 - L1ME LINE L1 -418 5703 5612 2398 75 7 0 chr12 68890496 68890789 -75391700 + AluSp SINE Alu 1 295 -18 832 111 8 8 chr12 68890905 68891022 -75391467 - AluJb SINE Alu -195 117 1 209 215 37 47 chr12 68891189 68891296 -75391193 + CT-rich Low_complexity Low_complexity 1 106 0 1659 161 7 25 chr12 68891586 68891871 -75390618 + AluJb SINE Alu 6 285 -27 436 223 147 43 chr12 68891893 68892077 -75390412 + L1ME2 LINE L1 5952 6154 -10 186 293 0 0 chr12 68892238 68892320 -75390169 + (TA)n Simple_repeat Simple_repeat 1 82 0 616 288 88 33 chr12 68892342 68892582 -75389907 + MIR SINE MIR 2 254 -8 2328 89 21 0 chr12 68892633 68892924 -75389565 - AluSg SINE Alu -13 297 1 2066 110 11 11 chr12 68892963 68893285 -75389204 - AluSx SINE Alu 0 322 1 2473 66 10 0 chr12 68893607 68893908 -75388581 + AluSp SINE Alu 1 304 -9 657 296 175 15 chr12 68893915 68894371 -75388118 - MLT1L LTR MaLR -68 547 19 430 282 13 39 chr12 68894421 68894577 -75387912 - MIR SINE MIR -43 219 68 1957 102 0 0 chr12 68894577 68894831 -75387658 + AluSx SINE Alu 46 299 -13 1977 133 20 17 chr12 68894996 68895290 -75387199 + AluJb SINE Alu 1 295 -17 243 0 0 0 chr12 68895357 68895384 -75387105 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1965 128 0 17 chr12 68895386 68895674 -75386815 - AluSx SINE Alu -29 283 1 1760 158 6 51 chr12 68895752 68896068 -75386421 - AluJo SINE Alu -10 302 1 495 176 12 0 chr12 68896093 68896178 -75386311 - FLAM_A SINE Alu -17 125 40 1827 104 86 4 chr12 68896319 68896597 -75385892 - AluSq SINE Alu -12 301 1 231 226 11 65 chr12 68897286 68897379 -75385110 + MIR SINE MIR 110 197 -65 272 222 7 56 chr12 68898343 68898487 -75384002 + (CGGGG)n Simple_repeat Simple_repeat 2 138 0 25 90 0 0 chr12 68898551 68898618 -75383871 + GC_rich Low_complexity Low_complexity 1 67 0 2205 114 17 0 chr12 68900475 68900774 -75381715 - AluSx SINE Alu -7 305 2 2171 119 0 7 chr12 68901663 68901957 -75380532 + AluJb SINE Alu 1 292 -20 313 262 36 0 chr12 68902010 68902094 -75380395 + L2 LINE L2 3186 3272 0 2419 77 20 0 chr12 68902129 68902427 -75380062 - AluSq SINE Alu -9 304 1 1969 157 0 3 chr12 68902685 68902998 -75379491 - AluSx SINE Alu 0 312 1 2284 96 7 3 chr12 68903672 68903973 -75378516 - AluSq SINE Alu -11 302 1 387 202 75 0 chr12 68905307 68905401 -75377088 - L2 LINE L2 -4 3268 3168 2154 109 0 3 chr12 68905572 68905855 -75376634 - AluSg SINE Alu -28 282 1 886 192 0 0 chr12 68906092 68906243 -75376246 - FAM SINE Alu 0 49 1 2355 83 3 7 chr12 68906325 68906625 -75375864 - AluSg SINE Alu -11 299 1 198 0 0 0 chr12 68906625 68906647 -75375842 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 965 125 128 116 chr12 68906784 68907104 -75375385 + MER33 DNA MER1_type 1 324 0 2332 107 0 0 chr12 68907699 68907998 -75374491 + AluSg SINE Alu 2 300 -10 207 0 0 0 chr12 68908013 68908036 -75374453 + (TG)n Simple_repeat Simple_repeat 2 24 0 232 271 146 31 chr12 68908046 68908142 -75374347 - L2 LINE L2 -4 3309 3203 1916 164 27 14 chr12 68908158 68908525 -75373964 - L1MB2 LINE L1 -224 5947 5576 269 295 49 16 chr12 68908626 68908809 -75373680 - L1ME LINE L1 -359 5762 5574 2307 93 7 10 chr12 68908932 68909233 -75373256 - AluSq SINE Alu -12 301 2 234 143 0 61 chr12 68909281 68909330 -75373159 - L1P LINE L1 -786 5365 5320 1981 116 35 14 chr12 68909486 68909770 -75372719 - AluSp SINE Alu -23 290 1 1976 116 16 36 chr12 68910055 68910358 -75372131 - AluSg SINE Alu -13 297 1 639 75 0 0 chr12 68910519 68910599 -75371890 + MADE1 DNA Mariner 1 80 0 2370 110 0 0 chr12 68910810 68911119 -75371370 - AluSx SINE Alu -3 309 1 2018 142 0 19 chr12 68911637 68911947 -75370542 - AluSx SINE Alu -8 304 1 191 256 0 0 chr12 68912383 68912422 -75370067 + MIR SINE MIR 78 116 -92 853 141 0 22 chr12 68912437 68912572 -75369917 - FLAM_C SINE Alu 0 133 2 250 151 0 23 chr12 68912572 68912625 -75369864 + MIR SINE MIR 98 147 -115 1872 95 7 44 chr12 68912670 68912966 -75369523 - AluY SINE Alu -24 287 3 22 0 0 0 chr12 68913266 68913288 -75369201 + AT_rich Low_complexity Low_complexity 1 22 0 1003 237 4 13 chr12 68913348 68913584 -75368905 - AluJo SINE Alu -78 234 1 207 114 0 0 chr12 68914264 68914299 -75368190 + (TG)n Simple_repeat Simple_repeat 2 36 0 517 207 45 0 chr12 68914302 68914413 -75368076 - AluJb SINE Alu -196 116 1 208 151 81 151 chr12 68914495 68914531 -75367958 - MIR SINE MIR -10 252 215 2614 42 0 7 chr12 68914531 68914839 -75367650 - AluY SINE Alu -5 306 1 208 151 81 151 chr12 68914839 68914888 -75367601 - MIR SINE MIR -47 215 173 1610 40 0 10 chr12 68915654 68915852 -75366637 + L1PA5 LINE L1 5958 6153 -1 2196 116 3 7 chr12 68916371 68916672 -75365817 + AluSx SINE Alu 1 300 -12 2231 118 0 6 chr12 68916831 68917145 -75365344 + AluSx SINE Alu 1 312 0 2126 136 0 7 chr12 68917159 68917467 -75365022 + AluSg SINE Alu 1 306 -4 635 133 0 0 chr12 68917524 68917614 -75364875 + AluS SINE Alu 2 91 -222 1939 85 4 0 chr12 68917614 68917850 -75364639 + AluSp SINE Alu 54 290 -23 715 127 36 0 chr12 68918115 68918225 -75364264 + MSTB1 LTR MaLR 318 431 -1 4394 111 30 2 chr12 68918225 68918857 -75363632 - MER39B LTR ERV1 -3 650 1 367 208 136 52 chr12 68918923 68919077 -75363412 - MER34 LTR ERV1 0 542 376 2325 99 7 0 chr12 68919222 68919525 -75362964 + AluSx SINE Alu 1 305 -7 293 107 0 18 chr12 68919561 68919617 -75362872 + (TG)n Simple_repeat Simple_repeat 2 56 0 323 220 34 0 chr12 68919618 68919677 -75362812 - MER34C LTR ERV1 -337 248 188 618 179 0 68 chr12 68919678 68919795 -75362694 + FLAM_A SINE Alu 1 109 -33 727 191 25 32 chr12 68919828 68919985 -75362504 - MER34C LTR ERV1 -390 195 40 25 31 0 0 chr12 68920088 68920120 -75362369 + AT_rich Low_complexity Low_complexity 1 32 0 2059 147 0 3 chr12 68920246 68920539 -75361950 - AluJo SINE Alu -20 292 1 1991 101 0 0 chr12 68920554 68920811 -75361678 - AluSx SINE Alu -6 306 50 1875 152 14 7 chr12 68921072 68921361 -75361128 + AluSx SINE Alu 1 291 -21 328 160 80 60 chr12 68921423 68921523 -75360966 + L1ME1 LINE L1 6054 6155 -11 1517 171 99 0 chr12 68921656 68921755 -75360734 + AluJo SINE Alu 7 95 -217 221 0 0 33 chr12 68921755 68921785 -75360704 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1517 171 99 0 chr12 68921785 68921948 -75360541 + AluJo SINE Alu 95 295 -17 977 262 198 33 chr12 68921949 68922397 -75360092 + L1MC4a LINE L1 5461 5834 -1974 1957 150 3 0 chr12 68922397 68922683 -75359806 + AluJb SINE Alu 9 295 -17 977 262 198 33 chr12 68922683 68922895 -75359594 + L1MC4a LINE L1 5834 6230 -1578 308 265 166 13 chr12 68922943 68923094 -75359395 + L1MC5 LINE L1 7716 7889 -72 2226 92 0 7 chr12 68923103 68923395 -75359094 - AluSg SINE Alu -20 290 1 220 296 14 0 chr12 68923744 68923815 -75358674 - MIR SINE MIR -107 155 84 1412 182 19 58 chr12 68924345 68924568 -75357921 - AluJb SINE Alu -16 296 87 2268 119 3 0 chr12 68924568 68924870 -75357619 - AluSx SINE Alu -9 303 1 1412 182 19 58 chr12 68924870 68924954 -75357535 - AluJb SINE Alu -225 87 1 2322 115 0 0 chr12 68925119 68925423 -75357066 - AluSx SINE Alu -8 304 1 300 233 165 0 chr12 68925783 68925916 -75356573 + L1ME4a LINE L1 5836 5990 -131 30 45 0 0 chr12 68925990 68926034 -75356455 + AT_rich Low_complexity Low_complexity 1 44 0 590 168 88 32 chr12 68926059 68926184 -75356305 - FLAM_C SINE Alu 0 133 2 718 145 34 0 chr12 68926381 68926498 -75355991 + AluJb SINE Alu 171 291 -21 1199 85 0 20 chr12 68927231 68927384 -75355105 + AluSq/x SINE Alu 1 150 -162 1971 108 0 75 chr12 68927389 68927695 -75354794 + AluSx SINE Alu 4 286 -26 333 0 0 0 chr12 68927702 68927739 -75354750 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1574 150 117 0 chr12 68927744 68928017 -75354472 + AluSx SINE Alu 1 305 -7 426 264 43 63 chr12 68928169 68928377 -75354112 + MER20B DNA MER1_type 1 214 -5 1306 211 52 107 chr12 68928536 68929020 -75353469 + LTR16B LTR ERVL 5 461 -3 1628 316 49 33 chr12 68929355 68930150 -75352339 + ERVL LTR ERVL 362 1169 -3827 2442 72 23 0 chr12 68930158 68930282 -75352207 + AluY SINE Alu 1 121 -190 273 29 0 0 chr12 68930282 68930316 -75352173 + (CAA)n Simple_repeat Simple_repeat 3 36 0 2442 72 23 0 chr12 68930316 68930495 -75351994 + AluY SINE Alu 121 311 0 1343 288 40 8 chr12 68930510 68931138 -75351351 + ERVL LTR ERVL 1231 1976 -3020 419 266 37 0 chr12 68931163 68931272 -75351217 + ERVL LTR ERVL 3354 3466 -2298 883 357 29 9 chr12 68931275 68931726 -75350763 + ERVL LTR ERVL 3927 4386 -1268 1712 320 59 54 chr12 68931862 68932312 -75350177 - MERVL LTR ERVL -1916 3569 3123 5146 190 92 81 chr12 68932312 68932436 -75350053 + MER45R DNA AcHobo 1 122 -1459 2118 96 10 42 chr12 68932436 68932748 -75349741 + AluSc SINE Alu 1 302 -7 5146 190 92 81 chr12 68932748 68933628 -75348861 + MER45R DNA AcHobo 122 991 -590 2203 101 0 42 chr12 68933628 68933762 -75348727 + AluSg SINE Alu 1 139 -171 2296 82 0 33 chr12 68933762 68934065 -75348424 + AluSg1 SINE Alu 1 293 -16 2203 101 0 42 chr12 68934065 68934236 -75348253 + AluSg SINE Alu 139 293 -17 5146 190 92 81 chr12 68934236 68934281 -75348208 + MER45R DNA AcHobo 991 1034 -547 1800 179 0 3 chr12 68934281 68934572 -75347917 - AluJb SINE Alu -22 290 1 5146 190 92 81 chr12 68934572 68934809 -75347680 + MER45R DNA AcHobo 1034 1267 -314 1403 209 3 17 chr12 68934809 68935101 -75347388 + AluJo SINE Alu 1 288 -24 5146 190 92 81 chr12 68935101 68935375 -75347114 + MER45R DNA AcHobo 1267 1581 0 1712 320 59 54 chr12 68935375 68936138 -75346351 - MERVL LTR ERVL -2362 3123 2350 3768 193 29 10 chr12 68936161 68937046 -75345443 - L1MEc LINE L1 -2909 3306 2405 1595 288 87 35 chr12 68937031 68937424 -75345065 - L1MEc LINE L1 -4948 1448 1077 * 1884 135 0 51 chr12 68937424 68937735 -75344754 - AluJb SINE Alu -17 295 1 1595 288 87 35 chr12 68937735 68937928 -75344561 - L1MEc LINE L1 -5319 1077 896 2367 65 19 13 chr12 68937928 68938237 -75344252 - AluY SINE Alu 0 311 1 1595 288 87 35 chr12 68938237 68939024 -75343465 - L1MEc LINE L1 -5500 896 16 2223 94 3 66 chr12 68939514 68939833 -75342656 + AluSx SINE Alu 1 299 -13 2221 192 199 33 chr12 68939834 68939968 -75342521 + MER69 DNA AcHobo 1614 1724 -802 656 93 21 0 chr12 68939968 68940065 -75342424 + L1MA9 LINE L1 6212 6310 -2 2221 192 199 33 chr12 68940065 68940203 -75342286 + MER69 DNA AcHobo 1724 1838 -688 1942 103 77 0 chr12 68940203 68940475 -75342014 + AluSx SINE Alu 16 308 -4 2221 192 199 33 chr12 68940475 68940984 -75341505 + MER69 DNA AcHobo 1838 2526 0 533 281 173 33 chr12 68941003 68941534 -75340955 + L2 LINE L2 2627 3245 -68 4181 94 3 23 chr12 68941538 68942103 -75340386 - MER41A LTR ERV1 0 554 1 390 146 48 68 chr12 68942470 68942573 -75339916 + U13 snRNA snRNA 1 101 -3 2040 74 63 3 chr12 68942868 68943152 -75339337 - AluSx SINE Alu -7 305 5 2513 58 0 6 chr12 68944821 68945132 -75337357 + AluSc SINE Alu 1 309 0 252 217 330 0 chr12 68945330 68945436 -75337053 - MIR3 SINE MIR -2 206 66 464 247 6 72 chr12 68945593 68945759 -75336730 - MER112 DNA MER1_type 0 260 106 1717 145 3 77 chr12 68946259 68946570 -75335919 - AluJb SINE Alu -24 288 1 289 332 117 22 chr12 68946750 68946973 -75335516 - MIR SINE MIR -18 244 1 2203 97 35 0 chr12 68947477 68947765 -75334724 + AluSg SINE Alu 1 298 -12 2184 102 0 0 chr12 68947850 68948133 -75334356 - AluSx SINE Alu -14 298 16 1963 159 0 3 chr12 68948536 68948837 -75333652 - AluJo SINE Alu -12 300 1 996 252 93 50 chr12 68948837 68949326 -75333163 + L2 LINE L2 2775 3297 -16 842 237 51 5 chr12 68951236 68951451 -75331038 + MIR SINE MIR 3 227 -35 258 105 0 0 chr12 68951454 68951492 -75330997 + (T)n Simple_repeat Simple_repeat 1 38 0 1848 110 0 4 chr12 68951493 68951739 -75330750 - AluSq SINE Alu -68 245 1 21 36 0 0 chr12 68952141 68952169 -75330320 + AT_rich Low_complexity Low_complexity 1 28 0 803 157 0 71 chr12 68952237 68952377 -75330112 - FLAM_C SINE Alu -12 131 2 1674 166 23 29 chr12 68952515 68952822 -75329667 - AluJo SINE Alu -7 305 1 1387 163 6 107 chr12 68952958 68953096 -75329393 + AluSx SINE Alu 10 98 -214 2180 108 0 3 chr12 68953096 68953383 -75329106 + AluSq SINE Alu 1 286 -27 1387 163 6 107 chr12 68953383 68953570 -75328919 + AluSx SINE Alu 98 302 -10 247 250 88 0 chr12 68953789 68953869 -75328620 + L1ME LINE L1 5315 5401 -2407 2549 66 0 0 chr12 68953891 68954194 -75328295 + AluY SINE Alu 1 303 -8 2552 66 0 0 chr12 68954204 68954508 -75327981 + AluY SINE Alu 1 304 -7 227 323 0 0 chr12 68954637 68954702 -75327787 + L1ME LINE L1 5532 5596 -525 406 145 0 16 chr12 68955320 68955382 -75327107 + AluY SINE Alu 219 279 -32 298 56 19 37 chr12 68955382 68955436 -75327053 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 867 137 7 50 chr12 68955993 68956132 -75326357 - FLAM_C SINE Alu 0 133 1 2285 119 0 0 chr12 68956264 68956566 -75325923 + AluSx SINE Alu 1 302 -10 682 157 128 12 chr12 68956812 68956984 -75325505 + L1MB8 LINE L1 5987 6178 0 1696 166 82 22 chr12 68957329 68957527 -75324962 + L1MB3 LINE L1 5807 5992 -191 1957 128 24 7 chr12 68957527 68957823 -75324666 - AluSx SINE Alu -10 302 2 1696 166 82 22 chr12 68957823 68957980 -75324509 + L1MB3 LINE L1 5992 6183 0 1452 137 119 47 chr12 68958309 68958586 -75323903 + AluJb SINE Alu 1 297 -15 1526 169 4 0 chr12 68959042 68959273 -75323216 + AluSx SINE Alu 4 235 -77 2008 136 3 7 chr12 68959307 68959609 -75322880 + AluJo SINE Alu 2 302 -10 2540 69 0 0 chr12 68959619 68959923 -75322566 + AluY SINE Alu 1 304 -7 226 323 0 0 chr12 68960052 68960114 -75322375 + L1ME LINE L1 5532 5593 -528 1590 177 7 30 chr12 68960349 68960654 -75321835 + AluJb SINE Alu 1 298 -14 1135 157 86 0 chr12 68962323 68962521 -75319968 - MER46A DNA MER2_type -6 230 16 1520 201 48 3 chr12 68962645 68962959 -75319530 - MER58B DNA MER1_type -13 328 1 191 229 0 0 chr12 68963016 68963051 -75319438 - MIR SINE MIR -17 245 211 2234 127 0 9 chr12 68963338 68963653 -75318836 + AluJo SINE Alu 1 312 0 658 287 32 0 chr12 68964715 68964903 -75317586 - L2 LINE L2 -280 3033 2840 277 288 194 38 chr12 68966320 68966480 -75316009 + MIR SINE MIR 54 238 -24 2348 75 7 0 chr12 68966538 68966893 -75315596 + AluY SINE Alu 1 357 0 460 218 143 8 chr12 68966933 68967066 -75315423 + MER103 DNA DNA 1 151 -15 1848 134 0 4 chr12 68967272 68967534 -75314955 + AluSx SINE Alu 1 261 -51 360 99 5 0 chr12 68967537 68967592 -75314897 - AluSg/x SINE Alu -46 254 208 1303 184 32 5 chr12 68968528 68968745 -75313744 - MER58A DNA MER1_type 0 224 2 195 114 0 0 chr12 68969083 68969118 -75313371 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 2042 129 4 0 chr12 68969874 68970153 -75312336 - AluSx SINE Alu -32 280 1 2218 119 0 0 chr12 68970377 68970672 -75311817 + AluSx SINE Alu 3 297 -15 434 248 55 7 chr12 68970746 68970891 -75311598 - L1MC5 LINE L1 -506 7455 7304 671 264 77 18 chr12 68971032 68971252 -75311237 - L1MC5 LINE L1 -720 7241 7009 278 293 5 99 chr12 68971950 68972141 -75310348 - MER5A DNA MER1_type 0 189 17 187 94 31 0 chr12 68972182 68972214 -75310275 + MER5A DNA MER1_type 43 75 -114 203 224 86 0 chr12 68972217 68972275 -75310214 - MER5A DNA MER1_type -118 71 9 1075 213 57 16 chr12 68973216 68973460 -75309029 - MIR SINE MIR -4 258 5 2236 98 3 29 chr12 68973549 68973864 -75308625 - AluY SINE Alu -4 307 1 488 316 45 0 chr12 68973906 68974083 -75308406 - L2 LINE L2 -243 3070 2886 340 296 54 71 chr12 68974082 68974322 -75308167 + L2 LINE L2 2874 3109 -163 * 210 306 56 0 chr12 68974429 68974501 -75307988 - MIR SINE MIR -100 108 33 1819 145 54 0 chr12 68975357 68975545 -75306944 - AluJb SINE Alu 0 312 101 194 0 39 0 chr12 68975545 68975571 -75306918 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1819 145 54 0 chr12 68975571 68975678 -75306811 - AluJb SINE Alu -211 101 1 2087 104 3 40 chr12 68975788 68975924 -75306565 + AluSq SINE Alu 3 142 -171 2438 62 0 3 chr12 68975924 68976215 -75306274 + AluY SINE Alu 1 290 -21 2467 80 0 3 chr12 68976217 68976529 -75305960 + AluY SINE Alu 1 311 0 2087 104 3 40 chr12 68976529 68976687 -75305802 + AluSq SINE Alu 143 289 -24 814 218 32 0 chr12 68976739 68976895 -75305594 - AluJb SINE Alu -15 297 137 1802 162 26 26 chr12 68977308 68977611 -75304878 + AluJb SINE Alu 1 303 -9 207 0 0 0 chr12 68978227 68978250 -75304239 + (T)n Simple_repeat Simple_repeat 1 23 0 246 281 234 0 chr12 68978405 68978533 -75303956 + MIR SINE MIR 63 220 -42 870 177 130 40 chr12 68978655 68978932 -75303557 + MER33 DNA MER1_type 23 324 0 302 304 44 30 chr12 68979285 68979420 -75303069 - MARNA DNA Mariner -354 232 96 23 33 0 0 chr12 68979800 68979830 -75302659 + AT_rich Low_complexity Low_complexity 1 30 0 315 327 125 40 chr12 68980021 68980293 -75302196 + L1ME LINE L1 5298 5592 -529 561 113 149 125 chr12 68980408 68980459 -75302030 - L1MB8 LINE L1 0 6178 6130 2205 100 7 7 chr12 68980459 68980758 -75301731 + AluSq SINE Alu 1 299 -14 561 113 149 125 chr12 68980758 68980874 -75301615 - L1MB8 LINE L1 -48 6130 6007 1353 186 64 4 chr12 68980951 68981231 -75301258 - L1MB8 LINE L1 -183 5995 5699 1290 180 0 28 chr12 68981234 68981484 -75301005 - AluJo SINE Alu -16 296 54 327 122 0 0 chr12 68981516 68981565 -75300924 - AluJo SINE Alu -241 61 13 878 227 103 47 chr12 68981565 68981889 -75300600 - L1MB8 LINE L1 -685 5499 5137 1665 153 0 4 chr12 68981889 68982143 -75300346 + AluJb SINE Alu 1 253 -59 878 227 103 47 chr12 68982143 68982372 -75300117 - L1MB8 LINE L1 -1047 5137 4922 338 255 39 0 chr12 68982512 68982614 -75299875 - L1MB8 LINE L1 -1492 4654 4549 2505 74 0 0 chr12 68982659 68982969 -75299520 - AluY SINE Alu 0 311 2 453 191 316 0 chr12 68983147 68983283 -75299206 - MER3 DNA MER1_type -23 186 8 1059 211 67 0 chr12 68983284 68983492 -75298997 + MER58A DNA MER1_type 2 223 -1 767 236 61 0 chr12 68983500 68983665 -75298824 - MER5B DNA MER1_type -3 175 1 2144 118 0 10 chr12 68983804 68984109 -75298380 - AluSx SINE Alu -10 302 1 585 203 235 7 chr12 68984315 68984468 -75298021 - MER5A DNA MER1_type 0 189 2 250 296 235 9 chr12 68984477 68984592 -75297897 - MER5A DNA MER1_type 0 189 49 242 307 21 90 chr12 68984580 68984769 -75297720 + L2 LINE L2 2584 2759 -555 * 671 264 77 18 chr12 68986516 68986736 -75295753 - L1MC5 LINE L1 -720 7241 7009 265 273 2 92 chr12 68987434 68987628 -75294861 - MER5A DNA MER1_type 0 178 1 187 94 31 0 chr12 68987667 68987699 -75294790 + MER5A DNA MER1_type 43 75 -114 203 224 86 0 chr12 68987702 68987760 -75294729 - MER5A DNA MER1_type -118 71 9 1075 213 57 16 chr12 68988701 68988945 -75293544 - MIR SINE MIR -4 258 5 2254 98 3 29 chr12 68989034 68989349 -75293140 - AluY SINE Alu -4 307 1 434 316 45 0 chr12 68989391 68989568 -75292921 - L2 LINE L2 -243 3070 2886 275 296 54 71 chr12 68989567 68989807 -75292682 + L2 LINE L2 2874 3109 -163 * 188 306 56 0 chr12 68989914 68989986 -75292503 - MIR SINE MIR -100 108 33 1857 142 54 0 chr12 68990842 68991030 -75291459 - AluJb SINE Alu 0 312 101 194 0 39 0 chr12 68991030 68991056 -75291433 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1857 142 54 0 chr12 68991056 68991163 -75291326 - AluJb SINE Alu -211 101 1 1075 96 0 15 chr12 68991273 68991409 -75291080 + AluSq/x SINE Alu 3 136 -176 1578 130 4 51 chr12 68991409 68991685 -75290804 + AluY SINE Alu 1 263 -48 1732 76 5 0 chr12 68992018 68992229 -75290260 - AluSp SINE Alu -6 307 96 1002 247 101 34 chr12 68992235 68992672 -75289817 + L1M4 LINE L1 4672 5137 -1009 1956 147 3 20 chr12 68992984 68993290 -75289199 + AluJb SINE Alu 1 301 -11 1039 190 0 0 chr12 68993290 68993469 -75289020 + AluJb SINE Alu 134 312 0 2185 114 3 3 chr12 68993595 68993893 -75288596 + AluSx SINE Alu 1 298 -14 252 340 9 19 chr12 68994526 68994632 -75287857 - MIR SINE MIR -74 134 30 272 281 35 53 chr12 68994799 68994913 -75287576 - L2 LINE L2 -6 3266 3155 280 336 21 64 chr12 68995319 68995459 -75287030 - MIR3 SINE MIR -45 163 30 1928 134 10 33 chr12 68995531 68995838 -75286651 + AluJo SINE Alu 5 304 -8 853 102 0 8 chr12 68995873 68995991 -75286498 - AluSx SINE Alu 0 310 194 1180 89 0 7 chr12 68995992 68996138 -75286351 - AluSx SINE Alu -166 146 2 250 253 0 27 chr12 68996141 68996216 -75286273 - MIR SINE MIR -3 259 187 180 0 0 0 chr12 68997156 68997176 -75285313 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2266 68 3 30 chr12 68997425 68997720 -75284769 + AluY SINE Alu 1 287 -24 250 151 0 23 chr12 68997765 68997818 -75284671 - MIR SINE MIR -115 147 98 853 141 0 22 chr12 68997818 68997953 -75284536 + FLAM_C SINE Alu 2 133 0 203 231 0 0 chr12 68997968 68998007 -75284482 - MIR SINE MIR -92 116 78 2032 139 0 19 chr12 68998443 68998753 -75283736 + AluSx SINE Alu 1 304 -8 2164 117 3 19 chr12 68999271 68999579 -75282910 + AluSx SINE Alu 1 303 -9 639 75 0 0 chr12 68999790 68999870 -75282619 - MADE1 DNA Mariner 0 80 1 1976 116 16 36 chr12 69000031 69000334 -75282155 + AluSg SINE Alu 1 297 -13 1934 117 39 14 chr12 69000619 69000902 -75281587 + AluSp SINE Alu 1 290 -23 234 143 0 61 chr12 69001058 69001107 -75281382 + L1P LINE L1 5320 5365 -786 2307 93 7 10 chr12 69001155 69001456 -75281033 + AluSq SINE Alu 2 301 -12 310 284 49 16 chr12 69001579 69001762 -75280727 + L1ME LINE L1 5574 5762 -359 1916 164 27 14 chr12 69001863 69002230 -75280259 + L1MB2 LINE L1 5576 5947 -224 232 271 146 31 chr12 69002246 69002342 -75280147 + L2 LINE L2 3203 3309 -4 207 0 0 0 chr12 69002352 69002375 -75280114 + (CA)n Simple_repeat Simple_repeat 2 24 0 2332 107 0 0 chr12 69002390 69002689 -75279800 - AluSg SINE Alu -10 300 2 965 125 128 116 chr12 69003284 69003604 -75278885 - MER33 DNA MER1_type 0 324 1 198 0 0 0 chr12 69003741 69003763 -75278726 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2355 83 3 7 chr12 69003763 69004063 -75278426 + AluSg SINE Alu 1 299 -11 886 192 0 0 chr12 69004145 69004296 -75278193 + FAM SINE Alu 1 49 0 2154 109 0 3 chr12 69004533 69004816 -75277673 + AluSg SINE Alu 1 282 -28 387 202 75 0 chr12 69004987 69005081 -75277408 + L2 LINE L2 3168 3268 -4 2284 96 7 3 chr12 69006415 69006716 -75275773 + AluSq SINE Alu 1 302 -11 1969 157 0 3 chr12 69007391 69007704 -75274785 + AluSx SINE Alu 1 312 0 2221 84 3 37 chr12 69007962 69008099 -75274390 + AluSq SINE Alu 1 141 -172 2428 62 0 7 chr12 69008099 69008391 -75274098 + AluY SINE Alu 1 290 -21 2488 80 0 3 chr12 69008393 69008705 -75273784 + AluY SINE Alu 1 311 0 2221 84 3 37 chr12 69008705 69008863 -75273626 + AluSq SINE Alu 142 289 -24 759 218 32 0 chr12 69008915 69009071 -75273418 - AluJb SINE Alu -15 297 137 1820 162 26 26 chr12 69009484 69009787 -75272702 + AluJb SINE Alu 1 303 -9 207 0 0 0 chr12 69010403 69010426 -75272063 + (T)n Simple_repeat Simple_repeat 1 23 0 209 281 234 0 chr12 69010581 69010709 -75271780 + MIR SINE MIR 63 220 -42 846 177 130 40 chr12 69010831 69011108 -75271381 + MER33 DNA MER1_type 23 324 0 291 304 44 30 chr12 69011461 69011596 -75270893 - MARNA DNA Mariner -354 232 96 23 33 0 0 chr12 69011976 69012006 -75270483 + AT_rich Low_complexity Low_complexity 1 30 0 556 113 149 125 chr12 69012584 69012635 -75269854 - L1MB8 LINE L1 0 6178 6130 2229 100 7 7 chr12 69012635 69012934 -75269555 + AluSq SINE Alu 1 299 -14 556 113 149 125 chr12 69012934 69013050 -75269439 - L1MB8 LINE L1 -48 6130 6007 1336 186 64 4 chr12 69013127 69013407 -75269082 - L1MB8 LINE L1 -183 5995 5699 1293 185 0 28 chr12 69013410 69013659 -75268830 - AluJo SINE Alu -17 295 54 333 122 0 0 chr12 69013691 69013740 -75268749 - AluJo SINE Alu -241 61 13 867 227 103 47 chr12 69013740 69014064 -75268425 - L1MB8 LINE L1 -685 5499 5137 1679 153 0 4 chr12 69014064 69014318 -75268171 + AluJb SINE Alu 1 253 -59 867 227 103 47 chr12 69014318 69014547 -75267942 - L1MB8 LINE L1 -1047 5137 4922 330 255 39 0 chr12 69014687 69014789 -75267700 - L1MB8 LINE L1 -1492 4654 4549 2524 74 0 0 chr12 69014834 69015144 -75267345 - AluY SINE Alu 0 311 2 451 191 316 0 chr12 69015322 69015458 -75267031 - MER3 DNA MER1_type -23 186 8 1054 206 69 0 chr12 69015463 69015667 -75266822 + MER58A DNA MER1_type 6 223 -1 711 236 61 0 chr12 69015675 69015840 -75266649 - MER5B DNA MER1_type -3 175 1 2175 118 0 10 chr12 69015979 69016284 -75266205 - AluSx SINE Alu -10 302 1 530 203 235 7 chr12 69016490 69016643 -75265846 - MER5A DNA MER1_type 0 189 2 214 296 235 9 chr12 69016652 69016767 -75265722 - MER5A DNA MER1_type 0 189 49 188 312 21 90 chr12 69016755 69016944 -75265545 + L2 LINE L2 2584 2759 -555 * 2097 119 24 0 chr12 69018542 69018835 -75263654 + AluSq SINE Alu 1 300 -13 25 31 0 0 chr12 69021779 69021811 -75260678 + AT_rich Low_complexity Low_complexity 1 32 0 180 177 145 48 chr12 69022363 69022425 -75260064 - MIR SINE MIR -124 138 71 725 187 22 0 chr12 69022773 69022907 -75259582 + MER58B DNA MER1_type 189 325 -16 1683 148 15 8 chr12 69022933 69023196 -75259293 - MER44D DNA MER2_type 0 605 469 1755 134 7 41 chr12 69023196 69023488 -75259001 + AluJb SINE Alu 1 282 -30 1339 157 0 0 chr12 69023537 69023741 -75258748 - MER44D DNA MER2_type -240 465 262 2250 93 0 30 chr12 69025322 69025622 -75256867 - AluSg SINE Alu -19 291 1 2147 111 10 0 chr12 69026718 69027007 -75255482 - AluSq SINE Alu -21 292 1 735 243 65 0 chr12 69027739 69027908 -75254581 - MER58A DNA MER1_type -2 222 43 658 211 15 8 chr12 69028035 69028168 -75254321 + AluJo SINE Alu 2 135 -177 1571 181 102 61 chr12 69028227 69028453 -75254036 - LTR40c LTR ERVL -5 460 245 2051 111 4 0 chr12 69028453 69028715 -75253774 - AluSx SINE Alu -49 263 1 1571 181 102 61 chr12 69028715 69028846 -75253643 - LTR40c LTR ERVL -220 245 79 1576 122 0 0 chr12 69028846 69029051 -75253438 + AluSq SINE Alu 86 290 -23 1571 181 102 61 chr12 69029051 69029134 -75253355 - LTR40c LTR ERVL -386 79 1 1816 172 3 0 chr12 69029762 69030059 -75252430 - AluJb SINE Alu -14 298 1 2609 59 0 0 chr12 69030271 69030576 -75251913 - AluSg SINE Alu -5 305 1 2398 174 58 43 chr12 69031172 69031631 -75250858 + MLT1F LTR MaLR 1 471 -71 2279 95 13 0 chr12 69031631 69031935 -75250554 - AluSp SINE Alu -5 308 1 2398 174 58 43 chr12 69031935 69032009 -75250480 + MLT1F LTR MaLR 471 542 0 263 86 328 17 chr12 69032062 69032120 -75250369 - MADE1 DNA Mariner 0 80 5 2478 87 0 3 chr12 69032239 69032550 -75249939 + AluSq SINE Alu 1 310 -3 1683 157 32 18 chr12 69032893 69033174 -75249315 - AluJb SINE Alu -27 285 1 681 139 177 70 chr12 69033178 69033336 -75249153 - FRAM SINE Alu -9 167 1 393 208 58 117 chr12 69033352 69033506 -75248983 + LTR45B LTR ERV1 330 474 -15 2388 73 0 10 chr12 69034819 69035131 -75247358 - AluSq SINE Alu 0 309 1 237 174 29 72 chr12 69035343 69035412 -75247077 - MIR SINE MIR -73 189 124 1600 109 137 0 chr12 69035469 69035717 -75246772 - AluSx SINE Alu -30 282 1 272 57 0 0 chr12 69035810 69035845 -75246644 - MADE1 DNA Mariner -1 79 45 196 234 16 0 chr12 69035965 69036029 -75246460 + L2 LINE L2 2994 3058 -214 2289 88 3 10 chr12 69036209 69036506 -75245983 + AluSp SINE Alu 1 295 -18 2398 77 3 10 chr12 69036508 69036808 -75245681 + AluY SINE Alu 1 298 -13 303 161 0 0 chr12 69037090 69037146 -75245343 + (TA)n Simple_repeat Simple_repeat 1 56 0 402 293 0 0 chr12 69037335 69037451 -75245038 + AluSq/x SINE Alu 6 121 -181 24 0 0 70 chr12 69037857 69037900 -75244589 + AT_rich Low_complexity Low_complexity 1 40 0 2275 118 0 0 chr12 69038112 69038416 -75244073 - AluSx SINE Alu -8 304 1 229 246 0 0 chr12 69038416 69038473 -75244016 + MIR SINE MIR 101 157 -105 868 210 0 6 chr12 69038554 69038716 -75243773 - AluSg/x SINE Alu -19 291 131 2244 98 3 0 chr12 69038717 69039013 -75243476 - AluSx SINE Alu -15 297 1 2011 158 0 3 chr12 69039150 69039454 -75243035 + AluJb SINE Alu 1 303 -9 2422 88 0 10 chr12 69039872 69040180 -75242309 + AluSc SINE Alu 1 305 -4 186 43 0 0 chr12 69040533 69040556 -75241933 + (T)n Simple_repeat Simple_repeat 1 23 0 2179 109 0 0 chr12 69041409 69041704 -75240785 - AluSx SINE Alu 0 304 10 1689 159 61 10 chr12 69042900 69043196 -75239293 + AluJb SINE Alu 1 311 -1 195 139 0 0 chr12 69043227 69043263 -75239226 + (A)n Simple_repeat Simple_repeat 1 36 0 1178 138 5 49 chr12 69043406 69043609 -75238880 - AluJb SINE Alu -102 210 17 203 200 0 15 chr12 69043993 69044058 -75238431 + (TA)n Simple_repeat Simple_repeat 1 64 0 1150 178 55 65 chr12 69044058 69044427 -75238062 + MLT1C LTR MaLR 1 329 -61 369 43 0 0 chr12 69044430 69044477 -75238012 + (TG)n Simple_repeat Simple_repeat 2 48 0 822 197 0 0 chr12 69044489 69044631 -75237858 - FRAM SINE Alu -30 146 5 383 143 0 16 chr12 69044634 69044697 -75237792 + MLT1C LTR MaLR 406 467 0 198 277 0 0 chr12 69044846 69044893 -75237596 + L3 LINE CR1 1530 1576 -1 2262 105 0 25 chr12 69044938 69045253 -75237236 + AluSx SINE Alu 1 307 -5 2219 88 3 16 chr12 69045402 69045709 -75236780 + AluY SINE Alu 1 303 -8 2029 108 65 0 chr12 69045911 69046190 -75236299 - AluSq SINE Alu -16 297 1 197 306 97 8 chr12 69046275 69046399 -75236090 + MIR SINE MIR 2 136 -126 262 128 0 24 chr12 69046402 69046448 -75236041 - FLAM SINE Alu -8 125 86 1282 182 0 22 chr12 69046448 69046673 -75235816 - AluJo SINE Alu -92 220 1 397 274 26 8 chr12 69046684 69046801 -75235688 + MIR SINE MIR 136 254 -8 2203 102 7 13 chr12 69046802 69047105 -75235384 - AluSx SINE Alu -10 302 2 190 342 26 43 chr12 69047132 69047249 -75235240 + L2 LINE L2 3154 3268 -4 1940 164 0 3 chr12 69047282 69047594 -75234895 - AluSx SINE Alu -1 311 1 313 154 86 13 chr12 69048149 69048172 -75234317 - MER58 DNA MER1_type -147 194 174 1667 158 11 7 chr12 69048172 69048450 -75234039 - AluJb SINE Alu -10 302 24 313 154 86 13 chr12 69048450 69048499 -75233990 - MER58 DNA MER1_type -167 174 1 1076 251 97 91 chr12 69048503 69048949 -75233540 - L1M4 LINE L1 -1006 5140 4698 1732 76 5 0 chr12 69048949 69049160 -75233329 + AluSp SINE Alu 96 307 -6 1076 251 97 91 chr12 69049160 69049497 -75232992 - L1M4 LINE L1 -1448 4698 4365 1662 124 4 44 chr12 69049497 69049771 -75232718 - AluY SINE Alu -48 263 1 1076 251 97 91 chr12 69049771 69050118 -75232371 - L1M4 LINE L1 -1781 4365 4002 705 272 126 52 chr12 69050118 69050603 -75231886 - MLT1H LTR MaLR 0 549 29 599 210 25 37 chr12 69050654 69050713 -75231776 - L1M4 LINE L1 -2168 3978 3920 2185 113 0 26 chr12 69050713 69051022 -75231467 - AluSx SINE Alu -11 301 1 599 210 25 37 chr12 69051022 69051124 -75231365 - L1M4 LINE L1 -2226 3920 3819 865 246 162 14 chr12 69051124 69051466 -75231023 + MLT1F1 LTR MaLR 1 411 -182 188 209 15 60 chr12 69051471 69051538 -75230951 + MIR SINE MIR 183 246 -16 235 273 36 36 chr12 69051555 69051665 -75230824 + MIR SINE MIR 111 220 -42 1305 186 163 0 chr12 69051713 69051971 -75230518 - AluJb SINE Alu -11 301 2 703 216 0 0 chr12 69052009 69052134 -75230355 + AluJb SINE Alu 2 126 -186 424 301 70 16 chr12 69052374 69052491 -75229998 - L2 LINE L2 -1 3312 3203 1620 178 23 74 chr12 69052491 69052885 -75229604 - MLT1A2 LTR MaLR 0 374 1 424 301 70 16 chr12 69052885 69052911 -75229578 - L2 LINE L2 -110 3203 3180 180 0 0 0 chr12 69052911 69052931 -75229558 + (CA)n Simple_repeat Simple_repeat 1 20 0 424 301 70 16 chr12 69052931 69052972 -75229517 - L2 LINE L2 -133 3180 3117 2299 98 23 0 chr12 69053802 69054108 -75228381 - AluSq SINE Alu 0 313 1 2260 115 3 0 chr12 69055056 69055360 -75227129 - AluSp SINE Alu -8 305 1 511 264 50 0 chr12 69055594 69055753 -75226736 + MER91A DNA MER1_type 3 169 -27 2362 92 0 7 chr12 69056034 69056328 -75226161 + AluSg SINE Alu 1 292 -18 2398 97 0 3 chr12 69056711 69057022 -75225467 + AluSx SINE Alu 1 310 -2 226 204 0 41 chr12 69057386 69057435 -75225054 - L1M1 LINE L1 -6406 1159 1113 814 247 108 8 chr12 69057436 69057687 -75224802 - MLT1J2 LTR MaLR -140 310 35 2279 100 0 0 chr12 69058835 69059125 -75223364 - AluSx SINE Alu -22 290 1 1987 127 3 26 chr12 69059142 69059313 -75223176 - AluSx SINE Alu -11 301 139 2117 103 10 13 chr12 69059313 69059613 -75222876 - AluSx SINE Alu -13 299 1 1987 127 3 26 chr12 69059613 69059749 -75222740 - AluSx SINE Alu -173 139 1 2329 117 0 0 chr12 69059963 69060270 -75222219 + AluSx SINE Alu 1 307 -5 2435 98 3 0 chr12 69060362 69060668 -75221821 + AluSp SINE Alu 1 307 -6 195 244 90 13 chr12 69061001 69061079 -75221410 - L2 LINE L2 0 3313 3230 487 181 39 24 chr12 69061184 69061311 -75221178 + FRAM SINE Alu 22 150 -26 405 272 10 10 chr12 69061312 69061415 -75221074 - FRAM SINE Alu -65 111 9 1646 166 26 3 chr12 69061423 69061731 -75220758 - L1MB7 LINE L1 -305 5879 5565 434 221 148 70 chr12 69062187 69062307 -75220182 + L1ME4a LINE L1 5748 5857 -264 1950 160 7 0 chr12 69062307 69062600 -75219889 - AluJb SINE Alu -15 297 3 434 221 148 70 chr12 69062600 69062657 -75219832 + L1ME4a LINE L1 5857 5908 -213 1235 161 190 43 chr12 69062657 69063030 -75219459 + MSTC LTR MaLR 1 428 0 2086 117 7 13 chr12 69063037 69063335 -75219154 - AluSx SINE Alu -16 296 1 434 221 148 70 chr12 69063335 69063492 -75218997 + L1ME4a LINE L1 5913 6118 -3 1986 169 5 63 chr12 69063624 69063803 -75218686 + MLT1B LTR MaLR 1 189 -201 1758 175 7 14 chr12 69063803 69064100 -75218389 + AluJb SINE Alu 1 295 -17 1986 169 5 63 chr12 69064100 69064334 -75218155 + MLT1B LTR MaLR 189 390 0 285 311 44 22 chr12 69064435 69064615 -75217874 - L2 LINE L2 -957 2357 2174 320 319 48 12 chr12 69064632 69064798 -75217691 + MIR SINE MIR 20 191 -71 224 281 30 30 chr12 69064914 69065078 -75217411 - L2 LINE L2 -1216 2098 1935 2418 70 0 38 chr12 69065784 69066098 -75216391 + AluY SINE Alu 1 302 -9 2266 123 3 0 chr12 69066107 69066416 -75216073 + AluSp SINE Alu 1 310 -3 1979 138 3 17 chr12 69066427 69066725 -75215764 + AluJb SINE Alu 3 296 -16 474 176 110 0 chr12 69066754 69066845 -75215644 - FRAM SINE Alu -6 170 70 557 254 28 34 chr12 69066972 69067149 -75215340 + MER104 DNA MER2_type 5 180 0 191 86 0 29 chr12 69067393 69067428 -75215061 + (TC)n Simple_repeat Simple_repeat 1 34 0 1320 146 0 67 chr12 69067572 69067812 -75214677 - AluJo SINE Alu -3 309 86 1875 147 3 14 chr12 69067814 69068106 -75214383 - AluJo SINE Alu -12 300 12 551 199 18 58 chr12 69069149 69069255 -75213234 + MIR SINE MIR 79 177 -85 1537 174 10 47 chr12 69069255 69069553 -75212936 - AluJo SINE Alu -25 287 1 551 199 18 58 chr12 69069553 69069617 -75212872 + MIR SINE MIR 177 242 -20 250 270 0 14 chr12 69070262 69070336 -75212153 + MIR3 SINE MIR 113 185 -23 687 127 16 16 chr12 69070549 69070675 -75211814 + L1MB4 LINE L1 6055 6180 0 3506 197 45 30 chr12 69070696 69071651 -75210838 + L1ME1 LINE L1 4810 5787 -379 915 112 0 22 chr12 69071651 69071785 -75210704 + FLAM_C SINE Alu 1 131 -2 3506 197 45 30 chr12 69071785 69072081 -75210408 + L1ME1 LINE L1 5787 6077 -89 900 241 33 16 chr12 69072339 69072584 -75209905 - MLT1K LTR MaLR -17 571 323 439 252 39 8 chr12 69073112 69073239 -75209250 - MIR SINE MIR -121 141 11 257 308 0 33 chr12 69073605 69073696 -75208793 + MIR SINE MIR 42 129 -79 1702 159 0 62 chr12 69073796 69074117 -75208372 - AluJb SINE Alu -11 301 1 2107 144 0 0 chr12 69074141 69074439 -75208050 - AluSx SINE Alu -12 300 3 338 187 67 0 chr12 69074546 69074621 -75207868 - MER113 DNA MER1_type? -441 80 1 634 299 38 17 chr12 69074633 69074868 -75207621 - MIR SINE MIR 0 262 21 187 200 17 50 chr12 69074931 69074991 -75207498 + MER5A DNA MER1_type 17 74 -115 3151 145 30 64 chr12 69074992 69075248 -75207241 + L1MA8 LINE L1 5685 5948 -343 1968 155 0 16 chr12 69075248 69075552 -75206937 + AluJo SINE Alu 1 299 -13 3151 145 30 64 chr12 69075552 69075923 -75206566 + L1MA8 LINE L1 5948 6291 0 2220 119 3 0 chr12 69076798 69077100 -75205389 - AluSx SINE Alu -9 303 1 2068 118 38 0 chr12 69077707 69077828 -75204661 + AluSx SINE Alu 1 116 -196 423 0 0 0 chr12 69077828 69077875 -75204614 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2068 118 38 0 chr12 69077875 69078041 -75204448 + AluSx SINE Alu 116 299 -13 1111 155 12 0 chr12 69078224 69078392 -75204097 + FAM SINE Alu 3 172 -3 1864 166 7 0 chr12 69078929 69079224 -75203265 + AluSx SINE Alu 1 297 -15 2324 102 0 3 chr12 69079224 69079527 -75202962 + AluSc SINE Alu 1 303 -6 255 31 0 0 chr12 69079528 69079560 -75202929 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 876 284 78 41 chr12 69079751 69080106 -75202383 - L1ME4a LINE L1 -3 6118 5733 1877 134 22 53 chr12 69080106 69080427 -75202062 - AluJo SINE Alu -1 311 1 876 284 78 41 chr12 69080427 69080638 -75201851 - L1ME4a LINE L1 -388 5733 5531 626 179 116 0 chr12 69081167 69081279 -75201210 + FLAM_C SINE Alu 1 125 -8 374 219 0 10 chr12 69082222 69082318 -75200171 + GA-rich Low_complexity Low_complexity 1 95 0 2030 124 34 0 chr12 69082320 69082611 -75199878 + AluSx SINE Alu 1 301 -11 933 179 17 0 chr12 69082615 69082788 -75199701 + AluYa5 SINE Alu 136 311 0 2085 109 0 4 chr12 69083243 69083518 -75198971 + AluJb SINE Alu 14 287 -25 229 321 46 9 chr12 69083538 69083647 -75198842 + MIR SINE MIR 150 262 0 198 154 26 0 chr12 69083756 69083795 -75198694 - MIR SINE MIR -93 115 76 346 39 20 0 chr12 69084239 69084290 -75198199 - L1PA10 LINE L1 -1 6167 6116 3459 67 2 0 chr12 69084306 69084739 -75197750 - L1PA10 LINE L1 -5 6163 5730 619 113 21 0 chr12 69084744 69084841 -75197648 - AluSp/q SINE Alu -3 310 212 1190 109 0 0 chr12 69084866 69085022 -75197467 + AluSg SINE Alu 1 156 -154 303 265 103 17 chr12 69085483 69085600 -75196889 - L3 LINE CR1 -5 1572 1446 1989 140 14 7 chr12 69085632 69085925 -75196564 + AluSx SINE Alu 1 295 -17 659 242 0 0 chr12 69085930 69086050 -75196439 - FLAM_A SINE Alu -13 120 1 2434 82 0 0 chr12 69086140 69086434 -75196055 + AluY SINE Alu 1 294 -17 504 206 38 30 chr12 69086446 69086577 -75195912 + FLAM_C SINE Alu 2 133 -10 267 127 141 28 chr12 69087022 69087093 -75195396 - LTR66 LTR ERVL -171 439 361 223 249 15 19 chr12 69088224 69088317 -75194172 - MIR SINE MIR -59 149 59 2524 81 10 0 chr12 69089589 69089898 -75192591 + AluSx SINE Alu 1 312 0 1779 181 0 10 chr12 69090154 69090457 -75192032 + AluJo SINE Alu 5 304 -8 419 0 0 19 chr12 69091436 69091488 -75191001 + (TATG)n Simple_repeat Simple_repeat 3 53 0 260 314 5 43 chr12 69091546 69091731 -75190758 + T-rich Low_complexity Low_complexity 1 178 0 * 313 333 8 40 chr12 69091597 69091822 -75190667 + CT-rich Low_complexity Low_complexity 1 217 0 390 226 116 34 chr12 69092136 69092282 -75190207 + MER103 DNA DNA 1 158 -8 1931 170 136 8 chr12 69092301 69092677 -75189812 + MSTB LTR MaLR 1 424 -2 33 25 0 0 chr12 69092792 69092832 -75189657 + AT_rich Low_complexity Low_complexity 1 40 0 2045 133 10 3 chr12 69093008 69093302 -75189187 + AluJb SINE Alu 1 296 -16 725 298 85 80 chr12 69093447 69093898 -75188591 - L1M4 LINE L1 -1392 4754 4306 2222 117 3 0 chr12 69093898 69094206 -75188283 - AluSx SINE Alu -3 309 1 725 298 85 80 chr12 69094206 69094290 -75188199 - L1M4 LINE L1 -1840 4306 4224 2765 7 0 3 chr12 69094290 69094587 -75187902 - AluYa5 SINE Alu -15 296 1 725 298 85 80 chr12 69094587 69094996 -75187493 - L1M4 LINE L1 -1922 4224 3805 454 167 0 0 chr12 69095010 69095082 -75187407 + HAL1 LINE L1 1288 1359 -1148 701 199 0 8 chr12 69095106 69095237 -75187252 + FLAM_A SINE Alu 6 135 -7 480 288 23 8 chr12 69095298 69095430 -75187059 + HAL1 LINE L1 1666 1799 -708 332 252 12 20 chr12 69095530 69095681 -75186808 + G-rich Low_complexity Low_complexity 1 244 0 1094 155 0 129 chr12 69096505 69096776 -75185713 + AluJb SINE Alu 67 302 -10 1018 171 0 0 chr12 69097032 69097184 -75185305 + AluJo SINE Alu 1 152 -160 980 165 67 45 chr12 69097184 69097451 -75185038 + pTR5 LTR ERV1 745 1017 -1421 938 276 86 44 chr12 69098136 69098652 -75183837 - L2 LINE L2 -57 3256 2763 2358 101 0 9 chr12 69098652 69098968 -75183521 + AluSq SINE Alu 1 313 0 938 276 86 44 chr12 69098968 69099194 -75183295 - L2 LINE L2 -550 2763 2479 1894 159 0 23 chr12 69099194 69099502 -75182987 + AluJb SINE Alu 1 301 -11 938 276 86 44 chr12 69099502 69099604 -75182885 - L2 LINE L2 -834 2479 2383 1980 110 0 74 chr12 69099784 69100094 -75182395 + AluSx SINE Alu 4 290 -22 333 0 0 0 chr12 69100097 69100134 -75182355 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 404 247 21 0 chr12 69100139 69100232 -75182257 + AluS SINE Alu 1 95 -208 1725 84 13 4 chr12 69100408 69100645 -75181844 - AluY SINE Alu -2 309 71 741 139 0 0 chr12 69100645 69100753 -75181736 - AluJ SINE Alu -22 290 183 807 145 8 0 chr12 69100761 69100885 -75181604 - AluJ SINE Alu -187 125 1 938 184 0 6 chr12 69101901 69102059 -75180430 - AluJb SINE Alu -18 294 138 4213 126 32 46 chr12 69102059 69103005 -75179484 - pTR5 LTR ERV1 -6 2432 1194 527 249 21 80 chr12 69103653 69103721 -75178768 + HERV16 LTR ERVL 3608 3678 -1318 2295 73 63 0 chr12 69103721 69104007 -75178482 + AluSp SINE Alu 1 304 -9 527 249 21 80 chr12 69104007 69104175 -75178314 + HERV16 LTR ERVL 3678 3830 -1166 2320 98 0 0 chr12 69104180 69104476 -75178013 - AluSg SINE Alu -14 296 1 438 119 0 0 chr12 69104508 69104567 -75177922 + FLAM SINE Alu 71 129 -14 19398 183 25 20 chr12 69104847 69106559 -75175930 + L1PA12 LINE L1 912 2614 -4970 2177 129 0 0 chr12 69106559 69106853 -75175636 + AluSx SINE Alu 1 294 -18 207 88 0 0 chr12 69106853 69106887 -75175602 + (TA)n Simple_repeat Simple_repeat 2 35 0 19398 183 25 20 chr12 69106887 69109531 -75172958 + L1PA12 LINE L1 2613 6103 -1481 1890 147 0 7 chr12 69109531 69109810 -75172679 - AluSx SINE Alu -35 277 1 922 261 13 62 chr12 69110010 69110303 -75172186 - L2 LINE L2 0 3313 3040 1885 86 116 4 chr12 69110303 69110571 -75171918 - AluSc SINE Alu 0 299 2 922 261 13 62 chr12 69110571 69110649 -75171840 - L2 LINE L2 -273 3040 2960 649 238 28 22 chr12 69111493 69111674 -75170815 + MIR SINE MIR 81 262 0 21 0 0 0 chr12 69112573 69112594 -75169895 + GC_rich Low_complexity Low_complexity 1 21 0 40 21 0 0 chr12 69112847 69112894 -75169595 + GC_rich Low_complexity Low_complexity 1 47 0 186 143 0 0 chr12 69113432 69113467 -75169022 + (T)n Simple_repeat Simple_repeat 1 35 0 874 214 46 0 chr12 69114993 69115189 -75167300 + MIR SINE MIR 15 219 -43 880 92 0 0 chr12 69115597 69115706 -75166783 - AluSq/x SINE Alu -204 109 1 1288 60 12 12 chr12 69116461 69116629 -75165860 + L1PA8 LINE L1 6005 6172 0 2217 113 0 0 chr12 69117054 69117345 -75165144 + AluSx SINE Alu 1 291 -21 2084 100 0 21 chr12 69117390 69117671 -75164818 + AluSx SINE Alu 22 296 -16 1312 112 0 0 chr12 69117672 69117842 -75164647 + AluSg/x SINE Alu 126 295 -17 261 108 0 0 chr12 69117842 69117879 -75164610 + MER45R DNA AcHobo 1012 1048 -533 1800 179 0 3 chr12 69117887 69118178 -75164311 - AluJb SINE Alu -22 290 1 2046 161 112 40 chr12 69118179 69118416 -75164073 + MER45R DNA AcHobo 1035 1253 -328 1711 188 0 7 chr12 69118416 69118709 -75163780 + AluJo SINE Alu 2 292 -20 2046 161 112 40 chr12 69118709 69118969 -75163520 + MER45R DNA AcHobo 1253 1568 -13 1754 167 0 31 chr12 69119363 69119573 -75162916 - AluJb SINE Alu -28 284 84 2360 54 7 0 chr12 69119573 69119851 -75162638 - AluY SINE Alu -22 289 10 1754 167 0 31 chr12 69119851 69119933 -75162556 - AluJb SINE Alu -228 84 1 2338 87 13 0 chr12 69120846 69121146 -75161343 - AluSp SINE Alu -9 304 1 1971 125 0 31 chr12 69122024 69122336 -75160153 - AluSx SINE Alu 0 305 3 2070 94 36 0 chr12 69122366 69122641 -75159848 + AluSq SINE Alu 1 285 -28 2322 104 7 0 chr12 69123521 69123818 -75158671 + AluSx SINE Alu 1 299 -13 298 94 0 19 chr12 69123950 69124003 -75158486 + (TG)n Simple_repeat Simple_repeat 2 53 0 1936 161 3 7 chr12 69124940 69125250 -75157239 - AluJb SINE Alu -2 310 2 356 280 100 13 chr12 69125678 69125828 -75156661 - MIR SINE MIR -79 183 21 2658 137 55 8 chr12 69126641 69127130 -75155359 + L1MB7 LINE L1 5582 6094 -90 1421 154 9 136 chr12 69127294 69127448 -75155041 - AluJo SINE Alu -24 288 197 228 35 0 0 chr12 69127448 69127477 -75155012 + (TG)n Simple_repeat Simple_repeat 2 30 0 1421 154 9 136 chr12 69127477 69127652 -75154837 - AluJo SINE Alu -115 197 1 1868 143 0 29 chr12 69128338 69128646 -75153843 - AluSx SINE Alu -13 299 1 245 352 8 23 chr12 69128823 69128997 -75153492 + GA-rich Low_complexity Low_complexity 1 171 0 4167 222 22 5 chr12 69129081 69130177 -75152312 - L1 LINE L1 -1515 4631 3475 238 253 23 23 chr12 69130436 69130523 -75151966 + CT-rich Low_complexity Low_complexity 5 91 0 227 163 20 0 chr12 69131239 69131288 -75151201 + MLT1H LTR MaLR 35 84 -465 1546 191 0 11 chr12 69131559 69131842 -75150647 + AluJb SINE Alu 22 301 -11 2150 102 0 56 chr12 69131844 69132167 -75150322 + AluSg SINE Alu 1 305 -5 3853 244 128 45 chr12 69132292 69132921 -75149568 - HAL1 LINE L1 -628 1879 1303 1915 137 20 20 chr12 69132921 69133220 -75149269 - AluJb SINE Alu -13 299 1 3853 244 128 45 chr12 69133220 69134325 -75148164 - HAL1 LINE L1 -1204 1303 2 212 346 49 0 chr12 69135207 69135288 -75147201 - L2 LINE L2 -2 3270 3186 225 0 0 0 chr12 69135510 69135535 -75146954 + (A)n Simple_repeat Simple_repeat 1 25 0 710 239 23 11 chr12 69135543 69135719 -75146770 - MER5B DNA MER1_type 0 178 1 1178 292 174 9 chr12 69135841 69136495 -75145994 + L2 LINE L2 1003 1764 -1550 255 213 0 75 chr12 69136482 69136562 -75145927 + MIR SINE MIR 110 183 -79 * 2305 67 7 3 chr12 69137287 69137572 -75144917 - AluY SINE Alu -5 306 21 980 249 18 9 chr12 69137661 69137886 -75144603 + MIR SINE MIR 9 235 -27 2217 92 0 4 chr12 69138306 69138610 -75143879 + AluSg SINE Alu 1 303 0 191 339 0 0 chr12 69140013 69140078 -75142411 - MIR3 SINE MIR 0 208 144 210 37 0 0 chr12 69140960 69140987 -75141502 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 11605 43 9 1 chr12 69140987 69143102 -75139387 - L1PA5 LINE L1 -8 6146 4022 1934 100 8 4 chr12 69143402 69143661 -75138828 + AluSq SINE Alu 1 260 -53 2214 106 0 0 chr12 69144033 69144347 -75138142 + AluSx SINE Alu 1 314 0 402 204 97 11 chr12 69144847 69144940 -75137549 - MIR3 SINE MIR -3 205 105 3549 128 5 21 chr12 69144954 69145518 -75136971 + L1MB2 LINE L1 5445 5999 -184 2314 107 69 3 chr12 69145525 69145871 -75136618 + THE1C LTR MaLR 6 374 -1 911 161 35 11 chr12 69145871 69146045 -75136444 + L1MB2 LINE L1 5994 6171 0 1475 185 3 45 chr12 69146230 69146538 -75135951 - AluJo SINE Alu -17 295 1 492 347 171 6 chr12 69146590 69146953 -75135536 + L2 LINE L2 2836 3258 -14 1714 123 214 58 chr12 69147052 69147418 -75135071 - L1MB3 LINE L1 0 6183 5728 192 77 0 0 chr12 69147418 69147444 -75135045 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 1714 123 214 58 chr12 69147444 69147507 -75134982 - L1MB3 LINE L1 -455 5728 5676 3631 102 26 0 chr12 69147590 69148092 -75134397 - L1PB2 LINE L1 -3 6148 5634 22 0 0 0 chr12 69148353 69148375 -75134114 + AT_rich Low_complexity Low_complexity 1 22 0 1911 122 49 0 chr12 69148827 69149113 -75133376 + AluSx SINE Alu 11 310 -2 466 233 52 9 chr12 69150422 69150538 -75131951 + MIR SINE MIR 12 132 -130 2131 111 0 0 chr12 69151590 69151869 -75130620 + AluSx SINE Alu 1 279 -33 261 0 0 0 chr12 69151869 69151898 -75130591 + (CAA)n Simple_repeat Simple_repeat 2 30 0 520 200 193 21 chr12 69151906 69152051 -75130438 - MIR SINE MIR -91 171 2 1802 177 10 0 chr12 69152541 69152829 -75129660 - AluSx SINE Alu -21 291 1 22 0 0 0 chr12 69152895 69152917 -75129572 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 69153978 69154006 -75128483 + AT_rich Low_complexity Low_complexity 1 28 0 974 192 62 24 chr12 69154266 69154474 -75128015 - AluJb SINE Alu -10 302 87 2226 103 0 13 chr12 69154518 69154819 -75127670 - AluSx SINE Alu -15 297 1 303 322 33 26 chr12 69155036 69155188 -75127301 - L3 LINE CR1 -7 1570 1418 239 133 22 0 chr12 69155221 69155266 -75127223 + T-rich Low_complexity Low_complexity 3 48 0 * 255 61 0 0 chr12 69155265 69155298 -75127191 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 857 193 23 12 chr12 69155301 69155472 -75127017 - FRAM SINE Alu 0 176 4 225 316 66 13 chr12 69155493 69155569 -75126920 - L3 LINE CR1 -215 1362 1283 442 245 233 0 chr12 69155759 69155918 -75126571 - MIR SINE MIR -16 246 51 2094 125 10 0 chr12 69156264 69156561 -75125928 + AluSx SINE Alu 1 300 -12 2092 95 10 27 chr12 69156923 69157219 -75125270 - AluSc SINE Alu -18 291 1 221 311 42 42 chr12 69157220 69157339 -75125150 + L2 LINE L2 3154 3272 0 1826 70 0 4 chr12 69157889 69158117 -75124372 - AluSg/x SINE Alu -3 309 83 311 191 0 0 chr12 69158118 69158165 -75124324 - Alu SINE Alu -253 47 1 1885 159 7 3 chr12 69160669 69160964 -75121525 - AluJo SINE Alu -16 296 1 1244 148 9 52 chr12 69160978 69161207 -75121282 - AluJb SINE Alu -7 305 87 1264 274 38 33 chr12 69161217 69161937 -75120552 - L1MC4 LINE L1 -898 6910 6185 1172 183 3 100 chr12 69161967 69162256 -75120233 - AluJo SINE Alu -34 278 18 30 27 0 0 chr12 69162273 69162310 -75120179 + AT_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr12 69163076 69163097 -75119392 + (CTCG)n Simple_repeat Simple_repeat 2 22 0 277 349 0 0 chr12 69165083 69165166 -75117323 - L3b LINE CR1 -64 1519 1437 1642 182 3 42 chr12 69165649 69165956 -75116533 + AluJo SINE Alu 1 295 -17 204 40 0 0 chr12 69166047 69166072 -75116417 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 2072 231 91 62 chr12 69167106 69168140 -75114349 - L2 LINE L2 0 3313 2238 353 286 33 0 chr12 69168574 69168665 -75113824 + L2 LINE L2 3220 3313 0 181 290 28 65 chr12 69170861 69170968 -75111521 - L3 LINE CR1 -1263 314 212 1611 251 143 30 chr12 69171042 69171575 -75110914 - MLT1E LTR MaLR 0 593 1 2357 102 0 7 chr12 69172886 69173190 -75109299 - AluSx SINE Alu -10 302 1 207 0 0 0 chr12 69173190 69173213 -75109276 + (T)n Simple_repeat Simple_repeat 1 23 0 3379 108 42 0 chr12 69175683 69176156 -75106333 - MER1A DNA MER1_type 0 529 37 23 54 0 0 chr12 69176495 69176532 -75105957 + AT_rich Low_complexity Low_complexity 1 37 0 395 191 43 0 chr12 69176621 69176715 -75105774 - L1M4 LINE L1 -3262 2884 2787 2490 76 3 0 chr12 69178206 69178510 -75103979 + AluY SINE Alu 1 305 -6 1057 248 16 4 chr12 69178990 69179232 -75103257 - MIR SINE MIR 0 262 18 645 331 21 16 chr12 69179381 69179623 -75102866 - MIR SINE MIR -6 256 14 204 319 192 39 chr12 69180072 69180301 -75102188 + L2 LINE L2 2817 3080 -192 1872 166 0 3 chr12 69180557 69180873 -75101616 + AluSx SINE Alu 1 315 0 1496 189 51 4 chr12 69181501 69181776 -75100713 - AluJo SINE Alu -24 288 1 1691 172 17 17 chr12 69182278 69182575 -75099914 - AluJo SINE Alu -15 297 1 21 36 0 0 chr12 69182689 69182717 -75099772 + AT_rich Low_complexity Low_complexity 1 28 0 3120 112 22 0 chr12 69182864 69183311 -75099178 - L1MA2 LINE L1 0 6304 5848 3774 79 8 10 chr12 69183317 69183834 -75098655 - L1MA3 LINE L1 -370 7354 6839 314 111 91 37 chr12 69183834 69183925 -75098564 - AluSc SINE Alu -35 264 186 2489 67 0 3 chr12 69183927 69184226 -75098263 + AluY SINE Alu 1 298 -13 1589 107 0 19 chr12 69184229 69184445 -75098044 - AluSq SINE Alu -101 212 1 5617 166 23 7 chr12 69184445 69185527 -75096962 - L1MA3 LINE L1 -748 6817 5718 * 13285 139 20 74 chr12 69185499 69186756 -75095733 - L1P3 LINE L1 -2626 3835 2512 17073 87 5 3 chr12 69186756 69189770 -75092719 - L1PA7 LINE L1 0 6154 3136 13285 139 20 74 chr12 69189770 69192436 -75090053 - L1P3 LINE L1 -3949 2512 1 20853 137 65 17 chr12 69192452 69192966 -75089523 - L1MA3 LINE L1 -3890 2571 2083 2455 93 0 3 chr12 69192966 69193276 -75089213 - AluY SINE Alu -2 309 1 20853 137 65 17 chr12 69193276 69194432 -75088057 - L1MA3 LINE L1 -4378 2083 984 2550 137 28 31 chr12 69194432 69194854 -75087635 - MSTB LTR MaLR -1 425 5 20853 137 65 17 chr12 69194854 69196687 -75085802 - L1MA3 LINE L1 -5477 984 -1101 1569 148 72 4 chr12 69196806 69197083 -75085406 - L1M1 LINE L1 -6489 1076 781 271 247 140 0 chr12 69197218 69197311 -75085178 - L2 LINE L2 -14 3258 3153 311 173 12 0 chr12 69197502 69197583 -75084906 + (TG)n Simple_repeat Simple_repeat 1 82 0 327 336 0 0 chr12 69197886 69198011 -75084478 - L2 LINE L2 -567 2747 2623 1852 181 3 3 chr12 69198490 69198799 -75083690 - AluJb SINE Alu -3 309 1 734 153 15 23 chr12 69198801 69198932 -75083557 - AluJo/FLAM SINE Alu -169 133 4 339 294 59 20 chr12 69199196 69199349 -75083140 - MIR3 SINE MIR -31 177 19 381 320 82 22 chr12 69200104 69200373 -75082116 + L3 LINE CR1 366 650 -927 433 352 74 4 chr12 69200385 69200615 -75081874 + L3 LINE CR1 1332 1577 0 22 35 0 0 chr12 69201584 69201613 -75080876 + AT_rich Low_complexity Low_complexity 1 29 0 232 230 48 71 chr12 69201662 69201788 -75080701 - L1ME3A LINE L1 -104 6066 5944 22 0 0 0 chr12 69202425 69202447 -75080042 + AT_rich Low_complexity Low_complexity 1 22 0 1561 139 0 0 chr12 69204055 69204271 -75078218 + AluJo SINE Alu 1 216 -96 618 278 58 55 chr12 69204271 69204402 -75078087 + L1MC4a LINE L1 5715 5844 -1964 1510 195 12 0 chr12 69204402 69204648 -75077841 - AluJo SINE Alu -63 249 1 618 278 58 55 chr12 69204648 69204897 -75077592 + L1MC4a LINE L1 5844 6096 -1712 1452 98 5 24 chr12 69204921 69205126 -75077363 - AluSg/x SINE Alu -16 294 94 655 214 8 0 chr12 69205512 69205643 -75076846 + FLAM_C SINE Alu 2 133 -10 2298 100 14 0 chr12 69205665 69205956 -75076533 + AluSg SINE Alu 1 295 -15 214 235 0 20 chr12 69206093 69206144 -75076345 + L2 LINE L2 3242 3291 -22 227 280 0 0 chr12 69206223 69206273 -75076216 - L3 LINE CR1 -111 1466 1417 617 306 29 20 chr12 69207202 69207447 -75075042 - L3 LINE CR1 -257 1320 1074 401 290 20 70 chr12 69210165 69210365 -75072124 - MIR SINE MIR -59 203 14 818 161 224 62 chr12 69210440 69210504 -75071985 + MER58A DNA MER1_type 1 53 -2367 2249 131 0 0 chr12 69210504 69210809 -75071680 - AluSx SINE Alu -7 305 1 818 161 224 62 chr12 69210809 69210936 -75071553 + MER58A DNA MER1_type 53 223 -1 368 262 191 7 chr12 69211008 69211149 -75071340 - MER5A DNA MER1_type -3 186 20 2501 98 36 14 chr12 69211149 69211505 -75070984 - THE1B LTR MaLR 0 364 1 2176 130 3 0 chr12 69212569 69212869 -75069620 - AluSx SINE Alu -11 301 1 227 211 0 99 chr12 69215351 69215422 -75067067 - MIR SINE MIR -113 149 86 618 285 148 7 chr12 69217730 69218028 -75064461 - L1ME3A LINE L1 -280 5841 5502 455 255 35 14 chr12 69218163 69218304 -75064185 - L1ME3A LINE L1 -2104 4042 3899 349 295 16 8 chr12 69218407 69218529 -75063960 + L1ME LINE L1 5677 5799 -322 1648 176 24 39 chr12 69218800 69219136 -75063353 - MLT1A2 LTR MaLR 0 374 44 2015 150 0 3 chr12 69219530 69219823 -75062666 - AluSx SINE Alu -20 292 1 1969 146 58 3 chr12 69219880 69220209 -75062280 - MER7A DNA MER2_type -1 345 1 347 295 79 86 chr12 69220209 69220487 -75062002 + L2 LINE L2 2613 2888 -426 231 304 138 0 chr12 69220490 69220628 -75061861 - MIR SINE MIR -1 261 105 629 86 0 0 chr12 69220799 69220880 -75061609 - AluSg/x SINE Alu -15 295 215 343 243 126 0 chr12 69221123 69221234 -75061255 + MIR SINE MIR 49 173 -89 380 331 106 27 chr12 69221237 69221530 -75060959 + MLT1K LTR MaLR 1 316 -272 493 324 40 25 chr12 69221602 69221877 -75060612 + MLT1K LTR MaLR 310 588 0 22 35 0 0 chr12 69222367 69222396 -75060093 + GC_rich Low_complexity Low_complexity 1 29 0 1223 14 0 0 chr12 69222558 69222696 -75059793 + L1PA5 LINE L1 6013 6150 -4 826 261 99 34 chr12 69223361 69223805 -75058684 - L1MC4a LINE L1 -1913 5895 5423 2434 62 3 34 chr12 69223881 69224202 -75058287 - AluY SINE Alu 0 311 1 385 292 53 39 chr12 69224202 69224616 -75057873 - L1MC4a LINE L1 -846 5300 4881 285 179 0 18 chr12 69225063 69225119 -75057370 - L2 LINE L2 -332 2981 2927 23 0 0 0 chr12 69225327 69225350 -75057139 + AT_rich Low_complexity Low_complexity 1 23 0 1862 166 84 54 chr12 69226396 69226860 -75055629 + Charlie1b DNA MER1_type 40 517 -6 471 254 0 0 chr12 69226898 69227008 -75055481 - MIR SINE MIR 0 262 153 1029 163 0 12 chr12 69227011 69227177 -75055312 - FRAM SINE Alu -13 163 1 406 273 25 0 chr12 69227197 69227318 -75055171 - MIR SINE MIR -126 136 13 185 224 20 20 chr12 69228539 69228588 -75053901 - L2 LINE L2 -86 3186 3138 2543 74 0 0 chr12 69229813 69230122 -75052367 - AluSx SINE Alu -3 309 1 2145 176 161 112 chr12 69230386 69231057 -75051432 + LTR28 LTR ERV1 317 1020 0 200 315 168 24 chr12 69231065 69231398 -75051091 + L2 LINE L2 2872 3252 -61 826 209 21 39 chr12 69231681 69231915 -75050574 - MER67C LTR ERV1 -307 403 174 232 312 64 28 chr12 69232270 69232379 -75050110 + L2 LINE L2 3143 3255 -17 255 214 18 0 chr12 69232381 69232437 -75050052 + (CA)n Simple_repeat Simple_repeat 2 58 0 1377 268 71 44 chr12 69232528 69233032 -75049457 + MLT1K LTR MaLR 37 554 -34 203 310 39 54 chr12 69233417 69233546 -75048943 - L2 LINE L2 -349 2964 2838 299 303 223 5 chr12 69234253 69234441 -75048048 + MLT1K LTR MaLR 44 272 -316 5961 108 14 10 chr12 69234633 69235557 -75046932 - L1P LINE L1 -1548 4598 3671 4989 162 1 35 chr12 69236035 69236882 -75045607 - HERVE LTR ERV1 -3494 4319 3502 212 351 0 0 chr12 69237214 69237271 -75045218 + C-rich Low_complexity Low_complexity 1 57 0 192 214 0 0 chr12 69237276 69237304 -75045185 + A-rich Low_complexity Low_complexity 1 28 0 1977 78 8 4 chr12 69239907 69240163 -75042326 + AluY SINE Alu 43 299 -12 1605 107 0 19 chr12 69240166 69240382 -75042107 - AluSq SINE Alu -101 212 1 3801 186 25 1 chr12 69240382 69241166 -75041323 - L1 LINE L1 -748 5398 4596 331 384 0 0 chr12 69241458 69241630 -75040859 + C-rich Low_complexity Low_complexity 1 172 0 30 45 0 0 chr12 69242709 69242753 -75039736 + GC_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr12 69242969 69243015 -75039474 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr12 69243077 69243098 -75039391 + GC_rich Low_complexity Low_complexity 1 21 0 290 185 12 0 chr12 69243460 69243541 -75038948 + (TG)n Simple_repeat Simple_repeat 1 82 0 803 215 9 23 chr12 69244347 69244561 -75037928 + AluY SINE Alu 95 305 -6 980 252 16 4 chr12 69245039 69245281 -75037208 - MIR SINE MIR 0 262 18 579 330 14 9 chr12 69245457 69245672 -75036817 - MIR SINE MIR -33 229 14 1897 166 0 3 chr12 69246606 69246922 -75035567 + AluSx SINE Alu 1 315 0 1519 189 51 4 chr12 69247550 69247825 -75034664 - AluJo SINE Alu -24 288 1 1660 172 20 17 chr12 69248327 69248623 -75033866 - AluJo SINE Alu -15 297 1 21 36 0 0 chr12 69248737 69248765 -75033724 + AT_rich Low_complexity Low_complexity 1 28 0 2982 112 22 0 chr12 69248912 69249359 -75033130 - L1MA2 LINE L1 0 6304 5848 3791 80 8 8 chr12 69249365 69249881 -75032608 - L1MA3 LINE L1 -370 5935 5420 317 103 136 22 chr12 69249881 69249972 -75032517 - AluSc SINE Alu -35 264 186 2482 70 0 3 chr12 69249974 69250273 -75032216 + AluY SINE Alu 1 298 -13 1594 96 10 0 chr12 69250276 69250485 -75032004 - AluY SINE Alu -100 211 1 389 191 43 0 chr12 69251977 69252071 -75030418 + L1M4 LINE L1 2787 2884 -3262 23 54 0 0 chr12 69252160 69252197 -75030292 + AT_rich Low_complexity Low_complexity 1 37 0 3389 108 42 0 chr12 69252536 69253009 -75029480 + MER1A DNA MER1_type 37 529 0 207 0 0 0 chr12 69255479 69255502 -75026987 + (A)n Simple_repeat Simple_repeat 1 23 0 2369 102 0 7 chr12 69255502 69255806 -75026683 + AluSx SINE Alu 1 302 -10 1535 255 113 32 chr12 69257148 69257650 -75024839 + MLT1E LTR MaLR 51 593 0 326 286 33 0 chr12 69260027 69260118 -75022371 - L2 LINE L2 0 3313 3220 1825 233 91 63 chr12 69260552 69261587 -75020902 + L2 LINE L2 2238 3313 0 204 40 0 0 chr12 69262621 69262646 -75019843 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 1677 179 3 42 chr12 69262737 69263044 -75019445 - AluJo SINE Alu -17 295 1 258 349 0 0 chr12 69263527 69263610 -75018879 + L3b LINE CR1 1437 1519 -64 189 0 0 0 chr12 69265598 69265619 -75016870 + (CGAG)n Simple_repeat Simple_repeat 2 22 0 30 27 0 0 chr12 69266385 69266422 -75016067 + AT_rich Low_complexity Low_complexity 1 37 0 1187 194 0 97 chr12 69266439 69266728 -75015761 + AluJo SINE Alu 18 278 -34 1258 274 38 33 chr12 69266758 69267478 -75015011 + L1MC4 LINE L1 6185 7002 -898 1260 148 9 52 chr12 69267488 69267717 -75014772 + AluJb SINE Alu 87 305 -7 1893 159 7 3 chr12 69267731 69268026 -75014463 + AluJo SINE Alu 1 296 -16 1571 113 0 13 chr12 69270576 69270807 -75011682 + AluSg/x SINE Alu 83 310 -2 186 311 42 42 chr12 69271358 69271477 -75011012 - L2 LINE L2 0 3272 3154 2078 101 10 27 chr12 69271478 69271774 -75010715 + AluSc SINE Alu 1 291 -18 2105 125 10 0 chr12 69272136 69272433 -75010056 - AluSx SINE Alu -12 300 1 394 250 219 0 chr12 69272768 69272938 -75009551 + MIR SINE MIR 41 246 -16 207 324 0 15 chr12 69273136 69273204 -75009285 + L3 LINE CR1 1296 1362 -215 867 193 23 12 chr12 69273225 69273396 -75009093 + FRAM SINE Alu 4 176 0 255 61 0 0 chr12 69273399 69273432 -75009057 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 239 133 22 0 chr12 69273431 69273476 -75009013 + A-rich Low_complexity Low_complexity 3 48 0 * 266 335 26 20 chr12 69273509 69273661 -75008828 + L3 LINE CR1 1418 1570 -7 2209 103 0 17 chr12 69273878 69274180 -75008309 + AluSx SINE Alu 1 297 -15 982 192 62 24 chr12 69274224 69274432 -75008057 + AluJb SINE Alu 87 302 -10 21 36 0 0 chr12 69274692 69274720 -75007769 + AT_rich Low_complexity Low_complexity 1 28 0 524 271 33 63 chr12 69275859 69275912 -75006577 + L1MC4a LINE L1 5803 5856 -1952 1510 195 12 0 chr12 69275912 69276158 -75006331 - AluJo SINE Alu -63 249 1 524 271 33 63 chr12 69276158 69276407 -75006082 + L1MC4a LINE L1 5856 6096 -1712 1452 98 5 24 chr12 69276431 69276636 -75005853 - AluSg/x SINE Alu -16 294 94 655 214 8 0 chr12 69277022 69277153 -75005336 + FLAM_C SINE Alu 2 133 -10 2237 202 20 2 chr12 69277331 69277821 -75004668 + L1 LINE L1 4900 5398 -748 1233 165 0 23 chr12 69277821 69278039 -75004450 + AluSq SINE Alu 1 213 -100 358 291 19 19 chr12 69278285 69278443 -75004046 + C-rich Low_complexity Low_complexity 2 159 0 522 333 147 36 chr12 69278812 69279445 -75003044 - L3 LINE CR1 -12 1565 855 1739 183 0 3 chr12 69279445 69279745 -75002744 - AluJb SINE Alu -13 299 1 522 333 147 36 chr12 69279745 69279772 -75002717 - L3 LINE CR1 -722 855 832 2264 90 0 17 chr12 69279791 69280090 -75002399 - AluSq SINE Alu -16 297 4 542 223 0 0 chr12 69280100 69280194 -75002295 - FLAM_A SINE Alu -21 121 28 616 97 11 0 chr12 69280222 69280315 -75002174 - L1PA13 LINE L1 -8 6155 6062 2668 87 16 3 chr12 69280315 69280790 -75001699 - L1PA13 LINE L1 -545 5618 5139 210 271 43 0 chr12 69280942 69281012 -75001477 - L3 LINE CR1 -858 719 647 388 226 0 0 chr12 69282181 69282265 -75000224 + L2 LINE L2 2006 2089 -1225 2401 159 10 3 chr12 69282265 69282656 -74999833 + MER57A LTR ERV1 1 394 -9 723 250 247 0 chr12 69282660 69282952 -74999537 + L2 LINE L2 2086 2449 -865 * 1948 226 143 10 chr12 69282939 69283527 -74998962 - L2 LINE L2 -472 2842 2177 1090 156 78 39 chr12 69283575 69283780 -74998709 + MER20 DNA MER1_type 6 218 -1 1242 202 111 37 chr12 69283781 69283972 -74998517 - L2 LINE L2 -1144 2170 1995 675 192 0 8 chr12 69283972 69284097 -74998392 + FLAM_A SINE Alu 4 127 -6 1242 202 111 37 chr12 69284097 69284311 -74998178 - L2 LINE L2 -1319 1995 1735 351 303 97 11 chr12 69284697 69284882 -74997607 + L2 LINE L2 2600 2800 -514 274 311 66 74 chr12 69285616 69285860 -74996629 - L2 LINE L2 -2 3270 3029 529 97 0 0 chr12 69285867 69285939 -74996550 + AluSg/x SINE Alu 215 286 -26 312 70 0 0 chr12 69285939 69285982 -74996507 + (CTAA)n Simple_repeat Simple_repeat 2 44 0 1932 144 7 14 chr12 69286624 69286915 -74995574 - AluJo SINE Alu -23 289 1 321 169 17 0 chr12 69286915 69286974 -74995515 - L1MB3 LINE L1 -41 6142 6083 300 27 0 0 chr12 69287220 69287257 -74995232 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 209 241 24 36 chr12 69288052 69288135 -74994354 + L2 LINE L2 2998 3079 -193 495 219 73 0 chr12 69288263 69288386 -74994103 - FLAM_C SINE Alu -1 132 1 312 269 108 30 chr12 69288437 69288604 -74993885 - L1ME4a LINE L1 -2 6119 5940 2450 91 0 0 chr12 69288635 69288944 -74993545 - AluSc SINE Alu 0 309 1 249 163 0 0 chr12 69289038 69289087 -74993402 + CT-rich Low_complexity Low_complexity 2 50 0 2040 136 6 28 chr12 69289101 69289418 -74993071 - AluSx SINE Alu -2 310 1 371 228 9 35 chr12 69289461 69289575 -74992914 - L1ME4a LINE L1 -345 5776 5666 690 272 19 53 chr12 69289610 69289875 -74992614 - L1ME LINE L1 -376 5745 5490 258 211 53 42 chr12 69290381 69290476 -74992013 + L3b LINE CR1 1102 1197 -386 668 232 40 0 chr12 69291670 69291847 -74990642 + MIR SINE MIR 75 258 -4 197 196 71 18 chr12 69292405 69292461 -74990028 + MIR SINE MIR 36 94 -168 269 329 48 48 chr12 69293698 69293844 -74988645 + MIR3 SINE MIR 37 182 -26 474 103 46 23 chr12 69294741 69294828 -74987661 + L1MC2 LINE L1 6251 6339 -5 183 250 125 0 chr12 69295081 69295121 -74987368 + MIR SINE MIR 207 251 -11 * 224 234 0 0 chr12 69295090 69295137 -74987352 + L2 LINE L2 3266 3312 -1 313 276 106 24 chr12 69295546 69295716 -74986773 + L2 LINE L2 3130 3313 0 295 264 14 0 chr12 69295827 69295899 -74986590 - L2 LINE L2 0 3272 3200 217 350 139 7 chr12 69295940 69296093 -74986396 + MIR SINE MIR 45 217 -45 2354 101 16 0 chr12 69297275 69297582 -74984907 + AluSx SINE Alu 1 312 0 793 235 29 5 chr12 69299921 69300125 -74982364 - MER20B DNA MER1_type -29 754 546 285 254 32 0 chr12 69300128 69300191 -74982298 - MER20B DNA MER1_type -715 68 4 427 278 43 115 chr12 69300228 69300462 -74982027 - L3 LINE CR1 -224 1353 1137 1850 148 36 39 chr12 69301077 69301441 -74981048 + L1MA9 LINE L1 5950 6312 0 28 0 0 0 chr12 69301830 69301858 -74980631 + AT_rich Low_complexity Low_complexity 1 28 0 358 278 105 59 chr12 69301968 69302274 -74980215 - L2 LINE L2 -20 3252 2933 535 289 50 1 chr12 69302655 69302818 -74979671 + MIR SINE MIR 31 199 -62 202 268 36 18 chr12 69303049 69303105 -74979384 + MIR3 SINE MIR 114 170 -38 372 291 10 19 chr12 69303190 69303293 -74979196 + MER5B DNA MER1_type 7 108 -70 1098 212 74 52 chr12 69304087 69304165 -74978324 - L1ME4a LINE L1 -169 5952 5877 1015 62 78 0 chr12 69304165 69304294 -74978195 + MER85 DNA T2_type 1 139 0 1098 212 74 52 chr12 69304294 69304621 -74977868 - L1ME4a LINE L1 -244 5877 5538 22 35 0 0 chr12 69304636 69304665 -74977824 + AT_rich Low_complexity Low_complexity 1 29 0 1645 166 129 12 chr12 69306231 69306556 -74975933 - MLT1A1 LTR MaLR 0 365 3 274 213 225 0 chr12 69306770 69306850 -74975639 + L2 LINE L2 3199 3296 -17 837 199 74 0 chr12 69307164 69307340 -74975149 - MER5A DNA MER1_type 0 189 1 552 239 144 12 chr12 69307374 69307541 -74974948 + MIR SINE MIR 55 243 -19 368 244 295 16 chr12 69307689 69307882 -74974607 - MIR SINE MIR -14 248 2 1991 136 20 0 chr12 69307928 69308229 -74974260 - AluSq SINE Alu -6 307 1 206 250 0 0 chr12 69308501 69308553 -74973936 + A-rich Low_complexity Low_complexity 1 52 0 414 225 178 52 chr12 69308738 69308969 -74973520 - MER50 LTR ERV1 -465 269 10 414 226 18 24 chr12 69309774 69309942 -74972547 + (TATAA)n Simple_repeat Simple_repeat 1 167 0 348 141 78 0 chr12 69310910 69310974 -74971515 - U2 snRNA snRNA -119 69 1 * 2263 138 12 0 chr12 69310973 69311299 -74971190 - MER7A DNA MER2_type -15 331 4 1539 125 0 9 chr12 69311346 69311570 -74970919 - AluJb SINE Alu -4 308 87 1996 108 0 15 chr12 69311888 69312157 -74970332 + AluSc SINE Alu 1 265 -44 13849 206 29 23 chr12 69312163 69313317 -74969172 - L1PBa LINE L1 -966 5896 4750 2156 139 30 15 chr12 69313317 69313649 -74968840 + MER1B DNA MER1_type 1 337 0 13849 206 29 23 chr12 69313649 69316665 -74965824 - L1PBa LINE L1 -2112 4750 1609 276 30 0 0 chr12 69316666 69316699 -74965790 + (TG)n Simple_repeat Simple_repeat 2 34 0 726 181 118 7 chr12 69316701 69316845 -74965644 - AluSg/x SINE Alu -32 280 121 6359 201 26 26 chr12 69316849 69317111 -74965378 - L1PBa LINE L1 -5224 1639 1379 2313 93 0 3 chr12 69317111 69317402 -74965087 - AluY SINE Alu -17 294 5 6359 201 26 26 chr12 69317402 69319685 -74962804 - L1PBa LINE L1 -5484 1379 3 291 71 0 0 chr12 69320151 69320193 -74962296 + (TG)n Simple_repeat Simple_repeat 2 43 0 180 342 13 38 chr12 69320399 69320478 -74962011 + MIR SINE MIR 32 108 -100 394 286 0 10 chr12 69321478 69321576 -74960913 + L2 LINE L2 3199 3295 -18 262 286 6 6 chr12 69321729 69321890 -74960599 + (TA)n Simple_repeat Simple_repeat 2 162 0 592 271 45 0 chr12 69322053 69322177 -74960312 - MER5B DNA MER1_type -16 162 28 2117 155 47 39 chr12 69322177 69322564 -74959925 - MLT1B LTR MaLR 0 390 1 592 271 45 0 chr12 69322564 69322594 -74959895 - MER5B DNA MER1_type -150 28 1 316 300 156 13 chr12 69325561 69325798 -74956691 + L1MDa LINE L1 1144 1414 -5126 1411 129 0 43 chr12 69326001 69326234 -74956255 + AluJb SINE Alu 87 309 -3 762 257 105 39 chr12 69326238 69326677 -74955812 + HAL1 LINE L1 1237 1704 -803 306 291 0 19 chr12 69326716 69326819 -74955670 - LTR33A LTR ERVL 0 523 423 354 336 84 28 chr12 69327335 69327728 -74954761 + L1ME3 LINE L1 5424 5838 -324 1931 174 67 3 chr12 69327753 69328097 -74954392 + MER47A DNA MER2_type 1 366 0 524 237 108 56 chr12 69328186 69328418 -74954071 + MLT1D LTR MaLR 1 244 -261 851 220 96 5 chr12 69328527 69328736 -74953753 + MLT1D LTR MaLR 278 505 0 2813 22 0 0 chr12 69329129 69329443 -74953046 + AluYb8 SINE Alu 1 314 -4 2382 205 43 4 chr12 69330115 69330598 -74951891 - MLT1D LTR MaLR -3 502 1 1377 204 120 96 chr12 69331319 69331865 -74950624 - MLT1F1 LTR MaLR -1 566 7 866 162 0 7 chr12 69332084 69332220 -74950269 + AluSg/x SINE Alu 154 288 -22 406 303 152 25 chr12 69332358 69332509 -74949980 + MIR SINE MIR 20 203 -59 2275 157 8 19 chr12 69332509 69332879 -74949610 - MER47A DNA MER2_type 0 366 1 406 303 152 25 chr12 69332879 69332925 -74949564 + MIR SINE MIR 203 242 -20 352 277 50 0 chr12 69333614 69333715 -74948774 - MIR SINE MIR -35 227 122 268 257 43 0 chr12 69333778 69333848 -74948641 + L2 LINE L2 3157 3229 -43 333 0 0 0 chr12 69334769 69334806 -74947683 + (TG)n Simple_repeat Simple_repeat 2 38 0 459 0 0 0 chr12 69335394 69335445 -74947044 + (CA)n Simple_repeat Simple_repeat 1 51 0 189 0 0 0 chr12 69336099 69336120 -74946369 + (CTG)n Simple_repeat Simple_repeat 2 22 0 401 238 25 0 chr12 69338022 69338102 -74944387 - L2 LINE L2 -8 3264 3183 710 162 0 9 chr12 69338479 69338584 -74943905 + FLAM_A SINE Alu 20 123 -19 760 306 74 24 chr12 69339136 69339278 -74943211 + L2 LINE L2 2916 3049 -264 2092 120 0 23 chr12 69339278 69339578 -74942911 - AluSx SINE Alu -19 293 1 760 306 74 24 chr12 69339578 69339814 -74942675 + L2 LINE L2 3049 3313 0 238 154 0 0 chr12 69340246 69340285 -74942204 + L2 LINE L2 3265 3303 -10 25 0 0 0 chr12 69340325 69340350 -74942139 + AT_rich Low_complexity Low_complexity 1 25 0 1296 254 114 11 chr12 69341013 69341372 -74941117 + MSTD LTR MaLR 1 396 0 503 167 44 0 chr12 69342897 69342987 -74939502 - MER58C DNA MER1_type -3 212 119 404 258 94 4 chr12 69343693 69343926 -74938563 + L1ME4a LINE L1 5746 6036 -85 2094 134 7 0 chr12 69343926 69344232 -74938257 - AluSc SINE Alu 0 309 2 258 273 15 0 chr12 69345023 69345089 -74937400 - L2 LINE L2 -335 2978 2912 184 403 0 14 chr12 69345075 69345147 -74937342 - L2 LINE L2 -80 3192 3122 * 424 248 47 54 chr12 69345210 69345359 -74937130 + L2 LINE L2 3165 3312 -1 185 255 59 0 chr12 69346149 69346200 -74936289 - MIR SINE MIR -136 126 73 2190 123 0 22 chr12 69346613 69346931 -74935558 + AluSx SINE Alu 1 311 -1 17901 131 25 10 chr12 69346951 69347663 -74934826 - L1PA11 LINE L1 -2 7610 6910 1927 146 0 7 chr12 69347663 69347975 -74934514 + AluSx SINE Alu 1 310 0 17901 131 25 10 chr12 69347975 69348574 -74933915 - L1PA11 LINE L1 -702 6910 6321 2056 130 10 3 chr12 69348574 69348874 -74933615 - AluSq SINE Alu -7 306 5 17901 131 25 10 chr12 69348874 69351660 -74930829 - L1PA11 LINE L1 -1291 6321 3466 4456 224 26 57 chr12 69351658 69353195 -74929294 - L1PA11 LINE L1 -4985 2599 47 * 409 253 13 0 chr12 69353322 69353401 -74929088 - MER5B DNA MER1_type -1 177 98 3288 156 4 7 chr12 69353402 69354344 -74928145 + L1P5 LINE L1 4639 5577 -577 1244 192 20 98 chr12 69354347 69354516 -74927973 + MLT1A2 LTR MaLR 1 182 -192 2131 68 0 8 chr12 69354516 69354781 -74927708 + AluY SINE Alu 30 292 -19 1244 192 20 98 chr12 69354781 69355017 -74927472 + MLT1A2 LTR MaLR 182 374 0 1775 180 3 10 chr12 69355066 69355360 -74927129 + AluJb SINE Alu 1 292 -20 23 0 0 0 chr12 69355645 69355668 -74926821 + AT_rich Low_complexity Low_complexity 1 23 0 619 234 49 68 chr12 69356580 69356968 -74925521 + L1MCc LINE L1 1262 1857 -4895 * 2480 220 82 18 chr12 69356967 69357132 -74925357 + L1MCc LINE L1 3113 3266 -3675 2239 126 0 0 chr12 69357132 69357433 -74925056 + AluSq SINE Alu 5 305 -8 2480 220 82 18 chr12 69357433 69358117 -74924372 + L1MCc LINE L1 3266 4017 -2924 907 115 14 36 chr12 69358183 69358322 -74924167 + AluSq/x SINE Alu 1 136 -177 2135 122 0 3 chr12 69358322 69358633 -74923856 + AluSx SINE Alu 1 310 -2 602 299 60 3 chr12 69358634 69358918 -74923571 + L1MCc LINE L1 4089 4388 -2553 471 0 0 0 chr12 69359324 69359384 -74923105 - L1HS LINE L1 -2 6153 6094 2079 139 55 6 chr12 69359962 69360307 -74922182 - THE1B LTR MaLR -2 362 1 215 357 102 20 chr12 69360399 69360497 -74921992 - L2 LINE L2 -9 3263 3158 288 0 0 0 chr12 69360616 69360648 -74921841 + (CA)n Simple_repeat Simple_repeat 1 32 0 268 189 189 9 chr12 69360648 69360754 -74921735 + L1MA9 LINE L1 6164 6288 -24 2108 110 21 0 chr12 69361009 69361291 -74921198 + AluSg SINE Alu 1 288 -22 408 255 170 13 chr12 69362540 69362693 -74919796 + MIR SINE MIR 86 262 0 261 233 17 0 chr12 69363664 69363724 -74918765 + MLT1L LTR MaLR 216 276 -339 276 113 0 57 chr12 69363967 69364020 -74918469 - MIR SINE MIR -119 143 94 1126 154 32 0 chr12 69364217 69364437 -74918052 - L1MA9 LINE L1 -3 6309 6083 680 201 14 0 chr12 69364439 69364583 -74917906 - L1MA9 LINE L1 -284 6028 5883 4342 171 50 13 chr12 69364594 69364617 -74917872 - L1P LINE L1 -5187 959 938 22668 68 7 1 chr12 69364617 69368423 -74914066 - L1PA6 LINE L1 -13 6141 2316 4342 171 50 13 chr12 69368423 69369314 -74913175 - L1P LINE L1 -5208 938 11 274 215 15 0 chr12 69369318 69369383 -74913106 - L1M4 LINE L1 -3950 2196 2131 216 67 0 0 chr12 69369633 69369663 -74912826 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 235 125 0 0 chr12 69370199 69370239 -74912250 + Charlie4 DNA MER1_type 92 131 -1830 1198 74 11 6 chr12 69370301 69370476 -74912013 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 889 105 32 0 chr12 69370482 69370606 -74911883 - AluSg/x SINE Alu -46 264 137 689 251 75 67 chr12 69370638 69371024 -74911465 - MLT1H LTR MaLR -113 436 48 1915 164 34 13 chr12 69371024 69371403 -74911086 + L1MC1 LINE L1 5938 6324 -9 1808 169 7 14 chr12 69371406 69371696 -74910793 + AluJb SINE Alu 1 288 -24 624 242 0 0 chr12 69371794 69371955 -74910534 + Charlie4 DNA MER1_type 134 294 -1667 462 171 86 9 chr12 69372244 69372349 -74910140 + Charlie4 DNA MER1_type 1843 1955 -6 935 277 17 4 chr12 69372660 69372898 -74909591 + MER57-int LTR ERV1 3 243 -7294 527 148 7 84 chr12 69373702 69373844 -74908645 + MER57-int LTR ERV1 299 429 -4507 234 0 0 0 chr12 69373872 69373898 -74908591 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3106 187 52 100 chr12 69374257 69374876 -74907613 + MER57-int LTR ERV1 4788 5333 -2204 2144 111 3 7 chr12 69374876 69375174 -74907315 - AluSx SINE Alu -15 297 1 3106 187 52 100 chr12 69375174 69375641 -74906848 + MER57-int LTR ERV1 5333 5821 -1716 1444 254 40 64 chr12 69375687 69376407 -74906082 + MER57-int LTR ERV1 2277 6180 -1357 1721 209 61 25 chr12 69377066 69377507 -74904982 + LTR2B LTR ERV1 34 490 0 469 255 14 64 chr12 69377540 69377681 -74904808 + MER57-int LTR ERV1 6816 6949 -588 180 256 0 0 chr12 69377688 69377731 -74904758 + L2 LINE L2 1199 1241 -2073 252 207 49 85 chr12 69377753 69377835 -74904654 + MER57-int LTR ERV1 7022 7100 -437 1044 238 110 48 chr12 69377873 69378273 -74904216 + MER57B LTR ERV1 10 434 0 326 293 0 21 chr12 69378294 69378434 -74904055 - MER117 DNA MER1_type -58 139 3 190 108 81 27 chr12 69378669 69378706 -74903783 + L2 LINE L2 3217 3255 -17 3082 92 18 0 chr12 69380574 69381030 -74901459 + L1PA10 LINE L1 5626 6089 -79 1981 182 61 23 chr12 69381034 69381474 -74901015 + LTR2B LTR ERV1 34 490 0 685 142 0 18 chr12 69381474 69381587 -74900902 + L1PA11 LINE L1 6064 6174 0 379 374 7 0 chr12 69381821 69381968 -74900521 + L2 LINE L2 2576 2723 -591 638 227 81 15 chr12 69381969 69382167 -74900322 - LTR16B LTR ERVL -14 450 240 2215 105 3 7 chr12 69382288 69382583 -74899906 - AluSx SINE Alu -8 304 11 701 206 29 0 chr12 69382675 69382811 -74899678 + MER5B DNA MER1_type 4 143 -35 795 258 22 0 chr12 69383528 69383710 -74898779 + MIR SINE MIR 75 260 -2 389 219 97 9 chr12 69383774 69383888 -74898601 + MER3 DNA MER1_type 86 209 0 230 260 0 0 chr12 69383845 69383895 -74898594 - MER3 DNA MER1_type -119 90 41 * 418 285 8 16 chr12 69384175 69384298 -74898191 + L2 LINE L2 3192 3313 0 545 249 183 10 chr12 69384380 69384577 -74897912 - MIR SINE MIR -4 258 28 285 260 160 20 chr12 69386439 69386539 -74895950 - MIR3 SINE MIR -12 196 83 735 286 87 17 chr12 69386539 69387018 -74895471 + L1MCa LINE L1 25 518 -5905 1046 245 147 66 chr12 69387174 69387409 -74895080 + L1MCa LINE L1 850 1064 -5587 3375 72 5 19 chr12 69387409 69387841 -74894648 - SVA Other Other -8 1378 953 1046 245 147 66 chr12 69387841 69388458 -74894031 + L1MCa LINE L1 1064 1761 -4890 3702 259 44 24 chr12 69388486 69389297 -74893192 + L2 LINE L2 1953 2747 -566 2012 159 39 23 chr12 69389297 69389681 -74892808 + MLT1B LTR MaLR 1 390 0 3702 259 44 24 chr12 69389681 69389976 -74892513 + L2 LINE L2 2747 3080 -233 2133 121 7 0 chr12 69389976 69390274 -74892215 + AluSc SINE Alu 1 300 -9 3702 259 44 24 chr12 69390274 69390380 -74892109 + L2 LINE L2 3080 3182 -131 643 286 16 5 chr12 69390380 69390572 -74891917 + LTR33 LTR ERVL 1 194 -327 1928 41 29 0 chr12 69390726 69390971 -74891518 - L1PA4 LINE L1 -1 6154 5903 327 230 86 72 chr12 69391378 69391517 -74890972 + L2 LINE L2 3171 3311 -2 625 162 19 91 chr12 69392627 69392781 -74889708 + L2 LINE L2 3171 3313 0 1323 261 32 30 chr12 69392897 69393330 -74889159 + MLT1H LTR MaLR 8 441 -108 1536 255 131 26 chr12 69393530 69394263 -74888226 + HAL1 LINE L1 359 1168 -1339 382 284 57 21 chr12 69394355 69394549 -74887940 - L1ME LINE L1 -385 5736 5536 181 189 54 0 chr12 69395207 69395244 -74887245 - MIR SINE MIR -72 136 98 292 328 52 0 chr12 69395626 69395760 -74886729 + L2 LINE L2 1812 1952 -1362 187 217 0 24 chr12 69395940 69396023 -74886466 + CT-rich Low_complexity Low_complexity 4 84 0 239 414 17 0 chr12 69396384 69396500 -74885989 + MIR SINE MIR 28 145 -117 611 253 127 44 chr12 69396530 69396759 -74885730 + MLT1I LTR MaLR 162 409 0 323 302 151 67 chr12 69396759 69397209 -74885280 - L2 LINE L2 -1549 1765 1278 409 339 55 0 chr12 69397223 69397350 -74885139 + L2 LINE L2 3136 3269 -3 226 250 0 21 chr12 69400376 69400424 -74882065 - MIR SINE MIR -190 72 26 22 80 0 0 chr12 69400699 69400749 -74881740 + AT_rich Low_complexity Low_complexity 1 50 0 1009 249 133 52 chr12 69401133 69401554 -74880935 - L2 LINE L2 -2 3311 2857 21 0 0 0 chr12 69401714 69401735 -74880754 + AT_rich Low_complexity Low_complexity 1 21 0 361 245 85 85 chr12 69404349 69404537 -74877952 + MIR3 SINE MIR 14 201 -7 716 213 59 54 chr12 69405692 69405913 -74876576 + L1ME3A LINE L1 5942 6163 -7 273 303 53 0 chr12 69405948 69406024 -74876465 + L2 LINE L2 3203 3282 -31 1249 196 7 63 chr12 69406025 69406152 -74876337 - MLT1A1 LTR MaLR -96 269 136 2257 115 0 3 chr12 69406152 69406448 -74876041 - AluSq SINE Alu -18 295 1 1249 196 7 63 chr12 69406448 69406605 -74875884 - MLT1A1 LTR MaLR -229 136 1 2135 242 68 6 chr12 69407188 69408058 -74874431 - L1MC4 LINE L1 -141 7901 6819 375 78 0 0 chr12 69408058 69408109 -74874380 + (CA)n Simple_repeat Simple_repeat 1 51 0 427 344 6 19 chr12 69409566 69409726 -74872763 + L2 LINE L2 3115 3272 0 246 233 0 0 chr12 69409906 69409949 -74872540 + MIR SINE MIR 12 54 -208 353 293 10 0 chr12 69409954 69410053 -74872436 + MIR SINE MIR 161 260 -2 723 233 34 17 chr12 69410221 69410397 -74872092 + MLT1J2 LTR MaLR 269 447 -3 213 283 0 0 chr12 69410461 69410521 -74871968 + (TCTCTG)n Simple_repeat Simple_repeat 4 63 0 184 250 0 21 chr12 69411370 69411418 -74871071 + L2 LINE L2 3267 3313 0 372 213 118 7 chr12 69412409 69412545 -74869944 - L1ME4a LINE L1 -1 6120 5970 286 233 0 17 chr12 69412545 69412665 -74869824 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 347 258 10 10 chr12 69412691 69412788 -74869701 - L1ME4a LINE L1 -234 5887 5791 274 196 0 0 chr12 69412883 69412939 -74869550 - L2 LINE L2 -557 2757 2702 259 258 0 0 chr12 69413002 69413068 -74869421 - L2 LINE L2 -556 2758 2693 * 520 250 141 32 chr12 69413063 69413351 -74869138 + L2 LINE L2 2750 3065 -248 1850 168 17 0 chr12 69413391 69413689 -74868800 - AluJo SINE Alu -9 303 1 728 166 55 14 chr12 69413699 69413844 -74868645 - L1MA8 LINE L1 -113 6178 6028 5661 110 29 26 chr12 69413889 69414799 -74867690 - L1PA16 LINE L1 -1 6165 5254 10985 208 33 6 chr12 69414800 69415427 -74867062 - L1 LINE L1 -1092 5054 4445 261 0 0 0 chr12 69415427 69415456 -74867033 + (TG)n Simple_repeat Simple_repeat 1 29 0 10985 208 33 6 chr12 69415456 69417290 -74865199 - L1 LINE L1 -1701 4445 2527 40614 82 7 2 chr12 69417293 69423406 -74859083 - L1PA5 LINE L1 -11 6143 4 6252 216 11 15 chr12 69423407 69425001 -74857488 - L1PA15-16 LINE L1 -3596 3988 2393 324 327 9 59 chr12 69425009 69425080 -74857409 - L1PA15-16 LINE L1 -5146 2435 2362 2249 111 7 0 chr12 69425080 69425378 -74857111 - AluSx SINE Alu -12 300 1 324 327 9 59 chr12 69425378 69425526 -74856963 - L1PA15-16 LINE L1 -5219 2362 2227 237 206 0 87 chr12 69426238 69426330 -74856159 - L1PA15-16 LINE L1 -5276 2298 2215 342 316 32 27 chr12 69426396 69426583 -74855906 - L1PA15-16 LINE L1 -6202 1372 1185 1209 240 67 28 chr12 69426699 69426962 -74855527 - L1ME LINE L1 -388 5774 5490 2045 130 0 7 chr12 69426962 69427261 -74855228 - AluSx SINE Alu -15 297 1 1209 240 67 28 chr12 69427261 69427384 -74855105 - L1ME LINE L1 -672 5490 5373 2018 141 3 0 chr12 69427387 69427691 -74854798 - AluSx SINE Alu -2 310 6 184 250 109 16 chr12 69428242 69428306 -74854183 - L2 LINE L2 -987 2327 2258 3317 172 15 54 chr12 69429287 69429950 -74852539 - L1MB7 LINE L1 -5 6179 5543 465 228 117 14 chr12 69430070 69430215 -74852274 + MLT1D LTR MaLR 1 160 -345 611 197 72 133 chr12 69430252 69430531 -74851958 + MER63 DNA MER1_type 795 1056 -6 469 236 14 14 chr12 69431640 69431780 -74850709 + MER63 DNA MER1_type 916 1055 -6 374 311 40 0 chr12 69431835 69431986 -74850503 - MER103 DNA DNA -7 159 3 2111 147 7 0 chr12 69432409 69432742 -74849747 - AluSg SINE Alu 0 335 1 984 199 11 6 chr12 69433869 69434045 -74848444 + MER45A DNA AcHobo 1 177 -1 229 47 47 23 chr12 69434238 69434281 -74848208 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 1840 141 60 9 chr12 69435066 69435375 -74847114 + L1MA4A LINE L1 5959 6286 -17 237 98 0 0 chr12 69435375 69435416 -74847073 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 386 211 232 17 chr12 69436867 69437005 -74845484 + MIR SINE MIR 20 175 -65 1946 144 54 35 chr12 69440139 69440507 -74841982 + THE1C LTR MaLR 1 375 0 27 29 0 0 chr12 69440650 69440684 -74841805 + AT_rich Low_complexity Low_complexity 1 34 0 356 202 67 19 chr12 69440688 69440792 -74841697 - Charlie7 DNA MER1_type -2503 109 1 925 158 0 0 chr12 69440897 69441030 -74841459 - FLAM_A SINE Alu 0 133 1 340 259 130 8 chr12 69441156 69441287 -74841202 + L2 LINE L2 3163 3309 -4 1935 125 0 17 chr12 69442310 69442620 -74839869 + AluSg SINE Alu 1 305 0 216 0 0 0 chr12 69443188 69443212 -74839277 + (T)n Simple_repeat Simple_repeat 1 24 0 863 135 8 8 chr12 69443212 69443345 -74839144 - AluSq/x SINE Alu -179 133 1 2077 138 0 0 chr12 69443465 69443769 -74838720 - AluSx SINE Alu -8 304 1 307 261 112 30 chr12 69443830 69443964 -74838525 - LTR16C LTR ERVL -1 490 346 198 219 27 96 chr12 69444174 69444247 -74838242 - MIR3 SINE MIR -2 206 139 2145 132 0 7 chr12 69445587 69445891 -74836598 + AluSx SINE Alu 1 302 -10 266 208 108 75 chr12 69446111 69446231 -74836258 + L1ME4a LINE L1 5992 6115 -6 2112 139 0 0 chr12 69446468 69446769 -74835720 - AluSq SINE Alu -10 303 3 3265 173 44 16 chr12 69446851 69447526 -74834963 + L1MB7 LINE L1 5472 6165 -19 247 279 100 0 chr12 69448375 69448455 -74834034 - MIR SINE MIR -93 115 36 662 240 125 56 chr12 69448492 69448820 -74833669 - L1ME3A LINE L1 0 6170 5808 352 242 44 11 chr12 69449180 69449271 -74833218 + MIR3 SINE MIR 88 181 -27 1215 183 0 25 chr12 69450518 69450753 -74831736 - AluJo SINE Alu -1 311 83 21 0 0 0 chr12 69451404 69451425 -74831064 + AT_rich Low_complexity Low_complexity 1 21 0 210 318 37 19 chr12 69452057 69452164 -74830325 - MIR SINE MIR -115 147 39 203 286 129 36 chr12 69452188 69452328 -74830161 + MIR SINE MIR 84 236 -26 627 287 102 47 chr12 69452894 69453358 -74829131 + MLT1J2 LTR MaLR 1 450 0 23 78 0 0 chr12 69453911 69453962 -74828527 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr12 69454087 69454109 -74828380 + AT_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chr12 69455468 69455503 -74826986 + (TG)n Simple_repeat Simple_repeat 2 36 0 1943 130 14 0 chr12 69457783 69458076 -74824413 + AluSx SINE Alu 14 310 -2 275 415 72 35 chr12 69458958 69459360 -74823129 + L2 LINE L2 2839 3255 -17 443 33 0 0 chr12 69460998 69461059 -74821430 - L1PA2 LINE L1 0 6155 6095 180 0 0 0 chr12 69461288 69461308 -74821181 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2111 127 10 3 chr12 69461354 69461662 -74820827 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr12 69462458 69462479 -74820010 + AT_rich Low_complexity Low_complexity 1 21 0 1711 172 6 31 chr12 69462831 69463151 -74819338 - AluJo SINE Alu 0 312 1 425 247 22 94 chr12 69463192 69463415 -74819074 + L1ME4a LINE L1 5484 5690 -431 267 314 108 0 chr12 69463418 69463520 -74818969 - L2 LINE L2 -3 3310 3198 426 256 130 26 chr12 69463555 69463824 -74818665 + L1ME4a LINE L1 5719 6015 -106 385 267 8 67 chr12 69463831 69463951 -74818538 + MIR SINE MIR 33 145 -63 2165 124 0 0 chr12 69464892 69465191 -74817298 - AluSx SINE Alu -10 302 4 2383 99 0 0 chr12 69465698 69466002 -74816487 + AluSx SINE Alu 1 304 -8 701 275 75 4 chr12 69466003 69466283 -74816206 + L1M4 LINE L1 3294 3593 -2553 708 128 0 0 chr12 69466358 69466460 -74816029 + AluSg/x SINE Alu 195 296 -13 22 56 0 0 chr12 69466597 69466633 -74815856 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr12 69466686 69466707 -74815782 + AT_rich Low_complexity Low_complexity 1 21 0 34 72 0 0 chr12 69467729 69467798 -74814691 + AT_rich Low_complexity Low_complexity 1 69 0 189 107 0 0 chr12 69468677 69468705 -74813784 + (A)n Simple_repeat Simple_repeat 1 28 0 597 120 0 0 chr12 69470538 69470630 -74811859 + (TTTTC)n Simple_repeat Simple_repeat 1 92 0 792 192 51 0 chr12 69470630 69470786 -74811703 - FRAM SINE Alu -2 164 1 238 315 83 55 chr12 69471310 69471491 -74810998 + L2 LINE L2 3128 3313 0 1824 102 157 6 chr12 69471968 69472281 -74810208 - MER46B DNA MER2_type 0 236 2 2000 133 3 29 chr12 69473644 69473959 -74808530 + AluSg SINE Alu 1 307 -3 323 358 102 14 chr12 69475272 69475565 -74806924 + L2 LINE L2 1780 2098 -1216 241 269 43 43 chr12 69475640 69475733 -74806756 + Charlie4 DNA MER1_type 1869 1961 0 425 279 96 65 chr12 69475736 69476194 -74806295 + L2 LINE L2 2113 2584 -730 258 219 96 27 chr12 69477049 69477122 -74805367 + MIR SINE MIR 33 110 -152 589 328 62 52 chr12 69477124 69477511 -74804978 - L2 LINE L2 -3 3269 2879 401 230 80 0 chr12 69477506 69477606 -74804883 + MIR SINE MIR 154 261 -1 * 573 227 49 12 chr12 69477892 69478055 -74804434 + L1MC5 LINE L1 7336 7504 -457 211 56 93 0 chr12 69478098 69478152 -74804337 + (TA)n Simple_repeat Simple_repeat 2 60 0 664 234 14 77 chr12 69478612 69478821 -74803668 - L2 LINE L2 0 3313 3118 2823 69 10 4 chr12 69478821 69479202 -74803287 + L1PA7 LINE L1 5750 6129 -25 345 300 0 0 chr12 69479208 69479298 -74803191 - L1MC4 LINE L1 -1339 6703 6614 336 244 47 0 chr12 69479224 69479310 -74803179 + L1MC4 LINE L1 6614 6703 -1339 * 602 295 62 25 chr12 69479324 69479568 -74802921 - L2 LINE L2 -239 3074 2822 306 0 0 0 chr12 69481688 69481722 -74800767 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1712 159 0 31 chr12 69481723 69482012 -74800477 - AluJo SINE Alu -32 280 1 885 65 0 0 chr12 69482519 69482626 -74799863 + U6 snRNA snRNA 1 107 0 2824 80 14 0 chr12 69482626 69483104 -74799385 + L1P3 LINE L1 4979 5460 -712 193 281 18 18 chr12 69483330 69483387 -74799102 + L3 LINE CR1 320 376 -1201 454 263 109 19 chr12 69484899 69485055 -74797434 + MIR3 SINE MIR 33 202 -6 26 30 0 0 chr12 69486038 69486071 -74796418 + AT_rich Low_complexity Low_complexity 1 33 0 893 129 8 0 chr12 69486980 69487104 -74795385 + FLAM_C SINE Alu 1 125 -18 212 195 117 26 chr12 69487976 69488053 -74794436 - MIR SINE MIR -85 123 40 1311 180 36 104 chr12 69488446 69488890 -74793599 - MLT2D LTR ERVL 0 414 1 271 227 93 13 chr12 69488918 69488993 -74793496 + MER96 DNA MER1_type? 1 81 -94 207 262 168 63 chr12 69539313 69539504 -74742985 - L2 LINE L2 -427 2887 2677 276 312 160 21 chr12 69539716 69539953 -74742536 + L2 LINE L2 2230 2499 -815 2148 116 36 7 chr12 69540623 69540926 -74741563 + AluSx SINE Alu 1 312 0 668 212 28 47 chr12 69540926 69541138 -74741351 + L1M4 LINE L1 3840 4047 -2099 390 309 80 6 chr12 69542788 69542963 -74739526 + MER5A DNA MER1_type 2 189 0 1996 138 13 10 chr12 69543905 69544216 -74738273 + AluJb SINE Alu 1 312 0 185 81 0 54 chr12 69544219 69544256 -74738233 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 435 19 0 0 chr12 69544786 69544838 -74737651 + (TG)n Simple_repeat Simple_repeat 1 52 0 884 181 16 21 chr12 69545283 69545471 -74737018 + MER53 DNA DNA 1 187 -2 184 340 75 19 chr12 69545508 69545614 -74736875 + L2 LINE L2 2567 2678 -636 227 239 15 0 chr12 69545636 69545703 -74736786 + CT-rich Low_complexity Low_complexity 1 68 0 1334 189 49 25 chr12 69545703 69546165 -74736324 - AluJb SINE Alu 0 469 1 1032 258 112 57 chr12 69546298 69546811 -74735678 + L2 LINE L2 2473 3038 -275 239 240 0 20 chr12 69546906 69546956 -74735533 + L2 LINE L2 3224 3272 0 32 0 0 0 chr12 69547102 69547134 -74735355 + AT_rich Low_complexity Low_complexity 1 32 0 259 349 72 20 chr12 69547441 69547593 -74734896 - MIR SINE MIR -90 172 13 589 232 135 11 chr12 69549217 69549402 -74733087 - MER63A DNA MER1_type -2 208 1 520 248 82 18 chr12 69549876 69550061 -74732428 + MIR SINE MIR 64 259 -3 326 187 11 0 chr12 69551766 69551857 -74730632 + GA-rich Low_complexity Low_complexity 2 93 0 315 380 44 6 chr12 69551862 69552020 -74730469 - L1M4 LINE L1 -2910 3236 3073 213 139 0 0 chr12 69552066 69552109 -74730380 + (T)n Simple_repeat Simple_repeat 1 43 0 241 250 0 0 chr12 69552133 69552189 -74730300 + T-rich Low_complexity Low_complexity 1 56 0 189 167 119 0 chr12 69553038 69553080 -74729409 - L2 LINE L2 -4 3309 3263 595 273 38 98 chr12 69553196 69553320 -74729169 + L2 LINE L2 2683 2813 -500 506 258 113 13 chr12 69553320 69553479 -74729010 + MER5B DNA MER1_type 3 177 -1 595 273 38 98 chr12 69553479 69553836 -74728653 + L2 LINE L2 2813 3136 -177 1623 176 25 32 chr12 69554231 69554515 -74727974 + AluJo SINE Alu 1 282 -30 272 260 123 0 chr12 69554543 69554616 -74727873 - MIR SINE MIR -141 121 40 793 212 195 53 chr12 69554880 69555106 -74727383 - MIR SINE MIR 0 262 5 258 143 48 0 chr12 69555150 69555192 -74727297 - MIR SINE MIR -18 244 201 1524 177 36 50 chr12 69555196 69555558 -74726931 - MLT1A1 LTR MaLR -1 364 8 410 304 43 7 chr12 69555568 69555706 -74726783 - MIR SINE MIR -71 191 49 2197 163 63 42 chr12 69556468 69556941 -74725548 + MLT1D LTR MaLR 23 505 0 507 272 72 28 chr12 69557146 69557513 -74724976 + L1ME LINE L1 5270 5645 -476 521 263 98 40 chr12 69557524 69557748 -74724741 + LTR33 LTR ERVL 14 250 -271 471 253 247 0 chr12 69557751 69557901 -74724588 - MER5A DNA MER1_type 0 189 3 635 249 61 46 chr12 69557907 69558168 -74724321 + LTR33 LTR ERVL 254 518 -3 441 246 0 16 chr12 69558169 69558295 -74724194 + L1ME LINE L1 5639 5762 -359 321 302 94 13 chr12 69561268 69561427 -74721062 + L1M4 LINE L1 2137 2308 -3838 550 311 76 37 chr12 69561522 69561904 -74720585 - MLT1J LTR MaLR -114 397 1 2321 100 7 0 chr12 69562347 69562657 -74719832 - AluSx SINE Alu 0 312 1 413 220 13 0 chr12 69562684 69562788 -74719701 - L1P4 LINE L1 -531 5634 5529 191 35 0 35 chr12 69562812 69562841 -74719648 + (TA)n Simple_repeat Simple_repeat 2 29 0 2516 224 48 5 chr12 69562846 69563510 -74718979 - L1M4 LINE L1 -900 5246 4554 354 303 136 51 chr12 69563547 69563960 -74718529 - L1M4 LINE L1 -3292 2854 2407 265 246 16 0 chr12 69564239 69564300 -74718189 + MIR SINE MIR 191 252 -10 2521 147 10 7 chr12 69565479 69566167 -74716322 + L1MA9 LINE L1 4890 5583 -729 2598 163 12 21 chr12 69566256 69566773 -74715716 + L1MA9 LINE L1 5800 6311 -1 346 258 86 55 chr12 69567894 69568067 -74714422 - MIR SINE MIR -56 152 17 353 99 2 0 chr12 69568114 69568171 -74714318 + Alu SINE Alu 1 51 -251 2699 219 83 11 chr12 69568291 69569234 -74713255 - L1ME1 LINE L1 -5 6161 5157 231 359 11 0 chr12 69569524 69569616 -74712873 - MIR SINE MIR -2 260 168 2629 112 41 17 chr12 69569631 69569670 -74712819 - MSTA LTR MaLR 0 428 391 1804 166 36 7 chr12 69569670 69569972 -74712517 + AluSx SINE Alu 1 311 -1 2629 112 41 17 chr12 69569972 69570350 -74712139 - MSTA LTR MaLR -37 391 1 1021 221 44 25 chr12 69570475 69570679 -74711810 + AluJb SINE Alu 2 209 -103 191 35 0 35 chr12 69570682 69570711 -74711778 + (TTTTC)n Simple_repeat Simple_repeat 1 28 0 185 0 40 0 chr12 69571055 69571080 -74711409 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 264 223 58 48 chr12 69571211 69571314 -74711175 + LTR33A LTR ERVL 418 521 -2 801 319 111 6 chr12 69571534 69571648 -74710841 - L3 LINE CR1 -387 1190 1089 1766 139 6 63 chr12 69571648 69571964 -74710525 - AluJb SINE Alu -14 298 1 801 319 111 6 chr12 69571964 69572181 -74710308 - L3 LINE CR1 -488 1089 824 2232 102 3 0 chr12 69572405 69572699 -74709790 - AluSq SINE Alu -18 295 1 346 258 86 55 chr12 69572747 69572920 -74709569 + MIR SINE MIR 17 191 -56 506 361 11 0 chr12 69573033 69573213 -74709276 + MIR3 SINE MIR 4 185 -23 26 0 0 0 chr12 69573801 69573827 -74708662 + AT_rich Low_complexity Low_complexity 1 26 0 2349 263 94 32 chr12 69573978 69575209 -74707280 + L2 LINE L2 1991 3313 0 269 159 16 0 chr12 69575431 69575494 -74706995 + GA-rich Low_complexity Low_complexity 1 64 0 575 230 215 0 chr12 69575843 69576034 -74706455 + L1MEc LINE L1 36 267 -6129 262 292 80 8 chr12 69576921 69577044 -74705445 - MIR3 SINE MIR -11 197 60 199 304 0 0 chr12 69577224 69577270 -74705219 - MIR SINE MIR -133 75 30 1973 69 38 4 chr12 69577676 69577937 -74704552 + AluY SINE Alu 1 270 -41 362 328 90 15 chr12 69578200 69578401 -74704088 + MIR SINE MIR 4 219 -43 1681 167 39 26 chr12 69578461 69578767 -74703722 - AluJo SINE Alu -2 310 1 26 0 0 0 chr12 69578767 69578793 -74703696 + AT_rich Low_complexity Low_complexity 1 26 0 764 278 23 53 chr12 69578970 69579366 -74703123 - MER93a LTR ERV1 0 402 19 1931 100 50 0 chr12 69579366 69579645 -74702844 - AluSx SINE Alu -11 301 9 1203 172 8 8 chr12 69579705 69579943 -74702546 + L1M4 LINE L1 5579 5816 -358 410 147 0 0 chr12 69579943 69580011 -74702478 + Alu SINE Alu 235 302 -10 1262 117 22 0 chr12 69580919 69581098 -74701391 - AluSg/x SINE Alu -14 298 116 2339 79 0 9 chr12 69581101 69581416 -74701073 - AluSx SINE Alu 0 312 1 475 286 46 34 chr12 69581575 69581750 -74700739 - MIR SINE MIR -2 260 84 209 329 27 14 chr12 69581891 69581964 -74700525 - MIR SINE MIR -184 78 5 2463 27 9 64 chr12 69582171 69582500 -74699989 - AluSq SINE Alu -2 311 1 250 183 83 0 chr12 69582681 69582741 -74699748 + MIR SINE MIR 89 153 -55 257 165 191 128 chr12 69582854 69583042 -74699447 - L2 LINE L2 -1 3312 3113 203 283 0 0 chr12 69584036 69584096 -74698393 + (CGG)n Simple_repeat Simple_repeat 1 60 0 25 31 0 0 chr12 69584185 69584217 -74698272 + GC_rich Low_complexity Low_complexity 1 32 0 202 276 0 0 chr12 69584475 69584533 -74697956 + GA-rich Low_complexity Low_complexity 1 58 0 222 283 22 54 chr12 69585943 69586035 -74696454 + MIR SINE MIR 12 100 -162 248 279 249 24 chr12 69586221 69586386 -74696103 - L2 LINE L2 -276 3037 2836 1620 92 0 18 chr12 69586948 69587166 -74695323 - AluSc SINE Alu -5 304 91 316 344 106 0 chr12 69587188 69587339 -74695150 - MIR SINE MIR -48 214 48 267 313 173 23 chr12 69587678 69587815 -74694674 + MIR SINE MIR 20 173 -41 3270 106 24 3 chr12 69588023 69588580 -74693909 - L1M4 LINE L1 -71 6103 5494 2151 109 52 30 chr12 69588714 69589081 -74693408 - THE1C LTR MaLR 0 375 1 240 336 102 16 chr12 69590163 69590291 -74692198 + L2 LINE L2 3126 3264 -8 440 280 49 80 chr12 69590738 69590963 -74691526 + MIR SINE MIR 31 248 -14 320 322 41 25 chr12 69592875 69592996 -74689493 - L2 LINE L2 -11 3261 3139 23 33 0 0 chr12 69593296 69593326 -74689163 + AT_rich Low_complexity Low_complexity 1 30 0 679 317 4 49 chr12 69594243 69594508 -74687981 - MIR SINE MIR 0 262 10 21 36 0 0 chr12 69595269 69595297 -74687192 + AT_rich Low_complexity Low_complexity 1 28 0 2253 82 65 34 chr12 69595760 69596113 -74686376 - THE1B LTR MaLR 0 364 1 1397 55 0 0 chr12 69596182 69596347 -74686142 + AluY SINE Alu 137 301 -10 240 122 0 102 chr12 69596824 69596873 -74685616 + Alu SINE Alu 231 274 -28 261 0 0 0 chr12 69596878 69596907 -74685582 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 1840 153 7 7 chr12 69597008 69597315 -74685174 - AluJb SINE Alu 0 307 1 550 322 75 0 chr12 69598689 69598835 -74683654 - MER91A DNA MER1_type -12 184 28 643 228 44 13 chr12 69599064 69599222 -74683267 + MIR SINE MIR 73 235 -27 276 346 75 0 chr12 69599421 69599528 -74682961 - MIR3 SINE MIR -5 203 89 552 208 123 0 chr12 69599884 69600014 -74682475 + MIR SINE MIR 21 166 -96 * 1326 269 52 15 chr12 69600013 69600474 -74682015 - L2 LINE L2 0 3313 2836 186 311 89 42 chr12 69600757 69600947 -74681542 + L2 LINE L2 2838 3036 -236 423 0 0 0 chr12 69601742 69601789 -74680700 + (CA)n Simple_repeat Simple_repeat 1 47 0 180 333 67 0 chr12 69602445 69602520 -74679969 + L2 LINE L2 3150 3229 -43 189 0 0 0 chr12 69604615 69604636 -74677853 + (A)n Simple_repeat Simple_repeat 1 21 0 3274 117 61 22 chr12 69605639 69606095 -74676394 + MER1A DNA MER1_type 1 480 -2220 2540 75 0 0 chr12 69606095 69606402 -74676087 + AluSg SINE Alu 3 309 -1 3274 117 61 22 chr12 69606402 69606451 -74676038 + MER1A DNA MER1_type 480 526 -1 273 312 142 34 chr12 69606534 69606858 -74675631 - L1MC/D LINE L1 -2036 5772 5414 3368 152 0 4 chr12 69606917 69607444 -74675045 - MER1A DNA MER1_type -1 526 2 30 27 0 0 chr12 69607829 69607866 -74674623 + AT_rich Low_complexity Low_complexity 1 37 0 290 115 19 0 chr12 69608279 69608331 -74674158 + GA-rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr12 69611044 69611070 -74671419 + GC_rich Low_complexity Low_complexity 1 26 0 380 71 18 0 chr12 69611262 69611318 -74671171 + (ATG)n Simple_repeat Simple_repeat 3 59 0 2272 73 3 0 chr12 69611710 69611997 -74670492 + AluSx SINE Alu 1 288 -24 34 0 0 0 chr12 69611997 69612031 -74670458 + AT_rich Low_complexity Low_complexity 1 34 0 180 0 0 0 chr12 69612206 69612226 -74670263 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 658 243 63 39 chr12 69612584 69612790 -74669699 - MIR SINE MIR -50 212 2 251 277 129 20 chr12 69613772 69613873 -74668616 - L2 LINE L2 0 3313 3202 502 348 49 53 chr12 69614013 69614481 -74668008 - L2 LINE L2 0 3272 2807 245 284 0 0 chr12 69614528 69614595 -74667894 + MLT1F1 LTR MaLR 44 110 -457 2331 124 67 5 chr12 69614596 69614998 -74667491 + L1MC3 LINE L1 7175 7601 -184 882 144 98 6 chr12 69614999 69615173 -74667316 + L1MC2 LINE L1 6155 6344 0 507 252 112 56 chr12 69615194 69615444 -74667045 + MER102a DNA MER1_type 59 322 -8 239 207 0 17 chr12 69616468 69616526 -74665963 - L1MA10 LINE L1 -95 6239 6183 * 241 241 0 24 chr12 69616516 69616599 -74665890 + L1MA10 LINE L1 6254 6334 0 1149 232 96 7 chr12 69616625 69617124 -74665365 + L1ME3A LINE L1 5123 5672 -498 234 273 0 0 chr12 69617125 69617213 -74665276 + L1MC4 LINE L1 6615 6702 -1340 222 150 0 0 chr12 69617226 69617266 -74665223 + (TA)n Simple_repeat Simple_repeat 2 41 0 620 234 76 0 chr12 69617266 69617424 -74665065 + L1ME3A LINE L1 5659 5828 -342 318 125 0 18 chr12 69617430 69617486 -74665003 - MADE1 DNA Mariner -25 55 1 1216 240 28 31 chr12 69617491 69617812 -74664677 + L1ME3A LINE L1 5842 6161 -9 1930 146 13 10 chr12 69617940 69618249 -74664240 + AluJo SINE Alu 1 310 -2 25 31 0 0 chr12 69618505 69618537 -74663952 + AT_rich Low_complexity Low_complexity 1 32 0 441 291 60 50 chr12 69618538 69618737 -74663752 + L1ME1 LINE L1 5468 5668 -2140 380 260 0 8 chr12 69619292 69619415 -74663074 + (TA)n Simple_repeat Simple_repeat 1 122 0 296 156 61 73 chr12 69619610 69619769 -74662720 + L1ME LINE L1 5313 5449 -672 347 144 14 3 chr12 69619992 69620058 -74662431 + L1PA16 LINE L1 6093 6161 -4 766 241 105 19 chr12 69620547 69620804 -74661685 + MER20B DNA MER1_type 1 283 -39 755 141 70 0 chr12 69620804 69620932 -74661557 - AluSg/x SINE Alu -20 292 156 331 254 66 25 chr12 69621193 69621390 -74661099 + MER20B DNA MER1_type 558 762 -21 777 239 38 60 chr12 69621393 69621734 -74660755 + L1ME1 LINE L1 5891 6148 -18 267 31 0 0 chr12 69622098 69622130 -74660359 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 858 156 11 6 chr12 69623182 69623361 -74659128 + GA-rich Low_complexity Low_complexity 1 180 0 963 157 8 2 chr12 69623382 69623701 -74658788 + GA-rich Low_complexity Low_complexity 1 499 0 498 351 13 23 chr12 69623701 69624086 -74658403 + L1MEc LINE L1 358 738 -5658 3608 254 87 17 chr12 69625065 69625206 -74657283 + L1MEc LINE L1 814 944 -5452 2291 110 0 0 chr12 69625206 69625505 -74656984 + AluSx SINE Alu 1 299 -13 3608 254 87 17 chr12 69625505 69626527 -74655962 + L1MEc LINE L1 944 1893 -4503 2003 121 14 3 chr12 69626527 69626817 -74655672 + AluSq SINE Alu 1 293 -20 3608 254 87 17 chr12 69626817 69626835 -74655654 + L1MEc LINE L1 1893 1908 -4488 561 15 0 0 chr12 69626835 69626901 -74655588 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 3608 254 87 17 chr12 69626901 69627267 -74655222 + L1MEc LINE L1 1908 2472 -3924 320 197 0 0 chr12 69627288 69627354 -74655135 + L1MC5 LINE L1 7837 7902 -59 1017 194 140 37 chr12 69628714 69629055 -74653434 - MER93b LTR ERV1 0 373 1 23 0 0 0 chr12 69629320 69629343 -74653146 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr12 69630241 69630279 -74652210 + AT_rich Low_complexity Low_complexity 1 38 0 1538 175 61 37 chr12 69630417 69630743 -74651746 + MER2 DNA MER2_type 6 339 -6 1375 133 12 16 chr12 69631498 69631741 -74650748 - L1P4 LINE L1 -389 5776 5522 1993 127 25 69 chr12 69631741 69632322 -74650167 + MER51A LTR ERV1 1 634 0 6287 211 85 22 chr12 69632322 69633845 -74648644 - L1MC/D LINE L1 -743 5403 3848 2044 101 29 49 chr12 69633845 69634151 -74648338 - AluSq SINE Alu -13 300 1 6287 211 85 22 chr12 69634151 69634669 -74647820 - L1MC/D LINE L1 -2298 3848 3364 21 0 0 0 chr12 69635696 69635717 -74646772 + AT_rich Low_complexity Low_complexity 1 21 0 423 214 22 0 chr12 69635718 69635807 -74646682 + MIR3 SINE MIR 112 202 -6 222 37 0 0 chr12 69636134 69636161 -74646328 + (TG)n Simple_repeat Simple_repeat 2 28 0 1108 266 81 41 chr12 69636168 69636692 -74645797 - L2 LINE L2 -5 3308 2757 910 319 196 24 chr12 69636891 69637955 -74644534 + L2 LINE L2 1797 3060 -212 246 254 149 18 chr12 69638191 69638305 -74644184 + MIR SINE MIR 122 250 -12 1812 162 0 23 chr12 69639434 69639742 -74642747 - AluJb SINE Alu -11 301 1 378 283 0 9 chr12 69640035 69640141 -74642348 + MIR SINE MIR 40 144 -118 686 188 220 0 chr12 69640198 69640384 -74642105 - MIR SINE MIR 0 262 36 22 94 0 0 chr12 69640642 69640706 -74641783 + AT_rich Low_complexity Low_complexity 1 64 0 1252 85 0 0 chr12 69641216 69641381 -74641108 + L1PA10 LINE L1 6003 6167 -1 2109 134 0 3 chr12 69641535 69641842 -74640647 - AluSx SINE Alu -6 306 1 33 43 0 0 chr12 69641937 69641984 -74640505 + AT_rich Low_complexity Low_complexity 1 47 0 23 78 0 0 chr12 69642039 69642090 -74640399 + AT_rich Low_complexity Low_complexity 1 51 0 210 37 0 0 chr12 69642580 69642607 -74639882 + (CA)n Simple_repeat Simple_repeat 2 28 0 223 163 41 41 chr12 69642921 69642970 -74639519 - L2 LINE L2 -3 3310 3262 466 256 16 62 chr12 69643777 69643906 -74638583 - MIR SINE MIR -131 131 9 181 270 127 0 chr12 69643980 69644043 -74638446 + MIR3 SINE MIR 112 182 -26 1186 181 123 17 chr12 69644836 69645128 -74637361 - MER33 DNA MER1_type 0 324 2 362 355 122 0 chr12 69645198 69645395 -74637094 - MIR SINE MIR -21 241 21 265 310 75 75 chr12 69646419 69646632 -74635857 - MIR SINE MIR -49 213 1 572 168 14 98 chr12 69646709 69646852 -74635637 - FLAM_A SINE Alu -2 131 1 22 0 0 0 chr12 69647234 69647256 -74635233 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr12 69647394 69647428 -74635061 + AT_rich Low_complexity Low_complexity 1 34 0 229 193 105 0 chr12 69647846 69647903 -74634586 - MIR SINE MIR -57 151 89 22 88 0 0 chr12 69648045 69648102 -74634387 + AT_rich Low_complexity Low_complexity 1 57 0 416 284 86 0 chr12 69649148 69649264 -74633225 - MIR SINE MIR -136 126 1 194 263 221 0 chr12 69649542 69649637 -74632852 + L2 LINE L2 3148 3263 -9 739 224 13 34 chr12 69650053 69650375 -74632114 - MER93b LTR ERV1 -10 392 1 760 257 17 56 chr12 69650377 69650665 -74631824 - MER65-int LTR ERV1 -394 7143 6867 1734 119 59 56 chr12 69650665 69651002 -74631487 - MER44D DNA MER2_type -1 608 1 455 163 0 35 chr12 69651158 69651244 -74631245 - MER65-int LTR ERV1 -945 3926 3844 302 203 152 13 chr12 69651301 69651380 -74631109 - LTR37A LTR ERV1 -333 93 4 2682 177 46 22 chr12 69651389 69651931 -74630558 - MER65-int LTR ERV1 -690 4246 3692 1934 139 79 47 chr12 69651934 69652338 -74630151 + MER4B LTR ERV1 1 417 -193 385 263 38 62 chr12 69652520 69652680 -74629809 + L3 LINE CR1 1175 1330 -247 1599 185 65 96 chr12 69652982 69653442 -74629047 - MSTB2 LTR MaLR -7 450 5 1723 108 131 0 chr12 69653957 69654225 -74628264 - AluSq SINE Alu -6 307 5 367 254 109 43 chr12 69654254 69654392 -74628097 + L3 LINE CR1 1429 1575 -2 1927 136 18 0 chr12 69654926 69655206 -74627283 + AluSx SINE Alu 3 287 -25 503 304 7 0 chr12 69655924 69656059 -74626430 + MIR SINE MIR 25 160 -102 939 201 32 26 chr12 69656062 69656251 -74626238 + AluJb SINE Alu 87 276 -36 338 277 0 27 chr12 69656272 69656384 -74626105 + MIR SINE MIR 154 262 0 1004 264 22 4 chr12 69656646 69656877 -74625612 + MIR SINE MIR 25 259 -3 1075 218 54 20 chr12 69657245 69657560 -74624929 + MER34C LTR ERV1 59 427 -158 799 211 102 20 chr12 69657718 69657976 -74624513 + MER31-int LTR ERV1 1029 1797 -3074 317 254 0 0 chr12 69657976 69658039 -74624450 - MER2 DNA MER2_type -1 344 282 284 204 0 0 chr12 69658014 69658063 -74624426 - MER8 DNA MER2_type -60 179 131 * 1095 98 0 18 chr12 69658068 69658231 -74624258 + LTR8A LTR ERV1 1 160 -567 242 159 109 36 chr12 69658231 69658369 -74624120 + (TTTAA)n Simple_repeat Simple_repeat 1 148 0 2361 157 76 60 chr12 69658384 69658951 -74623538 + LTR8A LTR ERV1 152 727 0 370 214 101 11 chr12 69658954 69659043 -74623446 - MER8 DNA MER2_type -113 126 30 519 186 8 8 chr12 69659061 69659179 -74623310 + MER31-int LTR ERV1 1266 1383 -3553 306 238 40 50 chr12 69659297 69659398 -74623091 + MER31-int LTR ERV1 2021 2120 -2751 4040 153 40 6 chr12 69659437 69659493 -74622996 + MER50 LTR ERV1 1 54 -680 387 0 0 0 chr12 69659493 69659536 -74622953 + (CA)n Simple_repeat Simple_repeat 2 44 0 4040 153 40 6 chr12 69659536 69660177 -74622312 + MER50 LTR ERV1 54 722 -12 970 203 55 46 chr12 69660214 69660539 -74621950 + MER31-int LTR ERV1 1538 1865 -3071 457 200 118 51 chr12 69660650 69660845 -74621644 + MER31-int LTR ERV1 2100 2307 -2629 3347 209 81 45 chr12 69661116 69661327 -74621162 + MER31-int LTR ERV1 2589 2791 -2145 1867 141 34 7 chr12 69661327 69661624 -74620865 - AluSx SINE Alu -7 305 1 3347 209 81 45 chr12 69661624 69662473 -74620016 + MER31-int LTR ERV1 2791 3687 -1249 3632 240 56 8 chr12 69662585 69662928 -74619561 - L1PA15-16 LINE L1 -2778 4071 3746 860 88 80 0 chr12 69662928 69663053 -74619436 + MER85 DNA T2_type 3 137 -2 3632 240 56 8 chr12 69663053 69663878 -74618611 - L1PA15-16 LINE L1 -3103 3746 2848 399 279 66 11 chr12 69663916 69664099 -74618390 - L1PA11 LINE L1 -2 6172 5980 21 36 0 0 chr12 69666312 69666340 -74616149 + AT_rich Low_complexity Low_complexity 1 28 0 277 321 18 46 chr12 69667133 69667207 -74615282 + MER5A DNA MER1_type 13 85 -104 1067 231 18 9 chr12 69667207 69667428 -74615061 - MER58A DNA MER1_type -1 223 1 277 321 18 46 chr12 69667428 69667462 -74615027 + MER5A DNA MER1_type 85 118 -71 814 229 6 24 chr12 69667885 69668055 -74614434 - AluJo SINE Alu -11 301 135 24 0 0 0 chr12 69668720 69668744 -74613745 + AT_rich Low_complexity Low_complexity 1 24 0 2150 97 3 10 chr12 69668855 69669153 -74613336 - AluSq SINE Alu -7 306 11 8561 187 153 61 chr12 69669634 69671467 -74611022 - L1MB1 LINE L1 -5 5987 4324 774 137 16 8 chr12 69671467 69671591 -74610898 - AluJo SINE Alu -187 125 1 8561 187 153 61 chr12 69671591 69671807 -74610682 - L1MB1 LINE L1 -1668 4324 4129 2136 115 3 10 chr12 69671807 69672112 -74610377 - AluSx SINE Alu -8 304 2 8561 187 153 61 chr12 69672112 69673373 -74609116 - L1MB1 LINE L1 -1863 4129 2985 1496 132 0 0 chr12 69673373 69673585 -74608904 - AluJo SINE Alu -8 304 93 8561 187 153 61 chr12 69673585 69674437 -74608052 - L1MB1 LINE L1 -3007 2985 1284 645 200 18 14 chr12 69674439 69674587 -74607902 + Tigger7 DNA MER2_type 2 132 -573 1877 235 103 31 chr12 69674598 69674879 -74607610 - L1MB1 LINE L1 -4518 1373 1114 185 0 0 39 chr12 69674879 69674905 -74607584 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1877 235 103 31 chr12 69674905 69675472 -74607017 - L1MB1 LINE L1 -4777 1114 559 2180 111 0 0 chr12 69675655 69675953 -74606536 - AluY SINE Alu -13 298 1 452 290 53 48 chr12 69675976 69676183 -74606306 - L1MB1 LINE L1 -5497 394 187 1038 262 82 15 chr12 69676237 69676565 -74605924 - L1MB1 LINE L1 -5541 350 1 244 221 59 29 chr12 69676605 69676673 -74605816 + L3 LINE CR1 434 503 -1074 350 317 118 16 chr12 69676744 69676930 -74605559 + MIR SINE MIR 45 249 -13 356 325 107 41 chr12 69676939 69677136 -74605353 + L3 LINE CR1 558 767 -810 1013 177 56 15 chr12 69677520 69677718 -74604771 + MER2 DNA MER2_type 7 212 -133 1181 82 88 6 chr12 69677735 69677917 -74604572 - MER30 DNA MER1_type -33 197 1 421 211 12 149 chr12 69677917 69678078 -74604411 + MER2 DNA MER2_type 207 345 0 2095 96 0 3 chr12 69678457 69678769 -74603720 - AluY SINE Alu 0 311 1 5325 139 68 38 chr12 69678776 69681056 -74601433 - L1MA5 LINE L1 -2 6298 3909 1196 173 124 67 chr12 69681476 69681759 -74600730 + AluJb SINE Alu 1 299 -3 30 77 0 0 chr12 69681871 69681936 -74600553 + AT_rich Low_complexity Low_complexity 1 65 0 347 214 39 29 chr12 69682102 69682205 -74600284 - L1ME LINE L1 -452 5669 5566 26 50 0 0 chr12 69682627 69682667 -74599822 + AT_rich Low_complexity Low_complexity 1 40 0 397 303 129 0 chr12 69683136 69683291 -74599198 - MIR SINE MIR -52 210 36 23 0 0 0 chr12 69683619 69683642 -74598847 + AT_rich Low_complexity Low_complexity 1 23 0 524 220 178 58 chr12 69684205 69684396 -74598093 + MER58C DNA MER1_type 2 215 0 22 0 0 0 chr12 69685499 69685521 -74596968 + AT_rich Low_complexity Low_complexity 1 22 0 1430 179 136 16 chr12 69685521 69685829 -74596660 - MER2 DNA MER2_type 0 345 1 1967 121 0 30 chr12 69686333 69686638 -74595851 + AluSx SINE Alu 1 296 -16 381 250 11 33 chr12 69686671 69686763 -74595726 + L2 LINE L2 3190 3279 -34 374 273 53 23 chr12 69686763 69686982 -74595507 + L1MC4a LINE L1 5691 5805 -316 23 33 0 0 chr12 69686984 69687014 -74595475 + AT_rich Low_complexity Low_complexity 1 30 0 2845 211 88 22 chr12 69687166 69688015 -74594474 - Charlie1 DNA MER1_type -98 2663 1759 1735 135 4 25 chr12 69688061 69688335 -74594154 + AluSx SINE Alu 1 268 -44 281 221 105 0 chr12 69688368 69688463 -74594026 + L1ME4a LINE L1 5990 6094 -27 31 96 0 0 chr12 69689187 69689281 -74593208 + AT_rich Low_complexity Low_complexity 1 94 0 1727 153 35 7 chr12 69689359 69689647 -74592842 + AluJo SINE Alu 12 307 -5 23 0 0 0 chr12 69689745 69689768 -74592721 + AT_rich Low_complexity Low_complexity 1 23 0 282 343 30 71 chr12 69690735 69690904 -74591585 - MER5B DNA MER1_type -7 171 10 25 75 0 0 chr12 69691475 69691528 -74590961 + AT_rich Low_complexity Low_complexity 1 53 0 889 112 0 42 chr12 69691971 69692114 -74590375 + L1PA10 LINE L1 6022 6158 -10 1104 311 138 53 chr12 69692202 69693399 -74589090 + L2 LINE L2 1939 3272 0 188 122 24 0 chr12 69694336 69694377 -74588112 + (CA)n Simple_repeat Simple_repeat 1 42 0 1892 146 0 10 chr12 69694740 69695028 -74587461 + AluJb SINE Alu 1 285 -27 2422 56 0 29 chr12 69695207 69695513 -74586976 - AluY SINE Alu -14 297 1 270 193 0 0 chr12 69697069 69697126 -74585363 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 27 0 0 0 chr12 69697997 69698024 -74584465 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr12 69698367 69698405 -74584084 + AT_rich Low_complexity Low_complexity 1 38 0 299 318 69 65 chr12 69698852 69699097 -74583392 - L2 LINE L2 -17 3255 3010 1341 186 28 28 chr12 69699987 69700278 -74582211 + AluJo SINE Alu 3 293 -19 1320 148 19 14 chr12 69700283 69700493 -74581996 + AluSg/x SINE Alu 89 299 -11 393 289 123 28 chr12 69700754 69700965 -74581524 - L2 LINE L2 -911 2403 2173 1048 182 14 26 chr12 69701186 69701487 -74581002 + MER2 DNA MER2_type 1 345 0 276 100 0 0 chr12 69701917 69701957 -74580532 + (T)n Simple_repeat Simple_repeat 1 40 0 614 148 39 0 chr12 69702399 69702527 -74579962 - Charlie5 DNA MER1_type -224 2388 2256 445 153 45 54 chr12 69702522 69702633 -74579856 - Charlie5 DNA MER1_type -2488 124 15 * 685 285 210 28 chr12 69702771 69703167 -74579322 + L2 LINE L2 2841 3308 -5 2613 213 76 27 chr12 69703252 69704627 -74577862 - L1MEc LINE L1 -3141 3074 1663 1778 236 59 2 chr12 69704620 69705108 -74577381 - L1MEc LINE L1 -5846 550 35 * 1787 149 17 7 chr12 69705209 69705497 -74576992 + AluJo SINE Alu 15 305 -7 263 275 0 44 chr12 69705882 69705973 -74576516 - MER63 DNA MER1_type 0 1060 974 328 230 140 0 chr12 69705974 69706074 -74576415 - MER63 DNA MER1_type -78 758 19 3037 146 9 0 chr12 69706091 69706619 -74575870 - L1 LINE L1 -2104 4042 3510 2265 118 0 9 chr12 69706643 69706958 -74575531 - AluSx SINE Alu 0 312 1 4389 122 15 15 chr12 69706977 69707324 -74575165 - Tigger1 DNA MER2_type -1667 751 405 2105 119 7 0 chr12 69707324 69707618 -74574871 - AluSx SINE Alu -16 296 1 4389 122 15 15 chr12 69707618 69707982 -74574507 - Tigger1 DNA MER2_type -2012 406 40 2018 145 0 16 chr12 69708464 69708768 -74573721 + AluJo SINE Alu 1 299 -13 453 238 7 34 chr12 69708996 69709143 -74573346 - L1MEd LINE L1 -5002 1117 975 4192 166 32 29 chr12 69709203 69710775 -74571714 - L1MB8 LINE L1 -9 6169 4598 1765 167 3 10 chr12 69710926 69711241 -74571248 - AluJb SINE Alu 0 312 1 2564 53 0 0 chr12 69712355 69712657 -74569832 - AluY SINE Alu -9 302 1 2305 127 3 0 chr12 69713101 69713471 -74569018 - L1P LINE L1 -917 5229 4859 2329 96 0 0 chr12 69713506 69713807 -74568682 - AluY SINE Alu -10 301 1 466 300 143 20 chr12 69713844 69714341 -74568148 + L1ME4a LINE L1 5302 5859 -262 223 70 23 23 chr12 69714360 69714403 -74568086 + (TA)n Simple_repeat Simple_repeat 1 43 0 1479 171 66 31 chr12 69714404 69714690 -74567799 - AluJo SINE Alu -16 296 1 239 162 88 29 chr12 69714696 69714764 -74567725 - HsTC2 DNA Tc2 -2 1896 1825 491 116 0 47 chr12 69714968 69715054 -74567435 + AluJ/FRAM SINE Alu 224 305 -7 906 268 187 3 chr12 69715060 69715407 -74567082 - L2 LINE L2 -961 2353 1943 827 126 11 182 chr12 69715412 69715624 -74566865 + MER50 LTR ERV1 7 165 -569 2315 116 3 3 chr12 69715624 69715935 -74566554 + AluSx SINE Alu 1 311 -1 827 126 11 182 chr12 69715935 69715991 -74566498 + MER50 LTR ERV1 165 229 -505 * 888 145 0 81 chr12 69715986 69716172 -74566317 + MER50 LTR ERV1 434 604 -130 24 32 0 0 chr12 69716172 69716203 -74566286 + AT_rich Low_complexity Low_complexity 1 31 0 389 268 191 18 chr12 69716790 69716958 -74565531 + MIR SINE MIR 13 209 -53 1025 198 48 76 chr12 69717142 69717373 -74565116 + L1M4 LINE L1 3592 3831 -2315 2214 109 36 7 chr12 69717373 69717676 -74564813 + AluSx SINE Alu 1 312 0 1025 198 48 76 chr12 69717676 69717888 -74564601 + L1M4 LINE L1 3831 4047 -2099 380 286 97 23 chr12 69719539 69719714 -74562775 + MER5A DNA MER1_type 2 189 0 2019 138 13 10 chr12 69720656 69720967 -74561522 + AluJb SINE Alu 1 312 0 185 81 0 54 chr12 69720970 69721007 -74561482 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 435 19 0 0 chr12 69721537 69721589 -74560900 + (TG)n Simple_repeat Simple_repeat 1 52 0 863 181 16 21 chr12 69722034 69722222 -74560267 + MER53 DNA DNA 1 187 -2 191 340 75 19 chr12 69722259 69722365 -74560124 + L2 LINE L2 2567 2678 -636 210 71 0 0 chr12 69722416 69722444 -74560045 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 1343 196 47 24 chr12 69722444 69722916 -74559573 - AluJb SINE Alu 0 312 1 1060 258 112 57 chr12 69723049 69723562 -74558927 + L2 LINE L2 2473 3038 -275 237 240 0 20 chr12 69723657 69723707 -74558782 + L2 LINE L2 3224 3272 0 32 0 0 0 chr12 69723853 69723885 -74558604 + AT_rich Low_complexity Low_complexity 1 32 0 259 349 72 20 chr12 69724192 69724344 -74558145 - MIR SINE MIR -90 172 13 589 232 135 11 chr12 69725968 69726153 -74556336 - MER63A DNA MER1_type -2 208 1 505 247 84 13 chr12 69726658 69726812 -74555677 + MIR SINE MIR 95 259 -3 410 189 9 0 chr12 69728517 69728628 -74553861 + GA-rich Low_complexity Low_complexity 2 113 0 27 62 0 0 chr12 69728633 69728681 -74553808 + GC_rich Low_complexity Low_complexity 1 48 0 195 125 0 0 chr12 69728868 69728908 -74553581 + (TCTCCC)n Simple_repeat Simple_repeat 6 45 0 186 143 0 0 chr12 69728948 69728983 -74553506 + (TCCCC)n Simple_repeat Simple_repeat 2 36 0 1444 187 4 8 chr12 69731017 69731268 -74551221 + AluJb SINE Alu 1 250 -62 2396 91 0 0 chr12 69732106 69732404 -74550085 + AluSq SINE Alu 1 298 -15 182 280 20 0 chr12 69732900 69732950 -74549539 + L3 LINE CR1 1521 1571 -6 1944 157 0 7 chr12 69733505 69733804 -74548685 - AluJb SINE Alu -15 297 1 283 312 160 21 chr12 69734474 69734711 -74547778 - L2 LINE L2 -815 2499 2230 214 262 168 63 chr12 69734923 69735114 -74547375 + L2 LINE L2 2677 2887 -427 1704 170 53 0 chr12 69735624 69735907 -74546582 + AluJb SINE Alu 1 298 -14 27 29 0 0 chr12 69736504 69736538 -74545951 + AT_rich Low_complexity Low_complexity 1 34 0 1964 145 3 16 chr12 69736806 69737117 -74545372 + AluJo SINE Alu 1 307 -5 1641 162 45 39 chr12 69737189 69737497 -74544992 - AluJo SINE Alu 0 312 3 318 301 61 16 chr12 69737981 69738094 -74544395 + MIR3 SINE MIR 74 197 -11 2249 93 0 20 chr12 69738094 69738395 -74544094 + AluSc SINE Alu 1 295 -14 318 301 61 16 chr12 69738395 69738407 -74544082 + MIR3 SINE MIR 197 207 -1 2191 113 7 0 chr12 69739284 69739585 -74542904 + AluSx SINE Alu 1 303 -9 2195 142 58 3 chr12 69739620 69740000 -74542489 - L1PA15 LINE L1 0 6165 5765 331 244 273 48 chr12 69740229 69740438 -74542051 - MIR SINE MIR 0 262 7 187 375 0 0 chr12 69740830 69740878 -74541611 + MIR SINE MIR 85 132 -76 2090 113 0 0 chr12 69741154 69741436 -74541053 - AluSq SINE Alu -10 303 22 276 302 28 28 chr12 69741649 69741755 -74540734 - L2 LINE L2 -3 3269 3164 1013 291 83 8 chr12 69741761 69742135 -74540354 - L2 LINE L2 -379 2935 2534 466 317 43 12 chr12 69742157 69742318 -74540171 + L2 LINE L2 1856 2021 -1293 * 542 297 55 6 chr12 69742308 69742490 -74539999 + MIR SINE MIR 59 249 -13 243 88 0 0 chr12 69742502 69742536 -74539953 + (CAT)n Simple_repeat Simple_repeat 3 36 0 446 289 84 29 chr12 69742536 69742775 -74539714 + L2 LINE L2 2020 2271 -1043 309 356 96 29 chr12 69743068 69743276 -74539213 + L2 LINE L2 2268 2489 -825 527 307 101 41 chr12 69743280 69743859 -74538630 + L2 LINE L2 2596 3216 -56 1317 196 21 35 chr12 69744896 69745201 -74537288 - AluJb SINE Alu 0 301 1 326 220 36 146 chr12 69746501 69746705 -74535784 - MIR SINE MIR -70 192 10 3019 51 3 0 chr12 69747092 69747462 -74535027 + L1PA10 LINE L1 5794 6164 -4 340 291 13 0 chr12 69747571 69747650 -74534839 - L2 LINE L2 -4 3268 3189 233 361 186 4 chr12 69747789 69748069 -74534420 - L2 LINE L2 -562 2752 2422 2055 147 0 0 chr12 69748075 69748375 -74534114 - AluJb SINE Alu -12 300 1 24 0 0 0 chr12 69748742 69748766 -74533723 + AT_rich Low_complexity Low_complexity 1 24 0 321 353 104 20 chr12 69749124 69749325 -74533164 - HAL1 LINE L1 -69 2438 2221 488 265 81 31 chr12 69749537 69749760 -74532729 - MLT1J LTR MaLR -264 247 14 371 316 18 41 chr12 69749762 69749933 -74532556 - HAL1b LINE L1 -435 913 747 257 314 86 0 chr12 69750644 69750714 -74531775 + MIR SINE MIR 52 127 -135 1271 271 3 41 chr12 69750720 69751108 -74531381 - MLT1I LTR MaLR -35 374 2 281 190 25 99 chr12 69751110 69751231 -74531258 + MIR SINE MIR 149 260 -2 3392 155 50 76 chr12 69751490 69752315 -74530174 + Charlie1 DNA MER1_type 1953 2755 -6 183 296 74 49 chr12 69752540 69752621 -74529868 + L2 LINE L2 3172 3254 -18 29 28 0 0 chr12 69753550 69753586 -74528903 + AT_rich Low_complexity Low_complexity 1 36 0 438 125 0 0 chr12 69754584 69754648 -74527841 + AluS SINE Alu 1 64 -254 1873 137 43 0 chr12 69755128 69755427 -74527062 - AluSx SINE Alu 0 312 1 837 211 19 102 chr12 69755549 69755815 -74526674 + MIR SINE MIR 9 252 -10 648 255 193 0 chr12 69756010 69756202 -74526287 - MIR SINE MIR 0 262 34 21 0 0 0 chr12 69757572 69757593 -74524896 + AT_rich Low_complexity Low_complexity 1 21 0 480 317 104 17 chr12 69758084 69758314 -74524175 + MIR SINE MIR 2 251 -11 21 0 0 0 chr12 69759359 69759380 -74523109 + AT_rich Low_complexity Low_complexity 1 21 0 283 214 0 36 chr12 69759509 69759565 -74522924 - L2 LINE L2 -35 3237 3184 316 320 100 31 chr12 69759735 69760074 -74522415 - L2 LINE L2 -208 3064 2690 191 368 24 8 chr12 69760364 69760489 -74522000 - L2 LINE L2 -712 2602 2476 773 239 165 18 chr12 69760842 69761060 -74521429 + MIR SINE MIR 2 251 -11 24 32 0 0 chr12 69761977 69762008 -74520481 + AT_rich Low_complexity Low_complexity 1 31 0 482 296 136 6 chr12 69762120 69762282 -74520207 + MIR3 SINE MIR 21 203 -5 269 154 211 0 chr12 69762843 69762895 -74519594 + L2 LINE L2 3247 3309 -4 23 54 0 0 chr12 69765374 69765411 -74517078 + AT_rich Low_complexity Low_complexity 1 37 0 2061 115 10 13 chr12 69765460 69765765 -74516724 + AluSx SINE Alu 1 304 -8 210 71 0 0 chr12 69766331 69766359 -74516130 + (TTATA)n Simple_repeat Simple_repeat 5 32 0 547 260 8 8 chr12 69766531 69766654 -74515835 + L2 LINE L2 3191 3313 0 211 273 195 0 chr12 69767157 69767234 -74515255 + MIR3 SINE MIR 68 159 -49 403 192 40 93 chr12 69767334 69767485 -74515004 + MER104 DNA Tc2 1 143 -37 252 215 161 11 chr12 69767499 69767592 -74514897 - MER103 DNA DNA -58 108 2 194 392 0 0 chr12 69767985 69768064 -74514425 - L2 LINE L2 -8 3264 3186 330 379 43 0 chr12 69769637 69769777 -74512712 + L2 LINE L2 3168 3313 0 942 259 35 90 chr12 69771005 69771407 -74511082 + L2 LINE L2 2934 3313 0 212 328 0 0 chr12 69771394 69771452 -74511037 + MIR SINE MIR 189 246 -16 * 22 35 0 0 chr12 69771747 69771776 -74510713 + AT_rich Low_complexity Low_complexity 1 29 0 2155 105 13 19 chr12 69772448 69772762 -74509727 + AluSx SINE Alu 1 312 0 623 241 101 31 chr12 69772770 69772998 -74509491 + MIR SINE MIR 19 262 0 200 157 0 78 chr12 69776144 69776195 -74506294 + CT-rich Low_complexity Low_complexity 2 48 0 2180 108 7 0 chr12 69779439 69779734 -74502755 + AluSx SINE Alu 1 297 -15 201 211 0 35 chr12 69780462 69780519 -74501970 + CT-rich Low_complexity Low_complexity 3 57 0 803 199 66 15 chr12 69780592 69780788 -74501701 + Charlie2 DNA MER1_type 105 310 -2472 202 240 20 0 chr12 69780883 69780933 -74501556 + (TCTG)n Simple_repeat Simple_repeat 3 53 0 522 252 73 0 chr12 69781025 69781176 -74501313 + Charlie2a DNA MER1_type 1501 1662 -1200 1299 196 16 206 chr12 69781284 69782195 -74500294 - LTR41 LTR ERVL -14 759 22 233 111 67 0 chr12 69782232 69782277 -74500212 + Charlie2 DNA MER1_type 2814 2861 -1 186 43 0 0 chr12 69782364 69782387 -74500102 + (TG)n Simple_repeat Simple_repeat 1 23 0 1448 50 0 0 chr12 69782540 69782720 -74499769 + L1PA5 LINE L1 5975 6154 0 26 30 0 0 chr12 69783250 69783283 -74499206 + AT_rich Low_complexity Low_complexity 1 33 0 263 343 36 102 chr12 69783693 69783967 -74498522 + L2 LINE L2 2992 3247 -25 668 181 219 7 chr12 69784298 69784453 -74498036 - MIR SINE MIR 0 262 75 21 0 0 0 chr12 69784524 69784545 -74497944 + AT_rich Low_complexity Low_complexity 1 21 0 203 152 0 0 chr12 69784587 69784620 -74497869 + (CA)n Simple_repeat Simple_repeat 2 34 0 222 259 196 9 chr12 69785163 69785275 -74497214 + MIR SINE MIR 114 246 -16 2354 59 0 0 chr12 69787033 69787322 -74495167 + AluY SINE Alu 1 289 -22 195 69 0 0 chr12 69787325 69787354 -74495135 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1188 131 11 0 chr12 69787354 69787529 -74494960 + AluSc SINE Alu 130 306 -3 190 321 36 12 chr12 69787545 69787629 -74494860 + MIR SINE MIR 80 165 -97 21 0 0 0 chr12 69787825 69787846 -74494643 + AT_rich Low_complexity Low_complexity 1 21 0 862 226 104 0 chr12 69788268 69788489 -74494000 + MER63 DNA MER1_type 687 930 -132 2073 133 3 10 chr12 69788864 69789173 -74493316 + AluSx SINE Alu 1 307 -5 1150 161 23 32 chr12 69789233 69789450 -74493039 - MER20 DNA MER1_type -4 215 1 1615 214 91 8 chr12 69789472 69789856 -74492633 + MER63 DNA MER1_type 646 1061 0 555 288 125 38 chr12 69790037 69790668 -74491821 + L1ME4a LINE L1 786 1471 -4925 293 295 45 38 chr12 69790701 69791000 -74491489 + L1ME4a LINE L1 3256 3555 -2660 345 247 56 104 chr12 69791050 69791172 -74491317 + L1ME4a LINE L1 3668 3773 -2442 3261 102 65 40 chr12 69791172 69791777 -74490712 + L1MA3 LINE L1 5686 6305 0 345 247 56 104 chr12 69791777 69791905 -74490584 + L1ME4a LINE L1 3773 3906 -2309 958 293 130 21 chr12 69792342 69793105 -74489384 + L1ME4a LINE L1 5339 6187 -3 321 328 2 48 chr12 69793691 69793850 -74488639 - MIR SINE MIR -59 149 2 501 252 50 22 chr12 69794010 69794149 -74488340 + MIR SINE MIR 51 193 -69 185 301 12 60 chr12 69794540 69794623 -74487866 + L3 LINE CR1 1051 1129 -448 251 274 48 40 chr12 69794770 69794894 -74487595 + L3 LINE CR1 1109 1233 -344 191 324 83 9 chr12 69794936 69795044 -74487445 - MER5A DNA MER1_type -48 141 26 206 208 0 38 chr12 69795213 69795266 -74487223 - L2 LINE L2 -935 2379 2329 381 292 51 0 chr12 69795432 69795569 -74486920 + MER103 DNA DNA 21 164 -2 20874 37 1 0 chr12 69795652 69798983 -74483506 - L1PA4 LINE L1 0 6155 2827 7725 20 0 0 chr12 69798981 69800431 -74482058 - L1PA2 LINE L1 -1 6154 4704 * 18775 33 0 0 chr12 69800432 69803107 -74479382 + L1PA2 LINE L1 2037 4710 -1436 12881 42 1 1 chr12 69803106 69804712 -74477777 - L1PA4 LINE L1 -3305 2841 1235 * 213 171 0 0 chr12 69806033 69806068 -74476421 + MIR SINE MIR 218 252 -10 491 108 0 0 chr12 69806543 69806626 -74475863 - L1PB1 LINE L1 -4 6147 6065 612 259 24 69 chr12 69807160 69807407 -74475082 + L2 LINE L2 2376 2611 -703 903 122 122 0 chr12 69807438 69807618 -74474871 - L1MC2 LINE L1 0 6344 6143 2470 152 12 0 chr12 69807618 69808025 -74474464 - L1MC3 LINE L1 -187 7598 7187 250 233 12 47 chr12 69808030 69808116 -74474373 - MLT1F1 LTR MaLR -450 117 35 318 118 40 26 chr12 69808116 69808192 -74474297 - L1MC3 LINE L1 -686 7099 7023 1434 157 4 17 chr12 69808193 69808429 -74474060 - AluJo SINE Alu -16 296 64 1992 133 5 49 chr12 69808429 69808798 -74473691 - L1MC3 LINE L1 -738 7047 6695 345 322 159 33 chr12 69808802 69809016 -74473473 + L2 LINE L2 2652 2892 -422 2174 161 29 0 chr12 69809960 69810339 -74472150 - MLT1B LTR MaLR 0 390 1 219 282 243 29 chr12 69810781 69810884 -74471605 - MIR SINE MIR -62 146 22 393 311 100 21 chr12 69811248 69811438 -74471051 - MIR SINE MIR -1 261 57 729 273 131 55 chr12 69812266 69812632 -74469857 - MLT1L LTR MaLR -220 395 2 22 35 0 0 chr12 69813542 69813571 -74468918 + AT_rich Low_complexity Low_complexity 1 29 0 1101 287 137 29 chr12 69813705 69813775 -74468714 - MLT1J LTR MaLR -9 502 441 1999 137 40 0 chr12 69813775 69814075 -74468414 + AluSx SINE Alu 1 312 0 1101 287 137 29 chr12 69814075 69814457 -74468032 - MLT1J LTR MaLR -70 441 1 234 318 24 12 chr12 69814580 69814665 -74467824 + L2 LINE L2 3226 3311 -2 338 203 0 14 chr12 69815621 69815690 -74466799 + MER112 DNA MER1_type 1 68 -192 481 203 88 27 chr12 69815691 69815839 -74466650 - MER115 DNA AcHobo -1 692 536 322 206 0 27 chr12 69815845 69815918 -74466571 - Zaphod DNA AcHobo -1157 2874 2804 338 339 133 0 chr12 69816312 69816492 -74465997 - MER115 DNA AcHobo -321 372 169 268 350 77 8 chr12 69816843 69816960 -74465529 + MER5A DNA MER1_type 44 168 -21 205 296 265 0 chr12 69817564 69817696 -74464793 - L2 LINE L2 -4 3268 3102 192 152 0 0 chr12 69817978 69818011 -74464478 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 71 0 0 chr12 69820346 69820388 -74462101 + AT_rich Low_complexity Low_complexity 1 42 0 2276 94 0 13 chr12 69821116 69821424 -74461065 + AluSc SINE Alu 1 304 -5 225 0 0 0 chr12 69821644 69821669 -74460820 + (TG)n Simple_repeat Simple_repeat 2 26 0 259 302 93 23 chr12 69821970 69822142 -74460347 - L1MC5 LINE L1 -35 7926 7743 25 0 0 0 chr12 69824287 69824312 -74458177 + AT_rich Low_complexity Low_complexity 1 25 0 341 265 137 10 chr12 69824379 69824481 -74458008 - L2 LINE L2 0 3313 3199 2221 61 34 20 chr12 69824920 69825215 -74457274 - AluY SINE Alu -12 299 1 410 263 121 75 chr12 69825363 69825504 -74456985 - L1M4 LINE L1 -3046 3100 2967 1676 178 23 7 chr12 69825504 69825807 -74456682 - AluJo SINE Alu -4 308 1 410 263 121 75 chr12 69825807 69826037 -74456452 - L1M4 LINE L1 -3179 2967 2712 2348 40 0 0 chr12 69826189 69826463 -74456026 - AluY SINE Alu -11 300 27 2135 58 0 4 chr12 69826636 69826913 -74455576 + L1PA7 LINE L1 5878 6153 -1 239 324 36 107 chr12 69827048 69827329 -74455160 + L2 LINE L2 2926 3186 -86 1788 112 29 89 chr12 69827355 69827668 -74454821 - AluSx SINE Alu -16 296 3 432 259 30 60 chr12 69828006 69828172 -74454317 + MLT1J2 LTR MaLR 277 437 -13 244 292 27 15 chr12 69828403 69828508 -74453981 - MLT1G LTR MaLR -16 574 474 614 85 11 0 chr12 69829225 69829319 -74453170 + (TCCA)n Simple_repeat Simple_repeat 4 98 0 995 205 64 20 chr12 69829541 69829790 -74452699 - L1ME2 LINE L1 -106 6058 5799 208 387 38 0 chr12 69830248 69830354 -74452135 - L2 LINE L2 -338 2975 2866 1748 128 8 4 chr12 69830408 69830659 -74451830 + AluSx SINE Alu 45 296 -16 887 251 99 0 chr12 69830714 69830937 -74451552 - MIR SINE MIR -9 253 9 207 186 0 0 chr12 69832929 69832972 -74449517 + (TA)n Simple_repeat Simple_repeat 2 44 0 23 33 0 0 chr12 69833160 69833190 -74449299 + AT_rich Low_complexity Low_complexity 1 30 0 2300 87 7 0 chr12 69833731 69834029 -74448460 - AluSx SINE Alu -12 300 1 22 0 0 0 chr12 69836154 69836176 -74446313 + AT_rich Low_complexity Low_complexity 1 22 0 2300 87 7 0 chr12 69838356 69838654 -74443835 + AluSx SINE Alu 1 300 -12 25 0 0 0 chr12 69839177 69839202 -74443287 + AT_rich Low_complexity Low_complexity 1 25 0 323 328 2 48 chr12 69839427 69839586 -74442903 + MIR SINE MIR 2 149 -59 257 143 41 0 chr12 69840229 69840278 -74442211 - L1ME4a LINE L1 -82 6039 5989 837 300 79 9 chr12 69840664 69840981 -74441508 + L2 LINE L2 2597 2935 -379 199 261 68 34 chr12 69841004 69841092 -74441397 + L2 LINE L2 3179 3269 -3 27 49 0 0 chr12 69841379 69841420 -74441069 + GC_rich Low_complexity Low_complexity 1 41 0 29 0 0 0 chr12 69841456 69841485 -74441004 + GC_rich Low_complexity Low_complexity 1 29 0 43 47 0 0 chr12 69841590 69841654 -74440835 + GC_rich Low_complexity Low_complexity 1 64 0 5041 186 47 7 chr12 69841787 69843011 -74439478 + L1 LINE L1 2969 4241 -1905 1798 166 11 55 chr12 69843239 69843601 -74438888 + MER7A DNA MER2_type 1 344 -2 792 169 47 133 chr12 69844433 69844627 -74437862 + L1 LINE L1 4080 4244 -1902 2118 130 3 0 chr12 69844627 69844920 -74437569 + AluSx SINE Alu 1 294 -18 792 169 47 133 chr12 69844920 69845004 -74437485 + L1 LINE L1 4244 4334 -1812 * 5044 243 18 20 chr12 69844999 69845851 -74436638 - L1MCb LINE L1 -2543 4021 3171 2148 123 0 0 chr12 69845851 69846198 -74436291 + AluSq SINE Alu 1 347 0 5044 243 18 20 chr12 69846198 69846820 -74435669 - L1MCb LINE L1 -3393 3171 2549 594 157 41 76 chr12 69846866 69847063 -74435426 - L1MCb LINE L1 -4014 2550 2361 * 23575 83 4 4 chr12 69847053 69851237 -74431252 - L1PA7 LINE L1 -2 6152 1970 12660 100 8 7 chr12 69851799 69855289 -74427200 - L1P3 LINE L1 -2969 3492 1 795 258 18 0 chr12 69855291 69855458 -74427031 - FAM SINE Alu -5 170 1 1724 147 137 7 chr12 69855463 69855871 -74426618 - L1MCb LINE L1 -4189 2375 1915 5113 138 46 23 chr12 69855888 69856180 -74426309 - L1MA8 LINE L1 -37 6254 5970 2023 123 20 7 chr12 69856180 69856472 -74426017 - AluSx SINE Alu -16 296 1 5113 138 46 23 chr12 69856472 69856643 -74425846 - L1MA8 LINE L1 -321 5970 5804 217 0 0 57 chr12 69856643 69856678 -74425811 + (TA)n Simple_repeat Simple_repeat 2 34 0 5113 138 46 23 chr12 69856678 69857507 -74424982 - L1MA8 LINE L1 -487 5804 4937 3254 158 12 7 chr12 69857508 69857923 -74424566 + L1 LINE L1 4333 4753 -1393 1220 180 71 74 chr12 69857923 69858289 -74424200 + MLT1A1 LTR MaLR 1 365 0 3254 158 12 7 chr12 69858289 69858462 -74424027 + L1 LINE L1 4753 4924 -1222 3920 181 69 49 chr12 69858468 69859321 -74423168 - L1MCb LINE L1 -4729 1835 931 2163 108 3 0 chr12 69859321 69859608 -74422881 - AluSg SINE Alu -17 293 6 3920 181 69 49 chr12 69859608 69860328 -74422161 - L1MCb LINE L1 -5633 931 227 183 130 56 0 chr12 69860332 69860386 -74422103 + (TA)n Simple_repeat Simple_repeat 1 57 0 192 77 0 0 chr12 69860413 69860439 -74422050 + (CA)n Simple_repeat Simple_repeat 2 27 0 1870 158 11 55 chr12 69860440 69860802 -74421687 - MER7A DNA MER2_type -2 344 1 320 277 70 40 chr12 69861126 69861455 -74421034 - L1ME LINE L1 -525 5596 5258 1749 146 50 7 chr12 69861595 69861875 -74420614 + AluJb SINE Alu 1 292 -20 195 267 22 0 chr12 69861876 69861921 -74420568 + MIR SINE MIR 61 106 -102 342 204 36 15 chr12 69862942 69863079 -74419410 + (TA)n Simple_repeat Simple_repeat 1 140 0 311 273 129 50 chr12 69863124 69863263 -74419226 - MIR3 SINE MIR -14 194 45 572 39 26 0 chr12 69863799 69863876 -74418613 - MADE1 DNA Mariner 0 80 2 2235 123 19 24 chr12 69863938 69864313 -74418176 - THE1C LTR MaLR -2 373 1 869 273 70 70 chr12 69864797 69865255 -74417234 - L2 LINE L2 -2 3311 2854 24 32 0 0 chr12 69865605 69865636 -74416853 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr12 69866627 69866664 -74415825 + AT_rich Low_complexity Low_complexity 1 37 0 428 216 52 138 chr12 69867142 69867460 -74415029 - L1ME LINE L1 -498 5623 5338 714 255 42 32 chr12 69867489 69867705 -74414784 + MIR SINE MIR 19 236 -26 299 277 10 40 chr12 69868265 69868366 -74414123 - MER91A DNA MER1_type -85 111 14 1814 155 13 7 chr12 69868509 69868818 -74413671 + AluJo SINE Alu 1 311 -1 263 335 16 72 chr12 69869104 69869298 -74413191 + L2 LINE L2 213 395 -2919 222 341 178 0 chr12 69869376 69869511 -74412978 + L2 LINE L2 558 716 -2598 380 233 158 5 chr12 69870330 69870524 -74411965 + L1ME LINE L1 5356 5584 -537 318 197 136 38 chr12 69870526 69870658 -74411831 + L1ME LINE L1 5617 5761 -360 301 344 123 0 chr12 69871692 69871846 -74410643 - L2 LINE L2 -2586 728 556 606 279 7 19 chr12 69872014 69872168 -74410321 + MER5B DNA MER1_type 7 158 -20 222 398 8 34 chr12 69872212 69872330 -74410159 + L2 LINE L2 3158 3272 0 593 330 87 18 chr12 69872816 69873253 -74409236 - L1M4 LINE L1 -3539 3309 2843 2437 69 7 0 chr12 69873275 69873578 -74408911 + AluY SINE Alu 1 305 -6 26 30 0 0 chr12 69873785 69873818 -74408671 + AT_rich Low_complexity Low_complexity 1 33 0 2318 225 68 15 chr12 69874245 69874894 -74407595 + L1M4 LINE L1 3365 4047 -2099 459 136 11 120 chr12 69875126 69875317 -74407172 + AluY SINE Alu 137 306 -5 26 30 0 0 chr12 69875524 69875557 -74406932 + AT_rich Low_complexity Low_complexity 1 33 0 1976 234 83 34 chr12 69875984 69876722 -74405767 + L1M4 LINE L1 3365 4138 -2008 315 293 0 0 chr12 69876740 69876863 -74405626 + T-rich Low_complexity Low_complexity 1 123 0 2862 267 59 41 chr12 69877106 69877878 -74404611 - L2 LINE L2 0 3313 2511 1953 183 3 6 chr12 69877878 69878227 -74404262 + MER7A DNA MER2_type 1 346 0 2862 267 59 41 chr12 69878227 69878738 -74403751 - L2 LINE L2 -802 2511 2011 1449 147 24 133 chr12 69879943 69880318 -74402171 - MER7A DNA MER2_type -5 341 10 4424 113 57 11 chr12 69880893 69881644 -74400845 - L1MA8 LINE L1 -4 7308 6523 1305 138 0 0 chr12 69881650 69881831 -74400658 - AluSp SINE Alu -28 285 105 1499 171 47 19 chr12 69881831 69882194 -74400295 - L1MA8 LINE L1 -794 6373 6001 315 310 58 45 chr12 69883363 69883518 -74398971 - L1M4 LINE L1 -5897 952 796 1717 179 54 5 chr12 69883608 69883977 -74398512 - L1MA8 LINE L1 -1158 6009 5623 30 27 0 0 chr12 69883978 69884015 -74398474 + AT_rich Low_complexity Low_complexity 1 37 0 1988 123 28 0 chr12 69884015 69884332 -74398157 - L1PA14 LINE L1 -9 6152 5827 28 29 0 0 chr12 69884465 69884500 -74397989 + AT_rich Low_complexity Low_complexity 1 35 0 5348 131 10 2 chr12 69884500 69885643 -74396846 - L1PA14 LINE L1 -9 6152 4993 3739 201 4 1 chr12 69885643 69886375 -74396114 + L1P LINE L1 1882 2615 -3531 1064 93 110 6 chr12 69886384 69886408 -74396081 - L1MA3 LINE L1 0 6305 6285 399 68 0 0 chr12 69886408 69886467 -74396022 + (TA)n Simple_repeat Simple_repeat 2 60 0 1064 93 110 6 chr12 69886467 69886624 -74395865 - L1MA3 LINE L1 -20 6285 6105 9828 245 50 21 chr12 69886625 69886976 -74395513 - L1MA8 LINE L1 -1542 5625 5286 2128 118 3 10 chr12 69886976 69887282 -74395207 - AluSq SINE Alu -7 306 3 9828 245 50 21 chr12 69887282 69889775 -74392714 - L1MA8 LINE L1 -1881 5286 2949 2144 115 0 16 chr12 69889775 69890080 -74392409 - AluSx SINE Alu -12 300 1 9828 245 50 21 chr12 69890080 69891579 -74390910 - L1MA8 LINE L1 -4218 2949 1494 188 312 129 11 chr12 69892390 69892483 -74390006 - L2 LINE L2 0 3272 3169 507 277 166 71 chr12 69892998 69893420 -74389069 - L2 LINE L2 -48 3265 2804 260 91 23 0 chr12 69893971 69894015 -74388474 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 1531 156 26 0 chr12 69897338 69897607 -74384882 + L1M3 LINE L1 5456 5731 -452 24 0 0 0 chr12 69897800 69897824 -74384665 + AT_rich Low_complexity Low_complexity 1 24 0 270 269 15 0 chr12 69898338 69898405 -74384084 - MARNA DNA Mariner -177 409 342 222 327 109 0 chr12 69899246 69899347 -74383142 - MIR SINE MIR -124 138 27 192 200 36 18 chr12 69899548 69899603 -74382886 - L3b LINE CR1 -213 1370 1315 375 278 37 56 chr12 69899704 69899866 -74382623 - L3b LINE CR1 -317 1266 1108 1835 184 95 25 chr12 69900487 69900961 -74381528 + Charlie4a DNA MER1_type 2 508 0 382 299 140 36 chr12 69901219 69901440 -74381049 + MIR SINE MIR 4 247 -15 446 291 135 33 chr12 69902118 69902362 -74380127 + MLT1L LTR MaLR 125 393 -222 441 242 32 25 chr12 69902395 69902552 -74379937 + MLT1L LTR MaLR 458 615 0 267 293 35 34 chr12 69902648 69902797 -74379692 + L1MEd LINE L1 979 1216 -1274 349 368 142 5 chr12 69902821 69903033 -74379456 + HAL1 LINE L1 1315 1555 -952 614 311 106 40 chr12 69903371 69903960 -74378529 + L1MEd LINE L1 2124 2749 -3380 256 256 15 8 chr12 69904448 69904581 -74377908 + L1MEd LINE L1 3112 3245 -2884 206 294 24 35 chr12 69906071 69906156 -74376333 - L2 LINE L2 -2660 654 571 345 229 48 78 chr12 69906262 69906428 -74376061 - L2 LINE L2 -56 3257 3097 518 205 0 9 chr12 69908247 69908359 -74374130 - MLT1A2 LTR MaLR -48 326 216 1288 166 16 4 chr12 69908382 69908629 -74373860 - L1MB3 LINE L1 -2 6181 5932 22 0 0 0 chr12 69909049 69909071 -74373418 + AT_rich Low_complexity Low_complexity 1 22 0 2198 119 3 0 chr12 69910347 69910642 -74371847 - AluSx SINE Alu -16 296 1 21 36 0 0 chr12 69910645 69910673 -74371816 + AT_rich Low_complexity Low_complexity 1 28 0 325 308 31 39 chr12 69912955 69913085 -74369404 - L2 LINE L2 -5 3308 3180 351 263 35 26 chr12 69913114 69913228 -74369261 + HAL1b LINE L1 793 907 -441 914 156 45 34 chr12 69913272 69913451 -74369038 + MER3 DNA MER1_type 29 209 0 1796 90 0 35 chr12 69913728 69913984 -74368505 - AluY SINE Alu -14 297 51 189 0 0 0 chr12 69915957 69915978 -74366511 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 342 306 52 32 chr12 69916183 69916325 -74366164 + MIR SINE MIR 19 165 -43 330 340 82 14 chr12 69916553 69916700 -74365789 - L2 LINE L2 -9 3263 3107 1686 168 4 14 chr12 69918706 69919032 -74363457 + AluJb SINE Alu 6 328 0 26 30 0 0 chr12 69919927 69919960 -74362529 + AT_rich Low_complexity Low_complexity 1 33 0 331 247 35 0 chr12 69920098 69920183 -74362306 - MER5B DNA MER1_type -56 122 35 * 532 259 38 25 chr12 69920182 69920340 -74362149 - MIR SINE MIR -75 187 28 182 286 19 86 chr12 69920283 69920388 -74362101 - L2 LINE L2 -3115 199 102 * 1846 176 3 3 chr12 69920439 69920735 -74361754 - AluJb SINE Alu -16 296 1 213 65 0 0 chr12 69921904 69921935 -74360554 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 2992 34 0 0 chr12 69921935 69922286 -74360203 - L1PA7 LINE L1 -16 6138 5788 1629 82 0 4 chr12 69922286 69922531 -74359958 + L1P LINE L1 5131 5374 -772 185 0 40 0 chr12 69922554 69922579 -74359910 + (TTA)n Simple_repeat Simple_repeat 2 27 0 772 232 235 20 chr12 69926524 69926830 -74355659 + L2 LINE L2 2942 3313 0 2207 104 0 0 chr12 69928691 69928978 -74353511 + AluY SINE Alu 1 287 -24 1107 159 22 0 chr12 69928984 69929166 -74353323 + AluSc SINE Alu 115 300 -9 299 250 28 0 chr12 69929570 69929642 -74352847 + MIR SINE MIR 81 154 -108 579 197 183 14 chr12 69932301 69932443 -74350046 + MER5A DNA MER1_type 1 166 -23 2090 133 16 10 chr12 69933469 69933778 -74348711 - AluSx SINE Alu -1 311 1 336 196 12 52 chr12 69934016 69934189 -74348300 + GA-rich Low_complexity Low_complexity 5 170 0 343 291 99 40 chr12 69934559 69934710 -74347779 - MIR SINE MIR -93 169 10 617 146 0 0 chr12 69934993 69935096 -74347393 - L1PB3 LINE L1 0 6154 6052 302 301 165 8 chr12 69936199 69936332 -74346157 - L2 LINE L2 -1 3271 3118 218 217 0 0 chr12 69936671 69936717 -74345772 + (TA)n Simple_repeat Simple_repeat 2 47 0 13935 128 9 56 chr12 69936718 69938570 -74343919 + Tigger1 DNA MER2_type 1 1705 -713 728 180 8 0 chr12 69938570 69938698 -74343791 - FLAM_C SINE Alu -3 130 2 13935 128 9 56 chr12 69938698 69939381 -74343108 + Tigger1 DNA MER2_type 1705 2418 0 279 241 0 0 chr12 69939381 69939464 -74343025 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 231 88 0 0 chr12 69939466 69939500 -74342989 + (CATA)n Simple_repeat Simple_repeat 4 37 0 1541 136 30 109 chr12 69940097 69940465 -74342024 + MER7A DNA MER2_type 1 337 -9 1559 155 8 0 chr12 69940907 69941158 -74341331 - L1PB4 LINE L1 -13 6143 5891 329 279 121 12 chr12 69941169 69941334 -74341155 + Charlie8 DNA MER1_type 94 276 -2141 441 271 114 0 chr12 69941507 69941647 -74340842 - MIR SINE MIR -89 173 18 2245 232 62 113 chr12 69941652 69943392 -74339097 - Charlie7 DNA MER1_type -4 2608 957 271 224 15 15 chr12 69943392 69943459 -74339030 + MER65B LTR ERV1 1 67 -394 720 200 19 97 chr12 69943496 69943528 -74338961 + MER65B LTR ERV1 179 212 -319 969 50 29 0 chr12 69943528 69943667 -74338822 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 1586 163 3 38 chr12 69943669 69943958 -74338531 - AluJb SINE Alu -33 279 1 720 200 19 97 chr12 69943958 69944228 -74338261 + MER65B LTR ERV1 213 523 -8 1626 168 38 22 chr12 69944291 69944660 -74337829 - Tigger6a DNA MER2_type -331 752 378 644 213 21 0 chr12 69944657 69944798 -74337691 - Tigger6a DNA MER2_type -938 145 2 * 1263 188 17 114 chr12 69945160 69945564 -74336925 - MLT1A1 LTR MaLR 0 365 1 551 263 85 27 chr12 69946178 69946402 -74336087 - MARNA DNA Mariner -7 579 343 800 240 154 73 chr12 69946749 69947299 -74335190 + MLT1G1 LTR MaLR 1 595 0 276 292 0 14 chr12 69947749 69947821 -74334668 - L2 LINE L2 -1 3271 3201 1226 120 5 42 chr12 69948003 69948220 -74334269 + L1PA10 LINE L1 5958 6166 -2 724 173 0 0 chr12 69948227 69948354 -74334135 + MIR SINE MIR 136 262 0 22 56 0 0 chr12 69948417 69948453 -74334036 + AT_rich Low_complexity Low_complexity 1 36 0 370 262 34 47 chr12 69948453 69948602 -74333887 - MARNA DNA Mariner -338 248 102 275 226 65 57 chr12 69948509 69948633 -74333856 + MARNA DNA Mariner 393 517 -69 * 969 299 68 28 chr12 69948919 69949634 -74332855 + L2 LINE L2 2586 3313 0 2465 117 60 5 chr12 69949828 69950231 -74332258 - MSTA LTR MaLR -3 425 1 890 240 48 121 chr12 69950533 69951154 -74331335 - MLT1G LTR MaLR 0 590 15 459 299 32 13 chr12 69951164 69951321 -74331168 - MIR SINE MIR -42 220 61 633 296 108 35 chr12 69952349 69952747 -74329742 - L2 LINE L2 -4 3309 2883 269 51 0 0 chr12 69952876 69952915 -74329574 - MADE1 DNA Mariner 0 80 42 374 252 48 10 chr12 69953762 69953865 -74328624 - MIR SINE MIR -90 172 66 994 223 119 32 chr12 69954085 69954547 -74327942 + MLT1G3 LTR MaLR 3 593 -2 657 181 70 41 chr12 69956462 69956633 -74325856 + MLT1B LTR MaLR 1 176 -214 181 219 0 0 chr12 69957712 69957753 -74324736 + MIR SINE MIR 66 106 -156 2099 130 3 29 chr12 69957825 69958140 -74324349 + AluSx SINE Alu 1 307 -5 22 0 0 0 chr12 69958378 69958400 -74324089 + AT_rich Low_complexity Low_complexity 1 22 0 228 260 39 0 chr12 69958461 69958538 -74323951 - L1ME LINE L1 -207 5914 5835 324 0 0 0 chr12 69958541 69958577 -74323912 + (TG)n Simple_repeat Simple_repeat 2 37 0 526 255 13 13 chr12 69958980 69959129 -74323360 + MIR SINE MIR 100 248 -14 204 97 0 0 chr12 69959136 69959167 -74323322 + (CAT)n Simple_repeat Simple_repeat 3 33 0 43215 34 27 4 chr12 69959225 69964913 -74317576 - L1PA3 LINE L1 0 6155 316 2841 16 0 13 chr12 69964913 69965228 -74317261 - AluYa5 SINE Alu 0 311 1 43215 34 27 4 chr12 69965228 69965550 -74316939 - L1PA3 LINE L1 -5839 316 3 204 286 0 0 chr12 69965695 69965744 -74316745 + GA-rich Low_complexity Low_complexity 3 51 0 832 269 75 75 chr12 69966128 69966592 -74315897 - LTR16B LTR ERVL 0 464 1 206 266 203 16 chr12 69966614 69966742 -74315747 - MIR SINE MIR 0 262 111 288 0 0 0 chr12 69967359 69967391 -74315098 + (GGA)n Simple_repeat Simple_repeat 2 33 0 255 220 0 0 chr12 69968075 69968125 -74314364 - L2 LINE L2 -12 3260 3211 598 252 110 32 chr12 69968721 69968939 -74313550 + MIR SINE MIR 27 261 -1 191 214 18 71 chr12 69969182 69969238 -74313251 - MIR3 SINE MIR -31 177 125 21 0 0 0 chr12 69969296 69969317 -74313172 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr12 69969923 69969943 -74312546 + (T)n Simple_repeat Simple_repeat 1 20 0 1084 204 201 10 chr12 69970362 69970651 -74311838 - MER2 DNA MER2_type 0 344 1 267 320 78 33 chr12 69971659 69971812 -74310677 + MIR SINE MIR 71 230 -32 916 267 143 20 chr12 69973211 69973653 -74308836 + L1ME4a LINE L1 5617 6112 -9 212 292 22 45 chr12 69974400 69974489 -74308000 - L3 LINE CR1 -11 1566 1480 414 274 67 117 chr12 69974630 69974815 -74307674 + L2 LINE L2 2916 3078 -194 495 236 75 0 chr12 69974815 69974921 -74307568 + MER81 DNA DNA 1 114 0 414 274 67 117 chr12 69974921 69975078 -74307411 + L2 LINE L2 3078 3241 -31 351 0 0 0 chr12 69975117 69975156 -74307333 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 376 230 20 86 chr12 69975486 69975638 -74306851 - MIR SINE MIR -119 143 2 220 341 15 30 chr12 69975893 69976028 -74306461 - MIR SINE MIR -56 152 20 327 130 0 0 chr12 69977238 69977292 -74305197 + (GA)n Simple_repeat Simple_repeat 2 55 0 1733 168 29 73 chr12 69977977 69978358 -74304131 + MLT1B LTR MaLR 27 390 0 548 282 41 14 chr12 69980503 69980723 -74301766 + L2 LINE L2 2251 2476 -838 579 267 35 2 chr12 69980730 69980923 -74301566 + MLT1H LTR MaLR 34 228 -321 708 306 177 4 chr12 69980943 69981556 -74300933 + L2 LINE L2 2530 3238 -75 297 194 32 16 chr12 69981748 69981810 -74300679 - AluS SINE Alu -240 63 1 180 0 0 0 chr12 69981810 69981830 -74300659 + (TA)n Simple_repeat Simple_repeat 2 21 0 2186 115 3 3 chr12 69981996 69982291 -74300198 + AluSc SINE Alu 1 295 -14 394 260 54 95 chr12 69983711 69983820 -74298669 + MIR SINE MIR 31 143 -119 1850 172 10 0 chr12 69983820 69984122 -74298367 + AluSx SINE Alu 1 305 -7 394 260 54 95 chr12 69984122 69984254 -74298235 + MIR SINE MIR 143 262 0 738 215 35 7 chr12 69984267 69984411 -74298078 - MLT1A2 LTR MaLR -11 363 216 734 88 7 88 chr12 69984769 69984917 -74297572 + L1PA13 LINE L1 6028 6163 0 424 323 25 0 chr12 69986144 69986305 -74296184 - MIR SINE MIR -27 235 71 331 266 107 45 chr12 69987831 69988008 -74294481 + MLT1K LTR MaLR 379 566 -22 1130 286 70 22 chr12 69988209 69988611 -74293878 - LTR16A LTR ERVL -29 421 1 23 0 0 0 chr12 69989973 69989996 -74292493 + AT_rich Low_complexity Low_complexity 1 23 0 576 271 53 38 chr12 69990259 69990521 -74291968 + L1M4 LINE L1 3919 4184 -1962 507 301 51 8 chr12 69990622 69990878 -74291611 + L1M4 LINE L1 4336 4602 -1544 232 259 155 9 chr12 69993631 69993747 -74288742 + MIR SINE MIR 64 196 -66 416 363 16 0 chr12 69994077 69994267 -74288222 - MER117 DNA MER1_type 0 197 5 315 231 58 48 chr12 69994749 69994853 -74287636 + L2 LINE L2 3168 3272 0 321 301 48 6 chr12 69996203 69996369 -74286120 - HAL1 LINE L1 -853 1654 1482 627 249 72 16 chr12 69996386 69996691 -74285798 - HAL1 LINE L1 -1106 1401 1080 608 158 99 0 chr12 69996812 69996913 -74285576 + AluJb SINE Alu 13 123 -189 1554 99 9 5 chr12 69996926 69997137 -74285352 + AluSg/x SINE Alu 89 300 -10 261 255 112 37 chr12 69997137 69997298 -74285191 - HAL1 LINE L1 -1498 1009 837 303 203 0 0 chr12 69997381 69997445 -74285044 + CT-rich Low_complexity Low_complexity 3 66 0 262 204 0 0 chr12 69997493 69997537 -74284952 + L1ME LINE L1 5539 5582 -580 707 211 0 0 chr12 69998072 69998195 -74284294 - FLAM_C SINE Alu -6 127 5 286 219 8 28 chr12 69998200 69998313 -74284176 - L1ME LINE L1 -380 5782 5675 489 67 0 0 chr12 69998353 69998413 -74284076 + MSTA LTR MaLR 369 428 0 1463 150 103 22 chr12 69998417 69998690 -74283799 - MSTA LTR MaLR -133 295 1 9544 135 14 46 chr12 69998694 69999849 -74282640 - MSTA-int LTR MaLR -4 1576 487 2278 105 3 0 chr12 69999849 70000145 -74282344 + AluY SINE Alu 1 297 -14 9544 135 14 46 chr12 70000145 70000615 -74281874 - MSTA-int LTR MaLR -1093 487 3 2198 117 130 18 chr12 70000617 70001001 -74281488 - MSTA LTR MaLR 0 428 2 432 58 0 0 chr12 70001001 70001053 -74281436 - L1 LINE L1 -1580 4566 4515 957 117 15 7 chr12 70001865 70002002 -74280487 + THE1B LTR MaLR 227 364 0 1789 232 37 85 chr12 70002301 70002881 -74279608 + L1ME3A LINE L1 5523 6068 -102 1518 201 80 19 chr12 70002881 70003054 -74279435 + MSTD LTR MaLR 1 162 -234 1473 175 73 11 chr12 70003054 70003328 -74279161 + AluJb SINE Alu 7 297 -15 1518 201 80 19 chr12 70003328 70003527 -74278962 + MSTD LTR MaLR 162 396 0 1789 232 37 85 chr12 70003527 70003618 -74278871 + L1ME3A LINE L1 6068 6162 -8 366 312 64 0 chr12 70003903 70004044 -74278445 - MIR SINE MIR -40 222 73 203 234 141 0 chr12 70004154 70004218 -74278271 - MIR3 SINE MIR -51 157 85 1722 252 89 71 chr12 70004396 70005126 -74277363 + Zaphod DNA AcHobo 9 751 -3280 * 5288 128 37 37 chr12 70005122 70006058 -74276431 + L1MA10 LINE L1 5386 6321 -13 286 143 0 36 chr12 70006065 70006121 -74276368 - FAM SINE Alu -1 178 125 925 202 0 34 chr12 70006073 70006251 -74276238 - FAM SINE Alu -3 172 1 481 156 49 65 chr12 70006265 70006528 -74275961 + Zaphod DNA AcHobo 732 990 -3041 949 222 45 45 chr12 70006547 70006925 -74275564 + Zaphod DNA AcHobo 3654 4031 0 3505 136 23 19 chr12 70007187 70007827 -74274662 + L1MA7 LINE L1 5639 6281 -10 24 0 0 0 chr12 70007827 70007851 -74274638 + AT_rich Low_complexity Low_complexity 1 24 0 267 277 12 12 chr12 70007891 70007974 -74274515 + CT-rich Low_complexity Low_complexity 1 83 0 689 164 70 6 chr12 70008748 70008919 -74273570 - MER53 DNA DNA -4 185 4 366 245 11 0 chr12 70009700 70009794 -74272695 + MIR SINE MIR 168 262 0 25 31 0 0 chr12 70010094 70010126 -74272363 + AT_rich Low_complexity Low_complexity 1 32 0 284 245 147 0 chr12 70010157 70010259 -74272230 - MIR SINE MIR -73 189 73 799 153 93 6 chr12 70011508 70011691 -74270798 + MER3 DNA MER1_type 11 209 0 357 297 61 68 chr12 70011810 70011958 -74270531 - L2 LINE L2 0 3272 3126 317 308 19 31 chr12 70013324 70013582 -74268907 - L1MDa LINE L1 -856 1634 1336 371 306 76 52 chr12 70013731 70014061 -74268428 - L1MDa LINE L1 -4980 1139 802 912 287 37 8 chr12 70014556 70014800 -74267689 + MIR SINE MIR 12 262 0 28 48 0 0 chr12 70014872 70014914 -74267575 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr12 70014953 70014996 -74267493 + AT_rich Low_complexity Low_complexity 1 43 0 1416 166 10 52 chr12 70016100 70016407 -74266082 + L1MC1 LINE L1 6040 6333 0 387 168 137 11 chr12 70016409 70016504 -74265985 - LTR50 LTR ERVL -688 107 1 921 144 8 0 chr12 70016655 70016787 -74265702 - FLAM_C SINE Alu -10 133 1 535 299 0 0 chr12 70017259 70017366 -74265123 - L2 LINE L2 -10 3262 3156 235 287 235 9 chr12 70017359 70017474 -74265015 + MIR SINE MIR 72 212 -50 * 840 328 120 20 chr12 70018284 70018913 -74263576 + L2 LINE L2 2529 3218 -95 232 396 84 24 chr12 70019049 70019347 -74263142 + L2 LINE L2 2917 3232 -40 2414 87 0 0 chr12 70021072 70021383 -74261106 + AluY SINE Alu 1 311 0 1061 247 59 30 chr12 70021385 70021757 -74260732 + L1MC4 LINE L1 6755 7137 -905 2025 99 11 7 chr12 70021770 70022054 -74260435 + AluSx SINE Alu 1 285 -27 6748 132 43 3 chr12 70023795 70024914 -74257575 + MER57-int LTR ERV1 5837 7000 -537 205 180 0 60 chr12 70024915 70024965 -74257524 + CT-rich Low_complexity Low_complexity 4 50 0 3517 135 31 3 chr12 70025165 70025737 -74256752 - MER57B-int LTR ERV1 -6949 588 1 2782 128 12 5 chr12 70025737 70026168 -74256321 - MER57B LTR ERV1 0 434 1 323 123 55 41 chr12 70026170 70026243 -74256246 - MER4A LTR ERV1 -589 75 2 320 130 0 58 chr12 70026245 70026314 -74256175 - MER4A-int LTR ERV1 0 6598 6534 195 266 138 11 chr12 70127083 70127177 -74155312 + L2 LINE L2 1965 2070 -1244 216 0 0 0 chr12 70127787 70127811 -74154678 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 336 283 61 0 chr12 70127816 70127915 -74154574 - L2 LINE L2 -6 3307 3203 282 116 0 0 chr12 70127938 70127981 -74154508 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 241 188 0 21 chr12 70127998 70128046 -74154443 + GA-rich Low_complexity Low_complexity 1 47 0 467 293 31 40 chr12 70128046 70128268 -74154221 - L2 LINE L2 -167 3146 2927 6081 96 13 0 chr12 70129056 70129883 -74152606 + L1PA10 LINE L1 5331 6168 0 21 0 0 0 chr12 70130122 70130143 -74152346 + AT_rich Low_complexity Low_complexity 1 21 0 1841 150 3 3 chr12 70130229 70130515 -74151974 + AluJo SINE Alu 1 286 -26 656 256 24 0 chr12 70131119 70131283 -74151206 - L2 LINE L2 0 3313 3146 684 279 61 41 chr12 70131485 70131721 -74150768 + L1ME3A LINE L1 4774 5004 -1160 2172 106 0 53 chr12 70131721 70132043 -74150446 + AluSx SINE Alu 8 312 0 684 279 61 41 chr12 70132043 70132551 -74149938 + L1ME3A LINE L1 5004 5531 -633 609 290 12 49 chr12 70132559 70132804 -74149685 + L1ME3A LINE L1 5602 5837 -333 545 236 46 8 chr12 70133131 70133289 -74149200 + MIR SINE MIR 46 212 -50 2169 109 13 20 chr12 70135775 70136078 -74146411 + AluSg SINE Alu 1 301 -9 372 43 0 0 chr12 70136078 70136124 -74146365 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 1862 147 4 7 chr12 70136277 70136556 -74145933 + AluJo SINE Alu 3 280 -32 417 188 0 0 chr12 70136560 70136645 -74145844 + (CA)n Simple_repeat Simple_repeat 2 86 0 1349 305 62 2 chr12 70136866 70137332 -74145157 + MER20B DNA MER1_type 1 494 -289 1805 66 9 4 chr12 70137356 70137582 -74144907 + AluY SINE Alu 73 299 -12 222 118 0 0 chr12 70138203 70138237 -74144252 + (A)n Simple_repeat Simple_repeat 1 34 0 6881 109 11 5 chr12 70138248 70139250 -74143239 + L1MA6 LINE L1 5293 6300 0 2162 119 0 0 chr12 70139328 70139622 -74142867 - AluSg1 SINE Alu -15 294 1 634 216 183 9 chr12 70139806 70140019 -74142470 + MER20B DNA MER1_type 514 763 -20 1980 122 0 61 chr12 70140029 70140356 -74142133 - AluSg SINE Alu -3 307 1 505 281 64 30 chr12 70140642 70140845 -74141644 - MIR SINE MIR -33 229 20 228 333 122 0 chr12 70141154 70141244 -74141245 + L2 LINE L2 3155 3255 -17 458 299 26 0 chr12 70141747 70141864 -74140625 + L2 LINE L2 3153 3272 0 248 208 0 0 chr12 70142637 70142685 -74139804 + MIR SINE MIR 30 77 -131 1576 157 42 28 chr12 70143035 70143321 -74139168 - AluJo SINE Alu -22 290 1 1684 176 7 0 chr12 70143484 70143757 -74138732 - AluJb SINE Alu -29 283 9 2630 134 30 26 chr12 70143834 70144260 -74138229 - MSTA LTR MaLR 0 428 1 2211 208 34 34 chr12 70144494 70144805 -74137684 - MLT1D LTR MaLR 0 505 192 1945 130 7 39 chr12 70144805 70145113 -74137376 - AluSx SINE Alu -14 298 1 2211 208 34 34 chr12 70145113 70145306 -74137183 - MLT1D LTR MaLR -312 193 1 333 366 124 33 chr12 70147727 70148058 -74134431 - L2 LINE L2 -2 3270 2910 330 340 69 21 chr12 70148091 70148235 -74134254 - L2 LINE L2 -455 2859 2709 417 120 33 65 chr12 70148555 70148647 -74133842 - AluY SINE Alu -13 298 210 255 275 21 14 chr12 70148667 70148854 -74133635 + (TCTTG)n Simple_repeat Simple_repeat 1 188 0 207 307 7 36 chr12 70148813 70148950 -74133539 + CT-rich Low_complexity Low_complexity 5 137 0 * 538 58 0 0 chr12 70149095 70149164 -74133325 - Alu SINE Alu -241 69 1 261 240 103 83 chr12 70149317 70149589 -74132900 + L1M4 LINE L1 5313 5597 -524 2013 118 11 4 chr12 70149589 70149901 -74132588 + AluSx SINE Alu 1 314 0 261 240 103 83 chr12 70149901 70150032 -74132457 + L1M4 LINE L1 5597 5724 -397 268 237 225 0 chr12 70150164 70150278 -74132211 - MIR SINE MIR -71 137 3 2216 113 0 0 chr12 70150346 70150639 -74131850 + AluSg SINE Alu 1 293 -17 1066 219 52 17 chr12 70151523 70151810 -74130679 - HsTC2 DNA Tc2 -2 1896 1600 4828 134 14 61 chr12 70151810 70152179 -74130310 - L1MA5 LINE L1 -4 6296 5911 2298 100 0 7 chr12 70152179 70152480 -74130009 - AluSg SINE Alu -11 299 1 4828 134 14 61 chr12 70152480 70152976 -74129513 - L1MA5 LINE L1 -389 5911 5472 291 155 107 36 chr12 70152989 70153073 -74129416 - L1MA5 LINE L1 -931 5374 5285 240 136 0 0 chr12 70153064 70153108 -74129381 + L1M2 LINE L1 5579 5622 -669 * 198 0 0 0 chr12 70153146 70153168 -74129321 + (TA)n Simple_repeat Simple_repeat 2 23 0 474 83 0 0 chr12 70153283 70153355 -74129134 + (TC)n Simple_repeat Simple_repeat 1 72 0 1766 68 0 13 chr12 70153359 70153594 -74128895 - AluY SINE Alu -39 272 41 2054 78 0 84 chr12 70153596 70153917 -74128572 - AluSx SINE Alu -18 294 1 533 297 172 7 chr12 70153932 70154205 -74128284 - L2 LINE L2 -910 2404 2087 2544 58 3 0 chr12 70154728 70154856 -74127633 + AluY SINE Alu 1 127 -184 216 0 0 0 chr12 70154856 70154880 -74127609 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2544 58 3 0 chr12 70154880 70155060 -74127429 + AluY SINE Alu 127 310 -1 510 114 0 0 chr12 70156325 70156404 -74126085 + (GGGGA)n Simple_repeat Simple_repeat 1 79 0 545 124 0 0 chr12 70156522 70156611 -74125878 + (GGGGA)n Simple_repeat Simple_repeat 1 89 0 24 67 0 0 chr12 70157403 70157448 -74125041 + GC_rich Low_complexity Low_complexity 1 45 0 27 49 0 0 chr12 70157498 70157539 -74124950 + GC_rich Low_complexity Low_complexity 1 41 0 193 278 98 45 chr12 70158054 70158187 -74124302 + L2 LINE L2 3173 3312 -1 671 260 62 61 chr12 70158770 70159137 -74123352 - L1ME2 LINE L1 -283 5881 5487 5488 139 92 73 chr12 70159137 70160685 -74121804 + pTR5 LTR ERV1 745 2438 0 251 159 0 23 chr12 70160824 70160868 -74121621 + MER3 DNA MER1_type 1 43 -166 346 273 86 39 chr12 70161237 70161365 -74121124 + L2 LINE L2 3180 3313 0 249 212 47 47 chr12 70161852 70161937 -74120552 - MLT1L LTR MaLR -336 279 195 1806 217 16 16 chr12 70163020 70163394 -74119095 + MLT1A2 LTR MaLR 1 374 0 306 0 0 0 chr12 70163474 70163508 -74118981 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 406 98 0 0 chr12 70163533 70163584 -74118905 - AluJ/FLAM SINE Alu -213 99 49 1741 86 0 21 chr12 70163681 70163915 -74118574 + AluSq SINE Alu 73 301 -12 1314 256 52 77 chr12 70163915 70164666 -74117823 + L1MEc LINE L1 815 1546 -4850 2050 135 0 13 chr12 70165153 70165457 -74117032 - AluSx SINE Alu -12 300 1 693 287 39 31 chr12 70165506 70165764 -74116725 + MIR SINE MIR 3 262 0 821 209 0 0 chr12 70166201 70166349 -74116140 - AluJb SINE Alu -30 282 135 188 341 47 0 chr12 70166904 70166989 -74115500 - MIR SINE MIR -31 231 143 8367 40 1 3 chr12 70167557 70168607 -74113882 - L1P LINE L1 -2376 3770 2723 1704 173 11 7 chr12 70169275 70169559 -74112930 - AluJb SINE Alu -26 286 2 548 209 15 127 chr12 70169892 70169971 -74112518 + L1MC5 LINE L1 6737 6823 -1138 2364 130 33 28 chr12 70169971 70170332 -74112157 + THE1B LTR MaLR 1 363 -1 548 209 15 127 chr12 70170332 70170520 -74111969 + L1MC5 LINE L1 6823 6974 -987 2176 122 7 3 chr12 70170520 70170824 -74111665 + AluSq SINE Alu 1 305 -8 5373 72 0 0 chr12 70170940 70171618 -74110871 - L1P LINE L1 -5467 679 2 231 94 38 19 chr12 70172129 70172182 -74110307 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 7379 90 2 0 chr12 70173309 70174314 -74108175 + L1P LINE L1 1178 2184 -3962 1611 172 20 40 chr12 70174415 70174712 -74107777 + AluJb SINE Alu 6 296 -16 844 204 121 0 chr12 70175653 70175859 -74106630 + L1MB8 LINE L1 5943 6173 -5 413 177 0 0 chr12 70175862 70175941 -74106548 + MIR SINE MIR 183 261 -1 438 314 61 9 chr12 70176167 70176396 -74106093 + L1MC4a LINE L1 5694 5934 -1874 348 203 0 0 chr12 70176666 70176725 -74105764 + AluJ/FLAM SINE Alu 1 59 -243 267 114 0 0 chr12 70176969 70177013 -74105476 + (CGG)n Simple_repeat Simple_repeat 3 46 0 205 358 0 9 chr12 70177300 70177409 -74105080 + C-rich Low_complexity Low_complexity 4 111 0 638 318 54 19 chr12 70177948 70178206 -74104283 + HERVL LTR ERVL 4190 4456 -1198 2570 175 21 0 chr12 70178243 70178661 -74103828 - MSTC LTR MaLR 0 428 2 606 315 6 11 chr12 70178662 70178843 -74103646 + HERVL LTR ERVL 4494 4673 -1091 273 177 53 18 chr12 70179282 70179395 -74103094 + (TA)n Simple_repeat Simple_repeat 2 118 0 1933 159 7 0 chr12 70179397 70179693 -74102796 - AluSx SINE Alu -14 298 1 27 81 0 0 chr12 70179719 70179781 -74102708 + AT_rich Low_complexity Low_complexity 1 62 0 986 258 71 27 chr12 70179964 70180332 -74102157 + MER89 LTR ERV1 176 559 0 528 133 0 12 chr12 70180433 70180516 -74101973 - Tigger4(Zombi) DNA MER2_type -2649 82 1 256 16 0 97 chr12 70181199 70181261 -74101228 + (TTAAA)n Simple_repeat Simple_repeat 2 57 0 1836 207 87 14 chr12 70181608 70182033 -74100456 + L1M4c LINE L1 26 481 -5903 878 180 62 7 chr12 70182034 70182212 -74100277 - LTR54 LTR ERV1 0 510 316 1635 192 50 0 chr12 70182212 70182509 -74099980 + AluSx SINE Alu 1 312 0 878 180 62 7 chr12 70182509 70182532 -74099957 - LTR54 LTR ERV1 -194 316 296 460 231 234 26 chr12 70182535 70182837 -74099652 + LTR28 LTR ERV1 1 417 -603 836 130 10 146 chr12 70182991 70183183 -74099306 + AluJb SINE Alu 145 310 -2 360 43 0 0 chr12 70183302 70183348 -74099141 + (TG)n Simple_repeat Simple_repeat 1 46 0 1706 164 20 3 chr12 70183601 70183899 -74098590 + AluJo SINE Alu 6 308 -4 183 80 0 0 chr12 70184161 70184186 -74098303 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2083 246 93 44 chr12 70184585 70185432 -74097057 - L1MC5 LINE L1 -435 7526 6638 314 318 226 37 chr12 70185432 70185728 -74096761 - MLT1G1 LTR MaLR -14 581 230 2084 145 30 52 chr12 70185901 70186352 -74096137 - MER52A LTR ERV1 -1 1277 801 262 242 45 0 chr12 70186465 70186531 -74095958 - L1M4 LINE L1 -1559 4587 4519 * 1926 239 48 22 chr12 70186509 70187112 -74095377 - L1M4 LINE L1 -3139 3007 2389 6777 118 11 0 chr12 70187150 70188146 -74094343 + L1P LINE L1 1326 2332 -3814 3318 143 28 0 chr12 70188146 70188651 -74093838 + L1P LINE L1 1 519 -5627 2135 150 0 0 chr12 70188912 70189218 -74093271 + AluSx SINE Alu 1 306 -6 2115 119 7 7 chr12 70189948 70190250 -74092239 + AluSx SINE Alu 1 302 -10 246 188 87 0 chr12 70190773 70190842 -74091647 - Tigger5 DNA MER2_type -34 2289 2215 806 170 11 93 chr12 70191230 70191412 -74091077 + FRAM SINE Alu 1 166 -10 2061 115 3 11 chr12 70191935 70192272 -74090217 - AluSx SINE Alu 0 335 1 638 102 0 10 chr12 70192528 70192626 -74089863 - L1PB1 LINE L1 0 6151 6055 185 309 86 72 chr12 70192660 70192799 -74089690 - L2 LINE L2 -28 3244 3104 2357 111 0 0 chr12 70193735 70194041 -74088448 - AluSx SINE Alu -6 306 1 480 122 44 22 chr12 70195934 70196024 -74086465 + L1PA8 LINE L1 6079 6170 -2 184 277 107 27 chr12 70196350 70196462 -74086027 + L2 LINE L2 2932 3052 -220 858 130 7 43 chr12 70197061 70197199 -74085290 + FLAM_A SINE Alu 1 133 0 3707 187 49 40 chr12 70197455 70198309 -74084180 + L1MC1 LINE L1 1291 2268 -4158 2391 66 3 13 chr12 70198309 70198612 -74083877 + AluY SINE Alu 1 300 -11 3707 187 49 40 chr12 70198612 70199135 -74083354 + L1MC1 LINE L1 2268 2785 -3641 2231 124 15 0 chr12 70199136 70199593 -74082896 - L1M1 LINE L1 -698 5602 5137 5803 167 24 48 chr12 70199595 70199649 -74082840 + L1MC1 LINE L1 5024 5078 -1535 2447 44 0 10 chr12 70199649 70199947 -74082542 + AluY SINE Alu 1 295 -16 5803 167 24 48 chr12 70199947 70200130 -74082359 + L1MC1 LINE L1 5078 5264 -1349 4306 104 19 27 chr12 70200130 70200766 -74081723 + L1PB1 LINE L1 5514 6144 -7 261 0 0 0 chr12 70200769 70200798 -74081691 + (CA)n Simple_repeat Simple_repeat 2 30 0 5803 167 24 48 chr12 70200798 70202189 -74080300 + L1MC1 LINE L1 5266 6607 -6 765 75 9 9 chr12 70202285 70202415 -74080074 + AluSp/q SINE Alu 191 313 0 411 344 91 0 chr12 70202625 70202855 -74079634 - L2 LINE L2 -613 2701 2451 690 250 115 79 chr12 70202923 70203508 -74078981 - MLT1G1 LTR MaLR -4 591 1 1820 200 64 55 chr12 70203872 70204333 -74078156 - MLT1E2 LTR MaLR 0 626 107 198 227 23 0 chr12 70204623 70204667 -74077822 + L2 LINE L2 3267 3311 -2 2171 69 47 0 chr12 70205033 70205333 -74077156 - AluY SINE Alu 0 313 1 21 0 0 0 chr12 70205343 70205364 -74077125 + AT_rich Low_complexity Low_complexity 1 21 0 1952 170 0 0 chr12 70205475 70205495 -74076994 - AluJo SINE Alu -6 306 287 225 0 0 0 chr12 70205495 70205520 -74076969 + (TG)n Simple_repeat Simple_repeat 2 26 0 1952 170 0 0 chr12 70205520 70205805 -74076684 - AluJo SINE Alu -24 288 1 225 0 0 0 chr12 70206280 70206305 -74076184 + (A)n Simple_repeat Simple_repeat 1 25 0 2517 110 18 34 chr12 70206365 70206746 -74075743 - THE1C LTR MaLR 0 375 1 231 221 25 115 chr12 70206749 70206871 -74075618 - MER104 DNA Tc2 -52 128 18 305 219 133 0 chr12 70206920 70207025 -74075464 + MER112 DNA MER1_type 141 259 -1 377 375 0 0 chr12 70208764 70208940 -74073549 + (TG)n Simple_repeat Simple_repeat 1 176 0 272 83 21 0 chr12 70209498 70209546 -74072943 + (CA)n Simple_repeat Simple_repeat 1 49 0 509 0 16 0 chr12 70209803 70209864 -74072625 + (TC)n Simple_repeat Simple_repeat 1 62 0 272 83 21 0 chr12 70210191 70210239 -74072250 + (CA)n Simple_repeat Simple_repeat 1 49 0 494 16 16 0 chr12 70210496 70210559 -74071930 + (TC)n Simple_repeat Simple_repeat 1 64 0 245 152 17 22 chr12 70210723 70210857 -74071632 + CT-rich Low_complexity Low_complexity 1 133 0 22 35 0 0 chr12 70211285 70211314 -74071175 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr12 70211327 70211350 -74071139 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 70211378 70211399 -74071090 + GC_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr12 70215059 70215086 -74067403 + AT_rich Low_complexity Low_complexity 1 27 0 210 71 0 0 chr12 70216955 70216983 -74065506 + (CTTTG)n Simple_repeat Simple_repeat 2 29 0 390 328 118 26 chr12 70219727 70219956 -74062533 - MIR SINE MIR -11 251 2 201 333 27 13 chr12 70220173 70220248 -74062241 + MIR3 SINE MIR 123 198 -10 625 192 6 6 chr12 70220281 70220437 -74062052 + CT-rich Low_complexity Low_complexity 1 156 0 261 250 0 17 chr12 70220437 70220497 -74061992 - L2 LINE L2 -5 3267 3209 2251 52 0 0 chr12 70221905 70222174 -74060315 + AluY SINE Alu 40 308 -3 361 256 107 33 chr12 70222282 70222403 -74060086 - MIR SINE MIR -113 149 20 856 232 34 61 chr12 70222723 70222986 -74059503 + MIR SINE MIR 7 262 0 198 167 0 0 chr12 70223090 70223126 -74059363 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 297 128 0 0 chr12 70224752 70224799 -74057690 + (T)n Simple_repeat Simple_repeat 1 47 0 1112 321 100 22 chr12 70225460 70225968 -74056521 - L3 LINE CR1 -14 1563 1016 1115 262 45 25 chr12 70225977 70226413 -74056076 - MLT1G LTR MaLR -1 589 109 890 219 92 9 chr12 70227919 70228147 -74054342 + MIR SINE MIR 15 261 -1 405 39 0 0 chr12 70229454 70229505 -74052984 + (CA)n Simple_repeat Simple_repeat 2 52 0 2213 124 0 7 chr12 70229555 70229862 -74052627 + AluSx SINE Alu 1 305 -7 1971 136 7 0 chr12 70231042 70231358 -74051131 - AluSx SINE Alu 0 318 1 193 282 56 14 chr12 70231493 70231564 -74050925 + MIR SINE MIR 65 138 -124 181 190 0 35 chr12 70232849 70232907 -74049582 + (TA)n Simple_repeat Simple_repeat 2 57 0 208 318 32 0 chr12 70233281 70233344 -74049145 + L2 LINE L2 3158 3222 -50 414 303 222 15 chr12 70233357 70233555 -74048934 + MIR SINE MIR 8 246 -16 196 254 18 18 chr12 70233573 70233628 -74048861 + L2 LINE L2 3216 3270 -2 2745 13 0 0 chr12 70234363 70234664 -74047825 + AluYb8 SINE Alu 1 301 -17 2085 92 89 0 chr12 70235525 70235807 -74046682 - AluSq SINE Alu -6 307 1 22 35 0 0 chr12 70236301 70236330 -74046159 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr12 70236499 70236521 -74045968 + AT_rich Low_complexity Low_complexity 1 22 0 434 336 31 35 chr12 70236575 70236831 -74045658 - L3b LINE CR1 -84 1499 1245 330 313 86 8 chr12 70236829 70236957 -74045532 + MIR SINE MIR 17 154 -108 * 2208 113 0 3 chr12 70237020 70237321 -74045168 + AluSq SINE Alu 1 300 -13 663 161 201 0 chr12 70237322 70237471 -74045018 + AluY SINE Alu 126 304 -7 340 278 56 0 chr12 70237643 70237751 -74044738 + MIR SINE MIR 51 164 -98 2084 116 0 20 chr12 70238003 70238297 -74044192 + AluSx SINE Alu 1 288 -24 24 0 0 0 chr12 70238297 70238321 -74044168 + AT_rich Low_complexity Low_complexity 1 24 0 222 136 0 68 chr12 70239540 70239584 -74042905 + MIR SINE MIR 216 256 -6 750 242 9 41 chr12 70240141 70240360 -74042129 - L1MD2 LINE L1 -66 6293 6082 1214 59 13 0 chr12 70240371 70240523 -74041966 - L1PA10 LINE L1 -16 6152 5999 359 89 18 0 chr12 70241191 70241247 -74041242 + (TC)n Simple_repeat Simple_repeat 2 58 0 324 0 0 0 chr12 70241247 70241283 -74041206 + (CA)n Simple_repeat Simple_repeat 1 36 0 438 20 0 0 chr12 70241492 70241543 -74040946 + (ATG)n Simple_repeat Simple_repeat 2 52 0 427 281 62 27 chr12 70242124 70242270 -74040219 - MIR3 SINE MIR -40 168 18 1922 185 46 30 chr12 70242363 70242823 -74039666 - MLT1C LTR MaLR 0 467 1 381 211 13 0 chr12 70245017 70245093 -74037396 - MER94 DNA DNA -57 77 1 1927 123 5 123 chr12 70245518 70245601 -74036888 - MER47A DNA MER2_type -1957 366 275 1714 171 3 30 chr12 70245601 70245924 -74036565 + AluJb SINE Alu 1 312 0 1927 123 5 123 chr12 70245924 70246255 -74036234 - MER47A DNA MER2_type -2048 275 1 257 211 256 11 chr12 70246335 70246425 -74036064 + L2 LINE L2 3197 3308 -5 2021 118 0 4 chr12 70246885 70247194 -74035295 + AluSc SINE Alu 1 308 0 2356 93 0 0 chr12 70247641 70247943 -74034546 - AluSq SINE Alu -11 302 1 285 29 0 0 chr12 70248072 70248106 -74034383 + (CA)n Simple_repeat Simple_repeat 1 34 0 429 159 0 0 chr12 70250656 70250725 -74031764 + Tigger2 DNA MER2_type 1 69 -2649 * 2159 127 71 35 chr12 70250723 70251147 -74031342 + Tigger2 DNA MER2_type 2280 2718 0 2448 76 0 25 chr12 70251426 70251740 -74030749 - AluY SINE Alu -5 306 1 412 290 52 74 chr12 70251946 70252256 -74030233 - L2 LINE L2 -1 3312 3010 187 311 68 14 chr12 70253568 70253642 -74028847 + L2 LINE L2 3134 3211 -61 395 319 159 10 chr12 70255503 70255710 -74026779 - MIR SINE MIR -5 257 20 222 339 92 31 chr12 70255852 70255982 -74026507 - L2 LINE L2 -8 3264 3127 218 322 32 94 chr12 70256157 70256247 -74026242 - L2 LINE L2 -211 3061 2967 2016 98 18 0 chr12 70256247 70256545 -74025944 + AluSx SINE Alu 1 303 0 218 322 32 94 chr12 70256545 70256852 -74025637 - L2 LINE L2 -305 2967 2695 978 207 95 0 chr12 70256961 70257203 -74025286 + MER58B DNA MER1_type 77 341 0 290 359 67 3 chr12 70257943 70258227 -74024262 + L2 LINE L2 1858 2159 -1155 350 352 53 34 chr12 70258436 70258700 -74023789 + L2 LINE L2 2561 2829 -485 203 347 65 24 chr12 70258755 70258879 -74023610 + L2 LINE L2 2925 3053 -219 215 260 26 13 chr12 70259406 70259483 -74023006 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 39 68 0 0 chr12 70260005 70260079 -74022410 + AT_rich Low_complexity Low_complexity 1 74 0 1102 147 0 0 chr12 70261216 70261402 -74021087 - AluSx SINE Alu 0 306 121 324 0 0 0 chr12 70261402 70261438 -74021051 + (T)n Simple_repeat Simple_repeat 1 36 0 329 245 97 62 chr12 70265164 70265370 -74017119 - MIR3 SINE MIR -32 230 5 2093 105 7 26 chr12 70266016 70266322 -74016167 + AluSx SINE Alu 1 300 -12 282 279 27 116 chr12 70266478 70266625 -74015864 + L3 LINE CR1 940 1073 -504 248 257 95 38 chr12 70266692 70266797 -74015692 - L2 LINE L2 -2 3311 3201 537 292 54 16 chr12 70267171 70267356 -74015133 + MIR SINE MIR 20 211 -51 205 211 18 18 chr12 70267573 70267630 -74014859 + (CATATA)n Simple_repeat Simple_repeat 5 61 0 754 142 0 0 chr12 70267971 70268084 -74014405 - AluSx SINE Alu -200 113 1 22 35 0 0 chr12 70270148 70270177 -74012312 + AT_rich Low_complexity Low_complexity 1 29 0 1844 145 3 10 chr12 70271465 70271762 -74010727 - AluJb SINE Alu -16 296 2 251 215 46 0 chr12 70272083 70272148 -74010341 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 337 304 30 15 chr12 70272810 70272945 -74009544 - MIR3 SINE MIR -18 190 54 318 132 0 0 chr12 70273949 70274002 -74008487 + (GGGA)n Simple_repeat Simple_repeat 3 55 0 182 298 205 33 chr12 70274773 70274924 -74007565 - MIR3 SINE MIR -28 180 4 * 757 213 77 19 chr12 70274924 70275104 -74007385 + MIR SINE MIR 70 261 -1 654 218 89 22 chr12 70275698 70275877 -74006612 - MIR SINE MIR -1 261 71 2173 112 0 3 chr12 70276213 70276499 -74005990 - AluSx SINE Alu -27 285 1 1177 191 30 4 chr12 70276516 70276746 -74005743 + MER46A DNA MER2_type 1 236 0 701 233 39 17 chr12 70277094 70277274 -74005215 + MIR SINE MIR 74 257 -5 1134 128 0 10 chr12 70278224 70278420 -74004069 + MER41B LTR ERV1 354 547 -88 2247 105 3 0 chr12 70278683 70278989 -74003500 - AluSg SINE Alu -2 308 2 938 142 8 0 chr12 70279639 70279773 -74002716 + AluSq/x SINE Alu 1 135 -177 1749 130 4 8 chr12 70279773 70280027 -74002462 + AluSx SINE Alu 1 253 -59 25 0 0 0 chr12 70280107 70280132 -74002357 + AT_rich Low_complexity Low_complexity 1 25 0 219 88 0 0 chr12 70280350 70280384 -74002105 + (CA)n Simple_repeat Simple_repeat 1 34 0 1976 120 4 0 chr12 70280507 70280782 -74001707 + AluSx SINE Alu 1 276 -36 207 100 0 0 chr12 70281393 70281423 -74001066 + (TC)n Simple_repeat Simple_repeat 2 31 0 1215 116 43 5 chr12 70281976 70282183 -74000306 - L1MA3 LINE L1 -1 6304 6090 2201 106 0 13 chr12 70282561 70282864 -73999625 + AluSq SINE Alu 1 299 -14 289 245 133 70 chr12 70283532 70283646 -73998843 - MIR SINE MIR -5 257 131 2562 61 0 0 chr12 70283646 70283956 -73998533 + AluY SINE Alu 1 310 -1 289 245 133 70 chr12 70283956 70283984 -73998505 - MIR SINE MIR -131 131 106 2941 184 46 88 chr12 70285679 70286637 -73995852 - MER63C DNA MER1_type -2 928 11 188 306 20 0 chr12 70287166 70287215 -73995274 - L2 LINE L2 -12 3260 3211 236 26 0 53 chr12 70287937 70287975 -73994514 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 202 303 125 46 chr12 70288985 70289137 -73993352 - MIR3 SINE MIR -30 178 15 2094 92 0 0 chr12 70289677 70289937 -73992552 + AluSx SINE Alu 35 294 -18 216 0 0 0 chr12 70290066 70290090 -73992399 + (CA)n Simple_repeat Simple_repeat 1 24 0 281 191 29 0 chr12 70290158 70290226 -73992263 - MER116 DNA Mariner -4 76 7 452 283 120 19 chr12 70290612 70290870 -73991619 - L1ME4a LINE L1 -11 6110 5827 183 214 0 0 chr12 70291863 70291905 -73990584 - L2 LINE L2 -18 3254 3213 2222 89 0 54 chr12 70291999 70292315 -73990174 + AluSg SINE Alu 2 300 -10 25 0 0 0 chr12 70297062 70297087 -73985402 + AT_rich Low_complexity Low_complexity 1 25 0 195 281 19 131 chr12 70297553 70297713 -73984776 + MIR SINE MIR 14 155 -107 547 306 102 22 chr12 70298230 70298505 -73983984 - L3b LINE CR1 -135 1448 1152 465 269 74 46 chr12 70298510 70298685 -73983804 + MIR SINE MIR 4 183 -25 5720 17 0 0 chr12 70298884 70299537 -73982952 + L1PA2 LINE L1 5500 6152 -3 2231 106 0 0 chr12 70299549 70299858 -73982631 - AluSq SINE Alu 0 309 1 461 291 81 27 chr12 70300206 70300354 -73982135 - MER91A DNA MER1_type -6 190 35 419 313 77 42 chr12 70301798 70302226 -73980263 - L2 LINE L2 -927 2387 1945 200 274 0 48 chr12 70302505 70302567 -73979922 + GA-rich Low_complexity Low_complexity 3 61 0 2822 63 3 0 chr12 70305353 70305703 -73976786 + THE1A LTR MaLR 1 351 -4 11811 91 1 9 chr12 70305711 70306137 -73976352 + THE1A-int LTR MaLR 1 429 -1151 2312 58 41 0 chr12 70306137 70306429 -73976060 - AluY SINE Alu -6 305 2 11811 91 1 9 chr12 70306429 70307593 -73974896 + THE1A-int LTR MaLR 429 1578 -2 2657 80 14 0 chr12 70307595 70307945 -73974544 + THE1A LTR MaLR 1 355 0 2177 103 6 6 chr12 70308612 70308923 -73973566 + AluSp SINE Alu 2 312 -1 23 0 0 0 chr12 70309117 70309140 -73973349 + AT_rich Low_complexity Low_complexity 1 23 0 210 37 0 0 chr12 70309334 70309361 -73973128 + (CA)n Simple_repeat Simple_repeat 2 28 0 2145 111 0 7 chr12 70309399 70309696 -73972793 + AluSc SINE Alu 1 295 -14 26 0 0 0 chr12 70310002 70310028 -73972461 + AT_rich Low_complexity Low_complexity 1 26 0 183 365 0 27 chr12 70310437 70310511 -73971978 + L2 LINE L2 3200 3271 -1 293 298 19 37 chr12 70312454 70312570 -73969919 - MIR SINE MIR -73 135 33 192 97 0 0 chr12 70312677 70312708 -73969781 + (TC)n Simple_repeat Simple_repeat 2 32 0 189 0 0 0 chr12 70312715 70312736 -73969753 + (TG)n Simple_repeat Simple_repeat 2 22 0 24 53 0 0 chr12 70312736 70312774 -73969715 + AT_rich Low_complexity Low_complexity 1 38 0 332 247 0 52 chr12 70312780 70312877 -73969612 - L1MC4 LINE L1 -1339 6703 6612 4518 105 19 12 chr12 70312900 70313640 -73968849 - Tigger3(Golem) DNA MER2_type -1 3028 2284 695 188 0 0 chr12 70313631 70313748 -73968741 - Tigger3(Golem) DNA MER2_type -2912 117 1 * 291 54 0 0 chr12 70313829 70313866 -73968623 + (TATG)n Simple_repeat Simple_repeat 2 38 0 306 125 28 14 chr12 70314322 70314394 -73968095 + (TA)n Simple_repeat Simple_repeat 1 73 0 196 274 0 20 chr12 70314457 70314508 -73967981 - L3 LINE CR1 -4 1573 1524 390 57 0 0 chr12 70316430 70316483 -73966006 + (TG)n Simple_repeat Simple_repeat 2 54 0 800 141 0 16 chr12 70316687 70316815 -73965674 + FRAM SINE Alu 39 164 -12 190 250 0 0 chr12 70317317 70317353 -73965136 - L2 LINE L2 -18 3254 3219 * 291 279 0 0 chr12 70317352 70317413 -73965076 + L2 LINE L2 3211 3271 -1 22 0 0 0 chr12 70320666 70320688 -73961801 + AT_rich Low_complexity Low_complexity 1 22 0 318 286 152 37 chr12 70321573 70321790 -73960699 - MIR SINE MIR -10 252 11 32 0 0 0 chr12 70321995 70322027 -73960462 + AT_rich Low_complexity Low_complexity 1 32 0 401 262 79 12 chr12 70323087 70323251 -73959238 + MLT1L LTR MaLR 428 602 -13 1470 154 3 63 chr12 70323523 70323808 -73958681 - AluJb SINE Alu -6 306 39 2240 114 0 0 chr12 70324239 70324538 -73957951 - AluSx SINE Alu -13 299 1 294 227 0 0 chr12 70325661 70325736 -73956753 + (TA)n Simple_repeat Simple_repeat 1 75 0 183 156 0 0 chr12 70325818 70325850 -73956639 + (TAA)n Simple_repeat Simple_repeat 3 34 0 6073 74 6 0 chr12 70326474 70327335 -73955154 - L1P3 LINE L1 -1067 5079 4214 2235 58 13 1 chr12 70327326 70327796 -73954693 + L1P3 LINE L1 5090 5562 -592 * 183 205 0 0 chr12 70329577 70329616 -73952873 + (TATG)n Simple_repeat Simple_repeat 2 40 0 227 266 180 23 chr12 70330281 70330409 -73952080 + L2 LINE L2 3165 3312 -1 330 216 14 0 chr12 70331863 70331937 -73950552 + MER116 DNA Mariner 4 78 -2 997 196 18 0 chr12 70332038 70332206 -73950283 - FAM SINE Alu -4 171 1 21 0 0 0 chr12 70333668 70333689 -73948800 + AT_rich Low_complexity Low_complexity 1 21 0 1774 158 65 0 chr12 70334143 70334421 -73948068 - AluJo SINE Alu -16 296 1 212 260 19 104 chr12 70334818 70334972 -73947517 + L3 LINE CR1 585 725 -852 204 128 0 26 chr12 70335563 70335602 -73946887 + (CAAAAA)n Simple_repeat Simple_repeat 6 43 0 4204 176 33 25 chr12 70336771 70337758 -73944731 + L1MB8 LINE L1 5170 6178 0 1801 152 7 7 chr12 70337952 70338248 -73944241 - AluJb SINE Alu -16 296 1 23 54 0 0 chr12 70338655 70338692 -73943797 + AT_rich Low_complexity Low_complexity 1 37 0 953 167 70 5 chr12 70339957 70340143 -73942346 - MER63A DNA MER1_type 0 210 13 352 263 91 10 chr12 70340153 70340252 -73942237 - MER5B DNA MER1_type -66 112 6 224 222 95 0 chr12 70341102 70341165 -73941324 + MIR SINE MIR 92 160 -102 1811 115 84 14 chr12 70341942 70342228 -73940261 + AluSg SINE Alu 1 306 -4 980 96 0 22 chr12 70344377 70344512 -73937977 + FLAM_C SINE Alu 1 132 -11 2478 78 0 0 chr12 70346900 70347208 -73935281 - AluY SINE Alu -3 308 1 294 29 0 0 chr12 70348758 70348793 -73933696 + (TG)n Simple_repeat Simple_repeat 1 35 0 337 278 93 45 chr12 70349632 70349786 -73932703 + MIR SINE MIR 9 170 -38 302 87 0 22 chr12 70350420 70350466 -73932023 + (GGGTG)n Simple_repeat Simple_repeat 3 47 0 255 133 0 0 chr12 70351332 70351377 -73931112 + (TC)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr12 70351755 70351782 -73930707 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr12 70352134 70352163 -73930326 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr12 70352911 70352941 -73929548 + AT_rich Low_complexity Low_complexity 1 30 0 1036 188 0 12 chr12 70354292 70354462 -73928027 + FAM SINE Alu 6 173 -12 909 312 35 48 chr12 70355627 70355689 -73926800 - MLT1K LTR MaLR 0 588 527 207 0 0 0 chr12 70355689 70355712 -73926777 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 909 312 35 48 chr12 70355712 70356110 -73926379 - MLT1K LTR MaLR -61 527 134 450 267 35 0 chr12 70356600 70356724 -73925765 - MIR SINE MIR -64 144 35 278 305 135 53 chr12 70357395 70357863 -73924626 + L2 LINE L2 2531 3060 -212 1744 157 48 45 chr12 70357898 70358230 -73924259 + MER1B DNA MER1_type 1 333 -4 2106 139 117 2 chr12 70358252 70358655 -73923834 - L1PB4 LINE L1 0 6742 6294 242 224 60 60 chr12 70358745 70358861 -73923628 + L2 LINE L2 3156 3271 -1 791 274 90 53 chr12 70359304 70359760 -73922729 + MLT1K LTR MaLR 4 476 0 283 267 80 131 chr12 70359835 70360011 -73922478 + MIR3 SINE MIR 40 206 -2 5839 138 34 85 chr12 70360409 70361200 -73921289 - L1PB4 LINE L1 -842 5890 5060 357 24 0 0 chr12 70361200 70361242 -73921247 + (TG)n Simple_repeat Simple_repeat 1 42 0 5839 138 34 85 chr12 70361242 70361418 -73921071 - L1PB4 LINE L1 -1672 5060 4877 2223 78 4 4 chr12 70361418 70361699 -73920790 + AluSp SINE Alu 1 281 -32 5839 138 34 85 chr12 70361699 70362160 -73920329 - L1PB4 LINE L1 -1855 4877 4500 6648 250 49 20 chr12 70362162 70362222 -73920267 - L1PB4 LINE L1 -3045 3687 3630 354 23 0 0 chr12 70362222 70362265 -73920224 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 6648 250 49 20 chr12 70362265 70362372 -73920117 - L1PB4 LINE L1 -3102 3630 3528 3408 125 26 6 chr12 70362372 70362876 -73919613 - MER75 DNA T2_type 0 514 1 6648 250 49 20 chr12 70362876 70363053 -73919436 - L1PB4 LINE L1 -3204 3528 3358 603 214 0 64 chr12 70363053 70363193 -73919296 + FLAM_A SINE Alu 1 131 -2 6648 250 49 20 chr12 70363193 70365305 -73917184 - L1PB4 LINE L1 -3374 3358 1451 2173 75 30 37 chr12 70365305 70365600 -73916889 - AluSc SINE Alu -16 293 1 6648 250 49 20 chr12 70365600 70366460 -73916029 - L1PB4 LINE L1 -5281 1451 618 1162 72 33 0 chr12 70366464 70366616 -73915873 + BC200 scRNA scRNA 2 158 -42 726 237 22 117 chr12 70366633 70366677 -73915812 - L1PB4 LINE L1 -6076 577 530 2066 96 7 0 chr12 70366677 70366981 -73915508 - AluSx SINE Alu 0 314 9 726 237 22 117 chr12 70366981 70366993 -73915496 - L1PB4 LINE L1 -6123 530 518 2054 134 7 0 chr12 70366993 70367320 -73915169 - AluSx SINE Alu 0 329 1 726 237 22 117 chr12 70367320 70367536 -73914953 - L1PB4 LINE L1 -6135 518 31 * 1497 250 94 70 chr12 70367516 70367913 -73914576 - L1M3de LINE L1 -5863 790 404 1816 147 7 17 chr12 70367913 70368206 -73914283 + AluJo SINE Alu 11 300 -12 1497 250 94 70 chr12 70368206 70368333 -73914156 - L1M3de LINE L1 -6249 404 282 2166 125 0 0 chr12 70368333 70368629 -73913860 - AluSx SINE Alu -14 298 3 1497 250 94 70 chr12 70368629 70368812 -73913677 - L1M3de LINE L1 -6371 282 8 347 345 40 18 chr12 70368841 70369116 -73913373 - L1M3d LINE L1 -5610 281 1 1248 226 81 52 chr12 70369135 70369543 -73912946 - HsTC2a DNA Tc2 -321 423 4 3017 132 14 2 chr12 70369574 70369997 -73912492 + MSTA LTR MaLR 1 428 0 2403 64 0 10 chr12 70373408 70373703 -73908786 + AluY SINE Alu 17 308 -3 214 319 62 21 chr12 70374408 70374552 -73907937 + L2 LINE L2 2891 3040 -232 371 288 68 31 chr12 70374692 70374883 -73907606 - MIR SINE MIR -50 212 15 3175 177 66 62 chr12 70375916 70376281 -73906208 + LTR8A LTR ERV1 1 363 -364 2296 82 31 0 chr12 70376281 70376573 -73905916 - AluY SINE Alu -10 301 1 3175 177 66 62 chr12 70376573 70376931 -73905558 + LTR8A LTR ERV1 363 727 0 751 168 15 29 chr12 70377380 70377517 -73904972 - FLAM_A SINE Alu -6 136 2 431 226 109 15 chr12 70378692 70378829 -73903660 + MIR SINE MIR 81 230 -32 257 152 0 0 chr12 70378896 70378942 -73903547 + FAM SINE Alu 128 173 -6 1747 167 0 7 chr12 70378942 70379235 -73903254 - AluJb SINE Alu -21 291 1 1222 123 5 66 chr12 70379235 70379446 -73903043 + AluJb SINE Alu 115 312 0 911 78 0 0 chr12 70382868 70382983 -73899506 + L1MA3 LINE L1 6191 6305 0 2311 113 139 16 chr12 70383594 70383936 -73898553 + MSTA LTR MaLR 1 397 -31 2181 79 22 4 chr12 70383936 70384257 -73898232 - AluY SINE Alu 0 326 1 2311 113 139 16 chr12 70384257 70384294 -73898195 + MSTA LTR MaLR 397 428 0 220 336 45 27 chr12 70384389 70384499 -73897990 - MER5B DNA MER1_type 0 178 67 22 0 0 73 chr12 70384611 70384652 -73897837 + AT_rich Low_complexity Low_complexity 1 38 0 2521 159 23 11 chr12 70384652 70385092 -73897397 - Tigger2 DNA MER2_type -1 2717 2273 384 183 0 28 chr12 70385082 70385153 -73897336 - Tigger2 DNA MER2_type -2649 69 1 * 199 296 184 0 chr12 70385298 70385423 -73897066 - MIR SINE MIR -46 216 69 207 0 0 0 chr12 70385465 70385488 -73897001 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2141 139 0 3 chr12 70385969 70386279 -73896210 + AluSg SINE Alu 1 309 -1 22 35 0 0 chr12 70387105 70387134 -73895355 + AT_rich Low_complexity Low_complexity 1 29 0 2223 99 10 0 chr12 70389318 70389620 -73892869 + AluY SINE Alu 1 305 -6 2228 102 7 0 chr12 70391339 70391633 -73890856 + AluSq SINE Alu 1 296 -17 1639 135 6 67 chr12 70391644 70391971 -73890518 - L1MB3 LINE L1 -21 6162 5856 1647 167 10 39 chr12 70392156 70392461 -73890028 + AluJb SINE Alu 1 296 -16 1809 143 44 0 chr12 70392576 70392848 -73889641 + AluJb SINE Alu 3 286 -26 984 292 119 56 chr12 70393017 70393531 -73888958 - MLT1H1 LTR MaLR 0 555 10 649 232 122 53 chr12 70393676 70393939 -73888550 + MLT1J LTR MaLR 229 509 -2 2119 135 3 0 chr12 70394038 70394342 -73888147 + AluSx SINE Alu 1 305 -7 383 276 40 53 chr12 70394566 70394718 -73887771 - L2 LINE L2 -219 3053 2904 257 238 0 32 chr12 70394791 70394854 -73887635 + MIR SINE MIR 48 108 -154 193 329 61 0 chr12 70394926 70395008 -73887481 - L2 LINE L2 -609 2705 2619 * 894 318 111 24 chr12 70395006 70395237 -73887252 - L2 LINE L2 -5 3308 3099 1258 175 0 0 chr12 70395237 70395443 -73887046 + L1PB4 LINE L1 5950 6155 -1 894 318 111 24 chr12 70395443 70395636 -73886853 - L2 LINE L2 -214 3099 2847 455 332 102 35 chr12 70395613 70395986 -73886503 - L2 LINE L2 -680 2634 2237 * 540 216 344 4 chr12 70396034 70396177 -73886312 - L2 LINE L2 0 3313 3220 2172 110 7 7 chr12 70396177 70396486 -73886003 + AluSc SINE Alu 1 309 0 540 216 344 4 chr12 70396486 70396601 -73885888 - L2 LINE L2 -93 3220 2967 1910 134 30 20 chr12 70396765 70397064 -73885425 + AluSx SINE Alu 1 302 -10 1971 122 10 10 chr12 70397168 70397463 -73885026 - AluSx SINE Alu -17 295 1 2298 116 0 0 chr12 70397839 70398142 -73884347 - AluSg SINE Alu -7 303 1 235 267 0 0 chr12 70401487 70401554 -73880935 + polypyrimidine Low_complexity Low_complexity 1 67 0 1284 251 180 30 chr12 70402316 70402822 -73879667 + MLT1G1 LTR MaLR 8 589 -6 21 0 0 0 chr12 70403239 70403260 -73879229 + AT_rich Low_complexity Low_complexity 1 21 0 256 33 0 0 chr12 70404170 70404200 -73878289 + LTR6A LTR ERV1 73 102 -462 395 311 144 50 chr12 70404298 70404520 -73877969 - L3 LINE CR1 -1 1576 1334 551 337 128 0 chr12 70405015 70405398 -73877091 - L3 LINE CR1 -244 1333 902 213 312 97 0 chr12 70405724 70405817 -73876672 - L3 LINE CR1 -922 655 554 443 336 48 80 chr12 70405827 70406178 -73876311 + L2 LINE L2 2929 3268 -4 321 291 215 27 chr12 70406194 70406417 -73876072 - L3 LINE CR1 -44 1533 1269 300 27 0 0 chr12 70407020 70407057 -73875432 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 635 352 23 6 chr12 70407144 70407381 -73875108 - MIR SINE MIR -21 241 3 2016 104 55 0 chr12 70407639 70407928 -73874561 - AluSx SINE Alu -6 306 2 1030 227 21 0 chr12 70408180 70408374 -73874115 + MER58A DNA MER1_type 27 224 0 236 183 100 17 chr12 70408442 70408502 -73873987 + L3 LINE CR1 1495 1559 -18 231 36 0 0 chr12 70409197 70409225 -73873264 + (T)n Simple_repeat Simple_repeat 1 28 0 26 50 0 0 chr12 70409393 70409433 -73873056 + AT_rich Low_complexity Low_complexity 1 40 0 2414 54 10 3 chr12 70409985 70410282 -73872207 + AluY SINE Alu 1 299 -12 180 0 0 0 chr12 70412839 70412859 -73869630 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1994 141 3 0 chr12 70412947 70413244 -73869245 + AluSx SINE Alu 1 298 -14 400 241 121 42 chr12 70413386 70413552 -73868937 + MLT1G LTR MaLR 107 285 -305 490 297 8 0 chr12 70413781 70413899 -73868590 + MLT1G LTR MaLR 412 530 -60 460 172 0 46 chr12 70414159 70414246 -73868243 - AluJ/FRAM SINE Alu -14 298 216 1067 296 88 19 chr12 70414460 70414893 -73867596 + L2 LINE L2 2818 3280 -33 239 206 59 15 chr12 70415333 70415401 -73867088 + MLT1J LTR MaLR 110 180 -331 264 319 11 11 chr12 70415708 70415802 -73866687 + MLT1L LTR MaLR 346 439 -176 2216 94 17 3 chr12 70415805 70416102 -73866387 + AluSg SINE Alu 3 303 -7 1961 117 4 29 chr12 70416117 70416398 -73866091 + AluSx SINE Alu 1 274 -38 249 83 0 0 chr12 70416400 70416436 -73866053 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 1377 122 5 36 chr12 70418584 70418806 -73863683 - Tigger5 DNA MER2_type -70 2253 2039 884 148 0 7 chr12 70419300 70419435 -73863054 + AluJb SINE Alu 164 297 -15 251 299 39 0 chr12 70420138 70420215 -73862274 - L2 LINE L2 -46 3226 3147 383 335 32 11 chr12 70420336 70420524 -73861965 - L3 LINE CR1 -199 1378 1187 1591 183 3 37 chr12 70420541 70420841 -73861648 - AluJb SINE Alu -22 290 1 873 273 122 46 chr12 70420897 70421358 -73861131 - MLT1J LTR MaLR -15 496 1 782 257 106 60 chr12 70422205 70422656 -73859833 - MLT1J LTR MaLR -1 510 39 180 77 0 0 chr12 70423084 70423110 -73859379 + (TTG)n Simple_repeat Simple_repeat 3 28 0 658 147 0 0 chr12 70423115 70423210 -73859279 - FRAM SINE Alu -21 155 61 261 119 0 0 chr12 70423229 70423271 -73859218 + (A)n Simple_repeat Simple_repeat 1 42 0 338 144 25 4 chr12 70423380 70423462 -73859027 + L1MA7 LINE L1 6205 6300 0 330 206 88 15 chr12 70423487 70423623 -73858866 + Zaphod DNA AcHobo 617 762 -3269 1491 89 5 5 chr12 70423983 70424186 -73858303 - L1PA13 LINE L1 0 6163 5961 639 75 0 0 chr12 70424481 70424575 -73857914 + (CA)n Simple_repeat Simple_repeat 2 95 0 386 261 63 0 chr12 70424645 70424756 -73857733 + MIR SINE MIR 70 187 -75 302 264 221 0 chr12 70424974 70425137 -73857352 - MIR SINE MIR -10 252 54 1813 198 55 31 chr12 70425164 70425680 -73856809 + MLT1E3 LTR MaLR 1 623 -1 2155 143 122 13 chr12 70425903 70426289 -73856200 - MSTA LTR MaLR 0 428 1 1971 177 19 16 chr12 70427326 70427693 -73854796 + MER63B DNA MER1_type 1 368 -68 812 188 0 0 chr12 70428903 70429074 -73853415 + FLAM_C SINE Alu 1 171 0 23 54 0 0 chr12 70429340 70429377 -73853112 + AT_rich Low_complexity Low_complexity 1 37 0 253 183 50 17 chr12 70430136 70430196 -73852293 - Charlie8 DNA MER1_type -2318 99 38 22 0 0 0 chr12 70430242 70430264 -73852225 + AT_rich Low_complexity Low_complexity 1 22 0 253 167 121 0 chr12 70430282 70430348 -73852141 - MIR SINE MIR -14 248 175 2797 267 132 52 chr12 70430577 70431650 -73850839 - HERV16 LTR ERVL -3109 1887 559 1540 219 3 7 chr12 70431650 70431960 -73850529 - AluJb SINE Alu -2 310 2 2797 267 132 52 chr12 70431960 70432567 -73849922 - HERV16 LTR ERVL -4437 559 2 1849 269 22 16 chr12 70432568 70433015 -73849474 - LTR16A LTR ERVL 0 450 1 222 332 99 58 chr12 70433139 70433362 -73849127 + L2 LINE L2 2817 3048 -224 627 293 58 15 chr12 70433453 70433658 -73848831 + MIR SINE MIR 19 232 -30 1462 201 80 0 chr12 70434089 70434408 -73848081 + MLT1F1 LTR MaLR 1 374 -193 2876 121 15 5 chr12 70434411 70434823 -73847666 + MER57B LTR ERV1 4 419 -15 518 215 0 0 chr12 70434825 70434918 -73847571 + MLT1F1 LTR MaLR 372 464 -103 198 0 0 0 chr12 70435854 70435876 -73846613 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 312 333 48 0 chr12 70436305 70436431 -73846058 - MIR SINE MIR -35 227 96 225 0 0 0 chr12 70436994 70437019 -73845470 + (T)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr12 70437117 70437146 -73845343 + AT_rich Low_complexity Low_complexity 1 29 0 426 307 126 57 chr12 70437972 70438330 -73844159 - MLT1J LTR MaLR -17 494 96 1826 135 6 68 chr12 70438330 70438656 -73843833 - AluSx SINE Alu -6 306 1 426 307 126 57 chr12 70438656 70438756 -73843733 - MLT1J LTR MaLR -415 96 4 2026 138 3 0 chr12 70439325 70439629 -73842860 + AluSp SINE Alu 1 305 -8 233 200 73 0 chr12 70439682 70439737 -73842752 + MIR SINE MIR 156 214 -48 2075 38 88 4 chr12 70439813 70440108 -73842381 + AluY SINE Alu 1 317 0 1887 171 0 0 chr12 70440271 70440564 -73841925 - AluJo SINE Alu -19 293 1 1821 128 3 56 chr12 70442681 70442987 -73839502 - AluJb SINE Alu -22 290 1 1608 201 71 71 chr12 70443037 70443504 -73838985 + MLT1C LTR MaLR 1 467 0 258 238 0 33 chr12 70443974 70444096 -73838393 + GA-rich Low_complexity Low_complexity 3 120 0 209 309 64 0 chr12 70445335 70445429 -73837060 + L2 LINE L2 2779 2878 -436 267 338 69 28 chr12 70445560 70445705 -73836784 + L2 LINE L2 3115 3265 -7 1463 176 6 60 chr12 70445921 70446239 -73836250 + AluJo SINE Alu 1 301 -11 318 219 14 14 chr12 70447139 70447212 -73835277 - MIR SINE MIR -27 235 163 204 258 52 52 chr12 70447527 70447624 -73834865 + L2 LINE L2 2824 2920 -352 204 250 0 0 chr12 70447970 70448018 -73834471 + (TA)n Simple_repeat Simple_repeat 1 48 0 318 232 21 32 chr12 70448018 70448113 -73834376 - LTR67 LTR ERVL -16 541 448 671 293 105 31 chr12 70448118 70448507 -73833982 - LTR16C LTR ERVL 0 491 74 2370 134 27 8 chr12 70448832 70449197 -73833292 + L1PA16 LINE L1 5794 6165 -1 2318 80 7 0 chr12 70449453 70449742 -73832747 + AluY SINE Alu 1 291 -20 209 235 294 0 chr12 70450052 70450137 -73832352 - L2 LINE L2 -1 3312 3203 2149 113 0 10 chr12 70450636 70450936 -73831553 + AluSx SINE Alu 3 299 -13 2191 72 32 0 chr12 70450938 70451239 -73831250 + AluY SINE Alu 1 310 0 32 0 0 0 chr12 70451239 70451271 -73831218 + AT_rich Low_complexity Low_complexity 1 32 0 1686 166 24 24 chr12 70451559 70451855 -73830634 - AluJo SINE Alu -16 296 1 488 280 86 17 chr12 70452190 70452422 -73830067 + L1MC4a LINE L1 5593 5840 -1968 21 0 0 0 chr12 70452698 70452719 -73829770 + AT_rich Low_complexity Low_complexity 1 21 0 4014 179 36 8 chr12 70452992 70453722 -73828767 - L1MB8 LINE L1 -1 6177 5428 205 29 59 0 chr12 70454437 70454471 -73828018 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 994 293 62 31 chr12 70454968 70455453 -73827036 + LTR33 LTR ERVL 22 521 0 189 0 0 0 chr12 70455763 70455784 -73826705 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 26 0 0 0 chr12 70456053 70456079 -73826410 + AT_rich Low_complexity Low_complexity 1 26 0 7129 166 36 24 chr12 70456283 70457700 -73824789 + L1MCa LINE L1 242 1675 -4751 2484 50 33 0 chr12 70457812 70458193 -73824296 + L1PA7 LINE L1 5728 6158 0 2102 108 49 0 chr12 70458287 70458575 -73823914 + AluSx SINE Alu 1 302 -10 560 266 68 62 chr12 70459156 70459294 -73823195 - L2 LINE L2 -1 3312 3176 815 131 8 0 chr12 70459294 70459416 -73823073 + L1MA1 LINE L1 6180 6302 0 560 266 68 62 chr12 70459416 70459600 -73822889 - L2 LINE L2 -137 3176 2988 304 162 27 95 chr12 70460347 70460421 -73822068 + MIR SINE MIR 194 262 0 598 260 33 51 chr12 70460490 70460763 -73821726 - HAL1 LINE L1 -10 2497 2230 1693 150 21 24 chr12 70460805 70461092 -73821397 - AluJo SINE Alu -26 286 1 840 212 117 38 chr12 70461093 70461357 -73821132 - L2 LINE L2 -8 3305 3021 620 112 56 5 chr12 70461379 70461504 -73820985 - L1P3 LINE L1 -4811 1650 1513 418 272 13 19 chr12 70461480 70461638 -73820851 - HAL1 LINE L1 -1227 1595 1439 * 17582 41 4 1 chr12 70461635 70465560 -73816929 + L1PA5 LINE L1 2212 6141 -13 522 0 0 0 chr12 70465566 70465624 -73816865 + (TA)n Simple_repeat Simple_repeat 2 59 0 225 94 0 0 chr12 70465640 70465672 -73816817 + (A)n Simple_repeat Simple_repeat 1 32 0 371 222 89 82 chr12 70465700 70465835 -73816654 + L2 LINE L2 3137 3272 0 2972 109 7 0 chr12 70466313 70466744 -73815745 - MER57B LTR ERV1 0 434 1 1437 90 116 9 chr12 70466746 70466979 -73815510 - MER57B-int LTR ERV1 -2 7535 7278 658 185 15 0 chr12 70466979 70467109 -73815380 - LTR54B LTR ERV1 -364 134 3 20453 115 37 45 chr12 70467109 70467921 -73814568 - MER57-int LTR ERV1 -391 7146 6329 2129 112 14 3 chr12 70467921 70468217 -73814272 - AluSc SINE Alu -10 299 1 20453 115 37 45 chr12 70468217 70470471 -73812018 - MER57-int LTR ERV1 -1208 6329 3621 1723 177 0 39 chr12 70470471 70470781 -73811708 - AluSx SINE Alu -14 298 1 20453 115 37 45 chr12 70470781 70471996 -73810493 - MER57-int LTR ERV1 -3916 3621 2397 1239 291 41 26 chr12 70471996 70472502 -73809987 - L2 LINE L2 -349 2923 2412 259 219 0 55 chr12 70472586 70472659 -73809830 + Zaphod DNA AcHobo 174 242 -3789 1307 127 52 5 chr12 70472678 70472890 -73809599 - MER30 DNA MER1_type -6 224 3 696 278 46 66 chr12 70472896 70473378 -73809111 + Zaphod DNA AcHobo 286 757 -3274 31 26 0 0 chr12 70473544 70473582 -73808907 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr12 70473669 70473694 -73808795 + AT_rich Low_complexity Low_complexity 1 25 0 497 191 158 95 chr12 70473771 70474170 -73808319 + Zaphod DNA AcHobo 3595 4018 -13 205 288 0 34 chr12 70474190 70474249 -73808240 - L2 LINE L2 -188 3084 3028 564 136 0 0 chr12 70474631 70474712 -73807777 - AluSg/x SINE Alu -24 285 205 2445 92 3 0 chr12 70474787 70475092 -73807397 - AluSp SINE Alu -7 306 1 29 28 0 0 chr12 70475151 70475187 -73807302 + AT_rich Low_complexity Low_complexity 1 36 0 298 314 49 10 chr12 70475345 70475447 -73807042 - MIR SINE MIR -125 137 32 651 330 5 0 chr12 70476010 70476201 -73806288 + MER91A DNA MER1_type 3 194 -2 1060 156 73 60 chr12 70476325 70476622 -73805867 + MER33 DNA MER1_type 2 305 -2280 2446 148 7 59 chr12 70476622 70477080 -73805409 + Tigger2a DNA MER2_type 1 434 0 1060 156 73 60 chr12 70477080 70477097 -73805392 + MER33 DNA MER1_type 305 320 -4 221 289 123 53 chr12 70477103 70477169 -73805320 + MIR SINE MIR 33 93 -169 186 71 0 0 chr12 70477169 70477197 -73805292 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2003 126 0 14 chr12 70477201 70477486 -73805003 - AluSx SINE Alu -31 281 1 221 289 123 53 chr12 70477486 70477601 -73804888 + MIR SINE MIR 95 232 -30 2112 113 0 3 chr12 70477771 70478063 -73804426 - AluSx SINE Alu -4 308 18 294 253 158 63 chr12 70479417 70479575 -73802914 - L2 LINE L2 0 3313 3141 970 263 55 30 chr12 70479589 70479954 -73802535 + MLT1I LTR MaLR 12 385 -24 1011 271 43 28 chr12 70479968 70480314 -73802175 - L2 LINE L2 -169 3144 2795 289 318 67 71 chr12 70480398 70480905 -73801584 + L2 LINE L2 2457 2961 -353 196 298 0 0 chr12 70482842 70482889 -73799600 + MER5B DNA MER1_type 3 49 -129 201 108 0 0 chr12 70482889 70482926 -73799563 + (T)n Simple_repeat Simple_repeat 1 37 0 495 0 0 0 chr12 70482931 70482986 -73799503 + (TG)n Simple_repeat Simple_repeat 2 56 0 1082 222 18 5 chr12 70483368 70483589 -73798900 + MER58A DNA MER1_type 1 224 0 338 256 31 23 chr12 70483785 70483914 -73798575 + MLT1L LTR MaLR 446 575 -40 248 154 19 0 chr12 70484316 70484368 -73798121 + GA-rich Low_complexity Low_complexity 2 54 0 673 294 91 47 chr12 70484382 70485497 -73796992 + L1M4 LINE L1 3945 5108 -1038 198 0 0 0 chr12 70485554 70485576 -73796913 + (T)n Simple_repeat Simple_repeat 1 22 0 661 302 47 3 chr12 70486098 70486519 -73795970 + L1P4 LINE L1 5254 5724 -437 1983 142 0 0 chr12 70486572 70486860 -73795629 + AluSx SINE Alu 1 288 -24 23 0 0 0 chr12 70486995 70487018 -73795471 + AT_rich Low_complexity Low_complexity 1 23 0 1475 228 98 41 chr12 70487385 70487877 -73794612 + MLT2B1 LTR ERVL 1 520 0 28 29 0 0 chr12 70488043 70488078 -73794411 + AT_rich Low_complexity Low_complexity 1 35 0 2884 217 15 20 chr12 70488086 70488740 -73793749 - MER82 DNA MER2_type 0 653 3 1547 201 14 10 chr12 70488741 70489034 -73793455 + AluJo SINE Alu 2 295 -17 1006 139 6 6 chr12 70489038 70489218 -73793271 + GA-rich Low_complexity Low_complexity 1 180 0 1654 221 12 12 chr12 70489665 70490073 -73792416 + LTR52 LTR ERVL 11 418 -3 2066 133 0 0 chr12 70490237 70490515 -73791974 + AluSx SINE Alu 3 280 -32 207 0 0 0 chr12 70490515 70490538 -73791951 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 220 317 0 17 chr12 70491266 70491326 -73791163 - MIR SINE MIR -194 68 10 861 278 58 88 chr12 70491353 70491957 -73790532 + MLT1L LTR MaLR 29 614 -1 945 256 89 56 chr12 70492055 70492551 -73789938 + L1MCc LINE L1 34 549 -5874 278 25 0 25 chr12 70492551 70492591 -73789898 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 945 256 89 56 chr12 70492591 70492610 -73789879 + L1MCc LINE L1 549 566 -5857 180 0 0 0 chr12 70492615 70492635 -73789854 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1758 256 97 12 chr12 70492782 70493476 -73789013 + L1MCc LINE L1 832 1596 -4887 706 296 49 36 chr12 70493480 70493788 -73788701 + L1M3b LINE L1 1 312 -5969 577 265 20 0 chr12 70494017 70494168 -73788321 + L1M3b LINE L1 320 473 -5808 1511 247 116 7 chr12 70494168 70494772 -73787717 + L1MCc LINE L1 3669 4338 -2603 1688 222 0 0 chr12 70494833 70495126 -73787363 - AluJb SINE Alu -17 295 3 292 349 174 5 chr12 70496061 70496256 -73786233 + MIR SINE MIR 21 248 -14 453 254 68 17 chr12 70496329 70496447 -73786042 - L2 LINE L2 -5 3308 3185 363 263 94 42 chr12 70496739 70496952 -73785537 - MER102b DNA MER1_type 0 341 118 39 38 0 0 chr12 70498664 70498717 -73783772 + AT_rich Low_complexity Low_complexity 1 53 0 2256 99 0 14 chr12 70498751 70499045 -73783444 + AluSc SINE Alu 1 290 -19 249 83 0 0 chr12 70499819 70499855 -73782634 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 665 216 136 30 chr12 70500635 70500834 -73781655 - MIR SINE MIR -34 228 9 301 321 27 27 chr12 70501455 70501567 -73780922 - MIR SINE MIR -71 137 26 966 251 94 35 chr12 70501744 70502083 -73780406 - L2 LINE L2 -1 3312 2954 1298 231 29 34 chr12 70502580 70502626 -73779863 + MLT1B LTR MaLR 1 46 -344 2410 109 22 3 chr12 70502626 70502983 -73779506 - THE1B LTR MaLR 0 364 1 1298 231 29 34 chr12 70502983 70503321 -73779168 + MLT1B LTR MaLR 46 383 -7 710 261 71 50 chr12 70503350 70503714 -73778775 + L2 LINE L2 2863 3234 -79 264 130 0 0 chr12 70503761 70503807 -73778682 + (GA)n Simple_repeat Simple_repeat 1 46 0 243 279 0 15 chr12 70503952 70504020 -73778469 + L2 LINE L2 3203 3269 -3 278 261 0 15 chr12 70504149 70504214 -73778275 + L2 LINE L2 3209 3272 0 2508 204 42 2 chr12 70504217 70504697 -73777792 - MER21B LTR ERV1 -364 499 1 1487 138 8 23 chr12 70504784 70505045 -73777444 - MER21B-int LTR ERV1 -56 4135 3879 2204 91 0 14 chr12 70505884 70506169 -73776320 + AluSx SINE Alu 1 281 -31 180 176 0 0 chr12 70508306 70508340 -73774149 + GA-rich Low_complexity Low_complexity 2 35 0 4448 229 8 20 chr12 70508366 70509313 -73773176 + L1MA7 LINE L1 5356 6291 0 815 21 0 0 chr12 70510369 70510466 -73772023 - L1PA4 LINE L1 -3 6152 6056 884 231 95 17 chr12 70511843 70511966 -73770523 + MER5C DNA MER1_type 3 115 -209 2273 118 0 9 chr12 70511966 70512281 -73770208 - AluSx SINE Alu 0 312 1 884 231 95 17 chr12 70512281 70512452 -73770037 + MER5C DNA MER1_type 115 320 -4 393 22 0 0 chr12 70512515 70512561 -73769928 + (CA)n Simple_repeat Simple_repeat 1 46 0 487 165 8 30 chr12 70512725 70512858 -73769631 + CT-rich Low_complexity Low_complexity 3 132 0 2083 125 0 7 chr12 70713896 70714192 -73568297 + AluSq SINE Alu 1 294 -19 297 195 206 62 chr12 70714769 70714919 -73567570 + MER5A DNA MER1_type 5 187 -2 2263 99 0 32 chr12 70715206 70715520 -73566969 + AluSx SINE Alu 1 304 -8 1350 184 9 151 chr12 70715570 70716006 -73566483 - MLT1A2 LTR MaLR 0 374 1 369 290 152 34 chr12 70716641 70716910 -73565579 - L2 LINE L2 -40 3273 2973 2014 130 3 3 chr12 70716968 70717260 -73565229 + AluSx SINE Alu 1 292 -20 1107 95 0 20 chr12 70717286 70717434 -73565055 + AluY SINE Alu 1 145 -166 399 266 23 8 chr12 70717440 70717568 -73564921 + CT-rich Low_complexity Low_complexity 4 133 0 432 247 13 7 chr12 70717570 70717720 -73564769 + C-rich Low_complexity Low_complexity 3 153 0 196 200 29 0 chr12 70717752 70717822 -73564667 + CT-rich Low_complexity Low_complexity 1 72 0 487 203 16 57 chr12 70718872 70718995 -73563494 - FRAM SINE Alu -15 161 44 280 238 62 38 chr12 70719481 70719561 -73562928 - L2 LINE L2 -31 3282 3201 187 388 25 0 chr12 70720432 70720512 -73561977 + MIR SINE MIR 130 211 -51 254 256 45 77 chr12 70720962 70721118 -73561371 - L2 LINE L2 -5 3308 3158 428 252 70 21 chr12 70723534 70723677 -73558812 + MIR SINE MIR 47 196 -66 372 299 18 106 chr12 70723816 70724033 -73558456 + L2 LINE L2 3000 3197 -75 638 208 8 0 chr12 70724086 70724206 -73558283 + MIR SINE MIR 116 236 -26 1035 106 0 0 chr12 70724480 70724622 -73557867 + AluY SINE Alu 164 305 -6 25 51 0 0 chr12 70725031 70725070 -73557419 + AT_rich Low_complexity Low_complexity 1 39 0 560 276 241 19 chr12 70726592 70726907 -73555582 - L2 LINE L2 -1 3271 2887 345 231 137 26 chr12 70727257 70727374 -73555115 + MIR SINE MIR 115 244 -18 218 284 0 15 chr12 70727437 70727504 -73554985 - L2 LINE L2 -661 2653 2588 415 296 112 6 chr12 70727617 70727796 -73554693 + Charlie8 DNA MER1_type 62 259 -2158 432 335 102 46 chr12 70727975 70728410 -73554079 - L2 LINE L2 -877 2437 1973 2873 102 3 3 chr12 70728410 70728774 -73553715 + THE1B LTR MaLR 1 364 0 432 335 102 46 chr12 70728774 70728798 -73553691 - L2 LINE L2 -1341 1973 1952 467 288 31 31 chr12 70728836 70728996 -73553493 + MIR3 SINE MIR 42 201 -7 1824 164 26 0 chr12 70729117 70729421 -73553068 - AluJb SINE Alu 0 312 1 337 215 0 25 chr12 70730038 70730261 -73552228 + AluJb SINE Alu 2 281 -21 369 153 34 6 chr12 70730690 70730808 -73551681 - MER53 DNA DNA 0 189 2 246 312 220 0 chr12 70731006 70731115 -73551374 - L2 LINE L2 -7 3265 3133 285 272 72 72 chr12 70731130 70731255 -73551234 + MIR3 SINE MIR 30 154 -54 214 270 95 0 chr12 70731595 70731658 -73550831 + MIR3 SINE MIR 134 202 -6 480 331 125 42 chr12 70731766 70732318 -73550171 + L2 LINE L2 2378 2975 -339 217 294 44 0 chr12 70732375 70732443 -73550046 - MIR SINE MIR 0 262 192 239 241 37 0 chr12 70732542 70732596 -73549893 + L2 LINE L2 3168 3223 -49 1029 145 0 0 chr12 70732635 70732838 -73549651 - AluSg/x SINE Alu 0 333 131 809 133 0 8 chr12 70733040 70733160 -73549329 - FLAM_C SINE Alu -4 139 21 877 210 84 22 chr12 70733220 70733584 -73548905 + L1M4 LINE L1 4922 5330 -816 4433 148 63 47 chr12 70734560 70735415 -73547074 + L1MB8 LINE L1 5188 6069 -109 2105 136 10 0 chr12 70735415 70735724 -73546765 + AluSx SINE Alu 1 312 0 4433 148 63 47 chr12 70735724 70735835 -73546654 + L1MB8 LINE L1 6069 6177 -1 356 295 47 42 chr12 70735869 70736062 -73546427 + L1ME3A LINE L1 5962 6155 -15 22 56 0 0 chr12 70736088 70736124 -73546365 + AT_rich Low_complexity Low_complexity 1 36 0 278 300 12 0 chr12 70736169 70736249 -73546240 + MIR SINE MIR 66 146 -116 396 304 62 0 chr12 70737068 70737229 -73545260 + MIR SINE MIR 69 239 -23 1767 175 0 7 chr12 70737518 70737821 -73544668 + AluJb SINE Alu 1 301 -11 2171 119 0 16 chr12 70737870 70738173 -73544316 + AluSq SINE Alu 1 298 -15 381 255 92 149 chr12 70738372 70738654 -73543835 - L2 LINE L2 -1 3271 3006 2300 117 0 0 chr12 70738860 70739169 -73543320 + AluSx SINE Alu 1 309 -3 282 106 21 0 chr12 70741106 70741153 -73541336 + MADE1 DNA Mariner 33 80 0 44 0 0 0 chr12 70742115 70742159 -73540330 + AT_rich Low_complexity Low_complexity 1 44 0 537 326 17 0 chr12 70742325 70742497 -73539992 - MIR SINE MIR -12 250 76 189 107 0 0 chr12 70742633 70742661 -73539828 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 885 259 115 17 chr12 70742875 70743292 -73539197 - MER45C DNA AcHobo 0 953 483 201 39 0 0 chr12 70743528 70743554 -73538935 + (CA)n Simple_repeat Simple_repeat 2 27 0 1453 185 32 42 chr12 70743576 70743753 -73538736 + MER54B LTR ERVL 488 567 -226 2318 148 29 56 chr12 70743753 70744239 -73538250 + L1MA4A LINE L1 5831 6303 0 1453 185 32 42 chr12 70744239 70744464 -73538025 + MER54B LTR ERVL 567 793 0 1564 239 21 84 chr12 70744469 70744867 -73537622 - MER45C DNA AcHobo -474 479 118 2069 147 86 11 chr12 70744867 70745228 -73537261 - MLT1B LTR MaLR 0 390 3 1564 239 21 84 chr12 70745228 70745340 -73537149 - MER45C DNA AcHobo -835 118 1 333 338 19 50 chr12 70745347 70745507 -73536982 - L2 LINE L2 -2814 500 346 228 35 0 0 chr12 70745528 70745557 -73536932 + (TG)n Simple_repeat Simple_repeat 2 30 0 1851 145 14 3 chr12 70745566 70745855 -73536634 - AluSx SINE Alu -20 292 1 776 151 127 0 chr12 70746730 70746856 -73535633 + MER46A DNA MER2_type 4 145 -91 1674 153 21 24 chr12 70746873 70747160 -73535329 + AluJo SINE Alu 27 312 0 511 80 0 34 chr12 70747164 70747252 -73535237 + (GAAA)n Simple_repeat Simple_repeat 2 86 0 632 241 179 38 chr12 70747256 70747680 -73534809 - L1ME4a LINE L1 -48 6073 5590 1775 198 30 43 chr12 70748329 70748698 -73533791 - MLT1A1 LTR MaLR -1 364 1 279 290 56 43 chr12 70749103 70749265 -73533224 - L2 LINE L2 -176 3096 2933 1983 155 3 82 chr12 70749265 70749632 -73532857 - MER1B DNA MER1_type 0 339 2 454 320 56 34 chr12 70749834 70750103 -73532386 + L3 LINE CR1 483 757 -820 599 272 302 14 chr12 70750112 70750483 -73532006 - L2 LINE L2 0 3313 2836 400 263 51 15 chr12 70750590 70750727 -73531762 + L3 LINE CR1 816 957 -620 211 200 0 0 chr12 70750733 70750769 -73531720 + (CATG)n Simple_repeat Simple_repeat 1 36 0 2173 288 88 58 chr12 70752021 70752385 -73530104 + ERVL LTR ERVL 4160 4512 -1252 1707 166 0 50 chr12 70752385 70752704 -73529785 + AluJo SINE Alu 1 303 -9 2173 288 88 58 chr12 70752704 70753423 -73529066 + ERVL LTR ERVL 4512 5275 -489 2688 175 60 4 chr12 70753423 70753903 -73528586 + MLT2B2 LTR ERVL 1 507 -8 220 309 15 0 chr12 70753982 70754050 -73528439 - L2 LINE L2 -2481 833 765 400 207 67 1 chr12 70755643 70755769 -73526720 - HAL1b LINE L1 -1 6120 1222 741 250 60 28 chr12 70755930 70756211 -73526278 - L1ME LINE L1 -344 5777 5497 27 0 0 0 chr12 70756220 70756247 -73526242 + AT_rich Low_complexity Low_complexity 1 27 0 198 329 101 27 chr12 70756372 70756521 -73525968 + MIR SINE MIR 79 238 -24 532 273 38 0 chr12 70757120 70757252 -73525237 - L2 LINE L2 0 3313 3177 510 268 0 8 chr12 70757566 70757693 -73524796 + L2 LINE L2 3187 3312 -1 247 239 99 141 chr12 70757907 70758120 -73524369 + MIR SINE MIR 20 223 -39 189 358 79 83 chr12 70758259 70758488 -73524001 + L2 LINE L2 3029 3256 -16 181 319 78 26 chr12 70759134 70759250 -73523239 - L2 LINE L2 -10 3303 3182 754 205 68 6 chr12 70759320 70759481 -73523008 + MER5A DNA MER1_type 19 189 0 2389 161 91 48 chr12 70760268 70760752 -73521737 + MLT1D LTR MaLR 1 505 0 2454 48 3 7 chr12 70760782 70761075 -73521414 + AluY SINE Alu 1 292 -19 210 206 132 15 chr12 70762665 70762733 -73519756 - MIR3 SINE MIR -13 195 120 342 236 14 0 chr12 70762777 70762849 -73519640 + MIR SINE MIR 41 113 -95 2103 141 0 0 chr12 70762946 70763258 -73519231 - AluSx SINE Alu 0 312 1 281 341 29 14 chr12 70763275 70763413 -73519076 + MER5A DNA MER1_type 50 189 0 319 321 139 27 chr12 70763500 70763687 -73518802 - MIR SINE MIR -50 212 5 580 315 54 68 chr12 70763782 70764340 -73518149 + L2 LINE L2 2712 3313 0 236 260 0 27 chr12 70764328 70764401 -73518088 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 * 2061 85 26 4 chr12 70764446 70764716 -73517773 + AluSx SINE Alu 33 308 -4 2185 108 28 0 chr12 70767165 70767452 -73515037 - AluSq SINE Alu -16 297 3 306 145 24 12 chr12 70769368 70769451 -73513038 + (TA)n Simple_repeat Simple_repeat 2 85 0 203 309 74 0 chr12 70769984 70770065 -73512424 + MIR SINE MIR 106 192 -70 353 191 29 57 chr12 70771817 70771922 -73510567 + MIR SINE MIR 94 195 -67 263 306 12 0 chr12 70772487 70772572 -73509917 - MER117 DNA MER1_type -111 86 1 281 350 25 8 chr12 70772579 70772699 -73509790 - MIR SINE MIR -66 142 21 204 296 106 14 chr12 70772835 70772977 -73509512 + L3 LINE CR1 1329 1483 -94 481 280 43 28 chr12 70773007 70773218 -73509271 - MIR SINE MIR -34 228 15 2021 140 0 58 chr12 70773651 70773979 -73508510 - AluSx SINE Alu -3 309 1 21 36 0 0 chr12 70774458 70774486 -73508003 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr12 70774802 70774829 -73507660 + GC_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr12 70774852 70774876 -73507613 + GC_rich Low_complexity Low_complexity 1 24 0 34 42 0 0 chr12 70774906 70774954 -73507535 + GC_rich Low_complexity Low_complexity 1 48 0 239 209 0 0 chr12 70775068 70775111 -73507378 + (CAG)n Simple_repeat Simple_repeat 1 43 0 231 114 0 0 chr12 70776447 70776482 -73506007 + (A)n Simple_repeat Simple_repeat 1 35 0 2622 34 0 0 chr12 70776715 70777009 -73505480 - AluY SINE Alu -17 294 1 255 31 0 0 chr12 70777225 70777257 -73505232 + (TAA)n Simple_repeat Simple_repeat 1 32 0 268 347 124 38 chr12 70778437 70778855 -73503634 + L2 LINE L2 2819 3272 0 814 148 0 23 chr12 70778888 70779016 -73503473 - AluSq/x SINE Alu -188 125 1 323 222 46 56 chr12 70779249 70779357 -73503132 - MIR SINE MIR -89 173 67 707 294 73 37 chr12 70779634 70779988 -73502501 + LTR16A LTR ERVL 79 445 -5 2040 140 57 11 chr12 70781257 70781607 -73500882 - MER47A DNA MER2_type 0 366 1 219 114 0 0 chr12 70782432 70782467 -73500022 + (TC)n Simple_repeat Simple_repeat 1 35 0 1105 153 32 42 chr12 70782467 70782632 -73499857 - AluJo SINE Alu -13 299 134 291 54 0 0 chr12 70782632 70782669 -73499820 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2047 94 45 0 chr12 70782669 70782935 -73499554 - AluSg SINE Alu -32 278 1 1105 153 32 42 chr12 70782935 70782984 -73499505 - AluJo SINE Alu -176 136 86 2191 112 3 3 chr12 70783704 70784007 -73498482 + AluSq SINE Alu 1 303 -10 21 36 0 0 chr12 70784084 70784112 -73498377 + AT_rich Low_complexity Low_complexity 1 28 0 296 230 180 0 chr12 70784289 70784389 -73498100 - L2 LINE L2 -1 3312 3195 198 0 0 0 chr12 70784977 70784999 -73497490 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2217 134 0 0 chr12 70785029 70785342 -73497147 - AluSq SINE Alu 0 313 1 454 258 36 24 chr12 70785377 70785544 -73496945 + Charlie8 DNA MER1_type 2202 2370 -47 546 228 156 63 chr12 70786453 70786690 -73495799 - MLT1J LTR MaLR -3 508 250 425 302 38 19 chr12 70786735 70786894 -73495595 - MLT1J LTR MaLR -347 164 3 1954 141 0 0 chr12 70787250 70787580 -73494909 - AluSx SINE Alu 0 334 5 213 216 20 20 chr12 70787948 70787999 -73494490 - MIR SINE MIR -60 148 98 236 267 193 47 chr12 70788044 70788194 -73494295 - MIR SINE MIR -44 218 47 624 197 38 45 chr12 70788196 70788354 -73494135 - FLAM_A SINE Alu 0 133 2 1345 156 90 73 chr12 70788358 70788647 -73493842 - AluJo SINE Alu -18 294 1 313 269 46 15 chr12 70789856 70789986 -73492503 - Charlie2a DNA MER1_type -31 2831 2698 * 637 237 40 12 chr12 70789976 70790149 -73492340 - Charlie2a DNA MER1_type -1203 1659 1482 730 228 46 62 chr12 70790318 70790390 -73492099 - Charlie2a DNA MER1_type -2552 310 238 2072 126 3 14 chr12 70790390 70790684 -73491805 + AluSx SINE Alu 1 291 -21 730 228 46 62 chr12 70790684 70790852 -73491637 - Charlie2a DNA MER1_type -2624 238 74 340 296 24 47 chr12 70790887 70791056 -73491433 + MIR SINE MIR 98 262 0 1162 152 5 5 chr12 70791625 70791816 -73490673 - AluSg/x SINE Alu -3 306 116 2205 116 7 3 chr12 70791831 70792133 -73490356 - AluSg SINE Alu -7 303 1 2124 115 0 33 chr12 70792135 70792439 -73490050 - AluSx SINE Alu -18 294 1 2491 45 0 39 chr12 70792957 70793266 -73489223 + AluY SINE Alu 1 297 -14 187 210 65 16 chr12 70795359 70795421 -73487068 + MIR SINE MIR 89 153 -109 211 196 0 36 chr12 70795674 70795730 -73486759 + T-rich Low_complexity Low_complexity 1 54 0 2223 113 7 0 chr12 70796107 70796408 -73486081 + AluSq SINE Alu 1 303 -10 301 313 147 33 chr12 70796629 70796840 -73485649 + MIR SINE MIR 13 247 -15 533 182 57 88 chr12 70797124 70797206 -73485283 + MIR SINE MIR 60 139 -123 2003 143 3 0 chr12 70797206 70797519 -73484970 + AluSx SINE Alu 1 314 0 533 182 57 88 chr12 70797519 70797592 -73484897 + MIR SINE MIR 139 213 -49 2308 113 0 0 chr12 70799135 70799436 -73483053 + AluSx SINE Alu 1 301 -11 225 0 0 0 chr12 70801229 70801254 -73481235 + (A)n Simple_repeat Simple_repeat 1 25 0 259 260 125 29 chr12 70802919 70803023 -73479466 + MER112 DNA MER1_type 132 245 -15 354 286 30 23 chr12 70803084 70803217 -73479272 + MER5A DNA MER1_type 55 188 -1 1832 178 0 7 chr12 70803611 70803920 -73478569 + AluJo SINE Alu 1 307 -5 2156 108 0 4 chr12 70805158 70805437 -73477052 - AluSx SINE Alu -30 282 5 498 207 17 0 chr12 70805466 70805582 -73476907 - L1MA6 LINE L1 0 6300 6183 677 205 63 32 chr12 70805582 70805772 -73476717 - MER4C LTR ERV1 0 465 270 319 149 30 45 chr12 70805767 70805834 -73476655 - MER4A LTR ERV1 -241 423 358 * 1589 138 62 90 chr12 70805874 70806264 -73476225 - MER4A LTR ERV1 -239 359 1 1801 152 51 3 chr12 70806264 70806300 -73476189 - L1MA7 LINE L1 -114 6186 6153 2212 109 0 47 chr12 70806300 70806620 -73475869 - AluSg SINE Alu -1 309 5 1801 152 51 3 chr12 70806620 70806932 -73475557 - L1MA7 LINE L1 -147 6153 5822 306 238 40 30 chr12 70806933 70807034 -73475455 - LTR37B LTR ERV1 -26 442 341 1746 163 10 33 chr12 70807044 70807350 -73475139 + AluJb SINE Alu 1 299 -13 294 256 47 0 chr12 70807374 70807460 -73475029 + L1MC4 LINE L1 6614 6703 -1339 415 202 21 0 chr12 70807527 70807621 -73474868 - LTR37B LTR ERV1 -162 306 211 2302 110 3 7 chr12 70808142 70808452 -73474037 + AluSp SINE Alu 1 309 -4 22 35 0 0 chr12 70810830 70810859 -73471630 + AT_rich Low_complexity Low_complexity 1 29 0 1938 140 0 29 chr12 70811840 70812147 -73470342 + AluSx SINE Alu 1 298 -14 1032 207 40 140 chr12 70812188 70812401 -73470088 + L1MC4 LINE L1 6737 6970 -991 2019 147 0 3 chr12 70812401 70812701 -73469788 + AluSx SINE Alu 1 299 -13 1032 207 40 140 chr12 70812701 70813058 -73469431 + L1MC4 LINE L1 6970 7214 -747 378 270 83 68 chr12 70813194 70813419 -73469070 + L1MC5 LINE L1 7314 7534 -427 2142 128 0 25 chr12 70813419 70813738 -73468751 + AluSx SINE Alu 1 311 -1 378 270 83 68 chr12 70813738 70814043 -73468446 + L1MC5 LINE L1 7534 7911 -50 203 324 49 0 chr12 70814228 70814330 -73468159 + MIR SINE MIR 31 137 -125 253 238 62 38 chr12 70814782 70814862 -73467627 - L2 LINE L2 -31 3282 3201 218 211 0 0 chr12 70815306 70815344 -73467145 + L2 LINE L2 3244 3281 -32 192 77 0 0 chr12 70815359 70815385 -73467104 + (CA)n Simple_repeat Simple_repeat 1 26 0 226 314 23 0 chr12 70815599 70815685 -73466804 + MIR SINE MIR 62 149 -113 189 0 0 0 chr12 70815888 70815909 -73466580 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 358 304 29 0 chr12 70816153 70816255 -73466234 + L2 LINE L2 3209 3313 0 181 290 29 14 chr12 70817541 70817610 -73464879 + L2 LINE L2 2781 2850 -464 198 0 0 0 chr12 70817612 70817634 -73464855 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 928 140 42 0 chr12 70817634 70817777 -73464712 - AluSg/x SINE Alu -27 285 137 2152 112 41 0 chr12 70817851 70818145 -73464344 - AluSx SINE Alu -6 306 1 674 277 167 21 chr12 70818191 70818520 -73463969 + L2 LINE L2 2915 3291 -22 541 253 53 12 chr12 70818645 70818815 -73463674 + MER5B DNA MER1_type 1 177 -1 535 98 73 0 chr12 70818957 70819039 -73463450 + AluSg/x SINE Alu 211 298 -11 205 329 43 0 chr12 70819535 70819605 -73462884 + MIR SINE MIR 67 139 -123 2125 108 3 10 chr12 70820084 70820380 -73462109 - AluSq SINE Alu -19 294 1 198 329 150 18 chr12 70820387 70820767 -73461722 - L2 LINE L2 -1192 2122 1693 726 192 0 0 chr12 70820769 70820894 -73461595 - FLAM_C SINE Alu -6 127 3 542 269 31 31 chr12 70820917 70821077 -73461412 + MIR SINE MIR 3 162 -100 192 40 0 0 chr12 70823215 70823240 -73459249 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2101 95 3 18 chr12 70823247 70823532 -73458957 - AluSq SINE Alu -32 281 1 360 255 355 42 chr12 70824175 70824575 -73457914 + L3 LINE CR1 885 1409 -168 571 173 0 0 chr12 70824773 70824877 -73457612 - U13 snRNA snRNA 0 104 1 966 175 129 132 chr12 70825027 70825422 -73457067 + MER92B LTR ERV1 1 394 -242 6903 205 53 31 chr12 70825425 70825783 -73456706 + L1MB7 LINE L1 3135 3484 -2662 2364 107 3 0 chr12 70825783 70826092 -73456397 + AluSp SINE Alu 2 311 -2 6903 205 53 31 chr12 70826092 70827027 -73455462 + L1MB7 LINE L1 3484 4398 -1748 1497 163 0 52 chr12 70827027 70827297 -73455192 + AluJb SINE Alu 3 258 -54 6903 205 53 31 chr12 70827297 70827600 -73454889 + L1MB7 LINE L1 4398 4693 -1453 2200 118 0 3 chr12 70827600 70827906 -73454583 + AluSx SINE Alu 1 305 -7 6903 205 53 31 chr12 70827906 70827919 -73454570 + L1MB7 LINE L1 4693 4704 -1442 2379 94 0 10 chr12 70827919 70828228 -73454261 + AluY SINE Alu 1 306 -5 6903 205 53 31 chr12 70828228 70828622 -73453867 + L1MB7 LINE L1 4704 5184 -962 1440 139 89 34 chr12 70828636 70828960 -73453529 - THE1C LTR MaLR -33 342 1 327 252 0 0 chr12 70828960 70829067 -73453422 + L1MB7 LINE L1 5179 5285 -861 2077 195 22 91 chr12 70829070 70829593 -73452896 + MLT2B3 LTR ERVL 1 480 -74 3068 85 22 25 chr12 70829593 70830038 -73452451 + MLT2A1 LTR ERVL 1 444 0 2077 195 22 91 chr12 70830038 70830109 -73452380 + MLT2B3 LTR ERVL 480 554 0 3707 164 62 36 chr12 70830113 70830821 -73451668 + L1MB7 LINE L1 5288 5976 -208 2379 78 7 0 chr12 70830821 70831116 -73451373 - AluSp SINE Alu -16 297 1 3707 164 62 36 chr12 70831116 70831155 -73451334 + L1MB7 LINE L1 5976 6012 -172 899 131 0 36 chr12 70831155 70831292 -73451197 + FLAM_C SINE Alu 1 132 -1 3707 164 62 36 chr12 70831292 70831408 -73451081 + L1MB7 LINE L1 6012 6175 -9 876 94 78 0 chr12 70831409 70831537 -73450952 + MER85 DNA T2_type 2 139 0 239 307 10 0 chr12 70831598 70831699 -73450790 + MARNA DNA Mariner 327 428 -158 2221 105 0 0 chr12 70831910 70832236 -73450253 - AluSx SINE Alu 0 326 1 21 36 0 0 chr12 70832251 70832279 -73450210 + AT_rich Low_complexity Low_complexity 1 28 0 244 274 110 0 chr12 70832762 70832835 -73449654 + L2 LINE L2 3225 3305 -8 522 220 107 48 chr12 70832867 70833035 -73449454 - MER45A DNA AcHobo 0 178 1 279 318 154 45 chr12 70833389 70833923 -73448566 + L2 LINE L2 2337 2928 -386 964 274 218 62 chr12 70834753 70835796 -73446693 + L2 LINE L2 1446 2325 -988 1990 150 0 13 chr12 70835796 70836103 -73446386 - AluJb SINE Alu -9 303 1 1856 188 7 7 chr12 70836107 70836415 -73446074 - AluJo SINE Alu -3 309 2 964 274 218 62 chr12 70836415 70836426 -73446063 + L2 LINE L2 2327 2335 -978 2022 143 0 0 chr12 70836426 70836712 -73445777 - AluJb SINE Alu -20 292 7 964 274 218 62 chr12 70836712 70836889 -73445600 + L2 LINE L2 2335 2483 -830 2104 103 11 3 chr12 70836889 70837192 -73445297 - AluSq SINE Alu 0 305 1 964 274 218 62 chr12 70837192 70837519 -73444970 + L2 LINE L2 2483 3273 -40 551 170 52 0 chr12 70837834 70837969 -73444520 - Tigger7 DNA MER2_type -47 2440 2299 * 1535 187 61 0 chr12 70837966 70838260 -73444229 - Tigger7 DNA MER2_type -2169 318 7 293 237 46 0 chr12 70839820 70839951 -73442538 + (TA)n Simple_repeat Simple_repeat 1 137 0 192 40 0 0 chr12 70840007 70840032 -73442457 + (TA)n Simple_repeat Simple_repeat 1 25 0 382 349 70 16 chr12 70840857 70841115 -73441374 + L2 LINE L2 2613 2884 -430 234 273 13 52 chr12 70841216 70841293 -73441196 + L2 LINE L2 3184 3257 -56 324 188 31 0 chr12 70841584 70841648 -73440841 + L2 LINE L2 2735 2800 -514 1339 167 91 48 chr12 70841648 70842020 -73440469 - Charlie5 DNA MER1_type 0 2624 2237 1689 160 61 3 chr12 70842022 70842316 -73440173 - AluJb SINE Alu -1 311 1 565 151 11 0 chr12 70842329 70842422 -73440067 - Charlie5 DNA MER1_type -2518 94 1 938 277 50 76 chr12 70842422 70842950 -73439539 + L2 LINE L2 2793 3312 -1 427 273 25 0 chr12 70843108 70843269 -73439220 + HAL1 LINE L1 1113 1277 -1230 2175 127 0 13 chr12 70843530 70843846 -73438643 - AluSx SINE Alu 0 312 1 2347 76 7 0 chr12 70844054 70844343 -73438146 + AluSg SINE Alu 1 291 -19 1049 180 23 5 chr12 70844500 70844717 -73437772 + L1MD3 LINE L1 7759 7979 -16 1023 170 5 36 chr12 70845003 70845227 -73437262 - MER96B DNA MER1_type? 0 417 201 639 163 85 7 chr12 70846113 70846266 -73436223 + L1M4 LINE L1 3581 3745 -2401 280 324 97 32 chr12 70847070 70847255 -73435234 - MIR SINE MIR -31 231 35 2358 93 0 7 chr12 70848004 70848314 -73434175 - AluSq SINE Alu -5 308 1 315 107 0 18 chr12 70849708 70849764 -73432725 + HsTC2 DNA Tc2 2 56 -1842 350 268 46 59 chr12 70850522 70850675 -73431814 + L2 LINE L2 3158 3308 -5 190 354 30 30 chr12 70851124 70851223 -73431266 - MIR SINE MIR -51 211 113 194 186 93 0 chr12 70851564 70851607 -73430882 - L2 LINE L2 0 3272 3226 331 369 64 5 chr12 70852230 70852417 -73430072 - MIR SINE MIR -31 231 34 1069 99 209 11 chr12 70853288 70853376 -73429113 - MER30 DNA MER1_type 0 230 161 2144 108 0 51 chr12 70853376 70853555 -73428934 - AluSx SINE Alu -12 300 142 2555 63 0 0 chr12 70853555 70853857 -73428632 - AluY SINE Alu -9 302 1 2144 108 0 51 chr12 70853857 70853992 -73428497 - AluSx SINE Alu -170 142 2 315 0 0 0 chr12 70853992 70854027 -73428462 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1069 99 209 11 chr12 70854027 70854128 -73428361 - MER30 DNA MER1_type -68 162 2 2147 136 17 9 chr12 70854272 70854617 -73427872 - MER7A DNA MER2_type 0 346 1 24 0 0 0 chr12 70855900 70855924 -73426565 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 70857105 70857126 -73425363 + AT_rich Low_complexity Low_complexity 1 21 0 582 146 97 0 chr12 70857228 70857331 -73425158 + MER46A DNA MER2_type 2 114 -122 566 164 22 8 chr12 70857682 70857816 -73424673 - MER53 DNA DNA 0 189 54 326 207 27 81 chr12 70857878 70857989 -73424500 - MER117 DNA MER1_type -78 119 15 267 331 90 27 chr12 70858325 70858479 -73424010 + MIR SINE MIR 20 181 -58 197 202 45 101 chr12 70858740 70858829 -73423660 + MIR3 SINE MIR 124 207 -1 257 365 19 0 chr12 70858857 70858961 -73423528 - L2 LINE L2 -1 3312 3207 249 141 254 28 chr12 70858993 70859064 -73423425 + MER5C DNA MER1_type 1 87 -237 1811 174 0 3 chr12 70859117 70859410 -73423079 - AluJb SINE Alu -14 298 7 2027 125 7 7 chr12 70859642 70859945 -73422544 - AluSg SINE Alu -7 303 1 21 0 0 0 chr12 70860948 70860969 -73421520 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 70861057 70861078 -73421411 + AT_rich Low_complexity Low_complexity 1 21 0 868 271 75 59 chr12 70861078 70861687 -73420802 - HAL1 LINE L1 -2 2505 1887 2306 124 5 58 chr12 70861695 70862105 -73420384 + MLT1B LTR MaLR 3 390 0 367 254 120 7 chr12 70862118 70862260 -73420229 + HAL1 LINE L1 553 710 -1797 328 299 46 23 chr12 70862315 70862489 -73420000 - HAL1 LINE L1 -1989 518 341 198 0 0 0 chr12 70862529 70862551 -73419938 + (T)n Simple_repeat Simple_repeat 1 22 0 1897 136 52 0 chr12 70862564 70862850 -73419639 + AluSx SINE Alu 1 301 -11 21 36 0 0 chr12 70863088 70863116 -73419373 + AT_rich Low_complexity Low_complexity 1 28 0 1828 149 17 30 chr12 70864833 70865135 -73417354 - AluJo SINE Alu -14 298 1 284 214 22 101 chr12 70865204 70865293 -73417196 - MIR3 SINE MIR -6 202 121 224 258 172 21 chr12 70866029 70866122 -73416367 + L2 LINE L2 3137 3243 -29 363 300 192 28 chr12 70866130 70866490 -73415999 + L2 LINE L2 2838 3256 -57 870 203 148 0 chr12 70866568 70866750 -73415739 - MER3 DNA MER1_type 0 209 1 2009 107 50 10 chr12 70866929 70867121 -73415368 - AluSq SINE Alu 0 313 103 180 0 0 0 chr12 70867121 70867141 -73415348 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2009 107 50 10 chr12 70867141 70867247 -73415242 - AluSq SINE Alu -210 103 3 25 0 0 0 chr12 70867478 70867503 -73414986 + AT_rich Low_complexity Low_complexity 1 25 0 368 167 38 13 chr12 70867503 70867582 -73414907 + LTR30 LTR ERV1 372 624 -98 186 43 0 0 chr12 70867586 70867609 -73414880 + (A)n Simple_repeat Simple_repeat 1 23 0 205 172 0 62 chr12 70868188 70868252 -73414237 + (CGGGG)n Simple_repeat Simple_repeat 5 64 0 232 267 30 59 chr12 70868472 70868573 -73413916 + MER5A DNA MER1_type 92 189 0 492 322 182 18 chr12 70869138 70869595 -73412894 + L2 LINE L2 1851 2382 -932 749 206 0 62 chr12 70869685 70869831 -73412658 - FLAM_C SINE Alu 0 143 7 180 0 0 0 chr12 70869857 70869877 -73412612 + (T)n Simple_repeat Simple_repeat 1 20 0 1459 164 0 20 chr12 70869890 70870140 -73412349 - AluJb SINE Alu -67 245 1 263 297 0 0 chr12 70870311 70870375 -73412114 + MER5B DNA MER1_type 1 64 -114 766 288 28 31 chr12 70870376 70870695 -73411794 + L1MC4a LINE L1 5639 5956 -1852 1283 185 13 0 chr12 70870722 70870949 -73411540 + AluJo SINE Alu 1 230 -82 276 154 0 0 chr12 70870950 70871002 -73411487 + GA-rich Low_complexity Low_complexity 3 54 0 692 260 153 66 chr12 70871002 70871636 -73410853 + L1MC4a LINE L1 6000 6688 -1120 605 221 123 12 chr12 70871640 70871803 -73410686 - AluJo SINE Alu -10 302 122 1671 138 8 0 chr12 70871839 70872085 -73410404 + AluSx SINE Alu 1 248 -64 283 274 138 28 chr12 70872100 70872555 -73409934 + L1MC5 LINE L1 6983 7420 -617 1644 147 54 22 chr12 70872555 70872869 -73409620 - MER33 DNA MER1_type 0 324 1 283 274 138 28 chr12 70872869 70872955 -73409534 + L1MC5 LINE L1 7420 7495 -542 698 192 10 98 chr12 70872956 70873149 -73409340 - MER58C DNA MER1_type 0 215 40 284 176 149 0 chr12 70873174 70873248 -73409241 + L1MC4 LINE L1 7525 7609 -433 555 270 145 64 chr12 70874049 70874394 -73408095 + MLT1I LTR MaLR 37 409 0 1544 154 42 31 chr12 70874654 70874940 -73407549 + AluJo SINE Alu 1 289 -23 1668 201 67 6 chr12 70874950 70875278 -73407211 - MER7A DNA MER2_type 0 346 1 2228 105 0 20 chr12 70875411 70875715 -73406774 - AluSq SINE Alu -15 298 1 1024 161 42 0 chr12 70876123 70876291 -73406198 + AluSg/x SINE Alu 134 308 -4 1512 199 40 0 chr12 70876303 70876415 -73406074 + AluJo SINE Alu 5 111 -201 360 0 0 0 chr12 70876415 70876455 -73406034 + (CA)n Simple_repeat Simple_repeat 1 40 0 1512 199 40 0 chr12 70876455 70876638 -73405851 + AluJo SINE Alu 111 312 0 264 239 92 124 chr12 70876919 70877137 -73405352 - L2 LINE L2 0 3313 3103 2282 105 52 133 chr12 70877148 70877191 -73405298 + MSTC LTR MaLR 1 46 -382 2023 136 3 3 chr12 70877191 70877486 -73405003 + AluSx SINE Alu 1 295 -17 2282 105 52 133 chr12 70877486 70877677 -73404812 + MSTC LTR MaLR 46 181 -247 996 120 0 175 chr12 70877677 70877911 -73404578 - 7SK RNA RNA 0 193 1 2282 105 52 133 chr12 70877911 70878141 -73404348 + MSTC LTR MaLR 181 428 0 1992 117 4 4 chr12 70878792 70879073 -73403416 + AluSx SINE Alu 1 281 -31 659 295 72 17 chr12 70879213 70879450 -73403039 - MIR SINE MIR -1 261 12 2708 108 5 22 chr12 70879766 70880136 -73402353 + THE1B LTR MaLR 1 364 0 1731 128 0 47 chr12 70880417 70880691 -73401798 + AluSq SINE Alu 1 261 -52 534 31 0 0 chr12 70880821 70880885 -73401604 + (CATA)n Simple_repeat Simple_repeat 2 65 0 608 237 29 0 chr12 70881447 70881586 -73400903 + L2 LINE L2 1560 1702 -1612 809 100 0 0 chr12 70881592 70881692 -73400797 + AluSx SINE Alu 37 136 -177 2118 121 0 3 chr12 70881692 70881982 -73400507 + AluSx SINE Alu 1 289 -23 1229 144 6 0 chr12 70882012 70882193 -73400296 + AluSx SINE Alu 118 299 -11 309 274 49 0 chr12 70882199 70882301 -73400188 + L2 LINE L2 1717 1823 -1491 312 333 8 56 chr12 70882319 70882445 -73400044 + MER91A DNA MER1_type 21 140 -56 429 271 17 8 chr12 70882555 70882673 -73399816 + L2 LINE L2 1814 1932 -1382 1481 146 62 38 chr12 70882675 70883094 -73399395 - MLT1D LTR MaLR -3 502 1 3075 266 72 35 chr12 70883098 70883385 -73399104 + L2 LINE L2 1932 2207 -1106 2403 106 0 0 chr12 70883385 70883697 -73398792 - AluSx SINE Alu 0 312 1 3075 266 72 35 chr12 70883697 70884499 -73397990 + L2 LINE L2 2207 3057 -256 2142 97 3 36 chr12 70884565 70884873 -73397616 - AluSc SINE Alu -11 298 1 22 0 0 0 chr12 70884876 70884898 -73397591 + AT_rich Low_complexity Low_complexity 1 22 0 3969 146 33 46 chr12 70884904 70885728 -73396761 - L1MB8 LINE L1 -171 6007 5188 877 210 84 22 chr12 70886704 70887068 -73395421 - L1MB8 LINE L1 -816 5330 4922 809 133 0 8 chr12 70887128 70887248 -73395241 + FLAM_C SINE Alu 21 139 -4 1030 145 0 0 chr12 70887450 70887653 -73394836 + AluSg/x SINE Alu 133 335 0 239 241 37 0 chr12 70887692 70887746 -73394743 - L2 LINE L2 -49 3223 3168 217 294 44 0 chr12 70887845 70887913 -73394576 + MIR SINE MIR 192 262 0 480 331 125 42 chr12 70887970 70888522 -73393967 - L2 LINE L2 -339 2975 2378 231 240 27 13 chr12 70888773 70888848 -73393641 - AluJo SINE Alu -109 193 118 2001 124 4 0 chr12 70888876 70889151 -73393338 + AluSq SINE Alu 27 302 -11 536 273 72 34 chr12 70889882 70890091 -73392398 - MIR SINE MIR -44 218 2 487 260 166 6 chr12 70891159 70891328 -73391161 - MIR SINE MIR -3 259 64 340 333 136 0 chr12 70891337 70891514 -73390975 + L3 LINE CR1 1305 1505 -72 1793 170 55 12 chr12 70891525 70891655 -73390834 + MER2 DNA MER2_type 2 125 -220 6741 118 98 26 chr12 70891655 70892050 -73390439 - Tigger3b DNA MER2_type -1798 1230 865 2312 103 3 0 chr12 70892050 70892350 -73390139 - AluSp SINE Alu -12 301 1 6741 118 98 26 chr12 70892350 70893101 -73389388 - Tigger3b DNA MER2_type -2163 865 1 1793 170 55 12 chr12 70893101 70893300 -73389189 + MER2 DNA MER2_type 125 345 0 504 234 75 124 chr12 70894678 70894943 -73387546 + L3b LINE CR1 1262 1513 -70 27 0 0 0 chr12 70895548 70895575 -73386914 + AT_rich Low_complexity Low_complexity 1 27 0 1521 192 36 7 chr12 70895584 70895860 -73386629 - AluJb SINE Alu -22 290 7 257 321 0 0 chr12 70895989 70896070 -73386419 + CT-rich Low_complexity Low_complexity 4 84 0 1475 188 61 95 chr12 70896286 70896696 -73385793 + MSTD LTR MaLR 1 396 0 801 216 42 16 chr12 70896701 70896891 -73385598 + MER58A DNA MER1_type 30 224 0 369 267 155 37 chr12 70897482 70897643 -73384846 - MIR3 SINE MIR -9 199 20 321 204 122 0 chr12 70898014 70898112 -73384377 - L1ME4a LINE L1 -2 6119 6010 531 253 119 63 chr12 70898148 70898527 -73383962 - L1ME4a LINE L1 -209 5912 5513 2340 150 18 32 chr12 70899011 70899450 -73383039 - L1MB4 LINE L1 -2 6178 5746 2196 104 0 10 chr12 70899849 70900180 -73382309 - AluSx SINE Alu 0 328 1 430 261 36 36 chr12 70902745 70902910 -73379579 + MER91B DNA MER1_type 15 179 -11 1933 115 4 18 chr12 70903341 70903620 -73378869 + AluSq SINE Alu 30 304 -9 242 311 37 15 chr12 70903707 70903842 -73378647 - MIR SINE MIR -55 207 70 184 89 22 22 chr12 70903851 70903896 -73378593 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 802 123 9 9 chr12 70903903 70904017 -73378472 - FLAM_C SINE Alu -15 118 5 445 206 146 75 chr12 70904234 70904487 -73378002 - L1MC4a LINE L1 -1774 6034 5764 1049 154 6 17 chr12 70905163 70905338 -73377151 + AluJo SINE Alu 113 285 -27 189 229 0 0 chr12 70905435 70905483 -73377006 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 332 118 15 0 chr12 70905482 70905550 -73376939 + (GA)n Simple_repeat Simple_repeat 1 69 0 309 208 0 0 chr12 70906080 70906133 -73376356 - L3 LINE CR1 -1 1576 1524 321 26 0 0 chr12 70906175 70906213 -73376276 + (CA)n Simple_repeat Simple_repeat 1 38 0 259 224 12 59 chr12 70906430 70906515 -73375974 - MLT1E2 LTR MaLR -13 613 533 272 275 33 25 chr12 70906668 70906788 -73375701 - MLT1H LTR MaLR -379 170 50 929 143 50 116 chr12 70906814 70907073 -73375416 - MLT1A1 LTR MaLR 0 365 124 2141 260 152 28 chr12 70907125 70908179 -73374310 + L2 LINE L2 2007 3184 -129 214 269 181 27 chr12 70908740 70908889 -73373600 - MIR SINE MIR -6 256 85 251 210 32 32 chr12 70908938 70909000 -73373489 - L1MC4a LINE L1 0 7808 7747 308 72 0 58 chr12 70909008 70909077 -73373412 + (TA)n Simple_repeat Simple_repeat 1 65 0 242 113 0 19 chr12 70909078 70909131 -73373358 + (TC)n Simple_repeat Simple_repeat 2 53 0 33 0 0 0 chr12 70909131 70909164 -73373325 + AT_rich Low_complexity Low_complexity 1 33 0 1217 219 80 14 chr12 70909198 70909550 -73372939 - L1MC4 LINE L1 -375 7667 7293 43309 53 3 3 chr12 70909550 70912769 -73369720 + L1PA5 LINE L1 1 3220 -2934 2370 88 0 0 chr12 70912769 70913064 -73369425 + AluY SINE Alu 1 295 -16 43309 53 3 3 chr12 70913064 70915999 -73366490 + L1PA5 LINE L1 3220 6154 0 1243 195 76 50 chr12 70916025 70916368 -73366121 - L1MC4 LINE L1 -736 7306 6955 419 309 70 57 chr12 70916500 70916730 -73365759 + MIR SINE MIR 27 259 -3 337 284 128 0 chr12 70916730 70916878 -73365611 + MIR SINE MIR 95 261 -1 398 299 45 0 chr12 70916893 70917027 -73365462 + MIR SINE MIR 110 249 -13 1941 121 39 23 chr12 70917916 70917950 -73364539 - AluSx SINE Alu 0 312 280 210 37 0 0 chr12 70917950 70917977 -73364512 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1941 121 39 23 chr12 70917977 70918249 -73364240 - AluSx SINE Alu -32 280 1 1089 167 233 0 chr12 70918264 70918509 -73363980 - AluJb SINE Alu 0 302 1 185 270 0 90 chr12 70918540 70918567 -73363922 - MIR SINE MIR -35 227 199 1352 80 20 92 chr12 70918567 70918595 -73363894 + L1PA14 LINE L1 5928 5956 -205 2300 117 0 0 chr12 70918595 70918902 -73363587 + AluSx SINE Alu 6 312 0 1352 80 20 92 chr12 70918902 70919122 -73363367 + L1PA14 LINE L1 5956 6158 -3 185 270 0 90 chr12 70919122 70919177 -73363312 - MIR SINE MIR -63 199 153 539 65 26 0 chr12 70919177 70919254 -73363235 - MADE1 DNA Mariner -1 79 1 295 313 96 0 chr12 70919315 70919430 -73363059 - MIR SINE MIR -118 144 19 290 250 19 29 chr12 70919786 70919890 -73362599 + MIR3 SINE MIR 105 207 -1 343 285 23 34 chr12 70919997 70920216 -73362273 + CT-rich Low_complexity Low_complexity 1 216 0 600 191 0 0 chr12 70921184 70921294 -73361195 - FLAM_A SINE Alu -32 110 1 22 0 0 0 chr12 70921558 70921580 -73360909 + AT_rich Low_complexity Low_complexity 1 22 0 2381 88 7 0 chr12 70922368 70922673 -73359816 + AluSx SINE Alu 6 312 0 281 227 53 0 chr12 70924987 70925062 -73357427 + MIR SINE MIR 48 126 -136 23 33 0 0 chr12 70925111 70925141 -73357348 + AT_rich Low_complexity Low_complexity 1 30 0 1686 179 14 7 chr12 70925341 70925645 -73356844 - AluJo SINE Alu 0 306 1 23 0 0 0 chr12 70925648 70925671 -73356818 + AT_rich Low_complexity Low_complexity 1 23 0 420 324 76 48 chr12 70926292 70926711 -73355778 - L1MEd LINE L1 -5286 833 484 819 139 8 16 chr12 70927611 70927740 -73354749 - AluSc SINE Alu -61 248 121 1652 113 28 41 chr12 70927771 70928062 -73354427 - AluSg SINE Alu -23 287 1 371 318 71 37 chr12 70928093 70928142 -73354347 + L1MC/D LINE L1 5097 5143 -1003 3379 66 0 20 chr12 70928142 70928599 -73353890 + LTR7 LTR ERV1 1 448 -2 371 318 71 37 chr12 70928599 70928845 -73353644 + L1MC/D LINE L1 5143 5402 -744 9602 167 25 18 chr12 70928881 70929385 -73353104 + L1MA9 LINE L1 3265 3764 -2548 207 0 0 0 chr12 70929385 70929408 -73353081 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1955 146 4 0 chr12 70929411 70929692 -73352797 - AluSx SINE Alu -30 282 1 9602 167 25 18 chr12 70929692 70930620 -73351869 + L1MA9 LINE L1 3765 4685 -1627 2736 16 0 16 chr12 70930620 70930935 -73351554 + AluYa5 SINE Alu 1 310 -1 9602 167 25 18 chr12 70930935 70931866 -73350623 + L1MA9 LINE L1 4685 5608 -704 2220 128 36 20 chr12 70931866 70932224 -73350265 - THE1B LTR MaLR 0 364 1 9602 167 25 18 chr12 70932224 70932370 -73350119 + L1MA9 LINE L1 5608 5752 -560 303 28 0 0 chr12 70932370 70932406 -73350083 + (CA)n Simple_repeat Simple_repeat 2 37 0 9602 167 25 18 chr12 70932406 70932801 -73349688 + L1MA9 LINE L1 5752 6290 -22 681 281 66 16 chr12 70932813 70933116 -73349373 + L1MC/D LINE L1 5425 5742 -2066 217 265 0 29 chr12 70934821 70934889 -73347600 - MIR SINE MIR -10 252 187 * 246 364 30 0 chr12 70934881 70934980 -73347509 + MIR3 SINE MIR 98 199 -9 362 325 17 8 chr12 70935164 70935284 -73347205 + MIR SINE MIR 33 153 -55 260 314 48 9 chr12 70935320 70935425 -73347064 + MER5A DNA MER1_type 4 112 -77 423 0 0 0 chr12 70935610 70935657 -73346832 + (TG)n Simple_repeat Simple_repeat 1 47 0 333 205 48 24 chr12 70935870 70935953 -73346536 - L2 LINE L2 0 3272 3188 334 281 32 97 chr12 70936631 70936816 -73345673 - MER5B DNA MER1_type 0 178 6 405 0 0 0 chr12 70936896 70936941 -73345548 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1883 125 0 57 chr12 70936942 70937239 -73345250 - AluSx SINE Alu -32 280 1 267 316 46 46 chr12 70937376 70937572 -73344917 + L2 LINE L2 2825 3020 -252 196 306 48 0 chr12 70937592 70937654 -73344835 - L2 LINE L2 -9 3304 3240 1901 167 88 9 chr12 70937695 70938114 -73344375 - L1MC1 LINE L1 0 6333 5882 1833 94 56 7 chr12 70938114 70938402 -73344087 + THE1B LTR MaLR 1 302 -62 2702 74 3 11 chr12 70938422 70938789 -73343700 - L1PA8 LINE L1 -2 6170 5807 308 314 149 0 chr12 70938864 70938985 -73343504 + L2 LINE L2 3119 3257 -15 2136 138 0 0 chr12 70939355 70939653 -73342836 - AluSx SINE Alu -14 298 1 33 25 0 0 chr12 70942277 70942317 -73340172 + AT_rich Low_complexity Low_complexity 1 40 0 1995 115 7 30 chr12 70942395 70942691 -73339798 - AluSx SINE Alu -13 299 11 2360 104 0 0 chr12 70942705 70943004 -73339485 - AluSx SINE Alu -13 299 1 324 48 0 0 chr12 70943116 70943158 -73339331 + (TG)n Simple_repeat Simple_repeat 2 43 0 5239 222 34 21 chr12 70943427 70943992 -73338497 + L1M4 LINE L1 2615 3171 -2975 2025 146 0 3 chr12 70943992 70944294 -73338195 - AluSx SINE Alu -11 301 1 5239 222 34 21 chr12 70944294 70945270 -73337219 + L1M4 LINE L1 3171 4177 -1969 378 0 0 0 chr12 70946662 70946704 -73335785 + (TG)n Simple_repeat Simple_repeat 1 42 0 823 211 100 43 chr12 70947936 70948489 -73334000 - L1MC4a LINE L1 -83 7725 7205 210 118 0 0 chr12 70948489 70948523 -73333966 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 823 211 100 43 chr12 70948523 70948648 -73333841 - L1MC4a LINE L1 -603 7205 7089 1580 168 0 96 chr12 70948648 70948993 -73333496 - AluJb SINE Alu 0 312 1 823 211 100 43 chr12 70948993 70949634 -73332855 - L1MC4a LINE L1 -719 7089 6217 2034 129 0 21 chr12 70950368 70950654 -73331835 + AluSx SINE Alu 3 282 -30 506 224 35 25 chr12 70951102 70951272 -73331217 + MLT1I LTR MaLR 275 409 0 214 188 0 0 chr12 70951769 70951801 -73330688 - L2 LINE L2 -14 3258 3227 200 289 12 36 chr12 70951834 70951917 -73330572 - L2 LINE L2 -183 3089 3009 2008 146 7 13 chr12 70952425 70952733 -73329756 + AluJb SINE Alu 1 306 -6 217 207 253 11 chr12 70952944 70953031 -73329458 + L2 LINE L2 3200 3307 -6 2287 239 198 65 chr12 70955004 70955315 -73327174 - L2 LINE L2 0 3313 3045 2097 119 13 3 chr12 70955315 70955617 -73326872 + AluSq SINE Alu 1 305 -8 2287 239 198 65 chr12 70955617 70956425 -73326064 - L2 LINE L2 -268 3045 1958 2240 94 3 3 chr12 70956425 70956724 -73325765 - AluSx SINE Alu -12 300 2 2287 239 198 65 chr12 70956724 70956998 -73325491 - L2 LINE L2 -1355 1958 1722 1609 161 80 7 chr12 70957066 70957352 -73325137 + AluJb SINE Alu 3 309 -3 455 173 64 47 chr12 70957362 70957977 -73324512 + L1MC1 LINE L1 6133 6736 -1033 2446 82 0 16 chr12 70957977 70958294 -73324195 + AluSp SINE Alu 1 312 -1 455 173 64 47 chr12 70958294 70958309 -73324180 + L1MC1 LINE L1 6736 7768 -1 772 283 34 8 chr12 70958333 70958570 -73323919 + MIR SINE MIR 20 262 0 29 47 0 0 chr12 70958631 70958674 -73323815 + AT_rich Low_complexity Low_complexity 1 43 0 361 249 25 41 chr12 70959131 70959281 -73323208 + MER5A DNA MER1_type 1 159 -30 2082 203 96 6 chr12 70959786 70960298 -73322191 + MER89 LTR ERV1 1 558 -1 671 224 58 54 chr12 70960420 70960625 -73321864 + MIR SINE MIR 3 208 -54 1719 147 6 19 chr12 70962260 70962572 -73319917 - AluJo SINE Alu -2 310 3 253 226 82 27 chr12 70962581 70962727 -73319762 - L1ME4a LINE L1 0 6121 5968 393 86 0 0 chr12 70963393 70963451 -73319038 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 1789 152 27 3 chr12 70963451 70963748 -73318741 - AluJb SINE Alu -8 304 1 7033 251 65 63 chr12 70963996 70964214 -73318275 + L2 LINE L2 484 700 -2572 3350 89 7 0 chr12 70964214 70964676 -73317813 + L1PA11 LINE L1 5709 6173 -1 276 30 0 0 chr12 70964681 70964714 -73317775 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 40 0 0 chr12 70964713 70964738 -73317751 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 7033 251 65 63 chr12 70964714 70965737 -73316752 + L2 LINE L2 703 1722 -1550 3066 33 0 0 chr12 70965737 70966097 -73316392 - L1PA4 LINE L1 -3 6152 5793 7033 251 65 63 chr12 70966097 70966744 -73315745 + L2 LINE L2 1722 2411 -861 1637 195 14 0 chr12 70966744 70966865 -73315624 + AluJb SINE Alu 1 119 -193 423 0 0 0 chr12 70966865 70966912 -73315577 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1637 195 14 0 chr12 70966912 70967072 -73315417 + AluJb SINE Alu 119 286 -26 7033 251 65 63 chr12 70967072 70967666 -73314823 + L2 LINE L2 2411 3002 -270 428 255 119 64 chr12 70967825 70968060 -73314429 + MLT1L LTR MaLR 368 615 0 872 141 0 40 chr12 70968976 70969125 -73313364 - FLAM_C SINE Alu 0 143 1 1976 155 0 16 chr12 70969198 70969515 -73312974 + AluJb SINE Alu 1 312 0 209 217 50 0 chr12 70969543 70969603 -73312886 + (TA)n Simple_repeat Simple_repeat 2 64 0 257 271 43 64 chr12 70969700 70969840 -73312649 + L1ME4a LINE L1 5981 6117 -4 2652 48 0 3 chr12 70970050 70970362 -73312127 - AluY SINE Alu 0 311 1 223 271 43 0 chr12 70970480 70970550 -73311939 - MIR3 SINE MIR -14 194 122 2413 96 0 0 chr12 70970707 70971009 -73311480 + AluSx SINE Alu 3 304 -8 1370 181 9 151 chr12 70971059 70971495 -73310994 - MLT1A2 LTR MaLR 0 374 1 248 322 137 21 chr12 70971834 70972163 -73310326 + L2 LINE L2 1990 2356 -958 265 307 114 89 chr12 70972397 70972451 -73310038 + L2 LINE L2 2985 3036 -236 2336 191 26 11 chr12 70972451 70972911 -73309578 + MLT1C LTR MaLR 1 467 0 265 307 114 89 chr12 70972911 70973136 -73309353 + L2 LINE L2 3036 3271 -1 231 286 16 0 chr12 70973163 70973226 -73309263 - MIR SINE MIR 0 262 199 343 175 225 0 chr12 70973238 70973318 -73309171 - MER21B LTR ERV1 -109 754 657 1010 273 65 48 chr12 70973330 70973686 -73308803 - MER21B LTR ERV1 -157 706 345 1529 246 66 62 chr12 70974235 70974844 -73307645 - L1ME3A LINE L1 0 6170 5560 1090 153 88 9 chr12 70974850 70975078 -73307411 - MER45B DNA AcHobo -9 1031 786 219 250 50 0 chr12 70975087 70975147 -73307342 - MIR SINE MIR -49 213 151 1317 120 5 0 chr12 70975164 70975355 -73307134 - AluSp SINE Alu -1 312 121 8338 101 59 27 chr12 70975382 70976700 -73305789 - SVA Other Other 0 1386 27 1616 181 47 9 chr12 70976700 70977021 -73305468 - MER45B DNA AcHobo -241 799 467 2313 88 3 3 chr12 70977028 70977333 -73305156 + AluSc SINE Alu 1 305 -4 1354 184 40 29 chr12 70977343 70977460 -73305029 + AluJo SINE Alu 21 135 -177 2070 99 14 10 chr12 70977460 70977752 -73304737 + AluSq SINE Alu 3 295 -18 1354 184 40 29 chr12 70977752 70977906 -73304583 + AluJo SINE Alu 135 295 -17 2313 231 2 25 chr12 70977906 70978382 -73304107 - MER45B DNA AcHobo -574 466 2 804 267 66 42 chr12 70978387 70978565 -73303924 - L1ME3A LINE L1 -635 5527 5355 2315 99 13 0 chr12 70978565 70978867 -73303622 - AluSp SINE Alu -4 309 4 804 267 66 42 chr12 70978867 70979254 -73303235 - L1ME3A LINE L1 -807 5355 4951 577 149 8 6 chr12 70979535 70979790 -73302699 + AluJb SINE Alu 1 304 -8 253 307 119 34 chr12 70980254 70980430 -73302059 + L2 LINE L2 2856 3046 -226 214 136 0 45 chr12 70980426 70980470 -73302019 + MIR SINE MIR 221 262 0 * 2422 63 7 7 chr12 70980623 70980922 -73301567 + AluSq SINE Alu 1 299 -14 715 73 10 0 chr12 70982183 70982279 -73300210 - L1MB2 LINE L1 -5 6166 6070 1978 171 59 3 chr12 70982280 70982654 -73299835 - MER57A LTR ERV1 0 403 9 3877 138 54 31 chr12 70982659 70982877 -73299612 - L1MB2 LINE L1 -100 6071 5859 1949 145 3 7 chr12 70982877 70983180 -73299309 - AluJb SINE Alu -10 302 1 3877 138 54 31 chr12 70983180 70983701 -73298788 - L1MB2 LINE L1 -312 5859 5315 * 5415 138 55 9 chr12 70983689 70984613 -73297876 - L1MC1 LINE L1 -13 6320 5354 1973 170 3 3 chr12 70984623 70984935 -73297554 - AluJb SINE Alu 0 312 1 1871 197 67 7 chr12 70984940 70985357 -73297132 + L1 LINE L1 4883 5324 -822 656 209 64 6 chr12 70985363 70985535 -73296954 + L1M4 LINE L1 5186 5367 -779 937 195 0 0 chr12 70985539 70985698 -73296791 + AluJb SINE Alu 140 298 -14 5590 180 53 20 chr12 70985713 70986514 -73295975 - L1MB2 LINE L1 -1311 4835 3977 2394 137 103 2 chr12 70986514 70986923 -73295566 + LTR47A LTR ERVL 1 450 -2 5590 180 53 20 chr12 70986923 70987342 -73295147 - L1MB2 LINE L1 -2169 3977 3574 2563 113 22 11 chr12 70987403 70987774 -73294715 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr12 70988089 70988113 -73294376 + AT_rich Low_complexity Low_complexity 1 24 0 1076 204 311 6 chr12 70988290 70988618 -73293871 - MER65C LTR ERV1 0 461 34 916 174 41 6 chr12 70988753 70988925 -73293564 - MER44D DNA MER2_type -161 448 1 235 268 0 0 chr12 70989134 70989190 -73293299 + MIR SINE MIR 95 150 -112 348 250 0 0 chr12 70989245 70989313 -73293176 - AluJ/FLAM SINE Alu -234 68 1 1867 136 28 7 chr12 70989584 70989871 -73292618 + AluSg SINE Alu 1 293 -17 1385 142 45 39 chr12 70990020 70990357 -73292132 + SVA Other Other 432 770 -616 21 0 0 0 chr12 70990445 70990466 -73292023 + AT_rich Low_complexity Low_complexity 1 21 0 780 259 117 36 chr12 70990606 70990918 -73291571 - L1ME LINE L1 -322 5799 5449 1076 236 37 0 chr12 70990918 70991134 -73291355 - MER58A DNA MER1_type 0 224 1 780 259 117 36 chr12 70991134 70991207 -73291282 - L1ME LINE L1 -672 5449 5383 2789 167 73 49 chr12 70991484 70992035 -73290454 - MLT1F1 LTR MaLR -3 564 1 259 217 142 75 chr12 70992079 70992185 -73290304 - MLT1F1-int LTR MaLR -65 1306 1194 2294 73 10 33 chr12 70992455 70992757 -73289732 - AluSc SINE Alu -14 295 1 2468 79 0 0 chr12 70992866 70993171 -73289318 - AluY SINE Alu -6 305 1 561 269 81 29 chr12 70993174 70993581 -73288908 - MLT1F1-int LTR MaLR -820 551 2 1785 225 87 27 chr12 70993587 70993905 -73288584 - MLT1F1 LTR MaLR -11 556 236 937 206 44 13 chr12 70993905 70994133 -73288356 + MER106A DNA MER1_type 2 236 0 1785 225 87 27 chr12 70994133 70994326 -73288163 - MLT1F1 LTR MaLR -331 236 56 1340 274 157 13 chr12 70994326 70994881 -73287608 - L2 LINE L2 -361 2953 2319 279 315 125 5 chr12 70995149 70995349 -73287140 - L1ME4a LINE L1 -5 6116 5893 1732 156 30 0 chr12 70995484 70995754 -73286735 + AluJb SINE Alu 1 278 -34 225 0 0 0 chr12 70995755 70995780 -73286709 + (TC)n Simple_repeat Simple_repeat 1 25 0 438 188 0 0 chr12 70995805 70995885 -73286604 + FAM SINE Alu 12 91 -94 205 359 17 97 chr12 70996668 70996905 -73285584 - L2 LINE L2 -23 3249 3032 22 35 0 0 chr12 70998650 70998679 -73283810 + AT_rich Low_complexity Low_complexity 1 29 0 475 275 6 39 chr12 70999048 70999208 -73283281 + MIR3 SINE MIR 48 201 -7 1659 173 10 27 chr12 70999581 70999882 -73282607 + AluJo SINE Alu 5 300 -12 1836 152 7 7 chr12 71000403 71000692 -73281797 + AluJb SINE Alu 3 291 -21 204 40 0 0 chr12 71000719 71000744 -73281745 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 189 107 0 0 chr12 71001238 71001266 -73281223 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 244 308 0 0 chr12 71001266 71001331 -73281158 + Tigger5 DNA MER2_type 8 72 -2251 486 150 0 12 chr12 71001388 71001468 -73281021 + Tigger5 DNA MER2_type 2245 2323 0 2019 140 0 13 chr12 71001643 71001957 -73280532 - AluJo SINE Alu -2 310 1 782 288 109 52 chr12 71002306 71002764 -73279725 - MLT1J LTR MaLR -8 503 20 24 32 0 0 chr12 71003965 71003996 -73278493 + AT_rich Low_complexity Low_complexity 1 31 0 4910 234 73 47 chr12 71004333 71004899 -73277590 - L1MEc LINE L1 -4475 1921 1371 739 171 51 0 chr12 71004899 71005016 -73277473 - FLAM_A SINE Alu -10 123 1 4910 234 73 47 chr12 71005016 71006294 -73276195 - L1MEc LINE L1 -5025 1371 29 25 0 0 0 chr12 71007202 71007227 -73275262 + AT_rich Low_complexity Low_complexity 1 25 0 2353 95 0 0 chr12 71007943 71008238 -73274251 + AluSc SINE Alu 1 295 -14 2678 127 13 3 chr12 71008787 71009173 -73273316 - MLT1B LTR MaLR 0 390 1 406 284 77 24 chr12 71009311 71009480 -73273009 + MIR SINE MIR 18 195 -67 6696 25 6 375 chr12 71009552 71011708 -73270781 - SVA Other Other 0 1386 28 453 361 39 23 chr12 71013944 71014254 -73268235 - L1MEd LINE L1 -5364 755 441 187 376 128 8 chr12 71014535 71014668 -73267821 + L2 LINE L2 2595 2743 -571 491 264 185 6 chr12 71015182 71015360 -73267129 - MER63A DNA MER1_type 0 210 1 1619 221 115 19 chr12 71015945 71016362 -73266127 + LTR40b LTR ERVL 6 462 0 5120 229 75 41 chr12 71016601 71016652 -73265837 - L1MEc LINE L1 -3337 2878 2830 180 0 0 0 chr12 71016652 71016672 -73265817 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5120 229 75 41 chr12 71016672 71018001 -73264488 - L1MEc LINE L1 -3385 2830 1548 739 171 51 0 chr12 71018001 71018118 -73264371 - FLAM_A SINE Alu -10 123 1 5120 229 75 41 chr12 71018118 71019396 -73263093 - L1MEc LINE L1 -4667 1548 29 25 0 0 0 chr12 71020304 71020329 -73262160 + AT_rich Low_complexity Low_complexity 1 25 0 2353 95 0 0 chr12 71021045 71021340 -73261149 + AluSc SINE Alu 1 295 -14 2678 127 13 3 chr12 71021889 71022275 -73260214 - MLT1B LTR MaLR 0 390 1 406 284 77 24 chr12 71022413 71022582 -73259907 + MIR SINE MIR 18 195 -67 640 115 370 30 chr12 71022711 71022911 -73259578 + Charlie1 DNA MER1_type 2490 2757 -4 2232 105 7 0 chr12 71023128 71023422 -73259067 + AluSx SINE Alu 1 296 -16 226 365 103 13 chr12 71024852 71025008 -73257481 - MIR SINE MIR -69 193 24 447 218 45 1 chr12 71025180 71025298 -73257191 - L1MA10 LINE L1 -1 6333 6051 191 279 66 0 chr12 71026167 71026228 -73256261 - L2 LINE L2 -66 3247 3183 189 286 242 22 chr12 71026293 71026706 -73255783 - L2 LINE L2 -251 3062 2551 2514 60 0 0 chr12 71026809 71027110 -73255379 + AluY SINE Alu 1 301 -10 939 189 6 30 chr12 71027626 71027795 -73254694 - FRAM SINE Alu -1 165 1 452 321 157 24 chr12 71028394 71028777 -73253712 + L2 LINE L2 1384 1817 -1497 4025 168 89 35 chr12 71028819 71029538 -73252951 - L1MB5 LINE L1 -9 6165 5390 2264 114 7 0 chr12 71029538 71029845 -73252644 - AluSx SINE Alu -3 309 1 4025 168 89 35 chr12 71029845 71029990 -73252499 - L1MB5 LINE L1 -784 5390 5254 822 238 111 118 chr12 71030006 71030140 -73252349 - HAL1 LINE L1 -1286 1221 1088 2554 71 0 0 chr12 71030140 71030451 -73252038 - AluY SINE Alu 0 311 1 822 238 111 118 chr12 71030451 71031036 -73251453 - HAL1 LINE L1 -1419 1088 507 870 298 56 10 chr12 71031071 71031376 -73251113 + L2 LINE L2 2426 2744 -570 854 181 7 19 chr12 71031410 71031565 -73250924 - FAM SINE Alu -15 170 18 312 276 104 30 chr12 71031597 71031731 -73250758 + L2 LINE L2 3163 3306 -7 * 345 289 0 0 chr12 71031706 71031782 -73250707 - L2 LINE L2 -6 3266 3191 2146 114 14 0 chr12 71033069 71033359 -73249130 + AluSg SINE Alu 1 294 -16 255 241 120 56 chr12 71033715 71033823 -73248666 - MER103 DNA DNA -7 159 45 309 269 86 21 chr12 71033993 71034086 -73248403 - L2 LINE L2 -14 3258 3160 1917 124 14 3 chr12 71034589 71034879 -73247610 - AluJb SINE Alu -10 302 10 1333 145 27 36 chr12 71037132 71037353 -73245136 + MER20 DNA MER1_type 1 219 0 205 324 0 0 chr12 71037400 71037471 -73245018 + G-rich Low_complexity Low_complexity 1 71 0 23 0 0 0 chr12 71037777 71037800 -73244689 + AT_rich Low_complexity Low_complexity 1 23 0 805 299 14 4 chr12 71037890 71038171 -73244318 + AluSx SINE Alu 11 294 -18 494 200 42 0 chr12 71038197 71038292 -73244197 + L1M4 LINE L1 21 119 -6423 313 300 0 12 chr12 71038657 71038737 -73243752 - MER2 DNA MER2_type 0 345 267 221 299 0 0 chr12 71039450 71039517 -73242972 + C-rich Low_complexity Low_complexity 1 67 0 1414 169 0 0 chr12 71039517 71039736 -73242753 + AluSc SINE Alu 82 300 -9 2078 105 0 46 chr12 71039736 71040042 -73242447 + AluSp SINE Alu 6 297 -16 2007 142 4 0 chr12 71040491 71040801 -73241688 - AluSx SINE Alu 0 311 1 890 226 47 108 chr12 71040897 71041238 -73241251 - Charlie8 DNA MER1_type -325 2092 1773 2487 63 0 3 chr12 71041244 71041546 -73240943 + AluY SINE Alu 1 301 -10 13749 140 14 15 chr12 71041646 71042856 -73239633 - L1M1 LINE L1 -5413 2152 942 2282 106 6 6 chr12 71042856 71043168 -73239321 - AluSx SINE Alu 0 312 1 13749 140 14 15 chr12 71043168 71044091 -73238398 - L1M1 LINE L1 -6623 942 20 4494 227 27 39 chr12 71044195 71045670 -73236819 - L1P3 LINE L1 -4200 2261 804 417 136 57 11 chr12 71045666 71045754 -73236735 - L1M1 LINE L1 -3301 4264 4173 * 1758 81 24 54 chr12 71045774 71045956 -73236533 - L1M1 LINE L1 -4918 2647 2461 2073 96 3 31 chr12 71045956 71046281 -73236208 - AluSx SINE Alu 0 317 1 1758 81 24 54 chr12 71046281 71046356 -73236133 - L1M1 LINE L1 -5104 2461 2397 2667 39 0 0 chr12 71046356 71046665 -73235824 - AluYa5 SINE Alu -2 309 1 1758 81 24 54 chr12 71046665 71046703 -73235786 - L1M1 LINE L1 -5168 2397 2359 748 226 0 44 chr12 71046803 71046984 -73235505 - Charlie8 DNA MER1_type -723 1694 1522 348 274 60 84 chr12 71048079 71048447 -73234042 + L1M4 LINE L1 3094 3452 -2694 361 277 68 20 chr12 71048875 71049023 -73233466 + L2 LINE L2 3159 3313 0 1121 333 57 58 chr12 71049224 71049301 -73233188 + L3 LINE CR1 765 841 -736 2227 108 3 7 chr12 71049301 71049607 -73232882 - AluSx SINE Alu -7 305 1 1121 333 57 58 chr12 71049607 71050333 -73232156 + L3 LINE CR1 841 1567 -10 1624 205 3 0 chr12 71051653 71051946 -73230543 + AluJo SINE Alu 5 298 -14 25 51 0 0 chr12 71053085 71053124 -73229365 + AT_rich Low_complexity Low_complexity 1 39 0 2232 106 16 0 chr12 71053249 71053552 -73228937 - AluSg SINE Alu -2 308 1 182 313 0 0 chr12 71053558 71053606 -73228883 + MIR3 SINE MIR 157 204 -4 257 348 0 11 chr12 71053864 71053956 -73228533 + L2 LINE L2 3177 3267 -5 * 297 287 23 0 chr12 71053930 71054017 -73228472 + MIR SINE MIR 63 151 -111 255 280 84 37 chr12 71054668 71054775 -73227714 + L2 LINE L2 3156 3267 -5 306 201 92 150 chr12 71056966 71057015 -73225474 + L1MC5 LINE L1 7451 7501 -460 2286 128 0 0 chr12 71057015 71057327 -73225162 + AluSx SINE Alu 1 312 0 306 201 92 150 chr12 71057327 71057417 -73225072 + L1MC5 LINE L1 7501 7595 -366 2062 131 0 3 chr12 71057417 71057714 -73224775 + AluSx SINE Alu 1 296 -16 306 201 92 150 chr12 71057714 71058060 -73224429 + L1MC5 LINE L1 7595 7909 -52 460 279 82 107 chr12 71058246 71058799 -73223690 + L2 LINE L2 2566 3099 -173 535 200 107 43 chr12 71058890 71059030 -73223459 - MER106B DNA MER1_type -910 149 1 221 324 147 10 chr12 71059078 71059180 -73223309 + L2 LINE L2 3184 3299 -14 834 211 10 103 chr12 71060259 71060463 -73222026 + MER5A DNA MER1_type 1 185 -4 414 249 58 83 chr12 71061408 71061481 -73221008 - MIR SINE MIR -2 260 187 2268 98 0 7 chr12 71061481 71061776 -73220713 + AluSq SINE Alu 1 293 -20 252 86 0 0 chr12 71061776 71061811 -73220678 + (TA)n Simple_repeat Simple_repeat 2 36 0 459 0 0 0 chr12 71061810 71061861 -73220628 + (CA)n Simple_repeat Simple_repeat 2 52 0 414 249 58 83 chr12 71061811 71061991 -73220498 - MIR SINE MIR -73 189 61 351 286 60 36 chr12 71062132 71062300 -73220189 + L2 LINE L2 2722 2893 -421 196 398 47 8 chr12 71062484 71062612 -73219877 + L2 LINE L2 3139 3271 -1 326 338 44 0 chr12 71063197 71063333 -73219156 - MIR SINE MIR -84 178 37 1120 137 0 12 chr12 71063344 71063512 -73218977 - L1PB3 LINE L1 -4 6150 5985 1833 127 0 0 chr12 71064954 71065207 -73217282 + AluSx SINE Alu 1 253 -59 502 222 189 13 chr12 71065655 71065808 -73216681 + MER5A DNA MER1_type 1 180 -9 339 292 28 80 chr12 71065809 71066059 -73216430 + L1ME LINE L1 5536 5772 -349 249 217 0 17 chr12 71067253 71067313 -73215176 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 287 192 0 0 chr12 71067338 71067390 -73215099 + MLT1J LTR MaLR 1 52 -459 646 140 40 0 chr12 71067461 71067561 -73214928 + L1M1 LINE L1 1 104 -7461 850 135 0 23 chr12 71117590 71117723 -73164766 - FLAM_C SINE Alu -3 130 1 2285 117 3 0 chr12 71117751 71118051 -73164438 + AluSq SINE Alu 1 301 -12 272 319 32 0 chr12 71118101 71118195 -73164294 - MIR3 SINE MIR -3 205 109 378 42 0 0 chr12 71118228 71118276 -73164213 + (CA)n Simple_repeat Simple_repeat 2 49 0 231 204 0 0 chr12 71119028 71119082 -73163407 + CT-rich Low_complexity Low_complexity 2 55 0 2195 120 0 0 chr12 71119072 71119381 -73163108 - AluSx SINE Alu -25 287 1 432 268 74 26 chr12 71119793 71119983 -73162506 - MIR SINE MIR -2 260 62 532 283 40 0 chr12 71120188 71120340 -73162149 + L2 LINE L2 2190 2347 -967 338 178 112 28 chr12 71120445 71120552 -73161937 - Charlie2a DNA MER1_type -1273 1589 1474 240 35 0 0 chr12 71120602 71120631 -73161858 + (TGG)n Simple_repeat Simple_repeat 1 29 0 303 296 102 28 chr12 71120666 71120842 -73161647 - MLT1I LTR MaLR -123 286 98 591 112 0 0 chr12 71122061 71122150 -73160339 + (TA)n Simple_repeat Simple_repeat 1 89 0 2293 100 0 3 chr12 71122150 71122450 -73160039 - AluSg SINE Alu -11 299 1 5955 86 11 9 chr12 71123610 71124550 -73157939 - L1PB1 LINE L1 -6 6145 5204 1014 346 35 7 chr12 71125188 71125645 -73156844 - L3 LINE CR1 -1 1576 1107 29 0 0 0 chr12 71125948 71125977 -73156512 + AT_rich Low_complexity Low_complexity 1 29 0 369 215 11 36 chr12 71126310 71126403 -73156086 + MER5B DNA MER1_type 1 100 -89 197 231 154 0 chr12 71127171 71127223 -73155266 - L2 LINE L2 0 3313 3254 24 67 0 0 chr12 71128010 71128055 -73154434 + AT_rich Low_complexity Low_complexity 1 45 0 41970 38 4 6 chr12 71128140 71134305 -73148184 + L1PA4 LINE L1 4 6152 -3 1625 117 11 50 chr12 71134328 71134610 -73147879 + L1PA15 LINE L1 5895 6165 0 2464 60 0 10 chr12 71134755 71135057 -73147432 - AluY SINE Alu -12 299 1 336 214 82 10 chr12 71135496 71135594 -73146895 + MER117 DNA MER1_type 44 148 -49 326 272 191 19 chr12 71136075 71136231 -73146258 + MIR3 SINE MIR 15 202 -6 2187 116 0 23 chr12 71136674 71136977 -73145512 - AluSx SINE Alu -16 296 1 854 289 161 11 chr12 71136977 71137330 -73145159 - L2 LINE L2 -6 3307 2902 189 0 0 0 chr12 71137698 71137719 -73144770 + (TAGTG)n Simple_repeat Simple_repeat 1 21 0 448 271 254 11 chr12 71137729 71137910 -73144579 + MIR SINE MIR 28 252 -10 186 398 53 20 chr12 71137999 71138243 -73144246 + L2 LINE L2 1099 1350 -1964 2477 140 10 0 chr12 71138351 71138764 -73143725 - L1MA2 LINE L1 0 6304 5888 317 148 66 0 chr12 71138998 71139059 -73143430 - MER20 DNA MER1_type -154 65 1 499 341 63 45 chr12 71139245 71139905 -73142584 + L2 LINE L2 1815 3271 -1 1059 295 83 76 chr12 71139954 71140724 -73141765 + L2 LINE L2 2342 3139 -174 1725 152 21 28 chr12 71140724 71141014 -73141475 - AluJb SINE Alu -23 289 2 1059 295 83 76 chr12 71141014 71141188 -73141301 + L2 LINE L2 3139 3310 -3 784 197 42 84 chr12 71141327 71141613 -73140876 + MER31A LTR ERV1 1 418 -96 2229 118 0 31 chr12 71141613 71141936 -73140553 - AluSq SINE Alu 0 313 1 784 197 42 84 chr12 71141936 71142026 -73140463 + MER31A LTR ERV1 418 510 -4 2860 10 0 0 chr12 71142385 71142695 -73139794 + AluYb8 SINE Alu 1 310 -8 465 314 24 24 chr12 71143944 71144113 -73138376 + MIR3 SINE MIR 23 191 -17 249 353 132 37 chr12 71146807 71147466 -73135023 + L2 LINE L2 2491 3271 -1 192 312 43 97 chr12 71148165 71148200 -73134289 + L3b LINE CR1 1290 1325 -258 2603 44 0 13 chr12 71148200 71148515 -73133974 + AluY SINE Alu 1 311 0 192 312 43 97 chr12 71148515 71148665 -73133824 + L3b LINE CR1 1325 1465 -118 26 101 0 0 chr12 71148727 71148816 -73133673 + AT_rich Low_complexity Low_complexity 1 89 0 542 284 32 53 chr12 71149571 71149853 -73132636 - AluJb SINE Alu 0 312 37 1575 243 100 25 chr12 71150014 71150758 -73131731 + L2 LINE L2 2509 3313 0 225 234 0 117 chr12 71150899 71150976 -73131513 + MIR SINE MIR 2 69 -193 973 243 38 8 chr12 71151021 71151260 -73131229 - MIR SINE MIR -14 248 3 207 309 48 0 chr12 71151262 71151346 -73131143 + MIR SINE MIR 172 259 -3 182 36 0 36 chr12 71151416 71151444 -73131045 + (TA)n Simple_repeat Simple_repeat 1 27 0 2655 162 44 44 chr12 71151839 71152104 -73130385 + MER44D DNA MER2_type 2 266 -2221 1991 153 14 0 chr12 71152104 71152399 -73130090 - AluJo SINE Alu -13 299 1 2655 162 44 44 chr12 71152399 71152513 -73129976 + MER44D DNA MER2_type 266 379 -2108 2030 147 0 0 chr12 71152513 71152806 -73129683 - AluJb SINE Alu -19 293 1 2655 162 44 44 chr12 71152806 71152974 -73129515 + MER44D DNA MER2_type 378 605 0 216 0 0 0 chr12 71153450 71153474 -73129015 + (T)n Simple_repeat Simple_repeat 1 24 0 209 290 16 0 chr12 71154103 71154165 -73128324 + L2 LINE L2 3165 3227 -86 1843 110 10 73 chr12 71154676 71155017 -73127472 - AluSx SINE Alu 0 322 1 27 29 0 0 chr12 71157561 71157595 -73124894 + AT_rich Low_complexity Low_complexity 1 34 0 198 217 65 0 chr12 71158200 71158246 -73124243 - L2 LINE L2 0 3313 3265 297 282 64 23 chr12 71159312 71159532 -73122957 + L1 LINE L1 4297 4525 -1621 498 288 0 8 chr12 71159541 71159666 -73122823 - L2 LINE L2 -23 3290 3167 4766 190 35 40 chr12 71159682 71160112 -73122377 + L1MD1 LINE L1 4319 4750 -1492 1611 174 31 31 chr12 71160112 71160399 -73122090 + AluJb SINE Alu 1 287 -25 4766 190 35 40 chr12 71160399 71161902 -73120587 + L1MD1 LINE L1 4750 6237 -5 386 253 30 10 chr12 71161912 71162011 -73120478 - MER5B DNA MER1_type -67 111 11 1011 174 30 4 chr12 71162011 71162241 -73120248 + MER119 DNA MER1_type 348 583 0 260 235 0 37 chr12 71162317 71162398 -73120091 - MLT1J LTR MaLR -332 179 102 307 250 24 12 chr12 71163029 71163113 -73119376 + L2 LINE L2 3227 3311 -2 447 318 32 0 chr12 71164088 71164242 -73118247 + MIR SINE MIR 96 254 -8 229 369 54 23 chr12 71165055 71165185 -73117304 - L2 LINE L2 -5 3267 3134 198 0 0 0 chr12 71165477 71165499 -73116990 + (T)n Simple_repeat Simple_repeat 1 22 0 1809 145 0 21 chr12 71165617 71165899 -73116590 - AluJb SINE Alu 0 312 37 313 248 124 25 chr12 71167816 71167937 -73114552 - MIR SINE MIR -3 259 127 609 270 115 0 chr12 71167939 71168113 -73114376 - MIR SINE MIR -67 195 2 21 71 0 0 chr12 71171274 71171316 -73111173 + AT_rich Low_complexity Low_complexity 1 42 0 1518 161 63 28 chr12 71171498 71171783 -73110706 - AluJo SINE Alu -17 295 1 534 276 89 8 chr12 71171988 71172193 -73110296 + MIR SINE MIR 25 233 -29 1323 275 122 26 chr12 71172437 71172613 -73109876 + L2 LINE L2 2560 2718 -595 2209 125 0 0 chr12 71172613 71172910 -73109579 - AluSq SINE Alu -16 297 1 1323 275 122 26 chr12 71172910 71173406 -73109083 + L2 LINE L2 2718 3313 0 885 303 44 4 chr12 71174172 71174423 -73108066 - MIR SINE MIR 0 262 2 1663 110 0 0 chr12 71176831 71177049 -73105440 + AluSg/x SINE Alu 85 302 -8 25 75 0 0 chr12 71178680 71178733 -73103756 + AT_rich Low_complexity Low_complexity 1 53 0 296 211 13 0 chr12 71179048 71179124 -73103365 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 2365 88 20 3 chr12 71179164 71179470 -73103019 - AluSq SINE Alu -1 312 2 308 360 43 21 chr12 71179817 71180003 -73102486 + L2 LINE L2 3079 3268 -4 204 158 0 0 chr12 71180043 71180081 -73102408 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 363 154 0 0 chr12 71180087 71180152 -73102337 + GA-rich Low_complexity Low_complexity 3 67 0 228 269 0 0 chr12 71180145 71180238 -73102251 + (TGGA)n Simple_repeat Simple_repeat 2 94 0 * 465 363 50 58 chr12 71180293 71180635 -73101854 + L2 LINE L2 2934 3272 0 1010 243 105 9 chr12 71182226 71182559 -73099930 + MLT1J LTR MaLR 3 367 -144 319 341 110 11 chr12 71183317 71183499 -73098990 + MIR3 SINE MIR 3 202 -6 685 307 135 35 chr12 71184009 71184727 -73097762 + L2 LINE L2 2247 3056 -257 1145 237 101 30 chr12 71184907 71185371 -73097118 - LTR33 LTR ERVL 0 521 25 1117 159 44 40 chr12 71185552 71185779 -73096710 + L1MB5 LINE L1 5939 6166 -8 187 268 18 18 chr12 71186114 71186170 -73096319 + MER5A DNA MER1_type 8 63 -126 240 308 0 0 chr12 71186456 71186521 -73095968 - L2 LINE L2 -17 3255 3191 33160 79 8 62 chr12 71186758 71193261 -73089228 + L1PA5 LINE L1 12 6147 -7 183 156 0 0 chr12 71193269 71193301 -73089188 + A-rich Low_complexity Low_complexity 1 32 0 15239 90 1 1 chr12 71193335 71196336 -73086153 + L1PA7 LINE L1 3179 6153 -1 24 0 0 0 chr12 71197527 71197551 -73084938 + AT_rich Low_complexity Low_complexity 1 24 0 2435 226 70 43 chr12 71197900 71198089 -73084400 - L1ME3A LINE L1 -5 6165 5983 2727 10 0 0 chr12 71198089 71198386 -73084103 - AluYa5 SINE Alu -14 297 1 2435 226 70 43 chr12 71198386 71198631 -73083858 - L1ME3A LINE L1 -187 5983 5746 3459 115 28 12 chr12 71198631 71199203 -73083286 + L1MA4 LINE L1 5715 6295 -5 2435 226 70 43 chr12 71199203 71199639 -73082850 - L1ME3A LINE L1 -424 5746 5266 36 40 0 0 chr12 71199639 71199689 -73082800 + AT_rich Low_complexity Low_complexity 1 50 0 760 268 98 10 chr12 71199694 71200094 -73082395 - L1ME3A LINE L1 -874 5272 4838 306 250 105 41 chr12 71200159 71200331 -73082158 - L1ME3A LINE L1 -1301 4845 4663 28 0 0 0 chr12 71200493 71200521 -73081968 + AT_rich Low_complexity Low_complexity 1 28 0 2076 133 16 48 chr12 71200616 71200992 -73081497 + THE1B LTR MaLR 1 364 0 1957 162 3 3 chr12 71201020 71201317 -73081172 - AluJo SINE Alu -14 298 2 5751 165 12 5 chr12 71201465 71202544 -73079945 + L1P LINE L1 1744 2830 -3316 214 377 54 23 chr12 71202728 71202858 -73079631 - L2 LINE L2 -5 3267 3134 1493 188 59 14 chr12 71203149 71203320 -73079169 - AluJo SINE Alu -10 302 111 198 0 0 0 chr12 71203320 71203342 -73079147 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1493 188 59 14 chr12 71203342 71203458 -73079031 - AluJo SINE Alu -201 111 2 284 280 60 20 chr12 71203992 71204092 -73078397 - MIR SINE MIR -42 220 117 235 150 33 17 chr12 71204884 71204944 -73077545 + CT-rich Low_complexity Low_complexity 4 64 0 299 318 103 0 chr12 71204955 71205062 -73077427 - L2 LINE L2 -16 3297 3180 22077 137 23 14 chr12 71205068 71209738 -73072751 + L1MA3 LINE L1 15 4788 -2936 2013 134 42 33 chr12 71209738 71210097 -73072392 - THE1B LTR MaLR 0 364 3 22077 137 23 14 chr12 71210097 71213061 -73069428 + L1MA3 LINE L1 4788 7724 0 247 310 14 0 chr12 71213229 71213300 -73069189 + MIR3 SINE MIR 90 161 -47 736 200 197 70 chr12 71213317 71213391 -73069098 - HsTC2 DNA Tc2 -3 1895 1832 1633 161 7 48 chr12 71213391 71213706 -73068783 + AluJb SINE Alu 3 305 0 736 200 197 70 chr12 71213706 71214022 -73068467 - HsTC2 DNA Tc2 -66 1832 1284 2184 118 71 24 chr12 71214315 71214696 -73067793 - Tigger2a DNA MER2_type -35 399 1 285 250 16 40 chr12 71214697 71214821 -73067668 + (TA)n Simple_repeat Simple_repeat 1 121 0 15122 146 13 7 chr12 71215227 71218655 -73063834 + L1PA11 LINE L1 2719 6172 -2 22 35 0 0 chr12 71219613 71219642 -73062847 + AT_rich Low_complexity Low_complexity 1 29 0 252 238 0 62 chr12 71219686 71219743 -73062746 + L3 LINE CR1 709 761 -816 2213 120 13 0 chr12 71219743 71220044 -73062445 + AluSx SINE Alu 1 305 -7 252 238 0 62 chr12 71220044 71220066 -73062423 + L3 LINE CR1 761 783 -794 274 222 111 0 chr12 71220167 71220239 -73062250 - MER5B DNA MER1_type -98 80 1 295 276 51 31 chr12 71221502 71221600 -73060889 + MIR SINE MIR 47 146 -62 1712 166 3 49 chr12 71221606 71221931 -73060558 + AluJo SINE Alu 1 310 -2 241 311 34 34 chr12 71221964 71222083 -73060406 + MIR SINE MIR 138 256 -6 335 213 24 16 chr12 71223818 71223945 -73058544 + GA-rich Low_complexity Low_complexity 4 131 0 479 288 92 96 chr12 71224079 71224590 -73057899 - L2 LINE L2 -1 3312 2804 3476 56 0 7 chr12 71224792 71225242 -73057247 + LTR7 LTR ERV1 2 448 -2 181 247 86 25 chr12 71225350 71225431 -73057058 + L3b LINE CR1 1214 1299 -284 275 306 208 6 chr12 71225443 71225626 -73056863 + MIR SINE MIR 17 236 -26 237 350 146 15 chr12 71226479 71226616 -73055873 - L2 LINE L2 -1 3271 3117 1701 153 27 30 chr12 71226736 71227036 -73055453 + AluJb SINE Alu 1 299 -13 432 212 302 6 chr12 71227147 71227326 -73055163 - MIR SINE MIR -30 232 1 22 35 0 0 chr12 71228265 71228294 -73054195 + AT_rich Low_complexity Low_complexity 1 29 0 241 298 24 12 chr12 71229159 71229243 -73053246 - MIR3 SINE MIR -13 195 111 2187 163 75 0 chr12 71229568 71229966 -73052523 + MSTA LTR MaLR 1 428 0 2222 187 75 101 chr12 71230050 71230782 -73051707 + MER50 LTR ERV1 22 734 0 469 272 74 56 chr12 71231092 71231415 -73051074 - MER102a DNA MER1_type 0 330 2 299 296 0 11 chr12 71231703 71231791 -73050698 - MER117 DNA MER1_type -110 87 1 1675 250 80 52 chr12 71232027 71232590 -73049899 + MLT1E2 LTR MaLR 19 624 0 2602 247 59 14 chr12 71232789 71233690 -73048799 + L1ME3A LINE L1 5227 6168 -2 2519 72 0 0 chr12 71234158 71234462 -73048027 + AluY SINE Alu 1 304 -7 811 236 0 6 chr12 71234761 71234939 -73047550 - FRAM SINE Alu -2 174 1 652 254 97 6 chr12 71236373 71236538 -73045951 - MIR SINE MIR -51 211 32 3217 76 37 0 chr12 71236601 71237037 -73045452 + L1PA11 LINE L1 5723 6174 0 202 167 95 0 chr12 71237165 71237207 -73045282 - L2 LINE L2 -4 3309 3264 * 380 259 112 0 chr12 71237176 71237292 -73045197 - MIR SINE MIR -13 249 121 * 1011 275 75 21 chr12 71237290 71237664 -73044825 + L2 LINE L2 2015 2408 -906 606 254 1 34 chr12 71237933 71238068 -73044421 + L1ME LINE L1 5357 5486 -684 2516 106 28 14 chr12 71238068 71238427 -73044062 + THE1B LTR MaLR 1 364 0 606 254 1 34 chr12 71238427 71238492 -73043997 + L1ME LINE L1 5486 5552 -618 227 313 0 0 chr12 71238645 71238712 -73043777 + MLT1K LTR MaLR 183 249 -339 1774 118 109 32 chr12 71238930 71239278 -73043211 + THE1C LTR MaLR 1 375 0 1261 98 5 5 chr12 71239280 71239474 -73043015 + THE1C-int LTR MaLR 3 196 -1384 300 274 44 15 chr12 71239828 71239963 -73042526 + L1ME LINE L1 5456 5594 -527 265 279 108 67 chr12 71240079 71240756 -73041733 - L1M4 LINE L1 -1155 4991 4287 357 259 162 71 chr12 71241036 71241333 -73041156 + L2 LINE L2 2990 3313 0 307 355 103 13 chr12 71241406 71241561 -73040928 - MIR SINE MIR -58 204 36 260 229 12 0 chr12 71241591 71241674 -73040815 + GA-rich Low_complexity Low_complexity 3 86 0 555 196 58 29 chr12 71243998 71244136 -73038353 + MIR SINE MIR 121 262 0 19106 55 8 6 chr12 71245063 71248325 -73034164 - L1PA5 LINE L1 -2 6152 2884 1183 45 0 0 chr12 71248325 71248481 -73034008 + L1PA5 LINE L1 2712 2867 -3279 2097 118 0 0 chr12 71250134 71250422 -73032067 + AluSg SINE Alu 6 293 -17 582 254 96 64 chr12 71250728 71251008 -73031481 - HsTC2b DNA Tc2 -592 323 35 255 61 0 0 chr12 71251034 71251067 -73031422 + (TATG)n Simple_repeat Simple_repeat 2 34 0 1644 164 36 7 chr12 71251069 71251343 -73031146 - AluJo SINE Alu -30 282 1 483 246 25 0 chr12 71251573 71251691 -73030798 + MER69 DNA AcHobo 27 147 -2379 382 161 0 49 chr12 71251688 71251769 -73030720 + MER69 DNA AcHobo 2450 2526 0 * 233 279 196 30 chr12 71251822 71251990 -73030499 - MIR3 SINE MIR -66 142 6 194 348 108 25 chr12 71253570 71253728 -73028761 - L3 LINE CR1 -13 1564 1394 461 223 19 10 chr12 71253840 71253943 -73028546 + MLT1E LTR MaLR 26 129 -464 264 242 33 11 chr12 71253961 71254052 -73028437 + (TA)n Simple_repeat Simple_repeat 2 94 0 1322 209 80 11 chr12 71254109 71254396 -73028093 + MLT1E LTR MaLR 284 590 -3 585 229 176 6 chr12 71254397 71254567 -73027922 - MIR SINE MIR -49 213 15 243 325 61 9 chr12 71254854 71254968 -73027521 - L3 LINE CR1 -243 1334 1215 314 287 12 24 chr12 71255413 71255580 -73026909 - L1MC4a LINE L1 -1921 5887 5723 1675 128 66 28 chr12 71255715 71256004 -73026485 - AluSx SINE Alu -12 300 1 406 330 210 13 chr12 71257121 71257430 -73025059 + L3 LINE CR1 418 787 -790 323 321 86 29 chr12 71257444 71257584 -73024905 + MIR SINE MIR 4 151 -111 866 288 155 42 chr12 71257766 71258314 -73024175 + L3 LINE CR1 864 1473 -104 1645 190 3 17 chr12 71258600 71258890 -73023599 + AluJo SINE Alu 1 286 -26 656 184 0 0 chr12 71259055 71259164 -73023325 + AluSq/x SINE Alu 4 112 -201 42507 34 1 1 chr12 71259200 71265342 -73017147 + L1PA3 LINE L1 2 6144 -11 1024 124 7 0 chr12 71265344 71265489 -73017000 + AluSp SINE Alu 121 266 -47 629 278 63 20 chr12 71265673 71265928 -73016561 + L2 LINE L2 1240 1505 -1809 25 31 0 0 chr12 71265968 71266000 -73016489 + AT_rich Low_complexity Low_complexity 1 32 0 6431 45 2 7 chr12 71266035 71266854 -73015635 - L1PA2 LINE L1 -1 6154 5340 2626 287 134 13 chr12 71266855 71268031 -73014458 + L2 LINE L2 1571 2889 -425 667 302 34 93 chr12 71268056 71268553 -73013936 + L2 LINE L2 2840 3307 -6 27 29 0 0 chr12 71268929 71268963 -73013526 + AT_rich Low_complexity Low_complexity 1 34 0 329 252 24 138 chr12 71269547 71269629 -73012860 + MIR SINE MIR 50 140 -122 2188 112 0 14 chr12 71269629 71269957 -73012532 + AluSg SINE Alu 5 328 0 329 252 24 138 chr12 71269957 71270082 -73012407 + MIR SINE MIR 140 235 -27 435 87 0 0 chr12 71270131 71270200 -73012289 + (TC)n Simple_repeat Simple_repeat 2 70 0 233 185 92 46 chr12 71270446 71270511 -73011978 - MER113 DNA MER1_type? 0 521 454 282 231 41 83 chr12 71270610 71270731 -73011758 - MER113 DNA MER1_type? -401 120 5 681 268 45 18 chr12 71271923 71272143 -73010346 - L2 LINE L2 0 3313 3088 1769 179 16 7 chr12 71272552 71272860 -73009629 - AluJb SINE Alu 0 312 2 2434 81 0 3 chr12 71274723 71275030 -73007459 + AluY SINE Alu 1 306 -5 1437 109 25 63 chr12 71275300 71275538 -73006951 - MER30 DNA MER1_type -1 229 1 183 42 0 0 chr12 71277680 71277704 -73004785 + (TTA)n Simple_repeat Simple_repeat 1 24 0 228 270 48 0 chr12 71278047 71278110 -73004379 + MIR SINE MIR 123 188 -74 293 305 176 15 chr12 71280717 71280848 -73001641 - MIR3 SINE MIR -41 167 16 228 239 0 0 chr12 71281333 71281379 -73001110 + L2 LINE L2 3258 3303 -10 1805 161 13 19 chr12 71283909 71284219 -72998270 - AluJo SINE Alu -4 308 1 550 214 170 0 chr12 71284459 71284618 -72997871 + MER5A DNA MER1_type 4 189 0 222 37 0 0 chr12 71286110 71286137 -72996352 + (TA)n Simple_repeat Simple_repeat 2 28 0 232 330 19 29 chr12 71287572 71287675 -72994814 - MIR SINE MIR 0 262 161 284 370 133 5 chr12 71287810 71288021 -72994468 - MIR SINE MIR -24 238 1 276 30 0 0 chr12 71288051 71288084 -72994405 + (GA)n Simple_repeat Simple_repeat 1 33 0 2024 130 13 0 chr12 71289389 71289690 -72992799 - AluSx SINE Alu -7 305 1 524 235 189 0 chr12 71289759 71289891 -72992598 + MIR SINE MIR 64 220 -42 239 0 32 0 chr12 71289992 71290023 -72992466 + (TTA)n Simple_repeat Simple_repeat 3 34 0 274 311 6 90 chr12 71290130 71290297 -72992192 - MIR SINE MIR -108 154 2 318 245 0 0 chr12 71291260 71291358 -72991131 + (TA)n Simple_repeat Simple_repeat 2 99 0 296 250 0 0 chr12 71344408 71344476 -72938013 + MER103 DNA DNA 3 70 -96 2211 118 0 3 chr12 71344499 71344803 -72937686 + AluSq SINE Alu 1 303 -10 308 301 65 8 chr12 71344923 71345046 -72937443 + MER94 DNA DNA 5 134 0 430 309 38 29 chr12 71345095 71345305 -72937184 + L3 LINE CR1 1229 1440 -137 261 336 53 9 chr12 71345768 71345881 -72936608 - MIR3 SINE MIR -23 185 68 14333 127 49 7 chr12 71346025 71347207 -72935282 - Tigger1 DNA MER2_type 0 2418 1287 1893 114 15 11 chr12 71347207 71347479 -72935010 - AluSx SINE Alu -13 299 27 14333 127 49 7 chr12 71347479 71348616 -72933873 - Tigger1 DNA MER2_type -1131 1287 1 2433 103 0 0 chr12 71349127 71349485 -72933004 - AluSx SINE Alu 0 358 1 1780 163 0 43 chr12 71350882 71351207 -72931282 + AluJb SINE Alu 1 311 -1 523 272 50 55 chr12 71351478 71351528 -72930961 - MIR3 SINE MIR -3 205 156 418 252 99 54 chr12 71351528 71351770 -72930719 + MER112 DNA MER1_type 1 253 -3 523 272 50 55 chr12 71351770 71351921 -72930568 - MIR3 SINE MIR -52 156 5 241 47 47 0 chr12 71352340 71352383 -72930106 + (CAA)n Simple_repeat Simple_repeat 1 45 0 480 242 46 68 chr12 71353180 71353503 -72928986 + MLT1H LTR MaLR 132 409 0 1004 259 26 71 chr12 71354084 71354462 -72928027 - MLT1J LTR MaLR -8 503 143 742 186 0 16 chr12 71354925 71355054 -72927435 - FLAM_A SINE Alu -2 131 5 373 230 67 84 chr12 71355271 71355449 -72927040 - MIR SINE MIR -30 232 58 2303 76 0 3 chr12 71355454 71355745 -72926744 - AluY SINE Alu -21 290 1 180 0 0 0 chr12 71356573 71356593 -72925896 + (A)n Simple_repeat Simple_repeat 1 20 0 636 85 11 0 chr12 71357566 71357660 -72924829 + L1MB3 LINE L1 6082 6176 -7 472 113 0 0 chr12 71357923 71357985 -72924504 + Tigger2 DNA MER2_type 1 62 -2656 2326 135 50 68 chr12 71357992 71358140 -72924349 + Tigger2 DNA MER2_type 2280 2429 -289 1521 191 4 11 chr12 71358140 71358407 -72924082 + AluJb SINE Alu 1 265 -47 197 33 33 0 chr12 71358415 71358445 -72924044 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2326 135 50 68 chr12 71358445 71358730 -72923759 + Tigger2 DNA MER2_type 2436 2714 -4 543 155 0 0 chr12 71358908 71358992 -72923497 - FLAM_A SINE Alu -26 116 33 758 251 117 75 chr12 71359119 71359589 -72922900 + MLT1J LTR MaLR 1 490 -21 220 286 13 0 chr12 71360812 71360889 -72921600 - MIR SINE MIR -1 261 184 571 265 90 5 chr12 71361097 71361297 -72921192 - MIR SINE MIR -43 219 3 191 286 0 0 chr12 71362621 71362663 -72919826 + L2 LINE L2 3222 3263 -9 310 293 60 121 chr12 71363626 71363974 -72918515 - L2 LINE L2 0 3272 2946 197 234 0 21 chr12 71364114 71364161 -72918328 - MIR SINE MIR -111 151 106 661 294 58 32 chr12 71364990 71365237 -72917252 + MIR SINE MIR 12 262 0 21 0 0 0 chr12 71366004 71366025 -72916464 + AT_rich Low_complexity Low_complexity 1 21 0 2129 141 44 6 chr12 71366327 71366688 -72915801 + THE1C LTR MaLR 1 375 0 1466 148 34 4 chr12 71366993 71367256 -72915233 - L1MC1 LINE L1 -1 6332 6062 2292 66 40 20 chr12 71367276 71367579 -72914910 - AluY SINE Alu -2 309 1 233 324 144 9 chr12 71367768 71367879 -72914610 + L2 LINE L2 3147 3272 0 830 281 85 63 chr12 71367912 71368407 -72914082 + Charlie8 DNA MER1_type 1 506 -1911 238 209 0 0 chr12 71368440 71368483 -72914006 + Charlie8 DNA MER1_type 2372 2414 -3 986 73 0 0 chr12 71370159 71370283 -72912206 + AluY SINE Alu 180 303 -8 1541 190 73 0 chr12 71370307 71370421 -72912068 + AluJo SINE Alu 1 105 -207 263 27 0 27 chr12 71370421 71370458 -72912031 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 1541 190 73 0 chr12 71370458 71370632 -72911857 + AluJo SINE Alu 105 310 -2 1217 274 108 21 chr12 71370675 71371109 -72911380 + L2 LINE L2 2842 3313 0 259 212 24 0 chr12 71372564 71372649 -72909840 + (TA)n Simple_repeat Simple_repeat 1 87 0 879 193 116 0 chr12 71373676 71373857 -72908632 + MER105 DNA DNA 2 203 -1 485 254 8 0 chr12 71375671 71375789 -72906700 + MER103 DNA DNA 2 120 -46 1394 215 34 13 chr12 71376701 71376999 -72905490 - AluJb SINE Alu -8 304 1 2207 239 93 8 chr12 71377005 71377648 -72904841 - L1ME3A LINE L1 -5 6165 5468 23 54 0 0 chr12 71377861 71377898 -72904591 + AT_rich Low_complexity Low_complexity 1 37 0 27 87 0 0 chr12 71378154 71378223 -72904266 + AT_rich Low_complexity Low_complexity 1 69 0 780 301 150 25 chr12 71378281 71378922 -72903567 - HAL1 LINE L1 -630 1877 1157 310 284 9 95 chr12 71378930 71379141 -72903348 - HAL1 LINE L1 -1398 1109 917 1134 154 42 133 chr12 71380328 71380660 -72901829 + AluJb SINE Alu 1 302 0 1780 105 101 4 chr12 71380822 71381107 -72901382 + AluSx SINE Alu 1 310 0 314 376 68 25 chr12 71381113 71381275 -72901214 - L2 LINE L2 -2 3270 3102 1662 187 99 0 chr12 71381330 71381693 -72900796 + MER63B DNA MER1_type 1 399 -37 522 261 83 61 chr12 71382327 71382591 -72899898 - MLT1K LTR MaLR -8 580 311 641 257 11 11 chr12 71382685 71382860 -72899629 + MER5B DNA MER1_type 4 178 0 298 329 101 24 chr12 71383060 71383388 -72899101 + L2 LINE L2 1596 1948 -1366 661 236 87 0 chr12 71384849 71385010 -72897479 + MIR SINE MIR 84 258 -4 273 182 0 0 chr12 71387883 71387927 -72894562 + L2 LINE L2 3262 3305 -8 222 270 0 32 chr12 71388245 71388308 -72894181 - L2 LINE L2 -4 3268 3208 23 0 0 0 chr12 71389681 71389704 -72892785 + AT_rich Low_complexity Low_complexity 1 23 0 185 287 74 56 chr12 71389996 71390104 -72892385 + L3 LINE CR1 1057 1166 -411 207 100 0 0 chr12 71391136 71391166 -72891323 + (A)n Simple_repeat Simple_repeat 1 30 0 265 258 52 113 chr12 71393474 71393668 -72888821 - MIR3 SINE MIR -12 196 15 686 239 112 10 chr12 71395491 71395688 -72886801 + MIR SINE MIR 3 219 -43 2103 114 0 0 chr12 71396127 71396407 -72886082 + AluSx SINE Alu 1 280 -32 303 140 0 0 chr12 71396407 71396457 -72886032 + (CGAAA)n Simple_repeat Simple_repeat 2 51 0 501 244 81 86 chr12 71397307 71397541 -72884948 + L2 LINE L2 3081 3313 0 1716 154 11 21 chr12 71398341 71398668 -72883821 + AluJb SINE Alu 1 324 0 187 347 13 0 chr12 71399048 71399123 -72883366 - L2 LINE L2 -23 3249 3174 1492 285 77 26 chr12 71399243 71399790 -72882699 + MLT1K LTR MaLR 13 587 -1 290 279 101 0 chr12 71399791 71399870 -72882619 + MIR3 SINE MIR 109 195 -13 564 131 30 0 chr12 71400059 71400158 -72882331 - L1M2 LINE L1 -712 5588 5487 461 263 190 19 chr12 71401858 71402063 -72880426 + MIR SINE MIR 2 241 -21 304 260 70 10 chr12 71402076 71402176 -72880313 + MIR SINE MIR 157 262 0 930 297 28 16 chr12 71402300 71402620 -72879869 + MER102b DNA MER1_type 10 333 -8 651 222 11 60 chr12 71403119 71403304 -72879185 - MER91B DNA MER1_type 0 190 15 379 176 20 49 chr12 71403418 71403520 -72878969 - L1MD3 LINE L1 0 7995 7897 266 240 164 10 chr12 71403653 71403757 -72878732 + MIR SINE MIR 117 236 -26 2250 79 17 0 chr12 71405665 71405791 -72876698 + AluY SINE Alu 1 123 -188 185 0 40 0 chr12 71405791 71405816 -72876673 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2250 79 17 0 chr12 71405816 71405979 -72876510 + AluY SINE Alu 123 295 -16 283 148 0 56 chr12 71406201 71406255 -72876234 + L2 LINE L2 3262 3312 -1 233 336 86 23 chr12 71408277 71408405 -72874084 - L2 LINE L2 -51 3221 3086 1225 130 6 0 chr12 71408465 71408642 -72873847 + THE1C LTR MaLR 1 178 -197 294 258 170 57 chr12 71408746 71408905 -72873584 + THE1A LTR MaLR 199 355 0 327 330 60 54 chr12 71409417 71409664 -72872825 - L2 LINE L2 -338 2976 2723 964 184 0 17 chr12 71409664 71409838 -72872651 - FAM SINE Alu 0 175 5 327 330 60 54 chr12 71409838 71410056 -72872433 - L2 LINE L2 -591 2723 2508 431 291 98 44 chr12 71410145 71410348 -72872141 - MIR SINE MIR -25 237 24 189 235 0 0 chr12 71410970 71411004 -72871485 + L2 LINE L2 3270 3303 -10 261 358 89 24 chr12 71412500 71412950 -72869539 - L2 LINE L2 -456 2858 2380 438 173 7 40 chr12 71413083 71413184 -72869305 + L1MB4 LINE L1 6039 6146 -34 21 57 0 0 chr12 71413523 71413558 -72868931 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr12 71413597 71413632 -72868857 + AT_rich Low_complexity Low_complexity 1 35 0 234 282 24 47 chr12 71413654 71413824 -72868665 + L1MC/D LINE L1 5293 5458 -2350 6520 114 48 5 chr12 71414537 71416240 -72866249 + L1PA8A LINE L1 4392 6131 0 215 40 0 0 chr12 71416733 71416758 -72865731 + (A)n Simple_repeat Simple_repeat 1 25 0 23 68 0 0 chr12 71417856 71417900 -72864589 + AT_rich Low_complexity Low_complexity 1 44 0 863 111 0 8 chr12 71417908 71418034 -72864455 - L1PA8 LINE L1 -6 6166 6042 230 276 179 24 chr12 71418496 71418619 -72863870 + L3 LINE CR1 646 787 -790 583 219 125 77 chr12 71418627 71418938 -72863551 + MER46C DNA MER2_type 10 335 -3 1563 195 56 0 chr12 71419119 71419422 -72863067 - L1MC3 LINE L1 -351 7434 7115 25 75 0 0 chr12 71420576 71420629 -72861860 + AT_rich Low_complexity Low_complexity 1 53 0 334 309 139 24 chr12 71421890 71422055 -72860434 + MIR SINE MIR 49 232 -30 233 285 138 8 chr12 71422052 71422175 -72860314 + L2 LINE L2 3114 3211 -61 * 290 284 98 0 chr12 71422535 71422637 -72859852 - L2 LINE L2 -10 3303 3192 245 357 1 1 chr12 71422659 71422774 -72859715 + MER5A DNA MER1_type 15 131 -49 419 376 59 41 chr12 71422786 71423124 -72859365 + L2 LINE L2 2921 3264 -8 512 110 0 65 chr12 71424045 71424200 -72858289 + (TCCA)n Simple_repeat Simple_repeat 1 145 0 288 0 0 0 chr12 71424682 71424714 -72857775 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 450 0 0 0 chr12 71424713 71424763 -72857726 + (GA)n Simple_repeat Simple_repeat 1 50 0 272 322 91 0 chr12 71424763 71424884 -72857605 + L2 LINE L2 3178 3309 -4 587 154 11 0 chr12 71428260 71428351 -72854138 - AluSg/x SINE Alu -135 177 86 205 171 0 0 chr12 71429449 71429484 -72853005 + (CAT)n Simple_repeat Simple_repeat 2 36 0 2808 122 71 76 chr12 71429567 71429956 -72852533 - L1MA9 LINE L1 0 6312 5923 233 0 62 0 chr12 71429956 71429988 -72852501 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1723 189 0 3 chr12 71429988 71430273 -72852216 - AluJb SINE Alu -28 284 1 2808 122 71 76 chr12 71430273 71430425 -72852064 - L1MA9 LINE L1 -388 5924 5771 254 29 29 0 chr12 71430425 71430460 -72852029 + (CA)n Simple_repeat Simple_repeat 2 37 0 2808 122 71 76 chr12 71430460 71430547 -72851942 - L1MA9 LINE L1 -541 5771 5685 2101 120 0 17 chr12 71431354 71431645 -72850844 - AluSg SINE Alu -14 296 11 378 338 0 28 chr12 71431814 71431956 -72850533 - L2 LINE L2 -3 3310 3173 208 349 53 58 chr12 71432136 71432284 -72850205 - L2 LINE L2 -376 2938 2791 2385 85 0 7 chr12 71432284 71432589 -72849900 - AluY SINE Alu -4 307 5 208 349 53 58 chr12 71432589 71432835 -72849654 - L2 LINE L2 -523 2791 2546 362 258 129 13 chr12 71433254 71433409 -72849080 - MIR SINE MIR -1 261 89 1215 78 11 22 chr12 71433650 71433829 -72848660 + L1PA10 LINE L1 5992 6168 0 182 366 28 0 chr12 71434582 71434653 -72847836 + MIR SINE MIR 44 116 -92 458 330 38 0 chr12 71434745 71434954 -72847535 - MIR SINE MIR -10 252 36 1172 164 76 22 chr12 71435581 71435899 -72846590 - MER33 DNA MER1_type 0 324 1 238 235 165 35 chr12 71437196 71437281 -72845208 + L2 LINE L2 3168 3263 -9 339 333 68 0 chr12 71439489 71439606 -72842883 - L2 LINE L2 -2 3311 3187 492 258 155 0 chr12 71440408 71440563 -72841926 + MER5A DNA MER1_type 9 187 -2 251 260 0 83 chr12 71441747 71441843 -72840646 + MIR SINE MIR 93 180 -82 23 0 0 0 chr12 71441873 71441896 -72840593 + AT_rich Low_complexity Low_complexity 1 23 0 211 295 0 32 chr12 71442006 71442101 -72840388 + (TATATG)n Simple_repeat Simple_repeat 3 94 0 2140 118 7 0 chr12 71442101 71442390 -72840099 - AluSx SINE Alu -21 291 1 478 228 39 31 chr12 71442416 71442543 -72839946 + MIR SINE MIR 46 173 -89 209 225 0 0 chr12 71443070 71443110 -72839379 + L2 LINE L2 3274 3313 0 310 193 12 36 chr12 71443122 71443205 -72839284 + MLT1J LTR MaLR 1 81 -430 195 385 98 16 chr12 71443239 71443361 -72839128 + L2 LINE L2 3180 3311 -2 393 239 239 0 chr12 71443812 71443979 -72838510 + MLT1J LTR MaLR 236 442 -69 25 31 0 0 chr12 71445125 71445157 -72837332 + AT_rich Low_complexity Low_complexity 1 32 0 194 147 0 0 chr12 71445624 71445658 -72836831 + L2 LINE L2 3018 3051 -221 433 302 14 7 chr12 71447278 71447417 -72835072 + MLT1J1 LTR MaLR 16 155 -291 433 258 19 75 chr12 71447442 71447655 -72834834 + MLT1J2 LTR MaLR 248 448 -2 269 289 200 0 chr12 71447800 71447890 -72834599 + L2 LINE L2 3156 3263 -9 1499 156 26 0 chr12 71450104 71450374 -72832115 - L1MB2 LINE L1 -7 6164 5888 427 256 51 87 chr12 71450759 71450954 -72831535 - MIR SINE MIR -60 202 15 5354 110 31 23 chr12 71451025 71451937 -72830552 - L1MA3 LINE L1 0 6305 5387 2661 101 0 3 chr12 71452189 71452545 -72829944 - THE1A LTR MaLR 0 355 1 11406 92 14 9 chr12 71452545 71453931 -72828558 - THE1A-int LTR MaLR 0 1580 185 2319 95 0 0 chr12 71453931 71454225 -72828264 - AluY SINE Alu -16 295 2 11406 92 14 9 chr12 71454225 71454409 -72828080 - THE1A-int LTR MaLR -1395 185 3 2478 110 8 11 chr12 71454410 71454766 -72827723 - THE1A LTR MaLR 0 355 1 215 295 161 9 chr12 71455675 71455787 -72826702 + L2 LINE L2 3139 3267 -5 995 229 9 14 chr12 71455947 71456165 -72826324 + MIR SINE MIR 20 236 -26 313 298 57 14 chr12 71456695 71456836 -72825653 - L2 LINE L2 -4 3268 3122 40 21 0 0 chr12 71457153 71457200 -72825289 + AT_rich Low_complexity Low_complexity 1 47 0 626 270 7 0 chr12 71458952 71459100 -72823389 - MIR SINE MIR 0 262 114 280 356 102 0 chr12 71459278 71459396 -72823093 - L3 LINE CR1 -2 1575 1446 304 255 82 10 chr12 71460546 71460644 -72821845 + L2 LINE L2 3133 3237 -35 633 232 66 7 chr12 71462891 71463042 -72819447 + MER5B DNA MER1_type 19 178 0 689 178 124 6 chr12 71463079 71463248 -72819241 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr12 71463291 71463312 -72819177 + AT_rich Low_complexity Low_complexity 1 21 0 303 257 250 14 chr12 71463321 71463469 -72819020 + MER5A DNA MER1_type 7 189 0 878 226 56 5 chr12 71464058 71464253 -72818236 + MIR SINE MIR 58 262 0 23 0 0 0 chr12 71464781 71464804 -72817685 + AT_rich Low_complexity Low_complexity 1 23 0 2295 102 7 3 chr12 71464881 71465186 -72817303 + AluSg SINE Alu 1 306 -4 709 291 43 4 chr12 71466072 71466302 -72816187 - MIR SINE MIR -3 259 21 1489 32 0 0 chr12 71467298 71467483 -72815006 - L1P3 LINE L1 -395 5759 5575 2429 63 0 0 chr12 71467484 71467787 -72814702 + L1PA7 LINE L1 5852 6154 0 536 309 81 48 chr12 71468400 71468772 -72813717 + L3 LINE CR1 632 1015 -562 44 20 0 0 chr12 71469731 71469782 -72812707 + AT_rich Low_complexity Low_complexity 1 51 0 385 191 112 0 chr12 71469904 71469993 -72812496 + MER103 DNA DNA 3 101 -65 392 313 84 27 chr12 71470831 71471128 -72811361 + L1MC/D LINE L1 5452 5765 -2043 1299 275 63 49 chr12 71471165 71471749 -72810740 + L2 LINE L2 2730 3312 -1 180 273 0 0 chr12 71471750 71471816 -72810673 + (CATA)n Simple_repeat Simple_repeat 1 66 0 1022 197 48 45 chr12 71471999 71472308 -72810181 + MER33 DNA MER1_type 9 318 -6 321 236 85 19 chr12 71472429 71472535 -72809954 + MIR SINE MIR 100 212 -50 484 323 189 23 chr12 71473708 71474095 -72808394 - L2 LINE L2 0 3313 2863 1410 248 66 35 chr12 71474651 71475148 -72807341 + MLT1G1 LTR MaLR 13 533 -16 508 188 23 15 chr12 71475533 71475666 -72806823 - L1MB7 LINE L1 -10 6174 6041 625 178 25 17 chr12 71475892 71476010 -72806479 + L1ME3A LINE L1 5543 5661 -509 1248 163 12 31 chr12 71476025 71476282 -72806207 + L1ME3A LINE L1 5911 6162 -8 573 325 13 0 chr12 71476628 71476785 -72805704 - MIR3 SINE MIR -13 195 37 423 254 103 45 chr12 71476826 71477050 -72805439 - MIR SINE MIR -24 238 2 1818 152 28 10 chr12 71477112 71477401 -72805088 - AluSx SINE Alu -18 294 1 257 243 180 36 chr12 71478280 71478391 -72804098 - MER117 DNA MER1_type 0 197 71 601 259 83 26 chr12 71478396 71478624 -72803865 - MIR SINE MIR -17 245 5 453 304 127 37 chr12 71478770 71479069 -72803420 - L3 LINE CR1 -240 1337 1012 1721 179 10 0 chr12 71479244 71479373 -72803116 + AluJb SINE Alu 1 127 -185 429 70 0 0 chr12 71479373 71479430 -72803059 + (CATA)n Simple_repeat Simple_repeat 4 60 0 1721 179 10 0 chr12 71479430 71479590 -72802899 + AluJb SINE Alu 127 293 -19 207 184 0 0 chr12 71479762 71479800 -72802689 + A-rich Low_complexity Low_complexity 3 40 0 1969 152 0 3 chr12 71479867 71480169 -72802320 + AluJo SINE Alu 1 301 -11 1956 153 13 65 chr12 71481504 71481889 -72800600 + MLT1A1 LTR MaLR 1 365 0 431 268 91 30 chr12 71481967 71482165 -72800324 + MLT1K LTR MaLR 18 227 -361 22 35 0 0 chr12 71482294 71482323 -72800166 + AT_rich Low_complexity Low_complexity 1 29 0 1507 237 64 66 chr12 71482526 71483024 -72799465 + MLT1F1 LTR MaLR 69 565 -2 402 258 22 0 chr12 71483406 71483495 -72798994 + MIR SINE MIR 72 162 -100 34 0 0 0 chr12 71483560 71483594 -72798895 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr12 71484541 71484569 -72797920 + AT_rich Low_complexity Low_complexity 1 28 0 357 329 49 58 chr12 71485315 71485659 -72796830 - L2 LINE L2 -1911 1403 1063 1470 133 81 0 chr12 71485753 71486001 -72796488 - L1PB3 LINE L1 -5 6149 5882 815 169 0 88 chr12 71486334 71486494 -72795995 - AluJ SINE Alu -59 253 108 711 135 45 0 chr12 71486494 71486605 -72795884 + AluJb SINE Alu 8 123 -189 254 175 0 0 chr12 71486625 71486665 -72795824 - AluJ SINE Alu -176 126 87 406 270 95 0 chr12 71487885 71488022 -72794467 + MIR SINE MIR 79 228 -34 181 244 24 0 chr12 71488392 71488433 -72794056 - L2 LINE L2 -37 3235 3194 180 326 0 0 chr12 71488668 71488711 -72793778 + MIR SINE MIR 81 123 -85 189 291 55 0 chr12 71488757 71488812 -72793677 + MIR3 SINE MIR 135 192 -16 302 350 66 47 chr12 71490527 71490801 -72791688 + L2 LINE L2 2993 3271 -1 27 29 0 0 chr12 71490876 71490910 -72791579 + AT_rich Low_complexity Low_complexity 1 34 0 230 265 15 29 chr12 71491515 71491583 -72790906 - MIR SINE MIR -117 145 79 392 390 0 0 chr12 71492556 71492710 -72789779 + L3 LINE CR1 1417 1570 -7 283 372 44 22 chr12 71493059 71493239 -72789250 + MIR3 SINE MIR 20 203 -5 206 372 93 0 chr12 71495199 71495285 -72787204 - MIR3 SINE MIR -25 183 90 229 268 0 14 chr12 71498496 71498567 -72783922 + A-rich Low_complexity Low_complexity 2 71 0 219 69 0 0 chr12 71500021 71500050 -72782439 + (T)n Simple_repeat Simple_repeat 1 29 0 252 288 66 22 chr12 71500193 71500344 -72782145 - MIR SINE MIR -68 140 30 2459 148 25 39 chr12 71501249 71501449 -72781040 + MSTA LTR MaLR 1 202 -226 2125 75 0 4 chr12 71501449 71501717 -72780772 + AluY SINE Alu 1 267 -44 2459 148 25 39 chr12 71501717 71501950 -72780539 + MSTA LTR MaLR 202 428 0 1760 121 81 0 chr12 71502350 71502531 -72779958 - AluSg SINE Alu -7 303 91 216 0 0 0 chr12 71502531 71502555 -72779934 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1760 121 81 0 chr12 71502555 71502645 -72779844 - AluSg SINE Alu -219 91 10 830 230 97 27 chr12 71502651 71502908 -72779581 + MER102a DNA MER1_type 38 312 -18 289 216 82 21 chr12 71503607 71503704 -72778785 - MER20B DNA MER1_type -17 766 664 1741 157 24 10 chr12 71503718 71504011 -72778478 - AluJb SINE Alu -15 297 1 21 57 0 0 chr12 71504035 71504070 -72778419 + AT_rich Low_complexity Low_complexity 1 35 0 498 290 37 74 chr12 71504226 71504331 -72778158 - MER20B DNA MER1_type -465 318 211 2222 99 3 0 chr12 71504331 71504625 -72777864 + AluSq SINE Alu 1 295 -18 498 290 37 74 chr12 71504625 71504788 -72777701 - MER20B DNA MER1_type -572 211 60 223 203 27 0 chr12 71505648 71505722 -72776767 + CT-rich Low_complexity Low_complexity 1 76 0 2058 127 0 3 chr12 71506183 71506490 -72775999 - AluSx SINE Alu 0 306 1 538 305 165 39 chr12 71506965 71507089 -72775400 - L2 LINE L2 0 3313 3206 2398 156 31 7 chr12 71507089 71507505 -72774984 - MSTB LTR MaLR 0 426 1 538 305 165 39 chr12 71507505 71507994 -72774495 - L2 LINE L2 -107 3206 2639 298 303 9 37 chr12 71507999 71508108 -72774381 - L2 LINE L2 -838 2476 2371 205 190 25 25 chr12 71508128 71508207 -72774282 + (TA)n Simple_repeat Simple_repeat 2 80 0 642 159 125 34 chr12 71508230 71508406 -72774083 + MIR SINE MIR 68 259 -3 412 254 17 66 chr12 71508573 71508747 -72773742 - L2 LINE L2 -1 3312 3146 1667 141 53 53 chr12 71508747 71509122 -72773367 - THE1C LTR MaLR 0 375 1 1777 178 0 11 chr12 71509536 71509847 -72772642 + AluJb SINE Alu 3 310 0 531 82 0 0 chr12 71509876 71509949 -72772540 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 226 331 126 0 chr12 71510106 71510233 -72772256 - MLT1J LTR MaLR -267 244 102 711 254 41 12 chr12 71510387 71510631 -72771858 + AluJb SINE Alu 35 285 -27 423 125 0 0 chr12 71510686 71510758 -72771731 + (TTTC)n Simple_repeat Simple_repeat 4 75 0 232 320 213 10 chr12 71510916 71511113 -72771376 - MLT1J LTR MaLR -267 244 8 220 344 55 47 chr12 71511164 71511292 -72771197 + L2 LINE L2 3137 3265 -7 212 274 83 0 chr12 71511288 71511372 -72771117 - MIR SINE MIR -42 220 130 * 298 320 0 10 chr12 71511913 71512016 -72770473 + MER103 DNA DNA 18 119 -47 378 0 0 0 chr12 71512066 71512108 -72770381 + (CA)n Simple_repeat Simple_repeat 1 42 0 4958 181 93 35 chr12 71512154 71512277 -72770212 - Charlie1 DNA MER1_type -17 2744 2630 2123 124 3 13 chr12 71512277 71512576 -72769913 - AluSq SINE Alu -17 296 1 4958 181 93 35 chr12 71512576 71513671 -72768818 - Charlie1 DNA MER1_type -131 2630 1455 281 171 0 0 chr12 71513689 71513730 -72768759 - Charlie1 DNA MER1_type -2720 41 1 288 235 0 44 chr12 71514343 71514411 -72768078 - L2 LINE L2 -10 3303 3239 2280 204 34 5 chr12 71514543 71514990 -72767499 + L1MCa LINE L1 18 477 -5949 819 78 0 0 chr12 71514992 71515094 -72767395 + AluY SINE Alu 1 102 -209 5637 154 11 9 chr12 71515094 71516053 -72766436 + L1MC1 LINE L1 5371 6331 -2 342 67 0 0 chr12 71516864 71516909 -72765580 + (TG)n Simple_repeat Simple_repeat 2 46 0 4134 133 41 3 chr12 71517191 71517854 -72764635 + L1PA16 LINE L1 5470 6157 -9 524 260 58 0 chr12 71517922 71518076 -72764413 + MIR3 SINE MIR 45 207 -1 183 308 51 64 chr12 71518232 71518310 -72764179 + L2 LINE L2 3200 3276 -37 211 310 46 0 chr12 71519392 71519479 -72763010 - L3 LINE CR1 -56 1521 1431 559 237 123 11 chr12 71520366 71520554 -72761935 + MIR SINE MIR 50 259 -3 4849 57 13 2 chr12 71520702 71521329 -72761160 + L1PA7 LINE L1 5521 6154 0 1032 227 76 29 chr12 71521921 71522226 -72760263 - MLT1E LTR MaLR 0 593 304 225 0 0 0 chr12 71522226 71522251 -72760238 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 261 0 0 0 chr12 71522250 71522279 -72760210 + (GA)n Simple_repeat Simple_repeat 1 29 0 1032 227 76 29 chr12 71522251 71522511 -72759978 - MLT1E LTR MaLR -289 304 1 1233 221 63 100 chr12 71523857 71524378 -72758111 + MLT1D LTR MaLR 4 505 0 305 197 120 65 chr12 71524560 71524710 -72757779 - MIR SINE MIR -50 212 58 424 256 154 0 chr12 71524728 71524884 -72757605 - MIR SINE MIR -81 181 2 251 357 27 18 chr12 71524942 71525054 -72757435 - MIR SINE MIR -4 258 146 2032 186 39 48 chr12 71525085 71525548 -72756941 + MLT1D LTR MaLR 45 503 -2 730 174 23 8 chr12 71525550 71525682 -72756807 - MIR SINE MIR -109 153 20 1893 149 0 31 chr12 71525692 71526014 -72756475 - AluJo SINE Alu 0 312 1 376 279 36 9 chr12 71526410 71526521 -72755968 - MIR SINE MIR -79 183 70 498 273 133 0 chr12 71526610 71526775 -72755714 + MIR SINE MIR 51 237 -25 2071 119 0 26 chr12 71528748 71529059 -72753430 + AluSx SINE Alu 1 303 -9 378 250 156 8 chr12 71529068 71529196 -72753293 - MIR SINE MIR -65 197 51 677 143 8 56 chr12 71529671 71529797 -72752692 + FRAM SINE Alu 37 156 -20 3817 164 45 78 chr12 71529819 71530912 -72751577 + L1MC1 LINE L1 5124 6328 -5 367 343 94 42 chr12 71532017 71532672 -72749817 - L2 LINE L2 0 3272 2544 2067 92 31 14 chr12 71532772 71533064 -72749425 + AluSx SINE Alu 1 297 -15 278 276 31 31 chr12 71534638 71534736 -72747753 - L2 LINE L2 -5 3308 3211 22 0 0 0 chr12 71535058 71535080 -72747409 + AT_rich Low_complexity Low_complexity 1 22 0 726 231 16 0 chr12 71535798 71535980 -72746509 - MER53 DNA DNA 0 189 5 22 80 0 0 chr12 71537127 71537177 -72745312 + AT_rich Low_complexity Low_complexity 1 50 0 368 196 341 17 chr12 71537255 71537428 -72745061 + MIR SINE MIR 32 260 -2 2799 240 47 34 chr12 71538046 71539068 -72743421 + L1M4 LINE L1 4369 5403 -743 1180 113 44 0 chr12 71539076 71539280 -72743209 + L1MB2 LINE L1 5258 5470 -710 183 42 0 0 chr12 71539284 71539308 -72743181 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3579 159 24 15 chr12 71539412 71540079 -72742410 + L1MB2 LINE L1 5497 6169 -2 2123 127 0 10 chr12 71540126 71540433 -72742056 + AluSx SINE Alu 3 306 -6 512 312 140 7 chr12 71541172 71541451 -72741038 + L2 LINE L2 2272 2587 -727 1775 208 12 34 chr12 71541455 71541535 -72740954 - MER74A LTR ERVL 0 558 478 727 174 7 0 chr12 71541535 71541673 -72740816 + L1MA10 LINE L1 6187 6325 -9 1775 208 12 34 chr12 71541673 71542085 -72740404 - MER74A LTR ERVL -80 478 4 222 308 96 14 chr12 71542165 71542311 -72740178 + L2 LINE L2 2711 2868 -446 220 180 45 11 chr12 71543153 71543242 -72739247 + CT-rich Low_complexity Low_complexity 1 92 0 530 313 21 89 chr12 71543270 71543561 -72738928 - L2 LINE L2 -2 3270 3000 304 314 36 43 chr12 71543724 71543864 -72738625 + MIR3 SINE MIR 23 161 -47 854 229 0 6 chr12 71544415 71544585 -72737904 + AluJb SINE Alu 134 302 -10 284 330 45 62 chr12 71544822 71544998 -72737491 + MIR3 SINE MIR 16 188 -20 219 253 29 129 chr12 71545862 71546032 -72736457 + MIR SINE MIR 104 256 -6 289 280 144 8 chr12 71546535 71546653 -72735836 + MIR3 SINE MIR 70 203 -5 305 317 20 0 chr12 71547423 71547524 -72734965 - L1MC4 LINE L1 -1323 6719 6617 * 317 311 0 0 chr12 71547445 71547535 -72734954 + L1MC4 LINE L1 6614 6703 -1339 29 47 0 0 chr12 71547600 71547643 -72734846 + AT_rich Low_complexity Low_complexity 1 43 0 217 282 191 18 chr12 71549009 71549119 -72733370 - L2 LINE L2 -19 3294 3166 416 260 201 0 chr12 71549456 71549610 -72732879 - MIR SINE MIR -6 256 72 225 0 0 0 chr12 71549991 71550016 -72732473 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 261 333 14 68 chr12 71550339 71550486 -72732003 - MIR3 SINE MIR -54 154 16 318 297 23 8 chr12 71550798 71550926 -72731563 - MER103 DNA DNA -14 152 23 23 0 0 0 chr12 71550926 71550949 -72731540 + AT_rich Low_complexity Low_complexity 1 23 0 7259 20 38 0 chr12 71551042 71552309 -72730180 + L1PA4 LINE L1 4855 6154 -1 24 0 0 0 chr12 71552326 71552350 -72730139 + AT_rich Low_complexity Low_complexity 1 24 0 268 378 67 31 chr12 71552584 71552838 -72729651 - L2 LINE L2 -25 3247 2985 21 0 0 0 chr12 71553233 71553254 -72729235 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 71554217 71554238 -72728251 + (A)n Simple_repeat Simple_repeat 1 21 0 199 268 0 0 chr12 71555231 71555272 -72727217 + MIR SINE MIR 149 189 -73 304 300 207 0 chr12 71555626 71555776 -72726713 - MER5A DNA MER1_type 0 189 9 21 36 0 0 chr12 71556659 71556687 -72725802 + AT_rich Low_complexity Low_complexity 1 28 0 1096 279 65 63 chr12 71558151 71558690 -72723799 - L2 LINE L2 0 3313 2767 206 286 78 0 chr12 71558764 71558841 -72723648 - MER5C DNA MER1_type -241 83 1 251 308 0 0 chr12 71558841 71558919 -72723570 - L2 LINE L2 -508 2806 2729 1667 174 35 11 chr12 71559362 71559649 -72722840 + AluJo SINE Alu 1 294 -18 399 132 0 0 chr12 71560511 71560579 -72721910 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 1449 206 4 18 chr12 71561100 71561372 -72721117 + AluJo SINE Alu 1 268 -44 239 160 60 0 chr12 71561381 71561431 -72721058 + L1MA8 LINE L1 6062 6114 -177 1515 106 20 8 chr12 71561437 71561682 -72720807 + L1MA1 LINE L1 6055 6302 0 792 149 51 26 chr12 71561682 71561872 -72720617 + L1MA8 LINE L1 6091 6290 -1 2218 114 0 0 chr12 71561900 71562198 -72720291 - AluSx SINE Alu -10 302 5 24 32 0 0 chr12 71562524 71562555 -72719934 + AT_rich Low_complexity Low_complexity 1 31 0 364 328 83 10 chr12 71563299 71563491 -72718998 - MIR SINE MIR -50 212 7 298 337 88 28 chr12 71563964 71564145 -72718344 + L2 LINE L2 3080 3271 -1 1090 168 43 5 chr12 71564841 71565049 -72717440 - MER20 DNA MER1_type 0 219 4 339 290 109 44 chr12 71565837 71566020 -72716469 + MIR SINE MIR 1 195 -67 718 242 155 0 chr12 71566308 71566502 -72715987 + MIR SINE MIR 32 255 -7 696 302 85 63 chr12 71566937 71567444 -72715045 + LTR67 LTR ERVL 28 545 -12 1752 228 104 98 chr12 71567709 71568298 -72714191 - MLT1G LTR MaLR -3 587 1 2507 113 29 16 chr12 71569353 71569735 -72712754 - MSTA LTR MaLR 0 428 42 301 297 126 45 chr12 71569911 71570022 -72712467 + L2 LINE L2 3188 3307 -6 21 71 0 0 chr12 71571096 71571138 -72711351 + AT_rich Low_complexity Low_complexity 1 42 0 492 279 111 11 chr12 71571240 71571430 -72711059 - MIR SINE MIR -43 219 11 1659 262 62 52 chr12 71571607 71572344 -72710145 + MER20B DNA MER1_type 11 755 -28 25 51 0 0 chr12 71572713 71572752 -72709737 + AT_rich Low_complexity Low_complexity 1 39 0 227 356 52 69 chr12 71573025 71573472 -72709017 - L2 LINE L2 -8 3264 2826 837 277 78 24 chr12 71573520 71573816 -72708673 - L2 LINE L2 -3 3310 2999 458 304 40 52 chr12 71574213 71574463 -72708026 - MIR SINE MIR -3 259 13 202 193 53 35 chr12 71574986 71575043 -72707446 - MIR SINE MIR -140 122 65 26 0 0 0 chr12 71575472 71575498 -72706991 + AT_rich Low_complexity Low_complexity 1 26 0 485 239 204 18 chr12 71577315 71577516 -72704973 + MIR SINE MIR 1 237 -25 183 355 13 0 chr12 71577695 71577771 -72704718 - MIR SINE MIR -70 192 116 285 374 81 0 chr12 71578207 71578330 -72704159 + L2 LINE L2 3140 3272 0 450 268 32 0 chr12 71578559 71578682 -72703807 - MER94 DNA DNA 0 134 8 697 273 112 0 chr12 71578697 71578884 -72703605 + MIR SINE MIR 54 261 -1 2049 121 7 10 chr12 71580894 71581192 -72701297 + AluSx SINE Alu 5 301 -11 228 242 114 16 chr12 71581777 71581921 -72700568 - MIR SINE MIR -55 153 1 24 32 0 0 chr12 71582221 71582252 -72700237 + AT_rich Low_complexity Low_complexity 1 31 0 590 215 40 13 chr12 71582261 71582410 -72700079 + MIR SINE MIR 109 261 -1 325 257 11 164 chr12 71582818 71582951 -72699538 - MER5B DNA MER1_type 0 189 37 1730 172 7 18 chr12 71582951 71583270 -72699219 - AluJb SINE Alu 0 316 1 2051 134 0 10 chr12 71583280 71583572 -72698917 - AluSx SINE Alu -23 289 1 325 257 11 164 chr12 71583572 71583634 -72698855 - MER5B DNA MER1_type -162 27 3 183 43 43 65 chr12 71583749 71583795 -72698694 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 206 351 52 0 chr12 71583918 71583995 -72698494 - MIR SINE MIR -133 129 49 2222 101 0 7 chr12 71584087 71584385 -72698104 + AluSq SINE Alu 1 296 -17 308 278 203 28 chr12 71584719 71584831 -72697658 - MIR SINE MIR 0 262 171 1836 166 19 7 chr12 71584831 71585139 -72697350 - AluJb SINE Alu 0 312 1 308 278 203 28 chr12 71585139 71585238 -72697251 - MIR SINE MIR -91 171 14 184 303 64 46 chr12 71586303 71586412 -72696077 - L2 LINE L2 -2780 534 424 579 196 23 23 chr12 71587150 71587283 -72695206 + L2 LINE L2 2565 2697 -617 2106 217 45 88 chr12 71587283 71587594 -72694895 - L1MD2 LINE L1 -1 6358 6035 1474 197 13 26 chr12 71587594 71587903 -72694586 + AluJo SINE Alu 5 309 -3 2106 217 45 88 chr12 71587903 71588158 -72694331 - L1MD2 LINE L1 -324 6035 5837 1713 159 41 3 chr12 71588158 71588448 -72694041 - AluJb SINE Alu -11 301 1 2106 217 45 88 chr12 71588448 71588708 -72693781 - L1MD2 LINE L1 -522 5837 5567 1012 255 15 12 chr12 71588708 71589028 -72693461 + L2 LINE L2 2695 3015 -298 314 369 7 7 chr12 71589095 71589236 -72693253 - L1MCb LINE L1 -5673 372 232 2646 99 8 3 chr12 71590061 71590423 -72692066 + THE1B LTR MaLR 1 364 0 756 339 0 16 chr12 71591880 71592134 -72690355 + MIR SINE MIR 2 251 -11 2557 172 91 54 chr12 71592812 71593537 -72688952 - L1MC3 LINE L1 0 7785 7034 353 161 0 0 chr12 71593538 71593600 -72688889 - L1MC3 LINE L1 -2248 5794 5733 262 234 32 0 chr12 71593604 71593698 -72688791 - L1M4 LINE L1 -3106 3040 2944 1146 120 130 9 chr12 71593701 71593917 -72688572 - L1MA6 LINE L1 0 6300 6059 30 27 0 0 chr12 71594034 71594071 -72688418 + AT_rich Low_complexity Low_complexity 1 37 0 672 154 0 0 chr12 71594078 71594182 -72688307 - FLAM_A SINE Alu -19 123 20 1394 214 24 0 chr12 71594184 71594520 -72687969 - L1M4 LINE L1 -3212 2934 2591 261 0 0 0 chr12 71594746 71594775 -72687714 + (A)n Simple_repeat Simple_repeat 1 29 0 1424 177 97 13 chr12 71595164 71595536 -72686953 + MLT1C LTR MaLR 65 467 0 636 274 110 41 chr12 71595785 71595851 -72686638 - MIR SINE MIR 0 262 202 2310 103 0 0 chr12 71595851 71596142 -72686347 + AluSc SINE Alu 1 291 -18 636 274 110 41 chr12 71596142 71596320 -72686169 - MIR SINE MIR -60 202 1 219 322 161 17 chr12 71597606 71597724 -72684765 - MIR3 SINE MIR -51 157 23 1412 298 46 25 chr12 71597833 71598400 -72684089 + MLT1E LTR MaLR 1 579 -14 432 38 0 0 chr12 71598776 71598829 -72683660 + AluY SINE Alu 245 297 -15 2262 109 3 0 chr12 71599484 71599788 -72682701 - AluSp SINE Alu -8 305 1 290 382 35 28 chr12 71600302 71600446 -72682043 + MIR3 SINE MIR 36 180 -28 243 328 0 0 chr12 71600801 71600862 -72681627 - L2 LINE L2 -2 3311 3251 366 300 18 36 chr12 71601126 71601236 -72681253 - L2 LINE L2 -9 3304 3197 252 301 52 61 chr12 71601527 71601756 -72680733 + MLT1L LTR MaLR 17 243 -372 248 189 67 33 chr12 71601934 71602024 -72680465 + MLT1L LTR MaLR 512 604 -11 467 250 16 31 chr12 71602794 71602922 -72679567 - MIR3 SINE MIR -49 159 34 528 299 96 45 chr12 71602997 71603351 -72679138 + L2 LINE L2 2871 3242 -71 4168 21 2 0 chr12 71603950 71604435 -72678054 - L1PA3 LINE L1 0 6155 5670 21 36 0 0 chr12 71605690 71605718 -72676771 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 71606437 71606461 -72676028 + AT_rich Low_complexity Low_complexity 1 24 0 2183 128 0 0 chr12 71606504 71606810 -72675679 - AluSg SINE Alu -4 306 1 547 217 13 59 chr12 71607380 71607532 -72674957 - L2 LINE L2 0 3313 3169 516 330 80 8 chr12 71607969 71608208 -72674281 + L2 LINE L2 2806 3061 -211 309 244 12 24 chr12 71609082 71609164 -72673325 + MER21B LTR ERV1 13 93 -770 989 228 54 134 chr12 71609227 71609417 -72673072 + MER21B LTR ERV1 101 305 -558 2978 107 14 2 chr12 71609417 71609846 -72672643 - MER57B LTR ERV1 0 434 1 989 228 54 134 chr12 71609846 71609994 -72672495 + MER21B LTR ERV1 305 463 -400 2044 128 0 20 chr12 71609994 71610291 -72672198 + AluJo SINE Alu 14 304 -8 989 228 54 134 chr12 71610291 71610621 -72671868 + MER21B LTR ERV1 463 716 -147 341 342 75 6 chr12 71610673 71610834 -72671655 + MIR3 SINE MIR 14 185 -23 1182 293 32 13 chr12 71610948 71611323 -72671166 + L2 LINE L2 2932 3313 0 1012 220 29 19 chr12 71611759 71611939 -72670550 + MER33 DNA MER1_type 7 194 -2391 2109 115 4 0 chr12 71611939 71612244 -72670245 + AluSc SINE Alu 1 306 0 1012 220 29 19 chr12 71612244 71612376 -72670113 + MER33 DNA MER1_type 194 323 -1 246 290 0 29 chr12 71612450 71612519 -72669970 - L2 LINE L2 -2891 423 357 2225 110 7 3 chr12 71612520 71612821 -72669668 + AluSc SINE Alu 1 302 -7 876 158 38 13 chr12 71613043 71613201 -72669288 + FRAM SINE Alu 1 157 -19 211 223 231 54 chr12 71613201 71613331 -72669158 - L2 LINE L2 -3 3310 3158 266 372 0 0 chr12 71614071 71614165 -72668324 + MIR SINE MIR 58 151 -111 27 29 0 0 chr12 71614756 71614790 -72667699 + AT_rich Low_complexity Low_complexity 1 34 0 315 235 62 0 chr12 71615041 71615122 -72667367 - MIR SINE MIR -86 122 37 347 346 173 4 chr12 71615140 71615377 -72667112 - L3 LINE CR1 -17 1560 1284 200 267 35 138 chr12 71615735 71615851 -72666638 - L2 LINE L2 0 3313 3210 536 278 75 0 chr12 71615877 71616050 -72666439 - MIR SINE MIR -8 254 69 1660 175 33 36 chr12 71616555 71616915 -72665574 + MLT1A1 LTR MaLR 5 363 -2 288 238 158 0 chr12 71618020 71618121 -72664368 + MIR3 SINE MIR 91 207 -1 2143 139 0 0 chr12 71618580 71618890 -72663599 - AluSx SINE Alu -2 310 1 846 124 0 0 chr12 71618969 71619098 -72663391 - L1PA15 LINE L1 -13 6152 6024 2010 168 76 25 chr12 71619148 71619554 -72662935 - MSTA LTR MaLR 0 428 2 503 232 213 0 chr12 71620348 71620503 -72661986 - MER5A DNA MER1_type -1 188 1 285 203 0 0 chr12 71620507 71620566 -72661923 + AluSq SINE Alu 1 59 -242 1705 119 4 27 chr12 71620594 71620855 -72661634 + AluSq SINE Alu 42 296 -17 21 57 0 0 chr12 71621970 71622005 -72660484 + AT_rich Low_complexity Low_complexity 1 35 0 205 298 53 127 chr12 71622337 71622565 -72659924 - L2 LINE L2 -97 3175 2965 2420 70 0 29 chr12 71623558 71623873 -72658616 - AluY SINE Alu -5 306 1 198 192 0 0 chr12 71624355 71624407 -72658082 + (AATAG)n Simple_repeat Simple_repeat 4 55 0 246 81 0 0 chr12 71624459 71624496 -72657993 + (TG)n Simple_repeat Simple_repeat 2 38 0 663 308 115 76 chr12 71624785 71626171 -72656318 - L2 LINE L2 0 3313 1883 192 219 0 0 chr12 71626963 71627004 -72655485 - L2 LINE L2 -4 3309 3269 390 253 39 45 chr12 71627138 71627292 -72655197 - MIR SINE MIR -2 260 108 729 251 22 130 chr12 71628460 71628830 -72653659 - L2 LINE L2 -12 3301 2972 186 272 132 18 chr12 71628865 71628979 -72653510 - MIR SINE MIR -19 243 117 * 630 259 11 1 chr12 71628976 71629130 -72653359 - MER5A DNA MER1_type -17 166 1 2284 100 3 3 chr12 71629294 71629604 -72652885 - AluSx SINE Alu -2 310 1 255 324 14 0 chr12 71629643 71629714 -72652775 + L2 LINE L2 3193 3264 -49 2010 214 99 8 chr12 71629749 71630272 -72652217 - L1MD3 LINE L1 -1 7994 7424 412 236 73 16 chr12 71630275 71630398 -72652091 - MLT1F1 LTR MaLR -437 130 1 433 153 0 0 chr12 71630399 71630471 -72652018 - L1MD3 LINE L1 -719 7276 7205 * 1219 232 72 35 chr12 71630468 71630813 -72651676 - L1MD3 LINE L1 -1152 6843 6486 1533 137 22 89 chr12 71630815 71631128 -72651361 + MLT1B LTR MaLR 7 298 -92 2769 160 119 136 chr12 71631135 71631215 -72651274 - L1MC3 LINE L1 -136 7649 7569 180 0 0 0 chr12 71631215 71631235 -72651254 + (TA)n Simple_repeat Simple_repeat 2 21 0 2769 160 119 136 chr12 71631235 71631616 -72650873 - L1MC3 LINE L1 -216 7569 7183 305 275 11 11 chr12 71631616 71631707 -72650782 - MLT1F1 LTR MaLR -442 125 35 2769 160 119 136 chr12 71631707 71631957 -72650532 - L1MC3 LINE L1 -602 7183 6863 1524 184 33 0 chr12 71631957 71632228 -72650261 - AluJo SINE Alu -31 281 2 2769 160 119 136 chr12 71632228 71632389 -72650100 - L1MC3 LINE L1 -922 6863 6701 768 287 137 11 chr12 71632382 71632902 -72649587 - L1ME4a LINE L1 -227 5894 5311 * 29 0 0 0 chr12 71633528 71633557 -72648932 + AT_rich Low_complexity Low_complexity 1 29 0 309 308 238 39 chr12 71633853 71634424 -72648065 - L2 LINE L2 -466 2848 2164 951 168 99 11 chr12 71634441 71634632 -72647857 + MER20 DNA MER1_type 11 218 -1 287 234 37 75 chr12 71635516 71635623 -72646866 + L2 LINE L2 3171 3273 -40 1752 164 13 20 chr12 71636826 71637131 -72645358 + AluJb SINE Alu 1 303 -9 475 260 107 41 chr12 71637148 71637344 -72645145 - MIR SINE MIR -2 260 52 529 311 166 27 chr12 71637475 71637999 -72644490 + L2 LINE L2 2140 2736 -578 478 228 48 74 chr12 71637990 71638179 -72644310 - L2 LINE L2 0 3313 3130 * 1880 140 24 84 chr12 71638509 71638924 -72643565 - MLT1B LTR MaLR 0 390 1 249 318 0 9 chr12 71638934 71639044 -72643445 - L1MC5 LINE L1 -125 7836 7728 656 220 28 0 chr12 71639420 71639585 -72642904 - L1MCb LINE L1 -3762 2821 2642 4267 206 62 38 chr12 71639606 71640634 -72641855 - L1MCb LINE L1 -4046 2518 1517 1556 142 30 61 chr12 71640634 71640930 -72641559 - AluJo SINE Alu -25 287 1 4267 206 62 38 chr12 71640930 71641303 -72641186 - L1MCb LINE L1 -5047 1517 1155 1751 179 3 14 chr12 71641303 71641594 -72640895 - AluJb SINE Alu -24 288 1 4267 206 62 38 chr12 71641594 71642548 -72639941 - L1MCb LINE L1 -5409 1155 4 601 305 67 71 chr12 71642693 71643172 -72639317 - L2 LINE L2 0 3313 2837 282 337 134 23 chr12 71643256 71643428 -72639061 + MIR3 SINE MIR 11 201 -7 549 284 22 49 chr12 71643430 71643613 -72638876 - L3 LINE CR1 -68 1509 1332 648 210 210 0 chr12 71643637 71643804 -72638685 + MER3 DNA MER1_type 1 202 -7 237 245 0 0 chr12 71643768 71643821 -72638668 - MER3 DNA MER1_type -119 90 38 * 290 235 53 68 chr12 71643835 71643967 -72638522 - L3 LINE CR1 -291 1286 1157 225 178 0 0 chr12 71644565 71644610 -72637879 + T-rich Low_complexity Low_complexity 1 45 0 234 380 11 0 chr12 71644797 71644889 -72637600 - L3b LINE CR1 -86 1497 1405 2227 96 3 16 chr12 71645123 71645437 -72637052 - AluSx SINE Alu -2 310 1 521 206 58 112 chr12 71645438 71645661 -72636828 + L2 LINE L2 3012 3222 -91 21 36 0 0 chr12 71645818 71645846 -72636643 + AT_rich Low_complexity Low_complexity 1 28 0 285 250 0 0 chr12 71645868 71645928 -72636561 + MIR SINE MIR 203 262 0 2419 246 74 10 chr12 71645984 71646880 -72635609 + MER69 DNA AcHobo 1 2329 -197 390 282 10 0 chr12 71646904 71647007 -72635482 - L2 LINE L2 -659 2655 2552 182 207 17 69 chr12 71647066 71647124 -72635365 + MIR SINE MIR 2 56 -206 730 197 48 32 chr12 71647135 71647323 -72635166 + MER69 DNA AcHobo 2336 2526 0 398 331 122 4 chr12 71647323 71647619 -72634870 - L1MC/D LINE L1 -660 5502 5284 1455 206 0 32 chr12 71647781 71648063 -72634426 - AluJo SINE Alu -39 273 1 279 0 0 0 chr12 71649164 71649195 -72633294 + (A)n Simple_repeat Simple_repeat 1 31 0 971 162 173 10 chr12 71650723 71650920 -72631569 - MIR SINE MIR -11 251 23 1643 239 155 19 chr12 71651085 71651607 -72630882 - MLT1G1 LTR MaLR -2 593 1 22 0 0 0 chr12 71651654 71651676 -72630813 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 71651716 71651741 -72630748 + AT_rich Low_complexity Low_complexity 1 25 0 181 259 19 0 chr12 71652238 71652292 -72630197 + L2 LINE L2 2920 2974 -298 5865 22 0 0 chr12 71652420 71653091 -72629398 + L1PA3 LINE L1 5482 6152 -3 22 0 0 0 chr12 71653091 71653113 -72629376 + AT_rich Low_complexity Low_complexity 1 22 0 275 0 29 0 chr12 71653113 71653148 -72629341 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 569 271 7 14 chr12 71653439 71653579 -72628910 + L2 LINE L2 3175 3313 0 261 313 62 10 chr12 71654202 71654298 -72628191 + MIR SINE MIR 48 148 -60 228 200 0 20 chr12 71654503 71654553 -72627936 + Alu SINE Alu 258 306 -2 1944 151 10 3 chr12 71654625 71654929 -72627560 - AluJb SINE Alu -6 306 1 321 250 71 9 chr12 71656758 71656870 -72625619 - MIR SINE MIR -10 252 134 2034 103 62 0 chr12 71656965 71657255 -72625234 + AluSp SINE Alu 1 308 -5 2129 63 4 4 chr12 71657266 71657534 -72624955 + AluY SINE Alu 23 290 -21 24 0 0 0 chr12 71658626 71658650 -72623839 + AT_rich Low_complexity Low_complexity 1 24 0 4717 228 38 23 chr12 71658799 71659083 -72623406 + L1MB8 LINE L1 2621 2899 -3247 1644 194 0 3 chr12 71659083 71659377 -72623112 + AluJb SINE Alu 1 293 -19 4717 228 38 23 chr12 71659377 71659763 -72622726 + L1MB8 LINE L1 2899 3278 -2868 2178 117 7 0 chr12 71659763 71660061 -72622428 + AluSx SINE Alu 3 302 -10 4717 228 38 23 chr12 71660061 71660800 -72621689 + L1MB8 LINE L1 3278 4052 -2094 4114 196 52 19 chr12 71660798 71662588 -72619901 + L1MB8 LINE L1 4333 6177 -1 * 597 231 0 30 chr12 71663550 71663684 -72618805 + FLAM_A SINE Alu 1 130 -3 339 268 18 53 chr12 71664001 71664121 -72618368 - MIR SINE MIR -78 130 14 337 336 33 62 chr12 71664270 71664335 -72618154 + HAL1b LINE L1 405 470 -878 862 214 45 5 chr12 71664335 71664536 -72617953 - MER3 DNA MER1_type 0 209 1 337 336 33 62 chr12 71664536 71664681 -72617808 + HAL1b LINE L1 470 609 -739 569 325 147 20 chr12 71664699 71665155 -72617334 + L2 LINE L2 1189 1702 -1612 251 248 57 57 chr12 71665213 71665354 -72617135 + L2 LINE L2 2999 3139 -174 303 284 64 9 chr12 71665476 71665585 -72616904 - MIR SINE MIR -66 196 82 315 260 26 0 chr12 71665642 71665719 -72616770 - MIR SINE MIR -182 80 2 784 280 92 22 chr12 71666630 71666901 -72615588 - L3b LINE CR1 -180 1403 1114 1718 191 3 7 chr12 71667719 71668013 -72614476 - AluJo SINE Alu -19 293 1 314 241 56 37 chr12 71668513 71668621 -72613868 - MLT1J LTR MaLR -1 510 401 974 170 76 37 chr12 71668628 71668892 -72613597 + MLT1A1 LTR MaLR 11 365 0 303 211 150 45 chr12 71669110 71669243 -72613246 - MLT1J LTR MaLR -358 153 7 255 279 180 9 chr12 71670432 71670543 -72611946 + MIR SINE MIR 125 254 -8 287 269 64 13 chr12 71672590 71672668 -72609821 + Tigger8 DNA MER2_type 81 162 -504 289 314 8 0 chr12 71672769 71672890 -72609599 + Tigger8 DNA MER2_type 418 539 -127 2279 100 0 3 chr12 71672959 71673259 -72609230 + AluSc SINE Alu 1 299 -10 24 0 0 0 chr12 71674419 71674443 -72608046 + AT_rich Low_complexity Low_complexity 1 24 0 1659 139 13 74 chr12 71674483 71674793 -72607696 + AluJo SINE Alu 6 296 -16 1566 181 34 9 chr12 71675177 71675503 -72606986 - L1MD3 LINE L1 -10 7985 7652 342 386 47 45 chr12 71675696 71676097 -72606392 - L2 LINE L2 -55 3217 2816 300 340 66 42 chr12 71676661 71676920 -72605569 - L2 LINE L2 -1238 2076 1812 485 284 37 0 chr12 71679329 71679438 -72603051 - L2 LINE L2 -1 3271 3159 409 354 94 14 chr12 71679532 71679820 -72602669 - L3 LINE CR1 -57 1520 1210 23 0 0 0 chr12 71680344 71680367 -72602122 + AT_rich Low_complexity Low_complexity 1 23 0 278 296 71 0 chr12 71681546 71681644 -72600845 + MER103 DNA DNA 55 159 -7 270 275 14 0 chr12 71682349 71682418 -72600071 - MIR SINE MIR -68 194 125 660 190 0 9 chr12 71683190 71683306 -72599183 + FLAM_A SINE Alu 1 115 -18 187 288 85 0 chr12 71684142 71684201 -72598288 - L2 LINE L2 -41 3231 3168 21 57 0 0 chr12 71684911 71684946 -72597543 + AT_rich Low_complexity Low_complexity 1 35 0 1324 231 14 108 chr12 71686253 71686295 -72596194 - MLT2B1 LTR ERVL -8 512 468 252 0 0 0 chr12 71686295 71686323 -72596166 + (CA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr12 71686324 71686344 -72596145 + (GA)n Simple_repeat Simple_repeat 1 20 0 1324 231 14 108 chr12 71686344 71686863 -72595626 - MLT2B1 LTR ERVL -51 469 2 260 325 179 16 chr12 71688621 71688873 -72593616 + L2 LINE L2 970 1262 -2052 422 242 60 71 chr12 71690943 71691125 -72591364 + MLT1J LTR MaLR 159 338 -173 232 195 0 0 chr12 71691169 71691210 -72591279 + L2 LINE L2 3266 3306 -7 408 279 82 20 chr12 71691302 71691449 -72591040 + MLT1J LTR MaLR 356 511 0 831 207 12 6 chr12 71691492 71691656 -72590833 + AluJb SINE Alu 134 298 -14 252 267 26 78 chr12 71692175 71692291 -72590198 + L2 LINE L2 3173 3282 -31 748 159 0 97 chr12 71692889 71693096 -72589393 + MER53 DNA DNA 1 187 -2 516 253 92 94 chr12 71693546 71693874 -72588615 + MER102a DNA MER1_type 1 327 -3 202 177 16 16 chr12 71694816 71694878 -72587611 + T-rich Low_complexity Low_complexity 2 63 0 2065 125 0 3 chr12 71695493 71695829 -72586660 + AluSx SINE Alu 1 335 0 1200 196 249 20 chr12 71695896 71696293 -72586196 - MLT1D LTR MaLR 0 505 18 489 291 121 0 chr12 71697491 71697690 -72584799 - MIR SINE MIR 0 262 40 491 299 64 16 chr12 71697733 71697920 -72584569 - MIR SINE MIR -15 247 52 1649 149 9 78 chr12 71698366 71698688 -72583801 + AluJb SINE Alu 1 300 -12 643 274 97 4 chr12 71700610 71700836 -72581653 + MIR SINE MIR 2 248 -14 1380 321 99 19 chr12 71702078 71702745 -72579744 + L3 LINE CR1 520 1239 -338 1334 276 74 14 chr12 71702846 71703426 -72579063 + L2 LINE L2 1955 2569 -745 754 315 54 61 chr12 71703447 71703878 -72578611 + L2 LINE L2 2729 3148 -124 1013 183 132 0 chr12 71703878 71704075 -72578414 - MER58A DNA MER1_type -1 223 1 754 315 54 61 chr12 71704075 71704199 -72578290 + L2 LINE L2 3148 3271 -1 513 335 45 6 chr12 71704402 71704578 -72577911 + L3 LINE CR1 1384 1566 -11 276 352 19 0 chr12 71704643 71704751 -72577738 - MIR SINE MIR -50 212 103 242 330 122 53 chr12 71705968 71706156 -72576333 + MLT1K LTR MaLR 185 385 -203 256 330 0 10 chr12 71706191 71706291 -72576198 + MLT1K LTR MaLR 454 552 -36 489 292 0 0 chr12 71706311 71706424 -72576065 - MER94 DNA DNA -18 116 4 382 301 18 18 chr12 71706701 71706864 -72575625 - MER103 DNA DNA -1 165 3 183 162 0 0 chr12 71707059 71707096 -72575393 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 253 268 121 55 chr12 71708511 71708679 -72573810 - MIR SINE MIR -56 206 30 191 314 0 59 chr12 71708857 71708959 -72573530 - MIR SINE MIR -46 216 121 232 245 160 43 chr12 71709111 71709205 -72573284 - L2 LINE L2 -23 3290 3186 372 250 112 0 chr12 71709331 71709447 -72573042 - MER94 DNA DNA -4 130 2 719 285 119 42 chr12 71709593 71710099 -72572390 + MLT1H LTR MaLR 1 545 -4 288 258 11 11 chr12 71710153 71710246 -72572243 - L1MCc LINE L1 -5510 913 821 937 296 23 16 chr12 71710294 71710679 -72571810 - L1MCc LINE L1 -5942 481 94 243 125 0 0 chr12 71711885 71711925 -72570564 + (CA)n Simple_repeat Simple_repeat 2 41 0 1586 154 27 15 chr12 71712509 71712768 -72569721 - AluJo SINE Alu -30 282 21 23 54 0 0 chr12 71712804 71712841 -72569648 + AT_rich Low_complexity Low_complexity 1 37 0 1558 190 11 4 chr12 71712901 71713180 -72569309 + AluJo SINE Alu 1 281 -31 1562 159 12 4 chr12 71713509 71713760 -72568729 + AluJo SINE Alu 54 306 -6 350 104 39 52 chr12 71713760 71713837 -72568652 - L1MA10 LINE L1 -60 6274 6199 * 2734 230 50 37 chr12 71713835 71714146 -72568343 - L1ME1 LINE L1 -107 6059 5753 4238 130 16 59 chr12 71714146 71714947 -72567542 - L1MA5 LINE L1 0 6300 5534 2734 230 50 37 chr12 71714947 71715340 -72567149 - L1ME1 LINE L1 -413 5753 5366 1246 171 14 0 chr12 71715340 71715557 -72566932 - L1PA16 LINE L1 0 6166 5947 2734 230 50 37 chr12 71715557 71716336 -72566153 - L1ME1 LINE L1 -800 5366 4570 232 156 0 31 chr12 71716525 71716589 -72565900 + T-rich Low_complexity Low_complexity 4 65 0 2200 94 0 10 chr12 71717694 71717982 -72564507 + AluSx SINE Alu 1 285 -27 222 37 0 0 chr12 71717983 71718010 -72564479 + (CA)n Simple_repeat Simple_repeat 2 28 0 36 70 0 0 chr12 71718428 71718499 -72563990 + AT_rich Low_complexity Low_complexity 1 71 0 504 197 43 26 chr12 71719074 71719191 -72563298 + MIR SINE MIR 138 256 -6 991 176 0 0 chr12 71719558 71719723 -72562766 - AluJb SINE Alu -11 301 137 531 302 7 29 chr12 71720062 71720201 -72562288 - L2 LINE L2 0 3272 3137 268 328 69 29 chr12 71720461 71720635 -72561854 - L2 LINE L2 -530 2784 2604 1362 167 7 89 chr12 71721665 71721762 -72560727 + AluJo SINE Alu 43 146 -166 1318 160 73 80 chr12 71721762 71722050 -72560439 - AluJb SINE Alu -26 286 1 1362 167 7 89 chr12 71722050 71722234 -72560255 + AluJo SINE Alu 146 301 -11 24 0 0 0 chr12 71722529 71722553 -72559936 + AT_rich Low_complexity Low_complexity 1 24 0 2247 59 0 46 chr12 71722554 71722884 -72559605 + AluY SINE Alu 1 311 0 288 412 48 18 chr12 71724558 71724830 -72557659 + L2 LINE L2 2899 3178 -94 1078 150 35 75 chr12 71725165 71725391 -72557098 - MER20 DNA MER1_type 0 219 3 1192 173 62 17 chr12 71725436 71725725 -72556764 - MER33 DNA MER1_type -22 302 1 210 71 0 0 chr12 71725900 71725928 -72556561 + (TA)n Simple_repeat Simple_repeat 1 28 0 319 329 40 33 chr12 71726186 71726338 -72556151 - MIR3 SINE MIR -45 163 11 370 256 45 70 chr12 71726342 71726498 -72555991 + MIR SINE MIR 77 228 -34 216 303 103 54 chr12 71726553 71726738 -72555751 - L3b LINE CR1 -24 1559 1366 2242 166 132 42 chr12 71726960 71727507 -72554982 - MER7C DNA MER2_type -6 596 1 207 307 0 102 chr12 71727628 71727716 -72554773 - L3b LINE CR1 -289 1294 1216 343 260 126 71 chr12 71728378 71728632 -72553857 + L2 LINE L2 3046 3313 0 2132 105 10 10 chr12 71728971 71729265 -72553224 - AluSx SINE Alu -18 294 1 2163 86 11 0 chr12 71729684 71730001 -72552488 + AluY SINE Alu 1 320 0 21 0 0 0 chr12 71730136 71730157 -72552332 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr12 71731659 71731687 -72550802 + (CA)n Simple_repeat Simple_repeat 2 29 0 494 305 72 21 chr12 71733204 71733417 -72549072 + MIR SINE MIR 31 257 -5 1306 192 47 56 chr12 71733418 71733778 -72548711 + MLT2D LTR ERVL 1 357 -57 204 40 0 0 chr12 71733778 71733803 -72548686 + (TC)n Simple_repeat Simple_repeat 2 26 0 260 241 13 0 chr12 71733803 71733882 -72548607 + (TA)n Simple_repeat Simple_repeat 2 81 0 248 273 23 0 chr12 71733884 71733972 -72548517 - L1MC4 LINE L1 -1339 6703 6614 * 282 270 0 0 chr12 71733897 71733986 -72548503 + L1MC4 LINE L1 6615 6703 -1339 1298 203 74 59 chr12 71734534 71734924 -72547565 + MSTD LTR MaLR 1 396 0 795 296 42 8 chr12 71737481 71737721 -72544768 - MIR SINE MIR -3 259 12 25 0 0 0 chr12 71739238 71739263 -72543226 + AT_rich Low_complexity Low_complexity 1 25 0 508 243 211 12 chr12 71739913 71740164 -72542325 - L1ME4a LINE L1 -4 6117 5817 480 222 20 0 chr12 71740165 71740264 -72542225 + L2 LINE L2 3211 3311 -2 420 311 16 11 chr12 71740313 71740503 -72541986 - L1ME4a LINE L1 -370 5751 5561 226 289 77 32 chr12 71740916 71741072 -72541417 - L1ME4a LINE L1 -25 6096 5934 771 228 6 36 chr12 71741099 71741239 -72541250 - AluJ SINE Alu -18 294 158 2084 142 36 25 chr12 71741239 71741599 -72540890 + THE1B LTR MaLR 1 364 0 771 228 6 36 chr12 71741599 71741625 -72540864 - AluJ SINE Alu -154 158 133 776 177 8 0 chr12 71741625 71741755 -72540734 - AluJ SINE Alu -169 133 3 296 227 52 0 chr12 71741770 71741867 -72540622 - L1ME4a LINE L1 -190 5931 5830 376 340 71 46 chr12 71741887 71741980 -72540509 + MIR SINE MIR 3 92 -170 3010 74 0 0 chr12 71741980 71742374 -72540115 + L1PA8 LINE L1 5779 6172 0 376 340 71 46 chr12 71742374 71742518 -72539971 + MIR SINE MIR 92 246 -16 217 167 24 0 chr12 71742692 71742734 -72539755 - L2 LINE L2 0 3272 3230 288 281 73 52 chr12 71743045 71743141 -72539348 + L2 LINE L2 3208 3305 -8 2234 87 3 3 chr12 71745110 71745396 -72537093 + AluY SINE Alu 1 286 -25 333 47 0 0 chr12 71745399 71745442 -72537047 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 289 373 87 0 chr12 71745443 71745569 -72536920 - MIR SINE MIR -77 185 49 216 185 0 93 chr12 71745790 71745844 -72536645 - L2 LINE L2 -2 3311 3263 2108 110 29 23 chr12 71746190 71746499 -72535990 + AluSx SINE Alu 1 311 -1 669 265 5 47 chr12 71746899 71747114 -72535375 - L2 LINE L2 -1 3312 3107 1989 152 7 0 chr12 71747114 71747410 -72535079 + AluSx SINE Alu 1 298 -14 2070 274 116 11 chr12 71747414 71748129 -72534360 - L2 LINE L2 -1178 2136 1347 599 177 85 0 chr12 71748147 71748277 -72534212 - Charlie1 DNA MER1_type 0 2761 2621 * 725 231 177 0 chr12 71748262 71748465 -72534024 - Charlie1 DNA MER1_type -2522 239 1 397 318 23 0 chr12 71748465 71748597 -72533892 - L2 LINE L2 -2505 809 675 541 248 16 0 chr12 71748601 71748726 -72533763 - L2 LINE L2 -2933 381 255 2046 241 54 7 chr12 71748761 71749316 -72533173 - MLT1G LTR MaLR 0 590 10 2059 117 0 17 chr12 71749425 71749748 -72532741 - AluSx SINE Alu 0 318 1 835 217 53 124 chr12 71749748 71750144 -72532345 + MLT1A2 LTR MaLR 7 374 0 195 42 0 0 chr12 71750261 71750285 -72532204 + (CAA)n Simple_repeat Simple_repeat 1 24 0 578 205 16 0 chr12 71752428 71752550 -72529939 + MER5C DNA MER1_type 1 124 -200 2259 108 0 10 chr12 71753171 71753478 -72529011 + AluSq SINE Alu 1 304 -9 213 265 68 88 chr12 71753974 71754121 -72528368 - MIR SINE MIR -89 173 30 301 325 77 29 chr12 71754668 71754914 -72527575 + L2 LINE L2 2605 2862 -452 428 315 104 22 chr12 71755637 71755859 -72526630 - MIR SINE MIR -15 247 8 21 0 0 0 chr12 71756101 71756122 -72526367 + AT_rich Low_complexity Low_complexity 1 21 0 447 292 26 21 chr12 71757019 71757192 -72525297 + MIR SINE MIR 69 241 -21 953 160 0 51 chr12 71757527 71757702 -72524787 + AluJb SINE Alu 115 280 -32 22 70 0 0 chr12 71757872 71757915 -72524574 + AT_rich Low_complexity Low_complexity 1 43 0 264 30 0 0 chr12 71759245 71759278 -72523211 + (TA)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr12 71761215 71761236 -72521253 + GC_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr12 71761357 71761407 -72521082 + GC_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr12 71761627 71761648 -72520841 + GC_rich Low_complexity Low_complexity 1 21 0 237 119 0 0 chr12 71761674 71761695 -72520794 + (CCGGG)n Simple_repeat Simple_repeat 1 63 0 237 119 0 0 chr12 71761695 71761737 -72520752 + (CCGGG)n Simple_repeat Simple_repeat 4 45 0 25 31 0 0 chr12 71761763 71761795 -72520694 + GC_rich Low_complexity Low_complexity 1 32 0 221 163 0 23 chr12 71761868 71761911 -72520578 + CT-rich Low_complexity Low_complexity 3 44 0 303 302 134 47 chr12 71761918 71762193 -72520296 + L1M2 LINE L1 554 852 -5997 1595 168 54 54 chr12 71763874 71764172 -72518317 + AluJb SINE Alu 15 312 0 4199 73 2 0 chr12 71764616 71765164 -72517325 + L1PA7 LINE L1 5602 6150 -4 1075 241 35 101 chr12 71766464 71767008 -72515481 + MLT2B1 LTR ERVL 1 508 -12 505 263 147 0 chr12 71767020 71767176 -72515313 + MIR SINE MIR 47 225 -37 325 342 106 25 chr12 71767656 71767893 -72514596 + L2 LINE L2 2404 2659 -655 223 365 82 0 chr12 71768184 71768269 -72514220 - MIR SINE MIR -151 111 20 803 275 88 12 chr12 71768480 71768720 -72513769 + MIR SINE MIR 5 262 0 205 359 39 29 chr12 71768722 71768825 -72513664 + L2 LINE L2 3169 3272 0 1927 113 0 4 chr12 71769509 71769774 -72512715 + AluSc SINE Alu 44 307 -2 490 254 129 5 chr12 71769774 71769983 -72512506 + L1ME4a LINE L1 5660 5894 -227 263 244 12 12 chr12 71769987 71770073 -72512416 + HsTC2 DNA Tc2 1 86 -1812 1007 238 83 27 chr12 71770078 71770485 -72512004 + HsTC2 DNA Tc2 1282 1887 -11 902 148 0 22 chr12 71773508 71773643 -72508846 + AluJo SINE Alu 3 134 -178 1712 156 56 7 chr12 71775088 71775376 -72507113 - AluJb SINE Alu -10 302 1 2248 101 10 0 chr12 71775380 71775677 -72506812 - AluSg SINE Alu -10 300 1 509 275 101 0 chr12 71776770 71776919 -72505570 + MIR SINE MIR 1 164 -98 1984 148 0 7 chr12 71777168 71777466 -72505023 - AluJb SINE Alu -16 296 1 180 0 0 0 chr12 71778471 71778491 -72503998 + (CA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr12 71778989 71779012 -72503477 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr12 71779084 71779111 -72503378 + AT_rich Low_complexity Low_complexity 1 27 0 1663 165 34 28 chr12 71779210 71779501 -72502988 + AluJb SINE Alu 1 293 -19 954 189 0 0 chr12 71781318 71781477 -72501012 - FRAM SINE Alu -12 164 6 663 196 2 123 chr12 71781625 71781888 -72500601 + L1MC5 LINE L1 7012 7242 -733 301 354 8 8 chr12 71781897 71782024 -72500465 + L1MC4a LINE L1 7241 7367 -441 702 173 19 45 chr12 71782054 71782210 -72500279 + FAM SINE Alu 1 48 -1 1382 204 75 46 chr12 71782247 71782807 -72499682 + L1MC5 LINE L1 7342 7917 -44 341 348 45 13 chr12 71783901 71784056 -72498433 + MIR SINE MIR 28 187 -75 4916 91 14 10 chr12 71785273 71785988 -72496501 + L1MA2 LINE L1 5574 6291 -13 25 0 0 0 chr12 71786157 71786182 -72496307 + AT_rich Low_complexity Low_complexity 1 25 0 2000 148 13 13 chr12 71786255 71786445 -72496044 - AluSx SINE Alu -1 311 119 231 61 0 0 chr12 71786445 71786478 -72496011 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2000 148 13 13 chr12 71786478 71786598 -72495891 - AluSx SINE Alu -192 120 1 2254 103 7 3 chr12 71786875 71787185 -72495304 + AluSq SINE Alu 1 311 -2 684 220 215 0 chr12 71787740 71787940 -72494549 + MIR SINE MIR 5 247 -15 279 238 231 42 chr12 71789926 71790069 -72492420 + MLT1J LTR MaLR 1 170 -341 3579 140 95 38 chr12 71790413 71790621 -72491868 + Tigger3b DNA MER2_type 2 197 -2832 2119 111 0 23 chr12 71790621 71790928 -72491561 + AluSg SINE Alu 1 300 -10 3579 140 95 38 chr12 71790928 71791606 -72490883 + Tigger3b DNA MER2_type 197 942 -290 1643 234 73 9 chr12 71791624 71792171 -72490318 + LTR48B LTR ERV1 22 644 0 * 1676 142 10 26 chr12 71792171 71792472 -72490017 + Tigger3b DNA MER2_type 935 1230 -1 1280 199 184 89 chr12 71792515 71793112 -72489377 - MLT1E1 LTR MaLR 0 654 1 658 248 68 24 chr12 71793185 71793391 -72489098 - MIR SINE MIR -15 247 33 185 268 81 65 chr12 71793423 71793546 -72488943 + L2 LINE L2 3092 3216 -97 283 265 146 51 chr12 71793547 71793800 -72488689 - MLT1J LTR MaLR 0 511 235 358 252 19 58 chr12 71793978 71794050 -72488439 + L2 LINE L2 3171 3239 -33 1899 168 0 16 chr12 71794050 71794359 -72488130 - AluJb SINE Alu -8 304 1 358 252 19 58 chr12 71794359 71794389 -72488100 + L2 LINE L2 3239 3269 -3 227 301 0 27 chr12 71794393 71794466 -72488023 + MIR SINE MIR 189 259 -3 2268 108 39 30 chr12 71794650 71795011 -72487478 - THE1B LTR MaLR 0 364 1 183 284 0 0 chr12 71795306 71795394 -72487095 + CT-rich Low_complexity Low_complexity 3 90 0 2030 162 117 2 chr12 71795569 71795988 -72486501 - MLT1C LTR MaLR 0 467 1 362 338 22 22 chr12 71796161 71796300 -72486189 - MIR SINE MIR -98 164 26 462 251 23 47 chr12 71797210 71797381 -72485108 - L2 LINE L2 -5 3308 3142 2042 112 3 11 chr12 71797519 71797805 -72484684 - AluSx SINE Alu -28 284 1 261 307 0 0 chr12 71797809 71797884 -72484605 - L2 LINE L2 -238 3075 3001 2701 171 28 6 chr12 71798074 71798183 -72484306 - L1PB4 LINE L1 -2 6154 6046 3473 167 4 55 chr12 71798183 71799096 -72483393 - L1MA5 LINE L1 -262 6038 5172 * 4577 252 33 11 chr12 71799085 71799270 -72483219 - L1M2 LINE L1 -4497 2352 2173 207 0 0 0 chr12 71799270 71799293 -72483196 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4577 252 33 11 chr12 71799293 71799533 -72482956 - L1M2 LINE L1 -4676 2173 1940 222 37 0 0 chr12 71799533 71799560 -72482929 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4577 252 33 11 chr12 71799560 71800462 -72482027 - L1M2 LINE L1 -4909 1940 994 402 370 16 8 chr12 71800491 71800618 -72481871 - L1M2 LINE L1 -6034 815 688 891 288 40 7 chr12 71800833 71801132 -72481357 - L1M2 LINE L1 -6535 314 6 24 0 0 0 chr12 71801614 71801638 -72480851 + AT_rich Low_complexity Low_complexity 1 24 0 2241 133 0 0 chr12 71801753 71802054 -72480435 - AluSx SINE Alu -11 301 1 2279 104 0 13 chr12 71802923 71803230 -72479259 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr12 71803403 71803425 -72479064 + AT_rich Low_complexity Low_complexity 1 22 0 1919 139 30 23 chr12 71804653 71804762 -72477727 + AluJb SINE Alu 1 108 -204 2303 105 0 13 chr12 71804762 71805067 -72477422 - AluSq SINE Alu -12 301 1 1919 139 30 23 chr12 71805067 71805260 -72477229 + AluJb SINE Alu 108 305 -7 408 267 81 31 chr12 71805744 71805905 -72476584 + MIR SINE MIR 81 249 -13 414 0 0 0 chr12 71806080 71806126 -72476363 + (TG)n Simple_repeat Simple_repeat 2 47 0 361 299 89 6 chr12 71806630 71806787 -72475702 - MIR SINE MIR -65 197 28 279 318 65 0 chr12 71806819 71806926 -72475563 + L2 LINE L2 3200 3313 0 2257 114 10 0 chr12 71807927 71808235 -72474254 + AluSx SINE Alu 2 312 0 201 357 134 9 chr12 71808294 71808406 -72474083 - L2 LINE L2 -223 3049 2924 3215 196 84 19 chr12 71808431 71809398 -72473091 - MER69 DNA AcHobo -1 2525 1496 22 0 0 0 chr12 71809722 71809744 -72472745 + AT_rich Low_complexity Low_complexity 1 22 0 2454 30 7 0 chr12 71809745 71810041 -72472448 - L1PA2 LINE L1 -1 6154 5857 653 253 42 16 chr12 71810203 71810393 -72472096 - MER69 DNA AcHobo -2208 318 124 227 178 0 22 chr12 71810432 71810477 -72472012 + CT-rich Low_complexity Low_complexity 1 44 0 2289 199 167 8 chr12 71810910 71811629 -72470860 + L1MC4 LINE L1 6458 7290 -752 418 159 21 7 chr12 71811629 71811822 -72470667 + AluJo SINE Alu 76 303 0 1699 203 72 15 chr12 71811844 71812318 -72470171 + L1MC4 LINE L1 7276 7776 -266 22 35 0 0 chr12 71812322 71812351 -72470138 + AT_rich Low_complexity Low_complexity 1 29 0 315 327 9 0 chr12 71812353 71812466 -72470023 - MER69 DNA AcHobo -2412 114 1 2512 61 0 0 chr12 71812520 71812816 -72469673 + AluY SINE Alu 1 296 -15 226 343 99 21 chr12 71813995 71814228 -72468261 + MLT1J LTR MaLR 167 417 -94 1114 274 57 9 chr12 71814404 71814824 -72467665 + MLT1L LTR MaLR 170 609 -6 247 286 168 17 chr12 71815369 71815488 -72467001 - MER5A DNA MER1_type -50 139 3 1752 179 54 14 chr12 71815725 71816076 -72466413 - MLT1A1 LTR MaLR 0 365 1 432 320 113 15 chr12 71816292 71816495 -72465994 + L3 LINE CR1 1353 1575 -2 772 198 57 0 chr12 71816622 71816779 -72465710 + FRAM SINE Alu 1 165 -11 1920 142 6 38 chr12 71816808 71817125 -72465364 + AluJo SINE Alu 1 307 -5 2311 102 0 0 chr12 71817542 71817837 -72464652 - AluSx SINE Alu -17 295 1 599 335 7 56 chr12 71819251 71819520 -72462969 + L2 LINE L2 3017 3272 0 197 327 58 39 chr12 71819798 71819902 -72462587 - MIR SINE MIR -69 139 34 1157 178 0 11 chr12 71819936 71820121 -72462368 - AluSg/x SINE Alu -15 295 113 349 167 0 0 chr12 71820121 71820175 -72462314 - Alu SINE Alu -245 56 3 350 304 36 0 chr12 71820441 71820579 -72461910 + MLT1J LTR MaLR 3 145 -366 1223 253 80 22 chr12 71820602 71821031 -72461458 + MLT1F1 LTR MaLR 7 460 -107 5003 56 28 0 chr12 71822615 71823295 -72459194 + L1PA6 LINE L1 5254 5952 -202 734 307 89 12 chr12 71823892 71824546 -72457943 - L1MEc LINE L1 -4612 1784 1081 424 72 29 0 chr12 71825681 71825750 -72456739 + (GAA)n Simple_repeat Simple_repeat 1 71 0 1129 277 102 30 chr12 71826832 71827930 -72454559 - L1M4 LINE L1 -2631 3515 2339 330 349 57 10 chr12 71828351 71828543 -72453946 + L1M4 LINE L1 5052 5252 -894 561 175 25 33 chr12 71828580 71828700 -72453789 - AluJo SINE Alu -177 135 17 3283 113 14 20 chr12 71828706 71828723 -72453766 - L1PA5 LINE L1 0 6154 6138 207 0 0 0 chr12 71828723 71828746 -72453743 + (TA)n Simple_repeat Simple_repeat 2 24 0 3283 113 14 20 chr12 71828746 71829284 -72453205 - L1PA5 LINE L1 -16 6138 5602 361 162 26 16 chr12 71829527 71829605 -72452884 - AluS SINE Alu -225 77 7 21 36 0 0 chr12 71829692 71829720 -72452769 + AT_rich Low_complexity Low_complexity 1 28 0 584 267 69 13 chr12 71829734 71830037 -72452452 + L1M4 LINE L1 5013 5332 -814 1150 40 0 7 chr12 71830039 71830189 -72452300 - L1PA7 LINE L1 -207 5947 5799 640 139 75 74 chr12 71830190 71830398 -72452091 + L1PA7 LINE L1 5960 6172 0 1526 130 4 37 chr12 71831240 71831510 -72450979 + AluSx SINE Alu 1 261 -51 456 139 0 139 chr12 71832606 71832800 -72449689 - AluSq SINE Alu -85 228 62 230 269 64 7 chr12 71833752 71833893 -72448596 + (TTAGG)n Simple_repeat Simple_repeat 5 153 0 635 122 19 0 chr12 71834210 71834317 -72448172 + G-rich Low_complexity Low_complexity 4 112 0 310 274 0 96 chr12 71834617 71834763 -72447726 + L1ME4a LINE L1 5989 6120 -1 558 261 109 113 chr12 71836253 71836758 -72445731 - MLT1J LTR MaLR -6 505 3 234 319 0 0 chr12 71836766 71836838 -72445651 - MIR SINE MIR -113 149 78 526 257 155 51 chr12 71838511 71838575 -72443914 - MLT1K LTR MaLR -21 567 511 927 51 0 0 chr12 71838575 71838692 -72443797 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 526 257 155 51 chr12 71838692 71838923 -72443566 - MLT1K LTR MaLR -77 511 241 1851 81 4 0 chr12 71839282 71839565 -72442924 - AluSc SINE Alu 0 328 45 372 278 57 51 chr12 71839668 71839844 -72442645 - MIR SINE MIR -78 184 8 223 311 134 49 chr12 71839989 71840153 -72442336 - MIR3 SINE MIR -25 183 6 548 283 0 53 chr12 71840171 71840249 -72442240 + MIR SINE MIR 82 163 -99 448 233 86 6 chr12 71840249 71840412 -72442077 + MER104 DNA MER2_type 5 180 0 548 283 0 53 chr12 71840412 71840520 -72441969 + MIR SINE MIR 163 258 -4 186 133 0 0 chr12 71840520 71840550 -72441939 + (TGG)n Simple_repeat Simple_repeat 2 31 0 186 271 68 34 chr12 71841691 71841750 -72440739 + L2 LINE L2 3161 3221 -51 1590 126 118 11 chr12 71842735 71843005 -72439484 + AluSg SINE Alu 3 301 -9 659 184 9 0 chr12 71844024 71844138 -72438351 - FLAM_C SINE Alu -19 124 10 28 29 0 0 chr12 71844536 71844571 -72437918 + AT_rich Low_complexity Low_complexity 1 35 0 1997 127 35 0 chr12 71844574 71844858 -72437631 + AluSp SINE Alu 1 294 -19 21 0 0 0 chr12 71845681 71845702 -72436787 + AT_rich Low_complexity Low_complexity 1 21 0 2161 76 0 11 chr12 71846225 71846501 -72435988 - AluSg SINE Alu -8 302 30 203 237 0 0 chr12 71846959 71846997 -72435492 + (ATGGTG)n Simple_repeat Simple_repeat 5 42 0 371 263 50 0 chr12 71847242 71847341 -72435148 + MIR SINE MIR 84 187 -75 585 192 56 24 chr12 71847683 71847808 -72434681 + FLAM_A SINE Alu 4 132 -1 2284 113 0 0 chr12 71847876 71848178 -72434311 - AluSx SINE Alu -10 302 1 1040 329 91 38 chr12 71848341 71849255 -72433234 + L2 LINE L2 1915 2876 -438 317 247 9 101 chr12 71849659 71849840 -72432649 - AluSp/q SINE Alu 0 303 163 402 292 134 28 chr12 71850825 71851041 -72431448 + MIR SINE MIR 24 262 0 221 373 169 30 chr12 71851143 71851379 -72431110 + L3 LINE CR1 186 454 -1123 363 363 46 30 chr12 71851387 71851649 -72430840 + L3 LINE CR1 413 678 -899 417 297 91 39 chr12 71851952 71852810 -72429679 - L1MEc LINE L1 -4704 1692 790 2605 107 18 10 chr12 71853010 71853404 -72429085 + L1PA14 LINE L1 5765 6161 0 639 252 65 0 chr12 71853433 71853588 -72428901 + MER96 DNA MER1_type? 11 175 0 306 306 49 38 chr12 71853588 71853995 -72428494 - L1MEd LINE L1 -4752 1558 1117 1703 194 21 3 chr12 71853995 71854335 -72428154 - MER7A DNA MER2_type -1 345 2 306 306 49 38 chr12 71854335 71854560 -72427929 - L1MEd LINE L1 -5193 1117 896 786 286 35 4 chr12 71855298 71855525 -72426964 - MIR SINE MIR -21 241 8 33946 66 9 13 chr12 71856269 71861407 -72421082 + L1P2 LINE L1 604 5723 -432 1170 138 17 0 chr12 71861523 71861704 -72420785 + AluSg/x SINE Alu 115 298 -14 321 318 84 0 chr12 71861706 71861813 -72420676 - MER5A DNA MER1_type -57 132 17 458 249 54 54 chr12 71861920 71862105 -72420384 + MIR SINE MIR 11 195 -67 1973 144 3 3 chr12 71862187 71862486 -72420003 + AluSx SINE Alu 1 299 -13 317 258 33 9 chr12 71862521 71862698 -72419791 - LTR16C LTR ERVL -244 247 1 203 293 0 0 chr12 71862700 71862741 -72419748 - L2 LINE L2 -13 3259 3219 2109 157 0 0 chr12 71865077 71865389 -72417100 - AluSx SINE Alu 0 312 1 46 0 0 0 chr12 71867031 71867077 -72415412 + AT_rich Low_complexity Low_complexity 1 46 0 240 260 167 10 chr12 71868602 71868698 -72413791 - MIR SINE MIR -32 230 120 268 239 42 49 chr12 71869770 71869912 -72412577 - L1ME4a LINE L1 -17 6104 5964 * 665 290 119 30 chr12 71869901 71870145 -72412344 - L1MC4a LINE L1 -393 5728 5507 3562 148 5 32 chr12 71870145 71870767 -72411722 - MER6A DNA MER2_type 0 605 1 665 290 119 30 chr12 71870767 71871146 -72411343 - L1MC4a LINE L1 -614 5507 5267 593 261 75 27 chr12 71871504 71871692 -72410797 + MIR SINE MIR 14 210 -52 1163 262 145 18 chr12 71872498 71872984 -72409505 + L2 LINE L2 2758 3303 -10 2667 83 22 11 chr12 71873159 71873519 -72408970 + THE1B LTR MaLR 1 364 0 1786 232 127 18 chr12 71873619 71874249 -72408240 + L1ME3A LINE L1 5416 6114 -56 210 163 23 0 chr12 71874398 71874441 -72408048 + G-rich Low_complexity Low_complexity 3 46 0 2390 133 47 47 chr12 71875096 71875524 -72406965 - MSTA LTR MaLR 0 428 1 28 29 0 0 chr12 71878052 71878087 -72404402 + AT_rich Low_complexity Low_complexity 1 35 0 694 241 24 18 chr12 71878654 71878824 -72403665 + MER5B DNA MER1_type 8 178 0 358 313 52 9 chr12 71879696 71879811 -72402678 - L2 LINE L2 0 3272 3153 216 380 9 9 chr12 71879840 71879948 -72402541 + L2 LINE L2 2934 3041 -231 2182 132 0 77 chr12 71879949 71880015 -72402474 + MER1B DNA MER1_type 2 71 -2641 2261 107 24 0 chr12 71880015 71880313 -72402176 + AluSq SINE Alu 1 305 -8 2182 132 0 77 chr12 71880313 71880611 -72401878 + MER1B DNA MER1_type 71 338 -1 565 319 19 93 chr12 71880613 71880870 -72401619 + L2 LINE L2 3035 3272 0 216 297 101 40 chr12 71880905 71881053 -72401436 - L2 LINE L2 -183 3089 2933 2039 113 17 23 chr12 71881576 71881876 -72400613 - AluSg SINE Alu -12 298 1 300 319 121 0 chr12 71882031 71882147 -72400342 - L2 LINE L2 0 3272 3143 800 241 12 6 chr12 71882231 71882401 -72400088 + MER5A DNA MER1_type 19 189 0 1978 126 62 59 chr12 71882696 71883070 -72399419 - THE1C LTR MaLR 0 375 1 182 214 24 0 chr12 71884937 71884979 -72397510 + MIR SINE MIR 99 141 -67 2216 127 0 0 chr12 71885010 71885310 -72397179 + AluSx SINE Alu 5 304 -8 228 344 0 0 chr12 71886330 71886391 -72396098 + L2 LINE L2 3136 3196 -76 1929 153 70 25 chr12 71886764 71887123 -72395366 - THE1C LTR MaLR 0 375 1 1844 97 0 8 chr12 71887447 71887684 -72394805 - AluSx SINE Alu -77 235 1 918 269 85 41 chr12 71888123 71888487 -72394002 + L2 LINE L2 2933 3312 -1 4045 163 50 32 chr12 71888806 71889609 -72392880 + L1MA9 LINE L1 5486 6302 -10 322 223 182 9 chr12 71890246 71890358 -72392131 - MIR SINE MIR -64 144 32 216 245 0 0 chr12 71890534 71890583 -72391906 + GA-rich Low_complexity Low_complexity 2 50 0 336 125 0 0 chr12 71891082 71891146 -72391343 + (TC)n Simple_repeat Simple_repeat 2 65 0 1309 215 155 3 chr12 71891855 71892204 -72390285 - MER57A LTR ERV1 0 403 2 1999 117 4 0 chr12 71892542 71892808 -72389681 - AluSx SINE Alu -45 267 1 446 364 29 32 chr12 71893044 71893324 -72389165 - L2 LINE L2 -563 2751 2473 1617 159 14 35 chr12 71893647 71893936 -72388553 - AluJo SINE Alu -17 295 13 336 333 105 0 chr12 71894033 71894195 -72388294 + MIR SINE MIR 53 231 -31 598 293 122 9 chr12 71894223 71894452 -72388037 + MIR SINE MIR 8 262 0 307 301 55 7 chr12 71895396 71895557 -72386932 + MIR SINE MIR 6 170 -64 314 312 49 97 chr12 71895597 71895905 -72386584 + L2 LINE L2 2979 3271 -1 304 322 231 0 chr12 71897028 71897227 -72385262 + MIR SINE MIR 8 252 -10 184 231 144 58 chr12 71899750 71899854 -72382635 - MIR3 SINE MIR -95 113 1 406 223 46 46 chr12 71900012 71900142 -72382347 + MIR SINE MIR 14 143 -119 766 268 45 29 chr12 71900174 71900417 -72382072 - MIR SINE MIR -4 258 12 554 331 0 0 chr12 71900502 71900647 -72381842 + MIR SINE MIR 108 252 -10 306 136 0 0 chr12 71901968 71902012 -72380477 + U2 snRNA snRNA 1 44 -144 2118 74 0 7 chr12 71902654 71902924 -72379565 + AluSc SINE Alu 41 308 -1 227 200 0 36 chr12 71903692 71903747 -72378742 + L2 LINE L2 3032 3084 -188 1818 102 28 4 chr12 71903814 71904069 -72378420 - HSMAR1 DNA Mariner -4 1283 1023 1251 92 0 6 chr12 71904056 71904220 -72378269 + HSMAR1 DNA Mariner 559 721 -566 * 4058 90 9 6 chr12 71904220 71904762 -72377727 - HSMAR1 DNA Mariner -271 1016 473 1277 215 121 21 chr12 71904854 71905193 -72377296 - MER93b LTR ERV1 0 373 1 4203 103 15 0 chr12 71905217 71905763 -72376726 + MER41A LTR ERV1 1 554 0 580 217 189 111 chr12 71906287 71906790 -72375699 + MER34 LTR ERV1 1 542 0 200 176 59 15 chr12 71906911 71906979 -72375510 + (TA)n Simple_repeat Simple_repeat 1 71 0 44 0 0 0 chr12 71907123 71907167 -72375322 + AT_rich Low_complexity Low_complexity 1 44 0 1704 165 0 4 chr12 71907314 71907586 -72374903 - AluJb SINE Alu -9 303 33 795 231 10 35 chr12 71907885 71908084 -72374405 - MLT1K LTR MaLR 0 588 395 2129 106 3 7 chr12 71908487 71908824 -72373665 - AluSg SINE Alu 0 310 1 25 0 0 0 chr12 71908900 71908925 -72373564 + AT_rich Low_complexity Low_complexity 1 25 0 191 238 0 16 chr12 71909446 71909509 -72372980 + GA-rich Low_complexity Low_complexity 2 63 0 288 365 56 25 chr12 71909557 71909718 -72372771 + MIR SINE MIR 21 191 -71 2126 123 3 0 chr12 71909718 71910011 -72372478 + AluSq SINE Alu 1 294 -19 288 365 56 25 chr12 71910011 71910046 -72372443 + MIR SINE MIR 191 223 -39 716 182 30 64 chr12 71911496 71911699 -72370790 + L1MC4 LINE L1 7662 7857 -185 269 384 9 0 chr12 71911721 71911833 -72370656 + MER5B DNA MER1_type 59 171 -7 595 239 0 44 chr12 71912447 71912606 -72369883 - MER103 DNA DNA -4 162 11 368 254 219 32 chr12 71912934 71913024 -72369465 + L2 LINE L2 2455 2527 -787 1455 179 0 0 chr12 71913024 71913270 -72369219 - AluJb SINE Alu -66 246 1 368 254 219 32 chr12 71913270 71913346 -72369143 + L2 LINE L2 2527 2588 -726 2130 146 60 14 chr12 71913346 71913695 -72368794 + MLT1A1 LTR MaLR 1 365 0 368 254 219 32 chr12 71913695 71913897 -72368592 + L2 LINE L2 2588 2893 -421 317 252 117 10 chr12 71914076 71914179 -72368310 + MER5C DNA MER1_type 9 122 -202 228 212 182 0 chr12 71914296 71914362 -72368127 + MER5C DNA MER1_type 247 324 0 213 341 11 66 chr12 71914407 71914589 -72367900 + L2 LINE L2 3118 3289 -24 370 310 26 0 chr12 71915385 71915501 -72366988 + MIR3 SINE MIR 90 208 0 2383 103 3 0 chr12 71915805 71916117 -72366372 - AluSp SINE Alu 0 313 1 27873 63 8 3 chr12 71916293 71920745 -72361744 - L1PA6 LINE L1 0 6154 1712 513 258 7 60 chr12 71920840 71920947 -72361542 + MER5A DNA MER1_type 47 145 -44 882 212 18 72 chr12 71920947 71921169 -72361320 - MER63A DNA MER1_type 0 210 1 513 258 7 60 chr12 71921169 71921212 -72361277 + MER5A DNA MER1_type 145 189 0 21 0 0 0 chr12 71921465 71921486 -72361003 + AT_rich Low_complexity Low_complexity 1 21 0 2686 138 47 20 chr12 71921524 71922031 -72360458 - L1MA9 LINE L1 -25 6287 5767 2340 93 3 10 chr12 71922165 71922475 -72360014 + AluY SINE Alu 2 309 -2 1126 239 9 0 chr12 71924146 71924364 -72358125 - MER58A DNA MER1_type -1 223 4 22 35 0 0 chr12 71924840 71924869 -72357620 + AT_rich Low_complexity Low_complexity 1 29 0 2135 307 68 38 chr12 71925260 71926452 -72356037 - L2 LINE L2 -251 3062 1838 21 0 0 0 chr12 71926527 71926548 -72355941 + AT_rich Low_complexity Low_complexity 1 21 0 495 281 85 25 chr12 71926960 71927159 -72355330 + MLT1K LTR MaLR 378 588 0 279 194 9 148 chr12 71928082 71928177 -72354312 + L1ME LINE L1 5711 5785 -336 3707 103 124 14 chr12 71928177 71928748 -72353741 + MER51A LTR ERV1 1 634 0 279 194 9 148 chr12 71928748 71928760 -72353729 + L1ME LINE L1 5785 5797 -324 227 263 13 0 chr12 71928914 71928990 -72353499 + L1MC/D LINE L1 5735 5811 -1997 2147 111 0 3 chr12 71929184 71929482 -72353007 + AluY SINE Alu 1 297 -14 1336 118 0 0 chr12 71929486 71929672 -72352817 + AluSc SINE Alu 124 309 0 211 378 0 16 chr12 71930552 71930679 -72351810 - L3b LINE CR1 -346 1237 1113 1841 153 0 41 chr12 71931883 71932203 -72350286 - AluJb SINE Alu -5 307 1 717 192 8 8 chr12 71932310 71932435 -72350054 - FLAM_A SINE Alu -8 125 1 2083 143 7 0 chr12 71933497 71933798 -72348691 - AluSx SINE Alu -9 303 1 788 264 98 81 chr12 71934056 71934476 -72348013 + L2 LINE L2 2846 3272 0 21 0 0 0 chr12 71934895 71934916 -72347573 + AT_rich Low_complexity Low_complexity 1 21 0 236 418 0 12 chr12 71935332 71935502 -72346987 + L2 LINE L2 2806 2973 -299 1531 148 39 58 chr12 71935502 71935861 -72346628 + MSTA LTR MaLR 77 428 0 237 295 58 89 chr12 71935861 71935982 -72346507 + L2 LINE L2 2932 3046 -226 2266 107 0 7 chr12 71935982 71936290 -72346199 - AluSg SINE Alu -4 306 1 237 295 58 89 chr12 71936290 71936358 -72346131 + L2 LINE L2 3046 3115 -157 305 324 0 28 chr12 71938392 71938500 -72343989 - MIR SINE MIR -60 148 44 25 51 0 0 chr12 71939931 71939970 -72342519 + AT_rich Low_complexity Low_complexity 1 39 0 1891 161 0 16 chr12 71940222 71940538 -72341951 + AluSx SINE Alu 1 311 -1 32 43 0 0 chr12 71941239 71941285 -72341204 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 71941336 71941358 -72341131 + AT_rich Low_complexity Low_complexity 1 22 0 469 288 106 0 chr12 71942017 71942149 -72340340 - MIR SINE MIR -98 164 19 333 279 288 0 chr12 71942162 71942335 -72340154 + MIR SINE MIR 38 260 -2 188 0 74 0 chr12 71942622 71942649 -72339840 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2418 54 0 17 chr12 71942655 71942953 -72339536 - AluY SINE Alu -18 293 1 471 251 145 11 chr12 71943853 71944032 -72338457 + MIR SINE MIR 59 261 -1 549 295 110 40 chr12 71944172 71944399 -72338090 + MIR SINE MIR 3 245 -17 553 288 171 0 chr12 71944672 71944894 -72337595 - MIR SINE MIR 0 262 3 2948 52 0 5 chr12 71945131 71945499 -72336990 + L1PA8 LINE L1 5795 6160 -12 234 0 0 0 chr12 71945515 71945541 -72336948 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 1543 214 60 70 chr12 71946884 71947471 -72335018 + MLT1E2 LTR MaLR 70 624 -2 799 244 87 25 chr12 71948777 71949019 -72333470 + MIR SINE MIR 6 262 0 216 342 179 34 chr12 71949855 71949972 -72332517 + MIR SINE MIR 8 141 -121 189 0 0 0 chr12 71949992 71950013 -72332476 + (CA)n Simple_repeat Simple_repeat 2 22 0 276 53 0 0 chr12 71951336 71951374 -72331115 + (TATG)n Simple_repeat Simple_repeat 2 39 0 2213 100 0 0 chr12 71951374 71951655 -72330834 - AluSx SINE Alu -27 285 5 352 277 0 8 chr12 71951661 71951780 -72330709 + L1ME2 LINE L1 6038 6155 -9 23 0 0 0 chr12 71951801 71951824 -72330665 + AT_rich Low_complexity Low_complexity 1 23 0 1073 270 95 58 chr12 71953186 71954204 -72328285 + L1MEc LINE L1 789 1865 -4531 2170 122 3 0 chr12 71954204 71954499 -72327990 + AluSx SINE Alu 1 296 -16 1073 270 95 58 chr12 71954499 71954769 -72327720 + L1MEc LINE L1 1865 2124 -4272 218 313 12 24 chr12 71956038 71956121 -72326368 + L2 LINE L2 3189 3270 -2 214 260 20 0 chr12 71956244 71956294 -72326195 + (TG)n Simple_repeat Simple_repeat 2 52 0 237 192 27 103 chr12 71956446 71956551 -72325938 + L1MC5 LINE L1 7605 7716 -245 2306 106 3 0 chr12 71956551 71956854 -72325635 - AluSx SINE Alu -6 306 3 237 192 27 103 chr12 71956854 71956995 -72325494 + L1MC5 LINE L1 7716 7901 -60 304 77 0 0 chr12 71957279 71957318 -72325171 + tRNA-Arg-AGA tRNA tRNA 1 39 -37 2331 95 0 0 chr12 71958349 71958645 -72323844 - AluSx SINE Alu -16 296 1 2458 173 56 89 chr12 71958917 71959632 -72322857 - LTR8 LTR ERV1 0 691 1 260 286 232 9 chr12 71959656 71959768 -72322721 + MIR SINE MIR 8 144 -118 269 217 113 17 chr12 71961916 71962031 -72320458 + LTR33A LTR ERVL 344 469 -54 383 245 117 88 chr12 71962176 71962699 -72319790 + MER34 LTR ERV1 5 542 0 778 190 51 46 chr12 71962816 71963011 -72319478 - MER21B LTR ERV1 -108 755 560 2706 154 17 19 chr12 71963032 71963550 -72318939 + MER101B LTR ERV1 54 570 0 2092 229 43 4 chr12 71963563 71964047 -72318442 - MER21B LTR ERV1 -342 521 19 516 147 0 53 chr12 71964072 71964167 -72318322 - MER21B LTR ERV1 -773 90 1 222 195 0 0 chr12 71964384 71964425 -72318064 + CT-rich Low_complexity Low_complexity 2 42 0 1633 206 55 53 chr12 71964521 71965066 -72317423 - MER34C LTR ERV1 0 585 40 1320 147 51 11 chr12 71965564 71965837 -72316652 + MER33 DNA MER1_type 1 284 -40 1372 237 18 11 chr12 71965837 71966111 -72316378 + AluJo SINE Alu 1 276 -36 186 43 0 0 chr12 71966378 71966401 -72316088 + (TGGA)n Simple_repeat Simple_repeat 4 26 0 2509 164 13 7 chr12 71966832 71967290 -72315199 + MLT1C LTR MaLR 7 467 0 211 300 89 22 chr12 71967381 71967471 -72315018 + L2 LINE L2 3123 3218 -54 2286 92 3 0 chr12 71967656 71967948 -72314541 + AluY SINE Alu 1 293 -18 641 299 72 0 chr12 71968219 71968426 -72314063 - MIR SINE MIR -1 261 40 1102 70 0 0 chr12 71969030 71969173 -72313316 + L1PA6 LINE L1 5999 6141 -13 198 0 0 0 chr12 71969410 71969432 -72313057 + (T)n Simple_repeat Simple_repeat 1 22 0 216 0 0 0 chr12 71969977 71970001 -72312488 + (A)n Simple_repeat Simple_repeat 1 24 0 2052 113 35 0 chr12 71971908 71972191 -72310298 + AluSg SINE Alu 1 293 -17 224 366 82 66 chr12 71972305 71972729 -72309760 + L2 LINE L2 2840 3270 -2 1697 140 198 8 chr12 71972951 71973309 -72309180 - MSTA LTR MaLR -2 426 1 1134 203 61 28 chr12 71973428 71973787 -72308702 - MER114 LTR ERV -2 646 276 621 199 126 21 chr12 71974570 71974761 -72307728 - MER114 LTR ERV -393 255 45 206 85 0 85 chr12 71975053 71975112 -72307377 + (TTTTTA)n Simple_repeat Simple_repeat 1 54 0 296 327 10 0 chr12 71975555 71975656 -72306833 - L2 LINE L2 -547 2767 2666 358 161 11 86 chr12 71976086 71976179 -72306310 - MIR SINE MIR 0 262 177 758 260 106 4 chr12 71976567 71976813 -72305676 + L2 LINE L2 2474 2744 -570 2034 174 69 48 chr12 71976813 71977190 -72305299 + MLT1D LTR MaLR 1 392 -113 2286 166 60 16 chr12 71977190 71977637 -72304852 + MLT1C LTR MaLR 1 467 0 2034 174 69 48 chr12 71977637 71977754 -72304735 + MLT1D LTR MaLR 392 505 0 468 236 64 32 chr12 71977763 71977795 -72304694 + L2 LINE L2 2749 2779 -535 2250 114 141 5 chr12 71977795 71978172 -72304317 + MSTA LTR MaLR 1 428 0 468 236 64 32 chr12 71978172 71978296 -72304193 + L2 LINE L2 2779 2910 -404 1403 151 15 12 chr12 71978296 71978555 -72303934 + THE1A LTR MaLR 1 260 -95 * 1704 163 19 16 chr12 71978546 71978859 -72303630 - MSTA-int LTR MaLR -1337 314 1 1987 138 162 8 chr12 71978859 71979230 -72303259 - MSTA LTR MaLR 0 428 1 289 286 0 44 chr12 71979240 71979331 -72303158 + L2 LINE L2 3227 3313 0 3090 35 3 0 chr12 71980769 71981140 -72301349 + L1PA5 LINE L1 5782 6153 -1 1930 154 3 3 chr12 71981450 71981735 -72300754 + AluJo SINE Alu 2 286 -26 554 290 149 5 chr12 71981780 71981994 -72300495 + MIR SINE MIR 10 254 -8 2484 199 62 68 chr12 71982309 71982967 -72299522 - MLT1E1 LTR MaLR 0 654 1 21 0 0 0 chr12 71983028 71983049 -72299440 + AT_rich Low_complexity Low_complexity 1 21 0 446 299 107 62 chr12 71983076 71983430 -72299059 + HAL1 LINE L1 1 370 -2137 2661 158 43 12 chr12 71983446 71984004 -72298485 + L1MA9 LINE L1 3196 3770 -2376 * 4498 158 55 62 chr12 71983998 71984581 -72297908 + L1MA9 LINE L1 5170 5745 -567 5256 75 13 9 chr12 71984581 71985274 -72297215 + SVA Other Other 691 1386 0 4498 158 55 62 chr12 71985274 71985829 -72296660 + L1MA9 LINE L1 5745 6302 -10 291 180 0 112 chr12 71985846 71985935 -72296554 + LTR48B LTR ERV1 388 466 -178 * 380 153 0 0 chr12 71985933 71985992 -72296497 + MER39B LTR ERV1 595 653 0 13209 154 46 48 chr12 71986130 71987983 -72294506 + L1MA4A LINE L1 1215 3071 -3934 2231 104 51 28 chr12 71987983 71988337 -72294152 + THE1B LTR MaLR 3 364 0 13209 154 46 48 chr12 71988337 71989878 -72292611 + L1MA4A LINE L1 3071 4614 -2391 2111 136 0 0 chr12 71989878 71990172 -72292317 + AluSg SINE Alu 1 294 -16 13209 154 46 48 chr12 71990172 71990345 -72292144 + L1MA4A LINE L1 4614 4786 -2219 1898 156 3 3 chr12 71990345 71990633 -72291856 + AluSx SINE Alu 1 288 -24 13209 154 46 48 chr12 71990633 71991333 -72291156 + L1MA4A LINE L1 4786 5486 -1519 2336 94 17 6 chr12 71991333 71991685 -72290804 + L1MA2 LINE L1 5948 6303 -1 13209 154 46 48 chr12 71991685 71993204 -72289285 + L1MA4A LINE L1 5486 7001 -4 2111 122 0 13 chr12 71993302 71993606 -72288883 + AluSx SINE Alu 1 300 -12 1779 166 3 35 chr12 71994117 71994431 -72288058 + AluSx SINE Alu 1 304 -8 186 43 0 0 chr12 71994961 71994984 -72287505 + (TA)n Simple_repeat Simple_repeat 2 24 0 852 143 0 0 chr12 71995304 71995437 -72287052 + FLAM_C SINE Alu 1 133 0 25 65 0 0 chr12 71995475 71995521 -72286968 + AT_rich Low_complexity Low_complexity 1 46 0 1911 167 3 3 chr12 71995574 71995880 -72286609 + AluSx SINE Alu 7 312 0 1063 42 5 58 chr12 71995885 71996075 -72286414 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 24 0 0 0 chr12 71996430 71996454 -72286035 + AT_rich Low_complexity Low_complexity 1 24 0 3036 163 25 19 chr12 71996478 71997067 -72285422 + L1PA16 LINE L1 5574 6166 0 543 277 91 13 chr12 71997127 71997358 -72285131 + L1MC4a LINE L1 5685 5933 -1875 2347 95 0 3 chr12 71997451 71997756 -72284733 - AluSx SINE Alu -8 304 1 2889 254 95 35 chr12 71997977 71999098 -72283391 - L2 LINE L2 0 3313 2133 404 258 0 53 chr12 71999134 71999266 -72283223 + L1ME3A LINE L1 6035 6159 -11 2505 62 3 7 chr12 71999428 71999736 -72282753 - AluY SINE Alu -4 307 1 353 141 218 0 chr12 72000567 72000645 -72281844 - L1PA13 LINE L1 -5 6158 6064 * 14585 161 30 11 chr12 72000626 72003823 -72278666 - L1PA12 LINE L1 -4040 3544 11 23 33 0 0 chr12 72004332 72004362 -72278127 + AT_rich Low_complexity Low_complexity 1 30 0 3921 156 82 14 chr12 72004376 72005109 -72277380 - LTR39 LTR ERV1 0 783 1 4377 105 9 3 chr12 72005225 72005861 -72276628 + MER51C LTR ERV1 1 640 0 353 265 118 0 chr12 72005863 72005965 -72276524 - MIR SINE MIR -148 114 1 300 260 104 0 chr12 72006049 72006145 -72276344 + HAL1 LINE L1 55 160 -2347 223 311 94 38 chr12 72006519 72006625 -72275864 - L2 LINE L2 -220 3052 2941 659 241 69 0 chr12 72006870 72007044 -72275445 + MER5A DNA MER1_type 3 188 -1 691 218 128 5 chr12 72007460 72007648 -72274841 - MIR SINE MIR 0 262 52 1551 153 0 37 chr12 72007688 72007956 -72274533 - AluSx SINE Alu -22 290 33 436 283 178 11 chr12 72007997 72008188 -72274301 - L2 LINE L2 -855 2459 2237 2253 94 3 13 chr12 72008196 72008504 -72273985 + AluSx SINE Alu 1 305 -7 1394 212 20 3 chr12 72008545 72008837 -72273652 + AluJo SINE Alu 1 297 -15 751 135 23 23 chr12 72008976 72009109 -72273380 - FLAM_C SINE Alu 0 133 1 2324 84 10 0 chr12 72010507 72010805 -72271684 - AluY SINE Alu -10 301 1 213 39 0 0 chr12 72011220 72011246 -72271243 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 468 306 53 29 chr12 72014461 72014631 -72267858 - MER5B DNA MER1_type -1 177 4 408 292 134 28 chr12 72016740 72016956 -72265533 + MIR SINE MIR 24 262 0 226 373 169 30 chr12 72017058 72017294 -72265195 + L3 LINE CR1 186 454 -1123 369 363 46 30 chr12 72017302 72017564 -72264925 + L3 LINE CR1 413 678 -899 2467 87 0 0 chr12 72021686 72021995 -72260494 + AluSc SINE Alu 1 309 0 275 298 158 9 chr12 72022677 72022791 -72259698 + MIR SINE MIR 120 250 -12 468 332 37 50 chr12 72022872 72023107 -72259382 - MIR SINE MIR -7 255 16 543 257 117 28 chr12 72025169 72025383 -72257106 - L2 LINE L2 -1 3312 3080 * 1403 248 236 16 chr12 72025381 72026054 -72256435 - L2 LINE L2 -814 2500 1680 237 291 91 18 chr12 72026676 72026786 -72255703 - L1ME LINE L1 -294 5827 5710 196 123 0 53 chr12 72026882 72026939 -72255550 + (CAT)n Simple_repeat Simple_repeat 2 55 0 236 102 0 85 chr12 72028853 72028878 -72253611 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 -27 1818 152 29 0 chr12 72028878 72029154 -72253335 + AluJb SINE Alu 3 286 -26 236 102 0 85 chr12 72029154 72029187 -72253302 + (CAAAAA)n Simple_repeat Simple_repeat 28 55 0 2082 139 0 0 chr12 72029240 72029543 -72252946 + AluSx SINE Alu 2 304 -8 21 57 0 0 chr12 72030557 72030592 -72251897 + AT_rich Low_complexity Low_complexity 1 35 0 185 243 0 0 chr12 72031597 72031634 -72250855 + L3 LINE CR1 1540 1576 -1 22 0 0 0 chr12 72031816 72031838 -72250651 + AT_rich Low_complexity Low_complexity 1 22 0 376 337 96 16 chr12 72031974 72032161 -72250328 + MIR SINE MIR 49 250 -12 2435 84 3 0 chr12 72032190 72032501 -72249988 - AluSp SINE Alu -1 312 1 744 194 16 0 chr12 72033652 72033781 -72248708 - FLAM_A SINE Alu -2 131 1 1855 120 21 18 chr12 72033806 72034089 -72248400 + AluSx SINE Alu 1 284 -28 1515 119 49 88 chr12 72034192 72034520 -72247969 + MER46B DNA MER2_type 47 236 0 2065 165 6 0 chr12 72034883 72035217 -72247272 - MER1B DNA MER1_type 0 337 2 1945 150 3 3 chr12 72035451 72035745 -72246744 - AluSx SINE Alu -18 294 1 1535 171 44 11 chr12 72036305 72036579 -72245910 + AluJb SINE Alu 12 294 -18 1159 156 0 0 chr12 72036589 72036769 -72245720 + AluSp SINE Alu 132 311 -2 552 259 57 43 chr12 72036806 72037088 -72245401 + L1ME2 LINE L1 2176 2461 -3685 453 195 31 62 chr12 72037093 72037221 -72245268 + MER31B LTR ERV1 1 124 -342 * 980 200 28 19 chr12 72037208 72037423 -72245066 + MER31B LTR ERV1 250 466 0 1325 217 127 43 chr12 72037429 72037549 -72244940 + L1ME2 LINE L1 2469 2578 -3568 1790 144 31 0 chr12 72037549 72037840 -72244649 + AluSx SINE Alu 1 300 -12 1325 217 127 43 chr12 72037840 72038248 -72244241 + L1ME2 LINE L1 2578 3041 -3105 360 279 85 42 chr12 72038258 72038423 -72244066 + L1ME2 LINE L1 3141 3312 -2834 574 259 18 40 chr12 72038483 72038707 -72243782 + L1ME2 LINE L1 4510 4728 -1418 746 167 210 48 chr12 72038732 72038918 -72243571 + MER20 DNA MER1_type 4 219 0 1158 203 53 74 chr12 72038936 72039354 -72243135 + L1ME2 LINE L1 4769 5177 -969 1674 226 143 17 chr12 72039368 72039663 -72242826 + L1ME2 LINE L1 5330 5586 -578 2221 92 0 10 chr12 72039663 72039977 -72242512 + AluY SINE Alu 1 311 0 1674 226 143 17 chr12 72039977 72040285 -72242204 + L1ME2 LINE L1 5586 6002 -162 318 327 59 39 chr12 72040471 72040725 -72241764 - L1M4 LINE L1 -1431 4715 4457 242 194 0 45 chr12 72041207 72041362 -72241127 + (TG)n Simple_repeat Simple_repeat 2 149 0 2160 109 3 0 chr12 72042457 72042751 -72239738 - AluSx SINE Alu -13 299 5 653 141 13 2 chr12 72043365 72043610 -72238879 + AluJ SINE Alu 1 294 -18 22 80 0 0 chr12 72044152 72044202 -72238287 + AT_rich Low_complexity Low_complexity 1 50 0 1373 104 0 5 chr12 72044701 72044893 -72237596 - AluSx SINE Alu -5 305 115 55 29 0 0 chr12 72044903 72044972 -72237517 + AT_rich Low_complexity Low_complexity 1 69 0 735 145 81 0 chr12 72044974 72045098 -72237391 - AluSx SINE Alu -179 134 1 281 56 0 0 chr12 72045809 72045845 -72236644 - MADE1 DNA Mariner -44 36 1 22 35 0 0 chr12 72046854 72046883 -72235606 + AT_rich Low_complexity Low_complexity 1 29 0 359 340 0 10 chr12 72047025 72047128 -72235361 - L2 LINE L2 -22 3250 3149 2099 119 3 3 chr12 72047238 72047531 -72234958 + AluSx SINE Alu 1 293 -19 1755 130 23 68 chr12 72047609 72047916 -72234573 + AluSg SINE Alu 1 293 -17 433 287 57 111 chr12 72047938 72048257 -72234232 - L2 LINE L2 -465 2849 2557 2581 228 62 5 chr12 72048257 72048875 -72233614 - MER82 DNA MER2_type 0 653 1 433 287 57 111 chr12 72048875 72048977 -72233512 - L2 LINE L2 -757 2557 2451 1045 252 95 10 chr12 72049226 72049675 -72232814 + MER90 LTR ERV1 1 527 -48 192 225 0 56 chr12 72049866 72049937 -72232552 + L3 LINE CR1 1329 1395 -182 200 269 141 13 chr12 72050192 72050270 -72232219 - L2 LINE L2 0 3272 3185 2147 111 10 0 chr12 72050515 72050812 -72231677 - AluSx SINE Alu -12 300 1 226 105 53 0 chr12 72051176 72051214 -72231275 + MIR3 SINE MIR 161 200 -8 383 265 109 22 chr12 72051976 72052147 -72230342 + MIR3 SINE MIR 2 187 -68 1859 151 23 10 chr12 72052280 72052585 -72229904 + AluJb SINE Alu 1 309 -3 1916 115 17 3 chr12 72053069 72053356 -72229133 + AluSc SINE Alu 5 295 -14 186 333 97 53 chr12 72053690 72053804 -72228685 - MIR SINE MIR -72 136 18 195 42 0 0 chr12 72055256 72055280 -72227209 + (T)n Simple_repeat Simple_repeat 1 24 0 489 34 0 0 chr12 72056377 72056436 -72226053 + (CCG)n Simple_repeat Simple_repeat 2 60 0 2153 92 7 0 chr12 72058175 72058457 -72224032 + AluSg SINE Alu 1 284 -26 243 0 0 0 chr12 72058629 72058656 -72223833 + (CA)n Simple_repeat Simple_repeat 2 28 0 357 293 88 14 chr12 72058820 72058967 -72223522 + MIR SINE MIR 32 189 -73 550 101 0 0 chr12 72058967 72059046 -72223443 - AluS SINE Alu -233 79 1 371 77 0 19 chr12 72059048 72059100 -72223389 + AluSq/x SINE Alu 93 143 -159 180 241 0 0 chr12 72059315 72059373 -72223116 + GA-rich Low_complexity Low_complexity 2 59 0 2119 117 7 3 chr12 72060521 72060820 -72221669 + AluSq SINE Alu 1 300 -13 1769 162 0 23 chr12 72062081 72062384 -72220105 - AluJb SINE Alu -16 296 1 369 214 43 50 chr12 72062671 72062811 -72219678 - LTR38B LTR ERV1 -468 142 4 272 234 16 0 chr12 72063292 72063356 -72219133 - MER49 LTR ERV1 -171 752 688 399 214 111 0 chr12 72063401 72063518 -72218971 - LTR38B-int LTR ERV1 -214 6117 5988 4659 215 100 38 chr12 72063605 72065049 -72217440 - MER83A-int LTR ERV1 -341 6257 4905 1764 179 0 3 chr12 72065049 72065363 -72217126 + AluJb SINE Alu 1 313 0 4659 215 100 38 chr12 72065363 72066075 -72216414 - MER83A-int LTR ERV1 -1693 4905 4239 326 23 23 0 chr12 72066075 72066118 -72216371 + (TA)n Simple_repeat Simple_repeat 2 45 0 1472 215 3 0 chr12 72066118 72066430 -72216059 - AluSp SINE Alu 0 313 1 4659 215 100 38 chr12 72066430 72066479 -72216010 - MER83A-int LTR ERV1 -2358 4240 3476 21 0 0 0 chr12 72066479 72066500 -72215989 + AT_rich Low_complexity Low_complexity 1 21 0 2135 112 7 0 chr12 72066541 72066827 -72215662 - AluSg SINE Alu -22 288 1 3333 213 64 32 chr12 72066881 72067450 -72215039 - LTR57-int LTR ERVL -3750 1593 980 1796 174 3 3 chr12 72067450 72067744 -72214745 - AluJb SINE Alu -18 294 1 3333 213 64 32 chr12 72067744 72068129 -72214360 - LTR57-int LTR ERVL -4363 980 609 766 133 84 30 chr12 72068062 72068228 -72214261 - MER83A-int LTR ERV1 -2353 1932 1758 * 21539 57 3 8 chr12 72068328 72071178 -72211311 - L1P LINE L1 -792 5354 2517 229 250 0 36 chr12 72071178 72071234 -72211255 - L2 LINE L2 -14 3299 3246 1315 277 34 15 chr12 72073881 72074292 -72208197 + LTR16A LTR ERVL 1 419 -31 1247 241 31 95 chr12 72074415 72074971 -72207518 + MLT2B1 LTR ERVL 1 520 0 2326 166 13 5 chr12 72075411 72075802 -72206687 - MSTD LTR MaLR 0 396 3 23 0 0 0 chr12 72077806 72077829 -72204660 + AT_rich Low_complexity Low_complexity 1 23 0 2402 135 5 16 chr12 72078210 72078589 -72203900 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr12 72079140 72079166 -72203323 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr12 72079595 72079620 -72202869 + AT_rich Low_complexity Low_complexity 1 25 0 289 269 64 21 chr12 72081028 72081169 -72201320 + MLT1J LTR MaLR 1 147 -364 1020 243 9 0 chr12 72081293 72081511 -72200978 - MER58A DNA MER1_type 0 224 5 1916 164 7 0 chr12 72082133 72082432 -72200057 + AluJo SINE Alu 3 303 -9 412 311 37 19 chr12 72082907 72083068 -72199421 + MLT1I LTR MaLR 228 391 -18 472 306 65 20 chr12 72083740 72084074 -72198415 + MLT1J2 LTR MaLR 66 450 0 257 253 149 35 chr12 72084882 72084969 -72197520 + L2 LINE L2 3181 3277 -36 1588 187 3 34 chr12 72085597 72085918 -72196571 - AluJo SINE Alu -1 311 1 921 198 39 0 chr12 72086160 72086342 -72196147 + MER5A DNA MER1_type 1 189 0 188 294 176 0 chr12 72087322 72087390 -72195099 - L2 LINE L2 -4 3309 3230 408 246 37 88 chr12 72087431 72087646 -72194843 - MIR SINE MIR -12 250 47 411 282 55 49 chr12 72088341 72088504 -72193985 - L3 LINE CR1 -340 1237 1074 198 285 54 54 chr12 72088988 72089118 -72193371 - L3b LINE CR1 -274 1309 1180 2290 94 3 0 chr12 72090145 72090442 -72192047 - AluY SINE Alu -13 298 1 341 310 110 2 chr12 72090670 72090908 -72191581 - L1ME3A LINE L1 -345 5825 5549 2365 122 39 23 chr12 72090908 72091292 -72191197 + MER49 LTR ERV1 6 395 -528 823 212 6 6 chr12 72091297 72091467 -72191022 + FRAM SINE Alu 4 173 -3 3066 169 4 24 chr12 72091487 72091993 -72190496 + MER49 LTR ERV1 384 880 -43 1623 171 19 26 chr12 72091993 72092303 -72190186 + AluJo SINE Alu 1 308 -4 3066 169 4 24 chr12 72092303 72092347 -72190142 + MER49 LTR ERV1 880 923 0 257 317 111 5 chr12 72092352 72092566 -72189923 - L1ME LINE L1 -386 5784 5536 622 275 172 19 chr12 72092617 72092879 -72189610 + LTR67 LTR ERVL 2 303 -254 793 287 28 8 chr12 72093032 72093283 -72189206 + MIR SINE MIR 1 256 -6 240 258 45 11 chr12 72093365 72093454 -72189035 - L1ME LINE L1 -2337 5471 5380 1235 93 50 0 chr12 72093542 72093724 -72188765 - L1PA7 LINE L1 -4 6150 5960 1212 33 0 7 chr12 72093725 72093875 -72188614 + L1PA7 LINE L1 5799 5947 -207 674 268 77 3 chr12 72093877 72094176 -72188313 - L1ME LINE L1 -814 5332 5012 21 36 0 0 chr12 72094205 72094233 -72188256 + AT_rich Low_complexity Low_complexity 1 28 0 2262 106 0 7 chr12 72094320 72094623 -72187866 + AluSx SINE Alu 1 301 -11 202 340 20 54 chr12 72095391 72095538 -72186951 + MER5A DNA MER1_type 10 151 -38 344 94 0 0 chr12 72096007 72096060 -72186429 + L1MB7 LINE L1 6122 6174 -10 301 367 8 19 chr12 72096092 72096356 -72186133 + L1MEc LINE L1 1102 1362 -5034 1389 134 4 0 chr12 72096358 72096589 -72185900 + L1MA2 LINE L1 6063 6294 -10 188 284 34 68 chr12 72097083 72097171 -72185318 + MIR SINE MIR 11 95 -167 186 43 0 0 chr12 72097188 72097211 -72185278 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 23 33 0 0 chr12 72097289 72097319 -72185170 + AT_rich Low_complexity Low_complexity 1 30 0 186 207 0 0 chr12 72098195 72098253 -72184236 + (TA)n Simple_repeat Simple_repeat 2 59 0 233 163 20 0 chr12 72098276 72098325 -72184164 + (TA)n Simple_repeat Simple_repeat 1 50 0 1703 154 4 7 chr12 72098532 72098804 -72183685 - AluJb SINE Alu -41 271 1 2169 244 71 31 chr12 72099521 72099558 -72182931 + L1ME3A LINE L1 5423 5457 -713 2311 231 32 37 chr12 72099558 72100154 -72182335 + MLT1E LTR MaLR 1 593 0 2169 244 71 31 chr12 72100154 72100300 -72182189 + L1ME3A LINE L1 5457 5596 -574 240 35 0 0 chr12 72100300 72100329 -72182160 + (CA)n Simple_repeat Simple_repeat 2 30 0 4777 156 30 26 chr12 72100330 72100957 -72181532 - MER6 DNA MER2_type -1 864 241 363 44 0 0 chr12 72100957 72101002 -72181487 + (TC)n Simple_repeat Simple_repeat 1 45 0 315 0 0 0 chr12 72101001 72101036 -72181453 + (CA)n Simple_repeat Simple_repeat 1 35 0 * 4777 156 30 26 chr12 72101002 72101218 -72181271 - MER6 DNA MER2_type -624 241 48 2032 121 0 0 chr12 72101218 72101490 -72180999 + AluSx SINE Alu 19 290 -22 4777 156 30 26 chr12 72101490 72101538 -72180951 - MER6 DNA MER2_type -817 48 2 306 0 0 0 chr12 72101539 72101573 -72180916 + (TG)n Simple_repeat Simple_repeat 2 35 0 2169 244 71 31 chr12 72101573 72102090 -72180399 + L1ME3A LINE L1 5595 6156 -14 2105 111 7 0 chr12 72102103 72102392 -72180097 + AluSx SINE Alu 3 293 -19 303 203 0 0 chr12 72102583 72102647 -72179842 + (TA)n Simple_repeat Simple_repeat 2 65 0 723 199 59 11 chr12 72102656 72102842 -72179647 - L1MC4 LINE L1 -160 7882 7688 * 1555 190 117 8 chr12 72102836 72103230 -72179259 - L1MC4 LINE L1 -933 7109 6673 1531 160 35 123 chr12 72103230 72103630 -72178859 + MLT1A1 LTR MaLR 1 365 0 406 322 9 9 chr12 72104999 72105114 -72177375 + MIR SINE MIR 16 130 -78 387 89 0 0 chr12 72105114 72105170 -72177319 + (CAT)n Simple_repeat Simple_repeat 2 57 0 1123 281 76 49 chr12 72105378 72105851 -72176638 - L2 LINE L2 0 3313 2828 339 310 26 0 chr12 72106212 72106328 -72176161 + MIR3 SINE MIR 69 187 -21 2536 65 0 3 chr12 72107136 72107443 -72175046 - AluY SINE Alu -5 306 1 23 0 0 0 chr12 72107446 72107469 -72175020 + AT_rich Low_complexity Low_complexity 1 23 0 4506 242 50 19 chr12 72107469 72108030 -72174459 - L1MEc LINE L1 -4950 1359 817 2138 96 0 3 chr12 72108030 72108346 -72174143 - AluY SINE Alu 0 315 1 4506 242 50 19 chr12 72108346 72109105 -72173384 - L1MEc LINE L1 -5492 817 55 423 267 83 50 chr12 72109368 72109692 -72172797 + MLT1I LTR MaLR 83 450 0 2714 165 29 61 chr12 72109869 72110426 -72172063 + MER44D DNA MER2_type 2 595 -10 353 337 93 25 chr12 72110531 72110887 -72171602 + L1M4 LINE L1 3787 4166 -1980 27 29 0 0 chr12 72110983 72111017 -72171472 + AT_rich Low_complexity Low_complexity 1 34 0 5632 12 0 0 chr12 72111017 72111656 -72170833 - L1PA2 LINE L1 0 6155 5517 428 0 0 0 chr12 72111656 72111706 -72170783 + L1P1 LINE L1 5431 5480 -675 1097 267 103 30 chr12 72112169 72112596 -72169893 + MLT1G1 LTR MaLR 137 594 -1 2388 54 3 16 chr12 72113006 72113319 -72169170 - L1PA8 LINE L1 -6 6166 5858 541 181 45 218 chr12 72113387 72113458 -72169031 - LTR41 LTR ERVL -7 766 684 1696 158 17 24 chr12 72113458 72113749 -72168740 + AluJo SINE Alu 1 289 -23 541 181 45 218 chr12 72113749 72113864 -72168625 - LTR41 LTR ERVL -89 684 667 2071 116 7 7 chr12 72113864 72114157 -72168332 + AluSx SINE Alu 5 297 -15 541 181 45 218 chr12 72114157 72114322 -72168167 - LTR41 LTR ERVL -106 667 475 915 191 137 16 chr12 72114357 72114613 -72167876 - LTR41 LTR ERVL -486 287 1 23 54 0 0 chr12 72114638 72114675 -72167814 + AT_rich Low_complexity Low_complexity 1 37 0 219 204 0 0 chr12 72114752 72114801 -72167688 + (TA)n Simple_repeat Simple_repeat 1 49 0 1840 135 4 0 chr12 72114824 72115083 -72167406 + AluSg SINE Alu 20 279 -31 21 0 0 0 chr12 72115199 72115220 -72167269 + AT_rich Low_complexity Low_complexity 1 21 0 306 208 132 75 chr12 72116209 72116368 -72166121 + L1ME4a LINE L1 5115 5282 -864 1884 163 0 3 chr12 72116378 72116679 -72165810 + AluJb SINE Alu 11 310 -2 23 97 0 0 chr12 72116729 72116801 -72165688 + AT_rich Low_complexity Low_complexity 1 72 0 256 320 10 0 chr12 72116943 72117046 -72165443 + (TTATG)n Simple_repeat Simple_repeat 2 105 0 377 224 0 38 chr12 72117056 72117174 -72165315 + L1ME4a LINE L1 5701 5805 -316 551 300 108 14 chr12 72117174 72117397 -72165092 + MIR SINE MIR 17 260 -2 253 173 221 24 chr12 72117569 72117696 -72164793 + L1ME4a LINE L1 5968 6119 -2 21 36 0 0 chr12 72118150 72118178 -72164311 + AT_rich Low_complexity Low_complexity 1 28 0 2370 98 0 0 chr12 72118495 72118802 -72163687 - AluSx SINE Alu -1 311 5 249 167 0 37 chr12 72118963 72119017 -72163472 + MADE1 DNA Mariner 29 80 0 424 347 7 0 chr12 72119065 72119215 -72163274 - MLT1J LTR MaLR -95 416 266 22 20 8 0 chr12 72121145 72121216 -72161273 + AT_rich Low_complexity Low_complexity 1 29 0 5042 130 11 7 chr12 72121422 72122255 -72160234 - L1MA4A LINE L1 -8 6295 5460 1769 157 38 0 chr12 72122608 72122901 -72159588 - AluJb SINE Alu -7 305 2 21 0 0 0 chr12 72123091 72123112 -72159377 + AT_rich Low_complexity Low_complexity 1 21 0 326 292 60 30 chr12 72123422 72123655 -72158834 - HAL1 LINE L1 -1038 1469 1230 809 50 0 10 chr12 72124909 72125010 -72157479 - L1P1 LINE L1 -437 5718 5619 2524 17 0 0 chr12 72125010 72125294 -72157195 + L1PA2 LINE L1 5865 6153 -2 186 43 0 0 chr12 72125308 72125331 -72157158 + (A)n Simple_repeat Simple_repeat 1 23 0 350 220 60 30 chr12 72125522 72125622 -72156867 - MIR SINE MIR -73 135 33 436 382 74 14 chr12 72126845 72127141 -72155348 + L3 LINE CR1 787 1100 -477 568 289 34 61 chr12 72127967 72128172 -72154317 + MIR SINE MIR 2 200 -62 873 209 0 28 chr12 72128172 72128349 -72154140 + FAM SINE Alu 4 175 0 568 289 34 61 chr12 72128349 72128406 -72154083 + MIR SINE MIR 200 257 -5 27 29 0 0 chr12 72129037 72129071 -72153418 + AT_rich Low_complexity Low_complexity 1 34 0 25930 64 2 2 chr12 72129431 72134619 -72147870 + L1PA5 LINE L1 953 6139 -15 618 14 0 0 chr12 72134619 72134690 -72147799 + (TA)n Simple_repeat Simple_repeat 2 72 0 1570 125 9 63 chr12 72134990 72135309 -72147180 - THE1B LTR MaLR -62 302 1 10373 121 24 2 chr12 72135309 72136855 -72145634 - THE1B-int LTR MaLR 0 1580 1 1943 161 25 30 chr12 72136855 72137221 -72145268 - THE1B LTR MaLR 0 364 1 1382 161 157 13 chr12 72137221 72137526 -72144963 + MSTA LTR MaLR 80 428 0 9011 153 11 30 chr12 72137528 72139137 -72143352 + MSTA-int LTR MaLR 3 1580 0 1625 178 121 21 chr12 72139137 72139525 -72142964 + MSTA LTR MaLR 1 427 -1 6580 89 3 0 chr12 72139785 72140921 -72141568 + L1PA8 LINE L1 5024 6162 -10 1938 139 7 0 chr12 72141169 72141457 -72141032 - AluSx SINE Alu -22 290 1 377 241 0 0 chr12 72141593 72141672 -72140817 - MER2 DNA MER2_type 0 345 267 1478 81 85 12 chr12 72141927 72142175 -72140314 + MER61A-int LTR ERV1 4949 5214 -3 1901 136 54 21 chr12 72142178 72142510 -72139979 + MER61A LTR ERV1 1 343 0 481 232 50 50 chr12 72142515 72142696 -72139793 - Charlie1a DNA MER1_type -374 1081 901 * 1550 264 51 69 chr12 72142694 72143402 -72139087 - Charlie1a DNA MER1_type -758 697 3 2659 238 24 40 chr12 72144568 72145389 -72137100 - L1MA9 LINE L1 -38 6274 5467 527 171 124 0 chr12 72145396 72145501 -72136988 + AluJb SINE Alu 1 118 -194 1021 179 62 47 chr12 72145501 72145923 -72136566 - MLT2A2 LTR ERVL -4 449 122 796 57 0 0 chr12 72146910 72147015 -72135474 - L1PA5 LINE L1 -1 6153 6049 1396 137 30 4 chr12 72147953 72148215 -72134274 + L1P LINE L1 3794 4062 -2084 785 192 27 0 chr12 72148229 72148375 -72134114 + LOR1a LTR ERV1 348 497 0 400 307 88 0 chr12 72148409 72148601 -72133888 - L1ME LINE L1 -472 5698 5490 1866 199 14 6 chr12 72150140 72150502 -72131987 + MLT1A1 LTR MaLR 1 365 0 273 280 0 0 chr12 72150553 72150646 -72131843 - MER69 DNA AcHobo -8 2518 2426 315 314 38 13 chr12 72150715 72150874 -72131615 + MIR SINE MIR 97 259 -3 23 68 0 0 chr12 72151785 72151829 -72130660 + AT_rich Low_complexity Low_complexity 1 44 0 3676 110 13 11 chr12 72151964 72152517 -72129972 + MER41A LTR ERV1 1 554 0 446 149 96 21 chr12 72152956 72153050 -72129439 + FLAM_C SINE Alu 20 120 -23 2284 113 0 0 chr12 72153133 72153435 -72129054 - AluSx SINE Alu -10 302 1 873 330 92 45 chr12 72153598 72154512 -72127977 + L2 LINE L2 1915 2871 -443 3709 125 91 52 chr12 72154722 72155472 -72127017 - THE1C-int LTR MaLR -798 782 4 1835 161 65 8 chr12 72155475 72155830 -72126659 - THE1C LTR MaLR 0 375 1 919 329 58 24 chr12 72155848 72156316 -72126173 + L1M4b LINE L1 600 1083 -5776 6769 166 48 32 chr12 72156417 72157976 -72124513 + L1P3 LINE L1 557 2269 -4192 278 102 288 0 chr12 72158180 72158239 -72124250 + MADE1 DNA Mariner 1 76 -4 297 0 0 0 chr12 72158366 72158399 -72124090 + (TG)n Simple_repeat Simple_repeat 2 34 0 2225 58 4 0 chr12 72158399 72158675 -72123814 - AluY SINE Alu -34 277 1 688 220 133 20 chr12 72158786 72159086 -72123403 - Charlie1 DNA MER1_type -42 2719 2386 1573 178 74 21 chr12 72159086 72159412 -72123077 + MER61A LTR ERV1 1 343 0 2292 210 55 11 chr12 72159412 72159978 -72122511 + MER61A-int LTR ERV1 1 591 -4626 1533 124 34 0 chr12 72160155 72160422 -72122067 - L1MA2 LINE L1 -310 5994 5719 * 2542 144 56 27 chr12 72160415 72160983 -72121506 - L1M1 LINE L1 -513 5791 5207 2042 141 0 6 chr12 72161102 72161428 -72121061 + L1P3 LINE L1 10 333 -6128 378 102 0 0 chr12 72161444 72161503 -72120986 + L1P3 LINE L1 522 580 -5881 25 0 0 0 chr12 72161890 72161915 -72120574 + AT_rich Low_complexity Low_complexity 1 25 0 545 331 91 57 chr12 72161999 72162246 -72120243 + L2 LINE L2 1269 1506 -1808 2035 109 21 3 chr12 72162246 72162531 -72119958 + AluSx SINE Alu 13 302 -10 545 331 91 57 chr12 72162531 72162712 -72119777 + L2 LINE L2 1506 1723 -1591 1909 221 38 50 chr12 72162712 72163188 -72119301 - MER70A LTR ERVL 0 472 3 545 331 91 57 chr12 72163188 72163307 -72119182 + L2 LINE L2 1723 1836 -1478 300 323 8 8 chr12 72165075 72165205 -72117284 - MER69 DNA AcHobo -2396 130 1 2229 94 0 3 chr12 72165427 72165724 -72116765 - AluSc SINE Alu -13 296 1 8231 79 5 1 chr12 72166247 72167437 -72115052 - L1P LINE L1 -2166 3980 2786 199 113 38 0 chr12 72167470 72167523 -72114966 + (CCCG)n Simple_repeat Simple_repeat 3 57 0 1658 206 15 0 chr12 72168360 72168700 -72113789 - LOR1b LTR ERV1 0 461 117 2030 123 17 13 chr12 72169188 72169490 -72112999 - AluSx SINE Alu -9 303 1 1617 203 3 7 chr12 72169514 72169814 -72112675 - AluJb SINE Alu -13 299 1 2740 151 83 33 chr12 72169941 72170569 -72111920 - Tigger3(Golem) DNA MER2_type 0 3029 2371 2105 237 12 12 chr12 72170701 72171287 -72111202 + L1 LINE L1 4677 5262 -884 1902 139 0 7 chr12 72171821 72172157 -72110332 - AluSq SINE Alu 0 339 6 6532 113 48 20 chr12 72172283 72172425 -72110064 - MER61-int LTR ERV1 -1205 6213 6077 575 112 0 0 chr12 72172425 72172514 -72109975 + AluS SINE Alu 224 312 0 6532 113 48 20 chr12 72172514 72173588 -72108901 - MER61-int LTR ERV1 -1341 6077 2220 201 380 51 15 chr12 72174365 72174502 -72107987 + L2 LINE L2 3160 3301 -12 1294 146 55 32 chr12 72174521 72174741 -72107748 - AluSg/x SINE Alu -16 296 72 354 288 79 45 chr12 72174786 72174963 -72107526 - L1MDb LINE L1 -5702 707 525 181 331 49 35 chr12 72175618 72175760 -72106729 - L2 LINE L2 -1684 1630 1487 25 91 0 0 chr12 72177422 72177477 -72105012 + GC_rich Low_complexity Low_complexity 1 55 0 1722 179 52 3 chr12 72177803 72178133 -72104356 - MER7A DNA MER2_type -2 344 1 241 372 16 0 chr12 72178945 72179066 -72103423 - MIR SINE MIR -3 259 137 237 262 36 4 chr12 72179326 72179519 -72102970 + LTR37B LTR ERV1 200 464 -4 303 274 48 91 chr12 72180042 72180294 -72102195 + L1MDa LINE L1 37 277 -6263 204 216 0 0 chr12 72180317 72180354 -72102135 + GA-rich Low_complexity Low_complexity 2 38 0 2986 179 28 53 chr12 72180485 72181188 -72101301 + LTR1 LTR ERV1 1 686 -99 1799 138 0 8 chr12 72181305 72181566 -72100923 - AluSx SINE Alu -53 259 1 184 360 31 50 chr12 72181824 72181985 -72100504 - L2 LINE L2 -8 3264 3107 1960 128 62 59 chr12 72183213 72183587 -72098902 + THE1C LTR MaLR 1 375 0 800 241 12 6 chr12 72183884 72184054 -72098435 - MER5A DNA MER1_type 0 189 19 300 319 121 0 chr12 72184138 72184254 -72098235 + L2 LINE L2 3143 3272 0 310 127 18 0 chr12 72184409 72184464 -72098025 + Alu SINE Alu 1 56 -245 269 213 40 0 chr12 72184777 72184852 -72097637 + (CCCCG)n Simple_repeat Simple_repeat 5 82 0 256 378 0 6 chr12 72184793 72184974 -72097515 + C-rich Low_complexity Low_complexity 1 179 0 * 419 355 0 6 chr12 72185035 72185204 -72097285 + C-rich Low_complexity Low_complexity 4 171 0 2411 122 33 20 chr12 72185371 72185764 -72096725 - MSTB LTR MaLR -28 398 1 488 301 40 41 chr12 72186528 72186739 -72095750 + MIR SINE MIR 2 210 -52 1319 154 0 36 chr12 72186779 72187029 -72095460 + AluJo SINE Alu 73 314 0 813 324 72 26 chr12 72188722 72189099 -72093390 + MLT1K LTR MaLR 2 395 -193 429 226 61 17 chr12 72189449 72189564 -72092925 - MIR SINE MIR -9 253 134 296 140 0 0 chr12 72189564 72189614 -72092875 - MIR SINE MIR -81 181 132 328 233 0 58 chr12 72189686 72189772 -72092717 + L2 LINE L2 3233 3313 0 412 240 20 10 chr12 72189997 72190097 -72092392 - MIR SINE MIR -136 126 26 1967 103 4 0 chr12 72190364 72190626 -72091863 - AluSc SINE Alu -1 308 46 905 280 154 35 chr12 72191361 72191415 -72091074 - L2 LINE L2 0 3313 3267 2334 92 0 35 chr12 72191415 72191730 -72090759 - AluSx SINE Alu -8 304 1 905 280 154 35 chr12 72191730 72192371 -72090118 - L2 LINE L2 -46 3267 2520 643 219 164 25 chr12 72193652 72193853 -72088636 + MIR SINE MIR 31 259 -3 19991 184 17 17 chr12 72194314 72199450 -72083039 - L1PA13 LINE L1 -3 7598 2471 2950 236 75 11 chr12 72199508 72200269 -72082220 - L1PA13 LINE L1 -5644 1937 1128 2458 150 8 3 chr12 72200269 72200642 -72081847 + THE1C LTR MaLR 1 375 0 3072 76 51 107 chr12 72200642 72201104 -72081385 + THE1C-int LTR MaLR 1 429 -1151 1918 137 23 16 chr12 72201104 72201411 -72081078 + AluSx SINE Alu 1 309 -3 3072 76 51 107 chr12 72201411 72201500 -72080989 + THE1C-int LTR MaLR 429 521 -1059 * 5632 120 2 1 chr12 72201494 72202286 -72080203 + THE1C-int LTR MaLR 788 1580 0 2710 124 8 0 chr12 72202288 72202658 -72079831 + THE1C LTR MaLR 3 375 0 4225 214 39 18 chr12 72202658 72203501 -72078988 - L1PA13 LINE L1 -6719 862 2 2021 164 62 8 chr12 72203505 72203859 -72078630 - Tigger2a DNA MER2_type -61 373 1 261 310 69 37 chr12 72203883 72204128 -72078361 + L1ME4a LINE L1 5689 5941 -180 249 262 0 0 chr12 72204202 72204263 -72078226 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1534 102 28 9 chr12 72204263 72204479 -72078010 - AluSq SINE Alu -93 220 1 250 270 2 0 chr12 72204608 72204671 -72077818 - MER91 DNA MER1_type 0 196 127 2212 152 21 15 chr12 72204914 72205249 -72077240 - MER1B DNA MER1_type 0 337 1 211 282 258 0 chr12 72208053 72208190 -72074299 - MER5C DNA MER1_type -6 183 5 411 278 62 7 chr12 72208277 72208421 -72074068 - L1ME4a LINE L1 -4 6117 5966 845 265 123 59 chr12 72208645 72209287 -72073202 - L1ME4a LINE L1 -299 5822 5141 181 0 0 65 chr12 72209577 72209608 -72072881 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1932 184 153 35 chr12 72209676 72210128 -72072361 + MLT1D LTR MaLR 1 505 0 614 189 8 31 chr12 72210410 72210537 -72071952 + MIR SINE MIR 139 262 0 2373 148 53 15 chr12 72210539 72210584 -72071905 - MLT2D LTR ERVL 0 414 372 477 0 0 0 chr12 72210584 72210637 -72071852 + (TG)n Simple_repeat Simple_repeat 2 54 0 2373 148 53 15 chr12 72210637 72210990 -72071499 - MLT2D LTR ERVL -42 372 1 241 247 68 0 chr12 72210991 72211064 -72071425 - L1ME4a LINE L1 -1975 4171 4094 21 0 0 0 chr12 72211340 72211361 -72071128 + AT_rich Low_complexity Low_complexity 1 21 0 303 242 0 0 chr12 72212562 72212628 -72069861 + MER103 DNA DNA 2 67 -99 676 307 70 4 chr12 72212751 72212992 -72069497 - MIR SINE MIR -1 261 5 384 236 0 0 chr12 72213029 72213101 -72069388 + MER2 DNA MER2_type 8 79 -266 852 247 133 44 chr12 72214065 72214336 -72068153 - MLT1H LTR MaLR 0 549 255 246 235 162 0 chr12 72214343 72214411 -72068078 - MLT1I LTR MaLR -228 181 103 376 216 0 145 chr12 72214801 72214932 -72067557 + MER34 LTR ERV1 1 112 -446 368 191 141 88 chr12 72215185 72215400 -72067089 + MER34 LTR ERV1 373 542 0 342 199 66 35 chr12 72215400 72215515 -72066974 + MLT1L LTR MaLR 386 611 -3 1160 286 20 30 chr12 72215519 72215917 -72066572 - L2 LINE L2 -971 2343 1950 272 367 143 31 chr12 72216027 72216313 -72066176 + L2 LINE L2 2909 3226 -46 294 235 51 71 chr12 72218630 72218728 -72063761 + MIR SINE MIR 117 212 -50 495 237 31 103 chr12 72218801 72218961 -72063528 + MIR SINE MIR 32 175 -87 2075 127 0 3 chr12 72218961 72219326 -72063163 - AluSx SINE Alu 0 364 1 495 237 31 103 chr12 72219326 72219405 -72063084 + MIR SINE MIR 175 258 -4 11973 172 97 91 chr12 72219955 72222010 -72060479 + L1MA1 LINE L1 14 2056 -5509 762 189 23 8 chr12 72222010 72222142 -72060347 + AluJo SINE Alu 2 135 -177 11973 172 97 91 chr12 72222142 72224307 -72058182 + L1MA1 LINE L1 2056 4381 -3184 1415 202 28 15 chr12 72224305 72224632 -72057857 + L1MA1 LINE L1 5550 5880 -1685 * 7016 109 35 3 chr12 72224625 72226022 -72056467 + L1MA1 LINE L1 6280 7721 0 390 42 0 0 chr12 72226486 72226534 -72055955 + (TC)n Simple_repeat Simple_repeat 1 48 0 326 337 127 0 chr12 72226841 72227007 -72055482 + MER117 DNA MER1_type 10 196 -1 368 312 12 23 chr12 72227962 72228135 -72054354 + C-rich Low_complexity Low_complexity 1 171 0 283 360 12 17 chr12 72228171 72228343 -72054146 + C-rich Low_complexity Low_complexity 4 174 0 18812 63 3 7 chr12 72228443 72231527 -72050962 + L1PA6 LINE L1 3040 6139 -15 271 0 0 0 chr12 72231527 72231557 -72050932 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 18812 63 3 7 chr12 72231557 72231573 -72050916 + L1PA6 LINE L1 6139 6154 0 2370 106 3 0 chr12 72231749 72232061 -72050428 + AluSp SINE Alu 1 313 0 375 310 26 0 chr12 72232365 72232481 -72050008 - MIR3 SINE MIR 0 208 90 226 341 11 66 chr12 72233278 72233460 -72049029 - L2 LINE L2 -24 3289 3118 229 212 182 0 chr12 72233505 72233571 -72048918 - MER5C DNA MER1_type 0 324 247 351 260 106 10 chr12 72233688 72233792 -72048697 - MER5C DNA MER1_type -202 122 9 391 309 110 33 chr12 72233797 72234173 -72048316 - L2 LINE L2 -201 3071 2655 1963 143 60 14 chr12 72234173 72234522 -72047967 - MLT1A1 LTR MaLR 0 365 1 391 309 110 33 chr12 72234522 72234598 -72047891 - L2 LINE L2 -617 2655 2586 1782 151 32 4 chr12 72234599 72234877 -72047612 + AluJb SINE Alu 1 286 -26 2088 142 0 0 chr12 72234963 72235266 -72047223 + AluSx SINE Alu 2 304 -8 21 57 0 0 chr12 72236281 72236316 -72046173 + AT_rich Low_complexity Low_complexity 1 35 0 568 207 9 17 chr12 72237314 72237430 -72045059 - FLAM_C SINE Alu -19 124 10 28 29 0 0 chr12 72237828 72237863 -72044626 + AT_rich Low_complexity Low_complexity 1 35 0 1997 127 35 0 chr12 72237866 72238150 -72044339 + AluSp SINE Alu 1 294 -19 21 0 0 0 chr12 72238974 72238995 -72043494 + AT_rich Low_complexity Low_complexity 1 21 0 2315 89 0 10 chr12 72239519 72239823 -72042666 - AluSx SINE Alu -11 301 1 750 194 16 0 chr12 72240974 72241103 -72041386 - FLAM_A SINE Alu -2 131 1 1852 124 21 18 chr12 72241128 72241411 -72041078 + AluSx SINE Alu 1 284 -28 1413 119 49 88 chr12 72241514 72241842 -72040647 + MER46B DNA MER2_type 47 236 0 2101 162 6 0 chr12 72242205 72242539 -72039950 - MER1B DNA MER1_type 0 337 2 2049 143 3 0 chr12 72242773 72243066 -72039423 - AluSx SINE Alu -18 294 1 1545 171 44 11 chr12 72243626 72243900 -72038589 + AluJb SINE Alu 12 294 -18 1118 153 17 0 chr12 72243910 72244087 -72038402 + AluSp SINE Alu 132 311 -2 490 259 57 43 chr12 72244124 72244406 -72038083 + L1ME2 LINE L1 2176 2461 -3685 437 188 31 62 chr12 72244411 72244539 -72037950 + MER31B LTR ERV1 1 124 -342 * 930 204 27 18 chr12 72244521 72244741 -72037748 + MER31B LTR ERV1 245 466 0 1168 221 130 39 chr12 72244747 72244867 -72037622 + L1ME2 LINE L1 2469 2577 -3569 1816 144 31 0 chr12 72244867 72245158 -72037331 + AluSx SINE Alu 1 300 -12 1168 221 130 39 chr12 72245158 72245554 -72036935 + L1ME2 LINE L1 2577 3032 -3114 360 302 77 28 chr12 72245564 72245746 -72036743 + L1ME2 LINE L1 3122 3312 -2834 515 259 18 40 chr12 72245806 72246030 -72036459 + L1ME2 LINE L1 4510 4728 -1418 679 167 210 48 chr12 72246055 72246241 -72036248 + MER20 DNA MER1_type 4 219 0 1054 203 50 74 chr12 72246259 72246678 -72035811 + L1ME2 LINE L1 4769 5177 -969 1468 229 146 17 chr12 72246692 72246986 -72035503 + L1ME2 LINE L1 5330 5585 -579 2184 93 3 10 chr12 72246986 72247299 -72035190 + AluY SINE Alu 1 311 0 1468 229 146 17 chr12 72247299 72247607 -72034882 + L1ME2 LINE L1 5585 6002 -162 305 331 59 39 chr12 72247793 72248047 -72034442 - L1M4 LINE L1 -1431 4715 4457 196 194 0 28 chr12 72248529 72248601 -72033888 + (TG)n Simple_repeat Simple_repeat 2 71 0 2159 109 3 0 chr12 72249696 72249989 -72032500 - AluSx SINE Alu -14 298 5 659 141 13 2 chr12 72250603 72250848 -72031641 + AluJ SINE Alu 1 294 -18 22 80 0 0 chr12 72251390 72251440 -72031049 + AT_rich Low_complexity Low_complexity 1 50 0 1388 104 0 5 chr12 72251939 72252131 -72030358 - AluSx SINE Alu -5 307 117 55 29 0 0 chr12 72252141 72252210 -72030279 + AT_rich Low_complexity Low_complexity 1 69 0 747 145 81 0 chr12 72252212 72252336 -72030153 - AluSx SINE Alu -178 134 1 269 56 0 0 chr12 72253047 72253083 -72029406 - MADE1 DNA Mariner -44 36 1 21 36 0 0 chr12 72254092 72254120 -72028369 + AT_rich Low_complexity Low_complexity 1 28 0 359 340 0 10 chr12 72254262 72254365 -72028124 - L2 LINE L2 -22 3250 3149 2117 119 3 3 chr12 72254475 72254768 -72027721 + AluSx SINE Alu 1 293 -19 1766 130 23 68 chr12 72254846 72255153 -72027336 + AluSg SINE Alu 1 293 -17 457 269 65 107 chr12 72255175 72255484 -72027005 - L2 LINE L2 -465 2849 2554 2496 235 60 3 chr12 72255494 72256112 -72026377 - MER82 DNA MER2_type 0 653 1 969 250 95 10 chr12 72256463 72256912 -72025577 + MER90 LTR ERV1 1 527 -48 194 225 0 56 chr12 72257103 72257174 -72025315 + L3 LINE CR1 1329 1395 -182 201 269 141 13 chr12 72257429 72257507 -72024982 - L2 LINE L2 0 3272 3185 2140 110 10 0 chr12 72257752 72258044 -72024445 - AluSx SINE Alu -11 301 7 227 105 53 0 chr12 72258414 72258452 -72024037 + MIR3 SINE MIR 161 200 -8 384 264 109 22 chr12 72259215 72259386 -72023103 + MIR3 SINE MIR 2 187 -68 1883 151 23 10 chr12 72259519 72259824 -72022665 + AluJb SINE Alu 1 309 -3 1917 120 17 3 chr12 72260308 72260599 -72021890 + AluSc SINE Alu 5 299 -10 182 333 97 53 chr12 72260933 72261047 -72021442 - MIR SINE MIR -72 136 18 222 37 0 0 chr12 72262499 72262526 -72019963 + (T)n Simple_repeat Simple_repeat 1 27 0 219 69 0 0 chr12 72263623 72263652 -72018837 + (CCG)n Simple_repeat Simple_repeat 2 30 0 2152 92 7 0 chr12 72265391 72265673 -72016816 + AluSg SINE Alu 1 284 -26 225 0 0 0 chr12 72265845 72265870 -72016619 + (CA)n Simple_repeat Simple_repeat 2 26 0 562 101 0 0 chr12 72266176 72266255 -72016234 - AluS SINE Alu -234 79 1 352 77 0 19 chr12 72266257 72266309 -72016180 + AluSc SINE Alu 91 141 -158 180 241 0 0 chr12 72266524 72266582 -72015907 + GA-rich Low_complexity Low_complexity 2 59 0 2146 117 7 3 chr12 72267725 72268024 -72014465 + AluSq SINE Alu 1 300 -13 1792 164 0 23 chr12 72269257 72269562 -72012927 - AluJb SINE Alu -14 298 1 348 197 61 45 chr12 72269855 72269987 -72012502 - LTR38B LTR ERV1 -473 137 4 386 204 121 19 chr12 72270537 72270694 -72011795 - LTR38B-int LTR ERV1 -171 6160 5988 4250 215 99 42 chr12 72270781 72272225 -72010264 - MER83A-int LTR ERV1 -341 6257 4897 1769 180 0 3 chr12 72272225 72272538 -72009951 + AluJb SINE Alu 1 312 0 4250 215 99 42 chr12 72272538 72273247 -72009242 - MER83A-int LTR ERV1 -1701 4897 4230 326 23 23 0 chr12 72273247 72273290 -72009199 + (TA)n Simple_repeat Simple_repeat 2 45 0 2337 101 3 0 chr12 72273290 72273588 -72008901 - AluSp SINE Alu -14 299 1 4250 215 99 42 chr12 72273588 72273697 -72008792 - MER83A-int LTR ERV1 -2367 4231 3433 2157 108 7 0 chr12 72273699 72273985 -72008504 - AluSg SINE Alu -22 288 1 3025 214 67 33 chr12 72274039 72274604 -72007885 - LTR57-int LTR ERVL -3750 1593 980 1820 174 3 3 chr12 72274604 72274898 -72007591 - AluJb SINE Alu -18 294 1 3025 214 67 33 chr12 72274898 72275284 -72007205 - LTR57-int LTR ERVL -4363 980 609 * 3221 150 26 19 chr12 72275216 72275796 -72006693 - MER83A-int LTR ERV1 -2353 1932 1349 821 241 40 32 chr12 72276198 72276476 -72006013 - MER83A-int LTR ERV1 -1412 374 95 2489 48 7 3 chr12 72276794 72277104 -72005385 - AluY SINE Alu 0 311 1 269 263 44 53 chr12 72277507 72277621 -72004868 - LTR38B LTR ERV1 -492 118 6 871 130 0 8 chr12 72277621 72277744 -72004745 - AluJb SINE Alu -190 122 1 1810 119 68 7 chr12 72278210 72278503 -72003986 - AluSx SINE Alu 0 312 2 760 50 0 10 chr12 72279538 72279637 -72002852 - AluJb SINE Alu -183 129 32 497 211 18 60 chr12 72279667 72279833 -72002656 + L1ME1 LINE L1 5841 5999 -167 573 209 8 0 chr12 72279896 72280030 -72002459 + L1MA10 LINE L1 6196 6330 -4 251 269 51 13 chr12 72280389 72280467 -72002022 + L2 LINE L2 2265 2345 -969 400 264 264 21 chr12 72280478 72280671 -72001818 + MIR SINE MIR 13 252 -10 495 282 35 18 chr12 72280964 72281134 -72001355 + MIR SINE MIR 75 247 -15 1848 127 37 10 chr12 72281182 72281481 -72001008 - AluJb SINE Alu -5 307 1 181 290 26 97 chr12 72281510 72281665 -72000824 - L3 LINE CR1 -584 993 850 279 279 294 15 chr12 72281677 72281813 -72000676 - MER5B DNA MER1_type -2 176 3 232 100 20 20 chr12 72281818 72281868 -72000621 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 384 332 188 54 chr12 72281889 72282002 -72000487 - L3 LINE CR1 -800 777 680 183 42 0 0 chr12 72282002 72282026 -72000463 + (GA)n Simple_repeat Simple_repeat 2 25 0 384 332 188 54 chr12 72282026 72282578 -71999911 - L3 LINE CR1 -897 680 23 1440 203 33 27 chr12 72283086 72283421 -71999068 - MER58B DNA MER1_type 0 341 5 450 0 0 0 chr12 72283648 72283698 -71998791 + (TA)n Simple_repeat Simple_repeat 2 51 0 5297 37 0 0 chr12 72283698 72284322 -71998167 - L1PA5 LINE L1 -15 6139 5516 14791 47 0 0 chr12 72284322 72286233 -71996256 + L1P2 LINE L1 3560 5469 -685 24 32 0 0 chr12 72286578 72286609 -71995880 + AT_rich Low_complexity Low_complexity 1 31 0 1878 138 0 4 chr12 72286653 72286929 -71995560 + AluSx SINE Alu 1 275 -37 22 35 0 0 chr12 72287120 72287149 -71995340 + AT_rich Low_complexity Low_complexity 1 29 0 1174 171 0 32 chr12 72287678 72287895 -71994594 - AluJb SINE Alu -19 293 84 216 0 0 0 chr12 72288498 72288522 -71993967 + (TG)n Simple_repeat Simple_repeat 1 24 0 322 256 0 0 chr12 72288551 72288629 -71993860 + Charlie7 DNA MER1_type 24 101 -2511 277 226 13 71 chr12 72288621 72288776 -71993713 + Charlie7 DNA MER1_type 2462 2607 -5 * 676 197 0 8 chr12 72290684 72290801 -71991688 + FLAM_C SINE Alu 3 118 -15 240 333 21 11 chr12 72291120 72291213 -71991276 + MIR SINE MIR 149 242 -20 397 255 99 5 chr12 72291848 72292040 -71990449 + L1M4 LINE L1 3544 3753 -2393 351 268 181 22 chr12 72292040 72292178 -71990311 + L2 LINE L2 2542 2701 -613 408 297 173 12 chr12 72292207 72292456 -71990033 + L2 LINE L2 2992 3280 -33 628 289 86 5 chr12 72292741 72292938 -71989551 + MIR SINE MIR 2 214 -48 35884 65 6 3 chr12 72293508 72299040 -71983449 - L1PA5 LINE L1 0 6154 604 790 286 35 4 chr12 72299784 72300011 -71982478 + MIR SINE MIR 8 241 -21 405 282 43 74 chr12 72300588 72300974 -71981515 + L1MEd LINE L1 758 1154 -5156 1798 191 18 3 chr12 72300974 72301315 -71981174 + MER7A DNA MER2_type 2 345 -1 405 282 43 74 chr12 72301315 72301721 -71980768 + L1MEd LINE L1 1154 1558 -4752 692 252 65 0 chr12 72301721 72301876 -71980613 - MER96 DNA MER1_type? 0 175 11 2613 107 18 10 chr12 72301905 72302299 -71980190 - L1PA14 LINE L1 0 6161 5765 728 313 57 32 chr12 72302509 72303416 -71979073 + L1ME3A LINE L1 689 1666 -4644 2246 104 0 3 chr12 72303508 72303805 -71978684 - AluSx SINE Alu -16 296 1 782 245 83 74 chr12 72304109 72304460 -71978029 - LTR41 LTR ERVL -13 760 407 353 227 114 45 chr12 72304473 72304605 -71977884 - LTR41 LTR ERVL -611 162 22 2277 162 38 24 chr12 72304605 72305030 -71977459 + MSTB1 LTR MaLR 1 431 -1 630 269 104 16 chr12 72305060 72305502 -71976987 + L1ME3A LINE L1 2116 2596 -3533 357 317 28 6 chr12 72305500 72305680 -71976809 + L1ME3A LINE L1 4752 4935 -1194 * 824 266 110 44 chr12 72305682 72306458 -71976031 + L1ME3A LINE L1 5118 5945 -208 481 265 53 26 chr12 72306617 72306806 -71975683 + L1ME3A LINE L1 5945 6138 -15 227 302 62 31 chr12 72306965 72307061 -71975428 + L2 LINE L2 3203 3301 -12 501 220 213 7 chr12 72307829 72307979 -71974510 - MER112 DNA MER1_type -10 250 70 202 219 0 0 chr12 72307984 72308025 -71974464 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 258 323 21 11 chr12 72309465 72309558 -71972931 - MIR SINE MIR -20 242 149 676 197 0 8 chr12 72309876 72309993 -71972496 - FLAM_C SINE Alu -15 118 3 277 226 13 71 chr12 72311901 72312056 -71970433 - Charlie7 DNA MER1_type -5 2607 2462 * 322 256 0 0 chr12 72312048 72312126 -71970363 - Charlie7 DNA MER1_type -2511 101 24 180 0 0 0 chr12 72312155 72312175 -71970314 + (CA)n Simple_repeat Simple_repeat 1 20 0 1174 171 0 32 chr12 72312778 72312995 -71969494 + AluJb SINE Alu 84 293 -19 22 35 0 0 chr12 72313524 72313553 -71968936 + AT_rich Low_complexity Low_complexity 1 29 0 1878 138 0 4 chr12 72313744 72314020 -71968469 - AluSx SINE Alu -37 275 1 24 32 0 0 chr12 72314064 72314095 -71968394 + AT_rich Low_complexity Low_complexity 1 31 0 14802 47 0 0 chr12 72314440 72316352 -71966137 - L1P2 LINE L1 -685 5469 3559 5124 55 0 0 chr12 72316352 72316990 -71965499 + L1PA5 LINE L1 5516 6154 0 628 289 86 5 chr12 72317556 72317753 -71964736 - MIR SINE MIR -48 214 2 408 297 173 12 chr12 72318038 72318287 -71964202 - L2 LINE L2 -33 3280 2992 351 268 181 22 chr12 72318316 72318454 -71964035 - L2 LINE L2 -613 2701 2542 502 264 77 65 chr12 72318454 72318856 -71963633 - L1M4 LINE L1 -2393 3753 3347 415 299 91 13 chr12 72319219 72319527 -71962962 - L1MC4a LINE L1 -1773 6035 5704 274 384 12 12 chr12 72320135 72320307 -71962182 + HERV16 LTR ERVL 23 194 -4802 580 248 123 4 chr12 72320538 72320903 -71961586 + LTR50 LTR ERVL 84 684 -51 735 318 90 50 chr12 72320956 72321778 -71960711 + HERV16 LTR ERVL 1121 1975 -3789 2674 345 41 38 chr12 72321801 72322870 -71959619 + HERV16 LTR ERVL 407 1471 -4293 438 222 63 0 chr12 72322870 72322996 -71959493 - MER94 DNA DNA 0 134 1 2674 345 41 38 chr12 72322996 72324513 -71957976 + HERV16 LTR ERVL 1471 3186 -2578 507 246 52 5 chr12 72324516 72324707 -71957782 - L1M4 LINE L1 -1679 4467 4268 * 1908 274 58 8 chr12 72324705 72325310 -71957179 - L1MEc LINE L1 -5585 811 177 544 299 48 68 chr12 72326649 72327000 -71955489 + L2 LINE L2 2928 3271 -42 857 203 87 34 chr12 72327212 72327419 -71955070 - MER20 DNA MER1_type 0 219 2 329 293 32 8 chr12 72327690 72327813 -71954676 - L1ME4a LINE L1 -268 5853 5728 383 294 71 81 chr12 72328059 72328222 -71954267 - L1ME4a LINE L1 -801 5345 5182 2362 158 42 0 chr12 72328222 72328626 -71953863 + MSTB LTR MaLR 4 424 -2 383 294 71 81 chr12 72328626 72328941 -71953548 - L1ME4a LINE L1 -964 5182 4872 2618 221 109 43 chr12 72329044 72330582 -71951907 - L1ME1 LINE L1 -5 6161 4525 7901 130 9 13 chr12 72330593 72331860 -71950629 - Tigger4(Zombi) DNA MER2_type -6 2725 1463 1102 150 0 6 chr12 72331854 72332021 -71950468 - Tigger4(Zombi) DNA MER2_type -2565 166 1 * 324 146 18 0 chr12 72331973 72332028 -71950461 + MER46A DNA MER2_type 97 152 -84 * 1322 216 55 46 chr12 72332028 72332464 -71950025 - L1ME1 LINE L1 -1635 4511 4072 785 239 34 34 chr12 72332530 72332739 -71949750 - MIR SINE MIR -14 248 40 407 309 36 41 chr12 72333376 72333570 -71948919 + MIR SINE MIR 28 220 -42 594 274 205 5 chr12 72335018 72335233 -71947256 - MIR SINE MIR 0 262 5 2441 144 61 14 chr12 72335845 72336288 -71946201 + MLT1C LTR MaLR 1 464 -3 413 297 39 32 chr12 72336384 72336539 -71945950 - MIR SINE MIR -50 212 57 588 190 15 7 chr12 72336815 72336952 -71945537 - MER103 DNA DNA -22 144 7 394 242 30 42 chr12 72337545 72337710 -71944779 - MLT1A2 LTR MaLR -207 167 5 25 0 0 0 chr12 72337853 72337878 -71944611 + AT_rich Low_complexity Low_complexity 1 25 0 2894 164 23 4 chr12 72337882 72338414 -71944075 - L1MB1 LINE L1 -16 6152 5611 276 242 0 16 chr12 72339095 72339157 -71943332 - MIR SINE MIR -130 78 18 376 229 175 33 chr12 72340181 72340364 -71942125 + L3 LINE CR1 1256 1464 -113 1176 120 111 14 chr12 72340875 72341083 -71941406 + MER30 DNA MER1_type 1 228 -2 27 29 0 0 chr12 72341919 72341953 -71940536 + AT_rich Low_complexity Low_complexity 1 34 0 183 80 0 0 chr12 72342145 72342170 -71940319 + (CAT)n Simple_repeat Simple_repeat 3 27 0 289 329 121 7 chr12 72342208 72342357 -71940132 - MIR SINE MIR -95 167 2 1144 132 0 16 chr12 72343003 72343192 -71939297 + MER83 LTR ERV1 263 448 0 23623 108 10 21 chr12 72343192 72345436 -71937053 + MER83-int LTR ERV1 12 2280 -2005 2191 121 0 0 chr12 72345436 72345733 -71936756 - AluSx SINE Alu 0 312 16 23623 108 10 21 chr12 72345733 72347130 -71935359 + MER83-int LTR ERV1 2280 3548 -737 1956 118 121 18 chr12 72347130 72347460 -71935029 + THE1B LTR MaLR 1 364 0 23623 108 10 21 chr12 72347460 72348179 -71934310 + MER83-int LTR ERV1 3548 4274 -11 2280 144 117 5 chr12 72348180 72348583 -71933906 + MER83 LTR ERV1 1 448 0 912 274 97 30 chr12 72348843 72349510 -71932979 + L2 LINE L2 2453 3180 -133 732 293 175 13 chr12 72349563 72350141 -71932348 - L2 LINE L2 -75 3238 2569 287 378 6 0 chr12 72350523 72350679 -71931810 + HERVL LTR ERVL 5131 5287 -367 1057 291 72 43 chr12 72350968 72351368 -71931121 + LTR33 LTR ERVL 15 433 -88 1636 149 17 112 chr12 72351368 72351771 -71930718 + MLT1A1 LTR MaLR 1 365 0 1057 291 72 43 chr12 72351771 72351854 -71930635 + LTR33 LTR ERVL 433 512 -9 192 284 137 66 chr12 72352836 72353019 -71929470 - L2 LINE L2 -97 3175 2980 235 250 163 38 chr12 72353179 72353259 -71929230 + L2 LINE L2 3169 3258 -14 382 219 0 76 chr12 72354301 72354420 -71928069 - MER58C DNA MER1_type -1 214 105 189 176 0 44 chr12 72354420 72354488 -71928001 + CT-rich Low_complexity Low_complexity 1 65 0 369 232 95 0 chr12 72354488 72354583 -71927906 - MER58C DNA MER1_type -106 109 6 739 171 20 14 chr12 72354880 72355026 -71927463 - L1MC1 LINE L1 -22 6311 6165 660 263 42 34 chr12 72356322 72356558 -71925931 - L2 LINE L2 -18 3295 3058 1963 142 22 19 chr12 72356561 72356928 -71925561 - MLT1B LTR MaLR 0 390 23 563 277 36 50 chr12 72356980 72357297 -71925192 - L2 LINE L2 -260 3053 2740 343 336 7 27 chr12 72358043 72358189 -71924300 + MIR SINE MIR 49 191 -71 314 279 70 23 chr12 72358415 72358544 -71923945 + MIR SINE MIR 11 145 -117 255 212 0 40 chr12 72358970 72359069 -71923420 + CT-rich Low_complexity Low_complexity 4 98 0 2138 174 18 21 chr12 72359073 72359510 -71922979 - L1MB5 LINE L1 0 6174 5739 896 294 68 43 chr12 72359521 72360122 -71922367 + L2 LINE L2 2698 3306 -7 389 208 0 10 chr12 72360622 72360718 -71921771 - HsTC2 DNA Tc2 -1 1897 1803 1141 208 65 3 chr12 72360722 72361016 -71921473 - HsTC2 DNA Tc2 -1466 432 121 21 36 0 0 chr12 72361049 72361077 -71921412 + AT_rich Low_complexity Low_complexity 1 28 0 337 291 36 0 chr12 72361329 72361439 -71921050 - L3 LINE CR1 -157 1420 1307 473 314 52 9 chr12 72361631 72361841 -71920648 - MIR SINE MIR -3 259 41 2224 101 3 3 chr12 72361894 72362192 -71920297 + AluSc SINE Alu 1 298 -11 237 345 67 0 chr12 72362272 72362391 -71920098 - MARNA DNA Mariner -117 469 343 252 0 0 0 chr12 72363000 72363028 -71919461 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 291 181 0 0 chr12 72363298 72363370 -71919119 + T-rich Low_complexity Low_complexity 1 72 0 182 356 96 9 chr12 72363782 72363897 -71918592 - L2 LINE L2 -4 3309 3185 260 254 0 0 chr12 72365508 72365567 -71916922 - L2 LINE L2 0 3313 3255 582 181 20 5 chr12 72365567 72365771 -71916718 + CT-rich Low_complexity Low_complexity 1 207 0 441 0 0 0 chr12 72366019 72366068 -71916421 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 225 108 0 0 chr12 72366433 72366470 -71916019 + (A)n Simple_repeat Simple_repeat 1 37 0 193 172 31 31 chr12 72369013 72369077 -71913412 + CT-rich Low_complexity Low_complexity 3 66 0 1950 127 0 0 chr12 72369417 72369684 -71912805 + AluSx SINE Alu 1 267 -45 378 245 109 5 chr12 72369696 72369888 -71912601 - L1M4 LINE L1 -945 5201 4990 * 4288 248 41 35 chr12 72369875 72371541 -71910948 - L1MEc LINE L1 -2223 3992 2317 2831 230 27 10 chr12 72371539 72372404 -71910085 - L1MEc LINE L1 -4946 1450 572 * 1224 264 42 29 chr12 72372416 72372935 -71909554 - L1MC5 LINE L1 -465 7496 6971 2190 103 3 3 chr12 72374051 72374343 -71908146 - AluSc SINE Alu -17 292 1 1839 157 3 53 chr12 72374370 72374688 -71907801 + AluSx SINE Alu 1 302 -10 1912 163 3 23 chr12 72374812 72375161 -71907328 + L1MA4 LINE L1 1253 1594 -4971 * 13745 174 45 21 chr12 72375157 72379311 -71903178 + L1MA4 LINE L1 3226 7467 -252 519 129 0 0 chr12 72379320 72379413 -71903076 + L1MA4 LINE L1 7622 7714 -5 640 544 0 0 chr12 72379984 72380164 -71902325 + T-rich Low_complexity Low_complexity 1 180 0 4208 70 50 30 chr12 72380752 72381348 -71901141 + LTR14B LTR ERVK 1 608 0 359 270 90 18 chr12 72381583 72381694 -71900795 - L2 LINE L2 0 3313 3195 2233 99 10 13 chr12 72381703 72382016 -71900473 + AluSq SINE Alu 1 312 -1 1610 140 55 18 chr12 72382454 72382782 -71899707 + Tigger2 DNA MER2_type 17 356 -2362 324 140 0 0 chr12 72382783 72382833 -71899656 - Tigger2 DNA MER2_type -1587 1131 1082 11741 129 18 15 chr12 72382919 72385250 -71897239 + Tigger2 DNA MER2_type 356 2708 -10 2377 83 0 0 chr12 72386060 72386361 -71896128 + AluY SINE Alu 1 301 -10 300 344 8 16 chr12 72387020 72387142 -71895347 + MIR3 SINE MIR 77 197 -11 430 279 99 112 chr12 72387518 72387736 -71894753 + L2 LINE L2 2836 3055 -258 1939 135 55 19 chr12 72387736 72388098 -71894391 + THE1C LTR MaLR 1 375 0 430 279 99 112 chr12 72388098 72388362 -71894127 + L2 LINE L2 3055 3312 -1 364 252 198 13 chr12 72391094 72391332 -71891157 + L2 LINE L2 2989 3270 -43 2073 107 14 0 chr12 72392019 72392328 -71890161 + AluSx SINE Alu 1 313 0 248 331 131 8 chr12 72392441 72392571 -71889918 - L2 LINE L2 -8 3264 3119 304 182 0 91 chr12 72392657 72392734 -71889755 + L2 LINE L2 3002 3071 -201 405 385 57 4 chr12 72392957 72393201 -71889288 - L3 LINE CR1 -2 1575 1319 200 361 0 0 chr12 72393500 72393583 -71888906 + (TATATG)n Simple_repeat Simple_repeat 3 85 0 347 298 187 44 chr12 72393735 72394051 -71888438 - L1MC/D LINE L1 -2167 5641 5281 807 249 42 53 chr12 72394690 72394955 -71887534 + L2 LINE L2 3052 3313 0 559 292 19 34 chr12 72395491 72395700 -71886789 + MLT1K LTR MaLR 188 393 -195 778 323 96 16 chr12 72395706 72396071 -71886418 + L2 LINE L2 2010 2403 -911 689 300 82 0 chr12 72396096 72396329 -71886160 + MIR SINE MIR 11 262 0 1023 308 104 45 chr12 72396354 72397120 -71885369 + L2 LINE L2 2431 3225 -88 333 351 53 15 chr12 72397290 72397421 -71885068 + L2 LINE L2 3136 3271 -1 215 301 97 43 chr12 72398111 72398204 -71884285 + L2 LINE L2 3214 3311 -2 294 274 151 67 chr12 72398614 72398841 -71883648 - L2 LINE L2 0 3313 3056 2355 87 3 3 chr12 72398841 72399140 -71883349 + AluY SINE Alu 1 299 -12 294 274 151 67 chr12 72399140 72399197 -71883292 - L2 LINE L2 -257 3056 3005 294 259 26 9 chr12 72399806 72399922 -71882567 - MER103 DNA DNA -13 153 36 35 63 0 0 chr12 72400797 72400860 -71881629 + AT_rich Low_complexity Low_complexity 1 63 0 216 341 11 11 chr12 72401665 72401756 -71880733 + MIR3 SINE MIR 101 191 -17 2906 285 74 35 chr12 72401979 72403089 -71879400 + L2 LINE L2 7 1159 -2155 1901 148 0 0 chr12 72403288 72403566 -71878923 - AluJb SINE Alu -24 288 11 607 284 15 0 chr12 72403572 72403724 -71878765 - MIR SINE MIR -59 149 38 234 247 0 0 chr12 72403772 72403865 -71878624 + A-rich Low_complexity Low_complexity 1 93 0 209 180 20 0 chr12 72404593 72404643 -71877846 + CT-rich Low_complexity Low_complexity 2 52 0 727 169 23 15 chr12 72404849 72404979 -71877510 - FLAM_A SINE Alu -2 131 1 502 200 192 0 chr12 72405207 72405332 -71877157 + MIR SINE MIR 101 249 -13 1057 196 83 52 chr12 72405473 72405799 -71876690 + MLT1C LTR MaLR 132 467 0 4043 145 66 80 chr12 72406468 72406805 -71875684 - L1MC2 LINE L1 -20 6324 5984 488 158 0 42 chr12 72406805 72406900 -71875589 - AluJb SINE Alu -30 282 192 4043 145 66 80 chr12 72406900 72407634 -71874855 - L1MC2 LINE L1 -360 5984 5175 1752 80 92 0 chr12 72407636 72407886 -71874603 - AluY SINE Alu -1 310 38 442 331 40 98 chr12 72407902 72408142 -71874347 - L2 LINE L2 -9 3263 3042 2231 95 3 33 chr12 72408142 72408446 -71874043 + AluSx SINE Alu 1 295 -17 442 331 40 98 chr12 72408446 72408501 -71873988 - L2 LINE L2 -230 3042 2985 272 216 0 0 chr12 72409055 72409106 -71873383 - LTR33A LTR ERVL 0 523 473 377 241 92 0 chr12 72409358 72409445 -71873044 - MLT2E LTR ERVL -505 123 29 191 350 20 0 chr12 72409842 72409942 -71872547 - L2 LINE L2 -1020 2294 2193 2647 39 0 0 chr12 72409942 72410251 -71872238 + AluY SINE Alu 1 309 -2 1053 258 124 31 chr12 72411052 72411673 -71870816 + L2 LINE L2 2606 3276 -37 4277 152 82 10 chr12 72411682 72412560 -71869929 - L1MC1 LINE L1 0 6333 5393 243 296 0 0 chr12 72412739 72412810 -71869679 + MLT1K LTR MaLR 518 588 0 955 284 30 6 chr12 72413022 72413353 -71869136 + LTR16C LTR ERVL 150 488 -3 500 210 242 68 chr12 72413471 72413690 -71868799 - MIR SINE MIR 0 262 6 236 321 75 28 chr12 72414157 72414263 -71868226 - L2 LINE L2 -21 3251 3141 6127 107 8 0 chr12 72415216 72416502 -71865987 - L1PA10 LINE L1 -8 6160 4866 216 0 0 0 chr12 72416826 72416850 -71865639 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2186 114 0 3 chr12 72417045 72417342 -71865147 - AluSg SINE Alu -14 296 1 1405 206 24 38 chr12 72417375 72417666 -71864823 - AluJo SINE Alu -25 287 1 21 36 0 0 chr12 72417666 72417694 -71864795 + AT_rich Low_complexity Low_complexity 1 28 0 887 157 29 0 chr12 72417696 72417836 -71864653 - FRAM SINE Alu -13 163 20 525 258 129 48 chr12 72417894 72418165 -71864324 - MLT1J1 LTR MaLR -44 402 110 201 132 0 0 chr12 72418464 72418502 -71863987 + (T)n Simple_repeat Simple_repeat 1 38 0 529 296 112 0 chr12 72419029 72419208 -71863281 + MIR SINE MIR 13 211 -51 2369 89 3 0 chr12 72419947 72420249 -71862240 - AluSq SINE Alu 0 313 11 2401 225 27 15 chr12 72420445 72421011 -71861478 + MER77 LTR ERV1 53 603 -19 2635 266 130 53 chr12 72421034 72422364 -71860125 - HAL1 LINE L1 -48 2459 880 2100 138 0 0 chr12 72422364 72422654 -71859835 - AluSx SINE Alu -22 290 1 2635 266 130 53 chr12 72422654 72423596 -71858893 - HAL1 LINE L1 -1627 880 12 768 291 37 8 chr12 72423867 72424111 -71858378 - MIR SINE MIR 0 262 12 335 258 60 66 chr12 72424182 72424349 -71858140 + L1ME4a LINE L1 5955 6120 -1 2041 95 0 134 chr12 72424857 72425216 -71857273 - AluSx SINE Alu -1 311 1 436 298 53 48 chr12 72425302 72425490 -71856999 - MIR3 SINE MIR -1 207 19 543 250 7 35 chr12 72425665 72425809 -71856680 + MER117 DNA MER1_type 51 190 -7 830 221 12 6 chr12 72427073 72427245 -71855244 - MER45A DNA AcHobo 0 178 6 22 0 0 0 chr12 72428262 72428284 -71854205 + AT_rich Low_complexity Low_complexity 1 22 0 202 371 24 24 chr12 72428607 72428731 -71853758 - L2 LINE L2 -223 3049 2926 2401 50 9 59 chr12 72428764 72429086 -71853403 + AluY SINE Alu 1 306 -5 645 290 19 10 chr12 72429109 72429316 -71853173 - MIR SINE MIR 0 262 54 482 266 0 0 chr12 72429550 72429659 -71852830 + MER33 DNA MER1_type 1 109 -215 2386 104 0 7 chr12 72429664 72429972 -71852517 - AluSg SINE Alu -2 308 3 804 167 54 31 chr12 72429995 72430217 -71852272 + MER33 DNA MER1_type 98 324 0 270 56 0 0 chr12 72431758 72431794 -71850695 + (CA)n Simple_repeat Simple_repeat 1 36 0 338 326 72 28 chr12 72432951 72433132 -71849357 + MIR3 SINE MIR 10 198 -10 296 232 81 30 chr12 72434391 72434490 -71847999 + MER5B DNA MER1_type 1 104 -74 332 291 76 25 chr12 72434579 72434765 -71847724 - MIR SINE MIR -8 200 16 26 74 0 0 chr12 72435165 72435219 -71847270 + AT_rich Low_complexity Low_complexity 1 54 0 351 352 39 0 chr12 72436107 72436278 -71846211 + MIR SINE MIR 11 187 -67 * 810 276 70 79 chr12 72436277 72436745 -71845744 - L2 LINE L2 0 3313 2850 793 299 220 9 chr12 72436733 72437074 -71845415 - L2 LINE L2 -2888 426 14 * 1910 208 45 51 chr12 72438207 72438713 -71843776 - MLT1D LTR MaLR -2 503 1 2170 202 121 4 chr12 72438916 72439460 -71843029 + L1MC4 LINE L1 6471 7078 -964 1969 268 36 12 chr12 72439465 72440108 -71842381 + L1MC4 LINE L1 7240 7897 -145 1751 134 0 29 chr12 72440148 72440423 -71842066 - AluJb SINE Alu -19 293 27 501 332 126 17 chr12 72440564 72440967 -71841522 + MLT1G1 LTR MaLR 16 444 -146 2269 135 0 0 chr12 72440985 72441297 -71841192 + AluSx SINE Alu 1 312 0 2527 216 124 85 chr12 72441313 72442674 -71839815 + L1MCa LINE L1 3 1581 -4983 1728 183 34 66 chr12 72442674 72443083 -71839406 + MSTD LTR MaLR 1 396 0 2527 216 124 85 chr12 72443083 72443198 -71839291 + L1MCa LINE L1 1581 1690 -4874 1476 188 75 54 chr12 72443204 72443645 -71838844 - MLT1D LTR MaLR 0 505 56 2621 224 59 3 chr12 72443645 72444396 -71838093 + L1M4 LINE L1 4156 4948 -1198 368 242 147 63 chr12 72445252 72445537 -71836952 - MER110 LTR ERV1 -6 485 177 256 186 29 128 chr12 72446529 72446631 -71835858 - MIR SINE MIR -52 210 119 301 225 106 92 chr12 72447295 72447437 -71835052 + MIR SINE MIR 119 262 0 182 307 80 13 chr12 72451159 72451234 -71831255 + MIR SINE MIR 131 210 -52 475 272 7 20 chr12 72451235 72451382 -71831107 - MER20B DNA MER1_type -598 185 41 255 235 0 102 chr12 72453400 72453498 -71828991 + MIR SINE MIR 156 243 -19 332 282 205 8 chr12 72453701 72453818 -71828671 - MIR SINE MIR -79 183 44 237 224 0 17 chr12 72455234 72455292 -71827197 + L1M3c LINE L1 958 1014 -6084 1116 283 32 13 chr12 72456149 72456823 -71825666 + L1M3c LINE L1 1614 2328 -4770 * 20635 157 24 11 chr12 72456821 72460433 -71822056 + L1MA2 LINE L1 23 3588 -4135 2269 101 3 0 chr12 72460433 72460729 -71821760 + AluSp SINE Alu 1 297 -16 203 59 0 29 chr12 72460732 72460766 -71821723 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 20635 157 24 11 chr12 72460766 72462262 -71820227 + L1MA2 LINE L1 3589 5065 -2658 1946 137 3 0 chr12 72462262 72462546 -71819943 + AluSx SINE Alu 25 309 -3 20635 157 24 11 chr12 72462546 72465039 -71817450 + L1MA2 LINE L1 5065 7721 -2 3894 214 39 64 chr12 72465062 72465401 -71817088 + L1M1 LINE L1 2375 2721 -4844 1960 156 0 43 chr12 72465401 72465727 -71816762 + AluJb SINE Alu 1 312 0 3894 214 39 64 chr12 72465727 72467610 -71814879 + L1M1 LINE L1 2721 4527 -3038 383 238 14 61 chr12 72467819 72467966 -71814523 - L3 LINE CR1 -634 943 804 372 297 59 68 chr12 72467970 72468192 -71814297 + L2 LINE L2 2923 3142 -171 211 339 0 0 chr12 72468218 72468283 -71814206 + L2 LINE L2 3249 3313 0 22 56 0 0 chr12 72468404 72468440 -71814049 + AT_rich Low_complexity Low_complexity 1 36 0 498 292 172 35 chr12 72468660 72469253 -71813236 - L2 LINE L2 -830 2484 1811 503 286 25 49 chr12 72469323 72469526 -71812963 - L3 LINE CR1 -608 969 772 592 268 47 47 chr12 72470878 72471091 -71811398 - MIR SINE MIR -14 248 36 15044 132 18 14 chr12 72472151 72474347 -71808142 + Tigger1 DNA MER2_type 2 2209 -209 1678 189 0 7 chr12 72474347 72474633 -71807856 - AluJo SINE Alu -18 294 11 15044 132 18 14 chr12 72474633 72474842 -71807647 + Tigger1 DNA MER2_type 2209 2416 -2 244 272 94 23 chr12 72475879 72476005 -71806484 + MIR SINE MIR 9 140 -68 265 369 21 35 chr12 72476282 72476423 -71806066 - L2 LINE L2 0 3272 3134 327 287 123 8 chr12 72477044 72477166 -71805323 + MIR3 SINE MIR 9 144 -64 274 151 43 11 chr12 72477231 72477324 -71805165 + (TA)n Simple_repeat Simple_repeat 1 96 0 23 33 0 0 chr12 72477368 72477398 -71805091 + AT_rich Low_complexity Low_complexity 1 30 0 1450 195 12 100 chr12 72477438 72477848 -71804641 + MLT1A2 LTR MaLR 1 374 0 2349 67 0 0 chr12 72478721 72479071 -71803418 - AluY SINE Alu 0 350 1 803 168 0 0 chr12 72479086 72479217 -71803272 - FLAM_C SINE Alu 0 133 3 740 293 141 10 chr12 72480335 72480799 -71801690 - L2 LINE L2 0 3313 2783 710 305 57 59 chr12 72481007 72481768 -71800721 - L2 LINE L2 0 3272 2517 201 315 22 43 chr12 72482040 72482132 -71800357 - L2 LINE L2 -31 3282 3193 317 293 64 0 chr12 72482621 72482761 -71799728 + L1ME LINE L1 5543 5691 -430 396 0 0 0 chr12 72483161 72483205 -71799284 + (CA)n Simple_repeat Simple_repeat 2 45 0 687 213 93 85 chr12 72483256 72483514 -71798975 - MIR SINE MIR -1 261 2 328 330 78 11 chr12 72483538 72483717 -71798772 + MIR SINE MIR 53 243 -19 1156 169 42 17 chr12 72484487 72484724 -71797765 - MLT1D LTR MaLR -260 245 3 361 336 227 27 chr12 72484728 72485722 -71796767 - L2 LINE L2 -595 2719 1527 277 290 14 0 chr12 72485902 72485971 -71796518 + MIR SINE MIR 45 114 -148 1475 169 0 0 chr12 72485971 72486196 -71796293 + AluJb SINE Alu 71 295 -17 2176 141 0 0 chr12 72486671 72486970 -71795519 - AluSx SINE Alu -13 299 1 43 56 0 0 chr12 72487004 72487075 -71795414 + AT_rich Low_complexity Low_complexity 1 71 0 310 250 28 0 chr12 72487087 72487159 -71795330 - L1MC4 LINE L1 -1339 6703 6630 421 241 40 81 chr12 72487958 72488132 -71794357 - L2 LINE L2 -1 3312 3146 199 330 55 0 chr12 72488374 72488465 -71794024 + L2 LINE L2 2978 3073 -199 233 235 0 0 chr12 72488630 72488681 -71793808 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 504 0 0 0 chr12 72489265 72489321 -71793168 + (TG)n Simple_repeat Simple_repeat 2 57 0 359 203 48 13 chr12 72489594 72489773 -71792716 - MER20B DNA MER1_type -46 737 515 356 248 119 80 chr12 72490069 72490295 -71792194 + MER20B DNA MER1_type 30 264 -519 654 245 176 42 chr12 72490484 72490909 -71791580 - L1M4 LINE L1 -2931 3215 2734 456 165 104 17 chr12 72490909 72491022 -71791467 + MLT1C LTR MaLR 1 123 -344 4105 141 84 28 chr12 72491022 72491840 -71790649 - MER4D LTR ERV1 -2 870 7 1032 213 132 11 chr12 72491885 72492172 -71790317 + MLT1C LTR MaLR 144 465 -2 569 171 0 45 chr12 72492760 72492871 -71789618 - Tigger7 DNA MER2_type 0 2487 2382 1174 189 8 42 chr12 72492884 72493122 -71789367 - Tigger7 DNA MER2_type -2257 230 1 383 339 145 34 chr12 72493439 72493964 -71788525 - L2 LINE L2 -557 2757 2175 1054 162 29 33 chr12 72493992 72494202 -71788287 - MER3 DNA MER1_type 0 209 1 309 209 217 17 chr12 72494370 72494485 -71788004 - MIR SINE MIR -76 186 49 293 351 117 5 chr12 72494544 72494732 -71787757 - L2 LINE L2 -1267 2047 1839 340 252 39 47 chr12 72494934 72495061 -71787428 + MIR SINE MIR 66 191 -71 341 312 70 65 chr12 72498162 72498377 -71784112 - MIR SINE MIR -45 217 2 744 289 68 58 chr12 72498653 72498804 -71783685 + L1ME LINE L1 4475 4623 -1539 207 0 0 0 chr12 72498804 72498827 -71783662 + (TTG)n Simple_repeat Simple_repeat 2 24 0 744 289 68 58 chr12 72498827 72499839 -71782650 + L1ME LINE L1 4623 5661 -501 204 304 0 0 chr12 72499840 72499896 -71782593 - MER5A DNA MER1_type -6 183 128 2263 284 80 42 chr12 72499977 72501128 -71781361 - L2 LINE L2 0 3313 2113 395 263 131 15 chr12 72501136 72501395 -71781094 + L1MEc LINE L1 1450 1738 -4658 25 0 0 0 chr12 72502027 72502052 -71780437 + AT_rich Low_complexity Low_complexity 1 25 0 390 312 72 51 chr12 72502063 72503046 -71779443 + L1M4 LINE L1 3839 4842 -1304 305 258 58 64 chr12 72503334 72503600 -71778889 + L1MA9 LINE L1 5161 5424 -738 21 57 0 0 chr12 72503792 72503827 -71778662 + AT_rich Low_complexity Low_complexity 1 35 0 729 237 177 48 chr12 72503842 72504238 -71778251 - LTR16A1 LTR ERVL -10 447 1 295 182 11 11 chr12 72504238 72504326 -71778163 + (CA)n Simple_repeat Simple_repeat 1 88 0 711 322 133 38 chr12 72505067 72505369 -71777120 + L2 LINE L2 2148 2420 -894 2456 130 6 3 chr12 72505369 72505730 -71776759 + THE1B LTR MaLR 1 362 -2 10849 101 14 30 chr12 72505731 72507338 -71775151 + THE1B-int LTR MaLR 1 1580 0 2489 120 6 3 chr12 72507340 72507698 -71774791 + THE1B LTR MaLR 3 361 -3 711 322 133 38 chr12 72507698 72508049 -71774440 + L2 LINE L2 2420 2869 -445 590 113 35 0 chr12 72508057 72508172 -71774317 - LTR9B LTR ERV1 -80 564 446 448 309 116 42 chr12 72508264 72508471 -71774018 + L2 LINE L2 3005 3240 -73 249 33 0 0 chr12 72508471 72508501 -71773988 + (TG)n Simple_repeat Simple_repeat 1 30 0 448 309 116 42 chr12 72508501 72508578 -71773911 + L2 LINE L2 3240 3310 -3 207 293 0 0 chr12 72510766 72510824 -71771665 + MIR SINE MIR 73 130 -78 321 264 65 19 chr12 72511119 72511274 -71771215 + MLT1J LTR MaLR 301 462 -49 1572 71 0 0 chr12 72511877 72512074 -71770415 - MER107 DNA MER1_type 0 197 1 367 333 17 0 chr12 72512264 72512381 -71770108 - L3 LINE CR1 -67 1510 1392 254 287 120 27 chr12 72512471 72512621 -71769868 + MIR SINE MIR 28 191 -71 520 253 114 6 chr12 72512622 72512788 -71769701 - MIR SINE MIR 0 262 79 283 321 70 89 chr12 72513004 72513210 -71769279 - L3 LINE CR1 -352 1225 1025 2137 117 7 7 chr12 72513210 72513518 -71768971 - AluSx SINE Alu -4 308 1 283 321 70 89 chr12 72513518 72513613 -71768876 - L3 LINE CR1 -552 1025 930 2803 214 62 23 chr12 72513740 72514520 -71767969 + L1MA9 LINE L1 5465 6274 -38 270 0 0 0 chr12 72514769 72514799 -71767690 + (CA)n Simple_repeat Simple_repeat 2 31 0 310 310 9 18 chr12 72515549 72515662 -71766827 - MIR SINE MIR -6 256 145 46 54 0 0 chr12 72516768 72516842 -71765647 + AT_rich Low_complexity Low_complexity 1 74 0 808 210 134 9 chr12 72517088 72517312 -71765177 + MIR SINE MIR 11 262 0 1025 162 96 0 chr12 72517363 72517561 -71764928 + MER20 DNA MER1_type 2 218 -1 235 320 66 44 chr12 72517788 72518153 -71764336 + L1ME LINE L1 5510 5882 -239 25 51 0 0 chr12 72518658 72518697 -71763792 + AT_rich Low_complexity Low_complexity 1 39 0 1733 158 4 4 chr12 72518866 72519144 -71763345 - AluJo SINE Alu -1 311 34 333 132 0 0 chr12 72519815 72519868 -71762621 + LTR68 LTR ERV1 1 53 -687 * 1009 194 66 3 chr12 72519866 72520251 -71762238 + LTR68 LTR ERV1 294 734 -6 372 240 132 62 chr12 72520434 72520722 -71761767 + L1MC/D LINE L1 5278 5585 -2200 395 208 16 62 chr12 72520730 72520859 -71761630 + MLT1E2 LTR MaLR 1 194 -460 1028 313 55 2 chr12 72520874 72521292 -71761197 + L1M2 LINE L1 11 450 -6399 329 344 78 62 chr12 72521313 72521505 -71760984 + L1M2 LINE L1 586 780 -6069 347 376 34 8 chr12 72521649 72521766 -71760723 + L1M2 LINE L1 666 785 -6064 1202 232 0 52 chr12 72521788 72522094 -71760395 + L1PA16 LINE L1 444 733 -6116 6125 230 13 41 chr12 72522572 72525676 -71756813 + L1PA16 LINE L1 1436 4494 -2355 * 25178 151 13 14 chr12 72525675 72531988 -71750501 + L1PA10 LINE L1 24 6481 -2 7037 167 16 22 chr12 72531996 72532329 -71750160 + L1PA16 LINE L1 4478 4811 -2058 2185 118 25 25 chr12 72532329 72532693 -71749796 + THE1B LTR MaLR 1 364 0 7037 167 16 22 chr12 72532693 72534681 -71747808 + L1PA16 LINE L1 4811 6808 -61 2083 105 3 11 chr12 72534681 72534967 -71747522 + AluSx SINE Alu 1 284 -28 252 0 0 0 chr12 72534974 72535002 -71747487 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 7037 167 16 22 chr12 72535002 72535056 -71747433 + L1PA16 LINE L1 6814 6847 -22 25 31 0 0 chr12 72535056 72535088 -71747401 + AT_rich Low_complexity Low_complexity 1 32 0 1355 229 51 27 chr12 72535088 72535463 -71747026 + MLT1D LTR MaLR 120 503 -2 2151 16 0 0 chr12 72535496 72535751 -71746738 - L1PA3 LINE L1 -496 5659 5405 * 2879 26 0 0 chr12 72535750 72536100 -71746389 + L1PA3 LINE L1 5678 6027 -128 4060 34 0 0 chr12 72535751 72536228 -71746261 + L1PA3 LINE L1 5678 6155 0 552 302 24 0 chr12 72536237 72536449 -71746040 + HAL1 LINE L1 92 308 -2199 2571 235 17 26 chr12 72536635 72537358 -71745131 + L1ME2 LINE L1 5440 6155 -9 3016 261 251 5 chr12 72537422 72538779 -71743710 + L2 LINE L2 1026 2719 -595 753 257 97 58 chr12 72538779 72539090 -71743399 - MER5C DNA MER1_type 0 324 2 708 289 224 10 chr12 72539098 72539583 -71742906 + L2 LINE L2 2712 3313 0 358 277 92 45 chr12 72540220 72540512 -71741977 + L1ME4a LINE L1 5788 6093 -28 278 248 156 0 chr12 72541372 72541481 -71741008 + MER117 DNA MER1_type 12 137 -60 550 329 54 2 chr12 72541640 72542047 -71740442 - L1ME3A LINE L1 -221 5949 5522 14105 75 5 0 chr12 72542433 72544177 -71738312 + L1PA6 LINE L1 3403 5197 -967 183 42 0 0 chr12 72544177 72544201 -71738288 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 14105 75 5 0 chr12 72544201 72545174 -71737315 + L1PA6 LINE L1 5197 6164 0 189 0 0 0 chr12 72545469 72545490 -71736999 + (TTA)n Simple_repeat Simple_repeat 2 22 0 567 125 0 10 chr12 72545525 72545629 -71736860 - L1MA4 LINE L1 -4 6296 6194 1749 84 32 46 chr12 72545963 72546162 -71736327 - MER1A DNA MER1_type -2173 529 334 2295 104 7 0 chr12 72546162 72546469 -71736020 - AluSx SINE Alu -3 309 1 1749 84 32 46 chr12 72546469 72546553 -71735936 - MER1A DNA MER1_type -2368 334 250 871 285 96 10 chr12 72547610 72548070 -71734419 - LTR67 LTR ERVL -4 553 2 1058 297 51 34 chr12 72548510 72549236 -71733253 - L2 LINE L2 -54 3259 2450 988 280 68 11 chr12 72549245 72549613 -71732876 + MLT1G1 LTR MaLR 1 389 -206 750 253 68 21 chr12 72549942 72550132 -71732357 - MIR SINE MIR -38 224 26 311 289 18 26 chr12 72550247 72550361 -71732128 + L2 LINE L2 2596 2708 -606 2353 56 0 0 chr12 72550794 72551081 -71731408 - AluY SINE Alu -22 289 3 190 88 29 29 chr12 72551911 72551945 -71730544 + MER5A DNA MER1_type 134 167 -22 2044 110 29 23 chr12 72553334 72553642 -71728847 + AluSg SINE Alu 1 310 0 215 254 55 0 chr12 72555526 72555581 -71726908 + MIR SINE MIR 131 188 -74 629 297 64 4 chr12 72555633 72555899 -71726590 - LTR16A1 LTR ERVL -2 455 174 220 262 0 0 chr12 72556167 72556209 -71726280 + L2 LINE L2 3215 3256 -16 333 0 0 0 chr12 72557139 72557176 -71725313 + (CA)n Simple_repeat Simple_repeat 2 38 0 401 323 94 53 chr12 72557190 72557626 -71724863 - L1M4 LINE L1 -1162 4984 4531 382 164 14 14 chr12 72558757 72558830 -71723659 - Tigger5 DNA MER2_type 0 2323 2251 271 170 0 0 chr12 72558800 72558847 -71723642 - Tigger5 DNA MER2_type -2269 54 8 * 27 29 0 0 chr12 72559317 72559351 -71723138 + AT_rich Low_complexity Low_complexity 1 34 0 217 269 15 0 chr12 72559598 72559665 -71722824 + T-rich Low_complexity Low_complexity 2 69 0 270 0 0 0 chr12 72560280 72560310 -71722179 + (TG)n Simple_repeat Simple_repeat 2 31 0 2749 72 17 0 chr12 72560707 72561056 -71721433 + THE1A LTR MaLR 1 355 0 222 319 87 113 chr12 72561093 72561359 -71721130 + L2 LINE L2 2946 3204 -68 536 254 65 65 chr12 72562871 72563072 -71719417 + L2 LINE L2 2633 2833 -481 253 250 119 0 chr12 72563167 72563251 -71719238 + L2 LINE L2 2801 2894 -420 2399 251 57 60 chr12 72563257 72563679 -71718810 - L1M4 LINE L1 -2318 3828 3406 2510 137 11 70 chr12 72563679 72564133 -71718356 - MSTA LTR MaLR 0 428 2 2399 251 57 60 chr12 72564133 72564822 -71717667 - L1M4 LINE L1 -2740 3406 2721 1254 258 120 16 chr12 72564823 72565058 -71717431 + L2 LINE L2 2904 3192 -121 333 0 0 0 chr12 72565058 72565095 -71717394 + (TG)n Simple_repeat Simple_repeat 2 38 0 1254 258 120 16 chr12 72565095 72565227 -71717262 + L2 LINE L2 3192 3309 -4 242 292 83 14 chr12 72565389 72565461 -71717028 - L2 LINE L2 -38 3234 3158 190 401 83 0 chr12 72565485 72565617 -71716872 - L2 LINE L2 -463 2851 2709 1587 307 80 36 chr12 72565651 72566513 -71715976 - L2 LINE L2 -5 3308 2382 1674 163 94 30 chr12 72566513 72566876 -71715613 + MLT1B LTR MaLR 1 386 -4 1587 307 80 36 chr12 72566876 72567059 -71715430 - L2 LINE L2 -931 2382 2208 22 0 0 0 chr12 72567385 72567407 -71715082 + AT_rich Low_complexity Low_complexity 1 22 0 181 43 0 0 chr12 72567551 72567574 -71714915 + MIR SINE MIR 215 237 -25 867 283 117 36 chr12 72567889 72568383 -71714106 - MLT1H LTR MaLR -2 547 14 802 291 57 0 chr12 72568968 72569195 -71713294 + MIR SINE MIR 23 262 0 699 249 175 5 chr12 72571031 72571248 -71711241 + MIR SINE MIR 8 261 -1 25 0 0 0 chr12 72571700 72571725 -71710764 + AT_rich Low_complexity Low_complexity 1 25 0 207 69 0 0 chr12 72571725 72571754 -71710735 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 182 333 34 77 chr12 72572207 72572441 -71710048 - L2 LINE L2 -54 3259 3036 196 289 200 0 chr12 72572562 72572652 -71709837 - MIR SINE MIR -35 227 120 590 355 126 20 chr12 72572908 72573664 -71708825 + L2 LINE L2 2434 3270 -2 572 277 97 5 chr12 72573867 72574073 -71708416 - MIR SINE MIR -25 237 13 255 324 77 65 chr12 72574085 72574255 -71708234 - MER5A DNA MER1_type -14 175 4 328 231 26 13 chr12 72574559 72574637 -71707852 - MIR SINE MIR -116 146 68 675 201 122 19 chr12 72575644 72575680 -71706809 - MLT2D LTR ERVL 0 414 383 276 53 0 0 chr12 72575680 72575718 -71706771 + (TG)n Simple_repeat Simple_repeat 2 39 0 675 201 122 19 chr12 72575718 72575876 -71706613 - MLT2D LTR ERVL -31 383 226 5114 105 5 9 chr12 72575897 72576700 -71705789 + L1PB1 LINE L1 5344 6143 -8 948 224 12 12 chr12 72576703 72576948 -71705541 - MLT2D LTR ERVL -169 245 1 358 298 8 0 chr12 72577016 72577147 -71705342 - MER103 DNA DNA 0 166 35 202 114 29 0 chr12 72577976 72578011 -71704478 + CT-rich Low_complexity Low_complexity 4 39 0 282 248 170 14 chr12 72579451 72579592 -71702897 + MIR SINE MIR 100 262 0 183 259 123 25 chr12 72579593 72579674 -71702815 - MIR3 SINE MIR -34 174 86 298 279 115 0 chr12 72580714 72580836 -71701653 + MLT1J2 LTR MaLR 258 393 -57 2228 111 10 0 chr12 72580861 72581168 -71701321 + AluY SINE Alu 1 310 -1 564 302 36 58 chr12 72581291 72581516 -71700973 - MIR SINE MIR -26 236 17 238 215 32 118 chr12 72581539 72581566 -71700923 + MER5B DNA MER1_type 19 47 -131 836 261 98 34 chr12 72581566 72581983 -71700506 + MLT1J1 LTR MaLR 1 444 -2 238 215 32 118 chr12 72581983 72582048 -71700441 + MER5B DNA MER1_type 47 103 -75 2367 78 0 0 chr12 72582072 72582367 -71700122 - AluY SINE Alu -16 295 1 248 279 12 12 chr12 72582646 72582732 -71699757 + CT-rich Low_complexity Low_complexity 1 86 0 783 317 12 4 chr12 72583187 72583430 -71699059 - MIR SINE MIR -4 258 14 1090 212 69 18 chr12 72583493 72583992 -71698497 - MLT1E1 LTR MaLR 0 654 8 230 250 0 0 chr12 72585085 72585129 -71697360 + (TG)n Simple_repeat Simple_repeat 1 44 0 182 159 43 116 chr12 72586297 72586366 -71696123 + L3 LINE CR1 1202 1265 -312 2320 68 31 0 chr12 72586577 72586869 -71695620 - AluY SINE Alu -10 301 1 24 32 0 0 chr12 72587935 72587966 -71694523 + AT_rich Low_complexity Low_complexity 1 31 0 198 208 0 0 chr12 72589376 72589424 -71693065 + (TG)n Simple_repeat Simple_repeat 1 48 0 1517 177 10 52 chr12 72589818 72590123 -71692366 - AluJo SINE Alu -20 292 1 760 205 44 10 chr12 72590253 72590458 -71692031 - L1MC4a LINE L1 0 7808 7597 3399 240 63 61 chr12 72590491 72591360 -71691129 - L1MC4 LINE L1 -392 7496 6630 281 0 60 20 chr12 72591360 72591410 -71691079 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 3399 240 63 61 chr12 72591410 72593323 -71689166 - L1MC4 LINE L1 -1258 6630 4672 416 258 55 37 chr12 72593348 72593549 -71688940 - L1MC4 LINE L1 -1685 4461 4263 304 230 35 0 chr12 72593562 72593649 -71688840 + MLT1J2 LTR MaLR 359 448 -2 309 292 44 36 chr12 72594073 72594210 -71688279 + L2 LINE L2 2659 2796 -518 363 297 187 0 chr12 72594243 72594398 -71688091 + L2 LINE L2 3129 3312 -1 2248 122 0 0 chr12 72594750 72595061 -71687428 - AluY SINE Alu 0 311 1 2388 91 3 0 chr12 72595062 72595360 -71687129 - AluSc SINE Alu -10 299 1 572 262 152 43 chr12 72595489 72595699 -71686790 - MIR SINE MIR -14 248 16 242 265 61 8 chr12 72596822 72596954 -71685535 - L1ME4a LINE L1 -5 6116 5978 394 277 90 11 chr12 72598100 72598329 -71684160 + L1ME3A LINE L1 5704 5948 -222 234 128 0 0 chr12 72598426 72598465 -71684024 + (GA)n Simple_repeat Simple_repeat 2 40 0 2212 84 3 3 chr12 72599618 72599903 -71682586 + AluSg SINE Alu 9 293 -17 485 288 37 34 chr12 72602145 72602353 -71680136 + MIR SINE MIR 2 218 -44 194 302 19 0 chr12 72602502 72602555 -71679934 - L2 LINE L2 -19 3253 3200 436 318 30 2 chr12 72602718 72602889 -71679600 + MIR SINE MIR 23 198 -61 312 91 0 0 chr12 72602890 72602934 -71679555 + (GA)n Simple_repeat Simple_repeat 1 44 0 1709 131 36 20 chr12 72602980 72603286 -71679203 - THE1C LTR MaLR -3 372 62 234 0 0 0 chr12 72603519 72603545 -71678944 + (A)n Simple_repeat Simple_repeat 1 26 0 205 271 199 60 chr12 72603672 72603823 -71678666 + MIR SINE MIR 13 184 -78 214 171 122 0 chr12 72603834 72603875 -71678614 + L2 LINE L2 3224 3269 -3 2165 163 150 22 chr12 72604212 72604673 -71677816 - MLT2B1 LTR ERVL 0 520 1 1818 191 58 27 chr12 72604673 72604901 -71677588 + MLT1C LTR MaLR 43 291 -176 1695 197 3 7 chr12 72604901 72605206 -71677283 + AluJb SINE Alu 1 304 -8 1818 191 58 27 chr12 72605206 72605389 -71677100 + MLT1C LTR MaLR 291 467 0 509 225 72 11 chr12 72605471 72605681 -71676808 + MLT1H LTR MaLR 24 271 -196 864 213 0 12 chr12 72605685 72605845 -71676644 + AluJo SINE Alu 1 158 -154 228 211 53 13 chr12 72605995 72606071 -71676418 + MLT1H LTR MaLR 464 542 0 316 226 0 20 chr12 72606121 72606223 -71676266 + MER20B DNA MER1_type 684 783 0 359 273 58 16 chr12 72606366 72606487 -71676002 + MIR SINE MIR 84 209 -53 2653 125 28 28 chr12 72606848 72607280 -71675209 - MSTB1 LTR MaLR 0 432 1 901 320 103 44 chr12 72607302 72607867 -71674622 + L3 LINE CR1 971 1568 -9 198 103 0 0 chr12 72608373 72608402 -71674087 + (A)n Simple_repeat Simple_repeat 1 29 0 339 236 0 0 chr12 72609561 72609633 -71672856 + MER58 DNA MER1_type 2348 2419 -1 345 183 111 100 chr12 72609634 72609739 -71672750 - L1ME4a LINE L1 -103 6018 5909 4517 127 12 16 chr12 72609739 72610508 -71671981 - L1MA4A LINE L1 -6 6297 5532 345 183 111 100 chr12 72610508 72610582 -71671907 - L1ME4a LINE L1 -212 5909 5837 680 110 13 110 chr12 72610716 72610871 -71671618 - L1MB3 LINE L1 -2 6181 6042 2280 82 9 9 chr12 72610874 72611193 -71671296 - L1PA13 LINE L1 0 6163 5845 295 183 0 28 chr12 72611193 72611264 -71671225 - L1MB2 LINE L1 -112 6059 5991 1980 156 24 14 chr12 72611292 72611663 -71670826 - THE1C LTR MaLR 0 375 1 244 250 0 0 chr12 72613061 72613113 -71669376 + MIR SINE MIR 101 152 -110 27210 133 21 49 chr12 72613124 72619475 -71663014 + L1PA8 LINE L1 2 6172 0 311 359 20 20 chr12 72622046 72622244 -71660245 - MIR3 SINE MIR -1 207 10 2246 120 13 31 chr12 72622294 72622676 -71659813 + THE1C LTR MaLR 1 375 0 1963 130 21 0 chr12 72622815 72623099 -71659390 - AluSx SINE Alu -21 291 2 1353 265 152 2 chr12 72623494 72623921 -71658568 + LTR16C LTR ERVL 1 491 0 310 298 60 24 chr12 72623984 72624242 -71658247 - MLT1L LTR MaLR -14 590 232 555 318 8 80 chr12 72625561 72625800 -71656689 - MIR SINE MIR -28 234 13 212 200 0 22 chr12 72626426 72626471 -71656018 + GA-rich Low_complexity Low_complexity 2 45 0 22 56 0 0 chr12 72626533 72626569 -71655920 + AT_rich Low_complexity Low_complexity 1 36 0 591 231 227 25 chr12 72626848 72627086 -71655403 - L2 LINE L2 -2 3311 3026 498 353 31 46 chr12 72628449 72628924 -71653565 + L1MEd LINE L1 913 1477 -1013 574 255 95 33 chr12 72628934 72629177 -71653312 + MIR SINE MIR 1 258 -4 198 0 0 0 chr12 72629652 72629674 -71652815 + (TG)n Simple_repeat Simple_repeat 2 23 0 522 284 84 38 chr12 72629701 72629940 -71652549 + L1MC4 LINE L1 6714 6963 -1079 2250 125 37 3 chr12 72630176 72630528 -71651961 + THE1B LTR MaLR 1 364 0 239 217 0 0 chr12 72631217 72631263 -71651226 - MLT1J1 LTR MaLR 0 446 401 1563 194 118 14 chr12 72631972 72632395 -71650094 + MLT1C LTR MaLR 1 467 0 313 311 106 6 chr12 72632417 72632578 -71649911 + MIR SINE MIR 65 241 -21 412 287 90 72 chr12 72632852 72633197 -71649292 - L2 LINE L2 0 3272 2922 267 200 163 0 chr12 72633623 72633703 -71648786 + MLT1J1 LTR MaLR 350 442 -4 2026 189 3 6 chr12 72634070 72634436 -71648053 - MLT1A1 LTR MaLR 0 365 1 286 206 27 27 chr12 72634736 72634809 -71647680 - MIR SINE MIR -120 142 70 854 121 0 0 chr12 72634912 72635028 -71647461 - AluSp/q SINE Alu -9 304 189 11975 21 0 1 chr12 72635037 72637207 -71645282 - L1PA3 LINE L1 -2 6153 3986 646 320 8 40 chr12 72637771 72638018 -71644471 - MIR SINE MIR -1 261 23 273 283 97 0 chr12 72638078 72638191 -71644298 - MIR SINE MIR -48 214 91 1938 149 0 0 chr12 72638224 72638532 -71643957 - AluSx SINE Alu 0 308 1 478 240 47 16 chr12 72638544 72638673 -71643816 + MER94 DNA DNA 1 133 -1 256 322 42 49 chr12 72639101 72639244 -71643245 + MER5B DNA MER1_type 12 153 -25 180 77 0 0 chr12 72639564 72639590 -71642899 + (CATA)n Simple_repeat Simple_repeat 3 28 0 2206 102 7 0 chr12 72640112 72640397 -71642092 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr12 72640626 72640647 -71641842 + AT_rich Low_complexity Low_complexity 1 21 0 489 240 0 56 chr12 72641374 72641447 -71641042 + MIR3 SINE MIR 82 147 -61 2314 82 10 0 chr12 72641447 72641751 -71640738 + AluY SINE Alu 1 307 -4 489 240 0 56 chr12 72641751 72641802 -71640687 + MIR3 SINE MIR 147 199 -9 1151 244 27 44 chr12 72643275 72643643 -71638846 - MLT1A1 LTR MaLR 0 365 1 488 329 40 18 chr12 72644155 72644383 -71638106 + MIR SINE MIR 18 250 -12 2355 81 0 3 chr12 72644770 72645067 -71637422 + AluSc SINE Alu 1 296 -13 303 307 69 98 chr12 72645300 72645577 -71636912 + L2 LINE L2 3004 3272 0 204 234 21 0 chr12 72646785 72646832 -71635657 + CT-rich Low_complexity Low_complexity 2 49 0 257 321 66 97 chr12 72647495 72647691 -71634798 + L2 LINE L2 2990 3179 -93 267 357 86 0 chr12 72648737 72648877 -71633612 - MER5A DNA MER1_type -1 188 37 21 0 0 0 chr12 72650132 72650153 -71632336 + AT_rich Low_complexity Low_complexity 1 21 0 372 290 97 74 chr12 72651425 72651735 -71630754 + MLT1J LTR MaLR 101 417 -94 3166 177 74 14 chr12 72653501 72653572 -71628917 - L1MB7 LINE L1 -14 6170 6105 2425 70 0 10 chr12 72653572 72653872 -71628617 + AluY SINE Alu 1 297 -14 426 39 0 0 chr12 72653873 72653925 -71628564 + (TA)n Simple_repeat Simple_repeat 2 53 0 3166 177 74 14 chr12 72653925 72654558 -71627931 - L1MB7 LINE L1 -78 6106 5422 821 118 8 0 chr12 72654582 72654709 -71627780 - L1PB3 LINE L1 -6 6148 6021 2012 124 3 0 chr12 72654769 72655082 -71627407 - AluSq SINE Alu 0 314 1 346 292 84 32 chr12 72655482 72655636 -71626853 - MIR SINE MIR -72 190 29 27 0 0 0 chr12 72655809 72655836 -71626653 + AT_rich Low_complexity Low_complexity 1 27 0 1258 145 9 0 chr12 72656307 72656521 -71625968 - L1PA13 LINE L1 -2 6161 5946 396 0 0 0 chr12 72656896 72656940 -71625549 + (TG)n Simple_repeat Simple_repeat 2 45 0 405 124 45 0 chr12 72657174 72657263 -71625226 - L1MA7 LINE L1 0 6291 6199 353 327 59 0 chr12 72657703 72657804 -71624685 + MIR SINE MIR 34 140 -122 494 315 51 6 chr12 72658750 72658928 -71623561 - L2 LINE L2 0 3313 3128 439 322 87 7 chr12 72659113 72659262 -71623227 - L2 LINE L2 -5 3267 3107 1719 258 35 12 chr12 72659350 72659857 -71622632 + LTR40a LTR ERVL 1 519 0 910 273 104 28 chr12 72659974 72660407 -71622082 + MLT1J LTR MaLR 1 466 -45 258 312 37 0 chr12 72662201 72662310 -71620179 + MER103 DNA DNA 52 164 -2 22 0 0 0 chr12 72663194 72663216 -71619273 + AT_rich Low_complexity Low_complexity 1 22 0 799 294 87 0 chr12 72663229 72663460 -71619029 + MIR SINE MIR 2 252 -10 2110 127 0 0 chr12 72663484 72663776 -71618713 + AluSx SINE Alu 1 292 -20 198 324 79 14 chr12 72664789 72664928 -71617561 - L2 LINE L2 -954 2360 2213 277 262 76 46 chr12 72665108 72665260 -71617229 + MLT1J2 LTR MaLR 1 155 -291 274 128 26 115 chr12 72665395 72665473 -71617016 + MLT1J2 LTR MaLR 350 420 -30 2103 102 7 3 chr12 72665486 72665792 -71616697 - AluSq SINE Alu 0 307 1 242 274 239 10 chr12 72666727 72666924 -71615565 - L2 LINE L2 -214 3058 2817 2262 186 28 13 chr12 72666974 72667432 -71615057 - MLT1C LTR MaLR 0 467 3 352 212 161 17 chr12 72667607 72667725 -71614764 + MIR SINE MIR 110 244 -18 1646 194 0 7 chr12 72668425 72668713 -71613776 + AluJo SINE Alu 5 290 -22 481 306 153 25 chr12 72669537 72669772 -71612717 + L2 LINE L2 3008 3272 0 213 284 30 0 chr12 72670312 72670379 -71612110 + (TG)n Simple_repeat Simple_repeat 2 70 0 225 132 0 0 chr12 72671394 72671432 -71611057 + (TG)n Simple_repeat Simple_repeat 1 38 0 973 203 54 54 chr12 72672739 72673035 -71609454 - MER47A DNA MER2_type -70 296 1 310 291 18 9 chr12 72673492 72673602 -71608887 + GA-rich Low_complexity Low_complexity 4 114 0 269 188 125 54 chr12 72674273 72674385 -71608104 + L1ME4a LINE L1 5967 6086 -35 2310 120 0 3 chr12 72674568 72674877 -71607612 - AluSg SINE Alu -2 308 1 721 223 158 11 chr12 72675232 72675510 -71606979 + MER33 DNA MER1_type 5 323 -1 301 321 55 0 chr12 72677015 72677124 -71605365 + L2 LINE L2 2778 2892 -422 206 194 0 0 chr12 72677125 72677161 -71605328 - L2 LINE L2 -94 3219 3184 576 311 66 59 chr12 72677476 72677868 -71604621 - L2 LINE L2 -47 3225 2831 258 56 0 0 chr12 72678091 72678127 -71604362 + (TA)n Simple_repeat Simple_repeat 2 37 0 248 287 111 9 chr12 72678309 72678417 -71604072 - MER103 DNA DNA -47 119 1 207 0 0 0 chr12 72679823 72679846 -71602643 + (A)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr12 72680238 72680262 -71602227 + (A)n Simple_repeat Simple_repeat 1 24 0 206 248 209 48 chr12 72680735 72680840 -71601649 - L2 LINE L2 0 3272 3151 354 339 47 6 chr12 72682327 72682498 -71599991 - MIR SINE MIR -6 256 79 484 375 56 12 chr12 72682566 72682889 -71599600 - L2 LINE L2 -56 3257 2921 692 328 111 46 chr12 72682911 72683481 -71599008 + L1M4 LINE L1 3714 4320 -1826 1047 124 40 27 chr12 72683496 72683727 -71598762 - L1P LINE L1 -746 5408 5183 2747 103 47 43 chr12 72683727 72684241 -71598248 + L1MA8 LINE L1 5771 6286 -5 21 0 0 0 chr12 72684247 72684268 -71598221 + AT_rich Low_complexity Low_complexity 1 21 0 27014 35 17 1 chr12 72684277 72690293 -71592196 - L1PA2 LINE L1 -5 6150 1 3843 17 17 0 chr12 72690320 72690740 -71591749 - L1PA2 LINE L1 0 6155 5729 412 37 0 0 chr12 72690740 72690794 -71591695 + L1P LINE L1 5296 5349 -806 294 231 126 45 chr12 72690926 72691125 -71591364 + L1ME4a LINE L1 5687 5901 -220 318 301 15 0 chr12 72691178 72691314 -71591175 + (TA)n Simple_repeat Simple_repeat 1 138 0 188 111 28 0 chr12 72691330 72691366 -71591123 + (TA)n Simple_repeat Simple_repeat 2 38 0 1043 261 81 109 chr12 72692858 72693237 -71589252 + L2 LINE L2 2304 2692 -621 1941 140 7 14 chr12 72693237 72693529 -71588960 + AluSx SINE Alu 1 290 -22 1043 261 81 109 chr12 72693529 72694155 -71588334 + L2 LINE L2 2692 3304 -9 290 148 19 0 chr12 72694155 72694209 -71588280 + L1MB8 LINE L1 6110 6164 -14 3616 125 8 6 chr12 72694209 72694730 -71587759 + L1PB4 LINE L1 5628 6149 -7 486 234 127 54 chr12 72694946 72695151 -71587338 - MIR SINE MIR -2 260 41 250 281 79 0 chr12 72696019 72696108 -71586381 - MIR SINE MIR -56 206 111 969 198 56 0 chr12 72696221 72696418 -71586071 - MER3 DNA MER1_type 0 209 2 321 344 122 8 chr12 72696719 72696850 -71585639 - MIR3 SINE MIR -57 151 6 1680 134 50 8 chr12 72699911 72700173 -71582316 - AluSq SINE Alu 0 313 41 378 274 40 99 chr12 72700485 72700597 -71581892 - MIR SINE MIR -3 259 142 1892 135 34 10 chr12 72700597 72700894 -71581595 - AluSx SINE Alu -8 304 1 378 274 40 99 chr12 72700894 72700923 -71581566 - MIR SINE MIR -120 142 113 1926 128 57 0 chr12 72700923 72701219 -71581270 + AluSp SINE Alu 1 313 0 378 274 40 99 chr12 72701219 72701299 -71581190 - MIR SINE MIR -149 113 50 196 325 167 30 chr12 72701380 72701752 -71580737 + L2 LINE L2 2301 2723 -591 371 259 56 0 chr12 72701768 72701876 -71580613 - MIR SINE MIR -136 126 13 206 390 76 12 chr12 72702394 72702566 -71579923 - MIR SINE MIR -60 202 20 1825 199 16 0 chr12 72702601 72702967 -71579522 - L1MD3 LINE L1 0 7995 7624 196 304 0 0 chr12 72703550 72703596 -71578893 + L2 LINE L2 3209 3254 -18 711 244 183 5 chr12 72703613 72703826 -71578663 - MIR SINE MIR -10 252 2 558 245 76 21 chr12 72706675 72706860 -71575629 - MIR SINE MIR -62 146 1 419 311 122 14 chr12 72707274 72707496 -71574993 - MIR SINE MIR -4 258 13 642 248 52 0 chr12 72709724 72709877 -71572612 - MIR SINE MIR -88 174 14 362 254 76 25 chr12 72710109 72710227 -71572262 - MIR SINE MIR -79 183 60 16449 189 33 28 chr12 72710334 72710731 -71571758 - MER21-int LTR ERV1 -59 4132 3739 459 0 0 0 chr12 72710731 72710782 -71571707 + (CATA)n Simple_repeat Simple_repeat 2 52 0 16449 189 33 28 chr12 72710782 72712874 -71569615 - MER21-int LTR ERV1 -452 3739 1620 2562 69 0 0 chr12 72712874 72713180 -71569309 - AluY SINE Alu -5 306 1 16449 189 33 28 chr12 72713180 72713928 -71568561 - MER21-int LTR ERV1 -2571 1620 877 1383 167 54 8 chr12 72713958 72714216 -71568273 - MSTA LTR MaLR 0 428 159 195 100 0 0 chr12 72714250 72714280 -71568209 + (TCTCCC)n Simple_repeat Simple_repeat 1 30 0 2190 116 0 0 chr12 72714280 72714565 -71567924 - AluSg SINE Alu -25 285 1 188 242 101 81 chr12 72714725 72714874 -71567615 + L2 LINE L2 3160 3311 -2 22 0 0 0 chr12 72714891 72714913 -71567576 + AT_rich Low_complexity Low_complexity 1 22 0 2197 89 20 3 chr12 72715197 72715489 -71567000 + AluY SINE Alu 1 297 -14 322 289 47 87 chr12 72715569 72715651 -71566838 + L2 LINE L2 3126 3201 -71 1025 230 145 69 chr12 72715651 72716204 -71566285 - MLT1G1 LTR MaLR 0 595 1 322 289 47 87 chr12 72716204 72716270 -71566219 + L2 LINE L2 3201 3268 -4 234 0 0 0 chr12 72716843 72716869 -71565620 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1035 175 0 0 chr12 72717064 72717230 -71565259 + FRAM SINE Alu 9 174 -2 373 259 35 17 chr12 72717369 72717485 -71565004 + MER103 DNA DNA 28 145 -21 4828 126 64 7 chr12 72717942 72718679 -71563810 + MER4E LTR ERV1 1 779 0 428 298 32 106 chr12 72718928 72719371 -71563118 - MLT1J LTR MaLR -3 508 99 1797 116 30 4 chr12 72719883 72720150 -71562339 + MER4E LTR ERV1 1 274 -505 32772 104 16 58 chr12 72720165 72726590 -71555899 + L1PA7 LINE L1 12 6153 -1 1082 241 0 0 chr12 72726611 72726814 -71555675 + MLT1A1 LTR MaLR 163 365 0 2800 134 61 51 chr12 72726860 72727367 -71555122 + MER4E LTR ERV1 266 777 -2 183 247 59 94 chr12 72727431 72727516 -71554973 + MIR SINE MIR 23 104 -104 2086 245 54 38 chr12 72727536 72728096 -71554393 - MLT1E LTR MaLR 0 593 25 271 250 10 110 chr12 72728222 72728322 -71554167 + L2 LINE L2 3199 3288 -25 500 247 73 40 chr12 72728327 72728477 -71554012 - L2 LINE L2 -1 3312 3158 189 319 76 42 chr12 72729148 72729267 -71553222 - L2 LINE L2 -836 2478 2356 2409 88 3 0 chr12 72729479 72729776 -71552713 + AluSp SINE Alu 1 298 -15 462 238 40 69 chr12 72730286 72730342 -71552147 - L1MEd LINE L1 -2622 3507 3451 1372 221 44 49 chr12 72730342 72730709 -71551780 + MLT1A1 LTR MaLR 1 365 0 462 238 40 69 chr12 72730709 72730929 -71551560 - L1MEd LINE L1 -2678 3451 3239 1382 285 76 37 chr12 72730970 72731166 -71551323 - L1MEd LINE L1 -3002 3127 2940 1021 173 0 58 chr12 72731166 72731339 -71551150 + FRAM SINE Alu 1 163 -3 1382 285 76 37 chr12 72731339 72731778 -71550711 - L1MEd LINE L1 -3189 2940 2519 1766 144 24 17 chr12 72731778 72732070 -71550419 - AluJb SINE Alu -14 298 5 1382 285 76 37 chr12 72732070 72732510 -71549979 - L1MEd LINE L1 -3610 2519 2034 792 283 118 42 chr12 72732602 72732835 -71549654 - L1MEd LINE L1 -4574 1736 1522 2310 80 3 3 chr12 72732835 72733136 -71549353 + AluY SINE Alu 1 301 -10 792 283 118 42 chr12 72733136 72734006 -71548483 - L1MEd LINE L1 -4788 1522 509 391 342 9 9 chr12 72734607 72734721 -71547768 - L2 LINE L2 0 3313 3200 892 237 43 132 chr12 72734816 72735416 -71547073 - LTR67 LTR ERVL -6 551 5 498 297 14 7 chr12 72735558 72735706 -71546783 - MIR SINE MIR -113 149 1 24 32 0 0 chr12 72736730 72736761 -71545728 + AT_rich Low_complexity Low_complexity 1 31 0 567 276 124 4 chr12 72739292 72739517 -71542972 - MLT1H1 LTR MaLR 0 555 304 1285 154 87 47 chr12 72740325 72740578 -71541911 - AluJb SINE Alu -49 263 1 40822 33 23 1 chr12 72740680 72746696 -71535793 + L1PA3 LINE L1 8 6155 0 581 234 89 124 chr12 72746835 72747092 -71535397 - MIR SINE MIR -1 261 14 231 304 59 49 chr12 72747220 72747322 -71535167 - MIR SINE MIR -6 256 154 1124 258 4 0 chr12 72748182 72748415 -71534074 + MIR SINE MIR 2 235 -27 5912 229 65 46 chr12 72749082 72751792 -71530697 + L1MA4 LINE L1 1 2810 -4399 * 14376 174 26 8 chr12 72751788 72755942 -71526547 + L1MA4 LINE L1 3134 7359 -3 569 279 68 48 chr12 72755950 72756391 -71526098 + HAL1 LINE L1 1116 1565 -942 694 305 62 4 chr12 72756726 72756952 -71525537 + MIR SINE MIR 10 248 -14 761 257 30 30 chr12 72757984 72758221 -71524268 - MIR SINE MIR -10 252 16 399 290 183 0 chr12 72758508 72758677 -71523812 + MIR SINE MIR 57 256 -6 553 307 108 22 chr12 72758989 72759220 -71523269 - MIR SINE MIR -2 260 10 2473 28 42 0 chr12 72759238 72759527 -71522962 + AluY SINE Alu 1 301 -10 671 162 27 9 chr12 72761064 72761175 -71521314 + FLAM_C SINE Alu 14 126 -17 329 291 159 18 chr12 72761277 72761504 -71520985 - MIR SINE MIR -3 259 1 313 211 200 0 chr12 72762948 72763038 -71519451 + L2 LINE L2 3200 3307 -6 227 254 60 0 chr12 72763055 72763122 -71519367 + L3 LINE CR1 1500 1570 -7 553 269 77 0 chr12 72763352 72763508 -71518981 + MIR SINE MIR 12 179 -83 213 307 0 40 chr12 72763766 72763841 -71518648 - L3b LINE CR1 -300 1283 1212 215 239 68 94 chr12 72764773 72764890 -71517599 + MIR SINE MIR 148 261 -1 739 292 28 12 chr12 72764893 72765143 -71517346 + MIR SINE MIR 8 261 -1 244 265 218 34 chr12 72765681 72765828 -71516661 - MIR3 SINE MIR -31 177 4 329 292 0 0 chr12 72766604 72766693 -71515796 - L1MC4 LINE L1 -1340 6702 6614 303 300 0 0 chr12 72766641 72766731 -71515758 + L1MC4 LINE L1 6614 6703 -1339 * 265 70 58 35 chr12 72766746 72766832 -71515657 + (TA)n Simple_repeat Simple_repeat 1 88 0 196 350 0 0 chr12 72767003 72767063 -71515426 + L3b LINE CR1 1196 1255 -328 22 35 0 0 chr12 72767691 72767720 -71514769 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr12 72768581 72768606 -71513883 + AT_rich Low_complexity Low_complexity 1 25 0 429 340 155 10 chr12 72768987 72769375 -71513114 - L2 LINE L2 -641 2673 2230 769 269 83 0 chr12 72769397 72769613 -71512876 - MIR SINE MIR -21 241 8 515 273 36 67 chr12 72770372 72770566 -71511923 + MIR SINE MIR 2 189 -73 2360 98 0 0 chr12 72770624 72770929 -71511560 - AluSx SINE Alu -7 305 1 1945 233 131 8 chr12 72771120 72771151 -71511338 - MLT2F LTR ERVL 0 663 637 441 0 0 0 chr12 72771151 72771200 -71511289 + (TG)n Simple_repeat Simple_repeat 2 50 0 1945 233 131 8 chr12 72771200 72771757 -71510732 - MLT2F LTR ERVL -26 637 3 251 278 120 53 chr12 72771786 72771919 -71510570 - MIR SINE MIR -35 227 86 22 56 0 0 chr12 72772180 72772216 -71510273 + AT_rich Low_complexity Low_complexity 1 36 0 2336 268 83 36 chr12 72772541 72773362 -71509127 + L1ME LINE L1 55 836 -5244 2719 148 86 30 chr12 72773362 72773897 -71508592 + MER34B LTR ERV1 1 565 0 2336 268 83 36 chr12 72773897 72774614 -71507875 + L1ME LINE L1 836 1646 -4434 1709 229 117 30 chr12 72774697 72775219 -71507270 - MER77 LTR ERV1 -3 602 55 416 276 72 94 chr12 72775245 72775608 -71506881 + L1ME LINE L1 1729 2083 -4178 370 248 33 20 chr12 72775678 72775831 -71506658 + L1ME LINE L1 2117 2271 -3809 3774 140 33 44 chr12 72775877 72775917 -71506572 + L1MB2 LINE L1 5448 5487 -684 2059 124 7 0 chr12 72775917 72776229 -71506260 + AluSx SINE Alu 1 314 0 3774 140 33 44 chr12 72776229 72776302 -71506187 + L1MB2 LINE L1 5487 5559 -612 2057 114 80 9 chr12 72776302 72776652 -71505837 + THE1C LTR MaLR 1 375 0 3774 140 33 44 chr12 72776652 72777265 -71505224 + L1MB2 LINE L1 5559 6168 -3 1829 257 68 13 chr12 72777271 72777952 -71504537 + L1ME LINE L1 2252 2969 -3111 637 181 3 0 chr12 72777965 72778091 -71504398 + Tigger3(Golem) DNA MER2_type 1 128 -2901 458 84 0 28 chr12 72778071 72778142 -71504347 + Tigger3(Golem) DNA MER2_type 2285 2353 -676 * 2776 104 39 20 chr12 72778149 72778609 -71503880 + Tigger3(Golem) DNA MER2_type 2506 2974 -55 627 252 155 39 chr12 72778668 72778977 -71503512 + MLT1J2 LTR MaLR 85 429 -21 1308 298 63 18 chr12 72780073 72780516 -71501973 + LTR16B LTR ERVL 1 463 -1 2465 66 0 3 chr12 72781490 72781791 -71500698 + AluY SINE Alu 1 300 -11 186 244 73 0 chr12 72782486 72782527 -71499962 - L3 LINE CR1 -94 1483 1440 554 309 26 16 chr12 72783146 72783340 -71499149 - MIR SINE MIR -54 208 13 223 426 0 0 chr12 72783930 72784078 -71498411 + L2 LINE L2 2189 2336 -978 371 286 36 9 chr12 72784208 72784320 -71498169 + L2 LINE L2 3167 3281 -32 229 189 57 0 chr12 72784320 72784373 -71498116 + GA-rich Low_complexity Low_complexity 3 58 0 221 254 17 17 chr12 72784374 72784433 -71498056 + L2 LINE L2 3210 3268 -4 247 177 32 0 chr12 72784455 72784517 -71497972 + GA-rich Low_complexity Low_complexity 4 67 0 2135 105 44 36 chr12 72784637 72784998 -71497491 + THE1B LTR MaLR 1 364 0 323 314 59 96 chr12 72785416 72785823 -71496666 + L2 LINE L2 2877 3268 -4 273 250 36 36 chr12 72786388 72786472 -71496017 + L2 LINE L2 3185 3268 -4 1069 195 69 106 chr12 72786871 72787250 -71495239 + MLT1A1 LTR MaLR 1 365 0 703 294 153 17 chr12 72787425 72787837 -71494652 + LTR33 LTR ERVL 27 494 -27 756 335 161 25 chr12 72787852 72788372 -71494117 - L2 LINE L2 -527 2787 2197 44 0 0 0 chr12 72789049 72789093 -71493396 + AT_rich Low_complexity Low_complexity 1 44 0 516 250 47 62 chr12 72789133 72789325 -71493164 + MER112 DNA MER1_type 65 253 -7 337 321 29 43 chr12 72789963 72790103 -71492386 + MIR SINE MIR 19 156 -106 463 250 43 0 chr12 72790183 72790299 -71492190 + MIR SINE MIR 138 258 -4 243 103 0 0 chr12 72790345 72790384 -71492105 + (CA)n Simple_repeat Simple_repeat 2 40 0 802 194 0 8 chr12 72790501 72790635 -71491854 - FLAM_A SINE Alu 0 133 1 1787 162 53 66 chr12 72790732 72791127 -71491362 - MLT1B LTR MaLR 0 390 1 265 223 0 45 chr12 72791944 72792101 -71490388 + GA-rich Low_complexity Low_complexity 3 152 0 207 0 0 0 chr12 72793416 72793439 -71489050 + (A)n Simple_repeat Simple_repeat 1 23 0 345 365 67 17 chr12 72793978 72794216 -71488273 + L1ME4a LINE L1 5634 5883 -238 881 105 0 0 chr12 72794347 72794461 -71488028 - L1PA10 LINE L1 -1 6167 6054 191 296 0 0 chr12 72794946 72794990 -71487499 + L2 LINE L2 3257 3300 -13 916 216 18 53 chr12 72795219 72795446 -71487043 + MER20 DNA MER1_type 1 219 0 203 302 10 42 chr12 72795584 72795680 -71486809 + MIR SINE MIR 109 201 -61 213 39 0 0 chr12 72796307 72796333 -71486156 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 398 34 136 0 chr12 72796339 72796398 -71486091 - L1PA13 LINE L1 -19 6144 6078 412 138 0 0 chr12 72796398 72796463 -71486026 - L1MB3 LINE L1 -68 6115 6051 5516 107 3 4 chr12 72796472 72797218 -71485271 - L1PA13 LINE L1 0 6163 5419 3814 146 584 15 chr12 72797738 72798948 -71483541 + L1P LINE L1 11 1909 -4237 222 326 53 30 chr12 72799193 72799325 -71483164 - L2 LINE L2 -1 3312 3178 304 245 99 17 chr12 72799352 72799571 -71482918 + Charlie7 DNA MER1_type 7 2577 -35 21 36 0 0 chr12 72801265 72801293 -71481196 + AT_rich Low_complexity Low_complexity 1 28 0 654 286 74 9 chr12 72802142 72802359 -71480130 - L3 LINE CR1 -8 1569 1339 401 271 188 102 chr12 72802568 72802898 -71479591 + L3 LINE CR1 803 1200 -377 2807 120 43 19 chr12 72802898 72803316 -71479173 - MSTC LTR MaLR 0 428 1 401 271 188 102 chr12 72803316 72803534 -71478955 + L3 LINE CR1 1200 1398 -179 229 280 110 10 chr12 72803639 72803739 -71478750 - L2 LINE L2 -14 3299 3190 218 250 17 17 chr12 72803743 72803803 -71478686 + MIR3 SINE MIR 144 203 -5 218 247 284 0 chr12 72803928 72804009 -71478480 - L2 LINE L2 -16 3256 3153 629 226 15 8 chr12 72804073 72804206 -71478283 + MER94 DNA DNA 1 134 0 309 237 0 0 chr12 72804636 72804712 -71477777 + MLT1K LTR MaLR 509 584 -4 659 343 82 14 chr12 72805099 72805525 -71476964 + L2 LINE L2 1932 2386 -928 432 309 96 11 chr12 72806446 72806634 -71475855 - MIR SINE MIR -28 234 31 442 118 21 0 chr12 72807907 72808000 -71474489 + (TA)n Simple_repeat Simple_repeat 1 95 0 2966 86 18 5 chr12 72808008 72808403 -71474086 - MLT2A1 LTR ERVL -44 400 1 605 242 55 11 chr12 72808403 72808585 -71473904 - L2 LINE L2 -1128 2186 1997 395 296 97 11 chr12 72808612 72808798 -71473691 - MIR SINE MIR -1 261 60 360 217 14 0 chr12 72808816 72808885 -71473604 + L2 LINE L2 1106 1175 -2139 4679 247 48 92 chr12 72808942 72809036 -71473453 - L2 LINE L2 0 3313 3216 2325 91 3 0 chr12 72809036 72809332 -71473157 + AluY SINE Alu 1 297 -14 4679 247 48 92 chr12 72809332 72809996 -71472493 - L2 LINE L2 -97 3216 2524 2076 121 0 27 chr12 72809996 72810132 -71472357 + AluSx SINE Alu 1 139 -173 2323 67 0 58 chr12 72810132 72810461 -71472028 + AluY SINE Alu 1 310 -1 2076 121 0 27 chr12 72810461 72810621 -71471868 + AluSx SINE Alu 139 289 -23 4679 247 48 92 chr12 72810621 72811446 -71471043 - L2 LINE L2 -789 2524 1664 782 128 0 0 chr12 72811446 72811563 -71470926 - AluSg/x SINE Alu -3 307 191 4679 247 48 92 chr12 72811563 72811966 -71470523 - L2 LINE L2 -1649 1664 1315 2393 62 7 7 chr12 72811966 72812275 -71470214 + AluY SINE Alu 3 311 0 4679 247 48 92 chr12 72812275 72812443 -71470046 - L2 LINE L2 -1998 1315 1141 1092 300 110 67 chr12 72812445 72812580 -71469909 - L2 LINE L2 -1428 1886 1758 2089 126 20 0 chr12 72812580 72812874 -71469615 + AluSx SINE Alu 1 300 -12 1092 300 110 67 chr12 72812874 72813161 -71469328 - L2 LINE L2 -1556 1758 1485 2191 122 3 0 chr12 72813161 72813464 -71469025 - AluSq SINE Alu -9 304 1 1092 300 110 67 chr12 72813464 72813494 -71468995 - L2 LINE L2 -1829 1485 1458 4006 136 34 9 chr12 72813494 72814149 -71468340 - L1MA8 LINE L1 -1 6290 5620 1092 300 110 67 chr12 72814149 72814430 -71468059 - L2 LINE L2 -1856 1458 1119 255 261 292 0 chr12 72815212 72815342 -71467147 + L2 LINE L2 3121 3288 -25 450 297 131 42 chr12 72815473 72815709 -71466780 + MIR SINE MIR 5 261 -1 295 192 26 0 chr12 72816724 72816802 -71465687 + GA-rich Low_complexity Low_complexity 1 80 0 3728 51 0 7 chr12 72818155 72818606 -71463883 + LTR7 LTR ERV1 1 448 -2 20815 84 30 8 chr12 72818608 72821540 -71460949 + HERVH LTR ERV1 1 2995 -4718 1007 113 7 0 chr12 72821519 72821669 -71460820 + HERVH LTR ERV1 3140 3290 -4423 * 3432 112 0 14 chr12 72821659 72822168 -71460321 + HERVH LTR ERV1 3492 3993 -3720 2635 163 69 0 chr12 72822207 72822643 -71459846 + HERVH LTR ERV1 4681 5146 -2567 1449 108 18 31 chr12 72822650 72822873 -71459616 + HERVH LTR ERV1 5600 5819 -1894 * 2329 91 64 16 chr12 72822871 72823245 -71459244 + HERVH LTR ERV1 7322 7713 0 3759 51 0 7 chr12 72823245 72823698 -71458791 + LTR7 LTR ERV1 1 450 0 4133 117 54 66 chr12 72823723 72824422 -71458067 - LTR8 LTR ERV1 0 691 1 875 205 0 25 chr12 72825917 72826078 -71456411 + FRAM SINE Alu 1 157 -19 23 0 0 0 chr12 72826414 72826437 -71456052 + AT_rich Low_complexity Low_complexity 1 23 0 379 289 108 45 chr12 72826455 72826964 -71455525 - L2 LINE L2 -5 3308 2709 498 122 27 0 chr12 72827320 72827394 -71455095 - MER1B DNA MER1_type 0 333 258 1743 140 7 22 chr12 72827453 72827731 -71454758 - MER1B DNA MER1_type -64 275 2 392 273 144 18 chr12 72829302 72829747 -71452742 + LTR33 LTR ERVL 5 521 0 1442 199 72 19 chr12 72830079 72830440 -71452049 - LTR25 LTR ERV1 0 794 415 324 159 143 0 chr12 72830411 72830474 -71452015 - MER51A LTR ERV1 -354 280 209 * 527 134 39 9 chr12 72830640 72830751 -71451738 - MER61E LTR ERV1 -484 85 1 265 294 24 12 chr12 72830875 72830960 -71451529 + GA-rich Low_complexity Low_complexity 3 88 0 422 226 18 97 chr12 72831107 72831324 -71451165 + L2 LINE L2 3039 3238 -75 2618 137 28 24 chr12 72831986 72832410 -71450079 - MSTC LTR MaLR -2 426 1 224 197 30 45 chr12 72833155 72833221 -71449268 + MER5B DNA MER1_type 33 97 -81 321 26 0 0 chr12 72833918 72833956 -71448533 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 107 0 0 chr12 72834439 72834467 -71448022 + (TTA)n Simple_repeat Simple_repeat 1 28 0 227 103 26 0 chr12 72836086 72836125 -71446364 + (TG)n Simple_repeat Simple_repeat 1 40 0 2271 105 3 0 chr12 72837099 72837393 -71445096 + AluSx SINE Alu 1 295 -17 655 277 89 0 chr12 72837847 72838060 -71444429 - MIR SINE MIR 0 262 31 188 353 35 35 chr12 72838187 72838303 -71444186 + L2 LINE L2 3153 3268 -4 2382 203 10 43 chr12 72840407 72840891 -71441598 - MLT2B3 LTR ERVL -4 550 83 514 127 0 0 chr12 72840975 72841046 -71441443 - MLT2B3 LTR ERVL -483 71 1 224 281 0 0 chr12 72841411 72841468 -71441021 - MIR SINE MIR -96 166 110 375 374 30 21 chr12 72841642 72842071 -71440418 + MLT1L LTR MaLR 154 613 -2 407 336 14 7 chr12 72842154 72842297 -71440192 - MIR SINE MIR -110 152 9 344 281 174 16 chr12 72842995 72843116 -71439373 - MER91C DNA MER1_type 0 140 1 1513 190 3 104 chr12 72843176 72843503 -71438986 + AluJo SINE Alu 2 295 -7 459 282 51 88 chr12 72843635 72843851 -71438638 + MIR SINE MIR 49 256 -6 269 250 118 14 chr12 72844014 72844158 -71438331 - MER103 DNA DNA 0 166 8 180 143 0 0 chr12 72844477 72844505 -71437984 - L2 LINE L2 -14 3299 3272 308 161 0 54 chr12 72845300 72845356 -71437133 + MSTA LTR MaLR 1 53 -373 844 76 0 0 chr12 72845356 72845461 -71437028 + AluSg/x SINE Alu 194 298 -11 2102 160 79 3 chr12 72845461 72845611 -71436878 + MSTA LTR MaLR 46 183 -245 186 43 0 0 chr12 72845611 72845634 -71436855 + (TC)n Simple_repeat Simple_repeat 1 23 0 2102 160 79 3 chr12 72845634 72845839 -71436650 + MSTA LTR MaLR 183 428 0 1629 199 61 15 chr12 72846384 72846710 -71435779 - MER58B DNA MER1_type 0 341 1 331 288 44 38 chr12 72846748 72846908 -71435581 + MIR SINE MIR 52 212 -50 264 300 122 38 chr12 72847197 72847434 -71435055 + L2 LINE L2 2232 2488 -826 205 312 110 46 chr12 72847767 72847876 -71434613 + L2 LINE L2 2933 3048 -224 1092 188 84 0 chr12 72848001 72848203 -71434286 + MER20 DNA MER1_type 1 219 0 3841 134 2 4 chr12 72848218 72848746 -71433743 - MER1A DNA MER1_type 0 527 1 194 282 26 13 chr12 72848780 72848858 -71433631 + L2 LINE L2 3234 3312 -1 2417 90 0 3 chr12 72849973 72850283 -71432206 + AluSg SINE Alu 1 309 -1 25 51 0 0 chr12 72850408 72850447 -71432042 + AT_rich Low_complexity Low_complexity 1 39 0 2222 98 0 23 chr12 72850736 72851041 -71431448 - AluSg SINE Alu -12 298 1 840 221 39 34 chr12 72851119 72851327 -71431162 - MIR SINE MIR -34 228 20 1924 138 7 0 chr12 72851408 72851714 -71430775 + AluSx SINE Alu 1 308 0 254 247 22 11 chr12 72851820 72851909 -71430580 + (TA)n Simple_repeat Simple_repeat 2 91 0 250 257 19 57 chr12 72851973 72852078 -71430411 + MIR SINE MIR 96 196 -66 2160 33 3 106 chr12 72852115 72852450 -71430039 + AluY SINE Alu 13 316 0 435 219 91 151 chr12 72853115 72853498 -71428991 - L2 LINE L2 -3 3310 2951 2192 158 42 73 chr12 72853560 72854042 -71428447 - MLT1C LTR MaLR 0 467 1 263 194 65 32 chr12 72854081 72854143 -71428346 + MIR SINE MIR 199 262 0 1060 250 41 90 chr12 72854182 72854659 -71427830 + L2 LINE L2 2693 3128 -185 324 0 0 0 chr12 72854659 72854695 -71427794 + (CA)n Simple_repeat Simple_repeat 1 36 0 1060 250 41 90 chr12 72854695 72854873 -71427616 + L2 LINE L2 3128 3313 0 544 325 48 0 chr12 72855451 72855679 -71426810 + MARNA DNA Mariner 251 489 -97 30 0 0 0 chr12 72857071 72857101 -71425388 + AT_rich Low_complexity Low_complexity 1 30 0 948 285 122 24 chr12 72857205 72857328 -71425161 - L2 LINE L2 -2 3311 3201 234 0 0 0 chr12 72857328 72857354 -71425135 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 948 285 122 24 chr12 72857354 72857647 -71424842 - L2 LINE L2 -112 3201 2854 535 260 121 27 chr12 72858108 72858331 -71424158 - MLT1K LTR MaLR -17 571 328 1693 211 51 33 chr12 72858341 72858792 -71423697 + MLT1C LTR MaLR 9 467 0 285 259 43 52 chr12 72859100 72859216 -71423273 - MLT1L LTR MaLR -6 605 468 316 269 104 50 chr12 72859526 72859727 -71422762 - MLT1L LTR MaLR -402 213 2 1910 166 83 41 chr12 72860774 72861185 -71421304 + MSTC LTR MaLR 1 428 0 820 282 38 0 chr12 72861903 72862124 -71420365 + MIR SINE MIR 36 261 -1 4337 182 45 20 chr12 72862796 72863627 -71418862 + MER21B LTR ERV1 12 862 -1 307 234 36 36 chr12 72864245 72864356 -71418133 - HAL1b LINE L1 0 1348 1238 230 241 63 13 chr12 72866573 72866652 -71415837 - MIR3 SINE MIR -1 207 125 2081 128 13 3 chr12 72866673 72866979 -71415510 - AluJb SINE Alu -3 309 1 330 127 18 0 chr12 72868503 72868558 -71413931 + MER5A DNA MER1_type 48 103 -86 213 209 0 0 chr12 72868565 72868608 -71413881 + L2 LINE L2 3261 3303 -10 349 347 58 26 chr12 72869405 72869595 -71412894 + MIR SINE MIR 66 261 -1 300 192 154 115 chr12 72869857 72870013 -71412476 + MLT1L LTR MaLR 40 201 -414 505 316 75 14 chr12 72870094 72870489 -71412000 + LTR16B LTR ERVL 2 463 -1 305 263 0 0 chr12 72870629 72870705 -71411784 - L3 LINE CR1 -353 1224 1149 5324 110 98 72 chr12 72870705 72871827 -71410662 + pTR5 LTR ERV1 743 2025 -413 371 199 56 74 chr12 72871827 72871935 -71410554 + LTR30 LTR ERV1 372 475 -94 1540 93 5 0 chr12 72871935 72872151 -71410338 + pTR5 LTR ERV1 178 394 -2044 527 264 154 0 chr12 72872378 72872579 -71409910 + MIR SINE MIR 21 252 -10 2435 65 0 32 chr12 72872581 72872891 -71409598 - AluY SINE Alu -11 300 1 2012 155 0 0 chr12 72872892 72873188 -71409301 - AluJo SINE Alu -15 297 2 1532 211 87 0 chr12 72873458 72873770 -71408719 - MER58B DNA MER1_type -2 339 1 21 36 0 0 chr12 72874260 72874288 -71408201 + AT_rich Low_complexity Low_complexity 1 28 0 580 238 34 72 chr12 72874515 72874866 -71407623 - MLT1J LTR MaLR -18 493 100 202 149 64 0 chr12 72875719 72875766 -71406723 + T-rich Low_complexity Low_complexity 2 51 0 2650 117 8 8 chr12 72875766 72876167 -71406322 - LTR9B LTR ERV1 -84 560 160 6167 120 40 2 chr12 72876168 72877061 -71405428 - HUERS-P3b LTR ERV1 -410 7008 6082 1266 104 21 10 chr12 72877100 72877292 -71405197 - LTR9B LTR ERV1 0 644 451 2222 117 7 0 chr12 72877408 72877579 -71404910 - AluSx SINE Alu -10 302 127 279 0 0 0 chr12 72877579 72877610 -71404879 + (TG)n Simple_repeat Simple_repeat 2 32 0 2222 117 7 0 chr12 72877610 72877737 -71404752 - AluSx SINE Alu -185 127 2 1804 85 0 50 chr12 72878917 72879177 -71403312 + AluSq SINE Alu 47 293 -20 216 315 174 33 chr12 72879190 72879374 -71403115 - MIR SINE MIR -4 258 49 811 286 29 12 chr12 72880655 72880900 -71401589 + MLT1F LTR MaLR 1 249 -293 575 221 64 52 chr12 72880887 72881059 -71401430 + MLT1F LTR MaLR 394 567 0 * 945 178 35 6 chr12 72881878 72882047 -71400442 - MER45A DNA AcHobo -4 174 1 303 290 103 19 chr12 72882254 72882391 -71400098 - MIR SINE MIR -60 148 28 2124 99 46 0 chr12 72882831 72883115 -71399374 + AluSq SINE Alu 1 297 -16 239 230 30 10 chr12 72883715 72883815 -71398674 + (TATAA)n Simple_repeat Simple_repeat 3 104 0 453 149 47 9 chr12 72885971 72886078 -71396411 + L1M3 LINE L1 4965 5075 -1071 310 228 153 45 chr12 72886157 72886359 -71396130 + L1ME3A LINE L1 5944 6167 -3 2634 138 28 28 chr12 72887252 72887678 -71394811 - MSTB LTR MaLR 0 426 1 1628 211 158 28 chr12 72887779 72888324 -71394165 - MLT1E2 LTR MaLR 0 626 11 1017 233 59 17 chr12 72888798 72889143 -71393346 + L1M3 LINE L1 5077 5439 -741 793 155 62 0 chr12 72889183 72889312 -71393177 + FRAM SINE Alu 22 158 -18 2164 194 47 47 chr12 72889319 72889849 -71392640 + L1ME3A LINE L1 5430 5959 -211 319 38 0 12 chr12 72889858 72889903 -71392586 + MADE1 DNA Mariner 6 42 -38 394 55 0 266 chr12 72889935 72890044 -71392445 + MADE1 DNA Mariner 1 80 0 712 260 36 0 chr12 72890045 72890241 -71392248 + L1ME3A LINE L1 5963 6165 -5 198 290 172 21 chr12 72890283 72890376 -71392113 + L2 LINE L2 3164 3270 -2 326 268 142 33 chr12 72890571 72890754 -71391735 - MIR SINE MIR -10 252 50 690 186 28 126 chr12 72892639 72892886 -71389603 - MER58A DNA MER1_type -1 223 1 22 35 0 0 chr12 72892983 72893012 -71389477 + AT_rich Low_complexity Low_complexity 1 29 0 1787 159 0 48 chr12 72893477 72893792 -71388697 - AluJo SINE Alu 0 312 13 667 270 140 72 chr12 72894448 72894904 -71387585 - L2 LINE L2 0 3313 2827 187 304 38 25 chr12 72895050 72895129 -71387360 + MIR SINE MIR 112 191 -71 205 200 0 0 chr12 72895184 72895224 -71387265 - L2 LINE L2 -9 3304 3265 229 313 10 20 chr12 72895240 72895339 -71387150 + GA-rich Low_complexity Low_complexity 5 102 0 568 299 78 4 chr12 72895360 72895591 -71386898 + MIR SINE MIR 10 257 -5 450 319 61 23 chr12 72896326 72896589 -71385900 + MLT1K LTR MaLR 154 426 -162 520 170 20 46 chr12 72896816 72896969 -71385520 - L1MC5 LINE L1 -215 7746 7598 22 35 0 0 chr12 72897988 72898017 -71384472 + AT_rich Low_complexity Low_complexity 1 29 0 306 296 25 0 chr12 72898316 72898397 -71384092 - L2 LINE L2 -1 3312 3230 1807 247 80 6 chr12 72899529 72900157 -71382332 + L1ME1 LINE L1 391 1064 -5332 402 175 125 0 chr12 72900174 72900254 -71382235 - MLT1B LTR MaLR -300 90 1 285 216 8 48 chr12 72900254 72900379 -71382110 - L1M4 LINE L1 -3843 2303 2184 333 68 0 0 chr12 72900400 72900444 -71382045 + (TG)n Simple_repeat Simple_repeat 2 45 0 825 244 65 13 chr12 72900451 72900759 -71381730 + L1ME1 LINE L1 2088 2411 -3985 1277 209 48 81 chr12 72900760 72901153 -71381336 + MLT1B LTR MaLR 1 380 -10 2534 226 34 71 chr12 72901160 72902277 -71380212 + L1ME1 LINE L1 2365 3440 -2775 5921 95 22 0 chr12 72902362 72903256 -71379233 - L1MA2 LINE L1 -4 6300 5387 5952 236 59 20 chr12 72903256 72904503 -71377986 + L1ME1 LINE L1 3470 4667 -1568 2166 116 17 0 chr12 72904503 72904629 -71377860 + AluSx SINE Alu 1 123 -189 405 0 0 0 chr12 72904629 72904674 -71377815 + (CA)n Simple_repeat Simple_repeat 2 46 0 2166 116 17 0 chr12 72904674 72904849 -71377640 + AluSx SINE Alu 123 307 -5 5952 236 59 20 chr12 72904849 72906259 -71376230 + L1ME1 LINE L1 4667 6231 -4 22 35 0 0 chr12 72906418 72906447 -71376042 + AT_rich Low_complexity Low_complexity 1 29 0 1627 120 32 7 chr12 72906545 72906829 -71375660 - L1MA8 LINE L1 -13 6278 5988 1560 148 4 4 chr12 72906829 72907100 -71375389 - L1M2 LINE L1 -510 5781 5508 210 71 0 0 chr12 72907114 72907142 -71375347 + (CAT)n Simple_repeat Simple_repeat 1 28 0 821 229 109 9 chr12 72907172 72907382 -71375107 - MIR SINE MIR -30 232 2 1110 276 166 31 chr12 72907897 72908862 -71373627 - HAL1 LINE L1 -599 1908 814 354 310 180 11 chr12 72909473 72909734 -71372755 - L3 LINE CR1 -162 1415 1111 2575 33 10 7 chr12 72910839 72911143 -71371346 + AluY SINE Alu 1 305 -6 384 302 8 24 chr12 72911488 72911614 -71370875 + L2 LINE L2 2948 3071 -201 407 297 129 13 chr12 72911662 72911817 -71370672 + MIR SINE MIR 56 228 -34 2386 92 0 0 chr12 72912271 72912564 -71369925 - AluSg SINE Alu -17 293 1 670 219 35 47 chr12 72912948 72913041 -71369448 + MIR SINE MIR 15 107 -155 1962 163 35 22 chr12 72913041 72913410 -71369079 + MLT1A2 LTR MaLR 1 374 0 670 219 35 47 chr12 72913410 72913485 -71369004 + MIR SINE MIR 107 181 -81 324 0 0 0 chr12 72914830 72914866 -71367623 + (CA)n Simple_repeat Simple_repeat 1 36 0 502 312 0 0 chr12 72915273 72915427 -71367062 - MLT1D LTR MaLR 0 505 352 261 171 44 69 chr12 72915433 72915552 -71366937 - MLT1D LTR MaLR -340 165 71 1573 166 36 70 chr12 72915560 72915822 -71366667 - MLT1B LTR MaLR -10 380 111 1851 102 171 16 chr12 72915822 72916137 -71366352 + THE1B LTR MaLR 1 364 0 12104 74 12 2 chr12 72916137 72917699 -71364790 + THE1B-int LTR MaLR 1 1578 -2 2123 110 78 26 chr12 72917701 72918047 -71364442 + THE1B LTR MaLR 1 364 0 1573 166 36 70 chr12 72918047 72918166 -71364323 - MLT1B LTR MaLR -279 111 8 311 240 0 13 chr12 72918173 72918248 -71364241 - MLT1D LTR MaLR -427 78 5 2009 148 0 0 chr12 72919262 72919589 -71362900 + AluSx SINE Alu 1 327 0 388 0 0 0 chr12 72919546 72919638 -71362851 + (TAA)n Simple_repeat Simple_repeat 1 92 0 476 220 28 102 chr12 72919809 72919986 -71362503 - MER117 DNA MER1_type -33 164 1 720 284 58 44 chr12 72920059 72920640 -71361849 - L2 LINE L2 -4 3309 2726 380 296 86 70 chr12 72920904 72921275 -71361214 - L2 LINE L2 0 3272 2896 24 0 0 0 chr12 72921412 72921436 -71361053 + AT_rich Low_complexity Low_complexity 1 24 0 459 285 67 31 chr12 72921709 72921990 -71360499 - L1ME LINE L1 -420 5701 5406 22 35 0 0 chr12 72922403 72922432 -71360057 + AT_rich Low_complexity Low_complexity 1 29 0 231 36 0 0 chr12 72922816 72922844 -71359645 + (T)n Simple_repeat Simple_repeat 1 28 0 210 313 153 45 chr12 72922964 72923140 -71359349 - L2 LINE L2 -194 3078 2884 217 211 0 0 chr12 72923625 72923663 -71358826 + polypurine Low_complexity Low_complexity 4 41 0 195 129 0 0 chr12 72923778 72923809 -71358680 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 24 32 0 0 chr12 72923862 72923893 -71358596 + AT_rich Low_complexity Low_complexity 1 31 0 433 207 0 0 chr12 72924134 72924221 -71358268 - Tigger5 DNA MER2_type 0 2323 2237 459 291 109 30 chr12 72924365 72924630 -71357859 + L2 LINE L2 2616 2901 -413 419 318 40 26 chr12 72924830 72924981 -71357508 + L2 LINE L2 3117 3269 -3 27 49 0 0 chr12 72925386 72925427 -71357062 + AT_rich Low_complexity Low_complexity 1 41 0 284 168 242 21 chr12 72925942 72926037 -71356452 + MIR SINE MIR 85 200 -62 279 278 65 46 chr12 72933621 72933729 -71348760 + L2 LINE L2 3203 3312 -1 308 241 0 0 chr12 72933827 72933881 -71348608 + L2 LINE L2 3165 3218 -54 193 233 0 0 chr12 72934547 72934590 -71347899 - L2 LINE L2 -87 3226 3184 243 342 104 64 chr12 72935462 72936193 -71346296 + L2 LINE L2 2048 2807 -507 666 238 26 7 chr12 72936376 72936527 -71345962 + MIR SINE MIR 61 214 -48 224 318 109 0 chr12 72936658 72936768 -71345721 + L2 LINE L2 3150 3271 -1 2225 102 0 0 chr12 72937385 72937702 -71344787 + AluSx SINE Alu 1 312 0 22 35 0 0 chr12 72938156 72938185 -71344304 + AT_rich Low_complexity Low_complexity 1 29 0 413 346 19 13 chr12 72938639 72938795 -71343694 + MIR3 SINE MIR 41 197 -11 26 50 0 0 chr12 72940519 72940559 -71341930 + GC_rich Low_complexity Low_complexity 1 40 0 413 295 174 58 chr12 72940596 72941026 -71341463 - L1M2 LINE L1 -5842 1007 528 27 62 0 0 chr12 72941183 72941231 -71341258 + GC_rich Low_complexity Low_complexity 1 48 0 375 309 137 75 chr12 72941413 72942079 -71340410 + L1M2 LINE L1 537 1243 -5606 315 0 0 0 chr12 72943262 72943297 -71339192 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 276 266 25 25 chr12 72943485 72943564 -71338925 - MIR3 SINE MIR -126 82 4 186 43 0 0 chr12 72943879 72943902 -71338587 + (T)n Simple_repeat Simple_repeat 1 23 0 2207 116 7 0 chr12 72944794 72945104 -71337385 - AluSq SINE Alu -1 312 1 1280 157 7 5 chr12 72945177 72945483 -71337006 + MLT1A1 LTR MaLR 1 365 0 207 352 60 63 chr12 72945516 72945851 -71336638 - L2 LINE L2 -93 3179 2846 782 171 81 0 chr12 72945916 72946039 -71336450 + AluJo SINE Alu 2 134 -178 2350 94 3 7 chr12 72946175 72946484 -71336005 + AluSx SINE Alu 1 308 -4 1191 237 137 45 chr12 72947705 72948254 -71334235 - L2 LINE L2 0 3313 2719 1800 160 0 44 chr12 72948264 72948582 -71333907 + AluJo SINE Alu 9 312 0 2217 93 11 0 chr12 72948600 72948878 -71333611 + AluSq SINE Alu 18 298 -15 2461 70 0 25 chr12 72948940 72949256 -71333233 + AluY SINE Alu 1 308 -3 1454 261 124 11 chr12 72949424 72949892 -71332597 + LTR33 LTR ERVL 1 521 0 194 353 125 35 chr12 72949968 72950200 -71332289 - L2 LINE L2 -213 3059 2807 788 243 90 14 chr12 72951314 72951536 -71330953 - MIR SINE MIR 0 262 24 3894 111 17 2 chr12 72952915 72953455 -71329034 + L1PA13 LINE L1 5616 6163 0 3244 162 71 8 chr12 72953672 72954228 -71328261 + Tigger3b DNA MER2_type 1 601 -2427 2059 114 20 7 chr12 72954228 72954526 -71327963 + AluSx SINE Alu 1 302 -10 3244 162 71 8 chr12 72954526 72954588 -71327901 + Tigger3b DNA MER2_type 601 658 -573 720 192 0 23 chr12 72954590 72954720 -71327769 - FLAM_A SINE Alu -8 134 8 3721 124 9 7 chr12 72954720 72955284 -71327205 + Tigger3b DNA MER2_type 668 1232 0 616 278 116 0 chr12 72955474 72955672 -71326817 - MIR SINE MIR -29 233 13 270 0 0 0 chr12 72956392 72956422 -71326067 + (T)n Simple_repeat Simple_repeat 1 30 0 627 291 96 5 chr12 72957284 72957504 -71324985 + MIR SINE MIR 23 262 0 763 176 24 41 chr12 72959339 72959509 -71322980 + Charlie8 DNA MER1_type 36 202 -2215 2184 180 61 10 chr12 72960261 72960672 -71321817 + MSTB1 LTR MaLR 1 432 0 1939 265 95 41 chr12 72960673 72961358 -71321131 + L2 LINE L2 2296 3032 -281 578 202 39 23 chr12 72961358 72961506 -71320983 - FRAM SINE Alu 0 40 1 603 220 31 72 chr12 72961597 72961820 -71320669 + L2 LINE L2 3099 3312 -1 511 120 13 0 chr12 72962187 72962262 -71320227 - MADE1 DNA Mariner 0 80 5 448 263 161 11 chr12 72962706 72962892 -71319597 - MIR SINE MIR -37 225 12 241 352 29 0 chr12 72963796 72963901 -71318588 + L2 LINE L2 2680 2787 -527 3387 141 23 25 chr12 72964044 72964563 -71317926 - MLT2B1 LTR ERVL 0 520 3 16510 148 40 6 chr12 72964564 72968149 -71314340 - ERVL-B1 LTR ERVL -6 5758 2014 8780 189 74 2 chr12 72968141 72969794 -71312695 - ERVL-B1 LTR ERVL -3972 1792 22 * 1912 213 22 92 chr12 72969826 72969861 -71312628 - MLT2B1 LTR ERVL 0 515 479 222 37 0 0 chr12 72969861 72969888 -71312601 + (TA)n Simple_repeat Simple_repeat 2 28 0 1912 213 22 92 chr12 72969888 72969943 -71312546 - MLT2B1 LTR ERVL -36 479 422 242 56 28 0 chr12 72969943 72969979 -71312510 + (CA)n Simple_repeat Simple_repeat 2 38 0 1912 213 22 92 chr12 72969979 72970441 -71312048 - MLT2B1 LTR ERVL -93 422 1 2544 87 0 0 chr12 72970451 72970763 -71311726 - AluSq SINE Alu -1 312 1 298 333 61 0 chr12 72970802 72970901 -71311588 + L2 LINE L2 3168 3272 0 2193 113 0 23 chr12 72971009 72971319 -71311170 - AluSq SINE Alu -10 303 1 563 270 34 39 chr12 72971340 72971544 -71310945 - L2 LINE L2 -8 3305 3103 431 237 0 0 chr12 72971583 72971659 -71310830 + MER21B LTR ERV1 12 87 -776 2863 230 96 30 chr12 72971684 72972431 -71310058 + MER21B LTR ERV1 19 815 -48 685 306 77 15 chr12 72972483 72972854 -71309635 - L2 LINE L2 -231 3082 2694 329 254 115 18 chr12 72973811 72973976 -71308513 + L1ME4a LINE L1 5691 5871 -250 34 96 0 0 chr12 72974110 72974214 -71308275 + AT_rich Low_complexity Low_complexity 1 104 0 22 35 0 0 chr12 72974247 72974276 -71308213 + AT_rich Low_complexity Low_complexity 1 29 0 428 238 80 33 chr12 72976700 72976851 -71305638 - MIR SINE MIR -98 164 7 2305 136 21 0 chr12 72977629 72977959 -71304530 - MER1B DNA MER1_type 0 337 1 332 286 143 19 chr12 72978120 72978281 -71304208 + MIR SINE MIR 28 208 -54 1554 126 31 0 chr12 72979586 72979809 -71302680 + MER30 DNA MER1_type 1 230 0 26 0 0 0 chr12 72979965 72979991 -71302498 + AT_rich Low_complexity Low_complexity 1 26 0 366 157 14 14 chr12 72980002 72980072 -71302417 - L1MC5 LINE L1 -71 7890 7821 1652 163 41 10 chr12 72980092 72980387 -71302102 - L1MC2 LINE L1 -1 6343 6040 390 255 49 10 chr12 72980562 72980664 -71301825 - MIR SINE MIR -109 153 48 200 293 286 0 chr12 72981985 72982132 -71300357 - L3 LINE CR1 -133 1444 1256 422 313 67 31 chr12 72982257 72982481 -71300008 - MIR SINE MIR -10 252 21 21 0 0 0 chr12 72982597 72982618 -71299871 + AT_rich Low_complexity Low_complexity 1 21 0 287 191 48 16 chr12 72982703 72982766 -71299723 - MLT1J2 LTR MaLR -1 449 385 1529 171 53 92 chr12 72982841 72983220 -71299269 + MLT1B LTR MaLR 27 390 0 941 220 100 12 chr12 72983235 72983485 -71299004 - MLT1J2 LTR MaLR -159 291 20 449 197 16 57 chr12 72983592 72983714 -71298775 - L2 LINE L2 -2 3311 3195 388 206 124 0 chr12 72983852 72983949 -71298540 + MER46C DNA MER2_type 3 111 -227 870 184 14 69 chr12 72984726 72984943 -71297546 + MER3 DNA MER1_type 1 205 -4 217 269 0 0 chr12 72985430 72985482 -71297007 + L2 LINE L2 3216 3267 -5 1394 121 33 0 chr12 72986092 72986307 -71296182 + L1MA6 LINE L1 6079 6300 0 2202 128 0 0 chr12 72986908 72987214 -71295275 - AluSg SINE Alu -4 306 1 627 274 102 14 chr12 72988212 72988427 -71294062 + MIR SINE MIR 19 252 -10 300 253 133 24 chr12 72988458 72988541 -71293948 - L2 LINE L2 -45 3227 3136 1993 126 3 13 chr12 72988574 72988875 -71293614 + AluSx SINE Alu 1 298 -14 206 227 0 0 chr12 72989323 72989367 -71293122 + CT-rich Low_complexity Low_complexity 2 45 0 1187 140 13 77 chr12 72990011 72990246 -71292243 - AluJo SINE Alu -30 282 63 28 0 0 0 chr12 72990255 72990283 -71292206 + AT_rich Low_complexity Low_complexity 1 28 0 1617 156 50 10 chr12 72990351 72990652 -71291837 - THE1C LTR MaLR -2 373 61 1995 189 31 3 chr12 72990792 72991146 -71291343 + MLT1A1 LTR MaLR 2 365 0 601 80 0 80 chr12 72991500 72991588 -71290901 - AluJ/FRAM SINE Alu -16 296 216 1827 209 3 14 chr12 72992731 72993094 -71289395 - MLT1A2 LTR MaLR -4 370 12 1865 167 0 7 chr12 72993534 72993839 -71288650 + AluJb SINE Alu 2 304 -8 22 0 0 0 chr12 72993875 72993897 -71288592 + AT_rich Low_complexity Low_complexity 1 22 0 184 295 197 25 chr12 72994824 72994946 -71287543 - MIR3 SINE MIR -65 143 1 298 233 68 0 chr12 72995915 72995988 -71286501 + MIR SINE MIR 69 146 -62 480 268 18 0 chr12 72996168 72996280 -71286209 - MER81 DNA DNA 0 114 1 21 0 0 0 chr12 72996745 72996766 -71285723 + AT_rich Low_complexity Low_complexity 1 21 0 661 129 24 65 chr12 72997621 72997745 -71284744 + MER63 DNA MER1_type 1 745 -91 217 104 83 0 chr12 72997989 72998037 -71284452 + CT-rich Low_complexity Low_complexity 3 54 0 731 201 6 0 chr12 72998050 72998214 -71284275 + CT-rich Low_complexity Low_complexity 4 168 0 240 223 64 0 chr12 72998232 72998326 -71284163 + CT-rich Low_complexity Low_complexity 1 100 0 1559 185 27 37 chr12 72998326 72998624 -71283865 - AluJo SINE Alu -14 298 4 340 341 80 22 chr12 72999108 72999246 -71283243 + L2 LINE L2 3119 3264 -8 270 0 0 0 chr12 73000019 73000049 -71282440 + (T)n Simple_repeat Simple_repeat 1 30 0 1870 163 0 3 chr12 73001418 73001713 -71280776 + AluSx SINE Alu 1 294 -18 277 301 0 14 chr12 73001725 73001798 -71280691 + MIR SINE MIR 78 149 -113 954 273 134 32 chr12 73001820 73002348 -71280141 - MLT1L LTR MaLR 0 615 34 380 304 59 0 chr12 73003406 73003508 -71278981 + MER81 DNA DNA 3 110 -4 750 243 82 79 chr12 73003747 73004076 -71278413 - MER46C DNA MER2_type -1 337 8 279 302 23 12 chr12 73007175 73007261 -71275228 + L2 LINE L2 3208 3294 -19 191 36 36 0 chr12 73007547 73007575 -71274914 + (CA)n Simple_repeat Simple_repeat 2 30 0 808 182 44 0 chr12 73007577 73007736 -71274753 - ORSL DNA AcHobo -109 166 1 252 279 23 23 chr12 73008001 73008087 -71274402 - MIR3 SINE MIR -8 200 115 201 278 122 52 chr12 73008649 73008764 -71273725 - L2 LINE L2 -6 3266 3144 497 330 124 16 chr12 73009603 73009918 -71272571 - L2 LINE L2 0 3272 2924 196 308 8 83 chr12 73009922 73010055 -71272434 + L2 LINE L2 2990 3112 -160 225 167 0 0 chr12 73010240 73010282 -71272207 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 428 370 31 6 chr12 73011225 73011387 -71271102 - L2 LINE L2 -5 3267 3102 977 186 96 10 chr12 73011741 73011940 -71270549 - MER20 DNA MER1_type -1 218 3 866 225 225 57 chr12 73012100 73012523 -71269966 + MLT1J LTR MaLR 1 494 -17 204 40 0 0 chr12 73012659 73012684 -71269805 + (TTCTC)n Simple_repeat Simple_repeat 4 28 0 262 354 128 4 chr12 73012815 73013041 -71269448 + L1MC/D LINE L1 5451 5704 -2104 2268 268 102 4 chr12 73013081 73013843 -71268646 - L2 LINE L2 -1064 2250 1414 476 201 85 85 chr12 73013854 73014018 -71268471 + MLT1H LTR MaLR 382 545 -4 759 260 129 32 chr12 73014038 73014442 -71268047 - L1MC4a LINE L1 -1963 5845 5403 478 74 32 13 chr12 73014815 73014913 -71267576 - MLT2A1 LTR ERVL 0 444 371 459 0 0 0 chr12 73015071 73015122 -71267367 + (TA)n Simple_repeat Simple_repeat 1 51 0 2947 55 25 0 chr12 73015122 73015487 -71267002 - MLT2A1 LTR ERVL -70 374 1 24 0 0 0 chr12 73017913 73017937 -71264552 + AT_rich Low_complexity Low_complexity 1 24 0 2126 113 0 33 chr12 73017961 73018263 -71264226 - AluSg1 SINE Alu -17 292 1 750 177 0 15 chr12 73018490 73018620 -71263869 + FLAM_C SINE Alu 14 141 -2 33207 99 12 59 chr12 73018694 73025159 -71257330 + L1PA7 LINE L1 12 6154 0 256 226 118 43 chr12 73025201 73025387 -71257102 + L1M4 LINE L1 4354 4553 -1593 325 364 6 6 chr12 73025615 73025791 -71256698 + L1M4 LINE L1 4971 5146 -1000 1563 190 17 3 chr12 73026059 73026348 -71256141 - AluJb SINE Alu -8 304 12 1131 152 5 15 chr12 73026356 73026553 -71255936 - AluJb SINE Alu 0 312 118 2409 71 0 0 chr12 73026582 73026877 -71255612 - AluY SINE Alu -16 295 1 936 164 0 7 chr12 73026877 73027023 -71255466 - AluJo SINE Alu -166 146 2 517 270 101 6 chr12 73027058 73027217 -71255272 - MIR SINE MIR -49 213 40 484 234 65 149 chr12 73027356 73027758 -71254731 - L2 LINE L2 0 3313 2946 505 220 45 69 chr12 73028549 73028798 -71253691 - MER58B DNA MER1_type -15 326 3 368 279 77 77 chr12 73030072 73030280 -71252209 + MLT2E LTR ERVL 1 208 -420 247 269 75 21 chr12 73030466 73030559 -71251930 + LTR33A LTR ERVL 417 514 -9 537 304 112 36 chr12 73030770 73031073 -71251416 + L1MEd LINE L1 323 648 -5471 411 266 182 26 chr12 73031648 73031840 -71250649 - MIR SINE MIR -22 240 19 565 202 44 0 chr12 73031929 73032043 -71250446 - MIR SINE MIR -17 245 127 228 387 0 13 chr12 73032261 73032336 -71250153 + L2 LINE L2 3177 3250 -22 415 309 77 56 chr12 73032426 73032659 -71249830 + MIR SINE MIR 14 251 -11 286 272 136 0 chr12 73032729 73032810 -71249679 - L2 LINE L2 -40 3232 3141 2022 188 75 9 chr12 73033539 73034006 -71248483 + L1MB8 LINE L1 5667 6164 -14 656 70 0 10 chr12 73034323 73034423 -71248066 + (TAGA)n Simple_repeat Simple_repeat 1 99 0 1058 240 78 83 chr12 73034424 73034870 -71247619 + L2 LINE L2 2205 2648 -666 2184 116 0 0 chr12 73036122 73036414 -71246075 - AluY SINE Alu -19 292 1 201 362 14 0 chr12 73036451 73036520 -71245969 - MIR SINE MIR -189 73 4 731 301 131 37 chr12 73037028 73037722 -71244767 - L2 LINE L2 0 3313 2538 25 75 0 0 chr12 73038108 73038161 -71244328 + AT_rich Low_complexity Low_complexity 1 53 0 1273 297 10 0 chr12 73038519 73038832 -71243657 + MLT1I LTR MaLR 86 401 -8 388 317 129 43 chr12 73040658 73040854 -71241635 - MIR SINE MIR -53 209 1 36 23 0 0 chr12 73041168 73041211 -71241278 + AT_rich Low_complexity Low_complexity 1 43 0 201 304 25 38 chr12 73042611 73042690 -71239799 + MIR SINE MIR 18 95 -113 1025 151 119 32 chr12 73043696 73043851 -71238638 + MIR SINE MIR 4 185 -77 2713 96 3 3 chr12 73043851 73044215 -71238274 - THE1B LTR MaLR 0 364 1 1025 151 119 32 chr12 73044215 73044278 -71238211 + MIR SINE MIR 185 241 -21 190 333 51 17 chr12 73044732 73044849 -71237640 + L2 LINE L2 3190 3310 -3 608 294 75 26 chr12 73044894 73045020 -71237469 + MIR SINE MIR 13 131 -131 1724 154 66 33 chr12 73045020 73045383 -71237106 - THE1C LTR MaLR 0 375 1 608 294 75 26 chr12 73045383 73045484 -71237005 + MIR SINE MIR 131 251 -11 1022 250 179 42 chr12 73046158 73046200 -71236289 - LTR50 LTR ERVL -2 793 758 2358 67 0 0 chr12 73046200 73046509 -71235980 - AluY SINE Alu 0 309 1 1022 250 179 42 chr12 73046509 73047162 -71235327 - LTR50 LTR ERVL -37 758 1 566 333 30 8 chr12 73048428 73048662 -71233827 - MIR SINE MIR 0 262 24 614 263 44 7 chr12 73049677 73050018 -71232471 + MLT1I LTR MaLR 1 407 -2 582 272 129 15 chr12 73050036 73050238 -71232251 - MIR SINE MIR -36 226 2 2224 282 91 30 chr12 73051308 73051896 -71230593 - L2 LINE L2 -23 3290 2739 1720 159 42 12 chr12 73051896 73052230 -71230259 + MER2 DNA MER2_type 1 344 0 2224 282 91 30 chr12 73052230 73052850 -71229639 - L2 LINE L2 -574 2739 2014 603 236 0 8 chr12 73053578 73053701 -71228788 + MIR SINE MIR 121 242 -20 269 343 206 16 chr12 73053725 73054031 -71228458 - L2 LINE L2 -15 3298 2935 378 322 7 21 chr12 73055554 73055697 -71226792 + MIR SINE MIR 11 151 -111 2085 77 8 0 chr12 73056260 73056520 -71225969 - AluSc SINE Alu -7 302 41 190 130 0 43 chr12 73057649 73057695 -71224794 + (CATA)n Simple_repeat Simple_repeat 3 46 0 477 252 25 17 chr12 73057706 73057825 -71224664 + MER5B DNA MER1_type 54 173 -5 713 216 31 84 chr12 73057854 73058065 -71224424 + MIR SINE MIR 19 219 -43 2311 114 0 0 chr12 73058065 73058364 -71224125 + AluSx SINE Alu 5 303 -9 713 216 31 84 chr12 73058364 73058379 -71224110 + MIR SINE MIR 219 233 -29 302 0 26 0 chr12 73059808 73059846 -71222643 + (TG)n Simple_repeat Simple_repeat 1 39 0 200 214 18 0 chr12 73059847 73059903 -71222586 + GA-rich Low_complexity Low_complexity 2 58 0 197 234 21 21 chr12 73060512 73060559 -71221930 + L2 LINE L2 3203 3249 -23 308 326 45 23 chr12 73060566 73060698 -71221791 + MIR SINE MIR 20 154 -108 795 233 102 40 chr12 73060699 73061099 -71221390 - LTR37A LTR ERV1 0 426 2 335 23 23 0 chr12 73061861 73061905 -71220584 + (TG)n Simple_repeat Simple_repeat 1 45 0 237 250 12 62 chr12 73063116 73063196 -71219293 - MLT1K LTR MaLR -510 78 3 271 312 114 36 chr12 73064176 73064378 -71218111 + L2 LINE L2 2794 3009 -263 219 309 72 31 chr12 73064389 73064486 -71218003 + L2 LINE L2 3169 3269 -3 2332 103 0 0 chr12 73065165 73065466 -71217023 - AluSc SINE Alu -8 301 1 1145 227 64 14 chr12 73065554 73065849 -71216640 - MLT1H LTR MaLR -195 354 45 1055 260 65 59 chr12 73065900 73066607 -71215882 + L1ME3A LINE L1 4737 5444 -726 2232 113 0 3 chr12 73066607 73066916 -71215573 + AluSx SINE Alu 1 308 -4 1055 260 65 59 chr12 73066916 73067337 -71215152 + L1ME3A LINE L1 5444 5861 -309 1471 188 0 74 chr12 73067843 73068167 -71214322 + AluJo SINE Alu 3 302 -10 180 200 0 0 chr12 73068262 73068302 -71214187 + CT-rich Low_complexity Low_complexity 2 41 0 235 277 84 12 chr12 73068498 73068581 -71213908 + MIR SINE MIR 56 144 -118 2894 164 23 4 chr12 73069533 73070065 -71212424 + L1MB1 LINE L1 5611 6152 -16 25 0 0 0 chr12 73070069 73070094 -71212395 + AT_rich Low_complexity Low_complexity 1 25 0 1423 173 30 103 chr12 73070237 73070636 -71211853 + MLT1A2 LTR MaLR 5 374 0 1454 174 84 31 chr12 73071472 73071794 -71210695 - MER2 DNA MER2_type -6 339 1 1765 186 48 51 chr12 73071808 73072282 -71210207 - MLT1D LTR MaLR -7 498 26 2310 114 0 0 chr12 73073018 73073325 -71209164 - AluSq SINE Alu -6 307 1 1612 186 80 20 chr12 73073685 73074034 -71208455 - MLT1A2 LTR MaLR -4 370 1 295 218 0 0 chr12 73074104 73074159 -71208330 + L2 LINE L2 3255 3309 -4 21 57 0 0 chr12 73074334 73074369 -71208120 + AT_rich Low_complexity Low_complexity 1 35 0 260 338 28 14 chr12 73074545 73074687 -71207802 + LTR67 LTR ERVL 101 244 -313 265 297 0 34 chr12 73074722 73074840 -71207649 + LTR67 LTR ERVL 412 525 -32 266 360 103 48 chr12 73075125 73075436 -71207053 + L3 LINE CR1 1164 1491 -86 207 0 0 0 chr12 73075545 73075568 -71206921 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 203 56 56 28 chr12 73075871 73075907 -71206582 + (AATAG)n Simple_repeat Simple_repeat 4 40 0 24 0 0 0 chr12 73076654 73076678 -71205811 + AT_rich Low_complexity Low_complexity 1 24 0 886 267 50 4 chr12 73076705 73076945 -71205544 - MIR SINE MIR -10 252 2 350 290 30 20 chr12 73077169 73077269 -71205220 - MIR SINE MIR -145 117 17 664 256 68 47 chr12 73077377 73077802 -71204687 + HAL1b LINE L1 68 501 -847 360 381 53 3 chr12 73077998 73078321 -71204168 - LTR16C LTR ERVL -2 489 151 1213 199 143 30 chr12 73078390 73078726 -71203763 + MLT1A2 LTR MaLR 1 374 0 1000 262 77 54 chr12 73078918 73079286 -71203203 - L1MC4a LINE L1 -1867 5941 5550 2015 117 38 0 chr12 73079286 73079577 -71202912 - AluSg SINE Alu -8 302 1 1000 262 77 54 chr12 73079577 73079841 -71202648 - L1MC4a LINE L1 -2258 5550 5294 542 229 157 20 chr12 73081312 73081465 -71201024 + MER5A DNA MER1_type 9 182 -7 618 350 79 34 chr12 73082325 73082919 -71199570 + L1 LINE L1 3325 3945 -2201 1615 181 21 10 chr12 73082922 73083210 -71199279 + AluJb SINE Alu 1 291 -21 22 0 0 0 chr12 73083613 73083635 -71198854 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr12 73083696 73083717 -71198772 + (A)n Simple_repeat Simple_repeat 1 21 0 216 0 0 0 chr12 73084109 73084133 -71198356 + (A)n Simple_repeat Simple_repeat 1 24 0 206 248 209 48 chr12 73084608 73084713 -71197776 - L2 LINE L2 0 3272 3151 354 339 47 6 chr12 73086200 73086371 -71196118 - MIR SINE MIR -6 256 79 484 375 56 12 chr12 73086439 73086762 -71195727 - L2 LINE L2 -56 3257 2921 692 328 111 46 chr12 73086784 73087354 -71195135 + L1M4 LINE L1 3714 4320 -1826 1047 124 40 27 chr12 73087369 73087600 -71194889 - L1P LINE L1 -746 5408 5183 2747 103 47 43 chr12 73087600 73088114 -71194375 + L1MA8 LINE L1 5771 6286 -5 21 0 0 0 chr12 73088120 73088141 -71194348 + AT_rich Low_complexity Low_complexity 1 21 0 11869 20 1 2 chr12 73088150 73090317 -71192172 - L1PA2 LINE L1 -5 6150 3986 625 324 8 40 chr12 73090881 73091128 -71191361 - MIR SINE MIR -1 261 23 273 283 97 0 chr12 73091188 73091301 -71191188 - MIR SINE MIR -48 214 91 1938 149 0 0 chr12 73091334 73091642 -71190847 - AluSx SINE Alu 0 308 1 495 240 47 16 chr12 73091654 73091783 -71190706 + MER94 DNA DNA 1 133 -1 256 322 42 49 chr12 73092211 73092354 -71190135 + MER5B DNA MER1_type 12 153 -25 180 77 0 0 chr12 73092674 73092700 -71189789 + (CATA)n Simple_repeat Simple_repeat 3 28 0 2227 102 7 0 chr12 73093222 73093507 -71188982 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr12 73093736 73093757 -71188732 + AT_rich Low_complexity Low_complexity 1 21 0 435 248 0 56 chr12 73094484 73094557 -71187932 + MIR3 SINE MIR 82 147 -61 2350 82 10 0 chr12 73094557 73094861 -71187628 + AluY SINE Alu 1 307 -4 435 248 0 56 chr12 73094861 73094912 -71187577 + MIR3 SINE MIR 147 199 -9 1279 247 35 43 chr12 73096386 73096754 -71185735 - MLT1A1 LTR MaLR 0 365 1 411 329 40 18 chr12 73097266 73097494 -71184995 + MIR SINE MIR 18 250 -12 2393 81 0 3 chr12 73097881 73098178 -71184311 + AluSc SINE Alu 1 296 -13 251 336 55 0 chr12 73098560 73098688 -71183801 + L2 LINE L2 3179 3313 0 204 234 21 0 chr12 73099896 73099943 -71182546 + CT-rich Low_complexity Low_complexity 2 49 0 191 321 66 97 chr12 73100606 73100802 -71181687 + L2 LINE L2 2990 3179 -93 211 353 90 0 chr12 73101848 73101981 -71180508 - MER5A DNA MER1_type -1 188 44 * 236 232 131 10 chr12 73101889 73101988 -71180501 + MER5A DNA MER1_type 54 164 -25 21 0 0 0 chr12 73103239 73103260 -71179229 + AT_rich Low_complexity Low_complexity 1 21 0 481 291 107 68 chr12 73104532 73104886 -71177603 + MLT1J LTR MaLR 101 468 -43 3482 175 74 14 chr12 73106608 73106679 -71175810 - L1MB7 LINE L1 -14 6170 6105 2451 70 0 10 chr12 73106679 73106979 -71175510 + AluY SINE Alu 1 297 -14 426 39 0 0 chr12 73106980 73107032 -71175457 + (TA)n Simple_repeat Simple_repeat 2 53 0 3482 175 74 14 chr12 73107032 73107665 -71174824 - L1MB7 LINE L1 -78 6106 5422 842 118 8 0 chr12 73107689 73107816 -71174673 - L1PB3 LINE L1 -6 6148 6021 237 65 0 0 chr12 73107876 73107907 -71174582 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2866 113 24 13 chr12 73108042 73108510 -71173979 - L1P3 LINE L1 -4748 1713 1241 234 235 10 41 chr12 73108742 73108840 -71173649 + C-rich Low_complexity Low_complexity 4 98 0 * 249 288 6 44 chr12 73108798 73108958 -71173531 + (CCCCG)n Simple_repeat Simple_repeat 4 157 0 68 89 0 0 chr12 73108975 73109143 -71173346 + GC_rich Low_complexity Low_complexity 1 168 0 188 119 0 48 chr12 73110015 73110057 -71172432 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 183 204 23 0 chr12 73110073 73110117 -71172372 + L2 LINE L2 3224 3268 -4 251 173 49 12 chr12 73110139 73110220 -71172269 + GA-rich Low_complexity Low_complexity 4 87 0 2159 114 44 36 chr12 73110320 73110681 -71171808 + THE1B LTR MaLR 1 364 0 202 328 60 91 chr12 73111122 73111506 -71170983 + L2 LINE L2 2897 3268 -4 242 250 36 36 chr12 73112071 73112155 -71170334 + L2 LINE L2 3185 3268 -4 1108 195 69 106 chr12 73112554 73112933 -71169556 + MLT1A1 LTR MaLR 1 365 0 724 303 159 15 chr12 73113108 73113517 -71168972 + LTR33 LTR ERVL 27 494 -27 560 335 161 25 chr12 73113532 73114052 -71168437 - L2 LINE L2 -527 2787 2197 44 0 0 0 chr12 73114729 73114773 -71167716 + AT_rich Low_complexity Low_complexity 1 44 0 506 250 47 62 chr12 73114813 73115005 -71167484 + MER112 DNA MER1_type 65 253 -7 296 321 29 43 chr12 73115643 73115783 -71166706 + MIR SINE MIR 19 156 -106 431 250 43 0 chr12 73115863 73115979 -71166510 + MIR SINE MIR 138 258 -4 243 103 0 0 chr12 73116025 73116064 -71166425 + (CA)n Simple_repeat Simple_repeat 2 40 0 750 183 0 8 chr12 73116181 73116312 -71166177 - FLAM_A SINE Alu 0 133 4 1235 200 51 67 chr12 73116412 73116787 -71165702 - MLT1B LTR MaLR 0 390 22 22712 33 8 1 chr12 73117446 73120979 -71161510 + L1PA3 LINE L1 2598 6155 0 1197 107 6 6 chr12 73121006 73121183 -71161306 + L1P LINE L1 1 177 -5969 256 243 27 40 chr12 73121309 73121383 -71161106 + GA-rich Low_complexity Low_complexity 2 74 0 3564 53 0 7 chr12 73122736 73123189 -71159300 + LTR7 LTR ERV1 1 450 0 3758 118 59 66 chr12 73123214 73123910 -71158579 - LTR8 LTR ERV1 0 691 1 2145 242 45 125 chr12 73124729 73125462 -71157027 - L2 LINE L2 -858 2456 1737 744 128 0 0 chr12 73125462 73125579 -71156910 - AluSg/x SINE Alu -3 309 193 2145 242 45 125 chr12 73125579 73125975 -71156514 - L2 LINE L2 -1577 1737 1311 2385 58 7 3 chr12 73125982 73126276 -71156213 + AluY SINE Alu 3 297 -14 1228 262 49 22 chr12 73126283 73126939 -71155550 - L2 LINE L2 -97 3216 2543 1882 138 20 17 chr12 73126940 73127076 -71155413 + AluSx SINE Alu 1 135 -177 2302 76 0 58 chr12 73127076 73127406 -71155083 + AluY SINE Alu 1 311 0 1882 138 20 17 chr12 73127406 73127566 -71154923 + AluSx SINE Alu 135 298 -14 616 245 101 16 chr12 73127728 73127916 -71154573 - MLT1F LTR MaLR 0 542 339 226 308 23 68 chr12 73127977 73128110 -71154379 - MLT1F LTR MaLR -301 289 163 576 255 52 0 chr12 73129561 73129714 -71152775 - MIR SINE MIR -88 174 14 2116 256 57 67 chr12 73130485 73131461 -71151028 - L1M2 LINE L1 -5071 1778 800 255 358 8 8 chr12 73131625 73131745 -71150744 + G-rich Low_complexity Low_complexity 2 121 0 291 264 20 23 chr12 73131749 73132010 -71150479 + GA-rich Low_complexity Low_complexity 1 260 0 192 274 69 59 chr12 73132682 73132784 -71149705 + MIR SINE MIR 154 256 -6 492 234 89 124 chr12 73132912 73133169 -71149320 + MIR SINE MIR 14 261 -1 1595 161 20 31 chr12 73133307 73133699 -71148790 - L1PA3 LINE L1 0 6155 5768 1415 181 0 0 chr12 73133815 73134041 -71148448 - AluJo SINE Alu -85 227 2 1209 243 22 0 chr12 73134311 73134587 -71147902 - MER58B DNA MER1_type -2 339 58 65 112 0 0 chr12 73134652 73134903 -71147586 + GC_rich Low_complexity Low_complexity 1 251 0 232 251 14 41 chr12 73135076 73135225 -71147264 + G-rich Low_complexity Low_complexity 1 144 0 383 231 33 71 chr12 73135807 73135989 -71146500 + L1M4 LINE L1 2183 2357 -3789 231 125 0 25 chr12 73136006 73136046 -71146443 + L1M3 LINE L1 5448 5486 -685 1789 130 8 0 chr12 73136046 73136292 -71146197 + AluSq SINE Alu 1 248 -65 189 74 0 0 chr12 73236371 73236398 -71046091 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr12 73236404 73236434 -71046055 + AT_rich Low_complexity Low_complexity 1 30 0 272 211 173 29 chr12 73236437 73236541 -71045948 - L1ME LINE L1 -241 5880 5762 299 279 62 78 chr12 73236607 73236695 -71045794 - MIR SINE MIR -14 248 163 2186 100 14 3 chr12 73236695 73236984 -71045505 + AluSp SINE Alu 1 292 -21 299 279 62 78 chr12 73236984 73237074 -71045415 - MIR SINE MIR -99 163 73 585 277 38 11 chr12 73237336 73237520 -71044969 - MIR SINE MIR -42 220 32 233 176 118 0 chr12 73238093 73238161 -71044328 + MIR SINE MIR 124 199 -63 1589 164 51 48 chr12 73238702 73239013 -71043476 + AluJo SINE Alu 1 312 0 263 272 9 44 chr12 73240356 73240470 -71042019 - MIR SINE MIR -35 227 118 1225 123 0 0 chr12 73240619 73240781 -71041708 - AluSg/x SINE Alu -17 295 134 2281 123 0 0 chr12 73240781 73241083 -71041406 - AluSx SINE Alu -10 302 1 416 231 29 10 chr12 73241354 73241454 -71041035 + MER103 DNA DNA 27 128 -38 1342 289 11 3 chr12 73241454 73241814 -71040675 + HsTC2 DNA Tc2 3 365 -1533 1226 211 0 9 chr12 73241823 73242046 -71040443 - MLT1A1 LTR MaLR 0 365 145 920 185 88 32 chr12 73242057 73242306 -71040183 - MER41B LTR ERV1 -86 549 287 2541 130 5 15 chr12 73242518 73242919 -71039570 - MER41B LTR ERV1 -238 397 1 670 142 19 9 chr12 73242919 73243025 -71039464 - MER41B-int LTR ERV1 0 5946 5840 893 164 19 6 chr12 73243025 73243184 -71039305 - MLT1A1 LTR MaLR -204 161 1 810 194 56 22 chr12 73243184 73243363 -71039126 + HsTC2 DNA Tc2 371 555 -1343 385 123 0 31 chr12 73243357 73243422 -71039067 + HsTC2 DNA Tc2 1792 1854 -44 * 797 189 33 115 chr12 73243531 73243637 -71038852 - MIR SINE MIR 0 262 186 2397 80 0 26 chr12 73243637 73243950 -71038539 + AluSp SINE Alu 1 305 -8 797 189 33 115 chr12 73243950 73244086 -71038403 - MIR SINE MIR -76 186 40 28 29 0 0 chr12 73245168 73245203 -71037286 + AT_rich Low_complexity Low_complexity 1 35 0 1870 145 17 14 chr12 73246998 73247295 -71035194 + AluSx SINE Alu 1 298 -14 698 161 77 42 chr12 73247487 73247630 -71034859 + MIR SINE MIR 88 235 -27 1474 119 167 8 chr12 73248396 73248667 -71033822 + AluSg SINE Alu 1 300 0 1948 143 3 7 chr12 73248904 73249198 -71033291 - AluJb SINE Alu -19 293 1 264 30 0 0 chr12 73249623 73249656 -71032833 + (GA)n Simple_repeat Simple_repeat 2 34 0 184 397 53 20 chr12 73250941 73251188 -71031301 + L2 LINE L2 2807 3061 -211 393 310 44 0 chr12 73251318 73251431 -71031058 + L2 LINE L2 3139 3256 -16 284 290 70 10 chr12 73251451 73251551 -71030938 + L2 LINE L2 3200 3305 -8 2374 230 118 14 chr12 73251854 73252715 -71029774 - L1ME3A LINE L1 -8 6162 5219 180 208 62 21 chr12 73252929 73252977 -71029512 - MIR SINE MIR -150 112 63 276 282 206 23 chr12 73253187 73253318 -71029171 - L2 LINE L2 0 3313 3159 451 297 0 0 chr12 73254100 73254245 -71028244 + L1ME LINE L1 5481 5625 -545 373 300 106 36 chr12 73255304 73255927 -71026562 + L1MC/D LINE L1 4549 5289 -1211 2106 132 30 0 chr12 73255927 73256230 -71026259 + AluSx SINE Alu 1 312 0 373 300 106 36 chr12 73256230 73256652 -71025837 + L1MC/D LINE L1 5289 5680 -820 359 244 58 0 chr12 73257234 73257320 -71025169 - L2 LINE L2 -10 3303 3213 395 290 57 16 chr12 73257783 73257907 -71024582 + L2 LINE L2 3142 3270 -2 582 241 0 22 chr12 73257981 73258118 -71024371 - MLT1A1 LTR MaLR 0 365 232 1000 179 12 101 chr12 73258120 73258541 -71023948 - MER4B LTR ERV1 0 704 325 1088 184 0 0 chr12 73258921 73259089 -71023400 - FAM SINE Alu -6 169 2 28 29 0 0 chr12 73259097 73259132 -71023357 + AT_rich Low_complexity Low_complexity 1 35 0 2272 102 0 16 chr12 73259189 73259503 -71022986 - AluSx SINE Alu -3 309 1 2022 110 10 3 chr12 73259560 73259850 -71022639 + AluSx SINE Alu 1 292 -20 2032 140 3 13 chr12 73260034 73260212 -71022277 - AluSx SINE Alu -1 311 136 2053 126 3 17 chr12 73260212 73260513 -71021976 - AluSc SINE Alu -12 297 1 2032 140 3 13 chr12 73260513 73260648 -71021841 - AluSx SINE Alu -176 136 1 1704 166 24 7 chr12 73260963 73261252 -71021237 + AluSx SINE Alu 1 294 -18 276 227 0 0 chr12 73261262 73261328 -71021161 - MLT1F LTR MaLR -7 535 470 29 60 0 0 chr12 73261335 73261385 -71021104 + AT_rich Low_complexity Low_complexity 1 50 0 1327 215 0 19 chr12 73261390 73261650 -71020839 - MLT1F LTR MaLR -92 450 196 1216 107 0 0 chr12 73261651 73261819 -71020670 + AluY SINE Alu 137 304 -7 936 251 19 5 chr12 73261819 73262026 -71020463 - MLT1F LTR MaLR -332 210 1 327 260 6 55 chr12 73262317 73262498 -71019991 + A-rich Low_complexity Low_complexity 3 174 0 23 54 0 0 chr12 73263350 73263387 -71019102 + AT_rich Low_complexity Low_complexity 1 37 0 1767 137 100 0 chr12 73263423 73263694 -71018795 - AluSx SINE Alu -14 298 1 834 288 96 30 chr12 73263702 73264431 -71018058 - L1MEd LINE L1 -4863 1256 480 259 217 0 0 chr12 73264922 73264982 -71017507 + L1 LINE L1 3887 3946 -2200 213 121 0 0 chr12 73264991 73265024 -71017465 + (CA)n Simple_repeat Simple_repeat 1 33 0 214 282 70 42 chr12 73265142 73265213 -71017276 - MIR3 SINE MIR -46 162 90 4893 129 25 3 chr12 73265292 73266400 -71016089 - L1PA16 LINE L1 -9 6157 5080 301 140 0 0 chr12 73266440 73266490 -71015999 + L1 LINE L1 3887 3936 -2210 2143 106 17 0 chr12 73266603 73266895 -71015594 + AluSq SINE Alu 1 297 -16 188 86 29 0 chr12 73266906 73266941 -71015548 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 1270 169 0 10 chr12 73266954 73267155 -71015334 - AluJo SINE Alu -30 282 84 296 252 8 16 chr12 73267177 73267300 -71015189 + L1ME LINE L1 4076 4197 -1949 180 111 0 0 chr12 73267300 73267327 -71015162 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 884 286 126 20 chr12 73267370 73268376 -71014113 + L1ME LINE L1 4207 5341 -805 229 277 0 0 chr12 73268392 73268457 -71014032 - MER3 DNA MER1_type -132 77 13 302 296 17 0 chr12 73268471 73268586 -71013903 + L1ME LINE L1 5731 5847 -323 802 232 0 53 chr12 73268591 73268607 -71013882 + AluJo SINE Alu 123 138 -174 2159 130 3 0 chr12 73268607 73268907 -71013582 + AluSx SINE Alu 1 301 -11 802 232 0 53 chr12 73268907 73269080 -71013409 + AluJo SINE Alu 138 302 -10 33 0 0 0 chr12 73269093 73269126 -71013363 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chr12 73269471 73269506 -71012983 + AT_rich Low_complexity Low_complexity 1 35 0 3403 120 24 4 chr12 73269683 73270184 -71012305 - MER9 LTR ERVK 0 511 1 349 299 31 8 chr12 73270191 73270318 -71012171 + L1MC/D LINE L1 4445 4574 -1572 1739 177 48 6 chr12 73270326 73270682 -71011807 - MSTA LTR MaLR 0 428 58 567 317 73 10 chr12 73270751 73271051 -71011438 + L1MC/D LINE L1 4916 5234 -912 686 271 35 50 chr12 73271090 73271174 -71011315 - MIR SINE MIR -3 259 175 1004 93 0 0 chr12 73271174 73271325 -71011164 + L1MA4A LINE L1 6148 6298 -5 686 271 35 50 chr12 73271325 73271498 -71010991 - MIR SINE MIR -87 175 6 2230 106 10 0 chr12 73271531 73271824 -71010665 + AluSg SINE Alu 1 296 -14 379 292 43 69 chr12 73271834 73272180 -71010309 + L1MC/D LINE L1 5312 5648 -473 386 303 0 33 chr12 73273396 73273548 -71008941 - MIR SINE MIR -46 216 70 189 300 0 20 chr12 73274255 73274305 -71008184 + L2 LINE L2 3122 3170 -102 26 50 0 0 chr12 73274447 73274487 -71008002 + AT_rich Low_complexity Low_complexity 1 40 0 672 269 115 44 chr12 73274549 73274954 -71007535 + L1ME4a LINE L1 5212 5587 -534 995 167 12 6 chr12 73274954 73275122 -71007367 - FAM SINE Alu -6 169 1 672 269 115 44 chr12 73275122 73275483 -71007006 + L1ME4a LINE L1 5587 6038 -83 2286 107 0 10 chr12 73275537 73275847 -71006642 + AluSx SINE Alu 3 309 -3 220 365 73 39 chr12 73276435 73276695 -71005794 + L2 LINE L2 2538 2806 -508 440 248 93 0 chr12 73276764 73276893 -71005596 + FLAM_C SINE Alu 1 141 -2 1507 177 0 45 chr12 73277029 73277295 -71005194 + AluJb SINE Alu 1 254 -58 272 116 0 23 chr12 73277385 73277428 -71005061 - MER63B DNA MER1_type 0 434 393 410 0 0 20 chr12 73277428 73277479 -71005010 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 235 352 16 48 chr12 73277516 73277641 -71004848 - L2 LINE L2 -18 3254 3134 290 323 21 10 chr12 73277919 73278015 -71004474 + L2 LINE L2 2903 2999 -273 840 256 63 10 chr12 73278040 73278247 -71004242 - MIR SINE MIR -30 232 15 319 341 89 0 chr12 73278434 73278557 -71003932 + L2 LINE L2 3138 3271 -1 1817 188 60 19 chr12 73278783 73279137 -71003352 + MER63B DNA MER1_type 6 381 -681 4095 126 47 4 chr12 73279137 73279857 -71002632 - L1MA4 LINE L1 -6 6294 5544 1817 188 60 19 chr12 73279857 73279916 -71002573 + MER63B DNA MER1_type 381 436 0 225 0 0 0 chr12 73280954 73280979 -71001510 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3001 67 2 17 chr12 73280979 73281383 -71001106 - L1PA6 LINE L1 -18 6136 5739 1473 66 0 5 chr12 73281562 73281758 -71000731 - L1PA4 LINE L1 -1 6154 5960 5665 26 0 0 chr12 73281758 73282460 -71000029 + L1P LINE L1 4424 5125 -1021 1967 112 59 59 chr12 73282473 73282847 -70999642 - THE1C LTR MaLR -1 374 1 850 225 6 33 chr12 73283402 73283502 -70998987 + MER45A DNA AcHobo 2 96 -1485 2211 73 45 3 chr12 73283502 73283791 -70998698 - AluSg SINE Alu -9 301 1 850 225 6 33 chr12 73283791 73283872 -70998617 + MER45A DNA AcHobo 96 178 0 627 212 217 10 chr12 73284046 73284249 -70998240 - MIR SINE MIR 0 262 18 188 281 105 0 chr12 73284728 73284785 -70997704 + MIR SINE MIR 6 68 -194 385 248 124 31 chr12 73284942 73285103 -70997386 + MIR SINE MIR 87 262 0 260 320 98 77 chr12 73285491 73285932 -70996557 + L2 LINE L2 1569 2018 -1296 401 247 70 70 chr12 73286176 73286291 -70996198 - MIR3 SINE MIR -1 207 90 852 263 148 47 chr12 73286291 73286846 -70995643 - MLT1L LTR MaLR -3 612 2 401 247 70 70 chr12 73286846 73286888 -70995601 - MIR3 SINE MIR -117 91 50 2221 136 16 25 chr12 73287035 73287402 -70995087 + THE1B LTR MaLR 1 364 0 2063 128 7 7 chr12 73287804 73288101 -70994388 - AluSx SINE Alu -15 297 1 211 205 0 0 chr12 73288276 73288315 -70994174 + (CAA)n Simple_repeat Simple_repeat 2 40 0 2289 119 19 32 chr12 73288676 73289045 -70993444 + THE1B LTR MaLR 1 364 0 2416 185 51 54 chr12 73289259 73289998 -70992491 + L1ME1 LINE L1 4140 4876 -1270 276 222 0 0 chr12 73289998 73290052 -70992437 - AluJ/monomer SINE Alu -245 54 1 3269 209 34 35 chr12 73290052 73291086 -70991403 + L1ME1 LINE L1 5078 6112 -54 2061 130 3 19 chr12 73291086 73291393 -70991096 - AluSx SINE Alu -10 302 1 3269 209 34 35 chr12 73291393 73291443 -70991046 + L1ME1 LINE L1 6112 6161 -5 199 387 35 42 chr12 73291747 73291889 -70990600 + L2 LINE L2 3099 3239 -33 1800 140 0 53 chr12 73292172 73292494 -70989995 - MER1B DNA MER1_type 0 339 35 2380 91 3 7 chr12 73293170 73293478 -70989011 - AluSp SINE Alu -6 307 1 376 245 87 53 chr12 73293559 73293759 -70988730 + MIR SINE MIR 4 252 -10 209 268 42 28 chr12 73294644 73294715 -70987774 - MIR SINE MIR -65 197 126 208 241 0 19 chr12 73295248 73295302 -70987187 - MIR SINE MIR -53 209 157 346 178 56 56 chr12 73295371 73295478 -70987011 + MIR SINE MIR 96 202 -60 342 259 24 0 chr12 73295501 73295586 -70986903 - MIR SINE MIR -105 157 71 221 311 67 22 chr12 73295947 73296037 -70986452 + MIR SINE MIR 119 212 -50 201 74 0 0 chr12 73296199 73296226 -70986263 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 244 366 38 70 chr12 73297558 73297744 -70984745 + L2 LINE L2 2999 3178 -94 325 219 41 0 chr12 73298240 73298313 -70984176 - MIR SINE MIR -147 115 40 816 275 20 36 chr12 73298472 73298719 -70983770 + MIR SINE MIR 2 244 -18 378 331 78 26 chr12 73298858 73299012 -70983477 + MIR SINE MIR 21 182 -80 1509 157 9 133 chr12 73300135 73300480 -70982009 - AluJo SINE Alu 0 302 1 205 333 139 9 chr12 73300661 73300769 -70981720 + L2 LINE L2 3150 3271 -1 225 0 0 0 chr12 73301143 73301168 -70981321 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 405 0 0 0 chr12 73301167 73301212 -70981277 + (TG)n Simple_repeat Simple_repeat 2 46 0 647 268 106 4 chr12 73301265 73301500 -70980989 - MIR SINE MIR -1 261 3 23 0 0 0 chr12 73301753 73301776 -70980713 + AT_rich Low_complexity Low_complexity 1 23 0 1801 151 7 21 chr12 73301873 73302164 -70980325 - AluSx SINE Alu -25 287 1 242 301 27 27 chr12 73302521 73302594 -70979895 - L2 LINE L2 -50 3222 3150 21 0 0 0 chr12 73302998 73303019 -70979470 + AT_rich Low_complexity Low_complexity 1 21 0 4344 194 28 13 chr12 73303019 73303890 -70978599 - L1MB5 LINE L1 -8 6166 5283 337 323 56 16 chr12 73304189 73304315 -70978174 - MIR SINE MIR -52 210 75 2357 92 3 3 chr12 73304315 73304619 -70977870 + AluSx SINE Alu 1 304 -8 337 323 56 16 chr12 73304619 73304679 -70977810 - MIR SINE MIR -187 75 19 237 281 221 43 chr12 73304716 73305019 -70977470 + L2 LINE L2 2611 2967 -347 280 282 66 29 chr12 73305203 73305444 -70977045 + L1M4 LINE L1 4298 4547 -1599 452 345 36 22 chr12 73305450 73305673 -70976816 + MIR SINE MIR 36 261 -1 290 237 13 0 chr12 73305998 73306074 -70976415 - L1ME3A LINE L1 -106 6064 5988 2381 79 0 3 chr12 73306820 73307124 -70975365 + AluSc SINE Alu 1 303 -6 367 306 36 36 chr12 73307330 73307523 -70974966 - MIR SINE MIR -42 220 28 2133 224 55 44 chr12 73307992 73308725 -70973764 - L1ME3A LINE L1 -224 5946 5190 1958 142 10 0 chr12 73308725 73309021 -70973468 - AluSx SINE Alu -13 299 1 2133 224 55 44 chr12 73309021 73309085 -70973404 - L1ME3A LINE L1 -980 5190 5128 974 166 12 12 chr12 73309100 73309263 -70973226 - FRAM SINE Alu -17 159 1 1245 236 71 14 chr12 73309274 73309639 -70972850 - L1ME3A LINE L1 -1295 4851 4466 2361 83 3 37 chr12 73309829 73310153 -70972336 - AluSq SINE Alu 0 313 1 366 308 28 153 chr12 73310405 73310543 -70971946 + L2 LINE L2 2827 2981 -291 4577 22 0 0 chr12 73310543 73311033 -70971456 - SVA Other Other 0 1386 897 366 308 28 153 chr12 73311033 73311403 -70971086 + L2 LINE L2 2981 3271 -1 1963 141 20 10 chr12 73314327 73314625 -70967864 - AluSx SINE Alu -11 301 1 281 136 0 0 chr12 73314780 73314824 -70967665 - MLT1I LTR MaLR -3 406 363 389 271 47 0 chr12 73314902 73315009 -70967480 + MLT1I LTR MaLR 195 306 -103 594 181 76 0 chr12 73315357 73315462 -70967027 + MER81 DNA DNA 1 113 -1 351 303 55 0 chr12 73315609 73315718 -70966771 + L2 LINE L2 3199 3313 0 283 187 19 93 chr12 73316495 73316602 -70965887 + MIR SINE MIR 118 216 -46 222 319 85 0 chr12 73316796 73316890 -70965599 - MIR SINE MIR -79 183 82 2079 232 133 72 chr12 73317415 73318579 -70963910 - L2 LINE L2 0 3313 2078 896 127 0 0 chr12 73318734 73318852 -70963637 + FLAM_C SINE Alu 1 118 -15 195 42 0 0 chr12 73318857 73318881 -70963608 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1777 156 3 52 chr12 73319225 73319551 -70962938 + AluSx SINE Alu 1 310 -2 1587 95 45 9 chr12 73319698 73319920 -70962569 + MER30 DNA MER1_type 1 230 0 1050 130 13 0 chr12 73321753 73321907 -70960582 - L1PB4 LINE L1 0 6156 6001 2139 126 7 3 chr12 73322228 73322537 -70959952 + AluSx SINE Alu 1 310 -2 246 369 75 28 chr12 73323039 73323253 -70959236 + L2 LINE L2 3038 3261 -11 275 323 50 10 chr12 73324499 73324598 -70957891 - L2 LINE L2 -8 3264 3162 1973 144 24 0 chr12 73324797 73325095 -70957394 - AluSx SINE Alu -7 305 1 2099 120 0 3 chr12 73325319 73325642 -70956847 + AluSq SINE Alu 1 322 0 283 361 135 18 chr12 73326225 73326566 -70955923 + L2 LINE L2 2588 2968 -346 266 316 150 8 chr12 73327929 73328062 -70954427 + L2 LINE L2 3162 3313 0 598 277 33 38 chr12 73328115 73328328 -70954161 + MIR SINE MIR 50 261 -1 829 299 130 35 chr12 73328408 73328900 -70953589 - HAL1 LINE L1 -1967 540 2 201 378 10 0 chr12 73329091 73329189 -70953300 - L2 LINE L2 -208 3064 2966 363 172 0 0 chr12 73329463 73329527 -70952962 + MLT1K LTR MaLR 523 586 -2 2108 136 17 0 chr12 73329560 73329862 -70952627 - AluSx SINE Alu -5 307 1 358 210 151 42 chr12 73330333 73330452 -70952037 - MIR SINE MIR -28 234 103 1785 119 0 0 chr12 73330817 73331053 -70951436 + AluSx SINE Alu 3 238 -74 2614 202 78 42 chr12 73331101 73331727 -70950762 + MER21B LTR ERV1 52 796 -135 189 0 0 0 chr12 73331727 73331748 -70950741 + (AATTG)n Simple_repeat Simple_repeat 1 21 0 2614 202 78 42 chr12 73331748 73331811 -70950678 + MER21B LTR ERV1 796 855 -76 4353 218 16 34 chr12 73331856 73331972 -70950517 + MER4B-int LTR ERV1 3085 3201 -3557 2407 93 0 0 chr12 73331972 73332273 -70950216 + AluSq SINE Alu 1 301 -12 4353 218 16 34 chr12 73332273 73333137 -70949352 + MER4B-int LTR ERV1 3201 4048 -2710 265 250 92 26 chr12 73333185 73333261 -70949228 - L2 LINE L2 -44 3269 3189 27 0 0 0 chr12 73333494 73333521 -70948968 + AT_rich Low_complexity Low_complexity 1 27 0 251 309 103 0 chr12 73334096 73334193 -70948296 - MIR SINE MIR -64 144 38 592 218 157 20 chr12 73334216 73334413 -70948076 + MIR SINE MIR 12 235 -27 1612 143 0 96 chr12 73334530 73334877 -70947612 + AluJo SINE Alu 1 316 0 1215 179 32 28 chr12 73334897 73335115 -70947374 + MER20 DNA MER1_type 1 219 0 835 183 8 0 chr12 73335163 73335294 -70947195 - FLAM_C SINE Alu -10 133 2 23 0 0 0 chr12 73335541 73335564 -70946925 + AT_rich Low_complexity Low_complexity 1 23 0 2406 100 3 0 chr12 73335716 73336025 -70946464 + AluSx SINE Alu 1 310 -2 189 182 0 0 chr12 73336030 73336085 -70946404 + (TAAG)n Simple_repeat Simple_repeat 1 55 0 6979 123 19 13 chr12 73336501 73337360 -70945129 - L1MA2 LINE L1 0 6304 5432 2297 113 0 0 chr12 73337360 73337660 -70944829 - AluSx SINE Alu -12 300 1 6979 123 19 13 chr12 73337660 73338208 -70944281 - L1MA2 LINE L1 -872 5432 4889 284 233 22 56 chr12 73338532 73338622 -70943867 - L2 LINE L2 -6 3307 3221 274 238 119 30 chr12 73341573 73341674 -70940815 - MIR SINE MIR -114 148 39 190 318 79 0 chr12 73342140 73342203 -70940286 + MIR SINE MIR 21 88 -174 1423 124 14 28 chr12 73342367 73342584 -70939905 + L1PB4 LINE L1 5939 6152 -4 183 80 0 0 chr12 73342592 73342617 -70939872 + (A)n Simple_repeat Simple_repeat 1 25 0 409 248 207 21 chr12 73342635 73342780 -70939709 - MER5A DNA MER1_type 0 189 18 659 132 9 9 chr12 73344842 73344948 -70937541 + MLT1A1 LTR MaLR 1 106 -259 425 36 36 0 chr12 73344958 73345013 -70937476 - MLT2A2 LTR ERVL 0 453 397 483 165 32 6 chr12 73345021 73345179 -70937310 + (TA)n Simple_repeat Simple_repeat 2 163 0 3050 108 12 0 chr12 73345179 73345587 -70936902 - MLT2A2 LTR ERVL -40 413 1 958 245 79 0 chr12 73345587 73345802 -70936687 + MLT1A1 LTR MaLR 134 365 0 569 277 0 14 chr12 73346197 73346345 -70936144 + MLT2F LTR ERVL 1 146 -517 691 155 72 109 chr12 73346351 73346510 -70935979 + MLT1E3 LTR MaLR 53 205 -419 1591 80 0 15 chr12 73346510 73346710 -70935779 + MER107 DNA MER1_type 1 197 0 691 155 72 109 chr12 73346710 73346743 -70935746 + MLT1E3 LTR MaLR 205 238 -386 628 295 23 17 chr12 73346794 73346967 -70935522 + MLT2F LTR ERVL 196 369 -294 304 202 226 143 chr12 73347006 73347174 -70935315 + MLT2F LTR ERVL 482 663 0 279 259 62 0 chr12 73347264 73347345 -70935144 - L2 LINE L2 -48 3265 3180 827 169 128 23 chr12 73348298 73348470 -70934019 - AluJo SINE Alu -3 309 120 210 309 151 8 chr12 73348609 73348735 -70933754 + MIR SINE MIR 117 260 -2 4855 131 14 1 chr12 73349047 73349778 -70932711 - L1MA5A LINE L1 0 6297 5558 1218 154 0 0 chr12 73349806 73349981 -70932508 + AluSg/x SINE Alu 126 300 -12 8427 166 25 22 chr12 73349981 73351208 -70931281 - L1MA5A LINE L1 -743 5403 4181 2893 88 6 0 chr12 73351208 73351561 -70930928 + THE1A LTR MaLR 1 355 0 12316 96 11 9 chr12 73351561 73353137 -70929352 + THE1A-int LTR MaLR 1 1580 0 2859 80 8 0 chr12 73353138 73353489 -70929000 + THE1A LTR MaLR 2 355 0 8427 166 25 22 chr12 73353489 73354143 -70928346 - L1MA5A LINE L1 -1964 4182 3649 2284 117 0 0 chr12 73354400 73354699 -70927790 + AluSx SINE Alu 1 299 -13 728 154 7 15 chr12 73354709 73354845 -70927644 + L1MB4 LINE L1 6046 6180 0 213 218 0 0 chr12 73354851 73354906 -70927583 + A-rich Low_complexity Low_complexity 1 55 0 206 271 86 29 chr12 73355053 73355123 -70927366 - MIR3 SINE MIR -54 154 81 565 319 90 39 chr12 73355390 73355747 -70926742 + L2 LINE L2 2861 3235 -37 362 276 109 63 chr12 73355969 73356190 -70926299 + L3b LINE CR1 1323 1553 -30 2021 148 7 0 chr12 73357170 73357468 -70925021 + AluSx SINE Alu 1 300 -12 3165 137 53 9 chr12 73357710 73358235 -70924254 - L1MB3 LINE L1 0 6183 5636 259 297 54 45 chr12 73358986 73359097 -70923392 - MIR SINE MIR -3 259 148 779 253 79 63 chr12 73359113 73359623 -70922866 + MLT1L LTR MaLR 26 607 -8 199 348 11 0 chr12 73359828 73359917 -70922572 + L2 LINE L2 2655 2744 -570 2115 206 130 14 chr12 73360027 73360513 -70921976 - MLT1F LTR MaLR 0 542 1 618 328 44 13 chr12 73360528 73360757 -70921732 - Charlie8 DNA MER1_type -2181 236 1 597 266 8 0 chr12 73360945 73361069 -70921420 + MER94 DNA DNA 7 131 -3 207 350 0 0 chr12 73361359 73361419 -70921070 + L2 LINE L2 3245 3304 -9 284 299 75 30 chr12 73362135 73362269 -70920220 + MIR SINE MIR 36 175 -87 199 264 139 47 chr12 73362937 73363066 -70919423 + MIR SINE MIR 122 262 0 1974 162 0 0 chr12 73363839 73364135 -70918354 - AluSx SINE Alu -14 298 3 1963 130 0 11 chr12 73364557 73364895 -70917594 + AluSx SINE Alu 1 335 0 404 268 42 35 chr12 73364954 73365096 -70917393 + L2 LINE L2 3135 3277 -36 570 225 27 0 chr12 73365979 73366090 -70916399 - MER81 DNA DNA 0 114 1 1132 229 154 9 chr12 73366817 73367181 -70915308 - MER74B LTR ERVL -119 439 34 2056 124 0 0 chr12 73367186 73367491 -70914998 + AluSx SINE Alu 1 305 0 512 312 59 5 chr12 73367562 73367764 -70914725 + MIR SINE MIR 2 214 -48 217 316 0 18 chr12 73367958 73368015 -70914474 + L3b LINE CR1 1520 1575 -8 2263 100 0 0 chr12 73368113 73368402 -70914087 - AluSx SINE Alu -23 289 1 350 173 0 0 chr12 73369183 73369264 -70913225 - AluJ/FRAM SINE Alu 0 311 231 1593 156 0 37 chr12 73369264 73369534 -70912955 - AluJo SINE Alu -51 261 2 876 234 23 62 chr12 73370053 73370309 -70912180 + MIR SINE MIR 15 260 -2 1058 261 152 40 chr12 73370755 73371081 -70911408 + L2 LINE L2 2550 2838 -475 2114 54 12 0 chr12 73371081 73371339 -70911150 - AluY SINE Alu -12 299 39 1058 261 152 40 chr12 73371339 73371365 -70911124 + L2 LINE L2 2838 2860 -453 1892 160 0 0 chr12 73371365 73371676 -70910813 + AluSx SINE Alu 1 311 0 1058 261 152 40 chr12 73371676 73372007 -70910482 + L2 LINE L2 2860 3313 0 266 301 103 37 chr12 73372066 73372202 -70910287 - MIR SINE MIR -70 192 48 336 228 55 55 chr12 73372426 73372482 -70910007 + MER94 DNA DNA 2 57 -77 2371 106 0 0 chr12 73372482 73372784 -70909705 - AluSx SINE Alu -10 302 1 336 228 55 55 chr12 73372784 73372854 -70909635 + MER94 DNA DNA 56 128 -6 2175 127 0 3 chr12 73373331 73373631 -70908858 - AluSx SINE Alu -13 299 1 30 27 0 0 chr12 73373686 73373723 -70908766 + AT_rich Low_complexity Low_complexity 1 37 0 182 37 37 0 chr12 73373746 73373773 -70908716 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2256 79 0 0 chr12 73373773 73374083 -70908406 - L1PA8 LINE L1 -22 6150 5841 276 317 17 8 chr12 73375231 73375351 -70907138 + CT-rich Low_complexity Low_complexity 3 123 0 370 218 138 0 chr12 73375516 73375603 -70906886 + MIR SINE MIR 162 260 -2 1698 175 0 30 chr12 73375740 73376037 -70906452 - AluJo SINE Alu -24 288 1 207 296 0 0 chr12 73376065 73376119 -70906370 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 1055 92 0 0 chr12 73376349 73376480 -70906009 + AluSg SINE Alu 1 131 -179 366 256 38 15 chr12 73377380 73377513 -70904976 - L1ME4a LINE L1 -1 6120 5985 670 193 161 107 chr12 73377528 73377808 -70904681 + MER102b DNA MER1_type 37 331 -10 1175 57 23 11 chr12 73378052 73378229 -70904260 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1300 118 86 33 chr12 73378237 73378482 -70904007 - AluJb SINE Alu -54 258 1 528 293 58 21 chr12 73378552 73378794 -70903695 + MER112 DNA MER1_type 1 251 -9 422 264 92 35 chr12 73379148 73379322 -70903167 + L2 LINE L2 2953 3136 -177 505 290 33 11 chr12 73379339 73379522 -70902967 - MIR3 SINE MIR -8 200 14 186 71 0 0 chr12 73379530 73379558 -70902931 + (T)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr12 73379668 73379696 -70902793 + (CA)n Simple_repeat Simple_repeat 2 29 0 344 220 73 18 chr12 73380463 73380572 -70901917 + LTR67 LTR ERVL 433 547 -10 509 317 40 10 chr12 73380647 73380779 -70901710 - MIR SINE MIR -6 256 114 2229 147 19 38 chr12 73380779 73381067 -70901422 - MLT1A1 LTR MaLR 0 365 84 2303 95 0 0 chr12 73381067 73381361 -70901128 - AluY SINE Alu -17 294 1 2229 147 19 38 chr12 73381361 73381440 -70901049 - MLT1A1 LTR MaLR -281 84 5 509 317 40 10 chr12 73381440 73381509 -70900980 - MIR SINE MIR -148 114 49 295 270 0 0 chr12 73381747 73381810 -70900679 - MIR3 SINE MIR -35 173 111 2209 89 0 11 chr12 73382403 73382726 -70899763 + AluSg SINE Alu 1 320 0 2634 52 0 0 chr12 73382729 73383035 -70899454 + AluY SINE Alu 1 306 -5 22 35 0 0 chr12 73383569 73383598 -70898891 + AT_rich Low_complexity Low_complexity 1 29 0 827 264 109 34 chr12 73383671 73383718 -70898771 + L1MC4 LINE L1 6554 6596 -1287 207 0 0 0 chr12 73383718 73383741 -70898748 + (TG)n Simple_repeat Simple_repeat 1 23 0 827 264 109 34 chr12 73383741 73383828 -70898661 + L1MC4 LINE L1 6596 6675 -1208 1676 166 43 7 chr12 73383828 73384129 -70898360 - AluJb SINE Alu 0 312 1 827 264 109 34 chr12 73384129 73384335 -70898154 + L1MC4 LINE L1 6675 7002 -881 276 149 0 0 chr12 73384362 73384409 -70898080 + (GGA)n Simple_repeat Simple_repeat 3 49 0 2447 72 0 7 chr12 73384609 73384916 -70897573 - AluSc SINE Alu -4 305 1 863 276 83 82 chr12 73384965 73385319 -70897170 + L1MC4 LINE L1 7135 7487 -555 1316 286 78 14 chr12 73385319 73385805 -70896684 + LTR33 LTR ERVL 2 518 -3 863 276 83 82 chr12 73385805 73386356 -70896133 + L1MC4 LINE L1 7487 8041 -1 181 294 29 0 chr12 73386457 73386525 -70895964 + L2 LINE L2 3152 3221 -92 23 0 0 0 chr12 73386570 73386593 -70895896 + AT_rich Low_complexity Low_complexity 1 23 0 1240 116 0 83 chr12 73386593 73386743 -70895746 - AluJo SINE Alu -30 282 154 2197 100 0 0 chr12 73386743 73387023 -70895466 - AluSx SINE Alu -15 297 18 1240 116 0 83 chr12 73387023 73387088 -70895401 - AluJo SINE Alu -158 154 85 225 0 0 0 chr12 73387088 73387114 -70895375 - FLAM_C SINE Alu 0 250 225 922 133 8 0 chr12 73387119 73387247 -70895242 - FLAM_C SINE Alu -4 129 1 2416 86 0 0 chr12 73387703 73388004 -70894485 + AluSc SINE Alu 1 301 -8 771 218 0 0 chr12 73388012 73388145 -70894344 + FLAM_A SINE Alu 1 133 0 318 248 235 87 chr12 73388283 73388594 -70893895 + MLT1L LTR MaLR 1 357 -258 548 198 74 62 chr12 73388623 73388785 -70893704 + MER63A DNA MER1_type 44 207 -3 593 211 26 76 chr12 73388815 73388975 -70893514 + MLT1L LTR MaLR 321 454 -57 1461 269 133 43 chr12 73390375 73391206 -70891283 + L1MC4a LINE L1 5164 5333 -813 296 256 153 9 chr12 73391776 73391897 -70890592 + MIR SINE MIR 24 156 -63 514 264 79 109 chr12 73391900 73392358 -70890131 + MLT1J1 LTR MaLR 1 444 -2 321 319 83 65 chr12 73392359 73392574 -70889915 - MLT1K LTR MaLR -6 582 372 2818 147 51 2 chr12 73392574 73393024 -70889465 - MER101 LTR ERV1 0 474 3 321 319 83 65 chr12 73393024 73393301 -70889188 - MLT1K LTR MaLR -216 372 81 210 253 11 35 chr12 73393359 73393446 -70889043 + MIR SINE MIR 172 256 -6 2054 113 3 0 chr12 73393749 73394055 -70888434 - AluSx SINE Alu 0 307 1 353 281 43 36 chr12 73394234 73394373 -70888116 + MIR SINE MIR 49 188 -74 505 306 51 19 chr12 73394576 73394792 -70887697 - MIR SINE MIR -2 260 38 305 253 22 44 chr12 73394927 73395018 -70887471 - L2 LINE L2 0 3272 3184 270 257 168 10 chr12 73395754 73395855 -70886634 - MIR SINE MIR -14 248 132 594 245 96 44 chr12 73395878 73396016 -70886473 - L2 LINE L2 -1 3312 3183 312 27 0 0 chr12 73396016 73396053 -70886436 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 594 245 96 44 chr12 73396053 73396163 -70886326 - L2 LINE L2 -130 3183 3051 1605 223 112 47 chr12 73396163 73396591 -70885898 - MLT1F1 LTR MaLR 0 567 99 3729 22 0 10 chr12 73396591 73397008 -70885481 + L1PA4 LINE L1 5743 6155 0 1605 223 112 47 chr12 73397008 73397114 -70885375 - MLT1F1 LTR MaLR -468 99 1 2459 80 0 0 chr12 73397131 73397430 -70885059 + AluSg1 SINE Alu 1 299 -10 237 265 0 0 chr12 73397434 73397483 -70885006 - L2 LINE L2 -271 3042 2994 3658 255 30 17 chr12 73397573 73398568 -70883921 - L2 LINE L2 -454 2860 1853 2608 27 7 3 chr12 73398598 73398899 -70883590 - AluY SINE Alu -9 302 1 356 306 87 46 chr12 73398931 73399104 -70883385 + MER5A DNA MER1_type 7 186 -3 840 123 7 29 chr12 73399251 73399389 -70883100 - AluSg/x SINE Alu -12 300 166 343 205 90 0 chr12 73399389 73399467 -70883022 - AluSg/x SINE Alu -98 202 118 1486 147 136 4 chr12 73400402 73400667 -70881822 + AluJb SINE Alu 1 300 -12 2093 143 0 3 chr12 73402116 73402424 -70880065 - AluJb SINE Alu -5 307 1 424 310 76 0 chr12 73402485 73402630 -70879859 + MIR3 SINE MIR 38 193 -15 578 315 84 42 chr12 73402728 73402966 -70879523 - MIR SINE MIR -8 254 7 536 280 93 28 chr12 73403037 73403157 -70879332 + MIR SINE MIR 33 170 -92 1973 196 19 11 chr12 73403157 73403519 -70878970 + MLT1A1 LTR MaLR 1 365 0 536 280 93 28 chr12 73403519 73403580 -70878909 + MIR SINE MIR 170 226 -36 748 250 79 14 chr12 73403775 73403991 -70878498 + MIR SINE MIR 3 232 -30 21 0 0 0 chr12 73403991 73404012 -70878477 + AT_rich Low_complexity Low_complexity 1 21 0 1553 166 53 33 chr12 73404569 73404829 -70877660 - L1MB8 LINE L1 -37 6141 5871 2488 51 3 0 chr12 73404829 73405122 -70877367 - AluY SINE Alu -17 294 1 1553 166 53 33 chr12 73405122 73405198 -70877291 - L1MB8 LINE L1 -307 5871 5798 1945 193 38 38 chr12 73406206 73406306 -70876183 - Charlie1 DNA MER1_type -16 2745 2646 2384 109 0 0 chr12 73406306 73406610 -70875879 - AluSg SINE Alu -6 304 1 1945 193 38 38 chr12 73406610 73407007 -70875482 - Charlie1 DNA MER1_type -114 2647 2248 1258 213 100 3 chr12 73406994 73407285 -70875204 - Charlie1 DNA MER1_type -834 1927 1609 * 36 23 0 0 chr12 73407549 73407592 -70874897 + AT_rich Low_complexity Low_complexity 1 43 0 1234 295 128 21 chr12 73407592 73408064 -70874425 - L2 LINE L2 0 3313 2893 1279 192 36 139 chr12 73408064 73408161 -70874328 - MLT1A2 LTR MaLR 0 374 269 1418 205 18 3 chr12 73408161 73408444 -70874045 - AluJo SINE Alu -24 288 2 1279 192 36 139 chr12 73408444 73408763 -70873726 - MLT1A2 LTR MaLR -105 269 1 1234 295 128 21 chr12 73408763 73409172 -70873317 - L2 LINE L2 -420 2893 2322 413 303 66 76 chr12 73409198 73409670 -70872819 - MLT1J LTR MaLR -18 493 27 224 361 24 0 chr12 73409699 73409782 -70872707 - L2 LINE L2 -966 2348 2264 281 260 48 10 chr12 73409822 73409926 -70872563 - L2 LINE L2 -1042 2272 2165 502 246 0 25 chr12 73410909 73411027 -70871462 + MER103 DNA DNA 20 134 -32 2412 90 3 0 chr12 73411295 73411596 -70870893 - AluSx SINE Alu -10 302 1 197 289 206 21 chr12 73411603 73411700 -70870789 + L2 LINE L2 2976 3090 -182 671 305 74 0 chr12 73411816 73412019 -70870470 - MIR SINE MIR -14 248 31 186 273 91 0 chr12 73412040 73412084 -70870405 + L2 LINE L2 3215 3262 -10 483 33 0 0 chr12 73412094 73412155 -70870334 + (TG)n Simple_repeat Simple_repeat 1 61 0 426 283 45 89 chr12 73414242 73414578 -70867911 + MLT1J LTR MaLR 114 434 -77 1195 245 133 49 chr12 73414592 73415126 -70867363 + MLT1G LTR MaLR 11 589 -1 365 91 0 18 chr12 73415130 73415185 -70867304 + MLT1L LTR MaLR 552 605 -10 242 252 261 9 chr12 73417309 73417420 -70865069 - MER5A DNA MER1_type 0 189 51 205 358 65 16 chr12 73417837 73417960 -70864529 + L2 LINE L2 332 460 -2854 1520 189 66 48 chr12 73417984 73418318 -70864171 - MER58B DNA MER1_type -1 340 1 460 279 146 6 chr12 73418326 73418484 -70864005 - MER5A DNA MER1_type 0 189 10 415 314 151 5 chr12 73418609 73418794 -70863695 + MIR SINE MIR 17 228 -34 22 0 0 0 chr12 73418812 73418834 -70863655 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr12 73418940 73418962 -70863527 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 469 187 66 0 chr12 73421319 73421410 -70861079 + L2 LINE L2 3217 3313 0 319 211 8 113 chr12 73421697 73421788 -70860701 - L1ME4a LINE L1 0 6121 6047 2587 41 0 31 chr12 73421788 73422108 -70860381 + AluY SINE Alu 2 311 0 319 211 8 113 chr12 73422108 73422149 -70860340 - L1ME4a LINE L1 -74 6047 6003 252 237 0 17 chr12 73422697 73422756 -70859733 + L2 LINE L2 3195 3252 -20 35 41 0 0 chr12 73422784 73422833 -70859656 + AT_rich Low_complexity Low_complexity 1 49 0 608 277 96 52 chr12 73422860 73422895 -70859594 - L1ME4a LINE L1 -105 6016 5984 2207 92 7 3 chr12 73422895 73423189 -70859300 - AluSx SINE Alu -17 295 1 608 277 96 52 chr12 73423189 73423652 -70858837 - L1ME4a LINE L1 -137 5984 5496 197 284 40 14 chr12 73423799 73423873 -70858616 + MIR SINE MIR 59 134 -128 291 140 0 0 chr12 73423974 73424024 -70858465 + (CA)n Simple_repeat Simple_repeat 2 51 0 228 213 0 0 chr12 73424141 73424202 -70858287 + CT-rich Low_complexity Low_complexity 1 61 0 398 245 71 57 chr12 73424202 73424414 -70858075 - L2 LINE L2 -1 3312 3098 554 197 44 71 chr12 73424442 73424625 -70857864 + L2 LINE L2 3067 3244 -69 208 292 149 3 chr12 73424741 73424925 -70857564 - L2 LINE L2 -313 2959 2735 2417 74 3 0 chr12 73426342 73426641 -70855848 + AluSp SINE Alu 5 304 -9 1217 52 0 39 chr12 73427769 73427924 -70854565 + L1PA10 LINE L1 6019 6167 -1 705 215 105 6 chr12 73428072 73428244 -70854245 + MER117 DNA MER1_type 5 193 -4 319 268 49 16 chr12 73428415 73428538 -70853951 - L1ME4a LINE L1 -5 6116 5990 1337 270 85 54 chr12 73428558 73429276 -70853213 - L2 LINE L2 -595 2719 1980 588 146 114 37 chr12 73429481 73429631 -70852858 - L1ME LINE L1 -438 5683 5526 201 147 0 0 chr12 73429665 73429699 -70852790 + (TA)n Simple_repeat Simple_repeat 1 34 0 289 210 24 105 chr12 73429702 73429826 -70852663 + L1MC4 LINE L1 6608 6721 -1321 1207 276 141 18 chr12 73431277 73432081 -70850408 - L2 LINE L2 -4 3309 2404 345 282 190 18 chr12 73432944 73433132 -70849357 + MIR SINE MIR 3 222 -40 196 393 33 16 chr12 73433240 73433362 -70849127 + L2 LINE L2 3143 3266 -6 229 328 0 0 chr12 73434578 73434642 -70847847 + (CTA)n Simple_repeat Simple_repeat 2 65 0 598 289 6 6 chr12 73434708 73434874 -70847615 - MIR SINE MIR -49 213 48 582 248 156 70 chr12 73434891 73434989 -70847500 + MARNA DNA Mariner 224 312 -274 1171 202 113 57 chr12 73434989 73435271 -70847218 - AluJo SINE Alu -4 298 1 582 248 156 70 chr12 73435271 73435499 -70846990 + MARNA DNA Mariner 312 578 -8 273 289 163 7 chr12 73438000 73438135 -70844354 - L2 LINE L2 0 3272 3117 2339 101 0 3 chr12 73438306 73438612 -70843877 - AluSx SINE Alu -7 305 1 266 83 0 0 chr12 73440959 73440995 -70841494 - U2 snRNA snRNA -152 36 1 31 44 0 0 chr12 73443882 73443927 -70838562 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr12 73446382 73446403 -70836086 + AT_rich Low_complexity Low_complexity 1 21 0 2340 58 27 14 chr12 73446809 73447104 -70835385 - AluY SINE Alu -12 299 1 6527 246 103 17 chr12 73447802 73450137 -70832352 - L2 LINE L2 -35 3278 730 296 296 34 0 chr12 73450137 73450225 -70832264 - L2 LINE L2 -3006 308 218 209 232 179 0 chr12 73450242 73450298 -70832191 + L2 LINE L2 3245 3310 -3 1907 151 7 0 chr12 73450693 73450977 -70831512 + AluSx SINE Alu 1 286 -26 185 438 0 12 chr12 73451406 73451486 -70831003 - L2 LINE L2 -60 3212 3134 583 314 185 19 chr12 73451594 73452184 -70830305 - L2 LINE L2 -211 3061 2370 1047 263 117 44 chr12 73452194 73452538 -70829951 - L2 LINE L2 -1 3312 2926 2338 106 0 0 chr12 73452538 73452839 -70829650 + AluSx SINE Alu 1 301 -11 1047 263 117 44 chr12 73452839 73452947 -70829542 - L2 LINE L2 -387 2926 2827 1596 163 7 46 chr12 73453244 73453550 -70828939 - AluJo SINE Alu -18 294 1 6126 175 43 14 chr12 73453554 73455762 -70826727 - L1PA16 LINE L1 -16 6150 3862 1180 181 0 17 chr12 73455762 73456000 -70826489 + L1 LINE L1 3586 3819 -2327 788 114 15 53 chr12 73456639 73456770 -70825719 - FLAM_C SINE Alu -5 128 3 729 215 12 52 chr12 73456774 73456946 -70825543 - AluSc SINE Alu -12 297 133 463 274 120 49 chr12 73456990 73457740 -70824749 - L1ME4a LINE L1 -19 6102 5289 180 0 0 0 chr12 73457999 73458019 -70824470 + (T)n Simple_repeat Simple_repeat 1 20 0 458 135 27 0 chr12 73458536 73458610 -70823879 - MER20 DNA MER1_type -112 107 32 1000 230 55 7 chr12 73458612 73458921 -70823568 - HAL1 LINE L1 -916 1591 1268 1323 175 19 5 chr12 73458922 73459133 -70823356 + AluSx SINE Alu 1 214 -98 265 146 223 0 chr12 73459144 73459247 -70823242 - HAL1 LINE L1 -1228 1279 1154 6039 152 55 24 chr12 73459260 73459299 -70823190 - L1PBb LINE L1 -3013 3190 3154 2030 130 46 3 chr12 73459299 73459645 -70822844 - L1PB2 LINE L1 -2 6149 5789 6039 152 55 24 chr12 73459645 73462247 -70820242 - L1PBb LINE L1 -3049 3154 467 1909 154 16 0 chr12 73462253 73462571 -70819918 - L1PBb LINE L1 -5862 342 20 1219 263 30 12 chr12 73462565 73462991 -70819498 - L1PBa LINE L1 -5504 1359 926 * 298 202 96 11 chr12 73463029 73463123 -70819366 - HAL1 LINE L1 -1429 1078 977 746 327 65 7 chr12 73463138 73463572 -70818917 - HAL1 LINE L1 -1961 546 88 22 0 0 0 chr12 73463745 73463767 -70818722 + AT_rich Low_complexity Low_complexity 1 22 0 241 300 75 0 chr12 73464087 73464207 -70818282 - MIR SINE MIR -71 191 63 2403 87 3 0 chr12 73464374 73464683 -70817806 - AluSg SINE Alu 0 310 1 1949 152 7 0 chr12 73465153 73465450 -70817039 - AluSx SINE Alu -13 299 1 319 355 45 0 chr12 73465780 73465890 -70816599 - L2 LINE L2 -10 3262 3148 1829 134 5 84 chr12 73466150 73466219 -70816270 - L1MA8 LINE L1 -5 6286 6213 2972 131 22 48 chr12 73466219 73466805 -70815684 - L1MA6 LINE L1 -2 6298 5728 1829 134 5 84 chr12 73466805 73467153 -70815336 - L1MA8 LINE L1 -78 6213 5902 301 143 31 102 chr12 73467567 73467665 -70814824 - L1MCa LINE L1 -4362 2064 1974 191 275 29 29 chr12 73470754 73470823 -70811666 - MIR3 SINE MIR -9 199 131 276 242 0 16 chr12 73470823 73470885 -70811604 - MIR SINE MIR -130 78 18 361 235 175 33 chr12 73471909 73472092 -70810397 + L3 LINE CR1 1256 1464 -113 1176 120 111 14 chr12 73472603 73472811 -70809678 + MER30 DNA MER1_type 1 228 -2 32 86 0 0 chr12 73473647 73473728 -70808761 + AT_rich Low_complexity Low_complexity 1 81 0 183 80 0 0 chr12 73473887 73473912 -70808577 + (CAT)n Simple_repeat Simple_repeat 3 27 0 289 329 121 7 chr12 73473950 73474099 -70808390 - MIR SINE MIR -95 167 2 1144 132 0 16 chr12 73474745 73474934 -70807555 + MER83 LTR ERV1 263 448 0 335 61 0 20 chr12 73474934 73474983 -70807506 + MER83-int LTR ERV1 12 59 -4226 * 2953 135 15 2 chr12 73474982 73475442 -70807047 + MER83-int LTR ERV1 22 487 -3798 547 215 154 60 chr12 73475647 73475880 -70806609 - MIR SINE MIR 0 262 8 240 316 36 62 chr12 73475896 73476121 -70806368 - L2 LINE L2 -1035 2279 2061 2205 113 3 16 chr12 73476197 73476507 -70805982 + AluSx SINE Alu 1 306 -6 1297 291 213 6 chr12 73476923 73477469 -70805020 + L2 LINE L2 2301 2959 -355 408 248 110 9 chr12 73477486 73477595 -70804894 - L2 LINE L2 0 3313 3194 733 256 84 32 chr12 73477619 73477904 -70804585 + L2 LINE L2 3014 3313 0 564 228 64 55 chr12 73477914 73478225 -70804264 - HAL1 LINE L1 -1158 1349 1036 418 266 84 19 chr12 73479548 73479702 -70802787 + MIR SINE MIR 5 168 -94 430 197 16 102 chr12 73479773 73479900 -70802589 + MLT2E LTR ERVL 34 149 -479 272 322 29 29 chr12 73479991 73480196 -70802293 + MLT2E LTR ERVL 410 614 -14 901 279 19 5 chr12 73481375 73481688 -70800801 + LTR16A LTR ERVL 90 450 0 2359 67 0 3 chr12 73481817 73482115 -70800374 - AluY SINE Alu -14 297 1 2342 89 0 0 chr12 73482377 73482670 -70799819 - AluSg SINE Alu -17 293 1 2065 92 0 4 chr12 73482849 73483134 -70799355 - AluSg SINE Alu 0 303 20 200 256 70 58 chr12 73484464 73484550 -70797939 + L2 LINE L2 3164 3250 -63 183 264 56 28 chr12 73485277 73485349 -70797140 + L2 LINE L2 3193 3266 -47 654 230 185 0 chr12 73485358 73485695 -70796794 + LTR50 LTR ERVL 295 783 -12 513 276 156 13 chr12 73485759 73485984 -70796505 - L1MC/D LINE L1 -2021 5787 5531 200 35 35 0 chr12 73487486 73487515 -70794974 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 277 264 44 0 chr12 73489296 73489387 -70793102 + MIR SINE MIR 153 247 -15 618 249 169 42 chr12 73489772 73489837 -70792652 - L2 LINE L2 0 3313 3258 5027 72 14 1 chr12 73489837 73490489 -70792000 + PABL_A LTR ERV1 1 660 0 618 249 169 42 chr12 73490489 73490736 -70791753 - L2 LINE L2 -55 3258 2961 306 253 60 0 chr12 73490747 73490830 -70791659 - MIR SINE MIR -135 127 40 355 271 105 15 chr12 73490975 73491108 -70791381 + L2 LINE L2 3169 3313 0 454 221 50 29 chr12 73492080 73492220 -70790269 - Charlie2a DNA MER1_type -2 2860 2718 798 177 65 0 chr12 73492228 73492414 -70790075 - Charlie2a DNA MER1_type -1198 1664 1467 916 238 16 53 chr12 73492578 73492897 -70789592 - Charlie2a DNA MER1_type -2551 311 5 465 200 0 17 chr12 73494989 73495104 -70787385 + L1MB1 LINE L1 6051 6163 -5 26 50 0 0 chr12 73495590 73495630 -70786859 + AT_rich Low_complexity Low_complexity 1 40 0 924 246 94 10 chr12 73499166 73499463 -70783026 - L1ME1 LINE L1 -4 6162 5841 521 242 2 1 chr12 73499475 73499621 -70782868 - L1ME1 LINE L1 -395 5771 5628 249 237 247 11 chr12 73500056 73500149 -70782340 - MIR SINE MIR -64 144 30 425 171 0 0 chr12 73501740 73501810 -70780679 - MER63 DNA MER1_type -315 745 676 2194 88 0 7 chr12 73503192 73503512 -70778977 + AluSg SINE Alu 1 318 0 7204 45 6 0 chr12 73503554 73505009 -70777480 - L1PA5 LINE L1 -1 6153 4696 22 0 0 0 chr12 73505193 73505215 -70777274 + AT_rich Low_complexity Low_complexity 1 22 0 1733 135 38 14 chr12 73506127 73506415 -70776074 - AluSx SINE Alu -17 295 1 488 247 124 6 chr12 73506467 73506645 -70775844 + MIR SINE MIR 64 262 0 756 221 85 30 chr12 73507401 73507600 -70774889 - MER63A DNA MER1_type 0 210 1 1893 150 3 7 chr12 73507918 73508218 -70774271 + AluJb SINE Alu 1 299 -13 329 278 70 35 chr12 73508639 73508754 -70773735 + MIR SINE MIR 13 131 -131 25 0 0 0 chr12 73509381 73509406 -70773083 + AT_rich Low_complexity Low_complexity 1 25 0 1720 150 3 36 chr12 73509602 73509909 -70772580 + AluJo SINE Alu 1 297 -15 239 163 11 152 chr12 73510062 73510093 -70772396 - MER116 DNA Mariner 0 80 46 2276 116 3 0 chr12 73510093 73510396 -70772093 + AluSx SINE Alu 1 304 -8 239 163 11 152 chr12 73510396 73510456 -70772033 - MER116 DNA Mariner -34 46 2 296 283 71 0 chr12 73510564 73510677 -70771812 - MIR SINE MIR -11 251 131 325 318 57 57 chr12 73510722 73510914 -70771575 - MIR SINE MIR -18 244 53 501 145 0 12 chr12 73511854 73511928 -70770561 + FLAM SINE Alu 42 116 -196 279 0 0 0 chr12 73511928 73511959 -70770530 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 539 290 97 55 chr12 73512045 73512283 -70770206 - MIR SINE MIR -13 249 2 25 65 0 0 chr12 73512758 73512804 -70769685 + AT_rich Low_complexity Low_complexity 1 46 0 1327 236 175 21 chr12 73512860 73513473 -70769016 - L1MC4a LINE L1 -1756 6052 5346 518 337 46 62 chr12 73513502 73514006 -70768483 - L1MC4a LINE L1 -908 5238 4743 21 89 0 0 chr12 73515306 73515362 -70767127 + AT_rich Low_complexity Low_complexity 1 56 0 1510 6 0 11 chr12 73515491 73515672 -70766817 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1993 109 11 0 chr12 73515686 73515952 -70766537 - AluSq SINE Alu -44 269 1 518 289 72 24 chr12 73516124 73516290 -70766199 + MIR3 SINE MIR 16 189 -19 443 309 0 9 chr12 73516309 73516419 -70766070 - L2 LINE L2 -16 3297 3189 257 350 42 46 chr12 73516426 73516666 -70765823 + L2 LINE L2 1756 1994 -1320 2896 225 48 2 chr12 73516734 73517355 -70765134 - MER82 DNA MER2_type -1 652 3 1823 79 0 4 chr12 73517559 73517787 -70764702 + AluSq SINE Alu 73 299 -14 186 281 133 37 chr12 73518146 73518281 -70764208 - MIR SINE MIR -2 260 113 191 388 30 55 chr12 73518321 73518592 -70763897 + L2 LINE L2 2804 3067 -205 368 343 112 36 chr12 73518904 73519370 -70763119 + L2 LINE L2 2407 2907 -407 2182 138 0 3 chr12 73519422 73519734 -70762755 - AluSx SINE Alu -1 311 1 326 195 172 39 chr12 73521285 73521413 -70761076 - L3 LINE CR1 -16 1561 1417 305 416 13 7 chr12 73521362 73521511 -70760978 + L2 LINE L2 2720 2869 -445 * 682 224 28 79 chr12 73521527 73521662 -70760827 - L2 LINE L2 -7 3306 3184 2364 109 0 6 chr12 73521662 73521974 -70760515 + AluSx SINE Alu 1 310 -2 682 224 28 79 chr12 73521974 73522052 -70760437 - L2 LINE L2 -129 3184 3104 1990 197 161 8 chr12 73522053 73522545 -70759944 + MLT1F1 LTR MaLR 1 567 0 304 261 33 11 chr12 73522591 73522683 -70759806 - L2 LINE L2 -252 3061 2968 * 482 312 40 123 chr12 73522682 73523153 -70759336 + L2 LINE L2 2840 3271 -1 228 259 194 19 chr12 73523176 73523284 -70759205 + MIR SINE MIR 94 220 -42 214 296 12 62 chr12 73523310 73523391 -70759098 - L3 LINE CR1 -127 1450 1374 446 216 10 0 chr12 73523530 73523627 -70758862 - L1ME1 LINE L1 -5 6161 6064 2210 113 0 3 chr12 73525003 73525295 -70757194 - AluSc SINE Alu -18 291 1 267 31 0 0 chr12 73526200 73526232 -70756257 + (TG)n Simple_repeat Simple_repeat 1 32 0 702 215 64 51 chr12 73526895 73527282 -70755207 + MLT1C LTR MaLR 3 467 0 2247 82 7 0 chr12 73527487 73527778 -70754711 + AluSg1 SINE Alu 2 294 -15 569 205 0 9 chr12 73528512 73528624 -70753865 - FLAM_A SINE Alu -26 116 6 2129 123 17 3 chr12 73528909 73529211 -70753278 - AluSx SINE Alu -6 306 1 21 0 0 0 chr12 73529655 73529676 -70752813 + AT_rich Low_complexity Low_complexity 1 21 0 2310 100 7 3 chr12 73530274 73530584 -70751905 + AluSp SINE Alu 1 311 -2 955 139 96 72 chr12 73530630 73530838 -70751651 - AluJo SINE Alu -14 298 86 25 31 0 0 chr12 73531515 73531547 -70750942 + AT_rich Low_complexity Low_complexity 1 32 0 324 75 15 30 chr12 73531561 73531628 -70750861 + (TA)n Simple_repeat Simple_repeat 1 66 0 613 199 142 7 chr12 73531663 73531804 -70750685 - MIR SINE MIR -92 170 11 727 182 94 18 chr12 73531938 73532108 -70750381 + MER20 DNA MER1_type 36 218 -1 312 259 112 35 chr12 73532109 73532225 -70750264 + L2 LINE L2 3189 3313 0 221 274 0 0 chr12 73532239 73532290 -70750199 + L2 LINE L2 3213 3263 -9 673 71 61 0 chr12 73535621 73535719 -70746770 + L1PA11 LINE L1 6071 6174 0 180 0 0 0 chr12 73535791 73535811 -70746678 + (TG)n Simple_repeat Simple_repeat 2 21 0 432 0 0 0 chr12 73535863 73535911 -70746578 + (TG)n Simple_repeat Simple_repeat 2 49 0 2202 89 0 14 chr12 73535931 73536224 -70746265 + AluSc SINE Alu 1 289 -20 25 31 0 0 chr12 73537438 73537470 -70745019 + AT_rich Low_complexity Low_complexity 1 32 0 2425 93 0 0 chr12 73537801 73538101 -70744388 + AluSx SINE Alu 1 300 -12 1708 164 3 30 chr12 73538310 73538608 -70743881 - AluJb SINE Alu -22 290 1 882 212 39 0 chr12 73538608 73538787 -70743702 + MER5A DNA MER1_type 4 189 0 1955 85 54 0 chr12 73538886 73539144 -70743345 + AluY SINE Alu 27 298 -13 2186 91 3 17 chr12 73539692 73539990 -70742499 - AluSc SINE Alu -15 294 1 227 245 61 0 chr12 73540267 73540316 -70742173 + L2 LINE L2 3217 3268 -4 2071 122 7 7 chr12 73540414 73540710 -70741779 - AluSx SINE Alu -16 296 1 1644 99 0 14 chr12 73540882 73541104 -70741385 - AluSx SINE Alu -93 219 1 2137 107 0 30 chr12 73541173 73541473 -70741016 - AluSx SINE Alu -21 291 1 1774 135 73 21 chr12 73542428 73542768 -70739721 + MER46B DNA MER2_type 2 234 -2 21 0 0 0 chr12 73543470 73543491 -70738998 + AT_rich Low_complexity Low_complexity 1 21 0 2309 99 0 0 chr12 73543508 73543801 -70738688 - AluSx SINE Alu -14 298 6 295 163 49 6 chr12 73544295 73544542 -70737947 + AluJo SINE Alu 1 302 0 510 224 168 7 chr12 73545170 73545313 -70737176 + MER58A DNA MER1_type 31 196 -28 351 227 0 165 chr12 73545431 73545607 -70736882 + HAL1 LINE L1 1308 1454 -1053 2000 130 21 0 chr12 73546116 73546401 -70736088 + AluSg SINE Alu 1 291 -19 371 216 20 29 chr12 73546598 73546700 -70735789 - Charlie2 DNA MER1_type -602 2260 2160 326 219 141 78 chr12 73546700 73546828 -70735661 - L1ME1 LINE L1 -318 5848 5713 374 233 253 13 chr12 73547365 73547515 -70734974 + MIR SINE MIR 1 186 -76 505 227 52 0 chr12 73547518 73547615 -70734874 + L2 LINE L2 3193 3294 -19 2123 90 19 51 chr12 73547705 73548017 -70734472 + AluSx SINE Alu 1 302 -10 2232 70 28 7 chr12 73548110 73548395 -70734094 - AluY SINE Alu -20 291 1 1786 166 7 10 chr12 73551394 73551695 -70730794 + AluJb SINE Alu 5 304 -8 519 228 183 21 chr12 73552210 73552451 -70730038 - L2 LINE L2 -10 3303 3024 2250 105 3 0 chr12 73552565 73552860 -70729629 + AluSc SINE Alu 1 296 -13 2013 138 3 7 chr12 73553743 73554041 -70728448 + AluSx SINE Alu 1 297 -15 25 31 0 0 chr12 73554082 73554114 -70728375 + AT_rich Low_complexity Low_complexity 1 32 0 2257 109 3 6 chr12 73555075 73555388 -70727101 - AluSq SINE Alu -1 312 1 1593 102 0 0 chr12 73555750 73555955 -70726534 + AluSx SINE Alu 1 205 -107 1256 224 59 21 chr12 73555989 73556279 -70726210 + AluJo SINE Alu 6 306 -6 1870 136 0 21 chr12 73556531 73556817 -70725672 + AluSx SINE Alu 13 292 -20 2211 87 11 0 chr12 73556949 73557235 -70725254 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr12 73558106 73558128 -70724361 + AT_rich Low_complexity Low_complexity 1 22 0 552 258 118 35 chr12 73558279 73558508 -70723981 + MIR SINE MIR 9 256 -6 197 326 200 0 chr12 73558602 73558737 -70723752 + L2 LINE L2 2449 2610 -704 2233 112 0 3 chr12 73558819 73559115 -70723374 - AluSg SINE Alu -15 295 1 603 258 0 16 chr12 73559734 73559858 -70722631 + FLAM_A SINE Alu 2 123 -10 1810 156 33 0 chr12 73560270 73560572 -70721917 + AluSx SINE Alu 1 312 0 342 273 13 0 chr12 73560721 73560798 -70721691 - MER81 DNA DNA -36 78 1 1247 158 0 22 chr12 73561809 73562037 -70720452 + AluJb SINE Alu 89 311 -1 297 282 39 0 chr12 73562121 73562199 -70720290 + L2 LINE L2 3232 3312 -1 830 199 11 164 chr12 73562222 73562484 -70720005 + MER58A DNA MER1_type 3 224 0 302 281 55 48 chr12 73562537 73562683 -70719806 + MER117 DNA MER1_type 1 147 -50 1345 167 197 0 chr12 73563425 73563664 -70718825 + AluJb SINE Alu 1 286 -16 186 43 0 0 chr12 73563671 73563694 -70718795 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 841 193 33 0 chr12 73563797 73563947 -70718542 + MER3 DNA MER1_type 2 156 -53 415 338 73 23 chr12 73564182 73564401 -70718088 - LTR67 LTR ERVL -1 556 327 435 223 0 32 chr12 73564487 73564581 -70717908 - LTR67 LTR ERVL -370 187 97 1665 158 10 40 chr12 73564584 73564888 -70717601 - AluJo SINE Alu -17 295 1 198 0 0 0 chr12 73565896 73565918 -70716571 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2331 84 3 10 chr12 73566768 73567064 -70715425 - AluSc SINE Alu -15 294 1 1996 110 3 82 chr12 73567869 73568197 -70714292 - AluSx SINE Alu -10 302 1 2258 100 3 0 chr12 73568664 73568963 -70713526 - AluY SINE Alu -11 300 1 514 199 50 77 chr12 73568983 73569164 -70713325 + MER46C DNA MER2_type 24 199 -139 263 172 16 62 chr12 73569195 73569259 -70713230 + MER46C DNA MER2_type 277 337 -1 760 181 7 7 chr12 73569703 73569841 -70712648 + FLAM_C SINE Alu 2 139 -4 681 281 200 31 chr12 73569898 73570474 -70712015 - L2 LINE L2 0 3313 2574 345 339 122 6 chr12 73570474 73570654 -70711835 - MIR3 SINE MIR -2 206 6 1679 175 51 0 chr12 73571821 73572113 -70710376 + AluJb SINE Alu 6 312 0 2004 103 3 28 chr12 73572210 73572500 -70709989 + AluSx SINE Alu 30 312 0 1655 206 287 6 chr12 73573072 73573587 -70708902 - Charlie1a DNA MER1_type -416 1039 380 1088 164 58 19 chr12 73573587 73573794 -70708695 - AluJo SINE Alu -13 299 85 1499 212 75 22 chr12 73573841 73574199 -70708290 - Charlie1a DNA MER1_type -1072 383 7 2179 93 23 10 chr12 73574316 73574617 -70707872 + AluSg SINE Alu 1 305 -5 1916 139 17 0 chr12 73574641 73574929 -70707560 + AluJb SINE Alu 1 293 -19 1614 153 59 10 chr12 73575839 73575970 -70706519 + AluJb SINE Alu 1 124 -188 2189 95 44 0 chr12 73575970 73576265 -70706224 + AluSx SINE Alu 1 308 -4 1614 153 59 10 chr12 73576265 73576421 -70706068 + AluJb SINE Alu 124 302 -10 2403 65 3 0 chr12 73576442 73576736 -70705753 + AluY SINE Alu 1 295 -16 233 157 39 0 chr12 73576886 73576937 -70705552 + L1MC4 LINE L1 6651 6703 -1339 1198 99 23 6 chr12 73577106 73577277 -70705212 - AluSg/x SINE Alu -17 295 122 306 289 41 21 chr12 73578977 73579074 -70703415 - L2 LINE L2 -27 3286 3188 180 299 161 23 chr12 73579084 73579171 -70703318 - L2 LINE L2 -35 3237 3139 1924 98 3 107 chr12 73579295 73579631 -70702858 - AluSx SINE Alu -11 301 1 215 200 150 0 chr12 73579959 73580019 -70702470 + MIR SINE MIR 81 149 -113 421 207 0 37 chr12 73580196 73580306 -70702183 + MIR3 SINE MIR 104 208 0 304 239 274 61 chr12 73581407 73581717 -70700772 + L1M2 LINE L1 703 1078 -5771 222 169 26 65 chr12 73581848 73581925 -70700564 + (CGGGG)n Simple_repeat Simple_repeat 5 78 0 250 135 123 129 chr12 73583036 73583126 -70699363 - L1MA8 LINE L1 -20 6271 6182 1963 104 47 0 chr12 73583126 73583404 -70699085 - AluSx SINE Alu -21 291 1 2407 48 3 39 chr12 73583413 73583724 -70698765 - AluSp SINE Alu -13 300 1 250 135 123 129 chr12 73583724 73583786 -70698703 - L1MA8 LINE L1 -117 6174 6110 267 341 92 50 chr12 73584146 73584703 -70697786 + L2 LINE L2 2206 2785 -529 196 284 28 73 chr12 73584784 73584893 -70697596 + L2 LINE L2 2917 3020 -252 2238 86 20 20 chr12 73584918 73585221 -70697268 + AluSx SINE Alu 1 303 -9 2030 151 14 43 chr12 73585330 73585595 -70696894 - MER58B DNA MER1_type -2080 340 86 1850 150 3 42 chr12 73585595 73585908 -70696581 + AluJo SINE Alu 1 301 -11 2030 151 14 43 chr12 73585908 73585992 -70696497 - MER58B DNA MER1_type -2334 86 1 856 211 5 68 chr12 73585996 73586100 -70696389 + MER45A DNA AcHobo 1 89 -1492 2397 70 0 3 chr12 73586100 73586399 -70696090 - AluSx SINE Alu -14 298 1 856 211 5 68 chr12 73586399 73586484 -70696005 + MER45A DNA AcHobo 89 178 0 293 216 11 0 chr12 73586558 73586646 -70695843 + CT-rich Low_complexity Low_complexity 1 89 0 1905 142 10 3 chr12 73586646 73586934 -70695555 - AluJb SINE Alu -16 296 7 185 262 0 0 chr12 73586971 73587013 -70695476 + L2 LINE L2 3264 3305 -8 372 289 30 59 chr12 73587047 73587182 -70695307 + MIR SINE MIR 50 180 -82 2273 91 7 26 chr12 73587339 73587647 -70694842 - AluSx SINE Alu -10 302 1 197 176 0 20 chr12 73587937 73587988 -70694501 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1538 176 17 23 chr12 73589338 73589639 -70692850 - AluJo SINE Alu -13 299 1 715 246 129 13 chr12 73589729 73589961 -70692528 + MIR SINE MIR 3 261 -1 2021 114 0 4 chr12 73590232 73590503 -70691986 + AluSq SINE Alu 25 294 -19 765 293 187 29 chr12 73590508 73590999 -70691490 + L2 LINE L2 2005 2573 -741 729 225 44 113 chr12 73591100 73591360 -70691129 - L1MC5 LINE L1 -51 7910 7690 2105 91 0 0 chr12 73591360 73591634 -70690855 + AluY SINE Alu 38 311 0 729 225 44 113 chr12 73591634 73591808 -70690681 - L1MC5 LINE L1 -271 7690 7506 827 184 18 18 chr12 73591808 73591976 -70690513 - FRAM SINE Alu -8 168 1 275 182 61 0 chr12 73592317 73592383 -70690106 - MIR SINE MIR -70 192 123 1108 200 30 70 chr12 73592828 73592928 -70689561 + AluJb SINE Alu 35 138 -174 2632 64 0 0 chr12 73592928 73593241 -70689248 + AluSp SINE Alu 1 313 0 1108 200 30 70 chr12 73593241 73593410 -70689079 + AluJb SINE Alu 138 293 -19 2174 110 3 7 chr12 73593878 73594179 -70688310 - AluSx SINE Alu -12 300 1 843 177 32 0 chr12 73594196 73594354 -70688135 + L1M3 LINE L1 5639 5801 -382 1038 84 84 0 chr12 73594354 73594508 -70687981 + MER2 DNA MER2_type 44 210 -135 310 258 0 0 chr12 73594534 73594600 -70687889 + MER2 DNA MER2_type 280 345 0 2099 97 45 0 chr12 73594600 73594910 -70687579 + L1MB3 LINE L1 5800 6123 -60 1116 131 0 0 chr12 73594910 73595063 -70687426 - AluSg/x SINE Alu -14 296 144 359 161 0 0 chr12 73595064 73595120 -70687369 - AluS SINE Alu -245 57 2 283 155 86 0 chr12 73595123 73595181 -70687308 + L1MB3 LINE L1 6114 6176 -7 612 305 39 9 chr12 73595204 73595437 -70687052 + MIR SINE MIR 20 259 -3 309 273 254 12 chr12 73596056 73596221 -70686268 - MIR SINE MIR -38 224 20 774 244 65 65 chr12 73597362 73597543 -70684946 + MIR SINE MIR 1 184 -78 2273 109 7 0 chr12 73597543 73597846 -70684643 + AluSg SINE Alu 2 306 -4 774 244 65 65 chr12 73597846 73597926 -70684563 + MIR SINE MIR 183 262 0 224 286 0 0 chr12 73598102 73598179 -70684310 + A-rich Low_complexity Low_complexity 1 77 0 * 2417 217 40 67 chr12 73598122 73598280 -70684209 + L1MB7 LINE L1 5028 5189 -995 287 222 16 0 chr12 73598280 73598291 -70684198 + AluSg/x SINE Alu 120 129 -173 1555 146 117 29 chr12 73598291 73598565 -70683924 + AluSx SINE Alu 1 298 -14 1853 159 34 3 chr12 73598568 73598864 -70683625 + AluSx SINE Alu 1 305 -7 2417 217 40 67 chr12 73598616 73599389 -70683100 + L1MB7 LINE L1 5189 5725 -459 2389 92 3 0 chr12 73599389 73599695 -70682794 + AluSq SINE Alu 1 307 -6 2417 217 40 67 chr12 73599695 73600134 -70682355 + L1MB7 LINE L1 5725 6174 -10 290 212 45 0 chr12 73600400 73600466 -70682023 + THE1-int LTR MaLR 1095 1163 -417 193 237 0 0 chr12 73600943 73600981 -70681508 - L2 LINE L2 -7 3265 3228 2468 134 75 17 chr12 73601268 73601468 -70681021 - MSTA LTR MaLR -3 425 238 195 42 0 0 chr12 73601468 73601492 -70680997 + (GA)n Simple_repeat Simple_repeat 2 25 0 2468 134 75 17 chr12 73601492 73601693 -70680796 - MSTA LTR MaLR -190 238 1 7806 148 46 115 chr12 73601693 73602174 -70680315 - MSTA-int LTR MaLR 0 1651 1138 880 138 0 0 chr12 73602174 73602304 -70680185 + AluSq/x SINE Alu 10 139 -174 7806 148 46 115 chr12 73602304 73602863 -70679626 - MSTA-int LTR MaLR -513 1138 644 2026 114 0 7 chr12 73602863 73603136 -70679353 - AluSg SINE Alu -39 271 1 7806 148 46 115 chr12 73603136 73603739 -70678750 - MSTA-int LTR MaLR -1007 644 1 2060 111 50 72 chr12 73603739 73603784 -70678705 - MSTA LTR MaLR 0 428 384 2145 116 18 0 chr12 73603784 73604068 -70678421 + AluSc SINE Alu 1 289 -20 2187 141 0 0 chr12 73604074 73604379 -70678110 + AluSq SINE Alu 1 305 -8 2206 137 0 0 chr12 73604379 73604685 -70677804 + AluSq SINE Alu 1 306 -7 2060 111 50 72 chr12 73604380 73604684 -70677805 - MSTA LTR MaLR -49 379 388 2414 103 0 0 chr12 73604684 73604996 -70677493 + AluSq SINE Alu 1 312 -1 2060 111 50 72 chr12 73604996 73605320 -70677169 - MSTA LTR MaLR -39 389 60 552 274 104 44 chr12 73605633 73605903 -70676586 - L2 LINE L2 0 3313 3028 2364 102 33 18 chr12 73605978 73606310 -70676179 - MER1B DNA MER1_type 0 337 1 193 253 44 99 chr12 73606497 73606588 -70675901 - MER5B DNA MER1_type -10 168 83 879 199 6 0 chr12 73606687 73606843 -70675646 + FRAM SINE Alu 1 153 -23 29 0 0 0 chr12 73606843 73606872 -70675617 + AT_rich Low_complexity Low_complexity 1 29 0 415 252 61 30 chr12 73607153 73607284 -70675205 + L2 LINE L2 1308 1442 -1872 195 42 0 0 chr12 73607462 73607486 -70675003 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2061 174 68 32 chr12 73608948 73609391 -70673098 + LTR2B LTR ERV1 32 490 0 52228 62 30 20 chr12 73609391 73616213 -70666276 + Harlequin LTR ERV1 1 6895 -1 1812 166 139 36 chr12 73616215 73616423 -70666066 + LTR2B LTR ERV1 7 192 -298 222 37 0 0 chr12 73616423 73616450 -70666039 + (TTCTG)n Simple_repeat Simple_repeat 2 28 0 1812 166 139 36 chr12 73616450 73616680 -70665809 + LTR2B LTR ERV1 192 490 0 430 207 0 12 chr12 73617486 73617618 -70664871 - FRAM SINE Alu 0 198 68 2039 144 14 0 chr12 73617810 73618101 -70664388 + AluSq SINE Alu 1 295 -18 3558 275 114 33 chr12 73618103 73619784 -70662705 + L2 LINE L2 1314 3144 -169 387 0 0 0 chr12 73619784 73619827 -70662662 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 185 329 65 26 chr12 73619849 73620004 -70662485 - L2 LINE L2 -538 2776 2616 577 138 0 0 chr12 73620378 73620458 -70662031 - AluS SINE Alu -231 81 2 1567 185 45 11 chr12 73620886 73621173 -70661316 + AluJo SINE Alu 1 297 -15 1620 150 4 0 chr12 73621369 73621623 -70660866 + L1MA2 LINE L1 3955 4209 -1937 233 67 0 0 chr12 73622548 73622578 -70659911 + LTR6A LTR ERV1 73 102 -462 7147 123 14 6 chr12 73622654 73624574 -70657915 + L1MA2 LINE L1 4179 6117 -187 1514 176 75 7 chr12 73624574 73624893 -70657596 - AluJb SINE Alu 0 312 1 1652 107 0 9 chr12 73624938 73625162 -70657327 - AluSx SINE Alu -90 222 1 1391 119 0 0 chr12 73625163 73625365 -70657124 + L1MA1 LINE L1 6101 6302 0 25 31 0 0 chr12 73625365 73625397 -70657092 + AT_rich Low_complexity Low_complexity 1 32 0 184 272 185 0 chr12 73625483 73625575 -70656914 - L2 LINE L2 -1 3312 3204 233 177 16 32 chr12 73625906 73625968 -70656521 + CT-rich Low_complexity Low_complexity 2 62 0 330 26 0 0 chr12 73625969 73626008 -70656481 + (CA)n Simple_repeat Simple_repeat 1 39 0 297 280 93 47 chr12 73627044 73627194 -70655295 + MIR SINE MIR 32 188 -74 299 129 122 0 chr12 73627497 73627644 -70654845 + (TA)n Simple_repeat Simple_repeat 2 166 0 302 278 46 38 chr12 73627700 73627849 -70654640 - MIR SINE MIR -62 146 48 * 670 268 107 77 chr12 73627827 73628193 -70654296 - L2 LINE L2 -44 3269 2893 1309 199 57 24 chr12 73628202 73628499 -70653990 + AluJo SINE Alu 5 311 -1 1807 143 31 10 chr12 73629977 73630270 -70652219 + AluJb SINE Alu 1 299 -13 2507 60 0 0 chr12 73630271 73630573 -70651916 + AluY SINE Alu 2 303 -8 525 297 69 56 chr12 73630573 73630805 -70651684 - MIR SINE MIR -8 254 20 2238 92 0 3 chr12 73632233 73632546 -70649943 - AluSx SINE Alu 0 312 1 444 217 24 0 chr12 73632889 73632972 -70649517 + MER5A DNA MER1_type 6 90 -99 641 39 29 20 chr12 73632991 73633093 -70649396 + (TTTC)n Simple_repeat Simple_repeat 4 106 0 186 103 0 0 chr12 73633252 73633281 -70649208 + (T)n Simple_repeat Simple_repeat 1 29 0 2342 91 0 22 chr12 73635019 73635337 -70647152 - AluY SINE Alu 0 311 1 2057 129 27 0 chr12 73635645 73635939 -70646550 - AluSx SINE Alu -10 302 1 2584 55 0 0 chr12 73636085 73636396 -70646093 - AluY SINE Alu 0 311 1 1279 216 82 0 chr12 73637083 73637352 -70645137 - AluJo SINE Alu -21 291 1 690 166 76 6 chr12 73637357 73637514 -70644975 + Charlie1 DNA MER1_type 2593 2760 -1 2132 139 0 0 chr12 73637644 73637947 -70644542 + AluSx SINE Alu 1 303 -9 2332 94 13 0 chr12 73637947 73638256 -70644233 + AluSp SINE Alu 1 313 0 2584 44 0 0 chr12 73638256 73638551 -70643938 + AluY SINE Alu 1 295 -16 21 0 0 0 chr12 73638747 73638768 -70643721 + AT_rich Low_complexity Low_complexity 1 21 0 309 336 73 39 chr12 73640043 73640275 -70642214 - MIR SINE MIR -3 259 20 1350 242 35 92 chr12 73640331 73640873 -70641616 + MLT1J LTR MaLR 1 511 0 2154 115 3 3 chr12 73641560 73641855 -70640634 - AluSx SINE Alu -17 295 1 1708 202 101 0 chr12 73641860 73642286 -70640203 - Charlie4a DNA MER1_type -1 507 39 2163 130 17 0 chr12 73643298 73643599 -70638890 - AluSq SINE Alu -7 306 1 2021 128 10 7 chr12 73643601 73643897 -70638592 - AluJo SINE Alu -15 297 1 740 274 43 5 chr12 73643935 73644143 -70638346 + MIR SINE MIR 32 247 -15 325 296 0 0 chr12 73644150 73644248 -70638241 + MIR SINE MIR 164 261 -1 1672 164 4 4 chr12 73644327 73644589 -70637900 + AluJo SINE Alu 34 295 -17 387 0 0 0 chr12 73644590 73644633 -70637856 + (CA)n Simple_repeat Simple_repeat 2 44 0 1069 159 55 0 chr12 73645167 73645368 -70637121 + L1MA4 LINE L1 6084 6295 -5 779 213 0 14 chr12 73645627 73645768 -70636721 + FRAM SINE Alu 8 146 -30 534 259 14 49 chr12 73646235 73646378 -70636111 + MIR3 SINE MIR 38 175 -33 244 301 155 0 chr12 73646503 73646606 -70635883 - MIR SINE MIR -33 229 111 223 255 0 0 chr12 73646785 73646832 -70635657 + CT-rich Low_complexity Low_complexity 5 51 0 765 202 8 0 chr12 73647066 73647195 -70635294 + FLAM_A SINE Alu 12 141 -1 208 281 41 50 chr12 73647199 73647320 -70635169 + MIR SINE MIR 52 171 -91 2191 126 0 0 chr12 73647364 73647658 -70634831 + AluSx SINE Alu 1 294 -18 2314 62 4 0 chr12 73647711 73647987 -70634502 + AluSp SINE Alu 1 277 -36 2349 69 10 20 chr12 73647987 73648293 -70634196 + AluY SINE Alu 1 303 -8 512 265 7 44 chr12 73648438 73648574 -70633915 - MIR SINE MIR -110 152 22 2003 138 7 3 chr12 73649099 73649396 -70633093 - AluSx SINE Alu -14 298 1 202 192 19 19 chr12 73649460 73649569 -70632920 + GA-rich Low_complexity Low_complexity 1 109 0 23 0 0 0 chr12 73649711 73649734 -70632755 + AT_rich Low_complexity Low_complexity 1 23 0 883 127 0 8 chr12 73650089 73650223 -70632266 + FLAM_C SINE Alu 1 133 0 34 24 0 0 chr12 73650263 73650304 -70632185 + AT_rich Low_complexity Low_complexity 1 41 0 911 184 7 0 chr12 73650337 73650484 -70632005 + AluJb SINE Alu 145 292 -20 2012 138 17 0 chr12 73650647 73650936 -70631553 + AluSx SINE Alu 1 294 -18 432 141 0 0 chr12 73651720 73651784 -70630705 - AluS SINE Alu -248 65 2 237 287 103 0 chr12 73651963 73652050 -70630439 - MIR SINE MIR -112 150 55 2312 54 3 81 chr12 73652241 73652576 -70629913 + AluY SINE Alu 2 310 -1 1604 178 11 0 chr12 73653045 73653321 -70629168 - AluJo SINE Alu -11 301 23 501 218 117 69 chr12 73653374 73653493 -70628996 + MER117 DNA MER1_type 1 134 -63 2223 111 3 0 chr12 73653493 73653790 -70628699 + AluSq SINE Alu 1 298 -15 501 218 117 69 chr12 73653790 73653858 -70628631 + MER117 DNA MER1_type 134 197 0 2200 102 0 14 chr12 73654087 73654380 -70628109 - AluSq SINE Alu -24 289 1 2517 58 10 3 chr12 73654641 73654950 -70627539 + AluY SINE Alu 1 311 0 28 0 0 0 chr12 73655786 73655814 -70626675 + AT_rich Low_complexity Low_complexity 1 28 0 406 305 12 29 chr12 73655930 73656203 -70626286 + GA-rich Low_complexity Low_complexity 1 268 0 2563 61 0 0 chr12 73656522 73656833 -70625656 + AluY SINE Alu 1 311 0 2452 70 6 10 chr12 73656978 73657290 -70625199 + AluY SINE Alu 1 311 0 195 69 0 0 chr12 73657440 73657469 -70625020 + (T)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr12 73657587 73657611 -70624878 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 528 146 0 0 chr12 73657614 73657696 -70624793 - AluSg/x SINE Alu -30 280 199 1023 159 0 0 chr12 73658129 73658280 -70624209 + AluSg/x SINE Alu 137 287 -25 306 235 35 12 chr12 73658673 73658758 -70623731 + L1ME1 LINE L1 5982 6068 -98 2053 119 21 0 chr12 73658758 73659043 -70623446 + AluSg SINE Alu 1 291 -19 408 223 19 39 chr12 73659241 73659344 -70623145 - Charlie2 DNA MER1_type -602 2260 2160 362 82 0 0 chr12 73659974 73660023 -70622466 - AluY SINE Alu -214 86 38 637 245 55 27 chr12 73660023 73660280 -70622209 + L1MC5 LINE L1 7644 7907 -54 586 175 10 0 chr12 73710636 73710733 -70571756 - AluJ/FLAM SINE Alu -213 99 2 1395 145 14 5 chr12 73711168 73711389 -70571100 + AluJb SINE Alu 82 304 -8 238 133 0 0 chr12 73711417 73711462 -70571027 + L1MB2 LINE L1 6124 6168 -3 2435 95 0 0 chr12 73711858 73712164 -70570325 + AluSq SINE Alu 1 306 -7 2326 92 0 0 chr12 73712811 73713116 -70569373 + AluSx SINE Alu 1 305 0 2360 88 7 7 chr12 73713226 73713532 -70568957 + AluSq SINE Alu 1 306 -7 413 320 125 63 chr12 73713628 73714403 -70568086 - L2 LINE L2 -3 3269 2544 2094 125 3 3 chr12 73714403 73714700 -70567789 + AluJo SINE Alu 1 297 -15 413 320 125 63 chr12 73714700 73714843 -70567646 - L2 LINE L2 -728 2544 2411 2199 134 0 0 chr12 73714843 73715141 -70567348 + AluSx SINE Alu 1 298 -14 413 320 125 63 chr12 73715141 73715386 -70567103 - L2 LINE L2 -861 2411 2043 924 139 0 7 chr12 73715388 73715525 -70566964 + AluJb SINE Alu 1 136 -176 374 276 18 80 chr12 73715621 73715784 -70566705 + MIR3 SINE MIR 49 201 -7 2137 105 6 16 chr12 73715874 73716189 -70566300 - AluSx SINE Alu 0 312 1 222 37 0 0 chr12 73716950 73716977 -70565512 + (TG)n Simple_repeat Simple_repeat 1 27 0 558 215 16 8 chr12 73717937 73718058 -70564431 + L2 LINE L2 3190 3311 -2 1898 169 3 3 chr12 73718098 73718393 -70564096 + AluJb SINE Alu 1 295 -17 214 179 51 128 chr12 73718440 73718488 -70564001 - L2 LINE L2 0 3313 3272 2230 122 0 0 chr12 73718488 73718782 -70563707 - AluSx SINE Alu -18 294 1 214 179 51 128 chr12 73718782 73718811 -70563678 - L2 LINE L2 -41 3272 3242 280 272 162 6 chr12 73719178 73719351 -70563138 + L2 LINE L2 3114 3313 0 916 211 6 0 chr12 73719352 73719518 -70562971 + FAM SINE Alu 1 167 -8 829 191 24 30 chr12 73719650 73719818 -70562671 - FRAM SINE Alu -9 167 1 2457 77 0 3 chr12 73719962 73720273 -70562216 - AluSg SINE Alu 0 310 1 24 0 0 0 chr12 73720339 73720363 -70562126 + AT_rich Low_complexity Low_complexity 1 24 0 210 91 0 0 chr12 73720981 73721014 -70561475 + (A)n Simple_repeat Simple_repeat 1 33 0 2244 120 0 0 chr12 73721260 73721559 -70560930 - AluSx SINE Alu -13 299 1 484 219 0 62 chr12 73721925 73722008 -70560481 + L1ME LINE L1 5595 5669 -452 1123 223 17 50 chr12 73722008 73722308 -70560181 - AluJo SINE Alu -12 290 1 484 219 0 62 chr12 73722308 73722352 -70560137 + L1ME LINE L1 5669 5714 -407 877 120 0 0 chr12 73722362 73722479 -70560010 - FRAM SINE Alu -24 152 36 1145 119 0 48 chr12 73722817 73722985 -70559504 + AluSx SINE Alu 1 160 -152 269 216 0 0 chr12 73723032 73723083 -70559406 - AluJ/monomer SINE Alu -5 297 247 400 100 0 0 chr12 73723083 73723133 -70559356 + (G)n Simple_repeat Simple_repeat 1 50 0 1258 145 107 12 chr12 73723485 73723727 -70558762 - MLT1C LTR MaLR -202 265 1 289 277 62 80 chr12 73723727 73723927 -70558562 - LTR67 LTR ERVL -35 522 327 258 231 19 0 chr12 73724036 73724088 -70558401 - LTR67 LTR ERVL -397 160 108 6943 126 70 9 chr12 73724089 73724586 -70557903 - Tigger3b DNA MER2_type -1797 1231 765 1935 148 0 16 chr12 73724586 73724890 -70557599 - AluJb SINE Alu -13 299 1 6943 126 70 9 chr12 73724890 73725018 -70557471 - Tigger3b DNA MER2_type -2263 765 646 2224 109 17 0 chr12 73725018 73725320 -70557169 - AluSx SINE Alu -5 307 1 6943 126 70 9 chr12 73725320 73725641 -70556848 - Tigger3b DNA MER2_type -2382 646 346 2463 62 0 3 chr12 73725641 73725931 -70556558 - AluY SINE Alu -22 289 1 6943 126 70 9 chr12 73725931 73726143 -70556346 - Tigger3b DNA MER2_type -2682 346 1 1070 146 0 0 chr12 73726251 73726402 -70556087 - AluSx SINE Alu -26 286 136 2061 114 14 4 chr12 73726580 73726891 -70555598 - AluSx SINE Alu 0 314 1 923 138 0 35 chr12 73726894 73727039 -70555450 - AluSx SINE Alu -172 140 1 1997 125 24 7 chr12 73727268 73727563 -70554926 + AluSx SINE Alu 1 300 -12 2362 95 3 0 chr12 73728002 73728306 -70554183 + AluSq SINE Alu 1 305 -8 2195 127 3 7 chr12 73728317 73728624 -70553865 + AluSx SINE Alu 1 306 -6 777 227 0 0 chr12 73728627 73728777 -70553712 - FAM SINE Alu -35 150 1 498 143 0 0 chr12 73729058 73729142 -70553347 - L1 LINE L1 -2426 3720 3637 22 0 0 0 chr12 73729280 73729302 -70553187 + AT_rich Low_complexity Low_complexity 1 22 0 628 259 35 62 chr12 73729541 73729686 -70552803 + MIR SINE MIR 4 139 -123 2633 143 24 9 chr12 73729686 73730106 -70552383 + MSTB LTR MaLR 1 426 0 628 259 35 62 chr12 73730106 73730220 -70552269 + MIR SINE MIR 139 255 -7 1829 173 8 32 chr12 73730318 73730689 -70551800 + MLT1A1 LTR MaLR 4 365 0 677 135 0 10 chr12 73730731 73730835 -70551654 + FLAM_A SINE Alu 25 127 -15 367 276 26 40 chr12 73730841 73730993 -70551496 + L1MB4 LINE L1 5602 5751 -370 390 92 15 15 chr12 73731015 73731080 -70551409 + AluS SINE Alu 1 65 -238 1192 146 127 8 chr12 73731589 73731857 -70550632 + L1MB4 LINE L1 5861 6160 -20 437 118 24 12 chr12 73731899 73731984 -70550505 + L1MB8 LINE L1 6093 6178 0 2266 94 3 3 chr12 73732174 73732471 -70550018 + AluSx SINE Alu 1 297 -15 1845 181 26 0 chr12 73732841 73733145 -70549344 + AluJb SINE Alu 1 312 0 567 175 10 0 chr12 73733181 73733278 -70549211 + AluJ/FLAM SINE Alu 2 99 -213 2099 114 3 7 chr12 73733703 73733992 -70548497 + AluSx SINE Alu 10 297 -15 193 373 10 29 chr12 73734278 73734380 -70548109 - MER5A DNA MER1_type -30 159 60 2210 107 10 10 chr12 73734949 73735259 -70547230 - AluSx SINE Alu -2 310 1 593 138 0 0 chr12 73735259 73735346 -70547143 - AluSp/q SINE Alu -14 299 213 1201 119 0 0 chr12 73735346 73735506 -70546983 - AluSx SINE Alu -152 160 1 2452 102 0 0 chr12 73735507 73735820 -70546669 - AluSq SINE Alu 0 313 1 816 176 12 2 chr12 73735840 73736095 -70546394 + MSTC LTR MaLR 1 319 -109 1712 95 29 8 chr12 73736207 73736448 -70546041 + AluSx SINE Alu 59 304 -8 2135 104 0 26 chr12 73736726 73736861 -70545628 + AluSx SINE Alu 3 140 -172 2277 95 3 7 chr12 73736861 73737167 -70545322 + AluSc SINE Alu 1 305 -4 2135 104 0 26 chr12 73737167 73737339 -70545150 + AluSx SINE Alu 140 302 -10 199 282 99 14 chr12 73737352 73737423 -70545066 + L2 LINE L2 3196 3272 0 212 270 95 0 chr12 73737596 73737659 -70544830 - L2 LINE L2 0 3272 3204 418 129 0 0 chr12 73737692 73737754 -70544735 + AluS SINE Alu 13 74 -237 252 220 17 51 chr12 73737956 73738074 -70544415 + G-rich Low_complexity Low_complexity 3 116 0 208 178 50 59 chr12 73738173 73738274 -70544215 + (CGGGG)n Simple_repeat Simple_repeat 4 103 0 2146 122 10 0 chr12 73738411 73738699 -70543790 + AluSx SINE Alu 1 291 -21 392 207 289 0 chr12 73739055 73739190 -70543299 - MER5A DNA MER1_type -15 174 1 225 83 0 0 chr12 73739402 73739438 -70543051 + (TG)n Simple_repeat Simple_repeat 2 37 0 1790 162 7 17 chr12 73740022 73740312 -70542177 - AluJo SINE Alu -25 287 1 230 235 15 15 chr12 73741048 73741116 -70541373 - L1ME4a LINE L1 -62 6059 5992 352 324 58 0 chr12 73741394 73741567 -70540922 + L1M4 LINE L1 3525 3707 -2439 2470 64 3 0 chr12 73741758 73742054 -70540435 - AluSq SINE Alu -15 298 2 2433 72 0 10 chr12 73742056 73742361 -70540128 - AluY SINE Alu -8 303 2 2246 203 188 91 chr12 73742574 73743166 -70539323 + MLT1E2 LTR MaLR 1 621 -5 2152 95 58 0 chr12 73743723 73744018 -70538471 - AluSx SINE Alu 0 312 1 412 331 98 41 chr12 73744056 73744422 -70538067 + L2 LINE L2 2873 3259 -54 2028 189 92 37 chr12 73744424 73744916 -70537573 + Charlie1a DNA MER1_type 1 519 -936 1659 174 3 20 chr12 73745160 73745458 -70537031 + AluJb SINE Alu 1 293 -19 218 69 0 69 chr12 73745482 73745540 -70536949 + (CAGGG)n Simple_repeat Simple_repeat 2 55 0 242 250 0 0 chr12 73745899 73745959 -70536530 + C-rich Low_complexity Low_complexity 1 60 0 205 280 229 0 chr12 73746769 73746887 -70535602 - MIR SINE MIR -18 244 100 2070 150 3 3 chr12 73746910 73747210 -70535279 + AluSx SINE Alu 1 300 -12 234 240 133 0 chr12 73747227 73747302 -70535187 - L1ME LINE L1 -668 5494 5410 236 290 0 0 chr12 73747666 73747735 -70534754 - L1ME LINE L1 -1116 5030 4962 261 184 0 0 chr12 73748387 73748425 -70534064 + Alu SINE Alu 1 38 -263 621 75 0 0 chr12 73748429 73748509 -70533980 - AluS SINE Alu -233 80 1 2174 120 0 13 chr12 73748535 73748843 -70533646 - AluSx SINE Alu -8 304 1 702 140 7 56 chr12 73748845 73748945 -70533544 - L1M LINE L1 -2390 5395 5303 1187 110 0 23 chr12 73748945 73749118 -70533371 - L1PA10 LINE L1 -3 6165 5997 702 140 7 56 chr12 73749118 73749160 -70533329 - L1M LINE L1 -2482 5303 5260 1538 214 18 0 chr12 73749160 73749445 -70533044 - AluJo SINE Alu -22 290 1 2302 115 0 0 chr12 73749854 73750159 -70532330 - AluSq SINE Alu -8 305 1 2140 120 0 0 chr12 73750223 73750506 -70531983 - AluY SINE Alu -28 283 1 5099 144 16 56 chr12 73750513 73750560 -70531929 - L1MB3 LINE L1 0 6183 6136 1329 160 152 30 chr12 73750560 73750829 -70531660 - AluJo SINE Alu -10 302 1 5099 144 16 56 chr12 73750829 73751661 -70530828 - L1MB3 LINE L1 -47 6136 5350 2191 120 3 3 chr12 73751661 73751970 -70530519 - AluSp SINE Alu -4 309 1 5099 144 16 56 chr12 73751970 73752193 -70530296 - L1MB3 LINE L1 -833 5350 5120 24 53 0 0 chr12 73752343 73752381 -70530108 + AT_rich Low_complexity Low_complexity 1 38 0 2170 133 0 3 chr12 73752785 73753094 -70529395 + AluSx SINE Alu 1 308 -4 21 71 0 0 chr12 73753667 73753709 -70528780 + GC_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr12 73753733 73753769 -70528720 + GC_rich Low_complexity Low_complexity 1 36 0 1978 137 3 14 chr12 73754420 73754713 -70527776 - AluJb SINE Alu -22 290 1 205 310 0 0 chr12 73754713 73754771 -70527718 - MER5C DNA MER1_type -266 58 1 24 0 0 0 chr12 73756509 73756533 -70525956 + AT_rich Low_complexity Low_complexity 1 24 0 1279 87 29 0 chr12 73756975 73757147 -70525342 - AluSp SINE Alu -136 177 1 247 233 27 14 chr12 73757894 73757967 -70524522 + (ACTTG)n Simple_repeat Simple_repeat 2 75 0 298 343 0 0 chr12 73758035 73758140 -70524349 + C-rich Low_complexity Low_complexity 1 105 0 2912 163 29 11 chr12 73758401 73759699 -70522790 + L1PBa LINE L1 310 1848 -5015 2246 206 88 19 chr12 73759875 73760441 -70522048 + MLT1E2 LTR MaLR 42 621 -5 2115 118 10 3 chr12 73761120 73761417 -70521072 + AluSq SINE Alu 1 299 -14 1202 252 113 56 chr12 73761676 73762125 -70520364 + L1M4 LINE L1 3792 4214 -1932 2069 114 0 10 chr12 73762125 73762415 -70520074 + AluSg SINE Alu 21 307 -3 1202 252 113 56 chr12 73762415 73762522 -70519967 + L1M4 LINE L1 4214 4313 -1833 2515 63 0 10 chr12 73762522 73762825 -70519664 + AluY SINE Alu 1 300 -11 1202 252 113 56 chr12 73762825 73763176 -70519313 + L1M4 LINE L1 4313 4752 -1394 1097 133 0 7 chr12 73763389 73763540 -70518949 + AluSq/x SINE Alu 1 150 -162 332 150 17 0 chr12 73763553 73763613 -70518876 + Alu SINE Alu 241 301 0 1796 105 62 29 chr12 73763841 73764148 -70518341 - AluSx SINE Alu 0 316 1 2003 130 34 0 chr12 73764150 73764443 -70518046 - AluSx SINE Alu -9 303 1 2467 97 0 0 chr12 73764619 73764928 -70517561 + AluSx SINE Alu 1 309 -3 1575 152 47 18 chr12 73764994 73765271 -70517218 - AluJb SINE Alu -14 298 14 2335 97 0 0 chr12 73767424 73767724 -70514765 - AluSg SINE Alu -10 300 1 2084 90 17 23 chr12 73768264 73768565 -70513924 - AluSx SINE Alu -13 299 1 21 0 0 0 chr12 73768981 73769002 -70513487 + GC_rich Low_complexity Low_complexity 1 21 0 335 259 65 52 chr12 73770787 73770987 -70511502 - L1MC4a LINE L1 -271 5850 5636 2227 112 7 0 chr12 73770992 73771297 -70511192 + AluSq SINE Alu 1 307 -6 2434 66 0 0 chr12 73771418 73771723 -70510766 - AluY SINE Alu 0 305 1 2280 103 3 7 chr12 73771819 73772129 -70510360 - AluSp SINE Alu -4 309 1 22 0 0 0 chr12 73772415 73772437 -70510052 + AT_rich Low_complexity Low_complexity 1 22 0 2226 107 10 0 chr12 73772566 73772864 -70509625 - AluSg SINE Alu -9 301 1 1102 116 0 0 chr12 73772864 73773010 -70509479 - AluSq/x SINE Alu -167 146 1 25 90 0 0 chr12 73773183 73773250 -70509239 + AT_rich Low_complexity Low_complexity 1 67 0 639 172 14 41 chr12 73773567 73773712 -70508777 - FLAM_C SINE Alu -1 142 2 237 305 0 0 chr12 73773726 73773785 -70508704 + MER58 DNA MER1_type 169 227 -2193 291 137 59 0 chr12 73773815 73773866 -70508623 + MER58 DNA MER1_type 2366 2419 -1 235 358 25 0 chr12 73773901 73773982 -70508507 + L2 LINE L2 3186 3268 -4 277 365 0 20 chr12 73774006 73774186 -70508303 + MIR3 SINE MIR 3 176 -56 214 218 35 35 chr12 73774350 73774437 -70508052 + GA-rich Low_complexity Low_complexity 4 90 0 362 240 256 0 chr12 73775688 73775813 -70506676 + MER63A DNA MER1_type 15 171 -39 2402 97 0 0 chr12 73775813 73776113 -70506376 - AluSg SINE Alu -10 300 1 1754 192 20 7 chr12 73776209 73776511 -70505978 + AluJb SINE Alu 1 306 -6 1603 167 27 7 chr12 73776627 73776920 -70505569 - AluJb SINE Alu -13 299 1 547 40 27 0 chr12 73777183 73777258 -70505231 - L1PA3 LINE L1 0 6155 6079 469 216 122 52 chr12 73777499 73777516 -70504973 - MER20B DNA MER1_type -5 778 764 2348 90 0 0 chr12 73777516 73777805 -70504684 - AluSx SINE Alu -19 293 5 469 216 122 52 chr12 73777805 73778000 -70504489 - MER20B DNA MER1_type -19 764 551 266 333 137 15 chr12 73778137 73778407 -70504082 + L2 LINE L2 2351 2653 -661 21 0 0 0 chr12 73779074 73779095 -70503394 + GC_rich Low_complexity Low_complexity 1 21 0 1966 114 10 10 chr12 73779707 73779997 -70502492 + AluSg SINE Alu 13 302 -8 424 260 86 54 chr12 73780224 73780507 -70501982 - L1MC4 LINE L1 -314 7728 7325 1869 167 3 0 chr12 73782052 73782340 -70500149 + AluJo SINE Alu 1 289 -23 2392 78 7 0 chr12 73782523 73782819 -70499670 + AluSg SINE Alu 1 298 -12 792 172 14 7 chr12 73783220 73783332 -70499157 + MER2 DNA MER2_type 2 117 -228 1780 154 20 10 chr12 73783332 73783625 -70498864 - AluSx SINE Alu -16 296 1 792 172 14 7 chr12 73783625 73783657 -70498832 + MER2 DNA MER2_type 117 147 -198 620 151 24 32 chr12 73783702 73783828 -70498661 + MER2 DNA MER2_type 136 260 -85 715 173 0 0 chr12 73783831 73783941 -70498548 - AluJb SINE Alu -20 292 183 696 205 176 5 chr12 73784686 73784891 -70497598 - Charlie4a DNA MER1_type -1 507 268 2180 121 0 3 chr12 73784896 73785193 -70497296 - AluSx SINE Alu -16 296 1 233 179 0 15 chr12 73785203 73785270 -70497219 - L1PA15 LINE L1 0 6165 6100 4720 135 42 1 chr12 73785275 73786018 -70496471 - L1PA15 LINE L1 -25 6140 5368 207 69 0 0 chr12 73786178 73786207 -70496282 + (CA)n Simple_repeat Simple_repeat 2 30 0 1489 90 0 72 chr12 73786981 73787204 -70495285 + AluSx SINE Alu 1 207 -105 1371 150 17 39 chr12 73787514 73787747 -70494742 - AluJb SINE Alu -84 228 1 2225 99 24 0 chr12 73788095 73788389 -70494100 - AluSq SINE Alu -12 301 1 2311 98 10 0 chr12 73788472 73788768 -70493721 - AluSq SINE Alu -14 299 1 1793 118 63 4 chr12 73788801 73789071 -70493418 - AluSg SINE Alu -18 292 7 1321 153 0 0 chr12 73789100 73789289 -70493200 - AluSx SINE Alu -121 191 3 758 151 32 0 chr12 73789377 73789503 -70492986 - AluSq/x SINE Alu -181 132 3 25 90 0 0 chr12 73789678 73789745 -70492744 + AT_rich Low_complexity Low_complexity 1 67 0 639 172 14 41 chr12 73790062 73790207 -70492282 - FLAM_C SINE Alu -1 142 2 237 305 0 0 chr12 73790221 73790280 -70492209 + MER58 DNA MER1_type 169 227 -2193 291 137 59 0 chr12 73790310 73790361 -70492128 + MER58 DNA MER1_type 2366 2419 -1 235 358 25 0 chr12 73790396 73790477 -70492012 + L2 LINE L2 3186 3268 -4 277 359 0 20 chr12 73790501 73790681 -70491808 + MIR3 SINE MIR 3 176 -56 1858 211 88 29 chr12 73791306 73791516 -70490973 - Charlie4a DNA MER1_type -1454 507 311 2150 128 0 3 chr12 73791516 73791813 -70490676 - AluSx SINE Alu -16 296 1 1858 211 88 29 chr12 73791813 73792081 -70490408 - Charlie4a DNA MER1_type -1650 311 1 1915 159 0 3 chr12 73792890 73793198 -70489291 - AluJb SINE Alu -1 311 5 2047 130 48 0 chr12 73793823 73794116 -70488373 - AluSg SINE Alu -3 307 1 332 326 62 7 chr12 73794543 73794687 -70487802 + MIR SINE MIR 9 160 -102 2150 95 10 20 chr12 73794926 73795221 -70487268 + AluSp SINE Alu 1 292 -21 22 35 0 0 chr12 73795221 73795250 -70487239 + AT_rich Low_complexity Low_complexity 1 29 0 401 158 0 0 chr12 73795250 73795326 -70487163 - Alu SINE Alu -6 305 230 1739 126 63 4 chr12 73795480 73795750 -70486739 - AluSg SINE Alu -18 292 7 1316 158 0 0 chr12 73795779 73795969 -70486520 - AluSx SINE Alu -121 191 2 2173 119 0 3 chr12 73796063 73796358 -70486131 + AluSx SINE Alu 5 298 -14 2338 87 10 0 chr12 73797380 73797680 -70484809 + AluY SINE Alu 1 303 -8 2461 99 0 0 chr12 73798375 73798687 -70483802 + AluSx SINE Alu 1 312 0 415 232 40 0 chr12 73798709 73798808 -70483681 + L1ME LINE L1 5622 5724 -397 1655 110 22 92 chr12 73798903 73799048 -70483441 + AluY SINE Alu 1 114 -197 2004 85 4 0 chr12 73799048 73799306 -70483183 + AluY SINE Alu 51 309 -2 1655 110 22 92 chr12 73799306 73799477 -70483012 + AluY SINE Alu 114 295 -16 472 290 196 16 chr12 73799501 73799846 -70482643 - L2 LINE L2 -230 3083 2681 470 123 0 3 chr12 73800128 73800371 -70482118 + AluSq SINE Alu 1 308 -5 243 79 0 0 chr12 73800546 73800584 -70481905 + (T)n Simple_repeat Simple_repeat 1 38 0 1161 220 116 31 chr12 73800644 73801018 -70481471 + L1M4 LINE L1 4798 5241 -921 2038 139 3 10 chr12 73801018 73801321 -70481168 + AluJb SINE Alu 1 301 -11 1161 220 116 31 chr12 73801321 73801521 -70480968 + L1M4 LINE L1 5241 5423 -739 2273 110 0 0 chr12 73803138 73803438 -70479051 + AluSg SINE Alu 1 300 -10 234 0 0 0 chr12 73804591 73804617 -70477872 + (T)n Simple_repeat Simple_repeat 1 26 0 2283 82 24 0 chr12 73804700 73804994 -70477495 + AluSp SINE Alu 1 301 -12 1970 140 13 29 chr12 73805342 73805656 -70476833 + AluJb SINE Alu 1 309 -3 398 228 50 10 chr12 73805688 73805789 -70476700 - MIR SINE MIR -62 200 96 553 157 0 0 chr12 73805933 73806016 -70476473 + AluJ/FLAM SINE Alu 1 83 -229 21 0 0 0 chr12 73806180 73806201 -70476288 + GC_rich Low_complexity Low_complexity 1 21 0 400 305 113 54 chr12 73806811 73807050 -70475439 + MIR SINE MIR 9 261 -1 2149 92 10 20 chr12 73807194 73807489 -70475000 + AluSp SINE Alu 1 292 -21 22 35 0 0 chr12 73807489 73807518 -70474971 + AT_rich Low_complexity Low_complexity 1 29 0 2092 133 13 0 chr12 73807518 73807820 -70474669 - AluSx SINE Alu -6 306 1 182 61 0 30 chr12 73808269 73808302 -70474187 + (TATAA)n Simple_repeat Simple_repeat 5 36 0 27 49 0 0 chr12 73808302 73808343 -70474146 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr12 73808408 73808434 -70474055 + AT_rich Low_complexity Low_complexity 1 26 0 1877 117 106 4 chr12 73808485 73808758 -70473731 - AluSx SINE Alu -11 301 1 409 250 22 66 chr12 73809059 73809195 -70473294 + L2 LINE L2 3184 3313 0 2132 112 3 13 chr12 73809216 73809521 -70472968 - AluSp SINE Alu -11 302 1 314 240 256 0 chr12 73810646 73810771 -70471718 + MER63A DNA MER1_type 15 171 -39 2217 110 3 3 chr12 73810771 73811070 -70471419 - AluSg SINE Alu -9 301 3 1796 192 19 7 chr12 73811167 73811475 -70471014 + AluJb SINE Alu 1 312 0 1598 167 27 7 chr12 73811585 73811878 -70470611 - AluJb SINE Alu -13 299 1 525 40 27 0 chr12 73812140 73812215 -70470274 - L1PA3 LINE L1 0 6155 6079 386 221 122 52 chr12 73812456 73812473 -70470016 - MER20B DNA MER1_type -5 778 764 2326 93 0 0 chr12 73812473 73812763 -70469726 - AluSx SINE Alu -18 294 5 386 221 122 52 chr12 73812763 73812958 -70469531 - MER20B DNA MER1_type -19 764 551 323 334 216 20 chr12 73813095 73813442 -70469047 + L2 LINE L2 2351 2765 -549 194 363 24 32 chr12 73813630 73813754 -70468735 + L2 LINE L2 2858 2980 -292 21 0 0 0 chr12 73814032 73814053 -70468436 + GC_rich Low_complexity Low_complexity 1 21 0 2002 108 4 11 chr12 73814665 73814943 -70467546 + AluSg SINE Alu 13 288 -22 24 32 0 0 chr12 73815003 73815034 -70467455 + AT_rich Low_complexity Low_complexity 1 31 0 2273 84 13 0 chr12 73815098 73815397 -70467092 + AluY SINE Alu 1 303 -8 327 301 174 21 chr12 73815466 73815702 -70466787 + L1ME LINE L1 4748 5019 -1127 2428 103 0 0 chr12 73816092 73816404 -70466085 + AluSx SINE Alu 1 312 0 386 232 40 0 chr12 73816426 73816525 -70465964 + L1ME LINE L1 5622 5724 -397 2138 113 0 10 chr12 73816620 73816922 -70465567 + AluY SINE Alu 1 299 -12 329 171 53 188 chr12 73816952 73817122 -70465367 - L1MC/D LINE L1 -2332 5476 5330 225 275 0 0 chr12 73817380 73817449 -70465040 - L1MC/D LINE L1 -1116 5030 4962 1932 154 3 3 chr12 73817574 73817866 -70464623 + AluSx SINE Alu 1 292 -20 1038 143 35 59 chr12 73818097 73818300 -70464189 + AluJb SINE Alu 86 283 -29 231 36 0 0 chr12 73818303 73818331 -70464158 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2220 114 7 0 chr12 73819211 73819509 -70462980 + AluSx SINE Alu 1 300 -12 1215 98 113 10 chr12 73819692 73819896 -70462593 - MER30 DNA MER1_type 0 230 6 230 286 0 36 chr12 73820222 73820278 -70462211 - L2 LINE L2 -57 3215 3162 2105 113 10 0 chr12 73820432 73820723 -70461766 - AluSx SINE Alu -16 296 3 3457 139 65 2 chr12 73820828 73821426 -70461063 - LTR9B LTR ERV1 0 644 9 2209 93 3 10 chr12 73821511 73821813 -70460676 + AluSq SINE Alu 1 300 -13 214 283 33 76 chr12 73822112 73822204 -70460285 - MIR SINE MIR -155 107 20 1528 183 7 33 chr12 73822242 73822543 -70459946 - AluJb SINE Alu -19 293 1 2547 65 0 0 chr12 73822570 73822876 -70459613 + AluY SINE Alu 1 306 -5 487 189 30 0 chr12 73822876 73823179 -70459310 + (TA)n Simple_repeat Simple_repeat 1 312 0 928 190 93 5 chr12 73823303 73823508 -70458981 - MER58A DNA MER1_type 0 224 2 239 282 54 141 chr12 73823817 73823886 -70458603 - MIR3 SINE MIR -40 168 95 2057 126 3 3 chr12 73823886 73824179 -70458310 + AluSx SINE Alu 1 293 -19 2196 129 0 0 chr12 73824180 73824475 -70458014 + AluSx SINE Alu 1 295 -17 239 282 54 141 chr12 73824475 73824552 -70457937 - MIR3 SINE MIR -112 96 33 344 299 30 81 chr12 73826070 73826267 -70456222 - HAL1 LINE L1 -110 2397 2211 2011 152 10 0 chr12 73826681 73826977 -70455512 - AluSx SINE Alu -13 299 1 1968 139 17 14 chr12 73827086 73827381 -70455108 - AluJb SINE Alu -16 296 1 21 71 0 0 chr12 73827707 73827749 -70454740 + AT_rich Low_complexity Low_complexity 1 42 0 286 306 252 0 chr12 73827984 73828131 -70454358 - L2 LINE L2 -2931 383 200 821 204 15 15 chr12 73828649 73828850 -70453639 - L1MA9 LINE L1 -39 6273 6073 2312 83 0 0 chr12 73829881 73830170 -70452319 - AluY SINE Alu -22 289 1 1828 121 40 4 chr12 73830225 73830533 -70451956 - AluSx SINE Alu 0 318 1 2133 137 3 7 chr12 73830562 73830862 -70451627 - AluSx SINE Alu -3 309 11 810 99 0 33 chr12 73831005 73831126 -70451363 - FLAM_C SINE Alu -15 118 2 189 0 0 0 chr12 73833022 73833043 -70449446 + (GA)n Simple_repeat Simple_repeat 1 21 0 464 173 105 8 chr12 73833063 73833196 -70449293 + L1MA5A LINE L1 6146 6291 -6 2002 126 13 16 chr12 73834477 73834786 -70447703 - AluSx SINE Alu -4 308 1 1144 178 26 132 chr12 73835482 73835689 -70446800 - AluYb8 SINE Alu -2 306 148 2131 89 11 14 chr12 73835689 73835971 -70446518 - AluSg SINE Alu -29 281 1 1144 178 26 132 chr12 73835971 73836105 -70446384 - AluYb8 SINE Alu -160 148 1 191 270 0 32 chr12 73836548 73836611 -70445878 + MIR SINE MIR 190 250 -12 566 149 0 0 chr12 73836702 73836789 -70445700 - AluJ/FRAM SINE Alu -10 302 216 269 182 0 18 chr12 73836789 73836844 -70445645 - AluSp SINE Alu -126 177 124 317 161 46 0 chr12 73836844 73836931 -70445558 + (TA)n Simple_repeat Simple_repeat 1 91 0 750 156 0 47 chr12 73836932 73837060 -70445429 - FLAM_C SINE Alu -19 124 3 2488 52 0 3 chr12 73837167 73837472 -70445017 - AluY SINE Alu -7 304 1 1312 169 146 8 chr12 73837602 73837862 -70444627 + AluJo SINE Alu 1 296 -6 1805 131 64 3 chr12 73837902 73838185 -70444304 - AluSx SINE Alu -12 300 1 2234 101 0 14 chr12 73838433 73838730 -70443759 - AluSg SINE Alu -17 293 1 2071 127 24 0 chr12 73838813 73839105 -70443384 - AluSq SINE Alu -14 299 1 551 108 43 0 chr12 73840020 73840113 -70442376 - AluJ/FLAM SINE Alu -215 97 1 189 121 0 0 chr12 73840124 73840157 -70442332 + (T)n Simple_repeat Simple_repeat 1 33 0 1768 177 6 22 chr12 73840217 73840386 -70442103 - AluJb SINE Alu -6 306 143 2307 102 3 0 chr12 73840386 73840681 -70441808 - AluSp SINE Alu -17 296 1 1768 177 6 22 chr12 73840681 73840822 -70441667 - AluJb SINE Alu -169 143 1 1905 156 3 0 chr12 73841279 73841568 -70440921 + AluJo SINE Alu 3 292 -20 1027 148 35 59 chr12 73841799 73842033 -70440456 + AluJb SINE Alu 86 314 0 2211 114 7 0 chr12 73842914 73843211 -70439278 + AluSx SINE Alu 1 299 -13 1173 108 113 10 chr12 73843394 73843598 -70438891 - MER30 DNA MER1_type 0 230 6 230 286 0 36 chr12 73843924 73843980 -70438509 - L2 LINE L2 -57 3215 3162 2105 113 10 0 chr12 73844134 73844425 -70438064 - AluSx SINE Alu -16 296 3 1861 169 29 3 chr12 73844530 73844874 -70437615 - LTR9B LTR ERV1 0 644 292 350 301 31 77 chr12 73845329 73845525 -70436964 - HAL1 LINE L1 -110 2397 2211 21 0 0 0 chr12 73845884 73845905 -70436584 + GC_rich Low_complexity Low_complexity 1 21 0 474 194 5 63 chr12 73845975 73846166 -70436323 + C-rich Low_complexity Low_complexity 1 180 0 1380 277 132 9 chr12 73846347 73846545 -70435944 + L2 LINE L2 2095 2267 -1047 1003 176 0 0 chr12 73846545 73846710 -70435779 + FRAM SINE Alu 1 165 -1 1380 277 132 9 chr12 73846710 73847008 -70435481 + L2 LINE L2 2267 2664 -650 739 176 91 52 chr12 73847008 73847218 -70435271 + MER20 DNA MER1_type 1 218 -1 1380 277 132 9 chr12 73847218 73847258 -70435231 + L2 LINE L2 2664 2698 -616 863 131 16 0 chr12 73847281 73847403 -70435086 - FLAM_C SINE Alu -19 124 1 1213 230 169 21 chr12 73847407 73847969 -70434520 + L2 LINE L2 2689 3311 -2 180 211 0 0 chr12 73847975 73848013 -70434476 + L2 LINE L2 3276 3313 0 867 299 45 6 chr12 73848044 73848285 -70434204 + MIR SINE MIR 10 256 -6 828 111 0 22 chr12 73848479 73848614 -70433875 - FLAM_C SINE Alu -1 132 1 2090 144 7 0 chr12 73848951 73849250 -70433239 - AluSx SINE Alu -11 301 1 1968 139 17 14 chr12 73849359 73849654 -70432835 - AluJb SINE Alu -16 296 1 21 71 0 0 chr12 73849981 73850023 -70432466 + AT_rich Low_complexity Low_complexity 1 42 0 286 306 252 0 chr12 73850258 73850405 -70432084 - L2 LINE L2 -2931 383 200 861 197 32 41 chr12 73850902 73851120 -70431369 - L1MA9 LINE L1 -24 6288 6073 2349 83 0 0 chr12 73852150 73852439 -70430050 - AluY SINE Alu -22 289 1 1854 121 40 4 chr12 73852494 73852802 -70429687 - AluSx SINE Alu 0 318 1 2330 78 41 0 chr12 73852831 73853124 -70429365 - AluYa5 SINE Alu -6 305 1 354 279 79 0 chr12 73853136 73853276 -70429213 - L2 LINE L2 -1024 2290 2140 284 244 11 11 chr12 73853479 73853569 -70428920 + L1MC4 LINE L1 6614 6703 -1339 267 173 0 0 chr12 73853553 73853605 -70428884 - L1MC4 LINE L1 -1339 6703 6652 * 1132 121 0 0 chr12 73853640 73853789 -70428700 - AluSg/x SINE Alu -30 280 132 2456 68 3 0 chr12 73853958 73854252 -70428237 - AluSp SINE Alu -18 295 1 1895 159 10 0 chr12 73854639 73854929 -70427560 + AluSx SINE Alu 1 293 -19 360 339 69 43 chr12 73855204 73855437 -70427052 - MIR SINE MIR -16 246 8 2167 81 3 21 chr12 73855532 73855817 -70426672 + AluSp SINE Alu 1 280 -33 264 91 0 0 chr12 73855817 73855861 -70426628 + (CA)n Simple_repeat Simple_repeat 1 44 0 21 57 0 0 chr12 73855866 73855901 -70426588 + AT_rich Low_complexity Low_complexity 1 35 0 392 225 202 0 chr12 73855974 73856103 -70426386 + MIR SINE MIR 107 261 -1 279 160 20 0 chr12 73856773 73856823 -70425666 - Alu SINE Alu -251 51 1 422 294 31 0 chr12 73856954 73857118 -70425371 + MIR SINE MIR 23 190 -67 2216 98 14 0 chr12 73857818 73858114 -70424375 + AluSx SINE Alu 1 300 -12 180 273 0 0 chr12 73860978 73861022 -70421467 - L2 LINE L2 -12 3260 3217 22 70 0 0 chr12 73861033 73861076 -70421413 + AT_rich Low_complexity Low_complexity 1 43 0 2516 68 7 0 chr12 73862046 73862353 -70420136 + AluSp SINE Alu 1 309 -4 715 161 0 23 chr12 73864402 73864532 -70417957 + FLAM_A SINE Alu 4 130 -3 23 0 0 0 chr12 73865071 73865094 -70417395 + AT_rich Low_complexity Low_complexity 1 23 0 2316 86 0 19 chr12 73865186 73865499 -70416990 + AluY SINE Alu 1 307 -4 183 111 0 0 chr12 73866337 73866364 -70416125 - MIR SINE MIR -116 146 120 2292 94 0 31 chr12 73866404 73866724 -70415765 - AluSx SINE Alu -2 310 1 407 180 0 14 chr12 73867595 73867734 -70414755 + GA-rich Low_complexity Low_complexity 1 137 0 334 214 162 60 chr12 73868146 73868263 -70414226 - L2 LINE L2 -5 3308 3180 729 263 110 43 chr12 73868540 73868727 -70413762 - L2 LINE L2 -600 2714 2541 2251 101 0 10 chr12 73868727 73869023 -70413466 - AluSx SINE Alu -19 293 1 729 263 110 43 chr12 73869023 73869299 -70413190 - L2 LINE L2 -773 2541 2220 2061 122 26 7 chr12 73869593 73869896 -70412593 - AluSx SINE Alu -3 309 1 2270 116 0 10 chr12 73871013 73871323 -70411166 - AluSx SINE Alu -1 311 5 30 32 0 48 chr12 73872944 73873007 -70409482 + AT_rich Low_complexity Low_complexity 1 60 0 516 303 23 18 chr12 73873434 73873655 -70408834 - MIR SINE MIR 0 262 41 24 32 0 0 chr12 73874302 73874333 -70408156 + AT_rich Low_complexity Low_complexity 1 31 0 908 129 0 0 chr12 73874334 73874458 -70408031 - AluJb SINE Alu -188 124 1 301 258 67 0 chr12 73874602 73874691 -70407798 + MIR SINE MIR 96 190 -72 1884 194 0 3 chr12 73874733 73875042 -70407447 - AluJb SINE Alu -4 308 1 24 32 0 0 chr12 73875579 73875610 -70406879 + AT_rich Low_complexity Low_complexity 1 31 0 873 128 0 8 chr12 73875611 73875736 -70406753 - AluJb SINE Alu -188 124 1 367 228 50 10 chr12 73875880 73875981 -70406508 + MIR SINE MIR 96 200 -62 1971 140 13 29 chr12 73876013 73876327 -70406162 - AluJb SINE Alu -3 309 1 2245 92 24 0 chr12 73876675 73876969 -70405520 - AluSp SINE Alu -12 301 1 225 0 0 0 chr12 73877052 73877077 -70405412 + (A)n Simple_repeat Simple_repeat 1 25 0 2073 109 4 0 chr12 73877380 73877654 -70404835 - AluSx SINE Alu -17 295 21 2092 113 10 10 chr12 73879303 73879603 -70402886 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr12 73879632 73879653 -70402836 + AT_rich Low_complexity Low_complexity 1 21 0 1790 162 7 17 chr12 73879870 73880160 -70402329 + AluJo SINE Alu 1 287 -25 225 83 0 0 chr12 73880744 73880780 -70401709 + (CA)n Simple_repeat Simple_repeat 2 37 0 384 207 289 0 chr12 73880992 73881127 -70401362 + MER5A DNA MER1_type 1 174 -15 2043 110 0 35 chr12 73881465 73881780 -70400709 - AluSx SINE Alu 0 309 5 387 279 179 10 chr12 73882640 73882841 -70399648 - MIR SINE MIR -21 241 7 450 274 82 0 chr12 73883888 73884023 -70398466 + Charlie8 DNA MER1_type 104 249 -2168 203 250 290 32 chr12 73884136 73884260 -70398229 + L2 LINE L2 3116 3271 -1 718 195 32 0 chr12 73885909 73886063 -70396426 + MLT1G LTR MaLR 432 590 0 250 307 0 55 chr12 73886356 73886483 -70396006 - L2 LINE L2 -33 3280 3161 2361 90 7 3 chr12 73887393 73887693 -70394796 - AluSx SINE Alu -11 301 1 371 133 17 0 chr12 73887879 73887939 -70394550 - FLAM SINE Alu -3 130 70 1219 147 4 34 chr12 73888536 73888774 -70393715 + AluSp SINE Alu 1 231 -82 414 195 11 11 chr12 73889314 73889401 -70393088 - AluS SINE Alu -224 88 2 30 0 0 0 chr12 73889446 73889476 -70393013 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr12 73889627 73889671 -70392818 + AT_rich Low_complexity Low_complexity 1 44 0 2325 90 0 7 chr12 73889684 73889983 -70392506 - AluSq SINE Alu -16 297 1 185 179 0 36 chr12 73890182 73890238 -70392251 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2201 127 0 0 chr12 73890286 73890586 -70391903 - AluSg SINE Alu -10 300 1 24 53 0 0 chr12 73890597 73890635 -70391854 + AT_rich Low_complexity Low_complexity 1 38 0 236 269 56 28 chr12 73890657 73890765 -70391724 - L1MC/D LINE L1 -2004 5804 5694 917 208 0 0 chr12 73890769 73890928 -70391561 + FRAM SINE Alu 5 163 -13 2174 120 0 10 chr12 73891292 73891592 -70390897 - AluSx SINE Alu -15 297 1 23 0 0 0 chr12 73891645 73891668 -70390821 + AT_rich Low_complexity Low_complexity 1 23 0 192 125 0 0 chr12 73891686 73891718 -70390771 + (T)n Simple_repeat Simple_repeat 1 32 0 1416 146 0 23 chr12 73891738 73891958 -70390531 - AluJo SINE Alu -30 282 68 368 191 0 83 chr12 73892297 73892381 -70390108 - MER2 DNA MER2_type -1 344 268 2340 99 3 0 chr12 73894602 73894906 -70387583 - AluSx SINE Alu -7 305 1 2203 78 11 7 chr12 73895612 73895894 -70386595 + AluY SINE Alu 17 299 -12 209 262 0 0 chr12 73896205 73896247 -70386242 - L2 LINE L2 -75 3238 3197 1008 215 104 49 chr12 73896285 73896363 -70386126 - MER2 DNA MER2_type 0 344 272 2303 102 13 0 chr12 73896363 73896668 -70385821 + AluSg SINE Alu 1 309 -1 1008 215 104 49 chr12 73896668 73896915 -70385574 - MER2 DNA MER2_type -72 272 1 1606 123 22 95 chr12 73896962 73897108 -70385381 + AluY SINE Alu 1 113 -198 1958 85 4 8 chr12 73897108 73897366 -70385123 + AluY SINE Alu 51 307 -4 1606 123 22 95 chr12 73897366 73897536 -70384953 + AluY SINE Alu 113 294 -17 1167 160 0 6 chr12 73897558 73897739 -70384750 + AluSg/x SINE Alu 104 283 -27 327 230 0 23 chr12 73897799 73897886 -70384603 + L1MC4a LINE L1 5846 5930 -1878 2232 85 17 7 chr12 73897893 73898186 -70384303 + AluSc SINE Alu 1 296 -13 240 35 0 0 chr12 73898202 73898231 -70384258 + (TG)n Simple_repeat Simple_repeat 1 29 0 266 323 30 42 chr12 73898394 73898561 -70383928 + L1ME4a LINE L1 5894 6058 -63 649 294 48 21 chr12 73898725 73899141 -70383348 - MLT1K LTR MaLR -19 569 63 816 154 0 29 chr12 73899414 73899550 -70382939 + FLAM_C SINE Alu 1 132 -1 426 20 0 0 chr12 73899613 73899664 -70382825 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2182 112 0 0 chr12 73899668 73899955 -70382534 - AluSx SINE Alu -25 287 1 21 71 0 0 chr12 73903270 73903312 -70379177 + AT_rich Low_complexity Low_complexity 1 42 0 269 266 87 29 chr12 73903538 73903711 -70378778 - L1MC4a LINE L1 -1899 5909 5727 25 31 0 0 chr12 73903891 73903923 -70378566 + AT_rich Low_complexity Low_complexity 1 32 0 1561 142 21 105 chr12 73903923 73904248 -70378241 + AluJb SINE Alu 1 298 -14 1145 108 0 0 chr12 73904295 73904443 -70378046 + AluSp SINE Alu 152 299 -14 320 255 103 40 chr12 73904469 73904695 -70377794 - L1MC4a LINE L1 -597 5565 5317 1937 128 6 48 chr12 73905650 73905962 -70376527 - AluSx SINE Alu -13 299 1 581 309 47 51 chr12 73906820 73907076 -70375413 + MIR SINE MIR 6 260 -2 1347 146 12 37 chr12 73907334 73907517 -70374972 - Tigger2 DNA MER2_type 0 2718 2541 1466 191 17 0 chr12 73907517 73907752 -70374737 + MER8 DNA MER2_type 1 239 0 1347 146 12 37 chr12 73907752 73907814 -70374675 - Tigger2 DNA MER2_type -177 2541 2479 1711 152 13 23 chr12 73907814 73908117 -70374372 + AluJo SINE Alu 1 300 -12 769 143 18 0 chr12 73908123 73908235 -70374254 + AluJo/FLAM SINE Alu 1 114 -188 1938 110 45 10 chr12 73908235 73908525 -70373964 - AluSg SINE Alu -10 300 1 731 87 0 48 chr12 73908708 73908812 -70373677 - AluSg/x SINE Alu -16 294 196 348 141 16 148 chr12 73908819 73908881 -70373608 - Tigger2 DNA MER2_type -2607 111 73 1380 190 3 87 chr12 73908881 73909128 -70373361 - AluJo SINE Alu -18 294 79 1840 124 27 24 chr12 73909128 73909426 -70373063 - AluSx SINE Alu -9 303 5 1380 190 3 87 chr12 73909426 73909499 -70372990 - AluJo SINE Alu -233 79 1 348 141 16 148 chr12 73909499 73909564 -70372925 - Tigger2 DNA MER2_type -2645 73 1 1853 159 7 16 chr12 73909595 73909903 -70372586 + AluJb SINE Alu 1 305 -7 22 70 0 0 chr12 73910377 73910420 -70372069 + AT_rich Low_complexity Low_complexity 1 43 0 1821 154 10 13 chr12 73911043 73911348 -70371141 - AluJb SINE Alu -7 305 2 1395 156 0 13 chr12 73911669 73911894 -70370595 - AluJo SINE Alu -88 224 3 1572 163 3 69 chr12 73912751 73913070 -70369419 + AluJo SINE Alu 1 298 -14 458 253 34 56 chr12 73914441 73914619 -70367870 - MER5B DNA MER1_type -1 177 4 1648 175 7 10 chr12 73915173 73915465 -70367024 - AluJo SINE Alu -6 306 16 1019 292 85 66 chr12 73915736 73916432 -70366057 + L2 LINE L2 2550 3311 -2 2612 38 0 0 chr12 73916560 73916853 -70365636 + AluY SINE Alu 5 297 -14 1753 123 3 85 chr12 73917764 73918080 -70364409 + AluJo SINE Alu 23 312 0 25 31 0 0 chr12 73918321 73918353 -70364136 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 73919646 73919676 -70362813 + AT_rich Low_complexity Low_complexity 1 30 0 28 61 0 0 chr12 73919823 73919872 -70362617 + AT_rich Low_complexity Low_complexity 1 49 0 413 214 16 56 chr12 73919906 73920032 -70362457 - FRAM SINE Alu -16 160 40 189 0 0 0 chr12 73920660 73920681 -70361808 + (GA)n Simple_repeat Simple_repeat 1 21 0 527 173 105 8 chr12 73920701 73920834 -70361655 + L1MA5A LINE L1 6146 6291 -6 1999 126 13 16 chr12 73922123 73922432 -70360057 - AluSx SINE Alu -4 308 1 1264 178 26 132 chr12 73923128 73923335 -70359154 - AluYb8 SINE Alu -2 306 148 2136 89 11 14 chr12 73923335 73923617 -70358872 - AluSg SINE Alu -29 281 1 1264 178 26 132 chr12 73923617 73923751 -70358738 - AluYb8 SINE Alu -160 148 1 188 270 0 32 chr12 73924194 73924257 -70358232 + MIR SINE MIR 190 250 -12 604 149 0 0 chr12 73924348 73924435 -70358054 - AluJ/FRAM SINE Alu -10 302 216 292 182 0 18 chr12 73924435 73924490 -70357999 - AluSp SINE Alu -126 177 124 338 149 46 0 chr12 73924490 73924577 -70357912 + (TA)n Simple_repeat Simple_repeat 2 92 0 812 156 0 47 chr12 73924578 73924706 -70357783 - FLAM_C SINE Alu -19 124 3 2608 46 0 0 chr12 73924813 73925117 -70357372 - AluY SINE Alu -7 304 1 1417 169 146 8 chr12 73925247 73925507 -70356982 + AluJo SINE Alu 1 296 -6 1795 131 64 3 chr12 73925547 73925830 -70356659 - AluSx SINE Alu -12 300 1 2237 101 0 14 chr12 73926078 73926375 -70356114 - AluSg SINE Alu -17 293 1 2215 128 0 0 chr12 73926458 73926756 -70355733 - AluSx SINE Alu -14 298 1 5037 155 62 19 chr12 73926945 73927915 -70354574 + LTR49-int LTR ERV1 4608 5619 -712 492 206 6 77 chr12 73927918 73928088 -70354401 + AluJo SINE Alu 3 160 -152 1907 159 0 3 chr12 73928763 73929071 -70353418 - AluJb SINE Alu -1 311 5 2109 114 10 3 chr12 73929992 73930290 -70352199 - AluSx SINE Alu -12 300 1 2050 115 24 7 chr12 73930520 73930815 -70351674 + AluSx SINE Alu 1 300 -12 2262 97 0 10 chr12 73931255 73931553 -70350936 + AluSx SINE Alu 1 295 -17 763 254 124 21 chr12 73931558 73931709 -70350780 + HAL1b LINE L1 840 974 -374 2280 111 10 0 chr12 73931709 73932015 -70350474 + AluSq SINE Alu 1 309 -4 763 254 124 21 chr12 73932015 73932281 -70350208 + HAL1b LINE L1 974 1300 -48 335 121 17 0 chr12 73933047 73933105 -70349384 + (TG)n Simple_repeat Simple_repeat 2 60 0 180 0 0 0 chr12 73933105 73933125 -70349364 + (GA)n Simple_repeat Simple_repeat 1 20 0 213 275 83 58 chr12 73933425 73933545 -70348944 + L2 LINE L2 3186 3308 -5 3630 138 80 56 chr12 73934305 73934980 -70347509 + LTR8 LTR ERV1 1 691 0 1746 187 0 0 chr12 73935091 73935385 -70347104 + AluJo SINE Alu 1 294 -18 208 318 0 15 chr12 73935435 73935501 -70346988 + MIR SINE MIR 5 69 -193 1840 184 0 3 chr12 73935557 73935850 -70346639 - AluJb SINE Alu -20 292 1 448 256 86 54 chr12 73937390 73937673 -70344816 + L1MC4 LINE L1 7325 7728 -314 2357 95 7 3 chr12 73937899 73938203 -70344286 - AluSx SINE Alu -7 305 1 243 179 0 15 chr12 73938215 73938282 -70344207 - L1PA15 LINE L1 0 6165 6100 4705 134 42 3 chr12 73938287 73939031 -70343458 - L1PA15 LINE L1 -25 6140 5368 207 69 0 0 chr12 73939191 73939220 -70343269 + (CA)n Simple_repeat Simple_repeat 2 30 0 2039 109 0 53 chr12 73939994 73940316 -70342173 + AluSq SINE Alu 1 305 -8 2174 124 0 3 chr12 73941129 73941428 -70341061 - AluSx SINE Alu -14 298 1 2428 50 0 0 chr12 73942534 73942840 -70339649 + AluY SINE Alu 1 306 0 292 303 37 86 chr12 73943044 73943290 -70339199 - MIR SINE MIR -15 247 16 202 273 139 24 chr12 73943777 73943942 -70338547 - L2 LINE L2 0 3313 3130 189 0 0 0 chr12 73944802 73944823 -70337666 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 366 319 99 7 chr12 73945201 73945342 -70337147 + MER5A DNA MER1_type 36 189 0 361 293 8 8 chr12 73945403 73945536 -70336953 - L1ME4a LINE L1 -240 5881 5749 1755 152 10 37 chr12 73945730 73945910 -70336579 + AluJo SINE Alu 1 171 -141 2834 88 30 42 chr12 73945910 73946310 -70336179 + MER48 LTR ERV1 4 398 0 1755 152 10 37 chr12 73946310 73946425 -70336064 + AluJo SINE Alu 171 288 -24 25 0 0 0 chr12 73946540 73946565 -70335924 + AT_rich Low_complexity Low_complexity 1 25 0 391 200 371 29 chr12 73946572 73946747 -70335742 - MIR SINE MIR -8 254 20 334 249 222 32 chr12 73947655 73947769 -70334720 - MIR SINE MIR -41 221 130 942 196 0 73 chr12 73947769 73947907 -70334582 + MER5A DNA MER1_type 1 121 -68 1973 134 0 35 chr12 73947907 73948221 -70334268 - AluSx SINE Alu -9 303 1 942 196 0 73 chr12 73948221 73948286 -70334203 + MER5A DNA MER1_type 121 189 0 334 249 222 32 chr12 73948286 73948356 -70334133 - MIR SINE MIR -132 130 2 2049 98 61 10 chr12 73948762 73949058 -70333431 + AluSp SINE Alu 1 311 -2 2185 57 0 4 chr12 73949067 73949329 -70333160 + L1PA8 LINE L1 5909 6169 -3 367 268 63 68 chr12 73950316 73950521 -70331968 + L2 LINE L2 3099 3302 -11 2213 107 20 0 chr12 73950937 73951235 -70331254 + AluSx SINE Alu 1 304 -8 1130 254 38 29 chr12 73951394 73951709 -70330780 + MLT1I LTR MaLR 76 393 -16 648 101 0 0 chr12 73951883 73951962 -70330527 + AluS SINE Alu 2 80 -232 284 146 0 0 chr12 73951962 73952003 -70330486 + AluJb SINE Alu 115 155 -147 334 310 106 84 chr12 73952244 73952660 -70329829 + L2 LINE L2 2848 3272 0 1934 102 0 4 chr12 73953682 73953938 -70328551 + AluSg SINE Alu 45 299 -11 1546 174 14 39 chr12 73954054 73954336 -70328153 - AluJb SINE Alu -37 275 1 757 280 40 13 chr12 73954886 73955111 -70327378 + MIR SINE MIR 10 240 -22 480 285 47 14 chr12 73956028 73956242 -70326247 + L1MC4 LINE L1 7822 8042 0 5070 132 30 13 chr12 73956251 73957151 -70325338 + L1MC1 LINE L1 5185 6101 -232 845 119 0 45 chr12 73957153 73957287 -70325202 + L1MC1 LINE L1 6164 6291 -42 307 222 14 28 chr12 73958037 73958109 -70324380 + L1MC4a LINE L1 6023 6093 -1715 338 136 23 80 chr12 73958847 73958935 -70323554 - MIR SINE MIR -71 191 109 21 0 0 0 chr12 73959822 73959843 -70322646 + AT_rich Low_complexity Low_complexity 1 21 0 393 171 0 0 chr12 73959971 73960059 -70322430 + CT-rich Low_complexity Low_complexity 3 90 0 234 0 0 0 chr12 73960062 73960088 -70322401 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1542 180 29 4 chr12 73960089 73960361 -70322128 - AluJo SINE Alu -32 280 2 2143 112 0 14 chr12 73961098 73961392 -70321097 - AluSq SINE Alu -23 290 1 1896 184 0 0 chr12 73961453 73961763 -70320726 - AluJo SINE Alu -2 310 1 876 182 91 0 chr12 73961851 73962027 -70320462 - LTR47A LTR ERVL 0 452 261 366 304 76 32 chr12 73962391 73962549 -70319940 + MER5A DNA MER1_type 6 170 -19 1913 121 46 7 chr12 73962673 73962954 -70319535 - AluSx SINE Alu -13 299 8 233 262 33 0 chr12 73963041 73963102 -70319387 - L1ME LINE L1 -314 5856 5794 666 204 64 6 chr12 73963495 73963652 -70318837 + MIR SINE MIR 27 192 -70 2084 111 14 0 chr12 73964002 73964307 -70318182 - AluSx SINE Alu 0 309 1 522 269 88 69 chr12 73964770 73965065 -70317424 + L1MC4a LINE L1 4948 5251 -895 1075 232 66 37 chr12 73965261 73965533 -70316956 - AluJo SINE Alu -30 282 3 3704 108 87 2 chr12 73965536 73966161 -70316328 + L1PA7 LINE L1 5414 6134 -20 180 0 0 0 chr12 73966164 73966184 -70316305 + (TAA)n Simple_repeat Simple_repeat 3 22 0 279 79 0 0 chr12 73966184 73966222 -70316267 + (GAA)n Simple_repeat Simple_repeat 1 38 0 389 305 54 5 chr12 73966315 73966519 -70315970 + L1MC4a LINE L1 5684 5801 -363 410 299 28 7 chr12 73966596 73966740 -70315749 - L1MC4a LINE L1 -1926 5882 5736 376 186 0 0 chr12 73966745 73966815 -70315674 - L1MB8 LINE L1 -6 6172 6103 358 181 48 0 chr12 73966828 73966911 -70315578 - L1MB3 LINE L1 0 6183 6097 271 210 48 0 chr12 73967407 73967469 -70315020 + MIR SINE MIR 86 150 -58 592 258 69 37 chr12 73967551 73967768 -70314721 + MIR SINE MIR 33 256 -6 903 217 59 14 chr12 73967866 73968087 -70314402 - MIR SINE MIR -21 241 11 452 100 17 0 chr12 73968103 73968163 -70314326 + U7 snRNA snRNA 2 62 -1 2130 103 11 0 chr12 73968202 73968483 -70314006 - AluSq SINE Alu -26 287 4 276 268 24 0 chr12 73970503 73970585 -70311904 + MIR SINE MIR 164 247 -15 681 251 121 14 chr12 73970983 73971190 -70311299 + MIR SINE MIR 20 248 -14 326 240 110 10 chr12 73971857 73971957 -70310532 + L2 LINE L2 3204 3313 0 313 281 78 42 chr12 73971977 73972169 -70310320 + MIR SINE MIR 49 247 -15 2333 90 3 3 chr12 73972790 73973089 -70309400 + AluSg SINE Alu 1 299 -11 467 284 330 6 chr12 73973251 73973596 -70308893 + L2 LINE L2 2815 3271 -1 539 306 49 52 chr12 73973972 73974296 -70308193 + MER68 LTR ERV1 240 562 0 2023 291 98 21 chr12 73974300 73974776 -70307713 + L2 LINE L2 1991 2429 -884 516 72 0 0 chr12 73974776 73974845 -70307644 + (CAATC)n Simple_repeat Simple_repeat 4 72 0 2023 291 98 21 chr12 73974845 73975391 -70307098 + L2 LINE L2 2429 3083 -230 243 368 59 0 chr12 73975406 73975474 -70307015 - L2 LINE L2 -50 3263 3192 380 220 149 14 chr12 73975510 73975651 -70306838 + L2 LINE L2 3118 3277 -36 2169 155 76 15 chr12 73976075 73976468 -70306021 + MSTB LTR MaLR 10 426 0 1906 147 6 34 chr12 73976864 73977184 -70305305 - AluSx SINE Alu -1 311 1 1768 139 13 33 chr12 73977320 73977623 -70304866 - AluSx SINE Alu -15 297 1 220 271 35 14 chr12 73977977 73978121 -70304368 + (TA)n Simple_repeat Simple_repeat 1 147 0 236 345 36 12 chr12 73978273 73978357 -70304132 - L2 LINE L2 -173 3099 3014 1045 158 0 0 chr12 73979088 73979253 -70303236 - FAM SINE Alu 0 49 1 486 0 0 0 chr12 73979342 73979396 -70303093 + (TG)n Simple_repeat Simple_repeat 2 55 0 766 238 96 26 chr12 73979676 73980210 -70302279 - MER20B DNA MER1_type 0 783 182 839 130 0 29 chr12 73980214 73980352 -70302137 + FLAM_C SINE Alu 5 138 -5 1909 117 55 0 chr12 73980401 73980675 -70301814 + AluSg SINE Alu 5 293 -17 310 239 101 9 chr12 73981377 73981486 -70301003 + L1ME4a LINE L1 5545 5663 -458 219 209 0 0 chr12 73981491 73981534 -70300955 - MIR SINE MIR -9 253 211 275 315 14 0 chr12 73981537 73981610 -70300879 - MIR SINE MIR -167 95 22 344 288 47 19 chr12 73981629 73981847 -70300642 + L1ME4a LINE L1 5687 5915 -206 287 158 168 30 chr12 73981862 73981963 -70300526 + L1ME4a LINE L1 6006 6120 -1 1256 143 106 43 chr12 73981990 73982083 -70300406 - MER33 DNA MER1_type -2261 324 238 1769 177 0 25 chr12 73982083 73982400 -70300089 - AluJb SINE Alu -3 309 1 1256 143 106 43 chr12 73982400 73982607 -70299882 - MER33 DNA MER1_type -2347 238 5 8243 20 2 2 chr12 73982747 73983898 -70298591 - L1PA3 LINE L1 -3 6152 5003 5852 33 0 1 chr12 73983898 73984580 -70297909 + L1PA3 LINE L1 4337 5017 -1129 463 201 112 63 chr12 73984597 73984795 -70297694 + MIR SINE MIR 15 219 -43 1515 147 147 26 chr12 73984925 73985190 -70297299 - AluJb SINE Alu -5 297 1 23 0 0 0 chr12 73985314 73985337 -70297152 + AT_rich Low_complexity Low_complexity 1 23 0 206 333 0 0 chr12 73985487 73985553 -70296936 - L2 LINE L2 -1 3312 3247 180 0 0 0 chr12 73986221 73986241 -70296248 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2016 146 0 3 chr12 73986261 73986563 -70295926 - AluSq SINE Alu -12 301 1 25 0 0 0 chr12 73987122 73987147 -70295342 + AT_rich Low_complexity Low_complexity 1 25 0 2335 93 3 10 chr12 73987645 73987957 -70294532 + AluSg SINE Alu 1 310 0 260 340 20 10 chr12 73988016 73988116 -70294373 + MIR SINE MIR 49 149 -113 300 287 147 79 chr12 73989117 73989396 -70293093 + L1MDb LINE L1 405 702 -5707 27 0 0 0 chr12 73989396 73989423 -70293066 + GC_rich Low_complexity Low_complexity 1 27 0 230 190 0 17 chr12 73990275 73990333 -70292156 + CT-rich Low_complexity Low_complexity 5 61 0 271 283 67 17 chr12 73990441 73990561 -70291928 + MER5B DNA MER1_type 49 174 -4 1039 41 0 0 chr12 73990687 73990810 -70291679 - L1PA5 LINE L1 -258 5896 5774 362 38 0 38 chr12 73990810 73990856 -70291633 + L1PA6 LINE L1 6104 6154 0 273 238 209 9 chr12 73990876 73990981 -70291508 + MIR SINE MIR 49 174 -88 2218 106 10 6 chr12 73991080 73991392 -70291097 - AluSq SINE Alu 0 313 1 1475 160 3 119 chr12 73991395 73991773 -70290716 - AluSp SINE Alu 0 313 1 545 247 175 0 chr12 73992298 73992452 -70290037 + MER5A DNA MER1_type 9 189 0 2279 116 0 0 chr12 73992561 73992864 -70289625 - AluSx SINE Alu -7 305 3 645 300 111 37 chr12 73993054 73993487 -70289002 + L1ME4a LINE L1 5317 5717 -404 1290 161 23 18 chr12 73993487 73993705 -70288784 + MER20 DNA MER1_type 1 219 0 645 300 111 37 chr12 73993705 73994021 -70288468 + L1ME4a LINE L1 5717 6121 0 281 394 17 0 chr12 73994122 73994297 -70288192 - L2 LINE L2 -2524 790 613 887 136 23 0 chr12 73994461 73994593 -70287896 + FRAM SINE Alu 24 158 -18 434 328 59 0 chr12 73994639 73994825 -70287664 - L1ME LINE L1 -351 5770 5574 549 179 39 39 chr12 73994839 73994995 -70287494 - LTR37B LTR ERV1 0 468 313 303 259 59 0 chr12 73995014 73995099 -70287390 - L1MC4 LINE L1 -1339 6703 6614 396 199 15 7 chr12 73995100 73995236 -70287253 + (TA)n Simple_repeat Simple_repeat 2 138 0 233 280 0 32 chr12 73995236 73995329 -70287160 - L1MC4 LINE L1 -1337 6705 6616 187 152 43 0 chr12 73995337 73995383 -70287106 + (TA)n Simple_repeat Simple_repeat 2 49 0 479 163 16 38 chr12 73995403 73995587 -70286902 + (TA)n Simple_repeat Simple_repeat 1 180 0 368 188 10 79 chr12 73995587 73995688 -70286801 - LTR37B LTR ERV1 -161 307 214 403 263 112 53 chr12 73995929 73996214 -70286275 - L1ME LINE L1 -557 5564 5263 237 173 37 37 chr12 73996221 73996302 -70286187 + T-rich Low_complexity Low_complexity 2 82 0 2002 108 99 21 chr12 73996311 73996644 -70285845 - L1MC2 LINE L1 0 6344 5986 1524 155 53 21 chr12 73997006 73997290 -70285199 - L1MB2 LINE L1 -1 6170 5878 306 0 0 0 chr12 73997353 73997387 -70285102 + (TG)n Simple_repeat Simple_repeat 2 35 0 1658 135 0 12 chr12 73997546 73997816 -70284673 - AluJb SINE Alu 0 310 44 482 211 32 41 chr12 73998730 73998853 -70283636 - L2 LINE L2 0 3313 3192 715 260 27 81 chr12 73999298 73999556 -70282933 + MIR SINE MIR 6 249 -13 306 324 84 35 chr12 74000369 74000511 -70281978 - L2 LINE L2 0 3313 3165 1622 203 14 0 chr12 74000592 74000882 -70281607 - AluJo SINE Alu -18 294 1 2196 181 87 94 chr12 74000914 74001594 -70280895 - LTR8A LTR ERV1 -52 675 1 1002 280 37 7 chr12 74001596 74001867 -70280622 - HUERS-P1 LTR ERV1 -1 6262 5984 183 80 0 0 chr12 74002003 74002028 -70280461 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 2051 126 0 23 chr12 74002034 74002343 -70280146 - AluJo SINE Alu -10 302 1 5220 149 62 14 chr12 74002343 74003309 -70279180 - HUERS-P1 LTR ERV1 -712 5619 4608 2110 139 0 3 chr12 74003498 74003801 -70278688 + AluSx SINE Alu 1 302 -10 1880 101 58 25 chr12 74003803 74004110 -70278379 + AluSx SINE Alu 1 316 0 335 150 17 0 chr12 74004338 74004398 -70278091 - Alu SINE Alu 0 300 240 1088 133 0 7 chr12 74004411 74004562 -70277927 - AluSq/x SINE Alu -163 150 1 1278 253 113 56 chr12 74004775 74005126 -70277363 - L1M4 LINE L1 -1394 4752 4423 2491 63 0 10 chr12 74005126 74005429 -70277060 - AluY SINE Alu -11 300 1 1278 253 113 56 chr12 74005429 74005536 -70276953 - L1M4 LINE L1 -1723 4423 4324 2057 114 0 10 chr12 74005536 74005826 -70276663 - AluSg SINE Alu -3 307 21 1278 253 113 56 chr12 74005826 74006275 -70276214 - L1M4 LINE L1 -1822 4324 3792 2101 118 10 3 chr12 74006534 74006831 -70275658 - AluSq SINE Alu -14 299 1 2240 203 174 98 chr12 74007510 74008063 -70274426 - MLT1E2 LTR MaLR -5 621 55 5953 57 6 0 chr12 74008192 74008897 -70273592 + L1PA3 LINE L1 5446 6154 -1 737 174 23 23 chr12 74008897 74009069 -70273420 - MER63 DNA MER1_type -888 173 2 396 230 81 108 chr12 74009069 74009273 -70273216 + MER112 DNA MER1_type 63 260 0 1459 158 42 15 chr12 74009705 74009970 -70272519 - LTR53 LTR ERVL -229 290 19 266 178 0 0 chr12 74009970 74010015 -70272474 - LTR53 LTR ERVL -474 45 1 206 288 113 50 chr12 74010015 74010095 -70272394 - L2 LINE L2 -37 3235 3151 415 277 109 7 chr12 74010311 74010448 -70272041 - MER5A DNA MER1_type -3 186 36 8036 29 1 1 chr12 74011002 74011979 -70270510 - L1P LINE L1 -730 5425 4449 308 200 0 0 chr12 74011984 74012034 -70270455 + MER63C DNA MER1_type 197 246 -684 346 214 69 48 chr12 74012080 74012225 -70270264 - MER63C DNA MER1_type -539 391 244 * 1183 234 67 16 chr12 74012111 74012427 -70270062 + MER63C DNA MER1_type 244 575 -355 3454 120 71 2 chr12 74012860 74013392 -70269097 - MER4B LTR ERV1 -41 569 1 1679 83 12 12 chr12 74013392 74013628 -70268861 - MER39B LTR ERV1 -415 238 3 596 162 0 0 chr12 74013628 74013727 -70268762 + L1MB2 LINE L1 6066 6164 -7 2515 63 0 0 chr12 74013729 74014029 -70268460 - AluY SINE Alu -11 300 1 22 35 0 0 chr12 74014085 74014114 -70268375 + AT_rich Low_complexity Low_complexity 1 29 0 957 114 0 0 chr12 74014185 74014316 -70268173 - AluSq/x SINE Alu -181 131 1 775 210 8 0 chr12 74014358 74014482 -70268007 + FLAM_A SINE Alu 1 125 -8 1844 139 24 11 chr12 74014502 74014789 -70267700 + AluJb SINE Alu 1 291 -21 829 235 11 28 chr12 74015152 74015331 -70267158 + MER45A DNA AcHobo 1 176 -2 181 305 73 37 chr12 74016172 74016254 -70266235 + L2 LINE L2 3168 3252 -20 1224 186 50 8 chr12 74016580 74016822 -70265667 + LTR53 LTR ERVL 268 519 0 219 175 0 0 chr12 74016824 74016864 -70265625 + L2 LINE L2 3233 3272 0 318 328 17 9 chr12 74016971 74017087 -70265402 - MIR3 SINE MIR -5 203 87 189 281 135 22 chr12 74017079 74017168 -70265321 + L2 LINE L2 3214 3312 -1 * 1774 159 3 51 chr12 74017267 74017582 -70264907 + AluJo SINE Alu 1 300 -12 997 215 50 5 chr12 74017702 74017902 -70264587 - MER3 DNA MER1_type 0 209 1 254 288 34 0 chr12 74018046 74018105 -70264384 + L2 LINE L2 3248 3308 -5 821 300 66 0 chr12 74018295 74018612 -70263877 - L1ME LINE L1 -376 5786 5449 6299 87 35 5 chr12 74018994 74019901 -70262588 + L1PB2 LINE L1 5217 6149 -2 186 250 0 0 chr12 74020999 74021047 -70261442 + MIR SINE MIR 98 145 -117 914 287 159 27 chr12 74021073 74021481 -70261008 - L2 LINE L2 0 3313 2852 603 224 42 14 chr12 74021575 74021718 -70260771 - L1MA9 LINE L1 -42 6270 6124 * 800 226 62 26 chr12 74021708 74021934 -70260555 + L1MA9 LINE L1 5914 6147 -165 3020 132 39 18 chr12 74022748 74023129 -70259360 + L1MA9 LINE L1 5788 6184 -128 2687 144 16 43 chr12 74023129 74023523 -70258966 - MSTB LTR MaLR 0 426 43 1964 140 7 0 chr12 74023523 74023826 -70258663 + AluSx SINE Alu 1 305 0 2687 144 16 43 chr12 74023826 74023868 -70258621 - MSTB LTR MaLR -383 43 1 3020 132 39 18 chr12 74023868 74023995 -70258494 + L1MA9 LINE L1 6184 6307 -5 309 262 142 14 chr12 74024073 74024214 -70258275 - L2 LINE L2 -1937 1377 1219 2309 99 0 0 chr12 74024367 74024660 -70257829 + AluSp SINE Alu 9 301 -12 298 167 0 0 chr12 74024812 74024860 -70257629 + MER112 DNA MER1_type 17 64 -196 484 230 30 0 chr12 74024864 74024964 -70257525 - MER63 DNA MER1_type 0 1061 959 1020 119 0 0 chr12 74024965 74025099 -70257390 + AluJo SINE Alu 1 134 -178 1096 146 31 176 chr12 74025103 74025266 -70257223 - MER63 DNA MER1_type -99 961 776 2019 143 0 0 chr12 74025266 74025552 -70256937 + AluSx SINE Alu 1 286 -26 1096 146 31 176 chr12 74025552 74025687 -70256802 - MER63 DNA MER1_type -284 776 721 2397 100 3 0 chr12 74025687 74025998 -70256491 + AluSx SINE Alu 1 312 0 1096 146 31 176 chr12 74025998 74026055 -70256434 - MER63 DNA MER1_type -339 721 657 2275 91 10 3 chr12 74026446 74026755 -70255734 + THE1B-int LTR MaLR 1270 1580 0 2474 93 51 28 chr12 74026757 74027110 -70255379 + THE1B LTR MaLR 3 363 -1 711 102 0 0 chr12 74027111 74027209 -70255280 + MER57A-int LTR ERV1 7440 7537 0 2669 136 13 0 chr12 74027209 74027607 -70254882 + MER57A LTR ERV1 1 403 0 5056 90 39 15 chr12 74028251 74028926 -70253563 + LTR8 LTR ERV1 1 691 0 648 199 127 11 chr12 74029016 74029174 -70253315 - MER5A DNA MER1_type -6 183 4 307 276 114 0 chr12 74029735 74029907 -70252582 - MIR SINE MIR -55 207 19 238 277 36 66 chr12 74029960 74030097 -70252392 - MER117 DNA MER1_type -57 140 8 2156 181 128 88 chr12 74030327 74030952 -70251537 + MLT1E1 LTR MaLR 1 650 -4 2163 112 3 0 chr12 74031043 74031328 -70251161 + AluSx SINE Alu 1 286 -26 277 289 101 54 chr12 74031745 74031894 -70250595 - L2 LINE L2 0 3313 3158 437 281 30 18 chr12 74032049 74032216 -70250273 - MER104 DNA Tc2 -2 178 10 1749 171 3 13 chr12 74032575 74032885 -70249604 + AluJo SINE Alu 1 307 -5 841 152 133 0 chr12 74032920 74033071 -70249418 + MLT1C LTR MaLR 6 176 -291 2108 98 7 0 chr12 74033309 74033622 -70248867 - AluSx SINE Alu 0 319 5 334 239 15 0 chr12 74033734 74033801 -70248688 - MER63 DNA MER1_type -18 1044 977 808 191 38 19 chr12 74033874 74034204 -70248285 - MER63 DNA MER1_type -619 442 13 268 281 211 9 chr12 74034207 74034435 -70248054 - L2 LINE L2 -119 3194 2921 3639 96 55 74 chr12 74034819 74035437 -70247052 + MER4B LTR ERV1 1 606 -4 270 0 0 0 chr12 74036908 74036938 -70245551 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1065 230 120 41 chr12 74037314 74037605 -70244884 + MER119 DNA MER1_type 1 314 -269 1527 193 30 17 chr12 74037614 74037909 -70244580 + AluJo SINE Alu 1 299 -13 412 143 0 22 chr12 74037919 74038010 -70244479 + (GAA)n Simple_repeat Simple_repeat 3 91 0 2174 167 18 36 chr12 74038038 74038481 -70244008 + LTR56 LTR ERV1 11 445 0 1094 196 59 20 chr12 74038495 74038750 -70243739 + MER119 DNA MER1_type 304 568 -15 512 298 21 0 chr12 74038997 74039138 -70243351 - MER117 DNA MER1_type -53 144 1 3836 196 106 29 chr12 74039852 74040648 -70241841 - MER21B LTR ERV1 -6 857 1 220 355 36 27 chr12 74040705 74040815 -70241674 + L3 LINE CR1 999 1109 -468 974 144 173 27 chr12 74040822 74041158 -70241331 + MER31B LTR ERV1 1 429 -37 771 187 148 27 chr12 74041158 74041409 -70241080 + MER39 LTR ERV1 1 467 -240 1022 201 148 3 chr12 74041409 74041692 -70240797 - LTR54B LTR ERV1 -2 496 173 402 77 0 0 chr12 74041690 74041742 -70240747 - LTR54B LTR ERV1 -446 52 1 * 2720 152 29 2 chr12 74041745 74042160 -70240329 + MSTB LTR MaLR 1 426 0 1013 169 41 30 chr12 74042161 74042388 -70240101 + MER39 LTR ERV1 419 707 0 285 73 0 0 chr12 74042388 74042429 -70240060 + MER31B LTR ERV1 426 466 0 1382 218 28 50 chr12 74042587 74042950 -70239539 + MER4D LTR ERV1 549 903 0 812 138 0 0 chr12 74042957 74043073 -70239416 + Tigger3(Golem) DNA MER2_type 2922 3037 0 210 274 0 20 chr12 74044744 74044795 -70237694 - L2 LINE L2 -23 3249 3200 213 39 0 0 chr12 74045132 74045158 -70237331 + (CA)n Simple_repeat Simple_repeat 2 27 0 1919 166 0 3 chr12 74045275 74045588 -70236901 + AluJo SINE Alu 1 312 0 963 217 22 0 chr12 74046025 74046205 -70236284 - MER5A DNA MER1_type 0 189 6 2437 96 0 6 chr12 74046593 74046905 -70235584 - AluSx SINE Alu -2 310 1 303 345 62 0 chr12 74047305 74047450 -70235039 + L3 LINE CR1 1287 1440 -137 29 0 0 0 chr12 74047460 74047489 -70235000 + AT_rich Low_complexity Low_complexity 1 29 0 1154 194 129 29 chr12 74047502 74047812 -70234677 - LTR37A LTR ERV1 -4 422 82 785 237 64 75 chr12 74047897 74048406 -70234083 - MER31-int LTR ERV1 -664 4272 3708 1259 144 90 59 chr12 74048411 74048677 -70233812 - MLT1D LTR MaLR -2 503 248 917 178 142 71 chr12 74048890 74049171 -70233318 + AluJo SINE Alu 2 302 0 33 25 0 0 chr12 74049174 74049214 -70233275 + AT_rich Low_complexity Low_complexity 1 40 0 860 193 99 0 chr12 74049784 74049945 -70232544 + AluSg/x SINE Alu 125 301 -11 25 51 0 0 chr12 74050121 74050160 -70232329 + AT_rich Low_complexity Low_complexity 1 39 0 1609 124 54 4 chr12 74050160 74050418 -70232071 - AluSx SINE Alu -24 288 18 1137 174 32 0 chr12 74050426 74050644 -70231845 - LTR37A LTR ERV1 -3 423 199 196 256 8 145 chr12 74050680 74050752 -70231737 + MIR SINE MIR 7 59 -203 1128 167 6 0 chr12 74050752 74050926 -70231563 - FAM SINE Alu 0 175 1 196 256 8 145 chr12 74050926 74050970 -70231519 + MIR SINE MIR 59 107 -155 1755 208 21 6 chr12 74050971 74051307 -70231182 + MER58B DNA MER1_type 1 341 0 349 276 28 90 chr12 74051353 74051410 -70231079 + MIR SINE MIR 106 165 -97 2082 132 3 0 chr12 74051410 74051706 -70230783 + AluSx SINE Alu 5 301 -11 349 276 28 90 chr12 74051706 74051793 -70230696 + MIR SINE MIR 165 241 -21 686 200 53 136 chr12 74051961 74052037 -70230452 - MIR SINE MIR -1 261 180 1811 160 14 0 chr12 74052037 74052318 -70230171 - AluJo SINE Alu -27 285 1 686 200 53 136 chr12 74052318 74052506 -70229983 - MIR SINE MIR -82 180 19 207 0 0 0 chr12 74052633 74052656 -70229833 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 433 202 32 11 chr12 74054369 74054463 -70228026 - LTR67 LTR ERVL 0 557 462 4780 163 22 34 chr12 74054523 74054994 -70227495 + L1MB4 LINE L1 5186 5661 -519 2158 121 139 16 chr12 74054994 74055375 -70227114 + MSTA LTR MaLR 1 428 0 4780 163 22 34 chr12 74055375 74055890 -70226599 + L1MB4 LINE L1 5661 6162 -18 377 219 52 31 chr12 74055890 74055986 -70226503 - MER58 DNA MER1_type -2314 106 9 201 321 43 59 chr12 74056271 74056458 -70226031 + L2 LINE L2 1606 1789 -1525 260 228 0 0 chr12 74056872 74056929 -70225560 - L2 LINE L2 -17 3255 3199 770 249 81 0 chr12 74057030 74057251 -70225238 - MIR SINE MIR -16 246 8 288 77 0 0 chr12 74057313 74057352 -70225137 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1789 178 0 3 chr12 74057356 74057642 -70224847 - AluJo SINE Alu -27 285 1 743 276 92 0 chr12 74057672 74057922 -70224567 - MER115 DNA AcHobo 0 693 421 243 255 0 0 chr12 74058122 74058169 -70224320 - MER115 DNA AcHobo -544 149 103 411 224 70 39 chr12 74058189 74058288 -70224201 - MER5C DNA MER1_type 0 324 217 1508 171 77 14 chr12 74058288 74058574 -70223915 + AluJo SINE Alu 1 304 -8 411 224 70 39 chr12 74058574 74058630 -70223859 - MER5C DNA MER1_type -107 217 164 345 344 0 0 chr12 74059219 74059344 -70223145 - Charlie3 DNA MER1_type -1146 1564 1440 22 35 0 0 chr12 74060172 74060201 -70222288 + AT_rich Low_complexity Low_complexity 1 29 0 188 65 0 32 chr12 74060223 74060233 -70222256 + (TA)n Simple_repeat Simple_repeat 2 11 -20 2041 153 3 0 chr12 74060233 74060533 -70221956 - AluSx SINE Alu -11 301 1 188 65 0 32 chr12 74060533 74060553 -70221936 + (TA)n Simple_repeat Simple_repeat 11 31 0 45 83 0 0 chr12 74060569 74060677 -70221812 + AT_rich Low_complexity Low_complexity 1 108 0 534 223 25 0 chr12 74060859 74060980 -70221509 - MER5C DNA MER1_type -200 124 1 338 259 145 12 chr12 74061229 74061395 -70221094 - MIR SINE MIR -74 188 1 678 266 201 26 chr12 74062040 74062389 -70220100 + MLT1J2 LTR MaLR 1 410 -40 1529 134 0 5 chr12 74062463 74062686 -70219803 - AluSq SINE Alu -9 304 83 2349 102 0 19 chr12 74062984 74063298 -70219191 + AluSx SINE Alu 1 308 -4 36 23 0 0 chr12 74064180 74064223 -70218266 + AT_rich Low_complexity Low_complexity 1 43 0 288 135 52 135 chr12 74064639 74064689 -70217800 + L1MB4 LINE L1 6093 6133 -47 2186 107 13 0 chr12 74064689 74064988 -70217501 + AluSx SINE Alu 1 303 -9 288 135 52 135 chr12 74064988 74065033 -70217456 + L1MB4 LINE L1 6133 6180 0 2324 89 7 10 chr12 74066278 74066580 -70215909 - AluSq SINE Alu -12 301 1 890 222 32 0 chr12 74067259 74067444 -70215045 + MER3 DNA MER1_type 1 191 -18 1125 180 4 35 chr12 74068009 74068237 -70214252 - AluJb SINE Alu -7 305 85 186 304 96 26 chr12 74069337 74069452 -70213037 + L2 LINE L2 3180 3302 -11 1926 157 0 7 chr12 74069470 74069763 -70212726 + AluJb SINE Alu 14 304 -8 447 277 15 7 chr12 74069884 74070021 -70212468 + MIR SINE MIR 104 241 -21 733 270 164 37 chr12 74070124 74070557 -70211932 - MLT1K LTR MaLR -78 510 23 2092 261 41 25 chr12 74070800 74071435 -70211054 + MLT2F LTR ERVL 10 654 -9 479 234 180 0 chr12 74071453 74071620 -70210869 + MIR SINE MIR 26 222 -40 232 322 73 96 chr12 74071660 74071974 -70210515 - L2 LINE L2 -56 3216 2910 705 197 171 0 chr12 74072813 74072965 -70209524 - MER45A DNA AcHobo 0 178 1 276 246 131 25 chr12 74073928 74074050 -70208439 - L2 LINE L2 0 3272 3138 1038 256 151 0 chr12 74074678 74075108 -70207381 + L2 LINE L2 1858 2352 -962 2021 180 0 11 chr12 74075263 74075613 -70206876 + MER52A LTR ERV1 1410 1755 0 4924 167 238 30 chr12 74075736 74076886 -70205603 - MER52A LTR ERV1 -366 1389 1 188 235 147 66 chr12 74076946 74077082 -70205407 - MIR SINE MIR -65 197 51 180 0 0 0 chr12 74078060 74078080 -70204409 + (TTA)n Simple_repeat Simple_repeat 3 22 0 5632 46 0 0 chr12 74078080 74078738 -70203751 - L1PA6 LINE L1 -18 6136 5479 809 277 150 28 chr12 74078783 74079632 -70202857 + L2 LINE L2 2366 3313 0 489 297 82 18 chr12 74079896 74080115 -70202374 - MIR SINE MIR -18 244 12 2292 102 0 0 chr12 74080185 74080479 -70202010 - AluSc SINE Alu -10 299 6 1213 117 46 30 chr12 74081142 74081339 -70201150 + AluSx SINE Alu 1 200 -112 569 238 48 21 chr12 74081420 74081535 -70200954 + L2 LINE L2 3107 3230 -83 1799 159 6 38 chr12 74081535 74081855 -70200634 - AluJo SINE Alu 0 312 3 569 238 48 21 chr12 74081855 74081928 -70200561 + L2 LINE L2 3230 3300 -13 304 235 74 0 chr12 74081933 74082014 -70200475 - L1MC4 LINE L1 -1340 6702 6616 306 322 0 0 chr12 74082129 74082219 -70200270 + L1MC4 LINE L1 6614 6703 -1339 696 239 101 22 chr12 74082227 74082286 -70200203 - L2 LINE L2 -27 3286 3233 1565 181 26 13 chr12 74082286 74082590 -70199899 + AluJo SINE Alu 3 310 -2 696 239 101 22 chr12 74082590 74082798 -70199691 - L2 LINE L2 -80 3233 2998 888 249 111 58 chr12 74083150 74083599 -70198890 - LTR33 LTR ERVL -8 513 41 2198 121 6 13 chr12 74084474 74084788 -70197701 - AluSx SINE Alu 0 312 1 342 279 39 19 chr12 74085085 74085189 -70197300 - L2 LINE L2 -5 3308 3203 26 30 0 0 chr12 74085293 74085326 -70197163 + AT_rich Low_complexity Low_complexity 1 33 0 1889 166 0 3 chr12 74086176 74086459 -70196030 - AluJo SINE Alu -30 282 1 1214 257 52 54 chr12 74087766 74088171 -70194318 - LTR33 LTR ERVL -117 404 1 2077 172 22 11 chr12 74088786 74089147 -70193342 - MLT1A1 LTR MaLR 0 365 1 999 208 94 0 chr12 74089161 74089363 -70193126 - MLT1G LTR MaLR -359 231 11 715 35 0 0 chr12 74089546 74089631 -70192858 - AluY SINE Alu -18 293 209 310 277 66 22 chr12 74090054 74090191 -70192298 - L2 LINE L2 -11 3302 3160 7463 183 7 2 chr12 74090205 74091747 -70190742 + L1PB1 LINE L1 3880 5429 -722 4638 113 18 15 chr12 74091847 74092569 -70189920 + L1PB1 LINE L1 5422 6146 0 2315 84 0 20 chr12 74092569 74092867 -70189622 - AluY SINE Alu -19 292 1 339 176 48 0 chr12 74094296 74094421 -70188068 + G-rich Low_complexity Low_complexity 2 132 0 2033 112 46 7 chr12 74094745 74095030 -70187459 + AluSx SINE Alu 1 296 -16 22 56 0 0 chr12 74095116 74095152 -70187337 + AT_rich Low_complexity Low_complexity 1 36 0 584 252 30 57 chr12 74096889 74097086 -70185403 - MIR SINE MIR 0 262 72 389 342 59 16 chr12 74097086 74097273 -70185216 + MER91A DNA MER1_type 2 196 0 584 252 30 57 chr12 74097273 74097337 -70185152 - MIR SINE MIR -190 72 8 253 347 29 29 chr12 74097651 74097821 -70184668 + MIR3 SINE MIR 4 173 -35 32 0 0 0 chr12 74098664 74098696 -70183793 + AT_rich Low_complexity Low_complexity 1 32 0 760 194 8 15 chr12 74098715 74098849 -70183640 + FLAM_A SINE Alu 1 133 0 510 250 76 8 chr12 74099454 74099586 -70182903 - MIR3 SINE MIR -8 200 60 281 170 0 0 chr12 74099708 74099761 -70182728 - L1ME4a LINE L1 -74 6047 5995 486 176 0 0 chr12 74100006 74100091 -70182398 + MLT1B LTR MaLR 304 388 -2 491 128 13 0 chr12 74100091 74100169 -70182320 + MLT1B-int LTR MaLR 1 79 -1292 1043 229 31 38 chr12 74100169 74100461 -70182028 - MLT1A2 LTR MaLR -81 293 4 796 258 40 13 chr12 74100716 74101015 -70181474 - L1ME4a LINE L1 -256 5865 5559 434 269 71 61 chr12 74101716 74101913 -70180576 - MIR SINE MIR 0 262 64 222 271 17 0 chr12 74103118 74103177 -70179312 + (TA)n Simple_repeat Simple_repeat 1 60 0 2152 124 3 10 chr12 74103433 74103731 -70178758 - AluSq SINE Alu -15 298 3 205 288 157 33 chr12 74104617 74104770 -70177719 + L2 LINE L2 2914 3085 -187 251 296 14 14 chr12 74104933 74105004 -70177485 - MIR SINE MIR -109 99 29 609 300 33 49 chr12 74105280 74105697 -70176792 + LTR16A1 LTR ERVL 67 456 -1 454 304 82 27 chr12 74106238 74106422 -70176067 + L2 LINE L2 3069 3262 -10 190 191 48 0 chr12 74106970 74107012 -70175477 + L2 LINE L2 3147 3190 -82 204 239 0 0 chr12 74107907 74107953 -70174536 - L2 LINE L2 -5 3308 3263 1365 183 69 28 chr12 74108140 74108430 -70174059 + AluJb SINE Alu 1 302 -10 2614 133 5 10 chr12 74108762 74109174 -70173315 - L1MA6 LINE L1 0 6300 5891 2572 128 23 0 chr12 74109174 74109566 -70172923 + L1MA6 LINE L1 5511 5911 -389 300 269 78 114 chr12 74109836 74110107 -70172382 - L2 LINE L2 -44 3228 2968 1725 168 0 14 chr12 74110145 74110451 -70172038 + AluSx SINE Alu 1 302 0 1794 163 10 0 chr12 74110495 74110796 -70171693 + AluJo SINE Alu 2 305 -7 251 100 25 0 chr12 74110986 74111026 -70171463 + MER4C LTR ERV1 425 465 0 2700 117 42 0 chr12 74111026 74111427 -70171062 + MER39B LTR ERV1 234 651 -2 1556 181 14 10 chr12 74111430 74111722 -70170767 - L1MB2 LINE L1 -101 6070 5778 690 199 120 102 chr12 74111722 74112104 -70170385 - MER34B LTR ERV1 0 565 177 227 138 75 88 chr12 74112090 74112120 -70170369 - MER34C LTR ERV1 -311 274 245 * 2666 201 60 92 chr12 74112120 74112871 -70169618 + LTR8A LTR ERV1 1 727 0 227 138 75 88 chr12 74112871 74112920 -70169569 - MER34C LTR ERV1 -340 245 196 1709 156 32 0 chr12 74112922 74113205 -70169284 + MER49 LTR ERV1 3 294 -629 1212 213 13 146 chr12 74113241 74113502 -70168987 + MER4D LTR ERV1 452 676 -130 2098 127 7 0 chr12 74113502 74113801 -70168688 - AluSx SINE Alu -11 301 1 1212 213 13 146 chr12 74113801 74113915 -70168574 + MER4D LTR ERV1 676 804 -2 569 121 28 94 chr12 74113918 74113967 -70168522 - MER34B LTR ERV1 -436 129 78 230 0 33 0 chr12 74113967 74113997 -70168492 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 569 121 28 94 chr12 74113997 74114097 -70168392 - MER34B LTR ERV1 -487 78 4 302 29 0 0 chr12 74114097 74114132 -70168357 - L1MB2 LINE L1 -520 5771 5737 1844 165 16 7 chr12 74115449 74115752 -70166737 - AluJb SINE Alu -6 306 1 1152 211 54 93 chr12 74116390 74116797 -70165692 + HAL1 LINE L1 437 827 -1680 255 265 7 88 chr12 74116808 74116955 -70165534 - L2 LINE L2 -74 3239 3105 193 352 9 37 chr12 74117080 74117188 -70165301 + L2 LINE L2 2896 3000 -272 185 351 18 0 chr12 74117842 74117899 -70164590 + L2 LINE L2 3005 3062 -210 189 107 0 0 chr12 74117955 74117983 -70164506 + (T)n Simple_repeat Simple_repeat 1 28 0 266 125 0 0 chr12 74118002 74118042 -70164447 - AluSc SINE Alu -80 219 180 359 317 0 0 chr12 74118069 74118173 -70164316 + L2 LINE L2 3208 3311 -2 565 289 124 8 chr12 74118328 74118570 -70163919 + L2 LINE L2 3012 3281 -32 180 162 0 54 chr12 74118539 74118576 -70163913 + MIR SINE MIR 206 240 -22 * 21 57 0 0 chr12 74118702 74118737 -70163752 + AT_rich Low_complexity Low_complexity 1 35 0 1424 168 20 89 chr12 74118738 74119042 -70163447 - AluJb SINE Alu -26 286 4 384 271 117 69 chr12 74119047 74119218 -70163271 + MER112 DNA MER1_type 1 189 -71 2089 125 0 7 chr12 74119218 74119523 -70162966 + AluSq SINE Alu 1 303 -10 384 271 117 69 chr12 74119523 74119598 -70162891 + MER112 DNA MER1_type 189 259 -1 2420 74 0 7 chr12 74119988 74120287 -70162202 - AluY SINE Alu -14 297 1 180 305 85 17 chr12 74120583 74120701 -70161788 + L2 LINE L2 2922 3047 -266 530 266 92 57 chr12 74120785 74121340 -70161149 + L1ME4a LINE L1 5298 5875 -246 758 129 0 0 chr12 74121530 74121631 -70160858 - AluSc SINE Alu -13 296 196 246 156 0 0 chr12 74121631 74121676 -70160813 + T-rich Low_complexity Low_complexity 1 45 0 227 288 34 0 chr12 74122550 74122609 -70159880 - MER112 DNA MER1_type -17 243 183 254 307 51 33 chr12 74123341 74123556 -70158933 - L1M4 LINE L1 -1559 4587 4369 354 212 15 0 chr12 74124049 74124115 -70158374 - MIR SINE MIR -104 158 92 360 215 156 74 chr12 74124130 74124265 -70158224 - L2 LINE L2 0 3313 3168 429 325 46 20 chr12 74125857 74126008 -70156481 - L2 LINE L2 -2 3270 3116 2357 225 140 87 chr12 74126451 74126943 -70155546 + MER69B DNA AcHobo 1 465 -2061 2295 94 0 28 chr12 74126943 74127262 -70155227 - AluSq SINE Alu -3 310 1 2357 225 140 87 chr12 74127262 74127930 -70154559 + MER69B DNA AcHobo 465 1223 -3 855 255 75 18 chr12 74128108 74128441 -70154048 + LTR16A1 LTR ERVL 81 432 -25 261 299 60 68 chr12 74128447 74128564 -70153925 + L2 LINE L2 3165 3280 -33 236 273 23 23 chr12 74129778 74129866 -70152623 + CT-rich Low_complexity Low_complexity 3 90 0 357 275 193 18 chr12 74129912 74130130 -70152359 + MIR SINE MIR 4 259 -3 23 0 0 0 chr12 74130270 74130293 -70152196 + AT_rich Low_complexity Low_complexity 1 23 0 321 261 29 0 chr12 74130413 74130482 -70152007 - MIR3 SINE MIR -53 155 85 2571 149 15 0 chr12 74130855 74131251 -70151238 + MER57A LTR ERV1 2 403 0 8740 113 30 12 chr12 74131251 74132507 -70149982 + MER57A-int LTR ERV1 1 1278 -6259 * 30022 100 26 16 chr12 74132499 74132766 -70149723 + MER57-int LTR ERV1 1083 1346 -6191 222 62 0 0 chr12 74132766 74132798 -70149691 + (CAA)n Simple_repeat Simple_repeat 2 33 0 30022 100 26 16 chr12 74132798 74133292 -70149197 + MER57-int LTR ERV1 1346 1834 -5703 1943 146 3 7 chr12 74133292 74133593 -70148896 + AluSx SINE Alu 1 300 -12 30022 100 26 16 chr12 74133593 74134553 -70147936 + MER57-int LTR ERV1 1834 2783 -4754 2006 108 4 0 chr12 74134553 74134812 -70147677 - AluSq SINE Alu -53 260 1 30022 100 26 16 chr12 74134812 74135297 -70147192 + MER57-int LTR ERV1 2783 3262 -4275 2427 88 10 0 chr12 74135297 74135605 -70146884 + AluY SINE Alu 1 311 0 30022 100 26 16 chr12 74135605 74138604 -70143885 + MER57-int LTR ERV1 3262 7188 -349 2366 93 0 6 chr12 74138619 74138931 -70143558 + THE1-int LTR MaLR 966 1275 -305 44859 35 5 4 chr12 74138943 74144871 -70137618 + L1PA3 LINE L1 8 5940 -215 1620 184 41 10 chr12 74146111 74146405 -70136084 + AluJb SINE Alu 1 303 -9 919 102 28 11 chr12 74146433 74146610 -70135879 + GA-rich Low_complexity Low_complexity 1 180 0 2178 134 3 0 chr12 74147207 74147512 -70134977 + AluSx SINE Alu 1 306 -6 319 252 69 53 chr12 74148073 74148204 -70134285 + L1MC5 LINE L1 7751 7883 -78 1717 177 3 10 chr12 74148288 74148593 -70133896 + AluJo SINE Alu 1 303 -9 499 177 8 40 chr12 74150027 74150151 -70132338 - L1ME3 LINE L1 0 6162 6043 830 176 55 18 chr12 74150151 74150316 -70132173 - FRAM SINE Alu -9 167 1 2435 215 71 24 chr12 74150316 74150948 -70131541 - L1ME3 LINE L1 -110 6052 5391 1017 145 0 30 chr12 74151594 74151760 -70130729 + AluJo SINE Alu 1 161 -151 180 77 0 0 chr12 74151774 74151800 -70130689 + (GA)n Simple_repeat Simple_repeat 1 26 0 4834 189 16 16 chr12 74252508 74254258 -70028231 + L1PBa LINE L1 2107 3922 -2940 874 318 20 7 chr12 74254262 74254567 -70027922 - L1M3a LINE L1 -5619 336 28 228 180 0 0 chr12 74255277 74255327 -70027162 - MLT1K LTR MaLR -17 571 522 590 290 12 0 chr12 74255358 74255520 -70026969 - MLT1K LTR MaLR -258 330 167 1179 192 0 0 chr12 74255850 74256180 -70026309 + G-rich Low_complexity Low_complexity 1 511 -84 1179 112 0 0 chr12 74256180 74256359 -70026130 + (G)n Simple_repeat Simple_repeat 1 179 0 1179 192 0 0 chr12 74256359 74256445 -70026044 + G-rich Low_complexity Low_complexity 510 595 0 224 306 0 14 chr12 74256635 74256707 -70025782 - L2 LINE L2 -1 3312 3242 329 300 215 0 chr12 74256736 74256918 -70025571 + MIR SINE MIR 32 250 -12 330 325 19 21 chr12 74257078 74257301 -70025188 + CT-rich Low_complexity Low_complexity 1 222 0 195 219 24 12 chr12 74257323 74257405 -70025084 + CT-rich Low_complexity Low_complexity 5 87 0 2090 126 0 0 chr12 74257665 74257950 -70024539 + AluSx SINE Alu 5 289 -23 2380 93 0 0 chr12 74257960 74258260 -70024229 + AluY SINE Alu 1 300 -11 262 289 0 0 chr12 74258264 74258354 -70024135 - MLT1K LTR MaLR -443 147 58 465 314 10 21 chr12 74258383 74258677 -70023812 + CT-rich Low_complexity Low_complexity 1 291 0 292 232 30 20 chr12 74258834 74258933 -70023556 + MER103 DNA DNA 46 145 -21 221 307 50 30 chr12 74259018 74259119 -70023370 - MIR SINE MIR -55 153 51 1815 176 3 7 chr12 74259278 74259584 -70022905 + AluSx SINE Alu 1 305 -7 25 0 0 0 chr12 74260690 74260715 -70021774 + AT_rich Low_complexity Low_complexity 1 25 0 485 266 24 0 chr12 74260796 74260920 -70021569 + MER94 DNA DNA 1 127 -7 198 143 24 0 chr12 74261282 74261324 -70021165 - MIR SINE MIR -69 139 97 216 276 109 83 chr12 74261432 74261624 -70020865 - L2 LINE L2 -90 3182 2986 249 368 39 26 chr12 74261763 74261918 -70020571 - L2 LINE L2 -557 2757 2601 319 274 0 0 chr12 74262063 74262147 -70020342 + GA-rich Low_complexity Low_complexity 1 84 0 1010 207 18 112 chr12 74262173 74262565 -70019924 + MLT1A1 LTR MaLR 11 365 0 1871 176 15 0 chr12 74262636 74262966 -70019523 + Tigger3b DNA MER2_type 1 335 -896 2539 77 11 0 chr12 74262967 74263319 -70019170 - L1PA10 LINE L1 -195 5973 5618 1080 131 28 17 chr12 74263320 74263516 -70018973 + L1PA10 LINE L1 5983 6168 0 4125 141 94 12 chr12 74263765 74264593 -70017896 + Tigger3b DNA MER2_type 330 1225 -6 1758 134 48 106 chr12 74265264 74265697 -70016792 + L1MA4A LINE L1 5893 6300 -3 201 306 47 47 chr12 74265824 74265909 -70016580 - MIR3 SINE MIR -5 203 119 200 233 0 33 chr12 74266271 74266331 -70016158 + GA-rich Low_complexity Low_complexity 1 58 0 260 91 23 0 chr12 74266601 74266645 -70015844 + (GA)n Simple_repeat Simple_repeat 2 46 0 380 279 0 0 chr12 74267569 74267655 -70014834 + MIR3 SINE MIR 78 163 -45 31 0 0 0 chr12 74267760 74267791 -70014698 + AT_rich Low_complexity Low_complexity 1 31 0 14578 27 3 0 chr12 74267791 74270296 -70012193 - L1PA3 LINE L1 -2 6153 3644 671 235 17 71 chr12 74270302 74270540 -70011949 + MER102b DNA MER1_type 114 338 -3 260 225 101 11 chr12 74270742 74270831 -70011658 + MLT1J LTR MaLR 95 191 -320 267 257 50 64 chr12 74270896 74271036 -70011453 + MLT1J LTR MaLR 332 469 -42 259 333 54 0 chr12 74272776 74272869 -70009620 + MIR SINE MIR 51 148 -114 1395 296 14 11 chr12 74273075 74273517 -70008972 + LTR16B LTR ERVL 1 443 -21 322 315 23 15 chr12 74274492 74274622 -70007867 - L1M LINE L1 -832 5410 5280 379 312 0 9 chr12 74274713 74274822 -70007667 - L2 LINE L2 0 3272 3165 10473 203 48 35 chr12 74274943 74275824 -70006665 - L1MB1 LINE L1 -2 5990 5122 2186 112 3 0 chr12 74275824 74276111 -70006378 - AluSx SINE Alu -24 288 1 10473 203 48 35 chr12 74276111 74277202 -70005287 - L1MB1 LINE L1 -870 5122 4046 1698 211 43 3 chr12 74277202 74277552 -70004937 + MLT1A1 LTR MaLR 2 365 0 10473 203 48 35 chr12 74277552 74278320 -70004169 - L1MB1 LINE L1 -1946 4046 3289 2125 124 0 13 chr12 74278320 74278634 -70003855 - AluSg SINE Alu 0 310 1 10473 203 48 35 chr12 74278634 74280163 -70002326 - L1MB1 LINE L1 -2703 3289 1615 239 288 0 0 chr12 74280212 74280271 -70002218 + MER21B LTR ERV1 22 80 -783 2104 221 21 63 chr12 74280421 74281042 -70001447 + MER21B LTR ERV1 145 739 -124 2631 243 22 31 chr12 74281117 74283091 -69999398 - L1MB1 LINE L1 -4488 1484 1 261 0 0 0 chr12 74283103 74283132 -69999357 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 649 328 133 18 chr12 74283151 74283639 -69998850 - L2 LINE L2 -407 2907 2364 21 0 0 0 chr12 74284581 74284602 -69997887 + AT_rich Low_complexity Low_complexity 1 21 0 366 333 16 16 chr12 74287447 74287570 -69994919 + L2 LINE L2 3187 3309 -4 260 299 90 15 chr12 74288203 74288337 -69994152 + MIR3 SINE MIR 16 159 -49 198 371 96 32 chr12 74288631 74288911 -69993578 - L2 LINE L2 -52 3220 2923 231 61 0 0 chr12 74292697 74292730 -69989759 + (T)n Simple_repeat Simple_repeat 1 33 0 1526 227 87 92 chr12 74292807 74292952 -69989537 - L1MC5 LINE L1 -133 7828 7684 2270 92 0 3 chr12 74292952 74293244 -69989245 + AluSg SINE Alu 3 293 -17 1526 227 87 92 chr12 74293244 74294198 -69988291 - L1MC5 LINE L1 -277 7684 6734 2111 116 0 3 chr12 74294624 74294954 -69987535 - AluSx SINE Alu 0 329 1 739 184 7 14 chr12 74296358 74296505 -69985984 + MIR SINE MIR 62 207 -55 336 344 70 23 chr12 74296713 74296928 -69985561 + MIR SINE MIR 28 252 -10 465 279 35 6 chr12 74297156 74297328 -69985161 + MER115 DNA AcHobo 502 678 -15 2497 70 3 0 chr12 74297618 74297919 -69984570 + AluY SINE Alu 1 302 -9 687 281 45 18 chr12 74297930 74298154 -69984335 - MIR SINE MIR -18 244 15 260 331 62 45 chr12 74298156 74298334 -69984155 + L2 LINE L2 3114 3294 -19 777 251 95 16 chr12 74298344 74298587 -69983902 - MIR SINE MIR 0 262 1 1217 241 50 34 chr12 74298767 74299124 -69983365 - MLT1A2 LTR MaLR -11 363 1 863 251 132 45 chr12 74299124 74299531 -69982958 - LTR33A LTR ERVL -76 447 4 2049 153 83 0 chr12 74299542 74299914 -69982575 + MER57A LTR ERV1 1 403 0 1176 158 18 27 chr12 74300092 74300313 -69982176 + MER20 DNA MER1_type 1 219 0 27 29 0 0 chr12 74300739 74300773 -69981716 + AT_rich Low_complexity Low_complexity 1 34 0 2206 93 31 88 chr12 74301204 74301590 -69980899 + THE1B LTR MaLR 1 364 0 11313 101 17 5 chr12 74301591 74303150 -69979339 + THE1B-int LTR MaLR 2 1579 -1 2370 125 8 22 chr12 74303151 74303519 -69978970 + THE1B LTR MaLR 1 363 -1 330 284 192 35 chr12 74303593 74303910 -69978579 + L2 LINE L2 2935 3301 -12 561 295 119 21 chr12 74303996 74304189 -69978300 - MIR SINE MIR -1 261 50 1386 216 169 58 chr12 74304195 74304939 -69977550 + LTR1B LTR ERV1 1 826 0 198 0 0 0 chr12 74305250 74305272 -69977217 + (T)n Simple_repeat Simple_repeat 1 22 0 599 264 78 16 chr12 74305526 74305719 -69976770 + MIR SINE MIR 14 218 -44 22 0 0 0 chr12 74306358 74306380 -69976109 + AT_rich Low_complexity Low_complexity 1 22 0 2093 152 35 55 chr12 74307617 74307730 -69974759 + MSTD LTR MaLR 1 115 -281 4069 166 29 94 chr12 74307730 74308653 -69973836 - MER21B LTR ERV1 0 863 1 2093 152 35 55 chr12 74308653 74308941 -69973548 + MSTD LTR MaLR 115 394 -2 1084 228 90 21 chr12 74309984 74310030 -69972459 - L1ME3A LINE L1 -1 6169 6128 2618 200 32 21 chr12 74310030 74310591 -69971898 + MLT1F1 LTR MaLR 1 567 0 1084 228 90 21 chr12 74310591 74310922 -69971567 - L1ME3A LINE L1 -42 6128 5766 42540 34 21 2 chr12 74311158 74317190 -69965299 - L1PA2 LINE L1 0 6155 2 1615 230 63 24 chr12 74317181 74317584 -69964905 - L1ME3A LINE L1 -174 5996 5571 * 2328 79 3 3 chr12 74317584 74317887 -69964602 - AluY SINE Alu -8 303 1 1615 230 63 24 chr12 74317887 74317944 -69964545 - L1ME3A LINE L1 -599 5571 5518 2503 73 0 0 chr12 74318087 74318389 -69964100 + AluY SINE Alu 1 302 -9 697 307 27 4 chr12 74318400 74318625 -69963864 - MIR SINE MIR -18 244 15 1084 127 0 6 chr12 74318768 74318926 -69963563 + AluSg/x SINE Alu 154 310 -2 1843 179 6 17 chr12 74319142 74319494 -69962995 + MER7A DNA MER2_type 1 346 0 327 303 56 0 chr12 74322084 74322173 -69960316 - L2 LINE L2 -23 3290 3197 248 156 133 0 chr12 74322555 74322600 -69959889 + MER5A DNA MER1_type 139 189 0 324 217 0 0 chr12 74325357 74325417 -69957072 + MER31-int LTR ERV1 418 477 -4459 885 369 51 22 chr12 74326767 74327572 -69954917 + MER31-int LTR ERV1 3053 3880 -2921 1819 99 14 32 chr12 74328176 74328459 -69954030 - THE1B LTR MaLR -86 278 1 245 327 55 0 chr12 74329388 74329498 -69952991 - MLT1J2 LTR MaLR -277 173 58 330 49 24 49 chr12 74329527 74329609 -69952880 + (TA)n Simple_repeat Simple_repeat 2 81 0 318 26 0 0 chr12 74329971 74330010 -69952479 + (TG)n Simple_repeat Simple_repeat 2 40 0 635 310 129 27 chr12 74330086 74330418 -69952071 + LTR33 LTR ERVL 6 371 -150 817 239 94 0 chr12 74330688 74330901 -69951588 + MIR SINE MIR 4 236 -26 1752 175 59 25 chr12 74331017 74331423 -69951066 + LTR52 LTR ERVL 1 420 -1 192 203 29 101 chr12 74331714 74331783 -69950706 - MER5B DNA MER1_type -4 174 111 227 224 0 0 chr12 74332051 74332118 -69950371 - L1MA1 LINE L1 -353 5949 5883 2051 164 102 18 chr12 74333265 74333831 -69948658 + L1MB8 LINE L1 5453 6177 -1 210 282 56 70 chr12 74333866 74334008 -69948481 + MIR SINE MIR 89 228 -34 460 305 178 15 chr12 74334100 74334431 -69948058 + MLT1J2 LTR MaLR 66 450 0 225 197 0 79 chr12 74334754 74334830 -69947659 - L2 LINE L2 -108 3205 3136 1987 149 0 13 chr12 74334908 74335224 -69947265 + AluSx SINE Alu 1 312 0 477 293 123 53 chr12 74335226 74335526 -69946963 - L2 LINE L2 -189 3124 2804 804 104 22 22 chr12 74335949 74336084 -69946405 - L1MA2 LINE L1 -2 6302 6168 870 100 39 221 chr12 74336088 74336368 -69946121 - L1 LINE L1 -1809 5756 5528 17454 164 105 13 chr12 74336369 74336896 -69945593 - L1 LINE L1 -2465 5100 4623 275 0 29 0 chr12 74336896 74336931 -69945558 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 17454 164 105 13 chr12 74336931 74337132 -69945357 - L1 LINE L1 -2942 4623 4442 1607 197 7 14 chr12 74337132 74337426 -69945063 - AluJo SINE Alu -9 303 12 17454 164 105 13 chr12 74337426 74341359 -69941130 - L1 LINE L1 -3123 4442 12 21 71 0 0 chr12 74341397 74341439 -69941050 + AT_rich Low_complexity Low_complexity 1 42 0 206 293 132 36 chr12 74342812 74342979 -69939510 - L2 LINE L2 -527 2787 2605 486 311 229 25 chr12 74342991 74343357 -69939132 + L2 LINE L2 1928 2368 -946 188 306 224 27 chr12 74343608 74343791 -69938698 - MIR SINE MIR -24 238 20 283 190 38 25 chr12 74344029 74344108 -69938381 - L1MA8 LINE L1 -7 6284 6205 1363 240 12 109 chr12 74344156 74344732 -69937757 - MLT2B1 LTR ERVL 0 520 1 221 250 36 0 chr12 74346498 74346554 -69935935 - L2 LINE L2 0 3313 3256 418 384 65 0 chr12 74346817 74347046 -69935443 - MIR SINE MIR -6 256 13 323 299 37 36 chr12 74348340 74348727 -69933762 + L1MC/D LINE L1 5381 5826 -336 334 315 31 8 chr12 74349930 74350057 -69932432 - MER94 DNA DNA -1 133 4 324 0 0 0 chr12 74350279 74350315 -69932174 + (TG)n Simple_repeat Simple_repeat 1 36 0 3014 138 76 14 chr12 74350453 74351016 -69931473 - L1MA4 LINE L1 -1 6299 5702 765 234 29 76 chr12 74352125 74352294 -69930195 + MIR SINE MIR 3 154 -108 993 154 0 11 chr12 74352294 74352476 -69930013 - L1MB8 LINE L1 0 6178 5999 765 234 29 76 chr12 74352476 74352581 -69929908 + MIR SINE MIR 154 262 0 191 186 115 115 chr12 74352761 74352874 -69929615 + L3 LINE CR1 873 985 -592 2441 222 75 17 chr12 74353506 74354083 -69928406 + MER44D DNA MER2_type 1 610 -95 275 167 0 15 chr12 74354111 74354177 -69928312 - L1PB3 LINE L1 -3 6151 6087 * 1387 146 21 9 chr12 74354165 74354398 -69928091 - L1PB3 LINE L1 -22 6132 5897 243 271 24 0 chr12 74354400 74354485 -69928004 - L1 LINE L1 -986 5876 5790 2836 130 12 0 chr12 74354512 74354936 -69927553 - MER57B LTR ERV1 -5 429 1 1465 104 126 9 chr12 74354936 74355166 -69927323 - MER57B-int LTR ERV1 0 7537 7281 716 125 23 31 chr12 74355168 74355296 -69927193 - LTR54B LTR ERV1 -367 131 5 8853 159 60 54 chr12 74355296 74358922 -69923567 - MER57B-int LTR ERV1 -389 7148 2167 959 144 0 7 chr12 74358918 74359071 -69923418 - MER57B-int LTR ERV1 -3929 2017 1866 * 2679 150 39 19 chr12 74359075 74359596 -69922893 - MER57B-int LTR ERV1 -4232 3584 648 3622 142 61 0 chr12 74359617 74360175 -69922314 - MER57B-int LTR ERV1 -5067 879 288 * 4262 146 23 1 chr12 74360172 74360830 -69921659 - MER57B-int LTR ERV1 -6865 672 1 2845 126 7 5 chr12 74360835 74361263 -69921226 - MER57B LTR ERV1 -5 429 1 2947 204 9 12 chr12 74361263 74361951 -69920538 - L1 LINE L1 -1069 5793 5108 2468 188 40 14 chr12 74361965 74363159 -69919330 - L1PBa LINE L1 -3364 3498 2229 658 280 9 28 chr12 74363152 74363370 -69919119 - L1PBa LINE L1 -5421 1442 1229 * 1530 317 48 16 chr12 74363344 74364089 -69918400 - L1PBa LINE L1 -6092 771 3 384 119 0 0 chr12 74364099 74364158 -69918331 + (TA)n Simple_repeat Simple_repeat 2 60 0 631 183 0 38 chr12 74364158 74364289 -69918200 + Tigger7 DNA MER2_type 2362 2487 0 634 278 38 34 chr12 74364720 74364929 -69917560 - MIR SINE MIR -16 246 37 236 312 193 0 chr12 74364972 74365081 -69917408 + L2 LINE L2 3125 3254 -18 1402 153 13 13 chr12 74365143 74365379 -69917110 - Tigger2 DNA MER2_type 0 2718 2483 4104 135 57 22 chr12 74365452 74366177 -69916312 - Tigger2 DNA MER2_type -1968 750 1 21 57 0 0 chr12 74366203 74366238 -69916251 + AT_rich Low_complexity Low_complexity 1 35 0 1837 180 0 7 chr12 74368066 74368372 -69914117 - AluJo SINE Alu -7 305 2 194 243 27 54 chr12 74369024 74369049 -69913440 + L2 LINE L2 3242 3266 -47 429 20 0 0 chr12 74369049 74369099 -69913390 + (CA)n Simple_repeat Simple_repeat 2 51 0 194 243 27 54 chr12 74369099 74369147 -69913342 + L2 LINE L2 3266 3313 0 328 199 75 116 chr12 74369340 74369486 -69913003 - MIR SINE MIR -79 183 44 684 278 39 26 chr12 74369673 74369907 -69912582 - MIR SINE MIR 0 262 26 1527 199 36 12 chr12 74371164 74371495 -69910994 + MER58B DNA MER1_type 2 340 -1 292 372 26 9 chr12 74371907 74372020 -69910469 - MIR3 SINE MIR -81 127 13 658 100 9 9 chr12 74373276 74373386 -69909103 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 1736 114 95 16 chr12 74374063 74374369 -69908120 + L1MC1 LINE L1 6002 6331 -2 400 242 133 0 chr12 74375345 74375465 -69907024 + MIR SINE MIR 93 228 -34 419 229 9 145 chr12 74375626 74375853 -69906636 - HAL1 LINE L1 -778 1729 1534 1228 268 22 6 chr12 74375870 74376191 -69906298 + L1M3a LINE L1 11 336 -5619 9354 155 57 9 chr12 74376195 74379798 -69902691 - L1PBa LINE L1 -2940 3922 2 5643 146 36 30 chr12 74379813 74380136 -69902353 + L1MA9 LINE L1 4990 5309 -1003 1951 133 10 17 chr12 74380136 74380429 -69902060 + AluJo SINE Alu 1 291 -21 5643 146 36 30 chr12 74380429 74381407 -69901082 + L1MA9 LINE L1 5309 6309 -3 565 241 156 0 chr12 74381465 74381702 -69900787 - HAL1 LINE L1 -1087 1420 1147 234 0 0 0 chr12 74381720 74381746 -69900743 + (TG)n Simple_repeat Simple_repeat 1 26 0 1313 181 57 34 chr12 74381765 74382030 -69900459 - AluJb SINE Alu -37 275 5 2726 262 86 34 chr12 74382034 74383156 -69899333 - HAL1 LINE L1 -1320 1187 8 318 334 139 36 chr12 74383237 74383677 -69898812 + L2 LINE L2 1934 2418 -896 270 143 0 0 chr12 74383795 74383844 -69898645 + (TG)n Simple_repeat Simple_repeat 2 50 0 717 191 0 0 chr12 74383941 74384082 -69898407 - L1 LINE L1 -1556 4590 4450 10997 178 17 49 chr12 74384139 74385605 -69896884 - L1PB3 LINE L1 -4 6866 5355 234 0 0 0 chr12 74385605 74385631 -69896858 + (TTG)n Simple_repeat Simple_repeat 2 27 0 10997 178 17 49 chr12 74385631 74386961 -69895528 - L1PB3 LINE L1 -1515 5355 3984 216 0 0 0 chr12 74386961 74386985 -69895504 + (TTA)n Simple_repeat Simple_repeat 1 24 0 10997 178 17 49 chr12 74386985 74387428 -69895061 - L1PB3 LINE L1 -2886 3984 3768 2205 112 3 0 chr12 74387428 74387722 -69894767 - AluSg SINE Alu -15 295 1 10997 178 17 49 chr12 74387722 74388193 -69894296 - L1PB3 LINE L1 -3102 3768 3284 3615 141 58 12 chr12 74388197 74388866 -69893623 - L1PB3 LINE L1 -5175 1688 989 661 237 0 0 chr12 74388866 74389018 -69893471 - L1PB3 LINE L1 -6709 154 3 191 376 64 8 chr12 74389040 74389165 -69893324 + L2 LINE L2 2684 2815 -499 700 325 48 8 chr12 74389344 74389596 -69892893 + MIR SINE MIR 1 262 0 433 325 60 6 chr12 74389634 74389800 -69892689 + L2 LINE L2 3098 3272 0 1578 172 52 49 chr12 74389838 74390263 -69892226 + LTR37A LTR ERV1 1 426 0 275 227 76 67 chr12 74391353 74391472 -69891017 - MIR SINE MIR 0 262 143 258 332 124 36 chr12 74391480 74391754 -69890735 + L2 LINE L2 2947 3244 -69 1785 232 60 5 chr12 74393081 74393517 -69888972 + LTR40b LTR ERVL 3 462 0 5208 169 44 24 chr12 74393729 74394475 -69888014 + L1MC2 LINE L1 5185 5962 -382 2302 90 7 0 chr12 74394475 74394775 -69887714 + AluSg SINE Alu 1 302 -8 5208 169 44 24 chr12 74394775 74395157 -69887332 + L1MC2 LINE L1 5962 6335 -9 22 56 0 0 chr12 74395939 74395975 -69886514 + AT_rich Low_complexity Low_complexity 1 36 0 1321 101 18 9 chr12 74396089 74396306 -69886183 - L1MA1 LINE L1 -105 6197 5979 1033 304 84 11 chr12 74396808 74397248 -69885241 + L2 LINE L2 1756 2227 -1087 2551 131 18 55 chr12 74397248 74397562 -69884927 + MER57B LTR ERV1 1 294 -140 6206 55 17 43 chr12 74397562 74398422 -69884067 + L1PA7 LINE L1 5302 6139 -15 2551 131 18 55 chr12 74398422 74398558 -69883931 + MER57B LTR ERV1 294 434 0 835 305 136 31 chr12 74398559 74399394 -69883095 + L2 LINE L2 2225 3259 -54 222 250 0 19 chr12 74399405 74399457 -69883032 - L2 LINE L2 -37 3235 3185 463 264 93 0 chr12 74399512 74399652 -69882837 - L2 LINE L2 -2 3311 3159 5640 107 58 71 chr12 74399702 74401298 -69881191 + pTR5 LTR ERV1 740 2438 0 612 308 101 8 chr12 74401300 74401537 -69880952 - L2 LINE L2 -342 2972 2714 24 0 0 0 chr12 74402070 74402094 -69880395 + AT_rich Low_complexity Low_complexity 1 24 0 368 333 16 16 chr12 74404947 74405070 -69877419 + L2 LINE L2 3187 3309 -4 266 291 90 15 chr12 74405703 74405837 -69876652 + MIR3 SINE MIR 16 159 -49 186 371 96 32 chr12 74406131 74406411 -69876078 - L2 LINE L2 -52 3220 2923 231 61 0 0 chr12 74410195 74410228 -69872261 + (T)n Simple_repeat Simple_repeat 1 33 0 1851 224 86 91 chr12 74410305 74410450 -69872039 - L1MC5 LINE L1 -133 7828 7684 2269 92 0 3 chr12 74410450 74410742 -69871747 + AluSg SINE Alu 3 293 -17 1851 224 86 91 chr12 74410742 74411696 -69870793 - L1MC5 LINE L1 -277 7684 6734 2103 116 0 3 chr12 74412122 74412452 -69870037 - AluSx SINE Alu 0 329 1 740 184 7 14 chr12 74413856 74414003 -69868486 + MIR SINE MIR 62 207 -55 341 344 70 23 chr12 74414211 74414426 -69868063 + MIR SINE MIR 28 252 -10 516 279 35 6 chr12 74414654 74414826 -69867663 + MER115 DNA AcHobo 502 678 -15 2482 71 0 0 chr12 74415118 74415412 -69867077 + AluY SINE Alu 3 296 -15 1916 129 100 29 chr12 74415465 74415805 -69866684 - THE1B LTR MaLR 0 364 1 4272 101 45 90 chr12 74415836 74416924 -69865565 - MER11A LTR ERVK 0 1266 1 1974 93 0 15 chr12 74417092 74417351 -69865138 - AluSq SINE Alu -13 300 46 549 307 66 85 chr12 74417592 74418181 -69864308 + HAL1b LINE L1 69 481 -867 1372 209 87 28 chr12 74419318 74419673 -69862816 - MLT1B LTR MaLR -10 380 5 26 64 0 0 chr12 74419906 74419953 -69862536 + AT_rich Low_complexity Low_complexity 1 47 0 251 279 33 16 chr12 74421133 74421194 -69861295 + MIR3 SINE MIR 116 177 -31 241 338 0 0 chr12 74423595 74423672 -69858817 + CT-rich Low_complexity Low_complexity 4 80 0 22 0 0 0 chr12 74424026 74424048 -69858441 + AT_rich Low_complexity Low_complexity 1 22 0 306 339 31 39 chr12 74425251 74425381 -69857108 - MIR3 SINE MIR -9 199 71 947 197 29 66 chr12 74425996 74426240 -69856249 - L1ME2 LINE L1 -105 6059 5825 599 219 8 16 chr12 74426451 74426579 -69855910 + L2 LINE L2 3186 3312 -1 237 65 0 0 chr12 74426980 74427011 -69855478 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 368 308 0 62 chr12 74427733 74427863 -69854626 - MER5A DNA MER1_type -30 159 38 185 91 0 30 chr12 74428843 74428866 -69853623 + (TC)n Simple_repeat Simple_repeat 2 25 -8 2091 115 0 20 chr12 74428866 74429162 -69853327 - AluSx SINE Alu -22 290 1 185 91 0 30 chr12 74429162 74429171 -69853318 + (TC)n Simple_repeat Simple_repeat 25 33 0 21 0 0 0 chr12 74429173 74429194 -69853295 + AT_rich Low_complexity Low_complexity 1 21 0 1535 192 0 34 chr12 74429194 74429486 -69853003 - AluJo SINE Alu -26 286 5 574 219 196 58 chr12 74429540 74429764 -69852725 - MIR SINE MIR -2 260 6 551 365 86 38 chr12 74429994 74430470 -69852019 - L3 LINE CR1 -1 1576 1078 534 205 6 19 chr12 74430905 74431066 -69851423 + CT-rich Low_complexity Low_complexity 3 161 0 846 126 0 33 chr12 74431089 74431272 -69851217 + (TCC)n Simple_repeat Simple_repeat 2 178 0 620 356 106 0 chr12 74431889 74432181 -69850308 - L3 LINE CR1 -623 954 632 301 238 46 93 chr12 74432254 74432405 -69850084 - MIR SINE MIR -15 247 104 24 32 0 0 chr12 74432435 74432466 -69850023 + AT_rich Low_complexity Low_complexity 1 31 0 2182 103 0 10 chr12 74433094 74433396 -69849093 + AluSc SINE Alu 1 299 -10 485 335 15 68 chr12 74434438 74434704 -69847785 - L2 LINE L2 0 3272 3021 183 326 206 35 chr12 74434770 74434911 -69847578 - L2 LINE L2 -1 3271 3107 1774 179 0 6 chr12 74436226 74436538 -69845951 + AluJb SINE Alu 3 312 0 22 35 0 0 chr12 74436731 74436760 -69845729 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 74437813 74437837 -69844652 + AT_rich Low_complexity Low_complexity 1 24 0 431 223 90 21 chr12 74441805 74441908 -69840581 - L1ME3 LINE L1 -1 6169 6049 728 209 0 8 chr12 74441908 74442042 -69840447 + FLAM_A SINE Alu 1 133 0 431 223 90 21 chr12 74442042 74442089 -69840400 - L1ME3 LINE L1 -121 6049 6007 676 205 4 164 chr12 74442090 74442334 -69840155 - MER63A DNA MER1_type 0 210 6 36809 31 0 1 chr12 74442375 74447634 -69834855 - L1PA2 LINE L1 0 6155 900 205 211 18 18 chr12 74447668 74447725 -69834764 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 25 0 0 0 chr12 74447807 74447832 -69834657 + AT_rich Low_complexity Low_complexity 1 25 0 1247 167 23 9 chr12 74447935 74448150 -69834339 - MLT2B2 LTR ERVL -8 507 290 431 313 154 28 chr12 74448167 74448563 -69833926 + L1MC4a LINE L1 4724 5169 -977 279 263 18 26 chr12 74448678 74448792 -69833697 + L1MC4a LINE L1 5254 5366 -2442 700 177 0 46 chr12 74448796 74448926 -69833563 + FLAM_C SINE Alu 1 124 -19 1810 268 68 46 chr12 74448945 74449752 -69832737 + L1MC4a LINE L1 5401 6225 -1583 390 224 0 0 chr12 74449768 74449844 -69832645 - Tigger5 DNA MER2_type -6 2317 2242 297 270 27 0 chr12 74449834 74449908 -69832581 + Tigger5 DNA MER2_type 2242 2317 -6 * 432 208 13 0 chr12 74449910 74449987 -69832502 - Tigger5 DNA MER2_type -2244 79 2 538 297 55 50 chr12 74450023 74450440 -69832049 + L1MC4a LINE L1 6292 6710 -1098 1988 173 28 6 chr12 74450485 74450837 -69831652 + MLT1A1 LTR MaLR 1 360 -5 336 244 37 37 chr12 74450884 74451048 -69831441 + L1MC5 LINE L1 7262 7425 -536 240 35 0 0 chr12 74451713 74451742 -69830747 + (A)n Simple_repeat Simple_repeat 1 29 0 19353 162 41 10 chr12 74452054 74459008 -69823481 + L1MA2 LINE L1 16 7228 -495 1987 150 3 0 chr12 74459008 74459314 -69823175 + AluSx SINE Alu 5 311 -1 19353 162 41 10 chr12 74459314 74459826 -69822663 + L1MA2 LINE L1 7228 7723 0 255 294 0 0 chr12 74460535 74460603 -69821886 - L1ME LINE L1 -484 5686 5619 645 321 52 44 chr12 74460751 74461156 -69821333 - L1MEd LINE L1 -5458 661 254 343 291 54 31 chr12 74461582 74461843 -69820646 - L1ME LINE L1 -1319 4827 4561 1118 257 185 43 chr12 74461902 74462306 -69820183 + L1ME3 LINE L1 2418 2763 -3383 3775 126 20 10 chr12 74462306 74462902 -69819587 + LTR43 LTR ERV1 1 602 0 1118 257 185 43 chr12 74462902 74463406 -69819083 + L1ME3 LINE L1 2763 3455 -2691 1318 256 67 36 chr12 74463408 74464020 -69818469 + L1ME3 LINE L1 4258 4888 -1258 490 227 333 3 chr12 74464031 74464313 -69818176 - LTR50 LTR ERVL 0 795 421 * 889 198 108 22 chr12 74464309 74464541 -69817948 - LTR50 LTR ERVL -543 252 1 900 286 43 3 chr12 74464543 74464868 -69817621 + L1ME3 LINE L1 4896 5233 -913 1982 261 95 24 chr12 74465027 74465351 -69817138 + L1ME3 LINE L1 5255 5555 -607 558 256 0 16 chr12 74465351 74465476 -69817013 + FLAM_A SINE Alu 1 123 -10 1982 261 95 24 chr12 74465476 74465899 -69816590 + L1ME3 LINE L1 5555 6055 -107 342 335 199 5 chr12 74465981 74466187 -69816302 - MIR SINE MIR -2 260 15 185 333 154 0 chr12 74466320 74466437 -69816052 - L2 LINE L2 0 3313 3179 1465 259 51 60 chr12 74466879 74467668 -69814821 - L1M4 LINE L1 -4960 1582 801 233 314 12 0 chr12 74467685 74467771 -69814718 + L1ME3 LINE L1 6041 6127 -35 * 1599 199 9 0 chr12 74467769 74468085 -69814404 - L1 LINE L1 -2093 4053 3735 1245 217 53 0 chr12 74468113 74468412 -69814077 + L1M3b LINE L1 1072 1386 -4895 485 349 87 40 chr12 74468843 74469221 -69813268 - L1MEd LINE L1 -5556 563 168 245 398 57 32 chr12 74469370 74469493 -69812996 + L2 LINE L2 3127 3252 -20 21 0 0 0 chr12 74469756 74469777 -69812712 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 74470849 74470878 -69811611 + AT_rich Low_complexity Low_complexity 1 29 0 1596 215 18 12 chr12 74471092 74471431 -69811058 + MER58B DNA MER1_type 1 341 0 246 370 23 30 chr12 74471984 74472246 -69810243 + L2 LINE L2 2716 2975 -339 661 294 6 0 chr12 74472274 74472437 -69810052 + MLT1K LTR MaLR 167 330 -258 249 180 0 0 chr12 74472468 74472518 -69809971 + MLT1K LTR MaLR 522 571 -17 394 263 33 13 chr12 74473640 74473792 -69808697 - L1ME4a LINE L1 -1 6120 5966 182 369 48 12 chr12 74474024 74474108 -69808381 + MIR SINE MIR 9 95 -167 232 292 189 11 chr12 74474123 74474308 -69808181 - L2 LINE L2 -4 3309 3092 224 283 217 11 chr12 74474324 74474416 -69808073 + L2 LINE L2 3160 3270 -2 536 283 72 30 chr12 74475683 74475849 -69806640 + L2 LINE L2 2672 2844 -470 329 247 75 0 chr12 74475871 74475964 -69806525 + L2 LINE L2 3214 3313 0 547 250 28 17 chr12 74475985 74476161 -69806328 - MER5B DNA MER1_type 0 178 1 793 295 68 0 chr12 74477231 74477512 -69804977 + MER46C DNA MER2_type 1 300 -38 456 276 0 48 chr12 74477829 74477974 -69804515 + FLAM_A SINE Alu 1 138 -4 223 294 35 47 chr12 74478661 74478746 -69803743 - MIR3 SINE MIR -5 203 120 25 0 0 0 chr12 74479142 74479167 -69803322 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr12 74479425 74479447 -69803042 + AT_rich Low_complexity Low_complexity 1 22 0 32 81 0 0 chr12 74479478 74479552 -69802937 + AT_rich Low_complexity Low_complexity 1 74 0 2766 169 179 118 chr12 74479552 74480087 -69802402 - L1MD3 LINE L1 -18 7977 7476 531 169 111 27 chr12 74480087 74480200 -69802289 - MLT1F1 LTR MaLR -459 108 9 2766 169 179 118 chr12 74480200 74480539 -69801950 - L1MD3 LINE L1 -519 7476 6931 1045 265 111 47 chr12 74481391 74481897 -69800592 - L2 LINE L2 -12 3301 2777 210 296 14 14 chr12 74483438 74483509 -69798980 + GA-rich Low_complexity Low_complexity 2 72 0 1429 189 39 8 chr12 74486163 74486515 -69795974 + MSTA LTR MaLR 1 428 0 1665 241 88 57 chr12 74486566 74486886 -69795603 - L1ME3A LINE L1 -98 6072 5763 2212 86 3 10 chr12 74486886 74487199 -69795290 - AluY SINE Alu 0 311 1 1665 241 88 57 chr12 74487199 74487473 -69795016 - L1ME3A LINE L1 -407 5763 5446 2155 120 63 20 chr12 74487473 74487822 -69794667 - THE1B LTR MaLR 0 364 1 1665 241 88 57 chr12 74487822 74487995 -69794494 - L1ME3A LINE L1 -724 5446 5280 21 36 0 0 chr12 74488265 74488293 -69794196 + AT_rich Low_complexity Low_complexity 1 28 0 297 233 6 50 chr12 74489873 74490032 -69792457 + C-rich Low_complexity Low_complexity 1 152 0 282 343 102 9 chr12 74490679 74490787 -69791702 - L2 LINE L2 -5 3267 3150 324 70 0 0 chr12 74491479 74491522 -69790967 + (TA)n Simple_repeat Simple_repeat 1 43 0 226 250 36 0 chr12 74492483 74492539 -69789950 - L2 LINE L2 0 3313 3256 432 380 65 0 chr12 74492802 74493031 -69789458 - MIR SINE MIR -6 256 13 334 299 37 36 chr12 74494325 74494712 -69787777 + L1MC/D LINE L1 5381 5826 -336 340 315 31 8 chr12 74495915 74496042 -69786447 - MER94 DNA DNA -1 133 4 324 0 0 0 chr12 74496264 74496300 -69786189 + (TG)n Simple_repeat Simple_repeat 1 36 0 2991 142 76 14 chr12 74496438 74497001 -69785488 - L1MA4 LINE L1 -1 6299 5702 766 234 29 76 chr12 74498110 74498279 -69784210 + MIR SINE MIR 3 154 -108 992 154 0 11 chr12 74498279 74498461 -69784028 - L1MB8 LINE L1 0 6178 5999 766 234 29 76 chr12 74498461 74498566 -69783923 + MIR SINE MIR 154 262 0 196 186 115 115 chr12 74498746 74498859 -69783630 + L3 LINE CR1 873 985 -592 2496 222 75 17 chr12 74499491 74500068 -69782421 + MER44D DNA MER2_type 1 610 -95 276 167 0 15 chr12 74500096 74500162 -69782327 - L1PB3 LINE L1 -3 6151 6087 * 1385 146 21 9 chr12 74500150 74500383 -69782106 - L1PB3 LINE L1 -22 6132 5897 254 259 24 0 chr12 74500386 74500471 -69782018 - L1P LINE L1 -987 5159 5073 2837 130 12 0 chr12 74500497 74500921 -69781568 - MER57B LTR ERV1 -5 429 1 1467 104 126 9 chr12 74500921 74501151 -69781338 - MER57B-int LTR ERV1 0 7537 7281 718 125 23 31 chr12 74501153 74501281 -69781208 - LTR54B LTR ERV1 -367 131 5 3336 115 8 10 chr12 74501282 74501768 -69780721 - MER57B-int LTR ERV1 -389 7148 6664 1774 123 20 0 chr12 74501767 74502060 -69780429 - MER57-int LTR ERV1 -3325 4212 3914 * 3097 122 26 24 chr12 74502058 74502790 -69779699 - MER57-int LTR ERV1 -2787 3159 2167 2664 149 37 16 chr12 74502786 74503464 -69779025 - MER57-int LTR ERV1 -3929 3584 1586 * 3561 145 61 0 chr12 74503485 74504043 -69778446 - MER57-int LTR ERV1 -5067 879 288 909 166 80 0 chr12 74504040 74504215 -69778274 - MER57-int LTR ERV1 -6865 672 484 * 633 356 106 0 chr12 74504496 74504788 -69777701 - L3 LINE CR1 -623 954 632 312 238 46 93 chr12 74504861 74505012 -69777477 - MIR SINE MIR -15 247 104 24 32 0 0 chr12 74505042 74505073 -69777416 + AT_rich Low_complexity Low_complexity 1 31 0 2149 103 0 10 chr12 74505701 74506003 -69776486 + AluSc SINE Alu 1 299 -10 483 338 15 68 chr12 74507045 74507311 -69775178 - L2 LINE L2 0 3272 3021 184 326 206 35 chr12 74507377 74507518 -69774971 - L2 LINE L2 -1 3271 3107 1798 177 0 7 chr12 74508832 74509142 -69773347 + AluJb SINE Alu 3 310 -2 22 35 0 0 chr12 74509338 74509367 -69773122 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 74510419 74510443 -69772046 + AT_rich Low_complexity Low_complexity 1 24 0 425 223 90 20 chr12 74514412 74514515 -69767974 - L1ME3 LINE L1 -1 6169 6049 718 212 0 8 chr12 74514515 74514647 -69767842 + FLAM_A SINE Alu 1 131 -2 425 223 90 20 chr12 74514647 74514699 -69767790 - L1ME3 LINE L1 -121 6049 6002 616 206 0 91 chr12 74514774 74514939 -69767550 - MER63 DNA MER1_type -281 781 6 40543 35 22 2 chr12 74514981 74521010 -69761479 - L1PA2 LINE L1 0 6155 2 1539 227 58 24 chr12 74521001 74521406 -69761083 - L1ME3 LINE L1 -174 5996 5572 * 2305 86 3 3 chr12 74521406 74521708 -69760781 - AluY SINE Alu -9 302 1 1539 227 58 24 chr12 74521708 74521765 -69760724 - L1ME3 LINE L1 -598 5572 5518 748 191 21 26 chr12 74521907 74522101 -69760388 + AluY SINE Alu 1 193 -118 228 172 0 0 chr12 74522107 74522165 -69760324 + G-rich Low_complexity Low_complexity 1 58 0 2679 52 0 0 chr12 74522951 74523295 -69759194 + L1PA5 LINE L1 5604 5947 -207 2259 167 107 3 chr12 74523313 74525181 -69757308 + SATR1 Satellite Satellite 1 2062 0 2120 161 105 6 chr12 74525203 74526349 -69756140 + SATR1 Satellite Satellite 1 1260 -27 1405 179 66 50 chr12 74526795 74526909 -69755580 + AluJo SINE Alu 1 112 -200 180 77 0 0 chr12 74526909 74526935 -69755554 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 1405 179 66 50 chr12 74526935 74527122 -69755367 + AluJo SINE Alu 112 307 -5 1077 69 0 0 chr12 74527122 74527253 -69755236 + AluSq/x SINE Alu 3 133 -179 1860 132 54 0 chr12 74528382 74528677 -69753812 + AluSq SINE Alu 1 311 -2 262 270 16 0 chr12 74530034 74530097 -69752392 + CT-rich Low_complexity Low_complexity 3 66 0 21 0 0 0 chr12 74530684 74530705 -69751784 + AT_rich Low_complexity Low_complexity 1 21 0 1052 175 86 123 chr12 74530912 74531317 -69751172 + MLT1B LTR MaLR 1 390 0 195 336 53 18 chr12 74531329 74531442 -69751047 + MIR SINE MIR 74 190 -72 1695 153 11 14 chr12 74531468 74531743 -69750746 + AluSx SINE Alu 24 297 -15 265 351 36 0 chr12 74531805 74531916 -69750573 - L3 LINE CR1 -124 1453 1339 2028 150 193 7 chr12 74532103 74532529 -69749960 - LTR27 LTR ERV1 -130 506 2 606 186 34 45 chr12 74533736 74533913 -69748576 - MER104 DNA Tc2 -5 175 1 380 295 60 12 chr12 74533916 74534082 -69748407 + L2 LINE L2 3113 3286 -27 1989 202 218 93 chr12 74534818 74535699 -69746790 + LTR28 LTR ERV1 30 1020 0 284 295 57 19 chr12 74537199 74537304 -69745185 - L2 LINE L2 -33 3280 3172 1142 306 44 26 chr12 74537397 74537940 -69744549 - MLT1K LTR MaLR -26 562 10 334 108 0 46 chr12 74538075 74538140 -69744349 - MLT1J2 LTR MaLR -332 118 57 182 261 22 65 chr12 74538210 74538302 -69744187 - L2 LINE L2 -213 3059 2972 306 354 0 0 chr12 74538787 74538883 -69743606 - L2 LINE L2 -18 3295 3200 202 61 41 61 chr12 74539436 74539485 -69743004 + (CCCCCA)n Simple_repeat Simple_repeat 3 50 0 749 273 92 76 chr12 74540553 74540934 -69741555 - L2 LINE L2 0 3272 2886 1073 326 48 10 chr12 74540939 74541353 -69741136 + L2 LINE L2 2226 2655 -659 247 293 236 17 chr12 74541321 74541495 -69740994 + L2 LINE L2 3099 3310 -3 * 440 342 10 36 chr12 74541500 74541517 -69740972 - L2 LINE L2 -424 2890 2874 2404 161 46 2 chr12 74541517 74541927 -69740562 + MSTA LTR MaLR 1 428 0 440 342 10 36 chr12 74541927 74542105 -69740384 - L2 LINE L2 -440 2874 2700 21 82 0 0 chr12 74542315 74542364 -69740125 + AT_rich Low_complexity Low_complexity 1 49 0 329 200 24 0 chr12 74542655 74542740 -69739749 + MER103 DNA DNA 59 145 -21 2602 118 33 19 chr12 74542769 74543191 -69739298 - MSTA LTR MaLR 0 428 1 340 221 31 25 chr12 74543325 74543488 -69739001 + (TGGG)n Simple_repeat Simple_repeat 3 166 0 * 397 177 10 73 chr12 74543452 74543644 -69738845 + G-rich Low_complexity Low_complexity 1 180 0 * 424 196 28 28 chr12 74543504 74543683 -69738806 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 25 105 0 0 chr12 74544372 74544467 -69738022 + AT_rich Low_complexity Low_complexity 1 95 0 26 30 0 0 chr12 74544985 74545018 -69737471 + AT_rich Low_complexity Low_complexity 1 33 0 190 297 40 27 chr12 74545395 74545469 -69737020 + L2 LINE L2 2924 2998 -274 186 189 0 0 chr12 74545951 74545988 -69736501 + (CA)n Simple_repeat Simple_repeat 2 38 0 838 271 126 53 chr12 74546292 74546705 -69735784 - MLT1E LTR MaLR -10 614 172 495 243 18 0 chr12 74546759 74546870 -69735619 - MLT1E LTR MaLR -534 120 8 246 235 0 0 chr12 74548488 74548539 -69733950 + (TATG)n Simple_repeat Simple_repeat 3 53 0 2831 0 0 0 chr12 74548814 74549117 -69733372 - AluYa5 SINE Alu -8 303 1 213 178 0 0 chr12 74549574 74549619 -69732870 + (TA)n Simple_repeat Simple_repeat 2 46 0 853 259 58 37 chr12 74549702 74550027 -69732462 - LTR16C LTR ERVL 0 491 160 283 384 9 0 chr12 74552612 74552724 -69729765 - MIR3 SINE MIR -9 199 87 223 312 12 12 chr12 74553109 74553210 -69729279 - MIR SINE MIR -62 146 50 357 256 23 0 chr12 74553666 74553752 -69728737 - MIR3 SINE MIR -36 172 85 21 0 0 0 chr12 74554078 74554099 -69728390 + AT_rich Low_complexity Low_complexity 1 21 0 1045 284 37 36 chr12 74554585 74555330 -69727159 - L1ME3A LINE L1 -268 5902 5164 939 260 80 63 chr12 74555338 74556174 -69726315 + L1M4 LINE L1 3628 4477 -1669 306 243 14 0 chr12 74556825 74556895 -69725594 - MIR SINE MIR -3 259 189 430 298 0 118 chr12 74556967 74557145 -69725344 + MIR SINE MIR 1 157 -105 1240 290 127 15 chr12 74557156 74557691 -69724798 + MLT1G1 LTR MaLR 1 595 0 831 271 90 24 chr12 74557693 74558001 -69724488 - MLT1G1 LTR MaLR -273 300 7 193 188 174 43 chr12 74558013 74558082 -69724407 + MIR SINE MIR 185 262 0 277 361 18 6 chr12 74558585 74558754 -69723735 - L1MC/D LINE L1 -2204 5604 5434 923 92 0 0 chr12 74559637 74559768 -69722721 - AluY SINE Alu 0 311 181 251 248 88 15 chr12 74559770 74559907 -69722582 - L1MC/D LINE L1 -1469 4677 4531 219 261 0 15 chr12 74560941 74561006 -69721483 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 970 120 23 17 chr12 74561664 74561839 -69720650 + L1MA4 LINE L1 6125 6300 0 21 36 0 0 chr12 74561839 74561867 -69720622 + AT_rich Low_complexity Low_complexity 1 28 0 209 218 140 26 chr12 74563648 74563762 -69718727 - MIR SINE MIR -25 183 52 1442 129 26 0 chr12 74564389 74564621 -69717868 - L1PA10 LINE L1 -5 6163 5926 1838 75 43 0 chr12 74564621 74564899 -69717590 + L1PA10 LINE L1 5637 5926 -242 30 27 0 0 chr12 74566031 74566068 -69716421 + AT_rich Low_complexity Low_complexity 1 37 0 1832 139 43 0 chr12 74566143 74566423 -69716066 - AluSx SINE Alu -18 294 3 246 330 0 0 chr12 74567974 74568083 -69714406 + C-rich Low_complexity Low_complexity 1 109 0 654 139 0 43 chr12 74568084 74568271 -69714218 + (C)n Simple_repeat Simple_repeat 1 179 0 464 326 42 10 chr12 74568583 74568776 -69713713 + L2 LINE L2 2477 2675 -639 598 329 135 4 chr12 74569027 74569264 -69713225 + L2 LINE L2 3001 3268 -4 272 26 0 26 chr12 74569971 74570009 -69712480 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2008 134 0 0 chr12 74570011 74570294 -69712195 - AluSx SINE Alu -29 283 1 1887 127 9 94 chr12 74570974 74571314 -69711175 - AluSq SINE Alu -2 311 1 850 217 103 0 chr12 74571314 74571588 -69710901 - MER33 DNA MER1_type -31 293 1 30 27 0 0 chr12 74572526 74572563 -69709926 + AT_rich Low_complexity Low_complexity 1 37 0 581 321 50 33 chr12 74572703 74572867 -69709622 - MLT1J LTR MaLR -5 506 333 1436 313 66 31 chr12 74572867 74573537 -69708952 + MER115 DNA AcHobo 1 693 0 581 321 50 33 chr12 74573537 74573671 -69708818 - MLT1J LTR MaLR -178 333 203 275 233 87 39 chr12 74573706 74573809 -69708680 - MLT1J LTR MaLR -395 116 9 1846 141 10 3 chr12 74575134 74575424 -69707065 - AluJb SINE Alu -6 306 15 233 247 47 12 chr12 74575496 74575581 -69706908 - MLT1J LTR MaLR -45 466 379 371 274 11 0 chr12 74575758 74575853 -69706636 - MLT1J LTR MaLR -332 179 84 225 0 0 0 chr12 74576939 74576964 -69705525 + (TG)n Simple_repeat Simple_repeat 2 26 0 482 302 84 19 chr12 74577244 74577459 -69705030 - MIR SINE MIR -29 233 5 1279 215 15 4 chr12 74578112 74578382 -69704107 - MLT1E1 LTR MaLR 0 654 382 387 263 61 34 chr12 74578382 74578634 -69703855 + L1MA10 LINE L1 5927 6333 -1 2278 69 0 57 chr12 74578922 74579240 -69703249 + AluY SINE Alu 1 300 -11 1179 129 106 0 chr12 74579533 74579750 -69702739 - SATR1 Satellite Satellite -53 417 178 2072 64 0 7 chr12 74579751 74580178 -69702311 - L1P3 LINE L1 -633 5521 5097 593 113 84 56 chr12 74580865 74581007 -69701482 - LTR45B LTR ERV1 -1 488 343 223 250 0 13 chr12 74581567 74581664 -69700825 + CT-rich Low_complexity Low_complexity 1 95 0 2610 229 38 50 chr12 74581783 74582646 -69699843 + MER45R DNA AcHobo 16 868 -713 257 75 75 0 chr12 74582653 74582693 -69699796 + T-rich Low_complexity Low_complexity 1 43 0 606 119 45 0 chr12 74582693 74582827 -69699662 + CT-rich Low_complexity Low_complexity 2 141 0 1131 119 0 0 chr12 74582841 74583017 -69699472 + (TC)n Simple_repeat Simple_repeat 2 177 0 1524 238 0 7 chr12 74583017 74583316 -69699173 - AluJb SINE Alu -15 297 1 2857 153 46 39 chr12 74583316 74584017 -69698472 + MER45R DNA AcHobo 867 1572 -9 196 352 0 0 chr12 74584606 74584677 -69697812 - L2 LINE L2 -481 2833 2763 1572 78 0 0 chr12 74585671 74585876 -69696613 - L1PA7 LINE L1 -8 6146 5942 311 233 10 0 chr12 74586436 74586539 -69695950 + (TA)n Simple_repeat Simple_repeat 1 104 0 2304 99 7 0 chr12 74587146 74587440 -69695049 + AluSg SINE Alu 1 296 -14 180 244 0 22 chr12 74587526 74587571 -69694918 - MIR SINE MIR -129 79 36 1331 312 56 26 chr12 74587908 74588575 -69693914 + L2 LINE L2 2194 2954 -359 253 306 129 42 chr12 74588896 74589089 -69693400 + LTR16B LTR ERVL 107 316 -148 498 337 72 27 chr12 74589170 74589544 -69692945 - L2 LINE L2 -31 3282 2892 280 348 0 0 chr12 74589557 74589646 -69692843 - MIR SINE MIR -20 242 154 530 272 144 60 chr12 74589646 74590110 -69692379 - LTR33 LTR ERVL 0 521 19 280 143 0 0 chr12 74590122 74590164 -69692325 - MIR SINE MIR -104 158 117 605 212 0 48 chr12 74590164 74590329 -69692160 + MER104 DNA Tc2 6 162 -18 218 57 57 0 chr12 74590471 74590506 -69691983 + CT-rich Low_complexity Low_complexity 4 40 0 1936 240 68 23 chr12 74592292 74592809 -69689680 - MLT1F LTR MaLR -2 540 1 736 305 159 11 chr12 74592911 74593281 -69689208 - L2 LINE L2 -4 3309 2885 1991 130 9 43 chr12 74593699 74594046 -69688443 - MER1B DNA MER1_type -1 336 2 212 221 25 49 chr12 74594351 74594514 -69687975 + (TGGG)n Simple_repeat Simple_repeat 4 162 0 253 93 23 78 chr12 74594517 74594646 -69687843 + (TGGGGG)n Simple_repeat Simple_repeat 2 123 0 2365 166 105 18 chr12 74594707 74597229 -69685260 + SATR1 Satellite Satellite 1 2743 0 2048 180 98 9 chr12 74597258 74598873 -69683616 - SATR1 Satellite Satellite -51 1759 1 21 36 0 0 chr12 74599444 74599472 -69683017 + AT_rich Low_complexity Low_complexity 1 28 0 392 292 57 42 chr12 74599714 74599906 -69682583 + MIR3 SINE MIR 42 236 -26 1248 286 117 46 chr12 74600571 74601196 -69681293 + MER115 DNA AcHobo 25 693 0 1920 163 7 3 chr12 74602389 74602684 -69679805 + AluSx SINE Alu 3 298 -14 212 330 43 26 chr12 74602883 74602998 -69679491 - MIR SINE MIR -72 190 74 4686 94 8 14 chr12 74603062 74603730 -69678759 + MER4A LTR ERV1 1 664 0 853 274 65 0 chr12 74603895 74604110 -69678379 + MIR SINE MIR 28 256 -6 257 311 84 17 chr12 74604119 74604238 -69678251 - MIR SINE MIR -64 198 72 2209 134 19 16 chr12 74604606 74604980 -69677509 + THE1C LTR MaLR 1 375 0 220 322 70 48 chr12 74605154 74605299 -69677190 - MIR SINE MIR -63 145 3 843 145 8 0 chr12 74606898 74607022 -69675467 + MER5A DNA MER1_type 2 126 -63 432 192 0 0 chr12 74607405 74607478 -69675011 + MER5A DNA MER1_type 117 189 0 458 293 63 6 chr12 74607493 74607667 -69674822 + MLT1J2 LTR MaLR 267 450 0 381 232 32 48 chr12 74608336 74608461 -69674028 + MLT1K LTR MaLR 438 560 -28 210 238 0 0 chr12 74611520 74611562 -69670927 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 879 272 83 10 chr12 74611662 74611974 -69670515 - L1MEc LINE L1 -6054 342 8 644 204 33 0 chr12 74611951 74612103 -69670386 - L1M4 LINE L1 -853 5362 5206 * 28 0 0 0 chr12 74613810 74613838 -69668651 + AT_rich Low_complexity Low_complexity 1 28 0 1994 72 4 38 chr12 74613928 74614193 -69668296 + AluY SINE Alu 40 295 -16 22 0 0 0 chr12 74614193 74614215 -69668274 + AT_rich Low_complexity Low_complexity 1 22 0 871 269 59 15 chr12 74615451 74615488 -69667001 + MER46C DNA MER2_type 1 35 -303 1665 147 0 98 chr12 74615488 74615834 -69666655 + AluJo SINE Alu 1 312 0 871 269 59 15 chr12 74615834 74616120 -69666369 + MER46C DNA MER2_type 35 338 0 230 322 0 0 chr12 74616584 74616643 -69665846 - 7SK RNA RNA -9 184 126 213 213 0 0 chr12 74617203 74617250 -69665239 + (TCTG)n Simple_repeat Simple_repeat 1 47 0 459 253 103 61 chr12 74618124 74618385 -69664104 - MER102b DNA MER1_type 0 341 70 222 250 0 0 chr12 74619119 74619167 -69663322 + (TA)n Simple_repeat Simple_repeat 2 49 0 474 317 25 15 chr12 74619324 74619523 -69662966 + L2 LINE L2 2495 2695 -619 181 374 136 7 chr12 74619537 74619692 -69662797 + L2 LINE L2 2799 2973 -341 345 93 0 0 chr12 74619799 74619853 -69662636 + (T)n Simple_repeat Simple_repeat 1 54 0 297 258 0 65 chr12 74620204 74620359 -69662130 + C-rich Low_complexity Low_complexity 3 147 0 333 0 0 0 chr12 74620977 74621014 -69661475 + (T)n Simple_repeat Simple_repeat 1 37 0 2376 74 3 3 chr12 74621053 74621351 -69661138 + AluY SINE Alu 1 298 -13 326 238 25 25 chr12 74621357 74621437 -69661052 + L2 LINE L2 3219 3298 -15 1192 219 18 21 chr12 74621526 74621809 -69660680 - MLT1C LTR MaLR 0 467 186 284 345 10 35 chr12 74621819 74622019 -69660470 + L1M2a LINE L1 775 969 -6199 3542 192 29 61 chr12 74622024 74622894 -69659595 + L1MA9 LINE L1 5433 6274 -38 843 185 27 16 chr12 74622915 74623099 -69659390 - MLT1C LTR MaLR -281 186 1 1171 230 37 20 chr12 74623301 74623597 -69658892 - MLT1A2 LTR MaLR 0 374 74 239 200 0 0 chr12 74624809 74624859 -69657630 + L1MC4 LINE L1 6660 6709 -1333 1554 87 0 50 chr12 74626006 74626225 -69656264 - AluSx SINE Alu -104 208 1 340 372 79 42 chr12 74626838 74627241 -69655248 + L2 LINE L2 2838 3255 -17 4499 48 2 19 chr12 74627963 74628544 -69653945 + L1PA5 LINE L1 5584 6154 0 537 209 92 12 chr12 74628826 74628989 -69653500 - MIR SINE MIR 0 262 87 208 190 17 17 chr12 74630299 74630357 -69652132 + A-rich Low_complexity Low_complexity 6 63 0 196 235 12 118 chr12 74630563 74630648 -69651841 - L2 LINE L2 -34 3238 3163 * 379 238 42 84 chr12 74630629 74630772 -69651717 - MIR SINE MIR -113 149 13 214 310 169 21 chr12 74631440 74631582 -69650907 + MIR SINE MIR 37 199 -63 261 0 0 0 chr12 74633083 74633112 -69649377 + (TG)n Simple_repeat Simple_repeat 2 30 0 467 336 112 16 chr12 74633852 74634164 -69648325 - L3 LINE CR1 -115 1462 1121 406 287 40 88 chr12 74634258 74634509 -69647980 + MIR SINE MIR 10 248 -14 226 262 16 0 chr12 74634702 74634763 -69647726 + L2 LINE L2 3210 3271 -1 188 318 12 71 chr12 74635526 74635611 -69646878 + MIR SINE MIR 105 184 -78 14001 176 30 24 chr12 74635986 74636474 -69646015 - L1MA4 LINE L1 -299 6703 6219 781 191 8 0 chr12 74636474 74636605 -69645884 + FLAM_C SINE Alu 1 132 -1 14001 176 30 24 chr12 74636605 74640255 -69642234 - L1MA4 LINE L1 -783 6219 2531 1207 199 6 109 chr12 74640446 74640827 -69641662 + AluJo SINE Alu 3 302 0 237 355 64 0 chr12 74640938 74641048 -69641441 + L2 LINE L2 3182 3298 -15 401 311 56 31 chr12 74642778 74642939 -69639550 + MIR SINE MIR 50 214 -48 23 86 0 0 chr12 74643546 74643604 -69638885 + AT_rich Low_complexity Low_complexity 1 58 0 1096 135 110 0 chr12 74644125 74644325 -69638164 + L1MA9 LINE L1 6091 6312 0 231 307 40 13 chr12 74644906 74644981 -69637508 - L2 LINE L2 0 3272 3196 30 27 0 0 chr12 74645422 74645459 -69637030 + AT_rich Low_complexity Low_complexity 1 37 0 4606 127 4 27 chr12 74645511 74646277 -69636212 + L1PB3 LINE L1 5407 6154 0 24 0 0 0 chr12 74646282 74646306 -69636183 + AT_rich Low_complexity Low_complexity 1 24 0 205 183 100 67 chr12 74646395 74646455 -69636034 - L2 LINE L2 -23 3290 3229 1593 206 60 48 chr12 74698188 74698687 -69583802 + MLT1D LTR MaLR 1 505 0 207 0 0 0 chr12 74699376 74699399 -69583090 + (CA)n Simple_repeat Simple_repeat 2 24 0 403 288 84 40 chr12 74699634 74699860 -69582629 - MLT1J LTR MaLR -275 236 1 2572 184 71 2 chr12 74700704 74701208 -69581281 + MER21B LTR ERV1 1 539 -324 280 260 0 14 chr12 74701192 74701265 -69581224 + MER21B LTR ERV1 739 810 -53 * 193 388 20 10 chr12 74701390 74701488 -69581001 - MIR3 SINE MIR -12 196 98 371 279 81 97 chr12 74701912 74702214 -69580275 - L2 LINE L2 -207 3065 2767 207 360 158 14 chr12 74702452 74702730 -69579759 - L2 LINE L2 -447 2867 2550 25 0 0 0 chr12 74703552 74703577 -69578912 + AT_rich Low_complexity Low_complexity 1 25 0 309 286 128 27 chr12 74703618 74703790 -69578699 - MIR SINE MIR -63 145 7 275 301 27 0 chr12 74704024 74704097 -69578392 - L2 LINE L2 -8 3305 3231 2146 123 32 115 chr12 74705553 74706015 -69576474 + MSTB LTR MaLR 3 426 0 411 237 45 58 chr12 74706297 74706453 -69576036 + Charlie8 DNA MER1_type 67 220 -2197 627 247 60 6 chr12 74707552 74707734 -69574755 + MIR SINE MIR 41 232 -30 391 284 23 0 chr12 74707755 74707843 -69574646 - L2 LINE L2 -36 3277 3188 366 277 94 85 chr12 74708192 74708499 -69573990 + MLT1I LTR MaLR 100 409 0 249 386 38 8 chr12 74708661 74708793 -69573696 + MIR SINE MIR 19 154 -108 270 0 0 0 chr12 74709433 74709463 -69573026 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 203 88 29 0 chr12 74709464 74709498 -69572991 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 420 164 172 43 chr12 74709498 74709614 -69572875 - L2 LINE L2 -1 3312 3182 319 243 0 27 chr12 74709744 74709818 -69572671 + L2 LINE L2 3201 3272 0 644 170 126 7 chr12 74710552 74710687 -69571802 + MLT1A1 LTR MaLR 1 151 -214 2209 108 7 13 chr12 74710692 74710999 -69571490 + AluSx SINE Alu 1 305 -7 1076 176 0 0 chr12 74710999 74711175 -69571314 + AluSg/x SINE Alu 137 312 0 1105 213 5 5 chr12 74711183 74711404 -69571085 + MLT1A1 LTR MaLR 144 364 -1 1053 287 93 18 chr12 74711419 74711957 -69570532 - L2 LINE L2 -19 3294 2713 194 229 0 16 chr12 74712556 74712617 -69569872 + CT-rich Low_complexity Low_complexity 4 63 0 296 274 80 53 chr12 74712883 74712996 -69569493 - L2 LINE L2 -19 3253 3138 505 246 77 73 chr12 74713285 74713401 -69569088 + MIR SINE MIR 2 116 -146 2306 89 16 3 chr12 74713401 74713705 -69568784 - AluSg SINE Alu -2 308 1 505 246 77 73 chr12 74713705 74713848 -69568641 + MIR SINE MIR 116 262 0 257 363 50 0 chr12 74714404 74714484 -69568005 - L2 LINE L2 -15 3257 3174 185 0 40 0 chr12 74715154 74715179 -69567310 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 513 0 0 0 chr12 74715552 74715609 -69566880 + (TG)n Simple_repeat Simple_repeat 2 58 0 199 93 47 0 chr12 74715610 74715653 -69566836 + GA-rich Low_complexity Low_complexity 2 46 0 26 0 0 0 chr12 74716259 74716285 -69566204 + AT_rich Low_complexity Low_complexity 1 26 0 221 369 15 0 chr12 74716572 74716637 -69565852 + L2 LINE L2 3205 3270 -2 2352 65 0 10 chr12 74716754 74717044 -69565445 + AluY SINE Alu 1 287 -24 225 65 0 0 chr12 74717044 74717075 -69565414 + (CATA)n Simple_repeat Simple_repeat 2 32 0 326 300 22 0 chr12 74717079 74717169 -69565320 + L2 LINE L2 2842 2933 -381 2316 105 0 7 chr12 74717193 74717498 -69564991 + AluSg SINE Alu 1 303 -7 1776 205 45 51 chr12 74717662 74718079 -69564410 - MER31B LTR ERV1 -1 465 50 2384 78 0 13 chr12 74718079 74718388 -69564101 + AluY SINE Alu 1 305 -6 1776 205 45 51 chr12 74718388 74718438 -69564051 - MER31B LTR ERV1 -416 50 1 1935 145 54 0 chr12 74719377 74719673 -69562816 - AluSx SINE Alu 0 312 1 26 88 0 0 chr12 74719904 74719972 -69562517 + AT_rich Low_complexity Low_complexity 1 68 0 2168 102 0 72 chr12 74720447 74720779 -69561710 - AluSg SINE Alu -2 308 1 800 240 19 0 chr12 74721206 74721414 -69561075 - L1MC4 LINE L1 -152 7890 7679 25 0 0 0 chr12 74721908 74721933 -69560556 + AT_rich Low_complexity Low_complexity 1 25 0 229 204 108 65 chr12 74722027 74722213 -69560276 - Charlie7 DNA MER1_type -2 2610 2417 * 280 218 51 0 chr12 74722188 74722266 -69560223 - Charlie7 DNA MER1_type -2511 101 20 1725 227 38 42 chr12 74723245 74723974 -69558515 - L1MEc LINE L1 -4893 1322 622 394 240 58 0 chr12 74724528 74724632 -69557857 + MER58 DNA MER1_type 2306 2415 -5 1284 217 118 49 chr12 74724662 74725169 -69557320 - L1MEc LINE L1 -5796 600 59 441 268 59 46 chr12 74726865 74727070 -69555419 + MIR SINE MIR 41 251 -11 399 202 86 9 chr12 74729112 74729250 -69553239 + L1MA8 LINE L1 5986 6137 -154 336 280 105 58 chr12 74729263 74729649 -69552840 - MLT1J LTR MaLR -13 602 100 203 335 62 57 chr12 74729813 74729989 -69552500 - L2 LINE L2 -238 3034 2858 4833 123 189 23 chr12 74730091 74731124 -69551365 - MER11B LTR ERVK 0 1236 33 477 174 85 9 chr12 74731216 74731354 -69551135 + L1MA8 LINE L1 5986 6137 -154 355 265 127 82 chr12 74731367 74731745 -69550744 - MLT1J LTR MaLR -13 602 108 201 318 62 57 chr12 74731920 74732096 -69550393 - L2 LINE L2 -238 3034 2858 822 250 82 0 chr12 74732835 74733019 -69549470 + MIR SINE MIR 5 203 -59 231 243 29 0 chr12 74733022 74733092 -69549397 + L1ME LINE L1 5527 5598 -523 1152 183 3 88 chr12 74733095 74733379 -69549110 + AluJo SINE Alu 46 305 -7 189 107 0 0 chr12 74733380 74733408 -69549081 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 246 301 97 11 chr12 74733966 74734059 -69548430 + MIR SINE MIR 7 107 -155 1714 159 0 33 chr12 74734161 74734437 -69548052 - AluJb SINE Alu -45 267 1 351 0 0 0 chr12 74734532 74734571 -69547918 + (CA)n Simple_repeat Simple_repeat 2 40 0 361 205 13 0 chr12 74734571 74734649 -69547840 - MER96 DNA MER1_type? -2 173 95 257 250 138 0 chr12 74734686 74734766 -69547723 - MER96 DNA MER1_type? -78 97 7 264 309 0 12 chr12 74734778 74734859 -69547630 + (CA)n Simple_repeat Simple_repeat 2 81 0 241 307 60 53 chr12 74735975 74736125 -69546364 + MIR3 SINE MIR 19 169 -39 27 62 0 0 chr12 74736497 74736545 -69545944 + AT_rich Low_complexity Low_complexity 1 48 0 1896 195 23 101 chr12 74736874 74736934 -69545555 - MLT2B1 LTR ERVL 0 520 457 233 0 0 59 chr12 74736934 74736968 -69545521 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 1896 195 23 101 chr12 74736968 74737471 -69545018 - MLT2B1 LTR ERVL -63 457 1 21 57 0 0 chr12 74737659 74737694 -69544795 + AT_rich Low_complexity Low_complexity 1 35 0 476 227 56 91 chr12 74737758 74737797 -69544692 + MIR SINE MIR 72 111 -151 2297 110 0 0 chr12 74737797 74738098 -69544391 - AluSq SINE Alu -12 301 1 476 227 56 91 chr12 74738098 74738256 -69544233 + MIR SINE MIR 111 262 0 2784 298 89 35 chr12 74739747 74741461 -69541028 - L2 LINE L2 0 3313 1480 294 239 174 0 chr12 74741441 74741533 -69540956 + L2 LINE L2 3164 3271 -1 * 2058 108 36 0 chr12 74741686 74741963 -69540526 - AluSg SINE Alu -23 287 1 2306 116 0 0 chr12 74742487 74742797 -69539692 + AluSx SINE Alu 1 310 -2 201 311 8 76 chr12 74743418 74743550 -69538939 - L2 LINE L2 -209 3104 2982 8042 114 18 31 chr12 74744697 74746014 -69536475 - HSMAR2 DNA Mariner -1 1301 2 664 294 60 0 chr12 74746453 74746688 -69535801 - MIR SINE MIR -10 252 4 1508 253 146 100 chr12 74747047 74747838 -69534651 - L2 LINE L2 0 3313 2560 599 157 0 0 chr12 74747838 74747946 -69534543 - AluSg/x SINE Alu 0 312 205 1508 253 146 100 chr12 74747946 74748670 -69533819 - L2 LINE L2 -753 2560 1604 431 262 83 18 chr12 74748723 74748891 -69533598 - L1ME LINE L1 -374 5747 5569 689 24 0 0 chr12 74749439 74749524 -69532965 - L1PA4 LINE L1 -3 6152 6068 225 306 56 0 chr12 74750660 74750732 -69531757 - L2 LINE L2 -9 3304 3229 270 188 16 0 chr12 74754062 74754126 -69528363 + MER52A LTR ERV1 1 65 -1690 2838 185 65 146 chr12 74754345 74755617 -69526872 + MER52A LTR ERV1 46 511 -125 344 138 15 0 chr12 74755591 74755656 -69526833 + MER52A LTR ERV1 1684 1749 -6 * 281 284 126 60 chr12 74755663 74755846 -69526643 - MIR SINE MIR -67 195 1 4770 30 3 0 chr12 74755862 74756429 -69526060 - L1PA5 LINE L1 -2 6152 5584 242 319 60 18 chr12 74757256 74757422 -69525067 + L2 LINE L2 1884 2056 -1258 240 167 42 0 chr12 74758066 74758138 -69524351 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 2316 96 0 0 chr12 74758420 74758712 -69523777 + AluSc SINE Alu 1 292 -17 1024 283 126 15 chr12 74758987 74759517 -69522972 - L2 LINE L2 -1 3312 2712 2173 104 3 13 chr12 74759562 74759869 -69522620 + AluSq SINE Alu 1 304 -9 1066 226 70 70 chr12 74760328 74760788 -69521701 + HAL1b LINE L1 300 759 -589 640 251 85 38 chr12 74760823 74761034 -69521455 - MLT1J2 LTR MaLR -41 409 189 357 209 59 18 chr12 74761124 74761286 -69521203 + HAL1b LINE L1 756 2313 -194 356 229 69 127 chr12 74761420 74761839 -69520650 + L1ME4a LINE L1 5715 6109 -12 309 373 103 37 chr12 74762086 74762657 -69519832 - L2 LINE L2 -400 2914 2306 188 174 0 109 chr12 74763965 74764011 -69518478 + L2 LINE L2 3261 3301 -12 1724 180 14 60 chr12 74765410 74765826 -69516663 + MLT1C LTR MaLR 23 419 -48 21 71 0 0 chr12 74765826 74765868 -69516621 + AT_rich Low_complexity Low_complexity 1 42 0 2196 147 40 8 chr12 74767154 74767528 -69514961 - L1PA16 LINE L1 -11 6155 5770 42161 40 2 1 chr12 74767546 74773689 -69508800 - L1PA3 LINE L1 -4 6151 2 740 276 51 0 chr12 74774128 74774324 -69508165 + MER58A DNA MER1_type 16 221 -3 2160 92 3 14 chr12 74775287 74775581 -69506908 + AluSq SINE Alu 10 300 -13 276 244 26 9 chr12 74775606 74775721 -69506768 + (TA)n Simple_repeat Simple_repeat 2 118 0 430 324 90 16 chr12 74775867 74776111 -69506378 + MIR SINE MIR 1 262 0 240 35 0 0 chr12 74776396 74776425 -69506064 + (TG)n Simple_repeat Simple_repeat 2 30 0 258 343 157 0 chr12 74777924 74778064 -69504425 - MIR3 SINE MIR -3 205 44 752 168 0 0 chr12 74778064 74778183 -69504306 - FLAM_C SINE Alu -9 134 16 407 219 37 0 chr12 74778300 74778382 -69504107 + AluSg/x SINE Alu 138 222 -88 183 222 0 0 chr12 74778404 74778440 -69504049 + MIR SINE MIR 83 118 -90 228 242 45 0 chr12 74778440 74778506 -69503983 + MIR SINE MIR 80 148 -114 204 358 77 77 chr12 74778640 74778989 -69503500 + L2 LINE L2 2611 2959 -355 1736 71 5 0 chr12 74779003 74779215 -69503274 - AluY SINE Alu -3 308 96 187 320 93 31 chr12 74779357 74779454 -69503035 + L2 LINE L2 3150 3252 -20 1649 172 0 4 chr12 74779475 74779737 -69502752 + AluJo SINE Alu 2 262 -50 198 0 0 0 chr12 74779755 74779777 -69502712 + (CAA)n Simple_repeat Simple_repeat 3 24 0 30 0 0 0 chr12 74783632 74783662 -69498827 + AT_rich Low_complexity Low_complexity 1 30 0 326 329 59 12 chr12 74786450 74786620 -69495869 - L2 LINE L2 0 3313 3136 1695 164 93 29 chr12 74786620 74787029 -69495460 + L1MC2 LINE L1 5902 6336 -8 557 295 49 54 chr12 74787204 74787574 -69494915 - L2 LINE L2 -570 2744 2377 1447 189 26 42 chr12 74787671 74787983 -69494506 + AluJo SINE Alu 1 307 -5 321 295 0 114 chr12 74789319 74789485 -69493004 - MIR SINE MIR -110 152 6 233 29 0 29 chr12 74789508 74789543 -69492946 + (TTG)n Simple_repeat Simple_repeat 2 35 0 586 184 68 133 chr12 74790550 74790784 -69491705 - MER20 DNA MER1_type 0 219 1 495 198 0 0 chr12 74791915 74792006 -69490483 + FRAM SINE Alu 74 164 -12 1590 143 143 0 chr12 74793449 74793707 -69488782 + AluSx SINE Alu 1 295 -17 491 279 54 7 chr12 74794492 74794639 -69487850 + MIR3 SINE MIR 32 185 -23 356 267 87 31 chr12 74794717 74794878 -69487611 + MER97c DNA MER1_type? 1 170 -920 242 333 219 24 chr12 74795171 74796292 -69486197 + L2 LINE L2 1536 2874 -440 182 333 78 50 chr12 74797489 74797630 -69484859 + L2 LINE L2 3128 3272 0 26 0 0 0 chr12 74797851 74797877 -69484612 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr12 74798107 74798132 -69484357 + AT_rich Low_complexity Low_complexity 1 25 0 1235 144 0 0 chr12 74798236 74798410 -69484079 + AluJb SINE Alu 133 306 -6 186 200 44 0 chr12 74799224 74799269 -69483220 + L2 LINE L2 3267 3313 0 215 316 20 51 chr12 74799347 74799445 -69483044 + MIR SINE MIR 47 141 -121 1773 148 11 18 chr12 74800964 74801241 -69481248 + AluJb SINE Alu 11 285 -27 441 0 0 0 chr12 74801241 74801290 -69481199 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 205 189 180 139 chr12 74801321 74801376 -69481113 - MIR3 SINE MIR -54 154 103 1299 243 21 49 chr12 74801376 74801842 -69480647 - LTR16A1 LTR ERVL -1 456 4 205 189 180 139 chr12 74801842 74801908 -69480581 - MIR3 SINE MIR -105 103 28 372 214 129 80 chr12 74802116 74802317 -69480172 - MIR SINE MIR -40 222 12 434 295 86 14 chr12 74802930 74803140 -69479349 - MIR SINE MIR -34 228 4 2785 85 0 6 chr12 74803179 74803542 -69478947 + THE1B LTR MaLR 1 361 -3 189 74 0 0 chr12 74804092 74804119 -69478370 + (TTTCC)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr12 74805023 74805046 -69477443 + AT_rich Low_complexity Low_complexity 1 23 0 414 172 0 0 chr12 74805275 74805374 -69477115 + T-rich Low_complexity Low_complexity 1 99 0 244 224 0 0 chr12 74805782 74805831 -69476658 + L2 LINE L2 3257 3305 -8 2243 129 0 0 chr12 74805919 74806222 -69476267 + AluSg SINE Alu 2 304 -6 495 217 32 3 chr12 74807617 74807962 -69474527 + CT-rich Low_complexity Low_complexity 1 355 0 1435 204 38 4 chr12 74807962 74808226 -69474263 - AluJo SINE Alu -39 273 1 2234 110 0 7 chr12 74808239 74808548 -69473941 - AluSx SINE Alu -5 307 1 274 315 27 45 chr12 74808991 74809102 -69473387 + L2 LINE L2 3149 3257 -15 420 20 0 0 chr12 74809411 74809460 -69473029 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 356 294 18 6 chr12 74809475 74809645 -69472844 + (TA)n Simple_repeat Simple_repeat 1 172 0 848 196 0 6 chr12 74810067 74810230 -69472259 + MER46A DNA MER2_type 1 162 -74 305 208 42 0 chr12 74810262 74810334 -69472155 - L1MCa LINE L1 -4354 2072 1998 538 43 0 117 chr12 74810358 74810452 -69472037 - Tigger4(Zombi) DNA MER2_type -8 2723 2641 1953 153 10 13 chr12 74811620 74811920 -69470569 + AluSx SINE Alu 1 299 -13 659 239 77 32 chr12 74811950 74812197 -69470292 - MIR SINE MIR -1 261 4 24 0 0 0 chr12 74813522 74813546 -69468943 + AT_rich Low_complexity Low_complexity 1 24 0 243 236 0 0 chr12 74813658 74813730 -69468759 + (TA)n Simple_repeat Simple_repeat 1 72 0 215 343 0 29 chr12 74813762 74813867 -69468622 + (CAG)n Simple_repeat Simple_repeat 2 103 0 909 204 58 22 chr12 74814020 74814245 -69468244 - MIR SINE MIR -22 240 8 1790 103 114 4 chr12 74817720 74817992 -69464497 + AluSx SINE Alu 1 302 -10 663 279 34 21 chr12 74818064 74818297 -69464192 - MIR SINE MIR -4 258 23 25 31 0 0 chr12 74818933 74818965 -69463524 + AT_rich Low_complexity Low_complexity 1 32 0 2182 112 3 3 chr12 74819938 74820233 -69462256 + AluSg SINE Alu 1 295 -15 1041 134 6 6 chr12 74821644 74821801 -69460688 - FRAM SINE Alu -19 157 1 353 266 13 0 chr12 74821945 74822024 -69460465 + Charlie7 DNA MER1_type 2 81 -2531 295 189 107 25 chr12 74822034 74822156 -69460333 + Charlie7 DNA MER1_type 2440 2571 -41 8282 66 3 10 chr12 74822370 74823448 -69459041 + MER11C LTR ERVK 2 1071 0 1816 156 3 3 chr12 74823509 74823797 -69458692 - AluJb SINE Alu -22 290 3 238 265 78 29 chr12 74823825 74823927 -69458562 + L1MC/D LINE L1 5649 5755 -2053 33 25 0 0 chr12 74824224 74824264 -69458225 + AT_rich Low_complexity Low_complexity 1 40 0 618 230 33 18 chr12 74824449 74824648 -69457841 - MLT2D LTR ERVL -236 178 1 4630 168 21 15 chr12 74824649 74825624 -69456865 + L1MB7 LINE L1 5180 6168 -16 867 78 16 8 chr12 74826874 74827002 -69455487 - L1PA13 LINE L1 -5 6158 6030 26 30 0 0 chr12 74827013 74827046 -69455443 + AT_rich Low_complexity Low_complexity 1 33 0 9200 131 15 39 chr12 74827051 74829542 -69452947 - L1PA13 LINE L1 -111 6052 3635 273 29 0 0 chr12 74829656 74829690 -69452799 + (TG)n Simple_repeat Simple_repeat 2 35 0 606 260 22 35 chr12 74830865 74831092 -69451397 + L1ME4a LINE L1 5657 5880 -241 21 71 0 0 chr12 74831529 74831571 -69450918 + AT_rich Low_complexity Low_complexity 1 42 0 1758 157 14 20 chr12 74834039 74834361 -69448128 - AluJo SINE Alu 0 312 3 1860 177 0 0 chr12 74836512 74836812 -69445677 - AluJb SINE Alu -12 300 1 399 356 158 16 chr12 74837780 74838103 -69444386 - L2 LINE L2 -603 2711 2343 251 353 0 0 chr12 74838405 74838490 -69443999 - MIR SINE MIR -66 142 58 942 199 0 0 chr12 74838892 74839048 -69443441 + FRAM SINE Alu 1 156 -10 1134 38 0 51 chr12 74840270 74840428 -69442061 + L1PA7 LINE L1 5997 6146 -8 3477 192 78 10 chr12 74840651 74841910 -69440579 + L1MB8 LINE L1 4834 6178 0 459 279 84 0 chr12 74841919 74842073 -69440416 - MER5A DNA MER1_type -21 168 2 186 43 0 0 chr12 74842740 74842763 -69439726 + (TC)n Simple_repeat Simple_repeat 2 24 0 27 29 0 0 chr12 74843391 74843425 -69439064 + AT_rich Low_complexity Low_complexity 1 34 0 2824 133 7 4 chr12 74843683 74844140 -69438349 - L1PA16 LINE L1 -6 6160 5703 21 0 0 0 chr12 74844241 74844262 -69438227 + AT_rich Low_complexity Low_complexity 1 21 0 396 347 114 5 chr12 74844372 74844591 -69437898 + MIR SINE MIR 14 256 -6 336 221 44 0 chr12 74844910 74844978 -69437511 + FLAM SINE Alu 63 133 0 1235 137 0 58 chr12 74844988 74845193 -69437296 + AluJb SINE Alu 84 276 -36 553 346 82 55 chr12 74845576 74845940 -69436549 - L2 LINE L2 -65 3207 2834 809 193 48 39 chr12 74846006 74846213 -69436276 - MER3 DNA MER1_type 0 209 1 553 210 32 16 chr12 74846306 74846430 -69436059 - MER103 DNA DNA -29 137 12 677 354 154 15 chr12 74846551 74847495 -69434994 - L2 LINE L2 -557 2757 1683 218 280 172 11 chr12 74847508 74847601 -69434888 - L2 LINE L2 -11 3261 3154 904 300 93 26 chr12 74848242 74848672 -69433817 - MLT1J LTR MaLR -39 472 14 5749 142 44 9 chr12 74849172 74850352 -69432137 - L1MA7 LINE L1 0 6291 5058 368 202 22 45 chr12 74850356 74850445 -69432044 - MER69A DNA AcHobo -44 133 47 28 48 0 0 chr12 74851158 74851200 -69431289 + AT_rich Low_complexity Low_complexity 1 42 0 597 266 58 15 chr12 74851280 74851483 -69431006 + MIR SINE MIR 38 247 -15 2061 217 126 10 chr12 74851553 74852060 -69430429 - MLT1F1 LTR MaLR 0 567 2 21 0 0 0 chr12 74852173 74852194 -69430295 + AT_rich Low_complexity Low_complexity 1 21 0 521 256 61 65 chr12 74852515 74852777 -69429712 + MIR SINE MIR 2 262 0 1550 178 21 35 chr12 74852817 74853139 -69429350 - AluJb SINE Alu 0 318 1 773 211 3 147 chr12 74854663 74855004 -69427485 - L2 LINE L2 -2 3311 3020 348 233 105 8 chr12 74855872 74856005 -69426484 + L1MEd LINE L1 17 162 -5957 719 289 104 44 chr12 74856037 74856160 -69426329 + L1MEd LINE L1 253 367 -5752 2883 0 0 0 chr12 74856160 74856468 -69426021 + AluY SINE Alu 1 308 -3 719 289 104 44 chr12 74856468 74856749 -69425740 + L1MEd LINE L1 367 681 -5438 1852 300 22 35 chr12 74856755 74857496 -69424993 + L1M2a LINE L1 411 1141 -6425 1442 243 8 8 chr12 74857958 74858320 -69424169 + L1M2a LINE L1 2154 2515 -5051 11005 178 71 28 chr12 74858354 74859521 -69422968 + L1M2a LINE L1 3293 4409 -3156 2009 125 0 33 chr12 74859521 74859826 -69422663 + AluSx SINE Alu 1 295 -17 11005 178 71 28 chr12 74859826 74860162 -69422327 + L1M2a LINE L1 4409 4729 -2836 2129 120 0 0 chr12 74860162 74860454 -69422035 + AluSx SINE Alu 1 292 -20 11005 178 71 28 chr12 74860454 74861776 -69420713 + L1M2a LINE L1 4729 6250 -1315 701 169 50 19 chr12 74861776 74861934 -69420555 + L1MA6 LINE L1 6136 6300 0 753 270 95 49 chr12 74861944 74862772 -69419717 + L1MEd LINE L1 674 1628 -862 542 205 98 0 chr12 74913924 74914046 -69368443 + MER94 DNA DNA 1 134 0 267 277 18 54 chr12 74914073 74914185 -69368304 - MIR SINE MIR 0 262 155 452 321 42 24 chr12 74914436 74914639 -69367850 - MIR SINE MIR -56 206 3 2314 93 0 17 chr12 74915053 74915355 -69367134 - AluSx SINE Alu -15 297 1 21 0 0 0 chr12 74916647 74916668 -69365821 + GC_rich Low_complexity Low_complexity 1 21 0 354 245 137 14 chr12 74917102 74917241 -69365248 + MSTA LTR MaLR 273 428 0 2019 132 7 16 chr12 74917305 74917615 -69364874 + THE1B LTR MaLR 56 362 -2 385 181 36 0 chr12 74917615 74917698 -69364791 - L1 LINE L1 -3096 3050 2965 485 223 20 29 chr12 74917825 74917939 -69364550 + MER5A DNA MER1_type 65 188 -1 324 253 84 21 chr12 74917951 74918046 -69364443 + MIR SINE MIR 22 122 -140 230 195 0 0 chr12 74918199 74918240 -69364249 - L2 LINE L2 -95 3177 3137 32 0 0 0 chr12 74918383 74918415 -69364074 + AT_rich Low_complexity Low_complexity 1 32 0 358 373 93 3 chr12 74918863 74919163 -69363326 - L2 LINE L2 -450 2864 2538 205 244 133 22 chr12 74919236 74919326 -69363163 - MIR3 SINE MIR -106 102 3 274 297 14 0 chr12 74919437 74919511 -69362978 + LTR33 LTR ERVL 444 518 -3 280 351 0 0 chr12 74920224 74920301 -69362188 + MIR SINE MIR 13 89 -173 2399 137 20 65 chr12 74920302 74920564 -69361925 + LTR23 LTR ERV1 2 237 -200 2124 171 82 34 chr12 74920564 74921004 -69361485 - LOR1b LTR ERV1 0 461 1 2399 137 20 65 chr12 74921004 74921187 -69361302 + LTR23 LTR ERV1 237 427 -10 2495 186 43 82 chr12 74922377 74922695 -69359794 + LTR49-int LTR ERV1 1557 1837 -4494 1981 114 0 0 chr12 74922695 74922966 -69359523 - AluSc SINE Alu -2 307 37 2495 186 43 82 chr12 74922966 74923318 -69359171 + LTR49-int LTR ERV1 1837 2201 -4130 4143 153 32 4 chr12 74923319 74924011 -69358478 + MER50 LTR ERV1 1 711 -23 1672 247 23 59 chr12 74924012 74924489 -69358000 + LTR49-int LTR ERV1 2199 2658 -3673 2678 148 52 3 chr12 74924507 74925240 -69357249 + L1P4 LINE L1 4917 5670 -496 4106 119 2 7 chr12 74925240 74925796 -69356693 - MER41A LTR ERV1 0 554 2 9649 111 39 11 chr12 74925797 74927998 -69354491 - MER41A-int LTR ERV1 -2 5944 2856 957 157 110 0 chr12 74927985 74928176 -69354313 - MER41A-int LTR ERV1 -3000 2946 2735 * 31392 111 14 64 chr12 74928177 74929167 -69353322 - L1PA7 LINE L1 -1 6153 5115 2330 92 3 16 chr12 74929167 74929482 -69353007 - AluY SINE Alu 0 311 1 31392 111 14 64 chr12 74929482 74929945 -69352544 - L1PA7 LINE L1 -1039 5115 4630 203 79 26 0 chr12 74929945 74929983 -69352506 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 31392 111 14 64 chr12 74929983 74935006 -69347483 - L1PA7 LINE L1 -1524 4630 12 1478 157 16 6 chr12 74935042 74935411 -69347078 - MER41A-int LTR ERV1 -3276 2670 2255 868 180 7 0 chr12 74935410 74935560 -69346929 - MER41A-int LTR ERV1 -4911 2626 2476 * 2395 144 17 36 chr12 74935564 74936125 -69346364 - MER41A-int LTR ERV1 -4383 2052 552 * 3946 145 35 10 chr12 74936120 74936748 -69345741 - MER41A-int LTR ERV1 -5302 644 1 317 130 338 13 chr12 74936757 74936834 -69345655 - MER41A-int LTR ERV1 -5844 102 1 3571 102 44 38 chr12 74936834 74936935 -69345554 - MER41A LTR ERV1 0 554 455 2009 110 4 14 chr12 74936935 74937124 -69345365 - AluSx SINE Alu 0 322 136 2136 123 0 10 chr12 74937124 74937425 -69345064 - AluSg SINE Alu -12 298 1 2009 110 4 14 chr12 74937425 74937555 -69344934 - AluSx SINE Alu -186 136 6 3571 102 44 38 chr12 74937555 74938002 -69344487 - MER41A LTR ERV1 -99 455 1 1330 156 30 10 chr12 74938002 74938200 -69344289 + L1PA16 LINE L1 5667 5860 -306 1330 109 5 16 chr12 74938200 74938392 -69344097 + L1PA16 LINE L1 5968 6157 -9 1330 156 30 10 chr12 74938392 74938431 -69344058 + L1PA16 LINE L1 5860 6157 -9 259 236 0 0 chr12 74938477 74938532 -69343957 + MER34C LTR ERV1 171 225 -360 12984 107 7 7 chr12 74938579 74939201 -69343288 - L1PA8A LINE L1 -28 6418 5798 2377 77 0 0 chr12 74939201 74939499 -69342990 - AluY SINE Alu -13 298 1 12984 107 7 7 chr12 74939499 74941553 -69340936 - L1PA8A LINE L1 -648 5798 3741 6073 129 14 31 chr12 74941563 74942547 -69339942 - L1PA8A LINE L1 -4908 967 1 432 286 76 18 chr12 74942557 74942728 -69339761 + MER34C LTR ERV1 262 442 -143 663 181 96 153 chr12 74942732 74942889 -69339600 + LTR23-int LTR ERV1 1230 1366 -3757 2086 132 6 19 chr12 74942889 74943200 -69339289 + AluSx SINE Alu 1 307 -5 663 181 96 153 chr12 74943200 74943324 -69339165 + LTR23-int LTR ERV1 1366 1495 -3628 1824 181 0 0 chr12 74943334 74943627 -69338862 + AluJb SINE Alu 1 293 -19 2138 91 45 0 chr12 74943628 74943915 -69338574 + AluY SINE Alu 1 300 -11 206 171 0 49 chr12 74943916 74943957 -69338532 + polypurine Low_complexity Low_complexity 1 39 0 1803 209 54 28 chr12 74943961 74944831 -69337658 + LTR23-int LTR ERV1 1486 2973 -1907 422 187 0 0 chr12 74944851 74944926 -69337563 + LTR23-int LTR ERV1 2558 2632 -2491 913 209 125 88 chr12 74945636 74946101 -69336388 + LTR8A LTR ERV1 246 727 0 2526 61 0 7 chr12 74946491 74946801 -69335688 + AluY SINE Alu 2 309 -2 1471 125 46 92 chr12 74947006 74947309 -69335180 + LTR23 LTR ERV1 4 292 -145 918 141 31 12 chr12 74947339 74947502 -69334987 + LTR23 LTR ERV1 272 437 0 218 255 8 31 chr12 74947502 74947590 -69334899 + MIR SINE MIR 86 171 -37 1411 167 296 47 chr12 74947597 74947873 -69334616 + LTR48 LTR ERV1 70 276 -511 2413 89 3 0 chr12 74947873 74948175 -69334314 + AluSx SINE Alu 3 305 -7 1411 167 296 47 chr12 74948175 74948473 -69334016 + LTR48 LTR ERV1 276 787 0 288 277 43 11 chr12 74948473 74948567 -69333922 + MIR SINE MIR 140 236 -26 1031 108 0 36 chr12 74948727 74948894 -69333595 - MER5A DNA MER1_type -20 169 9 287 303 152 52 chr12 74948902 74948996 -69333493 + MIR SINE MIR 9 92 -170 2281 100 0 0 chr12 74948996 74949287 -69333202 - AluY SINE Alu -20 291 1 287 303 152 52 chr12 74949287 74949423 -69333066 + MIR SINE MIR 92 262 0 264 30 0 0 chr12 74949555 74949588 -69332901 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1985 126 0 4 chr12 74949588 74949866 -69332623 - AluSc SINE Alu -32 277 1 333 149 195 0 chr12 74949869 74949956 -69332533 - L1PA13 LINE L1 -1 6164 6061 2433 126 0 37 chr12 74949999 74950349 -69332140 - MER1B DNA MER1_type 0 337 1 1255 147 160 136 chr12 74951115 74951570 -69330919 - MER31B LTR ERV1 0 466 1 531 179 0 0 chr12 74952174 74952252 -69330237 - AluJ/FLAM SINE Alu -228 84 7 185 0 0 39 chr12 74952359 74952385 -69330104 + (TTTTTA)n Simple_repeat Simple_repeat 3 27 0 182 111 0 0 chr12 74952445 74952472 -69330017 + MIR3 SINE MIR 173 199 -9 2199 115 11 0 chr12 74955493 74955780 -69326709 + AluSx SINE Alu 1 290 -22 234 281 0 0 chr12 74956828 74956885 -69325604 + L2 LINE L2 3215 3271 -1 23 0 0 0 chr12 74958677 74958700 -69323789 + AT_rich Low_complexity Low_complexity 1 23 0 486 272 80 19 chr12 74959010 74959172 -69323317 - MIR3 SINE MIR -6 202 31 810 153 23 11 chr12 74959623 74959846 -69322643 + MLT1F1 LTR MaLR 305 567 0 2212 118 3 0 chr12 74960199 74960503 -69321986 - AluSx SINE Alu -3 309 5 1304 155 19 0 chr12 74960509 74960715 -69321774 - AluJo SINE Alu -20 292 83 212 262 0 0 chr12 74961115 74961157 -69321332 + polypyrimidine Low_complexity Low_complexity 1 42 0 1953 112 63 0 chr12 74961157 74961443 -69321046 - AluSq SINE Alu -9 304 1 1801 176 3 26 chr12 74961449 74961761 -69320728 - AluJb SINE Alu -7 305 1 291 236 0 0 chr12 74962160 74962232 -69320257 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 325 303 0 0 chr12 74962232 74962321 -69320168 + L1MC4 LINE L1 6615 6703 -1339 190 286 107 0 chr12 74962340 74962396 -69320093 + L2 LINE L2 3251 3312 -1 463 309 144 0 chr12 74962400 74962594 -69319895 - MIR SINE MIR -34 228 7 297 309 100 0 chr12 74962719 74962829 -69319660 + L2 LINE L2 3145 3265 -7 1574 196 3 20 chr12 74963529 74963830 -69318659 - AluJo SINE Alu -16 296 1 366 65 0 0 chr12 74965279 74965325 -69317164 - MADE1 DNA Mariner -1 79 34 397 129 0 0 chr12 74965341 74965403 -69317086 - MADE1 DNA Mariner -18 62 1 200 328 139 32 chr12 74965573 74965911 -69316578 - L2 LINE L2 -469 2845 2472 372 158 0 79 chr12 74965920 74965996 -69316493 + FLAM_A SINE Alu 64 133 0 439 181 21 43 chr12 74966065 74966159 -69316330 + AluJo SINE Alu 56 147 -165 269 281 227 18 chr12 74966240 74966518 -69315971 - L2 LINE L2 -936 2378 2043 275 258 0 0 chr12 74967019 74967081 -69315408 + L1MC5 LINE L1 7172 7233 -728 816 223 49 88 chr12 74967233 74967678 -69314811 + L1MC5 LINE L1 7315 7742 -219 216 260 19 10 chr12 74967705 74967809 -69314680 + (TA)n Simple_repeat Simple_repeat 2 106 0 234 170 0 38 chr12 74967833 74967886 -69314603 - L1MC4 LINE L1 -1346 6696 6646 * 381 205 45 120 chr12 74967881 74968081 -69314408 + L1MC5 LINE L1 7732 7916 -45 764 181 0 16 chr12 74968083 74968210 -69314279 - FLAM_C SINE Alu -17 126 2 21 0 0 0 chr12 74968377 74968398 -69314091 + AT_rich Low_complexity Low_complexity 1 21 0 326 282 129 12 chr12 74968843 74969013 -69313476 + MIR SINE MIR 61 250 -12 286 149 45 0 chr12 74969932 74969999 -69312490 + CT-rich Low_complexity Low_complexity 2 71 0 1435 163 39 50 chr12 74969999 74970281 -69312208 - AluJo SINE Alu -33 279 1 317 315 41 30 chr12 74970338 74970509 -69311980 - L1MC/D LINE L1 -495 5675 5552 1627 148 48 117 chr12 74970929 74971321 -69311168 + MLT1A1 LTR MaLR 1 365 0 225 0 0 0 chr12 74972566 74972591 -69309898 + (T)n Simple_repeat Simple_repeat 1 25 0 183 303 15 30 chr12 74972656 74972722 -69309767 + L3 LINE CR1 588 652 -925 196 214 82 71 chr12 74972824 74972922 -69309567 - MIR SINE MIR -5 257 159 306 174 35 174 chr12 74974283 74974348 -69308141 + MER5A DNA MER1_type 14 58 -131 2325 77 7 10 chr12 74974348 74974658 -69307831 + AluY SINE Alu 1 309 -2 306 174 35 174 chr12 74974658 74974707 -69307782 + MER5A DNA MER1_type 58 112 -77 480 301 22 7 chr12 74974917 74975053 -69307436 - MIR SINE MIR -94 168 31 321 222 183 46 chr12 74975649 74975802 -69306687 - MIR SINE MIR -66 196 23 336 284 156 0 chr12 74976484 74976625 -69305864 - MIR SINE MIR -51 211 49 5265 138 25 50 chr12 74978791 74979646 -69302843 - L1MB8 LINE L1 -1 6177 5302 2237 116 0 0 chr12 74979646 74979940 -69302549 + AluSg SINE Alu 1 294 -16 5265 138 25 50 chr12 74979940 74979955 -69302534 - L1MB8 LINE L1 -876 5302 5288 2449 68 10 3 chr12 74979955 74980264 -69302225 + AluY SINE Alu 1 311 0 5265 138 25 50 chr12 74980264 74980631 -69301858 - L1MB8 LINE L1 -890 5288 4981 749 280 11 0 chr12 74981161 74981343 -69301146 + MIR SINE MIR 79 262 0 325 286 17 25 chr12 74981449 74981568 -69300921 - L1ME4a LINE L1 -66 6055 5938 825 212 80 31 chr12 74982174 74982400 -69300089 - L2 LINE L2 -4 3309 3073 526 228 143 70 chr12 74982405 74982677 -69299812 - L2 LINE L2 -724 2590 2299 2339 97 0 0 chr12 74983204 74983502 -69298987 + AluSx SINE Alu 1 298 -14 247 335 82 29 chr12 74983647 74983853 -69298636 + L3 LINE CR1 892 1108 -469 666 258 73 79 chr12 74983889 74984245 -69298244 + L3 LINE CR1 1219 1572 -5 1793 158 62 0 chr12 74984823 74985115 -69297374 - AluJb SINE Alu -2 310 1 213 355 65 8 chr12 74985188 74985312 -69297177 - MIR3 SINE MIR -64 144 14 1885 150 0 4 chr12 74985353 74985627 -69296862 + AluSx SINE Alu 1 273 -39 261 0 0 0 chr12 74985627 74985656 -69296833 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 333 0 0 0 chr12 74985655 74985692 -69296797 + (CA)n Simple_repeat Simple_repeat 1 37 0 211 378 118 0 chr12 74985717 74985836 -69296653 + MIR SINE MIR 21 153 -55 260 304 137 48 chr12 74986552 74986720 -69295769 - MIR3 SINE MIR -7 201 19 200 188 0 0 chr12 74987306 74987338 -69295151 + L2 LINE L2 3133 3164 -108 208 342 55 38 chr12 74987566 74987803 -69294686 - L2 LINE L2 -357 2957 2717 287 287 109 0 chr12 74987858 74987959 -69294530 - MIR SINE MIR -123 139 28 2348 111 0 0 chr12 74988197 74988503 -69293986 - AluSx SINE Alu -6 306 1 2424 93 0 0 chr12 74989508 74989810 -69292679 + AluSx SINE Alu 1 302 -10 399 226 0 0 chr12 74992129 74992213 -69290276 + MIR SINE MIR 179 262 0 475 206 156 28 chr12 74993552 74993693 -69288796 + L1MCa LINE L1 170 328 -6098 * 2802 125 69 11 chr12 74993679 74994200 -69288289 + L1MCa LINE L1 1062 1612 -4814 200 268 0 54 chr12 74994200 74994256 -69288233 - L2 LINE L2 -33 3239 3187 367 255 21 0 chr12 74994589 74994683 -69287806 + MLT1J LTR MaLR 416 511 0 228 35 0 0 chr12 74994693 74994722 -69287767 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 265 348 14 28 chr12 74994725 74994866 -69287623 - L3 LINE CR1 -379 1198 1060 217 222 0 56 chr12 74995530 74995602 -69286887 - L3 LINE CR1 -614 963 896 502 346 97 36 chr12 74995930 74996461 -69286028 + L2 LINE L2 2613 3178 -94 2111 117 9 22 chr12 74997127 74997443 -69285046 - AluSq SINE Alu -1 312 1 393 238 0 2 chr12 74997707 74997795 -69284694 - MIR SINE MIR -63 145 69 316 260 199 43 chr12 74998994 74999275 -69283214 + L2 LINE L2 2983 3307 -6 1751 139 0 48 chr12 74999296 74999590 -69282899 + AluJo SINE Alu 1 280 -32 1219 290 73 63 chr12 75000714 75001538 -69280951 + L2 LINE L2 2022 2837 -476 2190 111 3 26 chr12 75001538 75001845 -69280644 + AluSx SINE Alu 1 300 -12 1219 290 73 63 chr12 75001845 75001858 -69280631 + L2 LINE L2 2837 2848 -465 1791 171 0 3 chr12 75001858 75002190 -69280299 + AluJb SINE Alu 1 331 0 1219 290 73 63 chr12 75002190 75002428 -69280061 + L2 LINE L2 2848 3309 -4 240 381 86 43 chr12 75002684 75002962 -69279527 + L2 LINE L2 2919 3208 -64 2678 161 60 19 chr12 75003031 75003514 -69278975 + MLT1D LTR MaLR 1 503 -2 485 314 190 42 chr12 75004510 75005132 -69277357 + L2 LINE L2 2136 2849 -465 872 152 8 0 chr12 75005157 75005289 -69277200 - FLAM_C SINE Alu -10 133 1 355 284 161 56 chr12 75005318 75005603 -69276886 + L2 LINE L2 2896 3210 -62 2397 82 3 0 chr12 75005604 75005896 -69276593 - AluY SINE Alu -18 293 1 262 382 8 8 chr12 75006063 75006194 -69276295 + MIR SINE MIR 10 140 -122 258 32 0 0 chr12 75006388 75006419 -69276070 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1911 145 0 7 chr12 75006421 75006703 -69275786 - AluJb SINE Alu -32 280 1 22 0 0 0 chr12 75006709 75006731 -69275758 + AT_rich Low_complexity Low_complexity 1 22 0 596 286 12 79 chr12 75007481 75007633 -69274856 + MIR SINE MIR 37 169 -93 1623 148 4 22 chr12 75007633 75007911 -69274578 - AluJb SINE Alu -3 309 37 596 286 12 79 chr12 75007911 75007999 -69274490 + MIR SINE MIR 169 261 -1 516 231 53 83 chr12 75009724 75009785 -69272704 + L1ME LINE L1 5277 5338 -828 2152 133 0 19 chr12 75009785 75010102 -69272387 + AluSx SINE Alu 1 311 -1 516 231 53 83 chr12 75010102 75010293 -69272196 + L1ME LINE L1 5338 5520 -646 209 161 0 0 chr12 75010299 75010330 -69272159 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr12 75010333 75010361 -69272128 + AT_rich Low_complexity Low_complexity 1 28 0 2093 100 4 4 chr12 75010795 75011075 -69271414 - AluSg SINE Alu -1 309 30 302 382 44 0 chr12 75012485 75012621 -69269868 + MIR3 SINE MIR 56 197 -11 258 263 0 0 chr12 75012829 75012886 -69269603 - L2 LINE L2 -2 3270 3214 658 251 36 58 chr12 75013240 75013463 -69269026 + MIR SINE MIR 33 250 -12 229 167 0 0 chr12 75014663 75014699 -69267790 - L2 LINE L2 -13 3259 3224 198 271 42 0 chr12 75014943 75014991 -69267498 + L3 LINE CR1 1505 1554 -23 266 155 35 0 chr12 75015179 75015237 -69267252 + CT-rich Low_complexity Low_complexity 2 61 0 215 70 0 47 chr12 75015923 75015966 -69266523 + (TAAAAA)n Simple_repeat Simple_repeat 5 45 0 730 157 85 7 chr12 75016086 75016239 -69266250 + MLT1J2 LTR MaLR 1 165 -285 326 234 16 0 chr12 75016563 75016627 -69265862 - MIR3 SINE MIR -129 79 15 2394 89 0 0 chr12 75016717 75017019 -69265470 + AluSc SINE Alu 1 302 -7 23 0 0 0 chr12 75017270 75017293 -69265196 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr12 75017368 75017399 -69265090 + AT_rich Low_complexity Low_complexity 1 31 0 2361 70 7 0 chr12 75017837 75018135 -69264354 + AluSp SINE Alu 1 300 -13 39 0 0 0 chr12 75019098 75019137 -69263352 + AT_rich Low_complexity Low_complexity 1 39 0 476 363 30 8 chr12 75019138 75019375 -69263114 - MIR SINE MIR -1 261 20 1693 210 73 10 chr12 75019624 75020120 -69262369 + L1ME LINE L1 4637 5163 -983 1259 200 6 60 chr12 75020146 75020496 -69261993 + L1ME LINE L1 5297 5627 -539 982 284 111 56 chr12 75020545 75022100 -69260389 + L1MEd LINE L1 2 1673 -4637 2022 150 3 0 chr12 75022258 75022558 -69259931 - AluSg SINE Alu -9 301 1 462 214 89 9 chr12 75022572 75022684 -69259805 + L2 LINE L2 1379 1499 -1815 1845 101 62 93 chr12 75022687 75022937 -69259552 + THE1C LTR MaLR 1 257 -118 180 0 0 0 chr12 75022937 75022957 -69259532 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 5481 60 0 1 chr12 75022957 75023646 -69258843 - L1PA5 LINE L1 -11 6143 5456 1845 101 62 93 chr12 75023646 75023781 -69258708 + THE1C LTR MaLR 255 375 0 1216 186 21 25 chr12 75023806 75024086 -69258403 + L2 LINE L2 1522 1800 -1514 273 248 20 0 chr12 75024098 75024199 -69258290 + L1MEd LINE L1 3075 3177 -2952 2062 139 20 0 chr12 75025135 75025436 -69257053 + AluSx SINE Alu 1 307 -5 2282 123 3 0 chr12 75025668 75025978 -69256511 + AluSq SINE Alu 1 311 -2 2002 147 0 28 chr12 75025987 75026307 -69256182 + AluSx SINE Alu 1 311 -1 240 270 111 48 chr12 75026718 75026844 -69255645 + MIR SINE MIR 1 134 -128 221 322 38 94 chr12 75027920 75028187 -69254302 + L2 LINE L2 2726 2977 -337 1761 152 47 20 chr12 75028256 75028552 -69253937 - AluJo SINE Alu -8 304 1 815 268 72 4 chr12 75028636 75028871 -69253618 + MIR SINE MIR 12 262 0 868 215 28 23 chr12 75028944 75029158 -69253331 - MER58C DNA MER1_type 0 215 1 386 319 36 27 chr12 75030083 75030269 -69252220 + MIR3 SINE MIR 5 193 -15 2422 105 0 0 chr12 75030547 75030860 -69251629 + AluSq SINE Alu 1 313 0 418 252 135 0 chr12 75031159 75031270 -69251219 + L2 LINE L2 3187 3312 -1 3077 40 0 3 chr12 75032394 75032764 -69249725 + L1PA7 LINE L1 5772 6140 -14 215 318 131 9 chr12 75033077 75033184 -69249305 - MIR3 SINE MIR -24 184 65 870 269 43 23 chr12 75034214 75034471 -69248018 + MIR SINE MIR 1 262 0 549 333 69 0 chr12 75034515 75034689 -69247800 + MIR SINE MIR 2 187 -75 21 0 0 0 chr12 75034875 75034896 -69247593 + AT_rich Low_complexity Low_complexity 1 21 0 204 204 37 0 chr12 75035300 75035354 -69247135 + (TA)n Simple_repeat Simple_repeat 2 57 0 885 233 0 0 chr12 75035932 75036091 -69246398 + FAM SINE Alu 1 159 -16 192 331 155 7 chr12 75036348 75036490 -69245999 - MIR3 SINE MIR -27 181 19 1871 146 7 17 chr12 75036812 75036970 -69245519 - AluJb SINE Alu -21 291 136 2375 96 0 0 chr12 75036970 75037273 -69245216 - AluSg SINE Alu -7 303 1 1871 146 7 17 chr12 75037273 75037408 -69245081 - AluJb SINE Alu -176 136 1 2285 77 3 43 chr12 75037879 75038202 -69244287 - AluY SINE Alu -1 310 1 730 209 91 13 chr12 75038641 75038871 -69243618 + L1MC5 LINE L1 7642 7889 -72 290 343 35 28 chr12 75039620 75039763 -69242726 + MIR SINE MIR 12 155 -107 * 632 284 125 0 chr12 75039755 75039987 -69242502 - MIR SINE MIR 0 262 2 1462 164 0 13 chr12 75040136 75040374 -69242115 + AluJb SINE Alu 72 306 -6 328 310 39 39 chr12 75040519 75040674 -69241815 - MER5A DNA MER1_type 0 189 35 1970 159 45 13 chr12 75040726 75041104 -69241385 + MLT1B LTR MaLR 1 390 0 220 268 24 12 chr12 75041446 75041528 -69240961 + (TCCA)n Simple_repeat Simple_repeat 3 85 0 214 388 15 0 chr12 75041529 75041596 -69240893 - L2 LINE L2 0 3313 3246 426 331 141 26 chr12 75041658 75041963 -69240526 - MER102b DNA MER1_type -1 340 1 24 53 0 0 chr12 75042930 75042968 -69239521 + AT_rich Low_complexity Low_complexity 1 38 0 1936 109 35 51 chr12 75043645 75043958 -69238531 - AluSg SINE Alu -2 308 1 213 253 13 27 chr12 75044402 75044477 -69238012 + MIR SINE MIR 168 241 -21 261 196 20 0 chr12 75044494 75044545 -69237944 - MIR3 SINE MIR -52 156 105 309 259 89 154 chr12 75046029 75046534 -69235955 + L1M2 LINE L1 587 1058 -5791 2029 119 0 37 chr12 75047389 75047705 -69234784 - AluSx SINE Alu 0 305 1 1886 162 0 3 chr12 75048811 75049101 -69233388 + AluJb SINE Alu 1 289 -23 241 306 0 0 chr12 75049444 75049506 -69232983 - L2 LINE L2 -5 3267 3206 284 360 130 23 chr12 75049539 75049886 -69232603 + L2 LINE L2 2922 3305 -8 325 228 34 67 chr12 75050013 75050162 -69232327 + GA-rich Low_complexity Low_complexity 3 146 0 656 225 66 53 chr12 75050177 75050328 -69232161 + MER5A DNA MER1_type 1 153 -36 26 0 0 0 chr12 75050438 75050464 -69232025 + AT_rich Low_complexity Low_complexity 1 26 0 491 114 0 0 chr12 75050604 75050683 -69231806 + AluS SINE Alu 232 310 -2 273 222 93 19 chr12 75051100 75051208 -69231281 + MIR SINE MIR 137 252 -10 328 232 65 77 chr12 75052036 75052204 -69230285 - L1MC4a LINE L1 -109 7699 7534 886 137 0 22 chr12 75052211 75052350 -69230139 - FLAM_C SINE Alu -7 136 1 464 250 20 26 chr12 75052352 75052504 -69229985 - L1MC4 LINE L1 -418 7624 7474 455 270 28 39 chr12 75052574 75052752 -69229737 - MER5B DNA MER1_type 0 178 3 1169 225 13 4 chr12 75052967 75053203 -69229286 + MER8 DNA MER2_type 1 238 -1 1798 160 0 34 chr12 75054194 75054516 -69227973 - AluJb SINE Alu 0 312 1 286 259 0 0 chr12 75054683 75054741 -69227748 - MER5A DNA MER1_type -80 109 52 246 277 0 48 chr12 75055131 75055214 -69227275 - MIR SINE MIR -6 256 178 378 0 0 0 chr12 75055505 75055547 -69226942 + (TG)n Simple_repeat Simple_repeat 2 43 0 226 333 95 0 chr12 75055554 75055638 -69226851 + MIR SINE MIR 59 150 -112 414 134 0 0 chr12 75055641 75055708 -69226781 + (ATG)n Simple_repeat Simple_repeat 2 68 0 1056 238 42 30 chr12 75055710 75056065 -69226424 + MLT1H LTR MaLR 1 322 -220 1374 210 48 0 chr12 75057032 75057341 -69225148 + L1PB4 LINE L1 5799 6122 -34 500 313 7 7 chr12 75060540 75060687 -69221802 - MER5A DNA MER1_type 0 189 43 23 33 0 0 chr12 75061320 75061350 -69221139 + AT_rich Low_complexity Low_complexity 1 30 0 665 197 0 7 chr12 75061570 75061722 -69220767 + (TCTA)n Simple_repeat Simple_repeat 2 152 0 1934 139 42 3 chr12 75061722 75062052 -69220437 - MER2 DNA MER2_type -1 343 1 731 197 87 45 chr12 75062628 75062892 -69219597 - ORSL DNA AcHobo 0 275 1 853 154 0 0 chr12 75064024 75064154 -69218335 - FLAM_C SINE Alu -3 130 1 9742 68 25 8 chr12 75064493 75066182 -69216307 + L1P LINE L1 2746 4454 -1692 537 254 54 39 chr12 75066668 75066873 -69215616 - MIR SINE MIR 0 262 55 623 340 37 3 chr12 75067095 75067395 -69215094 - MER93a LTR ERV1 -19 383 74 721 179 133 0 chr12 75067421 75067572 -69214917 + AluJb SINE Alu 142 312 0 1590 159 0 121 chr12 75067861 75068201 -69214288 + AluJb SINE Alu 2 300 -2 996 142 18 106 chr12 75068248 75068466 -69214023 - AluJo SINE Alu -113 199 1 894 306 91 65 chr12 75068835 75069541 -69212948 + L3 LINE CR1 634 1357 -220 1416 195 37 30 chr12 75070865 75071162 -69211327 + AluJb SINE Alu 1 299 -13 520 294 71 16 chr12 75071607 75071791 -69210698 - MIR SINE MIR -65 197 4 182 351 0 0 chr12 75071817 75071874 -69210615 - L2 LINE L2 -15 3257 3201 207 0 0 0 chr12 75075721 75075744 -69206745 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 227 280 65 43 chr12 75075911 75076004 -69206485 - L2 LINE L2 -1 3271 3177 241 341 91 11 chr12 75076554 75076642 -69205847 - MIR SINE MIR -98 110 16 1031 79 0 0 chr12 75076745 75076884 -69205605 + L1PA10 LINE L1 6030 6168 0 990 182 6 6 chr12 75077860 75078036 -69204453 - FRAM SINE Alu 0 176 1 254 220 20 0 chr12 75078355 75078405 -69204084 - L2 LINE L2 -16 3297 3247 342 251 135 55 chr12 75078437 75078600 -69203889 - MER5B DNA MER1_type -1 177 2 7128 53 0 0 chr12 75078739 75079975 -69202514 - L1PA6 LINE L1 0 6154 4917 1483 247 23 59 chr12 75079993 75080470 -69202019 - LTR49-int LTR ERV1 -3673 2658 2199 3818 153 32 4 chr12 75080476 75081163 -69201326 - MER50 LTR ERV1 -28 706 1 2224 192 40 79 chr12 75081164 75081516 -69200973 - LTR49-int LTR ERV1 -4130 2201 1886 1987 114 0 0 chr12 75081516 75081787 -69200702 + AluSc SINE Alu 37 307 -2 2224 192 40 79 chr12 75081787 75082105 -69200384 - LTR49-int LTR ERV1 -4445 1886 1557 2205 134 20 65 chr12 75083295 75083478 -69199011 - LTR23 LTR ERV1 -10 427 237 1945 166 82 34 chr12 75083478 75083918 -69198571 + LOR1b LTR ERV1 1 461 0 2205 134 20 65 chr12 75083918 75084180 -69198309 - LTR23 LTR ERV1 -200 237 2 288 351 0 0 chr12 75084181 75084258 -69198231 - MIR SINE MIR -173 89 13 258 278 14 0 chr12 75084972 75085044 -69197445 - LTR33 LTR ERVL -3 518 446 204 244 133 22 chr12 75085157 75085247 -69197242 + MIR3 SINE MIR 3 102 -106 352 378 94 3 chr12 75085322 75085621 -69196868 + L2 LINE L2 2538 2863 -451 31 0 0 0 chr12 75086070 75086101 -69196388 + AT_rich Low_complexity Low_complexity 1 31 0 230 313 133 8 chr12 75086157 75086285 -69196204 + L2 LINE L2 3034 3177 -95 329 306 74 0 chr12 75086438 75086545 -69195944 - MIR SINE MIR -140 122 8 494 223 20 29 chr12 75086545 75086659 -69195830 - MER5A DNA MER1_type -1 188 65 348 190 13 0 chr12 75086790 75086869 -69195620 + L1 LINE L1 2971 3050 -3096 1881 132 7 16 chr12 75086869 75087179 -69195310 - THE1B LTR MaLR -2 362 56 8806 213 20 7 chr12 75087202 75087244 -69195245 + L1P LINE L1 3058 3098 -3048 1823 158 137 18 chr12 75087244 75087625 -69194864 - MSTA LTR MaLR 0 428 3 8806 213 20 7 chr12 75087625 75089777 -69192712 + L1P LINE L1 3098 5279 -867 706 147 154 0 chr12 75089777 75089913 -69192576 - MSTA LTR MaLR 0 428 272 1882 128 54 30 chr12 75089913 75090248 -69192241 - MER61A LTR ERV1 0 343 1 4198 115 35 11 chr12 75090248 75091247 -69191242 - MER61A-int LTR ERV1 0 5217 4150 6770 56 3 1 chr12 75091247 75092761 -69189728 - L1PA5 LINE L1 0 6154 4637 * 17975 38 5 3 chr12 75092760 75095104 -69187385 + L1PA5 LINE L1 2282 4631 -1515 16691 95 31 10 chr12 75095104 75097796 -69184693 - MER61A-int LTR ERV1 -1062 4949 1320 2037 76 8 0 chr12 75097799 75098063 -69184426 + AluSp SINE Alu 1 266 -47 2585 186 63 45 chr12 75098136 75098830 -69183659 - MER61A-int LTR ERV1 -4510 707 1 1666 165 54 24 chr12 75098830 75099163 -69183326 - MER61A LTR ERV1 0 343 1 198 222 0 95 chr12 75099260 75099323 -69183166 - L3 LINE CR1 -214 1363 1307 2754 157 11 4 chr12 75099326 75099790 -69182699 + MLT1C LTR MaLR 1 467 0 223 170 21 0 chr12 75099866 75099913 -69182576 - MIR SINE MIR -79 183 136 584 201 6 83 chr12 75099927 75100096 -69182393 + MLT1D LTR MaLR 1 156 -349 4386 106 32 79 chr12 75100106 75100212 -69182277 + MER34-int LTR ERV1 5474 5583 -748 1789 162 3 34 chr12 75100212 75100533 -69181956 + AluJb SINE Alu 1 311 -1 4386 106 32 79 chr12 75100533 75100553 -69181936 + MER34-int LTR ERV1 5583 5602 -729 2175 148 58 58 chr12 75100553 75101039 -69181450 - LTR19A LTR ERV1 0 486 1 4386 106 32 79 chr12 75101039 75101788 -69180701 + MER34-int LTR ERV1 5602 6309 -22 240 178 41 41 chr12 75101813 75101886 -69180603 + MER34 LTR ERV1 1 73 -469 2060 185 21 29 chr12 75101914 75102390 -69180099 + LTR29 LTR ERV1 137 608 -14 887 160 63 52 chr12 75102399 75102622 -69179867 + MLT1D LTR MaLR 153 480 -135 2491 158 43 0 chr12 75102622 75103064 -69179425 + LOR1b LTR ERV1 1 461 0 1741 180 31 11 chr12 75103072 75103428 -69179061 + LOR1b-int LTR ERV1 9 371 -7749 2149 122 86 0 chr12 75103444 75103806 -69178683 + LTR29-int LTR ERV1 203 595 -7525 9334 104 30 22 chr12 75103812 75105400 -69177089 + LOR1b-int LTR ERV1 3586 5186 -2934 1898 143 148 13 chr12 75105400 75105777 -69176712 - MSTA LTR MaLR 0 428 1 2300 120 0 88 chr12 75105784 75106217 -69176272 - MSTA-int LTR MaLR -8 1643 1249 1873 99 62 6 chr12 75106217 75106261 -69176228 + LOR1b-int LTR ERV1 5182 5222 -2898 180 0 0 0 chr12 75106261 75106281 -69176208 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1873 99 62 6 chr12 75106281 75106294 -69176195 + LOR1b-int LTR ERV1 5222 5233 -2887 2416 100 0 0 chr12 75106294 75106604 -69175885 + AluY SINE Alu 1 310 -1 1873 99 62 6 chr12 75106604 75106868 -69175621 + LOR1b-int LTR ERV1 5233 5522 -2598 1483 90 9 5 chr12 75106860 75107083 -69175406 + LOR1b-int LTR ERV1 5801 6024 -2096 * 624 121 0 0 chr12 75107087 75107178 -69175311 + LOR1b-int LTR ERV1 8030 8120 0 2347 166 33 11 chr12 75107178 75107629 -69174860 + LOR1b LTR ERV1 1 461 0 823 117 8 0 chr12 75107629 75107757 -69174732 + MLT1D LTR MaLR 377 505 0 541 293 7 14 chr12 75107757 75107897 -69174592 - MIR SINE MIR -117 145 7 486 224 88 20 chr12 75107902 75108049 -69174440 - L3 LINE CR1 -277 1300 1144 240 100 0 0 chr12 75108700 75108740 -69173749 + L1PA15 LINE L1 6125 6164 -1 22 0 0 0 chr12 75108808 75108830 -69173659 + AT_rich Low_complexity Low_complexity 1 22 0 1575 228 0 7 chr12 75108901 75109225 -69173264 - AluJb SINE Alu 0 312 1 1836 161 3 34 chr12 75109253 75109575 -69172914 - AluJo SINE Alu 0 312 1 1570 226 16 0 chr12 75109583 75109950 -69172539 - MER63B DNA MER1_type -60 376 4 10026 92 2 1 chr12 75110373 75112669 -69169820 + L1PA8 LINE L1 3880 6178 0 2497 71 0 0 chr12 75112861 75113171 -69169318 - AluY SINE Alu -1 310 1 1844 168 3 7 chr12 75113484 75113782 -69168707 - AluSx SINE Alu -15 297 1 233 230 0 81 chr12 75113800 75113874 -69168615 - MIR SINE MIR -4 258 191 602 178 72 16 chr12 75114024 75114184 -69168305 - MER110 LTR ERV1 0 468 327 2239 123 0 0 chr12 75114187 75114497 -69167992 - AluSx SINE Alu 0 312 3 270 327 68 64 chr12 75114583 75114803 -69167686 - MER89-int LTR ERV1 -2828 1819 1599 1613 180 35 0 chr12 75115026 75115287 -69167202 + AluJb SINE Alu 22 291 -21 2128 130 163 0 chr12 75115388 75115756 -69166733 - MSTA LTR MaLR 0 428 1 6606 188 36 17 chr12 75115756 75117011 -69165478 - MSTA-int LTR MaLR 0 1651 373 473 310 75 71 chr12 75118245 75119045 -69163444 + HERVK14C LTR ERVK 1068 1870 -4967 1166 268 63 51 chr12 75119506 75120078 -69162411 + HERVK14C LTR ERVK 2652 3093 -2852 253 243 14 0 chr12 75120292 75120362 -69162127 + HERVK14C LTR ERVK 3136 3206 -2710 448 273 55 41 chr12 75121435 75121821 -69160668 + HERVK14C LTR ERVK 4830 5218 -2025 2607 103 8 5 chr12 75122220 75122599 -69159890 - MSTA-int LTR MaLR -1198 382 3 2350 131 129 8 chr12 75122601 75122982 -69159507 - MSTA LTR MaLR 0 428 2 291 335 57 41 chr12 75122983 75123177 -69159312 - MER89-int LTR ERV1 -3204 3597 3401 729 157 17 0 chr12 75123215 75123330 -69159159 + U4 snRNA snRNA 23 139 -6 527 334 43 31 chr12 75123383 75123765 -69158724 - MER89-int LTR ERV1 -3452 3349 829 797 183 37 37 chr12 75123799 75123963 -69158526 - FAM SINE Alu -3 46 1 535 298 111 60 chr12 75124277 75124545 -69157944 - MER89-int LTR ERV1 -4197 450 158 2396 85 0 13 chr12 75124545 75124862 -69157627 - AluSp SINE Alu 0 313 1 535 298 111 60 chr12 75124862 75124945 -69157544 - MER89-int LTR ERV1 -4489 158 81 635 206 16 98 chr12 75125012 75125206 -69157283 + MER34B LTR ERV1 7 184 -381 417 231 174 40 chr12 75125192 75125439 -69157050 + MER34B LTR ERV1 286 565 0 * 2543 68 0 0 chr12 75125803 75126111 -69156378 + AluY SINE Alu 1 308 -3 2204 97 10 0 chr12 75126329 75126627 -69155862 - AluSp SINE Alu -10 303 3 497 148 16 107 chr12 75127096 75127218 -69155271 + MLT1F1 LTR MaLR 443 553 -14 211 296 84 66 chr12 75127754 75128089 -69154400 - L2 LINE L2 -57 3256 2916 387 169 0 0 chr12 75130041 75130112 -69152377 + (CAT)n Simple_repeat Simple_repeat 1 71 0 662 267 74 25 chr12 75130117 75130319 -69152170 - MIR SINE MIR -30 232 21 210 182 55 0 chr12 75130733 75130788 -69151701 + (TTAAA)n Simple_repeat Simple_repeat 5 62 0 205 180 33 16 chr12 75131148 75131209 -69151280 + (TAA)n Simple_repeat Simple_repeat 2 63 0 231 184 51 82 chr12 75131230 75131328 -69151161 + MLT1J LTR MaLR 404 498 -13 1815 202 42 24 chr12 75131350 75131732 -69150757 + MLT1B LTR MaLR 1 389 -1 1939 137 34 3 chr12 75132127 75132420 -69150069 + AluSx SINE Alu 1 302 -10 1538 185 82 20 chr12 75132774 75133126 -69149363 - LTR52 LTR ERVL -47 374 1 725 260 151 33 chr12 75133456 75133869 -69148620 + MLT1J LTR MaLR 24 425 -21 1105 168 0 22 chr12 75134538 75134717 -69147772 + FAM SINE Alu 1 175 0 2185 90 7 3 chr12 75134804 75135094 -69147395 + AluY SINE Alu 21 311 0 2506 65 0 3 chr12 75137421 75137728 -69144761 - AluY SINE Alu -5 306 1 373 131 38 38 chr12 75138746 75138819 -69143670 + L1MB3 LINE L1 6069 6145 -36 1602 132 99 7 chr12 75138819 75139091 -69143398 + AluJo SINE Alu 1 297 -15 373 131 38 38 chr12 75139091 75139105 -69143384 + L1MB3 LINE L1 6144 6157 -24 402 279 123 29 chr12 75140284 75140488 -69142001 - MIR SINE MIR 0 262 40 399 280 27 47 chr12 75140546 75140696 -69141793 + MER5A DNA MER1_type 43 189 0 2442 81 0 3 chr12 75140793 75141100 -69141389 - AluSg SINE Alu -4 306 1 870 141 0 8 chr12 75141128 75141256 -69141233 - FLAM_C SINE Alu -16 127 1 2356 92 0 7 chr12 75141652 75141958 -69140531 - AluY SINE Alu -7 304 1 2132 128 0 0 chr12 75142348 75142645 -69139844 - AluSq SINE Alu -16 297 1 619 53 0 0 chr12 75142654 75142730 -69139759 - Alu SINE Alu -12 297 222 233 256 0 70 chr12 75142798 75142884 -69139605 + MER34B LTR ERV1 36 115 -450 357 229 62 64 chr12 75142997 75143243 -69139246 + MER34 LTR ERV1 394 534 -8 1695 163 16 35 chr12 75143338 75143651 -69138838 + AluJo SINE Alu 1 307 -5 2308 81 0 0 chr12 75145232 75145538 -69136951 + AluY SINE Alu 1 306 0 1515 150 112 24 chr12 75145618 75145905 -69136584 - AluJo SINE Alu 0 312 1 1729 81 42 11 chr12 75146034 75146294 -69136195 - AluY SINE Alu -42 269 2 2066 181 115 40 chr12 75146386 75146856 -69135633 - MLT1D LTR MaLR 0 505 1 186 200 47 118 chr12 75149204 75149289 -69133200 + L2 LINE L2 3188 3266 -6 221 299 192 34 chr12 75149792 75149969 -69132520 - L3b LINE CR1 -96 1487 1283 21 0 0 0 chr12 75150179 75150200 -69132289 + AT_rich Low_complexity Low_complexity 1 21 0 651 276 70 0 chr12 75150756 75150955 -69131534 + MLT1I LTR MaLR 197 409 0 280 273 86 39 chr12 75151147 75151275 -69131214 + L2 LINE L2 3169 3302 -11 234 178 0 0 chr12 75151665 75151710 -69130779 + L1MB5 LINE L1 6084 6128 -46 829 267 49 9 chr12 75151792 75152017 -69130472 + MIR SINE MIR 28 261 -1 1084 265 55 57 chr12 75152027 75152502 -69129987 + L3 LINE CR1 588 1061 -516 239 313 226 0 chr12 75152582 75152697 -69129792 + MIR SINE MIR 25 165 -97 741 218 9 62 chr12 75152747 75152826 -69129663 - L1MB4 LINE L1 -55 6125 6043 2406 87 0 0 chr12 75152826 75153115 -69129374 - AluSg SINE Alu -21 289 1 741 218 9 62 chr12 75153115 75153246 -69129243 - L1MB4 LINE L1 -137 6043 5926 191 380 77 20 chr12 75153248 75153443 -69129046 + L3 LINE CR1 1371 1576 -1 226 226 53 60 chr12 75153483 75153613 -69128876 - MIR SINE MIR -62 146 23 23 33 0 0 chr12 75154462 75154492 -69127997 + AT_rich Low_complexity Low_complexity 1 30 0 429 305 51 68 chr12 75154840 75155191 -69127298 + L2 LINE L2 2390 2734 -580 804 199 15 0 chr12 75155274 75155405 -69127084 - FLAM_A SINE Alu 0 133 1 25 31 0 0 chr12 75155604 75155636 -69126853 + AT_rich Low_complexity Low_complexity 1 32 0 379 262 0 37 chr12 75155901 75156008 -69126481 - MIR3 SINE MIR 0 208 106 395 353 45 13 chr12 75156455 75156611 -69125878 - MIR SINE MIR -84 178 18 311 222 49 12 chr12 75156845 75156926 -69125563 - MIR SINE MIR -108 154 71 515 323 156 28 chr12 75157087 75157528 -69124961 + L2 LINE L2 2700 3194 -78 203 340 78 10 chr12 75158066 75158169 -69124320 - L2 LINE L2 -2935 379 270 461 249 18 122 chr12 75159078 75159299 -69123190 + MER21B LTR ERV1 12 209 -654 2719 45 0 0 chr12 75159300 75159611 -69122878 + AluY SINE Alu 1 311 0 1289 201 112 27 chr12 75159611 75160149 -69122340 + MER21B LTR ERV1 196 806 -57 4976 157 13 44 chr12 75160750 75161164 -69121325 - L1MB1 LINE L1 -1 6167 5742 599 186 73 0 chr12 75161164 75161288 -69121201 - FLAM_A SINE Alu 0 133 1 4976 157 13 44 chr12 75161288 75161925 -69120564 - L1MB1 LINE L1 -426 5742 5142 261 332 137 28 chr12 75161988 75162502 -69119987 + L2 LINE L2 1978 2625 -689 * 320 279 116 23 chr12 75162496 75162625 -69119864 + MIR SINE MIR 11 151 -111 372 361 71 18 chr12 75163147 75163316 -69119173 - L2 LINE L2 0 3272 3095 357 244 22 22 chr12 75163331 75163421 -69119068 - MER5B DNA MER1_type -16 162 73 2122 118 26 3 chr12 75163447 75163752 -69118737 + AluSx SINE Alu 1 312 0 306 0 0 0 chr12 75163853 75163887 -69118602 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 438 303 59 27 chr12 75164050 75164365 -69118124 + MLT1L LTR MaLR 168 523 -92 1940 149 0 52 chr12 75164377 75164706 -69117783 - AluJb SINE Alu 0 312 1 205 317 94 37 chr12 75164819 75165039 -69117450 - L2 LINE L2 -248 3065 2796 910 242 162 42 chr12 75165042 75165497 -69116992 + MLT1H LTR MaLR 1 549 0 596 304 78 46 chr12 75165539 75165741 -69116748 - L2 LINE L2 -587 2727 2508 2093 134 0 0 chr12 75165741 75166033 -69116456 + AluSx SINE Alu 5 296 -16 596 304 78 46 chr12 75166033 75166175 -69116314 - L2 LINE L2 -806 2508 2372 257 306 213 0 chr12 75167588 75167696 -69114793 - MIR SINE MIR -13 249 119 365 313 112 65 chr12 75167804 75168355 -69114134 + L2 LINE L2 2675 3264 -8 331 308 135 19 chr12 75168633 75168789 -69113700 + MIR3 SINE MIR 30 203 -5 1440 160 53 25 chr12 75169704 75169985 -69112504 - AluJo SINE Alu -21 291 3 378 228 32 112 chr12 75170386 75170457 -69112032 - MIR SINE MIR -65 143 109 2000 152 0 3 chr12 75170457 75170754 -69111735 + AluSx SINE Alu 1 296 -16 378 228 32 112 chr12 75170754 75170839 -69111650 - MIR SINE MIR -99 109 19 1712 201 0 0 chr12 75172096 75172399 -69110090 + AluJb SINE Alu 1 303 -9 192 77 0 0 chr12 75172445 75172471 -69110018 + (CA)n Simple_repeat Simple_repeat 1 26 0 195 227 284 0 chr12 75172752 75172840 -69109649 - MER5A DNA MER1_type -27 162 50 211 176 0 0 chr12 75172942 75172976 -69109513 + C-rich Low_complexity Low_complexity 2 35 0 289 339 89 47 chr12 75173027 75173263 -69109226 - L2 LINE L2 -188 3084 2839 238 318 31 39 chr12 75173304 75173433 -69109056 - L3 LINE CR1 -112 1465 1338 2134 103 0 0 chr12 75173565 75173879 -69108610 + AluSg SINE Alu 1 314 0 5671 58 11 14 chr12 75174082 75174824 -69107665 - L1PA7 LINE L1 -6 6148 5409 741 244 98 79 chr12 75175090 75175406 -69107083 + MLT1G1 LTR MaLR 1 322 -273 274 200 0 0 chr12 75175416 75175460 -69107029 + MLT1G1 LTR MaLR 476 520 -65 1611 208 0 10 chr12 75175460 75175773 -69106716 + AluJo SINE Alu 1 310 -2 518 313 119 54 chr12 75175974 75176326 -69106163 + ERVL LTR ERVL 1758 2171 -3522 367 306 9 18 chr12 75176326 75176437 -69106052 + ERVL LTR ERVL 2975 3084 -1912 559 269 86 11 chr12 75176510 75176738 -69105751 + ERVL LTR ERVL 3197 3476 -2227 810 244 144 87 chr12 75177134 75177366 -69105123 + HAL1 LINE L1 1646 1863 -644 2059 138 0 0 chr12 75177366 75177655 -69104834 - AluJb SINE Alu -23 289 1 810 244 144 87 chr12 75177655 75178132 -69104357 + HAL1 LINE L1 1863 2395 -112 679 214 28 0 chr12 75178221 75178366 -69104123 - MIR SINE MIR 0 262 114 6760 72 3 43 chr12 75178406 75179390 -69103099 + L1MA1 LINE L1 5357 6301 -1 1702 129 4 11 chr12 75179414 75179677 -69102812 + AluSq SINE Alu 50 310 -3 230 333 20 33 chr12 75179779 75179929 -69102560 + L1ME LINE L1 5458 5605 -516 374 230 129 39 chr12 75180131 75180309 -69102180 - L1MC4a LINE L1 -1907 5901 5708 186 118 0 0 chr12 75180456 75180490 -69101999 + (A)n Simple_repeat Simple_repeat 1 34 0 242 248 83 55 chr12 75181246 75181464 -69101025 - L1M4 LINE L1 -2717 3429 3206 274 304 0 25 chr12 75181810 75181889 -69100600 + L2 LINE L2 3187 3263 -9 1415 208 65 27 chr12 75182167 75182461 -69100028 - AluJo SINE Alu -1 311 7 1380 188 47 47 chr12 75182909 75182986 -69099503 + MLT1C LTR MaLR 84 160 -307 2158 135 0 0 chr12 75182986 75183283 -69099206 - AluSx SINE Alu -15 297 1 1380 188 47 47 chr12 75183283 75183589 -69098900 + MLT1C LTR MaLR 159 467 0 283 264 111 29 chr12 75183592 75183762 -69098727 - L1MC4a LINE L1 -515 5606 5412 832 125 28 28 chr12 75183762 75183906 -69098583 - L1MA9 LINE L1 0 6312 6169 1844 112 56 33 chr12 75183920 75184225 -69098264 + MER7A DNA MER2_type 1 310 -36 21 57 0 0 chr12 75184530 75184565 -69097924 + AT_rich Low_complexity Low_complexity 1 35 0 2461 31 41 0 chr12 75184612 75184906 -69097583 - AluY SINE Alu -5 306 1 24 53 0 0 chr12 75185020 75185058 -69097431 + AT_rich Low_complexity Low_complexity 1 38 0 4347 167 45 15 chr12 75185168 75186219 -69096270 - L1MB8 LINE L1 -6 6172 5091 1013 238 60 21 chr12 75186221 75186502 -69095987 - L1MB8 LINE L1 -1114 5032 4741 14582 116 37 30 chr12 75186502 75187356 -69095133 + Tigger1 DNA MER2_type 1 848 -1570 1715 160 31 0 chr12 75187356 75187644 -69094845 + AluJb SINE Alu 1 297 -15 14582 116 37 30 chr12 75187644 75188231 -69094258 + Tigger1 DNA MER2_type 848 1429 -989 2109 143 0 6 chr12 75188231 75188545 -69093944 + AluSx SINE Alu 1 312 0 14582 116 37 30 chr12 75188545 75188812 -69093677 + Tigger1 DNA MER2_type 1429 1693 -725 2109 125 3 20 chr12 75188812 75189117 -69093372 + AluSx SINE Alu 1 300 -12 14582 116 37 30 chr12 75189117 75189802 -69092687 + Tigger1 DNA MER2_type 1693 2413 -5 4087 183 20 40 chr12 75189803 75190172 -69092317 - L1MB8 LINE L1 -1416 4730 4355 1958 142 10 23 chr12 75190172 75190481 -69092008 - AluJb SINE Alu -7 305 1 4087 183 20 40 chr12 75190481 75191082 -69091407 - L1MB8 LINE L1 -1791 4355 3780 932 178 89 0 chr12 75191080 75191282 -69091207 + L1MB8 LINE L1 3585 3804 -2342 * 200 278 56 0 chr12 75191318 75191372 -69091117 + MER5A DNA MER1_type 66 122 -67 * 531 189 0 90 chr12 75191367 75191413 -69091076 - MER5A DNA MER1_type -78 111 62 1568 179 23 36 chr12 75191413 75191714 -69090775 - AluJo SINE Alu -15 297 1 531 189 0 90 chr12 75191714 75191789 -69090700 - MER5A DNA MER1_type -127 62 1 22 0 0 0 chr12 75191879 75191901 -69090588 + AT_rich Low_complexity Low_complexity 1 22 0 997 208 143 42 chr12 75193065 75193330 -69089159 - AluJo SINE Alu -10 292 1 1687 201 66 54 chr12 75193418 75193915 -69088574 - MLT1D LTR MaLR 0 505 3 1153 283 93 55 chr12 75194360 75195328 -69087161 + L2 LINE L2 2303 3308 -5 2005 124 0 0 chr12 75195912 75196186 -69086303 + AluSx SINE Alu 3 276 -36 194 0 0 37 chr12 75196188 75196215 -69086274 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 23 54 0 0 chr12 75196366 75196403 -69086086 + AT_rich Low_complexity Low_complexity 1 37 0 2486 58 3 7 chr12 75196459 75196769 -69085720 + AluY SINE Alu 1 309 -2 763 182 28 34 chr12 75196890 75197066 -69085423 + MER5B DNA MER1_type 1 175 -3 195 162 0 0 chr12 75199175 75199212 -69083277 + T-rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr12 75200362 75200391 -69082098 + GC_rich Low_complexity Low_complexity 1 29 0 213 39 0 0 chr12 75200416 75200442 -69082047 + (CCG)n Simple_repeat Simple_repeat 3 28 0 34 65 0 0 chr12 75200505 75200567 -69081922 + GC_rich Low_complexity Low_complexity 1 62 0 258 32 0 0 chr12 75200856 75200887 -69081602 + (CCCCG)n Simple_repeat Simple_repeat 3 33 0 21 0 0 0 chr12 75201023 75201044 -69081445 + AT_rich Low_complexity Low_complexity 1 21 0 311 303 65 110 chr12 75201052 75201561 -69080928 - L1M2 LINE L1 -5808 1041 556 22 0 0 0 chr12 75204263 75204285 -69078204 + AT_rich Low_complexity Low_complexity 1 22 0 830 188 120 78 chr12 75204606 75204963 -69077526 - MLT1A2 LTR MaLR -2 372 1 345 333 85 24 chr12 75205879 75206044 -69076445 - L3 LINE CR1 -110 1467 1293 979 42 25 0 chr12 75206071 75206191 -69076298 + AluY SINE Alu 182 304 -7 256 280 84 9 chr12 75206200 75206307 -69076182 - L3 LINE CR1 -296 1281 1167 219 128 77 0 chr12 75206621 75206660 -69075829 - L2 LINE L2 -575 2739 2698 197 246 9 118 chr12 75208749 75208820 -69073669 - L3 LINE CR1 -307 1270 1214 387 126 362 0 chr12 75208820 75208947 -69073542 + MER104 DNA MER2_type 5 177 -3 197 246 9 118 chr12 75208947 75208985 -69073504 - L3 LINE CR1 -363 1214 1173 433 284 88 104 chr12 75209038 75209569 -69072920 - L3 LINE CR1 -104 1473 951 199 366 167 19 chr12 75209631 75209847 -69072642 - L3 LINE CR1 -737 840 593 225 0 0 0 chr12 75213129 75213154 -69069335 + (T)n Simple_repeat Simple_repeat 1 25 0 2130 115 0 16 chr12 75213693 75213998 -69068491 + AluSc SINE Alu 1 300 -9 389 298 144 16 chr12 75214658 75214846 -69067643 - MIR SINE MIR -5 257 46 233 390 50 0 chr12 75215744 75215844 -69066645 + L2 LINE L2 3204 3308 -5 1529 162 68 40 chr12 75216229 75216580 -69065909 - MER46B DNA MER2_type 0 236 1 21 0 0 0 chr12 75216881 75216902 -69065587 + AT_rich Low_complexity Low_complexity 1 21 0 1622 194 0 28 chr12 75217061 75217350 -69065139 - AluJo SINE Alu -31 281 1 28 29 0 0 chr12 75218188 75218223 -69064266 + AT_rich Low_complexity Low_complexity 1 35 0 862 190 10 62 chr12 75218611 75218806 -69063683 + MER5A DNA MER1_type 5 189 0 294 276 94 74 chr12 75218905 75219108 -69063381 - MIR SINE MIR -7 255 49 2387 57 7 10 chr12 75219416 75219717 -69062772 - AluY SINE Alu -11 300 1 1538 171 24 21 chr12 75222335 75222622 -69059867 - AluJo SINE Alu -24 288 1 351 323 104 31 chr12 75223283 75223475 -69059014 + MIR SINE MIR 47 252 -10 224 232 18 0 chr12 75224108 75224164 -69058325 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 38 0 0 0 chr12 75225288 75225326 -69057163 + AT_rich Low_complexity Low_complexity 1 38 0 4823 264 173 32 chr12 75225380 75225882 -69056607 - L2 LINE L2 -8 3305 2875 1927 125 44 14 chr12 75225882 75226178 -69056311 + AluSx SINE Alu 1 305 -7 4823 264 173 32 chr12 75226178 75227954 -69054535 - L2 LINE L2 -438 2875 1351 198 0 0 0 chr12 75227954 75227976 -69054513 + (TG)n Simple_repeat Simple_repeat 2 23 0 4823 264 173 32 chr12 75227976 75227990 -69054499 - L2 LINE L2 -1962 1351 1340 420 111 0 0 chr12 75227990 75228053 -69054436 + (CA)n Simple_repeat Simple_repeat 2 64 0 4823 264 173 32 chr12 75228053 75228208 -69054281 - L2 LINE L2 -1973 1340 508 22 0 0 0 chr12 75229082 75229104 -69053385 + AT_rich Low_complexity Low_complexity 1 22 0 521 335 14 14 chr12 75230146 75230367 -69052122 + L3 LINE CR1 982 1202 -375 912 176 8 114 chr12 75230852 75231097 -69051392 + MER20 DNA MER1_type 1 219 0 201 175 0 0 chr12 75231420 75231460 -69051029 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 236 231 0 0 chr12 75232268 75232320 -69050169 + L2 LINE L2 3261 3312 -1 421 217 143 25 chr12 75233096 75233257 -69049232 - MER104 DNA MER2_type 0 180 1 243 266 26 136 chr12 75234741 75234895 -69047594 + L2 LINE L2 3177 3313 0 210 247 14 68 chr12 75234853 75234926 -69047563 - MER91B DNA MER1_type -94 96 28 * 21 0 0 0 chr12 75238458 75238479 -69044010 + AT_rich Low_complexity Low_complexity 1 21 0 747 158 0 0 chr12 75239252 75239372 -69043117 - L2 LINE L2 -2 3311 3192 604 275 94 23 chr12 75239455 75239626 -69042863 - MIR3 SINE MIR -5 203 21 298 335 141 6 chr12 75241443 75241613 -69040876 - MIR3 SINE MIR -6 202 10 435 244 168 8 chr12 75241649 75241780 -69040709 - MER5B DNA MER1_type -26 152 1 622 241 146 14 chr12 75242503 75242723 -69039766 + L2 LINE L2 2404 2652 -662 217 288 81 81 chr12 75242719 75242830 -69039659 + L2 LINE L2 3203 3313 0 * 397 253 353 20 chr12 75242991 75243141 -69039348 + MIR SINE MIR 57 256 -6 186 43 0 0 chr12 75243142 75243165 -69039324 + (TG)n Simple_repeat Simple_repeat 2 24 0 217 261 54 76 chr12 75243715 75243807 -69038682 - L2 LINE L2 -2 3270 3181 1015 194 40 10 chr12 75244761 75244962 -69037527 + MER6B DNA MER2_type 1 207 -3 23 68 0 0 chr12 75247022 75247066 -69035423 + AT_rich Low_complexity Low_complexity 1 44 0 429 147 0 0 chr12 75247069 75247137 -69035352 - MIR SINE MIR -1 261 194 195 42 0 0 chr12 75247322 75247346 -69035143 + (CA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr12 75248053 75248074 -69034415 + AT_rich Low_complexity Low_complexity 1 21 0 245 296 35 17 chr12 75248351 75248466 -69034023 - L2 LINE L2 -86 3227 3111 290 49 20 40 chr12 75248581 75248637 -69033852 + L1PB2 LINE L1 6097 6151 0 225 0 0 0 chr12 75249430 75249455 -69033034 + (A)n Simple_repeat Simple_repeat 1 25 0 548 84 0 12 chr12 75249730 75249813 -69032676 + L1PA8 LINE L1 6091 6172 0 250 313 21 0 chr12 75249826 75249922 -69032567 - L1M4 LINE L1 -3715 2431 2334 459 251 295 11 chr12 75250873 75251056 -69031433 + MIR SINE MIR 20 254 -8 29 47 0 0 chr12 75251555 75251598 -69030891 + AT_rich Low_complexity Low_complexity 1 43 0 2240 94 0 0 chr12 75251903 75252190 -69030299 + AluSp SINE Alu 1 287 -26 270 0 0 0 chr12 75252199 75252229 -69030260 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 500 270 69 31 chr12 75252670 75252829 -69029660 - MIR SINE MIR -86 176 12 643 298 128 48 chr12 75253043 75253243 -69029246 + L1M4 LINE L1 4700 4883 -1263 532 268 14 36 chr12 75253243 75253463 -69029026 + MER58C DNA MER1_type 1 215 0 643 298 128 48 chr12 75253463 75253903 -69028586 + L1M4 LINE L1 4883 5391 -755 455 227 153 61 chr12 75254249 75254412 -69028077 - MIR SINE MIR -84 178 1 1959 140 17 43 chr12 75256829 75257180 -69025309 + MER2 DNA MER2_type 3 344 0 29 0 0 0 chr12 75257199 75257228 -69025261 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr12 75258458 75258482 -69024007 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 252 0 0 0 chr12 75258481 75258509 -69023980 + (GA)n Simple_repeat Simple_repeat 1 28 0 207 195 0 0 chr12 75258625 75258666 -69023823 + GA-rich Low_complexity Low_complexity 1 41 0 666 291 128 45 chr12 75258896 75259343 -69023146 - L2 LINE L2 -352 2962 2479 682 152 29 0 chr12 75259509 75259614 -69022875 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3130 141 120 20 chr12 75259612 75260264 -69022225 + Tigger3(Golem) DNA MER2_type 2298 3014 -15 1959 137 0 13 chr12 75260608 75260908 -69021581 + AluSx SINE Alu 1 296 -16 192 40 0 0 chr12 75261171 75261196 -69021293 + (A)n Simple_repeat Simple_repeat 1 25 0 914 139 40 13 chr12 75261598 75261749 -69020740 + THE1B LTR MaLR 1 155 -209 42861 40 11 1 chr12 75261749 75267840 -69014649 + L1PA4 LINE L1 4 6152 -3 1345 95 67 9 chr12 75267850 75268060 -69014429 + THE1B LTR MaLR 141 362 -2 249 292 216 23 chr12 75268077 75268382 -69014107 + L2 LINE L2 2614 2977 -337 21 0 0 0 chr12 75268453 75268474 -69014015 + AT_rich Low_complexity Low_complexity 1 21 0 693 274 79 14 chr12 75268474 75268689 -69013800 - MIR SINE MIR -32 230 2 2003 136 3 7 chr12 75269029 75269331 -69013158 + AluSx SINE Alu 3 303 -9 225 196 118 20 chr12 75272144 75272195 -69010294 - L2 LINE L2 0 3272 3217 234 0 0 0 chr12 75273124 75273150 -69009339 + (A)n Simple_repeat Simple_repeat 1 26 0 2155 114 7 0 chr12 75273606 75273903 -69008586 + AluSp SINE Alu 1 299 -14 807 272 57 1 chr12 75274382 75274661 -69007828 + L2 LINE L2 2785 3084 -229 1183 233 77 34 chr12 75274661 75275111 -69007378 - L1MC4a LINE L1 -236 7572 7098 2436 60 0 0 chr12 75275111 75275409 -69007080 - AluY SINE Alu -13 298 1 1183 233 77 34 chr12 75275409 75275455 -69007034 - L1MC4a LINE L1 -710 7098 7055 665 122 149 0 chr12 75276243 75276350 -69006139 + FLAM_C SINE Alu 5 127 -6 2064 270 65 49 chr12 75276369 75278017 -69004472 + L1MEc LINE L1 5 1696 -4519 233 273 30 30 chr12 75278020 75278119 -69004370 + GA-rich Low_complexity Low_complexity 5 103 0 224 328 0 0 chr12 75278223 75278281 -69004208 - L2 LINE L2 -220 3052 2995 320 218 161 35 chr12 75278375 75278462 -69004027 - L2 LINE L2 -27 3286 3189 2172 112 0 19 chr12 75278615 75278928 -69003561 + AluSq SINE Alu 1 307 -6 553 271 95 56 chr12 75279056 75279362 -69003127 + L1MEd LINE L1 510 827 -5292 228 265 0 31 chr12 75279533 75279631 -69002858 + L1MEd LINE L1 2756 2850 -3279 342 259 195 36 chr12 75279642 75279893 -69002596 + L1MEd LINE L1 3068 3358 -2771 381 313 132 7 chr12 75279964 75280236 -69002253 + L1MEd LINE L1 4177 4482 -1647 275 281 112 46 chr12 75280262 75280710 -69001779 + L1MEd LINE L1 4561 5046 -1083 2174 92 6 25 chr12 75281549 75281864 -69000625 + AluY SINE Alu 1 309 -2 326 266 89 0 chr12 75282057 75282136 -69000353 + MER119 DNA MER1_type 34 119 -464 414 232 105 0 chr12 75282148 75282243 -69000246 + MER119 DNA MER1_type 458 562 -21 24 67 0 0 chr12 75282468 75282513 -68999976 + AT_rich Low_complexity Low_complexity 1 45 0 1929 148 0 7 chr12 75282522 75282819 -68999670 + AluSx SINE Alu 6 300 -12 2133 102 3 32 chr12 75282819 75283133 -68999356 + AluSp SINE Alu 1 306 -7 210 71 0 0 chr12 75283388 75283416 -68999073 + (T)n Simple_repeat Simple_repeat 1 28 0 381 22 0 0 chr12 75283554 75283600 -68998889 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 908 168 0 0 chr12 75283609 75283752 -68998737 - FRAM SINE Alu -35 141 1 282 198 0 74 chr12 75283852 75283933 -68998556 - MER104 DNA Tc2 -88 92 18 296 317 62 28 chr12 75284945 75285061 -68997428 - L2 LINE L2 -5 3308 3185 952 184 0 88 chr12 75285061 75285289 -68997200 + MER3 DNA MER1_type 1 208 -1 296 317 62 28 chr12 75285289 75285317 -68997172 - L2 LINE L2 -128 3185 3159 2181 81 27 3 chr12 75285683 75285978 -68996511 + AluSg SINE Alu 4 305 -5 726 135 15 4 chr12 75286624 75286764 -68995725 - L1MA4A LINE L1 -125 6178 6043 458 58 43 0 chr12 75287004 75287073 -68995416 + L1MA4A LINE L1 6224 6295 -8 27 0 0 0 chr12 75289683 75289710 -68992779 + AT_rich Low_complexity Low_complexity 1 27 0 28 61 0 0 chr12 75290089 75290138 -68992351 + AT_rich Low_complexity Low_complexity 1 49 0 495 257 111 6 chr12 75291465 75291636 -68990853 + L1MD3 LINE L1 287 475 -6132 * 591 261 88 8 chr12 75291610 75291963 -68990526 + L1MD3 LINE L1 1352 1851 -4756 1143 236 87 18 chr12 75291963 75292352 -68990137 + L1MD3 LINE L1 5837 6252 -2023 212 165 99 11 chr12 75292352 75292411 -68990078 + MIR3 SINE MIR 101 167 -41 203 259 52 0 chr12 75293533 75293591 -68988898 + MIR SINE MIR 91 151 -111 2242 274 176 19 chr12 75293618 75294553 -68987936 - L2 LINE L2 -1240 2074 993 539 323 36 5 chr12 75294553 75294745 -68987744 + L2 LINE L2 2863 3060 -253 265 316 125 22 chr12 75294757 75294893 -68987596 + L2 LINE L2 3163 3312 -1 622 247 73 27 chr12 75295378 75295390 -68987099 + MLT1L LTR MaLR 131 141 -474 2124 116 26 0 chr12 75295390 75295692 -68986797 + AluSq SINE Alu 1 310 -3 622 247 73 27 chr12 75295692 75296064 -68986425 + MLT1L LTR MaLR 141 558 -57 1499 205 93 28 chr12 75297222 75297695 -68984794 + Charlie4a DNA MER1_type 5 508 0 252 213 12 125 chr12 75297853 75297933 -68984556 - MIR SINE MIR -108 100 30 476 263 53 112 chr12 75298167 75298302 -68984187 - Charlie8 DNA MER1_type -1928 489 348 1623 159 3 51 chr12 75298302 75298616 -68983873 + AluJo SINE Alu 1 299 -13 476 263 53 112 chr12 75298616 75298803 -68983686 - Charlie8 DNA MER1_type -2069 348 186 665 246 82 14 chr12 75298804 75299024 -68983465 + L1MDa LINE L1 1865 2099 -4441 337 85 21 0 chr12 75299032 75299079 -68983410 - MER58A DNA MER1_type 0 224 177 * 1051 217 15 5 chr12 75299076 75299279 -68983210 - MER58A DNA MER1_type -19 205 1 379 282 72 11 chr12 75299281 75299462 -68983027 + L1MDa LINE L1 2100 2291 -4249 1433 248 54 31 chr12 75299476 75299923 -68982566 + MLT1C LTR MaLR 11 467 0 2904 249 89 48 chr12 75299925 75300640 -68981849 + L1MDa LINE L1 2345 3030 -3510 1859 103 10 57 chr12 75300640 75300962 -68981527 + AluSp SINE Alu 1 308 0 2904 249 89 48 chr12 75300962 75302119 -68980370 + L1MDa LINE L1 3030 4247 -2293 4003 246 87 40 chr12 75302120 75304089 -68978400 + L1M4 LINE L1 59 2382 -4756 1991 136 3 13 chr12 75304089 75304398 -68978091 + AluSx SINE Alu 1 306 -6 4003 246 87 40 chr12 75304398 75304458 -68978031 + L1M4 LINE L1 2382 2438 -4700 2238 60 0 7 chr12 75304487 75304794 -68977695 + AluY SINE Alu 1 305 0 3051 233 45 59 chr12 75304794 75305446 -68977043 + L1M4 LINE L1 3890 4519 -2438 2396 80 0 6 chr12 75305446 75305759 -68976730 + AluY SINE Alu 1 311 0 3051 233 45 59 chr12 75305759 75306334 -68976155 + L1M4 LINE L1 4519 5100 -1857 468 218 53 18 chr12 75306310 75306480 -68976009 + L1ME2 LINE L1 3251 3426 -3531 * 1757 230 83 25 chr12 75306544 75307157 -68975332 + L1ME2 LINE L1 5079 5727 -1230 678 241 90 43 chr12 75307361 75307684 -68974805 + L1ME2 LINE L1 6619 6956 -19 269 311 6 106 chr12 75307826 75307987 -68974502 + MIR3 SINE MIR 1 145 -63 661 293 180 37 chr12 75308038 75308516 -68973973 + L2 LINE L2 2757 3313 0 2338 64 0 22 chr12 75309395 75309707 -68972782 + AluY SINE Alu 1 305 -6 358 293 138 6 chr12 75309722 75309889 -68972600 - MIR SINE MIR -10 252 64 405 226 104 18 chr12 75309903 75310128 -68972361 + L1ME LINE L1 5597 5867 -254 189 0 0 0 chr12 75310458 75310479 -68972010 + (T)n Simple_repeat Simple_repeat 1 21 0 1995 142 3 6 chr12 75312051 75312362 -68970127 - AluSg SINE Alu 0 310 1 1916 198 114 35 chr12 75312476 75312805 -68969684 + MER44D DNA MER2_type 1 440 -2047 2246 83 0 7 chr12 75312805 75313105 -68969384 - AluSc SINE Alu -11 298 1 1916 198 114 35 chr12 75313105 75313284 -68969205 + MER44D DNA MER2_type 440 604 -1 269 308 50 8 chr12 75313417 75313537 -68968952 - MIR SINE MIR -137 125 1 21 0 0 0 chr12 75313751 75313772 -68968717 + AT_rich Low_complexity Low_complexity 1 21 0 228 342 0 25 chr12 75313876 75313955 -68968534 - L2 LINE L2 0 3313 3237 339 293 69 6 chr12 75314218 75314400 -68968089 - MIR SINE MIR -74 188 33 1824 151 3 0 chr12 75314595 75314886 -68967603 + AluJb SINE Alu 21 312 0 186 280 177 46 chr12 75315640 75315815 -68966674 + L2 LINE L2 2889 3086 -186 712 304 149 9 chr12 75316281 75316623 -68965866 + L2 LINE L2 2899 3288 -25 27 62 0 0 chr12 75317650 75317698 -68964791 + AT_rich Low_complexity Low_complexity 1 48 0 500 313 79 14 chr12 75318440 75318731 -68963758 - MER46C DNA MER2_type -2 336 27 248 366 110 37 chr12 75319259 75319505 -68962984 - L2 LINE L2 -5 3267 3004 2056 120 33 0 chr12 75319606 75319906 -68962583 + AluSx SINE Alu 1 310 -2 233 239 42 0 chr12 75323326 75323397 -68959092 + C-rich Low_complexity Low_complexity 2 75 0 23 0 0 0 chr12 75323521 75323544 -68958945 + GC_rich Low_complexity Low_complexity 1 23 0 180 245 59 98 chr12 75325474 75325576 -68956913 + MIR SINE MIR 153 250 -12 1078 306 61 43 chr12 75325925 75326434 -68956055 + L2 LINE L2 2323 2840 -474 868 245 163 38 chr12 75326510 75326963 -68955526 + MLT1J LTR MaLR 1 510 -1 580 253 157 80 chr12 75326964 75327327 -68955162 + L2 LINE L2 2923 3313 0 451 245 88 7 chr12 75327774 75327921 -68954568 + L1ME LINE L1 5497 5655 -466 2201 87 14 7 chr12 75327923 75328212 -68954277 + AluSx SINE Alu 1 291 -21 2085 131 0 25 chr12 75328212 75328526 -68953963 + AluSx SINE Alu 1 306 -6 242 198 161 0 chr12 75328595 75328676 -68953813 + L1ME LINE L1 5756 5849 -272 3373 198 31 57 chr12 75329217 75330082 -68952407 - MER21B LTR ERV1 -1 862 20 235 265 0 0 chr12 75330108 75330157 -68952332 - MER21B LTR ERV1 -793 70 22 1495 268 62 37 chr12 75330602 75331327 -68951162 + L1M3e LINE L1 1625 2367 -5122 960 154 7 0 chr12 75331340 75331483 -68951006 - FAM SINE Alu -16 169 26 12625 189 40 51 chr12 75331558 75332833 -68949656 + L1MA9 LINE L1 2178 3465 -4266 2565 71 0 0 chr12 75332833 75333142 -68949347 + AluY SINE Alu 1 309 -2 12625 189 40 51 chr12 75333142 75334056 -68948433 + L1MA9 LINE L1 3465 4387 -3344 2287 96 0 0 chr12 75334056 75334348 -68948141 + AluSq SINE Alu 21 312 -1 12625 189 40 51 chr12 75334348 75334726 -68947763 + L1MA9 LINE L1 4387 4768 -2963 637 236 0 0 chr12 75334726 75334849 -68947640 + FLAM_A SINE Alu 1 123 -10 12625 189 40 51 chr12 75334849 75337034 -68945455 + L1MA9 LINE L1 4768 6975 -756 1874 160 0 0 chr12 75337034 75337321 -68945168 + AluSx SINE Alu 1 287 -25 12625 189 40 51 chr12 75337321 75337688 -68944801 + L1MA9 LINE L1 6975 7344 -387 261 0 0 0 chr12 75337688 75337717 -68944772 + (CA)n Simple_repeat Simple_repeat 2 30 0 12625 189 40 51 chr12 75337717 75337753 -68944736 + L1MA9 LINE L1 7344 7379 -352 2218 94 0 20 chr12 75337753 75338052 -68944437 + AluSg SINE Alu 1 293 -17 12625 189 40 51 chr12 75338052 75338530 -68943959 + L1MA9 LINE L1 7379 7731 0 330 247 112 0 chr12 75338725 75338814 -68943675 - L2 LINE L2 -14 3258 3160 1433 192 77 0 chr12 75338953 75339213 -68943276 - AluJb SINE Alu -31 281 2 338 326 10 0 chr12 75339231 75339329 -68943160 + L2 LINE L2 3215 3313 0 788 291 36 22 chr12 75340200 75340631 -68941858 + MLT1J LTR MaLR 31 504 -7 239 94 245 0 chr12 75341045 75341098 -68941391 - MIR SINE MIR -71 191 126 1092 262 56 17 chr12 75341205 75341850 -68940639 - L1MEc LINE L1 -3689 2526 1897 21 0 0 0 chr12 75341874 75341895 -68940594 + AT_rich Low_complexity Low_complexity 1 21 0 6050 74 21 49 chr12 75341895 75343863 -68938626 - SVA Other Other -520 1384 1 284 328 36 0 chr12 75344010 75344202 -68938287 + L1ME4a LINE L1 5588 5786 -335 21 57 0 0 chr12 75344253 75344288 -68938201 + AT_rich Low_complexity Low_complexity 1 35 0 375 207 48 41 chr12 75344298 75344443 -68938046 + L1ME4a LINE L1 5969 6114 -7 389 307 101 40 chr12 75345368 75345517 -68936972 - MIR SINE MIR 0 262 93 9259 28 6 0 chr12 75345517 75347446 -68935043 + L1PA4 LINE L1 4226 6154 -1 389 307 101 40 chr12 75347446 75347524 -68934965 - MIR SINE MIR -169 93 21 2406 64 7 3 chr12 75348710 75349005 -68933484 + AluY SINE Alu 1 296 -15 994 152 6 12 chr12 75350130 75350301 -68932188 - MSTB LTR MaLR -48 378 209 217 230 27 0 chr12 75350379 75350453 -68932036 + GA-rich Low_complexity Low_complexity 1 76 0 1888 151 3 43 chr12 75350602 75350927 -68931562 - AluJo SINE Alu 0 312 1 765 154 0 0 chr12 75351131 75351254 -68931235 + FLAM_C SINE Alu 1 123 -10 208 159 23 23 chr12 75351579 75351623 -68930866 + (CCA)n Simple_repeat Simple_repeat 2 45 0 2288 92 16 7 chr12 75352456 75352760 -68929729 + AluSq SINE Alu 1 307 -6 539 259 202 16 chr12 75353731 75353974 -68928515 - L2 LINE L2 -28 3285 2998 689 315 28 39 chr12 75354174 75354530 -68927959 - L2 LINE L2 -1 3312 2961 201 147 0 0 chr12 75354703 75354737 -68927752 + (CATA)n Simple_repeat Simple_repeat 2 35 0 2279 104 0 10 chr12 75354801 75355109 -68927380 - AluSx SINE Alu -7 305 1 353 69 0 35 chr12 75355895 75355953 -68926536 + MADE1 DNA Mariner 1 56 -24 247 196 0 71 chr12 75357159 75357215 -68925274 - MER45 DNA AcHobo -1528 53 2 1030 264 105 75 chr12 75358175 75358869 -68923620 - L2 LINE L2 -95 3218 2517 249 232 21 113 chr12 75359111 75359305 -68923184 - L1ME LINE L1 -253 5868 5693 240 159 16 0 chr12 75359434 75359497 -68922992 - L1PB1 LINE L1 0 6151 6088 * 1522 90 19 60 chr12 75359494 75359760 -68922729 + L1PB1 LINE L1 5795 6049 -102 436 307 165 23 chr12 75360345 75360563 -68921926 - MIR SINE MIR -6 256 8 1781 102 113 4 chr12 75361170 75361435 -68921054 + AluSg1 SINE Alu 1 294 -15 2199 99 0 0 chr12 75361674 75361986 -68920503 - AluSx SINE Alu 0 312 1 1907 191 72 2 chr12 75362071 75362501 -68919988 + MLT1C LTR MaLR 6 465 -2 236 317 50 30 chr12 75362503 75362604 -68919885 - L2 LINE L2 -241 3072 2970 400 260 115 10 chr12 75362752 75362856 -68919633 - MIR SINE MIR -146 116 2 620 310 35 15 chr12 75363027 75363224 -68919265 - MIR SINE MIR -44 218 18 521 283 85 23 chr12 75363244 75363502 -68918987 - L1ME3 LINE L1 -11 6151 5878 1211 169 52 144 chr12 75363931 75364333 -68918156 - MLT1A1 LTR MaLR 0 365 1 357 306 43 14 chr12 75364476 75364618 -68917871 + MIR SINE MIR 39 189 -67 2195 84 3 3 chr12 75365105 75365411 -68917078 - AluSp SINE Alu 0 306 1 1351 252 58 34 chr12 75365607 75365805 -68916684 + L1M3e LINE L1 1 193 -6837 1089 152 69 131 chr12 75365805 75366194 -68916295 + MLT1A1 LTR MaLR 1 365 0 1351 252 58 34 chr12 75366194 75366482 -68916007 + L1M3e LINE L1 193 1638 -5392 2897 150 34 72 chr12 75366645 75366722 -68915767 - L1MA8 LINE L1 -398 5893 5815 2157 87 0 21 chr12 75366722 75367009 -68915480 - AluSg SINE Alu -29 281 1 2897 150 34 72 chr12 75367009 75367045 -68915444 - L1MA8 LINE L1 -476 5815 5779 261 0 0 0 chr12 75367045 75367074 -68915415 + (TG)n Simple_repeat Simple_repeat 2 30 0 2897 150 34 72 chr12 75367074 75367441 -68915048 - L1MA8 LINE L1 -512 5779 5447 1874 160 0 0 chr12 75367441 75367728 -68914761 - AluSx SINE Alu -25 287 1 2897 150 34 72 chr12 75367728 75367976 -68914513 - L1MA8 LINE L1 -844 5447 5191 9218 91 11 4 chr12 75368086 75369562 -68912927 - HERVH LTR ERV1 -5606 2107 580 201 83 71 71 chr12 75369608 75369692 -68912797 + (CACAC)n Simple_repeat Simple_repeat 2 85 0 181 77 77 48 chr12 75369728 75369832 -68912657 + (CACAA)n Simple_repeat Simple_repeat 2 108 0 318 117 80 37 chr12 75369919 75370081 -68912408 + (CACAA)n Simple_repeat Simple_repeat 3 171 0 28 19 0 56 chr12 75370230 75370284 -68912205 + AT_rich Low_complexity Low_complexity 1 51 0 2414 53 40 0 chr12 75370778 75371077 -68911412 - AluY SINE Alu 0 311 1 1072 82 0 0 chr12 75371077 75371211 -68911278 - AluY SINE Alu -177 134 1 1441 249 58 43 chr12 75371217 75371702 -68910787 + MLT1H LTR MaLR 46 537 -12 195 42 0 0 chr12 75372368 75372392 -68910097 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 805 254 16 60 chr12 75373550 75373798 -68908691 - LTR16C LTR ERVL 0 491 255 304 288 87 70 chr12 75373806 75374035 -68908454 - L1M4 LINE L1 -1330 4816 4584 4924 167 25 29 chr12 75374217 75375104 -68907385 - MER54A LTR ERVL 0 901 19 264 338 90 7 chr12 75375928 75376073 -68906416 + MIR SINE MIR 7 163 -45 220 411 8 8 chr12 75376187 75376311 -68906178 + L2 LINE L2 2872 2995 -277 454 228 0 61 chr12 75376663 75376843 -68905646 + (TCCA)n Simple_repeat Simple_repeat 1 169 0 37 69 0 0 chr12 75377209 75377281 -68905208 + AT_rich Low_complexity Low_complexity 1 72 0 1059 154 25 0 chr12 75377290 75377491 -68904998 - L1MA4 LINE L1 -29 6271 6066 934 129 0 0 chr12 75377491 75377630 -68904859 - AluSg/x SINE Alu 0 312 174 3916 136 11 8 chr12 75377634 75378274 -68904215 - L1MA4 LINE L1 -361 5939 5298 1919 113 31 3 chr12 75378293 75378585 -68903904 - L1PA13 LINE L1 -19 6144 5845 2222 122 48 0 chr12 75378585 75378921 -68903568 + L1PA13 LINE L1 5487 5838 -323 * 7232 202 30 3 chr12 75378917 75381099 -68901390 - L1 LINE L1 -841 5305 3010 1994 103 54 21 chr12 75381099 75381629 -68900860 - MER4A LTR ERV1 0 664 1 18242 121 83 46 chr12 75381635 75382894 -68899595 - MER4A-int LTR ERV1 -2 6596 5386 296 75 0 38 chr12 75382900 75382953 -68899536 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 400 99 0 0 chr12 75382953 75383009 -68899480 - L1PA11 LINE L1 -30 6134 6068 18242 121 83 46 chr12 75383009 75385369 -68897120 - MER4A-int LTR ERV1 -1212 5386 3116 4043 119 34 67 chr12 75385369 75385954 -68896535 + LTR8 LTR ERV1 1 559 -132 2048 124 0 41 chr12 75385954 75386268 -68896221 + AluSg SINE Alu 1 301 -9 4043 119 34 67 chr12 75386268 75386397 -68896092 + LTR8 LTR ERV1 559 691 0 18242 121 83 46 chr12 75386397 75386481 -68896008 - MER4A-int LTR ERV1 -3482 3116 3037 1739 162 58 30 chr12 75386481 75386846 -68895643 - THE1C LTR MaLR 0 375 1 18242 121 83 46 chr12 75386846 75388190 -68894299 - MER4A-int LTR ERV1 -3561 3037 196 1389 224 39 19 chr12 75388257 75388569 -68893920 - MER4A-int LTR ERV1 -4172 2159 1842 2766 101 172 10 chr12 75388717 75389265 -68893224 - MER4A-int LTR ERV1 -5912 686 1 1877 141 52 19 chr12 75389267 75389806 -68892683 - MER4A LTR ERV1 0 664 2 249 108 0 0 chr12 75389808 75389845 -68892644 - L1 LINE L1 -3134 3012 2976 2051 162 65 10 chr12 75390593 75390995 -68891494 + MSTB LTR MaLR 1 424 -2 30 0 0 0 chr12 75391406 75391436 -68891053 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr12 75391807 75391851 -68890638 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 75391921 75391944 -68890545 + AT_rich Low_complexity Low_complexity 1 23 0 196 244 22 0 chr12 75392085 75392130 -68890359 - MIR SINE MIR -37 225 180 278 277 24 12 chr12 75392317 75392400 -68890089 - MIR3 SINE MIR -10 198 115 2042 128 13 0 chr12 75392471 75392777 -68889712 - AluSx SINE Alu -2 310 1 213 224 0 0 chr12 75392873 75392931 -68889558 + (TG)n Simple_repeat Simple_repeat 1 58 0 182 385 0 0 chr12 75394080 75394145 -68888344 - L2 LINE L2 -15 3298 3234 255 324 101 36 chr12 75395587 75395648 -68886841 + L2 LINE L2 2724 2780 -534 2117 128 7 0 chr12 75395648 75395944 -68886545 + AluSx SINE Alu 1 298 -14 255 324 101 36 chr12 75395944 75396101 -68886388 + L2 LINE L2 2780 2956 -358 534 226 244 6 chr12 75396161 75396329 -68886160 - MIR SINE MIR -26 236 29 44 0 0 0 chr12 75396437 75396481 -68886008 + AT_rich Low_complexity Low_complexity 1 44 0 223 146 79 6 chr12 75396486 75396650 -68885839 + (TA)n Simple_repeat Simple_repeat 1 176 0 30 45 0 0 chr12 75396666 75396710 -68885779 + AT_rich Low_complexity Low_complexity 1 44 0 1707 125 56 26 chr12 75396717 75397021 -68885468 - THE1C LTR MaLR -45 330 18 1347 163 62 9 chr12 75397021 75397424 -68885065 + MER84 LTR ERVI 1 507 0 5146 94 49 13 chr12 75397424 75398176 -68884313 + MER84-int LTR ERV1 1 779 -4175 * 19425 83 9 17 chr12 75398175 75400812 -68881677 + MER84-int LTR ERV1 894 3507 -1447 928 114 13 60 chr12 75400812 75400961 -68881528 + AluSg SINE Alu 29 170 -140 1447 165 51 0 chr12 75400961 75401198 -68881291 - MER84-int LTR ERV1 -1210 3744 3496 945 177 0 0 chr12 75401198 75401376 -68881113 - AluSg/x SINE Alu 0 314 137 8079 84 24 21 chr12 75401376 75402508 -68879981 + MER84-int LTR ERV1 3820 4954 0 1118 182 103 7 chr12 75402509 75402895 -68879594 + MER84 LTR ERVI 2 507 0 10695 195 43 22 chr12 75402921 75404871 -68877618 - L1 LINE L1 -1214 4932 3024 2092 132 7 0 chr12 75404871 75405167 -68877322 - AluSg SINE Alu -12 298 1 10695 195 43 22 chr12 75405167 75405694 -68876795 - L1 LINE L1 -3122 3024 2400 2424 71 3 27 chr12 75405694 75406032 -68876457 + L1PA5 LINE L1 5820 6149 -5 10695 195 43 22 chr12 75406032 75406081 -68876408 - L1 LINE L1 -3746 2400 2353 3383 139 27 39 chr12 75406081 75406570 -68875919 + L1PB4 LINE L1 4982 5452 -704 1526 206 7 0 chr12 75406570 75406852 -68875637 - AluJo SINE Alu -28 284 1 3383 139 27 39 chr12 75406852 75407255 -68875234 + L1PB4 LINE L1 5452 5858 -298 2038 76 0 0 chr12 75407255 75407518 -68874971 + HERVH LTR ERV1 4572 4834 -2879 1532 143 23 4 chr12 75407546 75407811 -68874678 + HERVH LTR ERV1 5747 6016 -1697 * 3656 112 5 18 chr12 75407792 75408364 -68874125 + HERVH LTR ERV1 7149 7713 0 1080 162 86 117 chr12 75408364 75408783 -68873706 + LTR7 LTR ERV1 1 406 -44 237 33 0 0 chr12 75408785 75408815 -68873674 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1495 154 70 0 chr12 75408817 75409089 -68873400 + L1PB4 LINE L1 5860 6150 -6 242 200 0 71 chr12 75409448 75409518 -68872971 - MIR SINE MIR -75 187 123 536 228 114 7 chr12 75409560 75409709 -68872780 + MIR SINE MIR 4 168 -94 249 333 103 0 chr12 75409774 75409861 -68872628 - L2 LINE L2 -29 3243 3148 314 244 0 12 chr12 75409981 75410067 -68872422 + L1MC2 LINE L1 6251 6335 -9 503 220 101 38 chr12 75410326 75410485 -68872004 + MIR SINE MIR 4 172 -90 26 50 0 0 chr12 75410512 75410552 -68871937 + AT_rich Low_complexity Low_complexity 1 40 0 2068 121 0 0 chr12 75410630 75410911 -68871578 + AluSq SINE Alu 3 283 -30 204 169 39 0 chr12 75410995 75411072 -68871417 + (TA)n Simple_repeat Simple_repeat 1 80 0 311 222 44 44 chr12 75411075 75411165 -68871324 - L1MC4 LINE L1 -1339 6703 6614 438 170 0 0 chr12 75411170 75411264 -68871225 + (TA)n Simple_repeat Simple_repeat 1 94 0 2043 123 7 3 chr12 75411265 75411557 -68870932 - AluSx SINE Alu -19 293 1 913 276 44 46 chr12 75411574 75412093 -68870396 + L1ME4a LINE L1 5530 6047 -74 1342 91 19 19 chr12 75412417 75412626 -68869863 + L1PB2 LINE L1 5941 6149 -2 821 165 0 0 chr12 75412718 75412845 -68869644 - FLAM_C SINE Alu -12 131 5 250 150 25 0 chr12 75412845 75412885 -68869604 - Alu SINE Alu -260 41 1 1091 232 13 103 chr12 75413059 75413438 -68869051 - LTR16A1 LTR ERVL -10 447 103 2388 79 0 7 chr12 75413545 75413850 -68868639 - AluY SINE Alu -8 303 1 2172 112 20 0 chr12 75413861 75414165 -68868324 - AluSx SINE Alu -2 310 1 468 228 8 31 chr12 75414333 75414460 -68868029 - L2 LINE L2 -3 3310 3187 186 306 19 56 chr12 75414724 75414832 -68867657 + MIR SINE MIR 94 197 -65 5811 92 22 0 chr12 75414978 75415825 -68866664 - L1MA2 LINE L1 0 6304 5439 8617 195 15 14 chr12 75415825 75417420 -68865069 - L1M1 LINE L1 -5953 1612 17 277 291 34 17 chr12 75418443 75418560 -68863929 + LTR67 LTR ERVL 428 546 -11 306 250 24 12 chr12 75418606 75418690 -68863799 + MIR3 SINE MIR 103 187 -21 200 197 0 30 chr12 75419125 75419191 -68863298 + (TATG)n Simple_repeat Simple_repeat 2 65 0 23 33 0 0 chr12 75419195 75419225 -68863264 + AT_rich Low_complexity Low_complexity 1 30 0 346 259 50 50 chr12 75419490 75419629 -68862860 - L1ME4a LINE L1 -5 6116 5978 584 303 76 20 chr12 75420088 75420286 -68862203 - MIR SINE MIR -47 215 7 314 330 11 0 chr12 75420511 75420605 -68861884 - MIR3 SINE MIR -14 194 100 567 368 21 39 chr12 75422117 75422402 -68860087 - L2 LINE L2 0 3272 2993 318 200 329 18 chr12 75422420 75422590 -68859899 - MIR SINE MIR -8 254 32 307 222 0 12 chr12 75422590 75422671 -68859818 + L1ME LINE L1 5607 5686 -435 1036 189 125 12 chr12 75422799 75423157 -68859332 - L1MB8 LINE L1 -64 6114 5694 2101 107 0 17 chr12 75423158 75423312 -68859177 - AluY SINE Alu -25 286 138 2276 73 0 3 chr12 75423312 75423333 -68859156 - AluY SINE Alu -9 302 282 213 39 0 0 chr12 75423333 75423359 -68859130 + (TG)n Simple_repeat Simple_repeat 1 26 0 2276 73 0 3 chr12 75423359 75423640 -68858849 - AluY SINE Alu -29 282 1 2101 107 0 17 chr12 75423640 75423776 -68858713 - AluY SINE Alu -173 138 1 467 124 11 0 chr12 75423800 75423889 -68858600 - L1MA4A LINE L1 -23 6280 6191 4633 170 48 8 chr12 75423894 75425566 -68856923 - L1MA4A LINE L1 -180 6123 4376 252 0 0 0 chr12 75425566 75425594 -68856895 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4633 170 48 8 chr12 75425594 75425734 -68856755 - L1MA4A LINE L1 -1927 4376 4243 11055 216 36 53 chr12 75426336 75427390 -68855099 - L1 LINE L1 -1888 4960 3890 258 32 0 0 chr12 75427390 75427421 -68855068 + (TG)n Simple_repeat Simple_repeat 1 31 0 1888 133 3 21 chr12 75427421 75427707 -68854782 - AluSx SINE Alu -31 281 1 11055 216 36 53 chr12 75427707 75429051 -68853438 - L1 LINE L1 -2957 3891 2526 2494 69 0 0 chr12 75429051 75429354 -68853135 - AluY SINE Alu -8 303 1 11055 216 36 53 chr12 75429354 75431879 -68850610 - L1 LINE L1 -4322 2526 1 568 122 84 9 chr12 75431915 75432022 -68850467 + MSTA LTR MaLR 1 115 -313 497 273 15 15 chr12 75432024 75432156 -68850333 + L1M2 LINE L1 1211 1342 -5507 1117 133 91 45 chr12 75432158 75432422 -68850067 + THE1C LTR MaLR 100 375 0 2428 75 16 0 chr12 75432472 75432780 -68849709 + AluSq SINE Alu 1 313 0 562 212 176 63 chr12 75433315 75433730 -68848759 + LTR37B LTR ERV1 7 468 0 180 0 0 0 chr12 75435116 75435136 -68847353 + (TTG)n Simple_repeat Simple_repeat 2 21 0 545 143 10 10 chr12 75435226 75435324 -68847165 + MER4A LTR ERV1 1 98 -566 366 142 25 5 chr12 75435324 75435444 -68847045 + MER4A LTR ERV1 261 441 -223 * 426 143 0 0 chr12 75435434 75435504 -68846985 + MER4A LTR ERV1 593 662 -2 752 184 184 81 chr12 75435734 75436043 -68846446 + LTR48 LTR ERV1 1 341 -446 583 213 0 0 chr12 75436043 75436151 -68846338 - FAM SINE Alu -13 172 65 1182 157 26 13 chr12 75436155 75436484 -68846005 + LTR48B LTR ERV1 324 644 0 2247 105 3 0 chr12 75436522 75436817 -68845672 - AluSg SINE Alu -14 296 1 1491 154 0 5 chr12 75436838 75437059 -68845430 - AluJo SINE Alu -6 306 87 400 312 58 7 chr12 75437323 75437477 -68845012 + MIR3 SINE MIR 16 177 -31 300 242 77 0 chr12 75438369 75438460 -68844029 - MLT1L LTR MaLR -517 98 1 935 68 45 0 chr12 75438643 75438776 -68843713 + MER34B LTR ERV1 1 139 -426 1929 133 36 42 chr12 75438819 75439204 -68843285 + MER34B LTR ERV1 148 530 -35 872 194 100 46 chr12 75439666 75440016 -68842473 + L1M4 LINE L1 4975 5343 -803 * 3159 210 115 84 chr12 75440006 75440660 -68841829 + L1MC3 LINE L1 6416 7048 -737 317 175 21 82 chr12 75440660 75440757 -68841732 + MLT1F1 LTR MaLR 35 125 -442 3159 210 115 84 chr12 75440757 75441334 -68841155 + L1MC3 LINE L1 7048 7785 0 288 240 13 0 chr12 75441558 75441633 -68840856 - U3 snRNA snRNA -133 84 9 2671 35 0 0 chr12 75441633 75441944 -68840545 + AluY SINE Alu 1 311 0 867 118 0 22 chr12 75442399 75442535 -68839954 + FLAM_C SINE Alu 1 133 0 261 0 0 0 chr12 75442538 75442567 -68839922 + (TA)n Simple_repeat Simple_repeat 1 29 0 225 0 0 0 chr12 75442566 75442591 -68839898 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 412 365 71 0 chr12 75442689 75442886 -68839603 - MIR SINE MIR -7 255 45 2595 239 67 18 chr12 75442989 75443815 -68838674 + L1ME1 LINE L1 5296 6161 -5 823 217 29 11 chr12 75444882 75445057 -68837432 + MER45A DNA AcHobo 1 178 0 254 306 35 12 chr12 75445240 75445325 -68837164 - L2 LINE L2 -23 3249 3163 5401 95 26 28 chr12 75445819 75446087 -68836402 - L1PA15 LINE L1 0 6165 5898 1940 147 6 31 chr12 75446087 75446590 -68835899 - AluSx SINE Alu 0 312 1 5401 95 26 28 chr12 75446590 75447180 -68835309 - L1PA15 LINE L1 -267 5898 5297 2394 82 3 0 chr12 75447180 75447484 -68835005 - AluY SINE Alu -6 305 1 5401 95 26 28 chr12 75447484 75447925 -68834564 - L1PA15 LINE L1 -868 5297 4857 679 156 0 0 chr12 75447925 75448034 -68834455 - AluSq/x SINE Alu -204 109 1 1069 183 37 0 chr12 75448034 75448275 -68834214 - L1 LINE L1 -1101 5045 4796 303 189 0 0 chr12 75448276 75448350 -68834139 - L1M4 LINE L1 -953 5193 5120 2144 185 26 33 chr12 75448384 75448653 -68833836 + LTR47A LTR ERVL 1 267 -185 3975 120 11 0 chr12 75448653 75449212 -68833277 + MER61E LTR ERV1 1 565 -4 2144 185 26 33 chr12 75449212 75449397 -68833092 + LTR47A LTR ERVL 267 452 0 287 255 71 21 chr12 75449431 75449572 -68832917 - L1M4 LINE L1 -1096 5050 4903 670 224 0 0 chr12 75449596 75449752 -68832737 - L1P LINE L1 -2641 3505 3350 1831 122 60 104 chr12 75449754 75450223 -68832266 - LTR7 LTR ERV1 -2 448 1 2369 82 45 13 chr12 75450223 75450601 -68831888 - HERVH LTR ERV1 0 7713 7324 395 143 63 0 chr12 75450601 75450664 -68831825 - HERVH LTR ERV1 -1894 5819 5753 2769 113 0 7 chr12 75450668 75451110 -68831379 - HERVH LTR ERV1 -3783 3930 3492 820 142 20 0 chr12 75451100 75451248 -68831241 - HERVH LTR ERV1 -4423 3290 3140 * 18910 92 6 35 chr12 75451242 75454318 -68828171 - HERVH LTR ERV1 -4726 2987 1 1925 128 80 57 chr12 75454320 75454758 -68827731 - LTR7 LTR ERV1 -2 448 1 634 225 25 5 chr12 75454759 75454959 -68827530 - L1P LINE L1 -2793 3353 3150 2768 242 74 15 chr12 75455159 75456054 -68826435 - L1ME1 LINE L1 -5 6161 5216 219 36 0 0 chr12 75456060 75456088 -68826401 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 1870 157 16 16 chr12 75456103 75456415 -68826074 - AluSx SINE Alu 0 312 1 47 53 0 0 chr12 75456473 75456548 -68825941 + AT_rich Low_complexity Low_complexity 1 75 0 2622 124 47 0 chr12 75456548 75456952 -68825537 - L1PA16 LINE L1 -17 6149 5727 405 186 10 41 chr12 75456952 75457049 -68825440 + LTR47B LTR ERVL 187 280 -163 1820 229 30 8 chr12 75457058 75457564 -68824925 - L1ME1 LINE L1 -985 5161 4645 405 54 0 0 chr12 75457574 75457630 -68824859 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 428 154 13 0 chr12 75457634 75457712 -68824777 - AluJ/FRAM SINE Alu -13 299 221 1366 314 28 37 chr12 75457724 75458287 -68824202 + MLT1K LTR MaLR 2 559 -29 2175 92 41 3 chr12 75458319 75458613 -68823876 + AluSc SINE Alu 1 305 -4 1155 238 55 69 chr12 75458710 75459260 -68823229 - MER34 LTR ERV1 0 542 1 198 0 0 0 chr12 75459557 75459579 -68822910 + (TATG)n Simple_repeat Simple_repeat 2 23 0 1890 126 35 18 chr12 75459581 75459867 -68822622 - AluSx SINE Alu -21 291 1 285 29 0 0 chr12 75461789 75461823 -68820666 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3746 97 16 23 chr12 75461846 75462404 -68820085 - MER41A LTR ERV1 0 554 1 277 295 55 38 chr12 75463088 75463271 -68819218 - L1ME1 LINE L1 -1922 4224 4039 2210 106 0 20 chr12 75463429 75463731 -68818758 - AluSc SINE Alu -13 296 1 809 301 58 58 chr12 75463864 75464279 -68818210 - L2 LINE L2 0 3313 2899 30 27 0 0 chr12 75464343 75464380 -68818109 + AT_rich Low_complexity Low_complexity 1 37 0 1765 198 108 8 chr12 75465070 75465469 -68817020 + MER74A LTR ERVL 1 439 -119 257 241 25 0 chr12 75465478 75465557 -68816932 + MER74B LTR ERVL 542 622 0 808 279 39 13 chr12 75465958 75466191 -68816298 + MIR SINE MIR 20 258 -4 1650 137 60 83 chr12 75466289 75466402 -68816087 - MER51B LTR ERV1 0 609 495 2513 82 0 0 chr12 75466402 75466705 -68815784 - AluSx SINE Alu -9 303 1 1650 137 60 83 chr12 75466705 75467060 -68815429 - MER51B LTR ERV1 -114 495 1 1624 166 60 14 chr12 75468005 75468288 -68814201 + AluJo SINE Alu 7 302 -10 718 179 39 39 chr12 75468643 75468822 -68813667 + MER105 DNA DNA 26 204 0 393 284 126 33 chr12 75468946 75469161 -68813328 + MIR SINE MIR 18 252 -10 350 250 88 38 chr12 75469848 75470008 -68812481 - L1ME4a LINE L1 -2 6119 5952 3708 144 44 81 chr12 75470011 75470812 -68811677 + MER4E LTR ERV1 1 771 -8 2404 149 20 0 chr12 75470951 75471346 -68811143 + MER57A LTR ERV1 1 403 0 2644 229 115 39 chr12 75471346 75471550 -68810939 + L1MC4a LINE L1 4969 4297 -1849 243 0 0 0 chr12 75471550 75471577 -68810912 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2644 229 115 39 chr12 75471577 75472643 -68809846 + L1MC4a LINE L1 4296 5279 -867 1449 199 77 22 chr12 75472666 75473032 -68809457 - MSTD LTR MaLR -8 388 3 4386 247 81 74 chr12 75473039 75474673 -68807816 - MSTD-int LTR MaLR -5 1646 1 1507 197 42 71 chr12 75474675 75475081 -68807408 - MSTD LTR MaLR -2 394 1 1405 256 51 30 chr12 75475081 75475629 -68806860 + MLT1E3 LTR MaLR 24 624 0 3736 248 120 35 chr12 75475667 75476210 -68806279 + L1MC4 LINE L1 6373 6869 -1173 1768 157 38 0 chr12 75476210 75476497 -68805992 + AluSx SINE Alu 1 298 -14 3736 248 120 35 chr12 75476497 75477487 -68805002 + L1MC4 LINE L1 6869 8036 -6 471 269 113 25 chr12 75477489 75477771 -68804718 - L1ME4a LINE L1 -258 5863 5557 10734 192 10 19 chr12 75477963 75480794 -68801695 - L1PA15 LINE L1 -14 6151 3346 2636 48 0 0 chr12 75480794 75481104 -68801385 + AluY SINE Alu 1 310 -1 10734 192 10 19 chr12 75481104 75481427 -68801062 - L1PA15 LINE L1 -2819 3346 3022 29 28 0 0 chr12 75481511 75481547 -68800942 + AT_rich Low_complexity Low_complexity 1 36 0 662 249 94 15 chr12 75481882 75482083 -68800406 - MLT1I LTR MaLR -192 217 1 2553 188 2 7 chr12 75482808 75483250 -68799239 - MLT1C LTR MaLR 0 467 28 234 318 134 11 chr12 75483471 75483590 -68798899 - MIR SINE MIR -71 137 6 183 162 0 0 chr12 75483617 75483654 -68798835 + (TAA)n Simple_repeat Simple_repeat 1 37 0 613 231 20 7 chr12 75483968 75484115 -68798374 - MIR SINE MIR -3 259 111 599 309 29 6 chr12 75484249 75484424 -68798065 + MIR SINE MIR 12 190 -72 1775 152 22 4 chr12 75484580 75484857 -68797632 + AluSx SINE Alu 7 288 -24 656 324 14 0 chr12 75486758 75486965 -68795524 - LTR16A LTR ERVL -76 374 165 26 0 0 0 chr12 75487645 75487671 -68794818 + AT_rich Low_complexity Low_complexity 1 26 0 4204 52 0 28 chr12 75487768 75488330 -68794159 - L1P3 LINE L1 -4255 1891 1352 2680 26 0 0 chr12 75488330 75488641 -68793848 + L1PA5 LINE L1 5837 6147 -7 525 291 131 0 chr12 75489171 75489377 -68793112 - MIR SINE MIR 0 262 30 233 159 0 23 chr12 75489438 75489482 -68793007 - LTR16A1 LTR ERVL 0 457 415 600 258 5 59 chr12 75490576 75490762 -68791727 - LTR67 LTR ERVL -379 178 3 25 0 0 0 chr12 75491201 75491226 -68791263 + AT_rich Low_complexity Low_complexity 1 25 0 438 296 62 19 chr12 75491312 75491474 -68791015 - MIR SINE MIR -74 188 20 455 301 34 7 chr12 75491724 75491940 -68790549 - L1MC4a LINE L1 -165 5956 5732 511 284 102 14 chr12 75492299 75492514 -68789975 - MIR SINE MIR -18 244 11 479 317 49 108 chr12 75492687 75493056 -68789433 + L2 LINE L2 2926 3272 0 618 345 70 42 chr12 75493894 75494251 -68788238 - L2 LINE L2 -22 3250 2884 356 303 76 7 chr12 75494355 75494500 -68787989 + LTR33A LTR ERVL 88 242 -281 483 328 59 24 chr12 75494982 75495235 -68787254 - MIR SINE MIR 0 262 1 198 71 0 0 chr12 75495900 75495928 -68786561 + (TAA)n Simple_repeat Simple_repeat 1 28 0 3523 279 94 31 chr12 75496660 75497374 -68785115 + L2 LINE L2 622 1290 -2024 323 0 0 45 chr12 75497374 75497418 -68785071 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 3523 279 94 31 chr12 75497418 75497613 -68784876 + L2 LINE L2 1290 1471 -1843 2663 33 0 0 chr12 75497613 75497916 -68784573 - AluY SINE Alu -6 305 3 3523 279 94 31 chr12 75497916 75498035 -68784454 + L2 LINE L2 1471 1581 -1733 2015 104 3 35 chr12 75498035 75498354 -68784135 + AluSx SINE Alu 4 313 0 3523 279 94 31 chr12 75498354 75498630 -68783859 + L2 LINE L2 1581 2011 -1303 872 125 0 22 chr12 75498643 75498779 -68783710 - AluSq/x SINE Alu -179 133 1 408 292 33 8 chr12 75498807 75498927 -68783562 + L2 LINE L2 3191 3313 0 * 631 298 47 39 chr12 75498924 75499182 -68783307 + MIR SINE MIR 3 262 0 22 80 0 0 chr12 75499301 75499351 -68783138 + AT_rich Low_complexity Low_complexity 1 50 0 820 279 128 21 chr12 75501049 75501580 -68780909 - HAL1 LINE L1 -121 2386 1799 878 211 75 9 chr12 75501583 75501811 -68780678 - HAL1 LINE L1 -741 1766 1524 477 228 26 9 chr12 75501816 75501930 -68780559 - HAL1 LINE L1 -1099 1408 1293 2502 65 0 3 chr12 75502000 75502308 -68780181 + AluY SINE Alu 1 307 -4 22 0 0 0 chr12 75502405 75502427 -68780062 + AT_rich Low_complexity Low_complexity 1 22 0 320 0 25 0 chr12 75503013 75503053 -68779436 + (TG)n Simple_repeat Simple_repeat 2 42 0 187 289 12 84 chr12 75503655 75503738 -68778751 - L2 LINE L2 0 3272 3196 5207 207 60 50 chr12 75504649 75507237 -68775252 - L1MDa LINE L1 -2885 3655 1025 213 304 76 0 chr12 75509598 75509690 -68772799 + MIR SINE MIR 125 223 -39 309 26 0 0 chr12 75510283 75510321 -68772168 + (TG)n Simple_repeat Simple_repeat 2 39 0 3744 138 14 101 chr12 75511013 75511871 -68770618 + LTR1 LTR ERV1 2 784 -1 431 230 9 26 chr12 75511871 75511981 -68770508 + LTR67 LTR ERVL 390 497 -60 183 42 0 0 chr12 75512136 75512160 -68770329 + (TG)n Simple_repeat Simple_repeat 2 25 0 607 232 4 7 chr12 75512160 75512441 -68770048 + (TA)n Simple_repeat Simple_repeat 1 279 0 3554 99 26 31 chr12 75512957 75513540 -68768949 - L1MA4A LINE L1 0 6303 5724 9715 158 30 92 chr12 75513545 75514595 -68767894 - L1MA4A LINE L1 -755 5391 4278 569 211 14 54 chr12 75514595 75514742 -68767747 - FLAM_A SINE Alu -1 141 1 9715 158 30 92 chr12 75514742 75516064 -68766425 - L1MA4A LINE L1 -1868 4278 3028 5338 108 16 7 chr12 75516082 75516903 -68765586 - L1MA2 LINE L1 -6 6298 5471 803 238 28 0 chr12 75516915 75517096 -68765393 - L1MA4A LINE L1 -3404 2742 2557 16073 170 13 18 chr12 75517100 75517822 -68764667 - L1M1 LINE L1 -743 6822 6098 2088 122 3 7 chr12 75517822 75518109 -68764380 - AluSx SINE Alu -26 286 1 16073 170 13 18 chr12 75518109 75521048 -68761441 - L1M1 LINE L1 -1467 6098 3215 * 43731 34 21 1 chr12 75521028 75521050 -68761439 - L1PA2 LINE L1 -1 6154 6134 239 64 0 43 chr12 75521050 75521097 -68761392 + (TTTTA)n Simple_repeat Simple_repeat 1 80 0 43731 34 21 1 chr12 75521097 75527091 -68755398 - L1PA2 LINE L1 -21 6134 15 19139 145 45 7 chr12 75527095 75528494 -68753995 - L1M1 LINE L1 -4346 3219 1874 270 0 0 0 chr12 75528494 75528524 -68753965 + (TC)n Simple_repeat Simple_repeat 2 31 0 19139 145 45 7 chr12 75528524 75530212 -68752277 - L1M1 LINE L1 -5691 1874 15 14915 185 20 36 chr12 75530207 75531568 -68750921 - L1 LINE L1 -3105 3743 2362 * 2083 147 3 0 chr12 75531568 75531868 -68750621 - AluSx SINE Alu -11 301 1 14915 185 20 36 chr12 75531868 75531925 -68750564 - L1 LINE L1 -4486 2362 2306 2133 196 64 7 chr12 75531925 75532334 -68750155 - MSTB1 LTR MaLR 0 432 1 14915 185 20 36 chr12 75532334 75534629 -68747860 - L1 LINE L1 -4542 2306 85 2128 132 7 3 chr12 75535365 75535675 -68746814 - AluSx SINE Alu -1 311 1 257 262 0 0 chr12 75536233 75536294 -68746195 + L2 LINE L2 3249 3309 -4 214 35 0 88 chr12 75537009 75537066 -68745423 + (TCC)n Simple_repeat Simple_repeat 2 53 0 316 266 147 83 chr12 75538641 75538893 -68743596 + MLT1K LTR MaLR 300 567 -21 809 251 43 26 chr12 75539105 75539336 -68743153 - MIR SINE MIR -27 235 1 393 219 95 19 chr12 75539937 75540042 -68742447 + L2 LINE L2 3201 3313 0 352 311 0 73 chr12 75540092 75540243 -68742246 + MIR SINE MIR 9 148 -114 2060 209 199 9 chr12 75540243 75540908 -68741581 + LTR50 LTR ERVL 1 791 -4 314 218 198 0 chr12 75540908 75541009 -68741480 + MIR SINE MIR 138 258 -4 632 246 11 17 chr12 75541262 75541437 -68741052 - MER104 DNA Tc2 -4 176 3 300 91 0 0 chr12 75541544 75541588 -68740901 + (CA)n Simple_repeat Simple_repeat 2 45 0 987 56 16 0 chr12 75542039 75542164 -68740325 - AluSg/x SINE Alu -12 300 174 198 0 0 0 chr12 75542285 75542307 -68740182 + (A)n Simple_repeat Simple_repeat 1 22 0 1035 142 0 0 chr12 75542556 75542737 -68739752 - AluSg/x SINE Alu 0 317 137 246 266 160 32 chr12 75543034 75543128 -68739361 - L2 LINE L2 -18 3295 3190 230 235 88 0 chr12 75543229 75543297 -68739192 + L2 LINE L2 2924 2997 -316 643 236 49 54 chr12 75543677 75543880 -68738609 - MER63A DNA MER1_type -4 206 5 1783 203 15 0 chr12 75544046 75544376 -68738113 - MER58B DNA MER1_type 0 341 7 1135 53 0 0 chr12 75544462 75544594 -68737895 + AluY SINE Alu 1 132 -179 3558 274 62 40 chr12 75544657 75544886 -68737603 - L2 LINE L2 -1376 1938 1715 2015 104 3 35 chr12 75544886 75545205 -68737284 - AluSx SINE Alu 0 313 4 3558 274 62 40 chr12 75545205 75545321 -68737168 - L2 LINE L2 -1599 1715 1603 2691 33 0 0 chr12 75545321 75545624 -68736865 + AluY SINE Alu 1 303 -8 3558 274 62 40 chr12 75545624 75546565 -68735924 - L2 LINE L2 -1711 1603 622 198 71 0 0 chr12 75547297 75547325 -68735164 + (TTA)n Simple_repeat Simple_repeat 1 28 0 474 324 59 24 chr12 75547990 75548243 -68734246 + MIR SINE MIR 1 262 0 353 303 76 7 chr12 75548725 75548870 -68733619 - LTR33A LTR ERVL -281 242 88 566 347 70 42 chr12 75548974 75549331 -68733158 + L2 LINE L2 2884 3250 -22 476 317 49 108 chr12 75550169 75550538 -68731951 - L2 LINE L2 0 3272 2926 492 285 105 10 chr12 75550711 75550911 -68731578 + MIR SINE MIR 11 229 -33 459 310 60 28 chr12 75551285 75551501 -68730988 + L1MC4a LINE L1 5732 5956 -165 452 296 62 19 chr12 75551751 75551913 -68730576 + MIR SINE MIR 20 188 -74 24 0 0 0 chr12 75551999 75552023 -68730466 + AT_rich Low_complexity Low_complexity 1 24 0 586 263 5 59 chr12 75552462 75552648 -68729841 + LTR67 LTR ERVL 3 178 -379 524 286 131 0 chr12 75553847 75554053 -68728436 + MIR SINE MIR 30 262 0 2842 29 0 0 chr12 75554583 75554894 -68727595 - L1PA5 LINE L1 -7 6147 5837 4298 50 0 28 chr12 75554894 75555456 -68727033 + L1P3 LINE L1 1667 2206 -4255 26 0 0 0 chr12 75555553 75555579 -68726910 + AT_rich Low_complexity Low_complexity 1 26 0 674 319 14 0 chr12 75556257 75556464 -68726025 + LTR16A LTR ERVL 165 374 -76 1824 165 20 3 chr12 75558345 75558648 -68723841 - AluSx SINE Alu -4 308 1 602 303 29 6 chr12 75558798 75558973 -68723516 - MIR SINE MIR -72 190 12 629 309 44 0 chr12 75559754 75560048 -68722441 + AluY SINE Alu 5 311 0 1288 94 0 0 chr12 75560049 75560250 -68722239 + AluY SINE Alu 119 311 0 537 296 132 12 chr12 75560579 75560822 -68721667 + L2 LINE L2 2954 3225 -88 222 281 141 33 chr12 75561088 75561209 -68721280 + MIR SINE MIR 124 257 -5 2432 88 3 0 chr12 75561755 75562060 -68720429 - AluSp SINE Alu -7 306 1 24 0 0 0 chr12 75563087 75563111 -68719378 + AT_rich Low_complexity Low_complexity 1 24 0 2335 84 0 3 chr12 75563479 75563775 -68718714 - AluSp SINE Alu -18 295 1 817 196 125 0 chr12 75564398 75564582 -68717907 + L1P LINE L1 4706 4912 -1234 22 0 0 0 chr12 75564991 75565013 -68717476 + AT_rich Low_complexity Low_complexity 1 22 0 364 332 72 26 chr12 75565015 75565208 -68717281 - L1ME3A LINE L1 -7 6163 5962 258 225 38 25 chr12 75565546 75565626 -68716863 + LTR67 LTR ERVL 471 551 -6 1546 272 32 56 chr12 75565669 75566236 -68716253 + L1MCb LINE L1 3 555 -5490 860 270 94 13 chr12 75566336 75566654 -68715835 + L1MCb LINE L1 558 901 -5144 932 197 65 39 chr12 75566658 75566735 -68715754 + L1MCb LINE L1 1522 1596 -4968 375 63 25 101 chr12 75566735 75566814 -68715675 + L1PB4 LINE L1 6078 6150 -6 932 197 65 39 chr12 75566814 75567015 -68715474 + L1MCb LINE L1 1596 1807 -4757 262 287 8 41 chr12 75567026 75567148 -68715341 + L1MEd LINE L1 23 140 -5979 1137 271 106 60 chr12 75567269 75568309 -68714180 + L1MEd LINE L1 312 1506 -4804 776 184 0 16 chr12 75568309 75568434 -68714055 + FLAM_A SINE Alu 1 123 -10 1137 271 106 60 chr12 75568434 75568605 -68713884 + L1MEd LINE L1 1506 1668 -4642 390 251 87 56 chr12 75569776 75570007 -68712482 + L1M4 LINE L1 4920 5157 -989 448 148 23 57 chr12 75570013 75570101 -68712388 - AluJ/FRAM SINE Alu -11 301 217 549 220 0 17 chr12 75570101 75570219 -68712270 - L1PA8A LINE L1 0 6131 6016 501 90 0 13 chr12 75570219 75570297 -68712192 - L1PA10 LINE L1 -115 6053 5977 596 148 0 0 chr12 75570310 75570391 -68712098 - AluJ/FLAM SINE Alu -230 82 2 640 294 16 11 chr12 75570501 75570685 -68711804 + MIR SINE MIR 2 186 -76 2654 194 4 47 chr12 75570872 75571402 -68711087 + MLT2B2 LTR ERVL 1 507 -8 546 202 80 64 chr12 75571984 75572089 -68710400 - L2 LINE L2 -648 2666 2555 2157 113 3 47 chr12 75572089 75572408 -68710081 + AluSx SINE Alu 1 305 -7 546 202 80 64 chr12 75572408 75572490 -68709999 - L2 LINE L2 -759 2555 2476 828 282 74 36 chr12 75572490 75573044 -68709445 + HAL1 LINE L1 1811 2385 -122 6875 61 6 0 chr12 75573137 75574574 -68707915 - L1PA6 LINE L1 -6 6148 4703 308 222 16 0 chr12 75574578 75574641 -68707848 - MER5A DNA MER1_type -74 115 52 1432 158 5 0 chr12 75574645 75574866 -68707623 + AluJb SINE Alu 85 306 -6 231 234 0 0 chr12 75574869 75574916 -68707573 - MER5A DNA MER1_type -136 53 7 854 213 6 0 chr12 75574999 75575173 -68707316 - MER5B DNA MER1_type -2 176 2 532 233 7 41 chr12 75575305 75575451 -68707038 + MIR3 SINE MIR 66 206 -2 30 59 0 0 chr12 75575506 75575557 -68706932 + AT_rich Low_complexity Low_complexity 1 51 0 3374 142 19 57 chr12 75575904 75576532 -68705957 - MER6A DNA MER2_type -1 604 1 2348 75 7 0 chr12 75576644 75576938 -68705551 + AluY SINE Alu 2 297 -14 21 0 0 0 chr12 75577971 75577992 -68704497 + AT_rich Low_complexity Low_complexity 1 21 0 296 360 0 24 chr12 75578065 75578190 -68704299 - MIR SINE MIR -74 188 67 212 338 0 0 chr12 75578246 75578317 -68704172 - MIR SINE MIR -7 255 185 707 257 64 5 chr12 75578411 75578598 -68703891 - MIR SINE MIR -1 261 64 1039 32 0 0 chr12 75578722 75578848 -68703641 - L1PA3 LINE L1 0 6155 6030 647 274 215 8 chr12 75579541 75580015 -68702474 + MLT1G1 LTR MaLR 1 572 -23 1835 206 131 10 chr12 75580202 75580712 -68701777 + L1ME1 LINE L1 5590 6161 -5 558 106 0 24 chr12 75580934 75581019 -68701470 - AluJo SINE Alu -10 302 220 761 192 17 52 chr12 75581020 75581192 -68701297 - AluJo SINE Alu -146 166 1 556 279 0 0 chr12 75581398 75581556 -68700933 - L1MEc LINE L1 -4583 1813 1656 198 0 0 0 chr12 75581697 75581719 -68700770 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 423 275 14 9 chr12 75582187 75582332 -68700157 - MIR SINE MIR -65 143 5 220 141 31 31 chr12 75582903 75582967 -68699522 + (TA)n Simple_repeat Simple_repeat 2 65 0 925 70 0 31 chr12 75583308 75583437 -68699052 - SVA Other Other -1 1385 1261 495 312 115 26 chr12 75585610 75586001 -68696488 + L2 LINE L2 2118 2543 -771 1276 107 58 5 chr12 75586002 75586207 -68696282 + MER30 DNA MER1_type 14 229 -1 326 240 140 0 chr12 75586308 75586408 -68696081 - MER103 DNA DNA -1 165 52 1844 191 19 8 chr12 75586868 75587229 -68695260 + MLT1A1 LTR MaLR 1 365 0 2101 132 0 0 chr12 75589365 75589661 -68692828 + AluSx SINE Alu 1 296 -16 767 281 45 53 chr12 75591711 75592127 -68690362 + L1MEc LINE L1 1430 1848 -4548 1546 194 4 0 chr12 75592127 75592395 -68690094 + AluJo SINE Alu 5 273 -39 190 29 57 29 chr12 75592405 75592440 -68690049 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 767 281 45 53 chr12 75592440 75592635 -68689854 + L1MEc LINE L1 1857 2047 -4349 332 229 25 98 chr12 75592661 75592783 -68689706 + L1MEc LINE L1 2079 2191 -4024 2100 178 70 11 chr12 75592792 75593231 -68689258 + Tigger7 DNA MER2_type 4 468 -2019 1386 117 36 0 chr12 75593231 75593453 -68689036 - MER30 DNA MER1_type 0 230 1 382 143 0 0 chr12 75593453 75593515 -68688974 + Tigger7 DNA MER2_type 460 521 -212 494 191 0 0 chr12 75593514 75593598 -68688891 + Tigger7 DNA MER2_type 2400 2483 -8 915 243 79 72 chr12 75593609 75593669 -68688820 + L1MEc LINE L1 2200 2258 -3957 1621 173 14 58 chr12 75593669 75593798 -68688691 + AluJo SINE Alu 1 134 -178 2201 113 0 0 chr12 75593798 75594090 -68688399 + AluSg SINE Alu 1 292 -18 1621 173 14 58 chr12 75594090 75594255 -68688234 + AluJo SINE Alu 134 282 -30 915 243 79 72 chr12 75594255 75594638 -68687851 + L1MEc LINE L1 2258 2646 -3569 415 231 96 84 chr12 75594852 75595065 -68687424 + HAL1 LINE L1 2134 2354 -153 2380 72 13 13 chr12 75595065 75595369 -68687120 + AluY SINE Alu 1 304 -7 415 231 96 84 chr12 75595369 75595510 -68686979 + HAL1 LINE L1 2354 2492 -15 304 289 15 44 chr12 75595883 75596018 -68686471 + HAL1 LINE L1 1932 2062 -445 1217 100 199 79 chr12 75596256 75596497 -68685992 + AluSg SINE Alu 38 307 -3 253 139 236 0 chr12 75597075 75597147 -68685342 + L2 LINE L2 3039 3127 -186 816 195 7 0 chr12 75597211 75597360 -68685129 + MER97a DNA MER1_type? 2 151 -743 228 158 0 0 chr12 75597424 75597462 -68685027 + L2 LINE L2 3212 3249 -64 558 253 0 0 chr12 75597572 75597746 -68684743 + (TG)n Simple_repeat Simple_repeat 1 174 0 536 316 47 43 chr12 75598053 75598184 -68684305 - MIR SINE MIR -14 248 114 2315 94 0 25 chr12 75598184 75598502 -68683987 + AluSg SINE Alu 1 310 0 536 316 47 43 chr12 75598502 75598604 -68683885 - MIR SINE MIR -148 114 14 573 195 71 26 chr12 75599607 75599761 -68682728 - MER103 DNA DNA -4 162 2 216 0 0 0 chr12 75600046 75600070 -68682419 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 502 259 101 101 chr12 75600495 75600723 -68681766 + MIR SINE MIR 20 247 -15 2073 184 104 16 chr12 75600919 75601543 -68680946 + MER39 LTR ERV1 8 704 -3 444 19 0 0 chr12 75601907 75601960 -68680529 + (TG)n Simple_repeat Simple_repeat 2 54 0 2490 256 40 30 chr12 75602151 75603141 -68679348 + L1MDa LINE L1 1362 2361 -4179 * 15812 26 0 0 chr12 75603136 75605709 -68676780 + L1PA3 LINE L1 3442 6014 -141 859 124 8 0 chr12 75606398 75606527 -68675962 - FLAM_C SINE Alu 0 143 14 312 278 33 20 chr12 75607307 75607458 -68675031 + GA-rich Low_complexity Low_complexity 5 157 0 241 257 40 14 chr12 75607615 75607689 -68674800 - MIR SINE MIR 0 262 187 349 274 88 98 chr12 75607728 75607943 -68674546 + MIR SINE MIR 48 260 -2 * 558 283 29 54 chr12 75607917 75608122 -68674367 - MIR SINE MIR -43 219 20 429 167 0 49 chr12 75609423 75609525 -68672964 + L1MA9 LINE L1 6216 6312 0 187 364 57 0 chr12 75609693 75609781 -68672708 - MIR SINE MIR -80 182 90 319 258 125 16 chr12 75609853 75609981 -68672508 + MIR SINE MIR 66 207 -55 306 0 0 0 chr12 75610184 75610218 -68672271 + (TG)n Simple_repeat Simple_repeat 2 35 0 1327 169 88 27 chr12 75610220 75610358 -68672131 - AluJb SINE Alu -36 276 148 180 0 0 0 chr12 75610358 75610378 -68672111 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1327 169 88 27 chr12 75610378 75610499 -68671990 - AluJb SINE Alu -164 148 1 1690 150 6 105 chr12 75612062 75612255 -68670234 + MLT1B LTR MaLR 1 136 -260 2405 86 3 3 chr12 75612255 75612558 -68669931 + AluSp SINE Alu 1 303 -10 1690 150 6 105 chr12 75612558 75612794 -68669695 + MLT1B LTR MaLR 136 394 -2 390 273 154 14 chr12 75613226 75613369 -68669120 - L3 LINE CR1 -109 1468 1306 216 307 293 0 chr12 75614020 75614160 -68668329 - MIR SINE MIR -80 182 2 1675 60 21 34 chr12 75614214 75614447 -68668042 + MER30 DNA MER1_type 1 230 0 298 276 130 0 chr12 75614869 75614992 -68667497 + L2 LINE L2 3174 3312 -1 290 373 67 13 chr12 75617114 75617264 -68665225 + MIR3 SINE MIR 3 160 -48 2592 30 3 0 chr12 75617984 75618279 -68664210 - AluY SINE Alu -15 296 1 440 315 20 25 chr12 75618321 75618524 -68663965 - MIR SINE MIR -41 221 20 2575 37 0 0 chr12 75618869 75619168 -68663321 - AluY SINE Alu -12 299 1 313 186 29 118 chr12 75619674 75619776 -68662713 + MIR SINE MIR 100 192 -70 34 19 0 19 chr12 75619923 75619946 -68662543 + AT_rich Low_complexity Low_complexity 1 23 -28 1535 115 0 5 chr12 75619946 75620155 -68662334 + AluSg/x SINE Alu 81 288 -24 34 19 0 19 chr12 75620155 75620183 -68662306 + AT_rich Low_complexity Low_complexity 23 51 0 939 128 82 15 chr12 75620610 75620806 -68661683 - L1MC2 LINE L1 0 6344 6136 1480 126 0 65 chr12 75620809 75620943 -68661546 - L1MC3 LINE L1 -183 7602 7461 306 67 0 0 chr12 75620943 75620988 -68661501 + (TTG)n Simple_repeat Simple_repeat 1 45 0 2221 106 3 0 chr12 75620995 75621297 -68661192 - AluSp SINE Alu -10 303 1 1480 126 0 65 chr12 75621297 75621432 -68661057 - L1MC3 LINE L1 -330 7455 7343 1498 196 9 40 chr12 75622196 75622518 -68659971 + AluJo SINE Alu 1 312 0 2271 83 30 10 chr12 75622567 75622869 -68659620 - AluSq SINE Alu -5 308 1 390 315 144 18 chr12 75623027 75623249 -68659240 - MIR SINE MIR 0 262 13 1309 206 20 24 chr12 75623553 75623849 -68658640 - MER74A LTR ERVL -2 556 262 25602 38 0 0 chr12 75625360 75629080 -68653409 + L1PA3 LINE L1 2430 6155 0 1261 60 0 0 chr12 75629119 75629269 -68653220 + L1PA7 LINE L1 6001 6150 -4 323 178 0 27 chr12 75629269 75629342 -68653147 + L1MA4 LINE L1 6187 6257 -43 3825 110 70 10 chr12 75629375 75630002 -68652487 + Tigger3(Golem) DNA MER2_type 2365 3029 0 2649 39 3 0 chr12 75630088 75630393 -68652096 + AluY SINE Alu 1 306 -5 259 328 17 50 chr12 75630498 75630617 -68651872 - MIR SINE MIR -141 121 7 22 35 0 0 chr12 75630846 75630875 -68651614 + AT_rich Low_complexity Low_complexity 1 29 0 2061 124 0 36 chr12 75631312 75631619 -68650870 + AluSx SINE Alu 1 296 -16 898 286 58 38 chr12 75632128 75632576 -68649913 + L1ME1 LINE L1 5454 5921 -245 2128 125 3 0 chr12 75632939 75633234 -68649255 - AluSg SINE Alu -14 296 1 382 332 116 25 chr12 75634562 75634881 -68647608 - L1ME LINE L1 -318 5848 5501 247 222 19 0 chr12 75635075 75635129 -68647360 - L2 LINE L2 -2 3311 3257 509 235 8 8 chr12 75635281 75635400 -68647089 + L2 LINE L2 3193 3311 -2 254 306 48 97 chr12 75635756 75635951 -68646538 + MIR SINE MIR 13 195 -67 357 146 244 0 chr12 75636073 75636155 -68646334 + MIR SINE MIR 160 261 -1 521 223 27 0 chr12 75636163 75636275 -68646214 - MIR SINE MIR -114 148 34 213 39 0 0 chr12 75636479 75636505 -68645984 + (CA)n Simple_repeat Simple_repeat 2 27 0 339 253 149 0 chr12 75637059 75637146 -68645343 + L2 LINE L2 3193 3292 -21 1481 275 80 12 chr12 75637147 75637663 -68644826 + MER45C DNA AcHobo 1 551 -402 1759 87 16 8 chr12 75637722 75637964 -68644525 + L1MA2 LINE L1 6052 6295 -9 489 231 19 0 chr12 75637978 75638086 -68644403 + MER45C DNA AcHobo 844 953 0 407 263 64 152 chr12 75638717 75639124 -68643365 - MLT1J1 LTR MaLR 0 446 76 292 161 86 37 chr12 75639248 75639329 -68643160 + MIR SINE MIR 44 128 -134 242 143 0 24 chr12 75639330 75639372 -68643117 - MLT1J1 LTR MaLR -381 65 25 231 260 0 0 chr12 75639430 75639480 -68643009 + L2 LINE L2 3263 3312 -1 609 184 16 32 chr12 75640405 75640530 -68641959 - Charlie1 DNA MER1_type -1219 1542 1420 320 271 33 86 chr12 75641120 75641271 -68641218 - MIR SINE MIR -74 188 46 286 250 0 28 chr12 75641948 75642020 -68640469 - MIR SINE MIR -176 86 17 488 289 31 40 chr12 75642239 75642467 -68640022 - MLT1K LTR MaLR -36 552 327 617 297 22 6 chr12 75643481 75643663 -68638826 + MIR SINE MIR 12 196 -66 704 234 44 97 chr12 75643663 75643984 -68638505 + MER34B LTR ERV1 1 304 -261 444 196 98 112 chr12 75644011 75644287 -68638202 + MER34 LTR ERV1 271 542 0 462 237 21 0 chr12 75644546 75644643 -68637846 - MIR SINE MIR -94 168 70 595 315 73 18 chr12 75645711 75646116 -68636373 + MER115 DNA AcHobo 1 456 -237 250 254 18 18 chr12 75646109 75646164 -68636325 + MER115 DNA AcHobo 639 693 0 * 369 0 0 0 chr12 75647416 75647457 -68635032 + (TG)n Simple_repeat Simple_repeat 1 41 0 822 214 222 24 chr12 75648119 75648489 -68634000 + HAL1 LINE L1 2059 2501 -6 1756 161 32 0 chr12 75649862 75650147 -68632342 + AluJb SINE Alu 1 294 -18 520 281 222 0 chr12 75650186 75650389 -68632100 - MIR SINE MIR -7 255 8 221 333 50 8 chr12 75650563 75650683 -68631806 + L3 LINE CR1 647 771 -806 248 117 250 0 chr12 75650730 75650790 -68631699 + MER63 DNA MER1_type 1 701 -135 256 315 85 23 chr12 75650885 75651015 -68631474 + MIR SINE MIR 75 212 -50 573 245 164 0 chr12 75651032 75651191 -68631298 + MER5A DNA MER1_type 4 188 -1 2313 71 0 0 chr12 75651289 75651571 -68630918 + AluY SINE Alu 30 311 0 2575 104 38 11 chr12 75651787 75652152 -68630337 + THE1C LTR MaLR 1 375 0 2695 125 67 0 chr12 75652221 75652622 -68629867 - MSTA LTR MaLR 0 428 1 338 74 19 0 chr12 75652939 75652993 -68629496 + (CA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr12 75654391 75654412 -68628077 + AT_rich Low_complexity Low_complexity 1 21 0 319 334 123 15 chr12 75654969 75655150 -68627339 + MIR SINE MIR 2 200 -62 1719 272 51 25 chr12 75655944 75656492 -68625997 - MLT1K LTR MaLR -1 587 26 240 267 27 27 chr12 75657255 75657318 -68625171 + L2 LINE L2 3238 3303 -10 258 81 0 0 chr12 75657318 75657355 -68625134 + (TGAG)n Simple_repeat Simple_repeat 3 39 0 240 267 27 27 chr12 75657355 75657366 -68625123 + L2 LINE L2 3302 3312 -1 26 0 0 0 chr12 75657958 75657984 -68624505 + AT_rich Low_complexity Low_complexity 1 26 0 2714 29 3 10 chr12 75658297 75658610 -68623879 - AluY SINE Alu 0 311 1 418 315 20 25 chr12 75658652 75658855 -68623634 - MIR SINE MIR -41 221 20 2596 40 0 0 chr12 75659200 75659499 -68622990 - AluY SINE Alu -12 299 1 308 186 29 118 chr12 75660009 75660111 -68622378 + MIR SINE MIR 100 192 -70 34 19 0 19 chr12 75660258 75660281 -68622208 + AT_rich Low_complexity Low_complexity 1 23 -28 1534 115 0 5 chr12 75660281 75660490 -68621999 + AluSg/x SINE Alu 79 286 -24 34 19 0 19 chr12 75660490 75660518 -68621971 + AT_rich Low_complexity Low_complexity 23 51 0 1044 128 82 15 chr12 75660945 75661141 -68621348 - L1MC2 LINE L1 0 6344 6136 1618 124 3 72 chr12 75661144 75661278 -68621211 - L1MC3 LINE L1 -183 7602 7460 258 56 0 0 chr12 75661278 75661314 -68621175 + (TTG)n Simple_repeat Simple_repeat 1 36 0 2226 106 3 0 chr12 75661321 75661623 -68620866 - AluSp SINE Alu -10 303 1 1618 124 3 72 chr12 75661623 75661770 -68620719 - L1MC3 LINE L1 -331 7454 7333 1498 196 9 40 chr12 75662522 75662844 -68619645 + AluJo SINE Alu 1 312 0 2271 83 30 10 chr12 75662893 75663195 -68619294 - AluSq SINE Alu -5 308 1 390 315 144 18 chr12 75663353 75663575 -68618914 - MIR SINE MIR 0 262 13 1309 206 20 24 chr12 75663879 75664175 -68618314 - MER74A LTR ERVL -2 556 262 854 124 8 0 chr12 75665760 75665889 -68616600 - FLAM_C SINE Alu 0 143 14 312 278 33 20 chr12 75666669 75666820 -68615669 + GA-rich Low_complexity Low_complexity 5 157 0 239 257 40 14 chr12 75666977 75667051 -68615438 - MIR SINE MIR 0 262 187 333 273 88 102 chr12 75667090 75667306 -68615183 + MIR SINE MIR 48 260 -2 551 294 37 12 chr12 75667322 75667485 -68615004 - MIR SINE MIR -76 186 20 480 167 0 49 chr12 75668786 75668888 -68613601 + L1MA9 LINE L1 6216 6312 0 183 364 57 0 chr12 75669056 75669144 -68613345 - MIR SINE MIR -80 182 90 308 258 125 16 chr12 75669216 75669344 -68613145 + MIR SINE MIR 66 207 -55 306 0 0 0 chr12 75669547 75669581 -68612908 + (TG)n Simple_repeat Simple_repeat 2 35 0 1316 169 88 27 chr12 75669583 75669721 -68612768 - AluJb SINE Alu -36 276 148 180 0 0 0 chr12 75669721 75669741 -68612748 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1316 169 88 27 chr12 75669741 75669862 -68612627 - AluJb SINE Alu -164 148 1 1865 150 6 105 chr12 75671425 75671618 -68610871 + MLT1B LTR MaLR 1 136 -260 2414 86 3 3 chr12 75671618 75671922 -68610567 + AluSp SINE Alu 1 304 -9 1865 150 6 105 chr12 75671922 75672158 -68610331 + MLT1B LTR MaLR 136 394 -2 395 273 154 14 chr12 75672590 75672733 -68609756 - L3 LINE CR1 -109 1468 1306 208 307 293 0 chr12 75673384 75673524 -68608965 - MIR SINE MIR -80 182 2 1801 60 22 30 chr12 75673578 75673810 -68608679 + MER30 DNA MER1_type 1 230 0 300 276 130 0 chr12 75674232 75674355 -68608134 + L2 LINE L2 3174 3312 -1 285 373 67 13 chr12 75676477 75676627 -68605862 + MIR3 SINE MIR 3 160 -48 2878 10 0 0 chr12 75677331 75677640 -68604849 - AluYa5 SINE Alu -2 309 1 3825 110 70 10 chr12 75677726 75678353 -68604136 - Tigger3(Golem) DNA MER2_type 0 3029 2365 43369 35 25 4 chr12 75678386 75678459 -68604030 - L1PA3 LINE L1 0 6155 6085 1261 60 0 0 chr12 75678459 75678609 -68603880 - L1PA7 LINE L1 -4 6150 6001 43369 35 25 4 chr12 75678609 75684636 -68597853 - L1PA3 LINE L1 -70 6085 31 647 151 65 14 chr12 75684636 75684775 -68597714 - Tigger3(Golem) DNA MER2_type -606 2423 2278 * 697 228 0 0 chr12 75684747 75684874 -68597615 - Tigger3(Golem) DNA MER2_type -2901 128 2 505 203 39 39 chr12 75685327 75685455 -68597034 + MIR SINE MIR 109 236 -26 662 311 62 54 chr12 75685599 75685985 -68596504 + MLT1I LTR MaLR 8 396 -13 29 78 0 0 chr12 75686020 75686084 -68596405 + AT_rich Low_complexity Low_complexity 1 64 0 261 0 0 0 chr12 75687238 75687267 -68595222 + (A)n Simple_repeat Simple_repeat 1 29 0 348 283 132 71 chr12 75687840 75688204 -68594285 + MARNA DNA Mariner 57 442 -144 3545 203 195 24 chr12 75688322 75689193 -68593296 + LTR28 LTR ERV1 1 1020 0 375 60 0 0 chr12 75690431 75690481 -68592008 + (CA)n Simple_repeat Simple_repeat 2 51 0 188 156 89 0 chr12 75691394 75691439 -68591050 - L2 LINE L2 -4 3309 3261 237 236 0 42 chr12 75692242 75692314 -68590175 + MIR SINE MIR 96 164 -98 294 256 72 88 chr12 75692352 75692477 -68590012 - MER5A DNA MER1_type -1 188 66 1672 195 24 0 chr12 75692509 75692807 -68589682 - AluJb SINE Alu -7 305 1 1131 212 19 48 chr12 75693387 75693656 -68588833 - MIR SINE MIR 0 262 2 193 344 84 23 chr12 75693793 75693924 -68588565 + L2 LINE L2 2897 3035 -237 391 277 107 0 chr12 75694241 75694353 -68588136 - L2 LINE L2 0 3313 3190 335 257 167 28 chr12 75694533 75694677 -68587812 - MIR SINE MIR -14 248 85 2467 87 0 0 chr12 75696099 75696409 -68586080 + AluSq SINE Alu 1 310 -3 923 105 0 8 chr12 75697099 75697232 -68585257 + AluSp/q SINE Alu 182 313 0 353 284 9 28 chr12 75697368 75697477 -68585012 + MIR SINE MIR 47 153 -109 257 346 122 23 chr12 75698070 75698414 -68584075 + L2 LINE L2 2874 3251 -21 484 252 19 0 chr12 75698669 75698776 -68583713 + L1MC5 LINE L1 5547 5655 -2153 1367 267 79 62 chr12 75698795 75699130 -68583359 + L1MC5 LINE L1 5716 6044 -1917 2503 78 0 0 chr12 75699130 75699436 -68583053 - AluY SINE Alu -5 306 1 1367 267 79 62 chr12 75699436 75700520 -68581969 + L1MC5 LINE L1 6044 7228 -733 876 200 49 69 chr12 75700549 75700899 -68581590 + L1MC5 LINE L1 7584 7926 -35 826 143 0 8 chr12 75702001 75702127 -68580362 + FLAM_C SINE Alu 1 125 -18 353 322 13 20 chr12 75702582 75702734 -68579755 + L2 LINE L2 2837 2987 -285 195 42 0 0 chr12 75702983 75703007 -68579482 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 194 200 200 33 chr12 75704117 75704207 -68578282 + L2 LINE L2 3200 3304 -9 547 273 25 50 chr12 75704209 75704407 -68578082 - L2 LINE L2 -7 3306 3114 399 284 70 25 chr12 75704540 75704812 -68577677 + L1MC/D LINE L1 5295 5602 -751 518 234 72 30 chr12 75705148 75705315 -68577174 - Charlie8 DNA MER1_type -2243 174 1 311 264 99 33 chr12 75705573 75705694 -68576795 - L2 LINE L2 -3 3310 3182 207 0 0 0 chr12 75705937 75705960 -68576529 + (A)n Simple_repeat Simple_repeat 1 23 0 224 293 80 0 chr12 75706007 75706082 -68576407 + MER91A DNA MER1_type 4 84 -112 287 298 181 21 chr12 75706172 75706417 -68576072 - L2 LINE L2 -241 3072 2794 202 363 67 30 chr12 75707093 75707228 -68575261 + L2 LINE L2 3096 3235 -37 4976 201 23 10 chr12 75709162 75711054 -68571435 + L1MB3 LINE L1 4269 6181 -2 326 236 9 85 chr12 75711326 75711432 -68571057 + MER5A DNA MER1_type 9 106 -83 225 132 0 0 chr12 75712672 75712710 -68569779 + (T)n Simple_repeat Simple_repeat 1 38 0 187 339 34 0 chr12 75714196 75714255 -68568234 - L2 LINE L2 -5 3267 3207 2461 61 0 26 chr12 75714275 75714588 -68567901 + L1PA13 LINE L1 5854 6158 -5 398 349 104 20 chr12 75714797 75715190 -68567299 + L2 LINE L2 2884 3309 -4 397 254 164 0 chr12 75715459 75715569 -68566920 - L2 LINE L2 -1 3312 3185 236 318 24 24 chr12 75715581 75715666 -68566823 + L2 LINE L2 3187 3271 -1 27 87 0 0 chr12 75717582 75717651 -68564838 + AT_rich Low_complexity Low_complexity 1 69 0 180 406 53 8 chr12 75717746 75717879 -68564610 - MIR3 SINE MIR -68 140 2 274 309 74 9 chr12 75718778 75718901 -68563588 - MIR SINE MIR -64 144 30 376 302 70 8 chr12 75720282 75720411 -68562078 - MIR SINE MIR -76 186 50 2146 128 0 16 chr12 75721145 75721457 -68561032 + AluSx SINE Alu 1 307 -5 462 184 85 53 chr12 75722185 75722361 -68560128 + MIR SINE MIR 42 220 -42 265 179 71 18 chr12 75722480 75722536 -68559953 + MER91C DNA MER1_type 36 94 -46 774 207 107 6 chr12 75722755 75722924 -68559565 + MER5A DNA MER1_type 3 188 -1 183 216 14 81 chr12 75725448 75725522 -68556967 - L2 LINE L2 -2 3270 3202 291 276 201 17 chr12 75725570 75725744 -68556745 + MIR SINE MIR 28 233 -29 1127 161 101 0 chr12 75725753 75725952 -68556537 - MER20 DNA MER1_type 0 219 1 636 330 0 23 chr12 75727043 75727261 -68555228 - MIR SINE MIR -32 230 18 909 191 55 33 chr12 75727263 75727446 -68555043 - MER5A DNA MER1_type 0 189 3 2219 114 0 3 chr12 75729043 75729351 -68553138 + AluSq SINE Alu 1 307 -6 36 23 0 0 chr12 75729399 75729442 -68553047 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr12 75729602 75729624 -68552865 + AT_rich Low_complexity Low_complexity 1 22 0 209 267 13 147 chr12 75729666 75729816 -68552673 - L2 LINE L2 -44 3228 3099 569 232 6 54 chr12 75729889 75730057 -68552432 - L2 LINE L2 0 3313 3154 312 200 120 0 chr12 75730277 75730377 -68552112 + L1ME LINE L1 5694 5805 -316 971 205 0 0 chr12 75730768 75730939 -68551550 + AluJb SINE Alu 137 307 -5 276 290 91 56 chr12 75731020 75731146 -68551343 + MIR SINE MIR 30 160 -48 340 229 33 49 chr12 75731186 75731308 -68551181 + L1M4 LINE L1 4350 4469 -1677 1419 189 85 0 chr12 75731366 75731781 -68550708 + AluJb SINE Alu 1 437 0 612 265 31 19 chr12 75731788 75732131 -68550358 + MLT1G1 LTR MaLR 217 595 0 1999 126 7 10 chr12 75732599 75732893 -68549596 - AluSx SINE Alu -19 293 1 1219 126 57 48 chr12 75733422 75733476 -68549013 + MER46A DNA MER2_type 5 57 -2674 2143 92 7 10 chr12 75733476 75733770 -68548719 - AluSx SINE Alu -19 293 1 1219 126 57 48 chr12 75733770 75733945 -68548544 + MER46A DNA MER2_type 57 236 0 466 342 94 17 chr12 75736786 75737137 -68545352 + MLT1K LTR MaLR 86 463 -125 255 287 0 32 chr12 75737339 75737433 -68545056 + MIR SINE MIR 73 163 -99 312 188 14 0 chr12 75737551 75737620 -68544869 - MER116 DNA Mariner -8 72 3 23 0 0 0 chr12 75738210 75738233 -68544256 + AT_rich Low_complexity Low_complexity 1 23 0 755 295 26 8 chr12 75738335 75738569 -68543920 + MIR SINE MIR 16 253 -9 1268 258 54 56 chr12 75739288 75739451 -68543038 - L1ME3A LINE L1 -132 6038 5876 1805 151 3 51 chr12 75739451 75739763 -68542726 - AluJo SINE Alu -15 297 1 1268 258 54 56 chr12 75739763 75740080 -68542409 - L1ME3A LINE L1 -294 5876 5559 418 246 45 0 chr12 75740080 75740190 -68542299 - MIR SINE MIR -97 165 51 201 178 0 0 chr12 75741003 75741048 -68541441 + T-rich Low_complexity Low_complexity 1 45 0 721 176 8 0 chr12 75742075 75742194 -68540295 + AluJb SINE Alu 1 120 -192 255 61 0 0 chr12 75742194 75742227 -68540262 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 216 0 0 0 chr12 75742380 75742404 -68540085 + (A)n Simple_repeat Simple_repeat 1 24 0 470 204 231 7 chr12 75742565 75742712 -68539777 + MER5A DNA MER1_type 4 183 -6 235 188 21 0 chr12 75743501 75743549 -68538940 + A-rich Low_complexity Low_complexity 5 53 0 933 243 9 9 chr12 75744519 75744733 -68537756 + MIR SINE MIR 49 262 0 563 183 0 8 chr12 75744742 75744868 -68537621 + L1MA4 LINE L1 6169 6293 -7 2325 117 0 0 chr12 75745095 75745395 -68537094 - AluSx SINE Alu -12 300 1 23 0 0 0 chr12 75745397 75745420 -68537069 + AT_rich Low_complexity Low_complexity 1 23 0 481 302 123 67 chr12 75745665 75746033 -68536456 + HAL1 LINE L1 2 348 -2159 2422 74 0 0 chr12 75746033 75746344 -68536145 + AluY SINE Alu 1 311 0 481 302 123 67 chr12 75746344 75746835 -68535654 + HAL1 LINE L1 348 909 -1598 1506 249 60 47 chr12 75746892 75747491 -68534998 + L1ME1 LINE L1 155 761 -5444 1378 148 112 26 chr12 75747505 75747809 -68534680 - MER1B DNA MER1_type 0 339 10 496 246 103 61 chr12 75747822 75748200 -68534289 + L1ME1 LINE L1 778 1171 -5047 396 233 93 72 chr12 75748537 75748724 -68533765 + L1ME1 LINE L1 2230 2424 -3972 3262 94 6 9 chr12 75748724 75749191 -68533298 + L1PA11 LINE L1 5709 6174 0 396 233 93 72 chr12 75749191 75749239 -68533250 + L1ME1 LINE L1 2424 2470 -3926 * 2081 44 22 0 chr12 75749222 75749495 -68532994 - L1P1 LINE L1 -530 5625 5347 8362 236 53 25 chr12 75749504 75753181 -68529308 + L1ME1 LINE L1 2450 6233 -2 1095 251 68 33 chr12 75753207 75753694 -68528795 + L1M4 LINE L1 3133 3636 -2510 202 308 176 0 chr12 75753904 75753995 -68528494 + L2 LINE L2 3154 3260 -12 198 71 0 0 chr12 75753997 75754025 -68528464 + (TGGA)n Simple_repeat Simple_repeat 4 31 0 561 150 10 0 chr12 75754320 75754420 -68528069 + L1PB4 LINE L1 6055 6155 -1 2126 128 0 13 chr12 75754434 75754738 -68527751 + AluSx SINE Alu 1 300 -12 372 43 0 0 chr12 75754739 75754785 -68527704 + (TCTCCC)n Simple_repeat Simple_repeat 5 50 0 8048 40 5 245 chr12 75754785 75756537 -68525952 + SVA Other Other 57 1386 0 23 0 0 0 chr12 75756537 75756560 -68525929 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr12 75756599 75756632 -68525857 + AT_rich Low_complexity Low_complexity 1 33 0 1663 191 3 14 chr12 75757160 75757454 -68525035 + AluJb SINE Alu 1 291 -21 847 198 115 0 chr12 75757462 75757679 -68524810 - L1MC4a LINE L1 -435 7373 7132 618 193 26 0 chr12 75757764 75757878 -68524611 - L1PA16 LINE L1 -5 6161 6045 259 258 0 0 chr12 75757889 75757951 -68524538 - L1MD3 LINE L1 -221 7774 7713 * 452 256 8 23 chr12 75757937 75758069 -68524420 - L1MC4 LINE L1 -311 7564 7371 1595 271 31 58 chr12 75758109 75758835 -68523654 + HAL1b LINE L1 464 1165 -183 2186 138 42 20 chr12 75758835 75759191 -68523298 - THE1B LTR MaLR 0 364 1 1595 271 31 58 chr12 75759191 75759313 -68523176 + HAL1b LINE L1 1165 1289 -59 245 338 13 0 chr12 75759610 75759761 -68522728 + L1P LINE L1 3634 3786 -2360 2116 142 3 0 chr12 75759950 75760259 -68522230 + AluSx SINE Alu 1 310 -2 251 247 172 23 chr12 75760438 75760827 -68521662 + L1M4 LINE L1 4206 4652 -1494 232 333 0 0 chr12 75761368 75761419 -68521070 + L2 LINE L2 3160 3210 -62 231 242 219 0 chr12 75761548 75761676 -68520813 + L1ME4a LINE L1 5961 6116 -5 7491 24 0 9 chr12 75762042 75762933 -68519556 + L1PA3 LINE L1 5273 6155 0 243 0 0 0 chr12 75762988 75763015 -68519474 + (A)n Simple_repeat Simple_repeat 1 27 0 446 268 41 0 chr12 75763765 75763888 -68518601 - L2 LINE L2 -1 3312 3185 356 286 105 0 chr12 75764165 75764298 -68518191 - L2 LINE L2 -562 2752 2606 593 249 85 19 chr12 75764318 75764523 -68517966 - MIR SINE MIR -25 237 22 214 276 17 0 chr12 75765906 75765964 -68516525 + GA-rich Low_complexity Low_complexity 1 59 0 252 358 71 58 chr12 75766198 75766424 -68516065 - L2 LINE L2 -109 3163 2935 245 367 53 40 chr12 75766577 75766727 -68515762 + L2 LINE L2 3121 3272 0 376 349 33 0 chr12 75766785 75766937 -68515552 - L2 LINE L2 -541 2773 2617 731 267 36 44 chr12 75767030 75767255 -68515234 + MIR SINE MIR 8 230 -32 763 185 98 73 chr12 75767545 75767750 -68514739 - MER63A DNA MER1_type 0 210 1 296 368 46 0 chr12 75768309 75768483 -68514006 + L3 LINE CR1 267 448 -1129 207 292 139 0 chr12 75768492 75768564 -68513925 - L2 LINE L2 0 3313 3232 525 350 153 25 chr12 75768703 75769342 -68513147 + L3 LINE CR1 475 1195 -382 590 230 64 32 chr12 75769365 75769552 -68512937 - MIR SINE MIR -14 248 56 268 309 0 0 chr12 75770735 75770803 -68511686 + GA-rich Low_complexity Low_complexity 3 70 0 292 274 105 0 chr12 75771142 75771237 -68511252 - L2 LINE L2 0 3313 3209 340 294 66 7 chr12 75771497 75771633 -68510856 + MIR SINE MIR 100 243 -19 3631 107 112 47 chr12 75772689 75773410 -68509079 + LTR1 LTR ERV1 18 785 0 359 235 206 7 chr12 75774552 75774688 -68507801 - MIR SINE MIR -53 209 47 627 273 76 25 chr12 75775376 75775614 -68506875 + MIR SINE MIR 1 250 -12 1216 280 133 30 chr12 75775667 75776137 -68506352 + L2 LINE L2 1828 2249 -1064 387 0 0 0 chr12 75776137 75776180 -68506309 + (CA)n Simple_repeat Simple_repeat 2 44 0 1216 280 133 30 chr12 75776180 75776816 -68505673 + L2 LINE L2 2249 3306 -7 2559 156 11 15 chr12 75776816 75777279 -68505210 + MER65C LTR ERV1 1 461 0 244 246 0 15 chr12 75777319 75777384 -68505105 + MIR SINE MIR 69 132 -130 515 314 47 0 chr12 75777499 75777671 -68504818 - MIR SINE MIR -80 182 3 1122 195 67 0 chr12 75777727 75777937 -68504552 - MER58A DNA MER1_type 0 224 1 213 145 40 0 chr12 75778626 75778702 -68503787 + (TA)n Simple_repeat Simple_repeat 1 79 0 253 191 29 0 chr12 75778798 75778866 -68503623 + (TA)n Simple_repeat Simple_repeat 2 71 0 209 206 48 63 chr12 75779545 75779608 -68502881 - L2 LINE L2 -1 3312 3251 351 242 55 11 chr12 75780411 75780502 -68501987 + MIR SINE MIR 165 259 -3 1315 193 82 31 chr12 75780591 75780979 -68501510 - LTR37A LTR ERV1 -1 425 18 388 259 72 67 chr12 75781096 75781501 -68500988 - L1ME4a LINE L1 -8 6113 5707 21 36 0 0 chr12 75781825 75781853 -68500636 + AT_rich Low_complexity Low_complexity 1 28 0 330 200 29 0 chr12 75782078 75782148 -68500341 + tRNA-Cys-TGC tRNA tRNA 1 72 -3 194 114 114 0 chr12 75782239 75782274 -68500215 + L2 LINE L2 3267 3305 -8 450 94 0 0 chr12 75784561 75784625 -68497864 + (TA)n Simple_repeat Simple_repeat 2 65 0 190 148 0 33 chr12 75784692 75784753 -68497736 + (TA)n Simple_repeat Simple_repeat 2 60 0 1701 111 54 33 chr12 75784765 75785098 -68497391 - L1MA4 LINE L1 -6 6294 5955 195 42 0 0 chr12 75785115 75785139 -68497350 + (TA)n Simple_repeat Simple_repeat 2 25 0 612 278 127 30 chr12 75785152 75785522 -68496967 - L1MC4 LINE L1 -149 7893 7488 214 305 89 84 chr12 75785700 75785890 -68496599 - L2 LINE L2 -38 3234 3044 1281 111 23 32 chr12 75785944 75786161 -68496328 - L1MA5A LINE L1 0 6297 6083 1627 132 58 18 chr12 75786309 75786636 -68495853 - L1MA4 LINE L1 -6 6294 5955 478 246 49 89 chr12 75787290 75787493 -68494996 - Charlie8 DNA MER1_type -2141 276 82 2259 104 3 0 chr12 75788251 75788550 -68493939 - AluSp SINE Alu -13 300 1 1074 264 63 18 chr12 75788566 75788899 -68493590 - L2 LINE L2 -540 2774 2427 460 263 224 26 chr12 75789513 75789852 -68492637 + L2 LINE L2 2055 2460 -854 200 160 13 67 chr12 75840154 75840229 -68442260 + (CACAT)n Simple_repeat Simple_repeat 3 73 0 738 147 26 0 chr12 75844058 75844174 -68438315 + FLAM_A SINE Alu 2 120 -13 454 274 67 43 chr12 75844609 75844937 -68437552 + HAL1b LINE L1 68 403 -945 446 284 82 5 chr12 75845074 75845282 -68437207 + HAL1b LINE L1 616 839 -509 23 33 0 0 chr12 75846005 75846035 -68436454 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 75846175 75846200 -68436289 + AT_rich Low_complexity Low_complexity 1 25 0 321 261 22 14 chr12 75846214 75846352 -68436137 - L1MC5 LINE L1 -51 7910 7772 784 242 31 0 chr12 75846373 75846596 -68435893 - L1ME1 LINE L1 -5 6161 5932 27 0 0 0 chr12 75846714 75846741 -68435748 + AT_rich Low_complexity Low_complexity 1 27 0 2351 100 0 7 chr12 75848200 75848510 -68433979 - AluSx SINE Alu -4 308 1 420 291 105 65 chr12 75849638 75850305 -68432184 + HAL1b LINE L1 16 709 -639 2274 263 48 11 chr12 75850314 75850953 -68431536 + L2 LINE L2 250 912 -2402 2947 67 42 0 chr12 75850954 75851338 -68431151 + MLT2A1 LTR ERVL 2 405 -39 225 83 0 0 chr12 75851338 75851374 -68431115 + (TA)n Simple_repeat Simple_repeat 1 36 0 2947 67 42 0 chr12 75851374 75851390 -68431099 + MLT2A1 LTR ERVL 405 419 -25 22 0 0 0 chr12 75851390 75851412 -68431077 + AT_rich Low_complexity Low_complexity 1 22 0 392 317 65 16 chr12 75851418 75851604 -68430885 - LTR33 LTR ERVL -184 337 143 359 280 0 16 chr12 75853427 75853552 -68428937 + L1MC4a LINE L1 5724 5846 -1962 445 223 0 39 chr12 75854379 75854482 -68428007 - L2 LINE L2 -33 3280 3182 367 279 67 47 chr12 75854818 75854988 -68427501 - MIR SINE MIR -51 211 36 411 146 62 10 chr12 75855432 75855528 -68426961 + MER94 DNA DNA 1 101 -33 24 0 0 0 chr12 75855560 75855584 -68426905 + AT_rich Low_complexity Low_complexity 1 24 0 374 181 75 23 chr12 75855930 75856063 -68426426 - L1ME4a LINE L1 0 6121 5982 537 298 90 8 chr12 75856098 75856454 -68426035 - L1ME4a LINE L1 -201 5920 5536 2331 85 27 0 chr12 75856704 75856997 -68425492 + AluSx SINE Alu 1 301 -11 334 273 11 17 chr12 75857249 75857355 -68425134 - MIR SINE MIR -71 137 51 820 259 15 34 chr12 75857610 75857876 -68424613 + MIR SINE MIR 2 262 0 324 217 11 54 chr12 75857891 75857983 -68424506 - MIR SINE MIR -57 205 118 566 213 0 21 chr12 75858920 75859061 -68423428 + L1MA4 LINE L1 6155 6292 -8 464 270 88 13 chr12 75859729 75859888 -68422601 + L2 LINE L2 3101 3271 -1 281 239 57 44 chr12 75860654 75860813 -68421676 + HAL1b LINE L1 1188 1348 0 938 244 146 7 chr12 75861444 75861719 -68420770 - Charlie2 DNA MER1_type -2469 313 1 187 302 19 19 chr12 75861720 75861773 -68420716 - MIR3 SINE MIR -49 159 107 377 257 57 38 chr12 75861818 75861923 -68420566 + MIR3 SINE MIR 59 165 -43 1084 278 57 8 chr12 75861927 75862279 -68420210 + LTR33 LTR ERVL 4 372 -149 4060 206 72 51 chr12 75862552 75863246 -68419243 - L1MB5 LINE L1 0 7808 7130 1811 52 9 13 chr12 75863246 75863477 -68419012 - AluY SINE Alu -2 309 80 4060 206 72 51 chr12 75863477 75864395 -68418094 - L1MB5 LINE L1 -678 7130 6111 2062 144 0 10 chr12 75864395 75864707 -68417782 + AluSx SINE Alu 1 309 -3 4060 206 72 51 chr12 75864707 75865464 -68417025 - L1MB5 LINE L1 -1697 6111 5371 1296 223 10 0 chr12 75865479 75865780 -68416709 - L1MC4a LINE L1 -1923 5885 5582 2121 134 0 3 chr12 75867021 75867327 -68415162 + AluSq SINE Alu 2 306 -7 453 324 7 14 chr12 75867382 75867524 -68414965 - L2 LINE L2 0 3313 3173 205 174 232 14 chr12 75867545 75867614 -68414875 - L2 LINE L2 -5 3308 3225 1934 235 86 80 chr12 75867772 75868788 -68413701 - L2 LINE L2 -84 3229 2225 31 82 0 0 chr12 75868794 75868867 -68413622 + AT_rich Low_complexity Low_complexity 1 73 0 2484 65 0 0 chr12 75869016 75869322 -68413167 + AluY SINE Alu 1 306 -5 2166 107 7 7 chr12 75870420 75870720 -68411769 - AluSg SINE Alu -8 302 3 408 114 11 23 chr12 75870977 75871065 -68411424 + (TCC)n Simple_repeat Simple_repeat 1 87 0 189 0 0 0 chr12 75871117 75871138 -68411351 + (CCCA)n Simple_repeat Simple_repeat 2 22 0 189 206 44 29 chr12 75872244 75872312 -68410177 - MIR SINE MIR -65 197 129 2137 131 0 0 chr12 75873040 75873322 -68409167 + AluSg SINE Alu 1 285 -25 965 116 7 0 chr12 75873322 75873477 -68409012 + (GGAA)n Simple_repeat Simple_repeat 1 156 0 2137 131 0 0 chr12 75873477 75873492 -68408997 + AluSg SINE Alu 284 298 -12 2267 86 3 7 chr12 75873498 75873799 -68408690 + AluSp SINE Alu 2 301 -12 2199 102 7 3 chr12 75873841 75874135 -68408354 + AluSx SINE Alu 1 295 -17 200 111 28 0 chr12 75874211 75874247 -68408242 + (CA)n Simple_repeat Simple_repeat 2 38 0 2182 113 0 3 chr12 75874343 75874644 -68407845 - AluSx SINE Alu -12 300 1 541 252 54 59 chr12 75878511 75878733 -68403756 - MIR SINE MIR -28 234 14 29 60 0 0 chr12 75879629 75879679 -68402810 + AT_rich Low_complexity Low_complexity 1 50 0 2337 82 3 22 chr12 75880800 75881118 -68401371 + AluSx SINE Alu 1 312 0 211 182 0 0 chr12 75881118 75881151 -68401338 + polypurine Low_complexity Low_complexity 2 34 0 309 215 187 28 chr12 75881156 75881263 -68401226 - L2 LINE L2 -12 3260 3137 1746 124 11 11 chr12 75881341 75881607 -68400882 + AluSx SINE Alu 38 303 -9 332 340 47 9 chr12 75881701 75881807 -68400682 - MIR SINE MIR -78 130 21 218 200 0 0 chr12 75882143 75882193 -68400296 + T-rich Low_complexity Low_complexity 3 52 0 2425 137 89 14 chr12 75882228 75882568 -68399921 - MER65C LTR ERV1 -4 457 77 2202 87 7 3 chr12 75882568 75882854 -68399635 - AluSc SINE Alu -22 287 1 2425 137 89 14 chr12 75882854 75882938 -68399551 - MER65C LTR ERV1 -384 77 1 770 230 68 77 chr12 75882939 75883174 -68399315 + MIR SINE MIR 15 247 -15 354 268 0 146 chr12 75884168 75884381 -68398108 + MER5A DNA MER1_type 8 189 0 477 342 5 21 chr12 75885407 75885594 -68396895 - MER5A DNA MER1_type -5 184 1 411 321 0 0 chr12 75886365 75886474 -68396015 - L2 LINE L2 -1 3312 3204 1626 169 0 97 chr12 75886687 75887018 -68395471 - AluJo SINE Alu -3 299 1 2234 120 10 0 chr12 75887545 75887886 -68394603 - AluSx SINE Alu 0 344 1 349 249 61 111 chr12 75888558 75888739 -68393750 + MER5A DNA MER1_type 1 172 -6 711 261 6 17 chr12 75888762 75888942 -68393547 - MER5B DNA MER1_type 0 178 1 296 282 13 0 chr12 75889243 75889321 -68393168 - MER112 DNA MER1_type -5 255 177 534 79 0 0 chr12 75889324 75889400 -68393089 + (AATAG)n Simple_repeat Simple_repeat 1 76 0 1843 148 173 26 chr12 75890541 75890893 -68391596 - MER4A LTR ERV1 0 664 261 621 104 21 10 chr12 75890893 75890989 -68391500 - MER4A LTR ERV1 -567 97 1 1835 137 3 23 chr12 75891502 75891808 -68390681 + AluJb SINE Alu 1 300 -12 210 364 0 13 chr12 75892095 75892172 -68390317 - MER5A DNA MER1_type 0 189 114 517 196 12 127 chr12 75892173 75892273 -68390216 + MER5B DNA MER1_type 26 99 -79 2422 85 0 3 chr12 75892273 75892579 -68389910 - AluSx SINE Alu -2 310 6 517 196 12 127 chr12 75892579 75892651 -68389838 + MER5B DNA MER1_type 99 178 0 273 282 35 63 chr12 75892651 75892763 -68389726 - MER5A DNA MER1_type -79 110 3 849 134 8 22 chr12 75892913 75893047 -68389442 - FLAM_C SINE Alu -10 133 2 267 225 62 127 chr12 75893331 75893575 -68388914 + L1MC4a LINE L1 5697 5924 -1884 2419 70 3 0 chr12 75893772 75894073 -68388416 + AluY SINE Alu 1 302 -9 256 191 0 0 chr12 75894122 75894164 -68388325 + L2 LINE L2 3226 3267 -5 473 229 65 59 chr12 75894279 75894432 -68388057 - MIR SINE MIR -19 243 90 342 115 0 0 chr12 75894445 75894497 -68387992 + (CA)n Simple_repeat Simple_repeat 2 53 0 2105 104 7 0 chr12 75894523 75894803 -68387686 - AluSx SINE Alu -30 282 1 224 305 122 46 chr12 75895070 75895201 -68387288 - MIR SINE MIR -31 231 91 217 225 0 0 chr12 75895270 75895310 -68387179 + (TG)n Simple_repeat Simple_repeat 1 40 0 232 316 63 25 chr12 75895819 75895977 -68386512 + MER117 DNA MER1_type 34 197 0 21 0 0 0 chr12 75896133 75896154 -68386335 + AT_rich Low_complexity Low_complexity 1 21 0 1788 176 0 14 chr12 75896588 75896884 -68385605 - AluJo SINE Alu -20 292 1 22 0 0 0 chr12 75896889 75896911 -68385578 + AT_rich Low_complexity Low_complexity 1 22 0 234 296 25 25 chr12 75896938 75897019 -68385470 + MARNA DNA Mariner 122 202 -384 1088 139 41 6 chr12 75897944 75898116 -68384373 - AluSg/x SINE Alu -1 311 134 1800 141 24 10 chr12 75898971 75899262 -68383227 + AluJb SINE Alu 4 298 -14 1360 78 0 0 chr12 75899322 75899489 -68383000 + AluSp SINE Alu 137 303 -10 721 158 30 61 chr12 75899940 75900105 -68382384 + MER5B DNA MER1_type 19 178 0 2053 132 0 19 chr12 75900638 75900948 -68381541 + AluSx SINE Alu 1 304 -8 436 377 19 6 chr12 75902494 75902653 -68379836 - MER91A DNA MER1_type -35 161 1 1123 151 18 78 chr12 75902986 75903205 -68379284 + AluJo SINE Alu 85 290 -22 261 0 0 0 chr12 75903586 75903615 -68378874 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1363 320 61 18 chr12 75905222 75905782 -68376707 - MLT1K LTR MaLR -1 587 4 218 323 63 31 chr12 75906505 75906632 -68375857 - L2 LINE L2 -1 3312 3182 2109 101 7 36 chr12 75906786 75907092 -68375397 + AluSx SINE Alu 4 300 -12 248 322 171 51 chr12 75907213 75907505 -68374984 - L2 LINE L2 -450 2864 2538 21 0 0 0 chr12 75908022 75908043 -68374446 + AT_rich Low_complexity Low_complexity 1 21 0 1931 157 7 0 chr12 75908061 75908355 -68374134 + AluSx SINE Alu 1 296 -16 380 221 87 54 chr12 75908368 75908517 -68373972 - L1MC5 LINE L1 -65 7896 7743 2023 101 0 4 chr12 75908747 75909015 -68373474 - AluSx SINE Alu -4 308 42 224 76 91 15 chr12 75909646 75909712 -68372777 + (TA)n Simple_repeat Simple_repeat 1 71 0 1724 157 29 10 chr12 75910516 75910822 -68371667 - AluJo SINE Alu 0 312 1 341 304 18 23 chr12 75914163 75914349 -68368140 - MIR SINE MIR -46 216 34 1870 172 3 0 chr12 75914734 75915031 -68367458 + AluJo SINE Alu 1 298 -14 206 304 96 48 chr12 75915597 75915722 -68366767 + L2 LINE L2 2894 3024 -248 2209 123 0 0 chr12 75916991 75917284 -68365205 + AluSx SINE Alu 1 293 -19 461 188 211 8 chr12 75917599 75917732 -68364757 + MIR SINE MIR 10 169 -93 301 231 103 34 chr12 75917745 75917862 -68364627 + MIR SINE MIR 127 251 -11 340 113 42 0 chr12 75917978 75918049 -68364440 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 1191 223 9 0 chr12 75918074 75918298 -68364191 + Charlie1 DNA MER1_type 1 226 -2535 695 199 7 0 chr12 75918293 75918434 -68364055 + Charlie1 DNA MER1_type 2620 2761 0 * 239 270 32 0 chr12 75919776 75919839 -68362650 - MIR3 SINE MIR 0 208 144 206 231 0 0 chr12 75919866 75919905 -68362584 + CT-rich Low_complexity Low_complexity 2 40 0 245 297 14 0 chr12 75920065 75920139 -68362350 + CT-rich Low_complexity Low_complexity 1 75 0 596 257 20 17 chr12 75920777 75920985 -68361504 - MIR SINE MIR -6 256 8 2335 103 0 10 chr12 75922584 75922895 -68359594 - AluSx SINE Alu 0 312 5 722 206 8 8 chr12 75923294 75923425 -68359064 - FLAM_A SINE Alu -2 131 1 967 183 83 0 chr12 75924572 75924752 -68357737 + MER20 DNA MER1_type 1 195 -24 2003 117 11 14 chr12 75925097 75925378 -68357111 + AluSx SINE Alu 6 285 -27 441 256 54 58 chr12 75926220 75926726 -68355763 - L1M2 LINE L1 -726 5516 5043 188 234 195 13 chr12 75927851 75927928 -68354561 + L2 LINE L2 3187 3277 -36 345 305 28 14 chr12 75928010 75928151 -68354338 + MIR3 SINE MIR 38 180 -28 2183 114 0 7 chr12 75928152 75928451 -68354038 + AluSx SINE Alu 1 297 -15 331 262 127 19 chr12 75928592 75928778 -68353711 - MIR SINE MIR -10 252 37 415 256 78 0 chr12 75928943 75929072 -68353417 - MIR SINE MIR -6 256 118 5001 208 1 5 chr12 75929076 75930019 -68352470 + HERVI LTR ERV1 6807 7745 -40 392 303 63 0 chr12 75930046 75930188 -68352301 - MIR SINE MIR -66 196 46 292 185 31 31 chr12 75931233 75931298 -68351191 + Charlie8 DNA MER1_type 1344 1408 -1009 1924 134 29 0 chr12 75931950 75932227 -68350262 - AluSx SINE Alu -27 285 1 1683 170 13 29 chr12 75932812 75933118 -68349371 + AluJo SINE Alu 5 305 -7 185 0 40 0 chr12 75933395 75933420 -68349069 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 618 204 0 0 chr12 75933441 75933549 -68348940 - FLAM_A SINE Alu -33 109 2 26 64 0 0 chr12 75933576 75933623 -68348866 + AT_rich Low_complexity Low_complexity 1 47 0 2172 118 0 16 chr12 75933742 75934048 -68348441 + AluSx SINE Alu 1 301 -11 438 277 100 0 chr12 75934051 75934181 -68348308 + MIR SINE MIR 22 164 -98 595 297 80 4 chr12 75934272 75934511 -68347978 + MIR SINE MIR 6 262 0 917 57 0 0 chr12 75935432 75935538 -68346951 + AluSp SINE Alu 1 106 -207 677 308 59 77 chr12 75935693 75936026 -68346463 - L3 LINE CR1 -11 1566 1247 240 111 0 0 chr12 75936026 75936062 -68346427 + (CA)n Simple_repeat Simple_repeat 2 37 0 677 308 59 77 chr12 75936062 75936325 -68346164 - L3 LINE CR1 -330 1247 981 292 218 0 39 chr12 75936324 75936402 -68346087 + L2 LINE L2 3239 3313 0 * 386 255 166 34 chr12 75936519 75936754 -68345735 + MLT1J LTR MaLR 76 341 -170 245 92 108 92 chr12 75936781 75936846 -68345643 + MLT1J2 LTR MaLR 385 450 0 1657 141 62 0 chr12 75937032 75937274 -68345215 + AluSx SINE Alu 1 257 -55 2470 76 7 0 chr12 75937532 75937833 -68344656 + AluY SINE Alu 1 303 -8 252 313 12 12 chr12 75937836 75937919 -68344570 - MIR SINE MIR -139 123 41 264 292 37 92 chr12 75938537 75938954 -68343535 + L2 LINE L2 2682 3072 -200 241 167 0 0 chr12 75939054 75939096 -68343393 + L2 LINE L2 3264 3305 -8 2402 102 0 3 chr12 75939448 75939761 -68342728 + AluSx SINE Alu 1 312 0 371 248 44 26 chr12 75940485 75940598 -68341891 + MIR SINE MIR 19 133 -75 486 145 13 0 chr12 75940672 75940748 -68341741 + MLT2D LTR ERVL 1 77 -337 277 375 21 7 chr12 75940979 75941123 -68341366 - MIR3 SINE MIR -10 198 53 1618 188 98 17 chr12 75941223 75941569 -68340920 - MLT1A2 LTR MaLR 0 374 1 2213 114 3 3 chr12 75941616 75941914 -68340575 + AluSg SINE Alu 1 298 -12 2448 81 7 0 chr12 75941930 75942239 -68340250 + AluY SINE Alu 1 311 0 1050 111 6 11 chr12 75942243 75942423 -68340066 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 778 306 64 29 chr12 75942644 75943020 -68339469 - L2 LINE L2 -5 3308 2920 1980 159 126 77 chr12 75943047 75943310 -68339179 + MER4A LTR ERV1 1 250 -350 1649 129 8 8 chr12 75943310 75943558 -68338931 + AluSx SINE Alu 57 304 -8 1980 159 126 77 chr12 75943558 75943866 -68338623 + MER4A LTR ERV1 250 600 0 391 301 148 40 chr12 75944323 75945295 -68337194 - L2 LINE L2 -23 3290 2188 264 284 43 57 chr12 75945735 75945876 -68336613 - MIR SINE MIR -2 260 122 22 56 0 0 chr12 75946123 75946159 -68336330 + AT_rich Low_complexity Low_complexity 1 36 0 1336 170 0 5 chr12 75946169 75946381 -68336108 - AluJb SINE Alu -16 296 86 2235 130 99 8 chr12 75946461 75946853 -68335636 - MSTA LTR MaLR 0 428 1 519 243 127 0 chr12 75947350 75947531 -68334958 + MIR SINE MIR 59 262 0 2283 122 0 0 chr12 75947996 75948307 -68334182 + AluSx SINE Alu 1 311 -1 446 315 30 20 chr12 75948400 75948600 -68333889 - MIR SINE MIR -1 261 60 5069 131 49 4 chr12 75948605 75949423 -68333066 + L1MC1 LINE L1 5470 6324 -9 707 188 8 15 chr12 75949425 75949558 -68332931 + FLAM_C SINE Alu 1 132 -1 297 167 33 17 chr12 75949597 75949657 -68332832 - MIR SINE MIR -199 63 3 324 0 0 0 chr12 75949707 75949743 -68332746 + (CA)n Simple_repeat Simple_repeat 2 37 0 1971 108 54 7 chr12 75949781 75950058 -68332431 + AluSc SINE Alu 1 290 -19 308 301 186 5 chr12 75950960 75951153 -68331336 - MIR SINE MIR -12 250 23 1986 157 0 3 chr12 75951234 75951533 -68330956 + AluJb SINE Alu 1 298 -14 289 335 95 13 chr12 75951715 75951873 -68330616 - MIR3 SINE MIR -37 171 1 2136 120 0 10 chr12 75952801 75953102 -68329387 - AluSx SINE Alu -14 298 1 383 308 18 1 chr12 75953155 75953287 -68329202 - MIR SINE MIR -62 146 30 1101 128 45 0 chr12 75954010 75954189 -68328300 - MER20 DNA MER1_type 0 219 33 2220 123 3 7 chr12 75954586 75954894 -68327595 + AluSx SINE Alu 1 307 -5 180 0 0 0 chr12 75955487 75955507 -68326982 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 389 309 94 17 chr12 75955549 75955730 -68326759 - L2 LINE L2 -2 3311 3117 854 270 118 58 chr12 75955824 75956342 -68326147 + LTR67 LTR ERVL 2 550 -7 4294 160 74 68 chr12 75956687 75957594 -68324895 - MER21A LTR ERV1 -18 913 2 1189 273 130 11 chr12 75958403 75958865 -68323624 - HAL1 LINE L1 -723 1784 1268 1883 108 13 76 chr12 75958865 75958877 -68323612 - AluSq SINE Alu -18 295 284 210 71 0 0 chr12 75958877 75958905 -68323584 + (TG)n Simple_repeat Simple_repeat 1 28 0 1883 108 13 76 chr12 75958905 75959207 -68323282 - AluSq SINE Alu -29 284 1 1435 186 73 7 chr12 75959228 75959502 -68322987 - AluJb SINE Alu -20 292 1 31 0 0 0 chr12 75959539 75959570 -68322919 + AT_rich Low_complexity Low_complexity 1 31 0 586 108 9 47 chr12 75959579 75959602 -68322887 - L1M3 LINE L1 -480 5691 5669 2109 114 0 29 chr12 75959602 75959909 -68322580 + AluSq SINE Alu 3 300 -13 586 108 9 47 chr12 75959909 75960017 -68322472 - L1M3 LINE L1 -502 5669 5570 299 207 25 66 chr12 75960016 75960137 -68322352 - HAL1 LINE L1 -1398 1109 994 * 605 294 56 0 chr12 75960145 75960325 -68322164 + MIR SINE MIR 9 198 -64 201 343 128 0 chr12 75960558 75960660 -68321829 + L2 LINE L2 3144 3258 -14 184 274 123 38 chr12 75960666 75960772 -68321717 + MIR SINE MIR 100 214 -48 259 220 20 60 chr12 75961403 75961503 -68320986 - L1MC/D LINE L1 -1909 5899 5804 720 256 33 105 chr12 75961519 75961851 -68320638 - MLT1J1 LTR MaLR -27 419 112 413 269 114 81 chr12 75962112 75962241 -68320248 + L1ME4a LINE L1 5504 5627 -494 2150 129 0 3 chr12 75962241 75962543 -68319946 - AluSx SINE Alu -11 301 1 413 269 114 81 chr12 75962543 75962792 -68319697 + L1ME4a LINE L1 5627 5893 -228 385 208 152 8 chr12 75963316 75963441 -68319048 - Charlie1 DNA MER1_type -5 2756 2614 1979 91 0 41 chr12 75963443 75963763 -68318726 - AluSx SINE Alu -5 307 1 308 62 62 0 chr12 75964046 75964094 -68318395 + Alu SINE Alu 256 306 -2 2494 181 55 43 chr12 75964573 75964817 -68317672 + L1PB4 LINE L1 5525 5765 -391 6495 18 0 0 chr12 75964817 75965542 -68316947 + L1PA3 LINE L1 5431 6155 0 2494 181 55 43 chr12 75965542 75965920 -68316569 + L1PB4 LINE L1 5765 6154 -2 197 137 196 20 chr12 75966232 75966283 -68316206 + MIR SINE MIR 157 216 -46 1033 181 49 25 chr12 75966769 75966973 -68315516 + AluJb SINE Alu 84 292 -20 1373 131 0 23 chr12 75967045 75967266 -68315223 + AluSg/x SINE Alu 79 294 -16 1349 119 11 0 chr12 75967386 75967563 -68314926 - AluSq SINE Alu -134 179 1 709 135 19 70 chr12 75968166 75968434 -68314055 + MSTC LTR MaLR 1 303 -125 21 57 0 0 chr12 75969548 75969583 -68312906 + AT_rich Low_complexity Low_complexity 1 35 0 2152 124 7 3 chr12 75969661 75969967 -68312522 + AluSq SINE Alu 1 307 -6 1428 163 58 33 chr12 75969969 75970245 -68312244 + AluJo SINE Alu 1 283 -19 200 332 117 18 chr12 75970332 75970555 -68311934 - L3 LINE CR1 -24 1553 1309 611 274 28 19 chr12 75972303 75972515 -68309974 - MIR SINE MIR -17 245 32 731 227 68 6 chr12 75973259 75973422 -68309067 - FAM SINE Alu -11 174 2 2410 82 0 7 chr12 75973641 75973944 -68308545 - AluSg SINE Alu -9 301 1 22 35 0 0 chr12 75974434 75974463 -68308026 + AT_rich Low_complexity Low_complexity 1 29 0 1926 146 38 0 chr12 75974495 75974783 -68307706 - AluJo SINE Alu -13 299 1 1769 165 3 10 chr12 75975206 75975503 -68306986 - AluJb SINE Alu -17 295 1 2159 99 3 17 chr12 75976423 75976715 -68305774 - AluSg SINE Alu -22 288 1 2127 101 7 42 chr12 75976853 75977161 -68305328 - AluSp SINE Alu -14 299 3 1379 69 53 5 chr12 75977441 75977629 -68304860 - MER107 DNA MER1_type 0 197 1 268 230 187 22 chr12 75977661 75977800 -68304689 - MER112 DNA MER1_type -50 210 49 232 261 80 57 chr12 75977893 75977981 -68304508 + MIR SINE MIR 20 109 -153 2199 115 0 7 chr12 75978334 75978639 -68303850 + AluSx SINE Alu 1 303 -9 798 222 29 0 chr12 75979018 75979189 -68303300 + MER8 DNA MER2_type 2 177 -62 345 174 58 0 chr12 75979222 75979291 -68303198 - Tigger2 DNA MER2_type -2645 73 1 2018 129 13 13 chr12 75980124 75980427 -68302062 + AluSx SINE Alu 1 303 -9 408 83 0 17 chr12 75980491 75980551 -68301938 - Charlie3 DNA MER1_type -4 2706 2648 24 0 0 0 chr12 75982108 75982132 -68300357 + AT_rich Low_complexity Low_complexity 1 24 0 2447 87 0 0 chr12 75982652 75982964 -68299525 - AluSx SINE Alu 0 312 1 1342 144 10 0 chr12 75983293 75983495 -68298994 - AluJo SINE Alu -108 204 1 22 0 0 0 chr12 75983500 75983522 -68298967 + AT_rich Low_complexity Low_complexity 1 22 0 1089 140 41 6 chr12 75984555 75984726 -68297763 - AluSg/x SINE Alu -2 310 134 1808 141 24 10 chr12 75985581 75985872 -68296617 + AluJb SINE Alu 4 298 -14 1342 83 0 0 chr12 75985932 75986101 -68296388 + AluSp SINE Alu 137 305 -8 734 165 30 55 chr12 75986552 75986716 -68295773 + MER5B DNA MER1_type 19 178 0 2051 136 0 19 chr12 75987250 75987560 -68294929 + AluSx SINE Alu 1 304 -8 431 377 19 6 chr12 75989107 75989266 -68293223 - MER91A DNA MER1_type -35 161 1 1134 150 18 82 chr12 75989599 75989819 -68292670 + AluJo SINE Alu 85 290 -22 261 0 0 0 chr12 75990200 75990229 -68292260 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1155 314 62 20 chr12 75991852 75992397 -68290092 - MLT1K LTR MaLR -17 571 4 252 300 100 105 chr12 75993120 75993401 -68289088 - L2 LINE L2 -1 3271 2990 2126 98 7 36 chr12 75993401 75993707 -68288782 + AluSx SINE Alu 4 300 -12 252 300 100 105 chr12 75993707 75994120 -68288369 - L2 LINE L2 -282 2990 2538 181 350 202 14 chr12 75994153 75994499 -68287990 - L2 LINE L2 -908 2406 1996 21 0 0 0 chr12 75994637 75994658 -68287831 + AT_rich Low_complexity Low_complexity 1 21 0 1866 138 0 23 chr12 75994676 75994981 -68287508 + AluJb SINE Alu 1 298 -14 214 364 0 13 chr12 75995269 75995346 -68287143 - MER5A DNA MER1_type 0 189 114 578 191 12 101 chr12 75995347 75995447 -68287042 + MER5B DNA MER1_type 26 107 -71 2397 91 0 3 chr12 75995447 75995755 -68286734 - AluSx SINE Alu -5 307 1 578 191 12 101 chr12 75995755 75995822 -68286667 + MER5B DNA MER1_type 107 178 0 268 283 80 18 chr12 75995822 75995934 -68286555 - MER5A DNA MER1_type -68 121 3 846 135 8 15 chr12 75996085 75996218 -68286271 - FLAM_C SINE Alu 0 133 2 423 242 36 117 chr12 75996502 75996750 -68285739 + L1MC4a LINE L1 5697 5924 -1884 2323 64 7 3 chr12 75996947 75997243 -68285246 + AluY SINE Alu 1 297 -14 260 191 0 0 chr12 75997292 75997334 -68285155 + L2 LINE L2 3226 3267 -5 456 227 65 65 chr12 75997449 75997603 -68284886 - MIR SINE MIR -19 243 90 360 111 0 0 chr12 75997616 75997670 -68284819 + (CA)n Simple_repeat Simple_repeat 2 55 0 2048 111 7 0 chr12 75997696 75997976 -68284513 - AluSx SINE Alu -30 282 1 235 305 122 46 chr12 75998243 75998374 -68284115 - MIR SINE MIR -31 231 91 217 225 0 0 chr12 75998443 75998483 -68284006 + (TG)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr12 75999306 75999327 -68283162 + AT_rich Low_complexity Low_complexity 1 21 0 415 212 30 40 chr12 75999760 75999859 -68282630 - AluJb SINE Alu -20 292 195 1028 194 87 38 chr12 75999971 76000260 -68282229 + MER58B DNA MER1_type 36 338 -3 316 375 18 0 chr12 76000769 76000881 -68281608 + MIR SINE MIR 12 125 -137 2112 128 0 0 chr12 76000951 76001252 -68281237 - AluSx SINE Alu 0 312 6 1735 161 11 11 chr12 76001262 76001548 -68280941 - AluSx SINE Alu -22 290 5 316 235 49 0 chr12 76001818 76001899 -68280590 + MIR SINE MIR 69 153 -109 198 286 0 0 chr12 76002312 76002361 -68280128 - MER5C DNA MER1_type -274 50 2 1844 157 4 4 chr12 76002374 76002655 -68279834 - AluJb SINE Alu -31 281 1 281 263 10 20 chr12 76002671 76002770 -68279719 + L2 LINE L2 2403 2500 -814 594 218 68 88 chr12 76002870 76003278 -68279211 + MLT1H LTR MaLR 152 595 0 183 194 0 0 chr12 76003324 76003360 -68279129 + L2 LINE L2 2611 2646 -668 940 119 0 25 chr12 76003370 76003529 -68278960 + AluY SINE Alu 157 311 0 411 340 97 44 chr12 76003666 76003987 -68278502 + L2 LINE L2 2815 3152 -120 22 35 0 0 chr12 76005204 76005233 -68277256 + AT_rich Low_complexity Low_complexity 1 29 0 2115 134 0 3 chr12 76010275 76010574 -68271915 + AluSx SINE Alu 1 298 -14 2038 145 0 25 chr12 76010905 76011223 -68271266 + AluSx SINE Alu 1 310 -2 30 0 0 0 chr12 76011254 76011284 -68271205 + AT_rich Low_complexity Low_complexity 1 30 0 1946 119 11 0 chr12 76011362 76011631 -68270858 - AluSx SINE Alu -5 307 36 2551 62 13 0 chr12 76011951 76012257 -68270232 - AluSp SINE Alu -3 310 1 407 228 103 0 chr12 76012259 76012404 -68270085 - MER104 DNA Tc2 -19 161 2 1588 155 4 8 chr12 76012907 76013185 -68269304 - AluJo SINE Alu 0 303 27 188 67 33 0 chr12 76013205 76013235 -68269254 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 405 289 194 45 chr12 76013967 76014548 -68267941 - L2 LINE L2 -743 2571 1904 219 306 71 61 chr12 76014671 76014769 -68267720 + L3 LINE CR1 1396 1494 -83 494 222 127 80 chr12 76015379 76015654 -68266835 + LTR33 LTR ERVL 228 515 -6 979 237 47 8 chr12 76015861 76016114 -68266375 + L2 LINE L2 2443 2705 -609 1662 190 3 40 chr12 76016128 76016449 -68266040 + AluJo SINE Alu 1 309 -3 635 204 43 19 chr12 76016453 76016664 -68265825 - LTR37A LTR ERV1 -2 424 209 253 65 109 0 chr12 76016739 76016785 -68265704 - L1MB4 LINE L1 0 6180 6130 1177 207 0 5 chr12 76016803 76017016 -68265473 - AluJo SINE Alu -14 298 87 3116 144 44 5 chr12 76017018 76017589 -68264900 - L1MB2 LINE L1 -118 6053 5461 894 143 15 0 chr12 76017590 76017723 -68264766 + AluSq/x SINE Alu 1 135 -178 1964 164 0 0 chr12 76017723 76018016 -68264473 + AluSx SINE Alu 1 293 -19 4185 190 108 47 chr12 76018017 76018503 -68263986 - L1MB2 LINE L1 -710 5470 5015 2282 93 3 3 chr12 76018503 76018793 -68263696 - AluSg SINE Alu -9 301 12 4185 190 108 47 chr12 76018793 76019565 -68262924 - L1MB2 LINE L1 -1165 5015 3955 2073 141 7 3 chr12 76019565 76019856 -68262633 - AluSx SINE Alu -20 292 1 4185 190 108 47 chr12 76019856 76020113 -68262376 - L1MB2 LINE L1 -2225 3955 3715 1464 283 12 61 chr12 76020301 76020915 -68261574 + L2 LINE L2 2735 3311 -2 314 104 254 0 chr12 76021807 76021874 -68260615 + MER2 DNA MER2_type 123 206 -139 311 277 0 0 chr12 76021906 76021971 -68260518 + MER2 DNA MER2_type 280 344 -1 2004 151 3 3 chr12 76022433 76022737 -68259752 - AluJb SINE Alu -8 304 1 3336 156 26 96 chr12 76023221 76023994 -68258495 - L1MC3 LINE L1 -255 7530 6704 2357 93 0 13 chr12 76023994 76024307 -68258182 - AluY SINE Alu 0 311 3 2098 68 0 4 chr12 76024309 76024573 -68257916 - AluSg SINE Alu -13 297 35 3336 156 26 96 chr12 76024573 76024653 -68257836 - L1MC3 LINE L1 -967 6818 6734 1396 99 204 59 chr12 76024653 76024909 -68257580 + MER46B DNA MER2_type 1 185 -2546 2099 101 4 7 chr12 76024909 76025207 -68257282 + AluSg SINE Alu 3 299 0 1396 99 204 59 chr12 76025207 76025253 -68257236 + MER46B DNA MER2_type 185 223 -13 364 98 16 0 chr12 76025279 76025340 -68257149 - L1MC4a LINE L1 -1103 6705 6644 321 79 32 16 chr12 76026025 76026088 -68256401 + (TA)n Simple_repeat Simple_repeat 1 64 0 22 0 0 0 chr12 76026095 76026117 -68256372 + AT_rich Low_complexity Low_complexity 1 22 0 1980 159 126 77 chr12 76027381 76027644 -68254845 + MER4A LTR ERV1 1 250 -350 1649 129 8 8 chr12 76027644 76027892 -68254597 + AluSx SINE Alu 57 304 -8 1980 159 126 77 chr12 76027892 76028200 -68254289 + MER4A LTR ERV1 250 600 0 406 295 186 38 chr12 76028657 76029628 -68252861 - L2 LINE L2 -23 3290 2188 277 277 43 57 chr12 76030068 76030209 -68252280 - MIR SINE MIR -2 260 122 22 56 0 0 chr12 76030457 76030493 -68251996 + AT_rich Low_complexity Low_complexity 1 36 0 1364 162 0 5 chr12 76030503 76030713 -68251776 - AluJb SINE Alu -18 294 86 2247 128 99 8 chr12 76030793 76031185 -68251304 - MSTA LTR MaLR 0 428 1 519 243 127 0 chr12 76031681 76031862 -68250627 + MIR SINE MIR 59 262 0 2232 132 0 0 chr12 76032327 76032638 -68249851 + AluSx SINE Alu 1 311 -1 446 315 30 20 chr12 76032731 76032931 -68249558 - MIR SINE MIR -1 261 60 5069 131 49 4 chr12 76032936 76033754 -68248735 + L1MC1 LINE L1 5470 6324 -9 654 194 8 22 chr12 76033756 76033890 -68248599 + FLAM_C SINE Alu 1 132 -1 297 167 33 17 chr12 76033929 76033989 -68248500 - MIR SINE MIR -199 63 3 205 179 0 0 chr12 76034061 76034100 -68248389 + (CAAG)n Simple_repeat Simple_repeat 3 41 0 1971 108 54 7 chr12 76034168 76034445 -68248044 + AluSc SINE Alu 1 290 -19 308 301 186 5 chr12 76035347 76035540 -68246949 - MIR SINE MIR -12 250 23 1986 157 0 3 chr12 76035621 76035920 -68246569 + AluJb SINE Alu 1 298 -14 289 335 95 13 chr12 76036102 76036260 -68246229 - MIR3 SINE MIR -37 171 1 2136 120 0 10 chr12 76037213 76037514 -68244975 - AluSx SINE Alu -14 298 1 329 302 18 19 chr12 76037567 76037701 -68244788 - MIR SINE MIR -62 146 30 1101 128 45 0 chr12 76038426 76038605 -68243884 - MER20 DNA MER1_type 0 219 33 2238 120 3 7 chr12 76039002 76039310 -68243179 + AluSx SINE Alu 1 307 -5 180 0 0 0 chr12 76039964 76039984 -68242505 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 389 309 94 17 chr12 76040026 76040207 -68242282 - L2 LINE L2 -2 3311 3117 842 272 118 58 chr12 76040301 76040819 -68241670 + LTR67 LTR ERVL 2 550 -7 4187 158 73 84 chr12 76041164 76042087 -68240402 - MER21A LTR ERV1 -18 913 2 1189 273 130 11 chr12 76042896 76043358 -68239131 - HAL1 LINE L1 -723 1784 1268 1906 105 13 76 chr12 76043358 76043370 -68239119 - AluSq SINE Alu -18 295 284 210 71 0 0 chr12 76043370 76043398 -68239091 + (TG)n Simple_repeat Simple_repeat 1 28 0 1906 105 13 76 chr12 76043398 76043700 -68238789 - AluSq SINE Alu -29 284 1 1435 186 73 7 chr12 76043721 76043995 -68238494 - AluJb SINE Alu -20 292 1 31 0 0 0 chr12 76044032 76044063 -68238426 + AT_rich Low_complexity Low_complexity 1 31 0 586 108 9 48 chr12 76044072 76044095 -68238394 - L1M3 LINE L1 -480 5691 5669 2034 113 0 63 chr12 76044095 76044414 -68238075 + AluSq SINE Alu 3 301 -12 586 108 9 48 chr12 76044414 76044522 -68237967 - L1M3 LINE L1 -502 5669 5570 299 207 25 66 chr12 76044521 76044642 -68237847 - HAL1 LINE L1 -1398 1109 994 * 605 294 56 0 chr12 76044650 76044830 -68237659 + MIR SINE MIR 9 198 -64 201 343 128 0 chr12 76045062 76045164 -68237325 + L2 LINE L2 3144 3258 -14 184 274 123 38 chr12 76045170 76045276 -68237213 + MIR SINE MIR 100 214 -48 259 220 20 60 chr12 76045908 76046008 -68236481 - L1MC/D LINE L1 -1909 5899 5804 720 256 33 105 chr12 76046024 76046356 -68236133 - MLT1J1 LTR MaLR -27 419 112 587 270 120 70 chr12 76046617 76046746 -68235743 + L1ME4a LINE L1 5504 5625 -496 2142 130 0 3 chr12 76046746 76047047 -68235442 - AluSx SINE Alu -12 300 1 587 270 120 70 chr12 76047047 76047307 -68235182 + L1ME4a LINE L1 5625 5934 -187 2004 128 7 3 chr12 76047307 76047595 -68234894 + AluJb SINE Alu 13 301 -11 587 270 120 70 chr12 76047595 76047721 -68234768 + L1ME4a LINE L1 5934 6052 -69 1792 155 24 3 chr12 76049526 76049816 -68232673 - AluJo SINE Alu -16 296 1 2437 52 10 33 chr12 76051149 76051455 -68231034 - AluY SINE Alu -12 299 1 605 237 169 23 chr12 76051868 76052087 -68230402 + MIR SINE MIR 2 252 -10 192 299 81 0 chr12 76052777 76052864 -68229625 - MIR SINE MIR -20 242 149 1180 58 0 0 chr12 76052956 76053095 -68229394 - AluY SINE Alu -9 302 164 1888 49 4 4 chr12 76053095 76053320 -68229169 - AluY SINE Alu -86 225 1 308 62 62 0 chr12 76053603 76053651 -68228838 + Alu SINE Alu 256 306 -2 2394 182 63 47 chr12 76054130 76054369 -68228120 + L1PB4 LINE L1 5525 5759 -397 6453 21 0 0 chr12 76054369 76055094 -68227395 + L1PA3 LINE L1 5431 6155 0 2394 182 63 47 chr12 76055094 76055474 -68227015 + L1PB4 LINE L1 5759 6154 -2 197 137 196 20 chr12 76055786 76055837 -68226652 + MIR SINE MIR 157 216 -46 1047 187 29 29 chr12 76056319 76056528 -68225961 + AluJb SINE Alu 84 292 -20 1373 131 0 23 chr12 76056599 76056820 -68225669 + AluSg/x SINE Alu 79 294 -16 1349 119 11 0 chr12 76056940 76057117 -68225372 - AluSq SINE Alu -134 179 1 709 135 19 70 chr12 76057720 76057988 -68224501 + MSTC LTR MaLR 1 303 -125 21 57 0 0 chr12 76059103 76059138 -68223351 + AT_rich Low_complexity Low_complexity 1 35 0 2170 121 7 3 chr12 76059216 76059522 -68222967 + AluSq SINE Alu 1 307 -6 1428 163 58 33 chr12 76059524 76059800 -68222689 + AluJo SINE Alu 1 283 -19 200 332 117 18 chr12 76059887 76060110 -68222379 - L3 LINE CR1 -24 1553 1309 611 274 28 19 chr12 76061857 76062069 -68220420 - MIR SINE MIR -17 245 32 23 0 0 0 chr12 76062595 76062618 -68219871 + AT_rich Low_complexity Low_complexity 1 23 0 715 233 68 6 chr12 76062813 76062976 -68219513 - FAM SINE Alu -11 174 2 2363 86 0 7 chr12 76063195 76063496 -68218993 - AluSg SINE Alu -11 299 1 22 35 0 0 chr12 76063978 76064007 -68218482 + AT_rich Low_complexity Low_complexity 1 29 0 1929 145 38 0 chr12 76064039 76064328 -68218161 - AluJo SINE Alu -12 300 1 1754 166 7 10 chr12 76064751 76065047 -68217442 - AluJb SINE Alu -17 295 1 2182 99 3 17 chr12 76065966 76066258 -68216231 - AluSg SINE Alu -22 288 1 2141 100 7 42 chr12 76066396 76066705 -68215784 - AluSp SINE Alu -13 300 3 1409 69 53 5 chr12 76066987 76067175 -68215314 - MER107 DNA MER1_type 0 197 1 312 230 187 22 chr12 76067207 76067346 -68215143 - MER112 DNA MER1_type -50 210 49 204 307 68 45 chr12 76067439 76067527 -68214962 + MIR SINE MIR 20 109 -153 275 208 114 87 chr12 76067582 76067731 -68214758 + MLT1J LTR MaLR 353 505 -6 2230 112 0 7 chr12 76067880 76068183 -68214306 + AluSx SINE Alu 1 301 -11 822 234 29 0 chr12 76068566 76068737 -68213752 + MER8 DNA MER2_type 2 177 -62 372 159 58 0 chr12 76068770 76068839 -68213650 - Tigger2 DNA MER2_type -2645 73 1 2025 129 13 13 chr12 76069672 76069975 -68212514 + AluSx SINE Alu 1 303 -9 440 83 0 17 chr12 76070039 76070099 -68212390 - Charlie3 DNA MER1_type -4 2706 2648 225 237 85 0 chr12 76070126 76070185 -68212304 + L1ME LINE L1 5575 5638 -528 24 0 0 0 chr12 76071656 76071680 -68210809 + AT_rich Low_complexity Low_complexity 1 24 0 2463 90 0 0 chr12 76072199 76072511 -68209978 - AluSx SINE Alu 0 312 1 334 257 221 35 chr12 76073672 76073898 -68208591 - HAL1 LINE L1 -4 2503 2236 2460 70 3 0 chr12 76074288 76074589 -68207900 + AluSx SINE Alu 1 302 -10 698 133 9 0 chr12 76074602 76074715 -68207774 - FLAM_A SINE Alu 0 142 29 1213 200 91 34 chr12 76074812 76075132 -68207357 + MER58B DNA MER1_type 1 338 -3 277 379 0 0 chr12 76075641 76075744 -68206745 + MIR SINE MIR 12 114 -148 2119 128 0 0 chr12 76075823 76076124 -68206365 - AluSx SINE Alu 0 312 6 1724 164 11 11 chr12 76076134 76076420 -68206069 - AluSx SINE Alu -22 290 5 293 211 53 0 chr12 76076695 76076771 -68205718 + MIR SINE MIR 74 153 -109 196 286 0 0 chr12 76077184 76077233 -68205256 - MER5C DNA MER1_type -274 50 2 1846 157 4 4 chr12 76077246 76077527 -68204962 - AluJb SINE Alu -31 281 1 275 263 10 20 chr12 76077543 76077642 -68204847 + L2 LINE L2 2403 2500 -814 696 225 72 97 chr12 76077742 76078147 -68204342 + MLT1H LTR MaLR 152 563 -4 181 194 0 0 chr12 76078196 76078232 -68204257 + L2 LINE L2 2611 2646 -668 1018 84 0 26 chr12 76078242 76078396 -68204093 + AluY SINE Alu 157 306 -5 410 335 102 43 chr12 76078515 76078840 -68203649 + L2 LINE L2 2809 3152 -120 22 35 0 0 chr12 76080057 76080086 -68202403 + AT_rich Low_complexity Low_complexity 1 29 0 2109 134 0 0 chr12 76085128 76085426 -68197063 + AluSx SINE Alu 1 298 -14 307 303 232 5 chr12 76085481 76085679 -68196810 + L1 LINE L1 4068 4310 -1836 2073 108 0 7 chr12 76085757 76086035 -68196454 + AluSx SINE Alu 1 276 -36 2251 77 0 11 chr12 76086996 76087310 -68195179 - AluY SINE Alu 0 311 1 385 320 33 50 chr12 76087921 76088102 -68194387 - MIR SINE MIR -19 243 66 381 233 186 13 chr12 76089099 76089268 -68193221 - MIR SINE MIR -10 252 56 212 346 56 19 chr12 76089939 76090046 -68192443 - MIR3 SINE MIR -25 183 73 411 68 0 0 chr12 76090274 76090333 -68192156 + (GA)n Simple_repeat Simple_repeat 2 60 0 255 61 0 0 chr12 76090348 76090381 -68192108 + (CAGG)n Simple_repeat Simple_repeat 2 34 0 603 115 52 10 chr12 76090382 76090478 -68192011 - FLAM_A SINE Alu -42 100 1 308 307 63 87 chr12 76091149 76091449 -68191040 + L2 LINE L2 2994 3286 -27 198 103 0 0 chr12 76091695 76091724 -68190765 + (GA)n Simple_repeat Simple_repeat 2 30 0 190 258 103 72 chr12 76092159 76092256 -68190233 + L2 LINE L2 3137 3236 -36 741 137 0 24 chr12 76092256 76092380 -68190109 - AluSp/q SINE Alu -11 302 182 33 43 0 0 chr12 76092402 76092449 -68190040 + AT_rich Low_complexity Low_complexity 1 47 0 6691 134 48 13 chr12 76092726 76093916 -68188573 + Tigger3b DNA MER2_type 1 1231 0 192 373 140 30 chr12 76094004 76094468 -68188021 - L2 LINE L2 -508 2806 2292 1939 136 7 17 chr12 76095894 76096195 -68186294 + AluJo SINE Alu 1 298 -14 32 26 0 0 chr12 76096195 76096234 -68186255 + AT_rich Low_complexity Low_complexity 1 39 0 736 170 15 30 chr12 76096424 76096559 -68185930 + FLAM_C SINE Alu 1 133 0 322 238 38 12 chr12 76096983 76097063 -68185426 + MIR3 SINE MIR 106 187 -21 244 254 0 34 chr12 76097400 76097459 -68185030 - L2 LINE L2 -13 3259 3203 495 302 111 0 chr12 76098193 76098382 -68184107 - MIR SINE MIR -25 237 28 316 257 14 0 chr12 76098390 76098460 -68184029 + MIR SINE MIR 188 258 -4 305 313 96 17 chr12 76098473 76098588 -68183901 + MIR SINE MIR 65 188 -74 196 339 138 0 chr12 76099488 76099618 -68182871 - L3b LINE CR1 -117 1466 1319 772 118 50 0 chr12 76099739 76099858 -68182631 - FLAM_C SINE Alu -18 125 1 621 319 91 66 chr12 76100008 76100435 -68182054 - L2 LINE L2 -7 3265 2828 342 0 0 0 chr12 76101266 76101304 -68181185 + (CA)n Simple_repeat Simple_repeat 1 38 0 1800 159 54 0 chr12 76102277 76102573 -68179916 + AluSx SINE Alu 1 312 0 758 168 0 0 chr12 76102698 76102817 -68179672 + FLAM_C SINE Alu 1 119 -24 997 225 77 5 chr12 76103143 76103365 -68179124 + MER8 DNA MER2_type 2 239 0 323 252 0 56 chr12 76103446 76103553 -68178936 + L1ME4a LINE L1 5785 5885 -236 2299 96 10 13 chr12 76103553 76103866 -68178623 + AluSx SINE Alu 1 312 0 1780 164 3 13 chr12 76103890 76104189 -68178300 + AluJo SINE Alu 1 296 -16 1424 115 59 4 chr12 76104191 76104444 -68178045 + L1MD3 LINE L1 7729 7995 0 238 232 126 11 chr12 76104554 76104649 -68177840 + L1ME4a LINE L1 5966 6071 -50 2270 92 0 19 chr12 76105527 76105842 -68176647 + AluY SINE Alu 1 309 -2 30 0 0 0 chr12 76105873 76105903 -68176586 + AT_rich Low_complexity Low_complexity 1 30 0 1935 108 12 0 chr12 76105993 76106251 -68176238 - AluSx SINE Alu -16 296 36 2527 62 13 0 chr12 76106571 76106877 -68175612 - AluSp SINE Alu -3 310 1 462 221 103 0 chr12 76106879 76107024 -68175465 - MER104 DNA Tc2 -19 161 2 1583 155 4 8 chr12 76107525 76107803 -68174686 - AluJo SINE Alu 0 303 27 188 67 33 0 chr12 76107823 76107853 -68174636 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 380 291 194 45 chr12 76108585 76109166 -68173323 - L2 LINE L2 -743 2571 1904 216 306 71 61 chr12 76109289 76109387 -68173102 + L3 LINE CR1 1396 1494 -83 590 229 125 79 chr12 76109992 76110271 -68172218 + LTR33 LTR ERVL 224 515 -6 980 237 47 8 chr12 76110478 76110731 -68171758 + L2 LINE L2 2443 2705 -609 1667 180 3 40 chr12 76110745 76111067 -68171422 + AluJo SINE Alu 1 310 -2 884 195 60 18 chr12 76111068 76111350 -68171139 - LTR37A LTR ERV1 0 426 133 265 65 109 0 chr12 76111356 76111402 -68171087 - L1MB2 LINE L1 -2 6169 6119 1172 202 0 5 chr12 76111420 76111633 -68170856 - AluJo SINE Alu -14 298 87 3302 144 44 5 chr12 76111635 76112206 -68170283 - L1MB2 LINE L1 -118 6053 5461 874 143 15 0 chr12 76112207 76112340 -68170149 + AluSq/x SINE Alu 1 135 -177 1921 167 0 0 chr12 76112340 76112633 -68169856 + AluSx SINE Alu 1 293 -19 4620 193 109 40 chr12 76112634 76113108 -68169381 - L1MB2 LINE L1 -710 5470 5030 2273 97 3 3 chr12 76113108 76113407 -68169082 - AluSg SINE Alu 0 310 12 4620 193 109 40 chr12 76113407 76114179 -68168310 - L1MB2 LINE L1 -1150 5030 3953 2051 141 7 3 chr12 76114179 76114470 -68168019 - AluSx SINE Alu -20 292 1 4620 193 109 40 chr12 76114470 76114727 -68167762 - L1MB2 LINE L1 -2227 3953 3715 1463 283 12 61 chr12 76114915 76115529 -68166960 + L2 LINE L2 2735 3311 -2 334 104 254 0 chr12 76116421 76116488 -68166001 + MER2 DNA MER2_type 123 206 -139 333 277 0 0 chr12 76116520 76116585 -68165904 + MER2 DNA MER2_type 280 344 -1 2049 146 3 0 chr12 76117047 76117348 -68165141 - AluJb SINE Alu -10 302 1 3504 156 25 105 chr12 76117832 76118614 -68163875 - L1MC3 LINE L1 -255 7530 6687 2341 95 0 7 chr12 76118614 76118920 -68163569 - AluY SINE Alu -5 306 3 2101 68 0 4 chr12 76118922 76119186 -68163303 - AluSg SINE Alu -13 297 35 3504 156 25 105 chr12 76119186 76119266 -68163223 - L1MC3 LINE L1 -966 6819 6734 1495 99 204 59 chr12 76119266 76119522 -68162967 + MER46B DNA MER2_type 1 185 -2546 2098 101 4 7 chr12 76119522 76119820 -68162669 + AluSg SINE Alu 3 299 0 1495 99 204 59 chr12 76119820 76119866 -68162623 + MER46B DNA MER2_type 185 223 -13 385 98 16 0 chr12 76119892 76119953 -68162536 - L1MC4a LINE L1 -1103 6705 6644 213 98 39 20 chr12 76120633 76120684 -68161805 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr12 76120691 76120713 -68161776 + AT_rich Low_complexity Low_complexity 1 22 0 264 288 0 15 chr12 76120946 76121012 -68161477 + L1MEd LINE L1 442 506 -5613 536 262 87 52 chr12 76121014 76121613 -68160876 + L1MEd LINE L1 1069 1686 -4443 318 261 80 84 chr12 76121690 76122001 -68160488 + L1MEd LINE L1 1767 2076 -4053 1705 175 36 7 chr12 76122013 76122316 -68160173 + AluJo SINE Alu 1 312 0 370 242 55 123 chr12 76122335 76122458 -68160031 + L1MEd LINE L1 2138 2268 -3861 2078 130 7 0 chr12 76122458 76122759 -68159730 + AluSx SINE Alu 1 303 -9 370 242 55 123 chr12 76122759 76123259 -68159230 + L1MEd LINE L1 2268 2718 -3411 22 35 0 0 chr12 76123918 76123947 -68158542 + AT_rich Low_complexity Low_complexity 1 29 0 2328 82 3 0 chr12 76125203 76125497 -68156992 + AluSp SINE Alu 1 295 -18 191 138 0 0 chr12 76125812 76125841 -68156648 + MIR SINE MIR 123 151 -111 21 36 0 0 chr12 76126080 76126108 -68156381 + AT_rich Low_complexity Low_complexity 1 28 0 747 215 41 66 chr12 76126154 76126417 -68156072 + MLT1A1 LTR MaLR 1 269 -105 440 221 76 23 chr12 76127186 76127317 -68155172 - L1MB7 LINE L1 -24 6160 6023 21 0 0 0 chr12 76127358 76127379 -68155110 + AT_rich Low_complexity Low_complexity 1 21 0 2214 130 0 0 chr12 76127504 76127804 -68154685 - AluSx SINE Alu -12 300 1 1841 167 0 13 chr12 76128096 76128395 -68154094 - AluJo SINE Alu -17 295 1 251 264 36 114 chr12 76128707 76128778 -68153711 + L2 LINE L2 3176 3232 -81 2045 138 20 0 chr12 76128778 76129074 -68153415 - AluSx SINE Alu -10 302 1 251 264 36 114 chr12 76129074 76129142 -68153347 + L2 LINE L2 3232 3304 -9 2080 132 11 0 chr12 76129200 76129506 -68152983 - AluSx SINE Alu 0 309 1 1229 287 77 17 chr12 76129548 76130060 -68152429 + L2 LINE L2 2510 3052 -261 670 215 0 15 chr12 76131364 76131499 -68150990 + FLAM_A SINE Alu 1 133 0 2356 85 0 0 chr12 76131822 76132117 -68150372 + AluY SINE Alu 1 295 -16 2033 114 10 14 chr12 76132688 76132978 -68149511 + AluSq SINE Alu 1 289 -24 186 43 0 0 chr12 76133179 76133202 -68149287 + (GGAAA)n Simple_repeat Simple_repeat 4 26 0 5528 191 118 10 chr12 76133722 76134984 -68147505 + L1PA13 LINE L1 1 1398 -5389 8552 186 14 3 chr12 76134986 76136606 -68145883 + L1PA13 LINE L1 2516 4117 -2697 297 0 0 0 chr12 76136606 76136639 -68145850 + (CA)n Simple_repeat Simple_repeat 2 34 0 8552 186 14 3 chr12 76136639 76136916 -68145573 + L1PA13 LINE L1 4117 4390 -2424 2536 65 3 0 chr12 76136916 76137225 -68145264 + AluY SINE Alu 1 310 -1 8552 186 14 3 chr12 76137225 76139415 -68143074 + L1PA13 LINE L1 4390 6795 -19 2105 85 67 0 chr12 76139817 76140099 -68142390 - AluSp SINE Alu -12 301 1 1894 131 3 24 chr12 76140105 76140396 -68142093 - AluJb SINE Alu -17 295 11 2092 99 3 10 chr12 76141369 76141681 -68140808 - Tigger4(Zombi) DNA MER2_type 0 2731 2422 1149 168 19 0 chr12 76141685 76141894 -68140595 - Tigger4(Zombi) DNA MER2_type -2511 220 8 2435 51 3 0 chr12 76142313 76142633 -68139856 + AluSp SINE Alu 1 321 0 492 290 164 5 chr12 76143643 76143850 -68138639 + MIR SINE MIR 2 241 -21 2176 123 3 0 chr12 76143985 76144278 -68138211 - AluSx SINE Alu -18 294 1 462 281 132 51 chr12 76144310 76144720 -68137769 + LTR67 LTR ERVL 111 553 -4 29 47 0 0 chr12 76144854 76144897 -68137592 + AT_rich Low_complexity Low_complexity 1 43 0 182 229 125 0 chr12 76145764 76145812 -68136677 - MIR SINE MIR -65 143 90 276 281 133 69 chr12 76146953 76147156 -68135333 - MIR SINE MIR -6 256 41 321 254 88 0 chr12 76147325 76147439 -68135050 - L1ME LINE L1 -392 5729 5606 183 314 157 0 chr12 76147513 76147583 -68134906 + L2 LINE L2 3186 3266 -6 362 239 106 0 chr12 76148028 76148141 -68134348 - MIR SINE MIR -28 234 110 24 32 0 0 chr12 76148324 76148355 -68134134 + AT_rich Low_complexity Low_complexity 1 31 0 315 197 106 101 chr12 76148978 76149166 -68133323 + HAL1 LINE L1 49 237 -2270 1172 150 47 17 chr12 76149175 76149408 -68133081 + L1MB3 LINE L1 5944 6183 0 276 326 22 15 chr12 76149539 76149674 -68132815 + HAL1 LINE L1 418 553 -1954 824 254 142 35 chr12 76149682 76150232 -68132257 + HAL1 LINE L1 1889 2497 -10 2562 64 3 0 chr12 76150774 76151086 -68131403 - AluSp SINE Alu 0 313 1 23 0 0 0 chr12 76151245 76151268 -68131221 + AT_rich Low_complexity Low_complexity 1 23 0 207 186 235 78 chr12 76151521 76151623 -68130866 - L2 LINE L2 -14 3299 3182 2972 96 29 2 chr12 76151653 76152068 -68130421 - MSTC LTR MaLR 0 428 3 1478 189 40 18 chr12 76153670 76153790 -68128699 + AluJo SINE Alu 1 117 -195 270 81 0 0 chr12 76153790 76153827 -68128662 + (CAATA)n Simple_repeat Simple_repeat 2 38 0 1478 189 40 18 chr12 76153827 76153981 -68128508 + AluJo SINE Alu 117 281 -31 28 79 0 0 chr12 76154156 76154219 -68128270 + AT_rich Low_complexity Low_complexity 1 63 0 234 271 0 0 chr12 76154274 76154322 -68128167 - Tigger5 DNA MER2_type -1 2322 2275 1103 140 0 0 chr12 76154448 76154605 -68127884 - AluSx SINE Alu -14 298 142 403 311 45 0 chr12 76154643 76154775 -68127714 + L2 LINE L2 3158 3295 -18 966 121 0 0 chr12 76154775 76154907 -68127582 - AluSx SINE Alu -181 132 1 1703 215 139 44 chr12 76155328 76155895 -68126594 + MLT1E3 LTR MaLR 2 622 -2 231 61 0 0 chr12 76155929 76155962 -68126527 + (CTG)n Simple_repeat Simple_repeat 2 34 0 444 321 80 0 chr12 76156083 76156270 -68126219 + L2 LINE L2 3106 3307 -6 811 160 8 0 chr12 76156295 76156426 -68126063 + FLAM_C SINE Alu 1 132 -1 2100 129 0 0 chr12 76156563 76156879 -68125610 + AluSx SINE Alu 1 316 0 703 206 73 0 chr12 76158618 76158822 -68123667 - MER113 DNA MER1_type? -228 293 75 420 317 159 14 chr12 76159755 76159963 -68122526 + MIR SINE MIR 25 262 0 1263 89 103 28 chr12 76160156 76160275 -68122214 + MER30 DNA MER1_type 1 110 -120 333 0 0 0 chr12 76160275 76160312 -68122177 + (CA)n Simple_repeat Simple_repeat 2 38 0 1263 89 103 28 chr12 76160312 76160406 -68122083 + MER30 DNA MER1_type 110 230 0 792 234 129 38 chr12 76160938 76161193 -68121296 + L2 LINE L2 2713 2943 -370 1854 188 28 3 chr12 76161193 76161549 -68120940 + MLT1A1 LTR MaLR 1 365 0 792 234 129 38 chr12 76161549 76161773 -68120716 + L2 LINE L2 2943 3313 0 246 302 108 16 chr12 76161831 76161960 -68120529 + MIR SINE MIR 102 242 -20 2186 84 3 7 chr12 76162378 76162675 -68119814 - AluY SINE Alu -15 296 1 1146 150 16 141 chr12 76162879 76163192 -68119297 - AluJo SINE Alu -6 306 33 2210 120 10 0 chr12 76163759 76164060 -68118429 + AluSq SINE Alu 1 304 -9 438 200 12 0 chr12 76164119 76164204 -68118285 + MER96 DNA MER1_type? 85 170 -5 * 635 176 9 0 chr12 76164201 76164309 -68118180 + MER20 DNA MER1_type 109 217 -2 487 283 150 0 chr12 76164326 76164513 -68117976 + MIR SINE MIR 48 262 0 2455 88 0 0 chr12 76165082 76165390 -68117099 - AluSp SINE Alu -4 309 2 1283 170 90 52 chr12 76167030 76167319 -68115170 + AluJo SINE Alu 3 302 0 236 202 143 12 chr12 76167338 76167422 -68115067 + L1ME LINE L1 5725 5819 -302 1694 174 3 13 chr12 76167432 76167730 -68114759 + AluJb SINE Alu 1 295 -17 2173 113 3 0 chr12 76169139 76169431 -68113058 - AluSx SINE Alu -9 303 11 491 264 13 52 chr12 76169643 76169798 -68112691 + MIR SINE MIR 9 157 -105 13670 106 46 68 chr12 76170217 76172688 -68109801 - Tigger1 DNA MER2_type 0 2418 1 1876 137 53 0 chr12 76173063 76173347 -68109142 + AluSq SINE Alu 1 299 -14 2368 50 0 0 chr12 76173349 76173663 -68108826 + AluY SINE Alu 1 314 0 411 21 0 0 chr12 76173694 76173742 -68108747 + (TG)n Simple_repeat Simple_repeat 2 49 0 745 186 8 0 chr12 76173742 76173860 -68108629 - FLAM_A SINE Alu -14 119 1 2445 81 7 0 chr12 76174441 76174750 -68107739 + AluY SINE Alu 1 311 0 403 258 60 20 chr12 76174964 76175115 -68107374 + L1MD2 LINE L1 5555 5711 -410 22 0 0 0 chr12 76175128 76175150 -68107339 + AT_rich Low_complexity Low_complexity 1 22 0 876 225 173 53 chr12 76175394 76175811 -68106678 + L1MD2 LINE L1 5880 6346 -13 220 289 206 10 chr12 76176220 76176317 -68106172 + L2 LINE L2 3147 3262 -10 212 128 0 21 chr12 76176726 76176773 -68105716 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 838 220 103 33 chr12 76176878 76177178 -68105311 + L1MC4 LINE L1 7305 7625 -417 920 182 104 64 chr12 76177223 76177250 -68105239 + L1MC4 LINE L1 7751 7775 -267 1672 157 30 49 chr12 76177250 76177555 -68104934 + AluJo SINE Alu 1 299 -13 920 182 104 64 chr12 76177555 76177807 -68104682 + L1MC4 LINE L1 7775 8041 -1 685 210 64 144 chr12 76177922 76178207 -68104282 + L1MEd LINE L1 691 997 -1493 1003 203 0 0 chr12 76178207 76178365 -68104124 + FAM SINE Alu 1 158 -17 685 210 64 144 chr12 76178365 76178390 -68104099 + L1MEd LINE L1 997 1022 -1468 2091 167 15 0 chr12 76178390 76178732 -68103757 + L1MB4 LINE L1 5834 6180 0 685 210 64 144 chr12 76178732 76179143 -68103346 + L1MEd LINE L1 1022 1448 -1042 2294 112 3 0 chr12 76179143 76179448 -68103041 + AluSc SINE Alu 3 308 -1 685 210 64 144 chr12 76179448 76179684 -68102805 + L1MEd LINE L1 1448 1701 -789 261 0 0 0 chr12 76180071 76180100 -68102389 + (CA)n Simple_repeat Simple_repeat 2 30 0 216 108 54 0 chr12 76180246 76180283 -68102206 - L2 LINE L2 -5 3308 3270 976 189 54 0 chr12 76180354 76180539 -68101950 - MER3 DNA MER1_type 0 209 15 23 54 0 0 chr12 76180576 76180613 -68101876 + AT_rich Low_complexity Low_complexity 1 37 0 2422 60 0 3 chr12 76180784 76181107 -68101382 + AluY SINE Alu 1 322 0 2588 45 0 7 chr12 76181235 76181543 -68100946 + AluY SINE Alu 1 306 -5 26 0 0 0 chr12 76181590 76181616 -68100873 + AT_rich Low_complexity Low_complexity 1 26 0 1013 52 0 15 chr12 76181710 76181844 -68100645 + AluY SINE Alu 175 306 -5 26 0 0 0 chr12 76181891 76181917 -68100572 + AT_rich Low_complexity Low_complexity 1 26 0 250 328 139 8 chr12 76183376 76183498 -68098991 - MIR SINE MIR -118 144 7 305 301 44 61 chr12 76184655 76184884 -68097605 + L2 LINE L2 2150 2374 -940 2309 90 0 0 chr12 76184947 76185236 -68097253 + AluSc SINE Alu 1 289 -20 386 302 163 14 chr12 76185762 76185977 -68096512 + MIR SINE MIR 2 248 -14 204 109 36 36 chr12 76186370 76186425 -68096064 + (CATAG)n Simple_repeat Simple_repeat 3 57 0 1877 162 10 0 chr12 76186696 76186999 -68095490 + AluJo SINE Alu 2 307 -5 230 221 287 0 chr12 76188906 76189028 -68093461 - MIR3 SINE MIR -49 159 3 539 244 30 7 chr12 76189045 76189180 -68093309 - MIR SINE MIR -1 261 124 2978 3 0 0 chr12 76189592 76189908 -68092581 + AluYb8 SINE Alu 1 316 -2 191 273 118 45 chr12 76190510 76190620 -68091869 - MIR SINE MIR -134 128 11 572 115 23 11 chr12 76190622 76190709 -68091780 - MER5A DNA MER1_type 0 189 102 * 966 160 18 12 chr12 76190702 76190871 -68091618 + MER5A DNA MER1_type 20 189 0 500 269 146 32 chr12 76191126 76191345 -68091144 - MIR SINE MIR -6 256 13 216 396 59 0 chr12 76191351 76191452 -68091037 + MIR SINE MIR 33 139 -123 405 276 49 44 chr12 76192463 76192666 -68089823 + Charlie8 DNA MER1_type 32 235 -2182 2301 107 0 3 chr12 76192871 76193171 -68089318 - AluSx SINE Alu -13 299 1 27 0 0 0 chr12 76193346 76193373 -68089116 + AT_rich Low_complexity Low_complexity 1 27 0 333 298 12 0 chr12 76193398 76193482 -68089007 - MIR SINE MIR -171 91 7 227 290 0 56 chr12 76194145 76194252 -68088237 + MIR SINE MIR 116 216 -46 674 300 31 26 chr12 76194445 76194672 -68087817 + MIR SINE MIR 27 254 -8 1637 177 53 0 chr12 76194895 76195178 -68087311 - AluJb SINE Alu -14 298 1 748 207 0 0 chr12 76195431 76195547 -68086942 - FLAM_A SINE Alu -17 116 1 2486 75 0 28 chr12 76195887 76196209 -68086280 - AluSq SINE Alu 0 313 1 964 146 6 37 chr12 76197646 76197781 -68084708 + AluSg/x SINE Alu 146 277 -33 390 21 0 0 chr12 76197781 76197828 -68084661 + (CATA)n Simple_repeat Simple_repeat 2 48 0 964 146 6 37 chr12 76197828 76197856 -68084633 + AluSg/x SINE Alu 277 304 -6 234 91 0 0 chr12 76197937 76197970 -68084519 + (TG)n Simple_repeat Simple_repeat 2 34 0 209 333 0 0 chr12 76198132 76198198 -68084291 - L2 LINE L2 -631 2683 2618 21 57 0 0 chr12 76198243 76198278 -68084211 + AT_rich Low_complexity Low_complexity 1 35 0 616 211 34 7 chr12 76198331 76198478 -68084011 + L2 LINE L2 2082 2232 -1082 271 203 29 43 chr12 76198595 76198664 -68083825 - MER69A DNA AcHobo -74 103 36 262 222 0 19 chr12 76199907 76199961 -68082528 + GA-rich Low_complexity Low_complexity 2 54 0 450 215 131 94 chr12 76200135 76200284 -68082205 + L1MC/D LINE L1 4980 5122 -1117 2259 106 7 0 chr12 76200284 76200587 -68081902 + AluSq SINE Alu 1 305 -8 450 215 131 94 chr12 76200587 76200718 -68081771 + L1MC/D LINE L1 5122 5247 -992 1828 186 0 3 chr12 76200718 76201029 -68081460 + AluJb SINE Alu 1 310 -2 450 215 131 94 chr12 76201029 76201234 -68081255 + L1MC/D LINE L1 5247 5496 -743 1208 175 26 136 chr12 76201475 76201659 -68080830 + L1MC4 LINE L1 6460 6582 -1460 2149 116 3 0 chr12 76201659 76201953 -68080536 + AluSx SINE Alu 1 295 -17 1208 175 26 136 chr12 76201953 76202151 -68080338 + L1MC4 LINE L1 6582 6800 -1242 1514 334 50 42 chr12 76202152 76202878 -68079611 + L2 LINE L2 2155 2874 -439 1953 131 28 7 chr12 76202878 76203160 -68079329 + AluSx SINE Alu 1 288 -24 1514 334 50 42 chr12 76203160 76203320 -68079169 + L2 LINE L2 2874 3031 -282 2240 111 3 0 chr12 76203320 76203618 -68078871 + AluSq SINE Alu 3 301 -12 1514 334 50 42 chr12 76203618 76203874 -68078615 + L2 LINE L2 3031 3305 -8 6254 148 4 17 chr12 76203877 76203996 -68078493 + L1MA4 LINE L1 5236 5355 -945 753 75 0 0 chr12 76203996 76204090 -68078399 - L1PA6 LINE L1 -2 6152 6059 6254 148 4 17 chr12 76204090 76205049 -68077440 + L1MA4 LINE L1 5355 6299 -1 399 275 132 58 chr12 76205513 76205702 -68076787 - L2 LINE L2 -546 2768 2566 331 291 101 25 chr12 76205764 76205922 -68076567 + L1M4 LINE L1 4876 5045 -1101 1921 128 37 0 chr12 76206089 76206214 -68076275 + AluSx SINE Alu 1 120 -192 207 0 0 0 chr12 76206214 76206237 -68076252 + (CA)n Simple_repeat Simple_repeat 2 24 0 1921 128 37 0 chr12 76206237 76206407 -68076082 + AluSx SINE Alu 120 307 -5 290 241 25 0 chr12 76206421 76206500 -68075989 + L1M4 LINE L1 5009 5089 -1057 1337 236 68 8 chr12 76206614 76206965 -68075524 + L2 LINE L2 440 811 -2503 680 191 0 13 chr12 76206991 76207143 -68075346 + L1MA4 LINE L1 6150 6299 -1 41 0 0 32 chr12 76207289 76207308 -68075181 + AT_rich Low_complexity Low_complexity 1 19 -42 2515 74 3 0 chr12 76207308 76207619 -68074870 + AluSp SINE Alu 2 313 0 333 0 0 0 chr12 76207621 76207658 -68074831 + (TA)n Simple_repeat Simple_repeat 2 38 0 41 0 0 32 chr12 76207658 76207698 -68074791 + AT_rich Low_complexity Low_complexity 20 61 0 4177 242 69 49 chr12 76207719 76207804 -68074685 + L2 LINE L2 793 875 -2439 1549 154 18 25 chr12 76207804 76207969 -68074520 - AluJo SINE Alu -15 297 133 2157 137 0 3 chr12 76207969 76208282 -68074207 - AluSx SINE Alu 0 312 1 1549 154 18 25 chr12 76208282 76208395 -68074094 - AluJo SINE Alu -179 133 21 4177 242 69 49 chr12 76208395 76209373 -68073116 + L2 LINE L2 875 1892 -1422 1732 170 96 48 chr12 76209373 76209749 -68072740 - MSTD LTR MaLR -2 394 1 4177 242 69 49 chr12 76209749 76210039 -68072450 + L2 LINE L2 1892 2175 -1139 475 251 34 155 chr12 76210176 76210499 -68071990 + MLT1I LTR MaLR 100 383 -26 1206 267 39 22 chr12 76210526 76210885 -68071604 + L2 LINE L2 2261 2625 -689 1435 265 63 40 chr12 76211065 76211300 -68071189 + L2 LINE L2 2545 2773 -540 384 59 0 0 chr12 76211300 76211351 -68071138 + (CA)n Simple_repeat Simple_repeat 1 51 0 1435 265 63 40 chr12 76211351 76211789 -68070700 + L2 LINE L2 2773 3246 -67 1953 228 193 92 chr12 76212008 76212353 -68070136 + HAL1 LINE L1 539 848 -1659 2054 93 3 45 chr12 76212353 76212643 -68069846 + AluSg SINE Alu 1 278 -32 234 0 0 0 chr12 76212645 76212671 -68069818 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1953 228 193 92 chr12 76212671 76213308 -68069181 + HAL1 LINE L1 848 1419 -1088 2159 114 3 3 chr12 76213308 76213606 -68068883 - AluSx SINE Alu -10 302 5 1953 228 193 92 chr12 76213606 76213990 -68068499 + HAL1 LINE L1 1419 2047 -460 2661 33 3 0 chr12 76214020 76214325 -68068164 + AluY SINE Alu 1 306 -5 2169 240 48 36 chr12 76215227 76215326 -68067163 + MLT1E LTR MaLR 3 99 -494 2152 116 17 3 chr12 76215326 76215628 -68066861 - AluSg SINE Alu -4 306 1 2169 240 48 36 chr12 76215628 76216112 -68066377 + MLT1E LTR MaLR 99 593 0 181 277 31 15 chr12 76216199 76216264 -68066225 - MER5A DNA MER1_type 0 189 124 2302 111 0 19 chr12 76216314 76216630 -68065859 - AluSx SINE Alu -2 310 1 2058 108 14 17 chr12 76216644 76216939 -68065550 - AluSx SINE Alu -18 294 1 214 214 0 0 chr12 76216944 76216986 -68065503 - MER5A DNA MER1_type -120 69 28 1770 159 0 63 chr12 76217405 76217738 -68064751 + AluJb SINE Alu 1 312 0 327 65 0 0 chr12 76217783 76217829 -68064660 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 200 314 129 43 chr12 76217838 76217978 -68064511 - L2 LINE L2 -38 3275 3124 250 232 7 122 chr12 76219382 76219487 -68063002 - L1ME LINE L1 -298 5823 5742 2204 116 0 0 chr12 76219487 76219780 -68062709 - AluSx SINE Alu -19 293 1 250 232 7 122 chr12 76219780 76219839 -68062650 - L1ME LINE L1 -379 5742 5678 330 237 41 10 chr12 76220498 76220595 -68061894 + MIR3 SINE MIR 104 203 -5 340 232 205 9 chr12 76220694 76220806 -68061683 + MER5A DNA MER1_type 7 140 -49 22 0 0 0 chr12 76220962 76220984 -68061505 + AT_rich Low_complexity Low_complexity 1 22 0 701 199 0 61 chr12 76220984 76221115 -68061374 - FLAM_A SINE Alu -10 123 1 2419 172 36 47 chr12 76221320 76221790 -68060699 + MLT1C LTR MaLR 3 467 0 639 221 75 143 chr12 76222102 76222300 -68060189 + L2 LINE L2 1501 1666 -1648 2401 65 0 3 chr12 76222300 76222607 -68059882 + AluY SINE Alu 5 310 -1 639 221 75 143 chr12 76222607 76222757 -68059732 + L2 LINE L2 1666 1825 -1489 1622 183 40 100 chr12 76222757 76223141 -68059348 - L1ME3A LINE L1 0 6170 5819 1016 227 32 9 chr12 76223141 76223357 -68059132 - MER58A DNA MER1_type -3 221 1 1622 183 40 100 chr12 76223357 76223453 -68059036 - L1ME3A LINE L1 -351 5819 5719 3094 246 167 24 chr12 76223527 76224856 -68057633 + L2 LINE L2 1822 3312 -1 712 272 75 31 chr12 76225712 76225940 -68056549 + MIR SINE MIR 2 239 -23 405 0 0 0 chr12 76225943 76225988 -68056501 + (CA)n Simple_repeat Simple_repeat 2 46 0 1470 209 44 68 chr12 76226416 76226799 -68055690 + MLT1A2 LTR MaLR 1 374 0 1726 188 103 37 chr12 76227305 76227741 -68054748 - MLT1C LTR MaLR -2 465 1 234 311 42 25 chr12 76228329 76228448 -68054041 - MIR SINE MIR -50 212 92 21 0 0 0 chr12 76228609 76228630 -68053859 + AT_rich Low_complexity Low_complexity 1 21 0 1524 161 36 25 chr12 76228935 76229214 -68053275 - AluJb SINE Alu -4 308 27 198 0 0 0 chr12 76229285 76229307 -68053182 + (T)n Simple_repeat Simple_repeat 1 22 0 208 154 0 26 chr12 76229565 76229604 -68052885 + T-rich Low_complexity Low_complexity 5 42 0 1706 291 98 30 chr12 76229721 76230679 -68051810 - L1MEc LINE L1 -5330 1066 44 1840 169 0 22 chr12 76231060 76231379 -68051110 - AluJo SINE Alu 0 312 1 2291 108 0 0 chr12 76232424 76232719 -68049770 + AluSx SINE Alu 1 295 -17 1633 160 35 25 chr12 76232851 76233133 -68049356 - AluJo SINE Alu -27 285 1 2210 84 0 11 chr12 76233872 76234191 -68048298 + AluSp SINE Alu 1 316 0 2201 123 40 35 chr12 76234208 76234581 -68047908 - THE1C LTR MaLR 0 375 1 1101 306 54 30 chr12 76234853 76235313 -68047176 - MLT1L LTR MaLR -25 590 120 329 355 86 29 chr12 76235352 76235791 -68046698 + L2 LINE L2 2684 3157 -115 2053 140 3 0 chr12 76236438 76236745 -68045744 - AluJb SINE Alu -4 308 1 423 254 53 41 chr12 76237209 76237378 -68045111 + Charlie8 DNA MER1_type 92 262 -2155 622 219 80 13 chr12 76237621 76237845 -68044644 - MER69 DNA AcHobo -93 2433 2195 618 111 11 0 chr12 76237845 76237935 -68044554 + L1MB8 LINE L1 5697 5787 -397 781 201 0 0 chr12 76237938 76238072 -68044417 + FLAM_A SINE Alu 1 134 -8 903 217 49 37 chr12 76238072 76238316 -68044173 + L1MB8 LINE L1 5777 6023 -155 253 161 0 18 chr12 76238338 76238394 -68044095 - L1MB4 LINE L1 0 6180 6126 192 343 124 19 chr12 76239319 76239424 -68043065 + L2 LINE L2 3123 3238 -34 296 318 74 87 chr12 76239425 76239575 -68042914 - L2 LINE L2 -1 3271 3125 1958 148 7 3 chr12 76239575 76239885 -68042604 + AluJo SINE Alu 1 311 -1 296 318 74 87 chr12 76239885 76240033 -68042456 - L2 LINE L2 -147 3125 2977 240 155 35 35 chr12 76240054 76240170 -68042319 + (TA)n Simple_repeat Simple_repeat 2 117 0 765 190 0 8 chr12 76240171 76240292 -68042197 - FLAM_A SINE Alu -13 120 1 1458 117 0 37 chr12 76240635 76240849 -68041640 - AluSg/x SINE Alu -22 288 83 180 0 0 0 chr12 76241218 76241238 -68041251 + (T)n Simple_repeat Simple_repeat 1 20 0 1978 154 0 7 chr12 76241635 76241940 -68040549 + AluJb SINE Alu 1 303 -9 189 0 0 0 chr12 76241975 76241996 -68040493 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2282 91 0 10 chr12 76242006 76242304 -68040185 - AluSq SINE Alu -18 295 1 1863 132 53 0 chr12 76243521 76243802 -68038687 - AluSq SINE Alu -17 296 1 1643 156 16 45 chr12 76244567 76244875 -68037614 + AluJo SINE Alu 4 302 -10 2282 125 0 0 chr12 76245213 76245525 -68036964 - AluSx SINE Alu 0 312 1 707 135 0 0 chr12 76245720 76245824 -68036665 - AluJo SINE Alu -3 309 206 610 246 7 21 chr12 76245820 76245962 -68036527 - AluJo SINE Alu -171 141 2 * 285 220 65 108 chr12 76246046 76246260 -68036229 + L2 LINE L2 2855 3059 -213 215 250 93 153 chr12 76246311 76246420 -68036069 + MIR SINE MIR 30 119 -143 2275 86 3 13 chr12 76246420 76246723 -68035766 - AluSg SINE Alu -8 302 3 215 250 93 153 chr12 76246723 76246849 -68035640 + MIR SINE MIR 119 251 -11 183 204 37 56 chr12 76246902 76246956 -68035533 + L2 LINE L2 3261 3313 0 1356 269 45 60 chr12 76246984 76247665 -68034824 + L2 LINE L2 2580 3263 -50 1932 169 0 0 chr12 76247665 76247973 -68034516 + AluJb SINE Alu 1 308 -4 1356 269 45 60 chr12 76247973 76248021 -68034468 + L2 LINE L2 3263 3310 -3 246 288 63 18 chr12 76248647 76248758 -68033731 + L3 LINE CR1 1338 1453 -124 1202 165 27 46 chr12 76248759 76248984 -68033505 + L1MB8 LINE L1 5919 6140 -38 1941 129 28 127 chr12 76248984 76249417 -68033072 - MLT1B LTR MaLR 0 390 1 1202 165 27 46 chr12 76249417 76249452 -68033037 + L1MB8 LINE L1 6140 6174 -4 2224 119 0 0 chr12 76249466 76249760 -68032729 - AluSx SINE Alu -18 294 1 898 297 28 0 chr12 76249760 76250009 -68032480 - MIR SINE MIR 0 262 7 216 296 0 0 chr12 76250063 76250134 -68032355 - MIR SINE MIR -108 154 84 348 327 0 0 chr12 76250490 76250597 -68031892 + L1ME4a LINE L1 5508 5614 -507 2559 77 3 0 chr12 76251079 76251391 -68031098 + AluSp SINE Alu 1 313 0 323 275 0 0 chr12 76251706 76251786 -68030703 - MIR SINE MIR -5 257 178 2256 135 0 0 chr12 76251980 76252291 -68030198 + AluJb SINE Alu 1 311 -1 465 225 133 13 chr12 76252291 76252442 -68030047 + L1ME4a LINE L1 5730 5898 -223 243 309 0 11 chr12 76252451 76252545 -68029944 + L1ME4a LINE L1 5342 5434 -687 1203 210 0 0 chr12 76252550 76252764 -68029725 + AluJb SINE Alu 85 298 -14 936 240 113 10 chr12 76252814 76253114 -68029375 + L1ME4a LINE L1 5495 5825 -296 235 276 11 23 chr12 76253149 76253213 -68029276 - LTR33A LTR ERVL -4 519 455 3388 184 62 27 chr12 76253213 76253920 -68028569 + MER44D DNA MER2_type 2 605 0 235 276 11 23 chr12 76253920 76253942 -68028547 - LTR33A LTR ERVL -68 455 434 1408 227 35 59 chr12 76254378 76254784 -68027705 - MSTD LTR MaLR 0 396 1 686 332 106 31 chr12 76254787 76255372 -68027117 - L2 LINE L2 -876 2438 1810 2241 122 0 0 chr12 76255494 76255797 -68026692 - AluSx SINE Alu -7 305 3 1311 194 100 41 chr12 76255960 76256071 -68026418 + MER58B DNA MER1_type 1 104 -2316 2365 107 10 0 chr12 76256071 76256380 -68026109 + AluSx SINE Alu 1 312 0 1311 194 100 41 chr12 76256380 76256588 -68025901 + MER58B DNA MER1_type 104 339 -2 237 231 77 0 chr12 76257764 76257829 -68024660 - L1ME LINE L1 -409 5753 5684 352 248 81 95 chr12 76257836 76257878 -68024611 - L1ME LINE L1 -739 5432 5391 2258 135 3 0 chr12 76257878 76258190 -68024299 - 7SLRNA srpRNA srpRNA -6 314 2 352 248 81 95 chr12 76258190 76258385 -68024104 - L1ME LINE L1 -780 5391 5391 881 112 0 70 chr12 76258385 76258528 -68023961 - FLAM_C SINE Alu 0 133 1 352 248 81 95 chr12 76258528 76258654 -68023835 - L1ME LINE L1 -779 5392 5266 350 288 196 0 chr12 76258761 76258914 -68023575 + MIR SINE MIR 2 184 -78 4842 137 68 25 chr12 76258961 76259915 -68022574 - L1MB7 LINE L1 -16 6168 5256 195 69 0 0 chr12 76259915 76259944 -68022545 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2156 94 11 0 chr12 76259949 76260225 -68022264 - AluY SINE Alu -32 279 1 4842 137 68 25 chr12 76260225 76260264 -68022225 - L1MB7 LINE L1 -931 5253 5217 2105 131 3 7 chr12 76260264 76260562 -68021927 - AluJo SINE Alu -15 297 1 4842 137 68 25 chr12 76260562 76260608 -68021881 - L1MB7 LINE L1 -967 5217 5096 2121 200 71 33 chr12 76260600 76261151 -68021338 - L1MB7 LINE L1 -1715 4431 3860 * 2105 133 76 19 chr12 76261154 76261381 -68021108 - MLT1B LTR MaLR 0 390 133 2872 91 8 3 chr12 76261381 76261743 -68020746 - THE1B LTR MaLR 0 364 1 2105 133 76 19 chr12 76261743 76261884 -68020605 - MLT1B LTR MaLR -257 133 1 702 176 15 15 chr12 76261884 76262020 -68020469 - L1MB7 LINE L1 -2285 3861 3726 273 282 126 10 chr12 76262051 76262154 -68020335 - MIR SINE MIR -42 220 106 352 326 104 7 chr12 76262695 76262839 -68019650 + MIR3 SINE MIR 38 195 -13 22 70 0 0 chr12 76263102 76263145 -68019344 + AT_rich Low_complexity Low_complexity 1 43 0 496 198 32 91 chr12 76263672 76263859 -68018630 - L1MC4a LINE L1 -1976 5832 5657 320 274 145 0 chr12 76263990 76264114 -68018375 - L1MC4a LINE L1 -522 5599 5458 305 167 0 0 chr12 76264140 76264200 -68018289 + MER53 DNA DNA 9 68 -121 1027 191 204 0 chr12 76264212 76264442 -68018047 + AluJb SINE Alu 1 277 -35 279 0 0 0 chr12 76264445 76264476 -68018013 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 314 279 99 0 chr12 76264572 76264748 -68017741 - L1M2 LINE L1 -804 5376 5272 242 287 0 2 chr12 76264878 76264939 -68017550 + MER5A DNA MER1_type 31 95 -88 349 223 69 62 chr12 76265263 76265393 -68017096 - L1MC5 LINE L1 -48 7913 7783 1539 149 25 97 chr12 76265607 76265928 -68016561 - AluJo SINE Alu -14 298 1 180 0 0 0 chr12 76265975 76265995 -68016494 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2355 172 42 23 chr12 76266562 76267044 -68015445 - L1M4 LINE L1 -386 5798 5308 383 228 83 28 chr12 76267070 76267215 -68015274 + MLT1K LTR MaLR 366 518 -70 2312 114 0 0 chr12 76267783 76268081 -68014408 - AluSx SINE Alu -14 298 1 2037 134 3 0 chr12 76269280 76269563 -68012926 + AluSx SINE Alu 1 284 -28 2093 120 3 7 chr12 76269625 76269925 -68012564 - AluSx SINE Alu -13 299 1 416 277 126 0 chr12 76269996 76270115 -68012374 + MIR SINE MIR 43 176 -86 992 167 0 0 chr12 76270127 76270277 -68012212 - AluSg/x SINE Alu -26 284 135 302 261 0 0 chr12 76270278 76270347 -68012142 + MIR SINE MIR 173 241 -21 213 304 45 27 chr12 76270700 76270812 -68011677 + MIR SINE MIR 105 218 -44 1591 78 5 18 chr12 76270827 76271044 -68011445 + AluY SINE Alu 95 308 -3 1079 281 105 2 chr12 76271372 76271771 -68010718 - L1MC4a LINE L1 -1868 5940 5501 257 209 112 86 chr12 76271894 76271979 -68010510 - L1MC4a LINE L1 -798 5348 5267 2029 133 23 41 chr12 76271979 76272324 -68010165 + MER44D DNA MER2_type 1 609 0 257 209 112 86 chr12 76272324 76272425 -68010064 - L1MC4a LINE L1 -879 5267 5157 237 310 110 10 chr12 76272609 76272709 -68009780 - L2 LINE L2 -221 3051 2942 628 229 149 10 chr12 76273137 76273338 -68009151 + MIR SINE MIR 34 262 0 779 215 145 19 chr12 76273445 76273659 -68008830 + MIR SINE MIR 22 262 0 290 267 56 0 chr12 76273699 76273789 -68008700 - L1ME LINE L1 -508 5613 5519 972 212 0 10 chr12 76273832 76274078 -68008411 + AluJo SINE Alu 6 297 -15 304 281 43 27 chr12 76274081 76274266 -68008223 - L1ME LINE L1 -2339 5469 5282 2579 264 75 26 chr12 76275106 76275818 -68006671 + L2 LINE L2 1600 2375 -939 1401 216 14 27 chr12 76275818 76276115 -68006374 - AluJo SINE Alu -19 293 1 2579 264 75 26 chr12 76276115 76276383 -68006106 + L2 LINE L2 2375 2628 -686 11547 141 73 56 chr12 76276389 76277318 -68005171 + L1MA3 LINE L1 711 1623 -6101 8004 96 10 22 chr12 76277318 76278402 -68004087 + MER11C LTR ERVK 1 1071 0 11547 141 73 56 chr12 76278402 76279352 -68003137 + L1MA3 LINE L1 1623 2556 -5168 1702 140 0 90 chr12 76279352 76279673 -68002816 + AluJb SINE Alu 1 292 -20 11547 141 73 56 chr12 76279673 76281533 -68000956 + L1MA3 LINE L1 2556 4383 -3341 754 153 0 8 chr12 76281533 76281657 -68000832 + FLAM_C SINE Alu 1 123 -10 11547 141 73 56 chr12 76281657 76282705 -67999784 + L1MA3 LINE L1 4383 5412 -2312 2117 117 3 0 chr12 76282705 76283009 -67999480 - AluSx SINE Alu 0 305 1 11547 141 73 56 chr12 76283009 76283179 -67999310 + L1MA3 LINE L1 5412 5578 -2146 8964 55 25 128 chr12 76283179 76284690 -67997799 + SVA Other Other 31 1386 0 11547 141 73 56 chr12 76284690 76286255 -67996234 + L1MA3 LINE L1 5578 7389 -335 2196 120 0 10 chr12 76286255 76286555 -67995934 + AluSx SINE Alu 1 297 -15 11547 141 73 56 chr12 76286555 76286895 -67995594 + L1MA3 LINE L1 7389 7722 -2 1308 222 103 60 chr12 76286897 76287489 -67995000 + L2 LINE L2 2698 3313 0 229 324 46 0 chr12 76287528 76287636 -67994853 + MER117 DNA MER1_type 1 113 -84 290 273 82 0 chr12 76289656 76289766 -67992723 + HAL1 LINE L1 1580 1698 -809 668 200 0 0 chr12 76290023 76290133 -67992356 - FLAM_A SINE Alu -19 123 14 1246 184 149 20 chr12 76290134 76290492 -67991997 + MLT1C LTR MaLR 24 436 -31 1824 169 7 0 chr12 76291427 76291722 -67990767 + AluJo SINE Alu 1 297 -15 271 307 85 71 chr12 76291760 76292053 -67990436 + L3 LINE CR1 1135 1515 -62 310 309 163 16 chr12 76292073 76292196 -67990293 + MER5B DNA MER1_type 1 141 -37 180 154 103 0 chr12 76292219 76292258 -67990231 - MER5B DNA MER1_type -131 47 5 428 265 91 0 chr12 76292551 76292683 -67989806 + MIR SINE MIR 45 188 -74 2251 101 3 3 chr12 76293618 76293925 -67988564 - AluSq SINE Alu -6 307 1 2231 94 3 7 chr12 76294174 76294471 -67988018 + AluSq SINE Alu 2 297 -16 807 156 8 0 chr12 76294795 76294923 -67987566 - FLAM_C SINE Alu -4 129 1 2077 159 23 23 chr12 76294923 76295363 -67987126 - L1MB8 LINE L1 -68 6110 5671 407 235 12 12 chr12 76295389 76295474 -67987015 - L2 LINE L2 0 3313 3229 2761 23 0 3 chr12 76295801 76296111 -67986378 + AluY SINE Alu 1 309 -2 21 0 0 0 chr12 76296313 76296334 -67986155 + AT_rich Low_complexity Low_complexity 1 21 0 2005 108 0 0 chr12 76296822 76297080 -67985409 + AluSx SINE Alu 47 304 -8 244 241 54 18 chr12 76297130 76297242 -67985247 - MER113 DNA MER1_type? -405 116 1 2219 72 3 62 chr12 76297503 76297823 -67984666 + AluSp SINE Alu 1 301 -12 261 0 0 0 chr12 76297823 76297852 -67984637 + (CA)n Simple_repeat Simple_repeat 2 30 0 2236 92 0 10 chr12 76297883 76298178 -67984311 - AluSx SINE Alu -20 292 1 315 25 0 0 chr12 76298295 76298335 -67984154 + AluY SINE Alu 1 40 -263 655 88 0 0 chr12 76298335 76298426 -67984063 + AluSp/q SINE Alu 208 298 -15 234 239 0 0 chr12 76298521 76298567 -67983922 - L2 LINE L2 -17 3255 3210 2076 249 116 42 chr12 76299455 76300287 -67982202 + HAL1 LINE L1 1234 2164 -343 2612 48 0 3 chr12 76300287 76300599 -67981890 + AluY SINE Alu 1 311 0 2076 249 116 42 chr12 76300599 76300836 -67981653 + HAL1 LINE L1 2164 2382 -125 225 0 0 0 chr12 76301536 76301561 -67980928 + (A)n Simple_repeat Simple_repeat 1 25 0 2142 74 25 3 chr12 76301561 76301845 -67980644 + AluSc SINE Alu 1 290 -19 358 263 0 0 chr12 76301893 76301973 -67980516 - L2 LINE L2 0 3313 3234 2096 184 137 17 chr12 76302189 76302731 -67979758 + L1MC4 LINE L1 6475 7081 -961 1837 160 7 0 chr12 76302735 76303035 -67979454 + AluJb SINE Alu 1 302 -10 2016 189 72 31 chr12 76303081 76303636 -67978853 + L1MC4 LINE L1 7325 7902 -140 1827 258 90 65 chr12 76303786 76304751 -67977738 - L2 LINE L2 -1173 2141 1153 2526 38 7 0 chr12 76305306 76305599 -67976890 + AluY SINE Alu 1 295 -16 2139 110 20 3 chr12 76306203 76306502 -67975987 - AluSx SINE Alu -8 304 1 22 56 0 0 chr12 76306895 76306931 -67975558 + AT_rich Low_complexity Low_complexity 1 36 0 430 296 61 0 chr12 76307162 76307358 -67975131 + L1ME4a LINE L1 5617 5824 -297 321 146 146 32 chr12 76307586 76307709 -67974780 + L1ME4a LINE L1 5974 6110 -11 22 35 0 0 chr12 76307764 76307793 -67974696 + AT_rich Low_complexity Low_complexity 1 29 0 392 326 73 14 chr12 76307943 76308024 -67974465 + L1MC5 LINE L1 7707 7782 -179 1661 135 69 40 chr12 76308024 76308285 -67974204 + AluJo SINE Alu 1 274 -38 216 67 0 0 chr12 76308285 76308315 -67974174 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1661 135 69 40 chr12 76308315 76308356 -67974133 + AluJo SINE Alu 274 312 0 392 326 73 14 chr12 76308356 76308492 -67973997 + L1MC5 LINE L1 7782 7937 -24 2031 153 7 3 chr12 76309792 76310100 -67972389 + AluSx SINE Alu 1 309 -3 23 54 0 0 chr12 76311098 76311135 -67971354 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr12 76311251 76311272 -67971217 + AT_rich Low_complexity Low_complexity 1 21 0 2415 85 3 0 chr12 76311324 76311619 -67970870 - AluSc SINE Alu -13 296 1 386 258 93 36 chr12 76311699 76311893 -67970596 + MARNA DNA Mariner 44 248 -338 2453 91 10 0 chr12 76312017 76312326 -67970163 + AluSx SINE Alu 1 312 0 2085 117 0 0 chr12 76312332 76312644 -67969845 + AluSx SINE Alu 1 312 0 1566 167 43 20 chr12 76312703 76313008 -67969481 + AluJb SINE Alu 1 312 0 419 215 0 11 chr12 76313628 76313721 -67968768 + MARNA DNA Mariner 311 402 -184 1740 157 3 65 chr12 76313755 76314080 -67968409 - AluJo SINE Alu -7 305 1 2256 137 70 12 chr12 76314083 76314484 -67968005 - MSTA LTR MaLR -4 424 1 1314 194 105 0 chr12 76314484 76314731 -67967758 - AluJo SINE Alu -34 278 6 1374 295 82 50 chr12 76314731 76315697 -67966792 + HAL1 LINE L1 4 1000 -1507 372 317 108 6 chr12 76315725 76315892 -67966597 + MARNA DNA Mariner 384 567 -19 2012 152 7 0 chr12 76316898 76317208 -67965281 - AluJo SINE Alu 0 312 1 306 315 18 27 chr12 76318892 76319003 -67963486 - L2 LINE L2 -4 3309 3200 2415 73 0 3 chr12 76319298 76319601 -67962888 + AluY SINE Alu 1 302 -9 184 239 0 43 chr12 76320128 76320174 -67962315 - MIR SINE MIR -176 86 43 181 152 0 22 chr12 76320310 76320356 -67962133 + T-rich Low_complexity Low_complexity 2 46 0 894 197 0 13 chr12 76320362 76320514 -67961975 - FAM SINE Alu -34 151 2 211 111 0 93 chr12 76320983 76321037 -67961452 + (TTTTTA)n Simple_repeat Simple_repeat 6 54 0 21 57 0 0 chr12 76322442 76322477 -67960012 + AT_rich Low_complexity Low_complexity 1 35 0 2134 103 17 13 chr12 76322506 76322807 -67959682 - AluSx SINE Alu 0 312 11 1861 141 3 10 chr12 76322985 76323282 -67959207 + AluJb SINE Alu 5 299 -13 1895 134 22 4 chr12 76323431 76323707 -67958782 - AluJo SINE Alu -31 281 1 262 331 131 65 chr12 76323710 76323985 -67958504 - L2 LINE L2 -12 3260 2968 473 261 142 71 chr12 76323991 76324385 -67958104 + MLT1J1 LTR MaLR 1 422 -24 3825 151 47 4 chr12 76324411 76325128 -67957361 + L1MC3 LINE L1 7038 7785 0 1001 186 76 19 chr12 76325136 76325346 -67957143 + AluJo SINE Alu 88 309 -3 21 0 0 0 chr12 76325558 76325579 -67956910 + AT_rich Low_complexity Low_complexity 1 21 0 1589 155 21 3 chr12 76325897 76326187 -67956302 + LTR22 LTR ERVK 1 295 -285 735 169 169 115 chr12 76326187 76326614 -67955875 - LTR7 LTR ERV1 0 450 1 * 1408 140 19 109 chr12 76326614 76326929 -67955560 + LTR22 LTR ERVK 291 576 -4 3640 132 49 58 chr12 76327146 76327875 -67954614 + HERVK22 LTR ERVK 37 759 -6078 904 177 13 0 chr12 76328117 76328275 -67954214 + HERVK22 LTR ERVK 2330 2489 -4348 563 111 0 0 chr12 76328660 76328741 -67953748 + HERVK22 LTR ERVK 3474 3554 -3283 * 3513 136 18 6 chr12 76328736 76329388 -67953101 + HERVK22 LTR ERVK 2027 2652 -2610 3075 154 32 39 chr12 76329408 76330094 -67952395 + HERVK22 LTR ERVK 2626 3306 -1956 414 129 43 0 chr12 76330095 76330165 -67952324 + LTR22 LTR ERVK 508 580 0 371 209 47 161 chr12 76330877 76331088 -67951401 - L1ME3 LINE L1 -2 6160 5974 1313 40 0 0 chr12 76331088 76331239 -67951250 - AluY SINE Alu -10 301 151 1452 238 83 8 chr12 76331240 76331757 -67950732 - L1ME3 LINE L1 -179 5983 5428 3516 183 31 50 chr12 76331768 76331827 -67950662 - L1ME1 LINE L1 -8 6158 6099 2390 65 14 0 chr12 76331827 76332120 -67950369 - AluY SINE Alu -14 297 1 3516 183 31 50 chr12 76332120 76332976 -67949513 - L1ME1 LINE L1 -67 6099 5279 2436 86 0 0 chr12 76332976 76333280 -67949209 - AluSx SINE Alu -6 306 3 3516 183 31 50 chr12 76333280 76333624 -67948865 - L1ME1 LINE L1 -887 5279 4930 200 216 0 0 chr12 76333624 76333661 -67948828 + (CATA)n Simple_repeat Simple_repeat 2 38 0 233 291 27 0 chr12 76333757 76333867 -67948622 - L1MCc LINE L1 -5180 1243 1131 298 180 0 20 chr12 76334689 76334761 -67947728 - FLAM SINE Alu -8 125 66 1437 184 66 50 chr12 76335020 76335400 -67947089 - MLT1B LTR MaLR -4 386 1 290 316 93 27 chr12 76335488 76335653 -67946836 + MIR SINE MIR 2 176 -32 1868 232 25 36 chr12 76335714 76336239 -67946250 - MER74B LTR ERVL -59 563 45 2363 95 0 0 chr12 76336761 76337055 -67945434 + AluSg SINE Alu 1 294 -16 202 343 40 10 chr12 76337516 76337615 -67944874 + MIR SINE MIR 76 177 -85 11570 172 39 8 chr12 76337729 76339625 -67942864 + L1PA15 LINE L1 2837 4673 -1492 2028 182 0 0 chr12 76339625 76339933 -67942556 + AluJb SINE Alu 1 308 -4 11570 172 39 8 chr12 76339933 76339983 -67942506 + L1PA15 LINE L1 4673 4720 -1445 2361 102 0 0 chr12 76339983 76340276 -67942213 + AluSp SINE Alu 1 293 -20 11570 172 39 8 chr12 76340276 76340874 -67941615 + L1PA15 LINE L1 4720 5298 -867 2198 96 0 7 chr12 76340874 76341156 -67941333 + AluSc SINE Alu 1 280 -29 11570 172 39 8 chr12 76341156 76341461 -67941028 + L1PA15 LINE L1 5298 5592 -573 2574 103 11 0 chr12 76341461 76341819 -67940670 + THE1B LTR MaLR 1 362 -2 10790 96 29 24 chr12 76341821 76343393 -67939096 + THE1B-int LTR MaLR 1 1580 0 2788 80 6 3 chr12 76343393 76343755 -67938734 + THE1B LTR MaLR 1 363 -1 11570 172 39 8 chr12 76343755 76344248 -67938241 + L1PA15 LINE L1 5591 6155 -10 250 135 27 40 chr12 76344248 76344322 -67938167 + (TA)n Simple_repeat Simple_repeat 2 74 0 2105 195 30 46 chr12 76344353 76345054 -67937435 + L1MD2 LINE L1 4753 5448 -743 1984 124 50 18 chr12 76345086 76345425 -67937064 - MLT1A1 LTR MaLR -12 353 4 976 210 26 4 chr12 76345493 76345722 -67936767 + L1MD2 LINE L1 5601 5834 -525 * 7475 161 37 45 chr12 76345718 76347277 -67935212 - L1M2a LINE L1 -5007 2161 616 262 167 0 0 chr12 76347277 76347319 -67935170 - L1M2a LINE L1 -7124 44 3 1899 210 60 31 chr12 76347331 76347689 -67934800 + L1MD2 LINE L1 5814 6194 -165 1771 159 18 21 chr12 76347689 76348016 -67934473 + AluJo SINE Alu 1 326 0 1899 210 60 31 chr12 76348016 76348175 -67934314 + L1MD2 LINE L1 6194 6347 -12 28 0 0 0 chr12 76348198 76348226 -67934263 + AT_rich Low_complexity Low_complexity 1 28 0 1381 196 91 11 chr12 76348604 76348879 -67933610 - AluJo SINE Alu -13 299 3 401 141 35 12 chr12 76349044 76349129 -67933360 - L1MC/D LINE L1 -2009 5799 5713 679 274 124 73 chr12 76349161 76349669 -67932820 - MLT1H LTR MaLR -15 534 1 261 0 0 0 chr12 76349784 76349813 -67932676 + (TTTAA)n Simple_repeat Simple_repeat 2 30 0 10813 25 1 0 chr12 76349813 76351847 -67930642 - L1PA3 LINE L1 -8 6147 4111 268 230 98 69 chr12 76351850 76352124 -67930365 + L1MC4a LINE L1 4378 4659 -1487 1795 236 86 10 chr12 76352156 76352644 -67929845 + MLT1F1 LTR MaLR 43 567 0 245 314 35 35 chr12 76352715 76352998 -67929491 + L1MC4a LINE L1 4735 5017 -1129 1422 261 59 22 chr12 76353218 76353807 -67928682 + L1MC4a LINE L1 5284 5894 -1914 377 197 102 68 chr12 76353803 76353950 -67928539 + L1M4 LINE L1 1220 1371 -5488 * 342 296 55 3 chr12 76354050 76354357 -67928132 + L1M4 LINE L1 2654 2976 -3983 * 5049 204 22 2 chr12 76354353 76355546 -67926943 + L1M4 LINE L1 4375 5590 -1367 1388 185 29 19 chr12 76355546 76355859 -67926630 + L1M4 LINE L1 6270 6585 -410 582 266 0 0 chr12 76355886 76356010 -67926479 + FLAM_A SINE Alu 1 124 -9 1107 223 84 25 chr12 76356212 76356616 -67925873 - Zaphod DNA AcHobo -8 4023 3596 1517 247 114 5 chr12 76356681 76357127 -67925362 - Zaphod DNA AcHobo -3533 498 4 2053 165 68 42 chr12 76357402 76357857 -67924632 + MLT1C LTR MaLR 1 467 0 2283 95 0 3 chr12 76358439 76358735 -67923754 - AluY SINE Alu -16 295 1 709 202 0 0 chr12 76358931 76359045 -67923444 - FLAM_A SINE Alu -19 114 1 2301 156 25 37 chr12 76359128 76359167 -67923322 - MSTB LTR MaLR 0 426 388 2420 89 0 10 chr12 76359167 76359481 -67923008 + AluY SINE Alu 1 311 0 2301 156 25 37 chr12 76359481 76359872 -67922617 - MSTB LTR MaLR -38 388 1 5750 172 43 10 chr12 76359872 76360993 -67921496 - MSTB-int LTR MaLR 0 1651 494 884 117 0 0 chr12 76360981 76361126 -67921363 - MSTB-int LTR MaLR -1506 145 1 * 2089 172 61 22 chr12 76361126 76361533 -67920956 - MSTB LTR MaLR 0 426 4 2163 115 0 0 chr12 76361533 76361843 -67920646 + AluSc SINE Alu 1 310 0 5831 223 56 54 chr12 76361856 76363991 -67918498 - L1MB2 LINE L1 -42 5953 3824 1551 178 29 35 chr12 76363991 76364023 -67918466 - AluJb SINE Alu 0 312 281 189 0 0 0 chr12 76364023 76364044 -67918445 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1551 178 29 35 chr12 76364044 76364325 -67918164 - AluJb SINE Alu -31 281 1 5831 223 56 54 chr12 76364325 76365040 -67917449 - L1MB2 LINE L1 -2171 3824 3112 928 137 0 0 chr12 76365040 76365171 -67917318 - FLAM_C SINE Alu -1 132 2 5831 223 56 54 chr12 76365171 76366609 -67915880 - L1MB2 LINE L1 -2883 3112 1659 727 199 8 0 chr12 76366705 76366836 -67915653 + FLAM_A SINE Alu 2 133 0 1392 237 100 30 chr12 76366931 76367832 -67914657 - L1MB2 LINE L1 -4519 1382 388 435 320 60 49 chr12 76367990 76368337 -67914152 - L1MB2 LINE L1 -5532 359 9 1780 178 3 10 chr12 76368374 76368672 -67913817 + AluJb SINE Alu 5 300 -12 1927 309 116 44 chr12 76368672 76369096 -67913393 + L2 LINE L2 1802 2194 -1119 2368 68 3 3 chr12 76369096 76369389 -67913100 - AluY SINE Alu -18 293 1 1927 309 116 44 chr12 76369389 76370074 -67912415 + L2 LINE L2 2194 3060 -253 2290 103 3 7 chr12 76370074 76370376 -67912113 + AluSq SINE Alu 1 301 -12 1927 309 116 44 chr12 76370376 76370646 -67911843 + L2 LINE L2 3060 3309 -4 795 158 8 0 chr12 76370901 76371021 -67911468 + FLAM_A SINE Alu 1 121 -12 262 182 91 18 chr12 76371085 76371140 -67911349 + L2 LINE L2 3214 3272 0 21 0 0 0 chr12 76372099 76372120 -67910369 + AT_rich Low_complexity Low_complexity 1 21 0 589 247 124 26 chr12 76372419 76372491 -67909998 - L1ME3A LINE L1 -229 5935 5871 1872 98 0 0 chr12 76372491 76372737 -67909752 - AluSg1 SINE Alu -6 303 58 589 247 124 26 chr12 76372737 76373220 -67909269 - L1ME3A LINE L1 -293 5871 5313 592 238 107 18 chr12 76374890 76375218 -67907271 - L1ME3A LINE L1 -817 5329 4973 256 265 44 15 chr12 76375383 76375519 -67906970 - L1ME3A LINE L1 -1481 4665 4526 449 57 113 6 chr12 76376174 76376333 -67906156 + (TA)n Simple_repeat Simple_repeat 1 176 0 2234 101 3 3 chr12 76377073 76377369 -67905120 + AluSq SINE Alu 2 297 -16 807 156 8 0 chr12 76377693 76377821 -67904668 - FLAM_C SINE Alu -4 129 1 1498 225 25 25 chr12 76377821 76378261 -67904228 - L1MB8 LINE L1 -68 6110 5671 748 301 0 0 chr12 76378621 76378767 -67903722 + C-rich Low_complexity Low_complexity 1 146 0 1618 150 70 4 chr12 76379185 76379458 -67903031 + AluJb SINE Alu 1 291 -21 343 263 122 24 chr12 76379990 76380203 -67902286 + L1ME LINE L1 5585 5818 -303 256 247 0 68 chr12 76380295 76380368 -67902121 - MER5A DNA MER1_type -118 71 4 1639 171 20 20 chr12 76380641 76380933 -67901556 - AluJb SINE Alu -19 293 2 3170 150 95 27 chr12 76380990 76381403 -67901086 + L1MB4 LINE L1 5434 5912 -268 2493 61 0 0 chr12 76381403 76381698 -67900791 + AluY SINE Alu 1 295 -16 3170 150 95 27 chr12 76381698 76381959 -67900530 + L1MB4 LINE L1 5912 6154 -26 521 290 273 8 chr12 76382037 76382433 -67900056 - L2 LINE L2 -2 3311 2811 1279 201 32 4 chr12 76382434 76382683 -67899806 + AluJb SINE Alu 1 256 -56 190 247 37 37 chr12 76382695 76382776 -67899713 - L2 LINE L2 -483 2831 2751 776 183 35 7 chr12 76382779 76382921 -67899568 + FRAM SINE Alu 1 146 -30 331 250 192 68 chr12 76383074 76383366 -67899123 - L2 LINE L2 -920 2394 2067 2036 48 104 11 chr12 76383848 76384118 -67898371 - AluY SINE Alu -16 295 1 1512 166 108 7 chr12 76384747 76385025 -67897464 + AluJb SINE Alu 1 306 -6 1842 152 7 3 chr12 76385106 76385235 -67897254 + AluSx SINE Alu 3 130 -182 245 50 0 25 chr12 76385235 76385275 -67897214 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1842 152 7 3 chr12 76385275 76385435 -67897054 + AluSx SINE Alu 130 293 -19 304 305 150 29 chr12 76385832 76386157 -67896332 + L2 LINE L2 2654 3018 -254 264 59 0 0 chr12 76388663 76388697 -67893792 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chr12 76392499 76392528 -67889961 + AT_rich Low_complexity Low_complexity 1 29 0 2264 98 3 13 chr12 76395664 76395969 -67886520 + AluSp SINE Alu 3 304 -9 25 0 0 0 chr12 76398459 76398484 -67884005 + AT_rich Low_complexity Low_complexity 1 25 0 1368 175 18 40 chr12 76399984 76400258 -67882231 - AluJb SINE Alu -19 293 26 456 326 153 33 chr12 76400573 76400655 -67881834 - L2 LINE L2 0 3313 3242 749 192 8 0 chr12 76400655 76400785 -67881704 + AluJo SINE Alu 1 131 -171 456 326 153 33 chr12 76400785 76401262 -67881227 - L2 LINE L2 -71 3242 2681 998 185 0 0 chr12 76404974 76405131 -67877358 + AluJo SINE Alu 136 292 -20 1855 151 54 26 chr12 76405194 76405618 -67876871 - L1MB8 LINE L1 -30 6148 5713 * 3599 185 42 14 chr12 76405613 76405731 -67876758 + L1MB7 LINE L1 5383 5496 -688 2141 94 14 4 chr12 76405731 76406032 -67876457 + AluSg SINE Alu 1 304 0 3599 185 42 14 chr12 76406032 76406678 -67875811 + L1MB7 LINE L1 5496 6169 -15 963 257 234 9 chr12 76406897 76407544 -67874945 - L2 LINE L2 -4 3309 2523 337 264 124 27 chr12 76407554 76407812 -67874677 + L1ME LINE L1 5543 5825 -296 198 0 0 0 chr12 76407867 76407889 -67874600 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 412 243 111 35 chr12 76408938 76409082 -67873407 - MIR SINE MIR -55 207 53 1179 179 28 60 chr12 76409210 76409461 -67873028 + AluJo SINE Alu 26 268 -44 24 0 0 0 chr12 76409654 76409678 -67872811 + AT_rich Low_complexity Low_complexity 1 24 0 2415 88 3 0 chr12 76410623 76410928 -67871561 + AluSx SINE Alu 2 307 -5 755 138 81 0 chr12 76410963 76411086 -67871403 - FLAM_C SINE Alu 0 133 1 25 0 0 0 chr12 76411126 76411151 -67871338 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 76412245 76412276 -67870213 + AT_rich Low_complexity Low_complexity 1 31 0 2296 55 0 77 chr12 76412276 76412603 -67869886 - AluY SINE Alu -9 302 1 354 133 67 117 chr12 76414378 76414498 -67867991 - MER106A DNA MER1_type -4 232 119 806 153 0 22 chr12 76414603 76414740 -67867749 + AluJo SINE Alu 1 134 -178 1962 154 0 3 chr12 76415472 76415764 -67866725 - AluSx SINE Alu -21 291 1 980 129 99 0 chr12 76416029 76416200 -67866289 - MER44D DNA MER2_type -1 608 421 1197 108 149 14 chr12 76416228 76416442 -67866047 + Tigger3b DNA MER2_type 54 296 -935 823 135 8 23 chr12 76416453 76416586 -67865903 - FLAM_C SINE Alu -7 136 6 1978 99 108 78 chr12 76416593 76416872 -67865617 + Tigger3b DNA MER2_type 280 549 -2479 598 189 31 39 chr12 76416872 76416999 -67865490 + FLAM_C SINE Alu 1 126 -7 1978 99 108 78 chr12 76416999 76417044 -67865445 + Tigger3b DNA MER2_type 549 591 -2437 2116 124 10 0 chr12 76417044 76417343 -67865146 + AluSx SINE Alu 1 302 -10 1978 99 108 78 chr12 76417343 76417451 -67865038 + Tigger3b DNA MER2_type 591 726 -505 1242 191 71 16 chr12 76417453 76417705 -67864784 + AluJb SINE Alu 1 266 -46 2711 130 71 18 chr12 76417719 76418210 -67864279 + Tigger3b DNA MER2_type 716 1232 0 600 194 86 0 chr12 76418210 76418349 -67864140 - MER44D DNA MER2_type -188 421 1 204 244 0 0 chr12 76418424 76418469 -67864020 + L2 LINE L2 3228 3272 0 1875 117 59 0 chr12 76418470 76418743 -67863746 - AluSx SINE Alu -20 292 4 346 305 128 70 chr12 76421208 76421840 -67860649 - L1M2 LINE L1 -5828 1021 353 189 0 0 0 chr12 76421941 76421962 -67860527 + (CCG)n Simple_repeat Simple_repeat 2 22 0 409 265 22 37 chr12 76422707 76422843 -67859646 - MIR3 SINE MIR -7 201 68 1820 131 65 3 chr12 76423008 76423314 -67859175 + MER46B DNA MER2_type 2 201 -35 353 253 45 94 chr12 76423338 76423540 -67858949 + MIR SINE MIR 7 198 -64 782 204 102 25 chr12 76423670 76423866 -67858623 + MLT1D LTR MaLR 2 212 -293 1973 135 3 14 chr12 76423926 76424222 -67858267 + AluJb SINE Alu 7 299 -13 793 254 40 13 chr12 76424234 76424537 -67857952 - L1MEc LINE L1 -4851 1459 1149 2241 109 3 0 chr12 76424537 76424830 -67857659 + AluSq SINE Alu 1 294 -19 394 114 32 38 chr12 76424830 76424988 -67857501 + (TA)n Simple_repeat Simple_repeat 1 157 0 22 0 0 0 chr12 76424996 76425018 -67857471 + AT_rich Low_complexity Low_complexity 1 22 0 419 109 27 55 chr12 76425031 76425214 -67857275 + (TA)n Simple_repeat Simple_repeat 2 179 0 366 136 34 34 chr12 76425229 76425405 -67857084 + (TA)n Simple_repeat Simple_repeat 2 177 0 465 258 53 73 chr12 76425442 76425837 -67856652 - L1MEc LINE L1 -4999 1120 734 986 195 0 0 chr12 76426516 76426680 -67855809 + FRAM SINE Alu 1 164 -2 22 0 0 30 chr12 76426680 76426699 -67855790 + AT_rich Low_complexity Low_complexity 1 20 -12 2305 107 0 0 chr12 76426699 76426999 -67855490 + AluSg SINE Alu 1 300 -10 22 0 0 30 chr12 76426999 76427012 -67855477 + AT_rich Low_complexity Low_complexity 20 32 0 6505 106 30 15 chr12 76427232 76428323 -67854166 - L1MA1 LINE L1 0 6302 5202 1991 128 138 23 chr12 76428323 76428707 -67853782 - MSTA LTR MaLR 0 428 1 6649 124 44 12 chr12 76428707 76429743 -67852746 - MSTA-int LTR MaLR 0 1580 512 2208 159 25 29 chr12 76429917 76430357 -67852132 + L1MB8 LINE L1 5671 6095 -85 2336 95 0 7 chr12 76430357 76430662 -67851827 + AluSx SINE Alu 1 303 -9 2208 159 25 29 chr12 76430662 76430715 -67851774 + L1MB8 LINE L1 6095 6147 -33 331 195 88 0 chr12 76430672 76430785 -67851704 + L1ME4a LINE L1 5830 5952 -169 * 295 202 91 10 chr12 76430800 76430899 -67851590 + L1ME4a LINE L1 6014 6120 -1 234 325 81 31 chr12 76631155 76631315 -67651174 - L2 LINE L2 -548 2766 2599 224 162 0 0 chr12 76631323 76631360 -67651129 + L2 LINE L2 2226 2262 -1052 644 166 18 175 chr12 76631380 76631603 -67650886 + MER5A DNA MER1_type 1 188 -1 492 256 50 28 chr12 76631613 76631793 -67650696 - MER5A DNA MER1_type -1 188 5 212 0 0 35 chr12 76632107 76632136 -67650353 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1899 140 7 0 chr12 76632139 76632418 -67650071 - AluSx SINE Alu -31 281 1 382 288 150 33 chr12 76632563 76632716 -67649773 - MER5B DNA MER1_type -7 171 1 279 330 53 14 chr12 76632875 76633084 -67649405 - L2 LINE L2 -924 2390 2174 346 313 71 50 chr12 76633102 76633284 -67649205 + MER5A DNA MER1_type 3 188 -1 292 381 71 21 chr12 76633591 76633830 -67648659 + MIR SINE MIR 12 262 0 426 165 0 51 chr12 76634129 76634208 -67648281 + FRAM/FAM SINE Alu 1 75 -100 210 136 0 0 chr12 76634213 76634257 -67648232 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 2548 58 0 0 chr12 76634415 76634725 -67647764 + AluY SINE Alu 1 310 -1 266 375 82 5 chr12 76635642 76635826 -67646663 + L3 LINE CR1 80 277 -1300 255 250 0 17 chr12 76636086 76636146 -67646343 + MIR SINE MIR 106 164 -98 260 281 24 37 chr12 76636333 76636415 -67646074 - MIR SINE MIR -57 151 71 21 36 0 0 chr12 76636750 76636778 -67645711 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 76637599 76637628 -67644861 + AT_rich Low_complexity Low_complexity 1 29 0 1004 269 138 42 chr12 76638019 76638219 -67644270 + L2 LINE L2 2468 2648 -665 5923 80 45 1 chr12 76638219 76639121 -67643368 + L1PA13 LINE L1 5220 6159 -4 1004 269 138 42 chr12 76639121 76639646 -67642843 + L2 LINE L2 2648 3279 -34 1715 134 10 86 chr12 76639646 76639959 -67642530 + AluJb SINE Alu 1 289 -23 1004 269 138 42 chr12 76639959 76639979 -67642510 + L2 LINE L2 3279 3296 -17 1173 212 17 4 chr12 76640066 76640373 -67642116 + L1MB4 LINE L1 5510 5839 -335 777 267 36 0 chr12 76640592 76640839 -67641650 + L1MB4 LINE L1 5861 6116 -64 2647 84 0 0 chr12 76640841 76641198 -67641291 + L1PA6 LINE L1 5797 6153 -1 349 160 13 0 chr12 76641238 76641313 -67641176 + L1MB4 LINE L1 6104 6179 -1 313 212 80 53 chr12 76641965 76642078 -67640411 - MLT1J LTR MaLR -391 120 5 286 213 186 27 chr12 76642820 76643003 -67639486 + MER112 DNA MER1_type 2 213 -47 268 314 72 33 chr12 76643144 76643297 -67639192 - MIR3 SINE MIR -9 199 41 690 179 65 0 chr12 76643713 76643836 -67638653 + FLAM_A SINE Alu 1 131 -2 189 107 0 0 chr12 76645733 76645761 -67636728 + (T)n Simple_repeat Simple_repeat 1 28 0 28 107 0 0 chr12 76646086 76646198 -67636291 + AT_rich Low_complexity Low_complexity 1 112 0 24 0 0 0 chr12 76646250 76646274 -67636215 + AT_rich Low_complexity Low_complexity 1 24 0 527 287 15 7 chr12 76646324 76646460 -67636029 + L2 LINE L2 3134 3270 -2 231 360 116 0 chr12 76647136 76647300 -67635189 - L2 LINE L2 -221 3051 2869 887 133 28 0 chr12 76647623 76647766 -67634723 - MSTD LTR MaLR 0 396 250 257 195 0 0 chr12 76647808 76647849 -67634640 - MSTC LTR MaLR -138 258 218 576 108 10 39 chr12 76648030 76648132 -67634357 - MSTC LTR MaLR -329 99 1 366 268 250 0 chr12 76648147 76648311 -67634178 + MER20B DNA MER1_type 7 211 -572 1831 150 3 20 chr12 76648514 76648807 -67633682 + AluJb SINE Alu 1 288 -24 1971 129 67 17 chr12 76649527 76649883 -67632606 - THE1C LTR MaLR -1 374 1 2092 147 0 0 chr12 76650014 76650313 -67632176 + AluSx SINE Alu 1 299 -13 985 211 3 67 chr12 76650315 76650600 -67631889 + MER20B DNA MER1_type 515 781 -2 190 365 0 0 chr12 76650601 76650653 -67631836 - L2 LINE L2 -58 3214 3163 2127 108 0 17 chr12 76651926 76652222 -67630267 + AluSx SINE Alu 1 291 -21 24 0 0 0 chr12 76652433 76652457 -67630032 + AT_rich Low_complexity Low_complexity 1 24 0 275 251 157 52 chr12 76652935 76653126 -67629363 - MIR SINE MIR -19 243 33 598 174 0 80 chr12 76653252 76653390 -67629099 + FLAM_A SINE Alu 1 127 -6 2089 100 3 28 chr12 76653396 76653727 -67628762 + AluSx SINE Alu 1 324 0 890 217 16 0 chr12 76653743 76653927 -67628562 + MER5A DNA MER1_type 3 189 0 463 249 280 11 chr12 76654024 76654213 -67628276 - MIR SINE MIR -8 254 15 1011 271 100 32 chr12 76654783 76655393 -67627096 + L2 LINE L2 2621 3272 -41 1321 174 3 75 chr12 76657549 76657843 -67624646 + AluJo SINE Alu 39 311 -1 269 103 0 0 chr12 76658429 76658468 -67624021 - MADE1 DNA Mariner -37 43 5 310 212 118 12 chr12 76658490 76658575 -67623914 + MER5B DNA MER1_type 7 100 -78 1761 159 0 51 chr12 76658575 76658889 -67623600 + AluJb SINE Alu 1 298 -14 24 0 0 0 chr12 76659227 76659251 -67623238 + AT_rich Low_complexity Low_complexity 1 24 0 305 241 99 68 chr12 76659284 76659446 -67623043 - MER20B DNA MER1_type -616 167 1 241 192 19 0 chr12 76659534 76659586 -67622903 + (TGAA)n Simple_repeat Simple_repeat 2 54 0 407 245 31 0 chr12 76659874 76659972 -67622517 - MER94 DNA DNA -33 101 1 270 0 0 0 chr12 76661807 76661837 -67620652 + (TG)n Simple_repeat Simple_repeat 2 31 0 1606 186 11 3 chr12 76662352 76662637 -67619852 - AluJo SINE Alu -25 287 1 2029 129 20 10 chr12 76663051 76663353 -67619136 - AluSg SINE Alu -4 306 2 300 236 230 69 chr12 76664010 76664184 -67618305 + MIR SINE MIR 6 207 -55 23 33 0 0 chr12 76664413 76664443 -67618046 + AT_rich Low_complexity Low_complexity 1 30 0 242 292 277 0 chr12 76665576 76665706 -67616783 + MER5A DNA MER1_type 18 183 -6 2036 132 7 3 chr12 76665982 76666285 -67616204 - AluSx SINE Alu -6 306 3 476 268 9 92 chr12 76668170 76668398 -67614091 - MIR SINE MIR -48 214 6 565 332 170 42 chr12 76668715 76669373 -67613116 - L2 LINE L2 -261 3011 2272 312 322 74 13 chr12 76669420 76669569 -67612920 + L2 LINE L2 3129 3286 -27 260 191 0 0 chr12 76669631 76669673 -67612816 - 5S rRNA rRNA -79 42 1 316 341 126 27 chr12 76670111 76670445 -67612044 - L2 LINE L2 -549 2765 2399 390 162 0 0 chr12 76670766 76670840 -67611649 + T-rich Low_complexity Low_complexity 1 74 0 22 0 0 0 chr12 76671037 76671059 -67611430 + AT_rich Low_complexity Low_complexity 1 22 0 927 133 0 0 chr12 76671499 76671642 -67610847 + FLAM_C SINE Alu 1 143 0 1916 143 3 23 chr12 76671673 76671981 -67610508 + AluSx SINE Alu 1 302 -10 1964 100 0 8 chr12 76672569 76672828 -67609661 + AluSx SINE Alu 30 286 -26 223 304 154 22 chr12 76672968 76673287 -67609202 + L2 LINE L2 2402 2762 -552 997 104 0 15 chr12 76674253 76674387 -67608102 - AluSx SINE Alu -151 161 30 222 37 0 0 chr12 76674811 76674838 -67607651 + (TG)n Simple_repeat Simple_repeat 2 28 0 313 233 156 26 chr12 76676713 76676865 -67605624 - MIR SINE MIR -62 146 23 252 0 0 0 chr12 76676888 76676916 -67605573 + (CA)n Simple_repeat Simple_repeat 2 29 0 2168 107 25 14 chr12 76677317 76677671 -67604818 + L1MA9 LINE L1 5951 6308 -4 1689 134 109 0 chr12 76678223 76678499 -67603990 - AluSg SINE Alu -4 306 1 2195 121 0 10 chr12 76678524 76678830 -67603659 - AluSx SINE Alu -9 303 1 1827 60 0 8 chr12 76680097 76680332 -67602157 + L1PA8 LINE L1 5939 6171 -1 2427 83 0 7 chr12 76680349 76680651 -67601838 + AluSq SINE Alu 1 300 -13 3180 175 15 85 chr12 76681788 76681877 -67600612 - LTR8 LTR ERV1 0 691 597 2007 125 35 0 chr12 76681877 76682165 -67600324 + AluSx SINE Alu 1 298 -14 3180 175 15 85 chr12 76682165 76682816 -67599673 - LTR8 LTR ERV1 -94 597 3 4586 67 20 3 chr12 76683792 76684404 -67598085 + L1PA13 LINE L1 5542 6163 0 1060 176 11 0 chr12 76685191 76685367 -67597122 + AluJo SINE Alu 119 296 -16 426 324 164 18 chr12 76685378 76685597 -67596892 - MIR SINE MIR 0 262 12 2328 155 16 53 chr12 76688173 76688579 -67593910 - Tigger2a DNA MER2_type -2274 434 45 1940 147 3 3 chr12 76688579 76688878 -67593611 + AluSx SINE Alu 1 299 -13 2328 155 16 53 chr12 76688878 76688922 -67593567 - Tigger2a DNA MER2_type -2663 45 1 706 256 30 0 chr12 76690490 76690654 -67591835 + FRAM SINE Alu 1 162 -14 224 57 0 29 chr12 76691917 76691952 -67590537 + (TG)n Simple_repeat Simple_repeat 2 35 0 237 175 41 124 chr12 76691969 76692066 -67590423 - L1MC4 LINE L1 -1339 6703 6615 465 293 0 65 chr12 76692087 76692507 -67589982 + (TATATG)n Simple_repeat Simple_repeat 1 392 0 358 400 23 0 chr12 76692475 76692650 -67589839 + (CATG)n Simple_repeat Simple_repeat 1 179 0 * 456 298 0 56 chr12 76692555 76692733 -67589756 + (TATATG)n Simple_repeat Simple_repeat 3 170 0 301 284 11 11 chr12 76692740 76692828 -67589661 - L1MC4 LINE L1 -1340 6702 6615 265 221 0 23 chr12 76692846 76692932 -67589557 + (TA)n Simple_repeat Simple_repeat 2 85 0 323 273 11 0 chr12 76692944 76693032 -67589457 - L1MC4 LINE L1 -1340 6702 6614 186 227 0 0 chr12 76693033 76693077 -67589412 + (TATATG)n Simple_repeat Simple_repeat 1 44 0 430 323 39 0 chr12 76693247 76693402 -67589087 - MIR SINE MIR -14 248 88 289 202 40 101 chr12 76693403 76693502 -67588987 + MIR SINE MIR 112 204 -58 340 116 14 14 chr12 76693502 76693571 -67588918 + (TA)n Simple_repeat Simple_repeat 1 69 0 243 324 65 14 chr12 76693605 76693744 -67588745 + L2 LINE L2 3168 3313 0 522 134 0 0 chr12 76696033 76696115 -67586374 - MLT1E3 LTR MaLR -542 82 1 668 314 40 12 chr12 76696292 76696540 -67585949 + MIR SINE MIR 7 261 -1 321 285 201 7 chr12 76696972 76697116 -67585373 + MIR SINE MIR 70 241 -21 6388 80 12 12 chr12 76697118 76698393 -67584096 + L1PA10 LINE L1 4881 6157 -11 489 252 109 76 chr12 76700084 76700153 -67582336 + MARNA DNA Mariner 132 197 -389 2170 104 3 3 chr12 76700153 76700451 -67582038 - AluSg SINE Alu -12 298 1 489 252 109 76 chr12 76700451 76700813 -67581676 + MARNA DNA Mariner 197 577 -9 339 246 123 25 chr12 76701365 76701487 -67581002 - MER5A DNA MER1_type -2 187 54 * 354 265 103 29 chr12 76701387 76701523 -67580966 + MER5A DNA MER1_type 43 188 -1 25 0 0 0 chr12 76701587 76701612 -67580877 + AT_rich Low_complexity Low_complexity 1 25 0 2060 67 4 4 chr12 76702140 76702393 -67580096 + AluSg SINE Alu 50 302 -8 549 269 47 16 chr12 76703105 76703298 -67579191 + MIR SINE MIR 20 218 -44 406 125 0 0 chr12 76703431 76703495 -67578994 + L1P4 LINE L1 5605 5668 -506 2097 115 0 11 chr12 76703501 76703788 -67578701 + AluSx SINE Alu 5 288 -24 315 0 0 0 chr12 76703794 76703829 -67578660 + (TG)n Simple_repeat Simple_repeat 2 36 0 2410 94 3 0 chr12 76704077 76704386 -67578103 - AluSp SINE Alu -3 310 1 720 212 0 0 chr12 76704662 76704780 -67577709 + FLAM_C SINE Alu 1 118 -15 25 0 0 0 chr12 76704780 76704805 -67577684 + AT_rich Low_complexity Low_complexity 1 25 0 191 333 0 63 chr12 76704969 76705080 -67577409 + L2 LINE L2 2986 3089 -183 2059 165 123 2 chr12 76705873 76706301 -67576188 - MER44D DNA MER2_type -7 598 64 2487 100 27 20 chr12 76706301 76706855 -67575634 - MER51A LTR ERV1 0 634 1 545 226 119 72 chr12 76707087 76707322 -67575167 + MER90 LTR ERV1 8 253 -361 2218 97 3 3 chr12 76707804 76708114 -67574375 + AluSx SINE Alu 1 310 -2 602 167 51 29 chr12 76709372 76709510 -67572979 - FLAM_C SINE Alu 0 143 3 1913 88 81 0 chr12 76709650 76709922 -67572567 + AluSx SINE Alu 1 294 -18 861 213 158 31 chr12 76710499 76710598 -67571891 - Charlie8 DNA MER1_type -1928 489 404 2143 81 39 3 chr12 76710598 76710882 -67571607 - AluSq SINE Alu -19 294 1 861 213 158 31 chr12 76710882 76711199 -67571290 - Charlie8 DNA MER1_type -2013 404 27 1965 133 71 0 chr12 76711481 76711805 -67570684 + MER7A DNA MER2_type 1 345 -1 1841 131 31 14 chr12 76712516 76712806 -67569683 - AluSx SINE Alu -17 295 1 802 320 97 31 chr12 76712808 76713252 -67569237 - L2 LINE L2 -6 3307 2835 243 176 0 0 chr12 76713260 76713311 -67569178 + MER69 DNA AcHobo 87 137 -2389 457 149 0 0 chr12 76713319 76713393 -67569096 + MER69 DNA AcHobo 2452 2525 -1 212 272 49 12 chr12 76713415 76713496 -67568993 + MIR SINE MIR 179 262 0 271 274 0 0 chr12 76713694 76713767 -67568722 - MIR SINE MIR -5 257 185 362 145 4 72 chr12 76713840 76714109 -67568380 + AluJo SINE Alu 1 301 -1 280 354 27 27 chr12 76714327 76714474 -67568015 + MIR SINE MIR 56 202 -60 238 326 84 11 chr12 76715068 76715163 -67567326 + L2 LINE L2 3187 3288 -25 1983 149 0 0 chr12 76715266 76715554 -67566935 + AluSx SINE Alu 1 288 -24 315 0 0 0 chr12 76715562 76715597 -67566892 + (TG)n Simple_repeat Simple_repeat 2 36 0 3714 82 12 2 chr12 76715597 76716092 -67566397 + L1PA10 LINE L1 5664 6163 -5 2089 83 45 0 chr12 76719340 76719652 -67562837 - L1MA1 LINE L1 0 6302 5977 1949 107 13 42 chr12 76720351 76720661 -67561828 + AluSx SINE Alu 1 301 -11 437 200 48 19 chr12 76721542 76721647 -67560842 - L2 LINE L2 -12 3301 3194 409 276 0 9 chr12 76721652 76721757 -67560732 + MER5B DNA MER1_type 1 104 -74 447 150 30 30 chr12 76722777 76722910 -67559579 + GA-rich Low_complexity Low_complexity 4 136 0 2790 7 0 0 chr12 76726242 76726542 -67555947 - AluYa5 SINE Alu -11 300 1 466 270 185 19 chr12 76727756 76728015 -67554474 - L2 LINE L2 -1 3312 3011 278 319 85 27 chr12 76728811 76728999 -67553490 + L3 LINE CR1 1066 1264 -313 560 268 89 47 chr12 76729050 76729285 -67553204 + MIR SINE MIR 6 250 -12 289 261 152 0 chr12 76729336 76729428 -67553061 - MIR SINE MIR -59 149 44 3209 95 4 11 chr12 76730291 76730309 -67552180 - MER41A LTR ERV1 -106 448 431 2154 132 3 3 chr12 76730309 76730619 -67551870 + AluSx SINE Alu 1 310 -2 3209 95 4 11 chr12 76730619 76731051 -67551438 - MER41A LTR ERV1 -123 431 1 459 195 0 0 chr12 76731051 76731133 -67551356 + AluSg/x SINE Alu 219 300 -12 647 138 0 138 chr12 76731279 76731431 -67551058 - FLAM_C SINE Alu -2 131 1 1939 194 3 14 chr12 76731845 76732212 -67550277 + MLT1A1 LTR MaLR 3 365 0 530 137 0 39 chr12 76733061 76733072 -67549417 + MER4A LTR ERV1 1 11 -653 185 65 32 0 chr12 76733072 76733103 -67549386 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 530 137 0 39 chr12 76733103 76733193 -67549296 + MER4A LTR ERV1 11 98 -566 * 1983 108 17 22 chr12 76733189 76733540 -67548949 + MER4A LTR ERV1 257 664 0 513 281 15 22 chr12 76733618 76733753 -67548736 + MIR SINE MIR 24 157 -105 1785 146 23 10 chr12 76735196 76735497 -67546992 + AluJo SINE Alu 3 307 -5 21 36 0 0 chr12 76735525 76735553 -67546936 + AT_rich Low_complexity Low_complexity 1 28 0 393 360 38 0 chr12 76735613 76735798 -67546691 - MIR SINE MIR -34 228 39 751 151 0 68 chr12 76735818 76735964 -67546525 + MER5A DNA MER1_type 53 188 -1 429 151 55 0 chr12 76736334 76736407 -67546082 + MSTD LTR MaLR 1 77 -319 505 183 111 8 chr12 76736416 76736542 -67545947 + L1MA10 LINE L1 6186 6324 -10 1202 64 0 0 chr12 76736705 76736861 -67545628 - L1PA4 LINE L1 -3 6152 5997 451 171 0 0 chr12 76736925 76737007 -67545482 + L1MA7 LINE L1 6187 6268 -23 877 138 0 13 chr12 76737015 76737167 -67545322 - L1PA16 LINE L1 -11 6155 6006 1468 204 66 31 chr12 76737167 76737486 -67545003 + MSTD LTR MaLR 67 396 0 373 269 19 0 chr12 76737486 76737590 -67544899 + MIR SINE MIR 47 152 -110 1819 154 73 12 chr12 76737633 76737977 -67544512 + MLT1A1 LTR MaLR 1 365 0 1615 217 112 64 chr12 76739221 76739360 -67543129 + MLT1F LTR MaLR 1 132 -410 2219 126 32 24 chr12 76739360 76739732 -67542757 + THE1C LTR MaLR 1 375 0 1615 217 112 64 chr12 76739732 76740109 -67542380 + MLT1F LTR MaLR 132 542 0 719 180 173 0 chr12 76740438 76740588 -67541901 - MER5A DNA MER1_type 0 189 14 1245 145 10 0 chr12 76740847 76741040 -67541449 - AluSx SINE Alu -6 306 112 752 115 0 10 chr12 76741099 76741203 -67541286 - AluSx SINE Alu -207 106 4 321 296 30 15 chr12 76741298 76741433 -67541056 - MIR SINE MIR -48 214 78 831 181 42 0 chr12 76741739 76741883 -67540606 - FAM SINE Alu -19 166 17 724 277 69 31 chr12 76741959 76742219 -67540270 - MLT1K LTR MaLR -89 499 230 623 221 160 9 chr12 76742246 76742459 -67540030 + MIR SINE MIR 18 262 0 816 267 110 11 chr12 76742667 76742948 -67539541 + MLT1J LTR MaLR 1 309 -202 489 301 40 45 chr12 76743020 76743196 -67539293 - MER91A DNA MER1_type -20 176 2 668 210 17 0 chr12 76743919 76744038 -67538451 - FLAM_C SINE Alu -19 124 4 646 124 116 16 chr12 76744123 76744244 -67538245 - FLAM_C SINE Alu 0 133 1 1683 189 26 0 chr12 76744353 76744655 -67537834 + AluJo SINE Alu 1 310 -2 340 263 98 15 chr12 76744775 76744908 -67537581 - MIR SINE MIR -71 191 48 2377 65 0 0 chr12 76745808 76746098 -67536391 - AluY SINE Alu -21 290 1 189 281 37 37 chr12 76746629 76746711 -67535778 + L2 LINE L2 2991 3072 -200 231 167 24 0 chr12 76748377 76748419 -67534070 + MER91 DNA MER1_type 77 119 -21 21 0 0 0 chr12 76749307 76749328 -67533161 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr12 76749550 76749585 -67532904 + AT_rich Low_complexity Low_complexity 1 35 0 220 242 0 16 chr12 76749929 76749991 -67532498 + A-rich Low_complexity Low_complexity 4 64 0 210 191 0 0 chr12 76750940 76750987 -67531502 + A-rich Low_complexity Low_complexity 1 47 0 205 86 29 0 chr12 76751189 76751224 -67531265 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 207 0 0 0 chr12 76751519 76751542 -67530947 + (TA)n Simple_repeat Simple_repeat 2 24 0 191 247 13 104 chr12 76752717 76752794 -67529695 - MER5A DNA MER1_type -86 103 34 * 252 321 0 25 chr12 76752735 76752816 -67529673 + MER5A DNA MER1_type 111 189 0 258 269 51 13 chr12 76753494 76753572 -67528917 + MIR SINE MIR 23 103 -105 2139 139 0 3 chr12 76755352 76755661 -67526828 - AluSx SINE Alu -4 308 1 1665 174 3 27 chr12 76755851 76756149 -67526340 + AluSx SINE Alu 1 291 -21 307 241 8 83 chr12 76756285 76756418 -67526071 - MER103 DNA DNA 0 166 44 195 333 159 15 chr12 76756612 76756744 -67525745 + MIR3 SINE MIR 19 169 -39 23 92 0 0 chr12 76757594 76757659 -67524830 + AT_rich Low_complexity Low_complexity 1 65 0 2084 108 3 20 chr12 76757828 76758134 -67524355 + AluSx SINE Alu 3 303 -9 736 233 35 0 chr12 76758357 76758529 -67523960 + MER58A DNA MER1_type 45 222 -2 197 301 194 11 chr12 76759485 76759578 -67522911 - L2 LINE L2 -5 3308 3199 2184 113 3 10 chr12 76761145 76761446 -67521043 - AluSx SINE Alu -13 299 1 206 345 0 23 chr12 76762033 76762120 -67520369 - L2 LINE L2 -2 3270 3186 2102 130 10 0 chr12 76762301 76762600 -67519889 - AluSx SINE Alu -10 302 1 23 33 0 0 chr12 76763443 76763473 -67519016 + AT_rich Low_complexity Low_complexity 1 30 0 300 236 230 69 chr12 76763702 76763876 -67518613 - MIR SINE MIR -55 207 6 2029 129 20 10 chr12 76764533 76764835 -67517654 + AluSg SINE Alu 2 306 -4 1606 186 11 3 chr12 76765249 76765534 -67516955 + AluJo SINE Alu 1 287 -25 270 0 0 0 chr12 76766049 76766079 -67516410 + (CA)n Simple_repeat Simple_repeat 2 31 0 407 245 31 0 chr12 76767915 76768013 -67514476 + MER94 DNA DNA 1 101 -33 241 192 19 0 chr12 76768301 76768353 -67514136 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 305 241 99 68 chr12 76768441 76768603 -67513886 + MER20B DNA MER1_type 1 167 -616 24 0 0 0 chr12 76768636 76768660 -67513829 + AT_rich Low_complexity Low_complexity 1 24 0 2310 74 0 36 chr12 76768998 76769307 -67513182 - AluSx SINE Alu -14 298 1 450 0 0 0 chr12 76769397 76769447 -67513042 + (CA)n Simple_repeat Simple_repeat 2 51 0 720 159 23 8 chr12 76770166 76770298 -67512191 + MER3 DNA MER1_type 2 135 -74 22 35 0 0 chr12 76771312 76771341 -67511148 + AT_rich Low_complexity Low_complexity 1 29 0 1556 108 0 14 chr12 76773598 76773812 -67508677 - AluSx SINE Alu -101 211 1 36 40 0 0 chr12 76776178 76776228 -67506261 + AT_rich Low_complexity Low_complexity 1 50 0 238 216 0 0 chr12 76777734 76777785 -67504704 + T-rich Low_complexity Low_complexity 1 51 0 367 200 214 7 chr12 76778883 76779028 -67503461 + MER104 DNA MER2_type 3 177 -3 336 138 17 0 chr12 76779775 76779833 -67502656 - Alu SINE Alu -1 300 242 2071 110 3 3 chr12 76779880 76780171 -67502318 - AluSx SINE Alu -21 291 1 1980 157 0 0 chr12 76781704 76781998 -67500491 - AluSx SINE Alu -18 294 1 23 0 0 0 chr12 76782812 76782835 -67499654 + AT_rich Low_complexity Low_complexity 1 23 0 1806 89 12 12 chr12 76783028 76783275 -67499214 + AluSq SINE Alu 51 297 -16 215 233 12 47 chr12 76784033 76784119 -67498370 + CT-rich Low_complexity Low_complexity 2 84 0 2094 104 0 4 chr12 76784391 76784698 -67497791 + AluSq SINE Alu 9 314 0 987 217 25 0 chr12 76786187 76786390 -67496099 - MER3 DNA MER1_type 0 209 2 733 189 0 0 chr12 76786476 76786598 -67495891 - FLAM_C SINE Alu -9 124 3 439 232 32 32 chr12 76786759 76786884 -67495605 + MIR SINE MIR 64 188 -74 429 357 36 10 chr12 76787057 76787253 -67495236 - MIR SINE MIR -15 247 47 2282 115 0 6 chr12 76788657 76788970 -67493519 + AluSx SINE Alu 1 311 -1 2158 94 0 0 chr12 76789756 76790031 -67492458 + AluY SINE Alu 1 275 -36 812 69 20 0 chr12 76790031 76790132 -67492357 + AluY SINE Alu 188 290 -21 968 284 72 38 chr12 76790591 76790877 -67491612 + L2 LINE L2 2657 2932 -381 733 251 56 0 chr12 76790877 76791056 -67491433 - MER5A DNA MER1_type 0 189 1 968 284 72 38 chr12 76791056 76791383 -67491106 + L2 LINE L2 2932 3312 -1 247 350 74 46 chr12 76791402 76791725 -67490764 - L2 LINE L2 -1387 1927 1596 587 285 70 66 chr12 76792737 76793583 -67488906 + L1MEd LINE L1 612 1450 -4679 1966 144 10 0 chr12 76793583 76793881 -67488608 + AluSx SINE Alu 1 301 -11 587 285 70 66 chr12 76793881 76793950 -67488539 + L1MEd LINE L1 1450 1517 -4612 1685 199 0 3 chr12 76794011 76794293 -67488196 + AluJb SINE Alu 5 285 -27 406 286 149 0 chr12 76794550 76794805 -67487684 + L1MEd LINE L1 2098 2390 -3739 368 278 94 20 chr12 76794955 76795200 -67487289 + L1MEd LINE L1 2663 2925 -3204 441 295 194 3 chr12 76795334 76795721 -67486768 + L1MEd LINE L1 3271 3731 -2398 1501 196 104 52 chr12 76795721 76796161 -67486328 + L1ME1 LINE L1 5699 6161 -5 697 260 105 20 chr12 76796226 76796634 -67485855 + L1MEd LINE L1 3795 4237 -1892 2241 109 0 0 chr12 76797557 76797859 -67484630 + AluSx SINE Alu 1 302 -10 2369 105 0 0 chr12 76798133 76798439 -67484050 - AluSx SINE Alu -6 306 1 186 343 40 40 chr12 76799059 76799158 -67483331 + L2 LINE L2 2650 2748 -566 680 172 0 9 chr12 76800689 76800805 -67481684 + FLAM_C SINE Alu 11 125 -18 55 0 0 0 chr12 76800805 76800860 -67481629 + AT_rich Low_complexity Low_complexity 1 55 0 2369 54 11 0 chr12 76800871 76801174 -67481315 + AluY SINE Alu 1 306 0 2139 123 7 0 chr12 76801328 76801629 -67480860 - AluSx SINE Alu -8 304 2 251 229 0 0 chr12 76805051 76805099 -67477390 + L2 LINE L2 3210 3257 -15 478 292 247 9 chr12 76805339 76805558 -67476931 - L2 LINE L2 -1 3271 3001 385 265 46 40 chr12 76805543 76805694 -67476795 - L2 LINE L2 -493 2821 2670 * 182 306 81 40 chr12 76805886 76806059 -67476430 - L2 LINE L2 -672 2642 2463 1964 153 0 10 chr12 76806079 76806392 -67476097 + AluJb SINE Alu 3 312 0 2228 108 7 3 chr12 76806576 76806881 -67475608 - AluSg SINE Alu -4 306 1 257 311 296 13 chr12 76806917 76807451 -67475038 + L2 LINE L2 1789 2473 -841 318 243 14 0 chr12 76807451 76807521 -67474968 + L2 LINE L2 2592 2662 -652 1666 186 82 5 chr12 76807538 76807914 -67474575 + MER63B DNA MER1_type 1 405 -31 730 289 92 0 chr12 76808192 76808431 -67474058 - MIR SINE MIR 0 262 2 421 290 8 23 chr12 76808439 76808570 -67473919 + L2 LINE L2 3169 3297 -16 490 277 54 34 chr12 76808938 76809086 -67473403 - L2 LINE L2 0 3272 3122 275 293 127 45 chr12 76809291 76809448 -67473041 + L3b LINE CR1 1245 1414 -169 2245 83 13 17 chr12 76809523 76809823 -67472666 + AluSq SINE Alu 1 299 -14 14932 115 60 49 chr12 76810289 76810507 -67471982 - Tigger2 DNA MER2_type 0 2718 2504 2299 87 10 0 chr12 76810507 76810805 -67471684 + AluSq SINE Alu 2 302 -11 14932 115 60 49 chr12 76810805 76813276 -67469213 - Tigger2 DNA MER2_type -214 2504 1 364 360 52 47 chr12 76813427 76813638 -67468851 - L2 LINE L2 -4 3268 3057 209 186 0 51 chr12 76814819 76814878 -67467611 + A-rich Low_complexity Low_complexity 3 58 0 425 221 96 0 chr12 76815150 76815254 -67467235 + L2 LINE L2 3192 3305 -8 200 323 108 11 chr12 76815286 76815379 -67467110 - L2 LINE L2 0 3272 3171 299 220 156 37 chr12 76815397 76815506 -67466983 + L2 LINE L2 3190 3311 -2 831 205 0 6 chr12 76818013 76818169 -67464320 + AluJb SINE Alu 152 306 -6 21 0 0 0 chr12 76818246 76818267 -67464222 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr12 76819004 76819047 -67463442 + AT_rich Low_complexity Low_complexity 1 43 0 1762 152 3 35 chr12 76820813 76821123 -67461366 + AluJo SINE Alu 1 300 -12 1557 96 0 27 chr12 76821209 76821428 -67461061 + AluSg SINE Alu 1 213 -97 922 179 36 36 chr12 76821563 76821786 -67460703 + THE1A LTR MaLR 133 355 0 6135 108 7 5 chr12 76821786 76822660 -67459829 + THE1A-int LTR MaLR 1 876 -704 5609 152 14 8 chr12 76822778 76824330 -67458159 - L1PB1 LINE L1 -265 5886 4323 1694 137 4 18 chr12 76825948 76826225 -67456264 - THE1A LTR MaLR -80 275 3 4064 143 42 42 chr12 76826227 76826961 -67455528 - THE1A-int LTR MaLR 0 1580 847 579 179 0 45 chr12 76828179 76828313 -67454176 + AluSq/x SINE Alu 2 129 -184 197 272 39 68 chr12 76828880 76828983 -67453506 + L2 LINE L2 3173 3272 0 281 26 0 26 chr12 76829028 76829067 -67453422 + (TG)n Simple_repeat Simple_repeat 1 38 0 997 234 48 32 chr12 76829459 76829707 -67452782 + MIR SINE MIR 11 262 0 6020 204 37 4 chr12 76829869 76831082 -67451407 - L1PA15-16 LINE L1 -5687 1162 25 733 217 18 54 chr12 76831997 76832163 -67450326 + AluJo SINE Alu 127 286 -26 331 272 104 8 chr12 76832801 76832926 -67449563 + MIR SINE MIR 126 262 0 2861 105 3 0 chr12 76832957 76833320 -67449169 + THE1B LTR MaLR 1 364 0 492 361 57 8 chr12 76834923 76835167 -67447322 - MIR SINE MIR -1 261 6 822 126 0 8 chr12 76835337 76835456 -67447033 + FLAM_C SINE Alu 1 118 -25 35 41 0 0 chr12 76835460 76835509 -67446980 + AT_rich Low_complexity Low_complexity 1 49 0 2474 77 0 3 chr12 76835937 76836249 -67446240 - AluY SINE Alu 0 311 1 1539 142 0 25 chr12 76837207 76837447 -67445042 + MER46A DNA MER2_type 2 235 -1 269 282 34 0 chr12 76837450 76837567 -67444922 + CT-rich Low_complexity Low_complexity 1 121 0 517 323 63 5 chr12 76837571 76837760 -67444729 - MIR SINE MIR -2 260 61 823 207 7 0 chr12 76837760 76837905 -67444584 + FRAM SINE Alu 1 146 -30 477 0 0 0 chr12 76837910 76837963 -67444526 + (GA)n Simple_repeat Simple_repeat 2 54 0 223 139 28 0 chr12 76837964 76838000 -67444489 - MIR SINE MIR -192 70 34 2245 108 3 0 chr12 76838873 76839168 -67443321 + AluSx SINE Alu 3 298 -14 238 296 37 46 chr12 76839651 76839759 -67442730 - L2 LINE L2 -25 3247 3141 325 23 0 0 chr12 76840023 76840066 -67442423 + L1PA6 LINE L1 6112 6154 0 497 206 0 137 chr12 76841577 76841616 -67440873 - MER5B DNA MER1_type -11 167 124 1831 133 47 20 chr12 76841616 76841916 -67440573 - AluSx SINE Alu -4 308 1 497 206 0 137 chr12 76841916 76842022 -67440467 - MER5B DNA MER1_type -54 124 42 * 589 263 23 40 chr12 76842010 76842185 -67440304 + MER5B DNA MER1_type 7 178 0 2324 78 12 38 chr12 76842200 76842520 -67439969 + AluSx SINE Alu 1 312 0 783 292 83 7 chr12 76842874 76843175 -67439314 - MER46C DNA MER2_type -8 330 7 1886 129 61 0 chr12 76843861 76844140 -67438349 + AluSg SINE Alu 1 296 -14 1528 181 15 62 chr12 76844584 76844909 -67437580 - AluJo SINE Alu -2 310 1 31 0 8 0 chr12 76844909 76844984 -67437505 + AT_rich Low_complexity Low_complexity 1 31 0 1746 181 19 10 chr12 76845018 76845327 -67437162 + AluJo SINE Alu 1 312 0 1167 119 0 0 chr12 76845353 76845512 -67436977 - AluSc SINE Alu -15 294 136 1778 194 0 3 chr12 76845598 76845902 -67436587 + AluJo SINE Alu 1 303 -9 2089 130 3 16 chr12 76846035 76846342 -67436147 + AluSx SINE Alu 1 303 -9 2285 166 101 141 chr12 76846687 76847547 -67434942 - LTR1B LTR ERV1 0 826 1 191 274 16 32 chr12 76847901 76847963 -67434526 + L2 LINE L2 2993 3053 -219 394 280 95 18 chr12 76848161 76848329 -67434160 - L1ME LINE L1 -521 5600 5420 605 193 52 22 chr12 76848420 76848555 -67433934 - MIR SINE MIR -24 238 100 1553 229 33 9 chr12 76848806 76849277 -67433212 + L1ME LINE L1 5177 5660 -502 440 289 26 7 chr12 76849305 76849457 -67433032 - MLT1H LTR MaLR -369 180 26 850 231 22 6 chr12 76850541 76850723 -67431766 + MLT1D LTR MaLR 1 185 -441 336 280 53 47 chr12 76850728 76850878 -67431611 + L1MB2 LINE L1 8 158 -5983 2041 136 3 7 chr12 76850919 76851229 -67431260 + AluSx SINE Alu 1 309 -3 12356 195 35 19 chr12 76851241 76853418 -67429071 + L1MB2 LINE L1 2441 4581 -1654 1793 174 3 3 chr12 76853418 76853716 -67428773 + AluJb SINE Alu 1 298 -14 12356 195 35 19 chr12 76853716 76854132 -67428357 + L1MB2 LINE L1 4581 4989 -1246 1752 166 7 20 chr12 76854132 76854434 -67428055 + AluJo SINE Alu 1 298 -14 12356 195 35 19 chr12 76854434 76855578 -67426911 + L1MB2 LINE L1 4989 6235 0 1325 190 116 15 chr12 76855591 76855889 -67426600 + MLT1D LTR MaLR 200 505 0 649 209 41 164 chr12 76855905 76856071 -67426418 + MIR SINE MIR 7 192 -70 2141 105 0 0 chr12 76856071 76856348 -67426141 - AluSc SINE Alu -32 277 1 2206 114 10 0 chr12 76856350 76856649 -67425840 - AluSx SINE Alu -9 303 2 649 209 41 164 chr12 76856649 76856771 -67425718 + MIR SINE MIR 193 262 0 247 79 26 0 chr12 76858074 76858112 -67424377 - MER3 DNA MER1_type -160 49 11 670 196 51 13 chr12 76858155 76858313 -67424176 - L1ME2 LINE L1 -214 5950 5787 1596 221 108 26 chr12 76858336 76858717 -67423772 + MLT1F LTR MaLR 56 467 -75 925 245 72 17 chr12 76858717 76859007 -67423482 - L1M4 LINE L1 -2427 3719 3414 431 324 50 23 chr12 76859041 76859260 -67423229 - L2 LINE L2 -354 2960 2736 660 256 41 12 chr12 76859435 76859607 -67422882 - MER5B DNA MER1_type 0 178 2 535 262 9 113 chr12 76859697 76859926 -67422563 - MIR SINE MIR -30 232 28 26 0 0 0 chr12 76860110 76860136 -67422353 + AT_rich Low_complexity Low_complexity 1 26 0 318 275 30 15 chr12 76860253 76860384 -67422105 + HAL1 LINE L1 1113 1245 -1262 1992 219 53 54 chr12 76860672 76860840 -67421649 + MER49 LTR ERV1 18 185 -738 2309 90 0 46 chr12 76860840 76861163 -67421326 - AluSc SINE Alu -1 308 1 1992 219 53 54 chr12 76861163 76861741 -67420748 + MER49 LTR ERV1 185 923 0 311 98 0 0 chr12 76861968 76862009 -67420480 - MSTA LTR MaLR 0 428 388 2070 111 20 17 chr12 76862009 76862307 -67420182 + AluSx SINE Alu 1 299 -13 2217 135 0 0 chr12 76862494 76862806 -67419683 + AluSx SINE Alu 1 312 0 1558 191 10 42 chr12 76862845 76863154 -67419335 - AluJo SINE Alu -13 299 1 23 33 0 0 chr12 76863432 76863462 -67419027 + AT_rich Low_complexity Low_complexity 1 30 0 288 283 98 26 chr12 76863510 76863927 -67418562 + L1M4 LINE L1 2898 3344 -2802 273 78 20 39 chr12 76863931 76863982 -67418507 - HSMAR2 DNA Mariner 0 1302 1253 497 202 0 0 chr12 76863982 76864076 -67418413 + FLAM_A SINE Alu 49 142 0 8427 117 11 19 chr12 76864076 76865327 -67417162 - HSMAR2 DNA Mariner -53 1249 9 1481 165 112 73 chr12 76865452 76865599 -67416890 + MLT1A2 LTR MaLR 1 141 -233 2201 124 0 0 chr12 76865599 76865898 -67416591 + AluSc SINE Alu 11 309 0 1481 165 112 73 chr12 76865898 76866108 -67416381 + MLT1A2 LTR MaLR 141 372 -2 599 213 16 0 chr12 76866108 76866230 -67416259 + MLT1B-int LTR MaLR 1599 1722 -13 900 171 117 27 chr12 76866242 76866464 -67416025 + MLT1B LTR MaLR 1 242 -148 1196 165 0 46 chr12 76866464 76866548 -67415941 - AluJo SINE Alu -102 210 124 1559 200 7 0 chr12 76866548 76866833 -67415656 - AluJo SINE Alu -25 287 1 1196 165 0 46 chr12 76866833 76866966 -67415523 - AluJo SINE Alu -188 124 3 996 293 45 36 chr12 76867171 76867322 -67415167 + L1M4 LINE L1 3795 3943 -2203 2113 135 33 102 chr12 76867322 76867781 -67414708 - MSTA LTR MaLR -1 427 1 996 293 45 36 chr12 76867781 76868533 -67413956 + L1M4 LINE L1 3943 4706 -1440 2557 70 0 3 chr12 76868537 76868849 -67413640 + AluY SINE Alu 1 311 0 1794 119 34 14 chr12 76868963 76869135 -67413354 - MER2 DNA MER2_type -44 301 119 1897 100 0 0 chr12 76869135 76869374 -67413115 + AluSq SINE Alu 39 277 -36 1794 119 34 14 chr12 76869374 76869495 -67412994 - MER2 DNA MER2_type -226 119 2 850 140 0 22 chr12 76869989 76870125 -67412364 + FLAM_A SINE Alu 1 133 0 296 169 0 34 chr12 76870286 76870345 -67412144 + L2 LINE L2 3164 3220 -93 2220 95 3 13 chr12 76870494 76870798 -67411691 - AluSg SINE Alu -9 301 1 211 264 57 75 chr12 76870906 76871012 -67411477 - L2 LINE L2 -5 3308 3205 842 194 156 0 chr12 76871627 76871813 -67410676 - MER20 DNA MER1_type -1 218 4 860 328 68 47 chr12 76871858 76872525 -67409964 + L2 LINE L2 1854 2534 -780 506 294 59 12 chr12 76872525 76872695 -67409794 - MER5A DNA MER1_type 0 189 12 180 315 157 0 chr12 76872714 76872803 -67409686 + L2 LINE L2 2749 2851 -463 1593 181 47 40 chr12 76872995 76873170 -67409319 - AluJo SINE Alu -11 301 122 2010 130 10 7 chr12 76873170 76873462 -67409027 + AluJb SINE Alu 1 293 -19 1593 181 47 40 chr12 76873462 76873585 -67408904 - AluJo SINE Alu -190 122 1 1618 185 133 33 chr12 76874161 76874614 -67407875 - MLT1D LTR MaLR -7 498 1 1944 136 0 36 chr12 76874752 76875054 -67407435 + AluJo SINE Alu 1 291 -21 361 306 148 21 chr12 76875130 76875414 -67407075 + L3 LINE CR1 1136 1455 -122 2042 96 4 0 chr12 76875753 76876013 -67406476 - AluSp SINE Alu -18 295 35 1717 170 3 48 chr12 76876463 76876774 -67405715 + AluJo SINE Alu 1 297 -15 351 277 158 28 chr12 76876779 76876956 -67405533 + L2 LINE L2 3095 3294 -19 1257 225 47 5 chr12 76877417 76877840 -67404649 - L1M4 LINE L1 -2781 3365 2925 1913 139 0 0 chr12 76877848 76878115 -67404374 + AluSx SINE Alu 1 267 -45 560 108 78 0 chr12 76878129 76878392 -67404097 + (TA)n Simple_repeat Simple_repeat 1 283 0 303 238 5 54 chr12 76878411 76878596 -67403893 + (TTTA)n Simple_repeat Simple_repeat 3 178 0 31 26 0 0 chr12 76878596 76878634 -67403855 + AT_rich Low_complexity Low_complexity 1 38 0 1589 216 65 71 chr12 76878634 76878675 -67403814 - L1M4 LINE L1 -3224 2922 2882 1729 185 37 102 chr12 76878675 76879072 -67403417 + MLT1D LTR MaLR 1 422 -83 200 86 29 0 chr12 76879072 76879107 -67403382 + (TTTAA)n Simple_repeat Simple_repeat 5 40 0 2071 121 0 0 chr12 76879113 76879386 -67403103 - AluSx SINE Alu -39 273 1 1729 185 37 102 chr12 76879386 76879521 -67402968 + MLT1D LTR MaLR 427 505 0 1589 216 65 71 chr12 76879521 76879653 -67402836 - L1M4 LINE L1 -3264 2882 2751 697 193 196 53 chr12 76879653 76879733 -67402756 - MER2 DNA MER2_type 0 344 277 1579 171 0 85 chr12 76879733 76880049 -67402440 + AluJb SINE Alu 1 289 -23 697 193 196 53 chr12 76880049 76880269 -67402220 - MER2 DNA MER2_type -67 277 1 1589 216 65 71 chr12 76880269 76880515 -67401974 - L1M4 LINE L1 -3395 2751 2505 1772 178 0 16 chr12 76880515 76880830 -67401659 - AluJb SINE Alu -2 310 1 1589 216 65 71 chr12 76880830 76881042 -67401447 - L1M4 LINE L1 -3641 2505 2293 1691 107 4 0 chr12 76881042 76881275 -67401214 - AluSc SINE Alu 0 309 76 1500 94 9 24 chr12 76881391 76881604 -67400885 + AluSc SINE Alu 87 296 -13 236 284 49 12 chr12 76881611 76881692 -67400797 - MIR SINE MIR -146 116 33 2149 104 19 16 chr12 76881753 76882062 -67400427 - AluSx SINE Alu -2 310 1 1146 159 66 152 chr12 76882370 76882766 -67399723 + MLT1A1 LTR MaLR 4 365 0 399 243 45 9 chr12 76882791 76882902 -67399587 + L2 LINE L2 3199 3313 0 2187 115 0 0 chr12 76883009 76883297 -67399192 - AluSx SINE Alu -24 288 1 851 295 63 60 chr12 76883784 76884405 -67398084 + L1MEc LINE L1 142 764 -5632 2206 300 82 9 chr12 76884434 76885686 -67396803 + L1MEc LINE L1 297 1639 -4757 341 151 0 0 chr12 76885687 76885740 -67396749 + 5S rRNA rRNA 37 89 -32 26 30 0 0 chr12 76885759 76885792 -67396697 + AT_rich Low_complexity Low_complexity 1 33 0 434 294 118 0 chr12 76885805 76886009 -67396480 + L1MEc LINE L1 1650 1877 -4519 * 2820 241 38 44 chr12 76886005 76886487 -67396002 + L1MEc LINE L1 3230 3713 -2502 1669 181 7 7 chr12 76886487 76886796 -67395693 - AluJo SINE Alu -3 309 1 2820 241 38 44 chr12 76886796 76887464 -67395025 + L1MEc LINE L1 3713 4373 -1842 1024 49 0 0 chr12 76887464 76887626 -67394863 - AluY SINE Alu 0 323 162 764 148 8 0 chr12 76887663 76887791 -67394698 + AluSq/x SINE Alu 1 129 -184 32 57 0 0 chr12 76887948 76888001 -67394488 + AT_rich Low_complexity Low_complexity 1 53 0 671 267 16 29 chr12 76888228 76888535 -67393954 + AluSq SINE Alu 1 303 0 2136 134 0 3 chr12 76888705 76889011 -67393478 + AluSx SINE Alu 1 305 -7 1079 184 192 12 chr12 76889298 76889543 -67392946 + AluJb SINE Alu 1 289 -13 320 59 20 0 chr12 76889544 76889595 -67392894 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 495 215 38 86 chr12 76889645 76889854 -67392635 - L1M4 LINE L1 -1496 4650 4452 290 100 0 0 chr12 76889861 76889901 -67392588 - LTR47A LTR ERVL 0 452 413 1607 146 91 20 chr12 76889921 76890263 -67392226 - LTR10A LTR ERV1 -61 548 183 978 186 55 0 chr12 76890372 76890571 -67391918 - LTR47A LTR ERVL -46 406 197 3785 142 57 19 chr12 76890646 76891384 -67391105 + LTR1 LTR ERV1 13 778 -7 1206 78 0 0 chr12 76891389 76891556 -67390933 - LTR47A LTR ERVL -285 167 1 268 157 14 0 chr12 76891560 76891630 -67390859 - L1M4 LINE L1 -1701 4445 4375 786 142 8 15 chr12 76891630 76891764 -67390725 + FLAM_C SINE Alu 1 133 0 1782 186 0 10 chr12 76891788 76892094 -67390395 + AluJb SINE Alu 10 312 0 1966 162 3 0 chr12 76892119 76892427 -67390062 + AluJb SINE Alu 3 311 -1 2376 57 7 7 chr12 76892616 76892913 -67389576 - AluY SINE Alu -14 297 1 193 87 22 22 chr12 76892913 76892959 -67389530 + (TA)n Simple_repeat Simple_repeat 2 47 0 1156 123 0 0 chr12 76892959 76893121 -67389368 + AluSg/x SINE Alu 130 291 -21 204 40 0 0 chr12 76893511 76893536 -67388953 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2151 109 6 6 chr12 76894355 76894666 -67387823 + AluSx SINE Alu 1 311 -1 193 319 10 118 chr12 76894769 76895057 -67387432 - L2 LINE L2 -51 3221 2965 248 0 31 0 chr12 76895704 76895736 -67386753 + (CGG)n Simple_repeat Simple_repeat 1 33 0 181 207 0 0 chr12 76896515 76896544 -67385945 + MIR SINE MIR 120 148 -60 711 207 104 16 chr12 76896730 76896923 -67385566 + MIR SINE MIR 28 237 -25 345 284 96 71 chr12 76897342 76897581 -67384908 - MIR SINE MIR 0 262 18 1941 114 22 7 chr12 76897701 76897973 -67384516 - AluSx SINE Alu -36 276 1 198 286 0 0 chr12 76898553 76898595 -67383894 - L3 LINE CR1 -137 1440 1399 2263 113 0 0 chr12 76898595 76898896 -67383593 - AluSx SINE Alu -11 301 1 650 297 77 77 chr12 76898952 76899068 -67383421 - L3 LINE CR1 -300 1277 1162 1515 171 80 0 chr12 76899068 76899342 -67383147 - AluJo SINE Alu -6 296 1 650 297 77 77 chr12 76899342 76899770 -67382719 - L3 LINE CR1 -414 1163 733 386 230 36 93 chr12 76899843 76899982 -67382507 - L3 LINE CR1 -840 737 607 317 273 23 0 chr12 76900251 76900339 -67382150 - L3 LINE CR1 -1088 489 400 544 275 96 33 chr12 76900350 76900590 -67381899 + MIR SINE MIR 5 259 -3 200 359 26 0 chr12 76900622 76900700 -67381789 - L3 LINE CR1 -1171 406 327 265 297 40 14 chr12 76901085 76901159 -67381330 - L2 LINE L2 -8 3264 3189 204 266 53 43 chr12 76901434 76901487 -67381002 - MIR SINE MIR -98 164 108 1582 192 7 14 chr12 76901487 76901784 -67380705 + AluJo SINE Alu 1 295 -17 204 266 53 43 chr12 76901784 76901824 -67380665 - MIR SINE MIR -154 108 70 754 163 41 0 chr12 76901831 76901954 -67380535 + FLAM_C SINE Alu 2 129 -4 2239 126 3 0 chr12 76901960 76902269 -67380220 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr12 76902324 76902347 -67380142 + AT_rich Low_complexity Low_complexity 1 23 0 2361 8 0 0 chr12 76902850 76903141 -67379348 - AluY SINE Alu 0 318 28 1987 135 14 0 chr12 76903144 76903440 -67379049 - AluSx SINE Alu -10 302 3 31 0 0 0 chr12 76903557 76903588 -67378901 + AT_rich Low_complexity Low_complexity 1 31 0 267 31 0 0 chr12 76903659 76903691 -67378798 + (CA)n Simple_repeat Simple_repeat 1 32 0 25 31 0 0 chr12 76903995 76904027 -67378462 + AT_rich Low_complexity Low_complexity 1 32 0 391 251 158 33 chr12 76904436 76904619 -67377870 + MIR SINE MIR 30 235 -27 5891 127 19 6 chr12 76905030 76906406 -67376083 - L1PB2 LINE L1 -2 6149 4759 27 73 0 0 chr12 76906421 76906476 -67376013 + AT_rich Low_complexity Low_complexity 1 55 0 918 226 32 40 chr12 76906870 76907118 -67375371 + MIR SINE MIR 7 252 -10 292 280 0 0 chr12 76907549 76907624 -67374865 + MIR SINE MIR 188 262 0 193 29 29 29 chr12 76908052 76908087 -67374402 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 422 202 36 24 chr12 76908486 76908570 -67373919 - MIR SINE MIR -171 91 7 21 36 0 0 chr12 76908670 76908698 -67373791 + AT_rich Low_complexity Low_complexity 1 28 0 261 212 35 71 chr12 76908707 76908792 -67373697 + MIR SINE MIR 23 104 -158 229 250 83 14 chr12 76909191 76909263 -67373226 + L2 LINE L2 2686 2762 -552 248 279 139 0 chr12 76909365 76909494 -67372995 + MER103 DNA DNA 11 157 -9 180 0 0 0 chr12 76909494 76909514 -67372975 + (TG)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr12 76910509 76910532 -67371957 + AT_rich Low_complexity Low_complexity 1 23 0 2115 128 0 7 chr12 76912257 76912554 -67369935 + AluSx SINE Alu 1 295 -17 925 254 57 39 chr12 76912581 76913060 -67369429 - MLT1H LTR MaLR -5 544 10 931 139 76 6 chr12 76913845 76914017 -67368472 + MER20 DNA MER1_type 36 219 0 23 33 0 0 chr12 76914695 76914725 -67367764 + AT_rich Low_complexity Low_complexity 1 30 0 1826 142 3 65 chr12 76914731 76915041 -67367448 + AluSx SINE Alu 1 291 -21 2264 106 7 0 chr12 76915043 76915344 -67367145 + AluSx SINE Alu 1 303 -9 355 287 218 6 chr12 76915744 76915918 -67366571 - MIR SINE MIR -16 246 36 2360 85 0 0 chr12 76916109 76916402 -67366087 - AluSg SINE Alu -17 293 1 25 31 0 0 chr12 76917113 76917145 -67365344 + AT_rich Low_complexity Low_complexity 1 32 0 317 102 41 0 chr12 76917228 76917277 -67365212 + LTR8 LTR ERV1 535 585 -106 215 306 0 0 chr12 76917369 76917418 -67365071 + MER5B DNA MER1_type 67 115 -63 207 196 20 0 chr12 76917444 76917495 -67364994 - L2 LINE L2 -1 3312 3261 194 271 0 17 chr12 76917575 76917634 -67364855 - L3 LINE CR1 -197 1380 1323 746 238 121 37 chr12 76917652 76918031 -67364458 - L1ME3A LINE L1 -26 6144 5734 742 330 192 20 chr12 76918203 76918839 -67363650 - L3 LINE CR1 -291 1286 542 195 174 0 174 chr12 76918878 76918947 -67363542 - L2 LINE L2 -5 3308 3252 * 634 261 87 14 chr12 76918914 76919121 -67363368 - MIR SINE MIR -23 239 18 315 316 141 23 chr12 76919117 76919294 -67363195 - L2 LINE L2 -10 3303 3106 * 559 117 0 0 chr12 76919429 76919506 -67362983 + AluS SINE Alu 2 78 -234 318 244 259 0 chr12 76919609 76919744 -67362745 - MIR SINE MIR -15 247 78 1877 146 23 3 chr12 76919745 76920046 -67362443 + AluJb SINE Alu 1 307 -5 25 65 0 0 chr12 76920593 76920639 -67361850 + AT_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr12 76920671 76920713 -67361776 + AT_rich Low_complexity Low_complexity 1 42 0 2512 47 7 0 chr12 76921754 76922053 -67360436 + AluY SINE Alu 1 301 -10 21 0 0 0 chr12 76923458 76923479 -67359010 + AT_rich Low_complexity Low_complexity 1 21 0 694 165 125 22 chr12 76923490 76923762 -67358727 + L1MC5 LINE L1 7480 7779 -182 919 236 22 0 chr12 76924101 76924283 -67358206 + MER5A DNA MER1_type 4 189 0 277 298 48 0 chr12 76924320 76924404 -67358085 - MER5A DNA MER1_type -83 106 19 225 132 0 0 chr12 76924404 76924442 -67358047 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 383 183 155 7 chr12 76924476 76924618 -67357871 - Charlie7 DNA MER1_type 0 2612 2450 1462 230 38 52 chr12 76924771 76925331 -67357158 - L1M4 LINE L1 -897 5249 4698 1634 172 7 23 chr12 76925376 76925684 -67356805 + AluJo SINE Alu 1 303 -9 2636 48 0 0 chr12 76926457 76926768 -67355721 - AluY SINE Alu 0 311 1 568 223 15 15 chr12 76928571 76928701 -67353788 + FLAM_A SINE Alu 1 130 -3 222 118 0 0 chr12 76931436 76931470 -67351019 + (T)n Simple_repeat Simple_repeat 1 34 0 1864 158 6 28 chr12 76931541 76931858 -67350631 - AluJo SINE Alu -2 310 1 1595 164 14 38 chr12 76932441 76932734 -67349755 - AluJo SINE Alu -22 290 5 236 245 0 85 chr12 76933242 76933336 -67349153 - L2 LINE L2 -18 3254 3169 1975 137 3 22 chr12 76934499 76934812 -67347677 + AluJb SINE Alu 1 307 -5 785 231 50 18 chr12 76935338 76935719 -67346770 - L1M4 LINE L1 -2919 3227 2835 * 8318 187 43 52 chr12 76935686 76936087 -67346402 - L1MB3 LINE L1 -8 6234 5831 2242 97 0 10 chr12 76936087 76936386 -67346103 - AluSg SINE Alu -14 296 1 8318 187 43 52 chr12 76936386 76937282 -67345207 - L1MB3 LINE L1 -411 5831 4929 2244 98 7 3 chr12 76937282 76937589 -67344900 - AluSg SINE Alu -2 308 1 8318 187 43 52 chr12 76937589 76938165 -67344324 - L1MB3 LINE L1 -1313 4929 4349 2240 88 3 0 chr12 76938165 76938470 -67344019 - AluSg SINE Alu 0 306 1 8318 187 43 52 chr12 76938470 76939839 -67342650 - L1MB3 LINE L1 -1893 4349 3052 2276 94 3 0 chr12 76939874 76940181 -67342308 - AluY SINE Alu -3 308 1 289 187 32 128 chr12 76940225 76940412 -67342077 + MER104 DNA Tc2 3 171 -9 1280 268 94 23 chr12 76940418 76941037 -67341452 - HAL1 LINE L1 -45 2462 1800 387 264 49 42 chr12 76941057 76941178 -67341311 - HAL1 LINE L1 -1301 1206 1082 2093 148 0 0 chr12 76941178 76941481 -67341008 - AluSx SINE Alu -9 303 1 387 264 49 42 chr12 76941481 76941503 -67340986 - HAL1 LINE L1 -1425 1082 1062 322 71 0 0 chr12 76942008 76942050 -67340439 - 5S rRNA rRNA -79 42 1 720 222 84 145 chr12 76942234 76942607 -67339882 - HAL1 LINE L1 -1423 1084 745 2111 111 10 0 chr12 76942607 76942895 -67339594 - AluSg SINE Alu -19 291 1 720 222 84 145 chr12 76942895 76942998 -67339491 - HAL1 LINE L1 -1762 745 637 226 316 128 17 chr12 76943294 76943411 -67339078 + MIR3 SINE MIR 58 187 -21 441 167 198 123 chr12 76943959 76944050 -67338439 - MER5A DNA MER1_type -7 182 99 2052 120 7 20 chr12 76944050 76944350 -67338139 - AluSx SINE Alu -14 298 3 441 167 198 123 chr12 76944350 76944420 -67338069 - MER5A DNA MER1_type -90 99 9 393 264 48 78 chr12 76944442 76944711 -67337778 - L2 LINE L2 -983 2331 2071 242 190 86 0 chr12 76944770 76944828 -67337661 - MIR SINE MIR 0 262 200 287 270 157 9 chr12 76945522 76945637 -67336852 - MIR SINE MIR -59 203 72 1993 109 7 13 chr12 76945936 76946238 -67336251 + AluSx SINE Alu 1 300 -12 28 29 0 0 chr12 76947797 76947832 -67334657 + AT_rich Low_complexity Low_complexity 1 35 0 212 362 131 22 chr12 76948325 76948637 -67333852 + L2 LINE L2 2378 2723 -591 679 240 98 6 chr12 76949069 76949252 -67333237 + MIR SINE MIR 2 201 -61 218 308 0 0 chr12 76949298 76949350 -67333139 + L2 LINE L2 3201 3252 -20 2065 152 0 0 chr12 76949385 76949687 -67332802 + AluJo SINE Alu 3 304 -8 1668 136 79 4 chr12 76949826 76950105 -67332384 + AluSx SINE Alu 1 300 -12 189 263 197 13 chr12 76950378 76950454 -67332035 - L2 LINE L2 0 3272 3183 461 156 26 0 chr12 76950457 76950558 -67331931 - AluJb SINE Alu 0 315 213 401 290 191 21 chr12 76950766 76951049 -67331440 + L2 LINE L2 2323 2653 -661 405 361 49 83 chr12 76951233 76951582 -67330907 + L2 LINE L2 2934 3270 -2 186 269 21 97 chr12 76951846 76951939 -67330550 - L2 LINE L2 -261 3011 2926 183 328 103 20 chr12 76952213 76952417 -67330072 - L2 LINE L2 -827 2487 2267 28 48 0 0 chr12 76952704 76952746 -67329743 + AT_rich Low_complexity Low_complexity 1 42 0 188 163 70 23 chr12 76953294 76953337 -67329152 + L2 LINE L2 3265 3309 -4 1644 185 13 0 chr12 76953577 76953879 -67328610 - AluJb SINE Alu -6 306 1 369 246 94 7 chr12 76953882 76953940 -67328549 - L1MA10 LINE L1 -9 6325 6268 2537 205 39 78 chr12 76953940 76954237 -67328252 - L1ME1 LINE L1 -68 6098 5791 2302 90 7 0 chr12 76954237 76954525 -67327964 + AluSg SINE Alu 1 290 -20 2537 205 39 78 chr12 76954525 76954638 -67327851 - L1ME1 LINE L1 -375 5791 5675 2290 107 3 0 chr12 76954638 76954947 -67327542 + AluSp SINE Alu 1 310 -3 2537 205 39 78 chr12 76954947 76955429 -67327060 - L1ME1 LINE L1 -491 5675 5248 27 0 0 0 chr12 76955450 76955477 -67327012 + AT_rich Low_complexity Low_complexity 1 27 0 231 61 0 0 chr12 76955986 76956019 -67326470 + (A)n Simple_repeat Simple_repeat 1 33 0 1606 154 7 55 chr12 76957256 76957492 -67324997 - AluJo SINE Alu -34 278 32 2423 101 72 46 chr12 76957492 76957529 -67324960 - MSTA LTR MaLR 0 428 393 2361 101 3 0 chr12 76957529 76957835 -67324654 + AluSc SINE Alu 1 307 -2 2423 101 72 46 chr12 76957835 76958214 -67324275 - MSTA LTR MaLR -35 393 1 8970 161 35 10 chr12 76958220 76959830 -67322659 - MSTA-int LTR MaLR 0 1651 1 2491 124 51 7 chr12 76959830 76960240 -67322249 - MSTA LTR MaLR 0 428 1 1606 154 7 55 chr12 76960240 76960287 -67322202 - AluJo SINE Alu -283 29 1 2116 261 103 30 chr12 76960296 76961171 -67321318 - L1MEc LINE L1 -5424 972 34 1868 127 78 39 chr12 76961784 76962145 -67320344 - THE1C LTR MaLR 0 375 1 1956 56 0 4 chr12 76962279 76962510 -67319979 + AluY SINE Alu 68 297 -14 281 324 108 0 chr12 76963718 76963820 -67318669 + MIR SINE MIR 88 200 -62 38 0 0 0 chr12 76963887 76963925 -67318564 + AT_rich Low_complexity Low_complexity 1 38 0 657 157 0 79 chr12 76963925 76964065 -67318424 - FLAM_C SINE Alu -4 129 1 4506 143 36 38 chr12 76964386 76964882 -67317607 - L1MA5 LINE L1 0 7002 6506 2292 102 3 0 chr12 76964882 76965187 -67317302 - AluSp SINE Alu -7 306 1 4506 143 36 38 chr12 76965187 76965360 -67317129 - L1MA5 LINE L1 -496 6506 6334 1906 153 16 19 chr12 76965360 76965673 -67316816 - AluJb SINE Alu 0 312 1 4506 143 36 38 chr12 76965673 76965952 -67316537 - L1MA5 LINE L1 -668 6334 6055 510 155 0 0 chr12 76965968 76966052 -67316437 - LTR23 LTR ERV1 -34 403 320 12560 191 52 22 chr12 76966053 76966428 -67316061 - L1MA5 LINE L1 -780 6068 5706 2102 138 0 10 chr12 76966428 76966726 -67315763 - AluSx SINE Alu -17 295 1 12560 191 52 22 chr12 76966726 76969912 -67312577 - L1MA5 LINE L1 -1142 5706 2344 2328 82 0 0 chr12 76969912 76970220 -67312269 + AluY SINE Alu 1 308 0 12560 191 52 22 chr12 76970220 76970818 -67311671 - L1MA5 LINE L1 -4504 2344 1766 204 40 0 0 chr12 76971113 76971138 -67311351 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 858 320 160 29 chr12 76972936 76973836 -67308653 + L1MC4a LINE L1 4121 5138 -1008 2022 141 0 3 chr12 76973874 76974158 -67308331 - AluSx SINE Alu -25 287 5 283 239 98 27 chr12 76974283 76974467 -67308022 + L1MC4a LINE L1 5262 5458 -2350 262 214 9 62 chr12 76975080 76975192 -67307297 + LTR33A LTR ERVL 415 520 -3 620 268 134 20 chr12 76975193 76975499 -67306990 + L1MC4a LINE L1 5566 5906 -1902 2266 126 0 0 chr12 76975568 76975869 -67306620 + AluSx SINE Alu 1 301 -11 2637 213 71 24 chr12 76975901 76976751 -67305738 - L1ME1 LINE L1 -88 6078 5270 1852 133 42 3 chr12 76976751 76977036 -67305453 - AluSq SINE Alu -15 298 3 2637 213 71 24 chr12 76977036 76977334 -67305155 - L1ME1 LINE L1 -896 5270 4988 1912 158 0 13 chr12 76977334 76977637 -67304852 - AluJo SINE Alu -13 299 1 2637 213 71 24 chr12 76977637 76977888 -67304601 - L1ME1 LINE L1 -1178 4988 4617 2007 121 3 30 chr12 76978003 76978300 -67304189 - AluSg SINE Alu -21 289 1 321 47 0 0 chr12 76978354 76978397 -67304092 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 225 0 0 0 chr12 76978753 76978779 -67303710 + MER116 DNA Mariner 52 77 -3 459 308 0 31 chr12 76978813 76978943 -67303546 - L2 LINE L2 -1 3271 3146 817 235 109 13 chr12 76979129 76979367 -67303122 + MIR SINE MIR 2 262 0 237 314 73 16 chr12 76979597 76979721 -67302768 + L2 LINE L2 1791 1921 -1393 538 296 41 36 chr12 76979749 76979869 -67302620 + L2 LINE L2 3089 3212 -101 3626 152 139 15 chr12 76979869 76980604 -67301885 + LTR1B LTR ERV1 1 826 0 538 296 41 36 chr12 76980604 76980703 -67301786 + L2 LINE L2 3212 3309 -4 1831 117 4 7 chr12 76980868 76981149 -67301340 - L1PB2 LINE L1 0 6151 5872 439 202 119 77 chr12 76981420 76981588 -67300901 - MER5B DNA MER1_type -3 175 1 815 277 73 25 chr12 76983121 76983437 -67299052 - L1MC4a LINE L1 -383 5787 5511 1450 239 109 67 chr12 76983437 76984141 -67298348 + MER50 LTR ERV1 1 734 0 815 277 73 25 chr12 76984141 76984378 -67298111 - L1MC4a LINE L1 -659 5511 5287 1273 259 191 22 chr12 76984422 76985172 -67297317 - L2 LINE L2 0 3313 2423 1952 256 33 12 chr12 76985273 76985874 -67296615 + HsTC2c DNA Tc2 114 727 -2 1128 287 49 11 chr12 76985876 76986224 -67296265 - L2 LINE L2 -1072 2242 1882 2100 129 3 0 chr12 76987518 76987813 -67294676 + AluSx SINE Alu 1 296 -16 428 211 0 11 chr12 76988094 76988189 -67294300 + L1MC4a LINE L1 5820 5913 -1895 2211 99 3 0 chr12 76988213 76988531 -67293958 - AluSq SINE Alu 0 319 1 2000 139 3 7 chr12 76988534 76988835 -67293654 - AluSx SINE Alu -12 300 1 236 288 68 57 chr12 76989145 76989322 -67293167 + L1MC4a LINE L1 6416 6594 -1214 1207 112 12 0 chr12 76989327 76989496 -67292993 + AluSg/x SINE Alu 128 298 -14 1108 240 57 79 chr12 76989496 76989992 -67292497 + L1MC5 LINE L1 6625 7109 -852 603 129 0 0 chr12 76989994 76990079 -67292410 - AluSc SINE Alu -76 233 149 422 239 45 0 chr12 76990079 76990228 -67292261 + L1MC5 LINE L1 7020 7225 -632 744 206 91 35 chr12 76990308 76990595 -67291894 + L1MC5 LINE L1 7249 7551 -410 1489 113 0 5 chr12 76990960 76991164 -67291325 - AluSg/x SINE Alu -15 297 95 473 280 109 11 chr12 76991197 76991372 -67291117 - L2 LINE L2 0 3313 3122 571 78 13 0 chr12 76991373 76991450 -67291039 - AluS SINE Alu -234 78 1 261 0 0 0 chr12 76991745 76991774 -67290715 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1270 174 103 0 chr12 76991778 76992020 -67290469 - AluJo SINE Alu -45 267 1 865 314 69 26 chr12 76992070 76992449 -67290040 - L2 LINE L2 0 3313 2919 808 313 51 3 chr12 76992492 76992786 -67289703 - L2 LINE L2 -541 2773 2466 2409 129 27 16 chr12 76993280 76993338 -67289151 + L1MA8 LINE L1 5845 5901 -390 2088 138 16 0 chr12 76993338 76993642 -67288847 + AluSq SINE Alu 1 309 -4 2172 104 15 55 chr12 76993648 76993974 -67288515 + AluSq SINE Alu 1 313 0 2409 129 27 16 chr12 76993974 76994350 -67288139 + L1MA8 LINE L1 5905 6291 0 2289 101 0 3 chr12 76994933 76995240 -67287249 + AluSc SINE Alu 1 306 -3 206 371 0 0 chr12 76995267 76995337 -67287152 - MIR3 SINE MIR -48 160 91 233 263 63 0 chr12 76995660 76995755 -67286734 - MLT1K LTR MaLR 0 588 488 886 295 28 12 chr12 76995954 76996205 -67286284 + L2 LINE L2 2718 2972 -342 4846 119 17 41 chr12 76996362 76996881 -67285608 - L1MA9 LINE L1 -7 6305 5775 276 30 0 0 chr12 76996881 76996914 -67285575 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 482 46 15 0 chr12 76996913 76996978 -67285511 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 4846 119 17 41 chr12 76996914 76997337 -67285152 - L1MA9 LINE L1 -537 5775 5448 229 281 35 0 chr12 76997339 76997396 -67285093 + L2 LINE L2 2964 3022 -291 2146 99 0 7 chr12 76998022 76998347 -67284142 - AluSx SINE Alu 0 324 2 1863 123 38 20 chr12 76998433 76998725 -67283764 + AluSx SINE Alu 1 297 -15 265 220 44 22 chr12 76999014 76999105 -67283384 + MER103 DNA DNA 67 159 -7 27 62 0 0 chr12 76999507 76999555 -67282934 + AT_rich Low_complexity Low_complexity 1 48 0 225 0 0 0 chr12 77000183 77000208 -67282281 + (CA)n Simple_repeat Simple_repeat 2 26 0 2129 104 0 7 chr12 77000222 77000511 -67281978 - AluSg SINE Alu -19 291 5 1512 196 21 15 chr12 77000517 77000844 -67281645 + MLT1A1 LTR MaLR 37 365 0 39 22 0 0 chr12 77001034 77001080 -67281409 + AT_rich Low_complexity Low_complexity 1 46 0 2275 63 56 0 chr12 77001484 77001768 -67280721 + AluY SINE Alu 1 300 -11 313 280 9 56 chr12 77002150 77002257 -67280232 + MIR3 SINE MIR 64 165 -43 580 211 35 47 chr12 77002266 77002437 -67280052 + MLT1H LTR MaLR 1 169 -380 2219 115 0 3 chr12 77002589 77002885 -67279604 + AluSq SINE Alu 1 295 -18 180 0 0 0 chr12 77002885 77002905 -67279584 + (TA)n Simple_repeat Simple_repeat 2 21 0 857 216 108 4 chr12 77002906 77003137 -67279352 - MER110 LTR ERV1 -49 442 188 829 251 66 17 chr12 77003331 77003864 -67278625 - L1M4 LINE L1 -2753 3393 2835 * 3765 199 32 21 chr12 77003831 77004716 -67277773 - L1MD2 LINE L1 -10 6349 5456 * 3797 176 40 52 chr12 77004697 77004971 -67277518 - L1MB3 LINE L1 -42 7162 6886 2242 97 0 10 chr12 77004971 77005270 -67277219 - AluSg SINE Alu -14 296 1 3797 176 40 52 chr12 77005270 77006166 -67276323 - L1MB3 LINE L1 -318 6886 6026 2244 98 7 3 chr12 77006166 77006473 -67276016 - AluSg SINE Alu -2 308 1 3797 176 40 52 chr12 77006473 77007026 -67275463 - L1MB3 LINE L1 -1178 6026 5468 2198 99 3 0 chr12 77007049 77007354 -67275135 - AluSg SINE Alu 0 306 1 9438 170 27 54 chr12 77007362 77007475 -67275014 - L1MB3 LINE L1 -5169 1999 1884 2015 115 0 0 chr12 77007475 77007790 -67274699 - AluSg1 SINE Alu 0 315 1 9438 170 27 54 chr12 77007790 77009607 -67272882 - L1MB3 LINE L1 -5284 1884 125 858 147 0 8 chr12 77009607 77009736 -67272753 - FLAM_C SINE Alu -5 128 1 9438 170 27 54 chr12 77009736 77009858 -67272631 - L1MB3 LINE L1 -7043 125 1 203 207 0 138 chr12 77010393 77010480 -67272009 + MIR SINE MIR 118 192 -70 703 144 140 144 chr12 77010508 77010643 -67271846 - MER46A DNA MER2_type -2495 236 101 879 153 0 0 chr12 77010643 77010774 -67271715 - FLAM_C SINE Alu -2 131 1 703 144 140 144 chr12 77010774 77010874 -67271615 - MER46A DNA MER2_type -2630 101 2 27 0 0 0 chr12 77011006 77011033 -67271456 + AT_rich Low_complexity Low_complexity 1 27 0 2361 75 0 3 chr12 77011226 77011531 -67270958 - AluY SINE Alu -7 304 1 413 287 70 0 chr12 77011979 77012122 -67270367 - L1MA9 LINE L1 -38 6274 6122 * 810 191 42 76 chr12 77012121 77012226 -67270263 + L1MA9 LINE L1 5857 5964 -348 2117 117 0 0 chr12 77012226 77012539 -67269950 + AluSx SINE Alu 1 313 0 810 191 42 76 chr12 77012539 77012694 -67269795 + L1MA9 LINE L1 5964 6109 -203 23 0 0 0 chr12 77012845 77012868 -67269621 + AT_rich Low_complexity Low_complexity 1 23 0 218 195 24 0 chr12 77013215 77013256 -67269233 + CT-rich Low_complexity Low_complexity 3 44 0 237 155 77 0 chr12 77013259 77013314 -67269175 - L1ME LINE L1 -401 5720 5664 344 264 110 114 chr12 77013584 77013838 -67268651 + MIR SINE MIR 5 257 -5 24 53 0 0 chr12 77014028 77014066 -67268423 + AT_rich Low_complexity Low_complexity 1 38 0 850 184 74 6 chr12 77014568 77014731 -67267758 - FAM SINE Alu -1 174 1 22 56 0 0 chr12 77014914 77014950 -67267539 + AT_rich Low_complexity Low_complexity 1 36 0 2142 159 22 0 chr12 77015308 77015666 -67266823 - MER47A DNA MER2_type 0 366 1 1454 139 45 15 chr12 77016031 77016297 -67266192 - L1MB7 LINE L1 -5 6179 5906 2147 150 61 53 chr12 77016397 77016903 -67265586 - L1MB8 LINE L1 -222 5956 5447 1762 186 86 36 chr12 77016905 77017262 -67265227 - MLT1C LTR MaLR -2 465 80 544 89 13 0 chr12 77017262 77017341 -67265148 + MADE1 DNA Mariner 1 80 0 1762 186 86 36 chr12 77017341 77017425 -67265064 - MLT1C LTR MaLR -387 80 2 497 130 35 43 chr12 77017425 77017540 -67264949 - L1MB8 LINE L1 -710 5452 5339 464 158 40 0 chr12 77017618 77017694 -67264795 + MER2 DNA MER2_type 267 345 0 1319 176 17 108 chr12 77017694 77017756 -67264733 - L1MB8 LINE L1 -784 5362 5296 2312 97 0 0 chr12 77017756 77018054 -67264435 - AluSx SINE Alu -11 301 4 1319 176 17 108 chr12 77018054 77018078 -67264411 - L1MB8 LINE L1 -850 5296 5271 1857 128 7 0 chr12 77018078 77018352 -67264137 - AluJb SINE Alu -15 297 22 1319 176 17 108 chr12 77018352 77018672 -67263817 - L1MB8 LINE L1 -875 5271 4992 321 130 0 0 chr12 77018722 77018768 -67263721 - L1PB4 LINE L1 -90 6066 6021 267 133 0 0 chr12 77018769 77018814 -67263675 - L1MB8 LINE L1 -1142 5004 4960 1976 128 20 10 chr12 77018922 77019227 -67263262 - AluSg SINE Alu -2 308 1 495 251 76 33 chr12 77019294 77019505 -67262984 - HAL1 LINE L1 -49 2458 2239 * 2307 238 104 83 chr12 77019503 77019929 -67262560 - HAL1 LINE L1 -502 2005 1589 2193 120 0 13 chr12 77019929 77020245 -67262244 - AluSx SINE Alu 0 312 1 2307 238 104 83 chr12 77020245 77020618 -67261871 - HAL1 LINE L1 -918 1589 1225 629 58 0 11 chr12 77020618 77020705 -67261784 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2307 238 104 83 chr12 77020705 77021400 -67261089 - HAL1 LINE L1 -1282 1225 479 180 0 0 0 chr12 77021546 77021566 -67260923 + (GA)n Simple_repeat Simple_repeat 2 21 0 2079 107 7 3 chr12 77021653 77021951 -67260538 - AluSx SINE Alu -13 299 1 2113 117 0 7 chr12 77022270 77022569 -67259920 - AluSq SINE Alu -16 297 1 421 300 123 15 chr12 77022690 77022950 -67259539 - L1ME LINE L1 -576 5545 5258 24 32 0 0 chr12 77023571 77023602 -67258887 + AT_rich Low_complexity Low_complexity 1 31 0 649 196 28 56 chr12 77024204 77024347 -67258142 + Tigger3(Golem) DNA MER2_type 4 142 -2887 * 706 138 0 9 chr12 77024345 77024454 -67258035 + Tigger3(Golem) DNA MER2_type 2772 2879 -150 531 188 163 56 chr12 77024521 77024681 -67257808 - MER5B DNA MER1_type -1 177 1 2061 105 0 10 chr12 77024952 77025257 -67257232 + AluSc SINE Alu 1 302 -7 596 203 39 31 chr12 77026017 77026145 -67256344 - L2 LINE L2 0 3313 3185 222 195 0 0 chr12 77026434 77026475 -67256014 + CT-rich Low_complexity Low_complexity 4 44 0 673 303 17 17 chr12 77027637 77027868 -67254621 - MIR SINE MIR -10 252 22 22 35 0 0 chr12 77027933 77027962 -67254527 + AT_rich Low_complexity Low_complexity 1 29 0 566 317 56 83 chr12 77028839 77029306 -67253183 - L2 LINE L2 -10 3262 2809 265 246 235 11 chr12 77029326 77029505 -67252984 - L2 LINE L2 -682 2632 2414 230 0 0 32 chr12 77029506 77029537 -67252952 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 1789 117 0 4 chr12 77029538 77029787 -67252702 - AluSx SINE Alu -64 248 1 181 236 167 0 chr12 77029825 77029897 -67252592 + L3 LINE CR1 639 722 -855 353 336 79 51 chr12 77030145 77030359 -67252130 + L3 LINE CR1 883 1102 -475 185 272 78 48 chr12 77030623 77030726 -67251763 + L3 LINE CR1 1135 1240 -337 219 333 0 11 chr12 77030728 77030818 -67251671 + L2 LINE L2 2768 2856 -458 537 278 94 11 chr12 77030949 77031129 -67251360 + L2 LINE L2 3119 3313 0 238 260 63 87 chr12 77031129 77031256 -67251233 + L3 LINE CR1 1236 1359 -218 1810 117 64 14 chr12 77031425 77031706 -67250783 + AluSx SINE Alu 5 299 -13 329 263 0 51 chr12 77032079 77032197 -67250292 - L2 LINE L2 -1 3312 3201 3012 110 2 7 chr12 77032851 77033305 -67249184 - L1PA15 LINE L1 -2 6163 5712 240 111 0 0 chr12 77037065 77037101 -67245388 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 211 186 0 34 chr12 77039350 77039409 -67243080 + T-rich Low_complexity Low_complexity 4 60 0 304 272 71 18 chr12 77041462 77041631 -67240858 - L1ME4a LINE L1 0 6121 5944 329 203 29 0 chr12 77041760 77041829 -67240660 - MIR SINE MIR -110 152 82 24 0 0 0 chr12 77041999 77042023 -67240466 + AT_rich Low_complexity Low_complexity 1 24 0 200 244 0 0 chr12 77042292 77042337 -67240152 - MIR3 SINE MIR -12 196 152 225 337 66 60 chr12 77042505 77042671 -67239818 - MIR3 SINE MIR -41 167 1 912 289 162 14 chr12 77042838 77043034 -67239455 - L2 LINE L2 -535 2779 2613 928 169 6 12 chr12 77043034 77043200 -67239289 + FRAM SINE Alu 2 166 0 912 289 162 14 chr12 77043200 77043491 -67238998 - L2 LINE L2 -701 2613 2220 228 206 0 111 chr12 77043566 77043597 -67238892 + MER5B DNA MER1_type 1 23 -155 927 54 78 0 chr12 77043597 77043726 -67238763 - MER85 DNA T2_type 0 139 1 228 206 0 111 chr12 77043726 77043757 -67238732 + MER5B DNA MER1_type 23 56 -122 916 305 24 17 chr12 77043787 77044082 -67238407 - L2 LINE L2 0 3313 3017 594 176 5 0 chr12 77044082 77044202 -67238287 + L1 LINE L1 4070 4192 -1954 1539 181 38 14 chr12 77044254 77044541 -67237948 - AluJo SINE Alu -18 294 1 3542 232 102 45 chr12 77044563 77044798 -67237691 - L2 LINE L2 -895 2419 2199 5971 195 29 11 chr12 77044798 77046140 -67236349 + L1PA15 LINE L1 3958 5368 -797 1975 126 0 14 chr12 77046140 77046433 -67236056 - AluSg1 SINE Alu -20 289 1 5971 195 29 11 chr12 77046433 77047246 -67235243 + L1PA15 LINE L1 5368 6165 0 3542 232 102 45 chr12 77047246 77048251 -67234238 - L2 LINE L2 -1115 2199 1109 26 50 0 0 chr12 77048288 77048328 -67234161 + AT_rich Low_complexity Low_complexity 1 40 0 1910 166 0 0 chr12 77048549 77048845 -67233644 - AluJb SINE Alu -16 296 1 2087 132 0 0 chr12 77049105 77049392 -67233097 - AluSx SINE Alu -25 287 1 1311 231 89 0 chr12 77050507 77050810 -67231679 + MER119 DNA MER1_type 5 334 -249 683 169 28 42 chr12 77050819 77050961 -67231528 + MER119 DNA MER1_type 440 579 -4 2058 127 0 7 chr12 77051108 77051407 -67231082 + AluSx SINE Alu 1 297 -15 197 292 146 11 chr12 77052018 77052107 -67230382 - MIR SINE MIR -63 145 45 6083 24 0 0 chr12 77053194 77053909 -67228580 - L1PA3 LINE L1 -1106 5040 4326 7596 26 6 0 chr12 77053909 77055002 -67227487 + L1PA3 LINE L1 5058 6155 0 22 0 0 0 chr12 77055005 77055027 -67227462 + AT_rich Low_complexity Low_complexity 1 22 0 187 336 67 30 chr12 77056536 77056670 -67225819 + L2 LINE L2 1937 2075 -1239 834 90 0 16 chr12 77257825 77257947 -67024542 + LTR7 LTR ERV1 329 448 -2 2772 109 2 4 chr12 77257948 77258436 -67024053 - L1P5 LINE L1 -482 5669 5182 2748 78 92 5 chr12 77258436 77258848 -67023641 - LTR7 LTR ERV1 -2 448 1 2187 101 65 14 chr12 77258853 77259221 -67023268 - HERVH LTR ERV1 -5 7708 7322 1305 143 18 5 chr12 77259219 77259436 -67023053 - HERVH LTR ERV1 -1894 5819 5600 * 4223 141 23 0 chr12 77259437 77260083 -67022406 - HERVH LTR ERV1 -2564 5149 4489 5684 118 2 2 chr12 77260086 77260940 -67021549 - HERVH LTR ERV1 -3720 3993 3140 3659 108 0 18 chr12 77260919 77261843 -67020646 - HERVH LTR ERV1 -4718 2995 2041 * 9451 115 29 31 chr12 77261946 77263547 -67018942 - HERVH LTR ERV1 -6114 1599 1 2738 78 95 5 chr12 77263549 77263960 -67018529 - LTR7 LTR ERV1 -2 448 1 1525 233 24 2 chr12 77263961 77264377 -67018112 - L1 LINE L1 -958 5188 4764 * 2857 196 11 30 chr12 77264370 77264496 -67017993 - L1 LINE L1 -1642 4504 4377 1972 129 41 0 chr12 77264496 77264790 -67017699 - AluSx SINE Alu -6 306 1 2857 196 11 30 chr12 77264790 77264954 -67017535 - L1 LINE L1 -1769 4377 4211 6450 121 7 11 chr12 77264954 77265927 -67016562 - LTR5 LTR ERVK 0 969 1 2857 196 11 30 chr12 77265927 77266333 -67016156 - L1 LINE L1 -1935 4211 3820 2565 231 20 5 chr12 77266331 77266994 -67015495 - L1 LINE L1 -2861 3285 2613 * 628 177 0 9 chr12 77267008 77267121 -67015368 - AluSg/x SINE Alu -2 308 197 570 354 15 42 chr12 77267222 77267482 -67015007 + MER115 DNA AcHobo 197 449 -244 247 196 0 0 chr12 77267554 77267600 -67014889 + MLT1F LTR MaLR 497 542 0 356 211 141 51 chr12 77267612 77267768 -67014721 + MER115 DNA AcHobo 494 663 -30 202 323 141 18 chr12 77268088 77268331 -67014158 + L2 LINE L2 2736 2999 -273 23 33 0 0 chr12 77269871 77269901 -67012588 + AT_rich Low_complexity Low_complexity 1 30 0 235 240 180 20 chr12 77271559 77271659 -67010830 - MIR3 SINE MIR -51 157 42 2099 109 4 0 chr12 77271747 77272050 -67010439 + AluSg SINE Alu 6 309 0 206 316 0 0 chr12 77272607 77272664 -67009825 - L2 LINE L2 -11 3302 3246 790 360 58 15 chr12 77272756 77273236 -67009253 + L2 LINE L2 2813 3313 0 21 57 0 0 chr12 77273593 77273628 -67008861 + AT_rich Low_complexity Low_complexity 1 35 0 205 250 0 0 chr12 77274249 77274289 -67008200 - L2 LINE L2 -18 3254 3215 23 0 0 0 chr12 77274463 77274486 -67008003 + AT_rich Low_complexity Low_complexity 1 23 0 324 336 96 0 chr12 77275210 77275314 -67007175 + L2 LINE L2 2912 3025 -288 23 42 0 21 chr12 77276088 77276105 -67006384 + AT_rich Low_complexity Low_complexity 1 17 -30 2200 110 0 0 chr12 77276105 77276397 -67006092 - AluSg SINE Alu -18 292 1 23 42 0 21 chr12 77276397 77276427 -67006062 + AT_rich Low_complexity Low_complexity 17 47 0 580 307 52 29 chr12 77276637 77276946 -67005543 + L2 LINE L2 2997 3312 -1 190 326 129 34 chr12 77278131 77278278 -67004211 - MIR3 SINE MIR -31 177 17 439 263 190 0 chr12 77278947 77279126 -67003363 - L2 LINE L2 0 3313 3101 8456 23 3 0 chr12 77279137 77280483 -67002006 - L1PA3 LINE L1 -422 5733 4386 3353 49 0 0 chr12 77280483 77280891 -67001598 + L1PA3 LINE L1 5746 6155 0 23 33 0 0 chr12 77281111 77281141 -67001348 + AT_rich Low_complexity Low_complexity 1 30 0 720 348 44 27 chr12 77281618 77282040 -67000449 - L2 LINE L2 -264 3008 2586 647 289 82 49 chr12 77282503 77282842 -66999647 + LTR16A LTR ERVL 27 383 -67 1507 143 86 75 chr12 77282842 77283213 -66999276 + THE1C LTR MaLR 1 375 0 647 289 82 49 chr12 77283213 77283278 -66999211 + LTR16A LTR ERVL 383 444 -6 1715 29 0 0 chr12 77284021 77284227 -66998262 - L1PA4 LINE L1 0 6155 5950 24 0 0 0 chr12 77285967 77285991 -66996498 + AT_rich Low_complexity Low_complexity 1 24 0 733 270 81 45 chr12 77286727 77287171 -66995318 - L1MC/D LINE L1 -2029 5779 5320 24 0 0 0 chr12 77287927 77287951 -66994538 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 77288029 77288058 -66994431 + AT_rich Low_complexity Low_complexity 1 29 0 1979 154 0 13 chr12 77288489 77288794 -66993695 + AluSx SINE Alu 1 301 -11 430 297 16 27 chr12 77289130 77289284 -66993205 + MIR SINE MIR 16 167 -66 405 288 25 20 chr12 77289296 77289448 -66993041 + MLT1I LTR MaLR 52 207 -202 875 235 4 91 chr12 77289462 77289705 -66992784 - MER58A DNA MER1_type -1 223 2 294 309 152 39 chr12 77289850 77290054 -66992435 - MIR SINE MIR -16 246 20 21 0 0 0 chr12 77290216 77290237 -66992252 + AT_rich Low_complexity Low_complexity 1 21 0 1386 176 9 74 chr12 77291444 77291767 -66990722 - MER50 LTR ERV1 0 734 433 1276 79 25 113 chr12 77291771 77291874 -66990615 - MER50 LTR ERV1 -515 219 147 2248 99 0 0 chr12 77291874 77292176 -66990313 - AluSq SINE Alu -11 302 1 1276 79 25 113 chr12 77292176 77292312 -66990177 - MER50 LTR ERV1 -587 147 1 31 0 0 0 chr12 77292458 77292489 -66990000 + AT_rich Low_complexity Low_complexity 1 31 0 237 176 39 0 chr12 77292489 77292540 -66989949 - Alu SINE Alu -3 305 253 715 249 43 84 chr12 77292758 77293104 -66989385 + L1ME3A LINE L1 5539 5870 -300 26 0 0 0 chr12 77294168 77294194 -66988295 + AT_rich Low_complexity Low_complexity 1 26 0 247 331 14 0 chr12 77294612 77294751 -66987738 + (TA)n Simple_repeat Simple_repeat 1 141 0 285 248 48 57 chr12 77296064 77296169 -66986320 + L3 LINE CR1 441 544 -1033 346 331 73 28 chr12 77296509 77296757 -66985732 + MLT1J LTR MaLR 229 487 -24 242 343 75 8 chr12 77296896 77297030 -66985459 + L3 LINE CR1 626 768 -809 705 275 163 38 chr12 77297089 77297410 -66985079 - L2 LINE L2 -976 2338 1958 6089 157 52 6 chr12 77297410 77298586 -66983903 + Tigger3b DNA MER2_type 1 1230 -1 705 275 163 38 chr12 77298586 77298657 -66983832 - L2 LINE L2 -1356 1958 1897 367 309 63 0 chr12 77298657 77298783 -66983706 - MER94 DNA DNA 0 134 1 457 309 246 0 chr12 77298784 77299085 -66983404 - L2 LINE L2 -1410 1904 1530 1433 271 37 14 chr12 77299096 77299528 -66982961 + LTR40a LTR ERVL 7 448 -71 4405 146 41 8 chr12 77299545 77300324 -66982165 - L1PB4 LINE L1 -13 6143 5339 330 209 44 22 chr12 77300324 77300415 -66982074 + LTR40a LTR ERVL 427 519 0 24 67 0 0 chr12 77300453 77300498 -66981991 + AT_rich Low_complexity Low_complexity 1 45 0 458 325 89 26 chr12 77300870 77301218 -66981271 - L2 LINE L2 0 3313 2944 2368 159 31 25 chr12 77302811 77303296 -66979193 - L1MA3 LINE L1 -1 7723 7236 1552 97 8 13 chr12 77303296 77303533 -66978956 - MER11A LTR ERVK -1 1265 1030 3144 107 48 17 chr12 77303562 77304222 -66978267 - MER11A LTR ERVK -485 751 1 14529 181 24 14 chr12 77304222 77308998 -66973491 - L1MA3 LINE L1 -481 7242 2512 1908 144 43 27 chr12 77308998 77309367 -66973122 - THE1C LTR MaLR 0 375 1 14529 181 24 14 chr12 77309367 77309896 -66972593 - L1MA3 LINE L1 -5211 2512 1989 1916 136 87 35 chr12 77309896 77310242 -66972247 - THE1B LTR MaLR 0 364 1 7061 170 46 87 chr12 77310242 77311961 -66970528 - THE1B-int LTR MaLR 0 1651 3 2296 137 17 3 chr12 77311963 77312320 -66970169 - THE1B LTR MaLR 0 364 3 14529 181 24 14 chr12 77312320 77312470 -66970019 - L1MA3 LINE L1 -5734 1989 1842 186 43 0 0 chr12 77312470 77312493 -66969996 + (TC)n Simple_repeat Simple_repeat 2 24 0 14529 181 24 14 chr12 77312493 77313940 -66968549 - L1MA3 LINE L1 -5881 1842 242 184 250 67 125 chr12 77314373 77314477 -66968012 - MIR3 SINE MIR -1 207 110 25 0 0 0 chr12 77315564 77315589 -66966900 + AT_rich Low_complexity Low_complexity 1 25 0 648 153 12 112 chr12 77316005 77316175 -66966314 - MSTB-int LTR MaLR -1494 157 5 2324 171 50 0 chr12 77316179 77316583 -66965906 - MSTB LTR MaLR -2 424 1 3278 193 20 5 chr12 77316583 77317224 -66965265 + L1MA3 LINE L1 3577 4227 -1919 245 108 0 0 chr12 77317223 77317260 -66965229 + L1M1 LINE L1 5875 5911 -394 * 2474 201 5 12 chr12 77317268 77317933 -66964556 + L1MA3 LINE L1 4830 5487 -743 4472 138 14 9 chr12 77317934 77318700 -66963789 + L1MA3 LINE L1 5535 6304 -1 995 259 101 30 chr12 77318706 77318762 -66963727 + MLT1C LTR MaLR 108 159 -308 1704 162 13 10 chr12 77318762 77319065 -66963424 - AluJb SINE Alu -8 304 1 995 259 101 30 chr12 77319065 77319344 -66963145 + MLT1C LTR MaLR 159 467 0 568 263 10 145 chr12 77319372 77319676 -66962813 + MLT2F LTR ERVL 283 545 -118 285 29 0 0 chr12 77319717 77319751 -66962738 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr12 77319852 77319873 -66962616 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr12 77320140 77320172 -66962317 + AT_rich Low_complexity Low_complexity 1 32 0 307 404 38 4 chr12 77320736 77320976 -66961513 - MIR SINE MIR -14 248 1 2136 110 51 28 chr12 77322624 77322978 -66959511 - THE1B LTR MaLR 0 364 3 10694 118 9 4 chr12 77322987 77324551 -66957938 - THE1B-int LTR MaLR -8 1572 1 1909 142 54 26 chr12 77324553 77324905 -66957584 - THE1B LTR MaLR -2 362 1 583 319 66 0 chr12 77324949 77325190 -66957299 - MIR SINE MIR -3 259 3 556 284 25 98 chr12 77325261 77325750 -66956739 + L1M4 LINE L1 3007 3459 -2687 366 23 0 0 chr12 77326131 77326174 -66956315 + (TG)n Simple_repeat Simple_repeat 1 43 0 22 70 0 0 chr12 77326665 77326708 -66955781 + AT_rich Low_complexity Low_complexity 1 43 0 611 26 13 0 chr12 77327104 77327181 -66955308 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 227 56 56 0 chr12 77327732 77327768 -66954721 + CT-rich Low_complexity Low_complexity 3 40 0 28 0 0 0 chr12 77328114 77328142 -66954347 + AT_rich Low_complexity Low_complexity 1 28 0 23 78 0 0 chr12 77328207 77328258 -66954231 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr12 77329709 77329730 -66952759 + AT_rich Low_complexity Low_complexity 1 21 0 205 174 65 0 chr12 77331681 77331727 -66950762 - L2 LINE L2 0 3272 3224 21 0 0 0 chr12 77331765 77331786 -66950703 + AT_rich Low_complexity Low_complexity 1 21 0 1908 72 16 4 chr12 77333470 77333721 -66948768 + L1PA8 LINE L1 5899 6152 -20 2114 108 10 7 chr12 77333744 77334051 -66948438 + AluSq SINE Alu 1 308 -5 411 207 16 16 chr12 77334386 77334507 -66947982 + GA-rich Low_complexity Low_complexity 2 122 0 447 209 0 0 chr12 77336050 77336136 -66946353 + MER89 LTR ERV1 1 86 -473 * 1760 199 11 6 chr12 77336112 77336464 -66946025 + MER89 LTR ERV1 197 550 -9 2063 163 15 0 chr12 77336475 77336818 -66945671 - MER7A DNA MER2_type 0 346 1 293 214 10 0 chr12 77336893 77336996 -66945493 + (TA)n Simple_repeat Simple_repeat 2 105 0 234 259 172 0 chr12 77337064 77337180 -66945309 - L1ME LINE L1 -557 5605 5470 510 225 164 32 chr12 77337292 77337322 -66945167 - L1ME LINE L1 -1567 4579 4554 1586 200 55 19 chr12 77337322 77337737 -66944752 - MER95 LTR ERV 0 431 2 510 225 164 32 chr12 77337737 77337986 -66944503 - L1ME LINE L1 -1592 4554 4263 550 252 13 32 chr12 77338035 77338190 -66944299 - FRAM SINE Alu -3 173 22 1649 186 11 4 chr12 77338341 77338669 -66943820 - AluJb SINE Alu 0 331 2 206 276 65 6 chr12 77338866 77339036 -66943453 + (TTTA)n Simple_repeat Simple_repeat 1 180 0 24 77 0 0 chr12 77339334 77339386 -66943103 + AT_rich Low_complexity Low_complexity 1 52 0 247 321 9 0 chr12 77339545 77339654 -66942835 - L1ME LINE L1 -3611 2535 2426 270 245 31 71 chr12 77340100 77340198 -66942291 - MER5A DNA MER1_type -82 107 14 300 264 25 50 chr12 77341529 77341650 -66940839 + MLT1J LTR MaLR 393 510 -1 476 307 97 11 chr12 77342681 77342857 -66939632 + MER63A DNA MER1_type 2 192 -18 1516 295 64 21 chr12 77343822 77344677 -66937812 + L1ME1 LINE L1 807 1695 -4887 2876 232 84 31 chr12 77344735 77344787 -66937702 + L1ME1 LINE L1 5042 5090 -1871 1291 267 39 23 chr12 77344787 77345177 -66937312 + MSTD LTR MaLR 1 396 0 2876 232 84 31 chr12 77345177 77346516 -66935973 + L1ME1 LINE L1 5090 6520 -441 3385 111 21 56 chr12 77346516 77347083 -66935406 - LTR10B LTR ERV1 0 547 1 2876 232 84 31 chr12 77347083 77347135 -66935354 + L1ME1 LINE L1 6520 6568 -393 314 228 69 10 chr12 77347135 77347236 -66935253 + L1ME1 LINE L1 6837 6943 -18 23 0 0 0 chr12 77347250 77347273 -66935216 + AT_rich Low_complexity Low_complexity 1 23 0 2002 135 3 3 chr12 77347553 77347849 -66934640 + AluSx SINE Alu 1 296 -16 1213 265 47 23 chr12 77348462 77348571 -66933918 - LTR40a LTR ERVL 0 519 414 313 0 62 21 chr12 77348571 77348619 -66933870 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 1213 265 47 23 chr12 77348619 77348851 -66933638 - LTR40a LTR ERVL -105 414 170 2597 124 26 71 chr12 77348851 77349359 -66933130 - LTR29 LTR ERV1 0 622 138 284 341 56 0 chr12 77349335 77349461 -66933028 - MER34 LTR ERV1 -409 133 1 * 504 232 36 29 chr12 77349486 77349624 -66932865 - LTR40a LTR ERVL -380 139 1 231 230 106 44 chr12 77349766 77349879 -66932610 - MIR SINE MIR 0 262 143 1725 215 24 19 chr12 77350953 77351335 -66931154 + MSTD LTR MaLR 11 374 0 217 301 175 0 chr12 77352490 77352593 -66929896 + L2 LINE L2 3189 3309 -4 704 249 27 11 chr12 77353669 77353854 -66928635 + MIR SINE MIR 31 218 -44 342 319 34 8 chr12 77354929 77355048 -66927441 + L2 LINE L2 3192 3313 0 260 300 11 83 chr12 77355716 77355896 -66926593 - MIR SINE MIR -38 224 58 731 241 208 0 chr12 77356197 77356413 -66926076 - MIR SINE MIR 0 262 2 489 332 63 28 chr12 77356483 77356736 -66925753 + MIR SINE MIR 1 262 0 363 189 0 126 chr12 77357174 77357301 -66925188 - HERVH LTR ERV1 -6367 1346 1236 751 279 102 6 chr12 77357407 77357730 -66924759 - L1ME2 LINE L1 -22 6142 5789 2293 96 3 6 chr12 77357774 77358087 -66924402 - AluSp SINE Alu -1 312 1 2771 200 6 13 chr12 77358088 77358613 -66923876 + MER44D DNA MER2_type 19 594 -11 463 242 0 0 chr12 77358666 77358757 -66923732 - Tigger7 DNA MER2_type -1 2486 2396 760 219 115 15 chr12 77358768 77359028 -66923461 - L1ME2 LINE L1 -363 5801 5516 370 299 109 10 chr12 77359025 77359214 -66923275 - L1MDa LINE L1 -2677 4264 4095 * 567 40 0 0 chr12 77359214 77359288 -66923201 + (TC)n Simple_repeat Simple_repeat 1 74 0 234 0 0 0 chr12 77359287 77359313 -66923176 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 370 299 109 10 chr12 77359288 77359543 -66922946 - L1MDa LINE L1 -2846 4095 3801 914 273 61 36 chr12 77359591 77359983 -66922506 - LTR52 LTR ERVL -19 402 1 1496 219 82 62 chr12 77359989 77360670 -66921819 - L1MDa LINE L1 -3161 3780 3086 2032 216 34 55 chr12 77360757 77361430 -66921059 - L1MCb LINE L1 -4981 1583 925 235 253 72 12 chr12 77361436 77361519 -66920970 - L1MCa LINE L1 -5970 456 369 1593 247 65 119 chr12 77361533 77362497 -66919992 - L1MCb LINE L1 -5133 912 1 561 233 35 35 chr12 77362522 77362754 -66919735 - L1MDa LINE L1 -3905 3036 2805 487 270 67 19 chr12 77362809 77363076 -66919413 - L1MDa LINE L1 -4270 2852 2573 244 151 14 123 chr12 77363283 77363356 -66919133 - L1MDa LINE L1 -5430 992 928 351 328 57 53 chr12 77363429 77363728 -66918761 - L1MDa LINE L1 -5997 426 127 1700 166 0 17 chr12 77364597 77364886 -66917603 + AluJo SINE Alu 3 286 -26 4974 193 80 52 chr12 77364924 77366232 -66916257 - L1MC3 LINE L1 -30 7755 6412 216 124 50 74 chr12 77366328 77366449 -66916040 + (CTATA)n Simple_repeat Simple_repeat 4 121 0 216 242 50 0 chr12 77366458 77366557 -66915932 + (TAG)n Simple_repeat Simple_repeat 1 104 0 242 178 21 89 chr12 77367144 77367335 -66915154 + (CTATA)n Simple_repeat Simple_repeat 2 179 0 217 269 54 6 chr12 77367273 77367440 -66915049 + (TAA)n Simple_repeat Simple_repeat 1 175 0 * 349 262 48 0 chr12 77367467 77367635 -66914854 + (TAG)n Simple_repeat Simple_repeat 1 176 0 455 258 62 45 chr12 77367708 77367952 -66914537 + L1M4 LINE L1 2719 2966 -3180 579 188 7 14 chr12 77367960 77368104 -66914385 + GA-rich Low_complexity Low_complexity 2 144 0 1022 295 89 55 chr12 77368105 77368884 -66913605 - L1M4 LINE L1 -5728 814 10 6499 255 84 48 chr12 77368894 77372769 -66909720 - L1MCb LINE L1 -782 5782 1649 2941 146 8 0 chr12 77372781 77373260 -66909229 - L1PB2 LINE L1 -5 6146 5664 2475 80 32 69 chr12 77373260 77373725 -66908764 + LTR7 LTR ERV1 1 448 -2 2470 207 101 4 chr12 77373837 77374353 -66908136 + L1M1 LINE L1 153 718 -6847 1780 160 0 18 chr12 77374358 77374639 -66907850 - AluSx SINE Alu -36 276 1 6461 164 65 13 chr12 77374640 77377179 -66905310 - L1PBb LINE L1 -3532 2671 11 3538 178 8 0 chr12 77377157 77377791 -66904698 - L1PBa LINE L1 -5227 977 339 * 928 223 5 5 chr12 77377794 77377987 -66904502 - L1PBa LINE L1 -6669 194 2 3389 226 53 178 chr12 77377992 77378597 -66903892 - L1MCb LINE L1 -4883 1681 1002 6302 87 26 7 chr12 77378597 77379911 -66902578 - L1PA7 LINE L1 -7 6147 4823 3389 226 53 178 chr12 77379911 77381061 -66901428 - L1MCb LINE L1 -5562 1002 8 2193 116 0 0 chr12 77382477 77382771 -66899718 - AluSc SINE Alu -15 294 1 2150 148 95 5 chr12 77383074 77383465 -66899024 + MSTB LTR MaLR 1 426 0 28 0 0 0 chr12 77385101 77385129 -66897360 + AT_rich Low_complexity Low_complexity 1 28 0 865 261 67 58 chr12 77385135 77385686 -66896803 - L1MC4 LINE L1 -71 7971 7416 703 324 88 13 chr12 77386353 77386726 -66895763 + L2 LINE L2 1698 2098 -1216 269 411 30 13 chr12 77386925 77387161 -66895328 + L2 LINE L2 2845 3084 -188 * 386 347 0 20 chr12 77387145 77387295 -66895194 - MIR SINE MIR -30 232 86 1984 170 42 40 chr12 77387915 77388339 -66894150 + MSTC LTR MaLR 4 428 0 413 188 0 0 chr12 77388346 77388415 -66894074 + Tigger2 DNA MER2_type 1 69 -2649 265 200 0 0 chr12 77388413 77388463 -66894026 + Tigger2 DNA MER2_type 2280 2329 -389 * 238 280 0 0 chr12 77388462 77388512 -66893977 + Tigger2 DNA MER2_type 2658 2707 -11 * 307 341 125 22 chr12 77388515 77388715 -66893774 - MIR SINE MIR -44 218 4 450 294 54 40 chr12 77389475 77389692 -66892797 + MIR SINE MIR 8 225 -37 2056 123 13 7 chr12 77390686 77390994 -66891495 + AluSx SINE Alu 1 310 -2 1994 157 126 5 chr12 77391657 77392039 -66890450 + MSTA LTR MaLR 1 428 0 2145 106 0 0 chr12 77392200 77392483 -66890006 + AluSq SINE Alu 12 294 -19 326 287 49 55 chr12 77392865 77393029 -66889460 + MIR3 SINE MIR 59 187 -21 187 218 18 18 chr12 77393193 77393248 -66889241 + L2 LINE L2 1787 1841 -1473 1737 251 131 4 chr12 77393975 77394462 -66888027 + MLT1H LTR MaLR 1 549 0 773 245 59 20 chr12 77395871 77396075 -66886414 + MER20 DNA MER1_type 5 216 -3 4904 219 14 9 chr12 77396163 77397376 -66885113 - L1 LINE L1 -913 5513 4295 4853 143 12 20 chr12 77397380 77397895 -66884594 + L1PB1 LINE L1 5276 5783 -368 252 0 0 0 chr12 77397895 77397923 -66884566 + (TG)n Simple_repeat Simple_repeat 2 29 0 4853 143 12 20 chr12 77397923 77398287 -66884202 + L1PB1 LINE L1 5783 6148 -3 50 0 0 0 chr12 77398290 77398340 -66884149 + AT_rich Low_complexity Low_complexity 1 50 0 2010 140 45 25 chr12 77398354 77398710 -66883779 - THE1B LTR MaLR -1 363 1 396 361 45 12 chr12 77398715 77398959 -66883530 + MIR SINE MIR 11 262 0 4065 143 38 8 chr12 77399135 77399842 -66882647 - L1MC1 LINE L1 0 6333 5606 2412 224 25 34 chr12 77399842 77400879 -66881610 - L1MCa LINE L1 -3153 3273 2250 776 164 96 0 chr12 77400947 77401093 -66881396 - L1MCa LINE L1 -6246 180 21 219 217 0 0 chr12 77401149 77401209 -66881280 + (CA)n Simple_repeat Simple_repeat 1 60 0 212 69 0 0 chr12 77401768 77401797 -66880692 + L2 LINE L2 3285 3313 0 201 205 0 0 chr12 77402379 77402418 -66880071 + L2 LINE L2 3265 3303 -10 335 300 44 0 chr12 77402563 77402653 -66879836 - MER5A DNA MER1_type -83 106 13 1611 196 29 78 chr12 77402878 77403328 -66879161 + MSTB1 LTR MaLR 3 430 -2 201 147 0 0 chr12 77403439 77403473 -66879016 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 385 76 30 0 chr12 77403472 77403538 -66878951 + (GA)n Simple_repeat Simple_repeat 1 68 0 21 57 0 0 chr12 77404297 77404332 -66878157 + AT_rich Low_complexity Low_complexity 1 35 0 2283 35 0 7 chr12 77404332 77404615 -66877874 - L1PA4 LINE L1 -2 6153 5873 481 386 42 13 chr12 77405067 77405303 -66877186 + MIR SINE MIR 20 262 0 23 0 0 0 chr12 77405977 77406000 -66876489 + AT_rich Low_complexity Low_complexity 1 23 0 181 357 209 0 chr12 77406911 77407040 -66875449 - L3 LINE CR1 -97 1480 1325 231 288 180 0 chr12 77407106 77407217 -66875272 - L3 LINE CR1 -250 1327 1197 3349 155 34 11 chr12 77407326 77407952 -66874537 + L1MC1 LINE L1 5694 6333 0 633 313 65 27 chr12 77408197 77408600 -66873889 + L1MEd LINE L1 439 856 -5263 211 229 16 49 chr12 77408607 77408729 -66873760 + A-rich Low_complexity Low_complexity 1 118 0 360 308 21 21 chr12 77409129 77409272 -66873217 - MER5B DNA MER1_type -1 177 35 505 286 53 12 chr12 77410500 77410671 -66871818 + MIR SINE MIR 40 217 -45 23 0 0 0 chr12 77411011 77411034 -66871455 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr12 77411068 77411104 -66871385 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr12 77413936 77413958 -66868531 + AT_rich Low_complexity Low_complexity 1 22 0 754 234 32 130 chr12 77414283 77414622 -66867867 + MLT1A1 LTR MaLR 2 298 -67 11763 31 2 0 chr12 77414622 77416813 -66865676 - L1PA4 LINE L1 0 6155 3969 754 234 32 130 chr12 77416813 77416874 -66865615 + MLT1A1 LTR MaLR 298 363 -2 210 245 43 0 chr12 77417317 77417411 -66865078 + (TTATA)n Simple_repeat Simple_repeat 4 101 0 262 271 135 10 chr12 77418798 77418894 -66863595 - MIR SINE MIR -6 256 149 2236 108 0 0 chr12 77419615 77419920 -66862569 - AluSx SINE Alu -7 305 1 362 283 43 29 chr12 77419926 77420064 -66862425 - MIR SINE MIR -70 192 53 688 201 0 8 chr12 77420573 77420707 -66861782 + FLAM_A SINE Alu 1 133 0 505 270 50 19 chr12 77420917 77421076 -66861413 - MLT1G1 LTR MaLR 0 595 432 1809 137 20 41 chr12 77421087 77421431 -66861058 + MER1B DNA MER1_type 1 337 0 516 271 17 72 chr12 77421467 77421648 -66860841 - MLT1G3 LTR MaLR -324 206 36 2101 212 137 112 chr12 77421800 77422350 -66860139 + L1MC3 LINE L1 6543 7078 -707 409 157 0 56 chr12 77422350 77422439 -66860050 + MLT1F1 LTR MaLR 35 118 -449 2101 212 137 112 chr12 77422439 77422464 -66860025 + L1MC3 LINE L1 7078 7101 -684 2175 54 0 63 chr12 77422464 77422780 -66859709 + AluY SINE Alu 7 302 -9 2101 212 137 112 chr12 77422780 77423027 -66859462 + L1MC3 LINE L1 7101 7341 -444 300 111 0 0 chr12 77423027 77423072 -66859417 + (CA)n Simple_repeat Simple_repeat 1 45 0 2101 212 137 112 chr12 77423072 77423351 -66859138 + L1MC3 LINE L1 7341 7763 -22 294 289 25 25 chr12 77423892 77424012 -66858477 + MLT1J LTR MaLR 378 497 -14 835 181 105 38 chr12 77424012 77424222 -66858267 + MER67D LTR ERV1 1 224 -290 2920 224 35 23 chr12 77424227 77424998 -66857491 - L1 LINE L1 -1579 4567 3788 609 126 21 0 chr12 77425010 77425153 -66857336 + (TA)n Simple_repeat Simple_repeat 2 147 0 418 241 135 0 chr12 77425156 77425289 -66857200 - L1P LINE L1 -2368 3778 3628 3696 181 22 72 chr12 77425291 77426944 -66855545 + L1MB1 LINE L1 4590 6168 0 438 280 24 0 chr12 77426980 77427105 -66855384 + MER67D LTR ERV1 237 364 -150 270 138 21 128 chr12 77427131 77427225 -66855264 + MER67D LTR ERV1 431 514 0 438 311 102 29 chr12 77429389 77429633 -66852856 - MIR SINE MIR 0 262 1 1282 97 0 6 chr12 77430556 77430732 -66851757 + HERVL LTR ERVL 2160 2334 -3320 237 333 89 0 chr12 77430732 77430822 -66851667 - L1PA13 LINE L1 -5684 1890 1793 9297 195 8 4 chr12 77430826 77432427 -66850062 - L1PA13 LINE L1 -5973 1608 1 10157 236 30 11 chr12 77432431 77435112 -66847377 - L1PA13 LINE L1 -1656 5141 2411 2638 125 32 39 chr12 77435112 77435583 -66846906 + MLT2A1 LTR ERVL 1 474 -41 205 266 0 13 chr12 77435584 77435663 -66846826 + (TA)n Simple_repeat Simple_repeat 2 79 0 369 0 0 0 chr12 77435665 77435706 -66846783 + (TG)n Simple_repeat Simple_repeat 2 42 0 3265 297 25 52 chr12 77435718 77437025 -66845464 - L1PA13 LINE L1 -5308 1479 1 1257 229 66 120 chr12 77437103 77438336 -66844153 - L1MC5 LINE L1 -35 7926 6761 1041 338 21 31 chr12 77438460 77439010 -66843479 + L1M3a LINE L1 11 729 -5226 1079 356 38 12 chr12 77440188 77440822 -66841667 + L1MA7 LINE L1 345 880 -5075 731 174 0 0 chr12 77440822 77440943 -66841546 + FRAM SINE Alu 42 162 -14 1921 223 16 25 chr12 77440943 77441509 -66840980 + L1MA7 LINE L1 887 1447 -4518 * 5246 204 55 43 chr12 77441481 77443864 -66838625 + L1MA7 LINE L1 3778 6177 -2 456 223 152 65 chr12 77443921 77444105 -66838384 - MER2 DNA MER2_type 0 345 146 200 367 78 0 chr12 77444160 77444288 -66838201 - L3 LINE CR1 -184 1393 1256 8437 220 44 72 chr12 77445538 77446558 -66835931 + L1M4c LINE L1 21 1068 -5314 1435 208 3 7 chr12 77446558 77446846 -66835643 + AluJb SINE Alu 1 287 -25 8437 220 44 72 chr12 77446846 77447378 -66835111 + L1M4c LINE L1 1068 1613 -4769 312 217 0 17 chr12 77447378 77447438 -66835051 + Tigger5 DNA MER2_type 2265 2323 0 8437 220 44 72 chr12 77447438 77447539 -66834950 + L1M4c LINE L1 1613 1715 -4667 328 269 13 0 chr12 77447539 77447617 -66834872 + Tigger5 DNA MER2_type 2245 2323 0 8437 220 44 72 chr12 77447617 77448460 -66834029 + L1M4c LINE L1 1715 2580 -3802 2537 96 0 0 chr12 77448460 77448814 -66833675 + L1PA7 LINE L1 5801 6154 0 8437 220 44 72 chr12 77448814 77450315 -66832174 + L1M4c LINE L1 2580 4122 -2260 1935 132 63 17 chr12 77450315 77450663 -66831826 - THE1B LTR MaLR 0 364 1 10891 114 8 1 chr12 77450663 77452232 -66830257 - THE1B-int LTR MaLR 0 1580 1 2114 124 51 23 chr12 77452232 77452586 -66829903 - THE1B LTR MaLR 0 364 1 8437 220 44 72 chr12 77452586 77453248 -66829241 + L1M4c LINE L1 4119 4685 -1697 195 69 0 0 chr12 77453403 77453432 -66829057 + (TAAAAA)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr12 77453447 77453473 -66829016 + AT_rich Low_complexity Low_complexity 1 26 0 1785 204 85 14 chr12 77454323 77454759 -66827730 + MLT1C LTR MaLR 1 467 0 1433 124 201 34 chr12 77455093 77455456 -66827033 + MER4A-int LTR ERV1 227 686 -5912 1247 248 47 7 chr12 77455604 77455902 -66826587 + MER4A-int LTR ERV1 1852 2161 -4170 5882 111 75 11 chr12 77455952 77456884 -66825605 + MER4A-int LTR ERV1 189 1180 -5578 4935 113 179 154 chr12 77456885 77458771 -66823718 + MER4A-int LTR ERV1 1748 3681 -2917 6782 119 51 20 chr12 77458774 77459963 -66822526 + MER4A-int LTR ERV1 3841 5066 -1532 7222 38 16 1 chr12 77459964 77460974 -66821515 - L1PA4 LINE L1 -647 5508 4483 5484 36 0 0 chr12 77460974 77461623 -66820866 + L1PA4 LINE L1 5495 6146 -9 189 33 0 33 chr12 77461623 77461653 -66820836 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 4331 111 128 17 chr12 77461661 77462240 -66820249 + MER4A-int LTR ERV1 3500 4013 -2585 2033 131 7 13 chr12 77462240 77462546 -66819943 + AluSx SINE Alu 1 304 -8 4331 111 128 17 chr12 77462546 77462706 -66819783 + MER4A-int LTR ERV1 4013 5512 -1086 525 124 57 38 chr12 77462678 77462783 -66819706 + MER4A-int LTR ERV1 6490 6596 -2 * 623 113 10 10 chr12 77462790 77462887 -66819602 + MER4A LTR ERV1 2 98 -566 1825 121 3 77 chr12 77462887 77463260 -66819229 + MER4A LTR ERV1 261 664 0 256 171 0 82 chr12 77463308 77463375 -66819114 + MLT2B1 LTR ERVL 403 520 0 459 302 47 0 chr12 77463382 77463531 -66818958 - MIR SINE MIR -81 181 26 1087 182 19 10 chr12 77465447 77465656 -66816833 + MER39B LTR ERV1 438 648 -5 728 301 96 45 chr12 77465846 77466202 -66816287 + L2 LINE L2 2920 3293 -20 489 82 0 0 chr12 77466580 77466653 -66815836 - L1PA8 LINE L1 -3 6169 6097 1462 180 35 46 chr12 77466696 77467041 -66815448 + L1MC2 LINE L1 5992 6332 -12 345 266 133 62 chr12 77467155 77467463 -66815026 + L1M4 LINE L1 2942 3271 -2875 42415 35 23 1 chr12 77467783 77473604 -66808885 - L1PA2 LINE L1 -204 5951 1 290 136 49 0 chr12 77473929 77474010 -66808479 + (TA)n Simple_repeat Simple_repeat 1 85 0 250 295 55 75 chr12 77474342 77474596 -66807893 + MLT1K LTR MaLR 323 571 -17 466 395 59 19 chr12 77474605 77475131 -66807358 + L1M4 LINE L1 3768 4314 -1832 185 56 0 83 chr12 77476031 77476067 -66806422 + (TAAAA)n Simple_repeat Simple_repeat 1 33 0 459 0 0 0 chr12 77477085 77477136 -66805353 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 481 241 36 95 chr12 77477200 77477474 -66805015 + L1ME LINE L1 5561 5818 -303 798 297 123 14 chr12 77477665 77478022 -66804467 + L2 LINE L2 2461 2856 -458 247 301 266 7 chr12 77478065 77478351 -66804138 + L2 LINE L2 2954 3313 0 2273 70 0 29 chr12 77479032 77479344 -66803145 - AluY SINE Alu -7 304 2 695 264 121 87 chr12 77479929 77480460 -66802029 - MLT1H LTR MaLR 0 549 1 1389 212 70 0 chr12 77481501 77481803 -66800686 + MLT1C LTR MaLR 1 323 -144 603 187 239 0 chr12 77481803 77481958 -66800531 + MLT2C2 LTR ERVL 217 408 -56 679 103 0 10 chr12 77481994 77482091 -66800398 + MER4A LTR ERV1 1 96 -568 1617 130 8 107 chr12 77482093 77482419 -66800070 + MER4A LTR ERV1 261 604 -60 2335 77 17 3 chr12 77482419 77482716 -66799773 - AluSq SINE Alu -12 301 1 1617 130 8 107 chr12 77482716 77482772 -66799717 + MER4A LTR ERV1 604 664 0 1654 91 142 73 chr12 77482775 77483183 -66799306 + MER4A-int LTR ERV1 1 436 -6162 459 0 0 0 chr12 77483938 77483989 -66798500 + (CA)n Simple_repeat Simple_repeat 1 51 0 571 236 146 6 chr12 77483996 77484161 -66798328 + MER5A DNA MER1_type 1 188 -1 2232 100 3 7 chr12 77484784 77485085 -66797404 + AluSc SINE Alu 1 300 -9 5506 188 4 8 chr12 77485528 77486610 -66795879 - L1 LINE L1 -1566 5999 4923 2206 173 51 2 chr12 77486633 77487061 -66795428 + L1P LINE L1 4591 5039 -1107 9976 191 69 21 chr12 77487063 77488724 -66793765 - L1 LINE L1 -5453 2112 338 2316 105 0 0 chr12 77488724 77489028 -66793461 - AluSg SINE Alu -6 304 1 9976 191 69 21 chr12 77489028 77489367 -66793122 - L1 LINE L1 -7227 338 17 279 54 0 0 chr12 77490354 77490391 -66792098 + (TC)n Simple_repeat Simple_repeat 2 38 0 276 188 25 12 chr12 77490642 77490722 -66791767 + (TA)n Simple_repeat Simple_repeat 2 82 0 2268 129 48 25 chr12 77490742 77491138 -66791351 - L1PA11 LINE L1 -3 6171 5767 14208 206 48 18 chr12 77491154 77491770 -66790719 - L1P LINE L1 -1779 4367 3771 234 0 0 0 chr12 77491770 77491796 -66790693 + (TA)n Simple_repeat Simple_repeat 1 26 0 14208 206 48 18 chr12 77491796 77494571 -66787918 - L1P LINE L1 -2375 3771 875 1684 173 26 55 chr12 77494929 77495346 -66787143 + L1MA9 LINE L1 5908 6312 0 249 389 6 29 chr12 77495892 77496067 -66786422 + MER5A DNA MER1_type 17 187 -2 250 279 23 124 chr12 77498309 77498574 -66783915 - MLT1H LTR MaLR -232 317 80 185 164 0 18 chr12 77498667 77498722 -66783767 + GA-rich Low_complexity Low_complexity 1 54 0 426 361 156 27 chr12 77498829 77499452 -66783037 - L2 LINE L2 -695 2619 1917 22 0 0 0 chr12 77499466 77499488 -66783001 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr12 77499939 77499969 -66782520 + AT_rich Low_complexity Low_complexity 1 30 0 41447 40 2 3 chr12 77501158 77507071 -66775418 - L1PA3 LINE L1 -1 6154 253 544 401 26 36 chr12 77508717 77509456 -66773033 + L2 LINE L2 2282 3010 -262 1412 164 34 19 chr12 77509482 77509750 -66772739 - L1PA16 LINE L1 -9 6157 5886 2107 140 46 8 chr12 77509830 77510181 -66772308 - THE1B LTR MaLR 0 364 1 282 286 66 0 chr12 77510218 77510309 -66772180 + L2 LINE L2 3215 3311 -2 372 332 72 64 chr12 77510532 77510878 -66771611 + L2 LINE L2 2446 2794 -520 237 372 115 13 chr12 77511115 77511271 -66771218 + MIR SINE MIR 6 177 -85 236 319 43 26 chr12 77511316 77511432 -66771057 + MIR SINE MIR 131 248 -14 21 0 0 0 chr12 77512425 77512446 -66770043 + AT_rich Low_complexity Low_complexity 1 21 0 321 298 53 91 chr12 77513740 77514025 -66768464 - MLT1J LTR MaLR -212 299 26 1952 34 8 0 chr12 77515245 77515481 -66767008 - L1P LINE L1 -1356 4790 4553 * 3380 50 0 2 chr12 77515476 77515913 -66766576 + L1P LINE L1 4798 5233 -913 1413 140 5 5 chr12 77515913 77516150 -66766339 + AluSp SINE Alu 71 307 0 1895 206 5 34 chr12 77518749 77519157 -66763332 - MSTD LTR MaLR 0 396 1 21 36 0 0 chr12 77519240 77519268 -66763221 + AT_rich Low_complexity Low_complexity 1 28 0 5006 211 36 9 chr12 77519370 77519877 -66762612 - L1MA9 LINE L1 0 6312 5820 387 0 0 0 chr12 77519877 77519920 -66762569 + (TG)n Simple_repeat Simple_repeat 2 44 0 5006 211 36 9 chr12 77519920 77521461 -66761028 - L1MA9 LINE L1 -492 5820 4204 3342 188 36 33 chr12 77521689 77522925 -66759564 + L1MB3 LINE L1 4447 5704 -479 1737 227 6 6 chr12 77522925 77523290 -66759199 - MLT1A1 LTR MaLR 0 365 1 3342 188 36 33 chr12 77523290 77523485 -66759004 + L1MB3 LINE L1 5704 5897 -286 55 86 0 0 chr12 77523497 77523636 -66758853 + AT_rich Low_complexity Low_complexity 1 139 0 22 80 0 0 chr12 77523727 77523777 -66758712 + AT_rich Low_complexity Low_complexity 1 50 0 49 43 0 0 chr12 77523866 77523936 -66758553 + AT_rich Low_complexity Low_complexity 1 70 0 1108 134 84 6 chr12 77524922 77525101 -66757388 + THE1B LTR MaLR 1 193 -171 * 1384 173 54 23 chr12 77525098 77525358 -66757131 + THE1B LTR MaLR 89 356 -8 8526 113 7 1 chr12 77525366 77526563 -66755926 + THE1B-int LTR MaLR 1 1204 -376 904 175 62 0 chr12 77526564 77526724 -66755765 + THE1B LTR MaLR 195 364 0 1964 150 0 3 chr12 77527154 77527454 -66755035 - AluSq SINE Alu -14 299 1 21 0 0 0 chr12 77527965 77527986 -66754503 + AT_rich Low_complexity Low_complexity 1 21 0 244 233 0 17 chr12 77528159 77528219 -66754270 + GA-rich Low_complexity Low_complexity 2 60 0 21 36 0 0 chr12 77528376 77528404 -66754085 + AT_rich Low_complexity Low_complexity 1 28 0 510 301 53 8 chr12 77531873 77532006 -66750483 + MER45A DNA AcHobo 1 139 -39 538 51 13 13 chr12 77532007 77532086 -66750403 + (TTCC)n Simple_repeat Simple_repeat 1 79 0 922 168 39 0 chr12 77532086 77532241 -66750248 - AluJb SINE Alu -15 297 137 2198 106 0 0 chr12 77532602 77532925 -66749564 + AluSg SINE Alu 1 323 0 797 340 82 75 chr12 77533198 77534658 -66747831 + L2 LINE L2 676 2145 -1169 1826 114 61 0 chr12 77534687 77534951 -66747538 + AluSp SINE Alu 2 281 -32 194 0 70 47 chr12 77534953 77534996 -66747493 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 391 337 47 21 chr12 77535204 77535394 -66747095 + MLT1J2 LTR MaLR 247 441 -9 275 394 85 0 chr12 77535401 77535566 -66746923 + L2 LINE L2 2791 2969 -345 225 272 37 118 chr12 77535621 77535757 -66746732 + LTR16A1 LTR ERVL 2 126 -331 272 184 138 83 chr12 77535785 77535894 -66746595 + LTR16A1 LTR ERVL 310 424 -33 5611 179 11 12 chr12 77536048 77537210 -66745279 - L1MA4 LINE L1 -6 6294 5130 955 204 30 4 chr12 77537203 77537434 -66745055 + L1MA4 LINE L1 4898 5134 -1012 * 339 226 21 21 chr12 77539847 77539940 -66742549 + L1MC4 LINE L1 6613 6705 -1337 367 125 42 10 chr12 77539940 77540036 -66742453 + (TA)n Simple_repeat Simple_repeat 2 100 0 1827 119 36 11 chr12 77540036 77540314 -66742175 - AluSc SINE Alu -24 285 1 213 286 68 38 chr12 77540640 77540773 -66741716 - MIR SINE MIR -44 218 82 284 289 118 20 chr12 77541203 77541355 -66741134 - MIR SINE MIR 0 262 96 29 28 0 0 chr12 77544840 77544876 -66737613 + AT_rich Low_complexity Low_complexity 1 36 0 28 61 0 0 chr12 77544912 77544961 -66737528 + AT_rich Low_complexity Low_complexity 1 49 0 275 243 252 9 chr12 77546078 77546189 -66736300 - MER5A DNA MER1_type 0 189 52 606 326 42 17 chr12 77548393 77548629 -66733860 - MIR SINE MIR -15 247 6 382 288 127 5 chr12 77549625 77549830 -66732659 - MER2 DNA MER2_type -1 344 115 24 67 0 0 chr12 77550326 77550371 -66732118 + AT_rich Low_complexity Low_complexity 1 45 0 28 71 0 0 chr12 77550750 77550806 -66731683 + AT_rich Low_complexity Low_complexity 1 56 0 2542 138 39 7 chr12 77550845 77551286 -66731203 - L1PA14 LINE L1 -1 6160 5706 22 35 0 0 chr12 77551642 77551671 -66730818 + AT_rich Low_complexity Low_complexity 1 29 0 220 140 80 20 chr12 77554406 77554456 -66728033 - MIR SINE MIR -71 191 139 1752 229 106 25 chr12 77554480 77555074 -66727415 - LTR48B LTR ERV1 0 644 3 21 0 0 0 chr12 77555999 77556020 -66726469 + AT_rich Low_complexity Low_complexity 1 21 0 224 320 32 48 chr12 77556713 77556838 -66725651 + L2 LINE L2 2808 2930 -342 472 205 134 0 chr12 77557117 77557244 -66725245 - MER103 DNA DNA -20 146 3 25 0 0 0 chr12 77557620 77557645 -66724844 + AT_rich Low_complexity Low_complexity 1 25 0 362 174 92 41 chr12 77558557 77558655 -66723834 - MIR SINE MIR -48 214 112 241 250 0 0 chr12 77559120 77559172 -66723317 - L2 LINE L2 -6 3266 3215 1981 164 36 0 chr12 77559578 77559914 -66722575 + MER7A DNA MER2_type 1 346 0 204 250 0 0 chr12 77561046 77561094 -66721395 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 180 308 0 19 chr12 77561144 77561196 -66721293 - L3 LINE CR1 -2 1575 1525 21 0 0 75 chr12 77562526 77562566 -66719923 + AT_rich Low_complexity Low_complexity 1 37 0 980 171 75 0 chr12 77562799 77562986 -66719503 + MLT2B1 LTR ERVL 1 201 -319 1416 144 5 0 chr12 77562994 77563216 -66719273 + L1PA15 LINE L1 5563 5785 -380 1708 189 3 0 chr12 77563221 77563518 -66718971 + AluJb SINE Alu 5 302 -10 356 155 14 0 chr12 77563518 77563589 -66718900 + GA-rich Low_complexity Low_complexity 1 72 0 2224 158 26 3 chr12 77563592 77563978 -66718511 + L1PA15 LINE L1 5769 6163 -2 672 269 71 11 chr12 77564017 77564200 -66718289 + MLT2B1 LTR ERVL 262 460 -60 324 0 0 0 chr12 77564210 77564246 -66718243 + (CA)n Simple_repeat Simple_repeat 2 37 0 2494 59 0 3 chr12 77565314 77565491 -66716998 - AluY SINE Alu -5 306 129 243 0 0 0 chr12 77565491 77565518 -66716971 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2494 59 0 3 chr12 77565518 77565647 -66716842 - AluY SINE Alu -182 129 1 232 108 40 27 chr12 77565843 77565917 -66716572 + (TA)n Simple_repeat Simple_repeat 1 75 0 22 0 0 0 chr12 77566477 77566499 -66715990 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr12 77566548 77566572 -66715917 + AT_rich Low_complexity Low_complexity 1 24 0 275 328 61 61 chr12 77567620 77567818 -66714671 + L3 LINE CR1 884 1081 -496 1034 201 22 65 chr12 77568187 77568332 -66714157 + MER20 DNA MER1_type 1 134 -85 2836 149 58 14 chr12 77568332 77568835 -66713654 - MER1A DNA MER1_type 0 527 3 1034 201 22 65 chr12 77568835 77568918 -66713571 + MER20 DNA MER1_type 134 219 0 576 294 104 0 chr12 77569631 77569832 -66712657 - MIR SINE MIR -30 232 11 313 277 10 124 chr12 77569906 77570108 -66712381 - MIR SINE MIR -50 212 34 1739 81 8 8 chr12 77570195 77570443 -66712046 - L1PA13 LINE L1 -3 6160 5913 23 54 0 0 chr12 77570761 77570798 -66711691 + AT_rich Low_complexity Low_complexity 1 37 0 32 75 0 0 chr12 77571067 77571134 -66711355 + AT_rich Low_complexity Low_complexity 1 67 0 241 283 92 50 chr12 77571297 77571417 -66711072 - L2 LINE L2 0 3272 3148 40 49 0 0 chr12 77571640 77571701 -66710788 + AT_rich Low_complexity Low_complexity 1 61 0 5820 53 23 0 chr12 77571701 77572436 -66710053 - L1PA7 LINE L1 -13 6141 5390 3859 109 11 0 chr12 77572435 77573004 -66709485 + L1PA7 LINE L1 4829 5403 -743 * 931 45 58 13 chr12 77574737 77575049 -66707440 + (TCTA)n Simple_repeat Simple_repeat 1 325 0 196 277 151 10 chr12 77577199 77577376 -66705113 + L2 LINE L2 3046 3313 0 243 137 39 0 chr12 77577461 77577512 -66704977 + MADE1 DNA Mariner 28 80 0 5156 241 79 30 chr12 77578179 77580678 -66701811 - L1 LINE L1 -2078 5487 2862 26 82 0 0 chr12 77580843 77580904 -66701585 + AT_rich Low_complexity Low_complexity 1 61 0 31 58 0 0 chr12 77581257 77581309 -66701180 + AT_rich Low_complexity Low_complexity 1 52 0 263 208 0 28 chr12 77581510 77581582 -66700907 - LTR67 LTR ERVL -31 526 457 4813 67 0 2 chr12 77582346 77583158 -66699331 - L1PA7 LINE L1 -286 5868 5058 1678 86 55 4 chr12 77583158 77583412 -66699077 + L1PA7 LINE L1 5882 6150 -4 2134 130 3 7 chr12 77583703 77584011 -66698478 - AluSp SINE Alu -6 307 1 880 140 0 0 chr12 77584034 77584170 -66698319 - L1MA1 LINE L1 0 6302 6167 960 68 34 0 chr12 77584181 77584327 -66698162 + L1MA1 LINE L1 6020 6170 -132 235 279 78 65 chr12 77584485 77584639 -66697850 - LTR67 LTR ERVL -14 543 388 218 276 40 40 chr12 77584892 77584968 -66697521 - MIR SINE MIR -112 150 75 24 0 0 0 chr12 77585860 77585884 -66696605 + AT_rich Low_complexity Low_complexity 1 24 0 194 344 0 31 chr12 77585997 77586093 -66696396 + MIR SINE MIR 169 261 -1 28 48 0 0 chr12 77586460 77586502 -66695987 + AT_rich Low_complexity Low_complexity 1 42 0 392 340 73 19 chr12 77587434 77588015 -66694474 - L1ME3A LINE L1 -244 5908 5277 247 218 30 98 chr12 77588032 77588165 -66694324 - L1MB8 LINE L1 0 6178 6055 * 325 321 136 24 chr12 77588149 77588816 -66693673 - L1ME3A LINE L1 -3255 2874 2133 352 276 27 81 chr12 77589178 77589363 -66693126 - L1ME3A LINE L1 -4946 1173 999 1596 170 33 45 chr12 77589542 77589872 -66692617 - MLT2B3 LTR ERVL 0 554 229 912 210 14 41 chr12 77589932 77589980 -66692509 - MLT2D LTR ERVL -340 213 165 912 193 12 0 chr12 77589980 77590141 -66692348 - Ricksha DNA DNA -1528 518 356 487 292 89 35 chr12 77590305 77590620 -66691869 - L1ME3A LINE L1 -220 5950 5619 955 309 54 3 chr12 77590655 77590972 -66691517 - LTR40b LTR ERVL 0 462 130 307 188 0 16 chr12 77591017 77591081 -66691408 + L1MC4 LINE L1 6641 6703 -1339 1515 279 177 45 chr12 77591304 77592646 -66689843 - HAL1 LINE L1 -154 2353 835 1935 115 55 33 chr12 77592768 77593132 -66689357 - THE1C LTR MaLR -3 372 1 379 241 41 53 chr12 77593172 77593438 -66689051 + L1ME3A LINE L1 2959 3221 -2925 318 269 17 34 chr12 77593536 77593655 -66688834 + L1ME3A LINE L1 3369 3485 -2661 484 342 73 16 chr12 77593669 77594119 -66688370 + L1ME3A LINE L1 3723 4198 -1948 * 1706 290 96 14 chr12 77594104 77595087 -66687402 + L1MEc LINE L1 358 1271 -4946 317 272 0 0 chr12 77595093 77595185 -66687304 + L1ME3A LINE L1 5678 5769 -401 1806 257 66 16 chr12 77595188 77595754 -66686735 + L1MA5 LINE L1 1 573 -6636 390 257 46 7 chr12 77595767 77595919 -66686570 + L1MEc LINE L1 1054 1211 -5185 2545 252 23 43 chr12 77596006 77596857 -66685632 + L1MA5 LINE L1 996 2271 -4938 1403 205 24 0 chr12 77596858 77597112 -66685377 + AluSx SINE Alu 1 260 -52 3963 215 41 11 chr12 77597123 77598088 -66684401 + L1MA5 LINE L1 2265 3279 -3929 189 25 25 50 chr12 77598088 77598128 -66684361 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3963 215 41 11 chr12 77598128 77598412 -66684077 + L1MA5 LINE L1 3279 3553 -3655 7528 191 122 11 chr12 77598412 77599972 -66682517 - MER52A LTR ERV1 0 1755 23 6540 197 33 8 chr12 77599976 77602612 -66679877 + L1MA5 LINE L1 3549 7360 -2 626 331 25 7 chr12 77602636 77602920 -66679569 + L1ME3A LINE L1 5773 6061 -109 2767 0 0 117 chr12 77602925 77603028 -66679461 + L1PB4 LINE L1 5246 5394 -1824 2767 173 9 56 chr12 77603028 77603668 -66678821 + L1PB4 LINE L1 6608 7217 -1 2767 0 0 117 chr12 77603668 77604729 -66677760 + L1PB4 LINE L1 5394 7217 -1 4014 68 0 2 chr12 77604765 77605294 -66677195 + L1PA7 LINE L1 5625 6152 -2 2762 71 14 3 chr12 77605325 77605692 -66676797 - L1P3 LINE L1 -390 5764 5394 1250 188 154 31 chr12 77605736 77606061 -66676428 - MLT1A1 LTR MaLR 0 365 1 1145 206 12 23 chr12 77606129 77606148 -66676341 - MLT2D LTR ERVL -22 375 357 276 100 0 0 chr12 77606148 77606188 -66676301 + (TG)n Simple_repeat Simple_repeat 1 40 0 1145 206 12 23 chr12 77606188 77606492 -66675997 - MLT2D LTR ERVL -40 357 1 1039 309 78 25 chr12 77606504 77607103 -66675386 + L1ME3A LINE L1 5530 6160 -10 1516 101 0 5 chr12 77607626 77607845 -66674644 + L1PA13 LINE L1 5943 6160 -3 219 279 93 0 chr12 77608266 77608352 -66674137 + L2 LINE L2 33 126 -3188 215 226 0 19 chr12 77608401 77608454 -66674035 + L2 LINE L2 3258 3309 -4 3216 333 92 45 chr12 77608460 77609433 -66673056 + L2 LINE L2 131 1057 -2257 297 0 0 0 chr12 77609433 77609466 -66673023 + (CA)n Simple_repeat Simple_repeat 2 34 0 3216 333 92 45 chr12 77609466 77609634 -66672855 + L2 LINE L2 1057 1216 -2098 324 70 0 0 chr12 77609634 77609677 -66672812 + MADE1 DNA Mariner 34 76 -4 3216 333 92 45 chr12 77609677 77610817 -66671672 + L2 LINE L2 1216 2563 -751 212 240 20 0 chr12 77610863 77610913 -66671576 + L2 LINE L2 3019 3069 -244 1844 159 41 32 chr12 77610989 77611329 -66671160 - THE1B LTR MaLR -21 343 1 9510 173 40 1 chr12 77611329 77612850 -66669639 - THE1B-int LTR MaLR 0 1580 1 2072 130 39 33 chr12 77612850 77613212 -66669277 - THE1B LTR MaLR 0 364 1 330 345 42 18 chr12 77613214 77613379 -66669110 + L2 LINE L2 3144 3312 -1 290 193 88 105 chr12 77613509 77613623 -66668866 + L1MC/D LINE L1 5580 5691 -2117 867 145 45 50 chr12 77613756 77613935 -66668554 - L1MC1 LINE L1 -11 6322 6145 2404 206 10 51 chr12 77613943 77614779 -66667710 + L1MA8 LINE L1 3342 4150 -3415 2678 133 21 23 chr12 77614779 77615214 -66667275 + MLT2A2 LTR ERVL 1 434 -19 284 125 39 58 chr12 77615227 77615331 -66667158 + (TA)n Simple_repeat Simple_repeat 1 102 0 301 103 0 118 chr12 77615331 77615399 -66667090 + MLT2A2 LTR ERVL 394 453 0 4089 102 2 0 chr12 77615399 77615958 -66666531 + HERVL-A2-A2 LTR ERVL 1 560 -5094 * 33511 98 9 2 chr12 77615953 77620524 -66661965 + HERVL-A2-A2 LTR ERVL 1044 5645 -9 3078 104 20 20 chr12 77620533 77620986 -66661503 + MLT2A2 LTR ERVL 1 453 0 11235 185 44 12 chr12 77620986 77624433 -66658056 + L1MA8 LINE L1 4143 7705 -5 2044 107 6 56 chr12 77624558 77624877 -66657612 - AluSx SINE Alu -9 303 1 22 0 0 0 chr12 77626088 77626110 -66656379 + AT_rich Low_complexity Low_complexity 1 22 0 210 360 9 63 chr12 77626751 77626862 -66655627 + L2 LINE L2 3132 3236 -36 424 273 0 72 chr12 77626866 77627005 -66655484 - L2 LINE L2 -23 3290 3162 335 342 13 26 chr12 77627399 77627551 -66654938 + L2 LINE L2 3163 3312 -1 519 321 128 31 chr12 77628006 77628333 -66654156 - LTR16A LTR ERVL 0 450 92 2694 156 0 21 chr12 77628567 77629004 -66653485 - MSTC LTR MaLR 0 428 1 16501 187 27 116 chr12 77629480 77634422 -66648067 + L1PA12 LINE L1 1 5026 -2558 231 36 0 0 chr12 77634422 77634450 -66648039 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 16501 187 27 116 chr12 77634450 77636113 -66646376 + L1PA12 LINE L1 5026 6835 -749 777 159 7 7 chr12 77636309 77636477 -66646012 + L1PA11 LINE L1 5240 5407 -743 4860 121 13 12 chr12 77636537 77637305 -66645184 + L1PA11 LINE L1 5406 6174 0 834 232 34 0 chr12 77637648 77637825 -66644664 + MER5A DNA MER1_type 1 183 -6 693 169 28 7 chr12 77638025 77638167 -66644322 - LTR24B LTR ERV1 -7 569 425 2816 161 43 29 chr12 77638167 77638769 -66643720 - MER4B LTR ERV1 0 779 1 1737 147 91 50 chr12 77638769 77639197 -66643292 - LTR24B LTR ERV1 -148 428 1 330 200 0 0 chr12 77639553 77639613 -66642876 - Alu SINE Alu -6 296 237 489 146 117 0 chr12 77640837 77640940 -66641549 - L1MA7 LINE L1 -11 6280 6166 272 300 38 49 chr12 77641152 77641382 -66641107 + MIR SINE MIR 36 262 0 1843 228 23 60 chr12 77643452 77643580 -66638909 - MLT1D LTR MaLR -3 502 371 2569 160 14 5 chr12 77643580 77644004 -66638485 + MSTA LTR MaLR 1 428 0 1843 228 23 60 chr12 77644004 77644392 -66638097 - MLT1D LTR MaLR -134 371 5 21 82 0 0 chr12 77644636 77644685 -66637804 + AT_rich Low_complexity Low_complexity 1 49 0 1061 216 97 55 chr12 77644872 77645293 -66637196 + HsTC2 DNA Tc2 1283 1897 -1 22 56 0 0 chr12 77645916 77645952 -66636537 + AT_rich Low_complexity Low_complexity 1 36 0 3845 234 38 12 chr12 77646112 77647875 -66634614 - L1MA9 LINE L1 -30 6282 4465 227 204 0 0 chr12 77647875 77647924 -66634565 + T-rich Low_complexity Low_complexity 1 49 0 624 220 18 10 chr12 77647958 77648236 -66634253 - L1PA2 LINE L1 -18 6137 5859 186 103 0 0 chr12 77648481 77648510 -66633979 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2440 241 24 19 chr12 77648518 77649236 -66633253 + L1MC3 LINE L1 7056 7776 -9 26 74 0 0 chr12 77649253 77649307 -66633182 + AT_rich Low_complexity Low_complexity 1 54 0 2170 200 18 8 chr12 77649329 77649828 -66632661 + L1 LINE L1 4266 4769 -1377 15684 38 2 0 chr12 77649928 77652156 -66630333 + L1P1 LINE L1 3489 5722 -433 10588 23 1 0 chr12 77652257 77653539 -66628950 + L1P LINE L1 2183 3465 -2681 35 0 0 0 chr12 77654400 77654435 -66628054 + AT_rich Low_complexity Low_complexity 1 35 0 3755 258 103 15 chr12 77654508 77655646 -66626843 + L1PA13 LINE L1 2 1239 -5548 294 158 11 32 chr12 77655987 77656082 -66626407 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 33 43 0 0 chr12 77656117 77656164 -66626325 + AT_rich Low_complexity Low_complexity 1 47 0 204 67 0 0 chr12 77656295 77656325 -66626164 + (TG)n Simple_repeat Simple_repeat 2 31 0 570 253 45 119 chr12 77656458 77656770 -66625719 - LTR16A1 LTR ERVL 0 457 169 531 217 58 0 chr12 77657941 77658041 -66624448 - MLT1B LTR MaLR -16 374 264 2267 135 16 16 chr12 77658041 77658405 -66624084 - THE1B LTR MaLR 0 364 1 531 217 58 0 chr12 77658405 77658424 -66624065 - MLT1B LTR MaLR -126 264 248 3793 156 9 11 chr12 77658424 77659093 -66623396 - THE1B-int LTR MaLR -20 1560 893 21 36 0 0 chr12 77659922 77659950 -66622539 + AT_rich Low_complexity Low_complexity 1 28 0 1460 259 153 5 chr12 77660035 77660706 -66621783 + L1ME3 LINE L1 5392 6162 0 235 301 27 0 chr12 77660747 77660820 -66621669 - MIR SINE MIR -28 234 160 517 152 19 0 chr12 77660826 77660931 -66621558 + CT-rich Low_complexity Low_complexity 3 109 0 2117 109 0 19 chr12 77660937 77661250 -66621239 - AluSc SINE Alu -2 307 1 24 53 0 0 chr12 77661584 77661622 -66620867 + AT_rich Low_complexity Low_complexity 1 38 0 284 328 38 23 chr12 77661726 77661857 -66620632 + MIR SINE MIR 67 199 -63 21 0 0 0 chr12 77662590 77662611 -66619878 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 77663208 77663232 -66619257 + AT_rich Low_complexity Low_complexity 1 24 0 29 32 0 48 chr12 77664106 77664168 -66618321 + AT_rich Low_complexity Low_complexity 1 59 0 24 53 0 0 chr12 77665373 77665411 -66617078 + AT_rich Low_complexity Low_complexity 1 38 0 240 381 64 33 chr12 77666489 77666818 -66615671 + L2 LINE L2 2746 3097 -175 426 39 0 0 chr12 77666974 77667026 -66615463 + (CA)n Simple_repeat Simple_repeat 1 52 0 225 0 0 0 chr12 77667025 77667050 -66615439 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 224 337 12 0 chr12 77667112 77667195 -66615294 + MIR SINE MIR 85 168 -94 28 71 0 0 chr12 77667790 77667846 -66614643 + AT_rich Low_complexity Low_complexity 1 56 0 221 200 60 0 chr12 77668746 77668796 -66613693 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 28 86 0 0 chr12 77668927 77668997 -66613492 + AT_rich Low_complexity Low_complexity 1 70 0 261 0 0 0 chr12 77669015 77669044 -66613445 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr12 77669197 77669227 -66613262 + AT_rich Low_complexity Low_complexity 1 30 0 243 88 0 0 chr12 77670027 77670061 -66612428 + (TG)n Simple_repeat Simple_repeat 2 35 0 249 83 0 0 chr12 77670174 77670210 -66612279 + (TA)n Simple_repeat Simple_repeat 2 37 0 24 53 0 0 chr12 77670433 77670471 -66612018 + AT_rich Low_complexity Low_complexity 1 38 0 13785 65 77 6 chr12 77670583 77672554 -66609935 + L1P LINE L1 2 2112 -4034 34463 27 1 1 chr12 77672656 77677576 -66604913 + L1HS LINE L1 1234 6152 -3 1998 88 20 3 chr12 77677706 77678000 -66604489 - AluY SINE Alu -12 299 1 8944 32 9 0 chr12 77679993 77681844 -66600645 + L1PA3 LINE L1 4290 6150 -5 183 200 0 0 chr12 77682726 77682761 -66599728 - MIR SINE MIR -16 246 212 342 334 25 41 chr12 77682772 77683097 -66599392 - L1ME4a LINE L1 -255 5866 5548 262 318 0 35 chr12 77683391 77683476 -66599013 + L2 LINE L2 3186 3267 -5 286 314 7 7 chr12 77683491 77683628 -66598861 + (TA)n Simple_repeat Simple_repeat 2 138 0 1993 237 66 68 chr12 77683909 77684031 -66598458 + L1ME2 LINE L1 5387 5508 -656 2196 100 10 3 chr12 77684031 77684342 -66598147 + AluSp SINE Alu 1 313 0 2117 109 0 16 chr12 77684342 77684654 -66597835 + AluY SINE Alu 1 307 -4 1993 237 66 68 chr12 77684654 77685161 -66597328 + L1ME2 LINE L1 5507 6018 -146 682 224 101 85 chr12 77685161 77685586 -66596903 + MER63B DNA MER1_type 1 432 -4 1993 237 66 68 chr12 77685586 77685723 -66596766 + L1ME2 LINE L1 6018 6154 -10 419 209 90 0 chr12 77685868 77686072 -66596417 - L1MB4 LINE L1 -2 6178 5915 1575 181 41 18 chr12 77686104 77686446 -66596043 - MER39 LTR ERV1 0 707 358 330 206 154 29 chr12 77686490 77686626 -66595863 - MER39B LTR ERV1 -493 160 8 3379 55 0 0 chr12 77686641 77687063 -66595426 - L1PA5 LINE L1 0 6154 5733 4969 55 0 3 chr12 77687063 77687703 -66594786 + L1P LINE L1 4546 5183 -963 236 324 9 28 chr12 77687703 77687811 -66594678 - L2 LINE L2 -15 3298 3193 21 0 0 0 chr12 77689274 77689295 -66593194 + AT_rich Low_complexity Low_complexity 1 21 0 786 273 63 66 chr12 77690191 77690586 -66591903 - LTR16A1 LTR ERVL -4 453 60 1418 155 33 97 chr12 77690644 77691030 -66591459 - L1MB3 LINE L1 0 6183 5866 207 139 0 0 chr12 77692291 77692327 -66590162 + (TC)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr12 77692359 77692381 -66590108 + AT_rich Low_complexity Low_complexity 1 22 0 275 359 30 23 chr12 77693268 77693399 -66589090 + L2 LINE L2 1777 1908 -1406 666 286 83 79 chr12 77693956 77694452 -66588037 - MLT1G LTR MaLR -8 582 85 279 193 34 0 chr12 77694610 77694698 -66587791 + CT-rich Low_complexity Low_complexity 3 93 0 186 356 68 58 chr12 77694707 77694898 -66587591 + L2 LINE L2 2611 2803 -511 249 391 42 26 chr12 77695040 77695229 -66587260 - MER91A DNA MER1_type 0 196 5 328 338 48 0 chr12 77695270 77695415 -66587074 + MIR SINE MIR 109 260 -2 4242 18 2 0 chr12 77695863 77696356 -66586133 + L1PA2 LINE L1 5660 6153 -2 237 150 17 50 chr12 77696868 77696928 -66585561 - LTR33 LTR ERVL -8 513 456 2108 175 35 87 chr12 77696944 77697482 -66585007 + MLT2B2 LTR ERVL 4 513 -2 528 339 37 18 chr12 77697580 77697798 -66584691 - LTR33 LTR ERVL -299 222 1 21 71 0 0 chr12 77697942 77697984 -66584505 + AT_rich Low_complexity Low_complexity 1 42 0 226 183 17 50 chr12 77698394 77698454 -66584035 + LTR33 LTR ERVL 456 513 -8 242 163 0 0 chr12 77698541 77698590 -66583899 - L1MC4 LINE L1 -1339 6703 6655 22 0 0 0 chr12 77698706 77698728 -66583761 + AT_rich Low_complexity Low_complexity 1 22 0 1952 264 80 91 chr12 77698756 77699901 -66582588 + L1MCb LINE L1 27 1158 -4887 1453 223 28 56 chr12 77699905 77700601 -66581888 + L1MCb LINE L1 1236 2317 -4248 921 174 166 86 chr12 77700749 77701122 -66581367 + LTR49 LTR ERV1 144 546 -49 27 62 0 0 chr12 77701309 77701357 -66581132 + AT_rich Low_complexity Low_complexity 1 48 0 632 258 78 7 chr12 77701383 77701562 -66580927 - MIR SINE MIR -17 245 55 1559 176 0 11 chr12 77701670 77701970 -66580519 + AluJo SINE Alu 13 309 0 21 0 0 0 chr12 77702086 77702107 -66580382 + AT_rich Low_complexity Low_complexity 1 21 0 441 196 45 0 chr12 77702113 77702225 -66580264 + L1M4 LINE L1 5186 5302 -844 547 100 12 0 chr12 77702225 77702305 -66580184 + LTR24 LTR ERV1 1 81 -386 * 1267 128 26 31 chr12 77702301 77702570 -66579919 - THE1C LTR MaLR -102 262 1 1329 211 21 25 chr12 77704440 77704720 -66577769 - AluJo SINE Alu -33 279 1 2528 60 0 0 chr12 77705226 77705562 -66576927 - L1P LINE L1 -743 5403 5068 6000 49 0 3 chr12 77705585 77706320 -66576169 + L1PA6 LINE L1 5407 6139 -15 290 113 0 19 chr12 77706320 77706373 -66576116 + (TA)n Simple_repeat Simple_repeat 1 52 0 24 53 0 0 chr12 77707169 77707207 -66575282 + AT_rich Low_complexity Low_complexity 1 38 0 1334 221 95 52 chr12 77707515 77707998 -66574491 - MLT1D LTR MaLR 0 505 2 227 244 26 13 chr12 77709051 77709129 -66573360 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 444 304 222 43 chr12 77709987 77710401 -66572088 - L2 LINE L2 -6 3307 2820 21 0 0 0 chr12 77710585 77710606 -66571883 + AT_rich Low_complexity Low_complexity 1 21 0 211 339 160 28 chr12 77712337 77712662 -66569827 - L3 LINE CR1 -32 1545 1178 1997 106 13 30 chr12 77713206 77713508 -66568981 - AluSx SINE Alu -15 297 1 28 29 0 0 chr12 77713881 77713916 -66568573 + AT_rich Low_complexity Low_complexity 1 35 0 277 402 61 11 chr12 77714609 77714870 -66567619 - L2 LINE L2 -340 2974 2701 1328 196 37 0 chr12 77715122 77715367 -66567122 - AluJb SINE Alu -11 301 48 570 148 0 0 chr12 77715621 77715722 -66566767 + (TGGA)n Simple_repeat Simple_repeat 1 101 0 194 125 0 25 chr12 77717911 77717951 -66564538 + (TA)n Simple_repeat Simple_repeat 1 39 0 2127 124 3 3 chr12 77718488 77718795 -66563694 - AluSg SINE Alu -3 307 1 1163 266 89 41 chr12 77718797 77719462 -66563027 - L1M4 LINE L1 -989 5157 4461 712 158 5 141 chr12 77719463 77719647 -66562842 - AluSg/x SINE Alu -17 295 137 209 135 27 0 chr12 77719912 77719949 -66562540 + T-rich Low_complexity Low_complexity 3 40 0 286 389 31 31 chr12 77719955 77720413 -66562076 - L1ME LINE L1 -5610 460 3 1792 142 14 3 chr12 77721060 77721355 -66561134 - AluSx SINE Alu -3 309 12 284 331 39 15 chr12 77721525 77721655 -66560834 - MLT1K LTR MaLR -198 390 258 254 213 0 12 chr12 77722057 77722137 -66560352 + A-rich Low_complexity Low_complexity 3 81 0 507 307 93 4 chr12 77722921 77723146 -66559343 - MIR SINE MIR -15 247 3 22 0 0 0 chr12 77724105 77724127 -66558362 + AT_rich Low_complexity Low_complexity 1 22 0 208 250 0 0 chr12 77724161 77724209 -66558280 + CT-rich Low_complexity Low_complexity 1 48 0 1925 249 27 21 chr12 77724275 77724833 -66557656 - L1ME1 LINE L1 -139 6027 5467 528 130 0 8 chr12 77724872 77725089 -66557400 + AluJb SINE Alu 13 302 -10 2257 260 52 37 chr12 77725145 77726289 -66556200 - L1ME1 LINE L1 -1101 5045 3884 688 354 13 4 chr12 77726609 77726838 -66555651 + MIR SINE MIR 8 238 -24 247 358 21 11 chr12 77726866 77726961 -66555528 + MIR SINE MIR 78 173 -89 1780 169 3 31 chr12 77727031 77727351 -66555138 - AluJb SINE Alu -1 311 1 563 45 45 0 chr12 77727371 77727460 -66555029 - L1PA8 LINE L1 0 6172 6080 1479 275 37 18 chr12 77727979 77728488 -66554001 - LTR40a LTR ERVL 0 519 1 234 0 0 0 chr12 77728488 77728514 -66553975 + (CA)n Simple_repeat Simple_repeat 2 27 0 191 64 64 21 chr12 77728586 77728633 -66553856 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 261 333 3 45 chr12 77729352 77729507 -66552982 - MLT1J LTR MaLR -92 502 289 265 393 23 12 chr12 77729941 77730114 -66552375 + L2 LINE L2 1487 1661 -1653 1368 178 0 0 chr12 77730158 77730383 -66552106 + AluSg/x SINE Alu 82 306 -6 1979 290 95 13 chr12 77730452 77731176 -66551313 + L2 LINE L2 1799 2593 -721 2521 158 29 5 chr12 77731176 77731594 -66550895 + MSTA LTR MaLR 1 428 0 1979 290 95 13 chr12 77731594 77731649 -66550840 + L2 LINE L2 2593 2642 -672 1264 209 63 8 chr12 77731655 77732018 -66550471 - MER66A LTR ERV1 -5 473 15 537 310 58 65 chr12 77732053 77732527 -66549962 + L2 LINE L2 2673 3152 -161 2173 92 10 13 chr12 77732527 77732830 -66549659 - AluY SINE Alu -9 302 1 537 310 58 65 chr12 77732830 77732880 -66549609 + L2 LINE L2 3152 3201 -112 259 289 141 22 chr12 77733167 77733302 -66549187 + MIR SINE MIR 111 261 -1 982 208 0 5 chr12 77733338 77733535 -66548954 - MER3 DNA MER1_type -13 196 1 2437 94 3 34 chr12 77733666 77734048 -66548441 - L1PB1 LINE L1 0 6151 5782 207 0 0 0 chr12 77734048 77734071 -66548418 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 987 173 0 0 chr12 77734070 77734323 -66548166 + (TA)n Simple_repeat Simple_repeat 1 254 0 1436 180 10 10 chr12 77734335 77734641 -66547848 - L1PB1 LINE L1 -404 5747 5442 * 4269 208 4 41 chr12 77734623 77735775 -66546714 + L1 LINE L1 4149 5258 -888 582 216 26 0 chr12 77735770 77735886 -66546603 - L1P3 LINE L1 -5754 121 3 * 385 359 26 30 chr12 77735904 77736138 -66546351 - MLT1K LTR MaLR -183 405 173 195 186 0 0 chr12 77736227 77736270 -66546219 + (TATG)n Simple_repeat Simple_repeat 2 44 0 309 293 20 10 chr12 77736340 77736439 -66546050 + L2 LINE L2 3214 3313 0 7550 106 4 1 chr12 77736925 77737965 -66544524 - THE1B-int LTR MaLR -537 1043 1 2069 147 48 17 chr12 77737965 77738318 -66544171 - THE1B LTR MaLR 0 364 1 890 220 57 39 chr12 77738328 77738594 -66543895 - MLT1A2 LTR MaLR -123 273 1 1814 301 39 7 chr12 77738602 77739189 -66543300 + MER69 DNA AcHobo 2 607 -1919 691 257 24 50 chr12 77739206 77739544 -66542945 + MER69 DNA AcHobo 2129 2457 -69 321 362 77 30 chr12 77739627 77740094 -66542395 + L1M4 LINE L1 4514 5002 -1144 251 333 48 27 chr12 77741038 77741185 -66541304 + L2 LINE L2 2934 3083 -189 250 302 23 0 chr12 77741189 77741275 -66541214 - MER115 DNA AcHobo 0 693 606 2090 109 7 17 chr12 77741282 77741584 -66540905 + AluSc SINE Alu 1 299 -10 818 155 26 16 chr12 77741656 77741849 -66540640 + L1 LINE L1 4276 4470 -1676 7178 78 134 6 chr12 77741850 77742945 -66539544 + L1P LINE L1 1 1235 -4911 357 24 0 0 chr12 77743316 77743358 -66539131 + (TA)n Simple_repeat Simple_repeat 1 42 0 1433 194 0 74 chr12 77743782 77744118 -66538371 - MER67D LTR ERV1 -203 311 1 384 326 170 0 chr12 77744271 77744418 -66538071 + MER5A DNA MER1_type 18 189 0 2300 176 21 19 chr12 77745377 77745804 -66536685 - MSTC LTR MaLR 0 428 1 183 139 0 0 chr12 77745966 77746002 -66536487 + (CTA)n Simple_repeat Simple_repeat 1 36 0 654 317 91 35 chr12 77746560 77746879 -66535610 + MLT1J LTR MaLR 1 337 -174 261 0 0 0 chr12 77747034 77747063 -66535426 + (TG)n Simple_repeat Simple_repeat 2 30 0 216 182 0 0 chr12 77747067 77747111 -66535378 + (TA)n Simple_repeat Simple_repeat 1 44 0 377 312 50 28 chr12 77747409 77747550 -66534939 + MIR SINE MIR 59 202 -60 21 0 0 0 chr12 77747717 77747738 -66534751 + AT_rich Low_complexity Low_complexity 1 21 0 193 227 114 0 chr12 77747748 77747792 -66534697 - L2 LINE L2 0 3272 3224 13133 127 48 44 chr12 77748100 77750746 -66531743 - L1PA8A LINE L1 -391 6055 3403 2081 117 0 4 chr12 77750746 77751078 -66531411 - AluSg SINE Alu 0 331 1 13133 127 48 44 chr12 77751078 77751266 -66531223 - L1PA8A LINE L1 -3043 3403 3217 2006 211 12 19 chr12 77751266 77751879 -66530610 - L1PA8A LINE L1 -4939 936 119 1010 101 0 28 chr12 77751887 77752065 -66530424 - L1P LINE L1 -725 5426 5254 21 36 0 0 chr12 77752306 77752334 -66530155 + AT_rich Low_complexity Low_complexity 1 28 0 6482 91 14 6 chr12 77752658 77754211 -66528278 - L1PA8 LINE L1 -21 6151 4591 452 259 140 0 chr12 77755164 77755307 -66527182 + MER69 DNA AcHobo 8 170 -2356 405 235 43 9 chr12 77755303 77755418 -66527071 + MER69 DNA AcHobo 2404 2522 -4 * 2223 56 20 39 chr12 77755871 77756176 -66526313 - AluY SINE Alu -12 299 1 531 252 19 8 chr12 77756261 77756400 -66526089 - MLT1A2 LTR MaLR -40 465 197 41 78 0 0 chr12 77756857 77756947 -66525542 + AT_rich Low_complexity Low_complexity 1 90 0 23 33 0 0 chr12 77757744 77757774 -66524715 + AT_rich Low_complexity Low_complexity 1 30 0 976 160 0 46 chr12 77758386 77758561 -66523928 + AluSg/x SINE Alu 137 303 -9 22100 113 10 14 chr12 77760476 77762026 -66520463 + L1P LINE L1 1060 2615 -3531 4689 170 17 41 chr12 77762026 77763004 -66519485 + LTR5 LTR ERVK 1 955 -14 22100 113 10 14 chr12 77763004 77764941 -66517548 + L1P LINE L1 2615 4533 -1613 6581 68 15 5 chr12 77765048 77766720 -66515769 + L1PA7 LINE L1 4504 6151 -3 1105 112 7 0 chr12 77767386 77767564 -66514925 + AluSg/x SINE Alu 130 308 0 21 36 0 0 chr12 77769356 77769384 -66513105 + AT_rich Low_complexity Low_complexity 1 28 0 2383 186 5 54 chr12 77770230 77771086 -66511403 - L1M3 LINE L1 -409 5759 4951 297 333 24 0 chr12 77771110 77771233 -66511256 + MIR SINE MIR 137 262 0 186 191 0 0 chr12 77771571 77771613 -66510876 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 2009 61 0 15 chr12 77772264 77772528 -66509961 - L1PA8 LINE L1 -2 6170 5911 2253 58 3 62 chr12 77772644 77772969 -66509520 + AluY SINE Alu 1 306 -5 239 291 93 0 chr12 77773078 77773164 -66509325 - L2 LINE L2 -1 3312 3219 1043 301 79 32 chr12 77773277 77773746 -66508743 + LTR16C LTR ERVL 1 491 0 24 53 0 0 chr12 77773810 77773848 -66508641 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr12 77774573 77774609 -66507880 + AT_rich Low_complexity Low_complexity 1 36 0 510 198 151 57 chr12 77774837 77775029 -66507460 - MER63A DNA MER1_type 0 210 1 3788 160 18 9 chr12 77775231 77775900 -66506589 - L1PA16 LINE L1 -3 6866 6192 825 93 0 0 chr12 77775916 77776024 -66506465 - AluY SINE Alu -12 299 192 12625 220 22 21 chr12 77776053 77776880 -66505609 - L1PA16 LINE L1 -678 6191 5366 2305 93 0 7 chr12 77776880 77777181 -66505308 - AluY SINE Alu -12 299 1 12625 220 22 21 chr12 77777181 77777432 -66505057 - L1PA16 LINE L1 -1503 5366 5117 369 0 0 0 chr12 77777432 77777473 -66505016 + (TG)n Simple_repeat Simple_repeat 2 42 0 12625 220 22 21 chr12 77777473 77782691 -66499798 - L1PA16 LINE L1 -1752 5117 1 22 0 0 0 chr12 77782842 77782864 -66499625 + AT_rich Low_complexity Low_complexity 1 22 0 283 263 0 81 chr12 77782954 77783053 -66499436 + MIR3 SINE MIR 114 204 -4 264 239 0 98 chr12 77783176 77783268 -66499221 + MER39B-int LTR ERV1 6043 6125 -206 3322 154 16 24 chr12 77783390 77783997 -66498492 + MER39B LTR ERV1 1 528 -57 2193 79 0 4 chr12 77784289 77784566 -66497923 - AluY SINE Alu -3 308 33 1591 191 23 0 chr12 77785131 77785430 -66497059 - AluJo SINE Alu -6 306 1 557 290 84 9 chr12 77786018 77786232 -66496257 - MER97b DNA MER1_type? -823 230 1 263 364 37 64 chr12 77786479 77786776 -66495713 - L2 LINE L2 -448 2866 2578 1852 328 87 36 chr12 77786886 77787117 -66495372 + L2 LINE L2 386 604 -2710 2311 72 3 35 chr12 77787117 77787436 -66495053 - AluY SINE Alu -2 309 1 1852 328 87 36 chr12 77787436 77788337 -66494152 + L2 LINE L2 604 1575 -1739 1227 239 47 44 chr12 77788463 77788988 -66493501 - MLT1E LTR MaLR -9 645 138 324 48 0 0 chr12 77789041 77789083 -66493406 + (CA)n Simple_repeat Simple_repeat 1 42 0 252 143 0 0 chr12 77789083 77789125 -66493364 + (GA)n Simple_repeat Simple_repeat 1 42 0 231 289 0 13 chr12 77789132 77789208 -66493281 - MLT1E LTR MaLR -579 75 1 672 346 99 12 chr12 77789397 77789822 -66492667 - L2 LINE L2 -847 2467 2006 271 243 43 14 chr12 77790821 77790891 -66491598 + MER94 DNA DNA 1 72 -62 241 191 32 48 chr12 77790919 77790982 -66491507 - MLT1H LTR MaLR 0 549 488 3935 61 16 0 chr12 77792000 77792507 -66489982 + L1PA7 LINE L1 5640 6154 0 181 343 14 14 chr12 77793030 77793100 -66489389 + L2 LINE L2 2093 2162 -1152 4929 183 18 13 chr12 77793553 77794789 -66487700 + L1PA13 LINE L1 1103 2331 -4483 1687 175 3 30 chr12 77794789 77795092 -66487397 - AluJb SINE Alu -17 295 1 4929 183 18 13 chr12 77795092 77799260 -66483229 + L1PA13 LINE L1 2331 6760 -54 305 54 125 0 chr12 77799311 77799367 -66483122 + L1PA15 LINE L1 6103 6165 0 293 351 29 35 chr12 77799576 77799750 -66482739 - MER5A DNA MER1_type -1 188 16 4656 89 44 0 chr12 77799890 77800522 -66481967 + PABL_A LTR ERV1 1 660 0 358 341 50 11 chr12 77801429 77801608 -66480881 - MLT1J LTR MaLR -313 198 13 225 303 0 0 chr12 77802815 77802881 -66479608 + MIR3 SINE MIR 135 200 -8 23 54 0 0 chr12 77803860 77803897 -66478592 + AT_rich Low_complexity Low_complexity 1 37 0 757 314 103 60 chr12 77803913 77804693 -66477796 + L1MEc LINE L1 919 1652 -4732 494 304 71 36 chr12 77804931 77805296 -66477193 + L1MCc LINE L1 31 408 -6015 2132 150 7 63 chr12 77805914 77806341 -66476148 - MER57A LTR ERV1 0 403 1 191 270 48 16 chr12 77806407 77806470 -66476019 - MIR SINE MIR -62 146 82 22 70 0 0 chr12 77807014 77807057 -66475432 + AT_rich Low_complexity Low_complexity 1 43 0 776 230 46 37 chr12 77807848 77808065 -66474424 + MIR SINE MIR 40 258 -4 4992 186 24 4 chr12 77808875 77810303 -66472186 + L1PA16 LINE L1 4713 6166 0 246 32 0 0 chr12 77810569 77810600 -66471889 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1555 159 0 8 chr12 77810611 77810856 -66471633 - AluSx SINE Alu -48 264 22 589 217 0 33 chr12 77811135 77811255 -66471234 + MLT1D LTR MaLR 1 116 -389 15319 78 8 2 chr12 77811255 77814127 -66468362 - L1PA6 LINE L1 -3 6151 3269 1087 88 6 0 chr12 77814127 77814287 -66468202 + L1P LINE L1 2247 2407 -3739 817 254 92 59 chr12 77814287 77814676 -66467813 + MLT1D LTR MaLR 104 505 0 2419 231 86 116 chr12 77814782 77815943 -66466546 + L1M4 LINE L1 1 1126 -5416 198 332 97 60 chr12 77816176 77816444 -66466045 + L2 LINE L2 2597 2874 -440 836 327 80 14 chr12 77816676 77817089 -66465400 + LTR16B LTR ERVL 12 451 -13 1593 191 85 83 chr12 77817324 77817843 -66464646 + MLT2B1 LTR ERVL 1 520 0 22 0 0 0 chr12 77818759 77818781 -66463708 + AT_rich Low_complexity Low_complexity 1 22 0 668 80 10 0 chr12 77818981 77819081 -66463408 + (GGAA)n Simple_repeat Simple_repeat 4 104 0 25 31 0 0 chr12 77819759 77819791 -66462698 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr12 77819970 77819994 -66462495 + AT_rich Low_complexity Low_complexity 1 24 0 695 257 92 92 chr12 77821155 77821642 -66460847 + L1ME LINE L1 5263 5749 -421 1038 225 117 23 chr12 77821642 77821824 -66460665 - MLT1A2 LTR MaLR 0 374 210 294 29 0 0 chr12 77821824 77821859 -66460630 + (CA)n Simple_repeat Simple_repeat 2 36 0 1038 225 117 23 chr12 77821859 77822018 -66460471 - MLT1A2 LTR MaLR -164 210 1 22 0 0 0 chr12 77824873 77824895 -66457594 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 77826346 77826377 -66456112 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr12 77827455 77827491 -66454998 + AT_rich Low_complexity Low_complexity 1 36 0 1675 140 14 34 chr12 77828730 77829022 -66453467 + THE1B LTR MaLR 1 286 -78 6889 117 58 59 chr12 77829022 77830208 -66452281 - THE1B-int LTR MaLR -395 1185 1 2360 122 34 3 chr12 77830208 77830561 -66451928 - THE1B LTR MaLR 0 364 1 7717 158 8 17 chr12 77830562 77831317 -66451172 + L1P LINE L1 3501 4239 -1907 2376 90 0 0 chr12 77831317 77831617 -66450872 + AluSx SINE Alu 1 300 -12 7717 158 8 17 chr12 77831617 77832245 -66450244 + L1P LINE L1 4239 4871 -1275 29 60 0 0 chr12 77832316 77832366 -66450123 + AT_rich Low_complexity Low_complexity 1 50 0 472 282 106 19 chr12 77833536 77833793 -66448696 + MLT1G LTR MaLR 228 588 -2 26 74 0 0 chr12 77834041 77834095 -66448394 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr12 77834931 77834953 -66447536 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 77835406 77835427 -66447062 + AT_rich Low_complexity Low_complexity 1 21 0 1404 217 39 25 chr12 77837161 77837521 -66444968 + MLT1A1 LTR MaLR 1 365 0 28 48 0 0 chr12 77837649 77837691 -66444798 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr12 77837766 77837796 -66444693 + AT_rich Low_complexity Low_complexity 1 30 0 1824 176 39 25 chr12 77837853 77838212 -66444277 + THE1B LTR MaLR 1 364 0 10590 110 27 1 chr12 77838212 77839752 -66442737 + THE1B-int LTR MaLR 1 1580 0 1784 171 47 44 chr12 77839752 77840115 -66442374 + THE1B LTR MaLR 1 364 0 1790 299 39 19 chr12 77892433 77893028 -66389461 + MLT1E2 LTR MaLR 20 626 0 478 327 38 11 chr12 77893031 77893297 -66389192 + L1M3d LINE L1 3 275 -5616 * 2664 269 30 16 chr12 77893270 77894362 -66388127 + L1M3de LINE L1 2 1144 -5509 185 323 21 10 chr12 77894610 77894706 -66387783 + MIR SINE MIR 110 206 -56 1154 168 37 109 chr12 77895616 77895792 -66386697 - AluSx SINE Alu -2 300 156 225 0 0 0 chr12 77895792 77895817 -66386672 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1154 168 37 109 chr12 77895817 77895962 -66386527 - AluSx SINE Alu -146 156 2 1989 139 20 0 chr12 77895965 77896268 -66386221 - AluSp SINE Alu -4 309 1 186 43 0 0 chr12 77896593 77896616 -66385873 + (T)n Simple_repeat Simple_repeat 1 23 0 701 147 0 0 chr12 77896629 77896738 -66385751 + MSTA LTR MaLR 10 118 -310 1867 144 50 25 chr12 77896738 77897100 -66385389 + THE1C LTR MaLR 1 371 -4 2503 230 15 0 chr12 77897113 77897718 -66384771 - L1 LINE L1 -842 5304 4691 903 48 111 8 chr12 77898420 77898546 -66383943 + MER85 DNA T2_type 1 139 0 230 296 0 0 chr12 77898795 77898849 -66383640 + MIR3 SINE MIR 105 158 -50 21 0 0 0 chr12 77899983 77900004 -66382485 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr12 77900313 77900351 -66382138 + AT_rich Low_complexity Low_complexity 1 38 0 2817 7 0 0 chr12 77900526 77900835 -66381654 + AluYa5 SINE Alu 1 309 -2 837 263 16 0 chr12 77901095 77901285 -66381204 - MLT1A2 LTR MaLR 0 374 182 241 328 90 0 chr12 77902843 77902965 -66379524 + L2 LINE L2 3177 3309 -4 381 404 78 21 chr12 77903042 77903463 -66379026 - L2 LINE L2 -19 3253 2809 898 274 78 70 chr12 77903521 77904273 -66378216 - MER20B DNA MER1_type 0 783 26 1443 215 16 3 chr12 77905223 77905544 -66376945 - L1MB5 LINE L1 -8 6166 5842 1714 284 40 10 chr12 77905545 77905681 -66376808 + L1 LINE L1 1380 1510 -5658 566 0 29 0 chr12 77905681 77905750 -66376739 + (CAATT)n Simple_repeat Simple_repeat 2 72 0 1714 284 40 10 chr12 77905750 77906113 -66376376 + L1 LINE L1 1510 1894 -5274 * 1740 229 39 0 chr12 77906108 77906586 -66375903 + L1 LINE L1 5945 6442 -743 4264 219 45 38 chr12 77906822 77908672 -66373817 + L1MB7 LINE L1 3976 5838 -346 1394 283 43 56 chr12 77908665 77909223 -66373266 - L1M2a LINE L1 -5778 1390 840 * 2682 247 47 77 chr12 77909221 77911686 -66370803 - L1M4 LINE L1 -2964 3680 1193 2025 185 52 11 chr12 77911686 77911854 -66370635 - L1MC2 LINE L1 -9 6335 6175 285 118 0 0 chr12 77911854 77911905 -66370584 + (TA)n Simple_repeat Simple_repeat 1 51 0 2025 185 52 11 chr12 77911905 77912196 -66370293 - L1MC2 LINE L1 -169 6175 5857 2682 247 47 77 chr12 77912196 77912564 -66369925 - L1M4 LINE L1 -5451 1193 816 1958 139 3 3 chr12 77912575 77912869 -66369620 + AluSx SINE Alu 1 294 -18 282 261 73 107 chr12 77913032 77913293 -66369196 - L1M4 LINE L1 -6103 543 292 21 0 0 0 chr12 77913429 77913450 -66369039 + AT_rich Low_complexity Low_complexity 1 21 0 366 311 46 33 chr12 77913725 77913876 -66368613 + L3b LINE CR1 1300 1452 -131 255 293 48 48 chr12 77914515 77914682 -66367807 - L1ME4a LINE L1 -196 5925 5759 4194 256 74 62 chr12 77915629 77916248 -66366241 + L1M4 LINE L1 16 626 -6018 2218 151 8 11 chr12 77916248 77916613 -66365876 + THE1B LTR MaLR 1 364 0 4194 256 74 62 chr12 77916613 77917652 -66364837 + L1M4 LINE L1 626 1651 -4993 553 128 0 0 chr12 77917652 77917738 -66364751 - AluY SINE Alu -12 299 214 4194 256 74 62 chr12 77917738 77917990 -66364499 + L1M4 LINE L1 1651 1898 -4746 1831 189 0 0 chr12 77917990 77918302 -66364187 + AluSx SINE Alu 1 312 0 4194 256 74 62 chr12 77918302 77919274 -66363215 + L1M4 LINE L1 1898 3049 -3595 26 30 0 0 chr12 77919651 77919684 -66362805 + AT_rich Low_complexity Low_complexity 1 33 0 293 184 26 26 chr12 77920774 77920850 -66361639 - MER4C LTR ERV1 -109 356 281 533 43 0 14 chr12 77920871 77920941 -66361548 - MER4A LTR ERV1 -241 423 355 2197 75 2 134 chr12 77920978 77921002 -66361487 - MER4A LTR ERV1 -307 357 331 2315 87 3 0 chr12 77921002 77921301 -66361188 - AluSp SINE Alu -13 300 1 2197 75 2 134 chr12 77921301 77921687 -66360802 - MER4A LTR ERV1 -333 331 1 1313 253 75 18 chr12 77922366 77922753 -66359736 + MLT1C LTR MaLR 4 412 -55 2311 67 0 0 chr12 77923205 77923488 -66359001 + AluY SINE Alu 17 299 -12 28 48 0 0 chr12 77925063 77925105 -66357384 + AT_rich Low_complexity Low_complexity 1 42 0 378 272 44 137 chr12 77925517 77925859 -66356630 + L1ME LINE L1 1157 1466 -5481 247 197 61 0 chr12 77925860 77925926 -66356563 + L1ME LINE L1 1333 1402 -5457 344 293 50 21 chr12 77927126 77927266 -66355223 - MIR SINE MIR 0 262 119 34 65 0 0 chr12 77927567 77927629 -66354860 + AT_rich Low_complexity Low_complexity 1 62 0 28 48 0 0 chr12 77927650 77927692 -66354797 + AT_rich Low_complexity Low_complexity 1 42 0 302 317 56 49 chr12 77927830 77927972 -66354517 - MER5A DNA MER1_type -2 187 45 2078 209 46 0 chr12 77928072 77928508 -66353981 + MSTB2 LTR MaLR 2 457 0 22 103 0 0 chr12 77929151 77929229 -66353260 + AT_rich Low_complexity Low_complexity 1 78 0 2029 13 0 0 chr12 77929350 77929574 -66352915 - AluYb8 SINE Alu -9 309 86 3746 117 5 2 chr12 77929681 77930262 -66352227 - L1PA8 LINE L1 -774 5372 4790 5807 80 2 0 chr12 77930262 77931047 -66351442 + L1PA8 LINE L1 5375 6161 -11 26 82 0 0 chr12 77931167 77931228 -66351261 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr12 77931576 77931606 -66350883 + AT_rich Low_complexity Low_complexity 1 30 0 326 286 94 35 chr12 77931676 77931847 -66350642 + L1MC4a LINE L1 5312 5492 -2503 272 192 19 0 chr12 77932296 77932348 -66350141 + L1MC4a LINE L1 6682 6734 -1074 2626 238 35 26 chr12 77932350 77933132 -66349357 + L1MD3 LINE L1 6992 7995 0 186 103 0 0 chr12 77933162 77933191 -66349298 + (CA)n Simple_repeat Simple_repeat 2 30 0 1096 289 109 28 chr12 77935245 77935830 -66346659 + L2 LINE L2 2688 3313 0 495 301 69 59 chr12 77937944 77938333 -66344156 - LTR16A LTR ERVL -39 418 26 24413 174 28 24 chr12 77938464 77944601 -66337888 + L1PA10 LINE L1 1 6159 -9 22 0 0 0 chr12 77944603 77944625 -66337864 + AT_rich Low_complexity Low_complexity 1 22 0 275 291 81 27 chr12 77945701 77945849 -66336640 - MIR SINE MIR -37 225 70 3570 110 30 7 chr12 77946096 77946660 -66335829 + L1MA2 LINE L1 5728 6304 0 1121 319 48 17 chr12 77947789 77948203 -66334286 + MER69 DNA AcHobo 28 454 -772 299 241 48 82 chr12 77948203 77948410 -66334079 + MER69 DNA AcHobo 2326 2525 -1 1228 224 78 12 chr12 77948521 77948865 -66333624 + MER58D DNA MER1_type 20 386 0 25 0 0 0 chr12 77950643 77950668 -66331821 + AT_rich Low_complexity Low_complexity 1 25 0 369 0 0 0 chr12 77950694 77950735 -66331754 + (TG)n Simple_repeat Simple_repeat 1 41 0 484 389 24 17 chr12 77951681 77951977 -66330512 - L2 LINE L2 -452 2862 2565 216 280 161 11 chr12 77952273 77952366 -66330123 + MIR SINE MIR 91 197 -65 825 169 33 13 chr12 77952547 77952730 -66329759 - L1PB4 LINE L1 -137 6024 5845 * 1345 210 20 20 chr12 77952729 77952859 -66329630 + L1 LINE L1 4133 4262 -1884 2477 95 2 81 chr12 77952859 77953268 -66329221 - MER51B LTR ERV1 0 377 1 1345 210 20 20 chr12 77953268 77953489 -66329000 + L1 LINE L1 4261 4484 -1662 3770 248 30 1 chr12 77954131 77954950 -66327539 + L1M3de LINE L1 931 1773 -4880 10876 205 68 65 chr12 77954970 77955861 -66326628 + L1MA7 LINE L1 2365 3252 -4458 2113 125 7 0 chr12 77955861 77956165 -66326324 - AluSp SINE Alu -7 306 1 10876 205 68 65 chr12 77956165 77960045 -66322444 + L1MA7 LINE L1 3252 7168 -542 897 204 78 111 chr12 77960045 77960505 -66321984 + MER65A LTR ERV1 1 445 0 10876 205 68 65 chr12 77960505 77961050 -66321439 + L1MA7 LINE L1 7168 7710 0 1015 255 47 17 chr12 77961080 77961441 -66321048 + MLT1-int LTR MaLR 4 375 -996 193 316 68 51 chr12 77961866 77961983 -66320506 + L2 LINE L2 3165 3283 -30 2153 124 3 0 chr12 77962278 77962585 -66319904 + AluSq SINE Alu 1 308 -5 41202 67 4 5 chr12 77962678 77968845 -66313644 - L1PA5 LINE L1 0 6154 1 28 29 0 0 chr12 77969247 77969282 -66313207 + AT_rich Low_complexity Low_complexity 1 35 0 2352 102 3 0 chr12 77969636 77969941 -66312548 + AluSp SINE Alu 1 306 -7 31 0 0 0 chr12 77970738 77970769 -66311720 + AT_rich Low_complexity Low_complexity 1 31 0 2540 50 0 0 chr12 77971698 77971998 -66310491 - AluY SINE Alu -11 300 1 25 31 0 0 chr12 77972312 77972344 -66310145 + AT_rich Low_complexity Low_complexity 1 32 0 2182 106 20 0 chr12 77972354 77972657 -66309832 + AluSc SINE Alu 1 309 0 186 118 0 0 chr12 77972777 77972811 -66309678 + (TTATA)n Simple_repeat Simple_repeat 3 36 0 1583 103 40 59 chr12 77973014 77973287 -66309202 + AluY SINE Alu 44 311 0 26 50 0 0 chr12 77973792 77973832 -66308657 + AT_rich Low_complexity Low_complexity 1 40 0 229 286 56 31 chr12 77973998 77974159 -66308330 + L1MC1 LINE L1 1864 2028 -4512 9747 223 23 14 chr12 77974193 77977739 -66304750 + L1PA16 LINE L1 2596 6166 0 1734 263 142 14 chr12 77977951 77978613 -66303876 + L1ME2 LINE L1 5408 6154 -10 8845 221 33 21 chr12 77979259 77980937 -66301552 + L1MC1 LINE L1 3061 4718 -2009 1949 120 11 11 chr12 77980937 77981221 -66301268 + AluSg SINE Alu 1 284 -26 8845 221 33 21 chr12 77981221 77983014 -66299475 + L1MC1 LINE L1 4718 6572 -155 195 100 0 0 chr12 77983711 77983741 -66298748 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 22 35 0 0 chr12 77983779 77983808 -66298681 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr12 77984076 77984119 -66298370 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr12 77984696 77984724 -66297765 + AT_rich Low_complexity Low_complexity 1 28 0 1963 109 6 73 chr12 77984897 77985237 -66297252 + MER1B DNA MER1_type 1 317 -22 22 35 0 0 chr12 77985477 77985506 -66296983 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 77986381 77986409 -66296080 + AT_rich Low_complexity Low_complexity 1 28 0 2019 132 3 3 chr12 77987820 77988108 -66294381 - AluSx SINE Alu -24 288 1 21 0 0 0 chr12 77989544 77989565 -66292924 + AT_rich Low_complexity Low_complexity 1 21 0 16265 129 22 110 chr12 77989578 77993183 -66289306 + L1P LINE L1 13 3302 -2844 1796 264 45 13 chr12 77993658 77994265 -66288224 - L1M4 LINE L1 -1244 4902 4277 395 319 56 49 chr12 77994541 77994826 -66287663 + L1M4 LINE L1 4109 4395 -1751 998 94 0 0 chr12 77994837 77994965 -66287524 - AluSc SINE Alu -181 128 1 308 260 73 10 chr12 77995136 77995232 -66287257 + L1M4 LINE L1 4511 4612 -1534 204 96 0 58 chr12 77996126 77996178 -66286311 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 1144 82 12 0 chr12 77996178 77996348 -66286141 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 2084 87 22 0 chr12 77996349 77996624 -66285865 - AluSq SINE Alu -32 281 1 622 230 0 7 chr12 77997261 77997396 -66285093 + AluJo SINE Alu 3 136 -176 625 298 48 13 chr12 77997607 77997892 -66284597 - MER93a LTR ERV1 -4 369 92 1485 202 39 3 chr12 77998218 77998500 -66283989 - AluJb SINE Alu -19 293 2 3472 166 33 68 chr12 77998508 77999321 -66283168 + LTR1 LTR ERV1 1 785 0 22 35 0 0 chr12 78000301 78000330 -66282159 + AT_rich Low_complexity Low_complexity 1 29 0 1408 196 3 57 chr12 78000431 78000747 -66281742 + AluJo SINE Alu 1 299 -13 1467 178 4 4 chr12 78000925 78001194 -66281295 - AluJb SINE Alu 0 312 44 549 345 50 34 chr12 78001233 78001331 -66281158 + L1M3b LINE L1 1216 1311 -6185 4849 164 23 16 chr12 78001331 78002227 -66280262 + MER4D LTR ERV1 1 903 0 549 345 50 34 chr12 78002227 78002569 -66279920 + L1M3b LINE L1 1311 1663 -5833 3245 276 40 10 chr12 78002582 78003744 -66278745 + L1M3b LINE L1 1898 3093 -4472 2021 218 16 43 chr12 78003739 78004299 -66278190 + L1MA6 LINE L1 5505 6049 -251 * 889 276 78 38 chr12 78004829 78005224 -66277265 + L1MC4 LINE L1 5481 5891 -1917 22 70 0 0 chr12 78005371 78005414 -66277075 + AT_rich Low_complexity Low_complexity 1 43 0 26 64 0 0 chr12 78005623 78005670 -66276819 + AT_rich Low_complexity Low_complexity 1 47 0 493 267 94 100 chr12 78005792 78006152 -66276337 + L1MC4 LINE L1 6719 7076 -966 302 241 0 0 chr12 78006381 78006439 -66276050 + MLT1E1 LTR MaLR 49 106 -548 239 254 42 0 chr12 78006540 78006611 -66275878 + L1ME3A LINE L1 6081 6154 -16 225 196 0 0 chr12 78008158 78008204 -66274285 + CT-rich Low_complexity Low_complexity 2 47 0 492 265 19 101 chr12 78008422 78008552 -66273937 + MIR SINE MIR 12 112 -150 468 0 0 0 chr12 78008552 78008604 -66273885 + (TG)n Simple_repeat Simple_repeat 1 52 0 492 265 19 101 chr12 78008604 78008730 -66273759 + MIR SINE MIR 112 247 -15 223 338 53 23 chr12 78009380 78009513 -66272976 - MIR SINE MIR -8 254 118 2126 74 6 45 chr12 78009962 78010274 -66272215 - AluY SINE Alu -11 300 1 276 312 109 14 chr12 78011792 78011930 -66270559 - MIR SINE MIR -93 169 19 183 80 0 0 chr12 78012073 78012098 -66270391 + (CA)n Simple_repeat Simple_repeat 2 26 0 264 122 0 0 chr12 78012214 78012255 -66270234 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 1627 145 50 0 chr12 78012259 78012521 -66269968 - AluSx SINE Alu -37 275 1 202 114 0 29 chr12 78012845 78012880 -66269609 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 188 350 107 52 chr12 78013589 78014346 -66268143 - L2 LINE L2 -1042 2272 1474 2121 207 22 20 chr12 78014426 78014870 -66267619 - MER74C LTR ERVL -12 448 4 388 330 138 5 chr12 78014975 78015163 -66267326 - MIR SINE MIR -37 225 13 356 244 22 30 chr12 78018616 78018751 -66263738 + (TATATG)n Simple_repeat Simple_repeat 4 137 0 581 264 67 37 chr12 78018870 78019139 -66263350 + MER114 LTR ERV 370 646 -2 40593 72 4 4 chr12 78022606 78028762 -66253727 + L1PA5 LINE L1 3 6158 0 34 0 0 0 chr12 78028775 78028809 -66253680 + AT_rich Low_complexity Low_complexity 1 34 0 311 0 26 0 chr12 78028898 78028937 -66253552 + (CA)n Simple_repeat Simple_repeat 1 40 0 22 35 0 0 chr12 78031222 78031251 -66251238 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 78031586 78031607 -66250882 + AT_rich Low_complexity Low_complexity 1 21 0 236 231 0 0 chr12 78032270 78032322 -66250167 - L1MD3 LINE L1 -1325 6670 6619 43 88 0 0 chr12 78033018 78033131 -66249358 + AT_rich Low_complexity Low_complexity 1 113 0 434 248 7 0 chr12 78034343 78034484 -66248005 + GA-rich Low_complexity Low_complexity 3 144 0 451 81 0 0 chr12 78034573 78034635 -66247854 + L1PA5 LINE L1 6091 6152 -2 522 297 96 60 chr12 78035095 78035575 -66246914 - L1ME3A LINE L1 -9 6161 5653 595 283 16 21 chr12 78035575 78035762 -66246727 + MER5A DNA MER1_type 1 186 -3 522 297 96 60 chr12 78035762 78035898 -66246591 - L1ME3A LINE L1 -517 5653 5523 856 291 101 28 chr12 78035919 78036314 -66246175 + LTR16A LTR ERVL 16 439 -11 287 140 163 28 chr12 78036395 78036539 -66245950 - L1ME3A LINE L1 -735 5429 5258 1316 214 56 11 chr12 78036747 78037103 -66245386 + L1MDa LINE L1 1707 2078 -4462 339 324 71 27 chr12 78037305 78037530 -66244959 - L1MDa LINE L1 -4444 2096 1862 585 276 99 26 chr12 78037586 78037945 -66244544 - MLT1I LTR MaLR 0 409 1 272 305 0 11 chr12 78037959 78038054 -66244435 + GA-rich Low_complexity Low_complexity 2 95 0 1897 236 38 52 chr12 78038632 78039133 -66243356 - LTR42 LTR ERVL 0 495 2 192 377 75 20 chr12 78039274 78039420 -66243069 + L2 LINE L2 1405 1558 -1756 328 250 120 0 chr12 78039595 78039695 -66242794 + L2 LINE L2 2107 2218 -1096 486 355 40 38 chr12 78039711 78040057 -66242432 + L2 LINE L2 2832 3178 -135 210 235 0 44 chr12 78040094 78040150 -66242339 + MIR SINE MIR 166 220 -42 2037 122 10 3 chr12 78040150 78040445 -66242044 - AluSx SINE Alu -10 302 6 210 235 0 44 chr12 78040445 78040456 -66242033 + MIR SINE MIR 220 230 -32 438 316 309 7 chr12 78040669 78041083 -66241406 + L2 LINE L2 2219 2757 -557 6069 115 37 0 chr12 78041132 78042380 -66240109 + L1PA10 LINE L1 4873 6166 -2 263 319 17 9 chr12 78042385 78042501 -66239988 + L2 LINE L2 2236 2352 -962 1990 142 7 7 chr12 78042534 78042844 -66239645 - AluSx SINE Alu -2 310 1 2366 171 33 5 chr12 78043352 78043774 -66238715 + Tigger2a DNA MER2_type 1 434 0 328 299 24 55 chr12 78043909 78044036 -66238453 + L2 LINE L2 3190 3312 -1 1968 114 49 35 chr12 78045156 78045315 -66237174 - L1MA9 LINE L1 0 6312 6157 216 0 0 0 chr12 78045315 78045339 -66237150 + (TG)n Simple_repeat Simple_repeat 1 24 0 1968 114 49 35 chr12 78045339 78045546 -66236943 - L1MA9 LINE L1 -155 6157 5941 317 321 25 74 chr12 78048425 78048587 -66233902 - MER52A LTR ERV1 0 1755 1602 226 255 0 102 chr12 78048626 78048724 -66233765 - LTR28 LTR ERV1 -156 864 777 2675 215 149 11 chr12 78048724 78049437 -66233052 - LTR28 LTR ERV1 -209 811 1 3259 102 25 30 chr12 78050939 78051436 -66231053 + L1M1 LINE L1 3067 3563 -4002 2214 75 11 3 chr12 78051436 78051758 -66230731 + AluY SINE Alu 3 326 0 3259 102 25 30 chr12 78051758 78051828 -66230661 + L1M1 LINE L1 3563 3632 -3933 11591 210 34 13 chr12 78052281 78052515 -66229974 + L1M1 LINE L1 3624 3852 -3713 458 0 35 0 chr12 78052515 78052572 -66229917 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 11591 210 34 13 chr12 78052572 78055196 -66227293 + L1M1 LINE L1 3852 6540 -1025 1191 206 91 60 chr12 78055196 78055560 -66226929 + THE1C LTR MaLR 1 375 0 6132 216 25 5 chr12 78055560 78056813 -66225676 + THE1C-int LTR MaLR 1 1278 -373 2024 189 102 32 chr12 78056858 78057350 -66225139 + LTR49 LTR ERV1 69 594 -1 758 277 45 11 chr12 78057355 78057709 -66224780 + L1M4 LINE L1 4226 4591 -1555 253 239 0 22 chr12 78057749 78057841 -66224648 - L1MC4 LINE L1 -1339 6703 6614 241 292 0 0 chr12 78057787 78057876 -66224613 + L1MC4 LINE L1 6614 6702 -1340 * 422 244 8 0 chr12 78057888 78057997 -66224492 - AluJ/FLAM SINE Alu -211 91 13 925 284 40 18 chr12 78058001 78058455 -66224034 + L1M4 LINE L1 4630 5093 -1053 28 0 0 0 chr12 78058455 78058483 -66224006 + AT_rich Low_complexity Low_complexity 1 28 0 2063 129 0 0 chr12 78058484 78058770 -66223719 - AluSx SINE Alu -26 286 1 395 289 28 40 chr12 78058773 78058972 -66223517 + L1M4 LINE L1 5084 5281 -865 1717 173 3 20 chr12 78058972 78059267 -66223222 + AluJb SINE Alu 4 293 -19 395 289 28 40 chr12 78059267 78059320 -66223169 + L1M4 LINE L1 5281 5333 -813 290 283 57 9 chr12 78059469 78059575 -66222914 + MLT1J2 LTR MaLR 312 422 -28 765 245 101 0 chr12 78059637 78059825 -66222664 + MER20 DNA MER1_type 2 208 -11 427 266 151 80 chr12 78059834 78060258 -66222231 + LTR16A1 LTR ERVL 3 456 -1 368 368 63 32 chr12 78060267 78060854 -66221635 + HERV16 LTR ERVL 15 619 -4377 2665 158 45 24 chr12 78061240 78061604 -66220885 + LTR44 LTR ERV1 1 381 -138 2409 110 19 16 chr12 78061604 78061967 -66220522 + THE1B LTR MaLR 1 364 0 2665 158 45 24 chr12 78061967 78062110 -66220379 + LTR44 LTR ERV1 381 519 0 278 300 46 15 chr12 78062115 78062245 -66220244 - MLT1F1 LTR MaLR 0 593 460 494 253 184 73 chr12 78062353 78062614 -66219875 - MLT1F1 LTR MaLR -159 408 119 549 304 45 107 chr12 78062676 78063389 -66219100 - MLT1F1-int LTR MaLR -6 1365 697 275 266 109 16 chr12 78064078 78064206 -66218283 - MLT1F1-int LTR MaLR -1591 144 5 1129 293 143 40 chr12 78064212 78064730 -66217759 - MLT1F1 LTR MaLR -3 564 20 442 289 86 59 chr12 78065512 78065894 -66216595 - LTR68 LTR ERV1 -307 433 38 1857 141 69 33 chr12 78065894 78066256 -66216233 + THE1C LTR MaLR 1 375 0 442 289 86 59 chr12 78066256 78066282 -66216207 - LTR68 LTR ERV1 -702 38 14 310 278 31 17 chr12 78067517 78067673 -66214816 - MLT1J LTR MaLR -335 176 19 6773 225 72 37 chr12 78067752 78069452 -66213037 + L1PA13 LINE L1 83 1842 -4945 3660 236 41 3 chr12 78069460 78070391 -66212098 - L1PA15-16 LINE L1 -3943 2906 1941 267 327 107 7 chr12 78070552 78070702 -66211787 + MIR SINE MIR 98 262 0 26 0 0 0 chr12 78070835 78070861 -66211628 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr12 78070920 78070943 -66211546 + AT_rich Low_complexity Low_complexity 1 23 0 1963 219 90 30 chr12 78071066 78071668 -66210821 + LTR48B LTR ERV1 7 644 0 23 33 0 0 chr12 78071714 78071744 -66210745 + AT_rich Low_complexity Low_complexity 1 30 0 244 359 39 0 chr12 78072099 78072202 -66210287 + MIR SINE MIR 40 146 -116 315 135 27 27 chr12 78072825 78072899 -66209590 - MER53 DNA DNA -105 84 11 1020 321 72 21 chr12 78072914 78073540 -66208949 - L1ME3A LINE L1 -197 5973 5316 1499 266 108 0 chr12 78073844 78074296 -66208193 + MLT1D LTR MaLR 5 505 0 431 273 8 8 chr12 78074296 78074424 -66208065 + MLT1D-int LTR MaLR 1 128 -1243 29465 133 9 63 chr12 78074427 78079996 -66202493 + L1P LINE L1 12 5281 -865 1562 204 71 47 chr12 78079996 78080504 -66201985 + L1MC3 LINE L1 4208 7100 -685 280 189 27 54 chr12 78080517 78080591 -66201898 + MLT1H LTR MaLR 93 164 -385 328 239 0 0 chr12 78080598 78080665 -66201824 + L1MC3 LINE L1 7194 7260 -525 2114 209 13 69 chr12 78080672 78081224 -66201265 - MER67B LTR ERV1 -1 578 169 1338 234 57 14 chr12 78081224 78081647 -66200842 + LTR47B LTR ERVL 1 441 -2 2114 209 13 69 chr12 78081647 78081795 -66200694 - MER67B LTR ERV1 -410 169 14 417 236 22 0 chr12 78081794 78081883 -66200606 - MER67A LTR ERV1 -452 91 1 * 2212 211 12 29 chr12 78081884 78082397 -66200092 + L1MC3 LINE L1 7265 7768 -17 493 192 20 20 chr12 78082518 78082617 -66199872 - U6 snRNA snRNA 0 107 9 948 244 74 104 chr12 78082672 78083621 -66198868 - L1MEc LINE L1 -3097 3844 2925 683 253 33 4 chr12 78083628 78083869 -66198620 - L1MEc LINE L1 -4191 2931 2684 25 65 0 0 chr12 78084187 78084233 -66198256 + AT_rich Low_complexity Low_complexity 1 46 0 950 310 81 35 chr12 78084234 78085424 -66197065 - L1MEc LINE L1 -4564 2558 1314 571 247 89 77 chr12 78085450 78086091 -66196398 + L1ME LINE L1 4853 5495 -669 341 222 0 0 chr12 78086092 78086173 -66196316 - L1M LINE L1 -773 5405 5325 388 257 48 59 chr12 78086296 78086483 -66196006 - L1MEc LINE L1 -6228 195 11 23 0 0 0 chr12 78086703 78086726 -66195763 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr12 78087583 78087614 -66194875 + AT_rich Low_complexity Low_complexity 1 31 0 17246 187 48 33 chr12 78087787 78092347 -66190142 + L1MA1 LINE L1 22 4724 -2939 2643 31 0 0 chr12 78092347 78092664 -66189825 + L1PA4 LINE L1 5839 6155 0 17246 187 48 33 chr12 78092664 78094896 -66187593 + L1MA1 LINE L1 4724 6920 -743 5930 108 18 4 chr12 78094896 78096272 -66186217 + L1PA11 LINE L1 4771 6166 -8 4451 118 44 7 chr12 78096277 78096735 -66185754 + L1MA1 LINE L1 6968 7464 -257 186 43 0 0 chr12 78096735 78096758 -66185731 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 4451 118 44 7 chr12 78096758 78097019 -66185470 + L1MA1 LINE L1 7464 7714 -7 308 342 118 11 chr12 78097326 78097513 -66184976 - MLT1I LTR MaLR -119 290 84 22 0 0 0 chr12 78098132 78098154 -66184335 + AT_rich Low_complexity Low_complexity 1 22 0 216 213 0 21 chr12 78098242 78098289 -66184200 + GA-rich Low_complexity Low_complexity 2 47 0 207 0 0 0 chr12 78098508 78098531 -66183958 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr12 78099079 78099102 -66183387 + (TG)n Simple_repeat Simple_repeat 2 24 0 180 111 0 0 chr12 78099432 78099459 -66183030 + (TA)n Simple_repeat Simple_repeat 2 28 0 1997 127 30 67 chr12 78099652 78100053 -66182436 + MLT1B LTR MaLR 5 390 0 22 56 0 0 chr12 78100725 78100761 -66181728 + AT_rich Low_complexity Low_complexity 1 36 0 186 133 0 0 chr12 78100963 78100993 -66181496 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 438 340 64 55 chr12 78101002 78101582 -66180907 + L1M4 LINE L1 2283 2867 -3279 334 261 51 11 chr12 78101777 78101878 -66180611 - MIR SINE MIR -98 110 4 2640 42 0 0 chr12 78102013 78102349 -66180140 - AluY SINE Alu 0 336 1 2188 119 0 0 chr12 78102857 78103160 -66179329 + AluSg SINE Alu 1 303 -7 255 103 0 0 chr12 78103925 78103964 -66178525 + (TG)n Simple_repeat Simple_repeat 1 39 0 22 35 0 0 chr12 78104349 78104378 -66178111 + AT_rich Low_complexity Low_complexity 1 29 0 204 198 25 37 chr12 78104518 78104599 -66177890 + (TTTAA)n Simple_repeat Simple_repeat 4 83 0 1309 161 47 33 chr12 78104907 78105181 -66177308 + L1MA9 LINE L1 5798 6075 -237 978 222 30 21 chr12 78105581 78105815 -66176674 - AluJo SINE Alu -23 289 54 26454 128 13 98 chr12 78106372 78109090 -66173399 + L1PA7 LINE L1 1 2949 -3205 736 115 0 0 chr12 78109090 78109194 -66173295 + AluSg/x SINE Alu 195 298 -11 26454 128 13 98 chr12 78109194 78110977 -66171512 + L1PA7 LINE L1 2949 4882 -1272 800 126 0 0 chr12 78110977 78111096 -66171393 - AluSp/q SINE Alu -14 299 181 26454 128 13 98 chr12 78111096 78112306 -66170183 + L1PA7 LINE L1 4882 5290 -864 2302 104 0 0 chr12 78112306 78112603 -66169886 + AluY SINE Alu 1 297 -14 26454 128 13 98 chr12 78112603 78113382 -66169107 + L1PA7 LINE L1 5290 6134 -20 1667 226 19 35 chr12 78113566 78113991 -66168498 - L1MC3 LINE L1 -373 7412 6995 2420 218 147 14 chr12 78114091 78114820 -66167669 - L1MC3 LINE L1 -1226 6559 5734 418 307 15 15 chr12 78114815 78114952 -66167537 - L1M4 LINE L1 -2015 4131 3995 * 243 139 23 0 chr12 78114968 78115011 -66167478 - MSTB2 LTR MaLR 0 457 414 1790 224 56 47 chr12 78115011 78115348 -66167141 + L1MCb LINE L1 856 1188 -5242 1972 153 3 0 chr12 78115348 78115655 -66166834 + AluSx SINE Alu 1 308 -4 1790 224 56 47 chr12 78115655 78116029 -66166460 + L1MCb LINE L1 1188 1579 -4851 646 292 30 30 chr12 78116026 78116331 -66166158 - L1MCb LINE L1 -5187 858 554 * 1175 316 58 27 chr12 78116413 78116960 -66165529 - L1MCb LINE L1 -5481 564 1 25 31 0 0 chr12 78117543 78117575 -66164914 + AT_rich Low_complexity Low_complexity 1 32 0 426 176 286 0 chr12 78117621 78117712 -66164777 - FLAM_C SINE Alu -26 117 1 257 0 30 0 chr12 78118090 78118123 -66164366 + (TA)n Simple_repeat Simple_repeat 2 35 0 2402 72 0 0 chr12 78118510 78118801 -66163688 - AluY SINE Alu -20 291 1 444 191 17 9 chr12 78118825 78118940 -66163549 + GA-rich Low_complexity Low_complexity 2 117 0 328 313 28 62 chr12 78119126 78119217 -66163272 + MIR SINE MIR 20 104 -158 2054 142 0 3 chr12 78119217 78119527 -66162962 - AluSx SINE Alu -3 309 1 328 313 28 62 chr12 78119527 78119611 -66162878 + MIR SINE MIR 104 189 -73 553 298 73 19 chr12 78119968 78120173 -66162316 - MIR SINE MIR -44 218 3 291 259 19 56 chr12 78122007 78122107 -66160382 + MLT1E2 LTR MaLR 19 116 -510 1725 179 6 10 chr12 78122107 78122419 -66160070 + AluSx SINE Alu 2 312 0 293 61 0 20 chr12 78122427 78122476 -66160013 + (TTAAA)n Simple_repeat Simple_repeat 3 50 0 1388 278 129 7 chr12 78122476 78122926 -66159563 + MLT1E2 LTR MaLR 116 620 -6 31 44 0 0 chr12 78123584 78123629 -66158860 + AT_rich Low_complexity Low_complexity 1 45 0 1970 166 0 0 chr12 78123847 78124149 -66158340 - AluJb SINE Alu -10 302 1 405 312 114 48 chr12 78124184 78124623 -66157866 - HAL1 LINE L1 -1178 1329 862 21 0 0 0 chr12 78127205 78127226 -66155263 + AT_rich Low_complexity Low_complexity 1 21 0 1916 122 42 0 chr12 78127226 78127513 -66154976 - AluY SINE Alu -12 299 1 24 32 0 0 chr12 78127891 78127922 -66154567 + AT_rich Low_complexity Low_complexity 1 31 0 251 378 10 0 chr12 78128028 78128126 -66154363 - L2 LINE L2 -1 3312 3214 25 0 0 0 chr12 78128157 78128182 -66154307 + AT_rich Low_complexity Low_complexity 1 25 0 207 387 66 36 chr12 78129397 78129699 -66152790 - L2 LINE L2 -374 2940 2630 2726 169 20 88 chr12 78129890 78130539 -66151950 + MER6A DNA MER2_type 1 605 0 1760 165 15 21 chr12 78130773 78131101 -66151388 - MER2 DNA MER2_type 0 345 20 290 123 38 28 chr12 78131780 78131886 -66150603 + (TA)n Simple_repeat Simple_repeat 1 107 0 21 0 0 0 chr12 78132645 78132666 -66149823 + AT_rich Low_complexity Low_complexity 1 21 0 361 281 187 62 chr12 78133057 78133410 -66149079 - MLT1L LTR MaLR -70 545 149 990 210 19 4 chr12 78133711 78133952 -66148537 - MER33 DNA MER1_type -236 88 1 1949 74 0 0 chr12 78134056 78134325 -66148164 + AluY SINE Alu 41 309 0 372 331 0 51 chr12 78134388 78134545 -66147944 + MIR SINE MIR 65 213 -49 23 33 0 0 chr12 78135822 78135852 -66146637 + AT_rich Low_complexity Low_complexity 1 30 0 1653 153 7 16 chr12 78136169 78136476 -66146013 + L1MA3 LINE L1 6002 6305 0 631 270 121 14 chr12 78137017 78137232 -66145257 - MIR SINE MIR -10 252 15 4079 59 2 0 chr12 78137240 78137749 -66144740 + L1PA7 LINE L1 5630 6139 -15 196 357 65 50 chr12 78138364 78138563 -66143926 - MIR SINE MIR -46 216 15 25 51 0 0 chr12 78139041 78139080 -66143409 + AT_rich Low_complexity Low_complexity 1 39 0 30 0 0 0 chr12 78139126 78139156 -66143333 + AT_rich Low_complexity Low_complexity 1 30 0 1989 138 16 3 chr12 78139211 78139515 -66142974 - AluSx SINE Alu -4 308 1 238 328 107 55 chr12 78139735 78140025 -66142464 + L2 LINE L2 2625 2929 -385 1055 283 32 35 chr12 78140120 78140495 -66141994 + MLT1A2 LTR MaLR 1 374 0 2450 207 72 148 chr12 78140499 78140671 -66141818 + MLT1A2-int LTR MaLR 5 189 -1182 2328 103 0 0 chr12 78140671 78140981 -66141508 + AluSq SINE Alu 1 310 -3 2450 207 72 148 chr12 78140981 78142129 -66140360 + MLT1A2-int LTR MaLR 189 1369 -2 1317 226 54 38 chr12 78142137 78142505 -66139984 + MLT1A2 LTR MaLR 1 374 0 273 380 47 67 chr12 78142637 78142937 -66139552 + L2 LINE L2 2978 3271 -1 325 179 0 0 chr12 78143015 78143071 -66139418 + MLT2B2 LTR ERVL 3 58 -457 * 842 208 0 79 chr12 78143066 78143224 -66139265 + MLT2B1 LTR ERVL 335 475 -45 261 0 0 0 chr12 78143224 78143253 -66139236 + (CA)n Simple_repeat Simple_repeat 2 30 0 842 208 0 79 chr12 78143253 78143296 -66139193 + MLT2B1 LTR ERVL 475 520 0 29 78 0 0 chr12 78143297 78143361 -66139128 + AT_rich Low_complexity Low_complexity 1 64 0 199 375 0 0 chr12 78144605 78144677 -66137812 - L2 LINE L2 -50 3263 3192 28 86 0 0 chr12 78145059 78145129 -66137360 + AT_rich Low_complexity Low_complexity 1 70 0 307 345 47 7 chr12 78145304 78145452 -66137037 + MIR SINE MIR 79 232 -30 252 200 17 0 chr12 78145870 78145930 -66136559 + (CA)n Simple_repeat Simple_repeat 2 62 0 729 295 173 8 chr12 78147059 78147548 -66134941 - L2 LINE L2 -126 3187 2605 389 286 71 34 chr12 78147605 78147874 -66134615 - HAL1 LINE L1 -4 2503 2225 383 335 22 16 chr12 78148000 78148185 -66134304 - L1MC/D LINE L1 -2084 5724 5539 372 223 0 21 chr12 78149790 78149884 -66132605 + MER69 DNA AcHobo 1835 1926 -600 987 261 69 38 chr12 78149958 78150379 -66132110 + MER69 DNA AcHobo 1923 2356 -170 2261 211 25 31 chr12 78150379 78150674 -66131815 + MER67D LTR ERV1 1 293 -221 2156 153 28 0 chr12 78150674 78151028 -66131461 + THE1B LTR MaLR 1 364 0 2261 211 25 31 chr12 78151028 78151249 -66131240 + MER67D LTR ERV1 293 514 0 479 242 24 24 chr12 78151249 78151414 -66131075 + MER69 DNA AcHobo 2353 2517 -9 229 405 38 8 chr12 78152099 78152230 -66130259 + L2 LINE L2 3137 3271 -1 206 322 0 0 chr12 78152230 78152289 -66130200 + GA-rich Low_complexity Low_complexity 4 62 0 192 40 0 0 chr12 78152424 78152449 -66130040 + (CA)n Simple_repeat Simple_repeat 2 26 0 1371 209 37 48 chr12 78153020 78153185 -66129304 - MLT1A2 LTR MaLR -23 351 186 383 0 21 0 chr12 78153185 78153232 -66129257 + (GA)n Simple_repeat Simple_repeat 2 49 0 1371 209 37 48 chr12 78153232 78153421 -66129068 - MLT1A2 LTR MaLR -188 186 1 321 281 18 84 chr12 78153460 78153627 -66128862 - L2 LINE L2 -927 2387 2232 704 224 14 0 chr12 78153700 78153847 -66128642 + FRAM SINE Alu 1 149 -17 3988 165 48 17 chr12 78154088 78154844 -66127645 - MER4E LTR ERV1 0 779 1 225 0 0 0 chr12 78155129 78155154 -66127335 + (TA)n Simple_repeat Simple_repeat 2 26 0 547 159 38 0 chr12 78156503 78156635 -66125854 + (TA)n Simple_repeat Simple_repeat 1 137 0 311 261 34 11 chr12 78156940 78157028 -66125461 + L1MC4 LINE L1 6614 6703 -1339 246 156 47 0 chr12 78157034 78157098 -66125391 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 308 215 32 43 chr12 78157098 78157191 -66125298 + L1MC4 LINE L1 6612 6703 -1339 203 146 24 0 chr12 78157191 78157232 -66125257 + (TA)n Simple_repeat Simple_repeat 2 43 0 3529 217 66 32 chr12 78157413 78157725 -66124764 + L1MB7 LINE L1 4905 5205 -979 233 139 0 0 chr12 78157725 78157761 -66124728 - MLT2D LTR ERVL -376 38 3 3529 217 66 32 chr12 78157761 78158178 -66124311 + L1MB7 LINE L1 5205 5606 -578 1719 130 0 0 chr12 78158178 78158416 -66124073 - AluSg SINE Alu -17 293 56 3529 217 66 32 chr12 78158416 78158876 -66123613 + L1MB7 LINE L1 5606 6171 -13 1419 215 55 19 chr12 78158879 78159298 -66123191 + Charlie1b DNA MER1_type 87 520 -3 258 32 0 0 chr12 78160472 78160503 -66121986 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr12 78160795 78160820 -66121669 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 256 309 12 0 chr12 78161032 78161113 -66121376 + Charlie8 DNA MER1_type 151 232 -2185 2356 231 41 7 chr12 78161119 78161700 -66120789 + Charlie1a DNA MER1_type 7 607 -848 867 196 69 0 chr12 78161700 78161904 -66120585 + Charlie1a DNA MER1_type 758 975 -480 24 0 0 0 chr12 78162101 78162125 -66120364 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr12 78162195 78162230 -66120259 + AT_rich Low_complexity Low_complexity 1 35 0 2253 77 0 20 chr12 78162706 78163006 -66119483 - AluY SINE Alu -17 294 1 21 36 0 0 chr12 78163657 78163685 -66118804 + AT_rich Low_complexity Low_complexity 1 28 0 1464 207 0 37 chr12 78164133 78164457 -66118032 - AluJo SINE Alu 0 312 1 999 194 5 54 chr12 78164773 78164995 -66117494 - L1MC1 LINE L1 -21 6312 6102 1735 206 62 23 chr12 78165010 78165724 -66116765 - L1MC1 LINE L1 -650 5683 4927 4722 56 3 0 chr12 78165724 78166313 -66116176 + LTR10C LTR ERV1 1 591 0 1735 206 62 23 chr12 78166313 78166476 -66116013 - L1MC1 LINE L1 -1406 4927 4772 373 193 68 0 chr12 78166599 78166687 -66115802 - L1MC1 LINE L1 -1419 4727 4634 1142 196 14 25 chr12 78166690 78166975 -66115514 - L1MCa LINE L1 -2543 3883 3602 2915 215 28 52 chr12 78166991 78167595 -66114894 - L1MCa LINE L1 -3172 3254 2674 834 146 0 7 chr12 78167595 78167732 -66114757 - U8 snRNA snRNA 0 136 1 2915 215 28 52 chr12 78167732 78167949 -66114540 - L1MCa LINE L1 -3752 2674 2453 2362 85 0 10 chr12 78167977 78168282 -66114207 + AluSq SINE Alu 1 302 -11 21 0 0 0 chr12 78168499 78168520 -66113969 + AT_rich Low_complexity Low_complexity 1 21 0 1199 227 11 29 chr12 78168566 78168839 -66113650 - L1MCa LINE L1 -6125 301 34 1741 171 3 3 chr12 78168868 78169185 -66113304 + AluSx SINE Alu 1 317 0 189 74 0 0 chr12 78169186 78169213 -66113276 + (TA)n Simple_repeat Simple_repeat 1 27 0 25 0 0 0 chr12 78169331 78169356 -66113133 + AT_rich Low_complexity Low_complexity 1 25 0 302 266 90 62 chr12 78169637 78169926 -66112563 - L1MC1 LINE L1 -1553 4593 4297 1715 162 28 0 chr12 78170114 78170396 -66112093 + MER57A LTR ERV1 1 290 -113 2048 173 20 53 chr12 78170396 78170952 -66111537 - MER51A LTR ERV1 0 634 1 3833 166 11 52 chr12 78171021 78171802 -66110687 + MER57A-int LTR ERV1 82 830 -6707 265 205 0 103 chr12 78171915 78171993 -66110496 + MER57A-int LTR ERV1 3352 3421 -4116 418 234 175 7 chr12 78172038 78172175 -66110314 + MER34C LTR ERV1 158 317 -268 512 222 30 70 chr12 78172184 78172414 -66110075 + MER57A-int LTR ERV1 1834 2054 -4544 5063 103 0 14 chr12 78172459 78172599 -66109890 + LTR8 LTR ERV1 1 141 -550 1748 211 128 7 chr12 78172599 78173053 -66109436 + LTR22 LTR ERVK 1 509 0 5063 103 0 14 chr12 78173053 78173613 -66108876 + LTR8 LTR ERV1 141 691 0 516 282 7 13 chr12 78173624 78173773 -66108716 + MER57A-int LTR ERV1 3306 3453 -2878 572 210 152 43 chr12 78173887 78174437 -66108052 + MER57A-int LTR ERV1 1707 2337 -2599 859 194 44 110 chr12 78174495 78174860 -66107629 + MER57A-int LTR ERV1 4211 4551 -3569 2388 193 28 12 chr12 78174865 78175399 -66107090 - LTR27 LTR ERV1 -11 490 2 6010 180 8 16 chr12 78175399 78176562 -66105927 + MER57A-int LTR ERV1 4669 5821 -1716 1603 205 3 13 chr12 78176883 78177190 -66105299 + MER57A-int LTR ERV1 5825 6128 -1409 6055 204 17 6 chr12 78177366 78178564 -66103925 + MER57A-int LTR ERV1 5939 7149 -388 688 153 24 8 chr12 78178564 78178688 -66103801 + LTR54B LTR ERV1 6 131 -367 1244 160 23 39 chr12 78178692 78178796 -66103693 + MER57A-int LTR ERV1 7280 7384 -153 2245 124 25 25 chr12 78178796 78179160 -66103329 - THE1B LTR MaLR 0 364 1 1244 160 23 39 chr12 78179160 78179311 -66103178 + MER57A-int LTR ERV1 7384 7531 -6 2096 185 33 3 chr12 78179315 78179704 -66102785 + MER57A LTR ERV1 1 401 -2 4510 175 41 11 chr12 78180232 78181090 -66101399 + MER4D LTR ERV1 1 884 -19 180 0 0 0 chr12 78181090 78181110 -66101379 + (TTG)n Simple_repeat Simple_repeat 2 21 0 188 33 0 33 chr12 78182367 78182385 -66100104 + (TA)n Simple_repeat Simple_repeat 2 20 -10 2449 67 0 0 chr12 78182385 78182683 -66099806 - AluY SINE Alu -13 298 1 188 33 0 33 chr12 78182683 78182694 -66099795 + (TA)n Simple_repeat Simple_repeat 20 30 0 25 0 0 0 chr12 78182782 78182807 -66099682 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr12 78183028 78183061 -66099428 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr12 78184326 78184360 -66098129 + AT_rich Low_complexity Low_complexity 1 34 0 29 60 0 0 chr12 78184431 78184481 -66098008 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr12 78184797 78184818 -66097671 + AT_rich Low_complexity Low_complexity 1 21 0 1228 148 56 0 chr12 78185086 78185302 -66097187 - MER30 DNA MER1_type -2 228 1 22 35 0 0 chr12 78185553 78185582 -66096907 + AT_rich Low_complexity Low_complexity 1 29 0 1110 185 118 19 chr12 78185823 78186093 -66096396 - L1MD2 LINE L1 -3 6356 6060 338 111 0 6 chr12 78186487 78186543 -66095946 + Alu SINE Alu 236 282 -20 1401 92 5 0 chr12 78186685 78186881 -66095608 - L1PA10 LINE L1 -187 5981 5785 756 172 0 0 chr12 78186881 78187007 -66095482 + L1PA10 LINE L1 6029 6156 -12 37 76 0 0 chr12 78188064 78188143 -66094346 + AT_rich Low_complexity Low_complexity 1 79 0 684 159 0 9 chr12 78188835 78188942 -66093547 + AluSq/x SINE Alu 25 130 -182 11186 158 25 46 chr12 78188954 78191092 -66091397 - Tigger1 DNA MER2_type -316 2102 9 358 274 105 16 chr12 78191116 78191306 -66091183 - L1MEd LINE L1 -1656 4726 4520 201 74 0 0 chr12 78191508 78191535 -66090954 + (T)n Simple_repeat Simple_repeat 1 27 0 245 182 0 15 chr12 78191846 78191912 -66090577 + (TA)n Simple_repeat Simple_repeat 1 65 0 180 0 0 0 chr12 78191983 78192003 -66090486 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3373 252 68 22 chr12 78192003 78194200 -66088289 - L1MEd LINE L1 -2485 3897 1548 267 319 26 9 chr12 78194354 78194467 -66088022 - L2 LINE L2 0 3313 3199 5483 173 39 50 chr12 78194647 78195377 -66087112 - L1MA6 LINE L1 -1 6299 5562 1930 158 17 0 chr12 78195377 78195668 -66086821 - AluSx SINE Alu -16 296 1 5483 173 39 50 chr12 78195668 78196154 -66086335 - L1MA6 LINE L1 -738 5562 5072 182 61 0 30 chr12 78196154 78196187 -66086302 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 5483 173 39 50 chr12 78196187 78196853 -66085636 - L1MA6 LINE L1 -1228 5072 4437 2054 136 42 31 chr12 78196853 78197213 -66085276 + THE1B LTR MaLR 1 364 0 5483 173 39 50 chr12 78197213 78197272 -66085217 - L1MA6 LINE L1 -1863 4437 4379 1687 167 13 6 chr12 78197272 78197590 -66084899 + L1MA6 LINE L1 4092 4411 -1735 355 352 80 28 chr12 78197593 78197843 -66084646 - L1MEd LINE L1 -5704 668 406 21 0 0 0 chr12 78198024 78198045 -66084444 + AT_rich Low_complexity Low_complexity 1 21 0 1593 260 51 54 chr12 78200594 78201187 -66081302 - MLT1E LTR MaLR -2 591 1 438 187 20 108 chr12 78201439 78201642 -66080847 + MER53 DNA DNA 3 187 -2 196 233 83 0 chr12 78201652 78201712 -66080777 - MIR SINE MIR -61 201 137 380 310 158 36 chr12 78202908 78203269 -66079220 - MLT1I LTR MaLR 0 409 5 1562 145 65 101 chr12 78203840 78204227 -66078262 + THE1C LTR MaLR 1 373 -2 9737 133 36 9 chr12 78204233 78205768 -66076721 + THE1C-int LTR MaLR 5 1580 0 1722 128 111 20 chr12 78205768 78206112 -66076377 + THE1C LTR MaLR 1 375 0 2338 160 45 55 chr12 78206189 78206696 -66075793 - L1MA5A LINE L1 -14 6985 6484 348 164 34 48 chr12 78206696 78206842 -66075647 + (TA)n Simple_repeat Simple_repeat 1 144 0 207 0 0 0 chr12 78206842 78206865 -66075624 + (TG)n Simple_repeat Simple_repeat 2 24 0 7910 178 48 35 chr12 78206865 78209271 -66073218 - L1MA5A LINE L1 -511 6488 4049 3795 211 18 25 chr12 78209257 78210187 -66072302 - L1MA5A LINE L1 -3727 3121 2198 * 1839 156 3 3 chr12 78210187 78210498 -66071991 - AluSq SINE Alu 0 313 3 3795 211 18 25 chr12 78210498 78210735 -66071754 - L1MA5A LINE L1 -4650 2198 1961 31 0 0 0 chr12 78211048 78211079 -66071410 + AT_rich Low_complexity Low_complexity 1 31 0 387 352 103 9 chr12 78211416 78211649 -66070840 + MIR SINE MIR 5 259 -3 489 342 44 15 chr12 78212202 78212474 -66070015 - L1M4 LINE L1 -2969 3177 2898 393 301 90 6 chr12 78212495 78212661 -66069828 + LTR50 LTR ERVL 460 639 -156 511 347 53 51 chr12 78212669 78213900 -66068589 + HERVL LTR ERVL 441 1725 -3929 1064 328 59 52 chr12 78214112 78214885 -66067604 + HERVL LTR ERVL 2179 2962 -2802 1204 76 0 0 chr12 78214885 78215043 -66067446 + L1PA8 LINE L1 6012 6169 -3 1064 328 59 52 chr12 78215043 78215258 -66067231 + HERVL LTR ERVL 2962 3174 -2590 1715 331 43 25 chr12 78215474 78217314 -66065175 + HERVL LTR ERVL 3219 5157 -607 286 316 0 0 chr12 78217426 78217524 -66064965 + HERVL LTR ERVL 5309 5406 -358 710 214 8 0 chr12 78217761 78217892 -66064597 - FLAM_C SINE Alu -1 132 1 1771 162 0 35 chr12 78217965 78218280 -66064209 - AluJo SINE Alu -8 304 1 1136 314 75 15 chr12 78218281 78218845 -66063644 - L1MCb LINE L1 -4972 1073 691 2184 143 81 44 chr12 78218850 78219375 -66063114 - LTR35 LTR ERV1 0 618 1 362 241 71 0 chr12 78219378 78219490 -66062999 - L1MCb LINE L1 -5371 674 555 243 0 0 0 chr12 78219498 78219525 -66062964 + (TC)n Simple_repeat Simple_repeat 2 28 0 1447 278 17 61 chr12 78219609 78220200 -66062289 - L1MCb LINE L1 -5480 565 1 497 315 76 32 chr12 78221041 78221292 -66061197 - L2 LINE L2 -6 3307 3046 22 35 0 0 chr12 78221725 78221754 -66060735 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr12 78222177 78222213 -66060276 + AT_rich Low_complexity Low_complexity 1 36 0 1608 237 0 16 chr12 78222243 78222614 -66059875 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr12 78222637 78222658 -66059831 + AT_rich Low_complexity Low_complexity 1 21 0 225 284 80 23 chr12 78222752 78222840 -66059649 - L2 LINE L2 0 3272 3180 230 341 57 16 chr12 78223824 78223947 -66058542 + MIR SINE MIR 78 205 -57 1657 178 57 33 chr12 78223961 78224327 -66058162 - THE1C LTR MaLR 0 375 1 6867 177 63 37 chr12 78224332 78225865 -66056624 - THE1C-int LTR MaLR -5 1575 4 1596 196 50 17 chr12 78225868 78226226 -66056263 - THE1C LTR MaLR 0 375 6 2060 182 35 40 chr12 78226226 78226378 -66056111 - MSTA LTR MaLR -2 426 275 2496 74 0 6 chr12 78226378 78226689 -66055800 + AluY SINE Alu 1 309 -2 2060 182 35 40 chr12 78226689 78226964 -66055525 - MSTA LTR MaLR -153 275 1 378 328 23 47 chr12 78227122 78227293 -66055196 + MLT1H LTR MaLR 113 279 -270 1657 307 176 38 chr12 78227299 78228074 -66054415 - L2 LINE L2 -835 2479 1813 189 0 0 0 chr12 78228074 78228095 -66054394 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1657 307 176 38 chr12 78228095 78228280 -66054209 - L2 LINE L2 -1501 1813 1655 359 0 43 0 chr12 78228280 78228326 -66054163 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 1657 307 176 38 chr12 78228326 78228583 -66053906 - L2 LINE L2 -1659 1655 1092 1253 161 0 0 chr12 78228606 78228799 -66053690 + THE1C LTR MaLR 1 193 -182 272 155 52 17 chr12 78228788 78228846 -66053643 + THE1C LTR MaLR 296 355 0 * 2724 134 0 0 chr12 78228846 78229256 -66053233 + THE1C-int LTR MaLR 1 410 -1170 2715 108 27 15 chr12 78229256 78229662 -66052827 + MLT2A1 LTR ERVL 1 411 -33 228 75 38 38 chr12 78229662 78229715 -66052774 + (TA)n Simple_repeat Simple_repeat 1 53 0 262 135 19 0 chr12 78229723 78229775 -66052714 + MLT2A1 LTR ERVL 397 449 -4 42673 79 10 10 chr12 78229779 78230916 -66051573 + HERVL-A1-A1 LTR ERVL 1 1136 -4518 1873 100 3 112 chr12 78230916 78231246 -66051243 + AluSp SINE Alu 1 294 -19 42673 79 10 10 chr12 78231246 78235760 -66046729 + HERVL-A1-A1 LTR ERVL 1136 5654 0 795 99 0 0 chr12 78235764 78235875 -66046614 + MLT2A1 LTR ERVL 5 115 -329 308 64 21 0 chr12 78235875 78235922 -66046567 + (TA)n Simple_repeat Simple_repeat 2 49 0 301 285 0 25 chr12 78235934 78236092 -66046397 + (TA)n Simple_repeat Simple_repeat 2 155 0 283 262 6 30 chr12 78236105 78236273 -66046216 + (TA)n Simple_repeat Simple_repeat 2 165 0 219 36 0 0 chr12 78236286 78236314 -66046175 + (TA)n Simple_repeat Simple_repeat 2 29 0 260 304 0 0 chr12 78236360 78236462 -66046027 + (TA)n Simple_repeat Simple_repeat 2 103 0 309 48 24 0 chr12 78236467 78236509 -66045980 - HERVL LTR ERVL -829 4825 4783 * 532 120 0 0 chr12 78236508 78236583 -66045906 - HERVL LTR ERVL -795 4859 4785 510 93 10 21 chr12 78236583 78236680 -66045809 + (TA)n Simple_repeat Simple_repeat 2 97 0 716 57 86 9 chr12 78236680 78236785 -66045704 - MLT2A1 LTR ERVL -329 115 3 370 79 0 95 chr12 78236834 78236897 -66045592 + MLT2A2 LTR ERVL 403 453 0 769 78 9 9 chr12 78236939 78237055 -66045434 + THE1C-int LTR MaLR 1461 1576 -4 2032 162 14 8 chr12 78237059 78237418 -66045071 + THE1C LTR MaLR 1 361 -14 244 316 95 11 chr12 78237587 78237682 -66044807 - MLT1I LTR MaLR -201 208 106 183 409 0 0 chr12 78237762 78237855 -66044634 - L2 LINE L2 -2205 1109 1017 278 295 191 19 chr12 78238458 78238668 -66043821 - L2 LINE L2 -2982 332 87 480 298 132 15 chr12 78239018 78239223 -66043266 + MIR SINE MIR 5 233 -29 330 26 0 0 chr12 78239952 78239991 -66042498 + (TA)n Simple_repeat Simple_repeat 2 40 0 232 278 13 26 chr12 78240076 78240227 -66042262 + T-rich Low_complexity Low_complexity 3 151 0 216 243 165 19 chr12 78240776 78240879 -66041610 + MIR SINE MIR 6 123 -139 28 0 0 0 chr12 78240980 78241008 -66041481 + AT_rich Low_complexity Low_complexity 1 28 0 232 374 109 9 chr12 78241223 78241434 -66041055 + MIR SINE MIR 31 262 0 747 299 61 40 chr12 78243067 78243445 -66039044 - MLT1J1 LTR MaLR -53 393 8 23 33 0 0 chr12 78244586 78244616 -66037873 + AT_rich Low_complexity Low_complexity 1 30 0 192 212 106 0 chr12 78244755 78244821 -66037668 + MER5C DNA MER1_type 45 117 -207 227 121 0 0 chr12 78244906 78244939 -66037550 + MER5C DNA MER1_type 287 319 -5 2123 111 21 0 chr12 78245071 78245359 -66037130 + AluSx SINE Alu 1 294 -18 236 414 15 0 chr12 78245364 78245497 -66036992 + L2 LINE L2 202 336 -2978 202 129 86 14 chr12 78245635 78245705 -66036784 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1147 342 118 26 chr12 78245865 78247003 -66035486 + L2 LINE L2 1946 3191 -122 21 0 0 0 chr12 78247343 78247364 -66035125 + AT_rich Low_complexity Low_complexity 1 21 0 3948 155 27 16 chr12 78247401 78248174 -66034315 - L1MA5 LINE L1 0 6300 5519 2038 140 0 0 chr12 78249299 78249592 -66032897 + AluSx SINE Alu 1 293 -19 719 252 78 19 chr12 78249783 78250041 -66032448 - Zaphod DNA AcHobo -30 4001 3729 3054 84 27 2 chr12 78250044 78250485 -66032004 - L1PA7 LINE L1 -1102 5044 4593 6833 64 6 11 chr12 78250485 78251585 -66030904 + L1PA7 LINE L1 5057 6154 0 576 225 48 21 chr12 78251626 78251813 -66030676 - Zaphod DNA AcHobo -364 3667 3476 4106 202 44 13 chr12 78301831 78302902 -65979587 - L1 LINE L1 -2071 4075 2972 1469 186 45 3 chr12 78303005 78303317 -65979172 + L1P3 LINE L1 179 503 -5372 3186 223 19 52 chr12 78303322 78304704 -65977785 + L1P3 LINE L1 771 2111 -4350 210 247 376 0 chr12 78305632 78305725 -65976764 - MIR SINE MIR -54 208 81 260 239 109 0 chr12 78305965 78306057 -65976432 + L1MA9 LINE L1 6172 6273 -39 1360 192 18 66 chr12 78306143 78306476 -65976013 + MLT1A1 LTR MaLR 1 317 -48 26 30 0 0 chr12 78306556 78306589 -65975900 + AT_rich Low_complexity Low_complexity 1 33 0 314 290 56 51 chr12 78306677 78306891 -65975598 + L2 LINE L2 3083 3297 -16 2153 120 7 0 chr12 78307313 78307614 -65974875 + AluSx SINE Alu 5 307 -5 753 199 0 14 chr12 78308237 78308378 -65974111 - FAM SINE Alu -27 158 20 275 290 177 32 chr12 78308472 78308596 -65973893 - L2 LINE L2 -27 3245 3104 1133 186 19 0 chr12 78309349 78309564 -65972925 + MER58A DNA MER1_type 2 220 -4 203 245 19 0 chr12 78309829 78309882 -65972607 - MIR SINE MIR -72 136 83 1728 147 47 61 chr12 78310227 78310587 -65971902 - THE1B LTR MaLR 0 364 10 735 261 68 0 chr12 78310836 78310974 -65971515 + MLT1A1 LTR MaLR 335 462 -93 564 42 0 0 chr12 78310974 78311045 -65971444 + (AGTAG)n Simple_repeat Simple_repeat 2 72 0 1135 43 0 49 chr12 78311048 78311232 -65971257 + (AATAG)n Simple_repeat Simple_repeat 4 178 0 735 261 68 0 chr12 78311232 78311296 -65971193 + MLT1A1 LTR MaLR 463 555 0 274 354 66 46 chr12 78311503 78311896 -65970593 - MLT1J2 LTR MaLR -13 437 37 306 287 61 9 chr12 78312189 78312304 -65970185 + MIR SINE MIR 49 169 -93 257 356 6 25 chr12 78312402 78312562 -65969927 - MER117 DNA MER1_type -36 161 5 6268 40 26 0 chr12 78312745 78313510 -65968979 + L1PA5 LINE L1 5362 6146 -8 28 29 0 0 chr12 78313510 78313545 -65968944 + AT_rich Low_complexity Low_complexity 1 35 0 232 371 142 20 chr12 78314764 78315017 -65967472 - L3 LINE CR1 -15 1562 1279 584 154 68 17 chr12 78316550 78316667 -65965822 - AluJb SINE Alu -23 289 167 7792 138 29 27 chr12 78317269 78318896 -65963593 + L1M1 LINE L1 2079 3708 -3857 2105 108 10 3 chr12 78319135 78319430 -65963059 - AluSg SINE Alu -13 297 1 293 299 103 0 chr12 78320623 78320730 -65961759 - MIR SINE MIR -54 208 91 204 40 0 0 chr12 78321245 78321270 -65961219 + (CA)n Simple_repeat Simple_repeat 2 26 0 201 341 12 24 chr12 78321812 78321897 -65960592 + L2 LINE L2 3209 3292 -21 611 236 56 15 chr12 78322269 78322464 -65960025 + L1M3 LINE L1 5434 5636 -547 560 169 88 7 chr12 78322472 78322608 -65959881 + MLT1A1 LTR MaLR 2 148 -217 315 0 0 0 chr12 78323095 78323130 -65959359 + (CA)n Simple_repeat Simple_repeat 1 35 0 353 171 0 0 chr12 78323266 78323336 -65959153 + CT-rich Low_complexity Low_complexity 1 70 0 1948 171 3 3 chr12 78323336 78323646 -65958843 - AluJb SINE Alu -2 310 1 189 245 38 0 chr12 78324155 78324208 -65958281 + MIR SINE MIR 195 249 -13 323 155 0 28 chr12 78324264 78324284 -65958205 + (TAA)n Simple_repeat Simple_repeat 3 22 -49 2023 119 0 7 chr12 78324284 78324569 -65957920 + AluSg SINE Alu 1 283 -27 323 155 0 28 chr12 78324569 78324619 -65957870 + (TAA)n Simple_repeat Simple_repeat 22 71 0 848 229 45 5 chr12 78324905 78325106 -65957383 + MER63A DNA MER1_type 1 209 -1 292 285 85 31 chr12 78325243 78325373 -65957116 + MIR SINE MIR 120 256 -6 555 192 60 36 chr12 78326090 78326257 -65956232 + L1MB3 LINE L1 5969 6139 -44 361 293 60 12 chr12 78326367 78326570 -65955919 + L1M4 LINE L1 2217 2429 -3717 1180 262 101 5 chr12 78326636 78327282 -65955207 + L1M1 LINE L1 3952 4659 -2906 487 329 116 17 chr12 78327396 78327697 -65954792 + L1M1 LINE L1 4904 5234 -2331 2480 57 3 0 chr12 78327797 78328111 -65954378 + L1PA7 LINE L1 5839 6153 -1 204 111 0 0 chr12 78328297 78328333 -65954156 + (T)n Simple_repeat Simple_repeat 1 36 0 2483 59 0 0 chr12 78328529 78328836 -65953653 + AluY SINE Alu 1 307 -4 2323 59 3 0 chr12 78329394 78329680 -65952809 + AluY SINE Alu 1 287 -24 1814 186 28 14 chr12 78330645 78331005 -65951484 + MLT1A1 LTR MaLR 1 365 0 2136 172 23 30 chr12 78331049 78331486 -65951003 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr12 78331736 78331758 -65950731 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr12 78332024 78332052 -65950437 + AT_rich Low_complexity Low_complexity 1 28 0 193 284 0 45 chr12 78332273 78332340 -65950149 - L2 LINE L2 -1481 1833 1770 269 290 136 85 chr12 78332350 78332644 -65949845 - L2 LINE L2 -550 2764 2438 2178 129 10 44 chr12 78332644 78333032 -65949457 + THE1C LTR MaLR 1 375 0 269 290 136 85 chr12 78333032 78333185 -65949304 - L2 LINE L2 -876 2438 2294 339 307 133 8 chr12 78333295 78333536 -65948953 - MLT1I LTR MaLR -51 358 88 728 79 0 0 chr12 78334510 78334611 -65947878 - AluSp/q SINE Alu -17 296 196 2426 77 0 7 chr12 78334611 78334921 -65947568 - AluY SINE Alu -3 308 1 379 331 22 34 chr12 78335151 78335329 -65947160 - MIR3 SINE MIR -13 195 20 195 283 0 0 chr12 78335442 78335541 -65946948 + CT-rich Low_complexity Low_complexity 3 101 0 2262 176 28 16 chr12 78335608 78336035 -65946454 - MSTB1 LTR MaLR 0 432 1 1133 200 119 13 chr12 78336646 78336956 -65945533 - MER2 DNA MER2_type -1 343 1 182 307 89 50 chr12 78338538 78338639 -65943850 - L2 LINE L2 -12 3301 3197 896 213 4 88 chr12 78338647 78338886 -65943603 + MER20 DNA MER1_type 1 219 0 414 229 57 9 chr12 78339523 78339628 -65942861 + MIR3 SINE MIR 81 190 -18 349 242 15 106 chr12 78340624 78340718 -65941771 - MER5A DNA MER1_type -49 140 60 2498 59 0 0 chr12 78340718 78341022 -65941467 + AluYa5 SINE Alu 1 304 -7 349 242 15 106 chr12 78341022 78341059 -65941430 - MER5A DNA MER1_type -129 60 21 209 200 22 0 chr12 78341531 78341576 -65940913 + (CA)n Simple_repeat Simple_repeat 1 46 0 354 308 28 47 chr12 78341576 78341790 -65940699 + MIR SINE MIR 53 262 0 216 381 0 0 chr12 78342000 78342084 -65940405 + MIR SINE MIR 2 85 -177 1460 240 20 0 chr12 78342084 78342434 -65940055 + MLT1A1 LTR MaLR 1 357 -8 485 282 11 48 chr12 78342439 78342506 -65939983 + MIR SINE MIR 82 150 -112 2839 19 0 0 chr12 78342506 78342820 -65939669 + AluYb8 SINE Alu 1 314 -4 485 282 11 48 chr12 78342820 78342940 -65939549 + MIR SINE MIR 150 262 0 281 281 73 0 chr12 78343113 78343195 -65939294 - MER81 DNA DNA -1 113 26 312 135 0 0 chr12 78344053 78344105 -65938384 + MADE1 DNA Mariner 2 53 -27 283 164 0 36 chr12 78344364 78344419 -65938070 + MLT1K LTR MaLR 433 485 -103 718 283 116 28 chr12 78344610 78344971 -65937518 - MLT1H LTR MaLR -5 544 152 363 44 0 0 chr12 78346623 78346668 -65935821 + (GA)n Simple_repeat Simple_repeat 1 45 0 2832 197 14 6 chr12 78346897 78347542 -65934947 - L1P LINE L1 -1081 5065 4416 244 353 82 0 chr12 78347665 78347787 -65934702 - MIR SINE MIR -87 175 44 377 297 32 30 chr12 78349121 78349325 -65933164 + MIR SINE MIR 44 249 -13 216 0 0 0 chr12 78349634 78349658 -65932831 + (TAA)n Simple_repeat Simple_repeat 2 25 0 343 265 15 8 chr12 78349765 78349897 -65932592 + (TA)n Simple_repeat Simple_repeat 2 134 0 3730 172 8 13 chr12 78349919 78350622 -65931867 - MER50 LTR ERV1 -34 700 1 257 386 33 11 chr12 78350793 78350977 -65931512 + MIR SINE MIR 75 262 0 1163 282 56 32 chr12 78352897 78353433 -65929056 - MLT1H LTR MaLR 0 549 1 204 67 0 0 chr12 78353817 78353847 -65928642 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 376 265 135 35 chr12 78353917 78354087 -65928402 - MIR3 SINE MIR -19 189 3 219 69 0 0 chr12 78354608 78354637 -65927852 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 280 336 48 0 chr12 78354655 78354759 -65927730 - MIR SINE MIR -60 148 40 214 393 28 9 chr12 78355654 78355761 -65926728 + MIR3 SINE MIR 65 173 -35 267 152 0 0 chr12 78356199 78356245 -65926244 + (CA)n Simple_repeat Simple_repeat 2 47 0 2194 163 53 5 chr12 78356245 78356643 -65925846 - MSTB LTR MaLR -2 424 8 304 192 144 0 chr12 78356727 78356831 -65925658 + MER103 DNA DNA 41 159 -7 641 381 29 0 chr12 78358633 78358911 -65923578 + L2 LINE L2 2624 2909 -405 424 271 17 97 chr12 78358946 78359245 -65923244 - L2 LINE L2 0 3313 3039 * 669 309 87 22 chr12 78359238 78359594 -65922895 + L2 LINE L2 2917 3295 -18 652 101 10 100 chr12 78359670 78359829 -65922660 - THE1A LTR MaLR 0 355 211 323 272 148 19 chr12 78360018 78360180 -65922309 + MIR SINE MIR 9 191 -71 306 50 0 0 chr12 78360221 78360261 -65922228 + (TG)n Simple_repeat Simple_repeat 2 41 0 3136 190 19 20 chr12 78360262 78361412 -65921077 - L1M2 LINE L1 -563 5749 4590 852 160 120 73 chr12 78361402 78361673 -65920816 + L1MA9 LINE L1 5844 6101 -211 * 261 0 0 0 chr12 78361673 78361702 -65920787 + (CA)n Simple_repeat Simple_repeat 2 30 0 852 160 120 73 chr12 78361702 78361768 -65920721 + L1MA9 LINE L1 6101 6162 -150 1850 152 19 19 chr12 78361768 78362077 -65920412 + AluJb SINE Alu 1 309 -3 852 160 120 73 chr12 78362077 78362175 -65920314 + L1MA9 LINE L1 6162 6312 0 203 244 0 0 chr12 78362300 78362341 -65920148 + L2 LINE L2 3216 3256 -16 334 323 31 8 chr12 78363586 78363713 -65918776 - MIR SINE MIR -114 148 19 269 288 137 35 chr12 78363740 78363966 -65918523 + MIR SINE MIR 8 256 -6 212 336 47 28 chr12 78364056 78364163 -65918326 + L2 LINE L2 3164 3272 0 265 350 108 10 chr12 78365092 78365286 -65917203 + MIR SINE MIR 39 251 -11 436 239 63 28 chr12 78365541 78365683 -65916806 + MIR SINE MIR 59 205 -57 1252 132 9 14 chr12 78365798 78366010 -65916479 + L1PA8 LINE L1 5957 6167 -5 485 299 62 47 chr12 78366020 78366488 -65916001 + L1M4 LINE L1 3846 4320 -1826 2149 110 25 0 chr12 78366492 78366819 -65915670 - L1PA13 LINE L1 -4 6159 5825 1160 181 73 5 chr12 78366819 78367161 -65915328 - L1PA13 LINE L1 -734 5434 5064 3144 170 49 2 chr12 78367175 78367474 -65915015 + L1P LINE L1 4379 4662 -1484 221 0 35 0 chr12 78367474 78367503 -65914986 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3144 170 49 2 chr12 78367503 78367837 -65914652 + L1P LINE L1 4662 5042 -1104 2217 91 0 7 chr12 78367839 78368125 -65914364 - AluSc SINE Alu -10 299 16 246 284 77 14 chr12 78368131 78368353 -65914136 + L1M4 LINE L1 4327 4562 -1584 1121 253 103 56 chr12 78368362 78369054 -65913435 + L1ME LINE L1 4457 5196 -950 2669 120 12 0 chr12 78369054 78369463 -65913026 - L1PA13 LINE L1 -19 6144 5731 1121 253 103 56 chr12 78369463 78369603 -65912886 + L1ME LINE L1 5196 5328 -818 1050 261 41 3 chr12 78369647 78369961 -65912528 + L1ME LINE L1 5431 5756 -408 18074 88 8 8 chr12 78370124 78372682 -65909807 - HERVL LTR ERVL -892 4762 2205 471 48 0 0 chr12 78372668 78372731 -65909758 + HERVL LTR ERVL 2541 2603 -3051 * 1373 80 0 80 chr12 78372739 78372963 -65909526 - HERVL LTR ERVL -3447 2207 2002 927 202 147 34 chr12 78373077 78373422 -65909067 - LTR2B LTR ERV1 -90 390 1 14232 96 5 0 chr12 78373422 78375473 -65907016 - Harlequin LTR ERV1 0 6896 4836 329 204 0 10 chr12 78377077 78377175 -65905314 + (TA)n Simple_repeat Simple_repeat 2 98 0 22 56 0 0 chr12 78377657 78377693 -65904796 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr12 78378003 78378034 -65904455 + AT_rich Low_complexity Low_complexity 1 31 0 5263 104 106 33 chr12 78378723 78379811 -65902678 - MER11A LTR ERVK 0 1266 1 467 171 26 122 chr12 78380730 78380948 -65901541 + MLT1B LTR MaLR 1 174 -191 230 79 0 26 chr12 78380950 78380988 -65901501 + (TC)n Simple_repeat Simple_repeat 2 38 0 830 233 52 0 chr12 78381004 78381197 -65901292 + MLT1B LTR MaLR 188 390 0 204 97 0 0 chr12 78381212 78381243 -65901246 + (CAATT)n Simple_repeat Simple_repeat 3 33 0 1658 298 145 31 chr12 78381243 78382139 -65900350 - L2 LINE L2 -17 3296 2503 2247 125 19 19 chr12 78382139 78382514 -65899975 - THE1C LTR MaLR 0 375 1 9408 128 52 7 chr12 78382515 78384027 -65898462 - THE1C-int LTR MaLR -1 1579 1 2313 129 16 11 chr12 78384027 78384400 -65898089 - THE1C LTR MaLR 0 375 1 1658 298 145 31 chr12 78384400 78384838 -65897651 - L2 LINE L2 -809 2504 1805 22 35 0 0 chr12 78385631 78385660 -65896829 + AT_rich Low_complexity Low_complexity 1 29 0 419 344 0 16 chr12 78386316 78386499 -65895990 + G-rich Low_complexity Low_complexity 1 180 0 49 34 0 34 chr12 78388688 78388777 -65893712 + AT_rich Low_complexity Low_complexity 1 86 0 3546 241 61 47 chr12 78389719 78391851 -65890638 + L1M2a LINE L1 1982 3879 -3686 1907 146 7 0 chr12 78391851 78392145 -65890344 - AluSx SINE Alu -16 296 1 3546 241 61 47 chr12 78392145 78392960 -65889529 + L1M2a LINE L1 3879 4681 -2884 602 155 17 0 chr12 78392971 78393087 -65889402 + L1M2a LINE L1 5664 5781 -1784 * 1294 129 18 5 chr12 78393083 78393307 -65889182 + L1MA8 LINE L1 6028 6254 -37 1775 183 6 6 chr12 78393958 78394270 -65888219 - AluSx SINE Alu 0 312 1 27 0 0 0 chr12 78394280 78394307 -65888182 + AT_rich Low_complexity Low_complexity 1 27 0 240 86 0 0 chr12 78394338 78394373 -65888116 + (TA)n Simple_repeat Simple_repeat 1 35 0 2137 105 3 3 chr12 78394649 78394945 -65887544 + AluSq SINE Alu 5 300 -13 28 29 0 0 chr12 78395239 78395274 -65887215 + AT_rich Low_complexity Low_complexity 1 35 0 2774 157 50 10 chr12 78395332 78395834 -65886655 + L1PA16 LINE L1 5637 6158 -8 43 0 0 0 chr12 78395959 78396002 -65886487 + AT_rich Low_complexity Low_complexity 1 43 0 374 395 38 5 chr12 78396227 78396437 -65886052 - MIR SINE MIR -25 237 21 3825 108 33 5 chr12 78398696 78399278 -65883211 - L1PA10 LINE L1 0 6168 5571 830 155 1 7 chr12 78399278 78399437 -65883052 + L1P4 LINE L1 5450 5606 -578 855 240 103 115 chr12 78400149 78401304 -65881185 + L1MC5 LINE L1 6414 7537 -424 310 289 92 50 chr12 78401476 78401715 -65880774 - L1ME4a LINE L1 -178 5943 5695 27 49 0 0 chr12 78401931 78401972 -65880517 + AT_rich Low_complexity Low_complexity 1 41 0 39 0 0 0 chr12 78402387 78402426 -65880063 + AT_rich Low_complexity Low_complexity 1 39 0 821 339 93 23 chr12 78402628 78403100 -65879389 + L2 LINE L2 2808 3312 -1 318 164 60 0 chr12 78403473 78403540 -65878949 + LTR41 LTR ERVL 700 770 -3 475 263 44 40 chr12 78403545 78403796 -65878693 + L1M4 LINE L1 4377 4628 -1518 273 246 29 120 chr12 78403800 78404109 -65878380 - L1M4 LINE L1 -2751 3395 3115 * 868 280 11 4 chr12 78404106 78404374 -65878115 - L1ME4a LINE L1 -1314 4832 4563 2022 113 20 87 chr12 78404375 78404765 -65877724 - THE1B LTR MaLR 0 364 1 1295 75 5 11 chr12 78404765 78404952 -65877537 - THE1B-int LTR MaLR 0 1580 1395 1784 239 67 28 chr12 78405053 78405364 -65877125 + L1ME3 LINE L1 1335 1632 -4924 2486 211 36 36 chr12 78405364 78405918 -65876571 + MLT2B3 LTR ERVL 1 554 0 1784 239 67 28 chr12 78405918 78406681 -65875808 + L1ME3 LINE L1 1632 6224 -332 591 292 50 11 chr12 78406741 78407001 -65875488 + L1ME3 LINE L1 6192 6461 -95 967 185 17 6 chr12 78407106 78407284 -65875205 + AluJb SINE Alu 120 299 -13 31 0 0 0 chr12 78407747 78407778 -65874711 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr12 78409004 78409026 -65873463 + AT_rich Low_complexity Low_complexity 1 22 0 252 281 123 0 chr12 78409217 78409363 -65873126 + MER103 DNA DNA 3 166 0 22 0 0 0 chr12 78411454 78411476 -65871013 + AT_rich Low_complexity Low_complexity 1 22 0 620 182 0 0 chr12 78412078 78412188 -65870301 + FRAM SINE Alu 1 110 -66 583 311 53 10 chr12 78412412 78412621 -65869868 - MIR SINE MIR -14 248 31 379 307 78 90 chr12 78413022 78413455 -65869034 - L2 LINE L2 -2 3311 2884 410 254 143 8 chr12 78413470 78413596 -65868893 - MER45 DNA AcHobo -897 143 1 819 264 19 14 chr12 78413635 78413851 -65868638 - L2 LINE L2 -468 2846 2630 1919 116 7 0 chr12 78415429 78415705 -65866784 + AluSg SINE Alu 20 297 -13 2757 68 0 0 chr12 78415881 78416235 -65866254 + L1PA8 LINE L1 5814 6167 -5 25 31 0 0 chr12 78416330 78416362 -65866127 + AT_rich Low_complexity Low_complexity 1 32 0 237 324 73 45 chr12 78416672 78416851 -65865638 + HAL1b LINE L1 339 522 -826 343 277 109 4 chr12 78416911 78417149 -65865340 + Charlie2 DNA MER1_type 2556 2818 -44 2138 59 0 11 chr12 78417797 78418067 -65864422 - AluY SINE Alu -4 307 41 22 70 0 0 chr12 78418525 78418568 -65863921 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr12 78420057 78420094 -65862395 + AT_rich Low_complexity Low_complexity 1 37 0 481 270 57 40 chr12 78420512 78420541 -65861948 + L1MEc LINE L1 1791 1818 -4578 2174 108 65 3 chr12 78420541 78420894 -65861595 - THE1C LTR MaLR 0 375 1 481 270 57 40 chr12 78420894 78421160 -65861329 + L1MEc LINE L1 1818 2091 -4305 661 254 6 23 chr12 78421271 78421448 -65861041 + AluJo SINE Alu 1 174 -138 445 245 10 0 chr12 78421456 78421558 -65860931 - L1M4 LINE L1 -2299 3847 3745 297 157 41 8 chr12 78421634 78421755 -65860734 + (TA)n Simple_repeat Simple_repeat 2 126 0 308 169 45 39 chr12 78421768 78421922 -65860567 + (TA)n Simple_repeat Simple_repeat 2 156 0 774 196 7 0 chr12 78421923 78422061 -65860428 - AluJb SINE Alu -22 290 152 1614 258 57 23 chr12 78422129 78422831 -65859658 - L1M4 LINE L1 -2437 3709 2984 918 272 110 52 chr12 78422830 78423745 -65858744 + L1ME LINE L1 4788 5761 -403 * 242 271 0 17 chr12 78423737 78423796 -65858693 + L1MC4 LINE L1 6491 6548 -1494 * 1027 264 71 30 chr12 78423804 78424198 -65858291 + L1MC4 LINE L1 6755 7164 -878 1193 262 62 67 chr12 78424263 78424827 -65857662 + L1MCb LINE L1 5 565 -5480 4829 138 6 39 chr12 78424844 78425699 -65856790 + L1PA16 LINE L1 5340 6166 0 1496 221 155 79 chr12 78425803 78426894 -65855595 + L1MCb LINE L1 558 1744 -4820 239 286 57 9 chr12 78426917 78427022 -65855467 + L1MC4 LINE L1 7927 8036 -6 22 0 0 0 chr12 78428233 78428255 -65854234 + AT_rich Low_complexity Low_complexity 1 22 0 197 309 0 0 chr12 78428318 78428360 -65854129 + L2 LINE L2 3193 3234 -38 3596 168 18 2 chr12 78428965 78429828 -65852661 + L1P4 LINE L1 4615 5489 -677 1219 82 0 60 chr12 78431049 78431231 -65851258 - AluSq SINE Alu -142 171 1 361 192 0 0 chr12 78431583 78431656 -65850833 - L1P4 LINE L1 -457 5709 5637 28 29 0 0 chr12 78431963 78431998 -65850491 + AT_rich Low_complexity Low_complexity 1 35 0 351 105 0 0 chr12 78432447 78432504 -65849985 + (TG)n Simple_repeat Simple_repeat 1 57 0 186 103 0 0 chr12 78432812 78432841 -65849648 + (TTTTTA)n Simple_repeat Simple_repeat 3 31 0 4122 140 17 31 chr12 78432844 78433589 -65848900 - L1PA16 LINE L1 -2 6164 5430 1225 101 0 0 chr12 78433634 78433802 -65848687 - L1PB1 LINE L1 -7 6144 5977 8930 204 12 6 chr12 78433802 78435943 -65846546 - L1PA16 LINE L1 -729 5437 3284 181 57 57 0 chr12 78436063 78436098 -65846391 + (TA)n Simple_repeat Simple_repeat 1 37 0 2384 93 0 0 chr12 78436164 78436464 -65846025 + AluSc SINE Alu 1 300 -9 21 36 0 0 chr12 78436725 78436753 -65845736 + AT_rich Low_complexity Low_complexity 1 28 0 230 297 27 14 chr12 78436777 78436851 -65845638 + MIR SINE MIR 155 229 -33 180 200 0 0 chr12 78436869 78436919 -65845570 + (TTA)n Simple_repeat Simple_repeat 3 52 0 809 124 78 0 chr12 78437068 78437197 -65845292 - MER85 DNA T2_type 0 139 1 2061 120 37 3 chr12 78439361 78439661 -65842828 - AluSx SINE Alu -2 310 1 1774 143 24 7 chr12 78439731 78440024 -65842465 - AluSx SINE Alu -4 308 11 22 0 0 0 chr12 78441919 78441941 -65840548 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 78442606 78442628 -65839861 + AT_rich Low_complexity Low_complexity 1 22 0 371 89 38 13 chr12 78442640 78442719 -65839770 + (TA)n Simple_repeat Simple_repeat 2 82 0 189 0 0 0 chr12 78442962 78442983 -65839506 + (CA)n Simple_repeat Simple_repeat 2 22 0 287 276 0 0 chr12 78442988 78443075 -65839414 - L1MC4 LINE L1 -1342 6700 6614 192 152 0 0 chr12 78443075 78443108 -65839381 + (TA)n Simple_repeat Simple_repeat 2 34 0 3787 277 38 15 chr12 78443320 78444395 -65838094 + L1MDa LINE L1 224 1323 -5217 867 188 5 27 chr12 78444500 78444686 -65837803 + LTR2B LTR ERV1 309 490 0 13431 191 8 13 chr12 78444688 78447145 -65835344 + HERVE LTR ERV1 2 2445 -5368 1787 179 13 0 chr12 78447245 78447552 -65834937 + MLT1A1-int LTR MaLR 1424 1734 -1 1438 195 41 47 chr12 78447555 78447919 -65834570 + MLT1A1 LTR MaLR 4 365 0 233 303 45 0 chr12 78448729 78448818 -65833671 - L2 LINE L2 0 3313 3221 21 0 0 0 chr12 78450159 78450180 -65832309 + AT_rich Low_complexity Low_complexity 1 21 0 2127 43 0 0 chr12 78450268 78450523 -65831966 - MER11D LTR ERVK 0 897 643 5669 143 14 20 chr12 78450635 78451709 -65830780 + L1PA16 LINE L1 5102 6166 0 305 319 101 0 chr12 78451709 78451847 -65830642 - L1MC/D LINE L1 -887 5446 5295 28 61 0 0 chr12 78451904 78451953 -65830536 + AT_rich Low_complexity Low_complexity 1 49 0 1818 158 6 16 chr12 78452298 78452609 -65829880 + AluJb SINE Alu 1 308 -4 2048 129 19 13 chr12 78453814 78454123 -65828366 - AluSx SINE Alu -1 311 1 40 37 0 0 chr12 78454257 78454311 -65828178 + AT_rich Low_complexity Low_complexity 1 54 0 474 364 84 19 chr12 78454316 78454742 -65827747 - HAL1 LINE L1 -904 1603 1150 1668 196 31 39 chr12 78455491 78456000 -65826489 - MLT2A2 LTR ERVL 0 554 49 7498 32 0 0 chr12 78456000 78457146 -65825343 + L1PA4 LINE L1 5008 6152 -3 258 50 100 0 chr12 78457225 78457265 -65825224 - MLT2A2 LTR ERVL -400 44 1 1634 203 66 37 chr12 78457499 78457657 -65824832 - L1MCa LINE L1 -3457 2969 2817 2053 108 3 39 chr12 78457657 78457964 -65824525 - AluSx SINE Alu -16 296 1 1634 203 66 37 chr12 78457964 78458662 -65823827 - L1MCa LINE L1 -3609 2817 2090 1085 194 127 8 chr12 78458652 78458889 -65823600 - L1MCa LINE L1 -6161 265 1 * 196 316 0 0 chr12 78458912 78458969 -65823520 - L2 LINE L2 0 3313 3257 23 33 0 0 chr12 78459580 78459610 -65822879 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr12 78460750 78460774 -65821715 + AT_rich Low_complexity Low_complexity 1 24 0 241 327 73 18 chr12 78461081 78461191 -65821298 - L2 LINE L2 -2 3270 3155 880 196 0 0 chr12 78462423 78462571 -65819918 + FRAM SINE Alu 1 147 -29 317 335 54 18 chr12 78462985 78463152 -65819337 - MER5A DNA MER1_type -2 187 15 1748 202 22 14 chr12 78465091 78465453 -65817036 - MLT1A1 LTR MaLR 0 365 1 36 77 0 0 chr12 78467031 78467109 -65815380 + AT_rich Low_complexity Low_complexity 1 78 0 727 274 97 49 chr12 78467205 78467615 -65814874 + L1MCa LINE L1 1 283 -5762 2210 233 60 57 chr12 78467623 78468974 -65813515 + L1MCa LINE L1 723 2294 -4451 403 241 66 0 chr12 78469037 78469203 -65813286 + L1MCa LINE L1 2425 2601 -3963 9597 212 59 37 chr12 78469269 78470265 -65812224 + L1M4 LINE L1 12 984 -6581 228 35 0 0 chr12 78470265 78470294 -65812195 + (TC)n Simple_repeat Simple_repeat 2 30 0 9597 212 59 37 chr12 78470294 78471339 -65811150 + L1M4 LINE L1 984 1847 -5718 210 37 0 0 chr12 78471339 78471366 -65811123 + (GA)n Simple_repeat Simple_repeat 2 28 0 9597 212 59 37 chr12 78471366 78472414 -65810075 + L1M4 LINE L1 1847 2870 -4695 5426 79 3 1 chr12 78472414 78473123 -65809366 + HERVL-A2 LTR ERVL 4945 5654 0 3005 104 39 7 chr12 78473123 78473554 -65808935 + MLT2A2 LTR ERVL 1 445 -8 4301 205 27 23 chr12 78473560 78474535 -65807954 - L1P LINE L1 -1731 4415 3437 32 43 0 0 chr12 78474688 78474734 -65807755 + AT_rich Low_complexity Low_complexity 1 46 0 8733 103 18 25 chr12 78475356 78475939 -65806550 + HSMAR1 DNA Mariner 1 587 -700 2076 111 10 3 chr12 78475939 78476228 -65806261 - AluSx SINE Alu -19 293 3 8733 103 18 25 chr12 78476228 78476940 -65805549 + HSMAR1 DNA Mariner 587 1287 0 32 43 0 0 chr12 78477025 78477071 -65805418 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 78477510 78477532 -65804957 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 78478055 78478076 -65804413 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 78478999 78479022 -65803467 + AT_rich Low_complexity Low_complexity 1 23 0 605 273 29 37 chr12 78479724 78479966 -65802523 + L1ME3A LINE L1 1 240 -5805 * 1858 258 56 38 chr12 78479965 78480732 -65801757 + L1M4 LINE L1 4792 5572 -1993 2032 259 157 8 chr12 78480753 78481017 -65801472 + L1MC3 LINE L1 6570 6793 -992 222 37 0 0 chr12 78481017 78481044 -65801445 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2032 259 157 8 chr12 78481044 78481274 -65801215 + L1MC3 LINE L1 6793 6987 -798 2386 63 0 35 chr12 78481274 78481590 -65800899 - AluY SINE Alu -6 305 1 2032 259 157 8 chr12 78481590 78481851 -65800638 + L1MC3 LINE L1 6987 7439 -346 21 0 0 0 chr12 78482534 78482555 -65799934 + AT_rich Low_complexity Low_complexity 1 21 0 688 277 14 74 chr12 78482620 78482905 -65799584 + MER90 LTR ERV1 48 315 -260 3279 138 27 11 chr12 78483007 78483571 -65798918 + L1MA7 LINE L1 5707 6279 -12 259 322 52 52 chr12 78484757 78484968 -65797521 - L2 LINE L2 -52 3261 3051 287 275 108 8 chr12 78485023 78485143 -65797346 - L2 LINE L2 -1303 2011 1880 360 241 80 9 chr12 78485262 78485374 -65797115 + MLT2B1 LTR ERVL 1 120 -395 1561 179 16 42 chr12 78485378 78485690 -65796799 + AluJo SINE Alu 3 306 -6 1194 245 121 6 chr12 78485736 78486059 -65796430 + MLT2B1 LTR ERVL 111 470 -50 207 242 0 0 chr12 78486072 78486171 -65796318 + (TA)n Simple_repeat Simple_repeat 1 99 0 479 206 6 0 chr12 78486276 78486451 -65796038 + (TA)n Simple_repeat Simple_repeat 2 177 0 21 0 0 0 chr12 78486785 78486806 -65795683 + AT_rich Low_complexity Low_complexity 1 21 0 734 349 102 58 chr12 78486839 78487943 -65794546 + L1ME3A LINE L1 499 1651 -4903 280 300 40 33 chr12 78487973 78488123 -65794366 - LTR40b LTR ERVL -40 422 272 308 333 20 27 chr12 78488416 78488563 -65793926 + L1ME3A LINE L1 1846 1991 -4754 428 256 0 0 chr12 78488583 78488714 -65793775 + FLAM_A SINE Alu 26 156 0 2395 275 34 12 chr12 78489190 78490225 -65792264 + L1ME3A LINE L1 2283 3340 -3224 * 3484 166 14 8 chr12 78490210 78490849 -65791640 - L1 LINE L1 -1938 4208 3566 7531 32 0 0 chr12 78490863 78491975 -65790514 - L1PA3 LINE L1 -3 6152 5040 7928 29 2 0 chr12 78491975 78492923 -65789566 + L1PA3 LINE L1 4068 5017 -1129 582 140 47 9 chr12 78492918 78493025 -65789464 - L1 LINE L1 -2567 3579 3469 * 6316 227 37 21 chr12 78493026 78494824 -65787665 + L1ME3A LINE L1 3338 5164 -1400 2120 236 11 9 chr12 78494955 78495388 -65787101 + MER54A LTR ERVL 468 901 0 3971 211 25 20 chr12 78495390 78496803 -65785686 + L1MB1 LINE L1 5162 6584 -2 859 305 48 41 chr12 78496812 78497286 -65785203 + L1ME3A LINE L1 5894 6380 -208 4338 220 27 38 chr12 78497683 78498940 -65783549 + L1MA7 LINE L1 3988 5214 -1077 1914 181 32 43 chr12 78498940 78499377 -65783112 + Tigger2a DNA MER2_type 3 434 0 4338 220 27 38 chr12 78499377 78500186 -65782303 + L1MA7 LINE L1 5214 6030 -261 313 232 130 51 chr12 78500825 78500963 -65781526 - MLT1J LTR MaLR -312 199 51 405 0 0 0 chr12 78501174 78501219 -65781270 + (CA)n Simple_repeat Simple_repeat 2 46 0 2099 158 111 5 chr12 78501260 78501647 -65780842 - MSTA LTR MaLR 0 428 1 2326 67 3 17 chr12 78501705 78502004 -65780485 + AluY SINE Alu 1 295 -16 384 233 159 13 chr12 78502228 78502460 -65780029 - Charlie7 DNA MER1_type -5 2607 2342 327 272 37 25 chr12 78502439 78502601 -65779888 - Charlie7 DNA MER1_type -1864 748 585 * 29 0 0 0 chr12 78503219 78503248 -65779241 + AT_rich Low_complexity Low_complexity 1 29 0 364 291 95 11 chr12 78503281 78503470 -65779019 - Charlie7 DNA MER1_type -2338 274 70 2148 97 0 3 chr12 78503651 78503940 -65778549 - AluY SINE Alu -23 288 1 28 0 0 0 chr12 78505869 78505897 -65776592 + AT_rich Low_complexity Low_complexity 1 28 0 4628 212 102 106 chr12 78506341 78507443 -65775046 - Cheshire DNA MER1_type -330 2090 985 639 226 0 20 chr12 78507443 78507589 -65774900 - FLAM_C SINE Alu 0 143 1 4628 212 102 106 chr12 78507589 78507787 -65774702 - Cheshire DNA MER1_type -1435 985 788 854 102 8 0 chr12 78507787 78507915 -65774574 - L1PB3 LINE L1 -2 6152 6024 4628 212 102 106 chr12 78507915 78508516 -65773973 - Cheshire DNA MER1_type -1632 788 51 312 268 101 45 chr12 78508536 78508715 -65773774 + L1ME LINE L1 5452 5640 -530 3144 79 7 0 chr12 78509369 78509789 -65772700 + L1PA7 LINE L1 5732 6154 0 180 0 0 0 chr12 78510429 78510449 -65772040 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 213 175 0 0 chr12 78511011 78511051 -65771438 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr12 78511330 78511351 -65771138 + AT_rich Low_complexity Low_complexity 1 21 0 23091 158 18 32 chr12 78511375 78516919 -65765570 - L1PA10 LINE L1 0 7606 1371 20047 96 15 4 chr12 78516919 78519678 -65762811 - HERVL LTR ERVL -1361 4293 1503 24 0 0 0 chr12 78520125 78520149 -65762340 + AT_rich Low_complexity Low_complexity 1 24 0 2733 158 2 9 chr12 78520301 78520758 -65761731 - L1PA15 LINE L1 -5 6160 5707 499 137 0 0 chr12 78520762 78520835 -65761654 + AluJ/FLAM SINE Alu 13 85 -227 311 297 0 11 chr12 78521006 78521097 -65761392 + GA-rich Low_complexity Low_complexity 2 91 0 24340 46 2 1 chr12 78521846 78525675 -65756814 - L1PA5 LINE L1 -6 6148 2317 448 331 33 22 chr12 78526037 78526221 -65756268 + MIR SINE MIR 2 187 -75 323 289 115 10 chr12 78526639 78526743 -65755746 + MIR SINE MIR 34 148 -60 186 43 0 0 chr12 78527176 78527199 -65755290 + (TATG)n Simple_repeat Simple_repeat 2 24 0 300 293 166 25 chr12 78527605 78527762 -65754727 + MIR SINE MIR 48 226 -36 2457 70 15 3 chr12 78530236 78531246 -65751243 - L1PA7 LINE L1 0 6154 5027 1143 194 30 34 chr12 78531270 78531533 -65750956 + MLT2D LTR ERVL 1 262 -152 199 0 65 0 chr12 78532688 78532719 -65749770 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 22 94 0 0 chr12 78533737 78533801 -65748688 + AT_rich Low_complexity Low_complexity 1 64 0 875 297 80 9 chr12 78533887 78534237 -65748252 - L1ME LINE L1 -424 5746 5372 259 302 0 0 chr12 78534262 78534348 -65748141 - L1MEd LINE L1 -5980 139 54 521 267 30 0 chr12 78534385 78534516 -65747973 - MER5B DNA MER1_type -43 135 1 22 35 0 0 chr12 78535583 78535612 -65746877 + AT_rich Low_complexity Low_complexity 1 29 0 1490 235 36 49 chr12 78535693 78536161 -65746328 - L1MC4a LINE L1 -5 7803 7342 22 35 0 0 chr12 78537676 78537705 -65744784 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 78538092 78538118 -65744371 + AT_rich Low_complexity Low_complexity 1 26 0 4721 115 17 29 chr12 78538118 78538889 -65743600 - L1PB2 LINE L1 -3 6148 5387 2212 117 8 22 chr12 78539218 78539578 -65742911 + THE1A LTR MaLR 1 355 0 323 221 7 83 chr12 78540689 78540834 -65741655 - L1MC4 LINE L1 -380 7662 7529 209 139 28 0 chr12 78540950 78540986 -65741503 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 234 259 25 12 chr12 78541027 78541108 -65741381 + (TA)n Simple_repeat Simple_repeat 1 82 0 237 253 0 38 chr12 78541123 78541202 -65741287 + L1MC4 LINE L1 7207 7282 -760 225 254 70 0 chr12 78541474 78541545 -65740944 + L2 LINE L2 3204 3279 -34 535 125 27 0 chr12 78541567 78541679 -65740810 + CT-rich Low_complexity Low_complexity 3 117 0 1640 165 0 4 chr12 78541681 78541936 -65740553 - AluSx SINE Alu -58 254 1 3532 243 109 14 chr12 78541982 78543034 -65739455 - L1MDa LINE L1 -5080 1460 309 2919 123 34 0 chr12 78543043 78543481 -65739008 - MLT2A2 LTR ERVL 0 453 1 36026 87 12 7 chr12 78543481 78544551 -65737938 - HERVL-A2 LTR ERVL 0 5654 4591 2041 113 0 53 chr12 78544551 78544895 -65737594 + AluSx SINE Alu 1 312 0 36026 87 12 7 chr12 78544895 78548672 -65733817 - HERVL-A2 LTR ERVL -1063 4591 780 572 217 40 33 chr12 78548680 78548832 -65733657 - L1MDa LINE L1 -6369 171 19 1751 137 41 0 chr12 78548869 78549161 -65733328 + AluSg SINE Alu 1 303 0 404 350 74 11 chr12 78549330 78549613 -65732876 - Charlie7 DNA MER1_type -2309 303 3 276 250 59 0 chr12 78550034 78550102 -65732387 + MIR SINE MIR 76 147 -61 36 40 0 0 chr12 78550722 78550772 -65731717 + AT_rich Low_complexity Low_complexity 1 50 0 1930 144 0 7 chr12 78551869 78552161 -65730328 + AluSx SINE Alu 1 290 -22 22 35 0 0 chr12 78552655 78552684 -65729805 + AT_rich Low_complexity Low_complexity 1 29 0 207 69 0 0 chr12 78553209 78553238 -65729251 + (TC)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr12 78553471 78553495 -65728994 + AT_rich Low_complexity Low_complexity 1 24 0 413 333 93 19 chr12 78555126 78555342 -65727147 + MIR SINE MIR 31 262 0 21 36 0 0 chr12 78555733 78555761 -65726728 + AT_rich Low_complexity Low_complexity 1 28 0 230 301 113 35 chr12 78556913 78557258 -65725231 + L1M4 LINE L1 3546 3917 -2229 30 45 0 0 chr12 78557438 78557482 -65725007 + AT_rich Low_complexity Low_complexity 1 44 0 378 156 83 73 chr12 78557505 78557601 -65724888 - MER3 DNA MER1_type -81 128 32 33 0 0 0 chr12 78557607 78557640 -65724849 + AT_rich Low_complexity Low_complexity 1 33 0 2130 62 0 0 chr12 78557640 78557898 -65724591 - AluY SINE Alu -48 263 6 1878 128 77 14 chr12 78558240 78558593 -65723896 - THE1C LTR MaLR 0 375 1 222 78 39 20 chr12 78560480 78560531 -65721958 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 22 35 0 0 chr12 78561110 78561139 -65721350 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr12 78562410 78562449 -65720040 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr12 78562603 78562632 -65719857 + AT_rich Low_complexity Low_complexity 1 29 0 585 88 0 0 chr12 78563225 78563305 -65719184 + MADE1 DNA Mariner 1 80 0 4519 158 31 28 chr12 78563735 78564617 -65717872 - L1MA6 LINE L1 0 6300 5417 2695 142 28 39 chr12 78564622 78565220 -65717269 + L1MA6 LINE L1 4833 5432 -743 555 103 0 0 chr12 78565696 78565774 -65716715 + MADE1 DNA Mariner 3 80 0 25 51 0 0 chr12 78565801 78565840 -65716649 + AT_rich Low_complexity Low_complexity 1 39 0 960 86 14 7 chr12 78566733 78566872 -65715617 + AluSp/q SINE Alu 159 298 -15 1667 109 105 4 chr12 78567004 78567309 -65715180 - AluSg SINE Alu 0 331 1 1108 83 47 36 chr12 78567643 78567836 -65714653 + L1MA8 LINE L1 6084 6278 -13 1512 110 5 0 chr12 78567850 78568059 -65714430 - AluSg/x SINE Alu -20 290 81 441 0 0 0 chr12 78568214 78568263 -65714226 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 303 368 44 7 chr12 78568272 78568408 -65714081 - L1MEd LINE L1 -5433 686 546 2105 110 3 3 chr12 78568455 78568754 -65713735 - AluSx SINE Alu -13 299 1 24 67 0 0 chr12 78569988 78570033 -65712456 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr12 78570088 78570109 -65712380 + AT_rich Low_complexity Low_complexity 1 21 0 3147 162 22 72 chr12 78571328 78572055 -65710434 - LTR8 LTR ERV1 0 691 1 724 276 127 49 chr12 78572220 78572670 -65709819 - MLT1J LTR MaLR 0 511 27 2532 120 32 5 chr12 78572761 78573199 -65709290 + PABL_A-int LTR ERV1 3143 3565 -1450 1404 80 5 52 chr12 78573200 78573340 -65709149 + MER41A LTR ERV1 250 378 -176 2236 107 0 13 chr12 78573340 78573650 -65708839 + AluSx SINE Alu 1 306 -6 1404 80 5 52 chr12 78573650 78573722 -65708767 + MER41A LTR ERV1 378 452 -102 1182 270 81 35 chr12 78573933 78574425 -65708064 + MER90 LTR ERV1 100 614 0 377 238 0 12 chr12 78574431 78574511 -65707978 - Tigger5 DNA MER2_type -3 2320 2242 320 279 0 0 chr12 78574564 78574643 -65707846 + Tigger5 DNA MER2_type 2238 2316 -7 8035 154 16 27 chr12 78574958 78577589 -65704900 - L1MA1 LINE L1 -4 6298 3688 355 274 17 26 chr12 78578100 78578217 -65704272 - L1ME3A LINE L1 -53 6117 6002 382 93 67 13 chr12 78578267 78578342 -65704147 - AluSp/q SINE Alu 0 303 225 385 61 47 2 chr12 78578347 78578423 -65704066 - AluSp/q SINE Alu 0 303 239 2031 104 42 3 chr12 78578423 78578712 -65703777 - AluSq SINE Alu -11 302 3 632 291 61 12 chr12 78578715 78579215 -65703274 - L1ME3 LINE L1 -190 5980 5301 241 218 0 18 chr12 78579217 78579272 -65703217 + (TA)n Simple_repeat Simple_repeat 2 55 0 262 271 28 9 chr12 78579292 78579399 -65703090 - L1ME3 LINE L1 -2199 3947 3839 237 163 0 0 chr12 78579493 78579542 -65702947 + (TG)n Simple_repeat Simple_repeat 2 50 0 1230 306 77 17 chr12 78579592 78580808 -65701681 - L1ME3 LINE L1 -2735 3411 2111 23 0 0 0 chr12 78580809 78580832 -65701657 + AT_rich Low_complexity Low_complexity 1 23 0 1048 241 136 87 chr12 78581221 78581656 -65700833 + MLT2B1 LTR ERVL 1 456 -64 2683 148 36 6 chr12 78581703 78582177 -65700312 - HSMAR2 DNA Mariner -1 1301 814 283 291 42 67 chr12 78582198 78582363 -65700126 - LTR16A1 LTR ERVL -90 367 207 5139 132 10 28 chr12 78582372 78583203 -65699286 - HSMAR2 DNA Mariner -486 816 1 293 125 0 0 chr12 78583321 78583369 -65699120 + MLT2B2 LTR ERVL 473 515 0 344 356 7 7 chr12 78583674 78583809 -65698680 + HERV16 LTR ERVL 495 629 -4367 376 331 24 0 chr12 78584729 78584898 -65697591 + (TATATG)n Simple_repeat Simple_repeat 5 177 0 1137 216 46 66 chr12 78585110 78585415 -65697074 - AluJo SINE Alu -7 305 7 343 336 0 8 chr12 78585491 78585619 -65696870 - MER91B DNA MER1_type -62 128 2 521 250 9 0 chr12 78585621 78585733 -65696756 - MER81 DNA DNA 0 114 2 499 329 20 7 chr12 78586033 78586185 -65696304 + MIR3 SINE MIR 41 194 -14 465 354 111 0 chr12 78586694 78586920 -65695569 + MIR SINE MIR 2 252 -10 2750 10 0 6 chr12 78587359 78587672 -65694817 - AluYa5 SINE Alu 0 311 1 31 44 0 0 chr12 78588260 78588305 -65694184 + AT_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr12 78588749 78588785 -65693704 + AT_rich Low_complexity Low_complexity 1 36 0 434 309 48 30 chr12 78589346 78589514 -65692975 + MER5A DNA MER1_type 18 188 -1 2211 88 3 0 chr12 78589614 78589897 -65692592 + AluSg SINE Alu 1 284 -26 1981 87 38 0 chr12 78589897 78590162 -65692327 + AluSc SINE Alu 13 287 -22 1082 261 38 28 chr12 78590565 78590949 -65691540 - L1MD3 LINE L1 -9 8042 7663 1371 161 29 111 chr12 78590949 78591328 -65691161 + MER7A DNA MER2_type 1 346 0 1082 261 38 28 chr12 78591328 78591503 -65690986 - L1MD3 LINE L1 -388 7663 2216 447 250 48 42 chr12 78591623 78591791 -65690698 - L1MD3 LINE L1 -5066 631 463 * 1372 285 66 27 chr12 78591788 78592671 -65689818 - L1MEc LINE L1 -4511 1885 969 34 55 0 0 chr12 78592673 78592728 -65689761 + AT_rich Low_complexity Low_complexity 1 55 0 845 275 0 0 chr12 78592739 78592946 -65689543 - MER6B DNA MER2_type 0 210 4 513 364 15 11 chr12 78592995 78593256 -65689233 - L1MD3 LINE L1 -6028 368 107 1945 90 3 41 chr12 78593420 78593731 -65688758 + AluY SINE Alu 2 301 0 1134 141 0 11 chr12 78593768 78593952 -65688537 - AluSg/x SINE Alu -1 311 130 219 267 185 22 chr12 78593953 78594088 -65688401 + L2 LINE L2 3026 3182 -131 22 94 0 0 chr12 78594266 78594330 -65688159 + AT_rich Low_complexity Low_complexity 1 64 0 1957 113 4 4 chr12 78594494 78594801 -65687688 - AluSq SINE Alu 0 320 14 1854 279 95 63 chr12 78595392 78596802 -65685687 + L1M4 LINE L1 1 1460 -5082 467 102 0 91 chr12 78596802 78596890 -65685599 + MADE1 DNA Mariner 1 80 0 1854 279 95 63 chr12 78596890 78596943 -65685546 + L1M4 LINE L1 1460 1510 -5032 * 3102 229 93 28 chr12 78596934 78598898 -65683591 + L1M4 LINE L1 1869 4051 -2593 213 292 94 21 chr12 78598936 78599032 -65683457 + MIR SINE MIR 110 212 -50 1822 117 4 0 chr12 78599076 78599340 -65683149 - AluY SINE Alu 0 311 47 218 125 0 69 chr12 78599575 78599647 -65682842 + (T)n Simple_repeat Simple_repeat 1 67 0 41515 35 31 2 chr12 78599648 78605619 -65676870 - L1PA3 LINE L1 -1 6154 4 215 365 0 0 chr12 78605709 78605772 -65676717 + L2 LINE L2 3194 3256 -16 24 85 0 0 chr12 78607314 78607373 -65675116 + AT_rich Low_complexity Low_complexity 1 59 0 967 281 118 56 chr12 78608491 78608890 -65673599 + L1ME LINE L1 19 471 -5599 2051 99 51 3 chr12 78608890 78609184 -65673305 + AluSq SINE Alu 1 308 -5 967 281 118 56 chr12 78609184 78609396 -65673093 + L1ME LINE L1 471 668 -5402 1134 179 47 69 chr12 78610175 78610494 -65671995 + MER33 DNA MER1_type 5 316 -8 256 160 60 0 chr12 78610508 78610558 -65671931 - MER58 DNA MER1_type -3 2417 2365 11086 90 8 6 chr12 78610589 78612937 -65669552 - L1PA7 LINE L1 -4 6150 3795 4829 96 11 8 chr12 78612938 78613665 -65668824 + L1PA7 LINE L1 3085 3813 -2333 270 325 42 17 chr12 78613703 78613823 -65668666 - MER58 DNA MER1_type -91 124 2 621 316 64 12 chr12 78614408 78614658 -65667831 + MLT1I LTR MaLR 146 408 -1 29 47 0 0 chr12 78615069 78615112 -65667377 + AT_rich Low_complexity Low_complexity 1 43 0 194 424 17 0 chr12 78615161 78615279 -65667210 + L2 LINE L2 2613 2732 -582 22 80 0 0 chr12 78616036 78616086 -65666403 + AT_rich Low_complexity Low_complexity 1 50 0 2430 65 0 3 chr12 78616636 78616945 -65665544 + AluY SINE Alu 1 308 -3 21 0 0 0 chr12 78617947 78617968 -65664521 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 78618301 78618322 -65664167 + AT_rich Low_complexity Low_complexity 1 21 0 554 239 215 34 chr12 78618491 78618696 -65663793 - MLT1D LTR MaLR -263 242 1 31 76 0 0 chr12 78619644 78619710 -65662779 + AT_rich Low_complexity Low_complexity 1 66 0 2321 91 0 3 chr12 78619767 78620075 -65662414 + AluSx SINE Alu 1 307 -5 35 78 0 0 chr12 78620599 78620676 -65661813 + AT_rich Low_complexity Low_complexity 1 77 0 213 94 0 0 chr12 78621795 78621827 -65660662 + (CTA)n Simple_repeat Simple_repeat 3 34 0 228 35 0 0 chr12 78621830 78621859 -65660630 + (ATG)n Simple_repeat Simple_repeat 1 29 0 452 283 57 57 chr12 78624089 78624301 -65658188 + MIR SINE MIR 51 262 0 2247 117 0 0 chr12 78624800 78625109 -65657380 - AluSc SINE Alu 0 309 1 21 57 0 0 chr12 78625456 78625491 -65656998 + AT_rich Low_complexity Low_complexity 1 35 0 315 235 12 0 chr12 78625504 78625589 -65656900 + L1MC3 LINE L1 46 131 -5914 504 244 50 0 chr12 78625589 78625708 -65656781 + MER54A LTR ERVL 777 901 0 868 185 65 0 chr12 78625708 78625892 -65656597 + L1MC3 LINE L1 1861 2056 -4508 * 1303 202 64 9 chr12 78625891 78626240 -65656249 + L1MC3 LINE L1 2265 2633 -3931 1337 199 35 48 chr12 78626241 78626557 -65655932 + AluJo SINE Alu 1 312 0 408 111 0 0 chr12 78626584 78626647 -65655842 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 333 200 14 0 chr12 78626650 78626720 -65655769 + L1MC3 LINE L1 2669 2739 -4006 300 167 0 0 chr12 78626732 78626786 -65655703 + L1MC3 LINE L1 5443 5496 -1068 1468 184 49 68 chr12 78626816 78627373 -65655116 + L1MC3 LINE L1 5487 6010 -743 1117 238 203 39 chr12 78627383 78627841 -65654648 - LTR55 LTR ERV -10 538 6 2975 201 51 53 chr12 78627852 78628720 -65653769 + L1MC3 LINE L1 6014 6879 -1324 1232 320 56 77 chr12 78628728 78629753 -65652736 - L2 LINE L2 -151 3162 2150 557 336 126 9 chr12 78629988 78630211 -65652278 - MIR SINE MIR -1 261 13 329 318 87 42 chr12 78630216 78630505 -65651984 + L1MC4a LINE L1 4033 4334 -1812 192 321 75 22 chr12 78630610 78630744 -65651745 - L2 LINE L2 -9 3304 3164 2242 121 4 121 chr12 78631135 78631616 -65650873 - MER61B LTR ERV1 0 425 1 230 111 0 44 chr12 78631658 78631703 -65650786 - L1MA3 LINE L1 0 6305 6263 1936 313 71 40 chr12 78632105 78633145 -65649344 + L2 LINE L2 2222 3307 -6 227 225 45 9 chr12 78634361 78634472 -65648017 + GA-rich Low_complexity Low_complexity 2 116 0 664 294 19 57 chr12 78634895 78635266 -65647223 + L1MC4a LINE L1 5515 5871 -1937 190 261 146 69 chr12 78636584 78636714 -65645775 + MIR3 SINE MIR 4 143 -65 * 237 226 119 36 chr12 78636682 78636766 -65645723 + MIR SINE MIR 111 201 -61 217 351 72 0 chr12 78636880 78636991 -65645498 - L2 LINE L2 -20 3293 3175 1237 145 8 60 chr12 78637002 78637250 -65645239 + MER46A DNA MER2_type 2 236 0 192 77 0 0 chr12 78637492 78637518 -65644971 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1305 254 130 28 chr12 78637674 78638142 -65644347 + MLT1E2 LTR MaLR 111 626 0 428 34 0 17 chr12 78638347 78638406 -65644083 + (TG)n Simple_repeat Simple_repeat 1 58 0 1855 166 10 0 chr12 78638672 78638973 -65643516 + AluJb SINE Alu 3 306 -6 22 0 0 0 chr12 78639254 78639276 -65643213 + AT_rich Low_complexity Low_complexity 1 22 0 992 210 29 5 chr12 78639874 78640079 -65642410 - MER6B DNA MER2_type 0 210 1 280 330 128 22 chr12 78640183 78640362 -65642127 - MIR SINE MIR -13 249 52 33 25 0 0 chr12 78640609 78640649 -65641840 + AT_rich Low_complexity Low_complexity 1 40 0 292 234 153 15 chr12 78640688 78640825 -65641664 - L1MEd LINE L1 -4913 1206 1051 23 54 0 0 chr12 78641996 78642033 -65640456 + AT_rich Low_complexity Low_complexity 1 37 0 2452 21 0 0 chr12 78642085 78642366 -65640123 - L1P2 LINE L1 -378 5777 5497 26 0 0 0 chr12 78642366 78642392 -65640097 + AT_rich Low_complexity Low_complexity 1 26 0 1279 122 0 39 chr12 78642631 78642836 -65639653 + AluSq SINE Alu 3 199 -114 187 109 47 31 chr12 78642901 78642965 -65639524 + (TA)n Simple_repeat Simple_repeat 2 66 0 1811 134 3 34 chr12 78643212 78643504 -65638985 - AluSx SINE Alu -25 287 5 1610 230 22 0 chr12 78643956 78644313 -65638176 - MLT1A1 LTR MaLR 0 365 1 2957 244 21 7 chr12 78644314 78644934 -65637555 - MLT1A1-int LTR MaLR 0 1735 1107 26 74 0 0 chr12 78646046 78646100 -65636389 + AT_rich Low_complexity Low_complexity 1 54 0 28 29 0 0 chr12 78646574 78646609 -65635880 + AT_rich Low_complexity Low_complexity 1 35 0 1813 263 114 37 chr12 78647029 78647739 -65634750 - LTR41 LTR ERVL -6 767 3 210 171 0 0 chr12 78648454 78648489 -65634000 + (TA)n Simple_repeat Simple_repeat 1 35 0 226 333 0 0 chr12 78648490 78648580 -65633909 - L1MC4 LINE L1 -1339 6703 6614 * 243 259 47 0 chr12 78648505 78648590 -65633899 + L1MC4 LINE L1 6615 6703 -1339 236 190 17 0 chr12 78648575 78648633 -65633856 + L1MCa LINE L1 2006 2064 -4362 * 303 28 0 0 chr12 78648664 78648700 -65633789 + (CA)n Simple_repeat Simple_repeat 2 37 0 1115 220 87 22 chr12 78649469 78649746 -65632743 - AluJo SINE Alu -6 296 2 243 286 67 17 chr12 78650867 78650986 -65631503 + L1ME LINE L1 147 271 -5934 337 336 59 8 chr12 78651737 78652091 -65630398 + L1ME LINE L1 1371 1742 -4654 2253 86 3 7 chr12 78652220 78652524 -65629965 + AluSc SINE Alu 1 303 -6 1622 182 3 3 chr12 78652712 78653003 -65629486 + AluJo SINE Alu 1 291 -21 298 333 8 8 chr12 78653480 78653606 -65628883 - HsTC2 DNA Tc2 -1264 634 509 7109 46 12 0 chr12 78653826 78654924 -65627565 - L1PA5 LINE L1 0 6154 5055 319 102 0 20 chr12 78654924 78654962 -65627527 - L1P LINE L1 -1042 5104 5066 * 33673 71 2 1 chr12 78654955 78659401 -65623088 - L1PA5 LINE L1 -1698 4448 2 1465 175 88 7 chr12 78661105 78661379 -65621110 + AluJo SINE Alu 1 296 -16 263 280 67 0 chr12 78662087 78662162 -65620327 + MIR3 SINE MIR 120 199 -9 23 0 0 0 chr12 78663413 78663436 -65619053 + AT_rich Low_complexity Low_complexity 1 23 0 396 266 235 31 chr12 78663457 78663806 -65618683 + L1M4c LINE L1 1565 2033 -4349 25 51 0 0 chr12 78664250 78664289 -65618200 + AT_rich Low_complexity Low_complexity 1 39 0 273 364 31 31 chr12 78664455 78664584 -65617905 + MIR SINE MIR 1 129 -133 25 0 0 0 chr12 78664834 78664859 -65617630 + AT_rich Low_complexity Low_complexity 1 25 0 347 138 21 32 chr12 78665057 78665151 -65617338 + GA-rich Low_complexity Low_complexity 4 96 0 452 361 45 12 chr12 78665213 78665393 -65617096 + L1ME2 LINE L1 5472 5645 -519 2186 112 0 0 chr12 78665393 78665696 -65616793 + AluSg SINE Alu 1 303 -7 452 361 45 12 chr12 78665696 78665917 -65616572 + L1ME2 LINE L1 5645 5886 -278 187 290 32 16 chr12 78666045 78666107 -65616382 + L2 LINE L2 3204 3266 -6 27 0 0 0 chr12 78666327 78666354 -65616135 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 78667005 78667026 -65615463 + AT_rich Low_complexity Low_complexity 1 21 0 320 275 53 53 chr12 78667458 78667629 -65614860 - MIR SINE MIR 0 262 92 501 214 114 99 chr12 78667663 78667864 -65614625 - MER63A DNA MER1_type -6 204 1 12331 84 3 11 chr12 78668632 78670280 -65612209 + HERVL LTR ERVL 573 2207 -3447 878 62 0 0 chr12 78670381 78670494 -65611995 - THE1A-int LTR MaLR -1467 113 1 2044 102 0 1 chr12 78670494 78670806 -65611683 - THE1A LTR MaLR 0 355 1 706 235 13 7 chr12 78671447 78671596 -65610893 + MLT1A1 LTR MaLR 1 150 -215 208 254 32 48 chr12 78671946 78672009 -65610480 + L2 LINE L2 3248 3309 -4 2754 191 18 2 chr12 78672087 78672596 -65609893 + MLT2B1 LTR ERVL 1 517 -3 337 362 13 0 chr12 78673055 78673207 -65609282 - L2 LINE L2 -788 2526 2373 270 263 202 9 chr12 78673337 78673451 -65609038 - MIR SINE MIR -5 257 122 646 158 0 18 chr12 78673489 78673603 -65608886 + FRAM SINE Alu 46 157 -19 258 329 108 64 chr12 78673673 78674062 -65608427 - L2 LINE L2 -1010 2304 1899 6948 188 29 1 chr12 78674162 78675420 -65607069 - MST-int LTR MaLR -332 1319 26 3889 191 8 4 chr12 78675527 78676312 -65606177 + L1 LINE L1 4271 5058 -1088 690 184 0 0 chr12 78676442 78676567 -65605922 + MER5A DNA MER1_type 17 141 -48 720 161 23 0 chr12 78676577 78676707 -65605782 + FLAM_C SINE Alu 1 133 0 1096 207 9 24 chr12 78676732 78676945 -65605544 - Tigger5 DNA MER2_type -2084 239 30 249 348 106 29 chr12 78677328 78677535 -65604954 + LTR67 LTR ERVL 153 375 -182 247 293 0 0 chr12 78677649 78677707 -65604782 + MER94 DNA DNA 77 134 0 1103 231 8 26 chr12 78678351 78678619 -65603870 + AluJo SINE Alu 6 268 -44 979 190 20 20 chr12 78678822 78679069 -65603420 - L1 LINE L1 -752 5394 5148 317 172 62 0 chr12 78679067 78679131 -65603358 - L1MA7 LINE L1 -51 6240 6173 * 296 118 191 0 chr12 78679125 78679193 -65603296 + L1PA16 LINE L1 6077 6157 -9 * 998 127 0 20 chr12 78679514 78679707 -65602782 + AluSg/x SINE Alu 137 326 0 584 277 22 0 chr12 78680078 78680215 -65602274 - MER45A DNA AcHobo -38 140 1 2550 14 0 0 chr12 78680747 78681032 -65601457 + AluY SINE Alu 1 285 -26 989 294 70 37 chr12 78681391 78681936 -65600553 - HsTC2 DNA Tc2 0 1900 1162 628 161 0 17 chr12 78681942 78682060 -65600429 + MER34 LTR ERV1 1 116 -426 1065 245 108 0 chr12 78682062 78682348 -65600141 + MER34 LTR ERV1 226 542 0 2375 224 74 24 chr12 78682622 78683653 -65598836 - L1MC3 LINE L1 -746 5469 5002 2313 179 19 12 chr12 78683653 78684071 -65598418 + MSTB LTR MaLR 1 421 -5 580 247 18 6 chr12 78684071 78684237 -65598252 - L1MC3 LINE L1 -1204 5011 4844 735 236 46 32 chr12 78685367 78685583 -65596906 - MER58A DNA MER1_type 0 224 6 869 251 65 0 chr12 78686998 78687305 -65595184 - L1MC3 LINE L1 -3505 2710 2384 523 127 0 0 chr12 78687554 78687633 -65594856 - AluS SINE Alu -234 79 1 245 389 37 48 chr12 78687875 78688450 -65594039 + L2 LINE L2 2712 3272 0 204 40 0 0 chr12 78689175 78689200 -65593289 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 5580 155 42 24 chr12 78690911 78691950 -65590539 - Tigger1 DNA MER2_type -1359 1059 2 29 28 0 0 chr12 78692597 78692633 -65589856 + AT_rich Low_complexity Low_complexity 1 36 0 414 179 0 0 chr12 78692768 78692846 -65589643 - MLT1A2 LTR MaLR -4 370 293 * 784 138 38 25 chr12 78692845 78693004 -65589485 - MLT1A2 LTR MaLR -212 162 2 198 0 0 0 chr12 78693094 78693116 -65589373 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1819 167 0 20 chr12 78695159 78695459 -65587030 - AluJo SINE Alu -17 295 2 440 311 133 35 chr12 78695696 78696072 -65586417 - L1MC3 LINE L1 -4946 1450 1038 5936 239 22 24 chr12 78696073 78697681 -65584808 - L1MC3 LINE L1 -8 7777 6172 1199 323 65 43 chr12 78698192 78698914 -65583575 - L1M2b LINE L1 -6471 738 1 1778 257 17 13 chr12 78698948 78699544 -65582945 - L1M4 LINE L1 -1606 4540 3943 * 4613 171 28 2 chr12 78699542 78701002 -65581487 + L1P5 LINE L1 4288 5779 -372 180 0 0 0 chr12 78701002 78701022 -65581467 + (TA)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr12 78702137 78702165 -65580324 + AT_rich Low_complexity Low_complexity 1 28 0 254 167 37 0 chr12 78703367 78703475 -65579014 + (TA)n Simple_repeat Simple_repeat 2 113 0 309 257 40 30 chr12 78703475 78703576 -65578913 + L1MC4 LINE L1 6604 6705 -1337 1774 128 0 0 chr12 78703583 78703834 -65578655 - AluSx SINE Alu -32 280 30 22 70 0 0 chr12 78705925 78705968 -65576521 + AT_rich Low_complexity Low_complexity 1 43 0 232 275 201 57 chr12 78706212 78706441 -65576048 - L3 LINE CR1 -285 1292 1031 31 58 0 0 chr12 78707205 78707257 -65575232 + AT_rich Low_complexity Low_complexity 1 52 0 253 255 118 83 chr12 78707687 78707891 -65574598 + MLT2C1 LTR ERVL 187 397 0 * 372 286 94 10 chr12 78707891 78708167 -65574322 + MLT1G3 LTR MaLR 105 459 -108 1027 296 56 113 chr12 78708306 78708969 -65573520 + MLT2F LTR ERVL 37 661 -2 1843 179 17 28 chr12 78709032 78709384 -65573105 - MLT1A1 LTR MaLR 0 365 18 872 336 69 32 chr12 78709945 78710486 -65572003 - L2 LINE L2 0 3313 2702 309 340 19 10 chr12 78710590 78710693 -65571796 + L2 LINE L2 3195 3298 -15 1627 242 72 10 chr12 78710770 78711450 -65571039 - L1M4 LINE L1 -2777 3369 2635 2793 94 33 57 chr12 78711490 78711523 -65570966 - MLT2A1 LTR ERVL 0 444 412 192 77 0 0 chr12 78711523 78711549 -65570940 + (TA)n Simple_repeat Simple_repeat 2 27 0 2793 94 33 57 chr12 78711549 78711970 -65570519 - MLT2A1 LTR ERVL -32 412 1 7208 84 12 2 chr12 78711970 78712951 -65569538 - HERVL-A1 LTR ERVL 0 5654 4664 15911 166 8 13 chr12 78713154 78715791 -65566698 - HERVE LTR ERV1 -2564 5249 2627 6482 25 1 3 chr12 78715893 78716645 -65565844 - MER11D LTR ERVK -146 751 1 28 95 0 0 chr12 78717724 78717808 -65564681 + AT_rich Low_complexity Low_complexity 1 84 0 30 27 0 0 chr12 78719081 78719118 -65563371 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr12 78719182 78719206 -65563283 + AT_rich Low_complexity Low_complexity 1 24 0 239 315 97 7 chr12 78721284 78721420 -65561069 + MIR SINE MIR 58 204 -58 4188 155 84 49 chr12 78722019 78723054 -65559435 + MER11C LTR ERVK 1 1071 0 27 62 0 0 chr12 78724394 78724442 -65558047 + AT_rich Low_complexity Low_complexity 1 48 0 26 0 0 0 chr12 78724516 78724542 -65557947 + AT_rich Low_complexity Low_complexity 1 26 0 2098 111 7 13 chr12 78724543 78724841 -65557648 - AluY SINE Alu -15 296 1 210 143 0 0 chr12 78727518 78727553 -65554936 + (TATG)n Simple_repeat Simple_repeat 2 36 0 252 211 53 0 chr12 78728396 78728472 -65554017 + (TA)n Simple_repeat Simple_repeat 2 81 0 266 312 112 24 chr12 78728522 78728647 -65553842 + MIR SINE MIR 116 251 -11 26 0 0 0 chr12 78729182 78729208 -65553281 + AT_rich Low_complexity Low_complexity 1 26 0 228 222 41 0 chr12 78729344 78729400 -65553089 - MIR SINE MIR -62 146 97 442 314 147 48 chr12 78729909 78730345 -65552144 - L2 LINE L2 -840 2474 1996 326 290 9 9 chr12 78730453 78730560 -65551929 - MLT2F LTR ERVL 0 663 557 2426 132 14 0 chr12 78730563 78730933 -65551556 + THE1C LTR MaLR 1 375 0 5022 129 58 4 chr12 78730933 78731725 -65550764 + THE1C-int LTR MaLR 1 835 -745 695 319 47 19 chr12 78731878 78732198 -65550291 - MLT2F LTR ERVL -316 347 19 196 287 0 35 chr12 78732385 78732472 -65550017 - L2 LINE L2 -1654 1660 1577 526 274 11 107 chr12 78732539 78732802 -65549687 + MIR SINE MIR 3 240 -22 38 85 0 0 chr12 78732835 78732929 -65549560 + AT_rich Low_complexity Low_complexity 1 94 0 1981 142 4 0 chr12 78733003 78733284 -65549205 + AluSx SINE Alu 1 325 0 212 70 23 23 chr12 78733284 78733327 -65549162 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 322 268 52 0 chr12 78733381 78733478 -65549011 - L1ME LINE L1 -392 5729 5628 2320 62 7 10 chr12 78734468 78734773 -65547716 - AluY SINE Alu -7 304 1 205 298 35 70 chr12 78734978 78735092 -65547397 - MIR SINE MIR -146 116 7 2671 183 26 12 chr12 78735763 78736271 -65546218 - MLT2B2 LTR ERVL 0 515 1 1970 128 51 14 chr12 78736271 78736624 -65545865 - ERVL-B2 LTR ERVL -7 5757 5392 13493 154 55 18 chr12 78736624 78739073 -65543416 - Tigger2 DNA MER2_type 0 2718 179 656 200 83 11 chr12 78739175 78739355 -65543134 - Tigger2 DNA MER2_type -2523 195 3 1246 194 29 0 chr12 78739356 78739598 -65542891 - ERVL-B2 LTR ERVL -370 5394 5146 1644 176 88 0 chr12 78739599 78739906 -65542583 - MER7A DNA MER2_type -1 345 14 3724 189 9 8 chr12 78739918 78740589 -65541900 - ERVL-B2 LTR ERVL -616 5148 4477 2241 188 22 0 chr12 78740597 78740997 -65541492 - MSTB LTR MaLR -15 411 3 5835 178 20 2 chr12 78740999 78742030 -65540459 - ERVL-B2 LTR ERVL -1274 4490 3441 16302 205 32 30 chr12 78742130 78745546 -65536943 - ERVL-B2 LTR ERVL -2338 3426 3 236 139 139 0 chr12 78745548 78745588 -65536901 - ERVL-B2 LTR ERVL 0 515 470 443 233 0 0 chr12 78745588 78745674 -65536815 - Tigger5 DNA MER2_type -1 2322 2237 602 161 0 0 chr12 78745685 78745772 -65536717 + Tigger5 DNA MER2_type 1 87 -2236 340 161 16 16 chr12 78745799 78745861 -65536628 - Tigger5 DNA MER2_type -10 2313 2252 * 355 182 0 0 chr12 78745830 78745885 -65536604 - Tigger5 DNA MER2_type -2267 56 2 2258 248 13 32 chr12 78745889 78746413 -65536076 - MLT2B3 LTR ERVL -40 514 1 225 279 122 31 chr12 78747274 78747528 -65534961 - L1M4 LINE L1 -1094 5052 4776 21 36 0 0 chr12 78748115 78748143 -65534346 + AT_rich Low_complexity Low_complexity 1 28 0 4123 123 26 48 chr12 78748451 78749208 -65533281 - Tigger3b DNA MER2_type -1 1231 491 1747 156 35 28 chr12 78749208 78749576 -65532913 - MSTA LTR MaLR 0 428 1 397 107 0 0 chr12 78749576 78749632 -65532857 - Tigger3b DNA MER2_type -737 495 440 251 135 0 0 chr12 78749628 78749665 -65532824 - MSTA LTR MaLR -391 37 1 * 2303 147 88 12 chr12 78749665 78750088 -65532401 - Tigger3b DNA MER2_type -737 494 40 2773 217 54 6 chr12 78750095 78750815 -65531674 + L1PB4 LINE L1 4300 5054 -1092 2807 175 9 4 chr12 78750819 78751346 -65531143 + L1PB4 LINE L1 5263 5792 -364 207 229 0 0 chr12 78751354 78751415 -65531074 + (TA)n Simple_repeat Simple_repeat 2 62 0 309 148 50 10 chr12 78751498 78751599 -65530890 + (TA)n Simple_repeat Simple_repeat 1 105 0 1769 194 10 48 chr12 78751599 78751995 -65530494 + L1PB4 LINE L1 5775 6155 -1 633 238 42 21 chr12 78752055 78752244 -65530245 - LTR48 LTR ERV1 0 787 595 1030 220 121 35 chr12 78752254 78752568 -65529921 - LTR48 LTR ERV1 -314 473 133 280 240 250 10 chr12 78752546 78752650 -65529839 - MER39 LTR ERV1 -578 129 1 * 985 227 20 27 chr12 78753216 78753559 -65528930 - MER39-int LTR ERV1 -164 6167 4541 * 3823 167 131 67 chr12 78753555 78754098 -65528391 - LTR48-int LTR ERV1 -541 5790 5283 180 207 17 69 chr12 78754098 78754156 -65528333 - MER5C DNA MER1_type -115 209 155 3823 167 131 67 chr12 78754156 78754227 -65528262 - LTR48-int LTR ERV1 -1048 5283 5218 2725 136 5 18 chr12 78754227 78754661 -65527828 + MSTA LTR MaLR 1 428 0 3823 167 131 67 chr12 78754661 78755006 -65527483 - LTR48-int LTR ERV1 -1113 5218 4708 915 169 32 22 chr12 78755075 78755278 -65527211 - LTR48-int LTR ERV1 -3059 3272 994 393 231 26 138 chr12 78755296 78755491 -65526998 - LTR48-int LTR ERV1 -3724 1399 1227 290 194 0 48 chr12 78755590 78755652 -65526837 - LTR48-int LTR ERV1 -4116 3421 3363 400 301 23 8 chr12 78755653 78755786 -65526703 - LTR48-int LTR ERV1 -4289 2042 1908 372 77 0 0 chr12 78755793 78755845 -65526644 + (TG)n Simple_repeat Simple_repeat 2 53 0 2062 181 36 119 chr12 78755875 78756603 -65525886 - LTR48-int LTR ERV1 -4330 1890 318 237 273 26 65 chr12 78756674 78756751 -65525738 - tRNA-Glu-GAG tRNA tRNA 0 75 2 410 156 78 120 chr12 78756757 78756924 -65525565 - LTR48-int LTR ERV1 -5129 1202 1043 4002 61 19 6 chr12 78756977 78757501 -65524988 - L1PA7 LINE L1 -5 6149 5619 7318 87 8 1 chr12 78757501 78758512 -65523977 + L1P LINE L1 4034 5051 -1095 3802 184 39 68 chr12 78758597 78759539 -65522950 - LTR48-int LTR ERV1 -5416 915 1 1491 201 353 10 chr12 78759541 78760127 -65522362 - LTR48 LTR ERV1 0 787 1 200 302 0 0 chr12 78760241 78760304 -65522185 + A-rich Low_complexity Low_complexity 1 63 0 11392 149 25 5 chr12 78761292 78763164 -65519325 + Tigger1 DNA MER2_type 2 1910 -508 2696 167 46 1 chr12 78763164 78763913 -65518576 + LTR1B LTR ERV1 3 826 0 * 2793 155 46 4 chr12 78763913 78764408 -65518081 + Tigger1 DNA MER2_type 1903 2418 0 281 293 9 9 chr12 78764925 78764944 -65517545 - L1MA10 LINE L1 0 6334 6316 2107 234 70 76 chr12 78764944 78765710 -65516779 - L1ME1 LINE L1 -9 6575 5820 2025 131 3 3 chr12 78765710 78766008 -65516481 - AluSq SINE Alu -15 298 1 2107 234 70 76 chr12 78766008 78766272 -65516217 - L1ME1 LINE L1 -764 5820 5556 1199 232 172 43 chr12 78766272 78766746 -65515743 - MLT1F LTR MaLR -2 591 1 1887 174 27 27 chr12 78767084 78767487 -65515002 + MER57A LTR ERV1 1 403 0 206 312 169 0 chr12 78767487 78767564 -65514925 - MIR SINE MIR -126 136 47 1441 146 4 8 chr12 78768813 78769060 -65513429 - L1M2 LINE L1 -707 5605 5360 * 1930 161 52 17 chr12 78769056 78769561 -65512928 - L1M2 LINE L1 -757 5389 4928 * 3130 169 47 35 chr12 78769527 78770213 -65512276 + L1MA9 LINE L1 5618 6311 -1 220 242 98 83 chr12 78770368 78770500 -65511989 - MIR SINE MIR -64 198 65 260 295 82 37 chr12 78770931 78771199 -65511290 - L1ME1 LINE L1 -1018 5546 5267 1243 301 90 30 chr12 78771201 78772716 -65509773 + L1ME LINE L1 1 1610 -4470 1734 221 66 95 chr12 78772730 78773448 -65509041 - MER61E LTR ERV1 -4 774 1 4262 249 74 52 chr12 78773452 78775563 -65506926 + L1ME LINE L1 2336 4493 -1587 1540 166 93 23 chr12 78775584 78775885 -65506604 + THE1B LTR MaLR 43 364 0 7686 105 38 4 chr12 78775887 78777011 -65505478 + THE1B-int LTR MaLR 3 1165 -415 1049 91 26 0 chr12 78777120 78777274 -65505215 + L1PB1 LINE L1 5992 6149 -2 1894 133 0 0 chr12 78777284 78777548 -65504941 + AluSx SINE Alu 1 264 -48 198 0 0 0 chr12 78777556 78777578 -65504911 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 3117 267 69 21 chr12 78777670 78779068 -65503421 - L1ME1 LINE L1 -2189 4375 2910 234 230 230 62 chr12 78779080 78779241 -65503248 - L1M4 LINE L1 -1217 4929 4742 1883 177 6 3 chr12 78779254 78779588 -65502901 - L1PA16 LINE L1 -20 6146 5812 2287 298 69 42 chr12 78779591 78781078 -65501411 - L1ME1 LINE L1 -3661 2903 1457 1309 36 0 6 chr12 78781078 78781243 -65501246 + L1PA2 LINE L1 5992 6155 0 2287 298 69 42 chr12 78781243 78782296 -65500193 - L1ME1 LINE L1 -5107 1457 3 5626 44 4 12 chr12 78783215 78783947 -65498542 + L1P LINE L1 2409 3134 -3012 200 161 36 0 chr12 78784967 78785023 -65497466 + (TATG)n Simple_repeat Simple_repeat 2 59 0 852 271 39 4 chr12 78785453 78785682 -65496807 + L1 LINE L1 2584 2820 -3326 2409 71 3 13 chr12 78785830 78786141 -65496348 + AluY SINE Alu 1 308 -3 1940 150 46 0 chr12 78786193 78786519 -65495970 - L1PB4 LINE L1 -52 6104 5764 237 167 30 30 chr12 78786519 78786585 -65495904 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 3082 128 56 11 chr12 78786594 78787284 -65495205 - L1PB4 LINE L1 -365 5791 5071 2110 195 29 0 chr12 78787281 78787723 -65494766 + L1 LINE L1 3569 4023 -2123 * 16005 48 15 1 chr12 78787823 78790646 -65491843 + L1PA5 LINE L1 3296 6160 0 31 68 0 0 chr12 78790705 78790764 -65491725 + AT_rich Low_complexity Low_complexity 1 59 0 252 0 0 0 chr12 78791725 78791753 -65490736 + (CA)n Simple_repeat Simple_repeat 1 28 0 417 39 0 0 chr12 78792308 78792359 -65490130 + (CA)n Simple_repeat Simple_repeat 2 52 0 475 181 12 0 chr12 78793041 78793124 -65489365 + AluJ/FLAM SINE Alu 1 84 -228 23 33 0 0 chr12 78793230 78793260 -65489229 + AT_rich Low_complexity Low_complexity 1 30 0 2539 20 0 3 chr12 78793471 78793764 -65488725 + AluYa5 SINE Alu 1 292 -19 201 39 0 0 chr12 78793764 78793790 -65488699 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 549 273 106 62 chr12 78793941 78794150 -65488339 - L1MEc LINE L1 -2980 3235 3037 1544 189 3 14 chr12 78794150 78794441 -65488048 + AluJb SINE Alu 1 288 -24 549 273 106 62 chr12 78794441 78794865 -65487624 - L1MEc LINE L1 -3178 3037 2574 * 1027 313 61 15 chr12 78794845 78795513 -65486976 - L1MEc LINE L1 -5121 1275 577 1985 167 43 0 chr12 78795647 78795976 -65486513 - MER7A DNA MER2_type 0 346 6 1373 185 59 17 chr12 78795985 78796321 -65486168 + MLT2C1 LTR ERVL 1 414 0 657 243 12 17 chr12 78796539 78796712 -65485777 - L1MEc LINE L1 -6182 214 43 21 0 0 0 chr12 78798639 78798660 -65483829 + AT_rich Low_complexity Low_complexity 1 21 0 182 219 0 0 chr12 78800282 78800323 -65482166 + L2 LINE L2 3273 3313 0 570 277 77 39 chr12 78800366 78800626 -65481863 + L2 LINE L2 3042 3311 -2 653 78 26 17 chr12 78801590 78801705 -65480784 + (TTCC)n Simple_repeat Simple_repeat 1 116 0 21 0 0 0 chr12 78801722 78801743 -65480746 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 78803293 78803316 -65479173 + AT_rich Low_complexity Low_complexity 1 23 0 267 193 88 0 chr12 78805258 78805315 -65477174 - MER52A LTR ERV1 -403 1352 1291 1204 230 209 43 chr12 78805376 78805984 -65476505 - LTR28 LTR ERV1 -311 709 1 1104 139 12 0 chr12 78806226 78806392 -65476097 + AluSg/x SINE Alu 137 304 -8 180 0 0 0 chr12 78806550 78806570 -65475919 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr12 78806787 78806810 -65475679 + AT_rich Low_complexity Low_complexity 1 23 0 1540 102 59 0 chr12 78807440 78807696 -65474793 + L1MA6 LINE L1 6030 6300 0 183 42 0 0 chr12 78807873 78807897 -65474592 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1982 145 0 3 chr12 78808217 78808504 -65473985 + AluSx SINE Alu 1 288 -24 270 0 0 0 chr12 78808504 78808534 -65473955 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1982 145 0 3 chr12 78808534 78808556 -65473933 + AluSx SINE Alu 288 309 -3 284 251 1 21 chr12 78808731 78808827 -65473662 - L1MEd LINE L1 -4886 1233 1153 21 0 0 0 chr12 78811053 78811074 -65471415 + AT_rich Low_complexity Low_complexity 1 21 0 1388 171 17 4 chr12 78811143 78811420 -65471069 - AluJb SINE Alu 0 326 47 21 0 0 0 chr12 78811924 78811945 -65470544 + AT_rich Low_complexity Low_complexity 1 21 0 55 16 0 0 chr12 78812223 78812285 -65470204 + AT_rich Low_complexity Low_complexity 1 62 0 491 318 63 85 chr12 78812701 78813068 -65469421 + L1ME3A LINE L1 1041 1510 -4862 1169 304 81 19 chr12 78813069 78813634 -65468855 + L1ME3A LINE L1 5556 6155 -15 365 287 93 21 chr12 78813662 78813951 -65468538 + L1ME3A LINE L1 5266 5575 -807 772 325 65 9 chr12 78814028 78814495 -65467994 + L1ME3A LINE L1 5710 6198 -200 1808 137 3 27 chr12 78815039 78815360 -65467129 - AluSq SINE Alu 0 314 1 23 33 0 0 chr12 78815641 78815671 -65466818 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr12 78815965 78815994 -65466495 + AT_rich Low_complexity Low_complexity 1 29 0 207 167 42 0 chr12 78816041 78816089 -65466400 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1165 225 100 0 chr12 78817444 78817715 -65464774 - MER2 DNA MER2_type -24 321 24 1966 164 8 19 chr12 78817865 78818237 -65464252 - L1MA4 LINE L1 -288 6012 5645 268 319 42 14 chr12 78819164 78819377 -65463112 - L1MCc LINE L1 -4921 2201 1983 23 33 0 0 chr12 78819447 78819477 -65463012 + AT_rich Low_complexity Low_complexity 1 30 0 3416 62 11 0 chr12 78820143 78820582 -65461907 - HERVL-A1 LTR ERVL -5210 444 1 2569 117 31 53 chr12 78820582 78821034 -65461455 - MLT2A1 LTR ERVL -2 442 1 737 257 43 14 chr12 78821096 78821376 -65461113 - L1MCc LINE L1 -5145 1277 990 1438 243 86 68 chr12 78821870 78822491 -65459998 - L1MCc LINE L1 -5444 978 2 264 292 25 33 chr12 78824474 78824594 -65457895 + MLT1L LTR MaLR 428 546 -69 247 216 20 0 chr12 78825978 78826029 -65456460 + MER116 DNA Mariner 1 52 -28 253 157 0 20 chr12 78827238 78827298 -65455191 - L1MD3 LINE L1 -361 7619 7389 2427 197 30 12 chr12 78827334 78827898 -65454591 - L1MA10 LINE L1 -828 5318 4745 4596 181 43 35 chr12 78827900 78828921 -65453568 + L1MA10 LINE L1 5303 6331 -3 235 238 71 24 chr12 78829016 78829100 -65453389 + MER112 DNA MER1_type 10 97 -163 357 325 65 36 chr12 78830752 78831029 -65451460 + L1 LINE L1 3489 3773 -2373 344 262 191 33 chr12 78831030 78831240 -65451249 - MLT1J1 LTR MaLR -6 440 198 270 272 12 37 chr12 78831393 78831474 -65451015 - MLT1J1 LTR MaLR -391 164 86 833 252 97 12 chr12 78831515 78831856 -65450633 - Charlie4a DNA MER1_type -138 370 1 2106 147 98 54 chr12 78833214 78833457 -65449032 - LTR1B LTR ERV1 -314 512 281 2243 120 0 13 chr12 78833457 78833774 -65448715 - AluSq SINE Alu 0 313 1 2106 147 98 54 chr12 78833774 78834007 -65448482 - LTR1B LTR ERV1 -545 281 36 1082 35 104 0 chr12 78834023 78834167 -65448322 - L1PA2 LINE L1 0 6155 5997 1253 0 0 0 chr12 78834166 78834305 -65448184 + L1PA2 LINE L1 5825 5963 -192 326 100 0 0 chr12 78834305 78834355 -65448134 - LTR1B LTR ERV1 -776 50 1 13380 149 26 24 chr12 78834358 78834569 -65447920 - HUERS-P2 LTR ERV1 0 3088 2879 279 0 0 0 chr12 78834569 78834600 -65447889 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 13380 149 26 24 chr12 78834600 78835414 -65447075 - HUERS-P2 LTR ERV1 -209 2879 2068 2147 94 4 0 chr12 78835414 78835691 -65446798 + AluSg SINE Alu 1 278 -32 13380 149 26 24 chr12 78835691 78836033 -65446456 - HUERS-P2 LTR ERV1 -1020 2068 1728 2313 109 0 0 chr12 78836033 78836345 -65446144 - AluSx SINE Alu 0 312 1 13380 149 26 24 chr12 78836345 78837205 -65445284 - HUERS-P2 LTR ERV1 -1360 1728 854 1189 237 37 35 chr12 78837196 78837698 -65444791 - HUERS-P2 LTR ERV1 -2637 599 2 * 2744 203 161 34 chr12 78837701 78838432 -65444057 - LTR1B LTR ERV1 -2 824 1 238 286 0 0 chr12 78839011 78839088 -65443401 + L1MC4 LINE L1 6624 6700 -1342 214 344 94 0 chr12 78839418 78839514 -65442975 - MIR3 SINE MIR -13 195 91 257 372 0 0 chr12 78839704 78839798 -65442691 + MIR SINE MIR 32 125 -83 189 121 0 0 chr12 78840301 78840334 -65442155 + (CAT)n Simple_repeat Simple_repeat 2 34 0 234 362 14 14 chr12 78840474 78840615 -65441874 + LTR16C LTR ERVL 349 489 -2 1571 323 166 26 chr12 78840624 78841098 -65441391 + L2 LINE L2 1551 1957 -1356 195 42 0 0 chr12 78841098 78841122 -65441367 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1571 323 166 26 chr12 78841122 78842024 -65440465 + L2 LINE L2 1957 3129 -184 2348 79 0 28 chr12 78842285 78842603 -65439886 - AluY SINE Alu -2 309 1 1975 134 7 3 chr12 78845109 78845407 -65437082 - AluSx SINE Alu -13 299 1 23 0 0 0 chr12 78845414 78845437 -65437052 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr12 78847381 78847410 -65435079 + (A)n Simple_repeat Simple_repeat 1 29 0 897 240 86 50 chr12 78847410 78847689 -65434800 + AluJb SINE Alu 1 289 -13 251 214 64 36 chr12 78848235 78848325 -65434164 + (TATATG)n Simple_repeat Simple_repeat 4 101 -46 1719 186 72 3 chr12 78848325 78848686 -65433803 - MLT1B LTR MaLR -2 388 3 251 214 64 36 chr12 78848686 78848735 -65433754 + (TATATG)n Simple_repeat Simple_repeat 101 147 0 4835 149 82 50 chr12 78849156 78850312 -65432177 + pTR5 LTR ERV1 5 581 -133 1702 208 134 20 chr12 78850593 78851088 -65431401 - MER101B LTR ERV1 -29 517 2 584 333 20 16 chr12 78852049 78852295 -65430194 + MERVL LTR ERVL 3217 3463 -2191 273 346 32 32 chr12 78853215 78853432 -65429057 + MERVL LTR ERVL 5080 5296 -189 336 108 10 49 chr12 78853846 78853924 -65428565 - MER5A DNA MER1_type -111 78 4 2171 127 0 0 chr12 78853988 78854280 -65428209 - AluSg SINE Alu -18 292 1 1847 205 80 19 chr12 78854694 78855316 -65427173 + MER67C LTR ERV1 1 710 0 21 0 0 0 chr12 78855830 78855851 -65426638 + AT_rich Low_complexity Low_complexity 1 21 0 615 166 45 45 chr12 78856209 78856366 -65426123 - L1MC2 LINE L1 0 6344 6188 827 242 76 0 chr12 78856602 78856800 -65425689 - MER20 DNA MER1_type 0 219 7 2499 154 29 2 chr12 78857581 78857996 -65424493 - MSTB LTR MaLR 0 426 1 266 352 28 48 chr12 78858016 78858161 -65424328 + MIR SINE MIR 10 151 -111 217 227 23 0 chr12 78858228 78858272 -65424217 - L2 LINE L2 -12 3260 3216 22 56 0 0 chr12 78858480 78858516 -65423973 + AT_rich Low_complexity Low_complexity 1 36 0 267 314 131 15 chr12 78861132 78861269 -65421220 - MIR SINE MIR -51 211 59 30 45 0 0 chr12 78861757 78861801 -65420688 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr12 78861817 78861839 -65420650 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr12 78862386 78862429 -65420060 + AT_rich Low_complexity Low_complexity 1 43 0 188 268 0 0 chr12 78863145 78863186 -65419303 + MER5B DNA MER1_type 1 41 -137 974 242 28 0 chr12 78864559 78864774 -65417715 - MER58A DNA MER1_type -2 222 2 283 329 94 0 chr12 78864819 78864968 -65417521 + MIR3 SINE MIR 41 203 -5 23 0 0 0 chr12 78865055 78865078 -65417411 + AT_rich Low_complexity Low_complexity 1 23 0 216 293 0 0 chr12 78865763 78865821 -65416668 - L2 LINE L2 -8 3305 3248 292 341 62 49 chr12 78866149 78866375 -65416114 - L2 LINE L2 -513 2801 2573 1197 86 5 149 chr12 78866926 78867148 -65415341 + AluSg/x SINE Alu 113 302 -7 205 130 0 43 chr12 78867235 78867281 -65415208 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1295 296 41 12 chr12 78868296 78868712 -65413777 - LTR16B LTR ERVL -2 462 35 1654 328 40 51 chr12 78869104 78869187 -65413302 - HERV16 LTR ERVL -1903 3093 3011 2235 121 0 6 chr12 78869187 78869500 -65412989 - AluSx SINE Alu -1 311 1 1654 328 40 51 chr12 78869500 78870255 -65412234 - HERV16 LTR ERVL -1985 3011 2264 2614 163 80 13 chr12 78870272 78870823 -65411666 - L1MC3 LINE L1 -8 7777 7190 234 352 0 0 chr12 78870823 78870914 -65411575 - MLT1F1 LTR MaLR -442 125 35 573 152 100 0 chr12 78870950 78871144 -65411345 - L1MC3 LINE L1 -747 7038 6706 826 344 35 19 chr12 78871176 78871766 -65410723 - HERV16 LTR ERVL -3480 2284 1612 324 325 0 16 chr12 78871938 78872064 -65410425 - HERV16 LTR ERVL -3625 1371 1248 598 335 103 10 chr12 78872119 78872420 -65410069 - HERV16 LTR ERVL -3861 1135 807 2179 151 20 3 chr12 78873557 78873914 -65408575 + MSTB1 LTR MaLR 14 376 -56 5085 90 3 3 chr12 78873922 78874632 -65407857 - L1PA8 LINE L1 -8 6164 5455 2002 98 44 0 chr12 78874632 78874992 -65407497 + L1PA8 LINE L1 5069 5438 -716 453 92 40 13 chr12 78874992 78875068 -65407421 + MSTB1 LTR MaLR 352 429 -3 2456 75 0 0 chr12 78875473 78875779 -65406710 + AluY SINE Alu 6 311 0 288 0 0 0 chr12 78876323 78876355 -65406134 + (CA)n Simple_repeat Simple_repeat 2 33 0 7247 33 4 0 chr12 78876810 78877888 -65404601 + L1PA4 LINE L1 5095 6177 0 1020 252 230 12 chr12 78878056 78878571 -65403918 - MLT1G LTR MaLR 0 590 6 231 88 0 0 chr12 78878681 78878715 -65403774 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 736 270 88 0 chr12 78878801 78879005 -65403484 + MIR SINE MIR 11 232 -30 304 323 55 31 chr12 78879923 78880050 -65402439 - L2 LINE L2 -2 3270 3141 2662 113 3 0 chr12 78880131 78880502 -65401987 + THE1C LTR MaLR 4 375 0 9408 122 48 25 chr12 78880502 78882046 -65400443 + THE1C-int LTR MaLR 1 1580 0 2592 126 3 0 chr12 78882046 78882420 -65400069 + THE1C LTR MaLR 1 375 0 279 0 0 0 chr12 78883571 78883602 -65398887 + (CA)n Simple_repeat Simple_repeat 1 62 0 279 0 0 0 chr12 78883602 78883633 -65398856 + (CA)n Simple_repeat Simple_repeat 2 32 0 368 347 41 24 chr12 78883661 78883831 -65398658 - MLT1K LTR MaLR -219 369 197 758 254 69 29 chr12 78885255 78885531 -65396958 + LTR16A1 LTR ERVL 171 457 0 7657 205 38 3 chr12 78886007 78887727 -65394762 + L1 LINE L1 2701 4479 -1667 588 116 0 0 chr12 78887932 78888027 -65394462 + L1MA4 LINE L1 6198 6292 -8 38 0 0 0 chr12 78888039 78888077 -65394412 + AT_rich Low_complexity Low_complexity 1 38 0 599 311 23 40 chr12 78888198 78888497 -65393992 - LTR16A LTR ERVL 0 450 157 252 59 0 0 chr12 78888597 78888631 -65393858 + (TG)n Simple_repeat Simple_repeat 2 35 0 728 339 39 39 chr12 78889522 78889962 -65392527 - LTR16A LTR ERVL -9 441 2 468 275 0 22 chr12 78890042 78890180 -65392309 + L2 LINE L2 3179 3313 0 271 388 107 17 chr12 78890748 78890926 -65391563 + L2 LINE L2 2855 3048 -265 25 0 0 0 chr12 78891187 78891212 -65391277 + AT_rich Low_complexity Low_complexity 1 25 0 233 262 299 0 chr12 78891682 78891789 -65390700 - L2 LINE L2 -1 3312 3174 207 357 71 24 chr12 78891851 78891906 -65390583 - L2 LINE L2 0 3272 3221 2225 98 0 0 chr12 78891906 78892201 -65390288 + AluSc SINE Alu 1 295 -14 207 357 71 24 chr12 78892201 78892271 -65390218 - L2 LINE L2 -51 3221 3141 1990 87 43 4 chr12 78892478 78892755 -65389734 + AluY SINE Alu 5 292 -19 364 75 0 86 chr12 78892756 78892849 -65389640 + (TA)n Simple_repeat Simple_repeat 2 86 0 2391 84 0 0 chr12 78893203 78893514 -65388975 - AluSx SINE Alu -1 311 1 1148 172 29 53 chr12 78893728 78893996 -65388493 - L1MA8 LINE L1 -265 6026 5761 692 276 89 69 chr12 78895057 78895549 -65386940 + L2 LINE L2 2812 3313 0 1107 303 81 32 chr12 78897956 78898523 -65383966 + L1MC5 LINE L1 5320 5914 -1894 295 275 124 56 chr12 78898669 78899155 -65383334 + L1MC5 LINE L1 6300 6829 -985 1813 150 13 10 chr12 78899509 78899941 -65382548 + LTR69 LTR ERVL 1 478 -110 * 2037 110 17 10 chr12 78899933 78900232 -65382257 - THE1B LTR MaLR -20 344 44 453 188 12 0 chr12 78900245 78900325 -65382164 + LTR69 LTR ERVL 498 578 -10 760 302 0 15 chr12 78900333 78900538 -65381951 - MIR SINE MIR -56 206 5 22 0 0 0 chr12 78900758 78900780 -65381709 + AT_rich Low_complexity Low_complexity 1 22 0 423 137 0 14 chr12 78903763 78903836 -65378653 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 22 35 0 0 chr12 78904027 78904056 -65378433 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr12 78904222 78904259 -65378230 + AT_rich Low_complexity Low_complexity 1 37 0 2275 99 3 0 chr12 78904649 78904943 -65377546 + AluY SINE Alu 1 295 -16 707 291 5 10 chr12 78905045 78905248 -65377241 + MIR SINE MIR 37 238 -24 2824 196 28 0 chr12 78906471 78906965 -65375524 - MLT2B3 LTR ERVL -46 508 1 23 54 0 0 chr12 78907138 78907175 -65375314 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr12 78908014 78908049 -65374440 + AT_rich Low_complexity Low_complexity 1 35 0 1770 133 3 39 chr12 78908057 78908193 -65374296 + AluSg SINE Alu 5 144 -173 2441 78 0 0 chr12 78908193 78908500 -65373989 + AluY SINE Alu 1 307 -4 1770 133 3 39 chr12 78908500 78908686 -65373803 + AluSg SINE Alu 144 317 0 1363 209 49 6 chr12 78908955 78909281 -65373208 - MER46B DNA MER2_type 0 236 22 26 50 0 0 chr12 78909693 78909733 -65372756 + AT_rich Low_complexity Low_complexity 1 40 0 25 51 0 0 chr12 78909936 78909975 -65372514 + AT_rich Low_complexity Low_complexity 1 39 0 31 26 0 0 chr12 78910094 78910132 -65372357 + AT_rich Low_complexity Low_complexity 1 38 0 550 251 54 105 chr12 78910569 78910672 -65371817 - L1ME LINE L1 -486 5684 5577 752 167 7 0 chr12 78910672 78910822 -65371667 + L1MB3 LINE L1 6030 6180 -3 550 251 54 105 chr12 78910822 78911393 -65371096 - L1ME LINE L1 -593 5577 5054 27 0 0 0 chr12 78911573 78911600 -65370889 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr12 78911967 78912002 -65370487 + AT_rich Low_complexity Low_complexity 1 35 0 564 248 121 0 chr12 78912021 78912219 -65370270 + MER46C DNA MER2_type 20 241 -97 313 291 129 13 chr12 78912262 78912564 -65369925 + L1M4 LINE L1 3048 3384 -2762 589 237 76 36 chr12 78912688 78912912 -65369577 + L1MEc LINE L1 76 308 -6088 * 11108 194 14 27 chr12 78912909 78915801 -65366688 - L1PA10 LINE L1 -3027 3434 559 13120 143 27 0 chr12 78915801 78918783 -65363706 + L1PA10 LINE L1 3433 6471 -12 27 0 0 0 chr12 78918783 78918810 -65363679 + AT_rich Low_complexity Low_complexity 1 27 0 1323 259 18 34 chr12 78918890 78919330 -65363159 + L1MEc LINE L1 2415 2847 -3368 310 376 38 13 chr12 78919408 78919565 -65362924 - MIR3 SINE MIR -35 173 13 1333 223 36 40 chr12 78919632 78920107 -65362382 + L1MEc LINE L1 2850 3322 -2893 556 240 38 16 chr12 78920278 78920461 -65362028 + MER53 DNA DNA 3 189 0 382 313 30 52 chr12 78921016 78921249 -65361240 + L1ME4a LINE L1 5737 5964 -157 387 225 106 66 chr12 78921303 78921454 -65361035 + LTR40a LTR ERVL 1 157 -362 663 299 55 25 chr12 78921618 78921892 -65360597 + LTR40a LTR ERVL 238 519 0 399 316 68 32 chr12 78921939 78922217 -65360272 - MLT1I LTR MaLR -54 355 68 380 264 54 36 chr12 78922336 78922503 -65359986 + L1ME4a LINE L1 5930 6099 -22 287 181 72 14 chr12 78922504 78922642 -65359847 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 21 36 0 0 chr12 78923662 78923690 -65358799 + AT_rich Low_complexity Low_complexity 1 28 0 227 373 39 26 chr12 78923864 78924017 -65358472 + L2 LINE L2 2905 3059 -213 653 306 60 0 chr12 78924337 78924520 -65357969 + MIR SINE MIR 41 234 -28 799 379 47 12 chr12 78924771 78925279 -65357210 - L2 LINE L2 -4 3309 2783 556 335 53 87 chr12 78925313 78925517 -65356972 - L2 LINE L2 -634 2680 2471 2014 125 42 33 chr12 78925517 78925878 -65356611 - THE1B LTR MaLR 0 364 1 556 335 53 87 chr12 78925878 78925975 -65356514 - L2 LINE L2 -843 2471 2372 798 41 0 0 chr12 78925975 78926073 -65356416 + L1PA5 LINE L1 6049 6146 -8 556 335 53 87 chr12 78926073 78926239 -65356250 - L2 LINE L2 -942 2372 2228 1086 135 73 100 chr12 78929089 78929349 -65353140 + MLT1B LTR MaLR 138 390 0 1720 144 15 0 chr12 78929572 78929836 -65352653 + MER50 LTR ERV1 455 722 -12 2037 105 52 0 chr12 78930111 78930397 -65352092 + AluSp SINE Alu 1 301 -12 297 233 68 41 chr12 78930401 78930547 -65351942 - L1MEd LINE L1 -4943 1176 1027 1798 309 100 29 chr12 78931103 78931934 -65350555 - L2 LINE L2 -433 2881 1992 261 79 0 0 chr12 78931937 78931975 -65350514 + L1MA4 LINE L1 6257 6294 -6 29 47 0 0 chr12 78932019 78932062 -65350427 + AT_rich Low_complexity Low_complexity 1 43 0 4785 109 19 0 chr12 78932269 78932947 -65349542 + LTR8 LTR ERV1 1 691 0 379 275 120 12 chr12 78933027 78933194 -65349295 - L2 LINE L2 -1496 1818 1634 947 307 123 45 chr12 78933258 78933886 -65348603 - L2 LINE L2 -2114 1200 524 1934 118 0 67 chr12 78933920 78934234 -65348255 + AluSg SINE Alu 1 293 -17 926 284 28 58 chr12 78934245 78934604 -65347885 + HsTC2a DNA Tc2 29 376 -368 4894 136 13 5 chr12 78934606 78935385 -65347104 + L1PA15 LINE L1 5380 6164 -1 639 273 38 21 chr12 78935441 78935730 -65346759 + HsTC2a DNA Tc2 384 677 -65 180 232 161 18 chr12 78935908 78935964 -65346525 - MER5B DNA MER1_type -109 69 6 184 234 40 145 chr12 78936313 78936437 -65346052 - MIR SINE MIR -19 243 133 492 41 14 0 chr12 78937365 78937438 -65345051 - L1P LINE L1 -3996 2150 2077 471 321 48 20 chr12 78938981 78939339 -65343150 + L1MC/D LINE L1 5348 5715 -2093 1425 269 24 69 chr12 78939383 78940079 -65342410 - L1ME1 LINE L1 -10 6168 5501 658 294 118 8 chr12 78940078 78940476 -65342013 + L1M4c LINE L1 1211 1652 -4732 * 619 283 105 60 chr12 78940528 78940878 -65341611 + HsTC2a DNA Tc2 3 373 -1527 13124 45 0 0 chr12 78940878 78943273 -65339216 + L1PA5 LINE L1 3753 6152 -2 619 283 105 60 chr12 78943273 78943304 -65339185 + HsTC2a DNA Tc2 373 401 -343 371 221 55 24 chr12 78943344 78943471 -65339018 + HsTC2a DNA Tc2 482 612 -130 24 32 0 0 chr12 78943527 78943558 -65338931 + AT_rich Low_complexity Low_complexity 1 31 0 1465 223 48 17 chr12 78943855 78944209 -65338280 + MLT1A1 LTR MaLR 1 365 0 30 27 0 0 chr12 78944349 78944386 -65338103 + AT_rich Low_complexity Low_complexity 1 37 0 1990 84 0 91 chr12 78945079 78945438 -65337051 + AluSg SINE Alu 1 331 0 26 0 0 0 chr12 78945787 78945813 -65336676 + AT_rich Low_complexity Low_complexity 1 26 0 1661 221 51 23 chr12 78946156 78946590 -65335899 - MLT1C LTR MaLR 0 467 22 229 238 117 81 chr12 78946670 78946893 -65335596 - L1MC4a LINE L1 -1755 6053 5823 250 295 16 111 chr12 78947185 78947375 -65335114 + MIR SINE MIR 91 262 0 338 311 53 31 chr12 78947759 78947987 -65334502 + L1ME LINE L1 4369 4601 -1545 450 318 108 39 chr12 78948764 78949273 -65333216 + L1ME LINE L1 4806 5349 -797 225 300 56 22 chr12 78949350 78949440 -65333049 + L1ME LINE L1 5533 5625 -496 1780 139 110 30 chr12 78949454 78949791 -65332698 - THE1B LTR MaLR 0 364 1 42365 35 24 2 chr12 78949815 78955835 -65326654 - L1PA3 LINE L1 0 6155 1 23 33 0 0 chr12 78955950 78955980 -65326509 + AT_rich Low_complexity Low_complexity 1 30 0 303 317 58 69 chr12 78957009 78957356 -65325133 + MLT1J LTR MaLR 95 437 -74 1923 149 36 30 chr12 78957494 78957856 -65324633 + THE1B LTR MaLR 1 364 0 28 48 0 0 chr12 78958279 78958321 -65324168 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr12 78959503 78959527 -65322962 + AT_rich Low_complexity Low_complexity 1 24 0 351 303 8 8 chr12 78959555 78959677 -65322812 + L1MC3 LINE L1 60 181 -6215 446 0 19 0 chr12 78959881 78959935 -65322554 + (TTA)n Simple_repeat Simple_repeat 2 56 0 1121 267 122 109 chr12 78960445 78961529 -65320960 - MER52A LTR ERV1 0 1755 1 909 239 82 24 chr12 78961670 78962050 -65320439 + L1MC3 LINE L1 4500 4901 -1314 6014 219 80 19 chr12 78962538 78963533 -65318956 + L1MC3 LINE L1 6008 7157 -697 3136 74 60 18 chr12 78963533 78963968 -65318521 - MLT2A2 LTR ERVL 0 453 1 6014 219 80 19 chr12 78963968 78964704 -65317785 + L1MC3 LINE L1 7157 7846 -8 567 321 96 8 chr12 78965479 78965719 -65316770 - L2 LINE L2 -364 2950 2690 2586 145 12 2 chr12 78965868 78966282 -65316207 - HSMAR2 DNA Mariner -882 420 3 2024 155 19 27 chr12 78966881 78967248 -65315241 - THE1B LTR MaLR 0 364 1 1114 342 89 32 chr12 78967796 78968341 -65314148 - L2 LINE L2 0 3313 2801 255 114 0 0 chr12 78968341 78968385 -65314104 + (TG)n Simple_repeat Simple_repeat 1 44 0 1114 342 89 32 chr12 78968385 78968872 -65313617 - L2 LINE L2 -512 2801 2230 32 26 0 0 chr12 78969642 78969681 -65312808 + AT_rich Low_complexity Low_complexity 1 39 0 2437 127 67 5 chr12 78971194 78971595 -65310894 - MSTB LTR MaLR 0 426 1 395 296 159 11 chr12 78972053 78972242 -65310247 - MIR SINE MIR -43 219 3 313 242 83 23 chr12 78973239 78973371 -65309118 - Looper DNA T2_type 0 1558 1419 24 100 0 0 chr12 78973396 78973476 -65309013 + AT_rich Low_complexity Low_complexity 1 80 0 2339 199 56 16 chr12 78973494 78974052 -65308437 - Looper DNA T2_type -598 960 381 580 243 42 0 chr12 78974068 78974212 -65308277 - MER58B DNA MER1_type -8 333 184 1210 216 80 110 chr12 78974227 78974654 -65307835 - MLT2B1 LTR ERVL 0 414 1 1288 150 18 5 chr12 78974654 78974908 -65307581 - ERVL-B1 LTR ERVL -7 5757 5472 991 230 91 11 chr12 78974974 78975326 -65307163 - Looper DNA T2_type -1176 382 3 2233 103 0 10 chr12 78975810 78976110 -65306379 - AluSc SINE Alu -12 297 1 203 152 0 0 chr12 78976456 78976489 -65306000 + GA-rich Low_complexity Low_complexity 4 36 0 235 295 238 9 chr12 78976938 78977043 -65305446 + MIR SINE MIR 18 146 -62 446 177 27 136 chr12 78977510 78977730 -65304759 + L1MC4 LINE L1 7844 8039 -3 2107 172 11 0 chr12 78977992 78978346 -65304143 + MER47A DNA MER2_type 8 365 -1 251 295 27 45 chr12 78979419 78979531 -65302958 - MIR3 SINE MIR -95 113 4 2263 84 0 7 chr12 78979856 78980152 -65302337 + AluY SINE Alu 1 294 -17 350 21 21 0 chr12 78980155 78980202 -65302287 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 270 268 312 0 chr12 78980757 78980895 -65301594 + MER5A DNA MER1_type 9 189 0 298 315 137 30 chr12 78981019 78981216 -65301273 - MIR SINE MIR -30 232 15 2506 52 10 3 chr12 78981339 78981644 -65300845 + AluY SINE Alu 1 307 -4 1800 163 139 13 chr12 78981848 78982228 -65300261 + MSTA LTR MaLR 1 428 0 1401 175 3 94 chr12 78982252 78982583 -65299906 + AluJo SINE Alu 1 301 -1 209 238 97 83 chr12 78982887 78982964 -65299525 - MIR SINE MIR 0 262 188 2824 3 0 10 chr12 78982964 78983278 -65299211 - AluYa5 SINE Alu 0 311 1 209 238 97 83 chr12 78983278 78983389 -65299100 - MIR SINE MIR -74 188 35 226 259 0 0 chr12 78986346 78986400 -65296089 + T-rich Low_complexity Low_complexity 1 54 0 213 39 0 0 chr12 78987423 78987449 -65295040 + (TG)n Simple_repeat Simple_repeat 2 27 0 218 304 40 64 chr12 78989493 78989618 -65292871 - MIR SINE MIR -66 142 21 490 310 94 44 chr12 78989908 78990247 -65292242 + L1MB5 LINE L1 3742 4097 -2049 297 307 143 12 chr12 78990302 78990729 -65291760 + L1MB5 LINE L1 4211 4693 -1453 262 304 72 16 chr12 78990912 78991106 -65291383 + L1ME LINE L1 4981 5185 -961 371 288 96 22 chr12 78991186 78991493 -65290996 + L1ME LINE L1 5312 5635 -527 265 284 0 0 chr12 78991793 78991867 -65290622 + L1MEd LINE L1 71 144 -5975 312 262 93 67 chr12 78992514 78992739 -65289750 + L1MEd LINE L1 782 1012 -5107 1040 195 221 12 chr12 78992744 78993088 -65289401 + Tigger6a DNA MER2_type 269 684 -399 1950 123 18 21 chr12 78993088 78993373 -65289116 + AluSx SINE Alu 1 284 -28 347 190 181 35 chr12 78993404 78993520 -65288969 + MLT2C1 LTR ERVL 44 176 -221 * 1869 214 72 56 chr12 78993437 78993975 -65288514 + MLT1E2 LTR MaLR 80 626 0 1440 171 30 108 chr12 78993980 78994100 -65288389 + Tigger6a DNA MER2_type 688 816 -781 2043 127 9 29 chr12 78994100 78994416 -65288073 - AluSx SINE Alu 0 312 3 1440 171 30 108 chr12 78994416 78994723 -65287766 + Tigger6a DNA MER2_type 816 1082 -1 251 342 100 0 chr12 78995102 78995222 -65287267 + MIR SINE MIR 49 180 -82 218 258 0 97 chr12 78995271 78995364 -65287125 - L2 LINE L2 -225 3047 2964 209 208 21 0 chr12 78995840 78995888 -65286601 + (CA)n Simple_repeat Simple_repeat 1 49 0 332 278 96 17 chr12 78996205 78996320 -65286169 + MIR3 SINE MIR 82 205 -3 197 326 47 39 chr12 78996495 78996624 -65285865 + L2 LINE L2 2236 2365 -949 42 36 0 0 chr12 78997933 78997989 -65284500 + AT_rich Low_complexity Low_complexity 1 56 0 2349 243 11 40 chr12 78998065 78998634 -65283855 + MLT2B3 LTR ERVL 3 554 0 1001 235 86 10 chr12 78999057 78999359 -65283130 - L1MB5 LINE L1 -1260 4886 4562 * 3986 216 11 25 chr12 78999352 78999527 -65282962 + L1MB5 LINE L1 4884 5060 -1114 2491 65 0 0 chr12 78999527 78999833 -65282656 + AluY SINE Alu 1 306 -5 3986 216 11 25 chr12 78999833 79000958 -65281531 + L1MB5 LINE L1 5060 6166 -8 212 275 175 25 chr12 79001102 79001222 -65281267 + L2 LINE L2 3153 3290 -23 2103 169 0 0 chr12 79001652 79002018 -65280471 - MER47A DNA MER2_type 0 366 1 770 250 85 35 chr12 79003069 79003445 -65279044 - Charlie2a DNA MER1_type -1231 1631 1237 21 0 0 0 chr12 79003558 79003579 -65278910 + AT_rich Low_complexity Low_complexity 1 21 0 2341 72 16 3 chr12 79003780 79004086 -65278403 - AluY SINE Alu -1 310 1 1641 163 47 68 chr12 79004579 79004782 -65277707 - THE1C LTR MaLR 0 375 182 2304 60 17 17 chr12 79004782 79005081 -65277408 - AluY SINE Alu -12 299 1 1641 163 47 68 chr12 79005081 79005257 -65277232 - THE1C LTR MaLR -193 182 4 9257 134 7 51 chr12 79005260 79006910 -65275579 - THE1C-int LTR MaLR 0 1580 3 1702 160 73 22 chr12 79006912 79007269 -65275220 - THE1C LTR MaLR 0 375 1 23 54 0 0 chr12 79007306 79007343 -65275146 + AT_rich Low_complexity Low_complexity 1 37 0 1068 228 107 51 chr12 79008073 79008446 -65274043 + MSTD LTR MaLR 1 394 -2 1612 167 0 43 chr12 79008560 79008841 -65273648 - AluJo SINE Alu -43 269 1 1778 177 0 3 chr12 79008845 79009133 -65273356 - AluJb SINE Alu -11 301 15 3231 165 30 28 chr12 79009914 79010193 -65272296 + MER73 LTR ERVL 18 295 -349 405 0 0 0 chr12 79010193 79010238 -65272251 + (GA)n Simple_repeat Simple_repeat 2 46 0 3231 165 30 28 chr12 79010238 79010565 -65271924 + MER73 LTR ERVL 295 625 -19 506 221 30 15 chr12 79010963 79011094 -65271395 - MER94 DNA DNA -1 133 1 339 242 74 32 chr12 79012620 79012715 -65269774 - MIR SINE MIR -83 179 81 1444 232 108 42 chr12 79012739 79013263 -65269226 - MLT1E3 LTR MaLR -8 616 73 378 0 0 0 chr12 79013263 79013305 -65269184 + (CA)n Simple_repeat Simple_repeat 1 42 0 1444 232 108 42 chr12 79013305 79013384 -65269105 - MLT1E3 LTR MaLR -551 73 1 278 170 0 0 chr12 79013784 79013837 -65268652 - MLT2A2 LTR ERVL -1 452 400 363 167 0 0 chr12 79013839 79013905 -65268584 + (TCTCTG)n Simple_repeat Simple_repeat 4 69 0 231 114 0 0 chr12 79013906 79013941 -65268548 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 249 280 0 0 chr12 79013971 79014046 -65268443 + (TA)n Simple_repeat Simple_repeat 1 75 0 1935 205 56 81 chr12 79014048 79014569 -65267920 - MLT2B3 LTR ERVL -46 508 1 304 242 273 0 chr12 79014808 79014907 -65267582 + L2 LINE L2 3184 3309 -4 29 28 0 0 chr12 79015074 79015110 -65267379 + AT_rich Low_complexity Low_complexity 1 36 0 262 219 79 128 chr12 79016269 79016433 -65266056 + MIR SINE MIR 63 218 -44 28 0 0 0 chr12 79016751 79016779 -65265710 + AT_rich Low_complexity Low_complexity 1 28 0 1729 192 24 0 chr12 79017262 79017590 -65264899 - MER44D DNA MER2_type 0 609 4 24 67 0 0 chr12 79017815 79017860 -65264629 + AT_rich Low_complexity Low_complexity 1 45 0 189 196 0 0 chr12 79018205 79018256 -65264233 + (TA)n Simple_repeat Simple_repeat 2 52 0 14350 163 29 11 chr12 79018275 79020940 -65261549 + Tigger2 DNA MER2_type 4 2718 0 1789 151 67 22 chr12 79021477 79021835 -65260654 + THE1C LTR MaLR 1 374 -1 2096 122 0 0 chr12 79022070 79022374 -65260115 + AluSc SINE Alu 1 304 0 255 377 16 25 chr12 79022393 79022515 -65259974 + MIR SINE MIR 23 143 -65 1911 183 26 8 chr12 79022795 79023178 -65259311 + MLT1B LTR MaLR 1 390 0 2298 97 3 3 chr12 79023309 79023618 -65258871 + AluSc SINE Alu 1 309 0 183 129 0 0 chr12 79024265 79024296 -65258193 + (A)n Simple_repeat Simple_repeat 1 31 0 209 333 53 61 chr12 79024463 79024577 -65257912 - L2 LINE L2 0 3313 3201 * 216 393 52 0 chr12 79024573 79024708 -65257781 + L2 LINE L2 2876 3017 -296 678 229 119 14 chr12 79024960 79025170 -65257319 + MIR SINE MIR 1 232 -30 523 253 31 6 chr12 79027350 79027512 -65254977 + LTR23 LTR ERV1 272 437 0 21 71 0 0 chr12 79027553 79027595 -65254894 + AT_rich Low_complexity Low_complexity 1 42 0 6281 135 62 43 chr12 79029310 79029781 -65252708 - Tigger3b DNA MER2_type -1802 1226 765 1927 114 27 30 chr12 79029781 79030079 -65252410 - AluSq SINE Alu -16 297 1 6281 135 62 43 chr12 79030079 79030479 -65252010 - Tigger3b DNA MER2_type -2263 765 324 605 169 99 42 chr12 79030479 79030621 -65251868 - FRAM SINE Alu -16 150 1 6281 135 62 43 chr12 79030621 79030952 -65251537 - Tigger3b DNA MER2_type -2704 324 1 1360 181 10 73 chr12 79031887 79032201 -65250288 + AluJo SINE Alu 3 296 -16 208 326 105 0 chr12 79032645 79032740 -65249749 - L2 LINE L2 -36 3236 3132 368 291 74 58 chr12 79032834 79033092 -65249397 - L1MDa LINE L1 -6214 326 65 9583 74 12 59 chr12 79033820 79035275 -65247214 - SVA Other Other 0 1386 1 557 226 49 24 chr12 79035382 79035546 -65246943 + MER3 DNA MER1_type 1 168 -41 1734 163 4 0 chr12 79035563 79035827 -65246662 + AluJb SINE Alu 24 288 -24 444 251 88 14 chr12 79035946 79036109 -65246380 - MLT1I LTR MaLR -7 402 247 29 70 0 0 chr12 79036590 79036647 -65245842 + AT_rich Low_complexity Low_complexity 1 57 0 356 328 23 28 chr12 79036785 79036962 -65245527 - MIR SINE MIR -16 246 71 22 56 0 0 chr12 79037622 79037658 -65244831 + AT_rich Low_complexity Low_complexity 1 36 0 3081 223 71 22 chr12 79038771 79039672 -65242817 - L1ME1 LINE L1 -5 6161 5219 1158 254 54 45 chr12 79039683 79040124 -65242365 + L1M4 LINE L1 4678 5122 -1024 204 328 0 0 chr12 79040163 79040227 -65242262 + MIR SINE MIR 166 229 -33 670 222 0 60 chr12 79040841 79041008 -65241481 - AluSg/x SINE Alu -18 292 136 21 0 0 0 chr12 79043252 79043273 -65239216 + AT_rich Low_complexity Low_complexity 1 21 0 551 359 47 0 chr12 79043873 79044107 -65238382 + MIR SINE MIR 1 245 -17 308 93 0 0 chr12 79044768 79044811 -65237678 + AluSg/x SINE Alu 171 213 -89 770 131 0 16 chr12 79044812 79044934 -65237555 + AluSp/q SINE Alu 177 296 -17 22 0 0 0 chr12 79045516 79045538 -65236951 + AT_rich Low_complexity Low_complexity 1 22 0 321 26 0 0 chr12 79045677 79045715 -65236774 + (TG)n Simple_repeat Simple_repeat 2 39 0 8783 157 9 51 chr12 79045730 79047021 -65235468 + THE1-int LTR MaLR 4 1215 -365 3217 117 2 0 chr12 79047021 79047473 -65235016 - MLT2A2 LTR ERVL 0 453 1 8783 157 9 51 chr12 79047473 79047794 -65234695 + THE1-int LTR MaLR 1215 1548 -32 241 154 0 0 chr12 79047799 79047838 -65234651 - MSTA LTR MaLR -389 39 1 458 322 91 8 chr12 79048928 79049170 -65233319 + MIR SINE MIR 1 262 0 231 276 40 0 chr12 79049237 79049313 -65233176 - MER67D LTR ERV1 -4 510 432 1146 190 225 3 chr12 79049353 79049534 -65232955 - MER67D LTR ERV1 -161 353 213 2729 172 38 6 chr12 79049534 79050035 -65232454 + LTR44 LTR ERV1 3 519 0 1146 190 225 3 chr12 79050035 79050142 -65232347 - MER67D LTR ERV1 -301 213 1 409 322 160 51 chr12 79051054 79051678 -65230811 + L3 LINE CR1 714 1405 -172 208 314 135 32 chr12 79052020 79052176 -65230313 + MIR SINE MIR 20 191 -71 2188 99 3 26 chr12 79052980 79053293 -65229196 + AluSx SINE Alu 1 306 -6 1121 151 63 20 chr12 79053294 79053546 -65228943 + L1MA8 LINE L1 6027 6289 -2 462 291 108 14 chr12 79053776 79053989 -65228500 + MIR SINE MIR 1 233 -29 31 44 0 0 chr12 79054430 79054475 -65228014 + AT_rich Low_complexity Low_complexity 1 45 0 1986 143 0 3 chr12 79055301 79055602 -65226887 - AluJb SINE Alu -8 304 5 279 302 42 21 chr12 79055804 79055900 -65226589 - MER5A DNA MER1_type -1 188 91 23 0 0 0 chr12 79056009 79056032 -65226457 + AT_rich Low_complexity Low_complexity 1 23 0 182 393 47 0 chr12 79056443 79056550 -65225939 + L2 LINE L2 2208 2319 -995 427 292 101 34 chr12 79056965 79057174 -65225315 + MIR SINE MIR 8 230 -32 505 160 0 27 chr12 79061459 79061725 -65220764 + (TA)n Simple_repeat Simple_repeat 1 258 0 447 180 5 26 chr12 79061745 79062176 -65220313 + (TA)n Simple_repeat Simple_repeat 1 421 0 302 207 0 24 chr12 79062190 79062354 -65220135 + (TA)n Simple_repeat Simple_repeat 2 161 0 210 190 7 35 chr12 79062422 79062564 -65219925 + (TA)n Simple_repeat Simple_repeat 1 138 0 407 348 33 26 chr12 79062936 79063120 -65219369 - MIR SINE MIR -62 146 5 236 220 88 0 chr12 79063399 79063490 -65218999 - L1ME4a LINE L1 -2 6119 6021 908 314 23 19 chr12 79063899 79064208 -65218281 + LTR16A LTR ERVL 141 450 0 24 53 0 0 chr12 79064878 79064916 -65217573 + AT_rich Low_complexity Low_complexity 1 38 0 2092 165 107 2 chr12 79065209 79065628 -65216861 + ERVL-B3 LTR ERVL 3690 4152 -1612 * 2408 156 123 9 chr12 79065610 79066251 -65216238 + ERVL-B3 LTR ERVL 4949 5752 -12 1673 249 40 50 chr12 79066258 79066783 -65215706 + MLT2B3 LTR ERVL 3 522 -32 202 189 0 0 chr12 79067242 79067279 -65215210 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 192 40 0 0 chr12 79067765 79067790 -65214699 + (CA)n Simple_repeat Simple_repeat 2 26 0 218 267 17 0 chr12 79068557 79068617 -65213872 + CT-rich Low_complexity Low_complexity 4 64 0 24 67 0 0 chr12 79068878 79068923 -65213566 + AT_rich Low_complexity Low_complexity 1 45 0 4946 219 78 11 chr12 79069516 79071292 -65211197 + L1MC1 LINE L1 4406 6315 -18 1998 156 17 8 chr12 79071299 79071657 -65210832 - MER46B DNA MER2_type 0 236 1 735 277 179 9 chr12 79071670 79072100 -65210389 - Charlie7 DNA MER1_type -626 1986 1484 237 294 29 59 chr12 79072276 79072446 -65210043 - Charlie7 DNA MER1_type -2439 173 9 947 188 65 0 chr12 79072495 79072724 -65209765 - MER33 DNA MER1_type -28 296 53 1812 141 13 0 chr12 79072769 79073068 -65209421 + L1MB1 LINE L1 5861 6163 -5 351 123 15 0 chr12 79073072 79073137 -65209352 - L1PA16 LINE L1 -2 6164 6099 556 139 0 0 chr12 79073137 79073223 -65209266 - AluY SINE Alu -21 290 205 10228 219 20 59 chr12 79073223 79074113 -65208376 - L1PA15 LINE L1 -53 6763 5840 180 0 0 0 chr12 79074113 79074133 -65208356 + (TTG)n Simple_repeat Simple_repeat 2 21 0 10228 219 20 59 chr12 79074133 79075350 -65207139 - L1PA15 LINE L1 -976 5840 4577 10907 94 2 1 chr12 79075350 79077666 -65204823 - L1PA7 LINE L1 0 6154 3834 10228 219 20 59 chr12 79077666 79081245 -65201244 - L1PA15 LINE L1 -2239 4577 1289 350 113 0 16 chr12 79081341 79081403 -65201086 + (TCTCC)n Simple_repeat Simple_repeat 2 62 0 2217 92 7 3 chr12 79081412 79081706 -65200783 - AluSg SINE Alu -13 297 3 826 161 15 0 chr12 79082291 79082428 -65200061 - AluSg/x SINE Alu -3 309 171 476 105 13 0 chr12 79083113 79083189 -65199300 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 5396 166 27 23 chr12 79083511 79085232 -65197257 + L1MA8 LINE L1 4295 6033 -258 2161 116 0 10 chr12 79085232 79085534 -65196955 - AluSx SINE Alu -11 301 3 5396 166 27 23 chr12 79085534 79085788 -65196701 + L1MA8 LINE L1 6033 6285 -6 1060 113 13 7 chr12 79086739 79086890 -65195599 + AluSg SINE Alu 1 152 -158 255 247 49 0 chr12 79087098 79087179 -65195310 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 300 27 0 0 chr12 79087430 79087467 -65195022 + (GA)n Simple_repeat Simple_repeat 2 38 0 861 270 127 8 chr12 79087593 79087845 -65194644 + MER69 DNA AcHobo 2 283 -2243 347 221 67 10 chr12 79087833 79087937 -65194552 + MER69 DNA AcHobo 1452 1561 -965 * 1133 293 44 42 chr12 79087937 79088371 -65194118 + L1PA13 LINE L1 1021 1455 -5332 231 223 85 112 chr12 79088696 79088920 -65193569 - L1MDa LINE L1 -4604 1525 1308 378 298 72 38 chr12 79088962 79089197 -65193292 - L1MDa LINE L1 -4862 1257 1015 1465 253 41 12 chr12 79089278 79089795 -65192694 - L1MCa LINE L1 -2587 3839 3308 1058 225 63 27 chr12 79089807 79089834 -65192655 - L1MCa LINE L1 -3623 2803 2778 1937 159 0 0 chr12 79089834 79090136 -65192353 - AluSg SINE Alu -6 304 3 1058 225 63 27 chr12 79090136 79090752 -65191737 - L1MCa LINE L1 -3648 2778 2143 494 296 85 67 chr12 79090767 79091155 -65191334 + L2 LINE L2 2125 2519 -795 334 326 76 14 chr12 79091145 79091289 -65191200 + L2 LINE L2 2921 3073 -240 * 28 86 0 0 chr12 79091540 79091610 -65190879 + AT_rich Low_complexity Low_complexity 1 70 0 252 277 0 60 chr12 79091639 79091722 -65190767 - L2 LINE L2 -32 3281 3204 594 225 53 0 chr12 79091723 79091874 -65190615 - L2 LINE L2 -1251 2063 1905 24 0 0 29 chr12 79091989 79092004 -65190485 + AT_rich Low_complexity Low_complexity 1 15 -19 1770 148 3 43 chr12 79092004 79092307 -65190182 + AluSx SINE Alu 1 291 -21 24 0 0 29 chr12 79092307 79092326 -65190163 + AT_rich Low_complexity Low_complexity 15 34 0 233 268 72 10 chr12 79092326 79092423 -65190066 + MIR SINE MIR 151 253 -9 23 54 0 0 chr12 79092459 79092496 -65189993 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr12 79094185 79094214 -65188275 + AT_rich Low_complexity Low_complexity 1 29 0 2531 224 13 46 chr12 79094717 79095391 -65187098 - MER82 DNA MER2_type 0 653 2 253 326 8 70 chr12 79097926 79098055 -65184434 + L2 LINE L2 3193 3313 0 309 235 12 12 chr12 79098078 79098159 -65184330 + MLT1F1 LTR MaLR 45 125 -442 1066 218 0 45 chr12 79098166 79098432 -65184057 + L1MC3 LINE L1 7199 7452 -333 * 4805 201 19 30 chr12 79098425 79099269 -65183220 - L1 LINE L1 -746 5400 4548 2386 95 35 17 chr12 79099269 79099616 -65182873 - THE1A LTR MaLR -2 353 1 10673 110 25 1 chr12 79099616 79101159 -65181330 - THE1A-int LTR MaLR 0 1580 1 2178 97 62 20 chr12 79101159 79101500 -65180989 - THE1A LTR MaLR 0 355 1 4805 201 19 30 chr12 79101500 79101841 -65180648 - L1 LINE L1 -1595 4551 4226 1593 94 66 0 chr12 79101841 79102085 -65180404 + L1PA13 LINE L1 5902 6161 -2 25 0 0 0 chr12 79102091 79102116 -65180373 + AT_rich Low_complexity Low_complexity 1 25 0 2362 145 44 65 chr12 79102129 79102798 -65179691 + L1MB1 LINE L1 5366 5950 -230 24 32 0 0 chr12 79102953 79102984 -65179505 + AT_rich Low_complexity Low_complexity 1 31 0 322 202 61 50 chr12 79103236 79103335 -65179154 + L1MB1 LINE L1 6067 6166 -23 1767 146 48 58 chr12 79104121 79104518 -65177971 + L1MA10 LINE L1 5935 6327 -7 1141 184 65 18 chr12 79104550 79104828 -65177661 + L1MC3 LINE L1 7495 7785 0 195 42 0 0 chr12 79105401 79105425 -65177064 + (T)n Simple_repeat Simple_repeat 1 24 0 762 98 35 56 chr12 79105473 79105616 -65176873 - L1MC3 LINE L1 -7 7778 7639 322 156 78 0 chr12 79105659 79105723 -65176766 - L1MC3 LINE L1 -525 7260 7192 240 266 43 11 chr12 79105723 79105817 -65176672 - MLT1F1 LTR MaLR -436 131 35 1249 158 27 57 chr12 79105818 79106115 -65176374 - L1MC3 LINE L1 -689 7096 6809 22 35 0 0 chr12 79106177 79106206 -65176283 + AT_rich Low_complexity Low_complexity 1 29 0 357 253 12 62 chr12 79107523 79107685 -65174804 + MLT1K LTR MaLR 372 525 -63 219 297 109 30 chr12 79107716 79107817 -65174672 + MIR SINE MIR 7 115 -147 23 68 0 0 chr12 79108261 79108305 -65174184 + AT_rich Low_complexity Low_complexity 1 44 0 528 288 38 38 chr12 79108664 79108931 -65173558 - L1MC4a LINE L1 -1874 5934 5668 21 36 0 0 chr12 79109111 79109139 -65173350 + AT_rich Low_complexity Low_complexity 1 28 0 186 335 148 23 chr12 79109139 79109315 -65173174 - MIR SINE MIR 0 262 65 233 240 130 30 chr12 79109364 79109464 -65173025 - MLT1J2 LTR MaLR -2 448 339 1166 111 5 0 chr12 79109573 79109793 -65172696 + (TTTC)n Simple_repeat Simple_repeat 1 221 0 223 256 205 8 chr12 79110613 79110678 -65171811 - MIR SINE MIR -1 261 210 6687 159 30 2 chr12 79110678 79111876 -65170613 - Tigger3b DNA MER2_type 0 1231 1 223 256 205 8 chr12 79111876 79111927 -65170562 - MIR SINE MIR -52 210 122 1911 113 32 35 chr12 79113278 79113589 -65168900 + AluSx SINE Alu 1 310 -2 25 65 0 0 chr12 79114706 79114752 -65167737 + AT_rich Low_complexity Low_complexity 1 46 0 287 419 69 24 chr12 79115757 79116091 -65166398 - L2 LINE L2 -9 3263 2915 324 0 0 0 chr12 79116714 79116750 -65165739 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 327 25 0 0 chr12 79116749 79116789 -65165700 + (GA)n Simple_repeat Simple_repeat 1 40 0 1833 143 35 35 chr12 79116789 79117161 -65165328 + THE1C LTR MaLR 4 375 0 997 165 12 0 chr12 79117884 79118048 -65164441 + Tigger1 DNA MER2_type 1 166 -2252 * 5057 152 32 19 chr12 79118045 79118760 -65163729 + Tigger1 DNA MER2_type 1511 2242 -176 1807 152 20 20 chr12 79118760 79119056 -65163433 + AluSx SINE Alu 1 296 -16 5057 152 32 19 chr12 79119056 79119235 -65163254 + Tigger1 DNA MER2_type 2242 2417 -1 742 21 21 0 chr12 79119258 79119354 -65163135 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 8476 99 3 0 chr12 79119464 79120697 -65161792 + L1P LINE L1 2347 3583 -2563 353 220 0 0 chr12 79120797 79120856 -65161633 - AluJ/FLAM SINE Alu -235 67 9 1827 236 102 57 chr12 79120891 79120981 -65161508 - MER77 LTR ERV1 0 605 521 5971 39 15 1 chr12 79120981 79121717 -65160772 + L1PA4 LINE L1 5407 6152 -3 1827 236 102 57 chr12 79121717 79122202 -65160287 - MER77 LTR ERV1 -84 521 4 366 241 11 0 chr12 79122202 79122289 -65160200 - L1MC4 LINE L1 -370 7672 7585 633 276 164 41 chr12 79122411 79122849 -65159640 + MLT1H1 LTR MaLR 64 555 0 550 111 0 0 chr12 79122970 79123051 -65159438 + AluY SINE Alu 1 81 -229 10739 155 39 57 chr12 79123152 79125393 -65157096 - L1P LINE L1 -3358 2788 589 1174 88 69 0 chr12 79125518 79125678 -65156811 + AluY SINE Alu 126 296 -15 32 0 0 0 chr12 79126144 79126176 -65156313 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr12 79126474 79126497 -65155992 + AT_rich Low_complexity Low_complexity 1 23 0 2187 105 7 0 chr12 79126772 79127067 -65155422 + AluSx SINE Alu 1 297 -15 468 51 0 0 chr12 79127073 79127132 -65155357 + (TA)n Simple_repeat Simple_repeat 1 59 0 286 315 18 24 chr12 79127145 79127310 -65155179 + L1MEd LINE L1 963 1126 -4993 679 196 183 5 chr12 79127486 79127703 -65154786 - MER39 LTR ERV1 -302 405 1 242 203 0 16 chr12 79128177 79128241 -65154248 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 1824 114 84 39 chr12 79128375 79128734 -65153755 + THE1C LTR MaLR 1 375 0 22 56 0 0 chr12 79128854 79128890 -65153599 + AT_rich Low_complexity Low_complexity 1 36 0 799 264 0 6 chr12 79129118 79129296 -65153193 - MER5B DNA MER1_type 0 178 2 804 244 124 86 chr12 79129685 79130185 -65152304 - MLT1H1 LTR MaLR 0 555 37 2054 108 0 7 chr12 79131460 79131771 -65150718 - AluSq SINE Alu 0 309 1 381 326 91 29 chr12 79131771 79132111 -65150378 - L1M4 LINE L1 -1089 5057 4697 531 310 97 71 chr12 79132123 79132740 -65149749 - L1M4 LINE L1 -2503 3643 3011 21 36 0 0 chr12 79132799 79132827 -65149662 + AT_rich Low_complexity Low_complexity 1 28 0 216 135 0 0 chr12 79133019 79133056 -65149433 + (CA)n Simple_repeat Simple_repeat 2 38 0 314 313 9 36 chr12 79133093 79133253 -65149236 + MIR SINE MIR 36 189 -63 268 239 11 45 chr12 79133990 79134078 -65148411 - MIR SINE MIR -29 233 149 1219 123 90 0 chr12 79134355 79134566 -65147923 - MER30 DNA MER1_type 0 230 1 881 257 43 0 chr12 79135338 79135595 -65146894 - L1MC4 LINE L1 0 8042 7775 369 0 0 0 chr12 79135720 79135761 -65146728 + (TA)n Simple_repeat Simple_repeat 2 42 0 706 191 46 0 chr12 79135778 79135909 -65146580 + Tigger1 DNA MER2_type 2281 2417 -1 287 320 13 13 chr12 79136731 79136809 -65145680 - LTR67 LTR ERVL -369 188 111 335 236 110 31 chr12 79136915 79137042 -65145447 + MER117 DNA MER1_type 28 164 -33 31 26 0 0 chr12 79137677 79137715 -65144774 + AT_rich Low_complexity Low_complexity 1 38 0 2019 203 16 23 chr12 79138272 79138711 -65143778 + L1MB1 LINE L1 5669 6104 -85 2492 119 3 23 chr12 79138720 79139107 -65143382 + L1P3 LINE L1 8 386 -6075 707 247 62 35 chr12 79140063 79140290 -65142199 + MIR SINE MIR 9 241 -21 230 284 68 40 chr12 79140346 79140420 -65142069 + L2 LINE L2 3196 3271 -1 24 67 0 0 chr12 79140791 79140836 -65141653 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr12 79140907 79140930 -65141559 + AT_rich Low_complexity Low_complexity 1 23 0 2229 77 0 3 chr12 79141298 79141614 -65140875 + AluY SINE Alu 1 315 0 21 71 0 0 chr12 79141699 79141741 -65140748 + AT_rich Low_complexity Low_complexity 1 42 0 521 177 113 87 chr12 79141936 79142203 -65140286 - MER110A LTR ERV1 0 491 235 288 303 85 38 chr12 79143539 79143708 -65138781 - MER5A DNA MER1_type 0 189 3 1025 64 14 0 chr12 79145717 79145858 -65136631 + (TTTC)n Simple_repeat Simple_repeat 3 145 0 1666 156 0 22 chr12 79145858 79146134 -65136355 - AluJb SINE Alu -38 274 5 204 211 11 53 chr12 79146346 79146441 -65136048 + A-rich Low_complexity Low_complexity 2 92 0 622 235 83 122 chr12 79146536 79146996 -65135493 + MER110A LTR ERV1 1 442 -26 2006 218 60 32 chr12 79147929 79148713 -65133776 + L1MDb LINE L1 917 1675 -4865 1357 44 0 16 chr12 79148776 79148959 -65133530 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1979 102 28 7 chr12 79148976 79149259 -65133230 - AluSc SINE Alu -17 292 4 841 177 23 40 chr12 79149281 79149456 -65133033 - FAM SINE Alu 0 175 4 1254 254 84 25 chr12 79149460 79149847 -65132642 + L1MDb LINE L1 1923 2286 -4254 1908 185 26 16 chr12 79149847 79150230 -65132259 + MLT1B LTR MaLR 4 390 0 1254 254 84 25 chr12 79150230 79150262 -65132227 + L1MDb LINE L1 2286 2315 -4225 180 0 0 0 chr12 79150262 79150282 -65132207 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1254 254 84 25 chr12 79150282 79150897 -65131592 + L1MDb LINE L1 2315 3025 -3515 425 158 13 0 chr12 79150899 79150975 -65131514 + MER31A LTR ERV1 400 476 -9 282 56 0 0 chr12 79151464 79151500 -65130989 + (TA)n Simple_repeat Simple_repeat 2 37 0 24 77 0 0 chr12 79152036 79152088 -65130401 + AT_rich Low_complexity Low_complexity 1 52 0 260 253 44 22 chr12 79152797 79152888 -65129601 + MER90 LTR ERV1 257 349 -265 309 306 96 6 chr12 79153202 79153359 -65129130 - MIR SINE MIR -30 232 62 260 306 59 0 chr12 79153680 79153765 -65128724 - L2 LINE L2 0 3313 3224 510 304 84 46 chr12 79155350 79155695 -65126794 + L3 LINE CR1 1024 1381 -196 728 189 8 0 chr12 79156394 79156526 -65125963 + FLAM_A SINE Alu 1 133 0 23 97 0 0 chr12 79156993 79157065 -65125424 + AT_rich Low_complexity Low_complexity 1 72 0 1458 33 6 0 chr12 79157674 79157854 -65124635 - L1PA3 LINE L1 -241 5914 5734 21 0 0 0 chr12 79157858 79157879 -65124610 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr12 79158139 79158165 -65124324 + AT_rich Low_complexity Low_complexity 1 26 0 1969 162 7 0 chr12 79158479 79158788 -65123701 + AluSx SINE Alu 1 311 -1 33 0 0 0 chr12 79159921 79159954 -65122535 + AT_rich Low_complexity Low_complexity 1 33 0 4697 187 28 14 chr12 79160059 79161190 -65121299 - L1MA8 LINE L1 -12 6279 5129 490 302 139 36 chr12 79162133 79162385 -65120104 - L2 LINE L2 -15 3298 3021 32 0 0 0 chr12 79162443 79162475 -65120014 + AT_rich Low_complexity Low_complexity 1 32 0 249 111 22 0 chr12 79162760 79162805 -65119684 + MADE1 DNA Mariner 1 46 -34 323 320 16 24 chr12 79162977 79163102 -65119387 - L2 LINE L2 0 3313 3190 804 319 87 41 chr12 79165513 79166097 -65116392 + L2 LINE L2 2247 2857 -457 24 67 0 0 chr12 79166217 79166262 -65116227 + AT_rich Low_complexity Low_complexity 1 45 0 193 360 13 0 chr12 79166452 79166527 -65115962 + L2 LINE L2 2966 3041 -231 1612 103 8 16 chr12 79166648 79166900 -65115589 - L1PB2 LINE L1 0 6151 5902 216 214 0 54 chr12 79167000 79167056 -65115433 + L2 LINE L2 3261 3313 0 29 98 0 0 chr12 79167181 79167273 -65115216 + AT_rich Low_complexity Low_complexity 1 92 0 268 283 108 48 chr12 79168602 79168768 -65113721 + LTR33A LTR ERVL 330 505 -18 407 286 8 8 chr12 79168805 79168924 -65113565 - MIR SINE MIR -58 204 86 21 0 0 0 chr12 79169210 79169231 -65113258 + AT_rich Low_complexity Low_complexity 1 21 0 1686 151 39 24 chr12 79169237 79169569 -65112920 - L1PB3 LINE L1 -10 6144 5808 4675 255 47 17 chr12 79170401 79171967 -65110522 - L1MA8 LINE L1 -1315 4831 3219 2353 183 0 19 chr12 79171973 79172399 -65110090 - MER47B DNA MER2_type 0 418 1 376 295 86 0 chr12 79172431 79172570 -65109919 - Charlie2 DNA MER1_type -2338 444 294 1247 240 53 42 chr12 79172706 79173335 -65109154 - L1ME LINE L1 -449 5713 5089 31 68 0 0 chr12 79173405 79173464 -65109025 + AT_rich Low_complexity Low_complexity 1 59 0 898 219 31 0 chr12 79173472 79173668 -65108821 + MER3 DNA MER1_type 2 203 -6 436 299 29 7 chr12 79173744 79173881 -65108608 - MIR SINE MIR -113 149 10 2180 64 0 0 chr12 79173883 79174149 -65108340 + AluY SINE Alu 1 266 -45 2063 95 3 11 chr12 79174149 79174432 -65108057 + AluSx SINE Alu 27 307 -5 1551 75 19 0 chr12 79175830 79176042 -65106447 - L1PA7 LINE L1 -2 6152 5937 2634 139 25 0 chr12 79176042 79176477 -65106012 - L1PA15 LINE L1 -4 6161 5712 897 298 72 30 chr12 79178641 79178982 -65103507 + L2 LINE L2 2232 2592 -722 2159 116 0 3 chr12 79178982 79179283 -65103206 - AluSc SINE Alu -9 300 1 897 298 72 30 chr12 79179283 79179314 -65103175 + L2 LINE L2 2592 2620 -694 4933 44 12 2 chr12 79179316 79179952 -65102537 - L1M LINE L1 -816 5330 4701 7042 30 4 0 chr12 79179952 79180788 -65101701 + L1PA4 LINE L1 5315 6154 -1 4933 44 12 2 chr12 79180788 79180799 -65101690 - L1M LINE L1 -1445 4701 4692 545 262 70 29 chr12 79180800 79180972 -65101517 + L2 LINE L2 2636 2814 -500 1343 169 14 78 chr12 79180998 79181342 -65101147 + L1MA7 LINE L1 5945 6266 -25 338 237 52 0 chr12 79181372 79181507 -65100982 + MER96B DNA MER1_type? 52 193 -224 227 218 39 13 chr12 79181652 79181730 -65100759 + (TA)n Simple_repeat Simple_repeat 1 80 0 13583 148 30 32 chr12 79181746 79184147 -65098342 + Tigger1 DNA MER2_type 24 2418 0 380 264 0 8 chr12 79184310 79184431 -65098058 + (TA)n Simple_repeat Simple_repeat 2 121 0 6249 155 36 18 chr12 79184511 79185720 -65096769 + Tigger3b DNA MER2_type 1 1230 -1 327 49 0 0 chr12 79186042 79186083 -65096406 + (TG)n Simple_repeat Simple_repeat 2 42 0 3990 193 44 1 chr12 79186197 79186973 -65095516 - L1MB5 LINE L1 -9 6165 5357 22 0 0 0 chr12 79186987 79187009 -65095480 + AT_rich Low_complexity Low_complexity 1 22 0 5259 108 18 4 chr12 79187045 79187838 -65094651 - L1PB1 LINE L1 -5 6862 6059 1134 126 11 0 chr12 79187840 79188015 -65094474 + AluY SINE Alu 135 311 0 12062 222 7 12 chr12 79188023 79188180 -65094309 - L1PB1 LINE L1 -796 6066 5910 234 0 0 0 chr12 79188180 79188206 -65094283 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 12062 222 7 12 chr12 79188206 79191354 -65091135 - L1PB1 LINE L1 -952 5910 2778 330 290 170 41 chr12 79191891 79192149 -65090340 + MLT1J2 LTR MaLR 27 323 -123 2076 175 26 42 chr12 79192253 79192705 -65089784 + MER65A LTR ERV1 1 445 0 21 0 0 0 chr12 79196194 79196215 -65086274 + AT_rich Low_complexity Low_complexity 1 21 0 200 254 56 42 chr12 79196234 79196305 -65086184 - L2 LINE L2 -33 3280 3209 375 78 0 0 chr12 79196343 79196394 -65086095 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 5278 178 17 50 chr12 79197339 79199042 -65083447 + L1MA9 LINE L1 4641 6312 0 393 283 38 27 chr12 79199570 79199754 -65082735 + L1M4 LINE L1 3370 3555 -2591 309 277 0 12 chr12 79200557 79200640 -65081849 - Charlie8 DNA MER1_type -2197 220 139 256 253 72 0 chr12 79200746 79200829 -65081660 - HAL1b LINE L1 -882 466 378 32 0 0 0 chr12 79202218 79202250 -65080239 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr12 79202550 79202592 -65079897 + AT_rich Low_complexity Low_complexity 1 42 0 291 114 0 0 chr12 79202880 79202924 -65079565 + (TA)n Simple_repeat Simple_repeat 1 44 0 255 79 0 0 chr12 79202924 79202962 -65079527 + (CA)n Simple_repeat Simple_repeat 1 38 0 232 174 0 0 chr12 79202963 79203009 -65079480 - LTR66 LTR ERVL -171 439 394 297 0 0 0 chr12 79203009 79203042 -65079447 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 342 0 0 0 chr12 79203041 79203079 -65079410 + (TA)n Simple_repeat Simple_repeat 2 39 0 307 267 0 10 chr12 79203079 79203094 -65079395 - L1MA4A LINE L1 -15 6288 6274 4285 175 32 8 chr12 79203094 79203916 -65078573 - L1PB4 LINE L1 -12 6144 5304 23 33 0 0 chr12 79203924 79203954 -65078535 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr12 79206535 79206573 -65075916 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 79206734 79206755 -65075734 + AT_rich Low_complexity Low_complexity 1 21 0 1771 143 15 0 chr12 79206837 79207109 -65075380 + AluSx SINE Alu 35 310 -2 686 206 0 6 chr12 79207114 79207274 -65075215 + GA-rich Low_complexity Low_complexity 4 162 0 1578 183 3 0 chr12 79207288 79207611 -65074878 + AluJb SINE Alu 1 324 0 316 223 68 58 chr12 79208444 79208547 -65073942 + MIR SINE MIR 159 262 0 24 67 0 0 chr12 79209526 79209571 -65072918 + AT_rich Low_complexity Low_complexity 1 45 0 504 314 37 21 chr12 79210031 79210219 -65072270 - MIR SINE MIR -48 214 24 1706 221 65 68 chr12 79211365 79211780 -65070709 - MLT1D LTR MaLR -16 489 74 1870 227 54 49 chr12 79211780 79212331 -65070158 + MLT2B3 LTR ERVL 1 554 0 1706 221 65 68 chr12 79212331 79212404 -65070085 - MLT1D LTR MaLR -431 74 2 46 62 0 0 chr12 79214052 79214133 -65068356 + AT_rich Low_complexity Low_complexity 1 81 0 21 36 0 0 chr12 79214141 79214169 -65068320 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr12 79214272 79214302 -65068187 + AT_rich Low_complexity Low_complexity 1 30 0 393 103 17 0 chr12 79214307 79214365 -65068124 + AluSg/x SINE Alu 66 124 -176 183 273 0 0 chr12 79214600 79214644 -65067845 + MIR SINE MIR 218 261 -1 2817 21 0 3 chr12 79214686 79215016 -65067473 - L1PA3 LINE L1 0 6155 5827 233 292 62 81 chr12 79215362 79215523 -65066966 + MLT1J LTR MaLR 218 375 -136 22 0 0 0 chr12 79215529 79215551 -65066938 + AT_rich Low_complexity Low_complexity 1 22 0 806 288 0 5 chr12 79215881 79216072 -65066417 + MLT1H1 LTR MaLR 51 240 -315 994 236 63 36 chr12 79216609 79216943 -65065546 - MER2 DNA MER2_type 0 344 2 22 88 0 0 chr12 79217038 79217095 -65065394 + AT_rich Low_complexity Low_complexity 1 57 0 1748 136 77 0 chr12 79217812 79218084 -65064405 + AluSq SINE Alu 1 293 -20 1427 195 20 17 chr12 79218639 79218970 -65063519 + AluJo SINE Alu 6 312 0 21 0 0 0 chr12 79219076 79219097 -65063392 + AT_rich Low_complexity Low_complexity 1 21 0 450 333 64 17 chr12 79219462 79219930 -65062559 + L1M4 LINE L1 3348 3837 -2309 9865 197 15 18 chr12 79219936 79220388 -65062101 - L1P LINE L1 -1933 4213 3761 1943 142 0 13 chr12 79220388 79220698 -65061791 - AluSx SINE Alu -6 306 1 9865 197 15 18 chr12 79220698 79222420 -65060069 - L1P LINE L1 -2385 3761 2047 5360 207 2 12 chr12 79222428 79224395 -65058094 + L1PA14 LINE L1 4190 6160 -1 28 86 0 0 chr12 79224398 79224468 -65058021 + AT_rich Low_complexity Low_complexity 1 70 0 362 254 12 65 chr12 79224509 79224635 -65057854 - L1ME LINE L1 -469 5693 5571 940 87 7 7 chr12 79224756 79224767 -65057722 + (TTTC)n Simple_repeat Simple_repeat 1 161 0 940 87 7 7 chr12 79224767 79224917 -65057572 + (TTTC)n Simple_repeat Simple_repeat 4 153 0 536 267 7 147 chr12 79225470 79225762 -65056727 + MIR SINE MIR 1 251 -11 10984 113 3 9 chr12 79226611 79227007 -65055482 + THE1B-int LTR MaLR 31 428 -1152 2016 159 0 0 chr12 79227007 79227316 -65055173 - AluSx SINE Alu -3 309 1 10984 113 3 9 chr12 79227316 79228479 -65054010 + THE1B-int LTR MaLR 428 1580 0 1971 151 42 22 chr12 79228479 79228836 -65053653 + THE1B LTR MaLR 1 364 0 1103 249 84 3 chr12 79228846 79229155 -65053334 - MLT1C LTR MaLR -128 339 6 1814 212 25 11 chr12 79229159 79229593 -65052896 + L1MB7 LINE L1 5736 6175 -9 23 0 0 0 chr12 79229863 79229886 -65052603 + AT_rich Low_complexity Low_complexity 1 23 0 234 308 31 31 chr12 79229922 79230052 -65052437 - L1ME LINE L1 -1114 5032 4903 256 196 103 21 chr12 79230286 79230410 -65052079 + (TGAA)n Simple_repeat Simple_repeat 1 134 0 1266 39 0 0 chr12 79230908 79231063 -65051426 + L1PA4 LINE L1 5996 6150 -5 2374 89 0 0 chr12 79231143 79231447 -65051042 - AluY SINE Alu -4 307 4 14585 102 13 1 chr12 79232043 79234971 -65047518 - L1PA7 LINE L1 -1 6153 3201 10675 102 7 19 chr12 79234972 79236606 -65045883 + L1PA7 LINE L1 1580 3194 -2952 653 290 132 48 chr12 79237672 79237756 -65044733 - LTR33 LTR ERVL 0 521 445 885 207 138 56 chr12 79237756 79238148 -65044341 + MSTC LTR MaLR 1 424 -4 653 290 132 48 chr12 79238148 79238542 -65043947 - LTR33 LTR ERVL -76 445 3 1358 291 46 44 chr12 79239535 79240212 -65042277 + L2 LINE L2 2386 3059 -254 433 263 81 25 chr12 79240234 79240394 -65042095 - MLT1F1 LTR MaLR -34 533 365 272 283 61 0 chr12 79240428 79240527 -65041962 - MLT1F1 LTR MaLR -240 290 186 399 240 82 77 chr12 79241285 79241481 -65041008 - MLT1J1 LTR MaLR -13 433 237 316 265 37 52 chr12 79242116 79242252 -65040237 + ERVL LTR ERVL 4083 4216 -1548 592 325 148 35 chr12 79242288 79242889 -65039600 + ERVL LTR ERVL 4292 4960 -694 2227 121 6 24 chr12 79243505 79243843 -65038646 - THE1B LTR MaLR 0 364 33 240 246 73 55 chr12 79244161 79244271 -65038218 + LTR67 LTR ERVL 380 491 -66 908 315 139 9 chr12 79244466 79244921 -65037568 - L2 LINE L2 -282 3031 2523 5118 189 18 9 chr12 79245051 79246762 -65035727 + L1MA4 LINE L1 4576 6299 -1 414 319 50 54 chr12 79247068 79247347 -65035142 + L2 LINE L2 954 1231 -2083 250 227 27 27 chr12 79247557 79247632 -65034857 - L1ME LINE L1 -455 5666 5592 261 98 0 0 chr12 79248295 79248336 -65034153 + (TA)n Simple_repeat Simple_repeat 1 41 0 205 244 0 0 chr12 79249874 79249915 -65032574 + L2 LINE L2 3187 3227 -86 1966 130 10 0 chr12 79249934 79250226 -65032263 + AluSg SINE Alu 1 295 -15 227 433 18 6 chr12 79250412 79250583 -65031906 - L2 LINE L2 -163 3109 2937 5896 129 8 5 chr12 79251204 79252543 -65029946 + L1PA13 LINE L1 4757 6101 -62 937 154 0 0 chr12 79253166 79253322 -65029167 + L1PA14 LINE L1 6004 6159 -2 234 315 47 24 chr12 79253579 79253706 -65028783 + MER94 DNA DNA 1 130 -4 645 108 0 54 chr12 79253927 79254038 -65028451 + FLAM_C SINE Alu 1 105 -38 369 43 0 0 chr12 79254069 79254116 -65028373 + (CA)n Simple_repeat Simple_repeat 2 48 0 2132 128 0 0 chr12 79254598 79254903 -65027586 - AluSg SINE Alu -5 305 1 182 231 15 0 chr12 79255547 79255612 -65026877 + (TA)n Simple_repeat Simple_repeat 1 66 0 24 32 0 0 chr12 79255982 79256013 -65026476 + AT_rich Low_complexity Low_complexity 1 31 0 2297 58 0 14 chr12 79256945 79257261 -65025228 + AluY SINE Alu 1 312 0 456 344 97 0 chr12 79257801 79257987 -65024502 + MIR SINE MIR 33 236 -26 204 163 0 0 chr12 79258009 79258052 -65024437 + (CTA)n Simple_repeat Simple_repeat 1 43 0 2887 104 182 143 chr12 79259117 79260117 -65022372 + LTR12 LTR ERV1 57 714 0 186 43 0 0 chr12 79260177 79260200 -65022289 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 189 0 0 0 chr12 79260199 79260220 -65022269 + (TG)n Simple_repeat Simple_repeat 2 22 0 529 191 48 0 chr12 79260549 79260654 -65021835 + FLAM_A SINE Alu 22 131 -11 462 320 70 22 chr12 79260732 79261132 -65021357 - L1MC/D LINE L1 -2042 5766 5348 5086 240 129 31 chr12 79261288 79262789 -65019700 + MER52A LTR ERV1 1 1753 -2 2300 263 49 27 chr12 79263472 79264247 -65018242 + Zaphod DNA AcHobo 10 801 -3230 258 308 22 0 chr12 79264223 79264314 -65018175 + MER115 DNA AcHobo 601 693 0 * 1431 136 27 0 chr12 79264323 79264543 -65017946 + MER30 DNA MER1_type 4 229 -1 441 54 0 0 chr12 79264860 79264916 -65017573 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 2372 161 18 50 chr12 79265145 79265649 -65016840 + LTR22B LTR ERVK 5 492 0 578 293 140 14 chr12 79265879 79266101 -65016388 + MIR SINE MIR 12 261 -1 24 32 0 0 chr12 79266177 79266208 -65016281 + AT_rich Low_complexity Low_complexity 1 31 0 1422 239 39 14 chr12 79266238 79266594 -65015895 + MLT1A1 LTR MaLR 1 365 0 385 272 48 22 chr12 79268238 79268406 -65014083 - L1ME1 LINE L1 -113 6053 5888 1336 225 57 78 chr12 79268421 79269122 -65013367 - L1ME1 LINE L1 -1289 4857 4172 306 224 0 0 chr12 79269136 79269203 -65013286 - L1MC/D LINE L1 -733 5669 5603 301 245 29 10 chr12 79269210 79269312 -65013177 - L1MC/D LINE L1 -5318 1078 975 372 291 52 37 chr12 79269769 79269903 -65012586 + MIR SINE MIR 13 148 -114 625 334 68 38 chr12 79270593 79271207 -65011282 - L1MC/D LINE L1 -5475 921 289 1582 158 96 4 chr12 79273247 79273519 -65008970 + AluJb SINE Alu 5 301 -11 231 327 124 9 chr12 79273908 79274021 -65008468 + L2 LINE L2 3171 3296 -17 246 87 0 0 chr12 79274317 79274363 -65008126 - LTR66 LTR ERVL -171 439 394 23 78 0 0 chr12 79274392 79274443 -65008046 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr12 79274570 79274595 -65007894 + AT_rich Low_complexity Low_complexity 1 25 0 439 229 0 15 chr12 79275504 79275743 -65006746 + AluJb SINE Alu 2 334 0 352 42 70 14 chr12 79275894 79275965 -65006524 + (TCTA)n Simple_repeat Simple_repeat 1 75 0 311 250 101 68 chr12 79276400 79276548 -65005941 + MLT1G1 LTR MaLR 249 401 -194 347 323 92 43 chr12 79276550 79276832 -65005657 + HAL1 LINE L1 1269 1564 -943 448 297 80 17 chr12 79277004 79277179 -65005310 + LTR16A LTR ERVL 265 450 0 28 61 0 0 chr12 79277207 79277256 -65005233 + AT_rich Low_complexity Low_complexity 1 49 0 1404 202 77 17 chr12 79277606 79277893 -65004596 + MSTA LTR MaLR 1 304 -124 183 139 0 0 chr12 79278258 79278294 -65004195 + (TAA)n Simple_repeat Simple_repeat 2 37 0 242 254 263 0 chr12 79278349 79278463 -65004026 + MIR SINE MIR 116 259 -3 291 408 105 0 chr12 79278509 79278776 -65003713 + L2 LINE L2 2443 2737 -577 419 197 258 15 chr12 79278855 79278987 -65003502 + MER5A DNA MER1_type 26 189 0 703 328 49 4 chr12 79279977 79280242 -65002247 - L2 LINE L2 -654 2660 2384 515 331 18 0 chr12 79280594 79280760 -65001729 - L2 LINE L2 -2928 386 218 335 316 115 64 chr12 79280799 79281033 -65001456 - L2 LINE L2 -3033 281 36 23 54 0 0 chr12 79281116 79281153 -65001336 + AT_rich Low_complexity Low_complexity 1 37 0 275 250 0 12 chr12 79282256 79282336 -65000153 + (TA)n Simple_repeat Simple_repeat 2 80 0 271 267 0 0 chr12 79282336 79282426 -65000063 - L1MC4 LINE L1 -1339 6703 6614 180 77 0 0 chr12 79282476 79282502 -64999987 + (TA)n Simple_repeat Simple_repeat 2 27 0 721 311 68 5 chr12 79282896 79283231 -64999258 + LTR16A LTR ERVL 44 399 -51 251 362 68 31 chr12 79283631 79283924 -64998565 - L2 LINE L2 -559 2755 2452 35 0 0 0 chr12 79284504 79284539 -64997950 + AT_rich Low_complexity Low_complexity 1 35 0 213 39 0 0 chr12 79285151 79285177 -64997312 + (TG)n Simple_repeat Simple_repeat 2 27 0 28 71 0 0 chr12 79286511 79286567 -64995922 + AT_rich Low_complexity Low_complexity 1 56 0 842 279 115 27 chr12 79287656 79288136 -64994353 - HAL1 LINE L1 -444 2063 1542 2223 110 0 10 chr12 79288136 79288446 -64994043 - AluSx SINE Alu -5 307 1 775 146 85 0 chr12 79289227 79289357 -64993132 + AluJb SINE Alu 1 141 -171 195 42 0 0 chr12 79289374 79289398 -64993091 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6027 151 61 29 chr12 79289545 79290732 -64991757 + Tigger3b DNA MER2_type 2 1226 -5 29 47 0 0 chr12 79290983 79291026 -64991463 + AT_rich Low_complexity Low_complexity 1 43 0 1839 154 3 13 chr12 79291458 79291770 -64990719 - AluJb SINE Alu -3 309 1 2950 47 29 0 chr12 79292662 79293042 -64989447 - L1PA7 LINE L1 -1 6153 5763 544 249 173 30 chr12 79293144 79293341 -64989148 + MIR SINE MIR 10 234 -28 294 298 168 0 chr12 79293741 79293902 -64988587 + MIR SINE MIR 23 210 -52 22 0 0 0 chr12 79295403 79295425 -64987064 + AT_rich Low_complexity Low_complexity 1 22 0 573 301 101 36 chr12 79296991 79297406 -64985083 - MLT1J2 LTR MaLR -2 448 7 1901 176 14 8 chr12 79297656 79298008 -64984481 + THE1A LTR MaLR 2 355 0 10851 108 11 6 chr12 79298008 79299581 -64982908 + THE1A-int LTR MaLR 1 1580 0 2008 161 8 8 chr12 79299581 79299936 -64982553 + THE1A LTR MaLR 1 355 0 180 320 120 0 chr12 79300759 79300859 -64981630 + MIR SINE MIR 90 201 -61 24 0 0 0 chr12 79302504 79302528 -64979961 + AT_rich Low_complexity Low_complexity 1 24 0 1698 214 20 51 chr12 79302528 79303037 -64979452 - L1MA9 LINE L1 -38 6274 5782 353 224 18 35 chr12 79303057 79303227 -64979262 + (TTATA)n Simple_repeat Simple_repeat 5 171 0 3232 200 119 9 chr12 79303228 79304244 -64978245 - L1MA9 LINE L1 -512 5800 4571 2321 169 24 7 chr12 79304244 79304663 -64977826 + MSTB LTR MaLR 1 426 0 3232 200 119 9 chr12 79304663 79305020 -64977469 - L1MA9 LINE L1 -1741 4571 4255 1284 253 14 0 chr12 79305085 79305381 -64977108 - L1MA9 LINE L1 -2051 4095 3796 23 0 0 0 chr12 79305384 79305407 -64977082 + AT_rich Low_complexity Low_complexity 1 23 0 735 246 51 8 chr12 79305530 79305786 -64976703 - L1MCa LINE L1 -4069 2357 2091 198 0 0 0 chr12 79305786 79305808 -64976681 + (T)n Simple_repeat Simple_repeat 1 22 0 1957 114 0 3 chr12 79305851 79306159 -64976330 - L1HS LINE L1 0 6155 5849 280 275 135 22 chr12 79306320 79306498 -64975991 - L1MC/D LINE L1 -2283 5525 5328 969 249 44 28 chr12 79307225 79307822 -64974667 + L1ME LINE L1 4965 5571 -591 2148 113 0 0 chr12 79310117 79310400 -64972089 + AluSx SINE Alu 6 288 -24 369 62 0 0 chr12 79310400 79310448 -64972041 + (TA)n Simple_repeat Simple_repeat 2 49 0 5057 211 32 61 chr12 79310494 79311788 -64970701 + L1MA4A LINE L1 1847 3102 -4464 755 198 13 5 chr12 79311787 79311991 -64970498 + L1MA4A LINE L1 3506 3711 -3854 * 554 177 88 0 chr12 79311991 79312056 -64970433 + MLT2A2 LTR ERVL 331 389 -64 254 28 0 28 chr12 79312056 79312092 -64970397 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 554 177 88 0 chr12 79312092 79312139 -64970350 + MLT2A2 LTR ERVL 389 453 0 5472 167 31 11 chr12 79312139 79312884 -64969605 + L1MA4A LINE L1 6215 6944 -778 2669 98 3 11 chr12 79312884 79313261 -64969228 + THE1C LTR MaLR 2 375 0 5472 167 31 11 chr12 79313261 79313985 -64968504 + L1MA4A LINE L1 6944 7715 -7 515 320 56 76 chr12 79314246 79314655 -64967834 + L2 LINE L2 1290 1690 -1624 33 109 0 0 chr12 79315378 79315516 -64966973 + AT_rich Low_complexity Low_complexity 1 138 0 250 315 46 0 chr12 79315988 79316096 -64966393 + L1M2 LINE L1 4141 4253 -3312 1008 198 5 25 chr12 79316097 79316294 -64966195 + MER82 DNA MER2_type 1 193 -460 1272 128 52 98 chr12 79316438 79316744 -64965745 - L1MA8 LINE L1 -2 6289 5998 2009 127 3 0 chr12 79317124 79317416 -64965073 + AluSx SINE Alu 4 296 -16 233 264 44 55 chr12 79317424 79317515 -64964974 + L1P5 LINE L1 5472 5561 -590 391 317 14 58 chr12 79317649 79317857 -64964632 + L1ME3A LINE L1 5683 5881 -289 2582 115 0 3 chr12 79317944 79318309 -64964180 - THE1B LTR MaLR 0 364 1 472 254 76 38 chr12 79318954 79319139 -64963350 + HAL1 LINE L1 728 919 -1588 26 0 0 0 chr12 79319298 79319324 -64963165 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr12 79319378 79319410 -64963079 + AT_rich Low_complexity Low_complexity 1 32 0 1587 199 50 70 chr12 79319866 79320437 -64962052 + MER67C LTR ERV1 1 511 -3 276 277 43 11 chr12 79321267 79321361 -64961128 + MIR SINE MIR 54 150 -58 22 0 0 0 chr12 79321746 79321768 -64960721 + AT_rich Low_complexity Low_complexity 1 22 0 7516 94 4 21 chr12 79322666 79323756 -64958733 + MER11C LTR ERVK 1 1071 0 217 204 23 0 chr12 79324507 79324551 -64957938 - MIR3 SINE MIR 0 208 164 337 216 41 31 chr12 79324889 79324986 -64957503 + L2 LINE L2 3173 3270 -43 2626 200 12 4 chr12 79325609 79326110 -64956379 + LTR10B LTR ERV1 1 505 0 1198 155 98 0 chr12 79326110 79326375 -64956114 + MER33 DNA MER1_type 34 324 0 265 204 32 75 chr12 79328725 79328818 -64953671 - L1MB1 LINE L1 -3 6186 6098 11711 102 9 0 chr12 79328818 79331292 -64951197 - L1PA7 LINE L1 -6 6148 3660 1259 269 33 9 chr12 79331399 79331734 -64950755 + MER82 DNA MER2_type 310 652 -1 1248 287 79 49 chr12 79331746 79333030 -64949459 + L1ME3A LINE L1 2847 4168 -1978 730 169 23 0 chr12 79333034 79333164 -64949325 + AluSq/x SINE Alu 1 133 -179 263 266 112 70 chr12 79333643 79333884 -64948605 + L1ME3A LINE L1 5296 5546 -620 954 251 53 87 chr12 79333923 79334465 -64948024 + L1ME3A LINE L1 5641 6164 -6 549 267 48 38 chr12 79335282 79335492 -64946997 + MIR SINE MIR 49 260 -2 188 329 51 25 chr12 79335693 79335772 -64946717 - MER5A DNA MER1_type -5 184 104 309 89 0 0 chr12 79337691 79337736 -64944753 + (TC)n Simple_repeat Simple_repeat 1 45 0 272 261 15 0 chr12 79337827 79337892 -64944597 + MLT1J1 LTR MaLR 95 160 -286 434 305 78 13 chr12 79337955 79338109 -64944380 + MLT1J2 LTR MaLR 282 445 -5 27 87 0 0 chr12 79338790 79338859 -64943630 + AT_rich Low_complexity Low_complexity 1 69 0 22 56 0 0 chr12 79338958 79338994 -64943495 + AT_rich Low_complexity Low_complexity 1 36 0 204 40 0 0 chr12 79339624 79339649 -64942840 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 244 260 10 73 chr12 79339794 79339890 -64942599 - MIR SINE MIR -64 198 109 27 29 0 0 chr12 79339915 79339949 -64942540 + AT_rich Low_complexity Low_complexity 1 34 0 207 220 0 0 chr12 79340404 79340454 -64942035 + (TA)n Simple_repeat Simple_repeat 1 50 0 389 330 37 28 chr12 79340536 79340754 -64941735 - L3b LINE CR1 -238 1345 1126 262 315 87 27 chr12 79341599 79341748 -64940741 + MIR SINE MIR 92 249 -13 21 71 0 0 chr12 79341748 79341790 -64940699 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr12 79341839 79341867 -64940622 + AT_rich Low_complexity Low_complexity 1 28 0 1518 175 7 7 chr12 79341924 79342204 -64940285 - L1PB4 LINE L1 0 6156 5877 24 0 0 0 chr12 79343183 79343207 -64939282 + AT_rich Low_complexity Low_complexity 1 24 0 2253 63 0 0 chr12 79343512 79343783 -64938706 + AluY SINE Alu 4 274 -37 23 0 0 0 chr12 79343892 79343915 -64938574 + AT_rich Low_complexity Low_complexity 1 23 0 390 247 100 36 chr12 79344035 79344286 -64938203 - L1MCa LINE L1 -4061 2365 2099 243 0 0 0 chr12 79344289 79344316 -64938173 + (T)n Simple_repeat Simple_repeat 1 27 0 42956 31 22 2 chr12 79344361 79350394 -64932095 - L1HS LINE L1 0 6155 1 191 358 91 33 chr12 79350430 79350673 -64931816 + L2 LINE L2 1917 2173 -1141 1037 231 22 0 chr12 79350676 79350901 -64931588 + L1PA16 LINE L1 5921 6150 -16 355 385 30 15 chr12 79350907 79351107 -64931382 + MIR SINE MIR 18 220 -42 742 80 0 33 chr12 79351161 79351312 -64931177 + (TA)n Simple_repeat Simple_repeat 1 146 0 405 321 46 30 chr12 79351382 79351619 -64930870 + L2 LINE L2 2239 2479 -835 446 340 204 15 chr12 79351652 79352180 -64930309 - L2 LINE L2 0 3313 2688 1099 241 82 21 chr12 79352330 79352612 -64929877 - MLT1F1 LTR MaLR -268 299 1 509 361 40 9 chr12 79354314 79354541 -64927948 + MIR SINE MIR 17 250 -12 363 284 47 0 chr12 79355762 79355889 -64926600 - MER94 DNA DNA 0 134 2 2989 149 15 29 chr12 79355918 79356690 -64925799 + L1P5 LINE L1 5017 5774 -382 2459 125 46 96 chr12 79356669 79356797 -64925692 + L1PB4 LINE L1 5659 5792 -364 * 1825 177 3 3 chr12 79356797 79357108 -64925381 + AluJb SINE Alu 1 311 -1 2459 125 46 96 chr12 79357108 79357500 -64924989 + L1PB4 LINE L1 5792 6153 -3 21 0 0 0 chr12 79357500 79357521 -64924968 + AT_rich Low_complexity Low_complexity 1 21 0 833 216 50 29 chr12 79357603 79357911 -64924578 - MER4C LTR ERV1 0 695 282 500 165 8 210 chr12 79357911 79358178 -64924311 - LTR34 LTR ERV1 -240 459 136 386 215 37 19 chr12 79358257 79358364 -64924125 - MER4A LTR ERV1 -547 117 9 2296 86 3 25 chr12 79358593 79358736 -64923753 + AluSq SINE Alu 1 146 -167 225 0 0 0 chr12 79358736 79358761 -64923728 + (TA)n Simple_repeat Simple_repeat 2 26 0 2296 86 3 25 chr12 79358761 79358931 -64923558 + AluSq SINE Alu 146 307 -6 668 97 10 0 chr12 79359430 79359533 -64922956 - L1PA13 LINE L1 0 6163 6060 2540 118 19 13 chr12 79409614 79409987 -64872502 + THE1C LTR MaLR 1 375 0 10120 118 29 67 chr12 79409987 79411630 -64870859 + THE1C-int LTR MaLR 1 1580 0 2136 161 14 6 chr12 79411630 79411991 -64870498 + THE1C LTR MaLR 1 364 -11 1075 174 30 25 chr12 79411969 79412170 -64870319 + MER67C LTR ERV1 202 403 -307 * 330 186 41 21 chr12 79412336 79412433 -64870056 + L1MC4a LINE L1 7164 7262 -546 1573 211 119 6 chr12 79413033 79413360 -64869129 + MLT1A1 LTR MaLR 2 365 0 26 50 0 0 chr12 79413505 79413545 -64868944 + AT_rich Low_complexity Low_complexity 1 40 0 381 339 42 0 chr12 79414049 79414167 -64868322 + L2 LINE L2 3150 3272 0 7071 233 105 33 chr12 79415484 79417487 -64865002 + L1M3e LINE L1 2 2155 -4882 5320 24 0 0 chr12 79417493 79418066 -64864423 + L1PA3 LINE L1 5580 6152 -3 1256 270 77 38 chr12 79418079 79418902 -64863587 + L1M3e LINE L1 3880 4742 -2364 2995 148 88 5 chr12 79419183 79419749 -64862740 + L1MA8 LINE L1 5676 6288 -3 26 30 0 0 chr12 79420257 79420290 -64862199 + AT_rich Low_complexity Low_complexity 1 33 0 656 323 94 7 chr12 79420800 79421107 -64861382 - LTR16A LTR ERVL -10 440 107 1430 180 26 49 chr12 79421293 79421598 -64860891 - AluJb SINE Alu -14 298 1 2352 154 7 28 chr12 79421599 79422035 -64860454 - L1MB1 LINE L1 -29 6139 5713 2455 83 29 0 chr12 79422157 79422505 -64859984 + L1PA6 LINE L1 5775 6132 -22 2005 121 20 3 chr12 79422505 79422802 -64859687 + L1PA13 LINE L1 5857 6158 -5 4629 176 21 3 chr12 79422816 79423950 -64858539 + L1M2 LINE L1 4507 5659 -632 1712 182 26 9 chr12 79424101 79424448 -64858041 + L1M3e LINE L1 4774 5126 -1980 1319 113 22 69 chr12 79424451 79424682 -64857807 + AluSp SINE Alu 78 297 -16 1197 187 42 64 chr12 79424687 79425046 -64857443 + L1M3e LINE L1 5133 5483 -1623 2100 115 22 0 chr12 79425046 79425358 -64857131 + L1P4 LINE L1 5367 5685 -478 * 4162 59 13 2 chr12 79425347 79425869 -64856620 + L1PA6 LINE L1 5335 5862 -292 2016 138 59 3 chr12 79425970 79426290 -64856199 - MER1B DNA MER1_type 0 339 2 579 267 20 0 chr12 79426612 79426762 -64855727 + MIR SINE MIR 12 164 -98 3152 240 41 13 chr12 79426763 79427639 -64854850 + L1 LINE L1 4284 5184 -962 1547 180 6 75 chr12 79429833 79430166 -64852323 + AluJb SINE Alu 1 310 -2 1671 99 81 33 chr12 79430254 79430559 -64851930 + AluSq SINE Alu 1 318 0 471 169 0 45 chr12 79430559 79430648 -64851841 - FLAM_A SINE Alu -33 109 25 251 86 0 0 chr12 79430677 79430712 -64851777 - L1M LINE L1 -2454 5354 5320 287 155 0 35 chr12 79431080 79431138 -64851351 - L1P LINE L1 -1207 4939 4884 451 341 57 9 chr12 79431248 79431477 -64851012 + MIR SINE MIR 22 261 -1 437 221 93 43 chr12 79431694 79431834 -64850655 - MIR SINE MIR -9 253 107 301 221 15 0 chr12 79432192 79432260 -64850229 + L2 LINE L2 2712 2780 -534 1190 178 114 27 chr12 79433986 79434193 -64848296 + MER33 DNA MER1_type 1 243 -2342 2071 116 0 10 chr12 79434193 79434486 -64848003 - AluSx SINE Alu -16 296 7 1190 178 114 27 chr12 79434486 79434576 -64847913 + MER33 DNA MER1_type 243 324 0 1067 218 33 149 chr12 79435335 79435698 -64846791 - L1MD2 LINE L1 -68 6174 5854 241 369 27 0 chr12 79435727 79435876 -64846613 - L1MD2 LINE L1 -1907 5901 5749 264 91 0 0 chr12 79436273 79436317 -64846172 + (CA)n Simple_repeat Simple_repeat 1 44 0 5530 132 21 11 chr12 79439765 79440672 -64841817 - L1P LINE L1 -5164 982 67 387 283 50 19 chr12 79440672 79440831 -64841658 + CT-rich Low_complexity Low_complexity 4 167 0 207 0 0 0 chr12 79440856 79440879 -64841610 + (TTTC)n Simple_repeat Simple_repeat 4 26 0 284 147 13 0 chr12 79441932 79442007 -64840482 + T-rich Low_complexity Low_complexity 3 78 0 2419 186 25 8 chr12 79442703 79443175 -64839314 + L1MC3 LINE L1 7306 7785 0 1349 207 90 38 chr12 79443171 79443592 -64838897 + L1M4 LINE L1 4369 4811 -1335 * 2322 106 0 0 chr12 79443896 79444208 -64838281 + AluSx SINE Alu 1 312 0 351 0 0 0 chr12 79444210 79444249 -64838240 + (TA)n Simple_repeat Simple_repeat 2 40 0 191 382 59 34 chr12 79445458 79445696 -64836793 + L2 LINE L2 227 470 -2844 1979 172 8 3 chr12 79445803 79446158 -64836331 - L1PA15 LINE L1 0 6165 5809 276 91 0 0 chr12 79446478 79446522 -64835967 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 0 0 0 chr12 79446988 79447011 -64835478 + AT_rich Low_complexity Low_complexity 1 23 0 398 217 70 5 chr12 79447706 79447889 -64834600 + MER58 DNA MER1_type 9 2415 -5 204 97 0 0 chr12 79449407 79449438 -64833051 + (TG)n Simple_repeat Simple_repeat 2 32 0 180 324 15 29 chr12 79449787 79449855 -64832634 + L2 LINE L2 2996 3062 -210 1841 164 0 3 chr12 79449972 79450264 -64832225 - AluJb SINE Alu -21 291 1 288 125 107 18 chr12 79450389 79450445 -64832044 + MLT1E1 LTR MaLR 159 219 -435 1298 181 24 8 chr12 79450451 79450699 -64831790 + AluJb SINE Alu 7 258 -54 229 229 0 96 chr12 79450705 79450788 -64831701 + AluJ/FRAM SINE Alu 223 297 -5 615 270 81 36 chr12 79450792 79451125 -64831364 + MLT1E3 LTR MaLR 148 495 -129 2995 160 35 14 chr12 79451865 79452484 -64830005 - L1 LINE L1 -2460 3686 3055 624 188 87 7 chr12 79452618 79452767 -64829722 + MLT1A1 LTR MaLR 1 161 -204 293 339 55 126 chr12 79452776 79453030 -64829459 + L2 LINE L2 2994 3229 -43 195 100 0 0 chr12 79453051 79453081 -64829408 + (ATG)n Simple_repeat Simple_repeat 3 32 0 457 351 22 48 chr12 79453115 79453383 -64829106 - MIR SINE MIR -1 261 1 6702 51 16 0 chr12 79453485 79454319 -64828170 - L1PA6 LINE L1 -1 6153 5280 221 0 35 0 chr12 79454319 79454348 -64828141 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6702 51 16 0 chr12 79454348 79455112 -64827377 - L1PA6 LINE L1 -874 5280 4530 216 0 0 0 chr12 79455640 79455664 -64826825 + (A)n Simple_repeat Simple_repeat 1 24 0 527 328 35 13 chr12 79456180 79456412 -64826077 - MLT1H1-int LTR MaLR -826 545 309 399 293 155 43 chr12 79456567 79456706 -64825783 - MLT1H1 LTR MaLR -13 542 420 2185 131 38 14 chr12 79456706 79457072 -64825417 + THE1C LTR MaLR 1 375 0 399 293 155 43 chr12 79457072 79457280 -64825209 - MLT1H1 LTR MaLR -135 420 156 257 328 9 43 chr12 79457352 79457468 -64825021 + L2 LINE L2 2919 3030 -283 1950 129 4 0 chr12 79457899 79458233 -64824256 - AluSx SINE Alu 0 335 1 457 318 20 40 chr12 79459955 79460153 -64822336 - MIR3 SINE MIR -7 201 8 254 368 75 9 chr12 79462282 79462388 -64820101 - L2 LINE L2 -3 3269 3157 22 0 0 0 chr12 79462886 79462908 -64819581 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr12 79464129 79464159 -64818330 + (T)n Simple_repeat Simple_repeat 1 30 0 279 358 159 7 chr12 79465044 79465195 -64817294 - MIR3 SINE MIR -21 187 14 28 29 0 0 chr12 79467055 79467090 -64815399 + AT_rich Low_complexity Low_complexity 1 35 0 222 318 0 55 chr12 79468269 79468379 -64814110 - MER5B DNA MER1_type -2 176 73 323 341 12 12 chr12 79468406 79468648 -64813841 + CT-rich Low_complexity Low_complexity 1 242 0 1955 133 58 6 chr12 79468821 79469151 -64813338 + MER46B DNA MER2_type 15 236 0 209 336 104 71 chr12 79469235 79469515 -64812974 - L3 LINE CR1 -1223 354 66 510 308 35 15 chr12 79470706 79470904 -64811585 + L2 LINE L2 3110 3311 -2 2480 268 62 20 chr12 79472003 79474358 -64808131 + L1M3a LINE L1 2 1990 -4046 258 319 0 0 chr12 79474491 79474560 -64807929 + L1M3a LINE L1 2385 2453 -3581 2203 256 43 7 chr12 79474572 79475263 -64807226 + L1M3a LINE L1 2420 3135 -2899 1136 187 46 0 chr12 79475260 79475647 -64806842 + L1M3a LINE L1 3743 4257 -1777 * 337 164 0 16 chr12 79475645 79475706 -64806783 + L1M3a LINE L1 4733 4792 -1242 * 242 312 92 34 chr12 79475839 79475962 -64806527 + L1M4c LINE L1 1530 1644 -4919 2179 75 7 45 chr12 79475962 79476270 -64806219 + AluY SINE Alu 1 296 -15 242 312 92 34 chr12 79476270 79476438 -64806051 + L1M4c LINE L1 1644 1987 -4576 181 125 21 21 chr12 79476478 79476526 -64805963 + (TA)n Simple_repeat Simple_repeat 1 48 0 386 154 13 0 chr12 79476863 79476941 -64805548 + CT-rich Low_complexity Low_complexity 4 82 0 21 0 0 0 chr12 79477416 79477437 -64805052 + AT_rich Low_complexity Low_complexity 1 21 0 382 273 50 66 chr12 79477746 79477944 -64804545 - L1MEc LINE L1 -4170 2226 2032 593 302 102 36 chr12 79478128 79478854 -64803635 - L1MEc LINE L1 -4600 1796 1023 1129 306 74 19 chr12 79478871 79479543 -64802946 + L1MC4 LINE L1 7190 7898 -144 226 272 12 12 chr12 79479543 79479624 -64802865 + (TA)n Simple_repeat Simple_repeat 2 82 0 200 233 0 0 chr12 79480223 79480266 -64802223 + T-rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr12 79480971 79480996 -64801493 + AT_rich Low_complexity Low_complexity 1 25 0 193 369 36 9 chr12 79481333 79481444 -64801045 - L2 LINE L2 -29 3284 3171 33 66 0 0 chr12 79481542 79481603 -64800886 + AT_rich Low_complexity Low_complexity 1 61 0 183 80 0 0 chr12 79481859 79481884 -64800605 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 451 298 115 31 chr12 79481918 79482109 -64800380 + MIR SINE MIR 50 256 -6 2461 40 10 3 chr12 79482193 79482496 -64799993 + AluY SINE Alu 1 305 -6 340 350 179 18 chr12 79482683 79482963 -64799526 + L2 LINE L2 2989 3313 0 210 329 14 0 chr12 79482975 79483045 -64799444 - L2 LINE L2 -778 2536 2466 211 127 127 0 chr12 79483225 79483280 -64799209 + (TTAAA)n Simple_repeat Simple_repeat 1 62 0 195 129 0 0 chr12 79483342 79483373 -64799116 + (TG)n Simple_repeat Simple_repeat 2 32 0 27 29 0 0 chr12 79485273 79485307 -64797182 + AT_rich Low_complexity Low_complexity 1 34 0 181 283 0 19 chr12 79487594 79487647 -64794842 - L2 LINE L2 -4 3268 3217 26 30 0 0 chr12 79487647 79487680 -64794809 + AT_rich Low_complexity Low_complexity 1 33 0 250 340 72 0 chr12 79488012 79488109 -64794380 + L2 LINE L2 3169 3272 0 1349 146 69 4 chr12 79488471 79488746 -64793743 - L1MA4 LINE L1 -6 6294 6002 28 0 0 0 chr12 79488756 79488784 -64793705 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 79489641 79489665 -64792824 + AT_rich Low_complexity Low_complexity 1 24 0 224 273 61 79 chr12 79489665 79489830 -64792659 - MIR SINE MIR -27 235 74 2547 205 67 25 chr12 79489889 79490483 -64792006 - MLT1E2 LTR MaLR -3 623 5 190 331 39 94 chr12 79492268 79492395 -64790094 - L2 LINE L2 -1 3271 3152 201 304 38 25 chr12 79494145 79494224 -64788265 - MER5B DNA MER1_type -29 149 70 250 329 0 0 chr12 79494254 79494336 -64788153 + L3 LINE CR1 920 1001 -576 289 342 66 13 chr12 79494586 79494738 -64787751 + MIR SINE MIR 48 207 -55 203 189 0 0 chr12 79494769 79494806 -64787683 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1122 224 92 58 chr12 79496704 79497151 -64785338 - MLT1C LTR MaLR 0 467 6 410 357 16 44 chr12 79497162 79497414 -64785075 - HAL1 LINE L1 -1409 1098 854 1117 176 29 0 chr12 79498239 79498449 -64784040 - L1MA7 LINE L1 -24 6267 6052 24 24 0 24 chr12 79499394 79499422 -64783067 + AT_rich Low_complexity Low_complexity 1 29 -12 2810 13 3 0 chr12 79499422 79499738 -64782751 + AluYb8 SINE Alu 1 317 -1 24 24 0 24 chr12 79499738 79499751 -64782738 + AT_rich Low_complexity Low_complexity 29 41 0 31 68 0 0 chr12 79499804 79499863 -64782626 + AT_rich Low_complexity Low_complexity 1 59 0 232 275 56 28 chr12 79500022 79500164 -64782325 - L1 LINE L1 -1620 4526 4381 450 283 168 12 chr12 79501056 79501229 -64781260 + MIR SINE MIR 63 262 0 1752 88 12 20 chr12 79502311 79502605 -64779884 - AluSg SINE Alu 0 325 34 489 202 56 28 chr12 79502637 79502815 -64779674 - MER53 DNA DNA -4 185 3 361 298 38 8 chr12 79503755 79503886 -64778603 - MARNA DNA Mariner -348 238 104 237 167 64 51 chr12 79503946 79504024 -64778465 - MER103 DNA DNA -18 148 70 1986 140 0 0 chr12 79505094 79505434 -64777055 - AluSq SINE Alu 0 340 1 23 0 0 0 chr12 79505437 79505460 -64777029 + AT_rich Low_complexity Low_complexity 1 23 0 1767 186 84 14 chr12 79505513 79505883 -64776606 - MSTD LTR MaLR 0 396 1 602 184 152 19 chr12 79508282 79508440 -64774049 + MER46C DNA MER2_type 4 182 -156 880 186 0 45 chr12 79508546 79508723 -64773766 + MER46C DNA MER2_type 169 337 -1 2388 59 13 0 chr12 79508766 79509073 -64773416 - AluY SINE Alu 0 311 1 439 248 16 16 chr12 79509168 79509289 -64773200 + MIR SINE MIR 21 141 -121 563 138 0 0 chr12 79509289 79509376 -64773113 + AluSc SINE Alu 45 131 -178 246 316 0 0 chr12 79509406 79509485 -64773004 + MIR SINE MIR 146 224 -38 288 393 7 7 chr12 79509539 79509679 -64772810 - MIR SINE MIR -115 147 8 242 306 8 16 chr12 79510609 79510730 -64771759 + L1 LINE L1 3692 3811 -2335 21 126 0 0 chr12 79511532 79511707 -64770782 + AT_rich Low_complexity Low_complexity 1 175 0 207 0 0 0 chr12 79512303 79512326 -64770163 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 337 319 54 16 chr12 79513709 79513894 -64768595 + MLT1L LTR MaLR 424 615 0 246 139 0 0 chr12 79514149 79514185 -64768304 + MLT1B LTR MaLR 354 389 -1 234 0 0 0 chr12 79514253 79514279 -64768210 + (TA)n Simple_repeat Simple_repeat 1 26 0 239 322 16 16 chr12 79514461 79514582 -64767907 - L1ME LINE L1 -452 5669 5549 928 273 38 14 chr12 79514648 79514960 -64767529 - L2 LINE L2 -301 3012 2698 825 142 86 12 chr12 79515301 79515463 -64767026 + MER53 DNA DNA 16 189 0 699 333 72 13 chr12 79515504 79515879 -64766610 - MLT1I LTR MaLR -4 405 9 2083 101 25 9 chr12 79518810 79519136 -64763353 - L1PA11 LINE L1 0 6174 5844 308 107 89 0 chr12 79519283 79519339 -64763150 - L1PA11 LINE L1 0 6174 6114 2176 160 109 0 chr12 79519412 79519843 -64762646 - L1MA4 LINE L1 -5 6295 5818 360 230 14 0 chr12 79519891 79519965 -64762524 + MLT1E1 LTR MaLR 1 75 -579 * 2102 226 42 44 chr12 79519960 79520526 -64761963 + MLT1E1 LTR MaLR 35 599 -55 257 276 35 23 chr12 79520805 79520892 -64761597 + MIR3 SINE MIR 121 208 0 220 292 94 42 chr12 79520975 79521071 -64761418 + MIR SINE MIR 40 140 -68 205 182 0 0 chr12 79521601 79521634 -64760855 + A-rich Low_complexity Low_complexity 2 34 0 247 261 15 31 chr12 79522017 79522082 -64760407 - L2 LINE L2 -2 3311 3248 338 276 248 19 chr12 79522820 79523030 -64759459 + MIR SINE MIR 5 262 0 2693 246 63 14 chr12 79524079 79525071 -64757418 - L1M4 LINE L1 -2691 3455 2415 21 89 0 0 chr12 79525765 79525821 -64756668 + AT_rich Low_complexity Low_complexity 1 56 0 301 333 37 37 chr12 79526169 79526578 -64755911 - HAL1 LINE L1 -969 1538 1130 222 307 84 4 chr12 79527420 79527547 -64754942 - MIR SINE MIR -43 165 26 344 271 110 10 chr12 79528211 79528348 -64754141 - MIR SINE MIR -39 169 15 32 67 0 0 chr12 79529245 79529305 -64753184 + AT_rich Low_complexity Low_complexity 1 60 0 2125 113 0 0 chr12 79529343 79529666 -64752823 - AluY SINE Alu 0 323 1 2766 295 127 29 chr12 79530016 79531765 -64750724 + L2 LINE L2 1387 3312 -1 795 251 82 4 chr12 79531827 79532058 -64750431 + MIR SINE MIR 13 261 -1 2206 186 35 15 chr12 79532211 79532609 -64749880 + MER44D DNA MER2_type 1 406 -299 2549 137 46 2 chr12 79532614 79533031 -64749458 + Tigger7 DNA MER2_type 2053 2487 0 286 281 56 0 chr12 79538217 79538306 -64744183 + MIR SINE MIR 34 127 -135 229 118 0 0 chr12 79538335 79538369 -64744120 - MLT1B LTR MaLR 0 390 357 287 275 159 60 chr12 79538814 79538996 -64743493 - MLT1J LTR MaLR -86 425 226 307 197 99 0 chr12 79539117 79539188 -64743301 - MLT1L LTR MaLR -520 95 18 293 337 163 12 chr12 79539529 79539701 -64742788 - MIR SINE MIR -16 246 49 1144 193 102 53 chr12 79539722 79540044 -64742445 - MER58B DNA MER1_type -3 338 1 1253 161 69 50 chr12 79540233 79540493 -64741996 - MLT1B LTR MaLR -122 268 4 277 333 37 37 chr12 79540539 79540656 -64741833 - L2 LINE L2 -5 3267 3151 206 278 189 0 chr12 79540656 79540746 -64741743 + MER5B DNA MER1_type 1 107 -71 186 314 19 29 chr12 79540871 79540976 -64741513 - MIR3 SINE MIR -53 155 52 1804 80 0 4 chr12 79541241 79541491 -64740998 - L1PA7 LINE L1 -3 6151 5903 212 382 76 15 chr12 79544378 79544509 -64737980 - L3b LINE CR1 -13 1570 1432 436 186 0 0 chr12 79544549 79544619 -64737870 + Tigger2 DNA MER2_type 2 71 -2647 * 2304 149 48 39 chr12 79544607 79544965 -64737524 + Tigger2 DNA MER2_type 2273 2626 -92 180 0 0 0 chr12 79544965 79544985 -64737504 + (TTA)n Simple_repeat Simple_repeat 3 22 0 1352 171 8 4 chr12 79544985 79545225 -64737264 - L1PB4 LINE L1 -15 6141 5901 2304 149 48 39 chr12 79545225 79545307 -64737182 + Tigger2 DNA MER2_type 2625 2718 0 312 276 95 67 chr12 79545367 79545577 -64736912 - L1ME3A LINE L1 -116 6054 5839 564 317 90 30 chr12 79546152 79546486 -64736003 - L1MEc LINE L1 -4788 1522 1169 434 62 88 0 chr12 79546576 79546689 -64735800 + (TA)n Simple_repeat Simple_repeat 2 124 0 681 258 52 94 chr12 79546696 79547344 -64735145 - L1MEc LINE L1 -5059 1060 440 22 0 0 0 chr12 79547819 79547841 -64734648 + AT_rich Low_complexity Low_complexity 1 22 0 285 321 75 37 chr12 79547955 79548089 -64734400 - L2 LINE L2 -93 3179 3041 21 0 0 0 chr12 79548791 79548812 -64733677 + AT_rich Low_complexity Low_complexity 1 21 0 425 152 13 0 chr12 79550414 79550493 -64731996 - L1MA7 LINE L1 0 6291 6212 276 279 125 57 chr12 79551254 79551655 -64730834 - L1M4 LINE L1 -1559 4587 4160 655 321 89 23 chr12 79551733 79552216 -64730273 + L1ME3A LINE L1 5415 5929 -241 2077 100 0 4 chr12 79552366 79552647 -64729842 + AluY SINE Alu 21 300 -11 225 139 0 0 chr12 79553246 79553289 -64729200 + (CA)n Simple_repeat Simple_repeat 2 44 0 551 259 17 0 chr12 79553307 79553423 -64729066 - FLAM_A SINE Alu -13 120 3 29 28 0 0 chr12 79553679 79553715 -64728774 + AT_rich Low_complexity Low_complexity 1 36 0 375 315 103 27 chr12 79554635 79554781 -64727708 - MIR3 SINE MIR -32 176 20 1130 271 172 21 chr12 79554963 79555398 -64727091 + MLT1G1 LTR MaLR 72 572 -23 21 0 0 0 chr12 79555495 79555516 -64726973 + AT_rich Low_complexity Low_complexity 1 21 0 404 293 113 8 chr12 79555644 79555777 -64726712 + MIR SINE MIR 34 180 -82 712 273 56 35 chr12 79555813 79556044 -64726445 + MIR SINE MIR 27 262 0 781 316 34 25 chr12 79556647 79556970 -64725519 + L3b LINE CR1 1122 1447 -136 441 239 200 14 chr12 79557860 79558057 -64724432 + MLT1H LTR MaLR 332 549 0 2408 67 0 10 chr12 79558995 79559309 -64723180 - AluY SINE Alu 0 311 1 294 270 48 127 chr12 79559423 79559612 -64722877 - MER5A DNA MER1_type -5 184 11 379 229 12 12 chr12 79561521 79561604 -64720885 + L2 LINE L2 3227 3309 -4 2354 58 0 7 chr12 79562848 79563140 -64719349 - AluY SINE Alu -21 290 1 29 0 0 0 chr12 79563282 79563311 -64719178 + AT_rich Low_complexity Low_complexity 1 29 0 327 333 144 26 chr12 79563501 79563696 -64718793 - L3b LINE CR1 -145 1438 1221 31 26 0 0 chr12 79564867 79564905 -64717584 + AT_rich Low_complexity Low_complexity 1 38 0 256 200 114 0 chr12 79565617 79565687 -64716802 + MIR SINE MIR 113 190 -72 262 324 146 5 chr12 79566439 79566624 -64715865 + L2 LINE L2 3098 3308 -5 274 282 76 30 chr12 79568081 79568212 -64714277 - MIR SINE MIR -6 256 120 301 318 65 70 chr12 79568339 79568553 -64713936 + MIR SINE MIR 1 213 -49 355 316 184 30 chr12 79569146 79569752 -64712737 + L2 LINE L2 2594 3311 -2 239 279 9 63 chr12 79569741 79569852 -64712637 + MIR SINE MIR 78 182 -80 * 212 315 109 22 chr12 79569995 79570087 -64712402 + MER91C DNA MER1_type 20 119 -21 28 71 0 0 chr12 79570226 79570282 -64712207 + AT_rich Low_complexity Low_complexity 1 56 0 369 299 144 30 chr12 79571168 79571369 -64711120 + MIR SINE MIR 21 244 -18 216 304 96 48 chr12 79571672 79571797 -64710692 + MER5A DNA MER1_type 54 184 -5 693 119 15 8 chr12 79572163 79572297 -64710192 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 2087 175 47 24 chr12 79572669 79573092 -64709397 + Tigger2a DNA MER2_type 2 434 0 1175 249 88 27 chr12 79573129 79573502 -64708987 + MSTD LTR MaLR 1 396 0 273 134 31 31 chr12 79573530 79573619 -64708870 + (TA)n Simple_repeat Simple_repeat 2 93 -5 2104 117 0 0 chr12 79573619 79573902 -64708587 - AluSg SINE Alu -27 283 1 273 134 31 31 chr12 79573902 79573909 -64708580 + (TA)n Simple_repeat Simple_repeat 92 98 0 331 347 155 5 chr12 79574139 79574358 -64708131 - MIR SINE MIR 0 262 11 306 247 56 11 chr12 79574529 79574618 -64707871 - MLT1H LTR MaLR -23 526 434 261 0 0 0 chr12 79574797 79574826 -64707663 + (TG)n Simple_repeat Simple_repeat 1 29 0 974 219 57 40 chr12 79574927 79575155 -64707334 - MLT1H LTR MaLR -317 232 1 2420 18 11 0 chr12 79575203 79575488 -64707001 - L1PA2 LINE L1 -4 6151 5864 496 15 44 0 chr12 79577119 79577187 -64705302 + (TTTC)n Simple_repeat Simple_repeat 1 71 0 246 156 0 0 chr12 79577197 79577242 -64705247 + (CA)n Simple_repeat Simple_repeat 1 45 0 1747 166 9 100 chr12 79577263 79577692 -64704797 + MLT1B LTR MaLR 1 390 0 23 33 0 0 chr12 79578526 79578556 -64703933 + GC_rich Low_complexity Low_complexity 1 30 0 201 121 0 0 chr12 79579097 79579130 -64703359 + (TAA)n Simple_repeat Simple_repeat 1 33 0 241 326 0 43 chr12 79579441 79579579 -64702910 + G-rich Low_complexity Low_complexity 3 134 0 407 319 81 87 chr12 79580041 79580537 -64701952 + L1M2 LINE L1 466 958 -5891 1974 125 4 0 chr12 79585851 79586163 -64696326 - AluSx SINE Alu 0 313 1 461 333 0 11 chr12 79586768 79586942 -64695547 - MIR SINE MIR -86 176 5 3093 184 23 6 chr12 79587066 79587713 -64694776 - L1MC2 LINE L1 -19 6325 5668 591 294 33 69 chr12 79588919 79589194 -64693295 - L2 LINE L2 -1772 1542 1278 568 229 49 7 chr12 79589194 79589338 -64693151 - MER45A DNA AcHobo 0 178 29 338 361 8 0 chr12 79589354 79589476 -64693013 - L2 LINE L2 -2029 1285 1163 23 0 0 0 chr12 79590059 79590082 -64692407 + AT_rich Low_complexity Low_complexity 1 23 0 314 47 0 0 chr12 79590670 79590713 -64691776 + MADE1 DNA Mariner 1 43 -37 22 56 0 0 chr12 79591920 79591956 -64690533 + AT_rich Low_complexity Low_complexity 1 36 0 345 250 0 13 chr12 79592536 79592612 -64689877 - MER5A DNA MER1_type -111 78 4 300 91 0 0 chr12 79593828 79593872 -64688617 + (ATG)n Simple_repeat Simple_repeat 2 45 0 979 245 5 0 chr12 79594694 79594902 -64687587 + MER3 DNA MER1_type 1 209 0 22 56 0 0 chr12 79595105 79595141 -64687348 + AT_rich Low_complexity Low_complexity 1 36 0 251 291 38 0 chr12 79595998 79596077 -64686412 + MER94 DNA DNA 2 83 -51 303 329 86 0 chr12 79596252 79596392 -64686097 - MIR SINE MIR -2 260 109 377 289 141 13 chr12 79596426 79596582 -64685907 - MIR SINE MIR -26 236 61 349 354 30 55 chr12 79597530 79597694 -64684795 + L2 LINE L2 3113 3272 0 189 147 0 0 chr12 79597924 79597958 -64684531 + (TA)n Simple_repeat Simple_repeat 2 35 0 * 198 0 0 0 chr12 79597957 79597979 -64684510 + (T)n Simple_repeat Simple_repeat 1 22 0 443 296 266 0 chr12 79599045 79599244 -64683245 + MIR SINE MIR 11 262 0 26 74 0 0 chr12 79599687 79599741 -64682748 + AT_rich Low_complexity Low_complexity 1 54 0 2642 78 3 22 chr12 79599929 79600288 -64682201 - THE1A LTR MaLR 0 355 4 735 0 54 9 chr12 79600305 79600416 -64682073 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 238 363 37 4 chr12 79601039 79601176 -64681313 - MIR SINE MIR -62 146 19 36 108 0 0 chr12 79601454 79601602 -64680887 + AT_rich Low_complexity Low_complexity 1 148 0 210 247 12 59 chr12 79601709 79601794 -64680695 + (TCTCTG)n Simple_repeat Simple_repeat 2 82 0 424 316 43 22 chr12 79601809 79602087 -64680402 - L1ME4a LINE L1 -178 5943 5660 183 129 0 0 chr12 79602329 79602360 -64680129 + (TTA)n Simple_repeat Simple_repeat 1 31 0 265 196 71 116 chr12 79602518 79602630 -64679859 - MIR SINE MIR -75 187 81 853 276 31 9 chr12 79605905 79606130 -64676359 + MIR SINE MIR 32 261 -1 27 0 0 0 chr12 79606530 79606557 -64675932 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 79607296 79607317 -64675172 + AT_rich Low_complexity Low_complexity 1 21 0 417 302 36 5 chr12 79607449 79607641 -64674848 + L1MA9 LINE L1 6077 6274 -38 2247 63 28 0 chr12 79608068 79608355 -64674134 + AluY SINE Alu 1 295 -16 23 0 0 0 chr12 79608355 79608378 -64674111 + AT_rich Low_complexity Low_complexity 1 23 0 393 22 0 0 chr12 79608559 79608605 -64673884 + (TG)n Simple_repeat Simple_repeat 2 47 0 435 68 0 0 chr12 79609136 79609195 -64673294 + (TA)n Simple_repeat Simple_repeat 2 60 0 222 363 115 6 chr12 79609843 79610025 -64672464 + L2 LINE L2 3110 3311 -2 207 0 0 0 chr12 79610460 79610483 -64672006 + (A)n Simple_repeat Simple_repeat 1 23 0 2279 64 44 3 chr12 79612751 79613046 -64669443 - AluSg SINE Alu -3 307 1 27 62 0 0 chr12 79614000 79614048 -64668441 + AT_rich Low_complexity Low_complexity 1 48 0 1961 103 0 4 chr12 79614251 79614512 -64667977 - AluSq SINE Alu -16 297 38 2454 75 0 3 chr12 79615281 79615587 -64666902 + AluSp SINE Alu 1 305 -8 1899 150 7 0 chr12 79617498 79617792 -64664697 - AluJb SINE Alu -12 300 5 1769 190 8 20 chr12 79618904 79619256 -64663233 - MER7A DNA MER2_type 0 346 1 266 260 65 0 chr12 79622541 79622618 -64659871 + MIR SINE MIR 110 191 -71 423 0 0 0 chr12 79623102 79623149 -64659340 + (TG)n Simple_repeat Simple_repeat 2 48 0 236 350 21 21 chr12 79623741 79623838 -64658651 - L2 LINE L2 -242 3030 2934 1742 182 0 17 chr12 79623947 79624244 -64658245 + AluJb SINE Alu 3 294 -18 209 288 23 62 chr12 79624283 79624514 -64657975 - L2 LINE L2 -559 2755 2466 22 0 0 0 chr12 79624916 79624938 -64657551 + AT_rich Low_complexity Low_complexity 1 22 0 1339 233 7 0 chr12 79625170 79625457 -64657032 - Charlie1b DNA MER1_type -234 289 1 41 36 0 0 chr12 79626340 79626395 -64656094 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr12 79626521 79626549 -64655940 + AT_rich Low_complexity Low_complexity 1 28 0 265 256 25 16 chr12 79626970 79627091 -64655398 + (TA)n Simple_repeat Simple_repeat 1 122 0 255 272 118 39 chr12 79627844 79628101 -64654388 - L1MC/D LINE L1 -391 5730 5607 2063 118 0 16 chr12 79630471 79630775 -64651714 - AluSx SINE Alu -13 299 1 225 151 68 0 chr12 79630902 79630975 -64651514 + (TA)n Simple_repeat Simple_repeat 1 78 0 189 74 0 0 chr12 79631307 79631334 -64651155 + (CA)n Simple_repeat Simple_repeat 2 28 0 485 296 87 17 chr12 79632376 79632606 -64649883 + MIR SINE MIR 17 262 0 185 307 67 13 chr12 79637196 79637271 -64645218 + L2 LINE L2 3234 3312 -1 28 0 0 0 chr12 79642589 79642617 -64639872 + AT_rich Low_complexity Low_complexity 1 28 0 567 175 0 10 chr12 79644917 79645020 -64637469 - FLAM_A SINE Alu -10 132 31 268 263 53 0 chr12 79645043 79645119 -64637370 - MIR SINE MIR -75 187 108 23 33 0 0 chr12 79645509 79645539 -64636950 + AT_rich Low_complexity Low_complexity 1 30 0 2649 175 39 23 chr12 79646276 79646847 -64635642 - L1MC1 LINE L1 -1 6332 5753 236 191 0 0 chr12 79646852 79646894 -64635595 - MLT2B1 LTR ERVL 0 464 423 2165 202 36 45 chr12 79646947 79647418 -64635071 - MLT2B1 LTR ERVL -53 467 1 26457 193 40 13 chr12 79647418 79651216 -64631273 - ERVL-B1 LTR ERVL -7 5757 1721 1916 140 4 0 chr12 79651216 79651488 -64631001 + AluSx SINE Alu 1 273 -39 26457 193 40 13 chr12 79651488 79653237 -64629252 - ERVL-B1 LTR ERVL -4043 1721 22 1800 212 99 33 chr12 79653263 79653748 -64628741 - MLT2B1 LTR ERVL -3 517 1 681 153 0 0 chr12 79653757 79653868 -64628621 - L1MC1 LINE L1 -637 5707 5597 210 37 0 0 chr12 79654207 79654234 -64628255 + (TG)n Simple_repeat Simple_repeat 2 28 0 186 394 0 15 chr12 79654444 79654510 -64627979 + MER5A DNA MER1_type 59 123 -66 326 325 49 37 chr12 79654686 79654932 -64627557 - L1ME4a LINE L1 -265 5856 5608 405 54 0 0 chr12 79655745 79655801 -64626688 + (TG)n Simple_repeat Simple_repeat 1 56 0 1128 225 60 44 chr12 79656557 79656921 -64625568 + MER93b LTR ERV1 1 370 -3 300 108 0 245 chr12 79657164 79657266 -64625223 + MADE1 DNA Mariner 4 80 0 2003 216 25 50 chr12 79657433 79657956 -64624533 + MER67D LTR ERV1 5 514 0 2238 59 4 0 chr12 79658067 79658340 -64624149 - AluY SINE Alu -1 310 37 234 269 0 77 chr12 79658589 79658667 -64623822 + L2 LINE L2 3193 3264 -8 1421 191 46 14 chr12 79659267 79659549 -64622940 + AluJo SINE Alu 1 291 -11 25 65 0 0 chr12 79659939 79659985 -64622504 + AT_rich Low_complexity Low_complexity 1 46 0 1501 248 112 43 chr12 79660655 79661261 -64621228 - L2 LINE L2 -998 2316 1669 1663 180 45 25 chr12 79661951 79662307 -64620182 + MLT1A1 LTR MaLR 1 363 -2 303 333 0 0 chr12 79662565 79662646 -64619843 - MLT1L LTR MaLR -130 485 405 3390 68 14 5 chr12 79663361 79663801 -64618688 - MLT2A1 LTR ERVL 0 444 1 620 39 0 0 chr12 79663801 79663878 -64618611 - HERVL-A1 LTR ERVL 0 5654 5578 1167 162 166 33 chr12 79664037 79664339 -64618150 + MER61A LTR ERV1 2 343 0 2168 169 37 65 chr12 79664339 79664849 -64617640 + MER61A-int LTR ERV1 1 496 -4721 312 209 45 0 chr12 79664928 79664995 -64617494 + MER61A-int LTR ERV1 631 700 -4517 9627 132 36 19 chr12 79665076 79667117 -64615372 + MER61A-int LTR ERV1 2215 4469 -546 505 103 0 0 chr12 79667118 79667186 -64615303 - MER61-int LTR ERV1 -914 4303 4236 6508 123 13 9 chr12 79667200 79668514 -64613975 + MER61A-int LTR ERV1 3858 5217 0 1416 196 66 42 chr12 79668515 79668847 -64613642 + MER61A LTR ERV1 4 343 0 1295 97 15 0 chr12 79668847 79669042 -64613447 - HERVL-A1 LTR ERVL -80 5574 5377 782 74 0 0 chr12 79669047 79669142 -64613347 - HERVL-A1 LTR ERVL -2244 3410 3316 7841 101 6 12 chr12 79669144 79670278 -64612211 - HERVL-A1 LTR ERVL -2918 2736 1610 238 143 0 0 chr12 79670347 79670389 -64612100 + (T)n Simple_repeat Simple_repeat 1 42 0 293 366 14 14 chr12 79670457 79670664 -64611825 + CT-rich Low_complexity Low_complexity 1 207 0 12288 79 0 1 chr12 79670848 79672411 -64610078 - HERVL-A1 LTR ERVL -4093 1561 1 2116 66 55 4 chr12 79672411 79672773 -64609716 - MLT2A1 LTR ERVL 0 444 1 452 274 274 7 chr12 79673181 79673538 -64608951 - L2 LINE L2 -78 3235 2779 186 240 20 20 chr12 79674326 79674376 -64608113 + MIR3 SINE MIR 8 57 -151 419 317 211 31 chr12 79675590 79676003 -64606486 + HAL1 LINE L1 1095 1581 -926 233 296 23 0 chr12 79676153 79676241 -64606248 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 1912 88 11 4 chr12 79676500 79676762 -64605727 + AluY SINE Alu 48 311 0 432 276 104 7 chr12 79677061 79677340 -64605149 + L1ME LINE L1 2725 3030 -3116 1558 294 110 59 chr12 79677381 79678791 -64603698 + L1ME LINE L1 3202 4698 -1448 1905 196 11 3 chr12 79678791 79679149 -64603340 - MLT1A1 LTR MaLR -4 361 1 1558 294 110 59 chr12 79679149 79679288 -64603201 + L1ME LINE L1 4698 4829 -1317 2238 109 0 0 chr12 79679432 79679726 -64602763 + AluSg SINE Alu 1 294 -16 288 279 101 0 chr12 79679919 79680048 -64602441 + L1ME LINE L1 5311 5452 -712 16640 33 0 0 chr12 79681092 79683871 -64598618 + L1PA3 LINE L1 3378 6159 0 203 61 30 0 chr12 79684164 79684197 -64598292 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 4261 189 51 41 chr12 79684300 79684801 -64597688 + L1MA10 LINE L1 5263 5757 -577 252 0 0 0 chr12 79684801 79684829 -64597660 + (CA)n Simple_repeat Simple_repeat 2 29 0 4261 189 51 41 chr12 79684829 79685386 -64597103 + L1MA10 LINE L1 5757 6332 -2 29 47 0 0 chr12 79686031 79686074 -64596415 + AT_rich Low_complexity Low_complexity 1 43 0 345 330 0 9 chr12 79686194 79686303 -64596186 - L2 LINE L2 -15 3298 3191 28 0 0 0 chr12 79686921 79686949 -64595540 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 79687817 79687842 -64594647 + AT_rich Low_complexity Low_complexity 1 25 0 7503 25 52 0 chr12 79687857 79689035 -64593454 - L1PA4 LINE L1 0 6155 4957 1591 220 62 52 chr12 79690412 79690912 -64591577 - MLT1D LTR MaLR 0 505 1 212 345 163 14 chr12 79692116 79692484 -64590005 + L2 LINE L2 709 1131 -2183 23 0 0 0 chr12 79692600 79692623 -64589866 + AT_rich Low_complexity Low_complexity 1 23 0 587 360 101 26 chr12 79692626 79693251 -64589238 + L2 LINE L2 2218 2889 -425 25 31 0 0 chr12 79694070 79694102 -64588387 + AT_rich Low_complexity Low_complexity 1 32 0 330 87 0 0 chr12 79694446 79694492 -64587997 + (TTA)n Simple_repeat Simple_repeat 2 47 0 194 380 13 0 chr12 79694492 79694571 -64587918 - MIR SINE MIR -119 143 64 253 86 0 0 chr12 79695700 79695735 -64586754 + MADE1 DNA Mariner 46 80 0 210 416 0 0 chr12 79696460 79696549 -64585940 - MIR SINE MIR -149 113 25 29 0 0 0 chr12 79696903 79696932 -64585557 + AT_rich Low_complexity Low_complexity 1 29 0 2125 137 13 0 chr12 79696973 79697280 -64585209 - AluSx SINE Alu 0 312 2 24 0 0 0 chr12 79697675 79697699 -64584790 + AT_rich Low_complexity Low_complexity 1 24 0 4248 209 129 52 chr12 79698957 79700463 -64582026 + MER52A LTR ERV1 1 1622 -133 283 403 21 39 chr12 79700603 79700836 -64581653 - L2 LINE L2 -177 3095 2867 686 251 43 47 chr12 79701007 79701218 -64581271 + MER63A DNA MER1_type 1 210 0 327 301 136 30 chr12 79701290 79701489 -64581000 - Charlie8 DNA MER1_type -2152 265 46 1508 172 93 0 chr12 79702034 79702302 -64580187 + AluSx SINE Alu 1 293 -19 219 69 0 0 chr12 79702696 79702725 -64579764 + (CA)n Simple_repeat Simple_repeat 2 30 0 218 125 21 0 chr12 79704709 79704757 -64577732 + A-rich Low_complexity Low_complexity 4 52 0 187 273 182 13 chr12 79704932 79705009 -64577480 - L2 LINE L2 0 3272 3183 2093 98 34 0 chr12 79705487 79705782 -64576707 - AluSq SINE Alu -8 305 1 457 152 15 38 chr12 79706744 79706876 -64575613 + CT-rich Low_complexity Low_complexity 3 131 0 359 56 19 0 chr12 79706902 79706956 -64575533 + (TC)n Simple_repeat Simple_repeat 2 56 0 229 342 98 10 chr12 79707075 79707147 -64575342 + MIR SINE MIR 47 111 -151 3068 122 39 0 chr12 79707147 79707638 -64574851 + MER75 DNA T2_type 1 510 -4 229 342 98 10 chr12 79707638 79707758 -64574731 + MIR SINE MIR 111 256 -6 191 365 10 39 chr12 79707898 79708002 -64574487 - L2 LINE L2 -176 3096 2996 227 329 10 29 chr12 79708410 79708617 -64573872 - L1MEc LINE L1 -4538 1858 1656 622 163 24 12 chr12 79708667 79708833 -64573656 + CT-rich Low_complexity Low_complexity 1 168 0 1461 72 0 0 chr12 79708885 79709251 -64573238 + (G)n Simple_repeat Simple_repeat 1 366 0 537 215 0 0 chr12 79709253 79709402 -64573087 + G-rich Low_complexity Low_complexity 1 149 0 14764 229 27 6 chr12 79709510 79713477 -64569012 - L1P4 LINE L1 -579 6237 2204 1914 195 15 52 chr12 79713476 79713952 -64568537 + L1PA13 LINE L1 1626 2083 -4704 * 598 197 8 29 chr12 79713950 79714122 -64568367 - L1P4 LINE L1 -4572 2222 2048 * 315 362 116 41 chr12 79714221 79714687 -64567802 + L2 LINE L2 2722 3230 -83 2076 139 3 3 chr12 79714687 79714997 -64567492 - AluSx SINE Alu -2 310 1 315 362 116 41 chr12 79714997 79715032 -64567457 + L2 LINE L2 3230 3261 -52 326 233 138 43 chr12 79715179 79715295 -64567194 + L1ME LINE L1 5362 5488 -2507 228 299 13 0 chr12 79715393 79715470 -64567019 + L1ME LINE L1 5693 5770 -351 879 246 49 20 chr12 79716227 79716430 -64566059 + MER58A DNA MER1_type 1 209 -15 258 279 15 15 chr12 79718567 79718635 -64563854 - L3 LINE CR1 -64 1513 1446 224 305 0 74 chr12 79718809 79718904 -64563585 - L2 LINE L2 -1 3312 3225 344 262 156 0 chr12 79719336 79719458 -64563031 - MIR SINE MIR -30 232 92 31 26 0 0 chr12 79719565 79719603 -64562886 + AT_rich Low_complexity Low_complexity 1 38 0 759 293 29 117 chr12 79719703 79720284 -64562205 + MLT1G LTR MaLR 61 590 0 334 272 211 52 chr12 79720781 79720994 -64561495 + MIR SINE MIR 15 261 -1 266 198 0 50 chr12 79724026 79724150 -64558339 - MIR SINE MIR 0 262 91 3199 217 65 15 chr12 79724199 79724852 -64557637 + L1MA7 LINE L1 4549 5168 -1123 2292 175 21 12 chr12 79724852 79725274 -64557215 - MSTB LTR MaLR 0 426 1 3199 217 65 15 chr12 79725274 79726223 -64556266 + L1MA7 LINE L1 5168 6266 -25 456 183 42 21 chr12 79726254 79726396 -64556093 + MER96B DNA MER1_type? 52 196 -221 217 236 34 11 chr12 79726546 79726635 -64555854 + (TA)n Simple_repeat Simple_repeat 1 91 0 1958 193 88 12 chr12 79726635 79727035 -64555454 + Tigger1 DNA MER2_type 1 430 -1988 7965 121 29 27 chr12 79727307 79727542 -64554947 + Tigger1 DNA MER2_type 387 620 -1798 1659 174 39 4 chr12 79727542 79727823 -64554666 + AluJo SINE Alu 4 294 -18 7965 121 29 27 chr12 79727823 79728922 -64553567 + Tigger1 DNA MER2_type 620 1723 -695 218 41 61 20 chr12 79729177 79729226 -64553263 + (TA)n Simple_repeat Simple_repeat 1 51 0 1960 180 47 33 chr12 79729391 79729819 -64552670 - Tigger2a DNA MER2_type 0 434 1 6282 27 1 1 chr12 79729922 79730668 -64551821 - L1PA4 LINE L1 0 6155 5410 7184 58 4 0 chr12 79730668 79731582 -64550907 + L1P LINE L1 4061 4978 -1168 199 89 0 44 chr12 79731587 79731632 -64550857 + (TTTTTA)n Simple_repeat Simple_repeat 3 45 0 3891 143 56 19 chr12 79731646 79732464 -64550025 + Tigger3b DNA MER2_type 80 942 -289 339 200 0 40 chr12 79732647 79732722 -64549767 - MIR SINE MIR -165 97 26 21 0 0 0 chr12 79733007 79733028 -64549461 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr12 79735322 79735361 -64547128 + AT_rich Low_complexity Low_complexity 1 39 0 259 224 35 0 chr12 79735905 79735963 -64546526 - L2 LINE L2 -20 3293 3234 23 0 0 0 chr12 79737689 79737712 -64544777 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr12 79738263 79738297 -64544192 + AT_rich Low_complexity Low_complexity 1 34 0 1866 136 22 0 chr12 79738300 79738573 -64543916 - AluSx SINE Alu -33 279 1 292 325 131 19 chr12 79738609 79738769 -64543720 - MIR SINE MIR -30 232 55 243 245 92 37 chr12 79738881 79739044 -64543445 - HAL1b LINE L1 -2 1346 1175 * 290 246 61 18 chr12 79739012 79739126 -64543363 - L1ME4a LINE L1 -169 5952 5834 1293 267 38 23 chr12 79740332 79740812 -64541677 + L1M4 LINE L1 4173 4659 -1487 822 298 90 44 chr12 79742107 79742829 -64539660 - L1M4 LINE L1 -2026 4120 3366 47 19 0 0 chr12 79742938 79742992 -64539497 + AT_rich Low_complexity Low_complexity 1 54 0 240 191 0 0 chr12 79743547 79743594 -64538895 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 5405 30 0 0 chr12 79744731 79745368 -64537121 + L1PA4 LINE L1 5515 6151 -4 394 304 43 7 chr12 79746112 79746250 -64536239 + MIR SINE MIR 94 236 -26 371 113 16 0 chr12 79746524 79746586 -64535903 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 681 214 7 28 chr12 79746602 79746747 -64535742 - AluJb SINE Alu -34 278 137 3681 241 17 28 chr12 79747624 79748838 -64533651 - L1 LINE L1 -1202 4944 3784 1860 206 27 23 chr12 79748844 79749497 -64532992 + L1M2 LINE L1 4900 5553 -743 1617 194 7 0 chr12 79749753 79750037 -64532452 - AluJb SINE Alu -24 288 3 341 268 111 31 chr12 79750069 79750320 -64532169 - L1MCa LINE L1 -4793 1589 1184 845 329 63 27 chr12 79750342 79751255 -64531234 - L1MCa LINE L1 -5283 1280 335 25 31 0 0 chr12 79751334 79751366 -64531123 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr12 79853463 79853487 -64429002 + AT_rich Low_complexity Low_complexity 1 24 0 1614 152 4 16 chr12 79854706 79854962 -64427527 + AluJb SINE Alu 1 253 -59 2093 123 7 3 chr12 79855233 79855533 -64426956 - AluSq SINE Alu -10 303 3 264 59 0 0 chr12 79855786 79855820 -64426669 + (TG)n Simple_repeat Simple_repeat 2 35 0 397 247 33 27 chr12 79857260 79857410 -64425079 + MER63 DNA MER1_type 908 1058 -4 472 296 165 5 chr12 79857528 79857734 -64424755 - MIR SINE MIR -7 255 17 377 248 20 20 chr12 79859156 79859278 -64423211 + MIR SINE MIR 93 213 -49 1830 182 7 0 chr12 79859494 79859791 -64422698 - AluJo SINE Alu -13 299 1 2006 123 0 0 chr12 79859936 79860232 -64422257 - AluSx SINE Alu 0 306 11 523 0 30 0 chr12 79861799 79861866 -64420623 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 424 224 68 54 chr12 79862119 79862266 -64420223 + L2 LINE L2 3130 3278 -35 296 315 17 134 chr12 79862358 79862456 -64420033 + L2 LINE L2 2549 2604 -710 1742 82 0 135 chr12 79862456 79862759 -64419730 - AluSq SINE Alu -45 268 7 296 315 17 134 chr12 79862759 79862898 -64419591 + L2 LINE L2 2604 2758 -556 2072 115 11 0 chr12 79863351 79863637 -64418852 - AluSq SINE Alu -24 289 1 714 220 0 7 chr12 79863643 79863784 -64418705 - FRAM SINE Alu -21 155 16 270 314 165 8 chr12 79864555 79864676 -64417813 - MIR3 SINE MIR -53 155 16 378 115 0 0 chr12 79864678 79864739 -64417750 + (TC)n Simple_repeat Simple_repeat 2 62 0 222 37 0 0 chr12 79864739 79864766 -64417723 + (CA)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr12 79867110 79867134 -64415355 + AT_rich Low_complexity Low_complexity 1 24 0 228 282 81 40 chr12 79867806 79867930 -64414559 - LTR16A1 LTR ERVL 0 457 329 277 354 94 36 chr12 79868040 79868263 -64414226 - L2 LINE L2 -159 3113 2878 386 315 42 24 chr12 79868695 79868860 -64413629 - MIR SINE MIR -39 223 56 2176 86 27 5 chr12 79868896 79869288 -64413201 - LTR7 LTR ERV1 -2 448 1 2211 4 0 0 chr12 79869925 79870201 -64412288 - AluYa5 SINE Alu 0 320 45 197 139 0 56 chr12 79870773 79870809 -64411680 - L2 LINE L2 -12 3260 3227 * 540 215 314 6 chr12 79870779 79870951 -64411538 - MIR SINE MIR -10 252 28 1564 212 96 4 chr12 79870961 79871387 -64411102 + L1ME1 LINE L1 5723 6334 0 1273 201 117 61 chr12 79872636 79873114 -64409375 - MLT1D LTR MaLR 0 505 1 840 316 126 38 chr12 79873449 79874086 -64408403 + L2 LINE L2 1878 2570 -744 1574 257 83 18 chr12 79874087 79874676 -64407813 + MLT1E2 LTR MaLR 1 607 -17 250 280 21 21 chr12 79874687 79874780 -64407709 + L2 LINE L2 2565 2657 -657 3752 72 37 0 chr12 79876432 79876946 -64405543 - MER41A LTR ERV1 0 554 22 2384 91 3 0 chr12 79876948 79877256 -64405233 + AluSq SINE Alu 1 309 -4 253 67 0 0 chr12 79877278 79877308 -64405181 - MER41B LTR ERV1 -599 36 7 185 272 113 33 chr12 79877345 79877490 -64404999 + L2 LINE L2 2858 3011 -261 217 284 68 0 chr12 79877725 79877799 -64404690 + L2 LINE L2 1965 2043 -1271 472 220 29 80 chr12 79877799 79877971 -64404518 - MER45 DNA AcHobo 0 1581 24 804 270 226 34 chr12 79877978 79878867 -64403622 + L2 LINE L2 2037 3133 -180 279 0 0 0 chr12 79878886 79878917 -64403572 + (CA)n Simple_repeat Simple_repeat 1 31 0 253 214 143 20 chr12 79879290 79879388 -64403101 - L1ME4a LINE L1 -30 6091 5982 796 279 33 21 chr12 79879855 79880095 -64402394 - MIR SINE MIR -14 248 6 263 232 85 0 chr12 79880206 79880288 -64402201 - L1ME4a LINE L1 -502 5619 5531 342 264 102 48 chr12 79880327 79880494 -64401995 - L1ME4a LINE L1 -2360 5448 5273 1906 146 24 7 chr12 79880763 79881057 -64401432 - AluJb SINE Alu -13 299 1 308 266 100 50 chr12 79881083 79881272 -64401217 + MIR SINE MIR 69 262 0 279 306 129 38 chr12 79881593 79881954 -64400535 - L2 LINE L2 -217 3055 2626 1707 166 91 30 chr12 79882922 79883362 -64399127 + Charlie4a DNA MER1_type 37 503 -5 252 322 11 0 chr12 79883365 79883455 -64399034 - MARNA DNA Mariner -410 176 86 557 198 93 39 chr12 79883488 79883670 -64398819 + MIR SINE MIR 71 262 0 180 287 275 6 chr12 79883893 79884060 -64398429 + MIR SINE MIR 22 233 -29 1117 121 30 0 chr12 79884666 79884832 -64397657 - AluSg/x SINE Alu 0 312 142 1325 148 5 0 chr12 79884832 79885035 -64397454 + AluSg/x SINE Alu 85 288 -24 184 244 0 0 chr12 79885438 79885483 -64397006 + MIR3 SINE MIR 159 203 -5 276 268 113 52 chr12 79885740 79885837 -64396652 + MIR SINE MIR 2 104 -158 21 36 0 0 chr12 79886554 79886582 -64395907 + AT_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr12 79887058 79887091 -64395398 + AT_rich Low_complexity Low_complexity 1 33 0 199 281 88 0 chr12 79887868 79887925 -64394564 + MIR SINE MIR 83 144 -118 28 48 0 0 chr12 79888304 79888346 -64394143 + AT_rich Low_complexity Low_complexity 1 42 0 255 250 22 0 chr12 79889139 79889231 -64393258 + (TTAA)n Simple_repeat Simple_repeat 4 97 0 21 36 0 0 chr12 79889663 79889691 -64392798 + AT_rich Low_complexity Low_complexity 1 28 0 249 158 298 0 chr12 79889874 79889931 -64392558 + MADE1 DNA Mariner 2 75 -5 22 80 0 0 chr12 79890499 79890549 -64391940 + AT_rich Low_complexity Low_complexity 1 50 0 693 240 40 11 chr12 79891230 79891405 -64391084 - MIR SINE MIR -12 250 71 21 36 0 0 chr12 79894026 79894054 -64388435 + AT_rich Low_complexity Low_complexity 1 28 0 323 314 73 29 chr12 79894056 79894193 -64388296 - L3 LINE CR1 -379 1198 1056 372 258 236 0 chr12 79896334 79896512 -64385977 + MER112 DNA MER1_type 30 249 -11 317 328 60 22 chr12 79897627 79897761 -64384728 - MIR SINE MIR -42 220 82 668 253 11 5 chr12 79897901 79898087 -64384402 + MER5A DNA MER1_type 1 187 -2 1805 141 20 20 chr12 79898262 79898560 -64383929 - AluJb SINE Alu -6 306 9 1556 281 53 46 chr12 79898661 79899416 -64383073 + L1ME3A LINE L1 5315 6081 -89 180 264 0 19 chr12 79900634 79900687 -64381802 - L2 LINE L2 0 3313 3262 201 190 207 0 chr12 79901460 79901518 -64380971 - MIR SINE MIR -155 107 38 188 330 181 11 chr12 79901974 79902068 -64380421 - L3b LINE CR1 -130 1453 1344 28 0 0 0 chr12 79902253 79902281 -64380208 + AT_rich Low_complexity Low_complexity 1 28 0 29 84 0 0 chr12 79902896 79902967 -64379522 + AT_rich Low_complexity Low_complexity 1 71 0 25 0 0 0 chr12 79903079 79903104 -64379385 + AT_rich Low_complexity Low_complexity 1 25 0 443 268 79 79 chr12 79903196 79903237 -64379252 + L1ME LINE L1 5294 5334 -828 2226 108 0 0 chr12 79903237 79903534 -64378955 + AluY SINE Alu 3 299 -12 443 268 79 79 chr12 79903534 79903557 -64378932 + L1ME LINE L1 5334 5356 -806 1775 199 42 12 chr12 79903557 79903926 -64378563 + MLT2D LTR ERVL 1 384 -30 351 0 0 0 chr12 79903926 79903965 -64378524 + (CA)n Simple_repeat Simple_repeat 2 40 0 1775 199 42 12 chr12 79903965 79903997 -64378492 + MLT2D LTR ERVL 384 414 0 443 268 79 79 chr12 79903997 79904300 -64378189 + L1ME LINE L1 5355 5662 -500 426 256 232 43 chr12 79904355 79904562 -64377927 + MIR SINE MIR 13 258 -4 272 248 38 19 chr12 79904562 79904667 -64377822 + L1ME LINE L1 5708 5814 -307 328 258 0 0 chr12 79904791 79904857 -64377632 - L2 LINE L2 0 3313 3248 225 65 0 0 chr12 79905068 79905099 -64377390 + (TG)n Simple_repeat Simple_repeat 2 32 0 1925 136 4 0 chr12 79905391 79905670 -64376819 - AluSx SINE Alu -15 297 18 43321 48 1 0 chr12 79906110 79912260 -64370229 - L1PA4 LINE L1 -1 6154 1 2005 113 21 79 chr12 79912267 79912648 -64369841 - L1PA14 LINE L1 -1 6160 5802 21 0 0 0 chr12 79912879 79912900 -64369589 + AT_rich Low_complexity Low_complexity 1 21 0 226 314 116 0 chr12 79913144 79913230 -64369259 + MIR3 SINE MIR 65 160 -48 231 214 337 0 chr12 79913233 79913322 -64369167 - MER5A DNA MER1_type -3 186 68 336 182 0 15 chr12 79913322 79913388 -64369101 + MER20 DNA MER1_type 155 219 0 25 0 0 0 chr12 79913482 79913507 -64368982 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr12 79914178 79914218 -64368271 + AT_rich Low_complexity Low_complexity 1 40 0 242 268 36 0 chr12 79914897 79914953 -64367536 - MLT1K LTR MaLR -284 304 247 204 40 0 0 chr12 79915016 79915041 -64367448 + (CA)n Simple_repeat Simple_repeat 2 26 0 206 254 55 0 chr12 79915103 79915213 -64367276 + (TA)n Simple_repeat Simple_repeat 2 117 0 1170 184 197 7 chr12 79915380 79915685 -64366804 + MLT1F LTR MaLR 180 542 0 292 297 79 0 chr12 79915840 79915941 -64366548 - MIR3 SINE MIR -18 190 82 25 0 0 0 chr12 79915992 79916017 -64366472 + AT_rich Low_complexity Low_complexity 1 25 0 242 258 0 15 chr12 79916020 79916086 -64366403 + (TA)n Simple_repeat Simple_repeat 1 65 0 1579 46 0 0 chr12 79916086 79916280 -64366209 - L1MA1 LINE L1 -23 6279 6086 200 309 211 23 chr12 79916400 79916575 -64365914 - MIR SINE MIR -1 261 54 216 0 0 0 chr12 79916761 79916785 -64365704 + (TC)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr12 79916784 79916808 -64365681 + (CA)n Simple_repeat Simple_repeat 1 24 0 196 267 58 125 chr12 79916835 79916955 -64365534 + MIR SINE MIR 76 187 -75 473 268 142 49 chr12 79917280 79917647 -64364842 + MLT1G LTR MaLR 1 375 -215 225 147 0 0 chr12 79918043 79918077 -64364412 + Tigger5 DNA MER2_type 1 34 -2289 1697 122 4 11 chr12 79918102 79918364 -64364125 + Tigger5 DNA MER2_type 2064 2323 0 303 243 78 19 chr12 79918376 79918479 -64364010 - L2 LINE L2 -82 3231 3123 3218 110 40 18 chr12 79918878 79919158 -64363331 - L1P4 LINE L1 -411 5755 5483 1980 120 0 21 chr12 79919158 79919477 -64363012 + AluSq SINE Alu 1 313 0 3218 110 40 18 chr12 79919477 79919813 -64362676 - L1P4 LINE L1 -683 5483 5116 2192 157 28 2 chr12 79919813 79920206 -64362283 + L1PA16 LINE L1 5753 6156 -10 298 314 68 17 chr12 79920426 79920544 -64361945 + L2 LINE L2 3190 3313 0 395 256 23 0 chr12 79920546 79920632 -64361857 + MIR SINE MIR 27 114 -148 333 0 0 0 chr12 79920737 79920774 -64361715 + (TG)n Simple_repeat Simple_repeat 2 38 0 201 147 0 0 chr12 79920777 79920811 -64361678 + (TA)n Simple_repeat Simple_repeat 2 35 0 227 348 0 0 chr12 79920871 79920960 -64361529 - L1MC4 LINE L1 -1340 6702 6614 231 114 0 0 chr12 79920969 79921013 -64361476 - LTR66 LTR ERVL -172 438 395 230 114 0 0 chr12 79920979 79921023 -64361466 + LTR66 LTR ERVL 395 438 -172 * 21 36 0 0 chr12 79921269 79921297 -64361192 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr12 79921650 79921679 -64360810 + AT_rich Low_complexity Low_complexity 1 29 0 358 303 0 41 chr12 79922827 79922972 -64359517 - L2 LINE L2 -1 3312 3174 365 283 20 10 chr12 79923114 79923213 -64359276 + MIR3 SINE MIR 82 181 -27 375 315 42 30 chr12 79923916 79924081 -64358408 + MLT1J LTR MaLR 234 400 -111 359 331 35 7 chr12 79924668 79924810 -64357679 + MIR SINE MIR 29 174 -88 397 227 0 0 chr12 79925053 79925119 -64357370 + L2 LINE L2 3248 3313 0 25 0 0 0 chr12 79925189 79925214 -64357275 + AT_rich Low_complexity Low_complexity 1 25 0 385 246 9 27 chr12 79925930 79926040 -64356449 - MLT1J LTR MaLR -18 493 386 2208 109 3 0 chr12 79926215 79926509 -64355980 - AluSp SINE Alu -18 295 1 4017 133 94 3 chr12 79926694 79927346 -64355143 + MER50 LTR ERV1 1 711 -23 2718 91 112 5 chr12 79927416 79927836 -64354653 + MER4C LTR ERV1 1 465 0 311 316 115 11 chr12 79929193 79929367 -64353122 - L1ME LINE L1 -391 5754 5563 243 319 43 0 chr12 79929379 79929473 -64353016 - L1P5 LINE L1 -625 5531 5434 731 274 109 66 chr12 79929474 79930558 -64351931 - L1ME LINE L1 -913 5216 4087 477 316 74 45 chr12 79930720 79931752 -64350737 - L1MEd LINE L1 -4739 1571 415 22 0 0 0 chr12 79932545 79932567 -64349922 + AT_rich Low_complexity Low_complexity 1 22 0 652 351 79 34 chr12 79932942 79933358 -64349131 - L2 LINE L2 -508 2806 2372 181 307 13 40 chr12 79933392 79933467 -64349022 - L2 LINE L2 -1027 2287 2215 2579 62 3 0 chr12 79933682 79933987 -64348502 - AluSg SINE Alu -2 308 3 24 0 0 0 chr12 79934414 79934438 -64348051 + AT_rich Low_complexity Low_complexity 1 24 0 1614 152 4 16 chr12 79935657 79935913 -64346576 + AluJb SINE Alu 1 253 -59 2093 123 7 3 chr12 79936184 79936484 -64346005 - AluSq SINE Alu -10 303 3 264 59 0 0 chr12 79936737 79936771 -64345718 + (TG)n Simple_repeat Simple_repeat 2 35 0 397 247 33 27 chr12 79938211 79938361 -64344128 + MER63 DNA MER1_type 908 1058 -4 472 296 165 5 chr12 79938479 79938685 -64343804 - MIR SINE MIR -7 255 17 377 248 20 20 chr12 79940108 79940230 -64342259 + MIR SINE MIR 93 213 -49 1800 184 7 0 chr12 79940444 79940737 -64341752 - AluJo SINE Alu -13 299 5 324 236 151 9 chr12 79940847 79940953 -64341536 + MARNA DNA Mariner 240 360 -226 204 125 0 0 chr12 79941062 79941094 -64341395 + (GA)n Simple_repeat Simple_repeat 1 32 0 357 336 14 7 chr12 79941217 79941363 -64341126 + MARNA DNA Mariner 403 549 -37 409 301 60 113 chr12 79941684 79941950 -64340539 + L2 LINE L2 3017 3268 -4 497 238 8 16 chr12 79942602 79942728 -64339761 - MER45A DNA AcHobo -2 176 52 1480 277 42 30 chr12 79942985 79943512 -64338977 - MLT1H LTR MaLR -4 545 13 528 266 80 35 chr12 79943658 79943857 -64338632 - MIR SINE MIR -29 233 26 236 294 17 90 chr12 79943920 79944097 -64338392 + L2 LINE L2 2924 3087 -185 2430 81 3 0 chr12 79944156 79944463 -64338026 - AluSg SINE Alu -2 308 1 562 313 50 55 chr12 79944976 79945376 -64337113 + MLT1J LTR MaLR 110 507 -4 478 238 8 63 chr12 79945470 79945596 -64336893 + L2 LINE L2 3195 3313 0 309 338 52 39 chr12 79947979 79948133 -64334356 - MIR SINE MIR -8 254 99 2261 85 0 10 chr12 79948396 79948690 -64333799 - AluSx SINE Alu -15 297 7 261 139 0 0 chr12 79950337 79950380 -64332109 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1534 106 97 9 chr12 79950418 79950645 -64331844 - AluY SINE Alu -36 275 29 216 333 20 20 chr12 79950721 79950820 -64331669 + MIR SINE MIR 81 179 -83 243 322 67 72 chr12 79951045 79951225 -64331264 - MIR3 SINE MIR 0 208 30 21 71 0 0 chr12 79951696 79951738 -64330751 + AT_rich Low_complexity Low_complexity 1 42 0 2112 116 7 10 chr12 79952541 79952843 -64329646 - AluSx SINE Alu -6 306 6 203 146 42 21 chr12 79952952 79953000 -64329489 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 256 252 155 68 chr12 79954649 79954927 -64327562 - L2 LINE L2 -4 3268 2967 304 315 17 134 chr12 79955269 79955408 -64327081 - L2 LINE L2 -556 2758 2657 1743 82 0 135 chr12 79955408 79955711 -64326778 + AluSq SINE Alu 7 268 -45 304 315 17 134 chr12 79955711 79955809 -64326680 - L2 LINE L2 -657 2657 2549 423 224 68 54 chr12 79955901 79956048 -64326441 - L2 LINE L2 -35 3278 3130 430 17 34 0 chr12 79956301 79956360 -64326129 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2000 127 0 0 chr12 79957928 79958224 -64324265 + AluSx SINE Alu 11 306 0 2381 89 0 16 chr12 79958369 79958682 -64323807 + AluSg SINE Alu 1 308 -2 466 291 64 108 chr12 79960683 79961027 -64321462 - L2 LINE L2 -3 3269 2941 1649 177 8 46 chr12 79961031 79961420 -64321069 + L1MB5 LINE L1 5783 6156 -18 365 260 130 31 chr12 79961440 79961632 -64320857 - L2 LINE L2 -363 2951 2741 255 152 0 0 chr12 79961636 79961682 -64320807 + (TG)n Simple_repeat Simple_repeat 2 47 0 186 43 0 0 chr12 79961791 79961814 -64320675 + (CA)n Simple_repeat Simple_repeat 2 24 0 1275 253 46 22 chr12 79963803 79964301 -64318188 + MLT2F LTR ERVL 1 599 -64 30 93 0 0 chr12 79964306 79964392 -64318097 + AT_rich Low_complexity Low_complexity 1 86 0 435 181 29 6 chr12 79964410 79964581 -64317908 + (TA)n Simple_repeat Simple_repeat 1 175 0 225 148 37 0 chr12 79964592 79964646 -64317843 + (TA)n Simple_repeat Simple_repeat 2 57 0 2113 128 0 3 chr12 79964742 79965039 -64317450 + AluSx SINE Alu 1 296 -16 1783 112 0 0 chr12 79965039 79965290 -64317199 + AluSc SINE Alu 50 302 0 900 210 52 109 chr12 79965290 79965756 -64316733 - LTR37B LTR ERV1 -23 445 7 302 301 188 0 chr12 79966072 79966205 -64316284 - MIR SINE MIR -3 259 102 918 176 37 59 chr12 79966262 79966449 -64316040 - AluJo SINE Alu -22 290 108 679 204 22 7 chr12 79966456 79966593 -64315896 - FLAM_C SINE Alu 0 143 5 1004 272 50 38 chr12 79967158 79967500 -64314989 + L2 LINE L2 2968 3313 0 256 178 65 0 chr12 79967594 79967701 -64314788 + MER113 DNA MER1_type? 89 202 -319 227 356 0 0 chr12 79967868 79967941 -64314548 - MIR SINE MIR -57 151 79 378 304 27 0 chr12 79968723 79968835 -64313654 + MIR3 SINE MIR 84 198 -10 2083 161 0 0 chr12 79969284 79969594 -64312895 + AluSx SINE Alu 3 312 0 252 310 85 39 chr12 79969764 79969893 -64312596 + MIR SINE MIR 10 144 -118 2096 135 3 6 chr12 79970109 79970421 -64312068 - AluSx SINE Alu -1 311 1 197 321 74 0 chr12 79970535 79970616 -64311873 + MIR SINE MIR 148 234 -28 2284 117 0 0 chr12 79970726 79971025 -64311464 + AluSp SINE Alu 3 301 -12 873 270 138 34 chr12 79971082 79971186 -64311303 - L2 LINE L2 -14 3299 3207 506 114 13 0 chr12 79971186 79971265 -64311224 - MADE1 DNA Mariner 0 80 1 873 270 138 34 chr12 79971265 79971538 -64310951 - L2 LINE L2 -106 3207 2883 1554 227 272 8 chr12 79971540 79972055 -64310434 - L2 LINE L2 -555 2759 2109 252 0 0 0 chr12 79972555 79972583 -64309906 + (A)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr12 79973136 79973159 -64309330 + AT_rich Low_complexity Low_complexity 1 23 0 620 267 107 5 chr12 79973187 79973374 -64309115 - MIR SINE MIR -55 207 2 1850 175 49 3 chr12 79973485 79973834 -64308655 + MLT1A1 LTR MaLR 1 365 0 2214 122 3 0 chr12 79973948 79974243 -64308246 - AluSp SINE Alu -15 298 3 1237 205 29 0 chr12 79974641 79974914 -64307575 + L1MB5 LINE L1 5894 6174 0 292 351 0 0 chr12 79976211 79976288 -64306201 - L3 LINE CR1 -97 1480 1404 1952 120 120 27 chr12 79976447 79976780 -64305709 + THE1B LTR MaLR 1 364 0 966 289 8 11 chr12 79976931 79977197 -64305292 - L3 LINE CR1 -234 1343 1079 636 244 76 5 chr12 79977222 79977419 -64305070 - MIR SINE MIR 0 262 52 1210 300 31 52 chr12 79977585 79978453 -64304036 - L2 LINE L2 0 3313 2472 515 332 23 33 chr12 79978496 79978710 -64303779 - MIR SINE MIR -27 235 24 190 293 171 23 chr12 79978882 79979145 -64303344 + L3 LINE CR1 1066 1367 -210 21 36 0 0 chr12 79979396 79979424 -64303065 + AT_rich Low_complexity Low_complexity 1 28 0 646 340 28 4 chr12 79980555 79980808 -64301681 - MIR SINE MIR -1 261 3 267 31 0 0 chr12 79981528 79981560 -64300929 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1868 144 25 0 chr12 79981574 79981852 -64300637 - AluSx SINE Alu -27 285 1 452 322 6 6 chr12 79982658 79982838 -64299651 - MLT1L LTR MaLR 0 615 436 213 311 0 33 chr12 79984377 79984438 -64298051 - L3 LINE CR1 -3 1574 1516 257 241 48 36 chr12 79984486 79984569 -64297920 + MER5A DNA MER1_type 56 139 -50 196 275 8 137 chr12 79984994 79985125 -64297364 - L2 LINE L2 -6 3307 3194 667 303 124 42 chr12 79985416 79985822 -64296667 - L2 LINE L2 -1204 2110 1638 1856 130 4 0 chr12 79985822 79986083 -64296406 - AluY SINE Alu -17 294 33 667 303 124 42 chr12 79986083 79986273 -64296216 - L2 LINE L2 -1676 1638 1465 229 327 11 21 chr12 79986420 79986532 -64295957 + CT-rich Low_complexity Low_complexity 2 188 0 22 0 0 0 chr12 79986768 79986790 -64295699 + AT_rich Low_complexity Low_complexity 1 22 0 1156 266 48 76 chr12 79988570 79989105 -64293384 - L2 LINE L2 0 3313 2779 24 0 0 0 chr12 79991293 79991317 -64291172 + AT_rich Low_complexity Low_complexity 1 24 0 267 275 77 11 chr12 79991695 79991786 -64290703 + L2 LINE L2 3214 3310 -3 266 50 25 0 chr12 79991859 79991899 -64290590 + (TA)n Simple_repeat Simple_repeat 1 41 0 385 340 19 13 chr12 79994191 79994347 -64288142 - MLT1K LTR MaLR -429 159 3 2187 131 0 0 chr12 79995626 79995932 -64286557 - AluSx SINE Alu -6 306 1 765 175 108 45 chr12 79996028 79996314 -64286175 - MER33 DNA MER1_type 0 324 21 369 0 0 0 chr12 79997018 79997059 -64285430 + (CA)n Simple_repeat Simple_repeat 2 42 0 1067 195 82 14 chr12 79997313 79997812 -64284677 - MLT1E1 LTR MaLR 0 654 3 337 286 18 42 chr12 79998055 79998223 -64284266 + LTR67 LTR ERVL 354 517 -40 282 56 0 0 chr12 79999100 79999136 -64283353 + (CA)n Simple_repeat Simple_repeat 2 37 0 247 331 40 24 chr12 79999317 79999441 -64283048 + MIR3 SINE MIR 47 172 -36 1995 164 0 0 chr12 80000211 80000515 -64281974 + AluSx SINE Alu 1 304 -8 369 285 138 47 chr12 80000808 80001071 -64281418 + MLT1J LTR MaLR 246 613 -2 734 297 75 48 chr12 80001166 80001604 -64280885 + MLT1J2 LTR MaLR 1 450 0 1481 191 45 131 chr12 80001789 80002339 -64280150 + MLT1D LTR MaLR 3 505 0 398 387 52 29 chr12 80002595 80002977 -64279512 - L2 LINE L2 -445 2869 2479 286 263 0 0 chr12 80003553 80003610 -64278879 + L2 LINE L2 3245 3301 -12 217 231 259 19 chr12 80003596 80003704 -64278785 - MIR SINE MIR -6 256 123 * 400 333 30 30 chr12 80003775 80003943 -64278546 - L2 LINE L2 -976 2338 2171 207 114 0 0 chr12 80004011 80004046 -64278443 + (CA)n Simple_repeat Simple_repeat 2 36 0 418 279 7 52 chr12 80004057 80004211 -64278278 + MER112 DNA MER1_type 108 254 -6 387 284 83 65 chr12 80004231 80004460 -64278029 + Charlie8 DNA MER1_type 2 234 -2183 1729 187 5 65 chr12 80005422 80005644 -64276845 - MLT1A1 LTR MaLR 0 365 174 1827 111 4 0 chr12 80005644 80005888 -64276601 - AluSq SINE Alu -14 299 55 1729 187 5 65 chr12 80005888 80006050 -64276439 - MLT1A1 LTR MaLR -191 174 4 1068 188 44 113 chr12 80007287 80007676 -64274813 + MLT1A1 LTR MaLR 2 363 -2 257 288 61 0 chr12 80007897 80007998 -64274491 - MIR SINE MIR -63 145 45 207 0 0 0 chr12 80008435 80008458 -64274031 + (T)n Simple_repeat Simple_repeat 1 23 0 361 309 100 62 chr12 80008540 80008793 -64273696 + LTR67 LTR ERVL 212 481 -76 1449 218 85 63 chr12 80008793 80009298 -64273191 - MLT2B1 LTR ERVL 0 520 5 361 309 100 62 chr12 80009298 80009364 -64273125 + LTR67 LTR ERVL 481 543 -14 1161 334 59 14 chr12 80009395 80010062 -64272427 - L2 LINE L2 -5 3308 2596 1877 129 0 21 chr12 80011375 80011655 -64270834 + AluJb SINE Alu 1 274 -38 28 48 0 0 chr12 80011657 80011699 -64270790 + AT_rich Low_complexity Low_complexity 1 42 0 2737 89 11 3 chr12 80011973 80012345 -64270144 - THE1C LTR MaLR 0 375 1 433 256 86 74 chr12 80012392 80012786 -64269703 - L1ME4a LINE L1 -188 5933 5535 230 250 102 21 chr12 80012814 80012951 -64269538 - L1ME4a LINE L1 -694 5457 5328 277 282 64 44 chr12 80012974 80013272 -64269217 - L1ME4a LINE L1 -2513 3633 3330 2250 99 0 17 chr12 80013482 80013784 -64268705 - AluSc SINE Alu -12 297 1 2065 129 13 3 chr12 80014192 80014495 -64267994 - AluJb SINE Alu -6 306 1 228 289 31 31 chr12 80014873 80014970 -64267519 + Charlie7 DNA MER1_type 5 101 -2511 * 267 174 104 26 chr12 80014960 80015075 -64267414 + Charlie7 DNA MER1_type 2427 2550 -62 474 261 45 57 chr12 80015106 80015193 -64267296 - LTR16A LTR ERVL -38 412 326 815 199 193 0 chr12 80015193 80015374 -64267115 + MER20 DNA MER1_type 4 219 0 474 261 45 57 chr12 80015374 80015462 -64267027 - LTR16A LTR ERVL -124 326 239 1428 143 16 0 chr12 80015717 80015968 -64266521 - L1MA7 LINE L1 -2 6289 6035 320 283 106 56 chr12 80016728 80016926 -64265563 - L1ME3A LINE L1 -1 6169 5962 2338 279 67 16 chr12 80016971 80018408 -64264081 - L1ME3A LINE L1 -202 5968 4441 21 36 0 0 chr12 80018434 80018462 -64264027 + AT_rich Low_complexity Low_complexity 1 28 0 3472 104 0 38 chr12 80018462 80019017 -64263472 - L1MA3 LINE L1 -1 6304 5771 16357 83 7 2 chr12 80019021 80022091 -64260398 - L1PA7 LINE L1 -13 6141 3085 3226 130 0 4 chr12 80022108 80022617 -64259872 - L1PA14 LINE L1 -7 6154 5648 1848 91 34 0 chr12 80022633 80022691 -64259798 - L1PB1 LINE L1 -156 5995 5938 14744 167 29 6 chr12 80022691 80022835 -64259654 - L1PBa LINE L1 -360 6653 6514 432 0 0 0 chr12 80022835 80022883 -64259606 + (TA)n Simple_repeat Simple_repeat 1 48 0 14744 167 29 6 chr12 80022883 80027935 -64254554 - L1PBa LINE L1 -499 6514 1311 884 147 39 13 chr12 80027942 80028098 -64254391 - L1PBa LINE L1 -5709 1154 995 1113 134 0 35 chr12 80028098 80028299 -64254190 - L1PBa LINE L1 -6669 194 1 680 277 36 43 chr12 80028309 80028612 -64253877 - L1MDa LINE L1 -1870 4670 4370 603 194 9 9 chr12 80028686 80028794 -64253695 - FLAM_A SINE Alu -34 108 1 4070 237 68 64 chr12 80028798 80029063 -64253426 - L1MDa LINE L1 -2168 4372 4109 2368 105 0 0 chr12 80029063 80029368 -64253121 + AluSx SINE Alu 1 305 -7 4070 237 68 64 chr12 80029368 80031389 -64251100 - L1MDa LINE L1 -2431 4109 2112 1828 178 13 0 chr12 80031575 80031873 -64250616 - AluJb SINE Alu -10 302 1 194 196 0 78 chr12 80032063 80032114 -64250375 + L2 LINE L2 3266 3312 -1 1663 205 109 30 chr12 80033361 80033829 -64248660 - MLT1D LTR MaLR 0 505 1 2112 195 45 72 chr12 80033838 80034367 -64248122 - MLT2B1 LTR ERVL -5 515 1 24 32 0 0 chr12 80035082 80035113 -64247376 + AT_rich Low_complexity Low_complexity 1 31 0 2067 125 0 0 chr12 80035722 80036009 -64246480 + AluSx SINE Alu 3 289 -23 21 0 0 0 chr12 80036009 80036030 -64246459 + AT_rich Low_complexity Low_complexity 1 21 0 547 75 0 25 chr12 80036129 80036209 -64246280 + Alu SINE Alu 227 304 -7 38 22 0 0 chr12 80040300 80040345 -64242144 + AT_rich Low_complexity Low_complexity 1 45 0 186 40 0 0 chr12 80040345 80040353 -64242136 + (TA)n Simple_repeat Simple_repeat 1 8 -17 2219 118 0 0 chr12 80040353 80040650 -64241839 + AluSx SINE Alu 1 297 -15 186 40 0 0 chr12 80040650 80040666 -64241823 + (TA)n Simple_repeat Simple_repeat 7 25 0 409 204 21 0 chr12 80041341 80041356 -64241133 - L1MA4A LINE L1 -24 6279 6265 521 207 78 0 chr12 80041356 80041472 -64241017 - L1PB4 LINE L1 -23 6133 6009 267 224 34 116 chr12 80041509 80041656 -64240833 + HsTC2 DNA Tc2 53 187 -1711 269 358 68 18 chr12 80041829 80042050 -64240439 + HsTC2 DNA Tc2 550 781 -1117 724 181 203 33 chr12 80042829 80043011 -64239478 + MER20 DNA MER1_type 6 218 -1 2097 163 13 0 chr12 80043565 80043963 -64238526 + L1PA15 LINE L1 4949 5351 -795 2885 131 9 0 chr12 80043984 80044433 -64238056 - L1PA14 LINE L1 -2 6159 5707 255 189 0 19 chr12 80044433 80044486 -64238003 + L1PA15 LINE L1 5985 6036 -129 227 271 0 0 chr12 80044738 80044797 -64237692 + LTR67 LTR ERVL 494 552 -5 281 300 209 13 chr12 80045073 80045380 -64237109 + L2 LINE L2 2944 3310 -3 303 335 94 59 chr12 80045742 80046049 -64236440 - L2 LINE L2 -20 3252 2935 191 149 0 164 chr12 80048385 80048452 -64234037 - L2 LINE L2 -2 3311 3256 21 0 0 0 chr12 80048905 80048926 -64233563 + AT_rich Low_complexity Low_complexity 1 21 0 1094 271 177 50 chr12 80049356 80050222 -64232267 - L2 LINE L2 -5 3308 2305 2220 131 11 37 chr12 80050673 80051047 -64231442 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr12 80052059 80052084 -64230405 + AT_rich Low_complexity Low_complexity 1 25 0 4027 170 58 4 chr12 80053191 80053886 -64228603 - MER44D DNA MER2_type -1 604 1 198 321 0 0 chr12 80054063 80054119 -64228370 - L2 LINE L2 -56 3216 3161 2315 166 13 0 chr12 80054119 80054510 -64227979 - MER57A LTR ERV1 0 403 8 1401 160 0 0 chr12 80055045 80055264 -64227225 - AluJb SINE Alu -7 305 87 244 229 0 48 chr12 80055419 80055502 -64226987 + GA-rich Low_complexity Low_complexity 1 79 0 740 128 0 0 chr12 80056098 80056200 -64226289 + AluSg/x SINE Alu 157 258 -54 594 316 45 16 chr12 80056884 80057128 -64225361 - MIR SINE MIR 0 262 12 1801 184 33 17 chr12 80057261 80057620 -64224869 + MLT1A1 LTR MaLR 1 365 0 438 289 142 37 chr12 80057982 80058200 -64224289 - MIR SINE MIR -12 250 10 2083 161 0 0 chr12 80058370 80058680 -64223809 - AluSx SINE Alu 0 312 3 378 304 27 0 chr12 80059130 80059242 -64223247 - MIR3 SINE MIR -10 198 84 227 356 0 0 chr12 80060023 80060096 -64222393 + MIR SINE MIR 79 151 -57 288 165 55 9 chr12 80060263 80060372 -64222117 - MER113 DNA MER1_type? -319 202 89 1004 272 50 38 chr12 80060468 80060810 -64221679 - L2 LINE L2 0 3313 2968 679 204 22 7 chr12 80061375 80061512 -64220977 + FLAM_C SINE Alu 5 143 0 918 176 37 59 chr12 80061519 80061706 -64220783 + AluJo SINE Alu 108 290 -22 302 301 188 0 chr12 80061763 80061896 -64220593 + MIR SINE MIR 102 259 -3 889 197 48 129 chr12 80062212 80062678 -64219811 + LTR37B LTR ERV1 7 509 41 1782 112 0 0 chr12 80062678 80062931 -64219558 - AluSc SINE Alu 0 302 50 * 2113 128 0 3 chr12 80062929 80063226 -64219263 - AluSx SINE Alu -16 296 1 889 197 48 129 chr12 80063226 80063262 -64219227 + LTR37B LTR ERV1 803 468 0 225 148 37 0 chr12 80063322 80063376 -64219113 + (TA)n Simple_repeat Simple_repeat 2 57 0 437 174 35 6 chr12 80063387 80063559 -64218930 + (TA)n Simple_repeat Simple_repeat 2 178 0 22 88 0 0 chr12 80063577 80063634 -64218855 + AT_rich Low_complexity Low_complexity 1 57 0 1275 253 46 22 chr12 80063639 80064137 -64218352 - MLT2F LTR ERVL -64 599 1 186 43 0 0 chr12 80066125 80066148 -64216341 + (TG)n Simple_repeat Simple_repeat 2 24 0 255 152 0 0 chr12 80066257 80066303 -64216186 + (CA)n Simple_repeat Simple_repeat 2 47 0 365 260 130 31 chr12 80066307 80066499 -64215990 + L2 LINE L2 2741 2951 -363 1649 177 8 46 chr12 80066519 80066908 -64215581 - L1MB5 LINE L1 -18 6156 5783 466 291 64 108 chr12 80066912 80067256 -64215233 + L2 LINE L2 2941 3269 -3 2389 89 0 16 chr12 80069255 80069569 -64212920 - AluSg SINE Alu -1 309 1 1999 127 0 0 chr12 80069714 80070010 -64212479 - AluSx SINE Alu 0 306 11 430 17 34 0 chr12 80071578 80071637 -64210852 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 423 224 68 54 chr12 80071890 80072037 -64210452 + L2 LINE L2 3130 3278 -35 304 315 17 134 chr12 80072129 80072227 -64210262 + L2 LINE L2 2549 2604 -710 1743 82 0 135 chr12 80072227 80072530 -64209959 - AluSq SINE Alu -45 268 7 304 315 17 134 chr12 80072530 80072669 -64209820 + L2 LINE L2 2604 2758 -556 256 252 155 68 chr12 80073011 80073289 -64209200 + L2 LINE L2 2967 3268 -4 203 146 42 21 chr12 80074938 80074986 -64207503 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2129 116 7 10 chr12 80075095 80075397 -64207092 + AluSx SINE Alu 6 306 -6 21 71 0 0 chr12 80076201 80076243 -64206246 + AT_rich Low_complexity Low_complexity 1 42 0 235 330 67 67 chr12 80076714 80076893 -64205596 + MIR3 SINE MIR 30 208 0 221 333 20 20 chr12 80077118 80077217 -64205272 - MIR SINE MIR -83 179 81 1542 109 117 8 chr12 80077293 80077532 -64204957 + AluY SINE Alu 29 293 -18 261 139 0 0 chr12 80077558 80077601 -64204888 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 2268 93 0 10 chr12 80079242 80079542 -64202947 + AluSx SINE Alu 1 297 -15 302 338 52 39 chr12 80079806 80079960 -64202529 + MIR SINE MIR 99 254 -8 477 238 8 63 chr12 80082343 80082469 -64200020 - L2 LINE L2 0 3313 3195 441 319 41 26 chr12 80082563 80082833 -64199656 - MLT1J LTR MaLR -4 507 234 2415 81 3 3 chr12 80083476 80083784 -64198705 + AluSg SINE Alu 1 308 -2 225 290 12 99 chr12 80083843 80084005 -64198484 - L2 LINE L2 -185 3087 2940 530 266 80 35 chr12 80084084 80084283 -64198206 + MIR SINE MIR 26 233 -29 1337 275 42 30 chr12 80084429 80084956 -64197533 + MLT1H LTR MaLR 13 545 -4 457 229 8 16 chr12 80085213 80085335 -64197154 + MER45A DNA AcHobo 52 172 -6 415 301 60 113 chr12 80085991 80086257 -64196232 - L2 LINE L2 -4 3268 3017 317 336 14 7 chr12 80086578 80086724 -64195765 - MARNA DNA Mariner -37 549 403 204 125 0 0 chr12 80086847 80086879 -64195610 + (TC)n Simple_repeat Simple_repeat 1 32 0 291 236 151 9 chr12 80086988 80087094 -64195395 - MARNA DNA Mariner -226 360 240 1835 184 7 0 chr12 80087204 80087497 -64194992 + AluJo SINE Alu 5 299 -13 376 248 20 20 chr12 80087713 80087835 -64194654 - MIR SINE MIR -49 213 93 466 296 165 5 chr12 80089258 80089464 -64193025 + MIR SINE MIR 17 255 -7 354 247 33 27 chr12 80089582 80089732 -64192757 - MER63 DNA MER1_type -4 1057 907 264 59 0 0 chr12 80091172 80091206 -64191283 + (CA)n Simple_repeat Simple_repeat 2 35 0 1971 125 10 20 chr12 80091457 80091760 -64190729 + AluSx SINE Alu 1 300 -12 539 283 65 42 chr12 80091960 80092268 -64190221 + L1ME4a LINE L1 3319 3633 -2513 354 284 68 27 chr12 80092279 80092427 -64190062 + L1ME4a LINE L1 5316 5469 -652 344 261 86 74 chr12 80092456 80092850 -64189639 + L1ME4a LINE L1 5535 5933 -188 405 92 31 0 chr12 80092897 80092962 -64189527 + THE1C LTR MaLR 1 67 -308 341 310 0 42 chr12 80092988 80093130 -64189359 + C-rich Low_complexity Low_complexity 1 136 0 241 185 25 56 chr12 80093141 80093303 -64189186 + CT-rich Low_complexity Low_complexity 3 159 0 189 0 0 0 chr12 80093362 80093383 -64189106 + (TCTCCC)n Simple_repeat Simple_repeat 1 21 0 186 127 18 36 chr12 80093469 80093524 -64188965 + CT-rich Low_complexity Low_complexity 2 55 0 192 152 0 0 chr12 80095567 80095600 -64186889 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 287 234 26 13 chr12 80095606 80095683 -64186806 - MIR SINE MIR -112 150 73 698 267 85 21 chr12 80095718 80095954 -64186535 + MIR SINE MIR 12 262 0 2020 144 35 49 chr12 80096004 80096306 -64186183 + THE1B LTR MaLR 1 299 -65 2352 82 20 7 chr12 80096306 80096611 -64185878 - AluSc SINE Alu 0 309 1 2020 144 35 49 chr12 80096611 80096677 -64185812 + THE1B LTR MaLR 299 364 0 1163 259 66 8 chr12 80098174 80098537 -64183952 + L2 LINE L2 2370 2753 -561 366 243 103 0 chr12 80098755 80098891 -64183598 + LTR67 LTR ERVL 402 551 -6 424 289 143 12 chr12 80099053 80099389 -64183100 - L1ME4a LINE L1 -218 5903 5524 1395 204 162 8 chr12 80099468 80099851 -64182638 - MER31B LTR ERV1 -19 447 6 342 274 81 8 chr12 80100397 80100521 -64181968 - MIR SINE MIR -80 182 50 1035 38 15 0 chr12 80100521 80100652 -64181837 + L1PA4 LINE L1 6023 6155 0 231 231 0 46 chr12 80100761 80100826 -64181663 + MER5A DNA MER1_type 127 188 -1 368 316 9 9 chr12 80101731 80101845 -64180644 + L2 LINE L2 2945 3058 -214 1272 175 83 49 chr12 80101966 80102292 -64180197 - MLT1A2 LTR MaLR -37 337 1 1810 152 0 37 chr12 80102411 80102708 -64179781 + AluJb SINE Alu 1 286 -26 1324 184 62 0 chr12 80102725 80103030 -64179459 + MER33 DNA MER1_type 1 324 0 2204 56 21 11 chr12 80103230 80103516 -64178973 + L1PA8 LINE L1 5884 6172 0 2326 94 0 3 chr12 80103985 80104283 -64178206 + AluSc SINE Alu 1 297 -12 1579 154 25 35 chr12 80104435 80104810 -64177679 - L1PA15-16 LINE L1 -3815 3034 2663 27326 117 13 15 chr12 80104810 80111246 -64171243 + L1PA8 LINE L1 8 6483 -4 9377 145 26 2 chr12 80111244 80112841 -64169648 - L1PA15-16 LINE L1 -4166 2683 1049 * 4310 122 46 4 chr12 80112842 80113517 -64168972 + L1PA16 LINE L1 5454 6156 -10 25 0 0 0 chr12 80113591 80113616 -64168873 + AT_rich Low_complexity Low_complexity 1 25 0 5295 153 29 27 chr12 80113635 80114699 -64167790 + MER11C LTR ERVK 1 1066 -5 21 104 0 0 chr12 80115173 80115250 -64167239 + AT_rich Low_complexity Low_complexity 1 77 0 503 198 79 16 chr12 80115267 80115393 -64167096 + LTR40a LTR ERVL 386 519 0 429 258 60 6 chr12 80115445 80115627 -64166862 - L1M4 LINE L1 -2739 3407 3216 2017 161 102 3 chr12 80116119 80116511 -64165978 - L1PA15-16 LINE L1 -5157 1692 1262 370 198 178 10 chr12 80116770 80116871 -64165618 + MLT1C LTR MaLR 350 467 0 27 0 0 0 chr12 80117354 80117381 -64165108 + AT_rich Low_complexity Low_complexity 1 27 0 2732 92 52 5 chr12 80117675 80118100 -64164389 - LTR56 LTR ERV1 0 445 1 7814 156 37 31 chr12 80118155 80118254 -64164235 + L1ME LINE L1 17 114 -6312 2163 126 0 0 chr12 80118254 80118563 -64163926 + AluSx SINE Alu 1 309 -3 7814 156 37 31 chr12 80118563 80120552 -64161937 + L1ME LINE L1 114 2207 -4219 1947 225 57 9 chr12 80120923 80121971 -64160518 + L1ME LINE L1 2062 3165 -3261 966 240 3 3 chr12 80121998 80122285 -64160204 + L1ME LINE L1 5051 5337 -1089 2183 143 31 8 chr12 80122294 80122678 -64159811 + L1MC1 LINE L1 5941 6333 0 2120 126 3 0 chr12 80122688 80122974 -64159515 + AluSx SINE Alu 1 287 -25 316 182 0 68 chr12 80123907 80123995 -64158494 - MER103 DNA DNA -63 103 22 365 298 44 95 chr12 80124257 80124509 -64157980 + MLT1K LTR MaLR 131 369 -219 292 231 63 35 chr12 80124536 80124679 -64157810 + L1ME LINE L1 5479 5625 -801 248 256 132 16 chr12 80124799 80124928 -64157561 + L1ME LINE L1 5799 5942 -459 3977 200 28 46 chr12 80126502 80127488 -64155001 - LTR5 LTR ERVK 0 969 1 379 298 46 75 chr12 80127597 80127946 -64154543 + LTR16B LTR ERVL 42 380 -84 378 0 0 0 chr12 80127946 80127988 -64154501 + (TG)n Simple_repeat Simple_repeat 1 42 0 317 172 0 0 chr12 80127992 80128056 -64154433 - MER58 DNA MER1_type -2232 188 125 2712 164 30 41 chr12 80128077 80128685 -64153804 - L1MC3 LINE L1 -8 7777 7177 1007 258 79 56 chr12 80128958 80129424 -64153065 + HERV16 LTR ERVL 1713 2189 -2807 292 100 0 0 chr12 80129567 80129607 -64152882 - THE1A LTR MaLR 0 355 316 10866 87 29 0 chr12 80129608 80131126 -64151363 - THE1A-int LTR MaLR -18 1562 1 2580 94 8 0 chr12 80131126 80131477 -64151012 - THE1A LTR MaLR 0 355 2 1797 179 0 4 chr12 80131477 80131757 -64150732 - AluSx SINE Alu -33 279 1 1193 314 46 5 chr12 80131770 80132203 -64150286 + HERV16 LTR ERVL 2362 2812 -2184 714 344 48 26 chr12 80132313 80132859 -64149630 + HERV16 LTR ERVL 3387 3944 -1820 795 289 16 4 chr12 80133834 80134080 -64148409 + L1PA15-16 LINE L1 1321 1569 -5280 * 4811 220 28 27 chr12 80134060 80135868 -64146621 + L1PA15-16 LINE L1 1336 3243 -3606 2499 61 0 0 chr12 80135868 80136165 -64146324 + AluY SINE Alu 1 297 -14 4811 220 28 27 chr12 80136165 80136940 -64145549 + L1PA15-16 LINE L1 3243 4015 -2834 524 178 10 0 chr12 80136947 80137048 -64145441 - L1P5 LINE L1 -409 5747 5646 2124 143 22 25 chr12 80137048 80137412 -64145077 + THE1B LTR MaLR 1 363 -1 2608 80 0 3 chr12 80137414 80137776 -64144713 + THE1B-int LTR MaLR 1 361 -1219 1209 244 37 19 chr12 80137777 80138174 -64144315 - LTR10C LTR ERV1 0 529 188 326 99 58 25 chr12 80138194 80138315 -64144174 + (TA)n Simple_repeat Simple_repeat 1 125 0 1820 128 66 0 chr12 80138379 80138684 -64143805 + THE1-int LTR MaLR 359 683 -897 269 261 0 14 chr12 80139706 80139775 -64142714 - MIR3 SINE MIR -16 192 125 29 28 0 0 chr12 80139887 80139923 -64142566 + AT_rich Low_complexity Low_complexity 1 36 0 204 291 5 5 chr12 80140583 80140747 -64141742 + CT-rich Low_complexity Low_complexity 1 203 0 485 113 0 0 chr12 80141615 80141686 -64140803 - THE1C LTR MaLR 0 428 358 1184 103 0 0 chr12 80141687 80141843 -64140646 + AluSc SINE Alu 154 309 0 1414 156 60 27 chr12 80141846 80142147 -64140342 - THE1C LTR MaLR -64 311 1 9711 108 15 47 chr12 80142147 80143779 -64138710 - THE1C-int LTR MaLR 0 1580 1 1092 140 107 57 chr12 80144122 80144422 -64138067 - THE1C LTR MaLR -58 317 3 512 279 68 22 chr12 80144894 80145357 -64137132 - HAL1b LINE L1 -449 899 392 413 239 12 24 chr12 80145801 80145968 -64136521 - HAL1b LINE L1 -971 377 213 438 295 58 5 chr12 80146086 80146276 -64136213 - L1MD3 LINE L1 -1353 6642 6443 394 200 33 25 chr12 80146349 80146469 -64136020 + MER53 DNA DNA 9 129 -60 1177 158 0 22 chr12 80147341 80147525 -64134964 + AluJo SINE Alu 38 217 -95 6446 58 8 0 chr12 80147626 80148459 -64134030 + L1PA7 LINE L1 5312 6151 -3 2414 77 3 0 chr12 80149430 80149729 -64132760 + AluY SINE Alu 1 300 -11 1758 156 16 25 chr12 80149736 80150051 -64132438 + AluJo SINE Alu 1 312 0 24 53 0 0 chr12 80150051 80150089 -64132400 + AT_rich Low_complexity Low_complexity 1 38 0 496 364 44 49 chr12 80152379 80152832 -64129657 + L2 LINE L2 530 980 -2334 2618 47 6 0 chr12 80152862 80153183 -64129306 - L1PA7 LINE L1 -5 6149 5827 493 108 12 0 chr12 80153183 80153266 -64129223 + L1P LINE L1 4484 4567 -1579 380 293 157 64 chr12 80153407 80153809 -64128680 + L2 LINE L2 2625 3070 -202 23 33 0 0 chr12 80154441 80154471 -64128018 + AT_rich Low_complexity Low_complexity 1 30 0 236 272 254 30 chr12 80154475 80154644 -64127845 + L3 LINE CR1 1367 1573 -4 7783 19 0 0 chr12 80155439 80156469 -64126020 - L1PA4 LINE L1 -3 6152 5123 214 298 128 11 chr12 80157462 80157556 -64124933 - L2 LINE L2 -1 3312 3208 351 174 60 38 chr12 80158828 80159168 -64123321 + (TA)n Simple_repeat Simple_repeat 1 347 0 251 273 0 0 chr12 80159174 80159240 -64123249 - LTR66 LTR ERVL -150 460 395 1433 126 31 0 chr12 80159551 80159774 -64122715 + MER30 DNA MER1_type 1 230 0 341 202 50 35 chr12 80160073 80160206 -64122283 - L1MC/D LINE L1 -299 5822 5706 716 288 4 58 chr12 80160262 80160505 -64121984 - MIR SINE MIR -25 237 8 424 160 160 16 chr12 80160847 80160972 -64121517 - LTR37A LTR ERV1 -2 424 282 294 229 25 51 chr12 80161319 80161437 -64121052 - MER112 DNA MER1_type -101 159 45 430 263 63 0 chr12 80163654 80163749 -64118740 + MER63A DNA MER1_type 110 210 0 215 393 155 5 chr12 80165039 80165245 -64117244 - MIR SINE MIR -6 256 20 207 343 14 0 chr12 80166390 80166460 -64116029 + MIR3 SINE MIR 89 159 -49 6077 53 5 0 chr12 80167129 80167883 -64114606 - L1PA7 LINE L1 -8 6146 5389 186 43 0 0 chr12 80168339 80168362 -64114127 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3929 56 0 0 chr12 80169460 80169945 -64112544 - MER41A LTR ERV1 -69 485 1 426 305 117 25 chr12 80169961 80170200 -64112289 + MIR SINE MIR 2 262 0 1389 236 116 59 chr12 80170344 80170903 -64111586 + MLT1G1 LTR MaLR 5 595 0 1089 103 0 0 chr12 80171507 80171653 -64110836 - AluY SINE Alu -8 303 158 7280 47 0 3 chr12 80171654 80172999 -64109490 - L1PA7 LINE L1 -1 6153 4810 2085 137 0 6 chr12 80173349 80173662 -64108827 - AluSq SINE Alu -2 311 1 654 337 113 6 chr12 80173704 80174066 -64108423 - L3 LINE CR1 -116 1461 1061 940 169 20 46 chr12 80174478 80174673 -64107816 - MER3 DNA MER1_type -8 201 12 413 336 142 13 chr12 80174830 80175056 -64107433 + MIR SINE MIR 8 262 0 2184 132 0 0 chr12 80175853 80176163 -64106326 - AluSx SINE Alu -2 310 1 2073 145 0 0 chr12 80177264 80177567 -64104922 + AluSx SINE Alu 7 309 -3 610 107 0 0 chr12 80177594 80177678 -64104811 - AluS SINE Alu -228 84 1 1689 144 7 14 chr12 80177857 80178141 -64104348 + AluSx SINE Alu 27 308 -4 610 107 0 0 chr12 80178168 80178252 -64104237 - AluS SINE Alu -229 84 1 657 283 109 9 chr12 80178380 80178610 -64103879 - MIR SINE MIR -3 259 7 257 271 182 44 chr12 80178846 80179027 -64103462 + MIR SINE MIR 41 246 -16 310 272 376 0 chr12 80180732 80180857 -64101632 + MIR SINE MIR 2 173 -89 * 360 323 8 48 chr12 80180855 80180979 -64101510 - L2 LINE L2 -1 3271 3153 25 31 0 0 chr12 80181137 80181169 -64101320 + AT_rich Low_complexity Low_complexity 1 32 0 36 53 0 0 chr12 80181731 80181788 -64100701 + AT_rich Low_complexity Low_complexity 1 57 0 1430 256 64 73 chr12 80183901 80184314 -64098175 - MLT1E LTR MaLR -5 588 173 2041 119 3 26 chr12 80184314 80184451 -64098038 + AluSx SINE Alu 1 140 -172 2423 64 0 10 chr12 80184451 80184749 -64097740 + AluY SINE Alu 1 295 -16 477 0 0 0 chr12 80184749 80184802 -64097687 + (TA)n Simple_repeat Simple_repeat 2 54 0 2041 119 3 26 chr12 80184802 80184974 -64097515 + AluSx SINE Alu 138 304 -8 1430 256 64 73 chr12 80184974 80185158 -64097331 - MLT1E LTR MaLR -420 173 3 183 131 16 49 chr12 80185501 80185562 -64096927 + GA-rich Low_complexity Low_complexity 3 61 0 374 304 27 0 chr12 80186314 80186426 -64096063 + MIR3 SINE MIR 84 198 -10 2053 157 0 0 chr12 80186876 80187176 -64095313 + AluSx SINE Alu 3 302 -10 1614 152 4 16 chr12 80187446 80187702 -64094787 - AluJb SINE Alu -59 253 1 24 0 0 0 chr12 80188921 80188945 -64093544 + AT_rich Low_complexity Low_complexity 1 24 0 2552 72 3 0 chr12 80189372 80189677 -64092812 + AluSg SINE Alu 3 308 -2 181 307 13 40 chr12 80189892 80189967 -64092522 + L2 LINE L2 2215 2287 -1027 652 351 79 34 chr12 80190001 80190417 -64092072 + L2 LINE L2 2372 2806 -508 22 0 0 0 chr12 80190792 80190814 -64091675 + AT_rich Low_complexity Low_complexity 1 22 0 2222 95 3 3 chr12 80191533 80191817 -64090672 - AluSc SINE Alu -25 284 1 186 43 0 0 chr12 80191824 80191847 -64090642 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 446 280 17 0 chr12 80193975 80194093 -64088396 - MER94 DNA DNA -14 120 1 29 47 0 0 chr12 80194101 80194144 -64088345 + AT_rich Low_complexity Low_complexity 1 43 0 40 21 0 0 chr12 80194177 80194224 -64088265 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr12 80194272 80194300 -64088189 + AT_rich Low_complexity Low_complexity 1 28 0 224 185 93 0 chr12 80245152 80245206 -64037283 + MIR SINE MIR 204 262 0 182 122 122 24 chr12 80245240 80245281 -64037208 + MIR SINE MIR 143 187 -75 2273 89 7 7 chr12 80245731 80246033 -64036456 + AluSg SINE Alu 1 302 -8 580 231 5 69 chr12 80246054 80246257 -64036232 + L1ME3 LINE L1 5971 6160 -2 207 302 0 0 chr12 80246264 80246307 -64036182 + MER5A DNA MER1_type 80 122 -67 286 274 12 36 chr12 80246455 80246539 -64035950 + MER5A DNA MER1_type 108 189 0 322 333 63 13 chr12 80247728 80247918 -64034571 - MIR3 SINE MIR -3 205 8 597 144 10 10 chr12 80247934 80248031 -64034458 - L1MC1 LINE L1 0 6333 6237 239 298 30 76 chr12 80249388 80249519 -64032970 + MIR SINE MIR 16 140 -68 24 53 0 0 chr12 80249798 80249836 -64032653 + AT_rich Low_complexity Low_complexity 1 38 0 289 245 78 78 chr12 80250020 80250122 -64032367 + L2 LINE L2 3212 3313 0 1846 120 15 7 chr12 80250126 80250400 -64032089 - AluSg1 SINE Alu -10 299 24 245 287 149 11 chr12 80251900 80251987 -64030502 + MIR SINE MIR 34 132 -76 1107 164 24 19 chr12 80252047 80252254 -64030235 + MER3 DNA MER1_type 1 208 -1 2128 135 10 0 chr12 80252305 80252602 -64029887 - AluSx SINE Alu -12 300 1 22 56 0 0 chr12 80252670 80252706 -64029783 + AT_rich Low_complexity Low_complexity 1 36 0 1663 189 18 92 chr12 80253732 80253921 -64028568 - L1ME1 LINE L1 -95 6071 5870 2076 130 0 37 chr12 80253921 80254245 -64028244 + AluSx SINE Alu 1 312 0 1663 189 18 92 chr12 80254245 80254543 -64027946 - L1ME1 LINE L1 -296 5870 5620 432 0 0 0 chr12 80254546 80254594 -64027895 + (TA)n Simple_repeat Simple_repeat 2 49 0 245 176 0 20 chr12 80254598 80254649 -64027840 - L1ME1 LINE L1 -666 5500 5451 2637 238 25 28 chr12 80254650 80254784 -64027705 - L1MEc LINE L1 -5148 1248 1115 2237 120 3 3 chr12 80254784 80255093 -64027396 - AluSx SINE Alu -3 309 1 2637 238 25 28 chr12 80255093 80255680 -64026809 - L1MEc LINE L1 -5281 1115 529 * 14833 24 0 0 chr12 80255674 80258104 -64024385 + L1PA3 LINE L1 3702 6171 0 225 75 0 25 chr12 80258104 80258144 -64024345 + (TAAAA)n Simple_repeat Simple_repeat 1 55 0 1307 266 19 66 chr12 80258144 80258284 -64024205 - L1MEc LINE L1 -5853 543 398 2399 89 3 0 chr12 80258284 80258586 -64023903 + AluSg1 SINE Alu 1 303 -6 1307 266 19 66 chr12 80258586 80258598 -64023891 - L1MEc LINE L1 -5998 398 387 1847 116 49 14 chr12 80258598 80258882 -64023607 + AluSx SINE Alu 3 296 -16 1307 266 19 66 chr12 80258882 80259261 -64023228 - L1MEc LINE L1 -6009 387 36 1897 120 34 0 chr12 80260411 80260678 -64021811 + AluSx SINE Alu 1 276 -36 292 94 38 0 chr12 80260816 80260869 -64021620 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 441 357 16 16 chr12 80261006 80261191 -64021298 + MER5A DNA MER1_type 1 185 -4 664 233 98 47 chr12 80261194 80261409 -64021080 + MIR SINE MIR 16 241 -21 342 302 43 71 chr12 80262315 80262367 -64020122 + L2 LINE L2 2817 2869 -403 3452 158 10 16 chr12 80262367 80262976 -64019513 - MER6A DNA MER2_type 0 605 1 342 302 43 71 chr12 80262976 80263178 -64019311 + L2 LINE L2 2869 3064 -208 401 312 57 25 chr12 80263477 80263686 -64018803 + MIR SINE MIR 9 222 -40 249 231 137 51 chr12 80264067 80264184 -64018305 - MIR SINE MIR -73 189 63 636 297 40 22 chr12 80264916 80264998 -64017491 + MIR SINE MIR 19 98 -164 1460 126 65 13 chr12 80264998 80265228 -64017261 - AluJb SINE Alu -10 302 61 636 297 40 22 chr12 80265228 80265367 -64017122 + MIR SINE MIR 98 244 -18 618 364 93 19 chr12 80265584 80266013 -64016476 - L2 LINE L2 -1 3271 2811 2245 126 3 0 chr12 80266572 80266881 -64015608 - AluSp SINE Alu -3 310 1 1916 129 8 66 chr12 80267012 80267391 -64015098 + MER46B DNA MER2_type 2 233 -3 218 394 26 18 chr12 80267687 80267913 -64014576 + L2 LINE L2 2441 2668 -646 295 238 31 11 chr12 80267978 80268112 -64014377 + MER5A DNA MER1_type 10 189 0 1246 227 84 22 chr12 80268161 80268354 -64014135 + MER58B DNA MER1_type 1 223 -2197 8308 123 9 8 chr12 80268354 80269202 -64013287 + HSMAR2 DNA Mariner 2 853 -449 2330 102 3 0 chr12 80269202 80269506 -64012983 - AluSp SINE Alu -8 305 1 8308 123 9 8 chr12 80269506 80269956 -64012533 + HSMAR2 DNA Mariner 853 1301 -1 1246 227 84 22 chr12 80269956 80270083 -64012406 + MER58B DNA MER1_type 223 341 0 534 168 0 0 chr12 80270124 80270231 -64012258 + L1MA4 LINE L1 6191 6297 -3 604 334 56 52 chr12 80271112 80271757 -64010732 - L2 LINE L2 -37 3235 2549 264 366 16 24 chr12 80271763 80271886 -64010603 + MER91A DNA MER1_type 2 123 -73 1130 143 48 14 chr12 80272257 80272466 -64010023 - L1MD1 LINE L1 0 6242 6027 1508 167 13 71 chr12 80272470 80272842 -64009647 - MER4A LTR ERV1 0 664 256 387 146 101 0 chr12 80272837 80272926 -64009563 - MER4A LTR ERV1 -566 98 1 * 2309 157 41 39 chr12 80272926 80273040 -64009449 - L1MD1 LINE L1 -267 5975 5863 2484 60 13 0 chr12 80273040 80273339 -64009150 + AluSp SINE Alu 3 305 -8 2309 157 41 39 chr12 80273339 80273716 -64008773 - L1MD1 LINE L1 -379 5863 5483 2966 132 30 113 chr12 80273716 80274286 -64008203 + LTR8 LTR ERV1 1 496 -195 7306 47 1 0 chr12 80274286 80275298 -64007191 + L1PA5 LINE L1 5140 6152 -2 2966 132 30 113 chr12 80275298 80275480 -64007009 + LTR8 LTR ERV1 496 691 0 25 0 0 0 chr12 80275482 80275507 -64006982 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr12 80275531 80275556 -64006933 + AT_rich Low_complexity Low_complexity 1 25 0 833 144 25 11 chr12 80275556 80275739 -64006750 - L1MD1 LINE L1 -919 5440 5263 241 296 92 78 chr12 80275838 80275980 -64006509 + MIR SINE MIR 119 262 0 868 80 7 29 chr12 80276224 80276362 -64006127 + L1PA14 LINE L1 6026 6160 -1 379 364 62 0 chr12 80277163 80277325 -64005164 - L3 LINE CR1 -7 1570 1399 246 266 84 7 chr12 80277340 80277483 -64005006 + L1ME4a LINE L1 5965 6118 -3 21 0 0 0 chr12 80277876 80277897 -64004592 + AT_rich Low_complexity Low_complexity 1 21 0 182 330 45 11 chr12 80278252 80278340 -64004149 - MIR SINE MIR -123 139 49 304 313 94 0 chr12 80278745 80278873 -64003616 - L3 LINE CR1 -1074 503 364 308 326 137 6 chr12 80278890 80279065 -64003424 - MLT1K LTR MaLR -77 511 314 303 286 166 46 chr12 80279149 80279366 -64003123 + MIR SINE MIR 2 244 -18 2103 122 7 0 chr12 80279546 80279840 -64002649 + AluSg SINE Alu 1 296 -14 342 0 0 0 chr12 80281107 80281145 -64001344 + (CA)n Simple_repeat Simple_repeat 2 39 0 207 280 0 0 chr12 80281293 80281343 -64001146 - L2 LINE L2 0 3313 3264 454 325 35 12 chr12 80281426 80281595 -64000894 - MIR SINE MIR -77 185 13 207 0 0 0 chr12 80282496 80282519 -63999970 + (TA)n Simple_repeat Simple_repeat 1 23 0 282 288 110 0 chr12 80282594 80282712 -63999777 - MLT1J LTR MaLR -7 504 374 482 226 30 0 chr12 80283242 80283375 -63999114 + L1ME3A LINE L1 5826 5962 -208 2316 88 0 19 chr12 80283944 80284261 -63998228 + AluY SINE Alu 1 311 0 23 33 0 0 chr12 80284456 80284486 -63998003 + AT_rich Low_complexity Low_complexity 1 30 0 261 217 112 49 chr12 80284492 80284635 -63997854 + L1ME4a LINE L1 5863 6014 -107 592 300 97 4 chr12 80285178 80285415 -63997074 + MIR SINE MIR 3 261 -1 189 0 0 0 chr12 80286130 80286151 -63996338 + (T)n Simple_repeat Simple_repeat 1 21 0 380 327 26 18 chr12 80287421 80287534 -63994955 + L2 LINE L2 3157 3270 -2 31 0 0 0 chr12 80287586 80287617 -63994872 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr12 80289113 80289141 -63993348 + AT_rich Low_complexity Low_complexity 1 28 0 1351 110 0 0 chr12 80289320 80289493 -63992996 - AluSx SINE Alu -139 173 1 206 306 81 0 chr12 80290962 80291024 -63991465 - L2 LINE L2 -18 3254 3188 397 295 52 67 chr12 80291808 80292076 -63990413 - L2 LINE L2 -183 3089 2826 299 263 13 0 chr12 80292280 80292356 -63990133 + MER5A DNA MER1_type 63 139 -50 234 241 66 109 chr12 80292897 80293034 -63989455 + MER5A DNA MER1_type 4 134 -55 2125 108 30 17 chr12 80293035 80293355 -63989134 - AluSx SINE Alu 0 312 1 634 295 102 41 chr12 80293496 80293988 -63988501 + MER34 LTR ERV1 1 522 -20 1995 100 0 63 chr12 80295548 80295885 -63986604 + AluSg SINE Alu 1 318 0 1781 175 7 16 chr12 80296220 80296529 -63985960 + AluJb SINE Alu 1 306 -6 1990 146 7 3 chr12 80296712 80297007 -63985482 - AluSq SINE Alu -17 296 1 355 293 98 58 chr12 80297248 80297422 -63985067 - MIR3 SINE MIR -7 201 21 302 256 61 156 chr12 80297428 80297574 -63984915 - L2 LINE L2 -10 3303 3145 2310 89 0 3 chr12 80297574 80297877 -63984612 - AluY SINE Alu -9 302 1 302 256 61 156 chr12 80297877 80298089 -63984400 - L2 LINE L2 -168 3145 2979 584 234 60 34 chr12 80298094 80298178 -63984311 - MER34B LTR ERV1 -3 562 482 2146 126 0 3 chr12 80298178 80298479 -63984010 + AluSq SINE Alu 1 300 -13 584 234 60 34 chr12 80298479 80298629 -63983860 - MER34B LTR ERV1 -83 482 322 307 304 47 58 chr12 80298787 80298958 -63983531 + MIR SINE MIR 83 251 -11 1884 138 0 48 chr12 80299743 80300055 -63982434 + AluSg SINE Alu 1 297 -13 327 220 60 53 chr12 80300055 80300205 -63982284 - MER34B LTR ERV1 -93 472 322 * 550 251 22 17 chr12 80300196 80300525 -63981964 - MER34 LTR ERV1 -201 364 1 993 289 84 7 chr12 80300528 80300933 -63981556 - L2 LINE L2 -373 2941 2506 498 339 80 22 chr12 80301200 80301424 -63981065 + MIR SINE MIR 23 259 -3 1558 156 61 37 chr12 80302161 80302456 -63980033 - AluJo SINE Alu -9 303 2 757 261 94 4 chr12 80302872 80303106 -63979383 - MIR SINE MIR 0 262 8 1123 141 6 41 chr12 80303106 80303332 -63979157 - MER20 DNA MER1_type -1 218 1 285 326 29 69 chr12 80304393 80304568 -63977921 + MIR3 SINE MIR 34 201 -7 337 277 22 58 chr12 80304582 80304719 -63977770 - MIR SINE MIR -5 257 126 212 310 0 0 chr12 80304844 80304902 -63977587 + L2 LINE L2 3248 3305 -8 22 0 0 0 chr12 80305109 80305131 -63977358 + AT_rich Low_complexity Low_complexity 1 22 0 1760 119 56 7 chr12 80305657 80305926 -63976563 + AluSg SINE Alu 1 282 -28 240 35 0 0 chr12 80305929 80305958 -63976531 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2258 112 0 7 chr12 80305960 80306265 -63976224 + AluSq SINE Alu 1 303 -10 25 0 0 0 chr12 80306318 80306343 -63976146 + AT_rich Low_complexity Low_complexity 1 25 0 620 304 101 46 chr12 80306891 80307197 -63975292 - L2 LINE L2 0 3272 2950 3507 185 12 22 chr12 80309366 80310092 -63972397 + L1MB2 LINE L1 5449 6167 -4 240 250 0 43 chr12 80313318 80313410 -63969079 - MER112 DNA MER1_type -170 90 3 347 376 96 0 chr12 80314125 80314250 -63968239 + L2 LINE L2 3134 3270 -2 2143 124 3 34 chr12 80314430 80314752 -63967737 + AluSx SINE Alu 1 312 0 185 0 40 0 chr12 80315419 80315444 -63967045 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2189 112 7 0 chr12 80315451 80315737 -63966752 - AluSp SINE Alu -25 288 1 2315 102 75 0 chr12 80315782 80316143 -63966346 - L1PA11 LINE L1 -3 6171 5784 212 367 0 0 chr12 80316151 80316230 -63966259 - L2 LINE L2 -520 2794 2716 545 255 11 32 chr12 80317044 80317232 -63965257 - AluSx SINE Alu -128 184 1 497 259 34 8 chr12 80317536 80317670 -63964819 + MIR SINE MIR 15 150 -61 4506 123 13 26 chr12 80317671 80318425 -63964064 + Tigger2 DNA MER2_type 1 744 -1974 2484 65 0 0 chr12 80318457 80318763 -63963726 + AluY SINE Alu 1 306 -5 1168 167 45 4 chr12 80318807 80319052 -63963437 + Tigger2 DNA MER2_type 2461 2715 -3 384 243 58 10 chr12 80319054 80319157 -63963332 + MIR SINE MIR 155 262 0 2046 104 42 7 chr12 80320124 80320411 -63962078 + AluSq SINE Alu 1 297 -16 1313 229 16 27 chr12 80320574 80320941 -63961548 - L1ME1 LINE L1 -8 6158 5796 1991 106 73 4 chr12 80321118 80321392 -63961097 - AluSg SINE Alu -17 293 1 21 0 0 0 chr12 80321782 80321803 -63960686 + AT_rich Low_complexity Low_complexity 1 21 0 688 162 0 0 chr12 80321815 80321920 -63960569 - FRAM SINE Alu -24 152 48 751 236 75 0 chr12 80322538 80322739 -63959750 - MIR SINE MIR -25 237 19 1927 113 4 0 chr12 80322740 80323005 -63959484 - AluSx SINE Alu -10 302 37 1772 176 97 0 chr12 80323074 80323455 -63959034 - L1ME1 LINE L1 -447 5737 5320 335 275 33 0 chr12 80323476 80323596 -63958893 - L1ME1 LINE L1 -1351 4795 4672 7329 212 133 20 chr12 80323657 80326113 -63956376 - L1M4 LINE L1 -837 5807 3075 945 260 0 4 chr12 80326160 80326410 -63956079 - L1M4 LINE L1 -6289 253 5 343 330 27 54 chr12 80326529 80326714 -63955775 + MER5A DNA MER1_type 10 189 0 291 345 64 9 chr12 80327965 80328075 -63954414 + L2 LINE L2 3151 3266 -6 2244 112 3 0 chr12 80328394 80328690 -63953799 - AluSq SINE Alu -16 297 1 2081 87 6 6 chr12 80328722 80329034 -63953455 + L1P4 LINE L1 5404 5715 -459 2113 126 0 10 chr12 80329234 80329536 -63952953 - AluSx SINE Alu -13 299 1 2418 73 0 3 chr12 80330251 80330552 -63951937 + AluY SINE Alu 1 300 -11 1978 132 7 20 chr12 80330567 80330893 -63951596 + AluSx SINE Alu 1 312 0 374 306 69 46 chr12 80331935 80332108 -63950381 + MIR3 SINE MIR 27 203 -5 560 255 120 35 chr12 80332323 80332523 -63949966 + L2 LINE L2 3097 3313 0 4801 193 20 3 chr12 80334318 80335665 -63946824 - L1M2 LINE L1 -679 5633 4264 1879 223 77 27 chr12 80336072 80336592 -63945897 - MLT1E2 LTR MaLR -66 560 15 21 0 0 0 chr12 80336650 80336671 -63945818 + AT_rich Low_complexity Low_complexity 1 21 0 2427 95 10 51 chr12 80336725 80337116 -63945373 + THE1C LTR MaLR 1 375 0 263 294 34 47 chr12 80337182 80337316 -63945173 - MIR SINE MIR -62 146 52 455 258 226 0 chr12 80337549 80337704 -63944785 + MIR SINE MIR 24 213 -49 682 231 148 48 chr12 80338011 80338042 -63944447 + MIR SINE MIR 11 37 -225 458 229 37 0 chr12 80338042 80338129 -63944360 + MER81 DNA DNA 1 94 -20 204 0 83 0 chr12 80338129 80338165 -63944324 + A-rich Low_complexity Low_complexity 2 40 0 458 229 37 0 chr12 80338165 80338186 -63944303 + MER81 DNA DNA 94 113 -1 682 231 148 48 chr12 80338186 80338383 -63944106 + MIR SINE MIR 37 262 0 1340 265 57 26 chr12 80338698 80339192 -63943297 + L1MC4a LINE L1 5473 5989 -1819 866 213 6 6 chr12 80339192 80339366 -63943123 + FAM SINE Alu 1 174 -1 1340 265 57 26 chr12 80339366 80339448 -63943041 + L1MC4a LINE L1 5989 6067 -1741 2289 104 3 3 chr12 80339531 80339840 -63942649 + AluSx SINE Alu 1 309 -3 631 146 0 0 chr12 80339840 80339943 -63942546 + AluSg/x SINE Alu 210 312 0 488 176 0 29 chr12 80340034 80340136 -63942353 + FAM SINE Alu 87 185 0 352 189 90 36 chr12 80342691 80342802 -63939687 + Charlie8 DNA MER1_type 84 200 -2217 476 248 68 0 chr12 80343754 80343871 -63938618 - MIR3 SINE MIR -11 197 73 2128 219 78 27 chr12 80344516 80345429 -63937060 + L1MC4 LINE L1 6774 7808 -234 333 231 74 41 chr12 80345483 80345604 -63936885 + L1MC4 LINE L1 7918 8042 0 756 262 44 24 chr12 80345837 80346085 -63936404 + MLT1G1 LTR MaLR 1 253 -342 2191 82 13 43 chr12 80346118 80346422 -63936067 + AluSc SINE Alu 1 295 -14 656 284 73 17 chr12 80347490 80347722 -63934767 + MIR SINE MIR 18 262 0 238 294 126 56 chr12 80350955 80351098 -63931391 - MIR SINE MIR -12 250 98 313 416 0 0 chr12 80351206 80351331 -63931158 + MIR3 SINE MIR 54 178 -30 368 368 28 33 chr12 80352093 80352305 -63930184 + MIR SINE MIR 20 230 -32 406 298 37 48 chr12 80352319 80352507 -63929982 - MIR SINE MIR 0 262 77 744 347 95 43 chr12 80353288 80354577 -63927912 + L2 LINE L2 229 1585 -1729 2188 119 36 30 chr12 80354804 80355166 -63927323 - THE1B LTR MaLR 0 364 1 341 92 77 2 chr12 80356025 80356104 -63926385 - L1P LINE L1 -823 5323 5240 407 305 115 31 chr12 80356320 80356546 -63925943 - MIR SINE MIR 0 262 18 4586 185 3 13 chr12 80356704 80356729 -63925760 + L1P LINE L1 3929 3953 -2193 5848 106 29 0 chr12 80356729 80357727 -63924762 - L1PA13 LINE L1 -5 6158 5153 4586 185 3 13 chr12 80357727 80358690 -63923799 + L1P LINE L1 3953 4907 -1239 28 29 0 0 chr12 80359140 80359175 -63923314 + AT_rich Low_complexity Low_complexity 1 35 0 1767 163 7 14 chr12 80360440 80360735 -63921754 + AluJb SINE Alu 1 293 -19 28 29 0 0 chr12 80360735 80360770 -63921719 + AT_rich Low_complexity Low_complexity 1 35 0 463 147 168 77 chr12 80360791 80360934 -63921555 - MIR SINE MIR 0 262 107 273 57 0 0 chr12 80361225 80361260 -63921229 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 273 286 191 0 chr12 80361504 80361609 -63920880 + MIR SINE MIR 20 144 -118 252 321 12 0 chr12 80361791 80361872 -63920617 - MIR SINE MIR 0 262 181 1949 156 7 3 chr12 80362099 80362394 -63920095 + AluJb SINE Alu 1 296 -16 2246 118 0 0 chr12 80363036 80363340 -63919149 - AluSg SINE Alu -6 304 1 813 219 60 51 chr12 80363539 80363754 -63918735 + MER20 DNA MER1_type 3 219 0 26 50 0 0 chr12 80364554 80364594 -63917895 + AT_rich Low_complexity Low_complexity 1 40 0 369 275 145 7 chr12 80365257 80365395 -63917094 + MIR SINE MIR 1 157 -105 355 371 77 7 chr12 80365553 80365696 -63916793 - MIR3 SINE MIR -31 177 25 4447 160 47 3 chr12 80366403 80367167 -63915322 + L1MA8 LINE L1 5489 6286 -5 747 278 16 10 chr12 80367302 80367496 -63914993 + MLT1G LTR MaLR 10 204 -386 2288 135 45 33 chr12 80367507 80368051 -63914438 - L1PB3 LINE L1 -7 6147 5490 1872 73 0 13 chr12 80368051 80368283 -63914206 - AluY SINE Alu -10 301 73 1183 267 116 17 chr12 80368312 80368656 -63913833 + MLT1G LTR MaLR 195 572 -18 932 168 78 6 chr12 80368955 80369134 -63913355 + LTR47A LTR ERVL 261 452 0 243 168 218 69 chr12 80369243 80369344 -63913145 - MIR SINE MIR -58 204 89 212 250 60 70 chr12 80369474 80369574 -63912915 - L2 LINE L2 -7 3306 3208 289 279 143 88 chr12 80369873 80370280 -63912209 + L2 LINE L2 2779 3270 -2 301 338 72 55 chr12 80370682 80370972 -63911517 - L2 LINE L2 -2 3270 2976 420 282 216 0 chr12 80371105 80371286 -63911203 - MIR SINE MIR -30 232 13 323 279 57 33 chr12 80371326 80371448 -63911041 - L2 LINE L2 -465 2849 2725 198 263 42 32 chr12 80371825 80371920 -63910569 - L2 LINE L2 -1041 2273 2178 905 227 86 58 chr12 80372288 80372614 -63909875 - Charlie8 DNA MER1_type -2000 417 83 486 252 10 0 chr12 80373767 80373870 -63908619 - L2 LINE L2 0 3313 3210 1813 192 70 70 chr12 80374274 80374773 -63907716 - MLT1D LTR MaLR 0 505 7 332 292 5 11 chr12 80377454 80377558 -63904931 + MIR SINE MIR 59 145 -63 2599 147 16 0 chr12 80377789 80378171 -63904318 + MLT1B LTR MaLR 1 388 -2 1146 138 11 11 chr12 80378268 80378449 -63904040 - AluSp SINE Alu 0 313 133 285 146 0 0 chr12 80378638 80378686 -63903803 + (TC)n Simple_repeat Simple_repeat 2 49 0 336 257 144 48 chr12 80379397 80379584 -63902905 - MIR SINE MIR -42 220 16 196 262 28 47 chr12 80379630 80379737 -63902752 - MIR SINE MIR -27 235 131 194 271 0 0 chr12 80379825 80379884 -63902605 - MIR SINE MIR -110 152 94 967 188 11 11 chr12 80380611 80380797 -63901692 - MIR SINE MIR -30 232 47 2222 99 0 0 chr12 80382025 80382343 -63900146 + AluSp SINE Alu 1 318 0 410 322 85 15 chr12 80382344 80382543 -63899946 - MIR SINE MIR -3 259 47 1071 228 106 71 chr12 80383481 80384055 -63898434 - HAL1 LINE L1 -118 2389 1796 378 0 0 0 chr12 80384113 80384155 -63898334 + (TGG)n Simple_repeat Simple_repeat 2 43 0 237 180 0 0 chr12 80384876 80384926 -63897563 + (TA)n Simple_repeat Simple_repeat 1 50 0 809 193 7 0 chr12 80385103 80385253 -63897236 - L1ME3 LINE L1 0 6162 6012 298 276 237 0 chr12 80385360 80385512 -63896977 - MIR SINE MIR -6 256 69 248 54 0 0 chr12 80385531 80385568 -63896921 - AluJo SINE Alu 0 308 272 1353 149 5 19 chr12 80385570 80385784 -63896705 - AluJo SINE Alu -101 211 1 226 150 17 33 chr12 80385851 80385911 -63896578 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1422 133 0 0 chr12 80386047 80386243 -63896246 + AluJb SINE Alu 30 225 -87 312 236 214 0 chr12 80386553 80386642 -63895847 - MER81 DNA DNA -4 110 3 427 302 41 46 chr12 80387281 80387505 -63894984 + MIR SINE MIR 30 251 -11 1807 127 25 11 chr12 80388291 80388575 -63893914 + AluSx SINE Alu 1 288 -24 2074 125 0 7 chr12 80388744 80389039 -63893450 + AluSg SINE Alu 1 293 -17 22 35 0 0 chr12 80389058 80389087 -63893402 + AT_rich Low_complexity Low_complexity 1 29 0 2059 105 18 0 chr12 80389230 80389506 -63892983 - AluSg SINE Alu -29 281 1 378 305 30 15 chr12 80389515 80389646 -63892843 + MER5B DNA MER1_type 46 178 0 449 255 83 36 chr12 80390404 80390596 -63891893 + L2 LINE L2 3113 3313 0 270 306 0 0 chr12 80390702 80390774 -63891715 + L2 LINE L2 3242 3313 0 477 300 36 41 chr12 80391462 80391527 -63890962 - MIR SINE MIR 0 262 198 2677 163 45 33 chr12 80391527 80392036 -63890453 + MLT2B2 LTR ERVL 1 515 0 477 300 36 41 chr12 80392036 80392190 -63890299 - MIR SINE MIR -64 198 44 4203 172 77 36 chr12 80392875 80393754 -63888735 - MER21A LTR ERV1 -3 928 14 372 240 23 8 chr12 80393758 80393887 -63888602 + (TA)n Simple_repeat Simple_repeat 1 131 0 180 205 0 26 chr12 80394123 80394162 -63888327 - MER5B DNA MER1_type -129 49 12 1379 190 134 102 chr12 80394275 80394738 -63887751 + MLT2B1 LTR ERVL 5 487 -33 279 93 0 0 chr12 80394738 80394781 -63887708 + (CA)n Simple_repeat Simple_repeat 1 43 0 1379 190 134 102 chr12 80394781 80394817 -63887672 + MLT2B1 LTR ERVL 487 520 0 309 293 167 40 chr12 80394822 80395218 -63887271 + L2 LINE L2 759 1204 -2110 190 283 167 8 chr12 80395235 80395355 -63887134 + L2 LINE L2 2017 2155 -1159 985 210 10 10 chr12 80395440 80395640 -63886849 + MER8 DNA MER2_type 40 239 0 496 300 105 50 chr12 80395644 80395921 -63886568 + L2 LINE L2 2172 2463 -851 2310 82 14 0 chr12 80396061 80396354 -63886135 - AluSp SINE Alu -16 297 1 457 229 86 9 chr12 80396408 80396513 -63885976 - L2 LINE L2 -8 3305 3193 429 259 77 14 chr12 80396558 80396701 -63885788 + MIR SINE MIR 20 171 -91 337 235 35 0 chr12 80396831 80396916 -63885573 + MIR SINE MIR 158 245 -17 228 293 18 140 chr12 80396977 80397206 -63885283 + L2 LINE L2 2836 3036 -236 2241 118 0 3 chr12 80397211 80397517 -63884972 + AluSx SINE Alu 1 305 -7 237 212 91 15 chr12 80397521 80397587 -63884902 + L2 LINE L2 3015 3085 -187 406 309 23 55 chr12 80397736 80397956 -63884533 + MLT1K LTR MaLR 149 361 -227 2336 105 7 0 chr12 80398259 80398565 -63883924 - AluSx SINE Alu -4 308 1 253 116 47 0 chr12 80399460 80399503 -63882986 + L2 LINE L2 2290 2334 -980 21 0 0 0 chr12 80399525 80399546 -63882943 + AT_rich Low_complexity Low_complexity 1 21 0 1386 241 71 38 chr12 80399546 80399995 -63882494 + L2 LINE L2 2321 2784 -530 5287 136 45 29 chr12 80400011 80400899 -63881590 + MER4D LTR ERV1 2 903 0 486 296 75 75 chr12 80400921 80401319 -63881170 + L2 LINE L2 2900 3297 -16 964 144 8 0 chr12 80401453 80401585 -63880904 - FLAM_C SINE Alu 0 133 1 434 138 14 166 chr12 80402015 80402100 -63880389 - Charlie8 DNA MER1_type -170 171 115 2094 139 0 7 chr12 80402100 80402402 -63880087 - AluSq SINE Alu -13 300 1 434 138 14 166 chr12 80402402 80402461 -63880028 - Charlie8 DNA MER1_type -226 115 49 6044 160 10 8 chr12 80402595 80404608 -63877881 + L1PB1 LINE L1 4128 6149 -2 2697 95 138 10 chr12 80404789 80405201 -63877288 - MER4C LTR ERV1 0 465 1 231 379 53 0 chr12 80405424 80405519 -63876970 + L2 LINE L2 3143 3242 -30 24 32 0 0 chr12 80405718 80405749 -63876740 + AT_rich Low_complexity Low_complexity 1 31 0 217 308 142 17 chr12 80406764 80406884 -63875605 + MIR SINE MIR 6 140 -122 1097 244 84 77 chr12 80408756 80408981 -63873508 + MLT1I LTR MaLR 2 234 -175 1746 165 4 4 chr12 80408981 80409278 -63873211 - AluJo SINE Alu 0 305 9 1097 244 84 77 chr12 80409278 80409456 -63873033 + MLT1I LTR MaLR 234 409 0 199 284 0 62 chr12 80411005 80411086 -63871403 - L2 LINE L2 -4 3309 3234 1666 254 152 42 chr12 80411517 80412471 -63870018 + L2 LINE L2 2204 3280 -33 2176 112 7 0 chr12 80413684 80413978 -63868511 - AluSq SINE Alu -17 296 1 21 0 0 0 chr12 80413979 80414000 -63868489 + AT_rich Low_complexity Low_complexity 1 21 0 246 270 151 32 chr12 80414512 80414638 -63867851 + MIR3 SINE MIR 63 203 -5 2219 81 7 7 chr12 80415143 80415466 -63867023 - AluSq SINE Alu 0 323 1 2376 178 8 3 chr12 80415654 80416042 -63866447 + MLT1B LTR MaLR 1 390 0 220 143 0 24 chr12 80416623 80416665 -63865824 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 266 242 22 66 chr12 80416667 80416758 -63865731 - L2 LINE L2 0 3313 3227 533 292 65 11 chr12 80418943 80419128 -63863361 - MIR SINE MIR -58 204 10 337 290 11 0 chr12 80419900 80419993 -63862496 - L3b LINE CR1 -153 1430 1337 2107 132 0 0 chr12 80421167 80421462 -63861027 - AluSg SINE Alu -15 295 1 396 303 200 10 chr12 80421592 80421787 -63860702 + MIR SINE MIR 31 262 0 1671 181 6 16 chr12 80421993 80422307 -63860182 - AluJo SINE Alu -1 311 1 288 327 0 0 chr12 80422434 80422535 -63859954 + MIR SINE MIR 152 252 -10 1756 116 84 7 chr12 80422587 80422872 -63859617 - AluSx SINE Alu -5 307 1 253 116 47 0 chr12 80423767 80423810 -63858679 + L2 LINE L2 2290 2334 -980 21 0 0 0 chr12 80423832 80423853 -63858636 + AT_rich Low_complexity Low_complexity 1 21 0 1188 223 85 49 chr12 80423853 80424301 -63858188 + L2 LINE L2 2321 2784 -530 5254 138 45 29 chr12 80424317 80425205 -63857284 + MER4D LTR ERV1 2 903 0 486 296 75 75 chr12 80425227 80425625 -63856864 + L2 LINE L2 2900 3297 -16 964 144 8 0 chr12 80425759 80425891 -63856598 - FLAM_C SINE Alu 0 133 1 434 138 14 166 chr12 80426321 80426406 -63856083 - Charlie8 DNA MER1_type -170 160 104 2094 139 0 7 chr12 80426406 80426708 -63855781 - AluSq SINE Alu -13 300 1 434 138 14 166 chr12 80426708 80426767 -63855722 - Charlie8 DNA MER1_type -226 104 38 6019 161 10 8 chr12 80426901 80428914 -63853575 + L1PB1 LINE L1 4128 6149 -2 2697 95 138 10 chr12 80429095 80429507 -63852982 - MER4C LTR ERV1 0 465 1 231 379 53 0 chr12 80429730 80429825 -63852664 + L2 LINE L2 3143 3242 -30 24 32 0 0 chr12 80430024 80430055 -63852434 + AT_rich Low_complexity Low_complexity 1 31 0 205 324 7 21 chr12 80430411 80430556 -63851933 + (CCCCG)n Simple_repeat Simple_repeat 2 144 0 * 218 175 0 0 chr12 80430518 80430558 -63851931 + C-rich Low_complexity Low_complexity 1 40 0 201 259 91 112 chr12 80430924 80431067 -63851422 + L2 LINE L2 3161 3300 -13 493 264 113 13 chr12 80432052 80432211 -63850278 + MIR SINE MIR 5 179 -83 28 48 0 0 chr12 80432690 80432732 -63849757 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr12 80432793 80432822 -63849667 + AT_rich Low_complexity Low_complexity 1 29 0 996 172 90 52 chr12 80432865 80433098 -63849391 - MIR SINE MIR 0 262 21 1693 89 31 0 chr12 80433326 80433551 -63848938 + L1PA10 LINE L1 5932 6163 -5 239 324 56 0 chr12 80433912 80433983 -63848506 - L2 LINE L2 -16 3256 3182 2256 104 0 7 chr12 80435324 80435632 -63846857 + AluY SINE Alu 1 306 -5 230 280 167 15 chr12 80435719 80435851 -63846638 + MIR SINE MIR 1 152 -110 906 252 164 53 chr12 80435855 80436036 -63846453 + MLT1J LTR MaLR 1 161 -350 1481 173 0 0 chr12 80436036 80436267 -63846222 + AluJo SINE Alu 1 231 -81 906 252 164 53 chr12 80436267 80436518 -63845971 + MLT1J LTR MaLR 161 481 -30 2400 75 0 3 chr12 80436527 80436821 -63845668 - AluSq SINE Alu -20 293 1 212 162 27 0 chr12 80437780 80437817 -63844672 + (TG)n Simple_repeat Simple_repeat 1 38 0 363 245 7 21 chr12 80437819 80437962 -63844527 + C-rich Low_complexity Low_complexity 4 144 0 30 45 0 0 chr12 80438009 80438053 -63844436 + GC_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr12 80438290 80438311 -63844178 + GC_rich Low_complexity Low_complexity 1 21 0 436 180 22 29 chr12 80440449 80440588 -63841901 + G-rich Low_complexity Low_complexity 6 143 0 247 203 27 0 chr12 80440610 80440684 -63841805 + GA-rich Low_complexity Low_complexity 2 77 0 23 0 0 0 chr12 80440704 80440727 -63841762 + GC_rich Low_complexity Low_complexity 1 23 0 4602 77 23 59 chr12 80440727 80441510 -63840979 + SVA Other Other 440 1194 -192 2192 28 0 0 chr12 80441510 80441758 -63840731 + AluYa5 SINE Alu 45 292 -19 1872 175 15 6 chr12 80441760 80442086 -63840403 + L1PA16 LINE L1 5822 6150 -16 509 260 89 13 chr12 80442679 80442914 -63839575 + MER112 DNA MER1_type 1 253 -3 319 218 174 10 chr12 80443022 80443119 -63839370 - MIR SINE MIR -64 144 53 2659 45 0 0 chr12 80445124 80445434 -63837055 + AluY SINE Alu 1 310 -1 648 221 62 43 chr12 80445815 80446023 -63836466 - MIR SINE MIR -36 226 15 183 129 0 0 chr12 80446054 80446085 -63836404 + (TG)n Simple_repeat Simple_repeat 2 32 0 390 211 106 42 chr12 80447067 80447209 -63835280 - L1ME4a LINE L1 0 6121 5971 2343 101 3 0 chr12 80447497 80447805 -63834684 - AluSc SINE Alu 0 309 1 590 291 38 30 chr12 80447827 80448065 -63834424 - L1ME4a LINE L1 -394 5727 5485 2514 49 3 0 chr12 80448065 80448372 -63834117 - AluY SINE Alu -3 308 1 590 291 38 30 chr12 80448372 80448398 -63834091 - L1ME4a LINE L1 -636 5485 5461 250 314 83 16 chr12 80449029 80449150 -63833339 + MIR SINE MIR 15 143 -119 1824 176 17 0 chr12 80449157 80449458 -63833031 + AluJo SINE Alu 1 306 -6 859 222 54 0 chr12 80449465 80449632 -63832857 + AluJo SINE Alu 125 300 -12 418 282 29 57 chr12 80449714 80449923 -63832566 + L2 LINE L2 3053 3255 -58 1966 167 54 24 chr12 80449984 80450350 -63832139 - MLT1C LTR MaLR 0 467 91 1850 153 55 94 chr12 80450350 80450826 -63831663 + MSTB2 LTR MaLR 1 457 0 403 131 143 24 chr12 80450826 80450907 -63831582 - MLT1C LTR MaLR -376 91 1 183 182 0 0 chr12 80450913 80450946 -63831543 + L2 LINE L2 3257 3289 -24 245 325 149 9 chr12 80451169 80451283 -63831206 - MIR SINE MIR -60 148 19 249 225 14 0 chr12 80451389 80451460 -63831029 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 552 242 22 55 chr12 80451491 80451673 -63830816 - MER104 DNA MER2_type -4 176 1 255 221 206 0 chr12 80452443 80452511 -63829978 - L2 LINE L2 -6 3266 3185 349 282 69 30 chr12 80453966 80454097 -63828392 + MIR3 SINE MIR 3 138 -70 274 288 12 12 chr12 80454064 80454144 -63828345 + L2 LINE L2 3193 3272 0 * 302 288 63 27 chr12 80454182 80454293 -63828196 + L2 LINE L2 3150 3264 -8 1915 92 23 15 chr12 80454294 80454554 -63827935 + L1PA10 LINE L1 5907 6168 0 21 0 0 0 chr12 80454580 80454601 -63827888 + AT_rich Low_complexity Low_complexity 1 21 0 273 311 41 49 chr12 80454632 80454754 -63827735 + L2 LINE L2 3149 3269 -3 477 266 63 6 chr12 80455091 80455249 -63827240 - MLT1L LTR MaLR -26 589 423 1239 41 0 7 chr12 80455297 80455442 -63827047 + AluY SINE Alu 151 294 -17 654 310 24 5 chr12 80455485 80455698 -63826791 - MLT1L LTR MaLR -296 319 103 776 155 27 20 chr12 80455849 80455997 -63826492 + L1PA16 LINE L1 5681 5829 -337 1337 162 30 13 chr12 80455997 80456231 -63826258 + AluSc SINE Alu 67 304 -5 382 290 27 60 chr12 80456571 80456754 -63825735 - MLT1K LTR MaLR -263 325 149 237 212 91 15 chr12 80456903 80456969 -63825520 - L2 LINE L2 -187 3085 3015 2241 118 0 3 chr12 80456973 80457279 -63825210 - AluSx SINE Alu -7 305 1 207 289 22 140 chr12 80457284 80457512 -63824977 - L2 LINE L2 -236 3036 2836 337 235 35 0 chr12 80457573 80457658 -63824831 - MIR SINE MIR -17 245 158 429 259 77 14 chr12 80457788 80457931 -63824558 - MIR SINE MIR -91 171 20 457 229 86 9 chr12 80457976 80458081 -63824408 + L2 LINE L2 3193 3305 -8 2310 82 14 0 chr12 80458135 80458428 -63824061 + AluSp SINE Alu 1 297 -16 302 282 34 87 chr12 80458568 80458717 -63823772 - L2 LINE L2 -851 2463 2323 470 288 98 11 chr12 80459573 80459757 -63822732 + L2 LINE L2 3113 3312 -1 252 259 74 46 chr12 80459796 80459904 -63822585 + MIR SINE MIR 146 256 -6 351 0 0 0 chr12 80459909 80459948 -63822541 + (CA)n Simple_repeat Simple_repeat 2 40 0 6796 110 94 43 chr12 80459949 80460023 -63822466 + Tigger3b DNA MER2_type 2 71 -2957 1796 160 13 19 chr12 80460023 80460330 -63822159 + AluJo SINE Alu 1 305 -7 6796 110 94 43 chr12 80460330 80460461 -63822028 + Tigger3b DNA MER2_type 71 194 -2834 2129 134 3 0 chr12 80460461 80460753 -63821736 + AluSx SINE Alu 1 293 -19 6796 110 94 43 chr12 80460753 80461353 -63821136 + Tigger3b DNA MER2_type 194 762 -2266 191 88 29 0 chr12 80461353 80461387 -63821102 + (CTCA)n Simple_repeat Simple_repeat 4 38 0 6796 110 94 43 chr12 80461387 80461448 -63821041 + Tigger3b DNA MER2_type 762 818 -2210 2356 98 0 0 chr12 80461448 80461754 -63820735 - AluSg1 SINE Alu -3 306 1 6796 110 94 43 chr12 80461754 80462053 -63820436 + Tigger3b DNA MER2_type 818 1230 -1 2153 142 0 0 chr12 80462121 80462424 -63820065 + AluSx SINE Alu 1 303 -9 2070 154 57 22 chr12 80463134 80463536 -63818953 + MSTA LTR MaLR 1 416 -12 612 193 65 90 chr12 80463907 80464197 -63818292 - L1MC5 LINE L1 -38 7923 7641 5045 161 19 44 chr12 80464314 80465263 -63817226 - MER109 Unknown Unknown -1215 1217 293 2397 56 0 3 chr12 80465263 80465579 -63816910 - AluY SINE Alu 0 315 1 1387 133 0 5 chr12 80465582 80465777 -63816712 - AluSg/x SINE Alu -15 295 102 429 270 68 60 chr12 80465974 80466431 -63816058 + MER34 LTR ERV1 5 542 0 21 0 0 0 chr12 80466611 80466632 -63815857 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 80467109 80467132 -63815357 + AT_rich Low_complexity Low_complexity 1 23 0 1042 246 99 65 chr12 80467327 80467893 -63814596 + MER34C LTR ERV1 1 585 0 1030 165 0 0 chr12 80469619 80469783 -63812706 + AluJb SINE Alu 135 298 -14 1545 143 73 24 chr12 80469913 80470035 -63812454 + AluJo SINE Alu 1 116 -196 189 0 0 0 chr12 80470035 80470056 -63812433 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1545 143 73 24 chr12 80470056 80470220 -63812269 + AluJo SINE Alu 116 301 -11 3292 129 4 10 chr12 80470480 80470967 -63811522 - MER31A LTR ERV1 0 485 2 207 0 0 0 chr12 80471857 80471880 -63810609 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 460 273 77 41 chr12 80472649 80472843 -63809646 + MIR SINE MIR 2 202 -60 * 688 249 51 6 chr12 80472841 80473018 -63809471 + MIR SINE MIR 78 262 0 814 265 62 63 chr12 80473130 80473427 -63809062 - MLT1J1 LTR MaLR -3 508 150 2268 99 6 6 chr12 80473427 80473740 -63808749 - AluSq SINE Alu 0 313 1 814 265 62 63 chr12 80473740 80473887 -63808602 - MLT1J1 LTR MaLR -361 150 4 386 254 45 0 chr12 80474147 80474257 -63808232 - MIR SINE MIR -64 198 84 1706 152 123 3 chr12 80474419 80474729 -63807760 - MER7A DNA MER2_type -1 345 1 2374 91 0 0 chr12 80474815 80475112 -63807377 - AluSg SINE Alu -13 297 1 23 33 0 0 chr12 80475652 80475682 -63806807 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr12 80476572 80476601 -63805888 + AT_rich Low_complexity Low_complexity 1 29 0 2090 124 23 3 chr12 80476601 80476907 -63805582 - AluSx SINE Alu 0 312 1 621 163 18 151 chr12 80477030 80477101 -63805388 + MER58B DNA MER1_type 198 236 -2184 912 257 0 6 chr12 80477101 80477280 -63805209 + MER45A DNA AcHobo 1 178 0 621 163 18 151 chr12 80477280 80477374 -63805115 + MER58B DNA MER1_type 236 341 0 435 267 25 25 chr12 80477432 80477552 -63804937 - MER5A DNA MER1_type -28 161 42 15842 118 51 6 chr12 80477694 80479535 -63802954 + Tigger1 DNA MER2_type 1 1969 -449 2100 123 13 26 chr12 80479535 80479845 -63802644 + AluSx SINE Alu 1 306 -6 15842 118 51 6 chr12 80479845 80480317 -63802172 + Tigger1 DNA MER2_type 1969 2418 0 2155 128 0 7 chr12 80480491 80480796 -63801693 - AluSx SINE Alu -9 303 1 227 269 230 3 chr12 80480820 80480938 -63801551 + MIR SINE MIR 13 152 -65 2344 178 30 9 chr12 80480943 80481404 -63801085 + L1MD3 LINE L1 7517 7987 -8 208 274 167 0 chr12 80481464 80481548 -63800941 - MIR SINE MIR -20 242 145 705 56 0 0 chr12 80482153 80482242 -63800247 - L1MB2 LINE L1 -7 6164 6076 3188 198 103 27 chr12 80482290 80482464 -63800025 + L1ME1 LINE L1 5258 5417 -749 2289 113 0 3 chr12 80482464 80482774 -63799715 + AluSg SINE Alu 1 309 -1 3188 198 103 27 chr12 80482774 80483437 -63799052 + L1ME1 LINE L1 5417 6158 -8 1196 174 0 23 chr12 80483685 80483903 -63798586 + AluJo SINE Alu 86 298 -14 909 206 4 22 chr12 80485703 80485931 -63796558 - AluSq SINE Alu -8 305 82 5960 66 26 55 chr12 80486041 80486925 -63795564 + SVA Other Other 9 866 -520 1205 62 0 29 chr12 80486938 80487147 -63795342 + SVA Other Other 664 866 -520 4893 52 14 255 chr12 80487164 80488421 -63794068 + SVA Other Other 433 1385 -1 27 0 0 0 chr12 80488656 80488683 -63793806 + AT_rich Low_complexity Low_complexity 1 27 0 292 302 204 0 chr12 80488803 80488975 -63793514 - MIR SINE MIR -54 208 2 493 268 75 107 chr12 80490236 80490516 -63791973 - L2 LINE L2 -8 3264 2994 2346 81 20 3 chr12 80490889 80491187 -63791302 + AluSc SINE Alu 1 303 -6 2114 126 3 3 chr12 80491200 80491501 -63790988 + AluSx SINE Alu 1 301 -11 694 252 65 33 chr12 80491619 80491715 -63790774 - MIR SINE MIR 0 262 171 819 204 39 123 chr12 80491715 80491975 -63790514 - MER8 DNA MER2_type 0 239 2 694 252 65 33 chr12 80491975 80492092 -63790397 - MIR SINE MIR -91 171 42 1654 180 9 41 chr12 80492331 80492647 -63789842 + AluJo SINE Alu 1 306 -6 2153 112 3 0 chr12 80493546 80493831 -63788658 + AluSx SINE Alu 3 288 -24 2267 93 3 3 chr12 80494119 80494419 -63788070 - AluSq SINE Alu -13 300 1 1792 192 7 0 chr12 80494421 80494718 -63787771 - AluJb SINE Alu -13 299 1 1717 165 3 34 chr12 80495474 80495771 -63786718 - AluJb SINE Alu -12 300 13 1916 130 7 23 chr12 80496081 80496388 -63786101 - AluSx SINE Alu -10 302 1 1277 204 139 38 chr12 80496837 80497217 -63785272 - LTR37B LTR ERV1 -1 467 40 2424 101 0 0 chr12 80497217 80497524 -63784965 - AluSq SINE Alu -6 307 1 1277 204 139 38 chr12 80497524 80497560 -63784929 - LTR37B LTR ERV1 -428 40 9 264 273 45 0 chr12 80497996 80498084 -63784405 - L3b LINE CR1 -365 1218 1127 21 0 0 0 chr12 80498240 80498261 -63784228 + AT_rich Low_complexity Low_complexity 1 21 0 292 250 43 54 chr12 80499649 80499741 -63782748 - L2 LINE L2 -2 3311 3221 1694 195 10 0 chr12 80499915 80500212 -63782277 - AluJo SINE Alu 0 312 13 783 305 34 31 chr12 80500900 80501313 -63781176 - L1ME LINE L1 -339 5782 5369 1856 164 14 74 chr12 80501313 80501445 -63781044 + MER2 DNA MER2_type 1 139 -205 2186 125 0 0 chr12 80501445 80501749 -63780740 - AluSx SINE Alu -8 304 1 1856 164 14 74 chr12 80501749 80501761 -63780728 + MER2 DNA MER2_type 139 150 -194 2177 96 7 7 chr12 80501761 80502053 -63780436 - AluSg SINE Alu -18 292 1 1856 164 14 74 chr12 80502053 80502273 -63780216 + MER2 DNA MER2_type 150 344 0 433 158 13 13 chr12 80502652 80502728 -63779761 + AluJ/FLAM SINE Alu 4 79 -233 432 270 68 60 chr12 80502986 80503443 -63779046 + MER34 LTR ERV1 5 542 0 21 0 0 0 chr12 80503623 80503644 -63778845 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 80504121 80504144 -63778345 + AT_rich Low_complexity Low_complexity 1 23 0 1042 246 99 65 chr12 80504339 80504905 -63777584 + MER34C LTR ERV1 1 585 0 1030 165 0 0 chr12 80506632 80506796 -63775693 + AluJb SINE Alu 135 298 -14 2149 119 0 17 chr12 80506926 80507228 -63775261 + AluSg SINE Alu 1 297 -13 917 122 0 20 chr12 80507311 80507458 -63775031 + AluSg/x SINE Alu 157 300 -10 218 193 18 0 chr12 80508281 80508338 -63774151 + GA-rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr12 80508541 80508576 -63773913 + AT_rich Low_complexity Low_complexity 1 35 0 347 200 0 219 chr12 80509590 80509800 -63772689 + MIR3 SINE MIR 32 195 -13 248 316 26 0 chr12 80509969 80510045 -63772444 - L2 LINE L2 -1 3312 3235 3389 144 8 2 chr12 80510145 80510639 -63771850 - LOR1a LTR ERV1 0 497 1 705 158 105 26 chr12 80510734 80510886 -63771603 - L1MC1 LINE L1 0 6333 6170 1831 140 34 18 chr12 80511209 80511645 -63770844 + LTR45B LTR ERV1 3 515 -10 261 0 0 0 chr12 80511655 80511684 -63770805 + (CA)n Simple_repeat Simple_repeat 2 30 0 2232 128 0 0 chr12 80512845 80513150 -63769339 + AluSx SINE Alu 2 306 -6 2029 156 130 18 chr12 80513270 80513655 -63768834 - MSTA LTR MaLR 0 428 1 352 263 75 31 chr12 80513959 80514119 -63768370 + MIR3 SINE MIR 14 180 -28 2002 164 24 30 chr12 80514248 80514619 -63767870 + MSTB1 LTR MaLR 1 369 -63 1030 169 0 0 chr12 80514634 80514788 -63767701 - AluJb SINE Alu -26 286 133 405 103 15 15 chr12 80514788 80514856 -63767633 + MSTB1 LTR MaLR 363 430 -2 192 40 0 0 chr12 80516126 80516151 -63766338 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2063 113 17 14 chr12 80516153 80516444 -63766045 - AluSx SINE Alu -20 292 1 262 176 39 0 chr12 80516562 80516613 -63765876 - MER117 DNA MER1_type -17 180 128 215 324 37 15 chr12 80517381 80517517 -63764972 - MIR SINE MIR -6 256 118 371 256 110 73 chr12 80517582 80517687 -63764802 + Charlie8 DNA MER1_type 2 102 -239 2245 111 0 0 chr12 80517687 80517984 -63764505 + AluSg SINE Alu 1 297 -13 371 256 110 73 chr12 80517984 80518097 -63764392 + Charlie8 DNA MER1_type 102 228 -113 222 37 0 0 chr12 80518104 80518131 -63764358 + (CA)n Simple_repeat Simple_repeat 1 27 0 2204 125 3 0 chr12 80520019 80520330 -63762159 + AluSx SINE Alu 1 312 0 207 0 0 0 chr12 80520678 80520701 -63761788 + (A)n Simple_repeat Simple_repeat 1 23 0 2286 109 3 6 chr12 80521063 80521375 -63761114 + AluSx SINE Alu 1 311 -1 1730 164 0 0 chr12 80521673 80521941 -63760548 - AluJo SINE Alu -44 268 1 202 330 134 0 chr12 80521987 80522099 -63760390 + L2 LINE L2 3146 3272 0 186 173 365 0 chr12 80522711 80522763 -63759726 + MIR3 SINE MIR 127 197 -11 249 284 169 22 chr12 80522877 80523102 -63759387 - L2 LINE L2 -191 3081 2824 557 311 151 69 chr12 80523393 80524330 -63758159 - L2 LINE L2 -831 2483 1471 255 61 0 0 chr12 80524463 80524496 -63757993 + (CA)n Simple_repeat Simple_repeat 2 34 0 1100 244 98 12 chr12 80524502 80524920 -63757569 + L1MC5 LINE L1 7473 7926 -35 369 95 0 0 chr12 80525608 80525671 -63756818 + (TC)n Simple_repeat Simple_repeat 2 64 0 180 263 0 0 chr12 80525676 80525714 -63756775 + L2 LINE L2 3203 3240 -32 28 0 0 0 chr12 80525714 80525742 -63756747 + AT_rich Low_complexity Low_complexity 1 28 0 799 184 270 47 chr12 80525749 80525982 -63756507 - AluJo SINE Alu -17 285 1 2446 70 0 10 chr12 80526211 80526512 -63755977 - AluSg1 SINE Alu -11 298 1 412 250 0 22 chr12 80526962 80527054 -63755435 + C-rich Low_complexity Low_complexity 3 92 0 198 0 0 0 chr12 80527054 80527076 -63755413 + (A)n Simple_repeat Simple_repeat 1 22 0 270 108 0 0 chr12 80527112 80527149 -63755340 + (T)n Simple_repeat Simple_repeat 1 37 0 595 238 15 19 chr12 80527156 80527616 -63754873 + CT-rich Low_complexity Low_complexity 1 458 0 221 189 14 27 chr12 80527641 80527715 -63754774 + CT-rich Low_complexity Low_complexity 6 78 0 184 341 88 0 chr12 80527843 80527934 -63754555 + L2 LINE L2 3169 3267 -5 398 212 22 17 chr12 80528009 80528188 -63754301 + (CA)n Simple_repeat Simple_repeat 1 180 0 186 254 0 0 chr12 80528220 80528287 -63754202 + (CA)n Simple_repeat Simple_repeat 1 67 0 419 170 20 26 chr12 80528340 80528493 -63753996 + (CA)n Simple_repeat Simple_repeat 2 153 0 308 337 80 12 chr12 80529035 80529198 -63753291 - MIR SINE MIR -70 192 19 461 282 126 0 chr12 80529239 80529413 -63753076 + MIR SINE MIR 7 202 -60 740 178 16 0 chr12 80529414 80529543 -63752946 + FLAM_A SINE Alu 1 131 -2 1950 143 0 7 chr12 80529553 80529840 -63752649 + AluSx SINE Alu 28 312 0 215 261 171 76 chr12 80530960 80531171 -63751318 - MIR SINE MIR -30 232 2 1842 142 7 32 chr12 80533846 80534156 -63748333 + AluJo SINE Alu 1 302 -10 684 159 71 16 chr12 80534179 80534305 -63748184 - FLAM_C SINE Alu 0 133 1 26 30 0 0 chr12 80534355 80534388 -63748101 + AT_rich Low_complexity Low_complexity 1 33 0 381 270 79 37 chr12 80534966 80535155 -63747334 + MIR SINE MIR 20 216 -46 2255 94 10 10 chr12 80535637 80535945 -63746544 + AluSg SINE Alu 1 308 -2 1380 191 17 4 chr12 80535991 80536232 -63746257 + AluJo SINE Alu 11 254 -58 1161 75 0 32 chr12 80536247 80536433 -63746056 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 557 120 11 0 chr12 80536433 80536525 -63745964 + (GGAA)n Simple_repeat Simple_repeat 2 94 0 469 282 61 25 chr12 80536621 80536784 -63745705 - MIR SINE MIR -74 188 20 395 333 0 0 chr12 80536860 80536965 -63745524 - MIR SINE MIR -62 146 42 2618 49 0 7 chr12 80537405 80537713 -63744776 + AluY SINE Alu 1 306 -5 215 331 125 7 chr12 80537800 80537936 -63744553 + MIR SINE MIR 1 152 -110 912 251 161 53 chr12 80537940 80538122 -63744367 + MLT1J LTR MaLR 1 162 -349 1494 173 0 0 chr12 80538122 80538353 -63744136 + AluJo SINE Alu 1 231 -81 912 251 161 53 chr12 80538353 80538604 -63743885 + MLT1J LTR MaLR 162 481 -30 2421 75 0 3 chr12 80538613 80538907 -63743582 - AluSq SINE Alu -20 293 1 227 30 0 30 chr12 80539894 80539927 -63742562 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 2865 131 63 24 chr12 80540237 80540328 -63742161 + L1MB3 LINE L1 5529 5615 -568 2188 101 7 7 chr12 80540328 80540626 -63741863 + AluSx SINE Alu 1 298 -14 2865 131 63 24 chr12 80540626 80541075 -63741414 + L1MB3 LINE L1 5615 6090 -93 659 155 91 59 chr12 80541317 80541504 -63740985 - L1MD3 LINE L1 -844 7151 6959 1586 188 14 11 chr12 80541514 80541801 -63740688 - AluJo SINE Alu -24 288 1 332 326 71 0 chr12 80541842 80541983 -63740506 + MIR SINE MIR 102 252 -10 276 282 205 0 chr12 80542129 80542246 -63740243 + MIR3 SINE MIR 62 202 -6 190 266 78 0 chr12 80542628 80542692 -63739797 + L2 LINE L2 3221 3289 -24 1850 171 3 0 chr12 80542693 80542998 -63739491 - AluJo SINE Alu -6 306 1 289 288 12 82 chr12 80543196 80543366 -63739123 + MIR3 SINE MIR 8 165 -43 21 57 0 0 chr12 80545167 80545202 -63737287 + AT_rich Low_complexity Low_complexity 1 35 0 805 126 0 8 chr12 80545229 80545348 -63737141 - FLAM_C SINE Alu -15 118 1 270 298 69 8 chr12 80545540 80545671 -63736818 - MIR SINE MIR -78 184 46 519 267 61 11 chr12 80545841 80546021 -63736468 - MIR SINE MIR -1 261 73 1036 165 134 10 chr12 80546044 80546238 -63736251 - MER20 DNA MER1_type 0 219 2 693 245 111 87 chr12 80546353 80546777 -63735712 - LTR16A LTR ERVL -1 449 16 876 164 19 13 chr12 80546898 80547057 -63735432 + FRAM SINE Alu 3 162 -14 2132 111 10 7 chr12 80547059 80547348 -63735141 + AluSx SINE Alu 1 290 -22 1804 163 17 0 chr12 80547466 80547754 -63734735 + AluSx SINE Alu 1 293 -19 669 240 39 29 chr12 80547880 80548088 -63734401 - MIR SINE MIR -34 228 19 21 0 0 0 chr12 80550634 80550655 -63731834 + AT_rich Low_complexity Low_complexity 1 21 0 2391 98 0 0 chr12 80550815 80551120 -63731369 + AluSx SINE Alu 1 305 -7 306 218 69 23 chr12 80551505 80551592 -63730897 - L1MC4 LINE L1 -1339 6703 6613 27 73 0 0 chr12 80553117 80553172 -63729317 + AT_rich Low_complexity Low_complexity 1 55 0 363 294 0 0 chr12 80553910 80554036 -63728453 + G-rich Low_complexity Low_complexity 6 131 0 579 152 0 0 chr12 80554038 80554150 -63728339 + (CTGGGG)n Simple_repeat Simple_repeat 4 115 0 363 105 0 0 chr12 80554464 80554521 -63727968 + (CTG)n Simple_repeat Simple_repeat 2 58 0 1659 158 27 14 chr12 80557278 80557570 -63724919 + AluJo SINE Alu 1 296 -16 850 228 129 4 chr12 80557712 80557984 -63724505 + L2 LINE L2 1954 2259 -1055 254 267 67 42 chr12 80558350 80558470 -63724019 + L2 LINE L2 2334 2456 -858 318 242 42 27 chr12 80558471 80558650 -63723839 + MER115 DNA AcHobo 1 227 -466 822 257 208 10 chr12 80558688 80558991 -63723498 + MER115 DNA AcHobo 331 693 0 613 216 108 52 chr12 80559002 80559215 -63723274 + L2 LINE L2 2472 2696 -618 223 230 244 83 chr12 80559214 80559444 -63723045 + L2 LINE L2 2995 3261 -52 * 592 101 0 91 chr12 80560081 80560180 -63722309 + AluJ/FLAM SINE Alu 13 102 -210 392 316 116 5 chr12 80560203 80560393 -63722096 + MIR SINE MIR 42 252 -10 510 281 65 11 chr12 80560479 80560664 -63721825 - MIR SINE MIR -58 204 10 310 274 12 0 chr12 80561450 80561534 -63720955 - L3b LINE CR1 -162 1421 1337 2059 131 0 0 chr12 80562693 80563000 -63719489 - AluSg SINE Alu 0 307 1 405 303 200 10 chr12 80563130 80563325 -63719164 + MIR SINE MIR 31 262 0 1691 181 6 16 chr12 80563531 80563845 -63718644 - AluJo SINE Alu -1 311 1 291 327 0 0 chr12 80563972 80564073 -63718416 + MIR SINE MIR 152 252 -10 1842 109 78 7 chr12 80564125 80564409 -63718080 - AluSg1 SINE Alu -5 304 1 391 277 123 8 chr12 80564541 80564671 -63717818 + MIR SINE MIR 2 146 -116 393 75 0 0 chr12 80565070 80565123 -63717366 + (CA)n Simple_repeat Simple_repeat 2 54 0 579 313 44 6 chr12 80565537 80565719 -63716770 - MIR SINE MIR -38 224 36 246 313 39 70 chr12 80565739 80565867 -63716622 - L2 LINE L2 0 3272 3149 800 243 19 24 chr12 80568430 80568636 -63713853 - MIR SINE MIR 0 262 58 675 283 16 0 chr12 80568901 80569085 -63713404 - MIR SINE MIR -30 232 46 2457 79 3 0 chr12 80569383 80569688 -63712801 + AluY SINE Alu 1 306 -5 1874 158 0 3 chr12 80569820 80570117 -63712372 + AluJb SINE Alu 1 296 -16 501 231 209 0 chr12 80570117 80570251 -63712238 - MER5A DNA MER1_type -21 168 7 244 209 179 30 chr12 80570609 80570743 -63711746 + MER20B DNA MER1_type 21 174 -609 360 294 64 22 chr12 80570818 80571011 -63711478 + MIR3 SINE MIR 16 210 -52 243 345 117 21 chr12 80572157 80572302 -63710187 + L2 LINE L2 3075 3233 -39 240 338 0 14 chr12 80572934 80573005 -63709484 + MIR SINE MIR 28 97 -165 2112 132 52 19 chr12 80573145 80573508 -63708981 + THE1C LTR MaLR 1 375 0 843 188 36 30 chr12 80573535 80573700 -63708789 + FRAM SINE Alu 1 166 0 3042 184 95 30 chr12 80573723 80574548 -63707941 - L1MC4 LINE L1 -29 8013 6905 1594 188 14 11 chr12 80574558 80574845 -63707644 - AluJo SINE Alu -24 288 1 376 325 66 7 chr12 80574886 80575037 -63707452 + MIR SINE MIR 102 261 -1 320 282 205 0 chr12 80575173 80575290 -63707199 + MIR3 SINE MIR 62 202 -6 249 247 54 54 chr12 80575672 80575737 -63706752 + L2 LINE L2 3221 3288 -25 2650 46 0 0 chr12 80575737 80576042 -63706447 - AluY SINE Alu -6 305 1 249 247 54 54 chr12 80576042 80576069 -63706420 + L2 LINE L2 3287 3313 0 1936 141 0 0 chr12 80577036 80577305 -63705184 - AluSx SINE Alu -39 273 5 1393 163 122 11 chr12 80577346 80577616 -63704873 + AluJo SINE Alu 1 300 -12 350 336 115 23 chr12 80577763 80577980 -63704509 + MIR SINE MIR 20 256 -6 332 246 175 47 chr12 80578705 80578876 -63703613 + L1ME3A LINE L1 5963 6155 -15 2115 127 3 3 chr12 80579044 80579343 -63703146 - AluSx SINE Alu -13 299 1 200 86 29 0 chr12 80579447 80579482 -63703007 + (CA)n Simple_repeat Simple_repeat 2 37 0 898 112 8 30 chr12 80579489 80579623 -63702866 - FLAM_C SINE Alu 0 133 3 773 298 32 20 chr12 80581470 80581722 -63700767 - MIR SINE MIR -3 259 5 2211 96 7 0 chr12 80582602 80582894 -63699595 - AluY SINE Alu -17 294 1 428 297 203 10 chr12 80582941 80583133 -63699356 + MIR SINE MIR 18 246 -16 225 94 0 0 chr12 80583162 80583194 -63699295 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 225 0 0 0 chr12 80584004 80584029 -63698460 + (AGGGGG)n Simple_repeat Simple_repeat 2 26 0 873 162 7 7 chr12 80584383 80584519 -63697970 + AluJo SINE Alu 1 136 -176 1299 186 51 48 chr12 80584608 80584919 -63697570 - AluJb SINE Alu 0 312 1 1068 246 176 50 chr12 80585349 80585906 -63696583 + L2 LINE L2 2292 2918 -396 2150 123 3 0 chr12 80585906 80586207 -63696282 + AluSx SINE Alu 1 302 -10 1610 182 7 14 chr12 80586332 80586607 -63695882 + AluJo SINE Alu 14 286 -26 459 202 0 0 chr12 80586611 80586715 -63695774 + (TG)n Simple_repeat Simple_repeat 1 104 0 852 282 122 25 chr12 80586735 80587129 -63695360 + L2 LINE L2 2882 3313 0 559 295 23 0 chr12 80587986 80588159 -63694330 - MER5B DNA MER1_type -1 177 1 1208 187 32 22 chr12 80588894 80589210 -63693279 - MER33 DNA MER1_type 0 324 6 222 37 0 0 chr12 80589407 80589434 -63693055 + (TA)n Simple_repeat Simple_repeat 2 28 0 6571 58 14 2 chr12 80589434 80590738 -63691751 - L1PA7 LINE L1 -20 6134 4820 5123 89 14 11 chr12 80590738 80591299 -63691190 + L1P LINE L1 2628 3194 -2952 2230 102 3 0 chr12 80591299 80591627 -63690862 + AluSp SINE Alu 3 331 0 5123 89 14 11 chr12 80591627 80591872 -63690617 + L1P LINE L1 3194 3437 -2709 2294 124 0 3 chr12 80592839 80593145 -63689344 + AluSx SINE Alu 1 305 -7 1109 153 70 4 chr12 80593733 80593961 -63688528 - L1MB3 LINE L1 -3 6180 5938 1928 115 22 4 chr12 80594778 80595085 -63687404 + AluSx SINE Alu 1 312 0 187 233 198 12 chr12 80597676 80597762 -63684727 + MIR SINE MIR 53 154 -108 313 138 0 33 chr12 80598216 80598285 -63684204 + MLT1G1 LTR MaLR 475 594 -1 576 184 135 6 chr12 80598322 80598485 -63684004 + Tigger2a DNA MER2_type 2 185 -249 228 135 0 0 chr12 80598485 80598522 -63683967 + (CA)n Simple_repeat Simple_repeat 1 37 0 576 148 23 0 chr12 80598522 80598610 -63683879 - AluSg/x SINE Alu -31 278 189 1483 154 0 13 chr12 80598614 80598848 -63683641 - AluSx SINE Alu -81 231 1 681 185 197 0 chr12 80598873 80599051 -63683438 + Tigger2a DNA MER2_type 232 444 0 500 273 8 0 chr12 80599591 80599719 -63682770 + FLAM_C SINE Alu 7 135 -8 496 284 121 8 chr12 80600627 80600866 -63681623 + L1MC4a LINE L1 6552 6817 -991 1229 151 24 5 chr12 80601232 80601438 -63681051 + AluSx SINE Alu 1 210 -102 189 0 0 0 chr12 80601463 80601484 -63681005 + (A)n Simple_repeat Simple_repeat 1 21 0 1949 134 0 54 chr12 80601988 80602302 -63680187 + AluSx SINE Alu 1 297 -15 288 233 0 0 chr12 80602533 80602593 -63679896 - Tigger5 DNA MER2_type -30 2293 2234 260 200 40 0 chr12 80602600 80602650 -63679839 - Tigger5 DNA MER2_type -2271 52 1 23 0 0 0 chr12 80605355 80605378 -63677111 + AT_rich Low_complexity Low_complexity 1 23 0 1505 184 59 21 chr12 80608717 80609005 -63673484 + AluJo SINE Alu 1 299 -13 581 177 124 0 chr12 80609535 80609648 -63672841 - FLAM_A SINE Alu -6 127 1 2225 111 3 0 chr12 80609729 80610027 -63672462 + AluSx SINE Alu 13 311 -1 201 39 0 0 chr12 80610232 80610258 -63672231 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1885 166 0 0 chr12 80612109 80612399 -63670090 - AluSx SINE Alu -22 290 1 22 0 0 0 chr12 80613164 80613186 -63669303 + AT_rich Low_complexity Low_complexity 1 22 0 206 247 239 0 chr12 80614649 80614735 -63667754 + MIR SINE MIR 48 143 -65 1729 120 43 4 chr12 80614800 80615058 -63667431 + AluSx SINE Alu 1 268 -44 1271 208 39 7 chr12 80615093 80615372 -63667117 + AluJo SINE Alu 6 293 -19 291 54 0 0 chr12 80616262 80616299 -63666190 + (TA)n Simple_repeat Simple_repeat 2 38 0 2243 97 0 3 chr12 80616458 80616756 -63665733 - AluSg SINE Alu -13 297 1 378 283 68 45 chr12 80616983 80617248 -63665241 + L1ME LINE L1 5515 5785 -336 1705 188 3 10 chr12 80618881 80619174 -63663315 + AluJb SINE Alu 1 291 -21 2468 101 111 0 chr12 80619229 80619635 -63662854 - L1PA14 LINE L1 -1 6160 5710 509 317 128 12 chr12 80620916 80621159 -63661330 + HAL1 LINE L1 1388 1658 -849 1879 158 10 0 chr12 80621586 80621877 -63660612 + AluJb SINE Alu 1 294 -18 330 265 145 64 chr12 80621928 80621975 -63660514 + L1ME3A LINE L1 2254 2296 -3850 1037 209 180 8 chr12 80621975 80622219 -63660270 + AluJb SINE Alu 1 286 -16 330 265 145 64 chr12 80622219 80622420 -63660069 + L1ME3A LINE L1 2296 2522 -3624 236 225 141 0 chr12 80623161 80623232 -63659257 + L1ME3A LINE L1 3762 3842 -2304 735 284 179 61 chr12 80623384 80624168 -63658321 + L1ME3A LINE L1 4058 5019 -1127 447 68 0 0 chr12 80624168 80624227 -63658262 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 735 284 179 61 chr12 80624227 80624585 -63657904 + L1ME3A LINE L1 5019 5334 -812 393 330 108 45 chr12 80624609 80625073 -63657416 + L1ME3A LINE L1 5377 5869 -301 396 0 0 0 chr12 80626806 80626850 -63655639 + (CA)n Simple_repeat Simple_repeat 2 45 0 595 267 81 83 chr12 80627370 80627730 -63654759 + MLT1J LTR MaLR 36 394 -117 1745 151 53 14 chr12 80628193 80628478 -63654011 - AluSx SINE Alu -16 296 1 593 150 94 8 chr12 80628628 80628755 -63653734 + MER58A DNA MER1_type 6 143 0 1022 142 25 34 chr12 80628755 80628959 -63653530 + MER2 DNA MER2_type 1 202 -143 536 230 48 0 chr12 80628959 80629085 -63653404 + FLAM_C SINE Alu 1 132 -11 367 121 11 154 chr12 80629153 80629244 -63653245 + MER2 DNA MER2_type 268 345 0 308 222 0 37 chr12 80629244 80629323 -63653166 + MER58A DNA MER1_type 146 221 -3 1609 232 199 70 chr12 80629466 80631118 -63651371 + HAL1 LINE L1 13 1876 -631 23 54 0 0 chr12 80632331 80632368 -63650121 + AT_rich Low_complexity Low_complexity 1 37 0 571 170 0 128 chr12 80633248 80633389 -63649100 + FLAM_A SINE Alu 1 123 -10 258 182 0 36 chr12 80633894 80633949 -63648540 + L1ME LINE L1 5560 5612 -509 772 169 0 0 chr12 80633953 80634083 -63648406 + FLAM_C SINE Alu 2 131 -2 215 286 116 9 chr12 80634161 80634273 -63648216 + L2 LINE L2 2933 3056 -257 396 0 0 0 chr12 80634620 80634664 -63647825 + (TA)n Simple_repeat Simple_repeat 2 45 0 1186 144 65 5 chr12 80634797 80635012 -63647477 - Tigger3(Golem) DNA MER2_type 0 3029 2802 221 241 28 128 chr12 80635460 80635601 -63646888 + MER5A DNA MER1_type 61 187 -2 306 305 139 54 chr12 80635711 80635772 -63646717 + L1MEd LINE L1 4 58 -6061 2073 126 13 3 chr12 80635772 80636081 -63646408 + AluSx SINE Alu 1 312 0 306 305 139 54 chr12 80636081 80636350 -63646139 + L1MEd LINE L1 58 362 -5757 514 257 114 98 chr12 80636666 80637288 -63645201 + L1MEd LINE L1 904 1551 -4759 1384 148 113 0 chr12 80637291 80637520 -63644969 + AluJo SINE Alu 1 255 -57 1679 149 36 46 chr12 80637732 80638034 -63644455 - AluJb SINE Alu -13 299 1 1487 137 120 0 chr12 80638164 80638456 -63644033 + Tigger3(Golem) DNA MER2_type 10 336 -2693 1157 160 5 28 chr12 80638456 80638669 -63643820 + Tigger3(Golem) DNA MER2_type 2821 3028 -1 1975 161 74 27 chr12 80638779 80639184 -63643305 + MSTC LTR MaLR 1 424 -4 288 305 172 7 chr12 80639279 80639430 -63643059 + MIR SINE MIR 85 260 -2 569 228 24 0 chr12 80639504 80639627 -63642862 + FLAM_C SINE Alu 4 129 -4 910 50 328 50 chr12 80641425 80641605 -63640884 + MER30 DNA MER1_type 1 230 0 29 28 0 0 chr12 80643060 80643096 -63639393 + GC_rich Low_complexity Low_complexity 1 36 0 1721 167 156 7 chr12 80643588 80644038 -63638451 + Charlie1b DNA MER1_type 6 522 -1 367 300 133 8 chr12 80644860 80644980 -63637509 - L2 LINE L2 0 3313 3179 23 54 0 0 chr12 80644990 80645027 -63637462 + AT_rich Low_complexity Low_complexity 1 37 0 2136 113 0 7 chr12 80645129 80645431 -63637058 - AluSx SINE Alu -12 300 1 724 243 11 116 chr12 80645658 80645849 -63636640 + MIR SINE MIR 2 211 -51 853 129 8 23 chr12 80645849 80645981 -63636508 - FLAM_C SINE Alu -2 131 2 1882 151 11 3 chr12 80645989 80646274 -63636215 - AluSx SINE Alu -25 287 1 724 243 11 116 chr12 80646274 80646349 -63636140 + MIR SINE MIR 218 248 -14 321 299 57 19 chr12 80646709 80646866 -63635623 + MIR SINE MIR 84 246 -16 2281 88 3 10 chr12 80647130 80647427 -63635062 - AluSp SINE Alu -18 295 1 1736 148 72 0 chr12 80647427 80647703 -63634786 - AluJb SINE Alu -9 303 7 446 186 29 0 chr12 80647744 80647846 -63634643 - L1MD1 LINE L1 -6 6236 6132 664 205 43 0 chr12 80647846 80648007 -63634482 - L1MD2 LINE L1 -164 6195 6028 23 33 0 0 chr12 80648009 80648039 -63634450 + AT_rich Low_complexity Low_complexity 1 30 0 523 82 0 0 chr12 80648199 80648272 -63634217 + AluS SINE Alu 1 73 -240 1518 192 0 3 chr12 80749479 80749770 -63532719 + HERVH LTR ERV1 4860 5149 -2564 1171 167 19 0 chr12 80749771 80749987 -63532502 + HERVH LTR ERV1 5600 5819 -1894 2013 113 47 21 chr12 80749987 80750367 -63532122 + HERVH LTR ERV1 7324 7713 0 515 110 0 110 chr12 80750367 80750485 -63532004 + LTR7 LTR ERV1 1 105 -345 2165 53 10 7 chr12 80750518 80750821 -63531668 - LTR7 LTR ERV1 -2 448 145 7058 233 35 25 chr12 80750921 80751887 -63530602 - L1M2 LINE L1 -4916 1933 978 2235 142 17 8 chr12 80751887 80752246 -63530243 - THE1B LTR MaLR -2 362 1 7058 233 35 25 chr12 80752246 80753189 -63529300 - L1M2 LINE L1 -5871 978 6 4970 75 29 7 chr12 80753299 80754016 -63528473 - L1PA8A LINE L1 0 6131 5399 655 276 53 3 chr12 80754823 80755038 -63527451 + MIR SINE MIR 19 244 -18 234 0 0 0 chr12 80755380 80755406 -63527083 + (A)n Simple_repeat Simple_repeat 1 26 0 2040 84 77 7 chr12 80755575 80755862 -63526627 + AluY SINE Alu 1 307 -4 186 289 244 11 chr12 80756566 80756656 -63525833 - MER5A DNA MER1_type 0 189 79 241 266 25 0 chr12 80756736 80756815 -63525674 + (CAGA)n Simple_repeat Simple_repeat 1 81 0 539 264 241 24 chr12 80759025 80759366 -63523123 + MLT1J2 LTR MaLR 32 446 -4 231 189 0 0 chr12 80759521 80759574 -63522915 - MLT1K LTR MaLR -13 575 523 235 149 0 21 chr12 80759655 80759702 -63522787 + (TC)n Simple_repeat Simple_repeat 1 46 0 249 159 0 0 chr12 80759844 80759907 -63522582 + GA-rich Low_complexity Low_complexity 2 64 0 2228 121 3 0 chr12 80760157 80760464 -63522025 - AluSx SINE Alu -4 308 1 474 277 40 90 chr12 80760648 80760988 -63521501 - MLT1H1 LTR MaLR -237 302 2 247 115 16 49 chr12 80761062 80761123 -63521366 - MLT2B1 LTR ERVL 0 520 462 189 107 0 0 chr12 80761126 80761154 -63521335 + (CATATA)n Simple_repeat Simple_repeat 4 31 0 291 267 40 0 chr12 80761154 80761229 -63521260 - MLT2C2 LTR ERVL -40 424 347 2127 200 73 4 chr12 80761272 80761753 -63520736 + MER67D LTR ERV1 1 514 0 505 341 53 39 chr12 80761782 80762351 -63520138 - L1MEc LINE L1 -5701 695 119 21 0 0 0 chr12 80762434 80762455 -63520034 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 80762978 80762999 -63519490 + (A)n Simple_repeat Simple_repeat 1 21 0 469 171 0 0 chr12 80763065 80763147 -63519342 + MLT1E3 LTR MaLR 173 254 -400 14535 211 27 18 chr12 80763170 80769368 -63513121 - L1PA15 LINE L1 -8 7595 1422 1057 263 13 13 chr12 80769498 80769802 -63512687 + MLT1E3 LTR MaLR 319 622 -2 1686 186 6 3 chr12 80770086 80770413 -63512076 - MER47A DNA MER2_type 0 366 39 261 163 0 0 chr12 80770440 80770489 -63512000 + (TA)n Simple_repeat Simple_repeat 2 50 0 633 187 0 20 chr12 80770662 80770812 -63511677 - HERVH LTR ERV1 -1967 5746 5600 4041 142 5 1 chr12 80770813 80771473 -63511016 - HERVH LTR ERV1 -2564 5149 4488 3009 130 6 0 chr12 80771475 80771966 -63510523 - HERVH LTR ERV1 -3720 3993 3500 928 120 7 0 chr12 80771965 80772115 -63510374 - HERVH LTR ERV1 -4423 3290 3140 * 18436 99 7 42 chr12 80772094 80775196 -63507293 - HERVH LTR ERV1 -4718 2995 1 3401 71 0 7 chr12 80775198 80775649 -63506840 - LTR7 LTR ERV1 -2 448 1 379 364 57 40 chr12 80775762 80776341 -63506148 - HERVL LTR ERVL -1340 4314 3726 1850 173 73 11 chr12 80776945 80777327 -63505162 + MSTA LTR MaLR 23 428 0 255 246 0 0 chr12 80777573 80777634 -63504855 + L2 LINE L2 3244 3304 -9 425 279 17 90 chr12 80778414 80778647 -63503842 - MIR SINE MIR 0 262 47 480 296 56 55 chr12 80778813 80779177 -63503312 - L2 LINE L2 -174 3139 2773 510 286 16 0 chr12 80780580 80780706 -63501783 - L2 LINE L2 -522 2792 2665 992 149 0 0 chr12 80781532 80781700 -63500789 + L1PA15 LINE L1 5996 6163 -2 266 324 21 0 chr12 80781816 80781961 -63500528 - L1ME LINE L1 -357 5764 5617 684 300 28 12 chr12 80782068 80782318 -63500171 - MIR SINE MIR -2 260 7 1164 242 36 64 chr12 80783410 80784000 -63498489 + L1MC5 LINE L1 6871 7443 -518 27 49 0 0 chr12 80784029 80784070 -63498419 + AT_rich Low_complexity Low_complexity 1 41 0 327 270 16 40 chr12 80784220 80784346 -63498143 - L2 LINE L2 -72 3241 3119 328 321 0 0 chr12 80784489 80784601 -63497888 - MIR SINE MIR 0 262 151 21 0 0 0 chr12 80784621 80784642 -63497847 + AT_rich Low_complexity Low_complexity 1 21 0 356 343 48 33 chr12 80784733 80784988 -63497501 - L2 LINE L2 -256 3057 2676 321 313 58 98 chr12 80785769 80785886 -63496603 - MIR SINE MIR 0 262 157 2382 81 0 3 chr12 80785886 80786183 -63496306 - AluY SINE Alu -15 296 1 321 313 58 98 chr12 80786183 80786289 -63496200 - MIR SINE MIR -105 157 48 26 64 0 0 chr12 80786757 80786804 -63495685 + AT_rich Low_complexity Low_complexity 1 47 0 27 62 0 0 chr12 80787518 80787566 -63494923 + AT_rich Low_complexity Low_complexity 1 48 0 315 292 193 13 chr12 80788827 80788995 -63493494 + MIR SINE MIR 2 199 -63 2348 311 136 18 chr12 80789040 80790444 -63492045 - L2 LINE L2 -49 3264 1686 482 252 8 8 chr12 80790582 80790701 -63491788 + MER70A LTR ERVL 41 159 -313 * 1711 254 5 0 chr12 80790700 80791078 -63491411 + MER70A LTR ERVL 90 469 -3 228 315 193 25 chr12 80791326 80791564 -63490925 + L2 LINE L2 1913 2190 -1124 572 237 66 0 chr12 80791797 80791949 -63490540 + MSTC LTR MaLR 1 162 -212 635 208 21 0 chr12 80791973 80792117 -63490372 + MSTC LTR MaLR 282 428 0 726 289 153 6 chr12 80792118 80792478 -63490011 + L2 LINE L2 2214 2626 -688 571 319 65 55 chr12 80792737 80793104 -63489385 + L2 LINE L2 2562 2932 -382 1471 206 88 26 chr12 80793606 80794073 -63488416 - LTR54B LTR ERV1 -2 496 1 216 260 51 163 chr12 80794432 80794497 -63487992 - MIR SINE MIR -36 226 155 1329 178 68 71 chr12 80794497 80794806 -63487683 - AluJo SINE Alu -4 308 1 216 260 51 163 chr12 80794806 80794936 -63487553 - MIR SINE MIR -107 155 53 235 331 60 46 chr12 80796085 80796366 -63486123 + L2 LINE L2 1978 2262 -1052 188 415 0 8 chr12 80796407 80796525 -63485964 + L2 LINE L2 2377 2493 -821 4072 91 7 0 chr12 80796674 80797246 -63485243 - L1PB1 LINE L1 0 6151 5576 3505 169 4 0 chr12 80797246 80797950 -63484539 + L1 LINE L1 4039 4745 -1401 346 179 0 64 chr12 80797951 80798029 -63484460 - MER20 DNA MER1_type -146 73 1 444 327 28 44 chr12 80798490 80798741 -63483748 + L1MEd LINE L1 938 1184 -4935 2552 215 46 34 chr12 80798837 80799735 -63482754 - LTR48-int LTR ERV1 -296 6035 3814 1049 199 54 112 chr12 80799739 80800497 -63481992 - LTR48-int LTR ERV1 -2206 4125 1562 795 162 104 31 chr12 80800768 80801023 -63481466 - LTR48-int LTR ERV1 -2750 2121 1220 850 148 0 68 chr12 80801101 80801277 -63481212 - L1PA13 LINE L1 -3 6160 5997 819 169 91 70 chr12 80801327 80801569 -63480920 - LTR8A LTR ERV1 -16 711 465 1891 152 29 61 chr12 80801572 80801948 -63480541 - THE1B LTR MaLR 0 364 1 7239 125 2 0 chr12 80801948 80803018 -63479471 - THE1B-int LTR MaLR 0 1580 509 913 213 11 62 chr12 80803018 80803290 -63479199 - LTR8A LTR ERV1 -434 293 36 374 228 53 63 chr12 80803312 80803501 -63478988 - MERVL LTR ERVL -4400 943 757 * 630 126 55 104 chr12 80803331 80803513 -63478976 - LTR48-int LTR ERV1 -3356 2975 2803 263 167 0 0 chr12 80803729 80803777 -63478712 + MER54B LTR ERVL 746 793 0 359 154 31 0 chr12 80803777 80803842 -63478647 - MER31A LTR ERV1 -400 85 19 1541 168 28 4 chr12 80803869 80804119 -63478370 + AluJb SINE Alu 49 304 -8 1178 192 19 35 chr12 80804175 80804488 -63478001 - LTR48-int LTR ERV1 -4329 607 300 327 111 37 0 chr12 80804524 80804578 -63477911 - LTR48-int LTR ERV1 -4669 1662 1607 370 184 11 0 chr12 80805382 80805469 -63477020 - LTR48-int LTR ERV1 -4954 1377 1290 1457 207 30 111 chr12 80805773 80806517 -63475972 - LTR48-int LTR ERV1 -4488 1458 362 522 237 72 93 chr12 80806803 80807353 -63475136 - LTR48-int LTR ERV1 -4488 2070 15 737 204 88 59 chr12 80807368 80807931 -63474558 - LTR48 LTR ERV1 0 787 1 653 305 54 8 chr12 80808283 80808542 -63473947 - LTR16C LTR ERVL -27 464 194 442 303 75 56 chr12 80809151 80809471 -63473018 - MERVL LTR ERVL -498 4987 4662 1952 89 3 8 chr12 80809638 80809992 -63472497 + LTR7 LTR ERV1 1 441 -9 2880 104 4 26 chr12 80810001 80810470 -63472019 + HERVH LTR ERV1 1 459 -7254 13633 107 11 18 chr12 80810528 80812738 -63469751 + HERVH LTR ERV1 800 2995 -4718 5292 116 6 3 chr12 80812717 80813569 -63468920 + HERVH LTR ERV1 3140 3993 -3720 * 2798 131 0 5 chr12 80813571 80814013 -63468476 + HERVH LTR ERV1 4488 4927 -2786 1527 97 0 0 chr12 80814124 80814351 -63468138 + HERVH LTR ERV1 3767 3993 -3720 4100 143 0 3 chr12 80814353 80815017 -63467472 + HERVH LTR ERV1 4488 5149 -2564 1171 167 19 0 chr12 80815018 80815234 -63467255 + HERVH LTR ERV1 5600 5819 -1894 2232 93 48 13 chr12 80815234 80815611 -63466878 + HERVH LTR ERV1 7324 7713 0 515 110 0 110 chr12 80815611 80815729 -63466760 + LTR7 LTR ERV1 1 105 -345 315 0 0 0 chr12 80818926 80818961 -63463528 + (TAA)n Simple_repeat Simple_repeat 3 37 0 22 0 0 0 chr12 80819419 80819441 -63463048 + AT_rich Low_complexity Low_complexity 1 22 0 203 286 22 11 chr12 80820261 80820352 -63462137 + GA-rich Low_complexity Low_complexity 5 96 0 200 35 35 0 chr12 80821612 80821641 -63460848 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr12 80821869 80821904 -63460585 + AT_rich Low_complexity Low_complexity 1 35 0 2439 50 3 0 chr12 80823012 80823310 -63459179 + AluY SINE Alu 13 311 0 772 215 20 7 chr12 80824646 80824795 -63457694 - MER58B DNA MER1_type -3 338 188 2431 135 6 3 chr12 80825437 80825800 -63456689 + THE1B LTR MaLR 1 364 0 9262 132 41 30 chr12 80825800 80827360 -63455129 + THE1B-int LTR MaLR 1 1578 -2 2113 132 70 3 chr12 80827362 80827703 -63454786 + THE1B LTR MaLR 1 364 0 2214 85 0 50 chr12 80827708 80828027 -63454462 - AluY SINE Alu -8 303 1 265 349 59 24 chr12 80828128 80828297 -63454192 - HERV16 LTR ERVL -4092 904 730 727 323 49 43 chr12 80829262 80829296 -63453193 - LTR16C LTR ERVL -9 482 450 2128 121 10 3 chr12 80829296 80829601 -63452888 + AluSp SINE Alu 1 307 -6 727 323 49 43 chr12 80829601 80829891 -63452598 - LTR16C LTR ERVL -41 450 156 330 259 108 32 chr12 80830089 80830247 -63452242 - MLT1J1 LTR MaLR -29 417 248 304 127 0 17 chr12 80830298 80830338 -63452151 - MLT2A1 LTR ERVL 0 444 405 261 0 0 0 chr12 80830338 80830367 -63452122 + (TA)n Simple_repeat Simple_repeat 1 29 0 189 0 0 0 chr12 80830366 80830387 -63452102 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 304 127 0 17 chr12 80830367 80830403 -63452086 - MLT2A1 LTR ERVL -39 405 399 331 291 0 0 chr12 80830403 80830489 -63452000 + L1MC4 LINE L1 6617 6702 -1340 261 261 23 0 chr12 80830490 80830578 -63451911 - L1MC4 LINE L1 -1339 6703 6614 354 98 0 0 chr12 80830578 80830629 -63451860 + (TG)n Simple_repeat Simple_repeat 1 51 0 3109 82 12 2 chr12 80830629 80831033 -63451456 - MLT2A2 LTR ERVL -45 408 1 21 0 0 0 chr12 80831906 80831927 -63450562 + AT_rich Low_complexity Low_complexity 1 21 0 203 171 0 0 chr12 80832192 80832227 -63450262 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 228 35 0 0 chr12 80832667 80832696 -63449793 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 219 36 0 0 chr12 80833421 80833449 -63449040 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 204 273 242 40 chr12 80833855 80833954 -63448535 - L2 LINE L2 -13 3300 3182 1784 246 99 30 chr12 80834819 80835392 -63447097 - MLT1E2 LTR MaLR -10 616 4 221 200 109 18 chr12 80835973 80836028 -63446461 + L2 LINE L2 3201 3260 -12 781 282 59 31 chr12 80836164 80836419 -63446070 + MIR SINE MIR 1 262 0 681 66 0 0 chr12 80836648 80836739 -63445750 + (TG)n Simple_repeat Simple_repeat 2 92 0 373 280 45 8 chr12 80836784 80836916 -63445573 + MER69 DNA AcHobo 1 137 -1089 425 344 103 37 chr12 80837257 80837711 -63444778 + L2 LINE L2 2478 2961 -353 323 310 108 47 chr12 80839216 80839429 -63443060 - MIR SINE MIR 0 262 37 220 264 132 47 chr12 80839469 80839598 -63442891 - L3b LINE CR1 -166 1417 1278 30 27 0 0 chr12 80840420 80840457 -63442032 + AT_rich Low_complexity Low_complexity 1 37 0 323 293 78 9 chr12 80840923 80841039 -63441450 - L2 LINE L2 -23 3290 3167 758 260 39 27 chr12 80841258 80841516 -63440973 - MIR SINE MIR 0 262 2 684 269 92 24 chr12 80841687 80842049 -63440440 + MLT1G3 LTR MaLR 10 451 -116 22 0 0 0 chr12 80842076 80842098 -63440391 + AT_rich Low_complexity Low_complexity 1 22 0 2186 152 60 32 chr12 80842103 80842616 -63439873 - MLT2A2 LTR ERVL 0 554 2 246 193 0 0 chr12 80842621 80842677 -63439812 + MLT1G LTR MaLR 539 589 -1 257 304 54 0 chr12 80843169 80843281 -63439208 + MIR SINE MIR 125 242 -20 782 321 68 58 chr12 80843390 80843591 -63438898 + L2 LINE L2 2429 2627 -686 1643 207 52 18 chr12 80843591 80844035 -63438454 - MLT1C LTR MaLR -4 463 5 782 321 68 58 chr12 80844035 80844604 -63437885 + L2 LINE L2 2627 3202 -111 231 36 0 0 chr12 80844604 80844632 -63437857 + (CA)n Simple_repeat Simple_repeat 2 29 0 782 321 68 58 chr12 80844632 80844690 -63437799 + L2 LINE L2 3202 3258 -55 537 209 74 78 chr12 80844694 80844924 -63437565 + LTR37A LTR ERV1 119 347 -79 422 142 85 0 chr12 80845094 80845200 -63437289 - LTR37A LTR ERV1 0 426 312 235 353 35 24 chr12 80845592 80845762 -63436727 - L2 LINE L2 -520 2794 2623 416 301 135 6 chr12 80847424 80847587 -63434902 - MER5A DNA MER1_type 0 189 6 740 160 0 0 chr12 80848002 80848127 -63434362 - FLAM_A SINE Alu -5 137 13 1447 283 57 9 chr12 80848977 80849430 -63433059 + LTR26 LTR ERV1 1 475 -128 344 225 22 33 chr12 80849924 80850106 -63432383 + (TA)n Simple_repeat Simple_repeat 1 180 0 463 110 14 0 chr12 80851318 80851391 -63431098 + AluJ/FRAM SINE Alu 228 301 -11 301 109 0 0 chr12 80854259 80854305 -63428184 - L1PA8 LINE L1 -2 6170 6125 307 337 83 35 chr12 80854701 80854870 -63427619 + MER5B DNA MER1_type 1 177 -1 289 197 33 8 chr12 80855192 80855314 -63427175 + (TA)n Simple_repeat Simple_repeat 1 125 0 324 70 0 0 chr12 80855342 80855385 -63427104 + (CA)n Simple_repeat Simple_repeat 2 44 0 259 333 116 32 chr12 80857697 80857886 -63424603 + MIR SINE MIR 40 244 -18 23 33 0 0 chr12 80858341 80858371 -63424118 + AT_rich Low_complexity Low_complexity 1 30 0 196 301 14 14 chr12 80858998 80859071 -63423418 + L2 LINE L2 3191 3263 -9 21 0 0 0 chr12 80859353 80859374 -63423115 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 80859636 80859672 -63422817 + AT_rich Low_complexity Low_complexity 1 36 0 1758 167 17 13 chr12 80859952 80860251 -63422238 - AluJo SINE Alu -12 300 1 193 278 74 56 chr12 80860285 80860393 -63422096 + MIR SINE MIR 113 222 -40 26 30 0 0 chr12 80865012 80865045 -63417444 + AT_rich Low_complexity Low_complexity 1 33 0 3813 185 36 50 chr12 80865711 80866678 -63415811 + LTR13 LTR ERVK 1 954 0 343 248 31 23 chr12 80867985 80868114 -63414375 + GA-rich Low_complexity Low_complexity 5 134 0 200 35 35 0 chr12 80869370 80869399 -63413090 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr12 80869627 80869662 -63412827 + AT_rich Low_complexity Low_complexity 1 35 0 416 253 55 82 chr12 80870486 80870632 -63411857 + MIR3 SINE MIR 50 191 -17 240 385 69 47 chr12 80870804 80871121 -63411368 - L2 LINE L2 -62 3210 2887 1846 160 3 3 chr12 80871143 80871453 -63411036 + AluJb SINE Alu 1 310 0 264 346 167 39 chr12 80871554 80872147 -63410342 - L2 LINE L2 -565 2749 2081 23 68 0 0 chr12 80872933 80872977 -63409512 + AT_rich Low_complexity Low_complexity 1 44 0 32 67 0 0 chr12 80873147 80873207 -63409282 + AT_rich Low_complexity Low_complexity 1 60 0 33 80 0 0 chr12 80873763 80873838 -63408651 + AT_rich Low_complexity Low_complexity 1 75 0 22 0 0 0 chr12 80874341 80874363 -63408126 + AT_rich Low_complexity Low_complexity 1 22 0 11563 223 62 44 chr12 80876146 80877713 -63404776 - L1MB1 LINE L1 -178 5814 4278 901 130 0 29 chr12 80877713 80877851 -63404638 - AluJo SINE Alu -178 134 1 11563 223 62 44 chr12 80877851 80882495 -63399994 - L1MB1 LINE L1 -1714 4278 3 1273 234 39 21 chr12 80884307 80884644 -63397845 - MLT1A1 LTR MaLR 0 365 23 280 338 41 7 chr12 80885381 80885526 -63396963 + MIR3 SINE MIR 58 207 -1 23 0 0 0 chr12 80885667 80885690 -63396799 + AT_rich Low_complexity Low_complexity 1 23 0 722 46 0 0 chr12 80885768 80885855 -63396634 + L1PA3 LINE L1 2 88 -6058 42600 34 22 1 chr12 80886000 80892015 -63390474 + L1PA3 LINE L1 13 6151 -4 440 250 103 0 chr12 80892326 80892462 -63390027 + MIR SINE MIR 92 241 -21 31 92 0 0 chr12 80895408 80895495 -63386994 + AT_rich Low_complexity Low_complexity 1 87 0 794 252 73 28 chr12 80895967 80896378 -63386111 - MLT1C LTR MaLR 0 467 4 215 103 26 0 chr12 80896466 80896505 -63385984 + (TA)n Simple_repeat Simple_repeat 1 40 0 353 312 86 98 chr12 80898120 80898447 -63384042 + L2 LINE L2 2935 3257 -15 1127 214 30 30 chr12 80898565 80898831 -63383658 + AluJo SINE Alu 28 293 -19 246 400 61 0 chr12 80899274 80899389 -63383100 - MIR3 SINE MIR -21 187 66 257 315 76 0 chr12 80900194 80900286 -63382203 - MIR SINE MIR -49 213 115 180 311 219 25 chr12 80900258 80900366 -63382123 - MIR3 SINE MIR -65 143 9 * 856 231 39 0 chr12 80900366 80900548 -63381941 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr12 80900631 80900652 -63381837 + AT_rich Low_complexity Low_complexity 1 21 0 290 315 208 17 chr12 80900725 80900903 -63381586 + MIR SINE MIR 35 246 -16 211 377 86 38 chr12 80901549 80902074 -63380415 - L3 LINE CR1 -324 1253 704 207 191 0 0 chr12 80903229 80903271 -63379218 + A-rich Low_complexity Low_complexity 4 45 0 215 368 15 15 chr12 80903534 80903667 -63378822 + L3b LINE CR1 1219 1351 -232 21 0 0 0 chr12 80904520 80904541 -63377948 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 80905556 80905578 -63376911 + AT_rich Low_complexity Low_complexity 1 22 0 1117 139 4 101 chr12 80905983 80906221 -63376268 - AluJb SINE Alu -17 295 81 1380 218 66 17 chr12 80908542 80908890 -63373599 + MLT1A1 LTR MaLR 1 365 0 32 75 0 0 chr12 80910161 80910228 -63372261 + AT_rich Low_complexity Low_complexity 1 67 0 645 251 166 26 chr12 80910422 80910693 -63371796 + MLT1J1 LTR MaLR 3 311 -135 255 61 0 0 chr12 80912189 80912222 -63370267 + (TA)n Simple_repeat Simple_repeat 2 34 0 1996 178 69 10 chr12 80912292 80912696 -63369793 + MSTA LTR MaLR 1 428 0 257 246 0 0 chr12 80912942 80913003 -63369486 + L2 LINE L2 3244 3304 -9 443 279 17 90 chr12 80913783 80914016 -63368473 - MIR SINE MIR 0 262 47 455 296 56 55 chr12 80914182 80914546 -63367943 - L2 LINE L2 -174 3139 2773 497 286 16 0 chr12 80915949 80916075 -63366414 - L2 LINE L2 -522 2792 2665 1000 149 0 0 chr12 80916901 80917069 -63365420 + L1PA15 LINE L1 5996 6163 -2 315 324 21 0 chr12 80917185 80917330 -63365159 - L1ME LINE L1 -357 5764 5617 675 300 28 12 chr12 80917437 80917687 -63364802 - MIR SINE MIR -2 260 7 2044 249 63 55 chr12 80918779 80919814 -63362675 + L1MC5 LINE L1 6871 7913 -48 257 309 24 24 chr12 80919842 80919926 -63362563 + L2 LINE L2 3183 3266 -6 236 271 71 0 chr12 80919953 80920023 -63362466 + MIR SINE MIR 117 191 -71 473 290 50 15 chr12 80922320 80922520 -63359969 - HAL1b LINE L1 -458 890 684 311 271 172 59 chr12 80922541 80922744 -63359745 - HAL1b LINE L1 -878 470 245 2291 54 0 0 chr12 80922752 80923078 -63359411 - AluY SINE Alu 0 326 1 7273 153 30 16 chr12 80924595 80925871 -63356618 - Tigger1 DNA MER2_type -11 2407 1114 5501 169 21 23 chr12 80925872 80927803 -63354686 + L1PA16 LINE L1 4248 6166 0 21 0 0 0 chr12 80928682 80928703 -63353786 + AT_rich Low_complexity Low_complexity 1 21 0 323 325 48 0 chr12 80928703 80928829 -63353660 - L1MC4 LINE L1 -1297 6745 6614 2100 128 0 0 chr12 80928840 80929136 -63353353 - AluSx SINE Alu -16 296 1 557 295 72 21 chr12 80930666 80930903 -63351586 - MIR SINE MIR -1 261 13 23 0 0 0 chr12 80930907 80930930 -63351559 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 80930935 80930956 -63351533 + AT_rich Low_complexity Low_complexity 1 21 0 310 331 90 6 chr12 80931042 80931208 -63351281 + L1ME LINE L1 5521 5700 -421 4865 31 2 0 chr12 80931248 80931822 -63350667 - L1PA3 LINE L1 -4 6151 5577 24 0 0 0 chr12 80931995 80932019 -63350470 + AT_rich Low_complexity Low_complexity 1 24 0 998 90 8 0 chr12 80932019 80932153 -63350336 + AluSp SINE Alu 16 150 -163 6426 52 6 6 chr12 80932187 80933010 -63349479 + L1PA5 LINE L1 5332 6154 0 300 348 0 37 chr12 80933125 80933260 -63349229 + MIR SINE MIR 20 149 -113 1152 289 72 50 chr12 80933308 80933510 -63348979 + L1ME LINE L1 229 425 -5645 2336 96 0 6 chr12 80933510 80933823 -63348666 + AluSq SINE Alu 1 311 -2 1152 289 72 50 chr12 80933823 80934374 -63348115 + L1ME LINE L1 425 998 -5072 2891 274 97 30 chr12 80934378 80935244 -63347245 + L1ME LINE L1 1081 1888 -4192 2095 132 73 3 chr12 80935244 80935584 -63346905 + THE1B LTR MaLR 1 364 0 2891 274 97 30 chr12 80935584 80937020 -63345469 + L1ME LINE L1 1888 3496 -2584 1104 58 0 0 chr12 80937045 80937184 -63345305 + L1PA8 LINE L1 6033 6171 -1 382 215 39 39 chr12 80937193 80937323 -63345166 + L1M1 LINE L1 5353 5482 -820 2299 130 36 0 chr12 80937415 80937777 -63344712 + THE1C LTR MaLR 1 375 0 1108 273 66 18 chr12 80937838 80938275 -63344214 + L2 LINE L2 2624 3085 -228 26 0 0 0 chr12 80938632 80938658 -63343831 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr12 80938884 80938919 -63343570 + AT_rich Low_complexity Low_complexity 1 35 0 228 117 33 17 chr12 80939039 80939099 -63343390 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 26 0 0 0 chr12 80941320 80941346 -63341143 + AT_rich Low_complexity Low_complexity 1 26 0 3245 145 29 19 chr12 80941637 80942251 -63340238 + L1MA8 LINE L1 5671 6290 -1 1195 40 13 7 chr12 80942447 80942599 -63339890 + AluY SINE Alu 156 308 -3 2509 66 0 0 chr12 80944396 80944700 -63337789 - AluY SINE Alu -5 306 3 228 122 0 0 chr12 80945043 80945084 -63337405 + (ATG)n Simple_repeat Simple_repeat 2 42 0 239 339 62 0 chr12 80945666 80945731 -63336758 + L2 LINE L2 3141 3209 -63 194 0 39 0 chr12 80945752 80945778 -63336711 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2064 134 3 0 chr12 80945782 80946081 -63336408 + AluSq SINE Alu 1 300 -13 501 251 36 31 chr12 80946322 80946517 -63335972 + L1ME LINE L1 4426 4621 -1459 399 335 128 31 chr12 80946537 80947020 -63335469 + L1ME LINE L1 4671 5200 -880 259 308 100 20 chr12 80947105 80947477 -63335012 + L1ME LINE L1 5276 5684 -414 523 306 37 37 chr12 80948147 80948392 -63334097 + MIR SINE MIR 18 262 0 675 298 97 21 chr12 80949045 80949283 -63333206 + MIR SINE MIR 2 257 -5 21 36 0 0 chr12 80950439 80950467 -63332022 + AT_rich Low_complexity Low_complexity 1 28 0 234 269 241 0 chr12 80952628 80952736 -63329753 - MIR SINE MIR -126 136 3 359 343 62 0 chr12 80952881 80953027 -63329462 + MIR3 SINE MIR 42 196 -12 24 0 0 0 chr12 80954124 80954148 -63328341 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 80954299 80954320 -63328169 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr12 80954504 80954548 -63327941 + (TG)n Simple_repeat Simple_repeat 2 45 0 335 274 91 38 chr12 80954550 80954738 -63327751 + MIR SINE MIR 17 211 -51 269 278 35 70 chr12 80955644 80955759 -63326730 + MER91C DNA MER1_type 20 130 -10 2321 98 7 0 chr12 80955917 80956224 -63326265 - AluSx SINE Alu -3 309 1 405 353 147 13 chr12 80957156 80957388 -63325101 + L3b LINE CR1 1257 1519 -64 27 29 0 0 chr12 80960179 80960213 -63322276 + AT_rich Low_complexity Low_complexity 1 34 0 2409 54 3 0 chr12 80961568 80961866 -63320623 + AluY SINE Alu 13 311 0 1550 191 0 19 chr12 80965668 80965977 -63316512 - AluJb SINE Alu -4 308 6 270 272 37 0 chr12 80966514 80966595 -63315894 - L2 LINE L2 -1 3271 3188 723 289 38 17 chr12 80967068 80967303 -63315186 + MIR SINE MIR 6 245 -17 317 269 67 0 chr12 80967442 80967546 -63314943 - MIR SINE MIR -41 221 111 484 356 66 70 chr12 80968017 80968458 -63314031 + L2 LINE L2 2807 3245 -27 262 45 45 0 chr12 80968459 80968503 -63313986 + (TC)n Simple_repeat Simple_repeat 1 46 0 195 42 0 0 chr12 80968538 80968562 -63313927 + (TG)n Simple_repeat Simple_repeat 1 24 0 243 330 135 22 chr12 80969201 80969386 -63313103 - MLT1L LTR MaLR -208 407 202 482 179 34 26 chr12 80970139 80970256 -63312233 + LTR67 LTR ERVL 432 549 -8 21 36 0 0 chr12 80970975 80971003 -63311486 + AT_rich Low_complexity Low_complexity 1 28 0 515 326 33 0 chr12 80972075 80972256 -63310233 + MIR SINE MIR 73 259 -3 2100 131 3 0 chr12 80972369 80972681 -63309808 + AluSq SINE Alu 1 313 0 237 159 0 0 chr12 80972685 80972729 -63309760 + GA-rich Low_complexity Low_complexity 3 46 0 984 331 203 15 chr12 80973085 80974079 -63308410 + L2 LINE L2 976 2156 -1158 687 316 92 48 chr12 80974079 80974921 -63307568 + L2 LINE L2 2445 3313 0 206 232 0 0 chr12 80976058 80976114 -63306375 + A-rich Low_complexity Low_complexity 2 57 0 334 313 18 18 chr12 80981050 80981162 -63301327 - MIR3 SINE MIR -1 207 96 22 56 0 0 chr12 80981574 80981610 -63300879 + AT_rich Low_complexity Low_complexity 1 36 0 218 211 0 0 chr12 80981720 80981758 -63300731 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 222 246 0 0 chr12 80981916 80981977 -63300512 + GA-rich Low_complexity Low_complexity 4 64 0 315 0 0 0 chr12 80982683 80982718 -63299771 + (TAA)n Simple_repeat Simple_repeat 3 37 0 22 0 0 0 chr12 80983176 80983198 -63299291 + AT_rich Low_complexity Low_complexity 1 22 0 729 321 27 1 chr12 80984675 80984921 -63297568 + MIR SINE MIR 9 257 -5 225 238 119 36 chr12 80988028 80988112 -63294377 + L2 LINE L2 3222 3312 -1 415 254 91 0 chr12 80988641 80988751 -63293738 + L2 LINE L2 3192 3311 -2 1537 139 88 86 chr12 80988891 80989265 -63293224 - THE1C LTR MaLR 0 375 1 318 370 14 14 chr12 80989352 80989490 -63292999 - MIR SINE MIR -108 154 17 875 284 132 14 chr12 80989875 80990230 -63292259 + LTR16B LTR ERVL 65 461 -3 217 238 48 0 chr12 80990917 80990980 -63291509 + GA-rich Low_complexity Low_complexity 3 68 0 185 333 58 0 chr12 80991003 80991072 -63291417 + L2 LINE L2 2408 2480 -834 210 261 72 45 chr12 80991321 80991432 -63291057 + MIR SINE MIR 146 259 -3 192 77 0 0 chr12 80991781 80991807 -63290682 + (TAA)n Simple_repeat Simple_repeat 1 26 0 220 292 21 31 chr12 80991815 80991911 -63290578 + MIR SINE MIR 168 262 0 1416 277 124 98 chr12 80992696 80993043 -63289446 + L1ME LINE L1 3060 3396 -2750 2104 120 0 7 chr12 80993043 80993342 -63289147 + AluSc SINE Alu 1 297 -12 1416 277 124 98 chr12 80993342 80995178 -63287311 + L1ME LINE L1 3396 5300 -846 493 300 28 18 chr12 80995188 80995471 -63287018 + L1ME LINE L1 5290 5575 -595 1101 294 45 8 chr12 80995508 80995865 -63286624 - L2 LINE L2 0 3313 2944 1094 314 126 32 chr12 80995958 80996771 -63285718 - L2 LINE L2 -1152 2162 1274 22 0 0 0 chr12 80997433 80997455 -63285034 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr12 80997530 80997579 -63284910 + AT_rich Low_complexity Low_complexity 1 49 0 1775 100 108 0 chr12 80997737 80997996 -63284493 + AluSg SINE Alu 7 293 -17 252 322 40 47 chr12 81000412 81000561 -63281928 + L3b LINE CR1 1176 1323 -260 204 40 0 0 chr12 81000857 81000882 -63281607 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 332 22 22 0 chr12 81000881 81000926 -63281563 + (CA)n Simple_repeat Simple_repeat 1 46 0 689 203 118 57 chr12 81004298 81004544 -63277945 + MIR SINE MIR 2 262 0 229 343 0 37 chr12 81005445 81005553 -63276936 + MIR SINE MIR 23 126 -136 42111 36 22 2 chr12 81005860 81011877 -63270612 + L1PA3 LINE L1 13 6151 -4 739 319 54 43 chr12 81011944 81012705 -63269784 - L1MEd LINE L1 -5052 1067 299 263 148 37 25 chr12 81013849 81013930 -63268559 + (TA)n Simple_repeat Simple_repeat 2 83 0 277 65 59 71 chr12 81013933 81014103 -63268386 + (TTATA)n Simple_repeat Simple_repeat 5 172 0 36 0 0 0 chr12 81014105 81014141 -63268348 + AT_rich Low_complexity Low_complexity 1 36 0 811 304 62 20 chr12 81015365 81015717 -63266772 - L3b LINE CR1 -114 1469 1103 266 246 167 32 chr12 81015959 81016085 -63266404 + MIR SINE MIR 51 193 -69 837 299 75 88 chr12 81016684 81017418 -63265071 - L2 LINE L2 -5 3308 2575 2134 105 130 28 chr12 81017418 81017780 -63264709 - MSTA LTR MaLR 0 428 30 8283 175 74 3 chr12 81017780 81019298 -63263191 - MSTA-int LTR MaLR -25 1626 1 2032 137 132 5 chr12 81019298 81019677 -63262812 - MSTA LTR MaLR 0 428 2 209 224 343 8 chr12 81019678 81019812 -63262677 - L2 LINE L2 -735 2579 2401 540 329 34 17 chr12 81019859 81020096 -63262393 + MIR SINE MIR 14 254 -8 1424 212 0 46 chr12 81020169 81020502 -63261987 - AluJo SINE Alu 0 312 1 299 324 0 0 chr12 81020971 81021079 -63261410 - L3 LINE CR1 -817 760 653 189 297 63 36 chr12 81021806 81021917 -63260572 + L2 LINE L2 2672 2785 -529 2243 99 7 0 chr12 81021919 81022213 -63260276 + AluSg SINE Alu 3 298 -12 246 322 0 35 chr12 81023052 81023139 -63259350 + L2 LINE L2 3186 3269 -3 447 305 0 60 chr12 81023181 81023381 -63259108 + MIR SINE MIR 75 262 0 4427 260 141 11 chr12 81023785 81025692 -63256797 + L1M4 LINE L1 2568 4722 -1424 2127 119 3 0 chr12 81025828 81026123 -63256366 + AluSx SINE Alu 1 296 -16 299 44 22 0 chr12 81027511 81027556 -63254933 + (CA)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chr12 81029192 81029214 -63253275 + AT_rich Low_complexity Low_complexity 1 22 0 2138 116 49 14 chr12 81029897 81030242 -63252247 + THE1B LTR MaLR 8 364 0 299 356 84 71 chr12 81030773 81031096 -63251393 - L2 LINE L2 0 3272 2946 234 0 0 0 chr12 81031431 81031457 -63251032 + (A)n Simple_repeat Simple_repeat 1 26 0 398 218 2 2 chr12 81032315 81032401 -63250088 + MIR SINE MIR 66 152 -56 446 391 46 23 chr12 81032419 81032813 -63249676 - L2 LINE L2 -4 3268 2866 203 423 66 0 chr12 81033416 81033553 -63248936 - L2 LINE L2 -8 3264 3119 23 33 0 0 chr12 81034467 81034497 -63247992 + AT_rich Low_complexity Low_complexity 1 30 0 4038 203 47 22 chr12 81035404 81035891 -63246598 - L1MA9 LINE L1 -38 7295 6822 207 0 0 0 chr12 81035891 81035914 -63246575 + (TG)n Simple_repeat Simple_repeat 2 24 0 4038 203 47 22 chr12 81035914 81037186 -63245303 - L1MA9 LINE L1 -511 6822 5497 * 7374 252 46 25 chr12 81037173 81041738 -63240751 - L1MA9 LINE L1 -2809 4358 10 220 368 75 19 chr12 81041951 81042057 -63240432 - L2 LINE L2 -21 3251 3140 25 31 0 0 chr12 81042530 81042562 -63239927 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr12 81042590 81042613 -63239876 + AT_rich Low_complexity Low_complexity 1 23 0 198 234 0 43 chr12 81043150 81043197 -63239292 - MIR SINE MIR -169 93 49 185 292 138 0 chr12 81045013 81045078 -63237411 + MIR SINE MIR 187 260 -2 6702 18 0 0 chr12 81046087 81046854 -63235635 + L1PA3 LINE L1 5386 6152 -3 30 93 0 0 chr12 81046854 81046940 -63235549 + AT_rich Low_complexity Low_complexity 1 86 0 192 40 0 0 chr12 81047571 81047596 -63234893 + (T)n Simple_repeat Simple_repeat 1 25 0 182 364 45 0 chr12 81049408 81049474 -63233015 - MIR3 SINE MIR -52 156 88 1990 131 0 0 chr12 81050323 81050614 -63231875 + AluSx SINE Alu 22 312 0 2711 206 32 22 chr12 81051832 81052430 -63230059 + L1MA10 LINE L1 5731 6334 0 230 245 9 47 chr12 81052429 81052535 -63229954 + L1MC4 LINE L1 6616 6717 -1325 * 23 0 0 0 chr12 81053012 81053035 -63229454 + AT_rich Low_complexity Low_complexity 1 23 0 871 288 68 38 chr12 81053692 81054057 -63228432 + L3 LINE CR1 1201 1576 -1 654 292 116 71 chr12 81054220 81054706 -63227783 - L2 LINE L2 -34 3279 2774 26 0 0 0 chr12 81054816 81054842 -63227647 + AT_rich Low_complexity Low_complexity 1 26 0 2320 89 3 6 chr12 81055341 81055654 -63226835 + AluSx SINE Alu 1 312 0 602 275 18 18 chr12 81057329 81057496 -63224993 + MIR3 SINE MIR 42 208 0 329 234 16 0 chr12 81057902 81057966 -63224523 - MIR SINE MIR -180 82 18 377 296 61 47 chr12 81057966 81058273 -63224216 + L1ME3A LINE L1 5591 5897 -273 2324 89 0 0 chr12 81058684 81058987 -63223502 - AluSg SINE Alu -7 303 1 1880 31 0 0 chr12 81059212 81059436 -63223053 + L1PA4 LINE L1 5929 6152 -3 656 299 123 43 chr12 81059477 81059915 -63222574 - L2 LINE L2 0 3313 2841 1671 229 71 25 chr12 81060816 81061296 -63221193 + L1ME1 LINE L1 5660 6161 -5 21 0 0 0 chr12 81061374 81061395 -63221094 + AT_rich Low_complexity Low_complexity 1 21 0 356 89 89 0 chr12 81061983 81062039 -63220450 + MLT1A1 LTR MaLR 1 61 -367 832 246 43 0 chr12 81062072 81062259 -63220230 + MLT1A1 LTR MaLR 171 365 0 180 357 82 20 chr12 81063868 81063966 -63218523 + L2 LINE L2 3169 3272 0 530 247 91 7 chr12 81064479 81064633 -63217856 + MIR SINE MIR 96 262 0 413 280 48 37 chr12 81065940 81066129 -63216360 - L2 LINE L2 -1 3312 3122 605 267 0 51 chr12 81066209 81066305 -63216184 + MIR SINE MIR 95 180 -82 1413 224 54 58 chr12 81066305 81066605 -63215884 + LTR40b LTR ERVL 1 300 -162 1756 170 17 0 chr12 81066605 81066899 -63215590 + AluJo SINE Alu 1 299 -13 1413 224 54 58 chr12 81066899 81067062 -63215427 + LTR40b LTR ERVL 300 462 0 605 267 0 51 chr12 81067062 81067141 -63215348 + MIR SINE MIR 180 261 -1 1420 200 124 62 chr12 81067146 81067597 -63214892 + MLT1D LTR MaLR 27 505 0 218 227 0 0 chr12 81067598 81067642 -63214847 + (TTA)n Simple_repeat Simple_repeat 2 45 0 206 391 130 10 chr12 81067646 81067838 -63214651 - L2 LINE L2 -189 3083 2869 511 308 85 31 chr12 81067848 81068166 -63214323 - L2 LINE L2 -955 2359 2025 441 0 0 0 chr12 81070345 81070394 -63212095 + (TG)n Simple_repeat Simple_repeat 2 50 0 340 229 33 26 chr12 81070397 81070550 -63211939 + (TA)n Simple_repeat Simple_repeat 1 154 0 21 0 0 0 chr12 81071114 81071135 -63211354 + AT_rich Low_complexity Low_complexity 1 21 0 551 305 149 0 chr12 81071695 81071849 -63210640 + MER5A DNA MER1_type 11 187 -2 241 266 26 35 chr12 81071889 81072002 -63210487 + Charlie7 DNA MER1_type 36 147 -2465 310 255 225 30 chr12 81072136 81072434 -63210055 + Charlie7 DNA MER1_type 329 684 -1928 513 187 11 0 chr12 81072542 81072633 -63209856 + L1MA8 LINE L1 1000 1091 -5772 * 5081 181 12 0 chr12 81072630 81073519 -63208970 - MSTA-int LTR MaLR -747 904 5 2405 165 39 0 chr12 81073523 81073935 -63208554 - MSTA LTR MaLR 0 428 1 6065 177 33 21 chr12 81073936 81074411 -63208078 + L1MA8 LINE L1 4720 5188 -1819 1915 155 0 0 chr12 81074411 81074707 -63207782 + AluSx SINE Alu 17 312 0 6065 177 33 21 chr12 81074707 81074922 -63207567 + L1MA8 LINE L1 5188 5399 -1608 207 0 0 0 chr12 81074922 81074945 -63207544 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6065 177 33 21 chr12 81074945 81075890 -63206599 + L1MA8 LINE L1 5399 6376 -631 1238 103 159 26 chr12 81075880 81076113 -63206376 + L1MA8 LINE L1 6734 6997 -10 * 304 248 159 18 chr12 81076136 81076249 -63206240 - MER5B DNA MER1_type -49 129 1 541 105 81 0 chr12 81076349 81076435 -63206054 - L1MA8 LINE L1 -181 6110 6018 21 36 0 0 chr12 81077680 81077708 -63204781 + AT_rich Low_complexity Low_complexity 1 28 0 723 237 0 24 chr12 81078168 81078337 -63204152 - MER91B DNA MER1_type -1 189 25 262 270 149 54 chr12 81078504 81078652 -63203837 + L3b LINE CR1 1266 1427 -156 698 273 6 17 chr12 81078667 81078839 -63203650 + MER5B DNA MER1_type 4 173 -5 313 255 27 6 chr12 81078896 81079011 -63203478 - MER5A DNA MER1_type -2 187 1 238 271 34 0 chr12 81079027 81079086 -63203403 + MER5A DNA MER1_type 9 69 -120 8947 44 0 6 chr12 81079091 81080219 -63202270 - L1P LINE L1 -3089 3057 1937 1255 45 0 0 chr12 81080219 81080375 -63202114 + L1PA5 LINE L1 5999 6154 0 301 192 303 0 chr12 81080375 81080474 -63202015 + MER5A DNA MER1_type 61 189 0 735 263 68 92 chr12 81080490 81080828 -63201661 - MER102b DNA MER1_type -11 330 1 375 360 83 33 chr12 81083151 81083295 -63199194 - L2 LINE L2 -189 3083 2948 351 0 0 0 chr12 81083295 81083334 -63199155 + (CA)n Simple_repeat Simple_repeat 2 40 0 375 360 83 33 chr12 81083334 81083552 -63198937 - L2 LINE L2 -324 2948 2702 324 292 142 41 chr12 81083892 81084159 -63198330 - L2 LINE L2 -1225 2089 1796 542 289 121 11 chr12 81085781 81085971 -63196518 + MIR SINE MIR 3 213 -49 8896 154 51 33 chr12 81086121 81088873 -63193616 + L1MA8 LINE L1 3477 6289 -2 558 301 31 48 chr12 81089244 81089473 -63193016 - MIR SINE MIR -1 261 37 604 260 57 31 chr12 81091294 81091521 -63190968 + Charlie8 DNA MER1_type 42 274 -2143 1640 251 49 24 chr12 81091989 81092117 -63190372 + L1MB8 LINE L1 14 137 -6722 2157 117 0 13 chr12 81092117 81092424 -63190065 - AluSx SINE Alu -9 303 1 1640 251 49 24 chr12 81092424 81092761 -63189728 + L1MB8 LINE L1 137 491 -6368 410 229 53 46 chr12 81092781 81092912 -63189577 - L1M4b LINE L1 -6714 145 14 694 275 0 0 chr12 81092955 81093093 -63189396 + L1MB8 LINE L1 482 619 -6240 428 160 13 0 chr12 81093087 81093162 -63189327 + L1MB8 LINE L1 928 1003 -5856 * 2022 247 90 3 chr12 81093150 81093794 -63188695 + L1MB8 LINE L1 4356 5055 -1902 3398 77 13 0 chr12 81093908 81094360 -63188129 + LTR22A LTR ERVK 1 458 0 1918 256 50 25 chr12 81095355 81096032 -63186457 + L1MB8 LINE L1 5046 5739 -1218 232 133 0 0 chr12 81096036 81096081 -63186408 + LTR66 LTR ERVL 394 438 -172 228 139 0 0 chr12 81096082 81096125 -63186364 + LTR66 LTR ERVL 394 436 -174 357 159 0 0 chr12 81096133 81096196 -63186293 + (TA)n Simple_repeat Simple_repeat 2 64 0 237 130 0 0 chr12 81096196 81096242 -63186247 - LTR66 LTR ERVL -171 439 394 188 182 23 0 chr12 81096252 81096296 -63186193 + (TA)n Simple_repeat Simple_repeat 2 46 0 3531 190 66 41 chr12 81096301 81097153 -63185336 + L1MB8 LINE L1 5741 6570 -419 315 0 0 0 chr12 81097153 81097188 -63185301 + (TTA)n Simple_repeat Simple_repeat 3 37 0 2765 81 0 0 chr12 81097188 81097548 -63184941 - L1PA5 LINE L1 -18 6136 5777 3531 190 66 41 chr12 81097548 81097902 -63184587 + L1MB8 LINE L1 6569 6964 -25 226 218 39 26 chr12 81098102 81098180 -63184309 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 230 325 103 26 chr12 81098518 81098635 -63183854 + MER5A DNA MER1_type 38 167 -15 * 497 273 67 40 chr12 81098626 81098879 -63183610 - L3 LINE CR1 -8 1569 1310 235 171 0 24 chr12 81099319 81099360 -63183129 + MER58B DNA MER1_type 1 40 -301 * 558 158 84 0 chr12 81099357 81099452 -63183037 + MER58B DNA MER1_type 197 299 -42 372 286 8 67 chr12 81099771 81099890 -63182599 + L2 LINE L2 3193 3304 -9 681 281 10 5 chr12 81099894 81100097 -63182392 + MIR SINE MIR 59 262 0 201 156 0 0 chr12 81100652 81100684 -63181805 + (TTG)n Simple_repeat Simple_repeat 2 33 0 225 94 0 0 chr12 81100742 81100774 -63181715 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 823 199 0 30 chr12 81101922 81102088 -63180401 - MLT1D LTR MaLR -2 503 343 * 1258 229 57 29 chr12 81102073 81102457 -63180032 + MLT1C LTR MaLR 35 429 -38 299 220 0 0 chr12 81102502 81102552 -63179937 + MLT1C LTR MaLR 418 467 0 689 199 51 132 chr12 81102552 81102948 -63179541 - MLT1D LTR MaLR -162 343 1 233 364 0 0 chr12 81102964 81103041 -63179448 + MER5A DNA MER1_type 7 83 -106 673 175 66 0 chr12 81103182 81103319 -63179170 - Tigger5 DNA MER2_type -1 2322 2177 398 250 0 0 chr12 81103300 81103376 -63179113 - Tigger5 DNA MER2_type -2244 79 4 * 530 188 9 18 chr12 81103504 81103616 -63178873 - MSTD LTR MaLR -2 394 284 558 224 84 14 chr12 81103667 81103810 -63178679 - MSTD LTR MaLR -243 153 1 23 0 0 0 chr12 81104388 81104411 -63178078 + AT_rich Low_complexity Low_complexity 1 23 0 1071 254 122 100 chr12 81104829 81105297 -63177192 + MLT1G LTR MaLR 1 478 -117 736 65 0 0 chr12 81105464 81105557 -63176932 + AluY SINE Alu 203 295 -16 2163 167 67 2 chr12 81106807 81107209 -63175280 + MSTA LTR MaLR 1 428 0 299 306 93 0 chr12 81107750 81107858 -63174631 + MIR SINE MIR 107 224 -38 22 0 0 0 chr12 81108510 81108532 -63173957 + AT_rich Low_complexity Low_complexity 1 22 0 5503 159 24 16 chr12 81109306 81111282 -63171207 + L1MA4 LINE L1 4295 6289 -11 286 337 24 77 chr12 81111548 81111717 -63170772 + MIR SINE MIR 48 207 -55 253 315 92 31 chr12 81111838 81111968 -63170521 - L3b LINE CR1 -125 1458 1321 206 382 106 0 chr12 81112535 81112705 -63169784 - MIR SINE MIR -26 236 49 855 178 137 19 chr12 81112935 81113205 -63169284 - MER33 DNA MER1_type -14 310 9 21 57 0 0 chr12 81113393 81113428 -63169061 + AT_rich Low_complexity Low_complexity 1 35 0 1202 293 93 27 chr12 81113690 81115309 -63167180 - L1ME3A LINE L1 -219 5934 4038 2424 55 0 35 chr12 81115309 81115620 -63166869 - AluY SINE Alu -11 300 1 1202 293 93 27 chr12 81115620 81116599 -63165890 - L1ME3A LINE L1 -2115 4038 3125 506 323 19 0 chr12 81116828 81116989 -63165500 - MLT1I LTR MaLR -18 391 228 533 304 78 48 chr12 81117193 81118170 -63164319 - L1MEd LINE L1 -4723 1587 552 1168 198 91 60 chr12 81118225 81118609 -63163880 + MSTD LTR MaLR 1 396 0 217 286 24 12 chr12 81121401 81121485 -63161004 + MIR SINE MIR 178 262 0 419 267 78 9 chr12 81121615 81121731 -63160758 - MIR SINE MIR -100 162 39 2311 127 11 30 chr12 81121731 81122058 -63160431 + THE1B LTR MaLR 1 322 -42 1725 135 3 85 chr12 81122058 81122400 -63160089 - AluSx SINE Alu 0 312 1 2311 127 11 30 chr12 81122400 81122443 -63160046 + THE1B LTR MaLR 322 364 0 556 256 44 12 chr12 81122977 81123137 -63159352 + MIR SINE MIR 87 251 -11 186 233 47 0 chr12 81123104 81123147 -63159342 + L2 LINE L2 3223 3267 -5 * 236 335 150 30 chr12 81123242 81123409 -63159080 + L2 LINE L2 3001 3187 -85 2087 155 31 72 chr12 81123847 81124139 -63158350 + MLT1C LTR MaLR 38 307 -160 1518 103 40 14 chr12 81124139 81124362 -63158127 - MER30 DNA MER1_type 0 230 2 2087 155 31 72 chr12 81124362 81124515 -63157974 + MLT1C LTR MaLR 307 465 -2 778 281 78 0 chr12 81125057 81125274 -63157215 + MIR SINE MIR 29 262 0 27 0 0 0 chr12 81125530 81125557 -63156932 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 81126249 81126270 -63156219 + AT_rich Low_complexity Low_complexity 1 21 0 365 242 74 21 chr12 81126497 81126592 -63155897 - MIR SINE MIR -63 145 46 29 0 0 0 chr12 81126897 81126926 -63155563 + AT_rich Low_complexity Low_complexity 1 29 0 1957 146 49 18 chr12 81127117 81127446 -63155043 - MER1B DNA MER1_type 0 339 1 3723 310 118 38 chr12 81127767 81127954 -63154535 - L2 LINE L2 0 3313 3143 5038 19 0 0 chr12 81127954 81128530 -63153959 + L1PA3 LINE L1 5580 6155 0 3723 310 118 38 chr12 81128530 81129586 -63152903 - L2 LINE L2 -170 3143 2174 2176 111 0 0 chr12 81129586 81129901 -63152588 - AluSc SINE Alu 0 315 1 3723 310 118 38 chr12 81129901 81131130 -63151359 - L2 LINE L2 -1139 2174 647 1543 124 67 18 chr12 81131161 81131444 -63151045 + L1MA8 LINE L1 5990 6286 -5 678 323 74 38 chr12 81131484 81131930 -63150559 - L2 LINE L2 -2716 598 137 881 250 62 5 chr12 81133638 81133846 -63148643 + MER58A DNA MER1_type 1 220 -4 1102 242 26 62 chr12 81134127 81134515 -63147974 - MLT1A2 LTR MaLR 0 374 1 32 26 0 0 chr12 81135270 81135309 -63147180 + AT_rich Low_complexity Low_complexity 1 39 0 1157 249 96 46 chr12 81136360 81136577 -63145912 + L2 LINE L2 2504 2709 -604 1594 201 53 8 chr12 81136577 81136935 -63145554 + MLT1A2 LTR MaLR 1 374 0 1157 249 96 46 chr12 81136935 81137422 -63145067 + L2 LINE L2 2709 3305 -8 3127 265 91 66 chr12 81137853 81138391 -63144098 - L2 LINE L2 -2 3311 2788 2302 119 30 25 chr12 81138391 81138753 -63143736 - THE1B LTR MaLR 0 364 1 3127 265 91 66 chr12 81138753 81140008 -63142481 - L2 LINE L2 -525 2788 1480 183 129 0 0 chr12 81141535 81141566 -63140923 + (CAT)n Simple_repeat Simple_repeat 2 32 0 525 282 46 75 chr12 81142520 81142688 -63139801 + MIR SINE MIR 29 189 -73 2262 118 0 0 chr12 81142688 81142994 -63139495 + AluSx SINE Alu 1 306 -6 525 282 46 75 chr12 81142994 81143066 -63139423 + MIR SINE MIR 189 262 0 2269 276 66 68 chr12 81143988 81144669 -63137820 + L2 LINE L2 1788 2469 -844 2756 3 0 3 chr12 81144669 81144969 -63137520 + AluYa5 SINE Alu 1 299 -12 2269 276 66 68 chr12 81144969 81145119 -63137370 + L2 LINE L2 2469 2618 -695 1033 187 22 49 chr12 81145119 81145344 -63137145 - MER20 DNA MER1_type 0 219 1 2269 276 66 68 chr12 81145344 81145520 -63136969 + L2 LINE L2 2618 2793 -520 1040 62 7 0 chr12 81145520 81145665 -63136824 + (GGAA)n Simple_repeat Simple_repeat 4 149 0 2269 276 66 68 chr12 81145665 81146180 -63136309 + L2 LINE L2 2793 3309 -4 294 266 115 37 chr12 81147799 81147943 -63134546 + MIR SINE MIR 35 189 -65 21 0 0 0 chr12 81148371 81148392 -63134097 + AT_rich Low_complexity Low_complexity 1 21 0 594 247 47 29 chr12 81149254 81149424 -63133065 + MIR3 SINE MIR 15 187 -21 24 32 0 0 chr12 81149612 81149643 -63132846 + AT_rich Low_complexity Low_complexity 1 31 0 960 288 32 74 chr12 81149995 81150468 -63132021 - LTR16A1 LTR ERVL 0 457 5 346 267 12 0 chr12 81150494 81150580 -63131909 - L2 LINE L2 0 3313 3227 284 349 26 104 chr12 81151014 81151206 -63131283 - L2 LINE L2 -1 3271 3095 3390 285 92 29 chr12 81151768 81152594 -63129895 + L2 LINE L2 1485 2257 -1056 369 0 0 0 chr12 81152594 81152635 -63129854 + (CA)n Simple_repeat Simple_repeat 1 41 0 3390 285 92 29 chr12 81152635 81153433 -63129056 + L2 LINE L2 2257 3230 -83 11064 24 2 0 chr12 81153463 81155535 -63126954 + L1PA3 LINE L1 4079 6153 -2 208 343 49 29 chr12 81155697 81155799 -63126690 - L2 LINE L2 -231 3041 2938 2024 135 0 7 chr12 81155883 81156180 -63126309 + AluSx SINE Alu 1 295 -17 564 354 39 36 chr12 81156342 81156673 -63125816 - L2 LINE L2 -440 2874 2543 357 314 96 0 chr12 81157895 81158051 -63124438 + MER117 DNA MER1_type 1 171 -26 414 299 22 22 chr12 81158208 81158342 -63124147 - L2 LINE L2 0 3313 3180 1596 205 62 58 chr12 81160679 81161182 -63121307 + MLT1D LTR MaLR 1 505 0 359 285 93 29 chr12 81161444 81161616 -63120873 + MER5A DNA MER1_type 7 189 0 687 273 190 32 chr12 81162340 81162651 -63119838 - L2 LINE L2 -1 3312 2953 8697 32 4 0 chr12 81162721 81163766 -63118723 - L1PA3 LINE L1 -1568 4578 3530 7589 31 0 0 chr12 81163766 81165364 -63117125 + L1PA3 LINE L1 4556 6152 -3 23 0 0 0 chr12 81165364 81165387 -63117102 + AT_rich Low_complexity Low_complexity 1 23 0 2066 82 21 0 chr12 81165810 81166089 -63116400 + L1PA10 LINE L1 5866 6150 -18 21 57 0 0 chr12 81166216 81166251 -63116238 + AT_rich Low_complexity Low_complexity 1 35 0 834 254 72 50 chr12 81166277 81166917 -63115572 - L1ME LINE L1 -590 5572 4903 328 341 85 17 chr12 81167215 81167508 -63114981 - L1ME LINE L1 -1590 4556 4244 338 313 90 8 chr12 81167527 81167817 -63114672 - L1ME LINE L1 -2013 4133 3810 316 286 117 45 chr12 81168014 81168306 -63114183 - L1ME LINE L1 -2719 3427 3158 2429 131 40 26 chr12 81168306 81168734 -63113755 - Tigger2a DNA MER2_type 0 434 1 316 286 117 45 chr12 81168734 81169022 -63113467 - L1ME LINE L1 -2988 3158 2805 370 262 49 43 chr12 81169081 81169245 -63113244 - L1MA9 LINE L1 -38 6274 6110 * 1809 189 32 19 chr12 81169240 81169616 -63112873 + L1MA9 LINE L1 5676 6056 -256 745 154 0 7 chr12 81169686 81169822 -63112667 - L1 LINE L1 -1449 4697 4563 481 283 69 26 chr12 81170154 81170387 -63112102 + L2 LINE L2 2457 2699 -615 5772 117 16 0 chr12 81170387 81171499 -63110990 - L1PA14 LINE L1 0 6161 5025 255 312 13 0 chr12 81171862 81171939 -63110550 + L2 LINE L2 3236 3313 0 201 286 143 45 chr12 81172001 81172134 -63110355 + L2 LINE L2 3124 3269 -44 198 103 0 0 chr12 81172134 81172163 -63110326 + (CA)n Simple_repeat Simple_repeat 2 30 0 212 212 59 0 chr12 81172172 81172257 -63110232 + (TA)n Simple_repeat Simple_repeat 2 91 0 47 19 0 0 chr12 81172257 81172311 -63110178 + AT_rich Low_complexity Low_complexity 1 54 0 365 232 49 12 chr12 81172414 81172496 -63109993 - L2 LINE L2 -18 3295 3211 493 342 47 16 chr12 81172963 81173432 -63109057 - L1ME2 LINE L1 -301 5863 5379 26 0 0 0 chr12 81173966 81173992 -63108497 + AT_rich Low_complexity Low_complexity 1 26 0 335 317 237 24 chr12 81175179 81175551 -63106938 - L2 LINE L2 -353 2961 2511 401 259 156 22 chr12 81176535 81176670 -63105819 + MIR SINE MIR 2 154 -108 364 337 84 27 chr12 81177215 81177367 -63105122 - MIR3 SINE MIR -63 145 10 846 80 35 146 chr12 81178859 81179058 -63103431 + L1MA8 LINE L1 6109 6285 -6 1002 237 48 85 chr12 81179134 81179488 -63103001 + MLT1E LTR MaLR 15 355 -238 1073 279 84 7 chr12 81229521 81229962 -63052527 + L1MEc LINE L1 1388 1862 -4534 352 361 118 12 chr12 81230076 81230331 -63052158 + L1M4 LINE L1 3955 4236 -1910 471 248 64 41 chr12 81230649 81230867 -63051622 + L1MC4 LINE L1 7574 7796 -246 283 255 59 29 chr12 81230879 81230981 -63051508 - MLT1H LTR MaLR -16 551 447 581 276 65 51 chr12 81231065 81231340 -63051149 - MLT1H LTR MaLR -258 291 13 710 212 29 85 chr12 81231357 81231618 -63050871 + L1MC4 LINE L1 7807 8041 -1 5619 167 2 3 chr12 81231820 81232848 -63049641 - L1P LINE L1 -1300 4846 3820 493 260 39 50 chr12 81232967 81233225 -63049264 + L1M4c LINE L1 1357 1999 -4384 521 268 92 44 chr12 81233707 81233979 -63048510 + MLT1K LTR MaLR 250 534 -54 2502 200 90 8 chr12 81234634 81235244 -63047245 + LTR1B LTR ERV1 1 660 -166 7487 111 1 6 chr12 81235347 81236428 -63046061 + L1P LINE L1 2 1077 -5069 2562 187 74 27 chr12 81236863 81237552 -63044937 - LTR1B LTR ERV1 -67 718 13 578 234 208 5 chr12 81237784 81237976 -63044513 + MIR SINE MIR 4 234 -28 239 330 50 70 chr12 81238494 81238752 -63043737 + MLT1K LTR MaLR 274 526 -62 290 285 19 63 chr12 81239683 81239841 -63042648 + LTR16C LTR ERVL 340 490 -1 345 380 31 8 chr12 81240655 81240784 -63041705 + L2 LINE L2 3141 3272 0 224 167 24 24 chr12 81241464 81241548 -63040941 + (TA)n Simple_repeat Simple_repeat 1 84 0 255 71 24 0 chr12 81241549 81241591 -63040898 - L1PA16 LINE L1 -9 6157 6115 1580 306 132 22 chr12 81241627 81242640 -63039849 + L2 LINE L2 1728 2852 -462 260 301 137 58 chr12 81244715 81244941 -63037548 + LTR16A LTR ERVL 90 333 -117 412 238 25 81 chr12 81245552 81245712 -63036777 - LTR16C LTR ERVL -1 490 340 192 329 13 13 chr12 81246037 81246113 -63036376 + L2 LINE L2 3190 3265 -7 296 321 46 72 chr12 81246637 81246899 -63035590 - MLT1K LTR MaLR -57 531 277 604 219 214 10 chr12 81247418 81247610 -63034879 - MIR SINE MIR -28 234 4 231 36 0 0 chr12 81248601 81248629 -63033860 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 208 313 0 0 chr12 81248629 81248677 -63033812 - L2 LINE L2 -13 3300 3253 413 257 115 0 chr12 81250958 81251071 -63031418 - L2 LINE L2 -6 3266 3141 478 326 59 41 chr12 81251435 81251705 -63030784 - MLT1L LTR MaLR -221 394 120 270 274 131 0 chr12 81252167 81252251 -63030238 - MIR SINE MIR -72 190 96 1930 154 0 3 chr12 81254889 81255182 -63027307 - AluJb SINE Alu -16 296 5 292 139 0 0 chr12 81255314 81255357 -63027132 + AluJb SINE Alu 86 128 -174 776 168 0 0 chr12 81255361 81255480 -63027009 - FLAM_C SINE Alu -10 123 5 687 223 82 22 chr12 81255480 81255664 -63026825 - MER21B LTR ERV1 -668 195 1 1861 184 40 28 chr12 81256145 81256570 -63025919 - Tigger2a DNA MER2_type -4 430 1 30 0 0 0 chr12 81256804 81256834 -63025655 + AT_rich Low_complexity Low_complexity 1 30 0 15274 157 32 16 chr12 81256838 81257740 -63024749 - L1MA3 LINE L1 0 7724 6838 6986 60 106 0 chr12 81257740 81258771 -63023718 - L1PA8 LINE L1 -13 6159 5101 15274 157 32 16 chr12 81258771 81261934 -63020555 - L1MA3 LINE L1 -886 6838 3726 2155 120 7 0 chr12 81261934 81262234 -63020255 - AluSc SINE Alu -7 302 1 15274 157 32 16 chr12 81262234 81262560 -63019929 - L1MA3 LINE L1 -3998 3726 3407 2249 104 0 3 chr12 81262560 81262859 -63019630 - AluSc SINE Alu -7 302 5 15274 157 32 16 chr12 81262859 81263130 -63019359 - L1MA3 LINE L1 -4317 3407 2974 3141 176 9 38 chr12 81263133 81263707 -63018782 - L1MA3 LINE L1 -6990 575 19 856 294 85 38 chr12 81263708 81264212 -63018277 + MLT2F LTR ERVL 84 661 -2 29 0 0 0 chr12 81264714 81264743 -63017746 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr12 81264825 81264845 -63017644 + (CAA)n Simple_repeat Simple_repeat 2 21 0 315 237 74 22 chr12 81265256 81265391 -63017098 - L1ME4a LINE L1 -15 6106 5965 1328 227 61 47 chr12 81265547 81265938 -63016551 - L1ME1 LINE L1 -5 6161 5767 352 235 33 162 chr12 81266156 81266428 -63016061 - L2 LINE L2 -42 3271 3035 281 261 68 57 chr12 81266446 81266650 -63015839 - L1ME4a LINE L1 -285 5836 5672 525 210 76 8 chr12 81266650 81266769 -63015720 + FLAM_A SINE Alu 3 129 -4 281 261 68 57 chr12 81266769 81266853 -63015636 - L1ME4a LINE L1 -449 5672 5590 392 269 62 59 chr12 81266860 81267116 -63015373 - L1ME4a LINE L1 -2301 3845 3589 1276 237 119 20 chr12 81267562 81267867 -63014622 + L1MEc LINE L1 45 399 -5997 213 39 0 0 chr12 81267867 81267893 -63014596 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1276 237 119 20 chr12 81267893 81267983 -63014506 + L1MEc LINE L1 399 479 -5917 5476 116 40 2 chr12 81268013 81269718 -63012771 + L1PA16 LINE L1 4407 6157 -9 186 133 0 0 chr12 81269747 81269777 -63012712 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 3124 262 113 40 chr12 81269804 81271284 -63011205 + L1ME LINE L1 275 1862 -4534 271 383 69 0 chr12 81271401 81271589 -63010900 + L1ME LINE L1 4026 4226 -1989 338 256 105 37 chr12 81271680 81271871 -63010618 + L1ME LINE L1 4381 4584 -1631 2066 82 0 11 chr12 81271907 81272174 -63010315 + AluSg SINE Alu 3 266 -44 246 274 65 16 chr12 81272228 81272352 -63010137 + L1ME LINE L1 4755 4884 -1331 341 292 58 0 chr12 81272410 81272547 -63009942 + L1ME LINE L1 5110 5254 -961 375 295 67 29 chr12 81272628 81272838 -63009651 + L1ME LINE L1 5437 5654 -577 2476 56 0 3 chr12 81272953 81273257 -63009232 - AluY SINE Alu -8 303 1 27 49 0 0 chr12 81273283 81273324 -63009165 + AT_rich Low_complexity Low_complexity 1 41 0 23 68 0 0 chr12 81273331 81273375 -63009114 + AT_rich Low_complexity Low_complexity 1 44 0 526 240 74 40 chr12 81273576 81273751 -63008738 - MLT1I LTR MaLR -120 289 109 373 318 191 52 chr12 81274558 81275343 -63007146 - L2 LINE L2 -9 3263 2358 489 227 0 0 chr12 81276350 81276447 -63006042 + MER69 DNA AcHobo 33 129 -1097 376 211 30 3 chr12 81276422 81276531 -63005958 + MER69 DNA AcHobo 2412 2525 -1 * 487 262 16 8 chr12 81279841 81279967 -63002522 + MER5B DNA MER1_type 1 127 -51 2040 119 11 3 chr12 81279980 81280266 -63002223 + AluSc SINE Alu 1 288 -21 2496 143 66 16 chr12 81281622 81282049 -63000440 + MER4D LTR ERV1 1 448 -455 208 333 83 19 chr12 81282151 81282259 -63000230 - L3 LINE CR1 -1164 413 299 2248 140 8 11 chr12 81282271 81282636 -62999853 + THE1B LTR MaLR 1 364 0 10097 113 23 32 chr12 81282639 81284230 -62998259 + THE1B-int LTR MaLR 5 1580 0 2377 118 11 14 chr12 81284231 81284595 -62997894 + THE1B LTR MaLR 2 364 0 24 32 0 0 chr12 81285245 81285276 -62997213 + AT_rich Low_complexity Low_complexity 1 31 0 1001 44 7 0 chr12 81287545 81287680 -62994809 + (TAGA)n Simple_repeat Simple_repeat 4 139 0 762 231 11 16 chr12 81289124 81289310 -62993179 + MER5A DNA MER1_type 5 189 0 441 138 0 0 chr12 81289399 81289464 -62993025 + MLT1G LTR MaLR 1 65 -530 889 284 15 34 chr12 81289468 81289786 -62992703 + MLT1G LTR MaLR 33 312 -283 539 176 5 65 chr12 81289811 81289963 -62992526 + MLT1F LTR MaLR 383 590 -36 316 268 50 50 chr12 81290347 81290526 -62991963 - L1M4 LINE L1 -1596 4550 4372 306 306 16 0 chr12 81290664 81290788 -62991701 - L1M4 LINE L1 -1909 4237 4112 24 67 0 0 chr12 81290790 81290835 -62991654 + AT_rich Low_complexity Low_complexity 1 45 0 236 273 0 52 chr12 81291301 81291378 -62991111 - MIR SINE MIR 0 262 190 183 374 157 39 chr12 81291586 81291974 -62990515 + L2 LINE L2 2819 3252 -20 271 327 159 0 chr12 81292335 81292442 -62990047 + L2 LINE L2 3190 3313 0 1503 198 69 71 chr12 81292806 81293270 -62989219 + MLT1C LTR MaLR 5 467 0 251 260 78 0 chr12 81295264 81295341 -62987148 + MIR SINE MIR 22 104 -104 303 303 118 7 chr12 81295613 81295765 -62986724 - MIR SINE MIR -46 216 48 3530 45 5 2 chr12 81296291 81296737 -62985752 + LTR7 LTR ERV1 1 447 -3 280 268 143 56 chr12 81298142 81298343 -62984146 + MIR3 SINE MIR 2 224 -38 4301 193 56 17 chr12 81298372 81299500 -62982989 - L1MB8 LINE L1 -2 6987 5818 390 313 42 72 chr12 81299563 81299828 -62982661 - L1ME4a LINE L1 -22 6099 5843 866 175 6 6 chr12 81300254 81300431 -62982058 - L1MB8 LINE L1 -3701 3256 3080 380 287 103 3 chr12 81300408 81300608 -62981881 - L1MB8 LINE L1 -6083 776 504 * 249 217 17 0 chr12 81300989 81301049 -62981440 + LTR37A LTR ERV1 118 178 -248 679 143 39 7 chr12 81301083 81301237 -62981252 + LTR37A LTR ERV1 268 426 0 369 0 0 0 chr12 81301542 81301583 -62980906 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr12 81301632 81301653 -62980836 + AT_rich Low_complexity Low_complexity 1 21 0 732 227 68 17 chr12 81303045 81303236 -62979253 - MIR SINE MIR -49 213 2 212 143 0 0 chr12 81303532 81303567 -62978922 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr12 81304990 81305027 -62977462 + AT_rich Low_complexity Low_complexity 1 37 0 218 250 356 0 chr12 81305223 81305327 -62977162 - L2 LINE L2 -13 3300 3160 1871 154 0 20 chr12 81305364 81305669 -62976820 + AluSx SINE Alu 2 300 -12 3681 179 31 8 chr12 81305681 81306400 -62976089 + L1MB1 LINE L1 5433 6167 -1 219 316 199 29 chr12 81306443 81306649 -62975840 - L2 LINE L2 -179 3093 2853 270 328 131 22 chr12 81307096 81307547 -62974942 - L2 LINE L2 -903 2411 1912 393 305 52 90 chr12 81307620 81308063 -62974426 + L1MEd LINE L1 19 444 -5675 2454 60 0 22 chr12 81308259 81308577 -62973912 - AluY SINE Alu 0 311 1 311 78 20 0 chr12 81308585 81308636 -62973853 + (TC)n Simple_repeat Simple_repeat 1 52 0 367 231 128 52 chr12 81308646 81308930 -62973559 + L1MEd LINE L1 681 957 -5162 253 333 34 34 chr12 81309078 81309255 -62973234 - LTR33 LTR ERVL -7 514 338 364 268 73 0 chr12 81309431 81309554 -62972935 - LTR33 LTR ERVL -310 211 80 237 290 101 17 chr12 81309948 81310080 -62972409 + Charlie8 DNA MER1_type 140 278 -2139 193 244 116 23 chr12 81310549 81310635 -62971854 + L2 LINE L2 2778 2871 -443 1680 157 202 3 chr12 81312600 81312784 -62969705 + MSTA LTR MaLR 1 147 -281 306 50 0 0 chr12 81312784 81312824 -62969665 + (TC)n Simple_repeat Simple_repeat 1 40 0 1680 157 202 3 chr12 81312824 81312996 -62969493 + MSTA LTR MaLR 147 428 0 325 242 70 70 chr12 81313043 81313171 -62969318 - MIR SINE MIR -116 146 19 507 247 18 59 chr12 81313257 81313427 -62969062 - L2 LINE L2 -1 3312 3150 2075 154 21 5 chr12 81313435 81313817 -62968672 + L1MB7 LINE L1 5642 6029 -155 441 343 75 22 chr12 81313924 81314236 -62968253 - L2 LINE L2 -248 3065 2719 770 305 84 19 chr12 81314240 81314561 -62967928 - L2 LINE L2 -2 3311 2970 * 1584 276 107 17 chr12 81314554 81315151 -62967338 - L2 LINE L2 -1231 2083 1433 5162 107 81 7 chr12 81315181 81316477 -62966012 + L1PA16 LINE L1 4307 5714 -452 2629 120 3 0 chr12 81316477 81316851 -62965638 + THE1C LTR MaLR 1 375 0 5162 107 81 7 chr12 81316851 81317330 -62965159 + L1PA16 LINE L1 5714 6156 -10 337 333 93 0 chr12 81317331 81317460 -62965029 - L2 LINE L2 -607 2707 2567 255 247 96 0 chr12 81318961 81319034 -62963455 - MIR SINE MIR -19 243 164 415 255 11 0 chr12 81319436 81319530 -62962959 + MER5A DNA MER1_type 10 104 -85 2624 310 89 21 chr12 81320607 81322377 -62960112 - ERVL LTR ERVL -1167 4597 2656 546 234 35 84 chr12 81323026 81323252 -62959237 + MER102a DNA MER1_type 108 322 -8 940 178 195 12 chr12 81323970 81324247 -62958242 + MLT2B2 LTR ERVL 1 397 -157 507 56 0 0 chr12 81324247 81324318 -62958171 + (CCA)n Simple_repeat Simple_repeat 2 72 0 940 178 195 12 chr12 81324318 81324380 -62958109 + MLT2B2 LTR ERVL 397 446 -108 509 0 16 0 chr12 81324393 81324454 -62958035 + (TG)n Simple_repeat Simple_repeat 2 63 0 324 322 91 0 chr12 81324476 81324597 -62957892 + MIR SINE MIR 81 212 -50 5905 135 96 122 chr12 81325158 81326904 -62955585 - pTR5 LTR ERV1 0 2438 742 23 33 0 0 chr12 81327604 81327634 -62954855 + AT_rich Low_complexity Low_complexity 1 30 0 355 150 12 38 chr12 81328139 81328219 -62954270 + MER116 DNA Mariner 3 80 0 24 0 0 0 chr12 81330229 81330253 -62952236 + AT_rich Low_complexity Low_complexity 1 24 0 646 290 90 19 chr12 81330873 81331183 -62951306 - MLT1J2 LTR MaLR -118 332 1 654 262 55 22 chr12 81331218 81331489 -62951000 - MER102b DNA MER1_type -10 331 52 197 350 124 77 chr12 81331933 81332256 -62950233 - L2 LINE L2 -1 3271 2934 22 0 0 0 chr12 81334058 81334080 -62948409 + AT_rich Low_complexity Low_complexity 1 22 0 226 295 74 0 chr12 81335310 81335405 -62947084 + LTR16A LTR ERVL 87 188 -262 1524 146 0 54 chr12 81335424 81335685 -62946804 - AluJb SINE Alu -65 247 1 258 176 29 15 chr12 81335811 81335879 -62946610 + LTR16A LTR ERVL 382 450 0 321 302 0 0 chr12 81335938 81336044 -62946445 - HsTC2 DNA Tc2 -1014 884 779 1805 179 6 6 chr12 81336422 81336773 -62945716 + L1MB1 LINE L1 5817 6167 -1 1577 249 39 23 chr12 81336813 81337375 -62945114 + L1MC4 LINE L1 7226 7796 -246 353 219 8 92 chr12 81337379 81337498 -62944991 - MLT1H LTR MaLR -8 541 433 627 258 63 49 chr12 81337572 81337859 -62944630 - MLT1H LTR MaLR -258 291 1 734 196 28 88 chr12 81337863 81338113 -62944376 + L1MC4 LINE L1 7807 8041 -1 392 315 14 14 chr12 81339329 81339472 -62943017 + MIR SINE MIR 119 261 -1 359 387 35 0 chr12 81340274 81340447 -62942042 - MER91B DNA MER1_type -8 182 4 547 210 54 137 chr12 81341025 81341230 -62941259 + MER5A DNA MER1_type 2 189 0 576 164 86 8 chr12 81341881 81342009 -62940480 + MLT1B LTR MaLR 1 138 -252 863 156 0 30 chr12 81342021 81342035 -62940454 - AluJb SINE Alu -181 131 118 267 31 0 0 chr12 81342035 81342067 -62940422 + (TTA)n Simple_repeat Simple_repeat 2 33 0 863 156 0 30 chr12 81342067 81342187 -62940302 - AluJb SINE Alu -194 118 1 785 223 34 9 chr12 81342190 81342414 -62940075 + MLT1B LTR MaLR 141 386 -4 406 212 139 22 chr12 81342426 81342563 -62939926 + MER5B DNA MER1_type 26 178 0 235 310 23 23 chr12 81343428 81343515 -62938974 - LTR67 LTR ERVL -379 178 92 889 318 94 15 chr12 81343843 81344806 -62937683 - ERVL LTR ERVL -822 4942 3704 450 0 0 0 chr12 81344806 81344856 -62937633 + (CA)n Simple_repeat Simple_repeat 2 51 0 889 318 94 15 chr12 81344856 81345319 -62937170 - ERVL LTR ERVL -2060 3704 3279 315 297 0 42 chr12 81345343 81345461 -62937028 + L1MC4 LINE L1 6595 6707 -1335 1801 149 13 19 chr12 81345474 81345789 -62936700 + MER7A DNA MER2_type 1 311 -35 2243 81 0 7 chr12 81345789 81346084 -62936405 + AluY SINE Alu 1 293 -18 490 354 12 8 chr12 81346162 81346402 -62936087 - ERVL LTR ERVL -3579 2185 1945 1673 199 21 3 chr12 81346776 81347103 -62935386 + LTR32 LTR ERVL 15 347 -124 860 154 0 7 chr12 81347251 81347400 -62935089 + LTR32 LTR ERVL 324 471 0 2098 123 7 0 chr12 81347632 81347934 -62934555 - AluSq SINE Alu -9 304 1 294 259 72 7 chr12 81349071 81349210 -62933279 - LTR67 LTR ERVL -2 555 408 316 246 130 7 chr12 81349814 81349952 -62932537 - L1MA10 LINE L1 -2 6332 6178 2376 87 0 0 chr12 81350313 81350611 -62931878 - AluSc SINE Alu -11 298 1 746 225 15 70 chr12 81350987 81351031 -62931458 - MER5A DNA MER1_type 0 189 144 1830 139 3 14 chr12 81351031 81351358 -62931131 - AluSx SINE Alu 0 327 4 746 225 15 70 chr12 81351358 81351511 -62930978 - MER5A DNA MER1_type -45 144 1 337 380 31 8 chr12 81352540 81352669 -62929820 + L2 LINE L2 3141 3272 0 224 167 24 24 chr12 81353349 81353433 -62929056 + (TA)n Simple_repeat Simple_repeat 1 84 0 242 71 24 0 chr12 81353434 81353476 -62929013 - L1PA16 LINE L1 -9 6157 6115 2479 272 125 18 chr12 81353512 81354534 -62927955 + L2 LINE L2 1728 2859 -455 539 49 136 0 chr12 81354572 81354653 -62927836 + AluSg/x SINE Alu 214 305 -4 529 274 175 49 chr12 81354670 81354995 -62927494 + L2 LINE L2 2942 3307 -6 41840 44 3 1 chr12 81355221 81361366 -62921123 + L1PA4 LINE L1 2 6155 0 632 332 70 10 chr12 81361457 81361755 -62920734 + L2 LINE L2 2994 3309 -4 256 320 29 0 chr12 81361787 81361959 -62920530 + L1ME LINE L1 5707 5883 -238 280 331 32 32 chr12 81363572 81363729 -62918760 + MIR SINE MIR 47 203 -59 3224 171 95 13 chr12 81364484 81365192 -62917297 + LTR1B LTR ERV1 1 766 -60 326 343 63 6 chr12 81366215 81366390 -62916099 + L1ME LINE L1 5616 5800 -321 3361 240 92 31 chr12 81366420 81367449 -62915040 + L1M4b LINE L1 18 1109 -5750 4477 141 56 10 chr12 81368467 81369257 -62913232 - LTR1B LTR ERV1 0 826 1 1243 264 116 41 chr12 81369299 81369953 -62912536 - MER50 LTR ERV1 -22 712 10 193 311 132 9 chr12 81370068 81370174 -62912315 + L2 LINE L2 3194 3312 -1 475 351 117 5 chr12 81370946 81371168 -62911321 - MIR SINE MIR -5 257 11 815 262 108 64 chr12 81372042 81372071 -62910418 - MLT1H LTR MaLR -37 512 486 2078 110 14 0 chr12 81372071 81372361 -62910128 - AluSx SINE Alu -16 296 3 815 262 108 64 chr12 81372361 81372801 -62909688 - MLT1H LTR MaLR -63 486 22 913 141 0 47 chr12 81372850 81373020 -62909469 + L1MD1 LINE L1 6076 6237 -5 842 177 0 0 chr12 81373064 81373188 -62909301 + FLAM_C SINE Alu 1 124 -19 189 0 0 0 chr12 81373191 81373212 -62909277 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 229 306 130 9 chr12 81373307 81373415 -62909074 - L2 LINE L2 -3 3310 3190 1848 161 0 7 chr12 81373501 81373806 -62908683 + AluJo SINE Alu 6 308 -4 347 333 71 26 chr12 81374314 81374581 -62907908 + MLT1K LTR MaLR 310 588 0 2050 189 9 21 chr12 81375036 81375079 -62907410 - MLT2D LTR ERVL 0 414 372 297 0 0 0 chr12 81375079 81375112 -62907377 + (TG)n Simple_repeat Simple_repeat 2 34 0 2050 189 9 21 chr12 81375112 81375487 -62907002 - MLT2D LTR ERVL -42 372 1 536 262 73 52 chr12 81375626 81375817 -62906672 + MIR3 SINE MIR 4 198 -10 2866 203 18 136 chr12 81376256 81378123 -62904366 + L1M3a LINE L1 11 1651 -4384 541 259 91 44 chr12 81378615 81378889 -62903600 + MLT1K LTR MaLR 250 536 -52 367 294 49 31 chr12 81378913 81379076 -62903413 - MARNA DNA Mariner -370 216 51 334 194 0 0 chr12 81379136 81379198 -62903291 - LTR3b LTR ERVK 0 500 439 1855 166 48 60 chr12 81379199 81379633 -62902856 - LTR3 LTR ERVK 0 429 1 254 267 13 40 chr12 81379677 81379752 -62902737 - MLT1K LTR MaLR -514 74 2 1715 156 3 64 chr12 81380072 81380386 -62902103 + AluJo SINE Alu 1 295 -17 2069 277 90 64 chr12 81381324 81382555 -62899934 - L2 LINE L2 -1 3312 2067 414 316 131 6 chr12 81382583 81382751 -62899738 - MIR SINE MIR -72 190 2 603 323 49 80 chr12 81383255 81383905 -62898584 + L2 LINE L2 1050 1679 -1635 257 218 13 51 chr12 81384150 81384228 -62898261 - MIR SINE MIR -5 257 183 522 206 43 7 chr12 81384896 81385037 -62897452 - MER104 DNA Tc2 0 180 35 453 19 0 0 chr12 81385612 81385666 -62896823 + (CA)n Simple_repeat Simple_repeat 1 54 0 570 63 0 0 chr12 81386326 81386405 -62896084 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 309 331 16 8 chr12 81386666 81386790 -62895699 - MIR3 SINE MIR -3 205 81 350 297 127 34 chr12 81389636 81389872 -62892617 + L1M3a LINE L1 2626 2883 -3151 494 340 165 12 chr12 81389896 81390308 -62892181 + L2 LINE L2 2324 2798 -516 404 298 58 21 chr12 81390315 81390506 -62891983 + Charlie8 DNA MER1_type 13 210 -2207 1203 181 55 16 chr12 81390570 81390879 -62891610 - L1MA9 LINE L1 -5 6307 5987 442 120 0 0 chr12 81390886 81390961 -62891528 - AluSx SINE Alu 0 312 238 1538 77 0 0 chr12 81390962 81391143 -62891346 - AluSx SINE Alu -131 181 1 1622 171 14 41 chr12 81391215 81391561 -62890928 - AluJo SINE Alu 0 338 1 609 14 0 0 chr12 81391807 81391877 -62890612 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 191 240 10 140 chr12 81391906 81392006 -62890483 - L2 LINE L2 -12 3301 3215 7089 54 1 10 chr12 81392006 81392970 -62889519 + L1PA5 LINE L1 5199 6154 0 317 133 17 0 chr12 81392970 81393027 -62889462 + L1PB1 LINE L1 6090 6150 -1 211 47 93 0 chr12 81393117 81393160 -62889329 + A-rich Low_complexity Low_complexity 4 50 0 321 289 138 38 chr12 81394525 81394684 -62887805 + MIR SINE MIR 80 254 -8 266 274 0 0 chr12 81394683 81394745 -62887744 + MIR3 SINE MIR 146 207 -1 * 427 222 10 0 chr12 81395454 81395553 -62886936 - L1ME3A LINE L1 -8 6162 6063 558 190 132 39 chr12 81395560 81395765 -62886724 - MLT1B LTR MaLR -166 224 1 356 238 122 14 chr12 81395783 81395930 -62886559 - MIR SINE MIR 0 262 100 484 272 35 17 chr12 81395933 81396106 -62886383 + L2 LINE L2 2709 2884 -430 201 277 10 79 chr12 81398421 81398522 -62883967 + MIR SINE MIR 103 196 -66 219 114 0 0 chr12 81399997 81400032 -62882457 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 244 274 0 27 chr12 81400033 81400106 -62882383 - MIR SINE MIR -164 98 28 795 273 55 4 chr12 81400200 81400438 -62882051 - MIR SINE MIR 0 262 13 186 268 14 28 chr12 81401876 81401947 -62880542 + MIR3 SINE MIR 107 176 -32 315 49 0 0 chr12 81402614 81402655 -62879834 + (CAA)n Simple_repeat Simple_repeat 1 41 0 245 346 50 40 chr12 81402826 81403028 -62879461 - L2 LINE L2 -345 2969 2766 190 0 67 0 chr12 81403520 81403550 -62878939 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1088 126 16 21 chr12 81404071 81404261 -62878228 - MER53 DNA DNA 0 189 1 386 234 213 14 chr12 81404385 81404526 -62877963 + MER5B DNA MER1_type 10 178 0 378 225 38 0 chr12 81404673 81404753 -62877736 + Tigger3(Golem) DNA MER2_type 2945 3027 -2 180 238 32 48 chr12 81405908 81405971 -62876518 - MIR SINE MIR -115 147 86 213 39 0 0 chr12 81406517 81406543 -62875946 + (CA)n Simple_repeat Simple_repeat 1 26 0 336 294 209 16 chr12 81406579 81406766 -62875723 - L2 LINE L2 -172 3141 2919 265 330 115 5 chr12 81407378 81407569 -62874920 - MLT1J LTR MaLR -294 217 6 366 23 0 0 chr12 81407901 81407944 -62874545 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 526 192 0 20 chr12 81408016 81408115 -62874374 + MLT1J2 LTR MaLR 36 132 -318 545 213 154 32 chr12 81408142 81408363 -62874126 + MLT1J1 LTR MaLR 191 438 -8 499 188 28 150 chr12 81409030 81409243 -62873246 + MER102a DNA MER1_type 143 329 -1 6080 96 10 44 chr12 81409954 81411171 -62871318 + L1PA14 LINE L1 4971 6161 0 1239 123 23 0 chr12 81411485 81411656 -62870833 + AluSg/x SINE Alu 117 291 -21 181 185 31 0 chr12 81411695 81411760 -62870729 + (TA)n Simple_repeat Simple_repeat 2 68 0 2108 105 7 3 chr12 81412123 81412409 -62870080 - AluSg SINE Alu -10 300 14 504 219 143 46 chr12 81413074 81413270 -62869219 - MER54B LTR ERVL -111 682 468 230 156 0 0 chr12 81413270 81413315 -62869174 + CT-rich Low_complexity Low_complexity 2 46 0 525 191 0 29 chr12 81413315 81413420 -62869069 - MER54B LTR ERVL -293 500 399 382 193 11 0 chr12 81413979 81414067 -62868422 - L1PB4 LINE L1 0 6156 6068 1899 119 37 4 chr12 81414770 81415039 -62867450 + AluSx SINE Alu 21 298 -14 264 300 95 121 chr12 81415823 81416203 -62866286 + L2 LINE L2 2899 3268 -4 205 280 20 0 chr12 81416987 81417037 -62865452 - MER5A DNA MER1_type -83 106 56 244 242 77 44 chr12 81417094 81417185 -62865304 + MER5A DNA MER1_type 4 97 -92 414 258 78 71 chr12 81417826 81418059 -62864430 - MIR SINE MIR -17 245 5 338 217 0 0 chr12 81418402 81418462 -62864027 - MER5A DNA MER1_type -129 60 1 871 152 43 27 chr12 81419779 81419963 -62862526 + MER41B LTR ERV1 449 635 0 2285 152 124 9 chr12 81420440 81420893 -62861596 - MLT1D LTR MaLR 0 505 1 633 188 32 34 chr12 81421126 81421260 -62861229 - MER58 DNA MER1_type -2 2418 2285 1855 131 33 0 chr12 81421260 81421561 -62860928 + AluSx SINE Alu 1 310 0 633 188 32 34 chr12 81421561 81421639 -62860850 - MER58 DNA MER1_type -135 2285 1 206 333 51 17 chr12 81421754 81421871 -62860618 + L2 LINE L2 2926 3046 -226 966 249 21 4 chr12 81422214 81422447 -62860042 + MIR SINE MIR 2 238 -24 1608 185 45 47 chr12 81423035 81423235 -62859254 + L1MA9 LINE L1 5861 6060 -252 1580 175 7 39 chr12 81423235 81423543 -62858946 - AluSx SINE Alu -12 300 3 1608 185 45 47 chr12 81423543 81423637 -62858852 + L1MA9 LINE L1 6060 6153 -159 276 77 0 0 chr12 81423637 81423676 -62858813 + (CA)n Simple_repeat Simple_repeat 2 40 0 1608 185 45 47 chr12 81423676 81423746 -62858743 + L1MA9 LINE L1 6153 6227 -85 1215 151 24 5 chr12 81423746 81423952 -62858537 - MER6B DNA MER2_type 0 210 1 1608 185 45 47 chr12 81423952 81424007 -62858482 + L1MA9 LINE L1 6227 6281 -31 22 35 0 0 chr12 81424335 81424364 -62858125 + AT_rich Low_complexity Low_complexity 1 29 0 239 328 0 0 chr12 81425039 81425106 -62857383 + L2 LINE L2 3010 3076 -196 811 180 34 45 chr12 81425137 81425315 -62857174 + MER58A DNA MER1_type 47 222 -2 200 229 0 21 chr12 81426535 81426546 -62855943 + (CAAT)n Simple_repeat Simple_repeat 2 12 -36 4302 103 18 9 chr12 81426546 81427176 -62855313 + MER41B LTR ERV1 1 635 0 200 229 0 21 chr12 81427176 81427212 -62855277 + (CAAT)n Simple_repeat Simple_repeat 12 48 0 880 148 172 19 chr12 81427652 81427861 -62854628 - MLT1D LTR MaLR 0 505 265 851 224 95 39 chr12 81428420 81428652 -62853837 - MIR SINE MIR 0 262 18 2438 54 0 3 chr12 81429145 81429441 -62853048 - AluY SINE Alu -16 295 1 198 173 67 93 chr12 81431949 81432024 -62850465 + L3 LINE CR1 626 698 -879 319 73 0 0 chr12 81432050 81432091 -62850398 + L1PA7 LINE L1 6103 6143 -11 225 0 0 0 chr12 81432417 81432442 -62850047 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 539 304 41 26 chr12 81433836 81434030 -62848459 - MIR SINE MIR -57 205 9 350 284 102 0 chr12 81434079 81434206 -62848283 + MIR SINE MIR 117 256 -6 565 247 19 12 chr12 81437010 81437183 -62845306 + MIR SINE MIR 47 222 -40 1941 153 7 7 chr12 81437524 81437832 -62844657 + AluJb SINE Alu 1 308 -4 454 293 113 29 chr12 81437913 81438152 -62844337 - MIR SINE MIR 0 262 4 1951 176 0 0 chr12 81438250 81438556 -62843933 + AluJb SINE Alu 1 306 -6 651 133 0 0 chr12 81438556 81438661 -62843828 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 1070 212 63 19 chr12 81438777 81439129 -62843360 + MLT1F1 LTR MaLR 172 567 0 980 220 38 8 chr12 81439265 81439501 -62842988 - MIR SINE MIR -3 259 17 274 222 17 76 chr12 81439659 81439770 -62842719 - MIR SINE MIR -27 181 97 334 380 7 0 chr12 81442102 81442252 -62840237 - MIR SINE MIR -4 258 108 1837 103 4 0 chr12 81443017 81443251 -62839238 - AluSp SINE Alu -78 235 1 306 73 0 0 chr12 81443269 81443310 -62839179 + (CA)n Simple_repeat Simple_repeat 2 42 0 1009 179 0 42 chr12 81443347 81443537 -62838952 + AluJo SINE Alu 1 182 -130 236 0 0 0 chr12 81444511 81444539 -62837950 + LTR7 LTR ERV1 1 28 -422 * 1537 73 5 9 chr12 81444537 81444757 -62837732 + LTR7 LTR ERV1 230 448 -2 2318 267 180 22 chr12 81446813 81447831 -62834658 + L2 LINE L2 615 1793 -1521 349 198 12 35 chr12 81447832 81447918 -62834571 + L2 LINE L2 1902 1985 -1329 1378 117 38 25 chr12 81447918 81448157 -62834332 + THE1B LTR MaLR 1 242 -122 1285 249 102 0 chr12 81448157 81448499 -62833990 + L2 LINE L2 2065 2441 -873 456 227 30 10 chr12 81448499 81448639 -62833850 - MLT1H LTR MaLR 0 549 410 325 316 6 63 chr12 81448693 81448867 -62833622 - MLT1H LTR MaLR -241 308 145 1661 287 35 46 chr12 81448992 81449886 -62832603 + L2 LINE L2 2437 3313 0 776 213 162 0 chr12 81452447 81452644 -62829845 + MIR SINE MIR 15 243 -19 4498 178 38 27 chr12 81452807 81453778 -62828711 + Tigger1 DNA MER2_type 3 984 -1434 200 232 0 36 chr12 81454315 81454371 -62828118 + L2 LINE L2 2932 2985 -328 211 250 100 0 chr12 81454678 81454738 -62827751 + MIR SINE MIR 87 152 -110 2672 86 19 6 chr12 81454738 81455097 -62827392 + THE1B LTR MaLR 1 364 0 11112 95 16 29 chr12 81455097 81456698 -62825791 + THE1B-int LTR MaLR 1 1580 0 2273 118 33 36 chr12 81456698 81457063 -62825426 + THE1B LTR MaLR 1 364 0 422 94 0 0 chr12 81457064 81457128 -62825361 + THE1B-int LTR MaLR 1517 1580 0 2310 137 22 6 chr12 81457128 81457486 -62825003 + THE1B LTR MaLR 1 364 0 329 261 99 35 chr12 81457575 81457717 -62824772 + Charlie8 DNA MER1_type 1 151 -2266 231 244 0 0 chr12 81457729 81457807 -62824682 + GA-rich Low_complexity Low_complexity 2 79 0 509 279 87 55 chr12 81457814 81458126 -62824363 + Charlie8 DNA MER1_type 175 496 -1921 286 265 0 0 chr12 81458127 81458195 -62824294 + Charlie8 DNA MER1_type 2345 2412 -5 262 239 138 55 chr12 81458202 81458311 -62824178 + L2 LINE L2 3191 3308 -5 1017 207 48 0 chr12 81458531 81458739 -62823750 - MER58A DNA MER1_type 0 224 7 209 347 0 25 chr12 81459388 81459509 -62822980 + GA-rich Low_complexity Low_complexity 2 119 0 7758 155 37 4 chr12 81460652 81462033 -62820456 - Tigger1 DNA MER2_type -4 2414 988 1005 164 103 65 chr12 81462153 81462370 -62820119 + MSTA LTR MaLR 157 387 -41 2034 139 0 3 chr12 81462370 81462679 -62819810 - AluSg SINE Alu -2 308 1 1005 164 103 65 chr12 81462679 81462723 -62819766 + MSTA LTR MaLR 387 428 0 24 32 0 0 chr12 81462732 81462763 -62819726 + AT_rich Low_complexity Low_complexity 1 31 0 1822 155 48 118 chr12 81463432 81463975 -62818514 + MLT1D LTR MaLR 1 505 0 324 317 75 50 chr12 81464331 81464492 -62817997 - MIR3 SINE MIR -1 207 43 990 229 50 23 chr12 81464913 81465131 -62817358 - MIR SINE MIR -8 254 31 182 336 60 60 chr12 81465136 81465252 -62817237 + L2 LINE L2 3126 3241 -31 472 259 35 116 chr12 81465253 81465512 -62816977 + MIR SINE MIR 2 239 -23 213 283 85 19 chr12 81465840 81465946 -62816543 - L3 LINE CR1 -323 1254 1142 260 338 60 53 chr12 81465973 81466124 -62816365 - L2 LINE L2 -44 3228 3077 2281 103 0 0 chr12 81466130 81466420 -62816069 - AluSp SINE Alu -23 290 1 181 224 17 35 chr12 81466694 81466752 -62815737 + L2 LINE L2 3216 3272 0 187 273 0 144 chr12 81467072 81467204 -62815285 + L2 LINE L2 2947 3059 -254 231 258 0 16 chr12 81467404 81467466 -62815023 + (CA)n Simple_repeat Simple_repeat 2 62 0 196 108 54 0 chr12 81467501 81467538 -62814951 + L2 LINE L2 3234 3272 0 2243 122 3 0 chr12 81467782 81468086 -62814403 + AluSx SINE Alu 1 305 -7 215 303 0 0 chr12 81468228 81468304 -62814185 + CT-rich Low_complexity Low_complexity 2 77 0 3019 192 71 59 chr12 81468304 81469544 -62812945 + L1MDa LINE L1 88 1597 -4943 241 307 38 42 chr12 81469751 81469963 -62812526 + L1ME LINE L1 5588 5798 -323 306 286 67 57 chr12 81470460 81470565 -62811924 - MIR SINE MIR 0 262 157 * 443 281 9 9 chr12 81470560 81470674 -62811815 - MIR SINE MIR -30 232 119 204 125 0 0 chr12 81471935 81471967 -62810522 + (GGGAGA)n Simple_repeat Simple_repeat 6 37 0 21 0 0 0 chr12 81473640 81473661 -62808828 + AT_rich Low_complexity Low_complexity 1 21 0 13721 143 21 5 chr12 81474166 81476508 -62805981 + Tigger1 DNA MER2_type 1 2380 -38 227 294 55 41 chr12 81476675 81476821 -62805668 - MLT1K LTR MaLR -7 581 434 2358 80 3 7 chr12 81476850 81477152 -62805337 + AluY SINE Alu 1 301 -10 859 313 45 12 chr12 81477202 81477538 -62804951 - MLT1K LTR MaLR -238 350 4 537 315 113 46 chr12 81479325 81479835 -62802654 + L2 LINE L2 2613 3184 -129 180 0 0 0 chr12 81479835 81479855 -62802634 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 537 315 113 46 chr12 81479855 81479945 -62802544 + L2 LINE L2 3184 3267 -46 270 271 215 0 chr12 81482745 81482852 -62799637 + MIR3 SINE MIR 76 205 -3 398 296 99 23 chr12 81484914 81485086 -62797403 - MER5A DNA MER1_type -3 186 2 412 260 88 44 chr12 81485147 81485328 -62797161 + MIR3 SINE MIR 6 194 -14 392 352 6 25 chr12 81487272 81487431 -62795058 + MIR3 SINE MIR 23 178 -30 256 295 98 17 chr12 81487454 81487627 -62794862 - MER117 DNA MER1_type -8 189 3 725 237 85 38 chr12 81487727 81487963 -62794526 + MIR SINE MIR 15 261 -1 216 161 48 81 chr12 81491164 81491226 -62791263 + L2 LINE L2 3160 3219 -94 871 254 47 5 chr12 81491234 81491447 -62791042 + MIR SINE MIR 3 224 -38 2072 116 27 0 chr12 81491478 81491772 -62790717 - AluSx SINE Alu -10 302 1 246 208 75 19 chr12 81491808 81491861 -62790628 + L2 LINE L2 3203 3258 -14 243 0 0 0 chr12 81491863 81491890 -62790599 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 2106 120 7 3 chr12 81492638 81492943 -62789546 + AluSq SINE Alu 1 306 0 203 299 158 55 chr12 81493073 81493140 -62789349 + L2 LINE L2 3173 3232 -81 1217 176 43 0 chr12 81493140 81493350 -62789139 - MER20 DNA MER1_type 0 219 1 203 299 158 55 chr12 81493350 81493409 -62789080 + L2 LINE L2 3232 3312 -1 260 309 111 12 chr12 81493448 81493529 -62788960 + MIR3 SINE MIR 2 90 -118 207 216 0 39 chr12 81493563 81493614 -62788875 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 859 280 58 60 chr12 81493614 81494251 -62788238 - L2 LINE L2 0 3313 2552 345 297 84 52 chr12 81494379 81494534 -62787955 - MIR3 SINE MIR -1 207 48 24 0 0 0 chr12 81495941 81495965 -62786524 + AT_rich Low_complexity Low_complexity 1 24 0 390 297 32 22 chr12 81497252 81497415 -62785074 - MIR SINE MIR -65 143 8 2591 57 0 16 chr12 81497807 81498123 -62784366 + AluY SINE Alu 1 311 0 2392 93 0 0 chr12 81498735 81499047 -62783442 + AluSx SINE Alu 1 312 0 397 285 126 59 chr12 81500781 81501210 -62781279 + L2 LINE L2 2714 3205 -67 357 24 0 0 chr12 81501210 81501252 -62781237 + (TTG)n Simple_repeat Simple_repeat 1 42 0 397 285 126 59 chr12 81501252 81501320 -62781169 + L2 LINE L2 3205 3267 -5 211 284 158 0 chr12 81503128 81503223 -62779266 - MIR SINE MIR 0 262 153 475 291 68 0 chr12 81503232 81503380 -62779109 + MIR SINE MIR 5 162 -100 240 324 103 28 chr12 81503404 81503549 -62778940 - MIR3 SINE MIR -50 158 3 266 336 53 18 chr12 81504679 81504792 -62777697 + MIR SINE MIR 30 146 -62 1042 214 47 51 chr12 81506105 81506269 -62776220 - MIR SINE MIR -5 257 93 2085 153 4 133 chr12 81506269 81506825 -62775664 + MER31A LTR ERV1 1 484 -1 1042 214 47 51 chr12 81506825 81506917 -62775572 - MIR SINE MIR -169 93 2 240 234 109 31 chr12 81507529 81507657 -62774832 + L1ME4a LINE L1 5968 6105 -16 324 225 101 22 chr12 81508175 81508313 -62774176 + L1ME4a LINE L1 5968 6116 -5 227 272 27 109 chr12 81509386 81509533 -62772956 - MIR SINE MIR -114 148 14 257 187 13 0 chr12 81511291 81511366 -62771123 + CT-rich Low_complexity Low_complexity 1 76 0 1357 154 29 11 chr12 81511481 81511761 -62770728 - L1MA7 LINE L1 -2 6289 6005 1983 108 34 0 chr12 81511989 81512258 -62770231 + AluSq SINE Alu 24 301 -12 489 283 164 0 chr12 81513132 81513284 -62769205 + MER5A DNA MER1_type 13 189 0 949 127 66 146 chr12 81513284 81513661 -62768828 + LTR37B LTR ERV1 113 459 -9 1192 194 73 53 chr12 81516366 81516722 -62765767 + MLT1D LTR MaLR 12 374 -131 186 133 0 0 chr12 81517084 81517114 -62765375 + (CA)n Simple_repeat Simple_repeat 1 30 0 2119 202 140 6 chr12 81517330 81517830 -62764659 + MLT1F1 LTR MaLR 1 567 0 863 278 65 43 chr12 81517851 81518380 -62764109 + Charlie8 DNA MER1_type 1 532 -1885 948 210 10 20 chr12 81518791 81518991 -62763498 + MER58A DNA MER1_type 4 201 -23 212 270 34 34 chr12 81519569 81519658 -62762831 - MIR SINE MIR -6 256 168 1047 171 63 5 chr12 81519699 81519904 -62762585 + MER58A DNA MER1_type 1 217 -7 198 259 19 0 chr12 81520895 81520949 -62761540 - MIR3 SINE MIR -48 160 106 319 280 19 138 chr12 81520955 81521165 -62761324 - MIR SINE MIR -13 249 74 1717 168 28 7 chr12 81521165 81521342 -62761147 - AluJo SINE Alu -20 292 105 240 35 0 0 chr12 81521342 81521371 -62761118 + (TGGGGG)n Simple_repeat Simple_repeat 3 31 0 1717 168 28 7 chr12 81521371 81521479 -62761010 - AluJo SINE Alu -207 105 1 319 280 19 138 chr12 81521479 81521529 -62760960 - MIR SINE MIR -188 74 20 499 236 97 18 chr12 81521681 81521846 -62760643 + MER5B DNA MER1_type 1 178 0 280 191 0 48 chr12 81522343 81522406 -62760083 - MIR SINE MIR -6 256 197 25 0 0 0 chr12 81523804 81523829 -62758660 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr12 81524658 81524679 -62757810 + (T)n Simple_repeat Simple_repeat 1 21 0 185 339 31 0 chr12 81524829 81524894 -62757595 - L2 LINE L2 -20 3293 3227 2417 146 34 7 chr12 81525062 81525479 -62757010 + MSTA LTR MaLR 1 428 0 229 269 213 28 chr12 81525571 81525658 -62756831 + MIR SINE MIR 2 72 -190 973 183 61 0 chr12 81525658 81525855 -62756634 + MER3 DNA MER1_type 1 209 0 229 269 213 28 chr12 81525855 81525908 -62756581 + MIR SINE MIR 72 168 -94 2262 90 0 10 chr12 81525913 81526213 -62756276 - AluSq SINE Alu -16 297 1 244 286 62 27 chr12 81526376 81526488 -62756001 + L2 LINE L2 3198 3313 0 470 186 0 0 chr12 81526635 81526721 -62755768 - AluS SINE Alu -226 86 1 200 260 40 0 chr12 81526927 81526977 -62755512 + MIR SINE MIR 201 252 -10 237 405 24 0 chr12 81527089 81527215 -62755274 + MIR SINE MIR 46 174 -88 181 229 0 0 chr12 81528103 81528138 -62754351 - MIR SINE MIR -145 117 83 192 375 68 0 chr12 81528262 81528350 -62754139 + L2 LINE L2 3157 3250 -22 2249 111 0 0 chr12 81528599 81528897 -62753592 + AluSg SINE Alu 1 298 -12 207 0 0 0 chr12 81528938 81528961 -62753528 + (CAA)n Simple_repeat Simple_repeat 2 24 0 762 258 48 5 chr12 81529030 81529239 -62753250 + MIR SINE MIR 12 229 -33 22 56 0 0 chr12 81729660 81729696 -62552793 + AT_rich Low_complexity Low_complexity 1 36 0 1350 136 41 0 chr12 81730066 81730287 -62552202 + MER30 DNA MER1_type 1 230 0 28 29 0 0 chr12 81730394 81730429 -62552060 + AT_rich Low_complexity Low_complexity 1 35 0 518 369 57 21 chr12 81730911 81731244 -62551245 + LTR16A LTR ERVL 56 400 -50 23 54 0 0 chr12 81731353 81731390 -62551099 + AT_rich Low_complexity Low_complexity 1 37 0 2915 112 4 11 chr12 81731395 81731858 -62550631 - L1PA4 LINE L1 -3 6152 5693 389 279 7 7 chr12 81732400 81732547 -62549942 - L1MA10 LINE L1 -14 6320 6174 570 230 37 0 chr12 81732563 81732698 -62549791 - L1MEc LINE L1 -4339 2057 1918 560 240 97 0 chr12 81732734 81732930 -62549559 - L1MEc LINE L1 -3451 2764 2550 1086 312 37 9 chr12 81732946 81733376 -62549113 - L1MEc LINE L1 -5920 476 35 189 74 0 0 chr12 81733965 81733992 -62548497 + (TG)n Simple_repeat Simple_repeat 1 27 0 625 172 70 0 chr12 81734117 81734245 -62548244 - L1MB1 LINE L1 -2 6166 6030 291 326 122 6 chr12 81736410 81736582 -62545907 - MIR SINE MIR -42 220 29 39 84 0 0 chr12 81736712 81736807 -62545682 + AT_rich Low_complexity Low_complexity 1 95 0 3465 173 16 10 chr12 81737506 81738543 -62543946 - L1P4 LINE L1 -342 5824 4787 255 159 0 0 chr12 81738542 81738586 -62543903 + L1P LINE L1 3737 3780 -2366 * 291 115 19 19 chr12 81738571 81738623 -62543866 + L1M1 LINE L1 5807 5858 -446 981 126 107 0 chr12 81738723 81738882 -62543607 - THE1B LTR MaLR -188 176 1 1764 274 70 28 chr12 81738888 81739909 -62542580 + L1M4 LINE L1 4229 5291 -855 795 255 67 4 chr12 81740085 81740352 -62542137 - L1MC3 LINE L1 -1369 6416 6133 970 264 113 36 chr12 81740416 81741032 -62541457 - L1MEc LINE L1 -4023 2209 1634 562 78 0 44 chr12 81741032 81741122 -62541367 - L1PA3 LINE L1 -1 6154 6069 970 264 113 36 chr12 81741122 81741260 -62541229 - L1MEc LINE L1 -4598 1634 1508 9302 31 1 3 chr12 81741603 81743491 -62538998 - L1PA3 LINE L1 -3 6152 4261 1471 94 5 0 chr12 81743616 81743808 -62538681 - AluSp SINE Alu -120 193 1 186 43 0 0 chr12 81743816 81743839 -62538650 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1149 248 84 63 chr12 81743989 81744513 -62537976 - MLT1H LTR MaLR -2 547 13 257 68 23 0 chr12 81744588 81744632 -62537857 + (TA)n Simple_repeat Simple_repeat 2 46 0 2125 130 0 0 chr12 81744636 81744928 -62537561 - AluSx SINE Alu -20 292 1 270 303 210 23 chr12 81745479 81745865 -62536624 - L2 LINE L2 -910 2404 1947 22 0 0 0 chr12 81747193 81747215 -62535274 + AT_rich Low_complexity Low_complexity 1 22 0 222 313 12 36 chr12 81747332 81747415 -62535074 - L2 LINE L2 -6 3307 3227 695 264 16 21 chr12 81747421 81747614 -62534875 + MLT1A1 LTR MaLR 174 365 0 1743 116 8 8 chr12 81747823 81748090 -62534399 + AluY SINE Alu 30 296 -15 472 182 9 18 chr12 81748103 81748213 -62534276 + Ricksha DNA DNA 3135 3243 -8 202 283 20 20 chr12 81748471 81748570 -62533919 + (CATA)n Simple_repeat Simple_repeat 2 100 0 488 181 282 23 chr12 81748836 81749052 -62533437 - MER4C LTR ERV1 -18 447 176 1462 168 55 16 chr12 81749133 81749442 -62533047 - MER4A LTR ERV1 -341 323 3 220 267 174 0 chr12 81751692 81751778 -62530711 - MIR SINE MIR -114 148 48 438 276 24 32 chr12 81751946 81752069 -62530420 + MIR SINE MIR 23 144 -64 2244 110 0 0 chr12 81752186 81752485 -62530004 - AluSx SINE Alu -8 304 6 589 168 37 0 chr12 81753086 81753193 -62529296 + FLAM_A SINE Alu 22 132 -10 893 148 0 0 chr12 81753554 81753689 -62528800 - Tigger2 DNA MER2_type -2583 135 1 2138 107 7 3 chr12 81754075 81754373 -62528116 + AluSx SINE Alu 1 299 -13 4453 129 11 11 chr12 81754628 81755328 -62527161 + L1PA15 LINE L1 5464 6163 -2 35 24 0 0 chr12 81755638 81755680 -62526809 + AT_rich Low_complexity Low_complexity 1 42 0 950 134 0 0 chr12 81755680 81755807 -62526682 - FLAM_C SINE Alu -16 127 1 804 180 0 0 chr12 81755808 81755947 -62526542 + LTR24C LTR ERV1 497 635 0 2377 100 0 0 chr12 81756235 81756536 -62525953 + AluSq SINE Alu 1 301 -12 557 121 24 0 chr12 81757235 81757318 -62525171 - FAM SINE Alu -13 172 88 956 113 15 0 chr12 81757426 81757559 -62524930 + AluSg/x SINE Alu 161 295 -15 2381 131 23 56 chr12 81757786 81758156 -62524333 + Tigger2a DNA MER2_type 1 357 -2351 1946 135 6 41 chr12 81758156 81758474 -62524015 - AluSx SINE Alu -5 307 1 2381 131 23 56 chr12 81758474 81758530 -62523959 + Tigger2a DNA MER2_type 357 413 -21 208 326 174 0 chr12 81758604 81758690 -62523799 - L2 LINE L2 0 3313 3213 664 155 9 9 chr12 81758766 81758882 -62523607 + FLAM_C SINE Alu 1 116 -17 31 0 0 0 chr12 81758889 81758920 -62523569 + AT_rich Low_complexity Low_complexity 1 31 0 229 186 134 0 chr12 81759068 81759165 -62523324 + L1M4 LINE L1 5322 5431 -881 227 150 33 33 chr12 81759653 81759713 -62522776 + A-rich Low_complexity Low_complexity 1 60 0 25 0 0 0 chr12 81759918 81759943 -62522546 + AT_rich Low_complexity Low_complexity 1 25 0 1114 152 6 0 chr12 81759943 81760107 -62522382 - AluSg/x SINE Alu -21 291 127 258 211 202 0 chr12 81760266 81760376 -62522113 + L1M4 LINE L1 5679 5810 -364 239 313 0 0 chr12 81760386 81760466 -62522023 - MIR SINE MIR 0 262 183 * 294 276 13 0 chr12 81760465 81760541 -62521948 + MIR SINE MIR 173 249 -13 318 200 15 0 chr12 81760617 81760682 -62521807 - MIR SINE MIR -108 154 89 324 94 0 0 chr12 81761314 81761367 -62521122 + (TG)n Simple_repeat Simple_repeat 2 54 0 1560 112 5 18 chr12 81761924 81762147 -62520342 + AluSg/x SINE Alu 69 288 -22 2181 129 0 3 chr12 81763015 81763324 -62519165 + AluSx SINE Alu 5 312 0 191 299 46 11 chr12 81764022 81764109 -62518380 + MIR SINE MIR 173 262 0 26 50 0 0 chr12 81764202 81764242 -62518247 + AT_rich Low_complexity Low_complexity 1 40 0 1262 284 46 79 chr12 81764250 81764856 -62517633 - MLT1K LTR MaLR -2 586 1 2542 66 0 0 chr12 81764981 81765282 -62517207 + AluY SINE Alu 1 301 -10 2004 178 7 67 chr12 81765435 81765856 -62516633 - MSTD LTR MaLR 0 396 1 259 266 96 32 chr12 81766662 81766756 -62515733 + MER5A DNA MER1_type 36 135 -54 * 391 211 121 117 chr12 81766752 81766975 -62515514 - MIR SINE MIR -32 230 7 31 0 0 0 chr12 81767021 81767052 -62515437 + AT_rich Low_complexity Low_complexity 1 31 0 675 142 52 32 chr12 81767104 81767259 -62515230 - L1MC3 LINE L1 0 7785 7628 245 376 16 8 chr12 81767260 81767385 -62515104 + MIR SINE MIR 32 157 -105 1746 141 40 7 chr12 81767393 81767669 -62514820 + AluSx SINE Alu 1 285 -27 2006 80 63 53 chr12 81768443 81768744 -62513745 + AluSq SINE Alu 5 308 -5 1723 139 61 41 chr12 81769623 81769918 -62512571 + AluJb SINE Alu 1 301 -11 428 52 0 0 chr12 81769945 81770003 -62512486 - AluSp/q SINE Alu -15 298 241 243 173 0 0 chr12 81770189 81770241 -62512248 + (CA)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chr12 81770292 81770313 -62512176 + AT_rich Low_complexity Low_complexity 1 21 0 3864 54 8 10 chr12 81770313 81770816 -62511673 - L1PA5 LINE L1 0 6154 5653 1077 159 56 98 chr12 81770819 81771178 -62511311 - L1MC5 LINE L1 -934 7027 6684 2779 147 25 8 chr12 81772143 81772877 -62509612 + L1PBb LINE L1 1241 1988 -4875 749 241 47 36 chr12 81772898 81773292 -62509197 + L1PBb LINE L1 2671 3118 -3744 366 218 371 0 chr12 81776616 81776740 -62505749 - MIR SINE MIR -2 260 91 400 303 36 48 chr12 81777257 81777422 -62505067 - MIR3 SINE MIR -11 197 35 207 0 0 0 chr12 81778228 81778251 -62504238 + (TGAG)n Simple_repeat Simple_repeat 3 25 0 785 293 31 39 chr12 81778465 81778820 -62503669 - L1ME3A LINE L1 -213 5951 5600 748 259 9 0 chr12 81781465 81781681 -62500808 + L1 LINE L1 2849 3066 -3080 2087 168 39 20 chr12 81781682 81782039 -62500450 + THE1B LTR MaLR 1 364 0 12304 96 8 3 chr12 81782039 81783611 -62498878 + THE1B-int LTR MaLR 1 1580 0 1464 146 182 49 chr12 81783621 81783929 -62498560 + THE1B LTR MaLR 16 364 0 4950 207 23 14 chr12 81783930 81785063 -62497426 + L1 LINE L1 3064 4206 -1940 12560 112 5 8 chr12 81785163 81787036 -62495453 + HERVH LTR ERV1 2127 3993 -3720 7165 117 21 7 chr12 81787019 81788106 -62494383 + HERVH LTR ERV1 3993 5286 -1805 * 2903 111 5 11 chr12 81788109 81788543 -62493946 + HERVH LTR ERV1 7283 7713 0 2314 114 119 24 chr12 81788543 81788954 -62493535 + LTR7 LTR ERV1 1 450 0 1433 144 0 5 chr12 81788956 81789164 -62493325 - AluJb SINE Alu -105 207 1 1037 171 32 95 chr12 81789568 81789716 -62492773 - Tigger2 DNA MER2_type 0 2718 2591 2070 139 0 0 chr12 81789716 81790011 -62492478 - AluSx SINE Alu -17 295 1 1037 171 32 95 chr12 81790011 81790114 -62492375 - Tigger2 DNA MER2_type -127 2591 2483 44 20 0 0 chr12 81791156 81791207 -62491282 + AT_rich Low_complexity Low_complexity 1 51 0 872 274 22 33 chr12 81791344 81791618 -62490871 + L2 LINE L2 576 846 -2468 1140 162 30 25 chr12 81791624 81791822 -62490667 - AluJo SINE Alu -23 289 91 923 253 175 28 chr12 81791828 81791995 -62490494 + L2 LINE L2 836 977 -2337 639 217 83 13 chr12 81791995 81792152 -62490337 + MER96 DNA MER1_type 5 172 -3 923 253 175 28 chr12 81792152 81792377 -62490112 + L2 LINE L2 977 1286 -2028 282 188 0 0 chr12 81792377 81792425 -62490064 + MER5A DNA MER1_type 1 48 -141 967 154 20 67 chr12 81792426 81792621 -62489868 - THE1C LTR MaLR 0 375 190 776 200 14 7 chr12 81792624 81792769 -62489720 + MER5A DNA MER1_type 43 188 -1 * 2819 271 141 28 chr12 81792769 81792876 -62489613 + L2 LINE L2 1278 1371 -1943 1740 165 26 26 chr12 81792876 81793179 -62489310 - AluJo SINE Alu -9 303 1 2819 271 141 28 chr12 81793179 81793732 -62488757 + L2 LINE L2 1371 1860 -1454 1521 153 55 126 chr12 81793732 81794136 -62488353 + THE1C LTR MaLR 1 375 0 2819 271 141 28 chr12 81794136 81794808 -62487681 + L2 LINE L2 1860 2762 -552 4398 130 13 5 chr12 81794910 81795539 -62486950 - MER41B LTR ERV1 0 635 2 333 274 147 0 chr12 81795540 81795635 -62486854 + L2 LINE L2 2942 3050 -263 690 284 99 55 chr12 81795711 81796187 -62486302 + MLT1J LTR MaLR 8 504 -7 31 44 0 0 chr12 81796241 81796286 -62486203 + AT_rich Low_complexity Low_complexity 1 45 0 3513 149 101 41 chr12 81796546 81797232 -62485257 + LTR8A LTR ERV1 1 727 0 1743 136 15 97 chr12 81797400 81797576 -62484913 - AluJb SINE Alu -9 303 165 2252 115 3 3 chr12 81797576 81797889 -62484600 - AluSq SINE Alu 0 313 1 1743 136 15 97 chr12 81797889 81798042 -62484447 - AluJb SINE Alu -147 165 1 415 248 30 0 chr12 81798139 81798240 -62484249 - Tigger1 DNA MER2_type -1 2417 2314 4139 185 83 5 chr12 81798348 81799207 -62483282 - L1MA7 LINE L1 -5 6286 5361 1335 196 5 5 chr12 81800094 81800318 -62482171 - MER58A DNA MER1_type 0 224 1 216 368 39 22 chr12 81800544 81800726 -62481763 - L2 LINE L2 -584 2730 2546 195 42 0 0 chr12 81800924 81800948 -62481541 + (TTCTC)n Simple_repeat Simple_repeat 2 25 0 352 320 0 69 chr12 81800948 81801123 -62481366 + L2 LINE L2 2148 2310 -1004 1646 208 75 41 chr12 81801173 81801533 -62480956 - LTR40c LTR ERVL -12 453 74 1995 148 0 0 chr12 81801533 81801830 -62480659 + AluSx SINE Alu 1 297 -15 1646 208 75 41 chr12 81801830 81801907 -62480582 - LTR40c LTR ERVL -391 74 1 258 300 79 36 chr12 81801907 81802047 -62480442 + L2 LINE L2 2337 2482 -832 811 201 0 7 chr12 81802080 81802219 -62480270 + FLAM_A SINE Alu 1 138 -4 1164 247 145 24 chr12 81802221 81802642 -62479847 - MLT1D LTR MaLR -33 472 1 255 270 0 14 chr12 81802699 81802773 -62479716 - L2 LINE L2 -1072 2242 2170 2275 95 7 0 chr12 81802824 81803120 -62479369 - AluSg SINE Alu -12 298 1 35 16 0 49 chr12 81803123 81803149 -62479340 + AT_rich Low_complexity Low_complexity 1 27 -31 807 137 8 8 chr12 81803149 81803266 -62479223 + FLAM_C SINE Alu 1 117 -16 35 16 0 49 chr12 81803266 81803300 -62479189 + AT_rich Low_complexity Low_complexity 27 58 0 388 308 69 0 chr12 81803300 81803430 -62479059 - MIR SINE MIR -76 186 48 2281 75 0 0 chr12 81804062 81804340 -62478149 + AluY SINE Alu 15 292 -19 351 0 0 0 chr12 81804340 81804379 -62478110 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 12860 75 24 2 chr12 81804381 81806814 -62475675 - L1PA3 LINE L1 -12 6143 3670 2223 137 14 20 chr12 81807121 81807478 -62475011 + THE1A LTR MaLR 1 355 0 11863 82 7 11 chr12 81807484 81809049 -62473440 + THE1A-int LTR MaLR 16 1574 -6 669 67 11 22 chr12 81809054 81809144 -62473345 + THE1A LTR MaLR 1 89 -275 * 2078 142 9 3 chr12 81809143 81809467 -62473022 + THE1A LTR MaLR 30 355 0 2157 136 0 7 chr12 81810552 81810861 -62471628 + AluSx SINE Alu 1 307 -5 363 315 60 13 chr12 81811506 81811655 -62470834 - MIR SINE MIR -104 158 3 406 172 203 23 chr12 81811673 81811801 -62470688 - MIR SINE MIR -11 251 101 263 292 115 8 chr12 81817389 81817519 -62464970 - MIR SINE MIR -52 210 67 236 67 0 0 chr12 81818152 81818182 -62464307 + MER41B LTR ERV1 2 31 -604 4539 68 22 2 chr12 81818198 81818740 -62463749 + MER41A LTR ERV1 2 554 0 228 250 42 0 chr12 81818748 81818796 -62463693 - L2 LINE L2 -13 3300 3251 1941 142 7 0 chr12 81818881 81819170 -62463319 - AluSx SINE Alu -21 291 1 298 236 170 9 chr12 81819176 81819282 -62463207 - MIR SINE MIR -122 140 18 1440 184 57 7 chr12 81819296 81819579 -62462910 + AluJo SINE Alu 1 297 -15 1928 128 3 3 chr12 81819686 81819968 -62462521 + AluSx SINE Alu 7 288 -24 198 111 19 37 chr12 81824058 81824112 -62458377 + (TTTTTA)n Simple_repeat Simple_repeat 3 55 0 187 333 52 31 chr12 81824178 81824274 -62458215 + L2 LINE L2 3170 3267 -5 26 50 0 0 chr12 81824398 81824438 -62458051 + AT_rich Low_complexity Low_complexity 1 40 0 198 378 126 36 chr12 81824715 81824826 -62457663 + L2 LINE L2 3148 3268 -4 770 262 24 0 chr12 81825347 81825515 -62456974 - MLT1G1 LTR MaLR -423 172 1 236 228 101 25 chr12 81825904 81825983 -62456506 + L1MC/D LINE L1 5659 5743 -2065 1360 256 108 6 chr12 81826713 81827205 -62455284 + L2 LINE L2 2097 2638 -676 373 245 29 29 chr12 81827334 81827436 -62455053 - L1MC4 LINE L1 -144 7898 7797 555 315 54 0 chr12 81827436 81827620 -62454869 + L2 LINE L2 2692 2885 -429 777 301 71 64 chr12 81827623 81827690 -62454799 - MLT1I LTR MaLR 0 409 344 750 209 0 8 chr12 81827690 81827824 -62454665 + FLAM_A SINE Alu 1 133 0 777 301 71 64 chr12 81827824 81828148 -62454341 - MLT1I LTR MaLR -65 344 15 892 293 75 47 chr12 81828156 81828580 -62453909 + L2 LINE L2 2877 3312 -1 665 284 38 6 chr12 81829749 81829932 -62452557 + MIR SINE MIR 3 191 -71 2932 87 25 5 chr12 81829951 81830343 -62452146 + MLT2A1 LTR ERVL 1 400 -44 240 100 0 0 chr12 81830375 81830415 -62452074 + (TA)n Simple_repeat Simple_repeat 1 40 0 266 53 70 105 chr12 81830415 81830472 -62452017 + MLT2A1 LTR ERVL 399 453 0 193 214 0 24 chr12 81830473 81830515 -62451974 + L2 LINE L2 3251 3291 -22 1388 240 51 35 chr12 81830710 81831085 -62451404 + MLT1G1 LTR MaLR 37 417 -178 830 178 134 20 chr12 81832222 81832424 -62450065 - AluJb SINE Alu -26 286 62 459 277 46 15 chr12 81833698 81833828 -62448661 + MIR SINE MIR 3 136 -126 1429 193 140 23 chr12 81833837 81834150 -62448339 - MLT1F LTR MaLR -11 531 256 2165 102 10 0 chr12 81834150 81834444 -62448045 - AluSx SINE Alu -15 297 1 1429 193 140 23 chr12 81834444 81834456 -62448033 - MLT1F LTR MaLR -286 256 247 2156 122 0 3 chr12 81834456 81834759 -62447730 - AluSx SINE Alu -8 304 3 1429 193 140 23 chr12 81834759 81834915 -62447574 - MLT1F LTR MaLR -295 247 3 546 321 99 73 chr12 81835011 81835394 -62447095 - L2 LINE L2 -18 3254 2862 2816 90 3 3 chr12 81835417 81835772 -62446717 - THE1A LTR MaLR 0 355 1 871 244 18 5 chr12 81835854 81836074 -62446415 + L1ME1 LINE L1 5962 6184 0 189 0 0 0 chr12 81836264 81836285 -62446204 + (TG)n Simple_repeat Simple_repeat 2 22 0 236 213 0 0 chr12 81836749 81836796 -62445693 - L1ME LINE L1 -354 5808 5762 * 1109 242 100 30 chr12 81836793 81837132 -62445357 + L1ME3A LINE L1 5801 6163 -7 4109 185 83 6 chr12 81837316 81838176 -62444313 - L1MA7 LINE L1 -5 6286 5361 1173 212 14 5 chr12 81839063 81839285 -62443204 - MER58A DNA MER1_type 0 224 1 3376 162 15 28 chr12 81839464 81840112 -62442377 - HERVH LTR ERV1 -6273 1440 801 2019 177 54 25 chr12 81840172 81840618 -62441871 - HERVH LTR ERV1 -7254 459 1 2312 113 128 25 chr12 81840618 81841026 -62441463 - LTR7 LTR ERV1 0 450 1 669 154 0 18 chr12 81841026 81841136 -62441353 + AluJb SINE Alu 205 312 0 2054 126 7 17 chr12 81841891 81842193 -62440296 - AluSx SINE Alu -13 299 1 225 94 0 0 chr12 81842198 81842230 -62440259 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 323 286 77 144 chr12 81842236 81842652 -62439837 - L2 LINE L2 -23 3249 2862 473 302 17 11 chr12 81842708 81842887 -62439602 + MIR SINE MIR 83 262 0 375 303 28 21 chr12 81843122 81843264 -62439225 - L2 LINE L2 -452 2862 2720 3981 160 55 55 chr12 81844280 81845174 -62437315 + L1MA9 LINE L1 5397 6290 -22 278 341 14 29 chr12 81845201 81845339 -62437150 - MIR3 SINE MIR -48 160 25 209 260 26 13 chr12 81845406 81845483 -62437006 - MIR SINE MIR -6 256 179 180 200 0 0 chr12 81845485 81845525 -62436964 + (CA)n Simple_repeat Simple_repeat 1 40 0 224 207 35 11 chr12 81845549 81845636 -62436853 + CT-rich Low_complexity Low_complexity 4 92 0 311 311 106 48 chr12 81846136 81846515 -62435974 + L2 LINE L2 2373 2773 -541 308 264 56 42 chr12 81847256 81847400 -62435089 + MER5A DNA MER1_type 6 151 -38 420 191 0 0 chr12 81848537 81848621 -62433868 + CT-rich Low_complexity Low_complexity 3 86 0 843 256 80 4 chr12 81849259 81849533 -62432956 + MER46C DNA MER2_type 2 296 -42 223 299 136 52 chr12 81849598 81849752 -62432737 - MIR SINE MIR -59 203 37 194 299 58 11 chr12 81849764 81849851 -62432638 - MIR3 SINE MIR -35 173 93 267 285 139 56 chr12 81850022 81850166 -62432323 + L2 LINE L2 3117 3272 0 2291 102 0 0 chr12 81850709 81851002 -62431487 - AluSx SINE Alu -19 293 1 2322 148 77 5 chr12 81851545 81851852 -62430637 - Tigger2a DNA MER2_type -2275 433 89 198 0 0 0 chr12 81851852 81851874 -62430615 + (GGA)n Simple_repeat Simple_repeat 3 24 0 2322 148 77 5 chr12 81851874 81851970 -62430519 - Tigger2a DNA MER2_type -2619 89 1 1593 188 48 36 chr12 81853091 81853447 -62429042 - MLT1A1 LTR MaLR -5 360 1 388 247 72 82 chr12 81854719 81854913 -62427576 + MER117 DNA MER1_type 6 197 0 271 338 78 40 chr12 81855241 81855537 -62426952 - L2 LINE L2 -611 2703 2397 558 239 157 101 chr12 81856257 81856672 -62425817 - MLT1H1 LTR MaLR -39 516 79 390 328 105 16 chr12 81857078 81857325 -62425164 - L2 LINE L2 -470 2844 2576 1938 163 10 0 chr12 81858684 81858991 -62423498 + AluJo SINE Alu 1 310 -2 225 244 0 0 chr12 81859039 81859084 -62423405 - Zaphod DNA AcHobo -3985 46 2 23 0 0 0 chr12 81859198 81859221 -62423268 + AT_rich Low_complexity Low_complexity 1 23 0 263 117 10 19 chr12 81859525 81859733 -62422756 + AluSq SINE Alu 1 292 -9 207 179 36 18 chr12 81859915 81859971 -62422518 + GA-rich Low_complexity Low_complexity 4 60 0 201 233 0 17 chr12 81860841 81860901 -62421588 + L2 LINE L2 2989 3047 -225 974 232 77 37 chr12 81861143 81861301 -62421188 - L1M4 LINE L1 -763 5383 5233 1849 167 0 37 chr12 81861301 81861624 -62420865 - AluSx SINE Alu -1 311 1 974 232 77 37 chr12 81861624 81861840 -62420649 - L1M4 LINE L1 -913 5233 4994 1449 169 15 33 chr12 81862005 81862277 -62420212 + AluJb SINE Alu 1 267 -45 232 320 39 19 chr12 81862402 81862505 -62419984 + MIR SINE MIR 51 155 -107 320 343 189 0 chr12 81862520 81862695 -62419794 - MIR SINE MIR -24 238 31 209 281 0 0 chr12 81862761 81862825 -62419664 + MIR SINE MIR 186 249 -13 1154 295 80 31 chr12 81863088 81863614 -62418875 - L2 LINE L2 -2 3311 2758 410 260 75 27 chr12 81863616 81863762 -62418727 + MIR SINE MIR 2 154 -108 822 145 0 43 chr12 81863942 81864080 -62418409 - FLAM_C SINE Alu -1 132 1 375 280 0 20 chr12 81865885 81865985 -62416504 + MER46C DNA MER2_type 1 98 -240 511 328 79 32 chr12 81866100 81866478 -62416011 + Tigger4(Zombi) DNA MER2_type 426 821 -1910 * 1500 166 18 77 chr12 81866477 81866814 -62415675 - MLT2C1 LTR ERVL -80 317 1 29 28 0 0 chr12 81866944 81866980 -62415509 + AT_rich Low_complexity Low_complexity 1 36 0 334 155 27 80 chr12 81866980 81867167 -62415322 + (TTAA)n Simple_repeat Simple_repeat 3 179 0 542 340 74 51 chr12 81867217 81867421 -62415068 + Tigger4(Zombi) DNA MER2_type 895 1093 -1638 2279 106 0 0 chr12 81867421 81867714 -62414775 - AluSg SINE Alu -17 293 1 542 340 74 51 chr12 81867714 81868652 -62413837 + Tigger4(Zombi) DNA MER2_type 1093 2064 -667 36 0 0 0 chr12 81868658 81868694 -62413795 + AT_rich Low_complexity Low_complexity 1 36 0 1323 167 49 38 chr12 81868726 81868990 -62413499 - MLT2B1 LTR ERVL -253 267 1 397 109 78 0 chr12 81868990 81869045 -62413444 - MLT1A2 LTR MaLR -314 60 1 434 252 24 8 chr12 81869046 81869173 -62413316 + MER46C DNA MER2_type 209 337 -1 541 272 7 0 chr12 81869548 81869684 -62412805 + MIR SINE MIR 126 262 0 4437 145 35 38 chr12 81869729 81869964 -62412525 + L1 LINE L1 4190 4424 -1722 1853 171 20 0 chr12 81869964 81870263 -62412226 + AluJo SINE Alu 3 307 -5 4437 145 35 38 chr12 81870263 81870889 -62411600 + L1 LINE L1 4424 5048 -1098 298 233 0 68 chr12 81871269 81871342 -62411147 + MER21B LTR ERV1 178 245 -618 2232 89 4 0 chr12 81871361 81871641 -62410848 + AluSx SINE Alu 17 297 -15 586 161 0 0 chr12 81871648 81871741 -62410748 - MLT1A1 LTR MaLR 0 365 273 1702 122 0 0 chr12 81871741 81871970 -62410519 + AluSg/x SINE Alu 74 302 -10 1822 190 118 0 chr12 81871970 81872401 -62410088 + LTR54B LTR ERV1 15 496 -2 499 164 55 18 chr12 81873087 81873197 -62409292 + Charlie5 DNA MER1_type 2472 2585 -27 2058 119 34 3 chr12 81873976 81874269 -62408220 + AluSq SINE Alu 1 302 -11 911 139 23 0 chr12 81874613 81874742 -62407747 + AluJo/FLAM SINE Alu 2 133 -169 2335 86 10 3 chr12 81874743 81875046 -62407443 + AluY SINE Alu 1 305 -6 858 222 155 10 chr12 81875079 81875273 -62407216 - AluJo SINE Alu -84 228 7 39 22 0 0 chr12 81875319 81875365 -62407124 + AT_rich Low_complexity Low_complexity 1 46 0 351 0 0 0 chr12 81875426 81875465 -62407024 + (TG)n Simple_repeat Simple_repeat 2 40 0 1167 227 89 49 chr12 81875505 81876120 -62406369 - MER21B LTR ERV1 -111 752 55 406 303 18 9 chr12 81876290 81876399 -62406090 - MER5A DNA MER1_type -72 117 8 1276 184 9 27 chr12 81876691 81876914 -62405575 - MER20 DNA MER1_type 0 219 1 1320 142 13 62 chr12 81878246 81878472 -62404017 + MER1B DNA MER1_type 3 217 -80 1212 126 6 0 chr12 81878472 81878647 -62403842 - AluSq SINE Alu -17 296 121 876 85 69 31 chr12 81878647 81878777 -62403712 + MER1B DNA MER1_type 205 339 0 23 33 0 0 chr12 81878939 81878969 -62403520 + AT_rich Low_complexity Low_complexity 1 30 0 419 263 94 0 chr12 81878969 81879129 -62403360 - L1MC4a LINE L1 -1933 5875 5701 2224 107 10 0 chr12 81879330 81879619 -62402870 - AluSx SINE Alu -20 292 1 1796 111 100 4 chr12 81880692 81880962 -62401527 + AluSx SINE Alu 13 308 -4 353 302 40 32 chr12 81881649 81881775 -62400714 + L2 LINE L2 3137 3263 -9 233 264 0 0 chr12 81881817 81881870 -62400619 - MIR SINE MIR -9 253 201 505 247 123 0 chr12 81881912 81882066 -62400423 + L3 LINE CR1 1299 1471 -106 599 172 37 37 chr12 81882346 81882480 -62400009 - Charlie8 DNA MER1_type -2189 228 95 1298 63 0 0 chr12 81882510 81882668 -62399821 - L1PA6 LINE L1 0 6154 5997 207 0 0 0 chr12 81883557 81883580 -62398909 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 941 219 117 91 chr12 81883849 81884175 -62398314 - MER34C LTR ERV1 -23 562 181 1539 78 122 0 chr12 81884175 81884380 -62398109 + MER30 DNA MER1_type 1 230 0 941 219 117 91 chr12 81884380 81884559 -62397930 - MER34C LTR ERV1 -404 181 8 1658 225 50 69 chr12 81884592 81884732 -62397757 + LTR40a LTR ERVL 10 151 -368 2288 105 7 0 chr12 81884732 81885036 -62397453 - AluSq SINE Alu -7 306 1 1658 225 50 69 chr12 81885036 81885414 -62397075 + LTR40a LTR ERVL 151 518 -1 471 321 63 16 chr12 81885438 81885690 -62396799 + ERVL LTR ERVL 5000 5263 -501 403 322 90 8 chr12 81885726 81885992 -62396497 - LTR33A LTR ERVL -14 684 302 415 275 107 24 chr12 81886399 81886488 -62396001 + LTR33A LTR ERVL 78 158 -365 1374 210 31 86 chr12 81886488 81886874 -62395615 + MLT1A1 LTR MaLR 1 365 0 415 275 107 24 chr12 81886874 81887289 -62395200 + LTR33A LTR ERVL 158 513 -10 237 213 45 104 chr12 81887507 81887545 -62394944 - L1MDa LINE L1 -3890 2650 2611 1989 113 0 34 chr12 81887545 81887868 -62394621 - AluY SINE Alu 0 313 1 237 213 45 104 chr12 81887868 81888049 -62394440 - L1MDa LINE L1 -3929 2611 2443 2003 162 9 29 chr12 81888646 81888846 -62393643 + MER1B DNA MER1_type 1 193 -2519 2300 104 0 0 chr12 81888846 81889145 -62393344 - AluSx SINE Alu -13 299 1 2003 162 9 29 chr12 81889145 81889290 -62393199 + MER1B DNA MER1_type 193 339 0 317 270 183 0 chr12 81889309 81889424 -62393065 + L2 LINE L2 3176 3311 -2 1080 184 42 18 chr12 81890245 81890462 -62392027 - MLT1A1 LTR MaLR 0 365 144 181 57 57 0 chr12 81890477 81890512 -62391977 + (TA)n Simple_repeat Simple_repeat 1 37 0 309 231 57 31 chr12 81890547 81890698 -62391791 - L1MC4 LINE L1 -1323 6719 6614 182 114 0 29 chr12 81890700 81890735 -62391754 + (TA)n Simple_repeat Simple_repeat 1 34 0 342 255 85 9 chr12 81890735 81890841 -62391648 + L1MC4 LINE L1 6588 6701 -1341 280 132 0 0 chr12 81890841 81890879 -62391610 - Alu SINE Alu -264 38 1 757 140 6 117 chr12 81890883 81891054 -62391435 - MLT1A1 LTR MaLR -213 152 1 332 274 53 9 chr12 81891336 81891449 -62391040 - L3 LINE CR1 -628 949 832 3257 115 67 53 chr12 81891820 81892404 -62390085 - LTR14B LTR ERVK 0 608 17 1680 173 0 27 chr12 81892672 81892972 -62389517 - AluJo SINE Alu -20 292 1 1932 198 6 6 chr12 81893059 81893402 -62389087 + MLT1A1 LTR MaLR 23 365 0 2909 182 66 28 chr12 81894038 81894393 -62388096 + L1MD2 LINE L1 5679 6072 -287 2033 132 0 43 chr12 81894393 81894719 -62387770 + AluSx SINE Alu 1 312 0 2909 182 66 28 chr12 81894719 81895016 -62387473 + L1MD2 LINE L1 6072 6356 -3 1578 203 7 0 chr12 81895025 81895306 -62387183 + AluJo SINE Alu 1 283 -29 219 136 102 85 chr12 81895364 81895423 -62387066 - L2 LINE L2 -8 3264 3205 678 240 119 130 chr12 81895911 81896024 -62386465 + MLT1J1 LTR MaLR 34 147 -262 2114 115 96 3 chr12 81896024 81896336 -62386153 + MER7A DNA MER2_type 5 343 -3 678 240 119 130 chr12 81896336 81896578 -62385911 + MLT1J1 LTR MaLR 147 386 -23 399 21 0 0 chr12 81896799 81896847 -62385642 + (TG)n Simple_repeat Simple_repeat 2 49 0 1404 142 93 20 chr12 81896848 81897095 -62385394 - AluJo SINE Alu -26 286 22 1494 129 9 5 chr12 81897105 81897322 -62385167 - AluJb SINE Alu -10 302 85 317 273 146 9 chr12 81897644 81897754 -62384735 + L3 LINE CR1 1369 1493 -84 242 282 94 12 chr12 81897835 81897920 -62384569 - MER5A DNA MER1_type -1 188 97 21 57 0 0 chr12 81898079 81898114 -62384375 + AT_rich Low_complexity Low_complexity 1 35 0 827 147 7 63 chr12 81898123 81898231 -62384258 + AluJo SINE Alu 2 102 -210 2424 116 55 12 chr12 81898231 81898577 -62383912 + THE1B LTR MaLR 2 362 -2 827 147 7 63 chr12 81898577 81898611 -62383878 + AluJo SINE Alu 102 136 -176 342 213 33 107 chr12 81898611 81898733 -62383756 - L1M2 LINE L1 -4010 3097 2985 286 207 101 39 chr12 81898733 81898863 -62383626 - L1M2 LINE L1 -5236 1794 1204 21 36 0 0 chr12 81898872 81898900 -62383589 + AT_rich Low_complexity Low_complexity 1 28 0 650 284 0 6 chr12 81899468 81899630 -62382859 - MER63A DNA MER1_type 0 210 50 228 195 0 0 chr12 81899763 81899804 -62382685 + L1ME4a LINE L1 5562 5602 -519 392 280 172 18 chr12 81899845 81900124 -62382365 + L1ME4a LINE L1 5688 6009 -112 1890 230 56 66 chr12 81900155 81900869 -62381620 + L1M3e LINE L1 2 708 -6322 7366 167 50 145 chr12 81900883 81901781 -62380708 + L1MEc LINE L1 2148 3129 -3086 1542 138 74 22 chr12 81901781 81902090 -62380399 + AluJo SINE Alu 1 323 0 7366 167 50 145 chr12 81902090 81902718 -62379771 + L1MEc LINE L1 3129 3815 -2400 2257 88 0 29 chr12 81902718 81903025 -62379464 + AluY SINE Alu 1 298 -13 180 0 0 0 chr12 81903028 81903048 -62379441 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 7366 167 50 145 chr12 81903048 81903065 -62379424 + L1MEc LINE L1 3817 3834 -2381 831 175 8 0 chr12 81903065 81903191 -62379298 - FLAM_C SINE Alu -14 129 3 7366 167 50 145 chr12 81903191 81903585 -62378904 + L1MEc LINE L1 3834 4024 -2191 889 109 15 22 chr12 81903585 81903722 -62378767 + AluJb SINE Alu 1 136 -176 7366 167 50 145 chr12 81903722 81904114 -62378375 + L1MEc LINE L1 4024 4451 -1764 1661 169 0 11 chr12 81904114 81904381 -62378108 + AluJb SINE Alu 18 281 -31 865 154 15 0 chr12 81904381 81904511 -62377978 + AluJo/FRAM SINE Alu 160 291 -21 6108 146 50 34 chr12 81904522 81905923 -62376566 + L1MA9 LINE L1 4472 5849 -532 351 0 0 0 chr12 81905923 81905962 -62376527 + (TG)n Simple_repeat Simple_repeat 2 40 0 6108 146 50 34 chr12 81905962 81906288 -62376201 + L1MA9 LINE L1 5849 6168 -213 1661 141 63 0 chr12 81906288 81906558 -62375931 - AluJb SINE Alu -21 291 5 6108 146 50 34 chr12 81906558 81906585 -62375904 + L1MA9 LINE L1 6168 6193 -188 342 0 0 0 chr12 81906585 81906623 -62375866 + (CA)n Simple_repeat Simple_repeat 1 38 0 6108 146 50 34 chr12 81906623 81906748 -62375741 + L1MA9 LINE L1 6193 6381 0 839 275 72 79 chr12 81907015 81907418 -62375071 + MER115 DNA AcHobo 284 683 -10 498 263 22 83 chr12 81907452 81907481 -62375008 - L1MC4 LINE L1 -86 7956 7927 204 97 0 0 chr12 81907481 81907512 -62374977 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 498 263 22 83 chr12 81907512 81907561 -62374928 - L1MC4 LINE L1 -115 7927 7877 1938 162 3 0 chr12 81907561 81907863 -62374626 + AluJb SINE Alu 1 303 -9 498 263 22 83 chr12 81907863 81908061 -62374428 - L1MC4 LINE L1 -165 7877 7696 22 0 0 0 chr12 81908889 81908911 -62373578 + AT_rich Low_complexity Low_complexity 1 22 0 339 179 0 0 chr12 81909005 81909072 -62373417 + (CA)n Simple_repeat Simple_repeat 2 68 0 243 154 0 0 chr12 81909073 81909125 -62373364 - L1MC4 LINE L1 -1339 6703 6652 1991 125 4 14 chr12 81909132 81909413 -62373076 - AluSq SINE Alu -35 278 1 2308 112 0 0 chr12 81909417 81909721 -62372768 - AluSx SINE Alu -8 304 1 777 164 0 160 chr12 81910518 81910601 -62371888 - MER3 DNA MER1_type 0 209 114 1849 163 7 0 chr12 81910601 81910902 -62371587 + AluSx SINE Alu 1 303 -9 777 164 0 160 chr12 81910902 81910934 -62371555 - MER3 DNA MER1_type -95 114 79 2450 37 10 13 chr12 81910934 81911234 -62371255 + AluY SINE Alu 1 299 -12 777 164 0 160 chr12 81911234 81911349 -62371140 - MER3 DNA MER1_type -130 79 16 1149 176 110 56 chr12 81911349 81911912 -62370577 + LTR48 LTR ERV1 1 787 0 2380 102 3 0 chr12 81913076 81913381 -62369108 + AluSx SINE Alu 1 306 -6 576 187 72 22 chr12 81913408 81913547 -62368942 - MIR SINE MIR -1 261 116 2525 125 0 78 chr12 81913554 81913747 -62368742 + MLT1B LTR MaLR 1 145 -245 2205 125 3 0 chr12 81913747 81914059 -62368430 - AluSq SINE Alu 0 313 1 2525 125 0 78 chr12 81914059 81914288 -62368201 + MLT1B LTR MaLR 145 390 0 200 333 161 0 chr12 81914294 81914387 -62368102 - L2 LINE L2 -18 3295 3188 2921 133 63 55 chr12 81914394 81914515 -62367974 - MER34C LTR ERV1 0 585 466 1385 178 7 79 chr12 81914515 81914858 -62367631 - AluJo SINE Alu 0 321 1 2921 133 63 55 chr12 81914858 81915278 -62367211 - MER34C LTR ERV1 -119 466 39 780 296 76 28 chr12 81915281 81915717 -62366772 - L2 LINE L2 -127 3186 2737 4858 148 23 19 chr12 81915724 81916853 -62365636 - L1MC1 LINE L1 -19 6314 5221 249 238 16 16 chr12 81916854 81916917 -62365572 - L2 LINE L2 -566 2748 2686 2014 131 0 0 chr12 81916917 81917200 -62365289 + AluSx SINE Alu 1 283 -29 301 264 35 0 chr12 81917201 81917288 -62365201 - L1MC4 LINE L1 -1341 6701 6612 2678 151 31 2 chr12 81917386 81917802 -62364687 + MSTA LTR MaLR 1 428 0 3137 251 45 42 chr12 81917830 81918117 -62364372 - L2 LINE L2 -686 2628 2343 1582 170 129 81 chr12 81918117 81918599 -62363890 + MLT1D LTR MaLR 1 505 0 3137 251 45 42 chr12 81918599 81919295 -62363194 - L2 LINE L2 -971 2343 1642 232 121 0 0 chr12 81919297 81919330 -62363159 - MIR SINE MIR -147 115 83 895 220 46 46 chr12 81919330 81919589 -62362900 + MLT1H LTR MaLR 289 547 -2 369 0 0 0 chr12 81919786 81919827 -62362662 + (TG)n Simple_repeat Simple_repeat 2 42 0 1616 152 19 0 chr12 81919828 81920084 -62362405 - AluJb SINE Alu -51 261 1 1734 148 22 4 chr12 81921128 81921406 -62361083 - AluSx SINE Alu -17 295 13 2418 89 0 3 chr12 81921666 81921968 -62360521 - AluSx SINE Alu -11 301 1 204 204 93 0 chr12 81921971 81922025 -62360464 - MIR SINE MIR -14 248 190 1051 228 77 4 chr12 81922524 81922770 -62359719 - MLT1F1 LTR MaLR 0 567 304 723 216 26 7 chr12 81922776 81922929 -62359560 - MLT1F1 LTR MaLR -385 157 2 180 244 44 0 chr12 81923052 81923097 -62359392 - MIR3 SINE MIR -24 184 138 1090 198 234 19 chr12 81924692 81925060 -62357429 - L2 LINE L2 0 3313 2867 215 281 198 48 chr12 81925042 81925209 -62357280 + MIR SINE MIR 23 214 -48 * 240 320 0 0 chr12 81925321 81925399 -62357090 + MIR SINE MIR 179 256 -6 295 223 188 18 chr12 81926138 81926251 -62356238 + MIR SINE MIR 53 192 -62 208 188 21 21 chr12 81926716 81926764 -62355725 + CT-rich Low_complexity Low_complexity 2 49 0 457 250 143 16 chr12 81927103 81927257 -62355232 + MLT1I LTR MaLR 34 206 -203 297 246 159 32 chr12 81927297 81927423 -62355066 - MLT1H1 LTR MaLR -12 537 396 1572 170 10 104 chr12 81927443 81927837 -62354652 - MLT1A1 LTR MaLR -8 357 1 315 170 19 0 chr12 81927851 81927904 -62354585 - MLT1H1 LTR MaLR -202 353 300 700 137 13 4 chr12 81927935 81928052 -62354437 - MER34C LTR ERV1 0 585 426 258 32 0 0 chr12 81928052 81928083 -62354406 + (TG)n Simple_repeat Simple_repeat 1 31 0 935 133 46 0 chr12 81928085 81928236 -62354253 - MER34C LTR ERV1 -231 354 197 1612 176 3 27 chr12 81928239 81928540 -62353949 - L1PBa LINE L1 -5178 1685 1392 784 233 16 0 chr12 81928537 81928726 -62353763 - L1PBa LINE L1 -6666 197 6 * 1225 162 19 5 chr12 81928735 81928945 -62353544 - MER34C LTR ERV1 -371 214 2 723 271 11 0 chr12 81929037 81929218 -62353271 - MLT1H1 LTR MaLR -372 183 1 1727 167 103 32 chr12 81929612 81929960 -62352529 + MER93b LTR ERV1 1 373 0 1490 140 0 14 chr12 81931194 81931415 -62351074 + MER20 DNA MER1_type 2 219 0 242 276 134 60 chr12 81931582 81931799 -62350690 - L2 LINE L2 -1 3312 3080 225 265 61 71 chr12 81932259 81932357 -62350132 - L2 LINE L2 -219 3053 2957 193 288 0 41 chr12 81932930 81933003 -62349486 - L2 LINE L2 -956 2358 2289 355 200 27 13 chr12 81933491 81933566 -62348923 + MLT1D LTR MaLR 13 88 -417 816 203 109 127 chr12 81933611 81934108 -62348381 - LTR8A LTR ERV1 0 727 240 1280 233 32 43 chr12 81934433 81934780 -62347709 + MLT1D LTR MaLR 163 505 0 3722 148 61 5 chr12 81935559 81936148 -62346341 + LTR26E LTR ERV1 1 622 0 256 182 23 0 chr12 81936244 81936288 -62346201 + MER21B LTR ERV1 46 90 -773 2944 222 69 47 chr12 81936310 81936565 -62345924 + MER21B LTR ERV1 19 267 -596 4195 151 9 9 chr12 81936565 81937200 -62345289 + MER41B LTR ERV1 1 635 0 2944 222 69 47 chr12 81937200 81937715 -62344774 + MER21B LTR ERV1 267 806 -57 1138 164 22 0 chr12 81937762 81937945 -62344544 + MER58A DNA MER1_type 37 223 -1 1575 206 26 91 chr12 81938023 81938038 -62344451 - MLT1C LTR MaLR 0 467 453 2894 205 7 34 chr12 81938038 81938594 -62343895 - MER87 LTR ERV1 0 541 1 1575 206 26 91 chr12 81938594 81938650 -62343839 - MLT1C LTR MaLR -14 453 395 2183 124 3 13 chr12 81938650 81938965 -62343524 + AluSx SINE Alu 1 312 0 1575 206 26 91 chr12 81938965 81939387 -62343102 - MLT1C LTR MaLR -72 395 5 21 0 0 0 chr12 81939578 81939599 -62342890 + AT_rich Low_complexity Low_complexity 1 21 0 2208 113 3 0 chr12 81939610 81939901 -62342588 - AluSq SINE Alu -20 293 2 265 286 0 0 chr12 81940670 81940747 -62341742 + LTR33A LTR ERVL 446 522 -1 2176 118 3 10 chr12 81940800 81941104 -62341385 - AluSq SINE Alu -11 302 1 189 107 0 0 chr12 81941219 81941247 -62341242 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2355 207 40 113 chr12 81941264 81941514 -62340975 - MER21B LTR ERV1 -124 739 472 2069 105 4 7 chr12 81941514 81941790 -62340699 + AluSx SINE Alu 21 295 -17 2355 207 40 113 chr12 81941790 81942276 -62340213 - MER21B LTR ERV1 -391 472 61 2758 123 15 73 chr12 81942276 81942348 -62340141 - MSTA LTR MaLR 0 428 353 1928 175 10 0 chr12 81942348 81942657 -62339832 + AluJb SINE Alu 1 312 0 2758 123 15 73 chr12 81942657 81943038 -62339451 - MSTA LTR MaLR -75 353 1 2355 207 40 113 chr12 81943038 81943081 -62339408 - MER21B LTR ERV1 -802 61 16 817 163 0 43 chr12 81943081 81943222 -62339267 - FLAM_C SINE Alu -4 139 5 422 298 92 69 chr12 81943305 81943503 -62338986 + L1M4 LINE L1 3501 3712 -2434 1642 204 0 7 chr12 81943503 81943802 -62338687 + AluJo SINE Alu 1 297 -15 422 298 92 69 chr12 81943802 81943949 -62338540 + L1M4 LINE L1 3712 3854 -2292 291 156 0 111 chr12 81943958 81944048 -62338441 + L1M4 LINE L1 3887 3966 -2180 482 174 23 0 chr12 81944053 81944139 -62338350 - MER4D LTR ERV1 0 903 816 2692 176 14 8 chr12 81944161 81944644 -62337845 - MER4D LTR ERV1 -332 571 86 1843 142 11 3 chr12 81944659 81944941 -62337548 - AluJo SINE Alu -26 286 3 2307 209 32 34 chr12 81945194 81945386 -62337103 + MLT1F LTR MaLR 8 199 -343 1452 122 80 0 chr12 81945386 81945599 -62336890 - MER30 DNA MER1_type 0 230 1 2307 209 32 34 chr12 81945599 81945942 -62336547 + MLT1F LTR MaLR 199 542 0 480 272 130 48 chr12 81946204 81946896 -62335593 + L1M4 LINE L1 3715 4463 -1683 810 191 0 0 chr12 81946900 81947031 -62335458 + FLAM_C SINE Alu 1 131 -12 303 291 74 10 chr12 81947054 81947257 -62335232 + L1M4 LINE L1 4456 4671 -1475 273 267 37 59 chr12 81948790 81948925 -62333564 + L1M4 LINE L1 4696 4827 -1319 318 269 190 57 chr12 81948964 81949218 -62333271 + L1M4 LINE L1 4874 5093 -1053 1775 164 21 3 chr12 81949218 81949505 -62332984 - AluJb SINE Alu -20 292 1 318 269 190 57 chr12 81949505 81949655 -62332834 + L1M4 LINE L1 5093 5332 -814 665 171 19 0 chr12 81949656 81949761 -62332728 + U6 snRNA snRNA 1 107 0 24 32 0 0 chr12 81949823 81949854 -62332635 + AT_rich Low_complexity Low_complexity 1 31 0 2096 112 0 0 chr12 81950009 81950286 -62332203 + AluSg SINE Alu 30 306 -4 353 310 93 16 chr12 81950406 81950535 -62331954 + MIR SINE MIR 24 162 -100 3163 160 38 6 chr12 81950542 81951074 -62331415 + MER68 LTR ERV1 13 561 -1 326 273 71 0 chr12 81951598 81951697 -62330792 + MIR SINE MIR 157 262 0 250 254 88 53 chr12 81951721 81951835 -62330654 - L2 LINE L2 -49 3264 3147 2065 122 7 3 chr12 81951836 81952130 -62330359 + AluSx SINE Alu 1 295 -17 1856 253 25 47 chr12 81952158 81952918 -62329571 - L2 LINE L2 -134 3179 2444 2085 104 30 7 chr12 81952981 81953280 -62329209 - AluSx SINE Alu -6 306 1 876 133 147 99 chr12 81953899 81954110 -62328379 - AluJo SINE Alu -7 305 85 2260 109 0 3 chr12 81955885 81956187 -62326302 + AluSx SINE Alu 1 301 -11 180 0 0 0 chr12 81956187 81956207 -62326282 + (GA)n Simple_repeat Simple_repeat 1 20 0 186 167 0 0 chr12 81956210 81956246 -62326243 + G-rich Low_complexity Low_complexity 3 38 0 605 202 65 42 chr12 81957275 81957443 -62325046 + MER5B DNA MER1_type 5 176 -2 471 253 76 117 chr12 81958455 81958864 -62323625 - MER34 LTR ERV1 0 542 161 2009 103 57 0 chr12 81958864 81959146 -62323343 + AluSx SINE Alu 1 298 -14 471 253 76 117 chr12 81959146 81959301 -62323188 - MER34 LTR ERV1 -381 161 1 1338 234 30 28 chr12 81959377 81959586 -62322903 + MER31B LTR ERV1 1 213 -253 1021 198 12 0 chr12 81959586 81959758 -62322731 - FAM SINE Alu 0 175 2 1338 234 30 28 chr12 81959758 81959911 -62322578 + MER31B LTR ERV1 213 364 -102 1655 177 38 3 chr12 81959913 81960240 -62322249 + AluJo SINE Alu 3 312 0 868 156 23 0 chr12 81960250 81960423 -62322066 + GA-rich Low_complexity Low_complexity 2 178 0 467 184 32 32 chr12 81960423 81960548 -62321941 + MER31A LTR ERV1 353 477 -8 504 233 75 0 chr12 81960851 81960971 -62321518 - LTR16A1 LTR ERVL 0 457 329 296 255 20 29 chr12 81962005 81962107 -62320382 - MIR3 SINE MIR 0 208 108 303 267 82 123 chr12 81962120 81962315 -62320174 + Charlie8 DNA MER1_type 7 193 -2224 1054 168 0 0 chr12 81962399 81962560 -62319929 - FRAM SINE Alu -4 162 2 577 249 51 28 chr12 81963844 81964021 -62318468 - MIR SINE MIR 0 262 82 242 253 13 27 chr12 81964124 81964199 -62318290 + MLT1J LTR MaLR 1 74 -437 284 184 53 26 chr12 81964339 81964415 -62318074 - MIR SINE MIR 0 262 185 33 25 0 0 chr12 81964554 81964594 -62317895 + AT_rich Low_complexity Low_complexity 1 40 0 2305 101 0 0 chr12 81964684 81964982 -62317507 - AluSx SINE Alu -14 298 1 287 217 33 0 chr12 81964983 81965043 -62317446 + L1ME LINE L1 5601 5662 -459 1504 126 142 8 chr12 81965096 81965342 -62317147 + AluSg1 SINE Alu 1 279 -30 372 104 0 0 chr12 81965345 81965412 -62317077 + (CATA)n Simple_repeat Simple_repeat 2 68 0 186 71 0 0 chr12 81965489 81965517 -62316972 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1807 166 27 0 chr12 81965716 81966017 -62316472 - AluJo SINE Alu -2 310 2 3242 186 37 91 chr12 81966049 81966697 -62315792 + MER97a DNA MER1_type 2 585 -309 2222 103 0 26 chr12 81966697 81967007 -62315482 + AluSx SINE Alu 3 304 -8 3242 186 37 91 chr12 81967007 81967302 -62315187 + MER97a DNA MER1_type 585 894 0 2217 113 0 10 chr12 81967586 81967896 -62314593 - AluSp SINE Alu -6 307 1 332 226 16 0 chr12 81968098 81968160 -62314329 - L2 LINE L2 -47 3225 3163 268 336 131 30 chr12 81968251 81968366 -62314123 + L2 LINE L2 2746 2848 -424 2283 94 13 0 chr12 81968366 81968664 -62313825 - AluSc SINE Alu -7 302 1 268 336 131 30 chr12 81968664 81968859 -62313630 + L2 LINE L2 2848 3101 -171 32 0 0 0 chr12 81969422 81969454 -62313035 + AT_rich Low_complexity Low_complexity 1 32 0 336 243 40 86 chr12 81970789 81970941 -62311548 + MIR SINE MIR 118 262 0 27123 118 14 74 chr12 81971109 81976031 -62306458 + L1PA7 LINE L1 12 4638 -1508 1325 69 0 0 chr12 81976031 81976190 -62306299 + L1PA3 LINE L1 5997 6155 0 7482 52 8 2 chr12 81976193 81977702 -62304787 + L1PA7 LINE L1 4630 6143 -11 1109 253 102 24 chr12 81978515 81978696 -62303793 + L1ME3A LINE L1 4834 4999 -1171 2055 143 3 0 chr12 81978696 81978997 -62303492 + AluSx SINE Alu 6 307 -5 1109 253 102 24 chr12 81978997 81979219 -62303270 + L1ME3A LINE L1 4999 5202 -968 2481 67 0 0 chr12 81979219 81979518 -62302971 - AluSp SINE Alu -14 299 1 1109 253 102 24 chr12 81979518 81979886 -62302603 + L1ME3A LINE L1 5202 5676 -494 207 0 0 0 chr12 81979886 81979909 -62302580 + (TA)n Simple_repeat Simple_repeat 2 24 0 1109 253 102 24 chr12 81979909 81979948 -62302541 + L1ME3A LINE L1 5676 5711 -459 426 276 35 35 chr12 81980156 81980344 -62302145 - LTR43 LTR ERV1 -208 471 132 1636 247 27 18 chr12 81980497 81980942 -62301547 + L1ME3A LINE L1 5717 6165 -5 296 255 137 0 chr12 81981054 81981156 -62301333 + L1ME4a LINE L1 5968 6083 -38 348 312 38 76 chr12 81981411 81981648 -62300841 - L2 LINE L2 -209 3063 2836 355 232 203 22 chr12 81982804 81982942 -62299547 + MIR SINE MIR 41 203 -59 252 110 40 50 chr12 81982953 81983053 -62299436 + (TA)n Simple_repeat Simple_repeat 1 99 0 338 109 0 9 chr12 81983112 81983174 -62299315 + MLT2D LTR ERVL 323 480 -40 1598 140 23 49 chr12 81983242 81983541 -62298948 - MLT2D LTR ERVL -20 534 113 252 0 0 0 chr12 81983541 81983569 -62298920 + (TG)n Simple_repeat Simple_repeat 1 28 0 1486 175 49 0 chr12 81983572 81983835 -62298654 - AluJb SINE Alu -36 276 1 198 280 0 110 chr12 81983929 81984029 -62298460 - MIR3 SINE MIR -5 203 115 4740 82 4 15 chr12 81984574 81985255 -62297234 + L1PA7 LINE L1 5478 6151 -3 5608 206 104 51 chr12 81985257 81985567 -62296922 - L1M4 LINE L1 -1289 5355 5063 1393 165 90 8 chr12 81985567 81985834 -62296655 - AluJb SINE Alu -23 289 1 5608 206 104 51 chr12 81985834 81987379 -62295110 - L1M4 LINE L1 -1581 5063 3602 870 159 0 0 chr12 81987379 81987528 -62294961 - AluSg/x SINE Alu 0 310 162 5608 206 104 51 chr12 81987528 81987822 -62294667 - L1M4 LINE L1 -3042 3602 3325 258 32 0 0 chr12 81987822 81987853 -62294636 + (TG)n Simple_repeat Simple_repeat 1 31 0 5608 206 104 51 chr12 81987853 81989361 -62293128 - L1M4 LINE L1 -3319 3325 1262 316 269 126 0 chr12 81989488 81989655 -62292834 - L1M4 LINE L1 -6291 251 64 21 0 0 0 chr12 81989970 81989991 -62292498 + AT_rich Low_complexity Low_complexity 1 21 0 190 351 0 18 chr12 81990721 81990778 -62291711 - MER5A DNA MER1_type -103 86 31 306 273 15 91 chr12 81990825 81990957 -62291532 - MER5B DNA MER1_type -56 122 1 296 246 132 13 chr12 81991055 81991198 -62291291 + MIR SINE MIR 8 166 -42 311 183 25 50 chr12 81992682 81992802 -62289687 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 1453 161 100 23 chr12 81992802 81993063 -62289426 - AluJo SINE Alu -29 283 3 654 217 86 124 chr12 81993447 81993714 -62288775 + MIR SINE MIR 3 259 -3 1975 257 56 21 chr12 81994848 81995465 -62287024 + MLT1G LTR MaLR 1 542 0 1329 234 74 36 chr12 81996134 81996498 -62285991 - MER82 DNA MER2_type -6 647 270 1387 179 19 10 chr12 81996669 81996976 -62285513 - AluSx SINE Alu -2 310 1 836 151 26 66 chr12 81996976 81997128 -62285361 - AluJo SINE Alu -166 146 1 13235 123 10 80 chr12 81997225 81998382 -62284107 - Tigger1 DNA MER2_type -1 2417 1181 801 192 0 0 chr12 81998382 81998507 -62283982 + FLAM_C SINE Alu 1 125 -18 13235 123 10 80 chr12 81998507 81999588 -62282901 - Tigger1 DNA MER2_type -1237 1181 26 1785 174 7 7 chr12 81999588 81999904 -62282585 + AluJb SINE Alu 3 318 0 13235 123 10 80 chr12 81999904 82000061 -62282428 - Tigger1 DNA MER2_type -2392 26 79 2308 110 3 0 chr12 82000061 82000370 -62282119 - AluSp SINE Alu -3 310 1 13235 123 10 80 chr12 82000370 82000445 -62282044 - Tigger1 DNA MER2_type -2338 80 1 878 206 25 76 chr12 82001454 82001770 -62280719 + LTR37A LTR ERV1 51 350 -76 2498 77 0 0 chr12 82001770 82002081 -62280408 + AluY SINE Alu 1 311 0 2530 37 3 0 chr12 82003143 82003438 -62279051 + AluY SINE Alu 1 296 -15 549 305 108 5 chr12 82003988 82004201 -62278288 + MIR SINE MIR 2 236 -26 33 25 0 0 chr12 82004261 82004301 -62278188 + AT_rich Low_complexity Low_complexity 1 40 0 2092 114 0 4 chr12 82004459 82004739 -62277750 + AluSx SINE Alu 2 280 -32 1082 46 34 11 chr12 82004741 82004916 -62277573 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 453 116 0 0 chr12 82004916 82004985 -62277504 + (GGGA)n Simple_repeat Simple_repeat 1 69 0 432 0 0 0 chr12 82005076 82005124 -62277365 + (TG)n Simple_repeat Simple_repeat 1 48 0 203 338 0 0 chr12 82005138 82005212 -62277277 + (TG)n Simple_repeat Simple_repeat 2 75 0 267 306 0 38 chr12 82005863 82006011 -62276478 + GA-rich Low_complexity Low_complexity 2 143 -34 866 132 9 162 chr12 82006011 82006239 -62276250 + 7SK RNA RNA 1 193 0 267 306 0 38 chr12 82006239 82006273 -62276216 + GA-rich Low_complexity Low_complexity 143 177 0 229 363 0 0 chr12 82006389 82006498 -62275991 + GA-rich Low_complexity Low_complexity 1 109 0 734 280 54 29 chr12 82006653 82006892 -62275597 - MIR SINE MIR -14 248 4 191 111 0 28 chr12 82007501 82007537 -62274952 + (TTCTCC)n Simple_repeat Simple_repeat 5 39 0 1185 199 42 0 chr12 82007554 82007885 -62274604 + L1M4 LINE L1 4978 5322 -824 348 314 100 30 chr12 82008872 82009060 -62273429 - MIR SINE MIR -39 223 17 495 247 121 43 chr12 82009474 82009705 -62272784 + MIR SINE MIR 1 249 -13 251 102 0 20 chr12 82009708 82009757 -62272732 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 203 147 0 0 chr12 82009817 82009851 -62272638 + (CAT)n Simple_repeat Simple_repeat 3 36 0 40734 36 25 2 chr12 82009881 82015235 -62267254 + L1P1 LINE L1 1 5476 -679 674 122 10 0 chr12 82015336 82015434 -62267055 - AluSc SINE Alu -137 172 74 519 160 11 0 chr12 82015434 82015528 -62266961 + MLT1A1 LTR MaLR 271 365 0 2139 102 10 7 chr12 82015535 82015828 -62266661 - AluSq SINE Alu -15 298 5 276 233 0 68 chr12 82015836 82015909 -62266580 - MER21B LTR ERV1 -618 245 178 1105 207 27 4 chr12 82016311 82016567 -62265922 - L1 LINE L1 -1120 5026 4765 203 177 16 0 chr12 82016666 82016728 -62265761 + (CACCC)n Simple_repeat Simple_repeat 3 65 0 758 284 147 13 chr12 82016837 82017744 -62264745 + L1ME3A LINE L1 4796 5830 -340 1384 239 49 29 chr12 82018373 82018548 -62263941 + L1M4 LINE L1 4362 4532 -1614 1604 146 86 4 chr12 82018548 82018815 -62263674 + AluJb SINE Alu 1 289 -23 1384 239 49 29 chr12 82018815 82019125 -62263364 + L1M4 LINE L1 4532 4857 -1289 6967 53 34 2 chr12 82019127 82020906 -62261583 - L1PA7 LINE L1 -3 6151 4339 2479 181 14 34 chr12 82021147 82021770 -62260719 - HERVH LTR ERV1 -6302 1411 801 1814 185 49 25 chr12 82021830 82022278 -62260211 - HERVH LTR ERV1 -7254 459 1 2095 119 117 24 chr12 82022278 82022690 -62259799 - LTR7 LTR ERV1 0 450 1 2665 110 5 14 chr12 82022690 82023125 -62259364 - HERVH LTR ERV1 0 7713 7283 6570 112 21 6 chr12 82023130 82024164 -62258325 - HERVH LTR ERV1 -2699 5014 3993 500 261 110 91 chr12 82024389 82024858 -62257631 + L1M4 LINE L1 3047 3506 -2640 2391 78 7 10 chr12 82024858 82025166 -62257323 + AluSx SINE Alu 5 311 -1 500 261 110 91 chr12 82025166 82025626 -62256863 + L1M4 LINE L1 3506 3993 -2153 1795 181 3 10 chr12 82025648 82025962 -62256527 + AluJb SINE Alu 1 312 0 183 224 0 0 chr12 82025975 82026051 -62256438 + (TA)n Simple_repeat Simple_repeat 2 77 0 4790 154 37 52 chr12 82026349 82028037 -62254452 - L1MA9 LINE L1 -1 6311 4640 1023 186 28 67 chr12 82028368 82028621 -62253868 - MER82 DNA MER2_type -410 243 1 514 193 23 80 chr12 82028653 82028829 -62253660 + MER103 DNA DNA 1 166 0 6066 65 11 0 chr12 82029233 82030054 -62252435 - L1PA7 LINE L1 -25 6129 5302 739 260 85 8 chr12 82030168 82030403 -62252086 + MIR SINE MIR 9 261 -1 25 31 0 0 chr12 82030502 82030534 -62251955 + AT_rich Low_complexity Low_complexity 1 32 0 191 377 22 7 chr12 82031046 82031184 -62251305 + L2 LINE L2 2282 2421 -893 1813 104 6 82 chr12 82031206 82031522 -62250967 - AluSx SINE Alu -20 292 1 22 0 0 0 chr12 82031704 82031726 -62250763 + AT_rich Low_complexity Low_complexity 1 22 0 1788 232 70 17 chr12 82031813 82032352 -62250137 - L1ME1 LINE L1 -5 6144 5577 3609 237 73 37 chr12 82032372 82032855 -62249634 - L1ME1 LINE L1 -1282 4847 4383 808 150 47 0 chr12 82032855 82032982 -62249507 + FLAM_A SINE Alu 1 133 0 3609 237 73 37 chr12 82032982 82033922 -62248567 - L1ME1 LINE L1 -1746 4383 3373 287 153 61 112 chr12 82033908 82034006 -62248483 - L1ME1 LINE L1 -3622 2507 2415 * 354 324 103 28 chr12 82034407 82034946 -62247543 - L1ME1 LINE L1 -3771 2358 1791 462 281 96 58 chr12 82035062 82035815 -62246674 - L1ME1 LINE L1 -4863 1266 620 2153 102 37 0 chr12 82035835 82036130 -62246359 - AluSp SINE Alu -7 306 1 222 296 0 0 chr12 82036241 82036295 -62246194 - MIR SINE MIR -175 87 34 2008 139 3 3 chr12 82036374 82036677 -62245812 + AluSx SINE Alu 1 303 -9 1946 152 3 0 chr12 82036781 82037083 -62245406 + AluSx SINE Alu 6 308 -4 417 271 47 31 chr12 82037295 82037424 -62245065 + MIR SINE MIR 31 161 -101 223 303 91 30 chr12 82037662 82037761 -62244728 + MIR3 SINE MIR 64 168 -40 21 57 0 0 chr12 82039038 82039073 -62243416 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr12 82041337 82041359 -62241130 + AT_rich Low_complexity Low_complexity 1 22 0 2112 124 7 10 chr12 82041814 82042121 -62240368 - AluSx SINE Alu -5 307 2 536 278 120 0 chr12 82042383 82042574 -62239915 + MIR SINE MIR 7 220 -42 596 257 49 59 chr12 82042577 82042881 -62239608 + HAL1 LINE L1 8 308 -2199 * 924 209 75 52 chr12 82042878 82043099 -62239390 + HAL1 LINE L1 1478 1709 -798 564 217 85 16 chr12 82043099 82043288 -62239201 + MER105 DNA DNA 2 203 -1 924 209 75 52 chr12 82043288 82043372 -62239117 + HAL1 LINE L1 1709 1790 -717 1005 216 125 33 chr12 82043857 82044236 -62238253 + MER57A LTR ERV1 19 403 0 649 252 73 45 chr12 82045646 82045892 -62236597 - MER112 DNA MER1_type -7 253 1 25 0 0 0 chr12 82045927 82045952 -62236537 + AT_rich Low_complexity Low_complexity 1 25 0 2736 16 3 0 chr12 82047100 82047408 -62235081 + AluYb8 SINE Alu 1 309 -9 314 307 119 0 chr12 82047439 82047540 -62234949 - L2 LINE L2 -6 3266 3154 24 0 0 0 chr12 82047745 82047769 -62234720 + AT_rich Low_complexity Low_complexity 1 24 0 297 318 104 7 chr12 82047771 82047925 -62234564 - MIR SINE MIR -49 213 45 369 347 81 28 chr12 82048049 82048454 -62234035 + L1M3a LINE L1 1836 2314 -5172 1238 254 24 6 chr12 82048468 82048798 -62233691 + L1M3a LINE L1 2244 2579 -4907 2638 237 96 47 chr12 82048817 82050443 -62232046 + L1M3a LINE L1 2791 4521 -3044 1611 203 20 3 chr12 82050443 82050744 -62231745 + AluJo SINE Alu 1 306 -6 2638 237 96 47 chr12 82050744 82050969 -62231520 + L1M3a LINE L1 4521 4734 -2831 3800 189 78 0 chr12 82050992 82051831 -62230658 + L1M3a LINE L1 5152 6055 -1510 887 115 8 0 chr12 82051832 82051954 -62230535 + AluSg SINE Alu 1 123 -187 741 235 101 66 chr12 82052059 82052260 -62230229 - L1MEc LINE L1 -3670 2545 2353 2192 127 0 0 chr12 82052260 82052568 -62229921 - AluSq SINE Alu -5 308 1 741 235 101 66 chr12 82052568 82052869 -62229620 - L1MEc LINE L1 -3862 2353 2085 984 160 97 11 chr12 82052911 82053086 -62229403 - MER20 DNA MER1_type -1 218 29 611 308 66 0 chr12 82053092 82053134 -62229355 - L1MEc LINE L1 -4330 2066 2028 2007 84 0 0 chr12 82053134 82053385 -62229104 + AluSq SINE Alu 1 251 -62 611 308 66 0 chr12 82053385 82053631 -62228858 - L1MEc LINE L1 -4368 2028 1759 22 35 0 0 chr12 82054190 82054219 -62228270 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr12 82054908 82054949 -62227540 + AT_rich Low_complexity Low_complexity 1 41 0 1410 215 165 33 chr12 82055043 82055522 -62226967 + MLT1F LTR MaLR 1 542 0 1513 211 46 175 chr12 82057459 82058282 -62224207 + Charlie6 DNA MER1_type 1 717 -2783 28 0 0 0 chr12 82058360 82058388 -62224101 + AT_rich Low_complexity Low_complexity 1 28 0 466 269 119 23 chr12 82058435 82058654 -62223835 - L1MC4a LINE L1 -1749 6059 5820 1021 267 36 16 chr12 82058659 82058962 -62223527 - L1MC4a LINE L1 -2021 5787 5479 356 291 64 50 chr12 82059104 82059324 -62223165 - L1MC4a LINE L1 -2331 5477 5255 914 169 0 6 chr12 82061257 82061417 -62221072 - MIR SINE MIR 0 262 104 972 190 0 60 chr12 82062088 82062304 -62220185 + AluJo SINE Alu 87 289 -23 203 339 40 45 chr12 82062748 82062925 -62219564 - L2 LINE L2 -225 3047 2872 21 57 0 0 chr12 82063781 82063816 -62218673 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 82063938 82063959 -62218530 + AT_rich Low_complexity Low_complexity 1 21 0 2571 49 0 3 chr12 82063963 82064271 -62218218 + AluY SINE Alu 1 307 -4 2141 111 7 0 chr12 82064276 82064583 -62217906 + AluSc SINE Alu 1 309 0 369 259 288 0 chr12 82066155 82066325 -62216164 + MIR SINE MIR 34 252 -10 21 36 0 0 chr12 82066434 82066462 -62216027 + AT_rich Low_complexity Low_complexity 1 28 0 364 149 0 23 chr12 82066530 82066617 -62215872 + (TA)n Simple_repeat Simple_repeat 2 86 0 1531 179 39 14 chr12 82067011 82067291 -62215198 + AluJo SINE Alu 1 287 -25 1964 148 0 10 chr12 82067352 82067649 -62214840 - AluJb SINE Alu -18 294 1 26 0 0 0 chr12 82067724 82067750 -62214739 + AT_rich Low_complexity Low_complexity 1 26 0 226 275 58 0 chr12 82068819 82068888 -62213601 + L2 LINE L2 3234 3306 -7 3929 82 34 0 chr12 82070559 82071117 -62211372 - L1PA13 LINE L1 -15 6148 5572 1877 128 38 3 chr12 82071327 82071615 -62210874 - AluSx SINE Alu -14 298 1 1034 232 29 25 chr12 82071937 82072178 -62210311 - MIR SINE MIR -19 243 2 21 0 0 0 chr12 82072182 82072203 -62210286 + AT_rich Low_complexity Low_complexity 1 21 0 361 283 112 40 chr12 82073993 82074145 -62208344 - MIR SINE MIR -53 209 47 2531 108 39 151 chr12 82075053 82075542 -62206947 + Tigger2 DNA MER2_type 1 2718 0 493 299 62 6 chr12 82075554 82075731 -62206758 - MIR SINE MIR -73 189 3 1880 172 0 0 chr12 82075807 82076097 -62206392 + AluJo SINE Alu 1 290 -22 567 212 96 7 chr12 82076588 82076734 -62205755 + MIR SINE MIR 70 228 -34 1875 144 14 0 chr12 82077259 82077543 -62204946 - AluJo SINE Alu -24 288 1 1712 161 18 4 chr12 82077897 82078177 -62204312 - AluJo SINE Alu -27 285 2 420 257 154 7 chr12 82078481 82078617 -62203872 + MIR SINE MIR 33 188 -74 721 176 0 22 chr12 82078655 82078791 -62203698 + FLAM_A SINE Alu 1 133 0 2441 60 3 3 chr12 82078812 82079113 -62203376 + AluY SINE Alu 1 301 -10 922 209 48 0 chr12 82079199 82079386 -62203103 + MER3 DNA MER1_type 1 196 -13 1444 218 103 30 chr12 82079727 82080230 -62202259 + MER39 LTR ERV1 1 576 -9 330 245 19 66 chr12 82081688 82081794 -62200695 + MIR SINE MIR 161 261 -1 598 231 141 12 chr12 82082441 82083069 -62199420 + L1ME3 LINE L1 5432 6160 -2 2191 118 0 7 chr12 82133918 82134223 -62148266 - AluSg SINE Alu -7 303 1 2092 118 10 0 chr12 82134595 82134891 -62147598 + AluSg SINE Alu 2 300 -10 22 0 0 0 chr12 82135379 82135401 -62147088 + AT_rich Low_complexity Low_complexity 1 22 0 2101 122 3 7 chr12 82135619 82135914 -62146575 - AluSx SINE Alu -18 294 1 2245 94 0 3 chr12 82135928 82136215 -62146274 - AluSg SINE Alu -24 286 1 240 151 0 38 chr12 82136180 82136233 -62146256 - AluSp SINE Alu -133 170 120 2440 75 3 0 chr12 82136569 82136863 -62145626 - AluSp SINE Alu -18 295 1 1202 154 0 48 chr12 82137539 82137766 -62144723 - AluJo SINE Alu -11 301 86 1888 181 98 44 chr12 82137932 82138391 -62144098 - MLT1D LTR MaLR -10 495 12 1198 228 116 57 chr12 82138729 82139001 -62143488 - L1MC5 LINE L1 -77 7884 7629 2598 65 0 0 chr12 82139001 82139310 -62143179 - AluSp SINE Alu -4 309 1 1198 228 116 57 chr12 82139310 82139703 -62142786 - L1MC5 LINE L1 -332 7629 7180 1015 118 41 0 chr12 82139845 82140014 -62142475 - L1MA2 LINE L1 -7 6297 6122 2017 66 93 0 chr12 82140133 82140391 -62142098 - AluY SINE Alu -29 282 1 290 231 39 13 chr12 82140830 82140908 -62141581 + MIR SINE MIR 104 183 -79 23 54 0 0 chr12 82141790 82141827 -62140662 + AT_rich Low_complexity Low_complexity 1 37 0 2238 126 0 3 chr12 82142097 82142407 -62140082 - AluSx SINE Alu -3 309 1 22 80 0 0 chr12 82142464 82142514 -62139975 + AT_rich Low_complexity Low_complexity 1 50 0 563 309 112 6 chr12 82142985 82143351 -62139138 + L1MC4a LINE L1 5445 5849 -1959 10864 125 40 4 chr12 82143462 82145280 -62137209 + Tigger1 DNA MER2_type 1 1883 -535 1526 211 68 114 chr12 82145280 82146061 -62136428 + LTR1B LTR ERV1 1 745 -81 494 259 9 9 chr12 82146145 82146261 -62136228 + LTR28 LTR ERV1 905 1020 0 466 88 0 0 chr12 82146266 82146334 -62136155 + Tigger1 DNA MER2_type 1888 1955 -463 1206 275 97 31 chr12 82147007 82147502 -62134987 - L2 LINE L2 -4 3309 2793 2709 151 76 4 chr12 82147502 82147978 -62134511 + MER1A DNA MER1_type 1 510 -19 189 94 0 0 chr12 82147982 82148014 -62134475 + (TA)n Simple_repeat Simple_repeat 2 33 0 284 261 0 0 chr12 82148057 82148122 -62134367 - MER112 DNA MER1_type -195 65 1 385 274 0 75 chr12 82148134 82148280 -62134209 + MIR SINE MIR 49 183 -79 2170 269 111 12 chr12 82148384 82149437 -62133052 - L1M2 LINE L1 -4170 2679 1523 1826 244 57 48 chr12 82149439 82150020 -62132469 - L2 LINE L2 -556 2758 2173 21 0 0 0 chr12 82150087 82150108 -62132381 + AT_rich Low_complexity Low_complexity 1 21 0 727 280 69 110 chr12 82150810 82151436 -62131053 - HAL1 LINE L1 -1090 1417 818 1611 156 19 64 chr12 82151447 82151623 -62130866 - AluJb SINE Alu -12 300 143 2396 88 0 3 chr12 82151623 82151920 -62130569 - AluSq SINE Alu -17 296 1 1611 156 19 64 chr12 82151920 82152057 -62130432 - AluJb SINE Alu -169 143 1 543 220 63 89 chr12 82152259 82152450 -62130039 - MER58A DNA MER1_type -1 223 38 228 255 20 0 chr12 82153101 82153152 -62129337 + L2 LINE L2 3262 3313 0 881 96 0 0 chr12 82153201 82153316 -62129173 + AluSq/x SINE Alu 1 115 -197 323 269 128 59 chr12 82153386 82153605 -62128884 + MER102b DNA MER1_type 96 329 -12 1671 149 32 67 chr12 82153804 82154008 -62128481 - AluJb SINE Alu -7 305 114 2888 80 75 5 chr12 82154008 82154384 -62128105 + MLT2A1 LTR ERVL 1 410 -34 708 0 11 21 chr12 82154384 82154478 -62128011 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 2888 80 75 5 chr12 82154478 82154516 -62127973 + MLT2A1 LTR ERVL 410 444 0 1671 149 32 67 chr12 82154516 82154627 -62127862 - AluJb SINE Alu -198 114 1 2080 118 3 10 chr12 82154660 82154956 -62127533 + AluSx SINE Alu 1 294 -18 233 348 29 78 chr12 82155322 82155526 -62126963 + L2 LINE L2 2866 3059 -213 22 70 0 0 chr12 82155584 82155627 -62126862 + AT_rich Low_complexity Low_complexity 1 43 0 180 176 0 0 chr12 82155800 82155834 -62126655 + T-rich Low_complexity Low_complexity 1 34 0 219 114 0 0 chr12 82156186 82156221 -62126268 + (CA)n Simple_repeat Simple_repeat 2 36 0 493 162 0 113 chr12 82156427 82156569 -62125920 + MER58C DNA MER1_type 70 195 -20 8073 181 47 38 chr12 82156569 82158239 -62124250 + ERVL-D LTR ERVL 4007 5661 -103 2308 157 8 5 chr12 82158239 82158628 -62123861 - MLT1B LTR MaLR 0 390 1 2380 60 0 20 chr12 82158634 82158936 -62123553 - AluY SINE Alu -15 296 1 8073 181 47 38 chr12 82158936 82158993 -62123496 + ERVL-D LTR ERVL 5665 5756 -8 1879 188 55 18 chr12 82158993 82159392 -62123097 + MLT2D LTR ERVL 1 414 0 3160 137 91 40 chr12 82159624 82160316 -62122173 + LTR8A LTR ERV1 1 727 0 2037 306 84 32 chr12 82160583 82161595 -62120894 - L2 LINE L2 -144 3169 2107 2177 107 0 13 chr12 82162632 82162931 -62119558 + AluSx SINE Alu 2 296 -16 2363 100 0 0 chr12 82162982 82163283 -62119206 + AluSx SINE Alu 1 301 -11 553 221 16 16 chr12 82163421 82163545 -62118944 + Tigger3(Golem) DNA MER2_type 1 124 -2905 3948 116 8 11 chr12 82163545 82164174 -62118315 + MER41B LTR ERV1 1 627 -8 1445 135 27 31 chr12 82164201 82164461 -62118028 + Tigger3(Golem) DNA MER2_type 2771 3029 0 2394 84 0 3 chr12 82165691 82165990 -62116499 + AluSp SINE Alu 1 298 -15 247 333 78 7 chr12 82165991 82166132 -62116357 - L2 LINE L2 -17 3296 3146 5183 145 26 18 chr12 82166243 82167073 -62115416 - L1P4 LINE L1 -410 7189 6347 3077 100 7 0 chr12 82167073 82167512 -62114977 - L1PA14 LINE L1 -10 6151 5710 5183 145 26 18 chr12 82167512 82168150 -62114339 - L1P4 LINE L1 -1252 6347 5715 734 213 11 6 chr12 82168147 82168330 -62114159 - L1P4 LINE L1 -3251 4333 4150 * 6202 173 41 18 chr12 82168330 82169249 -62113240 - L1P4 LINE L1 -3303 4281 3385 1988 102 3 35 chr12 82169249 82169533 -62112956 - AluSg SINE Alu -22 288 14 6202 173 41 18 chr12 82169533 82170777 -62111712 - L1P4 LINE L1 -4199 3385 2055 1283 135 51 0 chr12 82170780 82170995 -62111494 - L1P4 LINE L1 -7355 226 1 290 162 77 60 chr12 82171017 82171134 -62111355 + L1M4 LINE L1 2861 2979 -3167 1555 184 102 14 chr12 82171208 82171572 -62110917 + MER34 LTR ERV1 1 396 -146 256 249 109 15 chr12 82171649 82171850 -62110639 + L1M4 LINE L1 3092 3311 -2835 2138 123 10 3 chr12 82171898 82172207 -62110282 - AluSx SINE Alu -1 311 1 2220 159 81 5 chr12 82172691 82173087 -62109402 - MSTB LTR MaLR 0 426 1 8207 165 66 10 chr12 82173087 82174650 -62107839 - MSTB-int LTR MaLR 0 1651 2 2350 146 44 5 chr12 82174651 82175061 -62107428 - MSTB LTR MaLR 0 426 1 292 297 40 0 chr12 82175504 82175605 -62106884 - L2 LINE L2 -13 3300 3196 326 357 18 18 chr12 82175605 82175717 -62106772 - L2 LINE L2 -215 3057 2946 3499 164 29 3 chr12 82176407 82177060 -62105429 + L1MB3 LINE L1 5510 6179 -4 2322 175 26 26 chr12 82177422 82177879 -62104610 + MSTB2 LTR MaLR 1 457 0 1659 177 43 0 chr12 82177945 82178227 -62104262 - AluJo SINE Alu -18 294 1 1575 206 37 20 chr12 82178570 82178924 -62103565 + MLT1A2 LTR MaLR 15 374 0 556 217 170 22 chr12 82179727 82179774 -62102715 + L1MC5 LINE L1 7299 7338 -623 2453 87 0 0 chr12 82179774 82180073 -62102416 - AluSx SINE Alu -13 299 1 556 217 170 22 chr12 82180073 82180343 -62102146 + L1MC5 LINE L1 7338 7663 -298 249 224 17 17 chr12 82180963 82181021 -62101468 - L2 LINE L2 0 3313 3256 421 250 35 17 chr12 82181021 82181137 -62101352 + L1ME3 LINE L1 5976 6093 -69 2199 94 4 0 chr12 82181728 82182004 -62100485 - AluSx SINE Alu -12 300 24 314 336 87 13 chr12 82182013 82182162 -62100327 + MIR3 SINE MIR 39 198 -10 1133 213 12 27 chr12 82182765 82183023 -62099466 - LTR40b LTR ERVL -207 255 2 2292 93 0 32 chr12 82183107 82183417 -62099072 + AluSg SINE Alu 1 300 -10 21 0 0 0 chr12 82183549 82183570 -62098919 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr12 82183740 82183764 -62098725 + (CA)n Simple_repeat Simple_repeat 1 24 0 818 147 0 7 chr12 82183804 82183940 -62098549 + FRAM SINE Alu 31 165 -11 241 196 103 82 chr12 82184550 82184647 -62097842 + MLT1J LTR MaLR 382 480 -31 250 349 249 6 chr12 82184753 82184922 -62097567 - L2 LINE L2 -424 2890 2681 * 397 241 0 51 chr12 82184903 82185040 -62097449 - MIR SINE MIR -38 224 95 947 237 84 84 chr12 82185043 82185116 -62097373 + L2 LINE L2 2860 2932 -381 1528 204 10 16 chr12 82185116 82185420 -62097069 - AluJo SINE Alu -10 302 1 947 237 84 84 chr12 82185420 82185772 -62096717 + L2 LINE L2 2931 3285 -28 1087 132 36 36 chr12 82186058 82186277 -62096212 - THE1C LTR MaLR 0 375 157 2537 57 0 0 chr12 82186818 82187118 -62095371 + AluY SINE Alu 1 300 -11 23 54 0 0 chr12 82188122 82188159 -62094330 + AT_rich Low_complexity Low_complexity 1 37 0 1525 245 97 28 chr12 82189798 82191115 -62091374 + L1ME2 LINE L1 4709 6155 -9 742 132 91 0 chr12 82191264 82191385 -62091104 + AluSq/x SINE Alu 1 132 -180 190 387 61 17 chr12 82191673 82191854 -62090635 - L2 LINE L2 -216 3056 2868 34 0 0 0 chr12 82192111 82192145 -62090344 + AT_rich Low_complexity Low_complexity 1 34 0 2220 132 0 0 chr12 82192685 82192996 -62089493 + AluSx SINE Alu 1 311 -1 2109 123 17 0 chr12 82193724 82194025 -62088464 + AluSx SINE Alu 1 306 -6 227 193 53 0 chr12 82194514 82194571 -62087918 + A-rich Low_complexity Low_complexity 6 65 0 277 204 174 31 chr12 82195299 82195397 -62087092 - MIR SINE MIR -66 142 31 360 0 0 0 chr12 82195545 82195585 -62086904 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 54 0 0 chr12 82195717 82195754 -62086735 + AT_rich Low_complexity Low_complexity 1 37 0 1926 137 11 7 chr12 82196254 82196571 -62085918 + AluSx SINE Alu 1 318 0 2283 112 3 3 chr12 82196630 82196943 -62085546 + AluSq SINE Alu 1 313 0 2313 100 3 0 chr12 82196947 82197256 -62085233 + AluSp SINE Alu 1 310 -3 206 346 45 64 chr12 82197442 82197598 -62084891 + L2 LINE L2 2242 2394 -920 * 807 183 0 0 chr12 82197512 82197649 -62084840 - MER5A DNA MER1_type -11 178 42 348 275 113 21 chr12 82197524 82197666 -62084823 + MER5A DNA MER1_type 35 189 0 * 551 322 84 22 chr12 82197677 82198034 -62084455 + L2 LINE L2 2599 2977 -337 209 303 34 87 chr12 82198059 82198267 -62084222 + L2 LINE L2 3078 3274 -39 666 293 49 44 chr12 82199128 82199538 -62082951 + MARNA DNA Mariner 53 464 -122 361 314 124 26 chr12 82200014 82200167 -62082322 - MIR3 SINE MIR -31 177 10 1096 204 17 9 chr12 82200986 82201217 -62081272 - MER8 DNA MER2_type -1 238 6 335 118 0 66 chr12 82201555 82201631 -62080858 - L1MA9 LINE L1 -1 6311 6241 227 257 30 50 chr12 82203870 82203971 -62078518 + HAL1 LINE L1 811 909 -1598 915 265 49 72 chr12 82204226 82204478 -62078011 + HAL1 LINE L1 1251 1507 -1000 1938 100 61 0 chr12 82204478 82204739 -62077750 - AluSg SINE Alu -15 295 19 915 265 49 72 chr12 82204739 82205055 -62077434 + HAL1 LINE L1 1507 1806 -701 267 211 67 33 chr12 82205383 82205473 -62077016 + HAL1 LINE L1 2072 2164 -343 1487 106 55 0 chr12 82205544 82205761 -62076728 + MER30 DNA MER1_type 1 229 -1 905 183 232 37 chr12 82205875 82206116 -62076373 + AluJo SINE Alu 1 288 -14 1122 169 58 5 chr12 82206355 82206562 -62075927 + MER20 DNA MER1_type 1 218 -1 408 312 100 40 chr12 82206882 82207183 -62075306 - MLT1J2 LTR MaLR -5 445 127 1996 142 0 10 chr12 82207202 82207513 -62074976 + AluSx SINE Alu 4 311 -1 297 164 33 16 chr12 82207815 82207876 -62074613 - MIR SINE MIR -181 81 20 1821 164 0 42 chr12 82208438 82208750 -62073739 + AluJb SINE Alu 1 299 -13 2193 124 0 9 chr12 82208750 82209065 -62073424 + AluSx SINE Alu 1 312 0 313 244 26 158 chr12 82209441 82209707 -62072782 + MIR SINE MIR 5 235 -27 266 303 79 24 chr12 82209740 82209905 -62072584 - L3b LINE CR1 -151 1432 1259 271 233 139 12 chr12 82210663 82210749 -62071740 - MIR SINE MIR -49 213 117 213 378 102 8 chr12 82210720 82210847 -62071642 - MIR3 SINE MIR -62 146 8 * 313 186 0 34 chr12 82211252 82211311 -62071178 - L2 LINE L2 -62 3251 3195 24 0 0 0 chr12 82213872 82213896 -62068593 + AT_rich Low_complexity Low_complexity 1 24 0 316 139 25 184 chr12 82213926 82214016 -62068473 - MER104 DNA Tc2 -1762 136 80 2182 117 3 0 chr12 82214016 82214314 -62068175 - AluSx SINE Alu -13 299 1 316 139 25 184 chr12 82214314 82214381 -62068108 - MER104 DNA Tc2 -1818 80 4 408 232 32 52 chr12 82214707 82214862 -62067627 - MER112 DNA MER1_type -101 159 8 236 264 28 0 chr12 82216052 82216124 -62066365 + MLT1I LTR MaLR 98 171 -238 354 23 0 0 chr12 82216958 82217001 -62065488 + (CA)n Simple_repeat Simple_repeat 2 44 0 981 295 43 63 chr12 82217097 82217253 -62065236 + L1MEd LINE L1 411 569 -5741 2254 91 7 3 chr12 82217253 82217549 -62064940 - AluSx SINE Alu -10 302 6 981 295 43 63 chr12 82217549 82217812 -62064677 + L1MEd LINE L1 569 836 -5474 2026 93 72 4 chr12 82217812 82218091 -62064398 + AluSx SINE Alu 1 298 -14 981 295 43 63 chr12 82218091 82218909 -62063580 + L1MEd LINE L1 836 1662 -4648 1845 172 36 3 chr12 82218909 82219211 -62063278 + AluJb SINE Alu 1 312 0 26 50 0 0 chr12 82219323 82219363 -62063126 + AT_rich Low_complexity Low_complexity 1 40 0 872 162 68 0 chr12 82220283 82220431 -62062058 - FRAM SINE Alu -15 161 4 529 229 55 55 chr12 82221557 82221850 -62060639 + L1MC5 LINE L1 7388 7680 -281 211 333 13 26 chr12 82222625 82222703 -62059786 + MIR SINE MIR 3 79 -183 1745 192 0 10 chr12 82223243 82223551 -62058938 + AluJo SINE Alu 1 305 -7 259 325 73 5 chr12 82223890 82224081 -62058408 - L1MC4 LINE L1 -742 7300 7097 306 264 11 0 chr12 82224091 82224182 -62058307 - L1MC5 LINE L1 -864 7097 7006 262 243 22 59 chr12 82224260 82224396 -62058093 + L1ME4a LINE L1 5870 6000 -121 232 188 0 0 chr12 82224504 82224552 -62057937 - MER117 DNA MER1_type -79 118 71 267 295 158 47 chr12 82224780 82225102 -62057387 + L2 LINE L2 2003 2360 -954 1523 66 5 19 chr12 82225263 82225476 -62057013 - THE1B LTR MaLR 0 364 155 2297 104 0 3 chr12 82225476 82225775 -62056714 + AluSx SINE Alu 1 298 -14 2410 76 0 7 chr12 82225776 82226077 -62056412 + AluSq SINE Alu 1 299 -14 535 288 84 35 chr12 82226294 82226520 -62055969 + MIR SINE MIR 13 249 -13 1971 111 20 10 chr12 82227105 82227402 -62055087 + AluSc SINE Alu 1 300 -9 1188 99 0 0 chr12 82227402 82227564 -62054925 - THE1B LTR MaLR -200 164 3 10153 104 16 31 chr12 82227571 82229169 -62053320 - THE1B-int LTR MaLR -6 1574 1 952 88 4 6 chr12 82229169 82229314 -62053175 - THE1B LTR MaLR 0 364 214 6953 216 40 36 chr12 82229374 82229541 -62052948 + L1MB1 LINE L1 2136 2301 -3845 2092 121 45 0 chr12 82229541 82229830 -62052659 + AluSx SINE Alu 3 304 -8 6953 216 40 36 chr12 82229830 82229936 -62052553 + L1MB1 LINE L1 2301 2405 -3741 2844 90 78 7 chr12 82229936 82229976 -62052513 - MLT2A2 LTR ERVL 0 453 417 342 98 0 0 chr12 82229976 82230027 -62052462 + (TA)n Simple_repeat Simple_repeat 2 52 0 2844 90 78 7 chr12 82230027 82230409 -62052080 - MLT2A2 LTR ERVL -36 417 1 6953 216 40 36 chr12 82230409 82230792 -62051697 + L1MB1 LINE L1 2405 2785 -3361 1989 127 17 10 chr12 82230792 82231084 -62051405 + AluSx SINE Alu 11 304 -8 6953 216 40 36 chr12 82231084 82231252 -62051237 + L1MB1 LINE L1 2785 2951 -3195 2180 116 3 0 chr12 82231252 82231544 -62050945 + AluSg1 SINE Alu 1 293 -16 6953 216 40 36 chr12 82231544 82232733 -62049756 + L1MB1 LINE L1 2951 4163 -1983 2182 113 7 13 chr12 82232733 82233043 -62049446 + AluSx SINE Alu 1 308 -4 6953 216 40 36 chr12 82233043 82233152 -62049337 + L1MB1 LINE L1 4163 4270 -1876 285 238 89 40 chr12 82233225 82233326 -62049163 + L2 LINE L2 3162 3267 -5 2937 177 19 58 chr12 82233520 82234105 -62048384 + L1MB1 LINE L1 4256 4862 -1284 1661 69 0 15 chr12 82234105 82234309 -62048180 - AluY SINE Alu -110 201 1 2937 177 19 58 chr12 82234309 82234339 -62048150 + L1MB1 LINE L1 4862 4892 -1254 2166 138 0 0 chr12 82234339 82234628 -62047861 - AluSx SINE Alu -23 289 1 1598 201 24 10 chr12 82234630 82234923 -62047566 - AluJo SINE Alu -15 297 1 2937 177 19 58 chr12 82234923 82235042 -62047447 + L1MB1 LINE L1 4893 4965 -1181 2227 104 0 0 chr12 82235043 82235331 -62047158 + AluSc SINE Alu 22 309 0 2338 67 13 13 chr12 82235424 82235737 -62046752 + AluSp SINE Alu 1 313 0 520 170 0 0 chr12 82235741 82235835 -62046654 + FLAM_A SINE Alu 43 136 -6 503 197 34 0 chr12 82235843 82235960 -62046529 + L1MB1 LINE L1 5010 5130 -1016 3203 139 20 48 chr12 82235965 82236513 -62045976 + L1MB1 LINE L1 5574 6136 -32 2164 88 42 3 chr12 82236513 82236798 -62045691 + AluY SINE Alu 3 298 -13 3203 139 20 48 chr12 82236798 82236818 -62045671 + L1MB1 LINE L1 6136 6128 -40 2230 98 0 0 chr12 82236818 82237104 -62045385 + AluSg SINE Alu 2 287 -23 3203 139 20 48 chr12 82237104 82237140 -62045349 + L1MB1 LINE L1 6127 6162 -6 294 271 93 0 chr12 82237260 82237367 -62045122 - MLT1J LTR MaLR -370 141 25 247 324 157 10 chr12 82237439 82237541 -62044948 + L2 LINE L2 3134 3250 -22 1672 213 14 6 chr12 82237798 82238157 -62044332 - MLT1A1 LTR MaLR 0 365 4 1751 87 0 0 chr12 82238618 82238836 -62043653 + AluSg/x SINE Alu 83 300 -12 1144 134 19 19 chr12 82239029 82239245 -62043244 + AluSg/x SINE Alu 82 297 -13 1622 182 18 11 chr12 82239308 82239594 -62042895 - AluJo SINE Alu -24 288 1 877 244 0 0 chr12 82239827 82239987 -62042502 + AluJb SINE Alu 136 295 -17 194 167 28 0 chr12 82239997 82240033 -62042456 - L2 LINE L2 -18 3295 3259 373 324 50 22 chr12 82240427 82240609 -62041880 - MLT1I LTR MaLR -204 205 19 365 349 47 13 chr12 82240625 82240774 -62041715 - MIR SINE MIR -98 164 11 205 175 0 0 chr12 82240834 82240874 -62041615 + (CAATT)n Simple_repeat Simple_repeat 3 42 0 1671 166 158 48 chr12 82240997 82241370 -62041119 + MLT2D LTR ERVL 1 414 0 3478 96 0 0 chr12 82242128 82242587 -62039902 - L1PA13 LINE L1 -1 6162 5704 190 347 14 0 chr12 82242719 82242791 -62039698 + MIR SINE MIR 45 117 -91 323 240 16 128 chr12 82242822 82242947 -62039542 - L1ME1 LINE L1 -127 6039 5929 2271 116 3 0 chr12 82242958 82243268 -62039221 - AluSq SINE Alu -2 311 1 22 0 0 0 chr12 82243338 82243360 -62039129 + AT_rich Low_complexity Low_complexity 1 22 0 1798 134 0 0 chr12 82243422 82243668 -62038821 + AluSx SINE Alu 1 246 -66 610 241 67 67 chr12 82243688 82243912 -62038577 + MIR SINE MIR 20 243 -19 455 335 5 30 chr12 82244719 82244916 -62037573 - LTR16C LTR ERVL 0 491 300 2143 218 24 125 chr12 82244956 82245613 -62036876 + MLT1E LTR MaLR 1 591 -2 1661 236 14 8 chr12 82245615 82246101 -62036388 + MLT1E-int LTR MaLR 1 605 -766 305 343 12 18 chr12 82246317 82246486 -62036003 + MLT1E-int LTR MaLR 720 887 -484 906 223 35 135 chr12 82246595 82246973 -62035516 + MLT1E-int LTR MaLR 961 1294 -77 2360 89 33 45 chr12 82246973 82247332 -62035157 + THE1A LTR MaLR 1 355 0 906 223 35 135 chr12 82247332 82247375 -62035114 + MLT1E-int LTR MaLR 1294 1340 -31 2202 241 73 25 chr12 82247388 82247952 -62034537 + MLT1E LTR MaLR 3 593 0 2710 344 56 25 chr12 82248185 82248729 -62033760 - ERVL LTR ERVL -482 5282 4756 2389 105 0 0 chr12 82248729 82249033 -62033456 - AluSx SINE Alu -8 304 1 2710 344 56 25 chr12 82249033 82249960 -62032529 - ERVL LTR ERVL -1008 4756 3766 3930 204 42 7 chr12 82250035 82250855 -62031634 - Charlie1a DNA MER1_type -603 852 5 24 0 0 0 chr12 82251211 82251235 -62031254 + AT_rich Low_complexity Low_complexity 1 24 0 388 288 135 29 chr12 82252130 82252341 -62030148 - MIR SINE MIR -11 251 15 3809 136 13 2 chr12 82253634 82254155 -62028334 - MER1A DNA MER1_type 0 527 1 270 0 0 0 chr12 82254163 82254193 -62028296 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2170 90 0 7 chr12 82254199 82254477 -62028012 - AluSp SINE Alu -37 276 1 21 0 0 0 chr12 82255349 82255370 -62027119 + AT_rich Low_complexity Low_complexity 1 21 0 1496 167 46 95 chr12 82255710 82256099 -62026390 - MLT1A2 LTR MaLR -4 370 1 1761 195 0 0 chr12 82256169 82256471 -62026018 + AluJb SINE Alu 1 302 -10 1085 145 17 17 chr12 82256892 82257071 -62025418 - MSTC LTR MaLR -247 181 3 2378 92 3 9 chr12 82257212 82257527 -62024962 + AluSp SINE Alu 1 313 0 1873 169 3 3 chr12 82257538 82257828 -62024661 + AluJb SINE Alu 1 290 -22 24 32 0 0 chr12 82257828 82257859 -62024630 + AT_rich Low_complexity Low_complexity 1 31 0 919 216 18 0 chr12 82258439 82258610 -62023879 + MER63A DNA MER1_type 36 209 -1 25 0 0 0 chr12 82258712 82258737 -62023752 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr12 82258777 82258798 -62023691 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 891 171 0 0 chr12 82258805 82258934 -62023555 - FRAM SINE Alu -30 146 18 615 160 0 0 chr12 82258988 82259082 -62023407 - AluJo SINE Alu -175 137 44 412 294 343 7 chr12 82259462 82259873 -62022616 + L2 LINE L2 2239 2787 -527 251 356 19 0 chr12 82259955 82260059 -62022430 + L2 LINE L2 2802 2907 -407 1964 138 0 3 chr12 82260462 82260767 -62021722 - AluSx SINE Alu 0 304 1 309 169 49 39 chr12 82260910 82260999 -62021490 - MLT1G3 LTR MaLR 0 590 462 535 245 29 7 chr12 82261042 82261181 -62021308 - MLT1G3 LTR MaLR -199 331 190 * 1241 240 11 0 chr12 82261176 82261443 -62021046 + LTR16A LTR ERVL 181 450 0 739 314 79 20 chr12 82262017 82262358 -62020131 + L2 LINE L2 2953 3313 0 2649 130 53 10 chr12 82262872 82263288 -62019201 - MER61C LTR ERV1 0 434 1 4476 126 8 81 chr12 82263932 82264367 -62018122 + MER4E LTR ERV1 1 466 -300 2544 50 0 7 chr12 82264367 82264667 -62017822 + AluY SINE Alu 1 298 -13 4476 126 8 81 chr12 82264667 82264683 -62017806 + MER4E LTR ERV1 466 482 -284 1933 136 44 0 chr12 82264683 82264977 -62017512 + AluSx SINE Alu 2 308 -4 4476 126 8 81 chr12 82264977 82265350 -62017139 + MER4E LTR ERV1 482 766 0 1014 231 0 32 chr12 82266538 82266759 -62015730 - MLT1G LTR MaLR -294 296 83 970 256 44 22 chr12 82266791 82267151 -62015338 - L1MDa LINE L1 -4366 2174 1807 * 2184 259 63 45 chr12 82267123 82267429 -62015060 - L1ME LINE L1 -4535 2005 1706 245 29 29 0 chr12 82267429 82267463 -62015026 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2184 259 63 45 chr12 82267463 82267911 -62014578 - L1ME LINE L1 -4834 1706 1246 2439 151 31 0 chr12 82267911 82268296 -62014193 + L1PA16 LINE L1 5759 6155 -11 2184 259 63 45 chr12 82268296 82268560 -62013929 - L1ME LINE L1 -5294 1246 988 348 284 17 9 chr12 82268593 82268709 -62013780 - L1ME LINE L1 -5518 1025 909 373 369 27 27 chr12 82269237 82269530 -62012959 - L1ME LINE L1 -6210 330 38 2315 137 123 8 chr12 82269946 82270327 -62012162 + MSTA LTR MaLR 4 428 0 235 305 0 0 chr12 82270551 82270610 -62011879 - L3 LINE CR1 -12 1565 1507 2238 103 3 3 chr12 82270700 82271002 -62011487 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr12 82271106 82271129 -62011360 + AT_rich Low_complexity Low_complexity 1 23 0 291 289 255 39 chr12 82271601 82271805 -62010684 + MIR SINE MIR 15 262 0 1814 141 10 50 chr12 82271917 82272241 -62010248 - AluJb SINE Alu 0 312 1 22 0 0 0 chr12 82272759 82272781 -62009708 + AT_rich Low_complexity Low_complexity 1 22 0 411 274 17 8 chr12 82272850 82272967 -62009522 + MIR3 SINE MIR 37 154 -54 2349 91 0 0 chr12 82275016 82275314 -62007175 + AluSg SINE Alu 1 298 -12 652 215 57 13 chr12 82276702 82276860 -62005629 + MIR SINE MIR 97 261 -1 1896 162 6 16 chr12 82277732 82278046 -62004443 - AluJo SINE Alu -1 311 1 300 27 0 0 chr12 82278162 82278199 -62004290 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 419 271 78 36 chr12 82278438 82278604 -62003885 + MIR SINE MIR 56 228 -34 3165 167 24 6 chr12 82278695 82279239 -62003250 - MER68 LTR ERV1 -8 554 1 364 260 172 30 chr12 82279290 82279459 -62003030 + Charlie8 DNA MER1_type 73 265 -2152 22 35 0 0 chr12 82279862 82279891 -62002598 + AT_rich Low_complexity Low_complexity 1 29 0 2821 228 111 69 chr12 82280638 82281621 -62000868 - L2 LINE L2 0 3313 2186 1644 161 32 76 chr12 82281621 82281937 -62000552 + AluJo SINE Alu 1 302 -10 2821 228 111 69 chr12 82281937 82282572 -61999917 - L2 LINE L2 -1127 2186 1579 24 0 0 0 chr12 82283871 82283895 -61998594 + AT_rich Low_complexity Low_complexity 1 24 0 252 239 0 0 chr12 82284103 82284149 -61998340 - MER58 DNA MER1_type -2185 235 190 240 35 0 0 chr12 82284150 82284179 -61998310 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1704 145 50 4 chr12 82284186 82284448 -61998041 - AluSg SINE Alu -36 274 1 223 224 0 41 chr12 82284755 82284804 -61997685 - L2 LINE L2 -13 3259 3213 1211 228 80 31 chr12 82284804 82284974 -61997515 + MER58B DNA MER1_type 1 161 -2259 2320 111 0 0 chr12 82284974 82285281 -61997208 + AluSx SINE Alu 1 307 -5 1211 228 80 31 chr12 82285281 82285435 -61997054 + MER58B DNA MER1_type 161 341 0 2343 71 0 23 chr12 82285573 82285881 -61996608 + AluY SINE Alu 1 301 -10 210 256 0 0 chr12 82285890 82285933 -61996556 - MIR SINE MIR -141 121 79 519 275 20 8 chr12 82286143 82286272 -61996217 - MIR SINE MIR -82 126 23 1094 219 17 17 chr12 82286295 82286532 -61995957 - MIR SINE MIR -14 248 12 232 397 21 0 chr12 82286537 82286678 -61995811 + L3 LINE CR1 431 574 -1003 727 249 62 59 chr12 82286682 82286955 -61995534 + Charlie7 DNA MER1_type 216 489 -2123 807 251 45 6 chr12 82287327 82287506 -61994983 + MER5A DNA MER1_type 1 186 -3 568 227 110 12 chr12 82287642 82287746 -61994743 + MER5A DNA MER1_type 4 131 -58 599 189 71 24 chr12 82287746 82287873 -61994616 - FLAM_C SINE Alu 0 133 1 568 227 110 12 chr12 82287873 82287931 -61994558 + MER5A DNA MER1_type 131 182 -7 487 233 45 8 chr12 82288558 82288691 -61993798 + L1ME4a LINE L1 5983 6120 -1 682 209 43 18 chr12 82288712 82288875 -61993614 - L1ME2 LINE L1 -6 6158 5992 2361 81 3 0 chr12 82289539 82289834 -61992655 - AluSp SINE Alu -17 296 1 278 308 85 8 chr12 82289840 82289970 -61992519 - L2 LINE L2 -13 3300 3161 1429 213 13 16 chr12 82290110 82290415 -61992074 - AluJo SINE Alu -8 304 1 428 214 145 15 chr12 82290482 82290613 -61991876 + L1ME4a LINE L1 5973 6120 -1 514 273 81 6 chr12 82290825 82290997 -61991492 - MIR SINE MIR -29 233 49 4174 117 20 13 chr12 82291166 82291765 -61990724 - LTR26 LTR ERV1 0 603 1 1857 161 0 3 chr12 82291854 82292145 -61990344 - AluJb SINE Alu -22 290 1 2226 121 0 7 chr12 82292399 82292705 -61989784 - AluSx SINE Alu -8 304 1 1710 195 0 7 chr12 82293311 82293609 -61988880 + AluJb SINE Alu 1 296 -16 464 271 9 64 chr12 82293609 82293741 -61988748 - HAL1 LINE L1 -1 2506 2389 2254 164 16 19 chr12 82293741 82294107 -61988382 - MLT1A1 LTR MaLR 0 365 1 464 271 9 64 chr12 82294107 82294192 -61988297 - HAL1 LINE L1 -118 2389 2301 370 263 179 16 chr12 82294798 82294988 -61987501 + LTR16C LTR ERVL 233 453 -38 2301 99 0 0 chr12 82295083 82295375 -61987114 + AluSq SINE Alu 5 296 -17 1466 236 103 41 chr12 82295375 82296046 -61986443 - HAL1 LINE L1 -247 2260 1451 592 101 8 47 chr12 82296046 82296175 -61986314 + (TTTC)n Simple_repeat Simple_repeat 4 127 0 2007 138 10 0 chr12 82296178 82296476 -61986013 - AluJo SINE Alu -9 303 3 280 283 161 26 chr12 82296481 82296720 -61985769 - HAL1 LINE L1 -1045 1462 1257 185 0 40 0 chr12 82296720 82296745 -61985744 + (TG)n Simple_repeat Simple_repeat 2 27 0 1726 138 98 0 chr12 82296751 82297027 -61985462 - AluJo SINE Alu -8 304 2 280 283 161 26 chr12 82297027 82297158 -61985331 - HAL1 LINE L1 -1254 1253 1034 382 346 51 33 chr12 82297163 82297498 -61984991 - HAL1 LINE L1 -2008 499 159 2515 57 3 16 chr12 82297601 82297916 -61984573 - AluY SINE Alu 0 311 1 774 281 52 13 chr12 82298037 82298268 -61984221 - MIR SINE MIR -21 241 2 995 135 0 0 chr12 82298607 82298740 -61983749 + FRAM SINE Alu 17 149 -27 2091 109 0 11 chr12 82298750 82299071 -61983418 + AluSx SINE Alu 1 318 0 198 0 0 0 chr12 82299482 82299504 -61982985 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 8514 168 70 11 chr12 82299655 82301183 -61981306 + MER52A LTR ERV1 138 1755 0 684 223 72 0 chr12 82301589 82301728 -61980761 - MIR SINE MIR -113 149 1 826 148 0 70 chr12 82301854 82301996 -61980493 - FLAM_A SINE Alu 0 133 2 274 191 59 0 chr12 82302049 82302117 -61980372 + MIR SINE MIR 147 218 -44 243 295 13 0 chr12 82302366 82302444 -61980045 + MIR SINE MIR 148 226 -36 506 304 62 10 chr12 82302563 82302757 -61979732 - L3 LINE CR1 -111 1466 1263 1888 187 43 55 chr12 82302795 82303288 -61979201 + Charlie4a DNA MER1_type 21 507 -1 249 238 226 12 chr12 82303288 82303372 -61979117 - L3 LINE CR1 -284 1293 1192 229 337 47 52 chr12 82303684 82303856 -61978633 - MIR SINE MIR -33 229 59 1179 38 0 0 chr12 82304480 82304612 -61977877 + L1PA3 LINE L1 6021 6152 -3 28 0 0 0 chr12 82304612 82304640 -61977849 + AT_rich Low_complexity Low_complexity 1 28 0 275 264 58 11 chr12 82306268 82306355 -61976134 + MIR3 SINE MIR 115 205 -3 423 0 0 0 chr12 82306512 82306559 -61975930 + (TG)n Simple_repeat Simple_repeat 2 48 0 1693 171 7 34 chr12 82308484 82308777 -61973712 + AluJo SINE Alu 3 287 -25 1911 136 45 0 chr12 82309301 82309588 -61972901 - AluSx SINE Alu -12 300 1 243 0 0 0 chr12 82309813 82309840 -61972649 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2200 98 0 0 chr12 82309844 82310120 -61972369 - AluSg SINE Alu -34 276 1 219 218 0 0 chr12 82310531 82310586 -61971903 + CT-rich Low_complexity Low_complexity 2 56 0 743 264 87 44 chr12 82310607 82311180 -61971309 + L1M4 LINE L1 4246 4843 -1303 326 335 71 64 chr12 82311283 82311346 -61971143 + L1M4 LINE L1 4906 4967 -1179 1167 195 8 29 chr12 82311346 82311587 -61970902 - MER106A DNA MER1_type 0 236 1 326 335 71 64 chr12 82311587 82311962 -61970527 + L1M4 LINE L1 4967 5347 -799 224 379 50 7 chr12 82311985 82312125 -61970364 - L2 LINE L2 -2507 807 662 685 195 149 0 chr12 82312227 82312381 -61970108 + LTR40b LTR ERVL 3 179 -283 919 175 0 0 chr12 82312443 82312586 -61969903 + AluJo SINE Alu 1 143 -169 6735 122 13 25 chr12 82312589 82312820 -61969669 + L1PB1 LINE L1 4567 4799 -1352 2381 78 3 0 chr12 82312820 82313114 -61969375 + AluSx SINE Alu 2 296 -16 6735 122 13 25 chr12 82313114 82313932 -61968557 + L1PB1 LINE L1 4799 5585 -566 2160 118 0 3 chr12 82313932 82314229 -61968260 + AluSg SINE Alu 1 296 -14 6735 122 13 25 chr12 82314229 82314788 -61967701 + L1PB1 LINE L1 5585 6150 -1 983 183 6 11 chr12 82314790 82314965 -61967524 + AluJo SINE Alu 120 293 -19 870 218 58 25 chr12 82314965 82315208 -61967281 + LTR40b LTR ERVL 185 435 -27 21 0 0 0 chr12 82315738 82315759 -61966730 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr12 82315774 82315797 -61966692 + (A)n Simple_repeat Simple_repeat 1 23 0 182 289 0 0 chr12 82315846 82315891 -61966598 - L2 LINE L2 -2859 455 411 335 267 47 0 chr12 82316717 82316803 -61965686 + L1MC4 LINE L1 6614 6703 -1339 2365 107 7 0 chr12 82317012 82317320 -61965169 - AluSx SINE Alu -2 310 1 787 307 69 11 chr12 82318169 82318509 -61963980 - MLT1J LTR MaLR -51 460 101 1824 184 8 20 chr12 82318509 82318867 -61963622 + MLT1A1 LTR MaLR 1 354 -11 350 245 85 19 chr12 82318870 82318976 -61963513 - MLT1J LTR MaLR -398 113 1 1501 170 4 0 chr12 82319051 82319281 -61963208 + AluJb SINE Alu 1 231 -81 188 206 33 141 chr12 82319688 82319780 -61962709 - L3 LINE CR1 -102 1475 1394 450 0 0 0 chr12 82320909 82320959 -61961530 + (TG)n Simple_repeat Simple_repeat 2 51 0 225 0 0 0 chr12 82321138 82321163 -61961326 + (T)n Simple_repeat Simple_repeat 1 25 0 2392 103 0 3 chr12 82322494 82322804 -61959685 - AluSc SINE Alu 0 309 1 1664 157 8 0 chr12 82322878 82323145 -61959344 - AluJo SINE Alu -16 296 28 1823 165 0 3 chr12 82323668 82323982 -61958507 - AluJo SINE Alu 0 313 1 2336 124 30 36 chr12 82324089 82324453 -61958036 + THE1B LTR MaLR 3 364 0 263 153 102 0 chr12 82324641 82324700 -61957789 - LTR37B LTR ERV1 -3 465 401 277 318 0 0 chr12 82325371 82325434 -61957055 + MIR SINE MIR 2 64 -198 967 220 37 5 chr12 82325445 82325663 -61956826 + MIR SINE MIR 28 252 -10 891 134 0 8 chr12 82326061 82326188 -61956301 + AluSq/x SINE Alu 1 126 -186 216 0 0 0 chr12 82326188 82326212 -61956277 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 423 254 61 0 chr12 82326212 82326326 -61956163 - L1M4 LINE L1 -1300 4846 4726 1687 177 7 25 chr12 82326342 82326625 -61955864 + AluJo SINE Alu 5 282 -30 195 42 0 0 chr12 82326627 82326651 -61955838 + (CAT)n Simple_repeat Simple_repeat 2 25 0 346 187 61 2 chr12 82326728 82326802 -61955687 + MLT1G LTR MaLR 1 79 -478 1828 196 25 50 chr12 82326851 82327248 -61955241 + MLT1B LTR MaLR 1 387 -3 765 181 84 12 chr12 82327258 82327424 -61955065 + L1MC4a LINE L1 7561 7738 -70 35 24 0 0 chr12 82327482 82327524 -61954965 + AT_rich Low_complexity Low_complexity 1 42 0 516 256 166 14 chr12 82327660 82328015 -61954474 - L1MDa LINE L1 -4441 1688 1280 521 301 111 53 chr12 82328032 82328125 -61954364 - L1MDa LINE L1 -4862 1257 1171 2369 68 10 0 chr12 82328125 82328417 -61954072 + AluY SINE Alu 1 295 -16 521 301 111 53 chr12 82328417 82328775 -61953714 - L1MDa LINE L1 -4948 1171 780 672 30 91 18 chr12 82328779 82328944 -61953545 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 630 116 56 8 chr12 82328955 82329450 -61953039 + (TTATA)n Simple_repeat Simple_repeat 1 518 0 23 0 0 0 chr12 82329565 82329588 -61952901 + AT_rich Low_complexity Low_complexity 1 23 0 197 142 26 44 chr12 82329603 82329716 -61952773 + (TATAA)n Simple_repeat Simple_repeat 2 112 0 539 102 40 28 chr12 82329739 82329915 -61952574 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 563 226 42 90 chr12 82330357 82330569 -61951920 + L2 LINE L2 3112 3313 0 1683 211 34 17 chr12 82330717 82331073 -61951416 + MLT1A1 LTR MaLR 1 362 -3 700 287 110 64 chr12 82331330 82331352 -61951137 - L2 LINE L2 -1 3312 3292 225 0 0 0 chr12 82331352 82331377 -61951112 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 700 287 110 64 chr12 82331377 82331523 -61950966 - L2 LINE L2 -21 3292 3154 456 35 0 0 chr12 82331523 82331581 -61950908 + (TC)n Simple_repeat Simple_repeat 1 58 0 1824 135 0 4 chr12 82331587 82331847 -61950642 - AluSx SINE Alu -38 274 16 700 287 110 64 chr12 82331847 82332256 -61950233 - L2 LINE L2 -163 3150 2708 2561 52 0 10 chr12 82332260 82332569 -61949920 - AluY SINE Alu -5 306 1 2155 125 3 0 chr12 82333006 82333310 -61949179 - AluSx SINE Alu -7 305 1 258 292 14 14 chr12 82333626 82333698 -61948791 + MIR SINE MIR 3 74 -188 433 293 64 125 chr12 82333783 82334359 -61948130 + LTR67 LTR ERVL 14 554 -3 274 330 97 0 chr12 82334603 82334706 -61947783 + L2 LINE L2 3150 3262 -10 770 269 145 48 chr12 82334996 82335390 -61947099 - L2 LINE L2 0 3313 2882 2277 109 3 0 chr12 82335390 82335693 -61946796 + AluSx SINE Alu 1 304 -8 1795 248 87 35 chr12 82335702 82335899 -61946590 + MLT1E LTR MaLR 1 186 -407 2059 237 28 49 chr12 82335899 82336473 -61946016 + MER68 LTR ERV1 1 562 0 1795 248 87 35 chr12 82336473 82336839 -61945650 + MLT1E LTR MaLR 186 593 0 253 331 138 7 chr12 82336840 82336985 -61945504 - L2 LINE L2 -427 2887 2724 687 272 6 12 chr12 82337016 82337185 -61945304 - MER5B DNA MER1_type -4 174 7 1858 163 3 7 chr12 82337574 82337868 -61944621 - AluJb SINE Alu -19 293 1 982 185 0 23 chr12 82338155 82338328 -61944161 + AluJb SINE Alu 137 305 -7 571 277 77 23 chr12 82338659 82338879 -61943610 - L2 LINE L2 0 3313 3082 565 260 153 34 chr12 82338937 82339172 -61943317 + MER102b DNA MER1_type 54 316 -25 1656 193 7 0 chr12 82339371 82339661 -61942828 - AluJb SINE Alu -20 292 1 589 210 228 31 chr12 82339778 82339940 -61942549 + MER69 DNA AcHobo 95 288 -2238 * 1428 213 83 23 chr12 82339924 82340309 -61942180 + MER69 DNA AcHobo 1457 1864 -662 1445 222 211 43 chr12 82340331 82340957 -61941532 + LTR41 LTR ERVL 43 773 0 * 2342 177 61 94 chr12 82340957 82341481 -61941008 + MER69 DNA AcHobo 1863 2403 -123 3291 137 61 8 chr12 82341481 82342005 -61940484 - MER41C LTR ERV1 0 554 3 1504 174 53 32 chr12 82342005 82342287 -61940202 + AluJo SINE Alu 4 291 -21 2342 177 61 94 chr12 82342287 82342436 -61940053 + MER69 DNA AcHobo 2401 2515 -11 1683 195 0 19 chr12 82344069 82344387 -61938102 - AluJb SINE Alu 0 312 1 3339 161 13 36 chr12 82344410 82345013 -61937476 - L1PA16 LINE L1 -8 6158 5570 1969 68 0 0 chr12 82345296 82345530 -61936959 - AluY SINE Alu -77 234 1 464 304 7 20 chr12 82345630 82345778 -61936711 + MER91A DNA MER1_type 4 149 -47 194 312 291 7 chr12 82346521 82346662 -61935827 + L2 LINE L2 2932 3112 -160 818 225 0 19 chr12 82346955 82347115 -61935374 + FRAM SINE Alu 1 157 -9 2577 42 0 13 chr12 82347217 82347528 -61934961 - AluY SINE Alu -3 308 2 5370 92 23 4 chr12 82347528 82348234 -61934255 - LTR30 LTR ERV1 -3 719 1 4219 100 17 10 chr12 82348234 82348824 -61933665 - HERV30 LTR ERV1 0 8257 7664 * 28047 90 3 4 chr12 82348818 82352430 -61930059 - HERV30 LTR ERV1 -4649 3608 1 5632 79 23 3 chr12 82352430 82353138 -61929351 - LTR30 LTR ERV1 0 722 1 229 327 58 19 chr12 82353278 82353434 -61929055 + LTR67 LTR ERVL 396 557 0 796 277 165 37 chr12 82353434 82353919 -61928570 + L2 LINE L2 2751 3309 -4 527 264 32 8 chr12 82353917 82354042 -61928447 - MIR SINE MIR -115 147 20 * 199 190 35 0 chr12 82354491 82354549 -61927940 + T-rich Low_complexity Low_complexity 4 63 0 547 218 0 0 chr12 82354882 82354983 -61927506 - FRAM SINE Alu -75 101 1 289 248 77 51 chr12 82354987 82355104 -61927385 + MIR SINE MIR 117 236 -26 2151 104 0 17 chr12 82355248 82355546 -61926943 - AluSg SINE Alu -17 293 1 545 232 118 118 chr12 82355862 82356362 -61926127 + L1ME4a LINE L1 5502 6004 -117 1463 176 99 0 chr12 82356362 82356635 -61925854 + AluJo SINE Alu 1 300 -12 545 232 118 118 chr12 82356635 82356751 -61925738 + L1ME4a LINE L1 6003 6118 -3 255 335 168 11 chr12 82357110 82357289 -61925200 - L2 LINE L2 -39 3233 3027 2076 118 3 23 chr12 82357789 82358094 -61924395 - AluSx SINE Alu -13 299 1 482 216 64 83 chr12 82358185 82358389 -61924100 + LTR37A LTR ERV1 141 340 -86 529 131 0 71 chr12 82358502 82358601 -61923888 + AluS SINE Alu 220 311 -1 1930 120 4 0 chr12 82359201 82359467 -61923022 - AluSx SINE Alu -10 302 36 2399 264 27 73 chr12 82359473 82360565 -61921924 + L2 LINE L2 2153 3191 -122 568 313 73 12 chr12 82360617 82360863 -61921626 + MIR SINE MIR 2 262 0 829 301 66 23 chr12 82360986 82361288 -61921201 + LTR16A LTR ERVL 130 444 -6 22 0 0 0 chr12 82361823 82361845 -61920644 + AT_rich Low_complexity Low_complexity 1 22 0 402 264 82 44 chr12 82363312 82363471 -61919018 + MIR3 SINE MIR 19 183 -25 705 233 47 120 chr12 82363584 82363771 -61918718 - MER110 LTR ERV1 -9 482 283 1561 179 7 34 chr12 82363771 82364062 -61918427 + AluJo SINE Alu 18 300 -12 705 233 47 120 chr12 82364062 82364347 -61918142 - MER110 LTR ERV1 -208 283 80 678 313 113 3 chr12 82364524 82364834 -61917655 + L2 LINE L2 2267 2610 -704 663 315 93 29 chr12 82364860 82365270 -61917219 + L2 LINE L2 2878 3313 0 252 282 55 9 chr12 82366048 82366158 -61916331 - L2 LINE L2 -4 3309 3195 440 287 7 126 chr12 82366190 82366483 -61916006 - L2 LINE L2 -493 2821 2564 686 202 0 0 chr12 82366541 82366655 -61915834 - FLAM_A SINE Alu -6 136 23 2170 113 3 3 chr12 82366819 82367110 -61915379 - AluSx SINE Alu -17 295 5 270 291 133 31 chr12 82368557 82368753 -61913736 + MIR SINE MIR 47 262 0 1968 197 108 2 chr12 82368818 82369225 -61913264 - MLT1D LTR MaLR -2 503 54 1034 175 52 131 chr12 82369227 82369633 -61912856 - MLT2C2 LTR ERVL -8 456 83 371 229 11 104 chr12 82369541 82369724 -61912765 - MLT1D LTR MaLR -339 166 1 * 219 302 88 166 chr12 82369743 82370074 -61912415 - L2 LINE L2 -35 3237 2933 1650 199 34 84 chr12 82370140 82370557 -61911932 - MSTD LTR MaLR 0 396 1 1136 271 80 41 chr12 82370686 82371147 -61911342 + MLT1L LTR MaLR 1 479 -136 2217 123 0 0 chr12 82371501 82371810 -61910679 + AluSx SINE Alu 1 309 -3 821 197 0 0 chr12 82372954 82373091 -61909398 + FLAM_C SINE Alu 1 137 -6 199 328 151 17 chr12 82373178 82373297 -61909192 - L2 LINE L2 0 3272 3138 682 320 36 12 chr12 82373328 82373578 -61908911 - MIR SINE MIR -6 256 1 12558 146 27 7 chr12 82373778 82376434 -61906055 + L1M1 LINE L1 14 3394 -4171 1650 133 64 32 chr12 82377264 82377369 -61905120 + L1M1 LINE L1 3377 3477 -4088 327 49 0 0 chr12 82377369 82377410 -61905079 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 1650 133 64 32 chr12 82377410 82377785 -61904704 + L1M1 LINE L1 3477 3876 -3689 605 181 16 0 chr12 82377785 82377912 -61904577 + (TATATG)n Simple_repeat Simple_repeat 6 134 0 229 65 0 0 chr12 82377914 82377960 -61904529 + LTR66 LTR ERVL 394 439 -171 * 291 172 0 0 chr12 82377934 82377998 -61904491 - LTR66 LTR ERVL -171 439 376 1133 249 0 27 chr12 82377999 82378231 -61904258 + L1M1 LINE L1 3897 4121 -3444 1626 190 24 0 chr12 82378231 82378520 -61903969 - AluJo SINE Alu -16 296 1 1133 249 0 27 chr12 82378520 82378584 -61903905 + L1M1 LINE L1 4121 4185 -3380 490 249 131 73 chr12 82378697 82379162 -61903327 + L1MCa LINE L1 959 1450 -4976 288 301 153 6 chr12 82379159 82379184 -61903305 + L1MCa LINE L1 1767 1787 -4820 * 1983 120 13 20 chr12 82379184 82379513 -61902976 + AluSx SINE Alu 1 312 0 288 301 153 6 chr12 82379513 82379556 -61902933 + L1MCa LINE L1 1787 1822 -4785 1986 141 3 0 chr12 82379556 82379890 -61902599 + AluSx SINE Alu 1 335 0 288 301 153 6 chr12 82379890 82379995 -61902494 + L1MCa LINE L1 1822 1968 -4639 715 39 19 0 chr12 82380041 82380144 -61902345 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 325 297 59 0 chr12 82380836 82380937 -61901552 + MER91C DNA MER1_type 33 139 -1 200 143 24 0 chr12 82381346 82381388 -61901101 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 518 301 61 72 chr12 82381449 82381824 -61900665 + MLT1K LTR MaLR 75 445 -143 197 193 0 88 chr12 82382662 82382719 -61899770 - L2 LINE L2 0 3313 3262 1841 138 3 40 chr12 82382990 82383288 -61899201 + AluSx SINE Alu 1 287 -25 499 142 37 0 chr12 82383289 82383423 -61899066 + (TA)n Simple_repeat Simple_repeat 2 140 0 3498 120 45 15 chr12 82383549 82384098 -61898391 + LTR49 LTR ERV1 30 595 0 1589 160 23 56 chr12 82384405 82384711 -61897778 + AluSx SINE Alu 1 296 -16 243 0 0 0 chr12 82384722 82384749 -61897740 + (CA)n Simple_repeat Simple_repeat 2 28 0 1652 179 7 3 chr12 82384866 82385156 -61897333 - AluJo SINE Alu -21 291 1 24 0 0 0 chr12 82385331 82385355 -61897134 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr12 82385518 82385545 -61896944 + (CA)n Simple_repeat Simple_repeat 2 28 0 789 277 56 40 chr12 82385596 82386032 -61896457 - L1MC/D LINE L1 -2009 5799 5313 2281 86 3 3 chr12 82386094 82386384 -61896105 - AluSg SINE Alu -20 290 1 2441 93 0 0 chr12 82386385 82386696 -61895793 - AluSx SINE Alu -1 311 1 6140 99 39 14 chr12 82386954 82387331 -61895158 - L1PB1 LINE L1 -3 6864 6498 2234 89 3 45 chr12 82387331 82387644 -61894845 - AluSg SINE Alu -10 300 1 6140 99 39 14 chr12 82387644 82388453 -61894036 - L1PB1 LINE L1 -369 6498 5673 7960 204 2 2 chr12 82388470 82390069 -61892420 - L1PB1 LINE L1 -1280 5582 3984 7807 89 5 19 chr12 82390069 82391141 -61891348 + MER11C LTR ERVK 1 1057 -14 2472 230 28 5 chr12 82391180 82391788 -61890701 - L1PB1 LINE L1 -2872 3990 3369 * 11785 188 125 12 chr12 82391767 82392335 -61890154 - L1PB1 LINE L1 -3697 3165 2663 2527 72 0 0 chr12 82392335 82392641 -61889848 + AluY SINE Alu 1 306 -5 11785 188 125 12 chr12 82392641 82394906 -61887583 - L1PB1 LINE L1 -4199 2663 6 426 299 61 43 chr12 82395344 82395357 -61887132 - MLT1K LTR MaLR -17 571 560 3898 149 46 3 chr12 82395357 82395983 -61886506 - MER39B LTR ERV1 0 653 1 426 299 61 43 chr12 82395983 82396200 -61886289 - MLT1K LTR MaLR -28 560 337 259 172 16 78 chr12 82396643 82396707 -61885782 - L2 LINE L2 -16 3256 3197 4365 143 9 31 chr12 82396834 82397520 -61884969 - LTR51 LTR ERV1 0 671 1 1867 221 176 11 chr12 82397527 82398057 -61884432 - L1MC4 LINE L1 -35 8007 7391 657 332 35 35 chr12 82398328 82398702 -61883787 + LTR16C LTR ERVL 118 491 0 298 329 92 43 chr12 82398703 82398910 -61883579 + ERVL LTR ERVL 2 218 -4778 545 340 30 19 chr12 82399065 82399327 -61883162 + ERVL LTR ERVL 360 624 -4372 744 333 62 58 chr12 82399467 82400361 -61882128 + ERVL LTR ERVL 984 1919 -3774 2869 120 30 16 chr12 82400370 82400796 -61881693 + MSTB1 LTR MaLR 1 432 0 2231 121 32 42 chr12 82400818 82401197 -61881292 - THE1C LTR MaLR 0 375 1 201 186 0 0 chr12 82401206 82401223 -61881266 + A-rich Low_complexity Low_complexity 1 17 -26 1777 168 9 22 chr12 82401223 82401538 -61880951 + AluJb SINE Alu 1 311 -1 201 186 0 0 chr12 82401538 82401563 -61880926 + A-rich Low_complexity Low_complexity 16 43 0 2365 69 7 13 chr12 82401740 82402044 -61880445 + AluSg SINE Alu 1 302 -8 2253 88 14 0 chr12 82402055 82402350 -61880139 + AluSp SINE Alu 1 299 -14 432 226 57 8 chr12 82402522 82402646 -61879843 + LTR65 LTR ERV1 35 164 -505 2521 67 3 6 chr12 82403330 82403644 -61878845 + AluSq SINE Alu 1 313 0 7743 148 43 41 chr12 82404224 82404729 -61877760 - L1M4 LINE L1 -3532 2850 2347 2356 102 0 0 chr12 82404729 82405033 -61877456 - AluSg SINE Alu -6 304 1 7743 148 43 41 chr12 82405033 82405219 -61877270 - L1M4 LINE L1 -4035 2347 2163 2469 67 0 3 chr12 82405219 82405518 -61876971 + AluY SINE Alu 1 298 -13 7743 148 43 41 chr12 82405518 82406661 -61875828 - L1M4 LINE L1 -4219 2163 1011 771 128 6 98 chr12 82406706 82406817 -61875672 + MER47A DNA MER2_type 56 149 -2174 1872 167 0 3 chr12 82406817 82407117 -61875372 + AluJb SINE Alu 1 299 -13 771 128 6 98 chr12 82407117 82407169 -61875320 + MER47A DNA MER2_type 149 204 -162 441 268 64 77 chr12 82407350 82407618 -61874871 + HERVI LTR ERV1 3798 7138 -647 262 227 107 0 chr12 82407794 82407869 -61874620 + MIR SINE MIR 128 210 -52 1421 136 13 13 chr12 82407878 82408106 -61874383 + AluSg/x SINE Alu 72 299 -13 2444 244 25 2 chr12 82409045 82409562 -61872927 - MLT1F LTR MaLR -13 529 1 2280 62 0 31 chr12 82409982 82410274 -61872215 + AluSq SINE Alu 1 283 -30 281 140 0 0 chr12 82410297 82410347 -61872142 + L1 LINE L1 4276 4325 -1821 203 186 23 0 chr12 82410804 82410847 -61871642 + GA-rich Low_complexity Low_complexity 3 46 0 3358 185 30 6 chr12 82411327 82411985 -61870504 + L1 LINE L1 4303 4976 -1170 799 250 170 51 chr12 82412088 82412424 -61870065 - L2 LINE L2 -1369 1945 1570 2573 235 80 22 chr12 82412425 82413157 -61869332 + L1MD1 LINE L1 4416 5207 -939 2778 89 22 6 chr12 82413157 82413515 -61868974 + THE1B LTR MaLR 1 364 0 2573 235 80 22 chr12 82413515 82413650 -61868839 + L1MD1 LINE L1 5207 5333 -813 1877 166 97 3 chr12 82413661 82414010 -61868479 + MLT1B LTR MaLR 9 390 0 4902 156 27 36 chr12 82414010 82414158 -61868331 + L1MD1 LINE L1 5332 5480 -762 3042 142 76 35 chr12 82414158 82414269 -61868220 - MER73 LTR ERVL 0 644 539 1884 116 6 56 chr12 82414269 82414588 -61867901 + AluSx SINE Alu 1 303 -9 3042 142 76 35 chr12 82414588 82415095 -61867394 - MER73 LTR ERVL -105 539 1 4902 156 27 36 chr12 82415095 82415857 -61866632 + L1MD1 LINE L1 5480 6234 -8 881 211 39 34 chr12 82415979 82416183 -61866306 + MER3 DNA MER1_type 5 209 0 21 57 0 0 chr12 82416899 82416934 -61865555 + AT_rich Low_complexity Low_complexity 1 35 0 1922 200 76 52 chr12 82417100 82417679 -61864810 - HsTC2b DNA Tc2 -2 916 148 901 161 86 19 chr12 82417680 82417842 -61864647 + AluJo SINE Alu 1 173 -139 330 271 85 17 chr12 82417874 82417992 -61864497 - HsTC2b DNA Tc2 -752 163 38 597 181 39 16 chr12 82418018 82418145 -61864344 - MIR SINE MIR -62 200 71 2530 81 3 0 chr12 82419274 82419584 -61862905 + AluSp SINE Alu 1 311 -2 328 368 36 31 chr12 82419869 82420092 -61862397 - L2 LINE L2 -225 3047 2824 527 276 135 98 chr12 82420337 82420484 -61862005 + MLT1L LTR MaLR 6 146 -469 1409 210 133 0 chr12 82420484 82420784 -61861705 - MER58B DNA MER1_type 0 341 2 527 276 135 98 chr12 82420784 82421220 -61861269 + MLT1L LTR MaLR 146 611 -4 274 250 0 109 chr12 82421237 82421307 -61861182 + L1MC4a LINE L1 5795 5846 -1962 1679 154 120 0 chr12 82421307 82421574 -61860915 + AluSx SINE Alu 1 299 -13 274 250 0 109 chr12 82421574 82421631 -61860858 + L1MC4a LINE L1 5846 5908 -1900 185 347 0 14 chr12 82422133 82422205 -61860284 + L3 LINE CR1 594 664 -913 259 313 127 12 chr12 82422316 82422482 -61860007 + L3b LINE CR1 1309 1493 -90 309 318 61 40 chr12 82422496 82422524 -61859965 - MIR3 SINE MIR -14 194 168 2128 125 3 0 chr12 82422524 82422827 -61859662 + AluSx SINE Alu 1 304 -8 309 318 61 40 chr12 82422827 82422946 -61859543 - MIR3 SINE MIR -40 168 44 222 253 187 0 chr12 82424268 82424343 -61858146 - MIR SINE MIR -142 120 32 2033 95 73 0 chr12 82424684 82424957 -61857532 - AluSg SINE Alu -17 293 1 1760 174 0 3 chr12 82427465 82427759 -61854730 - AluJb SINE Alu -19 293 1 395 251 147 12 chr12 82428100 82428263 -61854226 + MIR SINE MIR 14 198 -64 479 275 82 43 chr12 82428370 82428495 -61853994 + MIR SINE MIR 21 140 -122 2117 142 3 0 chr12 82428495 82428806 -61853683 + AluJb SINE Alu 1 312 0 479 275 82 43 chr12 82428806 82428913 -61853576 + MIR SINE MIR 140 262 0 324 291 165 39 chr12 82429364 82429395 -61853094 + MIR SINE MIR 2 28 -234 2154 91 39 0 chr12 82429395 82429681 -61852808 + AluSp SINE Alu 1 297 -16 324 291 165 39 chr12 82429681 82429855 -61852634 + MIR SINE MIR 28 233 -29 371 316 158 20 chr12 82429999 82430151 -61852338 + MIR3 SINE MIR 30 202 -6 2216 103 0 3 chr12 82430817 82431117 -61851372 - AluSq SINE Alu -14 299 1 209 176 0 20 chr12 82431174 82431225 -61851264 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 28 71 0 0 chr12 82431383 82431439 -61851050 + AT_rich Low_complexity Low_complexity 1 56 0 830 244 124 0 chr12 82431741 82431966 -61850523 + MIR SINE MIR 8 260 -2 304 194 143 20 chr12 82432029 82432127 -61850362 + HAL1 LINE L1 2365 2474 -33 2152 86 38 0 chr12 82432413 82432705 -61849784 + AluSp SINE Alu 1 303 -10 23 33 0 0 chr12 82432903 82432933 -61849556 + AT_rich Low_complexity Low_complexity 1 30 0 295 286 87 46 chr12 82433549 82433745 -61848744 - MLT1K LTR MaLR -7 581 378 498 158 184 26 chr12 82433808 82433922 -61848567 - MIR SINE MIR -30 232 101 3055 162 39 50 chr12 82434042 82434293 -61848196 - L1MC1 LINE L1 0 6333 6081 2256 97 0 39 chr12 82434293 82434602 -61847887 - AluSc SINE Alu -12 297 1 1881 109 17 40 chr12 82434612 82434914 -61847575 - AluSq SINE Alu -17 296 2 3055 162 39 50 chr12 82434914 82435268 -61847221 - L1MC1 LINE L1 -261 6072 5724 427 313 50 22 chr12 82435269 82435451 -61847038 - MIR SINE MIR -71 191 5 535 184 10 10 chr12 82435725 82435823 -61846666 + AluJ/FLAM SINE Alu 2 99 -213 675 280 150 27 chr12 82435985 82436005 -61846484 + L1ME3A LINE L1 5471 5487 -683 2236 80 0 42 chr12 82436005 82436318 -61846171 + AluY SINE Alu 3 302 -9 675 280 150 27 chr12 82436318 82436540 -61845949 + L1ME3A LINE L1 5487 5680 -490 1989 203 34 5 chr12 82436540 82436925 -61845564 + MSTD LTR MaLR 1 396 0 675 280 150 27 chr12 82436925 82437088 -61845401 + L1ME3A LINE L1 5680 5927 -243 1460 202 141 27 chr12 82437856 82438266 -61844223 - MER31B LTR ERV1 0 543 9 2117 112 59 59 chr12 82438389 82438764 -61843725 - THE1C LTR MaLR 0 375 1 1662 215 108 26 chr12 82438818 82439279 -61843210 + MLT1D LTR MaLR 3 501 -4 8423 106 51 3 chr12 82439314 82440547 -61841942 + HSMAR2 DNA Mariner 10 1301 -1 233 234 297 0 chr12 82440547 82440611 -61841878 - Tigger5 DNA MER2_type -3 2320 2238 251 167 24 0 chr12 82440622 82440664 -61841825 - Tigger5 DNA MER2_type -2268 55 13 366 164 0 30 chr12 82440664 82440731 -61841758 - Tigger5 DNA MER2_type 0 2323 2259 195 357 107 48 chr12 82440776 82441048 -61841441 - L2 LINE L2 -181 3091 2804 1234 205 70 24 chr12 82441269 82441433 -61841056 - AluJb SINE Alu 0 312 157 1818 133 91 0 chr12 82441433 82441719 -61840770 - AluSx SINE Alu 0 312 1 1234 205 70 24 chr12 82441719 82441852 -61840637 - AluJb SINE Alu -155 157 1 291 71 0 0 chr12 82442769 82442811 -61839678 + (TC)n Simple_repeat Simple_repeat 2 43 0 950 257 146 39 chr12 82443035 82443093 -61839396 - MLT1I LTR MaLR -2 407 357 995 176 6 0 chr12 82443093 82443258 -61839231 + FAM SINE Alu 1 166 -9 950 257 146 39 chr12 82443258 82443561 -61838928 - MLT1I LTR MaLR -52 357 7 2349 81 7 3 chr12 82443852 82444159 -61838330 - AluSp SINE Alu -4 309 2 262 301 107 26 chr12 82444164 82444349 -61838140 + L1ME LINE L1 5445 5653 -468 340 288 88 32 chr12 82444419 82444544 -61837945 - L2 LINE L2 0 3272 3141 2121 164 46 0 chr12 82444913 82445329 -61837160 + L1MC3 LINE L1 7351 7785 0 2022 125 0 7 chr12 82445383 82445679 -61836810 + AluSx SINE Alu 1 294 -18 2271 126 52 0 chr12 82445889 82446277 -61836212 + L1MA5 LINE L1 5893 6300 0 1584 229 56 25 chr12 82446828 82447365 -61835124 - MER21B LTR ERV1 -162 701 98 354 250 11 22 chr12 82447404 82447496 -61834993 - MER21B LTR ERV1 -767 96 6 21 0 0 0 chr12 82447881 82447902 -61834587 + AT_rich Low_complexity Low_complexity 1 21 0 1043 222 27 73 chr12 82448020 82448349 -61834140 + MER93b LTR ERV1 49 362 -11 1993 135 3 0 chr12 82448405 82448693 -61833796 + AluSx SINE Alu 1 289 -23 2201 94 3 3 chr12 82449053 82449351 -61833138 - AluY SINE Alu -13 298 1 22 0 0 0 chr12 82449399 82449421 -61833068 + AT_rich Low_complexity Low_complexity 1 22 0 715 176 24 83 chr12 82450286 82450384 -61832105 - MER96B DNA MER1_type? -181 236 155 216 0 0 0 chr12 82450384 82450408 -61832081 + (TG)n Simple_repeat Simple_repeat 2 25 0 715 176 24 83 chr12 82450408 82450514 -61831975 - MER96B DNA MER1_type? -262 155 44 35 63 0 0 chr12 82451655 82451718 -61830771 + AT_rich Low_complexity Low_complexity 1 63 0 2135 121 3 0 chr12 82452149 82452454 -61830035 + AluY SINE Alu 1 306 -5 2144 96 0 4 chr12 82452827 82453107 -61829382 + AluSq SINE Alu 1 279 -34 333 0 0 0 chr12 82453108 82453145 -61829344 + (CA)n Simple_repeat Simple_repeat 1 37 0 708 207 0 15 chr12 82453595 82453730 -61828759 + AluJo SINE Alu 1 133 -169 2546 137 36 10 chr12 82453744 82454161 -61828328 - MSTA LTR MaLR 0 428 1 974 182 0 0 chr12 82454161 82454326 -61828163 + AluJo SINE Alu 141 305 -7 1178 111 213 0 chr12 82454973 82455198 -61827291 - MER46B DNA MER2_type 0 236 89 833 333 24 24 chr12 82455300 82455712 -61826777 + HERVI LTR ERV1 7236 7647 -138 29 0 0 0 chr12 82456402 82456431 -61826058 + AT_rich Low_complexity Low_complexity 1 29 0 597 286 27 45 chr12 82457034 82457254 -61825235 - MIR SINE MIR -10 252 37 898 196 12 0 chr12 82457539 82457712 -61824777 - AluJb SINE Alu -20 292 118 989 224 0 14 chr12 82457818 82458041 -61824448 - AluJo SINE Alu -92 220 1 660 197 0 0 chr12 82459577 82459694 -61822795 + FLAM_C SINE Alu 1 117 -26 23 0 0 0 chr12 82460239 82460262 -61822227 + AT_rich Low_complexity Low_complexity 1 23 0 600 238 148 110 chr12 82461947 82462464 -61820025 - MLT1H1 LTR MaLR -8 547 14 186 43 0 0 chr12 82462801 82462824 -61819665 + (ATG)n Simple_repeat Simple_repeat 2 24 0 239 225 112 34 chr12 82463002 82463027 -61819462 - MER46A DNA MER2_type -66 170 139 573 172 71 0 chr12 82463027 82463126 -61819363 + Tigger4(Zombi) DNA MER2_type 1 106 -2625 193 145 157 157 chr12 82463404 82463487 -61819002 + L2 LINE L2 3231 3313 0 21 0 0 0 chr12 82463826 82463847 -61818642 + AT_rich Low_complexity Low_complexity 1 21 0 315 157 0 0 chr12 82465486 82465556 -61816933 - L1PB4 LINE L1 -1 6155 6086 1622 108 89 55 chr12 82465556 82465854 -61816635 + L1P5 LINE L1 5298 5609 -547 2220 113 3 3 chr12 82465854 82466163 -61816326 + AluSg SINE Alu 1 309 -1 1622 108 89 55 chr12 82466163 82466189 -61816300 + L1P5 LINE L1 5609 5633 -523 21 36 0 0 chr12 82466512 82466540 -61815949 + AT_rich Low_complexity Low_complexity 1 28 0 864 135 8 0 chr12 82466541 82466674 -61815815 - FRAM SINE Alu -46 130 1 2131 129 0 3 chr12 82468017 82468327 -61814162 - AluSg SINE Alu -1 309 1 1837 149 10 7 chr12 82468332 82468621 -61813868 - AluJb SINE Alu -22 290 1 2935 193 38 22 chr12 82469074 82469675 -61812814 + MER82 DNA MER2_type 2 612 -41 269 262 34 87 chr12 82469956 82470105 -61812384 - MIR SINE MIR -119 143 3 596 278 105 29 chr12 82470118 82470188 -61812301 + L1ME4a LINE L1 5547 5610 -511 2493 59 0 3 chr12 82470188 82470494 -61811995 + AluY SINE Alu 1 305 -6 596 278 105 29 chr12 82470494 82470765 -61811724 + L1ME4a LINE L1 5610 5914 -207 281 277 50 25 chr12 82470773 82470932 -61811557 + L1ME4a LINE L1 5956 6118 -3 279 283 78 52 chr12 82471535 82471726 -61810763 - L1M4 LINE L1 -1335 4811 4616 1233 150 30 0 chr12 82471736 82471936 -61810553 - AluSg/x SINE Alu -16 294 89 258 207 0 0 chr12 82472191 82472249 -61810240 - L1M4 LINE L1 -2915 3231 3174 327 296 148 20 chr12 82472423 82472626 -61809863 - L1M4 LINE L1 -3527 2619 2391 1101 180 11 0 chr12 82472860 82473049 -61809440 - AluSg/x SINE Alu -15 297 107 * 1168 149 0 0 chr12 82473048 82473216 -61809273 + AluJo SINE Alu 115 282 -30 316 299 41 66 chr12 82473431 82473530 -61808959 - HAL1b LINE L1 -1152 196 102 662 202 0 8 chr12 82473530 82473672 -61808817 - FLAM_A SINE Alu 0 142 2 316 299 41 66 chr12 82473672 82473768 -61808721 - HAL1b LINE L1 -1246 102 5 22 0 0 0 chr12 82473881 82473903 -61808586 + AT_rich Low_complexity Low_complexity 1 22 0 1306 223 29 47 chr12 82474581 82474962 -61807527 - MLT1A2 LTR MaLR 0 374 1 487 295 95 29 chr12 82475508 82475718 -61806771 - MIR SINE MIR -10 252 29 926 271 91 55 chr12 82475864 82476488 -61806001 + HAL1 LINE L1 1845 2491 -16 26 0 0 0 chr12 82477215 82477241 -61805248 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 82477413 82477434 -61805055 + AT_rich Low_complexity Low_complexity 1 21 0 181 345 35 0 chr12 82478780 82478838 -61803651 + L2 LINE L2 3254 3313 0 1058 310 127 30 chr12 82480128 82481007 -61801482 - L2 LINE L2 0 3313 2328 2362 80 13 0 chr12 82481483 82481782 -61800707 + AluSp SINE Alu 1 303 -10 29 0 0 0 chr12 82483165 82483194 -61799295 + AT_rich Low_complexity Low_complexity 1 29 0 2039 108 0 32 chr12 82484319 82484633 -61797856 - AluSq SINE Alu -9 304 1 22 0 0 0 chr12 82484727 82484749 -61797740 + AT_rich Low_complexity Low_complexity 1 22 0 209 237 66 53 chr12 82485291 82485367 -61797122 + L3 LINE CR1 1024 1100 -477 26 0 0 0 chr12 82486083 82486109 -61796380 + AT_rich Low_complexity Low_complexity 1 26 0 1086 128 12 0 chr12 82486464 82486628 -61795861 + AluJb SINE Alu 134 299 -13 1089 134 45 104 chr12 82486814 82487082 -61795407 + L1MD1 LINE L1 5991 6242 0 339 323 161 9 chr12 82487378 82487595 -61794894 + L3 LINE CR1 821 1070 -507 567 200 113 31 chr12 82487595 82487755 -61794734 - AluJb SINE Alu -7 305 133 325 146 18 0 chr12 82537758 82537813 -61744676 - AluJ/FLAM SINE Alu -233 69 14 1520 199 48 45 chr12 82537819 82538175 -61744314 - MSTD LTR MaLR -39 357 1 6805 199 46 44 chr12 82538197 82538417 -61744072 - MER45R DNA AcHobo 0 1581 1363 2543 63 0 0 chr12 82538417 82538719 -61743770 - AluY SINE Alu -9 302 1 6805 199 46 44 chr12 82538719 82540076 -61742413 - MER45R DNA AcHobo -218 1363 1 2392 184 21 9 chr12 82540275 82540694 -61741795 - MSTB LTR MaLR -2 424 1 297 331 41 0 chr12 82540756 82540877 -61741612 + LTR16C LTR ERVL 355 480 -11 552 251 183 26 chr12 82541002 82541398 -61741091 - L2 LINE L2 0 3313 2787 327 311 67 8 chr12 82542596 82542715 -61739774 + L2 LINE L2 3146 3271 -1 527 337 99 40 chr12 82543154 82543548 -61738941 + MLT1K LTR MaLR 118 488 -100 181 0 0 0 chr12 82543548 82543568 -61738921 + (TTTTA)n Simple_repeat Simple_repeat 2 175 0 2098 86 14 0 chr12 82543568 82543847 -61738642 - AluY SINE Alu -28 283 1 527 337 99 40 chr12 82543847 82543896 -61738593 + MLT1K LTR MaLR 487 588 0 210 71 0 0 chr12 82543960 82543988 -61738501 + (T)n Simple_repeat Simple_repeat 1 28 0 522 289 44 40 chr12 82544057 82544534 -61737955 - L1MEc LINE L1 -2946 3269 2791 344 348 30 12 chr12 82544780 82544944 -61737545 - L1MEc LINE L1 -3874 2522 2356 518 220 29 30 chr12 82545030 82545272 -61737217 + L1MEc LINE L1 2095 2296 -3919 349 327 141 47 chr12 82545885 82545977 -61736512 - L2 LINE L2 -213 3059 2977 1187 182 27 45 chr12 82545977 82546307 -61736182 - MER33 DNA MER1_type 0 324 1 349 327 141 47 chr12 82546307 82546389 -61736100 - L2 LINE L2 -295 2977 2904 309 26 0 0 chr12 82546389 82546427 -61736062 + (TG)n Simple_repeat Simple_repeat 2 39 0 349 327 141 47 chr12 82546427 82546937 -61735552 - L2 LINE L2 -368 2904 2295 260 308 103 0 chr12 82547332 82547439 -61735050 - LTR33 LTR ERVL -305 216 99 236 234 19 113 chr12 82547911 82548028 -61734461 + L1MC/D LINE L1 5308 5434 -2374 254 29 29 0 chr12 82548028 82548063 -61734426 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1426 135 164 4 chr12 82548065 82548309 -61734180 - AluSx SINE Alu -29 283 1 236 234 19 113 chr12 82548309 82548366 -61734123 + L1MC/D LINE L1 5435 5466 -2342 368 302 132 0 chr12 82548763 82548945 -61733544 - L1ME LINE L1 -376 5745 5540 24 0 0 0 chr12 82549080 82549104 -61733385 + AT_rich Low_complexity Low_complexity 1 24 0 1504 42 0 11 chr12 82550030 82550220 -61732269 - AluYb8 SINE Alu -1 317 130 213 94 0 0 chr12 82550383 82550415 -61732074 + (GA)n Simple_repeat Simple_repeat 1 32 0 331 340 114 33 chr12 82550656 82551223 -61731266 - L2 LINE L2 -187 3085 2477 384 223 363 14 chr12 82551718 82551933 -61730556 + LTR50 LTR ERVL 1 290 -505 697 262 147 0 chr12 82551939 82552218 -61730271 + LTR50 LTR ERVL 476 795 0 505 240 43 106 chr12 82552504 82552712 -61729777 - MER102b DNA MER1_type -29 312 118 482 333 72 0 chr12 82552957 82553095 -61729394 + L2 LINE L2 3123 3270 -2 7199 43 7 2 chr12 82553126 82554017 -61728472 + L1PA6 LINE L1 5257 6151 -3 371 278 83 8 chr12 82554018 82554151 -61728338 + MIR SINE MIR 6 146 -62 2202 88 23 7 chr12 82554153 82554459 -61728030 + AluY SINE Alu 1 311 0 937 184 60 9 chr12 82554830 82555048 -61727441 + L1MA9 LINE L1 6044 6272 -40 239 316 189 6 chr12 82555208 82555366 -61727123 + MIR3 SINE MIR 4 184 -57 1937 147 10 23 chr12 82556804 82557111 -61725378 - AluSx SINE Alu -9 303 1 312 283 147 21 chr12 82557353 82557544 -61724945 + L2 LINE L2 3098 3312 -1 251 300 0 0 chr12 82557544 82557604 -61724885 + GA-rich Low_complexity Low_complexity 1 60 0 2017 232 52 9 chr12 82557750 82558487 -61724002 - MER21B LTR ERV1 -51 812 9 258 252 184 20 chr12 82559221 82559368 -61723121 + MIR3 SINE MIR 28 198 -10 681 219 0 8 chr12 82560371 82560499 -61721990 + FLAM_A SINE Alu 1 127 -6 271 290 148 7 chr12 82560603 82560758 -61721731 + Charlie8 DNA MER1_type 6 182 -2235 333 0 0 0 chr12 82561188 82561225 -61721264 + (TA)n Simple_repeat Simple_repeat 2 38 0 554 294 13 20 chr12 82561496 82561649 -61720840 - MER5B DNA MER1_type -26 152 1 339 274 44 9 chr12 82561870 82561983 -61720506 + MIR SINE MIR 90 206 -56 819 184 23 17 chr12 82562115 82562289 -61720200 - AluSg/x SINE Alu -1 309 135 341 65 0 0 chr12 82562457 82562503 -61719986 - MADE1 DNA Mariner 0 80 35 1090 198 36 12 chr12 82562648 82562901 -61719588 - MLT1D LTR MaLR 0 505 247 1055 146 34 22 chr12 82563013 82563191 -61719298 - AluJb SINE Alu -25 287 108 622 146 0 10 chr12 82563243 82563346 -61719143 - AluJb SINE Alu -210 102 1 904 251 175 60 chr12 82563391 82563888 -61718601 + MER41C LTR ERV1 1 554 0 255 83 0 0 chr12 82564074 82564110 -61718379 - MLT1D LTR MaLR -451 54 19 252 200 40 10 chr12 82564770 82564870 -61717619 - L1ME4a LINE L1 -12 6109 6007 367 200 113 0 chr12 82564906 82564986 -61717503 - L2 LINE L2 0 3313 3225 2598 110 62 26 chr12 82565360 82565738 -61716751 - MER57B LTR ERV1 0 434 38 2381 94 3 0 chr12 82565738 82566047 -61716442 + AluSq SINE Alu 1 310 -3 2598 110 62 26 chr12 82566047 82566087 -61716402 - MER57B LTR ERV1 -396 38 1 1000 285 146 15 chr12 82566088 82566610 -61715879 - MLT1G1 LTR MaLR -5 590 1 2295 84 3 0 chr12 82566979 82567277 -61715212 + AluY SINE Alu 2 300 -11 2342 90 72 17 chr12 82567548 82567893 -61714596 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr12 82567999 82568022 -61714467 + AT_rich Low_complexity Low_complexity 1 23 0 3257 131 43 75 chr12 82568061 82568526 -61713963 - MER41B LTR ERV1 0 635 157 2026 147 0 0 chr12 82568526 82568840 -61713649 - AluSq SINE Alu 0 314 1 3257 131 43 75 chr12 82568840 82568993 -61713496 - MER41B LTR ERV1 -478 157 36 2279 39 70 3 chr12 82568993 82569277 -61713212 + AluY SINE Alu 1 303 -8 3257 131 43 75 chr12 82569277 82569312 -61713177 - MER41B LTR ERV1 -599 36 1 205 195 0 0 chr12 82570697 82570738 -61711751 + T-rich Low_complexity Low_complexity 1 41 0 207 0 0 0 chr12 82570873 82570896 -61711593 + (CAA)n Simple_repeat Simple_repeat 2 24 0 715 306 50 4 chr12 82571217 82571475 -61711014 - MLT1K LTR MaLR -317 271 2 212 0 36 0 chr12 82572131 82572159 -61710330 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2383 79 3 7 chr12 82572304 82572607 -61709882 - AluSq SINE Alu -11 302 1 1495 168 38 50 chr12 82573257 82573657 -61708832 - L1MEc LINE L1 -4147 2249 1855 1948 164 3 0 chr12 82573657 82573949 -61708540 + AluJo SINE Alu 2 294 -18 31 26 0 0 chr12 82573977 82574015 -61708474 + AT_rich Low_complexity Low_complexity 1 38 0 1105 138 88 50 chr12 82574041 82574324 -61708165 - L1M1 LINE L1 -4990 2575 2282 658 250 4 62 chr12 82574441 82574527 -61707962 + L1MEc LINE L1 1528 1617 -4779 2176 112 0 3 chr12 82574527 82574822 -61707667 + AluSg SINE Alu 1 294 -16 658 250 4 62 chr12 82574822 82575007 -61707482 + L1MEc LINE L1 1617 1783 -4613 * 3746 231 26 41 chr12 82574999 82575190 -61707299 + L1M1 LINE L1 12 204 -7361 2086 125 36 13 chr12 82575190 82575495 -61706994 + AluSx SINE Alu 1 312 0 3746 231 26 41 chr12 82575495 82576798 -61705691 + L1M1 LINE L1 204 2162 -5403 25 0 0 0 chr12 82576924 82576949 -61705540 + GC_rich Low_complexity Low_complexity 1 25 0 32 0 0 0 chr12 82576949 82576981 -61705508 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr12 82577078 82577109 -61705380 + GC_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr12 82577175 82577198 -61705291 + AT_rich Low_complexity Low_complexity 1 23 0 203 305 0 0 chr12 82578087 82578146 -61704343 + CT-rich Low_complexity Low_complexity 2 60 0 1488 110 30 13 chr12 82578428 82578664 -61703825 - L1PA10 LINE L1 -4 6164 5925 297 316 60 8 chr12 82578970 82579087 -61703402 - L2 LINE L2 -11 3261 3139 216 0 0 0 chr12 82579185 82579209 -61703280 + (A)n Simple_repeat Simple_repeat 1 24 0 209 81 0 27 chr12 82579244 82579281 -61703208 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 1007 166 0 12 chr12 82579324 82579487 -61703002 + AluJb SINE Alu 133 293 -19 2501 107 42 8 chr12 82579551 82579936 -61702553 + MER48 LTR ERV1 1 398 0 1423 211 39 49 chr12 82580208 82580433 -61702056 + L1ME1 LINE L1 4632 4858 -1288 2393 69 96 0 chr12 82580433 82580765 -61701724 - L1PA10 LINE L1 -11 6157 5794 1423 211 39 49 chr12 82580765 82581026 -61701463 + L1ME1 LINE L1 4858 5113 -1033 1447 189 58 84 chr12 82581031 82581448 -61701041 + MLT2D LTR ERVL 1 406 -8 611 211 134 45 chr12 82581460 82581593 -61700896 + L1ME1 LINE L1 5123 5243 -903 1789 148 16 35 chr12 82581593 82581903 -61700586 + AluJb SINE Alu 1 304 -8 611 211 134 45 chr12 82581903 82582015 -61700474 + L1ME1 LINE L1 5243 5390 -756 442 227 25 61 chr12 82582015 82582178 -61700311 - MER67A LTR ERV1 -109 434 278 * 1306 233 75 33 chr12 82582150 82582410 -61700079 - MER67B LTR ERV1 -243 418 226 311 181 0 24 chr12 82582410 82582493 -61699996 + L1MA6 LINE L1 6220 6300 0 1306 233 75 33 chr12 82582493 82582729 -61699760 - MER67B LTR ERV1 -435 226 1 447 227 0 0 chr12 82582729 82582809 -61699680 - MER67A LTR ERV1 -463 80 1 1169 249 119 8 chr12 82582810 82583416 -61699073 + L1ME1 LINE L1 5402 6161 -5 597 212 114 43 chr12 82583544 82583728 -61698761 - MER58C DNA MER1_type 0 215 19 181 245 132 0 chr12 82583871 82583924 -61698565 - MIR SINE MIR -80 128 69 427 192 25 25 chr12 82584374 82584494 -61697995 + L1MA10 LINE L1 6214 6333 -1 37 81 0 0 chr12 82584601 82584687 -61697802 + AT_rich Low_complexity Low_complexity 1 86 0 240 100 0 0 chr12 82586390 82586430 -61696059 + (CA)n Simple_repeat Simple_repeat 1 40 0 25 0 0 0 chr12 82587089 82587114 -61695375 + AT_rich Low_complexity Low_complexity 1 25 0 2488 216 66 73 chr12 82587202 82588001 -61694488 - MER21B LTR ERV1 -58 805 12 333 202 17 0 chr12 82588001 82588124 -61694365 + CT-rich Low_complexity Low_complexity 1 125 0 1646 201 30 3 chr12 82588124 82588428 -61694061 - AluJb SINE Alu 0 312 1 28 0 0 26 chr12 82588542 82588567 -61693922 + AT_rich Low_complexity Low_complexity 1 26 -12 2522 48 3 13 chr12 82588567 82588881 -61693608 - AluY SINE Alu 0 311 1 28 0 0 26 chr12 82588881 82588894 -61693595 + AT_rich Low_complexity Low_complexity 26 38 0 363 92 62 0 chr12 82589025 82589090 -61693399 - MADE1 DNA Mariner -9 71 3 386 261 185 83 chr12 82589122 82589543 -61692946 + L2 LINE L2 2815 3278 -35 881 293 84 6 chr12 82589746 82590101 -61692388 - MLT1J2 LTR MaLR -47 403 21 250 252 67 84 chr12 82590812 82590931 -61691558 + MIR SINE MIR 139 255 -7 377 287 65 0 chr12 82591145 82591253 -61691236 - MER91C DNA MER1_type 0 140 26 2318 100 3 0 chr12 82593286 82593595 -61688894 - AluSq SINE Alu -3 310 1 211 302 0 16 chr12 82593947 82594010 -61688479 + MIR SINE MIR 52 113 -149 325 165 0 47 chr12 82594010 82594095 -61688394 + CT-rich Low_complexity Low_complexity 3 83 0 * 496 186 0 0 chr12 82594089 82594186 -61688303 + T-rich Low_complexity Low_complexity 3 180 0 1821 158 65 0 chr12 82594186 82594478 -61688011 - AluSx SINE Alu 0 408 1 433 213 116 65 chr12 82594550 82594705 -61687784 - MIR SINE MIR 0 262 100 962 288 133 29 chr12 82594708 82595363 -61687126 + L2 LINE L2 2587 3313 0 308 263 137 0 chr12 82595356 82595451 -61687038 - MIR SINE MIR -153 109 2 * 1736 197 3 0 chr12 82595634 82595934 -61686555 - AluJo SINE Alu -10 302 2 180 0 0 0 chr12 82596784 82596804 -61685685 + (A)n Simple_repeat Simple_repeat 1 20 0 345 24 0 0 chr12 82597165 82597207 -61685282 + (TG)n Simple_repeat Simple_repeat 1 42 0 427 226 201 12 chr12 82597335 82597499 -61684990 - MIR SINE MIR -1 261 67 363 301 56 0 chr12 82597763 82597906 -61684583 + MIR SINE MIR 49 199 -63 2804 19 0 0 chr12 82597906 82598220 -61684269 + AluYb8 SINE Alu 1 314 -4 2111 127 10 0 chr12 82598768 82599076 -61683413 - AluSx SINE Alu -1 311 1 253 284 22 52 chr12 82599115 82599249 -61683240 - MLT1J LTR MaLR -4 507 378 233 324 0 0 chr12 82599329 82599397 -61683092 - MLT1J LTR MaLR -333 178 111 245 314 76 19 chr12 82599467 82599572 -61682917 + L2 LINE L2 3203 3313 0 987 261 60 43 chr12 82601511 82602043 -61680446 + L1MC5 LINE L1 7179 7719 -242 2003 133 3 25 chr12 82602451 82602767 -61679722 - AluSx SINE Alu -3 309 1 2215 107 0 10 chr12 82603939 82604229 -61678260 - AluSx SINE Alu -25 287 1 1792 170 7 0 chr12 82604232 82604521 -61677968 - AluSx SINE Alu -19 293 3 265 318 101 0 chr12 82604555 82604703 -61677786 + L1MC5 LINE L1 7695 7857 -104 22 0 0 0 chr12 82604731 82604753 -61677736 + AT_rich Low_complexity Low_complexity 1 22 0 1914 80 36 29 chr12 82604753 82605028 -61677461 - AluY SINE Alu -31 280 4 375 41 0 0 chr12 82605109 82605158 -61677331 + (CA)n Simple_repeat Simple_repeat 2 50 0 235 294 160 25 chr12 82606707 82606826 -61675663 + L2 LINE L2 3175 3309 -4 225 228 20 50 chr12 82607728 82607829 -61674660 + LTR67 LTR ERVL 460 557 0 218 412 25 8 chr12 82607858 82607977 -61674512 + MIR SINE MIR 19 139 -69 573 240 66 22 chr12 82608950 82609133 -61673356 + L2 LINE L2 2713 2903 -411 572 297 109 18 chr12 82609454 82609683 -61672806 - MIR SINE MIR 0 262 13 210 292 46 0 chr12 82611252 82611317 -61671172 + L2 LINE L2 3205 3272 0 14904 188 25 9 chr12 82611561 82616919 -61665570 - L1PB1 LINE L1 -32 6835 1392 275 272 22 22 chr12 82617583 82617675 -61664814 - L3 LINE CR1 -148 1429 1338 383 355 33 62 chr12 82617716 82617989 -61664500 + L3 LINE CR1 1307 1571 -6 453 313 20 7 chr12 82617999 82618146 -61664343 + L2 LINE L2 2255 2403 -911 991 256 46 55 chr12 82618224 82618591 -61663898 + L2 LINE L2 2941 3304 -9 2283 119 3 0 chr12 82619406 82619717 -61662772 - AluSx SINE Alu 0 312 1 600 320 52 9 chr12 82620001 82620352 -61662137 + L1ME4a LINE L1 5563 5939 -182 23 0 0 0 chr12 82620463 82620486 -61662003 + AT_rich Low_complexity Low_complexity 1 23 0 35 71 0 0 chr12 82620622 82620692 -61661797 + AT_rich Low_complexity Low_complexity 1 70 0 13399 205 46 35 chr12 82620712 82623505 -61658984 - L1MA9 LINE L1 0 7731 4970 2282 100 3 0 chr12 82623505 82623805 -61658684 - AluSp SINE Alu -12 301 1 13399 205 46 35 chr12 82623805 82625458 -61657031 - L1MA9 LINE L1 -2761 4970 3290 1992 143 10 0 chr12 82625458 82625751 -61656738 - AluSx SINE Alu -16 296 1 13399 205 46 35 chr12 82625751 82626764 -61655725 - L1MA9 LINE L1 -4441 3290 2290 204 238 0 0 chr12 82627010 82627052 -61655437 + A-rich Low_complexity Low_complexity 4 45 0 188 283 87 11 chr12 82627298 82627390 -61655099 + MIR3 SINE MIR 88 186 -22 2115 124 0 3 chr12 82627875 82628166 -61654323 - AluSq SINE Alu -21 292 3 189 0 0 0 chr12 82628173 82628194 -61654295 + (T)n Simple_repeat Simple_repeat 1 21 0 1456 264 229 20 chr12 82628222 82628953 -61653536 - L1MA9 LINE L1 -6147 1342 460 441 277 77 116 chr12 82629076 82629366 -61653123 + LTR16A1 LTR ERVL 88 342 -115 2364 97 7 0 chr12 82629366 82629676 -61652813 - AluSq SINE Alu -1 312 1 441 277 77 116 chr12 82629676 82629780 -61652709 + LTR16A1 LTR ERVL 342 449 -8 349 250 0 0 chr12 82631171 82631247 -61651242 + MIR SINE MIR 183 258 -4 823 205 135 58 chr12 82631252 82631496 -61650993 - MER46C DNA MER2_type -1 337 62 2061 128 0 0 chr12 82631496 82631798 -61650691 + AluSx SINE Alu 1 302 0 823 205 135 58 chr12 82631798 82631864 -61650625 - MER46C DNA MER2_type -276 62 2 3183 268 103 33 chr12 82632407 82634034 -61648455 - L1MEc LINE L1 -4583 1813 72 403 270 129 0 chr12 82634038 82634201 -61648288 + MIR SINE MIR 65 248 -14 180 0 0 0 chr12 82634313 82634333 -61648156 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 258 247 25 12 chr12 82634601 82634682 -61647807 - MLT1L LTR MaLR -10 605 524 309 206 78 99 chr12 82634873 82635014 -61647475 - MLT1L LTR MaLR -336 279 142 517 188 0 0 chr12 82635136 82635221 -61647268 - Tigger5 DNA MER2_type 0 2323 2239 1776 149 13 23 chr12 82635859 82636160 -61646329 - AluJb SINE Alu -14 298 1 230 91 0 0 chr12 82636260 82636293 -61646196 - L1MB1 LINE L1 -2198 3948 3916 6446 162 23 48 chr12 82636300 82638579 -61643910 + L1MB1 LINE L1 3943 6168 0 826 279 18 31 chr12 82639194 82639423 -61643066 - MIR SINE MIR -25 237 12 208 284 241 25 chr12 82639507 82639635 -61642854 + MIR SINE MIR 9 151 -67 1617 130 25 29 chr12 82639635 82639909 -61642580 - Tigger5 DNA MER2_type 0 2323 2051 1444 187 11 42 chr12 82639909 82640263 -61642226 + MSTD LTR MaLR 1 396 0 542 155 0 52 chr12 82640272 82640369 -61642120 - Tigger5 DNA MER2_type -2231 92 1 389 280 17 25 chr12 82640409 82640527 -61641962 - MER5A DNA MER1_type -72 117 1 2144 110 7 13 chr12 82640886 82641195 -61641294 + AluSg SINE Alu 1 307 -3 284 299 364 0 chr12 82641974 82642128 -61640361 + MIR SINE MIR 23 232 -30 572 314 58 4 chr12 82642371 82642613 -61639876 + MLT1L LTR MaLR 352 606 -9 258 175 0 0 chr12 82643451 82643491 -61638998 + MLT1J LTR MaLR 95 134 -377 255 292 45 11 chr12 82643458 82643547 -61638942 + LTR67 LTR ERVL 106 197 -360 * 298 270 97 26 chr12 82643811 82643928 -61638561 - MIR SINE MIR -68 140 24 290 227 45 34 chr12 82643949 82644037 -61638452 - L2 LINE L2 -64 3249 3161 4367 104 28 18 chr12 82644047 82644720 -61637769 + LTR17 LTR ERV1 1 780 0 459 0 0 0 chr12 82644767 82644818 -61637671 + (TG)n Simple_repeat Simple_repeat 1 51 0 386 314 8 0 chr12 82644822 82644940 -61637549 - L2 LINE L2 -250 3063 2945 26 50 0 0 chr12 82645097 82645137 -61637352 + AT_rich Low_complexity Low_complexity 1 40 0 1666 216 24 35 chr12 82645241 82645663 -61636826 - MLT1C LTR MaLR 0 467 51 1101 194 114 0 chr12 82645895 82646096 -61636393 - MER58A DNA MER1_type 0 224 1 237 83 0 0 chr12 82647157 82647193 -61635296 + (TC)n Simple_repeat Simple_repeat 1 36 0 1909 167 0 0 chr12 82647193 82647480 -61635009 - AluJb SINE Alu -25 287 1 463 333 48 5 chr12 82648063 82648273 -61634216 - MIR SINE MIR -42 220 2 247 274 0 14 chr12 82648389 82648462 -61634027 - MLT1J2 LTR MaLR 0 450 379 249 167 340 38 chr12 82648568 82648681 -61633808 - MIR SINE MIR -62 146 13 24 32 0 0 chr12 82649018 82649049 -61633440 + AT_rich Low_complexity Low_complexity 1 31 0 1860 126 3 34 chr12 82649510 82649804 -61632685 + AluJb SINE Alu 1 285 -27 489 174 0 0 chr12 82650101 82650187 -61632302 - MLT1H LTR MaLR 0 549 464 282 89 0 0 chr12 82650261 82650306 -61632183 - AluSq SINE Alu -4 299 255 1310 83 12 0 chr12 82650306 82650474 -61632015 - AluSq SINE Alu -143 170 1 1215 271 15 24 chr12 82650541 82650881 -61631608 - MLT1H LTR MaLR -210 339 3 256 318 122 14 chr12 82650949 82651097 -61631392 + MIR SINE MIR 1 150 -58 291 338 34 27 chr12 82651607 82651755 -61630734 + MIR3 SINE MIR 58 206 -2 930 273 77 40 chr12 82652151 82652579 -61629910 + MLT1J1 LTR MaLR 3 446 0 383 217 115 25 chr12 82652584 82652725 -61629764 - MIR SINE MIR -61 147 35 190 262 0 0 chr12 82652904 82652946 -61629543 + MIR SINE MIR 93 134 -74 2564 55 0 3 chr12 82652980 82653288 -61629201 + AluY SINE Alu 1 307 -4 297 235 15 0 chr12 82653421 82653489 -61629000 + MIR SINE MIR 178 246 -16 1883 202 94 66 chr12 82654177 82654994 -61627495 - Charlie2 DNA MER1_type -17 2845 2006 1831 93 4 0 chr12 82655009 82655246 -61627243 - AluSx SINE Alu -16 296 59 826 104 87 0 chr12 82655247 82655362 -61627127 - AluSq/x SINE Alu -188 125 1 570 216 32 8 chr12 82655387 82655512 -61626977 - Charlie2 DNA MER1_type -878 1984 1857 640 276 42 59 chr12 82655519 82655805 -61626684 - Charlie2 DNA MER1_type -2464 318 38 21 0 0 0 chr12 82656098 82656119 -61626370 + AT_rich Low_complexity Low_complexity 1 21 0 685 291 153 10 chr12 82656121 82656416 -61626073 - MLT1I LTR MaLR -5 404 68 466 123 0 0 chr12 82656545 82656610 -61625879 - MER8 DNA MER2_type 0 239 175 * 2899 142 11 5 chr12 82656603 82657046 -61625443 + Tigger2 DNA MER2_type 2273 2718 0 495 309 42 10 chr12 82657164 82657411 -61625078 - L1ME2 LINE L1 -278 5886 5627 297 304 17 26 chr12 82658289 82658404 -61624085 + MLT1L LTR MaLR 497 610 -5 189 0 0 0 chr12 82658518 82658539 -61623950 + (TA)n Simple_repeat Simple_repeat 2 22 0 1072 203 233 51 chr12 82658539 82658709 -61623780 + Tigger6 DNA MER2_type 3 141 -942 2729 36 0 0 chr12 82658709 82659018 -61623471 - AluY SINE Alu -2 309 1 1072 203 233 51 chr12 82659018 82659182 -61623307 + Tigger6 DNA MER2_type 141 398 -685 * 2381 183 66 0 chr12 82659164 82659650 -61622839 + Tigger6b DNA MER2_type 987 1504 -93 411 247 0 0 chr12 82659744 82659821 -61622668 + Tigger6b DNA MER2_type 1521 1597 0 423 312 35 40 chr12 82659961 82660160 -61622329 + MIR3 SINE MIR 2 199 -9 201 375 146 10 chr12 82660419 82660515 -61621974 - L2 LINE L2 -25 3247 3139 356 195 0 49 chr12 82660743 82660825 -61621664 - LTR33A LTR ERVL -9 514 437 243 315 109 0 chr12 82661078 82661170 -61621319 - MLT2E LTR ERVL -495 133 32 1993 117 38 14 chr12 82661349 82661468 -61621021 + AluSg SINE Alu 1 116 -194 2161 57 0 0 chr12 82661468 82661730 -61620759 + AluY SINE Alu 50 311 0 1993 117 38 14 chr12 82661730 82661901 -61620588 + AluSg SINE Alu 116 298 -12 1355 164 56 49 chr12 82663249 82663535 -61618954 - THE1B LTR MaLR 0 364 77 197 326 148 15 chr12 82663941 82664076 -61618413 + MER5A DNA MER1_type 16 168 -21 22 0 0 0 chr12 82665533 82665555 -61616934 + AT_rich Low_complexity Low_complexity 1 22 0 297 150 50 0 chr12 82665589 82665669 -61616820 + GA-rich Low_complexity Low_complexity 3 86 0 484 252 46 20 chr12 82667419 82667570 -61614919 + MIR SINE MIR 80 234 -28 320 171 0 85 chr12 82667649 82667731 -61614758 + L2 LINE L2 3205 3279 -34 257 286 36 0 chr12 82667965 82668077 -61614412 + (TA)n Simple_repeat Simple_repeat 1 116 0 1302 214 118 58 chr12 82669236 82669282 -61613207 + Charlie4a DNA MER1_type 49 91 -1870 1774 170 10 7 chr12 82669282 82669582 -61612907 - AluJo SINE Alu -11 301 1 1302 214 118 58 chr12 82669582 82669969 -61612520 + Charlie4a DNA MER1_type 91 508 0 257 315 108 9 chr12 82669971 82670082 -61612407 + L2 LINE L2 3191 3312 -1 638 211 148 59 chr12 82670260 82670497 -61611992 - MIR SINE MIR 0 262 5 2143 90 4 0 chr12 82671179 82671447 -61611042 - AluSx SINE Alu -18 294 26 2325 67 3 23 chr12 82671454 82671753 -61610736 - AluY SINE Alu -18 293 1 382 184 11 23 chr12 82672503 82672590 -61609899 + L1ME4a LINE L1 5966 6051 -70 346 306 63 68 chr12 82673590 82673842 -61608647 - MIR SINE MIR -2 260 10 716 113 94 0 chr12 82674109 82674215 -61608274 + FRAM SINE Alu 53 168 -8 2204 113 3 0 chr12 82674339 82674639 -61607850 + AluSx SINE Alu 1 301 -11 195 42 0 0 chr12 82674643 82674667 -61607822 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 841 226 25 30 chr12 82675497 82675696 -61606793 + MIR SINE MIR 37 234 -28 1367 188 8 0 chr12 82676282 82676516 -61605973 + AluJb SINE Alu 73 308 -4 4015 265 78 11 chr12 82677954 82679356 -61603133 + L1ME3A LINE L1 60 1554 -4842 888 169 0 66 chr12 82679376 82679559 -61602930 + FRAM SINE Alu 1 171 -5 644 211 0 23 chr12 82679591 82679724 -61602765 - FLAM_A SINE Alu -3 130 1 2517 39 0 26 chr12 82679743 82680048 -61602441 - AluY SINE Alu -14 297 1 1069 232 66 0 chr12 82680048 82680307 -61602182 + L1ME3A LINE L1 1591 1866 -4530 899 153 0 0 chr12 82680308 82680439 -61602050 + AluJb SINE Alu 1 131 -181 3345 210 61 34 chr12 82680459 82681905 -61600584 + L1ME3A LINE L1 1891 3670 -2545 687 200 14 0 chr12 82681882 82682022 -61600467 + L1ME3A LINE L1 3603 3744 -2471 * 2934 204 136 35 chr12 82681995 82682992 -61599497 + L1ME2 LINE L1 4842 6162 -241 3277 194 74 3 chr12 82682992 82683599 -61598890 + MER82 DNA MER2_type 2 651 -2 2934 204 136 35 chr12 82683599 82683869 -61598620 + L1ME2 LINE L1 6162 6403 0 2341 92 3 0 chr12 82684195 82684490 -61597999 - AluSq SINE Alu -17 296 1 300 273 160 7 chr12 82684982 82685132 -61597357 - L2 LINE L2 -185 3087 2915 202 299 62 41 chr12 82685145 82685242 -61597247 + L2 LINE L2 3197 3295 -18 226 151 57 94 chr12 82685699 82685752 -61596737 - Zaphod DNA AcHobo -490 3541 3491 559 227 20 20 chr12 82690179 82690329 -61592160 + MIR SINE MIR 11 160 -102 250 345 58 36 chr12 82692423 82692632 -61589857 - MIR SINE MIR -16 246 23 25 51 0 0 chr12 82693312 82693351 -61589138 + AT_rich Low_complexity Low_complexity 1 39 0 282 259 273 7 chr12 82694024 82694163 -61588326 + MER5A DNA MER1_type 14 189 0 2237 270 113 25 chr12 82694356 82694462 -61588027 + L1ME3A LINE L1 3937 4032 -2207 1527 50 11 0 chr12 82694462 82694641 -61587848 + L1PA5 LINE L1 5966 6146 -8 2237 270 113 25 chr12 82694641 82696162 -61586327 + L1ME3A LINE L1 4032 5724 -515 1148 187 35 19 chr12 82696162 82696580 -61585909 - Charlie1b DNA MER1_type 0 523 1 724 250 57 0 chr12 82696580 82696808 -61585681 + L1ME3A LINE L1 5718 5958 -281 1371 133 22 4 chr12 82697017 82697242 -61585247 + L1PA15 LINE L1 5937 6165 0 697 221 5 38 chr12 82697300 82697513 -61584976 + L1M4 LINE L1 4284 4489 -1657 340 232 146 73 chr12 82697822 82697973 -61584516 - MIR SINE MIR -66 196 35 27 73 0 0 chr12 82698585 82698640 -61583849 + AT_rich Low_complexity Low_complexity 1 55 0 281 232 101 0 chr12 82699645 82699714 -61582775 - MER5C DNA MER1_type 0 324 249 1681 183 3 29 chr12 82699872 82700056 -61582433 - AluJo SINE Alu -1 311 137 1713 155 0 73 chr12 82700056 82700373 -61582116 - AluJo SINE Alu -18 294 1 1681 183 3 29 chr12 82700373 82700499 -61581990 - AluJo SINE Alu -175 137 9 250 295 48 19 chr12 82700512 82700617 -61581872 - MER5C DNA MER1_type -216 108 1 684 208 94 0 chr12 82701217 82701366 -61581123 - MIR SINE MIR -15 247 85 378 262 238 6 chr12 82701596 82701760 -61580729 + MIR SINE MIR 60 261 -1 272 261 90 45 chr12 82702361 82702495 -61579994 + MIR3 SINE MIR 43 182 -26 981 258 94 35 chr12 82702556 82702704 -61579785 + LTR16A LTR ERVL 57 195 -255 2158 72 7 18 chr12 82702704 82702980 -61579509 + AluY SINE Alu 31 303 -8 981 258 94 35 chr12 82702980 82703203 -61579286 + LTR16A LTR ERVL 195 450 0 221 206 168 61 chr12 82703246 82703377 -61579112 + MIR SINE MIR 118 262 0 417 304 173 35 chr12 82703745 82704324 -61578165 + L2 LINE L2 1728 2386 -928 267 279 26 97 chr12 82704838 82704992 -61577497 + L2 LINE L2 2941 3083 -189 188 341 12 12 chr12 82705170 82705255 -61577234 - MIR SINE MIR -80 182 98 341 275 0 33 chr12 82705311 82705402 -61577087 - MIR SINE MIR -156 106 19 22 0 0 0 chr12 82705879 82705901 -61576588 + AT_rich Low_complexity Low_complexity 1 22 0 3828 162 39 16 chr12 82705918 82706611 -61575878 + MER44D DNA MER2_type 25 605 0 27 0 0 0 chr12 82708623 82708650 -61573839 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 82708808 82708830 -61573659 + GC_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr12 82708840 82708872 -61573617 + GC_rich Low_complexity Low_complexity 1 32 0 1647 173 56 8 chr12 82709459 82709835 -61572654 - L1MC3 LINE L1 0 7785 7392 2200 104 3 13 chr12 82709967 82710274 -61572215 - AluSx SINE Alu -8 304 1 793 226 154 64 chr12 82710606 82711028 -61571461 - MLT1D LTR MaLR -1 466 7 942 273 32 10 chr12 82711411 82711719 -61570770 - MLT1G LTR MaLR -260 330 16 189 0 0 0 chr12 82711719 82711740 -61570749 + (TC)n Simple_repeat Simple_repeat 2 22 0 339 213 0 0 chr12 82711740 82711815 -61570674 + (TA)n Simple_repeat Simple_repeat 2 76 0 6075 57 5 31 chr12 82711819 82712682 -61569807 - L1PA7 LINE L1 -22 6132 5293 504 247 8 44 chr12 82712838 82712990 -61569499 - MER5B DNA MER1_type -2 176 40 202 209 23 0 chr12 82714110 82714153 -61568336 + (TG)n Simple_repeat Simple_repeat 2 45 0 299 375 31 6 chr12 82714473 82714633 -61567856 + MIR3 SINE MIR 36 199 -9 28 48 0 0 chr12 82714638 82714680 -61567809 + AT_rich Low_complexity Low_complexity 1 42 0 2227 82 0 20 chr12 82714961 82715255 -61567234 - AluSg1 SINE Alu -13 296 9 2337 95 0 0 chr12 82716521 82716855 -61565634 - AluSc SINE Alu 0 309 1 1270 194 25 50 chr12 82716867 82716887 -61565602 - AluJo SINE Alu -21 291 272 2435 114 11 22 chr12 82716887 82717255 -61565234 + THE1B LTR MaLR 1 364 0 1270 194 25 50 chr12 82717255 82717517 -61564972 - AluJo SINE Alu -40 272 16 24 39 0 0 chr12 82717532 82717558 -61564931 + AT_rich Low_complexity Low_complexity 1 26 0 423 218 0 0 chr12 82717997 82718084 -61564405 + MLT2D LTR ERVL 3 89 -325 271 140 80 0 chr12 82718085 82718135 -61564354 + MSTD LTR MaLR 1 54 -374 1090 228 33 47 chr12 82718173 82718532 -61563957 + MSTD LTR MaLR 41 394 -2 1185 174 19 132 chr12 82718539 82718902 -61563587 + MLT2D LTR ERVL 93 414 0 1329 304 26 37 chr12 82719326 82719815 -61562674 + L2 LINE L2 2523 3012 -301 654 251 22 22 chr12 82719820 82719999 -61562490 - MLT1J2 LTR MaLR -2 448 270 238 224 47 24 chr12 82720060 82720145 -61562344 - MLT1J2 LTR MaLR -299 151 65 1809 174 40 16 chr12 82721281 82721660 -61560829 + MLT1B LTR MaLR 3 390 0 2227 131 0 0 chr12 82721676 82721988 -61560501 - AluSx SINE Alu 0 312 1 747 295 75 14 chr12 82722203 82722365 -61560124 - MLT1J2 LTR MaLR -20 430 279 794 204 169 7 chr12 82722365 82722644 -61559845 + MER33 DNA MER1_type 1 324 0 747 295 75 14 chr12 82722644 82722827 -61559662 - MLT1J2 LTR MaLR -171 279 64 570 342 37 20 chr12 82722893 82723188 -61559301 + L2 LINE L2 2990 3289 -24 2434 134 37 73 chr12 82723903 82724468 -61558021 + L1MB4 LINE L1 5629 6173 -7 366 307 71 4 chr12 82724583 82724808 -61557681 + L1ME1 LINE L1 2151 2390 -3756 * 2483 127 0 34 chr12 82724803 82725244 -61557245 + L1PB4 LINE L1 5492 5917 -239 492 185 0 0 chr12 82725244 82725325 -61557164 + AluSg/x SINE Alu 204 284 -26 1263 159 33 37 chr12 82725325 82725596 -61556893 + L1PB4 LINE L1 5874 6143 -13 331 301 63 51 chr12 82725720 82726271 -61556218 + L1ME1 LINE L1 2465 3022 -3124 207 88 0 0 chr12 82726280 82726314 -61556175 + (A)n Simple_repeat Simple_repeat 1 34 0 1819 147 6 35 chr12 82726319 82726638 -61555851 + AluJo SINE Alu 1 310 -2 5034 245 33 28 chr12 82726910 82727516 -61554973 + L1ME1 LINE L1 3426 4028 -2138 2119 140 3 0 chr12 82727516 82727816 -61554673 + AluSg SINE Alu 1 301 -9 5034 245 33 28 chr12 82727816 82727905 -61554584 + L1ME1 LINE L1 4028 4115 -2051 5213 63 5 0 chr12 82727905 82728570 -61553919 - L1PA7 LINE L1 -11 6143 5476 5034 245 33 28 chr12 82728570 82730459 -61552030 + L1ME1 LINE L1 4115 6021 -145 272 242 64 38 chr12 82730526 82730683 -61551806 - MLT1H1 LTR MaLR -26 529 369 213 39 0 0 chr12 82731832 82731858 -61550631 + (T)n Simple_repeat Simple_repeat 1 26 0 207 69 0 0 chr12 82732222 82732251 -61550238 + (CA)n Simple_repeat Simple_repeat 2 30 0 28 29 0 0 chr12 82732408 82732443 -61550046 + AT_rich Low_complexity Low_complexity 1 35 0 319 315 94 42 chr12 82732488 82732701 -61549788 + L1M4 LINE L1 3517 3740 -2406 777 310 74 13 chr12 82732822 82733199 -61549290 - MLT1I LTR MaLR -7 402 3 1045 107 6 6 chr12 82733205 82733373 -61549116 + (TTCC)n Simple_repeat Simple_repeat 4 171 0 363 44 0 0 chr12 82733373 82733418 -61549071 + (TC)n Simple_repeat Simple_repeat 1 45 0 195 42 0 0 chr12 82733418 82733442 -61549047 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 35177 89 14 16 chr12 82733442 82739588 -61542901 - L1PA6 LINE L1 -16 6138 11 22 0 0 0 chr12 82740423 82740445 -61542044 + AT_rich Low_complexity Low_complexity 1 22 0 1096 282 56 21 chr12 82740474 82740656 -61541833 - MLT1I LTR MaLR -2 407 233 2363 120 25 11 chr12 82740656 82741015 -61541474 - THE1B LTR MaLR 0 364 1 1096 282 56 21 chr12 82741015 82741208 -61541281 - MLT1I LTR MaLR -176 233 19 357 24 0 0 chr12 82741222 82741264 -61541225 + (CA)n Simple_repeat Simple_repeat 1 42 0 410 116 0 0 chr12 82741836 82741906 -61540583 - THE1C LTR MaLR -32 395 288 700 227 30 30 chr12 82741909 82742107 -61540382 - MER3 DNA MER1_type -6 203 6 2043 133 0 0 chr12 82742176 82742476 -61540013 + AluY SINE Alu 1 300 -11 600 233 80 7 chr12 82742973 82743123 -61539366 - MLT1J LTR MaLR -347 164 4 384 303 107 20 chr12 82743132 82743742 -61538747 + L1M4 LINE L1 4109 4771 -1375 509 143 0 0 chr12 82743746 82743816 -61538673 + FLAM SINE Alu 47 116 -27 840 288 55 0 chr12 82743918 82744154 -61538335 + MIR SINE MIR 14 262 0 421 125 12 12 chr12 82744253 82744333 -61538156 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 26 30 0 0 chr12 82744375 82744408 -61538081 + AT_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr12 82746065 82746089 -61536400 + (A)n Simple_repeat Simple_repeat 1 24 0 273 322 94 34 chr12 82746377 82746526 -61535963 + L2 LINE L2 596 753 -2561 350 318 230 11 chr12 82746711 82747145 -61535344 + L2 LINE L2 1699 2227 -1087 393 346 90 22 chr12 82747852 82748207 -61534282 + L2 LINE L2 2286 2664 -650 182 274 39 0 chr12 82748220 82748271 -61534218 + L2 LINE L2 3185 3237 -35 180 237 0 0 chr12 82748288 82748326 -61534163 + L3 LINE CR1 516 553 -1024 1896 162 0 7 chr12 82748556 82748852 -61533637 + AluSx SINE Alu 1 294 -18 186 118 0 0 chr12 82748956 82748990 -61533499 + (TA)n Simple_repeat Simple_repeat 2 35 0 706 0 0 23 chr12 82748990 82749070 -61533419 - L1PA6 LINE L1 -7 6147 6068 5262 154 25 36 chr12 82749139 82750189 -61532300 + L1MA8 LINE L1 5254 6291 0 221 0 35 0 chr12 82750206 82750235 -61532254 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 326 237 26 70 chr12 82751158 82751272 -61531217 - MIR SINE MIR -3 259 151 398 294 65 7 chr12 82751379 82751532 -61530957 + MIR SINE MIR 87 248 -14 2094 142 0 3 chr12 82752646 82752956 -61529533 - AluSx SINE Alu -3 309 1 2831 266 68 52 chr12 82752961 82753422 -61529067 - HAL1 LINE L1 0 2507 2055 2568 105 8 3 chr12 82753422 82753784 -61528705 + THE1B LTR MaLR 1 364 0 2831 266 68 52 chr12 82753784 82754679 -61527810 - HAL1 LINE L1 -452 2055 1176 243 0 0 0 chr12 82754679 82754706 -61527783 + (TG)n Simple_repeat Simple_repeat 2 28 0 1692 174 3 17 chr12 82754706 82754994 -61527495 - AluJo SINE Alu -27 285 2 2831 266 68 52 chr12 82754994 82755055 -61527434 - HAL1 LINE L1 -1330 1177 1065 420 222 163 0 chr12 82755062 82755197 -61527292 - L1ME1 LINE L1 -4 6162 6006 * 956 217 29 24 chr12 82755186 82755527 -61526962 - L1MEc LINE L1 -3966 2430 2088 379 228 128 28 chr12 82755523 82755703 -61526786 - HAL1 LINE L1 -1416 1091 894 * 2533 133 64 0 chr12 82755716 82756168 -61526321 - L1MA8 LINE L1 -26 6265 5785 1001 216 129 36 chr12 82756169 82756339 -61526150 - MER2 DNA MER2_type 0 345 138 2498 52 0 3 chr12 82756339 82756646 -61525843 - AluY SINE Alu -3 308 3 1001 216 129 36 chr12 82756646 82756753 -61525736 - MER2 DNA MER2_type -207 138 42 1117 190 3 1 chr12 82756768 82756988 -61525501 - L1P4 LINE L1 -379 5787 5564 3434 73 0 9 chr12 82757430 82757870 -61524619 - MLT2A1 LTR ERVL -8 436 1 230 218 346 10 chr12 82758013 82758114 -61524375 + MIR SINE MIR 19 153 -109 22 56 0 0 chr12 82758337 82758373 -61524116 + AT_rich Low_complexity Low_complexity 1 36 0 280 318 69 42 chr12 82760329 82760518 -61521971 + L2 LINE L2 2357 2550 -764 282 56 0 0 chr12 82760792 82760828 -61521661 + (TA)n Simple_repeat Simple_repeat 1 36 0 1036 32 0 0 chr12 82760878 82761001 -61521488 - L1PA5 LINE L1 -8 6146 6024 258 196 0 18 chr12 82761206 82761262 -61521227 + MIR SINE MIR 99 153 -109 360 321 6 30 chr12 82761414 82761579 -61520910 + Charlie8 DNA MER1_type 18 178 -2239 564 350 44 4 chr12 82763219 82763445 -61519044 - MIR SINE MIR -2 260 26 4310 163 31 1 chr12 82764921 82765632 -61516857 - MER44D DNA MER2_type 0 605 2 733 326 107 32 chr12 82765668 82766460 -61516029 - L2 LINE L2 -1 3312 2457 4793 171 9 16 chr12 82766547 82767440 -61515049 - L1MC1 LINE L1 0 6333 5447 3325 166 50 51 chr12 82768586 82769090 -61513399 + L1MB8 LINE L1 5433 5937 -241 1823 164 23 3 chr12 82769090 82769395 -61513094 + AluJo SINE Alu 1 311 -1 3325 166 50 51 chr12 82769395 82769618 -61512871 + L1MB8 LINE L1 5937 6159 -19 4878 174 33 10 chr12 82770063 82771029 -61511460 + L1MB3 LINE L1 4969 5971 -212 2182 100 40 0 chr12 82771029 82771328 -61511161 + AluSp SINE Alu 1 311 -2 4878 174 33 10 chr12 82771328 82771533 -61510956 + L1MB3 LINE L1 5971 6170 -13 1983 152 0 7 chr12 82771552 82771861 -61510628 + AluSx SINE Alu 1 307 -5 241 254 0 51 chr12 82771861 82771910 -61510579 - MER58 DNA MER1_type -2372 48 1 1014 206 122 33 chr12 82771955 82772290 -61510199 + MLT1A1 LTR MaLR 1 365 0 189 0 0 0 chr12 82772504 82772525 -61509964 + (CAA)n Simple_repeat Simple_repeat 1 21 0 358 318 55 9 chr12 82773743 82773896 -61508593 + MIR SINE MIR 5 166 -62 2838 192 60 47 chr12 82774131 82774814 -61507675 - L1MD2 LINE L1 -11 6348 5657 25 0 0 0 chr12 82775023 82775048 -61507441 + AT_rich Low_complexity Low_complexity 1 25 0 605 323 15 46 chr12 82775398 82775661 -61506828 - MIR SINE MIR 0 262 8 1950 124 0 27 chr12 82775714 82776012 -61506477 - AluJb SINE Alu -22 290 1 382 170 53 21 chr12 82777357 82777451 -61505038 - MLT1G1 LTR MaLR 0 590 494 * 777 247 30 63 chr12 82777442 82777713 -61504776 - MLT2C1 LTR ERVL -112 285 24 405 58 0 0 chr12 82777715 82777767 -61504722 + (CA)n Simple_repeat Simple_repeat 2 53 0 1062 287 109 27 chr12 82777767 82778209 -61504280 - MLT1G1 LTR MaLR -117 478 1 2115 246 72 26 chr12 82778479 82779024 -61503465 - MLT1E LTR MaLR 0 593 24 563 16 0 0 chr12 82779879 82779943 -61502546 + L1PA4 LINE L1 5831 5894 -261 380 280 16 16 chr12 82780631 82780756 -61501733 - L1ME3A LINE L1 -8 6162 6038 325 325 138 27 chr12 82780931 82781524 -61500965 - L2 LINE L2 -831 2483 1825 271 266 156 8 chr12 82782715 82782843 -61499646 + MER117 DNA MER1_type 4 150 -47 316 268 144 21 chr12 82783027 82783124 -61499365 + MIR SINE MIR 48 156 -106 319 377 36 0 chr12 82783338 82783476 -61499013 - L2 LINE L2 -212 3060 2918 593 296 92 4 chr12 82784273 82784513 -61497976 - MIR SINE MIR -1 261 1 287 330 125 0 chr12 82784984 82785096 -61497393 + L2 LINE L2 3147 3272 0 1458 103 45 0 chr12 82785273 82785497 -61496992 - L1M3 LINE L1 -614 5554 5321 1693 176 0 3 chr12 82785507 82785813 -61496676 - L1MA6 LINE L1 -5 6295 5991 1388 205 12 62 chr12 82785822 82785933 -61496556 + L1M1 LINE L1 2880 2995 -4570 2304 114 3 0 chr12 82785933 82786239 -61496250 + AluSp SINE Alu 2 308 -5 1388 205 12 62 chr12 82786239 82786546 -61495943 + L1M1 LINE L1 2995 3277 -4288 623 165 23 15 chr12 82786581 82786714 -61495775 - L1M3 LINE L1 -822 5324 5191 592 170 19 0 chr12 82786706 82786812 -61495677 - L1MB2 LINE L1 -170 6001 5894 * 11169 31 6 0 chr12 82787615 82789706 -61492783 + L1PA4 LINE L1 4058 6153 -2 367 230 160 0 chr12 82789792 82789892 -61492597 - MER91B DNA MER1_type -61 129 14 1182 278 141 40 chr12 82790192 82790837 -61491652 + L2 LINE L2 1549 2258 -1056 442 238 112 14 chr12 82790973 82791116 -61491373 - MIR SINE MIR 0 262 106 792 285 10 5 chr12 82791155 82791355 -61491134 - MER58A DNA MER1_type 0 224 24 201 178 0 0 chr12 82791472 82791517 -61490972 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 288 205 7 0 chr12 82791902 82791968 -61490521 + MIR SINE MIR 104 172 -36 399 41 0 0 chr12 82792434 82792483 -61490006 + (TG)n Simple_repeat Simple_repeat 2 50 0 2186 112 0 0 chr12 82792484 82792769 -61489720 - AluSx SINE Alu -27 285 1 312 308 33 0 chr12 82794509 82794662 -61487827 + L2 LINE L2 3147 3264 -49 328 23 0 0 chr12 82794800 82794890 -61487599 + L1PA3 LINE L1 6110 6199 0 23 0 9 0 chr12 82795354 82795418 -61487071 + AT_rich Low_complexity Low_complexity 1 23 0 1971 122 34 6 chr12 82796025 82796353 -61486136 + L1MA4A LINE L1 5963 6299 -4 23 0 0 0 chr12 82796447 82796470 -61486019 + AT_rich Low_complexity Low_complexity 1 23 0 1990 230 82 14 chr12 82797096 82797682 -61484807 + MLT1E2 LTR MaLR 1 626 0 1872 182 114 47 chr12 82797859 82798332 -61484157 - MLT1D LTR MaLR 0 505 1 430 314 77 31 chr12 82798381 82798575 -61483914 + MLT1G1 LTR MaLR 238 440 -155 335 161 0 62 chr12 82798601 82798682 -61483807 + MLT1G1 LTR MaLR 477 552 -15 227 247 37 37 chr12 82798795 82798876 -61483613 + MIR SINE MIR 182 262 0 345 347 65 71 chr12 82799694 82800273 -61482216 + L2 LINE L2 2640 3270 -2 638 134 9 4 chr12 82800622 82800730 -61481759 - L1PB4 LINE L1 0 6156 6061 4411 165 46 51 chr12 82800760 82802112 -61480377 - L1PB4 LINE L1 -92 6064 4712 1438 119 60 5 chr12 82802112 82802330 -61480159 + MER30 DNA MER1_type 1 230 0 4411 165 46 51 chr12 82802330 82802808 -61479681 - L1PB4 LINE L1 -1444 4712 4233 203 265 39 59 chr12 82802892 82802994 -61479495 + L2 LINE L2 3131 3230 -83 240 111 0 0 chr12 82805312 82805348 -61477141 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr12 82805348 82805370 -61477119 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 82805780 82805805 -61476684 + AT_rich Low_complexity Low_complexity 1 25 0 509 161 21 0 chr12 82805929 82806022 -61476467 - U13 snRNA snRNA -9 95 1 30 0 0 0 chr12 82807507 82807537 -61474952 + AT_rich Low_complexity Low_complexity 1 30 0 266 186 71 29 chr12 82807912 82807982 -61474507 - MIR3 SINE MIR -43 165 93 502 185 130 71 chr12 82808023 82808207 -61474282 - Charlie8 DNA MER1_type -2186 231 37 5718 133 12 0 chr12 82808304 82809692 -61472797 + L1PA15 LINE L1 4751 6157 -8 713 290 80 58 chr12 82810154 82810616 -61471873 - MLT1L LTR MaLR 0 615 144 501 325 103 57 chr12 82811080 82811368 -61471121 + L2 LINE L2 2381 2691 -623 1881 136 37 7 chr12 82811368 82811663 -61470826 - AluJb SINE Alu -4 308 5 501 325 103 57 chr12 82811663 82811743 -61470746 + L2 LINE L2 2691 2766 -548 277 256 23 45 chr12 82811860 82811993 -61470496 + MLT1I LTR MaLR 50 179 -370 279 217 48 21 chr12 82812138 82812249 -61470240 + MLT1I LTR MaLR 307 577 -18 26 30 0 0 chr12 82812344 82812377 -61470112 + AT_rich Low_complexity Low_complexity 1 33 0 1824 174 7 0 chr12 82812762 82813050 -61469439 + AluJo SINE Alu 4 293 -19 191 291 31 110 chr12 82813072 82813199 -61469290 - L2 LINE L2 0 3272 3156 420 214 51 0 chr12 82813493 82813591 -61468898 + L3 LINE CR1 1186 1288 -289 186 43 0 0 chr12 82815372 82815395 -61467094 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 320 297 39 47 chr12 82815473 82815601 -61466888 + L3 LINE CR1 1443 1569 -8 2515 70 0 0 chr12 82815834 82816134 -61466355 + AluY SINE Alu 1 300 -11 289 210 25 37 chr12 82816256 82816325 -61466164 - L1 LINE L1 -1915 4231 4162 291 37 37 19 chr12 82816325 82816379 -61466110 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 43018 31 21 3 chr12 82816379 82822419 -61460070 - L1PA2 LINE L1 -2 6153 1 1217 246 176 13 chr12 82822508 82822980 -61459509 - MLT1H LTR MaLR 0 549 1 278 254 46 81 chr12 82822981 82823154 -61459335 - MIR SINE MIR -32 230 64 844 135 54 0 chr12 82824121 82824269 -61458220 + MER61-int LTR ERV1 4084 4239 -978 * 3246 113 16 6 chr12 82824244 82824731 -61457758 - MER61-int LTR ERV1 -1137 4080 3589 7488 88 11 14 chr12 82824878 82825507 -61456982 - MER61-int LTR ERV1 -1501 3716 3090 2456 80 0 10 chr12 82825507 82825821 -61456668 + AluY SINE Alu 1 311 0 7488 88 11 14 chr12 82825821 82826265 -61456224 - MER61-int LTR ERV1 -2127 3090 2646 2440 102 0 0 chr12 82826265 82826599 -61455890 - L1M1 LINE L1 -526 5779 5446 2309 108 73 14 chr12 82826599 82826943 -61455546 - THE1B LTR MaLR 0 364 1 1754 247 61 32 chr12 82826943 82828027 -61454462 - L1ME LINE L1 -439 5708 4600 464 291 94 33 chr12 82828047 82828291 -61454198 - L1ME LINE L1 -4922 1197 939 251 255 0 0 chr12 82828471 82828522 -61453967 + L2 LINE L2 3255 3305 -8 1393 174 26 71 chr12 82830421 82830545 -61451944 + AluJo SINE Alu 1 129 -183 284 48 24 0 chr12 82830545 82830587 -61451902 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1393 174 26 71 chr12 82830587 82830773 -61451716 + AluJo SINE Alu 129 297 -15 180 382 0 0 chr12 82830992 82831060 -61451429 - L2 LINE L2 -222 3050 2983 1064 331 118 14 chr12 82831123 82831928 -61450561 + L2 LINE L2 1812 2758 -556 665 304 70 21 chr12 82832283 82832526 -61449963 - MIR SINE MIR 0 262 8 375 295 57 25 chr12 82832553 82832675 -61449814 + L2 LINE L2 3147 3272 0 23 33 0 0 chr12 82833871 82833901 -61448588 + AT_rich Low_complexity Low_complexity 1 30 0 1187 297 80 9 chr12 82834268 82834692 -61447797 - MLT1J LTR MaLR -41 470 17 205 215 92 0 chr12 82835401 82835466 -61447023 + MIR SINE MIR 132 202 -60 1549 204 0 18 chr12 82835744 82836052 -61446437 - AluJo SINE Alu 0 307 5 24 0 0 0 chr12 82836163 82836187 -61446302 + AT_rich Low_complexity Low_complexity 1 24 0 1540 37 5 0 chr12 82836193 82836382 -61446107 - L1PA4 LINE L1 -2 6153 5964 383 282 61 28 chr12 82839418 82839599 -61442890 + MER117 DNA MER1_type 4 190 -7 1314 228 3 42 chr12 82840019 82840374 -61442115 - L1MCc LINE L1 -1786 5155 4815 779 244 35 16 chr12 82840370 82840624 -61441865 - L1MCc LINE L1 -3542 3399 3141 * 986 135 0 0 chr12 82840624 82840757 -61441732 + AluSq/x SINE Alu 1 133 -180 270 0 0 0 chr12 82840760 82840790 -61441699 + (TA)n Simple_repeat Simple_repeat 1 30 0 2311 244 79 68 chr12 82840813 82842134 -61440355 - L1MCc LINE L1 -3936 3186 1600 1457 135 14 5 chr12 82842134 82842356 -61440133 - AluSg/x SINE Alu -8 304 81 2311 244 79 68 chr12 82842356 82843211 -61439278 - L1MCc LINE L1 -5522 1600 755 460 167 0 0 chr12 82843423 82843495 -61438994 + FRAM SINE Alu 21 92 -84 537 299 126 14 chr12 82843537 82843902 -61438587 - L1MCc LINE L1 -5995 428 23 219 191 59 0 chr12 82844000 82844068 -61438421 + (TATAA)n Simple_repeat Simple_repeat 5 76 0 448 271 72 24 chr12 82844105 82844271 -61438218 + MIR SINE MIR 32 205 -57 26 0 0 0 chr12 82844778 82844804 -61437685 + AT_rich Low_complexity Low_complexity 1 26 0 623 301 74 15 chr12 82845005 82845208 -61437281 + MIR SINE MIR 37 251 -11 655 252 215 0 chr12 82845906 82846120 -61436369 - MIR SINE MIR -2 260 1 246 307 88 29 chr12 82847540 82847677 -61434812 + MLT1I LTR MaLR 63 207 -202 906 208 99 0 chr12 82847988 82848209 -61434280 - L1MA9 LINE L1 -418 5894 5652 1687 164 58 26 chr12 82848231 82848608 -61433881 + L1MA9 LINE L1 5886 6274 -38 230 310 20 30 chr12 82849213 82849313 -61433176 + MLT1-int LTR MaLR 1249 1347 -24 1182 237 41 35 chr12 82849699 82850041 -61432448 + L2 LINE L2 2966 3309 -4 301 280 80 7 chr12 82850057 82850207 -61432282 + L1ME4a LINE L1 5960 6120 -1 14833 131 11 15 chr12 82850894 82853322 -61429167 - Tigger1 DNA MER2_type 0 2418 1 404 314 170 14 chr12 82853322 82853545 -61428944 + MIR SINE MIR 5 262 0 4871 114 15 10 chr12 82853687 82854473 -61428016 - L1MA3 LINE L1 -5 6300 5511 896 182 19 5 chr12 82854597 82854806 -61427683 - L1MA3 LINE L1 -1639 4507 4296 432 0 0 0 chr12 82855037 82855085 -61427404 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 539 167 100 0 chr12 82855086 82855176 -61427313 - FLAM_A SINE Alu -21 121 23 435 233 43 0 chr12 82855204 82855320 -61427169 + L1MA4 LINE L1 5901 6021 -279 303 195 13 0 chr12 82855320 82855397 -61427092 + L1MB3 LINE L1 6090 6167 -16 313 340 117 29 chr12 82856604 82856810 -61425679 + L3 LINE CR1 1343 1566 -11 1195 224 66 40 chr12 82857378 82857758 -61424731 - MLT1B LTR MaLR 0 390 1 2472 105 8 3 chr12 82857771 82858124 -61424365 + THE1A LTR MaLR 1 355 0 11900 90 4 0 chr12 82858124 82859696 -61422793 + THE1A-int LTR MaLR 1 1578 -2 2473 103 11 0 chr12 82859698 82860049 -61422440 + THE1A LTR MaLR 1 355 0 374 300 116 58 chr12 82860968 82861295 -61421194 + L2 LINE L2 2541 2886 -428 190 276 52 17 chr12 82861366 82861424 -61421065 + L2 LINE L2 3002 3061 -252 862 181 0 0 chr12 82861531 82861680 -61420809 - L1PA16 LINE L1 -1 6165 6017 452 345 78 20 chr12 82861700 82862057 -61420432 - L2 LINE L2 -763 2551 2174 24 53 0 0 chr12 82862371 82862409 -61420080 + AT_rich Low_complexity Low_complexity 1 38 0 668 203 8 0 chr12 82863832 82863955 -61418534 + FLAM_A SINE Alu 1 124 -9 515 329 219 10 chr12 82864062 82864570 -61417919 + L2 LINE L2 2245 2858 -456 238 241 114 13 chr12 82864586 82864665 -61417824 + L2 LINE L2 3184 3270 -2 2440 144 65 16 chr12 82866048 82866493 -61415996 + MLT1C LTR MaLR 1 467 0 602 260 166 13 chr12 82866595 82866830 -61415659 + LTR33 LTR ERVL 4 274 -247 628 284 42 45 chr12 82867162 82867497 -61414992 - MER102b DNA MER1_type -7 334 1 283 329 35 24 chr12 82868031 82868201 -61414288 - MLT1I LTR MaLR -243 166 13 216 0 0 0 chr12 82868643 82868667 -61413822 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 863 216 39 75 chr12 82868667 82869149 -61413340 - MLT2D LTR ERVL -22 442 1 868 150 0 0 chr12 82869455 82869582 -61412907 - AluSg/x SINE Alu -14 296 170 1142 175 13 40 chr12 82869771 82869999 -61412490 + AluJb SINE Alu 86 307 -5 389 209 199 13 chr12 82870101 82870274 -61412215 - MIR SINE MIR -17 245 40 2362 103 3 0 chr12 82870297 82870607 -61411882 + AluSx SINE Alu 1 311 -1 218 383 26 9 chr12 82872212 82872327 -61410162 + L3 LINE CR1 427 543 -1034 2024 5 0 0 chr12 82872796 82873013 -61409476 + AluYa5 SINE Alu 76 292 -19 1901 148 7 3 chr12 82873269 82873566 -61408923 - AluSx SINE Alu -14 298 1 2237 125 0 3 chr12 82874953 82875265 -61407224 + AluSx SINE Alu 1 311 -1 418 9 106 18 chr12 82876072 82876185 -61406304 + (TA)n Simple_repeat Simple_repeat 2 124 0 315 184 35 0 chr12 82876255 82876342 -61406147 + (TA)n Simple_repeat Simple_repeat 1 90 0 323 282 0 39 chr12 82876342 82876445 -61406044 + L1MC4 LINE L1 6612 6710 -1332 2182 118 14 0 chr12 82876947 82877293 -61405196 - MER41B LTR ERV1 -284 351 1 1161 153 16 0 chr12 82877293 82877482 -61405007 + MSTB LTR MaLR 233 424 -2 31 68 0 0 chr12 82877819 82877878 -61404611 + AT_rich Low_complexity Low_complexity 1 59 0 1756 191 63 27 chr12 82879370 82879811 -61402678 - LTR2B LTR ERV1 0 490 34 478 272 84 75 chr12 82880547 82880708 -61401781 + L1MC5 LINE L1 7502 7660 -301 1989 136 20 26 chr12 82880708 82881053 -61401436 - MER61A LTR ERV1 0 343 1 478 272 84 75 chr12 82881053 82881237 -61401252 + L1MC5 LINE L1 7660 7850 -111 273 294 22 66 chr12 82881291 82881427 -61401062 + MARNA DNA Mariner 56 185 -401 720 279 78 36 chr12 82881814 82882172 -61400317 + MARNA DNA Mariner 201 573 -13 220 255 0 0 chr12 82882261 82882312 -61400177 + (TG)n Simple_repeat Simple_repeat 1 51 0 309 279 46 56 chr12 82884096 82884293 -61398196 - L2 LINE L2 0 3313 3119 472 332 119 61 chr12 82884467 82885192 -61397297 - L2 LINE L2 -435 2879 2113 508 248 128 13 chr12 82885195 82885344 -61397145 + MER5A DNA MER1_type 1 166 -23 236 305 225 31 chr12 82885354 82885807 -61396682 - L2 LINE L2 -1207 2107 1567 623 256 154 82 chr12 82885882 82886323 -61396166 + L2 LINE L2 2841 3313 0 526 374 35 23 chr12 82886311 82886742 -61395747 - L2 LINE L2 -1818 1496 1061 * 258 311 81 37 chr12 82887275 82887436 -61395053 + MIR SINE MIR 49 216 -46 294 29 0 0 chr12 82887766 82887801 -61394688 + (TG)n Simple_repeat Simple_repeat 2 36 0 1679 156 7 40 chr12 82888123 82888226 -61394263 + AluJb SINE Alu 1 106 -206 2371 151 44 2 chr12 82888226 82888637 -61393852 - MSTA LTR MaLR 0 428 1 1679 156 7 40 chr12 82888637 82888834 -61393655 + AluJb SINE Alu 106 291 -21 401 395 78 34 chr12 82890315 82890672 -61391817 + L2 LINE L2 2900 3272 0 423 105 12 81 chr12 82891509 82891595 -61390894 - MADE1 DNA Mariner 0 80 1 1372 189 53 22 chr12 82891688 82892006 -61390483 - MER58B DNA MER1_type 0 341 14 2231 110 0 3 chr12 82892007 82892308 -61390181 - AluSg SINE Alu -10 300 1 781 275 67 29 chr12 82892735 82893080 -61389409 - MLT1J LTR MaLR -148 363 6 184 238 25 88 chr12 82893365 82893445 -61389044 + L2 LINE L2 3239 3313 0 24995 103 13 15 chr12 82895492 82898069 -61384420 + L1PA7 LINE L1 789 3372 -3097 2520 56 7 10 chr12 82898069 82898375 -61384114 + AluY SINE Alu 1 305 -6 24995 103 13 15 chr12 82898375 82898974 -61383515 + L1PA7 LINE L1 3372 3971 -2498 198 0 0 0 chr12 82898974 82898996 -61383493 + (CAA)n Simple_repeat Simple_repeat 3 24 0 24995 103 13 15 chr12 82898996 82901430 -61381059 + L1PA7 LINE L1 3971 6455 -14 468 248 108 19 chr12 82902728 82902885 -61379604 + MLT1J1 LTR MaLR 1 171 -275 2341 140 22 0 chr12 82903562 82903918 -61378571 - THE1B LTR MaLR 0 364 1 317 318 0 0 chr12 82905607 82905692 -61376797 - MIR3 SINE MIR -5 203 119 201 39 0 0 chr12 82905764 82905790 -61376699 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 296 258 82 0 chr12 82906345 82906453 -61376036 + MIR SINE MIR 35 154 -54 1585 186 120 28 chr12 82906682 82907139 -61375350 + L1ME2 LINE L1 5657 6155 -9 192 250 21 21 chr12 82908415 82908463 -61374026 - L2 LINE L2 -2047 1267 1220 406 289 52 22 chr12 82908500 82908635 -61373854 - MIR3 SINE MIR -5 203 65 6498 122 8 7 chr12 82908648 82909943 -61372546 + L1MA5A LINE L1 5004 6296 -1 26 0 0 0 chr12 82910683 82910709 -61371780 + AT_rich Low_complexity Low_complexity 1 26 0 235 275 40 64 chr12 82911265 82911405 -61371084 - MIR SINE MIR -56 206 72 518 301 56 36 chr12 82911725 82911974 -61370515 - MLT1K LTR MaLR -29 559 306 22 35 0 0 chr12 82912221 82912250 -61370239 + AT_rich Low_complexity Low_complexity 1 29 0 780 276 51 19 chr12 82912783 82913098 -61369391 - L1MEd LINE L1 -5282 837 513 252 278 35 53 chr12 82913110 82913279 -61369210 - L1MEd LINE L1 -5779 340 175 236 190 10 90 chr12 82913453 82913553 -61368936 + T-rich Low_complexity Low_complexity 3 94 0 21 89 0 0 chr12 82913636 82913692 -61368797 + AT_rich Low_complexity Low_complexity 1 56 0 393 22 0 0 chr12 82914170 82914216 -61368273 + (TG)n Simple_repeat Simple_repeat 1 46 0 386 252 98 14 chr12 82914425 82914568 -61367921 - L2 LINE L2 0 3313 3159 367 251 53 41 chr12 82914587 82914758 -61367731 + MER104 DNA Tc2 6 178 -2 712 137 0 0 chr12 82914841 82914965 -61367524 - L1MA4 LINE L1 -6 6294 6171 307 276 53 0 chr12 82914974 82915050 -61367439 - L2 LINE L2 -243 3070 2991 2224 118 48 25 chr12 82915060 82915415 -61367074 - THE1B LTR MaLR -1 363 1 5913 98 51 0 chr12 82915415 82916284 -61366205 - THE1B-int LTR MaLR 0 1580 668 30969 48 3 0 chr12 82916284 82920324 -61362165 - L1P LINE L1 -1473 4673 623 680 80 0 0 chr12 82920322 82920410 -61362079 - L1P LINE L1 -6048 98 11 * 233 98 73 0 chr12 82920417 82920458 -61362031 - THE1B-int LTR MaLR -1536 44 1 2046 142 51 25 chr12 82920460 82920813 -61361676 - THE1B LTR MaLR -2 362 1 201 250 18 71 chr12 82920817 82920873 -61361616 + MER91 DNA MER1_type 9 61 -79 586 327 148 6 chr12 82920923 82921182 -61361307 - L2 LINE L2 -321 2992 2696 489 225 25 33 chr12 82921187 82921307 -61361182 - L2 LINE L2 -765 2549 2431 3379 23 0 0 chr12 82922356 82922751 -61359738 - L1PA3 LINE L1 0 6155 5761 28 71 0 0 chr12 82923043 82923099 -61359390 + AT_rich Low_complexity Low_complexity 1 56 0 504 60 9 52 chr12 82923106 82923222 -61359267 + (TTATA)n Simple_repeat Simple_repeat 4 114 0 1066 228 84 15 chr12 82925400 82925734 -61356755 + MLT1C LTR MaLR 111 467 0 2255 122 3 3 chr12 82925852 82926164 -61356325 + AluJb SINE Alu 1 312 0 1191 157 29 9 chr12 82926190 82926400 -61356089 + MER20 DNA MER1_type 5 218 -1 212 233 71 104 chr12 82926422 82926522 -61355967 + MIR SINE MIR 43 141 -67 300 283 101 36 chr12 82926996 82927134 -61355355 - MIR SINE MIR -82 180 34 1736 147 4 28 chr12 82927561 82927950 -61354539 + Charlie3 DNA MER1_type 1 2712 0 231 88 0 0 chr12 82928083 82928117 -61354372 + (TG)n Simple_repeat Simple_repeat 2 35 0 729 268 123 24 chr12 82928228 82928684 -61353805 + HsTC2 DNA Tc2 1218 1894 -4 25 31 0 0 chr12 82929115 82929147 -61353342 + AT_rich Low_complexity Low_complexity 1 32 0 1177 197 57 42 chr12 82929203 82929586 -61352903 + MLT2B1 LTR ERVL 4 391 -73 1852 146 7 14 chr12 82929645 82929933 -61352556 - AluJb SINE Alu -6 306 21 700 195 169 0 chr12 82929965 82930119 -61352370 + MER5A DNA MER1_type 9 188 -1 356 0 0 22 chr12 82930302 82930347 -61352142 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 584 219 88 0 chr12 82930365 82930479 -61352010 - FLAM_C SINE Alu -19 124 1 22 0 0 0 chr12 82930481 82930503 -61351986 + AT_rich Low_complexity Low_complexity 1 22 0 1792 107 0 4 chr12 82930581 82930824 -61351665 - AluSg SINE Alu -66 244 3 2295 55 10 10 chr12 82932152 82932445 -61350044 - AluY SINE Alu -18 293 1 198 0 0 0 chr12 82932484 82932506 -61349983 + (TAAAAA)n Simple_repeat Simple_repeat 1 22 0 210 226 83 95 chr12 82932687 82932771 -61349718 - MER5A DNA MER1_type 0 189 107 903 198 21 36 chr12 82932855 82932964 -61349525 - MER5A DNA MER1_type 0 189 83 1559 173 54 4 chr12 82932964 82933242 -61349247 - AluJb SINE Alu -12 300 9 903 198 21 36 chr12 82933242 82933324 -61349165 - MER5A DNA MER1_type -106 83 1 597 237 28 23 chr12 82933332 82933509 -61348980 + MER5B DNA MER1_type 1 178 0 840 237 6 6 chr12 82933526 82933699 -61348790 - MER5B DNA MER1_type -1 177 5 506 267 48 46 chr12 82934483 82934675 -61347814 + MIR SINE MIR 61 256 -6 444 311 54 71 chr12 82934804 82935100 -61347389 - L2 LINE L2 -16 3256 2966 720 229 27 27 chr12 82935306 82935494 -61346995 + MER5A DNA MER1_type 1 188 -1 1069 206 135 0 chr12 82935497 82935778 -61346711 + MLT1A1 LTR MaLR 1 319 -46 31 0 0 0 chr12 82936532 82936563 -61345926 + AT_rich Low_complexity Low_complexity 1 31 0 200 59 29 0 chr12 82939351 82939385 -61343104 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 2101 121 0 7 chr12 82939392 82939681 -61342808 - AluSx SINE Alu -25 287 1 421 228 32 49 chr12 82940563 82940701 -61341788 - MER5A DNA MER1_type -52 126 4 29 28 0 0 chr12 82942572 82942608 -61339881 + GC_rich Low_complexity Low_complexity 1 36 0 329 315 117 28 chr12 82943124 82943337 -61339152 - L1M2 LINE L1 -5599 1250 1019 256 242 66 0 chr12 82943424 82943515 -61338974 + CT-rich Low_complexity Low_complexity 3 99 0 198 71 0 0 chr12 82945182 82945210 -61337279 + (TG)n Simple_repeat Simple_repeat 1 28 0 3161 164 48 2 chr12 82945788 82946366 -61336123 - MER6A DNA MER2_type 0 605 1 4391 259 76 23 chr12 82947787 82949120 -61333369 - MSTD-int LTR MaLR -331 1404 2 575 272 37 16 chr12 82949127 82949318 -61333171 - MSTD LTR MaLR -5 391 197 2048 197 10 10 chr12 82950221 82950617 -61331872 - MSTD LTR MaLR 0 396 1 1069 156 68 0 chr12 82950617 82950822 -61331667 - MSTD-int LTR MaLR 0 1735 1517 365 186 82 0 chr12 82950955 82951052 -61331437 - MSTD LTR MaLR -289 107 3 23 0 0 0 chr12 82952749 82952772 -61329717 + AT_rich Low_complexity Low_complexity 1 23 0 708 152 20 7 chr12 82954387 82954538 -61327951 + CT-rich Low_complexity Low_complexity 2 154 0 218 81 27 0 chr12 82954567 82954604 -61327885 + (TTTCC)n Simple_repeat Simple_repeat 5 42 0 218 81 27 0 chr12 82954638 82954675 -61327814 + (TTTCC)n Simple_repeat Simple_repeat 5 42 0 338 145 0 14 chr12 82954720 82954789 -61327700 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 279 122 0 0 chr12 82954838 82954887 -61327602 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 799 310 62 22 chr12 82954890 82955213 -61327276 - L2 LINE L2 -887 2427 2092 2276 115 3 0 chr12 82957186 82957491 -61324998 - AluSx SINE Alu -6 306 1 222 188 21 0 chr12 82957497 82957545 -61324944 + MER5B DNA MER1_type 117 165 -13 185 397 98 35 chr12 82958392 82958881 -61323608 + L2 LINE L2 162 681 -2633 276 91 0 0 chr12 82959042 82959086 -61323403 + (A)n Simple_repeat Simple_repeat 1 44 0 312 321 135 65 chr12 82959969 82960458 -61322031 + L2 LINE L2 2008 2530 -784 295 106 47 12 chr12 82960481 82960566 -61321923 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 259 211 132 0 chr12 82961646 82961683 -61320806 + MIR SINE MIR 161 192 -70 2353 54 0 20 chr12 82961683 82961977 -61320512 + AluY SINE Alu 17 304 -7 259 211 132 0 chr12 82961977 82962015 -61320474 + MIR SINE MIR 192 246 -16 450 313 63 83 chr12 82962396 82962747 -61319742 + L2 LINE L2 1948 2291 -1023 244 344 69 15 chr12 82962890 82963021 -61319468 + MIR3 SINE MIR 13 150 -58 403 280 32 16 chr12 82964404 82964529 -61317960 + MIR SINE MIR 19 145 -63 2193 132 0 0 chr12 82964537 82964840 -61317649 + AluSx SINE Alu 1 303 -9 237 309 41 57 chr12 82965326 82965449 -61317040 + MIR3 SINE MIR 3 123 -85 2510 37 7 3 chr12 82965517 82965817 -61316672 + AluY SINE Alu 1 301 -10 942 253 39 9 chr12 82965896 82966129 -61316360 + MIR SINE MIR 19 258 -4 220 274 0 0 chr12 82966129 82966180 -61316309 + (ATG)n Simple_repeat Simple_repeat 2 52 0 322 352 160 14 chr12 82966180 82966393 -61316096 - L3 LINE CR1 -102 1475 1232 247 266 30 77 chr12 82967125 82967294 -61315195 + L2 LINE L2 3152 3312 -1 255 157 0 0 chr12 82967868 82967919 -61314570 + GA-rich Low_complexity Low_complexity 2 52 0 258 222 56 42 chr12 82968119 82968191 -61314298 - L2 LINE L2 0 3313 3241 323 23 23 0 chr12 82969340 82969384 -61313105 + (TG)n Simple_repeat Simple_repeat 2 46 0 450 283 74 107 chr12 82971037 82971550 -61310939 - MLT1L LTR MaLR 0 615 120 2431 61 3 10 chr12 82971908 82972218 -61310271 + AluY SINE Alu 1 308 -3 2160 211 40 38 chr12 82973116 82973648 -61308841 + MLT1F LTR MaLR 8 540 -2 183 200 156 0 chr12 82974396 82974441 -61308048 + L3 LINE CR1 454 505 -1072 24 0 0 0 chr12 82974485 82974509 -61307980 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr12 82975406 82975449 -61307040 + AT_rich Low_complexity Low_complexity 1 43 0 259 292 0 0 chr12 82976439 82976511 -61305978 - MER46C DNA MER2_type -19 319 248 228 320 0 0 chr12 82976520 82976595 -61305894 + (TA)n Simple_repeat Simple_repeat 1 75 0 321 299 0 0 chr12 82976595 82976702 -61305787 - MER46C DNA MER2_type -89 249 143 1792 199 38 48 chr12 82976729 82976778 -61305711 + MLT1D LTR MaLR 31 79 -426 2612 110 3 6 chr12 82976778 82977143 -61305346 - THE1B LTR MaLR 0 364 1 1792 199 38 48 chr12 82977143 82977571 -61304918 + MLT1D LTR MaLR 79 503 -2 266 167 45 0 chr12 82977614 82977680 -61304809 - MER46C DNA MER2_type -269 69 1 1459 206 34 7 chr12 82978972 82979268 -61303221 + AluJo SINE Alu 1 304 -8 21 57 0 0 chr12 82980243 82980278 -61302211 + AT_rich Low_complexity Low_complexity 1 35 0 202 303 121 57 chr12 82980320 82980584 -61301905 - L2 LINE L2 -188 3084 2804 412 282 51 0 chr12 82980781 82980898 -61301591 + MIR SINE MIR 73 195 -67 237 153 51 0 chr12 82981666 82981725 -61300764 + (TA)n Simple_repeat Simple_repeat 2 63 0 1856 123 4 0 chr12 82982001 82982261 -61300228 - AluSx SINE Alu -5 307 47 210 297 89 48 chr12 82983895 82984035 -61298454 - MIR SINE MIR -65 143 34 182 240 120 40 chr12 82985275 82985350 -61297139 - MIR SINE MIR -86 122 42 198 0 0 0 chr12 82985635 82985657 -61296832 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1440 143 70 8 chr12 82988130 82988529 -61293960 - MER21A LTR ERV1 -371 492 48 2877 116 16 5 chr12 82988800 82989223 -61293266 - MSTA LTR MaLR 0 428 1 201 125 0 0 chr12 82989289 82989321 -61293168 - MIR SINE MIR -6 256 225 1660 205 135 26 chr12 82989366 82989819 -61292670 - MLT1D LTR MaLR 0 505 4 623 222 121 56 chr12 82989855 82990053 -61292436 - MIR SINE MIR -3 259 49 209 243 122 27 chr12 82990107 82990181 -61292308 + MIR SINE MIR 42 122 -86 204 385 82 7 chr12 82990226 82990361 -61292128 - MIR SINE MIR -105 157 13 183 346 135 0 chr12 82992156 82992260 -61290229 - MIR SINE MIR -56 152 35 2345 105 0 0 chr12 82992865 82993169 -61289320 + AluSc SINE Alu 1 304 -5 185 321 48 12 chr12 82994343 82994427 -61288062 - L2 LINE L2 -218 3054 2968 277 222 0 78 chr12 82994828 82994918 -61287571 + MIR SINE MIR 168 250 -12 331 210 148 0 chr12 82996753 82996834 -61285655 + L2 LINE L2 3217 3309 -4 213 244 22 0 chr12 82996962 82997007 -61285482 - L3 LINE CR1 -15 1562 1517 281 321 169 25 chr12 82997720 82997963 -61284526 - L3 LINE CR1 -203 1374 1097 2337 97 0 3 chr12 82998588 82998896 -61283593 - AluSc SINE Alu -2 307 1 1761 118 94 14 chr12 82999345 82999632 -61282857 - AluSg SINE Alu 0 310 1 756 161 31 8 chr12 82999652 82999782 -61282707 - AluJb SINE Alu -179 133 1 5490 180 53 9 chr12 82999861 83001444 -61281045 - L1MC1 LINE L1 -11 6716 5062 24 0 0 0 chr12 83004295 83004319 -61278170 + AT_rich Low_complexity Low_complexity 1 24 0 225 255 0 0 chr12 83004899 83004950 -61277539 + GA-rich Low_complexity Low_complexity 1 51 0 375 290 155 24 chr12 83005500 83005707 -61276782 - MIR SINE MIR -16 246 13 390 363 71 0 chr12 83005966 83006148 -61276341 + MIR SINE MIR 11 205 -57 2522 238 55 33 chr12 83007546 83007882 -61274607 - L1MC1 LINE L1 -3060 3480 3153 1358 207 20 17 chr12 83007882 83008177 -61274312 - AluJo SINE Alu -16 296 1 2522 238 55 33 chr12 83008177 83008920 -61273569 - L1MC1 LINE L1 -3387 3153 2411 1613 154 161 0 chr12 83008923 83009221 -61273268 + MER7A DNA MER2_type 3 346 0 920 293 103 94 chr12 83009308 83010467 -61272022 - L1MC1 LINE L1 -4369 2171 1003 3493 77 4 0 chr12 83010503 83010957 -61271532 - L1PA7 LINE L1 -14 6140 5685 1866 57 0 0 chr12 83010957 83011203 -61271286 + L1P LINE L1 4948 5193 -953 229 247 52 0 chr12 83012112 83012189 -61270300 - L1MC1 LINE L1 -5967 563 483 379 299 99 22 chr12 83012447 83012761 -61269728 - L1ME4a LINE L1 -266 5855 5518 198 398 51 11 chr12 83012998 83013174 -61269315 + L2 LINE L2 2703 2885 -429 235 329 61 0 chr12 83013481 83013563 -61268926 + L2 LINE L2 3227 3313 0 1836 125 148 34 chr12 83014631 83015015 -61267474 - MSTA LTR MaLR 0 428 1 222 315 82 68 chr12 83015080 83015226 -61267263 - L2 LINE L2 -21 3251 3104 532 295 162 14 chr12 83016122 83016332 -61266157 + MIR SINE MIR 14 254 -8 2087 111 0 14 chr12 83018842 83019229 -61263260 + AluSc SINE Alu 1 383 0 594 275 36 6 chr12 83019803 83019970 -61262519 - MIR SINE MIR -13 249 78 416 260 58 52 chr12 83020800 83020954 -61261535 - MIR SINE MIR -55 207 53 188 341 0 12 chr12 83021459 83021544 -61260945 + L2 LINE L2 3178 3261 -52 258 299 188 8 chr12 83021622 83021739 -61260750 + MIR SINE MIR 3 140 -122 922 456 13 0 chr12 83021832 83022130 -61260359 + AluSx SINE Alu 1 302 0 1401 162 132 43 chr12 83022153 83022267 -61260222 - THE1B LTR MaLR -34 330 228 2187 111 14 0 chr12 83022267 83022564 -61259925 - AluSx SINE Alu -11 301 1 1401 162 132 43 chr12 83022564 83022752 -61259737 - THE1B LTR MaLR -136 228 1 474 265 12 30 chr12 83023898 83024045 -61258444 + MIR3 SINE MIR 37 174 -34 23 0 0 0 chr12 83025996 83026019 -61256470 + AT_rich Low_complexity Low_complexity 1 23 0 379 242 53 0 chr12 83027355 83027450 -61255039 + MER5A DNA MER1_type 3 102 -87 26 101 0 0 chr12 83028203 83028292 -61254197 + AT_rich Low_complexity Low_complexity 1 89 0 1022 198 40 27 chr12 83029157 83029379 -61253110 + LTR48B LTR ERV1 1 225 -419 31 26 0 0 chr12 83029493 83029531 -61252958 + GC_rich Low_complexity Low_complexity 1 38 0 210 197 30 30 chr12 83029532 83029598 -61252891 + C-rich Low_complexity Low_complexity 1 66 0 350 355 0 27 chr12 83029721 83029904 -61252585 + C-rich Low_complexity Low_complexity 2 179 0 941 208 149 50 chr12 83030032 83030455 -61252034 + LTR48B LTR ERV1 180 644 0 210 118 0 0 chr12 83031283 83031317 -61251172 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 2174 110 0 10 chr12 83032965 83033256 -61249233 - AluSx SINE Alu -24 288 1 291 324 9 29 chr12 83034199 83034304 -61248185 + L2 LINE L2 3170 3272 0 28 0 0 0 chr12 83034830 83034858 -61247631 + AT_rich Low_complexity Low_complexity 1 28 0 301 171 71 14 chr12 83036991 83037061 -61245428 + L1ME4a LINE L1 6020 6093 -28 259 277 62 80 chr12 83037118 83037230 -61245259 - L2 LINE L2 -15 3257 3148 654 151 17 0 chr12 83037455 83037574 -61244915 - L1PB4 LINE L1 -2 6154 6034 2058 62 12 4 chr12 83037970 83038229 -61244260 + AluY SINE Alu 51 311 0 559 206 38 0 chr12 83038537 83038668 -61243821 - MER103 DNA DNA -11 155 20 182 211 175 0 chr12 83038760 83038817 -61243672 - MER5C DNA MER1_type -1 323 257 193 189 0 0 chr12 83038935 83038972 -61243517 - MER5C DNA MER1_type -200 124 88 414 247 169 13 chr12 83039059 83039213 -61243276 + MER5A DNA MER1_type 9 186 -3 867 214 176 0 chr12 83039228 83039501 -61242988 - MER33 DNA MER1_type -4 320 1 267 259 0 0 chr12 83039502 83039556 -61242933 + L2 LINE L2 3214 3267 -5 1855 137 35 3 chr12 83040450 83040734 -61241755 - AluSx SINE Alu -8 304 12 308 247 82 31 chr12 83040956 83041053 -61241436 + MIR SINE MIR 102 203 -59 259 281 11 45 chr12 83041113 83041202 -61241287 + L1MC4a LINE L1 5497 5582 -539 294 232 137 33 chr12 83041289 83041458 -61241031 + L1MC4a LINE L1 5709 5893 -228 707 172 0 140 chr12 83044402 83044588 -61237901 + FRAM SINE Alu 1 156 -20 1164 186 199 25 chr12 83044672 83045064 -61237425 - MLT1C LTR MaLR -7 460 1 197 349 72 40 chr12 83045090 83045165 -61237324 - L2 LINE L2 0 3272 3201 2189 103 7 0 chr12 83045165 83045456 -61237033 + AluSx SINE Alu 6 298 -14 197 349 72 40 chr12 83045456 83045532 -61236957 - L2 LINE L2 -71 3201 3116 537 192 89 14 chr12 83045692 83045838 -61236651 + MER103 DNA DNA 3 159 -7 1573 202 3 26 chr12 83046671 83046973 -61235516 - AluJo SINE Alu -17 295 1 23 78 0 0 chr12 83049083 83049134 -61233355 + AT_rich Low_complexity Low_complexity 1 51 0 2801 231 75 8 chr12 83049404 83050395 -61232094 - L1ME1 LINE L1 -5 6161 5099 451 359 57 10 chr12 83051199 83051408 -61231081 + MIR SINE MIR 28 246 -16 884 231 30 0 chr12 83052988 83053187 -61229302 - MER3 DNA MER1_type -3 206 2 1679 172 0 33 chr12 83053863 83054165 -61228324 + AluJb SINE Alu 1 292 -20 21 57 0 0 chr12 83055843 83055878 -61226611 + AT_rich Low_complexity Low_complexity 1 35 0 2269 102 0 3 chr12 83056326 83056630 -61225859 - AluY SINE Alu -8 303 1 231 180 80 0 chr12 83056881 83056931 -61225558 - MLT1I LTR MaLR 0 409 356 467 241 184 7 chr12 83056978 83057119 -61225370 - MLT1I LTR MaLR -151 258 93 1481 188 102 10 chr12 83057325 83057639 -61224850 - MER2 DNA MER2_type -1 343 1 242 157 0 20 chr12 83057643 83057694 -61224795 + (TA)n Simple_repeat Simple_repeat 1 50 0 659 248 124 0 chr12 83057907 83058109 -61224380 + MIR SINE MIR 20 246 -16 602 289 81 25 chr12 83058674 83058909 -61223580 - MIR SINE MIR -2 260 13 694 213 109 50 chr12 83060118 83060357 -61222132 + MIR SINE MIR 9 261 -1 1615 165 13 32 chr12 83060448 83060757 -61221732 - AluSx SINE Alu -9 303 1 5369 70 1 0 chr12 83062279 83062976 -61219513 - L1PA8 LINE L1 -1 6171 5474 7114 52 11 0 chr12 83062980 83064000 -61218489 - L1PA7 LINE L1 -10 6144 5124 3097 137 21 0 chr12 83064000 83064075 -61218414 - L1P3 LINE L1 -5969 492 420 206 81 27 0 chr12 83064075 83064112 -61218377 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3097 137 21 0 chr12 83064112 83064518 -61217971 - L1P3 LINE L1 -6041 420 1 * 20667 97 18 6 chr12 83064489 83067669 -61214820 - L1P3 LINE L1 -647 5840 2634 238 319 93 3 chr12 83067820 83068008 -61214481 + MIR3 SINE MIR 10 262 0 1361 163 53 0 chr12 83068492 83068737 -61213752 - L1PB4 LINE L1 -5 6151 5894 864 204 0 23 chr12 83069634 83069810 -61212679 - FRAM SINE Alu -10 166 1 249 316 54 30 chr12 83070081 83070249 -61212240 - MARNA DNA Mariner -29 557 386 266 231 66 0 chr12 83070285 83070376 -61212113 + MARNA DNA Mariner 259 355 -231 1197 170 5 27 chr12 83071440 83071664 -61210825 + MER20 DNA MER1_type 1 219 0 2045 121 0 0 chr12 83071974 83072247 -61210242 + AluSx SINE Alu 1 273 -39 180 0 0 0 chr12 83072248 83072268 -61210221 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 378 0 0 0 chr12 83072267 83072309 -61210180 + (CA)n Simple_repeat Simple_repeat 1 42 0 1772 237 65 60 chr12 83075120 83075737 -61206752 - MLT1E2 LTR MaLR 0 626 7 475 301 70 0 chr12 83076078 83076264 -61206225 + MER46C DNA MER2_type 82 280 -58 1977 160 0 7 chr12 83076272 83076579 -61205910 - AluSx SINE Alu -7 305 1 23 86 0 0 chr12 83078070 83078128 -61204361 + AT_rich Low_complexity Low_complexity 1 58 0 249 304 43 14 chr12 83078347 83078416 -61204073 + Charlie1 DNA MER1_type 1 71 -2690 1039 204 119 36 chr12 83078421 83078783 -61203706 + Charlie1 DNA MER1_type 2364 2755 -6 23 54 0 0 chr12 83079233 83079270 -61203219 + AT_rich Low_complexity Low_complexity 1 37 0 572 278 123 45 chr12 83079282 83079543 -61202946 - L1ME2 LINE L1 -280 5884 5645 2007 191 112 7 chr12 83079543 83079998 -61202491 - MLT1D LTR MaLR 0 505 3 572 278 123 45 chr12 83079998 83080222 -61202267 - L1ME2 LINE L1 -519 5645 5361 501 17 0 0 chr12 83081482 83081540 -61200949 + (TATAG)n Simple_repeat Simple_repeat 5 62 0 228 323 38 15 chr12 83081579 83081712 -61200777 - MLT1K LTR MaLR 0 588 453 2128 118 13 7 chr12 83081720 83082024 -61200465 - AluSq SINE Alu -7 306 1 229 254 55 0 chr12 83082214 83082269 -61200220 + MIR SINE MIR 118 175 -87 1755 221 52 48 chr12 83082272 83082787 -61199702 - LTR40a LTR ERVL 0 519 3 799 282 65 21 chr12 83082789 83083129 -61199360 - HERVL40 LTR ERVL 0 5530 2783 464 278 36 46 chr12 83083758 83083952 -61198537 + L2 LINE L2 3122 3313 0 1306 149 32 24 chr12 83084266 83084514 -61197975 + L1MB3 LINE L1 5931 6180 -3 792 246 42 42 chr12 83084558 83084773 -61197716 + MIR SINE MIR 48 262 0 190 372 93 0 chr12 83085127 83085213 -61197276 + L2 LINE L2 3143 3236 -36 514 284 125 0 chr12 83085245 83085453 -61197036 + MIR SINE MIR 28 261 -1 272 295 74 32 chr12 83085564 83085659 -61196830 - MLT1J2 LTR MaLR -119 331 233 21 57 0 0 chr12 83085888 83085923 -61196566 + AT_rich Low_complexity Low_complexity 1 35 0 21866 152 29 25 chr12 83086849 83091923 -61190566 + L1MA3 LINE L1 15 5069 -2655 387 0 0 0 chr12 83091923 83091966 -61190523 + (CA)n Simple_repeat Simple_repeat 2 44 0 21866 152 29 25 chr12 83091966 83094291 -61188198 + L1MA3 LINE L1 5069 7450 -274 2046 129 3 59 chr12 83094291 83094648 -61187841 - MER1B DNA MER1_type 0 337 1 21866 152 29 25 chr12 83094648 83094914 -61187575 + L1MA3 LINE L1 7450 7714 -10 3356 174 40 16 chr12 83095303 83096244 -61186245 - L1MA9 LINE L1 -392 5920 4965 213 262 68 68 chr12 83096910 83097013 -61185476 + MIR SINE MIR 2 104 -158 314 245 72 43 chr12 83097035 83097174 -61185315 - MIR SINE MIR -1 261 119 195 310 35 11 chr12 83097149 83097236 -61185253 + MIR SINE MIR 70 158 -104 * 2057 91 4 0 chr12 83097263 83097539 -61184950 + L1PA8 LINE L1 5886 6162 -10 204 122 61 0 chr12 83097671 83097720 -61184769 + (TA)n Simple_repeat Simple_repeat 1 52 0 36340 68 7 4 chr12 83098789 83103946 -61178543 + L1PA5 LINE L1 13 5185 -982 288 0 0 0 chr12 83103946 83103978 -61178511 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 36340 68 7 4 chr12 83103978 83104965 -61177524 + L1PA5 LINE L1 5185 6167 0 413 328 134 22 chr12 83106033 83106390 -61176099 + L2 LINE L2 2913 3309 -4 641 283 26 43 chr12 83106471 83106701 -61175788 - MIR SINE MIR -8 254 29 1713 60 0 36 chr12 83107004 83107252 -61175237 - L1PA4 LINE L1 0 6155 5917 349 255 52 46 chr12 83107419 83107572 -61174917 + MLT1J LTR MaLR 279 432 -79 2334 107 0 0 chr12 83110051 83110359 -61172130 + AluSg1 SINE Alu 1 308 -1 351 234 45 36 chr12 83110716 83110827 -61171662 + MIR SINE MIR 93 204 -58 479 17 17 0 chr12 83110833 83110893 -61171596 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 5936 163 40 14 chr12 83111651 83113718 -61168771 + L1MA7 LINE L1 4168 6278 -13 602 215 52 52 chr12 83114089 83114261 -61168228 + MER69A DNA AcHobo 3 174 -3 463 161 0 12 chr12 83114564 83114645 -61167844 + MER3 DNA MER1_type 35 114 -95 309 267 0 10 chr12 83114685 83114786 -61167703 + MER3 DNA MER1_type 2485 2584 0 450 355 121 22 chr12 83114792 83115155 -61167334 + L2 LINE L2 2222 2620 -694 21 0 0 0 chr12 83115707 83115728 -61166761 + AT_rich Low_complexity Low_complexity 1 21 0 419 230 0 0 chr12 83117347 83117434 -61165055 + MIR SINE MIR 166 252 -10 4916 104 38 35 chr12 83117674 83118526 -61163963 - L1MA2 LINE L1 0 6304 5451 335 289 55 2 chr12 83118757 83118881 -61163608 + MIR SINE MIR 42 173 -62 219 146 0 0 chr12 83120343 83120369 -61162120 + (TG)n Simple_repeat Simple_repeat 2 30 -19 2586 113 39 14 chr12 83120369 83120785 -61161704 + MSTA LTR MaLR 2 427 -1 219 146 0 0 chr12 83120785 83120806 -61161683 + (TG)n Simple_repeat Simple_repeat 29 49 0 292 161 54 0 chr12 83121279 83121335 -61161154 - L2 LINE L2 0 3272 3214 2434 68 0 3 chr12 83122382 83122675 -61159814 - AluY SINE Alu -19 292 1 500 157 7 100 chr12 83123468 83123608 -61158881 + FLAM_A SINE Alu 1 127 -6 979 228 64 4 chr12 83123728 83124040 -61158449 - MER33 DNA MER1_type 0 324 1 1481 142 0 136 chr12 83127720 83128036 -61154453 - AluJb SINE Alu -39 273 1 353 326 50 6 chr12 83129582 83129763 -61152726 + Charlie8 DNA MER1_type 88 276 -2141 292 203 51 38 chr12 83129781 83129860 -61152629 + MER63 DNA MER1_type 1 706 -130 2111 160 9 9 chr12 83130176 83130513 -61151976 + MER1B DNA MER1_type 1 337 0 190 287 130 9 chr12 83131379 83131484 -61151005 - L3 LINE CR1 -211 1366 1249 236 286 63 32 chr12 83131484 83131610 -61150879 + MIR SINE MIR 2 131 -131 28 0 0 0 chr12 83132105 83132133 -61150356 + AT_rich Low_complexity Low_complexity 1 28 0 469 325 95 50 chr12 83132528 83132971 -61149518 - LTR67 LTR ERVL -59 498 36 890 217 46 0 chr12 83133106 83133281 -61149208 + MER5A DNA MER1_type 1 183 -6 192 328 0 0 chr12 83133904 83133962 -61148527 - L2 LINE L2 0 3313 3256 2285 131 22 3 chr12 83134365 83134723 -61147766 - MLT1A1 LTR MaLR 0 365 1 235 218 36 0 chr12 83135096 83135151 -61147338 - MIR SINE MIR -143 119 63 249 295 77 0 chr12 83135211 83135289 -61147200 - MIR SINE MIR -118 144 61 793 214 17 17 chr12 83135955 83136133 -61146356 - MER45A DNA AcHobo 0 178 1 2129 130 7 0 chr12 83136299 83136600 -61145889 - AluSq SINE Alu -10 303 1 430 294 94 56 chr12 83137932 83138166 -61144323 - MIR SINE MIR -9 253 5 291 314 58 50 chr12 83138425 83138546 -61143943 - L2 LINE L2 0 3272 3151 220 23 0 93 chr12 83138903 83138946 -61143543 + (TATATG)n Simple_repeat Simple_repeat 1 39 0 357 242 0 22 chr12 83138946 83139037 -61143452 + L1MC4 LINE L1 6615 6703 -1339 354 229 138 0 chr12 83139087 83139196 -61143293 - MLT1H1 LTR MaLR -2 553 430 * 517 310 35 0 chr12 83139192 83139334 -61143155 - MLT1H1 LTR MaLR -360 195 49 182 205 26 0 chr12 83139963 83140002 -61142487 - L2 LINE L2 -9 3263 3224 6652 42 0 12 chr12 83140427 83141253 -61141236 + L1PA5 LINE L1 5339 6154 0 2638 55 0 0 chr12 83141291 83141602 -61140887 + AluY SINE Alu 1 311 0 202 358 150 17 chr12 83141609 83141729 -61140760 + MIR SINE MIR 32 167 -41 719 307 12 31 chr12 83142522 83142779 -61139710 - MLT1K LTR MaLR -55 533 282 188 312 40 64 chr12 83143242 83143367 -61139122 - MER5A DNA MER1_type -1 188 67 * 491 255 39 46 chr12 83143270 83143423 -61139066 + MER5B DNA MER1_type 27 178 0 389 290 0 0 chr12 83143943 83144036 -61138453 + L2 LINE L2 3216 3308 -5 183 278 0 19 chr12 83144120 83144174 -61138315 - MIR SINE MIR 0 262 210 204 211 39 0 chr12 83144176 83144228 -61138261 + (CATA)n Simple_repeat Simple_repeat 3 56 0 478 305 21 0 chr12 83144248 83144392 -61138097 - MIR SINE MIR -61 147 31 316 290 47 9 chr12 83144474 83144581 -61137908 + L2 LINE L2 3128 3238 -75 298 325 103 49 chr12 83144773 83145015 -61137474 + L2 LINE L2 2426 2700 -614 957 215 37 14 chr12 83145015 83145229 -61137260 + MER20 DNA MER1_type 1 219 0 298 325 103 49 chr12 83145229 83145395 -61137094 + L2 LINE L2 2700 2856 -458 468 274 9 0 chr12 83145526 83145632 -61136857 - L2 LINE L2 -6 3307 3201 207 103 0 26 chr12 83145808 83145847 -61136642 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 337 245 82 69 chr12 83146015 83146248 -61136241 - L1MC5 LINE L1 -465 7496 7261 452 291 76 8 chr12 83146370 83146607 -61135882 - L1MC5 LINE L1 -727 7234 6982 239 286 0 0 chr12 83146913 83146962 -61135527 - L2 LINE L2 -9 3263 3215 286 309 193 53 chr12 83147819 83148026 -61134463 - MIR SINE MIR -12 250 15 24 32 0 0 chr12 83148238 83148269 -61134220 + AT_rich Low_complexity Low_complexity 1 31 0 381 274 157 10 chr12 83148514 83148711 -61133778 + MER112 DNA MER1_type 4 229 -31 210 37 0 0 chr12 83149097 83149124 -61133365 + (TC)n Simple_repeat Simple_repeat 2 28 0 266 378 70 0 chr12 83149151 83149294 -61133195 + L2 LINE L2 1774 1926 -1388 200 233 0 0 chr12 83150206 83150249 -61132240 + (TAA)n Simple_repeat Simple_repeat 2 44 0 391 342 0 0 chr12 83150307 83150421 -61132068 + L2 LINE L2 3156 3269 -3 215 331 116 0 chr12 83150599 83150720 -61131769 - MIR SINE MIR -74 188 54 209 286 0 0 chr12 83150808 83150857 -61131632 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 1972 124 0 38 chr12 83152216 83152533 -61129956 - AluSx SINE Alu 0 310 5 584 285 41 36 chr12 83152726 83152947 -61129542 + MIR SINE MIR 12 233 -29 231 61 0 0 chr12 83153160 83153193 -61129296 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 29 chr12 83154070 83154085 -61128404 + AT_rich Low_complexity Low_complexity 1 15 -18 2852 3 0 3 chr12 83154085 83154397 -61128092 - AluYa5 SINE Alu 0 311 1 23 0 0 29 chr12 83154397 83154415 -61128074 + AT_rich Low_complexity Low_complexity 15 33 0 558 312 130 39 chr12 83154729 83155436 -61127053 - L2 LINE L2 0 3313 2528 207 268 70 0 chr12 83155439 83155510 -61126979 + MIR SINE MIR 115 190 -72 258 315 293 5 chr12 83156276 83156498 -61125991 - L2 LINE L2 -781 2533 2248 34 0 0 0 chr12 83157761 83157795 -61124694 + AT_rich Low_complexity Low_complexity 1 34 0 199 405 95 38 chr12 83157951 83158566 -61123923 + L2 LINE L2 2538 3192 -80 1733 270 39 29 chr12 83158628 83159110 -61123379 - MLT1G LTR MaLR 0 590 104 1963 195 73 36 chr12 83159114 83159580 -61122909 - MLT1D LTR MaLR 0 505 23 337 247 0 0 chr12 83159761 83159838 -61122651 - MLT1G LTR MaLR -488 79 3 1428 220 31 36 chr12 83160291 83160682 -61121807 + MLT1B LTR MaLR 2 390 0 1939 186 35 26 chr12 83162233 83162685 -61119804 + L1MB8 LINE L1 4873 5328 -818 31938 108 16 54 chr12 83162694 83169087 -61113402 + L1PA7 LINE L1 12 6143 -11 2605 197 49 3 chr12 83169114 83169687 -61112802 + L1MB8 LINE L1 5318 5916 -262 1483 176 10 50 chr12 83169730 83169987 -61112502 - AluJb SINE Alu -8 304 59 1962 119 39 0 chr12 83169987 83170272 -61112217 + AluSx SINE Alu 1 296 -16 1483 176 10 50 chr12 83170272 83170315 -61112174 - AluJb SINE Alu -253 59 16 979 103 0 48 chr12 83170487 83170682 -61111807 + AluSg/x SINE Alu 145 332 0 1457 181 27 40 chr12 83170948 83171247 -61111242 + AluJo SINE Alu 1 295 -17 41 36 0 0 chr12 83171303 83171358 -61111131 + AT_rich Low_complexity Low_complexity 1 55 0 186 224 0 0 chr12 83172846 83172895 -61109594 + GA-rich Low_complexity Low_complexity 2 50 0 363 303 152 28 chr12 83174453 83174664 -61107825 - MLT1J LTR MaLR -272 239 3 319 265 108 42 chr12 83176160 83176326 -61106163 - MER20B DNA MER1_type -604 179 3 21 0 0 0 chr12 83176360 83176381 -61106108 + AT_rich Low_complexity Low_complexity 1 21 0 510 305 85 72 chr12 83176709 83177252 -61105237 - L1ME3A LINE L1 -222 5948 5384 1759 174 155 11 chr12 83177252 83177626 -61104863 - MSTA LTR MaLR 0 428 1 510 305 85 72 chr12 83177626 83177739 -61104750 - L1ME3A LINE L1 -786 5384 5274 7290 174 122 17 chr12 83177765 83179353 -61103136 + MER52A LTR ERV1 1 1755 0 578 280 61 27 chr12 83179592 83179921 -61102568 - L1ME3A LINE L1 -1308 4838 4499 39 0 0 0 chr12 83180577 83180616 -61101873 + AT_rich Low_complexity Low_complexity 1 39 0 764 257 69 49 chr12 83181194 83181540 -61100949 + L1ME3 LINE L1 5802 6154 -8 552 56 0 0 chr12 83181583 83181655 -61100834 + (TC)n Simple_repeat Simple_repeat 2 73 0 1834 139 36 0 chr12 83181658 83181932 -61100557 - AluY SINE Alu -27 284 1 221 222 0 0 chr12 83182522 83182567 -61099922 + L2 LINE L2 2224 2268 -1046 2271 78 3 0 chr12 83182674 83182967 -61099522 + AluY SINE Alu 1 294 -17 23 78 0 0 chr12 83184056 83184107 -61098382 + AT_rich Low_complexity Low_complexity 1 51 0 181 336 103 19 chr12 83184240 83184347 -61098142 + L2 LINE L2 3134 3249 -23 2463 41 41 0 chr12 83184530 83184824 -61097665 + AluYa5 SINE Alu 1 306 -5 1738 261 61 52 chr12 83185083 83185833 -61096656 - L1ME3 LINE L1 0 6162 5403 2436 48 7 0 chr12 83185833 83186124 -61096365 - AluY SINE Alu -16 295 3 1738 261 61 52 chr12 83186124 83186177 -61096312 - L1ME3 LINE L1 -759 5403 5352 1269 232 71 32 chr12 83186194 83186574 -61095915 - L1MD2 LINE L1 -19 6340 5946 2529 254 80 53 chr12 83186609 83188154 -61094335 - L1ME3 LINE L1 -841 5305 3720 286 370 48 29 chr12 83188297 83188570 -61093919 + L2 LINE L2 2481 2758 -556 194 384 23 0 chr12 83188564 83188650 -61093839 + L2 LINE L2 2877 2964 -308 * 400 316 233 31 chr12 83188918 83189235 -61093254 + L3 LINE CR1 1074 1454 -123 203 288 0 15 chr12 83189295 83189361 -61093128 - MER5B DNA MER1_type -113 65 1 254 359 13 45 chr12 83189392 83189548 -61092941 - MER5A DNA MER1_type -22 167 17 * 271 385 0 8 chr12 83189420 83189550 -61092939 + MER5B DNA MER1_type 50 178 0 325 277 54 18 chr12 83189584 83189696 -61092793 + L3 LINE CR1 423 538 -1039 286 341 116 6 chr12 83189689 83189853 -61092636 + MIR SINE MIR 26 207 -55 * 24 53 0 0 chr12 83190066 83190104 -61092385 + AT_rich Low_complexity Low_complexity 1 38 0 186 123 53 0 chr12 83193335 83193392 -61089097 + (TA)n Simple_repeat Simple_repeat 2 61 0 539 282 167 0 chr12 83196474 83196630 -61085859 + MER5A DNA MER1_type 4 185 -4 757 288 23 9 chr12 83196632 83196847 -61085642 + LTR16C LTR ERVL 274 491 0 1053 203 209 18 chr12 83197655 83197985 -61084504 - MSTD LTR MaLR -3 393 1 352 277 151 8 chr12 83198089 83198208 -61084281 + MIR SINE MIR 1 136 -126 369 0 0 0 chr12 83198526 83198567 -61083922 + (CA)n Simple_repeat Simple_repeat 2 42 0 242 300 36 0 chr12 83199098 83199208 -61083281 + L1MC4 LINE L1 7924 8037 -5 491 290 37 99 chr12 83202009 83202412 -61080077 + L2 LINE L2 2690 3077 -236 24 0 0 0 chr12 83202727 83202751 -61079738 + AT_rich Low_complexity Low_complexity 1 24 0 1572 163 22 22 chr12 83203829 83204105 -61078384 - MER1B DNA MER1_type -63 276 1 2546 47 0 0 chr12 83204185 83204484 -61078005 + AluY SINE Alu 1 299 -12 1050 189 37 0 chr12 83204977 83205168 -61077321 - MER3 DNA MER1_type -2 207 10 30 69 0 0 chr12 83205434 83205492 -61076997 + AT_rich Low_complexity Low_complexity 1 58 0 438 337 61 6 chr12 83206112 83206275 -61076214 - MIR3 SINE MIR -9 199 28 1788 169 14 17 chr12 83206435 83206725 -61075764 - AluJb SINE Alu -23 289 1 221 306 83 0 chr12 83206918 83206990 -61075499 + L2 LINE L2 3195 3272 0 21 57 0 0 chr12 83207095 83207130 -61075359 + AT_rich Low_complexity Low_complexity 1 35 0 761 123 0 8 chr12 83207577 83207699 -61074790 - THE1C-int LTR MaLR -1459 121 1 2356 129 8 24 chr12 83207699 83208080 -61074409 - THE1C LTR MaLR 0 375 1 562 264 171 9 chr12 83208133 83208349 -61074140 + MIR SINE MIR 12 262 0 2072 98 7 0 chr12 83208684 83208971 -61073518 + L1PA13 LINE L1 5855 6143 -20 346 285 36 15 chr12 83209169 83209306 -61073183 + MIR SINE MIR 110 249 -13 311 304 7 7 chr12 83210020 83210158 -61072331 + (TA)n Simple_repeat Simple_repeat 2 139 0 369 75 0 0 chr12 83211565 83211618 -61070871 + (TG)n Simple_repeat Simple_repeat 2 54 0 2048 93 0 81 chr12 83211765 83212088 -61070401 - AluSc SINE Alu -12 297 1 3791 173 42 4 chr12 83213238 83213979 -61068510 + L1MA9 LINE L1 5513 6281 -31 384 280 119 12 chr12 83214399 83214567 -61067922 + MIR SINE MIR 12 197 -65 23 0 0 0 chr12 83214884 83214907 -61067582 + AT_rich Low_complexity Low_complexity 1 23 0 183 352 56 0 chr12 83215902 83215973 -61066516 - L2 LINE L2 -5 3308 3234 413 280 38 64 chr12 83216507 83216853 -61065636 - L1ME4a LINE L1 -237 5884 5548 707 138 0 0 chr12 83216884 83217000 -61065489 - L1MA10 LINE L1 -12 6322 6207 1916 166 9 81 chr12 83217100 83217573 -61064916 - L1MA10 LINE L1 -130 6204 5774 946 246 19 42 chr12 83219376 83219640 -61062849 - MIR SINE MIR 0 262 5 202 324 150 35 chr12 83219858 83220231 -61062258 - L2 LINE L2 -417 2897 2482 231 295 32 11 chr12 83220319 83220414 -61062075 - MLT1J LTR MaLR -54 457 361 654 268 60 0 chr12 83220452 83220620 -61061869 - MLT1J LTR MaLR -333 178 1 272 335 171 34 chr12 83220649 83220971 -61061518 - L2 LINE L2 -905 2409 2044 181 163 41 0 chr12 83222065 83222114 -61060375 + CT-rich Low_complexity Low_complexity 3 53 0 26 30 0 0 chr12 83222814 83222847 -61059642 + AT_rich Low_complexity Low_complexity 1 33 0 181 242 152 15 chr12 83223537 83223603 -61058886 + MIR SINE MIR 112 186 -76 1108 110 7 0 chr12 83224016 83224170 -61058319 + AluSp SINE Alu 144 298 -15 335 259 192 10 chr12 83224722 83224915 -61057574 + L2 LINE L2 3078 3305 -8 228 390 45 7 chr12 83225131 83225285 -61057204 - MLT1K LTR MaLR -290 298 139 330 337 34 67 chr12 83226052 83226230 -61056259 + L2 LINE L2 3088 3259 -13 331 336 15 8 chr12 83227106 83227237 -61055252 + MIR3 SINE MIR 4 135 -73 189 326 0 0 chr12 83227647 83227696 -61054793 + MER5B DNA MER1_type 1 49 -129 840 251 5 0 chr12 83227825 83228012 -61054477 - MER5A DNA MER1_type 0 189 2 21 0 0 0 chr12 83229389 83229410 -61053079 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr12 83229768 83229798 -61052691 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr12 83229944 83229973 -61052516 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr12 83230483 83230513 -61051976 + AT_rich Low_complexity Low_complexity 1 30 0 2800 86 5 3 chr12 83231071 83231445 -61051044 + THE1C LTR MaLR 1 375 0 450 107 0 0 chr12 83232390 83232465 -61050024 - Alu SINE Alu -3 309 235 798 160 23 0 chr12 83232492 83232623 -61049866 - MER20 DNA MER1_type -85 134 1 29 0 0 0 chr12 83232770 83232799 -61049690 + AT_rich Low_complexity Low_complexity 1 29 0 683 268 81 17 chr12 83232923 83233158 -61049331 + MIR SINE MIR 12 261 -1 203 314 10 69 chr12 83233260 83233362 -61049127 - L2 LINE L2 -224 3048 2953 2062 194 79 16 chr12 83233557 83234048 -61048441 - L1PA16 LINE L1 -1 6165 5644 372 285 0 46 chr12 83234048 83234178 -61048311 - HSMAR2 DNA Mariner -814 488 365 380 242 0 18 chr12 83234611 83234776 -61047713 + G-rich Low_complexity Low_complexity 1 162 0 307 254 30 15 chr12 83234806 83234940 -61047549 + (CGGGG)n Simple_repeat Simple_repeat 2 137 0 298 339 43 11 chr12 83235007 83235193 -61047296 + L1ME3 LINE L1 4783 4974 -1172 1269 232 71 32 chr12 83235496 83235876 -61046613 + L1MD2 LINE L1 5946 6340 -19 1702 263 65 51 chr12 83235893 83235946 -61046543 + L1ME3 LINE L1 5352 5403 -759 2436 48 7 0 chr12 83235946 83236237 -61046252 + AluY SINE Alu 3 295 -16 1702 263 65 51 chr12 83236237 83236983 -61045506 + L1ME3 LINE L1 5403 6162 0 181 310 35 0 chr12 83237121 83237179 -61045310 - L3 LINE CR1 -1294 283 224 2616 33 0 3 chr12 83237242 83237545 -61044944 - AluYa5 SINE Alu -9 302 1 548 316 136 36 chr12 83237877 83238583 -61043906 - L2 LINE L2 0 3313 2528 207 268 70 0 chr12 83238586 83238657 -61043832 + MIR SINE MIR 115 190 -72 258 315 293 5 chr12 83239423 83239645 -61042844 - L2 LINE L2 -781 2533 2248 34 0 0 0 chr12 83240908 83240942 -61041547 + AT_rich Low_complexity Low_complexity 1 34 0 199 405 95 38 chr12 83241098 83241713 -61040776 + L2 LINE L2 2538 3192 -80 1733 270 39 29 chr12 83241775 83242257 -61040232 - MLT1G LTR MaLR 0 590 104 1963 195 73 36 chr12 83242261 83242727 -61039762 - MLT1D LTR MaLR 0 505 23 337 247 0 0 chr12 83242908 83242985 -61039504 - MLT1G LTR MaLR -488 79 3 1428 220 31 36 chr12 83243438 83243829 -61038660 + MLT1B LTR MaLR 2 390 0 1911 186 38 27 chr12 83245380 83245831 -61036658 + L1MB2 LINE L1 4873 5328 -818 24532 121 19 76 chr12 83245840 83250507 -61031982 + L1P LINE L1 12 4413 -1733 1180 174 182 24 chr12 83251998 83252338 -61030151 + L1MB2 LINE L1 5769 6162 -9 186 224 0 0 chr12 83254365 83254414 -61028075 + GA-rich Low_complexity Low_complexity 2 50 0 1169 233 162 24 chr12 83254839 83255290 -61027199 + L1MA9 LINE L1 5646 6158 -154 459 270 38 50 chr12 83256164 83256323 -61026166 - MIR SINE MIR -105 157 1 240 259 196 69 chr12 83256511 83256700 -61025789 - LTR40a LTR ERVL -16 503 291 1172 132 168 0 chr12 83256949 83257146 -61025343 - MER30 DNA MER1_type 0 230 1 21 36 0 0 chr12 83257640 83257668 -61024821 + AT_rich Low_complexity Low_complexity 1 28 0 277 358 40 14 chr12 83258855 83259003 -61023486 - MER5A DNA MER1_type -34 155 4 221 228 25 63 chr12 83259003 83259064 -61023425 - MIR3 SINE MIR -52 156 99 417 308 53 0 chr12 83259337 83259470 -61023019 - MLT1L LTR MaLR -357 258 119 300 304 43 118 chr12 83259845 83259968 -61022521 - L2 LINE L2 -32 3240 3109 1031 179 111 98 chr12 83259968 83260336 -61022153 - MLT1A2 LTR MaLR 0 374 2 300 304 43 118 chr12 83260336 83260534 -61021955 - L2 LINE L2 -163 3109 2943 570 350 40 12 chr12 83260703 83261032 -61021457 - L2 LINE L2 -576 2738 2401 21 57 0 0 chr12 83261445 83261480 -61021009 + AT_rich Low_complexity Low_complexity 1 35 0 1156 302 44 24 chr12 83261485 83261936 -61020553 + L1PB4 LINE L1 13 472 -6377 12540 206 19 10 chr12 83261971 83264327 -61018162 + L1PB4 LINE L1 3030 5431 -1427 213 39 0 0 chr12 83264327 83264353 -61018136 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 12540 206 19 10 chr12 83264353 83265781 -61016708 + L1PB4 LINE L1 5431 6844 -14 189 154 0 0 chr12 83266644 83266683 -61015806 + T-rich Low_complexity Low_complexity 1 39 0 2677 239 70 41 chr12 83267169 83267942 -61014547 - MER21B LTR ERV1 -51 812 18 318 306 55 17 chr12 83267967 83268109 -61014380 - MLT1I LTR MaLR -38 408 243 667 270 56 15 chr12 83268769 83268965 -61013524 + MIR SINE MIR 34 237 -25 22 35 0 0 chr12 83268978 83269007 -61013482 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr12 83271583 83271608 -61010881 + AT_rich Low_complexity Low_complexity 1 25 0 399 204 129 20 chr12 83271755 83271902 -61010587 + L1MC5 LINE L1 7749 7911 -50 215 325 18 35 chr12 83274613 83274782 -61007707 + CT-rich Low_complexity Low_complexity 3 168 0 733 328 62 19 chr12 83275454 83275774 -61006715 - MLT1J LTR MaLR -79 432 99 363 303 152 28 chr12 83276873 83277084 -61005405 - MLT1J LTR MaLR -272 239 3 292 271 108 42 chr12 83278580 83278746 -61003743 - MER20B DNA MER1_type -604 179 3 21 0 0 0 chr12 83278780 83278801 -61003688 + AT_rich Low_complexity Low_complexity 1 21 0 498 313 103 45 chr12 83279129 83279672 -61002817 - L1ME3A LINE L1 -222 5948 5369 1773 171 155 11 chr12 83279672 83280046 -61002443 - MSTA LTR MaLR 0 428 1 498 313 103 45 chr12 83280046 83280077 -61002412 - L1ME3A LINE L1 -801 5369 5341 7261 176 122 17 chr12 83280185 83281773 -61000716 + MER52A LTR ERV1 1 1755 0 582 274 61 33 chr12 83282012 83282341 -61000148 - L1ME3A LINE L1 -1310 4836 4499 39 0 0 0 chr12 83282997 83283036 -60999453 + AT_rich Low_complexity Low_complexity 1 39 0 780 254 69 49 chr12 83283614 83283960 -60998529 + L1ME3 LINE L1 5802 6154 -8 489 62 0 0 chr12 83284003 83284068 -60998421 + (TC)n Simple_repeat Simple_repeat 1 65 0 1819 144 36 0 chr12 83284068 83284346 -60998143 - AluY SINE Alu -23 288 1 221 222 0 0 chr12 83284937 83284982 -60997507 + L2 LINE L2 2224 2268 -1046 2258 78 3 0 chr12 83285089 83285382 -60997107 + AluY SINE Alu 1 294 -17 23 78 0 0 chr12 83286471 83286522 -60995967 + AT_rich Low_complexity Low_complexity 1 51 0 181 336 103 19 chr12 83286655 83286762 -60995727 + L2 LINE L2 3134 3249 -23 2164 123 3 0 chr12 83286945 83287246 -60995243 + AluSx SINE Alu 1 302 -10 602 241 0 0 chr12 83287249 83287357 -60995132 - FLAM_A SINE Alu -34 108 1 717 327 16 12 chr12 83287690 83287947 -60994542 - MIR SINE MIR 0 262 5 3088 42 7 32 chr12 83288041 83288183 -60994306 + L1P3 LINE L1 5351 5495 -659 1999 116 3 10 chr12 83288183 83288486 -60994003 + AluY SINE Alu 1 301 -10 3088 42 7 32 chr12 83288486 83288750 -60993739 + L1P3 LINE L1 5495 5747 -407 2118 126 3 0 chr12 83289212 83289506 -60992983 - AluSx SINE Alu -17 295 1 290 254 0 27 chr12 83290052 83290237 -60992252 + C-rich Low_complexity Low_complexity 1 180 0 980 116 68 43 chr12 83290402 83290514 -60991975 - HSMAR2 DNA Mariner -1090 212 91 2019 97 8 4 chr12 83290514 83290781 -60991708 + AluSq SINE Alu 1 268 -45 980 116 68 43 chr12 83290781 83290875 -60991614 - HSMAR2 DNA Mariner -1211 91 1 387 267 113 13 chr12 83290922 83291075 -60991414 - MIR SINE MIR -65 143 16 207 139 0 0 chr12 83291106 83291142 -60991347 + (CA)n Simple_repeat Simple_repeat 2 37 0 283 149 0 0 chr12 83291594 83291641 -60990848 - HSMAR2 DNA Mariner -1255 47 1 387 267 113 13 chr12 83291688 83291841 -60990648 - MIR SINE MIR -65 143 16 228 111 0 0 chr12 83291872 83291908 -60990581 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr12 83292311 83292333 -60990156 + AT_rich Low_complexity Low_complexity 1 22 0 2149 248 44 9 chr12 83292381 83292659 -60989830 + MLT1F LTR MaLR 1 268 -274 3235 163 24 14 chr12 83292659 83293253 -60989236 - LTR26 LTR ERV1 -3 600 1 2149 248 44 9 chr12 83293253 83293498 -60988991 + MLT1F LTR MaLR 268 542 0 183 42 0 0 chr12 83295036 83295060 -60987429 + (CA)n Simple_repeat Simple_repeat 1 24 0 365 206 238 38 chr12 83295316 83295476 -60987013 + MIR SINE MIR 60 251 -11 2118 126 3 0 chr12 83295622 83295916 -60986573 - AluSx SINE Alu -17 295 1 2275 98 3 3 chr12 83296626 83296931 -60985558 - AluSc SINE Alu -4 305 1 2446 78 0 0 chr12 83297305 83297612 -60984877 - AluY SINE Alu -4 307 1 252 0 0 0 chr12 83297688 83297716 -60984773 + (T)n Simple_repeat Simple_repeat 1 28 0 32 98 0 0 chr12 83298328 83298430 -60984059 + AT_rich Low_complexity Low_complexity 1 102 0 787 319 184 11 chr12 83299102 83299843 -60982646 - L2 LINE L2 0 3313 2447 796 128 45 0 chr12 83300099 83300232 -60982257 + L1PA11 LINE L1 6031 6169 -5 344 275 69 30 chr12 83300339 83300470 -60982019 - L1M LINE L1 -2403 5405 5270 6979 184 28 22 chr12 83300705 83302435 -60980054 + L1M2 LINE L1 1340 3078 -3770 1009 204 107 3 chr12 83302456 83302764 -60979725 + L1M2 LINE L1 3854 4193 -2655 3900 147 49 0 chr12 83302764 83303452 -60979037 + L1MA4 LINE L1 5573 6294 -6 1741 145 0 57 chr12 83303759 83304076 -60978413 + AluJb SINE Alu 3 301 -11 190 286 18 0 chr12 83304593 83304649 -60977840 - L2 LINE L2 -6 3307 3251 254 261 14 0 chr12 83306865 83306934 -60975555 + MER116 DNA Mariner 9 78 -2 21 36 0 0 chr12 83307405 83307433 -60975056 + AT_rich Low_complexity Low_complexity 1 28 0 2211 111 30 25 chr12 83307441 83307803 -60974686 - THE1B LTR MaLR 0 364 1 249 333 11 0 chr12 83308258 83308351 -60974138 - MIR SINE MIR -31 231 138 450 304 79 32 chr12 83308966 83309246 -60973243 - L1 LINE L1 -1519 4627 4335 191 231 26 0 chr12 83309347 83309386 -60973103 + L2 LINE L2 3213 3252 -20 22 70 0 0 chr12 83309896 83309939 -60972550 + AT_rich Low_complexity Low_complexity 1 43 0 198 0 0 0 chr12 83310063 83310085 -60972404 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2024 143 3 0 chr12 83310105 83310406 -60972083 + AluSx SINE Alu 1 302 -10 592 241 0 0 chr12 83310409 83310517 -60971972 - FLAM_A SINE Alu -34 108 1 729 327 16 12 chr12 83310850 83311107 -60971382 - MIR SINE MIR 0 262 5 6207 56 7 15 chr12 83311201 83311342 -60971147 + L1PA7 LINE L1 5351 5492 -662 2002 121 3 3 chr12 83311342 83311640 -60970849 + AluY SINE Alu 1 298 -13 6207 56 7 15 chr12 83311640 83312308 -60970181 + L1PA7 LINE L1 5492 6154 0 756 273 78 0 chr12 83312655 83312860 -60969629 - MIR SINE MIR -19 243 23 21 0 0 0 chr12 83314340 83314361 -60968128 + AT_rich Low_complexity Low_complexity 1 21 0 319 254 119 24 chr12 83314398 83314524 -60967965 - L2 LINE L2 -1 3312 3175 514 281 23 47 chr12 83314551 83314722 -60967767 + L2 LINE L2 3110 3276 -37 195 42 0 0 chr12 83315395 83315419 -60967070 + (GA)n Simple_repeat Simple_repeat 2 25 0 814 217 24 17 chr12 83315520 83315751 -60966738 - L1MA9 LINE L1 -125 6064 5830 553 179 71 7 chr12 83315763 83315903 -60966586 + L1MA9 LINE L1 6050 6198 -114 758 207 30 24 chr12 83315934 83316310 -60966179 - LTR56 LTR ERV1 0 445 1 1148 249 27 67 chr12 83316382 83316787 -60965702 - LTR56-int LTR ERV1 -91 5032 4644 22 35 0 0 chr12 83317423 83317452 -60965037 + AT_rich Low_complexity Low_complexity 1 29 0 264 322 57 57 chr12 83317536 83317834 -60964655 - LTR49-int LTR ERV1 -2096 2551 2254 1009 193 0 37 chr12 83317899 83318142 -60964347 - LTR49-int LTR ERV1 -3724 4396 4163 427 246 36 74 chr12 83318212 83318498 -60963991 - LTR49-int LTR ERV1 -1954 2926 1566 * 826 225 55 51 chr12 83318466 83318804 -60963685 - LTR49-int LTR ERV1 -2959 3129 2794 944 223 36 22 chr12 83318804 83319078 -60963411 - LTR57-int LTR ERVL -3832 1511 1234 826 225 55 51 chr12 83319078 83319229 -60963260 - LTR49-int LTR ERV1 -3294 2794 1150 1599 248 61 54 chr12 83319256 83319813 -60962676 - LTR49-int LTR ERV1 -4240 2091 1531 225 0 0 0 chr12 83320673 83320698 -60961791 + (A)n Simple_repeat Simple_repeat 1 25 0 274 143 0 0 chr12 83320698 83320747 -60961742 - LTR49-int LTR ERV1 -4726 1605 1557 232 132 0 0 chr12 83321183 83321221 -60961268 - L1MA9 LINE L1 -39 6273 6236 392 130 87 0 chr12 83321889 83321958 -60960531 + L1MA9 LINE L1 6200 6274 -38 332 151 0 139 chr12 83322063 83322149 -60960340 + MER116 DNA Mariner 2 75 -5 215 284 0 11 chr12 83322150 83322245 -60960244 + (CATATA)n Simple_repeat Simple_repeat 4 97 0 280 216 27 27 chr12 83322292 83322366 -60960123 + L1ME LINE L1 5726 5799 -363 295 257 0 54 chr12 83324321 83324395 -60958094 - L2 LINE L2 0 3313 3244 258 320 133 0 chr12 83327212 83327340 -60955149 + MIR SINE MIR 102 246 -16 * 409 291 68 14 chr12 83327338 83327486 -60955003 - MIR SINE MIR -105 157 2 182 384 0 0 chr12 83328004 83328077 -60954412 + L3 LINE CR1 322 394 -1183 361 214 143 0 chr12 83328166 83328278 -60954211 + MER103 DNA DNA 8 135 -31 349 302 57 0 chr12 83328371 83328477 -60954012 + L2 LINE L2 3161 3272 0 270 326 15 0 chr12 83328893 83329028 -60953461 + (TA)n Simple_repeat Simple_repeat 1 137 0 44078 36 3 1 chr12 83329112 83335259 -60947230 + L1PA3 LINE L1 1 6155 0 222 262 16 0 chr12 83335741 83335802 -60946687 + (TA)n Simple_repeat Simple_repeat 1 62 0 3030 223 80 39 chr12 83335805 83337354 -60945135 - L1ME1 LINE L1 -76 6090 4463 387 0 0 0 chr12 83337354 83337397 -60945092 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3030 223 80 39 chr12 83337397 83337634 -60944855 - L1ME1 LINE L1 -1703 4463 4237 2261 113 3 0 chr12 83338646 83338956 -60943533 - AluSp SINE Alu -2 311 1 201 211 0 0 chr12 83338992 83339049 -60943440 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 200 271 0 0 chr12 83339059 83339107 -60943382 + MIR SINE MIR 215 262 0 23 0 0 0 chr12 83339307 83339330 -60943159 + AT_rich Low_complexity Low_complexity 1 23 0 478 202 101 0 chr12 83340049 83340168 -60942321 - FLAM_A SINE Alu -2 131 1 291 241 179 48 chr12 83340772 83340917 -60941572 - MIR SINE MIR -16 246 83 244 255 0 0 chr12 83341462 83341513 -60940976 + L2 LINE L2 3263 3313 0 1141 146 5 0 chr12 83342255 83342447 -60940042 + L1PB1 LINE L1 3 195 -6668 * 9957 105 51 32 chr12 83342432 83345041 -60937448 + L1PB1 LINE L1 620 3416 -3446 9199 193 35 13 chr12 83345033 83347667 -60934822 + L1PB1 LINE L1 3804 6502 -365 * 213 39 0 0 chr12 83347667 83347693 -60934796 + (TG)n Simple_repeat Simple_repeat 2 27 0 228 53 0 105 chr12 83347696 83347734 -60934755 - L1P5 LINE L1 -337 5814 5781 * 1272 93 119 0 chr12 83347751 83347944 -60934545 + L1PB1 LINE L1 6651 6866 -1 1661 175 14 24 chr12 83349517 83349814 -60932675 - AluJb SINE Alu -16 296 3 504 330 134 23 chr12 83349872 83350223 -60932266 - L2 LINE L2 0 3313 2924 1279 211 64 53 chr12 83350336 83350729 -60931760 - MLT2C1 LTR ERVL 0 397 1 1432 80 0 15 chr12 83351202 83351403 -60931086 - L1PA8 LINE L1 0 6172 5975 814 40 8 65 chr12 83351692 83351816 -60930673 - L1PA8 LINE L1 0 6172 6056 408 74 0 0 chr12 83351818 83351872 -60930617 + L1PA8 LINE L1 6005 6058 -114 651 156 31 39 chr12 83352521 83352649 -60929840 + MER45A DNA AcHobo 51 177 -1 549 261 111 26 chr12 83352652 83352852 -60929637 + MIR SINE MIR 41 254 -8 24 32 0 0 chr12 83353224 83353255 -60929234 + AT_rich Low_complexity Low_complexity 1 31 0 397 322 146 34 chr12 83354436 83355047 -60927442 - L2 LINE L2 -785 2529 1851 317 240 30 20 chr12 83356800 83356900 -60925589 - L1ME2 LINE L1 -13 6151 6051 5115 155 11 36 chr12 83356983 83358770 -60923719 - L1MA8 LINE L1 -3 6288 4539 2563 197 85 17 chr12 83358785 83359509 -60922980 - L1ME2 LINE L1 -213 5951 5192 360 230 160 0 chr12 83359524 83359624 -60922865 - AluJo SINE Alu -1 301 186 793 181 0 0 chr12 83359624 83359757 -60922732 - AluJo SINE Alu -169 133 1 1006 247 112 21 chr12 83359759 83360232 -60922257 - L1ME2 LINE L1 -945 5201 4686 399 113 0 0 chr12 83360595 83360657 -60921832 + (CA)n Simple_repeat Simple_repeat 2 63 0 1579 140 0 4 chr12 83361288 83361524 -60920965 - AluSx SINE Alu -73 239 5 300 154 0 0 chr12 83361531 83361583 -60920906 + T-rich Low_complexity Low_complexity 1 52 0 396 211 75 45 chr12 83361780 83361913 -60920576 - MIR SINE MIR -109 153 17 375 289 20 0 chr12 83363063 83363215 -60919274 - Charlie2 DNA MER1_type -121 2741 2587 211 368 157 0 chr12 83363705 83363871 -60918618 + L2 LINE L2 2225 2416 -898 259 374 99 14 chr12 83363981 83364192 -60918297 + L2 LINE L2 2577 2805 -509 389 221 107 29 chr12 83364478 83364663 -60917826 + MLT1H LTR MaLR 356 549 0 433 293 44 0 chr12 83366519 83366724 -60915765 - Charlie2 DNA MER1_type -121 2741 2528 21 0 0 0 chr12 83366752 83366773 -60915716 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 83367068 83367089 -60915400 + AT_rich Low_complexity Low_complexity 1 21 0 385 357 34 67 chr12 83367177 83367415 -60915074 + L2 LINE L2 3034 3263 -9 21 0 0 0 chr12 83368722 83368743 -60913746 + AT_rich Low_complexity Low_complexity 1 21 0 186 363 128 0 chr12 83368996 83369098 -60913391 - MER5A DNA MER1_type -22 167 53 282 290 76 48 chr12 83369452 83369597 -60912892 + MIR SINE MIR 2 150 -112 21 36 0 0 chr12 83369628 83369656 -60912833 + AT_rich Low_complexity Low_complexity 1 28 0 273 197 0 28 chr12 83370276 83370347 -60912142 + L1MC4 LINE L1 6639 6707 -1335 329 266 55 37 chr12 83370760 83370869 -60911620 - MIR SINE MIR -138 124 14 186 231 19 39 chr12 83371020 83371072 -60911417 + MER5B DNA MER1_type 122 172 -6 336 347 17 0 chr12 83371303 83371432 -60911057 + MIR SINE MIR 21 150 -65 414 349 89 89 chr12 83371737 83372084 -60910405 - L2 LINE L2 -81 3191 2845 2110 88 3 39 chr12 83373153 83373460 -60909029 + AluSc SINE Alu 1 296 -13 459 293 8 0 chr12 83373639 83373762 -60908727 - MER31B LTR ERV1 -8 458 335 190 322 51 0 chr12 83373961 83374020 -60908469 - MIR SINE MIR 0 262 201 2447 169 15 6 chr12 83374057 83374530 -60907959 - L1 LINE L1 -927 5288 4812 1775 284 89 9 chr12 83375088 83375637 -60906852 + MLT1E LTR MaLR 1 593 0 443 304 65 7 chr12 83376323 83376461 -60906028 + MIR SINE MIR 8 153 -109 394 312 65 19 chr12 83376808 83376962 -60905527 - L2 LINE L2 -211 3061 2901 255 279 29 0 chr12 83377057 83377125 -60905364 - L2 LINE L2 -818 2496 2427 2149 240 49 38 chr12 83378339 83378914 -60903575 - MLT1G LTR MaLR 0 590 10 2712 248 55 42 chr12 83379401 83381999 -60900490 - L1MEc LINE L1 -1903 4312 1639 2321 246 41 2 chr12 83382022 83382653 -60899836 - L1ME1 LINE L1 -5 6161 5506 211 200 0 0 chr12 83383239 83383279 -60899210 + (TG)n Simple_repeat Simple_repeat 1 40 0 1843 146 56 3 chr12 83384122 83384409 -60898080 + AluSx SINE Alu 1 302 -10 2216 95 7 3 chr12 83385575 83385880 -60896609 + AluSc SINE Alu 1 306 -3 1160 237 12 4 chr12 83386011 83386256 -60896233 + Tigger7 DNA MER2_type 2 248 -2239 * 1841 127 58 55 chr12 83386241 83386603 -60895886 + Tigger7 DNA MER2_type 2222 2584 -3 1086 97 0 0 chr12 83386795 83386939 -60895550 - AluSp SINE Alu -129 184 41 343 403 16 43 chr12 83387573 83387759 -60894730 + MER91A DNA MER1_type 3 183 -13 2089 128 3 3 chr12 83388264 83388568 -60893921 - AluSp SINE Alu -9 304 1 191 36 36 0 chr12 83389454 83389482 -60893007 + (TA)n Simple_repeat Simple_repeat 2 30 0 393 86 0 0 chr12 83390003 83390061 -60892428 + (TA)n Simple_repeat Simple_repeat 2 59 0 330 214 86 0 chr12 83390488 83390558 -60891931 - MIR SINE MIR -138 124 49 1843 146 56 3 chr12 83390977 83391264 -60891225 + AluSx SINE Alu 1 302 -10 2461 45 6 10 chr12 83392430 83392742 -60889747 + AluY SINE Alu 1 311 0 10053 39 8 1 chr12 83392909 83394923 -60887566 - L1PA5 LINE L1 0 6154 4123 2996 36 0 0 chr12 83394923 83395280 -60887209 + L1PA5 LINE L1 3778 4134 -2012 227 281 174 0 chr12 83395439 83395560 -60886929 - MIR SINE MIR -79 183 42 263 274 0 32 chr12 83395615 83395677 -60886812 + L2 LINE L2 3201 3260 -12 27 73 0 0 chr12 83396722 83396777 -60885712 + AT_rich Low_complexity Low_complexity 1 55 0 230 309 118 22 chr12 83399610 83399746 -60882743 + MIR SINE MIR 12 160 -102 209 321 107 0 chr12 83402602 83402714 -60879775 + MIR SINE MIR 103 226 -36 7515 206 70 14 chr12 83402945 83404493 -60877996 - L1MB1 LINE L1 0 5992 4532 2113 120 10 0 chr12 83404493 83404785 -60877704 - AluSp SINE Alu -16 297 3 7515 206 70 14 chr12 83404785 83406043 -60876446 - L1MB1 LINE L1 -1460 4532 3043 533 264 73 6 chr12 83406034 83406212 -60876277 - L1MB1 LINE L1 -5045 856 667 * 860 294 166 24 chr12 83406349 83406726 -60875763 - L1MB1 LINE L1 -5232 659 2 213 391 0 0 chr12 83409295 83409364 -60873125 - L2 LINE L2 -34 3238 3170 225 0 0 0 chr12 83409586 83409611 -60872878 + (T)n Simple_repeat Simple_repeat 1 25 0 219 293 138 8 chr12 83409854 83409977 -60872512 + MIR SINE MIR 124 262 0 1646 217 59 27 chr12 83411506 83411995 -60870494 - MLT1D LTR MaLR 0 505 1 202 397 38 8 chr12 83412185 83412316 -60870173 - L2 LINE L2 -1 3271 3137 214 342 72 9 chr12 83412433 83412544 -60869945 - L2 LINE L2 -212 3060 2943 462 360 67 33 chr12 83412593 83412982 -60869507 - L2 LINE L2 -356 2958 2557 212 282 72 44 chr12 83412992 83413173 -60869316 - L2 LINE L2 -898 2416 2231 212 204 0 0 chr12 83413386 83413435 -60869054 - L2 LINE L2 -300 2972 2924 611 247 111 0 chr12 83413501 83413663 -60868826 - MIR SINE MIR -43 219 40 452 159 0 0 chr12 83414570 83414639 -60867850 - MER8 DNA MER2_type -1 238 170 * 2493 133 57 14 chr12 83414636 83415057 -60867432 + Tigger2 DNA MER2_type 2280 2718 0 216 329 13 13 chr12 83415117 83415196 -60867293 - L2 LINE L2 -1390 1924 1846 1568 274 125 93 chr12 83415225 83417622 -60864867 + HAL1 LINE L1 10 2483 -24 31 0 0 0 chr12 83417630 83417661 -60864828 + AT_rich Low_complexity Low_complexity 1 31 0 208 143 0 61 chr12 83417857 83417906 -60864583 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 540 360 40 8 chr12 83418375 83418628 -60863861 - MIR SINE MIR 0 262 2 208 315 153 79 chr12 83418682 83419622 -60862867 - L2 LINE L2 -353 2961 1952 189 0 0 0 chr12 83419667 83419688 -60862801 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr12 83420475 83420498 -60861991 + AT_rich Low_complexity Low_complexity 1 23 0 380 179 141 64 chr12 83422133 83422318 -60860171 - MLT1H LTR MaLR 0 549 356 248 379 99 14 chr12 83422604 83422815 -60859674 - L2 LINE L2 -509 2805 2577 198 376 26 0 chr12 83422974 83423091 -60859398 - L2 LINE L2 -971 2343 2224 276 288 0 27 chr12 83423303 83423376 -60859113 - MER5B DNA MER1_type -106 72 2 632 206 89 0 chr12 83424133 83424279 -60858210 + MIR SINE MIR 103 261 -1 202 189 0 0 chr12 83424375 83424412 -60858077 + (CA)n Simple_repeat Simple_repeat 1 37 0 232 262 250 0 chr12 83424413 83424497 -60857992 + L1ME3A LINE L1 6055 6159 -11 603 263 82 59 chr12 83424525 83424559 -60857930 + MIR SINE MIR 2 34 -228 2541 39 3 7 chr12 83424559 83424869 -60857620 + AluY SINE Alu 1 309 -2 603 263 82 59 chr12 83424869 83425089 -60857400 + MIR SINE MIR 34 262 0 27 29 0 0 chr12 83425761 83425795 -60856694 + AT_rich Low_complexity Low_complexity 1 34 0 239 289 79 75 chr12 83426591 83426844 -60855645 + L3 LINE CR1 1274 1527 -50 324 143 0 0 chr12 83426958 83427014 -60855475 + (A)n Simple_repeat Simple_repeat 1 56 0 274 308 112 27 chr12 83427322 83427582 -60854907 - HAL1b LINE L1 -622 726 445 4301 141 40 8 chr12 83428194 83428925 -60853564 + Tigger2 DNA MER2_type 4 757 -1961 1384 157 44 8 chr12 83428974 83429223 -60853266 + Tigger2 DNA MER2_type 2461 2718 0 1250 226 15 18 chr12 83429226 83429558 -60852931 + L1ME1 LINE L1 5593 5923 -243 1319 225 52 30 chr12 83429777 83430182 -60852307 + L1M4 LINE L1 4517 4930 -1216 564 221 59 7 chr12 83432002 83432138 -60850351 - MER58B DNA MER1_type 0 341 199 203 217 22 0 chr12 83432294 83432340 -60850149 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 677 46 26 0 chr12 83433011 83433117 -60849372 - L1P LINE L1 -757 5409 5298 6301 37 0 0 chr12 83433117 83433870 -60848619 + L1PA4 LINE L1 5401 6154 -1 2715 168 62 12 chr12 83434294 83434855 -60847634 + L1MA9 LINE L1 5724 6312 0 764 316 98 42 chr12 83435150 83435672 -60846817 + L3 LINE CR1 598 1148 -429 2241 113 0 0 chr12 83435896 83436196 -60846293 + AluY SINE Alu 1 300 -11 1032 190 0 0 chr12 83436221 83436395 -60846094 + FAM SINE Alu 1 49 0 2449 101 33 6 chr12 83437177 83437542 -60844947 + THE1C LTR MaLR 1 375 0 638 240 117 6 chr12 83438427 83438598 -60843891 + MIR SINE MIR 39 228 -34 737 149 7 7 chr12 83441263 83441546 -60840943 + CT-rich Low_complexity Low_complexity 1 283 0 764 208 0 7 chr12 83441582 83441731 -60840758 - AluJb SINE Alu -4 308 161 317 298 119 18 chr12 83441848 83442016 -60840473 + MIR SINE MIR 23 207 -55 212 179 0 0 chr12 83442051 83442090 -60840399 + (TTA)n Simple_repeat Simple_repeat 1 39 0 698 273 77 68 chr12 83442907 83443244 -60839245 - MLT1I LTR MaLR -69 340 1 317 292 127 26 chr12 83443519 83443720 -60838769 + MIR SINE MIR 18 236 -26 741 345 101 11 chr12 83443730 83444282 -60838207 + L2 LINE L2 2709 3312 -1 532 239 151 0 chr12 83444777 83444936 -60837553 - MER33 DNA MER1_type -141 183 1 308 238 159 40 chr12 83444957 83445083 -60837406 - L1ME LINE L1 -587 5534 5394 277 324 190 6 chr12 83445087 83445266 -60837223 - MIR SINE MIR -4 258 47 1801 139 38 14 chr12 83446922 83447209 -60835280 - AluSx SINE Alu -18 294 1 6946 67 0 1 chr12 83447337 83448299 -60834190 + L1PA7 LINE L1 5193 6154 0 1322 105 0 0 chr12 83448307 83448478 -60834011 + AluSc SINE Alu 127 297 -12 315 0 0 0 chr12 83448582 83448617 -60833872 + (TTG)n Simple_repeat Simple_repeat 2 36 0 196 292 67 0 chr12 83449883 83449972 -60832517 - L3 LINE CR1 -306 1271 1177 274 306 28 28 chr12 83452469 83452577 -60829912 + MIR3 SINE MIR 95 202 -6 2289 100 10 3 chr12 83452599 83452909 -60829580 - AluSx SINE Alu 0 312 1 283 302 48 8 chr12 83453004 83453130 -60829359 + MIR SINE MIR 78 208 -54 7171 191 140 35 chr12 83453168 83454757 -60827732 - MER52A LTR ERV1 0 1755 1 733 312 40 8 chr12 83454820 83455070 -60827419 - MIR SINE MIR 0 262 5 22 0 0 0 chr12 83455687 83455709 -60826780 + AT_rich Low_complexity Low_complexity 1 22 0 212 319 14 0 chr12 83455934 83456006 -60826483 - L2 LINE L2 -1006 2308 2236 7573 28 2 0 chr12 83456542 83457783 -60824706 + L1PA4 LINE L1 4913 6155 0 489 335 97 0 chr12 83457872 83458078 -60824411 - MIR SINE MIR 0 262 37 23 0 0 0 chr12 83458244 83458267 -60824222 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 83458432 83458456 -60824033 + AT_rich Low_complexity Low_complexity 1 24 0 437 293 8 74 chr12 83459303 83459559 -60822930 - L2 LINE L2 -18 3295 3057 304 279 97 75 chr12 83461844 83462070 -60820419 - MIR SINE MIR 0 262 32 306 250 152 24 chr12 83462448 83462612 -60819877 + MIR SINE MIR 65 249 -13 350 226 11 32 chr12 83462947 83462974 -60819515 + L1MC4 LINE L1 6612 6638 -1404 1936 127 21 11 chr12 83462974 83463257 -60819232 + AluSx SINE Alu 1 286 -26 350 226 11 32 chr12 83463257 83463322 -60819167 + L1MC4 LINE L1 6638 6702 -1340 2838 240 17 6 chr12 83463339 83463973 -60818516 + MER82 DNA MER2_type 11 651 -2 12280 118 8 27 chr12 83466131 83468279 -60814210 + L1PA7 LINE L1 11 2146 -4315 2347 75 0 0 chr12 83468279 83468588 -60813901 - AluY SINE Alu 0 309 1 12280 118 8 27 chr12 83468588 83468656 -60813833 + L1PA7 LINE L1 2146 2214 -4247 21349 99 8 5 chr12 83468657 83470201 -60812288 + L1PA7 LINE L1 2561 4098 -2371 2110 124 3 0 chr12 83470201 83470492 -60811997 + AluSg SINE Alu 1 292 -18 21349 99 8 5 chr12 83470492 83472857 -60809632 + L1PA7 LINE L1 4098 6465 -4 1867 160 13 0 chr12 83472976 83473282 -60809207 - AluSx SINE Alu -2 310 1 333 316 0 26 chr12 83473723 83473875 -60808614 + GA-rich Low_complexity Low_complexity 2 149 0 490 347 84 25 chr12 83474041 83474444 -60808045 - L3 LINE CR1 -6 1571 1145 206 159 23 0 chr12 83479728 83479772 -60802717 + (CA)n Simple_repeat Simple_repeat 1 45 0 643 230 75 6 chr12 83481289 83481463 -60801026 - MER5A DNA MER1_type -2 187 2 990 218 33 0 chr12 83481474 83481685 -60800804 + MER20 DNA MER1_type 2 219 0 601 341 41 16 chr12 83481694 83482011 -60800478 - MLT1I LTR MaLR -22 387 63 547 303 147 86 chr12 83483633 83483899 -60798590 - MLT1K LTR MaLR -45 543 295 3343 11 0 0 chr12 83483899 83484278 -60798211 - L1PA2 LINE L1 -6 6149 5771 547 303 147 86 chr12 83484278 83484513 -60797976 - MLT1K LTR MaLR -293 295 11 15802 135 38 12 chr12 83485599 83487809 -60794680 - Tigger4(Zombi) DNA MER2_type 0 2731 440 285 51 0 0 chr12 83487809 83487848 -60794641 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 15802 135 38 12 chr12 83487848 83488300 -60794189 - Tigger4(Zombi) DNA MER2_type -2291 440 1 1454 207 3 30 chr12 83488337 83488637 -60793852 - AluJo SINE Alu -20 292 1 3435 274 174 37 chr12 83489309 83489795 -60792694 - L2 LINE L2 -818 2496 2078 2080 161 46 55 chr12 83489795 83490167 -60792322 - MSTB1 LTR MaLR 0 432 63 2199 132 0 0 chr12 83490167 83490477 -60792012 - AluSg SINE Alu 0 310 1 2080 161 46 55 chr12 83490477 83490540 -60791949 - MSTB1 LTR MaLR -369 63 1 3435 274 174 37 chr12 83490540 83490796 -60791693 - L2 LINE L2 -1236 2078 1859 2260 93 7 0 chr12 83490796 83491098 -60791391 - AluY SINE Alu -7 304 1 3435 274 174 37 chr12 83491098 83492022 -60790467 - L2 LINE L2 -1455 1859 600 29 0 0 0 chr12 83493122 83493151 -60789338 + AT_rich Low_complexity Low_complexity 1 29 0 37 69 0 0 chr12 83494415 83494487 -60788002 + AT_rich Low_complexity Low_complexity 1 72 0 276 345 92 10 chr12 83495432 83495638 -60786851 + L2 LINE L2 1899 2121 -1193 476 340 25 17 chr12 83495712 83495950 -60786539 + L2 LINE L2 2148 2387 -927 200 359 13 0 chr12 83496386 83496464 -60786025 + L2 LINE L2 3194 3272 0 360 268 72 59 chr12 83496550 83496703 -60785786 + MIR SINE MIR 46 200 -62 628 237 0 0 chr12 83498338 83498473 -60784016 - AluJb SINE Alu -7 305 171 429 336 128 9 chr12 83498576 83498787 -60783702 - MIR SINE MIR -15 247 12 649 237 80 50 chr12 83499319 83500534 -60781955 + L1MD3 LINE L1 6462 7814 -181 349 216 0 0 chr12 83500542 83500616 -60781873 + L1MC4 LINE L1 7963 8036 -6 21 0 0 0 chr12 83501675 83501696 -60780793 + AT_rich Low_complexity Low_complexity 1 21 0 216 271 34 0 chr12 83502118 83502177 -60780312 + (CATA)n Simple_repeat Simple_repeat 4 64 0 234 335 81 37 chr12 83502237 83502398 -60780091 + L2 LINE L2 2869 3036 -236 283 364 37 16 chr12 83502834 83503021 -60779468 - L2 LINE L2 -5 3308 3118 454 305 73 62 chr12 83503294 83503648 -60778841 - L2 LINE L2 -488 2826 2469 1772 146 35 45 chr12 83503692 83504069 -60778420 + THE1C LTR MaLR 3 375 0 311 368 22 7 chr12 83504527 83504663 -60777826 - L3 LINE CR1 -66 1511 1374 200 173 19 19 chr12 83505016 83505068 -60777421 + (TA)n Simple_repeat Simple_repeat 1 52 0 307 339 28 34 chr12 83505221 83505398 -60777091 + MIR SINE MIR 75 250 -12 204 186 0 23 chr12 83505466 83505509 -60776980 + L3 LINE CR1 1479 1520 -57 836 160 0 0 chr12 83505724 83505855 -60776634 - AluJo SINE Alu -176 136 6 208 310 52 52 chr12 83505906 83506061 -60776428 - MIR SINE MIR 0 262 108 600 283 52 21 chr12 83506064 83506255 -60776234 - MIR SINE MIR -24 238 42 744 82 52 45 chr12 83506321 83506455 -60776034 - AluSp/q SINE Alu -3 310 176 26 64 0 0 chr12 83507155 83507202 -60775287 + AT_rich Low_complexity Low_complexity 1 47 0 210 169 0 51 chr12 83507516 83507575 -60774914 + A-rich Low_complexity Low_complexity 3 58 0 618 321 48 20 chr12 83507691 83507940 -60774549 - MIR SINE MIR -4 258 3 642 147 0 0 chr12 83509780 83509875 -60772614 + AluSg/x SINE Alu 198 292 -20 21 57 0 0 chr12 83509908 83509943 -60772546 + AT_rich Low_complexity Low_complexity 1 35 0 188 391 29 23 chr12 83509971 83510145 -60772344 - MIR SINE MIR -67 195 21 400 287 172 19 chr12 83510185 83510342 -60772147 - MER5A DNA MER1_type 0 189 9 235 333 82 47 chr12 83511485 83511656 -60770833 - MIR SINE MIR -4 258 82 255 161 0 0 chr12 83512923 83512979 -60769510 + (TA)n Simple_repeat Simple_repeat 2 57 0 1485 45 0 0 chr12 83514795 83514973 -60767516 - AluY SINE Alu -16 295 118 1126 8 8 0 chr12 83514984 83515112 -60767377 + AluY SINE Alu 1 129 -182 24 0 0 0 chr12 83516011 83516035 -60766454 + AT_rich Low_complexity Low_complexity 1 24 0 2043 125 16 0 chr12 83518464 83518767 -60763722 - AluSx SINE Alu -4 308 1 21 36 0 0 chr12 83519229 83519257 -60763232 + AT_rich Low_complexity Low_complexity 1 28 0 191 36 36 0 chr12 83519795 83519823 -60762666 + (GA)n Simple_repeat Simple_repeat 2 30 0 30 59 0 0 chr12 83521182 83521233 -60761256 + AT_rich Low_complexity Low_complexity 1 51 0 1940 121 32 0 chr12 83523697 83523977 -60758512 - AluSg SINE Alu -21 289 1 2194 109 7 0 chr12 83524403 83524705 -60757784 + AluSg SINE Alu 1 304 -6 618 226 94 51 chr12 83524825 83525110 -60757379 + L1MC5 LINE L1 7388 7696 -265 2663 167 4 62 chr12 83525110 83525638 -60756851 + LOR1a LTR ERV1 1 497 0 618 226 94 51 chr12 83525638 83525746 -60756743 + L1MC5 LINE L1 7696 7798 -163 189 94 0 0 chr12 83526241 83526273 -60756216 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 542 260 144 0 chr12 83527442 83527600 -60754889 + MER5A DNA MER1_type 6 189 0 221 358 68 37 chr12 83528284 83528474 -60754015 - MIR SINE MIR -66 196 1 330 331 34 20 chr12 83528802 83528950 -60753539 - MER117 DNA MER1_type -38 159 10 30 55 0 27 chr12 83529308 83529362 -60753127 + AT_rich Low_complexity Low_complexity 1 54 -17 2208 105 0 0 chr12 83529362 83529647 -60752842 - AluSx SINE Alu -27 285 1 30 55 0 27 chr12 83529647 83529665 -60752824 + AT_rich Low_complexity Low_complexity 54 71 0 206 255 20 0 chr12 83530446 83530497 -60751992 - L2 LINE L2 -6 3266 3215 2143 117 0 0 chr12 83530610 83530909 -60751580 + AluY SINE Alu 1 299 -12 355 202 185 17 chr12 83531103 83531222 -60751267 + MIR SINE MIR 103 241 -21 336 321 123 36 chr12 83531977 83532285 -60750204 + L2 LINE L2 2071 2405 -909 759 251 5 91 chr12 83532677 83533136 -60749353 + MLT1G LTR MaLR 1 589 -1 23 0 0 0 chr12 83534131 83534154 -60748335 + AT_rich Low_complexity Low_complexity 1 23 0 3230 124 25 2 chr12 83535429 83535913 -60746576 + LOR1a LTR ERV1 3 497 0 222 37 0 0 chr12 83536000 83536027 -60746462 + (T)n Simple_repeat Simple_repeat 1 27 0 1350 185 7 60 chr12 83536350 83536631 -60745858 - AluJb SINE Alu -44 268 3 38 22 0 0 chr12 83536982 83537027 -60745462 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr12 83537375 83537399 -60745090 + AT_rich Low_complexity Low_complexity 1 24 0 444 37 0 0 chr12 83537972 83538026 -60744463 + (TG)n Simple_repeat Simple_repeat 2 55 0 511 255 90 5 chr12 83538357 83538597 -60743892 + L2 LINE L2 1769 1987 -1327 314 259 84 137 chr12 83538602 83538741 -60743748 + MIR SINE MIR 11 131 -131 2409 70 6 16 chr12 83538741 83539053 -60743436 + AluSc SINE Alu 1 309 0 314 259 84 137 chr12 83539053 83539176 -60743313 + MIR SINE MIR 131 259 -3 * 1383 305 85 50 chr12 83539170 83540457 -60742032 + L2 LINE L2 1974 3313 0 27 49 0 0 chr12 83540651 83540692 -60741797 + AT_rich Low_complexity Low_complexity 1 41 0 296 350 42 37 chr12 83540842 83541056 -60741433 - MIR SINE MIR -18 244 30 1687 142 0 59 chr12 83541122 83541447 -60741042 + AluSx SINE Alu 3 312 0 31 44 0 0 chr12 83541458 83541503 -60740986 + AT_rich Low_complexity Low_complexity 1 45 0 231 299 0 23 chr12 83543499 83543586 -60738903 + (CA)n Simple_repeat Simple_repeat 2 86 0 24 32 0 0 chr12 83543772 83543803 -60738686 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr12 83545106 83545128 -60737361 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 83545184 83545207 -60737282 + AT_rich Low_complexity Low_complexity 1 23 0 1151 226 19 85 chr12 83545677 83545862 -60736627 + MLT2C1 LTR ERVL 1 197 -200 1818 132 49 0 chr12 83545862 83546150 -60736339 - AluSg1 SINE Alu -7 302 1 1151 226 19 85 chr12 83546150 83546389 -60736100 + MLT2C1 LTR ERVL 197 397 0 351 96 0 0 chr12 83546516 83546568 -60735921 + (CA)n Simple_repeat Simple_repeat 1 52 0 237 253 0 13 chr12 83547716 83547791 -60734698 + (TA)n Simple_repeat Simple_repeat 2 75 0 22 56 0 0 chr12 83547831 83547867 -60734622 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr12 83549345 83549367 -60733122 + AT_rich Low_complexity Low_complexity 1 22 0 1953 128 6 10 chr12 83550061 83550373 -60732116 - AluSx SINE Alu -1 311 1 24 0 0 0 chr12 83550437 83550461 -60732028 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 83550900 83550923 -60731566 + AT_rich Low_complexity Low_complexity 1 23 0 630 150 0 48 chr12 83551636 83551823 -60730666 + (GGA)n Simple_repeat Simple_repeat 3 180 0 361 93 37 0 chr12 83551823 83551877 -60730612 + GA-rich Low_complexity Low_complexity 4 59 0 666 287 12 29 chr12 83552771 83553015 -60729474 + MER112 DNA MER1_type 20 259 -1 1696 267 117 10 chr12 83553101 83553715 -60728774 - L2 LINE L2 -720 2594 1915 265 277 0 0 chr12 83553713 83553778 -60728711 + MIR SINE MIR 180 244 -18 * 231 130 106 6 chr12 83553966 83554127 -60728362 + (TA)n Simple_repeat Simple_repeat 1 177 0 519 197 53 10 chr12 83554142 83554740 -60727749 + (TA)n Simple_repeat Simple_repeat 1 623 0 342 173 40 29 chr12 83554825 83554998 -60727491 + (TA)n Simple_repeat Simple_repeat 1 175 0 232 224 67 18 chr12 83555012 83555177 -60727312 + (TA)n Simple_repeat Simple_repeat 2 174 0 276 200 0 0 chr12 83555211 83555271 -60727218 + (TATG)n Simple_repeat Simple_repeat 1 60 0 182 308 159 9 chr12 83555276 83555383 -60727106 + L2 LINE L2 3191 3313 0 234 0 0 0 chr12 83555766 83555792 -60726697 + (T)n Simple_repeat Simple_repeat 1 26 0 233 213 0 66 chr12 83556130 83556191 -60726298 + MIR SINE MIR 191 247 -15 403 303 28 45 chr12 83556374 83556552 -60725937 + MER5B DNA MER1_type 2 176 -2 191 344 94 0 chr12 83557317 83557413 -60725076 - L2 LINE L2 0 3272 3168 1903 119 7 7 chr12 83557740 83558033 -60724456 + AluSx SINE Alu 1 293 -19 273 339 85 15 chr12 83558373 83558503 -60723986 - L2 LINE L2 0 3313 3175 2121 96 0 4 chr12 83558664 83558971 -60723518 + AluSx SINE Alu 3 308 0 28 29 0 0 chr12 83559442 83559477 -60723012 + AT_rich Low_complexity Low_complexity 1 35 0 1889 178 0 0 chr12 83559798 83560101 -60722388 - AluSq SINE Alu -2 311 9 300 256 74 49 chr12 83560789 83560992 -60721497 + MER112 DNA MER1_type 42 249 -11 300 335 88 33 chr12 83561132 83561314 -60721175 - MIR SINE MIR -68 194 3 213 138 0 108 chr12 83561389 83561454 -60721035 + L2 LINE L2 3256 3313 0 993 214 43 17 chr12 83561603 83561837 -60720652 + MLT1D LTR MaLR 266 505 0 26 0 0 0 chr12 83562608 83562634 -60719855 + AT_rich Low_complexity Low_complexity 1 26 0 1140 232 25 46 chr12 83563027 83563394 -60719095 + L1MC1 LINE L1 4589 4947 -1199 6047 149 54 18 chr12 83563408 83563616 -60718873 + L1MC1 LINE L1 5093 5292 -1041 7167 52 0 1 chr12 83563616 83565191 -60717298 - L1PA5 LINE L1 0 6154 4579 6047 149 54 18 chr12 83565191 83566168 -60716321 + L1MC1 LINE L1 5292 6333 0 192 125 0 0 chr12 83566174 83566206 -60716283 + (GGA)n Simple_repeat Simple_repeat 2 33 0 225 345 11 23 chr12 83566378 83566465 -60716024 + MIR SINE MIR 164 249 -13 26 0 0 0 chr12 83566664 83566690 -60715799 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr12 83566818 83566847 -60715642 + AT_rich Low_complexity Low_complexity 1 29 0 325 263 42 51 chr12 83567623 83567741 -60714748 - MIR3 SINE MIR -9 199 83 246 248 38 9 chr12 83569356 83569430 -60713059 + (TA)n Simple_repeat Simple_repeat 1 80 -28 225 94 0 0 chr12 83569430 83569462 -60713027 + (CA)n Simple_repeat Simple_repeat 1 32 0 246 248 38 9 chr12 83569462 83569492 -60712997 + (TA)n Simple_repeat Simple_repeat 80 108 0 425 122 14 0 chr12 83569528 83569602 -60712887 + (TA)n Simple_repeat Simple_repeat 1 75 0 1988 107 3 40 chr12 83569633 83569932 -60712557 + AluSx SINE Alu 1 288 -24 302 312 91 72 chr12 83570867 83571328 -60711161 + L2 LINE L2 2029 2498 -816 281 331 149 24 chr12 83571354 83571602 -60710887 + L2 LINE L2 2669 2947 -367 344 226 0 0 chr12 83572975 83573048 -60709441 - MIR SINE MIR -64 144 72 2137 105 3 0 chr12 83573258 83573602 -60708887 - AluSp SINE Alu 0 345 1 306 0 0 0 chr12 83576729 83576763 -60705726 + (CA)n Simple_repeat Simple_repeat 2 35 0 523 237 94 81 chr12 83577590 83577802 -60704687 + MIR SINE MIR 10 208 -54 25 0 0 0 chr12 83578718 83578743 -60703746 + AT_rich Low_complexity Low_complexity 1 25 0 493 205 20 73 chr12 83579551 83579664 -60702825 + MIR SINE MIR 52 157 -105 1954 139 137 13 chr12 83579664 83580044 -60702445 + MSTA LTR MaLR 1 427 -1 493 205 20 73 chr12 83580044 83580081 -60702408 + MIR SINE MIR 157 194 -68 23 0 0 0 chr12 83580525 83580548 -60701941 + AT_rich Low_complexity Low_complexity 1 23 0 282 377 60 4 chr12 83582272 83582524 -60699965 + L2 LINE L2 2461 2726 -588 335 261 42 61 chr12 83583207 83583372 -60699117 + HAL1 LINE L1 160 321 -2186 362 275 67 119 chr12 83583445 83583763 -60698726 + HAL1 LINE L1 482 815 -1692 234 62 0 0 chr12 83583763 83583795 -60698694 + (CA)n Simple_repeat Simple_repeat 1 32 0 362 275 67 119 chr12 83583795 83583824 -60698665 + HAL1 LINE L1 815 844 -1663 2253 67 0 3 chr12 83583824 83584109 -60698380 - AluY SINE Alu -27 284 1 362 275 67 119 chr12 83584109 83584316 -60698173 + HAL1 LINE L1 844 1008 -1499 264 186 0 0 chr12 83584345 83584404 -60698085 + (CA)n Simple_repeat Simple_repeat 2 60 0 1273 284 153 38 chr12 83584411 83585687 -60696802 + HAL1 LINE L1 1038 2459 -48 1653 129 44 61 chr12 83585756 83586051 -60696438 + AluSq SINE Alu 3 292 -21 222 37 0 0 chr12 83586054 83586081 -60696408 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2117 129 0 7 chr12 83587463 83587765 -60694724 - AluSx SINE Alu -6 306 7 558 265 101 0 chr12 83588121 83588310 -60694179 - MIR SINE MIR -38 224 17 787 246 22 0 chr12 83588892 83589075 -60693414 + MER5A DNA MER1_type 3 189 0 339 119 0 0 chr12 83589195 83589262 -60693227 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 189 0 0 0 chr12 83589472 83589493 -60692996 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 283 260 234 26 chr12 83590673 83590827 -60691662 + MIR SINE MIR 13 198 -64 456 277 106 53 chr12 83591325 83591682 -60690807 + MLT1J1 LTR MaLR 63 438 -8 262 283 35 18 chr12 83592573 83592686 -60689803 + L1ME LINE L1 5708 5822 -299 186 43 0 0 chr12 83593414 83593437 -60689052 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 426 323 71 0 chr12 83593735 83593890 -60688599 - MIR SINE MIR -44 218 53 1965 159 34 8 chr12 83596877 83597228 -60685261 - MER46B DNA MER2_type -1 235 1 22 0 0 0 chr12 83597339 83597361 -60685128 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr12 83597480 83597504 -60684985 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr12 83599944 83599972 -60682517 + AT_rich Low_complexity Low_complexity 1 28 0 318 296 37 0 chr12 83600072 83600180 -60682309 + MER81 DNA DNA 3 114 0 2204 106 3 0 chr12 83600666 83600967 -60681522 + AluSp SINE Alu 1 302 -11 180 152 0 0 chr12 83601472 83601505 -60680984 + (TA)n Simple_repeat Simple_repeat 2 34 0 1541 177 29 91 chr12 83602166 83602551 -60679938 + MLT1A1 LTR MaLR 1 361 -4 264 30 0 0 chr12 83603188 83603221 -60679268 + (CA)n Simple_repeat Simple_repeat 2 34 0 705 272 102 5 chr12 83604604 83604810 -60677679 + MLT1J2 LTR MaLR 12 237 -213 947 248 18 18 chr12 83604859 83605077 -60677412 - MER58A DNA MER1_type -5 219 2 445 235 0 0 chr12 83605099 83605184 -60677305 + MLT1J2 LTR MaLR 366 450 0 224 216 34 45 chr12 83605777 83605865 -60676624 + MIR3 SINE MIR 5 91 -117 214 331 128 8 chr12 83606248 83606381 -60676108 + L2 LINE L2 2697 2845 -469 2091 128 0 10 chr12 83606520 83606825 -60675664 - AluSx SINE Alu -4 308 7 486 325 26 16 chr12 83606964 83607158 -60675331 - MIR SINE MIR -2 260 65 328 276 16 71 chr12 83607469 83607596 -60674893 + MER20 DNA MER1_type 100 219 0 206 287 5 65 chr12 83607701 83607794 -60674695 - MIR SINE MIR -64 144 95 715 289 27 8 chr12 83608951 83609207 -60673282 + MIR SINE MIR 2 262 0 22 0 0 0 chr12 83609593 83609615 -60672874 + AT_rich Low_complexity Low_complexity 1 22 0 202 331 141 7 chr12 83609980 83610122 -60672367 + MIR SINE MIR 31 191 -71 421 270 0 0 chr12 83611305 83611394 -60671095 + MLT1J LTR MaLR 62 150 -361 818 214 43 33 chr12 83611473 83611683 -60670806 + MLT1J LTR MaLR 300 511 0 21 0 0 0 chr12 83612250 83612271 -60670218 + AT_rich Low_complexity Low_complexity 1 21 0 3836 127 28 114 chr12 83612357 83613215 -60669274 + LTR1 LTR ERV1 1 784 -1 194 376 104 16 chr12 83613299 83613424 -60669065 - L2 LINE L2 0 3272 3137 1992 123 15 9 chr12 83613795 83614121 -60668368 + L1MA3 LINE L1 5969 6296 -9 678 35 0 0 chr12 83615381 83615466 -60667023 + (TC)n Simple_repeat Simple_repeat 2 86 0 275 386 26 11 chr12 83616111 83616300 -60666189 - MIR SINE MIR -6 256 65 1460 253 37 16 chr12 83618196 83618592 -60663897 - MSTD LTR MaLR 0 396 5 712 307 62 17 chr12 83618681 83618922 -60663567 + MIR SINE MIR 5 256 -6 21 71 0 0 chr12 83619161 83619203 -60663286 + AT_rich Low_complexity Low_complexity 1 42 0 2105 113 0 44 chr12 83619356 83619676 -60662813 - AluSx SINE Alu -4 308 3 2444 227 60 32 chr12 83619760 83620126 -60662363 - L1ME1 LINE L1 -89 6146 5792 1628 142 67 0 chr12 83620126 83620380 -60662109 - AluSx SINE Alu -30 282 12 2444 227 60 32 chr12 83620380 83620873 -60661616 - L1ME1 LINE L1 -443 5792 5266 423 228 20 20 chr12 83620873 83620974 -60661515 + LTR40a LTR ERVL 1 101 -418 2853 269 85 66 chr12 83621070 83621690 -60660799 - L1ME1 LINE L1 -4326 2070 1463 1952 139 4 0 chr12 83621690 83622006 -60660483 - AluSx SINE Alu 0 317 1 2853 269 85 66 chr12 83622006 83622224 -60660265 - L1ME1 LINE L1 -4933 1463 1251 2044 101 3 62 chr12 83622224 83622532 -60659957 + AluSx SINE Alu 1 290 -22 2853 269 85 66 chr12 83622532 83623688 -60658801 - L1ME1 LINE L1 -5145 1251 37 22 0 0 0 chr12 83623906 83623928 -60658561 + AT_rich Low_complexity Low_complexity 1 22 0 309 155 0 0 chr12 83625503 83625561 -60656928 + (TG)n Simple_repeat Simple_repeat 1 58 0 1263 196 92 40 chr12 83626025 83626372 -60656117 + MLT1A1 LTR MaLR 1 365 0 189 0 0 0 chr12 83626506 83626527 -60655962 + (CA)n Simple_repeat Simple_repeat 1 21 0 192 40 0 0 chr12 83628096 83628121 -60654368 + (CAAAC)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 83630718 83630740 -60651749 + AT_rich Low_complexity Low_complexity 1 22 0 752 280 5 5 chr12 83632473 83632659 -60649830 - MER5A DNA MER1_type 0 189 4 2018 142 14 0 chr12 83633494 83633776 -60648713 + AluSx SINE Alu 1 286 -26 1902 122 9 61 chr12 83633891 83634218 -60648271 + AluSx SINE Alu 3 312 0 590 169 51 4 chr12 83634680 83634811 -60647678 + L1MB5 LINE L1 6030 6169 -11 321 288 0 0 chr12 83634969 83635035 -60647454 - L2 LINE L2 -2 3311 3246 2364 53 0 0 chr12 83636145 83636457 -60646032 + AluY SINE Alu 1 312 0 30712 113 10 68 chr12 83636990 83643515 -60638974 + L1PA7 LINE L1 12 6147 -7 2271 87 13 17 chr12 83643644 83643943 -60638546 + AluY SINE Alu 1 298 -13 194 209 0 0 chr12 83644604 83644647 -60637842 - L2 LINE L2 0 3313 3271 260 270 98 55 chr12 83645365 83645528 -60636961 - MIR SINE MIR -6 256 87 215 222 0 0 chr12 83646762 83646807 -60635682 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 338 369 117 0 chr12 83646824 83647038 -60635451 + MIR SINE MIR 4 242 -20 30 45 0 0 chr12 83647949 83647993 -60634496 + AT_rich Low_complexity Low_complexity 1 44 0 512 265 44 0 chr12 83647993 83648129 -60634360 - MIR SINE MIR -49 213 72 22 80 0 0 chr12 83648206 83648256 -60634233 + AT_rich Low_complexity Low_complexity 1 50 0 1775 158 24 10 chr12 83648401 83648722 -60633767 - AluSx SINE Alu 0 312 3 2168 103 7 0 chr12 83648760 83649050 -60633439 - AluSg SINE Alu -18 292 1 225 0 0 0 chr12 83649061 83649086 -60633403 + (A)n Simple_repeat Simple_repeat 1 25 0 25 90 0 0 chr12 83649162 83649229 -60633260 + AT_rich Low_complexity Low_complexity 1 67 0 268 290 131 21 chr12 83649297 83649442 -60633047 + MIR SINE MIR 36 196 -66 12792 148 31 45 chr12 83649601 83652053 -60630436 - Tigger1 DNA MER2_type -1 2417 1 6712 64 3 10 chr12 83652397 83653305 -60629184 + L1PA8 LINE L1 5265 6166 -6 863 326 57 6 chr12 83653852 83654183 -60628306 - LTR16B LTR ERVL -114 350 3 1600 184 42 21 chr12 83654589 83654925 -60627564 + MER2 DNA MER2_type 1 343 -1 378 294 20 7 chr12 83654950 83655096 -60627393 + MIR SINE MIR 63 210 -52 2373 93 7 0 chr12 83655237 83655537 -60626952 - AluSq SINE Alu -11 302 1 959 104 96 138 chr12 83656642 83656774 -60625715 - MER30 DNA MER1_type 0 230 111 2411 88 0 3 chr12 83656774 83657082 -60625407 - AluSq SINE Alu -4 309 3 959 104 96 138 chr12 83657082 83657189 -60625300 - MER30 DNA MER1_type -119 111 1 476 258 8 0 chr12 83658060 83658180 -60624309 - MIR3 SINE MIR -5 203 83 510 340 0 0 chr12 83658469 83658619 -60623870 - MIR SINE MIR -112 150 1 2325 94 15 87 chr12 83658863 83659267 -60623222 + THE1C LTR MaLR 1 375 0 596 345 25 13 chr12 83662434 83662672 -60619817 - MIR SINE MIR -11 251 11 186 304 65 91 chr12 83662741 83663004 -60619485 + L2 LINE L2 2804 3059 -213 23 0 0 0 chr12 83664126 83664149 -60618340 + AT_rich Low_complexity Low_complexity 1 23 0 356 214 0 19 chr12 83664271 83664374 -60618115 + G-rich Low_complexity Low_complexity 2 102 0 588 282 37 57 chr12 83664557 83664802 -60617687 + MLT1E LTR MaLR 1 240 -353 759 206 147 50 chr12 83664807 83664871 -60617618 + MLT1E LTR MaLR 353 409 -184 3686 95 55 17 chr12 83664871 83665458 -60617031 - MER4B LTR ERV1 0 610 2 759 206 147 50 chr12 83665458 83665611 -60616878 + MLT1E LTR MaLR 409 591 -2 1560 196 75 75 chr12 83665718 83666209 -60616280 + MER67D LTR ERV1 1 491 -23 206 241 0 0 chr12 83666545 83666599 -60615890 + A-rich Low_complexity Low_complexity 1 54 0 24 32 0 0 chr12 83667009 83667040 -60615449 + AT_rich Low_complexity Low_complexity 1 31 0 239 167 62 0 chr12 83667761 83667809 -60614680 + U5 snRNA snRNA 1 51 -65 2497 65 0 0 chr12 83667974 83668280 -60614209 - AluY SINE Alu -5 306 1 332 299 9 9 chr12 83668307 83668461 -60614028 + GA-rich Low_complexity Low_complexity 1 154 0 641 262 12 19 chr12 83668529 83668785 -60613704 + AluSx SINE Alu 29 282 -30 532 277 71 33 chr12 83670290 83670474 -60612015 - MIR SINE MIR -69 193 3 979 256 75 65 chr12 83671591 83672055 -60610434 + MLT1H LTR MaLR 81 549 0 442 258 119 44 chr12 83672630 83672789 -60609700 - LTR33A LTR ERVL 0 523 353 370 359 130 0 chr12 83673156 83673379 -60609110 + MIR SINE MIR 7 258 -4 890 284 54 49 chr12 83674327 83674718 -60607771 + L2 LINE L2 2921 3313 0 21 0 0 0 chr12 83675659 83675680 -60606809 + AT_rich Low_complexity Low_complexity 1 21 0 519 123 25 0 chr12 83676998 83677079 -60605410 + AluSg/x SINE Alu 215 297 -15 187 286 0 20 chr12 83677230 83677279 -60605210 - MIR SINE MIR -1 261 214 1860 118 68 0 chr12 83677617 83677896 -60604593 + AluSq SINE Alu 13 310 -3 229 382 49 8 chr12 83678007 83678130 -60604359 + L3 LINE CR1 233 360 -1217 941 231 62 18 chr12 83678142 83678415 -60604074 - MLT1C LTR MaLR -182 285 1 238 346 109 30 chr12 83678416 83678618 -60603871 - MIR SINE MIR -27 235 18 2379 170 17 7 chr12 83680004 83680410 -60602079 + MSTB LTR MaLR 15 424 -2 25 31 0 0 chr12 83680758 83680790 -60601699 + AT_rich Low_complexity Low_complexity 1 32 0 562 290 63 21 chr12 83681367 83681605 -60600884 - MIR SINE MIR -5 257 10 21 36 0 0 chr12 83682401 83682429 -60600060 + AT_rich Low_complexity Low_complexity 1 28 0 230 288 45 0 chr12 83682769 83682835 -60599654 + MIR SINE MIR 117 185 -77 757 268 95 0 chr12 83683700 83683931 -60598558 - MIR SINE MIR -3 259 7 185 132 0 38 chr12 83684244 83684297 -60598192 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 202 343 59 29 chr12 83685007 83685109 -60597380 + MIR3 SINE MIR 91 195 -13 11565 28 0 0 chr12 83685852 83687996 -60594493 - L1PA4 LINE L1 0 6155 4016 1116 37 0 0 chr12 83687996 83688132 -60594357 + L1PA4 LINE L1 3855 3990 -2156 21 0 0 0 chr12 83688416 83688437 -60594052 + AT_rich Low_complexity Low_complexity 1 21 0 5073 143 21 55 chr12 83688751 83688785 -60593704 + L1PA16 LINE L1 4933 4967 -1199 2092 126 13 0 chr12 83688785 83689087 -60593402 - AluSx SINE Alu -6 306 1 5073 143 21 55 chr12 83689087 83690137 -60592352 + L1PA16 LINE L1 4967 5958 -208 2423 70 0 0 chr12 83690137 83690435 -60592054 + AluY SINE Alu 1 298 -13 5073 143 21 55 chr12 83690435 83690622 -60591867 + L1PA16 LINE L1 5958 6150 -16 5650 147 26 12 chr12 83690805 83691767 -60590722 - Tigger1 DNA MER2_type 0 2418 1444 222 290 37 37 chr12 83691890 83691997 -60590492 + L2 LINE L2 3205 3311 -2 188 297 40 27 chr12 83692375 83692449 -60590040 + MIR SINE MIR 82 156 -106 469 238 191 0 chr12 83693409 83693535 -60588954 - MER5A DNA MER1_type -30 159 10 481 249 121 86 chr12 83693604 83693977 -60588512 + Charlie8 DNA MER1_type 21 406 -2011 180 0 0 0 chr12 83694531 83694551 -60587938 + (T)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr12 83694626 83694654 -60587835 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr12 83695169 83695208 -60587281 + (CA)n Simple_repeat Simple_repeat 2 40 0 650 244 73 124 chr12 83695584 83695899 -60586590 + MER102b DNA MER1_type 43 341 0 233 258 65 0 chr12 83697628 83697690 -60584799 - MIR SINE MIR -2 260 195 2092 125 0 0 chr12 83697805 83698101 -60584388 + AluY SINE Alu 1 296 -15 250 272 114 18 chr12 83698720 83698834 -60583655 + MIR3 SINE MIR 4 128 -80 240 169 31 0 chr12 83699179 83699244 -60583245 + (TTATA)n Simple_repeat Simple_repeat 4 70 0 29 78 0 0 chr12 83699244 83699308 -60583181 + AT_rich Low_complexity Low_complexity 1 64 0 27 0 0 0 chr12 83699347 83699374 -60583115 + AT_rich Low_complexity Low_complexity 1 27 0 1105 163 4 98 chr12 83700109 83700355 -60582134 + AluJb SINE Alu 6 228 -84 1749 200 110 10 chr12 83701079 83701469 -60581020 - MLT2B1 LTR ERVL -91 429 1 21 0 0 0 chr12 83702011 83702032 -60580457 + AT_rich Low_complexity Low_complexity 1 21 0 1413 180 70 15 chr12 83702038 83702310 -60580179 - AluJb SINE Alu -25 287 1 23 0 0 0 chr12 83702766 83702789 -60579700 + AT_rich Low_complexity Low_complexity 1 23 0 321 353 26 32 chr12 83702884 83703040 -60579449 - L2 LINE L2 -1 3312 3158 22 0 0 0 chr12 83704607 83704629 -60577860 + AT_rich Low_complexity Low_complexity 1 22 0 199 214 0 89 chr12 83705051 83705107 -60577382 - MIR SINE MIR -6 256 206 201 370 83 0 chr12 83705168 83705276 -60577213 + MIR3 SINE MIR 81 197 -11 2590 185 30 26 chr12 83705711 83706242 -60576247 + MLT2B3 LTR ERVL 1 533 -21 216 186 0 0 chr12 83706262 83706321 -60576168 + (TCCA)n Simple_repeat Simple_repeat 3 61 0 200 195 0 0 chr12 83706838 83706879 -60575610 + CT-rich Low_complexity Low_complexity 1 41 0 5689 209 9 8 chr12 83706925 83709030 -60573459 - L1PA16 LINE L1 -10 6156 4055 180 115 0 0 chr12 83709340 83709366 -60573123 + MER5A DNA MER1_type 163 188 -1 415 206 191 44 chr12 83709443 83709579 -60572910 + FAM SINE Alu 1 49 0 1595 217 20 15 chr12 83709593 83709934 -60572555 - MER7A DNA MER2_type -5 341 1 250 337 20 20 chr12 83710664 83710765 -60571724 + L3 LINE CR1 1338 1438 -139 1917 122 6 55 chr12 83710813 83711142 -60571347 - AluSq SINE Alu 0 313 1 2427 190 53 25 chr12 83711849 83711999 -60570490 - L1MC3 LINE L1 -15 7770 7626 2076 128 3 10 chr12 83711999 83712311 -60570178 + AluSx SINE Alu 1 310 -2 2427 190 53 25 chr12 83712311 83712728 -60569761 - L1MC3 LINE L1 -159 7626 7187 233 219 9 86 chr12 83712734 83712839 -60569650 - MLT1F1 LTR MaLR -426 141 45 318 183 14 0 chr12 83712840 83712911 -60569578 - L1MC3 LINE L1 -680 7105 7034 252 330 9 0 chr12 83712984 83713099 -60569390 + HAL1 LINE L1 1546 1661 -846 29 47 0 0 chr12 83713209 83713252 -60569237 + AT_rich Low_complexity Low_complexity 1 43 0 23 78 0 0 chr12 83714442 83714493 -60567996 + AT_rich Low_complexity Low_complexity 1 51 0 986 304 124 8 chr12 83714946 83715324 -60567165 - L2 LINE L2 0 3313 2892 31 26 0 0 chr12 83715372 83715410 -60567079 + AT_rich Low_complexity Low_complexity 1 38 0 1533 184 43 13 chr12 83716015 83716314 -60566175 + AluJb SINE Alu 1 308 -4 1632 153 111 13 chr12 83716348 83716655 -60565834 - MER1B DNA MER1_type 0 337 1 303 93 0 0 chr12 83716752 83716795 -60565694 + (TA)n Simple_repeat Simple_repeat 1 43 0 335 291 0 19 chr12 83717228 83717331 -60565158 - L1MC4 LINE L1 -1339 6703 6603 1946 147 13 43 chr12 83717726 83718101 -60564388 - THE1B LTR MaLR 0 364 1 6813 63 2 1 chr12 83718822 83719701 -60562788 + L1PA7 LINE L1 5269 6148 -6 2180 116 0 0 chr12 83720609 83720910 -60561579 - AluSc SINE Alu -8 301 1 345 367 76 38 chr12 83721093 83721488 -60561001 - L2 LINE L2 0 3313 2904 199 353 129 7 chr12 83721718 83721857 -60560632 - MIR3 SINE MIR -34 174 19 315 0 0 0 chr12 83721925 83721960 -60560529 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1678 129 0 8 chr12 83721967 83722207 -60560282 - AluSx SINE Alu -74 238 1 2094 122 0 0 chr12 83722213 83722509 -60559980 - AluSx SINE Alu -4 308 13 228 111 0 0 chr12 83722629 83722665 -60559824 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr12 83722667 83722698 -60559791 + AT_rich Low_complexity Low_complexity 1 31 0 210 37 0 0 chr12 83722747 83722774 -60559715 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2149 94 43 62 chr12 83723233 83723275 -60559214 - THE1B LTR MaLR 0 364 323 2300 63 0 3 chr12 83723275 83723595 -60558894 + AluY SINE Alu 1 319 0 2149 94 43 62 chr12 83723595 83723920 -60558569 - THE1B LTR MaLR -41 323 1 237 254 0 14 chr12 83725179 83725250 -60557239 - L1MC4 LINE L1 -1359 6683 6614 277 333 20 53 chr12 83726069 83726207 -60556282 - L2 LINE L2 0 3313 3179 201 94 0 0 chr12 83726207 83726239 -60556250 + (CAA)n Simple_repeat Simple_repeat 2 33 0 277 333 20 53 chr12 83726239 83726250 -60556239 - L2 LINE L2 -134 3179 3169 23 33 0 0 chr12 83727484 83727514 -60554975 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 83730358 83730380 -60552109 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 83730515 83730543 -60551946 + AT_rich Low_complexity Low_complexity 1 28 0 376 208 39 15 chr12 83730573 83730703 -60551786 + (TA)n Simple_repeat Simple_repeat 1 133 0 371 212 35 26 chr12 83730875 83730988 -60551501 - L1MC4 LINE L1 -1886 5922 5809 198 0 0 0 chr12 83731213 83731235 -60551254 + (T)n Simple_repeat Simple_repeat 1 22 0 895 37 0 0 chr12 83731364 83731472 -60551017 - L1PA2 LINE L1 -2 6153 6046 22 35 0 0 chr12 83733427 83733456 -60549033 + AT_rich Low_complexity Low_complexity 1 29 0 519 320 105 14 chr12 83733661 83733880 -60548609 - MIR SINE MIR -1 261 23 30 59 0 0 chr12 83734325 83734376 -60548113 + AT_rich Low_complexity Low_complexity 1 51 0 28 29 0 0 chr12 83734412 83734447 -60548042 + AT_rich Low_complexity Low_complexity 1 35 0 1229 249 97 40 chr12 83735020 83735473 -60547016 - MLT1H LTR MaLR 0 549 71 388 392 61 13 chr12 83735497 83735808 -60546681 + L3 LINE CR1 263 588 -989 2415 52 0 32 chr12 83735848 83736158 -60546331 - AluY SINE Alu -11 300 1 366 61 0 0 chr12 83736373 83736422 -60546067 + (CA)n Simple_repeat Simple_repeat 2 50 0 233 293 0 50 chr12 83736438 83736537 -60545952 - L1ME LINE L1 -217 5904 5811 419 336 63 65 chr12 83736560 83736911 -60545578 + L3 LINE CR1 845 1194 -383 243 271 0 0 chr12 83737128 83737187 -60545302 + L3 LINE CR1 1319 1377 -200 1185 241 54 52 chr12 83737487 83738182 -60544307 + L1ME3A LINE L1 5127 5821 -349 290 270 48 24 chr12 83738223 83738349 -60544140 + L1ME3A LINE L1 6042 6170 0 1951 134 0 14 chr12 83738415 83738739 -60543750 - AluSx SINE Alu 0 322 3 374 306 118 29 chr12 83738991 83739161 -60543328 + MIR SINE MIR 78 262 0 21 0 0 0 chr12 83739270 83739291 -60543198 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 83739964 83739993 -60542496 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 83740121 83740147 -60542342 + AT_rich Low_complexity Low_complexity 1 26 0 225 345 11 23 chr12 83740346 83740433 -60542056 - MIR SINE MIR -13 249 164 192 125 0 0 chr12 83740605 83740637 -60541852 + (TCC)n Simple_repeat Simple_repeat 2 33 0 5788 140 53 7 chr12 83740643 83741617 -60540872 - L1MC1 LINE L1 0 6333 5315 7255 41 3 7 chr12 83741620 83743199 -60539290 + L1PA5 LINE L1 4579 6154 0 202 343 59 29 chr12 83743945 83744047 -60538442 - MIR3 SINE MIR -13 195 91 185 132 0 38 chr12 83744757 83744810 -60537679 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 757 268 95 0 chr12 83745123 83745354 -60537135 + MIR SINE MIR 7 259 -3 1251 189 40 48 chr12 83746493 83746847 -60535642 - THE1C LTR MaLR -6 369 19 348 333 77 46 chr12 83746931 83747346 -60535143 + L2 LINE L2 2487 2914 -400 209 410 60 0 chr12 83747604 83747721 -60534768 + L2 LINE L2 3144 3267 -5 224 335 81 37 chr12 83748157 83748318 -60534171 - L2 LINE L2 -236 3036 2869 213 306 16 0 chr12 83748376 83748438 -60534051 + (TATG)n Simple_repeat Simple_repeat 4 66 0 348 248 0 73 chr12 83748792 83748901 -60533588 + L1MC4 LINE L1 6603 6703 -1339 1626 156 111 13 chr12 83748998 83749305 -60533184 + MER1B DNA MER1_type 1 337 0 1461 191 43 13 chr12 83749339 83749638 -60532851 - AluJb SINE Alu -4 308 1 21 57 0 0 chr12 83749964 83749999 -60532490 + AT_rich Low_complexity Low_complexity 1 35 0 31 26 0 0 chr12 83750236 83750274 -60532215 + AT_rich Low_complexity Low_complexity 1 38 0 922 291 139 11 chr12 83750322 83750696 -60531793 + L2 LINE L2 2892 3313 0 29 47 0 0 chr12 83751570 83751613 -60530876 + AT_rich Low_complexity Low_complexity 1 43 0 232 339 9 0 chr12 83751723 83751838 -60530651 - HAL1 LINE L1 -846 1661 1546 243 200 29 0 chr12 83751911 83751981 -60530508 + L1MC3 LINE L1 7034 7105 -680 233 219 9 86 chr12 83751982 83752087 -60530402 + MLT1F1 LTR MaLR 45 141 -426 1380 201 51 37 chr12 83752093 83752446 -60530043 + L1MC3 LINE L1 7187 7544 -241 1956 147 13 43 chr12 83753041 83753416 -60529073 - THE1B LTR MaLR 0 364 1 325 263 42 51 chr12 83754388 83754506 -60527983 - MIR3 SINE MIR -9 199 83 443 118 13 0 chr12 83754934 83755010 -60527479 + (TA)n Simple_repeat Simple_repeat 1 77 0 2159 108 0 3 chr12 83755041 83755327 -60527162 + AluSx SINE Alu 1 285 -27 26 74 0 0 chr12 83755327 83755381 -60527108 + AT_rich Low_complexity Low_complexity 1 54 0 231 299 0 23 chr12 83756402 83756489 -60526000 + (CA)n Simple_repeat Simple_repeat 2 86 0 225 154 19 19 chr12 83758201 83758253 -60524236 + (TA)n Simple_repeat Simple_repeat 1 52 0 224 362 38 32 chr12 83758406 83758591 -60523898 + MIR SINE MIR 75 260 -2 23 54 0 0 chr12 83758674 83758711 -60523778 + GC_rich Low_complexity Low_complexity 1 37 0 255 227 35 35 chr12 83758717 83758902 -60523587 + (CGCGG)n Simple_repeat Simple_repeat 1 185 0 265 112 17 69 chr12 83758903 83759019 -60523470 + (CCCCCG)n Simple_repeat Simple_repeat 2 111 0 489 193 0 23 chr12 83810270 83810358 -60472131 + AluS SINE Alu 227 312 0 12420 117 9 23 chr12 83810359 83812503 -60469986 - L1P3 LINE L1 -4306 2155 11 291 279 97 75 chr12 83814647 83814873 -60467616 - MIR SINE MIR 0 262 32 306 250 152 24 chr12 83815251 83815415 -60467074 + MIR SINE MIR 65 249 -13 236 219 16 0 chr12 83815709 83815773 -60466716 + (TA)n Simple_repeat Simple_repeat 1 65 0 * 360 215 11 32 chr12 83815750 83815777 -60466712 + L1MC4 LINE L1 6612 6638 -1404 1951 124 21 11 chr12 83815777 83816060 -60466429 + AluSx SINE Alu 1 286 -26 360 215 11 32 chr12 83816060 83816125 -60466364 + L1MC4 LINE L1 6638 6702 -1340 2838 240 17 6 chr12 83816142 83816776 -60465713 + MER82 DNA MER2_type 11 651 -2 234 62 0 0 chr12 83817632 83817664 -60464825 + (GA)n Simple_repeat Simple_repeat 2 33 0 180 111 0 0 chr12 83817864 83817891 -60464598 + (TATG)n Simple_repeat Simple_repeat 2 28 0 449 282 0 0 chr12 83817902 83818012 -60464477 - L2 LINE L2 -15 3298 3189 291 215 0 0 chr12 83818058 83818123 -60464366 + (TA)n Simple_repeat Simple_repeat 2 66 0 1135 294 65 35 chr12 83818286 83818715 -60463774 - MLT1J1 LTR MaLR 0 446 5 2158 131 0 0 chr12 83819287 83819577 -60462912 + AluSx SINE Alu 1 290 -22 749 286 30 26 chr12 83820439 83820673 -60461816 - MIR SINE MIR -13 249 15 1922 150 69 12 chr12 83821015 83821348 -60461141 - THE1B LTR MaLR -2 362 11 33 43 0 0 chr12 83822056 83822103 -60460386 + AT_rich Low_complexity Low_complexity 1 47 0 183 42 0 0 chr12 83822105 83822129 -60460360 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2213 112 0 0 chr12 83822132 83822427 -60460062 - AluSc SINE Alu -14 295 1 273 29 0 0 chr12 83822802 83822836 -60459653 + (TG)n Simple_repeat Simple_repeat 1 34 0 193 282 26 13 chr12 83823317 83823395 -60459094 + L2 LINE L2 3165 3243 -70 615 230 174 6 chr12 83823882 83823911 -60458578 + MER5A DNA MER1_type 1 24 -165 198 0 0 0 chr12 83823911 83823933 -60458556 + (CAG)n Simple_repeat Simple_repeat 1 22 0 615 230 174 6 chr12 83823933 83824064 -60458425 + MER5A DNA MER1_type 24 188 -1 350 286 21 29 chr12 83825274 83825414 -60457075 - MER103 DNA DNA -15 151 13 209 387 168 7 chr12 83825486 83825623 -60456866 - MIR3 SINE MIR -48 160 2 904 224 89 23 chr12 83827031 83827245 -60455244 - MLT1B LTR MaLR -16 374 178 462 114 0 0 chr12 83827245 83827315 -60455174 + (CCTG)n Simple_repeat Simple_repeat 2 71 0 904 224 89 23 chr12 83827315 83827505 -60454984 - MLT1B LTR MaLR -212 178 2 405 239 9 46 chr12 83827710 83827819 -60454670 - Charlie8 DNA MER1_type -2221 196 92 1074 232 12 17 chr12 83828806 83829047 -60453442 + MLT1A1 LTR MaLR 23 262 -103 27 0 0 0 chr12 83829137 83829164 -60453325 + AT_rich Low_complexity Low_complexity 1 27 0 196 318 0 0 chr12 83830407 83830473 -60452016 - L2 LINE L2 0 3272 3207 354 165 11 22 chr12 83830792 83830883 -60451606 + GA-rich Low_complexity Low_complexity 2 91 0 288 383 87 0 chr12 83830926 83831109 -60451380 - MIR SINE MIR -16 246 48 242 118 75 0 chr12 83831435 83831528 -60450961 + (TA)n Simple_repeat Simple_repeat 1 100 0 349 266 124 45 chr12 83832174 83832441 -60450048 - L1ME4a LINE L1 -48 6073 5786 650 318 19 9 chr12 83833021 83833235 -60449254 - MIR SINE MIR 0 262 47 1492 44 0 0 chr12 83833380 83833391 -60449098 - L1P LINE L1 -1133 5013 5003 7704 22 0 3 chr12 83833391 83834463 -60448026 - L1PA2 LINE L1 -2 6153 5083 1492 44 0 0 chr12 83834463 83834632 -60447857 - L1P LINE L1 -1142 5004 4833 * 17266 29 1 2 chr12 83834607 83836719 -60445770 + L1P LINE L1 2722 4831 -1315 408 318 68 13 chr12 83836804 83837040 -60445449 + HAL1 LINE L1 38 286 -2221 294 384 37 32 chr12 83837058 83837248 -60445241 - L2 LINE L2 -88 3184 2994 2149 116 0 7 chr12 83837257 83837558 -60444931 + AluSq SINE Alu 1 299 -14 602 274 43 29 chr12 83837640 83837848 -60444641 + HAL1 LINE L1 307 517 -1990 230 349 61 6 chr12 83838047 83838198 -60444291 + MIR SINE MIR 1 144 -64 319 274 44 18 chr12 83838211 83838324 -60444165 - MLT1K LTR MaLR -14 574 459 247 325 75 78 chr12 83839049 83839304 -60443185 + L2 LINE L2 2927 3180 -92 237 375 0 11 chr12 83839409 83839497 -60442992 + L2 LINE L2 3186 3272 0 578 220 34 28 chr12 83840153 83840330 -60442159 - MER58 DNA MER1_type -3 2417 2240 448 130 14 0 chr12 83840424 83840493 -60441996 - MLT1B LTR MaLR 0 390 321 2367 84 0 6 chr12 83840495 83840806 -60441683 + AluSx SINE Alu 3 311 -1 202 300 125 0 chr12 83841200 83841280 -60441209 + L2 LINE L2 3179 3268 -4 2791 3 0 0 chr12 83841479 83841778 -60440711 - AluYa5 SINE Alu -12 299 1 414 0 0 0 chr12 83842292 83842338 -60440151 + (CA)n Simple_repeat Simple_repeat 1 46 0 26 0 0 0 chr12 83842608 83842634 -60439855 + AT_rich Low_complexity Low_complexity 1 26 0 33 25 0 0 chr12 83843022 83843062 -60439427 + AT_rich Low_complexity Low_complexity 1 40 0 288 154 0 0 chr12 83843088 83843140 -60439349 + (TA)n Simple_repeat Simple_repeat 2 53 0 186 47 0 70 chr12 83845216 83845259 -60437230 + (TA)n Simple_repeat Simple_repeat 2 41 0 584 321 33 25 chr12 83847094 83847337 -60435152 - MIR SINE MIR -17 245 1 260 353 70 19 chr12 83847546 83847702 -60434787 + L2 LINE L2 2244 2407 -907 713 287 63 43 chr12 83847808 83848128 -60434361 + MLT1I LTR MaLR 96 380 -29 3427 293 82 65 chr12 83848385 83849890 -60432599 - L2 LINE L2 -1300 2014 471 1995 202 46 5 chr12 83849890 83850301 -60432188 + MSTC LTR MaLR 1 428 0 3427 293 82 65 chr12 83850301 83850621 -60431868 - L2 LINE L2 -2843 471 158 2622 89 17 3 chr12 83850995 83851354 -60431135 - THE1B LTR MaLR 0 364 1 2824 16 0 0 chr12 83854595 83854906 -60427583 + AluYa5 SINE Alu 1 311 0 1357 193 33 54 chr12 83854999 83855330 -60427159 + MLT1B LTR MaLR 1 324 -66 1249 126 11 5 chr12 83855332 83855522 -60426967 - AluSq SINE Alu -12 301 111 2016 268 212 45 chr12 83855629 83856074 -60426415 + L2 LINE L2 1110 1480 -1834 2278 90 7 0 chr12 83856074 83856375 -60426114 + AluY SINE Alu 1 303 -8 2016 268 212 45 chr12 83856375 83856631 -60425858 + L2 LINE L2 1480 1692 -1622 2074 160 46 57 chr12 83856631 83856694 -60425795 + MSTB1 LTR MaLR 1 63 -369 2176 134 0 0 chr12 83856694 83857001 -60425488 + AluSg SINE Alu 1 307 -3 2074 160 46 57 chr12 83857001 83857374 -60425115 + MSTB1 LTR MaLR 63 432 0 2016 268 212 45 chr12 83857374 83857860 -60424629 + L2 LINE L2 1692 2496 -818 1357 217 3 30 chr12 83858532 83858832 -60423657 + AluJo SINE Alu 1 292 -20 15774 135 38 13 chr12 83858869 83859321 -60423168 + Tigger4(Zombi) DNA MER2_type 1 440 -2291 285 51 0 0 chr12 83859321 83859360 -60423129 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 15774 135 38 13 chr12 83859360 83861571 -60420918 + Tigger4(Zombi) DNA MER2_type 440 2731 0 547 303 147 86 chr12 83862657 83862892 -60419597 + MLT1K LTR MaLR 11 230 -358 3343 11 0 0 chr12 83862892 83863271 -60419218 + L1PA2 LINE L1 5771 6149 -6 547 303 147 86 chr12 83863271 83863537 -60418952 + MLT1K LTR MaLR 230 543 -45 601 341 41 16 chr12 83865159 83865476 -60417013 + MLT1I LTR MaLR 63 387 -22 1004 213 33 0 chr12 83865485 83865696 -60416793 - MER20 DNA MER1_type 0 219 2 643 230 75 6 chr12 83865707 83865881 -60416608 + MER5A DNA MER1_type 2 187 -2 206 159 23 0 chr12 83867398 83867442 -60415047 + (TG)n Simple_repeat Simple_repeat 1 45 0 490 350 84 25 chr12 83872776 83873179 -60409310 + L3 LINE CR1 1145 1571 -6 333 316 0 26 chr12 83873345 83873497 -60408992 + CT-rich Low_complexity Low_complexity 2 149 0 1844 160 13 0 chr12 83873938 83874244 -60408245 + AluSx SINE Alu 1 310 -2 21319 99 3 5 chr12 83874362 83876728 -60405761 - L1PA7 LINE L1 -2 6152 3791 2075 124 3 0 chr12 83876728 83877019 -60405470 - AluSg SINE Alu -18 292 1 21319 99 3 5 chr12 83877019 83878563 -60403926 - L1PA7 LINE L1 -2363 3791 2246 389 162 0 0 chr12 83878564 83878632 -60403857 - L1PA7 LINE L1 -4247 1899 1832 607 182 189 0 chr12 83878786 83878918 -60403571 + MER5A DNA MER1_type 33 189 0 1162 228 164 24 chr12 83879245 83879622 -60402867 - MLT1F1 LTR MaLR 0 567 138 1825 112 34 24 chr12 83879622 83879917 -60402572 - THE1C LTR MaLR 0 375 78 294 27 0 0 chr12 83880019 83880056 -60402433 + L1P LINE L1 4795 4831 -1315 426 318 68 13 chr12 83880141 83880377 -60402112 + HAL1 LINE L1 38 286 -2221 299 384 37 32 chr12 83880395 83880585 -60401904 - L2 LINE L2 -88 3184 2994 2117 116 0 7 chr12 83880594 83880895 -60401594 + AluSq SINE Alu 1 299 -14 601 274 43 29 chr12 83880977 83881185 -60401304 + HAL1 LINE L1 307 517 -1990 232 349 61 6 chr12 83881384 83881535 -60400954 + MIR SINE MIR 1 144 -64 325 274 44 18 chr12 83881548 83881661 -60400828 - MLT1K LTR MaLR -14 574 459 244 325 75 78 chr12 83882386 83882641 -60399848 + L2 LINE L2 2927 3180 -92 241 375 0 11 chr12 83882746 83882834 -60399655 + L2 LINE L2 3186 3272 0 595 226 28 23 chr12 83883489 83883666 -60398823 - MER58 DNA MER1_type -3 2417 2240 1680 180 15 66 chr12 83883760 83883831 -60398658 - MLT1B LTR MaLR 0 390 317 2157 110 3 3 chr12 83883831 83884130 -60398359 + AluSq SINE Alu 3 301 -12 1680 180 15 66 chr12 83884130 83884469 -60398020 - MLT1B LTR MaLR -73 317 1 2803 10 0 0 chr12 83884554 83884863 -60397626 - AluYa5 SINE Alu -2 309 1 2630 89 17 0 chr12 83888105 83888463 -60394026 + THE1B LTR MaLR 1 364 0 3436 293 82 65 chr12 83888837 83889157 -60393332 + L2 LINE L2 158 471 -2843 1801 206 51 14 chr12 83889157 83889570 -60392919 - MSTC LTR MaLR 0 428 1 3436 293 82 65 chr12 83889570 83891075 -60391414 + L2 LINE L2 471 2014 -1300 713 287 63 43 chr12 83891332 83891652 -60390837 - MLT1I LTR MaLR -29 380 96 254 353 70 19 chr12 83891758 83891914 -60390575 - L2 LINE L2 -907 2407 2244 588 325 33 25 chr12 83892123 83892366 -60390123 + MIR SINE MIR 1 245 -17 186 47 0 70 chr12 83894204 83894247 -60388242 + (TA)n Simple_repeat Simple_repeat 2 41 0 270 160 0 0 chr12 83896324 83896374 -60386115 + (TA)n Simple_repeat Simple_repeat 2 51 0 26 30 0 0 chr12 83896400 83896433 -60386056 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr12 83896821 83896847 -60385642 + AT_rich Low_complexity Low_complexity 1 26 0 324 0 0 0 chr12 83897121 83897157 -60385332 + (TG)n Simple_repeat Simple_repeat 1 36 0 2853 3 0 0 chr12 83897671 83897982 -60384507 + AluYa5 SINE Alu 1 311 0 200 300 125 0 chr12 83898185 83898265 -60384224 - L2 LINE L2 -4 3268 3179 2551 48 0 3 chr12 83898664 83898975 -60383514 - AluY SINE Alu -1 310 1 211 364 0 0 chr12 83899518 83899584 -60382905 + L2 LINE L2 3188 3253 -19 23 33 0 0 chr12 83899924 83899954 -60382535 + AT_rich Low_complexity Low_complexity 1 30 0 1378 209 19 44 chr12 83899998 83900314 -60382175 - AluJo SINE Alu -4 308 1 2027 99 18 0 chr12 83900943 83901216 -60381273 + AluSc SINE Alu 4 281 -28 246 87 0 0 chr12 83901235 83901281 -60381208 - LTR66 LTR ERVL -171 439 394 297 128 0 0 chr12 83901283 83901330 -60381159 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 230 394 40 10 chr12 83902007 83902106 -60380383 + MER91A DNA MER1_type 14 115 -81 2595 102 3 6 chr12 83902621 83902984 -60379505 - THE1B LTR MaLR 0 364 3 25 83 0 0 chr12 83903848 83903908 -60378581 + AT_rich Low_complexity Low_complexity 1 60 0 37 39 0 0 chr12 83904419 83904470 -60378019 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr12 83905151 83905174 -60377315 + AT_rich Low_complexity Low_complexity 1 23 0 735 304 65 11 chr12 83905248 83905725 -60376764 + L1ME4a LINE L1 5603 6105 -16 312 313 188 4 chr12 83906613 83906869 -60375620 + L2 LINE L2 2462 2764 -550 198 338 70 0 chr12 83907495 83907566 -60374923 - L2 LINE L2 -190 3082 3007 28 29 0 0 chr12 83908093 83908128 -60374361 + AT_rich Low_complexity Low_complexity 1 35 0 10031 112 15 2 chr12 83908310 83909759 -60372730 - THE1A-int LTR MaLR -112 1468 1 2222 128 8 8 chr12 83909763 83910114 -60372375 - THE1A LTR MaLR -4 351 1 646 249 47 16 chr12 83910886 83911134 -60371355 - L1ME1 LINE L1 -30 6136 5802 546 301 62 13 chr12 83911143 83911439 -60371050 - L1ME1 LINE L1 -411 5710 5391 661 303 34 10 chr12 83911446 83911654 -60370835 + MIR SINE MIR 30 242 -20 1421 242 53 16 chr12 83912299 83912786 -60369703 + L1M4 LINE L1 4163 4667 -1479 2504 236 30 4 chr12 83912786 83913320 -60369169 + L1M2 LINE L1 1104 1651 -5198 * 10774 230 22 14 chr12 83913319 83916702 -60365787 + L1PA15-16 LINE L1 2045 5415 -1434 335 216 0 0 chr12 83916701 83916780 -60365709 + L1MA4A LINE L1 6078 6280 0 * 344 175 200 0 chr12 83916805 83916885 -60365604 + L1MA4A LINE L1 4751 4846 -1300 217 232 18 18 chr12 83916885 83916941 -60365548 + (TA)n Simple_repeat Simple_repeat 1 56 0 1622 171 44 25 chr12 83917008 83917450 -60365039 + L1MA4A LINE L1 5786 6297 -6 1113 250 51 3 chr12 83917581 83917897 -60364592 + L1ME LINE L1 5259 5589 -577 343 150 0 50 chr12 83917907 83917987 -60364502 - L1M4 LINE L1 -902 5244 5169 21 57 0 0 chr12 83918121 83918156 -60364333 + AT_rich Low_complexity Low_complexity 1 35 0 2343 124 30 3 chr12 83918565 83918928 -60363561 - THE1C LTR MaLR -2 373 1 10457 117 4 29 chr12 83918928 83920548 -60361941 - THE1C-int LTR MaLR 0 1580 1 2305 101 34 20 chr12 83920560 83920918 -60361571 - THE1C LTR MaLR -12 363 1 700 247 44 75 chr12 83921044 83921428 -60361061 - Charlie7 DNA MER1_type -1874 738 367 284 71 48 0 chr12 83921488 83921530 -60360959 - THE1B-int LTR MaLR -1536 44 1 245 118 0 0 chr12 83921530 83921564 -60360925 - THE1B LTR MaLR 0 364 331 252 380 42 24 chr12 83921565 83921778 -60360711 - Charlie7 DNA MER1_type -2304 308 92 1918 141 27 30 chr12 83921781 83922115 -60360374 + MER7A DNA MER2_type 2 332 -14 224 344 91 69 chr12 83922254 83922574 -60359915 - L2 LINE L2 -553 2761 2435 414 56 28 14 chr12 83923356 83923427 -60359062 + (TA)n Simple_repeat Simple_repeat 2 73 0 358 115 54 8 chr12 83923482 83923612 -60358877 + (TA)n Simple_repeat Simple_repeat 2 137 0 32 81 0 0 chr12 83923668 83923742 -60358747 + AT_rich Low_complexity Low_complexity 1 74 0 254 213 50 0 chr12 83926179 83926259 -60356230 + (TA)n Simple_repeat Simple_repeat 2 85 0 247 193 40 3 chr12 83926914 83926973 -60355516 + MIR SINE MIR 93 153 -55 27 0 0 0 chr12 83927698 83927725 -60354764 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 83929102 83929124 -60353365 + AT_rich Low_complexity Low_complexity 1 22 0 212 0 36 0 chr12 83929533 83929561 -60352928 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr12 83930632 83930656 -60351833 + (TTATG)n Simple_repeat Simple_repeat 2 25 0 1833 158 0 0 chr12 83930659 83930944 -60351545 - AluSx SINE Alu -22 290 6 22 0 0 0 chr12 83931169 83931191 -60351298 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 83931562 83931588 -60350901 + AT_rich Low_complexity Low_complexity 1 26 0 248 263 216 29 chr12 83931734 83931905 -60350584 + MER102a DNA MER1_type 128 330 0 22 0 0 0 chr12 83932040 83932062 -60350427 + AT_rich Low_complexity Low_complexity 1 22 0 238 0 53 26 chr12 83933659 83933697 -60348792 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 27 0 0 0 chr12 83934075 83934102 -60348387 + AT_rich Low_complexity Low_complexity 1 27 0 236 260 195 16 chr12 83937871 83937994 -60344495 + MIR SINE MIR 63 207 -55 284 244 24 0 chr12 83938723 83938805 -60343684 + MER94 DNA DNA 12 95 -39 38 39 0 0 chr12 83939557 83939609 -60342880 + AT_rich Low_complexity Low_complexity 1 52 0 25 51 0 0 chr12 83939766 83939805 -60342684 + AT_rich Low_complexity Low_complexity 1 39 0 378 300 225 15 chr12 83940450 83940717 -60341772 - L3 LINE CR1 -4 1573 1251 750 173 13 27 chr12 83940800 83940950 -60341539 + FRAM SINE Alu 1 147 -29 183 275 43 29 chr12 83941200 83941269 -60341220 - MIR SINE MIR -104 158 89 313 318 16 32 chr12 83944377 83944503 -60337986 + MIR SINE MIR 15 138 -124 189 299 30 0 chr12 83945106 83945173 -60337316 - MIR3 SINE MIR -25 183 115 244 277 64 43 chr12 83945622 83945716 -60336773 + L2 LINE L2 3216 3311 -2 1632 173 10 20 chr12 83947052 83947380 -60335109 - AluJo SINE Alu 0 312 7 1288 139 20 28 chr12 83948192 83948443 -60334046 + L1MA4 LINE L1 6038 6286 -14 767 251 58 0 chr12 83948527 83948718 -60333771 + MER3 DNA MER1_type 7 208 -1 261 175 0 70 chr12 83948676 83948733 -60333756 - MER3 DNA MER1_type -119 90 38 * 340 230 0 70 chr12 83948845 83948945 -60333544 - L1MC4 LINE L1 -1337 6705 6613 306 300 0 0 chr12 83948870 83948960 -60333529 + L1MC4 LINE L1 6614 6703 -1339 * 2074 110 30 10 chr12 83949544 83949845 -60332644 + AluSx SINE Alu 1 307 -5 230 0 33 0 chr12 83949845 83949875 -60332614 + (GGGAGA)n Simple_repeat Simple_repeat 4 34 0 304 276 111 70 chr12 83950020 83950219 -60332270 + Charlie8 DNA MER1_type 211 417 -2000 31 58 0 0 chr12 83950895 83950947 -60331542 + AT_rich Low_complexity Low_complexity 1 52 0 435 148 80 0 chr12 83951050 83951183 -60331306 + AluJ/FRAM SINE Alu 218 357 0 21 0 0 0 chr12 83951983 83952004 -60330485 + AT_rich Low_complexity Low_complexity 1 21 0 188 324 48 57 chr12 83955698 83955803 -60326686 - L2 LINE L2 -8 3264 3161 210 37 0 0 chr12 83956685 83956712 -60325777 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 435 38 0 0 chr12 83956826 83956879 -60325610 + (CA)n Simple_repeat Simple_repeat 1 53 0 429 284 6 59 chr12 83957114 83957283 -60325206 + MER106B DNA MER1_type 898 1057 -2 1920 199 55 62 chr12 83957507 83958069 -60324420 + L1MD1 LINE L1 5667 6224 -18 21 36 0 0 chr12 83958076 83958104 -60324385 + AT_rich Low_complexity Low_complexity 1 28 0 293 178 34 34 chr12 83960184 83960302 -60322187 + (TA)n Simple_repeat Simple_repeat 1 118 0 431 106 47 43 chr12 83960318 83960582 -60321907 + (TA)n Simple_repeat Simple_repeat 1 265 0 5509 101 16 30 chr12 83961209 83962503 -60319986 - L1PA11 LINE L1 -1 6173 4842 327 247 120 6 chr12 83963035 83963193 -60319296 + L1ME3A LINE L1 5785 5960 -204 378 293 54 28 chr12 83963218 83963451 -60319038 + L1ME3A LINE L1 5944 6161 -1 1338 201 7 52 chr12 83963460 83963768 -60318721 + AluJo SINE Alu 4 297 -5 239 254 32 0 chr12 83963983 83964046 -60318443 + GA-rich Low_complexity Low_complexity 2 66 0 1839 137 0 18 chr12 83965576 83965854 -60316635 + AluSx SINE Alu 1 273 -39 23 0 0 0 chr12 83965859 83965882 -60316607 + AT_rich Low_complexity Low_complexity 1 23 0 378 61 0 0 chr12 83966573 83966622 -60315867 + (TG)n Simple_repeat Simple_repeat 1 49 0 413 179 32 8 chr12 83967029 83967152 -60315337 + CT-rich Low_complexity Low_complexity 3 128 0 462 318 17 24 chr12 83967245 83967438 -60315051 + MIR SINE MIR 6 195 -58 21 0 0 0 chr12 83968754 83968775 -60313714 + AT_rich Low_complexity Low_complexity 1 21 0 2033 135 7 0 chr12 83968777 83969066 -60313423 + AluSx SINE Alu 1 291 -21 408 74 63 0 chr12 83969066 83969161 -60313328 + (TA)n Simple_repeat Simple_repeat 2 102 0 220 288 0 0 chr12 83969161 83969227 -60313262 - L2 LINE L2 -141 3172 3107 818 118 0 29 chr12 83969661 83969797 -60312692 + AluSg/x SINE Alu 179 310 0 726 222 45 25 chr12 83970044 83970242 -60312247 + MER105 DNA DNA 1 202 -2 22 0 0 0 chr12 83971788 83971810 -60310679 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr12 83974253 83974300 -60308189 + AT_rich Low_complexity Low_complexity 1 47 0 607 322 62 47 chr12 83974358 83974678 -60307811 + L3 LINE CR1 733 1057 -520 207 0 0 0 chr12 83974741 83974764 -60307725 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 465 302 0 7 chr12 83975483 83975622 -60306867 + MER97c DNA MER1_type? 20 157 -933 1062 345 94 38 chr12 83975805 83976720 -60305769 + L2 LINE L2 1744 2709 -605 226 178 0 0 chr12 83976795 83976840 -60305649 - L2 LINE L2 -1 3312 3268 193 311 117 29 chr12 83978178 83978281 -60304208 - L2 LINE L2 -13 3259 3148 315 313 15 0 chr12 83978595 83978662 -60303827 - L2 LINE L2 -68 3204 3137 325 327 123 48 chr12 83978968 83979237 -60303252 - L2 LINE L2 -476 2838 2550 257 309 11 0 chr12 83980022 83980116 -60302373 + (TA)n Simple_repeat Simple_repeat 1 95 0 197 339 16 0 chr12 83980625 83980687 -60301802 + MIR SINE MIR 41 103 -159 435 286 45 13 chr12 83980902 83981056 -60301433 + MIR3 SINE MIR 47 205 -3 1511 161 50 58 chr12 83984107 83984351 -60298138 - MER44D DNA MER2_type -1882 609 364 2179 120 0 3 chr12 83984351 83984651 -60297838 - AluSx SINE Alu -13 299 1 1511 161 50 58 chr12 83984651 83984748 -60297741 - MER44D DNA MER2_type -2127 364 1 191 61 30 0 chr12 83989349 83989382 -60293107 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 615 314 19 24 chr12 83989570 83989777 -60292712 - MIR SINE MIR -50 212 7 404 305 54 43 chr12 83989962 83990273 -60292216 + L2 LINE L2 2773 3084 -229 1449 210 18 73 chr12 83992904 83993300 -60289189 - MLT1A2 LTR MaLR 0 374 1 277 276 15 75 chr12 83993421 83993555 -60288934 - MIR SINE MIR -66 142 17 202 254 211 14 chr12 83997403 83997474 -60285015 + MIR SINE MIR 120 204 -58 206 203 0 17 chr12 83997601 83997660 -60284829 + (CA)n Simple_repeat Simple_repeat 1 58 0 249 128 0 0 chr12 83998273 83998320 -60284169 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 24 0 0 0 chr12 83998560 83998584 -60283905 + AT_rich Low_complexity Low_complexity 1 24 0 2229 104 3 19 chr12 83998584 83998900 -60283589 - AluY SINE Alu 0 311 1 24 32 0 0 chr12 83998952 83998983 -60283506 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr12 84001545 84001565 -60280924 + (TTA)n Simple_repeat Simple_repeat 2 21 0 215 297 90 54 chr12 84002157 84002268 -60280221 + L2 LINE L2 3199 3313 0 25 31 0 0 chr12 84003667 84003699 -60278790 + AT_rich Low_complexity Low_complexity 1 32 0 607 185 15 0 chr12 84003699 84003829 -60278660 - L1MA8 LINE L1 -3 6288 6157 21 36 0 0 chr12 84004763 84004791 -60277698 + AT_rich Low_complexity Low_complexity 1 28 0 228 143 0 0 chr12 84005099 84005141 -60277348 + (A)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr12 84005478 84005501 -60276988 + AT_rich Low_complexity Low_complexity 1 23 0 211 353 90 32 chr12 84006299 84006455 -60276034 + MIR3 SINE MIR 32 196 -12 22 0 0 0 chr12 84006805 84006827 -60275662 + AT_rich Low_complexity Low_complexity 1 22 0 290 179 0 15 chr12 84007180 84007247 -60275242 + CT-rich Low_complexity Low_complexity 2 67 0 986 179 55 50 chr12 84007260 84007478 -60275011 - AluJo SINE Alu -9 303 85 24 0 0 0 chr12 84008673 84008697 -60273792 + AT_rich Low_complexity Low_complexity 1 24 0 2059 28 0 4 chr12 84010302 84010553 -60271936 + L1PA4 LINE L1 5900 6149 -6 27 29 0 0 chr12 84011591 84011625 -60270864 + AT_rich Low_complexity Low_complexity 1 34 0 1626 109 5 0 chr12 84013045 84013265 -60269224 - AluSp SINE Alu -9 304 84 283 378 82 33 chr12 84013573 84014168 -60268321 - L2 LINE L2 -52 3220 2567 1532 182 75 68 chr12 84014194 84014623 -60267866 - MSTB1 LTR MaLR 0 432 1 752 261 27 5 chr12 84019941 84020125 -60262364 + MIR SINE MIR 40 227 -35 22 70 0 0 chr12 84020154 84020197 -60262292 + AT_rich Low_complexity Low_complexity 1 43 0 478 256 75 0 chr12 84020263 84020396 -60262093 + MIR SINE MIR 119 261 -1 382 235 39 45 chr12 84020443 84020597 -60261892 + MIR SINE MIR 111 262 0 2167 90 32 0 chr12 84020687 84020966 -60261523 + AluSg SINE Alu 1 288 -22 29 28 0 0 chr12 84021186 84021222 -60261267 + AT_rich Low_complexity Low_complexity 1 36 0 2164 106 0 23 chr12 84021286 84021588 -60260901 + AluSg SINE Alu 1 295 -15 553 137 12 62 chr12 84021982 84022077 -60260412 + Charlie5 DNA MER1_type 2411 2496 -89 1783 180 0 16 chr12 84022077 84022394 -60260095 - AluJb SINE Alu 0 312 1 553 137 12 62 chr12 84022394 84022459 -60260030 + Charlie5 DNA MER1_type 2496 2563 -22 24 0 0 0 chr12 84022952 84022976 -60259513 + AT_rich Low_complexity Low_complexity 1 24 0 309 182 0 0 chr12 84023220 84023275 -60259214 + L1MC4 LINE L1 6649 6703 -1339 231 167 0 0 chr12 84023275 84023317 -60259172 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 35 41 0 0 chr12 84023330 84023379 -60259110 + AT_rich Low_complexity Low_complexity 1 49 0 719 236 25 0 chr12 84024854 84025011 -60257478 - FRAM SINE Alu -18 158 1 1024 177 29 78 chr12 84025012 84025356 -60257133 - Charlie5 DNA MER1_type -24 2588 2262 1953 176 11 8 chr12 84025857 84026221 -60256268 - MLT1A1 LTR MaLR 0 365 1 1717 125 80 30 chr12 84029452 84029789 -60252700 + THE1C LTR MaLR 3 356 -19 1538 270 39 3 chr12 84029798 84030187 -60252302 - MLT1E2 LTR MaLR 0 626 224 394 242 167 23 chr12 84030214 84030346 -60252143 - MLT1E2 LTR MaLR -503 151 1 * 473 287 14 0 chr12 84030346 84030487 -60252002 + Charlie8 DNA MER1_type 93 235 -2182 227 339 0 0 chr12 84031404 84031463 -60251026 + MIR SINE MIR 2 60 -202 1133 226 12 77 chr12 84031468 84031804 -60250685 + MLT1A1 LTR MaLR 2 315 -50 769 192 19 70 chr12 84031894 84032217 -60250272 + MLT1A2 LTR MaLR 2 363 -2 258 313 223 6 chr12 84032219 84032385 -60250104 + MIR SINE MIR 61 262 0 228 385 0 12 chr12 84033770 84033853 -60248636 + MIR SINE MIR 21 102 -160 2683 184 30 35 chr12 84033860 84034403 -60248086 + MLT1F1 LTR MaLR 1 540 -27 865 208 49 6 chr12 84034476 84034659 -60247830 - MER3 DNA MER1_type -2 207 17 1254 207 45 36 chr12 84034660 84034969 -60247520 - AluJo SINE Alu 0 312 1 23 68 0 0 chr12 84035070 84035114 -60247375 + AT_rich Low_complexity Low_complexity 1 44 0 238 36 0 0 chr12 84037199 84037227 -60245262 - Alu SINE Alu -210 92 65 1404 136 14 5 chr12 84037227 84037447 -60245042 + AluSp SINE Alu 81 302 -11 2311 92 83 6 chr12 84037938 84038287 -60244202 + MER51B LTR ERV1 2 377 0 1844 213 70 19 chr12 84038895 84039379 -60243110 - MER67D LTR ERV1 -4 510 2 291 367 110 43 chr12 84040672 84040972 -60241517 + L2 LINE L2 2651 2970 -344 632 306 80 44 chr12 84041050 84041140 -60241349 - L2 LINE L2 -6 3307 3222 462 49 0 0 chr12 84041140 84041201 -60241288 + (CA)n Simple_repeat Simple_repeat 2 62 0 632 306 80 44 chr12 84041201 84041600 -60240889 - L2 LINE L2 -91 3222 2541 1804 147 125 52 chr12 84041633 84042019 -60240470 + MLT2C2 LTR ERVL 5 361 -103 279 0 0 0 chr12 84042019 84042050 -60240439 + (CA)n Simple_repeat Simple_repeat 2 32 0 1804 147 125 52 chr12 84042050 84042063 -60240426 + MLT2C2 LTR ERVL 361 372 -92 198 0 0 0 chr12 84042063 84042085 -60240404 + (TG)n Simple_repeat Simple_repeat 1 22 0 1804 147 125 52 chr12 84042085 84042107 -60240382 + MLT2C2 LTR ERVL 372 458 -6 458 250 135 16 chr12 84042120 84042312 -60240177 - L2 LINE L2 -856 2458 2244 574 293 131 4 chr12 84042721 84042980 -60239509 - L2 LINE L2 -1067 2247 1956 378 350 36 36 chr12 84043003 84043223 -60239266 + L2 LINE L2 2351 2570 -744 186 43 0 0 chr12 84043435 84043458 -60239031 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 995 79 0 0 chr12 84043570 84043697 -60238792 - THE1C LTR MaLR 0 375 249 274 85 0 0 chr12 84043695 84043742 -60238747 - LTR66 LTR ERVL -170 440 394 * 274 192 0 20 chr12 84043785 84043884 -60238605 + (TA)n Simple_repeat Simple_repeat 2 98 0 228 67 0 0 chr12 84044535 84044565 -60237924 + (T)n Simple_repeat Simple_repeat 1 30 0 447 222 124 0 chr12 84045351 84045504 -60236985 - L1MD3 LINE L1 0 7995 7824 * 2102 243 51 17 chr12 84045499 84046190 -60236299 - L1MC4a LINE L1 -1841 5967 5254 578 279 0 41 chr12 84046472 84046644 -60235845 - LTR16C LTR ERVL 0 491 327 562 300 66 84 chr12 84048409 84048696 -60233793 + L2 LINE L2 2745 3029 -284 1987 201 45 20 chr12 84048696 84049189 -60233300 + MLT1D LTR MaLR 1 505 0 562 300 66 84 chr12 84049189 84049392 -60233097 + L2 LINE L2 3029 3234 -79 2346 82 0 25 chr12 84050231 84050550 -60231939 - AluY SINE Alu 0 311 1 445 324 38 86 chr12 84051919 84052638 -60229851 + L2 LINE L2 1789 2472 -842 2321 91 0 10 chr12 84053885 84054193 -60228296 + AluSx SINE Alu 1 305 -7 23 33 0 0 chr12 84056328 84056358 -60226131 + AT_rich Low_complexity Low_complexity 1 30 0 374 235 0 0 chr12 84057388 84057469 -60225020 - MIR SINE MIR -20 242 162 749 306 101 40 chr12 84057474 84057918 -60224571 + MLT1J LTR MaLR 1 471 -40 372 296 59 22 chr12 84057951 84058086 -60224403 - MIR SINE MIR -93 169 30 38855 67 11 25 chr12 84058169 84062458 -60220031 - L1PA5 LINE L1 0 6154 1842 1027 101 0 0 chr12 84062458 84062596 -60219893 - AluYa8 SINE Alu -8 302 165 38855 67 11 25 chr12 84062596 84064403 -60218086 - L1PA5 LINE L1 -4312 1842 11 383 377 55 51 chr12 84065078 84065351 -60217138 + L2 LINE L2 2986 3259 -13 230 309 0 0 chr12 84067258 84067326 -60215163 + (TG)n Simple_repeat Simple_repeat 1 68 0 282 205 39 13 chr12 84067730 84067808 -60214681 - MLT1I LTR MaLR -22 387 308 650 320 91 46 chr12 84067909 84068403 -60214086 + L2 LINE L2 2551 3077 -195 2324 65 3 0 chr12 84068582 84068873 -60213616 + AluY SINE Alu 1 292 -19 4403 92 25 6 chr12 84069458 84070142 -60212347 - L1P LINE L1 -2454 3692 2996 21 0 0 0 chr12 84070630 84070651 -60211838 + AT_rich Low_complexity Low_complexity 1 21 0 343 244 173 32 chr12 84071406 84071562 -60210927 + MER5A DNA MER1_type 8 185 -4 853 231 68 21 chr12 84071598 84071832 -60210657 + MIR SINE MIR 15 259 -3 200 286 48 71 chr12 84072069 84072153 -60210336 + MIR SINE MIR 11 92 -170 2094 252 81 14 chr12 84072219 84073148 -60209341 - L1M4 LINE L1 -1095 5051 4061 307 273 57 0 chr12 84073589 84073677 -60208812 + L2 LINE L2 3179 3271 -1 21 0 0 0 chr12 84073988 84074009 -60208480 + AT_rich Low_complexity Low_complexity 1 21 0 335 250 111 17 chr12 84074059 84074239 -60208250 - L1ME3 LINE L1 -286 5876 5680 302 277 60 21 chr12 84074440 84074725 -60207764 - L1ME3 LINE L1 -747 5399 5104 487 282 63 20 chr12 84074745 84075000 -60207489 - L1ME3 LINE L1 -1406 4740 4475 756 207 7 0 chr12 84075142 84075309 -60207180 - FRAM SINE Alu 0 174 7 405 272 98 93 chr12 84075564 84076110 -60206379 + MLT1H1 LTR MaLR 14 550 -5 385 278 109 67 chr12 84076114 84076427 -60206062 - L1ME3 LINE L1 -2040 4106 3781 410 302 85 79 chr12 84076966 84077082 -60205407 - L1ME3 LINE L1 -3154 2992 2878 2039 146 0 0 chr12 84077082 84077384 -60205105 - AluSx SINE Alu -7 305 4 410 302 85 79 chr12 84077384 84077427 -60205062 - L1ME3 LINE L1 -3268 2878 2837 1967 127 3 38 chr12 84077427 84077743 -60204746 - AluSg SINE Alu -5 305 1 410 302 85 79 chr12 84077743 84078275 -60204214 - L1ME3 LINE L1 -3309 2837 2296 21 0 0 0 chr12 84078300 84078321 -60204168 + AT_rich Low_complexity Low_complexity 1 21 0 10931 210 105 23 chr12 84078494 84083318 -60199171 - L1PA15 LINE L1 0 6816 2388 2460 132 6 3 chr12 84083318 84083681 -60198808 + THE1B LTR MaLR 1 364 0 9921 113 49 9 chr12 84083681 84085200 -60197289 + THE1B-int LTR MaLR 1 1580 0 2300 150 11 3 chr12 84085200 84085561 -60196928 + THE1B LTR MaLR 1 364 0 10931 210 105 23 chr12 84085561 84085786 -60196703 - L1PA15 LINE L1 -4427 2389 1326 1655 345 17 42 chr12 84085797 84086641 -60195848 - L1PA15 LINE L1 -5867 920 98 246 265 0 0 chr12 84086816 84086865 -60195624 - L1PA15 LINE L1 -6738 49 1 294 300 90 105 chr12 84088088 84088478 -60194011 - MLT1K LTR MaLR -17 571 188 1878 161 3 0 chr12 84088736 84089034 -60193455 + AluSx SINE Alu 4 302 -10 413 293 153 18 chr12 84089942 84090171 -60192318 + MIR SINE MIR 1 260 -2 28 0 0 0 chr12 84091978 84092006 -60190483 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 84092032 84092061 -60190428 + AT_rich Low_complexity Low_complexity 1 29 0 194 386 112 11 chr12 84094338 84094605 -60187884 + L2 LINE L2 2897 3190 -123 1149 91 7 0 chr12 84096286 84096440 -60186049 - AluY SINE Alu 0 311 157 22 35 0 0 chr12 84098258 84098287 -60184202 + AT_rich Low_complexity Low_complexity 1 29 0 2942 158 40 23 chr12 84098905 84099423 -60183066 + MER1A DNA MER1_type 1 527 0 228 143 0 0 chr12 84100872 84100914 -60181575 + (A)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr12 84101251 84101274 -60181215 + AT_rich Low_complexity Low_complexity 1 23 0 206 365 90 32 chr12 84102072 84102228 -60180261 + MIR3 SINE MIR 32 196 -12 24 0 0 0 chr12 84103333 84103357 -60179132 + AT_rich Low_complexity Low_complexity 1 24 0 186 324 34 89 chr12 84103590 84103769 -60178720 + L2 LINE L2 2915 3083 -189 23 0 0 0 chr12 84104867 84104890 -60177599 + AT_rich Low_complexity Low_complexity 1 23 0 34 24 0 0 chr12 84105467 84105508 -60176981 + AT_rich Low_complexity Low_complexity 1 41 0 989 214 120 41 chr12 84106457 84106724 -60175765 - AluJo SINE Alu -14 288 1 641 253 62 34 chr12 84107900 84108078 -60174411 - MER21B LTR ERV1 -396 467 285 1063 193 147 11 chr12 84108081 84108346 -60174143 + MER21B LTR ERV1 501 801 -62 218 330 44 22 chr12 84108428 84108519 -60173970 - L2 LINE L2 -193 3079 2987 293 329 121 0 chr12 84108805 84108945 -60173544 - MLT1K LTR MaLR -163 425 269 * 344 295 77 33 chr12 84108941 84109124 -60173365 - MLT1K LTR MaLR -217 371 181 196 296 157 0 chr12 84110609 84110717 -60171772 + MIR SINE MIR 49 173 -89 217 270 122 14 chr12 84111150 84111224 -60171265 + L2 LINE L2 2182 2263 -1051 311 267 23 12 chr12 84111255 84111341 -60171148 - L2 LINE L2 0 3313 3227 202 351 35 35 chr12 84111345 84111519 -60170970 + L2 LINE L2 2329 2502 -812 237 250 129 71 chr12 84112409 84112549 -60169940 - L2 LINE L2 0 3313 3166 278 274 75 38 chr12 84112816 84112922 -60169567 - L2 LINE L2 -5 3308 3199 235 288 50 12 chr12 84113361 84113441 -60169048 + MIR SINE MIR 104 186 -76 546 278 214 24 chr12 84113601 84113954 -60168535 + L2 LINE L2 2597 3016 -297 212 222 56 19 chr12 84114893 84114947 -60167542 + L2 LINE L2 3217 3272 0 2121 200 26 7 chr12 84115033 84115492 -60166997 - MER45B DNA AcHobo -92 948 481 786 308 31 0 chr12 84115502 84115729 -60166760 - MER45B DNA AcHobo -806 234 1 415 225 75 17 chr12 84115849 84115969 -60166520 + MIR SINE MIR 50 176 -86 345 296 82 15 chr12 84116702 84116837 -60165652 + L2 LINE L2 2644 2787 -527 453 320 126 36 chr12 84116915 84117305 -60165184 + L2 LINE L2 2887 3311 -2 416 281 129 6 chr12 84118026 84118197 -60164292 + MER58 DNA MER1_type 1 192 -2228 508 241 92 92 chr12 84118263 84118512 -60163977 + MER39 LTR ERV1 250 498 -209 2843 100 24 72 chr12 84118513 84118886 -60163603 + MER4B LTR ERV1 126 469 -141 2219 111 0 3 chr12 84118886 84119184 -60163305 + AluSc SINE Alu 2 298 -11 2843 100 24 72 chr12 84119184 84119320 -60163169 + MER4B LTR ERV1 469 610 0 811 86 16 31 chr12 84119360 84119488 -60163001 + LTR23 LTR ERV1 283 408 -29 3461 160 13 18 chr12 84119531 84119619 -60162870 + MER50 LTR ERV1 119 206 -528 5526 68 61 1 chr12 84119619 84120355 -60162134 - LTR17 LTR ERV1 0 780 1 3461 160 13 18 chr12 84120355 84120885 -60161604 + MER50 LTR ERV1 206 734 0 925 287 102 27 chr12 84122761 84123252 -60159237 - L2 LINE L2 -58 3255 2727 287 362 123 0 chr12 84124732 84124870 -60157619 - MIR3 SINE MIR -11 197 43 2298 68 0 0 chr12 84124909 84125221 -60157268 + AluY SINE Alu 1 312 0 644 199 145 22 chr12 84125633 84125836 -60156653 + L1MD3 LINE L1 6133 7985 -10 296 234 0 0 chr12 84125879 84125943 -60156546 + Charlie4 DNA MER1_type 1898 1961 0 34 42 0 0 chr12 84126485 84126533 -60155956 + AT_rich Low_complexity Low_complexity 1 48 0 1381 255 69 21 chr12 84126994 84127430 -60155059 - MLT1C LTR MaLR -3 464 8 197 281 6 129 chr12 84127624 84127795 -60154694 - MIR SINE MIR -65 197 48 416 215 20 13 chr12 84129048 84129197 -60153292 + CT-rich Low_complexity Low_complexity 3 152 0 265 360 23 0 chr12 84129347 84129433 -60153056 - L2 LINE L2 0 3272 3185 894 278 93 31 chr12 84129915 84130497 -60151992 + L2 LINE L2 2678 3308 -5 262 267 8 133 chr12 84132641 84132761 -60149728 - L2 LINE L2 0 3313 3209 3095 99 27 11 chr12 84133003 84133449 -60149040 - MLT2A2 LTR ERVL 0 453 1 357 332 82 45 chr12 84134410 84134786 -60147703 + L1MEd LINE L1 868 1257 -4862 338 310 120 18 chr12 84134876 84135150 -60147339 + HAL1b LINE L1 406 707 -641 1185 212 119 44 chr12 84135551 84135961 -60146528 - LTR47B LTR ERVL -2 441 1 325 272 87 0 chr12 84135974 84136077 -60146412 - MIR SINE MIR -26 236 125 322 345 91 48 chr12 84136200 84136365 -60146124 + L2 LINE L2 3101 3272 0 21 36 0 0 chr12 84136655 84136683 -60145806 + AT_rich Low_complexity Low_complexity 1 28 0 242 277 147 59 chr12 84138219 84138457 -60144032 - MLT1J LTR MaLR -114 397 139 15809 177 79 17 chr12 84139229 84143404 -60139085 + L1MA3 LINE L1 2 4763 -2961 1700 176 3 16 chr12 84143404 84143710 -60138779 - AluJb SINE Alu -8 304 3 15809 177 79 17 chr12 84143710 84146309 -60136180 + L1MA3 LINE L1 4763 7201 -523 1876 65 0 8 chr12 84146314 84146562 -60135927 + L1PA6 LINE L1 5909 6154 0 2750 142 26 42 chr12 84146798 84146813 -60135676 + L1MA3 LINE L1 7188 7202 -522 2157 112 100 0 chr12 84146813 84147144 -60135345 + THE1B LTR MaLR 1 364 0 2750 142 26 42 chr12 84147144 84147671 -60134818 + L1MA3 LINE L1 7202 7721 -3 264 351 61 34 chr12 84147989 84148137 -60134352 - L2 LINE L2 -568 2746 2595 336 356 144 22 chr12 84149990 84150524 -60131965 + L2 LINE L2 2298 2896 -418 1553 218 60 52 chr12 84150962 84151463 -60131026 - MLT1D LTR MaLR 0 505 1 32 0 0 0 chr12 84151582 84151614 -60130875 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr12 84152696 84152718 -60129771 + (ATG)n Simple_repeat Simple_repeat 3 24 0 1651 279 111 13 chr12 84153551 84154020 -60128469 + MLT1E LTR MaLR 13 527 -66 3317 179 57 10 chr12 84154041 84154747 -60127742 - L1MD1 LINE L1 -17 6619 5881 227 204 10 87 chr12 84154752 84154855 -60127634 - L1MC4 LINE L1 -1339 6703 6609 1044 217 32 46 chr12 84154890 84155171 -60127318 - AluJo SINE Alu -35 277 1 1661 239 48 38 chr12 84155176 84155844 -60126645 - L1MD1 LINE L1 -745 5795 5179 552 242 0 16 chr12 84155867 84155995 -60126494 - L1MD1 LINE L1 -6400 140 15 2172 123 131 13 chr12 84156262 84156645 -60125844 - MSTA LTR MaLR 0 428 1 319 298 107 51 chr12 84156654 84156832 -60125657 - MER5A DNA MER1_type -1 188 1 183 289 0 0 chr12 84157111 84157163 -60125326 + MIR SINE MIR 153 204 -58 186 171 0 0 chr12 84157817 84157858 -60124631 + (CA)n Simple_repeat Simple_repeat 2 42 0 452 297 41 57 chr12 84159571 84159817 -60122672 + L2 LINE L2 3034 3275 -38 1681 161 55 73 chr12 84160891 84161288 -60121201 + MLT1B LTR MaLR 1 390 0 198 280 20 0 chr12 84161587 84161637 -60120852 - MIR SINE MIR -138 70 20 237 224 0 0 chr12 84164110 84164159 -60118330 + CT-rich Low_complexity Low_complexity 1 49 0 187 312 202 0 chr12 84164727 84164836 -60117653 - L2 LINE L2 0 3313 3183 190 256 37 165 chr12 84166004 84166168 -60116321 + MIR SINE MIR 34 176 -86 2039 153 0 25 chr12 84166282 84166602 -60115887 - AluSx SINE Alu 0 312 1 22 35 0 0 chr12 84166650 84166679 -60115810 + AT_rich Low_complexity Low_complexity 1 29 0 2041 132 0 24 chr12 84167281 84167622 -60114867 - L1PA15 LINE L1 -19 6146 5814 1637 103 19 0 chr12 84167640 84168056 -60114433 - L1PA13 LINE L1 0 6163 5583 762 134 8 0 chr12 84168057 84168176 -60114313 + L1PA13 LINE L1 5459 5578 -587 287 297 229 40 chr12 84168215 84168390 -60114099 - MIR SINE MIR -8 254 47 200 375 52 10 chr12 84169104 84169200 -60113289 + L2 LINE L2 3208 3307 -6 238 294 147 0 chr12 84169488 84169597 -60112892 - MIR SINE MIR -69 193 69 23 0 0 0 chr12 84169908 84169931 -60112558 + AT_rich Low_complexity Low_complexity 1 23 0 203 250 12 88 chr12 84170373 84170453 -60112036 + L2 LINE L2 3121 3194 -78 21 71 0 0 chr12 84171165 84171207 -60111282 + AT_rich Low_complexity Low_complexity 1 42 0 819 306 57 20 chr12 84171670 84171971 -60110518 + MLT1I LTR MaLR 98 409 0 2155 127 13 0 chr12 84174463 84174770 -60107719 + AluSx SINE Alu 1 311 -1 1489 180 38 73 chr12 84175151 84175468 -60107021 - AluSx SINE Alu -4 308 3 242 198 62 0 chr12 84175468 84175549 -60106940 - MER3 DNA MER1_type 0 2588 2503 533 203 68 20 chr12 84175595 84175743 -60106746 - MER3 DNA MER1_type -82 127 20 208 319 53 11 chr12 84176937 84177031 -60105458 - MIR SINE MIR -109 153 56 207 88 0 0 chr12 84177519 84177553 -60104936 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 381 22 0 0 chr12 84177757 84177803 -60104686 + (TG)n Simple_repeat Simple_repeat 1 46 0 864 144 0 0 chr12 84177804 84177929 -60104560 - AluSg/x SINE Alu -32 280 156 1154 189 77 5 chr12 84178082 84178392 -60104097 + MER33 DNA MER1_type 1 323 -1 1254 209 29 52 chr12 84178401 84178750 -60103739 - MER58B DNA MER1_type 0 341 1 217 328 0 52 chr12 84179242 84179300 -60103189 - L2 LINE L2 -95 3177 3123 2244 93 3 0 chr12 84179326 84179617 -60102872 + AluSp SINE Alu 1 292 -21 470 255 181 0 chr12 84179657 84179806 -60102683 - MER5A DNA MER1_type -2 187 12 395 242 50 42 chr12 84179807 84179927 -60102562 + L2 LINE L2 3192 3312 -1 233 313 0 0 chr12 84180443 84180507 -60101982 - MIR3 SINE MIR -5 203 140 319 213 12 25 chr12 84180733 84180813 -60101676 - L3 LINE CR1 -257 1320 1242 512 345 117 32 chr12 84180883 84181445 -60101044 - L2 LINE L2 -33 3239 2631 244 231 19 0 chr12 84181503 84181555 -60100934 - MER5A DNA MER1_type -92 97 45 359 280 91 11 chr12 84181571 84181746 -60100743 - L2 LINE L2 -707 2607 2419 639 336 24 12 chr12 84183036 84183283 -60099206 + MLT1J2 LTR MaLR 34 283 -167 200 311 8 25 chr12 84184116 84184238 -60098251 + GA-rich Low_complexity Low_complexity 4 123 0 237 300 0 0 chr12 84184486 84184576 -60097913 - L1MC4 LINE L1 -1339 6703 6614 256 384 65 34 chr12 84184709 84184972 -60097517 + L2 LINE L2 2581 2851 -463 487 291 100 39 chr12 84185139 84185369 -60097120 - MIR SINE MIR -11 251 8 218 243 43 29 chr12 84185397 84185467 -60097022 + L2 LINE L2 3165 3235 -78 234 351 78 32 chr12 84186868 84187022 -60095467 - MIR3 SINE MIR -31 177 17 1453 216 124 6 chr12 84188361 84188708 -60093781 - MSTD LTR MaLR -8 388 1 302 298 41 25 chr12 84188741 84188862 -60093627 - MLT1J LTR MaLR -316 195 73 229 195 0 0 chr12 84189010 84189051 -60093438 - MLT1J1 LTR MaLR -156 290 250 22 0 0 0 chr12 84190479 84190501 -60091988 + AT_rich Low_complexity Low_complexity 1 22 0 1071 278 51 29 chr12 84190735 84191162 -60091327 - MLT1J LTR MaLR -35 476 3 326 258 106 0 chr12 84191168 84191300 -60091189 + MER112 DNA MER1_type 80 225 -35 23 0 0 0 chr12 84192111 84192134 -60090355 + AT_rich Low_complexity Low_complexity 1 23 0 190 305 34 0 chr12 84193007 84193066 -60089423 + L2 LINE L2 3248 3308 -5 1087 142 22 6 chr12 84194299 84194482 -60088007 - L1M2 LINE L1 -513 5787 5602 * 2176 153 13 3 chr12 84194481 84194872 -60087617 + L1 LINE L1 4741 5135 -1011 185 276 134 60 chr12 84194884 84195018 -60087471 - L2 LINE L2 0 3272 3129 1789 203 18 6 chr12 84195029 84195369 -60087120 - MER2 DNA MER2_type 0 344 1 181 304 65 33 chr12 84195524 84195616 -60086873 - L2 LINE L2 -671 2643 2549 1481 318 45 58 chr12 84195832 84196505 -60085984 + MER115 DNA AcHobo 13 676 -17 500 286 89 33 chr12 84196648 84197186 -60085303 + L1MEc LINE L1 1156 1670 -860 1466 177 73 58 chr12 84197301 84197645 -60084844 + MLT1B LTR MaLR 1 349 -41 1399 202 32 7 chr12 84198163 84198445 -60084044 + AluJo SINE Alu 1 289 -13 23 68 0 0 chr12 84198497 84198541 -60083948 + AT_rich Low_complexity Low_complexity 1 44 0 2036 148 36 36 chr12 84199419 84199777 -60082712 + THE1B LTR MaLR 7 364 0 11023 111 3 21 chr12 84199778 84201359 -60081130 + THE1B-int LTR MaLR 2 1553 -27 2254 130 30 25 chr12 84201418 84201780 -60080709 + THE1B LTR MaLR 1 364 0 531 188 0 117 chr12 84201780 84201908 -60080581 - MER20 DNA MER1_type -106 113 1 660 254 109 58 chr12 84202362 84202535 -60079954 - L1MC5 LINE L1 -36 7925 7762 1724 107 95 0 chr12 84202535 84202788 -60079701 - AluSq SINE Alu -13 300 24 660 254 109 58 chr12 84202788 84203229 -60079260 - L1MC5 LINE L1 -199 7762 7280 1463 129 23 4 chr12 84203499 84203755 -60078734 - L1MA1 LINE L1 0 6302 6042 288 306 30 8 chr12 84203778 84203912 -60078577 + MARNA DNA Mariner 434 570 -16 1769 183 10 37 chr12 84204857 84205240 -60077249 + MER93b LTR ERV1 1 373 0 225 354 60 60 chr12 84205380 84205716 -60076773 - L2 LINE L2 -347 2967 2632 186 43 0 0 chr12 84205954 84205977 -60076512 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 25 0 0 0 chr12 84206296 84206321 -60076168 + AT_rich Low_complexity Low_complexity 1 25 0 282 348 93 49 chr12 84206944 84207104 -60075385 - L2 LINE L2 0 3313 3141 2097 125 7 0 chr12 84207104 84207407 -60075082 - AluSx SINE Alu -7 305 1 282 348 93 49 chr12 84207407 84207450 -60075039 - L2 LINE L2 -172 3141 3101 1580 176 22 0 chr12 84207514 84207781 -60074708 + AluJo SINE Alu 9 281 -31 550 305 56 19 chr12 84207810 84208023 -60074466 - L2 LINE L2 -247 3066 2846 1189 268 25 6 chr12 84208101 84208418 -60074071 - MER74B LTR ERVL -94 528 206 2204 85 0 0 chr12 84208568 84208886 -60073603 + AluY SINE Alu 4 321 0 559 270 18 31 chr12 84208891 84209054 -60073435 - L2 LINE L2 -461 2853 2693 2045 130 0 0 chr12 84209056 84209340 -60073149 + AluSx SINE Alu 1 284 -28 1868 270 130 50 chr12 84209364 84209775 -60072714 - L2 LINE L2 -920 2394 2018 1981 117 0 7 chr12 84209775 84210048 -60072441 - AluSp SINE Alu -30 283 13 1868 270 130 50 chr12 84210048 84210603 -60071886 - L2 LINE L2 -1296 2018 1350 346 352 79 55 chr12 84211059 84211312 -60071177 - L2 LINE L2 -359 2955 2697 27 0 0 0 chr12 84212227 84212254 -60070235 + AT_rich Low_complexity Low_complexity 1 27 0 516 319 46 12 chr12 84212898 84213207 -60069282 + MLT1L LTR MaLR 200 575 -40 2156 146 69 28 chr12 84213797 84214187 -60068302 - MSTB LTR MaLR -20 406 1 430 374 50 16 chr12 84214424 84214890 -60067599 + MLT1J LTR MaLR 5 511 0 336 281 37 0 chr12 84215003 84215085 -60067404 - MLT1J LTR MaLR -426 85 1 1758 163 7 3 chr12 84215157 84215440 -60067049 - AluSx SINE Alu -23 289 6 483 242 5 113 chr12 84216129 84216323 -60066166 - MER5B DNA MER1_type -5 173 1 695 216 6 25 chr12 84216520 84216682 -60065807 + MER3 DNA MER1_type 10 168 -41 472 292 82 12 chr12 84217200 84217371 -60065118 - MIR SINE MIR -18 244 62 395 247 94 29 chr12 84218418 84218608 -60063881 - MIR SINE MIR -13 249 44 749 275 36 90 chr12 84219250 84219773 -60062716 + L1MC/D LINE L1 5265 5759 -2049 410 299 108 47 chr12 84220681 84220895 -60061594 - MIR SINE MIR -30 232 6 1529 243 113 18 chr12 84220923 84221375 -60061114 - LTR40a LTR ERVL -24 495 1 871 175 25 0 chr12 84221456 84221616 -60060873 + L1 LINE L1 5 168 -5160 * 1650 221 38 33 chr12 84221607 84222235 -60060254 + L1 LINE L1 2934 3564 -2764 21 36 0 0 chr12 84222333 84222361 -60060128 + AT_rich Low_complexity Low_complexity 1 28 0 1901 97 115 35 chr12 84222903 84223242 -60059247 + MER4E LTR ERV1 1 366 -413 231 92 64 12 chr12 84223242 84223459 -60059030 + AluSg SINE Alu 3 296 -5 * 2698 79 4 23 chr12 84223454 84223567 -60058922 + MER4E LTR ERV1 352 466 -300 2033 126 14 0 chr12 84223567 84223852 -60058637 - AluSx SINE Alu -23 289 1 2698 79 4 23 chr12 84223852 84224175 -60058314 + MER4E LTR ERV1 466 766 0 2176 84 3 3 chr12 84225497 84225802 -60056687 - AluSp SINE Alu 0 305 1 482 287 67 30 chr12 84226516 84226551 -60055938 + MLT1J LTR MaLR 1 33 -478 2564 45 0 10 chr12 84226551 84226865 -60055624 - AluY SINE Alu 0 311 1 482 287 67 30 chr12 84226865 84226993 -60055496 + MLT1J LTR MaLR 33 170 -341 380 298 112 31 chr12 84227473 84227634 -60054855 - L3 LINE CR1 -320 1257 1084 28 0 0 0 chr12 84227923 84227951 -60054538 + AT_rich Low_complexity Low_complexity 1 28 0 209 271 51 93 chr12 84227960 84228078 -60054411 - L3 LINE CR1 -909 668 556 329 307 0 0 chr12 84229117 84229205 -60053284 + L1MC4 LINE L1 6616 6703 -1339 189 154 0 0 chr12 84229206 84229245 -60053244 + (TA)n Simple_repeat Simple_repeat 2 40 0 208 372 54 8 chr12 84229493 84229622 -60052867 + MIR SINE MIR 11 145 -117 12460 206 64 11 chr12 84230392 84230856 -60051633 - L1MA4 LINE L1 -5 6477 6039 387 0 0 0 chr12 84230856 84230899 -60051590 + (TG)n Simple_repeat Simple_repeat 2 44 0 12460 206 64 11 chr12 84230899 84236576 -60045913 - L1MA4 LINE L1 -443 6039 1 1278 210 72 35 chr12 84236874 84237250 -60045239 - MLT1B LTR MaLR 0 390 1 209 294 128 37 chr12 84237583 84237692 -60044797 - L2 LINE L2 -7 3306 3188 647 249 53 11 chr12 84237755 84237944 -60044545 + L1MB7 LINE L1 5981 6177 -7 289 355 37 9 chr12 84238136 84238243 -60044246 + MIR SINE MIR 2 111 -151 321 287 46 0 chr12 84238421 84238508 -60043981 + MIR SINE MIR 53 143 -119 651 286 128 50 chr12 84238508 84238957 -60043532 - MLT1H1 LTR MaLR 0 555 71 2903 141 50 95 chr12 84238957 84239597 -60042892 + LTR18B LTR ERVL 4 614 0 249 296 84 63 chr12 84239716 84239858 -60042631 - MLT1H1-int LTR MaLR -25 1346 1202 209 294 212 0 chr12 84240191 84240276 -60042213 + L2 LINE L2 3169 3271 -1 1563 128 62 45 chr12 84240995 84241284 -60041205 - AluSx SINE Alu -18 294 1 941 184 52 0 chr12 84241438 84241612 -60040877 - MER5A DNA MER1_type -3 186 4 2048 77 6 100 chr12 84241681 84242020 -60040469 - AluY SINE Alu -4 307 1 269 222 63 0 chr12 84242021 84242084 -60040405 + MER21B LTR ERV1 650 716 -147 4984 179 24 22 chr12 84242102 84243415 -60039074 - L1MA4 LINE L1 -14 6286 4970 302 322 43 0 chr12 84243898 84244013 -60038476 + MIR SINE MIR 70 189 -73 21 57 0 0 chr12 84244091 84244126 -60038363 + AT_rich Low_complexity Low_complexity 1 35 0 347 282 164 23 chr12 84244504 84244724 -60037765 - MIR SINE MIR 0 262 12 1388 234 81 62 chr12 84245848 84246319 -60036170 - MLT1D LTR MaLR -18 487 8 213 234 13 39 chr12 84247559 84247636 -60034853 + CT-rich Low_complexity Low_complexity 4 78 0 226 350 48 10 chr12 84249410 84249513 -60032976 - L2 LINE L2 -609 2705 2599 330 264 8 74 chr12 84250114 84250235 -60032254 - MIR SINE MIR -76 186 74 21 0 0 0 chr12 84251062 84251083 -60031406 + AT_rich Low_complexity Low_complexity 1 21 0 182 360 43 25 chr12 84251104 84251265 -60031224 - MIR SINE MIR -98 164 1 331 150 67 0 chr12 84252266 84252326 -60030163 - L2 LINE L2 -6 3307 3244 286 333 44 7 chr12 84253023 84253158 -60029331 - MIR SINE MIR -2 260 121 336 302 101 25 chr12 84253256 84253415 -60029074 + MIR SINE MIR 80 250 -12 2160 77 17 24 chr12 84253478 84253775 -60028714 - AluSg SINE Alu -15 295 1 21 57 0 0 chr12 84254116 84254151 -60028338 + AT_rich Low_complexity Low_complexity 1 35 0 279 0 0 0 chr12 84254817 84254848 -60027641 + (TG)n Simple_repeat Simple_repeat 2 32 0 273 343 69 0 chr12 84254949 84255051 -60027438 + L2 LINE L2 3196 3304 -9 1147 132 6 0 chr12 84255858 84256032 -60026457 + MSTB1 LTR MaLR 258 432 0 323 294 113 17 chr12 84257449 84257626 -60024863 - L1ME LINE L1 -301 5820 5627 11557 182 74 36 chr12 84257626 84258691 -60023798 + L1MA6 LINE L1 2157 3180 -3120 2034 131 16 45 chr12 84258691 84259066 -60023423 - THE1B LTR MaLR 0 364 1 11557 182 74 36 chr12 84259066 84261990 -60020499 + L1MA6 LINE L1 3180 6300 0 318 345 59 0 chr12 84262072 84262191 -60020298 + L2 LINE L2 3147 3272 0 329 292 52 45 chr12 84262371 84262525 -60019964 + MIR SINE MIR 64 218 -44 321 244 128 28 chr12 84263889 84264069 -60018420 + MER113 DNA MER1_type? 321 518 -3 198 328 0 0 chr12 84264353 84264414 -60018075 - MER5A DNA MER1_type 0 189 129 405 322 39 56 chr12 84264507 84264740 -60017749 + MIR SINE MIR 21 249 -13 1224 156 27 62 chr12 84264883 84265140 -60017349 + MSTB1 LTR MaLR 1 248 -184 38 22 0 0 chr12 84265597 84265642 -60016847 + AT_rich Low_complexity Low_complexity 1 45 0 301 298 18 18 chr12 84266252 84266366 -60016123 + L1ME3A LINE L1 53 166 -5953 375 307 76 80 chr12 84266712 84267187 -60015302 + L1ME3A LINE L1 597 1069 -5050 317 290 89 24 chr12 84267254 84267423 -60015066 + L1ME3A LINE L1 4504 4683 -1446 2041 182 6 0 chr12 84267662 84268024 -60014465 - MLT1A1 LTR MaLR -1 364 1 894 19 0 9 chr12 84268623 84268731 -60013758 - L1PA4 LINE L1 -211 5944 5838 361 96 0 0 chr12 84268731 84268776 -60013713 + L1PA6 LINE L1 6099 6150 -4 24 67 0 0 chr12 84268778 84268823 -60013666 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr12 84269838 84269860 -60012629 + AT_rich Low_complexity Low_complexity 1 22 0 367 211 13 0 chr12 84269976 84270052 -60012437 + L3 LINE CR1 1494 1570 -7 351 336 57 24 chr12 84270303 84270514 -60011975 + MLT1J2 LTR MaLR 1 218 -232 1653 260 107 22 chr12 84270631 84271388 -60011101 + L1ME3A LINE L1 5302 6122 -31 232 277 121 12 chr12 84271515 84271598 -60010891 + L3b LINE CR1 1489 1580 -3 184 352 32 32 chr12 84271609 84271734 -60010755 - L3 LINE CR1 -433 1144 1020 792 258 38 100 chr12 84273728 84274109 -60008380 + MLT1F1 LTR MaLR 1 365 -202 1387 58 27 5 chr12 84274115 84274303 -60008186 + LTR19A LTR ERV1 1 192 -294 1857 120 18 0 chr12 84274458 84274742 -60007747 + LTR19A LTR ERV1 198 486 0 791 268 36 36 chr12 84274742 84274966 -60007523 + MLT1F1 LTR MaLR 364 587 -6 235 209 90 0 chr12 84275046 84275113 -60007376 + L1MC5 LINE L1 7831 7903 -58 399 319 82 6 chr12 84275554 84275736 -60006753 - MIR SINE MIR -19 243 48 304 298 9 44 chr12 84276062 84276176 -60006313 - MLT1H LTR MaLR -302 247 138 297 320 49 69 chr12 84276458 84276661 -60005828 - L3 LINE CR1 -1369 208 10 180 267 0 89 chr12 84276936 84277026 -60005463 + L2 LINE L2 3170 3251 -62 355 352 146 27 chr12 84277715 84277847 -60004642 - L2 LINE L2 0 3272 3157 2158 120 0 0 chr12 84277847 84278138 -60004351 - AluSx SINE Alu -21 291 1 355 352 146 27 chr12 84278138 84278306 -60004183 - L2 LINE L2 -115 3157 2936 352 263 0 11 chr12 84278566 84278661 -60003828 + LTR67 LTR ERVL 457 550 -7 286 376 53 12 chr12 84278667 84278837 -60003652 - L2 LINE L2 -563 2751 2575 271 312 47 37 chr12 84279567 84279782 -60002707 + L1M4 LINE L1 3349 3565 -2581 1095 183 3 114 chr12 84279813 84280173 -60002316 - L1MA10 LINE L1 -3 6331 6012 7650 22 2 0 chr12 84280529 84281759 -60000730 + L1PA3 LINE L1 4924 6155 0 2234 74 10 3 chr12 84282104 84282400 -60000089 + AluY SINE Alu 1 298 -13 25 31 0 0 chr12 84283477 84283509 -59998980 + AT_rich Low_complexity Low_complexity 1 32 0 2199 70 11 3 chr12 84283764 84284070 -59998419 + AluSp SINE Alu 1 308 0 222 365 0 40 chr12 84284133 84284259 -59998230 - L3 LINE CR1 -2 1575 1455 1635 219 43 18 chr12 84284359 84284752 -59997737 - MER92A LTR ERV1 0 412 10 674 213 0 0 chr12 84285173 84285300 -59997189 + FLAM_C SINE Alu 1 127 -16 330 314 0 17 chr12 84285343 84285461 -59997028 - L1MC4 LINE L1 -1339 6703 6588 646 127 0 14 chr12 84285461 84285603 -59996886 + (TA)n Simple_repeat Simple_repeat 2 141 0 1247 99 77 11 chr12 84285715 84285897 -59996592 - AluSg SINE Alu -114 196 3 1901 97 115 35 chr12 84285897 84286236 -59996253 - MER4E LTR ERV1 -413 366 1 196 286 16 0 chr12 84286486 84286549 -59995940 + L3 LINE CR1 1173 1236 -341 21 36 0 0 chr12 84286777 84286805 -59995684 + AT_rich Low_complexity Low_complexity 1 28 0 1054 277 40 38 chr12 84286902 84287527 -59994962 - L1 LINE L1 -2765 3381 2756 492 253 63 71 chr12 84287863 84288274 -59994215 + L1 LINE L1 2974 3381 -2765 21 36 0 0 chr12 84288371 84288399 -59994090 + AT_rich Low_complexity Low_complexity 1 28 0 196 286 16 0 chr12 84288627 84288690 -59993799 - L3 LINE CR1 -341 1236 1173 1737 100 130 17 chr12 84288940 84289240 -59993249 + MER4E LTR ERV1 1 334 -445 1806 251 76 120 chr12 84339706 84341175 -59941314 + L1M2b LINE L1 608 2012 -5197 22 0 0 0 chr12 84341904 84341926 -59940563 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 84342465 84342487 -59940002 + AT_rich Low_complexity Low_complexity 1 22 0 735 96 0 0 chr12 84343075 84343179 -59939310 - FLAM_C SINE Alu -39 104 1 1287 221 37 14 chr12 84343623 84343917 -59938572 - AluSx SINE Alu 0 302 2 14010 44 9 1 chr12 84343940 84346461 -59936028 + L1PA5 LINE L1 3620 6150 -4 317 256 30 54 chr12 84346850 84347018 -59935471 + MER103 DNA DNA 3 166 0 2040 127 0 40 chr12 84347336 84347658 -59934831 - AluSp SINE Alu -4 309 1 369 287 189 8 chr12 84348219 84348578 -59933911 - L1 LINE L1 -3603 2543 2120 2579 135 111 13 chr12 84349307 84349767 -59932722 + LTR10B LTR ERV1 1 505 0 28521 212 54 48 chr12 84349791 84357137 -59925352 + HERVI LTR ERV1 26 7412 -373 270 180 6 45 chr12 84357174 84357348 -59925141 + A-rich Low_complexity Low_complexity 1 167 0 22 56 0 0 chr12 84358461 84358497 -59923992 + AT_rich Low_complexity Low_complexity 1 36 0 537 235 17 96 chr12 84358902 84359132 -59923357 - L2 LINE L2 0 3313 3102 405 326 59 90 chr12 84359322 84359831 -59922658 - LTR67 LTR ERVL -63 494 2 205 247 91 52 chr12 84363139 84363216 -59919273 + L2 LINE L2 3182 3261 -11 185 323 16 16 chr12 84363779 84363841 -59918648 + L2 LINE L2 2911 2972 -341 248 278 231 46 chr12 84364872 84364967 -59917522 - MIR SINE MIR -6 256 180 183 80 0 0 chr12 84364967 84364992 -59917497 + (TTA)n Simple_repeat Simple_repeat 2 26 0 248 278 231 46 chr12 84364992 84365112 -59917377 - MIR SINE MIR -82 180 1 * 486 324 25 15 chr12 84365112 84365294 -59917195 - MIR SINE MIR -68 194 12 322 267 6 0 chr12 84365617 84365702 -59916787 + MIR SINE MIR 37 123 -85 191 204 91 0 chr12 84366475 84366519 -59915970 - L2 LINE L2 -559 2755 2708 1004 221 34 37 chr12 84366528 84366822 -59915667 + L1MA10 LINE L1 6040 6332 -2 234 0 0 0 chr12 84367260 84367286 -59915203 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1197 204 126 30 chr12 84368026 84368359 -59914130 - MLT1A1 LTR MaLR 0 365 1 198 358 69 82 chr12 84369118 84369509 -59912980 + L2 LINE L2 2866 3251 -21 483 251 10 113 chr12 84370107 84370302 -59912187 - MLT1J1 LTR MaLR -11 435 261 300 275 12 0 chr12 84370303 84370383 -59912106 - MLT1J2 LTR MaLR -332 118 38 237 250 0 0 chr12 84370452 84370512 -59911977 + (TA)n Simple_repeat Simple_repeat 1 60 0 300 281 8 58 chr12 84371014 84371135 -59911354 + L1MC4 LINE L1 6589 6703 -1339 363 200 17 8 chr12 84371142 84371262 -59911227 + (TA)n Simple_repeat Simple_repeat 1 121 0 325 335 136 7 chr12 84372057 84372212 -59910277 - MER5A DNA MER1_type -6 183 9 239 281 62 0 chr12 84372562 84372626 -59909863 + L2 LINE L2 3201 3268 -4 1789 144 38 10 chr12 84373609 84373901 -59908588 + AluSx SINE Alu 4 303 -9 22 0 0 0 chr12 84374271 84374293 -59908196 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 84374646 84374667 -59907822 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 84375206 84375228 -59907261 + AT_rich Low_complexity Low_complexity 1 22 0 201 133 0 0 chr12 84376328 84376358 -59906131 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1568 179 48 3 chr12 84376496 84376786 -59905703 + AluJo SINE Alu 1 303 -9 473 366 53 9 chr12 84376921 84377148 -59905341 - MIR SINE MIR -6 256 20 275 341 0 22 chr12 84378356 84378494 -59903995 - MIR SINE MIR -23 239 105 41995 42 1 2 chr12 84381335 84387493 -59894996 + L1PA3 LINE L1 2 6155 0 24 0 0 0 chr12 84387493 84387517 -59894972 + AT_rich Low_complexity Low_complexity 1 24 0 332 257 59 0 chr12 84387814 84387915 -59894574 + L1ME LINE L1 4998 5104 -1042 978 273 20 4 chr12 84388087 84388336 -59894153 + MIR SINE MIR 5 257 -5 337 299 264 25 chr12 84388337 84388731 -59893758 + L1ME LINE L1 5302 5789 -373 1150 107 0 0 chr12 84388803 84388952 -59893537 + AluSg SINE Alu 30 178 -132 354 274 33 0 chr12 84388961 84389069 -59893420 + MLT1E2 LTR MaLR 336 442 -184 883 119 0 8 chr12 84389069 84389203 -59893286 + AluSg SINE Alu 170 302 -8 6394 71 23 5 chr12 84389430 84390363 -59892126 + L1PA7 LINE L1 5190 6141 -13 1507 216 56 39 chr12 84390507 84390993 -59891496 - MLT1D LTR MaLR 0 505 12 29 47 0 0 chr12 84391063 84391106 -59891383 + AT_rich Low_complexity Low_complexity 1 43 0 844 241 45 31 chr12 84391123 84391414 -59891075 - L1ME2 LINE L1 -91 6073 5779 311 248 113 30 chr12 84391427 84391560 -59890929 + MLT1E1 LTR MaLR 1 144 -510 1896 114 16 46 chr12 84392495 84392801 -59889688 + AluY SINE Alu 1 297 -14 189 107 0 0 chr12 84393179 84393207 -59889282 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 24 53 0 0 chr12 84393502 84393540 -59888949 + AT_rich Low_complexity Low_complexity 1 38 0 375 336 80 18 chr12 84394086 84394360 -59888129 + L2 LINE L2 1917 2207 -1107 1796 159 0 49 chr12 84396510 84396836 -59885653 - AluSx SINE Alu -2 310 1 6157 34 6 1 chr12 84396857 84397644 -59884845 + L1P LINE L1 3620 4410 -1736 8325 243 72 29 chr12 84397752 84400507 -59881982 + HERVI LTR ERV1 4915 7785 0 2766 129 83 17 chr12 84400557 84401028 -59881461 + LTR10B LTR ERV1 4 505 0 2180 133 11 8 chr12 84401255 84401608 -59880881 - THE1A LTR MaLR 0 355 2 11099 105 9 14 chr12 84401609 84403196 -59879293 - THE1A-int LTR MaLR 0 1580 1 1995 119 68 12 chr12 84403196 84403532 -59878957 - THE1A LTR MaLR 0 355 1 329 256 82 123 chr12 84405780 84406049 -59876440 + MIR SINE MIR 2 259 -3 779 200 72 33 chr12 84406148 84406328 -59876161 - AluJo SINE Alu -25 287 101 650 172 0 16 chr12 84407014 84407136 -59875353 + AluSq/x SINE Alu 1 120 -193 31 44 0 0 chr12 84407251 84407296 -59875193 + AT_rich Low_complexity Low_complexity 1 45 0 840 238 48 31 chr12 84407313 84407603 -59874886 - L1ME2 LINE L1 -91 6073 5779 473 226 102 22 chr12 84407616 84407753 -59874736 + MLT1E2 LTR MaLR 1 148 -506 1099 266 70 34 chr12 84407824 84408212 -59874277 + MLT1E2 LTR MaLR 225 626 0 619 266 101 22 chr12 84408214 84408492 -59873997 - L1ME2 LINE L1 -404 5762 5463 2000 201 20 38 chr12 84408544 84409051 -59873438 - MER34 LTR ERV1 -17 525 28 407 212 128 109 chr12 84409087 84409455 -59873034 - L1ME2 LINE L1 -748 5398 5024 313 218 138 53 chr12 84409506 84409694 -59872795 + MLT1E1 LTR MaLR 1 204 -420 26454 126 18 18 chr12 84409731 84416184 -59866305 + L1PA8 LINE L1 5 6479 -8 259 324 12 35 chr12 84416270 84416440 -59866049 + C-rich Low_complexity Low_complexity 1 166 0 * 285 360 0 20 chr12 84416359 84416512 -59865977 + CT-rich Low_complexity Low_complexity 1 150 0 * 331 279 6 43 chr12 84416454 84416615 -59865874 + C-rich Low_complexity Low_complexity 4 158 0 189 107 0 0 chr12 84416635 84416663 -59865826 + (C)n Simple_repeat Simple_repeat 1 28 0 1535 271 69 27 chr12 84416841 84417909 -59864580 - L1M4 LINE L1 -2745 4103 2991 705 323 40 27 chr12 84418008 84418556 -59863933 + L1M1 LINE L1 1897 2451 -5114 3104 245 45 28 chr12 84418563 84419597 -59862892 - L1M4 LINE L1 -4534 2315 1265 315 359 55 27 chr12 84419637 84419893 -59862596 + L1M2 LINE L1 838 1100 -5749 2580 135 111 11 chr12 84420977 84421436 -59861053 + LTR10B LTR ERV1 1 505 0 2029 211 50 32 chr12 84421440 84422107 -59860382 + LTR10B-int LTR ERV1 8 702 -6002 5414 161 17 4 chr12 84422261 84423391 -59859098 - L1PA16 LINE L1 -4 6162 5020 444 37 0 0 chr12 84423627 84423681 -59858808 + (CA)n Simple_repeat Simple_repeat 1 54 0 1924 159 89 3 chr12 84423682 84424054 -59858435 - MLT2C2 LTR ERVL -60 404 1 216 365 96 0 chr12 84424059 84424174 -59858315 - MIR SINE MIR -108 154 29 947 282 179 13 chr12 84424289 84424679 -59857810 - L2 LINE L2 0 3313 2859 323 285 128 52 chr12 84425753 84425925 -59856564 - MIR SINE MIR -59 203 19 21 0 0 0 chr12 84426688 84426709 -59855780 + GC_rich Low_complexity Low_complexity 1 21 0 1434 127 59 0 chr12 84427312 84427565 -59854924 - L1MA4 LINE L1 -3 6297 6030 651 264 50 14 chr12 84427568 84427788 -59854701 + L1M4 LINE L1 3397 3624 -2522 23 0 0 0 chr12 84428514 84428537 -59853952 + AT_rich Low_complexity Low_complexity 1 23 0 741 217 168 30 chr12 84429432 84429813 -59852676 + L1M2b LINE L1 608 1360 -5849 813 222 35 5 chr12 84429980 84430178 -59852311 - MER2 DNA MER2_type -140 205 2 270 343 46 9 chr12 84430494 84430602 -59851887 + MIR SINE MIR 34 145 -117 1403 226 25 29 chr12 84431694 84432380 -59850109 + L1P5 LINE L1 4971 5651 -503 1160 314 51 2 chr12 84432757 84433152 -59849337 - L2 LINE L2 -858 2456 2043 181 284 40 0 chr12 84433405 84433479 -59849010 - MIR SINE MIR -108 154 78 293 304 47 52 chr12 84433583 84433774 -59848715 - L1ME3A LINE L1 -18 6152 5963 234 259 17 0 chr12 84433816 84433874 -59848615 - L1ME3A LINE L1 -201 5969 5911 1171 209 61 45 chr12 84433874 84434233 -59848256 + MLT1A1 LTR MaLR 1 365 0 709 290 50 55 chr12 84434326 84434688 -59847801 + MER110 LTR ERV1 104 463 -28 962 309 50 6 chr12 84435328 84435849 -59846640 - L1ME3A LINE L1 -1128 5018 4475 2120 81 0 39 chr12 84436149 84436459 -59846030 + L1PA5 LINE L1 5854 6151 -3 744 285 87 59 chr12 84436530 84436955 -59845534 + L2 LINE L2 2513 2949 -365 504 288 90 24 chr12 84438342 84438559 -59843930 + MIR SINE MIR 31 262 0 26 0 0 0 chr12 84439033 84439059 -59843430 + AT_rich Low_complexity Low_complexity 1 26 0 390 345 81 27 chr12 84439631 84439854 -59842635 + L3 LINE CR1 1340 1574 -3 2066 206 130 52 chr12 84441327 84441983 -59840506 + MER39 LTR ERV1 1 707 0 360 328 32 89 chr12 84442335 84442582 -59839907 + L2 LINE L2 2872 3104 -168 231 380 53 19 chr12 84443688 84443896 -59838593 - L2 LINE L2 -811 2503 2289 373 323 39 39 chr12 84444114 84444244 -59838245 + L2 LINE L2 3136 3265 -7 662 215 73 17 chr12 84445479 84445656 -59836833 + MLT1A1 LTR MaLR 179 365 0 207 371 10 0 chr12 84445752 84445849 -59836640 - L2 LINE L2 -1362 1952 1855 24 0 0 0 chr12 84449130 84449154 -59833335 + AT_rich Low_complexity Low_complexity 1 24 0 323 293 118 51 chr12 84451068 84451259 -59831230 + MIR SINE MIR 1 203 -59 666 290 65 20 chr12 84451602 84451850 -59830639 + MIR SINE MIR 4 262 0 1022 267 192 13 chr12 84452348 84452734 -59829755 + L2 LINE L2 2859 3313 0 381 276 92 70 chr12 84452852 84452972 -59829517 + MIR SINE MIR 29 145 -117 2102 169 91 9 chr12 84452972 84453345 -59829144 + MLT2C2 LTR ERVL 1 415 -49 444 37 0 0 chr12 84453345 84453399 -59829090 + (TG)n Simple_repeat Simple_repeat 1 54 0 2102 169 91 9 chr12 84453399 84453452 -59829037 + MLT2C2 LTR ERVL 415 462 -2 381 276 92 70 chr12 84453452 84453559 -59828930 + MIR SINE MIR 145 261 -1 186 43 0 0 chr12 84453593 84453616 -59828873 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 27 62 0 0 chr12 84454765 84454813 -59827676 + AT_rich Low_complexity Low_complexity 1 48 0 185 193 24 24 chr12 84455952 84456035 -59826454 + (TA)n Simple_repeat Simple_repeat 2 84 0 2689 189 10 69 chr12 84457125 84457706 -59824783 - MLT2B3 LTR ERVL -7 547 1 23 0 0 0 chr12 84457735 84457758 -59824731 + AT_rich Low_complexity Low_complexity 1 23 0 228 333 0 0 chr12 84457765 84457837 -59824652 - L2 LINE L2 0 3313 3242 463 256 61 61 chr12 84457975 84458167 -59824322 + MIR SINE MIR 35 225 -37 467 261 140 6 chr12 84458217 84458374 -59824115 - L3 LINE CR1 -156 1421 1244 2754 221 54 36 chr12 84458720 84458761 -59823728 - Charlie1 DNA MER1_type 0 2761 2722 3564 134 24 53 chr12 84458761 84459434 -59823055 - MER39B LTR ERV1 0 653 1 2754 221 54 36 chr12 84459434 84459522 -59822967 - Charlie1 DNA MER1_type -39 2722 2637 2064 120 40 3 chr12 84459522 84459822 -59822667 + AluSx SINE Alu 2 312 0 2754 221 54 36 chr12 84459822 84460596 -59821893 - Charlie1 DNA MER1_type -124 2637 1841 341 314 35 0 chr12 84460604 84460690 -59821799 - Charlie1 DNA MER1_type -2672 89 1 349 270 167 0 chr12 84461073 84461199 -59821290 + MIR SINE MIR 57 203 -59 1897 140 52 55 chr12 84461817 84462182 -59820307 - THE1B LTR MaLR 0 364 1 1334 304 185 17 chr12 84462224 84462970 -59819519 + L2 LINE L2 1443 2313 -1001 567 315 137 40 chr12 84462971 84463489 -59819000 + L2 LINE L2 2658 3217 -96 1890 191 45 60 chr12 84463489 84464003 -59818486 + MER67D LTR ERV1 8 513 -1 210 239 22 0 chr12 84464022 84464068 -59818421 + L2 LINE L2 3223 3269 -3 1503 152 93 40 chr12 84464586 84464729 -59817760 - MER44D DNA MER2_type -1882 609 475 4821 105 15 6 chr12 84464729 84465414 -59817075 + LTR8 LTR ERV1 1 691 0 1503 152 93 40 chr12 84465414 84465592 -59816897 - MER44D DNA MER2_type -2016 475 1 231 114 0 0 chr12 84466009 84466044 -59816445 + (TATG)n Simple_repeat Simple_repeat 2 36 0 187 371 82 23 chr12 84467717 84468059 -59814430 + L2 LINE L2 2849 3210 -103 283 183 24 12 chr12 84468242 84468324 -59814165 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 180 0 0 0 chr12 84468326 84468346 -59814143 + (CA)n Simple_repeat Simple_repeat 1 20 0 5025 148 16 40 chr12 84468346 84469585 -59812904 + L1PB4 LINE L1 4958 6155 -1 2006 121 0 23 chr12 84472173 84472480 -59810009 - AluSx SINE Alu -12 300 1 651 264 50 14 chr12 84472936 84473156 -59809333 - L1M4 LINE L1 -2522 4686 4459 1439 126 59 0 chr12 84473159 84473413 -59809076 + L1MA4 LINE L1 6030 6298 -2 2050 261 69 25 chr12 84473559 84474616 -59807873 - L1M4 LINE L1 -2757 4451 3348 1232 297 34 20 chr12 84474711 84475267 -59807222 + L1M1 LINE L1 1897 2460 -5105 * 5239 250 57 92 chr12 84475266 84477411 -59805078 - L1M4 LINE L1 -4535 2674 608 321 277 0 0 chr12 84478411 84478512 -59803977 + (TA)n Simple_repeat Simple_repeat 1 101 0 242 250 22 43 chr12 84478514 84478606 -59803883 + L1MC4 LINE L1 6614 6703 -1339 * 248 206 22 65 chr12 84478524 84478616 -59803873 - L1MC4 LINE L1 -1339 6703 6616 242 182 18 0 chr12 84478636 84478691 -59803798 - L1MCa LINE L1 -4365 2061 2006 279 236 0 0 chr12 84478693 84478765 -59803724 + (TA)n Simple_repeat Simple_repeat 1 72 0 302 301 24 0 chr12 84478769 84478852 -59803637 - L1MC4 LINE L1 -1344 6698 6614 216 246 0 0 chr12 84478857 84478926 -59803563 + (TA)n Simple_repeat Simple_repeat 1 69 0 270 178 44 59 chr12 84479124 84479259 -59803230 + (CATTA)n Simple_repeat Simple_repeat 3 135 0 235 246 0 0 chr12 84479556 84479617 -59802872 + L1ME LINE L1 5764 5824 -297 279 0 0 0 chr12 84479921 84479952 -59802537 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr12 84480312 84480333 -59802156 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr12 84481245 84481277 -59801212 + AT_rich Low_complexity Low_complexity 1 32 0 3362 305 101 7 chr12 84481676 84483164 -59799325 + L2 LINE L2 1661 3313 0 1976 141 11 0 chr12 84484220 84484535 -59797954 - AluSx SINE Alu 0 318 1 397 352 76 8 chr12 84484646 84484882 -59797607 - MIR SINE MIR -1 261 10 23 33 0 0 chr12 84485285 84485315 -59797174 + AT_rich Low_complexity Low_complexity 1 30 0 287 390 50 7 chr12 84486385 84486526 -59795963 - L2 LINE L2 -20 3252 3106 838 184 87 0 chr12 84487105 84487290 -59795199 - MER3 DNA MER1_type -4 205 5 21 0 0 0 chr12 84488952 84488973 -59793516 + AT_rich Low_complexity Low_complexity 1 21 0 189 330 87 29 chr12 84489183 84489286 -59793203 - L2 LINE L2 -26 3287 3179 25 31 0 0 chr12 84489957 84489989 -59792500 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr12 84490192 84490235 -59792254 + AT_rich Low_complexity Low_complexity 1 43 0 338 344 0 32 chr12 84490339 84490493 -59791996 + MIR SINE MIR 59 207 -55 1949 112 0 4 chr12 84492037 84492340 -59790149 + AluY SINE Alu 17 318 0 7658 185 25 7 chr12 84492350 84494953 -59787536 + L1PA16 LINE L1 3512 6162 -4 226 352 29 9 chr12 84495087 84495192 -59787297 - L3 LINE CR1 -162 1415 1309 670 191 98 0 chr12 84496329 84496502 -59785987 - L1M4 LINE L1 -3790 2356 2167 2223 71 19 29 chr12 84496503 84496812 -59785677 - AluY SINE Alu -5 306 1 2425 58 3 0 chr12 84496822 84497116 -59785373 - AluYb8 SINE Alu -23 295 1 22 35 0 0 chr12 84497553 84497582 -59784907 + AT_rich Low_complexity Low_complexity 1 29 0 2292 79 0 13 chr12 84497906 84498211 -59784278 - AluSx SINE Alu -7 305 5 2417 58 0 3 chr12 84498222 84498513 -59783976 - AluSc SINE Alu -19 290 1 976 161 0 31 chr12 84498565 84498727 -59783762 - AluJb SINE Alu -17 295 139 300 27 0 0 chr12 84498730 84498767 -59783722 + (TA)n Simple_repeat Simple_repeat 1 37 0 2201 70 0 0 chr12 84498969 84499272 -59783217 + AluSc SINE Alu 21 323 0 405 0 0 0 chr12 84500587 84500632 -59781857 + (TG)n Simple_repeat Simple_repeat 2 46 0 225 258 48 16 chr12 84500676 84500738 -59781751 + L2 LINE L2 3190 3253 -60 4704 152 10 10 chr12 84500777 84501641 -59780848 + L1MA4 LINE L1 5254 6117 -183 11415 80 1 0 chr12 84501645 84503136 -59779353 + L1P LINE L1 4 1495 -4651 359 44 0 0 chr12 84503133 84503178 -59779311 + L1P LINE L1 3409 3453 -2693 * 1626 52 5 0 chr12 84503169 84503380 -59779109 - L1P LINE L1 -875 5271 5060 2439 31 0 3 chr12 84503380 84503670 -59778819 + L1PA4 LINE L1 5858 6149 -6 515 341 140 21 chr12 84504000 84504607 -59777882 - L2 LINE L2 -465 2849 2171 409 274 122 79 chr12 84504995 84505053 -59777436 - MLT1L LTR MaLR 0 615 561 1938 123 18 0 chr12 84505053 84505360 -59777129 + AluSq SINE Alu 1 312 0 409 274 122 79 chr12 84505360 84505694 -59776795 - MLT1L LTR MaLR -54 561 205 2050 135 3 0 chr12 84506972 84507276 -59775213 - AluSq SINE Alu -8 305 1 313 331 70 17 chr12 84508987 84509159 -59773330 - MIR SINE MIR -61 201 21 308 256 158 24 chr12 84510340 84510504 -59771985 - MLT1J1 LTR MaLR -37 409 224 1703 154 28 7 chr12 84510540 84510899 -59771590 + AluJb SINE Alu 6 370 0 351 96 0 0 chr12 84510910 84510962 -59771527 + (GGGA)n Simple_repeat Simple_repeat 3 54 0 209 108 27 0 chr12 84510961 84510998 -59771491 + A-rich Low_complexity Low_complexity 1 38 0 * 562 241 24 47 chr12 84510999 84511169 -59771320 - MLT1J2 LTR MaLR -238 212 47 316 246 85 23 chr12 84511423 84511553 -59770936 + L1ME4a LINE L1 5720 5857 -264 2889 244 28 21 chr12 84511577 84512226 -59770263 - L1ME1 LINE L1 -5 6161 5503 1801 224 14 6 chr12 84512226 84512588 -59769901 - MLT1A1 LTR MaLR 0 365 1 2889 244 28 21 chr12 84512588 84512782 -59769707 - L1ME1 LINE L1 -663 5503 5312 1495 226 50 3 chr12 84513061 84513398 -59769091 - MLT1-int LTR MaLR -662 709 357 1361 184 20 26 chr12 84513402 84513706 -59768783 - L1MA6 LINE L1 -5 6295 5994 1407 139 4 59 chr12 84513708 84513981 -59768508 + L1MA6 LINE L1 5724 5981 -319 230 210 0 32 chr12 84513984 84514046 -59768443 + L2 LINE L2 1638 1697 -1617 428 51 17 0 chr12 84514057 84514116 -59768373 + (GGGGA)n Simple_repeat Simple_repeat 5 64 0 34 0 0 0 chr12 84514139 84514173 -59768316 + AT_rich Low_complexity Low_complexity 1 34 0 2155 113 7 0 chr12 84514204 84514505 -59767984 - AluSp SINE Alu -10 303 1 230 156 0 0 chr12 84514580 84514625 -59767864 - LTR66 LTR ERVL -172 438 394 * 231 156 0 0 chr12 84514587 84514632 -59767857 + LTR66 LTR ERVL 394 438 -172 470 344 23 23 chr12 84514690 84514908 -59767581 + MIR SINE MIR 45 262 0 30 45 0 0 chr12 84515319 84515363 -59767126 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 84515469 84515492 -59766997 + AT_rich Low_complexity Low_complexity 1 23 0 720 251 56 26 chr12 84516984 84517346 -59765143 - MER66A LTR ERV1 -46 432 27 223 185 0 31 chr12 84518937 84519002 -59763487 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 329 274 10 20 chr12 84519004 84519106 -59763383 + L1MC4 LINE L1 6616 6716 -1326 526 66 109 0 chr12 84519143 84519407 -59763082 + (TA)n Simple_repeat Simple_repeat 1 292 0 399 169 84 0 chr12 84519412 84519483 -59763006 - MLT2C2 LTR ERVL -48 416 340 466 246 145 0 chr12 84519487 84519625 -59762864 - MLT2D LTR ERVL -256 158 1 833 304 116 24 chr12 84519833 84520331 -59762158 - L2 LINE L2 -12 3301 2756 1072 254 0 0 chr12 84521797 84522021 -59760468 - MER58A DNA MER1_type 0 224 1 24 67 0 0 chr12 84523072 84523117 -59759372 + AT_rich Low_complexity Low_complexity 1 45 0 1287 302 82 42 chr12 84523298 84524222 -59758267 + L1MEd LINE L1 81 1041 -5078 933 223 13 31 chr12 84524558 84524787 -59757702 + AluJo SINE Alu 11 235 -77 21 36 0 0 chr12 84525025 84525053 -59757436 + AT_rich Low_complexity Low_complexity 1 28 0 409 314 166 15 chr12 84525290 84525621 -59756868 + L1ME LINE L1 5263 5643 -521 640 174 21 6 chr12 84525702 84525943 -59756546 + AluJ SINE Alu 1 294 -18 195 294 167 39 chr12 84527089 84527191 -59755298 - L2 LINE L2 -280 3033 2919 295 216 69 49 chr12 84527201 84527303 -59755186 - MER103 DNA DNA -52 114 11 316 287 0 20 chr12 84529063 84529164 -59753325 + (CATA)n Simple_repeat Simple_repeat 3 101 0 749 260 16 5 chr12 84529310 84529502 -59752987 + MER58A DNA MER1_type 31 224 0 24 77 0 0 chr12 84530227 84530279 -59752210 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr12 84530948 84530970 -59751519 + AT_rich Low_complexity Low_complexity 1 22 0 240 122 0 0 chr12 84531311 84531352 -59751137 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 276 111 0 0 chr12 84532787 84532832 -59749657 + (CA)n Simple_repeat Simple_repeat 2 46 0 397 267 85 18 chr12 84534432 84534597 -59747892 + MIR SINE MIR 50 225 -37 245 280 68 53 chr12 84534754 84534886 -59747603 + L2 LINE L2 3002 3135 -178 335 142 78 130 chr12 84535373 84535531 -59746958 - MLT1J1 LTR MaLR -298 152 1 24 53 0 0 chr12 84535639 84535677 -59746812 + AT_rich Low_complexity Low_complexity 1 38 0 246 370 52 13 chr12 84535704 84535858 -59746631 + L3 LINE CR1 185 344 -1233 1975 149 7 0 chr12 84536027 84536364 -59746125 + AluSx SINE Alu 1 339 0 190 296 37 0 chr12 84536369 84536423 -59746066 + L3 LINE CR1 900 955 -622 2110 129 0 7 chr12 84536434 84536743 -59745746 + AluSg SINE Alu 1 307 -3 309 390 19 6 chr12 84537061 84537220 -59745269 + L2 LINE L2 2601 2761 -553 315 301 32 97 chr12 84537319 84537535 -59744954 - MER112 DNA MER1_type -32 228 27 476 313 185 0 chr12 84537568 84537779 -59744710 + MIR SINE MIR 9 258 -4 2174 107 65 6 chr12 84537822 84538160 -59744329 + THE1B LTR MaLR 1 358 -6 253 341 32 16 chr12 84538288 84538411 -59744078 - MIR SINE MIR -65 143 19 239 230 30 60 chr12 84538772 84538872 -59743617 - MER103 DNA DNA -11 155 59 258 125 58 49 chr12 84539345 84539416 -59743073 - MLT1J2 LTR MaLR -44 406 291 1896 164 18 42 chr12 84540198 84540582 -59741907 - THE1C LTR MaLR 0 375 1 478 89 13 51 chr12 84540584 84540663 -59741826 - THE1C LTR MaLR -299 76 1 7436 91 5 23 chr12 84541437 84542483 -59740006 + MER11C LTR ERVK 1 1065 -6 270 0 0 0 chr12 84542483 84542513 -59739976 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5729 20 0 0 chr12 84542516 84543171 -59739318 - L1PA2 LINE L1 -13 6142 5488 7436 91 5 23 chr12 84543171 84543197 -59739292 + MER11C LTR ERVK 1032 1057 -14 1420 195 11 0 chr12 84544075 84544186 -59738303 + AluSx SINE Alu 11 119 -193 194 0 39 0 chr12 84544186 84544212 -59738277 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1420 195 11 0 chr12 84544212 84544361 -59738128 + AluSx SINE Alu 119 274 -38 363 23 0 0 chr12 84544362 84544406 -59738083 + (TC)n Simple_repeat Simple_repeat 2 45 0 * 390 91 0 0 chr12 84544405 84544460 -59738029 + (TG)n Simple_repeat Simple_repeat 2 56 0 261 269 124 41 chr12 84544516 84544661 -59737828 - MER67D LTR ERV1 0 514 358 300 262 123 16 chr12 84544752 84544874 -59737615 - L1MC4a LINE L1 -1694 6114 5980 284 76 8 76 chr12 84544887 84545005 -59737484 + (TA)n Simple_repeat Simple_repeat 2 111 0 1590 154 84 45 chr12 84545005 84545363 -59737126 - MER67D LTR ERV1 -129 385 14 503 229 13 51 chr12 84545388 84545545 -59736944 - MER97a DNA MER1_type? -743 151 1 2138 108 3 40 chr12 84545695 84546018 -59736471 + AluSx SINE Alu 1 311 -1 2434 62 0 3 chr12 84546084 84546389 -59736100 + AluY SINE Alu 1 304 -7 3998 125 35 5 chr12 84546471 84547105 -59735384 + MER39B LTR ERV1 1 653 0 357 289 114 44 chr12 84547179 84547452 -59735037 + L1ME3A LINE L1 1243 1534 -4892 29 60 0 0 chr12 84547658 84547708 -59734781 + AT_rich Low_complexity Low_complexity 1 50 0 22 70 0 0 chr12 84547766 84547809 -59734680 + AT_rich Low_complexity Low_complexity 1 43 0 397 266 119 55 chr12 84548104 84548615 -59733874 + L1ME3A LINE L1 4584 5127 -1299 437 299 73 63 chr12 84549163 84549424 -59733065 + L1ME3A LINE L1 5733 6001 -449 1639 186 14 20 chr12 84549424 84549720 -59732769 + AluJb SINE Alu 1 294 -18 437 299 73 63 chr12 84549720 84549899 -59732590 + L1ME3A LINE L1 6001 6177 -273 1301 230 163 7 chr12 84550082 84550256 -59732233 + MLT1C LTR MaLR 1 147 -320 180 77 0 0 chr12 84550256 84550282 -59732207 + (CA)n Simple_repeat Simple_repeat 2 27 0 1301 230 163 7 chr12 84550282 84550511 -59731978 + MLT1C LTR MaLR 147 467 0 23 33 0 0 chr12 84551118 84551148 -59731341 + AT_rich Low_complexity Low_complexity 1 30 0 249 250 0 62 chr12 84551358 84551454 -59731035 - L1MC4 LINE L1 -1339 6703 6614 238 203 0 17 chr12 84551448 84551507 -59730982 + L1MCa LINE L1 2007 2064 -4362 * 263 190 0 100 chr12 84551494 84551594 -59730895 + L1MC4 LINE L1 6614 6703 -1339 322 206 31 0 chr12 84551605 84551702 -59730787 + (TATG)n Simple_repeat Simple_repeat 3 102 0 424 291 162 10 chr12 84551749 84552045 -59730444 + L1ME4a LINE L1 5528 5868 -253 363 310 58 13 chr12 84552459 84552614 -59729875 + L2 LINE L2 2595 2756 -558 379 219 20 113 chr12 84552625 84552776 -59729713 + MER5B DNA MER1_type 1 137 -41 237 277 48 24 chr12 84552962 84553045 -59729444 + L2 LINE L2 2994 3078 -194 340 304 27 20 chr12 84553204 84553352 -59729137 + L2 LINE L2 3161 3309 -4 270 277 226 7 chr12 84553505 84553660 -59728829 + MIR SINE MIR 68 256 -6 226 243 96 96 chr12 84553670 84553806 -59728683 + L2 LINE L2 3156 3291 -22 2222 108 0 3 chr12 84553853 84554159 -59728330 - AluSg SINE Alu -5 305 1 211 335 30 79 chr12 84554290 84554454 -59728035 - L2 LINE L2 -445 2869 2714 180 0 0 0 chr12 84554980 84555000 -59727489 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 213 152 43 0 chr12 84558115 84558161 -59724328 + CT-rich Low_complexity Low_complexity 1 48 0 1330 187 99 0 chr12 84558512 84558785 -59723704 - L1M1 LINE L1 -6384 1181 882 633 190 80 36 chr12 84558768 84559059 -59723430 - L1M1 LINE L1 -6895 670 221 * 5966 162 43 2 chr12 84559059 84560083 -59722406 - Tigger1 DNA MER2_type -1352 1066 1 232 281 139 55 chr12 84560083 84560321 -59722168 - L2 LINE L2 -47 3266 3009 195 377 94 6 chr12 84560698 84560857 -59721632 + L2 LINE L2 2660 2832 -482 497 281 88 0 chr12 84561266 84561426 -59721063 + FAM SINE Alu 1 174 -1 375 277 160 14 chr12 84561628 84561841 -59720648 + L2 LINE L2 3070 3313 0 870 215 0 0 chr12 84561880 84562043 -59720446 - AluJb SINE Alu -14 298 136 275 372 76 22 chr12 84562592 84562869 -59719620 + L2 LINE L2 2325 2616 -698 227 269 0 0 chr12 84563590 84563642 -59718847 + L2 LINE L2 3203 3254 -18 214 339 18 54 chr12 84563678 84563790 -59718699 + MIR SINE MIR 1 108 -154 868 195 48 102 chr12 84563794 84563965 -59718524 - L1MC5 LINE L1 -30 7931 7752 2084 123 0 0 chr12 84563965 84564257 -59718232 - AluSx SINE Alu -20 292 1 868 195 48 102 chr12 84564257 84564563 -59717926 - L1MC5 LINE L1 -209 7752 7480 582 264 157 0 chr12 84564603 84564762 -59717727 - MER5A DNA MER1_type -2 187 4 263 258 0 22 chr12 84564766 84564855 -59717634 - L1MC5 LINE L1 -526 7435 7349 277 278 14 0 chr12 84564871 84564943 -59717546 + MER5B DNA MER1_type 2 74 -104 337 209 33 11 chr12 84564943 84565034 -59717455 - L1MC5 LINE L1 -889 7072 6980 243 103 0 0 chr12 84565202 84565241 -59717248 + (T)n Simple_repeat Simple_repeat 1 39 0 345 270 70 7 chr12 84566405 84566556 -59715933 - MIR SINE MIR -64 144 31 1946 100 0 11 chr12 84566880 84567150 -59715339 + AluSg SINE Alu 44 310 0 206 221 65 0 chr12 84569145 84569222 -59713267 + A-rich Low_complexity Low_complexity 1 82 0 1623 121 0 4 chr12 84570487 84570719 -59711770 + AluSg/x SINE Alu 80 310 0 1846 160 16 0 chr12 84570859 84571171 -59711318 - Tigger1 DNA MER2_type -2101 317 1 508 299 113 47 chr12 84571323 84571794 -59710695 + L1ME4a LINE L1 5616 6117 -4 426 114 0 0 chr12 84572071 84572141 -59710348 + (CAT)n Simple_repeat Simple_repeat 1 70 0 2180 113 0 0 chr12 84572347 84572640 -59709849 + AluSx SINE Alu 1 293 -19 269 316 95 54 chr12 84574415 84574583 -59707906 + MIR3 SINE MIR 20 194 -14 941 344 124 10 chr12 84575254 84575868 -59706621 - L2 LINE L2 -672 2642 1959 307 274 43 0 chr12 84575931 84576048 -59706441 - L1ME4a LINE L1 -45 6076 5955 21 0 0 0 chr12 84576218 84576239 -59706250 + AT_rich Low_complexity Low_complexity 1 21 0 724 299 32 5 chr12 84576301 84576518 -59705971 - MIR SINE MIR -38 224 2 284 333 37 26 chr12 84576586 84576775 -59705714 - L2 LINE L2 -411 2903 2713 299 196 22 145 chr12 84578427 84578565 -59703924 + MIR SINE MIR 47 167 -95 737 188 0 0 chr12 84578588 84578716 -59703773 - AluJo SINE Alu -131 181 54 23 0 0 0 chr12 84578827 84578850 -59703639 + AT_rich Low_complexity Low_complexity 1 23 0 870 198 25 0 chr12 84578931 84579093 -59703396 + FRAM SINE Alu 1 164 -12 1847 166 0 6 chr12 84579190 84579504 -59702985 - AluSx SINE Alu 0 312 1 920 211 115 10 chr12 84579864 84580073 -59702416 - MLT1A1 LTR MaLR 0 365 135 1638 142 163 39 chr12 84580081 84580468 -59702021 + LTR23 LTR ERV1 3 437 0 2104 104 7 7 chr12 84580531 84580829 -59701660 - AluSq SINE Alu -15 298 1 2695 204 27 54 chr12 84581651 84581771 -59700718 + LTR23-int LTR ERV1 278 400 -5931 5165 81 12 0 chr12 84581771 84582454 -59700035 + LTR8 LTR ERV1 1 691 0 2695 204 27 54 chr12 84582454 84582503 -59699986 + LTR23-int LTR ERV1 400 449 -5882 1874 151 0 16 chr12 84582503 84582807 -59699682 - AluSq SINE Alu -14 299 1 2695 204 27 54 chr12 84582807 84583305 -59699184 + LTR23-int LTR ERV1 449 2293 -4038 703 213 0 0 chr12 84583312 84583448 -59699041 + LTR23-int LTR ERV1 854 989 -4134 371 136 17 0 chr12 84583448 84583507 -59698982 + MER34C LTR ERV1 157 216 -369 906 127 0 0 chr12 84583542 84583668 -59698821 - FLAM_C SINE Alu -11 132 7 291 253 36 12 chr12 84583673 84583756 -59698733 + MER34C LTR ERV1 246 330 -255 5104 187 94 72 chr12 84583759 84584365 -59698124 + LTR23-int LTR ERV1 1135 1726 -4467 2372 84 0 13 chr12 84584365 84584674 -59697815 + AluSx SINE Alu 1 305 -7 5104 187 94 72 chr12 84584674 84584802 -59697687 + LTR23-int LTR ERV1 1726 1850 -4343 2060 136 0 7 chr12 84584802 84585103 -59697386 + AluSx SINE Alu 1 299 -13 5104 187 94 72 chr12 84585103 84585609 -59696880 + LTR23-int LTR ERV1 1850 2343 -3850 2039 137 0 10 chr12 84585609 84585922 -59696567 - AluSg SINE Alu 0 310 1 5104 187 94 72 chr12 84585922 84587820 -59694669 + LTR23-int LTR ERV1 2343 5668 -525 586 193 9 0 chr12 84587829 84587938 -59694551 + LTR23-int LTR ERV1 4791 4900 -223 704 217 7 12 chr12 84588040 84588058 -59694431 - MLT1A1 LTR MaLR -227 138 121 2201 151 47 16 chr12 84588058 84588482 -59694007 + LTR23 LTR ERV1 1 437 0 704 217 7 12 chr12 84588482 84588619 -59693870 - MLT1A1 LTR MaLR -244 121 1 431 362 115 36 chr12 84588708 84589429 -59693060 + L2 LINE L2 2005 2782 -532 829 251 0 0 chr12 84590065 84590232 -59692257 + Tigger7 DNA MER2_type 3 169 -2318 991 236 109 10 chr12 84590233 84590526 -59691963 + MER2 DNA MER2_type 23 344 -1 * 1448 144 66 12 chr12 84590526 84590770 -59691719 + Tigger7 DNA MER2_type 2231 2488 -99 1918 148 24 0 chr12 84590782 84591080 -59691409 - AluSx SINE Alu -7 305 1 6873 130 47 9 chr12 84591090 84592267 -59690222 - Tigger3b DNA MER2_type -9 1222 2 587 188 10 0 chr12 84592269 84592370 -59690119 + Tigger7 DNA MER2_type 2389 2490 -1 2569 236 89 31 chr12 84592372 84593806 -59688683 - L1ME2 LINE L1 -28 6136 4621 798 154 12 12 chr12 84593819 84593988 -59688501 + GA-rich Low_complexity Low_complexity 5 173 0 417 219 165 6 chr12 84594020 84594184 -59688305 - L1ME2 LINE L1 -1541 4605 4416 707 175 26 0 chr12 84594201 84594315 -59688174 - FLAM_C SINE Alu -26 117 1 1025 279 43 37 chr12 84594324 84594840 -59687649 - L1ME2 LINE L1 -1745 4401 3883 * 1438 292 23 4 chr12 84594835 84595363 -59687126 - L1ME2 LINE L1 -2579 3567 3030 26 0 0 0 chr12 84595506 84595532 -59686957 + AT_rich Low_complexity Low_complexity 1 26 0 1631 119 79 4 chr12 84595588 84595841 -59686648 + AluSg SINE Alu 6 277 -33 446 45 0 15 chr12 84595841 84595907 -59686582 + (CAAAC)n Simple_repeat Simple_repeat 5 69 0 2143 101 10 0 chr12 84596510 84596816 -59685673 - AluSx SINE Alu -3 309 1 23 0 0 0 chr12 84598169 84598192 -59684297 + AT_rich Low_complexity Low_complexity 1 23 0 655 261 80 28 chr12 84598754 84599003 -59683486 - MIR SINE MIR 0 262 1 1246 261 38 32 chr12 84599224 84599596 -59682893 - MLT1A2 LTR MaLR 0 374 1 1051 280 138 17 chr12 84599596 84600183 -59682306 - L2 LINE L2 -41 3272 2621 1267 219 52 145 chr12 84601543 84602101 -59680388 - MER67C LTR ERV1 -7 507 2 205 416 13 7 chr12 84602752 84602906 -59679583 - L2 LINE L2 -576 2738 2584 23 33 0 0 chr12 84602986 84603016 -59679473 + AT_rich Low_complexity Low_complexity 1 30 0 2559 151 12 21 chr12 84603736 84604168 -59678321 + MSTA LTR MaLR 1 428 0 1072 203 45 18 chr12 84604540 84604878 -59677611 - MLT1B LTR MaLR -14 376 7 1632 218 46 0 chr12 84604890 84605257 -59677232 - MLT1B-int LTR MaLR -11 1724 1341 305 337 0 0 chr12 84605419 84605520 -59676969 - MLT1B-int LTR MaLR -956 779 679 2206 211 24 9 chr12 84605580 84606241 -59676248 - MLT1-int LTR MaLR -487 884 1 1030 214 29 98 chr12 84606241 84606587 -59675902 - MLT2D LTR ERVL 0 414 93 495 238 9 12 chr12 84606609 84606762 -59675727 + L1MA10 LINE L1 6163 6330 0 23 54 0 0 chr12 84608473 84608510 -59673979 + AT_rich Low_complexity Low_complexity 1 37 0 364 232 0 0 chr12 84608620 84608689 -59673800 - LTR40b LTR ERVL 0 462 394 450 245 22 0 chr12 84608697 84608836 -59673653 + L1M4 LINE L1 3599 3740 -2406 473 263 53 0 chr12 84608840 84608954 -59673535 + MER5A DNA MER1_type 1 120 -69 1163 249 47 57 chr12 84608966 84609351 -59673138 - LTR40b LTR ERVL -78 384 4 2601 52 0 0 chr12 84611671 84611981 -59670508 + AluY SINE Alu 1 310 -1 792 133 12 67 chr12 84611997 84612162 -59670327 - L1PB4 LINE L1 -1 6155 6000 201 288 15 15 chr12 84612162 84612183 -59670306 + MIR3 SINE MIR 135 155 -53 510 114 13 0 chr12 84612183 84612262 -59670227 + MADE1 DNA Mariner 1 80 0 201 288 15 15 chr12 84612262 84612306 -59670183 + MIR3 SINE MIR 154 200 -8 275 294 29 29 chr12 84613641 84613687 -59668802 + MIR SINE MIR 161 206 -56 1571 200 75 0 chr12 84613687 84614007 -59668482 - MER2 DNA MER2_type 0 344 1 275 294 29 29 chr12 84614007 84614062 -59668427 + MIR SINE MIR 205 262 0 315 318 131 0 chr12 84614375 84614520 -59667969 - MIR3 SINE MIR -41 167 5 444 314 57 45 chr12 84616163 84616408 -59666081 + MIR SINE MIR 15 262 0 203 329 38 13 chr12 84616854 84616933 -59665556 - MIR SINE MIR -65 143 63 2193 95 0 17 chr12 84617054 84617350 -59665139 - AluSc SINE Alu -13 296 6 2016 133 0 3 chr12 84617831 84618142 -59664347 - AluSx SINE Alu 0 310 1 216 0 0 0 chr12 84618298 84618322 -59664167 + (CTTTG)n Simple_repeat Simple_repeat 2 25 0 450 343 22 0 chr12 84620079 84620216 -59662273 + MIR3 SINE MIR 42 181 -27 928 162 56 20 chr12 84620279 84620477 -59662012 + LTR50 LTR ERVL 15 219 -576 220 330 48 39 chr12 84620676 84620779 -59661710 + L2 LINE L2 3206 3309 -4 * 267 304 32 56 chr12 84620761 84620886 -59661603 + MIR SINE MIR 10 131 -131 986 183 12 0 chr12 84620963 84621132 -59661357 - AluJb SINE Alu -8 304 134 250 349 12 0 chr12 84621137 84621220 -59661269 + L2 LINE L2 3188 3271 -1 23 33 0 0 chr12 84621231 84621261 -59661228 + AT_rich Low_complexity Low_complexity 1 30 0 570 277 117 15 chr12 84621563 84621769 -59660720 + MIR SINE MIR 36 262 0 25 0 0 0 chr12 84621929 84621954 -59660535 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr12 84622047 84622070 -59660419 + AT_rich Low_complexity Low_complexity 1 23 0 2054 130 3 16 chr12 84622801 84623116 -59659373 - AluSq SINE Alu 0 313 3 563 222 56 7 chr12 84623394 84623538 -59658951 + MIR SINE MIR 112 262 0 1717 169 30 14 chr12 84623664 84623960 -59658529 + AluJo SINE Alu 3 303 -9 503 291 8 0 chr12 84624074 84624208 -59658281 + MER69 DNA AcHobo 436 570 -656 * 884 231 72 60 chr12 84624204 84624307 -59658182 + MER69 DNA AcHobo 2011 2111 -415 200 35 35 0 chr12 84624307 84624336 -59658153 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1829 143 4 0 chr12 84624341 84624613 -59657876 - AluSx SINE Alu -37 275 3 884 231 72 60 chr12 84624613 84624949 -59657540 + MER69 DNA AcHobo 2114 2461 -65 281 205 217 0 chr12 84625044 84625127 -59657362 - MIR SINE MIR -105 157 57 21 57 0 0 chr12 84625224 84625259 -59657230 + AT_rich Low_complexity Low_complexity 1 35 0 1796 143 40 43 chr12 84625775 84626147 -59656342 + THE1C LTR MaLR 5 375 0 379 309 35 40 chr12 84626408 84626609 -59655880 - L2 LINE L2 0 3313 3114 372 371 62 25 chr12 84626741 84627016 -59655473 - L2 LINE L2 -636 2678 2394 187 287 35 35 chr12 84627924 84628011 -59654478 - MIR SINE MIR -69 139 53 230 284 186 0 chr12 84628142 84628244 -59654245 - MIR SINE MIR -107 155 35 31 44 0 0 chr12 84628402 84628447 -59654042 + AT_rich Low_complexity Low_complexity 1 45 0 301 281 85 7 chr12 84629050 84629188 -59653301 - MIR SINE MIR -45 217 67 2185 118 3 0 chr12 84630692 84630989 -59651500 - AluSg SINE Alu -11 299 2 2096 121 3 13 chr12 84631308 84631614 -59650875 + AluSx SINE Alu 2 304 -8 23 0 0 0 chr12 84631701 84631724 -59650765 + AT_rich Low_complexity Low_complexity 1 23 0 318 276 148 74 chr12 84631774 84631920 -59650569 + L1M4 LINE L1 3917 4051 -2095 460 234 117 5 chr12 84631920 84632108 -59650381 + MER3 DNA MER1_type 1 209 0 318 276 148 74 chr12 84632108 84632338 -59650151 + L1M4 LINE L1 4051 4321 -1825 205 294 109 36 chr12 84632509 84632673 -59649816 - L2 LINE L2 -8 3305 3149 292 305 67 9 chr12 84632807 84632912 -59649577 + L2 LINE L2 3187 3297 -16 608 145 8 0 chr12 84632919 84633036 -59649453 + GA-rich Low_complexity Low_complexity 2 119 0 21 57 0 0 chr12 84633337 84633372 -59649117 + AT_rich Low_complexity Low_complexity 1 35 0 211 335 214 24 chr12 84633549 84633755 -59648734 + MIR SINE MIR 6 250 -12 402 286 30 91 chr12 84634990 84635189 -59647300 - MER5A DNA MER1_type 0 189 3 23 33 0 0 chr12 84635312 84635342 -59647147 + AT_rich Low_complexity Low_complexity 1 30 0 208 169 51 34 chr12 84635346 84635405 -59647084 + A-rich Low_complexity Low_complexity 5 64 0 23 0 0 0 chr12 84635411 84635434 -59647055 + AT_rich Low_complexity Low_complexity 1 23 0 228 101 38 38 chr12 84635460 84635539 -59646950 + (TA)n Simple_repeat Simple_repeat 1 79 0 1139 269 63 25 chr12 84635718 84636115 -59646374 + L1MCb LINE L1 1 412 -5633 * 2088 243 180 38 chr12 84636097 84636356 -59646133 + L1MCb LINE L1 1310 1531 -5033 3755 174 54 14 chr12 84636356 84637172 -59645317 - L1MA8 LINE L1 -1 6290 5442 2088 243 180 38 chr12 84637172 84638326 -59644163 + L1MCb LINE L1 1531 2922 -3642 2183 105 0 13 chr12 84638365 84638669 -59643820 - AluSc SINE Alu -9 300 1 5872 225 26 49 chr12 84638674 84640682 -59641807 + L1MC3 LINE L1 31 1974 -4672 1347 190 25 3 chr12 84640686 84640970 -59641519 + L1MB7 LINE L1 5694 5983 -201 7030 97 31 5 chr12 84640985 84642157 -59640332 + L1MA3 LINE L1 5104 6305 0 2508 285 131 13 chr12 84642172 84644297 -59638192 + L1MC3 LINE L1 3212 5630 -1014 1001 268 157 25 chr12 84644525 84644966 -59637523 + MLT1D LTR MaLR 7 505 0 707 240 13 2 chr12 84644966 84645171 -59637318 + L1MC3 LINE L1 5678 5882 -780 23 54 0 0 chr12 84645183 84645220 -59637269 + AT_rich Low_complexity Low_complexity 1 37 0 5706 203 26 21 chr12 84645225 84645299 -59637190 + L1MC3 LINE L1 5859 5931 -2352 1864 117 40 0 chr12 84645299 84645619 -59636870 + AluSx SINE Alu 1 331 0 5706 203 26 21 chr12 84645619 84646851 -59635638 + L1MC3 LINE L1 5931 7172 -1111 202 340 134 0 chr12 84647019 84647116 -59635373 - L2 LINE L2 0 3313 3204 22 88 0 0 chr12 84647160 84647217 -59635272 + AT_rich Low_complexity Low_complexity 1 57 0 201 368 59 15 chr12 84647789 84647925 -59634564 - L2 LINE L2 -455 2859 2718 21 57 0 0 chr12 84648561 84648596 -59633893 + AT_rich Low_complexity Low_complexity 1 35 0 3441 65 2 0 chr12 84648862 84649310 -59633179 + L1PA7 LINE L1 5705 6153 -1 210 208 146 0 chr12 84649483 84649531 -59632958 + MER5A DNA MER1_type 132 186 -3 612 251 63 6 chr12 84649744 84649919 -59632570 + MIR SINE MIR 75 259 -3 313 151 19 35 chr12 84650207 84650297 -59632192 - MLT1G LTR MaLR 0 590 457 585 144 30 12 chr12 84650369 84650501 -59631988 + L1PB4 LINE L1 5355 5489 -667 1178 166 3 114 chr12 84650502 84650791 -59631698 + AluJo SINE Alu 39 295 -17 3413 173 7 22 chr12 84650792 84651482 -59631007 + L1PB4 LINE L1 5477 6156 0 1909 194 74 6 chr12 84651490 84651713 -59630776 - L1MC3 LINE L1 -15 7770 7563 555 43 0 0 chr12 84651713 84651783 -59630706 + (CATTA)n Simple_repeat Simple_repeat 5 74 0 1296 253 64 11 chr12 84651784 84652160 -59630329 - MSTD LTR MaLR 0 396 1 1909 194 74 6 chr12 84652160 84652408 -59630081 - L1MC3 LINE L1 -221 7564 7265 1432 226 51 69 chr12 84652412 84652576 -59629913 - MLT1D LTR MaLR 0 505 340 2047 145 69 0 chr12 84652576 84652908 -59629581 - LTR18A LTR ERVL -2 355 1 1432 226 51 69 chr12 84652908 84653253 -59629236 - MLT1D LTR MaLR -165 340 5 4149 218 50 35 chr12 84653258 84654037 -59628452 - L1MC3 LINE L1 -523 7262 6496 1425 171 97 31 chr12 84654037 84654389 -59628100 - THE1C LTR MaLR 0 375 1 4149 218 50 35 chr12 84654389 84654508 -59627981 - L1MC3 LINE L1 -1289 6496 6380 1834 137 74 0 chr12 84654508 84654793 -59627696 - AluSx SINE Alu -6 306 1 4149 218 50 35 chr12 84654793 84655002 -59627487 - L1MC3 LINE L1 -1405 6380 6138 7610 24 15 0 chr12 84655012 84656027 -59626462 - L1PA3 LINE L1 -3 6152 5134 1809 10 0 0 chr12 84656027 84656234 -59626255 + L1PA3 LINE L1 4912 5118 -1028 * 3153 229 24 8 chr12 84656233 84656976 -59625513 - L1MC3 LINE L1 -1638 6147 5393 673 271 37 14 chr12 84657046 84657264 -59625225 - MER58A DNA MER1_type 0 224 2 28 48 0 0 chr12 84657467 84657509 -59624980 + AT_rich Low_complexity Low_complexity 1 42 0 193 357 64 70 chr12 84657583 84657740 -59624749 + L2 LINE L2 3078 3233 -39 23 0 0 0 chr12 84657740 84657763 -59624726 + AT_rich Low_complexity Low_complexity 1 23 0 234 207 0 0 chr12 84657763 84657821 -59624668 + (TA)n Simple_repeat Simple_repeat 2 59 0 358 191 128 0 chr12 84657826 84657920 -59624569 - Tigger5 DNA MER2_type -3 2320 2215 202 244 0 0 chr12 84658035 84658080 -59624409 + (TA)n Simple_repeat Simple_repeat 2 46 0 311 261 9 17 chr12 84658345 84658460 -59624029 - L1ME LINE L1 -298 5823 5710 252 250 0 0 chr12 84658622 84658678 -59623811 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 560 280 64 68 chr12 84659678 84660101 -59622388 - L1ME2 LINE L1 0 6162 5738 1974 120 0 0 chr12 84660109 84660398 -59622091 - AluSx SINE Alu 0 309 21 317 303 8 17 chr12 84660430 84660549 -59621940 - L1ME2 LINE L1 -572 5592 5475 756 241 123 5 chr12 84660553 84660748 -59621741 - L1MB5 LINE L1 -7 6167 5950 361 267 55 14 chr12 84660751 84660897 -59621592 - L1ME2 LINE L1 -671 5491 5340 3112 144 43 6 chr12 84660945 84661453 -59621036 + MER1A DNA MER1_type 1 527 0 551 214 104 16 chr12 84661453 84661645 -59620844 - L1ME2 LINE L1 -902 5244 5036 5092 154 33 26 chr12 84661685 84663417 -59619072 + L1MA8 LINE L1 4543 6279 -12 774 259 86 115 chr12 84663425 84664709 -59617780 - L1MDa LINE L1 -4408 2132 1012 386 362 45 22 chr12 84664937 84665249 -59617240 - L1MDa LINE L1 -5942 779 461 21 0 0 0 chr12 84665828 84665849 -59616640 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr12 84666371 84666395 -59616094 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 318 320 153 32 chr12 84667114 84667557 -59614932 - L1M4 LINE L1 -2261 3885 3389 1560 212 0 13 chr12 84668686 84668992 -59613497 - AluJb SINE Alu -10 302 1 535 252 8 8 chr12 84669014 84669137 -59613352 - L2 LINE L2 0 3313 3191 481 358 176 5 chr12 84669424 84669821 -59612668 - L2 LINE L2 -9 3304 2840 1456 63 15 24 chr12 84670363 84670569 -59611920 + L1PA5 LINE L1 5936 6139 -15 323 172 22 33 chr12 84670569 84670749 -59611740 + (TA)n Simple_repeat Simple_repeat 1 178 0 236 146 0 0 chr12 84670760 84670808 -59611681 + LTR66 LTR ERVL 392 439 -171 234 91 0 0 chr12 84670808 84670841 -59611648 + (TA)n Simple_repeat Simple_repeat 2 34 0 33 25 0 0 chr12 84671428 84671468 -59611021 + AT_rich Low_complexity Low_complexity 1 40 0 331 329 101 13 chr12 84671662 84671811 -59610678 - HAL1b LINE L1 -787 561 400 374 266 33 32 chr12 84672391 84672550 -59609939 - L1MC/D LINE L1 -439 5682 5539 358 258 134 36 chr12 84672558 84672752 -59609737 - L1MC/D LINE L1 -2341 5467 5255 2316 87 3 3 chr12 84672966 84673275 -59609214 - AluSp SINE Alu -4 309 1 180 0 0 0 chr12 84673370 84673390 -59609099 + (TTG)n Simple_repeat Simple_repeat 2 21 0 270 0 0 0 chr12 84673808 84673838 -59608651 + (TG)n Simple_repeat Simple_repeat 1 30 0 506 313 84 7 chr12 84674386 84674661 -59607828 + L1MC4a LINE L1 4031 4326 -1820 367 336 120 38 chr12 84674689 84675371 -59607118 + L1MC4a LINE L1 4370 5107 -1039 208 194 0 0 chr12 84675563 84675599 -59606890 + G-rich Low_complexity Low_complexity 1 36 0 456 247 55 36 chr12 84675616 84675835 -59606654 + L1MC4a LINE L1 5805 6027 -1781 443 338 22 37 chr12 84676895 84677167 -59605322 - L3b LINE CR1 -114 1469 1202 23 20 5 0 chr12 84677583 84677641 -59604848 + AT_rich Low_complexity Low_complexity 1 30 0 237 119 0 0 chr12 84678617 84678659 -59603830 + (TC)n Simple_repeat Simple_repeat 2 43 0 387 41 0 0 chr12 84678659 84678708 -59603781 + (CA)n Simple_repeat Simple_repeat 1 49 0 34 65 0 0 chr12 84678917 84678979 -59603510 + AT_rich Low_complexity Low_complexity 1 62 0 465 279 19 39 chr12 84679919 84680073 -59602416 - L2 LINE L2 0 3313 3163 283 258 40 8 chr12 84680866 84680990 -59601499 + L1MCc LINE L1 1366 1493 -4930 486 286 29 7 chr12 84681537 84681677 -59600812 + MLT1I LTR MaLR 267 409 0 851 314 41 16 chr12 84681703 84682066 -59600423 + L2 LINE L2 2848 3219 -94 5238 193 38 20 chr12 84682067 84683455 -59599034 - L1MC1 LINE L1 0 6333 4915 305 295 32 0 chr12 84683455 84683550 -59598939 + L2 LINE L2 3170 3267 -5 182 37 37 0 chr12 84683783 84683810 -59598679 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 24 67 0 0 chr12 84685830 84685875 -59596614 + AT_rich Low_complexity Low_complexity 1 45 0 312 300 117 8 chr12 84686950 84687061 -59595428 - MIR SINE MIR -110 152 29 381 288 176 7 chr12 84687061 84687214 -59595275 - MER5A DNA MER1_type -1 188 10 10259 141 51 61 chr12 84687729 84688012 -59594477 + Tigger1 DNA MER2_type 370 654 -1764 2543 61 0 3 chr12 84688012 84688324 -59594165 + AluY SINE Alu 1 311 0 10259 141 51 61 chr12 84688324 84688367 -59594122 + Tigger1 DNA MER2_type 654 696 -1722 333 0 0 0 chr12 84688367 84688404 -59594085 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 10259 141 51 61 chr12 84688404 84689575 -59592914 + Tigger1 DNA MER2_type 696 1845 -573 2113 134 0 10 chr12 84689575 84689888 -59592601 + AluSx SINE Alu 1 310 -2 10259 141 51 61 chr12 84689888 84690457 -59592032 + Tigger1 DNA MER2_type 1845 2418 0 500 192 0 29 chr12 84691388 84691492 -59590997 - MARNA DNA Mariner -338 248 148 3849 24 4 2 chr12 84691515 84691972 -59590517 - L1PA4 LINE L1 0 6155 5698 255 290 169 0 chr12 84691972 84692096 -59590393 + MARNA DNA Mariner 431 575 -11 376 346 40 26 chr12 84694588 84694816 -59587673 + MIR SINE MIR 1 231 -31 23 0 0 0 chr12 84698658 84698681 -59583808 + AT_rich Low_complexity Low_complexity 1 23 0 237 33 0 0 chr12 84698763 84698793 -59583696 + (A)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr12 84699016 84699044 -59583445 + AT_rich Low_complexity Low_complexity 1 28 0 513 238 92 66 chr12 84699591 84699894 -59582595 + L1ME4a LINE L1 5802 6112 -9 22 56 0 0 chr12 84699915 84699951 -59582538 + AT_rich Low_complexity Low_complexity 1 36 0 221 0 0 33 chr12 84700285 84700315 -59582174 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr12 84702473 84702493 -59579996 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1859 130 3 7 chr12 84702585 84702892 -59579597 - AluSx SINE Alu 0 306 1 1602 70 9 0 chr12 84703502 84703716 -59578773 + AluY SINE Alu 92 307 -4 1546 88 36 28 chr12 84704110 84704361 -59578128 + L1PA10 LINE L1 5913 6165 -3 460 295 142 56 chr12 84704479 84705237 -59577252 + L1MC5 LINE L1 6716 7495 -547 200 180 20 20 chr12 84705574 84705624 -59576865 + A-rich Low_complexity Low_complexity 6 55 0 27 0 0 0 chr12 84705747 84705774 -59576715 + AT_rich Low_complexity Low_complexity 1 27 0 320 279 86 70 chr12 84706008 84706309 -59576180 + L1ME1 LINE L1 2269 2574 -3572 279 244 44 0 chr12 84706398 84706488 -59576001 - L1MC4 LINE L1 -1335 6707 6614 435 308 55 61 chr12 84706494 84706806 -59575683 + L1ME1 LINE L1 2676 2985 -3161 229 185 46 31 chr12 84706816 84706881 -59575608 - MER3 DNA MER1_type 0 209 144 2255 263 105 18 chr12 84706901 84707787 -59574702 + L1ME1 LINE L1 5195 6158 -8 257 242 31 46 chr12 84707809 84707956 -59574533 + L1M4 LINE L1 2932 3078 -3068 * 6678 201 8 57 chr12 84707952 84708639 -59573850 + L1P LINE L1 2585 3304 -2842 1723 104 0 20 chr12 84708639 84708888 -59573601 + AluSg SINE Alu 59 302 -8 6678 201 8 57 chr12 84708888 84709479 -59573010 + L1P LINE L1 3304 3761 -2385 2112 103 3 10 chr12 84709479 84709781 -59572708 + AluSq SINE Alu 2 301 -12 6678 201 8 57 chr12 84709781 84710219 -59572270 + L1P LINE L1 3761 4219 -1927 2443 149 32 25 chr12 84710248 84710845 -59571644 - L1MA4 LINE L1 -13 6287 5535 416 302 63 52 chr12 84711215 84711507 -59570982 - MLT1J1 LTR MaLR -139 311 6 196 280 0 0 chr12 84711718 84711768 -59570721 + MIR3 SINE MIR 153 202 -6 26 50 0 0 chr12 84711956 84711996 -59570493 + AT_rich Low_complexity Low_complexity 1 40 0 215 227 0 0 chr12 84712020 84712064 -59570425 + L2 LINE L2 3268 3311 -2 366 324 10 0 chr12 84712749 84712851 -59569638 - L2 LINE L2 -1 3271 3169 334 338 56 5 chr12 84713735 84713948 -59568541 - L2 LINE L2 -701 2613 2390 279 286 10 61 chr12 84713924 84714022 -59568467 + MIR SINE MIR 8 100 -162 * 219 281 31 0 chr12 84714528 84714592 -59567897 - MIR SINE MIR -10 252 187 266 308 154 0 chr12 84714605 84714709 -59567780 + MLT1I LTR MaLR 6 125 -284 350 341 22 50 chr12 84714716 84714898 -59567591 + MLT1I LTR MaLR 233 409 0 614 217 0 148 chr12 84714898 84715101 -59567388 - MIR SINE MIR -89 173 1 23 0 0 0 chr12 84715444 84715467 -59567022 + AT_rich Low_complexity Low_complexity 1 23 0 204 125 0 0 chr12 84717660 84717692 -59564797 + (T)n Simple_repeat Simple_repeat 1 32 0 312 316 46 3 chr12 84718742 84718918 -59563571 + MIR SINE MIR 17 248 -14 29 47 0 0 chr12 84719006 84719049 -59563440 + AT_rich Low_complexity Low_complexity 1 43 0 9535 194 14 2 chr12 84719104 84721816 -59560673 - L1PA14 LINE L1 -2 6159 3421 408 348 50 20 chr12 84721830 84722031 -59560458 - L1ME4a LINE L1 -200 5921 5715 480 336 40 24 chr12 84722073 84722323 -59560166 - L2 LINE L2 -54 3259 3006 219 36 0 0 chr12 84723403 84723431 -59559058 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1808 177 7 7 chr12 84723612 84723917 -59558572 + AluSx SINE Alu 2 306 -6 222 261 11 43 chr12 84723944 84724036 -59558453 + GA-rich Low_complexity Low_complexity 3 91 0 714 70 17 9 chr12 84724165 84724280 -59558209 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 180 0 0 0 chr12 84725592 84725612 -59556877 + (A)n Simple_repeat Simple_repeat 1 20 0 2110 119 20 0 chr12 84725983 84726286 -59556203 - AluSx SINE Alu -3 309 1 22 56 0 0 chr12 84726487 84726523 -59555966 + AT_rich Low_complexity Low_complexity 1 36 0 406 291 153 20 chr12 84726674 84726877 -59555612 + MIR SINE MIR 6 235 -27 226 209 29 48 chr12 84726879 84726984 -59555505 + (TTATA)n Simple_repeat Simple_repeat 3 105 0 244 320 0 16 chr12 84726984 84727112 -59555377 - L1ME LINE L1 -312 5809 5684 3613 100 53 34 chr12 84727992 84728574 -59553915 + L1PA11 LINE L1 5582 6174 0 311 317 50 6 chr12 84729061 84729222 -59553267 + LTR33A LTR ERVL 346 513 -10 634 296 86 30 chr12 84729427 84729968 -59552521 + L1ME3A LINE L1 5299 5876 -294 1100 47 20 13 chr12 84732610 84732759 -59549730 - AluY SINE Alu -1 310 161 1235 225 6 35 chr12 84732967 84733310 -59549179 - L1MB5 LINE L1 -16 6168 5844 2954 69 0 21 chr12 84733328 84733747 -59548742 - LTR7 LTR ERV1 -40 410 1 2465 77 48 13 chr12 84733747 84734126 -59548363 - HERVH LTR ERV1 0 7713 7322 1383 130 19 0 chr12 84734124 84734340 -59548149 - HERVH LTR ERV1 -1894 5819 5600 * 498 240 0 0 chr12 84734341 84734445 -59548044 - HERVH LTR ERV1 -2564 5149 5046 2222 220 30 16 chr12 84734457 84735025 -59547464 - L1MB5 LINE L1 -333 5841 5266 13730 154 30 18 chr12 84735025 84735288 -59547201 + Tigger1 DNA MER2_type 2 260 -2158 1935 123 0 17 chr12 84735288 84735588 -59546901 - AluSg SINE Alu -15 295 1 13730 154 30 18 chr12 84735588 84737713 -59544776 + Tigger1 DNA MER2_type 260 2418 0 5568 238 38 35 chr12 84737713 84739479 -59543010 - L1MB5 LINE L1 -878 5268 3498 484 258 77 0 chr12 84739478 84739660 -59542829 - L1MC/D LINE L1 -2543 5452 5257 * 288 224 72 40 chr12 84739663 84739788 -59542701 - L1MC/D LINE L1 -935 5211 5083 * 1256 308 122 13 chr12 84739776 84740769 -59541720 - L1M4 LINE L1 -863 5283 4183 505 343 61 48 chr12 84740804 84741116 -59541373 + MLT2E LTR ERVL 19 334 -294 29 28 0 0 chr12 84741397 84741433 -59541056 + AT_rich Low_complexity Low_complexity 1 36 0 1512 99 5 0 chr12 84741866 84742068 -59540421 + AluSp SINE Alu 111 313 0 218 227 0 0 chr12 84743071 84743115 -59539374 + (TA)n Simple_repeat Simple_repeat 1 44 0 22 35 0 0 chr12 84743145 84743174 -59539315 + AT_rich Low_complexity Low_complexity 1 29 0 829 253 0 0 chr12 84743711 84743881 -59538608 - MER58B DNA MER1_type -4 337 168 185 304 0 0 chr12 84744135 84744181 -59538308 - L2 LINE L2 0 3313 3268 24 32 0 0 chr12 84744285 84744316 -59538173 + AT_rich Low_complexity Low_complexity 1 31 0 196 335 98 23 chr12 84744361 84744534 -59537955 + L2 LINE L2 2185 2370 -944 2153 110 10 0 chr12 84745028 84745320 -59537169 + AluSg SINE Alu 1 295 -15 1205 291 104 42 chr12 84745322 84747088 -59535401 + L1ME LINE L1 9 1653 -4743 877 299 50 27 chr12 84747187 84747712 -59534777 + L1M4 LINE L1 4614 5150 -996 600 289 138 49 chr12 84747729 84747954 -59534535 + L1ME LINE L1 3694 3898 -2335 1716 189 3 0 chr12 84747954 84748250 -59534239 + AluJo SINE Alu 6 302 -10 600 289 138 49 chr12 84748250 84749724 -59532765 + L1ME LINE L1 3898 5545 -688 295 254 123 0 chr12 84749729 84749851 -59532638 + MER69 DNA AcHobo 2383 2519 -7 1927 122 21 0 chr12 84749991 84750279 -59532210 + AluSc SINE Alu 1 294 -15 2288 82 0 0 chr12 84750298 84750579 -59531910 + AluSx SINE Alu 17 297 -15 241 121 35 69 chr12 84750651 84750709 -59531780 + L1ME3A LINE L1 5900 5955 -215 229 263 88 0 chr12 84751219 84751276 -59531213 + MIR SINE MIR 81 142 -120 180 355 55 9 chr12 84751887 84751997 -59530492 + MIR3 SINE MIR 43 157 -51 216 0 0 0 chr12 84752692 84752716 -59529773 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1310 191 35 62 chr12 84752922 84753210 -59529279 + AluJo SINE Alu 3 282 -30 592 320 45 5 chr12 84753400 84753622 -59528867 - MIR SINE MIR 0 262 32 21 57 0 0 chr12 84753718 84753753 -59528736 + AT_rich Low_complexity Low_complexity 1 35 0 2327 56 10 3 chr12 84753889 84754191 -59528298 - AluY SINE Alu -7 304 1 321 241 8 0 chr12 84755440 84755575 -59526914 + CT-rich Low_complexity Low_complexity 1 136 0 200 108 0 27 chr12 84757488 84757525 -59524964 + (CAG)n Simple_repeat Simple_repeat 3 38 0 252 351 0 18 chr12 84758030 84758144 -59524345 + CT-rich Low_complexity Low_complexity 1 112 0 22 35 0 0 chr12 84761046 84761075 -59521414 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr12 84761089 84761131 -59521358 + AT_rich Low_complexity Low_complexity 1 42 0 192 217 0 0 chr12 84761261 84761307 -59521182 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 24 32 0 0 chr12 84764767 84764798 -59517691 + AT_rich Low_complexity Low_complexity 1 31 0 313 239 9 35 chr12 84765234 84765347 -59517142 + T-rich Low_complexity Low_complexity 4 113 0 493 335 48 14 chr12 84766761 84766970 -59515519 - MIR SINE MIR -25 237 22 395 244 25 25 chr12 84767327 84767446 -59515043 - MLT1K LTR MaLR -38 550 432 459 272 50 33 chr12 84767943 84768123 -59514366 - L2 LINE L2 -31 3282 3100 210 388 31 0 chr12 84768160 84768258 -59514231 - L2 LINE L2 -308 3005 2905 23 0 0 0 chr12 84768296 84768319 -59514170 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 84769159 84769179 -59513310 + (T)n Simple_repeat Simple_repeat 1 20 0 228 300 0 0 chr12 84769247 84769327 -59513162 - L1MC4 LINE L1 -1344 6698 6619 * 252 306 47 0 chr12 84769308 84769393 -59513096 + L1MC4 LINE L1 6614 6702 -1340 530 52 111 7 chr12 84769394 84769701 -59512788 + (TA)n Simple_repeat Simple_repeat 1 339 0 2604 106 0 8 chr12 84769848 84770215 -59512274 - THE1B LTR MaLR 0 364 1 306 248 166 45 chr12 84770271 84770428 -59512061 + MER112 DNA MER1_type 64 239 -21 1301 191 156 0 chr12 84770428 84770685 -59511804 - AluJo SINE Alu -5 297 1 192 314 0 0 chr12 84771112 84771163 -59511326 + MIR3 SINE MIR 140 190 -18 304 253 49 29 chr12 84771745 84771868 -59510621 - MLT1J2 LTR MaLR -250 161 41 593 380 24 12 chr12 84772143 84772472 -59510017 + L2 LINE L2 2260 2592 -722 538 393 38 10 chr12 84772494 84772798 -59509691 + L2 LINE L2 2782 3093 -179 649 285 121 36 chr12 84772987 84773352 -59509137 + L2 LINE L2 2918 3313 0 25 0 0 0 chr12 84773594 84773619 -59508870 + AT_rich Low_complexity Low_complexity 1 25 0 258 403 56 35 chr12 84774055 84774286 -59508203 + L2 LINE L2 3032 3267 -5 229 222 0 25 chr12 84774471 84774552 -59507937 + GA-rich Low_complexity Low_complexity 4 82 0 506 298 100 55 chr12 84774625 84774934 -59507555 + L2 LINE L2 2988 3310 -3 28 0 0 0 chr12 84775219 84775247 -59507242 + AT_rich Low_complexity Low_complexity 1 28 0 280 239 26 80 chr12 84775976 84776089 -59506400 + L2 LINE L2 3199 3305 -8 39 74 0 0 chr12 84776724 84776805 -59505684 + AT_rich Low_complexity Low_complexity 1 81 0 21 57 0 0 chr12 84777029 84777064 -59505425 + AT_rich Low_complexity Low_complexity 1 35 0 36 0 0 0 chr12 84777412 84777448 -59505041 + AT_rich Low_complexity Low_complexity 1 36 0 485 325 53 29 chr12 84777635 84777844 -59504645 - MIR SINE MIR 0 262 49 875 135 6 17 chr12 84777976 84778154 -59504335 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 596 273 69 36 chr12 84778364 84778639 -59503850 - L2 LINE L2 -394 2920 2637 3104 169 19 4 chr12 84779790 84780304 -59502185 + Tigger7 DNA MER2_type 1 522 -1965 369 283 0 0 chr12 84780303 84780395 -59502094 + Tigger7 DNA MER2_type 2496 2587 0 * 29 28 0 0 chr12 84781106 84781142 -59501347 + AT_rich Low_complexity Low_complexity 1 36 0 181 296 23 0 chr12 84781293 84781337 -59501152 + L2 LINE L2 3254 3298 -15 1377 67 0 0 chr12 84783110 84783318 -59499171 + L1PA5 LINE L1 5957 6164 0 186 43 0 0 chr12 84783850 84783873 -59498616 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 372 341 45 11 chr12 84783989 84784168 -59498321 - MIR SINE MIR -44 218 34 28 0 0 0 chr12 84786595 84786623 -59495866 + AT_rich Low_complexity Low_complexity 1 28 0 368 248 83 38 chr12 84786643 84786800 -59495689 + MER69 DNA AcHobo 27 190 -1036 306 0 0 0 chr12 84787087 84787121 -59495368 + (T)n Simple_repeat Simple_repeat 1 34 0 883 202 17 0 chr12 84787415 84787588 -59494901 + L1MA7 LINE L1 5883 6058 -233 21 0 0 0 chr12 84788000 84788021 -59494468 + GC_rich Low_complexity Low_complexity 1 21 0 188 45 0 0 chr12 84788222 84788244 -59494245 + (T)n Simple_repeat Simple_repeat 1 22 0 291 294 36 103 chr12 84788279 84788473 -59494016 + MIR SINE MIR 33 213 -49 2455 122 25 0 chr12 84788536 84788930 -59493559 + L1MA8 LINE L1 5883 6286 -5 234 0 0 0 chr12 84791276 84791302 -59491187 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 680 260 17 17 chr12 84791978 84792159 -59490330 + MIR SINE MIR 48 228 -34 22 0 0 0 chr12 84792683 84792705 -59489784 + AT_rich Low_complexity Low_complexity 1 22 0 221 196 0 71 chr12 84792857 84792913 -59489576 - L2 LINE L2 0 3313 3262 28 0 0 0 chr12 84793309 84793337 -59489152 + AT_rich Low_complexity Low_complexity 1 28 0 584 306 124 34 chr12 84794096 84794586 -59487903 - L2 LINE L2 0 3313 2780 2204 81 0 3 chr12 84795776 84796071 -59486418 + L1PA7 LINE L1 5854 6147 -7 21 89 0 0 chr12 84796543 84796599 -59485890 + AT_rich Low_complexity Low_complexity 1 56 0 214 132 38 0 chr12 84797124 84797177 -59485312 + (TA)n Simple_repeat Simple_repeat 2 56 0 2053 109 0 3 chr12 84797177 84797461 -59485028 - AluSg SINE Alu -25 285 3 227 379 48 0 chr12 84798927 84799030 -59483459 - L3 LINE CR1 -99 1478 1371 22 0 0 0 chr12 84799649 84799671 -59482818 + AT_rich Low_complexity Low_complexity 1 22 0 433 296 45 35 chr12 84800210 84800409 -59482080 - L2 LINE L2 -1 3312 3112 207 279 192 10 chr12 84800482 84800586 -59481903 - L2 LINE L2 -3139 175 53 195 343 29 14 chr12 84800723 84800793 -59481696 - L2 LINE L2 -15 3257 3187 270 306 144 22 chr12 84800941 84801121 -59481368 - MIR SINE MIR -10 252 51 21 36 0 0 chr12 84801313 84801341 -59481148 + AT_rich Low_complexity Low_complexity 1 28 0 225 254 0 0 chr12 84802042 84802101 -59480388 + MIR SINE MIR 74 132 -130 401 292 50 0 chr12 84804023 84804143 -59478346 + L2 LINE L2 3188 3313 0 207 235 0 39 chr12 84804483 84804534 -59477955 - L2 LINE L2 -74 3239 3191 519 314 78 0 chr12 84804832 84805036 -59477453 - L2 LINE L2 -465 2849 2630 626 314 189 29 chr12 84805040 84805594 -59476895 - L2 LINE L2 -846 2468 1826 22 80 0 0 chr12 84807056 84807106 -59475383 + AT_rich Low_complexity Low_complexity 1 50 0 391 288 8 8 chr12 84807833 84807951 -59474538 + MIR SINE MIR 89 206 -56 374 101 22 22 chr12 84808384 84808473 -59474016 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 210 390 0 10 chr12 84808811 84808911 -59473578 - L2 LINE L2 -181 3091 2993 339 322 98 23 chr12 84809092 84809266 -59473223 - MER5B DNA MER1_type 0 189 3 557 121 30 10 chr12 84810648 84810747 -59471742 - L1MC1 LINE L1 0 6333 6233 695 211 42 0 chr12 84810848 84810990 -59471499 - AluJb SINE Alu -49 263 116 624 273 240 4 chr12 84811002 84811277 -59471212 - L3 LINE CR1 -193 1384 1045 1693 52 0 0 chr12 84811283 84811496 -59470993 + L1PA5 LINE L1 5936 6148 -6 281 299 60 27 chr12 84812576 84812760 -59469729 + L1ME LINE L1 5679 5868 -253 23 0 0 0 chr12 84813059 84813082 -59469407 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 84813975 84813997 -59468492 + AT_rich Low_complexity Low_complexity 1 22 0 214 406 14 36 chr12 84814710 84814848 -59467641 - MIR SINE MIR -122 140 6 197 214 179 0 chr12 84815241 84815297 -59467192 + MIR SINE MIR 197 262 0 245 359 17 17 chr12 84816057 84816174 -59466315 + L2 LINE L2 3149 3265 -7 207 330 21 43 chr12 84816185 84816279 -59466210 + MIR3 SINE MIR 15 106 -102 43 71 0 0 chr12 84816295 84816380 -59466109 + AT_rich Low_complexity Low_complexity 1 85 0 232 259 37 0 chr12 84816483 84816537 -59465952 - L3 LINE CR1 -1 1576 1521 611 257 102 5 chr12 84816677 84816864 -59465625 - MIR SINE MIR -46 216 12 728 207 57 36 chr12 84816998 84817191 -59465298 + MER3 DNA MER1_type 13 209 0 4238 200 72 113 chr12 84817442 84817588 -59464901 - L1MC4 LINE L1 -2 8040 7890 183 80 0 0 chr12 84817588 84817613 -59464876 + (TG)n Simple_repeat Simple_repeat 2 26 0 4238 200 72 113 chr12 84817613 84819515 -59462974 - L1MC4 LINE L1 -152 7890 6078 215 219 85 49 chr12 84819515 84819597 -59462892 + MIR SINE MIR 165 249 -13 3515 184 42 11 chr12 84822064 84822775 -59459714 - MER44D DNA MER2_type 0 605 1 229 211 0 0 chr12 84822843 84822881 -59459608 - MER8 DNA MER2_type -11 228 191 1949 156 0 25 chr12 84822999 84823319 -59459170 + AluSx SINE Alu 1 312 0 272 253 71 30 chr12 84823552 84823651 -59458838 + MIR SINE MIR 77 179 -83 227 191 0 0 chr12 84823831 84823878 -59458611 - L1MA7 LINE L1 -332 5959 5913 1392 161 35 3 chr12 84823906 84824191 -59458298 + L1MA7 LINE L1 5997 6290 -1 424 323 0 0 chr12 84824683 84824813 -59457676 + MIR SINE MIR 79 208 -54 999 165 0 0 chr12 84824895 84825071 -59457418 + AluSq SINE Alu 136 311 -2 872 120 0 7 chr12 84825071 84825213 -59457276 + (GGAA)n Simple_repeat Simple_repeat 2 142 0 794 152 17 17 chr12 84825355 84825533 -59456956 + GA-rich Low_complexity Low_complexity 1 178 0 247 202 67 118 chr12 84826366 84826485 -59456004 + MIR SINE MIR 103 215 -47 559 147 42 0 chr12 84828056 84828151 -59454338 - Tigger7 DNA MER2_type -9 2578 2480 28 0 0 0 chr12 84828902 84828930 -59453559 + AT_rich Low_complexity Low_complexity 1 28 0 368 248 83 38 chr12 84828950 84829107 -59453382 + MER69 DNA AcHobo 27 190 -1036 306 0 0 0 chr12 84829395 84829429 -59453060 + (T)n Simple_repeat Simple_repeat 1 34 0 447 169 146 0 chr12 84829761 84829850 -59452639 + THE1C LTR MaLR 1 102 -273 1362 174 0 61 chr12 84829852 84830116 -59452373 + AluJb SINE Alu 54 301 -11 311 264 0 0 chr12 84830878 84830950 -59451539 - L2 LINE L2 -2 3270 3199 212 0 36 0 chr12 84831182 84831210 -59451279 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 25 31 0 0 chr12 84831623 84831655 -59450834 + AT_rich Low_complexity Low_complexity 1 32 0 267 260 26 13 chr12 84831821 84831898 -59450591 + MIR3 SINE MIR 124 201 -7 1573 180 57 45 chr12 84832243 84832759 -59449730 - MER67C LTR ERV1 -30 484 1 22 0 0 0 chr12 84834689 84834711 -59447778 + AT_rich Low_complexity Low_complexity 1 22 0 1579 153 25 15 chr12 84835969 84836243 -59446246 - AluJo SINE Alu -30 282 6 2339 70 3 25 chr12 84836578 84836932 -59445557 - AluY SINE Alu 0 347 1 369 0 0 0 chr12 84836955 84836996 -59445493 + (CA)n Simple_repeat Simple_repeat 2 42 0 1145 53 27 0 chr12 84838319 84838469 -59444020 + HERV9 LTR ERV1 259 412 -7987 2536 157 12 9 chr12 84838767 84839194 -59443295 - MSTA LTR MaLR 0 428 1 23 68 0 0 chr12 84839622 84839666 -59442823 + AT_rich Low_complexity Low_complexity 1 44 0 23 86 0 0 chr12 84840754 84840812 -59441677 + AT_rich Low_complexity Low_complexity 1 58 0 308 179 49 8 chr12 84840931 84841054 -59441435 + (TA)n Simple_repeat Simple_repeat 2 129 0 321 345 34 0 chr12 84841784 84841903 -59440586 - L2 LINE L2 -1 3312 3190 1720 120 6 123 chr12 84841933 84842282 -59440207 + AluSg1 SINE Alu 1 308 -1 28 29 0 0 chr12 84843454 84843489 -59439000 + AT_rich Low_complexity Low_complexity 1 35 0 438 20 0 0 chr12 84844514 84844565 -59437924 + (TTATA)n Simple_repeat Simple_repeat 2 52 0 192 380 50 0 chr12 84845935 84846035 -59436454 + L2 LINE L2 3208 3312 -1 27 0 0 0 chr12 84846723 84846750 -59435739 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr12 84847317 84847344 -59435145 + AT_rich Low_complexity Low_complexity 1 27 0 251 229 21 62 chr12 84847666 84847762 -59434727 + GA-rich Low_complexity Low_complexity 3 94 0 346 240 80 48 chr12 84849973 84850098 -59432391 + MER5B DNA MER1_type 50 178 0 27 29 0 0 chr12 84850280 84850314 -59432175 + AT_rich Low_complexity Low_complexity 1 34 0 2125 114 7 0 chr12 84851708 84852006 -59430483 - AluSp SINE Alu -3 310 11 217 200 18 36 chr12 84852324 84852379 -59430110 - L2 LINE L2 -1 3312 3259 297 173 0 80 chr12 84853536 84853611 -59428878 - L2 LINE L2 -91 3222 3154 278 104 0 0 chr12 84855088 84855145 -59427344 + L1 LINE L1 5244 5300 -846 29 28 0 0 chr12 84857094 84857130 -59425359 + AT_rich Low_complexity Low_complexity 1 36 0 251 215 108 0 chr12 84857666 84857731 -59424758 + MARNA DNA Mariner 132 203 -383 201 303 92 0 chr12 84858114 84858190 -59424299 + L2 LINE L2 2752 2834 -480 1079 212 4 4 chr12 84858303 84858529 -59423960 + L1M4 LINE L1 3520 3745 -2401 588 247 0 59 chr12 84858702 84858872 -59423617 - L2 LINE L2 0 3313 3154 1383 329 116 24 chr12 84859001 84859872 -59422617 - L2 LINE L2 -131 3182 2232 22 35 0 0 chr12 84859920 84859949 -59422540 + AT_rich Low_complexity Low_complexity 1 29 0 278 246 39 129 chr12 84860055 84860311 -59422178 - MLT1L LTR MaLR -210 405 173 564 269 75 25 chr12 84863006 84863207 -59419282 - MER112 DNA MER1_type -43 217 7 377 178 27 14 chr12 84864267 84864340 -59418149 + MER116 DNA Mariner 7 80 0 203 239 91 57 chr12 84864449 84864537 -59417952 - L2 LINE L2 -2 3270 3180 267 173 0 0 chr12 84865044 84865096 -59417393 + T-rich Low_complexity Low_complexity 1 52 0 2228 93 3 3 chr12 84865125 84865425 -59417064 - AluSg SINE Alu -10 300 1 680 240 17 6 chr12 84865604 84865779 -59416710 - MER5B DNA MER1_type 0 178 2 290 275 42 50 chr12 84868838 84868958 -59413531 + L2 LINE L2 3150 3268 -4 587 352 34 0 chr12 84869029 84869262 -59413227 + MIR SINE MIR 12 252 -10 2028 137 3 19 chr12 84870694 84871007 -59411482 - AluSq SINE Alu -5 308 1 24 32 0 0 chr12 84874642 84874673 -59407816 + AT_rich Low_complexity Low_complexity 1 31 0 462 267 152 0 chr12 84875090 84875255 -59407234 - MIR SINE MIR -7 255 66 23 0 0 0 chr12 84875707 84875730 -59406759 + AT_rich Low_complexity Low_complexity 1 23 0 542 319 27 43 chr12 84875744 84876001 -59406488 + MIR SINE MIR 10 262 0 1034 317 91 18 chr12 84878295 84879113 -59403376 - L2 LINE L2 -1 3312 2435 500 294 46 12 chr12 84879905 84880113 -59402376 - MIR SINE MIR -16 246 31 206 321 0 0 chr12 84881369 84881425 -59401064 - L2 LINE L2 -720 2594 2539 205 320 144 32 chr12 84881622 84881747 -59400742 - L2 LINE L2 0 3313 3175 316 343 10 0 chr12 84882081 84882180 -59400309 + MER5B DNA MER1_type 50 149 -29 2141 123 0 0 chr12 84882258 84882558 -59399931 + AluSx SINE Alu 1 300 -12 410 321 89 82 chr12 84883302 84883716 -59398773 + L2 LINE L2 2856 3272 0 2257 95 10 0 chr12 84884254 84884560 -59397929 + AluSc SINE Alu 1 309 0 6977 17 2 0 chr12 84884826 84885630 -59396859 + L1PA3 LINE L1 5347 6152 -3 345 299 19 19 chr12 84886249 84886356 -59396133 - MIR SINE MIR -98 164 58 273 441 68 12 chr12 84887648 84887809 -59394680 - L2 LINE L2 -3 3269 3100 3760 20 5 0 chr12 84888467 84888913 -59393576 + L1PA4 LINE L1 5707 6154 -1 424 342 51 15 chr12 84889219 84889415 -59393074 + MIR SINE MIR 57 259 -3 180 0 0 0 chr12 84890098 84890118 -59392371 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr12 84892275 84892299 -59390190 + AT_rich Low_complexity Low_complexity 1 24 0 259 361 17 17 chr12 84892612 84892731 -59389758 - MIR SINE MIR -112 150 32 1309 218 128 15 chr12 84892753 84893220 -59389269 + Charlie1b DNA MER1_type 1 520 -3 27 29 0 0 chr12 84894007 84894041 -59388448 + AT_rich Low_complexity Low_complexity 1 34 0 990 224 17 35 chr12 84894085 84894188 -59388301 - L1MC4 LINE L1 -16 8026 7923 231 36 0 0 chr12 84894188 84894216 -59388273 + (TC)n Simple_repeat Simple_repeat 1 28 0 990 224 17 35 chr12 84894216 84894402 -59388087 - L1MC4 LINE L1 -119 7923 7742 303 303 33 25 chr12 84894970 84895092 -59387397 - L2 LINE L2 0 3313 3191 246 176 54 14 chr12 84895999 84896073 -59386416 - L1MC4 LINE L1 -1353 6689 6613 22 35 0 0 chr12 84896492 84896521 -59385968 + AT_rich Low_complexity Low_complexity 1 29 0 300 130 43 0 chr12 84897031 84897100 -59385389 + (TA)n Simple_repeat Simple_repeat 1 72 0 891 142 14 0 chr12 84897100 84897248 -59385241 - L1M2 LINE L1 -519 5793 5644 * 1200 153 14 14 chr12 84897246 84897468 -59385021 + L1M2 LINE L1 5425 5646 -666 413 319 37 67 chr12 84897486 84897756 -59384733 + L2 LINE L2 2882 3143 -170 215 209 55 11 chr12 84897870 84897961 -59384528 + (TA)n Simple_repeat Simple_repeat 1 95 0 218 308 131 9 chr12 84898894 84899001 -59383488 + L2 LINE L2 3193 3312 -1 24 53 0 0 chr12 84902331 84902369 -59380120 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 84902913 84902934 -59379555 + AT_rich Low_complexity Low_complexity 1 21 0 182 402 26 8 chr12 84903535 84903652 -59378837 - MIR SINE MIR -122 140 22 249 308 45 53 chr12 84904269 84904402 -59378087 - L2 LINE L2 0 3313 3182 245 253 203 0 chr12 84906032 84906111 -59376378 + L2 LINE L2 3199 3293 -20 21 57 0 0 chr12 84907385 84907420 -59375069 + AT_rich Low_complexity Low_complexity 1 35 0 201 74 0 0 chr12 84907516 84907543 -59374946 + (GA)n Simple_repeat Simple_repeat 2 28 0 1250 201 108 0 chr12 84908373 84908642 -59373847 - MLT1A1 LTR MaLR -4 361 64 345 47 0 0 chr12 84908788 84908831 -59373658 + (TG)n Simple_repeat Simple_repeat 2 44 0 661 286 15 31 chr12 84909256 84909452 -59373037 + MIR SINE MIR 6 198 -64 600 142 224 0 chr12 84909684 84909818 -59372671 - HSMAR2 DNA Mariner -2 1300 1137 623 174 9 0 chr12 84910176 84910291 -59372198 + FLAM_C SINE Alu 3 118 -15 413 307 91 6 chr12 84910420 84910596 -59371893 - MIR SINE MIR -21 241 51 180 152 0 0 chr12 84910675 84910708 -59371781 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1978 147 0 0 chr12 84911399 84911699 -59370790 + AluSq SINE Alu 1 300 -13 22 0 0 0 chr12 84913023 84913045 -59369444 + AT_rich Low_complexity Low_complexity 1 22 0 207 69 0 0 chr12 84913446 84913475 -59369014 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1399 183 19 42 chr12 84914083 84914394 -59368095 - AluJo SINE Alu -7 305 2 218 122 0 20 chr12 84915035 84915084 -59367405 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 335 299 0 34 chr12 84915192 84915309 -59367180 + MIR SINE MIR 134 246 -16 192 77 0 0 chr12 84915312 84915338 -59367151 + (T)n Simple_repeat Simple_repeat 1 26 0 226 363 0 57 chr12 84915736 84915860 -59366629 + L2 LINE L2 2648 2764 -550 1550 168 19 16 chr12 84915888 84916198 -59366291 - L1MB1 LINE L1 -103 6065 5755 2489 192 22 25 chr12 84916217 84916970 -59365519 + L1M3 LINE L1 5049 5807 -361 30 69 0 0 chr12 84917921 84917979 -59364510 + AT_rich Low_complexity Low_complexity 1 58 0 201 324 19 48 chr12 84918399 84918504 -59363985 + L2 LINE L2 2286 2387 -927 320 333 70 0 chr12 84918593 84918722 -59363767 - MIR SINE MIR -122 140 3 2243 111 0 0 chr12 84918783 84919081 -59363408 + AluSg SINE Alu 1 298 -12 293 86 14 57 chr12 84919209 84919279 -59363210 + (TTTA)n Simple_repeat Simple_repeat 3 69 0 211 294 147 0 chr12 84919301 84919403 -59363086 - MIR SINE MIR -60 202 86 239 404 87 25 chr12 84920104 84920265 -59362224 - L2 LINE L2 -8 3264 3094 251 353 112 40 chr12 84920322 84920821 -59361668 - L2 LINE L2 -631 2683 2149 912 276 171 14 chr12 84921792 84921985 -59360504 - L2 LINE L2 0 3313 3152 1601 164 98 16 chr12 84921985 84922303 -59360186 - MER2 DNA MER2_type 0 344 1 912 276 171 14 chr12 84922303 84922529 -59359960 - L2 LINE L2 -161 3152 2828 208 315 123 27 chr12 84922653 84922799 -59359690 - L2 LINE L2 -455 2859 2700 319 313 35 17 chr12 84923522 84923637 -59358852 + MIR SINE MIR 15 131 -131 1518 120 0 62 chr12 84923907 84924148 -59358341 + AluSx SINE Alu 55 280 -32 28 29 0 0 chr12 84924269 84924304 -59358185 + AT_rich Low_complexity Low_complexity 1 35 0 310 292 42 10 chr12 84924775 84924871 -59357618 + MIR SINE MIR 31 129 -79 29 0 0 0 chr12 84925516 84925545 -59356944 + AT_rich Low_complexity Low_complexity 1 29 0 1387 154 50 22 chr12 84926108 84926426 -59356063 - L1MA8 LINE L1 0 6291 5965 968 180 1 2 chr12 84926426 84926611 -59355878 + L1M2 LINE L1 5581 5763 -398 393 289 5 78 chr12 84926749 84926925 -59355564 - L2 LINE L2 -1 3312 3125 450 0 0 0 chr12 84926925 84926975 -59355514 + (TA)n Simple_repeat Simple_repeat 2 51 0 1776 165 64 3 chr12 84926976 84927303 -59355186 - MER7A DNA MER2_type 0 346 2 393 289 5 78 chr12 84927303 84927342 -59355147 - L2 LINE L2 -187 3126 3111 23 0 0 0 chr12 84927394 84927417 -59355072 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr12 84927417 84927440 -59355049 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2210 68 0 0 chr12 84927443 84927722 -59354767 - AluY SINE Alu -32 279 1 189 0 0 0 chr12 84928086 84928107 -59354382 + (A)n Simple_repeat Simple_repeat 1 21 0 2110 119 20 0 chr12 84928477 84928780 -59353709 - AluSx SINE Alu -3 309 1 22 56 0 0 chr12 84928981 84929017 -59353472 + AT_rich Low_complexity Low_complexity 1 36 0 406 291 153 20 chr12 84929168 84929371 -59353118 + MIR SINE MIR 6 235 -27 226 209 29 48 chr12 84929373 84929478 -59353011 + (TTATA)n Simple_repeat Simple_repeat 3 105 0 244 320 0 16 chr12 84929478 84929606 -59352883 - L1ME LINE L1 -312 5809 5684 3453 96 57 37 chr12 84930480 84931043 -59351446 + L1PA11 LINE L1 5582 6155 -19 23 33 0 0 chr12 84931043 84931073 -59351416 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr12 84931525 84931581 -59350908 + AT_rich Low_complexity Low_complexity 1 56 0 181 151 38 0 chr12 84932107 84932160 -59350329 + (TA)n Simple_repeat Simple_repeat 2 56 0 2007 112 0 7 chr12 84932160 84932445 -59350044 - AluSg SINE Alu -25 285 3 211 294 147 0 chr12 84932824 84932926 -59349563 + MIR SINE MIR 86 202 -60 293 86 14 57 chr12 84932948 84933018 -59349471 + (TAAA)n Simple_repeat Simple_repeat 3 69 0 2223 92 3 0 chr12 84933146 84933429 -59349060 - AluSx SINE Alu -12 300 17 1927 122 21 0 chr12 84933448 84933736 -59348753 - AluSc SINE Alu -15 294 1 295 254 123 0 chr12 84933876 84933998 -59348491 - MER69 DNA AcHobo -7 2519 2383 350 282 57 35 chr12 84934003 84934353 -59348136 - L1ME LINE L1 -686 5476 5122 453 300 75 17 chr12 84934412 84934882 -59347607 - L1ME LINE L1 -1159 4987 4489 338 347 46 12 chr12 84935541 84935714 -59346775 - MIR SINE MIR -50 212 34 21 0 0 0 chr12 84936591 84936612 -59345877 + AT_rich Low_complexity Low_complexity 1 21 0 213 200 18 36 chr12 84937437 84937492 -59344997 - L2 LINE L2 -1 3312 3259 225 218 0 26 chr12 84938821 84938899 -59343590 + (GGGTG)n Simple_repeat Simple_repeat 3 78 0 261 250 34 11 chr12 84939009 84939097 -59343392 + (CCCCG)n Simple_repeat Simple_repeat 4 93 0 240 278 15 45 chr12 84939041 84939174 -59343315 + C-rich Low_complexity Low_complexity 1 129 0 * 695 23 23 0 chr12 84939307 84939395 -59343094 + (TTTC)n Simple_repeat Simple_repeat 1 90 0 942 137 0 7 chr12 84939396 84939542 -59342947 - AluSq SINE Alu -33 280 136 420 323 0 0 chr12 84939624 84939754 -59342735 - MIR SINE MIR -54 208 79 195 343 19 48 chr12 84943959 84944064 -59338425 + L2 LINE L2 2286 2387 -927 328 318 70 0 chr12 84944153 84944282 -59338207 - MIR SINE MIR -122 140 3 22 0 0 0 chr12 84944478 84944500 -59337989 + GC_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr12 84946272 84946314 -59336175 + AT_rich Low_complexity Low_complexity 1 42 0 345 322 98 23 chr12 84946703 84946877 -59335612 - MER5B DNA MER1_type 0 189 3 377 288 8 8 chr12 84948459 84948577 -59333912 + MIR SINE MIR 89 206 -56 537 393 38 10 chr12 84949179 84949483 -59333006 - L2 LINE L2 -179 3093 2782 558 371 20 32 chr12 84949505 84949847 -59332642 - L2 LINE L2 -722 2592 2255 557 121 30 10 chr12 84950137 84950236 -59332253 + L1MC1 LINE L1 6233 6333 0 26 0 0 0 chr12 84951836 84951862 -59330627 + AT_rich Low_complexity Low_complexity 1 26 0 236 196 54 0 chr12 84952313 84952369 -59330120 + CT-rich Low_complexity Low_complexity 1 59 0 185 189 0 56 chr12 84952437 84952527 -59329962 + T-rich Low_complexity Low_complexity 5 89 0 220 261 0 0 chr12 84953314 84953360 -59329129 - MIR SINE MIR -136 126 81 250 200 0 67 chr12 84953785 84953845 -59328644 - L2 LINE L2 -12 3301 3246 312 284 49 10 chr12 84955888 84955990 -59326499 - MIR SINE MIR -92 170 65 22 0 0 0 chr12 84957525 84957547 -59324942 + GC_rich Low_complexity Low_complexity 1 22 0 236 302 31 44 chr12 84957576 84957735 -59324754 + C-rich Low_complexity Low_complexity 1 157 0 470 285 7 29 chr12 84958180 84958317 -59324172 - MIR3 SINE MIR -21 187 54 203 222 0 22 chr12 84958352 84958397 -59324092 - MIR SINE MIR -13 249 206 278 237 30 92 chr12 84959344 84959475 -59323014 - L1MC4 LINE L1 -13 8029 7907 302 227 30 11 chr12 84959478 84959565 -59322924 - L1MC4 LINE L1 -1341 6981 1990 493 206 28 78 chr12 84959599 84959740 -59322749 - L1MC4 LINE L1 -278 7764 7631 36 0 0 0 chr12 84960899 84960935 -59321554 + AT_rich Low_complexity Low_complexity 1 36 0 42827 34 21 0 chr12 84960935 84966959 -59315530 - L1PA2 LINE L1 0 6155 3 318 273 0 0 chr12 84967976 84968064 -59314425 + (TA)n Simple_repeat Simple_repeat 2 89 0 27 73 0 0 chr12 84968492 84968547 -59313942 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr12 84969757 84969778 -59312711 + AT_rich Low_complexity Low_complexity 1 21 0 2211 139 20 42 chr12 84971305 84971707 -59310782 - Tigger2a DNA MER2_type -40 394 2 222 321 0 0 chr12 84972187 84972240 -59310249 - MIR3 SINE MIR -23 185 133 182 328 78 0 chr12 84972272 84972336 -59310153 - MIR SINE MIR -88 120 52 198 205 0 26 chr12 84972586 84972703 -59309786 + (TA)n Simple_repeat Simple_repeat 1 114 0 22 35 0 0 chr12 84973035 84973064 -59309425 + AT_rich Low_complexity Low_complexity 1 29 0 3959 34 0 0 chr12 84973064 84973537 -59308952 - L1PA4 LINE L1 -1250 4896 4424 7393 38 5 0 chr12 84973537 84974793 -59307696 + L1PA4 LINE L1 4893 6152 -3 82 72 0 0 chr12 84974793 84974959 -59307530 + AT_rich Low_complexity Low_complexity 1 166 0 278 295 155 26 chr12 84975268 84975461 -59307028 - MIR SINE MIR -10 252 35 261 336 100 0 chr12 84975895 84976005 -59306484 - L2 LINE L2 0 3313 3193 315 333 123 0 chr12 84976283 84976397 -59306092 + MIR SINE MIR 5 132 -130 292 328 111 6 chr12 84976855 84977026 -59305463 + MIR SINE MIR 48 236 -26 24 0 0 0 chr12 84977102 84977126 -59305363 + AT_rich Low_complexity Low_complexity 1 24 0 1812 179 52 0 chr12 84977150 84977480 -59305009 + MER7A DNA MER2_type 2 346 0 23 0 0 0 chr12 84977992 84978015 -59304474 + AT_rich Low_complexity Low_complexity 1 23 0 1470 80 0 20 chr12 84978981 84979180 -59303309 + MER107 DNA MER1_type 1 195 -2 2774 88 6 0 chr12 84980223 84980585 -59301904 - THE1B LTR MaLR 0 364 1 327 355 54 6 chr12 84981114 84981280 -59301209 - MIR SINE MIR -88 174 1 2436 143 31 0 chr12 84981573 84981993 -59300496 - L1MB3 LINE L1 0 6183 5751 449 257 111 7 chr12 84982618 84982792 -59299697 - MIR SINE MIR -58 204 8 537 250 88 6 chr12 84984082 84984242 -59298247 - MIR SINE MIR 0 262 90 213 239 18 9 chr12 84985443 84985556 -59296933 + GA-rich Low_complexity Low_complexity 4 117 0 236 30 30 0 chr12 84986073 84986106 -59296383 + (CA)n Simple_repeat Simple_repeat 2 35 0 672 13 0 0 chr12 84986197 84986274 -59296215 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 1541 151 3 64 chr12 84986371 84986669 -59295820 + AluJb SINE Alu 7 286 -26 204 97 0 0 chr12 84986669 84986700 -59295789 + (GGGGA)n Simple_repeat Simple_repeat 4 34 0 198 256 0 0 chr12 84987301 84987379 -59295110 + (CA)n Simple_repeat Simple_repeat 1 78 0 23 0 0 0 chr12 84987753 84987776 -59294713 + AT_rich Low_complexity Low_complexity 1 23 0 201 327 99 0 chr12 84987908 84988009 -59294480 + MIR SINE MIR 138 248 -14 684 174 0 0 chr12 84990007 84990116 -59292373 + FLAM_C SINE Alu 2 110 -33 37 39 0 0 chr12 84990812 84990863 -59291626 + AT_rich Low_complexity Low_complexity 1 51 0 1194 199 9 0 chr12 84991942 84992168 -59290321 + L1PA16 LINE L1 5939 6166 0 26 0 0 0 chr12 84992512 84992538 -59289951 + AT_rich Low_complexity Low_complexity 1 26 0 268 308 75 47 chr12 84992552 84992659 -59289830 - L2 LINE L2 -20 3252 3143 1499 237 81 14 chr12 84992800 84993222 -59289267 - MLT1C LTR MaLR -17 450 1 471 224 0 109 chr12 84994044 84994191 -59288298 - L2 LINE L2 0 3313 3183 347 141 0 0 chr12 84994215 84994279 -59288210 - MER53 DNA DNA -37 152 89 906 163 6 31 chr12 84994379 84994539 -59287950 - FRAM SINE Alu -19 157 2 454 163 12 0 chr12 84994540 84994620 -59287869 - MER53 DNA DNA -94 95 15 515 287 89 43 chr12 84994639 84994963 -59287526 - L2 LINE L2 -124 3189 2851 200 140 0 80 chr12 84995059 84995109 -59287380 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 325 321 131 0 chr12 84996836 84996973 -59285516 + MIR3 SINE MIR 54 208 0 894 231 94 86 chr12 84997185 84997671 -59284818 - MER39 LTR ERV1 0 707 5 1161 96 0 138 chr12 84997933 84998151 -59284338 + AluSc SINE Alu 1 188 -121 22 56 0 0 chr12 84999166 84999202 -59283287 + AT_rich Low_complexity Low_complexity 1 36 0 364 299 56 56 chr12 84999474 84999708 -59282781 + MIR SINE MIR 15 248 -14 1394 96 32 5 chr12 84999805 85000024 -59282465 - L1PA11 LINE L1 -2 6172 5948 21 0 0 0 chr12 85000973 85000994 -59281495 + AT_rich Low_complexity Low_complexity 1 21 0 1801 146 17 7 chr12 85002658 85002953 -59279536 - AluSx SINE Alu -14 298 1 22 70 0 0 chr12 85003222 85003265 -59279224 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr12 85003476 85003506 -59278983 + AT_rich Low_complexity Low_complexity 1 30 0 407 270 48 85 chr12 85003660 85003908 -59278581 - L2 LINE L2 0 3313 3075 21 57 0 0 chr12 85004200 85004235 -59278254 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 85004343 85004372 -59278117 + AT_rich Low_complexity Low_complexity 1 29 0 340 395 29 11 chr12 85004516 85004797 -59277692 + L1ME LINE L1 5488 5773 -389 191 343 148 47 chr12 85005367 85005536 -59276953 + MIR SINE MIR 70 255 -7 192 316 35 0 chr12 85005717 85005774 -59276715 - MIR SINE MIR -58 150 92 2778 116 7 5 chr12 85006127 85006551 -59275938 - Tigger4(Zombi) DNA MER2_type 0 2731 2307 640 156 9 0 chr12 85006546 85006655 -59275834 - Tigger4(Zombi) DNA MER2_type -2620 111 2 * 336 291 20 73 chr12 85006855 85007006 -59275483 + MIR3 SINE MIR 17 159 -49 436 272 179 17 chr12 85007253 85007426 -59275063 + MIR SINE MIR 48 248 -14 195 42 0 0 chr12 85007446 85007470 -59275019 + (CAT)n Simple_repeat Simple_repeat 1 24 0 493 299 91 77 chr12 85008742 85009016 -59273473 - L2 LINE L2 0 3272 2995 189 77 0 0 chr12 85009273 85009299 -59273190 - L2 LINE L2 -11 3302 3277 372 318 33 7 chr12 85009300 85009451 -59273038 + MIR SINE MIR 108 262 0 336 165 29 117 chr12 85009553 85009656 -59272833 - LTR48B LTR ERV1 -2 642 549 825 261 198 48 chr12 85009753 85010013 -59272476 - L2 LINE L2 -430 2884 2664 501 17 0 0 chr12 85010013 85010071 -59272418 + (TG)n Simple_repeat Simple_repeat 1 58 0 825 261 198 48 chr12 85010071 85010286 -59272203 - L2 LINE L2 -650 2664 2338 299 313 176 8 chr12 85010635 85010766 -59271723 + L2 LINE L2 3111 3263 -9 228 67 0 0 chr12 85010774 85010804 -59271685 + (A)n Simple_repeat Simple_repeat 1 30 0 1023 211 100 103 chr12 85011844 85012435 -59270054 - LTR49 LTR ERV1 -2 593 5 8232 193 83 66 chr12 85012577 85015499 -59266990 - LTR49-int LTR ERV1 -214 6117 1552 841 241 75 26 chr12 85015543 85015864 -59266625 - LTR49-int LTR ERV1 -3565 1371 968 461 277 75 93 chr12 85016393 85016769 -59265720 - LTR49-int LTR ERV1 -4954 1377 1009 450 214 39 102 chr12 85016838 85017044 -59265445 - LTR49-int LTR ERV1 -6125 206 14 1155 216 78 126 chr12 85017060 85017685 -59264804 - LTR49 LTR ERV1 0 595 1 296 353 83 25 chr12 85017777 85017981 -59264508 - L2 LINE L2 -185 3087 2872 24 0 0 0 chr12 85018652 85018676 -59263813 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 85020701 85020724 -59261765 + AT_rich Low_complexity Low_complexity 1 23 0 198 304 163 0 chr12 85021138 85021230 -59261259 + MER5A DNA MER1_type 81 187 -2 619 237 84 32 chr12 85021387 85021636 -59260853 - MIR SINE MIR 0 262 1 187 149 21 21 chr12 85021734 85021781 -59260708 + GA-rich Low_complexity Low_complexity 3 49 0 337 182 162 91 chr12 85021829 85021983 -59260506 + L1ME4a LINE L1 5956 6120 -1 22 99 0 0 chr12 85022286 85022357 -59260132 + AT_rich Low_complexity Low_complexity 1 71 0 2198 161 46 38 chr12 85022415 85022912 -59259577 + L1MB3 LINE L1 5675 6175 -8 1323 226 56 0 chr12 85022917 85023187 -59259302 + AluJb SINE Alu 1 285 -27 38 51 0 0 chr12 85023187 85023246 -59259243 + AT_rich Low_complexity Low_complexity 1 59 0 529 297 131 62 chr12 85023511 85023962 -59258527 + L2 LINE L2 2816 3297 -16 564 306 111 0 chr12 85024199 85024398 -59258091 - MIR SINE MIR -31 231 11 21 57 0 0 chr12 85024903 85024938 -59257551 + AT_rich Low_complexity Low_complexity 1 35 0 202 301 176 66 chr12 85025854 85026309 -59256180 - L2 LINE L2 -1 3312 2808 453 360 16 33 chr12 85026378 85026620 -59255869 + MIR SINE MIR 5 242 -20 2537 50 0 0 chr12 85026877 85027180 -59255309 + AluY SINE Alu 1 303 -8 295 342 118 43 chr12 85027307 85027681 -59254808 - L2 LINE L2 -902 2412 2011 21 0 0 0 chr12 85028517 85028538 -59253951 + AT_rich Low_complexity Low_complexity 1 21 0 311 319 62 0 chr12 85028577 85028690 -59253799 + L1 LINE L1 3349 3468 -2678 550 275 113 47 chr12 85029099 85029550 -59252939 + L1 LINE L1 4187 4667 -1479 21 71 0 0 chr12 85029852 85029894 -59252595 + AT_rich Low_complexity Low_complexity 1 42 0 1704 138 87 6 chr12 85030427 85030738 -59251751 - MER61A LTR ERV1 -1 342 7 537 311 48 0 chr12 85030739 85030906 -59251583 - MIR SINE MIR 0 262 88 252 291 76 63 chr12 85030940 85031098 -59251391 + MIR SINE MIR 60 219 -43 386 290 164 39 chr12 85032277 85032508 -59249981 - MIR SINE MIR 0 262 3 25 0 0 0 chr12 85032970 85032995 -59249494 + AT_rich Low_complexity Low_complexity 1 25 0 206 310 0 0 chr12 85033014 85033072 -59249417 + L2 LINE L2 3256 3313 0 372 340 96 21 chr12 85033093 85033281 -59249208 - MIR SINE MIR -41 221 20 201 328 35 17 chr12 85033448 85033506 -59248983 - L2 LINE L2 -72 3200 3142 302 328 70 12 chr12 85033905 85034076 -59248413 - L2 LINE L2 -507 2807 2627 560 242 43 12 chr12 85034966 85035127 -59247362 - MER103 DNA DNA 0 166 1 26 50 0 0 chr12 85037180 85037220 -59245269 + AT_rich Low_complexity Low_complexity 1 40 0 496 322 44 0 chr12 85037483 85037663 -59244826 + MIR SINE MIR 21 208 -54 184 275 88 25 chr12 85038242 85038322 -59244167 + L2 LINE L2 3137 3221 -51 441 0 0 0 chr12 85039149 85039198 -59243291 + (TA)n Simple_repeat Simple_repeat 1 49 0 224 292 67 58 chr12 85040085 85040205 -59242284 - MIR SINE MIR -20 242 122 602 341 119 37 chr12 85040227 85041098 -59241391 + L2 LINE L2 2110 3061 -211 288 0 0 0 chr12 85041726 85041758 -59240731 + (CA)n Simple_repeat Simple_repeat 1 32 0 2699 10 3 0 chr12 85042532 85042833 -59239656 - AluYa5 SINE Alu -9 302 1 277 311 98 33 chr12 85043155 85043277 -59239212 - MIR SINE MIR -49 159 29 2218 104 0 0 chr12 85043627 85043915 -59238574 - AluSg SINE Alu -22 288 1 268 371 0 0 chr12 85046628 85046717 -59235772 + L2 LINE L2 3225 3313 0 1015 148 49 0 chr12 85046790 85046993 -59235496 - L1MA7 LINE L1 0 6291 6079 1735 144 46 26 chr12 85046997 85047344 -59235145 + L1MA7 LINE L1 5763 6116 -175 1504 167 6 43 chr12 85047998 85048321 -59234168 + AluJb SINE Alu 1 311 -1 22 35 0 0 chr12 85048354 85048383 -59234106 + AT_rich Low_complexity Low_complexity 1 29 0 443 274 124 53 chr12 85048482 85048708 -59233781 + L2 LINE L2 3005 3246 -67 266 0 0 29 chr12 85048914 85048949 -59233540 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2263 92 4 0 chr12 85048951 85049232 -59233257 - AluSc SINE Alu -27 282 1 459 264 162 0 chr12 85050106 85050273 -59232216 + MIR SINE MIR 18 211 -51 201 147 0 0 chr12 85050600 85050634 -59231855 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 465 116 9 36 chr12 85050741 85050787 -59231702 + (TAGA)n Simple_repeat Simple_repeat 4 50 -62 1543 170 45 7 chr12 85050787 85051075 -59231414 + AluJo SINE Alu 3 301 -11 465 116 9 36 chr12 85051075 85051140 -59231349 + (TAGA)n Simple_repeat Simple_repeat 50 112 0 762 94 17 8 chr12 85051345 85051462 -59231027 + L1PA8 LINE L1 6052 6169 -3 25 0 0 0 chr12 85051654 85051679 -59230810 + AT_rich Low_complexity Low_complexity 1 25 0 243 293 107 59 chr12 85053079 85053332 -59229157 - L2 LINE L2 -1220 2094 1830 309 254 221 83 chr12 85054096 85054372 -59228117 - L1M2 LINE L1 -5700 1149 836 214 174 0 0 chr12 85054374 85054420 -59228069 + G-rich Low_complexity Low_complexity 1 46 0 1619 254 36 27 chr12 85055072 85055520 -59226969 + LTR40b LTR ERVL 11 462 0 253 304 51 58 chr12 85055577 85055715 -59226774 + MIR3 SINE MIR 12 148 -60 413 160 0 66 chr12 85055760 85055866 -59226623 - L1PA11 LINE L1 0 6174 6076 257 116 23 0 chr12 85055866 85055909 -59226580 - L1PA3 LINE L1 -97 6058 6015 219 36 0 0 chr12 85056022 85056050 -59226439 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 810 247 66 29 chr12 85056571 85056814 -59225675 - MIR SINE MIR 0 262 11 330 295 54 34 chr12 85057449 85057598 -59224891 + L3b LINE CR1 1299 1450 -133 477 62 0 0 chr12 85058176 85058241 -59224248 + (TTG)n Simple_repeat Simple_repeat 2 66 0 2177 94 4 0 chr12 85058241 85058518 -59223971 - AluY SINE Alu -33 278 1 199 404 43 11 chr12 85059342 85059436 -59223053 - L2 LINE L2 -5 3267 3171 764 283 35 4 chr12 85059502 85059728 -59222761 - MIR SINE MIR -25 237 5 444 189 21 42 chr12 85059732 85059827 -59222662 - Charlie3 DNA MER1_type -9 2701 2609 908 138 185 21 chr12 85060073 85060262 -59222227 + L1PA16 LINE L1 5946 6165 -1 200 338 110 15 chr12 85060584 85060720 -59221769 - MIR3 SINE MIR -21 187 39 528 233 0 0 chr12 85060734 85060880 -59221609 + (TA)n Simple_repeat Simple_repeat 2 147 0 310 194 97 21 chr12 85061652 85061745 -59220744 - L1MA4 LINE L1 -68 6232 6133 918 182 6 0 chr12 85061745 85061904 -59220585 - AluJb SINE Alu -16 296 137 4274 139 45 43 chr12 85061905 85062679 -59219810 - L1MA4A LINE L1 -159 6144 5366 2019 139 0 0 chr12 85062679 85062973 -59219516 - AluSg SINE Alu -16 294 1 4274 139 45 43 chr12 85062973 85063058 -59219431 - L1MA4A LINE L1 -937 5366 5283 227 324 97 42 chr12 85063628 85063844 -59218645 - L2 LINE L2 -872 2442 2215 328 258 31 62 chr12 85064684 85064878 -59217611 + L1MA9 LINE L1 5961 6148 -164 21 0 0 0 chr12 85064881 85064902 -59217587 + GC_rich Low_complexity Low_complexity 1 21 0 359 253 191 31 chr12 85067562 85067724 -59214765 + MIR SINE MIR 2 189 -73 2078 21 0 0 chr12 85068156 85068397 -59214092 - L1PA4 LINE L1 -3 6152 5912 466 336 86 13 chr12 85069253 85069485 -59213004 - MIR SINE MIR -6 256 8 2070 117 4 0 chr12 85070638 85070919 -59211570 - AluSq SINE Alu -31 282 1 366 264 80 18 chr12 85070940 85071103 -59211386 - MIR SINE MIR -55 207 35 21 57 0 0 chr12 85071152 85071187 -59211302 + AT_rich Low_complexity Low_complexity 1 35 0 235 300 116 79 chr12 85072045 85072167 -59210322 + MIR SINE MIR 59 192 -70 192 77 0 0 chr12 85072167 85072193 -59210296 + (TG)n Simple_repeat Simple_repeat 1 26 0 235 300 116 79 chr12 85072193 85072260 -59210229 + MIR SINE MIR 192 255 -7 976 222 9 9 chr12 85072355 85072585 -59209904 + MER96B DNA MER1_type? 8 237 -180 520 317 111 0 chr12 85074484 85074683 -59207806 + MIR SINE MIR 11 231 -31 520 296 131 64 chr12 85074921 85075373 -59207116 - L2 LINE L2 -16 3297 2816 416 318 108 39 chr12 85075765 85076202 -59206287 - L2 LINE L2 -692 2622 2156 410 345 61 27 chr12 85076320 85076616 -59205873 - L2 LINE L2 -884 2430 2125 1829 151 14 63 chr12 85076632 85076709 -59205780 + MER7A DNA MER2_type 2 81 -2957 1659 173 3 27 chr12 85076709 85077004 -59205485 + AluJo SINE Alu 1 288 -24 1829 151 14 63 chr12 85077004 85077290 -59205199 + MER7A DNA MER2_type 81 345 -1 359 211 21 23 chr12 85077406 85077508 -59204981 - MIR SINE MIR -56 152 42 478 274 200 49 chr12 85077662 85078111 -59204378 - Charlie8 DNA MER1_type -1872 545 29 1004 287 59 47 chr12 85078143 85078565 -59203924 - L3 LINE CR1 -350 1227 801 301 326 163 20 chr12 85079204 85079400 -59203089 - MIR SINE MIR -19 243 20 213 345 18 45 chr12 85080072 85080182 -59202307 - L3 LINE CR1 -1033 544 438 21 36 0 0 chr12 85080389 85080417 -59202072 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr12 85082309 85082335 -59200154 + AT_rich Low_complexity Low_complexity 1 26 0 250 254 56 0 chr12 85082434 85082505 -59199984 + MIR SINE MIR 137 211 -51 245 279 77 58 chr12 85082606 85082710 -59199779 + MIR SINE MIR 74 179 -83 1871 137 3 82 chr12 85083512 85083878 -59198611 - MER1B DNA MER1_type 0 337 1 340 224 94 24 chr12 85084000 85084138 -59198351 + MIR SINE MIR 100 248 -14 182 196 0 65 chr12 85084157 85084203 -59198286 + MER5A DNA MER1_type 122 164 -25 25 31 0 0 chr12 85084285 85084317 -59198172 + AT_rich Low_complexity Low_complexity 1 32 0 6325 87 12 5 chr12 85085456 85087213 -59195276 - L1PA13 LINE L1 -2 6161 4391 773 285 23 62 chr12 85087448 85087708 -59194781 + MIR SINE MIR 13 262 0 333 0 0 0 chr12 85088728 85088765 -59193724 + (A)n Simple_repeat Simple_repeat 1 37 0 184 358 46 18 chr12 85089484 85089593 -59192896 - L2 LINE L2 -2035 1279 1168 23 33 0 0 chr12 85091660 85091690 -59190799 + AT_rich Low_complexity Low_complexity 1 30 0 2100 118 7 0 chr12 85091767 85092063 -59190426 + AluSq SINE Alu 1 298 -15 465 202 73 146 chr12 85092402 85092759 -59189730 - L1MC4 LINE L1 -7 8035 7705 7872 11 1 0 chr12 85092808 85093850 -59188639 - L1HS LINE L1 -4 6151 5109 926 296 139 7 chr12 85093899 85094277 -59188212 - L1MC4 LINE L1 -645 7243 6916 216 0 0 0 chr12 85094277 85094301 -59188188 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 926 296 139 7 chr12 85094301 85094512 -59187977 - L1MC4 LINE L1 -972 6916 6488 668 131 238 0 chr12 85094517 85094673 -59187816 - AluSp SINE Alu 0 319 135 331 273 23 0 chr12 85094684 85094772 -59187717 + L1MC4 LINE L1 6614 6703 -1339 288 138 0 0 chr12 85094774 85094839 -59187650 + (TA)n Simple_repeat Simple_repeat 2 66 0 349 289 0 0 chr12 85094842 85094932 -59187557 + L1MC4 LINE L1 6614 6703 -1339 186 128 0 0 chr12 85094934 85094973 -59187516 + (TA)n Simple_repeat Simple_repeat 2 40 0 327 304 0 0 chr12 85094976 85095068 -59187421 + L1MC4 LINE L1 6614 6705 -1337 204 188 0 0 chr12 85095068 85095137 -59187352 + (TA)n Simple_repeat Simple_repeat 1 69 0 575 169 6 0 chr12 85095158 85095335 -59187154 + (TA)n Simple_repeat Simple_repeat 2 179 0 926 112 0 0 chr12 85095353 85095478 -59187011 - AluSp SINE Alu -188 125 1 935 265 65 10 chr12 85095643 85095934 -59186555 - L1MC4 LINE L1 -1966 5842 5536 23 33 0 0 chr12 85095982 85096012 -59186477 + AT_rich Low_complexity Low_complexity 1 30 0 2541 118 4 105 chr12 85096177 85096566 -59185923 - MSTA LTR MaLR -1 427 93 2463 110 8 5 chr12 85096566 85096940 -59185549 + THE1C LTR MaLR 1 375 0 2541 118 4 105 chr12 85096940 85097025 -59185464 - MSTA LTR MaLR -335 93 1 22 0 0 0 chr12 85097052 85097074 -59185415 + AT_rich Low_complexity Low_complexity 1 22 0 212 256 0 0 chr12 85098292 85098335 -59184154 - L2 LINE L2 -15 3257 3215 256 387 93 0 chr12 85099048 85099327 -59183162 + L2 LINE L2 1800 2104 -1210 262 274 118 20 chr12 85099999 85100101 -59182388 - L2 LINE L2 -10 3303 3192 1058 160 78 19 chr12 85100294 85100500 -59181989 + MER20 DNA MER1_type 1 218 -1 230 330 11 21 chr12 85101289 85101383 -59181106 + MIR SINE MIR 68 160 -102 195 329 29 0 chr12 85101380 85101450 -59181039 + MIR SINE MIR 32 103 -159 * 180 403 0 0 chr12 85103542 85103614 -59178875 - MIR SINE MIR -102 106 35 21 0 0 0 chr12 85105051 85105072 -59177417 + AT_rich Low_complexity Low_complexity 1 21 0 214 323 40 6 chr12 85105992 85106117 -59176372 + MIR SINE MIR 23 151 -57 512 318 26 7 chr12 85106128 85106279 -59176210 + MIR SINE MIR 18 171 -91 471 332 42 42 chr12 85106418 85106562 -59175927 - MIR SINE MIR -1 261 115 2061 136 0 0 chr12 85106562 85106849 -59175640 + AluSx SINE Alu 7 293 -19 471 332 42 42 chr12 85106849 85106963 -59175526 - MIR SINE MIR -146 116 3 23 33 0 0 chr12 85108017 85108047 -59174442 + AT_rich Low_complexity Low_complexity 1 30 0 714 210 35 7 chr12 85110515 85110658 -59171831 + FRAM SINE Alu 1 146 -30 357 245 167 0 chr12 85111282 85111384 -59171105 - MER5A DNA MER1_type 0 189 71 213 39 0 0 chr12 85111385 85111411 -59171078 + (TTA)n Simple_repeat Simple_repeat 2 27 0 627 140 30 0 chr12 85111411 85111511 -59170978 - FLAM_C SINE Alu -24 119 17 376 162 27 14 chr12 85111512 85111586 -59170903 - MER5A DNA MER1_type -114 75 1 317 259 74 0 chr12 85112918 85112999 -59169490 - L2 LINE L2 0 3272 3186 2102 101 0 0 chr12 85113084 85113400 -59169089 - AluSc SINE Alu 0 316 1 186 426 46 0 chr12 85116713 85116821 -59165668 - L2 LINE L2 -44 3228 3116 21 36 0 0 chr12 85116926 85116954 -59165535 + AT_rich Low_complexity Low_complexity 1 28 0 201 261 0 0 chr12 85117706 85117752 -59164737 - MIR SINE MIR -202 60 15 1068 278 75 36 chr12 85120095 85120628 -59161861 - MLT1L LTR MaLR -48 567 14 189 340 0 0 chr12 85120859 85120906 -59161583 + L2 LINE L2 3203 3249 -23 686 236 123 41 chr12 85120957 85121177 -59161312 + MIR SINE MIR 25 262 0 750 42 0 0 chr12 85121713 85121809 -59160680 - AluY SINE Alu -7 304 209 2546 46 7 0 chr12 85121895 85122197 -59160292 - AluY SINE Alu -7 304 1 766 179 111 25 chr12 85122893 85123128 -59159361 - HsTC2b DNA Tc2 -1 917 663 733 245 213 11 chr12 85123186 85123472 -59159017 - HsTC2b DNA Tc2 -543 372 29 385 358 8 0 chr12 85123848 85123968 -59158521 + MIR SINE MIR 11 131 -131 1593 106 51 16 chr12 85124296 85124551 -59157938 - L1PA10 LINE L1 0 6168 5905 385 296 184 53 chr12 85126333 85126654 -59155835 - LTR16A LTR ERVL -53 397 35 3524 127 6 2 chr12 85127189 85127733 -59154756 - L1PB1 LINE L1 0 6151 5606 3258 19 0 0 chr12 85128375 85128751 -59153738 - L1PA3 LINE L1 0 6155 5780 226 258 101 0 chr12 85128853 85128942 -59153547 - L1ME LINE L1 -639 5482 5385 3298 46 72 0 chr12 85129014 85129446 -59153043 + L1PA8 LINE L1 5710 6172 0 223 319 134 51 chr12 85129776 85129933 -59152556 + MIR SINE MIR 81 250 -12 489 225 66 86 chr12 85129988 85130232 -59152257 - MER112 DNA MER1_type -5 255 17 430 233 158 59 chr12 85130304 85130506 -59151983 + MIR SINE MIR 41 262 0 2105 119 10 7 chr12 85130576 85130878 -59151611 + AluSx SINE Alu 1 303 -9 399 41 0 0 chr12 85131867 85131916 -59150573 + (TG)n Simple_repeat Simple_repeat 2 50 0 390 284 69 0 chr12 85132280 85132396 -59150093 - MIR SINE MIR -31 231 108 756 211 12 12 chr12 85132484 85132650 -59149839 + FRAM SINE Alu 1 166 -10 2414 84 3 0 chr12 85132855 85133164 -59149325 - AluSq SINE Alu -1 312 3 27 62 0 0 chr12 85133648 85133696 -59148793 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chr12 85135154 85135179 -59147310 + AT_rich Low_complexity Low_complexity 1 25 0 778 155 88 17 chr12 85135199 85135380 -59147109 + L1MA8 LINE L1 6066 6259 -32 * 4757 131 39 20 chr12 85135362 85136840 -59145649 - L1MA8 LINE L1 -192 7059 5559 * 6057 226 55 36 chr12 85136835 85139314 -59143175 - L1MA8 LINE L1 -2459 4647 1453 2174 115 13 3 chr12 85139314 85139619 -59142870 - AluSq SINE Alu -5 308 1 6057 226 55 36 chr12 85139619 85141094 -59141395 - L1MA8 LINE L1 -5653 1453 7 807 272 143 59 chr12 85141159 85141659 -59140830 - L2 LINE L2 -25 3288 2713 2368 105 0 3 chr12 85141659 85142017 -59140472 - AluSp SINE Alu 0 313 1 807 272 143 59 chr12 85142017 85142144 -59140345 - L2 LINE L2 -600 2713 2598 192 309 0 18 chr12 85142362 85142417 -59140072 + MIR SINE MIR 24 77 -131 667 260 127 57 chr12 85142687 85143018 -59139471 + L2 LINE L2 2960 3313 0 22 0 0 73 chr12 85144141 85144182 -59138307 + AT_rich Low_complexity Low_complexity 1 38 0 999 265 27 8 chr12 85144516 85144773 -59137716 + MIR SINE MIR 1 262 0 355 369 29 35 chr12 85145699 85146046 -59136443 + L2 LINE L2 2889 3233 -39 2357 105 0 3 chr12 85146518 85146831 -59135658 - AluSx SINE Alu 0 312 1 1007 274 56 7 chr12 85146834 85147137 -59135352 + MER20B DNA MER1_type 1 318 -465 625 231 65 9 chr12 85147258 85147487 -59135002 + MER20B DNA MER1_type 514 755 -28 42 48 0 0 chr12 85148606 85148669 -59133820 + AT_rich Low_complexity Low_complexity 1 63 0 595 270 132 11 chr12 85148916 85149105 -59133384 + MIR SINE MIR 23 234 -28 204 229 83 42 chr12 85149137 85149233 -59133256 - L2 LINE L2 -17 3296 3197 256 365 101 32 chr12 85149292 85149709 -59132780 + L2 LINE L2 2801 3242 -30 205 195 0 0 chr12 85151010 85151051 -59131438 + CT-rich Low_complexity Low_complexity 4 44 0 239 303 28 9 chr12 85151206 85151221 -59131268 - L1MA10 LINE L1 0 6334 6320 2336 214 69 70 chr12 85151221 85151637 -59130852 - L1ME1 LINE L1 -5 6161 5745 2373 104 0 0 chr12 85151637 85151945 -59130544 - AluSc SINE Alu -1 308 1 2336 214 69 70 chr12 85151945 85152295 -59130194 - L1ME1 LINE L1 -421 5745 5396 850 229 19 23 chr12 85152283 85152541 -59129948 + L1ME LINE L1 4986 5242 -904 * 207 157 39 0 chr12 85152543 85152594 -59129895 + (TA)n Simple_repeat Simple_repeat 1 53 0 321 232 112 8 chr12 85152640 85152765 -59129724 + L1ME LINE L1 5303 5440 -726 271 386 99 26 chr12 85152775 85153486 -59129003 + L2 LINE L2 2289 3058 -214 186 323 65 0 chr12 85154606 85154668 -59127821 - L2 LINE L2 -66 3247 3182 302 301 61 25 chr12 85155294 85155457 -59127032 - L2 LINE L2 -1340 1974 1806 252 105 0 0 chr12 85156113 85156151 -59126338 - MLT1E1 LTR MaLR -4 620 583 2296 133 90 0 chr12 85156152 85156552 -59125937 + L1MC3 LINE L1 7342 7777 -8 1858 228 140 23 chr12 85156560 85157117 -59125372 - MLT1E1 LTR MaLR -30 624 3 1825 181 0 3 chr12 85157827 85158130 -59124359 + AluJo SINE Alu 1 302 -10 2116 95 44 10 chr12 85158199 85158495 -59123994 - AluSx SINE Alu -6 306 1 1647 204 68 42 chr12 85158661 85159116 -59123373 + MLT1C LTR MaLR 1 467 0 234 265 96 12 chr12 85159551 85159634 -59122855 - MIR SINE MIR -128 134 45 2632 102 6 3 chr12 85159809 85160172 -59122317 - THE1B LTR MaLR 0 364 1 644 141 8 0 chr12 85160731 85160852 -59121637 + GA-rich Low_complexity Low_complexity 3 124 0 2332 95 7 0 chr12 85161360 85161666 -59120823 + AluSx SINE Alu 1 308 -4 2165 66 6 35 chr12 85162121 85162438 -59120051 + AluY SINE Alu 2 309 -2 1504 214 16 38 chr12 85163351 85163721 -59118768 - MLT1A1 LTR MaLR 0 365 4 211 256 0 0 chr12 85164576 85164619 -59117870 - L2 LINE L2 -15 3257 3215 21 36 0 0 chr12 85165230 85165258 -59117231 + AT_rich Low_complexity Low_complexity 1 28 0 2898 13 0 0 chr12 85166022 85166340 -59116149 - AluYb8 SINE Alu 0 318 1 315 272 12 0 chr12 85166949 85167030 -59115459 - MIR SINE MIR -49 213 132 365 301 62 36 chr12 85167722 85167915 -59114574 - MLT1K LTR MaLR -108 480 283 325 257 50 20 chr12 85167917 85168018 -59114471 - L2 LINE L2 -20 3293 3190 457 365 32 16 chr12 85168032 85168281 -59114208 - MLT1K LTR MaLR -323 265 13 319 56 37 0 chr12 85168907 85168961 -59113528 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 510 304 91 30 chr12 85169018 85169248 -59113241 + MIR SINE MIR 4 247 -15 225 94 0 0 chr12 85169256 85169288 -59113201 + (CAT)n Simple_repeat Simple_repeat 2 33 0 979 309 27 27 chr12 85169332 85169740 -59112749 + MLT1I LTR MaLR 2 409 0 446 318 27 85 chr12 85169864 85170087 -59112402 - MLT1L LTR MaLR -242 373 178 13976 136 42 9 chr12 85170087 85170420 -59112069 + Tigger1 DNA MER2_type 2 323 -2095 378 0 0 0 chr12 85170420 85170462 -59112027 + (TC)n Simple_repeat Simple_repeat 1 42 0 13976 136 42 9 chr12 85170462 85172468 -59110021 + Tigger1 DNA MER2_type 323 2418 0 446 318 27 85 chr12 85172468 85172609 -59109880 - MLT1L LTR MaLR -437 178 30 2368 53 0 0 chr12 85174399 85174717 -59107772 - AluYb8 SINE Alu 0 324 7 21 71 0 0 chr12 85175743 85175785 -59106704 + AT_rich Low_complexity Low_complexity 1 42 0 1736 177 3 3 chr12 85176388 85176687 -59105802 + AluJo SINE Alu 1 299 -13 21 89 0 0 chr12 85178552 85178608 -59103881 + AT_rich Low_complexity Low_complexity 1 56 0 263 312 174 7 chr12 85178618 85178756 -59103733 - MIR SINE MIR -7 255 95 1419 96 5 0 chr12 85181120 85181308 -59101181 - AluY SINE Alu -15 296 108 369 276 49 102 chr12 85182056 85182281 -59100208 - MIR SINE MIR -1 261 49 25 31 0 0 chr12 85182369 85182401 -59100088 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 85185142 85185163 -59097326 + AT_rich Low_complexity Low_complexity 1 21 0 306 73 0 0 chr12 85185692 85185733 -59096756 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 215 224 20 0 chr12 85186110 85186159 -59096330 + GA-rich Low_complexity Low_complexity 3 52 0 402 304 48 0 chr12 85186316 85186441 -59096048 - MIR SINE MIR -26 236 106 27 0 0 0 chr12 85188450 85188477 -59094012 + AT_rich Low_complexity Low_complexity 1 27 0 313 256 111 0 chr12 85188746 85188836 -59093653 + L2 LINE L2 3199 3298 -15 1257 306 69 53 chr12 85190233 85190303 -59092186 + L1PBa LINE L1 3 70 -6793 1509 187 43 13 chr12 85190303 85190602 -59091887 - AluJo SINE Alu -4 308 1 1257 306 69 53 chr12 85190602 85191000 -59091489 + L1PBa LINE L1 70 460 -6403 2316 92 0 0 chr12 85191000 85191304 -59091185 + AluSc SINE Alu 5 308 -1 1257 306 69 53 chr12 85191304 85192003 -59090486 + L1PBa LINE L1 460 1190 -5673 840 283 62 10 chr12 85192024 85192331 -59090158 + L1PBa LINE L1 1284 1606 -5257 13927 208 30 29 chr12 85192350 85193332 -59089157 + L1PB3 LINE L1 23 1003 -5208 189 0 0 0 chr12 85193332 85193353 -59089136 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 13927 208 30 29 chr12 85193353 85193592 -59088897 + L1PB3 LINE L1 1003 1240 -4971 2287 95 7 0 chr12 85193592 85193886 -59088603 + AluSc SINE Alu 5 300 -9 13927 208 30 29 chr12 85193886 85198867 -59083622 + L1PB3 LINE L1 1240 6211 0 2393 206 31 18 chr12 85198983 85199473 -59083016 - MLT1D LTR MaLR -9 496 1 2257 100 0 10 chr12 85201748 85202049 -59080440 + AluSc SINE Alu 1 298 -11 653 321 29 5 chr12 85202050 85202259 -59080230 - MIR SINE MIR -2 260 47 901 229 108 9 chr12 85202471 85202694 -59079795 - MIR SINE MIR 0 262 18 23 33 0 0 chr12 85204001 85204031 -59078458 + AT_rich Low_complexity Low_complexity 1 30 0 33 25 0 0 chr12 85205461 85205501 -59076988 + AT_rich Low_complexity Low_complexity 1 40 0 28 29 0 0 chr12 85207148 85207183 -59075306 + AT_rich Low_complexity Low_complexity 1 35 0 312 238 32 38 chr12 85207896 85208081 -59074408 + L1M4 LINE L1 5193 5376 -770 2258 64 0 41 chr12 85210225 85210609 -59071880 + AluY SINE Alu 1 372 0 21 95 0 0 chr12 85211351 85211414 -59071075 + AT_rich Low_complexity Low_complexity 1 63 0 495 257 198 36 chr12 85215156 85215409 -59067080 + MER69 DNA AcHobo 83 376 -850 422 248 19 9 chr12 85215462 85215567 -59066922 + MER69 DNA AcHobo 2420 2525 -1 901 229 108 9 chr12 85215969 85216192 -59066297 - MIR SINE MIR 0 262 18 411 283 174 28 chr12 85216815 85217027 -59065462 - MIR SINE MIR -3 259 17 315 0 0 0 chr12 85219682 85219717 -59062772 + (TA)n Simple_repeat Simple_repeat 2 36 0 202 328 30 0 chr12 85220427 85220494 -59061995 + MIR SINE MIR 182 250 -12 334 274 113 8 chr12 85223011 85223135 -59059354 + L2 LINE L2 3136 3272 0 24 53 0 0 chr12 85223707 85223745 -59058744 + AT_rich Low_complexity Low_complexity 1 38 0 194 216 0 0 chr12 85224386 85224423 -59058066 - MIR SINE MIR 0 262 226 268 263 50 12 chr12 85224496 85224576 -59057913 - MIR SINE MIR -133 129 47 2156 107 0 3 chr12 85224597 85224886 -59057603 - AluSx SINE Alu -24 288 1 322 242 11 22 chr12 85224981 85225072 -59057417 + L2 LINE L2 3209 3298 -15 351 253 0 53 chr12 85226268 85226363 -59056126 - L2 LINE L2 0 3272 3183 208 140 40 20 chr12 85226486 85226536 -59055953 + G-rich Low_complexity Low_complexity 2 52 0 1850 87 71 15 chr12 85227132 85227398 -59055091 + AluSp SINE Alu 1 281 -32 819 56 35 21 chr12 85227399 85227543 -59054946 + (GAAA)n Simple_repeat Simple_repeat 2 147 0 11197 27 2 1 chr12 85228727 85230068 -59052421 - L1PA3 LINE L1 -830 5316 3974 6755 30 11 1 chr12 85230068 85230894 -59051595 + L1PA3 LINE L1 5310 6152 -3 180 0 0 0 chr12 85230904 85230924 -59051565 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 395 232 152 24 chr12 85232588 85232752 -59049737 + MIR SINE MIR 70 254 -8 2547 52 0 3 chr12 85232755 85233065 -59049424 + AluY SINE Alu 1 309 -2 2018 125 20 7 chr12 85233081 85233377 -59049112 + AluSx SINE Alu 1 300 -12 1346 351 67 21 chr12 85233380 85233395 -59049094 - MER115 DNA AcHobo -100 593 580 2334 158 45 26 chr12 85233395 85233819 -59048670 + MSTB1 LTR MaLR 1 432 0 1346 351 67 21 chr12 85233819 85234370 -59048119 - MER115 DNA AcHobo -113 580 1 347 264 107 21 chr12 85234401 85234541 -59047948 - MIR SINE MIR -36 226 75 322 335 124 57 chr12 85234733 85235169 -59047320 + L2 LINE L2 2808 3272 0 2398 100 27 16 chr12 85235444 85235815 -59046674 - THE1C LTR MaLR 0 375 1 216 97 0 0 chr12 85237610 85237641 -59044848 + (A)n Simple_repeat Simple_repeat 1 31 0 351 253 0 53 chr12 85239011 85239106 -59043383 - L2 LINE L2 0 3272 3183 208 140 40 20 chr12 85239229 85239279 -59043210 + G-rich Low_complexity Low_complexity 2 52 0 1846 87 71 15 chr12 85239875 85240141 -59042348 + AluSp SINE Alu 1 281 -32 963 50 31 19 chr12 85240142 85240302 -59042187 + (GAAA)n Simple_repeat Simple_repeat 2 163 0 10765 25 2 1 chr12 85241486 85242827 -59039662 - L1PA3 LINE L1 -830 5316 3974 7416 15 0 0 chr12 85242827 85243661 -59038828 + L1PA3 LINE L1 5310 6152 -3 180 0 0 0 chr12 85243671 85243691 -59038798 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 393 232 152 24 chr12 85245353 85245517 -59036972 + MIR SINE MIR 70 254 -8 2825 10 0 0 chr12 85245520 85245826 -59036663 + AluY SINE Alu 1 306 -5 1139 158 33 32 chr12 85246174 85246804 -59035685 + L1MB7 LINE L1 5466 6174 -10 38 39 0 0 chr12 85246806 85246858 -59035631 + AT_rich Low_complexity Low_complexity 1 52 0 1371 197 0 24 chr12 85246858 85247107 -59035382 - AluJo SINE Alu -27 285 43 1797 163 145 18 chr12 85247649 85248146 -59034343 - L1ME2 LINE L1 -2 6162 5603 228 133 22 0 chr12 85248551 85248596 -59033893 + MIR SINE MIR 97 142 -66 2044 142 18 0 chr12 85249276 85249613 -59032876 - MER84 LTR ERVI 0 507 165 878 177 24 0 chr12 85249756 85249920 -59032569 - MER84 LTR ERVI -338 169 2 432 132 26 13 chr12 85249920 85249992 -59032497 - MER84 LTR ERVI -433 74 2 643 269 132 5 chr12 85250901 85251113 -59031376 - MIR SINE MIR -17 245 7 1890 98 102 18 chr12 85252267 85252552 -59029937 - AluSc SINE Alu 0 309 1 348 317 77 33 chr12 85252734 85252917 -59029572 - MIR SINE MIR -65 197 7 398 308 190 8 chr12 85255306 85255569 -59026920 + L1ME4a LINE L1 5734 6044 -77 2387 88 0 3 chr12 85255572 85255878 -59026611 - AluSg SINE Alu -5 305 1 552 288 117 5 chr12 85257315 85257520 -59024969 + MIR SINE MIR 19 246 -16 376 350 133 11 chr12 85258897 85259077 -59023412 - MIR SINE MIR -40 222 21 224 333 79 42 chr12 85259810 85259999 -59022490 - L2 LINE L2 -779 2535 2340 2526 57 0 0 chr12 85260193 85260491 -59021998 + AluY SINE Alu 1 298 -13 248 311 16 0 chr12 85261028 85261089 -59021400 - L2 LINE L2 -25 3247 3186 762 289 32 12 chr12 85261149 85261398 -59021091 - MIR SINE MIR -3 259 6 277 315 176 12 chr12 85262090 85262288 -59020201 + MIR SINE MIR 16 254 -8 897 256 18 9 chr12 85262302 85262525 -59019964 - MIR SINE MIR -5 257 33 1978 178 19 11 chr12 85264739 85265099 -59017390 - MLT1A1 LTR MaLR 0 365 3 205 225 0 0 chr12 85265699 85265739 -59016750 - L2 LINE L2 -9 3263 3224 238 288 119 34 chr12 85266062 85266239 -59016250 - L2 LINE L2 -189 3083 2892 897 179 18 24 chr12 85268271 85268439 -59014050 - AluJo SINE Alu -28 284 118 624 188 15 45 chr12 85268469 85268602 -59013887 - AluJo SINE Alu -173 129 1 1663 149 55 42 chr12 85269892 85270200 -59012289 - AluJo SINE Alu 0 312 1 393 153 0 0 chr12 85270230 85270302 -59012187 + CT-rich Low_complexity Low_complexity 1 72 0 9731 51 4 2 chr12 85270302 85272317 -59010172 - L1PA6 LINE L1 -4 6150 4133 21 36 0 0 chr12 85272841 85272869 -59009620 + AT_rich Low_complexity Low_complexity 1 28 0 1065 209 65 59 chr12 85272937 85273258 -59009231 - MLT1J1 LTR MaLR -121 325 3 2211 72 0 0 chr12 85273285 85273548 -59008941 - AluY SINE Alu -1 310 48 1225 330 205 20 chr12 85273607 85273855 -59008634 - L2 LINE L2 -337 2977 2776 1753 183 3 0 chr12 85273855 85274155 -59008334 - AluJo SINE Alu -8 304 4 1225 330 205 20 chr12 85274155 85274983 -59007506 - L2 LINE L2 -538 2776 1702 650 294 75 9 chr12 85274986 85275214 -59007275 - MIR SINE MIR -1 261 19 317 233 33 33 chr12 85275287 85275437 -59007052 - Charlie7 DNA MER1_type -36 2576 2427 * 338 129 0 16 chr12 85275417 85275479 -59007010 - Charlie7 DNA MER1_type -2508 104 44 258 106 64 0 chr12 85275567 85275614 -59006875 - MLT1E3 LTR MaLR -26 598 549 392 229 12 0 chr12 85275917 85276000 -59006489 + L2 LINE L2 3177 3260 -12 1857 153 0 13 chr12 85276077 85276384 -59006105 - AluJb SINE Alu -9 303 1 191 287 213 32 chr12 85278426 85278520 -59003969 - L2 LINE L2 -4 3268 3158 213 146 0 0 chr12 85278638 85278686 -59003803 + (T)n Simple_repeat Simple_repeat 1 48 0 897 268 82 32 chr12 85278866 85279246 -59003243 + LTR16A LTR ERVL 52 450 0 982 317 97 22 chr12 85279319 85279943 -59002546 - L2 LINE L2 -44 3269 2583 512 257 9 0 chr12 85279943 85280056 -59002433 + MER81 DNA DNA 1 114 0 982 317 97 22 chr12 85280056 85280133 -59002356 - L2 LINE L2 -730 2583 2513 264 312 0 11 chr12 85280348 85280441 -59002048 + (TGG)n Simple_repeat Simple_repeat 1 92 0 1035 68 0 53 chr12 85280494 85280684 -59001805 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 749 138 30 6 chr12 85280684 85280851 -59001638 + GA-rich Low_complexity Low_complexity 1 171 0 218 300 33 56 chr12 85281147 85281237 -59001252 + MIR SINE MIR 89 176 -86 29 28 0 0 chr12 85281407 85281443 -59001046 + AT_rich Low_complexity Low_complexity 1 36 0 2700 29 0 0 chr12 85281871 85282179 -59000310 - AluY SINE Alu -3 308 1 553 259 0 0 chr12 85285337 85285468 -58997021 - MER117 DNA MER1_type -66 131 1 558 246 142 22 chr12 85286684 85286867 -58995622 + MIR SINE MIR 45 249 -13 1668 173 112 0 chr12 85287368 85287681 -58994808 - MER7A DNA MER2_type 0 346 1 272 333 20 29 chr12 85288440 85288542 -58993947 - MIR SINE MIR -70 192 92 311 294 15 114 chr12 85289939 85290140 -58992349 + MER5A DNA MER1_type 7 187 -2 234 315 34 0 chr12 85291090 85291179 -58991310 - L2 LINE L2 0 3272 3181 976 213 5 19 chr12 85291191 85291398 -58991091 - MIR SINE MIR -31 231 28 1804 156 0 33 chr12 85293457 85293764 -58988725 + AluJo SINE Alu 1 297 -15 233 239 70 42 chr12 85293896 85293967 -58988522 + L2 LINE L2 3150 3222 -50 296 306 83 0 chr12 85295222 85295379 -58987110 - L1MC4a LINE L1 -1886 5922 5753 298 223 58 16 chr12 85295395 85295516 -58986973 + L1M4 LINE L1 4457 4582 -1564 271 263 173 7 chr12 85296672 85296811 -58985678 + MIR SINE MIR 98 259 -3 477 0 0 0 chr12 85296909 85296962 -58985527 + (TG)n Simple_repeat Simple_repeat 2 54 0 7501 24 0 0 chr12 85297926 85299011 -58983478 - L1PA3 LINE L1 -7 6148 5055 1606 172 52 14 chr12 85299213 85299504 -58982985 + AluJb SINE Alu 1 302 -10 646 321 114 14 chr12 85300131 85300421 -58982068 + L3 LINE CR1 1031 1349 -228 2504 58 0 3 chr12 85300494 85300804 -58981685 + AluY SINE Alu 1 309 -2 408 310 47 47 chr12 85301069 85301282 -58981207 - MIR SINE MIR -36 226 14 192 293 27 27 chr12 85302195 85302270 -58980219 + L2 LINE L2 3234 3308 -5 251 270 0 0 chr12 85302313 85302376 -58980113 + (AATTG)n Simple_repeat Simple_repeat 5 67 0 365 292 96 0 chr12 85303456 85303634 -58978855 - Charlie7 DNA MER1_type -225 2387 2193 1168 286 80 6 chr12 85303775 85304251 -58978238 - Charlie7 DNA MER1_type -2036 576 66 1465 190 53 16 chr12 85304897 85305218 -58977271 - MER58B DNA MER1_type -1 340 8 358 296 151 38 chr12 85305535 85305694 -58976795 + MIR SINE MIR 23 201 -7 4437 58 2 0 chr12 85306147 85306700 -58975789 - MER41A LTR ERV1 0 554 1 316 189 0 0 chr12 85307024 85307077 -58975412 - L2 LINE L2 0 3313 3261 2111 84 0 0 chr12 85307112 85307401 -58975088 - AluY SINE Alu 0 311 23 297 269 9 46 chr12 85307808 85307916 -58974573 - L2 LINE L2 -924 2390 2287 313 280 40 30 chr12 85309904 85310004 -58972485 - MIR SINE MIR -128 134 34 1227 175 74 61 chr12 85310403 85310700 -58971789 - AluJo SINE Alu 0 302 2 243 286 48 0 chr12 85310987 85311071 -58971418 - MIR SINE MIR -48 214 127 1607 175 32 23 chr12 85313116 85313424 -58969065 - MER7A DNA MER2_type -25 321 13 2209 114 7 0 chr12 85315001 85315298 -58967191 - AluSx SINE Alu -11 301 3 207 0 0 0 chr12 85315740 85315763 -58966726 + (TTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr12 85316231 85316254 -58966235 + AT_rich Low_complexity Low_complexity 1 23 0 1762 64 4 0 chr12 85316367 85316600 -58965889 - L1PA7 LINE L1 -2 6152 5919 304 353 82 0 chr12 85317387 85317509 -58964980 + MIR3 SINE MIR 49 180 -28 1574 180 0 51 chr12 85318426 85318742 -58963747 + AluJb SINE Alu 1 300 -12 723 297 81 5 chr12 85319443 85319665 -58962824 - MIR SINE MIR -12 250 12 2458 69 0 3 chr12 85319940 85320246 -58962243 - AluY SINE Alu -6 305 1 306 292 88 0 chr12 85320246 85320383 -58962106 - L1MC/D LINE L1 -2076 5732 5584 943 239 249 30 chr12 85320407 85321014 -58961475 - HAL1 LINE L1 0 2507 1768 219 273 0 45 chr12 85321040 85321106 -58961383 + MIR SINE MIR 73 135 -73 415 253 82 41 chr12 85321166 85321336 -58961153 - MER5B DNA MER1_type 0 178 2 6994 57 10 0 chr12 85322818 85323858 -58958631 - L1PA6 LINE L1 0 6154 5113 23 33 0 0 chr12 85325003 85325033 -58957456 + AT_rich Low_complexity Low_complexity 1 30 0 2070 136 3 0 chr12 85325225 85325533 -58956956 - AluSx SINE Alu -3 309 1 842 154 15 0 chr12 85325571 85325701 -58956788 - FLAM_C SINE Alu -11 132 1 36 40 0 0 chr12 85326348 85326398 -58956091 + AT_rich Low_complexity Low_complexity 1 50 0 364 260 89 41 chr12 85326399 85326545 -58955944 - MER5B DNA MER1_type 0 178 26 703 308 92 39 chr12 85326745 85327244 -58955245 - L2 LINE L2 -10 3303 2738 1856 141 13 7 chr12 85327244 85327542 -58954947 - AluJb SINE Alu -12 300 1 703 308 92 39 chr12 85327542 85327647 -58954842 - L2 LINE L2 -575 2738 2640 23 0 0 0 chr12 85329468 85329491 -58952998 + AT_rich Low_complexity Low_complexity 1 23 0 590 120 22 0 chr12 85329624 85329716 -58952773 - FLAM_C SINE Alu -39 104 11 1142 148 39 127 chr12 85330968 85331251 -58951238 - MLT2D LTR ERVL -2 412 155 830 156 21 0 chr12 85331232 85331373 -58951116 - MLT1B LTR MaLR -244 146 3 * 192 40 0 0 chr12 85331414 85331439 -58951050 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 789 239 44 0 chr12 85331476 85331656 -58950833 + MER5A DNA MER1_type 1 188 -1 21 36 0 0 chr12 85333143 85333171 -58949318 + AT_rich Low_complexity Low_complexity 1 28 0 255 289 26 35 chr12 85333230 85333344 -58949145 - L2 LINE L2 -6 3266 3154 579 254 80 47 chr12 85333371 85333647 -58948842 - MLT1L LTR MaLR -4 611 327 831 248 66 4 chr12 85334413 85334639 -58947850 + MIR SINE MIR 23 262 0 603 279 50 25 chr12 85334684 85334885 -58947604 + MIR SINE MIR 31 236 -26 611 216 120 0 chr12 85336074 85336241 -58946248 - MER5A DNA MER1_type -1 188 2 183 245 163 20 chr12 85336622 85336720 -58945769 + MIR SINE MIR 87 198 -64 1019 174 0 11 chr12 85337634 85337812 -58944677 + FRAM SINE Alu 1 176 0 1318 191 14 48 chr12 85339100 85339239 -58943250 + AluJo SINE Alu 1 126 -186 180 26 26 51 chr12 85339239 85339278 -58943211 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1318 191 14 48 chr12 85339278 85339432 -58943057 + AluJo SINE Alu 126 284 -28 443 246 216 39 chr12 85340906 85341138 -58941351 - MER69 DNA AcHobo -2171 355 83 219 139 0 0 chr12 85342643 85342679 -58939810 + (T)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr12 85343127 85343150 -58939339 + AT_rich Low_complexity Low_complexity 1 23 0 1213 108 0 75 chr12 85344298 85344511 -58937978 + MER107 DNA MER1_type 1 197 0 785 244 66 26 chr12 85344986 85345405 -58937084 - MLT1J LTR MaLR -38 473 18 380 296 104 9 chr12 85345578 85345906 -58936583 - L1ME4a LINE L1 -14 6107 5749 272 156 0 0 chr12 85345932 85345977 -58936512 + MER50 LTR ERV1 1 45 -689 * 3401 137 27 24 chr12 85345959 85346556 -58935933 - MER50 LTR ERV1 -135 599 1 348 261 150 29 chr12 85346577 85346884 -58935605 - L1ME4a LINE L1 -392 5729 5386 216 67 0 0 chr12 85348286 85348316 -58934173 + (TG)n Simple_repeat Simple_repeat 2 31 0 219 245 61 0 chr12 85348852 85348901 -58933588 - L2 LINE L2 -64 3208 3157 260 221 13 26 chr12 85348981 85349058 -58933431 + (TTTA)n Simple_repeat Simple_repeat 1 76 0 449 329 40 4 chr12 85349493 85349721 -58932768 - L1MC/D LINE L1 -1997 5811 5576 243 302 104 58 chr12 85351293 85351601 -58930888 + L2 LINE L2 2512 2833 -481 340 260 0 0 chr12 85351817 85351890 -58930599 - MER5A DNA MER1_type -78 111 39 659 236 17 22 chr12 85352770 85352948 -58929541 + MER5B DNA MER1_type 2 178 0 428 258 220 38 chr12 85353846 85354268 -58928221 - L1MD2 LINE L1 -411 5948 5448 282 204 0 0 chr12 85355556 85355605 -58926884 - HAL1b LINE L1 -901 447 399 195 114 0 0 chr12 85355624 85355659 -58926830 + (T)n Simple_repeat Simple_repeat 1 35 0 607 266 85 21 chr12 85355690 85355972 -58926517 - HAL1b LINE L1 -966 382 83 180 0 0 0 chr12 85356611 85356631 -58925858 + (TC)n Simple_repeat Simple_repeat 2 21 0 334 242 24 57 chr12 85356726 85356850 -58925639 - L2 LINE L2 -6 3307 3188 634 113 8 89 chr12 85357994 85358118 -58924371 - MSTB1 LTR MaLR -318 114 1 2000 129 20 7 chr12 85358136 85358431 -58924058 - AluSx SINE Alu -13 299 1 1957 64 0 4 chr12 85358447 85358696 -58923793 - AluY SINE Alu -2 309 62 273 239 15 0 chr12 85358701 85358768 -58923721 + MER115 DNA AcHobo 601 668 -25 194 300 46 77 chr12 85359325 85359432 -58923057 + L2 LINE L2 3134 3238 -34 1925 154 3 6 chr12 85359432 85359743 -58922746 + AluJo SINE Alu 1 310 -2 194 300 46 77 chr12 85359743 85359765 -58922724 + L2 LINE L2 3238 3259 -13 390 214 11 45 chr12 85359775 85359864 -58922625 - L2 LINE L2 -1 3271 3186 198 103 0 0 chr12 85359905 85359934 -58922555 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2082 104 3 21 chr12 85360433 85360771 -58921718 - AluSq SINE Alu 0 333 1 23 0 0 0 chr12 85361009 85361032 -58921457 + AT_rich Low_complexity Low_complexity 1 23 0 2087 44 0 11 chr12 85361139 85361410 -58921079 - L1PA6 LINE L1 0 6154 5887 2239 117 0 0 chr12 85361542 85361840 -58920649 - AluSg SINE Alu -12 298 1 388 316 51 75 chr12 85363746 85364120 -58918369 + MLT1K LTR MaLR 20 384 -204 757 141 0 30 chr12 85364261 85364396 -58918093 - FLAM_C SINE Alu -1 132 2 767 295 52 59 chr12 85364443 85364647 -58917842 - MLT1J LTR MaLR -107 404 203 991 181 37 19 chr12 85364647 85364862 -58917627 - MER20 DNA MER1_type 0 219 1 767 295 52 59 chr12 85364862 85365064 -58917425 - MLT1J LTR MaLR -308 203 1 186 283 192 33 chr12 85365886 85366006 -58916483 - L2 LINE L2 -206 3066 2928 909 256 40 5 chr12 85368557 85368780 -58913709 - MIR SINE MIR -31 231 1 2103 110 29 0 chr12 85368867 85369148 -58913341 + AluSx SINE Alu 1 289 -23 384 77 0 0 chr12 85370209 85370261 -58912228 + (TTG)n Simple_repeat Simple_repeat 3 54 0 2006 116 4 0 chr12 85370271 85370538 -58911951 - AluSx SINE Alu -44 268 1 594 274 171 20 chr12 85370613 85370880 -58911609 + L2 LINE L2 2793 3086 -227 341 209 173 18 chr12 85371527 85371637 -58910852 - L2 LINE L2 -1 3312 3186 263 253 24 36 chr12 85371661 85371744 -58910745 + MIR3 SINE MIR 109 190 -18 397 259 42 129 chr12 85372092 85372502 -58909987 + L2 LINE L2 2924 3297 -16 180 111 0 0 chr12 85372506 85372533 -58909956 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 315 241 0 35 chr12 85372576 85372663 -58909826 - MER63 DNA MER1_type 0 1062 979 231 263 114 35 chr12 85372663 85372777 -58909712 - MER63 DNA MER1_type -86 750 2 29 60 0 0 chr12 85372838 85372888 -58909601 + AT_rich Low_complexity Low_complexity 1 50 0 3695 101 31 2 chr12 85374098 85374670 -58907819 - L1MA5A LINE L1 -2 6295 5707 209 109 62 0 chr12 85374797 85374861 -58907628 + (TA)n Simple_repeat Simple_repeat 1 68 0 396 0 0 0 chr12 85374915 85374959 -58907530 + (TA)n Simple_repeat Simple_repeat 2 45 0 385 257 0 29 chr12 85374976 85375081 -58907408 - MIR SINE MIR -49 213 112 278 252 185 25 chr12 85375069 85375188 -58907301 + MIR SINE MIR 113 250 -12 * 611 205 97 26 chr12 85375296 85375491 -58906998 + MER3 DNA MER1_type 1 209 0 207 308 0 0 chr12 85377156 85377208 -58905281 + L2 LINE L2 3221 3272 0 411 268 234 14 chr12 85377491 85377700 -58904789 + MIR SINE MIR 6 260 -2 315 0 0 0 chr12 85378848 85378883 -58903606 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr12 85379075 85379096 -58903393 + AT_rich Low_complexity Low_complexity 1 21 0 2408 84 0 0 chr12 85381514 85381823 -58900666 - AluSc SINE Alu 0 309 1 668 272 62 23 chr12 85381866 85382248 -58900241 + LTR16A LTR ERVL 16 450 0 190 360 45 11 chr12 85382262 85382351 -58900138 - L2 LINE L2 -213 3059 2968 424 244 140 109 chr12 85382821 85383309 -58899180 - LTR33A LTR ERVL -20 503 35 588 334 72 50 chr12 85384208 85384609 -58897880 - MLT1K LTR MaLR -53 535 126 263 116 23 0 chr12 85384901 85384944 -58897545 - Alu SINE Alu -9 293 250 598 214 201 46 chr12 85384954 85385363 -58897126 - SATR1 Satellite Satellite -1 472 1 1182 220 202 43 chr12 85385392 85387143 -58895346 + SATR1 Satellite Satellite 1 2029 -2 1395 189 193 70 chr12 85387177 85388334 -58894155 + SATR1 Satellite Satellite 1 1299 -2 1280 205 190 49 chr12 85388347 85388996 -58893493 + SATR1 Satellite Satellite 1 740 -2 1288 207 272 17 chr12 85389038 85390117 -58892372 + SATR1 Satellite Satellite 1 1354 -1 1245 214 240 26 chr12 85390140 85393820 -58888669 - SATR1 Satellite Satellite -157 4467 1 2398 174 105 23 chr12 85393838 85397263 -58885226 + SATR1 Satellite Satellite 1 3705 -2 2551 153 106 27 chr12 85397287 85399424 -58883065 + SATR1 Satellite Satellite 1 2305 0 2484 152 101 12 chr12 85399454 85400957 -58881532 - SATR1 Satellite Satellite -145 1636 1 2195 187 122 40 chr12 85400970 85402519 -58879970 + SATR1 Satellite Satellite 1 1676 -45 1464 205 228 37 chr12 85402569 85403391 -58879098 + SATR1 Satellite Satellite 1 979 -2 1330 201 251 21 chr12 85403424 85406056 -58876433 + SATR1 Satellite Satellite 1 3236 -4 619 237 211 0 chr12 85406069 85406259 -58876230 + SATR1 Satellite Satellite 145 374 -96 1273 182 235 49 chr12 85406285 85406887 -58875602 + SATR1 Satellite Satellite 1 713 -170 586 205 48 48 chr12 85406944 85407110 -58875379 - MER58C DNA MER1_type -5 210 45 2060 175 10 47 chr12 85408208 85408613 -58873876 + MLT1B LTR MaLR 1 390 0 2071 153 50 60 chr12 85408981 85409399 -58873090 - MLT2D LTR ERVL 0 414 1 845 221 35 10 chr12 85409453 85409652 -58872837 + MER33 DNA MER1_type 1 204 -120 1494 179 57 18 chr12 85409653 85410094 -58872395 - MLT1D LTR MaLR -2 503 1 469 117 12 166 chr12 85410094 85410241 -58872248 + MER33 DNA MER1_type 241 362 -1 1948 160 0 3 chr12 85410330 85410636 -58871853 - AluJb SINE Alu -7 305 1 2359 267 115 27 chr12 85410642 85410722 -58871767 + L2 LINE L2 2115 2187 -1126 242 28 0 28 chr12 85410722 85410758 -58871731 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1645 157 3 31 chr12 85410758 85411045 -58871444 - AluJo SINE Alu -33 279 1 2359 267 115 27 chr12 85411045 85411862 -58870627 + L2 LINE L2 2187 3137 -176 2025 104 4 0 chr12 85411862 85412130 -58870359 - AluSx SINE Alu -6 306 38 2359 267 115 27 chr12 85412130 85412304 -58870185 + L2 LINE L2 3137 3294 -19 2317 116 0 0 chr12 85413160 85413463 -58869026 + AluSg SINE Alu 1 303 -7 204 40 0 0 chr12 85413714 85413739 -58868750 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 826 210 14 0 chr12 85413739 85413882 -58868607 - FRAM SINE Alu -31 145 1 808 247 60 70 chr12 85413952 85414349 -58868140 - MLT1L LTR MaLR -4 611 219 1209 217 204 46 chr12 85415128 85416880 -58865609 + SATR1 Satellite Satellite 1 2028 -2 1412 198 218 47 chr12 85416914 85418793 -58863696 + SATR1 Satellite Satellite 1 1557 -2278 2134 101 40 0 chr12 85418793 85419089 -58863400 - AluY SINE Alu -3 308 1 1412 198 218 47 chr12 85419089 85420189 -58862300 + SATR1 Satellite Satellite 1557 3835 0 1053 192 174 81 chr12 85420218 85420625 -58861864 + SATR1 Satellite Satellite 25 469 -1 586 205 48 48 chr12 85420682 85420848 -58861641 - MER58C DNA MER1_type -5 210 45 1542 109 147 4 chr12 85421702 85421940 -58860549 - AluSg SINE Alu -38 272 1 388 159 14 0 chr12 85421988 85422057 -58860432 + AluS SINE Alu 232 301 -1 312 137 0 0 chr12 85422061 85422112 -58860377 + (GGGGA)n Simple_repeat Simple_repeat 4 54 0 186 254 17 51 chr12 85424039 85424098 -58858391 - L2 LINE L2 0 3272 3216 296 286 118 0 chr12 85424569 85424688 -58857801 + MLT1L LTR MaLR 133 265 -350 268 311 47 0 chr12 85424734 85424840 -58857649 + MLT1L LTR MaLR 482 592 -23 408 180 10 50 chr12 85425087 85425187 -58857302 + HAL1 LINE L1 2408 2503 -4 1813 174 10 3 chr12 85425562 85425867 -58856622 - 7SLRNA srpRNA srpRNA -13 307 1 455 278 56 79 chr12 85426400 85426814 -58855675 + L1MC4a LINE L1 5599 6028 -93 242 248 203 30 chr12 85427087 85427220 -58855269 - MIR SINE MIR -49 213 58 1756 117 110 0 chr12 85427561 85427825 -58854664 - AluSg SINE Alu -17 293 1 1215 174 66 0 chr12 85429315 85429527 -58852962 + MER7A DNA MER2_type 1 224 -122 1697 99 0 0 chr12 85429527 85429749 -58852740 + AluSg/x SINE Alu 91 312 0 757 341 99 11 chr12 85430021 85430487 -58852002 + L2 LINE L2 2411 2917 -397 2402 81 0 3 chr12 85430574 85430872 -58851617 - AluSg1 SINE Alu -12 297 1 378 286 25 8 chr12 85430957 85431076 -58851413 + L2 LINE L2 3179 3299 -14 204 370 37 9 chr12 85432878 85432986 -58849503 - L2 LINE L2 -226 3046 2936 2532 57 0 0 chr12 85433327 85433627 -58848862 - AluY SINE Alu -11 300 1 233 309 12 48 chr12 85434217 85434301 -58848188 - L3 LINE CR1 -2 1575 1495 612 194 32 176 chr12 85434359 85434443 -58848046 + MER5A DNA MER1_type 4 40 -149 766 192 0 8 chr12 85434443 85434568 -58847921 - FLAM_C SINE Alu -9 124 1 612 194 32 176 chr12 85434568 85434699 -58847790 + MER5A DNA MER1_type 40 188 -1 235 254 18 0 chr12 85434746 85434801 -58847688 - MLT1K LTR MaLR -48 540 485 2242 105 7 0 chr12 85435703 85435997 -58846492 + AluSc SINE Alu 1 296 -13 1704 243 61 36 chr12 85436284 85436583 -58845906 + MLT1J LTR MaLR 2 319 -192 638 239 86 20 chr12 85436583 85436780 -58845709 - MER63A DNA MER1_type 0 210 1 1704 243 61 36 chr12 85436780 85436974 -58845515 + MLT1J LTR MaLR 319 507 -4 2147 123 7 0 chr12 85437290 85437583 -58844906 - AluSq SINE Alu -18 295 1 3766 49 0 7 chr12 85438341 85438792 -58843697 + LTR7 LTR ERV1 1 448 -2 3262 99 65 47 chr12 85439479 85440006 -58842483 - MER41A LTR ERV1 0 554 19 239 254 16 32 chr12 85441042 85441105 -58841384 + polypyrimidine Low_complexity Low_complexity 1 62 0 1621 185 16 32 chr12 85441796 85442175 -58840314 + AluJo SINE Alu 4 377 0 2227 92 3 19 chr12 85442197 85442512 -58839977 + AluSx SINE Alu 1 310 -2 243 299 175 10 chr12 85444129 85444226 -58838263 - L2 LINE L2 -2 3270 3158 3320 179 42 45 chr12 85444227 85444991 -58837498 + L1MB7 LINE L1 5406 6167 -17 367 361 72 27 chr12 85445071 85445495 -58836994 - L2 LINE L2 -215 3057 2606 513 259 82 22 chr12 85445766 85445998 -58836491 + MIR SINE MIR 6 251 -11 6943 143 109 103 chr12 85446047 85447728 -58834761 - pTR5 LTR ERV1 -6 2432 743 2211 135 0 0 chr12 85447909 85448221 -58834268 + AluSq SINE Alu 1 312 -1 2286 99 10 0 chr12 85449396 85449698 -58832791 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr12 85449869 85449897 -58832592 + AT_rich Low_complexity Low_complexity 1 28 0 209 108 27 0 chr12 85451474 85451511 -58830978 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 185 320 39 0 chr12 85452458 85452536 -58829953 - MIR SINE MIR -95 167 87 1208 172 0 14 chr12 85452693 85452908 -58829581 + AluJb SINE Alu 87 298 -14 180 337 30 20 chr12 85453119 85453220 -58829269 + MIR SINE MIR 51 152 -110 1603 143 9 67 chr12 85453845 85454160 -58828329 - AluJo SINE Alu -15 297 1 189 0 0 0 chr12 85454379 85454400 -58828089 + (A)n Simple_repeat Simple_repeat 1 21 0 8695 137 86 47 chr12 85454534 85456166 -58826323 + pTR5 LTR ERV1 743 2438 0 235 310 35 0 chr12 85456622 85456709 -58825780 - MIR SINE MIR -94 168 79 1795 152 0 27 chr12 85457054 85457351 -58825138 + AluJb SINE Alu 1 289 -23 1656 187 0 17 chr12 85457567 85457866 -58824623 - AluJb SINE Alu -18 294 1 4358 108 143 100 chr12 85457950 85459308 -58823181 + pTR5 LTR ERV1 740 2438 0 560 269 91 11 chr12 85460363 85460549 -58821940 - MIR SINE MIR -40 222 22 2360 87 0 10 chr12 85461476 85461786 -58820703 + AluSx SINE Alu 1 307 -5 2878 276 116 23 chr12 85462177 85462250 -58820239 + L1M2 LINE L1 1 66 -7143 2054 120 11 3 chr12 85462250 85462553 -58819936 + AluSg SINE Alu 2 306 0 2878 276 116 23 chr12 85462553 85463747 -58818742 + L1M2 LINE L1 66 1975 -5234 2139 130 3 7 chr12 85463747 85464048 -58818441 + AluSx SINE Alu 1 300 -12 2878 276 116 23 chr12 85464048 85464122 -58818367 + L1M2 LINE L1 1975 2041 -5168 14548 73 8 4 chr12 85464258 85466081 -58816408 - HERVL-A1 LTR ERVL -3497 2157 328 2865 72 24 8 chr12 85466081 85466454 -58816035 - MLT2A1 LTR ERVL -65 379 1 180 0 0 0 chr12 85466485 85466505 -58815984 + (T)n Simple_repeat Simple_repeat 1 20 0 2258 86 0 51 chr12 85466686 85467000 -58815489 - AluY SINE Alu -13 298 1 3701 255 72 52 chr12 85467205 85468195 -58814294 - L1P LINE L1 -1535 4611 3642 647 215 8 0 chr12 85468195 85468316 -58814173 + FLAM_A SINE Alu 1 122 -11 3701 255 72 52 chr12 85468316 85468563 -58813926 - L1P LINE L1 -2504 3642 3401 508 117 0 0 chr12 85468563 85468640 -58813849 - L1MA1 LINE L1 0 6302 6226 3701 255 72 52 chr12 85468640 85468966 -58813523 - L1P LINE L1 -2745 3401 3016 1362 208 45 0 chr12 85468966 85469230 -58813259 - MSTB1 LTR MaLR 0 432 157 7678 250 26 34 chr12 85469313 85470375 -58812114 + L1PA12 LINE L1 5 1074 -6507 2195 102 14 10 chr12 85470375 85470670 -58811819 - AluSg SINE Alu -14 296 1 7678 250 26 34 chr12 85470670 85471729 -58810760 + L1PA12 LINE L1 1074 1537 -6044 180 0 0 0 chr12 85471729 85471749 -58810740 + (CACAG)n Simple_repeat Simple_repeat 2 21 0 7678 250 26 34 chr12 85471749 85472861 -58809628 + L1PA12 LINE L1 1537 2656 -4925 * 12874 76 6 2 chr12 85472860 85474588 -58807901 - L1P LINE L1 -1311 4835 3100 2144 90 75 0 chr12 85474582 85474904 -58807585 + L1P LINE L1 2754 3099 -3047 * 355 314 44 19 chr12 85475122 85475281 -58807208 + MLT1J LTR MaLR 224 386 -125 2129 133 7 0 chr12 85476240 85476542 -58805947 + AluSx SINE Alu 1 304 -8 893 105 8 0 chr12 85477049 85477182 -58805307 - HERVH LTR ERV1 -3092 4621 4488 3387 119 0 4 chr12 85477184 85477680 -58804809 - HERVH LTR ERV1 -3720 3993 3500 832 176 20 0 chr12 85477679 85477827 -58804662 - HERVH LTR ERV1 -4423 3290 3140 * 20863 90 18 11 chr12 85477821 85480787 -58801702 - HERVH LTR ERV1 -4726 2987 1 3537 58 0 7 chr12 85480789 85481240 -58801249 - LTR7 LTR ERV1 -2 448 1 1865 142 29 26 chr12 85481891 85482200 -58800289 - AluSx SINE Alu -1 311 2 1624 86 0 31 chr12 85482597 85482734 -58799755 + HERVL LTR ERVL 2126 2255 -3399 2088 133 0 23 chr12 85482734 85483042 -58799447 + AluSx SINE Alu 1 301 -11 1624 86 0 31 chr12 85483042 85483126 -58799363 + HERVL LTR ERVL 2255 2340 -3314 2510 90 35 0 chr12 85483128 85483471 -58799018 + L1PA7 LINE L1 2 356 -6105 592 111 0 0 chr12 85483477 85483567 -58798922 - Alu SINE Alu 0 311 222 7169 75 8 6 chr12 85483573 85486892 -58795597 + L1PA7 LINE L1 2928 6469 0 21578 73 18 3 chr12 85486895 85489613 -58792876 + HERVL LTR ERVL 2324 5084 -570 482 176 0 0 chr12 85489613 85489698 -58792791 + FLAM SINE Alu 49 133 -10 2457 55 3 43 chr12 85489760 85489914 -58792575 + HERVL LTR ERVL 5081 5217 -437 216 0 0 0 chr12 85489914 85489938 -58792551 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2457 55 3 43 chr12 85489938 85490110 -58792379 + HERVL LTR ERVL 5217 5394 -260 394 226 60 83 chr12 85490661 85490829 -58791660 - MLT1J1 LTR MaLR -20 426 263 237 260 0 0 chr12 85490870 85490920 -58791569 + MER115 DNA AcHobo 1 50 -643 426 251 58 52 chr12 85491209 85491545 -58790944 - L1MEc LINE L1 -4757 1476 1141 2325 79 14 0 chr12 85491547 85491839 -58790650 - AluSc SINE Alu -13 296 1 2364 111 0 0 chr12 85491857 85492164 -58790325 - AluSx SINE Alu -5 307 1 489 289 121 20 chr12 85492169 85492418 -58790071 - L1MEc LINE L1 -5761 635 362 2026 236 55 13 chr12 85492456 85492496 -58789993 - L1M4 LINE L1 -4620 1955 1918 2257 82 3 10 chr12 85492496 85492790 -58789699 - AluY SINE Alu -15 296 5 2026 236 55 13 chr12 85492790 85493355 -58789134 - L1M4 LINE L1 -4657 1918 1165 551 354 74 31 chr12 85493671 85494157 -58788332 - L1M4 LINE L1 -5764 811 305 195 129 0 0 chr12 85494165 85494196 -58788293 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 1032 262 39 12 chr12 85494202 85494534 -58787955 - L1MEc LINE L1 -6013 383 43 2151 109 31 0 chr12 85494670 85494963 -58787526 + AluSp SINE Alu 1 302 -11 268 176 15 29 chr12 85495028 85495096 -58787393 + L1M LINE L1 5331 5397 -2411 * 1626 206 63 125 chr12 85495095 85495189 -58787300 + HAL1 LINE L1 873 971 -1536 2262 105 0 3 chr12 85495189 85495483 -58787006 - AluSx SINE Alu -19 293 1 1626 206 63 125 chr12 85495483 85496405 -58786084 + HAL1 LINE L1 971 1826 -681 224 30 30 0 chr12 85497282 85497315 -58785174 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2160 92 0 11 chr12 85497315 85497597 -58784892 - AluSx SINE Alu -33 279 1 201 217 22 0 chr12 85497626 85497672 -58784817 + (TA)n Simple_repeat Simple_repeat 1 47 0 238 347 47 47 chr12 85497901 85498114 -58784375 - MIR SINE MIR -46 216 4 567 274 42 12 chr12 85498141 85498309 -58784180 + MIR SINE MIR 88 260 -2 310 208 42 75 chr12 85498765 85498885 -58783604 + L1MC5 LINE L1 7606 7721 -240 30 59 0 0 chr12 85499028 85499079 -58783410 + AT_rich Low_complexity Low_complexity 1 51 0 2169 99 28 0 chr12 85499082 85499366 -58783123 + AluSx SINE Alu 1 292 -20 1160 198 172 45 chr12 85500146 85500611 -58781878 + SATR1 Satellite Satellite 1 523 -2 1163 190 263 5 chr12 85500653 85501732 -58780757 + SATR1 Satellite Satellite 1 1357 -1 1102 205 220 39 chr12 85501761 85502644 -58779845 + SATR1 Satellite Satellite 1 1042 -146 2631 171 0 0 chr12 85502768 85503219 -58779270 + HERVH LTR ERV1 4699 5149 -2564 1241 120 25 0 chr12 85503248 85503448 -58779041 + HERVH LTR ERV1 5615 5819 -1894 1476 162 56 0 chr12 85503450 85503752 -58778737 + HERVH LTR ERV1 7326 7644 -69 2903 183 49 31 chr12 85503891 85504344 -58778145 + L1MA4A LINE L1 2204 2647 -4201 2127 118 0 3 chr12 85504344 85504641 -58777848 + AluSg SINE Alu 1 296 -14 270 0 0 0 chr12 85504650 85504680 -58777809 + (CA)n Simple_repeat Simple_repeat 2 31 0 2903 183 49 31 chr12 85504680 85504948 -58777541 + L1MA4A LINE L1 2654 2945 -3903 3588 104 174 105 chr12 85504955 85506276 -58776213 + pTR5 LTR ERV1 744 2438 0 7463 202 59 44 chr12 85506286 85506763 -58775726 + L1MA4A LINE L1 2955 3423 -3582 288 0 0 0 chr12 85506763 85506795 -58775694 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1946 129 3 44 chr12 85506797 85506945 -58775544 - AluSq SINE Alu -30 283 131 384 40 0 0 chr12 85506945 85506995 -58775494 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 2493 67 3 0 chr12 85507004 85507303 -58775186 - AluY SINE Alu -11 300 1 1946 129 3 44 chr12 85507303 85507439 -58775050 - AluSq SINE Alu -190 123 1 7463 202 59 44 chr12 85507439 85509056 -58773433 + L1MA4A LINE L1 3423 5014 -1991 352 105 0 35 chr12 85509056 85509113 -58773376 + Alu SINE Alu 1 55 -248 1130 95 0 0 chr12 85509115 85509262 -58773227 + AluSp/q SINE Alu 159 305 -8 7463 202 59 44 chr12 85509262 85509278 -58773211 + L1MA4A LINE L1 5014 5028 -1977 860 153 0 8 chr12 85509278 85509409 -58773080 + FRAM SINE Alu 23 152 -24 7463 202 59 44 chr12 85509409 85510015 -58772474 + L1MA4A LINE L1 5028 5623 -1382 1476 142 142 35 chr12 85510015 85510354 -58772135 - THE1C LTR MaLR 0 375 1 7463 202 59 44 chr12 85510354 85511394 -58771095 + L1MA4A LINE L1 5623 6824 -181 422 215 0 0 chr12 85511397 85511490 -58770999 + L1MA4A LINE L1 6890 6982 -23 354 221 139 0 chr12 85511786 85511872 -58770617 + L2 LINE L2 3212 3309 -4 1061 210 163 0 chr12 85512453 85512748 -58769741 + MER2 DNA MER2_type 1 343 -1 2032 115 7 0 chr12 85512866 85513145 -58769344 + AluSx SINE Alu 23 303 -9 2032 113 18 0 chr12 85513206 85513488 -58769001 + AluSx SINE Alu 1 287 -25 677 215 124 128 chr12 85513590 85514393 -58768096 + L1MC5 LINE L1 6765 7564 -397 789 238 32 39 chr12 85514459 85514741 -58767748 + LTR16B LTR ERVL 1 280 -184 * 1790 168 88 10 chr12 85514727 85515114 -58767375 + MSTB1 LTR MaLR 16 432 0 253 244 84 23 chr12 85515128 85515259 -58767230 + LTR16B LTR ERVL 276 414 -50 274 279 84 22 chr12 85515290 85515469 -58767020 + L1MC5 LINE L1 7636 7825 -136 1644 166 29 14 chr12 85515530 85515880 -58766609 + L1MC3 LINE L1 7418 7772 -13 21 0 0 0 chr12 85515893 85515914 -58766575 + AT_rich Low_complexity Low_complexity 1 21 0 195 69 0 0 chr12 85516368 85516397 -58766092 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 798 232 44 0 chr12 85516472 85516653 -58765836 - MER5A DNA MER1_type 0 189 1 1137 160 17 0 chr12 85516934 85517115 -58765374 - AluJb SINE Alu -19 293 110 2374 89 3 7 chr12 85521412 85521716 -58760773 - AluSp SINE Alu -10 303 1 229 321 151 8 chr12 85522258 85522397 -58760092 + MER5B DNA MER1_type 27 178 0 540 81 14 0 chr12 85524782 85524856 -58757633 + AluSg/x SINE Alu 190 264 -45 1344 169 3 0 chr12 85525006 85525290 -58757199 + L1M2 LINE L1 1833 2117 -4732 1970 132 59 0 chr12 85525294 85525583 -58756906 + AluSp SINE Alu 1 306 -7 2208 95 0 13 chr12 85525587 85525903 -58756586 + AluSx SINE Alu 1 312 0 860 273 30 4 chr12 85525988 85526219 -58756270 - MIR SINE MIR -1 261 25 2234 71 0 0 chr12 85526230 85526553 -58755936 - AluY SINE Alu 0 323 1 288 77 0 0 chr12 85527250 85527289 -58755200 + (TG)n Simple_repeat Simple_repeat 1 39 0 2014 114 11 0 chr12 85527294 85527566 -58754923 - AluSq SINE Alu -38 275 1 2188 125 0 22 chr12 85528114 85528434 -58754055 + AluSq SINE Alu 1 313 0 1247 109 11 6 chr12 85529112 85529286 -58753203 - AluSp SINE Alu -132 181 7 298 299 159 13 chr12 85529314 85529471 -58753018 - L2 LINE L2 -14 3258 3079 2028 169 0 0 chr12 85529607 85529903 -58752586 + AluJb SINE Alu 1 296 -16 2456 80 0 0 chr12 85530000 85530300 -58752189 + AluSq SINE Alu 1 300 -13 303 200 31 0 chr12 85531407 85531472 -58751017 + FRAM/FAM SINE Alu 21 87 -88 2501 74 0 0 chr12 85531508 85531805 -58750684 - AluY SINE Alu -14 297 1 2352 84 3 0 chr12 85531948 85532247 -58750242 - AluSp SINE Alu -13 300 1 1632 135 106 31 chr12 85533028 85533377 -58749112 - THE1C LTR MaLR 0 375 1 308 323 146 0 chr12 85533591 85533721 -58748768 + MER5A DNA MER1_type 41 189 0 283 283 214 35 chr12 85533893 85534038 -58748451 + MER5B DNA MER1_type 5 175 -3 199 279 29 29 chr12 85534073 85534141 -58748348 - MER5A DNA MER1_type -77 112 45 221 339 222 17 chr12 85534274 85534454 -58748035 - L2 LINE L2 -36 3236 3020 413 335 128 44 chr12 85534681 85535140 -58747349 - L2 LINE L2 -580 2734 2237 886 262 173 22 chr12 85535155 85535571 -58746918 + L1MEc LINE L1 36 514 -5882 817 203 101 67 chr12 85535580 85535896 -58746593 + L1ME1 LINE L1 5840 6166 0 265 41 82 0 chr12 85535980 85536029 -58746460 + AluY SINE Alu 1 53 -250 4246 240 106 41 chr12 85536156 85536248 -58746241 - L1MEc LINE L1 -1367 4848 4763 2191 113 7 3 chr12 85536248 85536548 -58745941 - AluSx SINE Alu -11 301 1 4246 240 106 41 chr12 85536548 85537797 -58744692 - L1MEc LINE L1 -1452 4763 3598 1895 143 21 11 chr12 85537797 85538084 -58744405 + AluSx SINE Alu 1 290 -22 4246 240 106 41 chr12 85538084 85538705 -58743784 - L1MEc LINE L1 -2617 3598 3019 207 0 0 0 chr12 85538705 85538728 -58743761 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4246 240 106 41 chr12 85538728 85539899 -58742590 - L1MEc LINE L1 -3196 3019 1553 1713 129 8 19 chr12 85539895 85540260 -58742229 - L1P LINE L1 -2964 3182 2822 * 234 81 0 0 chr12 85541076 85541113 -58741376 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 2254 84 0 0 chr12 85541381 85541680 -58740809 - L1PA5 LINE L1 -1 6153 5855 441 251 81 47 chr12 85541775 85541986 -58740503 + LTR40a LTR ERVL 302 519 0 21 36 0 0 chr12 85542376 85542404 -58740085 + AT_rich Low_complexity Low_complexity 1 28 0 1882 113 4 0 chr12 85542407 85542663 -58739826 + AluSx SINE Alu 1 257 -55 215 306 8 60 chr12 85543381 85543515 -58738974 + L2 LINE L2 1968 2094 -1220 1153 36 0 0 chr12 85543563 85543700 -58738789 - AluY SINE Alu -17 294 158 2564 12 12 3 chr12 85543814 85544145 -58738344 - L1P LINE L1 -3432 2714 2381 4613 22 1 1 chr12 85544146 85544902 -58737587 + L1P2 LINE L1 5045 5800 -355 25 0 0 0 chr12 85545028 85545053 -58737436 + AT_rich Low_complexity Low_complexity 1 25 0 2313 103 0 16 chr12 85545458 85545769 -58736720 + AluSg SINE Alu 5 310 0 279 0 0 0 chr12 85545774 85545805 -58736684 + (TA)n Simple_repeat Simple_repeat 1 31 0 270 0 0 0 chr12 85545849 85545879 -58736610 + (CA)n Simple_repeat Simple_repeat 2 31 0 1247 93 12 6 chr12 85547132 85547304 -58735185 + AluSg/x SINE Alu 128 300 -12 304 146 55 0 chr12 85547409 85547464 -58735025 - MER5A DNA MER1_type 0 189 132 2307 90 0 3 chr12 85548576 85548876 -58733613 - AluSx SINE Alu -13 299 1 288 77 0 0 chr12 85549575 85549614 -58732875 + (TG)n Simple_repeat Simple_repeat 1 39 0 2006 114 11 0 chr12 85549619 85549891 -58732598 - AluSq SINE Alu -38 275 1 2150 125 0 22 chr12 85550439 85550759 -58731730 + AluSq SINE Alu 1 313 0 358 346 54 27 chr12 85551714 85551899 -58730590 - L2 LINE L2 0 3313 3124 1942 134 3 23 chr12 85551931 85552237 -58730252 - AluJb SINE Alu -12 300 1 620 206 112 0 chr12 85552244 85552414 -58730075 - MER5C DNA MER1_type -8 316 128 1853 238 117 4 chr12 85552670 85553133 -58729356 - MLT1F LTR MaLR -27 515 1 1867 70 0 0 chr12 85553679 85553908 -58728581 - AluSg SINE Alu -81 229 1 29 47 0 0 chr12 85555247 85555290 -58727199 + AT_rich Low_complexity Low_complexity 1 43 0 1355 159 40 62 chr12 85555364 85555640 -58726849 - AluJo SINE Alu -30 282 13 406 162 232 0 chr12 85555820 85555919 -58726570 - MER5C DNA MER1_type -201 123 2 219 356 89 22 chr12 85555945 85556080 -58726409 - L2 LINE L2 -317 2955 2812 1556 155 50 10 chr12 85556081 85556378 -58726111 - AluJo SINE Alu -3 309 1 641 162 184 6 chr12 85556558 85556737 -58725752 - Charlie7 DNA MER1_type -211 2401 2191 525 186 162 67 chr12 85557003 85557213 -58725276 - Charlie7 DNA MER1_type -2382 230 1 508 321 196 21 chr12 85557279 85557606 -58724883 - L2 LINE L2 -640 2674 2291 528 150 30 50 chr12 85557609 85557709 -58724780 - AluJb SINE Alu -144 168 71 210 297 47 99 chr12 85557720 85557833 -58724656 - L2 LINE L2 -1080 2234 2138 1648 157 26 45 chr12 85557833 85558145 -58724344 + AluJo SINE Alu 1 306 -6 210 297 47 99 chr12 85558145 85558263 -58724226 - L2 LINE L2 -1176 2138 2015 2389 75 10 3 chr12 85558541 85558849 -58723640 - AluSq SINE Alu -3 310 1 267 202 245 11 chr12 85559685 85559779 -58722710 - L1ME4a LINE L1 -15 6106 5991 339 265 102 54 chr12 85559943 85560109 -58722380 - L1ME4a LINE L1 -213 5908 5735 1118 192 139 99 chr12 85560461 85560665 -58721824 + L1MB7 LINE L1 5674 5868 -316 1910 153 0 0 chr12 85560665 85560972 -58721517 + AluSx SINE Alu 1 307 0 1118 192 139 99 chr12 85560972 85561239 -58721250 + L1MB7 LINE L1 5868 6167 -17 494 269 109 6 chr12 85561647 85561822 -58720667 + MIR SINE MIR 66 258 -4 916 111 0 0 chr12 85562016 85562133 -58720356 + AluSq/x SINE Alu 2 118 -194 274 170 0 0 chr12 85562133 85562180 -58720309 + Alu SINE Alu 253 299 -2 1773 185 3 3 chr12 85562496 85562793 -58719696 - AluJb SINE Alu -15 297 1 354 258 157 28 chr12 85563522 85563739 -58718750 - MIR SINE MIR -17 245 1 2194 113 3 0 chr12 85564260 85564562 -58717927 + AluSx SINE Alu 1 303 -9 1882 127 53 56 chr12 85564798 85564916 -58717573 - L1MA6 LINE L1 -1 6299 6182 1809 158 153 5 chr12 85564916 85565289 -58717200 + MSTA LTR MaLR 1 428 0 1882 127 53 56 chr12 85565289 85565312 -58717177 - L1MA6 LINE L1 -118 6182 6160 2002 157 7 0 chr12 85565312 85565618 -58716871 - AluSx SINE Alu -4 308 1 1882 127 53 56 chr12 85565618 85565868 -58716621 - L1MA6 LINE L1 -140 6160 5908 344 141 0 62 chr12 85566116 85566180 -58716309 + Tigger7 DNA MER2_type 1 60 -279 50 42 0 0 chr12 85566201 85566272 -58716217 + AT_rich Low_complexity Low_complexity 1 71 0 2555 181 18 4 chr12 85566272 85566724 -58715765 + Tigger7 DNA MER2_type 69 526 -1961 552 187 0 0 chr12 85566718 85566809 -58715680 + Tigger7 DNA MER2_type 2396 2486 -1 * 348 363 70 0 chr12 85568804 85569005 -58713484 + L1M4 LINE L1 4015 4229 -1917 1026 237 107 19 chr12 85570279 85570654 -58711835 - L1MC4a LINE L1 -1977 5831 5424 660 249 96 12 chr12 85570776 85571025 -58711464 + L1M4c LINE L1 1219 1488 -4896 29 0 0 0 chr12 85571025 85571054 -58711435 + AT_rich Low_complexity Low_complexity 1 29 0 1865 89 4 0 chr12 85571064 85571310 -58711179 + AluY SINE Alu 1 247 -64 180 309 0 74 chr12 85572332 85572413 -58710076 - L2 LINE L2 -4 3268 3194 716 308 83 26 chr12 85572499 85572921 -58709568 - MER20B DNA MER1_type -307 476 31 202 389 110 28 chr12 85572992 85573347 -58709142 - L2 LINE L2 -2844 470 87 22 0 0 0 chr12 85573347 85573369 -58709120 + AT_rich Low_complexity Low_complexity 1 22 0 341 226 94 9 chr12 85573553 85573659 -58708830 + MER112 DNA MER1_type 134 248 -12 328 301 153 6 chr12 85573661 85573837 -58708652 + MIR SINE MIR 22 223 -39 1187 209 50 46 chr12 85574170 85574625 -58707864 - L1MC5 LINE L1 -53 7908 7452 358 194 28 65 chr12 85574627 85574735 -58707754 + MER58C DNA MER1_type 26 129 -86 1021 161 111 1 chr12 85574752 85575083 -58707406 - L1ME LINE L1 -656 5510 5149 1925 131 33 0 chr12 85575084 85575394 -58707095 - AluSx SINE Alu 0 319 1 547 198 0 108 chr12 85575397 85575564 -58706925 - L1ME LINE L1 -1143 5003 4855 847 215 26 68 chr12 85575573 85575905 -58706584 + AluJb SINE Alu 1 319 0 1486 94 5 0 chr12 85576005 85576206 -58706283 + AluSq SINE Alu 98 299 -14 2230 120 12 24 chr12 85576378 85576719 -58705770 - MER1B DNA MER1_type -2 337 1 1846 147 0 75 chr12 85576903 85577222 -58705267 + AluSq SINE Alu 1 295 -18 1781 200 183 92 chr12 85577506 85578226 -58704263 + LTR1B LTR ERV1 1 983 -37 717 139 62 31 chr12 85578784 85578913 -58703576 + FLAM_C SINE Alu 1 133 0 372 131 52 7 chr12 85579283 85579436 -58703053 + (TA)n Simple_repeat Simple_repeat 1 160 0 21 0 0 0 chr12 85579483 85579504 -58702985 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr12 85580500 85580526 -58701963 + AT_rich Low_complexity Low_complexity 1 26 0 625 326 82 9 chr12 85580632 85580865 -58701624 + MIR SINE MIR 10 259 -3 1392 179 101 56 chr12 85581055 85581413 -58701076 + MLT1A2 LTR MaLR 1 374 0 781 47 9 0 chr12 85582070 85582177 -58700312 + (TA)n Simple_repeat Simple_repeat 1 108 0 180 0 0 0 chr12 85582176 85582196 -58700293 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 1488 195 35 58 chr12 85582360 85582754 -58699735 - MLT1B LTR MaLR -5 385 1 186 242 226 0 chr12 85583106 85583168 -58699321 + L2 LINE L2 3221 3296 -17 206 231 0 0 chr12 85583170 85583209 -58699280 + GA-rich Low_complexity Low_complexity 2 40 0 1884 211 68 40 chr12 85584806 85585010 -58697479 + MER119 DNA MER1_type 42 239 -344 288 0 0 0 chr12 85585010 85585042 -58697447 + (CA)n Simple_repeat Simple_repeat 1 32 0 1884 211 68 40 chr12 85585042 85585364 -58697125 + MER119 DNA MER1_type 239 583 0 192 327 0 0 chr12 85585509 85585564 -58696925 + L2 LINE L2 352 406 -2908 262 303 92 18 chr12 85585849 85585958 -58696531 + MIR SINE MIR 16 132 -76 21 36 0 0 chr12 85585961 85585989 -58696500 + AT_rich Low_complexity Low_complexity 1 28 0 871 157 27 0 chr12 85585991 85586138 -58696351 - MER46A DNA MER2_type 0 236 86 330 297 85 47 chr12 85586256 85586468 -58696021 + HAL1 LINE L1 387 606 -1901 2317 107 3 0 chr12 85586869 85587177 -58695312 + AluSc SINE Alu 1 309 0 1895 126 44 14 chr12 85587813 85588107 -58694382 - MER1B DNA MER1_type 0 339 37 1323 171 14 47 chr12 85588510 85588785 -58693704 + AluJo SINE Alu 37 302 -10 1593 180 7 14 chr12 85589478 85589773 -58692716 + AluJo SINE Alu 1 293 -19 1787 138 84 31 chr12 85589790 85590110 -58692379 - MER1B DNA MER1_type 0 337 1 601 167 173 40 chr12 85590510 85590660 -58691829 - MER58B DNA MER1_type 0 341 172 198 0 0 0 chr12 85590688 85590710 -58691779 + (A)n Simple_repeat Simple_repeat 1 22 0 305 246 0 0 chr12 85590716 85590773 -58691716 - MER58B DNA MER1_type -284 57 1 417 221 79 15 chr12 85591521 85591662 -58690827 + AluJ/FLAM SINE Alu 2 95 -207 2149 150 53 14 chr12 85591819 85592253 -58690236 + L1MB3 LINE L1 5733 6183 0 21 0 0 0 chr12 85592955 85592976 -58689513 + AT_rich Low_complexity Low_complexity 1 21 0 726 138 0 0 chr12 85592993 85593144 -58689345 - AluSp/q SINE Alu 0 324 174 524 212 59 0 chr12 85593421 85593539 -58688950 + MIR SINE MIR 56 180 -82 766 158 179 5 chr12 85593855 85594039 -58688450 - MER20 DNA MER1_type -3 216 1 2229 232 122 61 chr12 85594277 85594540 -58687949 - HAL1 LINE L1 -10 2497 2252 2456 51 0 63 chr12 85594540 85594872 -58687617 - AluY SINE Alu 0 311 1 2229 232 122 61 chr12 85594872 85595217 -58687272 - HAL1 LINE L1 -255 2252 1930 2054 117 3 7 chr12 85595217 85595517 -58686972 - AluSx SINE Alu -13 299 1 2229 232 122 61 chr12 85595517 85596030 -58686459 - HAL1 LINE L1 -577 1930 1269 2139 123 20 0 chr12 85596030 85596330 -58686159 - AluSg SINE Alu -4 306 1 2229 232 122 61 chr12 85596330 85596603 -58685886 - HAL1 LINE L1 -1238 1269 1014 1400 275 122 40 chr12 85596632 85597483 -58685006 - HAL1 LINE L1 -1586 921 1 529 228 178 5 chr12 85597858 85598060 -58684429 - MER69 DNA AcHobo -3 2523 2287 850 234 26 62 chr12 85598101 85598408 -58684081 - MER69 DNA AcHobo -1699 827 532 2299 301 176 23 chr12 85598408 85599359 -58683130 + L2 LINE L2 548 1352 -1962 1417 233 43 51 chr12 85599359 85599866 -58682623 - MLT1D LTR MaLR 0 505 3 2299 301 176 23 chr12 85599866 85600354 -58682135 + L2 LINE L2 1352 2208 -1106 1641 186 63 25 chr12 85600391 85600927 -58681562 - MLT2A2 LTR ERVL 0 554 3 437 254 70 55 chr12 85600929 85601130 -58681359 + L2 LINE L2 2302 2505 -809 779 301 118 27 chr12 85601138 85601726 -58680763 + L2 LINE L2 2655 3289 -24 230 230 110 55 chr12 85602090 85602181 -58680308 + MIR SINE MIR 66 162 -46 21 0 0 0 chr12 85602201 85602222 -58680267 + AT_rich Low_complexity Low_complexity 1 21 0 1299 184 57 0 chr12 85602225 85602372 -58680117 - AluJo SINE Alu -31 281 115 330 26 0 0 chr12 85602372 85602411 -58680078 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1299 184 57 0 chr12 85602411 85602491 -58679998 - AluJo SINE Alu -197 115 41 2174 130 13 0 chr12 85602721 85603029 -58679460 - AluSx SINE Alu 0 312 1 1417 160 69 56 chr12 85603056 85603344 -58679145 + AluJo SINE Alu 1 292 -20 364 298 51 47 chr12 85603346 85603488 -58679001 + L1ME LINE L1 5179 5324 -822 1584 163 14 35 chr12 85603488 85603776 -58678713 + AluJo SINE Alu 17 298 -14 364 298 51 47 chr12 85603776 85603848 -58678641 + L1ME LINE L1 5324 5394 -752 386 281 115 15 chr12 85603850 85604110 -58678379 + L1ME LINE L1 5414 5702 -462 1932 151 7 3 chr12 85604113 85604411 -58678078 + AluJb SINE Alu 1 299 -13 708 212 8 0 chr12 85605629 85605761 -58676728 + FLAM_A SINE Alu 1 133 0 210 294 118 0 chr12 85605865 85605967 -58676522 - MIR SINE MIR -70 192 79 195 359 0 0 chr12 85606927 85606991 -58675498 + MER5A DNA MER1_type 37 100 -89 1726 147 0 11 chr12 85607048 85607320 -58675169 + AluJb SINE Alu 35 303 -9 21 36 0 0 chr12 85607873 85607901 -58674588 + AT_rich Low_complexity Low_complexity 1 28 0 652 217 9 0 chr12 85608213 85608328 -58674161 - FLAM_A SINE Alu -17 116 1 643 201 35 12 chr12 85609792 85609961 -58672528 + L1MC5 LINE L1 7029 7201 -760 1711 212 59 19 chr12 85609962 85610439 -58672050 + Charlie1b DNA MER1_type 18 513 -10 569 69 11 11 chr12 85610440 85610527 -58671962 + MER4A LTR ERV1 1 87 -577 * 1390 99 43 51 chr12 85610516 85610769 -58671720 + MER4B LTR ERV1 360 610 0 1127 227 119 50 chr12 85610772 85611434 -58671055 + L1MC5 LINE L1 7198 7905 -56 2158 91 4 0 chr12 85611434 85611710 -58670779 - AluSp SINE Alu -6 307 31 1982 111 0 131 chr12 85611996 85612384 -58670105 - MER1B DNA MER1_type 0 337 1 1465 170 113 18 chr12 85613255 85613538 -58668951 - AluSg SINE Alu 0 310 1 184 306 0 0 chr12 85614462 85614498 -58667991 - L2 LINE L2 -35 3237 3202 712 197 8 0 chr12 85614545 85614677 -58667812 + FLAM_A SINE Alu 1 133 0 605 201 65 0 chr12 85614987 85615141 -58667348 - L1M4 LINE L1 -2121 4025 3862 306 173 111 25 chr12 85615205 85615286 -58667203 + MIR SINE MIR 172 259 -3 799 168 16 0 chr12 85615326 85615451 -58667038 + FLAM_A SINE Alu 1 127 -6 463 277 312 16 chr12 85615514 85615947 -58666542 + L2 LINE L2 2406 2966 -348 223 248 67 114 chr12 85615978 85616188 -58666301 + L2 LINE L2 2942 3141 -172 415 197 120 49 chr12 85616294 85616578 -58665911 - L1MC5 LINE L1 -53 7908 7605 2484 58 0 0 chr12 85616614 85616906 -58665583 - AluY SINE Alu -19 292 1 375 288 151 0 chr12 85617079 85617218 -58665271 + LTR50 LTR ERVL 362 521 -274 5598 117 14 21 chr12 85617322 85618633 -58663856 + L1PA15 LINE L1 4371 5673 -492 1865 145 10 19 chr12 85618633 85618944 -58663545 + AluJb SINE Alu 1 308 -4 5598 117 14 21 chr12 85618944 85619434 -58663055 + L1PA15 LINE L1 5673 6165 0 560 231 14 48 chr12 85619630 85619777 -58662712 + MIR SINE MIR 103 244 -18 242 358 54 14 chr12 85620294 85620442 -58662047 + L2 LINE L2 2899 3052 -220 629 248 101 23 chr12 85622011 85622229 -58660260 + MIR SINE MIR 28 262 0 297 306 21 49 chr12 85622237 85622381 -58660108 + L2 LINE L2 2919 3058 -214 848 199 0 0 chr12 85622453 85622599 -58659890 - FRAM SINE Alu -30 146 1 206 176 0 0 chr12 85623313 85623347 -58659142 + MIR3 SINE MIR 151 184 -24 1529 185 38 14 chr12 85624372 85624664 -58657825 + AluJb SINE Alu 1 299 -13 354 123 0 0 chr12 85624664 85624721 -58657768 + (GGGGA)n Simple_repeat Simple_repeat 2 58 0 752 171 62 7 chr12 85624850 85624996 -58657493 + FRAM SINE Alu 1 153 -23 738 219 6 24 chr12 85625684 85625853 -58656636 - AluJb SINE Alu -10 302 137 242 333 51 8 chr12 85626815 85626932 -58655557 - MIR SINE MIR -39 223 102 324 319 136 24 chr12 85626933 85627102 -58655387 - MER5A DNA MER1_type -1 188 1 406 126 0 81 chr12 85627267 85627354 -58655135 + MADE1 DNA Mariner 1 80 0 516 61 37 12 chr12 85627615 85627697 -58654792 + L1MB7 LINE L1 6082 6165 -19 2096 141 0 22 chr12 85627866 85628185 -58654304 + AluSx SINE Alu 1 312 0 562 230 230 17 chr12 85628437 85628611 -58653878 + MIR SINE MIR 41 251 -11 346 252 137 0 chr12 85629457 85629588 -58652901 + MIR SINE MIR 64 212 -50 447 200 45 155 chr12 85629978 85630178 -58652311 + MER5B DNA MER1_type 1 178 0 180 0 0 0 chr12 85632005 85632025 -58650464 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr12 85633554 85633575 -58648914 + GC_rich Low_complexity Low_complexity 1 21 0 278 49 0 24 chr12 85634559 85634600 -58647889 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 197 269 60 15 chr12 85636090 85636157 -58646332 + MIR SINE MIR 76 145 -63 997 63 0 8 chr12 85636168 85636294 -58646195 - AluSc SINE Alu -16 293 169 526 212 59 0 chr12 85636568 85636686 -58645803 + MIR SINE MIR 56 180 -82 772 158 179 5 chr12 85637002 85637186 -58645303 - MER20 DNA MER1_type -3 216 1 2480 233 122 61 chr12 85637424 85637687 -58644802 - HAL1 LINE L1 -10 2497 2252 2464 51 0 63 chr12 85637687 85638019 -58644470 - AluY SINE Alu 0 311 1 2480 233 122 61 chr12 85638019 85638364 -58644125 - HAL1 LINE L1 -255 2252 1930 2054 117 3 7 chr12 85638364 85638664 -58643825 - AluSx SINE Alu -13 299 1 2480 233 122 61 chr12 85638664 85639177 -58643312 - HAL1 LINE L1 -577 1930 1270 2068 127 23 0 chr12 85639177 85639476 -58643013 - AluSg SINE Alu -4 306 1 2480 233 122 61 chr12 85639476 85639750 -58642739 - HAL1 LINE L1 -1237 1270 1014 1400 275 122 40 chr12 85639779 85640630 -58641859 - HAL1 LINE L1 -1586 921 1 529 228 178 5 chr12 85641005 85641207 -58641282 - MER69 DNA AcHobo -3 2523 2287 850 234 26 62 chr12 85641248 85641555 -58640934 - MER69 DNA AcHobo -1699 827 532 2299 301 176 23 chr12 85641555 85642506 -58639983 + L2 LINE L2 548 1352 -1962 1445 231 43 51 chr12 85642506 85643013 -58639476 - MLT1D LTR MaLR 0 505 3 2299 301 176 23 chr12 85643013 85643501 -58638988 + L2 LINE L2 1352 2208 -1106 1641 186 63 25 chr12 85643538 85644074 -58638415 - MLT2A2 LTR ERVL 0 554 3 437 254 70 55 chr12 85644076 85644277 -58638212 + L2 LINE L2 2302 2505 -809 779 301 118 27 chr12 85644285 85644873 -58637616 + L2 LINE L2 2655 3289 -24 230 230 110 55 chr12 85645237 85645328 -58637161 + MIR SINE MIR 66 162 -46 21 0 0 0 chr12 85645348 85645369 -58637120 + AT_rich Low_complexity Low_complexity 1 21 0 1299 184 57 0 chr12 85645372 85645519 -58636970 - AluJo SINE Alu -31 281 115 330 26 0 0 chr12 85645519 85645558 -58636931 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1299 184 57 0 chr12 85645558 85645638 -58636851 - AluJo SINE Alu -197 115 41 2174 130 13 0 chr12 85645868 85646176 -58636313 - AluSx SINE Alu 0 312 1 1417 160 69 56 chr12 85646203 85646491 -58635998 + AluJo SINE Alu 1 292 -20 386 288 86 29 chr12 85646493 85646635 -58635854 + L1ME LINE L1 5179 5312 -852 1584 163 14 35 chr12 85646635 85646923 -58635566 + AluJo SINE Alu 17 298 -14 386 288 86 29 chr12 85646923 85647257 -58635232 + L1ME LINE L1 5312 5702 -462 1932 151 7 3 chr12 85647260 85647558 -58634931 + AluJb SINE Alu 1 299 -13 2236 90 0 0 chr12 85648029 85648318 -58634171 + AluSx SINE Alu 1 289 -23 26 0 0 0 chr12 85648318 85648344 -58634145 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr12 85648480 85648502 -58633987 + (A)n Simple_repeat Simple_repeat 1 22 0 2347 106 6 0 chr12 85648838 85649149 -58633340 - AluSq SINE Alu 0 313 1 553 350 37 5 chr12 85650187 85650237 -58632252 - MIR SINE MIR -13 249 202 2513 165 19 2 chr12 85650237 85650655 -58631834 - MSTB LTR MaLR 0 426 2 553 350 37 5 chr12 85650655 85650821 -58631668 - MIR SINE MIR -60 202 26 205 216 0 78 chr12 85651047 85651098 -58631391 + L2 LINE L2 3219 3265 -7 203 282 101 121 chr12 85651966 85652115 -58630374 - L2 LINE L2 -2 3270 3125 238 255 0 0 chr12 85652751 85652798 -58629691 + (TG)n Simple_repeat Simple_repeat 2 48 0 798 190 32 72 chr12 85652906 85653127 -58629362 - L2 LINE L2 0 3313 3102 587 230 58 92 chr12 85653191 85653403 -58629086 - L1ME LINE L1 -346 5816 5607 2034 123 11 0 chr12 85653403 85653687 -58628802 - AluSx SINE Alu -25 287 1 587 230 58 92 chr12 85653687 85653725 -58628764 - L1ME LINE L1 -555 5607 5569 270 0 0 0 chr12 85653786 85653816 -58628673 + (TG)n Simple_repeat Simple_repeat 2 31 0 200 209 0 0 chr12 85653823 85653866 -58628623 + T-rich Low_complexity Low_complexity 3 45 0 235 241 76 0 chr12 85654042 85654121 -58628368 - L1P LINE L1 -1097 5049 4965 837 135 61 14 chr12 85654130 85654278 -58628211 + THE1B LTR MaLR 1 155 -220 4660 133 53 40 chr12 85654280 85655798 -58626691 + pTR5 LTR ERV1 741 2437 -1 914 171 18 51 chr12 85655801 85656018 -58626471 + THE1B LTR MaLR 155 364 0 195 208 188 0 chr12 85656183 85656231 -58626258 - L2 LINE L2 0 3313 3257 298 235 59 0 chr12 85656351 85656453 -58626036 - L1M4 LINE L1 -1487 4659 4552 1888 127 16 47 chr12 85656574 85656762 -58625727 - AluSx SINE Alu 0 312 137 2288 98 0 3 chr12 85656762 85657067 -58625422 - AluSc SINE Alu -5 304 1 1888 127 16 47 chr12 85657067 85657200 -58625289 - AluSx SINE Alu -175 137 1 413 288 79 0 chr12 85657224 85657363 -58625126 - L1M4 LINE L1 -1863 4283 4134 1769 157 10 24 chr12 85657466 85657759 -58624730 + AluJo SINE Alu 1 289 -23 2047 133 3 10 chr12 85658524 85658817 -58623672 + AluSq SINE Alu 1 291 -22 1644 179 3 42 chr12 85659530 85659692 -58622797 - AluJb SINE Alu -16 296 150 2690 29 7 0 chr12 85659692 85660000 -58622489 - AluY SINE Alu -1 310 1 1644 179 3 42 chr12 85660000 85660145 -58622344 - AluJb SINE Alu -162 150 1 334 248 74 89 chr12 85661120 85661184 -58621305 + MER112 DNA MER1_type 18 81 -179 2115 141 0 0 chr12 85661184 85661483 -58621006 - AluSx SINE Alu -13 299 1 334 248 74 89 chr12 85661483 85661620 -58620869 + MER112 DNA MER1_type 81 216 -44 524 224 245 0 chr12 85661648 85661795 -58620694 - MER5A DNA MER1_type 0 189 7 2283 94 0 0 chr12 85661886 85662172 -58620317 + AluSq SINE Alu 1 286 -27 841 277 143 29 chr12 85662328 85662910 -58619579 - L2 LINE L2 -5 3308 2656 1470 78 41 95 chr12 85662910 85663153 -58619336 - MER30 DNA MER1_type 0 230 1 841 277 143 29 chr12 85663153 85663203 -58619286 - L2 LINE L2 -657 2656 2613 470 243 11 60 chr12 85663709 85663894 -58618595 - MER104 DNA Tc2 -3 177 2 2464 79 3 3 chr12 85664240 85664545 -58617944 - AluSq SINE Alu -8 305 1 2028 169 0 0 chr12 85664641 85664937 -58617552 - AluJb SINE Alu -16 296 1 298 299 159 13 chr12 85665073 85665230 -58617259 + L2 LINE L2 3079 3258 -14 2381 82 3 0 chr12 85665258 85665551 -58616938 + AluSp SINE Alu 7 300 -13 303 200 31 0 chr12 85666658 85666723 -58615766 + FRAM/FAM SINE Alu 21 87 -88 2490 74 0 0 chr12 85666759 85667056 -58615433 - AluY SINE Alu -14 297 1 3667 114 29 67 chr12 85667229 85667945 -58614544 - L1MA8 LINE L1 -4 6287 5599 708 285 35 5 chr12 85667948 85668148 -58614341 + MIR SINE MIR 26 231 -31 391 273 65 13 chr12 85668323 85668477 -58614012 + MIR SINE MIR 89 250 -12 2074 159 0 0 chr12 85668849 85669157 -58613332 + AluSx SINE Alu 1 308 -4 303 280 0 32 chr12 85670158 85670251 -58612238 + MIR SINE MIR 101 190 -72 11022 191 57 20 chr12 85670523 85673697 -58608792 + L1MD1 LINE L1 25 3325 -3215 2058 101 3 18 chr12 85673697 85674018 -58608471 - AluSg SINE Alu 0 317 1 11022 191 57 20 chr12 85674018 85674280 -58608209 + L1MD1 LINE L1 3325 3576 -2964 2560 129 9 5 chr12 85674275 85674716 -58607773 - L1MA8 LINE L1 -350 5950 5508 * 1262 176 38 35 chr12 85674716 85675032 -58607457 + L1MA8 LINE L1 5969 6287 -4 3570 239 55 58 chr12 85675034 85675901 -58606588 + L1MD1 LINE L1 3505 4374 -2262 1605 148 11 30 chr12 85675901 85676172 -58606317 + AluJo SINE Alu 1 266 -46 3570 239 55 58 chr12 85676172 85677110 -58605379 + L1MD1 LINE L1 4374 5314 -1322 1920 148 7 10 chr12 85677110 85677408 -58605081 - AluSg SINE Alu -13 297 1 3570 239 55 58 chr12 85677408 85677819 -58604670 + L1MD1 LINE L1 5314 5672 -964 1504 160 0 34 chr12 85677819 85678088 -58604401 + L1PB4 LINE L1 5896 6155 -1 3570 239 55 58 chr12 85678088 85678417 -58604072 + L1MD1 LINE L1 5672 6001 -635 5406 145 39 31 chr12 85678419 85679840 -58602649 + L1MA4 LINE L1 4865 6299 -1 2987 142 11 60 chr12 85679844 85679981 -58602508 + L1MD1 LINE L1 5987 6129 -507 1488 174 0 45 chr12 85679981 85680246 -58602243 + AluJb SINE Alu 39 291 -21 2987 142 11 60 chr12 85680246 85680324 -58602165 + L1MD1 LINE L1 6129 6209 -427 2363 85 3 0 chr12 85680324 85680617 -58601872 + AluSp SINE Alu 1 294 -19 2987 142 11 60 chr12 85680617 85681013 -58601476 + L1MD1 LINE L1 6209 6569 -67 205 205 0 0 chr12 85681019 85681058 -58601431 + T-rich Low_complexity Low_complexity 1 39 0 189 264 33 66 chr12 85681083 85681174 -58601315 + MIR SINE MIR 87 174 -88 513 293 27 7 chr12 85681491 85681641 -58600848 - MIR3 SINE MIR -46 162 10 2264 98 19 10 chr12 85682864 85683171 -58599318 + AluSx SINE Alu 1 310 -2 1820 155 40 10 chr12 85683351 85683654 -58598835 - AluJb SINE Alu 0 312 1 439 219 21 0 chr12 85684078 85684174 -58598315 + MIR SINE MIR 159 256 -6 2384 104 0 0 chr12 85684588 85684896 -58597593 - AluSc SINE Alu -1 308 1 2038 234 89 53 chr12 85685442 85686673 -58595816 - L1MCc LINE L1 -4836 2105 796 1044 317 56 26 chr12 85686700 85687322 -58595167 - L1MCc LINE L1 -5759 664 24 402 288 80 6 chr12 85687375 85687538 -58594951 - L1M4 LINE L1 -1300 4846 4672 331 243 83 55 chr12 85687683 85687864 -58594625 - L1ME4a LINE L1 -1 6120 5935 72 40 0 0 chr12 85687894 85687994 -58594495 + AT_rich Low_complexity Low_complexity 1 100 0 2297 86 3 16 chr12 85688517 85688830 -58593659 + AluSx SINE Alu 1 309 -3 2347 92 0 0 chr12 85688887 85689193 -58593296 + AluY SINE Alu 1 306 -5 7172 48 2 0 chr12 85689251 85690585 -58591904 - L1PA5 LINE L1 -9 6145 4809 2146 132 3 0 chr12 85690585 85690896 -58591593 - AluSq SINE Alu -1 312 1 288 0 0 0 chr12 85691193 85691225 -58591264 + (TG)n Simple_repeat Simple_repeat 1 32 0 404 297 180 17 chr12 85691225 85691525 -58590964 - L1M4 LINE L1 -1176 4970 4622 2517 219 75 15 chr12 85691564 85692355 -58590134 - L1M4 LINE L1 -1800 4346 3509 2239 78 3 42 chr12 85692426 85692734 -58589755 - AluY SINE Alu -13 298 3 1099 247 21 6 chr12 85692737 85693281 -58589208 + MLT2E LTR ERVL 32 620 -8 607 274 261 3 chr12 85693835 85694142 -58588347 + L2 LINE L2 1763 2148 -1166 2393 95 3 0 chr12 85694142 85694447 -58588042 - AluSx SINE Alu -6 306 1 552 283 71 7 chr12 85694490 85694787 -58587702 + L1MEc LINE L1 1665 1980 -4416 8561 185 67 37 chr12 85694821 85694935 -58587554 - Charlie6 DNA MER1_type -988 2512 2403 2202 120 3 7 chr12 85694935 85695236 -58587253 - AluSx SINE Alu -12 300 1 8561 185 67 37 chr12 85695236 85695271 -58587218 - Charlie6 DNA MER1_type -1097 2403 2371 192 40 0 0 chr12 85695271 85695296 -58587193 + (TC)n Simple_repeat Simple_repeat 2 26 0 8561 185 67 37 chr12 85695296 85695764 -58586725 - Charlie6 DNA MER1_type -1129 2371 1918 1705 174 0 38 chr12 85695764 85696080 -58586409 + AluJb SINE Alu 1 304 -8 8561 185 67 37 chr12 85696080 85696276 -58586213 - Charlie6 DNA MER1_type -1582 1918 1729 2226 113 3 0 chr12 85696276 85696569 -58585920 - AluSc SINE Alu -7 302 9 8561 185 67 37 chr12 85696569 85697865 -58584624 - Charlie6 DNA MER1_type -1771 1729 337 300 182 18 0 chr12 85697870 85697925 -58584564 - Charlie6 DNA MER1_type -3444 56 1 506 249 100 25 chr12 85697925 85698145 -58584344 - L1ME LINE L1 -4332 2806 2565 1654 216 39 65 chr12 85698145 85698664 -58583825 + MLT1D LTR MaLR 1 505 0 506 249 100 25 chr12 85698664 85698684 -58583805 - L1ME LINE L1 -4573 2565 2548 818 282 100 27 chr12 85698768 85699516 -58582973 - L1ME LINE L1 -4819 2319 1344 2132 122 0 10 chr12 85699812 85700116 -58582373 - AluSx SINE Alu -11 301 1 456 335 52 19 chr12 85700165 85700434 -58582055 - L1ME LINE L1 -5638 1309 1032 969 206 66 47 chr12 85700434 85700793 -58581696 - MSTC LTR MaLR 0 428 1 334 297 83 21 chr12 85700793 85700938 -58581551 - L1ME LINE L1 -5911 1036 883 1914 165 7 0 chr12 85701095 85701398 -58581091 - AluJb SINE Alu -6 306 2 2011 120 3 41 chr12 85701632 85701949 -58580540 + AluSg1 SINE Alu 4 308 -1 264 148 19 37 chr12 85702497 85702551 -58579938 - L2 LINE L2 0 3313 3261 451 189 105 0 chr12 85702984 85703079 -58579410 + L2 LINE L2 3197 3301 -12 1706 160 38 11 chr12 85703491 85703778 -58578711 - AluJb SINE Alu -17 295 1 524 153 27 9 chr12 85703782 85703893 -58578596 - L1MA4A LINE L1 -8 6295 6183 1281 164 11 11 chr12 85703894 85704174 -58578315 - L1MA4A LINE L1 -183 6120 5841 567 329 169 17 chr12 85704297 85704592 -58577897 + L2 LINE L2 2933 3272 0 396 280 113 36 chr12 85704824 85704992 -58577497 - L2 LINE L2 -14 3299 3119 2166 109 0 35 chr12 85705000 85705145 -58577344 + AluSx SINE Alu 1 150 -162 2147 130 7 0 chr12 85705145 85705438 -58577051 + AluSp SINE Alu 1 295 -18 2166 109 0 35 chr12 85705438 85705603 -58576886 + AluSx SINE Alu 150 300 -12 1700 144 87 35 chr12 85705641 85705988 -58576501 - MLT1A1 LTR MaLR 0 365 1 524 297 142 9 chr12 85705988 85706335 -58576154 - L2 LINE L2 -232 3081 2702 199 279 0 0 chr12 85706338 85706381 -58576108 - L2 LINE L2 -16 3256 3214 25 0 0 0 chr12 85707010 85707035 -58575454 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr12 85707087 85707109 -58575380 + AT_rich Low_complexity Low_complexity 1 22 0 902 329 84 30 chr12 85707427 85707591 -58574898 - L2 LINE L2 -32 3281 3127 1938 72 8 0 chr12 85707591 85707828 -58574661 + AluSc SINE Alu 1 239 -70 902 329 84 30 chr12 85707828 85708104 -58574385 - L2 LINE L2 -186 3127 2817 25 31 0 0 chr12 85708238 85708270 -58574219 + AT_rich Low_complexity Low_complexity 1 32 0 637 233 116 29 chr12 85708676 85708848 -58573641 - MER5A DNA MER1_type 0 189 3 690 216 16 0 chr12 85709502 85709627 -58572862 + MER5A DNA MER1_type 1 127 -62 1560 141 70 37 chr12 85709629 85709928 -58572561 - AluJo SINE Alu -3 309 1 439 308 157 0 chr12 85709973 85710171 -58572318 + L1M4 LINE L1 4056 4284 -1862 1888 127 16 47 chr12 85710194 85710327 -58572162 + AluSx SINE Alu 1 137 -175 2288 98 0 3 chr12 85710327 85710632 -58571857 + AluSc SINE Alu 1 304 -5 1888 127 16 47 chr12 85710632 85710820 -58571669 + AluSx SINE Alu 137 312 0 298 235 59 0 chr12 85710941 85711043 -58571446 + L1M4 LINE L1 4552 4659 -1487 195 208 188 0 chr12 85711163 85711211 -58571278 + L2 LINE L2 3257 3313 0 914 171 18 51 chr12 85711376 85711593 -58570896 - THE1B LTR MaLR 0 364 155 4660 131 52 39 chr12 85711596 85713114 -58569375 - pTR5 LTR ERV1 -1 2437 741 837 135 61 14 chr12 85713116 85713264 -58569225 - THE1B LTR MaLR -220 155 1 235 241 76 0 chr12 85713273 85713352 -58569137 + L1P LINE L1 4965 5049 -1097 200 209 0 0 chr12 85713528 85713571 -58568918 + A-rich Low_complexity Low_complexity 3 45 0 270 0 0 0 chr12 85713578 85713608 -58568881 + (CA)n Simple_repeat Simple_repeat 2 31 0 587 230 58 92 chr12 85713669 85713707 -58568782 + L1ME LINE L1 5569 5607 -555 2034 123 11 0 chr12 85713707 85713991 -58568498 + AluSx SINE Alu 1 287 -25 587 230 58 92 chr12 85713991 85714203 -58568286 + L1ME LINE L1 5607 5816 -346 803 195 32 72 chr12 85714267 85714488 -58568001 + L2 LINE L2 3102 3313 0 238 255 0 0 chr12 85714596 85714643 -58567846 + (CA)n Simple_repeat Simple_repeat 2 48 0 203 282 101 121 chr12 85715279 85715428 -58567061 + L2 LINE L2 3125 3270 -2 205 216 0 78 chr12 85716297 85716348 -58566141 - L2 LINE L2 -7 3265 3219 553 350 37 5 chr12 85716574 85716740 -58565749 + MIR SINE MIR 26 202 -60 2513 165 19 2 chr12 85716740 85717158 -58565331 + MSTB LTR MaLR 2 426 0 553 350 37 5 chr12 85717158 85717208 -58565281 + MIR SINE MIR 202 249 -13 2347 106 6 0 chr12 85718246 85718557 -58563932 + AluSq SINE Alu 1 313 0 207 0 0 0 chr12 85718893 85718916 -58563573 + (T)n Simple_repeat Simple_repeat 1 23 0 2292 101 0 0 chr12 85719057 85719364 -58563125 - AluSx SINE Alu -5 307 1 551 167 173 40 chr12 85720170 85720320 -58562169 - MER58B DNA MER1_type 0 341 172 198 0 0 0 chr12 85720348 85720370 -58562119 + (A)n Simple_repeat Simple_repeat 1 22 0 284 246 0 0 chr12 85720376 85720433 -58562056 - MER58B DNA MER1_type -284 57 1 400 216 80 0 chr12 85721234 85721322 -58561167 + AluJ/FLAM SINE Alu 1 95 -217 2118 150 53 14 chr12 85721478 85721912 -58560577 + L1MB3 LINE L1 5733 6183 0 21 0 0 0 chr12 85722614 85722635 -58559854 + AT_rich Low_complexity Low_complexity 1 21 0 1937 120 29 4 chr12 85722652 85722969 -58559520 - AluSq SINE Alu 0 324 1 2352 84 3 0 chr12 85723113 85723412 -58559077 - AluSp SINE Alu -13 300 1 1632 135 106 31 chr12 85724193 85724542 -58557947 - THE1C LTR MaLR 0 375 1 308 323 146 0 chr12 85724756 85724886 -58557603 + MER5A DNA MER1_type 41 189 0 283 283 214 35 chr12 85725058 85725203 -58557286 + MER5B DNA MER1_type 5 175 -3 199 279 29 29 chr12 85725238 85725306 -58557183 - MER5A DNA MER1_type -77 112 45 221 339 222 17 chr12 85725439 85725619 -58556870 - L2 LINE L2 -36 3236 3020 413 335 128 44 chr12 85725846 85726305 -58556184 - L2 LINE L2 -580 2734 2237 876 256 127 12 chr12 85726320 85726644 -58555845 + L1MEc LINE L1 36 396 -6000 825 201 95 71 chr12 85726713 85727061 -58555428 + L1ME1 LINE L1 5817 6166 0 445 83 0 0 chr12 85727149 85727209 -58555280 + AluY SINE Alu 7 66 -244 3617 154 7 11 chr12 85727327 85728425 -58554064 + L1P4 LINE L1 4582 5675 -490 1465 170 113 18 chr12 85728428 85728711 -58553778 + AluSg SINE Alu 1 310 0 1911 72 0 12 chr12 85729470 85729721 -58552768 + AluY SINE Alu 47 294 -17 215 306 8 60 chr12 85729769 85729903 -58552586 - L2 LINE L2 -1220 2094 1968 1886 122 12 0 chr12 85730621 85730875 -58551614 - AluSq SINE Alu -56 257 1 237 65 0 0 chr12 85730887 85730918 -58551571 + (A)n Simple_repeat Simple_repeat 1 31 0 286 133 0 0 chr12 85730930 85730975 -58551514 + Alu SINE Alu 1 45 -254 1996 125 11 0 chr12 85731130 85731411 -58551078 + AluSx SINE Alu 1 284 -28 212 357 24 0 chr12 85732726 85732810 -58549679 + MIR3 SINE MIR 110 195 -13 199 279 0 0 chr12 85733322 85733365 -58549124 + L2 LINE L2 3214 3256 -16 524 297 142 9 chr12 85733368 85733715 -58548774 + L2 LINE L2 2702 3081 -232 1700 144 87 35 chr12 85733715 85734062 -58548427 + MLT1A1 LTR MaLR 1 365 0 2166 109 0 35 chr12 85734100 85734265 -58548224 - AluSx SINE Alu -12 300 150 2147 130 7 0 chr12 85734265 85734558 -58547931 - AluSp SINE Alu -18 295 1 2166 109 0 35 chr12 85734558 85734703 -58547786 - AluSx SINE Alu -162 150 1 396 280 113 36 chr12 85734711 85734879 -58547610 + L2 LINE L2 3119 3299 -14 567 329 169 17 chr12 85735111 85735406 -58547083 - L2 LINE L2 0 3272 2933 1281 164 11 11 chr12 85735529 85735809 -58546680 + L1MA4A LINE L1 5841 6120 -183 524 153 27 9 chr12 85735810 85735921 -58546568 + L1MA4A LINE L1 6183 6295 -8 1706 160 38 11 chr12 85735925 85736212 -58546277 + AluJb SINE Alu 1 295 -17 451 189 105 0 chr12 85736624 85736719 -58545770 - L2 LINE L2 -12 3301 3197 264 148 19 37 chr12 85737153 85737207 -58545282 + L2 LINE L2 3261 3313 0 2116 119 0 38 chr12 85737755 85738075 -58544414 - AluSg1 SINE Alu -1 308 1 1957 164 3 0 chr12 85738305 85738609 -58543880 + AluJb SINE Alu 2 306 -6 334 297 83 21 chr12 85738766 85738911 -58543578 + L1ME LINE L1 141 294 -5911 969 204 79 33 chr12 85738911 85739269 -58543220 + MSTC LTR MaLR 1 428 0 456 335 52 19 chr12 85739269 85739538 -58542951 + L1ME LINE L1 290 567 -5638 2167 122 0 7 chr12 85739587 85739890 -58542599 + AluSx SINE Alu 1 301 -11 818 282 100 27 chr12 85740186 85740934 -58541555 + L1ME LINE L1 602 1577 -4819 506 249 100 25 chr12 85741018 85741038 -58541451 + L1ME LINE L1 1806 1823 -4573 1654 216 39 65 chr12 85741038 85741557 -58540932 - MLT1D LTR MaLR 0 505 1 506 249 100 25 chr12 85741557 85741777 -58540712 + L1ME LINE L1 1823 2064 -4332 300 182 18 0 chr12 85741777 85741832 -58540657 + Charlie6 DNA MER1_type 1 56 -3444 8576 185 67 37 chr12 85741837 85743133 -58539356 + Charlie6 DNA MER1_type 337 1593 -1907 2242 116 0 0 chr12 85743133 85743427 -58539062 + AluSc SINE Alu 9 302 -7 8576 185 67 37 chr12 85743427 85743623 -58538866 + Charlie6 DNA MER1_type 1593 1782 -1718 1705 174 0 38 chr12 85743623 85743939 -58538550 - AluJb SINE Alu -8 304 1 8576 185 67 37 chr12 85743939 85744407 -58538082 + Charlie6 DNA MER1_type 1782 2235 -1265 192 40 0 0 chr12 85744407 85744432 -58538057 + (GA)n Simple_repeat Simple_repeat 2 26 0 8576 185 67 37 chr12 85744432 85744467 -58538022 + Charlie6 DNA MER1_type 2235 2267 -1233 2202 120 3 7 chr12 85744467 85744768 -58537721 + AluSx SINE Alu 1 300 -12 8576 185 67 37 chr12 85744768 85744882 -58537607 + Charlie6 DNA MER1_type 2267 2512 -988 2038 254 86 48 chr12 85744916 85745256 -58537233 - L1MCc LINE L1 -4416 2706 2380 2398 99 0 0 chr12 85745256 85745560 -58536929 + AluSx SINE Alu 1 304 -8 2038 254 86 48 chr12 85745560 85746836 -58535653 - L1MCc LINE L1 -4742 2380 796 1102 310 58 24 chr12 85746863 85747483 -58535006 - L1MCc LINE L1 -5759 664 24 402 288 80 6 chr12 85747536 85747699 -58534790 - L1M4 LINE L1 -1300 4846 4672 333 238 72 55 chr12 85747844 85748025 -58534464 - L1ME4a LINE L1 -3 6118 5935 72 40 0 0 chr12 85748055 85748155 -58534334 + AT_rich Low_complexity Low_complexity 1 100 0 2244 86 3 16 chr12 85748678 85748991 -58533498 + AluSx SINE Alu 1 309 -3 246 267 0 89 chr12 85748992 85749048 -58533441 - L1ME4a LINE L1 -579 5583 5536 2309 92 0 0 chr12 85749048 85749354 -58533135 + AluY SINE Alu 1 306 -5 246 267 0 89 chr12 85749354 85749387 -58533102 - L1ME4a LINE L1 -626 5536 5502 6468 62 3 21 chr12 85749412 85750765 -58531724 - L1PA5 LINE L1 -9 6145 4809 2134 125 3 0 chr12 85750765 85751076 -58531413 - AluSq SINE Alu -1 312 1 288 0 0 0 chr12 85751373 85751405 -58531084 + (TG)n Simple_repeat Simple_repeat 1 32 0 408 297 180 17 chr12 85751405 85751705 -58530784 - L1ME4a LINE L1 -1176 4970 4622 2782 219 75 15 chr12 85751744 85752535 -58529954 - L1ME4a LINE L1 -1800 4346 3509 2239 78 0 42 chr12 85752606 85752914 -58529575 - AluY SINE Alu -14 297 3 1191 247 21 6 chr12 85752917 85753461 -58529028 + MLT2E LTR ERVL 32 620 -8 2295 257 225 25 chr12 85754015 85754322 -58528167 + L2 LINE L2 1763 2007 -1306 2476 76 0 0 chr12 85754322 85754625 -58527864 - AluSc SINE Alu -6 303 1 2295 257 225 25 chr12 85754625 85755584 -58526905 + L2 LINE L2 2007 3291 -22 231 274 36 24 chr12 85755823 85755907 -58526582 + MLT1K LTR MaLR 132 216 -372 869 203 21 42 chr12 85756554 85756618 -58525871 - MER5A DNA MER1_type -1 188 124 1523 143 67 37 chr12 85756618 85756918 -58525571 + AluJo SINE Alu 1 309 -3 869 203 21 42 chr12 85756918 85757045 -58525444 - MER5A DNA MER1_type -65 124 1 626 233 116 29 chr12 85757699 85757871 -58524618 + MER5A DNA MER1_type 3 189 0 25 31 0 0 chr12 85758277 85758309 -58524180 + AT_rich Low_complexity Low_complexity 1 32 0 893 329 84 30 chr12 85758443 85758719 -58523770 + L2 LINE L2 2817 3127 -186 1901 72 8 0 chr12 85758719 85758956 -58523533 - AluSc SINE Alu -70 239 1 893 329 84 30 chr12 85758956 85759120 -58523369 + L2 LINE L2 3127 3281 -32 407 271 115 16 chr12 85759261 85759383 -58523106 - L2 LINE L2 0 3272 3139 22 35 0 0 chr12 85759732 85759761 -58522728 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr12 85760983 85761003 -58521486 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 2487 50 16 3 chr12 85761110 85761413 -58521076 + AluY SINE Alu 1 307 -4 190 291 0 55 chr12 85761618 85761673 -58520816 + MIR3 SINE MIR 111 162 -46 22 0 0 0 chr12 85762071 85762093 -58520396 + AT_rich Low_complexity Low_complexity 1 22 0 1897 102 4 8 chr12 85762925 85763189 -58519300 - AluSx SINE Alu -11 301 39 207 211 0 28 chr12 85765637 85765708 -58516781 + A-rich Low_complexity Low_complexity 2 70 0 22 94 0 0 chr12 85766938 85767002 -58515487 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr12 85768231 85768253 -58514236 + AT_rich Low_complexity Low_complexity 1 22 0 1598 191 3 13 chr12 85769840 85770155 -58512334 + AluJo SINE Alu 1 312 0 21 0 0 0 chr12 85770488 85770509 -58511980 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr12 85770657 85770693 -58511796 + AT_rich Low_complexity Low_complexity 1 36 0 30 59 0 0 chr12 85771244 85771295 -58511194 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr12 85771700 85771721 -58510768 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr12 85772547 85772577 -58509912 + (A)n Simple_repeat Simple_repeat 1 30 0 1620 174 3 43 chr12 85773095 85773399 -58509090 + AluJb SINE Alu 1 292 -20 2109 88 3 11 chr12 85774553 85774858 -58507631 - AluSx SINE Alu 0 303 1 22 35 0 0 chr12 85775362 85775391 -58507098 + AT_rich Low_complexity Low_complexity 1 29 0 284 297 62 62 chr12 85775518 85775663 -58506826 + MER103 DNA DNA 22 166 0 342 263 111 35 chr12 85776571 85776742 -58505747 + Charlie8 DNA MER1_type 43 226 -2191 429 331 116 67 chr12 85776964 85777425 -58505064 + L2 LINE L2 2564 3042 -230 2089 101 7 7 chr12 85777434 85777730 -58504759 - AluSp SINE Alu -17 296 1 1720 162 17 7 chr12 85778863 85779153 -58503336 - AluJb SINE Alu -19 293 1 575 277 12 24 chr12 85779246 85779412 -58503077 + MER104 DNA Tc2 14 177 -3 1288 186 20 48 chr12 85779698 85779993 -58502496 - AluJo SINE Alu -13 299 13 664 195 157 23 chr12 85780990 85781252 -58501237 - MER97b DNA MER1_type? -261 792 496 1720 171 3 3 chr12 85781259 85781546 -58500943 - AluJo SINE Alu -25 287 1 1398 166 55 7 chr12 85781570 85781860 -58500629 - L1MB2 LINE L1 -7 6164 5861 22 35 0 0 chr12 85782383 85782412 -58500077 + AT_rich Low_complexity Low_complexity 1 29 0 538 295 49 6 chr12 85783469 85783652 -58498837 - L1ME1 LINE L1 -12 6154 5964 371 216 29 79 chr12 85783902 85784041 -58498448 + L1MC5 LINE L1 7687 7818 -143 381 214 175 0 chr12 85784502 85784656 -58497833 + L1M4 LINE L1 2254 2434 -3712 21 36 0 0 chr12 85784692 85784720 -58497769 + AT_rich Low_complexity Low_complexity 1 28 0 658 290 52 20 chr12 85784790 85785038 -58497451 + L1ME3A LINE L1 5910 6165 -5 213 231 0 0 chr12 85785641 85785680 -58496809 + polypyrimidine Low_complexity Low_complexity 3 41 0 717 204 142 24 chr12 85785750 85785961 -58496528 - Charlie8 DNA MER1_type -2134 283 48 248 211 13 0 chr12 85787170 85787246 -58495243 + CT-rich Low_complexity Low_complexity 3 79 0 231 239 0 0 chr12 85787596 85787663 -58494826 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 25 0 0 0 chr12 85788688 85788713 -58493776 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr12 85788738 85788768 -58493721 + AT_rich Low_complexity Low_complexity 1 30 0 196 229 16 33 chr12 85789002 85789058 -58493431 - L3 LINE CR1 -298 1279 1224 2166 117 0 3 chr12 85789058 85789366 -58493123 - AluSx SINE Alu -3 309 3 366 287 258 21 chr12 85789411 85789646 -58492843 - L3 LINE CR1 -619 958 780 1391 181 43 7 chr12 85789646 85789928 -58492561 + AluJb SINE Alu 1 292 -20 366 287 258 21 chr12 85789928 85790072 -58492417 - L3 LINE CR1 -797 780 489 2389 130 92 7 chr12 85790097 85790547 -58491942 + Tigger2 DNA MER2_type 1 2718 0 1643 60 10 0 chr12 85790652 85790851 -58491638 - AluY SINE Alu -12 299 99 28 48 0 0 chr12 85790993 85791035 -58491454 + AT_rich Low_complexity Low_complexity 1 42 0 287 266 62 23 chr12 85791405 85791533 -58490956 - L1M2 LINE L1 -860 5440 5308 470 312 142 16 chr12 85791533 85791780 -58490709 - L2 LINE L2 -3 3310 3033 216 182 0 0 chr12 85792622 85792666 -58489823 + (TATG)n Simple_repeat Simple_repeat 1 44 0 26 0 0 0 chr12 85792743 85792769 -58489720 + AT_rich Low_complexity Low_complexity 1 26 0 185 280 27 53 chr12 85792861 85792936 -58489553 + MIR SINE MIR 20 92 -170 31 76 0 0 chr12 85792967 85793033 -58489456 + AT_rich Low_complexity Low_complexity 1 66 0 1713 147 4 18 chr12 85793128 85793407 -58489082 + AluSx SINE Alu 35 309 -3 228 35 0 0 chr12 85793600 85793629 -58488860 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1203 203 72 38 chr12 85793815 85794105 -58488384 - AluJo SINE Alu -2 300 1 2138 156 69 10 chr12 85794621 85795025 -58487464 + MSTA LTR MaLR 1 428 0 6844 210 78 30 chr12 85795426 85796171 -58486318 - L1MDa LINE L1 -4664 1876 1168 1966 158 0 16 chr12 85796171 85796488 -58486001 - AluJb SINE Alu 0 312 1 6844 210 78 30 chr12 85796488 85797467 -58485022 - L1MDa LINE L1 -5372 1168 69 907 243 102 62 chr12 85797806 85798206 -58484283 + HsTC2a DNA Tc2 7 422 -322 24 0 0 0 chr12 85798258 85798282 -58484207 + AT_rich Low_complexity Low_complexity 1 24 0 332 261 185 34 chr12 85798531 85798650 -58483839 + MIR SINE MIR 2 138 -124 1482 184 9 32 chr12 85798650 85798965 -58483524 - AluJo SINE Alu -4 308 1 217 0 0 0 chr12 85798973 85798997 -58483492 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2300 64 0 0 chr12 85798997 85799280 -58483209 - AluY SINE Alu -1 306 1 1372 91 25 0 chr12 85799390 85799587 -58482902 - L1P4 LINE L1 -429 5736 5535 745 233 99 34 chr12 85799597 85799859 -58482630 - MER46C DNA MER2_type -54 284 6 185 286 0 48 chr12 85799894 85799957 -58482532 + MIR SINE MIR 200 259 -3 4290 38 21 0 chr12 85801055 85801576 -58480913 + L1PA3 LINE L1 5623 6154 -1 31 0 0 0 chr12 85801576 85801607 -58480882 + AT_rich Low_complexity Low_complexity 1 31 0 217 263 10 121 chr12 85801607 85801706 -58480783 + L2 LINE L2 3021 3108 -164 690 331 36 20 chr12 85802356 85802604 -58479885 - MIR SINE MIR -10 252 1 827 285 48 100 chr12 85802692 85803085 -58479404 - L2 LINE L2 -349 2965 2600 1954 109 0 7 chr12 85803085 85803359 -58479130 + AluY SINE Alu 40 311 0 827 285 48 100 chr12 85803359 85803445 -58479044 - L2 LINE L2 -714 2600 2511 1407 198 10 40 chr12 85803618 85803916 -58478573 + AluJo SINE Alu 1 289 -23 555 271 18 6 chr12 85804394 85804560 -58477929 + L1MC5 LINE L1 5769 5936 -1872 25 31 0 0 chr12 85804691 85804723 -58477766 + AT_rich Low_complexity Low_complexity 1 32 0 780 163 108 102 chr12 85805032 85805327 -58477162 + L1MC5 LINE L1 6647 6943 -1018 35216 100 16 15 chr12 85805339 85811132 -58471357 + L1P2 LINE L1 11 5808 -346 287 388 62 0 chr12 85812564 85812742 -58469747 + MIR3 SINE MIR 16 204 -4 328 315 125 53 chr12 85815258 85815544 -58466945 + L1ME4a LINE L1 5625 5944 -177 2128 119 7 0 chr12 85815544 85815847 -58466642 + AluSg1 SINE Alu 1 305 -4 328 315 125 53 chr12 85815847 85815919 -58466570 + L1ME4a LINE L1 5944 6009 -112 376 221 63 89 chr12 85816022 85816180 -58466309 + L2 LINE L2 2833 2986 -327 24 0 0 0 chr12 85816800 85816824 -58465665 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 85818922 85818943 -58463546 + AT_rich Low_complexity Low_complexity 1 21 0 566 293 88 0 chr12 85819109 85819256 -58463233 + MER119 DNA MER1_type 1 160 -423 342 218 59 20 chr12 85819256 85819357 -58463132 + MER119 DNA MER1_type 474 578 -5 226 170 94 0 chr12 85819464 85819517 -58462972 - MER58 DNA MER1_type -2200 220 163 339 220 0 0 chr12 85819548 85819607 -58462882 - MER58 DNA MER1_type -154 61 3 396 316 44 7 chr12 85819764 85819900 -58462589 - MIR SINE MIR -6 256 116 188 308 109 95 chr12 85820019 85820168 -58462321 + L2 LINE L2 1944 2089 -1225 330 26 0 0 chr12 85820168 85820207 -58462282 + (TG)n Simple_repeat Simple_repeat 2 40 0 188 308 109 95 chr12 85820207 85820225 -58462264 + L2 LINE L2 2089 2105 -1209 210 37 0 0 chr12 85820225 85820252 -58462237 + (TG)n Simple_repeat Simple_repeat 2 28 0 188 308 109 95 chr12 85820252 85820875 -58461614 + L2 LINE L2 2105 2746 -568 2546 69 0 0 chr12 85821981 85822287 -58460202 + AluY SINE Alu 1 306 -5 2407 94 3 0 chr12 85822319 85822627 -58459862 + AluSq SINE Alu 1 309 -4 1804 125 68 0 chr12 85823044 85823325 -58459164 + AluSg SINE Alu 2 301 -9 443 279 40 36 chr12 85824014 85824236 -58458253 + L1MC4 LINE L1 7708 7930 -112 227 177 32 16 chr12 85824416 85824478 -58458011 + GA-rich Low_complexity Low_complexity 3 65 0 332 276 20 41 chr12 85824573 85824671 -58457818 - MIR SINE MIR -148 114 19 180 273 144 15 chr12 85825882 85826014 -58456475 - L2 LINE L2 -6 3307 3159 1581 187 11 7 chr12 85826047 85826331 -58456158 - AluJb SINE Alu -27 285 1 257 311 182 8 chr12 85827008 85827140 -58455349 - MIR3 SINE MIR -13 195 41 1067 186 52 14 chr12 85827448 85827658 -58454831 + AluJo SINE Alu 1 218 -94 21 0 0 0 chr12 85828373 85828394 -58454095 + AT_rich Low_complexity Low_complexity 1 21 0 1975 125 10 3 chr12 85829260 85829556 -58452933 + AluSx SINE Alu 1 298 -14 2526 175 52 7 chr12 85830187 85830724 -58451765 - L1MB8 LINE L1 0 6178 5618 1846 152 24 7 chr12 85831382 85831678 -58450811 - AluJb SINE Alu -11 301 1 302 244 72 36 chr12 85832790 85832937 -58449552 - MIR SINE MIR -63 145 44 30 45 0 0 chr12 85833833 85833877 -58448612 + AT_rich Low_complexity Low_complexity 1 44 0 1007 151 18 0 chr12 85834128 85834294 -58448195 - FRAM SINE Alu -8 168 1 1623 175 28 0 chr12 85835572 85835857 -58446632 + AluJo SINE Alu 1 293 -19 22 0 0 0 chr12 85836368 85836390 -58446099 + AT_rich Low_complexity Low_complexity 1 22 0 287 388 62 0 chr12 85837848 85838026 -58444463 + MIR3 SINE MIR 16 204 -4 326 324 134 35 chr12 85840540 85840824 -58441665 + L1ME4a LINE L1 5625 5936 -185 2172 118 3 0 chr12 85840826 85841130 -58441359 + AluSg1 SINE Alu 1 305 -4 24 0 0 0 chr12 85841130 85841154 -58441335 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr12 85841176 85841219 -58441270 + AT_rich Low_complexity Low_complexity 1 43 0 376 221 63 89 chr12 85841305 85841463 -58441026 + L2 LINE L2 2833 2986 -327 24 0 0 0 chr12 85842084 85842108 -58440381 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 85844206 85844227 -58438262 + AT_rich Low_complexity Low_complexity 1 21 0 566 293 88 0 chr12 85844393 85844540 -58437949 + MER119 DNA MER1_type 1 160 -423 342 218 59 20 chr12 85844540 85844641 -58437848 + MER119 DNA MER1_type 474 578 -5 226 170 94 0 chr12 85844748 85844801 -58437688 - MER58 DNA MER1_type -121 220 163 339 220 0 0 chr12 85844832 85844891 -58437598 - MER58 DNA MER1_type -154 61 3 396 316 44 7 chr12 85845048 85845184 -58437305 - MIR SINE MIR -6 256 116 215 309 109 94 chr12 85845303 85845451 -58437038 + L2 LINE L2 1944 2088 -1226 330 26 0 0 chr12 85845451 85845490 -58436999 + (TG)n Simple_repeat Simple_repeat 2 40 0 215 309 109 94 chr12 85845490 85845508 -58436981 + L2 LINE L2 2088 2104 -1210 210 37 0 0 chr12 85845508 85845535 -58436954 + (TG)n Simple_repeat Simple_repeat 2 28 0 215 309 109 94 chr12 85845535 85846158 -58436331 + L2 LINE L2 2104 2746 -568 2405 72 3 7 chr12 85847264 85847571 -58434918 + AluY SINE Alu 1 306 -5 2407 94 3 0 chr12 85847603 85847911 -58434578 + AluSq SINE Alu 1 309 -4 1804 125 68 0 chr12 85848328 85848609 -58433880 + AluSg SINE Alu 2 301 -9 443 279 40 36 chr12 85849298 85849520 -58432969 + L1MC4 LINE L1 7708 7930 -112 227 177 32 16 chr12 85849700 85849762 -58432727 + GA-rich Low_complexity Low_complexity 3 65 0 335 276 20 41 chr12 85849857 85849955 -58432534 - MIR SINE MIR -148 114 19 324 244 145 8 chr12 85851164 85851295 -58431194 - L2 LINE L2 -6 3307 3159 1611 187 11 7 chr12 85851328 85851612 -58430877 - AluJb SINE Alu -27 285 1 253 311 182 8 chr12 85852289 85852421 -58430068 - MIR3 SINE MIR -13 195 41 1082 186 52 14 chr12 85852729 85852939 -58429550 + AluJo SINE Alu 1 218 -94 21 0 0 0 chr12 85853654 85853675 -58428814 + AT_rich Low_complexity Low_complexity 1 21 0 2012 125 10 3 chr12 85854540 85854836 -58427653 + AluSx SINE Alu 1 298 -14 2512 175 52 7 chr12 85855467 85856004 -58426485 - L1MB8 LINE L1 0 6178 5618 1876 152 24 7 chr12 85856662 85856958 -58425531 - AluJb SINE Alu -11 301 1 303 244 72 36 chr12 85858069 85858216 -58424273 - MIR SINE MIR -63 145 44 30 45 0 0 chr12 85859112 85859156 -58423333 + AT_rich Low_complexity Low_complexity 1 44 0 1020 151 18 0 chr12 85859407 85859573 -58422916 - FRAM SINE Alu -8 168 1 23 0 0 0 chr12 85860375 85860398 -58422091 + AT_rich Low_complexity Low_complexity 1 23 0 199 355 33 50 chr12 85860793 85860914 -58421575 + MIR3 SINE MIR 85 203 -5 24 0 0 0 chr12 85861268 85861292 -58421197 + AT_rich Low_complexity Low_complexity 1 24 0 328 269 35 57 chr12 85862497 85862655 -58419834 + MER5A DNA MER1_type 1 164 -23 300 281 34 107 chr12 85862520 85862698 -58419791 - MER5A DNA MER1_type -23 166 2 * 753 264 227 16 chr12 85863367 85863798 -58418691 - L1MC4a LINE L1 -1920 5888 5367 350 239 83 0 chr12 85864111 85864220 -58418269 + MER112 DNA MER1_type 39 156 -104 1348 159 0 5 chr12 85864369 85864576 -58417913 + AluJb SINE Alu 1 206 -106 268 383 49 6 chr12 85865890 85866073 -58416416 + L2 LINE L2 2220 2410 -904 943 153 19 0 chr12 85866194 85866351 -58416138 + FRAM SINE Alu 1 160 -6 183 283 0 0 chr12 85866444 85866490 -58415999 + L2 LINE L2 2175 2220 -1094 1959 153 0 37 chr12 85866612 85866933 -58415556 + AluSx SINE Alu 1 309 -3 529 290 100 15 chr12 85867079 85867439 -58415050 - L2 LINE L2 0 3272 2847 * 955 249 296 3 chr12 85867429 85867814 -58414675 - L2 LINE L2 -578 2736 2239 342 347 149 35 chr12 85867824 85867979 -58414510 + L2 LINE L2 2323 2459 -855 1692 202 79 81 chr12 85867979 85868534 -58413955 + MLT2B3 LTR ERVL 1 554 0 342 347 149 35 chr12 85868534 85868954 -58413535 + L2 LINE L2 2459 2964 -350 256 363 33 0 chr12 85869797 85869888 -58412601 + MIR SINE MIR 32 125 -83 762 271 35 10 chr12 85869894 85870093 -58412396 + MIR SINE MIR 16 219 -43 21 82 0 0 chr12 85870325 85870374 -58412115 + AT_rich Low_complexity Low_complexity 1 49 0 2402 94 23 66 chr12 85870609 85871001 -58411488 + THE1C LTR MaLR 1 375 0 10370 126 30 3 chr12 85871001 85872538 -58409951 + THE1C-int LTR MaLR 1 1578 -2 1674 142 54 56 chr12 85872540 85872965 -58409524 + THE1C LTR MaLR 1 428 0 753 279 48 20 chr12 85873136 85873387 -58409102 + MIR SINE MIR 2 259 -3 27 0 0 0 chr12 85874112 85874139 -58408350 + AT_rich Low_complexity Low_complexity 1 27 0 701 240 14 14 chr12 85874151 85874297 -58408192 - FRAM SINE Alu -30 146 1 289 295 54 18 chr12 85874489 85874601 -58407888 + L2 LINE L2 3179 3294 -19 1449 221 0 0 chr12 85875107 85875365 -58407124 + AluJb SINE Alu 1 258 -54 195 69 0 0 chr12 85875368 85875397 -58407092 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 360 0 0 0 chr12 85875645 85875685 -58406804 + (TG)n Simple_repeat Simple_repeat 1 40 0 252 82 0 20 chr12 85875729 85875778 -58406711 - L1MB2 LINE L1 -2 6169 6122 623 164 109 8 chr12 85875778 85875906 -58406583 - FRAM SINE Alu -15 161 21 1971 147 87 10 chr12 85875906 85876320 -58406169 - L1MB2 LINE L1 -43 6128 5683 289 295 54 18 chr12 85877272 85877384 -58405105 + L2 LINE L2 3179 3294 -19 1449 221 0 0 chr12 85877890 85878148 -58404341 + AluJb SINE Alu 1 258 -54 195 69 0 0 chr12 85878151 85878180 -58404309 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 279 0 0 0 chr12 85878428 85878459 -58404030 + (TG)n Simple_repeat Simple_repeat 2 32 0 252 82 0 20 chr12 85878504 85878553 -58403936 - L1MB2 LINE L1 -2 6169 6122 705 181 101 0 chr12 85878553 85878691 -58403798 - FRAM SINE Alu -15 161 10 626 158 55 67 chr12 85878745 85878909 -58403580 - L1MB8 LINE L1 -9 6169 6008 2151 270 116 11 chr12 85878912 85879765 -58402724 + L2 LINE L2 2215 3141 -172 1896 60 30 0 chr12 85880261 85880496 -58401993 + AluY SINE Alu 1 242 -69 257 260 0 0 chr12 85880716 85880766 -58401723 + Charlie4a DNA MER1_type 1 50 -458 943 203 66 4 chr12 85880797 85881039 -58401450 + Charlie4a DNA MER1_type 242 498 -10 2029 92 39 39 chr12 85881122 85881428 -58401061 - AluYa5 SINE Alu -5 306 1 28 48 0 0 chr12 85881700 85881742 -58400747 + AT_rich Low_complexity Low_complexity 1 42 0 526 125 0 70 chr12 85882682 85882810 -58399679 + (TTCC)n Simple_repeat Simple_repeat 3 121 0 1709 178 9 25 chr12 85882812 85883127 -58399362 - AluJo SINE Alu -2 310 1 1957 120 3 31 chr12 85883301 85883630 -58398859 - AluSq SINE Alu 0 321 1 21 0 0 0 chr12 85883692 85883713 -58398776 + AT_rich Low_complexity Low_complexity 1 21 0 2006 107 46 4 chr12 85884274 85884555 -58397934 + AluSx SINE Alu 1 293 -19 490 283 20 140 chr12 85884573 85884710 -58397779 + L2 LINE L2 2923 3075 -197 2431 85 0 0 chr12 85884710 85885005 -58397484 + AluSg SINE Alu 1 295 -15 490 283 20 140 chr12 85885005 85885217 -58397272 + L2 LINE L2 3075 3230 -42 3423 146 80 28 chr12 85885321 85885942 -58396547 - L1MB7 LINE L1 -20 6164 5498 2278 161 31 17 chr12 85885942 85886364 -58396125 + MSTC LTR MaLR 1 428 0 3423 146 80 28 chr12 85886364 85886466 -58396023 - L1MB7 LINE L1 -686 5498 5403 287 318 64 18 chr12 85886474 85886584 -58395905 + L2 LINE L2 3154 3268 -4 214 291 171 26 chr12 85887057 85887174 -58395315 + L2 LINE L2 3180 3313 0 1499 185 3 41 chr12 85887404 85887732 -58394757 + AluJo SINE Alu 1 317 0 3107 75 19 2 chr12 85887861 85888287 -58394202 + L1PA8 LINE L1 5726 6158 -14 458 265 58 77 chr12 85888366 85888428 -58394061 + L1ME4a LINE L1 5634 5696 -425 2038 117 4 0 chr12 85888428 85888735 -58393754 + AluSx SINE Alu 1 308 0 458 265 58 77 chr12 85888735 85888984 -58393505 + L1ME4a LINE L1 5696 5940 -181 2331 84 0 13 chr12 85889196 85889506 -58392983 + AluSx SINE Alu 1 306 -6 1979 149 0 0 chr12 85889881 85890163 -58392326 - AluJo SINE Alu -29 283 2 375 308 71 19 chr12 85890424 85890635 -58391854 + MARNA DNA Mariner 275 496 -90 192 77 0 0 chr12 85890691 85890717 -58391772 + (TG)n Simple_repeat Simple_repeat 2 27 0 711 164 30 37 chr12 85891362 85891496 -58390993 - FLAM_C SINE Alu 0 133 1 2103 124 0 17 chr12 85891628 85891926 -58390563 - AluSx SINE Alu -19 293 1 21 36 0 0 chr12 85892107 85892135 -58390354 + AT_rich Low_complexity Low_complexity 1 28 0 1506 171 32 14 chr12 85892350 85892630 -58389859 + AluJo SINE Alu 1 285 -27 203 61 30 0 chr12 85892630 85892663 -58389826 + (CA)n Simple_repeat Simple_repeat 2 35 0 253 304 43 22 chr12 85893058 85893150 -58389339 + MIR SINE MIR 7 100 -162 1729 175 21 24 chr12 85894442 85894779 -58387710 - MER1B DNA MER1_type -1 336 1 2170 114 0 10 chr12 85894921 85895219 -58387270 + AluSx SINE Alu 1 295 -17 267 182 0 0 chr12 85895412 85895456 -58387033 - L2 LINE L2 -8 3264 3221 308 370 78 33 chr12 85895787 85895928 -58386561 - L2 LINE L2 -575 2739 2606 2229 98 3 0 chr12 85895928 85896235 -58386254 + AluSp SINE Alu 1 308 0 308 370 78 33 chr12 85896235 85896489 -58386000 - L2 LINE L2 -708 2606 2325 21 57 0 0 chr12 85896514 85896549 -58385940 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr12 85896753 85896789 -58385700 + AT_rich Low_complexity Low_complexity 1 36 0 214 292 0 0 chr12 85900400 85900448 -58382041 + G-rich Low_complexity Low_complexity 1 48 0 385 265 0 0 chr12 85901407 85901490 -58380999 - L2 LINE L2 -4 3268 3186 402 239 77 26 chr12 85901818 85901935 -58380554 - L2 LINE L2 -4 3309 3187 22 56 0 0 chr12 85902460 85902496 -58379993 + AT_rich Low_complexity Low_complexity 1 36 0 654 170 122 27 chr12 85902759 85902906 -58379583 + FRAM SINE Alu 2 162 -4 21 0 0 0 chr12 85903100 85903121 -58379368 + AT_rich Low_complexity Low_complexity 1 21 0 380 153 0 0 chr12 85903149 85903208 -58379281 - AluJo SINE Alu -9 293 235 1155 147 5 26 chr12 85903208 85903398 -58379091 - AluJo SINE Alu -126 186 1 2153 106 3 32 chr12 85903811 85904122 -58378367 + AluSx SINE Alu 1 302 -10 1019 219 187 16 chr12 85904547 85904991 -58377498 + MER113 DNA MER1_type? 2 521 0 190 274 20 0 chr12 85905388 85905439 -58377050 + MIR SINE MIR 154 205 -57 576 279 48 24 chr12 85906095 85906303 -58376186 - L2 LINE L2 -2 3311 3099 552 240 33 0 chr12 85906385 85906506 -58375983 - MER69A DNA AcHobo -3 174 50 2267 80 10 7 chr12 85906557 85906856 -58375633 + AluSc SINE Alu 1 300 -9 440 289 114 33 chr12 85907197 85907780 -58374709 + L1MC4 LINE L1 7313 8041 -1 290 345 73 24 chr12 85907821 85908027 -58374462 + MER20 DNA MER1_type 3 218 -1 490 305 279 21 chr12 85908055 85908166 -58374323 + L2 LINE L2 1705 1786 -1528 6994 41 17 2 chr12 85908166 85908825 -58373664 - L1PA6 LINE L1 0 6154 5475 2339 74 0 32 chr12 85908825 85909137 -58373352 - AluY SINE Alu -9 302 1 6994 41 17 2 chr12 85909137 85909701 -58372788 - L1PA6 LINE L1 -679 5475 4921 490 305 279 21 chr12 85909701 85910156 -58372333 + L2 LINE L2 1786 2417 -897 188 239 49 99 chr12 85910228 85910370 -58372119 - L2 LINE L2 -213 3059 2925 250 372 0 11 chr12 85910446 85910540 -58371949 - L2 LINE L2 -456 2858 2766 511 337 17 0 chr12 85910547 85910722 -58371767 + Charlie8 DNA MER1_type 1 178 -2239 201 392 163 0 chr12 85911069 85911222 -58371267 - L2 LINE L2 -688 2626 2449 182 381 65 48 chr12 85911341 85911509 -58370980 + L3 LINE CR1 210 380 -1197 2340 81 16 0 chr12 85911689 85911996 -58370493 - AluSq SINE Alu -1 312 1 202 211 0 67 chr12 85912306 85912396 -58370093 + T-rich Low_complexity Low_complexity 6 89 0 536 268 7 0 chr12 85913090 85913243 -58369246 + L1ME1 LINE L1 6010 6163 -3 1622 236 106 24 chr12 85913524 85913864 -58368625 + MLT1F LTR MaLR 3 398 -144 2114 63 81 7 chr12 85913864 85914149 -58368340 - AluSx SINE Alu -5 307 2 1622 236 106 24 chr12 85914149 85914307 -58368182 + MLT1F LTR MaLR 398 542 0 180 0 0 0 chr12 85914502 85914522 -58367967 + (T)n Simple_repeat Simple_repeat 1 20 0 391 318 9 29 chr12 85914660 85915013 -58367476 + CT-rich Low_complexity Low_complexity 1 345 0 216 97 0 0 chr12 85915056 85915087 -58367402 + (T)n Simple_repeat Simple_repeat 1 31 0 240 328 16 0 chr12 85915205 85915266 -58367223 + Charlie8 DNA MER1_type 2 63 -2354 25 31 0 0 chr12 85915477 85915509 -58366980 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr12 85915574 85915613 -58366876 + AT_rich Low_complexity Low_complexity 1 39 0 2137 125 0 28 chr12 85915631 85915950 -58366539 - AluSx SINE Alu -2 310 1 855 168 0 45 chr12 85916235 85916390 -58366099 - AluJb SINE Alu -30 282 135 24 32 0 0 chr12 85916707 85916738 -58365751 + AT_rich Low_complexity Low_complexity 1 31 0 5680 161 18 6 chr12 85916905 85917553 -58364936 - L1MA9 LINE L1 -1 6311 5644 1119 206 46 108 chr12 85917553 85917942 -58364547 + MLT1A1 LTR MaLR 1 365 0 5680 161 18 6 chr12 85917942 85918330 -58364159 - L1MA9 LINE L1 -668 5644 5262 30 0 0 0 chr12 85918338 85918368 -58364121 + AT_rich Low_complexity Low_complexity 1 30 0 718 197 0 0 chr12 85918368 85918485 -58364004 - FLAM_C SINE Alu -15 118 2 400 82 0 0 chr12 85918485 85918546 -58363943 - L1 LINE L1 -865 5169 5109 * 3206 161 35 59 chr12 85918540 85919323 -58363166 - L1 LINE L1 -1739 4295 3532 3694 247 73 46 chr12 85919345 85921879 -58360610 - L1 LINE L1 -3808 2226 8 346 265 107 23 chr12 85921904 85922119 -58360370 - L1ME4a LINE L1 -195 5926 5694 1025 182 12 0 chr12 85922324 85922494 -58359995 - AluJb SINE Alu -138 174 3 1629 176 11 4 chr12 85922609 85922882 -58359607 + AluJb SINE Alu 26 300 -12 279 0 0 0 chr12 85922882 85922913 -58359576 + (TA)n Simple_repeat Simple_repeat 2 32 0 187 180 246 0 chr12 85923047 85923108 -58359381 + MIR SINE MIR 137 212 -50 2323 100 0 0 chr12 85923398 85923709 -58358780 - AluY SINE Alu 0 311 1 2328 88 0 0 chr12 85923805 85924101 -58358388 - AluY SINE Alu -15 296 1 1552 197 16 32 chr12 85924180 85924490 -58357999 + AluJo SINE Alu 1 305 -7 220 227 106 30 chr12 85924774 85924840 -58357649 - L2 LINE L2 -1 3312 3242 420 320 37 9 chr12 85924856 85925006 -58357483 - MIR3 SINE MIR -16 192 39 366 376 60 0 chr12 85925233 85925366 -58357123 - L2 LINE L2 -10 3262 3122 2492 65 0 0 chr12 85925982 85926290 -58356199 - AluY SINE Alu -3 308 1 2106 101 0 44 chr12 85926357 85926673 -58355816 - AluSx SINE Alu -10 302 1 384 341 57 8 chr12 85927334 85927457 -58355032 - L2 LINE L2 -8 3264 3136 367 331 150 47 chr12 85927750 85928110 -58354379 + L2 LINE L2 1344 1666 -1648 2130 138 3 0 chr12 85928110 85928421 -58354068 - AluSq SINE Alu -1 312 1 1828 96 114 11 chr12 85928422 85928693 -58353796 - AluSg1 SINE Alu -10 299 1 367 331 150 47 chr12 85928693 85929051 -58353438 + L2 LINE L2 1665 2138 -1176 676 321 136 28 chr12 85929209 85929561 -58352928 + MLT1K LTR MaLR 114 503 -85 452 247 187 13 chr12 85929720 85929870 -58352619 + MER5A DNA MER1_type 14 189 0 353 309 167 11 chr12 85930201 85930560 -58351929 + L2 LINE L2 1793 2207 -1107 275 376 95 16 chr12 85930746 85930988 -58351501 + L2 LINE L2 2192 2452 -862 922 255 36 34 chr12 85931121 85931505 -58350984 - HAL1 LINE L1 -112 2395 2011 1425 261 133 20 chr12 85931676 85932232 -58350257 - HAL1 LINE L1 -554 1953 1335 439 313 159 6 chr12 85932232 85932408 -58350081 - MLT1K LTR MaLR -342 246 44 1373 103 5 0 chr12 85932946 85933149 -58349340 - L1PA8 LINE L1 -1099 5047 4844 7003 61 3 0 chr12 85933149 85934298 -58348191 + L1PA8 LINE L1 5043 6194 0 2337 119 34 0 chr12 85934599 85934951 -58347538 + THE1B LTR MaLR 1 364 0 669 198 50 22 chr12 85935035 85935217 -58347272 - MER53 DNA DNA -2 187 1 373 333 40 13 chr12 85935893 85936043 -58346446 - MIR SINE MIR -38 224 71 22 88 0 0 chr12 85936068 85936125 -58346364 + AT_rich Low_complexity Low_complexity 1 57 0 505 279 88 28 chr12 85936290 85936505 -58345984 + MER112 DNA MER1_type 2 229 -31 229 281 0 0 chr12 85936924 85936981 -58345508 - MER5B DNA MER1_type -3 175 119 294 245 0 0 chr12 85936985 85937056 -58345433 + L1P5 LINE L1 5584 5657 -494 * 374 253 292 42 chr12 85937051 85937296 -58345193 + L1MC4a LINE L1 5756 5938 -1870 1987 146 3 3 chr12 85937296 85937597 -58344892 + AluSx SINE Alu 1 301 -11 374 253 292 42 chr12 85937597 85937758 -58344731 + L1MC4a LINE L1 5938 6264 -1544 2249 106 6 0 chr12 85937860 85938171 -58344318 + AluSp SINE Alu 1 313 0 651 229 161 5 chr12 85938375 85938593 -58343896 + L1MC4 LINE L1 6808 7059 -983 444 150 0 0 chr12 85938597 85938677 -58343812 + (GA)n Simple_repeat Simple_repeat 1 80 0 847 263 106 20 chr12 85938802 85939160 -58343329 + L1MC4 LINE L1 7107 7495 -547 330 233 11 22 chr12 85939144 85939234 -58343255 + L1MC5 LINE L1 7311 7399 -562 * 354 80 0 0 chr12 85939390 85939440 -58343049 + (CTG)n Simple_repeat Simple_repeat 1 50 0 742 233 39 6 chr12 85940358 85940538 -58341951 + MER5A DNA MER1_type 2 187 -2 567 300 53 62 chr12 85942420 85942621 -58339868 - MER102b DNA MER1_type -1087 341 143 1922 130 11 3 chr12 85942621 85942905 -58339584 - AluSx SINE Alu -26 286 1 567 300 53 62 chr12 85942905 85943043 -58339446 - MER102b DNA MER1_type -1285 143 5 499 141 0 0 chr12 85943180 85943251 -58339238 + FLAM SINE Alu 54 124 -19 186 43 0 0 chr12 85943471 85943494 -58338995 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 312 27 0 0 chr12 85943493 85943530 -58338959 + (CA)n Simple_repeat Simple_repeat 1 37 0 292 198 99 0 chr12 85943953 85944034 -58338455 - L1ME3A LINE L1 -2 6168 6080 320 0 0 24 chr12 85944341 85944382 -58338107 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 12905 89 8 6 chr12 85945002 85947596 -58334893 + L1PA7 LINE L1 3559 6153 -1 627 255 15 70 chr12 85947600 85947765 -58334724 + L1MC5 LINE L1 6931 7077 -884 2654 104 11 8 chr12 85947765 85948139 -58334350 + THE1C LTR MaLR 1 375 0 627 255 15 70 chr12 85948139 85948244 -58334245 + L1MC5 LINE L1 7077 7186 -775 1887 165 12 52 chr12 85948528 85948934 -58333555 - MLT1B LTR MaLR 0 390 1 213 377 88 25 chr12 85949604 85949843 -58332646 - L2 LINE L2 -209 3063 2810 * 287 336 80 0 chr12 85949827 85949952 -58332537 - MIR SINE MIR -98 164 30 297 0 0 0 chr12 85950016 85950049 -58332440 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1370 158 69 89 chr12 85950213 85950516 -58331973 - AluJb SINE Alu -15 297 1 665 279 52 75 chr12 85950970 85951396 -58331093 + MLT1L LTR MaLR 200 615 0 438 286 129 24 chr12 85951555 85951765 -58330724 - MIR SINE MIR -2 260 29 259 359 39 29 chr12 85951974 85952077 -58330412 - MIR SINE MIR -58 150 47 22 35 0 0 chr12 85952326 85952355 -58330134 + AT_rich Low_complexity Low_complexity 1 29 0 705 246 54 65 chr12 85953355 85953615 -58328874 + Charlie1a DNA MER1_type 1 257 -1198 1018 173 18 0 chr12 85953615 85953783 -58328706 + AluJo SINE Alu 120 290 -22 1322 183 130 39 chr12 85953799 85954106 -58328383 + Charlie1a DNA MER1_type 257 603 -2158 2310 87 7 0 chr12 85954106 85954405 -58328084 + AluSx SINE Alu 2 302 -10 1322 183 130 39 chr12 85954405 85954458 -58328031 + Charlie1a DNA MER1_type 603 650 -805 318 153 169 25 chr12 85954457 85954575 -58327914 + Charlie1a DNA MER1_type 1237 1371 -84 * 704 194 57 28 chr12 85954589 85954800 -58327689 + Charlie1a DNA MER1_type 1237 1453 -2 259 291 36 18 chr12 85954823 85954933 -58327556 - MIR SINE MIR -10 252 141 606 302 79 0 chr12 85954948 85955137 -58327352 + L2 LINE L2 2864 3067 -246 518 294 117 36 chr12 85956226 85956474 -58326015 + L2 LINE L2 3011 3278 -35 356 327 9 0 chr12 85956536 85956646 -58325843 - MIR SINE MIR -132 130 20 1755 119 0 8 chr12 85956881 85957133 -58325356 + AluSc SINE Alu 41 290 -19 304 326 42 0 chr12 85957171 85957266 -58325223 + MIR SINE MIR 50 148 -60 2003 153 0 0 chr12 85957632 85957927 -58324562 - AluSx SINE Alu -17 295 1 375 238 10 10 chr12 85958218 85958319 -58324170 + L1ME3 LINE L1 6061 6161 -1 674 175 10 0 chr12 85958424 85958527 -58323962 - 5S rRNA rRNA -10 111 8 2700 83 11 19 chr12 85958631 85959005 -58323484 - THE1C LTR MaLR 0 375 5 292 246 44 61 chr12 85959171 85959209 -58323280 + L1MC/D LINE L1 5489 5526 -644 1873 134 53 3 chr12 85959209 85959492 -58322997 + AluSx SINE Alu 1 297 -15 292 246 44 61 chr12 85959492 85959567 -58322922 + L1MC/D LINE L1 5526 5600 -570 893 248 126 3 chr12 85959672 85959982 -58322507 + L1ME2 LINE L1 5815 6162 -2 319 295 87 44 chr12 85960030 85960213 -58322276 - L3 LINE CR1 -217 1360 1170 15089 118 33 16 chr12 85960854 85962968 -58319521 + Tigger1 DNA MER2_type 3 2081 -337 2116 108 0 0 chr12 85962968 85963245 -58319244 + AluSg SINE Alu 1 277 -33 209 57 29 0 chr12 85963245 85963280 -58319209 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 15089 118 33 16 chr12 85963280 85963541 -58318948 + Tigger1 DNA MER2_type 2080 2418 0 291 317 151 25 chr12 85963656 85963855 -58318634 - L2 LINE L2 -927 2387 2164 25 51 0 0 chr12 85964499 85964538 -58317951 + AT_rich Low_complexity Low_complexity 1 39 0 819 242 65 19 chr12 85965247 85965462 -58317027 + MIR SINE MIR 17 241 -21 889 153 0 0 chr12 85965971 85966108 -58316381 - FLAM_C SINE Alu -6 137 1 227 189 38 0 chr12 85966716 85966769 -58315720 + L2 LINE L2 3258 3312 -1 477 294 27 7 chr12 85968176 85968322 -58314167 - L2 LINE L2 -8 3264 3116 251 272 43 43 chr12 85968386 85968478 -58314011 + MER5B DNA MER1_type 87 178 0 531 234 278 15 chr12 85968759 85968964 -58313525 - MIR SINE MIR 0 262 4 656 239 72 0 chr12 85969006 85969186 -58313303 + L1MC/D LINE L1 5574 5766 -2042 1606 184 59 28 chr12 85969827 85970181 -58312308 - MLT1A1 LTR MaLR 0 365 1 504 264 78 35 chr12 85970371 85970655 -58311834 + HAL1b LINE L1 758 1053 -295 422 61 15 0 chr12 85970990 85971056 -58311433 + (CA)n Simple_repeat Simple_repeat 2 68 0 225 65 0 0 chr12 85971060 85971091 -58311398 + (TC)n Simple_repeat Simple_repeat 1 31 0 1344 222 129 61 chr12 85971674 85972179 -58310310 + MLT1F LTR MaLR 1 539 -3 24 0 0 0 chr12 85972534 85972558 -58309931 + AT_rich Low_complexity Low_complexity 1 24 0 2221 110 3 3 chr12 85972934 85973233 -58309256 + AluSq SINE Alu 1 299 -14 1716 171 10 7 chr12 85976443 85976742 -58305747 - AluJb SINE Alu -10 302 3 2854 128 60 34 chr12 85977122 85977655 -58304834 + L1PA16 LINE L1 5620 6166 0 185 65 32 0 chr12 85977674 85977705 -58304784 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2049 106 7 23 chr12 85978281 85978582 -58303907 + AluSx SINE Alu 1 296 -16 2094 222 75 38 chr12 85979304 85979347 -58303142 - L1ME2 LINE L1 -10 6154 6114 450 0 0 0 chr12 85979347 85979397 -58303092 + (TA)n Simple_repeat Simple_repeat 2 51 0 2094 222 75 38 chr12 85979397 85980033 -58302456 - L1ME2 LINE L1 -50 6114 5450 338 214 155 48 chr12 85980474 85980577 -58301912 + L2 LINE L2 3196 3309 -4 250 359 121 60 chr12 85981059 85981307 -58301182 - L2 LINE L2 -2 3270 3008 608 181 46 8 chr12 85981462 85981590 -58300899 - L1MC/D LINE L1 -418 5753 5624 352 320 169 44 chr12 85981806 85982172 -58300317 - L2 LINE L2 -10 3262 2851 23 0 0 0 chr12 85982575 85982598 -58299891 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr12 85982686 85982716 -58299773 + AT_rich Low_complexity Low_complexity 1 30 0 1177 181 122 0 chr12 85982854 85983092 -58299397 + Tigger4(Zombi) DNA MER2_type 1 267 -2464 2269 126 11 22 chr12 85983108 85983283 -58299206 + Tigger4(Zombi) DNA MER2_type 2372 2547 -184 2294 102 0 3 chr12 85983283 85983578 -58298911 + AluSg SINE Alu 1 294 -16 2269 126 11 22 chr12 85983578 85983766 -58298723 + Tigger4(Zombi) DNA MER2_type 2547 2731 0 1802 111 0 0 chr12 85984106 85984340 -58298149 + AluSx SINE Alu 61 294 -18 227 252 206 9 chr12 85985539 85985646 -58296843 - MIR SINE MIR -115 147 20 344 339 73 29 chr12 85985955 85986200 -58296289 + L1ME LINE L1 5457 5712 -409 183 156 0 0 chr12 85986235 85986267 -58296222 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 255 122 0 0 chr12 85986701 85986750 -58295739 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 1941 113 0 78 chr12 85986753 85987073 -58295416 - AluSx SINE Alu -17 295 1 23 54 0 0 chr12 85987542 85987579 -58294910 + AT_rich Low_complexity Low_complexity 1 37 0 1721 180 4 0 chr12 85987733 85988011 -58294478 + AluJo SINE Alu 4 282 -30 403 263 80 34 chr12 85989195 85989370 -58293119 + MIR SINE MIR 2 184 -78 2207 96 20 0 chr12 85989568 85989860 -58292629 + AluSc SINE Alu 1 298 -11 243 0 0 0 chr12 85989902 85989929 -58292560 + (TTG)n Simple_repeat Simple_repeat 1 27 0 240 94 0 0 chr12 85989935 85989967 -58292522 - Alu SINE Alu -16 286 255 998 110 20 0 chr12 85989967 85990113 -58292376 - AluSq/x SINE Alu -163 149 1 22 0 0 0 chr12 85990117 85990139 -58292350 + AT_rich Low_complexity Low_complexity 1 22 0 1856 118 30 4 chr12 85990313 85990584 -58291905 + AluSx SINE Alu 3 280 -32 225 0 0 0 chr12 85990584 85990609 -58291880 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1802 108 21 4 chr12 85991432 85991711 -58290778 + L1PA15 LINE L1 5867 6150 -15 308 328 81 51 chr12 85991869 85992204 -58290285 + L2 LINE L2 2600 2944 -370 1837 158 10 13 chr12 85992520 85992830 -58289659 + AluJo SINE Alu 2 310 -2 845 204 30 10 chr12 85993074 85993275 -58289214 - L1ME LINE L1 -619 5543 5339 1385 225 79 62 chr12 85993321 85993953 -58288536 - L1ME LINE L1 -1012 5134 4492 1301 175 129 6 chr12 85993994 85994320 -58288169 + Charlie1b DNA MER1_type 116 481 -42 590 197 116 0 chr12 85994371 85994518 -58287971 - L1MD2 LINE L1 -34 6325 6162 298 153 51 17 chr12 85994534 85994593 -58287896 + Charlie1b DNA MER1_type 463 523 0 759 342 59 33 chr12 85995834 85996226 -58286263 - L3 LINE CR1 -929 648 247 264 172 47 16 chr12 85997054 85997118 -58285371 - L1ME4a LINE L1 -101 6020 5955 2474 73 0 0 chr12 85997294 85997596 -58284893 + AluSc SINE Alu 1 302 -7 459 309 73 40 chr12 85998594 85998921 -58283568 + L2 LINE L2 2409 2746 -568 2135 98 28 3 chr12 85998924 85999210 -58283279 + AluSx SINE Alu 1 293 -19 472 286 20 140 chr12 85999228 85999365 -58283124 + L2 LINE L2 2923 3075 -197 2305 98 0 3 chr12 85999365 85999661 -58282828 + AluSg SINE Alu 1 295 -15 472 286 20 140 chr12 85999661 85999873 -58282616 + L2 LINE L2 3075 3230 -42 3423 146 80 28 chr12 85999977 86000598 -58281891 - L1MB7 LINE L1 -20 6164 5498 2278 161 31 17 chr12 86000598 86001020 -58281469 + MSTC LTR MaLR 1 428 0 3423 146 80 28 chr12 86001020 86001122 -58281367 - L1MB7 LINE L1 -686 5498 5403 287 318 64 18 chr12 86001130 86001240 -58281249 + L2 LINE L2 3154 3268 -4 214 291 171 26 chr12 86001713 86001830 -58280659 + L2 LINE L2 3180 3313 0 1498 181 3 43 chr12 86002060 86002352 -58280137 + AluJo SINE Alu 1 281 -31 191 28 28 56 chr12 86002352 86002388 -58280101 + (CAAAA)n Simple_repeat Simple_repeat 1 70 0 3115 75 19 2 chr12 86002517 86002943 -58279546 + L1PA8 LINE L1 5726 6158 -14 458 265 58 77 chr12 86003022 86003084 -58279405 + L1ME4a LINE L1 5634 5696 -425 2040 117 4 0 chr12 86003084 86003391 -58279098 + AluSx SINE Alu 1 308 0 458 265 58 77 chr12 86003391 86003640 -58278849 + L1ME4a LINE L1 5696 5940 -181 2345 84 0 13 chr12 86003852 86004162 -58278327 + AluSx SINE Alu 1 306 -6 1996 146 0 14 chr12 86004524 86004819 -58277670 - AluJo SINE Alu -20 292 2 313 308 71 19 chr12 86005080 86005291 -58277198 + MARNA DNA Mariner 275 496 -90 192 77 0 0 chr12 86005347 86005373 -58277116 + (TG)n Simple_repeat Simple_repeat 2 27 0 715 164 30 37 chr12 86006018 86006152 -58276337 - FLAM_C SINE Alu 0 133 1 2123 124 0 17 chr12 86006284 86006582 -58275907 - AluSx SINE Alu -19 293 1 21 36 0 0 chr12 86006763 86006791 -58275698 + AT_rich Low_complexity Low_complexity 1 28 0 1655 162 32 7 chr12 86007006 86007284 -58275205 + AluJo SINE Alu 1 285 -27 203 61 30 0 chr12 86007284 86007317 -58275172 + (CA)n Simple_repeat Simple_repeat 2 35 0 254 304 43 22 chr12 86007712 86007804 -58274685 + MIR SINE MIR 7 100 -162 1749 175 21 24 chr12 86009096 86009433 -58273056 - MER1B DNA MER1_type -1 336 1 2190 114 0 10 chr12 86009575 86009873 -58272616 + AluSx SINE Alu 1 295 -17 267 182 0 0 chr12 86010066 86010110 -58272379 - L2 LINE L2 -8 3264 3221 295 370 78 33 chr12 86010441 86010582 -58271907 - L2 LINE L2 -575 2739 2606 2242 98 3 0 chr12 86010582 86010889 -58271600 + AluSp SINE Alu 1 308 0 295 370 78 33 chr12 86010889 86011143 -58271346 - L2 LINE L2 -708 2606 2325 21 57 0 0 chr12 86011168 86011203 -58271286 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr12 86011407 86011443 -58271046 + AT_rich Low_complexity Low_complexity 1 36 0 214 208 0 42 chr12 86015054 86015102 -58267387 + G-rich Low_complexity Low_complexity 3 48 0 382 265 0 0 chr12 86016061 86016144 -58266345 - L2 LINE L2 -4 3268 3186 407 239 77 26 chr12 86016472 86016589 -58265900 - L2 LINE L2 -4 3309 3187 22 56 0 0 chr12 86017114 86017150 -58265339 + AT_rich Low_complexity Low_complexity 1 36 0 665 170 122 27 chr12 86017412 86017559 -58264930 + FRAM SINE Alu 2 162 -4 21 0 0 0 chr12 86017753 86017774 -58264715 + AT_rich Low_complexity Low_complexity 1 21 0 360 153 0 0 chr12 86017802 86017861 -58264628 - AluJo SINE Alu -9 293 235 1164 147 5 26 chr12 86017861 86018051 -58264438 - AluJo SINE Alu -126 186 1 2177 106 3 32 chr12 86018464 86018775 -58263714 + AluSx SINE Alu 1 302 -10 974 219 187 16 chr12 86019200 86019644 -58262845 + MER113 DNA MER1_type? 2 521 0 185 274 20 0 chr12 86020041 86020092 -58262397 + MIR SINE MIR 154 205 -57 186 343 14 0 chr12 86020747 86020817 -58261672 - L2 LINE L2 -2 3311 3241 251 316 41 0 chr12 86021134 86021232 -58261257 - MIR SINE MIR -2 260 159 284 286 34 56 chr12 86021397 86021575 -58260914 - MLT1I LTR MaLR -176 233 60 1105 223 35 53 chr12 86021575 86021951 -58260538 - MLT1A2 LTR MaLR 0 374 6 224 358 44 15 chr12 86022047 86022184 -58260305 - MIR SINE MIR -101 161 21 1298 111 5 48 chr12 86022436 86022644 -58259845 + AluY SINE Alu 103 301 -10 183 245 19 38 chr12 86022662 86022715 -58259774 + L2 LINE L2 3261 3312 -1 314 305 73 12 chr12 86022825 86022989 -58259500 + L1ME LINE L1 5258 5431 -733 1348 36 12 0 chr12 86023029 86023197 -58259292 - L1PA4 LINE L1 -2 6153 5984 2262 55 16 0 chr12 86023197 86023507 -58258982 + L1PA4 LINE L1 5678 5992 -163 12120 26 1 4 chr12 86023778 86026028 -58256461 + L1PA3 LINE L1 3875 6117 -38 776 273 43 23 chr12 86026550 86026806 -58255683 + MIR SINE MIR 2 262 0 193 320 263 6 chr12 86026886 86027042 -58255447 + MIR SINE MIR 54 249 -13 31 0 0 0 chr12 86027348 86027379 -58255110 + AT_rich Low_complexity Low_complexity 1 31 0 2072 132 6 3 chr12 86027389 86027700 -58254789 + AluSx SINE Alu 1 312 0 2739 200 52 46 chr12 86027820 86028469 -58254020 + MER82 DNA MER2_type 1 653 0 5025 95 24 4 chr12 86029662 86030908 -58251581 - L1PA7 LINE L1 -116 6038 4774 405 241 25 19 chr12 86031827 86031933 -58250556 + MER33 DNA MER1_type 1 98 -97 371 162 131 0 chr12 86031928 86032027 -58250462 + MER33 DNA MER1_type 252 363 0 * 21 0 0 0 chr12 86032309 86032330 -58250159 + AT_rich Low_complexity Low_complexity 1 21 0 981 248 13 13 chr12 86033433 86033667 -58248822 - MIR SINE MIR -26 236 3 231 250 0 56 chr12 86034422 86034494 -58247995 - L2 LINE L2 -4 3309 3242 25 0 0 0 chr12 86034502 86034527 -58247962 + AT_rich Low_complexity Low_complexity 1 25 0 428 243 71 21 chr12 86035757 86035897 -58246592 - MIR SINE MIR -22 240 94 302 361 25 8 chr12 86036458 86036577 -58245912 + MIR SINE MIR 34 154 -108 1094 274 47 79 chr12 86037167 86037659 -58244830 - L2 LINE L2 0 3313 2838 347 329 108 0 chr12 86037692 86037850 -58244639 - L2 LINE L2 -613 2701 2527 684 258 0 6 chr12 86037852 86038019 -58244470 - L2 LINE L2 -1363 1951 1786 1502 319 88 18 chr12 86038023 86038063 -58244426 - L2 LINE L2 -2564 750 714 1441 195 27 109 chr12 86038063 86038514 -58243975 - MLT2D LTR ERVL 0 414 1 1502 319 88 18 chr12 86038514 86038603 -58243886 - L2 LINE L2 -2600 714 633 2049 148 0 10 chr12 86038603 86038884 -58243605 + AluSx SINE Alu 1 280 -32 363 44 0 0 chr12 86038884 86038929 -58243560 + (GGGGA)n Simple_repeat Simple_repeat 5 49 0 2049 148 0 10 chr12 86038929 86038945 -58243544 + AluSx SINE Alu 280 295 -17 1502 319 88 18 chr12 86038945 86039481 -58243008 - L2 LINE L2 -2681 633 37 1411 190 78 3 chr12 86040218 86040502 -58241987 - AluJb SINE Alu -7 305 1 21 0 0 0 chr12 86041089 86041110 -58241379 + AT_rich Low_complexity Low_complexity 1 21 0 790 243 1 2 chr12 86042020 86042191 -58240298 - MER5A DNA MER1_type 0 189 10 433 341 8 53 chr12 86042269 86042515 -58239974 + MIR SINE MIR 28 262 0 41509 46 2 1 chr12 86044991 86051141 -58231348 + L1PA4 LINE L1 3 6155 0 211 0 0 81 chr12 86051258 86051295 -58231194 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 738 311 58 51 chr12 86052940 86053355 -58229134 - LTR16A LTR ERVL -32 418 1 209 260 29 77 chr12 86053793 86053897 -58228592 + MIR SINE MIR 164 262 0 291 358 100 21 chr12 86054383 86054573 -58227916 - L2 LINE L2 -19 3253 3049 290 343 155 20 chr12 86056541 86056838 -58225651 - L2 LINE L2 -574 2740 2404 25 0 0 0 chr12 86056893 86056918 -58225571 + AT_rich Low_complexity Low_complexity 1 25 0 273 290 23 23 chr12 86057457 86057588 -58224901 + LTR16C LTR ERVL 359 489 -2 10520 123 45 29 chr12 86057661 86060545 -58221944 + L1PA7 LINE L1 1 2966 -3495 17286 98 12 26 chr12 86060546 86063810 -58218679 + L1PA7 LINE L1 3085 6342 -127 2425 81 3 0 chr12 86063810 86064120 -58218369 + AluY SINE Alu 1 311 0 17286 98 12 26 chr12 86064120 86064243 -58218246 + L1PA7 LINE L1 6342 6465 -4 430 120 0 30 chr12 86064272 86064372 -58218117 + MER69 DNA AcHobo 2331 2427 -99 293 254 121 61 chr12 86064420 86064585 -58217904 + MLT1I LTR MaLR 7 181 -228 1358 282 140 21 chr12 86064763 86065226 -58217263 + L1MC4a LINE L1 6443 6850 -958 1076 133 0 6 chr12 86065226 86065407 -58217082 + (TA)n Simple_repeat Simple_repeat 1 180 0 1358 282 140 21 chr12 86065407 86065779 -58216710 + L1MC4a LINE L1 6850 7377 -431 23 54 0 0 chr12 86065844 86065881 -58216608 + AT_rich Low_complexity Low_complexity 1 37 0 5555 105 16 27 chr12 86066067 86066965 -58215524 - L1PA15 LINE L1 -4 6161 5274 251 114 0 0 chr12 86067006 86067050 -58215439 + MLT1D LTR MaLR 462 505 0 21 36 0 0 chr12 86067149 86067177 -58215312 + AT_rich Low_complexity Low_complexity 1 28 0 352 286 179 0 chr12 86068778 86068890 -58213599 + MIR3 SINE MIR 75 206 -2 2175 105 0 25 chr12 86069054 86069368 -58213121 - AluSp SINE Alu -7 306 1 433 207 24 0 chr12 86069754 86069836 -58212653 - MER5B DNA MER1_type -88 90 7 210 333 42 42 chr12 86069987 86070083 -58212406 + L2 LINE L2 3138 3233 -39 452 302 231 16 chr12 86070473 86070841 -58211648 - L2 LINE L2 -6 3307 2861 609 343 95 23 chr12 86071321 86071764 -58210725 - L2 LINE L2 -410 2904 2430 232 233 0 50 chr12 86071866 86071926 -58210563 - L2 LINE L2 -34 3238 3182 304 214 155 10 chr12 86071948 86072051 -58210438 - MIR SINE MIR -82 180 63 333 306 15 23 chr12 86072367 86072548 -58209941 + MIR SINE MIR 26 204 -58 630 167 0 21 chr12 86073701 86073845 -58208644 - L1MA4 LINE L1 -1 6299 6159 521 178 0 0 chr12 86073846 86073947 -58208542 + L1MA4 LINE L1 6053 6153 -147 26 0 0 0 chr12 86074397 86074423 -58208066 + AT_rich Low_complexity Low_complexity 1 26 0 254 315 82 54 chr12 86075524 86075914 -58206575 - L2 LINE L2 -668 2646 2246 655 159 53 0 chr12 86076858 86077028 -58205461 + CT-rich Low_complexity Low_complexity 1 179 0 1875 150 10 38 chr12 86077032 86077346 -58205143 - AluJo SINE Alu -7 305 1 676 221 111 16 chr12 86077943 86078133 -58204356 - L2 LINE L2 0 3313 3106 419 272 160 6 chr12 86078142 86078336 -58204153 - L2 LINE L2 -322 2991 2772 950 0 0 9 chr12 86079140 86079251 -58203238 + (AATAG)n Simple_repeat Simple_repeat 3 112 0 257 241 76 0 chr12 86079597 86079676 -58202813 + MER112 DNA MER1_type 18 102 -158 784 142 18 0 chr12 86080990 86081103 -58201386 + FLAM_C SINE Alu 1 115 -18 406 181 9 17 chr12 86081713 86081829 -58200660 + GA-rich Low_complexity Low_complexity 2 116 0 305 174 14 0 chr12 86082182 86082251 -58200238 + CT-rich Low_complexity Low_complexity 3 72 0 271 371 49 30 chr12 86082492 86082756 -58199733 - L2 LINE L2 -129 3143 2875 377 277 50 0 chr12 86083585 86083686 -58198803 - L2 LINE L2 -9 3304 3199 1133 241 0 0 chr12 86083696 86083920 -58198569 + MER58A DNA MER1_type 1 224 0 586 209 231 41 chr12 86083931 86084199 -58198290 - MER5C DNA MER1_type -4 320 2 215 264 30 132 chr12 86084307 86084474 -58198015 - L2 LINE L2 -243 3070 2921 2324 128 72 41 chr12 86084475 86085173 -58197316 + MER51A LTR ERV1 1 640 0 238 278 56 0 chr12 86085181 86085271 -58197218 - MIR SINE MIR -25 237 143 479 310 0 39 chr12 86085315 86085470 -58197019 - MIR SINE MIR -110 152 4 399 253 165 16 chr12 86085710 86085904 -58196585 - MLT1J LTR MaLR 0 511 289 1045 191 22 44 chr12 86085948 86086173 -58196316 + AluJo SINE Alu 1 220 -92 225 115 58 29 chr12 86086217 86086321 -58196168 + (TA)n Simple_repeat Simple_repeat 1 107 0 1031 172 0 0 chr12 86086324 86086481 -58196008 + AluJb SINE Alu 134 290 -22 314 253 44 11 chr12 86086484 86086575 -58195914 - MLT1B LTR MaLR -30 437 344 3225 140 18 45 chr12 86086575 86087832 -58194657 - LTR12 LTR ERV1 -26 1440 118 409 214 55 151 chr12 86087853 86088236 -58194253 - MLT1B LTR MaLR -121 346 1 341 269 21 0 chr12 86088370 86088463 -58194026 - MLT1J LTR MaLR -416 95 1 390 283 134 16 chr12 86088650 86088837 -58193652 + MIR SINE MIR 49 257 -5 217 240 20 0 chr12 86088850 86088900 -58193589 + GA-rich Low_complexity Low_complexity 4 54 0 6101 94 2 14 chr12 86089233 86090157 -58192332 - L1PA10 LINE L1 -2 6166 5254 1209 262 87 28 chr12 86090186 86090378 -58192111 + MLT1J LTR MaLR 7 186 -325 2124 133 3 3 chr12 86090378 86090687 -58191802 - AluSx SINE Alu -3 309 1 1209 262 87 28 chr12 86090687 86090963 -58191526 + MLT1J LTR MaLR 186 503 -8 345 217 38 89 chr12 86091671 86091828 -58190661 + Charlie2 DNA MER1_type 102 250 -2612 974 214 121 25 chr12 86091910 86092349 -58190140 + Charlie2 DNA MER1_type 2380 2860 -2 1366 124 0 0 chr12 86092360 86092546 -58189943 - AluSg/x SINE Alu 0 312 127 1487 316 50 31 chr12 86093797 86093901 -58188588 - MER115 DNA AcHobo -9 684 583 1817 114 9 76 chr12 86093901 86094216 -58188273 - AluSx SINE Alu -14 298 5 1487 316 50 31 chr12 86094216 86094732 -58187757 - MER115 DNA AcHobo -110 583 52 248 305 85 0 chr12 86094955 86095073 -58187416 - MIR SINE MIR -44 218 91 1746 186 3 3 chr12 86095265 86095555 -58186934 + AluJb SINE Alu 1 290 -22 282 116 0 0 chr12 86095938 86095981 -58186508 + (TATG)n Simple_repeat Simple_repeat 4 46 0 1745 157 46 32 chr12 86096016 86096386 -58186103 - THE1C LTR MaLR 0 375 1 9546 116 20 52 chr12 86096386 86096445 -58186044 - THE1C-int LTR MaLR 0 1580 1521 2234 52 0 80 chr12 86096445 86096772 -58185717 + AluY SINE Alu 1 301 -10 9546 116 20 52 chr12 86096772 86096844 -58185645 - THE1C-int LTR MaLR -59 1521 1448 2462 70 0 0 chr12 86096844 86097142 -58185347 + AluY SINE Alu 1 298 -13 9546 116 20 52 chr12 86097142 86098639 -58183850 - THE1C-int LTR MaLR -132 1448 4 1781 155 61 33 chr12 86098644 86099005 -58183484 - THE1C LTR MaLR -4 371 1 1826 165 26 26 chr12 86099005 86099386 -58183103 + MER65A LTR ERV1 65 445 0 475 256 10 49 chr12 86099386 86099589 -58182900 - L1MC5 LINE L1 -776 7185 6991 789 289 93 0 chr12 86099697 86099988 -58182501 - L1MC4 LINE L1 -1029 7013 6696 23 54 0 0 chr12 86100095 86100132 -58182357 + AT_rich Low_complexity Low_complexity 1 37 0 986 163 6 6 chr12 86100607 86100773 -58181716 - AluSg/x SINE Alu -8 302 137 3192 237 66 30 chr12 86101735 86103080 -58179409 - L1M4 LINE L1 -2576 4273 2881 * 7097 222 27 64 chr12 86103068 86103139 -58179350 - L1 LINE L1 -1952 4897 4825 1983 130 67 6 chr12 86103139 86103484 -58179005 - MER47A DNA MER2_type 0 366 1 7097 222 27 64 chr12 86103484 86103699 -58178790 - L1 LINE L1 -2024 4825 4604 2309 164 9 29 chr12 86103699 86104143 -58178346 - L1PB4 LINE L1 -1 6155 5721 7097 222 27 64 chr12 86104143 86104271 -58178218 - L1 LINE L1 -2245 4604 4473 1826 177 3 0 chr12 86104271 86104554 -58177935 - AluJb SINE Alu -28 284 1 7097 222 27 64 chr12 86104554 86104868 -58177621 - L1 LINE L1 -2376 4473 4149 1766 174 3 0 chr12 86104868 86105150 -58177339 - AluJb SINE Alu -27 285 3 7097 222 27 64 chr12 86105150 86107049 -58175440 - L1 LINE L1 -2700 4149 2400 1433 307 87 50 chr12 86107050 86108876 -58173613 - L1PA15-16 LINE L1 -4845 2005 53 558 0 0 0 chr12 86108878 86108940 -58173549 + (TTTCC)n Simple_repeat Simple_repeat 4 65 0 461 97 14 0 chr12 86108929 86109001 -58173488 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 * 523 264 2 13 chr12 86109001 86109164 -58173325 - L1PA15-16 LINE L1 -6679 171 6 187 53 26 26 chr12 86109171 86109209 -58173280 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 727 252 28 33 chr12 86109760 86109974 -58172515 + MLT1I LTR MaLR 6 218 -191 1624 183 103 0 chr12 86109999 86110300 -58172189 - MER58B DNA MER1_type -8 333 2 2228 146 10 45 chr12 86112895 86113299 -58169190 + MLT1B LTR MaLR 1 390 0 3761 139 143 44 chr12 86115004 86115838 -58166651 - L1MA9 LINE L1 -5 6195 5280 10942 230 57 40 chr12 86115838 86116672 -58165817 - L1MA9 LINE L1 -1356 4678 3860 1828 212 17 3 chr12 86116672 86117031 -58165458 - MLT1A1 LTR MaLR 0 365 2 10942 230 57 40 chr12 86117031 86118135 -58164354 - L1MA9 LINE L1 -2174 3860 2777 1356 163 9 4 chr12 86118135 86118368 -58164121 + MER46A DNA MER2_type 2 235 -1 10942 230 57 40 chr12 86118368 86121737 -58160752 - L1MA9 LINE L1 -3257 2777 11 701 292 69 17 chr12 86122530 86122763 -58159726 + MIR SINE MIR 4 248 -14 346 209 231 0 chr12 86124041 86124132 -58158357 - L2 LINE L2 -5 3308 3197 264 366 46 36 chr12 86124570 86124764 -58157725 + MIR SINE MIR 29 224 -38 251 225 42 14 chr12 86124997 86125068 -58157421 - MLT1K LTR MaLR -5 583 511 213 239 0 0 chr12 86125157 86125203 -58157286 + T-rich Low_complexity Low_complexity 4 49 0 201 152 0 0 chr12 86125653 86125686 -58156803 + (TG)n Simple_repeat Simple_repeat 2 34 0 333 0 0 0 chr12 86125904 86125941 -58156548 + (TG)n Simple_repeat Simple_repeat 1 37 0 194 270 0 0 chr12 86128027 86128064 -58154425 - L2 LINE L2 -14 3299 3263 * 618 273 102 14 chr12 86128032 86128248 -58154241 - MIR SINE MIR -13 249 15 201 337 48 0 chr12 86128498 86128581 -58153908 + L2 LINE L2 3227 3313 0 970 235 26 17 chr12 86128694 86128924 -58153565 - MIR SINE MIR 0 262 31 319 153 24 82 chr12 86129142 86129227 -58153262 - MADE1 DNA Mariner 0 80 1 * 1574 206 47 9 chr12 86129227 86129545 -58152944 - MLT1A1 LTR MaLR -31 334 5 938 253 98 26 chr12 86129699 86130087 -58152402 - L1MC4a LINE L1 -1982 5826 5411 1466 132 5 9 chr12 86130206 86130426 -58152063 - AluJb SINE Alu -93 219 1 478 340 36 11 chr12 86130741 86131100 -58151389 - L1MC4a LINE L1 -1314 4832 4465 1082 228 52 0 chr12 86131114 86131364 -58151125 + L1PB4 LINE L1 5892 6154 -2 591 35 35 0 chr12 86131593 86131679 -58150810 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 2039 104 3 37 chr12 86133200 86133499 -58148990 + AluSc SINE Alu 3 291 -18 189 0 0 0 chr12 86134099 86134120 -58148369 + (T)n Simple_repeat Simple_repeat 1 21 0 374 322 64 39 chr12 86134240 86134523 -58147966 + MLT1K LTR MaLR 141 430 -158 315 313 27 34 chr12 86134840 86134961 -58147528 + MIR SINE MIR 57 176 -86 437 240 19 71 chr12 86134961 86135115 -58147374 + MIR SINE MIR 3 148 -114 1512 217 71 17 chr12 86135118 86135468 -58147021 + MLT1A2 LTR MaLR 6 374 0 226 267 17 0 chr12 86135471 86135531 -58146958 + MIR SINE MIR 148 208 -54 978 261 88 8 chr12 86135875 86136124 -58146365 - LTR40a LTR ERVL 0 519 251 1315 177 41 0 chr12 86136135 86136401 -58146088 - Charlie1a DNA MER1_type -456 999 723 2207 212 23 13 chr12 86136455 86136927 -58145562 - Charlie1a DNA MER1_type -978 477 1 1717 176 7 3 chr12 86137029 86137319 -58145170 - MLT1A1 LTR MaLR 0 365 75 430 192 0 0 chr12 86137455 86137533 -58144956 - MLT1A1 LTR MaLR -279 86 9 723 200 67 0 chr12 86137736 86137886 -58144603 + MIR SINE MIR 77 236 -26 255 318 113 10 chr12 86137922 86138117 -58144372 - L2 LINE L2 -1092 2222 2008 515 302 0 0 chr12 86138142 86138258 -58144231 + L2 LINE L2 3152 3267 -5 2118 90 36 0 chr12 86138387 86138546 -58143943 - AluSp SINE Alu -26 287 112 423 0 0 0 chr12 86138546 86138593 -58143896 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 2118 90 36 0 chr12 86138593 86138710 -58143779 - AluSp SINE Alu -201 112 1 386 299 82 38 chr12 86139380 86139757 -58142732 - L1MC4a LINE L1 -1710 4436 4036 763 252 73 5 chr12 86139798 86140004 -58142485 + MIR SINE MIR 13 232 -30 5338 181 29 28 chr12 86140154 86142215 -58140274 + L1MB7 LINE L1 4103 6162 -22 303 250 9 65 chr12 86142225 86142333 -58140156 - L1MC4a LINE L1 -2370 3776 3675 1840 257 103 23 chr12 86142342 86142911 -58139578 + L2 LINE L2 1472 1994 -1320 1646 219 85 76 chr12 86142911 86143559 -58138930 - MLT1E1 LTR MaLR 0 654 1 1840 257 103 23 chr12 86143559 86143584 -58138905 + L2 LINE L2 1994 2016 -1298 2041 93 19 0 chr12 86143584 86143854 -58138635 + AluSq SINE Alu 23 297 -16 1840 257 103 23 chr12 86143854 86143900 -58138589 + L2 LINE L2 2016 2164 -1150 467 250 174 18 chr12 86144085 86144309 -58138180 + LTR33 LTR ERVL 236 494 -27 716 258 77 45 chr12 86144322 86144609 -58137880 + L2 LINE L2 2163 2458 -856 812 200 19 0 chr12 86144613 86144768 -58137721 + FAM SINE Alu 1 158 -17 5734 137 29 36 chr12 86144795 86145308 -58137181 - L1MA4A LINE L1 -5 6298 5783 186 43 0 0 chr12 86145308 86145331 -58137158 + (TG)n Simple_repeat Simple_repeat 2 24 0 5734 137 29 36 chr12 86145331 86146100 -58136389 - L1MA4A LINE L1 -520 5783 5024 1698 277 47 32 chr12 86146116 86146977 -58135512 + L2 LINE L2 2445 3311 -2 565 292 38 5 chr12 86147452 86147661 -58134828 + Charlie8 DNA MER1_type 50 265 -2152 273 228 0 0 chr12 86147693 86147750 -58134739 + Charlie8 DNA MER1_type 1371 1427 -990 1180 36 0 0 chr12 86148370 86148510 -58133979 + AluY SINE Alu 163 302 -9 323 157 61 15 chr12 86149953 86150028 -58132461 + MER5A DNA MER1_type 21 103 -80 1505 325 59 41 chr12 86150144 86151204 -58131285 + L2 LINE L2 1011 2090 -1224 416 305 54 54 chr12 86151419 86151642 -58130847 - LTR16A LTR ERVL -214 236 14 485 279 43 0 chr12 86151687 86151827 -58130662 + L2 LINE L2 2199 2344 -970 560 333 96 49 chr12 86151827 86152622 -58129867 + L2 LINE L2 2487 3312 -1 538 309 112 54 chr12 86153941 86154495 -58127994 - L2 LINE L2 -4 3309 2727 1056 284 84 52 chr12 86155070 86155535 -58126954 + MLT1K LTR MaLR 83 562 -26 3313 128 37 20 chr12 86155781 86156374 -58126115 - L1MA8 LINE L1 -5 6286 5684 258 383 58 24 chr12 86156445 86156740 -58125749 + L2 LINE L2 1334 1638 -1676 308 306 106 0 chr12 86156749 86156909 -58125580 + L2 LINE L2 1805 1981 -1333 640 261 144 0 chr12 86157056 86157251 -58125238 - MIR SINE MIR 0 262 40 736 280 121 19 chr12 86157262 86157790 -58124699 - L1ME3A LINE L1 -3 6161 5561 22 35 0 0 chr12 86159447 86159476 -58123013 + AT_rich Low_complexity Low_complexity 1 29 0 538 192 10 177 chr12 86159672 86159875 -58122614 - MIR SINE MIR -35 227 59 308 202 28 73 chr12 86159896 86160005 -58122484 + MIR SINE MIR 159 262 0 210 250 0 0 chr12 86160390 86160438 -58122051 + A-rich Low_complexity Low_complexity 2 49 0 924 186 28 0 chr12 86161619 86161796 -58120693 - MIR SINE MIR -8 254 73 23 33 0 0 chr12 86161797 86161827 -58120662 + AT_rich Low_complexity Low_complexity 1 30 0 228 286 57 0 chr12 86161830 86161900 -58120589 - L2 LINE L2 -15 3298 3225 199 259 19 0 chr12 86161917 86161971 -58120518 - L2 LINE L2 -232 3081 3027 912 297 110 8 chr12 86162130 86162602 -58119887 + LTR33 LTR ERVL 2 521 0 314 89 0 0 chr12 86162734 86162779 -58119710 - U7 snRNA snRNA -15 48 4 852 242 38 50 chr12 86163189 86163429 -58119060 + MIR SINE MIR 2 238 -24 637 184 7 34 chr12 86164426 86164573 -58117916 - FLAM_C SINE Alu 0 143 1 1948 138 10 16 chr12 86164632 86164944 -58117545 + AluJb SINE Alu 3 312 0 1063 144 12 12 chr12 86165346 86165519 -58116970 + AluJb SINE Alu 139 311 -1 488 324 111 19 chr12 86165592 86165808 -58116681 - MIR SINE MIR -1 261 26 348 217 57 9 chr12 86166071 86166166 -58116323 - L1M4 LINE L1 -2090 4056 3954 12220 96 7 1 chr12 86166166 86168692 -58113797 - L1PA7 LINE L1 0 6154 3606 41856 38 25 4 chr12 86168693 86174717 -58107772 - L1PA3 LINE L1 0 6155 5 206 292 162 52 chr12 86175980 86176134 -58106355 + L2 LINE L2 3035 3205 -108 27 0 0 0 chr12 86176138 86176165 -58106324 + AT_rich Low_complexity Low_complexity 1 27 0 230 329 14 0 chr12 86176585 86176655 -58105834 - MIR SINE MIR -99 163 93 1903 128 19 39 chr12 86177323 86177635 -58104854 - AluSx SINE Alu -6 306 1 478 94 0 94 chr12 86177646 86177742 -58104747 - L1MC1 LINE L1 0 6333 6247 1919 176 20 15 chr12 86177744 86178097 -58104392 - MLT1A1 LTR MaLR -4 361 2 2980 111 2 11 chr12 86178099 86178548 -58103941 - L1MC1 LINE L1 -82 6251 5807 2186 108 0 0 chr12 86178667 86178946 -58103543 + AluSx SINE Alu 1 279 -33 1030 204 51 44 chr12 86179004 86179278 -58103211 + MER93b LTR ERV1 98 373 0 3607 145 25 8 chr12 86179279 86180106 -58102383 - L1MC/D LINE L1 -522 5811 4977 7258 109 17 21 chr12 86180108 86180654 -58101835 - L1MA2 LINE L1 0 6304 5757 3513 80 2 2 chr12 86180654 86181107 -58101382 + MLT2A2 LTR ERVL 1 453 0 7258 109 17 21 chr12 86181107 86181129 -58101360 - L1MA2 LINE L1 -547 5757 5736 1985 138 48 28 chr12 86181129 86181484 -58101005 + THE1B LTR MaLR 1 362 -2 7258 109 17 21 chr12 86181484 86182433 -58100056 - L1MA2 LINE L1 -568 5736 4787 491 242 102 6 chr12 86182439 86182596 -58099893 + LTR33A LTR ERVL 349 520 -3 905 258 35 72 chr12 86182725 86183070 -58099419 + MER46C DNA MER2_type 1 332 -6 236 154 19 0 chr12 86183178 86183230 -58099259 + (TA)n Simple_repeat Simple_repeat 1 53 0 4507 204 6 1 chr12 86183230 86184169 -58098320 - L1PB1 LINE L1 -1751 4395 3452 * 6328 146 16 1 chr12 86184166 86185881 -58096608 + L1PB1 LINE L1 4416 6151 0 282 302 121 20 chr12 86186216 86186365 -58096124 - L2 LINE L2 -786 2528 2365 1517 171 17 99 chr12 86187075 86187478 -58095011 - MLT1B LTR MaLR 0 390 21 23 78 0 0 chr12 86187756 86187807 -58094682 + AT_rich Low_complexity Low_complexity 1 51 0 226 313 112 30 chr12 86188015 86188149 -58094340 - MIR3 SINE MIR -7 201 57 496 310 204 43 chr12 86188237 86188634 -58093855 - MLT1H LTR MaLR -88 461 1 241 318 182 0 chr12 86188716 86188826 -58093663 + MIR SINE MIR 57 186 -76 759 271 33 4 chr12 86188969 86189242 -58093247 - L1M4 LINE L1 -2579 3567 3287 302 352 40 11 chr12 86189247 86189423 -58093066 - L1MC4 LINE L1 -987 7055 6875 649 110 0 0 chr12 86189423 86189514 -58092975 - MSTA LTR MaLR 0 428 338 1626 229 104 12 chr12 86190164 86190596 -58091893 + LTR33 LTR ERVL 50 521 0 284 185 0 15 chr12 86190809 86190874 -58091615 + CT-rich Low_complexity Low_complexity 1 64 0 180 298 166 33 chr12 86191209 86191360 -58091129 - MIR SINE MIR -91 171 1 570 176 121 30 chr12 86191642 86191807 -58090682 + MER96B DNA MER1_type? 238 417 0 28 71 0 0 chr12 86192183 86192239 -58090250 + AT_rich Low_complexity Low_complexity 1 56 0 485 155 0 21 chr12 86192549 86192646 -58089843 + CT-rich Low_complexity Low_complexity 4 98 0 1444 145 26 4 chr12 86192650 86192878 -58089611 - AluJb SINE Alu -59 253 21 205 196 22 0 chr12 86193539 86193585 -58088904 + CT-rich Low_complexity Low_complexity 2 48 0 3154 225 63 28 chr12 86194173 86194819 -58087670 - L1ME1 LINE L1 -18 6148 5526 612 73 0 0 chr12 86194819 86194901 -58087588 + (TG)n Simple_repeat Simple_repeat 2 83 0 3154 225 63 28 chr12 86194901 86195064 -58087425 - L1ME1 LINE L1 -640 5526 5370 2288 113 0 0 chr12 86195064 86195374 -58087115 - AluSx SINE Alu -2 310 1 3154 225 63 28 chr12 86195374 86195727 -58086762 - L1ME1 LINE L1 -796 5370 5031 1739 151 7 24 chr12 86195727 86196018 -58086471 - AluJo SINE Alu -24 288 3 3154 225 63 28 chr12 86196018 86196461 -58086028 - L1ME1 LINE L1 -1135 5031 4488 884 221 102 22 chr12 86196431 86196753 -58085736 - L1M4 LINE L1 -2905 3241 2894 * 211 307 193 40 chr12 86196796 86196946 -58085543 + L2 LINE L2 2918 3090 -182 201 246 0 16 chr12 86197213 86197274 -58085215 + T-rich Low_complexity Low_complexity 5 64 0 2564 68 24 117 chr12 86197295 86197748 -58084741 + L1PA11 LINE L1 5763 6173 -1 3525 130 2 11 chr12 86197826 86198380 -58084109 - MER41B LTR ERV1 -86 549 1 5298 100 5 8 chr12 86198384 86199154 -58083335 - MER41B-int LTR ERV1 -11 5935 5168 902 56 28 7 chr12 86199152 86199294 -58083195 + MER41-int LTR ERV1 3393 3537 -2409 * 2471 214 163 20 chr12 86200880 86202445 -58080044 - L1ME1 LINE L1 -4 6231 4497 1699 231 71 100 chr12 86202443 86202694 -58079795 - L1ME1 LINE L1 -5699 697 440 * 2368 98 13 0 chr12 86202694 86203001 -58079488 - AluSx SINE Alu -1 311 1 1699 231 71 100 chr12 86203001 86203429 -58079060 - L1ME1 LINE L1 -5956 440 38 1357 219 22 19 chr12 86203623 86203938 -58078551 - LTR52 LTR ERVL -105 316 1 2412 233 65 79 chr12 86203940 86204811 -58077678 - LTR52-int LTR ERVL -2 3554 2469 410 234 0 0 chr12 86204814 86204891 -58077598 - LTR52-int LTR ERVL -3140 2545 2469 * 1772 250 69 29 chr12 86204881 86205383 -58077106 - LTR52-int LTR ERVL -837 3090 1652 352 267 30 0 chr12 86205473 86205574 -58076915 - LTR52-int LTR ERVL -1488 2068 1965 1234 247 88 61 chr12 86205578 86205972 -58076517 - LTR52-int LTR ERVL -2210 1346 964 207 0 0 0 chr12 86205972 86205995 -58076494 + (TC)n Simple_repeat Simple_repeat 2 24 0 1234 247 88 61 chr12 86205995 86206511 -58075978 - LTR52-int LTR ERVL -2592 964 410 1630 168 55 11 chr12 86206522 86206796 -58075693 + AluJb SINE Alu 1 286 -26 841 164 142 0 chr12 86206837 86207020 -58075469 - LTR52-int LTR ERVL -3281 275 67 205 314 88 62 chr12 86207233 86207427 -58075062 - L2 LINE L2 -214 3058 2860 381 269 29 19 chr12 86207569 86207673 -58074816 - MER91B DNA MER1_type 0 190 86 207 208 125 133 chr12 86207686 86207806 -58074683 - MER91B DNA MER1_type -62 128 10 182 367 0 0 chr12 86207820 86207869 -58074620 - L2 LINE L2 -674 2640 2592 195 100 0 0 chr12 86207887 86207917 -58074572 + (TC)n Simple_repeat Simple_repeat 1 30 0 396 329 84 31 chr12 86208095 86208320 -58074169 - L2 LINE L2 -902 2412 2176 331 321 97 36 chr12 86208481 86208646 -58073843 + MER5A DNA MER1_type 2 176 -13 578 284 64 40 chr12 86209849 86209931 -58072558 + MIR SINE MIR 3 82 -180 2107 124 0 20 chr12 86209931 86210229 -58072260 - AluSx SINE Alu -20 292 1 578 284 64 40 chr12 86210229 86210396 -58072093 + MIR SINE MIR 82 258 -4 338 349 95 52 chr12 86210793 86211289 -58071200 + L2 LINE L2 2340 2856 -458 2397 75 0 0 chr12 86212906 86213188 -58069301 + AluSg SINE Alu 9 290 -20 31 0 0 0 chr12 86213188 86213219 -58069270 + AT_rich Low_complexity Low_complexity 1 31 0 209 272 71 20 chr12 86213828 86213951 -58068538 - MIR SINE MIR -65 143 12 249 237 263 35 chr12 86214259 86214373 -58068116 - MER5B DNA MER1_type -37 141 2 2686 45 0 0 chr12 86215146 86215457 -58067032 + AluY SINE Alu 1 311 0 2200 109 16 0 chr12 86215745 86216048 -58066441 + AluSx SINE Alu 1 308 -4 317 301 10 39 chr12 86216312 86216415 -58066074 + MIR SINE MIR 16 115 -93 2102 131 0 0 chr12 86217825 86218133 -58064356 + AluSg SINE Alu 1 308 0 276 284 49 0 chr12 86218449 86218530 -58063959 - MIR3 SINE MIR -16 192 108 343 256 16 48 chr12 86218854 86218979 -58063510 + LTR67 LTR ERVL 429 549 -8 27 0 0 0 chr12 86219350 86219377 -58063112 + AT_rich Low_complexity Low_complexity 1 27 0 688 271 24 10 chr12 86220296 86220503 -58061986 - MER63A DNA MER1_type 0 210 1 3067 119 8 12 chr12 86221407 86221910 -58060579 + MER4B LTR ERV1 37 537 -73 1181 105 105 0 chr12 86221927 86222098 -58060391 - AluSq SINE Alu -124 189 1 268 160 0 0 chr12 86222098 86222148 -58060341 + MER4D LTR ERV1 854 903 0 12994 29 3 4 chr12 86222410 86224732 -58057757 + L1PA3 LINE L1 3835 6155 0 483 280 71 17 chr12 86225452 86225691 -58056798 - MER46C DNA MER2_type 0 338 87 550 312 80 81 chr12 86225869 86226561 -58055928 + L2 LINE L2 2379 3059 -213 26 0 0 0 chr12 86226840 86226866 -58055623 + AT_rich Low_complexity Low_complexity 1 26 0 185 223 0 170 chr12 86227114 86227208 -58055281 + L2 LINE L2 194 271 -3043 1943 176 65 8 chr12 86228402 86228799 -58053690 - MSTB LTR MaLR 0 426 7 2407 80 0 13 chr12 86229457 86229769 -58052720 - AluSx SINE Alu -4 308 1 293 46 0 11 chr12 86229935 86229986 -58052503 - MLT2B2 LTR ERVL -2 513 477 1048 196 67 12 chr12 86230291 86230692 -58051797 - MLT1D LTR MaLR 0 505 21 339 323 31 55 chr12 86231013 86231140 -58051349 + MER5A DNA MER1_type 64 187 -2 710 278 121 12 chr12 86231995 86232243 -58050246 + L1MEd LINE L1 499 773 -5346 1741 148 44 37 chr12 86233707 86234005 -58048484 - AluJb SINE Alu -12 300 1 2255 94 0 10 chr12 86234402 86234701 -58047788 - AluSp SINE Alu -17 296 1 27 62 0 0 chr12 86237214 86237262 -58045227 + AT_rich Low_complexity Low_complexity 1 48 0 274 280 198 19 chr12 86237652 86237809 -58044680 - MIR3 SINE MIR -11 197 13 22 56 0 0 chr12 86238583 86238619 -58043870 + AT_rich Low_complexity Low_complexity 1 36 0 3759 134 30 21 chr12 86240120 86240748 -58041741 - MER41B LTR ERV1 0 635 2 384 325 56 25 chr12 86241370 86241567 -58040922 - LTR16C LTR ERVL -13 478 276 2176 103 7 3 chr12 86242363 86242663 -58039826 - AluSq SINE Alu -12 301 1 442 286 93 0 chr12 86242674 86242814 -58039675 - MIR SINE MIR -21 241 89 696 165 8 8 chr12 86243234 86243355 -58039134 + FLAM_A SINE Alu 5 125 -8 666 249 72 41 chr12 86243787 86244008 -58038481 - MIR SINE MIR -32 230 3 1020 38 0 8 chr12 86244026 86244157 -58038332 + L1PA4 LINE L1 6026 6155 0 182 254 164 0 chr12 86244557 86244612 -58037877 - MIR SINE MIR -106 102 39 1291 98 12 0 chr12 86245982 86246155 -58036334 - AluSg/x SINE Alu -1 311 137 2087 126 0 0 chr12 86246308 86246594 -58035895 - AluSx SINE Alu -11 301 16 1978 146 3 0 chr12 86247438 86247725 -58034764 - AluSx SINE Alu -24 288 1 197 238 48 76 chr12 86247867 86247972 -58034517 + L2 LINE L2 3209 3310 -3 * 487 244 90 60 chr12 86247952 86248153 -58034336 - L2 LINE L2 0 3313 3107 1944 138 10 17 chr12 86248535 86248832 -58033657 - AluSx SINE Alu -12 300 6 5357 97 22 17 chr12 86250174 86251129 -58031360 - L1PB1 LINE L1 0 6151 5224 27 0 0 0 chr12 86251514 86251541 -58030948 + AT_rich Low_complexity Low_complexity 1 27 0 283 267 34 55 chr12 86251991 86252137 -58030352 - MER45C DNA AcHobo -101 852 710 848 207 77 14 chr12 86252235 86252443 -58030046 - MER45C DNA AcHobo -690 263 43 487 319 26 39 chr12 86252517 86252746 -58029743 - L2 LINE L2 -251 3062 2837 4263 175 3 6 chr12 86252860 86253724 -58028765 - L1 LINE L1 -743 5403 4542 770 220 50 6 chr12 86254090 86254249 -58028240 - FRAM SINE Alu 0 166 1 225 269 226 0 chr12 86254310 86254403 -58028086 - L2 LINE L2 0 3272 3159 12537 130 22 4 chr12 86254708 86256759 -58025730 - Tigger1 DNA MER2_type -329 2089 1 435 290 207 0 chr12 86257801 86257946 -58024543 + MER5A DNA MER1_type 9 183 -6 270 308 75 19 chr12 86258829 86258936 -58023553 + MIR SINE MIR 13 125 -137 423 0 0 0 chr12 86258947 86258994 -58023495 + (TG)n Simple_repeat Simple_repeat 2 48 0 406 322 86 27 chr12 86260187 86260392 -58022097 - MIR SINE MIR -41 221 6 1500 162 38 29 chr12 86260821 86261167 -58021322 + L1MA8 LINE L1 5922 6270 -21 23 33 0 0 chr12 86261179 86261209 -58021280 + AT_rich Low_complexity Low_complexity 1 30 0 30 69 0 0 chr12 86261232 86261290 -58021199 + AT_rich Low_complexity Low_complexity 1 58 0 29 21 0 21 chr12 86261422 86261457 -58021032 + AT_rich Low_complexity Low_complexity 1 36 -10 3424 72 41 0 chr12 86261457 86261916 -58020573 - L1PA8 LINE L1 -8 6164 5687 29 21 0 21 chr12 86261916 86261927 -58020562 + AT_rich Low_complexity Low_complexity 36 46 0 184 354 73 0 chr12 86262118 86262200 -58020289 + L2 LINE L2 3155 3242 -30 203 61 30 0 chr12 86262311 86262344 -58020145 + (TA)n Simple_repeat Simple_repeat 1 34 0 1588 203 14 0 chr12 86262801 86263087 -58019402 - AluJo SINE Alu -22 290 1 191 337 75 78 chr12 86263804 86264059 -58018430 - L2 LINE L2 -645 2669 2416 564 263 103 53 chr12 86264188 86264431 -58018058 + MIR SINE MIR 8 262 0 210 217 22 0 chr12 86264848 86264894 -58017595 + (TA)n Simple_repeat Simple_repeat 2 48 0 2093 30 0 27 chr12 86264982 86265244 -58017245 + L1PA5 LINE L1 5894 6148 -6 254 350 8 17 chr12 86266488 86266608 -58015881 - L2 LINE L2 -1155 2159 2041 262 277 36 43 chr12 86267812 86268058 -58014431 - L1ME LINE L1 -359 5811 5492 2842 186 19 34 chr12 86268649 86269114 -58013375 - MER4D LTR ERV1 0 903 447 1870 102 84 4 chr12 86269114 86269389 -58013100 + AluSc SINE Alu 1 297 -12 2842 186 19 34 chr12 86269389 86269515 -58012974 - MER4D LTR ERV1 -456 447 321 605 189 8 33 chr12 86269619 86269741 -58012748 + Tigger1 DNA MER2_type 2299 2417 -1 391 240 16 41 chr12 86269989 86270110 -58012379 + MIR SINE MIR 145 262 0 195 333 126 9 chr12 86270443 86270554 -58011935 - L2 LINE L2 -2 3270 3147 23 78 0 0 chr12 86270691 86270742 -58011747 + AT_rich Low_complexity Low_complexity 1 51 0 100 95 0 0 chr12 86270785 86271081 -58011408 + AT_rich Low_complexity Low_complexity 1 296 0 40 49 0 0 chr12 86271138 86271199 -58011290 + AT_rich Low_complexity Low_complexity 1 61 0 24584 41 42 2 chr12 86272913 86276016 -58006473 - L1P LINE L1 -2913 3233 8 521 68 0 14 chr12 86276902 86276976 -58005513 + L1P3 LINE L1 5734 5806 -348 204 40 0 0 chr12 86277616 86277641 -58004848 + (GA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr12 86277983 86278008 -58004481 + AT_rich Low_complexity Low_complexity 1 25 0 1930 163 24 22 chr12 86278463 86278873 -58003616 - L1MB7 LINE L1 0 6184 5774 1626 180 10 86 chr12 86278911 86279328 -58003161 + L1M4 LINE L1 5361 5745 -439 1034 265 4 0 chr12 86280075 86280313 -58002176 - MIR SINE MIR -21 241 3 23 0 0 0 chr12 86283833 86283856 -57998633 + AT_rich Low_complexity Low_complexity 1 23 0 188 304 14 14 chr12 86284527 86284596 -57997893 - MIR3 SINE MIR -6 202 134 15238 131 13 33 chr12 86285369 86288942 -57993547 - L1P3 LINE L1 -2882 3579 7 290 258 0 0 chr12 86288946 86289022 -57993467 - MER5A DNA MER1_type -110 79 4 4581 144 30 9 chr12 86289750 86290550 -57991939 - LTR49-int LTR ERV1 -674 5657 4841 510 121 0 0 chr12 86290569 86290652 -57991837 - AluSp/q SINE Alu 0 313 231 3912 224 18 2 chr12 86290791 86291751 -57990738 - L1 LINE L1 -884 5262 4288 1454 85 0 27 chr12 86291800 86292024 -57990465 + L1MA1 LINE L1 6085 6302 0 257 170 0 0 chr12 86292453 86292506 -57989983 - L1ME4a LINE L1 -9 6112 6060 1323 278 82 32 chr12 86292869 86293147 -57989342 - HAL1 LINE L1 0 2507 2244 414 0 0 0 chr12 86293147 86293193 -57989296 + (CA)n Simple_repeat Simple_repeat 2 47 0 1323 278 82 32 chr12 86293193 86293636 -57988853 - HAL1 LINE L1 -263 2244 1750 320 286 20 10 chr12 86293630 86293728 -57988761 - HAL1 LINE L1 -1639 868 770 * 1062 272 66 43 chr12 86293898 86294644 -57987845 - HAL1 LINE L1 -1012 1495 636 1155 266 43 40 chr12 86294673 86295072 -57987417 + L2 LINE L2 2904 3303 -10 34 24 0 0 chr12 86295327 86295368 -57987121 + AT_rich Low_complexity Low_complexity 1 41 0 237 329 75 20 chr12 86296016 86296152 -57986337 - MIR3 SINE MIR -48 160 17 403 101 87 0 chr12 86296152 86296221 -57986268 + MER5C DNA MER1_type 2 76 -248 180 111 0 0 chr12 86296499 86296526 -57985963 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 210 111 44 0 chr12 86297685 86297730 -57984759 + T-rich Low_complexity Low_complexity 2 48 0 183 129 0 0 chr12 86298347 86298378 -57984111 + (T)n Simple_repeat Simple_repeat 1 31 0 564 238 49 7 chr12 86298639 86298782 -57983707 - MER104 DNA Tc2 -16 164 16 211 242 11 11 chr12 86299550 86299645 -57982844 + CT-rich Low_complexity Low_complexity 1 95 0 266 49 0 24 chr12 86299840 86299881 -57982608 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 188 235 25 206 chr12 86300021 86300259 -57982230 - L2 LINE L2 -125 3147 2953 315 272 58 10 chr12 86300406 86300509 -57981980 - MER94 DNA DNA -26 108 1 258 164 66 0 chr12 86300551 86300612 -57981877 + MER116 DNA Mariner 13 77 -3 187 195 8 57 chr12 86300804 86300927 -57981562 + G-rich Low_complexity Low_complexity 3 119 0 663 237 57 26 chr12 86301051 86301290 -57981199 - MER58A DNA MER1_type 0 224 3 386 334 35 69 chr12 86301291 86301713 -57980776 + L1MEd LINE L1 373 780 -5339 251 256 12 49 chr12 86302808 86302890 -57979599 + L2 LINE L2 3190 3268 -4 195 296 74 12 chr12 86304149 86304230 -57978259 - MIR3 SINE MIR -49 159 74 274 221 58 0 chr12 86304508 86304594 -57977895 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 297 292 130 16 chr12 86305506 86305691 -57976798 - MIR SINE MIR -1 261 56 225 125 16 156 chr12 86305996 86306060 -57976429 - L2 LINE L2 0 3313 3259 215 250 43 0 chr12 86306271 86306363 -57976126 + (GGGTG)n Simple_repeat Simple_repeat 4 99 0 12636 90 5 2 chr12 86306389 86309131 -57973358 + L1PA8 LINE L1 3427 6171 -1 249 261 31 15 chr12 86309167 86309232 -57973257 + MER5A DNA MER1_type 124 189 0 220 303 9 64 chr12 86309816 86309925 -57972564 - L2 LINE L2 -1034 2280 2178 273 264 58 66 chr12 86309966 86310087 -57972402 - L2 LINE L2 -9 3263 3144 589 245 75 0 chr12 86311102 86311261 -57971228 - MIR SINE MIR 0 262 92 4571 201 4 4 chr12 86311300 86312240 -57970249 + L1P LINE L1 3658 4597 -1549 275 116 0 0 chr12 86312232 86312275 -57970214 + L1 LINE L1 4685 4727 -1419 * 1250 99 6 0 chr12 86312377 86312538 -57969951 - AluSp SINE Alu -150 163 2 5725 154 37 20 chr12 86312538 86313663 -57968826 - LTR49-int LTR ERV1 -1477 4854 3711 1458 201 0 41 chr12 86315061 86315355 -57967134 + AluJb SINE Alu 6 287 -25 2364 94 0 25 chr12 86315409 86315728 -57966761 - AluSx SINE Alu -1 311 1 581 170 74 0 chr12 86315985 86316120 -57966369 + L1MA7 LINE L1 6142 6285 -6 500 298 65 7 chr12 86316408 86316588 -57965901 + MIR SINE MIR 8 206 -56 24 96 0 0 chr12 86316993 86317066 -57965423 + AT_rich Low_complexity Low_complexity 1 73 0 194 360 0 40 chr12 86317433 86317558 -57964931 + L2 LINE L2 2567 2686 -628 2219 103 0 3 chr12 86317594 86317884 -57964605 - AluSx SINE Alu -23 289 1 296 339 54 23 chr12 86318301 86318431 -57964058 - L2 LINE L2 0 3313 3180 599 296 5 16 chr12 86318547 86318733 -57963756 + MIR SINE MIR 7 190 -72 264 333 25 62 chr12 86318787 86319027 -57963462 - L2 LINE L2 -215 3057 2827 1583 245 41 83 chr12 86320104 86320369 -57962120 - L1MC3 LINE L1 -1394 6391 6116 2406 68 0 0 chr12 86320369 86320662 -57961827 - AluY SINE Alu -18 293 1 1583 245 41 83 chr12 86320662 86320733 -57961756 - L1MC3 LINE L1 -1669 6116 6044 1824 149 54 35 chr12 86320733 86321101 -57961388 - THE1C LTR MaLR 0 375 1 1583 245 41 83 chr12 86321101 86321473 -57961016 - L1MC3 LINE L1 -1741 6044 5712 38 68 0 0 chr12 86321495 86321568 -57960921 + AT_rich Low_complexity Low_complexity 1 73 0 308 256 23 0 chr12 86322380 86322466 -57960023 + (CATATA)n Simple_repeat Simple_repeat 4 91 0 437 334 22 0 chr12 86323028 86323203 -57959286 - MIR SINE MIR -49 213 34 26 0 0 0 chr12 86323503 86323529 -57958960 + AT_rich Low_complexity Low_complexity 1 26 0 6510 52 12 70 chr12 86323977 86325728 -57956761 - SVA Other Other -763 1386 1 2196 122 0 0 chr12 86326583 86326924 -57955565 - AluSx SINE Alu 0 341 1 1004 314 42 51 chr12 86326986 86327536 -57954953 - L2 LINE L2 0 3313 2759 198 71 0 0 chr12 86328627 86328655 -57953834 + (TG)n Simple_repeat Simple_repeat 1 28 0 3450 148 40 13 chr12 86329419 86330093 -57952396 - L1MA4 LINE L1 -3 6297 5606 1276 229 111 36 chr12 86330127 86330595 -57951894 - Charlie4a DNA MER1_type -4 504 2 21 36 0 0 chr12 86330689 86330717 -57951772 + AT_rich Low_complexity Low_complexity 1 28 0 900 291 84 42 chr12 86331527 86331977 -57950512 - MLT1J LTR MaLR -42 469 1 364 392 51 31 chr12 86332458 86332713 -57949776 - L2 LINE L2 -4 3268 3009 2229 188 61 55 chr12 86332888 86333578 -57948911 + L1MDa LINE L1 1638 2331 -4209 222 165 38 0 chr12 86333601 86333680 -57948809 + (TA)n Simple_repeat Simple_repeat 1 82 0 9801 18 5 0 chr12 86333980 86335895 -57946594 - L1PA2 LINE L1 0 6155 4233 1675 171 19 39 chr12 86336254 86336564 -57945925 + AluJb SINE Alu 1 304 -8 2663 39 0 0 chr12 86337252 86337559 -57944930 + AluY SINE Alu 1 307 -4 24 32 0 0 chr12 86337903 86337934 -57944555 + AT_rich Low_complexity Low_complexity 1 31 0 1366 216 19 84 chr12 86338614 86339155 -57943334 + MLT1E1 LTR MaLR 4 654 0 191 338 59 15 chr12 86339503 86339571 -57942918 - MIR SINE MIR -180 82 12 1589 179 47 7 chr12 86339777 86340056 -57942433 + AluJb SINE Alu 2 291 -21 333 281 22 0 chr12 86340060 86340149 -57942340 - L1MC4 LINE L1 -1338 6704 6614 189 107 0 0 chr12 86340934 86340962 -57941527 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 320 246 62 15 chr12 86340963 86341093 -57941396 - L1ME4a LINE L1 -25 6096 5961 231 36 0 0 chr12 86341095 86341123 -57941366 + (TA)n Simple_repeat Simple_repeat 2 29 0 366 263 88 38 chr12 86341179 86341339 -57941150 - L1ME4a LINE L1 -262 5859 5692 198 0 0 0 chr12 86341406 86341428 -57941061 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 256 316 59 7 chr12 86342743 86342879 -57939610 + HAL1b LINE L1 375 517 -831 193 57 57 0 chr12 86342882 86342917 -57939572 + (TA)n Simple_repeat Simple_repeat 1 37 0 297 283 79 13 chr12 86343129 86343281 -57939208 + HAL1b LINE L1 566 727 -621 23629 43 11 0 chr12 86343390 86347106 -57935383 - L1PA5 LINE L1 -7 6147 2398 6539 53 3 3 chr12 86347272 86348661 -57933828 - L1PA7 LINE L1 0 6154 4744 638 333 58 34 chr12 86348668 86349033 -57933456 + L2 LINE L2 2643 3011 -302 305 312 54 11 chr12 86349055 86349148 -57933341 + L2 LINE L2 3158 3254 -18 268 289 96 39 chr12 86349238 86349394 -57933095 - L2 LINE L2 -962 2352 2188 * 515 279 34 20 chr12 86349388 86349535 -57932954 - MIR SINE MIR -26 236 88 193 339 59 63 chr12 86349600 86349886 -57932603 - L2 LINE L2 -1215 2099 1815 5422 169 22 5 chr12 86349929 86351416 -57931073 - L1MA8 LINE L1 0 6291 4777 1969 88 0 46 chr12 86351422 86351706 -57930783 - AluSc SINE Alu 0 309 39 301 286 9 36 chr12 86352778 86352912 -57929577 - L1ME4a LINE L1 -531 5639 5539 310 302 69 44 chr12 86353857 86354097 -57928392 + MIR SINE MIR 5 250 -12 1973 185 35 31 chr12 86354119 86354574 -57927915 + MSTB2 LTR MaLR 1 457 0 1662 178 26 3 chr12 86355351 86355654 -57926835 - AluJo SINE Alu -2 310 1 265 246 72 0 chr12 86360154 86360223 -57922266 + MIR SINE MIR 185 258 -4 599 195 18 6 chr12 86360343 86360512 -57921977 + CT-rich Low_complexity Low_complexity 2 172 0 1962 100 4 4 chr12 86360513 86360784 -57921705 - AluSc SINE Alu -38 271 1 23 0 0 0 chr12 86360838 86360861 -57921628 + AT_rich Low_complexity Low_complexity 1 23 0 755 152 73 0 chr12 86360861 86361025 -57921464 - L1MA8 LINE L1 -3 6288 6113 591 320 140 20 chr12 86361462 86361862 -57920627 - L2 LINE L2 -1022 2292 1845 4258 193 61 29 chr12 86362896 86363062 -57919427 + Charlie1 DNA MER1_type 1687 1846 -915 1964 118 55 0 chr12 86363062 86363351 -57919138 - AluSx SINE Alu -6 306 2 4258 193 61 29 chr12 86363351 86364224 -57918265 + Charlie1 DNA MER1_type 1846 2759 -2 957 95 29 0 chr12 86364449 86364586 -57917903 - AluSg/x SINE Alu 0 312 172 21 0 0 0 chr12 86365599 86365620 -57916869 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 86366107 86366135 -57916354 + AT_rich Low_complexity Low_complexity 1 28 0 1103 111 6 6 chr12 86366361 86366533 -57915956 - L1MA6 LINE L1 -2 6298 6127 1649 158 3 31 chr12 86366533 86366824 -57915665 + L1MA7 LINE L1 5807 6089 -202 220 205 0 0 chr12 86367512 86367551 -57914938 + (CA)n Simple_repeat Simple_repeat 1 39 0 448 287 66 0 chr12 86367701 86367837 -57914652 - MIR SINE MIR -111 151 7 21 36 0 0 chr12 86370159 86370187 -57912302 + AT_rich Low_complexity Low_complexity 1 28 0 185 300 0 17 chr12 86370990 86371050 -57911439 + L2 LINE L2 3255 3313 0 22 0 0 0 chr12 86371802 86371824 -57910665 + AT_rich Low_complexity Low_complexity 1 22 0 455 279 44 7 chr12 86372458 86372594 -57909895 + MIR SINE MIR 84 224 -38 940 56 0 0 chr12 86373108 86373234 -57909255 + L1PA4 LINE L1 6030 6155 0 23 0 0 0 chr12 86373234 86373257 -57909232 + AT_rich Low_complexity Low_complexity 1 23 0 1543 226 46 25 chr12 86373443 86373811 -57908678 - MER70A LTR ERVL -59 413 38 484 280 104 11 chr12 86374535 86374717 -57907772 + MIR SINE MIR 63 261 -1 459 0 0 0 chr12 86374743 86374794 -57907695 + (CA)n Simple_repeat Simple_repeat 2 52 0 1835 172 7 0 chr12 86375012 86375303 -57907186 + AluSx SINE Alu 1 293 -19 1607 258 57 28 chr12 86375627 86376408 -57906081 - L2 LINE L2 -10 3303 2510 270 210 25 37 chr12 86376430 86376511 -57905978 - MER116 DNA Mariner 0 80 1 255 319 32 0 chr12 86376511 86376605 -57905884 - L2 LINE L2 -890 2424 2328 214 217 67 142 chr12 86376618 86376738 -57905751 - L2 LINE L2 -1473 1841 1731 180 381 48 0 chr12 86376909 86377014 -57905475 - L2 LINE L2 -86 3186 3077 346 289 16 41 chr12 86377071 86377192 -57905297 - MIR SINE MIR -93 169 52 197 174 0 65 chr12 86377860 86377906 -57904583 + L2 LINE L2 3221 3263 -9 24 32 0 0 chr12 86378637 86378668 -57903821 + AT_rich Low_complexity Low_complexity 1 31 0 2625 55 0 0 chr12 86379326 86379634 -57902855 + AluY SINE Alu 1 308 -3 1566 191 0 7 chr12 86379683 86379965 -57902524 + AluJb SINE Alu 1 280 -32 306 0 0 0 chr12 86379968 86380002 -57902487 + (CAA)n Simple_repeat Simple_repeat 2 35 0 383 214 12 24 chr12 86380942 86381026 -57901463 - AluJ/FLAM SINE Alu -218 84 2 392 336 163 23 chr12 86381417 86381850 -57900639 - L2 LINE L2 -1 3271 2778 304 259 188 0 chr12 86381906 86382018 -57900471 - MIR SINE MIR -5 257 125 2014 218 70 7 chr12 86382342 86382884 -57899605 + L1M4 LINE L1 4198 4773 -1373 2159 124 3 0 chr12 86382980 86383286 -57899203 - AluSx SINE Alu -5 307 1 1352 188 9 143 chr12 86383315 86383763 -57898726 + MLT1D LTR MaLR 1 388 -117 557 256 107 47 chr12 86383973 86384188 -57898301 + MIR SINE MIR 5 232 -30 304 308 29 10 chr12 86384602 86384706 -57897783 - L2 LINE L2 -7 3306 3201 2663 282 148 15 chr12 86384776 86386071 -57896418 - L2 LINE L2 -4 3309 1839 286 250 71 12 chr12 86386074 86386158 -57896331 - L2 LINE L2 -1857 1457 1369 204 260 0 0 chr12 86386410 86386460 -57896029 + MIR SINE MIR 2 51 -211 652 304 57 10 chr12 86386566 86386760 -57895729 + MIR SINE MIR 12 214 -48 26 30 0 0 chr12 86386920 86386953 -57895536 + AT_rich Low_complexity Low_complexity 1 33 0 251 330 90 10 chr12 86389668 86389768 -57892721 - L2 LINE L2 -230 3042 2935 198 306 157 9 chr12 86389952 86390060 -57892429 + MER5A DNA MER1_type 54 177 -12 225 0 0 0 chr12 86390687 86390712 -57891777 + (T)n Simple_repeat Simple_repeat 1 25 0 303 323 115 0 chr12 86390926 86391056 -57891433 - MIR SINE MIR -14 248 104 294 261 241 26 chr12 86391298 86391493 -57890996 + MIR SINE MIR 20 256 -6 295 333 62 0 chr12 86391528 86391624 -57890865 - L2 LINE L2 -4 3309 3208 21 36 0 0 chr12 86392325 86392353 -57890136 + AT_rich Low_complexity Low_complexity 1 28 0 314 314 160 48 chr12 86394061 86394267 -57888222 - L2 LINE L2 -1 3271 3020 1883 96 37 0 chr12 86394267 86394561 -57887928 - AluY SINE Alu 0 304 1 314 314 160 48 chr12 86394561 86394646 -57887843 - L2 LINE L2 -252 3020 2946 1169 148 44 10 chr12 86394649 86394852 -57887637 + MER2 DNA MER2_type 1 210 -135 288 152 0 0 chr12 86394858 86394924 -57887565 + T-rich Low_complexity Low_complexity 1 66 0 770 138 4 169 chr12 86394949 86395180 -57887309 - 7SK RNA RNA 0 193 1 355 173 0 86 chr12 86395182 86395263 -57887226 + MER2 DNA MER2_type 272 345 0 1037 105 0 0 chr12 86395772 86395905 -57886584 + AluSg/x SINE Alu 125 257 -55 23 0 0 0 chr12 86396253 86396276 -57886213 + AT_rich Low_complexity Low_complexity 1 23 0 484 117 29 35 chr12 86396377 86396548 -57885941 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 314 68 95 0 chr12 86396554 86396628 -57885861 + (TA)n Simple_repeat Simple_repeat 1 81 0 1891 131 10 37 chr12 86396628 86396925 -57885564 - AluSx SINE Alu -23 289 1 21 36 0 0 chr12 86397466 86397494 -57884995 + AT_rich Low_complexity Low_complexity 1 28 0 182 313 0 21 chr12 86397917 86397965 -57884524 + L2 LINE L2 3018 3064 -208 313 288 127 88 chr12 86397980 86398320 -57884169 + L2 LINE L2 2915 3267 -5 25 0 0 0 chr12 86398673 86398698 -57883791 + AT_rich Low_complexity Low_complexity 1 25 0 250 147 103 29 chr12 86399559 86399627 -57882862 - L1PB4 LINE L1 0 6156 6084 611 256 113 10 chr12 86400079 86400274 -57882215 + MIR SINE MIR 48 262 0 312 322 98 38 chr12 86400587 86400770 -57881719 + MIR SINE MIR 19 212 -50 357 333 62 0 chr12 86401244 86401373 -57881116 - L2 LINE L2 -10 3303 3167 1970 138 0 0 chr12 86401384 86401697 -57880792 - AluSx SINE Alu 0 313 1 27 0 0 0 chr12 86401776 86401803 -57880686 + AT_rich Low_complexity Low_complexity 1 27 0 40 59 0 0 chr12 86402144 86402212 -57880277 + AT_rich Low_complexity Low_complexity 1 68 0 891 190 12 0 chr12 86402626 86402789 -57879700 + FRAM SINE Alu 1 164 -12 1236 97 4 4 chr12 86402789 86403067 -57879422 + (GGA)n Simple_repeat Simple_repeat 1 279 0 672 259 27 11 chr12 86403109 86403294 -57879195 + MIR SINE MIR 72 259 -3 223 386 76 0 chr12 86403446 86403591 -57878898 + MIR SINE MIR 20 175 -87 358 206 0 43 chr12 86404206 86404298 -57878191 + MER94 DNA DNA 14 101 -33 2271 109 0 10 chr12 86405050 86405361 -57877128 - AluSx SINE Alu -4 308 1 261 257 53 71 chr12 86405605 86405718 -57876771 - MIR SINE MIR -32 230 120 423 238 71 8 chr12 86405905 86406031 -57876458 - MIR SINE MIR -6 256 123 184 304 185 0 chr12 86406235 86406327 -57876162 + MIR SINE MIR 46 154 -108 554 192 32 8 chr12 86406330 86406455 -57876034 + FLAM_A SINE Alu 1 128 -5 255 125 0 0 chr12 86406480 86406520 -57875969 + (GGAAA)n Simple_repeat Simple_repeat 2 41 0 368 354 38 19 chr12 86406564 86406773 -57875716 - MIR SINE MIR -29 233 21 241 286 129 0 chr12 86407093 86407163 -57875326 + L2 LINE L2 3188 3266 -47 1946 139 3 16 chr12 86408609 86408912 -57873577 + AluSg SINE Alu 1 299 -11 310 283 20 30 chr12 86409694 86409793 -57872696 - MIR3 SINE MIR -26 182 85 25 31 0 0 chr12 86411756 86411788 -57870701 + AT_rich Low_complexity Low_complexity 1 32 0 213 154 0 0 chr12 86411850 86411889 -57870600 + GA-rich Low_complexity Low_complexity 2 40 0 1865 149 3 7 chr12 86412102 86412417 -57870072 - AluSx SINE Alu 0 318 5 294 338 0 0 chr12 86412541 86412677 -57869812 + G-rich Low_complexity Low_complexity 1 136 0 2685 208 52 46 chr12 86412981 86413630 -57868859 - MER82 DNA MER2_type 0 653 1 2026 126 7 13 chr12 86413750 86414060 -57868429 - AluSx SINE Alu -4 308 1 31 0 0 0 chr12 86414070 86414101 -57868388 + AT_rich Low_complexity Low_complexity 1 31 0 205 320 263 6 chr12 86414406 86414562 -57867927 - MIR SINE MIR -13 249 54 822 266 43 23 chr12 86414642 86414898 -57867591 - MIR SINE MIR 0 262 2 379 270 104 40 chr12 86415190 86415401 -57867088 + MIR SINE MIR 33 256 -6 196 336 40 81 chr12 86415603 86415752 -57866737 + MIR SINE MIR 3 145 -117 2613 158 50 2 chr12 86416339 86416775 -57865714 + LTR32 LTR ERVL 15 471 0 254 298 186 32 chr12 86416785 86416872 -57865617 - L2 LINE L2 -13 3300 3187 1727 147 32 55 chr12 86416872 86417184 -57865305 - AluJo SINE Alu -3 309 5 254 298 186 32 chr12 86417184 86417220 -57865269 - L2 LINE L2 -126 3187 3158 594 290 35 6 chr12 86417338 86417507 -57864982 - MIR SINE MIR 0 262 89 2384 315 48 32 chr12 86417507 86418653 -57863836 - HERV16 LTR ERVL -2440 2578 1305 2365 65 0 13 chr12 86418653 86418959 -57863530 + AluY SINE Alu 1 302 -9 2384 315 48 32 chr12 86418959 86419195 -57863294 - HERV16 LTR ERVL -3713 1305 1074 681 282 18 0 chr12 86419564 86419734 -57862755 - HERV16 LTR ERVL -4340 656 484 182 373 30 0 chr12 86419768 86419835 -57862654 - L2 LINE L2 -510 2804 2736 7419 176 53 14 chr12 86419866 86419946 -57862543 - L1PB4 LINE L1 0 6156 6081 2247 86 0 10 chr12 86419946 86420249 -57862240 - AluY SINE Alu -10 301 2 7419 176 53 14 chr12 86420249 86422551 -57859938 - L1PB4 LINE L1 -75 6081 3683 1202 333 105 32 chr12 86422552 86423420 -57859069 - L2 LINE L2 -561 2753 1823 3284 160 42 51 chr12 86423420 86424112 -57858377 + L1MB7 LINE L1 5431 6116 -68 21 0 0 0 chr12 86424190 86424211 -57858278 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 86424347 86424369 -57858120 + AT_rich Low_complexity Low_complexity 1 22 0 185 266 117 21 chr12 86425020 86425114 -57857375 + L2 LINE L2 2403 2505 -809 240 355 99 0 chr12 86425205 86425326 -57857163 + MLT1I LTR MaLR 89 221 -188 392 263 0 0 chr12 86425438 86425533 -57856956 + MLT1I LTR MaLR 315 409 0 411 268 146 29 chr12 86425557 86425796 -57856693 + L1ME4a LINE L1 5684 5950 -171 2189 116 0 3 chr12 86426594 86426895 -57855594 + AluSc SINE Alu 1 300 -9 18131 118 11 27 chr12 86426923 86430813 -57851676 + L1P3 LINE L1 8 3928 -2533 29634 49 2 3 chr12 86430817 86434540 -57847949 + L1P LINE L1 1 3719 -2427 249 188 125 0 chr12 86434679 86434759 -57847730 - L1MC4 LINE L1 -1339 6703 6614 226 297 45 18 chr12 86434691 86434802 -57847687 + L1MC4 LINE L1 6614 6727 -1315 * 23 0 0 0 chr12 86434909 86434932 -57847557 + AT_rich Low_complexity Low_complexity 1 23 0 241 284 80 44 chr12 86435372 86435597 -57846892 - L2 LINE L2 -907 2407 2175 185 146 21 0 chr12 86435702 86435750 -57846739 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 23 0 0 0 chr12 86437346 86437369 -57845120 + AT_rich Low_complexity Low_complexity 1 23 0 183 320 0 0 chr12 86438244 86438294 -57844195 - L2 LINE L2 0 3313 3264 23 78 0 0 chr12 86438488 86438539 -57843950 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr12 86440182 86440203 -57842286 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr12 86441386 86441410 -57841079 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 216 67 0 0 chr12 86441499 86441529 -57840960 + (TG)n Simple_repeat Simple_repeat 2 31 0 186 392 48 8 chr12 86441756 86441881 -57840608 + L2 LINE L2 2260 2389 -925 207 0 0 0 chr12 86442077 86442100 -57840389 + (CA)n Simple_repeat Simple_repeat 1 23 0 1082 193 22 18 chr12 86442444 86442667 -57839822 - MER49 LTR ERV1 -699 224 1 474 390 6 6 chr12 86442770 86442942 -57839547 + MER91A DNA MER1_type 1 172 -24 269 266 31 0 chr12 86442951 86443015 -57839474 + MER91A DNA MER1_type 90 155 -41 757 91 0 0 chr12 86443458 86443557 -57838932 - AluY SINE Alu -174 137 39 699 106 0 0 chr12 86443692 86443786 -57838703 + L1P LINE L1 5 98 -6048 * 13164 81 6 0 chr12 86443784 86445557 -57836932 + L1P LINE L1 623 2406 -3740 29 0 0 0 chr12 86445835 86445864 -57836625 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 86446066 86446094 -57836395 + AT_rich Low_complexity Low_complexity 1 28 0 1888 136 7 0 chr12 86446193 86446465 -57836024 - AluSx SINE Alu -14 298 25 2010 109 0 0 chr12 86446676 86446979 -57835510 + AluSc SINE Alu 23 325 0 270 299 141 11 chr12 86447195 86447372 -57835117 - MIR SINE MIR -61 201 2 968 211 152 78 chr12 86447558 86447919 -57834570 - MLT1B LTR MaLR -2 388 1 251 289 67 67 chr12 86448331 86448466 -57834023 - MIR SINE MIR -19 243 109 720 306 95 21 chr12 86448849 86449176 -57833313 - L2 LINE L2 -20 3293 2943 858 237 7 72 chr12 86449373 86449527 -57832962 - L2 LINE L2 -1171 2143 2015 357 0 0 0 chr12 86449527 86449571 -57832918 + L1PA3 LINE L1 6109 6152 -3 858 237 7 72 chr12 86449571 86449707 -57832782 - L2 LINE L2 -1299 2015 1872 213 318 138 0 chr12 86449828 86449956 -57832533 - MIR SINE MIR -63 145 4 196 319 59 34 chr12 86452022 86452141 -57830348 - MIR3 SINE MIR -5 203 82 21 0 0 0 chr12 86452408 86452429 -57830060 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr12 86453082 86453133 -57829356 + AT_rich Low_complexity Low_complexity 1 51 0 362 206 37 37 chr12 86453312 86453419 -57829070 - L2 LINE L2 -8 3305 3199 274 274 44 18 chr12 86453545 86453658 -57828831 + L1MC4a LINE L1 4900 5015 -1131 1073 275 87 36 chr12 86453879 86454544 -57827945 + L1MC4a LINE L1 5254 5952 -1856 36 23 0 0 chr12 86454702 86454745 -57827744 + AT_rich Low_complexity Low_complexity 1 43 0 218 254 28 56 chr12 86454814 86454885 -57827604 - L2 LINE L2 -199 3073 3005 243 257 57 0 chr12 86454885 86454955 -57827534 + L1PA8A LINE L1 5923 5996 -135 369 348 162 8 chr12 86455048 86455442 -57827047 - L2 LINE L2 -635 2679 2225 16405 36 0 0 chr12 86455543 86458287 -57824202 + L1PA4 LINE L1 3408 6151 -4 946 133 17 46 chr12 86458331 86458504 -57823985 - THE1B LTR MaLR -194 170 3 3516 169 20 28 chr12 86458505 86459214 -57823275 + MER49 LTR ERV1 185 887 -36 23213 51 12 1 chr12 86459377 86462843 -57819646 + L1P LINE L1 578 4078 -2068 357 333 62 0 chr12 86463275 86463404 -57819085 - L2 LINE L2 -10 3303 3167 2144 95 0 3 chr12 86463415 86463729 -57818760 - AluSx SINE Alu 0 313 1 4452 160 39 8 chr12 86464629 86466119 -57816370 - L1PB4 LINE L1 -197 5959 4433 232 421 26 5 chr12 86466372 86466562 -57815927 + L2 LINE L2 2424 2617 -697 1613 260 28 6 chr12 86466571 86467113 -57815376 - MLT1E LTR MaLR 0 593 1 317 249 98 40 chr12 86467250 86467423 -57815066 + HAL1 LINE L1 2248 2430 -77 1724 295 76 29 chr12 86467552 86468414 -57814075 - L2 LINE L2 -2042 1272 292 2488 53 0 0 chr12 86468499 86468802 -57813687 - AluY SINE Alu -8 303 1 1257 176 46 61 chr12 86469597 86469881 -57812608 - MER33 DNA MER1_type -2261 324 44 1232 27 0 0 chr12 86469881 86470027 -57812462 + L1PA5 LINE L1 6007 6152 -2 1257 176 46 61 chr12 86470027 86470071 -57812418 - MER33 DNA MER1_type -2541 44 1 3252 130 30 25 chr12 86471231 86471755 -57810734 - MER1A DNA MER1_type 0 527 1 265 220 242 0 chr12 86472656 86472747 -57809742 - L2 LINE L2 -1 3312 3200 329 354 67 0 chr12 86473269 86473433 -57809056 - MIR3 SINE MIR -15 193 19 216 303 143 25 chr12 86474083 86474321 -57808168 - L2 LINE L2 -2740 574 309 22 70 0 0 chr12 86474565 86474608 -57807881 + AT_rich Low_complexity Low_complexity 1 43 0 347 281 78 26 chr12 86474797 86474950 -57807539 - L1MEd LINE L1 -4641 1669 1509 827 272 83 54 chr12 86474952 86475803 -57806686 - L1MEd LINE L1 -4864 1255 534 22 0 0 0 chr12 86479150 86479172 -57803317 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr12 86480401 86480431 -57802058 + (CA)n Simple_repeat Simple_repeat 2 31 0 247 296 99 0 chr12 86480457 86480538 -57801951 + L2 LINE L2 3225 3313 0 485 128 33 33 chr12 86480569 86480749 -57801740 + (TA)n Simple_repeat Simple_repeat 1 180 0 232 171 23 45 chr12 86480749 86480837 -57801652 + (TTATA)n Simple_repeat Simple_repeat 5 90 0 210 158 53 0 chr12 86480944 86481001 -57801488 + (TA)n Simple_repeat Simple_repeat 2 61 0 193 255 82 51 chr12 86481220 86481318 -57801171 + MIR SINE MIR 7 107 -155 1941 114 0 48 chr12 86481448 86481763 -57800726 - AluSx SINE Alu -12 300 1 21 57 0 0 chr12 86482812 86482847 -57799642 + AT_rich Low_complexity Low_complexity 1 35 0 447 317 127 0 chr12 86483249 86483454 -57799035 - L2 LINE L2 -692 2622 2392 331 286 147 2 chr12 86484870 86485006 -57797483 - MIR SINE MIR -98 164 12 204 40 0 0 chr12 86485941 86485966 -57796523 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 1726 127 28 3 chr12 86485966 86486250 -57796239 - L1PA10 LINE L1 -19 6149 5859 240 341 23 0 chr12 86487380 86487468 -57795021 + L3 LINE CR1 1114 1203 -374 445 215 21 0 chr12 86487485 86487578 -57794911 - MLT1K LTR MaLR -5 583 489 332 345 54 27 chr12 86487605 86487828 -57794661 - L2 LINE L2 -387 2927 2699 354 74 0 0 chr12 86487866 86487920 -57794569 + (TC)n Simple_repeat Simple_repeat 1 54 0 252 314 58 0 chr12 86489180 86489301 -57793188 - MER103 DNA DNA -4 162 35 183 283 67 0 chr12 86491893 86491953 -57790536 + L2 LINE L2 3158 3221 -92 1644 171 19 39 chr12 86492044 86492354 -57790135 + AluJb SINE Alu 1 304 -8 23 54 0 0 chr12 86493244 86493281 -57789208 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr12 86495320 86495342 -57787147 + AT_rich Low_complexity Low_complexity 1 22 0 249 98 0 0 chr12 86496269 86496310 -57786179 + (CA)n Simple_repeat Simple_repeat 2 42 0 229 286 14 0 chr12 86499338 86499408 -57783081 + MIR SINE MIR 160 230 -32 187 345 0 17 chr12 86500972 86501030 -57781459 + L2 LINE L2 3018 3074 -198 308 291 127 88 chr12 86501035 86501375 -57781114 + L2 LINE L2 2915 3267 -5 287 251 17 90 chr12 86502195 86502356 -57780133 + L1MC/D LINE L1 5492 5645 -483 186 216 0 0 chr12 86502608 86502645 -57779844 + A-rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr12 86506419 86506452 -57776037 + AT_rich Low_complexity Low_complexity 1 33 0 348 274 92 13 chr12 86506827 86506980 -57775509 + L1M4 LINE L1 3172 3336 -2810 478 161 0 0 chr12 86506983 86507064 -57775425 + FLAM_C SINE Alu 23 103 -40 1332 179 39 27 chr12 86507091 86507370 -57775119 + AluJb SINE Alu 23 304 0 305 354 53 0 chr12 86507594 86507707 -57774782 + L2 LINE L2 3153 3271 -1 189 74 0 0 chr12 86508190 86508217 -57774272 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 239 286 167 0 chr12 86509609 86509693 -57772796 + L2 LINE L2 3208 3305 -8 25 31 0 0 chr12 86510049 86510081 -57772408 + AT_rich Low_complexity Low_complexity 1 32 0 574 202 8 32 chr12 86510165 86510289 -57772200 + FLAM_A SINE Alu 2 122 -11 22 0 0 0 chr12 86510598 86510620 -57771869 + AT_rich Low_complexity Low_complexity 1 22 0 245 0 56 0 chr12 86511461 86511497 -57770992 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 1631 169 11 0 chr12 86511497 86511776 -57770713 - AluSx SINE Alu -1 320 4 22 0 0 0 chr12 86512410 86512432 -57770057 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr12 86512870 86512900 -57769589 + AT_rich Low_complexity Low_complexity 1 30 0 591 235 38 55 chr12 86513727 86513910 -57768579 + MIR SINE MIR 71 250 -12 207 69 0 0 chr12 86514634 86514663 -57767826 + (CA)n Simple_repeat Simple_repeat 2 30 0 2468 47 0 0 chr12 86515237 86515534 -57766955 + AluY SINE Alu 1 297 -14 2314 88 0 0 chr12 86517239 86517533 -57764956 + AluY SINE Alu 1 294 -17 359 345 35 0 chr12 86518189 86518331 -57764158 - MIR SINE MIR -28 234 88 293 318 60 36 chr12 86520445 86520587 -57761902 + MIR SINE MIR 2 151 -61 21 57 0 0 chr12 86520614 86520649 -57761840 + AT_rich Low_complexity Low_complexity 1 35 0 214 175 0 25 chr12 86520655 86520695 -57761794 + (CA)n Simple_repeat Simple_repeat 2 40 0 23 54 0 0 chr12 86520783 86520820 -57761669 + AT_rich Low_complexity Low_complexity 1 37 0 303 349 191 0 chr12 86523502 86523717 -57758772 + MIR SINE MIR 7 262 0 209 186 14 29 chr12 86525149 86525219 -57757270 + (TTA)n Simple_repeat Simple_repeat 2 70 0 1781 102 80 7 chr12 86525448 86525723 -57756766 + AluSx SINE Alu 2 296 -16 186 375 115 0 chr12 86525737 86525833 -57756656 + L2 LINE L2 3154 3260 -12 570 344 12 24 chr12 86527001 86527248 -57755241 + MIR SINE MIR 11 254 -8 221 346 68 43 chr12 86527234 86527396 -57755093 - MIR3 SINE MIR -11 197 32 * 29 0 0 0 chr12 86527464 86527493 -57754996 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr12 86527602 86527625 -57754864 + AT_rich Low_complexity Low_complexity 1 23 0 327 347 0 11 chr12 86531444 86531539 -57750950 + MER5A DNA MER1_type 71 164 -25 361 44 0 0 chr12 86531859 86531904 -57750585 - MADE1 DNA Mariner -1 79 35 441 0 0 0 chr12 86532057 86532106 -57750383 + (TA)n Simple_repeat Simple_repeat 2 50 0 254 247 118 21 chr12 86532298 86532391 -57750098 + MER5A DNA MER1_type 87 188 -1 224 351 63 0 chr12 86532398 86532509 -57749980 + L2 LINE L2 3154 3271 -1 23 33 0 0 chr12 86532681 86532711 -57749778 + AT_rich Low_complexity Low_complexity 1 30 0 2854 100 24 20 chr12 86533318 86533777 -57748712 + L1MA3 LINE L1 5842 6302 -3 213 39 0 0 chr12 86534143 86534169 -57748320 + (CAT)n Simple_repeat Simple_repeat 2 27 0 1542 145 14 65 chr12 86534169 86534325 -57748164 - AluJo SINE Alu -26 286 123 180 0 0 0 chr12 86534325 86534345 -57748144 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1872 138 0 7 chr12 86534345 86534628 -57747861 - AluSx SINE Alu -31 281 1 1542 145 14 65 chr12 86534628 86534760 -57747729 - AluJo SINE Alu -187 125 12 23 54 0 0 chr12 86534794 86534831 -57747658 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr12 86535161 86535185 -57747304 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr12 86535365 86535401 -57747088 + AT_rich Low_complexity Low_complexity 1 36 0 2153 119 0 3 chr12 86535448 86535741 -57746748 - AluSx SINE Alu -20 292 1 417 281 169 36 chr12 86536542 86536896 -57745593 + L2 LINE L2 2750 3313 0 2798 186 87 92 chr12 86537049 86537519 -57744970 - L1MD1 LINE L1 0 6636 6165 2024 125 7 0 chr12 86537519 86537880 -57744609 - AluSx SINE Alu 0 363 1 2798 186 87 92 chr12 86537880 86538449 -57744040 - L1MD1 LINE L1 -471 6165 5435 2222 101 0 0 chr12 86538449 86538756 -57743733 - AluY SINE Alu -4 307 1 2798 186 87 92 chr12 86538756 86538925 -57743564 - L1MD1 LINE L1 -1201 5435 5267 2258 249 53 36 chr12 86541093 86541841 -57740648 - L1MD1 LINE L1 -1888 4652 3892 1089 209 126 32 chr12 86541988 86542481 -57740008 + L1M4 LINE L1 2922 3460 -2686 1612 148 17 153 chr12 86542544 86542957 -57739532 - MLT1A1 LTR MaLR -8 357 1 1839 261 94 65 chr12 86542957 86543504 -57738985 - L1MD1 LINE L1 -5548 992 268 964 49 0 0 chr12 86543504 86543626 -57738863 - L1PA2 LINE L1 -1 6154 6033 1839 261 94 65 chr12 86543626 86543884 -57738605 - L1MD1 LINE L1 -6272 268 19 287 378 39 6 chr12 86544031 86544187 -57738302 - MIR3 SINE MIR -6 202 42 21 36 0 0 chr12 86545516 86545544 -57736945 + AT_rich Low_complexity Low_complexity 1 28 0 2261 89 3 0 chr12 86545607 86545899 -57736590 + AluSx SINE Alu 1 293 -19 1503 191 15 4 chr12 86546063 86546335 -57736154 + AluJo SINE Alu 3 277 -35 2036 122 10 0 chr12 86546335 86546628 -57735861 + AluSq SINE Alu 16 313 0 2136 118 3 7 chr12 86546900 86547197 -57735292 - AluSx SINE Alu -15 297 2 207 321 0 0 chr12 86547282 86547335 -57735154 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 2461 112 11 16 chr12 86547924 86548299 -57734190 - THE1C LTR MaLR 0 375 3 2150 31 0 0 chr12 86548828 86549088 -57733401 - L1PA4 LINE L1 -1 6154 5895 2349 73 0 10 chr12 86549136 86549450 -57733039 - AluY SINE Alu 0 311 1 182 125 42 83 chr12 86551527 86551575 -57730914 - L2 LINE L2 0 3272 3227 1749 193 3 0 chr12 86552111 86552411 -57730078 + AluJb SINE Alu 1 301 -11 659 280 154 12 chr12 86552602 86552934 -57729555 + L1MC/D LINE L1 5410 5788 -2020 403 239 31 31 chr12 86553005 86553125 -57729364 - MER94 DNA DNA -4 130 8 1611 204 31 11 chr12 86553125 86553483 -57729006 + MLT1A1 LTR MaLR 1 365 0 309 123 35 0 chr12 86553573 86553630 -57728859 + Alu SINE Alu 244 302 0 184 344 0 0 chr12 86553958 86554022 -57728467 - L2 LINE L2 -2 3311 3248 379 316 70 57 chr12 86554166 86554394 -57728095 + L3 LINE CR1 1270 1500 -77 2458 235 25 23 chr12 86554399 86555003 -57727486 - MLT1E3 LTR MaLR 0 624 20 181 195 98 0 chr12 86555040 86555081 -57727408 + L3b LINE CR1 1536 1580 -3 21 36 0 0 chr12 86555737 86555765 -57726724 + AT_rich Low_complexity Low_complexity 1 28 0 1716 282 40 6 chr12 86555800 86556296 -57726193 + L2 LINE L2 2226 2738 -576 290 297 127 8 chr12 86556343 86556461 -57726028 + L2 LINE L2 2874 3005 -308 3987 17 0 2 chr12 86556490 86556954 -57725535 - L1PA2 LINE L1 0 6155 5693 3410 8 0 0 chr12 86556954 86557342 -57725147 + L1PA2 LINE L1 5293 5680 -475 536 274 75 36 chr12 86557362 86557462 -57725027 + L2 LINE L2 3045 3140 -173 1539 212 42 3 chr12 86557462 86557792 -57724697 - MER2 DNA MER2_type 0 344 2 536 274 75 36 chr12 86557792 86557943 -57724546 + L2 LINE L2 3140 3306 -7 25 65 0 0 chr12 86557979 86558025 -57724464 + AT_rich Low_complexity Low_complexity 1 46 0 242 330 78 0 chr12 86558192 86558295 -57724194 + L2 LINE L2 3142 3252 -20 263 276 92 11 chr12 86560351 86560438 -57722051 + L2 LINE L2 3169 3262 -10 811 311 171 57 chr12 86560473 86561143 -57721346 + L2 LINE L2 1963 2783 -530 2495 62 3 3 chr12 86561143 86561449 -57721040 + AluY SINE Alu 1 306 -5 811 311 171 57 chr12 86561449 86561773 -57720716 + L2 LINE L2 2783 3069 -244 1792 174 0 10 chr12 86561878 86562176 -57720313 - AluJb SINE Alu -7 305 11 237 333 15 0 chr12 86562190 86562256 -57720233 + L2 LINE L2 3246 3312 -1 1972 141 0 3 chr12 86563493 86563784 -57718705 + AluSx SINE Alu 9 298 -14 23 0 0 0 chr12 86564048 86564071 -57718418 + AT_rich Low_complexity Low_complexity 1 23 0 620 375 111 6 chr12 86565238 86565772 -57716717 + L2 LINE L2 2229 2818 -496 2100 43 0 0 chr12 86566323 86566577 -57715912 - L1PA3 LINE L1 -1 6154 5901 228 282 56 0 chr12 86567651 86567722 -57714767 - MIR SINE MIR -3 259 185 789 193 66 22 chr12 86568457 86568638 -57713851 - MER5A DNA MER1_type 0 189 1 23 54 0 0 chr12 86570433 86570470 -57712019 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr12 86570606 86570632 -57711857 + AT_rich Low_complexity Low_complexity 1 26 0 991 265 64 57 chr12 86572093 86572934 -57709555 + L1MEc LINE L1 1916 2726 -3489 4522 256 76 30 chr12 86572941 86573230 -57709259 + L1MEc LINE L1 3174 3448 -2767 763 74 0 0 chr12 86573230 86573325 -57709164 + L1PA8 LINE L1 6062 6156 -16 2273 67 3 7 chr12 86573325 86573622 -57708867 - AluY SINE Alu -15 296 1 4522 256 76 30 chr12 86573622 86575392 -57707097 + L1MEc LINE L1 3447 5328 -887 1962 121 18 0 chr12 86575392 86575664 -57706825 + AluSg SINE Alu 1 277 -33 5668 72 5 3 chr12 86575664 86577035 -57705454 + L1PA7 LINE L1 4572 5946 -208 558 200 0 0 chr12 86577150 86577250 -57705239 - AluJ/FLAM SINE Alu -212 100 1 1255 267 139 18 chr12 86577764 86578444 -57704045 - L1ME3 LINE L1 0 6162 5349 3868 200 115 16 chr12 86578444 86579429 -57703060 - Tigger6a DNA MER2_type 0 1083 2 1255 267 139 18 chr12 86579429 86579537 -57702952 - L1ME3 LINE L1 -813 5349 5255 195 100 0 0 chr12 86579537 86579567 -57702922 + (T)n Simple_repeat Simple_repeat 1 30 0 1861 5 5 0 chr12 86579575 86579790 -57702699 - L1PA3 LINE L1 -204 5951 5736 1504 12 0 0 chr12 86579790 86579959 -57702530 + L1PA3 LINE L1 5980 6151 -4 216 210 59 59 chr12 86580183 86580302 -57702187 + MIR SINE MIR 61 179 -83 2235 107 0 0 chr12 86580338 86580638 -57701851 + AluSx SINE Alu 1 300 -12 223 342 0 25 chr12 86581271 86581350 -57701139 - MIR SINE MIR -168 94 18 33 66 0 0 chr12 86581615 86581676 -57700813 + AT_rich Low_complexity Low_complexity 1 61 0 905 101 17 0 chr12 86581742 86581861 -57700628 + BC200 scRNA scRNA 1 121 -79 195 100 0 0 chr12 86581862 86581892 -57700597 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1258 270 66 64 chr12 86582462 86582995 -57699494 + L2 LINE L2 2779 3308 -5 314 157 0 0 chr12 86583070 86583121 -57699368 + L2 LINE L2 3263 3313 0 1238 213 52 63 chr12 86584011 86584378 -57698111 - MLT1A1 LTR MaLR -2 363 1 483 221 52 22 chr12 86585150 86585286 -57697203 - Charlie4 DNA MER1_type -1 1960 1821 187 281 35 0 chr12 86585627 86585684 -57696805 - MIR SINE MIR -129 133 75 31 26 0 0 chr12 86586556 86586594 -57695895 + AT_rich Low_complexity Low_complexity 1 38 0 596 278 141 0 chr12 86586836 86587063 -57695426 + MIR SINE MIR 2 260 -2 205 216 0 0 chr12 86587099 86587136 -57695353 + (TA)n Simple_repeat Simple_repeat 1 37 0 656 345 125 9 chr12 86587700 86588147 -57694342 - L2 LINE L2 -885 2429 1931 301 303 84 17 chr12 86588696 86588874 -57693615 - MIR SINE MIR -4 258 69 363 141 0 0 chr12 86589058 86589122 -57693367 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 286 280 19 28 chr12 86589122 86589229 -57693260 - L2 LINE L2 -1 3312 3207 56 29 0 0 chr12 86590171 86590241 -57692248 + AT_rich Low_complexity Low_complexity 1 70 0 255 214 139 0 chr12 86590278 86590352 -57692137 + MIR SINE MIR 26 113 -95 21 57 0 0 chr12 86590792 86590827 -57691662 + AT_rich Low_complexity Low_complexity 1 35 0 204 355 74 26 chr12 86591564 86591753 -57690736 - MIR SINE MIR -44 218 21 21 0 0 0 chr12 86591876 86591897 -57690592 + AT_rich Low_complexity Low_complexity 1 21 0 2542 193 25 49 chr12 86593904 86594535 -57687954 + L1MD2 LINE L1 5258 5873 -486 683 274 70 21 chr12 86594611 86594896 -57687593 + L1MD2 LINE L1 6030 6328 -31 347 191 0 0 chr12 86594897 86594960 -57687529 + Alu SINE Alu 236 298 -4 31 26 0 0 chr12 86595179 86595217 -57687272 + AT_rich Low_complexity Low_complexity 1 38 0 330 236 171 8 chr12 86596339 86596462 -57686027 + MIR SINE MIR 47 189 -73 21 0 0 0 chr12 86596543 86596564 -57685925 + AT_rich Low_complexity Low_complexity 1 21 0 218 329 143 14 chr12 86596585 86596725 -57685764 + MER5A DNA MER1_type 32 189 0 393 167 0 0 chr12 86597705 86597783 -57684706 + (TA)n Simple_repeat Simple_repeat 1 78 0 32 57 0 0 chr12 86598101 86598154 -57684335 + AT_rich Low_complexity Low_complexity 1 53 0 530 235 95 72 chr12 86598691 86598912 -57683577 + MIR SINE MIR 1 226 -36 673 313 72 4 chr12 86599472 86599734 -57682755 + LTR16B LTR ERVL 185 464 0 396 0 0 0 chr12 86599986 86600030 -57682459 + (CA)n Simple_repeat Simple_repeat 1 44 0 394 348 56 28 chr12 86600124 86600446 -57682043 + L1MC4a LINE L1 5560 5890 -1918 34 42 0 0 chr12 86601328 86601376 -57681113 + AT_rich Low_complexity Low_complexity 1 48 0 304 123 62 46 chr12 86603906 86603971 -57678518 - L1PA14 LINE L1 -4 6157 6092 778 167 157 50 chr12 86604000 86604198 -57678291 + MER20 DNA MER1_type 1 219 0 209 260 0 0 chr12 86604201 86604251 -57678238 - MIR SINE MIR -101 161 112 281 329 161 7 chr12 86604329 86604478 -57678011 + MIR SINE MIR 35 206 -56 21 71 0 0 chr12 86604478 86604520 -57677969 + AT_rich Low_complexity Low_complexity 1 42 0 1359 162 36 0 chr12 86606419 86606641 -57675848 + MER30 DNA MER1_type 1 230 0 203 352 42 47 chr12 86607844 86608037 -57674452 + MIR SINE MIR 1 192 -70 403 296 31 58 chr12 86608096 86608322 -57674167 - MIR SINE MIR -30 232 13 645 164 0 0 chr12 86608694 86608816 -57673673 - L1MA7 LINE L1 -11 6280 6159 333 0 0 0 chr12 86608971 86609008 -57673481 + (TAA)n Simple_repeat Simple_repeat 3 39 0 336 143 0 0 chr12 86609008 86609064 -57673425 + (GGA)n Simple_repeat Simple_repeat 3 58 0 944 271 71 63 chr12 86610249 86610521 -57671968 - L2 LINE L2 -8 3305 3037 998 192 53 151 chr12 86610521 86610778 -57671711 - MLT1B LTR MaLR 0 390 110 198 0 0 0 chr12 86610778 86610800 -57671689 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 222 37 0 0 chr12 86610799 86610826 -57671663 + (GA)n Simple_repeat Simple_repeat 2 28 0 998 192 53 151 chr12 86610800 86611000 -57671489 - MLT1B LTR MaLR -280 110 1 944 271 71 63 chr12 86611000 86611477 -57671012 - L2 LINE L2 -276 3037 2545 522 293 97 40 chr12 86611479 86612026 -57670463 - L1MC5 LINE L1 -60 7901 7324 428 304 37 51 chr12 86612094 86612345 -57670144 - L1MC4 LINE L1 -466 7422 7097 2198 92 10 0 chr12 86612345 86612639 -57669850 - AluSq SINE Alu -16 297 1 428 304 37 51 chr12 86612639 86612719 -57669770 - L1MC4 LINE L1 -791 7097 7017 690 167 0 15 chr12 86612868 86613000 -57669489 + L1PA14 LINE L1 6032 6161 0 287 322 77 4 chr12 86613039 86613272 -57669217 - L1MC4 LINE L1 -995 7047 6798 1348 223 128 15 chr12 86613278 86613686 -57668803 - L2 LINE L2 -778 2536 2083 287 222 48 0 chr12 86613961 86614024 -57668465 - LTR50 LTR ERVL 0 795 730 352 239 57 0 chr12 86614027 86614115 -57668374 - L1MA8 LINE L1 -5 6286 6194 253 216 45 75 chr12 86614121 86614255 -57668234 - LTR41 LTR ERVL -24 749 620 518 204 132 26 chr12 86614633 86614785 -57667704 - LTR50 LTR ERVL -610 185 18 26 64 0 0 chr12 86616063 86616110 -57666379 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr12 86617056 86617078 -57665411 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 86617188 86617209 -57665280 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 86617292 86617321 -57665168 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chr12 86617510 86617547 -57664942 + AT_rich Low_complexity Low_complexity 1 37 0 267 139 5 4 chr12 86618603 86618819 -57663670 + AluSx SINE Alu 1 293 -9 2209 103 7 3 chr12 86619611 86619911 -57662578 + AluSq SINE Alu 1 301 -12 22 0 0 0 chr12 86620071 86620093 -57662396 + AT_rich Low_complexity Low_complexity 1 22 0 454 238 65 36 chr12 86621457 86621625 -57660864 - MIR SINE MIR -43 219 47 360 0 0 0 chr12 86621651 86621691 -57660798 + (TG)n Simple_repeat Simple_repeat 2 41 0 637 175 7 7 chr12 86623457 86623600 -57658889 + CT-rich Low_complexity Low_complexity 2 144 0 2804 7 0 0 chr12 86624264 86624572 -57657917 + AluYa5 SINE Alu 1 308 -3 307 314 47 0 chr12 86624574 86624660 -57657829 - L2 LINE L2 -23 3249 3160 2280 101 0 0 chr12 86624781 86625078 -57657411 + AluSq SINE Alu 1 297 -16 379 261 22 0 chr12 86627889 86627981 -57654508 - MIR SINE MIR -120 142 49 540 286 168 0 chr12 86628097 86628317 -57654172 - LTR16C LTR ERVL -230 261 5 28 48 0 0 chr12 86630346 86630388 -57652101 + AT_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr12 86631943 86631992 -57650497 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr12 86632563 86632591 -57649898 + AT_rich Low_complexity Low_complexity 1 28 0 243 262 16 0 chr12 86632635 86632696 -57649793 - L2 LINE L2 0 3313 3252 576 233 100 0 chr12 86632706 86632856 -57649633 + MIR SINE MIR 71 235 -27 26 0 0 0 chr12 86634257 86634283 -57648206 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr12 86634535 86634584 -57647905 + AT_rich Low_complexity Low_complexity 1 49 0 1262 157 31 0 chr12 86635634 86635928 -57646561 - AluSq SINE Alu 0 384 84 2130 94 0 34 chr12 86636183 86636481 -57646008 + AluSx SINE Alu 1 288 -24 28 0 0 0 chr12 86636481 86636509 -57645980 + AT_rich Low_complexity Low_complexity 1 28 0 380 280 37 0 chr12 86636895 86637002 -57645487 + MIR SINE MIR 151 261 -1 312 48 0 0 chr12 86637179 86637221 -57645268 + (TC)n Simple_repeat Simple_repeat 1 42 0 249 146 0 0 chr12 86637221 86637269 -57645220 + (CA)n Simple_repeat Simple_repeat 2 49 0 302 303 192 19 chr12 86637898 86638084 -57644405 - MIR SINE MIR -10 252 34 22 0 0 0 chr12 86638580 86638602 -57643887 + AT_rich Low_complexity Low_complexity 1 22 0 300 265 139 63 chr12 86639020 86639459 -57643030 + L1ME4a LINE L1 5566 6035 -86 23 54 0 0 chr12 86639685 86639722 -57642767 + AT_rich Low_complexity Low_complexity 1 37 0 186 354 71 30 chr12 86639816 86639915 -57642574 - MIR SINE MIR -114 148 46 236 319 124 71 chr12 86640255 86640465 -57642024 - L3 LINE CR1 -144 1433 1213 419 211 25 0 chr12 86642831 86642992 -57639497 + (TA)n Simple_repeat Simple_repeat 1 165 0 294 260 0 0 chr12 86643099 86643199 -57639290 + (TA)n Simple_repeat Simple_repeat 2 101 0 250 307 62 57 chr12 86643422 86643614 -57638875 - MIR SINE MIR -11 251 59 300 333 99 14 chr12 86644032 86644173 -57638316 + MIR SINE MIR 15 167 -95 22 99 0 0 chr12 86644722 86644793 -57637696 + AT_rich Low_complexity Low_complexity 1 71 0 3958 305 141 12 chr12 86644945 86646549 -57635940 + L2 LINE L2 346 2210 -1104 1656 156 127 39 chr12 86646549 86646965 -57635524 - MLT2A2 LTR ERVL 0 453 1 3958 305 141 12 chr12 86646965 86647167 -57635322 + L2 LINE L2 2210 2385 -929 5606 140 50 4 chr12 86647175 86648324 -57634165 + L1MA5 LINE L1 5101 6300 0 1519 286 83 10 chr12 86648367 86648914 -57633575 + L2 LINE L2 2450 3032 -281 438 126 24 0 chr12 86648934 86649014 -57633475 + L1MA5 LINE L1 5850 5936 -253 414 256 35 74 chr12 86649075 86649278 -57633211 + L2 LINE L2 3119 3313 0 516 204 48 7 chr12 86649288 86649435 -57633054 + L1ME4a LINE L1 5967 6119 -2 493 256 68 14 chr12 86650127 86650361 -57632128 + MIR SINE MIR 17 262 0 1248 183 40 4 chr12 86652335 86652609 -57629880 + L1MB4 LINE L1 5896 6179 -1 933 314 96 11 chr12 86653183 86653888 -57628601 + L2 LINE L2 2204 3274 -39 341 183 0 85 chr12 86653980 86654062 -57628427 + MER116 DNA Mariner 1 75 -5 29 47 0 0 chr12 86655437 86655480 -57627009 + AT_rich Low_complexity Low_complexity 1 43 0 482 293 18 105 chr12 86655513 86655742 -57626747 - MIR SINE MIR -14 248 40 364 242 107 0 chr12 86656138 86656316 -57626173 - Charlie7 DNA MER1_type 0 2612 2416 * 1024 234 73 40 chr12 86656307 86656679 -57625810 - Charlie7 DNA MER1_type -1889 723 340 592 243 14 29 chr12 86656762 86656902 -57625587 + MER45A DNA AcHobo 1 138 -40 288 259 27 18 chr12 86656985 86657097 -57625392 - Charlie7 DNA MER1_type -2443 169 57 368 376 78 0 chr12 86657410 86657628 -57624861 + MIR SINE MIR 13 247 -15 2126 87 4 0 chr12 86657979 86658255 -57624234 + AluSx SINE Alu 3 279 -33 192 97 0 0 chr12 86658259 86658290 -57624199 + (CAA)n Simple_repeat Simple_repeat 2 32 0 234 313 132 28 chr12 86658463 86658607 -57623882 - MIR SINE MIR -52 210 52 456 276 52 0 chr12 86659127 86659243 -57623246 - L2 LINE L2 -10 3303 3182 289 261 70 35 chr12 86659279 86659394 -57623095 + MARNA DNA Mariner 373 491 -95 * 322 232 84 32 chr12 86659305 86659400 -57623089 - MARNA DNA Mariner -399 187 88 229 141 24 59 chr12 86661980 86662065 -57620424 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 221 344 211 0 chr12 86662574 86662702 -57619787 - MER5A DNA MER1_type -3 186 32 208 253 88 44 chr12 86663574 86663665 -57618824 + MIR SINE MIR 122 216 -46 213 383 112 5 chr12 86664189 86664385 -57618104 - MIR SINE MIR -42 220 4 25 0 0 0 chr12 86664630 86664655 -57617834 + AT_rich Low_complexity Low_complexity 1 25 0 311 176 0 15 chr12 86664750 86664818 -57617671 + (TATG)n Simple_repeat Simple_repeat 2 68 0 256 284 11 11 chr12 86664856 86664944 -57617545 + A-rich Low_complexity Low_complexity 2 89 0 343 325 91 20 chr12 86664976 86665173 -57617316 - MIR SINE MIR -32 230 20 28 29 0 0 chr12 86665422 86665457 -57617032 + AT_rich Low_complexity Low_complexity 1 35 0 445 254 58 14 chr12 86665457 86665595 -57616894 + MIR SINE MIR 32 175 -87 2246 214 37 45 chr12 86665658 86666275 -57616214 - LTR9 LTR ERV1 0 612 1 322 280 75 19 chr12 86666922 86667190 -57615299 + L1M4 LINE L1 2662 2944 -3202 977 258 121 21 chr12 86667745 86668307 -57614182 + L1ME2 LINE L1 981 1598 -5009 279 0 0 0 chr12 86668368 86668399 -57614090 + (CA)n Simple_repeat Simple_repeat 1 31 0 264 298 21 68 chr12 86668401 86668592 -57613897 + L1ME2 LINE L1 1420 1601 -4825 * 2919 244 80 50 chr12 86668588 86669008 -57613481 + L1ME2 LINE L1 4258 4664 -1762 1025 97 7 0 chr12 86669008 86669153 -57613336 + L1PA10 LINE L1 6004 6149 -19 180 0 0 0 chr12 86669153 86669173 -57613316 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 2919 244 80 50 chr12 86669173 86669898 -57612591 + L1ME2 LINE L1 4664 5366 -1060 221 0 0 33 chr12 86669898 86669928 -57612561 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1693 193 0 11 chr12 86669938 86670252 -57612237 + AluJo SINE Alu 1 311 0 2919 244 80 50 chr12 86670252 86670349 -57612140 + L1ME2 LINE L1 5374 5551 -875 2752 214 44 30 chr12 86670419 86671172 -57611317 + L1ME2 LINE L1 5666 6428 -16 29 70 0 0 chr12 86671552 86671609 -57610880 + AT_rich Low_complexity Low_complexity 1 57 0 1018 242 27 19 chr12 86672082 86672342 -57610147 - MIR SINE MIR 0 262 1 222 192 0 0 chr12 86674105 86674157 -57608332 + (TA)n Simple_repeat Simple_repeat 2 53 0 519 17 0 0 chr12 86675380 86675440 -57607049 + (TAAAA)n Simple_repeat Simple_repeat 1 60 0 697 269 117 8 chr12 86675564 86675813 -57606676 + MER93b LTR ERV1 98 373 0 331 253 65 39 chr12 86676145 86676299 -57606190 - L1ME4a LINE L1 0 6121 5964 268 255 128 0 chr12 86677004 86677106 -57605383 + MIR SINE MIR 141 255 -7 241 154 0 0 chr12 86677576 86677615 -57604874 - MER5B DNA MER1_type -135 43 5 224 254 18 0 chr12 86677671 86677726 -57604763 - MER5A DNA MER1_type -84 105 50 317 305 0 0 chr12 86679252 86679334 -57603155 + CT-rich Low_complexity Low_complexity 1 82 0 233 29 0 29 chr12 86682243 86682278 -57600211 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 289 346 23 8 chr12 86682438 86682571 -57599918 + MIR SINE MIR 78 212 -50 21 36 0 0 chr12 86682875 86682903 -57599586 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr12 86683462 86683505 -57598984 + AT_rich Low_complexity Low_complexity 1 43 0 470 364 78 5 chr12 86683642 86683859 -57598630 - MIR SINE MIR -16 246 14 21 57 0 0 chr12 86683861 86683896 -57598593 + AT_rich Low_complexity Low_complexity 1 35 0 445 274 0 9 chr12 86683966 86684079 -57598410 - MER81 DNA DNA 0 114 3 227 197 14 42 chr12 86684889 86684960 -57597529 + CT-rich Low_complexity Low_complexity 2 70 0 425 250 121 8 chr12 86687060 86687192 -57595297 + L2 LINE L2 3162 3308 -5 206 211 18 35 chr12 86687837 86687894 -57594595 + GA-rich Low_complexity Low_complexity 5 60 0 233 358 190 5 chr12 86687966 86688187 -57594302 - MIR SINE MIR 0 262 1 259 185 77 31 chr12 86692557 86692622 -57589867 + MIR SINE MIR 174 241 -21 279 200 15 77 chr12 86692861 86692926 -57589563 - MIR SINE MIR -194 68 8 626 198 56 0 chr12 86692973 86693099 -57589390 - FLAM_A SINE Alu 0 133 1 189 0 0 0 chr12 86695171 86695192 -57587297 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 200 35 35 0 chr12 86695683 86695712 -57586777 + (TC)n Simple_repeat Simple_repeat 1 30 0 518 257 124 28 chr12 86696113 86696331 -57586158 + MIR SINE MIR 19 257 -5 186 189 0 0 chr12 86700243 86700280 -57582209 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chr12 86700980 86701012 -57581477 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr12 86701135 86701163 -57581326 + AT_rich Low_complexity Low_complexity 1 28 0 244 246 62 0 chr12 86704001 86704066 -57578423 - MIR SINE MIR -104 158 90 689 304 17 17 chr12 86704070 86704294 -57578195 - MLT1H1 LTR MaLR -272 277 1 208 329 41 0 chr12 86704304 86704377 -57578112 + L2 LINE L2 1794 1869 -1445 528 310 43 66 chr12 86704429 86704732 -57577757 + L2 LINE L2 2236 2531 -783 1122 298 70 42 chr12 86704812 86705339 -57577150 + MLT1K LTR MaLR 46 587 -1 439 348 71 32 chr12 86705339 86705792 -57576697 + L2 LINE L2 2648 3119 -153 182 132 53 0 chr12 86705978 86706016 -57576473 + (TATG)n Simple_repeat Simple_repeat 3 42 0 582 293 28 31 chr12 86706696 86706926 -57575563 + MIR SINE MIR 32 256 -6 1014 182 0 11 chr12 86708845 86709021 -57573468 - AluJb SINE Alu -18 294 121 21 79 0 34 chr12 86710917 86711006 -57571483 + AT_rich Low_complexity Low_complexity 1 86 0 1671 182 17 17 chr12 86712740 86713042 -57569447 + AluJb SINE Alu 1 302 -10 188 321 0 0 chr12 86714610 86714663 -57567826 - L2 LINE L2 -12 3260 3208 * 196 203 13 152 chr12 86714633 86714712 -57567777 - MIR SINE MIR -92 170 103 2054 108 10 48 chr12 86714946 86715260 -57567229 + AluSp SINE Alu 1 302 -11 41 78 0 0 chr12 86715319 86715409 -57567080 + AT_rich Low_complexity Low_complexity 1 90 0 745 279 131 63 chr12 86715561 86715741 -57566748 + L1ME LINE L1 3394 3560 -2586 2343 93 0 3 chr12 86715741 86716052 -57566437 - AluSx SINE Alu -2 310 1 745 279 131 63 chr12 86716052 86716899 -57565590 + L1ME LINE L1 3560 4348 -1798 1968 151 0 0 chr12 86716899 86717178 -57565311 + AluSx SINE Alu 1 279 -33 745 279 131 63 chr12 86717178 86718026 -57564463 + L1ME LINE L1 4348 5398 -748 697 178 0 0 chr12 86718030 86718148 -57564341 + FLAM_C SINE Alu 1 118 -25 270 304 0 0 chr12 86718185 86718277 -57564212 + L1ME LINE L1 5385 5476 -698 295 217 0 0 chr12 86718284 86718344 -57564145 + L1PB4 LINE L1 6089 6148 -8 * 518 302 0 12 chr12 86718342 86718514 -57563975 + L1ME LINE L1 5476 5645 -525 976 280 31 34 chr12 86718527 86718848 -57563641 + Charlie2 DNA MER1_type 1 320 -2462 1743 228 62 43 chr12 86718895 86719468 -57563021 + Charlie2 DNA MER1_type 1855 2445 -417 1643 190 0 20 chr12 86719468 86719763 -57562726 - AluJo SINE Alu -23 289 1 1743 228 62 43 chr12 86719763 86719885 -57562604 + Charlie2 DNA MER1_type 2445 2563 -299 237 270 54 0 chr12 86719928 86720002 -57562487 - MER112 DNA MER1_type -112 148 71 28 61 0 0 chr12 86720198 86720247 -57562242 + AT_rich Low_complexity Low_complexity 1 49 0 674 281 22 5 chr12 86720586 86720769 -57561720 - LTR16A1 LTR ERVL -16 441 256 2648 121 13 57 chr12 86720769 86721242 -57561247 - Tigger2 DNA MER2_type 0 2718 2267 1414 75 66 0 chr12 86721968 86722181 -57560308 + L1PA13 LINE L1 5934 6160 -3 368 274 215 16 chr12 86722399 86722585 -57559904 + MIR SINE MIR 3 225 -37 33 0 0 0 chr12 86723241 86723274 -57559215 + AT_rich Low_complexity Low_complexity 1 33 0 1752 267 98 82 chr12 86723283 86724612 -57557877 + HAL1 LINE L1 756 2105 -402 1145 180 31 27 chr12 86724704 86724960 -57557529 - L1PA16 LINE L1 -2 6164 5908 658 278 15 45 chr12 86725044 86725286 -57557203 + MLT1H LTR MaLR 124 365 -227 181 143 114 0 chr12 86725617 86725652 -57556837 - L2 LINE L2 -12 3301 3263 1235 203 102 0 chr12 86728276 86728391 -57554098 + AluJo SINE Alu 1 103 -209 218 32 32 0 chr12 86728391 86728422 -57554067 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1235 203 102 0 chr12 86728422 86728572 -57553917 + AluJo SINE Alu 103 293 -19 998 205 34 0 chr12 86728810 86729015 -57553474 + MER20 DNA MER1_type 4 215 -4 23 54 0 0 chr12 86729274 86729311 -57553178 + AT_rich Low_complexity Low_complexity 1 37 0 215 341 33 11 chr12 86729952 86730043 -57552446 - MIR3 SINE MIR 0 208 116 2005 129 25 0 chr12 86730313 86730593 -57551896 + AluSx SINE Alu 1 287 -25 256 305 0 0 chr12 86730624 86730683 -57551806 - Charlie8 DNA MER1_type -999 1418 1360 697 345 129 15 chr12 86731880 86732222 -57550267 + L2 LINE L2 2892 3272 0 216 179 0 0 chr12 86732222 86732261 -57550228 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 7509 91 5 2 chr12 86732263 86733375 -57549114 + L1MA1 LINE L1 5182 6298 -4 213 214 0 0 chr12 86733743 86733785 -57548704 + (CATA)n Simple_repeat Simple_repeat 2 43 0 359 348 163 16 chr12 86735135 86735451 -57547038 - L2 LINE L2 -212 3060 2719 23 33 0 0 chr12 86735761 86735791 -57546698 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr12 86736160 86736180 -57546309 + (TG)n Simple_repeat Simple_repeat 2 21 0 1305 70 5 32 chr12 86736258 86736278 -57546211 - MER75B DNA T2_type -272 232 213 1993 126 24 0 chr12 86736278 86736572 -57545917 + AluSx SINE Alu 1 301 -11 1305 70 5 32 chr12 86736572 86736738 -57545751 - MER75B DNA T2_type -291 213 51 422 152 15 0 chr12 86736794 86736860 -57545629 - MER75B DNA T2_type -172 71 5 2308 304 55 29 chr12 86737138 86738340 -57544149 + L2 LINE L2 2080 3308 -5 199 328 60 0 chr12 86738753 86738820 -57543669 - L2 LINE L2 -615 2699 2629 4733 197 16 36 chr12 86738828 86740014 -57542475 + L1MA6 LINE L1 2768 3929 -2217 4071 167 89 54 chr12 86740012 86740983 -57541506 + L1MA6 LINE L1 5296 6300 0 * 208 312 123 43 chr12 86741705 86741843 -57540646 + L2 LINE L2 3113 3261 -11 1434 269 160 72 chr12 86741967 86742498 -57539991 - MER34 LTR ERV1 0 565 3 1574 286 66 74 chr12 86742830 86743839 -57538650 - L2 LINE L2 0 3313 2311 2020 129 0 3 chr12 86744141 86744428 -57538061 + AluSx SINE Alu 2 287 -25 32 26 0 0 chr12 86744428 86744467 -57538022 + AT_rich Low_complexity Low_complexity 1 39 0 536 262 169 22 chr12 86744492 86744717 -57537772 - MIR SINE MIR -4 258 1 865 152 5 87 chr12 86746160 86746336 -57536153 + AluJo SINE Alu 24 186 -126 613 167 53 0 chr12 86746336 86746468 -57536021 + L1MA9 LINE L1 6168 6306 -6 310 191 222 71 chr12 86746478 86746604 -57535885 + MER69 DNA AcHobo 143 287 -939 * 2769 207 83 50 chr12 86746593 86747173 -57535316 + MER69 DNA AcHobo 1459 2089 -437 1943 154 0 16 chr12 86747173 86747478 -57535011 + AluJb SINE Alu 2 301 -11 2769 207 83 50 chr12 86747478 86747916 -57534573 + MER69 DNA AcHobo 2089 2511 -15 216 0 0 0 chr12 86748372 86748396 -57534093 + (CAT)n Simple_repeat Simple_repeat 2 25 0 1625 142 30 0 chr12 86748568 86748835 -57533654 + LTR26E LTR ERV1 1 275 -347 1725 196 58 92 chr12 86748838 86749339 -57533150 + LTR26E LTR ERV1 138 621 -1 249 109 0 0 chr12 86750534 86750580 -57531909 + (A)n Simple_repeat Simple_repeat 1 46 0 1342 187 74 58 chr12 86752982 86753292 -57529197 - MSTC LTR MaLR -113 315 1 345 283 0 0 chr12 86753326 86753344 -57529145 - L1PB4 LINE L1 0 6156 6139 4150 153 87 51 chr12 86753344 86753911 -57528578 - L1MA4A LINE L1 -35 6268 5723 2012 143 3 31 chr12 86753911 86754232 -57528257 + AluSx SINE Alu 1 312 0 4150 153 87 51 chr12 86754232 86754900 -57527589 - L1MA4A LINE L1 -580 5723 4985 2033 113 7 4 chr12 86754901 86755175 -57527314 - AluSg SINE Alu -13 297 23 224 77 26 0 chr12 86755175 86755214 -57527275 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1195 195 39 47 chr12 86755216 86755472 -57527017 - AluJb SINE Alu -32 280 27 26 50 0 0 chr12 86755476 86755516 -57526973 + AT_rich Low_complexity Low_complexity 1 40 0 6282 206 34 17 chr12 86755545 86756385 -57526104 - L1MA4A LINE L1 -2182 3964 3087 2134 122 0 6 chr12 86756385 86756696 -57525793 - AluSg SINE Alu -1 309 1 6282 206 34 17 chr12 86756696 86757334 -57525155 - L1MA4A LINE L1 -3059 3087 2461 1934 150 29 40 chr12 86757543 86757922 -57524567 + THE1C LTR MaLR 1 375 0 302 218 0 0 chr12 86758320 86758375 -57524114 + MIR SINE MIR 186 240 -22 3875 181 17 60 chr12 86758378 86758946 -57523543 - MER54A LTR ERVL 0 901 375 2577 90 11 19 chr12 86758946 86759313 -57523176 + THE1B LTR MaLR 1 364 0 3875 181 17 60 chr12 86759313 86759549 -57522940 - MER54A LTR ERVL -526 375 131 1497 276 104 13 chr12 86759670 86760133 -57522356 + MLT1H LTR MaLR 12 516 -33 330 239 0 0 chr12 86760900 86760967 -57521522 + MER94 DNA DNA 6 72 -62 23 0 0 0 chr12 86761959 86761982 -57520507 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr12 86762589 86762614 -57519875 + (CA)n Simple_repeat Simple_repeat 1 25 0 1997 188 48 13 chr12 86762702 86763080 -57519409 + MER57A LTR ERV1 8 398 -5 2384 174 138 121 chr12 86763087 86763386 -57519103 + MER57A-int LTR ERV1 1 293 -7244 199 203 78 31 chr12 86763386 86763450 -57519039 + L3 LINE CR1 1297 1363 -214 2384 174 138 121 chr12 86763450 86763899 -57518590 + MER57A-int LTR ERV1 293 826 -6711 2379 77 42 152 chr12 86763899 86764393 -57518096 + MLT2A1 LTR ERVL 1 440 -4 388 113 48 0 chr12 86764663 86764725 -57517764 + MER34C LTR ERV1 160 224 -361 2526 79 122 10 chr12 86764766 86765169 -57517320 - LTR7 LTR ERV1 -2 448 1 2246 102 70 14 chr12 86765169 86765540 -57516949 - HERVH LTR ERV1 0 7713 7322 1385 124 18 5 chr12 86765538 86765755 -57516734 - HERVH LTR ERV1 -1894 5819 5600 * 4349 125 0 0 chr12 86765756 86766418 -57516071 - HERVH LTR ERV1 -2564 5149 4488 3393 80 4 6 chr12 86766420 86766923 -57515566 - HERVH LTR ERV1 -3720 3993 3492 * 19012 92 60 37 chr12 86766913 86770129 -57512360 - HERVH LTR ERV1 -4423 3290 1 2518 77 121 15 chr12 86770131 86770536 -57511953 - LTR7 LTR ERV1 -2 448 1 318 197 94 115 chr12 86770646 86770890 -57511599 + LTR49-int LTR ERV1 1097 1180 -3691 389 220 22 0 chr12 86770979 86771070 -57511419 + LTR49-int LTR ERV1 3248 3340 -2991 5795 57 45 15 chr12 86771345 86772101 -57510388 + LTR17 LTR ERV1 2 780 0 251 179 60 0 chr12 86772120 86772187 -57510302 + LTR49-int LTR ERV1 2424 2494 -2377 3539 192 41 69 chr12 86772255 86773612 -57508877 + LTR49-int LTR ERV1 1925 4669 -1662 1451 225 64 8 chr12 86773613 86773986 -57508503 + MER21B LTR ERV1 457 850 -13 946 233 92 4 chr12 86774726 86774954 -57507535 + MIR SINE MIR 11 258 -4 411 204 174 0 chr12 86775185 86775283 -57507206 + L2 LINE L2 3198 3312 -1 29 47 0 0 chr12 86775469 86775512 -57506977 + AT_rich Low_complexity Low_complexity 1 43 0 243 214 71 0 chr12 86775843 86775899 -57506590 - L2 LINE L2 0 3313 3254 23 54 0 0 chr12 86777391 86777428 -57505061 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr12 86778605 86778633 -57503856 + AT_rich Low_complexity Low_complexity 1 28 0 282 263 7 25 chr12 86780266 86780418 -57502071 - MIR SINE MIR -5 257 65 1548 141 5 0 chr12 86780458 86780678 -57501811 - AluSx SINE Alu -91 221 1 442 219 34 122 chr12 86780999 86781204 -57501285 + MLT1D LTR MaLR 1 187 -318 314 198 11 66 chr12 86781204 86781295 -57501194 + L1M4 LINE L1 2890 2975 -3171 342 206 31 0 chr12 86781301 86781398 -57501091 + L1M4 LINE L1 3047 3146 -3000 1786 232 10 61 chr12 86781410 86781514 -57500975 + L1M4 LINE L1 3128 3236 -2910 701 216 0 15 chr12 86781514 86781648 -57500841 + FLAM_A SINE Alu 2 133 0 1786 232 10 61 chr12 86781648 86781855 -57500634 + L1M4 LINE L1 3236 3452 -2694 2514 83 3 0 chr12 86781855 86782167 -57500322 + AluSp SINE Alu 1 313 0 1786 232 10 61 chr12 86782167 86782540 -57499949 + L1M4 LINE L1 3452 3778 -2368 237 139 0 0 chr12 86782711 86782754 -57499735 + (TA)n Simple_repeat Simple_repeat 2 44 0 252 184 40 40 chr12 86782982 86783058 -57499431 + MLT1D LTR MaLR 219 294 -332 254 133 0 50 chr12 86783152 86783212 -57499277 - L1MA7 LINE L1 0 6291 6235 4413 152 32 39 chr12 86783246 86783546 -57498943 - L1MA7 LINE L1 -51 6240 5940 2280 102 7 0 chr12 86783546 86783841 -57498648 - AluSg SINE Alu -13 297 1 4413 152 32 39 chr12 86783841 86784315 -57498174 - L1MA7 LINE L1 -351 5940 5465 726 167 0 51 chr12 86784315 86784453 -57498036 - FLAM_A SINE Alu -2 131 1 4413 152 32 39 chr12 86784453 86785348 -57497141 - L1MA7 LINE L1 -826 5465 4581 379 202 11 22 chr12 86785349 86785438 -57497051 + MLT1E2 LTR MaLR 539 626 0 326 298 0 58 chr12 86785585 86785706 -57496783 + MIR SINE MIR 15 128 -134 342 19 0 62 chr12 86785707 86785730 -57496759 - L1M1 LINE L1 -694 5610 5587 4144 87 33 11 chr12 86785730 86786188 -57496301 - L1MA2 LINE L1 0 6304 5828 1833 160 0 48 chr12 86786188 86786500 -57495989 - AluSx SINE Alu -14 298 2 4144 87 33 11 chr12 86786500 86786654 -57495835 - L1MA2 LINE L1 -476 5828 5679 342 19 0 62 chr12 86786654 86786699 -57495790 - L1M1 LINE L1 -717 5587 5552 489 267 22 15 chr12 86786699 86786834 -57495655 + MIR SINE MIR 122 257 -5 1687 77 8 0 chr12 86787343 86787577 -57494912 + THE1A LTR MaLR 1 236 -119 1179 135 0 0 chr12 86787580 86787750 -57494739 + AluSg/x SINE Alu 138 307 -5 705 133 75 0 chr12 86787751 86787871 -57494618 + THE1A LTR MaLR 227 355 0 2580 52 10 0 chr12 86788711 86789017 -57493472 - AluY SINE Alu -2 309 1 1172 284 110 16 chr12 86789446 86790138 -57492351 + L2 LINE L2 2552 3313 0 2603 68 0 0 chr12 86790141 86790452 -57492037 - AluY SINE Alu 0 311 1 1890 133 68 0 chr12 86790620 86790913 -57491576 - AluSq SINE Alu 0 313 1 4245 161 17 51 chr12 86791525 86792042 -57490447 - L1MA7 LINE L1 0 6291 5821 405 0 0 0 chr12 86792042 86792087 -57490402 + (TG)n Simple_repeat Simple_repeat 2 46 0 4245 161 17 51 chr12 86792087 86792534 -57489955 - L1MA7 LINE L1 -470 5821 5360 489 322 140 6 chr12 86792672 86792843 -57489646 + MER91A DNA MER1_type 1 194 -2 234 174 0 0 chr12 86793038 86793084 -57489405 + (TA)n Simple_repeat Simple_repeat 1 46 0 219 69 0 0 chr12 86793138 86793167 -57489322 + (CTG)n Simple_repeat Simple_repeat 1 29 0 225 0 0 0 chr12 86794099 86794124 -57488365 + (A)n Simple_repeat Simple_repeat 1 25 0 2041 129 3 19 chr12 86794181 86794499 -57487990 - AluSq SINE Alu 0 313 1 372 322 98 70 chr12 86794538 86794668 -57487821 + L1ME LINE L1 5319 5444 -677 2423 69 0 3 chr12 86794668 86794959 -57487530 - AluY SINE Alu -21 290 1 372 322 98 70 chr12 86794959 86795185 -57487304 + L1ME LINE L1 5444 5685 -436 1502 183 17 43 chr12 86797767 86798068 -57484421 + AluJo SINE Alu 1 293 -19 1885 165 3 3 chr12 86798410 86798713 -57483776 - AluSx SINE Alu -7 305 3 324 356 25 12 chr12 86799307 86799467 -57483022 - MIR3 SINE MIR -7 201 40 207 0 0 0 chr12 86799794 86799817 -57482672 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 631 50 0 0 chr12 86799819 86799899 -57482590 - AluYa5/8 SINE Alu -25 286 207 280 280 40 30 chr12 86800079 86800179 -57482310 - MIR SINE MIR -150 112 12 262 368 26 8 chr12 86800259 86800376 -57482113 + MER5B DNA MER1_type 1 119 -59 1163 103 63 49 chr12 86800677 86800900 -57481589 + MER44D DNA MER2_type 34 529 -80 896 279 18 5 chr12 86801256 86801478 -57481011 + MIR SINE MIR 35 259 -3 252 0 0 0 chr12 86802278 86802306 -57480183 + (CA)n Simple_repeat Simple_repeat 2 29 0 228 300 11 33 chr12 86802806 86802896 -57479593 + MIR3 SINE MIR 5 92 -116 355 225 88 0 chr12 86802907 86802987 -57479502 - MER81 DNA DNA -25 89 3 1123 119 11 0 chr12 86803051 86803227 -57479262 - Tigger1 DNA MER2_type -180 2238 2061 4300 172 104 16 chr12 86803237 86803676 -57478813 + MER52A LTR ERV1 1 400 -1355 2166 114 30 43 chr12 86803676 86803924 -57478565 - THE1B LTR MaLR -1 363 120 2095 145 3 0 chr12 86803924 86804235 -57478254 + AluSq SINE Alu 2 313 0 2166 114 30 43 chr12 86804235 86804354 -57478135 - THE1B LTR MaLR -244 120 1 4300 172 104 16 chr12 86804354 86805389 -57477100 + MER52A LTR ERV1 400 1755 0 5826 205 19 4 chr12 86805389 86806759 -57475730 + L1M3 LINE L1 2855 4245 -1901 22 0 0 0 chr12 86806768 86806790 -57475699 + AT_rich Low_complexity Low_complexity 1 22 0 1987 145 0 0 chr12 86808179 86808469 -57474020 - AluSx SINE Alu -22 290 1 238 273 76 0 chr12 86808544 86808610 -57473879 + L2 LINE L2 3204 3274 -39 254 299 23 109 chr12 86808678 86808757 -57473732 + MIR SINE MIR 92 176 -86 2267 77 0 0 chr12 86808757 86809031 -57473458 + AluY SINE Alu 6 279 -32 225 0 0 0 chr12 86809031 86809056 -57473433 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 254 299 23 109 chr12 86809056 86809149 -57473340 + MIR SINE MIR 174 250 -12 312 377 30 6 chr12 86809436 86809603 -57472886 + L2 LINE L2 2758 2928 -386 242 236 0 0 chr12 86809648 86809703 -57472786 + L1M3 LINE L1 5389 5443 -737 350 279 95 44 chr12 86809775 86810101 -57472388 + L1ME LINE L1 5539 5809 -312 789 278 27 0 chr12 86810164 86810401 -57472088 - MIR SINE MIR 0 262 19 195 42 0 0 chr12 86810418 86810442 -57472047 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 191 36 36 0 chr12 86810447 86810475 -57472014 + (TG)n Simple_repeat Simple_repeat 1 29 0 263 359 111 15 chr12 86811518 86811716 -57470773 + L2 LINE L2 2632 2848 -466 294 278 133 7 chr12 86811865 86812016 -57470473 - MIR SINE MIR -1 261 92 22 80 0 0 chr12 86812259 86812309 -57470180 + AT_rich Low_complexity Low_complexity 1 50 0 818 259 88 81 chr12 86812333 86812812 -57469677 + L2 LINE L2 2832 3313 0 742 244 129 0 chr12 86814485 86814678 -57467811 + MER20 DNA MER1_type 2 219 0 214 339 114 65 chr12 86814927 86815314 -57467175 + L2 LINE L2 2442 2847 -467 283 378 34 7 chr12 86817264 86817412 -57465077 - MIR SINE MIR -11 251 100 219 340 188 43 chr12 86817754 86818034 -57464455 + L2 LINE L2 2752 3069 -244 40 0 0 0 chr12 86818202 86818242 -57464247 + AT_rich Low_complexity Low_complexity 1 40 0 429 250 121 8 chr12 86818844 86818976 -57463513 - L2 LINE L2 -5 3308 3162 202 146 18 55 chr12 86821077 86821132 -57461357 + GA-rich Low_complexity Low_complexity 2 54 0 435 274 0 9 chr12 86821958 86822071 -57460418 + MER81 DNA DNA 3 114 0 21 57 0 0 chr12 86822141 86822176 -57460313 + AT_rich Low_complexity Low_complexity 1 35 0 487 364 78 5 chr12 86822178 86822395 -57460094 + MIR SINE MIR 14 246 -16 29 47 0 0 chr12 86822532 86822575 -57459914 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr12 86823134 86823162 -57459327 + AT_rich Low_complexity Low_complexity 1 28 0 301 346 23 8 chr12 86823466 86823599 -57458890 - MIR SINE MIR -50 212 78 233 29 0 29 chr12 86823759 86823794 -57458695 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 317 305 0 0 chr12 86826703 86826785 -57455704 + GA-rich Low_complexity Low_complexity 1 82 0 220 254 18 0 chr12 86828313 86828368 -57454121 + MER5A DNA MER1_type 50 105 -84 255 167 0 0 chr12 86828421 86828463 -57454026 + MER5B DNA MER1_type 2 43 -135 272 255 128 0 chr12 86828933 86829035 -57453454 - MIR SINE MIR -7 255 141 335 253 65 39 chr12 86829740 86829894 -57452595 + L1ME4a LINE L1 5964 6121 0 697 267 116 12 chr12 86830226 86830477 -57452012 - MER93b LTR ERV1 0 373 97 294 29 0 0 chr12 86830599 86830634 -57451855 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 205 150 0 0 chr12 86831857 86831870 -57450619 + (TA)n Simple_repeat Simple_repeat 2 14 -27 189 0 0 0 chr12 86831870 86831891 -57450598 + (TG)n Simple_repeat Simple_repeat 2 22 0 205 150 0 0 chr12 86831891 86831917 -57450572 + (TA)n Simple_repeat Simple_repeat 13 41 0 215 326 116 36 chr12 86833312 86833450 -57449039 - L2 LINE L2 -11 3261 3113 185 333 18 61 chr12 86833964 86834078 -57448411 + L2 LINE L2 2397 2505 -809 4112 163 88 55 chr12 86834172 86835145 -57447344 - L1MA6 LINE L1 0 6300 5296 * 4825 198 16 36 chr12 86835141 86836329 -57446160 - L1MA6 LINE L1 -2215 3931 2768 201 328 60 0 chr12 86836337 86836404 -57446085 + L2 LINE L2 2629 2699 -615 2322 304 55 29 chr12 86836817 86838019 -57444470 - L2 LINE L2 -5 3308 2080 417 152 15 0 chr12 86838297 86838363 -57444126 + MER75B DNA T2_type 5 71 -172 1314 70 5 32 chr12 86838419 86838585 -57443904 + MER75B DNA T2_type 51 213 -291 1960 126 24 0 chr12 86838585 86838879 -57443610 - AluSx SINE Alu -11 301 1 1314 70 5 32 chr12 86838879 86838899 -57443590 + MER75B DNA T2_type 213 232 -11 180 0 0 0 chr12 86838977 86838997 -57443492 + (CA)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr12 86839366 86839396 -57443093 + AT_rich Low_complexity Low_complexity 1 30 0 342 351 163 16 chr12 86839706 86840022 -57442467 + L2 LINE L2 2719 3060 -212 213 214 0 0 chr12 86841372 86841414 -57441075 + (TATG)n Simple_repeat Simple_repeat 2 43 0 3585 56 26 4 chr12 86841685 86842433 -57440056 - L1P2 LINE L1 -419 5735 4976 356 312 45 84 chr12 86842611 86842651 -57439838 - L3 LINE CR1 -608 969 929 575 88 0 0 chr12 86842651 86842731 -57439758 + MADE1 DNA Mariner 1 80 0 356 312 45 84 chr12 86842731 86843001 -57439488 - L3 LINE CR1 -648 929 671 614 171 9 0 chr12 86843121 86843226 -57439263 + AluSg/x SINE Alu 195 300 -12 1635 236 81 27 chr12 86843778 86844257 -57438232 + MLT1D LTR MaLR 1 505 0 390 21 0 0 chr12 86844378 86844425 -57438064 + (CAT)n Simple_repeat Simple_repeat 2 48 0 361 284 0 0 chr12 86844454 86844542 -57437947 + L2 LINE L2 3225 3312 -1 864 223 10 21 chr12 86845805 86845998 -57436491 + MIR SINE MIR 38 228 -34 344 252 81 18 chr12 86845996 86846107 -57436382 - L2 LINE L2 -7 3306 3189 * 579 230 72 13 chr12 86846712 86846864 -57435625 - L1MD2 LINE L1 -27 6332 6172 860 277 143 16 chr12 86847333 86847698 -57434791 - L3 LINE CR1 -1 1576 1166 569 161 36 9 chr12 86847759 86847871 -57434618 + AluSg/x SINE Alu 196 310 0 684 67 0 0 chr12 86847883 86847973 -57434516 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 409 386 59 22 chr12 86847994 86848401 -57434088 - L3 LINE CR1 -538 1039 618 21 0 0 0 chr12 86848963 86848984 -57433505 + AT_rich Low_complexity Low_complexity 1 21 0 182 349 63 0 chr12 86849255 86849318 -57433171 + MIR SINE MIR 39 105 -103 257 339 110 8 chr12 86850230 86850348 -57432141 - MIR SINE MIR -70 192 63 28 0 0 0 chr12 86850517 86850545 -57431944 + AT_rich Low_complexity Low_complexity 1 28 0 2394 73 3 0 chr12 86851509 86851810 -57430679 + AluY SINE Alu 1 302 -9 263 296 83 9 chr12 86852855 86852963 -57429526 + L2 LINE L2 3153 3268 -4 207 0 0 0 chr12 86853918 86853941 -57428548 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 197 176 0 0 chr12 86855496 86855530 -57426959 - L2 LINE L2 0 3313 3280 374 300 86 91 chr12 86856254 86856464 -57426025 + L2 LINE L2 2889 3097 -175 571 310 43 0 chr12 86856712 86856899 -57425590 + MIR SINE MIR 2 196 -66 1212 142 58 0 chr12 86857062 86857267 -57425222 + MER20 DNA MER1_type 3 219 0 316 356 107 14 chr12 86857409 86857625 -57424864 - MIR SINE MIR -11 251 16 186 222 111 102 chr12 86857962 86858070 -57424419 + MIR3 SINE MIR 6 114 -94 182 284 14 68 chr12 86858551 86858625 -57423864 - L2 LINE L2 0 3272 3203 216 224 17 0 chr12 86859094 86859152 -57423337 + (TTA)n Simple_repeat Simple_repeat 3 61 0 250 271 94 0 chr12 86859626 86859711 -57422778 + MLT1J LTR MaLR 400 492 -19 1950 213 59 33 chr12 86859902 86860251 -57422238 + L1ME1 LINE L1 5169 5530 -636 2036 116 17 7 chr12 86860251 86860543 -57421946 - AluSx SINE Alu -13 299 5 1950 213 59 33 chr12 86860543 86860841 -57421648 + L1ME1 LINE L1 5530 5819 -347 739 171 0 0 chr12 86860846 86860969 -57421520 + FLAM_C SINE Alu 1 123 -20 971 261 44 24 chr12 86860975 86861316 -57421173 + L1ME1 LINE L1 5810 6157 -9 25 51 0 0 chr12 86861884 86861923 -57420566 + AT_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr12 86862024 86862069 -57420420 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr12 86862481 86862503 -57419986 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr12 86863389 86863413 -57419076 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 540 142 0 83 chr12 86865602 86865722 -57416767 - MER53 DNA DNA -1 188 79 376 313 30 15 chr12 86865900 86866031 -57416458 - L2 LINE L2 -955 2359 2227 292 293 38 0 chr12 86866286 86866419 -57416070 - L1ME4a LINE L1 -15 6106 5969 597 292 103 10 chr12 86866471 86866772 -57415717 - L1MC4a LINE L1 -1922 5886 5558 2373 207 29 16 chr12 86868898 86869414 -57413075 + MER82 DNA MER2_type 5 527 -126 757 231 12 0 chr12 86873089 86873262 -57409227 - MER5B DNA MER1_type -3 175 1 509 265 113 93 chr12 86873262 86873511 -57408978 - MLT1L LTR MaLR -54 561 318 1474 191 53 0 chr12 86873511 86873793 -57408696 - AluJo SINE Alu -10 302 6 509 265 113 93 chr12 86873793 86874067 -57408422 - MLT1L LTR MaLR -297 318 28 2093 118 3 0 chr12 86874838 86875126 -57407363 + AluSp SINE Alu 1 289 -24 279 164 0 0 chr12 86875685 86875746 -57406743 + (TA)n Simple_repeat Simple_repeat 1 61 0 250 252 36 45 chr12 86876494 86876605 -57405884 + L3 LINE CR1 1120 1229 -348 410 286 71 14 chr12 86876740 86876880 -57405609 - MER91B DNA MER1_type -5 185 38 21 36 0 0 chr12 86878416 86878444 -57404045 + AT_rich Low_complexity Low_complexity 1 28 0 1981 156 0 9 chr12 86879799 86880114 -57402375 + AluJo SINE Alu 1 312 0 210 242 0 15 chr12 86880356 86880422 -57402067 + (TTTG)n Simple_repeat Simple_repeat 2 66 0 2231 77 0 55 chr12 86881253 86881580 -57400909 + AluY SINE Alu 1 309 -2 347 259 120 9 chr12 86881646 86881754 -57400735 + MIR SINE MIR 23 142 -66 213 370 33 0 chr12 86882267 86882359 -57400130 - L2 LINE L2 -11 3302 3208 207 0 0 0 chr12 86882604 86882627 -57399862 + (CA)n Simple_repeat Simple_repeat 2 24 0 336 94 0 0 chr12 86882627 86882680 -57399809 + (GA)n Simple_repeat Simple_repeat 1 53 0 903 287 62 39 chr12 86883127 86883393 -57399096 + L1ME2 LINE L1 5328 5586 -578 2410 92 0 0 chr12 86883393 86883697 -57398792 + AluSx SINE Alu 1 304 -8 903 287 62 39 chr12 86883697 86884040 -57398449 + L1ME2 LINE L1 5586 5951 -213 225 154 0 0 chr12 86884161 86884200 -57398289 + GA-rich Low_complexity Low_complexity 3 41 0 690 143 0 0 chr12 86884985 86885090 -57397399 - LTR12 LTR ERV1 -129 585 481 250 323 10 0 chr12 86885091 86885190 -57397299 - LTR30 LTR ERV1 -79 643 544 1513 64 3 217 chr12 86885195 86885541 -57396948 - LTR12 LTR ERV1 -442 272 1 239 170 0 57 chr12 86886148 86886201 -57396288 + MER66B LTR ERV1 295 344 -142 261 0 0 0 chr12 86886204 86886233 -57396256 + (A)n Simple_repeat Simple_repeat 1 29 0 459 35 0 0 chr12 86887309 86887366 -57395123 + (CA)n Simple_repeat Simple_repeat 2 58 0 40 49 0 0 chr12 86888080 86888141 -57394348 + AT_rich Low_complexity Low_complexity 1 61 0 210 143 0 0 chr12 86888192 86888227 -57394262 + (TA)n Simple_repeat Simple_repeat 1 35 0 397 374 6 0 chr12 86888475 86888654 -57393835 - L3 LINE CR1 -310 1267 1088 360 299 6 35 chr12 86888757 86888835 -57393654 - L1M4 LINE L1 -1879 4267 4188 2799 13 0 6 chr12 86888835 86889148 -57393341 - AluYa5 SINE Alu 0 311 1 360 299 6 35 chr12 86889148 86889243 -57393246 - L1M4 LINE L1 -1958 4188 4099 340 279 44 97 chr12 86889299 86889525 -57392964 - MIR SINE MIR -1 261 48 234 169 28 14 chr12 86889619 86889690 -57392799 + CT-rich Low_complexity Low_complexity 3 74 0 237 315 103 79 chr12 86889758 86889961 -57392528 - L3 LINE CR1 -760 817 610 879 322 24 32 chr12 86890860 86891236 -57391253 - MLT1I LTR MaLR 0 409 37 1311 280 188 31 chr12 86893484 86894330 -57388159 + L2 LINE L2 2235 3224 -89 259 348 11 0 chr12 86896362 86896451 -57386038 + L2 LINE L2 3136 3225 -47 465 191 0 0 chr12 86897395 86897484 -57385005 + AluJ/FRAM SINE Alu 217 305 -7 582 372 58 11 chr12 86897704 86898083 -57384406 + L2 LINE L2 2572 2968 -346 583 317 50 51 chr12 86898104 86898567 -57383922 - L2 LINE L2 -39 3233 2773 243 254 0 56 chr12 86898806 86898877 -57383612 + L2 LINE L2 3245 3311 -2 635 269 46 34 chr12 86899110 86899214 -57383275 + MER5B DNA MER1_type 2 110 -68 776 191 11 38 chr12 86899214 86899397 -57383092 - MER5B DNA MER1_type 0 178 1 635 269 46 34 chr12 86899397 86899467 -57383022 + MER5B DNA MER1_type 110 178 0 455 291 11 56 chr12 86899478 86899657 -57382832 - MER5A DNA MER1_type -3 186 16 385 235 84 14 chr12 86899848 86899955 -57382534 + MER5B DNA MER1_type 18 139 -50 792 183 0 0 chr12 86901029 86901160 -57381329 - Tigger7 DNA MER2_type -558 147 17 211 333 22 44 chr12 86901215 86901305 -57381184 - MER5A DNA MER1_type -101 88 1 412 312 16 51 chr12 86901389 86901582 -57380907 - MIR SINE MIR -73 135 2 395 328 25 44 chr12 86902305 86902509 -57379980 + MLT1J LTR MaLR 234 433 -78 303 341 77 55 chr12 86902653 86902873 -57379616 - L2 LINE L2 -244 3069 2845 1928 113 15 0 chr12 86904109 86904383 -57378106 + AluSx SINE Alu 22 299 -13 11410 201 14 18 chr12 86904460 86906326 -57376163 - L1P LINE L1 -915 5231 3374 2232 48 4 0 chr12 86906326 86906596 -57375893 - AluY SINE Alu 0 311 41 11410 201 14 18 chr12 86906596 86907298 -57375191 - L1P LINE L1 -2772 3374 2671 3860 207 0 9 chr12 86908582 86909436 -57373053 - L1 LINE L1 -1150 4996 4151 317 301 64 81 chr12 86909598 86909834 -57372655 - L2 LINE L2 -33 3239 3008 345 261 152 14 chr12 86909843 86909981 -57372508 - MIR3 SINE MIR -5 203 47 315 265 248 56 chr12 86911381 86911832 -57370657 + L1M2 LINE L1 525 1124 -5725 286 326 0 10 chr12 86912203 86912301 -57370188 + GA-rich Low_complexity Low_complexity 2 98 0 266 268 12 71 chr12 86913802 86914018 -57368471 + MIR SINE MIR 56 220 -42 201 337 61 10 chr12 86914031 86914129 -57368360 - L2 LINE L2 0 3272 3170 194 246 43 43 chr12 86914507 86914576 -57367913 + L2 LINE L2 3208 3276 -37 406 271 106 0 chr12 86915056 86915207 -57367282 - MIR SINE MIR -6 256 90 2098 129 3 0 chr12 86915266 86915575 -57366914 - AluSx SINE Alu -2 310 1 217 168 42 14 chr12 86915675 86915818 -57366671 + (TA)n Simple_repeat Simple_repeat 2 148 0 523 238 92 32 chr12 86916399 86916584 -57365905 - L2 LINE L2 -5 3308 3113 2274 80 10 7 chr12 86917006 86917306 -57365183 + AluSp SINE Alu 5 305 -8 23 0 0 0 chr12 86917309 86917332 -57365157 + AT_rich Low_complexity Low_complexity 1 23 0 242 267 93 47 chr12 86917658 86917744 -57364745 - L2 LINE L2 -5 3267 3178 753 282 10 0 chr12 86917792 86917998 -57364491 - MER63A DNA MER1_type 0 210 3 219 139 0 0 chr12 86918486 86918522 -57363967 + (TTC)n Simple_repeat Simple_repeat 2 37 0 25 31 0 0 chr12 86918538 86918570 -57363919 + AT_rich Low_complexity Low_complexity 1 32 0 281 286 157 7 chr12 86919982 86920129 -57362360 - L1MC/D LINE L1 -1944 5864 5696 2026 102 0 11 chr12 86920544 86920828 -57361661 + AluSc SINE Alu 9 289 -20 703 187 100 26 chr12 86920828 86921058 -57361431 - L1MA8 LINE L1 -28 6263 6017 210 271 59 59 chr12 86921921 86922006 -57360483 - L2 LINE L2 -1 3312 3228 1120 326 116 44 chr12 86922108 86923188 -57359301 - L2 LINE L2 -196 3076 1909 342 0 0 0 chr12 86923289 86923327 -57359162 + (TG)n Simple_repeat Simple_repeat 2 39 0 294 174 43 9 chr12 86923327 86923442 -57359047 + (TA)n Simple_repeat Simple_repeat 1 119 0 216 0 0 0 chr12 86923469 86923493 -57358996 + (GA)n Simple_repeat Simple_repeat 2 25 0 231 114 0 0 chr12 86924030 86924065 -57358424 + (A)n Simple_repeat Simple_repeat 1 35 0 258 250 102 56 chr12 86924217 86924325 -57358164 - MIR SINE MIR -80 128 16 308 311 170 0 chr12 86924339 86924445 -57358044 + L2 LINE L2 3148 3271 -1 1771 130 3 45 chr12 86924456 86924748 -57357741 + AluJb SINE Alu 7 286 -26 29 0 0 0 chr12 86928055 86928084 -57354405 + AT_rich Low_complexity Low_complexity 1 29 0 1763 46 0 0 chr12 86928255 86928474 -57354015 + L1PA4 LINE L1 5934 6152 -3 1206 157 18 5 chr12 86928492 86928715 -57353774 + L1PA14 LINE L1 5936 6161 0 790 289 21 4 chr12 86929798 86930033 -57352456 + MIR SINE MIR 1 239 -23 395 38 19 0 chr12 86930653 86930706 -57351783 + (CA)n Simple_repeat Simple_repeat 1 54 0 200 361 85 15 chr12 86930853 86930983 -57351506 - L2 LINE L2 -2 3311 3173 349 311 81 19 chr12 86931540 86931701 -57350788 - MIR SINE MIR 0 262 92 187 333 0 0 chr12 86931815 86931848 -57350641 + T-rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr12 86932511 86932546 -57349943 + AT_rich Low_complexity Low_complexity 1 35 0 1623 164 45 0 chr12 86932779 86933084 -57349405 - AluJb SINE Alu 0 317 1 3167 181 63 83 chr12 86933091 86933493 -57348996 - L1MB7 LINE L1 0 6184 5776 2031 113 17 7 chr12 86933493 86933793 -57348696 - AluSx SINE Alu -9 303 1 3167 181 63 83 chr12 86933793 86933909 -57348580 - L1MB7 LINE L1 -408 5776 5659 1549 180 69 3 chr12 86933909 86934198 -57348291 - AluJo SINE Alu -4 308 1 3167 181 63 83 chr12 86934198 86934360 -57348129 - L1MB7 LINE L1 -525 5659 5495 1822 154 6 25 chr12 86934360 86934678 -57347811 - AluSx SINE Alu 0 312 1 3167 181 63 83 chr12 86934678 86934915 -57347574 - L1MB7 LINE L1 -689 5495 5283 582 179 27 0 chr12 86934936 86935048 -57347441 - L1MB7 LINE L1 -1209 4937 4823 1447 171 25 204 chr12 86935071 86935823 -57346666 - L1M4 LINE L1 -890 5754 5137 3385 148 73 0 chr12 86935840 86936416 -57346073 - MER39B LTR ERV1 -32 621 4 546 221 16 0 chr12 86936417 86936544 -57345945 - L1M4 LINE L1 -1519 5125 4997 4419 233 51 46 chr12 86936552 86936903 -57345586 - L1M4 LINE L1 -2606 4038 3690 2190 111 3 0 chr12 86936903 86937200 -57345289 - AluSc SINE Alu -11 298 1 4419 233 51 46 chr12 86937200 86939158 -57343331 - L1M4 LINE L1 -2954 3690 16 427 374 38 24 chr12 86939337 86939677 -57342812 + L2 LINE L2 2467 2811 -503 509 265 30 60 chr12 86939850 86940050 -57342439 + L2 LINE L2 3120 3313 0 1799 171 6 51 chr12 86940632 86940984 -57341505 + MER1B DNA MER1_type 2 337 0 5457 157 24 25 chr12 86941965 86943008 -57339481 - L1MC3 LINE L1 -4 7781 6740 1050 212 32 0 chr12 86943091 86943308 -57339181 - MER58A DNA MER1_type 0 224 1 260 301 0 0 chr12 86943342 86943415 -57339074 + GA-rich Low_complexity Low_complexity 2 74 0 1929 123 0 20 chr12 86943725 86944012 -57338477 + AluSg1 SINE Alu 3 284 -20 195 69 0 0 chr12 86944012 86944041 -57338448 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 22 0 0 0 chr12 86944076 86944098 -57338391 + AT_rich Low_complexity Low_complexity 1 22 0 438 151 67 67 chr12 86945303 86945422 -57337067 - LTR33A LTR ERVL 0 523 405 649 341 14 18 chr12 86945752 86945975 -57336514 - MIR SINE MIR -28 234 13 2295 193 40 7 chr12 86945976 86946421 -57336068 - MER66B LTR ERV1 0 486 27 320 331 60 11 chr12 86947140 86947324 -57335165 + LTR37B LTR ERV1 6 198 -270 587 227 94 35 chr12 86947370 86947626 -57334863 + LTR37B LTR ERV1 198 468 0 3005 244 73 32 chr12 86947690 86948519 -57333970 - Zaphod DNA AcHobo 0 4031 3137 2375 62 7 7 chr12 86948519 86948824 -57333665 - AluY SINE Alu -6 305 1 3005 244 73 32 chr12 86948824 86949180 -57333309 - Zaphod DNA AcHobo -894 3137 2797 506 278 98 8 chr12 86949693 86950019 -57332470 - Zaphod DNA AcHobo -1219 2812 2410 449 242 23 0 chr12 86950047 86950175 -57332314 - Zaphod DNA AcHobo -3279 752 622 1178 182 95 13 chr12 86950179 86950487 -57332002 - MER33 DNA MER1_type -1 323 1 989 272 118 17 chr12 86950487 86950886 -57331603 - Zaphod DNA AcHobo -3415 616 177 382 18 36 0 chr12 86951055 86951110 -57331379 + (TC)n Simple_repeat Simple_repeat 1 57 0 306 0 0 0 chr12 86951110 86951144 -57331345 + (TG)n Simple_repeat Simple_repeat 1 34 0 195 42 0 0 chr12 86951143 86951167 -57331322 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 3807 79 2 0 chr12 86951453 86951961 -57330528 - L1PA10 LINE L1 -9 6159 5651 2690 87 5 25 chr12 86951961 86952362 -57330127 + L1PA10 LINE L1 5265 5657 -511 37 69 0 0 chr12 86953251 86953323 -57329166 + AT_rich Low_complexity Low_complexity 1 72 0 222 219 0 0 chr12 86953360 86953401 -57329088 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 260 266 18 55 chr12 86953427 86953536 -57328953 - MIR SINE MIR -56 206 102 27 0 0 0 chr12 86954293 86954320 -57328169 + AT_rich Low_complexity Low_complexity 1 27 0 283 213 0 53 chr12 86954695 86954770 -57327719 + MIR SINE MIR 187 257 -5 209 292 182 19 chr12 86955546 86955700 -57326789 + L2 LINE L2 3040 3218 -95 192 77 0 0 chr12 86955762 86955788 -57326701 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1519 138 86 61 chr12 86956274 86956600 -57325889 + MER1B DNA MER1_type 1 334 -5 312 298 92 15 chr12 86956925 86957056 -57325433 - MLT1I LTR MaLR -20 389 249 3671 125 26 39 chr12 86957543 86958161 -57324328 + MER4B LTR ERV1 1 610 0 493 279 61 18 chr12 86958929 86959094 -57323395 - MIR SINE MIR 0 262 91 1879 137 7 3 chr12 86959547 86959831 -57322658 + AluSx SINE Alu 9 293 -19 258 194 28 14 chr12 86960244 86960316 -57322173 + CT-rich Low_complexity Low_complexity 2 74 0 228 253 42 0 chr12 86960279 86960374 -57322115 + (TTCA)n Simple_repeat Simple_repeat 2 100 0 * 553 67 0 22 chr12 86960374 86960463 -57322026 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 1983 137 3 0 chr12 86960475 86960760 -57321729 - AluSx SINE Alu -22 290 5 1446 253 38 36 chr12 86960784 86961338 -57321151 - Charlie2 DNA MER1_type -528 2334 1780 1209 253 55 3 chr12 86961403 86961747 -57320742 - Charlie2a DNA MER1_type -1922 940 579 228 240 40 13 chr12 86961896 86961971 -57320518 - L1 LINE L1 -2207 3939 3863 2248 63 40 0 chr12 86962000 86962299 -57320190 - AluY SINE Alu 0 311 1 253 302 78 39 chr12 86962349 86962478 -57320011 + MER20B DNA MER1_type 4 137 -646 6801 48 33 7 chr12 86962561 86963466 -57319023 - L1PA6 LINE L1 -6 6148 5232 4515 212 7 10 chr12 86963953 86964987 -57317502 - L1 LINE L1 -1150 4996 3966 2600 122 40 20 chr12 86965107 86965558 -57316931 - L1PB4 LINE L1 -309 5847 5388 22 35 0 0 chr12 86965710 86965739 -57316750 + AT_rich Low_complexity Low_complexity 1 29 0 2140 212 52 1 chr12 86965771 86966260 -57316229 - L1MA8 LINE L1 -1 6290 5781 228 70 23 23 chr12 86966229 86966272 -57316217 + L1MA8 LINE L1 5760 5802 -510 * 1328 133 18 0 chr12 86966272 86966497 -57315992 - Tigger4(Zombi) DNA MER2_type -1 2730 2502 911 105 0 0 chr12 86966791 86966915 -57315574 - AluSg/x SINE Alu -15 297 174 383 291 102 58 chr12 86967191 86967486 -57315003 - L1 LINE L1 -3618 2528 2221 1157 160 5 5 chr12 86968228 86968440 -57314049 + L1PA15 LINE L1 5954 6165 0 530 319 102 0 chr12 86968503 86968644 -57313845 + MIR SINE MIR 15 187 -75 425 18 0 18 chr12 86968644 86968699 -57313790 + (TG)n Simple_repeat Simple_repeat 2 55 0 530 319 102 0 chr12 86968699 86968773 -57313716 + MIR SINE MIR 187 252 -10 333 308 88 15 chr12 86969026 86969179 -57313310 + MIR3 SINE MIR 2 167 -41 5207 229 45 60 chr12 86970283 86971013 -57311476 - L1ME LINE L1 -703 5463 4723 1874 189 22 6 chr12 86971013 86971372 -57311117 - MLT1A1 LTR MaLR 0 365 1 5207 229 45 60 chr12 86971372 86971522 -57310967 - L1ME LINE L1 -1443 4723 4572 288 130 0 0 chr12 86971522 86971568 -57310921 + MADE1 DNA Mariner 1 46 -34 5207 229 45 60 chr12 86971568 86972662 -57309827 - L1ME LINE L1 -1594 4572 3473 645 186 7 57 chr12 86972875 86973015 -57309474 - FLAM_A SINE Alu 0 133 1 21 0 0 0 chr12 86973063 86973084 -57309405 + AT_rich Low_complexity Low_complexity 1 21 0 2175 109 6 3 chr12 86974039 86974350 -57308139 + AluSx SINE Alu 1 312 0 329 156 180 117 chr12 86975847 86975975 -57306514 - MER103 DNA DNA -30 136 1 1171 168 0 35 chr12 86976370 86976572 -57305917 + AluJo SINE Alu 12 206 -106 5230 138 11 35 chr12 86976573 86977650 -57304839 + L1PA16 LINE L1 5113 6166 0 1359 276 43 42 chr12 86977650 86978152 -57304337 + L2 LINE L2 2511 3011 -302 515 265 0 0 chr12 86978152 86978269 -57304220 + L2 LINE L2 3191 3307 -6 220 303 72 40 chr12 86978319 86978471 -57304018 - L2 LINE L2 -191 3081 2925 447 295 225 12 chr12 86978477 86978806 -57303683 - L2 LINE L2 -2 3311 2913 26 64 0 0 chr12 86979122 86979169 -57303320 + AT_rich Low_complexity Low_complexity 1 47 0 238 243 45 63 chr12 86979437 86979548 -57302941 - L1MEd LINE L1 -5359 760 652 1509 188 23 23 chr12 86979639 86979948 -57302541 - AluJb SINE Alu -3 309 1 364 269 70 65 chr12 86980141 86980327 -57302162 - L1MEd LINE L1 -5914 205 19 1789 176 48 6 chr12 86980412 86980742 -57301747 + MER7A DNA MER2_type 1 342 -4 393 296 85 42 chr12 86980906 86981166 -57301323 + L1MCc LINE L1 169 439 -5984 853 241 17 61 chr12 86981300 86981594 -57300895 + L1MCc LINE L1 745 1025 -5398 1128 176 77 4 chr12 86981691 86981924 -57300565 - MER58B DNA MER1_type -26 315 66 408 180 180 14 chr12 86982009 86982148 -57300341 + L1MCc LINE L1 2655 2816 -4306 1697 173 92 6 chr12 86982615 86982951 -57299538 + MLT1A1 LTR MaLR 1 365 0 1345 182 15 111 chr12 86982951 86983347 -57299142 - MLT1A2 LTR MaLR -16 358 1 357 132 0 0 chr12 86984210 86984263 -57298226 + MLT2B2 LTR ERVL 1 53 -501 1129 194 83 0 chr12 86984263 86984479 -57298010 + Tigger7 DNA MER2_type 1 234 -2253 435 171 38 29 chr12 86984480 86984585 -57297904 + Tigger7 DNA MER2_type 2382 2487 0 1992 209 65 22 chr12 86984585 86985030 -57297459 + MLT2B2 LTR ERVL 52 515 0 180 373 0 0 chr12 86985088 86985147 -57297342 - L2 LINE L2 -13 3259 3201 215 259 106 24 chr12 86985436 86985521 -57296968 + MIR SINE MIR 100 191 -71 339 330 0 0 chr12 86985546 86985649 -57296840 + MIR SINE MIR 160 262 0 314 360 22 29 chr12 86985831 86985967 -57296522 - MIR SINE MIR -108 154 20 796 268 34 21 chr12 86986015 86986254 -57296235 - MIR SINE MIR -3 259 18 343 348 76 33 chr12 86986445 86986721 -57295768 - L3 LINE CR1 -49 1528 1241 197 268 107 0 chr12 86986691 86986747 -57295742 - L2 LINE L2 -4 3268 3207 * 889 256 41 25 chr12 86987089 86987331 -57295158 - MIR SINE MIR -3 259 14 262 222 16 32 chr12 86987434 86987497 -57294992 - MIR SINE MIR -51 211 150 * 336 290 159 70 chr12 86987495 86987909 -57294580 + L2 LINE L2 2846 3296 -17 248 114 0 0 chr12 86988295 86988339 -57294150 + MADE1 DNA Mariner 37 80 0 517 296 41 96 chr12 86988344 86988689 -57293800 - L3 LINE CR1 -659 918 593 209 241 17 0 chr12 86988878 86988936 -57293553 + (TA)n Simple_repeat Simple_repeat 2 60 0 198 0 0 0 chr12 86989989 86990011 -57292478 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 333 268 89 0 chr12 86990069 86990181 -57292308 - L2 LINE L2 0 3313 3192 1748 147 27 10 chr12 86990527 86990826 -57291663 + AluSx SINE Alu 1 304 -8 212 328 137 33 chr12 86992545 86992728 -57289761 + L2 LINE L2 2933 3134 -179 730 285 191 32 chr12 86992763 86993202 -57289287 + L2 LINE L2 2805 3313 0 249 243 243 9 chr12 86993223 86993330 -57289159 + L2 LINE L2 3182 3313 0 297 311 77 16 chr12 86993910 86994093 -57288396 + ERVL-E LTR ERVL 4897 5090 -674 385 321 76 5 chr12 86994182 86994366 -57288123 + ERVL-E LTR ERVL 5235 5431 -333 262 321 54 18 chr12 86994746 86994858 -57287631 + MLT2E LTR ERVL 35 150 -478 2171 63 21 0 chr12 86995281 86995568 -57286921 - L1PA5 LINE L1 0 6154 5862 474 259 9 0 chr12 86995657 86995769 -57286720 + Tigger3(Golem) DNA MER2_type 30 142 -2887 1239 161 22 22 chr12 86995774 86995997 -57286492 + Tigger3(Golem) DNA MER2_type 2790 3012 -17 877 325 24 0 chr12 86996013 86996262 -57286227 - MIR SINE MIR -6 256 2 437 293 127 0 chr12 86996489 86996639 -57285850 - MIR SINE MIR -2 260 92 190 308 233 0 chr12 86997874 86997994 -57284495 - MIR3 SINE MIR -7 201 54 554 154 90 75 chr12 86998366 86998554 -57283935 + Charlie5 DNA MER1_type 2430 2620 0 24 85 0 0 chr12 86999179 86999238 -57283251 + AT_rich Low_complexity Low_complexity 1 59 0 588 177 96 30 chr12 86999309 86999507 -57282982 - Charlie5 DNA MER1_type -10 2602 2392 227 333 32 0 chr12 86999763 86999889 -57282600 - LTR67 LTR ERVL -9 548 419 264 143 0 0 chr12 87000688 87000737 -57281752 - L1MB1 LINE L1 0 6168 6120 5749 25 0 0 chr12 87000737 87001406 -57281083 - L1PA3 LINE L1 0 6155 5487 14836 45 1 3 chr12 87001406 87003312 -57279177 + L1PA3 LINE L1 3606 5503 -743 324 139 83 14 chr12 87003268 87003340 -57279149 - L1MB1 LINE L1 -54 6135 6059 * 812 300 81 10 chr12 87004899 87005196 -57277293 - L2 LINE L2 -6 3307 2990 396 59 0 0 chr12 87005558 87005609 -57276880 + (TG)n Simple_repeat Simple_repeat 2 52 0 1564 180 3 28 chr12 87005637 87005926 -57276563 - AluJo SINE Alu -30 282 1 188 289 213 52 chr12 87007152 87007401 -57275088 - L2 LINE L2 -1263 2051 1763 27 29 0 0 chr12 87008144 87008178 -57274311 + AT_rich Low_complexity Low_complexity 1 34 0 628 281 128 31 chr12 87008293 87009085 -57273404 - L1MDa LINE L1 -4559 1521 529 183 273 23 0 chr12 87009451 87009495 -57272994 + L2 LINE L2 2927 2971 -342 275 284 32 21 chr12 87009663 87009758 -57272731 - L2 LINE L2 0 3313 3218 1303 161 6 106 chr12 87009759 87010100 -57272389 + AluJo SINE Alu 1 307 -5 722 304 61 0 chr12 87010177 87010407 -57272082 + MIR SINE MIR 18 261 -1 28 0 0 0 chr12 87010791 87010819 -57271670 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 87010890 87010911 -57271578 + AT_rich Low_complexity Low_complexity 1 21 0 2053 150 32 0 chr12 87011232 87011573 -57270916 + MER65A LTR ERV1 61 412 -33 24 32 0 0 chr12 87012079 87012110 -57270379 + AT_rich Low_complexity Low_complexity 1 31 0 5424 127 26 17 chr12 87012110 87013071 -57269418 - L1PA16 LINE L1 -9 6157 5191 3191 212 77 46 chr12 87013465 87014122 -57268367 - L1MA9 LINE L1 -29 6283 5578 1529 199 14 17 chr12 87014122 87014419 -57268070 - AluJo SINE Alu -12 300 5 3191 212 77 46 chr12 87014419 87014848 -57267641 - L1MA9 LINE L1 -734 5578 5164 21 0 0 0 chr12 87014986 87015007 -57267482 + AT_rich Low_complexity Low_complexity 1 21 0 199 262 16 33 chr12 87015098 87015159 -57267330 + MIR3 SINE MIR 116 175 -33 672 62 0 21 chr12 87015238 87015334 -57267155 + L1PA8 LINE L1 6079 6172 0 1486 271 90 20 chr12 87015539 87016247 -57266242 + L1ME LINE L1 3788 4545 -1601 891 194 0 25 chr12 87016281 87016441 -57266048 - AluJ SINE Alu -27 285 130 536 133 0 33 chr12 87016441 87016561 -57265928 + (TTTTC)n Simple_repeat Simple_repeat 1 116 0 554 160 0 120 chr12 87016561 87016711 -57265778 - AluJ SINE Alu -170 132 1 878 265 65 38 chr12 87016736 87017266 -57265223 + MLT1E1 LTR MaLR 43 654 0 1459 239 60 62 chr12 87017289 87018229 -57264260 + L1ME LINE L1 4564 5499 -671 270 0 0 0 chr12 87019437 87019467 -57263022 + (TG)n Simple_repeat Simple_repeat 2 31 0 355 202 0 67 chr12 87019636 87019725 -57262764 + MIR SINE MIR 180 262 0 214 307 34 11 chr12 87020433 87020521 -57261968 - MIR SINE MIR -14 248 159 1371 184 10 59 chr12 87020688 87020992 -57261497 - AluJo SINE Alu -2 310 22 321 280 80 40 chr12 87021313 87021463 -57261026 - MIR SINE MIR -90 172 17 397 321 32 60 chr12 87021884 87022133 -57260356 + MIR SINE MIR 20 261 -1 243 0 0 0 chr12 87022744 87022771 -57259718 + (TA)n Simple_repeat Simple_repeat 2 28 0 2083 171 24 80 chr12 87023456 87024024 -57258465 + L1MB7 LINE L1 4892 5490 -694 15959 136 30 12 chr12 87024024 87024856 -57257633 + Tigger4(Zombi) DNA MER2_type 5 821 -1910 2152 124 0 0 chr12 87024856 87025155 -57257334 + AluSc SINE Alu 1 299 -10 15959 136 30 12 chr12 87025155 87027001 -57255488 + Tigger4(Zombi) DNA MER2_type 821 2731 0 2083 171 24 80 chr12 87027001 87027076 -57255413 + L1MB7 LINE L1 5490 5568 -616 1915 107 7 17 chr12 87027076 87027366 -57255123 + AluSq SINE Alu 5 291 -22 2083 171 24 80 chr12 87027366 87027815 -57254674 + L1MB7 LINE L1 5568 5861 -323 830 210 54 5 chr12 87027987 87028173 -57254316 + AluJb SINE Alu 95 289 -23 1150 152 120 14 chr12 87028173 87028390 -57254099 + MSTA LTR MaLR 189 428 0 1321 299 83 73 chr12 87028390 87028767 -57253722 - ERVL LTR ERVL -1270 4494 4122 1694 161 3 27 chr12 87028767 87029066 -57253423 + AluJo SINE Alu 3 294 -18 1321 299 83 73 chr12 87029066 87029562 -57252927 - ERVL LTR ERVL -1642 4122 3612 528 343 27 17 chr12 87029603 87029886 -57252603 - ERVL LTR ERVL -2042 2954 2672 1293 154 47 0 chr12 87030993 87031207 -57251282 + AluJb SINE Alu 1 224 -88 710 22 0 11 chr12 87031209 87031298 -57251191 + (GAAA)n Simple_repeat Simple_repeat 4 91 0 756 190 52 49 chr12 87031570 87031798 -57250691 - L1MB7 LINE L1 0 6184 5948 232 347 40 24 chr12 87032483 87032607 -57249882 + MIR SINE MIR 4 129 -133 29 28 0 0 chr12 87033198 87033234 -57249255 + AT_rich Low_complexity Low_complexity 1 36 0 283 336 137 0 chr12 87034484 87034630 -57247859 + L1MC/D LINE L1 5450 5615 -2193 418 303 74 34 chr12 87034979 87035040 -57247449 + L1ME LINE L1 5307 5364 -757 749 179 58 0 chr12 87035040 87035213 -57247276 + L1MA7 LINE L1 6109 6291 0 418 303 74 34 chr12 87035213 87035531 -57246958 + L1ME LINE L1 5364 5701 -420 227 79 26 0 chr12 87035702 87035740 -57246749 + (TATG)n Simple_repeat Simple_repeat 2 40 0 427 265 131 44 chr12 87036528 87036873 -57245616 - MLT1H LTR MaLR -17 532 122 738 192 26 16 chr12 87037511 87037704 -57244785 + L1MA8 LINE L1 6095 6289 -2 28 0 0 0 chr12 87037868 87037896 -57244593 + AT_rich Low_complexity Low_complexity 1 28 0 224 296 31 19 chr12 87038252 87038411 -57244078 + A-rich Low_complexity Low_complexity 6 166 0 342 299 34 68 chr12 87038419 87038713 -57243776 + HAL1b LINE L1 109 392 -956 279 276 57 48 chr12 87038898 87039129 -57243360 - L1 LINE L1 -3126 3020 2788 225 222 0 0 chr12 87039231 87039294 -57243195 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 348 303 118 19 chr12 87039321 87039532 -57242957 + L1MC4a LINE L1 4827 5058 -1088 811 272 119 21 chr12 87039539 87040043 -57242446 + L1MC4a LINE L1 5112 5658 -748 1161 292 49 45 chr12 87040048 87040229 -57242260 + MLT1E LTR MaLR 5 184 -409 504 86 21 11 chr12 87040229 87040322 -57242167 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 1161 292 49 45 chr12 87040322 87040585 -57241904 + MLT1E LTR MaLR 184 451 -142 615 304 23 8 chr12 87040875 87041132 -57241357 + L1MC4a LINE L1 5665 5925 -1883 238 237 21 10 chr12 87041580 87041677 -57240812 + (TA)n Simple_repeat Simple_repeat 2 99 0 520 167 102 0 chr12 87041946 87042054 -57240435 + FRAM SINE Alu 43 161 -15 26 30 0 0 chr12 87042131 87042164 -57240325 + AT_rich Low_complexity Low_complexity 1 33 0 192 382 0 13 chr12 87042587 87042663 -57239826 - L3 LINE CR1 -41 1536 1462 310 315 41 14 chr12 87042663 87042809 -57239680 - L3 LINE CR1 -236 1341 1192 820 279 81 81 chr12 87043143 87043276 -57239213 - MLT1J2 LTR MaLR -3 447 315 2223 71 0 0 chr12 87043276 87043591 -57238898 + AluY SINE Alu 2 316 0 820 279 81 81 chr12 87043591 87043888 -57238601 - MLT1J2 LTR MaLR -134 316 15 660 298 15 50 chr12 87043877 87044139 -57238350 - Charlie8 DNA MER1_type -2164 253 1 * 183 328 49 0 chr12 87044417 87044478 -57238011 - L2 LINE L2 -86 3186 3123 1986 109 4 0 chr12 87044501 87044767 -57237722 + AluSx SINE Alu 31 297 -15 506 263 61 85 chr12 87045089 87045336 -57237153 + MLT1J LTR MaLR 119 359 -152 212 228 13 25 chr12 87045378 87045457 -57237032 + T-rich Low_complexity Low_complexity 4 81 0 205 276 103 0 chr12 87045458 87045516 -57236973 + MIR3 SINE MIR 93 156 -52 506 80 0 57 chr12 87045980 87046068 -57236421 - L1MA7 LINE L1 -15 6276 6194 2206 68 0 0 chr12 87046667 87046977 -57235512 - AluY SINE Alu 0 310 1 200 288 0 0 chr12 87046998 87047064 -57235425 + A-rich Low_complexity Low_complexity 1 66 0 23 78 0 0 chr12 87048771 87048822 -57233667 + AT_rich Low_complexity Low_complexity 1 51 0 15688 140 29 16 chr12 87049391 87050659 -57231830 - Tigger4(Zombi) DNA MER2_type 0 2731 1481 1951 131 0 7 chr12 87050659 87050966 -57231523 + AluSx SINE Alu 1 305 0 15688 140 29 16 chr12 87050966 87052390 -57230099 - Tigger4(Zombi) DNA MER2_type -1250 1481 2 1054 64 35 12 chr12 87053897 87054069 -57228420 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 204 40 0 0 chr12 87054254 87054279 -57228210 + (A)n Simple_repeat Simple_repeat 1 25 0 722 304 61 0 chr12 87054356 87054586 -57227903 + MIR SINE MIR 18 261 -1 28 0 0 0 chr12 87054969 87054997 -57227492 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 87055068 87055089 -57227400 + AT_rich Low_complexity Low_complexity 1 21 0 2053 150 32 0 chr12 87055411 87055752 -57226737 + MER65A LTR ERV1 61 412 -33 24 32 0 0 chr12 87056258 87056289 -57226200 + AT_rich Low_complexity Low_complexity 1 31 0 5290 145 8 3 chr12 87056289 87057408 -57225081 - L1PA16 LINE L1 -9 6157 5033 956 148 0 0 chr12 87057408 87057570 -57224919 + L1P LINE L1 4593 4754 -1392 10124 147 7 9 chr12 87057571 87059264 -57223225 - L1PA16 LINE L1 -1121 5025 3337 2200 198 49 27 chr12 87059627 87060178 -57222311 - L1MB7 LINE L1 -87 6087 5562 1915 107 7 17 chr12 87060178 87060468 -57222021 - AluSq SINE Alu -22 291 5 2200 198 49 27 chr12 87060468 87060539 -57221950 - L1MB7 LINE L1 -612 5562 5494 16074 134 38 6 chr12 87060543 87063158 -57219331 - Tigger4(Zombi) DNA MER2_type 0 2731 33 366 211 26 46 chr12 87063167 87063373 -57219116 + C-rich Low_complexity Low_complexity 1 201 0 19486 54 1 1 chr12 87063727 87066229 -57216260 - L1P LINE L1 -1702 4444 1944 482 91 0 0 chr12 87066254 87066320 -57216169 + AluS SINE Alu 1 66 -247 1803 74 4 4 chr12 87066320 87066563 -57215926 - L1P LINE L1 -4407 1739 1497 1536 224 52 9 chr12 87066750 87067314 -57215175 + L1M4 LINE L1 4892 5484 -690 4643 175 29 12 chr12 87067314 87068148 -57214341 + Tigger4(Zombi) DNA MER2_type 1 848 -1883 2483 42 32 0 chr12 87068150 87068458 -57214031 + AluYb8 SINE Alu 1 318 0 542 242 106 0 chr12 87068473 87068634 -57213855 + MLT1J2 LTR MaLR 273 450 0 3292 25 22 0 chr12 87068891 87069292 -57213197 + L1P LINE L1 4069 4478 -1668 2039 93 0 7 chr12 87069784 87070092 -57212397 - AluY SINE Alu 0 310 5 1446 253 38 36 chr12 87070116 87070670 -57211819 - Charlie2 DNA MER1_type -528 2334 1780 1423 248 109 31 chr12 87070735 87071491 -57210998 - Charlie2a DNA MER1_type -1922 940 73 213 178 44 0 chr12 87071633 87071678 -57210811 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 219 316 0 13 chr12 87072042 87072118 -57210371 + A-rich Low_complexity Low_complexity 4 78 0 212 227 31 23 chr12 87072119 87072247 -57210242 + GA-rich Low_complexity Low_complexity 5 133 0 291 283 0 28 chr12 87072270 87072376 -57210113 + GA-rich Low_complexity Low_complexity 3 105 0 2182 110 16 7 chr12 87072567 87072877 -57209612 - AluSp SINE Alu 0 313 1 2247 105 3 0 chr12 87073361 87073656 -57208833 - AluSg SINE Alu -14 296 1 261 83 0 0 chr12 87073781 87073817 -57208672 + (TC)n Simple_repeat Simple_repeat 2 37 0 2029 88 0 0 chr12 87073976 87074236 -57208253 - AluSx SINE Alu -7 305 46 14294 38 0 0 chr12 87074424 87076740 -57205749 + L1PA4 LINE L1 3695 6010 -145 419 236 25 13 chr12 87076999 87077156 -57205333 - Ricksha DNA DNA -25 2829 2671 17742 83 3 4 chr12 87077156 87079494 -57202995 + L1P LINE L1 3 2337 -3809 1576 181 4 139 chr12 87079602 87080177 -57202312 - L1P3 LINE L1 -5624 837 10 342 362 89 40 chr12 87080921 87081450 -57201039 + L2 LINE L2 2697 3266 -47 2419 115 13 54 chr12 87081450 87081841 -57200648 + THE1C LTR MaLR 1 375 0 342 362 89 40 chr12 87081841 87081881 -57200608 + L2 LINE L2 3266 3303 -10 2374 152 61 27 chr12 87082667 87083109 -57199380 + LTR32 LTR ERVL 15 471 0 246 280 80 20 chr12 87084742 87084842 -57197647 - L2 LINE L2 -41 3272 3167 290 319 25 75 chr12 87085436 87085596 -57196893 - L2 LINE L2 -413 2901 2750 259 388 23 31 chr12 87086658 87086787 -57195702 - L2 LINE L2 -8 3264 3137 231 325 38 0 chr12 87087017 87087097 -57195392 + CT-rich Low_complexity Low_complexity 1 83 0 258 313 50 10 chr12 87087932 87088031 -57194458 - L2 LINE L2 -2 3311 3209 597 262 7 7 chr12 87088038 87088179 -57194310 + MIR SINE MIR 10 150 -112 185 412 10 10 chr12 87088434 87088536 -57193953 - L2 LINE L2 -670 2644 2543 526 277 63 59 chr12 87090041 87090279 -57192210 - MIR SINE MIR -15 247 9 257 286 8 60 chr12 87090776 87090909 -57191580 + CT-rich Low_complexity Low_complexity 5 130 0 242 329 0 12 chr12 87090931 87091016 -57191473 + C-rich Low_complexity Low_complexity 4 87 0 283 262 0 0 chr12 87092012 87092073 -57190416 + L2 LINE L2 3252 3312 -1 435 355 0 9 chr12 87092241 87092456 -57190033 + G-rich Low_complexity Low_complexity 1 213 0 7624 54 7 1 chr12 87092533 87093729 -57188760 + L1PA5 LINE L1 4954 6154 0 4768 69 14 2 chr12 87094511 87095636 -57186853 - L1PA6 LINE L1 -325 5829 4698 25 51 0 0 chr12 87095702 87095741 -57186748 + GC_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr12 87095764 87095789 -57186700 + GC_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 87097132 87097163 -57185326 + AT_rich Low_complexity Low_complexity 1 31 0 615 321 71 8 chr12 87097183 87097423 -57185066 + MIR SINE MIR 6 260 -2 376 238 50 18 chr12 87097558 87097669 -57184820 - MLT1I LTR MaLR -3 439 312 1254 191 29 4 chr12 87098144 87098390 -57184099 - L1PA16 LINE L1 -20 6146 5895 446 341 58 13 chr12 87098466 87098735 -57183754 - L2 LINE L2 -210 3062 2778 302 333 74 0 chr12 87098865 87098973 -57183516 + MIR SINE MIR 117 232 -30 24 32 0 0 chr12 87099336 87099367 -57183122 + GC_rich Low_complexity Low_complexity 1 31 0 261 281 82 41 chr12 87099526 87099672 -57182817 - MIR SINE MIR -52 210 59 725 296 38 0 chr12 87099846 87100059 -57182430 + MER58A DNA MER1_type 3 223 -1 455 200 35 0 chr12 87100068 87100112 -57182377 + MER3 DNA MER1_type 1 47 -162 693 171 7 48 chr12 87100112 87100258 -57182231 - MER3 DNA MER1_type 0 209 70 268 197 0 0 chr12 87100249 87100310 -57182179 + MER3 DNA MER1_type 105 165 -44 * 3462 56 5 0 chr12 87100310 87100739 -57181750 + L1PA7 LINE L1 5670 6100 -54 27 29 0 0 chr12 87102498 87102532 -57179957 + AT_rich Low_complexity Low_complexity 1 34 0 839 264 148 35 chr12 87102628 87103147 -57179342 - L1MDa LINE L1 -4652 2037 1313 448 270 207 35 chr12 87103841 87104160 -57178329 - L2 LINE L2 0 3313 2940 2091 104 0 4 chr12 87104486 87104802 -57177687 + AluSg1 SINE Alu 14 328 0 247 83 28 0 chr12 87105061 87105097 -57177392 + MLT1I LTR MaLR 101 137 -272 492 18 0 0 chr12 87105489 87105546 -57176943 + (TA)n Simple_repeat Simple_repeat 1 57 0 1311 203 43 32 chr12 87106077 87106447 -57176042 - L1MDa LINE L1 -5103 1437 1064 720 154 9 0 chr12 87106534 87106644 -57175845 + L1PB4 LINE L1 6044 6154 -2 2026 266 47 38 chr12 87106667 87107495 -57174994 - L1MDa LINE L1 -5520 1020 16 306 260 127 20 chr12 87107495 87107645 -57174844 - MIR SINE MIR -5 257 92 301 353 105 20 chr12 87108269 87108620 -57173869 - L1ME4a LINE L1 -208 5913 5533 935 294 61 46 chr12 87109266 87109661 -57172828 + MLT1I LTR MaLR 9 409 0 617 81 23 0 chr12 87109959 87110046 -57172443 + FAM SINE Alu 94 182 -3 27 62 0 0 chr12 87110468 87110516 -57171973 + AT_rich Low_complexity Low_complexity 1 48 0 197 83 28 0 chr12 87110739 87110775 -57171714 + (CCCCCT)n Simple_repeat Simple_repeat 6 42 0 231 130 81 41 chr12 87111060 87111183 -57171306 + (CCGCG)n Simple_repeat Simple_repeat 1 128 0 * 245 165 25 51 chr12 87111174 87111253 -57171236 + (CGGG)n Simple_repeat Simple_repeat 3 79 0 203 328 0 0 chr12 87112436 87112503 -57169986 + GA-rich Low_complexity Low_complexity 3 69 0 495 295 35 0 chr12 87112860 87113033 -57169456 + L1MC4 LINE L1 7726 7904 -138 31 58 0 0 chr12 87113339 87113391 -57169098 + AT_rich Low_complexity Low_complexity 1 52 0 469 191 0 132 chr12 87114569 87114721 -57167768 + AluJb SINE Alu 2 133 -179 228 68 0 85 chr12 87114798 87114857 -57167632 + (GAAAA)n Simple_repeat Simple_repeat 3 56 0 902 194 0 25 chr12 87114857 87115017 -57167472 + AluJb SINE Alu 130 285 -27 1434 262 96 23 chr12 87115051 87115749 -57166740 - L1M4 LINE L1 -1601 4545 3797 24 0 0 0 chr12 87116566 87116590 -57165899 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr12 87116740 87116788 -57165701 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr12 87116822 87116851 -57165638 + AT_rich Low_complexity Low_complexity 1 29 0 1424 184 76 44 chr12 87117049 87117365 -57165124 - MER2 DNA MER2_type 0 345 20 1990 112 3 18 chr12 87118155 87118474 -57164015 - AluSc SINE Alu 0 315 1 596 217 57 0 chr12 87120041 87120147 -57162342 + AluJb SINE Alu 2 113 -199 291 190 0 0 chr12 87120152 87120210 -57162279 + (TG)n Simple_repeat Simple_repeat 1 58 0 433 358 0 26 chr12 87120223 87120485 -57162004 + CT-rich Low_complexity Low_complexity 1 255 0 4786 120 35 36 chr12 87121061 87121855 -57160634 - L1PA16 LINE L1 -4 6162 5370 353 369 32 48 chr12 87121910 87122281 -57160208 + L2 LINE L2 988 1352 -1962 2415 53 0 0 chr12 87122515 87122825 -57159664 + AluY SINE Alu 3 312 0 242 339 104 56 chr12 87122958 87123401 -57159088 + L2 LINE L2 1887 2350 -964 21 0 0 0 chr12 87125557 87125578 -57156911 + AT_rich Low_complexity Low_complexity 1 21 0 429 329 70 9 chr12 87126976 87127189 -57155300 - Charlie8 DNA MER1_type -2191 226 1 17276 63 1 1 chr12 87127208 87130236 -57152253 - L1PA6 LINE L1 -5 6149 3122 768 301 69 64 chr12 87130916 87131466 -57151023 + L2 LINE L2 2758 3313 0 308 336 30 0 chr12 87131745 87131876 -57150613 + MIR SINE MIR 20 154 -108 314 335 20 46 chr12 87131992 87132144 -57150345 + L2 LINE L2 3122 3269 -3 799 117 0 51 chr12 87132719 87132856 -57149633 + L1PB3 LINE L1 5660 5789 -365 327 62 113 19 chr12 87132856 87133016 -57149473 + (TA)n Simple_repeat Simple_repeat 1 175 0 1793 157 48 3 chr12 87133026 87133342 -57149147 + L1PB3 LINE L1 5762 6088 -66 23 54 0 0 chr12 87133345 87133382 -57149107 + AT_rich Low_complexity Low_complexity 1 37 0 267 239 0 15 chr12 87133548 87133615 -57148874 - L2 LINE L2 0 3313 3248 284 314 59 8 chr12 87133695 87133813 -57148676 + MIR SINE MIR 139 262 0 852 249 37 5 chr12 87133830 87134047 -57148442 - MER58A DNA MER1_type 0 224 1 322 335 58 40 chr12 87134051 87134275 -57148214 - L2 LINE L2 -189 3083 2856 333 0 0 0 chr12 87134899 87134936 -57147553 + (CA)n Simple_repeat Simple_repeat 1 37 0 191 287 139 20 chr12 87135485 87135586 -57146903 + MIR SINE MIR 15 127 -135 363 356 42 0 chr12 87135830 87135948 -57146541 - L2 LINE L2 -9 3263 3141 456 192 123 0 chr12 87136121 87136251 -57146238 - MER69 DNA AcHobo 0 2526 2381 44 0 0 0 chr12 87137176 87137220 -57145269 + AT_rich Low_complexity Low_complexity 1 44 0 2379 59 3 0 chr12 87137220 87137509 -57144980 - AluY SINE Alu -21 290 1 362 337 112 6 chr12 87137515 87137684 -57144805 - MIR SINE MIR -74 188 2 593 251 74 44 chr12 87138433 87138636 -57143853 - MIR SINE MIR -13 249 41 237 184 20 0 chr12 87140951 87141000 -57141489 - Alu SINE Alu -29 274 225 40 21 0 0 chr12 87141159 87141206 -57141283 + AT_rich Low_complexity Low_complexity 1 47 0 202 240 40 0 chr12 87141844 87141894 -57140595 + L2 LINE L2 3254 3305 -8 2429 52 6 52 chr12 87142467 87142793 -57139696 - AluY SINE Alu 0 311 1 204 344 32 48 chr12 87143278 87143464 -57139025 - L2 LINE L2 -927 2387 2205 233 238 143 0 chr12 87144945 87145008 -57137481 - L2 LINE L2 0 3313 3242 225 65 0 0 chr12 87145444 87145475 -57137014 + (CA)n Simple_repeat Simple_repeat 2 32 0 287 266 8 0 chr12 87145477 87145601 -57136888 + (TA)n Simple_repeat Simple_repeat 2 126 0 1959 104 3 60 chr12 87146357 87146673 -57135816 + AluY SINE Alu 1 298 -13 21 57 0 0 chr12 87149542 87149577 -57132912 + AT_rich Low_complexity Low_complexity 1 35 0 870 319 177 32 chr12 87150082 87150703 -57131786 + L3 LINE CR1 459 1199 -378 2228 117 0 0 chr12 87150703 87151001 -57131488 + AluSx SINE Alu 1 298 -14 870 319 177 32 chr12 87151001 87151097 -57131392 + L3 LINE CR1 1199 1280 -297 24 32 0 0 chr12 87151690 87151721 -57130768 + AT_rich Low_complexity Low_complexity 1 31 0 310 320 63 29 chr12 87152412 87152587 -57129902 + L2 LINE L2 2910 3090 -182 205 245 0 19 chr12 87152695 87152748 -57129741 + L2 LINE L2 3258 3309 -4 372 354 91 45 chr12 87152757 87153265 -57129224 + L2 LINE L2 2036 2566 -748 2898 267 42 76 chr12 87153475 87153763 -57128726 + L1 LINE L1 2627 2923 -3223 350 21 21 0 chr12 87153763 87153810 -57128679 + (CA)n Simple_repeat Simple_repeat 2 49 0 2898 267 42 76 chr12 87153810 87155106 -57127383 + L1 LINE L1 2923 4262 -1884 2323 101 0 0 chr12 87155106 87155404 -57127085 + AluSg SINE Alu 1 298 -12 2898 267 42 76 chr12 87155404 87155511 -57126978 + L1 LINE L1 4262 4259 -1887 351 0 0 0 chr12 87155511 87155550 -57126939 + (CA)n Simple_repeat Simple_repeat 2 40 0 2898 267 42 76 chr12 87155550 87155637 -57126852 + L1 LINE L1 4258 4346 -1800 867 160 99 0 chr12 87155645 87155826 -57126663 + L1MD1 LINE L1 6019 6217 -25 398 313 80 0 chr12 87156013 87156214 -57126275 + L2 LINE L2 1825 2041 -1273 344 302 132 59 chr12 87156206 87156593 -57125896 + L2 LINE L2 2896 3310 -3 * 425 241 51 0 chr12 87156806 87156943 -57125546 + L1M4 LINE L1 2992 3135 -3011 269 265 35 76 chr12 87158028 87158175 -57124314 + MIR SINE MIR 11 152 -56 376 324 124 13 chr12 87158371 87158596 -57123893 + MIR SINE MIR 12 261 -1 6726 179 106 42 chr12 87159189 87160635 -57121854 - MER52A LTR ERV1 0 1755 217 22 0 0 0 chr12 87160801 87160823 -57121666 + AT_rich Low_complexity Low_complexity 1 22 0 6541 154 41 5 chr12 87160826 87162014 -57120475 + Tigger3b DNA MER2_type 1 1231 0 2286 87 3 7 chr12 87162943 87163242 -57119247 + AluY SINE Alu 1 298 -13 496 277 99 14 chr12 87163465 87163678 -57118811 - MIR SINE MIR 0 262 32 195 290 47 118 chr12 87163824 87164103 -57118386 - L2 LINE L2 -828 2486 2228 191 310 123 53 chr12 87164110 87164281 -57118208 - L2 LINE L2 -1257 2057 1875 435 125 28 0 chr12 87164945 87165017 -57117472 - MSTD LTR MaLR 0 396 323 234 200 0 50 chr12 87165023 87165083 -57117406 - MSTD LTR MaLR -52 344 288 2171 278 110 33 chr12 87217574 87219446 -57063043 - L1ME LINE L1 -425 6139 4123 1335 234 62 6 chr12 87219445 87219782 -57062707 - L1MC1 LINE L1 0 6333 5978 * 528 268 66 33 chr12 87219795 87220038 -57062451 - L1ME LINE L1 -2420 4120 3870 230 274 94 17 chr12 87220052 87220169 -57062320 - L1ME LINE L1 -5039 1682 1557 351 280 81 11 chr12 87220209 87220386 -57062103 - L1MDb LINE L1 -5106 1434 1253 2131 117 3 3 chr12 87220531 87220840 -57061649 + AluSg SINE Alu 1 309 -1 223 197 0 70 chr12 87221387 87221458 -57061031 + GA-rich Low_complexity Low_complexity 1 66 0 576 194 8 22 chr12 87222158 87222292 -57060197 + MER3 DNA MER1_type 73 204 -5 336 203 16 0 chr12 87222243 87222307 -57060182 - MER3 DNA MER1_type -108 101 37 * 26 74 0 0 chr12 87222674 87222728 -57059761 + AT_rich Low_complexity Low_complexity 1 54 0 24 32 0 0 chr12 87223854 87223885 -57058604 + AT_rich Low_complexity Low_complexity 1 31 0 206 317 24 0 chr12 87224027 87224109 -57058380 + CT-rich Low_complexity Low_complexity 3 86 0 21 0 0 0 chr12 87224597 87224618 -57057871 + AT_rich Low_complexity Low_complexity 1 21 0 1135 171 60 75 chr12 87224664 87224996 -57057493 + MER33 DNA MER1_type 1 317 -7 1558 210 123 5 chr12 87225005 87225386 -57057103 - MSTB LTR MaLR 0 426 1 180 283 109 0 chr12 87226693 87226739 -57055750 - L2 LINE L2 -86 3186 3136 1859 126 35 35 chr12 87229041 87229351 -57053138 + AluSx SINE Alu 3 312 0 1955 103 7 4 chr12 87230429 87230702 -57051787 + AluY SINE Alu 1 274 -37 252 77 0 0 chr12 87230880 87230919 -57051570 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2590 211 18 41 chr12 87231480 87232045 -57050444 - MLT2B3 LTR ERVL -2 552 1 597 257 0 0 chr12 87232874 87233053 -57049436 + CT-rich Low_complexity Low_complexity 2 180 0 327 320 73 62 chr12 87235692 87235964 -57046525 - L3b LINE CR1 -31 1552 1278 283 267 30 30 chr12 87236078 87236179 -57046310 + MIR SINE MIR 162 262 0 467 210 85 114 chr12 87237965 87238141 -57044348 - MLT1H1 LTR MaLR 0 555 385 4186 118 8 0 chr12 87238150 87238780 -57043709 - MER41B LTR ERV1 0 635 1 5215 103 22 6 chr12 87238780 87239556 -57042933 - MER41B-int LTR ERV1 0 5946 5159 23 0 0 0 chr12 87239556 87239579 -57042910 + AT_rich Low_complexity Low_complexity 1 23 0 1297 174 40 51 chr12 87239591 87239867 -57042622 - AluJb SINE Alu -26 286 14 519 106 106 11 chr12 87239887 87239981 -57042508 - L1MA2 LINE L1 0 6304 6202 21 0 0 0 chr12 87240319 87240340 -57042149 + AT_rich Low_complexity Low_complexity 1 21 0 1380 298 38 42 chr12 87240355 87240943 -57041546 + L2 LINE L2 2722 3311 -2 202 272 82 89 chr12 87241125 87241283 -57041206 + MIR SINE MIR 79 235 -27 295 396 0 0 chr12 87242338 87242429 -57040060 + polypurine Low_complexity Low_complexity 5 95 0 257 253 35 29 chr12 87242429 87242603 -57039886 + GA-rich Low_complexity Low_complexity 1 175 0 256 313 30 0 chr12 87242603 87242670 -57039819 + polypurine Low_complexity Low_complexity 4 72 0 307 277 23 17 chr12 87242671 87242848 -57039641 + GA-rich Low_complexity Low_complexity 1 178 0 244 91 0 0 chr12 87242861 87242894 -57039595 + (TCCCC)n Simple_repeat Simple_repeat 2 34 0 733 169 6 6 chr12 87242906 87243072 -57039417 + CT-rich Low_complexity Low_complexity 4 169 0 954 116 6 17 chr12 87243073 87243254 -57039235 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1964 129 0 0 chr12 87243255 87243534 -57038955 - AluSx SINE Alu -33 279 1 34 55 0 0 chr12 87245324 87245379 -57037110 + AT_rich Low_complexity Low_complexity 1 55 0 345 82 0 0 chr12 87245399 87245448 -57037041 - L1PA3 LINE L1 -2 6153 6105 913 50 0 0 chr12 87245448 87245567 -57036922 + L1PA4 LINE L1 5932 6050 -105 312 109 0 0 chr12 87245579 87245625 -57036864 - MADE1 DNA Mariner -34 46 1 24 0 0 0 chr12 87245954 87245978 -57036511 + AT_rich Low_complexity Low_complexity 1 24 0 201 250 88 50 chr12 87246541 87246621 -57035868 - MIR SINE MIR -107 155 73 2041 117 16 16 chr12 87246772 87247081 -57035408 + AluSx SINE Alu 3 311 -1 228 312 94 12 chr12 87247227 87247397 -57035092 + MIR SINE MIR 77 260 -2 394 266 44 18 chr12 87247436 87247549 -57034940 - MIR3 SINE MIR -48 160 45 25 65 0 0 chr12 87248112 87248158 -57034331 + AT_rich Low_complexity Low_complexity 1 46 0 229 273 227 40 chr12 87248219 87248369 -57034120 - MIR SINE MIR -4 258 81 1355 182 23 0 chr12 87249662 87249920 -57032569 - L1PA16 LINE L1 -16 6150 5887 249 273 43 50 chr12 87250079 87250218 -57032271 - L1ME LINE L1 -394 5727 5590 181 341 12 35 chr12 87253337 87253422 -57029067 - L2 LINE L2 -204 3068 2986 254 104 0 42 chr12 87253732 87253780 -57028709 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 249 33 0 0 chr12 87253784 87253814 -57028675 + (TG)n Simple_repeat Simple_repeat 1 30 0 3135 163 13 6 chr12 87253820 87254365 -57028124 + MER44D DNA MER2_type 1 604 -1 228 86 0 0 chr12 87254366 87254401 -57028088 + (TG)n Simple_repeat Simple_repeat 2 36 0 211 395 0 0 chr12 87254964 87255040 -57027449 + L2 LINE L2 3196 3271 -1 305 353 105 38 chr12 87255204 87255814 -57026675 + L2 LINE L2 1737 2387 -927 182 277 0 77 chr12 87255938 87256003 -57026486 + L2 LINE L2 2445 2504 -810 322 143 0 0 chr12 87256130 87256179 -57026310 - MLT2D LTR ERVL 0 520 472 243 146 0 0 chr12 87256179 87256220 -57026269 + (CA)n Simple_repeat Simple_repeat 1 41 0 1998 162 61 10 chr12 87256220 87256582 -57025907 - MLT2D LTR ERVL -40 424 1 225 0 0 0 chr12 87256608 87256633 -57025856 + (CA)n Simple_repeat Simple_repeat 2 26 0 331 303 63 72 chr12 87258172 87258393 -57024096 + Charlie8 DNA MER1_type 167 385 -2032 218 195 0 0 chr12 87259466 87259507 -57022982 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 288 368 148 41 chr12 87260362 87260780 -57021709 - L3b LINE CR1 -10 1573 1111 440 302 17 9 chr12 87261537 87261653 -57020836 - MIR SINE MIR -144 118 2 395 317 28 0 chr12 87261691 87261836 -57020653 - MIR SINE MIR -15 247 99 4476 245 32 50 chr12 87263076 87265490 -57016999 - L1ME1 LINE L1 -29 6397 4026 25 31 0 0 chr12 87265495 87265527 -57016962 + AT_rich Low_complexity Low_complexity 1 32 0 404 217 71 99 chr12 87265688 87266051 -57016438 - L1ME1 LINE L1 -3786 2620 2321 1604 263 60 17 chr12 87266170 87266720 -57015769 + LTR68 LTR ERV1 103 740 0 552 259 31 100 chr12 87266740 87267029 -57015460 - L1ME1 LINE L1 -5348 1061 793 4673 225 33 48 chr12 87267036 87268625 -57013864 - L1MCa LINE L1 -1905 4521 2956 313 185 22 11 chr12 87268631 87268723 -57013766 + L1MCa LINE L1 1825 1917 -4509 2643 100 6 3 chr12 87268723 87269082 -57013407 - THE1B LTR MaLR 0 364 5 719 163 155 29 chr12 87269231 87269470 -57013019 + L1MCa LINE L1 1914 2182 -4244 1844 222 63 6 chr12 87269493 87270283 -57012206 - L1MCa LINE L1 -3474 2952 2117 7481 37 0 2 chr12 87270283 87271599 -57010890 - L1PA3 LINE L1 0 6155 4840 13042 37 0 0 chr12 87271599 87273183 -57009306 + L1PA3 LINE L1 3283 4866 -1280 4571 182 78 39 chr12 87273181 87274357 -57008132 - L1MCa LINE L1 -4298 2128 999 * 252 59 0 0 chr12 87274357 87274391 -57008098 + (TG)n Simple_repeat Simple_repeat 1 34 0 4571 182 78 39 chr12 87274391 87274636 -57007853 - L1MCa LINE L1 -5427 999 765 2383 63 0 3 chr12 87274636 87274935 -57007554 + AluY SINE Alu 6 303 -8 4571 182 78 39 chr12 87274935 87275337 -57007152 - L1MCa LINE L1 -5661 765 20 263 309 85 12 chr12 87275745 87275910 -57006579 - L1MDa LINE L1 -6128 412 236 841 150 36 0 chr12 87276257 87276397 -57006092 + L1PA13 LINE L1 6015 6159 -4 4592 140 21 11 chr12 87277511 87278303 -57004186 + L1MA4A LINE L1 5496 6295 -8 1992 197 46 23 chr12 87280561 87280998 -57001491 + L1MC1 LINE L1 5874 6320 -13 1605 175 0 38 chr12 87281001 87281319 -57001170 + AluJo SINE Alu 1 307 0 484 298 153 52 chr12 87281438 87281881 -57000608 + L2 LINE L2 2826 3313 0 225 185 19 0 chr12 87282666 87282720 -56999769 - L1MC4 LINE L1 -1378 6664 6610 1431 214 0 26 chr12 87283369 87283678 -56998811 - AluJo SINE Alu -8 304 4 1585 123 97 4 chr12 87285001 87285270 -56997219 + AluSx SINE Alu 13 306 -6 209 235 59 0 chr12 87285278 87285329 -56997160 - MIR3 SINE MIR -27 181 128 370 283 80 11 chr12 87285558 87285760 -56996729 - Charlie8 DNA MER1_type -1038 1379 67 27 0 0 0 chr12 87288834 87288861 -56993628 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr12 87289205 87289239 -56993250 + AT_rich Low_complexity Low_complexity 1 34 0 1615 141 12 0 chr12 87291158 87291400 -56991089 - AluSx SINE Alu -22 290 46 22 0 0 0 chr12 87293502 87293524 -56988965 + AT_rich Low_complexity Low_complexity 1 22 0 2341 81 10 3 chr12 87294939 87295246 -56987243 + AluSp SINE Alu 1 309 -4 181 194 45 104 chr12 87297306 87297373 -56985116 + MER5B DNA MER1_type 3 65 -113 319 307 35 9 chr12 87297547 87297661 -56984828 + L3 LINE CR1 1458 1574 -3 2804 7 0 0 chr12 87298057 87298365 -56984124 - AluYa5 SINE Alu -2 309 2 1044 264 81 80 chr12 87299497 87299844 -56982645 - L1ME3A LINE L1 -116 6054 5709 1089 91 6 12 chr12 87299844 87300009 -56982480 + L1PB1 LINE L1 5988 6151 0 1044 264 81 80 chr12 87300009 87300264 -56982225 - L1ME3A LINE L1 -461 5709 5448 1968 220 49 2 chr12 87300264 87300710 -56981779 + MLT1C LTR MaLR 1 467 0 1044 264 81 80 chr12 87300710 87300735 -56981754 - L1ME3A LINE L1 -722 5448 5425 479 263 180 28 chr12 87300770 87301194 -56981295 - L1MEc LINE L1 -3636 2579 2064 2032 132 7 0 chr12 87301194 87301497 -56980992 - AluSq SINE Alu -8 305 1 479 263 180 28 chr12 87301497 87301728 -56980761 - L1MEc LINE L1 -4151 2064 1869 233 200 161 46 chr12 87301857 87301987 -56980502 - L1M1 LINE L1 -4607 2958 2814 410 272 139 60 chr12 87302087 87302580 -56979909 - L1MEc LINE L1 -4869 1336 900 22 56 0 0 chr12 87302872 87302908 -56979581 + AT_rich Low_complexity Low_complexity 1 36 0 2478 58 0 16 chr12 87305852 87306164 -56976325 - AluY SINE Alu -4 307 1 1522 173 25 0 chr12 87306223 87306507 -56975982 + L1PB4 LINE L1 5866 6156 0 26 0 0 0 chr12 87307496 87307522 -56974967 + AT_rich Low_complexity Low_complexity 1 26 0 2189 102 3 0 chr12 87308341 87308636 -56973853 + AluSg SINE Alu 1 296 -14 1940 163 23 43 chr12 87309063 87309461 -56973028 + MLT1B LTR MaLR 1 390 0 394 334 211 30 chr12 87309883 87310590 -56971899 - L3 LINE CR1 -124 1453 619 188 146 0 21 chr12 87313571 87313619 -56968870 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 23 33 0 0 chr12 87315003 87315033 -56967456 + AT_rich Low_complexity Low_complexity 1 30 0 203 86 0 29 chr12 87315577 87315603 -56966886 + (TA)n Simple_repeat Simple_repeat 1 27 -7 5977 167 67 10 chr12 87315603 87316768 -56965721 + Tigger3b DNA MER2_type 1 1231 0 203 86 0 29 chr12 87316768 87316776 -56965713 + (TA)n Simple_repeat Simple_repeat 27 34 0 382 187 13 13 chr12 87318334 87318409 -56964080 + MER96 DNA MER1_type? 1 75 -100 698 250 34 11 chr12 87319118 87319294 -56963195 + MIR SINE MIR 83 262 0 27 29 0 0 chr12 87320143 87320177 -56962312 + AT_rich Low_complexity Low_complexity 1 34 0 250 251 77 56 chr12 87321471 87321849 -56960640 + L1ME4a LINE L1 5734 6119 -2 206 381 97 45 chr12 87322137 87322489 -56960000 - L2 LINE L2 -16 3256 2887 2472 165 0 31 chr12 87322927 87323375 -56959114 + Tigger2a DNA MER2_type 1 434 0 25 65 0 0 chr12 87323435 87323481 -56959008 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr12 87323796 87323831 -56958658 + AT_rich Low_complexity Low_complexity 1 35 0 4626 161 11 7 chr12 87324088 87324905 -56957584 + L1PB4 LINE L1 5351 6298 -1 1056 85 0 0 chr12 87324983 87325136 -56957353 + (GGAA)n Simple_repeat Simple_repeat 4 156 0 384 356 137 5 chr12 87325657 87325876 -56956613 - MIR SINE MIR 0 262 15 1841 155 7 7 chr12 87326298 87326608 -56955881 + AluSx SINE Alu 3 312 0 1926 129 3 42 chr12 87326611 87326921 -56955568 + AluSq SINE Alu 1 298 -15 338 287 145 53 chr12 87327284 87327435 -56955054 + MIR3 SINE MIR 2 167 -41 1517 255 104 38 chr12 87327467 87327937 -56954552 + MLT1F1 LTR MaLR 67 567 0 23 33 0 0 chr12 87330022 87330052 -56952437 + AT_rich Low_complexity Low_complexity 1 30 0 270 56 0 0 chr12 87331563 87331599 -56950890 + (CAATA)n Simple_repeat Simple_repeat 2 37 0 896 242 178 22 chr12 87332117 87332667 -56949822 + L2 LINE L2 2685 3306 -7 26 0 0 0 chr12 87333352 87333378 -56949111 + AT_rich Low_complexity Low_complexity 1 26 0 770 306 70 62 chr12 87334915 87335638 -56946851 - L2 LINE L2 -31 3282 2537 195 250 0 0 chr12 87335641 87335685 -56946804 + L2 LINE L2 3229 3272 0 349 312 149 0 chr12 87335702 87335856 -56946633 + MIR SINE MIR 73 249 -13 534 373 29 4 chr12 87336841 87337082 -56945407 + MIR SINE MIR 5 251 -11 212 0 36 0 chr12 87337097 87337125 -56945364 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1915 141 10 3 chr12 87337130 87337429 -56945060 - AluSx SINE Alu -11 301 1 282 360 102 13 chr12 87338159 87338612 -56943877 + L2 LINE L2 2568 3087 -185 26 50 0 0 chr12 87338660 87338700 -56943789 + AT_rich Low_complexity Low_complexity 1 40 0 692 332 70 4 chr12 87338855 87339096 -56943393 - MIR SINE MIR 0 262 6 245 378 31 0 chr12 87340767 87340865 -56941624 - MIR SINE MIR -142 120 20 27 0 0 0 chr12 87341433 87341460 -56941029 + AT_rich Low_complexity Low_complexity 1 27 0 2566 58 0 0 chr12 87342039 87342348 -56940141 + AluY SINE Alu 1 309 -2 21 0 0 0 chr12 87343948 87343969 -56938520 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 87344631 87344668 -56937821 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr12 87345572 87345599 -56936890 + AT_rich Low_complexity Low_complexity 1 27 0 388 391 110 7 chr12 87345992 87346447 -56936042 - L2 LINE L2 -2122 1192 691 29 47 0 0 chr12 87347090 87347133 -56935356 + AT_rich Low_complexity Low_complexity 1 43 0 313 242 83 38 chr12 87347683 87347815 -56934674 + MIR SINE MIR 124 261 -1 284 386 81 9 chr12 87347951 87348174 -56934315 - L2 LINE L2 -443 2871 2633 482 357 176 27 chr12 87348544 87349357 -56933132 - L3 LINE CR1 -3 1574 641 181 214 71 0 chr12 87350777 87350819 -56931670 + L2 LINE L2 3269 3313 0 297 267 121 58 chr12 87351783 87351989 -56930500 + HAL1 LINE L1 1451 1669 -838 23 0 0 0 chr12 87352080 87352103 -56930386 + AT_rich Low_complexity Low_complexity 1 23 0 1186 202 9 17 chr12 87352609 87352842 -56929647 - AluJo SINE Alu -71 241 11 36 40 0 0 chr12 87354145 87354195 -56928294 + AT_rich Low_complexity Low_complexity 1 50 0 23 78 0 0 chr12 87354358 87354409 -56928080 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr12 87355382 87355403 -56927086 + AT_rich Low_complexity Low_complexity 1 21 0 21 67 0 40 chr12 87358413 87358488 -56924001 + AT_rich Low_complexity Low_complexity 1 72 0 1243 191 54 0 chr12 87359029 87359307 -56923182 + MER33 DNA MER1_type 10 302 -22 233 208 208 28 chr12 87359412 87359484 -56923005 + MER20B DNA MER1_type 56 140 -643 1716 173 40 0 chr12 87359519 87359819 -56922670 - AluJo SINE Alu 0 312 1 2327 174 4 35 chr12 87360796 87361255 -56921234 + MER65A LTR ERV1 1 445 0 1371 186 72 27 chr12 87361824 87362157 -56920332 + MER7A DNA MER2_type 1 346 0 213 315 185 8 chr12 87363479 87363609 -56918880 + MIR3 SINE MIR 29 181 -27 1054 350 147 13 chr12 87363740 87364725 -56917764 - L3 LINE CR1 -1 1576 460 2087 103 4 4 chr12 87366176 87366457 -56916032 + AluSx SINE Alu 1 281 -31 315 0 0 0 chr12 87366460 87366495 -56915994 + (CAA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr12 87366952 87366976 -56915513 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr12 87368321 87368352 -56914137 + AT_rich Low_complexity Low_complexity 1 31 0 182 245 0 20 chr12 87369617 87369666 -56912823 + MIR SINE MIR 215 262 0 198 156 0 0 chr12 87369783 87369828 -56912661 + A-rich Low_complexity Low_complexity 5 49 0 1206 161 60 0 chr12 87372183 87372400 -56910089 - MER30 DNA MER1_type 0 230 1 589 15 0 0 chr12 87373592 87373694 -56908795 + L1PA3 LINE L1 6070 6171 0 201 357 80 9 chr12 87373732 87373844 -56908645 + MIR SINE MIR 32 151 -111 1798 238 97 18 chr12 87374524 87375029 -56907460 + MER74A LTR ERVL 14 558 0 56 48 0 0 chr12 87375035 87375119 -56907370 + AT_rich Low_complexity Low_complexity 1 84 0 186 276 134 16 chr12 87377005 87377132 -56905357 + MIR SINE MIR 61 202 -60 63 44 0 0 chr12 87377168 87377259 -56905230 + AT_rich Low_complexity Low_complexity 1 91 0 1381 196 0 72 chr12 87377643 87377964 -56904525 - AluJo SINE Alu -12 300 3 444 351 25 10 chr12 87377991 87378193 -56904296 + MIR SINE MIR 53 257 -5 180 440 0 0 chr12 87378937 87379012 -56903477 - L3 LINE CR1 -35 1542 1468 2184 78 0 0 chr12 87379169 87379440 -56903049 + AluSg SINE Alu 1 271 -39 26 0 0 0 chr12 87379440 87379466 -56903023 + AT_rich Low_complexity Low_complexity 1 26 0 322 310 17 26 chr12 87381009 87381125 -56901364 - L2 LINE L2 -14 3299 3185 207 336 124 39 chr12 87381302 87381561 -56900928 - L2 LINE L2 -465 2849 2569 21 0 0 0 chr12 87381791 87381812 -56900677 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr12 87382662 87382709 -56899780 + (TA)n Simple_repeat Simple_repeat 2 48 0 5759 72 6 14 chr12 87383348 87384184 -56898305 + L1PA5 LINE L1 5326 6154 0 1391 192 17 43 chr12 87385060 87385362 -56897127 + AluJb SINE Alu 1 294 -18 360 272 18 9 chr12 87385522 87385636 -56896853 + MLT1A2 LTR MaLR 1 115 -259 455 267 0 0 chr12 87386157 87386258 -56896231 - MER5A DNA MER1_type -83 106 6 13580 139 25 35 chr12 87387035 87387840 -56894649 - Tigger1 DNA MER2_type 0 2418 1607 1961 141 3 0 chr12 87387840 87388130 -56894359 - AluSx SINE Alu -18 294 4 13580 139 25 35 chr12 87388130 87389576 -56892913 - Tigger1 DNA MER2_type -811 1607 189 2066 148 0 0 chr12 87389576 87389874 -56892615 + AluJb SINE Alu 6 303 -9 13580 139 25 35 chr12 87389874 87390062 -56892427 - Tigger1 DNA MER2_type -2229 189 1 198 139 111 0 chr12 87390446 87390482 -56892007 - L2 LINE L2 0 3313 3274 277 309 62 68 chr12 87390882 87391044 -56891445 + MIR SINE MIR 2 162 -100 305 282 28 0 chr12 87391256 87391327 -56891162 - L2 LINE L2 -508 2806 2734 954 190 5 60 chr12 87391335 87391560 -56890929 - AluJo SINE Alu 0 306 93 487 282 158 39 chr12 87391561 87391916 -56890573 - L2 LINE L2 -572 2742 2346 209 312 108 21 chr12 87393643 87393736 -56888753 + L2 LINE L2 3199 3299 -14 209 384 76 0 chr12 87393979 87394151 -56888338 + L2 LINE L2 2778 2962 -352 406 329 7 7 chr12 87395783 87395920 -56886569 - L2 LINE L2 0 3313 3177 567 40 0 0 chr12 87396101 87396175 -56886314 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 239 241 0 0 chr12 87396267 87396321 -56886168 + T-rich Low_complexity Low_complexity 2 55 0 24 0 0 0 chr12 87396552 87396576 -56885913 + AT_rich Low_complexity Low_complexity 1 24 0 276 226 0 0 chr12 87397338 87397391 -56885098 - L2 LINE L2 -526 2788 2736 180 97 0 0 chr12 87397401 87397432 -56885057 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 246 135 0 0 chr12 87397435 87397472 -56885017 - Alu SINE Alu -21 281 245 482 322 134 39 chr12 87398002 87398492 -56883997 - L2 LINE L2 -1 3271 2734 954 190 5 60 chr12 87398500 87398725 -56883764 - AluJo SINE Alu 0 306 93 1084 273 132 50 chr12 87398726 87399346 -56883143 - L2 LINE L2 -572 2742 2072 534 294 98 23 chr12 87399348 87399613 -56882876 - L2 LINE L2 -3005 309 25 198 423 90 5 chr12 87399714 87399915 -56882574 + L2 LINE L2 2873 3090 -182 522 305 195 38 chr12 87400084 87400772 -56881717 + L1M2 LINE L1 530 1407 -5442 517 144 8 38 chr12 87400878 87401010 -56881479 + CT-rich Low_complexity Low_complexity 2 129 0 352 227 73 73 chr12 87401634 87401784 -56880705 + L1ME3A LINE L1 5889 6038 -132 30 59 0 0 chr12 87402075 87402126 -56880363 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr12 87402649 87402684 -56879805 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr12 87404777 87404813 -56877676 + AT_rich Low_complexity Low_complexity 1 36 0 76 0 0 0 chr12 87406128 87406204 -56876285 + AT_rich Low_complexity Low_complexity 1 76 0 414 53 0 0 chr12 87406778 87406835 -56875654 + (CA)n Simple_repeat Simple_repeat 2 58 0 22 35 0 0 chr12 87407612 87407641 -56874848 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 87407954 87407982 -56874507 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr12 87408296 87408331 -56874158 + AT_rich Low_complexity Low_complexity 1 35 0 1043 221 19 0 chr12 87410040 87410248 -56872241 - MER58A DNA MER1_type -4 220 9 479 296 79 16 chr12 87410256 87410445 -56872044 + MIR SINE MIR 31 231 -31 31 26 0 0 chr12 87412100 87412138 -56870351 + AT_rich Low_complexity Low_complexity 1 38 0 2129 109 0 22 chr12 87412148 87412459 -56870030 + AluSx SINE Alu 1 304 -8 1383 219 69 35 chr12 87412735 87413168 -56869321 + MLT1C LTR MaLR 20 467 0 339 104 0 0 chr12 87414716 87414764 -56867725 - MADE1 DNA Mariner 0 80 33 1504 202 11 3 chr12 87414979 87415261 -56867228 + AluJo SINE Alu 12 295 -17 359 289 43 43 chr12 87415536 87415747 -56866742 + MIR SINE MIR 10 220 -42 369 0 0 0 chr12 87415847 87415888 -56866601 + (TG)n Simple_repeat Simple_repeat 2 42 0 248 247 49 12 chr12 87415963 87416044 -56866445 + MER102a DNA MER1_type 245 328 -2 243 61 0 0 chr12 87416676 87416709 -56865780 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2123 306 132 18 chr12 87416770 87418092 -56864397 - L2 LINE L2 0 3313 1787 24 53 0 0 chr12 87419170 87419208 -56863281 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr12 87419434 87419472 -56863017 + AT_rich Low_complexity Low_complexity 1 38 0 5377 146 40 28 chr12 87419858 87420877 -56861612 + L1MA7 LINE L1 5260 6291 0 1378 203 4 11 chr12 87420877 87421148 -56861341 + AluJo SINE Alu 1 269 -43 423 0 0 0 chr12 87421159 87421206 -56861283 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 1408 214 7 0 chr12 87421225 87421501 -56860988 + AluJb SINE Alu 1 278 -34 252 86 0 0 chr12 87421504 87421539 -56860950 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1093 232 32 38 chr12 87423190 87423535 -56858954 + L1ME1 LINE L1 5807 6149 -17 578 243 22 1 chr12 87423859 87424018 -56858471 - L1MB8 LINE L1 -176 5992 5830 201 181 14 28 chr12 87424018 87424090 -56858399 + (TA)n Simple_repeat Simple_repeat 1 71 0 3909 215 32 10 chr12 87424667 87425764 -56856725 - L1MB7 LINE L1 -10 6174 5056 24 0 0 0 chr12 87425832 87425856 -56856633 + AT_rich Low_complexity Low_complexity 1 24 0 182 191 21 21 chr12 87425856 87425903 -56856586 - L2 LINE L2 0 3313 3267 191 345 82 64 chr12 87426086 87426306 -56856183 - L2 LINE L2 -242 3030 2807 502 200 18 0 chr12 87426516 87426626 -56855863 - MER53 DNA DNA 0 189 78 1197 305 179 14 chr12 87426691 87427379 -56855110 - L2 LINE L2 -349 2965 2165 1133 319 42 15 chr12 87427567 87427975 -56854514 + L2 LINE L2 2279 2697 -617 199 50 75 0 chr12 87429023 87429063 -56853426 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr12 87429294 87429323 -56853166 + AT_rich Low_complexity Low_complexity 1 29 0 2269 54 34 0 chr12 87429409 87429707 -56852782 + L1PA8 LINE L1 5864 6171 -1 344 322 89 6 chr12 87429984 87430309 -56852180 + L1 LINE L1 4258 4605 -1541 968 205 127 19 chr12 87430310 87430701 -56851788 + LTR48 LTR ERV1 1 461 -326 692 251 20 20 chr12 87430764 87430959 -56851530 + LTR48 LTR ERV1 593 787 0 459 259 293 26 chr12 87431065 87431524 -56850965 - L2 LINE L2 -2 3311 2688 238 211 0 0 chr12 87431524 87431581 -56850908 + L1MA4 LINE L1 6236 6292 -8 1810 255 85 104 chr12 87431601 87432156 -56850333 - L2 LINE L2 -612 2702 2105 238 188 266 0 chr12 87432156 87432220 -56850269 + LTR48 LTR ERV1 289 369 -418 1810 255 85 104 chr12 87432220 87432494 -56849995 - L2 LINE L2 -1209 2105 1827 218 275 113 63 chr12 87432503 87432568 -56849921 - L2 LINE L2 -1588 1726 1666 3083 139 45 10 chr12 87432568 87433077 -56849412 + MER1A DNA MER1_type 1 527 0 218 275 113 63 chr12 87433077 87433153 -56849336 - L2 LINE L2 -1648 1666 1578 222 37 0 0 chr12 87434175 87434202 -56848287 + (A)n Simple_repeat Simple_repeat 1 27 0 1554 183 0 4 chr12 87437456 87437718 -56844771 + AluSx SINE Alu 1 261 -51 25 31 0 0 chr12 87437724 87437756 -56844733 + AT_rich Low_complexity Low_complexity 1 32 0 3717 155 36 12 chr12 87438353 87438992 -56843497 + MER50 LTR ERV1 69 722 -12 184 196 18 18 chr12 87440301 87440357 -56842132 + (TA)n Simple_repeat Simple_repeat 1 56 0 26 74 0 0 chr12 87440358 87440412 -56842077 + AT_rich Low_complexity Low_complexity 1 54 0 26 74 0 0 chr12 87441087 87441141 -56841348 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr12 87441835 87441857 -56840632 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr12 87442044 87442076 -56840413 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr12 87442280 87442329 -56840160 + AT_rich Low_complexity Low_complexity 1 49 0 508 324 99 35 chr12 87442667 87442817 -56839672 + L2 LINE L2 2599 2738 -575 1994 104 7 0 chr12 87442817 87443143 -56839346 + AluSx SINE Alu 1 328 0 508 324 99 35 chr12 87443143 87443404 -56839085 + L2 LINE L2 2738 3041 -272 22 35 0 0 chr12 87443895 87443924 -56838565 + AT_rich Low_complexity Low_complexity 1 29 0 222 217 0 0 chr12 87444146 87444192 -56838297 + L2 LINE L2 3223 3268 -4 1606 218 22 32 chr12 87444918 87445318 -56837171 + MSTD LTR MaLR 1 396 0 910 207 113 85 chr12 87445517 87445870 -56836619 + MLT1A1 LTR MaLR 1 363 -2 418 273 164 52 chr12 87446342 87446672 -56835817 + MLT1K LTR MaLR 213 579 -9 386 289 196 22 chr12 87447297 87447619 -56834870 - L2 LINE L2 0 3313 2936 288 282 153 0 chr12 87447836 87447967 -56834522 - L2 LINE L2 0 3313 3163 261 284 0 0 chr12 87447993 87448067 -56834422 - MIR SINE MIR -3 259 186 303 125 0 0 chr12 87448135 87448183 -56834306 + MADE1 DNA Mariner 33 80 0 270 326 47 31 chr12 87448254 87448383 -56834106 + MIR SINE MIR 48 178 -84 357 287 50 0 chr12 87448754 87448855 -56833634 + L2 LINE L2 3201 3306 -7 533 333 69 14 chr12 87449561 87449777 -56832712 - MIR SINE MIR 0 262 35 195 120 0 0 chr12 87450791 87450816 -56831673 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 87450817 87450839 -56831650 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr12 87451587 87451619 -56830870 + (A)n Simple_repeat Simple_repeat 1 32 0 432 0 0 0 chr12 87451619 87451667 -56830822 + (TA)n Simple_repeat Simple_repeat 2 49 0 27 49 0 0 chr12 87453361 87453402 -56829087 + AT_rich Low_complexity Low_complexity 1 41 0 180 316 35 88 chr12 87454153 87454324 -56828165 - MIR3 SINE MIR -17 191 30 * 183 309 96 21 chr12 87454267 87454361 -56828128 + MIR3 SINE MIR 69 169 -39 463 275 118 11 chr12 87454388 87454566 -56827923 - MIR SINE MIR 0 262 66 1314 183 77 0 chr12 87454810 87455084 -56827405 + MER58B DNA MER1_type 47 341 0 530 332 77 16 chr12 87455575 87455822 -56826667 + MIR SINE MIR 1 262 0 3242 273 41 27 chr12 87456221 87458327 -56824162 + L1M2a LINE L1 1555 3407 -3941 444 207 9 9 chr12 87458330 87458446 -56824043 + L1M2a LINE L1 3310 3425 -3742 341 300 0 0 chr12 87458456 87458546 -56823943 + L1MC4 LINE L1 6614 6703 -1339 237 132 0 0 chr12 87458546 87458584 -56823905 + (TA)n Simple_repeat Simple_repeat 2 39 0 1255 281 77 7 chr12 87458584 87458989 -56823500 + MLT-int LTR MaLR 262 694 -1041 1256 94 99 38 chr12 87458991 87459204 -56823285 - THE1B LTR MaLR -138 226 1 540 159 62 26 chr12 87459204 87459293 -56823196 - MSTD LTR MaLR -302 94 2 22 0 0 0 chr12 87459311 87459333 -56823156 + AT_rich Low_complexity Low_complexity 1 22 0 4612 205 41 11 chr12 87459333 87460459 -56822030 + L1M2a LINE L1 4308 5466 -1701 241 263 91 51 chr12 87460565 87460740 -56821749 - L1M4 LINE L1 -1496 4650 4469 455 280 100 14 chr12 87461001 87461205 -56821284 + MLT1J LTR MaLR 47 233 -213 252 341 11 0 chr12 87461429 87461517 -56820972 + MIR SINE MIR 63 151 -111 1851 110 3 95 chr12 87461746 87462083 -56820406 - AluSg SINE Alu -4 306 1 588 281 130 5 chr12 87462881 87463073 -56819416 + MIR SINE MIR 36 251 -11 632 259 23 33 chr12 87463974 87464217 -56818272 + MER77 LTR ERV1 348 599 -6 243 0 0 0 chr12 87464410 87464437 -56818052 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 323 335 51 66 chr12 87464977 87465234 -56817255 + MIR SINE MIR 10 262 0 314 370 28 51 chr12 87465515 87465731 -56816758 - MIR SINE MIR -32 230 20 315 0 0 0 chr12 87468271 87468306 -56814183 + (TC)n Simple_repeat Simple_repeat 1 35 0 26 64 0 0 chr12 87469276 87469323 -56813166 + AT_rich Low_complexity Low_complexity 1 47 0 743 150 28 67 chr12 87469833 87470013 -56812476 - L1MB3 LINE L1 -10 6173 6001 540 254 0 0 chr12 87470033 87470147 -56812342 - FLAM_A SINE Alu -19 114 1 2215 96 24 0 chr12 87470210 87470503 -56811986 - AluSg SINE Alu -10 300 1 279 280 13 13 chr12 87470528 87470603 -56811886 + L2 LINE L2 3230 3304 -9 223 367 115 24 chr12 87470855 87471228 -56811261 + L2 LINE L2 2804 3210 -103 26 30 0 0 chr12 87472707 87472740 -56809749 + AT_rich Low_complexity Low_complexity 1 33 0 363 361 82 6 chr12 87472914 87473072 -56809417 - MER91A DNA MER1_type -8 188 19 255 61 0 0 chr12 87473318 87473351 -56809138 + (GA)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr12 87473711 87473732 -56808757 + AT_rich Low_complexity Low_complexity 1 21 0 1902 162 0 10 chr12 87473742 87474056 -56808433 + AluJb SINE Alu 2 312 0 2228 76 0 14 chr12 87474987 87475275 -56807214 - AluY SINE Alu -27 284 1 2054 102 0 14 chr12 87475930 87476250 -56806239 + AluSg SINE Alu 1 316 0 22 35 0 0 chr12 87476384 87476413 -56806076 + AT_rich Low_complexity Low_complexity 1 29 0 1454 171 7 19 chr12 87476417 87476726 -56805763 - L1MA4 LINE L1 -5 6295 5991 330 26 0 0 chr12 87476890 87476929 -56805560 + (TC)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr12 87476929 87476954 -56805535 + AT_rich Low_complexity Low_complexity 1 25 0 361 220 17 8 chr12 87477015 87477133 -56805356 + (TA)n Simple_repeat Simple_repeat 1 119 0 189 0 0 0 chr12 87478556 87478577 -56803912 + (TA)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr12 87479117 87479138 -56803351 + AT_rich Low_complexity Low_complexity 1 21 0 459 0 0 0 chr12 87480591 87480642 -56801847 + (TA)n Simple_repeat Simple_repeat 2 52 0 431 283 28 62 chr12 87480863 87481040 -56801449 - MIR SINE MIR 0 262 92 2388 25 7 0 chr12 87481616 87481895 -56800594 - AluY SINE Alu -30 281 1 22 70 0 0 chr12 87482168 87482211 -56800278 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr12 87482410 87482442 -56800047 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr12 87482965 87482988 -56799501 + (GA)n Simple_repeat Simple_repeat 1 23 0 1024 58 0 0 chr12 87484760 87484881 -56797608 + AluY SINE Alu 2 122 -189 591 339 76 46 chr12 87485087 87485547 -56796942 + L2 LINE L2 2839 3312 -1 319 272 10 10 chr12 87485960 87486063 -56796426 + L2 LINE L2 966 1068 -2246 915 281 88 88 chr12 87486066 87486603 -56795886 + L2 LINE L2 2538 3085 -228 7388 38 8 2 chr12 87487381 87488624 -56793865 - L1PA5 LINE L1 0 6154 4910 224 167 0 19 chr12 87488840 87488894 -56793595 + (CA)n Simple_repeat Simple_repeat 2 54 0 246 95 0 0 chr12 87489839 87489881 -56792608 + (CA)n Simple_repeat Simple_repeat 1 42 0 2118 4 0 0 chr12 87490741 87490980 -56791509 - L1PA2 LINE L1 -4 6151 5913 26 82 0 0 chr12 87491380 87491441 -56791048 + AT_rich Low_complexity Low_complexity 1 61 0 1801 164 7 13 chr12 87491678 87491988 -56790501 + AluJo SINE Alu 1 308 -4 344 263 196 23 chr12 87492115 87492248 -56790241 + MIR SINE MIR 61 216 -46 27 29 0 0 chr12 87492562 87492596 -56789893 + AT_rich Low_complexity Low_complexity 1 34 0 1016 165 0 0 chr12 87492599 87492757 -56789732 - AluSg/x SINE Alu -20 290 133 627 261 28 17 chr12 87493513 87493693 -56788796 + MIR SINE MIR 6 187 -75 1754 144 72 0 chr12 87494692 87495027 -56787462 - AluSx SINE Alu 0 356 1 363 242 97 75 chr12 87496083 87496269 -56786220 + L2 LINE L2 3112 3301 -12 24 32 0 0 chr12 87496501 87496532 -56785957 + AT_rich Low_complexity Low_complexity 1 31 0 231 235 37 88 chr12 87497227 87497363 -56785126 + L1ME4a LINE L1 5991 6119 -2 198 345 139 6 chr12 87497516 87497681 -56784808 - MIR SINE MIR -11 251 65 1739 147 68 40 chr12 87497839 87498193 -56784296 + THE1B LTR MaLR 1 364 0 596 280 129 5 chr12 87498475 87498668 -56783821 - MIR SINE MIR -10 252 36 277 200 46 15 chr12 87498972 87499037 -56783452 - MIR SINE MIR -56 152 86 303 240 96 67 chr12 87499168 87499272 -56783217 - L2 LINE L2 -3 3310 3204 274 292 77 39 chr12 87499640 87499770 -56782719 + L2 LINE L2 3179 3313 0 244 83 42 0 chr12 87499988 87500036 -56782453 + (TA)n Simple_repeat Simple_repeat 2 51 0 186 43 0 0 chr12 87500258 87500281 -56782208 + (TATG)n Simple_repeat Simple_repeat 2 24 0 248 87 0 0 chr12 87500285 87500331 -56782158 + LTR66 LTR ERVL 394 439 -171 382 333 0 11 chr12 87500801 87500981 -56781508 + L1MC4a LINE L1 5727 5904 -1904 296 330 0 37 chr12 87501355 87501464 -56781025 - L2 LINE L2 -13 3300 3196 575 181 9 52 chr12 87501840 87501956 -56780533 - FLAM_C SINE Alu -32 111 1 270 282 162 17 chr12 87501963 87502080 -56780409 - MIR SINE MIR -5 257 124 333 197 23 38 chr12 87504522 87504654 -56777835 + ORSL DNA AcHobo 5 134 -141 30 27 0 0 chr12 87504658 87504695 -56777794 + AT_rich Low_complexity Low_complexity 1 37 0 901 114 8 0 chr12 87505140 87505272 -56777217 + AluSq/x SINE Alu 1 133 -180 207 0 0 0 chr12 87506359 87506382 -56776107 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 183 301 0 108 chr12 87507006 87507099 -56775390 - L2 LINE L2 -4 3268 3186 258 402 8 0 chr12 87507207 87507329 -56775160 - L2 LINE L2 -238 3034 2912 501 241 0 0 chr12 87507336 87507448 -56775041 + L1MB8 LINE L1 5021 5132 -1014 1429 191 55 31 chr12 87507463 87507828 -56774661 + MLT1A2 LTR MaLR 1 505 0 2435 206 40 0 chr12 87507832 87508427 -56774062 + L1MB8 LINE L1 5152 5768 -416 3801 170 1 40 chr12 87508469 87508826 -56773663 - L1MB1 LINE L1 -18 6171 5857 1281 208 13 40 chr12 87508826 87509053 -56773436 - AluJo SINE Alu 0 312 124 207 0 0 0 chr12 87509053 87509076 -56773413 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1281 208 13 40 chr12 87509076 87509197 -56773292 - AluJo SINE Alu -188 124 1 3801 170 1 40 chr12 87509197 87509598 -56772891 - L1MB1 LINE L1 -332 5857 5442 572 158 8 55 chr12 87509595 87509722 -56772767 + L1MA10 LINE L1 6176 6296 -38 * 1565 196 34 16 chr12 87509726 87510114 -56772375 + L1MB8 LINE L1 5782 6176 -2 217 26 26 51 chr12 87510481 87510520 -56771969 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2059 123 0 3 chr12 87510859 87511161 -56771328 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr12 87511871 87511893 -56770596 + AT_rich Low_complexity Low_complexity 1 22 0 1628 181 0 10 chr12 87511897 87512190 -56770299 - AluSx SINE Alu -22 290 1 884 163 0 0 chr12 87512190 87512325 -56770164 - AluSq/x SINE Alu -177 135 1 182 425 11 0 chr12 87512886 87512973 -56769516 + L2 LINE L2 3150 3237 -35 478 279 124 28 chr12 87513127 87513417 -56769072 - L1MEd LINE L1 -5247 872 555 1736 87 8 0 chr12 87513443 87513684 -56768805 - AluY SINE Alu -8 303 61 240 275 110 0 chr12 87513988 87514079 -56768410 - L1MEd LINE L1 -6015 104 4 4341 82 10 0 chr12 87514364 87514962 -56767527 + L1PA10 LINE L1 5564 6167 -1 194 193 105 18 chr12 87515012 87515069 -56767420 + L3 LINE CR1 1219 1280 -297 20696 120 14 18 chr12 87515204 87518573 -56763916 - L1PA7 LINE L1 -2062 5522 1380 8961 81 6 3 chr12 87518568 87520614 -56761875 + L1PA7 LINE L1 5523 7570 -22 * 2602 199 81 11 chr12 87520830 87521437 -56761052 + L1MB7 LINE L1 5528 6176 -8 346 267 62 34 chr12 87522633 87522779 -56759710 + L1ME4a LINE L1 5750 5899 -222 24 0 0 0 chr12 87523113 87523137 -56759352 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 87523655 87523677 -56758812 + AT_rich Low_complexity Low_complexity 1 22 0 684 259 25 46 chr12 87523848 87524087 -56758402 - MIR SINE MIR -26 236 3 615 299 20 33 chr12 87524965 87525209 -56757280 + MIR SINE MIR 7 247 -15 204 40 0 0 chr12 87525209 87525234 -56757255 + (TTA)n Simple_repeat Simple_repeat 1 25 0 300 370 60 42 chr12 87526332 87526548 -56755941 + L2 LINE L2 2935 3154 -118 204 196 36 0 chr12 87526961 87527017 -56755472 + (TA)n Simple_repeat Simple_repeat 2 59 0 1197 217 136 9 chr12 87529179 87529511 -56752978 + MLT1A2 LTR MaLR 1 374 0 2275 277 118 50 chr12 87529993 87531455 -56751034 - L2 LINE L2 0 3313 1952 255 31 0 0 chr12 87531455 87531487 -56751002 + (TG)n Simple_repeat Simple_repeat 2 33 0 309 51 0 0 chr12 87531488 87531527 -56750962 + (TA)n Simple_repeat Simple_repeat 1 39 0 2275 277 118 50 chr12 87531527 87531549 -56750940 - L2 LINE L2 -1360 1953 1670 189 317 218 0 chr12 87531559 87531701 -56750788 - L2 LINE L2 -1836 1478 1306 7629 26 1 0 chr12 87531701 87532837 -56749652 + L1PA3 LINE L1 5014 6152 -3 764 248 161 27 chr12 87532873 87533256 -56749233 - Charlie2 DNA MER1_type -5 2857 2375 1693 181 0 34 chr12 87533256 87533568 -56748921 + AluJo SINE Alu 1 302 0 764 248 161 27 chr12 87533568 87533736 -56748753 - Charlie2 DNA MER1_type -487 2375 2231 313 313 0 0 chr12 87533797 87533880 -56748609 - Charlie2 DNA MER1_type -2564 298 216 383 249 59 67 chr12 87534074 87534327 -56748162 + L1MC4 LINE L1 7695 7945 -97 2325 101 3 0 chr12 87535264 87535572 -56746917 - AluSp SINE Alu -4 309 1 2074 179 63 26 chr12 87535856 87536315 -56746174 - L1MD3 LINE L1 -15 7980 7505 2128 104 0 0 chr12 87536326 87536655 -56745834 - AluSg SINE Alu 0 330 2 336 311 60 13 chr12 87537299 87537450 -56745039 - MIR SINE MIR -40 222 65 188 65 0 32 chr12 87537550 87537581 -56744908 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 240 281 12 24 chr12 87537819 87537901 -56744588 + MLT1I LTR MaLR 26 106 -303 209 343 14 0 chr12 87538059 87538132 -56744357 + L2 LINE L2 3194 3267 -5 920 267 92 34 chr12 87538704 87539324 -56743165 + L2 LINE L2 2653 3312 -1 376 251 45 123 chr12 87540099 87540278 -56742211 - MER5B DNA MER1_type -5 173 9 265 200 17 33 chr12 87540338 87540398 -56742091 - L2 LINE L2 0 3313 3255 216 67 0 0 chr12 87540956 87540986 -56741503 + (TTTTTA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr12 87541460 87541484 -56741005 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr12 87541808 87541844 -56740645 + AT_rich Low_complexity Low_complexity 1 36 0 6406 58 5 3 chr12 87541934 87542802 -56739687 + L1PA7 LINE L1 5196 6065 -89 330 267 19 38 chr12 87542811 87542916 -56739573 - MER5B DNA MER1_type -68 110 8 760 31 0 0 chr12 87542922 87543018 -56739471 + L1PA8 LINE L1 6077 6172 0 201 373 63 8 chr12 87544171 87544297 -56738192 + L2 LINE L2 3180 3312 -1 194 378 122 26 chr12 87544300 87544456 -56738033 - L3 LINE CR1 -398 1179 1009 1045 177 16 10 chr12 87544461 87544653 -56737836 - MER58A DNA MER1_type -6 218 26 755 224 46 15 chr12 87544663 87544859 -56737630 + MER105 DNA DNA 1 202 -2 291 273 251 21 chr12 87544861 87545048 -56737441 - L3 LINE CR1 -561 1016 787 765 306 107 4 chr12 87545250 87545531 -56736958 + L2 LINE L2 2433 2742 -572 2369 92 3 0 chr12 87545974 87546280 -56736209 + AluSp SINE Alu 1 307 -6 2410 18 0 0 chr12 87546348 87546628 -56735861 - L1PA3 LINE L1 0 6155 5876 1815 19 0 0 chr12 87546628 87546837 -56735652 + L1PA3 LINE L1 5683 5891 -264 25 31 0 0 chr12 87547863 87547895 -56734594 + AT_rich Low_complexity Low_complexity 1 32 0 366 333 41 0 chr12 87548198 87548345 -56734144 - MIR SINE MIR -1 261 109 194 374 36 65 chr12 87549317 87549456 -56733033 + L2 LINE L2 3138 3272 0 198 331 71 16 chr12 87549648 87549775 -56732714 + MIR SINE MIR 116 249 -13 193 378 58 44 chr12 87549845 87550120 -56732369 + L2 LINE L2 2636 2914 -400 2213 128 6 19 chr12 87550279 87550645 -56731844 - L1PB2 LINE L1 -2 6149 5789 3471 109 10 2 chr12 87550646 87551260 -56731229 + L1PB2 LINE L1 5153 5770 -381 706 192 62 0 chr12 87551258 87551404 -56731085 - L1MD3 LINE L1 -10 7985 7831 * 28 0 0 0 chr12 87552480 87552508 -56729981 + AT_rich Low_complexity Low_complexity 1 28 0 272 352 109 22 chr12 87553373 87553603 -56728886 + L2 LINE L2 2309 2558 -756 216 317 106 21 chr12 87553896 87554038 -56728451 + MIR SINE MIR 48 201 -61 23 33 0 0 chr12 87554101 87554131 -56728358 + AT_rich Low_complexity Low_complexity 1 30 0 1591 180 146 15 chr12 87554139 87554550 -56727939 + MLT1C LTR MaLR 1 465 -2 996 304 87 67 chr12 87555543 87555675 -56726814 + L2 LINE L2 469 597 -2717 1245 55 43 0 chr12 87555675 87555839 -56726650 + L1PA5 LINE L1 5983 6153 -1 996 304 87 67 chr12 87555839 87556301 -56726188 + L2 LINE L2 597 1075 -2239 395 335 44 19 chr12 87556434 87556592 -56725897 + L2 LINE L2 3152 3313 0 3659 176 35 26 chr12 87557532 87558227 -56724262 - MER44D DNA MER2_type -4 701 1 227 350 21 0 chr12 87558306 87558403 -56724086 - L2 LINE L2 -1 3312 3214 199 348 99 33 chr12 87558506 87558687 -56723802 - L2 LINE L2 -386 2928 2736 1817 62 40 44 chr12 87559302 87559574 -56722915 + AluY SINE Alu 30 300 -11 836 286 91 4 chr12 87560583 87560959 -56721530 - MLT1J1 LTR MaLR 0 446 1 2399 234 112 32 chr12 87561800 87562508 -56719981 + MLT1A1-int LTR MaLR 972 1735 0 1740 193 28 17 chr12 87562512 87562869 -56719620 + MLT1A1 LTR MaLR 5 365 0 1296 242 209 9 chr12 87563035 87563461 -56719028 + MLT1E1 LTR MaLR 144 654 0 21 0 0 0 chr12 87563707 87563728 -56718761 + AT_rich Low_complexity Low_complexity 1 21 0 303 216 112 22 chr12 87564141 87564275 -56718214 + MLT1K LTR MaLR 435 580 -8 303 289 43 103 chr12 87564958 87565211 -56717278 + L2 LINE L2 1618 1855 -1459 424 310 138 56 chr12 87565237 87565409 -56717080 + L2 LINE L2 2967 3124 -189 1729 178 54 20 chr12 87565409 87565758 -56716731 + MLT1A1 LTR MaLR 5 365 0 424 310 138 56 chr12 87565758 87565904 -56716585 + L2 LINE L2 3124 3311 -2 21 36 0 0 chr12 87566358 87566386 -56716103 + AT_rich Low_complexity Low_complexity 1 28 0 231 36 0 0 chr12 87567296 87567324 -56715165 + (GA)n Simple_repeat Simple_repeat 1 28 0 915 196 24 129 chr12 87567428 87567529 -56714960 + MER58B DNA MER1_type 3 113 -2307 1264 90 10 20 chr12 87567529 87567729 -56714760 + L1PA13 LINE L1 5962 6159 -4 915 196 24 129 chr12 87567729 87568004 -56714485 + MER58B DNA MER1_type 113 340 -1 516 16 0 0 chr12 87571434 87571495 -56710994 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 180 217 0 0 chr12 87571496 87571542 -56710947 + (TA)n Simple_repeat Simple_repeat 2 47 0 3163 124 6 25 chr12 87571677 87572226 -56710263 + L1MA4A LINE L1 5761 6298 -5 204 40 0 0 chr12 87573374 87573399 -56709090 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 53 0 0 chr12 87574277 87574315 -56708174 + AT_rich Low_complexity Low_complexity 1 38 0 399 125 11 23 chr12 87574422 87574510 -56707979 + (TA)n Simple_repeat Simple_repeat 1 87 0 332 316 115 21 chr12 87575781 87576015 -56706474 + MIR SINE MIR 6 261 -1 2327 281 117 21 chr12 87576089 87577214 -56705275 - L2 LINE L2 -39 3274 2042 664 210 93 19 chr12 87577218 87577380 -56705109 + MER5A DNA MER1_type 16 189 0 299 65 22 0 chr12 87577789 87577835 -56704654 + (GA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr12 87578308 87578337 -56704152 + AT_rich Low_complexity Low_complexity 1 29 0 1120 197 9 0 chr12 87579526 87579744 -56702745 + L1MC3 LINE L1 6371 6590 -1195 655 229 93 39 chr12 87579777 87580198 -56702291 + MLT1D LTR MaLR 27 503 -2 501 222 9 0 chr12 87580209 87580317 -56702172 + L1MC3 LINE L1 6594 6702 -1083 1213 204 50 53 chr12 87580323 87580705 -56701784 + MER67C LTR ERV1 1 403 -243 265 262 103 9 chr12 87580717 87580824 -56701665 + MER67D LTR ERV1 359 475 -39 3596 143 105 127 chr12 87580873 87581309 -56701180 + L1MC3 LINE L1 6705 7149 -636 283 279 13 0 chr12 87581309 87581388 -56701101 + MLT1F1 LTR MaLR 35 114 -453 3596 143 105 127 chr12 87581388 87581978 -56700511 + L1MC3 LINE L1 7149 7785 0 236 232 183 0 chr12 87582226 87582308 -56700181 + MER20B DNA MER1_type 178 274 -509 2293 98 3 0 chr12 87583584 87583889 -56698600 + AluSx SINE Alu 1 306 -6 231 282 24 0 chr12 87584200 87584285 -56698204 + MER20B DNA MER1_type 283 369 -414 552 256 54 57 chr12 87584345 87584642 -56697847 + MER20B DNA MER1_type 488 783 0 1700 101 4 0 chr12 87585104 87585341 -56697148 - AluSp SINE Alu 0 313 76 436 373 70 17 chr12 87585722 87585963 -56696526 - MIR SINE MIR -6 256 3 620 254 0 7 chr12 87586235 87586373 -56696116 - FLAM_A SINE Alu -5 137 1 351 325 78 71 chr12 87587845 87588128 -56694361 - L2 LINE L2 -56 3216 2932 376 320 87 45 chr12 87588531 87588843 -56693646 - L2 LINE L2 -1153 2161 1837 207 271 21 0 chr12 87588919 87588967 -56693522 + L2 LINE L2 3224 3272 0 207 212 45 0 chr12 87589155 87589221 -56693268 + A-rich Low_complexity Low_complexity 2 70 0 529 170 385 0 chr12 87589252 87589387 -56693102 - MER2 DNA MER2_type -156 189 3 38 61 0 0 chr12 87589790 87589856 -56692633 + AT_rich Low_complexity Low_complexity 1 66 0 420 333 104 52 chr12 87590686 87591013 -56691476 - L2 LINE L2 -5 3267 2924 491 277 98 65 chr12 87591074 87591603 -56690886 + MLT1G1 LTR MaLR 2 538 -4 284 303 83 35 chr12 87593640 87593785 -56688704 - MER5B DNA MER1_type 0 178 27 22 56 0 0 chr12 87594651 87594687 -56687802 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr12 87594726 87594747 -56687742 + AT_rich Low_complexity Low_complexity 1 21 0 210 143 0 0 chr12 87594935 87594970 -56687519 + (CA)n Simple_repeat Simple_repeat 2 36 0 182 356 34 0 chr12 87595053 87595112 -56687377 + L2 LINE L2 3158 3218 -54 203 327 0 0 chr12 87597018 87597073 -56685416 + (TG)n Simple_repeat Simple_repeat 1 55 0 258 81 0 0 chr12 87597978 87598015 -56684474 + (TG)n Simple_repeat Simple_repeat 1 37 0 216 86 0 0 chr12 87598015 87598050 -56684439 + (GA)n Simple_repeat Simple_repeat 2 36 0 2849 3 0 0 chr12 87600306 87600616 -56681873 + AluYa5 SINE Alu 1 310 -1 337 314 122 23 chr12 87601997 87602169 -56680320 - MIR3 SINE MIR -3 205 17 6865 54 0 2 chr12 87602214 87603049 -56679440 + HERVL LTR ERVL 37 869 -4785 1539 38 124 0 chr12 87603049 87603221 -56679268 + MLT2A1 LTR ERVL 209 413 -31 254 95 24 0 chr12 87603221 87603263 -56679226 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 1539 38 124 0 chr12 87603263 87603300 -56679189 + MLT2A1 LTR ERVL 413 444 0 2122 110 0 31 chr12 87603982 87604301 -56678188 + AluSc SINE Alu 1 309 0 2264 71 0 10 chr12 87604793 87605089 -56677400 - AluY SINE Alu -18 293 1 1234 296 55 56 chr12 87605147 87605768 -56676721 + MER21B LTR ERV1 95 714 -149 25 65 0 0 chr12 87606650 87606696 -56675793 + AT_rich Low_complexity Low_complexity 1 46 0 350 284 57 62 chr12 87607455 87607666 -56674823 - MIR SINE MIR -3 259 50 66 50 0 0 chr12 87608417 87608518 -56673971 + AT_rich Low_complexity Low_complexity 1 101 0 438 264 171 19 chr12 87609191 87609407 -56673082 + MIR SINE MIR 3 251 -11 792 237 58 157 chr12 87609816 87610319 -56672170 + L2 LINE L2 2858 3310 -3 783 265 76 50 chr12 87610436 87610753 -56671736 + L1MC4 LINE L1 6745 7069 -973 180 0 0 0 chr12 87610754 87610774 -56671715 + (GA)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr12 87611532 87611560 -56670929 + AT_rich Low_complexity Low_complexity 1 28 0 429 335 80 31 chr12 87613229 87613474 -56669015 - L2 LINE L2 -8 3305 3043 806 249 106 86 chr12 87613474 87613975 -56668514 - MLT1J LTR MaLR 0 511 1 429 335 80 31 chr12 87613975 87614016 -56668473 - L2 LINE L2 -270 3043 3005 2129 288 122 33 chr12 87614549 87615682 -56666807 - L2 LINE L2 -4 3309 2055 381 189 47 20 chr12 87618039 87618187 -56664302 + (TA)n Simple_repeat Simple_repeat 2 153 0 252 79 53 26 chr12 87618206 87618282 -56664207 + (TA)n Simple_repeat Simple_repeat 2 79 0 1920 143 15 0 chr12 87618282 87618611 -56663878 + L1PB3 LINE L1 5821 6154 0 203 189 19 0 chr12 87618737 87618790 -56663699 + (TA)n Simple_repeat Simple_repeat 2 55 0 235 160 27 27 chr12 87619452 87619527 -56662962 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 1413 198 3 48 chr12 87620707 87621060 -56661429 + L1MA4 LINE L1 5957 6293 -7 181 255 157 0 chr12 87621921 87621972 -56660517 + MIR3 SINE MIR 108 166 -42 1992 140 10 7 chr12 87622002 87622302 -56660187 - AluSx SINE Alu -9 303 3 34 65 0 0 chr12 87622790 87622852 -56659637 + AT_rich Low_complexity Low_complexity 1 62 0 2072 218 68 2 chr12 87623444 87623911 -56658578 + MLT1D LTR MaLR 1 498 -7 296 320 16 39 chr12 87623933 87624061 -56658428 - LTR67 LTR ERVL -337 220 96 24 53 0 0 chr12 87624393 87624431 -56658058 + AT_rich Low_complexity Low_complexity 1 38 0 1703 169 7 3 chr12 87624525 87624821 -56657668 - AluJb SINE Alu -15 297 1 245 345 7 43 chr12 87625424 87625563 -56656926 + MIR SINE MIR 127 260 -2 224 333 26 39 chr12 87626702 87626780 -56655709 - MIR SINE MIR -161 101 25 271 334 34 106 chr12 87626951 87627301 -56655188 - L2 LINE L2 -15 3257 2933 791 179 12 6 chr12 87628317 87628479 -56654010 - L1MDa LINE L1 -4358 2182 2020 712 257 62 76 chr12 87629027 87629539 -56652950 - MLT1G3 LTR MaLR -33 497 7 225 0 0 0 chr12 87629547 87629572 -56652917 + (CA)n Simple_repeat Simple_repeat 1 25 0 2721 10 0 0 chr12 87629890 87630191 -56652298 - AluY SINE Alu -10 301 1 1896 136 0 0 chr12 87630277 87630550 -56651939 - AluSx SINE Alu -10 302 30 1414 146 21 110 chr12 87630695 87631031 -56651458 - AluYb8 SINE Alu -12 306 1 23 0 0 0 chr12 87632020 87632043 -56650446 + AT_rich Low_complexity Low_complexity 1 23 0 2798 7 0 0 chr12 87632305 87632614 -56649875 - AluYa5 SINE Alu -2 309 1 23 0 0 0 chr12 87633167 87633190 -56649299 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr12 87633581 87633616 -56648873 + AT_rich Low_complexity Low_complexity 1 35 0 266 301 16 65 chr12 87634434 87634557 -56647932 - MIR SINE MIR -56 206 90 1120 132 35 5 chr12 87634599 87634796 -56647693 - L1MA4 LINE L1 -5 6295 6093 803 290 61 35 chr12 87635010 87635447 -56647042 + MLT1H LTR MaLR 12 509 -40 205 214 0 18 chr12 87635717 87635773 -56646716 + (TA)n Simple_repeat Simple_repeat 1 55 0 181 283 38 0 chr12 87635948 87636001 -56646488 + MIR SINE MIR 83 137 -71 613 186 34 4 chr12 87636215 87636479 -56646010 + (TA)n Simple_repeat Simple_repeat 1 271 0 255 147 77 24 chr12 87636553 87636723 -56645766 + (TA)n Simple_repeat Simple_repeat 2 180 0 22 35 0 0 chr12 87636771 87636800 -56645689 + AT_rich Low_complexity Low_complexity 1 29 0 208 347 14 0 chr12 87637212 87637284 -56645205 + L3 LINE CR1 474 546 -1031 28 48 0 0 chr12 87637354 87637396 -56645093 + AT_rich Low_complexity Low_complexity 1 42 0 271 182 26 13 chr12 87638783 87638860 -56643629 + GA-rich Low_complexity Low_complexity 2 79 0 1075 258 18 36 chr12 87639114 87639498 -56642991 + L1MCc LINE L1 17 393 -6030 1112 303 21 47 chr12 87639966 87640477 -56642012 + L1MCc LINE L1 817 1314 -5109 236 75 0 25 chr12 87640477 87640517 -56641972 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 586 288 28 52 chr12 87640555 87640981 -56641508 + L1MCc LINE L1 1351 1932 -4999 348 269 59 17 chr12 87640985 87641104 -56641385 + L1MCc LINE L1 2040 2163 -4959 2300 78 0 0 chr12 87641107 87641391 -56641098 + AluY SINE Alu 1 284 -27 463 24 97 16 chr12 87641391 87641515 -56640974 + (TA)n Simple_repeat Simple_repeat 1 134 0 273 250 68 23 chr12 87641571 87641659 -56640830 + HAL1 LINE L1 1502 1593 -914 421 253 80 46 chr12 87641677 87641914 -56640575 + L1M4 LINE L1 3760 4004 -2142 2175 233 73 27 chr12 87641981 87642894 -56639595 + L1M4 LINE L1 4254 5302 -844 1478 266 47 41 chr12 87644451 87644988 -56637501 - MLT1F LTR MaLR 0 542 3 183 156 0 0 chr12 87644996 87645028 -56637461 + (CAT)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr12 87645168 87645191 -56637298 + AT_rich Low_complexity Low_complexity 1 23 0 453 191 154 18 chr12 87645286 87645396 -56637093 - MIR SINE MIR -71 191 67 267 304 163 15 chr12 87646470 87646605 -56635884 + MER5A DNA MER1_type 35 189 0 407 313 7 28 chr12 87646829 87646973 -56635516 - MIR SINE MIR -34 228 88 46 33 0 0 chr12 87647184 87647244 -56635245 + AT_rich Low_complexity Low_complexity 1 60 0 362 293 114 44 chr12 87648073 87648346 -56634143 + L2 LINE L2 2994 3285 -28 222 37 0 0 chr12 87648368 87648395 -56634094 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 201 345 50 36 chr12 87648907 87649046 -56633443 - L3b LINE CR1 -340 1243 1103 1242 190 47 18 chr12 87651144 87651423 -56631066 - Tigger3b DNA MER2_type 0 1231 945 406 112 81 0 chr12 87651427 87651726 -56630763 + (TA)n Simple_repeat Simple_repeat 1 323 0 5530 136 22 36 chr12 87651726 87652735 -56629754 - Tigger3b DNA MER2_type -236 995 1 286 367 57 33 chr12 87653588 87653776 -56628713 - MIR SINE MIR -38 224 29 1528 147 65 84 chr12 87653776 87654158 -56628331 + THE1C LTR MaLR 1 375 0 286 367 57 33 chr12 87654158 87654179 -56628310 - MIR SINE MIR -233 29 10 325 314 57 29 chr12 87654568 87654708 -56627781 - L2 LINE L2 0 3272 3129 256 299 14 54 chr12 87655050 87655197 -56627292 + L2 LINE L2 2170 2310 -1004 261 336 44 26 chr12 87655738 87655851 -56626638 - L2 LINE L2 -8 3264 3150 186 43 0 0 chr12 87657128 87657151 -56625338 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2182 118 30 28 chr12 87657162 87657525 -56624964 + THE1B LTR MaLR 1 364 0 11000 99 27 0 chr12 87657525 87659064 -56623425 + THE1B-int LTR MaLR 1 1580 0 1894 171 51 20 chr12 87659066 87659416 -56623073 + THE1B LTR MaLR 3 363 -1 1575 192 0 7 chr12 87659416 87659697 -56622792 - AluJb SINE Alu -33 279 1 25 31 0 0 chr12 87659909 87659941 -56622548 + AT_rich Low_complexity Low_complexity 1 32 0 201 377 51 7 chr12 87660280 87660418 -56622071 - L2 LINE L2 -194 3078 2935 1693 143 0 151 chr12 87660525 87660882 -56621607 + Charlie3 DNA MER1_type 31 2706 -4 1721 173 10 3 chr12 87661272 87661578 -56620911 + AluJo SINE Alu 1 308 -4 188 119 0 24 chr12 87661876 87661918 -56620571 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr12 87665546 87665567 -56616922 + AT_rich Low_complexity Low_complexity 1 21 0 2917 252 40 27 chr12 87666074 87666991 -56615498 - L1MC3 LINE L1 -8 7777 6849 239 309 136 0 chr12 87667277 87667387 -56615102 + MLT1I LTR MaLR 48 172 -237 1357 239 99 63 chr12 87668440 87669238 -56613251 - Charlie2 DNA MER1_type -180 2682 1856 478 251 164 46 chr12 87669229 87669492 -56612997 - Charlie2 DNA MER1_type -2532 330 37 * 237 286 55 11 chr12 87669748 87669839 -56612650 + MIR SINE MIR 117 211 -51 189 0 0 0 chr12 87670409 87670430 -56612059 + (A)n Simple_repeat Simple_repeat 1 21 0 210 381 71 8 chr12 87670505 87670631 -56611858 - L2 LINE L2 0 3272 3139 233 342 0 25 chr12 87671912 87672032 -56610457 + GA-rich Low_complexity Low_complexity 4 120 0 500 99 0 12 chr12 87672206 87672287 -56610202 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 14309 233 31 5 chr12 87672430 87677687 -56604802 - L1PA16 LINE L1 -2 7602 2190 472 341 25 42 chr12 87678151 87678553 -56603936 - L1PA16 LINE L1 -6200 1374 980 620 316 13 22 chr12 87678692 87678923 -56603566 - L1PA16 LINE L1 -6558 1016 788 219 265 0 0 chr12 87679066 87679115 -56603374 - L2 LINE L2 0 3313 3265 189 132 38 19 chr12 87679515 87679568 -56602921 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 190 319 0 42 chr12 87680473 87680545 -56601944 + L2 LINE L2 3238 3306 -7 198 103 0 0 chr12 87681570 87681599 -56600890 + (TAA)n Simple_repeat Simple_repeat 2 30 0 219 339 0 0 chr12 87681630 87681689 -56600800 - MIR SINE MIR -141 121 63 2315 273 181 23 chr12 87681876 87682901 -56599588 - L2 LINE L2 -799 2515 1330 414 330 44 35 chr12 87683711 87683914 -56598575 + MIR SINE MIR 8 212 -50 479 312 36 28 chr12 87684242 87684489 -56598000 + L2 LINE L2 2653 2901 -413 410 297 42 42 chr12 87684502 87684738 -56597751 - L2 LINE L2 -2 3311 3076 497 269 209 54 chr12 87684786 87685012 -56597477 + L2 LINE L2 2927 3117 -196 261 0 0 0 chr12 87685012 87685041 -56597448 + (TG)n Simple_repeat Simple_repeat 2 30 0 497 269 209 54 chr12 87685041 87685149 -56597340 + L2 LINE L2 3117 3313 0 2433 49 0 13 chr12 87685285 87685590 -56596899 - AluY SINE Alu -10 301 1 181 129 0 0 chr12 87685606 87685637 -56596852 - L2 LINE L2 0 3313 3283 257 296 23 23 chr12 87685646 87685734 -56596755 - L2 LINE L2 0 3313 3226 2487 58 0 3 chr12 87686636 87686948 -56595541 + AluY SINE Alu 1 311 0 28 0 0 0 chr12 87686977 87687005 -56595484 + AT_rich Low_complexity Low_complexity 1 28 0 465 340 25 13 chr12 87687707 87687866 -56594623 - MIR3 SINE MIR -6 202 42 362 295 115 0 chr12 87688032 87688154 -56594335 + MIR SINE MIR 50 185 -77 2170 262 69 25 chr12 87689444 87689506 -56592983 - L1ME1 LINE L1 -1 6165 6107 2450 72 0 0 chr12 87689506 87689813 -56592676 + AluY SINE Alu 2 308 -3 2170 262 69 25 chr12 87689813 87690472 -56592017 - L1ME1 LINE L1 -59 6107 5412 715 292 193 41 chr12 87690725 87691462 -56591027 + L2 LINE L2 2055 2903 -411 1245 197 154 18 chr12 87691462 87691832 -56590657 - MLT1C LTR MaLR 0 505 6 185 206 59 73 chr12 87691855 87691923 -56590566 + L2 LINE L2 2995 3061 -252 257 267 11 11 chr12 87691997 87692087 -56590402 + (TA)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr12 87692262 87692284 -56590205 + AT_rich Low_complexity Low_complexity 1 22 0 812 229 78 0 chr12 87692730 87692922 -56589567 + MLT1E1 LTR MaLR 448 654 0 1192 350 97 26 chr12 87692922 87694209 -56588280 - L1M4 LINE L1 -2503 3643 2266 263 30 0 0 chr12 87694261 87694294 -56588195 - L1P LINE L1 -4478 1668 1636 445 92 15 0 chr12 87694527 87694592 -56587897 + L1PB4 LINE L1 6080 6145 -11 21 0 0 0 chr12 87694598 87694619 -56587870 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr12 87694846 87694880 -56587609 + AT_rich Low_complexity Low_complexity 1 34 0 2100 129 6 0 chr12 87696073 87696384 -56586105 + AluSp SINE Alu 1 313 0 22 0 0 0 chr12 87696436 87696458 -56586031 + AT_rich Low_complexity Low_complexity 1 22 0 234 137 39 20 chr12 87696730 87696781 -56585708 + L1MC4 LINE L1 6652 6703 -1339 22 0 0 0 chr12 87697044 87697066 -56585423 + AT_rich Low_complexity Low_complexity 1 22 0 42044 51 6 1 chr12 87697164 87703280 -56579209 + L1PA4 LINE L1 1 6151 -4 502 255 45 101 chr12 87703681 87703810 -56578679 - MIR SINE MIR -10 252 144 7461 33 5 0 chr12 87703810 87704859 -56577630 + L1PA4 LINE L1 5103 6155 0 502 255 45 101 chr12 87704859 87704996 -56577493 - MIR SINE MIR -118 144 1 226 412 89 11 chr12 87705240 87705587 -56576902 + L2 LINE L2 200 573 -2741 358 271 131 25 chr12 87707031 87707153 -56575336 - L2 LINE L2 -1 3312 3178 1019 314 223 20 chr12 87707480 87708414 -56574075 - L2 LINE L2 0 3313 2157 303 333 24 16 chr12 87708425 87708551 -56573938 + L2 LINE L2 695 821 -2493 737 318 136 45 chr12 87708615 87709430 -56573059 + L2 LINE L2 1688 2576 -738 236 384 96 19 chr12 87709540 87709811 -56572678 + L2 LINE L2 2576 2867 -447 213 335 63 110 chr12 87709842 87710206 -56572283 + L2 LINE L2 2918 3264 -8 21 0 0 0 chr12 87710421 87710442 -56572047 + AT_rich Low_complexity Low_complexity 1 21 0 1564 153 20 16 chr12 87712505 87712759 -56569730 + AluSx SINE Alu 35 289 -23 258 32 0 0 chr12 87713277 87713308 -56569181 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 30 chr12 87715284 87715302 -56567187 + AT_rich Low_complexity Low_complexity 1 19 -13 2077 174 51 11 chr12 87715302 87715750 -56566739 - L1MA4 LINE L1 0 6300 5835 22 0 0 30 chr12 87715750 87715764 -56566725 + AT_rich Low_complexity Low_complexity 19 32 0 423 304 83 16 chr12 87715858 87716080 -56566409 - MER102b DNA MER1_type -44 297 74 314 306 191 0 chr12 87718333 87718490 -56563999 - MIR SINE MIR -3 259 73 873 299 123 24 chr12 87718554 87718910 -56563579 + REP3 LTR ERV 8 422 -140 878 238 12 0 chr12 87718910 87719082 -56563407 - MER96 DNA MER1_type 0 175 2 873 299 123 24 chr12 87719082 87719190 -56563299 + REP3 LTR ERV 422 518 -44 1738 177 70 21 chr12 87720153 87720525 -56561964 + MLT1B LTR MaLR 1 390 0 1293 300 237 46 chr12 87720782 87721808 -56560681 + L2 LINE L2 1748 2984 -329 1852 153 110 30 chr12 87721808 87722208 -56560281 - MSTB1 LTR MaLR 0 432 1 1293 300 237 46 chr12 87722208 87722254 -56560235 + L2 LINE L2 2984 3020 -293 407 264 62 34 chr12 87722295 87722473 -56560016 - LTR33 LTR ERVL -3 518 336 246 274 32 0 chr12 87722510 87722572 -56559917 + L2 LINE L2 3244 3307 -6 246 360 0 30 chr12 87722750 87722850 -56559639 - MIR3 SINE MIR -102 106 10 606 259 132 18 chr12 87723927 87724155 -56558334 - MIR SINE MIR -1 261 8 554 205 157 54 chr12 87725039 87725205 -56557284 + MER5A DNA MER1_type 6 188 -1 286 330 78 57 chr12 87725208 87725600 -56556889 + L2 LINE L2 2686 3085 -187 272 264 24 5 chr12 87725691 87725788 -56556701 + MIR SINE MIR 17 115 -93 38 0 0 0 chr12 87725838 87725876 -56556613 + AT_rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr12 87726888 87726910 -56555579 + (TA)n Simple_repeat Simple_repeat 2 23 0 23 54 0 0 chr12 87727358 87727395 -56555094 + AT_rich Low_complexity Low_complexity 1 37 0 2058 181 100 24 chr12 87728741 87729210 -56553279 - MLT1D LTR MaLR 0 505 1 22 0 0 0 chr12 87729931 87729953 -56552536 + AT_rich Low_complexity Low_complexity 1 22 0 1126 235 88 59 chr12 87729974 87730169 -56552320 + MLT1F LTR MaLR 1 189 -353 372 59 0 0 chr12 87730169 87730220 -56552269 + (CA)n Simple_repeat Simple_repeat 2 52 0 1126 235 88 59 chr12 87730220 87730548 -56551941 + MLT1F LTR MaLR 189 539 -3 22 0 0 0 chr12 87730615 87730637 -56551852 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 87731008 87731031 -56551458 + AT_rich Low_complexity Low_complexity 1 23 0 2099 164 99 10 chr12 87731301 87731686 -56550803 + MSTA LTR MaLR 10 428 0 8423 180 25 15 chr12 87731686 87733320 -56549169 + MSTA-int LTR MaLR 1 1651 0 2122 188 70 0 chr12 87733320 87733720 -56548769 + MSTA LTR MaLR 1 428 0 590 286 27 5 chr12 87734115 87734300 -56548189 + MIR SINE MIR 18 206 -56 3589 138 4 2 chr12 87735859 87736409 -56546080 + L1PA16 LINE L1 5496 6046 -120 302 310 11 0 chr12 87737532 87737619 -56544870 - MLT1J2 LTR MaLR -291 159 72 462 276 25 14 chr12 87737697 87737867 -56544622 - MIR SINE MIR -62 146 6 21 57 0 0 chr12 87737987 87738022 -56544467 + AT_rich Low_complexity Low_complexity 1 35 0 260 240 112 8 chr12 87738970 87739095 -56543394 + MER113 DNA MER1_type? 36 173 -348 36 40 0 0 chr12 87739130 87739180 -56543309 + AT_rich Low_complexity Low_complexity 1 50 0 229 301 165 8 chr12 87739273 87739406 -56543083 + MER113 DNA MER1_type? 361 514 -7 936 147 12 0 chr12 87740456 87740619 -56541870 + L1MA10 LINE L1 6170 6334 0 1705 192 0 25 chr12 87740769 87741086 -56541403 + AluJb SINE Alu 1 309 -3 287 231 7 42 chr12 87741705 87741848 -56540641 + C-rich Low_complexity Low_complexity 2 139 0 1915 264 98 28 chr12 87742027 87743614 -56538875 - L1ME3 LINE L1 -82 6149 4460 * 2826 210 42 22 chr12 87743598 87744767 -56537722 - L1MB3 LINE L1 -1 6182 4909 498 284 18 27 chr12 87744758 87744980 -56537509 - L1ME3 LINE L1 -1750 4465 4246 * 766 279 76 38 chr12 87745014 87745346 -56537143 - L1ME3 LINE L1 -2060 4155 3837 2167 142 34 3 chr12 87745346 87745699 -56536790 - THE1B LTR MaLR 0 364 1 10114 112 34 16 chr12 87745700 87747251 -56535238 - THE1B-int LTR MaLR -1 1579 1 2243 132 28 3 chr12 87747251 87747606 -56534883 - THE1B LTR MaLR 0 364 1 766 279 76 38 chr12 87747606 87747639 -56534850 - L1ME3 LINE L1 -2377 3838 3773 682 271 70 42 chr12 87747661 87748089 -56534400 - L1ME3 LINE L1 -2535 3680 3241 329 271 24 0 chr12 87748101 87748186 -56534303 + MLT1A2 LTR MaLR 3 89 -285 * 1181 223 25 7 chr12 87748184 87748458 -56534031 + MER2 DNA MER2_type 67 345 0 268 254 40 48 chr12 87748505 87748631 -56533858 + L1MC4 LINE L1 7917 8041 -1 22 56 0 0 chr12 87748860 87748896 -56533593 + AT_rich Low_complexity Low_complexity 1 36 0 347 254 62 67 chr12 87748896 87749435 -56533054 - L1ME3 LINE L1 -3791 2463 1918 312 198 40 40 chr12 87749508 87749609 -56532880 - L1ME3 LINE L1 -4720 1676 1576 271 368 73 17 chr12 87749773 87750061 -56532428 - L2 LINE L2 -1106 2208 1905 279 0 0 0 chr12 87750184 87750215 -56532274 + (TC)n Simple_repeat Simple_repeat 2 32 0 261 57 0 0 chr12 87750214 87750249 -56532240 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 27 49 0 0 chr12 87750263 87750304 -56532185 + AT_rich Low_complexity Low_complexity 1 41 0 315 258 21 43 chr12 87750377 87750470 -56532019 - L1MC4 LINE L1 -1337 6705 6615 2581 163 69 47 chr12 87751284 87751819 -56530670 - MER21A LTR ERV1 -6 925 379 1081 141 126 10 chr12 87751833 87752039 -56530450 - MER21A LTR ERV1 -701 230 1 238 175 0 0 chr12 87752167 87752207 -56530282 + L1MA4A LINE L1 5628 5667 -636 674 52 10 52 chr12 87752207 87752304 -56530185 + MER41B-int LTR ERV1 5853 5945 -1 1332 92 0 0 chr12 87752306 87752490 -56529999 + MER41B LTR ERV1 2 185 -450 1249 27 7 0 chr12 87752490 87752639 -56529850 + MER41A LTR ERV1 296 445 -109 2795 132 33 14 chr12 87752660 87753151 -56529338 + L1MA4A LINE L1 5798 6297 -6 2487 187 65 40 chr12 87753167 87753799 -56528690 + L1MB7 LINE L1 5333 5980 -204 739 223 73 9 chr12 87753801 87754165 -56528324 - MER67D LTR ERV1 0 514 125 1832 303 104 11 chr12 87754166 87755033 -56527456 - L2 LINE L2 -129 3184 2236 1790 316 47 42 chr12 87755122 87755532 -56526957 + HERV16 LTR ERVL 1927 2344 -2652 2391 86 0 0 chr12 87755532 87755836 -56526653 + AluY SINE Alu 1 304 -7 1790 316 47 42 chr12 87755836 87756229 -56526260 + HERV16 LTR ERVL 2344 2734 -2262 931 211 16 5 chr12 87756305 87756499 -56525990 - MLT1A1 LTR MaLR 0 365 170 2095 106 10 3 chr12 87757065 87757366 -56525123 + AluSx SINE Alu 1 303 -9 689 341 119 22 chr12 87757733 87758328 -56524161 - L3 LINE CR1 -188 1389 737 251 286 0 0 chr12 87758613 87758676 -56523813 - MER46C DNA MER2_type -8 330 268 242 96 0 58 chr12 87758676 87758728 -56523761 + (TC)n Simple_repeat Simple_repeat 1 49 0 291 54 0 0 chr12 87758728 87758765 -56523724 + (TG)n Simple_repeat Simple_repeat 2 38 0 510 289 12 44 chr12 87758766 87759015 -56523474 - MER46C DNA MER2_type -96 242 2 286 383 120 23 chr12 87760096 87760313 -56522176 + L2 LINE L2 2942 3179 -93 189 191 73 29 chr12 87760492 87760560 -56521929 + MIR SINE MIR 118 188 -74 22 56 0 0 chr12 87760571 87760607 -56521882 + AT_rich Low_complexity Low_complexity 1 36 0 289 286 64 74 chr12 87761627 87761830 -56520659 - MLT1H LTR MaLR -127 422 222 301 364 9 0 chr12 87762184 87762294 -56520195 + MIR SINE MIR 30 140 -68 495 290 199 0 chr12 87762537 87762723 -56519766 + MIR SINE MIR 30 252 -10 22 35 0 0 chr12 87763659 87763688 -56518801 + AT_rich Low_complexity Low_complexity 1 29 0 26 74 0 0 chr12 87764305 87764359 -56518130 + AT_rich Low_complexity Low_complexity 1 54 0 1176 185 5 5 chr12 87764359 87764570 -56517919 - MER2 DNA MER2_type -134 211 1 318 272 22 0 chr12 87764570 87764661 -56517828 - MER94 DNA DNA -41 93 1 21 0 0 0 chr12 87765174 87765195 -56517294 + AT_rich Low_complexity Low_complexity 1 21 0 1904 133 38 3 chr12 87765317 87765633 -56516856 - L1PB4 LINE L1 -47 6109 5783 312 253 33 11 chr12 87765650 87765741 -56516748 - L1MC4 LINE L1 -1340 6702 6610 215 31 31 0 chr12 87765756 87765788 -56516701 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 3235 162 32 11 chr12 87765788 87766817 -56515672 - L1P5 LINE L1 -373 5783 4728 1760 197 26 51 chr12 87766815 87767126 -56515363 + L1 LINE L1 4020 4316 -1830 * 2168 95 20 0 chr12 87767126 87767430 -56515059 - AluY SINE Alu -1 310 1 1760 197 26 51 chr12 87767430 87767611 -56514878 + L1 LINE L1 4316 4500 -1646 315 83 56 28 chr12 87767802 87767874 -56514615 + T-rich Low_complexity Low_complexity 3 76 0 1217 134 0 45 chr12 87767886 87768110 -56514379 - L1PA11 LINE L1 0 6174 5961 31 58 0 0 chr12 87768605 87768657 -56513832 + AT_rich Low_complexity Low_complexity 1 52 0 29 47 0 0 chr12 87769226 87769269 -56513220 + AT_rich Low_complexity Low_complexity 1 43 0 358 280 160 45 chr12 87769384 87769584 -56512905 + MIR SINE MIR 29 251 -11 610 280 107 4 chr12 87769811 87770036 -56512453 + MIR SINE MIR 2 249 -13 192 125 0 0 chr12 87770249 87770281 -56512208 + (A)n Simple_repeat Simple_repeat 1 32 0 833 323 97 58 chr12 87770571 87771022 -56511467 + L2 LINE L2 1657 2156 -1158 1568 233 19 19 chr12 87771022 87771395 -56511094 + MLT1A2 LTR MaLR 1 373 -1 833 323 97 58 chr12 87771395 87771771 -56510718 + L2 LINE L2 2156 2516 -798 387 318 106 50 chr12 87772068 87772576 -56509913 + L2 LINE L2 2768 3312 -1 232 313 41 54 chr12 87772717 87772864 -56509625 - L2 LINE L2 -6 3307 3163 28 0 0 0 chr12 87773184 87773212 -56509277 + AT_rich Low_complexity Low_complexity 1 28 0 2387 104 0 0 chr12 87773226 87773534 -56508955 + AluSq SINE Alu 1 308 -5 2210 85 0 25 chr12 87773591 87773908 -56508581 + AluY SINE Alu 1 309 -2 379 216 0 0 chr12 87774295 87774369 -56508120 + MER3 DNA MER1_type 37 110 -99 529 209 39 20 chr12 87774375 87774528 -56507961 + MER3 DNA MER1_type 2430 2585 0 627 69 0 69 chr12 87775027 87775128 -56507361 - L1P LINE L1 -5369 777 684 7808 17 0 0 chr12 87775128 87776606 -56505883 + L1PA3 LINE L1 4668 6152 -3 26 0 0 0 chr12 87777451 87777477 -56505012 + AT_rich Low_complexity Low_complexity 1 26 0 448 332 123 28 chr12 87777504 87777862 -56504627 + L2 LINE L2 2829 3220 -93 236 154 19 0 chr12 87777915 87777967 -56504522 + (CA)n Simple_repeat Simple_repeat 2 54 0 394 333 49 18 chr12 87778036 87778363 -56504126 - L1ME4a LINE L1 -237 5884 5548 24 32 0 0 chr12 87778432 87778463 -56504026 + AT_rich Low_complexity Low_complexity 1 31 0 213 39 0 0 chr12 87778729 87778755 -56503734 + (CA)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr12 87778789 87778821 -56503668 + AT_rich Low_complexity Low_complexity 1 32 0 2164 134 11 6 chr12 87778949 87779307 -56503182 - MER46B DNA MER2_type -1 235 1 1554 191 24 7 chr12 87779373 87779671 -56502818 + AluJo SINE Alu 1 303 -9 231 36 0 0 chr12 87779881 87779909 -56502580 + (TCTA)n Simple_repeat Simple_repeat 4 31 0 24 32 0 0 chr12 87780480 87780511 -56501978 + AT_rich Low_complexity Low_complexity 1 31 0 677 293 6 0 chr12 87781615 87781789 -56500700 - MIR SINE MIR -48 214 40 466 314 290 14 chr12 87782210 87782576 -56499913 - L2 LINE L2 -38 3275 2809 662 339 83 26 chr12 87782664 87783086 -56499403 - L2 LINE L2 -777 2537 2092 25 31 0 0 chr12 87784242 87784274 -56498215 + AT_rich Low_complexity Low_complexity 1 32 0 29 78 0 0 chr12 87784390 87784454 -56498035 + AT_rich Low_complexity Low_complexity 1 64 0 261 57 0 0 chr12 87784976 87785011 -56497478 + (CA)n Simple_repeat Simple_repeat 2 36 0 1458 212 75 0 chr12 87785492 87785799 -56496690 - MER58B DNA MER1_type -2 339 10 469 223 54 9 chr12 87786056 87786168 -56496321 - L2 LINE L2 -6 3307 3191 839 260 51 28 chr12 87786173 87786427 -56496062 - LTR16A1 LTR ERVL 0 457 198 395 323 118 43 chr12 87786519 87786937 -56495552 - L2 LINE L2 -104 3209 2763 249 270 0 16 chr12 87789257 87789320 -56493169 + LTR67 LTR ERVL 494 555 -2 321 140 0 0 chr12 87789864 87789921 -56492568 + (CA)n Simple_repeat Simple_repeat 2 58 0 269 318 171 23 chr12 87790209 87790385 -56492104 + MIR SINE MIR 61 262 0 21 36 0 0 chr12 87791150 87791178 -56491311 + AT_rich Low_complexity Low_complexity 1 28 0 4929 123 13 13 chr12 87792755 87793538 -56488951 - L1PB4 LINE L1 -1 6155 5373 1381 310 66 23 chr12 87794335 87794954 -56487535 + L2 LINE L2 1233 1878 -1436 615 305 51 41 chr12 87795261 87795556 -56486933 + MLT1I LTR MaLR 112 409 0 439 207 243 0 chr12 87795988 87796099 -56486390 + MER5A DNA MER1_type 45 182 -7 202 336 49 63 chr12 87796105 87796248 -56486241 - MER5A DNA MER1_type -42 147 7 182 276 0 69 chr12 87796274 87796332 -56486157 + MIR SINE MIR 52 105 -157 250 241 121 9 chr12 87796930 87797046 -56485443 - HAL1b LINE L1 -471 877 749 283 208 77 100 chr12 87798030 87798160 -56484329 + L2 LINE L2 3180 3306 -7 227 325 91 0 chr12 87798416 87798493 -56483996 - MER5A DNA MER1_type -50 139 56 1506 225 87 19 chr12 87798515 87798884 -56483605 + MSTD LTR MaLR 1 394 -2 233 29 29 0 chr12 87799094 87799128 -56483361 + (CA)n Simple_repeat Simple_repeat 2 36 0 29 0 0 0 chr12 87800242 87800271 -56482218 + AT_rich Low_complexity Low_complexity 1 29 0 892 201 29 29 chr12 87800271 87800553 -56481936 - MER93b LTR ERV1 -24 378 12 2854 132 5 5 chr12 87800624 87801295 -56481194 - L1PA15 LINE L1 -27 6129 5229 * 4327 167 14 5 chr12 87801294 87802072 -56480417 + L1MA7 LINE L1 5482 6266 -25 40 21 0 0 chr12 87802072 87802119 -56480370 + AT_rich Low_complexity Low_complexity 1 47 0 207 163 116 12 chr12 87802400 87802486 -56480003 + (TTAAA)n Simple_repeat Simple_repeat 4 98 0 245 209 16 39 chr12 87803644 87803773 -56478716 + (CCCA)n Simple_repeat Simple_repeat 1 126 0 11464 104 2 1 chr12 87803957 87805538 -56476951 + HERVL-A2 LTR ERVL 4072 5654 0 533 79 0 0 chr12 87805538 87805614 -56476875 + MLT2A2 LTR ERVL 1 76 -377 510 17 0 0 chr12 87806256 87806315 -56476174 + (TA)n Simple_repeat Simple_repeat 1 59 0 327 78 0 0 chr12 87806389 87806440 -56476049 + (TA)n Simple_repeat Simple_repeat 1 51 0 21 36 0 0 chr12 87806870 87806898 -56475591 + AT_rich Low_complexity Low_complexity 1 28 0 507 256 36 0 chr12 87807301 87807438 -56475051 - MLT1J2 LTR MaLR -308 142 1 662 244 117 99 chr12 87809034 87809599 -56472890 - MLT1G LTR MaLR -10 585 1 1666 171 0 28 chr12 87810633 87810919 -56471570 + AluJo SINE Alu 3 280 -32 189 0 0 0 chr12 87810919 87810940 -56471549 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 440 308 174 31 chr12 87811836 87812326 -56470163 - L2 LINE L2 -892 2422 1863 447 291 8 31 chr12 87812338 87812465 -56470024 - L2 LINE L2 -1 3312 3189 21 57 0 0 chr12 87812537 87812572 -56469917 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr12 87813062 87813084 -56469405 + AT_rich Low_complexity Low_complexity 1 22 0 614 281 53 16 chr12 87814279 87814508 -56467981 + MIR SINE MIR 1 223 -39 210 289 40 26 chr12 87816621 87816697 -56465792 + L2 LINE L2 3190 3266 -6 200 332 105 0 chr12 87818349 87818454 -56464035 + MIR SINE MIR 40 153 -61 234 262 0 0 chr12 87820965 87821007 -56461482 + C-rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr12 87821926 87821951 -56460538 + AT_rich Low_complexity Low_complexity 1 25 0 4586 160 30 18 chr12 87824722 87825761 -56456728 + L1PA16 LINE L1 5119 6166 0 304 113 7 146 chr12 87825991 87826108 -56456381 - LOR1-int LTR ERV1 -2181 4318 3661 23 0 0 0 chr12 87826546 87826569 -56455920 + AT_rich Low_complexity Low_complexity 1 23 0 234 200 64 128 chr12 87827516 87827641 -56454848 - LTR33 LTR ERVL -390 131 15 21 0 0 0 chr12 87827686 87827707 -56454782 + AT_rich Low_complexity Low_complexity 1 21 0 1044 238 139 54 chr12 87827757 87828261 -56454228 - MER101B LTR ERV1 0 570 24 2210 103 3 10 chr12 87828409 87828720 -56453769 + AluSx SINE Alu 3 311 -1 304 279 126 42 chr12 87828953 87829143 -56453346 - L1MC4a LINE L1 -1826 5982 5777 342 137 0 0 chr12 87829272 87829323 -56453166 - MER101 LTR ERV1 -176 298 248 774 290 37 26 chr12 87829803 87830072 -56452417 - L1MEc LINE L1 -6090 306 35 35 24 0 0 chr12 87830192 87830234 -56452255 + AT_rich Low_complexity Low_complexity 1 42 0 820 167 109 0 chr12 87832022 87832178 -56450311 - AluJb SINE Alu -7 305 133 416 331 88 19 chr12 87833028 87833461 -56449028 + L2 LINE L2 1605 2084 -1230 2163 96 34 0 chr12 87834551 87834844 -56447645 - AluSp SINE Alu -10 303 1 458 238 171 6 chr12 87835868 87836032 -56446457 - MIR SINE MIR -44 218 28 2103 89 3 92 chr12 87836711 87837048 -56445441 - AluSg SINE Alu 0 310 4 184 59 59 0 chr12 87838895 87838929 -56443560 + A-rich Low_complexity Low_complexity 2 37 0 29 60 0 0 chr12 87839017 87839067 -56443422 + AT_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr12 87839127 87839156 -56443333 + AT_rich Low_complexity Low_complexity 1 29 0 988 269 88 62 chr12 87839160 87839691 -56442798 + L1ME3A LINE L1 5292 5830 -340 2339 201 65 44 chr12 87839694 87840306 -56442183 + LTR27 LTR ERV1 12 636 0 672 312 39 33 chr12 87840311 87840648 -56441841 + L1ME3A LINE L1 5832 6170 0 235 203 95 14 chr12 87842053 87842127 -56440362 + MLT1L LTR MaLR 18 97 -518 672 207 172 0 chr12 87842460 87842634 -56439855 + MER3 DNA MER1_type 5 208 -1 186 43 0 0 chr12 87843577 87843600 -56438889 + (CAA)n Simple_repeat Simple_repeat 2 24 0 21 82 0 0 chr12 87843852 87843901 -56438588 + AT_rich Low_complexity Low_complexity 1 49 0 379 195 24 0 chr12 87844249 87844331 -56438158 - MIR SINE MIR 0 262 179 25 65 0 0 chr12 87844411 87844457 -56438032 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr12 87846850 87846873 -56435616 + AT_rich Low_complexity Low_complexity 1 23 0 360 293 62 49 chr12 87847042 87847267 -56435222 + L1ME LINE L1 5562 5789 -332 338 324 0 0 chr12 87848117 87848219 -56434270 - MIR SINE MIR -102 160 59 210 307 0 27 chr12 87848259 87848334 -56434155 - MIR SINE MIR -18 244 172 13754 181 23 44 chr12 87848358 87851144 -56431345 - Tigger4(Zombi) DNA MER2_type -2 2729 1 21 0 0 0 chr12 87851544 87851565 -56430924 + AT_rich Low_complexity Low_complexity 1 21 0 1429 232 98 21 chr12 87851570 87852039 -56430450 - MLT1D LTR MaLR 0 505 1 2499 176 24 33 chr12 87852288 87852840 -56429649 + L1MB8 LINE L1 5513 6059 -119 603 293 25 20 chr12 87853695 87853893 -56428596 + MLT1J LTR MaLR 236 434 -77 328 109 16 16 chr12 87855445 87855509 -56426980 + (TA)n Simple_repeat Simple_repeat 1 64 0 786 249 54 37 chr12 87855521 87855762 -56426727 - MER69 DNA AcHobo -656 570 326 2257 274 38 19 chr12 87855762 87856444 -56426045 + L1PA12 LINE L1 155 849 -6732 264 250 50 43 chr12 87856958 87857098 -56425391 - MER65A LTR ERV1 -304 141 1 21855 188 20 27 chr12 87858478 87858864 -56423625 - L1PA11 LINE L1 -344 7268 6881 1954 118 0 75 chr12 87858864 87859186 -56423303 - AluSq SINE Alu -15 298 1 21855 188 20 27 chr12 87859186 87860500 -56421989 - L1PA11 LINE L1 -731 6881 5559 1695 101 9 0 chr12 87860500 87860728 -56421761 - AluSc SINE Alu -9 300 71 21855 188 20 27 chr12 87860728 87863033 -56419456 - L1PA11 LINE L1 -2053 5559 3239 2748 26 0 0 chr12 87863033 87863339 -56419150 - AluYa5 SINE Alu -5 306 1 21855 188 20 27 chr12 87863339 87865173 -56417316 - L1PA11 LINE L1 -4373 3239 665 301 322 124 21 chr12 87867175 87867408 -56415081 - L3 LINE CR1 -116 1461 1205 624 244 87 12 chr12 87867848 87868020 -56414469 - MER5A DNA MER1_type -4 185 1 195 42 0 0 chr12 87868065 87868089 -56414400 + (A)n Simple_repeat Simple_repeat 1 24 0 2782 92 28 5 chr12 87868367 87868758 -56413731 + MLT2A1 LTR ERVL 1 400 -44 241 104 0 0 chr12 87868758 87868806 -56413683 + LTR66 LTR ERVL 394 441 -169 208 206 0 0 chr12 87868818 87868852 -56413637 + (TG)n Simple_repeat Simple_repeat 2 35 0 235 157 59 0 chr12 87868902 87868953 -56413536 - LTR66 LTR ERVL -171 439 386 1121 82 0 0 chr12 87868953 87869100 -56413389 - HERVL-A2 LTR ERVL -5507 147 1 340 77 39 0 chr12 87869100 87869152 -56413337 - MLT2A2 LTR ERVL 0 453 400 13504 84 10 1 chr12 87869179 87872680 -56409809 + HERVL LTR ERVL 494 4095 -1559 23 68 0 0 chr12 87873456 87873500 -56408989 + AT_rich Low_complexity Low_complexity 1 44 0 2333 224 48 16 chr12 87873894 87874500 -56407989 + MLT1E2 LTR MaLR 1 625 -1 1204 176 20 28 chr12 87874630 87874885 -56407604 - THE1C LTR MaLR 0 375 123 749 291 21 12 chr12 87875863 87876104 -56406385 + MIR SINE MIR 2 244 -18 25 0 0 0 chr12 87876725 87876750 -56405739 + AT_rich Low_complexity Low_complexity 1 25 0 307 198 74 0 chr12 87876905 87876986 -56405503 + L1ME4a LINE L1 5839 5925 -196 22 70 0 0 chr12 87877264 87877307 -56405182 + AT_rich Low_complexity Low_complexity 1 43 0 1053 73 20 0 chr12 87877559 87877710 -56404779 + L1MB1 LINE L1 6015 6168 0 187 351 96 0 chr12 87877733 87877827 -56404662 + MIR SINE MIR 47 149 -113 3615 229 90 8 chr12 87878889 87880661 -56401828 - L1MB8 LINE L1 0 6178 4249 225 343 19 9 chr12 87880697 87880802 -56401687 - L2 LINE L2 -573 2741 2636 1088 194 9 9 chr12 87880960 87881176 -56401313 - AluJo SINE Alu -16 296 81 474 295 67 55 chr12 87881921 87882685 -56399804 + L1MEd LINE L1 932 1734 -4576 22 0 0 0 chr12 87882695 87882717 -56399772 + AT_rich Low_complexity Low_complexity 1 22 0 382 278 73 49 chr12 87882930 87883355 -56399134 + L1MEd LINE L1 2093 2527 -3602 22 35 0 0 chr12 87883416 87883445 -56399044 + AT_rich Low_complexity Low_complexity 1 29 0 936 306 63 57 chr12 87885638 87885735 -56396754 - L2 LINE L2 -1 3312 3217 1673 83 13 4 chr12 87885735 87885963 -56396526 - MER30 DNA MER1_type 0 230 1 936 306 63 57 chr12 87885963 87886474 -56396015 - L2 LINE L2 -96 3217 2700 2339 289 104 58 chr12 87886649 87887607 -56394882 - L2 LINE L2 -527 2787 1758 1569 200 13 0 chr12 87887607 87887912 -56394577 + AluSc SINE Alu 1 309 0 2339 289 104 58 chr12 87887912 87888194 -56394295 - L2 LINE L2 -1556 1758 1490 215 224 61 0 chr12 87888351 87888400 -56394089 + L2 LINE L2 3258 3309 -4 2279 104 3 10 chr12 87888887 87889196 -56393293 - AluSq SINE Alu -6 307 1 2026 144 3 3 chr12 87940693 87940999 -56341490 + AluSx SINE Alu 1 306 -6 737 272 48 22 chr12 87941111 87941339 -56341150 + MIR SINE MIR 29 262 0 21 0 0 0 chr12 87941536 87941557 -56340932 + AT_rich Low_complexity Low_complexity 1 21 0 308 43 0 21 chr12 87941612 87941659 -56340830 + (CA)n Simple_repeat Simple_repeat 2 47 0 5592 124 6 20 chr12 87942837 87943747 -56338742 - L1MA5A LINE L1 0 6297 5401 714 281 68 42 chr12 87944323 87944986 -56337503 - L1MEc LINE L1 -4712 1684 1005 2410 223 47 19 chr12 87946831 87947361 -56335128 + REP3 LTR ERV 14 558 -4 210 75 0 57 chr12 87949454 87949507 -56332982 + (TTTTTA)n Simple_repeat Simple_repeat 4 53 0 36 53 0 0 chr12 87949836 87949893 -56332596 + AT_rich Low_complexity Low_complexity 1 57 0 2322 146 28 3 chr12 87950493 87950884 -56331605 + MER57A LTR ERV1 1 401 -2 2866 174 24 47 chr12 87951532 87952214 -56330275 - L1MA10 LINE L1 -16 6318 5653 2924 207 47 4 chr12 87952223 87952982 -56329507 + L1MEd LINE L1 2789 3580 -2549 260 133 17 0 chr12 87953140 87953200 -56329289 + (TA)n Simple_repeat Simple_repeat 1 61 0 209 261 31 46 chr12 87953719 87953784 -56328705 + L2 LINE L2 3201 3264 -8 390 314 46 20 chr12 87953855 87954008 -56328481 + MIR SINE MIR 32 188 -74 345 348 29 43 chr12 87955431 87955569 -56326920 + L2 LINE L2 3159 3294 -19 307 319 22 22 chr12 87955860 87955995 -56326494 + MIR3 SINE MIR 68 202 -6 3363 110 15 14 chr12 87956045 87956563 -56325926 + L1PB2 LINE L1 5630 6148 -3 195 42 0 0 chr12 87956670 87956694 -56325795 + (TTTTTA)n Simple_repeat Simple_repeat 4 27 0 22 80 0 0 chr12 87956706 87956756 -56325733 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr12 87957295 87957323 -56325166 + AT_rich Low_complexity Low_complexity 1 28 0 1660 204 3 0 chr12 87957555 87957854 -56324635 - AluJb SINE Alu -11 301 2 7565 51 0 0 chr12 87957881 87958845 -56323644 - L1PA5 LINE L1 -2661 3485 2522 15436 38 2 0 chr12 87958845 87961511 -56320978 + L1PA5 LINE L1 3471 6145 -9 40 0 0 0 chr12 87961511 87961551 -56320938 + AT_rich Low_complexity Low_complexity 1 40 0 233 282 14 14 chr12 87961699 87961770 -56320719 + MLT1L LTR MaLR 1 71 -544 370 222 0 0 chr12 87961883 87961955 -56320534 + MLT1L LTR MaLR 218 289 -326 226 213 0 0 chr12 87962147 87962194 -56320295 + MLT1L LTR MaLR 561 607 -8 23 0 0 0 chr12 87962659 87962682 -56319807 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr12 87963134 87963170 -56319319 + AT_rich Low_complexity Low_complexity 1 36 0 1373 224 27 38 chr12 87963364 87963730 -56318759 - MLT1A1 LTR MaLR 0 365 4 327 49 0 0 chr12 87963999 87964040 -56318449 + (CA)n Simple_repeat Simple_repeat 2 42 0 343 253 0 0 chr12 87964290 87964365 -56318124 + MIR SINE MIR 172 246 -16 798 223 89 41 chr12 87964621 87964987 -56317502 - MLT1F1 LTR MaLR -4 563 122 289 224 82 35 chr12 87965051 87965136 -56317353 - MLT1F1 LTR MaLR -418 124 36 3065 70 15 1 chr12 87965703 87966389 -56316100 + L1P3 LINE L1 4987 5680 -474 * 4351 178 28 11 chr12 87966388 87967275 -56315214 - L1 LINE L1 -1677 4469 3568 23 54 0 0 chr12 87967980 87968017 -56314472 + AT_rich Low_complexity Low_complexity 1 37 0 7617 28 0 0 chr12 87968045 87969142 -56313347 - L1PA3 LINE L1 -3 6152 5058 1897 169 7 0 chr12 87969715 87970023 -56312466 - AluJb SINE Alu -2 310 1 366 349 52 26 chr12 87970455 87970684 -56311805 + MIR SINE MIR 20 254 -8 234 342 27 9 chr12 87970823 87970934 -56311555 + L2 LINE L2 1465 1577 -1737 411 200 0 0 chr12 87970960 87971030 -56311459 - FLAM_A SINE Alu -50 83 14 220 261 84 84 chr12 87971058 87971273 -56311216 + L2 LINE L2 1589 1803 -1511 414 290 35 40 chr12 87971365 87971650 -56310839 - L3 LINE CR1 -156 1421 1096 28 86 0 0 chr12 87971677 87971747 -56310742 + AT_rich Low_complexity Low_complexity 1 70 0 216 209 66 11 chr12 87972506 87972597 -56309892 + (TA)n Simple_repeat Simple_repeat 1 96 0 328 298 89 12 chr12 87972839 87973087 -56309402 - L1MEc LINE L1 -4825 1485 1219 355 281 24 0 chr12 87973165 87973247 -56309242 + MER63 DNA MER1_type 978 1061 0 1069 273 109 40 chr12 87973481 87973829 -56308660 - L1MEc LINE L1 -4879 1240 917 1748 179 7 3 chr12 87973829 87974126 -56308363 - AluJb SINE Alu -14 298 1 1069 273 109 40 chr12 87974126 87974397 -56308092 - L1MEc LINE L1 -5202 917 571 2262 84 13 3 chr12 87974397 87974696 -56307793 - AluY SINE Alu -9 302 1 1069 273 109 40 chr12 87974696 87974727 -56307762 - L1MEc LINE L1 -5548 571 544 365 308 158 59 chr12 87974955 87975342 -56307147 + MLT1K LTR MaLR 131 555 -33 308 330 0 17 chr12 87975614 87975732 -56306757 - L1MC4 LINE L1 -1339 6703 6588 944 236 95 52 chr12 87975746 87976073 -56306416 - MLT2C1 LTR ERVL -56 341 1 805 280 70 8 chr12 87976080 87976323 -56306166 + LTR16A LTR ERVL 108 365 -85 21 0 0 0 chr12 87976590 87976611 -56305878 + AT_rich Low_complexity Low_complexity 1 21 0 417 202 90 0 chr12 87977202 87977291 -56305198 - MER63 DNA MER1_type -334 728 6 250 125 89 18 chr12 87977306 87977362 -56305127 + L2 LINE L2 1578 1637 -1677 265 246 29 0 chr12 87977751 87977820 -56304669 + L2 LINE L2 2725 2795 -519 * 323 323 10 10 chr12 87977818 87977914 -56304575 + L2 LINE L2 3186 3281 -32 331 323 0 8 chr12 87978317 87978444 -56304045 - MIR SINE MIR -8 254 129 1647 171 0 4 chr12 87978470 87978744 -56303745 + AluJb SINE Alu 27 299 -13 270 0 0 0 chr12 87978747 87978777 -56303712 + (CATA)n Simple_repeat Simple_repeat 2 31 0 826 200 0 57 chr12 87978793 87978968 -56303521 - MLT2C1 LTR ERVL 0 397 233 4707 178 21 66 chr12 87978995 87979342 -56303147 - L1MA9 LINE L1 -1 6311 5950 1466 126 4 9 chr12 87979342 87979572 -56302917 - AluSc SINE Alu -7 302 74 4707 178 21 66 chr12 87979572 87980900 -56301589 - L1MA9 LINE L1 -362 5950 4699 2742 210 150 15 chr12 87980926 87982184 -56300305 - L1MCa LINE L1 -4256 2332 744 2347 52 0 0 chr12 87982196 87982485 -56300004 - L1PA5 LINE L1 0 6154 5866 1540 17 0 0 chr12 87982485 87982661 -56299828 + L1PA5 LINE L1 5701 5876 -278 2266 207 129 21 chr12 87982662 87983377 -56299112 - L1MCa LINE L1 -5292 852 1 447 201 0 0 chr12 87983531 87983665 -56298824 + (TA)n Simple_repeat Simple_repeat 1 134 0 335 310 0 17 chr12 87983665 87983781 -56298708 + L1MC4 LINE L1 6589 6702 -1340 312 153 14 83 chr12 87983717 87983789 -56298700 - L1MCa LINE L1 -4362 2064 1998 * 288 226 0 0 chr12 87983796 87983889 -56298600 + (TA)n Simple_repeat Simple_repeat 1 93 0 232 236 14 0 chr12 87983896 87983968 -56298521 - L1MCa LINE L1 -4359 2067 1995 603 229 9 0 chr12 87983980 87984752 -56297737 + (TA)n Simple_repeat Simple_repeat 1 779 0 371 231 0 6 chr12 87984797 87984953 -56297536 + (TA)n Simple_repeat Simple_repeat 2 156 0 314 225 14 0 chr12 87984955 87985026 -56297463 + L1MCa LINE L1 1996 2067 -4359 216 135 0 0 chr12 87985041 87985078 -56297411 + (TA)n Simple_repeat Simple_repeat 2 38 0 1202 193 136 31 chr12 87985173 87985800 -56296689 + LTR48 LTR ERV1 1 697 -10 357 313 154 15 chr12 87988236 87988437 -56294052 - MIR SINE MIR -19 243 15 210 225 0 0 chr12 87988584 87988624 -56293865 + (CA)n Simple_repeat Simple_repeat 1 40 0 3130 157 7 18 chr12 87988968 87989439 -56293050 - L1MC2 LINE L1 -355 5989 5523 2235 95 7 0 chr12 87989439 87989735 -56292754 + AluSp SINE Alu 1 298 -15 3130 157 7 18 chr12 87989735 87989816 -56292673 - L1MC2 LINE L1 -821 5523 5443 2779 79 99 7 chr12 87990194 87990235 -56292254 - MLT2A1 LTR ERVL -2 442 406 261 0 0 0 chr12 87990235 87990264 -56292225 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 375 23 0 0 chr12 87990263 87990307 -56292182 + (TG)n Simple_repeat Simple_repeat 1 44 0 2779 79 99 7 chr12 87990264 87990670 -56291819 - MLT2A1 LTR ERVL -38 406 1 28787 82 12 3 chr12 87990671 87994253 -56288236 - HERVL-A1-A1 LTR ERVL -1 5653 2104 2031 143 48 25 chr12 87994253 87994609 -56287880 - THE1B LTR MaLR 0 364 1 11267 115 1 0 chr12 87994609 87996187 -56286302 - THE1B-int LTR MaLR 0 1580 1 2001 137 48 28 chr12 87996187 87996544 -56285945 - THE1B LTR MaLR 0 364 1 28787 82 12 3 chr12 87996544 87998494 -56283995 - HERVL-A1-A1 LTR ERVL -3549 2105 1 3209 106 2 5 chr12 87998494 87998939 -56283550 - MLT2A1 LTR ERVL 0 444 1 1063 348 14 6 chr12 87999083 87999431 -56283058 - MLT1I LTR MaLR -46 363 13 451 145 0 0 chr12 87999676 87999745 -56282744 + AluJ/FLAM SINE Alu 3 71 -241 24 0 0 0 chr12 87999759 87999783 -56282706 + AT_rich Low_complexity Low_complexity 1 24 0 689 217 24 6 chr12 88000551 88000717 -56281772 + L1MC1 LINE L1 6165 6333 0 183 236 11 146 chr12 88000931 88001020 -56281469 - L2 LINE L2 0 3313 3237 207 284 34 34 chr12 88001610 88001698 -56280791 - L2 LINE L2 -1862 1452 1365 2194 110 0 0 chr12 88001961 88002262 -56280227 + AluY SINE Alu 1 301 -10 296 367 87 4 chr12 88002482 88002711 -56279778 + L2 LINE L2 2036 2283 -1031 293 235 135 71 chr12 88002717 88002841 -56279648 + MLT1K LTR MaLR 392 507 -81 2600 33 0 7 chr12 88002841 88003147 -56279342 + AluY SINE Alu 1 304 -7 1762 53 126 0 chr12 88003147 88003393 -56279096 - L1PA4 LINE L1 0 6155 5879 293 235 135 71 chr12 88003393 88003437 -56279052 + MLT1K LTR MaLR 506 572 -16 1902 147 0 3 chr12 88003933 88004244 -56278245 - AluSx SINE Alu 0 310 1 25 0 0 0 chr12 88004244 88004269 -56278220 + AT_rich Low_complexity Low_complexity 1 25 0 691 204 13 33 chr12 88004269 88004421 -56278068 - FRAM SINE Alu -21 155 7 33 43 0 0 chr12 88004553 88004600 -56277889 + AT_rich Low_complexity Low_complexity 1 47 0 22 80 0 0 chr12 88005095 88005145 -56277344 + AT_rich Low_complexity Low_complexity 1 50 0 2911 184 18 25 chr12 88005251 88005860 -56276629 - MER6A DNA MER2_type 0 605 1 271 347 41 48 chr12 88005938 88006085 -56276404 + MIR3 SINE MIR 8 153 -55 25 0 0 0 chr12 88006400 88006425 -56276064 + AT_rich Low_complexity Low_complexity 1 25 0 2107 118 0 3 chr12 88007128 88007424 -56275065 - AluSx SINE Alu -17 295 1 275 338 66 7 chr12 88007794 88007945 -56274544 - L2 LINE L2 -457 2857 2698 393 243 75 0 chr12 88007969 88008076 -56274413 - L2 LINE L2 0 3313 3199 212 354 49 62 chr12 88008116 88008260 -56274229 - L2 LINE L2 -671 2643 2502 388 294 92 0 chr12 88008461 88008580 -56273909 + MLT1H LTR MaLR 71 200 -349 521 306 38 0 chr12 88009030 88009190 -56273299 - MIR3 SINE MIR -3 205 40 341 287 21 0 chr12 88010707 88010801 -56271688 - MER5B DNA MER1_type -63 115 20 180 0 0 0 chr12 88011085 88011105 -56271384 + (A)n Simple_repeat Simple_repeat 1 20 0 26 64 0 0 chr12 88011330 88011377 -56271112 + AT_rich Low_complexity Low_complexity 1 47 0 2053 151 0 0 chr12 88011563 88011862 -56270627 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr12 88011870 88011900 -56270589 + AT_rich Low_complexity Low_complexity 1 30 0 268 378 47 14 chr12 88012017 88012165 -56270324 + MER5B DNA MER1_type 1 153 -25 2435 150 112 28 chr12 88012189 88012631 -56269858 - L1MC2 LINE L1 -33 6311 5817 2661 43 0 0 chr12 88012631 88012936 -56269553 - AluY SINE Alu -6 305 1 2435 150 112 28 chr12 88012936 88013021 -56269468 - L1MC2 LINE L1 -527 5817 5740 5634 224 91 23 chr12 88013730 88016507 -56265982 - L1MB8 LINE L1 0 6178 3208 640 294 102 23 chr12 88016515 88017073 -56265416 - L1M4b LINE L1 -3951 3187 2586 2371 257 45 17 chr12 88017332 88018507 -56263982 - L1M4b LINE L1 -4536 2423 1207 286 253 36 0 chr12 88018993 88019076 -56263413 - L1M4b LINE L1 -5900 959 874 3683 203 22 5 chr12 88019325 88020324 -56262165 + L1P4 LINE L1 4470 5486 -680 1068 165 35 20 chr12 88020481 88020681 -56261808 + MLT1E3 LTR MaLR 1 203 -421 2363 171 41 58 chr12 88020691 88020721 -56261768 - L1MB1 LINE L1 -333 5835 5806 2108 102 10 13 chr12 88020721 88021026 -56261463 + AluSx SINE Alu 1 304 -8 2363 171 41 58 chr12 88021026 88021918 -56260571 - L1MB1 LINE L1 -362 5806 4911 1697 189 3 0 chr12 88021919 88022241 -56260248 + L1MB1 LINE L1 5843 6165 -3 2376 231 20 58 chr12 88022280 88023028 -56259461 + L1MA9 LINE L1 5555 6274 -38 936 242 12 67 chr12 88023058 88023371 -56259118 + MLT1E1 LTR MaLR 332 654 0 232 184 20 0 chr12 88023904 88023953 -56258536 + (TG)n Simple_repeat Simple_repeat 2 51 0 4011 99 16 2 chr12 88024187 88024544 -56257945 - L1PB1 LINE L1 -1 6150 5780 447 68 0 0 chr12 88024544 88024603 -56257886 + (TG)n Simple_repeat Simple_repeat 2 60 0 4011 99 16 2 chr12 88024603 88024823 -56257666 - L1PB1 LINE L1 -371 5780 5565 2133 201 46 73 chr12 88024823 88025435 -56257054 - LTR9 LTR ERV1 -17 595 1 6918 182 15 22 chr12 88025435 88026918 -56255571 - L1P5 LINE L1 -588 5563 4102 2364 61 0 24 chr12 88026918 88027213 -56255276 + AluY SINE Alu 1 288 -23 6918 182 15 22 chr12 88027213 88027550 -56254939 - L1P5 LINE L1 -2049 4102 3764 * 8345 162 36 25 chr12 88027546 88030583 -56251906 + L1P5 LINE L1 1393 4462 -2400 968 266 102 41 chr12 88031253 88031644 -56250845 - MLT1E2 LTR MaLR -6 620 206 222 37 0 0 chr12 88031675 88031702 -56250787 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2456 81 102 5 chr12 88031702 88032074 -56250415 - LTR7 LTR ERV1 -42 408 1 2355 103 48 13 chr12 88032074 88032453 -56250036 - HERVH LTR ERV1 0 7713 7322 881 98 32 0 chr12 88032451 88032574 -56249915 - HERVH LTR ERV1 -1894 5819 5693 * 1607 169 0 0 chr12 88032574 88032834 -56249655 + HERVH LTR ERV1 4890 5149 -2564 493 143 0 0 chr12 88032835 88032919 -56249570 + HERVH LTR ERV1 5600 5683 -2030 3228 216 43 30 chr12 88032921 88033758 -56248731 - L1MC3 LINE L1 -16 7769 6922 1261 325 55 21 chr12 88034968 88035532 -56246957 + L2 LINE L2 2207 2789 -525 659 203 8 0 chr12 88035616 88035744 -56246745 + MLT1A2 LTR MaLR 241 369 -5 400 320 51 6 chr12 88035743 88035899 -56246590 - MLT1J LTR MaLR -348 163 1 * 2220 174 31 17 chr12 88036128 88036548 -56245941 - MSTB LTR MaLR 0 426 1 4269 171 28 20 chr12 88036908 88037001 -56245488 + L1MA9 LINE L1 4840 4931 -1381 1945 147 32 37 chr12 88037001 88037376 -56245113 + THE1C LTR MaLR 3 375 0 4269 171 28 20 chr12 88037376 88038504 -56243985 + L1MA9 LINE L1 4931 6075 -237 871 192 27 126 chr12 88038502 88038835 -56243654 + L1MC1 LINE L1 4005 4304 -1842 * 1781 193 34 0 chr12 88038860 88039186 -56243303 - MER2 DNA MER2_type -1 344 8 3676 200 50 10 chr12 88039189 88040714 -56241775 + L1MC1 LINE L1 4338 5933 -400 195 42 0 0 chr12 88040714 88040738 -56241751 + (TA)n Simple_repeat Simple_repeat 2 25 0 7217 41 7 1 chr12 88040738 88042194 -56240295 - L1PA5 LINE L1 -15 6139 4680 1966 198 25 2 chr12 88042203 88042598 -56239891 + L1MC1 LINE L1 5925 6328 -5 365 269 44 95 chr12 88042601 88042939 -56239550 + L1ME1 LINE L1 5810 6130 -36 * 462 266 19 13 chr12 88042820 88042978 -56239511 + L1MA10 LINE L1 6169 6327 -7 337 341 47 6 chr12 88043303 88043473 -56239016 - MIR3 SINE MIR -2 206 30 449 261 85 17 chr12 88045251 88045427 -56237062 - MLT1K LTR MaLR 0 588 401 2554 226 27 29 chr12 88045434 88045479 -56237010 - L1MC4a LINE L1 0 7808 7764 2203 153 19 8 chr12 88045479 88045839 -56236650 - THE1B LTR MaLR 0 364 1 2554 226 27 29 chr12 88045839 88046480 -56236009 - L1MC4a LINE L1 -44 7764 7121 3010 101 29 4 chr12 88046480 88046934 -56235555 - MER4C LTR ERV1 0 465 1 2554 226 27 29 chr12 88046934 88046977 -56235512 - L1MC4a LINE L1 -687 7121 7079 410 385 52 12 chr12 88047021 88047270 -56235219 - MLT1K LTR MaLR -240 348 90 180 326 61 0 chr12 88047527 88047576 -56234913 - L3b LINE CR1 -236 1347 1296 189 148 19 56 chr12 88047612 88047666 -56234823 + MIR SINE MIR 211 262 0 21 71 0 0 chr12 88047666 88047708 -56234781 + AT_rich Low_complexity Low_complexity 1 42 0 206 309 73 0 chr12 88047875 88047943 -56234546 - L3b LINE CR1 -308 1275 1203 23 78 0 0 chr12 88048082 88048133 -56234356 + AT_rich Low_complexity Low_complexity 1 51 0 32 57 0 0 chr12 88048740 88048793 -56233696 + AT_rich Low_complexity Low_complexity 1 53 0 1747 148 61 14 chr12 88049867 88050211 -56232278 - MER46B DNA MER2_type -1 235 1 234 241 0 0 chr12 88051488 88051546 -56230943 + (CA)n Simple_repeat Simple_repeat 1 58 0 1349 130 60 0 chr12 88051709 88051925 -56230564 - MER30 DNA MER1_type -1 229 1 423 212 7 82 chr12 88052774 88052920 -56229569 + L1MB5 LINE L1 6037 6171 -3 1599 182 42 70 chr12 88053143 88053544 -56228945 - MLT1B LTR MaLR 0 390 1 507 300 18 0 chr12 88053554 88053724 -56228765 + HERV16 LTR ERVL 4247 4419 -1066 706 147 0 0 chr12 88053731 88053840 -56228649 - THE1B LTR MaLR -19 345 237 6370 121 27 4 chr12 88053840 88054768 -56227721 - THE1B-int LTR MaLR -631 949 1 1923 138 6 38 chr12 88054768 88055087 -56227402 - THE1B LTR MaLR 0 364 56 269 32 0 0 chr12 88055644 88055675 -56226814 - THE1B LTR MaLR -324 31 1 1239 288 90 61 chr12 88055693 88056467 -56226022 + HERV16 LTR ERVL 4533 5329 -435 396 231 100 15 chr12 88057108 88057238 -56225251 + MIR SINE MIR 112 252 -10 626 338 54 38 chr12 88057826 88058407 -56224082 - L2 LINE L2 -1 3312 2726 2099 109 19 29 chr12 88058913 88059226 -56223263 + AluSx SINE Alu 1 310 -2 3473 121 11 21 chr12 88059768 88060328 -56222161 + MER41A LTR ERV1 1 554 0 389 93 0 0 chr12 88060533 88060587 -56221902 - Alu SINE Alu -1 301 248 274 243 28 37 chr12 88061649 88061756 -56220733 + Charlie8 DNA MER1_type 68 173 -2244 239 186 0 0 chr12 88061876 88061919 -56220570 + Charlie8 DNA MER1_type 2366 2408 -9 492 325 88 7 chr12 88061971 88062245 -56220244 + LTR16B LTR ERVL 1 296 -168 232 274 38 47 chr12 88062277 88062383 -56220106 + LTR16B LTR ERVL 360 464 0 473 128 18 28 chr12 88062564 88062673 -56219816 + GA-rich Low_complexity Low_complexity 3 110 0 1328 318 80 26 chr12 88063247 88063858 -56218631 + HERV16 LTR ERVL 635 1278 -3718 2634 322 46 34 chr12 88063880 88065371 -56217118 + HERV16 LTR ERVL 1975 3486 -1901 1146 371 43 17 chr12 88065381 88066142 -56216347 + HERV16 LTR ERVL 4161 4941 -823 654 285 152 28 chr12 88066479 88066802 -56215687 + L2 LINE L2 2951 3313 0 486 320 104 9 chr12 88066921 88067143 -56215346 - MIR SINE MIR -4 258 16 2536 68 0 0 chr12 88067597 88067907 -56214582 - AluY SINE Alu -1 310 1 195 42 0 0 chr12 88068322 88068346 -56214143 + (CA)n Simple_repeat Simple_repeat 1 24 0 2323 103 0 0 chr12 88068530 88068831 -56213658 + AluSg SINE Alu 1 301 -9 378 59 0 0 chr12 88069083 88069134 -56213355 - MADE1 DNA Mariner 0 80 30 1466 185 8 8 chr12 88069648 88069907 -56212582 + AluJb SINE Alu 27 285 -27 195 69 0 0 chr12 88070656 88070685 -56211804 + (TTA)n Simple_repeat Simple_repeat 3 31 0 7104 35 1 0 chr12 88070685 88071525 -56210964 - L1PA5 LINE L1 -18 6136 5296 2213 153 30 22 chr12 88072532 88072938 -56209551 - Tigger3(Golem) DNA MER2_type -2 3027 2619 2271 141 5 44 chr12 88073201 88073536 -56208953 - THE1C LTR MaLR 0 375 56 1788 165 32 49 chr12 88073536 88073906 -56208583 + THE1B LTR MaLR 1 364 0 2271 141 5 44 chr12 88073906 88073960 -56208529 - THE1C LTR MaLR -319 56 1 1141 151 82 129 chr12 88073960 88074325 -56208164 - L1MA10 LINE L1 -9 6325 5978 1798 151 55 30 chr12 88074325 88074689 -56207800 + THE1C LTR MaLR 1 373 -2 9468 130 43 24 chr12 88074694 88076236 -56206253 + THE1C-int LTR MaLR 4 1574 -6 1907 150 55 30 chr12 88076241 88076607 -56205882 + THE1C LTR MaLR 1 375 0 343 145 32 0 chr12 88076608 88076670 -56205819 - L1MA10 LINE L1 -208 5981 5918 247 143 0 0 chr12 88076698 88076740 -56205749 + L1MB1 LINE L1 5918 5959 -230 626 244 140 28 chr12 88076751 88076859 -56205630 - L1MA10 LINE L1 -260 5929 5834 228 67 0 0 chr12 88076859 88076889 -56205600 + (TA)n Simple_repeat Simple_repeat 1 30 0 626 244 140 28 chr12 88076889 88077030 -56205459 - L1MA10 LINE L1 -355 5834 5652 532 136 0 2 chr12 88077037 88077140 -56205349 - L1ME LINE L1 -530 5591 5493 782 311 64 32 chr12 88077248 88077656 -56204833 - HERVL LTR ERVL -2488 3166 2746 21 36 0 0 chr12 88078140 88078168 -56204321 + AT_rich Low_complexity Low_complexity 1 28 0 283 191 26 17 chr12 88078651 88078766 -56203723 + (TA)n Simple_repeat Simple_repeat 2 117 0 21 0 0 0 chr12 88078901 88078922 -56203567 + AT_rich Low_complexity Low_complexity 1 21 0 35 63 0 0 chr12 88078957 88079020 -56203469 + AT_rich Low_complexity Low_complexity 1 63 0 316 354 0 0 chr12 88079801 88079897 -56202592 + L2 LINE L2 3199 3294 -19 6180 180 23 16 chr12 88080352 88081588 -56200901 + L1PB4 LINE L1 3916 5182 -974 243 0 0 0 chr12 88081588 88081615 -56200874 + (TAA)n Simple_repeat Simple_repeat 2 28 0 6180 180 23 16 chr12 88081615 88082595 -56199894 + L1PB4 LINE L1 5182 6153 -3 1431 297 64 122 chr12 88082596 88083062 -56199427 - L2 LINE L2 -1103 2211 1720 2137 70 11 7 chr12 88083062 88083348 -56199141 + AluY SINE Alu 1 287 -24 1431 297 64 122 chr12 88083348 88084580 -56197909 - L2 LINE L2 -1594 1720 611 889 230 224 27 chr12 88084819 88085150 -56197339 + MSTD LTR MaLR 1 396 0 827 179 6 13 chr12 88085267 88085423 -56197066 - FRAM SINE Alu -11 165 11 40 0 0 0 chr12 88085423 88085463 -56197026 + AT_rich Low_complexity Low_complexity 1 40 0 1892 177 19 27 chr12 88085766 88086134 -56196355 + MLT1A1 LTR MaLR 1 365 0 482 309 68 0 chr12 88086175 88086337 -56196152 - MLT1I LTR MaLR -4 405 233 2456 87 0 0 chr12 88087426 88087735 -56194754 - AluSc SINE Alu 0 309 1 386 226 9 0 chr12 88088008 88088114 -56194375 + G-rich Low_complexity Low_complexity 1 107 0 101 47 0 62 chr12 88088120 88088216 -56194273 + GC_rich Low_complexity Low_complexity 1 101 -158 180 0 0 0 chr12 88088216 88088236 -56194253 + (G)n Simple_repeat Simple_repeat 1 20 0 101 47 0 62 chr12 88088236 88088415 -56194074 + GC_rich Low_complexity Low_complexity 101 259 0 203 211 26 13 chr12 88088494 88088570 -56193919 + G-rich Low_complexity Low_complexity 3 79 0 255 122 0 0 chr12 88088608 88088657 -56193832 + (G)n Simple_repeat Simple_repeat 1 49 0 36 0 0 0 chr12 88088688 88088724 -56193765 + GC_rich Low_complexity Low_complexity 1 36 0 315 271 35 24 chr12 88088761 88088931 -56193558 + G-rich Low_complexity Low_complexity 3 174 0 * 352 266 36 7 chr12 88088837 88088976 -56193513 + (CGGGG)n Simple_repeat Simple_repeat 2 144 0 25 51 0 0 chr12 88139116 88139155 -56143334 + AT_rich Low_complexity Low_complexity 1 39 0 24 53 0 0 chr12 88139189 88139227 -56143262 + AT_rich Low_complexity Low_complexity 1 38 0 1342 231 100 13 chr12 88139495 88140023 -56142466 + MER114 LTR ERV 1 574 -74 2214 108 7 3 chr12 88140172 88140478 -56142011 + AluSx SINE Alu 1 307 -5 671 201 67 8 chr12 88140484 88140618 -56141871 + FRAM SINE Alu 10 151 -25 214 277 32 85 chr12 88140684 88140778 -56141711 - L2 LINE L2 -192 3080 2992 298 297 25 25 chr12 88141148 88141266 -56141223 + LTR67 LTR ERVL 393 510 -47 225 284 161 32 chr12 88141369 88141524 -56140965 - L2 LINE L2 -444 2870 2696 4062 136 30 1 chr12 88142301 88143041 -56139448 - L1PA16 LINE L1 -252 5914 5156 564 173 136 0 chr12 88143060 88143170 -56139319 + L1P LINE L1 4512 4636 -1510 4878 215 49 34 chr12 88143174 88144258 -56138231 + L1PA13 LINE L1 53 1152 -5687 879 129 7 14 chr12 88144394 88144534 -56137955 + LTR28-int LTR ERV1 6952 7090 -1 2153 247 107 60 chr12 88144536 88145550 -56136939 + LTR28 LTR ERV1 3 1735 -20 1114 189 4 0 chr12 88145561 88145799 -56136690 - L1 LINE L1 -1748 4398 4160 396 0 0 0 chr12 88146240 88146284 -56136205 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 321 250 0 0 chr12 88146740 88146812 -56135677 + MIR SINE MIR 164 235 -27 592 374 65 34 chr12 88146893 88147305 -56135184 + L3 LINE CR1 235 659 -918 333 292 78 66 chr12 88147331 88147588 -56134901 + MLT1L LTR MaLR 3 262 -353 254 288 161 8 chr12 88147675 88147793 -56134696 + MLT1L LTR MaLR 383 518 -97 525 259 6 59 chr12 88147885 88148055 -56134434 - MIR SINE MIR -44 218 58 189 0 0 0 chr12 88148590 88148611 -56133878 + (CAA)n Simple_repeat Simple_repeat 2 22 0 625 279 9 43 chr12 88148622 88148944 -56133545 + L1M4 LINE L1 2289 2599 -3547 249 159 0 0 chr12 88149007 88149051 -56133438 + (TATG)n Simple_repeat Simple_repeat 1 44 0 7333 234 7 10 chr12 88149194 88151173 -56131316 + L1PA13 LINE L1 1805 3775 -3074 1596 153 7 46 chr12 88152278 88152585 -56129904 + AluSx SINE Alu 4 298 -14 200 382 0 26 chr12 88152646 88152722 -56129767 + L2 LINE L2 3197 3270 -2 470 277 154 23 chr12 88152730 88152990 -56129499 + L1ME4a LINE L1 5822 6115 -6 254 159 48 0 chr12 88153149 88153212 -56129277 - L1MA10 LINE L1 -7 6327 6262 10141 114 4 3 chr12 88153326 88154751 -56127738 + THE1-int LTR MaLR 155 1580 0 412 274 17 22 chr12 88154793 88154972 -56127517 + CT-rich Low_complexity Low_complexity 3 180 0 187 349 0 8 chr12 88154981 88155110 -56127379 + C-rich Low_complexity Low_complexity 2 129 0 255 260 20 27 chr12 88155131 88155277 -56127212 + (CGG)n Simple_repeat Simple_repeat 2 146 0 532 250 85 0 chr12 88156991 88157155 -56125334 - LTR47A LTR ERVL 0 452 275 414 335 82 19 chr12 88157562 88157768 -56124721 + MIR SINE MIR 7 225 -37 6204 48 10 5 chr12 88157778 88158567 -56123922 + L1PA4 LINE L1 5350 6142 -13 266 171 0 0 chr12 88158590 88158631 -56123858 + FLAM SINE Alu 78 118 -15 2258 116 0 0 chr12 88158650 88158960 -56123529 + AluSx SINE Alu 1 310 -2 7332 180 29 1 chr12 88159167 88160807 -56121682 + L1PA15 LINE L1 3918 5599 -562 548 248 24 8 chr12 88161680 88161805 -56120684 + MLT1J2 LTR MaLR 33 159 -291 331 204 21 43 chr12 88161935 88162028 -56120461 + MLT1J2 LTR MaLR 360 450 0 1298 221 113 0 chr12 88162353 88162688 -56119801 + L1MB7 LINE L1 5803 6175 -9 334 248 8 66 chr12 88162991 88163112 -56119377 - L1M4 LINE L1 -3090 3056 2943 327 223 0 65 chr12 88163128 88163221 -56119268 - MLT1I LTR MaLR -279 130 58 1125 138 30 30 chr12 88163522 88163725 -56118764 + L1PA15 LINE L1 5942 6144 -21 496 43 0 170 chr12 88164005 88164099 -56118390 - MADE1 DNA Mariner 0 80 3 351 254 22 22 chr12 88164267 88164401 -56118088 + CT-rich Low_complexity Low_complexity 3 136 0 438 140 0 103 chr12 88164490 88164597 -56117892 + L1PA11 LINE L1 6079 6174 0 193 374 93 14 chr12 88164598 88164737 -56117752 + L2 LINE L2 2707 2856 -458 4072 151 8 2 chr12 88165117 88165754 -56116735 + THE1C-int LTR MaLR 940 1580 0 2323 103 2 81 chr12 88165754 88166161 -56116328 + THE1C LTR MaLR 1 375 0 611 250 40 40 chr12 88166172 88166420 -56116069 + MLT1B LTR MaLR 93 340 -50 1228 264 152 9 chr12 88166643 88167228 -56115261 + L1ME3A LINE L1 5499 6158 -4 293 279 0 8 chr12 88168127 88168220 -56114269 - MLT1D LTR MaLR -402 103 11 281 264 122 34 chr12 88169286 88169434 -56113055 - L2 LINE L2 -5 3308 3148 327 260 123 39 chr12 88171386 88171540 -56110949 + MLT1H LTR MaLR 108 274 -275 238 286 78 73 chr12 88172020 88172226 -56110263 - L1MEd LINE L1 -5613 506 300 500 204 159 8 chr12 88172399 88172531 -56109958 - MER69A DNA AcHobo -17 160 9 209 204 0 0 chr12 88172553 88172602 -56109887 + T-rich Low_complexity Low_complexity 1 49 0 240 34 54 3 chr12 88172628 88172667 -56109822 + MSTA LTR MaLR 1 39 -325 548 291 36 59 chr12 88173104 88173222 -56109267 + MIR SINE MIR 31 144 -118 1591 192 43 0 chr12 88173222 88173525 -56108964 + AluSx SINE Alu 1 315 0 548 291 36 59 chr12 88173525 88173640 -56108849 + MIR SINE MIR 144 260 -2 21 36 0 0 chr12 88173767 88173795 -56108694 + AT_rich Low_complexity Low_complexity 1 28 0 305 319 126 15 chr12 88174032 88174167 -56108322 + MER5A DNA MER1_type 40 189 0 234 250 148 68 chr12 88174273 88174361 -56108128 + MIR SINE MIR 29 123 -139 2377 147 27 20 chr12 88174529 88174947 -56107542 - Tigger1 DNA MER2_type -211 2207 1784 2291 134 8 3 chr12 88174947 88175321 -56107168 - L1PA15 LINE L1 0 6165 5790 2377 147 27 20 chr12 88175321 88175344 -56107145 - Tigger1 DNA MER2_type -634 1784 1763 232 233 0 0 chr12 88175344 88175404 -56107085 + L1PA15 LINE L1 5123 5182 -964 959 110 7 0 chr12 88175404 88175549 -56106940 - Tigger1 DNA MER2_type -625 1793 1648 21 36 0 0 chr12 88175627 88175655 -56106834 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr12 88175697 88175727 -56106762 + GC_rich Low_complexity Low_complexity 1 30 0 6944 136 18 1 chr12 88176263 88177366 -56105123 + HERVL LTR ERVL 1596 2717 -2937 1430 114 19 5 chr12 88177355 88177566 -56104923 + HERVL LTR ERVL 3366 3579 -2075 * 4970 163 23 8 chr12 88177795 88178800 -56103689 + L1PA15 LINE L1 5147 6165 0 303 28 0 0 chr12 88179574 88179610 -56102879 + (CA)n Simple_repeat Simple_repeat 1 36 0 1882 156 30 30 chr12 88179638 88180011 -56102478 - THE1C LTR MaLR -2 373 1 787 270 81 48 chr12 88180885 88181685 -56100804 + L1M4 LINE L1 2838 3664 -2482 405 287 62 28 chr12 88181799 88182088 -56100401 + L1M4 LINE L1 4282 4580 -1566 4129 183 29 40 chr12 88182216 88183252 -56099237 + L1M1 LINE L1 1926 2948 -3900 6041 109 41 8 chr12 88183355 88184615 -56097874 + L1M1 LINE L1 5162 6470 -532 367 354 66 53 chr12 88185301 88185649 -56096840 - L2 LINE L2 -220 3052 2695 384 247 65 18 chr12 88185762 88185932 -56096557 + L1MEd LINE L1 11 188 -5931 483 280 70 79 chr12 88186029 88186372 -56096117 + L1MEd LINE L1 328 667 -5452 310 295 94 12 chr12 88186375 88186704 -56095785 + L1MEd LINE L1 685 1040 -5079 1129 95 0 0 chr12 88187335 88187493 -56094996 - L1MA2 LINE L1 0 6304 6147 1891 155 17 3 chr12 88187493 88187789 -56094700 - AluSc SINE Alu -9 300 1 2269 101 3 7 chr12 88187796 88188104 -56094385 - AluY SINE Alu -3 308 2 22 0 0 0 chr12 88188544 88188566 -56093923 + AT_rich Low_complexity Low_complexity 1 22 0 527 195 151 0 chr12 88189026 88189185 -56093304 - MER53 DNA DNA -5 184 2 511 280 75 19 chr12 88189379 88189593 -56092896 + MIR SINE MIR 5 230 -32 314 289 144 16 chr12 88190407 88190601 -56091888 - MIR SINE MIR -4 258 40 745 288 72 27 chr12 88190861 88191153 -56091336 - LTR16C LTR ERVL -41 450 146 201 336 119 30 chr12 88191422 88191556 -56090933 - L2 LINE L2 -452 2862 2717 300 164 16 0 chr12 88191714 88191775 -56090714 + L1PB3 LINE L1 6091 6152 -2 23 33 0 0 chr12 88191805 88191835 -56090654 + AT_rich Low_complexity Low_complexity 1 30 0 359 360 23 17 chr12 88243509 88243684 -56038805 + L2 LINE L2 2598 2773 -541 467 284 107 22 chr12 88243757 88243982 -56038507 + MIR SINE MIR 6 249 -13 390 241 52 43 chr12 88244013 88244129 -56038360 + MIR SINE MIR 18 134 -74 180 77 0 0 chr12 88244281 88244307 -56038182 + (CA)n Simple_repeat Simple_repeat 2 27 0 429 358 6 6 chr12 88244751 88245051 -56037438 + C-rich Low_complexity Low_complexity 1 300 0 234 244 0 58 chr12 88245068 88245154 -56037335 + CT-rich Low_complexity Low_complexity 4 84 0 5101 147 21 4 chr12 88245391 88246300 -56036189 - L1 LINE L1 -1208 4938 4015 1997 224 103 7 chr12 88246302 88246856 -56035633 - L1MCa LINE L1 -3016 3410 2804 504 254 15 30 chr12 88247080 88247214 -56035275 - L2 LINE L2 0 3313 3182 6736 42 2 1 chr12 88247317 88248165 -56034324 + L1P LINE L1 3141 3989 -2157 3491 173 7 3 chr12 88248162 88248763 -56033726 - L1MCa LINE L1 -5778 648 46 * 322 120 0 0 chr12 88248892 88248942 -56033547 - AluSc SINE Alu -6 293 244 34 65 0 0 chr12 88249613 88249675 -56032814 + AT_rich Low_complexity Low_complexity 1 62 0 484 217 83 61 chr12 88251100 88251368 -56031121 - MLT2B2 LTR ERVL -44 476 157 4938 52 31 0 chr12 88251475 88251627 -56030862 - L1P LINE L1 -3220 2926 2780 200 35 35 0 chr12 88251627 88251656 -56030833 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4938 52 31 0 chr12 88251656 88252156 -56030333 - L1P LINE L1 -3366 2780 2254 3153 189 30 3 chr12 88252152 88252760 -56029729 - L1P LINE L1 -5510 636 13 * 575 295 24 5 chr12 88252838 88253045 -56029444 + L1M4 LINE L1 3441 3651 -2495 8206 63 10 0 chr12 88253145 88254226 -56028263 - L1P LINE L1 -1507 4639 3548 618 165 0 0 chr12 88254343 88254434 -56028055 + AluJb SINE Alu 196 286 -26 26 88 0 0 chr12 88254788 88254856 -56027633 + AT_rich Low_complexity Low_complexity 1 68 0 1323 95 11 0 chr12 88255552 88255741 -56026748 - L1PA13 LINE L1 -191 5972 5782 490 95 14 0 chr12 88255741 88255813 -56026676 + L1PA13 LINE L1 6070 6144 -19 293 154 44 22 chr12 88255818 88255909 -56026580 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 317 169 197 0 chr12 88255912 88255983 -56026506 - MIR SINE MIR -56 206 122 1271 229 38 41 chr12 88256660 88257026 -56025463 - MLT1A1 LTR MaLR 0 365 1 235 338 38 32 chr12 88257132 88257289 -56025200 + L2 LINE L2 2446 2603 -711 644 188 140 17 chr12 88257536 88257729 -56024760 + LTR12 LTR ERV1 3 187 -527 309 226 65 32 chr12 88258041 88258134 -56024355 + L1MC4 LINE L1 6607 6702 -1340 1456 203 60 39 chr12 88259705 88260173 -56022316 + L1MA10 LINE L1 5858 6334 0 198 176 0 0 chr12 88260251 88260285 -56022204 + MIR SINE MIR 218 251 -11 2087 101 3 26 chr12 88260487 88260794 -56021695 - AluSg SINE Alu -10 300 1 1115 225 45 13 chr12 88261229 88261611 -56020878 - L1MCa LINE L1 -2991 3435 3042 30 59 0 0 chr12 88261611 88261662 -56020827 + AT_rich Low_complexity Low_complexity 1 51 0 1560 224 43 44 chr12 88261663 88262463 -56020026 - L1MCa LINE L1 -3383 3043 2240 2186 112 0 7 chr12 88262463 88262767 -56019722 - AluSg SINE Alu -8 302 1 1560 224 43 44 chr12 88262767 88262840 -56019649 - L1MCa LINE L1 -4186 2240 2168 201 143 0 0 chr12 88263793 88263828 -56018661 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 313 172 17 0 chr12 88264360 88264418 -56018071 - MER63 DNA MER1_type -58 1004 946 * 649 169 0 23 chr12 88264410 88264540 -56017949 + Charlie1 DNA MER1_type 2316 2442 -319 688 241 6 44 chr12 88264540 88264698 -56017791 + FAM SINE Alu 10 161 -24 220 374 10 10 chr12 88265479 88265578 -56016911 - MIR SINE MIR 0 262 164 236 286 33 22 chr12 88265685 88265776 -56016713 - MIR SINE MIR -97 165 74 561 284 155 9 chr12 88267760 88268095 -56014394 - L2 LINE L2 -357 2957 2574 197 239 119 15 chr12 88269157 88269224 -56013265 + L2 LINE L2 3235 3308 -5 266 242 0 16 chr12 88269311 88269373 -56013116 + L2 LINE L2 3210 3270 -2 803 243 0 0 chr12 88270645 88270818 -56011671 - FAM SINE Alu -2 173 1 1308 201 10 52 chr12 88271831 88272140 -56010349 + AluJo SINE Alu 1 296 -16 2278 79 7 3 chr12 88272973 88273264 -56009225 + AluSc SINE Alu 1 292 -17 1172 182 61 10 chr12 88273274 88273648 -56008841 + L1MC/D LINE L1 5122 5529 -752 1403 224 36 102 chr12 88273648 88274117 -56008372 - LTR40a LTR ERVL 0 519 25 237 264 0 0 chr12 88274167 88274220 -56008269 - MER5B DNA MER1_type -1 177 125 196 351 106 11 chr12 88274274 88274368 -56008121 - MER5B DNA MER1_type -69 109 7 31 82 0 0 chr12 88274827 88274900 -56007589 + AT_rich Low_complexity Low_complexity 1 73 0 5722 136 22 7 chr12 88275139 88276091 -56006398 + HERV9 LTR ERV1 1191 2156 -6243 1072 45 0 0 chr12 88276191 88276323 -56006166 - L1P LINE L1 -3238 2908 2777 * 10500 67 15 2 chr12 88276320 88277773 -56004716 + L1P3 LINE L1 3967 5438 -716 508 350 132 4 chr12 88278263 88278543 -56003946 + L2 LINE L2 2331 2646 -668 1247 261 114 10 chr12 88278552 88278954 -56003535 + L2 LINE L2 2866 3309 -4 1124 241 36 47 chr12 88279404 88279603 -56002886 - L1M4 LINE L1 -1581 4565 4365 674 209 23 0 chr12 88279603 88279732 -56002757 - FLAM_C SINE Alu 0 133 2 1124 241 36 47 chr12 88279732 88280005 -56002484 - L1M4 LINE L1 -1781 4365 4098 30 27 0 0 chr12 88280023 88280060 -56002429 + AT_rich Low_complexity Low_complexity 1 37 0 2002 214 71 45 chr12 88281305 88281869 -56000620 + L1MC3 LINE L1 7070 7655 -130 2297 76 0 3 chr12 88281869 88282159 -56000330 + AluY SINE Alu 1 289 -22 2002 214 71 45 chr12 88282159 88282253 -56000236 + L1MC3 LINE L1 7655 7745 -40 1586 172 24 24 chr12 88283005 88283131 -55999358 + AluJo SINE Alu 1 126 -186 261 0 0 0 chr12 88283131 88283160 -55999329 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1586 172 24 24 chr12 88283160 88283330 -55999159 + AluJo SINE Alu 125 297 -15 21 0 0 0 chr12 88283338 88283359 -55999130 + AT_rich Low_complexity Low_complexity 1 21 0 1134 202 0 9 chr12 88283997 88284215 -55998274 + Tigger3(Golem) DNA MER2_type 2811 3026 -3 347 181 0 134 chr12 88285316 88285443 -55997046 - MER7A DNA MER2_type -238 108 1 251 266 194 29 chr12 88286127 88286266 -55996223 - L2 LINE L2 0 3313 3152 363 343 53 39 chr12 88286419 88286626 -55995863 - L2 LINE L2 -406 2908 2699 251 306 41 10 chr12 88286663 88286761 -55995728 - L2 LINE L2 -964 2350 2250 627 121 0 0 chr12 88287353 88287452 -55995037 + (TCCC)n Simple_repeat Simple_repeat 4 102 0 229 400 75 12 chr12 88288375 88288695 -55993794 - L2 LINE L2 -672 2642 2303 54 40 0 30 chr12 88289092 88289193 -55993296 + AT_rich Low_complexity Low_complexity 1 98 0 299 242 88 0 chr12 88289362 88289453 -55993036 - L1ME LINE L1 -468 5653 5555 2148 124 3 3 chr12 88289735 88290034 -55992455 + AluSc SINE Alu 1 299 -10 207 173 0 0 chr12 88290557 88290609 -55991880 + C-rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr12 88290824 88290849 -55991640 + AT_rich Low_complexity Low_complexity 1 25 0 224 122 61 207 chr12 88290956 88291038 -55991451 - MIR3 SINE MIR -9 199 130 23 33 0 0 chr12 88291246 88291276 -55991213 + AT_rich Low_complexity Low_complexity 1 30 0 36 70 0 0 chr12 88291655 88291726 -55990763 + AT_rich Low_complexity Low_complexity 1 71 0 210 306 0 71 chr12 88291915 88292000 -55990489 - L2 LINE L2 0 3272 3194 10873 47 9 1 chr12 88292279 88293674 -55988815 + L1P LINE L1 3314 4719 -1427 1322 163 204 0 chr12 88294210 88294499 -55987990 + MER7A DNA MER2_type 1 346 0 558 290 134 17 chr12 88296024 88296255 -55986234 - MIR SINE MIR 0 262 5 21 0 0 0 chr12 88296669 88296690 -55985799 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr12 88296992 88297018 -55985471 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr12 88298180 88298215 -55984274 + AT_rich Low_complexity Low_complexity 1 35 0 1651 220 117 11 chr12 88298327 88298946 -55983543 - L1M3 LINE L1 -701 5467 4777 244 214 135 24 chr12 88298953 88299079 -55983410 - L1M3 LINE L1 -1326 4820 4681 224 304 9 18 chr12 88299195 88299307 -55983182 + CT-rich Low_complexity Low_complexity 1 111 0 * 303 296 8 15 chr12 88299233 88299501 -55982988 + C-rich Low_complexity Low_complexity 1 265 0 973 116 6 47 chr12 88301074 88301246 -55981243 + L1M1 LINE L1 5641 5805 -495 1068 250 121 7 chr12 88302637 88302774 -55979715 + L1ME1 LINE L1 5584 5704 -462 1868 169 0 0 chr12 88302774 88303070 -55979419 + AluSx SINE Alu 1 296 -16 1068 250 121 7 chr12 88303070 88303344 -55979145 + L1ME1 LINE L1 5704 6042 -124 189 0 0 0 chr12 88303610 88303631 -55978858 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 26 0 0 0 chr12 88303914 88303940 -55978549 + AT_rich Low_complexity Low_complexity 1 26 0 301 301 86 43 chr12 88304190 88304399 -55978090 + L1ME4a LINE L1 5653 5870 -251 1277 123 25 83 chr12 88304408 88304685 -55977804 + AluSq SINE Alu 1 261 -52 701 152 87 0 chr12 88305063 88305201 -55977288 + L1PA15 LINE L1 6016 6165 0 269 358 0 0 chr12 88305516 88305597 -55976892 + MIR SINE MIR 25 105 -103 25 31 0 0 chr12 88306452 88306484 -55976005 + AT_rich Low_complexity Low_complexity 1 32 0 294 232 29 0 chr12 88306920 88306989 -55975500 + MIR SINE MIR 122 192 -70 21 36 0 0 chr12 88307005 88307033 -55975456 + AT_rich Low_complexity Low_complexity 1 28 0 204 250 29 15 chr12 88307070 88307138 -55975351 + MIR SINE MIR 164 232 -30 24 0 0 0 chr12 88307544 88307568 -55974921 + AT_rich Low_complexity Low_complexity 1 24 0 311 292 82 29 chr12 88308010 88308253 -55974236 - MER110-int LTR ERV1 -3794 3007 2752 483 209 0 0 chr12 88308387 88308473 -55974016 - Tigger7 DNA MER2_type -1 2486 2401 1184 227 74 0 chr12 88308488 88308730 -55973759 - Tigger7 DNA MER2_type -466 267 8 257 305 53 11 chr12 88308763 88308858 -55973631 - MER110-int LTR ERV1 -4205 442 344 22 35 0 0 chr12 88309401 88309430 -55973059 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr12 88309776 88309828 -55972661 + AT_rich Low_complexity Low_complexity 1 52 0 248 324 95 27 chr12 88310094 88310242 -55972247 + L1ME LINE L1 5482 5639 -482 249 260 52 0 chr12 88310741 88310818 -55971671 - L1ME LINE L1 -5940 130 50 696 299 121 33 chr12 88310855 88311186 -55971303 + L2 LINE L2 2606 2965 -349 622 288 11 0 chr12 88311193 88311370 -55971119 - MIR SINE MIR -55 207 29 777 267 50 33 chr12 88311678 88311981 -55970508 + pTR5 LTR ERV1 740 1047 -1391 1048 291 141 6 chr12 88312116 88312590 -55969899 - L2 LINE L2 -1072 2242 1705 197 206 0 0 chr12 88312587 88312621 -55969868 - MIR SINE MIR -225 37 4 * 916 215 52 17 chr12 88314264 88314552 -55967937 + L1M1 LINE L1 2988 3285 -4280 680 191 44 67 chr12 88314555 88314786 -55967703 + L1MEc LINE L1 2185 2384 -3831 383 258 53 8 chr12 88314814 88314946 -55967543 + L1MEc LINE L1 3024 3161 -3054 4260 168 40 6 chr12 88314951 88315748 -55966741 + Tigger2 DNA MER2_type 33 856 -1862 849 198 32 0 chr12 88315744 88315901 -55966588 + Tigger2 DNA MER2_type 2556 2717 -1 * 3419 205 50 10 chr12 88315901 88316471 -55966018 + L1M1 LINE L1 3754 4370 -3195 2418 84 0 0 chr12 88316471 88316780 -55965709 - AluSx SINE Alu -3 309 1 3419 205 50 10 chr12 88316780 88317040 -55965449 + L1M1 LINE L1 4370 4618 -2947 758 295 57 24 chr12 88317035 88317404 -55965085 + L1ME3A LINE L1 5571 5951 -219 * 217 347 73 10 chr12 88317748 88317863 -55964626 - MIR SINE MIR -48 160 39 8458 101 0 7 chr12 88318425 88319652 -55962837 - L1P LINE L1 -3943 2203 986 1994 114 0 0 chr12 88319784 88320090 -55962399 - AluSx SINE Alu 0 316 11 198 103 0 0 chr12 88320110 88320139 -55962350 + (GGAGA)n Simple_repeat Simple_repeat 3 31 0 423 340 127 30 chr12 88320384 88320942 -55961547 + L2 LINE L2 2021 2632 -682 880 289 80 36 chr12 88321103 88321630 -55960859 + L2 LINE L2 2636 3186 -127 756 271 55 17 chr12 88321922 88322158 -55960331 + MIR SINE MIR 18 262 0 260 244 176 41 chr12 88322830 88323051 -55959438 - L1M4 LINE L1 -2701 3445 3195 1004 293 47 23 chr12 88323205 88323761 -55958728 - L1M4 LINE L1 -3193 2953 2385 252 304 0 14 chr12 88323881 88323950 -55958539 - Zaphod DNA AcHobo -3960 71 4 546 275 161 10 chr12 88324078 88324271 -55958218 + L2 LINE L2 275 496 -2818 557 186 0 48 chr12 88324278 88324402 -55958087 - MLT1J LTR MaLR -7 560 443 239 333 36 12 chr12 88324612 88324696 -55957793 + L2 LINE L2 2968 3053 -260 600 263 99 96 chr12 88324836 88325201 -55957288 - MLT1J LTR MaLR -115 396 31 733 143 34 20 chr12 88325523 88325537 -55956952 - L1M LINE L1 -871 5429 5417 802 239 23 27 chr12 88325537 88325796 -55956693 + MIR SINE MIR 5 262 0 4172 139 16 25 chr12 88325796 88326550 -55955939 - L1MA4A LINE L1 -14 6289 5543 733 143 34 20 chr12 88326550 88326681 -55955808 - L1M LINE L1 -882 5418 5281 36 23 0 0 chr12 88326928 88326971 -55955518 + AT_rich Low_complexity Low_complexity 1 43 0 40 0 0 0 chr12 88328047 88328087 -55954402 + AT_rich Low_complexity Low_complexity 1 40 0 727 196 48 48 chr12 88328372 88328561 -55953928 + L1MA9 LINE L1 6035 6223 -89 2082 142 12 6 chr12 88328568 88328893 -55953596 - MER47A DNA MER2_type -1 365 39 205 167 0 42 chr12 88328948 88328996 -55953493 + A-rich Low_complexity Low_complexity 4 49 0 306 238 99 17 chr12 88329311 88329492 -55952997 + HAL1 LINE L1 881 1076 -1431 22 0 0 0 chr12 88329732 88329754 -55952735 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr12 88330754 88330801 -55951688 + AT_rich Low_complexity Low_complexity 1 47 0 23 68 0 0 chr12 88330908 88330952 -55951537 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chr12 88331137 88331181 -55951308 + AT_rich Low_complexity Low_complexity 1 44 0 34 0 0 0 chr12 88332235 88332269 -55950220 + AT_rich Low_complexity Low_complexity 1 34 0 828 264 32 52 chr12 88332431 88332681 -55949808 + MIR SINE MIR 18 262 0 249 292 104 19 chr12 88332715 88332869 -55949620 - MIR SINE MIR 0 262 96 187 327 147 19 chr12 88332987 88333143 -55949346 - MIR SINE MIR -39 223 48 180 0 0 0 chr12 88338805 88338825 -55943664 + (TA)n Simple_repeat Simple_repeat 1 20 0 2447 258 70 33 chr12 88338960 88339323 -55943166 + L1MD1 LINE L1 14 362 -6178 333 0 0 0 chr12 88339323 88339360 -55943129 + (CA)n Simple_repeat Simple_repeat 2 38 0 2447 258 70 33 chr12 88339360 88339730 -55942759 + L1MD1 LINE L1 362 774 -5766 2576 235 63 30 chr12 88339779 88340938 -55941551 + L1MD1 LINE L1 1215 6636 0 1517 220 105 27 chr12 88340930 88341067 -55941422 + L1M1 LINE L1 2385 2510 -5055 * 2528 147 16 16 chr12 88341067 88341495 -55940994 - MSTB1 LTR MaLR -4 428 1 1517 220 105 27 chr12 88341495 88341871 -55940618 + L1M1 LINE L1 2510 2938 -4627 258 154 0 0 chr12 88342282 88342334 -55940155 + L1MA8 LINE L1 6239 6290 -1 278 333 54 27 chr12 88342380 88342491 -55939998 - L2 LINE L2 -43 3229 3116 267 318 87 0 chr12 88342632 88342758 -55939731 - MIR SINE MIR -2 260 124 527 215 163 23 chr12 88342796 88342968 -55939521 + MER90 LTR ERV1 35 230 -345 430 240 0 10 chr12 88342958 88343054 -55939435 + MLT1F LTR MaLR 235 329 -213 * 329 259 12 12 chr12 88343079 88343160 -55939329 + MLT1F LTR MaLR 303 383 -159 525 172 62 28 chr12 88343562 88343707 -55938782 - Charlie2 DNA MER1_type -455 2407 2258 977 170 0 0 chr12 88343926 88344079 -55938410 + FRAM SINE Alu 1 150 -26 227 300 110 0 chr12 88344398 88344498 -55937991 - MIR SINE MIR -52 210 100 591 249 67 0 chr12 88345030 88345195 -55937294 + MIR SINE MIR 87 262 0 339 232 49 0 chr12 88345391 88345473 -55937016 - L2 LINE L2 -2 3270 3185 413 286 32 16 chr12 88345495 88345684 -55936805 - Charlie7 DNA MER1_type -1 2611 2420 247 313 199 28 chr12 88345800 88346011 -55936478 - L2 LINE L2 -191 3081 2835 393 277 10 0 chr12 88346475 88346576 -55935913 - MIR SINE MIR -39 223 122 243 353 123 55 chr12 88347171 88347627 -55934862 - L2 LINE L2 -338 2976 2490 361 241 129 0 chr12 88349165 88349281 -55933208 + MIR SINE MIR 120 250 -12 24 0 0 0 chr12 88349626 88349650 -55932839 + AT_rich Low_complexity Low_complexity 1 24 0 5418 158 41 74 chr12 88349849 88350919 -55931570 + L1MCa LINE L1 26 1055 -5371 1810 191 3 0 chr12 88350919 88351228 -55931261 + AluJo SINE Alu 1 310 -2 5418 158 41 74 chr12 88351228 88351350 -55931139 + L1MCa LINE L1 1055 1179 -5247 386 174 35 0 chr12 88351808 88351894 -55930595 + L1MC3 LINE L1 7009 7097 -688 294 315 11 0 chr12 88351894 88351983 -55930506 + MLT1F1 LTR MaLR 35 124 -443 514 121 11 11 chr12 88351993 88352084 -55930405 + L1MC3 LINE L1 7199 7289 -496 1902 181 74 48 chr12 88352200 88352566 -55929923 + L1MC3 LINE L1 7275 7657 -128 2310 73 0 0 chr12 88352566 88352855 -55929634 + AluY SINE Alu 1 289 -22 1902 181 74 48 chr12 88352855 88352963 -55929526 + L1MC3 LINE L1 7657 7761 -24 778 316 35 0 chr12 88352989 88353217 -55929272 - MIR SINE MIR -4 258 23 1304 153 10 12 chr12 88353983 88354231 -55928258 - L1MA5A LINE L1 -208 6089 5843 1228 148 40 0 chr12 88354432 88354634 -55927855 + MER2 DNA MER2_type 1 210 -135 14041 173 21 11 chr12 88354643 88355645 -55926844 - L1MA5A LINE L1 -3 6996 6006 180 77 0 0 chr12 88355645 88355671 -55926818 + (TTG)n Simple_repeat Simple_repeat 2 27 0 14041 173 21 11 chr12 88355671 88358629 -55923860 - L1MA5A LINE L1 -993 6006 2994 216 0 0 0 chr12 88358629 88358653 -55923836 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 278 200 20 0 chr12 88358691 88358741 -55923748 - Alu SINE Alu -249 51 1 3673 202 27 32 chr12 88358742 88359765 -55922724 - L1MA5A LINE L1 -3848 3000 1988 2361 112 19 19 chr12 88360976 88361351 -55921138 - THE1C LTR MaLR 0 375 1 336 250 48 0 chr12 88364611 88364715 -55917774 - Charlie4 DNA MER1_type -8 1953 1845 3429 233 74 13 chr12 88364729 88365793 -55916696 + L1ME1 LINE L1 5041 6161 -5 663 201 112 6 chr12 88367059 88367228 -55915261 - MER3 DNA MER1_type 0 209 23 513 210 47 32 chr12 88367259 88367464 -55915025 - MER58 DNA MER1_type -3 2417 1 335 337 84 6 chr12 88367485 88367663 -55914826 - L2 LINE L2 -4 3309 3118 311 136 17 0 chr12 88370138 88370197 -55912292 + (TA)n Simple_repeat Simple_repeat 2 61 0 1090 205 43 12 chr12 88370496 88370754 -55911735 - L1MD3 LINE L1 -1 7994 7729 2014 136 0 3 chr12 88371513 88371824 -55910665 + AluSq SINE Alu 1 310 0 329 293 113 39 chr12 88372304 88372533 -55909956 + Charlie8 DNA MER1_type 171 416 -2001 812 226 6 0 chr12 88372700 88372864 -55909625 + MIR SINE MIR 68 232 -30 191 213 106 0 chr12 88373104 88373151 -55909338 - L3 LINE CR1 0 1577 1526 1780 140 24 0 chr12 88373151 88373456 -55909033 - MER58B DNA MER1_type 0 341 26 219 299 38 57 chr12 88373458 88373615 -55908874 - MER5A DNA MER1_type -29 160 7 324 281 94 79 chr12 88373899 88374166 -55908323 + L1MC4a LINE L1 5681 5951 -1857 842 253 5 5 chr12 88375077 88375279 -55907210 + MLT1B LTR MaLR 188 389 -1 2278 204 98 62 chr12 88375283 88376078 -55906411 - LTR1B LTR ERV1 0 826 3 691 302 25 47 chr12 88376168 88376446 -55906043 - MLT1K LTR MaLR -297 291 20 198 0 0 0 chr12 88376534 88376556 -55905933 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 364 250 45 80 chr12 88377481 88377681 -55904808 - LTR67 LTR ERVL -15 542 350 305 263 80 44 chr12 88377862 88377999 -55904490 + L1ME LINE L1 5574 5715 -406 213 277 48 0 chr12 88377999 88378082 -55904407 + L3 LINE CR1 634 720 -857 1523 186 38 28 chr12 88378105 88378395 -55904094 + AluJo SINE Alu 1 293 -19 550 316 84 19 chr12 88378440 88378750 -55903739 + L3 LINE CR1 740 1069 -508 207 354 131 8 chr12 88378807 88378937 -55903552 + L3 LINE CR1 1328 1473 -104 34 55 0 0 chr12 88378963 88379018 -55903471 + AT_rich Low_complexity Low_complexity 1 55 0 2435 77 0 0 chr12 88379212 88379511 -55902978 + AluY SINE Alu 1 299 -12 281 286 0 71 chr12 88379521 88379619 -55902870 + L3 LINE CR1 852 942 -635 9046 209 50 8 chr12 88380789 88380800 -55901689 - L1M2c LINE L1 -4825 1964 1955 2339 76 0 0 chr12 88380800 88381090 -55901399 + AluY SINE Alu 1 290 -21 9046 209 50 8 chr12 88381090 88382961 -55899528 - L1M2c LINE L1 -4834 1955 3 23 0 0 0 chr12 88384009 88384032 -55898457 + AT_rich Low_complexity Low_complexity 1 23 0 1481 90 67 14 chr12 88384255 88384478 -55898011 - MER46A DNA MER2_type -1 235 1 257 202 83 0 chr12 88386831 88386915 -55895574 - L1ME4a LINE L1 -12 6109 6019 23 33 0 0 chr12 88387011 88387041 -55895448 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 88387618 88387639 -55894850 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 88388398 88388434 -55894055 + AT_rich Low_complexity Low_complexity 1 36 0 412 209 12 137 chr12 88388547 88388737 -55893752 - L1MC4 LINE L1 0 8042 7758 355 225 40 145 chr12 88388883 88389261 -55893228 - L1MC5 LINE L1 -420 7541 7243 2304 86 10 0 chr12 88389691 88389993 -55892496 + AluSq SINE Alu 1 305 -8 454 290 73 16 chr12 88390412 88390536 -55891953 - L2 LINE L2 -5 3267 3137 392 276 42 28 chr12 88390624 88390802 -55891687 + MIR SINE MIR 7 190 -64 809 285 100 10 chr12 88390813 88391104 -55891385 - MER110 LTR ERV1 -12 479 163 5845 108 21 5 chr12 88391517 88393624 -55888865 + L1PA16 LINE L1 4020 6157 -9 21 0 0 0 chr12 88393662 88393683 -55888806 + AT_rich Low_complexity Low_complexity 1 21 0 * 253 261 106 9 chr12 88393678 88393861 -55888628 - L1M4 LINE L1 -3783 2599 2396 2407 74 0 16 chr12 88395096 88395406 -55887083 - AluSq SINE Alu -8 305 1 23 0 0 0 chr12 88395617 88395640 -55886849 + AT_rich Low_complexity Low_complexity 1 23 0 240 200 0 0 chr12 88396163 88396208 -55886281 - L1M4 LINE L1 -1910 4236 4192 1972 240 40 14 chr12 88396215 88396785 -55885704 + L1M1 LINE L1 2453 3037 -4528 * 10494 163 34 75 chr12 88396767 88401296 -55881193 + L1PA4 LINE L1 2025 6367 -24 1640 39 5 0 chr12 88401296 88401489 -55881000 + L1PA4 LINE L1 5948 6152 -3 10494 163 34 75 chr12 88401489 88401513 -55880976 + L1PA4 LINE L1 6367 6390 -1 4751 162 33 21 chr12 88401497 88403078 -55879411 + L1MA8 LINE L1 4692 6288 -3 * 190 240 13 80 chr12 88403367 88403442 -55879047 + MER5C DNA MER1_type 18 87 -237 272 288 79 46 chr12 88403679 88403919 -55878570 - L1ME LINE L1 -240 5881 5634 38 0 0 0 chr12 88403924 88403962 -55878527 + AT_rich Low_complexity Low_complexity 1 38 0 875 247 35 66 chr12 88404909 88405168 -55877321 - MIR SINE MIR 0 262 12 845 305 57 32 chr12 88405723 88406129 -55876360 + MER90 LTR ERV1 190 605 -9 595 342 105 14 chr12 88406195 88406625 -55875864 - L2 LINE L2 -936 2378 1910 1556 191 71 44 chr12 88406625 88407167 -55875322 + MLT2A2 LTR ERVL 16 554 0 802 255 11 5 chr12 88407321 88407509 -55874980 + MIR SINE MIR 12 200 -62 509 349 51 53 chr12 88407598 88408162 -55874327 - L2 LINE L2 -448 2866 2304 188 297 77 89 chr12 88408397 88408734 -55873755 - L2 LINE L2 -2779 535 203 216 338 44 37 chr12 88408937 88409073 -55873416 + L2 LINE L2 2959 3095 -177 189 0 0 0 chr12 88409190 88409211 -55873278 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 2835 143 63 16 chr12 88409608 88410166 -55872323 - L1MA7 LINE L1 0 6291 5708 5130 160 18 1 chr12 88410267 88411121 -55871368 - L1P LINE L1 -5268 878 11 3487 257 187 31 chr12 88411135 88413974 -55868515 - L1M1 LINE L1 -4140 2966 1 310 220 204 68 chr12 88414612 88414744 -55867745 + MER91A DNA MER1_type 22 171 -25 217 245 43 106 chr12 88414990 88415020 -55867469 + MIR SINE MIR 168 198 -64 249 119 0 0 chr12 88415020 88415062 -55867427 + (TA)n Simple_repeat Simple_repeat 2 43 0 217 245 43 106 chr12 88415062 88415125 -55867364 + MIR SINE MIR 198 255 -7 270 263 237 19 chr12 88416263 88416419 -55866070 - Charlie8 DNA MER1_type -2154 263 74 528 226 95 63 chr12 88416577 88416798 -55865691 - MLT1K LTR MaLR -8 580 353 513 47 0 0 chr12 88417169 88417233 -55865256 + (CA)n Simple_repeat Simple_repeat 2 65 0 6156 85 26 31 chr12 88417554 88418737 -55863752 - L1PA11 LINE L1 0 6174 4991 270 224 0 65 chr12 88418738 88418800 -55863689 - L1P LINE L1 -3027 3119 3065 2235 96 0 53 chr12 88418800 88419123 -55863366 - AluSx SINE Alu -6 306 1 270 224 0 65 chr12 88419123 88419167 -55863322 - L1P LINE L1 -3081 3065 3020 1704 159 34 22 chr12 88419774 88420094 -55862395 + MER47A DNA MER2_type 43 366 0 532 230 20 0 chr12 88420870 88420970 -55861519 + FRAM SINE Alu 1 101 -75 234 0 0 0 chr12 88421806 88421832 -55860657 + (CA)n Simple_repeat Simple_repeat 2 27 0 242 209 75 30 chr12 88422023 88422090 -55860399 + L1MC4 LINE L1 6961 7030 -1012 2083 112 35 0 chr12 88423175 88423461 -55859028 + AluSq SINE Alu 1 296 -17 30 0 0 0 chr12 88423462 88423492 -55858997 + AT_rich Low_complexity Low_complexity 1 30 0 508 353 79 48 chr12 88423679 88424212 -55858277 - L2 LINE L2 -117 3196 2630 1743 146 66 30 chr12 88424473 88424652 -55857837 - THE1C LTR MaLR 0 375 204 444 19 0 0 chr12 88424652 88424705 -55857784 + (GA)n Simple_repeat Simple_repeat 1 53 0 1743 146 66 30 chr12 88424705 88424887 -55857602 - THE1C LTR MaLR -171 204 1 507 343 7 0 chr12 88425578 88425724 -55856765 - MIR3 SINE MIR -39 169 23 21 36 0 0 chr12 88426117 88426145 -55856344 + AT_rich Low_complexity Low_complexity 1 28 0 234 327 96 39 chr12 88426796 88426952 -55855537 + MIR SINE MIR 50 214 -48 252 240 72 62 chr12 88427468 88427950 -55854539 + L1MC5 LINE L1 7011 7474 -568 295 337 61 0 chr12 88428115 88428213 -55854276 - L2 LINE L2 0 3313 3210 307 221 94 55 chr12 88428405 88428532 -55853957 + L1MCa LINE L1 1941 2072 -4354 1564 202 19 95 chr12 88430175 88430640 -55851849 + MER63B DNA MER1_type 1 430 -6 247 250 0 0 chr12 88430748 88430804 -55851685 + CT-rich Low_complexity Low_complexity 1 56 0 2166 104 0 23 chr12 88431481 88431788 -55850701 + AluSx SINE Alu 1 300 -12 1784 183 0 16 chr12 88432135 88432447 -55850042 + AluJb SINE Alu 1 307 -5 317 351 18 0 chr12 88433032 88433143 -55849346 - MER5A DNA MER1_type -28 161 49 1063 257 69 29 chr12 88433626 88434034 -55848455 - MLT1C LTR MaLR 0 467 44 190 210 97 16 chr12 88434183 88434245 -55848244 - MIR SINE MIR -172 90 24 292 243 95 0 chr12 88434521 88434595 -55847894 - MIR SINE MIR -1 261 181 358 309 19 47 chr12 88434693 88434871 -55847618 + MIR SINE MIR 20 192 -63 29 28 0 0 chr12 88436382 88436418 -55846071 + AT_rich Low_complexity Low_complexity 1 36 0 697 184 35 0 chr12 88437730 88437871 -55844618 - L1MB1 LINE L1 -15 6174 6029 221 325 63 56 chr12 88438946 88439072 -55843417 + L3 LINE CR1 1372 1498 -79 710 259 136 31 chr12 88439212 88439553 -55842936 - MLT1J2 LTR MaLR -8 442 67 322 277 52 45 chr12 88439778 88439933 -55842556 + MLT1H LTR MaLR 13 168 -381 271 280 97 77 chr12 88440023 88440230 -55842259 + MLT1H LTR MaLR 339 549 0 835 198 78 16 chr12 88440879 88441071 -55841418 - MER20 DNA MER1_type 0 219 16 21 0 0 0 chr12 88441177 88441198 -55841291 + AT_rich Low_complexity Low_complexity 1 21 0 2134 124 3 0 chr12 88441848 88442146 -55840343 - AluSx SINE Alu -12 300 2 3405 51 0 0 chr12 88442803 88443232 -55839257 - L1P LINE L1 -1120 5026 4598 6059 42 3 0 chr12 88443232 88443964 -55838525 + L1PA5 LINE L1 5416 6151 -3 1153 270 56 58 chr12 88444782 88445316 -55837173 - MLT1H LTR MaLR -16 533 1 603 313 32 16 chr12 88445715 88445964 -55836525 - LTR36 LTR ERV1 0 611 359 503 90 13 0 chr12 88446005 88446083 -55836406 + (TC)n Simple_repeat Simple_repeat 2 80 0 608 94 0 62 chr12 88446158 88446254 -55836235 - MER84-int LTR ERV1 -2665 2289 2200 854 146 35 0 chr12 88446256 88446400 -55836089 + MER84 LTR ERVI 359 507 0 26 64 0 0 chr12 88446557 88446604 -55835885 + GC_rich Low_complexity Low_complexity 1 47 0 490 335 29 21 chr12 88446743 88446985 -55835504 - LTR36 LTR ERV1 -9 602 359 503 90 13 0 chr12 88447026 88447104 -55835385 + (TC)n Simple_repeat Simple_repeat 2 80 0 608 94 0 62 chr12 88447179 88447275 -55835214 - MER84-int LTR ERV1 -2665 2289 2200 854 146 35 0 chr12 88447277 88447421 -55835068 + MER84 LTR ERVI 359 507 0 333 281 209 14 chr12 88447702 88447912 -55834577 + MIR SINE MIR 11 261 -1 279 277 54 68 chr12 88447951 88448099 -55834390 + MER77 LTR ERV1 57 202 -403 * 1091 255 61 113 chr12 88448067 88448637 -55833852 + MER77 LTR ERV1 98 741 -6 202 325 67 25 chr12 88449051 88449171 -55833318 - MIR SINE MIR 0 262 138 786 277 77 26 chr12 88449178 88449488 -55833001 - MER110 LTR ERV1 0 491 166 1294 233 80 19 chr12 88449644 88450017 -55832472 + MSTD LTR MaLR 1 396 0 247 216 82 72 chr12 88450250 88450347 -55832142 + MER110A LTR ERV1 73 170 -298 270 313 10 10 chr12 88450404 88450500 -55831989 + MER110 LTR ERV1 178 273 -218 22 0 0 0 chr12 88450501 88450523 -55831966 + AT_rich Low_complexity Low_complexity 1 22 0 2006 107 0 27 chr12 88450523 88450562 -55831927 - AluSq SINE Alu -1 312 273 324 0 0 0 chr12 88450562 88450598 -55831891 + (GA)n Simple_repeat Simple_repeat 1 36 0 2006 107 0 27 chr12 88450598 88450856 -55831633 - AluSq SINE Alu -40 273 23 279 287 16 106 chr12 88451169 88451357 -55831132 - MIR SINE MIR -18 244 74 2173 179 34 34 chr12 88451381 88451851 -55830638 - L1MA7 LINE L1 -36 6255 5786 2228 149 16 5 chr12 88451854 88452222 -55830267 - Tigger2 DNA MER2_type -3 2715 2344 324 44 0 0 chr12 88452254 88452299 -55830190 + L1PA3 LINE L1 6111 6155 0 251 114 45 0 chr12 88452320 88452364 -55830125 - Tigger2 DNA MER2_type -2672 46 1 2155 159 3 0 chr12 88452364 88452717 -55829772 - L1MA7 LINE L1 -502 5789 5436 1921 103 4 0 chr12 88452722 88452983 -55829506 - AluSp SINE Alu -7 306 45 10314 192 26 37 chr12 88453465 88454550 -55827939 - L1MA7 LINE L1 -1310 4836 3741 637 186 17 8 chr12 88454550 88454668 -55827821 - FLAM_A SINE Alu -13 120 2 10314 192 26 37 chr12 88454668 88456193 -55826296 - L1MA7 LINE L1 -2405 3741 2254 566 63 13 0 chr12 88456193 88456272 -55826217 + (TTCC)n Simple_repeat Simple_repeat 4 83 0 1637 164 13 45 chr12 88456297 88456608 -55825881 - AluJo SINE Alu -7 305 5 378 264 79 31 chr12 88456613 88456840 -55825649 - L1M4c LINE L1 -3886 2498 2261 22237 60 9 8 chr12 88456859 88460627 -55821862 - L1PA5 LINE L1 -3 6151 2381 411 259 119 7 chr12 88460737 88460880 -55821609 - LTR67 LTR ERVL -32 525 367 1569 128 37 47 chr12 88460932 88461228 -55821261 - HSMAR2 DNA Mariner -1008 294 2 1986 140 76 12 chr12 88461365 88461707 -55820782 - THE1B LTR MaLR 0 364 1 2342 88 3 0 chr12 88461991 88462297 -55820192 + AluSp SINE Alu 4 310 -3 21 0 0 0 chr12 88463133 88463154 -55819335 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr12 88463186 88463221 -55819268 + AT_rich Low_complexity Low_complexity 1 35 0 4570 72 7 67 chr12 88464030 88464729 -55817760 - L1PB1 LINE L1 0 6151 5495 22 0 0 0 chr12 88465602 88465624 -55816865 + AT_rich Low_complexity Low_complexity 1 22 0 2420 51 0 0 chr12 88466413 88466709 -55815780 - L1PA5 LINE L1 0 6154 5859 8771 223 81 28 chr12 88466709 88469312 -55813177 + L1M4c LINE L1 1338 4191 -2191 240 35 0 0 chr12 88469312 88469341 -55813148 + (TAGA)n Simple_repeat Simple_repeat 4 32 0 8771 223 81 28 chr12 88469341 88470124 -55812365 + L1M4c LINE L1 4191 4931 -1451 206 290 183 15 chr12 88470782 88470913 -55811576 - MIR SINE MIR -10 252 100 50 59 0 0 chr12 88471643 88471728 -55810761 + AT_rich Low_complexity Low_complexity 1 85 0 424 299 152 18 chr12 88472350 88472574 -55809915 - MIR SINE MIR 0 262 9 29 0 0 0 chr12 88473221 88473250 -55809239 + AT_rich Low_complexity Low_complexity 1 29 0 1180 117 0 0 chr12 88473376 88473539 -55808950 - L1P LINE L1 -4484 1662 1500 * 25630 96 6 7 chr12 88473530 88477916 -55804573 + L1PA7 LINE L1 1625 6002 -152 1057 281 6 22 chr12 88478476 88478796 -55803693 + L1MA6 LINE L1 5962 6276 -24 2275 181 43 41 chr12 88478802 88479317 -55803172 - L1MA5 LINE L1 0 6300 5785 353 362 48 14 chr12 88479646 88479853 -55802636 + MIR SINE MIR 18 231 -31 393 261 36 9 chr12 88480945 88481056 -55801433 + MER81 DNA DNA 1 114 0 323 293 28 47 chr12 88481573 88481679 -55800810 - LTR67 LTR ERVL -351 206 103 354 80 0 0 chr12 88482286 88482336 -55800153 + (TA)n Simple_repeat Simple_repeat 2 51 0 559 368 82 16 chr12 88484141 88484565 -55797924 + L2 LINE L2 2335 2786 -528 452 324 55 89 chr12 88484636 88484997 -55797492 + L2 LINE L2 2924 3272 0 394 270 186 23 chr12 88485303 88485492 -55796997 + MIR SINE MIR 40 257 -5 197 244 67 0 chr12 88485512 88485557 -55796932 + L2 LINE L2 3263 3310 -3 1932 129 25 0 chr12 88485586 88485866 -55796623 + AluSp SINE Alu 1 287 -26 231 278 0 0 chr12 88485866 88485963 -55796526 + L1MC4 LINE L1 6615 6711 -1331 1610 199 42 30 chr12 88486523 88486884 -55795605 + MLT1A1 LTR MaLR 1 365 0 228 397 15 0 chr12 88487059 88487190 -55795299 - L2 LINE L2 -460 2854 2722 441 222 204 43 chr12 88487358 88487520 -55794969 - MER5A DNA MER1_type -1 188 1 261 340 10 21 chr12 88487525 88487622 -55794867 + L2 LINE L2 3177 3272 0 722 227 13 13 chr12 88488674 88488828 -55793661 + MLT1A1 LTR MaLR 3 156 -209 4017 197 40 28 chr12 88488830 88489421 -55793068 + L1 LINE L1 4061 4670 -1476 2129 118 3 0 chr12 88489421 88489708 -55792781 + AluSc SINE Alu 1 288 -21 4017 197 40 28 chr12 88489708 88490129 -55792360 + L1 LINE L1 4670 5085 -1061 * 5809 133 9 7 chr12 88490124 88491110 -55791379 + L1PA16 LINE L1 5178 6158 -8 896 213 17 64 chr12 88491126 88491361 -55791128 + MLT1A1 LTR MaLR 142 365 0 25627 95 15 29 chr12 88491742 88496526 -55785963 - L1P3 LINE L1 -1686 4775 5 2805 210 8 0 chr12 88496535 88497202 -55785287 + L1M1 LINE L1 2189 2860 -4705 22 99 0 0 chr12 88497240 88497311 -55785178 + AT_rich Low_complexity Low_complexity 1 71 0 5968 208 29 23 chr12 88497327 88499498 -55782991 + L1M1 LINE L1 2882 5057 -2508 672 160 0 0 chr12 88499498 88499598 -55782891 + FLAM_C SINE Alu 8 107 -36 377 144 40 36 chr12 88499605 88499893 -55782596 + (TA)n Simple_repeat Simple_repeat 1 289 0 407 169 32 16 chr12 88500552 88500676 -55781813 + GA-rich Low_complexity Low_complexity 3 128 0 362 153 0 0 chr12 88501106 88501165 -55781324 - MIR SINE MIR -108 154 96 190 316 110 42 chr12 88501475 88501712 -55780777 + L2 LINE L2 1180 1432 -1882 736 336 122 33 chr12 88502135 88503221 -55779268 + L2 LINE L2 2127 3304 -9 508 316 151 0 chr12 88503388 88503594 -55778895 + MIR SINE MIR 26 262 0 2037 156 7 0 chr12 88503623 88503931 -55778558 - AluSx SINE Alu -2 310 1 735 331 93 43 chr12 88506222 88506940 -55775549 + L2 LINE L2 2308 3059 -213 407 147 22 0 chr12 88507068 88507155 -55775334 + L1MA5 LINE L1 5965 6069 -231 3873 150 29 20 chr12 88507625 88508340 -55774149 + MER50 LTR ERV1 1 722 -12 4324 145 26 3 chr12 88508377 88509074 -55773415 + MER50-int LTR ERV1 2 714 -6491 691 186 58 74 chr12 88509073 88509385 -55773104 + pTR5 LTR ERV1 741 1047 -1391 * 29 47 0 0 chr12 88509413 88509456 -55773033 + GC_rich Low_complexity Low_complexity 1 43 0 252 217 14 35 chr12 88509542 88509622 -55772867 + (CCGCG)n Simple_repeat Simple_repeat 3 80 -62 182 62 31 0 chr12 88509622 88509654 -55772835 + (CCCG)n Simple_repeat Simple_repeat 4 36 0 252 217 14 35 chr12 88509654 88509716 -55772773 + (CCGCG)n Simple_repeat Simple_repeat 80 142 0 214 143 16 63 chr12 88509707 88509770 -55772719 + C-rich Low_complexity Low_complexity 3 62 0 * 189 107 0 0 chr12 88510087 88510115 -55772374 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 1051 170 140 85 chr12 88510140 88510411 -55772078 - AluJo SINE Alu -8 304 19 2117 104 63 36 chr12 88510723 88511088 -55771401 + THE1C LTR MaLR 1 375 0 1899 142 58 21 chr12 88511342 88511667 -55770822 - MER1B DNA MER1_type 0 337 1 1755 172 52 6 chr12 88512729 88513077 -55769412 + MLT1A1 LTR MaLR 2 365 0 190 358 147 0 chr12 88513239 88513334 -55769155 + L2 LINE L2 3202 3310 -3 22 35 0 0 chr12 88514028 88514057 -55768432 + AT_rich Low_complexity Low_complexity 1 29 0 531 141 0 0 chr12 88515615 88515707 -55766782 + (TTC)n Simple_repeat Simple_repeat 1 92 0 195 146 0 0 chr12 88515720 88515761 -55766728 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 781 178 86 154 chr12 88517002 88517468 -55765021 - Zaphod DNA AcHobo -3 4028 3595 * 1004 174 245 21 chr12 88517466 88517886 -55764603 - Zaphod DNA AcHobo -3041 990 477 801 195 10 35 chr12 88519833 88520033 -55762456 - L1MB1 LINE L1 0 6168 5974 328 315 27 0 chr12 88521005 88521116 -55761373 + MLT1K LTR MaLR 137 250 -338 1796 148 102 0 chr12 88521223 88521506 -55760983 + AluSx SINE Alu 1 312 0 296 226 22 95 chr12 88521564 88521701 -55760788 + MLT1K LTR MaLR 460 586 -2 199 297 68 0 chr12 88521725 88521799 -55760690 + L2 LINE L2 3194 3272 0 268 240 226 53 chr12 88522119 88522327 -55760162 + MIR SINE MIR 19 262 0 274 216 81 14 chr12 88524740 88524814 -55757675 + L2 LINE L2 3235 3313 0 181 289 60 107 chr12 88525900 88526049 -55756440 + MIR SINE MIR 110 251 -11 696 199 37 59 chr12 88527205 88527351 -55755138 + L1M4 LINE L1 4682 4821 -1325 264 30 0 0 chr12 88527351 88527384 -55755105 + (CA)n Simple_repeat Simple_repeat 2 34 0 696 199 37 59 chr12 88527384 88527508 -55754981 + L1M4 LINE L1 4821 4946 -1200 27 62 0 0 chr12 88527948 88527996 -55754493 + AT_rich Low_complexity Low_complexity 1 48 0 2202 91 35 0 chr12 88528260 88528546 -55753943 - AluSg SINE Alu -14 296 1 857 293 16 8 chr12 88528903 88529145 -55753344 + MIR SINE MIR 12 255 -7 816 170 121 0 chr12 88529315 88529497 -55752992 - MER3 DNA MER1_type -5 204 1 1747 128 0 4 chr12 88531390 88531640 -55750849 + AluSx SINE Alu 1 249 -63 228 135 0 0 chr12 88533272 88533309 -55749180 + (TA)n Simple_repeat Simple_repeat 1 37 0 2071 130 30 3 chr12 88533389 88533690 -55748799 + AluSc SINE Alu 1 309 0 184 281 35 0 chr12 88533701 88533758 -55748731 - MER5A DNA MER1_type -118 71 13 230 258 113 57 chr12 88534629 88534753 -55747736 + MIR SINE MIR 68 198 -64 2784 158 13 23 chr12 88534860 88535384 -55747105 - MER44D DNA MER2_type 0 605 32 576 318 33 25 chr12 88535972 88536037 -55746452 + MIR SINE MIR 9 72 -190 1668 158 65 3 chr12 88536037 88536360 -55746129 - MER2 DNA MER2_type -1 343 1 576 318 33 25 chr12 88536360 88536536 -55745953 + MIR SINE MIR 72 252 -10 2593 108 3 3 chr12 88536985 88537347 -55745142 - THE1B LTR MaLR 0 364 3 2165 92 13 35 chr12 88537685 88538000 -55744489 + AluSp SINE Alu 1 308 -5 1661 173 7 39 chr12 88538862 88538994 -55743495 + AluJo SINE Alu 1 136 -176 1553 165 8 0 chr12 88538994 88539262 -55743227 + AluJb SINE Alu 46 315 0 1661 173 7 39 chr12 88539262 88539435 -55743054 + AluJo SINE Alu 136 297 -15 2309 61 40 3 chr12 88539708 88540004 -55742485 - AluY SINE Alu -4 307 1 21 0 0 0 chr12 88540442 88540463 -55742026 + AT_rich Low_complexity Low_complexity 1 21 0 3309 109 14 2 chr12 88541071 88541559 -55740930 + L1PB1 LINE L1 5658 6151 0 321 335 122 40 chr12 88541951 88542244 -55740245 - L2 LINE L2 -2 3270 2930 2029 121 0 48 chr12 88542244 88542559 -55739930 + AluSx SINE Alu 1 300 -12 321 335 122 40 chr12 88542559 88542692 -55739797 - L2 LINE L2 -342 2930 2809 1694 207 6 6 chr12 88543271 88543624 -55738865 - MLT1A1 LTR MaLR 0 365 13 934 138 13 0 chr12 88544267 88544426 -55738063 + MER58B DNA MER1_type 181 341 0 837 162 0 0 chr12 88546004 88546121 -55736368 + FRAM SINE Alu 36 152 -24 34 0 0 0 chr12 88546130 88546164 -55736325 + AT_rich Low_complexity Low_complexity 1 34 0 * 3166 191 101 0 chr12 88546145 88546835 -55735654 + L1 LINE L1 3600 4359 -1787 574 185 134 17 chr12 88546850 88546969 -55735520 + FLAM_C SINE Alu 1 133 0 6506 94 24 13 chr12 88546969 88548179 -55734310 + L1PA10 LINE L1 4947 6168 0 1065 183 0 17 chr12 88548179 88548350 -55734139 + AluJb SINE Alu 136 305 -7 1355 174 15 34 chr12 88548350 88548553 -55733936 + L1 LINE L1 4367 4563 -1583 2470 137 19 6 chr12 88548553 88548912 -55733577 - THE1B LTR MaLR 0 364 1 1355 174 15 34 chr12 88548912 88549036 -55733453 + L1 LINE L1 4563 4688 -1458 368 170 75 0 chr12 88549176 88549270 -55733219 - THE1B LTR MaLR -263 101 1 511 185 30 44 chr12 88549270 88549405 -55733084 + L1 LINE L1 4562 4694 -1452 1767 176 16 45 chr12 88549405 88549779 -55732710 - MSTB LTR MaLR -5 421 59 948 293 42 7 chr12 88549771 88550078 -55732411 + MLT1F LTR MaLR 135 452 -90 * 197 388 20 0 chr12 88550327 88550425 -55732064 - MIR SINE MIR -64 144 45 397 262 122 67 chr12 88551320 88551484 -55731005 + MER5B DNA MER1_type 1 173 -5 583 283 148 48 chr12 88553419 88553776 -55728713 - L2 LINE L2 -10 3303 2911 2175 132 58 30 chr12 88555487 88555850 -55726639 + THE1C LTR MaLR 1 373 -2 226 353 0 0 chr12 88556006 88556091 -55726398 - MIR SINE MIR -14 248 164 702 226 117 71 chr12 88556131 88556440 -55726049 - MER5C DNA MER1_type -1 323 1 6013 48 1 16 chr12 88558315 88559083 -55723406 - L1PA4 LINE L1 -3 6152 5396 23914 81 15 8 chr12 88559366 88562738 -55719751 + L1P LINE L1 1179 4576 -1570 570 304 62 10 chr12 88563557 88563863 -55718626 - L1ME4a LINE L1 -210 5911 5590 221 213 55 7 chr12 88563940 88564007 -55718482 + MIR SINE MIR 64 131 -77 24 32 0 0 chr12 88564151 88564182 -55718307 + AT_rich Low_complexity Low_complexity 1 31 0 3597 134 29 6 chr12 88564719 88565234 -55717255 + MER1A DNA MER1_type 1 527 0 24 0 0 0 chr12 88565968 88565992 -55716497 + GC_rich Low_complexity Low_complexity 1 24 0 29 60 0 0 chr12 88566043 88566093 -55716396 + GC_rich Low_complexity Low_complexity 1 50 0 26 50 0 0 chr12 88566828 88566868 -55715621 + AT_rich Low_complexity Low_complexity 1 40 0 186 133 0 0 chr12 88567563 88567593 -55714896 + (CATA)n Simple_repeat Simple_repeat 1 30 0 309 255 71 50 chr12 88568733 88568874 -55713615 - L1MCa LINE L1 -4342 2084 1941 289 337 61 0 chr12 88569066 88569164 -55713325 + L2 LINE L2 3210 3313 0 278 276 51 49 chr12 88569329 88569567 -55712922 - L1MC5 LINE L1 -547 7495 7260 * 303 245 65 91 chr12 88569564 88569774 -55712715 - L1MC4a LINE L1 -632 7234 7034 299 127 0 0 chr12 88569822 88569877 -55712612 + (G)n Simple_repeat Simple_repeat 1 55 0 21 43 0 0 chr12 88569877 88569900 -55712589 + GC_rich Low_complexity Low_complexity 1 23 0 206 215 0 31 chr12 88569949 88570014 -55712475 + (CCCCG)n Simple_repeat Simple_repeat 4 66 0 265 278 124 41 chr12 88570674 88570843 -55711646 - L2 LINE L2 -609 2705 2523 717 305 42 17 chr12 88570908 88571144 -55711345 - MIR SINE MIR -1 261 20 208 273 0 0 chr12 88572571 88572626 -55709863 + C-rich Low_complexity Low_complexity 1 55 0 213 94 0 0 chr12 88573394 88573426 -55709063 + (CTGGGG)n Simple_repeat Simple_repeat 3 34 0 332 305 98 18 chr12 88580077 88580241 -55702248 + MLT1K LTR MaLR 42 218 -370 615 250 40 25 chr12 88580297 88580497 -55701992 + MLT1K LTR MaLR 383 585 -3 785 270 68 63 chr12 88580776 88581191 -55701298 + MLT1K LTR MaLR 62 545 -43 2172 125 0 0 chr12 88581191 88581486 -55701003 - AluSc SINE Alu -14 295 1 785 270 68 63 chr12 88581486 88581527 -55700962 + MLT1K LTR MaLR 545 584 -4 16708 158 24 50 chr12 88582102 88582801 -55699688 + L1M1 LINE L1 22 738 -6827 2479 126 16 19 chr12 88582801 88583166 -55699323 + THE1B LTR MaLR 1 364 0 16708 158 24 50 chr12 88583166 88584499 -55697990 + L1M1 LINE L1 738 1946 -5619 2627 133 3 8 chr12 88584499 88584876 -55697613 - THE1C LTR MaLR 0 375 1 16708 158 24 50 chr12 88584876 88585947 -55696542 + L1M1 LINE L1 1946 3044 -4521 1874 144 0 33 chr12 88585947 88586246 -55696243 + L1PB3 LINE L1 5865 6153 -1 440 151 0 70 chr12 88586613 88586699 -55695790 + MADE1 DNA Mariner 1 80 0 362 361 95 0 chr12 88586702 88586860 -55695629 + MIR3 SINE MIR 32 204 -4 480 295 78 10 chr12 88587315 88587508 -55694981 + LTR16A LTR ERVL 240 445 -5 285 271 31 31 chr12 88587560 88587629 -55694860 + HAL1b LINE L1 1196 1267 -81 2408 69 0 7 chr12 88587629 88587933 -55694556 - AluY SINE Alu -9 302 1 285 271 31 31 chr12 88587933 88587992 -55694497 + HAL1b LINE L1 1266 1324 -24 27 62 0 0 chr12 88589611 88589659 -55692830 + GC_rich Low_complexity Low_complexity 1 48 0 311 260 58 29 chr12 88590627 88590731 -55691758 - L2 LINE L2 0 3313 3207 25 31 0 0 chr12 88591292 88591324 -55691165 + AT_rich Low_complexity Low_complexity 1 32 0 583 278 64 81 chr12 88591484 88591829 -55690660 - LTR33A LTR ERVL -176 347 9 5219 156 57 7 chr12 88591874 88592785 -55689704 + L1M3f LINE L1 10 966 -4362 5567 94 1 3 chr12 88592799 88593533 -55688956 - L1PA7 LINE L1 0 6154 5422 189 0 0 0 chr12 88593546 88593567 -55688922 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 8436 27 1 0 chr12 88593578 88595299 -55687190 - L1PA4 LINE L1 -3 6152 4451 29 0 0 0 chr12 88595730 88595759 -55686730 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr12 88595783 88595825 -55686664 + AT_rich Low_complexity Low_complexity 1 42 0 3327 165 7 3 chr12 88596302 88596982 -55685507 - MER50-int LTR ERV1 -1085 3795 1003 4577 133 13 21 chr12 88596993 88598030 -55684459 - MER50-int LTR ERV1 -5368 1837 729 3895 89 39 156 chr12 88598062 88598851 -55683638 - LTR12 LTR ERV1 0 1800 31 1651 224 27 63 chr12 88599275 88599797 -55682692 - MLT1D LTR MaLR 0 505 3 496 300 32 21 chr12 88600206 88600396 -55682093 + LTR33 LTR ERVL 26 217 -304 1994 163 20 3 chr12 88600551 88600907 -55681582 - MER50-int LTR ERV1 -3190 4015 3654 1335 213 55 24 chr12 88601454 88601782 -55680707 - MER58B DNA MER1_type 0 341 4 214 370 0 0 chr12 88601976 88602057 -55680432 + C-rich Low_complexity Low_complexity 1 81 0 244 306 12 31 chr12 88602285 88602445 -55680044 + GA-rich Low_complexity Low_complexity 3 159 0 133 14 0 0 chr12 88603234 88603376 -55679113 + GC_rich Low_complexity Low_complexity 1 142 0 226 81 71 40 chr12 88603376 88603475 -55679014 + (CCGCG)n Simple_repeat Simple_repeat 3 104 0 874 268 83 18 chr12 88603790 88604126 -55678363 + MLT1C LTR MaLR 110 467 0 1159 138 0 0 chr12 88655410 88655584 -55626905 + AluSg/x SINE Alu 106 279 -31 2324 74 0 3 chr12 88656157 88656454 -55626035 + AluY SINE Alu 1 296 -15 2524 65 7 3 chr12 88656583 88656890 -55625599 + AluSx SINE Alu 1 308 -4 198 0 0 0 chr12 88656890 88656912 -55625577 + (TA)n Simple_repeat Simple_repeat 2 23 0 2200 95 3 20 chr12 88657720 88658016 -55624473 + AluSx SINE Alu 7 297 -15 4376 44 0 2 chr12 88659058 88659585 -55622904 + L1PA6 LINE L1 5618 6143 -11 186 367 33 17 chr12 88659820 88659940 -55622549 + L2 LINE L2 2844 2965 -349 207 139 0 0 chr12 88660209 88660245 -55622244 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 387 288 159 4 chr12 88661328 88661554 -55620935 - MLT1K LTR MaLR -2 586 326 187 386 31 43 chr12 88661837 88662000 -55620489 - MIR SINE MIR -46 216 56 2306 89 0 3 chr12 88662421 88662714 -55619775 + AluSc SINE Alu 1 292 -17 502 232 55 39 chr12 88662768 88662787 -55619702 - MIR SINE MIR 0 262 245 2159 88 49 0 chr12 88662787 88663071 -55619418 + AluSx SINE Alu 3 300 -12 502 232 55 39 chr12 88663071 88663232 -55619257 - MIR SINE MIR -17 245 79 26 0 0 0 chr12 88663365 88663391 -55619098 + AT_rich Low_complexity Low_complexity 1 26 0 1316 139 4 37 chr12 88663739 88663984 -55618505 - AluY SINE Alu -12 299 63 239 193 0 18 chr12 88663999 88664056 -55618433 + T-rich Low_complexity Low_complexity 6 61 0 189 196 0 0 chr12 88664070 88664121 -55618368 + T-rich Low_complexity Low_complexity 1 51 0 381 277 0 0 chr12 88664517 88664618 -55617871 + MER94 DNA DNA 1 101 -33 27 0 0 0 chr12 88665623 88665650 -55616839 + AT_rich Low_complexity Low_complexity 1 27 0 2114 118 0 38 chr12 88665785 88665919 -55616570 + AluY SINE Alu 1 139 -172 2709 29 0 0 chr12 88665919 88666230 -55616259 + AluYa5 SINE Alu 1 311 0 2114 118 0 38 chr12 88666230 88666408 -55616081 + AluY SINE Alu 139 301 -10 234 349 23 12 chr12 88666419 88666505 -55615984 - L2 LINE L2 -254 3018 2932 2236 103 3 3 chr12 88666968 88667260 -55615229 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr12 88668751 88668772 -55613717 + (T)n Simple_repeat Simple_repeat 1 21 0 195 217 0 0 chr12 88669010 88669070 -55613419 + T-rich Low_complexity Low_complexity 1 60 0 279 0 0 0 chr12 88670642 88670673 -55611816 + (TG)n Simple_repeat Simple_repeat 2 32 0 214 178 0 0 chr12 88672228 88672273 -55610216 + T-rich Low_complexity Low_complexity 3 47 0 2053 111 0 27 chr12 88674978 88675295 -55607194 + AluSx SINE Alu 1 312 0 592 223 8 0 chr12 88676235 88676356 -55606133 + FLAM_C SINE Alu 1 122 -11 226 279 71 84 chr12 88677125 88677279 -55605210 - MIR SINE MIR -11 251 100 1022 218 55 0 chr12 88677284 88677486 -55605003 + AluJo SINE Alu 3 215 -97 2416 87 10 3 chr12 88677897 88678208 -55604281 + AluSq SINE Alu 1 313 0 448 250 181 0 chr12 88679003 88679163 -55603326 + MER5A DNA MER1_type 1 189 0 880 182 47 0 chr12 88679625 88679795 -55602694 - L1MB5 LINE L1 -9 6165 5988 243 0 0 0 chr12 88679805 88679832 -55602657 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1596 176 18 32 chr12 88679837 88680121 -55602368 - AluJo SINE Alu -32 280 1 1400 89 5 5 chr12 88681328 88681518 -55600971 + AluSq SINE Alu 110 299 -14 1404 168 65 14 chr12 88682158 88682450 -55600039 - MLT1C LTR MaLR -1 466 160 395 281 166 28 chr12 88682729 88682946 -55599543 + MIR SINE MIR 4 250 -12 4696 127 144 80 chr12 88683852 88685204 -55597285 - pTR5 LTR ERV1 -133 1798 57 307 352 75 19 chr12 88685583 88685796 -55596693 - L2 LINE L2 -674 2640 2416 608 225 18 24 chr12 88685969 88686138 -55596351 + MER50 LTR ERV1 1 168 -566 2450 183 65 11 chr12 88686207 88686733 -55595756 + MER50 LTR ERV1 173 726 -8 4743 51 5 0 chr12 88687571 88688159 -55594330 - LTR10C LTR ERV1 0 591 1 2475 75 7 0 chr12 88688190 88688497 -55593992 - AluY SINE Alu -2 309 1 353 335 28 84 chr12 88688573 88688788 -55593701 - L2 LINE L2 -1 3271 3069 1851 169 77 29 chr12 88689183 88689597 -55592892 - Tigger2a DNA MER2_type 0 434 1 36 62 0 0 chr12 88691762 88691826 -55590663 + AT_rich Low_complexity Low_complexity 1 64 0 226 231 13 0 chr12 88693089 88693167 -55589322 + (TTA)n Simple_repeat Simple_repeat 1 79 0 188 215 0 108 chr12 88693296 88693329 -55589160 - L2 LINE L2 0 3313 3289 1960 126 42 55 chr12 88693329 88693640 -55588849 + THE1C LTR MaLR 1 308 -67 2160 87 30 7 chr12 88693640 88693938 -55588551 + AluSx SINE Alu 1 305 -7 1960 126 42 55 chr12 88693938 88694006 -55588483 + THE1C LTR MaLR 308 375 0 188 215 0 108 chr12 88694006 88694037 -55588452 - L2 LINE L2 -24 3289 3256 2316 90 3 3 chr12 88694499 88694798 -55587691 - AluSx SINE Alu -2 310 12 716 325 154 21 chr12 88695863 88696349 -55586140 - L3 LINE CR1 -79 1498 948 314 214 57 0 chr12 88696502 88696572 -55585917 - L2 LINE L2 -9 3263 3190 613 299 42 23 chr12 88696669 88696886 -55585603 - MIR SINE MIR -35 227 7 319 284 77 31 chr12 88697419 88697613 -55584876 - L2 LINE L2 -877 2437 2235 761 107 0 38 chr12 88697841 88697972 -55584517 - AluY SINE Alu 0 311 186 30 0 0 0 chr12 88697974 88698004 -55584485 + AT_rich Low_complexity Low_complexity 1 30 0 2156 78 0 7 chr12 88698004 88698285 -55584204 - AluY SINE Alu -14 297 19 27 0 0 0 chr12 88698335 88698362 -55584127 + AT_rich Low_complexity Low_complexity 1 27 0 306 340 21 0 chr12 88699380 88699477 -55583012 + L3 LINE CR1 1373 1471 -106 2402 89 0 3 chr12 88699646 88699960 -55582529 - AluSq SINE Alu 0 313 1 22 0 0 0 chr12 88700895 88700917 -55581572 + AT_rich Low_complexity Low_complexity 1 22 0 411 363 41 12 chr12 88701827 88701998 -55580491 - L3 LINE CR1 -80 1497 1322 353 341 61 0 chr12 88702016 88702148 -55580341 - L3 LINE CR1 -363 1214 1075 2374 96 0 13 chr12 88702185 88702497 -55579992 - AluSq SINE Alu -5 308 1 2209 136 57 30 chr12 88702516 88703030 -55579459 - MLT2A2 LTR ERVL 0 554 1 2203 115 3 13 chr12 88703053 88703365 -55579124 - AluSx SINE Alu -3 309 1 274 292 108 54 chr12 88703366 88703551 -55578938 - L3 LINE CR1 -564 1013 819 1440 207 70 0 chr12 88703579 88703849 -55578640 - AluJo SINE Alu -23 289 1 210 313 0 0 chr12 88703876 88703940 -55578549 - L3 LINE CR1 -769 808 745 339 152 91 0 chr12 88704155 88704221 -55578268 - MIR SINE MIR -94 168 97 196 200 44 22 chr12 88704250 88704295 -55578194 - L2 LINE L2 -4 3268 3223 2002 85 0 65 chr12 88704304 88704598 -55577891 + AluSg1 SINE Alu 24 298 -11 2902 138 46 2 chr12 88704655 88705175 -55577314 + L1MC1 LINE L1 5791 6333 0 21 0 0 0 chr12 88706083 88706104 -55576385 + AT_rich Low_complexity Low_complexity 1 21 0 2222 120 0 0 chr12 88706584 88706884 -55575605 - AluSx SINE Alu -12 300 1 224 250 0 18 chr12 88707121 88707177 -55575312 + L2 LINE L2 3214 3268 -4 2194 128 0 0 chr12 88707497 88707801 -55574688 + AluSx SINE Alu 1 304 -8 240 59 0 0 chr12 88708545 88708579 -55573910 + (CA)n Simple_repeat Simple_repeat 1 34 0 200 379 1 0 chr12 88710029 88710115 -55572374 - MIR SINE MIR -72 136 50 781 230 21 16 chr12 88710335 88710569 -55571920 - AluJb SINE Alu 0 354 120 2295 119 0 0 chr12 88710571 88710883 -55571606 - AluSx SINE Alu 0 312 1 1826 151 53 10 chr12 88710891 88711190 -55571299 - AluSx SINE Alu 0 312 1 21 0 0 0 chr12 88711349 88711370 -55571119 + AT_rich Low_complexity Low_complexity 1 21 0 183 219 0 0 chr12 88712261 88712293 -55570196 - MIR SINE MIR -174 88 57 296 326 95 45 chr12 88712606 88712988 -55569501 - L2 LINE L2 -168 3104 2709 227 264 0 0 chr12 88714351 88714404 -55568085 + L2 LINE L2 3257 3309 -4 180 0 0 0 chr12 88714555 88714575 -55567914 + (TGG)n Simple_repeat Simple_repeat 1 20 0 262 321 37 0 chr12 88717045 88717154 -55565335 - MER113 DNA MER1_type? -408 113 1 382 319 109 52 chr12 88717263 88717592 -55564897 - L3 LINE CR1 -109 1468 1121 1738 161 56 3 chr12 88717761 88718047 -55564442 - AluSx SINE Alu -11 301 1 318 309 96 40 chr12 88718238 88718487 -55564002 - L3 LINE CR1 -607 970 708 2423 195 8 20 chr12 88719115 88719612 -55562877 + MLT1D LTR MaLR 15 505 0 771 196 0 0 chr12 88720211 88720344 -55562145 + FLAM_A SINE Alu 1 133 0 183 333 13 0 chr12 88723024 88723102 -55559387 - MIR SINE MIR -12 250 172 186 103 0 0 chr12 88723648 88723677 -55558812 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2094 137 0 0 chr12 88723679 88723964 -55558525 - AluSx SINE Alu -27 285 1 232 337 31 0 chr12 88724997 88725095 -55557394 + MIR SINE MIR 38 138 -70 1875 151 16 47 chr12 88725483 88725866 -55556623 - MLT1B LTR MaLR -2 388 18 1989 93 0 0 chr12 88726024 88726270 -55556219 - AluSq SINE Alu -66 247 2 22 35 0 0 chr12 88727113 88727142 -55555347 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr12 88727397 88727420 -55555069 + (T)n Simple_repeat Simple_repeat 1 23 0 1986 155 6 6 chr12 88727507 88727843 -55554646 + MER1A DNA MER1_type 1 336 -193 2088 71 3 61 chr12 88727984 88728281 -55554208 + AluY SINE Alu 23 302 -9 623 250 31 62 chr12 88729235 88729477 -55553012 - MIR SINE MIR -26 236 4 342 197 28 122 chr12 88730004 88730165 -55552324 - MSTC LTR MaLR -214 151 1 2335 91 0 31 chr12 88730319 88730638 -55551851 - AluSx SINE Alu -3 309 1 253 322 151 7 chr12 88730764 88730916 -55551573 - MIR SINE MIR -14 248 75 257 322 0 8 chr12 88731911 88732077 -55550412 - L1ME3A LINE L1 -219 5951 5787 * 293 276 193 14 chr12 88732075 88732220 -55550269 + L1ME LINE L1 5481 5651 -511 202 266 53 64 chr12 88732666 88732760 -55549729 + MIR SINE MIR 103 195 -67 2225 104 7 10 chr12 88733430 88733739 -55548750 - AluSx SINE Alu -4 308 1 1843 144 14 14 chr12 88735331 88735623 -55546866 - AluJo SINE Alu -16 296 5 1386 94 0 69 chr12 88735918 88736146 -55546343 + AluSc SINE Alu 92 305 0 218 339 0 0 chr12 88736146 88736205 -55546284 - L2 LINE L2 -841 2473 2415 2129 130 3 0 chr12 88737195 88737537 -55544952 - AluSp SINE Alu 0 313 1 229 344 0 0 chr12 88737596 88737657 -55544832 + L2 LINE L2 3251 3311 -2 1436 138 52 55 chr12 88737690 88738037 -55544452 + MER4A LTR ERV1 1 346 -318 534 89 236 32 chr12 88738176 88738299 -55544190 + MER4C LTR ERV1 300 447 -18 2171 128 0 0 chr12 88738490 88738780 -55543709 + AluSx SINE Alu 1 290 -22 345 231 161 16 chr12 88738887 88739078 -55543411 - L1 LINE L1 -2324 3822 3609 390 157 3 9 chr12 88739897 88739981 -55542508 + MSTA LTR MaLR 347 428 0 2239 103 7 7 chr12 88740659 88740961 -55541528 + AluSg SINE Alu 1 302 -8 511 124 41 0 chr12 88740970 88741067 -55541422 + GA-rich Low_complexity Low_complexity 2 102 0 2143 113 3 0 chr12 88741689 88741980 -55540509 - AluSx SINE Alu -20 292 1 478 239 0 0 chr12 88742725 88742834 -55539655 - FLAM_A SINE Alu -11 131 23 2332 107 0 0 chr12 88742998 88743296 -55539193 + AluSg SINE Alu 2 299 -11 237 208 0 0 chr12 88743878 88743930 -55538559 + (TAGG)n Simple_repeat Simple_repeat 1 52 0 572 242 95 0 chr12 88744457 88744647 -55537842 - MER3 DNA MER1_type 0 209 2 2390 90 0 0 chr12 88745529 88745829 -55536660 - AluSg SINE Alu -10 300 1 251 156 0 0 chr12 88746208 88746253 -55536236 + L1MC4 LINE L1 6659 6703 -1339 306 227 0 0 chr12 88746266 88746341 -55536148 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 239 188 0 0 chr12 88746345 88746393 -55536096 - MLT1J LTR MaLR -42 469 422 2105 124 7 0 chr12 88746411 88746701 -55535788 + AluSx SINE Alu 3 294 -18 278 271 105 80 chr12 88746747 88747072 -55535417 - MLT1J LTR MaLR -178 333 1 1688 189 7 4 chr12 88747239 88747520 -55534969 + AluJo SINE Alu 1 282 -30 1238 181 56 59 chr12 88748559 88748846 -55533643 + AluJo SINE Alu 1 286 -26 1415 78 0 34 chr12 88748957 88749161 -55533328 - AluY SINE Alu -114 197 1 2246 116 0 0 chr12 88749855 88750157 -55532332 - AluSx SINE Alu -10 302 1 24 53 0 0 chr12 88750692 88750730 -55531759 + AT_rich Low_complexity Low_complexity 1 38 0 1024 247 116 86 chr12 88750964 88751430 -55531059 - MLT1J LTR MaLR -12 499 20 435 320 35 29 chr12 88752737 88752909 -55529580 + MIR SINE MIR 56 228 -34 454 221 179 29 chr12 88753164 88753304 -55529185 + MER5A DNA MER1_type 9 169 -20 249 161 18 54 chr12 88753371 88753427 -55529062 + MER5A DNA MER1_type 41 94 -95 2464 71 0 0 chr12 88755821 88756117 -55526372 - AluSc SINE Alu -11 298 3 557 151 9 0 chr12 88756285 88756391 -55526098 - MER53 DNA DNA -70 119 13 2112 108 0 0 chr12 88756722 88757025 -55525464 - AluSg SINE Alu 0 303 1 234 294 157 7 chr12 88757041 88757194 -55525295 - MIR3 SINE MIR -32 176 1 190 353 83 23 chr12 88757599 88757732 -55524757 + L3b LINE CR1 1375 1515 -68 205 350 125 25 chr12 88760678 88760838 -55521651 - L2 LINE L2 -160 3112 2937 2237 82 13 3 chr12 88761247 88761550 -55520939 - AluSc SINE Alu -3 306 1 1859 103 7 48 chr12 88761816 88762107 -55520382 + AluSq SINE Alu 1 279 -34 8250 37 0 2 chr12 88762107 88763136 -55519353 + L1P LINE L1 2200 3226 -2920 386 263 30 30 chr12 88764827 88764963 -55517526 + MIR SINE MIR 20 154 -61 180 0 0 0 chr12 88765726 88765746 -55516743 + (TTG)n Simple_repeat Simple_repeat 2 21 0 250 282 47 24 chr12 88766212 88766297 -55516192 + MER5B DNA MER1_type 92 178 0 1976 162 3 0 chr12 88766442 88766751 -55515738 + AluJb SINE Alu 1 310 -2 439 255 166 51 chr12 88767956 88768191 -55514298 - MIR SINE MIR 0 262 1 351 0 0 0 chr12 88768566 88768605 -55513884 + (TG)n Simple_repeat Simple_repeat 2 40 0 355 318 9 27 chr12 88768713 88768823 -55513666 - L2 LINE L2 -18 3295 3188 740 209 73 36 chr12 88769701 88769921 -55512568 - MER46C DNA MER2_type -16 322 95 456 187 8 32 chr12 88769924 88770047 -55512442 - L1MB8 LINE L1 -1 6177 6058 333 0 0 0 chr12 88770098 88770135 -55512354 + (TG)n Simple_repeat Simple_repeat 2 38 0 363 283 47 29 chr12 88771089 88771217 -55511272 + MIR SINE MIR 5 136 -72 21 0 0 0 chr12 88771264 88771285 -55511204 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 88771779 88771810 -55510679 + AT_rich Low_complexity Low_complexity 1 31 0 438 208 21 0 chr12 88771869 88771965 -55510524 - MER58B DNA MER1_type 0 341 244 22 0 0 0 chr12 88772225 88772247 -55510242 + AT_rich Low_complexity Low_complexity 1 22 0 228 67 0 0 chr12 88772784 88772814 -55509675 + (A)n Simple_repeat Simple_repeat 1 30 0 914 156 0 6 chr12 88772870 88773049 -55509440 + (TGG)n Simple_repeat Simple_repeat 1 178 0 198 270 184 43 chr12 88773684 88773847 -55508642 + MIR SINE MIR 67 252 -10 222 229 57 0 chr12 88774554 88774624 -55507865 + CT-rich Low_complexity Low_complexity 5 78 0 21 36 0 0 chr12 88774710 88774738 -55507751 + AT_rich Low_complexity Low_complexity 1 28 0 271 234 16 0 chr12 88775066 88775130 -55507359 + (TTCA)n Simple_repeat Simple_repeat 4 68 0 344 257 9 48 chr12 88775140 88775245 -55507244 - L2 LINE L2 -28 3285 3185 570 202 10 0 chr12 88775748 88775852 -55506637 + FLAM_A SINE Alu 1 105 -37 2565 248 16 45 chr12 88775994 88776878 -55505611 - L1PA13 LINE L1 -4412 2385 1500 297 0 0 0 chr12 88776937 88776970 -55505519 + (T)n Simple_repeat Simple_repeat 1 33 0 2168 94 4 0 chr12 88777055 88777362 -55505127 + AluSp SINE Alu 11 318 0 699 156 0 0 chr12 88777706 88777815 -55504674 - FLAM_A SINE Alu -14 128 20 2366 103 0 3 chr12 88778244 88778554 -55503935 + AluSc SINE Alu 1 309 0 615 286 168 43 chr12 88779019 88779550 -55502939 - L2 LINE L2 -667 2647 2051 1808 142 3 53 chr12 88779947 88780265 -55502224 - AluSx SINE Alu -10 302 1 2079 132 3 0 chr12 88782676 88782972 -55499517 - AluSx SINE Alu -15 297 1 918 267 123 40 chr12 88783603 88784052 -55498437 - MLT1J LTR MaLR -16 495 10 361 272 44 9 chr12 88784387 88784501 -55497988 + L2 LINE L2 2369 2486 -828 250 149 64 0 chr12 88784805 88784852 -55497637 - MER5B DNA MER1_type -128 50 1 568 314 155 26 chr12 88785107 88785630 -55496859 + L1ME3 LINE L1 5255 5837 -325 1667 137 44 31 chr12 88786134 88786427 -55496062 - AluSx SINE Alu -15 297 1 376 259 184 7 chr12 88786428 88786575 -55495914 - MIR SINE MIR -37 225 53 1665 190 3 3 chr12 88787989 88788278 -55494211 - AluJo SINE Alu -23 289 1 590 289 37 0 chr12 88788595 88788782 -55493707 - MLT1K LTR MaLR -17 571 378 284 268 0 14 chr12 88789338 88789409 -55493080 + Charlie8 DNA MER1_type 3 72 -2345 28 29 0 0 chr12 88789628 88789663 -55492826 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 88790389 88790410 -55492079 + AT_rich Low_complexity Low_complexity 1 21 0 324 294 78 10 chr12 88791181 88791283 -55491206 - MIR SINE MIR -130 132 24 5416 56 17 4 chr12 88791298 88792013 -55490476 - L1PA7 LINE L1 0 6154 5431 424 278 102 58 chr12 88793389 88793960 -55488529 + L1M2 LINE L1 1670 4096 -2752 2927 154 28 9 chr12 88794004 88794567 -55487922 - L1MC3 LINE L1 -8 7777 7204 2169 111 26 61 chr12 88794569 88794946 -55487543 - THE1B LTR MaLR 0 364 1 2862 106 13 45 chr12 88794946 88795253 -55487236 - THE1B-int LTR MaLR 0 1580 1292 2144 110 0 3 chr12 88795253 88795545 -55486944 - AluY SINE Alu -20 291 1 2862 106 13 45 chr12 88795545 88795707 -55486782 - THE1B-int LTR MaLR -288 1292 1126 821 139 0 7 chr12 88796277 88796428 -55486061 + (CCA)n Simple_repeat Simple_repeat 3 152 0 998 139 0 6 chr12 88796444 88796624 -55485865 + (CCA)n Simple_repeat Simple_repeat 1 179 0 228 67 0 0 chr12 88796695 88796725 -55485764 + (T)n Simple_repeat Simple_repeat 1 30 0 393 75 0 0 chr12 88797238 88797291 -55485198 + (TA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr12 88797292 88797314 -55485175 + AT_rich Low_complexity Low_complexity 1 22 0 438 208 21 0 chr12 88797574 88797670 -55484819 + MER58B DNA MER1_type 244 341 0 24 32 0 0 chr12 88797729 88797760 -55484729 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 88798254 88798275 -55484214 + AT_rich Low_complexity Low_complexity 1 21 0 728 189 194 14 chr12 88798554 88798651 -55483838 + AluSg1 SINE Alu 38 116 -193 1536 111 0 23 chr12 88798651 88798868 -55483621 + AluSg/x SINE Alu 86 297 -15 728 189 194 14 chr12 88798868 88798992 -55483497 + AluSg1 SINE Alu 116 299 -10 887 341 46 28 chr12 88799429 88799931 -55482558 - L1PA13 LINE L1 -6195 592 82 24 0 0 0 chr12 88800473 88800497 -55481992 + GC_rich Low_complexity Low_complexity 1 24 0 219 69 0 0 chr12 88800498 88800527 -55481962 + (CA)n Simple_repeat Simple_repeat 2 30 0 1116 146 0 2 chr12 88800532 88800781 -55481708 + (TA)n Simple_repeat Simple_repeat 1 429 0 805 236 17 11 chr12 88802506 88802684 -55479805 - MER5A DNA MER1_type -7 182 4 843 226 19 27 chr12 88802796 88803053 -55479436 - MER50 LTR ERV1 -30 704 450 335 70 0 0 chr12 88803240 88803283 -55479206 + (TG)n Simple_repeat Simple_repeat 1 43 0 2327 54 0 7 chr12 88804269 88804564 -55477925 + AluYb8 SINE Alu 1 293 -25 633 258 42 6 chr12 88804940 88805107 -55477382 + MIR SINE MIR 39 211 -51 360 0 0 0 chr12 88805144 88805184 -55477305 + (TTA)n Simple_repeat Simple_repeat 2 41 0 255 250 16 0 chr12 88805910 88805974 -55476515 + (TTCA)n Simple_repeat Simple_repeat 4 68 0 337 262 9 47 chr12 88805984 88806091 -55476398 - L2 LINE L2 -28 3285 3183 740 197 0 0 chr12 88806586 88806713 -55475776 + FLAM_A SINE Alu 3 129 -4 280 259 98 18 chr12 88806778 88806890 -55475599 + MIR3 SINE MIR 54 174 -34 2031 130 51 0 chr12 88807103 88807418 -55475071 - MER1B DNA MER1_type -2 335 5 257 365 12 75 chr12 88807421 88807662 -55474827 + MIR SINE MIR 16 241 -21 22 0 0 0 chr12 88808700 88808722 -55473767 + AT_rich Low_complexity Low_complexity 1 22 0 2814 7 0 0 chr12 88809821 88810125 -55472364 - AluYa5 SINE Alu -7 304 1 219 288 0 55 chr12 88810431 88810504 -55471985 + L2 LINE L2 1198 1266 -2048 2169 106 0 0 chr12 88810626 88810909 -55471580 + AluSg SINE Alu 25 307 -3 3393 150 93 127 chr12 88812441 88812716 -55469773 - L1MC3 LINE L1 -11 7774 7491 1800 166 0 29 chr12 88812716 88813029 -55469460 - AluJb SINE Alu -8 304 1 3393 150 93 127 chr12 88813029 88813180 -55469309 - L1MC3 LINE L1 -294 7491 7336 1574 196 9 25 chr12 88813180 88813497 -55468992 - AluJb SINE Alu 0 312 1 3393 150 93 127 chr12 88813497 88813699 -55468790 - L1MC3 LINE L1 -449 7336 7129 255 264 14 0 chr12 88813699 88813771 -55468718 - MLT1F1 LTR MaLR -456 111 39 3393 150 93 127 chr12 88813771 88814147 -55468342 - L1MC3 LINE L1 -656 7129 6734 2221 102 3 0 chr12 88815622 88815939 -55466550 + AluSp SINE Alu 1 318 0 699 156 0 0 chr12 88816283 88816392 -55466097 - FLAM_A SINE Alu -14 128 20 2056 112 35 0 chr12 88816821 88817108 -55465381 + AluSg SINE Alu 1 297 -13 549 299 156 34 chr12 88817592 88818150 -55464339 - L1MD3 LINE L1 -1988 5820 5255 250 149 64 0 chr12 88818405 88818452 -55464037 + MER5B DNA MER1_type 1 50 -128 204 289 0 48 chr12 88818574 88818657 -55463832 + L2 LINE L2 3192 3270 -43 2227 90 3 0 chr12 88819142 88819432 -55463057 - AluSp SINE Alu -22 291 1 22 0 0 0 chr12 88819438 88819460 -55463029 + AT_rich Low_complexity Low_complexity 1 22 0 445 105 23 23 chr12 88819512 88819598 -55462891 - L1PA11 LINE L1 0 6174 6089 1088 180 90 0 chr12 88819709 88819909 -55462580 + AluJb SINE Alu 84 301 -11 2366 103 0 3 chr12 88820914 88821224 -55461265 + AluSc SINE Alu 1 309 0 615 286 168 43 chr12 88821694 88822225 -55460264 - L2 LINE L2 -667 2647 2051 1802 141 3 56 chr12 88822622 88822941 -55459548 - AluSx SINE Alu -10 302 1 2057 135 3 0 chr12 88825353 88825649 -55456840 - AluSx SINE Alu -15 297 1 1054 262 115 38 chr12 88826282 88826733 -55455756 - MLT1J LTR MaLR -16 495 10 712 267 7 96 chr12 88827068 88827338 -55455151 + L2 LINE L2 2369 2614 -700 514 154 3 76 chr12 88827366 88827703 -55454786 + (TA)n Simple_repeat Simple_repeat 1 312 0 353 259 0 78 chr12 88827715 88827908 -55454581 + (TATG)n Simple_repeat Simple_repeat 3 180 0 443 236 11 57 chr12 88827918 88828646 -55453843 + (TA)n Simple_repeat Simple_repeat 1 694 0 403 249 0 78 chr12 88828170 88828363 -55454126 + (TATG)n Simple_repeat Simple_repeat 3 180 0 438 138 0 82 chr12 88828684 88828879 -55453610 + (TA)n Simple_repeat Simple_repeat 1 179 0 2084 107 4 0 chr12 88828905 88829185 -55453304 - AluSg1 SINE Alu -8 301 21 2875 253 72 18 chr12 88829234 88830160 -55452329 - L1MCb LINE L1 -5068 977 2 860 283 14 102 chr12 88830162 88830316 -55452173 + L2 LINE L2 2630 2796 -517 948 193 0 0 chr12 88830316 88830487 -55452002 + L1PA16 LINE L1 5996 6166 0 860 283 14 102 chr12 88830487 88831001 -55451488 + L2 LINE L2 2796 3223 -90 2353 58 10 7 chr12 88831004 88831313 -55451176 - AluY SINE Alu -1 310 1 189 74 0 0 chr12 88832572 88832599 -55449890 + (T)n Simple_repeat Simple_repeat 1 27 0 241 192 19 39 chr12 88832624 88832676 -55449813 + L2 LINE L2 3246 3296 -17 2555 68 0 0 chr12 88833263 88833574 -55448915 + AluSq SINE Alu 1 311 -2 2062 104 0 74 chr12 88833983 88834321 -55448168 + AluSq SINE Alu 1 313 0 2071 117 0 32 chr12 88834783 88835091 -55447398 + AluSg SINE Alu 1 298 -12 1847 113 49 0 chr12 88835433 88835730 -55446759 + AluSg SINE Alu 1 310 0 445 316 168 14 chr12 88835929 88836483 -55446006 - L1M4 LINE L1 -2090 4056 3418 2157 116 0 7 chr12 88836940 88837241 -55445248 - AluSg SINE Alu -11 299 1 3556 145 75 54 chr12 88837881 88838471 -55444018 - LTR1 LTR ERV1 0 785 174 2371 78 0 19 chr12 88838471 88838780 -55443709 - AluY SINE Alu -7 304 2 3556 145 75 54 chr12 88838780 88838947 -55443542 - LTR1 LTR ERV1 -611 174 12 1986 135 3 25 chr12 88839192 88839511 -55442978 - AluSx SINE Alu 0 312 1 1912 162 0 7 chr12 88840257 88840560 -55441929 + AluJb SINE Alu 1 301 -11 1311 196 0 17 chr12 88841400 88841635 -55440854 + MER8 DNA MER2_type 3 233 -6 2443 81 3 0 chr12 88842419 88842726 -55439763 - AluSp SINE Alu -5 308 1 594 222 0 37 chr12 88843514 88843649 -55438840 + FLAM_C SINE Alu 3 132 -11 34 24 0 0 chr12 88844905 88844946 -55437543 + AT_rich Low_complexity Low_complexity 1 41 0 196 278 201 47 chr12 88844993 88845162 -55437327 + MIR SINE MIR 10 204 -58 2205 71 4 4 chr12 88845193 88845502 -55436987 - AluY SINE Alu 0 309 1 1412 167 33 69 chr12 88845505 88845810 -55436679 - AluJb SINE Alu -18 294 1 2281 113 0 0 chr12 88846290 88846316 -55436173 - AluSg SINE Alu -1 309 284 468 51 0 0 chr12 88846316 88846375 -55436114 + (TC)n Simple_repeat Simple_repeat 2 60 0 2281 113 0 0 chr12 88846375 88846657 -55435832 - AluSg SINE Alu -25 285 1 1307 208 77 35 chr12 88846674 88847002 -55435487 - MSTD LTR MaLR -54 334 4 2314 222 117 4 chr12 88847018 88847670 -55434819 - MSTD-int LTR MaLR -15 1720 2 21 36 0 0 chr12 88847754 88847782 -55434707 + AT_rich Low_complexity Low_complexity 1 28 0 327 236 118 12 chr12 88848926 88849059 -55433430 + MIR SINE MIR 114 262 0 27 0 0 0 chr12 88849063 88849090 -55433399 + AT_rich Low_complexity Low_complexity 1 27 0 1595 153 14 47 chr12 88849417 88849692 -55432797 + AluJo SINE Alu 1 266 -46 182 218 0 18 chr12 88850078 88850133 -55432356 + T-rich Low_complexity Low_complexity 1 54 0 470 291 62 29 chr12 88850656 88851251 -55431238 - L1ME LINE L1 -527 5594 4978 409 255 0 9 chr12 88851347 88851453 -55431036 - L1ME LINE L1 -1545 4601 4497 949 214 91 23 chr12 88851707 88852121 -55430368 - MER90 LTR ERV1 0 614 66 752 307 121 42 chr12 88852281 88852990 -55429499 + L2 LINE L2 2560 3313 0 2089 171 133 15 chr12 88853061 88853528 -55428961 + Tigger1 DNA MER2_type 1 522 -1896 * 10713 147 8 13 chr12 88853526 88853581 -55428908 + Tigger1 DNA MER2_type 626 680 -1738 2255 77 13 3 chr12 88853581 88853880 -55428609 - AluSc SINE Alu -7 302 1 10713 147 8 13 chr12 88853880 88855625 -55426864 + Tigger1 DNA MER2_type 680 2417 -1 244 337 158 0 chr12 88856243 88856433 -55426056 + MIR SINE MIR 37 256 -6 467 214 143 77 chr12 88856614 88856660 -55425829 - MIR SINE MIR -1 261 219 1161 146 116 49 chr12 88856660 88856958 -55425531 - AluJb SINE Alu 0 316 1 467 214 143 77 chr12 88856958 88857106 -55425383 - MIR SINE MIR -43 219 53 1613 194 3 3 chr12 88858521 88858810 -55423679 - AluJo SINE Alu -23 289 1 604 316 33 51 chr12 88859128 88859463 -55423026 - MLT1K LTR MaLR -17 571 243 279 268 0 14 chr12 88859870 88859941 -55422548 + Charlie8 DNA MER1_type 3 72 -2345 28 29 0 0 chr12 88860160 88860195 -55422294 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 88860920 88860941 -55421548 + AT_rich Low_complexity Low_complexity 1 21 0 312 293 81 10 chr12 88861715 88861814 -55420675 - MIR SINE MIR -133 129 24 5571 52 13 3 chr12 88861829 88862546 -55419943 - L1PA7 LINE L1 0 6154 5431 374 348 65 20 chr12 88864095 88864388 -55418101 + L1M4 LINE L1 3742 4047 -2099 192 288 82 0 chr12 88864396 88864469 -55418020 + L2 LINE L2 3181 3259 -54 1857 203 80 30 chr12 88864732 88865170 -55417319 - MLT1C LTR MaLR -7 460 1 396 40 0 0 chr12 88865303 88865353 -55417136 + (TG)n Simple_repeat Simple_repeat 2 51 0 * 699 12 0 0 chr12 88865352 88865432 -55417057 + (TA)n Simple_repeat Simple_repeat 1 80 0 2292 98 10 0 chr12 88865528 88865834 -55416655 - AluSx SINE Alu -3 309 1 238 319 9 0 chr12 88866724 88866840 -55415649 - L1M LINE L1 -2379 5429 5313 2399 63 13 0 chr12 88867635 88867937 -55414552 - AluSp SINE Alu -7 306 1 22 103 0 0 chr12 88868023 88868101 -55414388 + AT_rich Low_complexity Low_complexity 1 78 0 733 186 8 0 chr12 88868806 88868930 -55413559 - FLAM_A SINE Alu -8 125 1 191 247 37 86 chr12 88868943 88869024 -55413465 + L2 LINE L2 3196 3272 0 1871 126 67 0 chr12 88869376 88869661 -55412828 - AluSx SINE Alu -8 304 1 23 68 0 0 chr12 88870533 88870577 -55411912 + AT_rich Low_complexity Low_complexity 1 44 0 239 379 97 0 chr12 88871388 88871512 -55410977 - L2 LINE L2 0 3272 3137 281 326 139 39 chr12 88871620 88871923 -55410566 - L2 LINE L2 -885 2429 2067 2056 89 65 0 chr12 88871923 88872215 -55410274 + AluY SINE Alu 1 311 0 281 326 139 39 chr12 88872215 88872349 -55410140 - L2 LINE L2 -1247 2067 1948 379 283 77 120 chr12 88873627 88873952 -55408537 + L2 LINE L2 2996 3306 -7 2396 69 0 3 chr12 88874356 88874662 -55407827 - AluY SINE Alu -6 305 1 2480 27 40 3 chr12 88874950 88875250 -55407239 - AluY SINE Alu 0 311 1 1585 196 7 10 chr12 88875705 88876006 -55406483 + AluJo SINE Alu 1 300 -12 28 0 0 0 chr12 88877094 88877122 -55405367 + AT_rich Low_complexity Low_complexity 1 28 0 268 265 157 44 chr12 88877156 88877294 -55405195 + MIR SINE MIR 13 163 -45 294 285 116 47 chr12 88878075 88878247 -55404242 + MIR SINE MIR 53 236 -26 1835 112 6 97 chr12 88878920 88879241 -55403248 - AluSx SINE Alu -20 292 1 34 0 0 0 chr12 88879938 88879972 -55402517 + AT_rich Low_complexity Low_complexity 1 34 0 243 61 0 0 chr12 88880127 88880160 -55402329 + (CA)n Simple_repeat Simple_repeat 2 34 0 2085 115 0 10 chr12 88880173 88880346 -55402143 - AluSx SINE Alu -19 293 123 192 40 0 0 chr12 88880346 88880371 -55402118 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2085 115 0 10 chr12 88880371 88880492 -55401997 - AluSx SINE Alu -189 123 2 457 229 14 49 chr12 88880536 88880680 -55401809 - MLT1J LTR MaLR -2 509 371 1165 180 23 14 chr12 88882701 88882918 -55399571 - MER20 DNA MER1_type 0 219 1 11754 219 30 21 chr12 88883671 88884081 -55398408 + L1PA16 LINE L1 2655 3060 -3809 1840 154 14 14 chr12 88884081 88884374 -55398115 - AluSx SINE Alu -19 293 1 11754 219 30 21 chr12 88884374 88885701 -55396788 + L1PA16 LINE L1 3060 4374 -2495 1556 189 33 13 chr12 88885701 88886007 -55396482 + AluJo SINE Alu 1 312 0 11754 219 30 21 chr12 88886007 88888423 -55394066 + L1PA16 LINE L1 4374 6863 -6 21 0 0 0 chr12 88888438 88888459 -55394030 + AT_rich Low_complexity Low_complexity 1 21 0 641 258 42 6 chr12 88888609 88888776 -55393713 + MIR SINE MIR 39 211 -51 366 61 0 0 chr12 88888813 88888862 -55393627 + (TTA)n Simple_repeat Simple_repeat 2 50 0 305 359 39 0 chr12 88889139 88889267 -55393222 + MIR SINE MIR 20 152 -110 204 212 186 53 chr12 88889406 88889519 -55392970 + L2 LINE L2 3167 3294 -19 23 33 0 0 chr12 88890199 88890229 -55392260 + AT_rich Low_complexity Low_complexity 1 30 0 188 395 67 46 chr12 88890529 88891025 -55391464 - L2 LINE L2 -1260 2054 1549 522 0 0 0 chr12 88891413 88891471 -55391018 + (TA)n Simple_repeat Simple_repeat 2 59 0 421 249 18 55 chr12 88893530 88893695 -55388794 + MER103 DNA DNA 2 160 -6 32 57 0 0 chr12 88894985 88895038 -55387451 + AT_rich Low_complexity Low_complexity 1 53 0 216 281 62 42 chr12 88895452 88895548 -55386941 + MIR3 SINE MIR 98 195 -13 22 0 0 0 chr12 88895909 88895931 -55386558 + AT_rich Low_complexity Low_complexity 1 22 0 444 289 104 25 chr12 88897719 88897920 -55384569 + MIR SINE MIR 31 247 -15 2548 14 0 7 chr12 88897958 88898253 -55384236 - AluYb8 SINE Alu -25 293 1 251 346 108 38 chr12 88898690 88898875 -55383614 - MIR3 SINE MIR -6 202 5 869 125 0 0 chr12 88901707 88901827 -55380662 + FLAM_C SINE Alu 1 120 -23 3010 163 119 16 chr12 88902180 88902820 -55379669 - MER39 LTR ERV1 0 707 2 276 61 0 0 chr12 88903009 88903042 -55379447 - U2 snRNA snRNA -155 33 1 24 0 0 0 chr12 88903245 88903269 -55379220 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 88903510 88903532 -55378957 + AT_rich Low_complexity Low_complexity 1 22 0 216 204 23 0 chr12 88903679 88903723 -55378766 + (CA)n Simple_repeat Simple_repeat 2 46 0 540 325 94 35 chr12 88904743 88905254 -55377235 + L1M4 LINE L1 4496 5036 -1110 239 385 33 0 chr12 88905936 88906058 -55376431 - MIR3 SINE MIR -33 175 50 5568 150 40 21 chr12 88906087 88907716 -55374773 - L1 LINE L1 -3277 4288 2627 211 313 124 46 chr12 88909567 88909784 -55372705 + MIR SINE MIR 3 236 -26 272 269 200 41 chr12 88909843 88909988 -55372501 + MIR SINE MIR 74 241 -21 193 373 9 27 chr12 88910459 88910569 -55371920 + MIR SINE MIR 47 154 -108 248 279 0 0 chr12 88910627 88910688 -55371801 + MER117 DNA MER1_type 17 77 -120 201 176 0 0 chr12 88910811 88910845 -55371644 + (TTA)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr12 88911135 88911164 -55371325 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr12 88912328 88912363 -55370126 + AT_rich Low_complexity Low_complexity 1 35 0 42 36 0 0 chr12 88912630 88912686 -55369803 + AT_rich Low_complexity Low_complexity 1 56 0 1649 171 24 0 chr12 88912686 88912973 -55369516 - AluJb SINE Alu -18 294 1 251 399 91 5 chr12 88913248 88913446 -55369043 + MIR SINE MIR 11 225 -37 189 0 0 0 chr12 88913460 88913481 -55369008 + (ATG)n Simple_repeat Simple_repeat 1 21 0 321 83 0 0 chr12 88913957 88914005 -55368484 + L1MA1 LINE L1 6232 6279 -23 285 206 15 0 chr12 88914369 88914437 -55368052 + MER116 DNA Mariner 7 75 -5 190 378 94 0 chr12 88914438 88914565 -55367924 - MIR SINE MIR -104 158 20 1915 127 14 0 chr12 88914795 88915071 -55367418 + AluSx SINE Alu 33 312 0 915 281 85 55 chr12 88915078 88915609 -55366880 + L1MEd LINE L1 20 566 -5553 467 373 83 47 chr12 88915817 88916310 -55366179 + HAL1 LINE L1 126 636 -1871 416 293 93 59 chr12 88916392 88916867 -55365622 + HAL1 LINE L1 687 1177 -1330 345 316 75 11 chr12 88918651 88918821 -55363668 - MIR SINE MIR -37 171 34 2224 121 0 0 chr12 88920597 88920904 -55361585 - AluSg SINE Alu -3 307 1 1633 146 17 10 chr12 88920940 88921228 -55361261 + Tigger2 DNA MER2_type 2 291 -2427 548 210 10 0 chr12 88921236 88921336 -55361153 + Tigger2 DNA MER2_type 2618 2718 0 820 249 18 58 chr12 88921375 88921705 -55360784 - MER83C LTR ERV1 -10 363 47 1405 156 91 18 chr12 88921776 88922052 -55360437 - AluSg SINE Alu -11 299 4 255 61 0 0 chr12 88922948 88922981 -55359508 + (CA)n Simple_repeat Simple_repeat 2 34 0 451 230 151 7 chr12 88923416 88923555 -55358934 - AluJb SINE Alu -13 299 141 374 132 0 15 chr12 88924777 88924845 -55357644 + (TCTCCC)n Simple_repeat Simple_repeat 4 70 0 186 207 0 0 chr12 88924844 88924902 -55357587 + (TA)n Simple_repeat Simple_repeat 1 58 0 * 345 24 0 0 chr12 88924929 88924971 -55357518 + (TG)n Simple_repeat Simple_repeat 1 42 0 552 100 0 0 chr12 88924971 88925051 -55357438 + (TA)n Simple_repeat Simple_repeat 1 80 0 3041 149 32 4 chr12 88926520 88927078 -55355411 - L1MC3 LINE L1 -8 7777 7204 2169 111 26 61 chr12 88927080 88927457 -55355032 - THE1B LTR MaLR 0 364 1 9814 106 8 25 chr12 88927457 88927764 -55354725 - THE1B-int LTR MaLR 0 1580 1270 2191 110 0 0 chr12 88927764 88928056 -55354433 - AluY SINE Alu -19 292 1 9814 106 8 25 chr12 88928056 88928977 -55353512 - THE1B-int LTR MaLR -310 1270 376 2213 116 10 0 chr12 88928977 88929287 -55353202 + AluSp SINE Alu 1 313 0 9814 106 8 25 chr12 88929287 88929485 -55353004 - THE1B-int LTR MaLR -1204 376 176 5671 241 65 26 chr12 88929546 88932286 -55350203 - L1PA13 LINE L1 -2438 4359 1500 405 0 0 0 chr12 88932344 88932389 -55350100 + (T)n Simple_repeat Simple_repeat 1 45 0 1014 136 154 101 chr12 88932465 88932625 -55349864 + AluSx SINE Alu 2 185 -117 1546 113 0 23 chr12 88932625 88932846 -55349643 + AluSg/x SINE Alu 86 301 -11 1014 136 154 101 chr12 88932846 88932971 -55349518 + AluSx SINE Alu 185 302 0 301 256 16 64 chr12 88933199 88933324 -55349165 - L1PA13 LINE L1 -5271 1516 1398 1158 340 36 32 chr12 88933404 88933993 -55348496 - L1PA13 LINE L1 -6195 592 2 815 225 9 44 chr12 88934004 88934143 -55348346 - L1MCb LINE L1 -2801 3763 3621 4535 34 33 22 chr12 88934143 88934725 -55347764 + L1PA6 LINE L1 5563 6150 -4 815 225 9 44 chr12 88934725 88934986 -55347503 - L1MCb LINE L1 -2943 3621 3393 2940 229 108 26 chr12 88935005 88935704 -55346785 - L1MCb LINE L1 -4114 2450 1810 562 76 13 0 chr12 88935704 88935783 -55346706 - MADE1 DNA Mariner 0 80 1 2940 229 108 26 chr12 88935783 88937214 -55345275 - L1MCb LINE L1 -4754 1810 41 1899 148 4 37 chr12 88937361 88937753 -55344736 - Charlie3 DNA MER1_type 0 2712 1 2964 147 22 6 chr12 88937822 88938311 -55344178 + LOR1a LTR ERV1 1 497 0 2026 138 0 0 chr12 88938450 88938756 -55343733 - AluSq SINE Alu 0 306 1 689 244 104 41 chr12 88938873 88939094 -55343395 + MIR SINE MIR 26 260 -2 209 269 58 0 chr12 88939524 88939576 -55342913 + L2 LINE L2 3256 3310 -3 206 338 166 0 chr12 88939717 88939856 -55342633 + L2 LINE L2 3106 3267 -5 822 208 0 0 chr12 88941797 88941951 -55340538 - AluSg/x SINE Alu -25 285 132 2105 101 10 0 chr12 88941951 88942248 -55340241 - AluSq SINE Alu -1 312 13 445 292 112 30 chr12 88942463 88942696 -55339793 - MIR SINE MIR -1 261 10 224 279 0 44 chr12 88944202 88944270 -55338219 + L2 LINE L2 3249 3313 0 908 239 34 13 chr12 88944356 88944595 -55337894 + MIR SINE MIR 19 262 0 256 273 202 0 chr12 88944916 88945015 -55337474 + MER94 DNA DNA 1 119 -15 270 113 32 16 chr12 88945625 88945687 -55336802 + (TA)n Simple_repeat Simple_repeat 2 64 0 199 337 179 11 chr12 88946845 88947118 -55335371 + L2 LINE L2 1705 2023 -1291 387 354 156 29 chr12 88947549 88947928 -55334561 + L2 LINE L2 2841 3267 -5 26 30 0 0 chr12 88948686 88948719 -55333770 + AT_rich Low_complexity Low_complexity 1 33 0 230 333 10 21 chr12 88948969 88949065 -55333424 + L2 LINE L2 2366 2460 -854 919 197 0 0 chr12 88949073 88949225 -55333264 + FRAM SINE Alu 4 155 -21 539 319 209 8 chr12 88949238 88949501 -55332988 + L2 LINE L2 2453 2768 -546 435 222 40 0 chr12 88949513 88949612 -55332877 + U6 snRNA snRNA 3 105 -2 200 33 0 33 chr12 88949718 88949748 -55332741 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 481 291 126 29 chr12 88949919 88950197 -55332292 + L2 LINE L2 3004 3308 -5 474 300 152 46 chr12 88950447 88950967 -55331522 - L1ME4a LINE L1 -225 5896 5322 1078 153 4 55 chr12 88951636 88951872 -55330617 + L1MA4A LINE L1 6068 6291 -12 22 0 0 0 chr12 88951872 88951894 -55330595 + AT_rich Low_complexity Low_complexity 1 22 0 1747 156 4 4 chr12 88952531 88952807 -55329682 + AluSx SINE Alu 1 276 -36 186 43 0 0 chr12 88952824 88952847 -55329642 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 298 154 26 0 chr12 88952979 88953057 -55329432 + (TA)n Simple_repeat Simple_repeat 1 80 0 2232 231 78 71 chr12 88953089 88953880 -55328609 - MER21B LTR ERV1 -48 815 19 378 232 0 37 chr12 88953902 88953984 -55328505 - MER21B LTR ERV1 -773 90 12 29 78 0 0 chr12 88953984 88954048 -55328441 + AT_rich Low_complexity Low_complexity 1 64 0 333 0 0 0 chr12 88954327 88954364 -55328125 + (TG)n Simple_repeat Simple_repeat 1 37 0 992 203 0 32 chr12 88955008 88955225 -55327264 + MER6B DNA MER2_type 1 210 0 1193 176 131 33 chr12 88955941 88956247 -55326242 - L1MC2 LINE L1 -1 6343 6008 200 308 192 33 chr12 88956255 88956375 -55326114 - MIR SINE MIR -122 140 2 261 0 0 0 chr12 88956736 88956765 -55325724 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1320 125 49 27 chr12 88956832 88957056 -55325433 - MER30 DNA MER1_type 0 230 2 202 298 0 0 chr12 88958027 88958084 -55324405 + A-rich Low_complexity Low_complexity 4 60 0 342 0 0 0 chr12 88959880 88959918 -55322571 + (TA)n Simple_repeat Simple_repeat 1 38 0 2123 101 0 57 chr12 88960166 88960483 -55322006 - AluSq SINE Alu -14 299 1 21 0 0 0 chr12 88960645 88960666 -55321823 + AT_rich Low_complexity Low_complexity 1 21 0 270 312 55 18 chr12 88960916 88961025 -55321464 - MIR3 SINE MIR -5 203 91 2356 88 0 3 chr12 88961096 88961402 -55321087 + AluSg SINE Alu 4 308 -2 306 250 0 0 chr12 88961406 88961474 -55321015 + L1MC4 LINE L1 6636 6703 -1339 369 145 0 0 chr12 88961474 88961536 -55320953 + (TA)n Simple_repeat Simple_repeat 2 63 0 374 342 190 21 chr12 88961815 88962262 -55320227 - L2 LINE L2 -222 3091 2561 188 317 100 17 chr12 88962280 88962400 -55320089 + L2 LINE L2 3168 3297 -16 194 212 0 121 chr12 88963034 88963100 -55319389 + MIR3 SINE MIR 111 168 -40 237 277 138 43 chr12 88963809 88963903 -55318586 - L2 LINE L2 -31 3241 3139 24 53 0 0 chr12 88963978 88964016 -55318473 + AT_rich Low_complexity Low_complexity 1 38 0 189 306 71 0 chr12 88964120 88964205 -55318284 - MIR SINE MIR -75 187 97 2561 146 46 2 chr12 88964325 88964763 -55317726 - MSTB2 LTR MaLR 0 457 1 2463 25 0 0 chr12 88965626 88965912 -55316577 + L1PA4 LINE L1 5859 6144 -11 2317 98 0 3 chr12 88966550 88966855 -55315634 - AluSq SINE Alu -9 304 1 24 53 0 0 chr12 88967063 88967101 -55315388 + AT_rich Low_complexity Low_complexity 1 38 0 384 272 103 38 chr12 88967115 88967299 -55315190 - MIR SINE MIR -1 261 66 327 350 0 44 chr12 88967737 88967874 -55314615 - MIR SINE MIR -112 150 20 2349 78 7 3 chr12 88968297 88968604 -55313885 - AluY SINE Alu -1 310 3 202 267 230 50 chr12 88968931 88969092 -55313397 + MIR SINE MIR 60 249 -13 28 0 0 0 chr12 88969105 88969133 -55313356 + AT_rich Low_complexity Low_complexity 1 28 0 266 156 0 0 chr12 88971130 88971175 -55311314 + L1ME3A LINE L1 6027 6071 -99 184 400 90 20 chr12 88971298 88971398 -55311091 + L2 LINE L2 3138 3244 -28 527 255 226 31 chr12 88971902 88972268 -55310221 - L2 LINE L2 -308 3005 2531 1021 181 83 0 chr12 88973286 88973330 -55309159 + MER50 LTR ERV1 1 40 -694 384 22 0 0 chr12 88973330 88973375 -55309114 + (CA)n Simple_repeat Simple_repeat 1 45 0 1021 181 83 0 chr12 88973375 88973546 -55308943 + MER50 LTR ERV1 40 234 -500 * 1576 161 4 7 chr12 88973544 88973817 -55308672 + MER50 LTR ERV1 433 704 -30 902 204 17 11 chr12 88973926 88974107 -55308382 + MER5A DNA MER1_type 1 182 -7 271 272 204 0 chr12 88974454 88974557 -55307932 - MER94 DNA DNA 0 134 11 2059 114 0 0 chr12 88976311 88976591 -55305898 - AluSx SINE Alu -32 280 1 5165 125 8 3 chr12 88976810 88977586 -55304903 - L1PA15 LINE L1 -32 6133 5354 1395 107 26 39 chr12 88978802 88979035 -55303454 - MER30 DNA MER1_type 0 230 1 326 115 0 33 chr12 88979860 88979921 -55302568 - L1MD2 LINE L1 -16 6343 6285 376 335 29 12 chr12 88981530 88981703 -55300786 + MLT1I LTR MaLR 5 180 -229 392 291 61 14 chr12 88981739 88981887 -55300602 + MLT1I LTR MaLR 255 409 0 189 181 0 36 chr12 88982200 88982283 -55300206 + (TA)n Simple_repeat Simple_repeat 1 80 0 323 283 82 99 chr12 88982695 88982988 -55299501 - LTR67 LTR ERVL -256 301 14 339 25 0 0 chr12 88983328 88983368 -55299121 + (TG)n Simple_repeat Simple_repeat 2 41 0 275 349 27 13 chr12 88983391 88983540 -55298949 - MIR SINE MIR -1 261 111 27 29 0 0 chr12 88983755 88983789 -55298700 + AT_rich Low_complexity Low_complexity 1 34 0 271 299 190 15 chr12 88984494 88984631 -55297858 - MER5A DNA MER1_type -16 173 13 21 0 0 0 chr12 88985423 88985444 -55297045 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 88987339 88987367 -55295122 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr12 88989295 88989323 -55293166 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr12 88989546 88989570 -55292919 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 184 283 0 0 chr12 88990260 88990306 -55292183 - L2 LINE L2 0 3272 3227 1008 195 201 18 chr12 88990547 88990886 -55291603 - MER39 LTR ERV1 0 707 307 271 327 89 0 chr12 88990871 88990972 -55291517 - MER39 LTR ERV1 -574 133 24 * 397 204 270 22 chr12 88991072 88991209 -55291280 - MIR SINE MIR 0 262 92 365 231 319 6 chr12 88991336 88991496 -55290993 - L2 LINE L2 -1 3312 3103 429 69 17 0 chr12 88992266 88992324 -55290165 - 5S rRNA rRNA -31 90 32 262 309 105 21 chr12 88994553 88994744 -55287745 - L2 LINE L2 -1040 2274 2068 28 29 0 0 chr12 88996315 88996350 -55286139 + AT_rich Low_complexity Low_complexity 1 35 0 14381 189 39 11 chr12 88996350 88998773 -55283716 - L1PB1 LINE L1 -8 6859 4507 2430 68 0 10 chr12 88998773 88999080 -55283409 - AluY SINE Alu -7 304 1 14381 189 39 11 chr12 88999080 89002061 -55280428 - L1PB1 LINE L1 -2360 4507 1297 2705 230 68 41 chr12 89002074 89003017 -55279472 - L1PB1 LINE L1 -5890 973 6 285 293 57 0 chr12 89004118 89004241 -55278248 + Charlie8 DNA MER1_type 116 245 -2172 608 201 45 13 chr12 89004604 89004744 -55277745 - MER31B LTR ERV1 0 466 322 640 234 63 64 chr12 89004744 89005141 -55277348 + MER34 LTR ERV1 1 603 -104 2237 110 0 3 chr12 89005195 89005494 -55276995 - AluSc SINE Alu -9 300 3 234 0 0 0 chr12 89005504 89005530 -55276959 + (T)n Simple_repeat Simple_repeat 1 26 0 1449 172 33 74 chr12 89005596 89005933 -55276556 - MER31B LTR ERV1 -143 323 1 195 42 0 0 chr12 89007987 89008011 -55274478 + (TC)n Simple_repeat Simple_repeat 2 25 0 272 224 243 28 chr12 89008162 89008269 -55274220 - MIR SINE MIR -116 146 17 183 412 41 0 chr12 89008574 89008671 -55273818 - L2 LINE L2 -26 3246 3146 23 0 0 0 chr12 89008948 89008971 -55273518 + AT_rich Low_complexity Low_complexity 1 23 0 534 165 0 3 chr12 89009381 89009615 -55272874 + AluJo SINE Alu 1 291 -21 354 346 62 25 chr12 89010552 89010792 -55271697 + MIR SINE MIR 11 259 -3 560 293 153 23 chr12 89010906 89011258 -55271231 + L2 LINE L2 2912 3309 -4 365 241 46 11 chr12 89013596 89013683 -55268806 - MER5B DNA MER1_type -1 177 88 707 190 0 19 chr12 89013796 89013954 -55268535 - SVA Other Other -782 604 450 407 223 43 21 chr12 89013956 89014050 -55268439 - MER5B DNA MER1_type -82 96 1 351 151 54 32 chr12 89014085 89014178 -55268311 + MIR SINE MIR 52 146 -62 12872 151 32 13 chr12 89014198 89016410 -55266079 - Tigger1 DNA MER2_type -5 2413 161 733 173 18 0 chr12 89016413 89016557 -55265932 - LTR47A LTR ERVL -2 450 290 234 162 297 0 chr12 89016960 89017034 -55265455 + MIR SINE MIR 156 251 -11 225 83 0 0 chr12 89017449 89017485 -55265004 + (A)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr12 89018919 89018947 -55263542 + AT_rich Low_complexity Low_complexity 1 28 0 376 308 65 27 chr12 89018962 89019147 -55263342 - L1ME LINE L1 -397 5724 5533 328 257 91 59 chr12 89019170 89019357 -55263132 - L1ME LINE L1 -759 5483 5291 377 271 98 78 chr12 89019912 89020221 -55262268 - MLT1J1 LTR MaLR -157 354 1 345 258 60 80 chr12 89021404 89021555 -55260934 - L2 LINE L2 -5 3308 3161 196 354 172 28 chr12 89022171 89022561 -55259928 - L2 LINE L2 -630 2684 2239 422 213 5 144 chr12 89022758 89022855 -55259634 - L2 LINE L2 -778 2536 2476 2489 66 0 0 chr12 89022855 89023156 -55259333 - AluY SINE Alu -2 309 9 422 213 5 144 chr12 89023156 89023246 -55259243 - L2 LINE L2 -838 2476 2375 194 304 76 65 chr12 89023905 89024037 -55258452 + L2 LINE L2 2776 2912 -402 2097 96 63 61 chr12 89024037 89024400 -55258089 - THE1B LTR MaLR 0 364 1 194 304 76 65 chr12 89024400 89024451 -55258038 + L2 LINE L2 2912 2961 -353 429 311 46 15 chr12 89024530 89024726 -55257763 + L2 LINE L2 3106 3307 -6 223 310 0 17 chr12 89024763 89024821 -55257668 - MIR SINE MIR -175 87 31 217 229 0 0 chr12 89024915 89024963 -55257526 + (CA)n Simple_repeat Simple_repeat 1 48 0 500 335 127 22 chr12 89025121 89025818 -55256671 - L2 LINE L2 0 3313 2536 2094 117 0 13 chr12 89027546 89027844 -55254645 - AluSx SINE Alu -18 294 1 206 74 74 0 chr12 89027981 89028035 -55254454 + (TTTG)n Simple_repeat Simple_repeat 4 61 0 261 390 32 8 chr12 89028046 89028169 -55254320 - MIR3 SINE MIR -78 130 5 1717 173 123 13 chr12 89030924 89031305 -55251184 - MSTB LTR MaLR 0 426 4 8440 177 27 31 chr12 89031308 89032965 -55249524 - MSTA-int LTR MaLR 0 1651 1 2163 161 73 0 chr12 89032965 89033363 -55249126 - MSTA LTR MaLR 0 428 2 457 269 100 35 chr12 89033364 89033624 -55248865 + L1MEd LINE L1 659 935 -5270 2021 98 4 0 chr12 89033880 89034145 -55248344 + AluSq SINE Alu 39 304 -9 285 304 64 40 chr12 89034175 89034550 -55247939 + L1MEd LINE L1 1370 1753 -4643 1034 216 158 32 chr12 89034876 89035256 -55247233 - MSTB LTR MaLR 0 428 1 1917 136 172 8 chr12 89035461 89035828 -55246661 + MSTA LTR MaLR 1 427 -1 31 0 0 0 chr12 89035889 89035920 -55246569 + AT_rich Low_complexity Low_complexity 1 31 0 2031 88 0 4 chr12 89036009 89036269 -55246220 + AluSc SINE Alu 36 294 -15 241 258 32 145 chr12 89036530 89036713 -55245776 + L2 LINE L2 72 227 -3087 2014 124 185 3 chr12 89036713 89037075 -55245414 - MSTA LTR MaLR 0 428 1 241 258 32 145 chr12 89037075 89037112 -55245377 + L2 LINE L2 227 267 -3047 3352 279 105 43 chr12 89037152 89038677 -55243812 + L2 LINE L2 827 2446 -868 205 278 237 40 chr12 89038677 89038850 -55243639 + L2 LINE L2 2563 2769 -545 985 217 97 0 chr12 89038900 89039184 -55243305 - MER58B DNA MER1_type -1 340 2 239 329 27 27 chr12 89039203 89039352 -55243137 + L2 LINE L2 3099 3247 -66 21 0 0 0 chr12 89039457 89039478 -55243011 + AT_rich Low_complexity Low_complexity 1 21 0 1247 160 15 0 chr12 89039537 89039737 -55242752 + AluJb SINE Alu 87 289 -23 1272 212 40 53 chr12 89041733 89042110 -55240379 + MLT1A2 LTR MaLR 1 372 -2 380 171 0 11 chr12 89042462 89042550 -55239939 + (TA)n Simple_repeat Simple_repeat 1 87 0 12545 184 57 59 chr12 89043277 89043398 -55239091 - L1PB1 LINE L1 0 6867 6747 228 86 0 0 chr12 89043398 89043433 -55239056 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1567 143 13 0 chr12 89043433 89043671 -55238818 - AluSg SINE Alu -29 281 41 12545 184 57 59 chr12 89043671 89045521 -55236968 - L1PB1 LINE L1 -119 6748 4896 315 0 0 0 chr12 89045521 89045556 -55236933 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 12545 184 57 59 chr12 89045556 89050472 -55232017 - L1PB1 LINE L1 -1971 4896 6 210 233 0 23 chr12 89051593 89051636 -55230853 + L2 LINE L2 3137 3178 -94 263 270 80 20 chr12 89051790 89051890 -55230599 + L2 LINE L2 3200 3305 -8 186 430 89 13 chr12 89051959 89052117 -55230372 - L2 LINE L2 -5 3267 3098 244 274 9 19 chr12 89053049 89053155 -55229334 + L1ME LINE L1 5322 5426 -2382 1004 174 89 28 chr12 89053170 89053383 -55229106 - MER46A DNA MER2_type 0 236 11 397 294 109 5 chr12 89053435 89053619 -55228870 + L1ME LINE L1 5481 5683 -438 35 0 0 0 chr12 89053802 89053837 -55228652 + AT_rich Low_complexity Low_complexity 1 35 0 189 352 51 61 chr12 89054149 89054345 -55228144 - L2 LINE L2 -682 2632 2439 417 260 226 0 chr12 89056225 89056371 -55226118 - MER5A DNA MER1_type 0 189 11 21 36 0 0 chr12 89056731 89056759 -55225730 + AT_rich Low_complexity Low_complexity 1 28 0 354 242 73 48 chr12 89057435 89057559 -55224930 - MIR SINE MIR -118 144 18 302 339 95 16 chr12 89058347 89058536 -55223953 - MIR SINE MIR -11 251 48 21 0 0 0 chr12 89062350 89062371 -55220118 + AT_rich Low_complexity Low_complexity 1 21 0 389 275 65 22 chr12 89063065 89063203 -55219286 - MIR SINE MIR -90 172 29 277 336 14 50 chr12 89063350 89063490 -55218999 - MIR3 SINE MIR -6 202 68 11617 130 33 6 chr12 89064838 89066759 -55215730 - L1P LINE L1 -1052 5094 3122 2136 120 3 0 chr12 89067278 89067577 -55214912 - AluSg SINE Alu -2 308 9 1682 265 115 17 chr12 89067746 89068286 -55214203 - MLT1E LTR MaLR 0 593 1 528 260 207 0 chr12 89068287 89068437 -55214052 - MIR SINE MIR -72 190 10 2389 81 0 0 chr12 89068609 89068919 -55213570 + AluY SINE Alu 1 310 -1 182 129 65 0 chr12 89069097 89069128 -55213361 - L2 LINE L2 -328 2985 2953 2107 117 0 0 chr12 89069408 89069714 -55212775 - AluSq SINE Alu 0 306 1 225 254 18 0 chr12 89070350 89070405 -55212084 + L2 LINE L2 3004 3059 -213 486 248 20 0 chr12 89070545 89070646 -55211843 + MER5A DNA MER1_type 10 112 -77 239 314 91 25 chr12 89070830 89070951 -55211538 + MER5A DNA MER1_type 55 183 -6 3203 139 9 14 chr12 89071505 89071996 -55210493 - L1PA15 LINE L1 0 6165 5676 1664 159 85 23 chr12 89071996 89072349 -55210140 - THE1C LTR MaLR 0 375 1 3203 139 9 14 chr12 89072349 89072411 -55210078 - L1PA15 LINE L1 -489 5676 5615 2126 166 28 10 chr12 89072511 89073356 -55209133 - L1PA15 LINE L1 -537 5628 4664 2155 75 0 0 chr12 89073356 89073637 -55208852 - LTR19B LTR ERV1 -299 281 1 3440 200 39 9 chr12 89073637 89074408 -55208081 - L1PA15 LINE L1 -1486 4660 3867 2688 239 4 25 chr12 89074393 89075150 -55207339 - L1PA15 LINE L1 -3047 3099 2359 * 2077 127 141 5 chr12 89075156 89075533 -55206956 + MSTA LTR MaLR 1 428 0 7997 189 57 7 chr12 89075533 89077106 -55205383 + MSTA-int LTR MaLR 1 1651 0 1387 167 73 38 chr12 89077106 89077479 -55205010 + MSTA LTR MaLR 1 364 0 581 288 7 0 chr12 89077480 89077633 -55204856 - L1PA15 LINE L1 -3790 2356 2203 182 326 42 104 chr12 89079395 89079539 -55202950 - MIR3 SINE MIR -19 189 55 951 226 165 95 chr12 89079680 89080184 -55202305 - MLT1F1 LTR MaLR -2 565 2 1843 230 23 13 chr12 89080292 89080688 -55201801 + MER70A LTR ERVL 73 472 0 687 170 0 0 chr12 89081813 89081966 -55200523 + T-rich Low_complexity Low_complexity 1 153 0 35 41 0 0 chr12 89083871 89083920 -55198569 + AT_rich Low_complexity Low_complexity 1 49 0 1532 206 73 25 chr12 89084727 89085164 -55197325 + pTR5 LTR ERV1 741 1198 -1240 2788 143 175 77 chr12 89085284 89086033 -55196456 + LTR12 LTR ERV1 5 826 0 2275 73 37 0 chr12 89087267 89087567 -55194922 + AluY SINE Alu 1 311 0 186 71 0 0 chr12 89087644 89087672 -55194817 + (T)n Simple_repeat Simple_repeat 1 28 0 328 274 98 64 chr12 89087695 89087899 -55194590 + MER102b DNA MER1_type 130 340 -1 21 0 0 0 chr12 89088079 89088100 -55194389 + AT_rich Low_complexity Low_complexity 1 21 0 2163 132 13 0 chr12 89089241 89089545 -55192944 - AluSx SINE Alu -2 310 3 521 197 164 8 chr12 89089938 89090060 -55192429 + MER58 DNA MER1_type 1 141 -200 238 224 0 69 chr12 89090206 89090264 -55192225 + MLT1L LTR MaLR 224 277 -338 413 257 118 37 chr12 89090286 89090552 -55191937 + MLT1L LTR MaLR 243 535 -4 284 250 60 36 chr12 89091107 89091191 -55191298 - L2 LINE L2 0 3272 3187 695 255 103 5 chr12 89091200 89091384 -55191105 - MIR SINE MIR 0 262 61 696 301 60 8 chr12 89091530 89091779 -55190710 + MIR SINE MIR 1 262 0 359 22 43 0 chr12 89091934 89091980 -55190509 - MLT2C2 LTR ERVL 0 464 417 556 181 70 27 chr12 89092025 89092153 -55190336 - MLT2B1 LTR ERVL -36 456 244 3781 131 22 9 chr12 89092153 89092732 -55189757 - ERVL LTR ERVL -731 5033 4447 2158 28 0 0 chr12 89093379 89093633 -55188856 + L1PA3 LINE L1 5897 6150 -5 242 0 125 0 chr12 89093638 89093686 -55188803 + A-rich Low_complexity Low_complexity 2 55 0 2432 76 0 13 chr12 89094154 89094469 -55188020 - AluY SINE Alu 0 311 1 189 254 36 0 chr12 89094740 89094795 -55187694 + MIR3 SINE MIR 149 205 -3 1542 148 30 16 chr12 89099059 89099363 -55183126 - L1P LINE L1 -1977 4169 3862 * 4420 110 5 4 chr12 89099354 89100675 -55181814 + L1PA11 LINE L1 4647 6173 -1 243 304 205 9 chr12 89101171 89101283 -55181206 - L2 LINE L2 0 3313 3180 2079 96 11 0 chr12 89102882 89103183 -55179306 + AluSq SINE Alu 4 313 0 467 296 56 0 chr12 89103677 89103802 -55178687 - L2 LINE L2 -19 3253 3122 463 361 16 11 chr12 89104157 89104528 -55177961 + L1ME3A LINE L1 5584 5956 -214 489 318 103 64 chr12 89104556 89105726 -55176763 - L2 LINE L2 -554 2760 1203 409 311 118 0 chr12 89106676 89106811 -55175678 + MIR3 SINE MIR 35 185 -23 853 314 136 34 chr12 89107102 89107959 -55174530 + L2 LINE L2 2242 3198 -115 31 68 0 0 chr12 89108598 89108657 -55173832 + AT_rich Low_complexity Low_complexity 1 59 0 10937 146 26 5 chr12 89108658 89110469 -55172020 - Tigger1 DNA MER2_type -569 1849 1 25 51 0 0 chr12 89110495 89110534 -55171955 + AT_rich Low_complexity Low_complexity 1 39 0 508 283 30 53 chr12 89110720 89110985 -55171504 - L1ME3A LINE L1 -223 5947 5689 559 209 95 81 chr12 89111016 89111227 -55171262 + MER112 DNA MER1_type 1 214 -46 2097 145 0 0 chr12 89111260 89111563 -55170926 + AluSx SINE Alu 1 303 -9 631 176 118 0 chr12 89112197 89112340 -55170149 - FLAM_A SINE Alu 0 157 1 799 208 53 68 chr12 89113573 89113753 -55168736 - MER63A DNA MER1_type -1478 210 32 1970 109 39 0 chr12 89113753 89114038 -55168451 + AluSx SINE Alu 1 296 -16 799 208 53 68 chr12 89114038 89114064 -55168425 - MER63A DNA MER1_type -1656 32 7 754 262 48 19 chr12 89114682 89114888 -55167601 + MER20 DNA MER1_type 7 218 -1 220 350 82 10 chr12 89116251 89116348 -55166141 - L2 LINE L2 0 3272 3169 619 245 155 0 chr12 89116385 89116540 -55165949 + MER5A DNA MER1_type 10 188 -1 252 0 0 0 chr12 89117529 89117557 -55164932 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 250 196 0 0 chr12 89117873 89117919 -55164570 - L2 LINE L2 0 3313 3268 226 343 71 0 chr12 89118242 89118312 -55164177 + L2 LINE L2 3158 3232 -40 * 418 355 88 52 chr12 89118311 89118949 -55163540 - L2 LINE L2 0 3272 2611 299 344 0 13 chr12 89119009 89119163 -55163326 + L1MEd LINE L1 3 154 -5965 1197 225 96 37 chr12 89119273 89119762 -55162727 - L1MC5 LINE L1 -36 7925 7408 423 277 67 22 chr12 89119960 89120184 -55162305 + L1MEd LINE L1 590 823 -5296 510 280 48 96 chr12 89120536 89120782 -55161707 + L1MEd LINE L1 1097 1353 -4776 2339 61 0 49 chr12 89120782 89121108 -55161381 - AluY SINE Alu -1 310 1 510 280 48 96 chr12 89121108 89121434 -55161055 + L1MEd LINE L1 1353 1628 -4501 620 308 4 17 chr12 89121519 89121756 -55160733 + L1ME3A LINE L1 5653 5886 -284 1866 97 52 21 chr12 89121764 89122052 -55160437 + AluSx SINE Alu 1 297 -15 224 315 18 63 chr12 89122988 89123099 -55159390 + MIR3 SINE MIR 93 198 -10 2003 133 3 3 chr12 89123123 89123423 -55159066 - AluSx SINE Alu -12 300 1 252 0 0 0 chr12 89123625 89123653 -55158836 + (ATATG)n Simple_repeat Simple_repeat 2 29 0 365 284 28 14 chr12 89124870 89125011 -55157478 - MER103 DNA DNA -1 165 23 566 264 27 7 chr12 89125171 89125319 -55157170 - MIR SINE MIR -1 261 111 22 0 0 0 chr12 89125559 89125581 -55156908 + AT_rich Low_complexity Low_complexity 1 22 0 2211 108 3 3 chr12 89125581 89125887 -55156602 + AluSq SINE Alu 1 306 -7 1277 68 0 6 chr12 89126312 89126474 -55156015 + AluSq SINE Alu 64 224 -89 273 163 0 0 chr12 89126508 89126551 -55155938 - L1MC/D LINE L1 -2210 5785 5743 5025 200 44 26 chr12 89126553 89127736 -55154753 - L1MC1 LINE L1 -43 6290 5065 1724 194 30 30 chr12 89127736 89128101 -55154388 - MLT1A1 LTR MaLR 0 365 1 5025 200 44 26 chr12 89128101 89128758 -55153731 - L1MC1 LINE L1 -1268 5065 4421 239 242 242 0 chr12 89128883 89128949 -55153540 + L2 LINE L2 3231 3312 -1 465 283 111 52 chr12 89129036 89129442 -55153047 + MLT1L LTR MaLR 142 571 -44 27 0 0 0 chr12 89131477 89131504 -55150985 + AT_rich Low_complexity Low_complexity 1 27 0 236 308 71 99 chr12 89131531 89131713 -55150776 - MER5B DNA MER1_type 0 178 2 353 260 89 6 chr12 89131920 89132089 -55150400 - L1ME3A LINE L1 -219 5951 5769 2347 59 9 50 chr12 89132410 89132731 -55149758 - AluSp SINE Alu -5 308 1 390 286 37 19 chr12 89132830 89132991 -55149498 - LTR41 LTR ERVL -607 166 3 384 363 79 5 chr12 89133115 89133300 -55149189 + HERVL LTR ERVL 4163 4404 -1157 736 344 65 27 chr12 89133404 89133929 -55148560 + HERVL LTR ERVL 4627 5137 -517 1594 96 107 21 chr12 89134173 89134453 -55148036 + AluSx SINE Alu 1 304 -8 903 318 63 16 chr12 89134564 89134929 -55147560 + LTR16A LTR ERVL 52 433 -17 335 243 25 30 chr12 89135088 89135290 -55147199 - L1ME LINE L1 -5164 906 706 282 303 84 46 chr12 89136313 89136993 -55145496 - L1MEc LINE L1 -4667 1643 899 476 321 50 43 chr12 89137040 89137575 -55144914 - L1MEc LINE L1 -5020 1099 561 259 254 55 27 chr12 89137710 89137820 -55144669 - MLT1I LTR MaLR -6 403 291 556 264 49 12 chr12 89137867 89138030 -55144459 - MLT1J2 LTR MaLR -281 169 1 216 0 0 0 chr12 89138114 89138138 -55144351 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2136 113 3 3 chr12 89138190 89138501 -55143988 + AluSp SINE Alu 1 311 -2 279 0 0 0 chr12 89140160 89140191 -55142298 + (CA)n Simple_repeat Simple_repeat 2 32 0 2202 113 0 3 chr12 89140205 89140507 -55141982 - AluSx SINE Alu -11 301 1 1878 113 16 53 chr12 89140725 89141043 -55141446 + AluSg SINE Alu 1 306 -4 3011 156 10 14 chr12 89141111 89141598 -55140891 - MER41E LTR ERV1 0 512 28 4669 135 8 6 chr12 89141897 89142623 -55139866 - MER4D LTR ERV1 0 903 176 207 366 18 18 chr12 89142641 89142753 -55139736 + MER5A DNA MER1_type 77 188 -1 210 184 0 20 chr12 89145148 89145197 -55137292 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 2024 189 85 22 chr12 89145404 89145865 -55136624 + LTR2B LTR ERV1 1 490 0 360 324 48 53 chr12 89146496 89146703 -55135786 + L2 LINE L2 3108 3313 0 188 380 65 19 chr12 89147361 89147469 -55135020 + L2 LINE L2 3154 3266 -6 441 282 104 12 chr12 89147658 89147821 -55134668 - MIR3 SINE MIR -15 193 16 949 260 186 25 chr12 89147893 89148201 -55134288 - Charlie7 DNA MER1_type 0 2612 2355 2072 118 10 22 chr12 89148201 89148515 -55133974 + AluSq SINE Alu 1 310 -3 949 260 186 25 chr12 89148515 89148933 -55133556 - Charlie7 DNA MER1_type -257 2355 1769 1228 320 52 16 chr12 89148958 89149571 -55132918 - Charlie7 DNA MER1_type -1971 641 7 26 30 0 0 chr12 89150111 89150144 -55132345 + AT_rich Low_complexity Low_complexity 1 33 0 2434 113 36 5 chr12 89150178 89150569 -55131920 - L1MA4A LINE L1 0 6303 5901 3987 112 43 2 chr12 89150569 89151214 -55131275 + L1MA4A LINE L1 5231 5898 -405 2665 189 39 40 chr12 89151383 89151781 -55130708 + L1MB7 LINE L1 4950 5347 -837 1869 142 7 3 chr12 89151781 89152070 -55130419 - AluSx SINE Alu -22 290 1 2665 189 39 40 chr12 89152070 89152575 -55129914 + L1MB7 LINE L1 5347 5864 -320 2022 135 0 0 chr12 89152756 89153052 -55129437 + AluY SINE Alu 1 296 -15 28 71 0 0 chr12 89153062 89153118 -55129371 + AT_rich Low_complexity Low_complexity 1 56 0 7295 41 0 3 chr12 89153131 89154487 -55128002 - L1PA6 LINE L1 -3 6151 4802 1402 189 14 42 chr12 89154563 89154849 -55127640 - AluJo SINE Alu -22 290 13 249 300 12 0 chr12 89154929 89155009 -55127480 - MIR SINE MIR -3 259 179 292 342 5 57 chr12 89155129 89155322 -55127167 + MIR3 SINE MIR 20 202 -6 284 241 9 45 chr12 89155342 89155454 -55127035 + (CATATA)n Simple_repeat Simple_repeat 5 112 0 1232 179 24 0 chr12 89157820 89158027 -55124462 - MER20 DNA MER1_type 0 219 8 21 57 0 0 chr12 89160315 89160350 -55122139 + AT_rich Low_complexity Low_complexity 1 35 0 1773 169 20 3 chr12 89160379 89160680 -55121809 + AluJb SINE Alu 1 306 -6 23 0 0 0 chr12 89160716 89160739 -55121750 + AT_rich Low_complexity Low_complexity 1 23 0 271 304 56 37 chr12 89160952 89161113 -55121376 + MIR SINE MIR 83 246 -16 245 224 0 0 chr12 89161586 89161635 -55120854 + L2 LINE L2 3265 3313 0 9709 184 53 47 chr12 89161933 89164242 -55118247 - Tigger5 DNA MER2_type 0 2323 1 312 306 24 16 chr12 89165747 89165871 -55116618 + MIR3 SINE MIR 83 207 -1 878 214 36 59 chr12 89166032 89166095 -55116394 + MER58A DNA MER1_type 1 64 -2356 2117 106 0 20 chr12 89166095 89166396 -55116093 - AluSc SINE Alu -14 295 1 878 214 36 59 chr12 89166396 89166552 -55115937 + MER58A DNA MER1_type 64 215 -9 270 0 0 0 chr12 89166638 89166668 -55115821 + (TG)n Simple_repeat Simple_repeat 2 31 0 2096 199 18 10 chr12 89166776 89167164 -55115325 - MLT2B2 LTR ERVL 0 515 125 1332 201 15 15 chr12 89167267 89167526 -55114963 - MLT1A1 LTR MaLR -70 295 37 184 0 62 31 chr12 89167530 89167562 -55114927 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 607 174 0 83 chr12 89167590 89167637 -55114852 - MLT2B2 LTR ERVL -383 132 83 2548 68 0 0 chr12 89167637 89167948 -55114541 + AluY SINE Alu 1 311 0 607 174 0 83 chr12 89167948 89168044 -55114445 - MLT2B2 LTR ERVL -432 83 1 1943 133 7 0 chr12 89168280 89168565 -55113924 - AluSx SINE Alu -25 287 1 2400 63 0 32 chr12 89170897 89171212 -55111277 + AluY SINE Alu 1 305 -6 30377 119 12 55 chr12 89171432 89177859 -55104630 - L1PA7 LINE L1 0 6154 12 189 0 0 0 chr12 89177906 89177927 -55104562 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 6731 78 0 0 chr12 89177929 89179270 -55103219 - L1PA4 LINE L1 -3 6152 4814 1972 144 3 0 chr12 89179270 89179562 -55102927 - AluSc SINE Alu -16 293 1 183 46 0 13 chr12 89179874 89179994 -55102495 + AT_rich Low_complexity Low_complexity 1 121 -179 2046 13 0 0 chr12 89179994 89180220 -55102269 - AluY SINE Alu 0 311 86 183 46 0 13 chr12 89180220 89180436 -55102053 + AT_rich Low_complexity Low_complexity 121 300 0 111 91 0 0 chr12 89180413 89180756 -55101733 + AT_rich Low_complexity Low_complexity 1 297 0 * 977 112 40 0 chr12 89180756 89180908 -55101581 + L1P4 LINE L1 5529 5686 -488 5021 113 11 4 chr12 89181298 89182050 -55100439 - L1PA10 LINE L1 -1 6167 5411 591 225 33 20 chr12 89282725 89282876 -54999613 + MER2 DNA MER2_type 1 153 -192 331 227 27 0 chr12 89282945 89283020 -54999469 + MER2 DNA MER2_type 269 345 0 1110 133 6 11 chr12 89283151 89283332 -54999157 - THE1A-int LTR MaLR -1108 472 293 969 200 107 0 chr12 89283343 89283558 -54998931 - MLT2A1 LTR ERVL 0 444 207 1575 143 22 0 chr12 89283558 89283830 -54998659 - THE1A-int LTR MaLR -1299 281 4 1986 169 6 0 chr12 89283833 89284181 -54998308 - THE1A LTR MaLR 0 355 6 425 242 152 0 chr12 89285148 89285280 -54997209 + MIR SINE MIR 97 248 -14 412 167 78 0 chr12 89285307 89285397 -54997092 - L1MA7 LINE L1 -7 6284 6188 502 103 28 47 chr12 89285398 89285505 -54996984 - L1MA8 LINE L1 -200 6091 5987 9244 88 10 5 chr12 89285606 89286973 -54995516 + L1P LINE L1 2001 3374 -2772 1315 333 99 41 chr12 89288492 89289585 -54992904 + L2 LINE L2 883 2038 -1276 189 0 0 0 chr12 89289596 89289617 -54992872 + (TAA)n Simple_repeat Simple_repeat 3 23 0 1801 104 0 4 chr12 89289617 89289890 -54992599 - L1PA2 LINE L1 -11 6144 5873 553 262 63 15 chr12 89289997 89290379 -54992110 - L1M4 LINE L1 -3685 2697 2079 21 0 0 0 chr12 89290413 89290434 -54992055 + AT_rich Low_complexity Low_complexity 1 21 0 1366 281 106 13 chr12 89290497 89290859 -54991630 - L1M4 LINE L1 -4543 1841 1409 354 23 0 0 chr12 89290859 89290902 -54991587 + (TG)n Simple_repeat Simple_repeat 2 44 0 1366 281 106 13 chr12 89290902 89291088 -54991401 - L1M4 LINE L1 -4975 1409 1242 951 190 5 5 chr12 89291189 89291373 -54991116 + THE1A LTR MaLR 172 355 0 7816 130 8 2 chr12 89291373 89292550 -54989939 + THE1A-int LTR MaLR 1 1185 -395 4274 244 45 13 chr12 89294480 89296033 -54986456 + L1PBa LINE L1 2522 4201 -2661 628 224 0 20 chr12 89296059 89296206 -54986283 + AluSq/x SINE Alu 1 144 -169 3994 138 3 8 chr12 89296329 89296947 -54985542 - HERVL LTR ERVL -4526 1128 514 243 181 83 14 chr12 89296966 89297038 -54985451 + L2 LINE L2 2188 2264 -1050 2711 88 6 0 chr12 89298716 89299069 -54983420 - THE1A LTR MaLR 0 355 1 11364 101 7 1 chr12 89299069 89300640 -54981849 - THE1A-int LTR MaLR 0 1580 1 2595 102 6 0 chr12 89300640 89300993 -54981496 - THE1A LTR MaLR 0 355 1 286 270 84 79 chr12 89301766 89301944 -54980545 + MLT1F LTR MaLR 136 314 -235 353 176 48 0 chr12 89302000 89302083 -54980406 + MLT1F LTR MaLR 454 547 -2 1376 174 116 61 chr12 89302205 89302549 -54979940 - MLT1A1 LTR MaLR -2 363 1 1623 207 130 18 chr12 89302647 89303048 -54979441 + MLT1C LTR MaLR 15 460 -7 268 224 0 0 chr12 89303370 89303419 -54979070 + Tigger1 DNA MER2_type 1 49 -2369 5750 146 46 1 chr12 89303873 89304850 -54977639 + Tigger1 DNA MER2_type 63 1083 -1335 4542 148 10 1 chr12 89304851 89305574 -54976915 + Tigger1 DNA MER2_type 1476 2204 -214 246 366 11 0 chr12 89307315 89307408 -54975081 + L2 LINE L2 3220 3313 0 320 267 23 122 chr12 89307817 89307948 -54974541 - L2 LINE L2 -1 3271 3154 639 224 43 31 chr12 89309362 89309523 -54972966 - MER45 DNA AcHobo -1 1580 1418 2535 221 14 16 chr12 89309528 89310036 -54972453 - MER45B DNA AcHobo -533 507 1 1745 207 8 22 chr12 89310147 89310505 -54971984 + MLT1A1 LTR MaLR 1 353 -12 228 306 16 0 chr12 89310702 89310764 -54971725 - L2 LINE L2 -5 3308 3246 784 325 127 28 chr12 89310865 89311392 -54971097 - L2 LINE L2 0 3313 2723 230 225 0 23 chr12 89311857 89311922 -54970567 + MER5A DNA MER1_type 4 66 -123 5379 159 20 13 chr12 89311928 89313211 -54969278 + L1MA4A LINE L1 4924 6211 -92 210 136 0 0 chr12 89313312 89313356 -54969133 + (CA)n Simple_repeat Simple_repeat 2 45 0 6067 159 52 7 chr12 89313371 89315571 -54966918 + L1MA3 LINE L1 4017 6305 0 21 0 0 0 chr12 89315922 89315943 -54966546 + AT_rich Low_complexity Low_complexity 1 21 0 802 127 0 14 chr12 89316664 89316806 -54965683 + (GAAA)n Simple_repeat Simple_repeat 4 143 0 697 194 0 8 chr12 89316864 89317036 -54965453 + FLAM_C SINE Alu 1 171 0 1775 254 46 48 chr12 89317075 89317662 -54964827 + L1MA4A LINE L1 22 607 -6958 664 43 0 21 chr12 89317765 89317859 -54964630 + (GAAA)n Simple_repeat Simple_repeat 3 94 0 648 201 8 15 chr12 89317922 89318094 -54964395 + FLAM_C SINE Alu 1 171 0 17787 188 53 17 chr12 89318117 89322290 -54960199 + L1MB1 LINE L1 9 4391 -3174 2204 113 0 6 chr12 89322290 89322601 -54959888 + AluY SINE Alu 1 309 -2 17787 188 53 17 chr12 89322601 89323352 -54959137 + L1MB1 LINE L1 4391 5113 -2452 1695 178 162 5 chr12 89323366 89323736 -54958753 - MSTA LTR MaLR 0 428 1 4292 152 26 31 chr12 89323736 89324512 -54957977 - MSTA-int LTR MaLR 0 1580 809 11730 33 5 0 chr12 89324794 89326981 -54955508 - L1PA4 LINE L1 -3 6152 3959 378 0 0 0 chr12 89327026 89327068 -54955421 + (CA)n Simple_repeat Simple_repeat 2 43 0 1434 176 34 62 chr12 89327284 89327637 -54954852 - L1MA10 LINE L1 -43 6291 5949 * 2418 202 54 11 chr12 89327629 89328650 -54953839 + L1MB1 LINE L1 6185 7248 -360 13105 200 91 14 chr12 89328664 89332612 -54949877 + L1MA4A LINE L1 720 5390 -2332 204 40 0 0 chr12 89332612 89332637 -54949852 + (CAA)n Simple_repeat Simple_repeat 3 27 0 13105 200 91 14 chr12 89332637 89335167 -54947322 + L1MA4A LINE L1 5390 7722 0 758 172 30 0 chr12 89335173 89335307 -54947182 + L1MB1 LINE L1 7238 7375 -233 288 295 74 27 chr12 89336799 89336948 -54945541 + MIR SINE MIR 81 236 -26 225 0 0 0 chr12 89338108 89338133 -54944356 + (TA)n Simple_repeat Simple_repeat 1 25 0 842 212 65 16 chr12 89338276 89338460 -54944029 + MER20 DNA MER1_type 27 219 0 2420 27 40 10 chr12 89339655 89339952 -54942537 + AluY SINE Alu 1 306 -5 477 262 9 0 chr12 89341018 89341125 -54941364 - MER70B LTR ERVL -17 561 454 1098 332 86 6 chr12 89342699 89343187 -54939302 - L2 LINE L2 -1577 1737 1211 1991 118 57 0 chr12 89343572 89343851 -54938638 - AluSg SINE Alu -15 295 1 1200 178 88 149 chr12 89343998 89344441 -54938048 - MER47B DNA MER2_type -1 417 2 23 54 0 0 chr12 89345279 89345316 -54937173 + AT_rich Low_complexity Low_complexity 1 37 0 300 53 0 0 chr12 89346200 89346238 -54936251 + (TG)n Simple_repeat Simple_repeat 1 38 0 251 241 205 30 chr12 89346400 89346566 -54935923 - L1ME LINE L1 -436 5730 5536 303 278 89 83 chr12 89346585 89346688 -54935801 + L2 LINE L2 2645 2746 -568 1497 156 45 112 chr12 89346688 89347106 -54935383 - MLT1B LTR MaLR 0 390 1 303 278 89 83 chr12 89347106 89347326 -54935163 + L2 LINE L2 2746 2970 -344 212 0 36 0 chr12 89347502 89347530 -54934959 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2122 100 21 0 chr12 89347533 89347813 -54934676 - AluSg SINE Alu -24 286 1 319 233 100 0 chr12 89347867 89347957 -54934532 - MLT1D LTR MaLR 0 626 528 1097 202 79 5 chr12 89347996 89348292 -54934197 - MLT1D LTR MaLR -152 353 1 349 295 57 48 chr12 89348400 89348627 -54933862 - L1ME LINE L1 -2320 5488 5260 1455 129 9 0 chr12 89348835 89349045 -54933444 - AluSg/x SINE Alu -8 304 93 840 259 186 39 chr12 89349331 89349771 -54932718 + MLT1C LTR MaLR 1 467 0 939 252 33 0 chr12 89350295 89350509 -54931980 + MER58A DNA MER1_type 4 224 0 183 273 45 0 chr12 89350625 89350669 -54931820 + L3 LINE CR1 262 307 -1270 23 54 0 0 chr12 89350983 89351020 -54931469 + AT_rich Low_complexity Low_complexity 1 37 0 277 221 21 84 chr12 89351369 89351464 -54931025 - MLT1K LTR MaLR 0 588 500 561 187 65 0 chr12 89351988 89352095 -54930394 + FLAM_A SINE Alu 2 115 -18 2212 196 21 2 chr12 89353227 89353651 -54928838 + MSTB1 LTR MaLR 1 432 0 316 289 0 34 chr12 89353654 89353807 -54928682 - MLT1I LTR MaLR -232 208 66 213 255 43 0 chr12 89354270 89354317 -54928172 + MIR3 SINE MIR 106 154 -54 383 246 130 7 chr12 89354540 89354678 -54927811 + L1ME2 LINE L1 6000 6154 -10 1086 222 72 6 chr12 89354712 89355183 -54927306 + MER34 LTR ERV1 11 531 -11 1614 270 208 14 chr12 89355295 89356200 -54926289 + L1MC4 LINE L1 6615 7671 -137 2043 180 46 43 chr12 89356200 89356595 -54925894 - LOR1b LTR ERV1 0 461 63 2314 100 0 3 chr12 89356595 89356896 -54925593 - AluSc SINE Alu -6 303 4 2043 180 46 43 chr12 89356896 89356960 -54925529 - LOR1b LTR ERV1 -398 63 1 1614 270 208 14 chr12 89356960 89357014 -54925475 + L1MC4 LINE L1 7671 7713 -95 185 289 0 0 chr12 89358298 89358336 -54924153 + MIR SINE MIR 111 148 -114 467 240 102 79 chr12 89358473 89358727 -54923762 + L1MC4 LINE L1 7751 8010 -32 1446 143 99 57 chr12 89358760 89359074 -54923415 + L1MA9 LINE L1 5697 6023 -289 995 180 123 19 chr12 89359085 89359530 -54922959 + MER34 LTR ERV1 27 542 0 975 193 80 47 chr12 89359539 89359814 -54922675 + L1MA9 LINE L1 6029 6312 0 763 325 92 30 chr12 89359916 89359934 -54922555 + HERV16 LTR ERVL 1749 1764 -3232 1564 163 30 0 chr12 89359934 89360198 -54922291 - AluSq SINE Alu -41 272 1 763 325 92 30 chr12 89360198 89360709 -54921780 + HERV16 LTR ERVL 1764 2311 -2685 1234 256 58 34 chr12 89360808 89361219 -54921270 - MLT1E LTR MaLR -11 582 162 2135 180 39 5 chr12 89361222 89361729 -54920760 - LTR69 LTR ERVL -2 586 1 436 244 174 9 chr12 89361764 89361879 -54920610 - MLT1E LTR MaLR -450 143 10 456 155 0 0 chr12 89362052 89362123 -54920366 + AluY SINE Alu 45 115 -196 * 678 128 0 0 chr12 89362117 89362219 -54920270 + AluSg/x SINE Alu 195 296 -16 298 240 0 0 chr12 89362219 89362294 -54920195 + L1ME LINE L1 5759 5833 -337 24 67 0 0 chr12 89362736 89362781 -54919708 + AT_rich Low_complexity Low_complexity 1 45 0 2123 150 14 3 chr12 89362802 89363163 -54919326 - L1PB1 LINE L1 -4 6147 5783 234 325 48 0 chr12 89363166 89363249 -54919240 + L1MC4 LINE L1 6615 6701 -1341 186 189 0 0 chr12 89363251 89363288 -54919201 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 14310 192 25 10 chr12 89363292 89365581 -54916908 - L1P5 LINE L1 -358 6509 4062 1784 153 0 43 chr12 89365581 89365882 -54916607 - AluSq SINE Alu -25 288 1 14310 192 25 10 chr12 89365882 89367447 -54915042 - L1P5 LINE L1 -2805 4062 2522 252 163 0 20 chr12 89367636 89367685 -54914804 + MER116 DNA Mariner 33 80 0 191 343 0 27 chr12 89369455 89369528 -54912961 + L2 LINE L2 2568 2638 -676 2262 93 0 3 chr12 89370789 89371090 -54911399 + AluY SINE Alu 1 300 -11 183 80 0 0 chr12 89371151 89371176 -54911313 + (T)n Simple_repeat Simple_repeat 1 25 0 12991 90 22 15 chr12 89371203 89373924 -54908565 - L1PA7 LINE L1 -3 6151 3414 1773 163 24 3 chr12 89374111 89374399 -54908090 - AluSx SINE Alu -18 294 1 544 66 26 0 chr12 89375965 89376041 -54906448 - L1PA4 LINE L1 -20 6135 6058 844 94 8 0 chr12 89376142 89376270 -54906219 - L1M1 LINE L1 -842 5461 5333 323 136 45 0 chr12 89376270 89376323 -54906166 + L1MA4A LINE L1 6229 6297 -6 2281 220 59 33 chr12 89376588 89377128 -54905361 + MER68 LTR ERV1 1 554 -8 2277 133 11 19 chr12 89377494 89377861 -54904628 - THE1B LTR MaLR 0 364 1 5668 100 13 7 chr12 89380082 89380913 -54901576 + L1PA13 LINE L1 5322 6157 -6 191 304 0 0 chr12 89381662 89381708 -54900781 + MIR SINE MIR 81 126 -136 189 308 0 0 chr12 89383024 89383076 -54899413 - MIR SINE MIR 0 262 211 2147 248 33 57 chr12 89383261 89383995 -54898494 + L1MEc LINE L1 83 798 -5598 354 187 33 33 chr12 89384095 89384186 -54898303 + L1MDa LINE L1 21 111 -6429 468 189 33 0 chr12 89384188 89384278 -54898211 - Tigger5 DNA MER2_type 0 2323 2231 346 230 0 14 chr12 89384326 89384400 -54898089 - Tigger5 DNA MER2_type 0 2323 2251 314 257 0 64 chr12 89384402 89384511 -54897978 + L1MDa LINE L1 95 196 -6344 265 194 0 122 chr12 89387370 89387445 -54895044 + MER63 DNA MER1_type 1 689 -373 311 178 0 0 chr12 89387445 89387490 -54894999 + MER2 DNA MER2_type 1 45 -300 1207 105 22 48 chr12 89387684 89387913 -54894576 + L1P LINE L1 3189 3411 -2735 483 267 100 69 chr12 89387960 89388086 -54894403 - MLT1J2 LTR MaLR -21 429 308 505 200 0 0 chr12 89388086 89388181 -54894308 - MER34 LTR ERV1 -447 95 1 483 267 100 69 chr12 89388181 89388348 -54894141 - MLT1J2 LTR MaLR -142 308 54 241 304 97 48 chr12 89388493 89388700 -54893789 + L2 LINE L2 2955 3171 -142 33 0 0 0 chr12 89388884 89388917 -54893572 + AT_rich Low_complexity Low_complexity 1 33 0 234 278 119 46 chr12 89389570 89389721 -54892768 + MIR SINE MIR 49 210 -52 206 258 0 15 chr12 89389808 89389874 -54892615 + T-rich Low_complexity Low_complexity 3 67 0 21 0 0 0 chr12 89390826 89390847 -54891642 + AT_rich Low_complexity Low_complexity 1 21 0 262 193 0 64 chr12 89391916 89392025 -54890464 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 247 333 93 31 chr12 89392867 89392996 -54889493 - MIR SINE MIR -69 193 57 395 309 98 21 chr12 89394447 89394641 -54887848 + MIR SINE MIR 42 250 -12 180 0 0 0 chr12 89395306 89395326 -54887163 + (CA)n Simple_repeat Simple_repeat 1 20 0 292 342 176 10 chr12 89395545 89395744 -54886745 - MIR SINE MIR -10 252 21 392 250 90 28 chr12 89396731 89396875 -54885614 - MER5A DNA MER1_type 0 189 37 256 318 86 20 chr12 89397058 89397209 -54885280 - MLT1I LTR MaLR -4 405 245 226 316 125 13 chr12 89397264 89397416 -54885073 - MLT1I LTR MaLR -240 169 1 341 340 129 10 chr12 89397461 89397655 -54884834 + MIR SINE MIR 46 262 0 205 340 53 34 chr12 89397739 89397945 -54884544 - L2 LINE L2 -2 3311 3102 341 127 70 0 chr12 89399259 89399330 -54883159 + L1MC2 LINE L1 6269 6344 0 256 235 0 0 chr12 89400947 89400998 -54881491 - MLT1E1 LTR MaLR 0 654 604 2153 221 105 42 chr12 89401043 89401635 -54880854 - MLT1E1 LTR MaLR -25 629 1 186 258 140 70 chr12 89403995 89404181 -54878308 + L2 LINE L2 3114 3312 -1 1605 197 64 29 chr12 89404241 89404616 -54877873 - MLT1B LTR MaLR -2 388 1 2556 98 24 11 chr12 89404836 89405205 -54877284 + THE1C LTR MaLR 1 374 -1 8464 195 89 18 chr12 89405564 89408995 -54873494 - L1MA4 LINE L1 -13 6469 539 463 388 36 27 chr12 89409238 89409681 -54872808 - L1M3a LINE L1 -5508 447 1 1857 121 35 0 chr12 89409855 89410144 -54872345 + AluSc SINE Alu 1 299 -10 1928 172 26 26 chr12 89410598 89410924 -54871565 + MLT1B LTR MaLR 1 329 -61 2823 6 0 3 chr12 89410924 89411235 -54871254 - AluYa5 SINE Alu -1 310 1 1928 172 26 26 chr12 89411235 89411297 -54871192 + MLT1B LTR MaLR 328 389 -1 1867 194 82 2 chr12 89411349 89411751 -54870738 - Tigger2a DNA MER2_type 0 434 1 453 151 32 11 chr12 89411980 89412073 -54870416 + L1ME1 LINE L1 5892 5986 -180 785 183 27 89 chr12 89412139 89412363 -54870126 + MER6B DNA MER2_type 1 210 0 14182 68 16 13 chr12 89412896 89415631 -54866858 - L1PA4 LINE L1 -3 6152 3414 1815 160 24 3 chr12 89415818 89416106 -54866383 - AluSx SINE Alu -18 294 1 28072 42 9 1 chr12 89417671 89421934 -54860555 - L1PA4 LINE L1 -20 6135 1844 41191 41 30 2 chr12 89423112 89429091 -54853398 - L1PA2 LINE L1 0 6155 1 428 326 67 8 chr12 89430104 89430343 -54852146 - MLT1L LTR MaLR -19 596 344 360 345 21 7 chr12 89431257 89431399 -54851090 + LTR16A LTR ERVL 305 448 -2 309 296 59 59 chr12 89431482 89431668 -54850821 - L2 LINE L2 0 3313 3128 913 308 58 29 chr12 89431688 89432032 -54850457 - L2 LINE L2 -979 2335 1982 319 314 154 6 chr12 89432694 89432850 -54849639 - MIR SINE MIR -79 183 5 705 238 155 0 chr12 89434172 89434353 -54848136 + MER3 DNA MER1_type 1 209 0 652 372 166 11 chr12 89434845 89435887 -54846602 - L2 LINE L2 -339 2975 1772 6022 83 64 11 chr12 89435898 89436916 -54845573 + L1PA8A LINE L1 5026 6125 -6 420 322 70 10 chr12 89437076 89437275 -54845214 + MIR SINE MIR 49 259 -3 367 354 48 37 chr12 89437361 89437632 -54844857 + L2 LINE L2 2639 2912 -402 666 269 151 14 chr12 89437770 89437989 -54844500 + MIR SINE MIR 12 260 -2 1169 233 81 50 chr12 89441205 89441352 -54841137 + MSTD LTR MaLR 1 142 -254 7788 19 0 0 chr12 89441352 89442858 -54839631 - L1PA3 LINE L1 -4 6151 4646 1169 233 81 50 chr12 89442858 89443092 -54839397 + MSTD LTR MaLR 142 394 -2 1426 218 57 72 chr12 89443897 89444370 -54838119 + MER31B LTR ERV1 1 466 0 505 138 0 0 chr12 89444878 89444958 -54837531 - MADE1 DNA Mariner 0 80 1 1328 197 48 115 chr12 89445442 89445948 -54836541 - MLT1C LTR MaLR 0 505 3 602 303 83 58 chr12 89447792 89448155 -54834334 + L2 LINE L2 2942 3313 0 6707 63 17 2 chr12 89448459 89449828 -54832661 + L1PA7 LINE L1 4762 6149 -5 377 256 109 87 chr12 89450063 89450161 -54832328 + L1M4 LINE L1 2342 2436 -3710 2331 90 0 10 chr12 89450161 89450473 -54832016 + AluSc SINE Alu 1 309 0 377 256 109 87 chr12 89450473 89450959 -54831530 + L1M4 LINE L1 2436 2939 -3207 655 305 184 30 chr12 89450963 89451798 -54830691 + L1M4 LINE L1 2973 3936 -2210 261 283 44 9 chr12 89452659 89452772 -54829717 + L1M4 LINE L1 4886 5002 -1144 2399 105 14 3 chr12 89455062 89455414 -54827075 + L1PA14 LINE L1 5792 6147 -14 616 300 53 18 chr12 89455495 89455722 -54826767 + MLT1C LTR MaLR 233 467 0 513 313 90 0 chr12 89456153 89456319 -54826170 + MER5A DNA MER1_type 3 183 -6 7469 178 18 27 chr12 89456323 89457754 -54824735 + L1PA6 LINE L1 1 1418 -4728 33497 52 3 1 chr12 89457754 89463902 -54818587 + L1PA4 LINE L1 1 6155 0 29068 76 5 1 chr12 89463903 89468632 -54813857 + L1PA6 LINE L1 1408 6150 -4 878 333 106 22 chr12 89468880 89469860 -54812629 - L2 LINE L2 -19 3294 2227 349 141 0 0 chr12 89470197 89470261 -54812228 - L1MA9 LINE L1 -5 6307 6244 243 0 0 0 chr12 89470268 89470295 -54812194 + (CA)n Simple_repeat Simple_repeat 2 28 0 957 188 61 44 chr12 89470312 89470541 -54811948 - L1MA9 LINE L1 -159 6153 5921 186 143 0 0 chr12 89471486 89471521 -54810968 + (GA)n Simple_repeat Simple_repeat 2 36 0 256 179 209 0 chr12 89472466 89472533 -54809956 - MLT1J2 LTR MaLR -364 86 6 2063 129 0 0 chr12 89472745 89473025 -54809464 + AluSg SINE Alu 1 280 -30 234 0 0 0 chr12 89473038 89473064 -54809425 + (CA)n Simple_repeat Simple_repeat 2 27 0 314 317 0 10 chr12 89473064 89473165 -54809324 - L1MC4 LINE L1 -1339 6703 6604 461 260 75 20 chr12 89474798 89474944 -54807545 + MIR SINE MIR 16 169 -93 825 244 64 45 chr12 89474944 89475255 -54807234 + LTR28 LTR ERV1 1 317 -703 562 252 18 50 chr12 89475257 89475429 -54807060 + MER52A LTR ERV1 335 1231 -29 226 316 42 21 chr12 89475651 89475746 -54806743 - L2 LINE L2 -5 3308 3212 262 299 104 37 chr12 89475882 89476016 -54806473 - MIR SINE MIR -54 208 66 327 303 74 16 chr12 89476219 89476341 -54806148 - MER5B DNA MER1_type -46 132 4 543 193 203 21 chr12 89476724 89477014 -54805475 - MER69 DNA AcHobo -3 2523 2181 1574 293 46 6 chr12 89477040 89477541 -54804948 - MER69 DNA AcHobo -598 628 108 588 253 53 0 chr12 89477710 89477860 -54804629 - MIR SINE MIR -43 219 62 290 228 0 0 chr12 89478969 89479026 -54803463 - L2 LINE L2 -3 3310 3254 623 274 163 12 chr12 89481722 89481967 -54800522 + L2 LINE L2 3032 3313 0 1906 143 10 3 chr12 89482023 89482317 -54800172 + AluSg SINE Alu 1 296 -14 186 133 0 0 chr12 89483304 89483334 -54799155 + (T)n Simple_repeat Simple_repeat 1 30 0 241 244 116 35 chr12 89483334 89483420 -54799069 - MIR SINE MIR -91 171 79 2049 33 0 0 chr12 89483436 89483681 -54798808 - L1PA5 LINE L1 -2 6152 5908 228 292 45 34 chr12 89485189 89485278 -54797211 + MIR3 SINE MIR 83 172 -36 333 132 0 29 chr12 89485377 89485445 -54797044 + L1MA1 LINE L1 6237 6302 0 23 0 0 0 chr12 89486069 89486092 -54796397 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr12 89486432 89486469 -54796020 + AT_rich Low_complexity Low_complexity 1 37 0 2836 334 53 24 chr12 89486972 89488088 -54794401 + L2 LINE L2 865 1946 -1367 246 32 0 0 chr12 89488088 89488119 -54794370 + (TTA)n Simple_repeat Simple_repeat 3 33 0 5011 9 0 0 chr12 89488119 89488680 -54793809 - L1PA2 LINE L1 -18 6137 5577 2836 334 53 24 chr12 89488680 89489538 -54792951 + L2 LINE L2 1945 3077 -236 24 53 0 0 chr12 89490120 89490158 -54792331 + AT_rich Low_complexity Low_complexity 1 38 0 246 216 68 0 chr12 89490360 89490448 -54792041 - L1 LINE L1 -2886 4679 4586 17046 97 19 5 chr12 89490455 89493374 -54789115 - L1PA7 LINE L1 -13 6456 3579 222 91 0 0 chr12 89493374 89493407 -54789082 + (TTG)n Simple_repeat Simple_repeat 1 33 0 17046 97 19 5 chr12 89493407 89493749 -54788740 - L1PA7 LINE L1 -2890 3579 3155 1942 139 7 3 chr12 89493749 89494044 -54788445 - AluY SINE Alu -15 296 1 17046 97 19 5 chr12 89494044 89494110 -54788379 - L1PA7 LINE L1 -3314 3155 3091 6715 121 109 153 chr12 89494110 89495885 -54786604 + pTR5 LTR ERV1 743 2438 0 1077 117 12 0 chr12 89495888 89496051 -54786438 - L1PA7 LINE L1 -3367 3094 2930 * 6546 158 2 17 chr12 89496050 89497225 -54785264 - L1PA7 LINE L1 -3912 2549 1393 1035 115 0 0 chr12 89497227 89497366 -54785123 - L1PA7 LINE L1 -6322 139 1 17100 186 57 28 chr12 89497371 89501820 -54780669 - L1 LINE L1 -2972 4593 16 1517 81 14 9 chr12 89501854 89502077 -54780412 - L1PA6 LINE L1 -2 6152 5929 641 279 70 37 chr12 89502273 89502545 -54779944 + MER68 LTR ERV1 236 516 -46 21 0 0 0 chr12 89502592 89502613 -54779876 + AT_rich Low_complexity Low_complexity 1 21 0 384 275 28 18 chr12 89502918 89503027 -54779462 + MLT1H LTR MaLR 177 286 -263 348 198 16 40 chr12 89503140 89503266 -54779223 + T-rich Low_complexity Low_complexity 1 123 0 31372 115 12 57 chr12 89503267 89509717 -54772772 - L1PA7 LINE L1 0 6154 12 273 213 16 0 chr12 89509728 89509789 -54772700 + MLT1H LTR MaLR 488 549 0 1990 152 0 0 chr12 89509899 89510189 -54772300 + AluSq SINE Alu 1 290 -23 25 0 0 0 chr12 89511189 89511214 -54771275 + AT_rich Low_complexity Low_complexity 1 25 0 2140 120 3 0 chr12 89511218 89511510 -54770979 - AluSx SINE Alu -19 293 1 219 254 56 0 chr12 89511851 89511922 -54770567 - MIR SINE MIR -96 166 92 258 351 137 14 chr12 89512594 89512805 -54769684 - L2 LINE L2 -219 3053 2817 246 301 66 108 chr12 89512966 89513132 -54769357 + MIR SINE MIR 49 207 -55 227 0 0 83 chr12 89514425 89514461 -54768028 + (T)n Simple_repeat Simple_repeat 1 33 0 7500 29 0 0 chr12 89514465 89516074 -54766415 - L1HS LINE L1 0 6155 4547 22443 41 45 4 chr12 89516077 89518937 -54763552 + L1P LINE L1 235 3211 -2935 24 53 0 0 chr12 89519342 89519380 -54763109 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr12 89519509 89519532 -54762957 + AT_rich Low_complexity Low_complexity 1 23 0 181 250 0 0 chr12 89520224 89520260 -54762229 - MER5B DNA MER1_type -15 163 128 22 0 0 0 chr12 89520368 89520390 -54762099 + AT_rich Low_complexity Low_complexity 1 22 0 1008 232 30 9 chr12 89520666 89520899 -54761590 - MER8 DNA MER2_type -1 238 1 27 0 0 0 chr12 89521696 89521723 -54760766 + AT_rich Low_complexity Low_complexity 1 27 0 411 200 0 0 chr12 89521784 89521864 -54760625 - MER116 DNA Mariner 0 80 1 415 370 7 0 chr12 89522040 89522178 -54760311 - L2 LINE L2 0 3272 3134 322 296 38 30 chr12 89522398 89522530 -54759959 - MIR SINE MIR -89 173 41 2563 191 126 23 chr12 89523519 89524231 -54758258 - LTR1B LTR ERV1 0 785 1 416 271 65 18 chr12 89524823 89524993 -54757496 + L1ME3A LINE L1 5593 5770 -400 1077 261 33 7 chr12 89524999 89525302 -54757187 + L1ME3A LINE L1 5836 6146 -24 373 320 56 0 chr12 89525514 89525639 -54756850 + MIR SINE MIR 31 162 -100 483 269 22 8 chr12 89525751 89525885 -54756604 + MER63A DNA MER1_type 75 210 0 294 333 18 9 chr12 89526630 89526741 -54755748 + MIR SINE MIR 1 112 -150 464 299 187 31 chr12 89526746 89527131 -54755358 + MLT1J2 LTR MaLR 6 450 0 477 111 0 0 chr12 89527336 89527408 -54755081 - AluSp/q SINE Alu -12 301 230 1691 230 52 78 chr12 89527883 89528523 -54753966 - MLT1E2 LTR MaLR -3 623 1 1858 168 56 48 chr12 89528724 89529117 -54753372 - MSTB1 LTR MaLR -15 417 22 1560 164 21 11 chr12 89529117 89529397 -54753092 + AluJb SINE Alu 30 312 0 21 36 0 0 chr12 89529443 89529471 -54753018 + AT_rich Low_complexity Low_complexity 1 28 0 289 325 89 36 chr12 89529498 89529778 -54752711 - L2 LINE L2 0 3313 3019 548 215 122 13 chr12 89531484 89531641 -54750848 + MIR SINE MIR 73 248 -14 1269 112 50 22 chr12 89531668 89531989 -54750500 - L1MA8 LINE L1 -7 6284 5856 25 51 0 0 chr12 89532006 89532045 -54750444 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr12 89532170 89532195 -54750294 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr12 89532958 89532980 -54749509 + (A)n Simple_repeat Simple_repeat 1 22 0 26 50 0 0 chr12 89533810 89533850 -54748639 + AT_rich Low_complexity Low_complexity 1 40 0 717 303 108 70 chr12 89537073 89537657 -54744832 + L2 LINE L2 2196 2801 -513 334 378 47 0 chr12 89537735 89537928 -54744561 + L2 LINE L2 2899 3100 -213 563 302 58 21 chr12 89537931 89538173 -54744316 + MIR SINE MIR 2 252 -10 181 290 39 77 chr12 89538170 89538377 -54744112 + L2 LINE L2 3111 3309 -4 * 736 309 54 81 chr12 89540817 89540911 -54741578 + MLT1K LTR MaLR 58 153 -435 1657 188 21 43 chr12 89540911 89541284 -54741205 + MLT1A1 LTR MaLR 1 365 0 736 309 54 81 chr12 89541284 89541707 -54740782 + MLT1K LTR MaLR 153 561 -27 953 191 23 0 chr12 89542579 89542755 -54739734 + MLT1E LTR MaLR 9 175 -418 786 193 324 0 chr12 89542858 89543065 -54739424 + MLT1E LTR MaLR 320 593 0 190 357 45 0 chr12 89545254 89545366 -54737123 + L2 LINE L2 3190 3306 -7 1488 203 116 66 chr12 89545966 89546405 -54736084 - MLT1C LTR MaLR -1 466 6 1682 217 3 9 chr12 89546840 89547177 -54735312 - MLT1A1 LTR MaLR -19 346 12 188 269 109 86 chr12 89548537 89548712 -54733777 + L3 LINE CR1 1399 1577 0 23 54 0 0 chr12 89548939 89548976 -54733513 + AT_rich Low_complexity Low_complexity 1 37 0 221 345 18 9 chr12 89550932 89551042 -54731447 - L2 LINE L2 -1 3312 3202 666 203 37 6 chr12 89551203 89551366 -54731123 + MLT2D LTR ERVL 1 168 -246 26 30 0 0 chr12 89552344 89552377 -54730112 + AT_rich Low_complexity Low_complexity 1 33 0 593 51 0 0 chr12 89552467 89552546 -54729943 + L1MA1 LINE L1 6220 6298 -4 184 191 71 0 chr12 89552586 89552628 -54729861 + L2 LINE L2 3229 3273 -40 400 336 113 14 chr12 89552858 89553212 -54729277 + L1M4 LINE L1 492 880 -5662 2537 108 8 0 chr12 89553267 89553619 -54728870 - THE1A LTR MaLR 0 355 1 9391 107 8 123 chr12 89553619 89554915 -54727574 - THE1A-int LTR MaLR 0 1580 306 1260 126 107 0 chr12 89554915 89555130 -54727359 - MLT2A1 LTR ERVL 0 444 207 9391 107 8 123 chr12 89555130 89555404 -54727085 - THE1A-int LTR MaLR -1274 306 2 2442 115 6 0 chr12 89555405 89555753 -54726736 - THE1A LTR MaLR 0 355 6 2052 243 99 54 chr12 89555759 89556519 -54725970 + L1M4 LINE L1 909 1759 -4887 354 23 0 0 chr12 89556519 89556562 -54725927 + (CA)n Simple_repeat Simple_repeat 2 44 0 2052 243 99 54 chr12 89556562 89556924 -54725565 + L1M4 LINE L1 1759 2103 -4543 21 0 0 0 chr12 89556987 89557008 -54725481 + AT_rich Low_complexity Low_complexity 1 21 0 2735 253 85 83 chr12 89557042 89559176 -54723313 + L1M4 LINE L1 2341 4695 -1949 1076 185 13 46 chr12 89559181 89559419 -54723070 + MER46A DNA MER2_type 7 236 0 2494 231 76 36 chr12 89559419 89560391 -54722098 + L1M4 LINE L1 4697 5707 -937 422 283 0 0 chr12 89560381 89560487 -54722002 + L1M2 LINE L1 2556 2661 -4188 * 972 239 85 24 chr12 89560736 89561169 -54721320 - MER113 DNA MER1_type? 0 521 31 23 33 0 0 chr12 89561845 89561875 -54720614 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr12 89562019 89562043 -54720446 + AT_rich Low_complexity Low_complexity 1 24 0 212 276 0 0 chr12 89563179 89563237 -54719252 + A-rich Low_complexity Low_complexity 5 62 0 308 268 130 32 chr12 89563693 89563816 -54718673 + MIR SINE MIR 17 151 -111 2020 171 81 23 chr12 89564025 89564533 -54717956 - MLT2A2 LTR ERVL 0 554 1 275 229 12 36 chr12 89564936 89565019 -54717470 + CT-rich Low_complexity Low_complexity 2 82 0 32597 103 20 11 chr12 89566595 89567373 -54715116 - HERVL-A2 LTR ERVL -118 5536 4766 1890 213 146 87 chr12 89567373 89568153 -54714336 + LTR1B LTR ERV1 1 826 0 32597 103 20 11 chr12 89568153 89570284 -54712205 - HERVL-A2 LTR ERVL -888 4766 2654 2242 100 0 3 chr12 89570284 89570574 -54711915 + AluSg1 SINE Alu 12 300 -9 32597 103 20 11 chr12 89570574 89571472 -54711017 - HERVL-A2 LTR ERVL -3000 2654 1682 7815 38 9 0 chr12 89571472 89572541 -54709948 - L1PA4 LINE L1 -1 6154 5082 32597 103 20 11 chr12 89572541 89573282 -54709207 - HERVL-A2 LTR ERVL -3972 1682 949 1997 152 0 0 chr12 89574164 89574454 -54708035 - AluSq SINE Alu -23 290 1 277 213 16 0 chr12 89574564 89574625 -54707864 - MLT1H LTR MaLR 0 549 488 31877 114 12 57 chr12 89574636 89581086 -54701403 + L1PA7 LINE L1 12 6151 -3 183 80 0 0 chr12 89581113 89581138 -54701351 + (A)n Simple_repeat Simple_repeat 1 25 0 2341 86 0 3 chr12 89581199 89581500 -54700989 - AluY SINE Alu -11 300 1 183 343 0 27 chr12 89582761 89582834 -54699655 - L2 LINE L2 -676 2638 2568 466 228 69 74 chr12 89633976 89634178 -54648311 + L1M4 LINE L1 2979 3179 -2967 25 0 0 0 chr12 89634408 89634433 -54648056 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr12 89635900 89635928 -54646561 + AT_rich Low_complexity Low_complexity 1 28 0 3976 150 21 50 chr12 89635933 89636707 -54645782 + L1P3 LINE L1 6 756 -5705 3645 130 16 6 chr12 89636706 89637329 -54645160 + L1P3 LINE L1 2405 3033 -3428 * 6483 74 18 0 chr12 89637327 89638581 -54643908 + L1PA8 LINE L1 4879 6152 -20 380 266 109 8 chr12 89638593 89638721 -54643768 - MIR SINE MIR -120 142 2 2951 180 57 7 chr12 89638964 89639546 -54642943 + LTR36 LTR ERV1 1 611 0 183 195 0 24 chr12 89639549 89639590 -54642899 - L2 LINE L2 -13 3259 3220 * 193 274 39 0 chr12 89639557 89639608 -54642881 - MIR SINE MIR -14 248 196 198 191 0 0 chr12 89639757 89639804 -54642685 + (TA)n Simple_repeat Simple_repeat 2 48 0 2466 80 0 3 chr12 89641218 89641530 -54640959 + AluY SINE Alu 1 311 0 21 36 0 0 chr12 89643285 89643313 -54639176 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 89643501 89643530 -54638959 + AT_rich Low_complexity Low_complexity 1 29 0 868 148 164 0 chr12 89643909 89644092 -54638397 + L1MC/D LINE L1 5532 5744 -589 737 254 147 53 chr12 89644121 89644310 -54638179 + MLT1E2 LTR MaLR 273 443 -183 387 0 0 0 chr12 89644310 89644353 -54638136 + (CA)n Simple_repeat Simple_repeat 2 44 0 737 254 147 53 chr12 89644353 89644482 -54638007 + MLT1E2 LTR MaLR 443 623 -3 346 292 130 7 chr12 89644509 89644663 -54637826 - L1M4 LINE L1 -2647 3499 3327 342 282 84 0 chr12 89644664 89644700 -54637789 - L1MA10 LINE L1 -19 6315 6280 1217 255 105 14 chr12 89644700 89645261 -54637228 - L1ME1 LINE L1 -53 6113 5502 2185 221 52 0 chr12 89645954 89646439 -54636050 - MST-int LTR MaLR -779 872 363 38 22 0 0 chr12 89646458 89646503 -54635986 + AT_rich Low_complexity Low_complexity 1 45 0 1000 160 0 0 chr12 89646503 89646647 -54635842 + FRAM SINE Alu 1 136 -40 417 223 48 72 chr12 89646964 89647130 -54635359 + LTR54 LTR ERV1 1 162 -348 596 207 83 5 chr12 89647141 89647334 -54635155 + LTR54 LTR ERV1 303 510 0 356 303 55 68 chr12 89647383 89647690 -54634799 + HAL1 LINE L1 1175 1477 -1030 4551 188 62 26 chr12 89647694 89648813 -54633676 + L1MC1 LINE L1 7 1165 -5261 699 234 163 11 chr12 89648813 89649102 -54633387 - MER57A LTR ERV1 0 428 107 4116 175 139 5 chr12 89649195 89650300 -54632189 + L1MC1 LINE L1 1169 2421 -4005 1742 251 77 14 chr12 89650306 89651102 -54631387 + L1MC1 LINE L1 3011 3856 -2570 * 2444 210 48 36 chr12 89651090 89652419 -54630070 + L1MC1 LINE L1 4769 6109 -504 685 103 0 9 chr12 89652423 89652539 -54629950 + L1PBa LINE L1 1 115 -6748 325 224 0 13 chr12 89652543 89652619 -54629870 - L1M4 LINE L1 -1175 4971 4897 1109 153 65 0 chr12 89652624 89652840 -54629649 + L1PBa LINE L1 123 352 -6511 1650 150 94 86 chr12 89652842 89653203 -54629286 + THE1B LTR MaLR 1 364 0 5465 119 3 40 chr12 89653203 89653731 -54628758 + THE1B-int LTR MaLR 1 484 -1096 303 131 16 0 chr12 89653731 89653792 -54628697 + L1PA7 LINE L1 6090 6151 -3 5465 119 3 40 chr12 89653792 89654161 -54628328 + THE1B-int LTR MaLR 484 865 -715 2309 124 40 8 chr12 89654161 89654531 -54627958 + MLT2A2 LTR ERVL 1 382 -71 293 218 8 0 chr12 89654533 89654657 -54627832 + CT-rich Low_complexity Low_complexity 2 126 0 37662 89 27 16 chr12 89654698 89660062 -54622427 + HERVL-A2-A1 LTR ERVL 1 5433 -221 2921 138 8 32 chr12 89660062 89660563 -54621926 + LTR22B LTR ERVK 1 489 -3 37662 89 27 16 chr12 89660563 89660788 -54621701 + HERVL-A2-A1 LTR ERVL 5433 5654 0 3221 88 5 9 chr12 89660788 89661232 -54621257 + MLT2A1 LTR ERVL 1 442 -2 4322 134 32 0 chr12 89661232 89661926 -54620563 + THE1B-int LTR MaLR 859 1574 -6 1538 144 84 98 chr12 89661931 89662300 -54620189 + THE1B LTR MaLR 1 364 0 1405 193 42 13 chr12 89662304 89662615 -54619874 + L1PBa LINE L1 354 673 -6190 601 85 0 0 chr12 89662615 89662697 -54619792 - THE1A LTR MaLR -273 82 1 4997 123 24 18 chr12 89662699 89663591 -54618898 + L1PB1 LINE L1 5254 6150 -1 683 228 76 0 chr12 89663620 89663778 -54618711 + FRAM SINE Alu 1 169 -7 482 127 0 0 chr12 89663778 89663857 -54618632 + L1MC1 LINE L1 6103 6181 -443 2373 116 14 6 chr12 89663877 89664239 -54618250 - L1PB1 LINE L1 -4 6147 5783 285 109 0 0 chr12 89664249 89664295 -54618194 + (CA)n Simple_repeat Simple_repeat 2 47 0 532 174 7 101 chr12 89664314 89664395 -54618094 - MER46A DNA MER2_type -108 128 64 2123 100 20 7 chr12 89664395 89664694 -54617795 + AluY SINE Alu 1 303 -8 532 174 7 101 chr12 89664694 89664750 -54617739 - MER46A DNA MER2_type -172 64 4 27110 123 21 15 chr12 89664855 89668981 -54613508 - L1PA7 LINE L1 -7 6462 2272 6258 25 0 0 chr12 89668981 89669707 -54612782 - L1PA3 LINE L1 0 6155 5430 27110 123 21 15 chr12 89669707 89671289 -54611200 - L1PA7 LINE L1 -4197 2272 700 1871 194 31 35 chr12 89671286 89671708 -54610781 + L1MC1 LINE L1 6176 6595 -18 * 233 306 0 0 chr12 89672292 89672364 -54610125 + GA-rich Low_complexity Low_complexity 2 73 0 696 116 0 0 chr12 89672586 89672681 -54609808 - L1PA7 LINE L1 -6060 401 307 1511 97 5 5 chr12 89673347 89673554 -54608935 - HERVL LTR ERVL -3088 2566 2360 29 47 0 0 chr12 89674819 89674862 -54607627 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr12 89675226 89675248 -54607241 + AT_rich Low_complexity Low_complexity 1 22 0 180 424 68 8 chr12 89675338 89675456 -54607033 + MIR SINE MIR 20 144 -118 37 0 0 0 chr12 89675579 89675616 -54606873 + AT_rich Low_complexity Low_complexity 1 37 0 1185 203 36 8 chr12 89675699 89675993 -54606496 + MER61C LTR ERV1 1 404 -30 23 33 0 0 chr12 89676214 89676244 -54606245 + AT_rich Low_complexity Low_complexity 1 30 0 337 297 10 0 chr12 89676247 89676348 -54606141 + MIR SINE MIR 149 250 -12 605 286 89 29 chr12 89677725 89677972 -54604517 + MIR SINE MIR 2 259 -3 316 303 126 30 chr12 89678149 89678347 -54604142 - MIR SINE MIR -34 228 12 635 297 146 20 chr12 89678445 89678836 -54603653 - LTR33A LTR ERVL -39 484 45 229 275 80 0 chr12 89678919 89679057 -54603432 + MER113 DNA MER1_type? 76 224 -297 376 314 15 0 chr12 89679235 89679372 -54603117 + MER113 DNA MER1_type? 349 487 -34 1570 262 84 6 chr12 89680991 89681624 -54600865 + L1ME1 LINE L1 2322 3003 -3143 3055 227 89 42 chr12 89681711 89682826 -54599663 + L1ME1 LINE L1 4981 6136 -30 36 77 0 0 chr12 89683609 89683687 -54598802 + AT_rich Low_complexity Low_complexity 1 78 0 366 336 48 0 chr12 89684211 89684336 -54598153 + MIR SINE MIR 7 137 -125 187 296 156 37 chr12 89684845 89684980 -54597509 - MIR SINE MIR -59 203 53 427 312 64 0 chr12 89685286 89685427 -54597062 + Charlie1a DNA MER1_type 7 156 -1299 288 253 71 50 chr12 89685433 89685511 -54596978 - MLT1F LTR MaLR -27 522 440 2344 187 38 6 chr12 89685511 89685982 -54596507 + MER66B LTR ERV1 1 486 0 288 253 71 50 chr12 89685982 89686002 -54596487 - MLT1F LTR MaLR -109 440 422 2735 169 38 19 chr12 89686292 89686866 -54595623 - LTR60 LTR ERV1 -1 585 1 905 309 140 0 chr12 89686873 89687223 -54595266 - MLT1F LTR MaLR -132 410 12 293 248 48 57 chr12 89687200 89687305 -54595184 + Charlie1a DNA MER1_type 131 234 -1221 * 295 367 83 0 chr12 89687409 89687589 -54594900 - L1ME LINE L1 -483 5756 5562 348 317 54 21 chr12 89687872 89688112 -54594377 - L1ME LINE L1 -987 5228 4981 370 326 65 25 chr12 89688144 89688389 -54594100 - L1MC4a LINE L1 -1759 6049 5795 444 252 189 6 chr12 89688671 89688989 -54593500 - L1ME LINE L1 -2931 3284 2909 548 234 150 77 chr12 89689088 89689312 -54593177 - MER57A LTR ERV1 -9 394 181 2144 87 6 32 chr12 89689312 89689624 -54592865 - AluY SINE Alu -7 304 1 548 234 150 77 chr12 89689624 89689706 -54592783 - MER57A LTR ERV1 -222 181 106 362 303 62 38 chr12 89689821 89690451 -54592038 - L1MEc LINE L1 -3437 2778 2169 292 260 13 0 chr12 89691003 89691080 -54591409 + MIR3 SINE MIR 82 159 -49 22 0 0 0 chr12 89691697 89691719 -54590770 + AT_rich Low_complexity Low_complexity 1 22 0 218 103 0 26 chr12 89692027 89692066 -54590423 + (GAAAA)n Simple_repeat Simple_repeat 1 38 0 205 167 42 21 chr12 89692068 89692116 -54590373 + GA-rich Low_complexity Low_complexity 4 52 0 34 55 0 0 chr12 89692831 89692886 -54589603 + AT_rich Low_complexity Low_complexity 1 55 0 34 55 0 0 chr12 89693038 89693093 -54589396 + AT_rich Low_complexity Low_complexity 1 55 0 405 229 97 57 chr12 89694458 89694633 -54587856 + MIR SINE MIR 68 249 -13 267 226 179 12 chr12 89694987 89695071 -54587418 + MER5A DNA MER1_type 9 106 -83 468 321 107 36 chr12 89695109 89695502 -54586987 + L1M3b LINE L1 1261 1681 -5815 2470 247 78 39 chr12 89695899 89697570 -54584919 + L1M3b LINE L1 2102 3747 -3818 * 3180 157 50 19 chr12 89697567 89698780 -54583709 + L1MA4 LINE L1 4928 6292 -8 7266 36 80 0 chr12 89699721 89700679 -54581810 - L1PA4 LINE L1 -5 6150 5174 497 321 74 43 chr12 89700683 89701128 -54581361 + L2 LINE L2 2157 2615 -699 1580 178 29 0 chr12 89701242 89701556 -54580933 - L1MA9 LINE L1 -347 5965 5643 300 198 21 10 chr12 89701556 89701652 -54580837 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 717 167 95 0 chr12 89701668 89701794 -54580695 - L1MA9 LINE L1 -663 5649 5512 15847 35 4 1 chr12 89701826 89704520 -54577969 - L1PA3 LINE L1 -3 6152 3452 321 301 10 10 chr12 89704645 89704748 -54577741 + MIR SINE MIR 158 260 -2 21 0 0 0 chr12 89705276 89705297 -54577192 + AT_rich Low_complexity Low_complexity 1 21 0 370 293 18 33 chr12 89707303 89707484 -54575005 + MLT1J LTR MaLR 43 262 -249 1932 49 15 26 chr12 89707625 89707890 -54574599 + L1PA4 LINE L1 5894 6155 0 1855 162 37 8 chr12 89708221 89708572 -54573917 - MER46B DNA MER2_type 0 236 1 1050 169 24 0 chr12 89708624 89708831 -54573658 - L1PA14 LINE L1 -1015 5131 4920 5621 111 26 2 chr12 89708831 89709854 -54572635 + L1PA14 LINE L1 5111 6157 -4 536 287 122 0 chr12 89709988 89710152 -54572337 + MER5A DNA MER1_type 1 184 -5 2734 198 59 5 chr12 89710333 89710944 -54571545 + MER73 LTR ERVL 1 644 0 181 194 28 0 chr12 89711550 89711586 -54570903 + MIR SINE MIR 76 112 -150 341 141 51 0 chr12 89711753 89711831 -54570658 - L1MA9 LINE L1 -6 6306 6225 252 63 0 95 chr12 89711844 89711939 -54570550 + (TA)n Simple_repeat Simple_repeat 1 86 0 886 162 27 0 chr12 89712063 89712255 -54570234 - L1MA9 LINE L1 -680 5488 5280 40 49 0 0 chr12 89712551 89712612 -54569877 + AT_rich Low_complexity Low_complexity 1 61 0 883 250 5 0 chr12 89713638 89713826 -54568663 + MER5A DNA MER1_type 1 189 0 28 29 0 0 chr12 89714535 89714570 -54567919 + AT_rich Low_complexity Low_complexity 1 35 0 1394 175 21 91 chr12 89714877 89715208 -54567281 + AluJo SINE Alu 1 308 -4 203 245 142 28 chr12 89715707 89715813 -54566676 + L2 LINE L2 3149 3266 -6 682 45 0 0 chr12 89716168 89716256 -54566233 - L1PA5 LINE L1 0 6154 6067 265 29 0 0 chr12 89716256 89716290 -54566199 + L1P LINE L1 4775 4808 -1338 30 45 0 0 chr12 89716824 89716868 -54565621 + AT_rich Low_complexity Low_complexity 1 44 0 629 207 50 22 chr12 89717189 89717368 -54565121 - MER45R DNA AcHobo -7 1574 1391 201 219 31 0 chr12 89717537 89717601 -54564888 + (TTTA)n Simple_repeat Simple_repeat 1 66 0 24 0 0 0 chr12 89719064 89719088 -54563401 + AT_rich Low_complexity Low_complexity 1 24 0 213 369 121 6 chr12 89719453 89719610 -54562879 - L3 LINE CR1 -41 1536 1362 290 366 8 16 chr12 89720945 89721068 -54561421 + L2 LINE L2 3192 3313 0 251 191 16 16 chr12 89721162 89721225 -54561264 + (TA)n Simple_repeat Simple_repeat 2 64 0 200 397 0 0 chr12 89721250 89721318 -54561171 + L2 LINE L2 1121 1188 -2126 1098 311 57 23 chr12 89721402 89721872 -54560617 + L2 LINE L2 2827 3312 -1 2400 58 0 13 chr12 89722580 89722889 -54559600 - AluY SINE Alu -6 305 1 21 0 0 0 chr12 89722896 89722917 -54559572 + AT_rich Low_complexity Low_complexity 1 21 0 241 324 248 0 chr12 89722962 89723107 -54559382 + MER5A DNA MER1_type 9 189 0 23 0 0 0 chr12 89723774 89723797 -54558692 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 89724478 89724500 -54557989 + AT_rich Low_complexity Low_complexity 1 22 0 2267 54 0 20 chr12 89725259 89725557 -54556932 + AluY SINE Alu 1 292 -19 26 30 0 0 chr12 89725898 89725931 -54556558 + AT_rich Low_complexity Low_complexity 1 33 0 297 253 22 11 chr12 89725931 89726022 -54556467 - MIR SINE MIR -42 220 129 286 320 107 0 chr12 89726757 89726860 -54555629 + L2 LINE L2 3137 3250 -22 2414 193 14 0 chr12 89727780 89728225 -54554264 + MLT1C LTR MaLR 1 451 -16 253 395 33 40 chr12 89729334 89729486 -54553003 - MIR3 SINE MIR -16 192 42 22 56 0 0 chr12 89729835 89729871 -54552618 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr12 89730164 89730185 -54552304 + AT_rich Low_complexity Low_complexity 1 21 0 664 287 162 22 chr12 89730848 89731265 -54551224 - L1ME3A LINE L1 -26 6144 5669 214 83 50 50 chr12 89731265 89731325 -54551164 + (TA)n Simple_repeat Simple_repeat 1 60 0 350 270 0 36 chr12 89731414 89731525 -54550964 - L1ME3A LINE L1 -583 5579 5473 1719 229 36 30 chr12 89732054 89732556 -54549933 + MLT1D LTR MaLR 1 505 0 670 211 38 22 chr12 89732569 89732754 -54549735 + MLT1D-int LTR MaLR 14 201 -1170 542 331 38 32 chr12 89732928 89733275 -54549214 + L2 LINE L2 2146 2494 -820 466 335 104 0 chr12 89733304 89733534 -54548955 - MIR SINE MIR -8 254 1 183 360 11 11 chr12 89733710 89733799 -54548690 + L2 LINE L2 2690 2778 -536 617 223 97 23 chr12 89733960 89734135 -54548354 + L2 LINE L2 3122 3309 -4 267 103 0 0 chr12 89734354 89734393 -54548096 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 535 329 170 35 chr12 89734795 89735430 -54547059 + L2 LINE L2 1264 1984 -1330 626 247 70 37 chr12 89735516 89736165 -54546324 - L1ME3A LINE L1 -33 6137 5452 22 35 0 0 chr12 89736281 89736310 -54546179 + AT_rich Low_complexity Low_complexity 1 29 0 1936 127 22 29 chr12 89737676 89737990 -54544499 + AluSx SINE Alu 1 312 0 1260 190 30 22 chr12 89738006 89738275 -54544214 - MLT1B LTR MaLR -119 271 1 764 154 0 8 chr12 89738399 89738522 -54543967 - MER21B LTR ERV1 -504 359 238 773 191 0 0 chr12 89738873 89739009 -54543480 - FRAM SINE Alu -9 167 32 194 312 128 9 chr12 89739115 89739224 -54543265 + L2 LINE L2 2412 2533 -781 207 204 0 0 chr12 89739274 89739318 -54543171 + (TA)n Simple_repeat Simple_repeat 1 44 0 2465 200 20 79 chr12 89739936 89740545 -54541944 - MER21B LTR ERV1 -53 810 238 373 289 87 29 chr12 89740796 89741058 -54541431 - MLT1G1 LTR MaLR -4 570 313 304 338 85 44 chr12 89741266 89741583 -54540906 - L2 LINE L2 -672 2642 2313 2123 114 3 0 chr12 89742394 89742691 -54539798 - AluSg SINE Alu -12 298 1 22 0 0 0 chr12 89743193 89743215 -54539274 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 89743319 89743340 -54539149 + AT_rich Low_complexity Low_complexity 1 21 0 231 353 111 21 chr12 89743475 89743710 -54538779 - L2 LINE L2 -463 2851 2596 408 150 0 0 chr12 89743750 89743810 -54538679 + U6 snRNA snRNA 5 64 -43 2954 133 24 10 chr12 89744778 89745137 -54537352 - L1PB3 LINE L1 -7 6147 5778 243 0 0 0 chr12 89745137 89745164 -54537325 + (TG)n Simple_repeat Simple_repeat 2 28 0 2954 133 24 10 chr12 89745164 89745300 -54537189 - L1PB3 LINE L1 -376 5778 5645 2049 245 40 47 chr12 89745316 89746338 -54536151 - LTR27 LTR ERV1 -59 1696 2 4569 190 23 9 chr12 89746338 89747683 -54534806 - L1P5 LINE L1 -500 6370 5011 3679 249 41 29 chr12 89747679 89749592 -54532897 - L1P5 LINE L1 -5223 1640 420 * 1844 120 110 3 chr12 89749592 89749901 -54532588 - MER61A LTR ERV1 -1 342 1 6099 123 50 13 chr12 89749901 89750892 -54531597 - MER61A-int LTR ERV1 0 5217 4190 34 42 0 0 chr12 89750892 89750940 -54531549 + AT_rich Low_complexity Low_complexity 1 48 0 17346 44 6 1 chr12 89750950 89753894 -54528595 - L1PA5 LINE L1 -5 6149 3196 647 168 8 8 chr12 89753898 89754029 -54528460 + Charlie5 DNA MER1_type 2455 2585 -27 202 114 68 0 chr12 89754479 89754523 -54527966 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 13491 91 25 13 chr12 89754546 89755415 -54527074 - MER61A-int LTR ERV1 -1013 4204 3347 2321 89 0 7 chr12 89755415 89755717 -54526772 + AluY SINE Alu 1 300 -11 13491 91 25 13 chr12 89755717 89756759 -54525730 - MER61A-int LTR ERV1 -1870 3347 2266 206 62 31 0 chr12 89756759 89756791 -54525698 + (TTA)n Simple_repeat Simple_repeat 2 34 0 13491 91 25 13 chr12 89756791 89756831 -54525658 - MER61A-int LTR ERV1 -2951 2266 2228 243 0 0 0 chr12 89757417 89757444 -54525045 + (TTG)n Simple_repeat Simple_repeat 1 27 0 248 338 101 27 chr12 89758634 89758853 -54523636 - MIR SINE MIR -16 246 12 270 218 40 109 chr12 89759922 89760023 -54522466 + MLT1L LTR MaLR 179 272 -343 1322 245 50 12 chr12 89760864 89761207 -54521282 + MLT1A1 LTR MaLR 10 365 0 2443 94 0 0 chr12 89762819 89763127 -54519362 + AluSg SINE Alu 1 308 -2 1618 264 77 33 chr12 89764075 89764593 -54517896 + MLT1H LTR MaLR 3 543 -6 366 115 0 0 chr12 89765516 89765577 -54516912 + (TG)n Simple_repeat Simple_repeat 1 61 0 795 276 34 12 chr12 89765649 89765910 -54516579 + Charlie8 DNA MER1_type 6 254 -2163 544 321 111 39 chr12 89766164 89766553 -54515936 - MLT1K LTR MaLR -16 572 156 213 295 154 18 chr12 89766924 89767050 -54515439 + MIR SINE MIR 20 161 -66 299 189 36 45 chr12 89767313 89767424 -54515065 - L1ME3A LINE L1 -219 5951 5842 358 311 149 27 chr12 89767588 89767916 -54514573 - L1MEc LINE L1 -3993 2317 1950 309 278 111 44 chr12 89768077 89768174 -54514315 - L1MEc LINE L1 -4576 1734 1645 3490 130 4 9 chr12 89768174 89768703 -54513786 - MER1A DNA MER1_type -1 526 1 309 278 111 44 chr12 89768703 89769126 -54513363 - L1MEc LINE L1 -4665 1645 1179 454 297 93 63 chr12 89769154 89769615 -54512874 - L1MEc LINE L1 -5047 1072 598 183 222 37 0 chr12 89770062 89770143 -54512346 + CT-rich Low_complexity Low_complexity 1 84 0 325 304 84 87 chr12 89770698 89771053 -54511436 - L1MEc LINE L1 -5717 402 49 1705 84 0 0 chr12 89771272 89771485 -54511004 + AluSg/x SINE Alu 75 287 -23 291 272 42 110 chr12 89771996 89772360 -54510129 - MLT1H LTR MaLR -33 376 79 21 36 0 0 chr12 89772795 89772823 -54509666 + AT_rich Low_complexity Low_complexity 1 28 0 2202 208 16 10 chr12 89772883 89773379 -54509110 - L1 LINE L1 -889 5959 5461 * 5898 216 23 20 chr12 89773372 89773433 -54509056 - L1 LINE L1 -2390 4458 4399 213 39 0 0 chr12 89773433 89773459 -54509030 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5898 216 23 20 chr12 89773459 89774913 -54507576 - L1 LINE L1 -2449 4399 2950 266 0 29 0 chr12 89774913 89774947 -54507542 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2102 105 0 0 chr12 89774950 89775227 -54507262 - AluSg SINE Alu -33 277 1 5898 216 23 20 chr12 89775227 89776128 -54506361 - L1 LINE L1 -3899 2949 2030 2219 169 9 61 chr12 89776129 89776401 -54506088 - MSTB LTR MaLR -4 422 137 2513 100 14 3 chr12 89776401 89776761 -54505728 + THE1B LTR MaLR 1 364 0 9435 133 31 40 chr12 89776761 89778355 -54504134 + THE1B-int LTR MaLR 1 1580 0 2294 141 6 3 chr12 89778355 89778718 -54503771 + THE1B LTR MaLR 1 364 0 2219 169 9 61 chr12 89778718 89778888 -54503601 - MSTB LTR MaLR -286 140 1 8045 202 133 4 chr12 89778892 89779319 -54503170 - L1 LINE L1 -4817 2032 1661 350 91 18 0 chr12 89779319 89779374 -54503115 + (TA)n Simple_repeat Simple_repeat 2 57 0 8045 202 133 4 chr12 89779374 89780746 -54501743 - L1 LINE L1 -5188 1661 1 1135 188 60 4 chr12 89780756 89781006 -54501483 - L1MA8 LINE L1 -55 6236 5973 996 132 6 29 chr12 89781007 89781181 -54501308 + L1MA8 LINE L1 5808 5977 -314 25 0 0 0 chr12 89781486 89781511 -54500978 + AT_rich Low_complexity Low_complexity 1 25 0 198 371 112 0 chr12 89781830 89781946 -54500543 + L2 LINE L2 3121 3249 -23 2008 136 0 10 chr12 89782790 89783092 -54499397 - AluSx SINE Alu -13 299 1 233 167 0 0 chr12 89783286 89783322 -54499167 + U2 snRNA snRNA 1 36 -152 255 330 75 0 chr12 89783416 89783510 -54498979 - MIR3 SINE MIR -5 203 103 2213 110 11 38 chr12 89783562 89783927 -54498562 - THE1A LTR MaLR 0 355 1 278 247 68 0 chr12 89784674 89784747 -54497742 - MIR SINE MIR -120 142 65 3261 39 2 10 chr12 89784900 89785315 -54497174 + L1PA5 LINE L1 5743 6154 0 362 303 11 85 chr12 89785404 89785592 -54496897 - MIR SINE MIR -5 257 84 30 45 0 0 chr12 89785857 89785901 -54496588 + AT_rich Low_complexity Low_complexity 1 44 0 186 103 0 0 chr12 89786547 89786576 -54495913 + (TG)n Simple_repeat Simple_repeat 2 30 0 240 314 69 91 chr12 89787157 89787475 -54495014 + L2 LINE L2 3003 3313 0 22 56 0 0 chr12 89789364 89789400 -54493089 + AT_rich Low_complexity Low_complexity 1 36 0 257 122 0 0 chr12 89789427 89789468 -54493021 - L1PA15 LINE L1 -7 6158 6118 199 337 126 15 chr12 89791066 89791265 -54491224 + L2 LINE L2 2382 2602 -712 443 332 62 19 chr12 89791663 89791871 -54490618 + MIR SINE MIR 11 227 -35 22 56 0 0 chr12 89791912 89791948 -54490541 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr12 89792119 89792145 -54490344 + AT_rich Low_complexity Low_complexity 1 26 0 29312 49 3 2 chr12 89792868 89796557 -54485932 + L1P LINE L1 3 3698 -2448 26 0 0 0 chr12 89796562 89796588 -54485901 + AT_rich Low_complexity Low_complexity 1 26 0 259 289 36 48 chr12 89796904 89796987 -54485502 - L2 LINE L2 0 3272 3191 2125 99 10 7 chr12 89797735 89798027 -54484462 - AluSq SINE Alu -18 295 3 931 331 54 18 chr12 89798176 89798879 -54483610 - ERVL LTR ERVL -3178 2586 1814 748 97 0 18 chr12 89798993 89799107 -54483382 - L1PA13 LINE L1 -6 6157 6046 1320 247 109 65 chr12 89799573 89800384 -54482105 + L1ME3A LINE L1 5207 6044 -126 301 92 66 0 chr12 89800471 89800547 -54481942 + (TA)n Simple_repeat Simple_repeat 2 82 0 1434 199 18 18 chr12 89800563 89800845 -54481644 - AluJo SINE Alu -30 282 1 1668 168 3 81 chr12 89800906 89801263 -54481226 + MLT1B LTR MaLR 53 381 -9 700 239 41 82 chr12 89801328 89801596 -54480893 - MER46C DNA MER2_type -81 257 1 286 339 45 9 chr12 89802943 89803055 -54479434 - MIR SINE MIR -115 147 32 915 226 26 6 chr12 89803368 89803648 -54478841 + MER2 DNA MER2_type 2 335 -10 202 286 0 0 chr12 89803683 89803739 -54478750 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 238 317 59 14 chr12 89803796 89803883 -54478606 - MIR SINE MIR -61 147 63 314 267 0 38 chr12 89804272 89804377 -54478112 + CT-rich Low_complexity Low_complexity 3 103 0 317 24 24 0 chr12 89804523 89804565 -54477924 + (TG)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr12 89805226 89805250 -54477239 + AT_rich Low_complexity Low_complexity 1 24 0 201 219 31 0 chr12 89806713 89806777 -54475712 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 629 207 50 22 chr12 89806946 89807125 -54475364 + MER45R DNA AcHobo 1391 1574 -7 30 45 0 0 chr12 89807446 89807490 -54474999 + AT_rich Low_complexity Low_complexity 1 44 0 310 26 0 0 chr12 89808026 89808064 -54474425 - L1P LINE L1 -1338 4808 4771 682 45 0 0 chr12 89808064 89808148 -54474341 + L1PA5 LINE L1 6067 6154 0 203 245 142 28 chr12 89808503 89808609 -54473880 - L2 LINE L2 -6 3266 3149 1220 196 18 90 chr12 89809108 89809440 -54473049 - AluJo SINE Alu -4 308 1 9461 152 8 18 chr12 89810170 89811872 -54470617 - L1P LINE L1 -3448 2698 1015 6140 88 15 7 chr12 89811872 89813265 -54469224 + L1PA7 LINE L1 4751 6150 -4 327 295 68 39 chr12 89814050 89814284 -54468205 - HAL1b LINE L1 -440 908 668 387 328 56 62 chr12 89814386 89814709 -54467780 - HAL1b LINE L1 -822 526 206 347 362 31 35 chr12 89814775 89815062 -54467427 + LTR16C LTR ERVL 85 370 -121 1326 96 5 5 chr12 89815763 89815981 -54466508 + L1P LINE L1 3086 3303 -2843 440 0 18 0 chr12 89815979 89816036 -54466453 - L1P LINE L1 -756 5399 5342 * 6258 20 4 4 chr12 89816036 89816776 -54465713 + L1PA3 LINE L1 5411 6152 -3 3413 85 8 0 chr12 89816782 89817264 -54465225 + L1P LINE L1 3291 3776 -2370 232 136 0 182 chr12 89817480 89817546 -54464943 - MLT1J1 LTR MaLR -109 337 284 315 264 75 19 chr12 89817656 89817762 -54464727 - MLT1J2 LTR MaLR -247 203 92 607 253 17 28 chr12 89817806 89818009 -54464480 + MLT1H LTR MaLR 2 245 -304 338 266 8 32 chr12 89818078 89818202 -54464287 - LTR28 LTR ERV1 0 1020 900 1748 214 56 128 chr12 89818262 89819078 -54463411 - LTR1B LTR ERV1 -67 759 2 240 214 119 36 chr12 89819207 89819291 -54463198 + MLT1H LTR MaLR 436 526 -23 958 136 84 0 chr12 89819414 89819569 -54462920 - AluJb SINE Alu -12 300 133 303 297 26 26 chr12 89821042 89821197 -54461292 + L1PB4 LINE L1 5934 6088 -68 376 159 0 68 chr12 89821425 89821463 -54461026 + L1PB4 LINE L1 6073 6112 -44 1773 191 77 20 chr12 89821463 89821866 -54460623 + MSTB LTR MaLR 1 426 0 376 159 0 68 chr12 89821866 89821915 -54460574 + L1PB4 LINE L1 6112 6154 -2 444 316 176 29 chr12 89821936 89822101 -54460388 - L2 LINE L2 -341 2973 2834 1029 193 13 9 chr12 89822101 89822329 -54460160 - L1MB8 LINE L1 -6 6172 5944 444 316 176 29 chr12 89822329 89822549 -54459940 - L2 LINE L2 -480 2834 2531 1912 111 33 0 chr12 89822943 89823244 -54459245 + AluSg SINE Alu 1 310 0 866 251 147 45 chr12 89825499 89826009 -54456480 - L1MC4 LINE L1 -112 7930 7369 1298 162 9 0 chr12 89826011 89826227 -54456262 - AluSq SINE Alu -6 307 90 304 250 196 0 chr12 89826234 89826326 -54456163 - L1MC4 LINE L1 -696 7346 7237 23 0 0 0 chr12 89826757 89826780 -54455709 + AT_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr12 89829651 89829690 -54452799 + AT_rich Low_complexity Low_complexity 1 39 0 225 322 52 105 chr12 89829860 89830317 -54452172 - HAL1 LINE L1 -2041 466 34 30 83 0 0 chr12 89830480 89830552 -54451937 + AT_rich Low_complexity Low_complexity 1 72 0 1624 135 7 29 chr12 89831729 89832003 -54450486 - AluSx SINE Alu -44 268 1 34 0 0 0 chr12 89832225 89832259 -54450230 + AT_rich Low_complexity Low_complexity 1 34 0 261 0 0 0 chr12 89832265 89832294 -54450195 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1494 171 4 4 chr12 89832297 89832554 -54449935 - AluJo SINE Alu -44 268 12 24 67 0 0 chr12 89833339 89833384 -54449105 + AT_rich Low_complexity Low_complexity 1 45 0 219 274 245 10 chr12 89833406 89833508 -54448981 - MIR SINE MIR -79 183 58 258 297 97 7 chr12 89833511 89833656 -54448833 - L1ME LINE L1 -440 5681 5524 3039 137 16 6 chr12 89834788 89835283 -54447206 - HSMAR2 DNA Mariner -1 1301 802 2687 137 18 2 chr12 89835277 89835714 -54446775 - HSMAR2 DNA Mariner -850 452 9 * 384 65 0 0 chr12 89836211 89836257 -54446232 + (CA)n Simple_repeat Simple_repeat 2 47 0 26 64 0 0 chr12 89837273 89837320 -54445169 + GC_rich Low_complexity Low_complexity 1 47 0 231 146 0 0 chr12 89837456 89837497 -54444992 + (G)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr12 89837588 89837610 -54444879 + (G)n Simple_repeat Simple_repeat 1 22 0 270 337 43 48 chr12 89839573 89839760 -54442729 + MIR SINE MIR 2 187 -75 232 290 30 0 chr12 89839762 89839862 -54442627 + (TA)n Simple_repeat Simple_repeat 2 104 0 28 0 0 0 chr12 89840896 89840924 -54441565 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 89841058 89841080 -54441409 + AT_rich Low_complexity Low_complexity 1 22 0 1036 262 41 0 chr12 89841100 89841390 -54441099 + L1MD3 LINE L1 7490 7791 -204 336 367 42 26 chr12 89841767 89842031 -54440458 - L1MC4a LINE L1 -1935 5873 5606 268 250 0 0 chr12 89842360 89842416 -54440073 - AluJo SINE Alu -11 291 236 614 188 0 62 chr12 89842416 89842544 -54439945 - AluJo SINE Alu -127 185 66 251 94 0 0 chr12 89842546 89842578 -54439911 - AluJo SINE Alu -214 88 57 264 59 0 0 chr12 89842608 89842642 -54439847 + (T)n Simple_repeat Simple_repeat 1 34 0 4582 156 20 47 chr12 89842642 89843559 -54438930 + Tigger3b DNA MER2_type 340 1231 0 395 315 31 0 chr12 89844526 89844653 -54437836 - MLT1I LTR MaLR -254 155 25 712 0 0 0 chr12 89844761 89844840 -54437649 - L1PA2 LINE L1 -490 5665 5587 3666 68 4 14 chr12 89844847 89845348 -54437141 + L1PA2 LINE L1 5660 6155 0 2080 110 11 0 chr12 89845446 89845783 -54436706 - AluSp SINE Alu 0 340 1 370 293 18 33 chr12 89847490 89847671 -54434818 + MLT1J LTR MaLR 43 262 -249 1387 103 32 29 chr12 89847791 89848035 -54434454 + L1PA4 LINE L1 5869 6116 -39 2134 74 21 0 chr12 89848342 89848625 -54433864 + AluY SINE Alu 1 289 -22 26 0 0 0 chr12 89848625 89848651 -54433838 + AT_rich Low_complexity Low_complexity 1 26 0 324 120 0 0 chr12 89849068 89849118 -54433371 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 355 24 0 0 chr12 89849118 89849159 -54433330 - L1PA5 LINE L1 -18 6136 6096 194 306 22 90 chr12 89849710 89849844 -54432645 + L3b LINE CR1 1446 1570 -13 25 51 0 0 chr12 89850004 89850043 -54432446 + AT_rich Low_complexity Low_complexity 1 39 0 252 176 0 68 chr12 89850511 89850585 -54431904 + T-rich Low_complexity Low_complexity 3 71 0 295 330 99 11 chr12 89850813 89851004 -54431485 - MIR SINE MIR -36 226 19 731 197 28 17 chr12 89851538 89851716 -54430773 + LTR55 LTR ERV 1 180 -368 1372 244 44 9 chr12 89851882 89852546 -54429943 + L1MB7 LINE L1 4909 5594 -590 876 177 23 137 chr12 89852538 89852907 -54429582 + L1MB7 LINE L1 5802 6121 -63 * 543 93 139 0 chr12 89852907 89852993 -54429496 - AluSg/x SINE Alu -18 294 197 311 374 6 12 chr12 89853421 89853587 -54428902 + GA-rich Low_complexity Low_complexity 2 166 0 * 436 279 0 63 chr12 89853484 89853674 -54428815 + G-rich Low_complexity Low_complexity 3 180 0 213 376 78 35 chr12 89854498 89854639 -54427850 - MIR3 SINE MIR -16 192 46 761 277 5 0 chr12 89855623 89855811 -54426678 + MER5A DNA MER1_type 1 189 0 1185 320 45 9 chr12 89906030 89906471 -54376018 - HERV16 LTR ERVL -4539 457 1 612 328 71 35 chr12 89906537 89906848 -54375641 - LTR16A LTR ERVL -78 379 58 383 296 43 31 chr12 89906899 89907061 -54375428 - L2 LINE L2 -900 2414 2251 21 0 0 0 chr12 89907061 89907082 -54375407 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr12 89907591 89907636 -54374853 + AT_rich Low_complexity Low_complexity 1 45 0 211 245 298 11 chr12 89907641 89907735 -54374754 + L2 LINE L2 3140 3260 -12 3128 27 0 0 chr12 89907873 89908243 -54374246 + L1PA3 LINE L1 5786 6155 0 238 306 12 35 chr12 89910190 89910275 -54372214 - L2 LINE L2 -919 2395 2313 196 336 35 35 chr12 89910450 89910563 -54371926 - L2 LINE L2 -1071 2243 2131 298 218 13 26 chr12 89910760 89910838 -54371651 - LTR33 LTR ERVL -2 519 443 443 314 0 8 chr12 89911069 89911187 -54371302 - LTR33 LTR ERVL -361 160 44 189 121 0 0 chr12 89911979 89912012 -54370477 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 901 153 16 33 chr12 89912662 89912804 -54369685 + L1MA9 LINE L1 6133 6273 -39 1809 149 83 9 chr12 89912804 89913153 -54369336 - THE1C LTR MaLR 0 375 1 901 153 16 33 chr12 89913153 89913193 -54369296 + L1MA9 LINE L1 6273 6312 0 245 240 10 104 chr12 89913558 89913654 -54368835 - L2 LINE L2 -5 3267 3181 371 209 59 78 chr12 89914589 89914742 -54367747 + L1ME LINE L1 17 166 -5904 452 261 53 25 chr12 89915193 89915438 -54367051 + L1ME LINE L1 526 777 -5293 670 294 37 22 chr12 89915545 89915814 -54366675 - MER77 LTR ERV1 -29 576 304 735 262 39 49 chr12 89915875 89916161 -54366328 + L1ME2 LINE L1 5815 6097 -67 354 23 0 0 chr12 89916964 89917007 -54365482 + (TA)n Simple_repeat Simple_repeat 1 43 0 30 83 0 0 chr12 89917052 89917124 -54365365 + AT_rich Low_complexity Low_complexity 1 72 0 731 286 133 33 chr12 89918233 89918565 -54363924 - L2 LINE L2 -1753 1561 1197 3747 218 59 3 chr12 89919162 89920203 -54362286 - L1MB3 LINE L1 -3 6180 5095 2871 13 0 0 chr12 89920588 89920930 -54361559 - AluYb8 SINE Alu 0 342 1 336 62 62 0 chr12 89922305 89922353 -54360136 - L1PA4 LINE L1 -76 6079 6029 476 95 0 0 chr12 89922353 89922418 -54360071 + L1PA2 LINE L1 6079 6152 -3 189 0 0 0 chr12 89922766 89922787 -54359702 + (TG)n Simple_repeat Simple_repeat 2 22 0 263 212 0 0 chr12 89923225 89923291 -54359198 - L1MC4 LINE L1 -1339 6703 6638 486 324 65 0 chr12 89923295 89923465 -54359024 - MIR SINE MIR 0 262 82 1054 292 111 28 chr12 89924292 89924751 -54357738 - L2 LINE L2 -4 3309 2813 2295 84 51 25 chr12 89925039 89925394 -54357095 - THE1B LTR MaLR 0 364 1 376 321 36 7 chr12 89925431 89925568 -54356921 - L2 LINE L2 -360 2954 2814 219 170 0 0 chr12 89926932 89926979 -54355510 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 206 133 0 44 chr12 89927165 89927210 -54355279 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 27 0 0 0 chr12 89927545 89927572 -54354917 + AT_rich Low_complexity Low_complexity 1 27 0 21 71 0 0 chr12 89929279 89929321 -54353168 + AT_rich Low_complexity Low_complexity 1 42 0 193 149 43 21 chr12 89929970 89930017 -54352472 + L2 LINE L2 3265 3312 -1 743 251 56 84 chr12 89931047 89931532 -54350957 - MLT1H LTR MaLR 0 549 12 262 293 172 26 chr12 89932338 89932454 -54350035 - L2 LINE L2 -12 3301 3169 5510 206 129 38 chr12 89933249 89934755 -54347734 - MER52A LTR ERV1 0 1755 1 239 324 83 40 chr12 89934878 89935131 -54347358 - MLT1J LTR MaLR -148 363 100 327 333 100 64 chr12 89936596 89936987 -54345502 - MLT1J LTR MaLR 0 511 107 236 259 21 0 chr12 89937647 89937745 -54344744 + A-rich Low_complexity Low_complexity 1 150 0 399 314 79 26 chr12 89938141 89938370 -54344119 - L1M4 LINE L1 -2938 3208 2968 30 69 0 0 chr12 89938405 89938463 -54344026 + AT_rich Low_complexity Low_complexity 1 58 0 30 45 0 0 chr12 89938817 89938861 -54343628 + AT_rich Low_complexity Low_complexity 1 44 0 457 356 33 21 chr12 89939370 89939701 -54342788 - L1MEd LINE L1 -5784 335 1 22 35 0 0 chr12 89940962 89940991 -54341498 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr12 89941116 89941164 -54341325 + AT_rich Low_complexity Low_complexity 1 48 0 229 277 107 0 chr12 89941176 89941288 -54341201 - L1ME3A LINE L1 -230 5940 5817 243 358 26 7 chr12 89941440 89941591 -54340898 - L1ME3A LINE L1 -529 5641 5488 1239 189 73 4 chr12 89941610 89941717 -54340772 + AluJo SINE Alu 17 115 -197 180 0 0 0 chr12 89941717 89941737 -54340752 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1239 189 73 4 chr12 89941737 89941877 -54340612 + AluJo SINE Alu 115 281 -31 348 232 149 36 chr12 89941898 89942092 -54340397 - L1ME3A LINE L1 -691 5479 5264 321 292 85 18 chr12 89942463 89942695 -54339794 - L1ME3A LINE L1 -1217 4929 4675 301 300 70 53 chr12 89942728 89942971 -54339518 - L1ME3A LINE L1 -1530 4616 4370 228 250 0 19 chr12 89943398 89943450 -54339039 - MER49 LTR ERV1 -830 93 43 371 298 54 73 chr12 89943816 89944021 -54338468 - MLT1E LTR MaLR -199 394 194 608 210 65 16 chr12 89944257 89944381 -54338108 - MLT1E LTR MaLR -435 158 29 814 204 11 17 chr12 89944818 89944994 -54337495 - MER3 DNA MER1_type -28 181 7 31 26 0 0 chr12 89945261 89945299 -54337190 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr12 89945411 89945445 -54337044 + AT_rich Low_complexity Low_complexity 1 34 0 23 78 0 0 chr12 89945599 89945650 -54336839 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr12 89945842 89945863 -54336626 + AT_rich Low_complexity Low_complexity 1 21 0 189 310 131 35 chr12 89945869 89946014 -54336475 - MIR SINE MIR -59 203 45 21 36 0 0 chr12 89946016 89946044 -54336445 + AT_rich Low_complexity Low_complexity 1 28 0 180 114 57 29 chr12 89946076 89946146 -54336343 + (TA)n Simple_repeat Simple_repeat 1 72 0 26 50 0 0 chr12 89947223 89947263 -54335226 + AT_rich Low_complexity Low_complexity 1 40 0 780 101 0 0 chr12 89947469 89947578 -54334911 + L1PB1 LINE L1 5672 5780 -371 323 78 20 0 chr12 89947578 89947629 -54334860 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 1872 148 0 0 chr12 89947630 89947933 -54334556 + L1PB1 LINE L1 5848 6150 -1 201 175 0 0 chr12 89948167 89948207 -54334282 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 640 262 54 20 chr12 89948322 89948616 -54333873 + L1M4 LINE L1 2637 2940 -3206 8358 240 18 9 chr12 89948626 89950820 -54331669 + L1PA16 LINE L1 2789 5003 -1143 3262 141 24 0 chr12 89950844 89951419 -54331070 - L1MA2 LINE L1 0 6304 5716 13385 182 53 5 chr12 89951426 89953896 -54328593 - L1M1 LINE L1 -4965 2600 12 4936 153 19 11 chr12 89953898 89955045 -54327444 + L1PA16 LINE L1 4998 6157 -9 27 96 0 0 chr12 89955049 89955132 -54327357 + AT_rich Low_complexity Low_complexity 1 83 0 1049 205 144 28 chr12 89955218 89955594 -54326895 + MER66A LTR ERV1 97 416 -62 3541 126 3 2 chr12 89955918 89956506 -54325983 + L1PA7 LINE L1 2830 3418 -2728 * 6222 89 8 11 chr12 89956504 89957741 -54324748 + L1PA7 LINE L1 4584 5815 -339 2305 99 0 6 chr12 89957741 89958053 -54324436 + AluSg SINE Alu 1 310 0 6222 89 8 11 chr12 89958053 89958336 -54324153 + L1PA7 LINE L1 5815 6097 -57 3869 89 0 30 chr12 89958436 89958661 -54323828 + L1PA7 LINE L1 5605 5835 -319 2081 131 0 6 chr12 89958661 89958973 -54323516 + AluSg SINE Alu 1 310 0 3869 89 0 30 chr12 89958973 89959310 -54323179 + L1PA7 LINE L1 5835 6150 -4 369 239 0 0 chr12 89961600 89961671 -54320818 + Tigger5 DNA MER2_type 9 79 -2244 260 280 13 0 chr12 89961673 89961748 -54320741 - Tigger5 DNA MER2_type -6 2317 2242 * 405 247 0 0 chr12 89961738 89961819 -54320670 + Tigger5 DNA MER2_type 2242 2322 -1 22 35 0 0 chr12 89962735 89962764 -54319725 + AT_rich Low_complexity Low_complexity 1 29 0 308 357 49 57 chr12 89962773 89962952 -54319537 - L2 LINE L2 -17 3296 3118 1760 175 3 3 chr12 89962952 89963255 -54319234 - AluSx SINE Alu -9 303 1 308 357 49 57 chr12 89963255 89963338 -54319151 - L2 LINE L2 -195 3118 3036 1890 167 48 16 chr12 89963651 89964023 -54318466 - MLT1B LTR MaLR -3 387 4 7906 208 64 33 chr12 89964037 89966149 -54316340 - L1MC3 LINE L1 -32 8033 5857 4436 43 23 0 chr12 89966150 89966709 -54315780 + L1PA4 LINE L1 5584 6155 0 227 257 0 0 chr12 89966824 89966898 -54315591 + A-rich Low_complexity Low_complexity 1 74 0 924 198 4 83 chr12 89966898 89967027 -54315462 - L1MC3 LINE L1 -752 5872 5771 1701 131 0 26 chr12 89967027 89967295 -54315194 - AluSg SINE Alu -11 299 39 924 198 4 83 chr12 89967295 89967417 -54315072 - L1MC3 LINE L1 -853 5771 5641 1399 143 34 8 chr12 89967418 89967656 -54314833 - Tigger3(Golem) DNA MER2_type -1 3028 2785 976 207 36 0 chr12 89967672 89967865 -54314624 - Tigger3(Golem) DNA MER2_type -2829 200 1 3149 311 121 30 chr12 89967865 89969936 -54312553 - L1MC3 LINE L1 -784 5642 3384 888 232 86 63 chr12 89970016 89970556 -54311933 + L1M1 LINE L1 3210 3762 -3803 679 164 38 172 chr12 89970556 89970753 -54311736 + MER46A DNA MER2_type 10 165 -2566 1607 181 32 26 chr12 89970753 89970943 -54311546 - AluJb SINE Alu 0 312 118 221 0 0 33 chr12 89970943 89970973 -54311516 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1607 181 32 26 chr12 89970973 89971092 -54311397 - AluJb SINE Alu -194 118 1 679 164 38 172 chr12 89971092 89971156 -54311333 + MER46A DNA MER2_type 165 236 0 341 136 15 0 chr12 89971156 89971222 -54311267 + L1M1 LINE L1 3761 3827 -3738 * 355 221 37 98 chr12 89971221 89971465 -54311024 - L1MC3 LINE L1 -3068 3358 3130 299 276 17 52 chr12 89971474 89971523 -54310966 - LTR53 LTR ERVL -219 300 251 1505 218 33 25 chr12 89971523 89971885 -54310604 + MLT1A1 LTR MaLR 1 365 0 299 276 17 52 chr12 89971885 89971951 -54310538 - LTR53 LTR ERVL -268 251 189 655 218 60 12 chr12 89972136 89972388 -54310101 - L1MC3 LINE L1 -4018 2408 2145 670 288 85 37 chr12 89973124 89974231 -54308258 + L1ME LINE L1 706 1916 -4345 1133 291 50 24 chr12 89974867 89975283 -54307206 + MER74B LTR ERVL 122 548 -74 265 278 44 11 chr12 89975203 89975293 -54307196 - MER88 LTR ERVL -291 173 81 * 402 329 86 43 chr12 89975792 89976142 -54306347 + L1ME4a LINE L1 5604 5968 -153 22 0 0 0 chr12 89976306 89976328 -54306161 + AT_rich Low_complexity Low_complexity 1 22 0 2735 176 90 11 chr12 89976332 89976612 -54305877 + LTR69 LTR ERVL 1 257 -331 1837 177 19 8 chr12 89976612 89976974 -54305515 - MER47A DNA MER2_type 0 366 1 2735 176 90 11 chr12 89976974 89977238 -54305251 + LTR69 LTR ERVL 257 588 0 1957 151 24 9 chr12 89977570 89977901 -54304588 - MER1B DNA MER1_type -1 336 1 2964 186 9 77 chr12 89978096 89978837 -54303652 - LTR8 LTR ERV1 0 691 1 1211 119 53 16 chr12 89980043 89980356 -54302133 - THE1C LTR MaLR -2 373 1 1959 168 3 6 chr12 89980485 89980818 -54301671 + MER4C LTR ERV1 1 332 -133 359 195 0 12 chr12 89981016 89981098 -54301391 - L1M4c LINE L1 -1507 4875 4795 * 628 211 51 11 chr12 89981097 89981272 -54301217 + L1M4 LINE L1 4832 5013 -1133 * 6432 235 47 16 chr12 89981270 89983368 -54299121 - L1M4c LINE L1 -1593 4789 2582 2895 6 0 0 chr12 89983368 89983680 -54298809 - AluYb8 SINE Alu -6 312 1 6432 235 47 16 chr12 89983680 89984352 -54298137 - L1M4c LINE L1 -3800 2582 1932 847 276 111 99 chr12 89984352 89985309 -54297180 - MER52A LTR ERV1 0 1755 667 216 343 96 15 chr12 89985660 89985858 -54296631 - L2 LINE L2 -921 2393 2180 233 183 0 28 chr12 89986637 89986708 -54295781 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 2181 102 3 23 chr12 89987514 89987818 -54294671 + AluSx SINE Alu 1 298 -14 318 378 109 11 chr12 89988828 89989111 -54293378 - L1M4c LINE L1 -4798 1586 1276 18948 129 22 93 chr12 89989803 89993757 -54288732 + L1PA7 LINE L1 1 3672 -2474 8574 61 2 1 chr12 89993757 89994827 -54287662 + MER11C LTR ERVK 1 1071 0 1106 115 0 0 chr12 89994844 89995000 -54287489 - HERVK11 LTR ERVK -844 7109 6954 * 32751 79 4 1 chr12 89994984 89999217 -54283272 - HERVK11 LTR ERVK -1188 6765 2522 12666 111 10 0 chr12 89999222 90000981 -54281508 - HERVK11 LTR ERVK -6017 1936 161 8643 61 2 0 chr12 90001005 90002074 -54280415 - MER11C LTR ERVK 0 1071 1 11275 102 23 33 chr12 90002074 90004578 -54277911 + L1PA7 LINE L1 3665 6152 -2 392 290 86 41 chr12 90005062 90005283 -54277206 + MIR SINE MIR 32 262 0 203 114 45 23 chr12 90006230 90006274 -54276215 - L2 LINE L2 0 3313 3269 614 252 0 15 chr12 90006469 90006604 -54275885 + FLAM_A SINE Alu 1 133 0 1471 210 11 7 chr12 90007186 90007467 -54275022 + AluJo SINE Alu 1 282 -30 192 40 0 0 chr12 90007473 90007498 -54274991 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 390 162 0 0 chr12 90007500 90007574 -54274915 + (TG)n Simple_repeat Simple_repeat 1 74 0 456 211 21 0 chr12 90008851 90008993 -54273496 + (TA)n Simple_repeat Simple_repeat 1 145 0 252 59 0 0 chr12 90009054 90009088 -54273401 + (GA)n Simple_repeat Simple_repeat 2 35 0 510 321 71 12 chr12 90009118 90009358 -54273131 + MIR SINE MIR 2 255 -7 339 165 0 0 chr12 90009767 90009852 -54272637 + CT-rich Low_complexity Low_complexity 1 85 0 523 241 114 34 chr12 90010270 90010507 -54271982 - Zaphod DNA AcHobo -6 4025 3770 22 35 0 0 chr12 90010654 90010683 -54271806 + AT_rich Low_complexity Low_complexity 1 29 0 872 320 39 19 chr12 90010736 90011151 -54271338 + LTR16B LTR ERVL 42 464 0 1305 332 77 31 chr12 90011151 90012045 -54270444 + HERV16 LTR ERVL 1 935 -4061 384 275 18 0 chr12 90012048 90012157 -54270332 + Zaphod DNA AcHobo 307 417 -3614 1051 336 125 17 chr12 90012579 90013330 -54269159 + L2 LINE L2 1685 2516 -798 385 275 43 51 chr12 90013550 90013688 -54268801 + L2 LINE L2 3174 3310 -3 27 49 0 0 chr12 90014263 90014304 -54268185 + AT_rich Low_complexity Low_complexity 1 41 0 4942 51 0 0 chr12 90014468 90015072 -54267417 + L1PA5 LINE L1 5550 6153 -1 21 36 0 0 chr12 90016233 90016261 -54266228 + AT_rich Low_complexity Low_complexity 1 28 0 202 171 49 0 chr12 90016785 90016846 -54265643 + (TCTG)n Simple_repeat Simple_repeat 1 63 0 2421 53 0 13 chr12 90017332 90017632 -54264857 + AluY SINE Alu 1 296 -15 23 33 0 0 chr12 90017737 90017767 -54264722 + AT_rich Low_complexity Low_complexity 1 30 0 23 78 0 0 chr12 90018178 90018229 -54264260 + AT_rich Low_complexity Low_complexity 1 51 0 34 72 0 0 chr12 90018353 90018422 -54264067 + AT_rich Low_complexity Low_complexity 1 69 0 289 257 26 18 chr12 90018613 90018726 -54263763 - MIR SINE MIR -13 249 136 319 321 38 31 chr12 90018931 90019090 -54263399 + MIR SINE MIR 67 226 -36 1906 126 0 32 chr12 90019090 90019368 -54263121 + AluSx SINE Alu 28 296 -16 604 242 159 6 chr12 90019954 90020111 -54262378 - MER5A DNA MER1_type 0 189 9 631 212 88 92 chr12 90020534 90020908 -54261581 - MLT1E3 LTR MaLR 0 624 177 4251 196 167 67 chr12 90020908 90022433 -54260056 + MER52A LTR ERV1 1 1755 0 452 194 22 93 chr12 90022433 90022572 -54259917 - MLT1E3 LTR MaLR -446 180 52 3562 113 9 0 chr12 90024430 90024959 -54257530 + L1P4 LINE L1 5287 5820 -345 21 0 0 0 chr12 90024986 90025007 -54257482 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr12 90025052 90025084 -54257405 + AT_rich Low_complexity Low_complexity 1 32 0 351 263 0 0 chr12 90026303 90026383 -54256106 + Tigger5 DNA MER2_type 1 80 -2243 371 188 16 0 chr12 90026454 90026518 -54255971 + Tigger5 DNA MER2_type 2259 2323 0 461 267 93 17 chr12 90026524 90026696 -54255793 + MER110 LTR ERV1 303 487 -4 23 0 0 0 chr12 90026910 90026933 -54255556 + AT_rich Low_complexity Low_complexity 1 23 0 469 299 44 15 chr12 90027212 90027416 -54255073 - MIR SINE MIR -50 212 3 333 94 19 0 chr12 90027788 90027841 -54254648 - L1PA16 LINE L1 -4 6162 6109 26 30 0 0 chr12 90027981 90028014 -54254475 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr12 90028962 90028990 -54253499 + AT_rich Low_complexity Low_complexity 1 28 0 2087 239 90 37 chr12 90029341 90030164 -54252325 - L1ME1 LINE L1 -102 6064 5206 1154 273 19 17 chr12 90030162 90030624 -54251865 + L1ME1 LINE L1 3910 4372 -1774 * 1364 193 0 51 chr12 90030629 90030904 -54251585 + AluJo SINE Alu 35 295 -17 2437 243 40 51 chr12 90030908 90032422 -54250067 + L1ME1 LINE L1 4378 5881 -285 1008 363 99 23 chr12 90032564 90033567 -54248922 - L2 LINE L2 -270 3043 1965 21 0 0 0 chr12 90033648 90033669 -54248820 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 90035109 90035130 -54247359 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr12 90035695 90035734 -54246755 + AT_rich Low_complexity Low_complexity 1 39 0 3958 226 46 27 chr12 90036034 90037380 -54245109 - L1MD2 LINE L1 -24 6335 4965 269 349 0 0 chr12 90037597 90037680 -54244809 - MIR SINE MIR -178 84 2 477 117 13 0 chr12 90037743 90037820 -54244669 + MADE1 DNA Mariner 3 80 0 270 0 0 0 chr12 90037946 90037976 -54244513 + (TG)n Simple_repeat Simple_repeat 2 31 0 3282 83 24 2 chr12 90038507 90038965 -54243524 - L1PA8A LINE L1 -12 6119 5652 2037 151 20 82 chr12 90038965 90039414 -54243075 + L1PB3 LINE L1 5734 6154 0 1959 160 119 16 chr12 90039848 90040236 -54242253 + MSTA LTR MaLR 1 428 0 7942 193 33 4 chr12 90040237 90041840 -54240649 + MSTA-int LTR MaLR 2 1651 0 1065 167 102 69 chr12 90041840 90042013 -54240476 + MSTA LTR MaLR 1 186 -242 2254 87 3 7 chr12 90042013 90042313 -54240176 + AluY SINE Alu 1 299 -12 1065 167 102 69 chr12 90042313 90042384 -54240105 + MSTA LTR MaLR 186 253 -175 612 116 0 0 chr12 90042559 90042654 -54239835 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 1431 180 3 76 chr12 90042655 90042944 -54239545 - AluJo SINE Alu -43 269 2 1493 216 10 0 chr12 90043603 90043908 -54238581 - L1PA16 LINE L1 -2271 3875 3568 5596 192 48 26 chr12 90043908 90046106 -54236383 + L1PA16 LINE L1 3906 6156 -10 1614 148 46 4 chr12 90046134 90046397 -54236092 + AluSx SINE Alu 6 279 -33 180 0 0 0 chr12 90046401 90046421 -54236068 + (TAA)n Simple_repeat Simple_repeat 2 21 0 31 26 0 0 chr12 90046580 90046618 -54235871 + AT_rich Low_complexity Low_complexity 1 38 0 512 236 7 71 chr12 90046653 90046793 -54235696 + Tigger3b DNA MER2_type 1 131 -1100 1475 114 5 5 chr12 90046793 90047013 -54235476 - pTR5 LTR ERV1 -2048 390 171 334 191 53 21 chr12 90047015 90047109 -54235380 - LTR30 LTR ERV1 -80 642 546 3950 164 43 44 chr12 90047109 90048074 -54234415 - pTR5 LTR ERV1 -411 2027 742 5082 166 100 6 chr12 90048074 90049091 -54233398 + Tigger3b DNA MER2_type 119 1231 0 259 270 74 70 chr12 90049319 90049534 -54232955 - HAL1 LINE L1 -1089 1418 1203 405 95 0 0 chr12 90049534 90049597 -54232892 + (CA)n Simple_repeat Simple_repeat 2 64 0 320 273 31 87 chr12 90049597 90049758 -54232731 - HAL1 LINE L1 -1551 956 805 288 292 92 8 chr12 90049828 90049958 -54232531 - HAL1 LINE L1 -2366 141 1 372 156 0 0 chr12 90050031 90050121 -54232368 + (TA)n Simple_repeat Simple_repeat 2 91 0 25 51 0 0 chr12 90050487 90050526 -54231963 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chr12 90050699 90050732 -54231757 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr12 90050981 90051010 -54231479 + AT_rich Low_complexity Low_complexity 1 29 0 197 330 72 10 chr12 90051067 90051164 -54231325 - MIR3 SINE MIR 0 208 106 263 254 0 0 chr12 90051287 90051358 -54231131 - L1ME4a LINE L1 -6 6115 6045 22 35 0 0 chr12 90052124 90052153 -54230336 + AT_rich Low_complexity Low_complexity 1 29 0 2036 130 0 0 chr12 90052653 90052969 -54229520 - AluYb8 SINE Alu 0 318 3 294 271 0 0 chr12 90053115 90053211 -54229278 + (TA)n Simple_repeat Simple_repeat 2 97 0 230 174 0 0 chr12 90053211 90053257 -54229232 + LTR66 LTR ERVL 394 439 -171 2174 145 6 6 chr12 90053308 90053645 -54228844 + THE1B LTR MaLR 1 337 -27 303 28 0 0 chr12 90053676 90053712 -54228777 + (TG)n Simple_repeat Simple_repeat 1 36 0 320 247 179 49 chr12 90053803 90053965 -54228524 - L1M4 LINE L1 -1220 4926 4744 26 30 0 0 chr12 90055198 90055231 -54227258 + AT_rich Low_complexity Low_complexity 1 33 0 25 75 0 0 chr12 90055584 90055637 -54226852 + AT_rich Low_complexity Low_complexity 1 53 0 1063 204 35 116 chr12 90059415 90059817 -54222672 + L1MC3 LINE L1 5176 5515 -980 2306 83 3 0 chr12 90059817 90060117 -54222372 + AluSc SINE Alu 1 301 -8 1063 204 35 116 chr12 90060117 90060333 -54222156 + L1MC3 LINE L1 5515 5747 -748 1149 88 6 6 chr12 90060369 90060539 -54221950 - L1MA2 LINE L1 0 6304 6135 8868 222 51 23 chr12 90060539 90063585 -54218904 - L1M1 LINE L1 -4739 2826 10 455 307 116 15 chr12 90063600 90063975 -54218514 + L1MC3 LINE L1 5769 6141 -25 1234 269 75 70 chr12 90064061 90064624 -54217865 + L1MC4a LINE L1 7024 7583 -225 218 56 28 0 chr12 90064624 90064660 -54217829 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1234 269 75 70 chr12 90064660 90064761 -54217728 + L1MC4a LINE L1 7583 7682 -126 1840 153 3 0 chr12 90064761 90065079 -54217410 + AluSq SINE Alu 1 319 0 1234 269 75 70 chr12 90065079 90065193 -54217296 + L1MC4a LINE L1 7682 7808 0 2088 217 23 28 chr12 90065353 90065929 -54216560 - L1MC3 LINE L1 -1 7784 7212 2247 156 5 3 chr12 90065930 90066301 -54216188 - L1PB3 LINE L1 0 6154 5783 291 140 0 0 chr12 90066302 90066352 -54216137 + (TA)n Simple_repeat Simple_repeat 1 50 0 1369 244 72 19 chr12 90066352 90066921 -54215568 - L1M4 LINE L1 -3024 3122 2524 * 2894 147 36 0 chr12 90066916 90067608 -54214881 - L1PB3 LINE L1 -446 5717 5009 2866 248 40 82 chr12 90067589 90068222 -54214267 - L1MCb LINE L1 -4800 1764 1106 * 1212 180 38 0 chr12 90068222 90068483 -54214006 - L1MA5 LINE L1 -6 6294 6024 2866 248 40 82 chr12 90068483 90068719 -54213770 - L1MCb LINE L1 -5458 1106 862 198 0 0 0 chr12 90068719 90068741 -54213748 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2866 248 40 82 chr12 90068741 90069696 -54212793 - L1MCb LINE L1 -5702 862 19 582 253 105 87 chr12 90069767 90071035 -54211454 - L1MEc LINE L1 -2790 3425 2148 352 272 6 76 chr12 90071057 90071215 -54211274 - L1MEc LINE L1 -4518 1878 1732 1427 100 13 26 chr12 90071217 90071447 -54211042 + HSMAR2 DNA Mariner 1025 1251 -51 682 290 68 19 chr12 90071461 90072905 -54209584 - L1MEc LINE L1 -4241 1840 11 21 0 0 0 chr12 90072956 90072977 -54209512 + AT_rich Low_complexity Low_complexity 1 21 0 1227 191 52 134 chr12 90073522 90073831 -54208658 - MLT1A2 LTR MaLR -4 370 100 2435 72 10 0 chr12 90073831 90074135 -54208354 - AluSc SINE Alu -2 307 1 1227 191 52 134 chr12 90074135 90074228 -54208261 - MLT1A2 LTR MaLR -274 100 1 2005 120 13 7 chr12 90075476 90075775 -54206714 - AluSx SINE Alu -11 301 1 209 311 78 10 chr12 90076364 90076467 -54206022 + L3 LINE CR1 1353 1462 -115 234 0 0 0 chr12 90076570 90076596 -54205893 + (TG)n Simple_repeat Simple_repeat 2 27 0 243 0 0 0 chr12 90077751 90077778 -54204711 + (CA)n Simple_repeat Simple_repeat 2 28 0 4326 130 61 7 chr12 90077963 90078638 -54203851 + THE1B-int LTR MaLR 870 1580 0 2222 143 11 11 chr12 90078638 90079002 -54203487 + THE1B LTR MaLR 1 364 0 373 299 58 7 chr12 90079451 90079588 -54202901 - MIR SINE MIR 0 262 119 259 337 107 21 chr12 90079803 90079990 -54202499 + L2 LINE L2 3107 3309 -4 34 24 0 0 chr12 90080076 90080117 -54202372 + AT_rich Low_complexity Low_complexity 1 41 0 1070 256 52 75 chr12 90080902 90081405 -54201084 + MLT1D LTR MaLR 1 491 -14 666 112 164 40 chr12 90081690 90081842 -54200647 - L1MA9 LINE L1 -24 6288 6118 576 118 0 0 chr12 90084147 90084240 -54198249 - L1MA4A LINE L1 -4 6299 6207 322 295 0 9 chr12 90084532 90084637 -54197852 - MLT2E LTR ERVL -19 609 506 419 274 7 48 chr12 90084853 90084999 -54197490 - MLT2E LTR ERVL -457 171 32 23 0 0 0 chr12 90085420 90085443 -54197046 + AT_rich Low_complexity Low_complexity 1 23 0 219 340 29 67 chr12 90085443 90085652 -54196837 - MIR SINE MIR -13 249 49 326 44 0 0 chr12 90085875 90085920 -54196569 - L1HS LINE L1 0 6155 6111 * 3393 41 0 0 chr12 90085916 90086329 -54196160 + L1PA4 LINE L1 5707 6119 -36 23 0 0 0 chr12 90086478 90086501 -54195988 + AT_rich Low_complexity Low_complexity 1 23 0 262 306 145 76 chr12 90086978 90087810 -54194679 + L2 LINE L2 2380 3268 -4 6788 190 26 11 chr12 90088448 90088595 -54193894 - L1MA9 LINE L1 -1 6311 6168 216 0 0 0 chr12 90088595 90088619 -54193870 + (TG)n Simple_repeat Simple_repeat 1 24 0 6788 190 26 11 chr12 90088619 90090894 -54191595 - L1MA9 LINE L1 -144 6168 3858 23 0 0 0 chr12 90091065 90091088 -54191401 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 90091566 90091594 -54190895 + AT_rich Low_complexity Low_complexity 1 28 0 242 213 40 33 chr12 90092188 90092338 -54190151 + (TTATA)n Simple_repeat Simple_repeat 3 153 0 226 245 0 47 chr12 90092640 90092746 -54189743 + A-rich Low_complexity Low_complexity 1 101 0 476 115 103 0 chr12 90093394 90093481 -54189008 - L1PA10 LINE L1 -2 6166 6071 296 344 105 34 chr12 90094100 90094433 -54188056 - L2 LINE L2 -256 3057 2699 241 307 112 34 chr12 90094679 90094884 -54187605 - L2 LINE L2 -1340 1974 1754 22 56 0 0 chr12 90095133 90095169 -54187320 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr12 90095936 90095962 -54186527 + AT_rich Low_complexity Low_complexity 1 26 0 219 108 0 0 chr12 90096425 90096432 -54186057 + (GGAGAA)n Simple_repeat Simple_repeat 5 11 -30 1948 157 3 0 chr12 90096432 90096738 -54185751 + AluSx SINE Alu 1 307 -5 219 108 0 0 chr12 90096738 90096767 -54185722 + (GGAGAA)n Simple_repeat Simple_repeat 10 41 0 262 190 0 47 chr12 90096776 90096859 -54185630 + L1ME LINE L1 5351 5430 -732 1517 152 4 0 chr12 90097940 90098183 -54184306 - Tigger5 DNA MER2_type 0 2323 2080 235 313 16 0 chr12 90098166 90098230 -54184259 - Tigger5 DNA MER2_type -2222 101 37 * 610 271 85 38 chr12 90098351 90098716 -54183773 + Charlie2 DNA MER1_type 2481 2862 0 252 360 54 48 chr12 90099359 90099506 -54182983 - L2 LINE L2 -4 3268 3121 21 36 0 0 chr12 90100079 90100107 -54182382 + AT_rich Low_complexity Low_complexity 1 28 0 2787 163 85 11 chr12 90101219 90101773 -54180716 - LTR49 LTR ERV1 0 595 1 389 237 97 9 chr12 90102174 90102288 -54180201 - MER67D LTR ERV1 0 514 391 1219 189 61 109 chr12 90102338 90102729 -54179760 - MER67C LTR ERV1 -234 280 2 1751 128 0 18 chr12 90103814 90104088 -54178401 + AluSq SINE Alu 44 312 -1 380 317 50 8 chr12 90104227 90104347 -54178142 + MIR SINE MIR 20 144 -118 218 191 0 24 chr12 90104383 90104425 -54178064 + (CA)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr12 90104539 90104571 -54177918 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr12 90105465 90105489 -54177000 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 * 221 56 0 28 chr12 90105488 90105524 -54176965 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6533 27 1 1 chr12 90105524 90106297 -54176192 - L1PA3 LINE L1 -24 6131 5359 675 256 48 39 chr12 90106495 90106702 -54175787 - MER63A DNA MER1_type 0 210 2 252 22 67 0 chr12 90106948 90106993 -54175496 + (TA)n Simple_repeat Simple_repeat 2 49 0 286 219 55 0 chr12 90107832 90107905 -54174584 - LTR50 LTR ERVL 0 795 719 273 300 20 10 chr12 90107984 90108084 -54174405 - LTR50 LTR ERVL -211 584 484 884 191 154 0 chr12 90108145 90108365 -54174124 - LTR50 LTR ERVL -516 279 26 233 254 46 39 chr12 90108624 90108754 -54173735 + HAL1b LINE L1 702 832 -516 897 243 0 31 chr12 90108944 90109170 -54173319 - MER20 DNA MER1_type 0 219 1 22 88 0 0 chr12 90109488 90109545 -54172944 + AT_rich Low_complexity Low_complexity 1 57 0 1741 168 144 8 chr12 90109602 90109977 -54172512 - MSTA LTR MaLR -2 426 1 8525 160 16 38 chr12 90109977 90111590 -54170899 - MSTA-int LTR MaLR 0 1580 3 1524 150 160 54 chr12 90111592 90111979 -54170510 - MSTA LTR MaLR 0 428 1 500 294 68 60 chr12 90113222 90113410 -54169079 - MIR SINE MIR 0 262 70 2087 82 31 24 chr12 90113410 90113703 -54168786 - AluY SINE Alu -16 295 1 500 294 68 60 chr12 90113703 90113766 -54168723 - MIR SINE MIR -192 70 9 25 51 0 0 chr12 90113768 90113807 -54168682 + AT_rich Low_complexity Low_complexity 1 39 0 787 251 0 6 chr12 90114148 90114315 -54168174 + FRAM SINE Alu 1 166 0 421 277 75 59 chr12 90116012 90116265 -54166224 - MER110 LTR ERV1 -37 454 198 893 241 18 26 chr12 90117059 90117287 -54165202 - MER45C DNA AcHobo -2 951 726 686 308 115 28 chr12 90117516 90117737 -54164752 - MER45C DNA AcHobo -600 353 92 661 222 0 0 chr12 90117737 90117875 -54164614 - FLAM_A SINE Alu 0 138 1 686 308 115 28 chr12 90117875 90117972 -54164517 - MER45C DNA AcHobo -861 92 5 405 58 0 0 chr12 90119776 90119828 -54162661 + (CA)n Simple_repeat Simple_repeat 1 52 0 697 245 59 68 chr12 90120046 90120439 -54162050 - L1 LINE L1 -2130 4016 3628 278 304 17 35 chr12 90120457 90120572 -54161917 + L2 LINE L2 2615 2727 -587 255 204 0 0 chr12 90121259 90121313 -54161176 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 252 135 0 0 chr12 90121788 90121825 -54160664 + tRNA-Val-GTG tRNA tRNA 1 37 -39 253 205 24 12 chr12 90123191 90123274 -54159215 + (TA)n Simple_repeat Simple_repeat 1 84 0 324 285 56 21 chr12 90123699 90123843 -54158646 + HsTC2b DNA Tc2 8 156 -759 * 823 254 101 41 chr12 90123841 90124278 -54158211 + HsTC2b DNA Tc2 282 920 0 320 204 0 57 chr12 90124596 90124684 -54157805 - MER103 DNA DNA -2 164 82 22 88 0 0 chr12 90124910 90124967 -54157522 + AT_rich Low_complexity Low_complexity 1 57 0 26 0 0 0 chr12 90125249 90125275 -54157214 + AT_rich Low_complexity Low_complexity 1 26 0 1536 203 14 0 chr12 90125278 90125559 -54156930 - AluJb SINE Alu -25 287 3 227 271 17 0 chr12 90127057 90127116 -54155373 - L3 LINE CR1 -108 1469 1410 216 406 73 14 chr12 90127211 90127430 -54155059 - L3 LINE CR1 -309 1268 1037 1226 203 0 0 chr12 90127936 90128178 -54154311 - L1PA16 LINE L1 0 6166 5925 4781 218 23 14 chr12 90128181 90129349 -54153140 - L1PA16 LINE L1 -958 5188 4010 2416 78 0 0 chr12 90129475 90129784 -54152705 + AluY SINE Alu 1 309 -2 22 0 0 0 chr12 90129950 90129972 -54152517 + AT_rich Low_complexity Low_complexity 1 22 0 2625 39 0 3 chr12 90130144 90130456 -54152033 - AluY SINE Alu 0 311 1 230 234 0 47 chr12 90130826 90130890 -54151599 + MER103 DNA DNA 49 109 -57 180 179 0 0 chr12 90130944 90130983 -54151506 + (TA)n Simple_repeat Simple_repeat 1 39 0 531 258 3 26 chr12 90130994 90131306 -54151183 + (TATATG)n Simple_repeat Simple_repeat 1 305 0 265 129 16 16 chr12 90131351 90131413 -54151076 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 1196 204 53 4 chr12 90132129 90132274 -54150215 - AluJb SINE Alu -35 277 141 2088 78 18 4 chr12 90132274 90132555 -54149934 - AluSc SINE Alu -7 302 18 1196 204 53 4 chr12 90132555 90132673 -54149816 - AluJb SINE Alu -171 141 1 1046 159 77 0 chr12 90132728 90132935 -54149554 + L1MA4 LINE L1 6073 6295 -5 203 27 0 81 chr12 90133134 90133171 -54149318 + (GAATG)n Simple_repeat Simple_repeat 4 37 0 28 0 0 0 chr12 90133212 90133240 -54149249 + AT_rich Low_complexity Low_complexity 1 28 0 463 356 42 24 chr12 90133775 90134154 -54148335 + L1 LINE L1 4487 4872 -1274 355 256 0 23 chr12 90135437 90135523 -54146966 - L2 LINE L2 -10 3303 3220 22 35 0 0 chr12 90136104 90136133 -54146356 + AT_rich Low_complexity Low_complexity 1 29 0 4348 193 12 40 chr12 90136299 90136638 -54145851 - MER54A LTR ERVL 0 901 554 2437 57 3 16 chr12 90136638 90136952 -54145537 + AluY SINE Alu 1 310 -1 4348 193 12 40 chr12 90136952 90137539 -54144950 - MER54A LTR ERVL -347 554 1 1429 189 121 36 chr12 90138287 90138652 -54143837 - MSTD LTR MaLR 0 396 1 201 171 0 0 chr12 90139939 90139974 -54142515 + T-rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr12 90140165 90140189 -54142300 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 90141091 90141112 -54141377 + AT_rich Low_complexity Low_complexity 1 21 0 424 285 114 6 chr12 90141325 90141483 -54141006 - MIR SINE MIR -48 214 40 1514 138 0 114 chr12 90142016 90142349 -54140140 - AluSx SINE Alu -17 295 1 3864 18 0 0 chr12 90142500 90142942 -54139547 + L1PA3 LINE L1 5568 6009 -146 447 348 66 9 chr12 90143081 90143308 -54139181 + LTR16B LTR ERVL 217 456 -8 234 213 125 25 chr12 90144129 90144209 -54138280 + MLT1I LTR MaLR 322 409 0 324 0 0 0 chr12 90144909 90144945 -54137544 + (TG)n Simple_repeat Simple_repeat 2 37 0 198 209 0 0 chr12 90146186 90146229 -54136260 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 252 153 0 0 chr12 90146453 90146512 -54135977 + LTR66 LTR ERVL 395 453 -157 22 0 0 0 chr12 90146578 90146600 -54135889 + AT_rich Low_complexity Low_complexity 1 22 0 1520 184 41 14 chr12 90146859 90147153 -54135336 - THE1B LTR MaLR -19 345 44 184 50 100 0 chr12 90147809 90147849 -54134640 + (TTAAA)n Simple_repeat Simple_repeat 2 45 0 2139 97 3 17 chr12 90148805 90148982 -54133507 - AluSx SINE Alu -2 310 137 2162 121 0 10 chr12 90148982 90149295 -54133194 - AluSg SINE Alu 0 310 1 2139 97 3 17 chr12 90149295 90149417 -54133072 - AluSx SINE Alu -175 137 15 23 0 0 0 chr12 90150498 90150521 -54131968 + AT_rich Low_complexity Low_complexity 1 23 0 199 296 0 0 chr12 90150600 90150644 -54131845 + L3 LINE CR1 1394 1437 -140 2497 198 12 6 chr12 90150856 90151372 -54131117 + L1P LINE L1 4830 5348 -798 4089 117 22 3 chr12 90151537 90152171 -54130318 - L1PA13 LINE L1 -4 6159 5514 321 235 47 24 chr12 90152256 90152341 -54130148 + L1MC4 LINE L1 6617 6703 -1339 1720 37 14 0 chr12 90152342 90152557 -54129932 - L1PA5 LINE L1 -9 6145 5928 5405 47 6 1 chr12 90152557 90153241 -54129248 + L1P LINE L1 4399 5085 -1061 1240 263 5 18 chr12 90153238 90153422 -54129067 - L1P4 LINE L1 -634 5529 5344 * 644 21 42 21 chr12 90153422 90153518 -54128971 + L1PA4 LINE L1 6055 6152 -3 1240 263 5 18 chr12 90153518 90153771 -54128718 - L1PA13 LINE L1 -819 5344 5101 5372 119 10 4 chr12 90153773 90154585 -54127904 + L1PA13 LINE L1 5343 6159 -4 24 0 0 0 chr12 90155222 90155246 -54127243 + AT_rich Low_complexity Low_complexity 1 24 0 247 328 68 36 chr12 90155769 90155961 -54126528 + MIR SINE MIR 23 220 -42 558 213 0 55 chr12 90156068 90156195 -54126294 - MER20 DNA MER1_type -98 121 2 22 56 0 0 chr12 90156457 90156493 -54125996 + AT_rich Low_complexity Low_complexity 1 36 0 419 0 20 0 chr12 90157317 90157368 -54125121 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 200 318 131 19 chr12 90157549 90157656 -54124833 + L3 LINE CR1 1385 1503 -74 2474 54 0 0 chr12 90158837 90159131 -54123358 + AluY SINE Alu 6 299 -12 29 78 0 0 chr12 90159269 90159333 -54123156 + AT_rich Low_complexity Low_complexity 1 64 0 23 33 0 0 chr12 90159694 90159724 -54122765 + AT_rich Low_complexity Low_complexity 1 30 0 291 157 0 0 chr12 90159790 90159841 -54122648 + (TA)n Simple_repeat Simple_repeat 2 52 0 297 0 0 0 chr12 90159841 90159874 -54122615 + (CA)n Simple_repeat Simple_repeat 2 34 0 262 263 88 7 chr12 90160341 90160478 -54122011 + L1MC1 LINE L1 1277 1424 -4999 21 0 0 0 chr12 90160631 90160652 -54121837 + AT_rich Low_complexity Low_complexity 1 21 0 277 250 26 68 chr12 90160777 90160969 -54121520 + L1MC1 LINE L1 1968 2151 -4790 586 241 93 19 chr12 90160991 90161248 -54121241 - L1M4 LINE L1 -3708 2438 2163 6236 231 55 11 chr12 90164290 90165876 -54116613 + L1MC1 LINE L1 4031 5546 -1582 207 0 0 0 chr12 90165876 90165899 -54116590 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6236 231 55 11 chr12 90165899 90166719 -54115770 + L1MC1 LINE L1 5546 6328 -800 2213 145 11 24 chr12 90166719 90167099 -54115390 + THE1C LTR MaLR 1 375 0 6236 231 55 11 chr12 90167099 90167658 -54114831 + L1MC1 LINE L1 6328 7128 0 183 42 0 0 chr12 90167670 90167694 -54114795 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2246 97 0 3 chr12 90169850 90170150 -54112339 - AluSc SINE Alu 0 309 11 201 39 0 0 chr12 90170227 90170253 -54112236 + (TTG)n Simple_repeat Simple_repeat 1 26 0 210 91 0 0 chr12 90171339 90171372 -54111117 + (TAA)n Simple_repeat Simple_repeat 1 33 0 197 299 82 21 chr12 90172098 90172195 -54110294 - MIR SINE MIR -109 153 51 662 355 39 0 chr12 90172288 90172547 -54109942 + LTR16A LTR ERVL 182 450 0 1535 61 0 0 chr12 90173005 90173202 -54109287 - L1PA4 LINE L1 -3 6152 5956 2988 246 56 19 chr12 90173514 90174094 -54108395 - L1MC3 LINE L1 -1 7784 7081 226 279 15 29 chr12 90174094 90174162 -54108327 - MLT1F1 LTR MaLR -443 124 58 2988 246 56 19 chr12 90174162 90174570 -54107919 - L1MC3 LINE L1 -704 7081 6690 437 303 25 87 chr12 90174635 90174876 -54107613 + L2 LINE L2 3078 3303 -10 8578 217 37 21 chr12 90175271 90178619 -54103870 - L1PA16 LINE L1 0 6817 3445 21 36 0 0 chr12 90178645 90178673 -54103816 + AT_rich Low_complexity Low_complexity 1 28 0 4209 264 35 17 chr12 90178673 90180332 -54102157 - L1PA16 LINE L1 -3726 3071 1438 453 315 64 43 chr12 90180602 90181198 -54101291 - L1PA16 LINE L1 -5276 1511 245 21 82 0 0 chr12 90181288 90181337 -54101152 + AT_rich Low_complexity Low_complexity 1 49 0 634 300 5 14 chr12 90181481 90181691 -54100798 - MER63A DNA MER1_type 0 210 3 1027 259 31 0 chr12 90182802 90183057 -54099432 - MER82 DNA MER2_type -1 652 390 203 32 65 0 chr12 90183069 90183100 -54099389 + CT-rich Low_complexity Low_complexity 3 35 0 902 232 89 12 chr12 90183101 90183360 -54099129 - MER82 DNA MER2_type -252 401 123 226 261 14 0 chr12 90183874 90183943 -54098546 + (TA)n Simple_repeat Simple_repeat 1 70 0 219 351 64 23 chr12 90183943 90184114 -54098375 - MIR SINE MIR -56 206 29 2196 106 0 13 chr12 90184406 90184717 -54097772 - AluSq SINE Alu -6 307 1 573 224 12 0 chr12 90184736 90184901 -54097588 + Charlie5 DNA MER1_type 2458 2624 0 517 275 35 35 chr12 90185006 90185148 -54097341 - MLT1G1 LTR MaLR -175 420 279 724 265 32 16 chr12 90186601 90186786 -54095703 + MIR SINE MIR 52 239 -23 899 259 53 91 chr12 90186841 90187216 -54095273 + L2 LINE L2 1957 2317 -997 253 183 62 124 chr12 90187227 90187297 -54095192 - MER69A DNA AcHobo -2350 176 117 2120 123 3 7 chr12 90187297 90187598 -54094891 + AluSx SINE Alu 1 300 -12 253 183 62 124 chr12 90187598 90187652 -54094837 - MER69A DNA AcHobo -2409 117 61 * 2224 112 64 0 chr12 90187629 90187942 -54094547 + LTR18A LTR ERVL 25 357 0 16628 179 6 10 chr12 90187956 90190715 -54091774 + HERVL18 LTR ERVL 9 2757 -3290 2674 149 0 2 chr12 90190704 90191107 -54091382 + HERVL18 LTR ERVL 5646 6047 0 * 696 102 0 10 chr12 90191112 90191210 -54091279 + LTR18A LTR ERVL 244 340 -17 25 31 0 0 chr12 90191527 90191559 -54090930 + AT_rich Low_complexity Low_complexity 1 32 0 183 80 0 0 chr12 90191868 90191893 -54090596 + (A)n Simple_repeat Simple_repeat 1 25 0 3311 159 2 16 chr12 90191988 90192565 -54089924 + L1PA16 LINE L1 5589 6157 -9 683 216 20 7 chr12 90192934 90193087 -54089402 + MER20 DNA MER1_type 6 160 -59 1523 169 22 4 chr12 90193088 90193355 -54089134 + MLT2B2 LTR ERVL 1 272 -243 6587 195 75 64 chr12 90193878 90195608 -54086881 + MER52A LTR ERV1 7 1755 0 781 196 36 134 chr12 90195613 90195889 -54086600 + MLT2B2 LTR ERVL 267 515 0 348 231 0 0 chr12 90195889 90195951 -54086538 + MER20 DNA MER1_type 157 218 -1 2153 63 3 33 chr12 90196314 90196614 -54085875 - AluY SINE Alu 0 311 21 1793 151 63 33 chr12 90196755 90197119 -54085370 - THE1C LTR MaLR 0 375 1 2038 92 40 0 chr12 90197397 90197697 -54084792 - AluY SINE Alu 0 311 1 25 0 0 0 chr12 90198011 90198036 -54084453 + AT_rich Low_complexity Low_complexity 1 25 0 407 315 103 14 chr12 90198519 90198732 -54083757 - MIR SINE MIR -11 251 20 443 310 119 31 chr12 90198846 90199072 -54083417 - MIR SINE MIR -4 258 13 207 100 0 0 chr12 90199312 90199342 -54083147 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2201 56 0 7 chr12 90199847 90200133 -54082356 + L1PA8 LINE L1 5886 6169 -3 3199 111 6 0 chr12 90200676 90201145 -54081344 - L1PA8 LINE L1 -2 6170 5699 243 81 0 0 chr12 90201145 90201182 -54081307 + L1PA8 LINE L1 5647 5683 -448 906 172 30 1 chr12 90201571 90201758 -54080731 + L1MA9 LINE L1 6027 6159 -5 9877 45 1 0 chr12 90202828 90204056 -54078433 - L1P LINE L1 -798 5348 4120 * 14837 42 1 1 chr12 90204052 90205907 -54076582 + L1P LINE L1 2258 4112 -2034 21 0 0 0 chr12 90205950 90205971 -54076518 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 90206291 90206327 -54076162 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr12 90207043 90207076 -54075413 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr12 90207876 90207906 -54074583 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr12 90209132 90209164 -54073325 + AT_rich Low_complexity Low_complexity 1 32 0 3822 39 0 0 chr12 90209431 90209891 -54072598 + L1PA5 LINE L1 5695 6154 0 283 314 8 0 chr12 90210739 90210860 -54071629 + L1M4 LINE L1 4133 4254 -1892 21 0 0 0 chr12 90211371 90211392 -54071097 + AT_rich Low_complexity Low_complexity 1 21 0 233 241 46 11 chr12 90211392 90211482 -54071007 + L1ME LINE L1 5747 5839 -331 22 35 0 0 chr12 90211741 90211770 -54070719 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 90211803 90211829 -54070660 + AT_rich Low_complexity Low_complexity 1 26 0 278 264 36 57 chr12 90212012 90212152 -54070337 + MIR SINE MIR 90 226 -36 192 77 0 0 chr12 90212409 90212435 -54070054 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2671 132 25 8 chr12 90212435 90212792 -54069697 - L1PB1 LINE L1 -10 6141 5773 201 74 0 0 chr12 90212792 90212819 -54069670 + (TA)n Simple_repeat Simple_repeat 1 27 0 2671 132 25 8 chr12 90212819 90212932 -54069557 - L1PB1 LINE L1 -378 5773 5663 9170 208 17 14 chr12 90213035 90214052 -54068437 - L1P5 LINE L1 -436 5715 4703 4480 68 3 2 chr12 90214052 90214630 -54067859 - L1PA7 LINE L1 -9 6145 5567 9170 208 17 14 chr12 90214630 90216374 -54066115 - L1P5 LINE L1 -1448 4703 2944 3587 204 36 19 chr12 90216391 90217188 -54065301 - L1MC1 LINE L1 -110 6503 5693 * 5293 237 53 26 chr12 90217186 90219827 -54062662 - L1MC1 LINE L1 -2011 4415 1712 22 35 0 0 chr12 90270017 90270046 -54012443 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr12 90270335 90270360 -54012129 + AT_rich Low_complexity Low_complexity 1 25 0 841 218 19 43 chr12 90270645 90270856 -54011633 + AluJo SINE Alu 1 206 -106 1374 275 103 14 chr12 90270873 90271291 -54011198 + LTR16B LTR ERVL 2 456 -8 2221 98 0 0 chr12 90271644 90271930 -54010559 + AluSg SINE Alu 8 293 -17 1214 263 27 37 chr12 90272666 90273076 -54009413 + MLT1C LTR MaLR 62 467 0 5055 207 48 34 chr12 90273514 90275212 -54007277 - L1MC2 LINE L1 0 6344 4617 593 265 232 28 chr12 90276085 90276443 -54006046 - LTR50 LTR ERVL -321 474 44 25 0 0 0 chr12 90276443 90276468 -54006021 + AT_rich Low_complexity Low_complexity 1 25 0 225 94 0 0 chr12 90277552 90277584 -54004905 + (TG)n Simple_repeat Simple_repeat 2 33 0 183 335 92 61 chr12 90278577 90278741 -54003748 - MER5A DNA MER1_type -7 182 14 280 328 146 12 chr12 90278766 90278937 -54003552 + MLT1H LTR MaLR 31 224 -325 325 196 49 108 chr12 90278981 90279083 -54003406 + MLT1H LTR MaLR 454 549 0 304 341 37 43 chr12 90279099 90279263 -54003226 - L1ME LINE L1 -496 5625 5463 868 162 26 103 chr12 90279678 90279912 -54002577 + MLT1C LTR MaLR 4 219 -248 1529 243 25 57 chr12 90279950 90280387 -54002102 + MLT1C-int LTR MaLR 949 1371 0 6701 277 51 54 chr12 90280746 90286947 -53995542 - MER50-int LTR ERV1 -1070 6021 97 229 323 0 0 chr12 90286947 90287012 -53995477 + GA-rich Low_complexity Low_complexity 1 65 0 411 248 41 8 chr12 90287016 90287137 -53995352 - MER50-int LTR ERV1 -7080 125 1 1196 290 86 56 chr12 90287178 90287772 -53994717 - MER50 LTR ERV1 -44 690 79 393 241 134 0 chr12 90287830 90287942 -53994547 - MER50 LTR ERV1 -607 127 1 1639 218 41 39 chr12 90287945 90288409 -53994080 + MLT1C LTR MaLR 1 465 -2 234 253 36 0 chr12 90288430 90288513 -53993976 - L1ME LINE L1 -1161 4985 4900 490 295 101 66 chr12 90288646 90289250 -53993239 - L1ME LINE L1 -1353 4793 4169 270 216 6 168 chr12 90290739 90290906 -53991583 + L2 LINE L2 3098 3237 -76 2674 202 58 8 chr12 90291111 90291734 -53990755 - L1MC3 LINE L1 -1 7784 7131 23 0 0 0 chr12 90291743 90291766 -53990723 + AT_rich Low_complexity Low_complexity 1 23 0 650 205 186 14 chr12 90291766 90291981 -53990508 - AluJo SINE Alu -12 300 49 242 191 0 0 chr12 90291985 90292032 -53990457 - Alu SINE Alu -87 215 169 1510 218 30 25 chr12 90292032 90292426 -53990063 - L1MC3 LINE L1 -690 7095 6700 323 260 40 6 chr12 90292490 90292663 -53989826 + (TA)n Simple_repeat Simple_repeat 2 180 0 1956 112 20 0 chr12 90293367 90293661 -53988828 + AluSx SINE Alu 1 300 -12 517 308 104 36 chr12 90294069 90294418 -53988071 + L1ME LINE L1 61 385 -5876 333 0 0 0 chr12 90294418 90294455 -53988034 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 517 308 104 36 chr12 90294455 90295535 -53986954 + L1ME LINE L1 385 1641 -4620 1758 124 57 86 chr12 90295657 90296043 -53986446 + THE1C LTR MaLR 1 375 0 854 280 81 9 chr12 90296297 90296754 -53985735 + L1ME LINE L1 2252 2741 -3339 180 0 0 0 chr12 90296764 90296784 -53985705 + (TA)n Simple_repeat Simple_repeat 2 21 0 353 307 57 0 chr12 90296795 90297007 -53985482 + L1ME LINE L1 2831 3054 -3026 287 28 0 0 chr12 90297036 90297072 -53985417 - L1MB7 LINE L1 -8 6176 6141 635 287 61 6 chr12 90297073 90297254 -53985235 - L1M4b LINE L1 -6254 605 415 312 214 32 24 chr12 90297272 90297398 -53985091 - L1MCb LINE L1 -1621 4943 4817 722 245 37 29 chr12 90297409 90297654 -53984835 - L1MA9 LINE L1 -38 6274 6028 * 2951 259 72 23 chr12 90297643 90298929 -53983560 - L1MCb LINE L1 -1713 4851 3504 2718 266 83 30 chr12 90298927 90300926 -53981563 - L1MCb LINE L1 -4218 2346 221 * 2531 160 2 23 chr12 90301156 90301593 -53980896 - MSTA LTR MaLR 0 428 1 295 273 40 20 chr12 90302107 90302206 -53980283 - L1ME3A LINE L1 -5 6165 6065 296 299 0 0 chr12 90302206 90302293 -53980196 - L1ME3A LINE L1 -64 6106 6020 227 153 0 85 chr12 90302481 90302540 -53979949 - MLT1I LTR MaLR -14 395 342 309 298 39 0 chr12 90302720 90302824 -53979665 - MLT1J2 LTR MaLR -307 143 36 24 0 0 0 chr12 90303567 90303591 -53978898 + AT_rich Low_complexity Low_complexity 1 24 0 248 77 26 0 chr12 90303617 90303656 -53978833 + (CA)n Simple_repeat Simple_repeat 2 41 0 184 230 14 122 chr12 90303947 90304021 -53978468 + MER5A DNA MER1_type 18 83 -106 186 0 57 29 chr12 90304186 90304221 -53978268 + (CAA)n Simple_repeat Simple_repeat 1 36 0 288 0 0 0 chr12 90305052 90305084 -53977405 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 21 0 0 0 chr12 90307024 90307045 -53975444 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 90307901 90307932 -53974557 + AT_rich Low_complexity Low_complexity 1 31 0 67 42 0 0 chr12 90308222 90308317 -53974172 + AT_rich Low_complexity Low_complexity 1 95 0 240 185 0 0 chr12 90309008 90309062 -53973427 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 185 278 83 46 chr12 90309205 90309313 -53973176 - MIR SINE MIR -46 216 105 180 0 0 0 chr12 90309497 90309517 -53972972 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr12 90309633 90309661 -53972828 + AT_rich Low_complexity Low_complexity 1 28 0 1966 142 140 10 chr12 90310232 90310611 -53971878 + MSTA LTR MaLR 1 425 -3 8351 186 25 15 chr12 90310611 90312225 -53970264 + MSTA-int LTR MaLR 17 1646 -5 1557 172 164 8 chr12 90312232 90312599 -53969890 + MSTA LTR MaLR 3 426 -2 225 0 0 0 chr12 90312636 90312661 -53969828 + (CA)n Simple_repeat Simple_repeat 2 26 0 343 321 29 21 chr12 90313133 90313273 -53969216 - MIR SINE MIR -44 218 78 203 231 15 15 chr12 90313440 90313505 -53968984 + (TTATA)n Simple_repeat Simple_repeat 2 66 0 309 131 16 16 chr12 90313721 90313782 -53968707 + MLT1I LTR MaLR 330 390 -19 1372 188 15 33 chr12 90313905 90314235 -53968254 - L1MA10 LINE L1 0 6334 6011 22 0 0 0 chr12 90315030 90315052 -53967437 + AT_rich Low_complexity Low_complexity 1 22 0 190 281 37 61 chr12 90315865 90315947 -53966542 + MIR3 SINE MIR 118 197 -11 27 29 0 0 chr12 90316398 90316432 -53966057 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr12 90316472 90316508 -53965981 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr12 90316641 90316671 -53965818 + AT_rich Low_complexity Low_complexity 1 30 0 618 172 108 13 chr12 90317366 90317523 -53964966 - L1MA8 LINE L1 -3 6288 6117 5597 176 38 7 chr12 90317527 90319559 -53962930 - L1MA4A LINE L1 -5 6298 4226 * 10893 228 55 36 chr12 90319533 90320514 -53961975 - L1 LINE L1 -1466 5382 4421 276 30 0 0 chr12 90320514 90320547 -53961942 + (TTG)n Simple_repeat Simple_repeat 1 33 0 10893 228 55 36 chr12 90320547 90322861 -53959628 - L1 LINE L1 -2427 4421 2097 2278 51 10 14 chr12 90322861 90323181 -53959308 - AluY SINE Alu 0 311 1 10893 228 55 36 chr12 90323181 90325315 -53957174 - L1 LINE L1 -4751 2097 4 754 161 71 6 chr12 90325316 90325484 -53957005 - L1MA8 LINE L1 -161 6130 5952 2152 176 45 47 chr12 90325505 90325977 -53956512 + L1MA8 LINE L1 5433 5903 -388 348 148 0 0 chr12 90328426 90328487 -53954002 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr12 90328720 90328741 -53953748 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr12 90328948 90328976 -53953513 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 90330665 90330688 -53951801 + AT_rich Low_complexity Low_complexity 1 23 0 1519 231 51 127 chr12 90331700 90332247 -53950242 - L1ME1 LINE L1 -5 6230 5643 1938 78 3 54 chr12 90332247 90332707 -53949782 - AluY SINE Alu 0 445 1 744 10 40 0 chr12 90332707 90332807 -53949682 + (TTTTA)n Simple_repeat Simple_repeat 1 104 0 403 145 121 0 chr12 90332807 90332890 -53949599 - FLAM_A SINE Alu -19 114 22 1519 231 51 127 chr12 90332890 90333292 -53949197 - L1ME1 LINE L1 -589 5646 5290 1510 250 39 89 chr12 90333289 90334023 -53948466 - L1ME1 LINE L1 -1984 4231 3536 * 1646 164 93 47 chr12 90334023 90334090 -53948399 - MSTA LTR MaLR 0 428 366 2778 16 0 0 chr12 90334090 90334404 -53948085 - AluYb8 SINE Alu -4 314 1 1646 164 93 47 chr12 90334404 90334745 -53947744 - MSTA LTR MaLR -62 366 1 1510 250 39 89 chr12 90334745 90334782 -53947707 - L1ME1 LINE L1 -2679 3536 3499 1398 263 23 41 chr12 90334778 90335623 -53946866 - L1ME1 LINE L1 -3394 2821 2034 * 36 53 0 0 chr12 90335663 90335720 -53946769 + AT_rich Low_complexity Low_complexity 1 57 0 1085 294 78 71 chr12 90335790 90336493 -53945996 - L1MEc LINE L1 -4002 2394 1697 189 0 0 0 chr12 90336493 90336514 -53945975 + (TG)n Simple_repeat Simple_repeat 2 22 0 1085 294 78 71 chr12 90336514 90337341 -53945148 - L1MEc LINE L1 -4699 1697 854 2001 40 48 4 chr12 90337633 90337884 -53944605 + AluY SINE Alu 22 283 -28 487 266 72 0 chr12 90340543 90340682 -53941807 - MLT1L LTR MaLR -46 569 421 180 0 0 0 chr12 90340769 90340789 -53941700 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 258 296 41 0 chr12 90341528 90341626 -53940863 - MIR SINE MIR -15 247 146 231 346 10 0 chr12 90342198 90342302 -53940187 + (CATA)n Simple_repeat Simple_repeat 2 106 0 827 0 57 0 chr12 90343553 90343676 -53938813 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 180 0 0 0 chr12 90343859 90343879 -53938610 + (CCA)n Simple_repeat Simple_repeat 1 20 0 339 289 33 20 chr12 90344407 90344559 -53937930 - ERVL LTR ERVL -1133 4631 4478 1393 249 61 33 chr12 90344614 90345105 -53937384 - MLT1D LTR MaLR 0 505 1 983 333 92 34 chr12 90345249 90345996 -53936493 - ERVL LTR ERVL -1570 4194 3404 2148 125 19 27 chr12 90346041 90346417 -53936072 + THE1C LTR MaLR 1 373 -2 404 329 40 69 chr12 90346528 90346832 -53935657 - L2 LINE L2 -5 3308 3014 * 518 341 49 71 chr12 90346828 90347065 -53935424 - L2 LINE L2 -467 2847 2621 1298 207 7 57 chr12 90347065 90347365 -53935124 - AluJb SINE Alu -27 285 1 518 341 49 71 chr12 90347365 90347534 -53934955 - L2 LINE L2 -693 2621 2450 632 332 15 0 chr12 90347626 90347822 -53934667 - MIR SINE MIR -62 200 2 2470 34 3 7 chr12 90348200 90348498 -53933991 + AluY SINE Alu 1 297 -14 1945 104 10 21 chr12 90350299 90350588 -53931901 + AluSc SINE Alu 3 288 -21 373 77 231 0 chr12 90351356 90351421 -53931068 + MADE1 DNA Mariner 1 80 0 312 278 188 30 chr12 90351428 90351561 -53930928 - MER5A DNA MER1_type 0 189 36 31 0 0 0 chr12 90351830 90351861 -53930628 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr12 90352091 90352130 -53930359 + AT_rich Low_complexity Low_complexity 1 39 0 243 280 20 20 chr12 90353224 90353324 -53929165 + L1P4 LINE L1 6 105 -5770 274 152 0 0 chr12 90353324 90353370 -53929119 + LTR19B LTR ERV1 1 46 -534 1143 272 23 17 chr12 90353374 90353727 -53928762 + L1P4 LINE L1 480 834 -5041 21821 145 11 40 chr12 90353728 90356723 -53925766 + L1P4 LINE L1 1724 4533 -1956 1996 149 7 0 chr12 90356723 90357025 -53925464 - AluSx SINE Alu -8 304 1 21821 145 11 40 chr12 90357025 90358459 -53924030 + L1P4 LINE L1 4533 6007 -482 6521 224 115 15 chr12 90358613 90360272 -53922217 + L1MC3 LINE L1 5210 7171 -614 183 80 0 0 chr12 90360272 90360297 -53922192 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 6521 224 115 15 chr12 90360297 90360965 -53921524 + L1MC3 LINE L1 7171 7770 -15 306 287 37 37 chr12 90360982 90361090 -53921399 - MIR SINE MIR -154 108 1 241 354 153 14 chr12 90362886 90363030 -53919459 + MIR SINE MIR 8 171 -91 23 33 0 0 chr12 90363091 90363121 -53919368 + AT_rich Low_complexity Low_complexity 1 30 0 287 366 136 14 chr12 90363178 90363664 -53918825 + L2 LINE L2 570 1114 -2200 471 292 15 41 chr12 90364238 90364433 -53918056 - MLT1K LTR MaLR -23 565 376 248 303 81 0 chr12 90365363 90365462 -53917027 + MIR SINE MIR 59 165 -97 26 50 0 0 chr12 90365983 90366023 -53916466 + AT_rich Low_complexity Low_complexity 1 40 0 10315 168 19 16 chr12 90366159 90369144 -53913345 + L1MA8 LINE L1 3291 6281 -10 703 209 13 7 chr12 90369860 90370013 -53912476 - AluSc SINE Alu -20 289 136 518 80 27 0 chr12 90370064 90370139 -53912350 - AluSc SINE Alu -190 119 43 7586 29 0 0 chr12 90371287 90372812 -53909677 + L1PA3 LINE L1 4628 6152 -3 280 371 99 0 chr12 90373061 90373212 -53909277 + L2 LINE L2 3107 3272 0 354 296 19 0 chr12 90374267 90374375 -53908114 + MIR SINE MIR 68 177 -85 201 294 25 76 chr12 90374472 90374591 -53907898 + MIR SINE MIR 74 186 -76 26 0 0 0 chr12 90374626 90374652 -53907837 + AT_rich Low_complexity Low_complexity 1 26 0 1959 117 9 44 chr12 90375028 90375344 -53907145 + AluSx SINE Alu 1 305 -7 22 35 0 0 chr12 90375647 90375676 -53906813 + AT_rich Low_complexity Low_complexity 1 29 0 747 338 21 11 chr12 90376489 90376776 -53905713 - MLT1I LTR MaLR -22 387 98 180 289 0 0 chr12 90377004 90377042 -53905447 - L2 LINE L2 -11 3261 3224 27 49 0 0 chr12 90377285 90377326 -53905163 + AT_rich Low_complexity Low_complexity 1 41 0 514 244 30 15 chr12 90377403 90377534 -53904955 + MER63 DNA MER1_type 2 760 -302 252 348 80 9 chr12 90378140 90378252 -53904237 + MIR3 SINE MIR 86 205 -3 184 209 209 35 chr12 90378560 90378646 -53903843 + MIR SINE MIR 70 170 -92 665 183 177 17 chr12 90378714 90378889 -53903600 - MER3 DNA MER1_type -5 204 2 542 287 125 9 chr12 90380068 90380284 -53902205 + MIR SINE MIR 2 242 -20 26 98 0 0 chr12 90380788 90380870 -53901619 + AT_rich Low_complexity Low_complexity 1 82 0 883 288 265 15 chr12 90380875 90381479 -53901010 - LTR50 LTR ERVL 0 795 41 384 281 9 9 chr12 90381588 90381702 -53900787 - MER81 DNA DNA 0 114 1 262 331 132 8 chr12 90383107 90383228 -53899261 - MIR3 SINE MIR -41 167 32 257 341 0 0 chr12 90383727 90383812 -53898677 + MIR SINE MIR 61 145 -63 598 316 69 10 chr12 90385590 90385881 -53896608 - MLT1H LTR MaLR -230 319 12 22 35 0 0 chr12 90386700 90386729 -53895760 + AT_rich Low_complexity Low_complexity 1 29 0 347 266 0 0 chr12 90386827 90386906 -53895583 + L2 LINE L2 3175 3253 -19 33 0 0 0 chr12 90387573 90387606 -53894883 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr12 90387864 90387885 -53894604 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 90387943 90387972 -53894517 + AT_rich Low_complexity Low_complexity 1 29 0 40 59 0 0 chr12 90388671 90388739 -53893750 + AT_rich Low_complexity Low_complexity 1 68 0 435 354 25 55 chr12 90388883 90389284 -53893205 - MLT1K LTR MaLR -4 584 196 2579 43 0 3 chr12 90389876 90390181 -53892308 + AluY SINE Alu 1 304 -7 241 417 28 19 chr12 90390196 90390407 -53892082 - L2 LINE L2 -277 3036 2824 357 319 17 9 chr12 90390564 90390680 -53891809 + MIR SINE MIR 116 232 -30 5882 166 20 25 chr12 90390680 90391664 -53890825 + Tigger1 DNA MER2_type 1 981 -1437 2102 116 3 13 chr12 90391664 90391965 -53890524 + AluSq SINE Alu 1 298 -15 5882 166 20 25 chr12 90391965 90392073 -53890416 + Tigger1 DNA MER2_type 981 1088 -1330 5858 33 3 0 chr12 90392074 90392777 -53889712 - L1PA4 LINE L1 -1 6154 5450 2100 39 19 0 chr12 90392777 90393114 -53889375 + L1PA4 LINE L1 5119 5460 -695 7375 168 24 3 chr12 90393114 90394433 -53888056 + Tigger1 DNA MER2_type 1071 2417 -1 243 255 0 59 chr12 90394904 90395006 -53887483 - L1MC4 LINE L1 -1333 6709 6614 189 274 0 0 chr12 90395012 90395096 -53887393 + (TA)n Simple_repeat Simple_repeat 2 85 0 325 272 0 22 chr12 90395104 90395196 -53887293 - L1MC4 LINE L1 -1339 6703 6614 360 214 34 22 chr12 90395205 90395294 -53887195 - L1MC4 LINE L1 -1340 6702 6613 332 250 0 52 chr12 90395316 90395412 -53887077 - L1MC4 LINE L1 -1339 6703 6613 360 267 11 0 chr12 90395449 90395539 -53886950 - L1MC4 LINE L1 -1339 6703 6613 378 237 0 21 chr12 90395562 90395655 -53886834 - L1MC4 LINE L1 -1339 6703 6613 306 138 0 0 chr12 90395656 90395714 -53886775 + (TA)n Simple_repeat Simple_repeat 2 59 0 848 223 0 17 chr12 90395714 90395889 -53886600 + Tigger1 DNA MER2_type 2022 2193 -225 204 125 0 0 chr12 90395899 90395931 -53886558 + (TATG)n Simple_repeat Simple_repeat 3 34 0 21 36 0 0 chr12 90396319 90396347 -53886142 + AT_rich Low_complexity Low_complexity 1 28 0 627 282 57 33 chr12 90396408 90396653 -53885836 - MIR SINE MIR -10 252 2 2483 107 3 27 chr12 90396776 90397149 -53885340 + THE1B LTR MaLR 1 364 0 2438 120 19 0 chr12 90397301 90397669 -53884820 + THE1C LTR MaLR 1 375 0 2254 96 18 21 chr12 90400441 90400776 -53881713 + L1PA11 LINE L1 5839 6172 -2 1509 178 7 35 chr12 90400790 90401077 -53881412 - AluJo SINE Alu -33 279 1 22 35 0 0 chr12 90401472 90401501 -53880988 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 90401599 90401625 -53880864 + AT_rich Low_complexity Low_complexity 1 26 0 1977 84 0 0 chr12 90402498 90402772 -53879717 - L1PA13 LINE L1 0 6163 5890 853 20 0 0 chr12 90402845 90402944 -53879545 + L1PA3 LINE L1 6054 6152 -3 205 152 43 0 chr12 90402947 90402993 -53879496 + (TAA)n Simple_repeat Simple_repeat 2 49 0 2114 180 0 5 chr12 90403312 90403679 -53878810 + MLT1A1 LTR MaLR 1 365 0 2137 95 0 26 chr12 90405249 90405555 -53876934 - AluSp SINE Alu -15 298 1 306 0 0 0 chr12 90407329 90407363 -53875126 + (CA)n Simple_repeat Simple_repeat 1 34 0 1039 293 122 41 chr12 90408150 90408980 -53873509 - L2 LINE L2 -16 3297 2403 327 25 0 0 chr12 90409363 90409403 -53873086 + (GA)n Simple_repeat Simple_repeat 1 40 0 252 86 0 0 chr12 90410003 90410038 -53872451 + (TG)n Simple_repeat Simple_repeat 2 36 0 284 203 21 182 chr12 90410121 90410264 -53872225 - L1ME3 LINE L1 -81 6081 5962 23 0 0 0 chr12 90412684 90412707 -53869782 + AT_rich Low_complexity Low_complexity 1 23 0 1965 223 41 14 chr12 90412831 90413338 -53869151 - L1ME1 LINE L1 -5 6230 5710 2023 257 132 50 chr12 90413351 90413945 -53868544 - L1ME1 LINE L1 -1314 4901 4357 2046 127 26 81 chr12 90413945 90414330 -53868159 - THE1B LTR MaLR 0 364 1 2023 257 132 50 chr12 90414330 90415087 -53867402 - L1ME1 LINE L1 -1858 4357 3439 2029 154 0 0 chr12 90415664 90415970 -53866519 - AluSx SINE Alu -4 308 3 281 283 226 19 chr12 90416197 90416356 -53866133 + MIR SINE MIR 54 245 -17 186 103 0 0 chr12 90416416 90416445 -53866044 + (TTC)n Simple_repeat Simple_repeat 2 30 0 699 250 36 10 chr12 90416448 90416640 -53865849 + MER58C DNA MER1_type 2 198 -17 28 29 0 0 chr12 90416669 90416704 -53865785 + AT_rich Low_complexity Low_complexity 1 35 0 1712 247 140 14 chr12 90417183 90417733 -53864756 + MLT1E3 LTR MaLR 6 624 0 467 345 26 5 chr12 90418415 90418614 -53863875 - MIR SINE MIR -40 222 8 1226 284 93 40 chr12 90418886 90420301 -53862188 - L1ME1 LINE L1 -3302 2913 1458 35 88 0 0 chr12 90420477 90420568 -53861921 + AT_rich Low_complexity Low_complexity 1 91 0 332 137 27 0 chr12 90420682 90420755 -53861734 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 272 253 0 27 chr12 90420977 90421052 -53861437 + L2 LINE L2 3239 3311 -2 225 191 0 0 chr12 90422119 90422166 -53860323 + T-rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr12 90422839 90422862 -53859627 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 90423890 90423919 -53858570 + AT_rich Low_complexity Low_complexity 1 29 0 396 234 44 101 chr12 90425367 90425525 -53856964 - MIR SINE MIR -7 255 107 23 0 0 0 chr12 90425529 90425552 -53856937 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 90425561 90425589 -53856900 + AT_rich Low_complexity Low_complexity 1 28 0 841 287 111 7 chr12 90426291 90426598 -53855891 + LTR16A LTR ERVL 107 445 -5 1385 75 0 0 chr12 90427163 90427337 -53855152 - AluSc SINE Alu -4 305 132 284 247 0 74 chr12 90628372 90628453 -53654036 + L2 LINE L2 3237 3311 -2 187 295 74 25 chr12 90629274 90629396 -53653093 - MIR SINE MIR -55 207 80 189 0 0 0 chr12 90630108 90630129 -53652360 + (GAA)n Simple_repeat Simple_repeat 2 22 0 2111 127 3 0 chr12 90630682 90630982 -53651507 + AluSg SINE Alu 1 301 -9 917 255 28 49 chr12 90631994 90632421 -53650068 - LTR37B LTR ERV1 -50 418 1 21 0 0 0 chr12 90633309 90633330 -53649159 + AT_rich Low_complexity Low_complexity 1 21 0 1303 108 0 10 chr12 90633827 90634022 -53648467 + L1PA6 LINE L1 5955 6147 -7 366 267 20 114 chr12 90634599 90634689 -53647800 + MIR SINE MIR 75 138 -124 1563 176 37 0 chr12 90634689 90634985 -53647504 + AluSx SINE Alu 1 306 0 366 267 20 114 chr12 90634985 90635095 -53647394 + MIR SINE MIR 138 257 -5 206 326 65 29 chr12 90635769 90635907 -53646582 - MIR SINE MIR -115 147 5 1478 270 14 45 chr12 90636509 90636998 -53645491 - MLT1D LTR MaLR -4 501 28 506 139 0 0 chr12 90637535 90637614 -53644875 - MADE1 DNA Mariner -1 79 1 1925 211 42 105 chr12 90637917 90638735 -53643754 + LTR41 LTR ERVL 1 766 -7 415 268 0 24 chr12 90638927 90639054 -53643435 - MER103 DNA DNA -40 126 3 24 0 0 0 chr12 90639448 90639472 -53643017 + AT_rich Low_complexity Low_complexity 1 24 0 634 281 116 63 chr12 90640264 90640695 -53641794 + LTR16A1 LTR ERVL 1 454 -3 206 171 53 26 chr12 90640938 90641014 -53641475 + (TTTAA)n Simple_repeat Simple_repeat 3 80 0 430 176 176 59 chr12 90641304 90641436 -53641053 + FLAM_A SINE Alu 2 145 0 1017 140 13 0 chr12 90641692 90641849 -53640640 - AluSx SINE Alu -147 165 7 2084 17 0 4 chr12 90641997 90642235 -53640254 + AluYa5 SINE Alu 65 301 -10 257 197 14 0 chr12 90642302 90642373 -53640116 + GA-rich Low_complexity Low_complexity 3 74 0 702 203 65 0 chr12 90642536 90642689 -53639800 + MER3 DNA MER1_type 1 163 -46 37 52 0 0 chr12 90642691 90642749 -53639740 + AT_rich Low_complexity Low_complexity 1 58 0 31 58 0 0 chr12 90642808 90642860 -53639629 + AT_rich Low_complexity Low_complexity 1 52 0 213 190 30 0 chr12 90642878 90642978 -53639511 + (TA)n Simple_repeat Simple_repeat 2 104 0 306 0 0 0 chr12 90642978 90643012 -53639477 + (CA)n Simple_repeat Simple_repeat 2 35 0 451 179 137 0 chr12 90643018 90643113 -53639376 + MLT1E3 LTR MaLR 517 624 0 1205 241 169 10 chr12 90643210 90643652 -53638837 + MLT1G1 LTR MaLR 8 592 -3 1163 201 4 69 chr12 90644193 90644467 -53638022 - AluJo SINE Alu -53 259 4 1769 215 5 3 chr12 90645097 90645233 -53637256 - L1PB4 LINE L1 -5 6151 6016 2691 174 4 63 chr12 90645233 90646029 -53636460 - L1PA11 LINE L1 -160 6014 5278 612 134 0 10 chr12 90646264 90646361 -53636128 + MER4A LTR ERV1 3 98 -566 1826 102 164 80 chr12 90646361 90646734 -53635755 + MER4A LTR ERV1 261 664 0 305 255 13 13 chr12 90646767 90646916 -53635573 + (TATATG)n Simple_repeat Simple_repeat 2 150 0 289 382 73 0 chr12 90647660 90647783 -53634706 + L2 LINE L2 3118 3249 -23 204 97 0 0 chr12 90648053 90648084 -53634405 + (CA)n Simple_repeat Simple_repeat 1 31 0 21 57 0 0 chr12 90648480 90648515 -53633974 + AT_rich Low_complexity Low_complexity 1 35 0 192 206 48 79 chr12 90648543 90648606 -53633883 - L2 LINE L2 -21 3292 3232 3268 94 22 18 chr12 90648710 90649209 -53633280 - L1PA13 LINE L1 -1 6162 5662 2326 110 27 3 chr12 90649220 90649585 -53632904 + L1PA13 LINE L1 5285 5658 -505 1568 193 72 45 chr12 90649697 90650071 -53632418 - MLT1B LTR MaLR 0 390 7 338 219 0 0 chr12 90650390 90650454 -53632035 + MIR SINE MIR 125 188 -74 238 303 25 8 chr12 90650568 90650687 -53631802 + (TTA)n Simple_repeat Simple_repeat 2 122 0 * 281 256 12 23 chr12 90650613 90650699 -53631790 + (CTA)n Simple_repeat Simple_repeat 2 86 0 1874 141 0 33 chr12 90650791 90651095 -53631394 - AluSq SINE Alu -19 294 1 709 344 91 27 chr12 90651207 90651649 -53630840 - L2 LINE L2 -1 3312 2843 560 331 69 22 chr12 90651788 90652063 -53630426 - L2 LINE L2 -496 2818 2531 229 355 70 15 chr12 90652390 90652590 -53629899 + MIR SINE MIR 41 251 -11 3543 106 29 11 chr12 90653652 90654210 -53628279 + L1MA1 LINE L1 5728 6295 -7 291 306 52 22 chr12 90654642 90654776 -53627713 + L2 LINE L2 3171 3308 -5 279 0 0 0 chr12 90654783 90654814 -53627675 + (CA)n Simple_repeat Simple_repeat 2 32 0 201 357 24 0 chr12 90655571 90655655 -53626834 + MIR SINE MIR 3 88 -174 23 54 0 0 chr12 90656660 90656697 -53625792 + AT_rich Low_complexity Low_complexity 1 37 0 192 259 56 19 chr12 90656773 90656827 -53625662 + L2 LINE L2 3213 3268 -4 1171 266 108 37 chr12 90657707 90658444 -53624045 + L1MC5 LINE L1 7107 7896 -65 1153 75 0 0 chr12 90658445 90658591 -53623898 + AluY SINE Alu 155 300 -11 393 327 71 19 chr12 90660223 90660434 -53622055 + MIR SINE MIR 33 254 -8 259 301 19 29 chr12 90661390 90661493 -53620996 + L2 LINE L2 2696 2797 -517 477 320 29 29 chr12 90661511 90661717 -53620772 + MLT1I LTR MaLR 14 219 -190 604 308 272 17 chr12 90662298 90662898 -53619591 - L2 LINE L2 -625 2689 1937 362 291 0 12 chr12 90662904 90662990 -53619499 + L2 LINE L2 3187 3271 -42 283 287 11 11 chr12 90663264 90663351 -53619138 + L2 LINE L2 3223 3309 -4 182 253 111 40 chr12 90663725 90663824 -53618665 + L3 LINE CR1 559 664 -913 1969 105 19 35 chr12 90663882 90664196 -53618293 - AluSq SINE Alu 0 313 5 21 0 0 0 chr12 90664742 90664763 -53617726 + AT_rich Low_complexity Low_complexity 1 21 0 1756 242 65 25 chr12 90665788 90666309 -53616180 - MLT1F LTR MaLR 0 542 1 1673 251 47 7 chr12 90666771 90667197 -53615292 + MLT1C LTR MaLR 1 443 -24 1056 238 48 4 chr12 90667844 90668179 -53614310 - MER93a LTR ERV1 0 402 1 595 183 0 0 chr12 90669639 90669759 -53612730 - L1MA4 LINE L1 -6 6294 6175 1387 206 21 93 chr12 90670431 90670916 -53611573 - MER65C LTR ERV1 -11 450 1 242 279 33 98 chr12 90672421 90672543 -53609946 - MIR SINE MIR -117 145 32 329 271 33 57 chr12 90672715 90672837 -53609652 + L2 LINE L2 3194 3312 -1 21 0 0 0 chr12 90672977 90672998 -53609491 + AT_rich Low_complexity Low_complexity 1 21 0 443 290 115 20 chr12 90673081 90673523 -53608966 - L1ME4a LINE L1 -6 6115 5632 22 56 0 0 chr12 90673685 90673721 -53608768 + AT_rich Low_complexity Low_complexity 1 36 0 21 95 0 0 chr12 90673741 90673804 -53608685 + AT_rich Low_complexity Low_complexity 1 63 0 3415 107 44 4 chr12 90674542 90675047 -53607442 + LTR17 LTR ERV1 256 780 0 14304 64 3 2 chr12 90675078 90676878 -53605611 + HERV17 LTR ERV1 1952 3754 -4872 13994 61 2 2 chr12 90676857 90678599 -53603890 + HERV17 LTR ERV1 5405 7147 -1479 * 299 51 0 0 chr12 90678595 90678634 -53603855 + HERV17 LTR ERV1 7510 7548 -1078 * 2354 58 0 3 chr12 90678624 90678917 -53603572 + HERV17 LTR ERV1 8335 8626 0 2361 98 0 6 chr12 90678917 90679245 -53603244 + LTR17 LTR ERV1 1 326 -454 25 0 0 0 chr12 90679245 90679270 -53603219 + AT_rich Low_complexity Low_complexity 1 25 0 997 303 141 3 chr12 90679654 90680024 -53602465 - MLT1H LTR MaLR -128 421 1 710 243 22 6 chr12 90680635 90680816 -53601673 + MLT1G LTR MaLR 405 588 -2 2339 84 3 3 chr12 90681321 90681632 -53600857 - AluY SINE Alu 0 311 1 240 219 64 92 chr12 90681697 90681934 -53600555 + MLT1G LTR MaLR 34 275 -267 536 240 16 0 chr12 90682020 90682141 -53600348 + MLT1G LTR MaLR 468 590 0 2293 134 11 16 chr12 90682297 90682663 -53599826 + THE1B LTR MaLR 1 364 0 183 42 0 0 chr12 90682724 90682748 -53599741 + (CA)n Simple_repeat Simple_repeat 1 24 0 645 315 91 17 chr12 90683410 90683651 -53598838 + MIR SINE MIR 4 262 0 689 255 41 66 chr12 90683763 90684006 -53598483 - MIR SINE MIR -21 241 5 545 333 126 34 chr12 90684204 90684752 -53597737 - L2 LINE L2 -13 3300 2705 24 32 0 0 chr12 90684971 90685002 -53597487 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 90685245 90685266 -53597223 + AT_rich Low_complexity Low_complexity 1 21 0 199 125 0 0 chr12 90685465 90685497 -53596992 - MIR SINE MIR -145 117 86 301 319 52 31 chr12 90685787 90685978 -53596511 + MLT1J1 LTR MaLR 78 272 -174 1962 231 55 20 chr12 90685992 90686481 -53596008 + MER67D LTR ERV1 1 506 -8 198 0 0 0 chr12 90686519 90686541 -53595948 + (T)n Simple_repeat Simple_repeat 1 22 0 2264 111 7 0 chr12 90686690 90686996 -53595493 - AluSg SINE Alu 0 310 3 524 333 86 53 chr12 90688757 90689213 -53593276 - MLT1K LTR MaLR -30 558 88 306 80 0 0 chr12 90689235 90689285 -53593204 + L1MA3 LINE L1 6256 6305 0 1834 142 7 10 chr12 90689333 90689628 -53592861 - AluSx SINE Alu -18 294 1 424 335 72 27 chr12 90691803 90692066 -53590423 - MLT1K LTR MaLR -5 583 309 2079 116 0 0 chr12 90692531 90692806 -53589683 + AluSg SINE Alu 1 275 -35 180 0 0 0 chr12 90692827 90692847 -53589642 + (TA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr12 90692846 90692866 -53589623 + (TG)n Simple_repeat Simple_repeat 1 20 0 2031 124 0 0 chr12 90693337 90693612 -53588877 + AluSg SINE Alu 1 275 -35 180 0 0 0 chr12 90693633 90693653 -53588836 + (TA)n Simple_repeat Simple_repeat 2 21 0 353 267 0 0 chr12 90693653 90693743 -53588746 - L1MC4 LINE L1 -1339 6703 6614 1340 101 42 0 chr12 90694155 90694344 -53588145 - AluSp SINE Alu -10 303 107 306 310 75 31 chr12 90694482 90694708 -53587781 + HAL1 LINE L1 822 1057 -1450 521 235 124 68 chr12 90694727 90695149 -53587340 - L1M4 LINE L1 -840 5306 4858 818 301 65 46 chr12 90695169 90695584 -53586905 - L1ME LINE L1 -5444 626 204 2094 176 122 35 chr12 90695584 90696045 -53586444 + LTR69 LTR ERVL 1 501 -87 671 206 88 0 chr12 90696045 90696205 -53586284 - FRAM SINE Alu -8 168 1 445 195 11 11 chr12 90696205 90696292 -53586197 + LTR69 LTR ERVL 502 588 0 594 226 30 37 chr12 90696296 90696460 -53586029 - L1ME LINE L1 -5867 203 41 1790 262 25 27 chr12 90698423 90698977 -53583512 + HsTC2a DNA Tc2 2 554 -190 210 71 0 0 chr12 90698977 90699005 -53583484 + (TG)n Simple_repeat Simple_repeat 1 28 0 381 256 232 12 chr12 90699192 90699360 -53583129 + MIR SINE MIR 20 224 -38 233 29 29 0 chr12 90699654 90699688 -53582801 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2229 91 0 0 chr12 90699690 90699975 -53582514 - AluSc SINE Alu -24 285 1 24 0 0 0 chr12 90700359 90700383 -53582106 + AT_rich Low_complexity Low_complexity 1 24 0 793 142 40 7 chr12 90700504 90700652 -53581837 - L1MA5A LINE L1 -390 5907 5755 * 2200 132 10 23 chr12 90700627 90701020 -53581469 + L1MA5A LINE L1 5904 6291 -6 270 283 235 12 chr12 90701961 90702127 -53580362 - L2 LINE L2 0 3313 3111 608 305 141 15 chr12 90703270 90703611 -53578878 - L2 LINE L2 0 3313 2930 860 223 5 68 chr12 90703690 90703910 -53578579 - MIR SINE MIR -21 241 36 567 217 29 143 chr12 90703951 90704223 -53578266 - MLT1D LTR MaLR -264 241 1 890 263 46 46 chr12 90705139 90705596 -53576893 - MER20B DNA MER1_type -64 719 263 2816 163 11 0 chr12 90705632 90706110 -53576379 - L1MB1 LINE L1 -5 6163 5681 23 68 0 0 chr12 90707561 90707605 -53574884 + AT_rich Low_complexity Low_complexity 1 44 0 30 0 0 0 chr12 90707638 90707668 -53574821 + AT_rich Low_complexity Low_complexity 1 30 0 846 260 95 51 chr12 90707834 90708290 -53574199 - L2 LINE L2 -83 3230 2760 205 296 62 51 chr12 90708518 90708694 -53573795 + MER5B DNA MER1_type 1 178 0 607 247 160 0 chr12 90708710 90708860 -53573629 + MER5A DNA MER1_type 9 182 -7 1932 137 26 54 chr12 90709211 90709597 -53572892 + THE1C LTR MaLR 1 375 0 7893 130 59 97 chr12 90709597 90711239 -53571250 + THE1C-int LTR MaLR 1 1580 0 1905 149 27 29 chr12 90711239 90711615 -53570874 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr12 90711869 90711892 -53570597 + AT_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr12 90712104 90712132 -53570357 + (A)n Simple_repeat Simple_repeat 1 28 0 25 31 0 0 chr12 90713249 90713281 -53569208 + AT_rich Low_complexity Low_complexity 1 32 0 296 338 52 45 chr12 90714436 90714590 -53567899 + MER5A DNA MER1_type 35 189 0 311 253 54 54 chr12 90716094 90716260 -53566229 + L1MC5 LINE L1 7742 7907 -54 22 0 0 0 chr12 90716984 90717006 -53565483 + AT_rich Low_complexity Low_complexity 1 22 0 750 286 73 48 chr12 90717225 90717332 -53565157 - LTR50 LTR ERVL -24 771 668 1912 99 65 0 chr12 90717332 90717595 -53564894 + AluSg SINE Alu 1 280 -30 750 286 73 48 chr12 90717595 90717942 -53564547 - LTR50 LTR ERVL -127 668 388 228 170 38 0 chr12 90717998 90718051 -53564438 - LTR50 LTR ERVL -721 74 20 288 0 0 0 chr12 90718371 90718403 -53564086 + (CA)n Simple_repeat Simple_repeat 2 33 0 578 297 0 7 chr12 90718488 90718643 -53563846 + MER63A DNA MER1_type 54 207 -3 401 82 0 0 chr12 90718880 90718929 -53563560 + (A)n Simple_repeat Simple_repeat 1 49 0 432 0 0 0 chr12 90720261 90720309 -53562180 + (A)n Simple_repeat Simple_repeat 1 48 0 468 284 16 8 chr12 90720379 90720506 -53561983 + ERVL LTR ERVL 5198 5325 -439 195 265 44 29 chr12 90720527 90720595 -53561894 + L2 LINE L2 3244 3312 -1 220 334 109 23 chr12 90722112 90722414 -53560075 + L2 LINE L2 2636 2963 -351 2185 87 0 14 chr12 90722426 90722609 -53559880 - AluSq SINE Alu 0 326 148 1174 95 6 0 chr12 90722609 90722778 -53559711 + L1PA5 LINE L1 5984 6153 -1 2185 87 0 14 chr12 90722778 90722924 -53559565 - AluSq SINE Alu -178 148 1 22 0 0 0 chr12 90722932 90722954 -53559535 + AT_rich Low_complexity Low_complexity 1 22 0 673 252 92 50 chr12 90722955 90724334 -53558155 - L1MC4a LINE L1 -4 7816 6458 376 297 89 64 chr12 90724650 90724852 -53557637 + MIR SINE MIR 53 259 -3 22 56 0 0 chr12 90725241 90725277 -53557212 + AT_rich Low_complexity Low_complexity 1 36 0 34 24 0 0 chr12 90725796 90725837 -53556652 + AT_rich Low_complexity Low_complexity 1 41 0 657 301 53 31 chr12 90726052 90726278 -53556211 - MIR SINE MIR 0 262 32 13188 149 30 14 chr12 90726300 90728676 -53553813 + Tigger1 DNA MER2_type 1 2415 -3 337 382 132 21 chr12 90728907 90729187 -53553302 - L2 LINE L2 -28 3244 2934 22 56 0 0 chr12 90730337 90730373 -53552116 + AT_rich Low_complexity Low_complexity 1 36 0 215 254 17 0 chr12 90731055 90731074 -53551415 + A-rich Low_complexity Low_complexity 2 19 -42 873 216 6 11 chr12 90731074 90731250 -53551239 + FAM SINE Alu 1 175 0 215 254 17 0 chr12 90731250 90731289 -53551200 + A-rich Low_complexity Low_complexity 19 61 0 625 187 11 22 chr12 90731289 90731471 -53551018 + GA-rich Low_complexity Low_complexity 1 180 0 1013 85 23 17 chr12 90731472 90731648 -53550841 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 313 211 22 33 chr12 90731664 90731754 -53550735 + L1MCa LINE L1 2316 2404 -4022 2260 171 40 27 chr12 90733088 90733539 -53548950 - MSTB2 LTR MaLR 0 457 1 259 297 20 30 chr12 90733583 90733684 -53548805 - MER5B DNA MER1_type -3 175 76 2193 157 8 13 chr12 90733688 90734065 -53548424 + THE1C LTR MaLR 1 375 0 4598 135 18 20 chr12 90734357 90734400 -53548089 - L1MA2 LINE L1 0 7723 7681 2033 176 8 24 chr12 90734400 90734770 -53547719 + THE1B LTR MaLR 1 364 0 4598 135 18 20 chr12 90734770 90735557 -53546932 - L1MA2 LINE L1 -42 7681 6895 873 188 0 0 chr12 90735557 90735727 -53546762 - L1MA2 LINE L1 -1318 6247 6078 19079 182 39 13 chr12 90735728 90739503 -53542986 - L1MA2 LINE L1 -1821 5744 1773 259 43 22 22 chr12 90739503 90739549 -53542940 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 19079 182 39 13 chr12 90739549 90741358 -53541131 - L1MA2 LINE L1 -5792 1773 13 2450 174 104 32 chr12 90741960 90742556 -53539933 + L1MA9 LINE L1 5645 6283 -29 281 175 32 0 chr12 90742557 90742620 -53539869 + L1MA9 LINE L1 6218 6282 -30 659 239 87 30 chr12 90745135 90745466 -53537023 + MLT1H LTR MaLR 120 546 -9 351 152 61 15 chr12 90745484 90745550 -53536939 + MER46C DNA MER2_type 259 327 -11 183 100 0 0 chr12 90745814 90745844 -53536645 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1482 204 7 4 chr12 90745852 90746131 -53536358 - AluJo SINE Alu -32 280 1 25 51 0 0 chr12 90747002 90747041 -53535448 + AT_rich Low_complexity Low_complexity 1 39 0 271 63 0 95 chr12 90747193 90747256 -53535233 - L1MC5 LINE L1 -287 7674 7618 1665 141 0 0 chr12 90747427 90747669 -53534820 - AluSq SINE Alu -71 242 1 224 333 111 15 chr12 90747842 90747977 -53534512 + MIR SINE MIR 103 250 -12 3824 155 45 9 chr12 90748343 90749033 -53533456 - L1MC1 LINE L1 -11 6322 5608 382 335 26 20 chr12 90749614 90749766 -53532723 + MIR SINE MIR 2 154 -108 22 70 0 0 chr12 90750301 90750344 -53532145 + AT_rich Low_complexity Low_complexity 1 43 0 409 309 66 17 chr12 90751359 90751540 -53530949 - MIR SINE MIR -62 200 11 219 233 0 0 chr12 90752099 90752142 -53530347 + (CA)n Simple_repeat Simple_repeat 2 44 0 2511 48 0 19 chr12 90752227 90752537 -53529952 + AluY SINE Alu 1 304 -7 249 199 46 30 chr12 90753285 90753416 -53529073 + (TATAA)n Simple_repeat Simple_repeat 5 137 0 1954 119 3 23 chr12 90754920 90755222 -53527267 + AluSg SINE Alu 1 296 -14 21 36 0 0 chr12 90755248 90755276 -53527213 + AT_rich Low_complexity Low_complexity 1 28 0 872 140 0 0 chr12 90755935 90756078 -53526411 + L1MA4 LINE L1 6151 6293 -7 310 285 83 76 chr12 90757215 90757359 -53525130 + MIR SINE MIR 15 159 -103 397 277 158 17 chr12 90757438 90757615 -53524874 - MIR SINE MIR -49 213 12 423 0 0 0 chr12 90758963 90759010 -53523479 + (TA)n Simple_repeat Simple_repeat 1 47 0 473 308 43 0 chr12 90760474 90760659 -53521830 + L2 LINE L2 2277 2469 -845 633 299 77 69 chr12 90760814 90761279 -53521210 + L2 LINE L2 2845 3313 0 28 0 0 0 chr12 90761497 90761525 -53520964 + AT_rich Low_complexity Low_complexity 1 28 0 211 169 0 34 chr12 90761938 90761997 -53520492 + T-rich Low_complexity Low_complexity 4 60 0 211 331 58 25 chr12 90762466 90762587 -53519902 + L2 LINE L2 2924 3048 -224 1958 116 10 3 chr12 90762635 90762929 -53519560 - AluSx SINE Alu -16 296 1 268 290 168 9 chr12 90763089 90763196 -53519293 + L2 LINE L2 3143 3266 -6 625 240 48 43 chr12 90763711 90763919 -53518570 + L2 LINE L2 3105 3313 0 272 325 94 38 chr12 90764227 90764387 -53518102 + MIR SINE MIR 52 220 -42 519 317 55 42 chr12 90764426 90764738 -53517751 - L3 LINE CR1 -14 1563 1248 236 291 59 83 chr12 90764935 90765189 -53517300 - L3 LINE CR1 -608 969 722 23 0 0 0 chr12 90765806 90765829 -53516660 + AT_rich Low_complexity Low_complexity 1 23 0 480 349 15 35 chr12 90765908 90766169 -53516320 + MIR SINE MIR 1 256 -6 216 135 0 0 chr12 90766239 90766276 -53516213 + (CTA)n Simple_repeat Simple_repeat 1 37 0 2167 126 0 0 chr12 90767602 90767911 -53514578 - AluSx SINE Alu -3 309 1 753 273 99 3 chr12 90767989 90768282 -53514207 + MER33 DNA MER1_type 3 323 -1 24 0 0 0 chr12 90768299 90768323 -53514166 + AT_rich Low_complexity Low_complexity 1 24 0 637 215 0 0 chr12 90770240 90770370 -53512119 - AluJb SINE Alu -4 308 179 3220 173 5 22 chr12 90771124 90771249 -53511240 + L1PB3 LINE L1 5563 5689 -465 1576 119 3 119 chr12 90771249 90771602 -53510887 + AluJb SINE Alu 1 312 0 3220 173 5 22 chr12 90771602 90772073 -53510416 + L1PB3 LINE L1 5689 6149 -5 1549 173 93 75 chr12 90772083 90772516 -53509973 + MER39 LTR ERV1 28 517 -190 2276 84 0 13 chr12 90772516 90772826 -53509663 + AluY SINE Alu 3 308 -3 1549 173 93 75 chr12 90772826 90772931 -53509558 + MER39 LTR ERV1 517 619 -88 670 335 16 4 chr12 90772935 90773180 -53509309 - MIR SINE MIR -11 251 4 22 0 0 0 chr12 90775442 90775464 -53507025 + AT_rich Low_complexity Low_complexity 1 22 0 1492 187 27 20 chr12 90776098 90776398 -53506091 - AluJb SINE Alu -10 302 1 198 326 34 22 chr12 90776419 90776508 -53505981 - L2 LINE L2 -56 3257 3168 480 18 0 0 chr12 90777275 90777332 -53505157 - U2 snRNA snRNA -131 57 1 270 313 45 67 chr12 90777614 90777748 -53504741 + MIR SINE MIR 2 132 -76 2352 98 0 0 chr12 90778645 90778950 -53503539 - AluSg1 SINE Alu -2 307 3 395 275 0 11 chr12 90779540 90779631 -53502858 + MER58A DNA MER1_type 1 90 -17 683 232 106 35 chr12 90779631 90779829 -53502660 + MER58A DNA MER1_type 12 223 -1 1771 164 0 25 chr12 90780214 90780531 -53501958 + AluSx SINE Alu 1 309 -3 511 294 97 41 chr12 90780948 90781365 -53501124 + HAL1b LINE L1 460 916 -432 1848 145 14 3 chr12 90781365 90781672 -53500817 + AluSx SINE Alu 1 310 0 511 294 97 41 chr12 90781672 90781791 -53500698 + HAL1b LINE L1 916 1027 -321 578 271 53 0 chr12 90781809 90781942 -53500547 + MIR SINE MIR 25 164 -98 519 304 92 58 chr12 90782137 90782618 -53499871 - MLT1H LTR MaLR 0 549 53 2111 261 63 21 chr12 90783227 90784187 -53498302 - L1M4 LINE L1 -1437 4709 3709 262 230 23 0 chr12 90784194 90784281 -53498208 + L1MC4 LINE L1 6615 6703 -1339 299 231 0 22 chr12 90784307 90784398 -53498091 - L1MC4 LINE L1 -1339 6703 6615 776 320 25 3 chr12 90784453 90784818 -53497671 - L1M4 LINE L1 -2535 3611 3239 23 0 0 0 chr12 90784916 90784939 -53497550 + AT_rich Low_complexity Low_complexity 1 23 0 2320 226 54 28 chr12 90785615 90786296 -53496193 + L1MD2 LINE L1 5450 6148 -211 245 254 119 30 chr12 90786301 90786435 -53496054 + L1MD3 LINE L1 7832 7977 -18 978 63 0 0 chr12 90786578 90786705 -53495784 + L1PA5 LINE L1 6026 6152 -2 1185 272 99 37 chr12 90786744 90787178 -53495311 - MLT1D LTR MaLR -25 480 20 21 82 0 0 chr12 90787184 90787233 -53495256 + AT_rich Low_complexity Low_complexity 1 49 0 420 252 96 136 chr12 90787306 90787777 -53494712 + MLT1H1 LTR MaLR 53 549 0 2829 259 38 3 chr12 90788032 90788882 -53493607 + L1MD1 LINE L1 3284 4162 -1984 370 247 17 2 chr12 90788885 90788985 -53493504 + MER2 DNA MER2_type 1 102 -137 266 286 0 0 chr12 90789005 90789061 -53493428 + MER2 DNA MER2_type 290 345 0 908 197 11 0 chr12 90789139 90789327 -53493162 - L1MD1 LINE L1 -159 6083 5894 * 3843 237 55 13 chr12 90789321 90790375 -53492114 + L1MD1 LINE L1 4203 5211 -1031 2419 72 3 0 chr12 90790375 90790680 -53491809 + AluY SINE Alu 2 307 -4 3843 237 55 13 chr12 90790680 90791575 -53490914 + L1MD1 LINE L1 5211 6232 -10 28 0 0 0 chr12 90791831 90791859 -53490630 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr12 90791908 90791934 -53490555 + (TA)n Simple_repeat Simple_repeat 2 27 0 877 249 39 30 chr12 90792300 90792533 -53489956 - L1MD1 LINE L1 -2129 5679 5445 3075 103 24 20 chr12 90793811 90794235 -53488254 + LTR46 LTR ERV1 1 429 -31 234 0 0 0 chr12 90794235 90794261 -53488228 + (TG)n Simple_repeat Simple_repeat 2 27 0 3075 103 24 20 chr12 90794261 90794294 -53488195 + LTR46 LTR ERV1 429 460 0 275 242 0 15 chr12 90796081 90796147 -53486342 + (TG)n Simple_repeat Simple_repeat 1 65 0 318 322 106 28 chr12 90797849 90798029 -53484460 - MIR SINE MIR -64 198 5 221 276 98 63 chr12 90798404 90798578 -53483911 - MIR SINE MIR 0 262 83 326 286 58 39 chr12 90799783 90799937 -53482552 - L2 LINE L2 -227 3086 2930 185 356 0 0 chr12 90799967 90800026 -53482463 - L2 LINE L2 -370 2944 2886 345 252 27 32 chr12 90800055 90800236 -53482253 - L1 LINE L1 -2244 3902 3721 1470 181 0 113 chr12 90800425 90800628 -53481861 - AluJb SINE Alu -3 299 147 2147 92 21 7 chr12 90800628 90800910 -53481579 - AluSg SINE Alu -24 286 1 1470 181 0 113 chr12 90800910 90801042 -53481447 - AluJb SINE Alu -155 147 2 507 311 96 28 chr12 90801048 90801444 -53481045 - L1 LINE L1 -2648 3498 3076 241 125 0 25 chr12 90801573 90801613 -53480876 + MER57A LTR ERV1 295 333 -70 2148 125 3 0 chr12 90801933 90802238 -53480251 - AluSq SINE Alu -7 306 1 26 30 0 0 chr12 90802247 90802280 -53480209 + AT_rich Low_complexity Low_complexity 1 33 0 398 222 0 8 chr12 90802302 90802419 -53480070 + CT-rich Low_complexity Low_complexity 2 117 0 1760 190 27 9 chr12 90803129 90803460 -53479029 - MER44D DNA MER2_type 0 605 397 742 204 0 33 chr12 90803478 90803630 -53478859 - FRAM SINE Alu -29 147 1 1788 184 3 0 chr12 90803631 90803935 -53478554 - MER44D DNA MER2_type -298 407 103 355 264 8 48 chr12 90805125 90805250 -53477239 - MLT2E LTR ERVL -2 626 507 572 224 75 0 chr12 90805503 90805677 -53476812 + MER5A DNA MER1_type 1 187 -2 262 247 32 0 chr12 90805683 90805776 -53476713 - MER5A DNA MER1_type -93 96 1 566 232 73 0 chr12 90806271 90806422 -53476067 - MIR SINE MIR -38 224 63 477 146 12 0 chr12 90807241 90807323 -53475166 - AluSp/q SINE Alu -1 312 230 497 171 154 0 chr12 90807447 90807564 -53474925 + MLT1C-int LTR MaLR 1237 1371 0 724 234 154 34 chr12 90807566 90807982 -53474507 + MLT1C LTR MaLR 3 384 -6 558 308 108 25 chr12 90808029 90808390 -53474099 + L2 LINE L2 2922 3312 -1 1257 229 11 29 chr12 90809193 90809473 -53473016 - MLT1A1 LTR MaLR 0 365 91 263 340 10 82 chr12 90809631 90809825 -53472664 - MLT1I LTR MaLR -122 287 108 2003 204 22 0 chr12 90810223 90810624 -53471865 + MER41D LTR ERV1 1 410 -147 1543 120 4 66 chr12 90810638 90810897 -53471592 - AluSx SINE Alu -46 266 24 335 335 43 6 chr12 90811494 90811658 -53470831 - L1M4 LINE L1 -2925 3221 3052 230 191 0 21 chr12 90811658 90811705 -53470784 + CT-rich Low_complexity Low_complexity 3 48 0 237 266 16 0 chr12 90812459 90812523 -53469966 + L1MC4 LINE L1 6906 6970 -1072 303 140 0 0 chr12 90812526 90812576 -53469913 + (TA)n Simple_repeat Simple_repeat 2 51 0 60 53 0 0 chr12 90812608 90812703 -53469786 + AT_rich Low_complexity Low_complexity 1 95 0 714 249 128 11 chr12 90812711 90813175 -53469314 + L1MC4 LINE L1 6685 7246 -796 303 250 54 9 chr12 90813183 90813295 -53469194 - L1MC4 LINE L1 -2 8040 7924 2206 252 69 45 chr12 90813300 90814038 -53468451 + MER21B LTR ERV1 1 756 -107 1197 264 62 42 chr12 90814255 90814872 -53467617 - L1ME2 LINE L1 -12 6152 5524 1530 219 7 0 chr12 90815787 90816079 -53466410 + AluJb SINE Alu 1 294 -18 261 0 0 0 chr12 90816088 90816117 -53466372 + (TA)n Simple_repeat Simple_repeat 1 29 0 2547 215 23 22 chr12 90816541 90817141 -53465348 + MER7C DNA MER2_type 1 601 -1 768 271 58 5 chr12 90817415 90817622 -53464867 + MIR SINE MIR 15 232 -30 536 110 24 0 chr12 90817623 90817705 -53464784 + HSMAR2 DNA Mariner 3 86 -1216 5768 145 47 8 chr12 90817707 90818675 -53463814 + HSMAR2 DNA Mariner 281 1285 -17 21 0 0 0 chr12 90818813 90818834 -53463655 + AT_rich Low_complexity Low_complexity 1 21 0 232 374 16 8 chr12 90819160 90819283 -53463206 - MIR3 SINE MIR -32 176 53 267 269 0 28 chr12 90819504 90819612 -53462877 + GA-rich Low_complexity Low_complexity 3 107 0 286 0 0 0 chr12 90819618 90819660 -53462829 + L1PA2 LINE L1 6114 6155 0 2829 63 3 0 chr12 90819672 90820036 -53462453 + L1PA7 LINE L1 5790 6154 0 207 0 0 0 chr12 90820080 90820103 -53462386 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2005 121 0 0 chr12 90820103 90820383 -53462106 - AluSx SINE Alu -32 280 1 194 273 15 30 chr12 90820600 90820666 -53461823 - L2 LINE L2 0 3313 3249 2096 122 27 0 chr12 90821097 90821392 -53461097 - AluSx SINE Alu -9 303 1 21 57 0 0 chr12 90821414 90821449 -53461040 + AT_rich Low_complexity Low_complexity 1 35 0 31 44 0 0 chr12 90823140 90823185 -53459304 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr12 90823723 90823744 -53458745 + AT_rich Low_complexity Low_complexity 1 21 0 11746 164 77 98 chr12 90823893 90826685 -53455804 + L1MA2 LINE L1 25 2757 -4808 5932 184 9 0 chr12 90826667 90827821 -53454668 + L1MA2 LINE L1 5076 6240 -1325 * 1421 124 0 5 chr12 90827812 90828030 -53454459 + L1MA2 LINE L1 6987 7203 -520 * 729 124 0 0 chr12 90828031 90828136 -53454353 + AluSg/x SINE Alu 193 297 -12 211 140 40 0 chr12 90828136 90828186 -53454303 + GA-rich Low_complexity Low_complexity 1 52 0 588 73 0 0 chr12 90828194 90828276 -53454213 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 3416 108 8 6 chr12 90828276 90828804 -53453685 + L1MA2 LINE L1 7192 7723 0 1001 304 39 57 chr12 90829064 90829585 -53452904 + L2 LINE L2 2526 3055 -258 262 0 53 0 chr12 90829585 90829623 -53452866 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 1935 120 7 18 chr12 90829632 90829779 -53452710 - AluSx SINE Alu -31 281 137 2241 111 0 0 chr12 90829779 90830077 -53452412 - AluSg SINE Alu -12 298 1 1935 120 7 18 chr12 90830077 90830213 -53452276 - AluSx SINE Alu -175 137 1 1001 304 39 57 chr12 90830213 90830478 -53452011 + L2 LINE L2 3063 3312 -1 23 0 0 0 chr12 90831150 90831173 -53451316 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 90833010 90833032 -53449457 + AT_rich Low_complexity Low_complexity 1 22 0 277 119 0 0 chr12 90833377 90833419 -53449070 - U5 snRNA snRNA -72 44 3 2441 55 0 7 chr12 90834327 90834637 -53447852 + AluY SINE Alu 1 308 -3 21 0 0 0 chr12 90835052 90835073 -53447416 + AT_rich Low_complexity Low_complexity 1 21 0 2416 96 0 0 chr12 90835530 90835842 -53446647 - AluSx SINE Alu 0 312 1 1106 139 0 0 chr12 90835879 90836044 -53446445 - AluSg/x SINE Alu -3 307 143 212 189 0 0 chr12 90836097 90836134 -53446355 + A-rich Low_complexity Low_complexity 1 37 0 5413 144 20 20 chr12 90836309 90837591 -53444898 + L1PA15 LINE L1 4886 6165 0 534 255 0 5 chr12 90837855 90838060 -53444429 + CT-rich Low_complexity Low_complexity 1 204 0 23 86 0 0 chr12 90838725 90838783 -53443706 + AT_rich Low_complexity Low_complexity 1 58 0 23 78 0 0 chr12 90839287 90839338 -53443151 + AT_rich Low_complexity Low_complexity 1 51 0 266 255 216 85 chr12 90839832 90839985 -53442504 + MER5B DNA MER1_type 6 178 0 250 294 44 0 chr12 90840593 90840661 -53441828 + MLT1L LTR MaLR 204 274 -341 376 180 234 0 chr12 90841189 90841317 -53441172 - MER46C DNA MER2_type -179 159 2 461 347 69 36 chr12 90842129 90842605 -53439884 + L2 LINE L2 2262 2753 -561 209 321 16 74 chr12 90843124 90843314 -53439175 + L2 LINE L2 2119 2297 -1017 283 247 48 27 chr12 90843449 90843595 -53438894 - L1MEc LINE L1 -1682 4962 4814 216 0 0 0 chr12 90843612 90843636 -53438853 + (TG)n Simple_repeat Simple_repeat 1 24 0 765 179 0 0 chr12 90843649 90843772 -53438717 - FAM SINE Alu -43 142 20 5890 244 64 61 chr12 90843780 90843927 -53438562 - L1MEc LINE L1 -1819 4825 4680 1824 94 0 0 chr12 90843927 90844160 -53438329 - AluSc SINE Alu -76 233 1 5890 244 64 61 chr12 90844160 90845979 -53436510 - L1MEc LINE L1 -1964 4680 2870 2159 101 34 0 chr12 90845979 90846275 -53436214 + AluSq SINE Alu 1 306 -7 5890 244 64 61 chr12 90846275 90847402 -53435087 - L1MEc LINE L1 -3774 2870 1747 958 222 9 38 chr12 90847405 90847617 -53434872 + AluJo SINE Alu 85 290 -22 4726 249 42 42 chr12 90847620 90849210 -53433279 - L1MEc LINE L1 -4939 1603 14 435 157 134 8 chr12 90850445 90850565 -53431924 + L1ME LINE L1 5569 5698 -466 1378 176 72 93 chr12 90850591 90850970 -53431519 + MLT2D LTR ERVL 5 468 -47 334 66 0 131 chr12 90851005 90851066 -53431423 + MLT2C1 LTR ERVL 349 393 -4 1349 197 0 47 chr12 90851073 90851347 -53431142 + ERVL LTR ERVL 3836 4096 -1668 354 219 7 119 chr12 90851354 90851505 -53430984 - MLT1E LTR MaLR -456 137 4 212 309 12 83 chr12 90851582 90851666 -53430823 + L2 LINE L2 3186 3263 -9 6267 72 0 0 chr12 90852494 90853721 -53428768 - L1PA8 LINE L1 0 6172 4927 266 373 8 32 chr12 90854428 90854554 -53427935 + L2 LINE L2 3150 3272 0 187 128 170 0 chr12 90854782 90854829 -53427660 - MIR SINE MIR -29 233 179 487 307 57 0 chr12 90854883 90855023 -53427466 - MIR SINE MIR -94 168 21 323 341 114 43 chr12 90855225 90855436 -53427053 + MIR SINE MIR 26 251 -11 303 254 0 0 chr12 90857230 90857293 -53425196 + MIR3 SINE MIR 97 159 -49 485 337 21 21 chr12 90857297 90857484 -53425005 - MER5A DNA MER1_type -2 187 1 625 289 118 39 chr12 90859008 90859448 -53423041 - MLT1H LTR MaLR 0 549 75 186 308 143 22 chr12 90860770 90860861 -53421628 + L2 LINE L2 1327 1428 -1886 228 238 250 85 chr12 90861615 90861779 -53420710 + MIR SINE MIR 2 192 -70 3342 220 109 51 chr12 90862106 90863166 -53419323 + LTR28 LTR ERV1 1 636 0 519 219 20 41 chr12 90863222 90863368 -53419121 - L2 LINE L2 -4 3309 3167 263 365 47 24 chr12 90863402 90863572 -53418917 - L2 LINE L2 -3108 206 33 2135 219 83 50 chr12 90863971 90864648 -53417841 + L1ME2 LINE L1 5461 6159 -5 32 98 0 0 chr12 90864910 90865012 -53417477 + AT_rich Low_complexity Low_complexity 1 102 0 30 59 0 0 chr12 90865114 90865165 -53417324 + AT_rich Low_complexity Low_complexity 1 51 0 25 65 0 0 chr12 90866123 90866169 -53416320 + AT_rich Low_complexity Low_complexity 1 46 0 255 257 124 72 chr12 90866248 90866555 -53415934 - L1ME LINE L1 -286 5835 5513 2411 31 41 0 chr12 90866786 90867076 -53415413 - AluY SINE Alu -9 302 1 1970 196 41 10 chr12 90867259 90867672 -53414817 - MSTB LTR MaLR 0 426 1 265 333 52 68 chr12 90867984 90868176 -53414313 + L2 LINE L2 2681 2869 -445 346 256 13 0 chr12 90868439 90868517 -53413972 + L2 LINE L2 3163 3241 -31 1376 207 38 3 chr12 90868902 90869192 -53413297 - AluJo SINE Alu -12 300 1 24 67 0 0 chr12 90870529 90870574 -53411915 + AT_rich Low_complexity Low_complexity 1 45 0 854 201 0 17 chr12 90870973 90871147 -53411342 - AluJb SINE Alu -9 303 133 281 159 0 0 chr12 90871501 90871545 -53410944 - MIR SINE MIR -116 146 103 247 196 23 23 chr12 90871905 90872078 -53410411 + (TA)n Simple_repeat Simple_repeat 1 173 0 381 336 29 29 chr12 90872116 90872256 -53410233 - MIR3 SINE MIR -49 159 20 225 0 0 0 chr12 90873998 90874023 -53408466 + (TA)n Simple_repeat Simple_repeat 1 25 0 282 293 61 50 chr12 90874729 90874828 -53407661 - L2 LINE L2 -4 3309 3210 673 283 107 12 chr12 90875325 90875569 -53406920 + MLT1J LTR MaLR 1 267 -244 306 332 48 42 chr12 90876172 90876385 -53406104 - MIR SINE MIR -11 251 35 1924 143 10 0 chr12 90876728 90877036 -53405453 + AluSx SINE Alu 1 311 -1 424 219 207 35 chr12 90877276 90877445 -53405044 + MIR SINE MIR 8 205 -57 1604 182 16 19 chr12 90878008 90878144 -53404345 + AluJo SINE Alu 1 136 -176 279 0 0 0 chr12 90878144 90878175 -53404314 + (TA)n Simple_repeat Simple_repeat 2 32 0 1604 182 16 19 chr12 90878175 90878346 -53404143 + AluJo SINE Alu 136 307 -5 670 302 104 18 chr12 90878467 90878805 -53403684 - MLT1J LTR MaLR -144 367 1 318 288 12 88 chr12 90880477 90880637 -53401852 + L1MEd LINE L1 955 1102 -5017 436 167 10 10 chr12 90881754 90881856 -53400633 + GA-rich Low_complexity Low_complexity 1 102 0 247 379 32 32 chr12 90881941 90882160 -53400329 + MLT1K LTR MaLR 20 238 -350 3267 154 5 55 chr12 90882367 90883002 -53399487 + LTR26 LTR ERV1 1 603 0 1408 151 19 77 chr12 90883006 90883139 -53399350 + MER49 LTR ERV1 1 140 -783 1955 122 0 46 chr12 90883139 90883466 -53399023 + AluSq SINE Alu 2 313 0 1408 151 19 77 chr12 90883466 90883644 -53398845 + MER49 LTR ERV1 140 294 -629 354 198 5 32 chr12 90883617 90883750 -53398739 + MER4E LTR ERV1 49 284 -588 * 1706 211 6 9 chr12 90883748 90884098 -53398391 + MER4D LTR ERV1 547 895 -8 982 294 53 62 chr12 90885505 90886050 -53396439 + MER21B LTR ERV1 197 736 -127 3214 164 80 45 chr12 90886970 90887667 -53394822 + MER72 LTR ERV1 1 722 0 528 304 57 35 chr12 90888331 90888561 -53393928 - MIR SINE MIR -26 236 2 831 365 11 19 chr12 90888743 90889110 -53393379 + L1PA13 LINE L1 1 364 -6423 482 209 0 35 chr12 90889111 90889226 -53393263 + L1 LINE L1 4200 4310 -1836 680 12 24 0 chr12 90889226 90889310 -53393179 + (TTTC)n Simple_repeat Simple_repeat 1 86 0 2581 104 0 3 chr12 90889315 90889671 -53392818 + THE1A LTR MaLR 1 355 0 575 184 46 0 chr12 90889671 90889780 -53392709 - AluJb SINE Alu -198 114 1 1685 185 0 16 chr12 90889791 90889823 -53392666 - AluSx SINE Alu -3 309 278 189 0 0 0 chr12 90889823 90889844 -53392645 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1685 185 0 16 chr12 90889844 90890125 -53392364 - AluSx SINE Alu -34 278 1 2948 227 8 11 chr12 90890126 90890857 -53391632 + L1 LINE L1 4321 5049 -1097 1672 129 78 70 chr12 90890857 90891229 -53391260 + THE1C LTR MaLR 1 375 0 9366 125 26 52 chr12 90891229 90892851 -53389638 + THE1C-int LTR MaLR 1 1580 0 1685 149 98 21 chr12 90892866 90893202 -53389287 + THE1C LTR MaLR 14 375 0 5229 162 22 7 chr12 90893202 90894289 -53388200 + L1PA16 LINE L1 5045 6145 -21 2404 222 34 35 chr12 90894488 90895051 -53387438 - MER68 LTR ERV1 0 562 1 239 241 0 63 chr12 90895110 90895189 -53387300 - Zaphod DNA AcHobo -3891 140 67 1435 225 38 48 chr12 90895281 90895397 -53387092 - MSTD LTR MaLR 0 396 280 2294 99 7 0 chr12 90895397 90895700 -53386789 + AluSp SINE Alu 1 305 -8 1435 225 38 48 chr12 90895700 90895983 -53386506 - MSTD LTR MaLR -116 280 1 1327 273 132 59 chr12 90898623 90899472 -53383017 + L2 LINE L2 2379 3311 -2 193 312 21 43 chr12 90899688 90899781 -53382708 + L2 LINE L2 3182 3272 0 22 56 0 0 chr12 90900901 90900937 -53381552 + AT_rich Low_complexity Low_complexity 1 36 0 347 275 18 73 chr12 90901934 90902043 -53380446 + L2 LINE L2 3169 3271 -1 408 40 0 0 chr12 90902150 90902200 -53380289 + (CA)n Simple_repeat Simple_repeat 2 51 0 221 247 0 12 chr12 90902201 90902282 -53380207 + (TA)n Simple_repeat Simple_repeat 1 80 0 2786 161 61 8 chr12 90902878 90903400 -53379089 - MER44D DNA MER2_type 0 605 1 21 0 0 0 chr12 90903970 90903991 -53378498 + AT_rich Low_complexity Low_complexity 1 21 0 912 256 70 4 chr12 90905313 90905540 -53376949 + MIR SINE MIR 5 246 -16 273 362 48 0 chr12 90905799 90905904 -53376585 - MIR SINE MIR -110 152 43 695 234 130 19 chr12 90906772 90907080 -53375409 + LTR37A LTR ERV1 81 422 -4 566 200 80 16 chr12 90907088 90907213 -53375276 + MER39 LTR ERV1 1 133 -574 * 1385 205 155 27 chr12 90907191 90907579 -53374910 + MER39 LTR ERV1 261 558 -7 22 0 0 0 chr12 90907691 90907713 -53374776 + AT_rich Low_complexity Low_complexity 1 22 0 199 301 32 32 chr12 90907719 90907812 -53374677 - MIR SINE MIR -69 193 101 482 263 88 31 chr12 90908392 90908586 -53373903 + MIR SINE MIR 31 235 -27 285 75 0 0 chr12 90908821 90908861 -53373628 + (CA)n Simple_repeat Simple_repeat 1 40 0 223 135 77 39 chr12 90909145 90909197 -53373292 - MIR SINE MIR -87 175 122 28 61 0 0 chr12 90910498 90910547 -53371942 + AT_rich Low_complexity Low_complexity 1 49 0 2132 108 7 3 chr12 90911110 90911407 -53371082 + AluSx SINE Alu 1 298 -14 2042 114 0 13 chr12 90911755 90912054 -53370435 - AluSx SINE Alu -16 296 2 1957 103 14 7 chr12 90912158 90912439 -53370050 - AluSq SINE Alu -30 283 1 989 158 35 30 chr12 90913872 90914075 -53368414 + L1PA16 LINE L1 5963 6166 0 611 271 54 20 chr12 90915270 90915473 -53367016 - MER63A DNA MER1_type 0 210 1 593 268 14 7 chr12 90915710 90915852 -53366637 + L2 LINE L2 3171 3313 0 1590 111 41 11 chr12 90915919 90916190 -53366299 - L1MA5A LINE L1 0 6297 6019 23 0 0 0 chr12 90916931 90916954 -53365535 + AT_rich Low_complexity Low_complexity 1 23 0 303 288 171 14 chr12 90917114 90917260 -53365229 + L2 LINE L2 3104 3272 0 226 251 198 59 chr12 90918283 90918470 -53364019 - MLT1J LTR MaLR -174 337 125 242 285 24 73 chr12 90919730 90919853 -53362636 - L2 LINE L2 -224 3048 2932 392 289 0 10 chr12 90920255 90920359 -53362130 - MIR SINE MIR -111 151 49 538 238 8 0 chr12 90920381 90920503 -53361986 + MIR SINE MIR 105 227 -35 860 222 0 0 chr12 90921726 90921888 -53360601 + FRAM SINE Alu 3 164 -2 30 59 0 0 chr12 90922266 90922317 -53360172 + AT_rich Low_complexity Low_complexity 1 51 0 216 158 0 0 chr12 90922519 90922557 -53359932 + T-rich Low_complexity Low_complexity 1 38 0 182 108 54 0 chr12 90923334 90923371 -53359118 + CT-rich Low_complexity Low_complexity 3 41 0 1179 168 60 35 chr12 90923549 90923865 -53358624 + MER33 DNA MER1_type 1 324 0 237 182 0 0 chr12 90924095 90924150 -53358339 + T-rich Low_complexity Low_complexity 1 55 0 223 263 0 40 chr12 90924211 90924287 -53358202 + GA-rich Low_complexity Low_complexity 2 74 0 275 157 6 229 chr12 90924358 90924524 -53357965 + MER112 DNA MER1_type 6 134 -126 21 36 0 0 chr12 90924664 90924692 -53357797 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr12 90925024 90925068 -53357421 + AT_rich Low_complexity Low_complexity 1 44 0 331 355 59 15 chr12 90925312 90925515 -53356974 - L1 LINE L1 -1140 5006 4795 1022 292 163 12 chr12 90927849 90928597 -53353892 - L2 LINE L2 0 3313 2413 192 77 0 0 chr12 90928847 90928873 -53353616 + (CTAAT)n Simple_repeat Simple_repeat 5 30 0 312 174 76 28 chr12 90928950 90929148 -53353341 + (TTTAA)n Simple_repeat Simple_repeat 1 207 0 33 80 0 0 chr12 90929187 90929262 -53353227 + AT_rich Low_complexity Low_complexity 1 75 0 768 279 133 58 chr12 90929750 90930256 -53352233 - MLT1F LTR MaLR 0 555 18 21 0 0 0 chr12 90930843 90930864 -53351625 + AT_rich Low_complexity Low_complexity 1 21 0 39 0 0 0 chr12 90930910 90930949 -53351540 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr12 90931518 90931544 -53350945 + AT_rich Low_complexity Low_complexity 1 26 0 4657 44 0 0 chr12 90933207 90933774 -53348715 + L1PA5 LINE L1 5585 6151 -3 2447 71 0 0 chr12 90934890 90935200 -53347289 + AluY SINE Alu 1 310 -1 328 103 0 35 chr12 90936608 90936666 -53345823 - MSTB LTR MaLR -3 425 370 * 1032 166 16 5 chr12 90936665 90936852 -53345637 - MSTB LTR MaLR -225 201 13 204 361 142 32 chr12 90937035 90937445 -53345044 + L2 LINE L2 2327 2781 -533 2079 170 54 27 chr12 90937589 90937995 -53344494 + MSTB1 LTR MaLR 1 417 -15 21 0 0 0 chr12 90938207 90938228 -53344261 + AT_rich Low_complexity Low_complexity 1 21 0 348 294 64 31 chr12 90939592 90940091 -53342398 + L1MDb LINE L1 1146 1697 -4890 1681 77 0 0 chr12 90940316 90940536 -53341953 - AluY SINE Alu -7 304 85 335 303 28 41 chr12 90940727 90940872 -53341617 - L2 LINE L2 0 3313 3171 314 279 147 29 chr12 90940996 90941200 -53341289 - HAL1 LINE L1 -1082 1425 1198 28 71 0 0 chr12 90941366 90941422 -53341067 + AT_rich Low_complexity Low_complexity 1 56 0 392 301 6 30 chr12 90942346 90942512 -53339977 + A-rich Low_complexity Low_complexity 4 165 0 231 277 59 10 chr12 90945380 90945481 -53337008 - MER5A DNA MER1_type -83 106 1 1444 223 3 15 chr12 90945947 90946263 -53336226 - MER47B DNA MER2_type -1 417 1 764 57 14 121 chr12 90946338 90946479 -53336010 + L1PA7 LINE L1 6027 6152 -2 361 323 102 0 chr12 90946613 90946780 -53335709 + MIR SINE MIR 41 224 -38 36 40 0 0 chr12 90946962 90947012 -53335477 + AT_rich Low_complexity Low_complexity 1 50 0 216 341 12 12 chr12 90947751 90947833 -53334656 - L2 LINE L2 0 3272 3191 23 0 0 0 chr12 90948427 90948450 -53334039 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr12 90948742 90948772 -53333717 + AT_rich Low_complexity Low_complexity 1 30 0 1377 182 12 0 chr12 90948810 90949063 -53333426 - L1PA16 LINE L1 -8 6158 5903 1887 170 35 6 chr12 90949660 90950007 -53332482 + THE1B LTR MaLR 1 357 -7 486 291 163 3 chr12 90950019 90950325 -53332164 + L1MC4a LINE L1 5569 5923 -1885 223 270 45 0 chr12 90950336 90950425 -53332064 + (TA)n Simple_repeat Simple_repeat 1 93 0 181 0 33 33 chr12 90951027 90951057 -53331432 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 257 288 48 8 chr12 90951184 90951309 -53331180 + L1MC4a LINE L1 7041 7170 -638 308 26 0 0 chr12 90951525 90951563 -53330926 - L1PA5 LINE L1 -1114 5032 4995 7030 48 3 3 chr12 90951563 90952688 -53329801 + L1PA5 LINE L1 5038 6162 0 305 296 32 16 chr12 90952800 90952925 -53329564 + MIR3 SINE MIR 12 138 -70 2189 143 66 8 chr12 90953011 90953390 -53329099 - MSTA LTR MaLR -27 401 1 4651 153 11 10 chr12 90953390 90954162 -53328327 + L1PA16 LINE L1 5357 6132 -34 1178 141 249 51 chr12 90954162 90954475 -53328014 + THE1C LTR MaLR 1 375 0 4651 153 11 10 chr12 90954475 90954494 -53327995 + L1PA16 LINE L1 6132 6149 -17 2240 114 0 0 chr12 90954681 90954980 -53327509 - AluSx SINE Alu -13 299 1 21 0 0 0 chr12 90955076 90955097 -53327392 + AT_rich Low_complexity Low_complexity 1 21 0 2344 88 0 0 chr12 90955886 90956181 -53326308 + AluSc SINE Alu 1 295 -14 268 311 66 13 chr12 90956575 90956726 -53325763 + L1ME LINE L1 738 896 -5520 257 259 116 34 chr12 90956982 90957316 -53325173 + L1MEd LINE L1 1235 1474 -4850 213 39 0 0 chr12 90957380 90957406 -53325083 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1916 140 16 7 chr12 90957601 90957909 -53324580 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr12 90957942 90957970 -53324519 + AT_rich Low_complexity Low_complexity 1 28 0 583 312 37 53 chr12 90958659 90959113 -53323376 + L1ME LINE L1 908 1366 -5050 21 36 0 0 chr12 90959121 90959149 -53323340 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr12 90959203 90959245 -53323244 + AT_rich Low_complexity Low_complexity 1 42 0 238 221 29 29 chr12 90959284 90959352 -53323137 + L1ME LINE L1 1486 1553 -4863 275 288 136 0 chr12 90959565 90959697 -53322792 + L1ME LINE L1 1854 2003 -4604 397 277 57 73 chr12 90959749 90960096 -53322393 + L1ME LINE L1 2270 2612 -3995 1726 107 97 28 chr12 90960096 90960385 -53322104 + AluSg SINE Alu 1 309 -1 397 277 57 73 chr12 90960385 90960405 -53322084 + L1ME LINE L1 2612 2631 -3976 542 279 61 5 chr12 90960409 90960606 -53321883 + Charlie1b DNA MER1_type 2 209 -314 3385 109 9 4 chr12 90960988 90961514 -53320975 - L1MA2 LINE L1 0 6304 5773 588 73 0 0 chr12 90961514 90961596 -53320893 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 211 140 40 0 chr12 90961604 90961654 -53320835 + CT-rich Low_complexity Low_complexity 1 52 0 2266 79 0 10 chr12 90961654 90961957 -53320532 - AluSx SINE Alu -12 300 1 342 266 325 0 chr12 90962061 90962230 -53320259 - MIR SINE MIR -22 240 17 510 298 151 31 chr12 90963347 90963823 -53318666 - L1MC4 LINE L1 -1 8041 7509 216 67 0 0 chr12 90963868 90963898 -53318591 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 7423 37 6 0 chr12 90963899 90965012 -53317477 - L1PA4 LINE L1 -3 6152 5038 308 26 0 0 chr12 90965012 90965050 -53317439 + L1PA4 LINE L1 4995 5032 -1114 257 288 48 8 chr12 90965266 90965391 -53317098 - L1MC4a LINE L1 -638 7170 7041 181 0 33 33 chr12 90965518 90965548 -53316941 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 304 336 143 31 chr12 90965784 90966135 -53316354 - L1MC4a LINE L1 -1372 6436 6047 223 270 45 0 chr12 90966150 90966239 -53316250 + (TA)n Simple_repeat Simple_repeat 2 94 0 486 291 163 3 chr12 90966250 90966556 -53315933 - L1MC4a LINE L1 -1885 5923 5569 2103 151 35 0 chr12 90966568 90966913 -53315576 - THE1B LTR MaLR -7 357 1 288 323 12 12 chr12 90967208 90967372 -53315117 - L1MC4a LINE L1 -3328 2818 2655 369 306 131 29 chr12 90967473 90967855 -53314634 - L1MC4a LINE L1 -3616 2530 2110 25 51 0 0 chr12 90968340 90968379 -53314110 + AT_rich Low_complexity Low_complexity 1 39 0 1865 113 32 29 chr12 90969262 90969608 -53312881 - L1MA1 LINE L1 0 6302 5956 287 258 0 0 chr12 90970047 90970113 -53312376 - MIR SINE MIR -47 215 150 1344 152 93 62 chr12 90970122 90970263 -53312226 + AluJo SINE Alu 1 136 -176 1959 151 70 41 chr12 90970263 90970679 -53311810 - MSTA LTR MaLR 0 428 1 1344 152 93 62 chr12 90970679 90970827 -53311662 + AluJo SINE Alu 136 299 -13 528 291 8 0 chr12 90970839 90970956 -53311533 - MIR SINE MIR -127 135 18 239 234 32 117 chr12 90971074 90971168 -53311321 - L2 LINE L2 -3 3310 3225 32 26 0 0 chr12 90971272 90971311 -53311178 + AT_rich Low_complexity Low_complexity 1 39 0 372 302 164 31 chr12 90971809 90971968 -53310521 - MIR3 SINE MIR -17 191 12 228 189 0 0 chr12 90972618 90972655 -53309834 + Alu SINE Alu 1 37 -265 1575 176 0 53 chr12 90972657 90972959 -53309530 + AluJb SINE Alu 11 296 -16 370 267 127 40 chr12 90973268 90973418 -53309071 - MIR SINE MIR -74 188 26 408 248 20 20 chr12 90973520 90973673 -53308816 - L1M4 LINE L1 -3653 2493 2341 1409 197 64 108 chr12 90973689 90974218 -53308271 - Charlie1b DNA MER1_type -16 507 2 614 135 0 0 chr12 90974249 90974338 -53308151 + MSTB1 LTR MaLR 329 417 -15 21 0 0 0 chr12 90974550 90974571 -53307918 + AT_rich Low_complexity Low_complexity 1 21 0 348 294 64 31 chr12 90975935 90976434 -53306055 + L1MDb LINE L1 1146 1697 -4890 1681 77 0 0 chr12 90976659 90976879 -53305610 - AluY SINE Alu -7 304 85 335 303 28 41 chr12 90977070 90977215 -53305274 - L2 LINE L2 0 3313 3171 314 279 147 29 chr12 90977339 90977543 -53304946 - HAL1 LINE L1 -1082 1425 1198 28 71 0 0 chr12 90977709 90977765 -53304724 + AT_rich Low_complexity Low_complexity 1 56 0 392 301 6 30 chr12 90978689 90978855 -53303634 + A-rich Low_complexity Low_complexity 4 165 0 231 277 59 10 chr12 90981723 90981824 -53300665 - MER5A DNA MER1_type -83 106 1 1444 223 3 15 chr12 90982290 90982606 -53299883 - MER47B DNA MER2_type -1 417 1 764 57 14 121 chr12 90982681 90982822 -53299667 + L1PA7 LINE L1 6027 6152 -2 348 327 85 0 chr12 90982957 90983122 -53299367 + MIR SINE MIR 46 224 -38 36 40 0 0 chr12 90983304 90983354 -53299135 + AT_rich Low_complexity Low_complexity 1 50 0 230 349 0 12 chr12 90984093 90984176 -53298313 - L2 LINE L2 0 3272 3191 23 0 0 0 chr12 90984771 90984794 -53297695 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr12 90985087 90985117 -53297372 + AT_rich Low_complexity Low_complexity 1 30 0 5141 178 12 5 chr12 90985155 90986229 -53296260 - L1PA16 LINE L1 -8 6158 5080 292 206 0 0 chr12 90986257 90986325 -53296164 + L1P LINE L1 4978 5045 -1101 6398 138 25 11 chr12 90986348 90987907 -53294582 - L1MA3 LINE L1 0 6305 4729 28 0 0 0 chr12 90988389 90988417 -53294072 + AT_rich Low_complexity Low_complexity 1 28 0 504 306 48 24 chr12 90988594 90988842 -53293647 - MLT1H1 LTR MaLR 0 555 302 463 183 75 143 chr12 90989092 90989414 -53293075 - MLT-int LTR MaLR -1 1734 1435 24 53 0 0 chr12 90989415 90989453 -53293036 + AT_rich Low_complexity Low_complexity 1 38 0 41 21 0 0 chr12 90989476 90989524 -53292965 + AT_rich Low_complexity Low_complexity 1 48 0 31 68 0 0 chr12 90989952 90990011 -53292478 + AT_rich Low_complexity Low_complexity 1 59 0 628 206 30 0 chr12 90990495 90990626 -53291863 - FLAM_A SINE Alu 0 142 8 417 309 118 38 chr12 90991418 90991816 -53290673 - L1MC4 LINE L1 -104 7938 7509 216 67 0 0 chr12 90991860 90991890 -53290599 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1817 51 0 4 chr12 90991891 90992125 -53290364 - L1PA4 LINE L1 -3 6152 5920 25 51 0 0 chr12 90993758 90993797 -53288692 + AT_rich Low_complexity Low_complexity 1 39 0 1890 110 32 29 chr12 90994681 90995027 -53287462 - L1MA1 LINE L1 0 6302 5956 287 258 0 0 chr12 90995466 90995532 -53286957 - MIR SINE MIR -47 215 150 1379 152 93 59 chr12 90995541 90995681 -53286808 + AluJo SINE Alu 1 135 -177 1987 153 67 41 chr12 90995681 90996098 -53286391 - MSTA LTR MaLR 0 428 1 1379 152 93 59 chr12 90996098 90996246 -53286243 + AluJo SINE Alu 135 299 -13 528 291 8 0 chr12 90996258 90996375 -53286114 - MIR SINE MIR -127 135 18 239 234 32 117 chr12 90996493 90996587 -53285902 - L2 LINE L2 -3 3310 3225 32 26 0 0 chr12 90996691 90996730 -53285759 + AT_rich Low_complexity Low_complexity 1 39 0 372 302 164 31 chr12 90997227 90997386 -53285103 - MIR3 SINE MIR -17 191 12 228 189 0 0 chr12 90998036 90998073 -53284416 + Alu SINE Alu 1 37 -263 1567 176 0 53 chr12 90998075 90998376 -53284113 + AluJb SINE Alu 11 295 -17 370 267 127 40 chr12 90998685 90998835 -53283654 - MIR SINE MIR -74 188 26 395 255 20 20 chr12 90998937 90999090 -53283399 - L1ME LINE L1 -3653 2773 2621 1849 217 66 19 chr12 90999106 90999589 -53282900 - Charlie1b DNA MER1_type -16 507 2 406 270 51 83 chr12 90999593 90999619 -53282870 - L1ME LINE L1 -3976 2631 2606 1838 88 98 28 chr12 90999619 90999904 -53282585 - AluSg SINE Alu -5 305 1 406 270 51 83 chr12 90999904 91000251 -53282238 - L1ME LINE L1 -4001 2606 2270 275 288 136 0 chr12 91000303 91000435 -53282054 - L1ME LINE L1 -4604 2003 1854 238 221 29 29 chr12 91000648 91000716 -53281773 - L1ME LINE L1 -4863 1553 1486 21 71 0 0 chr12 91000755 91000797 -53281692 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr12 91000851 91000879 -53281610 + AT_rich Low_complexity Low_complexity 1 28 0 583 312 37 53 chr12 91000887 91001341 -53281148 - L1ME LINE L1 -5050 1366 908 306 316 92 13 chr12 91001781 91001933 -53280556 - L1ME LINE L1 -4205 2402 2239 21 36 0 0 chr12 91002029 91002057 -53280432 + AT_rich Low_complexity Low_complexity 1 28 0 1923 139 16 7 chr12 91002090 91002399 -53280090 - AluSx SINE Alu 0 312 1 213 39 0 0 chr12 91002594 91002620 -53279869 + (TTA)n Simple_repeat Simple_repeat 1 26 0 260 279 119 27 chr12 91002684 91003019 -53279470 - L1ME LINE L1 -4863 1553 1235 268 311 66 13 chr12 91003275 91003426 -53279063 - L1ME LINE L1 -5520 896 738 2373 82 0 0 chr12 91003820 91004114 -53278375 - AluSc SINE Alu -15 294 1 21 0 0 0 chr12 91004903 91004924 -53277565 + AT_rich Low_complexity Low_complexity 1 21 0 2274 110 0 0 chr12 91005020 91005319 -53277170 + AluSx SINE Alu 1 299 -13 4633 154 11 10 chr12 91005506 91005525 -53276964 - L1PA16 LINE L1 -17 6149 6132 1178 141 249 51 chr12 91005525 91005838 -53276651 - THE1C LTR MaLR 0 375 1 4633 154 11 10 chr12 91005838 91006610 -53275879 - L1PA16 LINE L1 -34 6132 5357 2189 143 66 8 chr12 91006610 91006989 -53275500 + MSTA LTR MaLR 1 401 -27 305 296 32 16 chr12 91007075 91007200 -53275289 - MIR3 SINE MIR -70 138 12 315 0 0 0 chr12 91007312 91007347 -53275142 + (TTA)n Simple_repeat Simple_repeat 3 37 0 12007 50 5 1 chr12 91007347 91009621 -53272868 - L1PA5 LINE L1 -18 6136 3857 239 186 0 0 chr12 91009627 91009670 -53272819 + MSTA LTR MaLR 386 428 0 7991 193 42 3 chr12 91009670 91011259 -53271230 + MSTA-int LTR MaLR 1 1650 -1 2096 193 57 2 chr12 91011270 91011674 -53270815 + MSTA LTR MaLR 3 428 0 11251 236 16 29 chr12 91011674 91012224 -53270265 - L1PA16 LINE L1 -785 5361 4805 16848 133 39 3 chr12 91012224 91014835 -53267654 + Charlie3 DNA MER1_type 1 2706 -4 11251 236 16 29 chr12 91014835 91017523 -53264966 - L1PA16 LINE L1 -1341 4805 2165 1046 170 105 22 chr12 91017523 91017752 -53264737 - MSTA LTR MaLR 0 428 181 1860 57 20 0 chr12 91017752 91017996 -53264493 - L1PA5 LINE L1 -105 6049 5801 24 77 0 0 chr12 91019065 91019117 -53263372 + AT_rich Low_complexity Low_complexity 1 52 0 35 54 0 0 chr12 91019491 91019547 -53262942 + AT_rich Low_complexity Low_complexity 1 56 0 24 32 0 0 chr12 91021256 91021287 -53261202 + AT_rich Low_complexity Low_complexity 1 31 0 201 338 76 35 chr12 91021333 91021478 -53261011 + MIR SINE MIR 34 184 -78 33 43 0 0 chr12 91022482 91022529 -53259960 + AT_rich Low_complexity Low_complexity 1 47 0 227 214 0 36 chr12 91022639 91022695 -53259794 + CT-rich Low_complexity Low_complexity 3 56 0 252 0 0 0 chr12 91023343 91023371 -53259118 + (TA)n Simple_repeat Simple_repeat 2 29 0 30 69 0 0 chr12 91023637 91023695 -53258794 + AT_rich Low_complexity Low_complexity 1 58 0 31 88 0 0 chr12 91024227 91024307 -53258182 + AT_rich Low_complexity Low_complexity 1 80 0 23 0 0 0 chr12 91024472 91024495 -53257994 + AT_rich Low_complexity Low_complexity 1 23 0 1390 242 104 15 chr12 91024831 91025524 -53256965 - L1ME2 LINE L1 -137 6096 5327 785 245 121 15 chr12 91025540 91025871 -53256618 - L1ME2 LINE L1 -927 5288 4923 334 271 4 93 chr12 91025880 91026105 -53256384 - L1ME2 LINE L1 -5497 899 695 2326 109 3 0 chr12 91026167 91026479 -53256010 - AluSp SINE Alu 0 313 1 342 266 325 0 chr12 91026583 91026752 -53255737 - MIR SINE MIR -22 240 17 228 293 17 0 chr12 91027684 91027742 -53254747 - L1ME1 LINE L1 -116 6050 5992 * 1762 291 59 26 chr12 91027730 91028713 -53253776 - L1MEc LINE L1 -4808 1588 574 645 111 0 0 chr12 91028720 91028810 -53253679 - AluJ/FLAM SINE Alu -220 92 3 196 380 0 0 chr12 91028953 91029003 -53253486 + L3 LINE CR1 46 95 -1482 862 199 21 16 chr12 91029967 91030153 -53252336 + MER5A DNA MER1_type 1 187 -2 481 281 73 62 chr12 91030170 91030216 -53252273 + MIR SINE MIR 58 102 -160 615 252 0 0 chr12 91030216 91030343 -53252146 - FLAM_A SINE Alu -6 127 1 481 281 73 62 chr12 91030343 91030474 -53252015 + MIR SINE MIR 102 237 -25 671 265 100 30 chr12 91030699 91030929 -53251560 - MIR SINE MIR 0 262 17 234 304 62 45 chr12 91031245 91031357 -53251132 - MIR SINE MIR -17 245 132 333 279 105 105 chr12 91031408 91031781 -53250708 - MLT1J2 LTR MaLR -10 440 68 197 333 36 0 chr12 91031916 91032000 -53250489 + MIR SINE MIR 176 262 0 216 0 0 0 chr12 91032329 91032353 -53250136 + (CA)n Simple_repeat Simple_repeat 2 25 0 26 74 0 0 chr12 91032706 91032760 -53249729 + AT_rich Low_complexity Low_complexity 1 54 0 350 331 25 0 chr12 91033831 91033952 -53248537 + L2 LINE L2 3190 3313 0 432 0 0 0 chr12 91034291 91034339 -53248150 + (TG)n Simple_repeat Simple_repeat 1 48 0 30 59 0 0 chr12 91036201 91036252 -53246237 + AT_rich Low_complexity Low_complexity 1 51 0 2294 50 0 10 chr12 91036514 91036833 -53245656 - AluY SINE Alu 0 311 1 190 341 66 50 chr12 91036834 91036940 -53245549 - MER5A DNA MER1_type -4 185 73 3385 71 19 15 chr12 91036940 91037418 -53245071 - L1PA14 LINE L1 0 6161 5682 190 341 66 50 chr12 91037418 91037493 -53244996 - MER5A DNA MER1_type -116 73 1 482 160 34 50 chr12 91038996 91039115 -53243374 + ORSL DNA AcHobo 1 117 -158 5783 195 23 24 chr12 91039236 91041122 -53241367 - L1MC1 LINE L1 0 6333 4456 304 39 20 20 chr12 91041316 91041367 -53241122 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1037 112 0 0 chr12 91041370 91041513 -53240976 - AluSc SINE Alu -24 285 143 2514 52 0 3 chr12 91045286 91045596 -53236893 + AluY SINE Alu 1 309 -2 210 143 0 0 chr12 91046878 91046913 -53235576 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 204 286 0 0 chr12 91047107 91047156 -53235333 + (ATG)n Simple_repeat Simple_repeat 3 51 0 388 268 57 49 chr12 91047772 91048037 -53234452 + L2 LINE L2 1495 1761 -1553 327 230 18 87 chr12 91048483 91048598 -53233891 - MLT1I LTR MaLR -23 424 291 1835 160 3 0 chr12 91048708 91048995 -53233494 + AluJo SINE Alu 1 288 -24 231 149 0 43 chr12 91049029 91049076 -53233413 - MLT1I LTR MaLR -266 143 99 1081 260 17 14 chr12 91049213 91049501 -53232988 - MLT1E3 LTR MaLR -43 581 293 450 278 56 50 chr12 91049577 91049757 -53232732 - L2 LINE L2 0 3313 3133 757 295 212 9 chr12 91049819 91050447 -53232042 - L2 LINE L2 -106 3207 2422 184 303 101 90 chr12 91050739 91050927 -53231562 - L3 LINE CR1 -28 1549 1360 521 230 68 77 chr12 91051187 91051317 -53231172 + MLT1J2 LTR MaLR 1 130 -320 1688 137 27 30 chr12 91051317 91051616 -53230873 + AluSx SINE Alu 1 298 -14 521 230 68 77 chr12 91051616 91051720 -53230769 + MLT1J2 LTR MaLR 130 233 -217 1655 179 21 0 chr12 91052873 91053192 -53229297 + AluJb SINE Alu 1 325 0 503 277 115 42 chr12 91054653 91054913 -53227576 + L2 LINE L2 3021 3299 -14 2449 241 103 40 chr12 91055165 91056479 -53226010 - L1MC5 LINE L1 -65 7896 6494 1740 213 50 4 chr12 91056596 91057060 -53225429 - MER89 LTR ERV1 -1 558 11 372 306 111 62 chr12 91057274 91057643 -53224846 - L1MC4a LINE L1 -1602 6206 5820 26 74 0 0 chr12 91057741 91057795 -53224694 + AT_rich Low_complexity Low_complexity 1 54 0 1560 208 59 3 chr12 91058592 91058948 -53223541 - L1MC4 LINE L1 -253 7789 7414 649 338 39 0 chr12 91059384 91059591 -53222898 + HERV16 LTR ERVL 2811 3025 -1971 1415 287 62 32 chr12 91060769 91061556 -53220933 - L1MEc LINE L1 -1783 4757 3947 805 266 60 47 chr12 91061554 91062277 -53220212 - L1MEc LINE L1 -3408 3132 2437 * 351 260 166 77 chr12 91062334 91062773 -53219716 - L1MEc LINE L1 -4637 2084 1607 4935 164 27 22 chr12 91062774 91063947 -53218542 - L1MA8 LINE L1 -51 6240 5062 251 198 23 0 chr12 91064042 91064128 -53218361 - L1MEc LINE L1 -5189 1351 1264 1959 123 7 10 chr12 91064299 91064607 -53217882 - L1PA15 LINE L1 -7 6158 5852 475 367 82 24 chr12 91064660 91065224 -53217265 - L2 LINE L2 -52 3261 2669 196 28 83 0 chr12 91065312 91065348 -53217141 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1075 256 183 14 chr12 91065858 91066300 -53216189 - LTR40a LTR ERVL 0 519 3 503 254 120 7 chr12 91066302 91066444 -53216045 - HERVL40 LTR ERVL 0 5530 5373 321 185 0 31 chr12 91066551 91066616 -53215873 - HERVL40 LTR ERVL -239 2798 2736 598 327 56 28 chr12 91066833 91067157 -53215332 - HERVL40 LTR ERVL -768 4762 4430 250 310 20 10 chr12 91067372 91067472 -53215017 - HERVL40 LTR ERVL -1168 1869 1769 * 430 242 117 0 chr12 91067453 91067573 -53214916 - HERVL40 LTR ERVL -1646 3884 3751 257 327 44 18 chr12 91067610 91067723 -53214766 - HERVL40 LTR ERVL -1860 3670 3555 * 610 259 54 64 chr12 91067702 91067941 -53214548 - HERVL40 LTR ERVL -1414 3427 1453 1541 275 35 22 chr12 91067956 91068410 -53214079 - HERVL40 LTR ERVL -2470 3060 2601 6186 95 0 0 chr12 91068561 91069894 -53212595 - L1PA8A LINE L1 -5 6126 4795 1501 134 0 4 chr12 91071214 91071468 -53211021 - L1MA8 LINE L1 -5 6286 6034 203 200 0 18 chr12 91071490 91071545 -53210944 + (TA)n Simple_repeat Simple_repeat 2 55 0 35 41 0 0 chr12 91073253 91073302 -53209187 + AT_rich Low_complexity Low_complexity 1 49 0 26 30 0 0 chr12 91074536 91074569 -53207920 + AT_rich Low_complexity Low_complexity 1 33 0 32 67 0 0 chr12 91075316 91075376 -53207113 + AT_rich Low_complexity Low_complexity 1 60 0 186 228 53 35 chr12 91076845 91076902 -53205587 + MIR SINE MIR 84 141 -121 21 0 0 0 chr12 91077432 91077453 -53205036 + AT_rich Low_complexity Low_complexity 1 21 0 183 359 0 0 chr12 91078572 91078625 -53203864 + L2 LINE L2 3215 3267 -5 24 32 0 0 chr12 91078950 91078981 -53203508 + AT_rich Low_complexity Low_complexity 1 31 0 180 77 0 0 chr12 91079269 91079295 -53203194 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 197 346 39 13 chr12 91079515 91079593 -53202896 - MIR SINE MIR -35 227 148 242 328 95 48 chr12 91079795 91079984 -53202505 - MIR SINE MIR -18 244 47 25 83 0 0 chr12 91081143 91081203 -53201286 + AT_rich Low_complexity Low_complexity 1 60 0 28 0 0 0 chr12 91081317 91081345 -53201144 + AT_rich Low_complexity Low_complexity 1 28 0 36 97 0 0 chr12 91081731 91081844 -53200645 + AT_rich Low_complexity Low_complexity 1 113 0 2460 48 3 0 chr12 91082142 91082432 -53200057 + AluY SINE Alu 3 293 -18 21 0 0 0 chr12 91082538 91082559 -53199930 + AT_rich Low_complexity Low_complexity 1 21 0 359 215 65 9 chr12 91083561 91083668 -53198821 - L1MB7 LINE L1 -21 6163 6051 21 0 0 0 chr12 91083926 91083947 -53198542 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr12 91084127 91084159 -53198330 + AT_rich Low_complexity Low_complexity 1 32 0 185 35 69 0 chr12 91084412 91084441 -53198048 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 676 307 27 23 chr12 91084643 91084900 -53197589 + MIR SINE MIR 3 260 -2 450 296 54 32 chr12 91084958 91085144 -53197345 - MIR SINE MIR -14 248 59 3369 124 31 23 chr12 91085523 91085847 -53196642 - L1PA16 LINE L1 -9 6157 5824 2128 100 23 10 chr12 91085847 91086148 -53196341 - AluSx SINE Alu -7 305 1 3369 124 31 23 chr12 91086148 91086394 -53196095 - L1PA16 LINE L1 -342 5824 5582 299 299 15 0 chr12 91087300 91087367 -53195122 + L2 LINE L2 3203 3270 -2 2120 169 35 29 chr12 91087622 91088166 -53194323 - MLT2A1 LTR ERVL -2 552 1 5930 106 13 9 chr12 91088166 91089335 -53193154 - HERVL-A1 LTR ERVL 0 5654 2755 284 270 0 14 chr12 91089452 91089526 -53192963 - MIR SINE MIR -32 230 158 471 353 98 25 chr12 91089893 91090292 -53192197 + L2 LINE L2 2886 3313 0 184 150 0 25 chr12 91090620 91090660 -53191829 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 833 77 8 31 chr12 91090663 91090793 -53191696 - HERVL LTR ERVL -169 5485 5359 224 167 25 50 chr12 91090823 91090943 -53191546 + (TA)n Simple_repeat Simple_repeat 2 118 0 334 250 51 13 chr12 91091514 91091670 -53190819 + L1M3de LINE L1 1743 1904 -4749 561 277 46 43 chr12 91091671 91091966 -53190523 + L1MEc LINE L1 1247 1545 -4851 1555 182 64 27 chr12 91091966 91092339 -53190150 + MLT1B LTR MaLR 1 387 -3 561 277 46 43 chr12 91092339 91092437 -53190052 + L1MEc LINE L1 1545 1641 -4755 194 346 51 0 chr12 91092843 91092921 -53189568 + MIR SINE MIR 111 192 -70 2048 122 3 11 chr12 91093204 91093490 -53188999 + AluSc SINE Alu 1 284 -25 180 0 0 0 chr12 91093494 91093514 -53188975 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 908 216 40 116 chr12 91093748 91093995 -53188494 - MLT1B LTR MaLR 0 390 126 315 71 0 0 chr12 91093995 91094037 -53188452 + (CA)n Simple_repeat Simple_repeat 1 42 0 195 42 0 0 chr12 91094036 91094060 -53188429 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 908 216 40 116 chr12 91094037 91094234 -53188255 - MLT1B LTR MaLR -264 126 1 2364 248 128 44 chr12 91094234 91094791 -53187698 + HAL1 LINE L1 621 1130 -1377 1861 155 3 23 chr12 91094791 91095101 -53187388 + AluSx SINE Alu 1 304 -8 2364 248 128 44 chr12 91095101 91095695 -53186794 + HAL1 LINE L1 1130 1868 -639 6781 33 0 0 chr12 91095939 91096760 -53185729 - L1P LINE L1 -1049 5097 4277 3283 19 0 0 chr12 91096760 91097133 -53185356 + L1PA2 LINE L1 5778 6155 0 341 309 63 38 chr12 91097316 91097498 -53184991 + MIR SINE MIR 5 191 -71 495 350 70 51 chr12 91097571 91098255 -53184234 - L2 LINE L2 0 3272 2578 252 208 57 0 chr12 91098337 91098390 -53184099 + MIR SINE MIR 128 183 -79 202 296 0 0 chr12 91099206 91099250 -53183239 - L2 LINE L2 -38 3234 3191 431 309 122 62 chr12 91100058 91100378 -53182111 + L2 LINE L2 2933 3271 -1 21 0 0 0 chr12 91100844 91100865 -53181624 + AT_rich Low_complexity Low_complexity 1 21 0 632 280 78 45 chr12 91100866 91101109 -53181380 + MIR SINE MIR 1 251 -11 28 61 0 0 chr12 91101963 91102012 -53180477 + AT_rich Low_complexity Low_complexity 1 49 0 7244 42 2 0 chr12 91102160 91103137 -53179352 + L1PA4 LINE L1 5159 6137 -18 182 114 0 29 chr12 91103139 91103174 -53179315 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 357 357 6 6 chr12 91103407 91103575 -53178914 + CT-rich Low_complexity Low_complexity 2 169 0 24 0 0 0 chr12 91103838 91103862 -53178627 + AT_rich Low_complexity Low_complexity 1 24 0 621 275 81 47 chr12 91104688 91104924 -53177565 - MIR SINE MIR -11 251 8 21 0 0 0 chr12 91104932 91104953 -53177536 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 91105416 91105438 -53177051 + GC_rich Low_complexity Low_complexity 1 22 0 326 314 64 95 chr12 91105767 91106050 -53176439 + L1M2 LINE L1 843 1116 -5733 23 33 0 0 chr12 91107569 91107599 -53174890 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr12 91109386 91109442 -53173047 + AT_rich Low_complexity Low_complexity 1 56 0 25 0 0 0 chr12 91109882 91109907 -53172582 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr12 91110558 91110583 -53171906 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr12 91111171 91111193 -53171296 + AT_rich Low_complexity Low_complexity 1 22 0 2296 106 0 6 chr12 91112046 91112357 -53170132 + AluSq SINE Alu 1 309 -4 323 286 66 0 chr12 91112579 91112670 -53169819 + L2 LINE L2 3197 3293 -20 302 185 0 15 chr12 91112847 91112912 -53169577 + HsTC2 DNA Tc2 3 66 -1832 205 250 16 31 chr12 91113428 91113492 -53168997 - MIR SINE MIR -109 153 91 39 22 0 0 chr12 91114275 91114321 -53168168 + AT_rich Low_complexity Low_complexity 1 46 0 28 0 0 0 chr12 91114335 91114363 -53168126 + AT_rich Low_complexity Low_complexity 1 28 0 416 189 34 34 chr12 91114365 91114540 -53167949 + (TATAA)n Simple_repeat Simple_repeat 2 176 0 22 0 0 0 chr12 91114540 91114562 -53167927 + AT_rich Low_complexity Low_complexity 1 22 0 202 200 8 69 chr12 91114645 91114775 -53167714 + (TTATA)n Simple_repeat Simple_repeat 5 126 0 25332 28 5 0 chr12 91115169 91118996 -53163493 + L1PA2 LINE L1 2325 6155 0 343 113 72 10 chr12 91118996 91119093 -53163396 + (TATAA)n Simple_repeat Simple_repeat 4 106 0 505 52 100 16 chr12 91119093 91119344 -53163145 + (TA)n Simple_repeat Simple_repeat 1 272 0 14120 196 26 27 chr12 91119345 91119743 -53162746 - L1P4 LINE L1 -374 5791 5394 2334 81 0 3 chr12 91119743 91120039 -53162450 - AluY SINE Alu -16 295 1 14120 196 26 27 chr12 91120039 91120704 -53161785 - L1P4 LINE L1 -771 5394 4730 1743 131 81 36 chr12 91120704 91121063 -53161426 - THE1C LTR MaLR 0 375 1 14120 196 26 27 chr12 91121063 91121990 -53160499 - L1P4 LINE L1 -1435 4730 3804 2088 119 0 32 chr12 91121990 91122301 -53160188 - AluSx SINE Alu -11 301 1 14120 196 26 27 chr12 91122301 91124158 -53158331 - L1P4 LINE L1 -2361 3804 1947 1938 144 13 45 chr12 91124158 91124534 -53157955 + THE1B LTR MaLR 1 364 0 11467 96 9 2 chr12 91124534 91126104 -53156385 + THE1B-int LTR MaLR 1 1580 0 1614 142 43 67 chr12 91126104 91126477 -53156012 + THE1B LTR MaLR 1 364 0 14120 196 26 27 chr12 91126477 91126570 -53155919 - L1P4 LINE L1 -4215 1950 1854 323 324 79 58 chr12 91126768 91127009 -53155480 + L1M2 LINE L1 1157 1402 -5447 339 141 0 0 chr12 91127010 91127088 -53155401 + (C)n Simple_repeat Simple_repeat 1 78 0 306 254 23 15 chr12 91127091 91127221 -53155268 + C-rich Low_complexity Low_complexity 4 134 0 241 211 62 19 chr12 91127414 91127621 -53154868 + (TATAA)n Simple_repeat Simple_repeat 1 216 0 230 311 111 0 chr12 91127677 91127812 -53154677 + MIR SINE MIR 101 250 -12 4756 177 83 2 chr12 91128015 91128985 -53153504 - L1MC1 LINE L1 0 6333 5285 1965 164 13 39 chr12 91128990 91129379 -53153110 - L1PA15 LINE L1 -5 6160 5782 584 142 34 11 chr12 91129380 91129891 -53152598 + (TA)n Simple_repeat Simple_repeat 1 522 0 6430 30 0 0 chr12 91129909 91130668 -53151821 + L1P LINE L1 1474 2232 -3914 323 239 0 0 chr12 91130768 91130835 -53151654 - MIR SINE MIR -133 129 63 1266 162 16 43 chr12 91131097 91131350 -53151139 + MER96B DNA MER1_type? 171 416 -1 21 36 0 0 chr12 91131721 91131749 -53150740 + AT_rich Low_complexity Low_complexity 1 28 0 190 70 0 70 chr12 91132877 91132920 -53149569 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 392 0 0 0 chr12 91132921 91132969 -53149520 - L1PA3 LINE L1 -3 6152 6105 504 153 0 12 chr12 91133069 91133154 -53149335 + THE1B LTR MaLR 281 364 0 2633 237 6 0 chr12 91133154 91133792 -53148697 - L1PA15-16 LINE L1 -4199 2650 2009 4534 280 54 26 chr12 91133802 91135218 -53147271 - L1PA15-16 LINE L1 -5331 1508 53 2089 215 15 20 chr12 91135234 91135773 -53146716 - L1MC1 LINE L1 -849 5297 4762 344 184 0 58 chr12 91135885 91135988 -53146501 - L1MA7 LINE L1 -3 6288 6192 277 151 0 38 chr12 91135993 91136046 -53146443 - L1MC1 LINE L1 -1376 4770 4720 2498 114 22 3 chr12 91136433 91136801 -53145688 - THE1C LTR MaLR 0 375 1 1829 286 22 14 chr12 91137964 91138464 -53144025 + LTR40a LTR ERVL 1 504 -15 1631 166 27 14 chr12 91139264 91139386 -53143103 + AluJo SINE Alu 1 120 -192 180 77 0 0 chr12 91139386 91139412 -53143077 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1631 166 27 14 chr12 91139412 91139585 -53142904 + AluJo SINE Alu 120 300 -12 213 39 0 0 chr12 91139591 91139617 -53142872 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 21 0 0 0 chr12 91139802 91139823 -53142666 + AT_rich Low_complexity Low_complexity 1 21 0 208 154 44 33 chr12 91139974 91140065 -53142424 + (TA)n Simple_repeat Simple_repeat 2 93 0 354 45 0 0 chr12 91140065 91140109 -53142380 + (GA)n Simple_repeat Simple_repeat 2 45 0 352 307 44 0 chr12 91140214 91140351 -53142138 + L1ME3A LINE L1 2158 2300 -4096 888 253 93 47 chr12 91140372 91141068 -53141421 + L1ME3A LINE L1 2303 3030 -3185 521 293 38 11 chr12 91141069 91141356 -53141133 + L1ME3A LINE L1 3211 3505 -2710 709 294 107 57 chr12 91141592 91142713 -53139776 + L1ME3A LINE L1 4587 5792 -447 2148 96 10 10 chr12 91142713 91143027 -53139462 - L1PA13 LINE L1 -19 6144 5831 709 294 107 57 chr12 91143027 91143268 -53139221 + L1ME3A LINE L1 5792 6019 -220 2520 81 22 8 chr12 91143372 91143730 -53138759 - L1PA7 LINE L1 -2 6152 5790 46 74 0 0 chr12 91143799 91143894 -53138595 + AT_rich Low_complexity Low_complexity 1 95 0 257 184 0 0 chr12 91144080 91144118 -53138371 - MER2 DNA MER2_type -306 39 2 1253 38 0 0 chr12 91145305 91145462 -53137027 - L1PA4 LINE L1 -1 6154 5998 1927 133 0 19 chr12 91145464 91145772 -53136717 - AluSx SINE Alu -10 302 1 21 0 0 0 chr12 91145850 91145871 -53136618 + AT_rich Low_complexity Low_complexity 1 21 0 184 116 23 93 chr12 91145992 91146035 -53136454 - L2 LINE L2 -5 3308 3269 606 348 192 14 chr12 91146210 91147245 -53135244 - L2 LINE L2 -203 3069 1851 232 306 56 21 chr12 91147360 91147504 -53134985 - L2 LINE L2 -1676 1638 1490 200 376 65 0 chr12 91147841 91147934 -53134555 + L2 LINE L2 3147 3245 -27 23 0 0 0 chr12 91148506 91148529 -53133960 + AT_rich Low_complexity Low_complexity 1 23 0 2781 13 0 0 chr12 91148621 91148932 -53133557 + AluYa5 SINE Alu 1 311 0 5757 70 18 1 chr12 91149116 91149883 -53132606 + L1PA7 LINE L1 5362 6141 -13 646 217 169 0 chr12 91150032 91150198 -53132291 - MER2 DNA MER2_type 0 345 152 1846 182 37 11 chr12 91151703 91152083 -53130406 - MLT1B LTR MaLR 0 390 1 2398 48 3 0 chr12 91152243 91152536 -53129953 + AluY SINE Alu 1 294 -17 2088 187 46 11 chr12 91152947 91153386 -53129103 - MSTB2 LTR MaLR 0 457 4 1425 229 0 20 chr12 91155437 91155738 -53126751 + AluJb SINE Alu 1 295 -17 230 324 0 0 chr12 91156413 91156487 -53126002 + L1MDa LINE L1 1763 1836 -4704 536 331 133 18 chr12 91156807 91157145 -53125344 - LTR16A LTR ERVL -12 438 62 267 341 77 4 chr12 91157240 91157486 -53125003 + L1M4 LINE L1 4553 4816 -1330 34 72 0 0 chr12 91207490 91207559 -53074930 + AT_rich Low_complexity Low_complexity 1 69 0 25 31 0 0 chr12 91207700 91207732 -53074757 + AT_rich Low_complexity Low_complexity 1 32 0 206 286 24 12 chr12 91209759 91209843 -53072646 + (TG)n Simple_repeat Simple_repeat 1 85 0 655 348 42 35 chr12 91211241 91211646 -53070843 + L3 LINE CR1 971 1378 -199 316 405 52 0 chr12 91212267 91212477 -53070012 + MIR SINE MIR 41 261 -1 232 256 12 0 chr12 91213538 91213620 -53068869 + (TA)n Simple_repeat Simple_repeat 1 83 0 22 35 0 0 chr12 91213642 91213671 -53068818 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr12 91214624 91214659 -53067830 + AT_rich Low_complexity Low_complexity 1 35 0 396 59 0 0 chr12 91218733 91218784 -53063705 + (TG)n Simple_repeat Simple_repeat 2 52 0 1946 84 69 4 chr12 91218788 91219050 -53063439 - AluSq SINE Alu -34 279 1 1103 243 40 60 chr12 91220261 91220730 -53061759 + Charlie4a DNA MER1_type 25 484 -24 336 272 24 40 chr12 91220941 91221066 -53061423 - MIR SINE MIR -51 211 89 23 0 0 0 chr12 91221420 91221443 -53061046 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr12 91221634 91221677 -53060812 + AT_rich Low_complexity Low_complexity 1 43 0 24 77 0 0 chr12 91221711 91221763 -53060726 + AT_rich Low_complexity Low_complexity 1 52 0 189 111 0 0 chr12 91222697 91222724 -53059765 - L2 LINE L2 -8 3305 3279 4859 184 62 4 chr12 91225647 91226732 -53055757 - L1MC2 LINE L1 -9 6335 5188 * 42617 34 21 3 chr12 91226721 91232761 -53049728 - L1PA2 LINE L1 0 6155 3 1451 246 2 25 chr12 91232764 91233162 -53049327 - L1MC2 LINE L1 -939 5207 4819 234 214 191 0 chr12 91233282 91233371 -53049118 - MIR SINE MIR -49 213 108 622 182 24 12 chr12 91233594 91233764 -53048725 + CT-rich Low_complexity Low_complexity 2 173 0 327 239 0 0 chr12 91233822 91233910 -53048579 + CT-rich Low_complexity Low_complexity 1 88 0 731 224 0 0 chr12 91233910 91234035 -53048454 - FLAM_C SINE Alu -8 125 1 507 168 0 4 chr12 91234368 91234502 -53047987 + MER53 DNA DNA 3 186 -3 259 359 43 34 chr12 91234643 91234760 -53047729 + L2 LINE L2 3155 3272 0 1630 138 97 24 chr12 91234926 91235266 -53047223 - MLT1A1 LTR MaLR 0 365 1 437 351 40 5 chr12 91236445 91236647 -53045842 - MIR SINE MIR -1 261 53 682 263 15 0 chr12 91237858 91237995 -53044494 - MIR SINE MIR -90 172 34 247 298 39 39 chr12 91238086 91238190 -53044299 + MIR3 SINE MIR 104 207 -1 222 118 0 0 chr12 91239762 91239796 -53042693 + (T)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr12 91240082 91240103 -53042386 + AT_rich Low_complexity Low_complexity 1 21 0 197 313 0 101 chr12 91240200 91240299 -53042190 + L2 LINE L2 3180 3268 -4 241 351 61 44 chr12 91240330 91240444 -53042045 - L2 LINE L2 -6 3266 3151 498 279 20 20 chr12 91240598 91240845 -53041644 - AluSq SINE Alu -2 311 65 27 0 0 0 chr12 91241994 91242021 -53040468 + AT_rich Low_complexity Low_complexity 1 27 0 1842 104 0 0 chr12 91242026 91242277 -53040212 - AluSq SINE Alu 0 313 63 225 241 0 35 chr12 91242466 91242524 -53039965 + (TATG)n Simple_repeat Simple_repeat 4 59 0 327 319 181 9 chr12 91242690 91242900 -53039589 + L2 LINE L2 2594 2839 -475 230 277 59 8 chr12 91243129 91243248 -53039241 + L2 LINE L2 3117 3241 -72 796 271 139 28 chr12 91243286 91243674 -53038815 - L2 LINE L2 0 3313 2883 1904 219 75 23 chr12 91243698 91244191 -53038298 - L1MD3 LINE L1 -604 7204 6585 189 74 0 0 chr12 91244191 91244218 -53038271 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1904 219 75 23 chr12 91244218 91244415 -53038074 - L1MD3 LINE L1 -1223 6585 6400 1510 199 0 0 chr12 91245010 91245271 -53037218 - AluJo SINE Alu -51 261 1 234 180 0 40 chr12 91246162 91246212 -53036277 + CT-rich Low_complexity Low_complexity 2 49 0 205 229 0 21 chr12 91247549 91247597 -53034892 + A-rich Low_complexity Low_complexity 3 49 0 23 86 0 0 chr12 91247737 91247795 -53034694 + AT_rich Low_complexity Low_complexity 1 58 0 386 284 142 55 chr12 91251992 91252210 -53030279 + MIR SINE MIR 20 256 -6 2538 55 0 0 chr12 91252474 91252784 -53029705 + AluY SINE Alu 1 310 -1 544 288 104 42 chr12 91252880 91253120 -53029369 + MIR SINE MIR 6 260 -2 23 68 0 0 chr12 91253310 91253354 -53029135 + AT_rich Low_complexity Low_complexity 1 44 0 469 291 77 14 chr12 91253650 91253988 -53028501 - MLT1I LTR MaLR 0 409 6 238 360 58 0 chr12 91254161 91254247 -53028242 - L2 LINE L2 -49 3223 3133 2183 86 4 0 chr12 91254623 91254930 -53027559 + AluSp SINE Alu 3 310 0 331 299 60 30 chr12 91256039 91256173 -53026316 + MIR SINE MIR 54 191 -71 451 372 115 29 chr12 91256684 91256952 -53025537 + L2 LINE L2 1965 2209 -1105 1860 221 80 4 chr12 91256952 91257417 -53025072 - MLT1D LTR MaLR -2 503 4 451 372 115 29 chr12 91257417 91257626 -53024863 + L2 LINE L2 2209 2483 -831 428 324 95 8 chr12 91258108 91258349 -53024140 + MLT1J1 LTR MaLR 16 277 -169 468 217 142 17 chr12 91258404 91258524 -53023965 + MIR SINE MIR 121 255 -7 294 333 0 11 chr12 91259350 91259440 -53023049 + MIR SINE MIR 19 107 -155 * 1146 288 104 43 chr12 91259434 91260450 -53022039 - L2 LINE L2 0 3313 2141 278 356 10 0 chr12 91260457 91260561 -53021928 + MIR SINE MIR 150 254 -8 237 236 214 73 chr12 91260824 91261002 -53021487 + L2 LINE L2 3111 3313 0 224 324 27 54 chr12 91261009 91261231 -53021258 - MIR SINE MIR -27 235 20 203 424 12 18 chr12 91261236 91261406 -53021083 - L3 LINE CR1 -53 1524 1356 1579 228 280 10 chr12 91261553 91262071 -53020418 - L1MC4 LINE L1 -196 7846 7469 1743 159 60 30 chr12 91262071 91262435 -53020054 - THE1C LTR MaLR 0 375 1 1579 228 280 10 chr12 91262435 91262709 -53019780 - L1MC4 LINE L1 -573 7469 6840 543 335 101 38 chr12 91262981 91263378 -53019111 - L3 LINE CR1 -3 1574 1153 21 0 0 0 chr12 91263703 91263724 -53018765 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 91264669 91264705 -53017784 + AT_rich Low_complexity Low_complexity 1 36 0 221 246 53 18 chr12 91268668 91268725 -53013764 + L2 LINE L2 3207 3265 -7 308 352 57 24 chr12 91269950 91270160 -53012329 - L2 LINE L2 -1339 1975 1759 470 137 0 0 chr12 91270472 91270560 -53011929 + L1MB1 LINE L1 6078 6165 -3 243 0 0 0 chr12 91271609 91271636 -53010853 + (TG)n Simple_repeat Simple_repeat 2 28 0 222 310 56 56 chr12 91273178 91273320 -53009169 - MIR SINE MIR -65 197 56 282 56 0 0 chr12 91274134 91274170 -53008319 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 310 265 31 0 chr12 91274238 91274336 -53008153 - MER5C DNA MER1_type -216 108 8 292 282 98 83 chr12 91274302 91274579 -53007910 + L2 LINE L2 2567 2847 -467 * 822 184 184 8 chr12 91274713 91274952 -53007537 - MER58B DNA MER1_type 0 341 61 290 333 11 0 chr12 91275158 91275245 -53007244 + L2 LINE L2 3185 3272 0 5607 161 37 8 chr12 91275306 91275420 -53007069 + L1PA16 LINE L1 4272 4381 -1785 216 0 0 0 chr12 91275420 91275444 -53007045 + (CA)n Simple_repeat Simple_repeat 2 25 0 5607 161 37 8 chr12 91275444 91277145 -53005344 + L1PA16 LINE L1 4381 6148 -18 2032 142 7 0 chr12 91277573 91277882 -53004607 + AluSx SINE Alu 1 311 -1 291 316 166 29 chr12 91278044 91278357 -53004132 + MLT1L LTR MaLR 1 356 -259 25 51 0 0 chr12 91280015 91280054 -53002435 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr12 91280322 91280350 -53002139 + AT_rich Low_complexity Low_complexity 1 28 0 521 307 25 46 chr12 91280639 91280693 -53001796 - MIR SINE MIR 0 262 208 1696 153 33 44 chr12 91280693 91281060 -53001429 + THE1B LTR MaLR 1 363 -1 521 307 25 46 chr12 91281060 91281243 -53001246 - MIR SINE MIR -54 208 30 2024 191 12 60 chr12 91281256 91281326 -53001163 + MER74C LTR ERVL 1 73 -387 2316 80 20 0 chr12 91281326 91281627 -53000862 - AluSq SINE Alu -6 307 1 2024 191 12 60 chr12 91281627 91282039 -53000450 + MER74C LTR ERVL 73 460 0 1910 138 7 0 chr12 91282088 91282396 -53000093 - AluSx SINE Alu 0 310 1 1078 208 23 9 chr12 91282849 91283070 -52999419 - MER58A DNA MER1_type 0 224 1 1516 120 138 31 chr12 91283495 91283784 -52998705 - MER46B DNA MER2_type -2495 236 32 2149 117 3 0 chr12 91283784 91284082 -52998407 + AluSg SINE Alu 1 299 -11 1516 120 138 31 chr12 91284082 91284118 -52998371 - MER46B DNA MER2_type -2699 32 1 354 311 64 95 chr12 91284160 91284456 -52998033 + L2 LINE L2 2986 3272 0 225 65 0 0 chr12 91285456 91285487 -52997002 + (TA)n Simple_repeat Simple_repeat 1 31 0 327 250 45 0 chr12 91285487 91285575 -52996914 - L1MC4 LINE L1 -1339 6703 6612 467 140 9 26 chr12 91285577 91285691 -52996798 + (TA)n Simple_repeat Simple_repeat 1 112 0 209 238 0 0 chr12 91286135 91286177 -52996312 - L2 LINE L2 0 3272 3231 2532 122 3 0 chr12 91287596 91287958 -52994531 - L1PA15 LINE L1 -72 6093 5731 181 355 65 0 chr12 91287991 91288053 -52994436 + MIR SINE MIR 77 142 -66 312 145 0 0 chr12 91288427 91288489 -52994000 - L1MC1 LINE L1 0 6333 6272 242 179 0 0 chr12 91288494 91288533 -52993956 - L1MC1 LINE L1 -45 6288 6250 339 343 191 11 chr12 91288637 91289176 -52993313 + L2 LINE L2 1846 2481 -833 719 274 20 47 chr12 91289185 91289440 -52993049 + MIR SINE MIR 15 262 0 32 57 0 0 chr12 91291029 91291082 -52991407 + AT_rich Low_complexity Low_complexity 1 53 0 234 363 67 22 chr12 91291095 91291230 -52991259 - MIR SINE MIR -74 188 48 266 224 53 13 chr12 91292124 91292200 -52990289 + MLT1K LTR MaLR 396 474 -114 21 0 0 0 chr12 91292230 91292251 -52990238 + AT_rich Low_complexity Low_complexity 1 21 0 302 298 60 31 chr12 91292685 91293127 -52989362 + L1M4 LINE L1 4332 4827 -1319 650 237 44 42 chr12 91293797 91293987 -52988502 + MLT1G1 LTR MaLR 92 284 -311 8432 156 76 31 chr12 91293988 91294162 -52988327 - Ricksha_c DNA DNA -1208 2046 1881 2331 72 0 0 chr12 91294162 91294454 -52988035 + AluY SINE Alu 1 292 -19 8432 156 76 31 chr12 91294454 91295904 -52986585 - Ricksha_c DNA DNA -1373 1881 349 955 151 129 5 chr12 91295903 91296089 -52986400 - Ricksha_c DNA DNA -1812 234 26 * 2140 110 31 0 chr12 91296259 91296549 -52985940 - AluSx SINE Alu -13 299 1 337 280 143 50 chr12 91296737 91297116 -52985373 - L1M4 LINE L1 -1710 4436 4023 254 227 67 13 chr12 91297333 91297408 -52985081 - HAL1b LINE L1 -711 637 559 1287 65 6 0 chr12 91297422 91297591 -52984898 + L1PA8 LINE L1 6001 6170 -2 257 277 157 3 chr12 91297619 91297821 -52984668 + L1MC/D LINE L1 5687 5932 -328 1712 178 12 5 chr12 91297985 91298295 -52984194 + MLT1B LTR MaLR 15 340 -50 345 297 125 28 chr12 91298365 91298685 -52983804 - HAL1b LINE L1 -907 441 91 33 66 0 0 chr12 91299947 91300008 -52982481 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr12 91300773 91300803 -52981686 + AT_rich Low_complexity Low_complexity 1 30 0 290 295 107 36 chr12 91301208 91301432 -52981057 - L2 LINE L2 -97 3216 2977 213 119 0 0 chr12 91301507 91301549 -52980940 + (TG)n Simple_repeat Simple_repeat 1 42 0 301 300 67 0 chr12 91301759 91301879 -52980610 + L1M4 LINE L1 2685 2812 -3334 534 302 76 44 chr12 91301961 91302305 -52980184 + L1M4 LINE L1 2929 3283 -2863 247 282 77 62 chr12 91302547 91302756 -52979733 + L1M4 LINE L1 3631 3842 -2304 308 356 25 46 chr12 91302760 91302999 -52979490 - L2 LINE L2 -515 2799 2566 252 322 34 8 chr12 91303031 91303149 -52979340 + MER94 DNA DNA 11 131 -3 455 320 114 20 chr12 91303183 91303489 -52979000 - L2 LINE L2 -799 2515 2181 564 269 57 44 chr12 91303826 91304055 -52978434 - MIR SINE MIR -2 260 31 233 361 26 60 chr12 91304510 91304862 -52977627 + L2 LINE L2 2400 2739 -575 1611 206 43 13 chr12 91304917 91305315 -52977174 - MER63C DNA MER1_type 0 931 522 662 218 27 0 chr12 91305356 91305503 -52976986 + MER58B DNA MER1_type 182 332 -9 510 273 0 30 chr12 91305509 91305641 -52976848 - MER58A DNA MER1_type 0 128 1 1961 218 39 21 chr12 91305641 91306154 -52976335 - MER63C DNA MER1_type -405 525 4 311 254 0 0 chr12 91306464 91306531 -52975958 + MER58A DNA MER1_type 94 160 0 1511 182 94 24 chr12 91306968 91307309 -52975180 - MLT1A1 LTR MaLR 0 365 1 180 346 39 54 chr12 91307309 91307439 -52975050 + L2 LINE L2 3141 3268 -4 24 77 0 0 chr12 91308404 91308456 -52974033 + AT_rich Low_complexity Low_complexity 1 52 0 602 281 88 45 chr12 91310484 91310865 -52971624 - L2 LINE L2 -265 3048 2654 3142 137 0 10 chr12 91310880 91311391 -52971098 - L1PA13 LINE L1 0 6163 5658 1206 206 10 24 chr12 91311391 91311672 -52970817 + L1P LINE L1 4167 4445 -1701 35 24 0 0 chr12 91311935 91311977 -52970512 + AT_rich Low_complexity Low_complexity 1 42 0 1387 156 0 0 chr12 91311979 91312190 -52970299 + AluJb SINE Alu 87 297 -15 24 0 0 0 chr12 91313748 91313772 -52968717 + AT_rich Low_complexity Low_complexity 1 24 0 1110 200 14 0 chr12 91314188 91314403 -52968086 + MER20 DNA MER1_type 2 219 0 242 289 216 0 chr12 91314461 91314558 -52967931 + L2 LINE L2 3193 3310 -3 184 304 14 29 chr12 91315436 91315505 -52966984 + L2 LINE L2 2587 2654 -660 285 29 0 0 chr12 91315541 91315575 -52966914 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 294 300 136 0 chr12 91315920 91316030 -52966459 + L2 LINE L2 3170 3294 -19 2220 225 33 48 chr12 91316058 91316788 -52965701 + L1ME2 LINE L1 5464 6333 -1 192 40 0 0 chr12 91317633 91317658 -52964831 + (TA)n Simple_repeat Simple_repeat 2 26 0 6909 39 1 2 chr12 91317658 91318490 -52963999 - L1PA5 LINE L1 -15 6139 5309 1507 39 1 0 chr12 91318480 91318680 -52963809 + L1P LINE L1 5136 5336 -818 * 187 402 25 8 chr12 91318900 91319022 -52963467 - L2 LINE L2 -903 2411 2288 1830 291 134 37 chr12 91319195 91320125 -52962364 + L2 LINE L2 2069 3084 -229 1556 100 8 12 chr12 91320388 91320628 -52961861 + L1PA13 LINE L1 5925 6163 0 472 271 106 0 chr12 91321010 91321161 -52961328 - MIR3 SINE MIR -24 184 18 213 250 0 0 chr12 91321712 91321760 -52960729 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 532 310 66 10 chr12 91323448 91323645 -52958844 - MIR SINE MIR 0 262 55 22 35 0 0 chr12 91323953 91323982 -52958507 + AT_rich Low_complexity Low_complexity 1 29 0 238 275 65 70 chr12 91325001 91325201 -52957288 - L1ME LINE L1 -337 5784 5586 2158 105 0 3 chr12 91325603 91325898 -52956591 - AluSq SINE Alu -19 294 1 542 306 65 31 chr12 91325898 91326192 -52956297 - MLT1J1 LTR MaLR -52 394 91 460 309 74 0 chr12 91326207 91326356 -52956133 + MIR SINE MIR 89 248 -14 315 287 220 37 chr12 91326447 91326743 -52955746 + HAL1b LINE L1 350 699 -649 24 53 0 0 chr12 91326764 91326802 -52955687 + AT_rich Low_complexity Low_complexity 1 38 0 194 62 31 0 chr12 91327012 91327044 -52955445 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 229 324 98 43 chr12 91327109 91327482 -52955007 - L2 LINE L2 -720 2594 2194 916 206 48 5 chr12 91327482 91327691 -52954798 - MER20 DNA MER1_type 0 219 2 229 324 98 43 chr12 91327691 91327737 -52954752 - L2 LINE L2 -1120 2194 2152 23 68 0 0 chr12 91329934 91329978 -52952511 + AT_rich Low_complexity Low_complexity 1 44 0 21 82 0 0 chr12 91330025 91330074 -52952415 + AT_rich Low_complexity Low_complexity 1 49 0 1879 124 3 52 chr12 91330679 91330985 -52951504 + AluSx SINE Alu 1 291 -21 1693 158 4 0 chr12 91331124 91331396 -52951093 + AluJb SINE Alu 30 302 -10 508 260 93 0 chr12 91331611 91331761 -52950728 - MIR SINE MIR -54 208 45 219 36 0 0 chr12 91331847 91331875 -52950614 + (AATAG)n Simple_repeat Simple_repeat 5 32 0 362 340 21 0 chr12 91332051 91332192 -52950297 + MIR SINE MIR 21 164 -98 615 338 37 20 chr12 91332210 91332506 -52949983 - MLT1I LTR MaLR -29 380 80 242 283 18 62 chr12 91332542 91332655 -52949834 + MIR SINE MIR 143 250 -12 437 321 34 63 chr12 91337211 91337448 -52945041 - MIR SINE MIR -21 241 12 219 323 31 31 chr12 91337766 91337893 -52944596 - MIR SINE MIR -50 212 86 710 159 25 5 chr12 91339215 91339418 -52943071 + CT-rich Low_complexity Low_complexity 1 207 0 189 0 0 0 chr12 91340935 91340956 -52941533 + (T)n Simple_repeat Simple_repeat 1 21 0 198 0 0 0 chr12 91341464 91341486 -52941003 + (T)n Simple_repeat Simple_repeat 1 22 0 502 342 61 9 chr12 91342897 91343125 -52939364 + MIR SINE MIR 20 259 -3 321 281 12 104 chr12 91343244 91343322 -52939167 - L2 LINE L2 0 3313 3256 1199 179 195 0 chr12 91343322 91343624 -52938865 - MER46B DNA MER2_type 0 236 1 321 281 12 104 chr12 91343624 91343709 -52938780 - L2 LINE L2 -57 3256 3165 218 321 191 8 chr12 91344316 91344447 -52938042 - L2 LINE L2 -199 3073 2919 820 253 107 62 chr12 91344899 91345003 -52937486 - MLT1G1 LTR MaLR -220 375 277 2118 116 17 3 chr12 91345003 91345295 -52937194 - AluSx SINE Alu -12 300 5 820 253 107 62 chr12 91345295 91345546 -52936943 - MLT1G1 LTR MaLR -318 277 4 1868 132 7 42 chr12 91345912 91346222 -52936267 + AluSx SINE Alu 1 299 -13 1708 123 20 97 chr12 91346359 91346700 -52935789 - AluYb8 SINE Alu -3 315 1 187 308 19 0 chr12 91347014 91347066 -52935423 + MIR SINE MIR 189 241 -21 267 152 0 0 chr12 91347316 91347362 -52935127 + T-rich Low_complexity Low_complexity 1 46 0 638 230 64 49 chr12 91347817 91348021 -52934468 - MER3 DNA MER1_type -1 208 2 295 296 45 28 chr12 91348063 91348239 -52934250 - L1M4 LINE L1 -933 5213 5035 7485 37 2 0 chr12 91348608 91349853 -52932636 - L1PA4 LINE L1 0 6155 4910 4293 38 0 0 chr12 91349853 91350377 -52932112 + L1PA4 LINE L1 4386 4909 -1237 2987 148 24 69 chr12 91350944 91350984 -52931505 - MLT2B3 LTR ERVL 0 554 514 486 49 0 0 chr12 91350984 91351045 -52931444 + (TGGA)n Simple_repeat Simple_repeat 2 62 0 2987 148 24 69 chr12 91351045 91351584 -52930905 - MLT2B3 LTR ERVL -40 514 1 404 157 112 0 chr12 91351663 91351752 -52930737 + AluJ/FLAM SINE Alu 1 99 -213 479 122 178 19 chr12 91351769 91351876 -52930613 + AluSg/x SINE Alu 188 311 -1 202 195 0 24 chr12 91352373 91352414 -52930075 + MIR SINE MIR 213 252 -10 26 0 0 0 chr12 91353197 91353223 -52929266 + AT_rich Low_complexity Low_complexity 1 26 0 1422 221 42 0 chr12 91353588 91353923 -52928566 + L1ME2 LINE L1 5698 6046 -118 372 43 0 0 chr12 91353924 91353970 -52928519 + (TA)n Simple_repeat Simple_repeat 1 46 0 4460 149 15 11 chr12 91353971 91354721 -52927768 - L1PA15 LINE L1 -16 6149 5397 3341 202 24 23 chr12 91354728 91355558 -52926931 - L1PA15 LINE L1 -1070 5076 4246 727 314 9 5 chr12 91355719 91355942 -52926547 - L1PA12 LINE L1 -7350 231 8 1541 263 24 15 chr12 91356039 91356496 -52925993 - LTR40b LTR ERVL 0 462 2 206 333 188 9 chr12 91356496 91356709 -52925780 + L3 LINE CR1 347 597 -980 416 389 23 12 chr12 91356711 91356968 -52925521 + L2 LINE L2 795 1054 -2260 1897 190 28 0 chr12 91356992 91357345 -52925144 + MLT1A1 LTR MaLR 1 363 -2 213 333 69 0 chr12 91357489 91357561 -52924928 + L2 LINE L2 1129 1205 -2109 393 336 75 19 chr12 91357594 91357808 -52924681 + L2 LINE L2 1190 1415 -1899 2087 83 0 68 chr12 91358151 91358476 -52924013 + AluY SINE Alu 1 303 -8 180 0 0 0 chr12 91358908 91358928 -52923561 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 344 298 57 72 chr12 91358946 91359076 -52923413 - L2 LINE L2 -48 3265 3139 2542 47 0 0 chr12 91359076 91359373 -52923116 + AluY SINE Alu 3 299 -12 344 298 57 72 chr12 91359373 91359504 -52922985 - L2 LINE L2 -174 3139 3008 338 261 0 11 chr12 91359681 91359769 -52922720 + MER45A DNA AcHobo 89 175 -3 389 289 7 37 chr12 91359888 91360023 -52922466 - L2 LINE L2 -594 2720 2590 240 246 0 16 chr12 91361695 91361756 -52920733 - MLT1I LTR MaLR -3 406 347 947 145 0 91 chr12 91362109 91362295 -52920194 - AluSg/x SINE Alu -7 303 135 230 136 23 0 chr12 91362482 91362526 -52919963 + CT-rich Low_complexity Low_complexity 2 46 0 1231 277 137 79 chr12 91363656 91364643 -52917846 - L2 LINE L2 0 3313 2255 32 26 0 0 chr12 91364898 91364937 -52917552 + AT_rich Low_complexity Low_complexity 1 39 0 4740 170 50 30 chr12 91364946 91365965 -52916524 - L1MA4 LINE L1 0 6300 5262 846 195 25 0 chr12 91365982 91366141 -52916348 - FRAM SINE Alu -14 162 1 2776 182 12 15 chr12 91366153 91366752 -52915737 - L1MA4 LINE L1 -887 5259 4663 678 198 0 13 chr12 91366751 91366908 -52915581 - L1MA7 LINE L1 -5 6286 6132 * 388 171 95 26 chr12 91366899 91367016 -52915473 + L1MA8 LINE L1 5902 6038 -266 * 1073 191 0 0 chr12 91367311 91367526 -52914963 - L1MA6 LINE L1 -15 6285 6071 1827 144 18 56 chr12 91367528 91367867 -52914622 + MER1B DNA MER1_type 5 330 -9 651 179 0 8 chr12 91367878 91368001 -52914488 - L1MA6 LINE L1 -218 6082 5961 1482 271 58 44 chr12 91368348 91369075 -52913414 + L1MC4 LINE L1 7165 7901 -141 228 351 52 0 chr12 91369396 91369473 -52913016 - MIR SINE MIR -162 100 20 239 372 0 0 chr12 91369636 91369714 -52912775 + MIR3 SINE MIR 127 204 -4 32 43 0 0 chr12 91369910 91369956 -52912533 + AT_rich Low_complexity Low_complexity 1 46 0 32 43 0 0 chr12 91370054 91370100 -52912389 + AT_rich Low_complexity Low_complexity 1 46 0 3481 161 51 55 chr12 91372434 91373222 -52909267 + LTR1 LTR ERV1 1 785 0 743 297 77 45 chr12 91373662 91374063 -52908426 + L2 LINE L2 2895 3308 -5 1562 130 4 0 chr12 91374121 91374360 -52908129 - L1PA10 LINE L1 -15 6153 5914 2363 82 0 28 chr12 91375373 91375692 -52906797 - AluY SINE Alu -1 310 1 333 285 58 15 chr12 91376481 91376618 -52905871 - MIR SINE MIR -54 208 66 360 256 58 8 chr12 91477354 91477475 -52805014 - MER94 DNA DNA -3 131 5 635 216 0 0 chr12 91478115 91478231 -52804258 + FLAM_A SINE Alu 1 116 -17 1283 185 80 42 chr12 91479127 91479414 -52803075 + AluJo SINE Alu 1 298 -4 21 0 0 0 chr12 91479418 91479439 -52803050 + AT_rich Low_complexity Low_complexity 1 21 0 5509 115 31 18 chr12 91479549 91481180 -52801309 + L1PA14 LINE L1 4519 6160 -1 338 167 33 0 chr12 91481315 91481375 -52801114 + L2 LINE L2 3252 3313 0 25 51 0 0 chr12 91482085 91482124 -52800365 + AT_rich Low_complexity Low_complexity 1 39 0 1467 201 43 53 chr12 91482748 91483142 -52799347 + MLT1B LTR MaLR 1 390 0 33 43 0 0 chr12 91483342 91483389 -52799100 + AT_rich Low_complexity Low_complexity 1 47 0 269 317 146 35 chr12 91483992 91484191 -52798298 + L2 LINE L2 3010 3230 -83 424 162 19 0 chr12 91484198 91484303 -52798186 + (TA)n Simple_repeat Simple_repeat 2 108 0 211 268 0 56 chr12 91484528 91484599 -52797890 - L2 LINE L2 -1078 2236 2170 350 340 0 0 chr12 91484616 91484716 -52797773 + MIR SINE MIR 2 101 -161 4984 279 74 20 chr12 91485015 91486478 -52796011 + L1ME1 LINE L1 74 1704 -4511 5874 103 11 6 chr12 91486478 91487935 -52794554 - L1PA13 LINE L1 -2 6161 4687 4984 279 74 20 chr12 91487935 91488979 -52793510 + L1ME1 LINE L1 1704 2690 -3525 2229 140 8 30 chr12 91488979 91489351 -52793138 - THE1B LTR MaLR 0 364 1 10185 105 19 1 chr12 91489351 91490906 -52791583 - THE1B-int LTR MaLR 0 1580 1 2191 134 5 50 chr12 91490906 91491287 -52791202 - THE1B LTR MaLR 0 364 1 372 161 62 0 chr12 91491287 91491368 -52791121 + L1ME1 LINE L1 2686 2771 -3444 * 401 204 24 152 chr12 91491364 91491511 -52790978 + L1ME1 LINE L1 5517 5681 -554 294 29 0 0 chr12 91491511 91491546 -52790943 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1908 139 7 4 chr12 91491548 91491829 -52790660 - AluSp SINE Alu -31 282 1 401 204 24 152 chr12 91491829 91491889 -52790600 + L1ME1 LINE L1 5682 5700 -535 775 233 65 34 chr12 91491897 91492159 -52790330 + L1ME1 LINE L1 5826 6095 -140 423 276 118 0 chr12 91492254 91492381 -52790108 + MIR SINE MIR 74 215 -47 21 36 0 0 chr12 91492704 91492732 -52789757 + AT_rich Low_complexity Low_complexity 1 28 0 342 261 108 45 chr12 91492781 91492892 -52789597 - L2 LINE L2 -1 3312 3195 1653 110 0 107 chr12 91492938 91493246 -52789243 + AluSx SINE Alu 37 311 -1 22 35 0 0 chr12 91493329 91493358 -52789131 + AT_rich Low_complexity Low_complexity 1 29 0 519 314 153 43 chr12 91494871 91495545 -52786944 + L2 LINE L2 1311 2058 -1256 495 274 9 0 chr12 91495841 91495947 -52786542 - L2 LINE L2 -5 3308 3202 181 339 0 0 chr12 91496627 91496689 -52785800 + MIR SINE MIR 85 146 -62 21 36 0 0 chr12 91496759 91496787 -52785702 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr12 91497287 91497313 -52785176 + AT_rich Low_complexity Low_complexity 1 26 0 999 195 82 4 chr12 91498327 91498594 -52783895 - MER3 DNA MER1_type 0 2559 2272 465 250 9 0 chr12 91498632 91498744 -52783745 - MER3 DNA MER1_type -56 153 41 218 301 133 9 chr12 91499016 91499129 -52783360 - MIR3 SINE MIR -38 170 44 21 0 0 0 chr12 91499169 91499190 -52783299 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr12 91499315 91499360 -52783129 + AT_rich Low_complexity Low_complexity 1 45 0 2572 196 13 15 chr12 91499966 91500085 -52782404 - MER89 LTR ERV1 -26 533 415 495 0 0 0 chr12 91500085 91500140 -52782349 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2572 196 13 15 chr12 91500140 91500552 -52781937 - MER89 LTR ERV1 -144 415 3 1504 244 39 24 chr12 91501479 91501937 -52780552 - MLT1C LTR MaLR -2 465 1 370 304 52 0 chr12 91502096 91502211 -52780278 - MIR SINE MIR -23 239 119 2137 109 3 0 chr12 91502474 91502768 -52779721 + AluSx SINE Alu 1 295 -17 1293 174 110 61 chr12 91502768 91503078 -52779411 - MLT1B LTR MaLR -65 325 1 5170 131 11 32 chr12 91504516 91506305 -52776184 - L1PA15 LINE L1 -12 6153 4379 1177 207 115 46 chr12 91506619 91507046 -52775443 - MER39 LTR ERV1 0 648 257 270 290 30 30 chr12 91507016 91507116 -52775373 - LTR48B LTR ERV1 -542 102 3 * 1083 329 41 45 chr12 91507523 91508164 -52774325 + L2 LINE L2 1249 1886 -1428 207 150 25 0 chr12 91508193 91508233 -52774256 - L2 LINE L2 -2 3311 3271 432 0 0 0 chr12 91508680 91508728 -52773761 + (TC)n Simple_repeat Simple_repeat 2 49 0 243 0 0 0 chr12 91508727 91508754 -52773735 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 185 274 110 0 chr12 91510259 91510332 -52772157 - MER5C DNA MER1_type -240 84 4 566 112 131 0 chr12 91510478 91510585 -52771904 + MIR SINE MIR 99 219 -43 862 268 44 13 chr12 91510747 91510975 -52771514 - MIR SINE MIR 0 262 28 342 0 0 0 chr12 91511922 91511960 -52770529 + (TC)n Simple_repeat Simple_repeat 2 39 0 * 414 57 0 0 chr12 91511959 91512012 -52770477 + (TA)n Simple_repeat Simple_repeat 1 53 0 340 139 14 14 chr12 91512448 91512520 -52769969 + HAL1 LINE L1 2121 2192 -315 253 186 0 34 chr12 91512524 91512583 -52769906 - MLT2B1 LTR ERVL 0 520 464 198 203 25 13 chr12 91512586 91512665 -52769824 + (TA)n Simple_repeat Simple_repeat 2 81 0 837 254 132 61 chr12 91512748 91513050 -52769439 - MLT2B1 LTR ERVL -81 439 99 1463 134 57 12 chr12 91513050 91513297 -52769192 + AluSx SINE Alu 1 258 -54 837 254 132 61 chr12 91513297 91513404 -52769085 - MLT2B1 LTR ERVL -421 99 1 269 288 146 58 chr12 91513585 91513790 -52768699 - MIR SINE MIR 0 262 40 * 882 219 18 93 chr12 91513721 91514000 -52768489 + MIR SINE MIR 5 262 0 279 260 125 19 chr12 91514125 91514229 -52768260 - MIR SINE MIR -38 224 110 344 213 151 44 chr12 91514428 91514564 -52767925 + LTR50 LTR ERVL 24 148 -375 1615 221 27 64 chr12 91514577 91515063 -52767426 + MER31B LTR ERV1 1 543 0 339 294 118 0 chr12 91515144 91515280 -52767209 + LTR50 LTR ERVL 473 624 -171 784 304 66 104 chr12 91515385 91516616 -52765873 + HAL1 LINE L1 186 1361 -1146 198 0 0 0 chr12 91516616 91516638 -52765851 + (CAA)n Simple_repeat Simple_repeat 2 23 0 784 304 66 104 chr12 91516638 91516776 -52765713 + HAL1 LINE L1 1361 1503 -1004 426 296 151 48 chr12 91517272 91517644 -52764845 + MLT1K LTR MaLR 151 560 -28 528 310 109 4 chr12 91518140 91518369 -52764120 - MIR SINE MIR -8 254 2 896 234 5 28 chr12 91518879 91519093 -52763396 - MER3 DNA MER1_type 0 209 1 472 268 30 0 chr12 91519230 91519368 -52763121 + MER63A DNA MER1_type 36 182 -28 1645 184 0 39 chr12 91520355 91520664 -52761825 - AluJb SINE Alu -15 297 1 26 74 0 0 chr12 91520719 91520773 -52761716 + AT_rich Low_complexity Low_complexity 1 54 0 543 289 191 29 chr12 91521185 91521458 -52761031 + L2 LINE L2 2358 2674 -640 264 271 8 90 chr12 91521432 91521565 -52760924 + L2 LINE L2 3101 3222 -91 * 221 236 9 0 chr12 91521690 91521796 -52760693 + (TA)n Simple_repeat Simple_repeat 1 107 0 39 31 0 16 chr12 91521858 91521884 -52760605 + AT_rich Low_complexity Low_complexity 1 26 -37 4628 65 2 3 chr12 91521884 91522482 -52760007 - L1PA7 LINE L1 0 6154 5558 39 31 0 16 chr12 91522482 91522519 -52759970 + AT_rich Low_complexity Low_complexity 26 63 0 22 0 0 0 chr12 91522864 91522886 -52759603 + AT_rich Low_complexity Low_complexity 1 22 0 2128 123 0 7 chr12 91523657 91523957 -52758532 + AluSx SINE Alu 1 298 -14 1062 70 0 0 chr12 91524134 91524263 -52758226 + AluY SINE Alu 1 129 -182 384 228 105 18 chr12 91524358 91524472 -52758017 + MER63 DNA MER1_type 1 750 -86 900 330 86 38 chr12 91524554 91524669 -52757820 - L3 LINE CR1 -86 1491 1383 2193 120 3 0 chr12 91524669 91524977 -52757512 + AluSp SINE Alu 1 309 -4 900 330 86 38 chr12 91524977 91525548 -52756941 - L3 LINE CR1 -194 1383 772 423 244 228 25 chr12 91527062 91527259 -52755230 + MIR SINE MIR 14 250 -12 22 0 0 0 chr12 91527800 91527822 -52754667 + AT_rich Low_complexity Low_complexity 1 22 0 183 331 39 51 chr12 91527978 91528156 -52754333 + L2 LINE L2 2619 2794 -520 4451 186 63 20 chr12 91528335 91529817 -52752672 - L1MA10 LINE L1 0 6334 4788 390 240 137 7 chr12 91531488 91531728 -52750761 - LTR37A LTR ERV1 -3 464 199 2529 149 38 9 chr12 91532785 91533207 -52749282 - MER57B LTR ERV1 0 434 1 203 389 28 42 chr12 91534710 91534926 -52747563 - L2 LINE L2 -2623 691 479 1410 218 73 123 chr12 91535029 91535800 -52746689 + LTR8A LTR ERV1 1 593 -10 2009 174 76 2 chr12 91535973 91536380 -52746109 - LTR23 LTR ERV1 0 437 1 289 322 192 8 chr12 91536960 91537205 -52745284 - L3 LINE CR1 -804 773 484 837 182 0 0 chr12 91537210 91537342 -52745147 - FLAM_C SINE Alu -1 132 1 319 391 45 0 chr12 91537819 91537929 -52744560 - L2 LINE L2 -37 3235 3121 22 0 0 0 chr12 91540345 91540367 -52742122 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr12 91540639 91540661 -52741828 + (TA)n Simple_repeat Simple_repeat 2 23 0 447 72 145 0 chr12 91540718 91540787 -52741702 - MADE1 DNA Mariner -1 79 1 31 82 0 0 chr12 91541567 91541640 -52740849 + AT_rich Low_complexity Low_complexity 1 73 0 315 0 0 0 chr12 91541818 91541853 -52740636 + (TG)n Simple_repeat Simple_repeat 1 35 0 17385 185 35 13 chr12 91541864 91544118 -52738371 - L1P4 LINE L1 -684 6915 4712 333 0 0 0 chr12 91544118 91544155 -52738334 + (TG)n Simple_repeat Simple_repeat 2 38 0 17385 185 35 13 chr12 91544155 91548329 -52734160 - L1P4 LINE L1 -2887 4712 1 24 0 0 0 chr12 91548331 91548355 -52734134 + AT_rich Low_complexity Low_complexity 1 24 0 411 21 0 0 chr12 91549162 91549210 -52733279 + (TG)n Simple_repeat Simple_repeat 1 48 0 2326 73 0 13 chr12 91549432 91549732 -52732757 + AluY SINE Alu 1 296 -15 22 70 0 0 chr12 91550553 91550596 -52731893 + AT_rich Low_complexity Low_complexity 1 43 0 1672 215 46 0 chr12 91551344 91551693 -52730796 - MLT1A1 LTR MaLR 0 365 1 1968 136 115 15 chr12 91551818 91552149 -52730340 + THE1B LTR MaLR 1 364 0 11107 102 7 23 chr12 91552150 91552526 -52729963 + THE1B-int LTR MaLR 2 383 -1197 2087 106 4 0 chr12 91552526 91552799 -52729690 - AluSc SINE Alu -35 274 1 11107 102 7 23 chr12 91552799 91552937 -52729552 + THE1B-int LTR MaLR 383 522 -1058 2079 102 0 27 chr12 91552937 91553231 -52729258 - AluY SINE Alu -3 308 23 11107 102 7 23 chr12 91553231 91554320 -52728169 + THE1B-int LTR MaLR 522 1580 0 1999 151 73 14 chr12 91554320 91554664 -52727825 + THE1B LTR MaLR 1 364 0 5218 128 7 14 chr12 91555949 91556997 -52725492 - L1PA16 LINE L1 -10 6156 5119 2592 162 7 2 chr12 91557082 91557508 -52724981 - MSTA LTR MaLR 0 428 1 33 25 0 0 chr12 91558145 91558185 -52724304 + AT_rich Low_complexity Low_complexity 1 40 0 1252 187 37 10 chr12 91558277 91558571 -52723918 - L1MA7 LINE L1 -2 6289 5988 295 271 14 0 chr12 91559541 91559661 -52722828 + L1ME4a LINE L1 5599 5720 -401 332 287 0 62 chr12 91559947 91560076 -52722413 + L1ME4a LINE L1 5981 6101 -20 290 318 45 0 chr12 91560366 91560476 -52722013 - L2 LINE L2 -4 3309 3195 1822 227 30 22 chr12 91560656 91561118 -52721371 + MLT1C LTR MaLR 1 466 -1 2472 62 3 0 chr12 91561476 91561780 -52720709 - AluY SINE Alu -6 305 1 209 213 0 0 chr12 91562341 91562388 -52720101 + (TAA)n Simple_repeat Simple_repeat 2 48 0 2547 62 0 0 chr12 91562438 91562744 -52719745 + AluY SINE Alu 1 306 -5 577 68 11 11 chr12 91562976 91563064 -52719425 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 267 304 20 101 chr12 91563519 91563667 -52718822 + MER91A DNA MER1_type 18 153 -43 1706 135 44 66 chr12 91565362 91565681 -52716808 - AluSx SINE Alu 0 312 1 1688 151 50 56 chr12 91566707 91567084 -52715405 - THE1C LTR MaLR 0 375 1 5348 152 8 23 chr12 91567084 91567955 -52714534 - THE1C-int LTR MaLR 0 1580 723 2110 164 9 30 chr12 91567958 91568319 -52714170 + L1MA9 LINE L1 5889 6242 -70 2240 92 0 0 chr12 91568319 91568630 -52713859 + AluY SINE Alu 1 311 0 2110 164 9 30 chr12 91568630 91568700 -52713789 + L1MA9 LINE L1 6242 6312 0 200 183 67 17 chr12 91569038 91569098 -52713391 + GA-rich Low_complexity Low_complexity 4 66 0 435 19 0 0 chr12 91569345 91569397 -52713092 + (CA)n Simple_repeat Simple_repeat 2 53 0 30 0 0 0 chr12 91569769 91569799 -52712690 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr12 91571125 91571172 -52711317 + AT_rich Low_complexity Low_complexity 1 47 0 29 84 0 0 chr12 91571610 91571681 -52710808 + AT_rich Low_complexity Low_complexity 1 71 0 795 229 113 34 chr12 91572456 91572749 -52709740 - L1ME2 LINE L1 -9 6155 5840 253 361 0 0 chr12 91572749 91572846 -52709643 + LTR48B LTR ERV1 1 97 -547 * 1340 242 38 42 chr12 91572824 91573274 -52709215 + MER39 LTR ERV1 260 707 0 1255 240 153 14 chr12 91573274 91573778 -52708711 - L1ME2 LINE L1 -321 5843 5270 1093 124 0 0 chr12 91573796 91573949 -52708540 - Tigger3b DNA MER2_type -1 1230 1078 826 257 6 6 chr12 91573950 91574129 -52708360 + LTR28 LTR ERV1 1 179 -841 544 204 30 87 chr12 91574163 91574415 -52708074 + MER61D LTR ERV1 340 497 -4 3576 111 26 10 chr12 91574674 91575249 -52707240 + LTR10C LTR ERV1 1 505 0 5601 135 54 15 chr12 91575249 91575954 -52706535 - Tigger3b DNA MER2_type -1952 1076 317 2433 81 0 3 chr12 91575954 91576261 -52706228 - AluY SINE Alu -5 306 1 5601 135 54 15 chr12 91576261 91576591 -52705898 - Tigger3b DNA MER2_type -2711 317 1 1534 200 10 13 chr12 91576602 91576902 -52705587 - AluJb SINE Alu -13 299 1 1173 236 47 60 chr12 91576931 91577418 -52705071 - L1ME2 LINE L1 -868 5278 4798 1708 290 89 25 chr12 91577435 91578547 -52703942 - L1ME2 LINE L1 -1518 4628 3446 1026 247 75 64 chr12 91578947 91579416 -52703073 + L1MD2 LINE L1 5885 6358 -1 328 353 0 29 chr12 91579693 91579829 -52702660 - MLT1K LTR MaLR -431 157 26 2371 53 0 13 chr12 91579915 91580216 -52702273 + AluY SINE Alu 2 298 -13 222 156 0 0 chr12 91580216 91580248 -52702241 - L3 LINE CR1 -260 1317 1286 350 329 112 40 chr12 91580386 91580787 -52701702 - L3 LINE CR1 -506 1071 642 709 274 64 1 chr12 91580887 91581111 -52701378 - MIR SINE MIR -25 237 8 189 309 0 36 chr12 91581103 91581187 -52701302 - L3 LINE CR1 -1085 492 412 * 1496 223 3 10 chr12 91583120 91583434 -52699055 + AluJo SINE Alu 1 312 0 1407 291 87 45 chr12 91583987 91584755 -52697734 - L2 LINE L2 -8 3305 2493 612 220 58 0 chr12 91585127 91585318 -52697171 - MER69 DNA AcHobo -190 2336 2135 2654 263 64 59 chr12 91585333 91586407 -52696082 - MER69 DNA AcHobo -1261 1265 186 563 250 72 0 chr12 91586452 91586604 -52695885 - MER69 DNA AcHobo -391 835 673 255 313 70 9 chr12 91586595 91586710 -52695779 - MER69 DNA AcHobo -728 498 377 * 1760 179 28 0 chr12 91587309 91587599 -52694890 + AluJo SINE Alu 2 299 -13 349 321 189 17 chr12 91587629 91587978 -52694511 - L1M4 LINE L1 -1663 4483 4075 250 184 26 0 chr12 91589994 91590070 -52692419 + (TA)n Simple_repeat Simple_repeat 2 79 0 317 300 194 11 chr12 91590130 91590310 -52692179 + MIR SINE MIR 48 260 -2 880 185 64 6 chr12 91590686 91590859 -52691630 - MER20 DNA MER1_type 0 219 37 297 360 64 0 chr12 91591092 91591264 -52691225 - MIR SINE MIR -1 261 79 390 322 120 0 chr12 91592424 91592607 -52689882 - MIR SINE MIR -2 260 56 513 248 45 69 chr12 91592798 91593000 -52689489 - MIR SINE MIR -30 232 36 282 253 11 21 chr12 91593106 91593201 -52689288 + L2 LINE L2 1618 1711 -1603 38 39 0 0 chr12 91593201 91593253 -52689236 + AT_rich Low_complexity Low_complexity 1 52 0 530 351 36 24 chr12 91593260 91593511 -52688978 + L2 LINE L2 1709 1962 -1352 2557 56 0 0 chr12 91593515 91593819 -52688670 - AluY SINE Alu -7 304 1 1071 161 0 32 chr12 91593857 91594074 -52688415 + L1MA9 LINE L1 6103 6312 0 263 258 15 15 chr12 91594116 91594182 -52688307 + L2 LINE L2 3196 3261 -52 22 56 0 0 chr12 91594458 91594494 -52687995 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr12 91594500 91594521 -52687968 + (T)n Simple_repeat Simple_repeat 1 21 0 1600 299 91 44 chr12 91594521 91595768 -52686721 + L2 LINE L2 2005 3312 -1 3879 243 89 18 chr12 91595980 91596165 -52686324 - Charlie1a DNA MER1_type -1438 1323 1153 1827 130 34 62 chr12 91596165 91596549 -52685940 + THE1C LTR MaLR 1 373 -2 3879 243 89 18 chr12 91596549 91597597 -52684892 - Charlie1a DNA MER1_type -1608 1153 2 319 264 0 47 chr12 91597950 91598056 -52684433 + L1MC4 LINE L1 6603 6703 -1339 1105 193 71 17 chr12 91598056 91598295 -52684194 + MER21A LTR ERV1 13 264 -667 185 350 98 22 chr12 91598504 91598687 -52683802 + MIR SINE MIR 20 216 -46 183 188 29 29 chr12 91598733 91598802 -52683687 + (TTATA)n Simple_repeat Simple_repeat 5 73 0 2306 133 14 3 chr12 91599080 91599440 -52683049 + THE1B LTR MaLR 1 364 0 1797 204 32 32 chr12 91599679 91600086 -52682403 - MSTB LTR MaLR -19 407 1 326 321 0 0 chr12 91600087 91600193 -52682296 + L1ME1 LINE L1 6006 6111 -55 1271 236 34 0 chr12 91600365 91600658 -52681831 - MLT1B LTR MaLR 0 390 88 1597 160 66 34 chr12 91600658 91601008 -52681481 + MER4B LTR ERV1 1 361 -249 7064 116 13 9 chr12 91601384 91602410 -52680079 + HSMAR1 DNA Mariner 1 1030 -257 764 93 17 8 chr12 91602410 91602578 -52679911 - AluSg/x SINE Alu 0 312 175 1888 102 8 4 chr12 91602578 91602844 -52679645 + HSMAR1 DNA Mariner 1020 1286 -1 622 288 68 10 chr12 91603149 91603354 -52679135 - MER20 DNA MER1_type -1 218 2 217 311 76 8 chr12 91603594 91603713 -52678776 + L3 LINE CR1 1282 1408 -169 380 346 46 26 chr12 91604286 91604537 -52677952 - MIR SINE MIR -3 259 1 201 368 11 11 chr12 91604537 91604613 -52677876 - L2 LINE L2 -554 2760 2685 1082 329 50 17 chr12 91605912 91606377 -52676112 + LTR16C LTR ERVL 12 491 0 431 228 190 17 chr12 91606716 91606899 -52675590 + MIR SINE MIR 38 249 -13 2578 240 97 39 chr12 91607553 91608387 -52674102 - L1M4c LINE L1 -3423 3221 2437 1605 235 28 0 chr12 91608387 91608740 -52673749 - MLT1A1 LTR MaLR -2 363 1 2578 240 97 39 chr12 91608740 91610070 -52672419 - L1M4c LINE L1 -4207 2437 829 2041 150 42 28 chr12 91610071 91610430 -52672059 - THE1B LTR MaLR 0 364 1 10411 119 13 3 chr12 91610430 91611993 -52670496 - THE1B-int LTR MaLR 0 1580 3 2003 160 42 22 chr12 91611995 91612352 -52670137 - THE1B LTR MaLR 0 364 1 687 304 20 0 chr12 91612379 91612583 -52669906 - L1M4c LINE L1 -5737 805 598 790 207 40 59 chr12 91612588 91612829 -52669660 - MLT1A1 LTR MaLR -118 256 8 911 254 20 44 chr12 91612836 91613131 -52669358 - L1M4c LINE L1 -6194 348 61 443 294 174 23 chr12 91613690 91613908 -52668581 + MIR SINE MIR 12 262 0 489 17 0 0 chr12 91615127 91615185 -52667304 + (CA)n Simple_repeat Simple_repeat 2 59 0 344 308 35 21 chr12 91615190 91615333 -52667156 - MLT1E LTR MaLR -13 536 392 265 267 25 0 chr12 91616159 91616279 -52666210 + (TA)n Simple_repeat Simple_repeat 1 123 0 514 299 93 22 chr12 91616318 91616586 -52665903 - HsTC2 DNA Tc2 -1121 777 491 342 0 0 0 chr12 91616774 91616812 -52665677 + (CA)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr12 91617041 91617064 -52665425 + AT_rich Low_complexity Low_complexity 1 23 0 2000 128 0 0 chr12 91617727 91618051 -52664438 - AluSx SINE Alu 0 324 1 558 307 99 18 chr12 91618667 91619009 -52663480 + HsTC2 DNA Tc2 491 860 -1038 1233 171 5 14 chr12 91619538 91619754 -52662735 - MER20 DNA MER1_type -4 215 2 249 286 71 0 chr12 91619877 91619961 -52662528 + MIR SINE MIR 114 203 -59 185 345 0 0 chr12 91620528 91620583 -52661906 - L2 LINE L2 -665 2649 2595 210 233 0 0 chr12 91620748 91620808 -52661681 + (TA)n Simple_repeat Simple_repeat 1 60 0 25 51 0 0 chr12 91621505 91621544 -52660945 + AT_rich Low_complexity Low_complexity 1 39 0 34 55 0 0 chr12 91621620 91621675 -52660814 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr12 91621730 91621752 -52660737 + AT_rich Low_complexity Low_complexity 1 22 0 2031 82 0 0 chr12 91621755 91622024 -52660465 - AluY SINE Alu -18 293 25 719 268 48 125 chr12 91622026 91622459 -52660030 - MLT1E LTR MaLR -193 400 1 182 37 37 0 chr12 91623281 91623308 -52659181 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 1843 162 7 7 chr12 91624119 91624428 -52658061 + AluSx SINE Alu 1 309 -3 762 239 0 53 chr12 91624730 91624918 -52657571 - MLT2D LTR ERVL -8 406 229 1286 240 33 36 chr12 91624931 91625294 -52657195 - MLT1A2 LTR MaLR -11 363 2 943 258 65 14 chr12 91625336 91625611 -52656878 - MLT2D LTR ERVL -125 289 1 31 0 0 0 chr12 91626223 91626254 -52656235 + AT_rich Low_complexity Low_complexity 1 31 0 3464 166 7 23 chr12 91626282 91626450 -52656039 - LTR26 LTR ERV1 0 603 434 1534 176 157 83 chr12 91626450 91626966 -52655523 + MLT2B3 LTR ERVL 1 554 0 3464 166 7 23 chr12 91626966 91627410 -52655079 - LTR26 LTR ERV1 -169 434 1 1768 219 72 16 chr12 91627487 91627929 -52654560 - MLT1C LTR MaLR 0 467 1 22 0 0 0 chr12 91628365 91628387 -52654102 + AT_rich Low_complexity Low_complexity 1 22 0 40 59 0 0 chr12 91628551 91628619 -52653870 + AT_rich Low_complexity Low_complexity 1 68 0 617 318 123 17 chr12 91628754 91629103 -52653386 - MLT1J LTR MaLR -55 456 71 343 213 184 21 chr12 91629524 91629665 -52652824 + L1ME4a LINE L1 5793 5956 -165 265 370 44 0 chr12 91630651 91630786 -52651703 - MIR SINE MIR -76 186 46 319 313 189 7 chr12 91631428 91631709 -52650780 + HAL1 LINE L1 1315 1646 -861 256 187 116 143 chr12 91631722 91631808 -52650681 - LTR37B LTR ERV1 -2 466 379 722 211 0 0 chr12 91631808 91631941 -52650548 + FLAM_C SINE Alu 1 133 0 256 187 116 143 chr12 91631941 91631974 -52650515 - LTR37B LTR ERV1 -89 379 347 420 20 0 0 chr12 91631974 91632023 -52650466 + (TA)n Simple_repeat Simple_repeat 1 49 0 256 187 116 143 chr12 91632023 91632219 -52650270 - LTR37B LTR ERV1 -121 347 112 226 289 31 21 chr12 91632299 91632396 -52650093 - LTR37B LTR ERV1 -365 103 6 770 332 69 69 chr12 91632424 91633250 -52649239 + HAL1 LINE L1 1682 2507 0 24 0 0 0 chr12 91634245 91634269 -52648220 + AT_rich Low_complexity Low_complexity 1 24 0 2143 139 8 32 chr12 91635431 91635804 -52646685 - THE1B LTR MaLR 0 364 1 3968 131 20 29 chr12 91635809 91636460 -52646029 - THE1B-int LTR MaLR -5 1575 931 6229 105 32 52 chr12 91636466 91636768 -52645721 + L1MA1 LINE L1 5235 5542 -760 2111 115 6 16 chr12 91636768 91637080 -52645409 + AluSc SINE Alu 1 309 0 6229 105 32 52 chr12 91637080 91637829 -52644660 + L1MA1 LINE L1 5542 6266 -36 189 0 0 0 chr12 91637829 91637850 -52644639 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 6229 105 32 52 chr12 91637850 91637887 -52644602 + L1MA1 LINE L1 6266 6302 0 363 349 7 27 chr12 91638015 91638161 -52644328 - MER5B DNA MER1_type 0 178 36 216 356 87 10 chr12 91638150 91638254 -52644235 + L2 LINE L2 3201 3312 -1 * 23 0 0 0 chr12 91638723 91638746 -52643743 + AT_rich Low_complexity Low_complexity 1 23 0 553 309 33 0 chr12 91639132 91639284 -52643205 + MER21B LTR ERV1 581 737 -126 284 48 24 0 chr12 91639721 91639763 -52642726 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1237 192 102 0 chr12 91639766 91640021 -52642468 - AluJb SINE Alu -31 281 1 23 0 0 0 chr12 91641047 91641070 -52641419 + AT_rich Low_complexity Low_complexity 1 23 0 338 340 14 21 chr12 91641882 91642026 -52640463 + MIR SINE MIR 94 236 -26 22 70 0 0 chr12 91642216 91642259 -52640230 + AT_rich Low_complexity Low_complexity 1 43 0 775 262 60 55 chr12 91642529 91642914 -52639575 + L1MEc LINE L1 1890 2276 -4120 264 279 11 6 chr12 91642946 91643125 -52639364 + (TA)n Simple_repeat Simple_repeat 1 180 0 34 55 0 0 chr12 91643879 91643934 -52638555 + AT_rich Low_complexity Low_complexity 1 55 0 208 372 138 21 chr12 91644084 91644229 -52638260 + MIR3 SINE MIR 16 177 -31 2495 174 155 110 chr12 91644781 91645094 -52637395 + L1MC3 LINE L1 6767 7064 -721 237 297 11 11 chr12 91645094 91645185 -52637304 + MLT1F1 LTR MaLR 35 125 -442 2495 174 155 110 chr12 91645185 91645756 -52636733 + L1MC3 LINE L1 7064 7785 0 22 80 0 0 chr12 91647041 91647091 -52635398 + AT_rich Low_complexity Low_complexity 1 50 0 2053 148 122 8 chr12 91647812 91648196 -52634293 + MSTA LTR MaLR 1 428 0 8559 185 21 7 chr12 91648196 91649647 -52632842 + MSTA-int LTR MaLR 1 1479 -172 207 88 0 0 chr12 91649647 91649681 -52632808 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8559 185 21 7 chr12 91649681 91649857 -52632632 + MSTA-int LTR MaLR 1479 1651 0 2050 136 123 28 chr12 91649857 91650248 -52632241 + MSTA LTR MaLR 1 428 0 2224 107 0 0 chr12 91651353 91651651 -52630838 - AluSg SINE Alu -12 298 1 1335 183 70 36 chr12 91652668 91652969 -52629520 + AluJo SINE Alu 1 311 -1 1067 117 6 0 chr12 91652972 91653143 -52629346 + (GGAGA)n Simple_repeat Simple_repeat 3 174 0 339 266 93 72 chr12 91653157 91653394 -52629095 - L2 LINE L2 -930 2384 2143 2240 93 7 0 chr12 91655580 91655870 -52626619 + AluSc SINE Alu 1 292 -17 314 352 28 0 chr12 91656065 91656210 -52626279 - MLT1J LTR MaLR -50 461 313 24 0 0 0 chr12 91656312 91656336 -52626153 + AT_rich Low_complexity Low_complexity 1 24 0 2123 92 0 0 chr12 91656336 91656643 -52625846 - AluY SINE Alu 0 307 1 586 62 0 0 chr12 91656760 91656840 -52625649 + L1PA5 LINE L1 6071 6150 -4 223 399 51 6 chr12 91656886 91657064 -52625425 - MER5A DNA MER1_type -1 188 3 646 274 6 6 chr12 91657649 91657813 -52624676 - MER63A DNA MER1_type -1 209 46 265 262 8 8 chr12 91658199 91658321 -52624168 + GA-rich Low_complexity Low_complexity 1 122 0 1239 175 0 5 chr12 91658400 91658606 -52623883 + AluSx SINE Alu 16 220 -92 28 0 0 0 chr12 91658703 91658731 -52623758 + AT_rich Low_complexity Low_complexity 1 28 0 336 350 89 11 chr12 91660063 91660243 -52622246 - MLT1K LTR MaLR -266 322 129 2320 83 0 0 chr12 91660419 91660719 -52621770 - AluSx SINE Alu -12 300 1 239 206 32 48 chr12 91660818 91660881 -52621608 + MLT1K LTR MaLR 525 586 -2 544 304 31 58 chr12 91662964 91663224 -52619265 + MIR SINE MIR 10 262 0 194 323 52 83 chr12 91664189 91664418 -52618071 + L2 LINE L2 2756 2977 -337 311 185 12 49 chr12 91664929 91665010 -52617479 + MLT1K LTR MaLR 509 586 -2 21 36 0 0 chr12 91665307 91665335 -52617154 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 91665640 91665662 -52616827 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr12 91666024 91666067 -52616422 + AT_rich Low_complexity Low_complexity 1 43 0 2009 122 47 39 chr12 91666071 91666432 -52616057 + THE1B LTR MaLR 1 364 0 944 308 131 52 chr12 91666502 91666797 -52615692 + L2 LINE L2 2467 2737 -576 2370 76 7 0 chr12 91666797 91667101 -52615388 - AluSc SINE Alu -3 306 1 944 308 131 52 chr12 91667101 91667580 -52614909 + L2 LINE L2 2737 3313 0 880 275 0 18 chr12 91667791 91668013 -52614476 + MLT1E LTR MaLR 376 593 0 2361 60 7 3 chr12 91668211 91668512 -52613977 + AluY SINE Alu 1 302 -9 24 0 0 0 chr12 91668894 91668918 -52613571 + AT_rich Low_complexity Low_complexity 1 24 0 354 102 17 0 chr12 91670135 91670194 -52612295 - MER93b LTR ERV1 0 373 314 * 378 175 0 0 chr12 91670191 91670254 -52612235 - MER93a LTR ERV1 -339 63 1 201 94 0 0 chr12 91670417 91670449 -52612040 + (TG)n Simple_repeat Simple_repeat 1 32 0 23 33 0 0 chr12 91670742 91670772 -52611717 + AT_rich Low_complexity Low_complexity 1 30 0 452 169 0 0 chr12 91671060 91671131 -52611358 - MER41D LTR ERV1 0 557 487 14601 114 12 37 chr12 91722724 91723061 -52559428 - L1PA8A LINE L1 -313 5818 5474 2430 63 3 22 chr12 91723061 91723378 -52559111 - AluY SINE Alu 0 311 1 14601 114 12 37 chr12 91723378 91726056 -52556433 - L1PA8A LINE L1 -657 5474 2879 1152 319 109 35 chr12 91726221 91726945 -52555544 + L2 LINE L2 2140 2917 -397 303 323 54 7 chr12 91726979 91727174 -52555315 + MLT1I LTR MaLR 16 257 -272 200 244 191 61 chr12 91728010 91728141 -52554348 - MIR SINE MIR -15 247 100 218 348 45 0 chr12 91728711 91728800 -52553689 - MIR3 SINE MIR -3 205 113 265 105 0 0 chr12 91729237 91729275 -52553214 - Charlie8 DNA MER1_type -9 2408 2371 8652 167 13 23 chr12 91729369 91732316 -52550173 + L1P3 LINE L1 2 2979 -3482 2376 82 7 0 chr12 91732699 91733003 -52549486 + AluSc SINE Alu 2 307 -2 211 288 12 38 chr12 91735214 91735294 -52547195 + G-rich Low_complexity Low_complexity 1 78 0 23 33 0 0 chr12 91736577 91736607 -52545882 + AT_rich Low_complexity Low_complexity 1 30 0 283 356 23 28 chr12 91738226 91738403 -52544086 + MIR3 SINE MIR 20 195 -13 21 0 0 0 chr12 91738485 91738506 -52543983 + AT_rich Low_complexity Low_complexity 1 21 0 1272 122 83 0 chr12 91738597 91738802 -52543687 - L1PA10 LINE L1 -19 6149 5928 24 0 0 0 chr12 91739093 91739117 -52543372 + AT_rich Low_complexity Low_complexity 1 24 0 289 222 42 0 chr12 91739315 91739390 -52543099 - MLT1J1 LTR MaLR -23 418 311 369 244 48 0 chr12 91740113 91740281 -52542208 + (TA)n Simple_repeat Simple_repeat 2 177 0 267 188 87 0 chr12 91740409 91740558 -52541931 + (TA)n Simple_repeat Simple_repeat 2 163 0 27 62 0 0 chr12 91740564 91740612 -52541877 + AT_rich Low_complexity Low_complexity 1 48 0 211 181 43 0 chr12 91740612 91740728 -52541761 + (TA)n Simple_repeat Simple_repeat 1 121 0 605 88 0 0 chr12 91740741 91740821 -52541668 - MADE1 DNA Mariner 0 80 1 30 0 0 0 chr12 91740876 91740906 -52541583 + AT_rich Low_complexity Low_complexity 1 30 0 2313 70 0 0 chr12 91741479 91741777 -52540712 + AluY SINE Alu 1 298 -13 21 36 0 0 chr12 91742621 91742649 -52539840 + AT_rich Low_complexity Low_complexity 1 28 0 200 339 64 18 chr12 91742795 91742904 -52539585 + MIR3 SINE MIR 10 123 -85 366 301 223 5 chr12 91744377 91744530 -52537959 + MIR SINE MIR 10 128 -134 222 37 0 0 chr12 91744530 91744557 -52537932 + (TA)n Simple_repeat Simple_repeat 1 27 0 366 301 223 5 chr12 91744557 91744609 -52537880 + MIR SINE MIR 128 260 -2 239 331 209 14 chr12 91744664 91744803 -52537686 + L2 LINE L2 121 286 -3028 1448 335 72 15 chr12 91744986 91745772 -52536717 + L2 LINE L2 721 1551 -1763 489 316 138 4 chr12 91745774 91745999 -52536490 + L2 LINE L2 2398 2652 -662 2482 163 22 20 chr12 91746061 91746558 -52535931 - L1MA4 LINE L1 -5 6295 5798 383 172 82 15 chr12 91746569 91746671 -52535818 - AluSg/x SINE Alu -7 293 204 2998 214 69 44 chr12 91746740 91747570 -52534919 + L1MEc LINE L1 1129 1961 -4435 2095 116 0 0 chr12 91747570 91747896 -52534593 - AluY SINE Alu 0 311 5 2998 214 69 44 chr12 91747896 91748418 -52534071 + L1MEc LINE L1 1961 2469 -3927 1686 164 13 16 chr12 91748418 91748729 -52533760 + MER47A DNA MER2_type 56 365 -1 26 0 0 0 chr12 91749069 91749095 -52533394 + AT_rich Low_complexity Low_complexity 1 26 0 302 254 59 25 chr12 91749139 91749257 -52533232 + L1MEc LINE L1 2392 2513 -3702 1212 241 7 0 chr12 91749279 91749573 -52532916 + L1MEc LINE L1 3898 4193 -2022 331 267 67 25 chr12 91749595 91749715 -52532774 - MIR SINE MIR -82 180 56 2840 10 0 0 chr12 91749716 91750028 -52532461 + AluYb8 SINE Alu 1 312 -6 29 28 0 0 chr12 91750527 91750563 -52531926 + AT_rich Low_complexity Low_complexity 1 36 0 2942 160 20 46 chr12 91750748 91751355 -52531134 + L1PB4 LINE L1 5565 6155 -1 386 338 7 36 chr12 91751429 91751568 -52530921 - MER91A DNA MER1_type -42 154 20 2195 113 0 0 chr12 91751774 91752074 -52530415 + AluSx SINE Alu 3 302 -10 232 348 83 0 chr12 91752777 91752849 -52529640 + MER5A DNA MER1_type 33 121 -68 21 0 0 0 chr12 91752853 91752874 -52529615 + AT_rich Low_complexity Low_complexity 1 21 0 1527 193 0 33 chr12 91752875 91753175 -52529314 - AluJb SINE Alu -20 292 3 3045 189 30 13 chr12 91753323 91753926 -52528563 - MER39B LTR ERV1 0 653 41 6640 134 11 15 chr12 91753940 91755303 -52527186 - L1MA3 LINE L1 -3 6302 4942 294 143 20 0 chr12 91755454 91755503 -52526986 - L1ME LINE L1 -520 5601 5552 545 297 128 5 chr12 91755638 91755833 -52526656 + MIR SINE MIR 41 259 -3 5349 151 30 28 chr12 91756095 91757316 -52525173 - L1PA13 LINE L1 -3 6160 4950 4022 173 21 24 chr12 91757326 91758091 -52524398 - L1MC1 LINE L1 -104 6229 5467 1580 198 27 3 chr12 91758332 91758625 -52523864 + AluJb SINE Alu 1 300 -12 380 173 86 12 chr12 91759047 91759128 -52523361 + L2 LINE L2 3186 3272 0 2272 110 0 0 chr12 91759251 91759561 -52522928 + AluSx SINE Alu 1 310 -2 204 220 40 0 chr12 91760794 91760844 -52521645 - L2 LINE L2 -1 3312 3261 535 270 50 40 chr12 91761033 91761233 -52521256 + MLT1J LTR MaLR 291 492 -19 228 305 73 13 chr12 91761629 91761762 -52520727 + L1M4c LINE L1 1541 1834 -909 686 185 40 13 chr12 91762743 91762894 -52519595 + L1MB7 LINE L1 5631 5785 -399 1090 235 29 7 chr12 91762932 91763209 -52519280 + L1MB7 LINE L1 5902 6184 0 406 259 87 63 chr12 91763243 91763324 -52519165 + L1M4c LINE L1 2713 2791 -3591 1823 224 3 13 chr12 91763324 91763716 -52518773 + MLT1B LTR MaLR 1 388 -2 406 259 87 63 chr12 91763716 91764059 -52518430 + L1M4c LINE L1 2791 3147 -3235 1136 225 67 0 chr12 91764173 91764457 -52518032 - AluJo SINE Alu -3 309 7 2818 108 24 90 chr12 91764666 91765213 -52517276 - L1PB1 LINE L1 -1 6150 5640 258 271 0 14 chr12 91765241 91765311 -52517178 + L2 LINE L2 2472 2540 -774 25 31 0 0 chr12 91765332 91765364 -52517125 + AT_rich Low_complexity Low_complexity 1 32 0 2361 118 0 50 chr12 91765364 91765786 -52516703 - L1PB1 LINE L1 -2 6149 5749 7215 174 4 63 chr12 91765799 91768132 -52514357 - L1P5 LINE L1 -356 6511 4327 2516 139 15 26 chr12 91768116 91768576 -52513913 - L1P5 LINE L1 -5088 1775 1321 * 2671 209 161 3 chr12 91768600 91769335 -52513154 - L1P5 LINE L1 -5710 1153 303 433 156 111 0 chr12 91769337 91769427 -52513062 + L1MA4 LINE L1 6194 6293 -7 6396 74 4 46 chr12 91769518 91770718 -52511771 + L1PA8 LINE L1 4997 6157 -15 3665 115 32 10 chr12 91770839 91771438 -52511051 - L1MA3 LINE L1 -8 6297 5686 776 176 19 19 chr12 91771444 91771603 -52510886 + MER50 LTR ERV1 10 168 -566 2491 219 56 13 chr12 91771608 91772211 -52510278 + MER50 LTR ERV1 106 734 0 5177 185 32 14 chr12 91772241 91773745 -52508744 - L1MA3 LINE L1 -623 5682 4151 1760 111 17 14 chr12 91773746 91773901 -52508588 + L1M1 LINE L1 2568 2726 -4839 2352 75 14 0 chr12 91773901 91774196 -52508293 + AluSp SINE Alu 1 299 -14 1760 111 17 14 chr12 91774196 91774328 -52508161 + L1M1 LINE L1 2726 2856 -4709 422 322 121 15 chr12 91774654 91774853 -52507636 - L2 LINE L2 -561 2753 2534 33 56 0 0 chr12 91776025 91776079 -52506410 + AT_rich Low_complexity Low_complexity 1 54 0 797 249 36 20 chr12 91776213 91776466 -52506023 - MIR SINE MIR -1 261 5 411 21 0 0 chr12 91776909 91776957 -52505532 + (ATG)n Simple_repeat Simple_repeat 1 48 0 278 240 0 40 chr12 91777467 91777542 -52504947 - L2 LINE L2 0 3313 3242 21 0 0 0 chr12 91777721 91777742 -52504747 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 91779512 91779540 -52502949 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 91780069 91780091 -52502398 + AT_rich Low_complexity Low_complexity 1 22 0 29 70 0 0 chr12 91780988 91781045 -52501444 + AT_rich Low_complexity Low_complexity 1 57 0 806 174 25 116 chr12 91781475 91781716 -52500773 + MER20 DNA MER1_type 1 219 0 2780 97 0 5 chr12 91782682 91783085 -52499404 - L1PA13 LINE L1 -506 5657 5257 3181 89 27 10 chr12 91783085 91783564 -52498925 + L1PA13 LINE L1 5674 6163 0 26 0 0 0 chr12 91784781 91784807 -52497682 + AT_rich Low_complexity Low_complexity 1 26 0 676 249 54 11 chr12 91785407 91785592 -52496897 - MIR SINE MIR 0 262 70 2365 66 7 0 chr12 91785923 91786224 -52496265 + AluY SINE Alu 2 304 -7 711 168 64 0 chr12 91786457 91786582 -52495907 - FLAM_C SINE Alu 0 133 1 537 200 100 21 chr12 91786722 91786862 -52495627 - MIR SINE MIR -7 255 105 274 345 109 0 chr12 91786871 91786990 -52495499 + MIR SINE MIR 112 243 -19 1392 213 56 19 chr12 91787289 91787613 -52494876 + MER58B DNA MER1_type 6 341 0 400 232 33 46 chr12 91787613 91787747 -52494742 + MER103 DNA DNA 34 165 -1 2111 101 37 0 chr12 91788107 91788405 -52494084 + AluSc SINE Alu 1 309 0 213 265 0 0 chr12 91788881 91788930 -52493559 + (TG)n Simple_repeat Simple_repeat 2 50 0 2431 63 0 0 chr12 91790162 91790462 -52492027 + AluY SINE Alu 1 300 -11 654 264 131 41 chr12 91790750 91791188 -52491301 + MLT1H LTR MaLR 7 549 0 266 293 67 112 chr12 91791189 91791664 -52490825 + L2 LINE L2 2119 2572 -742 21 0 0 0 chr12 91791788 91791809 -52490680 + AT_rich Low_complexity Low_complexity 1 21 0 226 329 109 15 chr12 91792061 91792198 -52490291 + L2 LINE L2 2909 3058 -214 1321 139 0 0 chr12 91792243 91792452 -52490037 - AluSc SINE Alu 0 301 93 888 234 37 9 chr12 91792671 91792889 -52489600 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr12 91792925 91792946 -52489543 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr12 91793027 91793059 -52489430 + (CA)n Simple_repeat Simple_repeat 2 33 0 2334 75 14 0 chr12 91793691 91793986 -52488503 - AluY SINE Alu -12 299 1 204 278 69 14 chr12 91794037 91794109 -52488380 + L2 LINE L2 2705 2780 -534 35 24 0 0 chr12 91794090 91794132 -52488357 + AT_rich Low_complexity Low_complexity 1 42 0 * 755 358 127 14 chr12 91794328 91794976 -52487513 + L2 LINE L2 2257 2977 -337 403 326 21 32 chr12 91795067 91795254 -52487235 + L2 LINE L2 3117 3301 -12 204 219 0 0 chr12 91795404 91795445 -52487044 + (TATG)n Simple_repeat Simple_repeat 3 43 0 1339 117 39 22 chr12 91795526 91795757 -52486732 + L1MA3 LINE L1 6071 6305 0 283 247 227 0 chr12 91797705 91797802 -52484687 - L2 LINE L2 -1 3312 3194 269 310 30 20 chr12 91800559 91800659 -52481830 - L2 LINE L2 -12 3260 3160 28 0 0 0 chr12 91802515 91802543 -52479946 + AT_rich Low_complexity Low_complexity 1 28 0 233 118 20 0 chr12 91803333 91803384 -52479105 + (CA)n Simple_repeat Simple_repeat 2 53 0 38 39 0 0 chr12 91804987 91805039 -52477450 + AT_rich Low_complexity Low_complexity 1 52 0 316 236 8 8 chr12 91805222 91805349 -52477140 + (TA)n Simple_repeat Simple_repeat 2 128 0 357 113 0 0 chr12 91805823 91805885 -52476604 + L1MA9 LINE L1 6251 6312 0 726 272 24 0 chr12 91806027 91806196 -52476293 - FAM SINE Alu -1 174 2 887 152 25 45 chr12 91806218 91806416 -52476073 + L1MA3 LINE L1 6096 6289 -16 227 268 0 14 chr12 91806574 91806645 -52475844 + L1ME LINE L1 5548 5617 -504 1030 233 42 85 chr12 91806803 91807283 -52475206 + LTR37B LTR ERV1 8 466 -2 1630 199 7 7 chr12 91807671 91807973 -52474516 - AluJb SINE Alu -10 302 1 544 256 18 30 chr12 91808287 91808455 -52474034 + MIR SINE MIR 2 167 -95 180 253 301 20 chr12 91809134 91809280 -52473209 + L3b LINE CR1 1396 1582 -1 23 54 0 0 chr12 91809387 91809424 -52473065 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr12 91809911 91809941 -52472548 + AT_rich Low_complexity Low_complexity 1 30 0 1330 210 59 61 chr12 91810131 91810522 -52471967 + MLT1B LTR MaLR 1 390 0 7694 194 65 32 chr12 91810810 91812509 -52469980 + MER52A LTR ERV1 1 1755 0 1626 130 4 8 chr12 91812848 91813087 -52469402 - AluSx SINE Alu -74 238 1 1125 222 239 8 chr12 91813146 91813498 -52468991 + MLT1F LTR MaLR 110 542 0 380 260 31 8 chr12 91813856 91813983 -52468506 - MIR SINE MIR -75 187 58 283 312 51 56 chr12 91814259 91814474 -52468015 - Charlie8 DNA MER1_type -2201 216 3 351 278 167 8 chr12 91814724 91814850 -52467639 + MIR SINE MIR 5 150 -112 4223 178 59 33 chr12 91815119 91815973 -52466516 - L1MA8 LINE L1 -3 6288 5457 270 56 0 0 chr12 91815973 91816009 -52466480 + (CA)n Simple_repeat Simple_repeat 2 37 0 4223 178 59 33 chr12 91816009 91816068 -52466421 - L1MA8 LINE L1 -834 5457 5401 2008 113 3 45 chr12 91816068 91816378 -52466111 - AluSp SINE Alu -16 297 1 4223 178 59 33 chr12 91816378 91816516 -52465973 - L1MA8 LINE L1 -890 5401 5268 1772 157 54 38 chr12 91816516 91816885 -52465604 + THE1C LTR MaLR 1 375 0 4223 178 59 33 chr12 91816885 91817268 -52465221 - L1MA8 LINE L1 -1023 5268 4818 6434 187 19 11 chr12 91817287 91819540 -52462949 - L1PA16 LINE L1 -9 6157 3882 724 205 0 0 chr12 91819613 91819764 -52462725 - L1MA8 LINE L1 -1586 4560 4410 1511 177 49 30 chr12 91819767 91820072 -52462417 - Tigger2a DNA MER2_type -122 312 2 404 280 84 17 chr12 91820074 91820370 -52462119 + L1ME2 LINE L1 3115 3430 -2716 2174 238 146 82 chr12 91820684 91821573 -52460916 + L1ME2 LINE L1 3438 4269 -1877 546 202 0 0 chr12 91821573 91821667 -52460822 - FRAM SINE Alu -82 94 1 2174 238 146 82 chr12 91821667 91822391 -52460098 + L1ME2 LINE L1 4269 5253 -893 3798 175 9 31 chr12 91822533 91822988 -52459501 - MER52A LTR ERV1 0 1755 1318 2077 131 42 31 chr12 91822988 91823348 -52459141 + THE1B LTR MaLR 1 364 0 3798 175 9 31 chr12 91823348 91823573 -52458916 - MER52A LTR ERV1 -437 1318 1090 449 139 42 0 chr12 91823572 91823644 -52458845 + MER52A LTR ERV1 1681 1755 0 * 519 219 192 5 chr12 91823676 91823900 -52458589 - L1M4 LINE L1 -772 5374 5109 2205 222 59 19 chr12 91823918 91824517 -52457972 - MER52A LTR ERV1 -675 1080 2 1671 153 4 0 chr12 91824517 91824798 -52457691 + AluJo SINE Alu 27 308 0 1586 263 81 20 chr12 91824799 91825521 -52456968 + L1ME2 LINE L1 5363 6164 0 211 362 90 5 chr12 91825784 91825972 -52456517 - MIR SINE MIR -6 256 53 1983 118 37 17 chr12 91826027 91826324 -52456165 - AluSg SINE Alu -7 303 1 1689 115 122 0 chr12 91826496 91826766 -52455723 + AluY SINE Alu 1 303 -8 1966 121 7 20 chr12 91826773 91827079 -52455410 + AluY SINE Alu 3 304 -7 611 168 17 8 chr12 91827084 91827203 -52455286 - L1PA8A LINE L1 -3 6128 6009 394 91 0 28 chr12 91827304 91827376 -52455113 + L1MCa LINE L1 1627 1802 -4624 495 109 22 76 chr12 91827378 91827470 -52455019 + MER4D LTR ERV1 809 895 -8 455 263 113 38 chr12 91827473 91827659 -52454830 + LTR55 LTR ERV 282 481 -67 2274 163 23 58 chr12 91827699 91828183 -52454306 - MLT1C LTR MaLR 0 467 1 253 324 87 50 chr12 91828229 91828448 -52454041 - L2 LINE L2 -960 2354 2128 239 240 160 0 chr12 91830548 91830648 -52451841 - L1ME LINE L1 -311 5853 5738 828 280 49 56 chr12 91830690 91831205 -52451284 - L1ME LINE L1 -565 5597 5080 1950 159 10 0 chr12 91831205 91831506 -52450983 - AluSx SINE Alu -8 304 1 828 280 49 56 chr12 91831506 91832202 -52450287 - L1ME LINE L1 -1082 5080 4398 282 237 72 92 chr12 91832267 91832419 -52450070 - L1 LINE L1 -804 5342 5194 * 2638 228 39 10 chr12 91832390 91833113 -52449376 - L1 LINE L1 -1193 4953 4210 2128 95 3 16 chr12 91833306 91833611 -52448878 - AluSg SINE Alu -9 301 1 23 0 0 0 chr12 91834161 91834184 -52448305 + AT_rich Low_complexity Low_complexity 1 23 0 49 76 0 0 chr12 91834855 91834960 -52447529 + AT_rich Low_complexity Low_complexity 1 105 0 411 125 0 0 chr12 91835186 91835258 -52447231 + (TGGA)n Simple_repeat Simple_repeat 4 75 0 543 69 0 0 chr12 91835588 91835660 -52446829 + (TGG)n Simple_repeat Simple_repeat 3 74 0 189 0 0 0 chr12 91835660 91835681 -52446808 + (TG)n Simple_repeat Simple_repeat 2 22 0 1851 204 75 46 chr12 91836260 91836369 -52446120 - MLT1D LTR MaLR -7 498 394 2088 136 41 22 chr12 91836369 91836737 -52445752 - THE1C LTR MaLR 0 375 1 1851 204 75 46 chr12 91836737 91837107 -52445382 - MLT1D LTR MaLR -111 394 5 1819 192 96 26 chr12 91839041 91839499 -52442990 + LTR2B LTR ERV1 1 490 0 559 329 29 20 chr12 91839944 91840286 -52442203 + ERVL LTR ERVL 2773 3096 -1900 1885 171 48 8 chr12 91841351 91841702 -52440787 + MSTB1 LTR MaLR 1 365 -67 2548 141 10 0 chr12 91841718 91842123 -52440366 - L1PA13 LINE L1 -4 6159 5751 330 292 80 0 chr12 91843246 91843383 -52439106 - L1 LINE L1 -3310 2836 2689 30 77 0 0 chr12 91845528 91845593 -52436896 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr12 91845664 91845685 -52436804 + AT_rich Low_complexity Low_complexity 1 21 0 544 193 7 44 chr12 91845815 91845950 -52436539 - L1M4 LINE L1 -1400 4746 4617 1187 251 32 36 chr12 91845961 91846486 -52436003 - L1M4 LINE L1 -1712 4434 3912 497 294 29 56 chr12 91846479 91846785 -52435704 - L1M4 LINE L1 -2576 3570 3273 * 247 272 86 0 chr12 91847045 91847126 -52435363 + MIR SINE MIR 175 262 0 306 321 26 83 chr12 91847136 91847329 -52435160 - MIR SINE MIR -69 193 12 476 212 97 145 chr12 91847420 91847436 -52435053 - L1M4 LINE L1 -891 5255 5240 2775 191 34 4 chr12 91847436 91847970 -52434519 - MER44D DNA MER2_type 0 605 1 476 212 97 145 chr12 91847970 91848326 -52434163 - L1M4 LINE L1 -906 5240 4901 378 43 0 0 chr12 91848328 91848375 -52434114 - MADE1 DNA Mariner 0 80 34 676 251 108 8 chr12 91848376 91848707 -52433782 - L1M4 LINE L1 -1313 4833 4444 361 280 70 68 chr12 91848814 91848879 -52433610 + L1M4 LINE L1 3896 3959 -2187 1330 198 75 33 chr12 91848879 91849238 -52433251 - MLT1A2 LTR MaLR 0 374 1 361 280 70 68 chr12 91849238 91849291 -52433198 + L1M4 LINE L1 3959 4010 -2136 2233 115 0 0 chr12 91849291 91849596 -52432893 + AluSx SINE Alu 1 305 -7 361 280 70 68 chr12 91849596 91849919 -52432570 + L1M4 LINE L1 4010 4339 -1807 294 208 93 79 chr12 91849961 91850251 -52432238 + L1MDa LINE L1 1307 1601 -4939 500 288 130 22 chr12 91850272 91850607 -52431882 + MLT1H1 LTR MaLR 3 360 -195 229 204 45 0 chr12 91850629 91850673 -52431816 - Tigger3(Golem) DNA MER2_type 0 3037 2992 2879 122 9 9 chr12 91850673 91851117 -52431372 + MLT2A1 LTR ERVL 1 444 0 2756 84 5 5 chr12 91851117 91851497 -52430992 + HERVL-A1 LTR ERVL 1 380 -5274 * 12005 113 13 24 chr12 91851490 91853212 -52429277 + HERVL-A1 LTR ERVL 3080 4782 -872 2808 79 13 0 chr12 91853211 91853591 -52428898 + HERVL-A1 LTR ERVL 5270 5654 0 * 2681 87 82 12 chr12 91853591 91854006 -52428483 + MLT2A1 LTR ERVL 1 444 0 1129 156 21 5 chr12 91854008 91854200 -52428289 - Tigger3(Golem) DNA MER2_type -45 2984 2790 687 208 0 84 chr12 91854207 91854361 -52428128 - Tigger3(Golem) DNA MER2_type -2888 141 1 416 216 65 13 chr12 91854387 91854524 -52427965 + MLT1H1 LTR MaLR 439 614 -10 1633 273 61 60 chr12 91854543 91855054 -52427435 + L1MDa LINE L1 1677 2186 -4354 1228 239 82 51 chr12 91855054 91855506 -52426983 - MLT1C LTR MaLR -1 466 1 1633 273 61 60 chr12 91855506 91855545 -52426944 + L1MDa LINE L1 2186 2223 -4317 191 59 0 29 chr12 91855545 91855579 -52426910 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 1633 273 61 60 chr12 91855579 91855658 -52426831 + L1MDa LINE L1 2223 2300 -4240 2072 117 7 7 chr12 91855658 91855957 -52426532 + AluSq SINE Alu 1 299 -14 1633 273 61 60 chr12 91855957 91856664 -52425825 + L1MDa LINE L1 2300 2971 -3569 2131 130 3 0 chr12 91856664 91856971 -52425518 + AluSp SINE Alu 1 308 -5 1633 273 61 60 chr12 91856971 91857265 -52425224 + L1MDa LINE L1 2971 3263 -3277 1709 279 18 16 chr12 91857267 91857719 -52424770 + LTR40c LTR ERVL 10 462 -3 1993 126 0 3 chr12 91858349 91858671 -52423818 + AluSx SINE Alu 1 321 0 28 29 0 0 chr12 91858703 91858738 -52423751 + AT_rich Low_complexity Low_complexity 1 35 0 2058 129 0 0 chr12 91858795 91859090 -52423399 + AluSc SINE Alu 1 295 -14 2533 131 36 12 chr12 91859590 91860010 -52422479 - MER57B LTR ERV1 -4 430 1 23 0 0 0 chr12 91860042 91860065 -52422424 + AT_rich Low_complexity Low_complexity 1 23 0 1378 92 301 219 chr12 91860071 91860606 -52421883 + LTR12 LTR ERV1 3 581 -133 3523 149 33 24 chr12 91860878 91861516 -52420973 - LTR9B LTR ERV1 0 644 1 686 319 33 4 chr12 91861660 91861901 -52420588 - L1MCc LINE L1 -5166 1257 1010 1575 218 111 44 chr12 91861910 91862368 -52420121 + LTR40a LTR ERVL 16 504 -15 2052 130 0 3 chr12 91862374 91862674 -52419815 - AluSx SINE Alu -13 299 1 1002 290 135 90 chr12 91862697 91862783 -52419706 - L1MCc LINE L1 -5428 995 914 180 0 0 0 chr12 91862783 91862803 -52419686 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1002 290 135 90 chr12 91862803 91863648 -52418841 - L1MCc LINE L1 -5509 914 22 3863 202 14 25 chr12 91863981 91864945 -52417544 - L1 LINE L1 -1089 5057 4104 2635 184 19 44 chr12 91866031 91866552 -52415937 - MLT2B2 LTR ERVL -7 508 1 393 58 0 0 chr12 91867684 91867736 -52414753 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr12 91868153 91868174 -52414315 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 91868380 91868404 -52414085 + AT_rich Low_complexity Low_complexity 1 24 0 1996 124 20 0 chr12 91868423 91868721 -52413768 - AluSp SINE Alu -9 304 1 184 250 12 75 chr12 91871205 91871285 -52411204 + L2 LINE L2 1671 1745 -1569 264 59 0 0 chr12 91871353 91871387 -52411102 + (A)n Simple_repeat Simple_repeat 1 34 0 22 56 0 0 chr12 91871496 91871532 -52410957 + AT_rich Low_complexity Low_complexity 1 36 0 282 29 0 0 chr12 91871733 91871768 -52410721 + (TG)n Simple_repeat Simple_repeat 2 36 0 1709 168 28 3 chr12 91871775 91872060 -52410429 - AluSx SINE Alu -20 292 1 585 0 0 0 chr12 91872719 91872784 -52409705 + (CAATA)n Simple_repeat Simple_repeat 3 67 0 244 269 0 30 chr12 91873090 91873157 -52409332 + T-rich Low_complexity Low_complexity 1 65 0 207 367 18 18 chr12 91873881 91873990 -52408499 - MIR3 SINE MIR -7 201 93 274 341 41 8 chr12 91874088 91874211 -52408278 + MIR SINE MIR 123 249 -13 23 33 0 0 chr12 91875159 91875189 -52407300 + AT_rich Low_complexity Low_complexity 1 30 0 75 12 0 0 chr12 91876084 91876166 -52406323 + AT_rich Low_complexity Low_complexity 1 82 0 21 57 0 0 chr12 91876447 91876482 -52406007 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr12 91876888 91876932 -52405557 + AT_rich Low_complexity Low_complexity 1 44 0 207 69 0 0 chr12 91877129 91877158 -52405331 + (CA)n Simple_repeat Simple_repeat 2 30 0 709 61 0 0 chr12 91878815 91878913 -52403576 - L1PA4 LINE L1 0 6155 6058 2171 70 3 0 chr12 91879011 91879296 -52403193 + AluY SINE Alu 1 286 -25 4539 24 9 2 chr12 91880306 91880849 -52401640 + L1PA4 LINE L1 5606 6152 -3 394 254 85 36 chr12 91882462 91882627 -52399862 + MER5B DNA MER1_type 3 175 -3 181 385 44 0 chr12 91882811 91882902 -52399587 + MER5A DNA MER1_type 2 96 -93 372 313 92 28 chr12 91883514 91883731 -52398758 + MIR SINE MIR 4 234 -28 25 51 0 0 chr12 91884042 91884081 -52398408 + AT_rich Low_complexity Low_complexity 1 39 0 30 27 0 0 chr12 91884528 91884565 -52397924 + AT_rich Low_complexity Low_complexity 1 37 0 30 59 0 0 chr12 91884894 91884945 -52397544 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr12 91886251 91886273 -52396216 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr12 91887020 91887047 -52395442 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr12 91887339 91887375 -52395114 + AT_rich Low_complexity Low_complexity 1 36 0 391 222 24 0 chr12 91888223 91888349 -52394140 + (CATATA)n Simple_repeat Simple_repeat 6 134 0 290 306 91 8 chr12 91888913 91889034 -52393455 + L3 LINE CR1 376 506 -1071 324 298 107 0 chr12 91889230 91889351 -52393138 - MIR SINE MIR -89 173 40 575 324 129 29 chr12 91889375 91889792 -52392697 + L3 LINE CR1 664 1122 -455 21 0 0 0 chr12 91889888 91889909 -52392580 + AT_rich Low_complexity Low_complexity 1 21 0 412 62 31 0 chr12 91890441 91890505 -52391984 + (TA)n Simple_repeat Simple_repeat 1 66 0 486 0 0 0 chr12 91891574 91891628 -52390861 + (CA)n Simple_repeat Simple_repeat 1 54 0 281 402 8 0 chr12 91892036 91892163 -52390326 + MIR3 SINE MIR 15 142 -66 261 0 0 0 chr12 91942668 91942697 -52339792 + (TG)n Simple_repeat Simple_repeat 2 30 0 1236 246 36 52 chr12 91942711 91943154 -52339335 - ERVL-C2 LTR ERVL -5328 436 1 1257 217 106 80 chr12 91943154 91943195 -52339294 - MLT2C2 LTR ERVL 0 464 426 351 0 0 0 chr12 91943195 91943234 -52339255 + (TG)n Simple_repeat Simple_repeat 1 39 0 1257 217 106 80 chr12 91943234 91943644 -52338845 - MLT2C2 LTR ERVL -38 426 1 3323 98 2 0 chr12 91944306 91944757 -52337732 - HERVL LTR ERVL -1238 4416 3965 217 273 36 0 chr12 91945551 91945661 -52336828 + (TA)n Simple_repeat Simple_repeat 2 115 0 198 222 0 0 chr12 91945800 91945854 -52336635 + CT-rich Low_complexity Low_complexity 4 57 0 201 121 0 0 chr12 91946450 91946483 -52336006 + (CA)n Simple_repeat Simple_repeat 1 33 0 441 320 59 11 chr12 91948011 91948200 -52334289 + MIR3 SINE MIR 1 201 -7 541 372 70 34 chr12 91948810 91949394 -52333095 + L2 LINE L2 2279 2883 -431 507 312 93 32 chr12 91949915 91950162 -52332327 - L2 LINE L2 -5 3308 3047 331 400 56 0 chr12 91950614 91950881 -52331608 - L2 LINE L2 -274 3039 2762 25 0 0 0 chr12 91950974 91950999 -52331490 + AT_rich Low_complexity Low_complexity 1 25 0 2866 89 19 2 chr12 91951029 91951443 -52331046 - L1PA7 LINE L1 -957 5189 4769 6815 66 6 0 chr12 91951443 91952406 -52330083 + L1PA7 LINE L1 5183 6150 -4 1631 187 36 8 chr12 91952407 91952771 -52329718 - L1MA4 LINE L1 -9 6291 5918 2798 91 0 45 chr12 91952871 91953298 -52329191 + HERVL-A1 LTR ERVL 5247 5654 0 2658 89 0 0 chr12 91953298 91953647 -52328842 + MLT2A1 LTR ERVL 1 349 -95 2676 79 3 0 chr12 91953647 91954001 -52328488 + THE1A LTR MaLR 1 355 0 10322 111 36 1 chr12 91954002 91955522 -52326967 + THE1A-int LTR MaLR 3 1576 -4 2039 149 33 30 chr12 91955527 91955889 -52326600 + THE1B LTR MaLR 2 364 0 508 61 219 0 chr12 91956080 91956121 -52326368 - MLT2A1 LTR ERVL 0 444 413 351 0 0 0 chr12 91956121 91956160 -52326329 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 508 61 219 0 chr12 91956160 91956200 -52326289 - MLT2A1 LTR ERVL -31 413 345 2521 114 6 0 chr12 91956200 91956551 -52325938 - THE1A LTR MaLR 0 355 3 2168 110 3 9 chr12 91956553 91956871 -52325618 - THE1A-int LTR MaLR 0 1580 1265 1758 109 15 11 chr12 91956868 91957135 -52325354 - THE1A-int LTR MaLR -1312 268 1 * 2063 146 33 30 chr12 91957135 91957498 -52324991 - THE1B LTR MaLR 0 364 1 239 279 0 15 chr12 91957834 91957902 -52324587 + (TCCA)n Simple_repeat Simple_repeat 2 68 0 642 263 7 0 chr12 91958283 91958435 -52324054 + MIR SINE MIR 74 226 -36 243 0 0 0 chr12 91958436 91958463 -52324026 + (CA)n Simple_repeat Simple_repeat 2 28 0 278 305 34 25 chr12 91958501 91958619 -52323870 + L2 LINE L2 3186 3304 -9 674 254 92 5 chr12 91958623 91958840 -52323649 + MIR SINE MIR 2 237 -25 1027 310 117 49 chr12 91960054 91960919 -52321570 - L2 LINE L2 0 3313 2390 261 303 100 42 chr12 91961268 91961509 -52320980 + L1MCc LINE L1 69 323 -6100 264 174 20 10 chr12 91961871 91961969 -52320520 + (TA)n Simple_repeat Simple_repeat 1 99 0 17545 93 5 1 chr12 91962777 91966088 -52316401 - L1PA7 LINE L1 -3 6151 2826 1142 81 0 0 chr12 91966088 91966236 -52316253 - AluY SINE Alu -8 303 156 14045 130 13 124 chr12 91966236 91969418 -52313071 - L1PA7 LINE L1 -3305 2841 15 28 29 0 0 chr12 91969921 91969956 -52312533 + AT_rich Low_complexity Low_complexity 1 35 0 555 100 0 0 chr12 91971148 91971228 -52311261 + AluS SINE Alu 1 80 -232 2019 139 24 9 chr12 91971328 91971667 -52310822 - L1MA4 LINE L1 -406 5894 5551 791 149 0 21 chr12 91971879 91972020 -52310469 - L1P4 LINE L1 -1770 4376 4239 4607 181 21 13 chr12 91972032 91973247 -52309242 + L1P4 LINE L1 4384 5612 -549 23 54 0 0 chr12 91974664 91974701 -52307788 + AT_rich Low_complexity Low_complexity 1 37 0 260 316 65 28 chr12 91974746 91974993 -52307496 - HAL1 LINE L1 -762 1745 1490 22 0 0 0 chr12 91975530 91975552 -52306937 + AT_rich Low_complexity Low_complexity 1 22 0 1552 78 0 0 chr12 91977241 91977446 -52305043 - L1PA7 LINE L1 -2 6152 5948 21 0 0 0 chr12 91977678 91977699 -52304790 + AT_rich Low_complexity Low_complexity 1 21 0 2066 103 3 7 chr12 91977830 91978112 -52304377 + AluSx SINE Alu 1 281 -31 252 0 0 0 chr12 91978115 91978143 -52304346 + (CAA)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr12 91978690 91978713 -52303776 + AT_rich Low_complexity Low_complexity 1 23 0 507 311 9 27 chr12 91979341 91979560 -52302929 + MLT1J LTR MaLR 2 216 -295 34 0 0 0 chr12 91979681 91979715 -52302774 + AT_rich Low_complexity Low_complexity 1 34 0 494 299 101 29 chr12 91980327 91980672 -52301817 - HAL1b LINE L1 -750 598 229 237 65 0 0 chr12 91980768 91980799 -52301690 + (TCCCC)n Simple_repeat Simple_repeat 2 32 0 28 48 0 0 chr12 91983395 91983437 -52299052 + AT_rich Low_complexity Low_complexity 1 42 0 378 86 0 17 chr12 91983783 91983841 -52298648 - L1PA7 LINE L1 0 6154 6098 853 68 0 0 chr12 91983841 91983959 -52298530 + L1P LINE L1 5268 5385 -769 24 32 0 0 chr12 91984191 91984222 -52298267 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr12 91984749 91984780 -52297709 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr12 91986409 91986436 -52296053 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr12 91987221 91987250 -52295239 + AT_rich Low_complexity Low_complexity 1 29 0 553 275 157 56 chr12 91987530 91987978 -52294511 + MLT1C LTR MaLR 2 464 -3 267 329 25 0 chr12 91988205 91988284 -52294205 + L2 LINE L2 3229 3309 -4 1396 182 3 55 chr12 91988521 91988829 -52293660 + AluJb SINE Alu 21 312 0 317 22 44 0 chr12 91990629 91990674 -52291815 + (TTTAG)n Simple_repeat Simple_repeat 5 51 0 1329 211 14 14 chr12 91990678 91990962 -52291527 - AluJb SINE Alu -15 287 4 25 0 0 0 chr12 91992193 91992218 -52290271 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr12 91992283 91992307 -52290182 + AT_rich Low_complexity Low_complexity 1 24 0 4983 159 24 22 chr12 91992442 91993361 -52289128 + MER49 LTR ERV1 3 923 0 183 129 0 0 chr12 91993915 91993946 -52288543 + (TTA)n Simple_repeat Simple_repeat 2 32 0 480 314 95 87 chr12 91994045 91994573 -52287916 - L2 LINE L2 0 3272 2731 630 59 0 59 chr12 91994615 91994767 -52287722 + (TA)n Simple_repeat Simple_repeat 2 144 0 22 35 0 0 chr12 91995440 91995469 -52287020 + AT_rich Low_complexity Low_complexity 1 29 0 202 240 0 20 chr12 91996432 91996482 -52286007 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 23 33 0 0 chr12 91998879 91998909 -52283580 + AT_rich Low_complexity Low_complexity 1 30 0 318 326 67 31 chr12 91998985 91999209 -52283280 - MIR SINE MIR 0 262 31 858 138 29 0 chr12 92000320 92000458 -52282031 - MLT1B LTR MaLR -248 142 1 773 347 98 31 chr12 92000460 92000954 -52281535 - L2 LINE L2 -321 2992 2456 218 360 81 16 chr12 92000979 92001165 -52281324 + L3 LINE CR1 1276 1473 -104 476 363 37 47 chr12 92001913 92002425 -52280064 + ERVL LTR ERVL 1210 1716 -4048 11190 221 12 7 chr12 92002780 92005471 -52277018 - L1PA15-16 LINE L1 -1388 5461 2761 5437 171 35 2 chr12 92005471 92006456 -52276033 - Tigger1 DNA MER2_type -1401 1017 1 219 397 50 0 chr12 92006969 92007110 -52275379 + L2 LINE L2 3158 3305 -8 207 242 0 0 chr12 92009553 92009615 -52272874 + (TA)n Simple_repeat Simple_repeat 2 63 0 21 0 0 0 chr12 92009806 92009827 -52272662 + AT_rich Low_complexity Low_complexity 1 21 0 181 284 9 9 chr12 92010644 92010753 -52271736 + (TA)n Simple_repeat Simple_repeat 2 110 0 189 338 129 57 chr12 92011280 92012068 -52270421 + L2 LINE L2 1335 2179 -1135 1451 222 26 7 chr12 92012192 92012517 -52269972 + MER47B DNA MER2_type 39 416 -2 1262 300 28 26 chr12 92012616 92013073 -52269416 + L1M3b LINE L1 301 758 -5523 * 2753 266 52 65 chr12 92013048 92014445 -52268044 + L1M3b LINE L1 617 1972 -4379 3637 208 36 17 chr12 92014478 92015499 -52266990 + L1M3b LINE L1 2779 3819 -2531 368 148 0 6 chr12 92015500 92015608 -52266881 + AluSp SINE Alu 1 174 -129 367 328 107 23 chr12 92015670 92015847 -52266642 + MIR SINE MIR 15 206 -56 2000 115 0 0 chr12 92015942 92016274 -52266215 - AluY SINE Alu 0 311 1 226 229 0 0 chr12 92016457 92016505 -52265984 + (TG)n Simple_repeat Simple_repeat 2 49 0 27 62 0 0 chr12 92016616 92016664 -52265825 + AT_rich Low_complexity Low_complexity 1 48 0 2461 57 0 0 chr12 92017047 92017347 -52265142 - AluY SINE Alu -11 300 1 413 303 63 50 chr12 92017411 92017649 -52264840 + MIR SINE MIR 22 262 0 22 70 0 0 chr12 92018082 92018125 -52264364 + AT_rich Low_complexity Low_complexity 1 43 0 1472 171 15 37 chr12 92018421 92018749 -52263740 - THE1C LTR MaLR 0 375 55 623 258 22 92 chr12 92018813 92018957 -52263532 + MIR SINE MIR 1 119 -143 1894 136 0 0 chr12 92018957 92019237 -52263252 + AluY SINE Alu 1 280 -31 623 258 22 92 chr12 92019237 92019363 -52263126 + MIR SINE MIR 119 252 -10 215 316 51 0 chr12 92019725 92019804 -52262685 - MIR SINE MIR -76 186 104 26 30 0 0 chr12 92020385 92020418 -52262071 + AT_rich Low_complexity Low_complexity 1 33 0 225 203 17 34 chr12 92020430 92020489 -52262000 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1928 123 0 17 chr12 92022222 92022522 -52259967 - AluSq SINE Alu -18 295 1 420 191 0 0 chr12 92023064 92023148 -52259341 + (TA)n Simple_repeat Simple_repeat 1 84 0 274 221 0 47 chr12 92023151 92023237 -52259252 + L1MC4 LINE L1 6614 6695 -1347 1454 218 0 19 chr12 92023609 92023916 -52258573 - AluJo SINE Alu -11 301 1 30 77 0 0 chr12 92024532 92024597 -52257892 + AT_rich Low_complexity Low_complexity 1 65 0 234 128 0 0 chr12 92024597 92024636 -52257853 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1830 130 44 0 chr12 92025368 92025691 -52256798 - AluSx SINE Alu 0 335 1 391 318 83 63 chr12 92025963 92026215 -52256274 + MIR SINE MIR 6 262 0 24 32 0 0 chr12 92026734 92026765 -52255724 + AT_rich Low_complexity Low_complexity 1 31 0 766 240 17 17 chr12 92026927 92027106 -52255383 - MLT1C LTR MaLR 0 467 289 491 267 27 27 chr12 92027108 92027258 -52255231 - MLT1C LTR MaLR -240 150 1 23 0 0 0 chr12 92028403 92028426 -52254063 + AT_rich Low_complexity Low_complexity 1 23 0 445 350 59 31 chr12 92030108 92030497 -52251992 + L2 LINE L2 1061 1460 -1854 1078 123 114 70 chr12 92031001 92031229 -52251260 - MSTA LTR MaLR -188 240 3 8454 200 24 7 chr12 92031235 92032848 -52249641 - MSTA-int LTR MaLR -4 1647 8 1192 150 90 79 chr12 92032854 92033106 -52249383 - MSTA LTR MaLR 0 428 174 4446 83 33 10 chr12 92033106 92034208 -52248281 + MER11A LTR ERVK 1 1266 0 779 109 14 10 chr12 92034224 92034360 -52248129 - MSTA LTR MaLR -282 144 1 1271 186 11 53 chr12 92034360 92034645 -52247844 - MER65A LTR ERV1 -172 273 1 35 0 0 0 chr12 92035432 92035467 -52247022 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr12 92035497 92035532 -52246957 + (TA)n Simple_repeat Simple_repeat 2 36 0 288 0 0 0 chr12 92035531 92035563 -52246926 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 255 61 0 0 chr12 92035897 92035930 -52246559 + (TG)n Simple_repeat Simple_repeat 2 34 0 1878 225 77 16 chr12 92036799 92037230 -52245259 + MER21B LTR ERV1 384 840 -23 2020 228 54 102 chr12 92037249 92038874 -52243615 - L1MC/D LINE L1 -605 5637 4104 494 252 8 0 chr12 92039310 92039429 -52243060 - MLT1D LTR MaLR 0 505 386 590 209 38 137 chr12 92039452 92039715 -52242774 - MLT1D LTR MaLR -262 243 7 1016 163 0 0 chr12 92039821 92039974 -52242515 - FRAM SINE Alu -22 154 2 291 308 50 25 chr12 92040971 92041130 -52241359 + MIR SINE MIR 94 256 -6 254 292 0 0 chr12 92041193 92041258 -52241231 + MARNA DNA Mariner 128 192 -394 206 62 31 0 chr12 92041420 92041452 -52241037 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 1879 111 73 14 chr12 92041560 92041848 -52240641 - AluSx SINE Alu -7 305 1 27 29 0 0 chr12 92041947 92041981 -52240508 + AT_rich Low_complexity Low_complexity 1 34 0 333 47 0 0 chr12 92042707 92042750 -52239739 + (CA)n Simple_repeat Simple_repeat 2 44 0 388 302 205 27 chr12 92043481 92043739 -52238750 - MLT1J LTR MaLR -207 304 1 2373 185 27 88 chr12 92043767 92044395 -52238094 - MER21B LTR ERV1 -1 862 273 2354 61 10 0 chr12 92044432 92044725 -52237764 + AluY SINE Alu 3 298 -13 2245 99 0 3 chr12 92044745 92045049 -52237440 + AluSc SINE Alu 5 307 -2 1140 166 29 104 chr12 92045049 92045473 -52237016 - MER39 LTR ERV1 -218 489 9 202 192 0 39 chr12 92045475 92045527 -52236962 + (TA)n Simple_repeat Simple_repeat 1 50 0 683 258 45 67 chr12 92045539 92045933 -52236556 + MLT1C LTR MaLR 31 467 0 1511 174 4 11 chr12 92046062 92046332 -52236157 - AluJo SINE Alu -44 268 1 33 56 0 0 chr12 92046334 92046388 -52236101 + AT_rich Low_complexity Low_complexity 1 54 0 24 32 0 0 chr12 92047649 92047680 -52234809 + AT_rich Low_complexity Low_complexity 1 31 0 399 281 41 70 chr12 92047680 92047851 -52234638 + MER5B DNA MER1_type 5 170 -8 1809 120 72 7 chr12 92049095 92049371 -52233118 + AluSx SINE Alu 1 294 -18 645 129 22 11 chr12 92049372 92049550 -52232939 + (TA)n Simple_repeat Simple_repeat 1 180 0 344 287 129 33 chr12 92049851 92050123 -52232366 - MLT1L LTR MaLR -164 451 154 289 365 0 9 chr12 92050517 92050624 -52231865 + MIR3 SINE MIR 78 183 -25 200 385 11 0 chr12 92051344 92051435 -52231054 + L2 LINE L2 2992 3083 -189 216 67 0 0 chr12 92051511 92051541 -52230948 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1980 132 0 4 chr12 92051541 92051821 -52230668 - AluSx SINE Alu -33 279 1 349 348 22 7 chr12 92051958 92052093 -52230396 - MIR SINE MIR -77 185 49 2349 67 3 7 chr12 92052135 92052434 -52230055 - AluY SINE Alu -13 298 1 4198 92 26 2 chr12 92054346 92054967 -52227522 + L1PA13 LINE L1 5528 6163 0 2288 105 0 6 chr12 92055027 92055342 -52227147 + AluSq SINE Alu 1 313 0 203 189 0 0 chr12 92056624 92056661 -52225828 + (TA)n Simple_repeat Simple_repeat 2 38 0 241 183 12 110 chr12 92057708 92057790 -52224699 + L2 LINE L2 3225 3298 -15 2422 70 0 0 chr12 92057793 92058092 -52224397 + AluY SINE Alu 13 311 0 224 369 40 13 chr12 92058361 92058510 -52223979 - L2 LINE L2 -431 2883 2731 202 182 18 18 chr12 92058737 92058792 -52223697 + T-rich Low_complexity Low_complexity 3 57 0 278 279 47 12 chr12 92058839 92058925 -52223564 - L2 LINE L2 0 3313 3225 670 174 6 93 chr12 92059527 92059688 -52222801 + Ricksha_b DNA DNA 1 147 -1107 553 170 0 0 chr12 92059681 92059775 -52222714 + ERVL LTR ERVL 5643 5736 -28 * 2003 135 82 15 chr12 92059775 92060116 -52222373 - THE1B LTR MaLR 0 364 1 10649 111 9 17 chr12 92060116 92060434 -52222055 - THE1B-int LTR MaLR 0 1580 1261 2397 78 3 7 chr12 92060434 92060741 -52221748 - AluSc SINE Alu -3 306 1 10649 111 9 17 chr12 92060741 92061974 -52220515 - THE1B-int LTR MaLR -319 1261 42 2102 107 79 16 chr12 92061974 92062292 -52220197 - THE1B LTR MaLR -26 338 1 3257 193 49 74 chr12 92062292 92063223 -52219266 + Ricksha_b DNA DNA 321 1228 -26 224 268 18 0 chr12 92063319 92063375 -52219114 + MIR SINE MIR 158 214 -48 215 373 0 0 chr12 92063428 92063503 -52218986 - L2 LINE L2 -47 3266 3192 363 273 50 10 chr12 92064391 92064490 -52217999 - L2 LINE L2 -2 3270 3168 509 332 29 50 chr12 92064759 92064938 -52217551 - MIR SINE MIR -2 260 86 356 95 0 0 chr12 92064938 92065001 -52217488 - L1MA7 LINE L1 -3 6288 6226 509 332 29 50 chr12 92065001 92065059 -52217430 - MIR SINE MIR -176 86 28 3229 160 15 15 chr12 92065729 92066330 -52216159 + L1MB3 LINE L1 5581 6181 -2 2238 94 7 0 chr12 92066651 92066949 -52215540 + AluSp SINE Alu 1 300 -13 21 71 0 0 chr12 92066968 92067010 -52215479 + AT_rich Low_complexity Low_complexity 1 42 0 779 70 9 0 chr12 92067122 92067237 -52215252 + (TC)n Simple_repeat Simple_repeat 2 117 0 266 247 117 13 chr12 92067453 92067530 -52214959 - L2 LINE L2 0 3313 3229 1021 196 63 35 chr12 92067611 92067896 -52214593 - AluJb SINE Alu -9 303 11 197 337 54 0 chr12 92068932 92069024 -52213465 + L3b LINE CR1 1353 1449 -134 243 313 102 14 chr12 92069362 92069509 -52212980 + MIR SINE MIR 94 253 -9 181 322 34 0 chr12 92069567 92069626 -52212863 + L2 LINE L2 3235 3295 -18 243 329 0 0 chr12 92069990 92070063 -52212426 + L2 LINE L2 3241 3313 0 315 341 137 6 chr12 92070758 92070940 -52211549 + MIR SINE MIR 6 211 -51 43 47 0 0 chr12 92070989 92071053 -52211436 + AT_rich Low_complexity Low_complexity 1 64 0 23 78 0 0 chr12 92071930 92071981 -52210508 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr12 92072164 92072193 -52210296 + AT_rich Low_complexity Low_complexity 1 29 0 200 393 0 12 chr12 92072937 92073021 -52209468 + L2 LINE L2 3005 3087 -226 4258 244 90 76 chr12 92074337 92076008 -52206481 + L1M4c LINE L1 2025 3739 -2643 3306 119 31 43 chr12 92076008 92076155 -52206334 - LTR19B LTR ERV1 0 580 433 2164 95 0 7 chr12 92076155 92076487 -52206002 - AluY SINE Alu 0 311 3 3306 119 31 43 chr12 92076487 92076926 -52205563 - LTR19B LTR ERV1 -147 433 1 4258 244 90 76 chr12 92076926 92078335 -52204154 + L1M4c LINE L1 3739 5128 -1254 7435 91 5 16 chr12 92078335 92079404 -52203085 + MER11C LTR ERVK 1 1057 -14 1098 221 4 0 chr12 92079438 92079678 -52202811 + L1P LINE L1 4882 5122 -1024 996 267 83 73 chr12 92079680 92079992 -52202497 - L1MDa LINE L1 -2393 4147 3840 258 95 0 0 chr12 92079992 92080034 -52202455 + (TG)n Simple_repeat Simple_repeat 1 42 0 996 267 83 73 chr12 92080034 92081123 -52201366 - L1MDa LINE L1 -2700 3840 2706 1764 80 13 17 chr12 92081123 92081360 -52201129 - AluY SINE Alu -12 299 64 996 267 83 73 chr12 92081360 92081513 -52200976 - L1MDa LINE L1 -3834 2706 2556 39959 74 4 3 chr12 92081513 92087648 -52194841 - L1PA5 LINE L1 -5 6149 11 569 271 52 79 chr12 92087659 92088397 -52194092 - L1MDa LINE L1 -3971 2569 1852 502 325 21 13 chr12 92088424 92088661 -52193828 - L1MDa LINE L1 -4881 1661 1423 237 255 0 0 chr12 92088664 92088715 -52193774 + LTR30 LTR ERV1 1 51 -671 1352 127 27 94 chr12 92088716 92089040 -52193449 + LTR12 LTR ERV1 55 2021 -417 239 296 0 0 chr12 92089040 92089121 -52193368 + LTR30 LTR ERV1 544 624 -98 788 143 25 0 chr12 92089121 92089240 -52193249 + LTR12 LTR ERV1 359 480 -234 731 283 74 20 chr12 92089320 92089727 -52192762 - L1MDa LINE L1 -5089 1454 1026 218 136 23 0 chr12 92090183 92090227 -52192262 + GA-rich Low_complexity Low_complexity 2 46 0 323 344 76 25 chr12 92090588 92090745 -52191744 - L1MDa LINE L1 -6342 198 34 622 276 87 57 chr12 92090768 92090934 -52191555 - L2 LINE L2 -605 2709 2531 1987 32 0 24 chr12 92090934 92091221 -52191268 - L1PA4 LINE L1 0 6155 5911 622 276 87 57 chr12 92091221 92091318 -52191171 - L2 LINE L2 -783 2531 2438 539 256 59 22 chr12 92091382 92091591 -52190898 + L1MC4a LINE L1 5772 5980 -141 180 405 0 12 chr12 92091713 92091797 -52190692 - L2 LINE L2 -4 3268 3186 297 300 134 18 chr12 92092183 92092460 -52190029 - L1ME4a LINE L1 -250 5871 5563 306 330 11 0 chr12 92093563 92093651 -52188838 - L2 LINE L2 0 3313 3225 23 108 0 0 chr12 92094023 92094116 -52188373 + AT_rich Low_complexity Low_complexity 1 93 0 205 288 0 45 chr12 92094289 92094355 -52188134 + MIR SINE MIR 66 128 -134 25 31 0 0 chr12 92095087 92095119 -52187370 + AT_rich Low_complexity Low_complexity 1 32 0 340 295 172 53 chr12 92095129 92095634 -52186855 + HAL1 LINE L1 1301 1865 -642 1764 217 51 72 chr12 92096766 92097332 -52185157 - MLT2B3 LTR ERVL 0 554 1 255 132 0 0 chr12 92097417 92097455 -52185034 + L1MC/D LINE L1 5745 5782 -460 2142 141 0 0 chr12 92097481 92097793 -52184696 + AluSx SINE Alu 1 312 0 6124 30 30 0 chr12 92097994 92098729 -52183760 + L1PA4 LINE L1 5397 6153 -2 5431 34 34 0 chr12 92098073 92098731 -52183758 + L1PA4 LINE L1 5476 6217 0 239 161 32 32 chr12 92098731 92098793 -52183696 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chr12 92098941 92098962 -52183527 + AT_rich Low_complexity Low_complexity 1 21 0 501 17 0 0 chr12 92099230 92099288 -52183201 + (CA)n Simple_repeat Simple_repeat 2 59 0 319 290 91 57 chr12 92100807 92100983 -52181506 + MLT1J LTR MaLR 229 410 -101 184 250 23 0 chr12 92101193 92101237 -52181252 - L2 LINE L2 -7 3306 3262 1254 65 0 7 chr12 92101267 92101422 -52181067 + AluY SINE Alu 1 154 -157 7093 199 20 4 chr12 92101424 92103011 -52179478 - L1PA12 LINE L1 -5704 1877 3 371 230 160 39 chr12 92103350 92103707 -52178782 - L1M4 LINE L1 -2868 3278 2879 225 139 0 0 chr12 92104243 92104286 -52178203 + (TG)n Simple_repeat Simple_repeat 2 44 0 903 240 31 43 chr12 92104753 92105007 -52177482 + MIR SINE MIR 9 259 -3 2084 125 3 0 chr12 92105024 92105319 -52177170 - AluSx SINE Alu -7 305 10 4748 117 10 4 chr12 92105319 92106004 -52176485 + LTR8 LTR ERV1 3 691 0 297 304 0 0 chr12 92106137 92106229 -52176260 + MER94 DNA DNA 8 99 -35 1621 168 48 14 chr12 92106399 92106691 -52175798 - AluJb SINE Alu -10 302 1 205 29 29 29 chr12 92106862 92106897 -52175592 + (CAT)n Simple_repeat Simple_repeat 2 36 0 486 328 81 0 chr12 92106942 92107116 -52175373 - MIR SINE MIR -74 188 1 404 220 94 31 chr12 92107592 92107751 -52174738 - MER67D LTR ERV1 0 514 346 458 229 129 19 chr12 92107755 92107922 -52174567 - MER2 DNA MER2_type -1 344 197 2936 137 50 0 chr12 92107922 92108405 -52174084 - MER84 LTR ERV1 0 507 1 458 229 129 19 chr12 92108405 92108478 -52174011 - MER2 DNA MER2_type -148 197 24 1556 198 11 58 chr12 92108490 92108849 -52173640 - MER67D LTR ERV1 -171 343 2 23 33 0 0 chr12 92109061 92109091 -52173398 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr12 92111837 92111867 -52170622 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr12 92112104 92112139 -52170350 + AT_rich Low_complexity Low_complexity 1 35 0 2097 133 6 6 chr12 92112257 92112588 -52169901 + MER50 LTR ERV1 1 331 -403 * 2369 159 68 26 chr12 92112581 92113039 -52169450 + MER50 LTR ERV1 235 711 -23 300 239 42 0 chr12 92113252 92113323 -52169166 + L2 LINE L2 3198 3271 -1 1379 241 32 3 chr12 92113522 92113833 -52168656 - MER39 LTR ERV1 -20 687 368 406 237 102 17 chr12 92113865 92113983 -52168506 - MER39 LTR ERV1 -576 131 4 202 304 25 38 chr12 92114096 92114175 -52168314 - L2 LINE L2 0 3313 3236 354 60 0 15 chr12 92114701 92114766 -52167723 - Alu SINE Alu -258 44 1 1289 266 74 32 chr12 92114767 92114858 -52167631 - L1M4 LINE L1 -1395 4751 4665 1950 143 4 0 chr12 92114858 92115183 -52167306 - AluSg SINE Alu 0 326 1 1289 266 74 32 chr12 92115183 92115818 -52166671 - L1M4 LINE L1 -1481 4665 3993 397 271 74 97 chr12 92115901 92116252 -52166237 + HAL1 LINE L1 11 353 -2154 1034 189 40 4 chr12 92116569 92116797 -52165692 + MER96B DNA MER1_type? 1 236 -181 309 263 38 0 chr12 92116802 92116882 -52165607 + HAL1 LINE L1 1108 1190 -1317 1240 120 81 4 chr12 92117528 92117673 -52164816 - L1MA9 LINE L1 0 6312 6141 333 0 0 0 chr12 92117673 92117710 -52164779 + (TG)n Simple_repeat Simple_repeat 1 37 0 1240 120 81 4 chr12 92117710 92117798 -52164691 - L1MA9 LINE L1 -171 6141 6061 229 293 135 30 chr12 92117865 92117998 -52164491 - MIR SINE MIR -58 204 58 1900 161 3 0 chr12 92118112 92118411 -52164078 - AluJb SINE Alu -12 300 1 245 242 6 50 chr12 92119517 92119678 -52162811 + A-rich Low_complexity Low_complexity 1 154 0 21 82 0 0 chr12 92120275 92120324 -52162165 + AT_rich Low_complexity Low_complexity 1 49 0 220 329 64 27 chr12 92120703 92120919 -52161570 - MIR SINE MIR -32 230 5 1868 127 25 11 chr12 92121193 92121477 -52161012 - AluSx SINE Alu -13 299 12 22 35 0 0 chr12 92122736 92122765 -52159724 + AT_rich Low_complexity Low_complexity 1 29 0 12456 171 46 20 chr12 92122803 92124687 -52157802 + L1MA3 LINE L1 2429 4262 -2043 2152 122 3 0 chr12 92124687 92124983 -52157506 + AluSq SINE Alu 5 301 -12 12456 171 46 20 chr12 92124983 92126882 -52155607 + L1MA3 LINE L1 4262 6305 0 432 299 120 21 chr12 92126926 92126957 -52155532 - MIR SINE MIR 0 262 235 1737 192 162 9 chr12 92126957 92127020 -52155469 - MLT1D LTR MaLR 0 505 453 2130 53 25 71 chr12 92127020 92127342 -52155147 - AluY SINE Alu -4 307 1 1737 192 162 9 chr12 92127342 92127716 -52154773 - MLT1D LTR MaLR -52 453 1 432 299 120 21 chr12 92127716 92127918 -52154571 - MIR SINE MIR -27 235 6 2233 161 25 39 chr12 92128831 92129265 -52153224 + MSTA LTR MaLR 1 428 0 566 347 42 24 chr12 92129794 92130007 -52152482 - MIR SINE MIR -41 221 5 1662 176 11 7 chr12 92130289 92130588 -52151901 - AluJb SINE Alu 0 302 3 835 238 30 2 chr12 92130741 92130983 -52151506 + L1MA8 LINE L1 5625 5814 -369 412 231 0 0 chr12 92130943 92131034 -52151455 - L1MA4A LINE L1 -23 6982 6892 * 3800 192 40 25 chr12 92131042 92132554 -52149935 - L1MA4A LINE L1 -183 6822 5281 1744 159 8 55 chr12 92132556 92132781 -52149708 + L1MB3 LINE L1 5817 6021 -162 2001 93 0 47 chr12 92132781 92133122 -52149367 + AluSx SINE Alu 1 327 0 1744 159 8 55 chr12 92133122 92133276 -52149213 + L1MB3 LINE L1 6021 6181 -2 438 20 0 0 chr12 92134100 92134151 -52148338 + (TA)n Simple_repeat Simple_repeat 1 51 0 308 297 22 0 chr12 92134400 92134491 -52147998 - L1MC3 LINE L1 -1122 6663 6571 218 229 92 101 chr12 92134839 92134948 -52147541 + MIR SINE MIR 34 141 -121 22 35 0 0 chr12 92135609 92135638 -52146851 + AT_rich Low_complexity Low_complexity 1 29 0 929 218 53 0 chr12 92135638 92135863 -52146626 - L1MA4A LINE L1 -4061 2788 2552 8137 204 45 7 chr12 92135863 92137799 -52144690 + L1PB4 LINE L1 2945 4953 -1193 2473 130 2 14 chr12 92137800 92138230 -52144259 - MER52A LTR ERV1 0 1755 1331 2095 167 131 34 chr12 92138220 92138748 -52143741 - MER52A LTR ERV1 -1176 579 1 * 4424 176 19 22 chr12 92138794 92139980 -52142509 + L1PB4 LINE L1 4960 6154 -2 21 36 0 0 chr12 92140412 92140440 -52142049 + AT_rich Low_complexity Low_complexity 1 28 0 266 347 62 35 chr12 92141028 92141107 -52141382 - L2 LINE L2 -445 2869 2783 954 47 79 0 chr12 92141107 92141234 -52141255 - MER85 DNA T2_type -2 137 1 266 347 62 35 chr12 92141234 92141298 -52141191 - L2 LINE L2 -531 2783 2722 184 354 12 12 chr12 92141816 92141898 -52140591 + L2 LINE L2 3187 3268 -4 208 240 40 0 chr12 92141976 92142026 -52140463 - L2 LINE L2 -8 3305 3254 26 0 0 0 chr12 92142257 92142283 -52140206 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr12 92142344 92142367 -52140122 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr12 92144153 92144188 -52138301 + AT_rich Low_complexity Low_complexity 1 35 0 24 77 0 0 chr12 92144336 92144388 -52138101 + AT_rich Low_complexity Low_complexity 1 52 0 203 138 0 0 chr12 92144615 92144644 -52137845 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 477 0 0 0 chr12 92144824 92144877 -52137612 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 27 62 0 0 chr12 92145128 92145176 -52137313 + AT_rich Low_complexity Low_complexity 1 48 0 21 71 0 0 chr12 92147617 92147659 -52134830 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr12 92148928 92148953 -52133536 + AT_rich Low_complexity Low_complexity 1 25 0 219 186 0 0 chr12 92149790 92149833 -52132656 + CT-rich Low_complexity Low_complexity 2 44 0 282 307 13 0 chr12 92149866 92149941 -52132548 - L2 LINE L2 -24 3289 3214 30 59 0 0 chr12 92150425 92150476 -52132013 + AT_rich Low_complexity Low_complexity 1 51 0 482 230 35 0 chr12 92152026 92152139 -52130350 + MIR SINE MIR 137 253 -9 378 0 0 0 chr12 92152789 92152831 -52129658 + (TC)n Simple_repeat Simple_repeat 1 42 0 317 340 90 78 chr12 92153070 92153493 -52128996 - L2 LINE L2 -4 3268 2841 31 26 0 0 chr12 92154097 92154135 -52128354 + AT_rich Low_complexity Low_complexity 1 38 0 504 0 0 0 chr12 92154898 92154954 -52127535 + (GGAA)n Simple_repeat Simple_repeat 2 57 0 185 254 95 0 chr12 92154980 92155043 -52127446 - L2 LINE L2 -963 2351 2283 283 316 0 10 chr12 92155048 92155146 -52127343 - L2 LINE L2 -1178 2136 2040 343 348 26 85 chr12 92155280 92155752 -52126737 + L2 LINE L2 2723 3218 -54 181 281 70 0 chr12 92156250 92156307 -52126182 - L2 LINE L2 -1378 1936 1876 1240 69 0 0 chr12 92156810 92156969 -52125520 + AluY SINE Alu 147 305 -6 21 0 0 0 chr12 92157164 92157185 -52125304 + AT_rich Low_complexity Low_complexity 1 21 0 451 260 194 15 chr12 92158054 92158250 -52124239 + MIR SINE MIR 23 253 -9 345 281 107 0 chr12 92158501 92158622 -52123867 + L2 LINE L2 3180 3313 0 1977 245 76 23 chr12 92159219 92159782 -52122707 - MLT1E LTR MaLR 0 593 1 211 200 25 0 chr12 92160323 92160363 -52122126 + (TG)n Simple_repeat Simple_repeat 1 41 0 1470 292 47 41 chr12 92161620 92162673 -52119816 + L1MC4 LINE L1 6996 7995 0 195 42 0 0 chr12 92162962 92162986 -52119503 + (TG)n Simple_repeat Simple_repeat 1 24 0 255 93 0 0 chr12 92163082 92163125 -52119364 + (TTTTA)n Simple_repeat Simple_repeat 4 46 0 1565 22 5 0 chr12 92163125 92163310 -52119179 - L1HS LINE L1 -16 6139 5954 24 32 0 0 chr12 92163646 92163677 -52118812 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr12 92165689 92165717 -52116772 + AT_rich Low_complexity Low_complexity 1 28 0 292 324 159 6 chr12 92165717 92165893 -52116596 - MIR SINE MIR -1 261 59 245 75 25 0 chr12 92165976 92166016 -52116473 + (TG)n Simple_repeat Simple_repeat 2 42 0 197 143 0 20 chr12 92166119 92166168 -52116321 + (TA)n Simple_repeat Simple_repeat 2 49 0 455 307 89 6 chr12 92168338 92168517 -52113972 + MLT1L LTR MaLR 360 553 -62 421 371 94 38 chr12 92168785 92169471 -52113018 - L2 LINE L2 -6 3266 2540 377 296 107 91 chr12 92169473 92169977 -52112512 - L2 LINE L2 -1000 2314 1803 384 297 62 8 chr12 92173067 92173195 -52109294 - L2 LINE L2 -1 3312 3178 215 350 118 41 chr12 92173457 92173677 -52108812 + L2 LINE L2 3027 3263 -9 26 50 0 0 chr12 92174062 92174102 -52108387 + AT_rich Low_complexity Low_complexity 1 40 0 216 326 84 11 chr12 92175096 92175191 -52107298 + L2 LINE L2 3210 3311 -2 330 347 35 7 chr12 92175787 92175931 -52106558 - L2 LINE L2 -647 2667 2520 1123 328 66 56 chr12 92175941 92176748 -52105741 - L2 LINE L2 -1171 2143 1329 7558 205 31 17 chr12 92177219 92179048 -52103441 - L1 LINE L1 -1941 4907 3054 2524 266 27 116 chr12 92179048 92180416 -52102073 - L1 LINE L1 -5452 1397 151 209 194 0 0 chr12 92181279 92181315 -52101174 + (TATG)n Simple_repeat Simple_repeat 3 38 0 1073 199 65 116 chr12 92181319 92181690 -52100799 - MER57A LTR ERV1 0 403 52 1834 297 57 48 chr12 92181703 92182611 -52099878 - MER57A-int LTR ERV1 -389 7148 6233 1094 267 14 74 chr12 92182865 92183327 -52099162 - MER57A-int LTR ERV1 -778 6177 3929 2382 205 23 62 chr12 92183654 92184024 -52098465 - MER57A-int LTR ERV1 -1716 5821 5487 2248 117 0 3 chr12 92184024 92184332 -52098157 - AluSc SINE Alu -2 307 1 2382 205 23 62 chr12 92184332 92184619 -52097870 - MER57A-int LTR ERV1 -2050 5487 5190 1467 242 98 82 chr12 92184608 92185764 -52096725 - MER57A-int LTR ERV1 -1886 3050 1877 * 1824 116 0 4 chr12 92185789 92186066 -52096423 + AluSx SINE Alu 35 310 0 499 211 10 0 chr12 92186132 92186236 -52096253 - MER34 LTR ERV1 -305 237 133 276 263 53 11 chr12 92186236 92186331 -52096158 - LTR57-int LTR ERVL -3862 1481 1383 782 231 134 30 chr12 92186353 92186852 -52095637 - MER57A-int LTR ERV1 -3132 3199 888 730 279 45 0 chr12 92187264 92187465 -52095024 - MER57A-int LTR ERV1 -7323 214 5 945 251 93 49 chr12 92187470 92187856 -52094633 - MER57A LTR ERV1 0 403 1 23 0 0 0 chr12 92188058 92188081 -52094408 + AT_rich Low_complexity Low_complexity 1 23 0 431 340 132 51 chr12 92188344 92188435 -52094054 - L2 LINE L2 0 3313 3231 1167 225 51 36 chr12 92188435 92188791 -52093698 + MLT1A1 LTR MaLR 5 365 0 431 340 132 51 chr12 92188791 92189320 -52093169 - L2 LINE L2 -82 3231 2630 2687 16 0 13 chr12 92190308 92190623 -52091866 - AluYa5 SINE Alu 0 311 1 1856 98 0 81 chr12 92191606 92191949 -52090540 - AluY SINE Alu 0 318 1 248 298 156 35 chr12 92192251 92192392 -52090097 - L2 LINE L2 -170 3102 2945 210 316 101 36 chr12 92192509 92192677 -52089812 + L2 LINE L2 3133 3311 -2 23 0 0 0 chr12 92194842 92194865 -52087624 + AT_rich Low_complexity Low_complexity 1 23 0 721 139 95 51 chr12 92194924 92195035 -52087454 - MER67C LTR ERV1 -474 236 115 1832 150 10 7 chr12 92195035 92195335 -52087154 - AluSx SINE Alu -11 301 1 721 139 95 51 chr12 92195335 92195381 -52087108 - MER67C LTR ERV1 -595 115 72 544 145 0 0 chr12 92195426 92195509 -52086980 - MER67D LTR ERV1 -431 83 1 1618 78 4 9 chr12 92196017 92196247 -52086242 + L1PA8 LINE L1 5944 6172 0 315 277 64 0 chr12 92196302 92196396 -52086093 + MIR SINE MIR 97 196 -66 238 286 0 18 chr12 92196554 92196610 -52085879 + L2 LINE L2 3209 3263 -9 583 110 0 0 chr12 92197371 92197453 -52085036 - MSTC LTR MaLR -346 82 1 23 33 0 0 chr12 92198165 92198195 -52084294 + AT_rich Low_complexity Low_complexity 1 30 0 2330 80 3 0 chr12 92199538 92199839 -52082650 - AluSq SINE Alu -11 302 1 454 263 112 19 chr12 92200410 92200459 -52082030 + L1ME LINE L1 601 644 -5334 279 0 0 0 chr12 92200459 92200490 -52081999 + (CA)n Simple_repeat Simple_repeat 2 32 0 454 263 112 19 chr12 92200490 92200981 -52081508 + L1ME LINE L1 644 1082 -4896 1577 299 98 9 chr12 92200990 92201919 -52080570 + L1ME2 LINE L1 3723 4734 -1412 75 75 0 0 chr12 92201919 92202078 -52080411 + AT_rich Low_complexity Low_complexity 1 159 0 285 323 18 42 chr12 92202078 92202245 -52080244 + L1ME2 LINE L1 4730 4892 -1254 269 169 45 79 chr12 92202350 92202396 -52080093 + L1ME2 LINE L1 5195 5238 -908 1434 201 52 46 chr12 92202396 92202784 -52079705 - MLT1B LTR MaLR 0 390 1 269 169 45 79 chr12 92202784 92202826 -52079663 + L1ME2 LINE L1 5238 5280 -866 1819 250 60 43 chr12 92202852 92203640 -52078849 + L1ME2 LINE L1 5361 6161 -3 270 81 0 0 chr12 92204362 92204399 -52078090 + (CAG)n Simple_repeat Simple_repeat 3 39 0 23 0 0 0 chr12 92205016 92205039 -52077450 + AT_rich Low_complexity Low_complexity 1 23 0 202 150 25 0 chr12 92205772 92205812 -52076677 + (TCTA)n Simple_repeat Simple_repeat 3 43 0 1083 229 81 14 chr12 92205812 92206109 -52076380 - MLT1A1 LTR MaLR 0 365 49 258 214 0 0 chr12 92206132 92206188 -52076301 + L1MC4 LINE L1 6648 6703 -1339 2128 185 46 0 chr12 92206198 92206635 -52075854 + MLT1-int LTR MaLR 191 647 -724 645 238 81 0 chr12 92206635 92206795 -52075694 + MLT1-int LTR MaLR 559 731 -640 276 178 59 172 chr12 92206922 92207091 -52075398 + MLT1-int LTR MaLR 680 829 -906 355 315 42 21 chr12 92207096 92207239 -52075250 + MLT1-int LTR MaLR 1255 1400 -335 1067 206 16 40 chr12 92207241 92207494 -52074995 + MLT1B LTR MaLR 144 390 0 261 265 12 0 chr12 92207495 92207578 -52074911 + (TA)n Simple_repeat Simple_repeat 2 85 0 26 64 0 0 chr12 92208185 92208232 -52074257 + AT_rich Low_complexity Low_complexity 1 47 0 2135 111 0 29 chr12 92208741 92209048 -52073441 + AluSq SINE Alu 1 298 -15 363 310 138 24 chr12 92209566 92210059 -52072430 + L1ME LINE L1 1135 1683 -4578 22 0 0 0 chr12 92210101 92210123 -52072366 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 92210183 92210206 -52072283 + AT_rich Low_complexity Low_complexity 1 23 0 390 305 162 7 chr12 92210351 92210784 -52071705 + L1ME LINE L1 2045 2544 -3536 1052 237 39 19 chr12 92210832 92211242 -52071247 - ERVL LTR ERVL -4731 1033 536 3362 52 2 0 chr12 92211253 92211675 -52070814 - L1PA5 LINE L1 -5 6149 5727 25 51 0 0 chr12 92212519 92212558 -52069931 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr12 92212880 92212901 -52069588 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 5663 49 6 1 chr12 92213107 92213819 -52068670 - L1PA5 LINE L1 -2 6152 5438 261 340 75 27 chr12 92214521 92214709 -52067780 + L3 LINE CR1 1313 1509 -68 428 348 89 5 chr12 92214778 92215002 -52067487 + MIR SINE MIR 20 262 0 309 343 135 12 chr12 92215812 92216057 -52066432 - L2 LINE L2 -52 3261 2987 246 136 61 0 chr12 92216768 92216834 -52065655 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 23 54 0 0 chr12 92217268 92217305 -52065184 + AT_rich Low_complexity Low_complexity 1 37 0 281 174 14 0 chr12 92218433 92218502 -52063987 + CT-rich Low_complexity Low_complexity 3 72 0 4842 190 11 52 chr12 92218611 92219751 -52062738 - L1PA16 LINE L1 -9 6157 5156 2400 60 0 13 chr12 92219751 92220066 -52062423 - AluY SINE Alu 0 311 1 4842 190 11 52 chr12 92220066 92221108 -52061381 - L1PA16 LINE L1 -1010 5156 4073 848 67 0 0 chr12 92221108 92221212 -52061277 - AluSc SINE Alu -205 104 1 33 43 0 0 chr12 92222778 92222825 -52059664 + AT_rich Low_complexity Low_complexity 1 47 0 460 301 62 16 chr12 92222851 92223044 -52059445 - MIR SINE MIR -27 235 34 610 269 176 14 chr12 92223334 92223550 -52058939 - MER45C DNA AcHobo 0 953 703 784 269 46 50 chr12 92223570 92223910 -52058579 - MER45C DNA AcHobo -577 376 1 1855 181 24 0 chr12 92224057 92224395 -52058094 + MER7A DNA MER2_type 3 346 0 1981 129 0 7 chr12 92224533 92224847 -52057642 - AluSx SINE Alu 0 312 1 21 0 0 0 chr12 92225601 92225622 -52056867 + AT_rich Low_complexity Low_complexity 1 21 0 1374 216 84 14 chr12 92225810 92226180 -52056309 + MSTD LTR MaLR 1 396 0 295 358 61 24 chr12 92226571 92226736 -52055753 + MIR SINE MIR 81 251 -11 21 89 0 0 chr12 92227418 92227474 -52055015 + AT_rich Low_complexity Low_complexity 1 56 0 2446 61 0 3 chr12 92227484 92227796 -52054693 + AluY SINE Alu 1 311 0 1652 241 61 40 chr12 92228786 92229362 -52053127 - L1ME2 LINE L1 -19 6145 5558 1088 236 83 31 chr12 92229582 92229908 -52052581 - MER2 DNA MER2_type 0 344 2 2200 119 3 0 chr12 92230017 92230329 -52052160 - AluSp SINE Alu 0 313 1 1640 234 66 16 chr12 92230451 92230891 -52051598 - MLT1C LTR MaLR -2 465 4 251 192 14 0 chr12 92231552 92231625 -52050864 + GA-rich Low_complexity Low_complexity 1 74 0 2029 126 0 0 chr12 92232760 92233045 -52049444 + AluSx SINE Alu 3 287 -25 258 56 0 0 chr12 92233061 92233097 -52049392 + (CCAA)n Simple_repeat Simple_repeat 4 39 0 2049 78 7 7 chr12 92236070 92236377 -52046112 + AluY SINE Alu 1 307 0 25 31 0 0 chr12 92236575 92236607 -52045882 + AT_rich Low_complexity Low_complexity 1 32 0 433 307 74 17 chr12 92236866 92237097 -52045392 - L1ME LINE L1 -339 5782 5539 212 167 0 0 chr12 92237794 92237830 -52044659 + (TATG)n Simple_repeat Simple_repeat 3 38 0 5735 125 64 116 chr12 92238880 92240230 -52042259 + pTR5 LTR ERV1 741 2020 -418 313 243 29 19 chr12 92240230 92240333 -52042156 + LTR30 LTR ERV1 539 642 -80 1175 149 56 0 chr12 92240334 92240529 -52041960 + LTR12 LTR ERV1 377 582 -132 234 325 65 24 chr12 92240953 92241122 -52041367 - L2 LINE L2 -1801 1513 1338 21 36 0 0 chr12 92241699 92241727 -52040762 + AT_rich Low_complexity Low_complexity 1 28 0 1382 146 116 36 chr12 92241887 92242189 -52040300 - THE1C LTR MaLR -49 326 1 43 81 0 0 chr12 92243521 92243620 -52038869 + AT_rich Low_complexity Low_complexity 1 99 0 252 95 24 0 chr12 92244059 92244101 -52038388 + MADE1 DNA Mariner 1 43 -37 232 203 85 0 chr12 92244380 92244439 -52038050 + LTR10A LTR ERV1 472 535 -74 445 156 18 55 chr12 92245113 92245222 -52037267 - L1PA15 LINE L1 0 6165 6061 2052 105 35 0 chr12 92245503 92245788 -52036701 + AluSx SINE Alu 1 295 -17 5120 205 14 1 chr12 92246061 92247194 -52035295 + L1PA15 LINE L1 4280 5424 -741 6664 66 16 1 chr12 92247194 92248481 -52034008 + L1PA7 LINE L1 4855 6154 0 4238 145 9 21 chr12 92248499 92249259 -52033230 + L1PA15 LINE L1 5413 6163 -2 279 269 61 51 chr12 92249939 92250136 -52032353 - L1ME LINE L1 -260 5861 5663 406 290 9 9 chr12 92250422 92250529 -52031960 - L2 LINE L2 -15 3298 3192 22 0 0 0 chr12 92251543 92251565 -52030924 + AT_rich Low_complexity Low_complexity 1 22 0 27 62 0 0 chr12 92252422 92252470 -52030019 + AT_rich Low_complexity Low_complexity 1 48 0 474 295 101 62 chr12 92253023 92253059 -52029430 + L1MEc LINE L1 629 662 -5734 200 33 0 33 chr12 92253059 92253089 -52029400 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 474 295 101 62 chr12 92253089 92254090 -52028399 + L1MEc LINE L1 662 1707 -4689 654 185 15 8 chr12 92254162 92254292 -52028197 + AluJo SINE Alu 6 136 -176 203 262 0 0 chr12 92254376 92254437 -52028052 + (TA)n Simple_repeat Simple_repeat 2 62 0 204 209 23 0 chr12 92254467 92254510 -52027979 + GA-rich Low_complexity Low_complexity 1 44 0 26 30 0 0 chr12 92255661 92255694 -52026795 + AT_rich Low_complexity Low_complexity 1 33 0 641 278 54 21 chr12 92257025 92257266 -52025223 + L1ME1 LINE L1 5918 6166 0 228 195 0 0 chr12 92257338 92257379 -52025110 - 5S rRNA rRNA -78 43 3 1475 158 23 2 chr12 92259407 92259826 -52022663 - LTR54 LTR ERV1 0 510 5 271 237 26 44 chr12 92259845 92259959 -52022530 + A-rich Low_complexity Low_complexity 4 115 0 230 189 0 38 chr12 92260126 92260179 -52022310 + MIR SINE MIR 186 236 -26 1297 120 6 0 chr12 92260193 92260376 -52022113 - AluSg/x SINE Alu -17 293 110 1237 236 11 73 chr12 92260653 92261034 -52021455 + MLT1A2 LTR MaLR 18 374 0 516 303 27 11 chr12 92261063 92261248 -52021241 - MIR SINE MIR -14 248 61 201 205 17 34 chr12 92261910 92262027 -52020462 + GA-rich Low_complexity Low_complexity 4 118 0 244 308 274 15 chr12 92262082 92262407 -52020082 + L3 LINE CR1 857 1265 -312 2486 116 0 0 chr12 92263283 92263638 -52018851 - THE1A LTR MaLR 0 355 1 11064 98 11 10 chr12 92263638 92265216 -52017273 - THE1A-int LTR MaLR 0 1580 1 2635 99 0 0 chr12 92265216 92265569 -52016920 - THE1A LTR MaLR 0 355 3 2399 75 0 0 chr12 92266347 92266642 -52015847 + AluY SINE Alu 1 295 -16 28 0 0 0 chr12 92266705 92266733 -52015756 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr12 92267951 92267980 -52014509 + AT_rich Low_complexity Low_complexity 1 29 0 552 302 45 0 chr12 92268459 92268591 -52013898 + MER5A DNA MER1_type 1 145 -44 2193 75 3 56 chr12 92268591 92268911 -52013578 - AluY SINE Alu -8 303 1 552 302 45 0 chr12 92268911 92268957 -52013532 + MER5A DNA MER1_type 145 187 -2 249 300 146 64 chr12 92270048 92270281 -52012208 - MIR SINE MIR 0 262 11 438 20 0 0 chr12 92270421 92270472 -52012017 + (TG)n Simple_repeat Simple_repeat 2 52 0 22 56 0 0 chr12 92271092 92271128 -52011361 + AT_rich Low_complexity Low_complexity 1 36 0 324 322 91 14 chr12 92272039 92272182 -52010307 + L2 LINE L2 3155 3308 -5 456 264 53 66 chr12 92272406 92272633 -52009856 - MIR SINE MIR -26 236 13 244 287 119 10 chr12 92272934 92273035 -52009454 + MIR SINE MIR 41 152 -110 2182 108 10 0 chr12 92273188 92273493 -52008996 - AluSp SINE Alu -5 308 1 217 0 0 57 chr12 92273652 92273687 -52008802 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 1306 162 0 0 chr12 92273701 92273911 -52008578 - AluJo SINE Alu -102 210 1 187 278 0 19 chr12 92274917 92274971 -52007518 - L2 LINE L2 -27 3245 3193 922 232 131 63 chr12 92275865 92276261 -52006228 - L1MC4 LINE L1 -239 7803 7381 1890 172 57 26 chr12 92276747 92277131 -52005358 + MSTD LTR MaLR 1 396 0 1741 166 14 0 chr12 92277906 92278189 -52004300 - AluSx SINE Alu -21 291 5 24 0 0 0 chr12 92278753 92278777 -52003712 + AT_rich Low_complexity Low_complexity 1 24 0 210 313 25 12 chr12 92279931 92280011 -52002478 + L2 LINE L2 3005 3085 -228 213 369 0 12 chr12 92280102 92280186 -52002303 + L2 LINE L2 3227 3309 -4 1427 188 46 3 chr12 92281093 92281375 -52001114 + AluJo SINE Alu 3 296 -16 290 272 36 81 chr12 92281487 92281615 -52000874 + MER5A DNA MER1_type 9 128 -50 5383 137 22 9 chr12 92281929 92283570 -51998919 - L1PA16 LINE L1 -3 6163 4495 7823 238 15 28 chr12 92283573 92285831 -51996658 + L1PA15-16 LINE L1 2915 5142 -1707 1367 179 94 34 chr12 92286658 92286955 -51995534 + THE1C LTR MaLR 1 324 -51 204 40 0 0 chr12 92286955 92286980 -51995509 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 1367 179 94 34 chr12 92286980 92287034 -51995455 + THE1C LTR MaLR 324 373 -2 29 28 0 0 chr12 92287390 92287426 -51995063 + AT_rich Low_complexity Low_complexity 1 36 0 188 404 83 13 chr12 92287717 92287873 -51994616 + MIR SINE MIR 14 180 -82 2180 102 7 0 chr12 92287963 92288258 -51994231 + AluSp SINE Alu 1 297 -16 236 228 123 0 chr12 92288259 92288316 -51994173 + L2 LINE L2 2182 2245 -1069 548 201 35 14 chr12 92288336 92288480 -51994009 - LTR37B LTR ERV1 -5 463 317 328 204 139 9 chr12 92288522 92288630 -51993859 - LTR37B LTR ERV1 -149 319 198 756 354 147 20 chr12 92288895 92289787 -51992702 + L2 LINE L2 2294 3312 -1 2376 196 37 20 chr12 92289967 92290425 -51992064 - MER70A LTR ERVL -6 466 1 1709 155 41 72 chr12 92290693 92291080 -51991409 - THE1C LTR MaLR 0 375 1 229 194 0 129 chr12 92291846 92291908 -51990581 + L2 LINE L2 3257 3310 -3 1504 183 23 82 chr12 92292008 92292396 -51990093 + MLT1A1 LTR MaLR 1 365 0 2194 50 60 3 chr12 92292971 92293253 -51989236 - AluY SINE Alu -13 298 1 2133 197 57 70 chr12 92293323 92293933 -51988556 + MER77 LTR ERV1 4 605 0 367 238 12 0 chr12 92294167 92294251 -51988238 - MIR SINE MIR 0 262 178 1880 147 26 38 chr12 92294267 92294608 -51987881 + MER1B DNA MER1_type 1 337 0 22 0 0 0 chr12 92295252 92295274 -51987215 + AT_rich Low_complexity Low_complexity 1 22 0 27 62 0 0 chr12 92295380 92295428 -51987061 + AT_rich Low_complexity Low_complexity 1 48 0 738 171 44 19 chr12 92296233 92296391 -51986098 - L1PA13 LINE L1 -5 6158 5997 2485 48 0 0 chr12 92297044 92297338 -51985151 + AluY SINE Alu 1 294 -17 39 0 0 0 chr12 92297869 92297908 -51984581 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr12 92300346 92300368 -51982121 + AT_rich Low_complexity Low_complexity 1 22 0 275 178 0 0 chr12 92300558 92300603 -51981886 - L2 LINE L2 -19 3294 3250 1409 212 13 69 chr12 92301413 92301790 -51980699 - MLT1A2 LTR MaLR -18 356 1 228 315 56 0 chr12 92303769 92303858 -51978631 - L2 LINE L2 0 3313 3220 203 59 0 29 chr12 92303906 92303940 -51978549 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 2204 53 20 36 chr12 92303945 92304248 -51978241 - L1PA7 LINE L1 -27 6127 5830 240 372 111 14 chr12 92304332 92304707 -51977782 - L2 LINE L2 -193 3079 2667 478 287 34 108 chr12 92304722 92305168 -51977321 + L1ME3A LINE L1 5508 5920 -242 316 224 10 41 chr12 92305867 92305965 -51976524 + L1MC4 LINE L1 6609 6703 -1339 537 158 6 27 chr12 92305980 92306163 -51976326 + (TA)n Simple_repeat Simple_repeat 2 180 0 368 385 76 3 chr12 92306185 92306489 -51976000 - L2 LINE L2 -963 2351 2026 355 327 110 19 chr12 92306500 92306792 -51975697 - LTR16A1 LTR ERVL -15 474 144 2186 111 7 3 chr12 92307623 92307930 -51974559 + AluSg SINE Alu 1 308 -2 679 271 35 87 chr12 92308084 92308431 -51974058 + L2 LINE L2 2985 3313 0 318 293 26 17 chr12 92309330 92309446 -51973043 + LTR67 LTR ERVL 434 550 -7 2482 65 3 0 chr12 92311784 92312094 -51970395 - AluY SINE Alu 0 311 1 425 309 42 52 chr12 92313302 92313493 -51968996 - MIR SINE MIR -6 256 68 263 339 8 0 chr12 92313608 92313729 -51968760 + (TAA)n Simple_repeat Simple_repeat 3 124 0 27 0 0 0 chr12 92313835 92313862 -51968627 + AT_rich Low_complexity Low_complexity 1 27 0 3432 91 12 4 chr12 92314719 92315201 -51967288 + LTR15 LTR ERV1 1 486 -7 1222 199 25 11 chr12 92315254 92315535 -51966954 + L1 LINE L1 4789 5073 -1073 2323 113 8 8 chr12 92315690 92316043 -51966446 - THE1A LTR MaLR -2 353 1 6220 157 49 17 chr12 92316043 92317119 -51965370 + Tigger3b DNA MER2_type 4 1123 -1905 1861 128 17 78 chr12 92317119 92317478 -51965011 + MER1B DNA MER1_type 1 337 0 6220 157 49 17 chr12 92317478 92317591 -51964898 + Tigger3b DNA MER2_type 1123 1231 0 303 303 62 22 chr12 92318164 92318342 -51964147 - L1MDa LINE L1 -3904 2636 2452 289 247 11 34 chr12 92320642 92320731 -51961758 + MIR SINE MIR 176 262 0 343 233 204 0 chr12 92321148 92321251 -51961238 + L2 LINE L2 3188 3311 -2 197 160 0 40 chr12 92321475 92321525 -51960964 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 11094 84 3 7 chr12 92322488 92324004 -51958485 - L1P LINE L1 -4106 2040 532 325 89 0 0 chr12 92324006 92324051 -51958438 + L1PA5 LINE L1 6097 6141 -13 188 35 35 0 chr12 92324054 92324083 -51958406 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 25 0 0 0 chr12 92324099 92324124 -51958365 + AT_rich Low_complexity Low_complexity 1 25 0 718 199 0 22 chr12 92324426 92324562 -51957927 + FLAM_A SINE Alu 1 133 0 1811 126 61 7 chr12 92324580 92324873 -51957616 + AluSg SINE Alu 1 309 -1 22 56 0 0 chr12 92325053 92325089 -51957400 + AT_rich Low_complexity Low_complexity 1 36 0 31 44 0 0 chr12 92325107 92325152 -51957337 + AT_rich Low_complexity Low_complexity 1 45 0 203 391 36 27 chr12 92325366 92325586 -51956903 - L3 LINE CR1 -1085 492 271 183 42 0 0 chr12 92326140 92326164 -51956325 + (A)n Simple_repeat Simple_repeat 1 24 0 6018 51 3 0 chr12 92326164 92327403 -51955086 - L1PA5 LINE L1 -141 6013 4771 254 118 0 23 chr12 92327409 92327466 -51955023 + AluSp/q SINE Alu 256 302 -1 * 1927 199 21 3 chr12 92327456 92327832 -51954657 + Tigger1 DNA MER2_type 2031 2413 -5 215 283 0 17 chr12 92327852 92327912 -51954577 + (TA)n Simple_repeat Simple_repeat 2 60 0 283 333 0 10 chr12 92328045 92328141 -51954348 + L2 LINE L2 1164 1258 -2056 2230 99 0 3 chr12 92328254 92328566 -51953923 - AluY SINE Alu 0 311 1 813 299 110 33 chr12 92328818 92329336 -51953153 + L2 LINE L2 1903 2460 -854 820 149 27 0 chr12 92329378 92329526 -51952963 - L1MB2 LINE L1 -17 6154 6003 1016 249 37 49 chr12 92329526 92329875 -51952614 + L1ME1 LINE L1 5813 6157 -9 1275 331 49 16 chr12 92329918 92330725 -51951764 + L1ME3A LINE L1 5295 6161 -3 204 267 0 17 chr12 92330728 92330788 -51951701 + (TA)n Simple_repeat Simple_repeat 2 60 0 414 0 0 0 chr12 92331331 92331377 -51951112 + (TA)n Simple_repeat Simple_repeat 2 47 0 239 318 0 24 chr12 92331440 92331525 -51950964 + MIR SINE MIR 82 164 -98 1910 97 4 0 chr12 92331791 92332062 -51950427 - AluSp SINE Alu 0 307 36 824 309 58 29 chr12 92332662 92333041 -51949448 + LTR16C LTR ERVL 102 491 0 563 309 50 32 chr12 92333041 92333323 -51949166 + L2 LINE L2 3027 3313 0 679 293 81 70 chr12 92334090 92334554 -51947935 - L1ME3 LINE L1 -10 6152 5677 709 218 7 0 chr12 92334554 92334701 -51947788 + L1MB5 LINE L1 6010 6157 -17 679 293 81 70 chr12 92334701 92334894 -51947595 - L1ME3 LINE L1 -485 5677 5488 298 264 152 0 chr12 92334901 92335026 -51947463 - L1ME3 LINE L1 -729 5441 5298 351 305 53 18 chr12 92335099 92335381 -51947108 - L1ME3 LINE L1 -913 5233 4942 365 344 6 0 chr12 92335420 92335583 -51946906 + (TA)n Simple_repeat Simple_repeat 2 165 0 2225 157 39 7 chr12 92335701 92336116 -51946373 + MSTA LTR MaLR 1 428 0 283 227 148 8 chr12 92336154 92336282 -51946207 - L1MDa LINE L1 -4812 1728 1583 1387 55 22 0 chr12 92336883 92337065 -51945424 - L1PA5 LINE L1 -7 6147 5962 255 240 30 30 chr12 92337325 92337425 -51945064 + L1MCc LINE L1 1368 1467 -4956 1812 190 3 0 chr12 92338906 92339196 -51943293 - AluJb SINE Alu -21 291 1 21 0 0 0 chr12 92339739 92339760 -51942729 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 92340164 92340185 -51942304 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr12 92340897 92340924 -51941565 + (CAT)n Simple_repeat Simple_repeat 1 27 0 245 339 96 9 chr12 92341018 92341133 -51941356 - MIR SINE MIR -136 126 2 240 338 73 22 chr12 92341623 92341759 -51940730 + MER5B DNA MER1_type 36 178 0 22 35 0 0 chr12 92341855 92341884 -51940605 + AT_rich Low_complexity Low_complexity 1 29 0 29 70 0 0 chr12 92342588 92342645 -51939844 + AT_rich Low_complexity Low_complexity 1 57 0 212 163 75 100 chr12 92343197 92343277 -51939212 - MIR SINE MIR -10 252 175 291 250 25 8 chr12 92343722 92343842 -51938647 - Charlie7 DNA MER1_type -69 2543 2422 659 242 140 102 chr12 92343884 92344277 -51938212 + MLT1E3 LTR MaLR 15 455 -169 533 241 35 0 chr12 92344744 92344860 -51937629 + FLAM_A SINE Alu 5 124 -9 189 154 0 0 chr12 92345273 92345312 -51937177 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr12 92345686 92345708 -51936781 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 92345820 92345843 -51936646 + AT_rich Low_complexity Low_complexity 1 23 0 2765 19 0 0 chr12 92345903 92346214 -51936275 - AluYb8 SINE Alu -7 311 1 24 32 0 0 chr12 92346393 92346424 -51936065 + AT_rich Low_complexity Low_complexity 1 31 0 410 338 32 32 chr12 92346961 92347118 -51935371 - L2 LINE L2 -4 3268 3112 1645 201 57 34 chr12 92347138 92347680 -51934809 - MLT2A2 LTR ERVL 0 554 1 285 377 9 9 chr12 92348183 92348289 -51934200 + L2 LINE L2 2968 3073 -199 283 366 23 23 chr12 92349655 92349786 -51932703 - MIR SINE MIR -111 151 21 5335 184 24 25 chr12 92349796 92350596 -51931893 + L1MC1 LINE L1 4891 5692 -641 2087 116 7 7 chr12 92350596 92350899 -51931590 + AluSx SINE Alu 1 303 -9 5335 184 24 25 chr12 92350899 92351536 -51930953 + L1MC1 LINE L1 5692 6328 -5 308 340 69 26 chr12 92351767 92351999 -51930490 + MLT1J LTR MaLR 102 343 -168 1348 323 82 49 chr12 92352641 92353802 -51928687 + L2 LINE L2 2115 3304 -9 22 0 0 0 chr12 92353836 92353858 -51928631 + AT_rich Low_complexity Low_complexity 1 22 0 913 257 113 96 chr12 92353868 92354258 -51928231 + MLT1E LTR MaLR 1 406 -161 485 95 0 48 chr12 92354258 92354342 -51928147 - MADE1 DNA Mariner 0 80 1 913 257 113 96 chr12 92354342 92354503 -51927986 + MLT1E LTR MaLR 406 563 -4 840 177 33 4 chr12 92354596 92354782 -51927707 - L1MB1 LINE L1 -267 5899 5713 251 288 67 100 chr12 92354969 92355268 -51927221 + MLT1J LTR MaLR 223 511 0 1073 303 51 27 chr12 92355561 92356236 -51926253 + L1MDa LINE L1 1770 2510 -4163 1940 134 0 3 chr12 92357613 92357926 -51924563 - AluSx SINE Alu 0 312 1 3700 36 2 0 chr12 92358754 92359203 -51923286 + L1PA4 LINE L1 5706 6155 0 394 357 68 8 chr12 92359733 92359968 -51922521 + MIR SINE MIR 1 249 -13 23 0 0 0 chr12 92360040 92360063 -51922426 + AT_rich Low_complexity Low_complexity 1 23 0 611 201 5 96 chr12 92360600 92360799 -51921690 - L1MA9 LINE L1 -38 6274 6094 5186 148 18 2 chr12 92360843 92361754 -51920735 + L1PA16 LINE L1 5226 6150 -16 1919 160 73 3 chr12 92361863 92362232 -51920257 + L1PA16 LINE L1 5769 6163 -3 2546 36 0 0 chr12 92362273 92362579 -51919910 - L1PA5 LINE L1 -8 6146 5841 217 252 160 25 chr12 92363394 92363513 -51918976 - MIR SINE MIR -54 208 74 24 32 0 0 chr12 92363551 92363582 -51918907 + AT_rich Low_complexity Low_complexity 1 31 0 384 280 109 47 chr12 92363806 92363999 -51918490 - L2 LINE L2 -6 3307 3103 254 247 11 0 chr12 92365036 92365129 -51917360 + (TA)n Simple_repeat Simple_repeat 1 94 0 230 183 50 0 chr12 92365129 92365189 -51917300 - L1MCa LINE L1 -4358 2068 2006 * 245 275 0 22 chr12 92365170 92365261 -51917228 - L1MC4 LINE L1 -1339 6703 6615 211 236 11 11 chr12 92365262 92365351 -51917138 + (TA)n Simple_repeat Simple_repeat 1 89 0 495 277 98 103 chr12 92365979 92366288 -51916201 + L1ME LINE L1 5460 5769 -352 706 183 0 22 chr12 92366441 92366578 -51915911 - FLAM_C SINE Alu -1 142 9 23 33 0 0 chr12 92366612 92366642 -51915847 + AT_rich Low_complexity Low_complexity 1 30 0 315 0 0 0 chr12 92366736 92366771 -51915718 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr12 92367100 92367125 -51915364 + AT_rich Low_complexity Low_complexity 1 25 0 1403 204 130 3 chr12 92367660 92367984 -51914505 - MLT1A1 LTR MaLR 0 365 1 819 360 25 51 chr12 92368496 92369279 -51913210 + L1PA13 LINE L1 788 2286 -5288 4279 262 45 14 chr12 92369545 92371045 -51911444 + L1PA13 LINE L1 2183 3777 -3807 396 0 0 0 chr12 92371045 92371089 -51911400 + (CA)n Simple_repeat Simple_repeat 1 44 0 4279 262 45 14 chr12 92371089 92371476 -51911013 + L1PA13 LINE L1 3777 4151 -3433 1498 145 0 125 chr12 92372770 92373114 -51909375 + AluJb SINE Alu 1 301 -1 24 32 0 0 chr12 92373479 92373510 -51908979 + AT_rich Low_complexity Low_complexity 1 31 0 1978 210 220 82 chr12 92373551 92374448 -51908041 + LTR28 LTR ERV1 1 1020 0 10635 36 9 1 chr12 92374448 92375762 -51906727 + L1PA3 LINE L1 1344 2668 -3478 10270 35 1 0 chr12 92375754 92376995 -51905494 + L1PA3 LINE L1 3430 4671 -1475 * 7476 30 0 0 chr12 92377114 92378155 -51904334 + L1PA3 LINE L1 5131 6171 0 546 274 18 6 chr12 92378300 92378468 -51904021 - L1ME1 LINE L1 -5 6161 5992 347 253 63 35 chr12 92378465 92378639 -51903850 - L1ME1 LINE L1 -894 5252 5074 * 257 233 33 0 chr12 92379356 92379416 -51903073 + L1ME LINE L1 5600 5656 -514 2179 183 34 19 chr12 92379999 92380464 -51902025 + LOR1a LTR ERV1 1 472 -25 22 0 0 0 chr12 92381456 92381478 -51901011 + AT_rich Low_complexity Low_complexity 1 22 0 387 97 79 0 chr12 92382217 92382331 -51900158 + (TA)n Simple_repeat Simple_repeat 2 124 0 4090 163 37 5 chr12 92382593 92383329 -51899160 + Tigger2 DNA MER2_type 1 759 -1959 777 230 67 0 chr12 92383355 92383564 -51898925 + Tigger2 DNA MER2_type 2461 2683 -35 377 270 16 8 chr12 92383581 92383707 -51898782 + (TA)n Simple_repeat Simple_repeat 1 127 0 311 379 98 13 chr12 92383826 92384061 -51898428 + L2 LINE L2 2436 2690 -624 233 210 81 0 chr12 92384340 92384402 -51898087 + L1M4 LINE L1 2954 3020 -3126 322 240 0 16 chr12 92384434 92384555 -51897934 + (TA)n Simple_repeat Simple_repeat 2 120 0 507 319 47 17 chr12 92384767 92385171 -51897318 + L1M4 LINE L1 3347 3762 -2384 186 167 0 0 chr12 92435647 92435683 -51846806 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1987 164 24 16 chr12 92436084 92436456 -51846033 - THE1C LTR MaLR 0 375 1 210 71 0 0 chr12 92438110 92438138 -51844351 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 330 221 117 0 chr12 92438138 92438215 -51844274 - FLAM_C SINE Alu -19 114 29 188 310 42 56 chr12 92438243 92438385 -51844104 - L2 LINE L2 -4 3309 3170 1227 223 37 11 chr12 92438510 92438779 -51843710 + AluJo SINE Alu 7 282 -30 29 28 0 0 chr12 92439301 92439337 -51843152 + AT_rich Low_complexity Low_complexity 1 36 0 198 150 0 0 chr12 92440754 92440794 -51841695 + (T)n Simple_repeat Simple_repeat 1 40 0 1503 45 0 25 chr12 92440795 92440996 -51841493 - L1PA4 LINE L1 -1 6154 5959 556 289 117 64 chr12 92440998 92441375 -51841114 - LTR16B LTR ERVL -65 399 3 816 134 19 0 chr12 92441551 92441708 -51840781 + (TAGA)n Simple_repeat Simple_repeat 3 162 0 25 102 0 0 chr12 92442067 92442155 -51840334 + AT_rich Low_complexity Low_complexity 1 88 0 22 0 0 0 chr12 92442422 92442444 -51840045 + AT_rich Low_complexity Low_complexity 1 22 0 1993 99 48 14 chr12 92442675 92442969 -51839520 + AluSx SINE Alu 1 304 -8 27 62 0 0 chr12 92443908 92443956 -51838533 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr12 92444734 92444755 -51837734 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 92444852 92444881 -51837608 + AT_rich Low_complexity Low_complexity 1 29 0 395 301 96 6 chr12 92444969 92445125 -51837364 + MER69A DNA AcHobo 1 170 -7 349 215 0 0 chr12 92445579 92445644 -51836845 - MLT1F1 LTR MaLR -3 564 500 6040 147 27 9 chr12 92447594 92447682 -51834807 + L1MA4A LINE L1 4936 5021 -1282 1741 91 0 12 chr12 92447682 92447923 -51834566 + AluY SINE Alu 69 306 -5 6040 147 27 9 chr12 92447923 92449175 -51833314 + L1MA4A LINE L1 5021 6296 -7 1099 194 40 0 chr12 92449221 92449422 -51833067 - MER2 DNA MER2_type -135 210 2 3625 161 47 13 chr12 92450229 92450549 -51831940 + L1PB4 LINE L1 5447 5755 -401 180 0 0 0 chr12 92450549 92450569 -51831920 + (CA)n Simple_repeat Simple_repeat 1 20 0 3625 161 47 13 chr12 92450569 92450881 -51831608 + L1PB4 LINE L1 5755 6106 -50 1683 183 133 18 chr12 92450881 92451263 -51831226 + MSTA LTR MaLR 1 426 -2 3625 161 47 13 chr12 92451263 92451313 -51831176 + L1PB4 LINE L1 6106 6153 -3 24 0 0 0 chr12 92451313 92451337 -51831152 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 92451394 92451416 -51831073 + AT_rich Low_complexity Low_complexity 1 22 0 614 293 5 19 chr12 92451421 92451633 -51830856 + L1MEc LINE L1 190 398 -6165 1735 168 7 3 chr12 92451700 92451985 -51830504 - AluJo SINE Alu -26 286 1 1980 206 12 28 chr12 92451994 92452393 -51830096 + MER47B DNA MER2_type 26 418 0 1930 292 33 10 chr12 92452465 92453262 -51829227 + L1MEc LINE L1 478 1292 -5271 266 247 99 43 chr12 92453271 92453433 -51829056 + L1MEc LINE L1 1199 1369 -5015 302 235 6 136 chr12 92453670 92453832 -51828657 + L1MEc LINE L1 1660 1800 -4763 3179 251 32 71 chr12 92453855 92455088 -51827401 + L1M4 LINE L1 16 1200 -5342 22 0 0 0 chr12 92455088 92455110 -51827379 + AT_rich Low_complexity Low_complexity 1 22 0 1043 140 156 208 chr12 92455110 92455553 -51826936 + THE1C LTR MaLR 9 375 0 1086 254 22 0 chr12 92455557 92455876 -51826613 + L1M4 LINE L1 1222 1547 -4995 852 238 89 17 chr12 92455893 92456296 -51826193 + L1M4 LINE L1 2449 2880 -3945 38076 87 4 8 chr12 92456959 92463121 -51819368 + L1PA6 LINE L1 11 6148 -6 434 332 62 47 chr12 92464455 92464591 -51817898 + MIR SINE MIR 38 180 -82 1176 265 115 47 chr12 92464591 92465146 -51817343 - MLT1E LTR MaLR 0 593 1 434 332 62 47 chr12 92465146 92465220 -51817269 + MIR SINE MIR 180 251 -11 1880 141 8 83 chr12 92465758 92465865 -51816624 + MER7A DNA MER2_type 2 115 -2923 255 61 0 0 chr12 92465865 92465898 -51816591 + (TG)n Simple_repeat Simple_repeat 2 34 0 1318 188 17 45 chr12 92465898 92466185 -51816304 - AluJo SINE Alu -29 283 5 1880 141 8 83 chr12 92466185 92466451 -51816038 + MER7A DNA MER2_type 113 346 0 675 228 30 24 chr12 92466598 92466765 -51815724 + MLT1A2 LTR MaLR 12 179 -195 22 0 0 0 chr12 92467066 92467088 -51815401 + AT_rich Low_complexity Low_complexity 1 22 0 743 247 22 17 chr12 92468574 92468752 -51813737 + MLT1A2 LTR MaLR 1 179 -195 223 339 109 11 chr12 92468753 92468927 -51813562 - MIR SINE MIR -44 218 28 22 0 0 0 chr12 92468943 92468965 -51813524 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr12 92469749 92469792 -51812697 + AT_rich Low_complexity Low_complexity 1 43 0 5248 32 0 0 chr12 92470634 92471284 -51811205 - L1P LINE L1 -2819 3327 2678 3912 32 0 0 chr12 92471284 92471737 -51810752 + L1PA3 LINE L1 5691 6152 -3 198 0 0 0 chr12 92471740 92471762 -51810727 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 29 70 0 0 chr12 92472962 92473019 -51809470 + AT_rich Low_complexity Low_complexity 1 57 0 849 234 39 0 chr12 92473027 92473232 -51809257 + L1MB7 LINE L1 5437 5649 -535 1302 193 40 19 chr12 92473235 92473552 -51808937 - MSTD LTR MaLR -2 394 1 2028 221 42 4 chr12 92473552 92474054 -51808435 + L1MB7 LINE L1 5646 6166 -18 364 160 21 11 chr12 92474062 92474156 -51808333 + L1MB7 LINE L1 6073 6167 -17 685 289 75 32 chr12 92474393 92474867 -51807622 + L1ME3A LINE L1 5237 5728 -442 27 29 0 0 chr12 92474948 92474982 -51807507 + AT_rich Low_complexity Low_complexity 1 34 0 399 248 142 50 chr12 92475005 92475223 -51807266 + L1ME3A LINE L1 5929 6166 -4 28 29 0 0 chr12 92475297 92475332 -51807157 + AT_rich Low_complexity Low_complexity 1 35 0 198 283 0 0 chr12 92476533 92476579 -51805910 - L2 LINE L2 -4 3309 3264 350 329 110 45 chr12 92476900 92477018 -51805471 + MLT1H LTR MaLR 13 122 -427 517 153 10 0 chr12 92477018 92477116 -51805373 - L1MA7 LINE L1 0 6291 6193 350 329 110 45 chr12 92477116 92477487 -51805002 + MLT1H LTR MaLR 122 534 -15 285 395 97 13 chr12 92478044 92478272 -51804217 + L2 LINE L2 3025 3271 -1 1312 199 5 124 chr12 92478575 92478963 -51803526 + MLT1A2 LTR MaLR 33 374 0 198 383 57 81 chr12 92479375 92479623 -51802866 + L2 LINE L2 3022 3263 -9 25 51 0 0 chr12 92479647 92479686 -51802803 + AT_rich Low_complexity Low_complexity 1 39 0 298 307 113 50 chr12 92483408 92483832 -51798657 - MLT1J LTR MaLR -58 453 3 188 400 64 8 chr12 92484825 92484950 -51797539 + MIR3 SINE MIR 10 141 -67 1271 109 5 0 chr12 92485248 92485441 -51797048 - L1PA6 LINE L1 -4 6150 5957 380 98 0 0 chr12 92485441 92485492 -51796997 + L1P3 LINE L1 5567 5617 -555 200 227 0 0 chr12 92486228 92486272 -51796217 + (TTAA)n Simple_repeat Simple_repeat 3 46 0 388 223 142 57 chr12 92487680 92487927 -51794562 + L1M4 LINE L1 3112 3379 -2767 196 367 8 67 chr12 92488824 92488944 -51793545 + L2 LINE L2 2960 3072 -241 967 311 66 8 chr12 92488944 92489307 -51793182 + MLT1I LTR MaLR 13 396 -13 669 256 104 102 chr12 92489682 92490142 -51792347 - LTR41 LTR ERVL -6 767 307 612 300 21 11 chr12 92490158 92490348 -51792141 - LTR41 LTR ERVL -581 192 1 193 329 66 0 chr12 92490427 92490503 -51791986 - L2 LINE L2 -786 2528 2448 399 299 14 41 chr12 92490604 92490751 -51791738 - L2 LINE L2 -936 2378 2236 237 239 16 55 chr12 92491380 92491568 -51790921 + A-rich Low_complexity Low_complexity 1 180 0 1811 138 36 0 chr12 92491874 92492150 -51790339 + AluSx SINE Alu 3 288 -24 292 351 169 13 chr12 92492757 92492911 -51789578 + MIR SINE MIR 51 228 -34 1376 205 46 17 chr12 92493288 92493641 -51788848 + AluJb SINE Alu 1 362 0 199 109 0 43 chr12 92494474 92494520 -51787969 + (TTTCC)n Simple_repeat Simple_repeat 4 47 0 2155 85 20 3 chr12 92495584 92495878 -51786611 - AluY SINE Alu -12 299 1 22 70 0 0 chr12 92495894 92495937 -51786552 + AT_rich Low_complexity Low_complexity 1 43 0 307 157 0 0 chr12 92497758 92497809 -51784680 - MADE1 DNA Mariner -29 51 1 839 258 57 12 chr12 92497810 92498058 -51784431 - MER58 DNA MER1_type -2158 262 4 10315 175 18 13 chr12 92498347 92500591 -51781898 + L1PA15-16 LINE L1 2 2235 -4614 234 62 0 0 chr12 92500591 92500623 -51781866 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 10315 175 18 13 chr12 92500623 92501009 -51781480 + L1PA15-16 LINE L1 2235 2424 -4425 2887 111 22 87 chr12 92501009 92501559 -51780930 + MER75 DNA T2_type 1 514 0 10315 175 18 13 chr12 92501559 92501712 -51780777 + L1PA15-16 LINE L1 2424 2575 -4274 3978 236 38 7 chr12 92501728 92502868 -51779621 + L1 LINE L1 2906 4080 -2769 1236 179 60 4 chr12 92502868 92503120 -51779369 + L1PA16 LINE L1 5896 6161 -5 465 281 156 16 chr12 92503389 92503581 -51778908 + MIR SINE MIR 44 262 0 246 193 0 0 chr12 92503642 92503699 -51778790 + (CA)n Simple_repeat Simple_repeat 2 58 0 1870 129 4 4 chr12 92504637 92504917 -51777572 + AluSq SINE Alu 17 296 -17 256 217 267 33 chr12 92505769 92505889 -51776600 - MER5B DNA MER1_type 0 178 31 1048 209 22 7 chr12 92505892 92506165 -51776324 - L1MA4 LINE L1 0 6300 6024 24 53 0 0 chr12 92507843 92507881 -51774608 + AT_rich Low_complexity Low_complexity 1 38 0 870 276 64 93 chr12 92508102 92508617 -51773872 + L2 LINE L2 2094 2593 -721 7552 25 5 0 chr12 92508639 92509525 -51772964 - L1PA3 LINE L1 -3 6152 5263 415 303 0 35 chr12 92509526 92509668 -51772821 + L2 LINE L2 2671 2807 -507 1654 204 22 19 chr12 92509725 92510088 -51772401 + MLT1A1 LTR MaLR 1 364 -1 226 324 166 7 chr12 92510259 92510398 -51772091 + L2 LINE L2 3152 3312 -1 302 257 20 56 chr12 92510537 92510689 -51771800 - MIR SINE MIR -62 146 36 23 0 0 0 chr12 92511002 92511025 -51771464 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr12 92511491 92511522 -51770967 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr12 92511920 92511951 -51770538 + AT_rich Low_complexity Low_complexity 1 31 0 31 26 0 0 chr12 92512450 92512488 -51770001 + AT_rich Low_complexity Low_complexity 1 38 0 544 257 97 24 chr12 92513251 92513457 -51769032 + MIR SINE MIR 28 248 -14 321 122 40 0 chr12 92513462 92513536 -51768953 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 182 378 18 0 chr12 92513591 92513702 -51768787 + L2 LINE L2 968 1080 -2234 581 299 170 17 chr12 92513812 92514223 -51768266 + L2 LINE L2 1188 1661 -1653 498 82 0 0 chr12 92514301 92514374 -51768115 + AluS SINE Alu 1 73 -240 28451 119 21 26 chr12 92514374 92516071 -51766418 - L1PA8 LINE L1 -152 6335 4632 2151 92 0 54 chr12 92516071 92516386 -51766103 - AluY SINE Alu -13 298 1 28451 119 21 26 chr12 92516386 92520965 -51761524 - L1PA8 LINE L1 -1855 4632 8 405 330 139 32 chr12 92520984 92521357 -51761132 + L2 LINE L2 2110 2522 -792 21 0 0 0 chr12 92522053 92522074 -51760415 + AT_rich Low_complexity Low_complexity 1 21 0 496 342 33 55 chr12 92522160 92522490 -51759999 + L1MEd LINE L1 918 1240 -4879 514 276 157 13 chr12 92522580 92523053 -51759436 + L1M4 LINE L1 4408 4950 -1196 743 341 80 9 chr12 92523066 92523415 -51759074 - LTR16A LTR ERVL -58 392 19 24 32 0 0 chr12 92523973 92524004 -51758485 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr12 92524561 92524605 -51757884 + AT_rich Low_complexity Low_complexity 1 44 0 6721 136 18 15 chr12 92524915 92526137 -51756352 + L1MA2 LINE L1 4940 6165 -139 2031 101 14 34 chr12 92526137 92526433 -51756056 + AluSc SINE Alu 1 290 -19 6721 136 18 15 chr12 92526433 92526574 -51755915 + L1MA2 LINE L1 6165 6304 0 25 0 0 0 chr12 92527845 92527870 -51754619 + AT_rich Low_complexity Low_complexity 1 25 0 263 333 0 0 chr12 92527907 92527988 -51754501 + (ATG)n Simple_repeat Simple_repeat 1 81 0 313 301 102 44 chr12 92528100 92528326 -51754163 - L1MC4a LINE L1 -1927 5881 5643 354 129 0 0 chr12 92528549 92528611 -51753878 + (TG)n Simple_repeat Simple_repeat 1 62 0 2273 155 52 9 chr12 92529752 92530177 -51752312 - Tigger2 DNA MER2_type -3 2715 2273 354 215 0 0 chr12 92530168 92530233 -51752256 - Tigger2 DNA MER2_type -2650 68 4 * 1066 88 11 17 chr12 92530236 92530417 -51752072 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3907 156 177 24 chr12 92531395 92532235 -51750254 + Tigger1 DNA MER2_type 1 969 -1449 1136 214 6 77 chr12 92532237 92532550 -51749939 - AluJo SINE Alu -19 293 3 8423 150 29 5 chr12 92532552 92533968 -51748521 + Tigger1 DNA MER2_type 968 2417 -1 26 0 0 0 chr12 92534659 92534685 -51747804 + AT_rich Low_complexity Low_complexity 1 26 0 194 243 215 73 chr12 92534804 92534981 -51747508 - MIR SINE MIR -21 241 40 567 65 32 11 chr12 92535401 92535494 -51746995 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 702 180 7 22 chr12 92536626 92536765 -51745724 - FLAM_C SINE Alu -6 137 1 23 0 0 0 chr12 92536774 92536797 -51745692 + AT_rich Low_complexity Low_complexity 1 23 0 183 42 0 0 chr12 92536928 92536952 -51745537 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 2226 110 48 25 chr12 92537002 92537356 -51745133 + THE1B LTR MaLR 1 362 -2 10993 108 4 9 chr12 92537358 92537725 -51744764 + THE1B-int LTR MaLR 1 368 -1212 1883 166 3 10 chr12 92537725 92538038 -51744451 - AluSx SINE Alu -1 311 1 10993 108 4 9 chr12 92538038 92539258 -51743231 + THE1B-int LTR MaLR 368 1580 0 2149 114 82 18 chr12 92539258 92539600 -51742889 + THE1B LTR MaLR 1 364 0 225 0 0 0 chr12 92539786 92539811 -51742678 + (TATG)n Simple_repeat Simple_repeat 4 28 0 519 141 0 0 chr12 92539830 92539908 -51742581 - AluJ/FLAM SINE Alu -221 91 14 224 371 86 9 chr12 92540001 92540222 -51742267 - L3b LINE CR1 -89 1494 1257 478 88 12 25 chr12 92540674 92540754 -51741735 - L1PB2 LINE L1 -654 5497 5419 4488 82 9 6 chr12 92540755 92541398 -51741091 + L1PB2 LINE L1 5505 6149 -2 22 56 0 0 chr12 92541398 92541434 -51741055 + AT_rich Low_complexity Low_complexity 1 36 0 282 308 11 22 chr12 92541581 92541672 -51740817 - LTR16A1 LTR ERVL -367 90 1 247 224 53 13 chr12 92541679 92541755 -51740734 + L1ME3A LINE L1 5655 5733 -388 21 57 0 0 chr12 92541908 92541943 -51740546 + AT_rich Low_complexity Low_complexity 1 35 0 726 250 35 0 chr12 92541991 92542163 -51740326 - MER45A DNA AcHobo 0 178 1 222 37 0 0 chr12 92543300 92543327 -51739162 + (CA)n Simple_repeat Simple_repeat 1 27 0 30 0 0 0 chr12 92543668 92543698 -51738791 + AT_rich Low_complexity Low_complexity 1 30 0 597 308 58 14 chr12 92543832 92544040 -51738449 - MIR SINE MIR 0 262 46 195 346 52 44 chr12 92544426 92544562 -51737927 + L2 LINE L2 3159 3295 -18 2209 129 33 33 chr12 92544586 92544950 -51737539 + THE1B LTR MaLR 1 364 0 480 146 0 0 chr12 92544972 92545061 -51737428 + (GGAA)n Simple_repeat Simple_repeat 1 89 0 564 253 84 36 chr12 92545501 92545726 -51736763 + L1ME3A LINE L1 5934 6169 -1 690 271 43 0 chr12 92548178 92548388 -51734101 + MER20 DNA MER1_type 1 219 0 550 307 65 71 chr12 92548493 92548785 -51733704 - MLT1G LTR MaLR -7 588 256 1900 160 12 29 chr12 92548785 92549128 -51733361 + MER1B DNA MER1_type 1 337 0 550 307 65 71 chr12 92549128 92549366 -51733123 - MLT1G LTR MaLR -339 256 18 407 281 29 114 chr12 92549394 92549736 -51732753 - MLT1G-int LTR MaLR -31 1340 1028 687 287 55 20 chr12 92550413 92550667 -51731822 - MLT1H1 LTR MaLR -292 263 1 21 0 0 0 chr12 92553404 92553425 -51729064 + AT_rich Low_complexity Low_complexity 1 21 0 994 206 62 13 chr12 92553518 92553933 -51728556 - MLT1B LTR MaLR 0 467 7 463 180 0 74 chr12 92554959 92555081 -51727408 - L1MA8 LINE L1 -226 6065 5953 660 177 57 6 chr12 92555082 92555240 -51727249 + L1MA8 LINE L1 6121 6286 -5 1925 122 6 13 chr12 92555659 92555970 -51726519 - AluSx SINE Alu -3 309 1 23 54 0 0 chr12 92557944 92557981 -51724508 + AT_rich Low_complexity Low_complexity 1 37 0 2038 128 0 0 chr12 92558616 92558906 -51723583 + AluSx SINE Alu 1 290 -22 1467 93 22 4 chr12 92559348 92559574 -51722915 + L1MA3 LINE L1 6076 6305 0 21 0 0 0 chr12 92559574 92559595 -51722894 + AT_rich Low_complexity Low_complexity 1 21 0 24 103 0 0 chr12 92559782 92559869 -51722620 + AT_rich Low_complexity Low_complexity 1 87 0 603 336 41 8 chr12 92561046 92561290 -51721199 - MIR SINE MIR -1 261 10 425 343 53 6 chr12 92561466 92561635 -51720854 + LTR16A LTR ERVL 257 433 -17 255 361 68 53 chr12 92561818 92562464 -51720025 - L1MEd LINE L1 -5374 745 90 3575 120 10 2 chr12 92562477 92562993 -51719496 - MER1A DNA MER1_type -9 520 1 261 0 0 0 chr12 92563632 92563661 -51718828 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1308 232 13 48 chr12 92564654 92565029 -51717460 + MLT1A1 LTR MaLR 4 365 0 254 310 138 69 chr12 92565813 92565958 -51716531 + L3 LINE CR1 1409 1563 -14 * 3605 316 146 40 chr12 92565933 92568756 -51713733 + L2 LINE L2 185 3309 -4 270 0 0 0 chr12 92569341 92569371 -51713118 + (A)n Simple_repeat Simple_repeat 1 30 0 261 119 0 0 chr12 92569657 92569668 -51712821 + (CA)n Simple_repeat Simple_repeat 1 11 -432 1933 160 12 12 chr12 92569668 92570011 -51712478 - MER2 DNA MER2_type 0 344 2 261 119 0 0 chr12 92570011 92570058 -51712431 + (CA)n Simple_repeat Simple_repeat 10 443 0 261 119 0 0 chr12 92570058 92570100 -51712389 + (CA)n Simple_repeat Simple_repeat 1 42 0 26 74 0 0 chr12 92570688 92570742 -51711747 + AT_rich Low_complexity Low_complexity 1 54 0 1769 144 31 0 chr12 92571064 92571355 -51711134 - L1PA16 LINE L1 -9 6157 5858 713 133 92 0 chr12 92571355 92571475 -51711014 + L1P4 LINE L1 5647 5777 -389 255 239 84 0 chr12 92572823 92572894 -51709595 + MLT1H LTR MaLR 457 533 -16 959 156 6 0 chr12 92573175 92573354 -51709135 + (TG)n Simple_repeat Simple_repeat 1 180 0 1161 329 18 27 chr12 92574110 92574624 -51707865 - LTR33 LTR ERVL -12 509 1 349 345 64 0 chr12 92576392 92576502 -51705987 + L2 LINE L2 2635 2751 -563 318 311 169 27 chr12 92577235 92577418 -51705071 + MIR SINE MIR 13 221 -41 22 0 0 0 chr12 92577976 92577998 -51704491 + AT_rich Low_complexity Low_complexity 1 22 0 208 139 0 0 chr12 92580693 92580729 -51701760 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 633 318 52 43 chr12 92580745 92581072 -51701417 - LTR16C LTR ERVL -8 483 154 906 234 15 81 chr12 92582550 92582884 -51699605 - L1M4 LINE L1 -1363 4783 4472 2619 250 70 13 chr12 92582927 92583300 -51699189 + L1ME1 LINE L1 4807 5157 -1009 3105 113 48 16 chr12 92583300 92583795 -51698694 + MER9 LTR ERVK 1 511 0 2619 250 70 13 chr12 92583795 92584709 -51697780 + L1ME1 LINE L1 5157 6161 -5 1423 192 22 99 chr12 92585201 92585613 -51696876 + MLT2C1 LTR ERVL 16 395 -2 453 160 28 9 chr12 92585748 92585854 -51696635 + CT-rich Low_complexity Low_complexity 1 108 0 1441 207 17 7 chr12 92585863 92586153 -51696336 - AluJb SINE Alu -17 295 3 42 65 0 0 chr12 92586173 92586250 -51696239 + AT_rich Low_complexity Low_complexity 1 77 0 1024 222 30 91 chr12 92586269 92586665 -51695824 - MLT1A2 LTR MaLR 0 374 3 26 76 0 13 chr12 92587186 92587235 -51695254 + AT_rich Low_complexity Low_complexity 1 50 -28 2588 67 3 3 chr12 92587235 92587581 -51694908 + L1PA7 LINE L1 5805 6150 -4 26 76 0 13 chr12 92587581 92587610 -51694879 + AT_rich Low_complexity Low_complexity 50 78 0 23 0 0 0 chr12 92588583 92588606 -51693883 + AT_rich Low_complexity Low_complexity 1 23 0 470 296 39 69 chr12 92588608 92588841 -51693648 - MIR SINE MIR -6 256 31 22 0 0 0 chr12 92588903 92588925 -51693564 + AT_rich Low_complexity Low_complexity 1 22 0 5075 186 14 7 chr12 92588992 92590137 -51692352 - L1MA6 LINE L1 -37 6263 5113 2152 186 23 2 chr12 92590134 92590576 -51691913 + L1MA6 LINE L1 4642 5092 -1054 * 219 36 0 0 chr12 92590576 92590604 -51691885 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 436 325 66 14 chr12 92590755 92590967 -51691522 + L1MEc LINE L1 92 314 -6082 867 280 46 3 chr12 92590981 92591311 -51691178 + L1ME1 LINE L1 5819 6162 -4 833 247 40 79 chr12 92591600 92591679 -51690810 - MLT1E1 LTR MaLR -29 625 544 1717 198 47 68 chr12 92591679 92592195 -51690294 - MLT1D LTR MaLR 0 505 1 833 247 40 79 chr12 92592195 92592262 -51690227 - MLT1E1 LTR MaLR -110 544 476 1795 176 3 0 chr12 92592262 92592558 -51689931 - AluJb SINE Alu -15 297 1 833 247 40 79 chr12 92592558 92592773 -51689716 - MLT1E1 LTR MaLR -178 476 257 35053 44 1 2 chr12 92594083 92598417 -51684072 + L1P LINE L1 3 4332 -1814 4225 145 1 3 chr12 92648424 92649087 -51633402 - HERVH LTR ERV1 -2564 5149 4488 2419 120 11 5 chr12 92649090 92649472 -51633017 - HERVH LTR ERV1 -3721 3992 3609 202 172 46 0 chr12 92649817 92649904 -51632585 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 1118 129 0 5 chr12 92649955 92650145 -51632344 + L1MA7 LINE L1 5725 5905 -249 203 59 0 29 chr12 92650283 92650317 -51632172 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2331 163 11 0 chr12 92650324 92650705 -51631784 + MLT1B LTR MaLR 6 390 0 272 271 59 34 chr12 92650705 92650812 -51631677 - MER58C DNA MER1_type -37 178 69 1495 165 41 6 chr12 92651235 92651550 -51630939 - L1MA8 LINE L1 -29 6262 5937 360 225 0 0 chr12 92651599 92651679 -51630810 - L1PA16 LINE L1 -9 6157 6078 439 109 33 87 chr12 92651680 92651772 -51630717 + L1PB4 LINE L1 5803 5889 -267 1675 52 5 0 chr12 92652001 92652212 -51630277 - L1PA4 LINE L1 -11 6144 5933 28 0 0 0 chr12 92652277 92652305 -51630184 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr12 92652428 92652461 -51630028 + (A)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr12 92652482 92652504 -51629985 + AT_rich Low_complexity Low_complexity 1 22 0 908 205 5 0 chr12 92652894 92653094 -51629395 + L1PA4 LINE L1 5955 6155 0 1391 214 10 10 chr12 92653113 92653422 -51629067 + AluSc SINE Alu 1 309 0 2564 135 43 37 chr12 92653995 92654572 -51627917 - MER4E LTR ERV1 0 779 1 804 260 59 62 chr12 92654576 92654731 -51627758 - MER87 LTR ERV1 -2 539 385 2437 39 0 0 chr12 92654731 92655067 -51627422 - AluY SINE Alu 0 338 3 804 260 59 62 chr12 92655067 92655283 -51627206 - MER87 LTR ERV1 -156 385 168 1440 229 0 16 chr12 92655418 92655728 -51626761 + AluJo SINE Alu 1 305 -7 1329 232 40 3 chr12 92655763 92656065 -51626424 + L1MA8 LINE L1 5476 5788 -524 378 0 0 0 chr12 92656083 92656125 -51626364 + (TA)n Simple_repeat Simple_repeat 2 43 0 1203 201 49 30 chr12 92656146 92656163 -51626326 + L1MA8 LINE L1 5776 5791 -500 285 89 0 0 chr12 92656163 92656208 -51626281 + (CA)n Simple_repeat Simple_repeat 2 46 0 1203 201 49 30 chr12 92656208 92656519 -51625970 + L1MA8 LINE L1 5791 6110 -181 360 0 0 0 chr12 92658236 92658276 -51624213 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr12 92659037 92659065 -51623424 + AT_rich Low_complexity Low_complexity 1 28 0 216 200 0 0 chr12 92659234 92659279 -51623210 + A-rich Low_complexity Low_complexity 1 45 0 227 287 20 20 chr12 92659352 92659453 -51623036 + L1MEc LINE L1 1540 1640 -4756 215 329 38 25 chr12 92660197 92660276 -51622213 - MIR SINE MIR -182 80 1 237 331 132 0 chr12 92660373 92660494 -51621995 - L2 LINE L2 -1944 1370 1234 24 53 0 0 chr12 92660938 92660976 -51621513 + AT_rich Low_complexity Low_complexity 1 38 0 30 59 0 0 chr12 92662764 92662815 -51619674 + AT_rich Low_complexity Low_complexity 1 51 0 491 179 122 39 chr12 92663098 92663254 -51619235 + L1MB7 LINE L1 5724 5892 -292 204 67 0 0 chr12 92663794 92663824 -51618665 + (CA)n Simple_repeat Simple_repeat 1 30 0 273 275 99 35 chr12 92663903 92664045 -51618444 - MIR SINE MIR -12 250 100 2742 13 3 0 chr12 92667607 92667916 -51614573 - AluY SINE Alu -1 310 1 229 353 148 19 chr12 92668957 92669229 -51613260 - L2 LINE L2 -230 3042 2726 236 379 81 14 chr12 92669333 92669544 -51612945 + L2 LINE L2 2584 2808 -506 28 29 0 0 chr12 92669846 92669881 -51612608 + AT_rich Low_complexity Low_complexity 1 35 0 36 53 0 0 chr12 92670014 92670071 -51612418 + AT_rich Low_complexity Low_complexity 1 57 0 1524 247 30 2 chr12 92670402 92670807 -51611682 + L1MB3 LINE L1 4408 4823 -1323 1785 169 13 59 chr12 92670831 92671204 -51611285 - MER47A DNA MER2_type -2 364 9 2767 211 56 11 chr12 92671212 92672240 -51610249 + L1MB3 LINE L1 4841 5906 -277 18621 27 1 0 chr12 92672242 92674485 -51608004 + L1P LINE L1 2628 4873 -1273 8093 32 1 1 chr12 92674585 92676336 -51606153 + L1PA3 LINE L1 4404 6154 -1 1109 189 35 25 chr12 92676336 92676619 -51605870 + L1MB3 LINE L1 5894 6181 -2 2483 65 0 24 chr12 92677030 92677367 -51605122 + L1PA6 LINE L1 5823 6151 -3 431 217 9 0 chr12 92677581 92677687 -51604802 + AluSp/q SINE Alu 205 311 -2 2130 91 0 61 chr12 92677687 92678017 -51604472 + AluSp SINE Alu 1 310 -3 625 181 0 0 chr12 92678018 92678134 -51604355 + L1MB2 LINE L1 6054 6169 -2 21 100 0 0 chr12 92678262 92678332 -51604157 + AT_rich Low_complexity Low_complexity 1 70 0 21 36 0 0 chr12 92678399 92678427 -51604062 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 92678856 92678879 -51603610 + AT_rich Low_complexity Low_complexity 1 23 0 203 206 44 15 chr12 92679021 92679089 -51603400 + (TA)n Simple_repeat Simple_repeat 1 70 0 * 235 133 33 17 chr12 92679045 92679105 -51603384 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 1100 192 4 16 chr12 92679312 92679567 -51602922 + L1MA4 LINE L1 6043 6294 -6 21 0 0 0 chr12 92680767 92680788 -51601701 + AT_rich Low_complexity Low_complexity 1 21 0 487 272 0 7 chr12 92680952 92681099 -51601390 - L1MC3 LINE L1 -1291 6494 6349 427 261 22 45 chr12 92681224 92681446 -51601043 - L1MCa LINE L1 -5866 345 3 259 333 27 36 chr12 92682208 92682319 -51600170 - L2 LINE L2 -15 3257 3148 201 39 0 0 chr12 92682666 92682692 -51599797 + (T)n Simple_repeat Simple_repeat 1 26 0 3362 140 72 2 chr12 92683354 92683933 -51598556 + L1MA5 LINE L1 5600 6219 -81 516 103 0 0 chr12 92684305 92684383 -51598106 + L1MA5 LINE L1 6216 6293 -7 21 57 0 0 chr12 92684387 92684422 -51598067 + AT_rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr12 92684523 92684568 -51597921 + AT_rich Low_complexity Low_complexity 1 45 0 292 188 12 12 chr12 92684668 92684753 -51597736 + (CATATA)n Simple_repeat Simple_repeat 4 88 0 419 328 87 18 chr12 92685706 92685935 -51596554 - MIR SINE MIR -15 247 3 12381 33 1 1 chr12 92686044 92688327 -51594162 - L1PA3 LINE L1 0 6155 3882 25 75 0 0 chr12 92689974 92690027 -51592462 + AT_rich Low_complexity Low_complexity 1 53 0 1251 183 72 54 chr12 92690981 92691314 -51591175 - MER44D DNA MER2_type 0 609 1 195 184 0 0 chr12 92691780 92691818 -51590671 + GA-rich Low_complexity Low_complexity 5 42 0 313 300 143 9 chr12 92692094 92692324 -51590165 + L1MC5 LINE L1 6963 7223 -738 399 298 51 0 chr12 92692478 92692656 -51589833 + L1MC5 LINE L1 7305 7491 -470 2057 78 0 21 chr12 92692679 92692963 -51589526 - AluY SINE Alu -18 293 16 22 56 0 0 chr12 92693952 92693988 -51588501 + AT_rich Low_complexity Low_complexity 1 36 0 291 309 53 32 chr12 92694401 92694495 -51587994 - MIR3 SINE MIR -104 104 9 1982 148 40 8 chr12 92696655 92697006 -51585483 - THE1B LTR MaLR -2 362 1 598 235 152 44 chr12 92698123 92698477 -51584012 + MER57A LTR ERV1 34 398 -5 223 301 60 68 chr12 92698510 92698643 -51583846 - L2 LINE L2 -4 3309 3178 2831 142 85 17 chr12 92699918 92700494 -51581995 - L1MA3 LINE L1 0 7724 7110 4583 201 34 12 chr12 92700600 92701683 -51580806 - L1MA3 LINE L1 -814 6751 5645 4142 227 15 4 chr12 92701687 92702672 -51579817 - L1MA3 LINE L1 -2975 4590 3595 998 192 0 0 chr12 92702670 92702837 -51579652 - L1MA3 LINE L1 -6916 649 483 * 2597 204 10 18 chr12 92702864 92703358 -51579131 - L1MA3 LINE L1 -7060 505 16 1760 283 44 10 chr12 92703897 92704604 -51577885 + MER97a DNA MER1_type? 30 760 -134 5072 137 30 11 chr12 92704635 92705863 -51576626 + L1PA13 LINE L1 4916 6159 -4 21 36 0 0 chr12 92705942 92705970 -51576519 + AT_rich Low_complexity Low_complexity 1 28 0 2794 10 0 0 chr12 92706163 92706474 -51576015 - AluYa5 SINE Alu 0 311 1 252 59 0 0 chr12 92706778 92706812 -51575677 + (TAA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr12 92708189 92708211 -51574278 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr12 92708584 92708629 -51573860 + AT_rich Low_complexity Low_complexity 1 45 0 216 274 11 11 chr12 92708796 92708891 -51573598 + T-rich Low_complexity Low_complexity 3 97 0 311 320 33 11 chr12 92708894 92709075 -51573414 + MER97b DNA MER1_type? 868 1052 -1 310 340 98 36 chr12 92709382 92709688 -51572801 + LTR16C LTR ERVL 156 480 -11 26 30 0 0 chr12 92710332 92710365 -51572124 + AT_rich Low_complexity Low_complexity 1 33 0 2145 120 13 3 chr12 92710669 92710977 -51571512 - AluSq SINE Alu -2 311 1 1047 218 102 30 chr12 92711535 92711929 -51570560 + MER110A LTR ERV1 1 422 -46 202 229 0 0 chr12 92712113 92712161 -51570328 + (TA)n Simple_repeat Simple_repeat 1 48 0 643 103 93 0 chr12 92712197 92712294 -51570195 - AluSp/q SINE Alu -13 300 195 370 140 49 7 chr12 92712294 92712437 -51570052 + (TA)n Simple_repeat Simple_repeat 2 150 0 1289 253 51 35 chr12 92712441 92712872 -51569617 + LTR40a LTR ERVL 82 519 0 301 351 63 11 chr12 92713036 92713227 -51569262 - MIR SINE MIR -29 233 33 31 58 0 0 chr12 92714125 92714177 -51568312 + AT_rich Low_complexity Low_complexity 1 52 0 38 68 0 0 chr12 92714231 92714304 -51568185 + AT_rich Low_complexity Low_complexity 1 73 0 25 75 0 0 chr12 92714411 92714464 -51568025 + AT_rich Low_complexity Low_complexity 1 53 0 201 189 44 33 chr12 92714764 92714854 -51567635 + (TTTA)n Simple_repeat Simple_repeat 2 92 0 3151 182 65 47 chr12 92714972 92715756 -51566733 - L1MA10 LINE L1 -29 6305 5508 5119 180 30 15 chr12 92715764 92716913 -51565576 - L1MA5 LINE L1 -1 6299 5110 2020 119 14 0 chr12 92716913 92717232 -51565257 - AluSx SINE Alu 0 323 1 5119 180 30 15 chr12 92717232 92717909 -51564580 - L1MA5 LINE L1 -1190 5110 4445 753 242 119 30 chr12 92717921 92718350 -51564139 - L1MA5 LINE L1 -2659 3487 3021 817 317 62 18 chr12 92718381 92718769 -51563720 + L1PA12 LINE L1 10 414 -7167 254 276 67 19 chr12 92719314 92719419 -51563070 + L1M2 LINE L1 709 818 -6031 427 315 69 39 chr12 92719501 92719761 -51562728 + L1M2 LINE L1 796 1063 -5786 983 273 32 40 chr12 92720009 92720442 -51562047 + L1PA12 LINE L1 1809 2327 -5257 6050 168 11 5 chr12 92720449 92721541 -51560948 + L1PA12 LINE L1 2467 3565 -4019 324 203 27 0 chr12 92721641 92721715 -51560774 - AluS SINE Alu -227 76 1 275 87 43 0 chr12 92721717 92721763 -51560726 + L1PA12 LINE L1 3602 3649 -3935 1022 88 0 7 chr12 92721781 92721917 -51560572 + AluSq/x SINE Alu 1 135 -177 2217 114 0 3 chr12 92721917 92722223 -51560266 + AluSx SINE Alu 1 305 -7 1762 155 0 13 chr12 92722230 92722533 -51559956 + AluSx SINE Alu 1 299 -13 7035 248 36 21 chr12 92722542 92724639 -51557850 + L1 LINE L1 3659 5786 -1798 1873 208 44 7 chr12 92724646 92725097 -51557392 - L1 LINE L1 -1797 4349 3882 195 304 115 40 chr12 92725190 92725338 -51557151 + L2 LINE L2 3114 3272 0 1594 237 62 55 chr12 92725365 92725463 -51557026 - L1 LINE L1 -3136 3010 2914 270 0 0 0 chr12 92725463 92725493 -51556996 + (TG)n Simple_repeat Simple_repeat 1 30 0 1594 237 62 55 chr12 92725493 92726018 -51556471 - L1 LINE L1 -3232 2914 2382 252 247 144 0 chr12 92726393 92726490 -51555999 - HAL1 LINE L1 -894 1613 1503 406 278 48 44 chr12 92726610 92726837 -51555652 - L1ME LINE L1 -652 5495 5268 328 264 350 0 chr12 92726944 92727084 -51555405 + MER5A DNA MER1_type 1 189 0 232 274 155 18 chr12 92727201 92727537 -51554952 - L1ME LINE L1 -1646 4483 4102 319 319 71 71 chr12 92727992 92728524 -51553965 - L1ME LINE L1 -5282 837 306 21 36 0 0 chr12 92728753 92728781 -51553708 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 92729809 92729830 -51552659 + AT_rich Low_complexity Low_complexity 1 21 0 274 338 86 26 chr12 92731174 92731325 -51551164 - MIR SINE MIR -101 161 2 25 0 0 0 chr12 92731747 92731772 -51550717 + AT_rich Low_complexity Low_complexity 1 25 0 345 300 0 30 chr12 92733471 92733571 -51548918 + MER58 DNA MER1_type 9 105 -236 354 163 62 25 chr12 92733628 92733708 -51548781 + MER58 DNA MER1_type 2334 2416 -4 252 338 125 53 chr12 92733972 92734404 -51548085 + L2 LINE L2 2198 2660 -654 2183 260 141 21 chr12 92734513 92735645 -51546844 + L1ME1 LINE L1 3998 5265 -881 885 286 61 33 chr12 92735752 92736263 -51546226 + L1ME1 LINE L1 5263 5787 -379 621 180 16 0 chr12 92736269 92736391 -51546098 - MLT1B LTR MaLR -266 124 1 393 275 61 0 chr12 92736406 92736537 -51545952 + L1ME1 LINE L1 6007 6145 -21 1825 137 44 72 chr12 92737290 92737676 -51544813 + THE1C LTR MaLR 1 375 0 7463 187 68 35 chr12 92737677 92739388 -51543101 + THE1C-int LTR MaLR 2 1651 0 1658 126 37 113 chr12 92739388 92739794 -51542695 + THE1C LTR MaLR 1 375 0 25 51 0 0 chr12 92739816 92739855 -51542634 + AT_rich Low_complexity Low_complexity 1 39 0 2142 110 0 0 chr12 92740081 92740404 -51542085 + AluSx SINE Alu 1 323 0 560 167 0 0 chr12 92741034 92741142 -51541347 - L1MA8 LINE L1 -5 6286 6179 30 69 0 0 chr12 92742875 92742933 -51539556 + AT_rich Low_complexity Low_complexity 1 58 0 2840 13 0 0 chr12 92743056 92743370 -51539119 + AluYb8 SINE Alu 1 314 -4 1314 221 84 3 chr12 92743448 92743756 -51538733 - MER67C LTR ERV1 -307 403 71 1092 38 0 0 chr12 92743787 92743920 -51538569 - L1PA4 LINE L1 -3402 2744 2612 20491 50 1 2 chr12 92743920 92747321 -51535168 + L1PA4 LINE L1 2746 6155 0 1901 139 10 10 chr12 92747339 92747648 -51534841 + AluSc SINE Alu 1 309 0 186 43 0 0 chr12 92748103 92748126 -51534363 + (TG)n Simple_repeat Simple_repeat 1 23 0 360 0 0 0 chr12 92748129 92748169 -51534320 + (TA)n Simple_repeat Simple_repeat 2 41 0 285 89 0 0 chr12 92748209 92748254 -51534235 + (CA)n Simple_repeat Simple_repeat 2 46 0 1014 251 52 54 chr12 92748254 92748700 -51533789 + L1MA9 LINE L1 5794 6238 -74 220 179 0 36 chr12 92748701 92748757 -51533732 + (TA)n Simple_repeat Simple_repeat 1 54 0 25 0 0 0 chr12 92748787 92748812 -51533677 + AT_rich Low_complexity Low_complexity 1 25 0 1270 247 45 11 chr12 92750281 92750662 -51531827 - L1M4 LINE L1 -1192 4954 4561 1648 284 67 39 chr12 92750668 92751598 -51530891 - L1M4 LINE L1 -1466 4680 3725 235 231 0 0 chr12 92751603 92751655 -51530834 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 351 284 39 8 chr12 92751680 92751807 -51530682 - L1M4 LINE L1 -3555 2591 2461 30 0 0 0 chr12 92753355 92753385 -51529104 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 92753658 92753679 -51528810 + AT_rich Low_complexity Low_complexity 1 21 0 392 303 11 93 chr12 92753919 92754125 -51528364 - MLT1J2 LTR MaLR -230 220 25 195 129 0 0 chr12 92754158 92754189 -51528300 + (A)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr12 92754504 92754534 -51527955 + AT_rich Low_complexity Low_complexity 1 30 0 30 0 0 0 chr12 92754773 92754803 -51527686 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 92755762 92755783 -51526706 + AT_rich Low_complexity Low_complexity 1 21 0 706 245 138 18 chr12 92756199 92756583 -51525906 + L1MC2 LINE L1 2049 2478 -3948 1349 119 10 0 chr12 92756609 92756810 -51525679 + L1MA7 LINE L1 5781 5983 -308 558 140 9 0 chr12 92756810 92756917 -51525572 + L1MA7 LINE L1 6184 6291 0 839 263 83 8 chr12 92756917 92756937 -51525552 + L1MC2 LINE L1 2486 2503 -3923 1372 153 63 60 chr12 92756937 92757238 -51525251 - AluJb SINE Alu -10 302 1 839 263 83 8 chr12 92757238 92757551 -51524938 + L1MC2 LINE L1 2503 2847 -3579 6826 226 80 23 chr12 92757630 92757950 -51524539 + L1MC2 LINE L1 2801 3101 -3523 24 0 0 0 chr12 92757950 92757974 -51524515 + AT_rich Low_complexity Low_complexity 1 24 0 2299 62 10 7 chr12 92757974 92758266 -51524223 - AluY SINE Alu -18 293 1 1364 214 0 36 chr12 92758266 92758575 -51523914 - AluJo SINE Alu -14 298 1 6826 226 80 23 chr12 92758575 92761836 -51520653 + L1MC2 LINE L1 3100 6616 -8 3539 49 0 7 chr12 92762813 92763264 -51519225 + LTR7 LTR ERV1 1 448 -2 22809 83 50 28 chr12 92763266 92766724 -51515765 + HERVH LTR ERV1 1 3534 -4179 7234 117 2 18 chr12 92766837 92767988 -51514501 + HERVH LTR ERV1 1864 2995 -4718 6205 84 1 2 chr12 92767967 92768821 -51513668 + HERVH LTR ERV1 3140 3992 -3721 * 4318 139 1 3 chr12 92768824 92769487 -51513002 + HERVH LTR ERV1 4488 5149 -2564 1332 128 22 18 chr12 92769484 92769711 -51512778 + HERVH LTR ERV1 5597 5824 -1889 * 2478 82 45 13 chr12 92769703 92770083 -51512406 + HERVH LTR ERV1 7322 7713 0 3222 70 23 7 chr12 92770083 92770524 -51511965 + LTR7 LTR ERV1 1 448 -2 36 40 0 0 chr12 92770843 92770893 -51511596 + AT_rich Low_complexity Low_complexity 1 50 0 249 33 0 0 chr12 92771219 92771249 -51511240 + (TTA)n Simple_repeat Simple_repeat 3 32 0 25 0 0 0 chr12 92771497 92771522 -51510967 + AT_rich Low_complexity Low_complexity 1 25 0 482 246 16 48 chr12 92772034 92772160 -51510329 - MER5B DNA MER1_type 0 178 57 413 188 0 18 chr12 92772237 92772407 -51510082 + G-rich Low_complexity Low_complexity 1 167 0 23 0 0 0 chr12 92772477 92772500 -51509989 + GC_rich Low_complexity Low_complexity 1 23 0 50 75 0 0 chr12 92772533 92772639 -51509850 + GC_rich Low_complexity Low_complexity 1 106 0 326 0 0 64 chr12 92772758 92772805 -51509684 + (A)n Simple_repeat Simple_repeat 1 44 0 404 283 82 13 chr12 92773521 92773697 -51508792 + MLT1E LTR MaLR 9 197 -370 225 0 0 0 chr12 92774126 92774151 -51508338 + (TG)n Simple_repeat Simple_repeat 2 26 0 360 285 211 12 chr12 92775294 92775536 -51506953 - L1 LINE L1 -1763 4383 4094 1271 263 70 58 chr12 92775539 92776038 -51506451 - LTR40a LTR ERVL -14 505 1 370 318 26 53 chr12 92776040 92776304 -51506185 - L1 LINE L1 -2028 4118 3862 1605 223 111 50 chr12 92776384 92776989 -51505500 + MLT1E1 LTR MaLR 13 654 0 193 354 20 0 chr12 92777305 92777404 -51505085 + L2 LINE L2 3212 3312 -1 330 26 0 0 chr12 92778155 92778194 -51504295 + (TG)n Simple_repeat Simple_repeat 1 39 0 364 296 58 72 chr12 92778210 92778433 -51504056 - L2 LINE L2 -164 3149 2930 342 308 54 19 chr12 92778514 92778818 -51503671 - MLT1H LTR MaLR 0 549 210 19973 171 37 22 chr12 92779197 92781093 -51501396 - L1MA2 LINE L1 0 7723 5857 1333 106 10 24 chr12 92781093 92781301 -51501188 - L1PA11 LINE L1 -10 6164 5960 19973 171 37 22 chr12 92781301 92783241 -51499248 - L1MA2 LINE L1 -1866 5857 3948 309 51 0 0 chr12 92783241 92783280 -51499209 + (TA)n Simple_repeat Simple_repeat 1 39 0 19973 171 37 22 chr12 92783280 92787033 -51495456 - L1MA2 LINE L1 -3775 3948 14 21 0 0 0 chr12 92787037 92787058 -51495431 + AT_rich Low_complexity Low_complexity 1 21 0 374 265 78 92 chr12 92788195 92788540 -51493949 + L1MEc LINE L1 820 1134 -5084 850 237 90 77 chr12 92788575 92788741 -51493748 + L1ME3 LINE L1 5568 5730 -432 5378 132 26 22 chr12 92788741 92789765 -51492724 - L1PA15 LINE L1 -3 6162 5130 850 237 90 77 chr12 92789765 92789986 -51492503 + L1ME3 LINE L1 5730 5960 -202 202 239 0 0 chr12 92790092 92790138 -51492351 + A-rich Low_complexity Low_complexity 1 46 0 321 26 0 0 chr12 92791473 92791511 -51490978 + (TG)n Simple_repeat Simple_repeat 2 39 0 2126 110 0 0 chr12 92791549 92791867 -51490622 - AluSg SINE Alu 0 318 1 456 147 31 16 chr12 92792114 92792243 -51490246 + (TA)n Simple_repeat Simple_repeat 1 131 0 23 33 0 0 chr12 92792849 92792879 -51489610 + AT_rich Low_complexity Low_complexity 1 30 0 4010 35 0 4 chr12 92794120 92794600 -51487889 - L1PA5 LINE L1 0 6154 5677 27078 62 2 4 chr12 92795646 92799144 -51483345 + L1P LINE L1 3 3493 -2653 874 194 41 25 chr12 92800217 92800413 -51482076 - MER3 DNA MER1_type 0 209 11 4331 128 16 16 chr12 92800415 92801111 -51481378 + HSMAR2 DNA Mariner 606 1301 -1 377 323 44 19 chr12 92801280 92801438 -51481051 + L2 LINE L2 3150 3311 -2 180 77 0 0 chr12 92801601 92801627 -51480862 + (CA)n Simple_repeat Simple_repeat 1 26 0 39 84 0 0 chr12 92801662 92801757 -51480732 + AT_rich Low_complexity Low_complexity 1 95 0 14423 38 18 0 chr12 92803060 92805603 -51476886 - L1PA4 LINE L1 -1 6154 3577 439 109 33 87 chr12 92805781 92805873 -51476616 + L1PB4 LINE L1 5803 5889 -267 1675 52 5 0 chr12 92806102 92806313 -51476176 - L1PA4 LINE L1 -11 6144 5933 28 0 0 0 chr12 92806378 92806406 -51476083 + AT_rich Low_complexity Low_complexity 1 28 0 315 42 0 62 chr12 92806529 92806577 -51475912 + (A)n Simple_repeat Simple_repeat 1 45 0 268 368 33 13 chr12 92807488 92807640 -51474849 - MIR SINE MIR -48 214 60 26 30 0 0 chr12 92808163 92808196 -51474293 + AT_rich Low_complexity Low_complexity 1 33 0 1775 269 82 1 chr12 92808541 92809232 -51473257 + L1M4 LINE L1 4600 5346 -800 546 219 58 50 chr12 92809317 92809615 -51472874 - MER61D LTR ERV1 -15 753 344 1118 218 125 48 chr12 92809791 92810168 -51472321 - MSTB1 LTR MaLR -2 430 25 540 296 59 0 chr12 92810742 92810894 -51471595 - MER69A DNA AcHobo -15 162 2 5266 164 32 24 chr12 92811063 92812097 -51470392 - L1MC1 LINE L1 -9 6324 5283 30 27 0 0 chr12 92812220 92812257 -51470232 + AT_rich Low_complexity Low_complexity 1 37 0 1057 214 53 40 chr12 92812406 92812709 -51469780 - L1MD2 LINE L1 0 6359 6053 680 182 34 141 chr12 92813918 92814215 -51468274 + L1MC4 LINE L1 7778 8042 0 241 336 69 17 chr12 92814398 92814514 -51467975 + L2 LINE L2 2554 2675 -639 336 48 0 0 chr12 92815177 92815219 -51467270 + (CA)n Simple_repeat Simple_repeat 1 42 0 29 0 0 0 chr12 92815283 92815312 -51467177 + AT_rich Low_complexity Low_complexity 1 29 0 197 341 88 0 chr12 92815316 92815407 -51467082 + MIR SINE MIR 63 161 -101 449 324 144 14 chr12 92816376 92816598 -51465891 - MIR SINE MIR -9 253 3 4367 161 25 18 chr12 92816712 92817505 -51464984 + L1MB2 LINE L1 5320 6118 -53 14613 203 57 10 chr12 92818792 92820535 -51461954 - L1PB1 LINE L1 0 6867 5207 432 0 0 0 chr12 92820535 92820583 -51461906 + (TTA)n Simple_repeat Simple_repeat 2 49 0 14613 203 57 10 chr12 92820583 92825384 -51457105 - L1PB1 LINE L1 -1660 5207 6 1061 122 13 130 chr12 92825399 92825637 -51456852 - MER101B LTR ERV1 -360 210 1 1430 209 3 62 chr12 92826880 92827205 -51455284 + AluJo SINE Alu 1 306 -6 2192 133 0 0 chr12 92828658 92828967 -51453522 + AluSc SINE Alu 1 309 0 320 311 63 72 chr12 92829341 92829637 -51452852 + L1M4 LINE L1 4878 5172 -974 261 0 0 0 chr12 92829637 92829666 -51452823 + (CA)n Simple_repeat Simple_repeat 2 30 0 320 311 63 72 chr12 92829666 92829732 -51452757 + L1M4 LINE L1 5172 5237 -909 26 0 0 0 chr12 92829943 92829969 -51452520 + AT_rich Low_complexity Low_complexity 1 26 0 27 62 0 0 chr12 92830754 92830802 -51451687 + AT_rich Low_complexity Low_complexity 1 48 0 2166 111 3 10 chr12 92831244 92831550 -51450939 + AluSp SINE Alu 1 304 -9 220 374 81 16 chr12 92832008 92832131 -51450358 + L2 LINE L2 3134 3264 -8 23 54 0 0 chr12 92832154 92832191 -51450298 + AT_rich Low_complexity Low_complexity 1 37 0 572 284 35 25 chr12 92832403 92832600 -51449889 - MIR SINE MIR -3 259 61 21 0 0 0 chr12 92833598 92833619 -51448870 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 92833998 92834027 -51448462 + AT_rich Low_complexity Low_complexity 1 29 0 1271 241 39 35 chr12 92834547 92834922 -51447567 - MLT1B LTR MaLR -5 621 8 380 202 140 26 chr12 92834923 92835037 -51447452 - MLT1B-int LTR MaLR -8 1727 1601 5449 100 8 8 chr12 92835053 92835852 -51446637 - L1PB2 LINE L1 -2 6149 5351 1640 226 17 20 chr12 92835854 92836212 -51446277 - MLT1B-int LTR MaLR -117 1618 1262 292 281 0 0 chr12 92836288 92836370 -51446119 - MLT1B-int LTR MaLR -968 767 686 1688 234 20 10 chr12 92836506 92836899 -51445590 - MLT1B-int LTR MaLR -653 718 322 921 189 12 18 chr12 92836901 92837065 -51445424 + AluJb SINE Alu 132 294 -18 1476 214 28 3 chr12 92837066 92837388 -51445101 - MLT1B-int LTR MaLR -1040 331 2 754 249 96 93 chr12 92837391 92837757 -51444732 - MLT1B LTR MaLR -4 370 4 459 204 43 80 chr12 92837757 92837919 -51444570 - L1M3 LINE L1 -435 5748 5593 191 361 16 0 chr12 92837925 92837986 -51444503 - L2 LINE L2 -23 3290 3229 1933 164 8 46 chr12 92838085 92838475 -51444014 - THE1C LTR MaLR 0 375 1 9554 128 18 48 chr12 92838475 92840074 -51442415 - THE1C-int LTR MaLR 0 1580 29 866 180 20 72 chr12 92840080 92840405 -51442084 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr12 92841011 92841037 -51441452 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 92841461 92841483 -51441006 + AT_rich Low_complexity Low_complexity 1 22 0 1081 188 31 22 chr12 92844166 92844390 -51438099 + AluJo SINE Alu 72 297 -15 270 165 24 35 chr12 92844405 92844490 -51437999 + GA-rich Low_complexity Low_complexity 3 86 0 37227 88 9 12 chr12 92844600 92850760 -51431729 + L1PA5 LINE L1 11 6154 0 221 370 121 34 chr12 92851005 92851270 -51431219 - L2 LINE L2 -634 2680 2393 187 216 27 0 chr12 92851684 92851721 -51430768 - L2 LINE L2 -4 3268 3231 644 193 83 17 chr12 92852450 92852631 -51429858 - L1MA8 LINE L1 -68 6223 6031 411 335 109 14 chr12 92852724 92853073 -51429416 + L1ME3A LINE L1 5540 5921 -241 210 37 0 0 chr12 92853145 92853172 -51429317 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 205 200 0 0 chr12 92854699 92854739 -51427750 + (TA)n Simple_repeat Simple_repeat 2 41 0 316 125 71 0 chr12 92854810 92854866 -51427623 + Tigger2 DNA MER2_type 1 60 -2658 2123 153 56 39 chr12 92854872 92855131 -51427358 + Tigger2 DNA MER2_type 2280 2533 -185 2428 106 6 14 chr12 92855131 92855488 -51427001 + THE1A LTR MaLR 2 355 0 11029 105 17 1 chr12 92855488 92857043 -51425446 + THE1A-int LTR MaLR 1 1580 0 2212 119 6 30 chr12 92857045 92857407 -51425082 + THE1A LTR MaLR 3 355 0 2123 153 56 39 chr12 92857407 92857574 -51424915 + Tigger2 DNA MER2_type 2533 2717 -1 398 228 36 36 chr12 92857883 92858050 -51424439 + L1M4 LINE L1 2851 3017 -3129 462 296 67 52 chr12 92858329 92858599 -51423890 - L2 LINE L2 -4 3309 3036 362 274 55 109 chr12 92858633 92858834 -51423655 + L2 LINE L2 2257 2446 -868 271 304 6 19 chr12 92859020 92859178 -51423311 + (TA)n Simple_repeat Simple_repeat 2 157 0 2066 114 3 0 chr12 92859391 92859698 -51422791 - L1PA13 LINE L1 -4 6159 5852 472 309 125 15 chr12 92859764 92860101 -51422388 + L1M4 LINE L1 2936 3309 -2837 238 310 60 22 chr12 92860287 92860519 -51421970 + L1M4 LINE L1 3924 4164 -1982 613 320 34 4 chr12 92860537 92860771 -51421718 + L1MEc LINE L1 29 269 -6127 371 305 151 40 chr12 92860891 92861436 -51421053 + L1M4 LINE L1 4243 4847 -1299 296 280 41 18 chr12 92861902 92862084 -51420405 + L1PA8A LINE L1 5326 5510 -621 2310 97 3 3 chr12 92862202 92862512 -51419977 + AluSp SINE Alu 1 310 -3 239 77 0 26 chr12 92862708 92862747 -51419742 + (TA)n Simple_repeat Simple_repeat 1 38 0 1599 201 0 3 chr12 92863003 92863317 -51419172 + AluSq SINE Alu 1 313 0 218 116 23 0 chr12 92863805 92863848 -51418641 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 213 330 189 9 chr12 92864564 92864670 -51417819 + L2 LINE L2 3145 3269 -3 22 70 0 0 chr12 92864826 92864869 -51417620 + AT_rich Low_complexity Low_complexity 1 43 0 636 68 0 0 chr12 92864968 92865056 -51417433 + L1P LINE L1 3600 3687 -2459 1213 244 106 14 chr12 92865391 92865751 -51416738 + MLT1J2 LTR MaLR 1 393 -57 12684 21 0 0 chr12 92865757 92868011 -51414478 - L1PA2 LINE L1 0 6155 3902 284 220 17 0 chr12 92868145 92868204 -51414285 - MLT1H LTR MaLR -382 167 108 1198 94 19 0 chr12 92868365 92868524 -51413965 - AluSq SINE Alu -151 162 1 24 0 0 0 chr12 92869606 92869630 -51412859 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 92870403 92870432 -51412057 + AT_rich Low_complexity Low_complexity 1 29 0 317 269 101 8 chr12 92870755 92870874 -51411615 + MLT1J2 LTR MaLR 420 549 0 528 131 12 0 chr12 92871030 92871114 -51411375 + MER61E LTR ERV1 1 85 -484 243 222 143 0 chr12 92871305 92871368 -51411121 + MER51A LTR ERV1 209 280 -354 * 1103 175 66 129 chr12 92871339 92871734 -51410755 + LTR25 LTR ERV1 415 784 -10 2300 87 0 16 chr12 92871745 92872055 -51410434 - AluY SINE Alu -6 305 1 2866 174 43 2 chr12 92872224 92872717 -51409772 + MLT2B1 LTR ERVL 1 513 -7 30 45 0 0 chr12 92872747 92872791 -51409698 + AT_rich Low_complexity Low_complexity 1 44 0 272 258 152 45 chr12 92873002 92873134 -51409355 + L3 LINE CR1 611 756 -821 834 313 170 11 chr12 92874312 92874776 -51407713 + L2 LINE L2 2075 2612 -702 454 226 73 51 chr12 92874848 92874985 -51407504 + L2 LINE L2 3172 3311 -2 191 290 16 16 chr12 92875789 92875851 -51406638 + L2 LINE L2 3242 3303 -10 1833 140 3 54 chr12 92875861 92876176 -51406313 - AluSg SINE Alu -11 299 1 232 262 0 0 chr12 92876403 92876464 -51406025 + MARNA DNA Mariner 210 270 -316 181 301 43 54 chr12 92876464 92876557 -51405932 - L2 LINE L2 -18 3295 3204 405 39 0 0 chr12 92876588 92876639 -51405850 + (TG)n Simple_repeat Simple_repeat 1 51 0 1965 132 55 25 chr12 92876766 92877130 -51405359 - THE1C LTR MaLR 0 375 1 1056 212 125 24 chr12 92877131 92877546 -51404943 + L1MEc LINE L1 726 1182 -5214 363 227 83 61 chr12 92877925 92878057 -51404432 - L1MA10 LINE L1 -8 6326 6192 7668 40 0 1 chr12 92878186 92879129 -51403360 - L1PA3 LINE L1 -985 5161 4220 7516 33 1 1 chr12 92879129 92880152 -51402337 + L1PA3 LINE L1 5133 6155 0 2145 263 56 15 chr12 92880162 92880973 -51401516 - L1ME1 LINE L1 -248 5918 5075 2101 240 33 55 chr12 92880994 92881850 -51400639 - L1ME1 LINE L1 -1371 4775 3937 1688 198 0 0 chr12 92881850 92882143 -51400346 + AluSx SINE Alu 1 293 -19 2101 240 33 55 chr12 92882143 92882157 -51400332 - L1ME1 LINE L1 -2209 3937 3924 295 211 28 0 chr12 92882154 92882225 -51400264 - L1M4 LINE L1 -1459 4756 4684 * 3467 275 55 25 chr12 92882226 92884006 -51398483 - L1MEc LINE L1 -3668 2547 738 1349 306 74 24 chr12 92884008 92884630 -51397859 - L1MEc LINE L1 -5708 688 36 1658 201 52 11 chr12 92884901 92885265 -51397224 - MLT1B LTR MaLR -2 388 10 22 0 0 0 chr12 92885265 92885287 -51397202 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chr12 92885349 92885395 -51397094 + AT_rich Low_complexity Low_complexity 1 46 0 1355 194 7 11 chr12 92885523 92885796 -51396693 + L1PB4 LINE L1 5882 6153 -3 294 50 0 0 chr12 92885817 92885857 -51396632 + (CA)n Simple_repeat Simple_repeat 1 40 0 293 299 175 38 chr12 92885889 92886100 -51396389 + MIR SINE MIR 23 262 0 306 234 39 0 chr12 92886207 92886284 -51396205 + MLT2E LTR ERVL 34 113 -515 1948 140 0 0 chr12 92886622 92886908 -51395581 + AluSx SINE Alu 1 286 -26 1771 208 49 64 chr12 92886994 92887460 -51395029 - LTR42 LTR ERVL -29 466 8 267 348 87 0 chr12 92887567 92887682 -51394807 - MIR SINE MIR -101 161 37 633 332 66 28 chr12 92888025 92888420 -51394069 - MLT1J2 LTR MaLR -4 446 37 229 338 134 6 chr12 92888729 92888886 -51393603 - MIR SINE MIR -81 181 5 3238 97 25 41 chr12 92889056 92889571 -51392918 + MER9 LTR ERVK 1 507 -4 901 229 9 28 chr12 92890712 92890930 -51391559 + LTR52 LTR ERVL 4 217 -204 1748 207 31 11 chr12 92890934 92891292 -51391197 + MLT1A1 LTR MaLR 1 365 0 570 194 44 75 chr12 92891305 92891465 -51391024 + LTR52 LTR ERVL 242 396 -25 1255 189 35 0 chr12 92891941 92892168 -51390321 - MER46A DNA MER2_type -1 235 1 23 68 0 0 chr12 92892246 92892290 -51390199 + AT_rich Low_complexity Low_complexity 1 44 0 264 299 58 29 chr12 92892355 92892529 -51389960 + L1MC4 LINE L1 7791 7969 -73 518 319 8 34 chr12 92893554 92893789 -51388700 + MER110 LTR ERV1 185 413 -78 26 0 0 0 chr12 92894283 92894309 -51388180 + AT_rich Low_complexity Low_complexity 1 26 0 1891 168 20 17 chr12 92896063 92896408 -51386081 - MER7A DNA MER2_type -1 345 2 300 331 53 0 chr12 92896675 92896808 -51385681 + MIR SINE MIR 122 261 -1 21 36 0 0 chr12 92897071 92897099 -51385390 + AT_rich Low_complexity Low_complexity 1 28 0 1303 226 63 13 chr12 92897277 92897595 -51384894 - MER58B DNA MER1_type -7 334 1 200 143 71 18 chr12 92898202 92898258 -51384231 + L2 LINE L2 2644 2702 -612 246 334 72 25 chr12 92898935 92899118 -51383371 + MIR SINE MIR 2 196 -62 2207 105 0 22 chr12 92900436 92900749 -51381740 + AluSc SINE Alu 1 306 -3 546 271 90 21 chr12 92900965 92901153 -51381336 - MIR SINE MIR 0 262 62 574 299 104 25 chr12 92903593 92903911 -51378578 - MLT1H LTR MaLR 0 549 207 568 272 144 9 chr12 92904061 92904431 -51378058 + L1ME4a LINE L1 5638 6073 -48 1544 154 74 44 chr12 92904431 92904795 -51377694 + THE1C LTR MaLR 1 375 0 568 272 144 9 chr12 92904795 92904847 -51377642 + L1ME4a LINE L1 6073 6117 -4 1875 229 96 69 chr12 92904880 92905093 -51377396 + MLT1E1 LTR MaLR 1 207 -447 1922 140 18 0 chr12 92905093 92905379 -51377110 + AluSx SINE Alu 7 297 -15 1875 229 96 69 chr12 92905379 92905789 -51376700 + MLT1E1 LTR MaLR 207 641 -13 252 327 10 0 chr12 92906319 92906423 -51376066 - MER117 DNA MER1_type -82 115 11 498 280 25 45 chr12 92906849 92907006 -51375483 + MER5A DNA MER1_type 2 155 -34 1218 54 0 7 chr12 92908617 92908765 -51373724 + AluY SINE Alu 1 147 -164 1526 64 0 5 chr12 92908767 92908971 -51373518 + AluY SINE Alu 109 311 0 236 389 30 20 chr12 92909013 92909216 -51373273 - L2 LINE L2 -514 2800 2596 464 311 34 34 chr12 92909590 92909828 -51372661 + L2 LINE L2 2243 2480 -834 22 0 0 0 chr12 92911494 92911516 -51370973 + AT_rich Low_complexity Low_complexity 1 22 0 947 250 0 0 chr12 92911745 92911941 -51370548 + MER58A DNA MER1_type 29 224 0 1453 192 152 8 chr12 92912262 92912805 -51369684 - MER97b DNA MER1_type? -174 879 206 213 154 0 0 chr12 92913515 92913554 -51368935 + T-rich Low_complexity Low_complexity 1 39 0 351 0 0 0 chr12 92913758 92913797 -51368692 + (TG)n Simple_repeat Simple_repeat 1 39 0 22 35 0 0 chr12 92915307 92915336 -51367153 + AT_rich Low_complexity Low_complexity 1 29 0 241 307 79 18 chr12 92917373 92917487 -51365002 + MIR SINE MIR 28 148 -114 26 0 0 0 chr12 92917836 92917862 -51364627 + AT_rich Low_complexity Low_complexity 1 26 0 2130 124 0 3 chr12 92917932 92918231 -51364258 - AluSx SINE Alu -14 298 1 324 70 0 0 chr12 92918420 92918463 -51364026 + (TG)n Simple_repeat Simple_repeat 1 43 0 1020 77 65 0 chr12 92918834 92918989 -51363500 + L1PA13 LINE L1 5999 6163 0 559 271 119 53 chr12 92919173 92919602 -51362887 - L2 LINE L2 -1 3312 2555 325 330 70 0 chr12 92919660 92919775 -51362714 + MER5A DNA MER1_type 67 189 0 25 0 0 0 chr12 92920330 92920355 -51362134 + AT_rich Low_complexity Low_complexity 1 25 0 1492 265 38 17 chr12 92921880 92922302 -51360187 - LTR40a LTR ERVL -19 500 70 1092 210 18 92 chr12 92922426 92922807 -51359682 - MLT1A1 LTR MaLR -12 353 1 342 0 0 0 chr12 92922991 92923029 -51359460 + (CA)n Simple_repeat Simple_repeat 1 38 0 212 363 48 8 chr12 92923835 92923959 -51358530 - MIR SINE MIR -61 147 19 339 291 78 53 chr12 92923979 92924185 -51358304 - MIR SINE MIR 0 262 52 260 313 74 34 chr12 92925699 92925875 -51356614 - MLT1H LTR MaLR -13 536 354 2445 116 34 0 chr12 92925876 92926254 -51356235 + HSMAR1 DNA Mariner 1 391 -896 1556 178 44 3 chr12 92926848 92927146 -51355343 - AluSx SINE Alu -2 310 1 231 61 0 0 chr12 92927985 92928018 -51354471 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 56 0 0 chr12 92928471 92928507 -51353982 + AT_rich Low_complexity Low_complexity 1 36 0 197 353 17 59 chr12 92929030 92929149 -51353340 + L2 LINE L2 3199 3312 -1 2194 213 58 0 chr12 92929284 92929749 -51352740 - MLT1D LTR MaLR 0 505 14 289 305 94 23 chr12 92930732 92930860 -51351629 - MER69 DNA AcHobo -2388 138 2 247 314 41 8 chr12 92931494 92931615 -51350874 + L1MEd LINE L1 53 177 -5942 529 129 11 0 chr12 92932218 92932311 -51350178 + L1MA8 LINE L1 6194 6287 -4 683 221 65 125 chr12 92932525 92932982 -51349507 - MER34B LTR ERV1 -126 416 5 195 214 92 31 chr12 92932992 92933090 -51349399 - MER5C DNA MER1_type -24 300 197 216 294 39 39 chr12 92933239 92933341 -51349148 - MER5A DNA MER1_type -86 103 2 2643 182 67 14 chr12 92934859 92935425 -51347064 - L1PA16 LINE L1 -1 6165 5570 1916 172 120 3 chr12 92935434 92935817 -51346672 - MSTA LTR MaLR 0 428 1 2632 220 28 74 chr12 92935836 92936757 -51345732 - L1 LINE L1 -2182 4666 3788 278 224 0 0 chr12 92936749 92936816 -51345673 - L1 LINE L1 -3312 3536 3470 * 668 366 81 23 chr12 92936929 92937486 -51345003 - L1 LINE L1 -6251 598 10 2457 58 3 0 chr12 92937631 92937941 -51344548 - AluY SINE Alu 0 311 1 361 373 144 4 chr12 92938047 92938310 -51344179 - L2 LINE L2 -48 3224 2925 301 363 73 59 chr12 92939177 92939599 -51342890 - L2 LINE L2 -2 3270 2843 489 257 84 79 chr12 92940684 92940898 -51341591 + MER20 DNA MER1_type 1 215 -4 1486 199 65 24 chr12 92942703 92943074 -51339415 + MLT1B LTR MaLR 5 390 0 458 310 80 10 chr12 92944210 92944410 -51338079 - MIR SINE MIR 0 262 49 235 407 26 16 chr12 92944828 92945017 -51337472 + L2 LINE L2 2773 2963 -351 2176 122 7 0 chr12 92945305 92945608 -51336881 + AluSc SINE Alu 1 305 -4 1143 259 76 11 chr12 92946234 92946604 -51335885 + L1ME2 LINE L1 5528 5921 -243 1187 230 47 3 chr12 92946921 92947217 -51335272 - L1MA8 LINE L1 -2 6289 5981 4042 186 32 49 chr12 92947495 92948428 -51334061 - L1MC1 LINE L1 0 6333 5417 289 267 60 0 chr12 92948446 92948562 -51333927 - L1MC1 LINE L1 -2461 3685 3563 353 250 32 8 chr12 92948725 92948849 -51333640 + Cheshire DNA MER1_type 42 168 -2252 * 1662 206 77 20 chr12 92948837 92949240 -51333249 + Cheshire DNA MER1_type 320 745 -1675 1219 201 77 22 chr12 92949238 92949562 -51332927 + Cheshire DNA MER1_type 2031 2372 -48 * 2957 190 37 23 chr12 92949843 92950671 -51331818 - L1M3 LINE L1 -666 5502 4657 1250 221 4 15 chr12 92950753 92951024 -51331465 - AluJo SINE Alu -44 268 1 620 212 0 0 chr12 92951039 92951185 -51331304 - L1M3 LINE L1 -1481 4665 4520 1818 208 14 3 chr12 92951189 92951555 -51330934 + L1MA9 LINE L1 5539 5908 -404 460 69 100 6 chr12 92952314 92952474 -51330015 + (TA)n Simple_repeat Simple_repeat 2 176 0 1531 266 146 4 chr12 92952619 92953097 -51329392 + MLT1G1 LTR MaLR 48 593 -2 217 273 36 64 chr12 92953102 92953212 -51329277 - MIR SINE MIR -109 153 47 * 418 259 42 69 chr12 92953211 92953427 -51329062 - MIR SINE MIR -45 217 8 255 324 10 29 chr12 92954124 92954226 -51328263 + MIR SINE MIR 15 114 -148 698 190 29 0 chr12 92954247 92954384 -51328105 - MLT1A1 LTR MaLR -220 145 5 23 68 0 0 chr12 92955729 92955773 -51326716 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr12 92956158 92956182 -51326307 + AT_rich Low_complexity Low_complexity 1 24 0 239 284 135 0 chr12 92956286 92956360 -51326129 + MER63 DNA MER1_type 9 718 -118 23 33 0 0 chr12 92957537 92957567 -51324922 + AT_rich Low_complexity Low_complexity 1 30 0 190 268 0 0 chr12 92958005 92958046 -51324443 + MIR SINE MIR 48 88 -174 454 212 73 0 chr12 92958075 92958155 -51324334 - MER53 DNA DNA -29 160 87 2265 57 3 20 chr12 92958155 92958455 -51324034 + AluY SINE Alu 1 295 -16 454 212 73 0 chr12 92958455 92958511 -51323978 - MER53 DNA DNA -102 87 14 21 36 0 0 chr12 92959331 92959359 -51323130 + AT_rich Low_complexity Low_complexity 1 28 0 1467 212 40 53 chr12 92959790 92960168 -51322321 - MLT1A2 LTR MaLR 0 374 2 21 0 0 0 chr12 92960460 92960481 -51322008 + AT_rich Low_complexity Low_complexity 1 21 0 247 371 48 27 chr12 92960583 92960769 -51321720 - L3 LINE CR1 -714 863 674 340 252 0 39 chr12 92962045 92962148 -51320341 + MIR SINE MIR 26 124 -138 391 125 25 38 chr12 92962438 92962518 -51319971 - L1MB1 LINE L1 -5 6163 6085 25 0 0 0 chr12 92962618 92962643 -51319846 + AT_rich Low_complexity Low_complexity 1 25 0 833 226 73 45 chr12 92962989 92963202 -51319287 + MER114 LTR ERV 212 418 -230 2404 70 0 13 chr12 92963202 92963514 -51318975 + AluY SINE Alu 4 311 0 833 226 73 45 chr12 92963514 92963725 -51318764 + MER114 LTR ERV 418 648 0 398 183 12 0 chr12 92963959 92964041 -51318448 + L1PB4 LINE L1 6074 6156 0 1379 124 13 0 chr12 92964419 92964653 -51317836 - L1MA3 LINE L1 -1 6304 6068 768 178 2 0 chr12 92964781 92964916 -51317573 - LTR28 LTR ERV1 -904 116 1 4253 179 30 0 chr12 92964916 92965715 -51316774 + L1MC2 LINE L1 5361 6183 -161 565 253 6 6 chr12 92965735 92965909 -51316580 + L1M4 LINE L1 4773 4946 -1200 466 159 35 44 chr12 92965930 92966043 -51316446 + L1MC2 LINE L1 6225 6336 -8 1631 311 100 25 chr12 92966113 92967074 -51315415 + L2 LINE L2 1707 2809 -505 748 221 129 8 chr12 92967108 92967348 -51315141 - MER33 DNA MER1_type -54 270 2 319 368 66 0 chr12 92967370 92967522 -51314967 + L2 LINE L2 2820 2981 -332 338 141 0 16 chr12 92967735 92967799 -51314690 + (TG)n Simple_repeat Simple_repeat 2 64 0 766 238 6 22 chr12 92968088 92968269 -51314220 - MER58A DNA MER1_type -1 223 46 483 293 79 49 chr12 92968298 92968753 -51313736 - MLT1H LTR MaLR -47 502 1 21 82 0 0 chr12 92969509 92969558 -51312931 + AT_rich Low_complexity Low_complexity 1 49 0 1912 158 3 0 chr12 92969784 92970082 -51312407 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr12 92970096 92970126 -51312363 + AT_rich Low_complexity Low_complexity 1 30 0 1668 133 0 0 chr12 92970322 92970603 -51311886 + AluSx SINE Alu 49 329 0 411 38 0 0 chr12 92970817 92970870 -51311619 + (CA)n Simple_repeat Simple_repeat 1 53 0 619 247 53 60 chr12 92973079 92973362 -51309127 + L1MA9 LINE L1 6002 6282 -30 200 217 0 0 chr12 92974213 92974259 -51308230 + (TA)n Simple_repeat Simple_repeat 2 47 0 26 0 0 0 chr12 92974395 92974421 -51308068 + AT_rich Low_complexity Low_complexity 1 26 0 1890 147 22 38 chr12 92974614 92974982 -51307507 + THE1C LTR MaLR 1 362 -13 292 407 47 0 chr12 92975840 92975990 -51306499 + L2 LINE L2 3116 3272 0 182 333 0 14 chr12 92976743 92976812 -51305677 + MIR SINE MIR 94 161 -101 2041 148 3 0 chr12 92977509 92977813 -51304676 - AluSx SINE Alu -7 305 1 577 344 39 59 chr12 92978339 92978729 -51303760 - MLT1I LTR MaLR -6 403 22 21 36 0 0 chr12 92978919 92978947 -51303542 + AT_rich Low_complexity Low_complexity 1 28 0 2205 106 3 10 chr12 92979214 92979525 -51302964 - AluSp SINE Alu -4 309 1 2777 244 63 28 chr12 92979716 92980832 -51301657 - L1MC2 LINE L1 -19 6325 5137 840 237 140 4 chr12 92980863 92981091 -51301398 - MLT1E1 LTR MaLR -395 259 1 285 307 21 64 chr12 92981091 92981231 -51301258 - MLT1E1-int LTR MaLR 0 1371 1238 246 266 86 102 chr12 92981242 92981370 -51301119 - MLT1E1-int LTR MaLR -103 1268 1143 282 64 106 0 chr12 92981463 92981510 -51300979 + L1PA13 LINE L1 6111 6162 -1 1537 166 168 53 chr12 92981563 92981937 -51300552 + MLT2B2 LTR ERVL 99 515 0 22 0 0 0 chr12 92981966 92981988 -51300501 + AT_rich Low_complexity Low_complexity 1 22 0 266 309 64 44 chr12 92982037 92982286 -51300203 + L1ME LINE L1 5526 5779 -342 21 0 0 0 chr12 92982797 92982818 -51299671 + AT_rich Low_complexity Low_complexity 1 21 0 30 45 0 0 chr12 92982856 92982900 -51299589 + AT_rich Low_complexity Low_complexity 1 44 0 1630 223 17 14 chr12 92983574 92983929 -51298560 + MLT1A1 LTR MaLR 10 365 0 241 80 20 20 chr12 92984689 92984739 -51297750 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 41630 40 22 2 chr12 92984739 92990747 -51291742 - L1PA3 LINE L1 -24 6131 6 233 200 0 0 chr12 92991227 92991272 -51291217 + (CA)n Simple_repeat Simple_repeat 1 45 0 387 0 0 0 chr12 92993111 92993154 -51289335 + (TG)n Simple_repeat Simple_repeat 1 43 0 228 389 79 7 chr12 92995115 92995254 -51287235 - L2 LINE L2 -17 3255 3107 2020 192 124 12 chr12 92995328 92995813 -51286676 - MER67A LTR ERV1 -4 539 1 1435 236 75 16 chr12 92996033 92996474 -51286015 + MLT1C LTR MaLR 1 467 0 18694 175 33 19 chr12 92997474 92997615 -51284874 - L1MA3 LINE L1 -154 7570 7433 2781 3 0 0 chr12 92997615 92997919 -51284570 - AluYa5 SINE Alu -7 304 1 18694 175 33 19 chr12 92997919 93000229 -51282260 - L1MA3 LINE L1 -291 7433 5158 200 35 35 0 chr12 93000229 93000258 -51282231 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 18694 175 33 19 chr12 93000258 93005170 -51277319 - L1MA3 LINE L1 -2566 5158 104 454 284 41 0 chr12 93005272 93005441 -51277048 - L1MA3 LINE L1 -7378 187 12 181 241 19 19 chr12 93006445 93006499 -51275990 + MIR3 SINE MIR 121 174 -34 278 275 0 0 chr12 93006508 93006588 -51275901 + A-rich Low_complexity Low_complexity 1 80 0 24 32 0 0 chr12 93008232 93008263 -51274226 + AT_rich Low_complexity Low_complexity 1 31 0 185 32 0 65 chr12 93008359 93008390 -51274099 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 2308 94 0 3 chr12 93009436 93009744 -51272745 + AluY SINE Alu 1 307 -4 261 228 35 0 chr12 93010461 93010518 -51271971 + L2 LINE L2 3255 3313 0 225 215 56 19 chr12 93012099 93012206 -51270283 + (TA)n Simple_repeat Simple_repeat 1 111 0 312 244 84 25 chr12 93012219 93012338 -51270151 + L1MC4 LINE L1 6615 6740 -1302 22 35 0 0 chr12 93012567 93012596 -51269893 + AT_rich Low_complexity Low_complexity 1 29 0 1573 191 64 6 chr12 93012621 93012966 -51269523 + MLT1A1 LTR MaLR 1 365 0 261 119 0 0 chr12 93013061 93013103 -51269386 + (TG)n Simple_repeat Simple_repeat 2 43 0 200 215 54 15 chr12 93013103 93013233 -51269256 + (TA)n Simple_repeat Simple_repeat 2 136 0 221 335 154 0 chr12 93014820 93015002 -51267487 + MIR SINE MIR 52 261 -1 652 215 0 57 chr12 93015519 93015677 -51266812 + FRAM SINE Alu 2 150 -16 782 230 29 0 chr12 93016685 93016859 -51265630 - MER58A DNA MER1_type -1 223 45 2107 115 49 55 chr12 93017935 93018301 -51264188 - THE1B LTR MaLR 0 364 1 2457 99 39 8 chr12 93018301 93018656 -51263833 - THE1B-int LTR MaLR 0 1580 1215 240 330 47 9 chr12 93019227 93019333 -51263156 + MIR SINE MIR 2 111 -151 235 268 18 0 chr12 93020566 93020622 -51261867 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 431 213 0 12 chr12 93020622 93020702 -51261787 + Tigger5 DNA MER2_type 1 79 -2244 401 164 0 15 chr12 93020750 93020817 -51261672 + Tigger5 DNA MER2_type 2258 2323 0 512 299 126 14 chr12 93020850 93021064 -51261425 + MLT1H1 LTR MaLR 31 268 -287 231 129 194 16 chr12 93021225 93021287 -51261202 + MLT1G1 LTR MaLR 518 590 -5 201 74 0 0 chr12 93022596 93022623 -51259866 + (TATG)n Simple_repeat Simple_repeat 2 28 0 571 288 56 65 chr12 93022935 93023490 -51258999 + L1ME LINE L1 5257 5806 -356 212 75 0 25 chr12 93023570 93023610 -51258879 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7349 36 0 0 chr12 93023610 93025139 -51257350 - L1PA3 LINE L1 -5 6150 4624 7348 30 2 0 chr12 93025139 93026017 -51256472 + L1PA3 LINE L1 3764 4643 -1503 633 160 0 9 chr12 93026245 93026351 -51256138 + LTR3b LTR ERVK 1 105 -395 277 191 0 29 chr12 93026356 93026424 -51256065 - HERVK3 LTR ERVK -7110 133 68 340 73 0 0 chr12 93026825 93026866 -51255623 - LTR3b LTR ERVK 0 500 460 3279 121 16 14 chr12 93026867 93027362 -51255127 - LTR3b LTR ERVK -4 496 1 30 27 0 0 chr12 93027569 93027606 -51254883 + AT_rich Low_complexity Low_complexity 1 37 0 322 237 52 10 chr12 93027744 93027841 -51254648 + L1M4 LINE L1 3867 3967 -2179 258 253 112 76 chr12 93027846 93028150 -51254339 + L1M4 LINE L1 3978 4292 -1854 22 0 0 0 chr12 93028195 93028217 -51254272 + AT_rich Low_complexity Low_complexity 1 22 0 571 263 13 0 chr12 93028217 93028373 -51254116 + L1M4 LINE L1 4450 4607 -1539 382 307 22 40 chr12 93028384 93028609 -51253880 + L1ME2 LINE L1 44 264 -6132 1244 254 110 34 chr12 93028715 93029152 -51253337 + MLT1E LTR MaLR 124 593 0 921 231 69 3 chr12 93029156 93029446 -51253043 + L1ME2 LINE L1 2761 3069 -3146 225 257 15 103 chr12 93029475 93029611 -51252878 + L1ME2 LINE L1 3727 3850 -2365 240 289 84 76 chr12 93029658 93030028 -51252461 + L1ME2 LINE L1 4524 4896 -1319 806 223 0 30 chr12 93030061 93030258 -51252231 - MER3 DNA MER1_type -17 192 2 531 212 54 43 chr12 93030275 93030484 -51252005 + L1ME2 LINE L1 4909 5119 -1096 204 111 0 0 chr12 93030576 93030612 -51251877 + (TA)n Simple_repeat Simple_repeat 2 37 0 * 261 0 0 0 chr12 93030611 93030640 -51251849 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 175 0 18 chr12 93030660 93030717 -51251772 + LTR66 LTR ERVL 383 438 -172 275 155 35 0 chr12 93030737 93030795 -51251694 - L1MCa LINE L1 -4358 2068 2009 234 103 0 52 chr12 93030845 93030903 -51251586 - LTR66 LTR ERVL -160 450 396 428 220 0 33 chr12 93030962 93031239 -51251250 + (TA)n Simple_repeat Simple_repeat 1 267 0 349 331 16 8 chr12 93031334 93031461 -51251028 - L2 LINE L2 -273 3040 2913 1439 275 105 32 chr12 93031547 93031833 -51250656 + L1ME2 LINE L1 5327 5591 -642 2410 67 0 0 chr12 93031833 93032133 -51250356 + AluY SINE Alu 1 300 -11 1439 275 105 32 chr12 93032133 93032672 -51249817 + L1ME2 LINE L1 5591 6223 -10 280 321 176 3 chr12 93032727 93032933 -51249556 + L1MC4 LINE L1 6402 6597 -1211 234 85 51 51 chr12 93033233 93033292 -51249197 + CT-rich Low_complexity Low_complexity 2 60 0 185 342 51 25 chr12 93033979 93034058 -51248431 - L2 LINE L2 -55 3217 3137 390 196 20 34 chr12 93034075 93034223 -51248266 + (TA)n Simple_repeat Simple_repeat 2 147 0 1507 341 86 34 chr12 93034316 93035341 -51247148 - L2 LINE L2 -273 3040 1968 2281 182 14 14 chr12 93036774 93037219 -51245270 - L1P LINE L1 -2058 4088 3644 * 3469 171 12 11 chr12 93037216 93038793 -51243696 + L1PA15 LINE L1 4504 6161 -4 1405 210 25 59 chr12 93040074 93040478 -51242011 - MLT1B LTR MaLR 0 390 1 997 189 90 37 chr12 93040598 93040926 -51241563 + MSTD LTR MaLR 1 385 -11 424 62 108 0 chr12 93040983 93041048 -51241441 - L1PA13 LINE L1 0 6163 6092 27 29 0 0 chr12 93041093 93041127 -51241362 + AT_rich Low_complexity Low_complexity 1 34 0 28 29 0 0 chr12 93041974 93042009 -51240480 + AT_rich Low_complexity Low_complexity 1 35 0 284 167 14 0 chr12 93042192 93042264 -51240225 + (TA)n Simple_repeat Simple_repeat 2 74 0 210 45 68 0 chr12 93042327 93042371 -51240118 + (TA)n Simple_repeat Simple_repeat 1 47 0 220 197 33 33 chr12 93043022 93043083 -51239406 - MIR SINE MIR -30 232 172 21 0 0 0 chr12 93043083 93043104 -51239385 + AT_rich Low_complexity Low_complexity 1 21 0 1835 155 41 32 chr12 93043233 93043575 -51238914 - MER7A DNA MER2_type -1 345 3 1479 268 77 26 chr12 93043733 93044315 -51238174 - L1ME3A LINE L1 -107 6063 5452 22 0 0 0 chr12 93044475 93044497 -51237992 + AT_rich Low_complexity Low_complexity 1 22 0 1229 291 100 34 chr12 93044499 93044773 -51237716 - L1ME3A LINE L1 -2373 3773 3518 2120 95 3 0 chr12 93044773 93045086 -51237403 - AluSp SINE Alu 0 314 1 1229 291 100 34 chr12 93045086 93046075 -51236414 - L1ME3A LINE L1 -2628 3518 2426 1584 296 54 25 chr12 93046809 93047364 -51235125 + MLT1E LTR MaLR 23 593 0 434 286 76 6 chr12 93047754 93047943 -51234546 - L1ME LINE L1 -557 5605 5402 362 307 157 17 chr12 93047980 93048273 -51234216 - L1ME LINE L1 -807 5339 5006 264 260 96 51 chr12 93048518 93048810 -51233679 - L1ME LINE L1 -2006 4140 3836 1892 182 35 26 chr12 93048890 93049314 -51233175 - L1MC1 LINE L1 0 6333 5906 21 0 0 0 chr12 93049471 93049492 -51232997 + AT_rich Low_complexity Low_complexity 1 21 0 344 307 52 47 chr12 93049623 93049993 -51232496 - L1MC1 LINE L1 -398 5764 5401 21 0 0 0 chr12 93050611 93050632 -51231857 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr12 93050749 93050774 -51231715 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr12 93051853 93051879 -51230610 + (TA)n Simple_repeat Simple_repeat 2 27 0 504 143 0 0 chr12 93051879 93051963 -51230526 + (CA)n Simple_repeat Simple_repeat 2 85 0 239 259 47 0 chr12 93051974 93052059 -51230430 + L1MC4 LINE L1 6615 6703 -1339 242 220 0 0 chr12 93052063 93052109 -51230380 - L1MC4 LINE L1 -1343 6699 6651 180 0 0 0 chr12 93052109 93052129 -51230360 + (GA)n Simple_repeat Simple_repeat 2 21 0 242 220 0 0 chr12 93052129 93052141 -51230348 - L1MC4 LINE L1 -1390 6652 6641 9420 192 104 14 chr12 93052333 93054648 -51227841 - L1MC3 LINE L1 -1 8178 5656 1162 144 16 5 chr12 93054679 93054873 -51227616 - L1PA16 LINE L1 -22 6144 5949 * 3466 257 83 17 chr12 93054866 93056252 -51226237 - L1MC3 LINE L1 -887 5653 4176 465 209 0 0 chr12 93056252 93056338 -51226151 - FRAM/FAM SINE Alu -91 85 1 250 189 14 54 chr12 93056338 93056412 -51226077 - L1MC3 LINE L1 -3818 2722 2652 216 134 82 21 chr12 93056416 93056513 -51225976 + (TA)n Simple_repeat Simple_repeat 2 104 0 236 152 69 0 chr12 93056516 93056584 -51225905 - L1MC3 LINE L1 -3892 2648 2608 248 296 0 34 chr12 93057009 93057097 -51225392 - MLT2E LTR ERVL -508 120 36 238 349 47 39 chr12 93057296 93057425 -51225064 + L2 LINE L2 3143 3272 0 1009 255 56 38 chr12 93059164 93059544 -51222945 + MLT1H1 LTR MaLR 173 538 -4 1036 289 49 59 chr12 93059600 93060196 -51222293 - MLT1E LTR MaLR -3 590 1 200 277 53 21 chr12 93060663 93060757 -51221732 + MIR SINE MIR 37 133 -129 * 626 347 86 38 chr12 93060741 93061216 -51221273 + L2 LINE L2 2470 2967 -347 226 340 76 7 chr12 93061290 93061434 -51221055 + L2 LINE L2 3082 3235 -78 21 0 0 0 chr12 93063290 93063311 -51219178 + AT_rich Low_complexity Low_complexity 1 21 0 264 326 60 25 chr12 93064303 93064622 -51217867 - L1MEc LINE L1 -4656 1740 1411 1254 338 38 21 chr12 93064623 93065279 -51217210 - ERVL LTR ERVL -3417 2347 1681 23 54 0 0 chr12 93065507 93065544 -51216945 + AT_rich Low_complexity Low_complexity 1 37 0 1255 339 67 28 chr12 93067185 93068071 -51214418 + HERV16 LTR ERVL 2443 3131 -1865 2257 159 57 18 chr12 93068071 93068511 -51213978 - MSTB2 LTR MaLR 0 457 1 1255 339 67 28 chr12 93068511 93068968 -51213521 + HERV16 LTR ERVL 3131 3569 -1427 858 301 45 73 chr12 93069144 93069849 -51212640 + HERV16 LTR ERVL 3868 4377 -619 324 259 143 70 chr12 93069926 93070227 -51212262 + HERV16 LTR ERVL 4501 4823 -173 346 352 44 55 chr12 93070487 93070922 -51211567 + LTR16B LTR ERVL 28 457 -7 2278 140 5 24 chr12 93071098 93071469 -51211020 + THE1B LTR MaLR 1 364 0 10648 113 21 1 chr12 93071469 93073018 -51209471 + THE1B-int LTR MaLR 1 1580 0 1701 161 62 31 chr12 93073018 93073371 -51209118 + THE1B LTR MaLR 1 364 0 1897 153 77 3 chr12 93074050 93074389 -51208100 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr12 93074863 93074884 -51207605 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr12 93075105 93075148 -51207341 + (CA)n Simple_repeat Simple_repeat 2 44 0 220 229 0 0 chr12 93075162 93075210 -51207279 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 412 339 0 8 chr12 93075323 93075444 -51207045 - MER5A DNA MER1_type -9 180 61 1855 177 14 0 chr12 93075477 93075822 -51206667 - L1PA16 LINE L1 -9 6860 6511 16170 195 27 25 chr12 93075825 93082209 -51200280 - L1PA16 LINE L1 -440 6429 25 2475 193 33 0 chr12 93082295 93082782 -51199707 - L1MA9 LINE L1 -30 6282 5780 1020 186 21 80 chr12 93082791 93083221 -51199268 - L1MA9 LINE L1 -751 5395 4911 * 1666 278 73 16 chr12 93083191 93084273 -51198216 - L1MA9 LINE L1 -2736 3410 2258 1889 22 0 0 chr12 93084362 93084586 -51197903 + L1PA4 LINE L1 5930 6153 -2 4258 262 40 11 chr12 93084658 93085993 -51196496 - L1M4c LINE L1 -4516 2137 1104 239 127 0 127 chr12 93086003 93086023 -51196466 + MLT2B1 LTR ERVL 464 485 -35 279 0 0 0 chr12 93086023 93086054 -51196435 + (TG)n Simple_repeat Simple_repeat 2 32 0 239 127 0 127 chr12 93086054 93086096 -51196393 + MLT2B1 LTR ERVL 485 518 -2 21 57 0 0 chr12 93086240 93086275 -51196214 + AT_rich Low_complexity Low_complexity 1 35 0 2332 209 44 47 chr12 93086630 93087332 -51195157 + L1MC3 LINE L1 7085 7784 -1 22 0 0 0 chr12 93087427 93087449 -51195040 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr12 93087615 93087664 -51194825 + AT_rich Low_complexity Low_complexity 1 49 0 28 61 0 0 chr12 93087881 93087930 -51194559 + AT_rich Low_complexity Low_complexity 1 49 0 362 334 30 57 chr12 93088658 93088990 -51193499 - MLT1I LTR MaLR -7 402 80 2005 230 37 73 chr12 93089001 93089562 -51192927 - MER68 LTR ERV1 -10 552 12 2408 70 0 0 chr12 93089562 93089863 -51192626 - AluY SINE Alu -10 301 1 249 280 0 0 chr12 93090211 93090286 -51192203 + (TA)n Simple_repeat Simple_repeat 2 76 0 27 103 0 0 chr12 93090381 93090478 -51192011 + AT_rich Low_complexity Low_complexity 1 97 0 237 310 97 28 chr12 93091420 93091636 -51190853 + L1ME4a LINE L1 5891 6121 0 1269 192 15 23 chr12 93091743 93092003 -51190486 - Tigger3(Golem) DNA MER2_type -1 3028 2771 629 207 7 55 chr12 93092009 93092154 -51190335 - Tigger3(Golem) DNA MER2_type -2891 138 1 25 31 0 0 chr12 93092848 93092880 -51189609 + AT_rich Low_complexity Low_complexity 1 32 0 240 86 0 0 chr12 93093669 93093704 -51188785 + (CA)n Simple_repeat Simple_repeat 2 36 0 344 340 42 0 chr12 93094103 93094247 -51188242 - L1MC/D LINE L1 -2127 5681 5532 9826 235 28 76 chr12 93094680 93095195 -51187294 + L1PA16 LINE L1 1996 2534 -4348 2328 112 29 32 chr12 93095195 93095571 -51186918 - THE1C LTR MaLR 0 375 1 9826 235 28 76 chr12 93095571 93096219 -51186270 + L1PA16 LINE L1 2534 3211 -3671 988 143 6 0 chr12 93096219 93096380 -51186109 - AluSq SINE Alu 0 313 152 9826 235 28 76 chr12 93096380 93096786 -51185703 + L1PA16 LINE L1 3211 3635 -3247 1621 205 10 0 chr12 93096786 93097084 -51185405 + AluSx SINE Alu 1 301 -11 9826 235 28 76 chr12 93097084 93100250 -51182239 + L1PA16 LINE L1 3635 6731 -151 229 180 0 0 chr12 93100263 93100313 -51182176 + L1MC4 LINE L1 6640 6689 -1353 258 276 23 0 chr12 93100421 93100508 -51181981 - L1MC4 LINE L1 -1339 6703 6615 234 236 18 0 chr12 93100509 93100564 -51181925 + (TA)n Simple_repeat Simple_repeat 2 57 0 2655 115 83 42 chr12 93101001 93101496 -51180993 - MER4-int LTR ERV1 -2247 4351 3837 * 3391 154 86 34 chr12 93101495 93102382 -51180107 - MER4-int LTR ERV1 -2917 3681 2749 1991 140 48 25 chr12 93102382 93102738 -51179751 + THE1B LTR MaLR 1 364 0 10842 120 6 2 chr12 93102743 93104311 -51178178 + THE1B-int LTR MaLR 6 1580 0 2072 114 63 26 chr12 93104311 93104662 -51177827 + THE1B LTR MaLR 1 364 0 1135 176 94 4 chr12 93104682 93104915 -51177574 + LTR8 LTR ERV1 4 257 -434 4343 87 54 7 chr12 93104915 93105614 -51176875 - LTR49-int LTR ERV1 -4103 2495 1764 342 0 0 0 chr12 93105639 93105677 -51176812 + (CA)n Simple_repeat Simple_repeat 1 38 0 5002 122 120 16 chr12 93105677 93106534 -51175955 - LTR49-int LTR ERV1 -5616 1142 203 969 236 53 35 chr12 93106551 93106845 -51175644 - LTR49-int LTR ERV1 -4163 2168 1925 841 161 15 0 chr12 93106850 93106987 -51175502 + THE1B LTR MaLR 226 364 0 536 240 7 55 chr12 93106987 93107146 -51175343 + MLT1A1 LTR MaLR 205 393 -3 432 97 0 0 chr12 93107160 93107222 -51175267 + (TA)n Simple_repeat Simple_repeat 1 62 0 363 286 13 19 chr12 93108479 93108633 -51173856 + (TA)n Simple_repeat Simple_repeat 2 154 0 198 103 0 0 chr12 93109688 93109717 -51172772 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 449 319 7 0 chr12 93109746 93109881 -51172608 - MIR SINE MIR -60 202 67 213 368 13 0 chr12 93109960 93110036 -51172453 + MIR SINE MIR 64 140 -68 823 326 37 20 chr12 93110679 93111032 -51171457 - MLT1I LTR MaLR -5 404 46 360 389 56 60 chr12 93111200 93111519 -51170970 + L2 LINE L2 2919 3236 -36 1749 283 89 17 chr12 93114233 93115017 -51167472 - L1ME1 LINE L1 -6 6160 5320 2236 280 58 53 chr12 93115018 93116473 -51166016 - L1ME1 LINE L1 -1831 4315 2853 452 214 0 0 chr12 93116483 93116567 -51165922 + MER82 DNA MER2_type 11 94 -559 742 265 29 29 chr12 93116752 93116956 -51165533 + MER82 DNA MER2_type 449 652 -1 2566 106 70 8 chr12 93117051 93117136 -51165353 - L1PB1 LINE L1 -44 6107 6023 1033 242 107 37 chr12 93117136 93117356 -51165133 - L1MA4A LINE L1 -289 6014 5811 342 0 0 0 chr12 93117356 93117394 -51165095 + (TG)n Simple_repeat Simple_repeat 2 39 0 180 111 0 0 chr12 93117393 93117420 -51165069 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 1033 242 107 37 chr12 93117394 93117949 -51164540 - L1MA4A LINE L1 -492 5811 2319 246 222 30 30 chr12 93118051 93118067 -51164422 - L1MA9 LINE L1 -33 6279 6264 1228 249 59 65 chr12 93118067 93118573 -51163916 - L1ME1 LINE L1 -44 6122 5620 207 130 56 19 chr12 93118820 93118874 -51163615 + (TATAA)n Simple_repeat Simple_repeat 3 58 0 259 207 17 17 chr12 93119446 93119504 -51162985 + L1MCc LINE L1 109 166 -6257 1424 253 105 27 chr12 93119917 93120309 -51162180 + L1M4 LINE L1 3600 3960 -2186 1298 199 55 71 chr12 93120309 93120690 -51161799 - THE1C LTR MaLR 0 375 1 1424 253 105 27 chr12 93120690 93120974 -51161515 + L1M4 LINE L1 3960 4329 -1817 209 194 0 0 chr12 93121281 93121317 -51161172 + (CATA)n Simple_repeat Simple_repeat 4 39 0 492 115 13 0 chr12 93121556 93121634 -51160855 - MADE1 DNA Mariner 0 80 2 1952 124 3 3 chr12 93122341 93122643 -51159846 - AluSg SINE Alu 0 302 1 357 327 75 41 chr12 93123640 93123906 -51158583 + L2 LINE L2 1732 2006 -1308 247 224 89 13 chr12 93124062 93124166 -51158323 + MLT1J2 LTR MaLR 64 159 -287 230 339 0 0 chr12 93124226 93124288 -51158201 + MLT1J2 LTR MaLR 265 326 -124 284 336 162 65 chr12 93124461 93125109 -51157380 - L2 LINE L2 -1745 1569 859 184 333 141 32 chr12 93125360 93125516 -51156973 + MIR SINE MIR 60 232 -30 29 28 0 0 chr12 93125549 93125585 -51156904 + AT_rich Low_complexity Low_complexity 1 36 0 300 370 0 10 chr12 93125588 93125688 -51156801 + L3 LINE CR1 1303 1401 -176 223 368 0 0 chr12 93126994 93127051 -51155438 - L2 LINE L2 -17 3255 3199 279 273 93 68 chr12 93128729 93128890 -51153599 + L2 LINE L2 3149 3313 0 24 32 0 0 chr12 93129635 93129666 -51152823 + AT_rich Low_complexity Low_complexity 1 31 0 6002 118 10 10 chr12 93129736 93130629 -51151860 + L1M4c LINE L1 4 873 -5588 257 250 0 0 chr12 93130629 93130681 -51151808 + LTR30 LTR ERV1 1 52 -670 314 129 0 32 chr12 93130699 93130761 -51151728 + pTR5 LTR ERV1 1573 1632 -806 3910 122 2 0 chr12 93130765 93131329 -51151160 + HERV9 LTR ERV1 7835 8399 0 240 250 0 0 chr12 93131329 93131381 -51151108 + LTR30 LTR ERV1 1 52 -670 933 108 156 244 chr12 93131385 93131822 -51150667 + LTR12 LTR ERV1 100 480 -234 4287 100 8 16 chr12 93131823 93131925 -51150564 + L1P3 LINE L1 870 971 -5490 2201 119 7 0 chr12 93131925 93132227 -51150262 + AluSg SINE Alu 1 304 -6 4287 100 8 16 chr12 93132227 93132744 -51149745 + L1P3 LINE L1 971 1484 -4977 303 319 76 66 chr12 93133011 93133315 -51149174 - LTR67 LTR ERVL -142 415 109 15202 137 15 15 chr12 93133407 93138260 -51144229 - L1PA7 LINE L1 -5 6149 1219 426 257 0 18 chr12 93138745 93138858 -51143631 - MER94 DNA DNA 0 134 24 1195 67 0 7 chr12 93138885 93139034 -51143455 + AluY SINE Alu 1 148 -163 2188 170 18 29 chr12 93139034 93139545 -51142944 + pTR5 LTR ERV1 742 1246 -1192 1670 101 8 0 chr12 93139539 93139786 -51142703 + pTR5 LTR ERV1 135 383 -2055 * 1159 81 0 0 chr12 93139786 93139962 -51142527 + AluY SINE Alu 137 312 0 635 82 0 0 chr12 93140115 93140230 -51142259 + AluSc SINE Alu 194 308 0 1101 233 109 27 chr12 93140744 93141241 -51141248 + MLT1E LTR MaLR 15 593 0 212 294 65 85 chr12 93141462 93141483 -51141006 - L2 LINE L2 -1607 1707 1687 1516 226 52 6 chr12 93141483 93141832 -51140657 + MLT1A1 LTR MaLR 1 365 0 212 294 65 85 chr12 93141832 93142011 -51140478 - L2 LINE L2 -1627 1687 1511 321 336 59 0 chr12 93142432 93142551 -51139938 - MIR SINE MIR -132 130 5 632 336 69 26 chr12 93142909 93143400 -51139089 + L1MEc LINE L1 1229 1740 -4656 1915 72 0 0 chr12 93143581 93143817 -51138672 + AluY SINE Alu 1 236 -75 503 290 133 63 chr12 93143912 93144514 -51137975 + L1MEc LINE L1 2094 2687 -3528 462 258 25 58 chr12 93144576 93144640 -51137849 - MLT1J2 LTR MaLR -126 324 264 603 213 72 81 chr12 93144640 93144861 -51137628 + MER20 DNA MER1_type 1 219 0 462 258 25 58 chr12 93144861 93144916 -51137573 - MLT1J2 LTR MaLR -186 264 209 838 299 28 37 chr12 93145101 93145560 -51136929 - L1M4 LINE L1 -3326 2820 2366 305 328 57 8 chr12 93145595 93145717 -51136772 + L1MEd LINE L1 978 1105 -5014 2515 194 57 14 chr12 93146436 93146942 -51135547 + MER44D DNA MER2_type 23 605 0 22 0 0 0 chr12 93147566 93147588 -51134901 + AT_rich Low_complexity Low_complexity 1 22 0 5045 26 1 1 chr12 93147963 93148690 -51133799 - L1PA3 LINE L1 -296 5859 5133 * 9609 42 4 0 chr12 93148685 93150395 -51132094 + L1PA4 LINE L1 4215 5932 -223 813 270 61 65 chr12 93150514 93150650 -51131839 - L1MC4a LINE L1 -1745 6063 5928 2134 121 0 0 chr12 93150650 93150961 -51131528 - AluSq SINE Alu 0 311 1 813 270 61 65 chr12 93150961 93151411 -51131078 - L1MC4a LINE L1 -1880 5928 5477 298 244 30 38 chr12 93151406 93151537 -51130952 + L1 LINE L1 4923 5052 -1094 * 33 0 0 0 chr12 93151624 93151657 -51130832 + AT_rich Low_complexity Low_complexity 1 33 0 13266 46 0 1 chr12 93152796 93154433 -51128056 + L1P LINE L1 3526 5161 -985 308 239 86 77 chr12 93154562 93154679 -51127810 + L1MA10 LINE L1 6178 6295 -17 9446 130 14 0 chr12 93154802 93156291 -51126198 - L1P LINE L1 -1500 4646 3137 1085 124 72 9 chr12 93156548 93156778 -51125711 + LTR17 LTR ERV1 79 708 -72 458 81 0 0 chr12 93156786 93156848 -51125641 - MER57A LTR ERV1 -341 62 1 511 330 175 22 chr12 93156958 93157273 -51125216 + LTR16B LTR ERVL 102 464 0 573 255 43 0 chr12 93157495 93157636 -51124853 - MER45A DNA AcHobo -1 177 31 2005 115 0 0 chr12 93158254 93158515 -51123974 + AluSx SINE Alu 26 286 -26 2479 123 143 8 chr12 93160052 93160522 -51121967 - LTR10A LTR ERV1 -64 545 13 32 43 0 0 chr12 93160576 93160622 -51121867 + AT_rich Low_complexity Low_complexity 1 46 0 332 67 0 0 chr12 93160661 93160706 -51121783 - LTR10A-int LTR ERV1 -86 6563 6519 227 349 0 0 chr12 93160706 93160772 -51121717 - L1MEc LINE L1 -6299 97 32 2012 98 15 0 chr12 93161105 93161371 -51121118 - AluSc SINE Alu -8 301 32 409 289 44 19 chr12 93162476 93162635 -51119854 + LTR50 LTR ERVL 3 165 -630 266 261 225 14 chr12 93162659 93162801 -51119688 + LTR50 LTR ERVL 298 469 -326 22 0 0 0 chr12 93162931 93162953 -51119536 + AT_rich Low_complexity Low_complexity 1 22 0 282 313 85 54 chr12 93163815 93164039 -51118450 + MIR SINE MIR 32 262 0 209 363 48 8 chr12 93164059 93164183 -51118306 + MIR SINE MIR 19 147 -61 342 0 0 0 chr12 93164985 93165023 -51117466 + (TG)n Simple_repeat Simple_repeat 1 38 0 1020 215 18 94 chr12 93165207 93165589 -51116900 + MLT1A1 LTR MaLR 1 353 -12 1448 273 38 17 chr12 93165713 93166135 -51116354 + LTR40a LTR ERVL 70 500 -19 675 188 67 131 chr12 93166296 93166625 -51115864 + MLT2C1 LTR ERVL 90 397 0 308 311 33 22 chr12 93167228 93167411 -51115078 - MIR SINE MIR 0 262 78 1532 158 9 70 chr12 93167412 93167753 -51114736 + MER65A LTR ERV1 1 320 -125 1805 207 34 36 chr12 93167763 93168237 -51114252 - MER65-int LTR ERV1 -2782 2089 1617 392 198 99 59 chr12 93168341 93168543 -51113946 - MER65-int LTR ERV1 -3264 1607 1398 1881 137 0 42 chr12 93168855 93169161 -51113328 - AluSg SINE Alu -17 293 1 7536 119 24 4 chr12 93169190 93170336 -51112153 + L1P LINE L1 2 1170 -4976 7847 194 49 15 chr12 93170446 93171836 -51110653 + MLT1A1-int LTR MaLR 49 1499 -152 197 81 0 27 chr12 93171836 93171873 -51110616 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 7847 194 49 15 chr12 93171873 93172032 -51110457 + MLT1A1-int LTR MaLR 1499 1651 0 1148 197 98 22 chr12 93172032 93172306 -51110183 + MSTA LTR MaLR 1 295 -133 1331 198 7 11 chr12 93172880 93173153 -51109336 + L1PB4 LINE L1 5882 6153 -3 294 50 0 0 chr12 93173174 93173214 -51109275 + (CA)n Simple_repeat Simple_repeat 1 40 0 287 299 175 38 chr12 93173246 93173457 -51109032 + MIR SINE MIR 23 262 0 305 234 39 0 chr12 93173564 93173641 -51108848 + MLT2E LTR ERVL 34 113 -515 1563 187 8 0 chr12 93173982 93174249 -51108240 + AluSq SINE Alu 6 274 -39 227 253 69 35 chr12 93175600 93175687 -51106802 - L2 LINE L2 -5 3267 3178 475 17 0 0 chr12 93176131 93176190 -51106299 + L1PA3 LINE L1 6094 6152 -3 25 83 0 0 chr12 93176190 93176250 -51106239 + AT_rich Low_complexity Low_complexity 1 60 0 342 342 0 18 chr12 93176859 93176973 -51105516 - MER5B DNA MER1_type -1 177 66 213 309 0 0 chr12 93177306 93177374 -51105115 + (TA)n Simple_repeat Simple_repeat 1 68 0 28 29 0 0 chr12 93177600 93177635 -51104854 + AT_rich Low_complexity Low_complexity 1 35 0 781 338 57 44 chr12 93178851 93179304 -51103185 - L2 LINE L2 -40 3273 2815 359 292 26 9 chr12 93180810 93180923 -51101566 - MLT1I LTR MaLR -246 163 49 22 0 0 0 chr12 93180980 93181002 -51101487 + AT_rich Low_complexity Low_complexity 1 22 0 193 379 19 39 chr12 93181503 93181606 -51100883 + MIR SINE MIR 16 116 -92 280 232 36 9 chr12 93181794 93181906 -51100583 + L1MC3 LINE L1 6958 7072 -713 279 296 37 0 chr12 93181940 93182021 -51100468 + MLT1A1 LTR MaLR 39 122 -445 1993 234 101 4 chr12 93182026 93182570 -51099919 + L1MD3 LINE L1 7399 7995 0 289 264 162 14 chr12 93182584 93182732 -51099757 + MLT1J LTR MaLR 324 493 -18 1349 240 39 33 chr12 93182852 93183311 -51099178 - L1MA9 LINE L1 -38 6274 5818 1748 191 8 27 chr12 93183556 93183923 -51098566 - MLT1A1 LTR MaLR -1 364 5 2059 126 0 0 chr12 93183936 93184214 -51098275 - AluSx SINE Alu -14 298 21 849 267 82 44 chr12 93184541 93184856 -51097633 + MLT1H LTR MaLR 41 367 -182 612 242 8 0 chr12 93185368 93185496 -51096993 + MLT1A1 LTR MaLR 235 363 -2 778 257 82 16 chr12 93185504 93185761 -51096728 + L1MB8 LINE L1 5905 6178 0 809 278 68 21 chr12 93185823 93186464 -51096025 - L1ME LINE L1 -616 5548 4874 335 378 166 25 chr12 93186977 93187506 -51094983 - L2 LINE L2 -340 2974 2371 1138 198 41 72 chr12 93188330 93188789 -51093700 + MER4B-int LTR ERV1 1720 2334 -4424 653 118 49 0 chr12 93188789 93188891 -51093598 - L1PA12 LINE L1 -4 6164 6058 1138 198 41 72 chr12 93188891 93188992 -51093497 + MER4B-int LTR ERV1 2334 2437 -4321 757 204 32 41 chr12 93189159 93189380 -51093109 + MER4B-int LTR ERV1 3514 3732 -2866 2499 61 0 0 chr12 93190218 93190529 -51091960 + AluY SINE Alu 1 311 0 1279 137 97 20 chr12 93190530 93190778 -51091711 + MER65A LTR ERV1 179 445 0 423 267 42 42 chr12 93190862 93191098 -51091391 + MER65A-int LTR ERV1 83 318 -4553 214 191 0 0 chr12 93191443 93191485 -51091004 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1775 128 24 0 chr12 93191627 93191878 -51090611 + AluSc SINE Alu 1 257 -52 1248 227 66 13 chr12 93192576 93192893 -51089596 - MER58B DNA MER1_type -7 334 1 1570 295 88 26 chr12 93193701 93194311 -51088178 + L1MEc LINE L1 83 730 -5666 1580 180 48 40 chr12 93194315 93194687 -51087802 - THE1C LTR MaLR 0 375 1 1242 203 40 24 chr12 93194868 93195249 -51087240 - L1M LINE L1 -743 5403 5039 766 181 0 14 chr12 93195319 93195457 -51087032 - FLAM_C SINE Alu -5 138 3 2032 249 13 15 chr12 93195457 93196063 -51086426 - L1 LINE L1 -1188 4958 4354 10196 97 4 8 chr12 93196167 93197681 -51084808 + L1P LINE L1 1092 2599 -3547 215 342 13 13 chr12 93198177 93198256 -51084233 + MIR SINE MIR 2 80 -182 2289 157 15 46 chr12 93198257 93198715 -51083774 - MER65A LTR ERV1 -1 444 1 1834 246 55 2 chr12 93198715 93199166 -51083323 - MER65A-int LTR ERV1 0 4871 4397 277 344 62 19 chr12 93199326 93199486 -51083003 + MIR SINE MIR 94 260 -2 522 348 24 12 chr12 93199655 93199819 -51082670 - MER91A DNA MER1_type -30 166 1 872 114 10 140 chr12 93200826 93201019 -51081470 + MER57A-int LTR ERV1 7369 7536 -1 1943 179 59 0 chr12 93201022 93201396 -51081093 + MER57A LTR ERV1 8 403 0 1363 347 17 6 chr12 93201397 93201933 -51080556 - HERV16 LTR ERVL -2788 2208 1667 3514 163 21 6 chr12 93202055 93202676 -51079813 + LTR34 LTR ERV1 70 699 0 1391 200 148 0 chr12 93202676 93202985 -51079504 - MER39B LTR ERV1 -311 342 1 3237 114 77 39 chr12 93203255 93203789 -51078700 - MER41C LTR ERV1 0 554 1 1763 172 3 44 chr12 93203900 93204220 -51078269 - AluJo SINE Alu -5 307 1 1947 167 0 0 chr12 93204262 93204567 -51077922 - AluJo SINE Alu -6 306 2 21 36 0 0 chr12 93204953 93204981 -51077508 + AT_rich Low_complexity Low_complexity 1 28 0 235 302 101 23 chr12 93205165 93205294 -51077195 - L3 LINE CR1 -92 1485 1347 2329 266 34 9 chr12 93205617 93206425 -51076064 - L1M1 LINE L1 -3314 4251 3425 447 215 40 81 chr12 93206735 93206884 -51075605 - LTR52 LTR ERVL -37 384 242 1657 220 46 17 chr12 93206897 93207255 -51075234 - MLT1A1 LTR MaLR 0 457 1 892 234 9 28 chr12 93207259 93207477 -51075012 - LTR52 LTR ERVL -204 217 4 823 158 17 206 chr12 93208533 93208559 -51073930 + LTR8A LTR ERV1 187 216 -511 3170 153 35 2 chr12 93208559 93209095 -51073394 - MER41C LTR ERV1 0 554 1 823 158 17 206 chr12 93209095 93209428 -51073061 + LTR8A LTR ERV1 216 478 -249 28 0 0 0 chr12 93210048 93210076 -51072413 + AT_rich Low_complexity Low_complexity 1 28 0 632 332 66 28 chr12 93210723 93211118 -51071371 - MLT1J2 LTR MaLR -4 446 37 1675 116 41 34 chr12 93211751 93212043 -51070446 + MER9 LTR ERVK 1 294 -217 25 31 0 0 chr12 93212068 93212100 -51070389 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr12 93212143 93212167 -51070322 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 93213210 93213232 -51069257 + AT_rich Low_complexity Low_complexity 1 22 0 2121 223 24 22 chr12 93214304 93214851 -51067638 - L1MC3 LINE L1 -9 7776 7229 25350 33 1 0 chr12 93314872 93318238 -50964251 + L1P LINE L1 1909 5280 -866 24 0 0 0 chr12 93318251 93318275 -50964214 + AT_rich Low_complexity Low_complexity 1 24 0 892 174 25 31 chr12 93318276 93318437 -50964052 + AluJb SINE Alu 132 291 -21 245 132 0 0 chr12 93318437 93318475 -50964014 - L1M1 LINE L1 -493 5810 5773 2143 104 3 7 chr12 93318491 93318780 -50963709 + AluSc SINE Alu 1 288 -21 537 129 43 0 chr12 93318782 93318921 -50963568 + (TA)n Simple_repeat Simple_repeat 1 145 0 1923 218 23 11 chr12 93318952 93319387 -50963102 + L1MD2 LINE L1 5789 6228 -131 376 61 20 0 chr12 93319499 93319548 -50962941 - THE1B LTR MaLR -314 50 1 612 277 124 9 chr12 93319649 93320049 -50962440 - MLT1L LTR MaLR -124 491 18 2664 238 62 63 chr12 93320670 93321631 -50960858 + L1MDb LINE L1 11 1102 -5304 1989 155 0 7 chr12 93321631 93321934 -50960555 + AluSx SINE Alu 1 301 -11 2664 238 62 63 chr12 93321934 93322404 -50960085 + L1MDb LINE L1 1102 1571 -4835 2226 112 0 0 chr12 93324107 93324402 -50958087 + AluY SINE Alu 1 295 -16 1391 214 103 32 chr12 93324489 93325036 -50957453 - MLT1E3 LTR MaLR 0 654 1 207 310 126 0 chr12 93325301 93325388 -50957101 - MIR SINE MIR -117 145 48 2048 255 25 14 chr12 93325692 93326257 -50956232 + L1ME1 LINE L1 5596 6166 0 265 200 108 17 chr12 93326257 93326377 -50956112 + L1ME4a LINE L1 5990 6120 -1 547 327 79 31 chr12 93326409 93326926 -50955563 + L1M4 LINE L1 4156 4697 -1449 375 287 96 24 chr12 93330536 93330745 -50951744 - L1ME3A LINE L1 -266 5904 5681 1074 275 65 40 chr12 93330938 93331508 -50950981 + HAL1b LINE L1 741 1324 -24 853 205 20 1 chr12 93331893 93332207 -50950282 - MER89 LTR ERV1 -28 531 180 537 283 161 50 chr12 93333757 93334174 -50948315 - MLT1K LTR MaLR -3 585 123 1113 238 70 68 chr12 93334689 93335092 -50947397 + L1M4 LINE L1 4321 4727 -1419 1941 128 7 11 chr12 93335092 93335374 -50947115 - AluSx SINE Alu -31 281 1 1113 238 70 68 chr12 93335374 93335500 -50946989 + L1M4 LINE L1 4727 4851 -1295 22 0 0 0 chr12 93335957 93335979 -50946510 + AT_rich Low_complexity Low_complexity 1 22 0 331 171 13 13 chr12 93336918 93336994 -50945495 + MER116 DNA Mariner 1 76 -4 293 350 0 0 chr12 93337037 93337137 -50945352 + MIR SINE MIR 20 119 -143 680 249 53 0 chr12 93337172 93337341 -50945148 + MER45A DNA AcHobo 1 178 0 2051 153 45 100 chr12 93337589 93338040 -50944449 + MLT2C2 LTR ERVL 1 424 -40 195 69 0 0 chr12 93338040 93338069 -50944420 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 2051 153 45 100 chr12 93338069 93338108 -50944381 + MLT2C2 LTR ERVL 424 464 0 359 309 37 12 chr12 93338232 93338394 -50944095 - MIR SINE MIR 0 262 97 1019 258 63 9 chr12 93338751 93339084 -50943405 - HsTC2 DNA Tc2 -1358 540 190 269 203 34 0 chr12 93339495 93339554 -50942935 + MLT1D LTR MaLR 439 499 -6 5578 133 34 17 chr12 93339721 93339935 -50942554 - L1PB4 LINE L1 -1 6155 5946 1978 114 0 24 chr12 93339935 93340232 -50942257 - AluSq SINE Alu -6 307 18 5578 133 34 17 chr12 93340232 93341062 -50941427 - L1PB4 LINE L1 -210 5946 5101 576 268 43 12 chr12 93341835 93341999 -50940490 + MIR SINE MIR 2 170 -92 387 291 47 27 chr12 93342002 93342150 -50940339 - MLT1G LTR MaLR -4 563 413 533 237 15 38 chr12 93342260 93342391 -50940098 - MLT1G LTR MaLR -305 285 158 1603 125 54 51 chr12 93342503 93342799 -50939690 + MER57B LTR ERV1 137 433 -1 336 115 16 109 chr12 93343933 93344125 -50938364 + (CA)n Simple_repeat Simple_repeat 1 174 0 462 179 21 74 chr12 93344155 93344345 -50938144 + (CA)n Simple_repeat Simple_repeat 1 180 0 314 324 62 0 chr12 93344683 93344828 -50937661 + MER5B DNA MER1_type 9 162 -16 3221 205 69 19 chr12 93345855 93347040 -50935449 - L1MA7 LINE L1 -391 5900 4645 275 270 16 77 chr12 93347349 93347490 -50934999 - MIR SINE MIR -63 145 10 208 291 0 0 chr12 93347472 93347527 -50934962 - L2 LINE L2 -8 3264 3210 * 991 190 44 111 chr12 93347718 93348137 -50934352 + MLT1B LTR MaLR 1 344 -46 212 182 0 36 chr12 93348144 93348199 -50934290 + (CATA)n Simple_repeat Simple_repeat 4 56 0 202 314 76 17 chr12 93348519 93348637 -50933852 - L2 LINE L2 -213 3059 2935 25 0 0 0 chr12 93349310 93349335 -50933154 + AT_rich Low_complexity Low_complexity 1 25 0 183 329 50 43 chr12 93349684 93349824 -50932665 - MIR3 SINE MIR -65 143 3 249 313 53 15 chr12 93351169 93351300 -50931189 + L1ME LINE L1 5561 5696 -425 1400 235 101 41 chr12 93351400 93352384 -50930105 - L1MEc LINE L1 -3228 2987 2014 400 238 86 62 chr12 93352544 93352834 -50929655 - L1MEc LINE L1 -4387 2009 1713 479 248 60 0 chr12 93352992 93353125 -50929364 + MER112 DNA MER1_type 110 250 -10 261 246 102 30 chr12 93353147 93353314 -50929175 - L1ME LINE L1 -218 5903 5725 2160 259 22 2 chr12 93354278 93354872 -50927617 + L1 LINE L1 3744 4349 -1797 298 287 10 0 chr12 93354911 93355012 -50927477 + L1 LINE L1 4496 4597 -1549 623 147 0 0 chr12 93355028 93355123 -50927366 + MER4B-int LTR ERV1 204 298 -6460 2432 142 3 18 chr12 93355123 93355504 -50926985 + MER4B-int LTR ERV1 6379 6753 -5 952 209 59 24 chr12 93355508 93355848 -50926641 + MER4B LTR ERV1 1 352 -258 2274 211 48 6 chr12 93456974 93457449 -50825040 - LTR42 LTR ERVL 0 495 1 23 0 0 0 chr12 93458756 93458779 -50823710 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr12 93459233 93459279 -50823210 + AT_rich Low_complexity Low_complexity 1 46 0 195 314 100 0 chr12 93459766 93459836 -50822653 - MIR SINE MIR -107 155 79 2442 162 96 0 chr12 93460090 93460591 -50821898 - MER34C LTR ERV1 0 585 37 4751 156 63 7 chr12 93460838 93461693 -50820796 + MER4D LTR ERV1 1 903 0 3436 150 24 66 chr12 93461694 93462376 -50820113 + MER39B LTR ERV1 1 653 0 277 310 64 64 chr12 93462385 93462556 -50819933 - L2 LINE L2 -2 3311 3141 45 55 0 0 chr12 93462556 93462629 -50819860 + AT_rich Low_complexity Low_complexity 1 73 0 1574 166 31 7 chr12 93462737 93463027 -50819462 - LTR49 LTR ERV1 0 595 299 735 81 36 0 chr12 93463034 93463145 -50819344 - LTR49 LTR ERV1 -479 116 2 1904 190 22 0 chr12 93463285 93463653 -50818836 + MER57A LTR ERV1 1 376 -27 2158 137 23 9 chr12 93464673 93465023 -50817466 + THE1A LTR MaLR 1 355 0 11757 94 4 0 chr12 93465023 93466597 -50815892 + THE1A-int LTR MaLR 1 1580 0 2224 141 23 0 chr12 93466597 93466944 -50815545 + THE1A LTR MaLR 1 355 0 21 0 0 0 chr12 93467085 93467106 -50815383 + AT_rich Low_complexity Low_complexity 1 21 0 749 228 152 27 chr12 93467373 93467742 -50814747 - L1ME3A LINE L1 -10 6160 5746 219 384 0 0 chr12 93468091 93468164 -50814325 + L2 LINE L2 3241 3313 0 180 111 0 0 chr12 93468329 93468356 -50814133 + (TTTC)n Simple_repeat Simple_repeat 4 30 0 * 280 168 50 10 chr12 93468330 93468431 -50814058 + CT-rich Low_complexity Low_complexity 1 105 0 22 0 0 0 chr12 93468628 93468650 -50813839 + AT_rich Low_complexity Low_complexity 1 22 0 311 236 81 47 chr12 93471605 93471753 -50810736 + HAL1b LINE L1 907 1059 -289 374 245 37 80 chr12 93472517 93472705 -50809784 - L2 LINE L2 0 3313 3134 215 113 0 81 chr12 93472705 93472767 -50809722 + (TTATA)n Simple_repeat Simple_repeat 1 57 0 247 322 54 27 chr12 93472772 93472921 -50809568 - L2 LINE L2 -178 3135 2983 475 276 79 82 chr12 93473066 93473188 -50809301 - L2 LINE L2 -362 2952 2831 1801 147 7 0 chr12 93473188 93473461 -50809028 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr12 93473465 93473485 -50809004 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 475 276 79 82 chr12 93473485 93473698 -50808791 - L2 LINE L2 -486 2828 2613 1670 197 0 3 chr12 93473989 93474283 -50808206 + AluJo SINE Alu 1 293 -19 1053 203 50 89 chr12 93474327 93474478 -50808011 + MLT1A1 LTR MaLR 1 156 -209 1346 188 9 80 chr12 93474478 93474814 -50807675 + AluJo SINE Alu 1 312 0 1053 203 50 89 chr12 93474814 93475042 -50807447 + MLT1A1 LTR MaLR 156 365 0 511 300 93 42 chr12 93475149 93475386 -50807103 + MIR SINE MIR 14 262 0 1004 220 0 35 chr12 93476047 93476274 -50806215 - MER20 DNA MER1_type 0 219 1 354 313 68 20 chr12 93476408 93476555 -50805934 + MIR3 SINE MIR 20 173 -35 205 164 0 33 chr12 93477025 93477086 -50805403 + (TA)n Simple_repeat Simple_repeat 2 60 0 294 143 0 0 chr12 93477110 93477159 -50805330 + (TA)n Simple_repeat Simple_repeat 1 49 0 277 300 0 0 chr12 93477159 93477249 -50805240 + L1MC4 LINE L1 6614 6703 -1339 552 281 0 0 chr12 93477256 93477434 -50805055 + (TA)n Simple_repeat Simple_repeat 1 178 0 233 281 22 22 chr12 93477437 93477526 -50804963 - L1MC4 LINE L1 -1339 6703 6615 225 292 22 22 chr12 93477484 93477573 -50804916 + L1MC4 LINE L1 6615 6703 -1339 * 243 228 22 43 chr12 93477601 93477693 -50804796 + L1MC4 LINE L1 6614 6703 -1339 * 250 272 0 22 chr12 93477625 93477717 -50804772 - L1MC4 LINE L1 -1339 6703 6614 411 267 0 0 chr12 93477721 93477856 -50804633 + (TA)n Simple_repeat Simple_repeat 1 135 0 240 300 0 11 chr12 93477868 93477958 -50804531 + L1MC4 LINE L1 6615 6703 -1339 * 247 311 0 0 chr12 93477954 93478044 -50804445 + L1MC4 LINE L1 6614 6703 -1339 37 52 0 0 chr12 93478087 93478145 -50804344 + AT_rich Low_complexity Low_complexity 1 58 0 216 0 0 0 chr12 93478175 93478199 -50804290 + (TA)n Simple_repeat Simple_repeat 2 25 0 327 256 0 0 chr12 93478313 93478403 -50804086 + (CA)n Simple_repeat Simple_repeat 1 90 0 283 51 0 26 chr12 93478597 93478636 -50803853 + L1P5 LINE L1 5825 5862 -289 207 0 0 0 chr12 93478646 93478669 -50803820 + (TAGA)n Simple_repeat Simple_repeat 2 24 0 3222 93 0 22 chr12 93478675 93479168 -50803321 - L1P5 LINE L1 -377 6490 6009 * 5645 121 38 5 chr12 93479163 93480113 -50802376 - L1P5 LINE L1 -4491 2372 1392 756 220 11 11 chr12 93480090 93480276 -50802213 - L1P5 LINE L1 -6647 216 31 * 1917 159 72 20 chr12 93480728 93481073 -50801416 + THE1B LTR MaLR 2 364 0 1200 299 115 38 chr12 93482958 93483952 -50798537 - L2 LINE L2 -4 3309 2244 552 169 47 34 chr12 93484017 93484165 -50798324 + MER96B DNA MER1_type? 240 389 -28 966 274 45 103 chr12 93484186 93484671 -50797818 + L2 LINE L2 568 1024 -2290 1042 223 15 87 chr12 93484752 93485142 -50797347 - L1MA9 LINE L1 -38 6274 5913 406 285 82 24 chr12 93485142 93485349 -50797140 + L2 LINE L2 3016 3234 -79 1045 164 77 32 chr12 93485351 93485571 -50796918 + MER39 LTR ERV1 1 230 -477 2086 164 22 3 chr12 93485575 93485935 -50796554 + MER39 LTR ERV1 341 707 0 180 0 0 0 chr12 93486168 93486188 -50796301 + (A)n Simple_repeat Simple_repeat 1 20 0 531 215 0 0 chr12 93486193 93486300 -50796189 + MER39 LTR ERV1 601 707 0 254 122 20 41 chr12 93486309 93486358 -50796131 + L2 LINE L2 3266 3313 0 296 368 88 4 chr12 93486420 93486648 -50795841 - L2 LINE L2 -1115 2199 1953 269 308 17 8 chr12 93486676 93486793 -50795696 - L2 LINE L2 -1491 1823 1706 204 291 137 46 chr12 93487576 93487751 -50794738 + MIR SINE MIR 28 218 -44 923 102 0 7 chr12 93488258 93488395 -50794094 + L1MA2 LINE L1 6169 6304 0 1546 183 16 26 chr12 93489117 93489429 -50793060 - AluJb SINE Alu -3 309 1 10349 182 16 20 chr12 93489706 93492001 -50790488 - ERVL-B1 LTR ERVL -709 5055 2704 1861 148 3 10 chr12 93491997 93492295 -50790194 - ERVL-B1 LTR ERVL -3177 2587 2292 * 936 234 92 17 chr12 93492309 93492548 -50789941 - ERVL-B1 LTR ERVL -5503 261 5 2352 208 52 4 chr12 93492551 93493047 -50789442 - MLT2B1 LTR ERVL 0 520 1 22 35 0 0 chr12 93493309 93493338 -50789151 + AT_rich Low_complexity Low_complexity 1 29 0 5373 125 15 41 chr12 93493757 93494857 -50787632 + L1PA15 LINE L1 5089 6163 -2 32 67 0 0 chr12 93494899 93494959 -50787530 + AT_rich Low_complexity Low_complexity 1 60 0 1437 248 137 17 chr12 93495409 93495868 -50786621 - MLT1E2 LTR MaLR -2 624 111 421 242 152 8 chr12 93495866 93495998 -50786491 - MLT1E2 LTR MaLR -503 151 1 * 26 30 0 0 chr12 93496128 93496161 -50786328 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr12 93496356 93496379 -50786110 + AT_rich Low_complexity Low_complexity 1 23 0 2298 103 0 0 chr12 93496910 93497222 -50785267 + AluSx SINE Alu 1 312 0 30 27 0 0 chr12 93497804 93497841 -50784648 + AT_rich Low_complexity Low_complexity 1 37 0 1153 255 86 35 chr12 93497916 93498395 -50784094 + MLT1D LTR MaLR 3 505 0 2072 128 172 11 chr12 93498549 93498916 -50783573 - MSTC LTR MaLR 0 428 3 389 313 212 27 chr12 93499203 93499246 -50783243 + L2 LINE L2 2673 2707 -606 2507 62 0 0 chr12 93499246 93499550 -50782939 + AluY SINE Alu 1 304 -7 389 313 212 27 chr12 93499550 93500043 -50782446 + L2 LINE L2 2707 3313 0 2811 6 0 0 chr12 93500089 93500400 -50782089 - AluY SINE Alu 0 311 1 1034 300 34 40 chr12 93500805 93501441 -50781048 - L2 LINE L2 -18 3295 2665 278 250 0 13 chr12 93501619 93501695 -50780794 + MER116 DNA Mariner 1 75 -5 2011 103 43 3 chr12 93501841 93502123 -50780366 + AluSg1 SINE Alu 1 293 -16 23 54 0 0 chr12 93502393 93502430 -50780059 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr12 93502542 93502580 -50779909 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 93503014 93503035 -50779454 + AT_rich Low_complexity Low_complexity 1 21 0 1699 167 31 10 chr12 93503542 93503658 -50778831 + AluJo SINE Alu 1 113 -199 210 37 0 0 chr12 93503658 93503685 -50778804 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1699 167 31 10 chr12 93503685 93503861 -50778628 + AluJo SINE Alu 113 299 -13 1900 108 0 7 chr12 93503879 93504200 -50778289 + AluSg SINE Alu 17 335 0 27 0 0 0 chr12 93504958 93504985 -50777504 + AT_rich Low_complexity Low_complexity 1 27 0 994 214 41 48 chr12 93505053 93505324 -50777165 + AluJo SINE Alu 41 309 -3 359 136 30 0 chr12 93505566 93505632 -50776857 - L1MB3 LINE L1 -7 6176 6109 446 286 62 25 chr12 93506362 93506523 -50775966 + MIR SINE MIR 31 197 -65 1097 211 152 37 chr12 93506593 93507001 -50775488 - MSTB2 LTR MaLR 0 457 3 505 194 225 6 chr12 93507004 93507164 -50775325 - MSTB2-int LTR MaLR -1 1650 1456 8289 155 35 20 chr12 93507217 93508011 -50774478 - Ricksha DNA DNA -13 3233 2404 2266 135 26 13 chr12 93508011 93508397 -50774092 + L1PA13 LINE L1 5773 6163 0 8289 155 35 20 chr12 93508397 93509123 -50773366 - Ricksha DNA DNA -842 2404 1690 843 177 0 5 chr12 93509122 93509316 -50773173 - Ricksha DNA DNA -969 285 1 * 3953 259 49 73 chr12 93509318 93510857 -50771632 - MSTD-int LTR MaLR -232 1503 2 880 240 55 65 chr12 93510859 93511259 -50771230 - MSTD LTR MaLR 0 396 1 189 121 0 0 chr12 93511289 93511322 -50771167 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 264 333 147 6 chr12 93511617 93511794 -50770695 - L1ME LINE L1 -448 5722 5521 312 335 77 16 chr12 93511824 93512018 -50770471 - L1ME LINE L1 -2319 5489 5284 458 323 88 20 chr12 93512259 93512870 -50769619 - L1MC/D LINE L1 -747 5399 4854 859 182 25 98 chr12 93512928 93513164 -50769325 + MER20 DNA MER1_type 1 219 0 287 292 54 18 chr12 93513989 93514157 -50768332 - L1MC/D LINE L1 -1589 4557 4384 255 125 0 0 chr12 93514209 93514249 -50768240 + (TG)n Simple_repeat Simple_repeat 1 40 0 331 343 48 0 chr12 93514249 93514354 -50768135 - L1MC/D LINE L1 -2368 3778 3669 287 294 55 18 chr12 93517351 93517460 -50765029 + L1ME LINE L1 5537 5649 -472 241 157 0 20 chr12 93517667 93517718 -50764771 + L1ME4a LINE L1 5965 6014 -107 24 0 0 0 chr12 93517848 93517872 -50764617 + AT_rich Low_complexity Low_complexity 1 24 0 224 176 88 73 chr12 93518016 93518084 -50764405 + MER5A DNA MER1_type 100 168 -21 1517 171 18 75 chr12 93518103 93518477 -50764012 + MER67C LTR ERV1 26 403 -234 417 214 0 0 chr12 93518531 93518615 -50763874 + MER67D LTR ERV1 306 389 -125 2558 57 0 0 chr12 93518615 93518932 -50763557 + L1PA7 LINE L1 5330 5646 -508 972 49 0 0 chr12 93519032 93519177 -50763312 + L1PA7 LINE L1 6015 6159 0 1278 168 32 14 chr12 93519915 93520195 -50762294 - Ricksha DNA DNA -28 2826 2542 1742 43 0 0 chr12 93520802 93521011 -50761478 + L1PA7 LINE L1 5911 6119 -35 354 126 237 82 chr12 93521011 93521028 -50761461 + MER67D LTR ERV1 359 372 -142 441 0 0 0 chr12 93521028 93521077 -50761412 + (TAA)n Simple_repeat Simple_repeat 3 51 0 354 126 237 82 chr12 93521077 93521194 -50761295 + MER67D LTR ERV1 372 514 0 21 57 0 0 chr12 93522173 93522208 -50760281 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr12 93523342 93523375 -50759114 + AT_rich Low_complexity Low_complexity 1 33 0 2207 100 0 3 chr12 93523424 93523723 -50758766 + AluY SINE Alu 1 298 -13 207 0 0 0 chr12 93524132 93524155 -50758334 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 243 0 0 0 chr12 93524154 93524181 -50758308 + (GA)n Simple_repeat Simple_repeat 2 28 0 242 29 29 0 chr12 93524193 93524228 -50758261 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 39288 75 11 3 chr12 93524361 93530458 -50752031 + L1PA5 LINE L1 11 6154 0 246 325 63 16 chr12 93530869 93530995 -50751494 + L2 LINE L2 3137 3268 -4 35 41 0 0 chr12 93532085 93532134 -50750355 + AT_rich Low_complexity Low_complexity 1 49 0 1297 258 60 9 chr12 93534598 93534947 -50747542 - MLT1A2 LTR MaLR 0 374 8 2046 146 128 16 chr12 93535308 93535691 -50746798 + MSTA LTR MaLR 3 428 0 5573 189 25 1 chr12 93535912 93536894 -50745595 + L1MA3 LINE L1 8 1013 -6552 27041 36 5 0 chr12 93536900 93540981 -50741508 + L1PA3 LINE L1 2052 6150 -5 26 30 0 0 chr12 93540981 93541014 -50741475 + AT_rich Low_complexity Low_complexity 1 33 0 11140 153 29 43 chr12 93541014 93541581 -50740908 + L1MA3 LINE L1 2088 2662 -4903 2360 21 7 0 chr12 93541581 93541862 -50740627 + L1PA4 LINE L1 5870 6152 -3 11140 153 29 43 chr12 93541862 93545204 -50737285 + L1MA3 LINE L1 2662 5941 -1624 3478 105 21 39 chr12 93545204 93545816 -50736673 + L1MA3 LINE L1 7113 7719 -5 4994 157 9 34 chr12 93548821 93549760 -50732729 + L1PB3 LINE L1 6306 7207 -366 362 43 58 0 chr12 93549760 93549829 -50732660 + (TA)n Simple_repeat Simple_repeat 2 74 0 4994 157 9 34 chr12 93549829 93550188 -50732301 + L1PB3 LINE L1 7207 7573 0 310 317 65 27 chr12 93550189 93550375 -50732114 + L2 LINE L2 2782 2973 -340 27318 118 8 17 chr12 93550409 93555751 -50726738 + L1PA8 LINE L1 880 6165 -7 32 57 0 0 chr12 93555752 93555805 -50726684 + AT_rich Low_complexity Low_complexity 1 53 0 252 0 0 0 chr12 93556258 93556286 -50726203 + (TA)n Simple_repeat Simple_repeat 2 29 0 5322 44 11 5 chr12 93556286 93556930 -50725559 - L1PA5 LINE L1 -10 6144 5494 1689 62 21 4 chr12 93556930 93557172 -50725317 + L1P LINE L1 5148 5393 -753 188 280 80 0 chr12 93557211 93557261 -50725228 + L2 LINE L2 3219 3272 0 1323 206 133 41 chr12 93557815 93558280 -50724209 - Charlie4a DNA MER1_type 0 508 1 1968 113 11 7 chr12 93558921 93559254 -50723235 + AluSx SINE Alu 1 334 0 323 278 56 9 chr12 93559258 93559366 -50723123 + MIR SINE MIR 75 187 -75 1759 189 0 16 chr12 93559425 93559731 -50722758 - AluJb SINE Alu 0 312 12 181 372 39 0 chr12 93559781 93559859 -50722630 - L2 LINE L2 0 3313 3233 1947 115 37 0 chr12 93560241 93560535 -50721954 + AluSc SINE Alu 1 304 0 27 92 0 0 chr12 93560606 93560682 -50721807 + AT_rich Low_complexity Low_complexity 1 76 0 2042 192 53 122 chr12 93560819 93561568 -50720921 - LTR8A LTR ERV1 0 727 30 1268 252 44 22 chr12 93561824 93562189 -50720300 - MLT1A2 LTR MaLR 0 374 2 2046 236 98 54 chr12 93562388 93562429 -50720060 - L1M4b LINE L1 -5283 1576 1538 1871 161 27 24 chr12 93562429 93562765 -50719724 + MER1B DNA MER1_type 1 337 0 2046 236 98 54 chr12 93562765 93563446 -50719043 - L1M4b LINE L1 -5321 1538 822 308 153 0 34 chr12 93564129 93564188 -50718301 + L1MC4 LINE L1 6647 6703 -1339 1055 150 0 12 chr12 93564192 93564444 -50718045 + (TA)n Simple_repeat Simple_repeat 1 250 0 221 261 22 0 chr12 93564755 93564801 -50717688 + MIR SINE MIR 78 124 -84 320 316 61 18 chr12 93565720 93565834 -50716655 - MER5A DNA MER1_type -28 161 43 23 0 0 0 chr12 93566761 93566784 -50715705 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 93566917 93566945 -50715544 + AT_rich Low_complexity Low_complexity 1 28 0 1586 117 4 0 chr12 93567041 93567297 -50715192 - L1MA4 LINE L1 -8 6292 6036 626 342 29 47 chr12 93567339 93567789 -50714700 - MARNA DNA Mariner -31 555 114 190 302 63 0 chr12 93567857 93567920 -50714569 + L2 LINE L2 3205 3271 -1 25 0 0 0 chr12 93568330 93568355 -50714134 + AT_rich Low_complexity Low_complexity 1 25 0 34 99 0 0 chr12 93568601 93568712 -50713777 + AT_rich Low_complexity Low_complexity 1 111 0 2560 95 3 36 chr12 93569230 93569618 -50712871 - THE1C LTR MaLR 0 375 1 25 51 0 0 chr12 93569747 93569786 -50712703 + AT_rich Low_complexity Low_complexity 1 39 0 300 229 0 0 chr12 93570116 93570199 -50712290 + GA-rich Low_complexity Low_complexity 3 85 0 26 0 0 0 chr12 93570804 93570830 -50711659 + AT_rich Low_complexity Low_complexity 1 26 0 282 240 100 69 chr12 93570873 93570974 -50711515 + MIR SINE MIR 4 106 -102 647 313 116 50 chr12 93570983 93571447 -50711042 - L2 LINE L2 -2 3311 2817 358 293 0 98 chr12 93571433 93571597 -50710892 - L2 LINE L2 -634 2680 2533 * 7008 60 26 0 chr12 93572174 93573048 -50709441 - MER11D LTR ERVK 0 897 1 1212 291 61 16 chr12 93573076 93573519 -50708970 - L2 LINE L2 -777 2537 2075 1097 197 75 36 chr12 93573544 93573902 -50708587 - MLT1A2 LTR MaLR -1 395 1 450 258 124 65 chr12 93573904 93574179 -50708310 + MLT1D LTR MaLR 21 311 -194 266 324 131 21 chr12 93574212 93574357 -50708132 - MER5B DNA MER1_type -6 172 12 252 312 86 11 chr12 93574367 93574460 -50708029 + MIR SINE MIR 160 259 -3 * 261 286 41 31 chr12 93574452 93574550 -50707939 - MIR SINE MIR -103 159 61 22 70 0 0 chr12 93574609 93574652 -50707837 + AT_rich Low_complexity Low_complexity 1 43 0 186 152 30 0 chr12 93574868 93574901 -50707588 + MIR SINE MIR 54 87 -175 253 294 59 20 chr12 93574947 93575049 -50707440 - MIR SINE MIR -31 231 126 315 65 0 0 chr12 93575635 93575681 -50706808 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 7650 19 5 0 chr12 93575681 93577176 -50705313 - L1PA2 LINE L1 -11 6144 4647 6578 22 9 0 chr12 93577176 93577957 -50704532 + L1PA2 LINE L1 3871 4658 -1488 2168 115 47 47 chr12 93578217 93578581 -50703908 - THE1B LTR MaLR 0 364 1 2000 199 47 35 chr12 93580469 93580962 -50701527 - MLT1D LTR MaLR -2 503 5 252 100 0 0 chr12 93581040 93581080 -50701409 + (GGA)n Simple_repeat Simple_repeat 3 42 0 379 242 158 0 chr12 93581475 93581595 -50700894 - MIR SINE MIR -13 249 111 26 30 0 0 chr12 93582638 93582671 -50699818 + AT_rich Low_complexity Low_complexity 1 33 0 293 230 149 0 chr12 93582679 93582840 -50699649 - L1ME4a LINE L1 -175 5946 5762 350 361 87 5 chr12 93583223 93583591 -50698898 - L1MC4a LINE L1 -1903 5905 5508 16273 34 0 6 chr12 93583944 93585962 -50696527 - L1P LINE L1 -2280 3866 1859 7448 30 2 0 chr12 93585962 93587216 -50695273 + L1PA3 LINE L1 4921 6174 0 1572 187 14 17 chr12 93588494 93588783 -50693706 - AluJo SINE Alu -24 288 1 707 291 38 5 chr12 93589898 93590108 -50692381 - MIR SINE MIR -28 234 18 1825 176 18 9 chr12 93590397 93590737 -50691752 + MER61A LTR ERV1 1 343 0 414 314 81 17 chr12 93590856 93591028 -50691461 - MIR SINE MIR -46 216 34 208 319 104 32 chr12 93592342 93592513 -50689976 + MIR SINE MIR 30 216 -46 22 0 0 0 chr12 93596186 93596208 -50686281 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 93597045 93597074 -50685415 + AT_rich Low_complexity Low_complexity 1 29 0 3022 134 0 10 chr12 93597188 93597673 -50684816 + L1PA15 LINE L1 5350 5829 -336 392 308 14 7 chr12 93597673 93597819 -50684670 - ERVL LTR ERVL -11 5753 5607 2559 98 8 19 chr12 93598073 93598441 -50684048 - THE1B LTR MaLR 0 364 1 1191 315 74 31 chr12 93598463 93599206 -50683283 - ERVL LTR ERVL -3965 1799 1025 692 258 172 4 chr12 93599373 93599629 -50682860 - MLT1D LTR MaLR 0 505 207 539 300 81 49 chr12 93599899 93600269 -50682220 - MLT2E LTR ERVL -15 613 232 290 326 84 43 chr12 93602636 93603036 -50679453 - L2 LINE L2 0 3272 2829 268 286 49 119 chr12 93603050 93603235 -50679254 - L2 LINE L2 -1382 1932 1761 222 333 125 0 chr12 93603541 93603637 -50678852 + MIR3 SINE MIR 55 162 -46 226 315 22 11 chr12 93603780 93603869 -50678620 + L1M4 LINE L1 4501 4590 -1556 186 43 0 0 chr12 93604387 93604410 -50678079 + (T)n Simple_repeat Simple_repeat 1 23 0 6160 93 50 8 chr12 93606852 93607859 -50674630 - L1PA12 LINE L1 -15 6153 5135 223 229 14 29 chr12 93608083 93608153 -50674336 + (CATA)n Simple_repeat Simple_repeat 4 72 0 22 56 0 0 chr12 93608499 93608535 -50673954 + AT_rich Low_complexity Low_complexity 1 36 0 357 281 34 0 chr12 93608907 93608996 -50673493 + MLT1J LTR MaLR 38 129 -382 325 330 92 51 chr12 93609213 93609486 -50673003 - L1ME LINE L1 -519 5602 5319 308 231 39 13 chr12 93609883 93609961 -50672528 + MER110A LTR ERV1 91 170 -298 495 249 105 86 chr12 93610067 93610380 -50672109 + MER110 LTR ERV1 166 484 -7 26 50 0 0 chr12 93610492 93610532 -50671957 + AT_rich Low_complexity Low_complexity 1 40 0 189 100 60 0 chr12 93610536 93610586 -50671903 + (TA)n Simple_repeat Simple_repeat 1 53 0 1094 239 24 48 chr12 93610592 93610750 -50671739 - MLT2B1 LTR ERVL -37 377 217 1024 84 0 0 chr12 93610750 93610892 -50671597 - L1PA8 LINE L1 -1 6171 6030 1094 239 24 48 chr12 93610892 93611107 -50671382 - MLT2B1 LTR ERVL -197 217 4 1229 169 27 0 chr12 93611107 93611326 -50671163 - ERVL-B1 LTR ERVL -5 5759 5535 20551 205 65 29 chr12 93611333 93615863 -50666626 - ERVL-B1 LTR ERVL -1067 4697 2 252 191 0 90 chr12 93615864 93615953 -50666536 - ERVL-B1 LTR ERVL 0 520 440 1051 210 22 2 chr12 93615978 93616265 -50666224 - MER2 DNA MER2_type -1 344 2 978 260 64 60 chr12 93616267 93616278 -50666211 - MLT2B1 LTR ERVL -40 480 471 324 111 0 0 chr12 93616278 93616332 -50666157 + (CA)n Simple_repeat Simple_repeat 1 54 0 * 357 43 0 0 chr12 93616331 93616378 -50666111 + (GA)n Simple_repeat Simple_repeat 2 48 0 978 260 64 60 chr12 93616332 93616641 -50665848 - MLT2B1 LTR ERVL -49 471 108 2019 129 7 0 chr12 93616641 93616935 -50665554 + AluSx SINE Alu 1 296 -16 978 260 64 60 chr12 93616935 93617044 -50665445 - MLT2B1 LTR ERVL -412 108 1 24 85 0 0 chr12 93617873 93617932 -50664557 + AT_rich Low_complexity Low_complexity 1 59 0 1179 141 19 24 chr12 93617937 93618150 -50664339 - L1MA4 LINE L1 -22 6278 6067 1056 197 11 0 chr12 93618162 93618350 -50664139 + AluJb SINE Alu 113 302 -10 1965 158 6 20 chr12 93618667 93619009 -50663480 + MER1B DNA MER1_type 1 337 0 1819 126 3 55 chr12 93619520 93619830 -50662659 - AluSg SINE Alu -16 294 1 4417 161 72 12 chr12 93619900 93621626 -50660863 - L1MA7 LINE L1 -7 6284 4398 21 0 0 0 chr12 93622138 93622159 -50660330 + AT_rich Low_complexity Low_complexity 1 21 0 9451 27 1 0 chr12 93622986 93624881 -50657608 - L1PA3 LINE L1 -3 6152 4255 18554 34 0 1 chr12 93624883 93627159 -50655330 + L1PA3 LINE L1 1985 4259 -1887 22 70 0 0 chr12 93627435 93627478 -50655011 + AT_rich Low_complexity Low_complexity 1 43 0 542 307 111 9 chr12 93628078 93628303 -50654186 - ERVL-C1 LTR ERVL -5515 249 2 1346 226 7 71 chr12 93628304 93628728 -50653761 - MLT2C1 LTR ERVL 0 397 1 382 190 39 127 chr12 93628735 93628940 -50653549 + L1MEc LINE L1 2173 2359 -4037 1446 191 26 11 chr12 93628943 93629215 -50653274 - AluJo SINE Alu -15 297 22 758 261 112 14 chr12 93629241 93629659 -50652830 + L1MEc LINE L1 2297 2755 -3460 531 260 76 36 chr12 93629670 93629920 -50652569 + L1MEc LINE L1 2807 3066 -3149 1285 294 88 30 chr12 93629934 93630908 -50651581 + L1MEc LINE L1 3104 4134 -2081 2761 10 0 0 chr12 93631913 93632220 -50650269 + AluYa5 SINE Alu 1 307 -4 514 255 155 0 chr12 93632822 93632983 -50649506 - MER5A DNA MER1_type -3 186 1 343 184 13 13 chr12 93633527 93633603 -50648886 - LTR41 LTR ERVL -7 766 691 2553 258 46 24 chr12 93634429 93635494 -50646995 - L1MDa LINE L1 -2955 3585 2489 29 70 0 0 chr12 93635502 93635559 -50646930 + AT_rich Low_complexity Low_complexity 1 57 0 246 281 0 0 chr12 93635980 93636037 -50646452 - L1MDa LINE L1 -5963 758 702 180 0 0 0 chr12 93636085 93636105 -50646384 + (A)n Simple_repeat Simple_repeat 1 20 0 592 308 63 26 chr12 93636183 93636485 -50646004 - L2 LINE L2 -668 2646 2334 294 324 198 0 chr12 93636528 93636710 -50645779 - L2 LINE L2 -1711 1603 1386 22 0 0 0 chr12 93637574 93637596 -50644893 + AT_rich Low_complexity Low_complexity 1 22 0 423 130 43 98 chr12 93638050 93638142 -50644347 + MLT1A1 LTR MaLR 1 87 -278 1557 193 111 49 chr12 93639602 93640033 -50642456 - MER31B LTR ERV1 -8 458 1 937 301 57 64 chr12 93640050 93640522 -50641967 - MLT1J LTR MaLR -42 469 1 502 276 96 96 chr12 93640930 93640993 -50641496 - MLT1H LTR MaLR -2 553 491 444 144 11 0 chr12 93640993 93641083 -50641406 + L1MA4 LINE L1 6204 6294 -6 502 276 96 96 chr12 93641083 93641541 -50640948 - MLT1H LTR MaLR -63 492 32 365 281 138 30 chr12 93642086 93642253 -50640236 - MLT1H1 LTR MaLR -408 187 3 333 347 165 9 chr12 93642761 93643185 -50639304 + L3 LINE CR1 966 1455 -122 231 203 38 0 chr12 93643217 93643296 -50639193 + (TA)n Simple_repeat Simple_repeat 2 83 0 420 329 104 5 chr12 93644808 93645030 -50637459 + MIR SINE MIR 7 250 -12 2346 119 19 16 chr12 93645912 93646282 -50636207 + THE1C LTR MaLR 1 371 -4 195 378 71 34 chr12 93646413 93646736 -50635753 + L2 LINE L2 2422 2756 -558 286 297 27 81 chr12 93647576 93647761 -50634728 + MLT1K LTR MaLR 252 426 -162 416 284 130 0 chr12 93648832 93648994 -50633495 + MIR SINE MIR 19 201 -61 211 357 111 24 chr12 93650005 93650131 -50632358 - L2 LINE L2 0 3272 3136 209 319 0 43 chr12 93650204 93650298 -50632191 - L2 LINE L2 -173 3099 3010 205 152 0 0 chr12 93650911 93650944 -50631545 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 50 0 0 chr12 93651435 93651475 -50631014 + AT_rich Low_complexity Low_complexity 1 40 0 194 318 206 32 chr12 93651479 93651668 -50630821 - L2 LINE L2 -24 3289 3068 1417 205 20 8 chr12 93651683 93652058 -50630431 - LTR43 LTR ERV1 -23 579 169 323 73 0 0 chr12 93652060 93652101 -50630388 + MSTB LTR MaLR 386 426 0 466 161 25 0 chr12 93652101 93652182 -50630307 + MSTB-int LTR MaLR 1 83 -1568 498 42 0 0 chr12 93652182 93652253 -50630236 + AluSp/q SINE Alu 240 310 -3 1257 147 96 9 chr12 93652256 93652474 -50630015 + MSTA LTR MaLR 192 428 0 1266 279 89 28 chr12 93654247 93654753 -50627736 + MLT1F LTR MaLR 1 537 -5 273 277 85 0 chr12 93654960 93655054 -50627435 + MIR SINE MIR 71 172 -90 2446 200 25 5 chr12 93655059 93655574 -50626915 - Tigger7 DNA MER2_type -1 2486 4 828 231 84 7 chr12 93656869 93657142 -50625347 + MER33 DNA MER1_type 6 299 -25 21 0 0 0 chr12 93658005 93658026 -50624463 + AT_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr12 93658653 93658709 -50623780 + AT_rich Low_complexity Low_complexity 1 56 0 3973 43 0 5 chr12 93658750 93659273 -50623216 + L1P LINE L1 4813 5330 -821 341 353 20 27 chr12 93659469 93659619 -50622870 - MIR SINE MIR -112 150 2 534 212 127 29 chr12 93660007 93660266 -50622223 + MLT1E1 LTR MaLR 1 259 -367 771 311 50 53 chr12 93660356 93661221 -50621268 - MER51C-int LTR ERV1 -1313 4102 2897 250 354 23 8 chr12 93661547 93661677 -50620812 - MER51C-int LTR ERV1 -4958 2798 2667 602 264 71 59 chr12 93661947 93662269 -50620220 - MER51C-int LTR ERV1 -4066 2610 2082 364 79 95 16 chr12 93663656 93663719 -50618770 - MER51C-int LTR ERV1 -7746 70 3 462 204 70 184 chr12 93663719 93664062 -50618427 - MER51C LTR ERV1 0 634 331 268 284 0 11 chr12 93664325 93664420 -50618069 + L1MC4 LINE L1 6610 6703 -1339 211 279 12 0 chr12 93664422 93664508 -50617981 + (TA)n Simple_repeat Simple_repeat 1 87 0 5553 159 28 16 chr12 93664644 93666172 -50616317 - L1PA16 LINE L1 -1 6165 4622 2012 118 7 7 chr12 93666315 93666611 -50615878 + AluSx SINE Alu 1 296 -16 714 243 129 36 chr12 93666624 93666993 -50615496 - L1ME LINE L1 -475 5687 5285 256 249 122 49 chr12 93667056 93667261 -50615228 - L1ME LINE L1 -942 5204 4985 358 398 4 4 chr12 93667272 93667511 -50614978 - HERVL LTR ERVL -2115 3539 3301 592 313 63 20 chr12 93667652 93667976 -50614513 - HERVL LTR ERVL -1900 3096 2737 720 314 65 31 chr12 93668007 93668360 -50614129 - HERVL LTR ERVL -2319 2677 2313 1191 280 48 75 chr12 93668380 93668648 -50613841 - HERVL LTR ERVL -3548 1448 1201 1731 195 0 22 chr12 93668648 93668966 -50613523 - AluJo SINE Alu 0 312 2 1191 280 48 75 chr12 93668966 93669254 -50613235 - HERVL LTR ERVL -3795 1201 907 328 239 21 4 chr12 93669256 93669399 -50613090 - MLT1A1 LTR MaLR -167 198 1 23 68 0 0 chr12 93670082 93670126 -50612363 + AT_rich Low_complexity Low_complexity 1 44 0 936 243 39 5 chr12 93670166 93670372 -50612117 - MER58A DNA MER1_type -11 213 1 2157 130 0 9 chr12 93671010 93671325 -50611164 + AluSx SINE Alu 1 312 0 323 338 55 0 chr12 93671760 93671905 -50610584 + MLT1J2 LTR MaLR 24 176 -274 1043 185 10 30 chr12 93671929 93672129 -50610360 - MER58A DNA MER1_type -1 223 28 673 217 96 18 chr12 93672229 93672395 -50610094 - L1ME LINE L1 -503 5663 5485 1575 299 128 2 chr12 93672525 93673003 -50609486 + MLT1H LTR MaLR 12 549 0 274 301 9 22 chr12 93673189 93673295 -50609194 + MIR SINE MIR 54 158 -50 299 247 11 11 chr12 93673334 93673427 -50609062 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 6869 13 0 0 chr12 93673596 93674378 -50608111 - L1PA3 LINE L1 0 6155 5374 * 22139 30 0 0 chr12 93674372 93677065 -50605424 + L1PA3 LINE L1 2687 5379 -767 200 245 113 0 chr12 93677236 93677289 -50605200 - MIR3 SINE MIR -10 198 140 263 316 92 10 chr12 93677381 93677479 -50605010 - MIR3 SINE MIR -93 115 10 21 0 0 0 chr12 93677526 93677547 -50604942 + AT_rich Low_complexity Low_complexity 1 21 0 357 308 98 0 chr12 93679858 93679991 -50602498 - L2 LINE L2 0 3313 3168 1091 214 149 4 chr12 93680819 93681081 -50601408 + AluJo SINE Alu 1 300 -2 268 333 69 26 chr12 93681220 93681451 -50601038 + L1ME LINE L1 5317 5557 -605 2255 57 20 20 chr12 93681455 93681752 -50600737 + AluY SINE Alu 4 300 -11 22 0 0 0 chr12 93682181 93682203 -50600286 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 93682395 93682423 -50600066 + AT_rich Low_complexity Low_complexity 1 28 0 234 277 84 0 chr12 93682632 93682715 -50599774 - MLT1I LTR MaLR 0 409 320 255 292 88 26 chr12 93682884 93682997 -50599492 - MLT1J1 LTR MaLR -296 150 31 21 57 0 0 chr12 93683061 93683096 -50599393 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr12 93683196 93683221 -50599268 + AT_rich Low_complexity Low_complexity 1 25 0 643 271 65 19 chr12 93683260 93683474 -50599015 - MIR SINE MIR -1 261 38 2554 80 17 0 chr12 93683536 93683885 -50598604 - THE1A LTR MaLR 0 355 1 28 0 0 0 chr12 93684149 93684177 -50598312 + AT_rich Low_complexity Low_complexity 1 28 0 360 281 137 14 chr12 93685782 93685921 -50596568 - MER5B DNA MER1_type -22 156 1 2055 200 46 21 chr12 93686182 93686412 -50596077 - MER74C LTR ERVL 0 460 212 2446 137 3 13 chr12 93686412 93686791 -50595698 - THE1C LTR MaLR 0 375 1 2055 200 46 21 chr12 93686791 93686995 -50595494 - MER74C LTR ERVL -248 212 15 648 279 58 22 chr12 93686995 93687221 -50595268 - HERVL74 LTR ERVL -485 5200 4967 7169 201 37 10 chr12 93687301 93688744 -50593745 - HERVL74 LTR ERVL -3140 2545 1065 2650 69 5 54 chr12 93688904 93689247 -50593242 - L1PA6 LINE L1 0 6154 5832 2361 80 0 10 chr12 93689247 93689559 -50592930 - AluY SINE Alu -2 309 1 2650 69 5 54 chr12 93689559 93689620 -50592869 - L1PA6 LINE L1 -322 5832 5770 27396 58 8 3 chr12 93689637 93694000 -50588489 - L1PA4 LINE L1 -3 6467 2080 1320 155 0 5 chr12 93694051 93694264 -50588225 - L1PA4 LINE L1 -6240 221 10 563 230 62 56 chr12 93694277 93694455 -50588034 - HERVL74 LTR ERVL -2571 985 807 1153 238 42 28 chr12 93695184 93695776 -50586713 + L1MC3 LINE L1 2049 2478 -3948 10970 135 14 29 chr12 93695776 93697596 -50584893 - Tigger1 DNA MER2_type -2 2416 623 21 0 0 0 chr12 93697596 93697617 -50584872 + AT_rich Low_complexity Low_complexity 1 21 0 751 144 0 0 chr12 93697634 93697759 -50584730 + L1P LINE L1 3821 3945 -2201 1422 219 98 10 chr12 93697759 93698148 -50584341 - LTR22 LTR ERVK 0 509 87 8007 96 2 3 chr12 93698214 93700201 -50582288 + L1PA7 LINE L1 4164 6154 0 3320 186 13 11 chr12 93700209 93700826 -50581663 - Tigger1 DNA MER2_type -1800 618 1 1018 240 107 52 chr12 93700940 93701286 -50581203 - MLT1A1 LTR MaLR 0 365 1 2695 268 39 28 chr12 93701289 93702259 -50580230 + L1MC3 LINE L1 2730 3715 -2711 2058 157 19 19 chr12 93702259 93702634 -50579855 - THE1C LTR MaLR 0 375 1 2695 268 39 28 chr12 93702634 93702828 -50579661 + L1MC3 LINE L1 3715 3906 -2520 3132 37 0 0 chr12 93703325 93703702 -50578787 - L1PA3 LINE L1 -3 6152 5776 4102 25 2 0 chr12 93703702 93704191 -50578298 + L1PA3 LINE L1 5287 5776 -379 3571 249 52 36 chr12 93704183 93704746 -50577743 + L1MC3 LINE L1 3892 4445 -1981 * 360 0 0 0 chr12 93704746 93704786 -50577703 + (TG)n Simple_repeat Simple_repeat 1 40 0 3571 249 52 36 chr12 93704786 93705489 -50577000 + L1MC3 LINE L1 4445 5178 -1248 1682 205 21 18 chr12 93705489 93705825 -50576664 - MLT1A1 LTR MaLR 0 365 29 5412 214 45 10 chr12 93705825 93707163 -50575326 + L1MC3 LINE L1 5514 5667 -759 315 111 0 0 chr12 93707165 93707210 -50575279 - MLT2C1 LTR ERVL -2 395 351 263 281 16 0 chr12 93707212 93707276 -50575213 + (TG)n Simple_repeat Simple_repeat 2 66 0 201 39 0 0 chr12 93707276 93707302 -50575187 + (GA)n Simple_repeat Simple_repeat 2 27 0 1549 256 12 71 chr12 93707308 93707801 -50574688 - MLT2B1 LTR ERVL -56 464 1 1773 150 68 6 chr12 93707801 93708140 -50574349 - ERVL-B1 LTR ERVL -7 5757 5398 2096 189 76 11 chr12 93708169 93708603 -50573886 - ERVL LTR ERVL -2105 3659 3198 1310 194 16 8 chr12 93708601 93708848 -50573641 - ERVL LTR ERVL -2800 2964 2716 * 4172 217 14 2 chr12 93708864 93709809 -50572680 + L1P LINE L1 4351 5306 -840 2564 214 58 32 chr12 93709830 93710451 -50572038 - ERVL LTR ERVL -4094 1670 1034 1201 239 24 58 chr12 93710461 93710837 -50571652 + MLT1A2 LTR MaLR 1 363 -11 458 123 9 28 chr12 93710911 93711017 -50571472 + (TA)n Simple_repeat Simple_repeat 2 105 0 1022 222 43 27 chr12 93711017 93711344 -50571145 + L1MC3 LINE L1 6571 6861 -924 774 193 70 0 chr12 93711357 93711544 -50570945 + L1MC3 LINE L1 7542 7741 -44 545 317 40 35 chr12 93712231 93712578 -50569911 - MLT2F LTR ERVL 0 663 315 296 179 33 15 chr12 93712557 93712636 -50569853 - MLT2E LTR ERVL -542 86 5 * 297 278 53 45 chr12 93712755 93712888 -50569601 + MIR SINE MIR 71 204 -58 1888 220 58 60 chr12 93712908 93713463 -50569026 + MLT2B3 LTR ERVL 1 554 0 214 200 0 0 chr12 93713478 93713518 -50568971 + L2 LINE L2 3256 3295 -18 823 202 49 20 chr12 93714240 93714443 -50568046 - MER6B DNA MER2_type -1 209 1 1260 248 90 57 chr12 93716071 93716559 -50565930 + MLT1D LTR MaLR 1 504 -1 230 326 80 51 chr12 93716653 93716791 -50565698 - L2 LINE L2 -213 3059 2918 479 297 61 36 chr12 93717030 93717195 -50565294 + MER63A DNA MER1_type 41 209 -1 281 313 53 1 chr12 93717960 93718098 -50564391 - L2 LINE L2 -5 3308 3150 913 221 0 54 chr12 93719056 93719260 -50563229 + AluJo SINE Alu 1 193 -119 999 186 6 0 chr12 93719271 93719443 -50563046 + FRAM SINE Alu 1 168 -8 414 250 0 0 chr12 93722580 93722692 -50559797 + L1M4 LINE L1 2669 2780 -3366 270 301 78 0 chr12 93722979 93723082 -50559407 + MIR SINE MIR 29 139 -123 409 287 128 78 chr12 93723106 93723465 -50559024 + MLT1L LTR MaLR 3 379 -236 1105 281 43 26 chr12 93723680 93724288 -50558201 + L2 LINE L2 2690 3311 -2 332 298 0 0 chr12 93724551 93724635 -50557854 - L2 LINE L2 -5 3308 3225 32 67 0 0 chr12 93725039 93725099 -50557390 + AT_rich Low_complexity Low_complexity 1 60 0 716 87 0 0 chr12 93725536 93725639 -50556850 - L1PA5 LINE L1 -1 6153 6051 542 180 63 0 chr12 93725639 93725744 -50556745 + MER66A LTR ERV1 284 395 -83 231 114 0 0 chr12 93725744 93725779 -50556710 + (A)n Simple_repeat Simple_repeat 1 35 0 234 0 0 0 chr12 93725862 93725888 -50556601 + (A)n Simple_repeat Simple_repeat 1 26 0 848 248 69 47 chr12 93726673 93726991 -50555498 - MLT1A1 LTR MaLR 0 365 41 280 280 49 24 chr12 93727355 93727539 -50554950 + ERVL LTR ERVL 1758 1926 -3559 501 293 0 0 chr12 93727667 93727790 -50554699 + ERVL LTR ERVL 2307 2429 -3225 372 269 31 0 chr12 93727802 93727932 -50554557 + L1MC3 LINE L1 2640 2773 -3373 5052 108 28 1 chr12 93727939 93728725 -50553764 - L1P LINE L1 -2777 3369 2563 6058 80 12 3 chr12 93728727 93729972 -50552517 + L1P3 LINE L1 4519 5775 -379 * 7775 236 68 27 chr12 93729959 93731984 -50550505 + L1MC3 LINE L1 4479 6684 -1101 261 0 0 0 chr12 93731984 93732013 -50550476 + (TA)n Simple_repeat Simple_repeat 2 30 0 7775 236 68 27 chr12 93732013 93733154 -50549335 + L1MC3 LINE L1 6684 7777 -8 1748 164 25 0 chr12 93735944 93736230 -50546259 - AluJb SINE Alu -19 293 1 1024 309 65 37 chr12 93738121 93738580 -50543909 + MLT1K LTR MaLR 7 478 -110 714 286 100 5 chr12 93738860 93739080 -50543409 + MIR SINE MIR 10 250 -12 37 52 0 0 chr12 93739092 93739150 -50543339 + AT_rich Low_complexity Low_complexity 1 58 0 184 304 36 0 chr12 93739488 93739544 -50542945 - L2 LINE L2 -211 3061 3004 27 49 0 0 chr12 93740149 93740190 -50542299 + AT_rich Low_complexity Low_complexity 1 41 0 9285 13 0 0 chr12 93741038 93742897 -50539592 - L1HS LINE L1 -3 6152 4294 6110 24 0 0 chr12 93742895 93743606 -50538883 + L1HS LINE L1 3568 4278 -1868 * 193 29 59 0 chr12 93743910 93743944 -50538545 + (TTA)n Simple_repeat Simple_repeat 1 36 0 8821 26 0 0 chr12 93743945 93745742 -50536747 - L1PA3 LINE L1 -18 6137 4340 3540 21 5 0 chr12 93745742 93746160 -50536329 + L1PA3 LINE L1 3902 4321 -1825 216 312 32 81 chr12 93746964 93747150 -50535339 - L2 LINE L2 -740 2574 2398 951 269 132 35 chr12 93747308 93748248 -50534241 + L1M4 LINE L1 3035 4065 -2081 429 339 104 0 chr12 93748254 93748484 -50534005 - L2 LINE L2 -1074 2240 1987 2033 132 3 19 chr12 93748488 93748799 -50533690 + AluSq SINE Alu 3 308 -5 714 148 16 8 chr12 93749249 93749377 -50533112 + L1MB3 LINE L1 6054 6182 -1 423 219 18 18 chr12 93749380 93749494 -50532995 + Charlie2 DNA MER1_type 2707 2820 -42 2346 68 0 29 chr12 93749919 93750229 -50532260 + AluY SINE Alu 1 301 -10 615 159 136 0 chr12 93750639 93750771 -50531718 + ORSL DNA AcHobo 14 163 -112 28 61 0 0 chr12 93751728 93751777 -50530712 + AT_rich Low_complexity Low_complexity 1 49 0 306 50 0 0 chr12 93751989 93752029 -50530460 + (TG)n Simple_repeat Simple_repeat 1 40 0 28 48 0 0 chr12 93752120 93752162 -50530327 + AT_rich Low_complexity Low_complexity 1 42 0 483 341 36 0 chr12 93752757 93752895 -50529594 + MER91A DNA MER1_type 3 145 -51 189 313 0 0 chr12 93753165 93753213 -50529276 + L2 LINE L2 3207 3254 -18 258 309 32 43 chr12 93754449 93754543 -50527946 - L2 LINE L2 -65 3207 3115 781 259 3 102 chr12 93755180 93755485 -50527004 + MLT1I LTR MaLR 100 374 -35 23 0 0 0 chr12 93755689 93755712 -50526777 + AT_rich Low_complexity Low_complexity 1 23 0 1001 239 4 29 chr12 93756129 93756368 -50526121 - MER8 DNA MER2_type 0 239 7 2736 84 3 0 chr12 93756552 93756920 -50525569 - L1PA13 LINE L1 -457 5706 5338 3156 103 11 2 chr12 93756920 93757376 -50525113 + L1PA13 LINE L1 5696 6163 0 23 0 0 0 chr12 93758202 93758225 -50524264 + AT_rich Low_complexity Low_complexity 1 23 0 243 286 19 19 chr12 93758726 93758831 -50523658 - L1ME LINE L1 -275 5889 5785 28 48 0 0 chr12 93758875 93758917 -50523572 + AT_rich Low_complexity Low_complexity 1 42 0 352 287 142 26 chr12 93759298 93759682 -50522807 - L1M4c LINE L1 -810 1697 1263 251 266 0 43 chr12 93760089 93760183 -50522306 + L1MC4 LINE L1 6614 6703 -1339 233 310 23 0 chr12 93760143 93760230 -50522259 - L1MC4 LINE L1 -1339 6703 6615 * 233 257 27 0 chr12 93760243 93760317 -50522172 - L1MC4 LINE L1 -1339 6703 6628 255 281 61 43 chr12 93761033 93761197 -50521292 + HAL1b LINE L1 746 912 -436 305 216 133 110 chr12 93761311 93761566 -50520923 + HAL1 LINE L1 2246 2506 -1 190 306 167 0 chr12 93763560 93763668 -50518821 - MIR SINE MIR -11 251 126 320 348 59 32 chr12 93763773 93763994 -50518495 - L3 LINE CR1 -5 1572 1346 2048 127 0 0 chr12 93764053 93764389 -50518100 - AluSx SINE Alu 0 336 1 264 268 0 0 chr12 93764447 93764503 -50517986 + MLT1F LTR MaLR 24 79 -463 334 265 34 17 chr12 93764717 93764834 -50517655 + MLT1I LTR MaLR 431 549 0 445 309 130 22 chr12 93765103 93765333 -50517156 - MIR SINE MIR 0 262 8 193 294 24 47 chr12 93766151 93766236 -50516253 + MIR SINE MIR 3 85 -177 1098 174 0 55 chr12 93766247 93766466 -50516023 + Tigger1 DNA MER2_type 25 231 -2187 5020 129 26 4 chr12 93766497 93768388 -50514101 - L1PA15 LINE L1 0 6165 4278 998 179 47 0 chr12 93768390 93768580 -50513909 + L1PA15-16 LINE L1 2382 2580 -4269 579 227 113 7 chr12 93768601 93768751 -50513738 - FRAM SINE Alu 0 166 1 537 292 47 23 chr12 93768757 93768928 -50513561 + MIR SINE MIR 84 258 -4 186 103 0 0 chr12 93768930 93768959 -50513530 + (ATG)n Simple_repeat Simple_repeat 1 29 0 255 360 79 5 chr12 93771113 93771316 -50511173 - L1ME LINE L1 -315 5855 5638 1340 209 179 21 chr12 93771547 93771983 -50510506 - MLT1D LTR MaLR 0 505 1 1818 143 34 20 chr12 93772209 93772566 -50509923 - L1MA2 LINE L1 0 6304 5943 8663 203 75 9 chr12 93772570 93774318 -50508171 - L1M1 LINE L1 -5689 1876 13 402 265 110 84 chr12 93774418 93774451 -50508038 - L1ME LINE L1 -1102 5044 5013 2678 92 20 3 chr12 93774451 93774809 -50507680 - THE1B LTR MaLR 0 364 1 402 265 110 84 chr12 93774809 93775183 -50507306 - L1ME LINE L1 -1133 5013 4614 2206 82 4 4 chr12 93775183 93775494 -50506995 - AluSc SINE Alu 0 311 1 402 265 110 84 chr12 93775494 93775658 -50506831 - L1ME LINE L1 -1532 4614 4456 2072 75 0 19 chr12 93775678 93775963 -50506526 - AluY SINE Alu 0 300 21 294 183 0 0 chr12 93776290 93776361 -50506128 + T-rich Low_complexity Low_complexity 1 71 0 246 128 0 0 chr12 93777959 93777998 -50504491 + (CCG)n Simple_repeat Simple_repeat 2 40 0 295 279 146 28 chr12 93778207 93778461 -50504028 - L1ME LINE L1 -2178 3968 3685 24 0 0 0 chr12 93778502 93778526 -50503963 + AT_rich Low_complexity Low_complexity 1 24 0 509 293 112 70 chr12 93778621 93779376 -50503113 - L1ME LINE L1 -2635 3511 2652 2085 104 34 57 chr12 93779385 93779769 -50502720 + THE1C LTR MaLR 1 375 0 341 357 53 11 chr12 93780197 93780460 -50502029 - L1M2 LINE L1 -4248 2859 2586 5057 175 36 10 chr12 93780944 93781091 -50501398 - L1MA9 LINE L1 -1 6311 6169 270 56 0 0 chr12 93781091 93781127 -50501362 + (TG)n Simple_repeat Simple_repeat 1 36 0 5057 175 36 10 chr12 93781127 93782213 -50500276 - L1MA9 LINE L1 -143 6169 5046 1445 176 3 39 chr12 93782220 93782526 -50499963 + L1MA9 LINE L1 4757 5051 -1095 * 1815 196 21 41 chr12 93782509 93782930 -50499559 - L1M2 LINE L1 -5703 1327 1 23 0 0 0 chr12 93782942 93782965 -50499524 + AT_rich Low_complexity Low_complexity 1 23 0 569 231 54 0 chr12 93785744 93785891 -50496598 - MER105 DNA DNA -45 159 5 1874 247 21 38 chr12 93785924 93786450 -50496039 - LTR40a LTR ERVL -2 517 1 1843 206 19 40 chr12 93788065 93788541 -50493948 + L1MB8 LINE L1 5603 6068 -110 289 295 0 2 chr12 93788546 93788632 -50493857 + AluSg/x SINE Alu 137 205 -97 596 165 8 16 chr12 93788658 93788779 -50493710 + L1MB8 LINE L1 6059 6178 0 224 169 0 17 chr12 93789702 93789761 -50492728 + (CA)n Simple_repeat Simple_repeat 2 59 0 231 408 27 27 chr12 93789912 93790098 -50492391 - L2 LINE L2 -40 3273 3085 249 33 0 0 chr12 93790098 93790128 -50492361 + (TG)n Simple_repeat Simple_repeat 1 30 0 231 408 27 27 chr12 93790128 93790277 -50492212 - L2 LINE L2 -227 3086 2938 202 250 0 0 chr12 93790639 93790675 -50491814 + L2 LINE L2 3210 3245 -27 644 364 133 23 chr12 93790912 93791574 -50490915 - L2 LINE L2 -369 2945 2211 231 348 54 0 chr12 93791909 93792001 -50490488 - L2 LINE L2 -39 3233 3137 2618 141 0 2 chr12 93792449 93792860 -50489629 - L1PA15 LINE L1 0 6165 5756 805 290 164 20 chr12 93793021 93793375 -50489114 + L2 LINE L2 2631 2932 -381 652 301 72 16 chr12 93793375 93793803 -50488686 + LTR16A1 LTR ERVL 4 455 -2 805 290 164 20 chr12 93793803 93794042 -50488447 + L2 LINE L2 2932 3313 0 1801 118 63 17 chr12 93794091 93794378 -50488111 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr12 93794634 93794655 -50487834 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 93795646 93795669 -50486820 + AT_rich Low_complexity Low_complexity 1 23 0 1009 198 53 5 chr12 93795703 93795910 -50486579 + MER20 DNA MER1_type 1 217 -2 217 276 17 0 chr12 93796269 93796327 -50486162 - L2 LINE L2 -6 3307 3249 1922 183 5 35 chr12 93796632 93797032 -50485457 + MLT1B LTR MaLR 1 388 -2 243 374 30 0 chr12 93797075 93797174 -50485315 + MIR3 SINE MIR 65 166 -42 24 0 0 0 chr12 93797423 93797447 -50485042 + AT_rich Low_complexity Low_complexity 1 24 0 272 47 0 23 chr12 93798579 93798622 -50483867 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 300 275 44 62 chr12 93798654 93798814 -50483675 + MLT1J LTR MaLR 90 246 -265 2906 92 39 16 chr12 93799653 93800087 -50482402 - MLT2A1 LTR ERVL 0 444 1 749 286 71 44 chr12 93800873 93801282 -50481207 + MLT1J LTR MaLR 21 440 -71 197 326 61 10 chr12 93802356 93802454 -50480035 - L2 LINE L2 -32 3240 3138 22 56 0 0 chr12 93802608 93802644 -50479845 + AT_rich Low_complexity Low_complexity 1 36 0 270 0 0 0 chr12 93802889 93802919 -50479570 + (GA)n Simple_repeat Simple_repeat 1 30 0 210 37 0 0 chr12 93804179 93804206 -50478283 + (CAA)n Simple_repeat Simple_repeat 1 27 0 201 338 58 58 chr12 93804935 93805175 -50477314 - L2 LINE L2 -461 2853 2614 2204 116 0 0 chr12 93807811 93808112 -50474377 + AluSc SINE Alu 1 301 -8 749 246 17 17 chr12 93808257 93808432 -50474057 + FAM SINE Alu 1 175 0 452 362 27 7 chr12 93809116 93809265 -50473224 + L2 LINE L2 3121 3272 0 270 192 26 59 chr12 93810504 93810605 -50471884 - MLT1I LTR MaLR -8 422 318 2304 73 0 14 chr12 93810722 93811033 -50471456 - AluY SINE Alu 0 307 1 1777 219 62 7 chr12 93811242 93811680 -50470809 + MLT1C LTR MaLR 6 467 0 23 0 0 0 chr12 93812230 93812253 -50470236 + AT_rich Low_complexity Low_complexity 1 23 0 230 314 86 0 chr12 93816787 93816857 -50465632 - L2 LINE L2 -56 3216 3141 223 225 28 0 chr12 93818909 93818980 -50463509 + (TTAAA)n Simple_repeat Simple_repeat 5 77 0 2739 102 10 5 chr12 93819225 93819626 -50462863 + L1PA13 LINE L1 5754 6156 -7 258 273 273 14 chr12 93820282 93820425 -50462064 - MIR SINE MIR -42 220 41 193 308 44 22 chr12 93821408 93821499 -50460990 + L2 LINE L2 3177 3269 -44 875 226 72 117 chr12 93821510 93822111 -50460378 - MER34C LTR ERV1 0 585 12 350 281 18 13 chr12 93823033 93823159 -50459330 + MIR SINE MIR 21 149 -63 22 0 0 0 chr12 93823981 93824003 -50458486 + AT_rich Low_complexity Low_complexity 1 22 0 535 161 17 0 chr12 93825339 93825457 -50457032 + (TAGA)n Simple_repeat Simple_repeat 1 120 0 362 355 65 35 chr12 93825578 93825919 -50456570 + L1MEc LINE L1 34 384 -6012 1615 230 38 69 chr12 93826266 93826414 -50456075 + L1ME2 LINE L1 5399 5550 -614 2068 122 162 11 chr12 93826414 93826784 -50455705 + MSTA LTR MaLR 1 426 -2 1615 230 38 69 chr12 93826784 93827214 -50455275 + L1ME2 LINE L1 5550 5959 -205 234 128 0 0 chr12 93827269 93827308 -50455181 + MER3 DNA MER1_type 11 49 -160 302 231 0 0 chr12 93827332 93827410 -50455079 + L1ME2 LINE L1 6086 6163 -1 809 267 69 9 chr12 93828549 93828781 -50453708 + MIR SINE MIR 11 256 -6 268 248 152 24 chr12 93829030 93829155 -50453334 - MIR SINE MIR 0 262 122 6887 55 3 22 chr12 93831203 93832873 -50449616 + L1PA7 LINE L1 4504 6153 -1 236 271 100 0 chr12 93833149 93833219 -50449270 + MIR SINE MIR 116 192 -70 236 351 69 0 chr12 93833302 93833433 -50449056 - L2 LINE L2 -1019 2295 2156 23 78 0 0 chr12 93833469 93833520 -50448969 + AT_rich Low_complexity Low_complexity 1 51 0 2186 113 0 0 chr12 93836309 93836610 -50445879 + AluSc SINE Alu 1 301 -8 758 236 17 17 chr12 93836761 93836935 -50445554 + FAM SINE Alu 1 44 -5 452 362 27 7 chr12 93837618 93837767 -50444722 + L2 LINE L2 3121 3272 0 276 192 26 59 chr12 93839007 93839108 -50443381 - MLT1I LTR MaLR -8 422 318 2264 73 0 14 chr12 93839225 93839536 -50442953 - AluY SINE Alu 0 307 1 1760 221 62 7 chr12 93839745 93840183 -50442306 + MLT1C LTR MaLR 6 467 0 23 0 0 0 chr12 93840734 93840757 -50441732 + AT_rich Low_complexity Low_complexity 1 23 0 230 314 86 0 chr12 93845290 93845360 -50437129 - L2 LINE L2 -56 3216 3141 234 161 25 62 chr12 93847430 93847511 -50434978 + (TAAA)n Simple_repeat Simple_repeat 2 79 0 2705 105 10 5 chr12 93847737 93848138 -50434351 + L1PA13 LINE L1 5754 6156 -7 263 273 273 14 chr12 93848794 93848937 -50433552 - MIR SINE MIR -42 220 41 196 308 44 22 chr12 93849923 93850014 -50432475 + L2 LINE L2 3177 3269 -44 883 230 70 115 chr12 93850025 93850626 -50431863 - MER34C LTR ERV1 0 585 12 338 291 18 13 chr12 93851548 93851674 -50430815 + MIR SINE MIR 21 149 -63 22 0 0 0 chr12 93852496 93852518 -50429971 + AT_rich Low_complexity Low_complexity 1 22 0 535 161 17 0 chr12 93853854 93853972 -50428517 + (TAGA)n Simple_repeat Simple_repeat 1 120 0 338 358 65 35 chr12 93854093 93854434 -50428055 + L1MEc LINE L1 34 384 -6012 1567 233 38 69 chr12 93854781 93854929 -50427560 + L1ME2 LINE L1 5399 5550 -614 2044 124 162 11 chr12 93854929 93855299 -50427190 + MSTA LTR MaLR 1 426 -2 1567 233 38 69 chr12 93855299 93855729 -50426760 + L1ME2 LINE L1 5550 5959 -205 234 128 0 0 chr12 93855784 93855823 -50426666 + MER3 DNA MER1_type 11 49 -160 302 231 0 0 chr12 93855847 93855925 -50426564 + L1ME2 LINE L1 6086 6163 -1 809 267 69 9 chr12 93857065 93857297 -50425192 + MIR SINE MIR 11 256 -6 274 231 44 33 chr12 93857580 93857671 -50424818 - MIR SINE MIR -49 213 122 6907 53 3 22 chr12 93859719 93861388 -50421101 + L1PA7 LINE L1 4504 6153 -1 235 246 108 0 chr12 93861670 93861735 -50420754 + MIR SINE MIR 121 192 -70 236 351 69 0 chr12 93861818 93861949 -50420540 - L2 LINE L2 -1019 2295 2156 30 59 0 0 chr12 93861985 93862036 -50420453 + AT_rich Low_complexity Low_complexity 1 51 0 25 31 0 0 chr12 93863093 93863125 -50419364 + AT_rich Low_complexity Low_complexity 1 32 0 189 231 19 106 chr12 93863720 93863824 -50418665 - MIR SINE MIR -30 232 138 2252 233 58 3 chr12 93863851 93864785 -50417704 + MER65A-int LTR ERV1 3763 4852 -19 2310 164 11 42 chr12 93864799 93865256 -50417233 + MER65A LTR ERV1 1 443 -2 751 194 97 11 chr12 93866326 93866501 -50415988 - LTR47A LTR ERVL -2 450 261 1269 211 3 53 chr12 93866850 93867149 -50415340 - MER74C LTR ERVL -1 459 176 2203 160 100 32 chr12 93867943 93868412 -50414077 - MER67D LTR ERV1 -9 505 5 252 0 0 0 chr12 93868574 93868602 -50413887 + (T)n Simple_repeat Simple_repeat 1 28 0 25 31 0 0 chr12 93869401 93869433 -50413056 + AT_rich Low_complexity Low_complexity 1 32 0 189 231 19 106 chr12 93870028 93870132 -50412357 - MIR SINE MIR -30 232 138 251 240 0 0 chr12 93870159 93870209 -50412280 + MER65-int LTR ERV1 3763 3812 -1059 2059 157 88 2 chr12 93870854 93871250 -50411239 - MSTB1 LTR MaLR -2 430 1 432 353 92 16 chr12 93872337 93872586 -50409903 - L3b LINE CR1 -20 1563 1296 263 373 81 6 chr12 93872617 93872778 -50409711 - MIR3 SINE MIR -20 188 16 1210 189 63 3 chr12 93873897 93874182 -50408307 + L1MA8 LINE L1 5985 6286 -5 310 261 148 9 chr12 93874543 93874658 -50407831 + L2 LINE L2 3137 3267 -5 531 337 83 11 chr12 93875828 93876228 -50406261 - L2 LINE L2 -197 3116 2684 2407 97 0 3 chr12 93876854 93877164 -50405325 - AluSq SINE Alu -4 309 1 252 330 62 10 chr12 93877199 93877296 -50405193 + L2 LINE L2 2954 3055 -217 924 282 55 37 chr12 93877667 93878766 -50403723 + L1MCc LINE L1 1129 2445 -4677 1778 164 0 11 chr12 93878843 93879129 -50403360 + AluSx SINE Alu 1 283 -29 28 29 0 0 chr12 93879136 93879171 -50403318 + AT_rich Low_complexity Low_complexity 1 35 0 312 222 20 20 chr12 93879340 93879439 -50403050 + L1MCc LINE L1 2741 2839 -4283 22 56 0 0 chr12 93879479 93879515 -50402974 + AT_rich Low_complexity Low_complexity 1 36 0 2331 62 0 19 chr12 93879931 93880239 -50402250 - AluY SINE Alu -9 302 1 2003 81 28 3 chr12 93880252 93880536 -50401953 + L1PA13 LINE L1 5867 6157 -6 1983 154 31 40 chr12 93882321 93882769 -50399720 + L1MA7 LINE L1 5846 6289 -2 1454 209 3 13 chr12 93882898 93883205 -50399284 - AluJo SINE Alu -8 304 1 366 354 56 0 chr12 93883228 93883372 -50399117 - MIR SINE MIR -48 214 63 624 245 153 51 chr12 93884640 93884934 -50397555 + MER5C DNA MER1_type 1 324 0 320 254 87 72 chr12 93884969 93885107 -50397382 + MIR SINE MIR 53 192 -70 * 439 239 22 0 chr12 93885091 93885183 -50397306 + MER5A DNA MER1_type 16 109 -80 328 274 90 94 chr12 93887297 93887509 -50394980 + MIR SINE MIR 46 256 -6 260 317 50 33 chr12 93887634 93887797 -50394692 - MIR SINE MIR -57 205 37 635 169 25 0 chr12 93888151 93888269 -50394220 + L1MA7 LINE L1 6165 6285 -6 182 303 91 0 chr12 93888961 93889027 -50393462 + L2 LINE L2 3201 3272 0 223 443 0 16 chr12 93890129 93890251 -50392238 - L2 LINE L2 -212 3060 2941 497 251 89 31 chr12 93890345 93890536 -50391953 - LTR33A LTR ERVL -3 520 319 5955 182 48 58 chr12 93890626 93892035 -50390454 + L1MC3 LINE L1 6367 7760 -25 275 206 0 0 chr12 93892050 93892118 -50390371 + L1MB4 LINE L1 6112 6179 -1 464 195 0 0 chr12 93892133 93892220 -50390269 + L1MC1 LINE L1 6214 6300 -33 357 315 144 11 chr12 93892336 93892517 -50389972 - LTR50 LTR ERVL -590 205 1 258 286 143 0 chr12 93892531 93892608 -50389881 - MLT1K LTR MaLR -128 460 373 224 348 84 51 chr12 93893245 93893423 -50389066 - MER5A DNA MER1_type 0 189 6 210 304 80 27 chr12 93893427 93893539 -50388950 - L2 LINE L2 -846 2468 2351 408 283 0 0 chr12 93893546 93893638 -50388851 - MER81 DNA DNA -22 92 1 230 392 47 27 chr12 93893675 93893823 -50388666 - L2 LINE L2 -981 2333 2183 210 237 0 0 chr12 93893859 93893897 -50388592 + polypurine Low_complexity Low_complexity 2 39 0 436 342 71 47 chr12 93894243 93894565 -50387924 + MER102b DNA MER1_type 9 338 -3 224 330 40 0 chr12 93894695 93894795 -50387694 - L2 LINE L2 -1691 1623 1520 1920 215 13 58 chr12 93896686 93897208 -50385281 - MLT1D LTR MaLR -6 499 1 197 393 126 7 chr12 93897326 93897461 -50385028 + MIR SINE MIR 2 147 -61 230 319 104 18 chr12 93897663 93897826 -50384663 + MIR SINE MIR 84 260 -2 850 273 17 62 chr12 93898047 93898402 -50384087 - L1MC4a LINE L1 -868 6940 6602 455 355 61 57 chr12 93898638 93898825 -50383664 - HAL1b LINE L1 -674 674 489 8768 83 9 0 chr12 93898825 93900804 -50381685 + L1PA7 LINE L1 4165 6153 -1 455 355 61 57 chr12 93900804 93901284 -50381205 - HAL1b LINE L1 -859 489 4 269 51 26 0 chr12 93901572 93901611 -50380878 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 2085 193 8 10 chr12 93902325 93902718 -50379771 - MSTD LTR MaLR -4 392 1 430 276 22 22 chr12 93905185 93905319 -50377170 + MER103 DNA DNA 24 157 -9 1952 122 83 11 chr12 93905618 93905979 -50376510 + L1MA8 LINE L1 5901 6287 -4 3839 70 2 2 chr12 93906050 93906553 -50375936 + L1PA12 LINE L1 5659 6161 -7 468 339 73 5 chr12 93907259 93907451 -50375038 - MIR SINE MIR -44 218 14 3108 274 43 4 chr12 93909485 93910290 -50372199 - ERVL LTR ERVL -2756 3008 2172 311 308 48 35 chr12 93910281 93910508 -50371981 - ERVL LTR ERVL -4052 1602 1373 * 602 346 91 4 chr12 93910512 93910766 -50371723 - MLT2E LTR ERVL -103 525 250 257 306 12 12 chr12 93910960 93911045 -50371444 - MIR SINE MIR -17 245 161 6251 37 1 1 chr12 93912095 93912846 -50369643 - L1PA4 LINE L1 -4 6151 5401 701 294 57 37 chr12 93913080 93913481 -50369008 + L1M4 LINE L1 2928 3336 -2810 26 0 0 0 chr12 93913558 93913584 -50368905 + AT_rich Low_complexity Low_complexity 1 26 0 237 279 31 16 chr12 93913785 93913914 -50368575 + L1M4 LINE L1 4561 4691 -1455 23 54 0 0 chr12 93914216 93914253 -50368236 + AT_rich Low_complexity Low_complexity 1 37 0 259 337 27 22 chr12 93914944 93915353 -50367136 + L1ME LINE L1 4195 4605 -1541 362 275 49 35 chr12 93915509 93915651 -50366838 - MER5A DNA MER1_type -3 186 43 21 0 0 0 chr12 93915989 93916010 -50366479 + AT_rich Low_complexity Low_complexity 1 21 0 260 153 68 34 chr12 93916885 93916944 -50365545 + FLAM_A SINE Alu 70 124 -9 319 281 137 38 chr12 93916981 93917245 -50365244 + L1ME LINE L1 5374 5663 -458 259 380 16 8 chr12 93917440 93917561 -50364928 + L2 LINE L2 3184 3305 -8 3645 159 38 13 chr12 93917751 93918460 -50364029 + L1MA9 LINE L1 5581 6307 -5 2365 133 126 14 chr12 93918692 93919063 -50363426 - MER31A LTR ERV1 0 485 56 3589 141 67 38 chr12 93919063 93919770 -50362719 + LTR8A LTR ERV1 1 727 0 2365 133 126 14 chr12 93919770 93919834 -50362655 - MER31A LTR ERV1 -429 56 1 2178 106 50 34 chr12 93919871 93920229 -50362260 + THE1B LTR MaLR 1 364 0 241 233 67 0 chr12 93920798 93920888 -50361601 + L1ME4a LINE L1 5993 6088 -33 21 36 0 0 chr12 93921619 93921647 -50360842 + AT_rich Low_complexity Low_complexity 1 28 0 315 245 0 0 chr12 93921775 93921869 -50360620 + (TATG)n Simple_repeat Simple_repeat 3 96 0 206 375 50 0 chr12 93922797 93922877 -50359612 + L2 LINE L2 3143 3226 -46 24 0 0 0 chr12 93923548 93923572 -50358917 + AT_rich Low_complexity Low_complexity 1 24 0 241 293 17 35 chr12 93924111 93924227 -50358262 - MIR SINE MIR 0 262 149 825 309 119 19 chr12 93925152 93925688 -50356801 + L2 LINE L2 2712 3313 0 1044 311 87 32 chr12 93925773 93926336 -50356153 - L3 LINE CR1 -341 1236 643 23 33 0 0 chr12 93926670 93926700 -50355789 + AT_rich Low_complexity Low_complexity 1 30 0 441 334 97 16 chr12 93927269 93927580 -50354909 - MLT1I LTR MaLR -20 389 54 883 314 78 58 chr12 93927738 93927891 -50354598 + L1M4 LINE L1 3794 3942 -2204 1970 148 3 0 chr12 93927891 93928189 -50354300 - AluJb SINE Alu -11 301 3 883 314 78 58 chr12 93928189 93928765 -50353724 + L1M4 LINE L1 3942 4538 -1608 1282 96 15 0 chr12 93928955 93929152 -50353337 - L1PA13 LINE L1 -5 6158 5959 4760 206 20 12 chr12 93929269 93930465 -50352024 + L1 LINE L1 4125 5329 -817 2854 136 2 0 chr12 93930463 93930933 -50351556 + L1PA16 LINE L1 5357 5827 -339 * 2168 88 21 19 chr12 93930936 93931332 -50351157 - LTR7 LTR ERV1 -2 448 1 2289 98 45 13 chr12 93931332 93931710 -50350779 - HERVH LTR ERV1 0 7713 7324 1383 129 0 5 chr12 93931710 93931934 -50350555 - HERVH LTR ERV1 -1894 5819 5597 * 2738 125 28 6 chr12 93931931 93932531 -50349958 - HERVH LTR ERV1 -2564 5149 4488 5354 101 17 4 chr12 93932533 93933376 -50349113 - HERVH LTR ERV1 -3720 3993 3140 * 12407 136 17 37 chr12 93933355 93936164 -50346325 - HERVH LTR ERV1 -4718 2995 1 2513 79 97 5 chr12 93936174 93936578 -50345911 - LTR7 LTR ERV1 -9 441 1 693 137 15 30 chr12 93936578 93936709 -50345780 + L1PA16 LINE L1 5825 5953 -213 526 128 81 142 chr12 93936714 93936812 -50345677 + FLAM_C SINE Alu 5 107 -205 342 0 0 0 chr12 93936812 93936850 -50345639 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7669 20 1 1 chr12 93936850 93938410 -50344079 - L1PA2 LINE L1 -13 6142 4583 526 128 81 142 chr12 93938410 93938447 -50344042 + FLAM_C SINE Alu 106 134 -178 1263 129 9 18 chr12 93938447 93938671 -50343818 + L1PA16 LINE L1 5945 6166 0 2541 111 17 6 chr12 93939035 93939394 -50343095 + THE1B LTR MaLR 1 363 -1 22 0 0 0 chr12 93939925 93939947 -50342542 + AT_rich Low_complexity Low_complexity 1 22 0 824 200 28 28 chr12 93939963 93940178 -50342311 + L1MD3 LINE L1 7730 7944 -51 2020 113 23 23 chr12 93940791 93941091 -50341398 + AluSg SINE Alu 1 300 -10 1474 209 65 59 chr12 93942429 93942888 -50339601 - MLT1C LTR MaLR -1 466 5 262 213 83 93 chr12 93943216 93943324 -50339165 - Charlie8 DNA MER1_type -2154 263 157 1245 177 121 26 chr12 93943354 93943619 -50338870 + AluJo SINE Alu 1 290 -22 24 0 0 0 chr12 93943679 93943703 -50338786 + AT_rich Low_complexity Low_complexity 1 24 0 750 270 40 9 chr12 93943900 93944122 -50338367 + L2 LINE L2 1378 1606 -1708 267 31 0 0 chr12 93944135 93944167 -50338322 + (TC)n Simple_repeat Simple_repeat 1 32 0 327 272 212 18 chr12 93944204 93944421 -50338068 + L2 LINE L2 1850 2108 -1206 989 246 31 23 chr12 93944625 93944975 -50337514 + LTR52 LTR ERVL 69 421 0 1980 108 24 3 chr12 93945343 93945630 -50336859 - AluY SINE Alu -18 293 1 876 57 8 0 chr12 93946072 93946195 -50336294 + L1P3 LINE L1 5385 5508 -646 230 232 22 39 chr12 93947240 93947421 -50335068 + (CACAC)n Simple_repeat Simple_repeat 1 178 0 404 313 70 20 chr12 93947669 93947870 -50334619 + MIR SINE MIR 49 259 -3 363 224 80 32 chr12 93948580 93948705 -50333784 - MIR SINE MIR -15 247 117 298 182 70 0 chr12 93948928 93949071 -50333418 + (CA)n Simple_repeat Simple_repeat 2 154 0 309 209 55 6 chr12 93949101 93949264 -50333225 + (CACAA)n Simple_repeat Simple_repeat 2 172 0 1363 65 5 222 chr12 93949379 93949749 -50332740 - L1P LINE L1 -743 5403 5114 33 0 0 0 chr12 93950960 93950993 -50331496 + AT_rich Low_complexity Low_complexity 1 33 0 5698 119 61 17 chr12 93952325 93953351 -50329138 + L1P LINE L1 3374 4445 -1701 309 237 0 0 chr12 93953933 93953992 -50328497 - Tigger3(Golem) DNA MER2_type -1 3028 2970 581 285 35 0 chr12 93955164 93955308 -50327181 - L2 LINE L2 0 3313 3165 6286 57 7 81 chr12 93956542 93958197 -50324292 + L1PA7 LINE L1 4582 6147 -7 620 211 36 18 chr12 93958205 93958371 -50324118 + MLT1C LTR MaLR 158 326 -141 670 303 106 26 chr12 93958516 93958978 -50323511 - L2 LINE L2 -1 3312 2814 34 24 0 0 chr12 93959006 93959047 -50323442 + AT_rich Low_complexity Low_complexity 1 41 0 520 212 256 0 chr12 93959047 93959184 -50323305 - L2 LINE L2 -488 2826 2655 317 151 5 88 chr12 93959595 93959787 -50322702 + (CAA)n Simple_repeat Simple_repeat 3 178 0 233 204 72 0 chr12 93959793 93959960 -50322529 + (CA)n Simple_repeat Simple_repeat 2 180 0 2151 57 1 14 chr12 93960572 93961361 -50321128 + L1PA5 LINE L1 5221 6151 -3 651 193 22 7 chr12 93961378 93961513 -50320976 - MLT1A1 LTR MaLR -224 141 5 254 222 137 26 chr12 93961568 93961685 -50320804 + L1ME1 LINE L1 5808 5937 -229 310 226 32 21 chr12 93962038 93962131 -50320358 + MLT1C LTR MaLR 297 390 0 1578 175 45 4 chr12 93962172 93962441 -50320048 + AluJb SINE Alu 12 291 -21 2645 91 6 0 chr12 93963168 93963521 -50318968 - THE1A LTR MaLR 0 355 1 344 321 48 21 chr12 93963532 93963719 -50318770 + MIR SINE MIR 70 261 -1 2322 77 3 7 chr12 93965219 93965516 -50316973 - AluSg SINE Alu -14 296 1 368 259 184 25 chr12 93966068 93966226 -50316263 - MIR SINE MIR -31 231 49 213 193 96 48 chr12 93967086 93967169 -50315320 - MIR SINE MIR -106 102 16 415 333 48 0 chr12 93967630 93967795 -50314694 - MIR3 SINE MIR -6 202 30 222 37 0 0 chr12 93968564 93968591 -50313898 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 393 279 86 50 chr12 93968906 93969046 -50313443 - MIR SINE MIR -105 157 13 22 0 0 0 chr12 93969218 93969240 -50313249 + AT_rich Low_complexity Low_complexity 1 22 0 591 211 16 0 chr12 93969463 93969586 -50312903 - FLAM_A SINE Alu -1 141 17 16084 134 13 19 chr12 93969920 93972861 -50309628 + L1PA4 LINE L1 1368 5077 -2507 10298 93 12 14 chr12 93972861 93974312 -50308177 + L1PA4 LINE L1 5318 6770 -823 2292 73 17 10 chr12 93974312 93974614 -50307875 + AluY SINE Alu 1 304 -7 10298 93 12 14 chr12 93974614 93975436 -50307053 + L1PA4 LINE L1 6770 7592 -1 2315 87 0 40 chr12 93975595 93975916 -50306573 - AluSc SINE Alu -1 308 1 292 346 28 0 chr12 93977989 93978096 -50304393 + L2 LINE L2 3157 3266 -6 257 357 62 73 chr12 93978477 93978749 -50303740 + L2 LINE L2 3004 3272 0 3424 102 63 2 chr12 93979583 93980141 -50302348 - L1PB2 LINE L1 -219 5932 5341 232 233 0 14 chr12 93980154 93980227 -50302262 + LTR38B LTR ERV1 42 113 -497 1475 189 77 66 chr12 93980268 93980723 -50301766 + LTR38B LTR ERV1 132 591 -19 1873 170 36 85 chr12 93981080 93981528 -50300961 + MSTB LTR MaLR 1 426 0 8592 182 25 8 chr12 93981528 93983152 -50299337 + MSTB-int LTR MaLR 1 1651 0 2102 175 31 10 chr12 93983154 93983570 -50298919 + MSTB LTR MaLR 3 426 0 366 288 16 16 chr12 93983763 93983888 -50298601 - MLT1K LTR MaLR -263 325 201 2079 104 7 23 chr12 93984077 93984376 -50298113 + AluSp SINE Alu 1 294 -19 520 330 16 16 chr12 93984395 93984583 -50297906 + MIR SINE MIR 45 232 -30 262 285 154 36 chr12 93984910 93985131 -50297358 - L2 LINE L2 -353 2961 2715 244 187 33 77 chr12 93986160 93986251 -50296238 + MER113 DNA MER1_type? 4 90 -431 568 139 10 0 chr12 93986299 93986400 -50296089 + L1MA9 LINE L1 6004 6105 -207 1137 215 18 4 chr12 93986401 93986629 -50295860 - MER8 DNA MER2_type 0 239 9 748 166 43 0 chr12 93986629 93986792 -50295697 + L1MA7 LINE L1 6110 6279 -12 2118 101 30 7 chr12 93986854 93986977 -50295512 + AluSx SINE Alu 1 120 -192 180 0 0 0 chr12 93986977 93986997 -50295492 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2118 101 30 7 chr12 93986997 93987170 -50295319 + AluSx SINE Alu 120 304 -8 736 116 45 0 chr12 93987345 93987457 -50295032 - U1 snRNA snRNA -1 164 48 659 228 99 43 chr12 93987708 93987940 -50294549 + MIR SINE MIR 18 262 0 26 30 0 0 chr12 93991233 93991266 -50291223 + AT_rich Low_complexity Low_complexity 1 33 0 269 301 91 60 chr12 93992467 93992666 -50289823 + MIR SINE MIR 47 251 -11 222 37 0 0 chr12 93993065 93993092 -50289397 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 415 333 48 0 chr12 93993861 93994026 -50288463 + MIR3 SINE MIR 30 202 -6 276 241 60 12 chr12 93994485 93994568 -50287921 + MIR SINE MIR 16 102 -106 216 97 0 0 chr12 93994825 93994856 -50287633 + (T)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr12 93995055 93995076 -50287413 + AT_rich Low_complexity Low_complexity 1 21 0 314 75 60 0 chr12 93996523 93996590 -50285899 + (TA)n Simple_repeat Simple_repeat 2 72 0 22 0 0 0 chr12 93996800 93996822 -50285667 + AT_rich Low_complexity Low_complexity 1 22 0 208 288 27 0 chr12 93996834 93996907 -50285582 - MIR SINE MIR 0 262 188 241 189 0 57 chr12 93997178 93997231 -50285258 - MIR SINE MIR -97 165 116 276 298 133 7 chr12 93997749 93997900 -50284589 + MIR SINE MIR 63 232 -30 313 329 14 89 chr12 93998259 93998539 -50283950 - MIR SINE MIR -2 260 2 182 62 31 0 chr12 93998591 93998623 -50283866 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr12 93999239 93999262 -50283227 + AT_rich Low_complexity Low_complexity 1 23 0 403 297 21 7 chr12 93999479 93999624 -50282865 + MIR SINE MIR 106 252 -10 281 361 23 38 chr12 94000121 94000254 -50282235 + MIR SINE MIR 20 150 -58 234 328 0 0 chr12 94000267 94000334 -50282155 + T-rich Low_complexity Low_complexity 3 69 0 242 363 70 41 chr12 94000512 94000683 -50281806 + MIR SINE MIR 23 198 -64 848 164 0 0 chr12 94000685 94000807 -50281682 + FLAM_C SINE Alu 3 124 -19 410 0 0 20 chr12 94000811 94000862 -50281627 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 519 251 70 29 chr12 94001254 94001425 -50281064 + MIR SINE MIR 79 256 -6 320 290 174 13 chr12 94002319 94002474 -50280015 + L2 LINE L2 2677 2856 -458 27 0 0 0 chr12 94003048 94003075 -50279414 + AT_rich Low_complexity Low_complexity 1 27 0 361 253 37 49 chr12 94003247 94003409 -50279080 - MIR SINE MIR -24 238 79 2241 93 0 0 chr12 94003493 94003798 -50278691 - AluSc SINE Alu 0 305 1 2338 95 0 3 chr12 94005159 94005464 -50277025 - AluSq SINE Alu -9 304 1 252 299 60 45 chr12 94006598 94006732 -50275757 - L2 LINE L2 0 3272 3137 752 309 115 37 chr12 94006961 94007169 -50275320 - L2 LINE L2 0 3313 3123 189 0 0 0 chr12 94007169 94007190 -50275299 + (ATGTG)n Simple_repeat Simple_repeat 4 24 0 752 309 115 37 chr12 94007190 94007791 -50274698 - L2 LINE L2 -190 3123 2433 727 272 55 21 chr12 94007855 94008090 -50274399 - MIR SINE MIR -4 258 16 2508 77 0 0 chr12 94008145 94008455 -50274034 - AluSg SINE Alu 0 310 1 368 259 184 25 chr12 94008958 94009116 -50273373 - MIR SINE MIR -31 231 49 21 0 0 0 chr12 94009408 94009429 -50273060 + AT_rich Low_complexity Low_complexity 1 21 0 1099 81 0 0 chr12 94010065 94010214 -50272275 - L1PB1 LINE L1 -1 6150 6002 308 309 66 37 chr12 94010347 94010483 -50272006 - MER5A DNA MER1_type -7 182 43 216 0 0 0 chr12 94010873 94010897 -50271592 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 636 329 68 34 chr12 94012456 94012866 -50269623 + L2 LINE L2 2357 2780 -534 427 287 94 35 chr12 94013686 94013888 -50268601 + MIR SINE MIR 46 259 -3 264 339 0 74 chr12 94016193 94016314 -50266175 - MIR SINE MIR -70 192 81 1669 194 77 63 chr12 94016602 94016653 -50265836 - MLT1D LTR MaLR 0 505 456 2066 118 6 48 chr12 94016653 94016966 -50265523 + AluSx SINE Alu 1 300 -12 1669 194 77 63 chr12 94016966 94017408 -50265081 - MLT1D LTR MaLR -49 456 5 203 245 0 0 chr12 94018501 94018550 -50263939 + MIR SINE MIR 98 146 -62 3802 274 92 39 chr12 94018655 94020213 -50262276 + L2 LINE L2 1466 3094 -219 2242 88 3 3 chr12 94020675 94020969 -50261520 - AluSg SINE Alu -16 294 1 653 228 136 44 chr12 94021105 94021311 -50261178 + L2 LINE L2 3087 3311 -2 203 356 0 0 chr12 94022343 94022402 -50260087 + L2 LINE L2 3247 3305 -8 298 333 56 49 chr12 94022437 94022599 -50259890 - L2 LINE L2 -4 3268 3106 552 284 74 21 chr12 94024751 94024941 -50257548 + MIR SINE MIR 47 246 -16 264 300 20 107 chr12 94025531 94025583 -50256906 - MER5A DNA MER1_type -13 176 121 3113 87 2 9 chr12 94025583 94026031 -50256458 + L1PA6 LINE L1 5710 6154 0 264 300 20 107 chr12 94026031 94026128 -50256361 - MER5A DNA MER1_type -68 121 40 183 360 79 0 chr12 94026303 94026392 -50256097 + MER5A DNA MER1_type 26 121 -68 246 62 0 0 chr12 94026481 94026513 -50255976 + (TG)n Simple_repeat Simple_repeat 2 33 0 523 276 40 20 chr12 94026637 94026789 -50255700 + MIR3 SINE MIR 10 164 -44 800 167 0 8 chr12 94028493 94028625 -50253864 - FLAM_C SINE Alu -12 131 1 1545 186 17 14 chr12 94029213 94029503 -50252986 - AluJo SINE Alu -21 291 1 257 306 51 51 chr12 94030681 94030779 -50251710 - MIR3 SINE MIR -20 188 91 601 296 25 10 chr12 94031050 94031246 -50251243 - MIR SINE MIR -48 214 16 454 158 0 37 chr12 94031403 94031485 -50251004 - Tigger4(Zombi) DNA MER2_type -2 2729 2651 2340 180 24 19 chr12 94031487 94031507 -50250982 - L1P4 LINE L1 -676 5490 5472 3812 134 59 6 chr12 94031507 94032155 -50250334 - L1PA16 LINE L1 -9 6157 5476 4884 52 5 0 chr12 94032155 94032764 -50249725 - L1PA7 LINE L1 -3 6151 5536 2340 180 24 19 chr12 94032764 94033408 -50249081 - L1P4 LINE L1 -693 5473 4826 363 290 36 22 chr12 94033612 94033750 -50248739 + MIR SINE MIR 46 185 -77 25 31 0 0 chr12 94034064 94034096 -50248393 + AT_rich Low_complexity Low_complexity 1 32 0 1845 149 31 7 chr12 94034480 94034768 -50247721 + AluSx SINE Alu 5 299 -13 567 288 71 20 chr12 94034924 94035122 -50247367 + MIR SINE MIR 47 254 -8 230 281 206 14 chr12 94035720 94035866 -50246623 - MIR SINE MIR -3 259 86 546 284 74 21 chr12 94036155 94036345 -50246144 + MIR SINE MIR 47 246 -16 229 287 210 7 chr12 94036968 94037111 -50245378 - MIR SINE MIR -3 259 88 497 219 258 13 chr12 94037362 94037513 -50244976 - MER5A DNA MER1_type -1 188 1 562 144 6 198 chr12 94038171 94038338 -50244151 + MER2 DNA MER2_type 2 136 -209 23 54 0 0 chr12 94038420 94038457 -50244032 + AT_rich Low_complexity Low_complexity 1 37 0 255 186 0 0 chr12 94038539 94038582 -50243907 + MER2 DNA MER2_type 278 320 -25 358 306 23 42 chr12 94039934 94040124 -50242365 - MIR SINE MIR -50 212 30 189 0 0 0 chr12 94040812 94040833 -50241656 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 27 0 0 0 chr12 94041218 94041245 -50241244 + AT_rich Low_complexity Low_complexity 1 27 0 480 268 52 5 chr12 94041264 94041478 -50241011 - L1MA4 LINE L1 -25 6280 6054 841 175 18 107 chr12 94041521 94041801 -50240688 - L1MC4 LINE L1 0 8042 7788 221 0 0 33 chr12 94041868 94041898 -50240591 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 980 192 156 5 chr12 94041963 94042187 -50240302 + MLT1D LTR MaLR 13 270 -235 189 0 0 0 chr12 94042938 94042959 -50239530 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 27 0 0 0 chr12 94043344 94043371 -50239118 + AT_rich Low_complexity Low_complexity 1 27 0 1092 170 39 0 chr12 94043375 94043604 -50238885 - L1MA4 LINE L1 -9 6291 6054 841 175 18 107 chr12 94043647 94043927 -50238562 - L1MC4 LINE L1 0 8042 7788 221 0 0 33 chr12 94043994 94044024 -50238465 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2284 200 76 7 chr12 94044089 94044550 -50237939 + MLT1D LTR MaLR 13 505 0 887 251 117 26 chr12 94044550 94044968 -50237521 - L1MC4 LINE L1 -408 7634 7179 183 288 50 79 chr12 94045211 94045350 -50237139 + L2 LINE L2 2681 2815 -499 2470 86 0 0 chr12 94045350 94045654 -50236835 + AluY SINE Alu 1 304 -7 338 336 82 25 chr12 94045917 94046039 -50236450 + L2 LINE L2 3143 3271 -1 1281 204 45 26 chr12 94047855 94048207 -50234282 - Charlie5 DNA MER1_type 0 2616 2258 322 281 9 18 chr12 94048242 94048356 -50234133 - Charlie5 DNA MER1_type -2495 117 5 492 295 29 14 chr12 94048368 94048507 -50233982 - MIR3 SINE MIR -64 144 4 373 337 70 17 chr12 94049134 94049306 -50233183 + MIR3 SINE MIR 25 205 -3 2146 121 7 0 chr12 94049792 94050089 -50232400 + AluSq SINE Alu 5 303 -10 33 25 0 0 chr12 94050410 94050450 -50232039 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr12 94050958 94050994 -50231495 + AT_rich Low_complexity Low_complexity 1 36 0 1492 209 0 14 chr12 94052592 94052884 -50229605 + AluJo SINE Alu 1 288 -24 225 0 0 0 chr12 94052891 94052916 -50229573 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1377 129 10 5 chr12 94053354 94053556 -50228933 + AluSq SINE Alu 1 203 -110 394 316 105 0 chr12 94054319 94054452 -50228037 + MIR SINE MIR 36 182 -80 22 0 0 0 chr12 94054487 94054509 -50227980 + AT_rich Low_complexity Low_complexity 1 22 0 230 173 200 13 chr12 94055075 94055150 -50227339 + MIR SINE MIR 171 259 -3 605 277 148 23 chr12 94055190 94055630 -50226859 - L1ME3A LINE L1 -209 6030 5539 23 0 0 0 chr12 94055778 94055801 -50226688 + AT_rich Low_complexity Low_complexity 1 23 0 800 257 82 4 chr12 94057803 94058083 -50224406 + MER46C DNA MER2_type 37 338 0 2278 271 93 37 chr12 94058119 94060670 -50221819 - L1MEc LINE L1 -2914 3301 660 30 0 0 0 chr12 94060836 94060866 -50221623 + AT_rich Low_complexity Low_complexity 1 30 0 315 297 54 9 chr12 94062114 94062225 -50220264 + MIR SINE MIR 128 243 -19 252 0 0 0 chr12 94064005 94064033 -50218456 + (CA)n Simple_repeat Simple_repeat 2 29 0 2140 129 0 0 chr12 94064390 94064685 -50217804 - AluSx SINE Alu -17 295 1 2365 52 0 11 chr12 94067457 94068248 -50214241 - L1PA5 LINE L1 0 6154 5221 1815 189 0 0 chr12 94070394 94070695 -50211794 + AluJb SINE Alu 1 301 -11 210 71 0 119 chr12 94072562 94072604 -50209885 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 1966 129 4 0 chr12 94072606 94072878 -50209611 - AluSx SINE Alu -36 276 4 660 226 45 0 chr12 94073937 94074092 -50208397 - L2 LINE L2 -15 3298 3137 188 261 0 0 chr12 94075911 94075957 -50206532 + MIR3 SINE MIR 155 200 -8 196 232 159 43 chr12 94077308 94077377 -50205112 + MIR SINE MIR 62 138 -70 22 35 0 0 chr12 94078881 94078910 -50203579 + AT_rich Low_complexity Low_complexity 1 29 0 360 330 124 11 chr12 94079656 94079755 -50202734 + L2 LINE L2 2607 2693 -621 447 19 0 0 chr12 94079755 94079807 -50202682 + (TG)n Simple_repeat Simple_repeat 2 53 0 360 330 124 11 chr12 94079807 94079892 -50202597 + L2 LINE L2 2693 2812 -502 180 0 0 0 chr12 94079905 94079925 -50202564 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 373 236 50 31 chr12 94080090 94080251 -50202238 - L1MC5 LINE L1 -35 7926 7763 3033 308 65 14 chr12 94080698 94081824 -50200665 + L2 LINE L2 264 1446 -1868 471 257 9 0 chr12 94081844 94081949 -50200540 + MER69 DNA AcHobo 27 132 -2394 1535 232 84 42 chr12 94081960 94082434 -50200055 + MER69 DNA AcHobo 347 840 -1686 4467 169 17 6 chr12 94082463 94083362 -50199127 - L1MC3 LINE L1 -743 5403 5187 22 80 0 0 chr12 94083615 94083665 -50198824 + AT_rich Low_complexity Low_complexity 1 50 0 2875 215 50 47 chr12 94083776 94084826 -50197663 + MER69 DNA AcHobo 1468 2521 -5 21409 156 30 26 chr12 94084831 94091358 -50191131 - L1ME LINE L1 -426 7159 530 2493 68 7 0 chr12 94091358 94091667 -50190822 + AluY SINE Alu 1 311 0 21409 156 30 26 chr12 94091667 94092181 -50190308 - L1ME LINE L1 -7055 530 20 26 64 0 0 chr12 94092498 94092545 -50189944 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr12 94092897 94092921 -50189568 + AT_rich Low_complexity Low_complexity 1 24 0 6587 57 5 4 chr12 94093091 94093930 -50188559 - L1PA7 LINE L1 -6 6148 5309 9728 93 16 0 chr12 94094041 94095421 -50187068 - L1PA7 LINE L1 -1111 5035 3634 484 279 136 61 chr12 94095436 94095554 -50186935 + L2 LINE L2 2744 2852 -461 1927 135 29 35 chr12 94095554 94095931 -50186558 - THE1C LTR MaLR 0 375 1 484 279 136 61 chr12 94095931 94096184 -50186305 + L2 LINE L2 2852 3148 -165 2185 244 36 26 chr12 94096184 94096665 -50185824 - MER119 DNA MER1_type 0 583 94 1587 205 22 38 chr12 94096665 94097036 -50185453 - MLT1A1 LTR MaLR 0 365 1 2185 244 36 26 chr12 94097036 94097131 -50185358 - MER119 DNA MER1_type -489 94 1 336 223 43 125 chr12 94097132 94097316 -50185173 + L2 LINE L2 3142 3310 -3 382 350 68 56 chr12 94097317 94097681 -50184808 - L1M4 LINE L1 -768 5378 5003 201 74 0 0 chr12 94097681 94097708 -50184781 + (TTA)n Simple_repeat Simple_repeat 2 28 0 382 350 68 56 chr12 94097708 94097912 -50184577 - L1M4 LINE L1 -1143 5003 4803 516 212 256 0 chr12 94100326 94100463 -50182026 + L2 LINE L2 2655 2826 -488 34 24 0 0 chr12 94100463 94100504 -50181985 + AT_rich Low_complexity Low_complexity 1 41 0 863 298 94 24 chr12 94100532 94100998 -50181491 + L2 LINE L2 2814 3312 -1 291 71 0 0 chr12 94101051 94101093 -50181396 + (TG)n Simple_repeat Simple_repeat 2 43 0 853 156 0 22 chr12 94101113 94101248 -50181241 + MER2 DNA MER2_type 1 132 -213 180 0 0 0 chr12 94102824 94102844 -50179645 + (A)n Simple_repeat Simple_repeat 1 20 0 201 74 0 0 chr12 94103471 94103498 -50178991 + (CCCCCT)n Simple_repeat Simple_repeat 3 29 0 1103 150 52 9 chr12 94103623 94103836 -50178653 + L1PB2 LINE L1 5928 6149 -2 26 0 0 0 chr12 94104140 94104166 -50178323 + AT_rich Low_complexity Low_complexity 1 26 0 192 242 0 45 chr12 94105014 94105091 -50177398 - MIR SINE MIR -123 139 38 2296 88 0 38 chr12 94106476 94106796 -50175693 + AluSc SINE Alu 1 308 -1 4570 21 4 0 chr12 94106955 94107484 -50175005 - L1PA4 LINE L1 -1 6154 5624 2640 93 16 8 chr12 94107517 94107884 -50174605 + THE1C LTR MaLR 1 370 -5 532 253 54 36 chr12 94108747 94108913 -50173576 - MIR SINE MIR -93 169 1 198 0 0 0 chr12 94109769 94109791 -50172698 + (A)n Simple_repeat Simple_repeat 1 22 0 276 194 90 0 chr12 94110171 94110238 -50172251 + MIR SINE MIR 81 153 -109 229 292 31 85 chr12 94110317 94110447 -50172042 + MIR SINE MIR 132 254 -8 209 370 31 39 chr12 94110630 94110757 -50171732 - MIR SINE MIR -63 145 20 243 79 0 0 chr12 94110767 94110805 -50171684 + (TTTTTA)n Simple_repeat Simple_repeat 3 40 0 210 217 72 14 chr12 94111983 94112052 -50170437 + MIR SINE MIR 81 153 -109 229 292 31 85 chr12 94112131 94112261 -50170228 + MIR SINE MIR 132 254 -8 209 370 31 39 chr12 94112444 94112571 -50169918 - MIR SINE MIR -63 145 20 243 79 0 0 chr12 94112581 94112619 -50169870 + (TTTTTA)n Simple_repeat Simple_repeat 3 40 0 37214 84 16 34 chr12 94113338 94115648 -50166841 + L1PA7 LINE L1 8 2358 -3796 248 0 31 0 chr12 94115648 94115680 -50166809 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 37214 84 16 34 chr12 94115680 94119619 -50162870 + L1PA7 LINE L1 2358 6143 -11 1346 225 25 22 chr12 94119621 94119937 -50162552 + MLT1C LTR MaLR 151 467 0 2145 219 71 12 chr12 94119981 94120543 -50161946 - L1MC4 LINE L1 -204 7838 7244 1022 217 157 7 chr12 94120544 94120843 -50161646 - L1MC4 LINE L1 -978 7064 6721 607 225 6 77 chr12 94121026 94121208 -50161281 - L1MC4 LINE L1 -1416 6626 6458 185 108 27 0 chr12 94121916 94121953 -50160536 + GA-rich Low_complexity Low_complexity 4 41 0 817 134 134 34 chr12 94122212 94122361 -50160128 - FRAM SINE Alu -18 158 1 264 30 0 0 chr12 94122807 94122840 -50159649 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 169 32 16 chr12 94123337 94123461 -50159028 + (TA)n Simple_repeat Simple_repeat 1 126 0 248 350 28 21 chr12 94123610 94123753 -50158736 + L2 LINE L2 1280 1423 -1891 1539 234 20 30 chr12 94123766 94124167 -50158322 + MLT1E2 LTR MaLR 4 400 -226 1273 99 5 16 chr12 94124282 94124473 -50158016 + THE1A LTR MaLR 167 355 0 1685 170 35 3 chr12 94125201 94125483 -50157006 - AluJb SINE Alu -21 291 1 1762 157 47 37 chr12 94125516 94125899 -50156590 - MLT1B LTR MaLR 0 390 4 221 267 0 17 chr12 94126059 94126119 -50156370 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 878 271 103 62 chr12 94126436 94126988 -50155501 + MLT1G LTR MaLR 1 538 -52 1720 230 21 82 chr12 94126988 94127728 -50154761 - L1M4 LINE L1 -2581 3565 2872 410 199 39 103 chr12 94127729 94127885 -50154604 - L1ME LINE L1 -620 5546 5401 450 129 0 0 chr12 94127885 94127955 -50154534 + MLT2C1 LTR ERVL 1 70 -327 218 358 86 26 chr12 94128000 94128232 -50154257 + L2 LINE L2 3067 3312 -1 672 278 91 21 chr12 94128665 94128996 -50153493 - L1ME1 LINE L1 -5 6161 5808 664 185 22 7 chr12 94129051 94129186 -50153303 + MLT1A1 LTR MaLR 5 141 -224 7134 53 0 0 chr12 94129200 94130152 -50152337 - L1PA5 LINE L1 0 6154 5204 1089 98 0 0 chr12 94130152 94130316 -50152173 - L1P LINE L1 -865 5281 5118 543 276 66 39 chr12 94130390 94130571 -50151918 - MIR SINE MIR -64 198 13 22 0 0 0 chr12 94130743 94130765 -50151724 + AT_rich Low_complexity Low_complexity 1 22 0 604 218 8 0 chr12 94130988 94131112 -50151377 - FLAM_A SINE Alu -1 141 17 16245 131 13 18 chr12 94131447 94134384 -50148105 + L1PA7 LINE L1 1368 5077 -2507 10358 93 8 15 chr12 94134384 94135835 -50146654 + L1PA7 LINE L1 5318 6760 -832 2444 69 7 10 chr12 94135835 94136139 -50146350 + AluY SINE Alu 1 303 -8 10358 93 8 15 chr12 94136139 94136965 -50145524 + L1PA7 LINE L1 6760 7591 -1 605 216 81 38 chr12 94136997 94137182 -50145307 + MLT1A1 LTR MaLR 185 377 -51 1374 121 0 29 chr12 94137183 94137245 -50145244 + L1P4 LINE L1 5385 5447 -719 2192 195 19 30 chr12 94137245 94137620 -50144869 - MSTB LTR MaLR 0 426 55 2182 140 0 0 chr12 94137620 94137928 -50144561 - AluSg SINE Alu -2 308 1 2192 195 19 30 chr12 94137928 94137983 -50144506 - MSTB LTR MaLR -371 55 1 1374 121 0 29 chr12 94137983 94138160 -50144329 + L1P4 LINE L1 5447 5617 -549 1637 167 191 50 chr12 94138224 94138263 -50144226 - MLT2B1 LTR ERVL 0 520 488 507 17 0 0 chr12 94138263 94138323 -50144166 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1637 167 191 50 chr12 94138323 94138582 -50143907 - MLT2B1 LTR ERVL -32 488 267 2607 119 46 5 chr12 94138582 94138993 -50143496 + MSTA LTR MaLR 1 428 0 1637 167 191 50 chr12 94138993 94139149 -50143340 - MLT2B1 LTR ERVL -253 267 1 22 35 0 0 chr12 94139608 94139637 -50142852 + AT_rich Low_complexity Low_complexity 1 29 0 264 111 0 0 chr12 94140213 94140258 -50142231 + (GA)n Simple_repeat Simple_repeat 2 46 0 1352 195 36 12 chr12 94140345 94140678 -50141811 - MLT1A1 LTR MaLR -4 361 21 22 35 0 0 chr12 94141011 94141040 -50141449 + AT_rich Low_complexity Low_complexity 1 29 0 264 111 0 0 chr12 94141617 94141662 -50140827 + (GA)n Simple_repeat Simple_repeat 2 46 0 2011 169 20 3 chr12 94141749 94142104 -50140385 - MLT1A1 LTR MaLR -4 361 1 452 298 19 19 chr12 94143299 94143460 -50139029 + MER63A DNA MER1_type 48 208 -2 33 0 0 0 chr12 94145068 94145101 -50137388 + AT_rich Low_complexity Low_complexity 1 33 0 757 310 37 33 chr12 94145908 94146179 -50136310 + L2 LINE L2 3042 3313 0 456 325 160 40 chr12 94146583 94147339 -50135150 - L2 LINE L2 -616 2698 1852 244 307 69 20 chr12 94148281 94148382 -50134107 + MER5A DNA MER1_type 43 148 -41 1211 181 5 5 chr12 94148391 94148590 -50133899 - AluJo SINE Alu -15 297 99 256 333 74 0 chr12 94148649 94148730 -50133759 + MIR SINE MIR 34 120 -88 1124 204 4 4 chr12 94149124 94149399 -50133090 - L1 LINE L1 -755 5391 5117 1160 103 15 26 chr12 94149617 94149812 -50132677 + MSTA LTR MaLR 1 193 -235 437 35 0 0 chr12 94149812 94149870 -50132619 - L1PA2 LINE L1 -1119 5027 4970 7781 14 2 1 chr12 94149870 94151037 -50131452 + L1PA2 LINE L1 5022 6189 0 1045 186 59 30 chr12 94151038 94151275 -50131214 + MSTA LTR MaLR 185 428 0 2784 15 6 0 chr12 94151825 94152165 -50130324 + L1HS LINE L1 5812 6153 -2 275 0 29 0 chr12 94152165 94152200 -50130289 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 1045 186 59 30 chr12 94152201 94152438 -50130051 + MSTA LTR MaLR 185 428 0 2247 68 4 0 chr12 94155575 94155886 -50126603 + AluY SINE Alu 1 312 0 22 0 0 0 chr12 94156195 94156217 -50126272 + AT_rich Low_complexity Low_complexity 1 22 0 264 111 0 0 chr12 94157245 94157290 -50125199 + (GA)n Simple_repeat Simple_repeat 1 45 0 403 293 29 7 chr12 94157350 94157367 -50125122 + MIR SINE MIR 120 135 -127 319 25 0 0 chr12 94157367 94157407 -50125082 + L1PA6 LINE L1 6107 6146 -8 403 293 29 7 chr12 94157407 94157529 -50124960 + MIR SINE MIR 135 262 0 1242 208 69 23 chr12 94157860 94158264 -50124225 + MLT2B1 LTR ERVL 1 476 -44 271 149 0 0 chr12 94158317 94158364 -50124125 + MLT2B1 LTR ERVL 469 515 0 221 232 30 10 chr12 94161128 94161227 -50121262 + (TTATA)n Simple_repeat Simple_repeat 3 103 0 707 165 9 0 chr12 94161227 94161342 -50121147 - FLAM_C SINE Alu -21 122 7 521 326 40 6 chr12 94161464 94161688 -50120801 + MIR SINE MIR 20 256 -6 2110 128 5 72 chr12 94162957 94163357 -50119132 - LTR57 LTR ERVL -38 373 1 1571 137 0 0 chr12 94163357 94163605 -50118884 - LTR57-int LTR ERVL 0 5343 5096 892 235 0 4 chr12 94163708 94163938 -50118551 - L1M4 LINE L1 -1343 4803 4575 3754 249 34 12 chr12 94163948 94165287 -50117202 - L1M4 LINE L1 -1889 4257 2889 407 204 112 20 chr12 94165337 94165489 -50117000 + MER7A DNA MER2_type 20 183 -163 1952 144 5 73 chr12 94165723 94166120 -50116369 - LTR57 LTR ERVL -40 371 2 4677 148 9 0 chr12 94166121 94166873 -50115616 - LTR57-int LTR ERVL 0 5343 4585 4018 153 46 5 chr12 94166873 94167637 -50114852 - L1MC1 LINE L1 -90 6243 5449 375 46 3 0 chr12 94170139 94170235 -50112254 - MADE1 DNA Mariner -13 67 1 474 278 35 22 chr12 94170684 94170914 -50111575 + L1ME LINE L1 5544 5776 -345 2472 74 3 3 chr12 94171079 94171390 -50111099 + AluY SINE Alu 1 311 0 286 265 66 7 chr12 94172141 94172277 -50110212 - L1MC1 LINE L1 -1272 4874 4731 583 273 73 18 chr12 94172300 94172641 -50109848 - L1MC1 LINE L1 -3571 2575 2216 1441 146 5 23 chr12 94172650 94172870 -50109619 - AluSg/x SINE Alu -15 297 82 6078 201 40 7 chr12 94172870 94174135 -50108354 + MSTA-int LTR MaLR 345 1651 0 1917 112 155 19 chr12 94174135 94174502 -50107987 + MSTA LTR MaLR 1 417 -11 7348 229 22 19 chr12 94174812 94177142 -50105347 - L1PA15-16 LINE L1 -1808 5041 2703 11790 127 14 20 chr12 94177594 94180053 -50102436 + L1P3 LINE L1 738 3193 -3268 306 206 27 14 chr12 94181524 94181597 -50100892 - MER94 DNA DNA -14 120 47 182 80 0 0 chr12 94183310 94183335 -50099154 + (A)n Simple_repeat Simple_repeat 1 25 0 246 136 0 0 chr12 94184155 94184199 -50098290 + (GA)n Simple_repeat Simple_repeat 1 44 0 462 204 11 0 chr12 94184405 94184498 -50097991 + Tigger3(Golem) DNA MER2_type 9 102 -2927 240 146 0 0 chr12 94184501 94184549 -50097940 + Tigger3(Golem) DNA MER2_type 279 326 -2703 7260 129 7 4 chr12 94185052 94186235 -50096254 - L1PA15-16 LINE L1 -5275 1574 389 597 159 56 0 chr12 94186766 94186873 -50095616 + MER44D DNA MER2_type 1 383 -226 1281 129 22 5 chr12 94186901 94187125 -50095364 + MER44D DNA MER2_type 372 599 -10 2080 86 3 83 chr12 94187660 94187998 -50094491 + AluY SINE Alu 1 311 0 2626 271 31 28 chr12 94188446 94189262 -50093227 - L1PA15-16 LINE L1 -5311 1538 740 7142 143 14 4 chr12 94190196 94191527 -50090962 + L1P LINE L1 3076 4420 -1726 523 167 250 42 chr12 94191647 94191839 -50090650 - MLT1E2 LTR MaLR -391 235 4 1525 214 0 11 chr12 94191839 94192170 -50090319 + AluJo SINE Alu 1 328 0 714 316 53 0 chr12 94192318 94192543 -50089946 - MIR SINE MIR -24 238 2 1491 168 28 0 chr12 94194028 94194314 -50088175 + AluSq SINE Alu 1 294 -19 432 220 168 0 chr12 94194919 94195273 -50087216 + AluSg/x SINE Alu 106 488 0 1301 17 17 22 chr12 94195092 94195325 -50087164 + (GAAA)n Simple_repeat Simple_repeat 1 232 0 22 56 0 0 chr12 94195600 94195636 -50086853 + AT_rich Low_complexity Low_complexity 1 36 0 6214 123 10 16 chr12 94197823 94199044 -50083445 + L1P LINE L1 683 2023 -4123 21 0 0 0 chr12 94200545 94200566 -50081923 + AT_rich Low_complexity Low_complexity 1 21 0 1477 185 69 0 chr12 94201596 94201856 -50080633 + AluJb SINE Alu 1 278 -34 21 0 0 0 chr12 94202119 94202140 -50080349 + AT_rich Low_complexity Low_complexity 1 21 0 1194 227 49 4 chr12 94202787 94203051 -50079438 - AluJb SINE Alu -36 276 1 232 308 58 58 chr12 94203357 94203461 -50079028 + L2 LINE L2 3004 3107 -165 2649 101 5 0 chr12 94203888 94204303 -50078186 + L1PA7 LINE L1 3223 3639 -2507 10419 90 3 14 chr12 94204303 94205752 -50076737 + L1PA7 LINE L1 3880 5316 -838 2096 118 10 13 chr12 94205752 94206058 -50076431 + AluSq SINE Alu 1 305 -8 10419 90 3 14 chr12 94206058 94206885 -50075604 + L1PA7 LINE L1 5316 6151 -3 32 26 0 0 chr12 94207144 94207183 -50075306 + AT_rich Low_complexity Low_complexity 1 39 0 251 352 39 39 chr12 94207774 94207902 -50074587 + L2 LINE L2 3184 3311 -2 2723 258 46 30 chr12 94209670 94210679 -50071810 - L1PA15-16 LINE L1 -5290 1559 740 1230 236 174 45 chr12 94211132 94211837 -50070652 + L1MC4 LINE L1 5322 6117 -1925 * 2397 166 69 61 chr12 94211283 94211893 -50070596 + L1MB8 LINE L1 5546 6160 -18 383 265 148 32 chr12 94211921 94212110 -50070379 + MIR SINE MIR 18 228 -34 27 29 0 0 chr12 94212277 94212311 -50070178 + AT_rich Low_complexity Low_complexity 1 34 0 1262 183 25 88 chr12 94212318 94212495 -50069994 - AluJo SINE Alu -15 297 147 1530 183 30 0 chr12 94212495 94212757 -50069732 - AluJb SINE Alu 0 312 43 1262 183 25 88 chr12 94212757 94212896 -50069593 - AluJo SINE Alu -165 147 1 23 54 0 0 chr12 94212907 94212944 -50069545 + AT_rich Low_complexity Low_complexity 1 37 0 216 274 0 0 chr12 94212998 94213049 -50069440 + L2 LINE L2 3222 3272 0 247 332 142 11 chr12 94213049 94213239 -50069250 + MIR SINE MIR 42 256 -6 862 304 43 0 chr12 94215479 94215801 -50066688 + L2 LINE L2 902 1237 -2077 1389 289 161 8 chr12 94215805 94216407 -50066082 + L2 LINE L2 1468 2161 -1153 5688 75 10 1 chr12 94216520 94217835 -50064654 + L1PA7 LINE L1 4718 6039 -115 216 111 0 0 chr12 94218607 94218643 -50063846 + (TA)n Simple_repeat Simple_repeat 2 37 0 1673 167 33 17 chr12 94220730 94221029 -50061460 + AluJb SINE Alu 5 308 -4 2645 218 100 43 chr12 94221037 94222309 -50060180 - L1ME2 LINE L1 -9 6155 4758 2383 86 0 0 chr12 94222309 94222610 -50059879 + AluSx SINE Alu 2 302 -10 2645 218 100 43 chr12 94222610 94223057 -50059432 - L1ME2 LINE L1 -1406 4758 4338 351 0 0 0 chr12 94223332 94223371 -50059118 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 404 182 0 0 chr12 94223376 94223442 -50059047 - AluJ/FRAM SINE Alu -30 282 217 261 0 0 0 chr12 94223452 94223481 -50059008 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1856 171 4 0 chr12 94223482 94223762 -50058727 - AluJb SINE Alu -31 281 1 1136 271 60 14 chr12 94223913 94224349 -50058140 - Charlie7 DNA MER1_type -1888 724 269 183 129 0 0 chr12 94224650 94224681 -50057808 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 339 180 11 60 chr12 94225705 94225888 -50056601 + (TA)n Simple_repeat Simple_repeat 2 175 0 852 198 17 6 chr12 94225888 94226065 -50056424 - MLT2B1 LTR ERVL -40 480 302 748 284 41 22 chr12 94226072 94226487 -50056002 - HAL1 LINE L1 -369 2138 1716 228 121 76 0 chr12 94226922 94226988 -50055501 + (TA)n Simple_repeat Simple_repeat 2 72 0 369 276 110 16 chr12 94227535 94227662 -50054827 + L2 LINE L2 3175 3313 0 1760 159 3 62 chr12 94227841 94228162 -50054327 - AluJb SINE Alu -10 302 1 197 314 29 69 chr12 94228164 94228266 -50054223 - MIR SINE MIR -147 115 18 371 224 11 32 chr12 94228866 94228962 -50053527 + AluJ/FLAM SINE Alu 2 93 -209 347 289 46 61 chr12 94229034 94229231 -50053258 + MIR SINE MIR 20 213 -49 22 0 0 0 chr12 94229688 94229710 -50052779 + AT_rich Low_complexity Low_complexity 1 22 0 2126 129 0 0 chr12 94229749 94230043 -50052446 - AluSq SINE Alu -19 294 1 515 285 16 42 chr12 94230270 94230463 -50052026 - MIR SINE MIR -26 236 49 336 375 77 36 chr12 94230461 94230928 -50051561 - L2 LINE L2 -593 2721 2236 * 255 279 59 0 chr12 94231059 94231127 -50051362 - L2 LINE L2 0 3313 3242 938 208 0 12 chr12 94231952 94232120 -50050369 - AluJo SINE Alu 0 302 137 762 143 8 45 chr12 94232127 94232149 -50050340 - AluJo SINE Alu -181 131 110 2384 127 8 16 chr12 94232149 94232527 -50049962 - THE1C LTR MaLR 0 375 1 762 143 8 45 chr12 94232527 94232637 -50049852 - AluJo SINE Alu -202 110 4 194 276 65 57 chr12 94232641 94232764 -50049725 - L2 LINE L2 -1608 1706 1583 198 325 12 12 chr12 94233055 94233135 -50049354 + L2 LINE L2 3229 3308 -5 1104 276 84 0 chr12 94234694 94235005 -50047484 + LTR16C LTR ERVL 155 491 0 616 268 56 52 chr12 94235101 94235317 -50047172 - MIR SINE MIR -14 248 33 366 23 0 0 chr12 94235382 94235425 -50047064 + (TG)n Simple_repeat Simple_repeat 2 44 0 1066 205 5 5 chr12 94236063 94236273 -50046216 - MER2 DNA MER2_type -135 210 1 231 339 83 42 chr12 94236682 94236850 -50045639 - L2 LINE L2 0 3313 3139 189 107 0 0 chr12 94236906 94236934 -50045555 + (GA)n Simple_repeat Simple_repeat 1 28 0 25945 124 11 74 chr12 94237580 94242542 -50039947 + L1P LINE L1 13 4665 -1481 9850 235 72 26 chr12 94242644 94243727 -50038762 - L1PB4 LINE L1 -56 6802 5770 1716 189 0 14 chr12 94243727 94244012 -50038477 + AluSx SINE Alu 1 281 -31 9850 235 72 26 chr12 94244012 94247601 -50034888 - L1PB4 LINE L1 -1088 5770 1945 22 35 0 0 chr12 94247663 94247692 -50034797 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr12 94247739 94247761 -50034728 + AT_rich Low_complexity Low_complexity 1 22 0 42347 36 22 2 chr12 94247761 94253786 -50028703 - L1PA2 LINE L1 -3 6152 1 430 240 16 44 chr12 94253799 94253982 -50028507 - L1PB4 LINE L1 -4985 1864 1687 227 67 56 56 chr12 94253984 94254074 -50028415 + (TA)n Simple_repeat Simple_repeat 1 90 0 373 315 23 15 chr12 94254791 94254921 -50027568 - MER5A DNA MER1_type 0 189 59 2154 127 0 0 chr12 94254931 94255230 -50027259 - AluSq SINE Alu -14 299 1 745 301 4 55 chr12 94256228 94256500 -50025989 + MIR SINE MIR 3 260 -2 234 254 91 36 chr12 94256575 94256590 -50025899 - L1MA10 LINE L1 -3 6331 6317 1027 207 28 83 chr12 94256590 94256698 -50025791 - L1ME2 LINE L1 -9 6224 6112 1441 168 20 48 chr12 94256698 94256990 -50025499 + AluJo SINE Alu 3 286 -26 1027 207 28 83 chr12 94256990 94257205 -50025284 - L1ME2 LINE L1 -121 6112 5919 1746 229 55 22 chr12 94257338 94257879 -50024610 - L1ME2 LINE L1 -350 5883 5325 286 264 65 19 chr12 94257933 94258088 -50024401 - L1ME2 LINE L1 -986 5229 5068 1871 138 191 6 chr12 94258088 94258449 -50024040 + MSTA LTR MaLR 1 428 0 2174 125 14 0 chr12 94258449 94258802 -50023687 + MSTA-int LTR MaLR 1 358 -1293 1382 146 13 21 chr12 94258802 94259035 -50023454 - AluSg/x SINE Alu 0 312 82 6654 195 43 5 chr12 94259035 94260294 -50022195 + MSTA-int LTR MaLR 345 1651 0 2055 112 155 19 chr12 94260294 94260661 -50021828 + MSTA LTR MaLR 1 417 -11 448 283 97 16 chr12 94260674 94260921 -50021568 - L1ME2 LINE L1 -1149 5066 4800 754 261 73 18 chr12 94260944 94261285 -50021204 - L1ME2 LINE L1 -3571 2644 2285 1974 152 3 3 chr12 94261294 94261591 -50020898 - AluSx SINE Alu -15 297 1 909 233 59 11 chr12 94261693 94261980 -50020509 - L1ME2 LINE L1 -4320 2076 1776 851 263 53 68 chr12 94262072 94262411 -50020078 - LTR16A1 LTR ERVL -13 444 111 717 344 28 35 chr12 94262525 94263097 -50019392 + ERVL LTR ERVL 4751 5318 -446 515 243 175 39 chr12 94263316 94263522 -50018967 + LTR16A1 LTR ERVL 44 277 -180 284 231 0 0 chr12 94263586 94263638 -50018851 + LTR16A1 LTR ERVL 406 457 0 247 305 39 16 chr12 94263648 94263776 -50018713 - L1ME2 LINE L1 -5917 288 158 375 287 59 12 chr12 94263893 94264029 -50018460 - MIR SINE MIR -68 140 43 213 39 0 0 chr12 94264588 94264614 -50017875 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 4094 199 18 26 chr12 94264715 94265671 -50016818 - L1 LINE L1 -1241 4905 3958 4239 197 13 49 chr12 94265682 94267104 -50015385 + L1MA10 LINE L1 4939 6146 -18 1124 294 123 5 chr12 94267176 94267608 -50014881 + L2 LINE L2 1838 2320 -994 1010 285 81 43 chr12 94267611 94267983 -50014506 + L2 LINE L2 2589 2974 -340 429 236 181 71 chr12 94268010 94268264 -50014225 + L2 LINE L2 3031 3312 -1 463 328 70 29 chr12 94269896 94270210 -50012279 + HAL1 LINE L1 1115 1441 -1066 2235 116 7 0 chr12 94270210 94270511 -50011978 + AluSx SINE Alu 1 303 -9 457 114 11 11 chr12 94270511 94270599 -50011890 + (GGAA)n Simple_repeat Simple_repeat 1 88 0 254 282 26 58 chr12 94270681 94270837 -50011652 + HAL1b LINE L1 431 581 -767 246 136 0 0 chr12 94271094 94271138 -50011351 + (GA)n Simple_repeat Simple_repeat 1 44 0 208 250 0 0 chr12 94271393 94271449 -50011040 + T-rich Low_complexity Low_complexity 1 56 0 493 204 11 0 chr12 94271960 94272053 -50010436 + Tigger3b DNA MER2_type 9 102 -1129 5126 151 39 9 chr12 94272056 94272981 -50009508 + Tigger3b DNA MER2_type 279 1231 0 1587 203 7 3 chr12 94274134 94274429 -50008060 + AluJo SINE Alu 1 296 -16 301 260 42 21 chr12 94274446 94274542 -50007947 - L1MC4 LINE L1 -1333 6709 6612 519 146 26 43 chr12 94274562 94275073 -50007416 + (TA)n Simple_repeat Simple_repeat 1 502 0 2174 117 56 14 chr12 94275253 94275613 -50006876 - THE1C LTR MaLR 0 375 1 9054 136 75 4 chr12 94275613 94277089 -50005400 - THE1C-int LTR MaLR 0 1580 1 2218 119 50 8 chr12 94277089 94277449 -50005040 - THE1C LTR MaLR 0 375 1 238 323 24 12 chr12 94277952 94278119 -50004370 + L1M4 LINE L1 3718 3886 -2260 2194 122 0 0 chr12 94278382 94278677 -50003812 + AluSx SINE Alu 1 295 -17 556 148 19 0 chr12 94278677 94278785 -50003704 + (TA)n Simple_repeat Simple_repeat 1 110 0 1356 244 121 33 chr12 94278790 94279451 -50003038 - HAL1b LINE L1 -56 1292 574 450 274 26 0 chr12 94279462 94279579 -50002910 - HAL1b LINE L1 -825 523 404 2186 209 9 37 chr12 94279584 94280044 -50002445 + MLT2B2 LTR ERVL 1 447 -68 240 35 0 0 chr12 94280046 94280075 -50002414 + (TC)n Simple_repeat Simple_repeat 2 30 0 304 307 23 0 chr12 94280085 94280173 -50002316 - L1MC4 LINE L1 -1339 6703 6614 360 0 0 0 chr12 94280257 94280297 -50002192 + (TA)n Simple_repeat Simple_repeat 2 41 0 2273 47 0 14 chr12 94281655 94281934 -50000555 - AluY SINE Alu -2 309 35 665 312 63 19 chr12 94281956 94282225 -50000264 + L2 LINE L2 2173 2453 -861 807 194 56 155 chr12 94282225 94282729 -49999760 - LTR37B LTR ERV1 0 468 15 345 250 98 0 chr12 94282732 94282844 -49999645 + L2 LINE L2 2443 2565 -749 887 267 146 39 chr12 94283133 94283796 -49998693 + L2 LINE L2 2574 3312 -1 47 0 0 0 chr12 94284242 94284289 -49998200 + AT_rich Low_complexity Low_complexity 1 47 0 345 75 0 0 chr12 94284582 94284635 -49997854 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr12 94284783 94284805 -49997684 + AT_rich Low_complexity Low_complexity 1 22 0 322 275 146 22 chr12 94286010 94286188 -49996301 - MIR SINE MIR 0 262 63 270 237 86 11 chr12 94286267 94286360 -49996129 - MIR SINE MIR -71 191 92 2340 159 47 2 chr12 94286366 94286775 -49995714 + MSTB1 LTR MaLR 6 432 0 472 346 97 61 chr12 94286823 94287619 -49994870 - L2 LINE L2 -4 3268 2443 23 0 0 0 chr12 94287862 94287885 -49994604 + AT_rich Low_complexity Low_complexity 1 23 0 530 304 147 55 chr12 94289511 94290732 -49991757 - L1M4 LINE L1 -2527 3619 2287 231 339 0 0 chr12 94292386 94292448 -49990041 + tRNA-Ile-ATT tRNA tRNA 10 71 -6 336 333 7 42 chr12 94292457 94292639 -49989850 + MIR3 SINE MIR 5 175 -61 310 253 168 11 chr12 94292775 94292870 -49989619 - MER81 DNA DNA -1 113 4 223 349 31 39 chr12 94292973 94293102 -49989387 - L2 LINE L2 -26 3287 3160 212 291 58 47 chr12 94293330 94293416 -49989073 + L2 LINE L2 3227 3313 0 2178 84 3 75 chr12 94294182 94294517 -49987972 - AluY SINE Alu 0 311 1 1353 129 22 5 chr12 94295053 94295277 -49987212 - MER44D DNA MER2_type -10 599 372 635 159 56 0 chr12 94295305 94295412 -49987077 - MER44D DNA MER2_type -226 383 1 2360 58 13 26 chr12 94295950 94296259 -49986230 - AluY SINE Alu -5 306 2 1504 177 69 0 chr12 94297019 94297279 -49985210 - AluJb SINE Alu -34 278 1 201 222 0 0 chr12 94298012 94298075 -49984414 + (TA)n Simple_repeat Simple_repeat 2 64 0 213 284 46 37 chr12 94298183 94298292 -49984197 - MIR SINE MIR -32 230 121 300 308 19 47 chr12 94298524 94298631 -49983858 + L2 LINE L2 2940 3043 -229 222 183 200 0 chr12 94298732 94298792 -49983697 + L2 LINE L2 3242 3313 0 605 263 36 31 chr12 94299787 94299981 -49982508 + MIR SINE MIR 13 207 -55 325 327 66 38 chr12 94300822 94301033 -49981456 - MIR SINE MIR -44 218 2 180 333 27 63 chr12 94301385 94301607 -49980882 - L2 LINE L2 0 3313 3100 243 225 0 0 chr12 94302377 94302448 -49980041 + (TA)n Simple_repeat Simple_repeat 2 72 0 421 285 84 36 chr12 94302504 94302921 -49979568 - L1ME4a LINE L1 -7 6114 5678 21 0 0 0 chr12 94304088 94304109 -49978380 + AT_rich Low_complexity Low_complexity 1 21 0 1797 155 65 0 chr12 94304383 94304855 -49977634 + AluJo SINE Alu 1 491 0 1301 17 17 22 chr12 94304674 94304907 -49977582 + (GAAA)n Simple_repeat Simple_repeat 1 232 0 23 0 0 0 chr12 94305442 94305465 -49977024 + AT_rich Low_complexity Low_complexity 1 23 0 1480 53 5 26 chr12 94306693 94306882 -49975607 - AluY SINE Alu -16 295 111 195 295 168 0 chr12 94307222 94307317 -49975172 + L2 LINE L2 3181 3291 -22 573 328 54 12 chr12 94308128 94308369 -49974120 - MIR SINE MIR 0 262 12 225 290 167 22 chr12 94308985 94309123 -49973366 + L2 LINE L2 2896 3053 -219 326 310 99 18 chr12 94309374 94309545 -49972944 + MIR SINE MIR 74 258 -4 2086 207 94 50 chr12 94310013 94310608 -49971881 - MLT1E2 LTR MaLR -2 624 4 1572 204 0 11 chr12 94310608 94310938 -49971551 + AluJo SINE Alu 1 327 0 764 311 53 0 chr12 94311085 94311310 -49971179 - MIR SINE MIR -24 238 2 194 303 173 49 chr12 94311484 94311646 -49970843 - MIR SINE MIR -67 195 14 431 294 156 28 chr12 94311710 94311921 -49970568 + MIR SINE MIR 12 249 -13 342 192 27 14 chr12 94313176 94313249 -49969240 + MER94 DNA DNA 47 120 -14 331 244 39 146 chr12 94314569 94314774 -49967715 - L2 LINE L2 -86 3186 3004 1527 186 45 4 chr12 94315080 94315344 -49967145 + AluJb SINE Alu 1 275 -37 192 250 13 53 chr12 94316004 94316080 -49966409 - MIR SINE MIR -45 217 145 418 306 6 19 chr12 94316416 94316576 -49965913 + CT-rich Low_complexity Low_complexity 4 161 0 351 304 174 30 chr12 94316728 94316929 -49965560 - MIR SINE MIR -13 249 20 435 255 234 72 chr12 94316981 94317210 -49965279 - L3 LINE CR1 0 1577 1386 499 213 15 44 chr12 94317210 94317346 -49965143 - MER94 DNA DNA 0 134 3 435 255 234 72 chr12 94317346 94317492 -49964997 - L3 LINE CR1 -191 1386 1141 1790 212 30 51 chr12 94317606 94318078 -49964411 - MLT1C LTR MaLR 0 467 6 212 191 85 0 chr12 94318224 94318271 -49964218 + L2 LINE L2 3261 3311 -2 234 0 0 0 chr12 94318614 94318640 -49963849 + (T)n Simple_repeat Simple_repeat 1 26 0 268 240 120 67 chr12 94319161 94319311 -49963178 + L2 LINE L2 3108 3265 -48 227 319 167 24 chr12 94319931 94320260 -49962229 - L2 LINE L2 -17 3296 2921 1925 160 35 16 chr12 94320305 94320673 -49961816 - THE1C LTR MaLR 0 375 1 9082 126 79 10 chr12 94320677 94322151 -49960338 - THE1C-int LTR MaLR -4 1576 1 1988 142 29 27 chr12 94322151 94322525 -49959964 - THE1C LTR MaLR 0 375 1 298 269 173 34 chr12 94322537 94322745 -49959744 - L2 LINE L2 -455 2859 2623 22 35 0 0 chr12 94323835 94323864 -49958625 + AT_rich Low_complexity Low_complexity 1 29 0 194 306 81 0 chr12 94323865 94323927 -49958562 + L2 LINE L2 3154 3220 -52 4081 145 16 66 chr12 94324189 94325009 -49957480 + MER4E LTR ERV1 1 779 0 2874 152 109 9 chr12 94325440 94325974 -49956515 + LTR59 LTR ERV1 1 587 -10 227 221 59 29 chr12 94326796 94326864 -49955625 + L1MEd LINE L1 1081 1150 -4969 292 298 94 29 chr12 94326914 94327085 -49955404 + HAL1 LINE L1 1447 1628 -879 1487 229 79 77 chr12 94327462 94327996 -49954493 - MLT1F1 LTR MaLR -7 560 1 320 263 101 95 chr12 94328025 94328383 -49954106 + HAL1 LINE L1 826 1185 -1322 236 184 58 58 chr12 94328405 94328492 -49953997 + L1MCa LINE L1 1245 1331 -5095 2004 270 31 11 chr12 94328758 94329302 -49953187 - MLT1H1 LTR MaLR 0 555 1 25 65 0 0 chr12 94329657 94329703 -49952786 + AT_rich Low_complexity Low_complexity 1 46 0 2275 104 7 0 chr12 94330622 94330929 -49951560 + AluSc SINE Alu 1 309 0 33 0 0 0 chr12 94332208 94332241 -49950248 + AT_rich Low_complexity Low_complexity 1 33 0 268 234 54 84 chr12 94333787 94333954 -49948535 - MER103 DNA DNA -2 164 3 669 249 41 0 chr12 94334377 94334546 -49947943 + MIR SINE MIR 78 253 -9 454 284 37 96 chr12 94334943 94335351 -49947138 - MLT1J LTR MaLR -27 484 101 211 222 32 32 chr12 94335742 94335805 -49946684 + (TGAA)n Simple_repeat Simple_repeat 2 64 0 28 0 0 0 chr12 94336520 94336548 -49945941 + AT_rich Low_complexity Low_complexity 1 28 0 816 197 0 0 chr12 94337929 94338071 -49944418 + AluJb SINE Alu 154 295 -17 1731 171 14 25 chr12 94338546 94338859 -49943630 - AluJo SINE Alu 0 310 1 311 266 186 0 chr12 94339122 94339235 -49943254 - MER94 DNA DNA 0 134 1 332 324 39 0 chr12 94342335 94342437 -49940052 + L2 LINE L2 3194 3299 -14 235 341 59 107 chr12 94342473 94342763 -49939726 + L2 LINE L2 2982 3257 -15 280 353 90 16 chr12 94342868 94342990 -49939499 + MIR3 SINE MIR 48 178 -30 10344 182 60 73 chr12 94343264 94344859 -49937630 + L1MCa LINE L1 4 1619 -4807 2069 139 0 19 chr12 94344859 94345175 -49937314 + AluSq SINE Alu 1 310 -3 10344 182 60 73 chr12 94345175 94347263 -49935226 + L1MCa LINE L1 1619 3635 -2791 1173 244 14 18 chr12 94347263 94347546 -49934943 + AluJo SINE Alu 1 282 -30 2879 269 24 8 chr12 94347548 94348435 -49934054 + L1MCa LINE L1 3603 4503 -1923 1839 183 97 6 chr12 94348439 94348799 -49933690 - MSTA LTR MaLR 0 428 36 8912 154 22 31 chr12 94348799 94350380 -49932109 - MSTA-int LTR MaLR -11 1569 3 1354 172 131 10 chr12 94350384 94350681 -49931808 - MSTA LTR MaLR -2 426 94 2282 113 50 16 chr12 94350681 94351044 -49931445 + THE1C LTR MaLR 1 375 0 3748 124 71 3 chr12 94351046 94351641 -49930848 + THE1C-int LTR MaLR 3 637 -943 328 213 106 11 chr12 94351641 94351735 -49930754 + MLT1G1 LTR MaLR 249 351 -191 461 172 108 0 chr12 94351760 94351853 -49930636 + MLT1G1 LTR MaLR 493 595 0 886 234 16 5 chr12 94351938 94352130 -49930359 + MIR SINE MIR 1 194 -68 702 150 29 17 chr12 94352279 94352452 -49930037 + CT-rich Low_complexity Low_complexity 2 176 0 1859 160 17 3 chr12 94352616 94352909 -49929580 + AluJo SINE Alu 3 299 -13 564 241 83 7 chr12 94353864 94354009 -49928480 - MIR SINE MIR -16 246 91 1155 250 69 3 chr12 94354131 94354451 -49928038 - MER58B DNA MER1_type 0 341 1 214 350 194 25 chr12 94354511 94354831 -49927658 - L2 LINE L2 -342 2972 2599 564 317 106 41 chr12 94354880 94355221 -49927268 + L2 LINE L2 2897 3259 -13 185 310 0 0 chr12 94355392 94355450 -49927039 - L2 LINE L2 -959 2355 2298 38 22 0 0 chr12 94355564 94355609 -49926880 + AT_rich Low_complexity Low_complexity 1 45 0 2086 137 0 10 chr12 94355811 94356117 -49926372 - AluSx SINE Alu -9 303 1 1760 235 22 8 chr12 94356446 94356936 -49925553 + L1M4 LINE L1 3472 3968 -2178 185 356 0 0 chr12 94357755 94357814 -49924675 + MIR SINE MIR 86 144 -64 210 305 85 12 chr12 94358308 94358390 -49924099 + L2 LINE L2 3180 3267 -5 198 222 0 0 chr12 94358390 94358444 -49924045 + GA-rich Low_complexity Low_complexity 1 54 0 1840 160 0 31 chr12 94358692 94359011 -49923478 - AluJb SINE Alu -3 309 1 346 340 81 25 chr12 94359176 94359373 -49923116 + MIR SINE MIR 20 227 -35 2795 94 3 0 chr12 94359657 94360031 -49922458 - THE1C LTR MaLR 0 375 1 511 231 75 37 chr12 94362069 94362203 -49920286 - MIR SINE MIR -24 238 100 639 309 29 5 chr12 94362245 94362455 -49920034 - MIR SINE MIR -38 224 10 538 282 0 0 chr12 94362701 94362811 -49919678 - MER81 DNA DNA 0 114 5 212 383 32 27 chr12 94363676 94363864 -49918625 - L2 LINE L2 -240 3032 2844 257 242 0 0 chr12 94363972 94364034 -49918455 - MIR SINE MIR -2 260 199 524 197 101 28 chr12 94364045 94364223 -49918266 - Charlie1 DNA MER1_type -182 2579 2389 282 412 10 0 chr12 94364227 94364329 -49918160 - L2 LINE L2 -32 3240 3138 45 0 0 0 chr12 94364516 94364561 -49917928 + AT_rich Low_complexity Low_complexity 1 45 0 198 103 0 0 chr12 94365304 94365333 -49917156 + (TCC)n Simple_repeat Simple_repeat 3 31 0 199 261 0 0 chr12 94365528 94365574 -49916915 + MIR SINE MIR 102 147 -115 2242 106 0 10 chr12 94365678 94365980 -49916509 - AluSx SINE Alu -13 299 1 22 35 0 0 chr12 94366823 94366852 -49915637 + AT_rich Low_complexity Low_complexity 1 29 0 1559 181 87 10 chr12 94367026 94367314 -49915175 - AluJb SINE Alu -2 310 1 1324 190 8 16 chr12 94368387 94368645 -49913844 - AluJo SINE Alu -33 279 24 6780 65 6 2 chr12 94368778 94370008 -49912481 + L1PA7 LINE L1 4911 6143 -11 379 365 70 7 chr12 94370236 94370521 -49911968 + L2 LINE L2 1780 2082 -1232 321 285 73 30 chr12 94370753 94370918 -49911571 + MLT1K LTR MaLR 407 578 -10 573 329 59 43 chr12 94371097 94371822 -49910667 + L2 LINE L2 2243 3055 -217 688 397 37 24 chr12 94372735 94373354 -49909135 + L2 LINE L2 2646 3272 0 2235 115 0 6 chr12 94373874 94374187 -49908302 + AluSx SINE Alu 2 312 0 556 251 122 45 chr12 94374405 94374652 -49907837 - HAL1 LINE L1 -1316 1191 926 1016 101 5 101 chr12 94374663 94374881 -49907608 - AluSg/x SINE Alu 0 312 137 1278 323 100 24 chr12 94374887 94375724 -49906765 - HAL1 LINE L1 -1603 904 4 4937 223 59 106 chr12 94375940 94377053 -49905436 + L1MD1 LINE L1 2850 4014 -2345 2524 153 25 44 chr12 94377053 94377529 -49904960 - MLT1C LTR MaLR 0 467 1 4937 223 59 106 chr12 94377529 94379522 -49902967 + L1MD1 LINE L1 4014 5886 -473 2377 169 47 7 chr12 94379522 94379965 -49902524 - LOR1b LTR ERV1 0 461 1 4937 223 59 106 chr12 94379965 94380418 -49902071 + L1MD1 LINE L1 5886 6359 0 805 188 0 0 chr12 94380472 94380605 -49901884 + FLAM_C SINE Alu 1 133 0 237 346 58 10 chr12 94380745 94380849 -49901640 + L2 LINE L2 3200 3308 -5 1206 272 72 47 chr12 94380962 94381667 -49900822 + L1ME1 LINE L1 1192 1914 -4482 2134 255 87 49 chr12 94381687 94382922 -49899567 + L1ME1 LINE L1 2256 3537 -2678 2006 120 36 26 chr12 94382926 94383234 -49899255 - AluSq SINE Alu -2 311 1 3931 245 105 47 chr12 94383256 94385251 -49897238 + L1ME1 LINE L1 3818 5967 -268 245 51 26 0 chr12 94385251 94385290 -49897199 + (TA)n Simple_repeat Simple_repeat 2 41 0 3931 245 105 47 chr12 94385290 94385568 -49896921 + L1ME1 LINE L1 5967 6227 -8 250 366 101 13 chr12 94386185 94386502 -49895987 - L2 LINE L2 -940 2374 2030 597 183 0 30 chr12 94387021 94387152 -49895337 - FLAM_C SINE Alu 0 143 17 232 296 20 59 chr12 94387313 94387465 -49895024 - L2 LINE L2 0 3313 3168 1572 186 3 17 chr12 94387670 94387960 -49894529 - AluJb SINE Alu -26 286 1 9013 75 0 0 chr12 94387996 94389967 -49892522 + L1PA5 LINE L1 4179 6153 -1 494 294 183 20 chr12 94390041 94390391 -49892098 - MLT1I LTR MaLR 0 409 3 21 57 0 0 chr12 94391335 94391370 -49891119 + AT_rich Low_complexity Low_complexity 1 35 0 322 244 197 24 chr12 94391442 94391569 -49890920 + L2 LINE L2 3165 3313 0 1557 221 24 34 chr12 94391956 94392368 -49890121 - MLT2D LTR ERVL -6 408 1 257 350 36 29 chr12 94394082 94394219 -49888270 + L2 LINE L2 3134 3271 -1 1525 289 96 40 chr12 94394385 94395199 -49887290 + L1M4 LINE L1 17 875 -5667 359 247 45 45 chr12 94395282 94395436 -49887053 + L1M4 LINE L1 880 1033 -5509 933 229 19 37 chr12 94395436 94395650 -49886839 - MER82 DNA MER2_type 0 653 444 225 196 0 0 chr12 94395851 94395897 -49886592 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 227 174 0 0 chr12 94395897 94395943 -49886546 - LTR66 LTR ERVL -171 439 394 391 176 10 29 chr12 94395992 94396094 -49886395 + (TA)n Simple_repeat Simple_repeat 2 101 0 232 180 0 0 chr12 94396094 94396144 -49886345 - L1MC4 LINE L1 -1339 6703 6654 270 193 0 0 chr12 94396169 94396226 -49886263 + (CA)n Simple_repeat Simple_repeat 2 58 0 387 269 0 0 chr12 94396226 94396319 -49886170 - MER82 DNA MER2_type -559 94 2 1747 257 106 51 chr12 94396319 94397142 -49885347 + L1M4 LINE L1 1036 1812 -5013 1819 151 58 30 chr12 94397142 94397506 -49884983 - THE1C LTR MaLR -1 374 1 9629 134 13 36 chr12 94397506 94399123 -49883366 - THE1C-int LTR MaLR 0 1580 1 1589 141 54 90 chr12 94399123 94399512 -49882977 - THE1C LTR MaLR 0 375 1 1747 257 106 51 chr12 94399512 94399976 -49882513 + L1M4 LINE L1 1811 2547 -4278 956 206 20 20 chr12 94399970 94400174 -49882315 + L1M1 LINE L1 12 215 -7350 * 1931 123 8 44 chr12 94400175 94400533 -49881956 - MER4A LTR ERV1 0 664 261 4293 129 73 47 chr12 94400612 94401464 -49881025 - MER4-int LTR ERV1 -2 6596 5723 10409 114 43 62 chr12 94401466 94403452 -49879037 + L1M1 LINE L1 1755 3705 -3860 1278 224 32 11 chr12 94403449 94403797 -49878692 + L1 LINE L1 4777 5131 -1015 * 1136 186 9 5 chr12 94403797 94404012 -49878477 - MER52C LTR ERV1 -1062 216 1 391 310 70 13 chr12 94404016 94404174 -49878315 + MLT1I LTR MaLR 102 268 -141 25 0 0 0 chr12 94404905 94404930 -49877559 + AT_rich Low_complexity Low_complexity 1 25 0 184 222 33 89 chr12 94405207 94405297 -49877192 - L2 LINE L2 -3174 140 56 1799 135 0 63 chr12 94405655 94405973 -49876516 + AluJb SINE Alu 1 298 -14 42208 36 24 2 chr12 94406385 94412407 -49870082 + L1PA3 LINE L1 2 6155 0 439 188 38 30 chr12 94412429 94412562 -49869927 + Charlie5 DNA MER1_type 2355 2488 -124 21 57 0 0 chr12 94412640 94412675 -49869814 + AT_rich Low_complexity Low_complexity 1 35 0 234 305 0 9 chr12 94412719 94412732 -49869757 - L1MA10 LINE L1 -2 6332 6320 308 235 19 77 chr12 94412732 94412941 -49869548 - L1ME2 LINE L1 -9 6224 5980 * 836 263 59 3 chr12 94412940 94413244 -49869245 - L1ME2 LINE L1 -1560 4655 4335 1051 308 77 26 chr12 94413256 94414061 -49868428 - L1ME2 LINE L1 -5144 1252 407 2193 64 0 4 chr12 94414108 94414388 -49868101 - AluY SINE Alu -32 279 1 260 218 115 11 chr12 94414930 94415017 -49867472 + LTR67 LTR ERVL 432 527 -30 1183 251 150 20 chr12 94415857 94416304 -49866185 + MLT1J LTR MaLR 1 505 -6 329 278 83 24 chr12 94416382 94416551 -49865938 - L1ME LINE L1 -442 5679 5501 21 0 0 0 chr12 94416568 94416589 -49865900 + AT_rich Low_complexity Low_complexity 1 21 0 318 266 89 19 chr12 94416727 94416885 -49865604 - L1ME LINE L1 -872 5274 5106 226 284 37 18 chr12 94416958 94417067 -49865422 - L1ME LINE L1 -1133 5013 4903 1762 181 0 13 chr12 94417658 94417973 -49864516 - AluJo SINE Alu -1 311 1 509 282 30 0 chr12 94418622 94418753 -49863736 - MIR SINE MIR -70 192 58 2326 106 0 10 chr12 94418929 94419240 -49863249 - AluSx SINE Alu -4 308 1 477 229 0 0 chr12 94420902 94421011 -49861478 + AluSg/x SINE Alu 193 301 -9 1336 334 94 31 chr12 94421384 94422599 -49859890 + L2 LINE L2 2019 3313 0 285 75 0 0 chr12 94423272 94423312 -49859177 + (CA)n Simple_repeat Simple_repeat 1 40 0 349 250 55 49 chr12 94423427 94423600 -49858889 - L1MC4a LINE L1 -329 5841 5681 21 36 0 0 chr12 94424201 94424229 -49858260 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 94424620 94424641 -49857848 + AT_rich Low_complexity Low_complexity 1 21 0 1707 165 10 20 chr12 94426132 94426435 -49856054 - AluJo SINE Alu -12 300 1 496 264 44 19 chr12 94427453 94427612 -49854877 - MIR SINE MIR -17 245 83 302 301 142 34 chr12 94427625 94427864 -49854625 + L2 LINE L2 2397 2661 -653 189 171 0 0 chr12 94427892 94427927 -49854562 + CT-rich Low_complexity Low_complexity 2 36 0 218 200 91 0 chr12 94428266 94428321 -49854168 - MIR SINE MIR -85 177 118 206 189 0 0 chr12 94428363 94428400 -49854089 + MIR SINE MIR 220 256 -6 465 342 39 31 chr12 94428480 94428737 -49853752 + MIR SINE MIR 3 261 -1 379 274 137 26 chr12 94430661 94430814 -49851675 - Charlie8 DNA MER1_type -2163 254 85 633 288 35 47 chr12 94431161 94431418 -49851071 - MIR SINE MIR -6 256 3 838 258 85 73 chr12 94431690 94431936 -49850553 - LTR16A1 LTR ERVL 0 457 203 2098 128 19 27 chr12 94431936 94432311 -49850178 + THE1C LTR MaLR 4 375 0 838 258 85 73 chr12 94432311 94432463 -49850026 - LTR16A1 LTR ERVL -254 203 54 1653 142 58 71 chr12 94433752 94433826 -49848663 - THE1C LTR MaLR 0 375 302 1945 173 7 0 chr12 94433826 94434133 -49848356 + AluSx SINE Alu 3 311 -1 1653 142 58 71 chr12 94434133 94434438 -49848051 - THE1C LTR MaLR -73 302 1 441 0 0 0 chr12 94434658 94434707 -49847782 + (TG)n Simple_repeat Simple_repeat 1 49 0 351 0 0 0 chr12 94435521 94435560 -49846929 + (TG)n Simple_repeat Simple_repeat 2 40 0 261 400 45 0 chr12 94435759 94435869 -49846620 + L2 LINE L2 3155 3269 -3 1085 285 40 94 chr12 94436561 94436668 -49845821 + MLT1H LTR MaLR 1 112 -437 3067 69 18 21 chr12 94436668 94437105 -49845384 + L1PA10 LINE L1 5730 6165 -3 1085 285 40 94 chr12 94437105 94437569 -49844920 + MLT1H LTR MaLR 112 541 -8 239 340 89 54 chr12 94437704 94437907 -49844582 - MIR SINE MIR -4 258 49 1027 175 118 0 chr12 94438611 94438874 -49843615 - Charlie5 DNA MER1_type -85 2527 2234 21 0 0 0 chr12 94438886 94438907 -49843582 + AT_rich Low_complexity Low_complexity 1 21 0 287 214 0 0 chr12 94438928 94438984 -49843505 - Charlie5 DNA MER1_type -2549 63 8 220 338 95 7 chr12 94439144 94439292 -49843197 - MIR SINE MIR -4 258 98 387 313 94 25 chr12 94439928 94440088 -49842401 - MIR SINE MIR -86 176 6 207 100 0 0 chr12 94440270 94440300 -49842189 + (GGA)n Simple_repeat Simple_repeat 3 32 0 207 100 0 0 chr12 94441711 94441741 -49840748 + (GGA)n Simple_repeat Simple_repeat 3 32 0 2158 316 72 14 chr12 94441784 94442034 -49840455 - L2 LINE L2 -249 3064 2830 2328 173 26 2 chr12 94442034 94442451 -49840038 + MSTA LTR MaLR 2 428 0 2158 316 72 14 chr12 94442451 94443171 -49839318 - L2 LINE L2 -483 2830 2034 428 332 29 13 chr12 94443976 94444161 -49838328 + MIR SINE MIR 6 191 -69 312 27 0 0 chr12 94444162 94444199 -49838290 + (TG)n Simple_repeat Simple_repeat 2 38 0 1209 160 84 12 chr12 94444828 94445078 -49837411 + L1MD3 LINE L1 7728 7995 0 2191 75 39 0 chr12 94445089 94445371 -49837118 + AluSp SINE Alu 1 293 -20 242 217 76 65 chr12 94445411 94445503 -49836986 + MIR SINE MIR 57 149 -113 8622 116 9 8 chr12 94445535 94446820 -49835669 - HSMAR1 DNA Mariner -1 1286 1 264 77 0 0 chr12 94446829 94446868 -49835621 + (TG)n Simple_repeat Simple_repeat 1 39 0 286 303 26 0 chr12 94446885 94446961 -49835528 - MIR SINE MIR -180 82 5 229 273 57 11 chr12 94447044 94447132 -49835357 + L1ME4a LINE L1 6005 6096 -25 2702 3 0 0 chr12 94447262 94447582 -49834907 + AluYa5 SINE Alu 1 320 0 35 24 0 0 chr12 94447682 94447724 -49834765 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr12 94447780 94447801 -49834688 + AT_rich Low_complexity Low_complexity 1 21 0 2362 244 108 2 chr12 94448432 94449386 -49833103 + L1ME3 LINE L1 5039 6149 -13 608 191 9 0 chr12 94450245 94450355 -49832134 + FRAM SINE Alu 53 163 -13 712 315 85 53 chr12 94450494 94450710 -49831779 + L2 LINE L2 1793 2001 -1313 1939 107 37 4 chr12 94450710 94450980 -49831509 - AluSg SINE Alu -31 279 1 712 315 85 53 chr12 94450980 94451389 -49831100 + L2 LINE L2 2001 2438 -876 2260 97 3 25 chr12 94451922 94452242 -49830247 + AluSp SINE Alu 1 313 0 470 266 58 7 chr12 94452997 94453136 -49829353 - L2 LINE L2 -619 2695 2550 438 236 222 38 chr12 94453159 94453371 -49829118 - L2 LINE L2 -903 2411 2161 200 320 13 53 chr12 94454002 94454077 -49828412 - MER5B DNA MER1_type -30 148 77 403 286 48 14 chr12 94455275 94455422 -49827067 - MIR SINE MIR -18 244 93 385 338 45 13 chr12 94456073 94456227 -49826262 + MIR3 SINE MIR 29 187 -21 213 192 26 39 chr12 94456935 94457013 -49825476 + (TTATA)n Simple_repeat Simple_repeat 1 77 0 1028 217 76 21 chr12 94458172 94458603 -49823886 - MLT1D LTR MaLR -4 501 1 1353 199 22 0 chr12 94458940 94459211 -49823278 + L1MB5 LINE L1 5743 6019 -155 264 192 0 19 chr12 94459234 94459286 -49823203 - MER75 DNA T2_type -463 51 1 599 198 0 0 chr12 94459308 94459424 -49823065 + L1MB5 LINE L1 6051 6166 -8 279 93 0 0 chr12 94459907 94459950 -49822539 + (CA)n Simple_repeat Simple_repeat 2 44 0 231 36 0 0 chr12 94459949 94459977 -49822512 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 231 256 38 53 chr12 94460213 94460346 -49822143 + L1ME LINE L1 5643 5773 -348 352 316 20 116 chr12 94462522 94462823 -49819666 - L2 LINE L2 -23 3249 2978 1917 110 34 3 chr12 94463051 94463343 -49819146 - AluSq SINE Alu -12 301 1 280 296 15 44 chr12 94464046 94464181 -49818308 - MIR SINE MIR -57 205 75 224 242 76 15 chr12 94464212 94464278 -49818211 - L2 LINE L2 -2 3270 3201 2138 106 0 3 chr12 94466664 94466947 -49815542 - AluSx SINE Alu -30 282 1 2525 213 30 6 chr12 94466948 94467454 -49815035 - MER74A LTR ERVL -6 552 35 1727 296 39 39 chr12 94467454 94468309 -49814180 + L1ME1 LINE L1 85 939 -5457 14499 184 24 20 chr12 94468315 94471857 -49810632 - L1MA4A LINE L1 -8 6997 3471 1448 53 0 5 chr12 94471857 94472045 -49810444 - L1PA5 LINE L1 0 6154 5968 14499 184 24 20 chr12 94472045 94473691 -49808798 - L1MA4A LINE L1 -3534 3471 1766 2436 86 0 10 chr12 94473691 94474005 -49808484 - AluY SINE Alu 0 311 1 14499 184 24 20 chr12 94474005 94475040 -49807449 - L1MA4A LINE L1 -5239 1766 737 520 336 20 32 chr12 94475291 94475926 -49806563 + L1ME1 LINE L1 1136 1824 -4572 2985 258 40 21 chr12 94475929 94477059 -49805430 + L1ME1 LINE L1 2698 3848 -2367 582 242 0 0 chr12 94477069 94477189 -49805300 + FAM SINE Alu 1 120 -65 859 234 0 0 chr12 94477215 94477390 -49805099 + FAM SINE Alu 1 175 0 2664 242 34 22 chr12 94477400 94478864 -49803625 + L1ME1 LINE L1 3861 5399 -816 2783 139 2 9 chr12 94478865 94479304 -49803185 + L1PA15 LINE L1 5709 6144 -21 51 31 0 0 chr12 94479307 94479372 -49803117 + AT_rich Low_complexity Low_complexity 1 65 0 2846 245 62 15 chr12 94479372 94480179 -49802310 + L1ME1 LINE L1 5386 6230 -5 1492 147 3 123 chr12 94480185 94480525 -49801964 - AluJb SINE Alu -12 300 2 485 294 78 37 chr12 94481994 94482239 -49800250 - MIR SINE MIR 0 262 8 211 139 47 0 chr12 94482406 94482449 -49800040 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 471 281 31 67 chr12 94483060 94483406 -49799083 + MLT1I LTR MaLR 68 547 -2 256 209 15 60 chr12 94483808 94483875 -49798614 - MIR SINE MIR -114 148 85 1816 197 17 11 chr12 94483890 94484251 -49798238 + MLT1B LTR MaLR 28 390 0 214 228 70 0 chr12 94484409 94484466 -49798023 - MIR SINE MIR -5 257 197 239 343 102 57 chr12 94484524 94484789 -49797700 + L2 LINE L2 2985 3261 -11 709 356 14 0 chr12 94485264 94485559 -49796930 + L2 LINE L2 1711 2009 -1305 730 292 15 53 chr12 94485572 94485836 -49796653 - MLT1K LTR MaLR -14 574 321 342 0 0 0 chr12 94485872 94485910 -49796579 + (CA)n Simple_repeat Simple_repeat 2 39 0 1077 296 86 53 chr12 94486111 94486776 -49795713 + L2 LINE L2 2015 2701 -613 452 299 103 45 chr12 94486765 94486989 -49795500 + L2 LINE L2 2823 3059 -254 * 1933 203 0 16 chr12 94486989 94487358 -49795131 - MLT1A1 LTR MaLR 0 365 3 329 325 94 16 chr12 94487525 94487716 -49794773 + L2 LINE L2 3106 3311 -2 237 277 107 15 chr12 94488564 94488689 -49793800 - MIR SINE MIR -81 127 16 503 300 128 58 chr12 94488762 94489159 -49793330 + L1ME LINE L1 5353 5777 -344 263 294 22 11 chr12 94490993 94491085 -49791404 + MER5A DNA MER1_type 97 189 0 203 116 70 23 chr12 94492146 94492189 -49790300 + T-rich Low_complexity Low_complexity 1 45 0 345 328 17 17 chr12 94492190 94492306 -49790183 + MER5A DNA MER1_type 71 186 -3 199 344 16 48 chr12 94492196 94492321 -49790168 - MER5A DNA MER1_type -65 124 4 * 402 238 67 105 chr12 94494686 94494896 -49787593 + L2 LINE L2 3112 3313 0 206 316 122 0 chr12 94495524 94495622 -49786867 - MIR SINE MIR -71 191 82 402 21 0 0 chr12 94496302 94496349 -49786140 + (TA)n Simple_repeat Simple_repeat 2 48 0 838 307 61 46 chr12 94496457 94496978 -49785511 - L1ME LINE L1 -370 5792 5264 237 339 165 0 chr12 94497623 94497750 -49784739 - MER102a DNA MER1_type -34 296 149 22 56 0 0 chr12 94497799 94497835 -49784654 + AT_rich Low_complexity Low_complexity 1 36 0 252 0 0 0 chr12 94497874 94497902 -49784587 + (CA)n Simple_repeat Simple_repeat 2 29 0 387 0 0 0 chr12 94498205 94498248 -49784241 + (TTA)n Simple_repeat Simple_repeat 3 45 0 3894 9 5 0 chr12 94498248 94498687 -49783802 - L1PA3 LINE L1 -18 6137 5697 13995 31 0 0 chr12 94498687 94500359 -49782130 + L1P LINE L1 3312 4983 -1163 1406 84 5 0 chr12 94500568 94500759 -49781730 + L1PB1 LINE L1 5957 6148 -3 211 345 44 26 chr12 94500766 94500879 -49781610 + MIR3 SINE MIR 40 154 -54 1163 167 17 104 chr12 94501775 94502129 -49780360 + MER33 DNA MER1_type 1 323 -1 215 328 80 8 chr12 94502314 94502439 -49780050 - L2 LINE L2 -937 2377 2244 185 343 64 14 chr12 94502464 94502604 -49779885 + MIR SINE MIR 20 166 -96 * 267 328 137 54 chr12 94502592 94502796 -49779693 - L2 LINE L2 -1 3271 3051 192 40 0 0 chr12 94502976 94503001 -49779488 + (TC)n Simple_repeat Simple_repeat 1 25 0 1543 196 0 0 chr12 94503282 94503537 -49778952 + AluJb SINE Alu 35 289 -23 826 222 72 19 chr12 94504394 94504601 -49777888 + MER58A DNA MER1_type 7 224 0 189 200 0 0 chr12 94505336 94505371 -49777118 - L2 LINE L2 -14 3299 3265 283 223 135 19 chr12 94507923 94508047 -49774442 - MIR SINE MIR -63 145 62 509 90 26 0 chr12 94508261 94508339 -49774150 - MADE1 DNA Mariner 0 80 1 6575 60 35 6 chr12 94508399 94509699 -49772790 + L1PA6 LINE L1 4850 6179 0 617 289 44 6 chr12 94509866 94510046 -49772443 - MIR SINE MIR -58 204 18 526 303 66 5 chr12 94510691 94510902 -49771587 - MIR SINE MIR -11 251 28 204 400 55 9 chr12 94512175 94512285 -49770204 - L2 LINE L2 -37 3235 3121 229 340 11 11 chr12 94512311 94512405 -49770084 + L2 LINE L2 2875 2968 -345 3939 145 11 59 chr12 94512427 94513174 -49769315 - MER50 LTR ERV1 -23 711 1 543 289 98 40 chr12 94513969 94514194 -49768295 + MIR SINE MIR 13 250 -12 760 249 49 0 chr12 94514284 94514469 -49768020 - MIR SINE MIR -65 197 4 29 0 0 0 chr12 94514573 94514602 -49767887 + AT_rich Low_complexity Low_complexity 1 29 0 2196 172 95 18 chr12 94515376 94515999 -49766490 - MER39 LTR ERV1 0 707 1 317 341 70 25 chr12 94516030 94516344 -49766145 + L2 LINE L2 1489 1816 -1498 370 339 92 35 chr12 94516497 94516724 -49765765 + MIR SINE MIR 5 244 -18 238 203 17 51 chr12 94516923 94516982 -49765507 + MLT1K LTR MaLR 147 203 -385 311 332 183 8 chr12 94517020 94517381 -49765108 + MLT1K LTR MaLR 148 571 -17 22 35 0 0 chr12 94519095 94519124 -49763365 + AT_rich Low_complexity Low_complexity 1 29 0 243 179 0 0 chr12 94521020 94521087 -49761402 + (TA)n Simple_repeat Simple_repeat 1 67 0 2230 86 3 13 chr12 94522049 94522363 -49760126 - AluY SINE Alu 0 311 1 957 298 108 36 chr12 94522375 94524865 -49757624 - L1ME3A LINE L1 -286 5884 3141 268 315 0 22 chr12 94525004 94525093 -49757396 + MLT1I LTR MaLR 102 188 -361 306 308 19 0 chr12 94525212 94525319 -49757170 + MLT1I LTR MaLR 275 383 -26 354 264 36 155 chr12 94526575 94526852 -49755637 + MLT1I LTR MaLR 145 388 -21 1731 146 76 34 chr12 94526932 94527289 -49755200 - THE1C LTR MaLR -3 372 1 431 323 77 13 chr12 94527299 94527987 -49754502 - L1ME3A LINE L1 -3149 2997 2266 310 280 33 63 chr12 94528462 94528736 -49753753 - MLT1J2 LTR MaLR -46 363 102 911 136 8 0 chr12 94528860 94528992 -49753497 + AluSg/x SINE Alu 157 289 -23 696 191 67 0 chr12 94529107 94529313 -49753176 - Charlie5 DNA MER1_type 0 2616 2397 1942 170 53 33 chr12 94529313 94529848 -49752641 + MLT2A2 LTR ERVL 1 554 0 651 182 0 0 chr12 94529848 94529960 -49752529 - MER33 DNA MER1_type -261 63 1 907 233 29 0 chr12 94530511 94530717 -49751772 - L1PA16 LINE L1 -16 6150 5939 45 55 0 0 chr12 94531242 94531315 -49751174 + AT_rich Low_complexity Low_complexity 1 73 0 324 300 129 24 chr12 94532304 94532474 -49750015 + MIR SINE MIR 75 262 0 416 101 101 0 chr12 94532734 94532803 -49749686 - L1MC5 LINE L1 -868 7093 7018 1140 224 53 102 chr12 94532806 94533502 -49748987 - L1MC5 LINE L1 -417 7544 6883 775 300 126 23 chr12 94533680 94534070 -49748419 - L1MC4a LINE L1 -903 6905 6476 1953 256 24 14 chr12 94534494 94534807 -49747682 - L1MC4a LINE L1 -1907 5901 5578 3554 158 10 8 chr12 94534807 94535408 -49747081 - MER7C DNA MER2_type 0 602 1 1953 256 24 14 chr12 94535408 94535673 -49746816 - L1MC4a LINE L1 -2230 5578 5317 252 212 0 0 chr12 94535775 94535841 -49746648 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 245 200 0 17 chr12 94535844 94535904 -49746585 - L1MC4 LINE L1 -1326 6716 6658 359 315 48 48 chr12 94535936 94536197 -49746292 - L1MC4a LINE L1 -1017 5129 4866 1661 209 88 51 chr12 94536197 94536684 -49745805 + MLT1D LTR MaLR 1 505 0 359 315 48 48 chr12 94536684 94536939 -49745550 - L1MC4a LINE L1 -1279 4867 4613 2386 93 3 0 chr12 94537216 94537516 -49744973 + AluSp SINE Alu 1 301 -12 1116 329 56 7 chr12 94537526 94537955 -49744534 - MLT1K LTR MaLR -123 465 16 228 232 0 18 chr12 94538869 94538925 -49743564 + MER103 DNA DNA 59 113 -53 42 71 0 0 chr12 94539091 94539175 -49743314 + AT_rich Low_complexity Low_complexity 1 84 0 2913 132 4 2 chr12 94539415 94539871 -49742618 - L1PA15 LINE L1 0 6165 5709 901 261 55 26 chr12 94539991 94540263 -49742226 + MLT1F1 LTR MaLR 288 567 0 363 315 35 7 chr12 94540402 94540545 -49741944 + L2 LINE L2 1938 2084 -1230 480 254 48 16 chr12 94540748 94540874 -49741615 + L2 LINE L2 3184 3313 0 * 823 314 71 41 chr12 94540873 94541411 -49741078 + L2 LINE L2 2201 2754 -560 315 214 67 11 chr12 94541412 94541501 -49740988 - MLT1I LTR MaLR -2 407 314 1812 205 30 96 chr12 94541648 94542189 -49740300 - MLT1D LTR MaLR 0 505 1 265 266 86 55 chr12 94542199 94542327 -49740162 - MLT1J1 LTR MaLR -273 137 5 748 266 24 24 chr12 94543582 94543830 -49738659 + MIR SINE MIR 14 261 -1 326 268 188 14 chr12 94544198 94544336 -49738153 - MER5A DNA MER1_type -2 187 26 1502 203 10 14 chr12 94544850 94545145 -49737344 + AluJb SINE Alu 1 294 -18 225 231 39 19 chr12 94545176 94545228 -49737261 + L3 LINE CR1 1502 1554 -23 306 254 42 34 chr12 94545547 94545665 -49736824 - Charlie8 DNA MER1_type -2288 129 11 216 0 0 0 chr12 94545979 94546003 -49736486 + (T)n Simple_repeat Simple_repeat 1 24 0 540 326 122 33 chr12 94546115 94546801 -49735688 - L2 LINE L2 -24 3289 2558 198 71 0 0 chr12 94546841 94546869 -49735620 + (TG)n Simple_repeat Simple_repeat 1 28 0 671 162 285 0 chr12 94547054 94547233 -49735256 - LTR37B LTR ERV1 0 468 239 355 218 21 145 chr12 94547716 94547909 -49734580 - MER31-int LTR ERV1 -881 4055 3928 22 0 0 0 chr12 94548346 94548368 -49734121 + AT_rich Low_complexity Low_complexity 1 22 0 204 125 0 0 chr12 94549114 94549146 -49733343 + (TA)n Simple_repeat Simple_repeat 1 32 0 24 67 0 0 chr12 94549227 94549272 -49733217 + AT_rich Low_complexity Low_complexity 1 45 0 1331 92 56 0 chr12 94549468 94549663 -49732826 + L1PA10 LINE L1 5952 6157 -11 333 68 0 0 chr12 94549915 94549959 -49732530 + (TA)n Simple_repeat Simple_repeat 2 45 0 1197 261 166 33 chr12 94550083 94550555 -49731934 - MLT1G1 LTR MaLR -42 553 18 490 304 111 9 chr12 94551155 94551372 -49731117 + MIR SINE MIR 12 250 -12 259 209 45 34 chr12 94551413 94551590 -49730899 + (TA)n Simple_repeat Simple_repeat 2 180 0 407 138 28 44 chr12 94551619 94551800 -49730689 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 192 122 78 22 chr12 94551811 94551901 -49730588 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 2243 82 0 0 chr12 94552000 94552270 -49730219 + AluSg SINE Alu 7 276 -34 186 71 0 0 chr12 94552270 94552298 -49730191 + (TCTA)n Simple_repeat Simple_repeat 1 28 0 2272 88 3 23 chr12 94553650 94553958 -49728531 - AluSq SINE Alu -11 302 1 331 382 63 1 chr12 94555486 94555724 -49726765 - L2 LINE L2 -258 3014 2763 482 296 31 58 chr12 94555807 94556067 -49726422 + MLT1J LTR MaLR 164 416 -95 503 269 162 54 chr12 94556225 94556559 -49725930 - MLT1J LTR MaLR -35 476 107 207 0 0 0 chr12 94558255 94558278 -49724211 + (A)n Simple_repeat Simple_repeat 1 23 0 208 147 0 0 chr12 94559627 94559661 -49722828 + (TG)n Simple_repeat Simple_repeat 1 34 0 264 30 0 0 chr12 94560695 94560728 -49721761 + (TG)n Simple_repeat Simple_repeat 2 34 0 629 259 53 21 chr12 94561006 94561195 -49721294 + MER63A DNA MER1_type 16 210 0 621 296 63 50 chr12 94562348 94562810 -49719679 - L1ME LINE L1 -448 5722 5255 1969 130 47 7 chr12 94563037 94563337 -49719152 + AluSx SINE Alu 1 312 0 230 338 15 23 chr12 94563748 94563881 -49718608 - L1ME LINE L1 -460 5661 5530 232 186 0 23 chr12 94563984 94564027 -49718462 - MER20B DNA MER1_type -627 156 115 241 331 99 0 chr12 94564167 94564288 -49718201 - L2 LINE L2 -17 3296 3164 21 36 0 0 chr12 94564354 94564382 -49718107 + AT_rich Low_complexity Low_complexity 1 28 0 412 299 52 32 chr12 94566549 94566703 -49715786 - MIR SINE MIR -77 185 29 291 319 34 0 chr12 94566854 94566973 -49715516 - MIR SINE MIR -65 143 21 262 262 107 12 chr12 94567093 94567177 -49715312 + L2 LINE L2 2950 3041 -231 864 143 60 22 chr12 94567217 94567399 -49715090 - MER53 DNA DNA 0 189 1 22 35 0 0 chr12 94567475 94567504 -49714985 + AT_rich Low_complexity Low_complexity 1 29 0 517 117 62 14 chr12 94567583 94567728 -49714761 + GA-rich Low_complexity Low_complexity 4 155 0 267 103 0 0 chr12 94567724 94567763 -49714726 + (GGGGA)n Simple_repeat Simple_repeat 3 41 0 * 2127 155 17 8 chr12 94568106 94568468 -49714021 - MLT1A1 LTR MaLR 0 365 1 214 281 31 0 chr12 94568779 94568843 -49713646 + (CATA)n Simple_repeat Simple_repeat 3 68 0 350 206 0 14 chr12 94568843 94568916 -49713573 + LTR40b LTR ERVL 384 455 -7 252 283 10 61 chr12 94569607 94569706 -49712783 + MIR3 SINE MIR 78 171 -37 298 219 27 0 chr12 94570317 94570390 -49712099 - MER103 DNA DNA -49 117 43 1170 256 165 23 chr12 94570475 94570917 -49711572 - MLT1D LTR MaLR 0 505 1 581 323 52 49 chr12 94570963 94571307 -49711182 - L2 LINE L2 -1 3271 2927 219 290 0 0 chr12 94571326 94571388 -49711101 + MIR SINE MIR 175 236 -26 688 281 70 36 chr12 94572080 94572382 -49710107 + L2 LINE L2 3002 3313 0 605 285 184 31 chr12 94573352 94573797 -49708692 + L3 LINE CR1 434 946 -631 262 366 114 11 chr12 94573988 94574163 -49708326 + L3 LINE CR1 1374 1566 -11 261 291 43 47 chr12 94574281 94574442 -49708047 + MIR SINE MIR 3 161 -63 228 122 0 0 chr12 94574742 94574783 -49707706 + (GA)n Simple_repeat Simple_repeat 2 42 0 345 274 73 0 chr12 94575418 94575542 -49706947 - MIR SINE MIR -39 223 91 2119 181 57 61 chr12 94575738 94576279 -49706210 + L1MB5 LINE L1 5626 6164 -10 1920 134 10 0 chr12 94576364 94576654 -49705835 - AluSx SINE Alu -18 294 2 621 326 47 5 chr12 94576999 94577214 -49705275 + MIR SINE MIR 20 243 -19 290 239 56 21 chr12 94577504 94577646 -49704843 + L1ME4a LINE L1 5974 6120 -1 367 288 109 33 chr12 94578052 94578326 -49704163 + L1MC4a LINE L1 5592 5886 -1922 226 241 0 0 chr12 94578367 94578425 -49704064 + (TA)n Simple_repeat Simple_repeat 2 59 0 355 324 10 10 chr12 94578653 94578755 -49703734 - L2 LINE L2 -3 3269 3168 389 361 36 0 chr12 94579773 94579939 -49702550 + L1ME LINE L1 5610 5781 -389 1838 146 14 7 chr12 94580270 94580565 -49701924 + AluSx SINE Alu 1 297 -15 715 288 39 55 chr12 94580676 94581165 -49701324 + L1ME4a LINE L1 5470 5950 -212 324 299 150 0 chr12 94582207 94582334 -49700155 + MIR SINE MIR 8 153 -109 238 354 102 53 chr12 94582468 94582753 -49699736 - MLT1K LTR MaLR -149 439 141 326 326 90 39 chr12 94583589 94583767 -49698722 - MER5A DNA MER1_type 0 189 3 357 145 0 0 chr12 94583787 94583849 -49698640 + (TA)n Simple_repeat Simple_repeat 2 63 0 3045 151 4 0 chr12 94583850 94584354 -49698135 - L1PA16 LINE L1 -27 6139 5634 469 148 0 0 chr12 94584351 94584432 -49698057 - L1PA16 LINE L1 -1571 4575 4495 * 1842 187 0 10 chr12 94584535 94584845 -49697644 - AluJb SINE Alu -5 307 1 315 268 191 6 chr12 94585328 94585485 -49697004 + L1ME4a LINE L1 5935 6120 -1 222 118 0 0 chr12 94586083 94586117 -49696372 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 2174 98 0 0 chr12 94586151 94586427 -49696062 - AluSx SINE Alu -36 276 1 225 94 0 0 chr12 94586618 94586650 -49695839 + (CACCAT)n Simple_repeat Simple_repeat 6 37 0 3009 133 8 2 chr12 94587262 94587744 -49694745 + MER31A LTR ERV1 1 485 0 183 413 18 0 chr12 94588243 94588352 -49694137 - L2 LINE L2 -214 3058 2948 1421 93 28 0 chr12 94588533 94588747 -49693742 + L1MA2 LINE L1 6076 6295 -9 1506 180 93 42 chr12 94589749 94590105 -49692384 + MLT1A2 LTR MaLR 1 374 0 300 258 120 8 chr12 94590187 94590338 -49692151 + MIR SINE MIR 32 228 -34 289 340 109 37 chr12 94591391 94591622 -49690867 - L2 LINE L2 -1049 2265 1995 1780 175 0 29 chr12 94591622 94591930 -49690559 + AluJb SINE Alu 1 299 -13 289 340 109 37 chr12 94591930 94592075 -49690414 - L2 LINE L2 -1319 1995 1862 240 361 17 17 chr12 94593115 94593234 -49689255 + L3 LINE CR1 984 1102 -475 4977 107 13 14 chr12 94593312 94594108 -49688381 + L1PA10 LINE L1 5371 6165 -3 21 0 0 0 chr12 94594109 94594130 -49688359 + AT_rich Low_complexity Low_complexity 1 21 0 1698 211 37 60 chr12 94594628 94595145 -49687344 + MLT1D LTR MaLR 1 505 0 309 284 75 64 chr12 94595262 94595467 -49687022 - MIR3 SINE MIR -57 205 3 301 270 68 74 chr12 94595740 94595888 -49686601 + MIR SINE MIR 86 232 -30 24 53 0 0 chr12 94596666 94596704 -49685785 + AT_rich Low_complexity Low_complexity 1 38 0 273 307 148 52 chr12 94597031 94597477 -49685012 + L2 LINE L2 2305 2793 -521 341 44 0 0 chr12 94597486 94597531 -49684958 + MADE1 DNA Mariner 1 45 -35 315 0 0 0 chr12 94597556 94597591 -49684898 + (A)n Simple_repeat Simple_repeat 1 35 0 310 238 98 42 chr12 94597940 94598083 -49684406 - MIR SINE MIR -101 161 11 272 364 9 9 chr12 94598212 94598322 -49684167 + MLT1K LTR MaLR 69 178 -410 1370 276 92 71 chr12 94598519 94598969 -49683520 + MLT2F LTR ERVL 1 440 -223 396 0 0 0 chr12 94598969 94599013 -49683476 + (TA)n Simple_repeat Simple_repeat 2 45 0 1370 276 92 71 chr12 94599013 94599150 -49683339 + MLT2F LTR ERVL 440 606 -57 243 0 0 0 chr12 94599150 94599177 -49683312 + (TG)n Simple_repeat Simple_repeat 1 27 0 1370 276 92 71 chr12 94599177 94599237 -49683252 + MLT2F LTR ERVL 606 663 0 264 151 75 0 chr12 94599303 94599356 -49683133 + MLT1K LTR MaLR 530 586 -2 300 330 50 0 chr12 94599392 94599492 -49682997 + L2 LINE L2 3204 3308 -5 1517 204 37 73 chr12 94600167 94600686 -49681803 + MLT1D LTR MaLR 4 503 -2 521 306 119 14 chr12 94601237 94601456 -49681033 + MIR SINE MIR 20 261 -1 523 271 8 23 chr12 94601696 94601825 -49680664 + MIR SINE MIR 19 145 -117 430 257 106 9 chr12 94601825 94602051 -49680438 + L1ME3A LINE L1 5291 5538 -626 360 339 92 0 chr12 94602209 94602339 -49680150 + MER115 DNA AcHobo 228 369 -324 1776 238 55 37 chr12 94602440 94602553 -49679936 + L1ME3A LINE L1 5552 5662 -508 1815 101 40 4 chr12 94602553 94602851 -49679638 + AluSq SINE Alu 34 340 0 1776 238 55 37 chr12 94602851 94603302 -49679187 + L1ME3A LINE L1 5662 6128 -42 264 383 78 0 chr12 94603489 94603630 -49678859 + L2 LINE L2 3121 3272 0 202 304 0 0 chr12 94603657 94603713 -49678776 + CT-rich Low_complexity Low_complexity 1 56 0 490 315 162 24 chr12 94604226 94604677 -49677812 + L1ME4a LINE L1 5636 6028 -93 246 303 98 23 chr12 94604759 94604891 -49677598 + MIR SINE MIR 88 229 -33 313 241 0 24 chr12 94604905 94604988 -49677501 - MLT1H LTR MaLR 0 549 469 488 283 51 102 chr12 94604997 94605268 -49677221 - MLT1H LTR MaLR -194 355 107 455 277 0 9 chr12 94605268 94605380 -49677109 + MER81 DNA DNA 2 112 -2 488 283 51 102 chr12 94605380 94605482 -49677007 - MLT1H LTR MaLR -442 107 1 27 0 0 0 chr12 94606197 94606224 -49676265 + AT_rich Low_complexity Low_complexity 1 27 0 257 204 41 0 chr12 94607646 94607695 -49674794 - MIR SINE MIR -4 258 208 300 27 0 0 chr12 94657736 94657773 -49624716 + (TTA)n Simple_repeat Simple_repeat 1 37 0 216 0 0 0 chr12 94658230 94658254 -49624235 + (A)n Simple_repeat Simple_repeat 1 24 0 446 286 30 8 chr12 94659269 94659402 -49623087 + MER3 DNA MER1_type 16 151 -58 242 79 0 79 chr12 94659412 94659475 -49623014 - L1MA7 LINE L1 0 6291 6234 358 191 0 24 chr12 94659477 94659561 -49622928 + MER3 DNA MER1_type 128 209 0 458 299 28 64 chr12 94659887 94660138 -49622351 - L1MC/D LINE L1 -2189 5619 5378 251 344 43 32 chr12 94660402 94660588 -49621901 + MER5A DNA MER1_type 1 188 -1 254 309 55 42 chr12 94661014 94661179 -49621310 + MIR SINE MIR 46 212 -50 2059 50 8 0 chr12 94661517 94661779 -49620710 + L1PA5 LINE L1 5890 6153 -1 524 275 39 16 chr12 94661840 94662022 -49620467 - MARNA DNA Mariner -254 332 147 739 339 59 79 chr12 94662022 94663189 -49619300 + L2 LINE L2 1178 2321 -993 27 49 0 0 chr12 94663331 94663372 -49619117 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr12 94663509 94663545 -49618944 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr12 94663776 94663806 -49618683 + AT_rich Low_complexity Low_complexity 1 30 0 188 300 17 0 chr12 94663957 94664017 -49618472 + L2 LINE L2 3134 3194 -78 216 0 0 0 chr12 94664017 94664041 -49618448 + (T)n Simple_repeat Simple_repeat 1 24 0 286 349 160 0 chr12 94664163 94664338 -49618151 + MIR SINE MIR 44 246 -16 28485 32 1 0 chr12 94665149 94669369 -49613120 - L1PA4 LINE L1 -4 6151 1928 4683 55 5 0 chr12 94669367 94669962 -49612527 + L1PA4 LINE L1 1327 1924 -4222 * 453 298 68 52 chr12 94670164 94670416 -49612073 - MIR SINE MIR -6 256 1 256 140 40 0 chr12 94671291 94671341 -49611148 + MADE1 DNA Mariner 8 59 -21 201 171 0 0 chr12 94671707 94671742 -49610747 + (TA)n Simple_repeat Simple_repeat 2 36 0 305 298 225 7 chr12 94671980 94672131 -49610358 + MIR SINE MIR 1 184 -78 408 304 62 31 chr12 94672215 94672439 -49610050 - MIR SINE MIR -28 234 4 257 254 0 0 chr12 94672671 94672738 -49609751 - L1PB4 LINE L1 -1 6212 6146 1618 103 53 144 chr12 94672738 94673093 -49609396 + AluSx SINE Alu 1 326 0 8366 232 81 39 chr12 94673101 94676163 -49606326 - L1PB4 LINE L1 -111 6102 3168 370 135 0 0 chr12 94676163 94676215 -49606274 - U2 snRNA snRNA -136 52 1 8366 232 81 39 chr12 94676215 94677854 -49604635 - L1PB4 LINE L1 -3045 3168 952 275 0 29 0 chr12 94677854 94677889 -49604600 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 8366 232 81 39 chr12 94677889 94678514 -49603975 - L1PB4 LINE L1 -5261 952 354 514 345 20 37 chr12 94678622 94678918 -49603571 - L1PB4 LINE L1 -5839 365 75 2439 51 38 0 chr12 94679516 94679809 -49602680 + AluY SINE Alu 1 304 -7 294 365 125 10 chr12 94680962 94681250 -49601239 - LTR33A LTR ERVL -113 410 90 763 311 90 25 chr12 94681264 94681663 -49600826 - LTR16B LTR ERVL -5 459 35 270 408 32 0 chr12 94682039 94682196 -49600293 - MIR3 SINE MIR -10 198 37 2182 186 40 13 chr12 94682320 94682767 -49599722 + LOR1b LTR ERV1 1 459 -2 2516 179 23 7 chr12 94682770 94683212 -49599277 + LOR1b-int LTR ERV1 2 450 -7670 236 205 0 0 chr12 94683288 94683327 -49599162 + 5S rRNA rRNA 1 39 -82 6283 132 42 26 chr12 94683357 94684537 -49597952 + LOR1b-int LTR ERV1 521 1718 -6402 3599 189 37 61 chr12 94684533 94685614 -49596875 + LOR1b-int LTR ERV1 3226 4280 -2318 * 1308 138 0 14 chr12 94685614 94685824 -49596665 + AluSg/x SINE Alu 101 307 -3 21259 139 53 42 chr12 94685828 94687571 -49594918 + LOR1b-int LTR ERV1 4167 5888 -2232 2141 122 0 0 chr12 94687571 94687857 -49594632 - AluSx SINE Alu -24 288 3 21259 139 53 42 chr12 94687857 94690021 -49592468 + LOR1b-int LTR ERV1 5888 8120 0 2397 169 33 7 chr12 94690021 94690470 -49592019 + LOR1b LTR ERV1 1 461 0 1762 191 7 0 chr12 94690632 94690920 -49591569 + AluJb SINE Alu 4 293 -19 2615 30 0 3 chr12 94691688 94691990 -49590499 + AluY SINE Alu 1 301 -10 257 135 0 0 chr12 94692374 94692411 -49590078 - MSTA LTR MaLR 0 428 392 1049 297 59 23 chr12 94693218 94693609 -49588880 - MLT1I LTR MaLR -4 405 1 318 196 49 9 chr12 94694153 94694260 -49588229 + HAL1b LINE L1 1243 1348 0 1652 180 73 44 chr12 94694366 94694749 -49587740 + MSTD LTR MaLR 3 396 0 2355 244 19 2 chr12 94694751 94695283 -49587206 + MSTD-int LTR MaLR 2 542 -1193 1180 92 0 0 chr12 94695284 94695436 -49587053 + AluY SINE Alu 152 303 -8 2995 260 97 43 chr12 94695438 94696339 -49586150 + MSTD-int LTR MaLR 548 1496 -239 1239 157 160 21 chr12 94696344 94696631 -49585858 + MER44D DNA MER2_type 5 601 -8 1191 147 80 9 chr12 94696638 94696863 -49585626 + MSTD-int LTR MaLR 1489 1729 -6 2023 174 26 18 chr12 94696868 94697259 -49585230 + MSTD LTR MaLR 1 394 -2 803 121 53 0 chr12 94697834 94697966 -49584523 + MER85 DNA T2_type 1 139 0 269 243 29 14 chr12 94698222 94698292 -49584197 - L2 LINE L2 -1 3312 3242 537 186 0 0 chr12 94698292 94698378 -49584111 + MER7A DNA MER2_type 1 84 -262 225 178 0 0 chr12 94698407 94698452 -49584037 + (TA)n Simple_repeat Simple_repeat 2 46 0 234 211 19 39 chr12 94698462 94698514 -49583975 + MSTD LTR MaLR 158 208 -188 462 143 0 0 chr12 94698514 94698591 -49583898 + (TA)n Simple_repeat Simple_repeat 1 77 0 1341 146 5 23 chr12 94698604 94698824 -49583665 + MER7A DNA MER2_type 112 327 -10 1060 298 108 65 chr12 94698825 94699860 -49582629 - L2 LINE L2 -71 3242 2148 14218 173 15 30 chr12 94699897 94703318 -49579171 - HERVH LTR ERV1 -3244 3285 590 674 109 30 0 chr12 94703300 94703401 -49579088 - HERVH LTR ERV1 -7609 104 1 * 2445 82 87 62 chr12 94703403 94703840 -49578649 - LTR7 LTR ERV1 -2 448 1 188 270 79 0 chr12 94705532 94705595 -49576894 - MIR SINE MIR -9 253 186 186 366 41 57 chr12 94705650 94705773 -49576716 + L2 LINE L2 3145 3265 -7 265 276 76 54 chr12 94706150 94706335 -49576154 + L2 LINE L2 2778 2966 -348 6709 112 25 7 chr12 94706393 94707541 -49574948 + L1MA3 LINE L1 5138 6305 0 225 154 0 0 chr12 94709101 94709140 -49573349 + T-rich Low_complexity Low_complexity 1 39 0 797 169 61 0 chr12 94709850 94709998 -49572491 + MSTB1 LTR MaLR 259 415 -17 4194 174 20 1 chr12 94710022 94710718 -49571771 + MER44D DNA MER2_type 16 596 -9 266 370 30 22 chr12 94710788 94710923 -49571566 + L2 LINE L2 3137 3272 0 968 201 49 31 chr12 94711015 94711303 -49571186 - MER33 DNA MER1_type 0 324 32 23 33 0 0 chr12 94711460 94711490 -49570999 + AT_rich Low_complexity Low_complexity 1 30 0 1012 181 39 39 chr12 94711845 94712050 -49570439 + AluJb SINE Alu 87 291 -21 234 207 0 35 chr12 94712179 94712237 -49570252 - MER81 DNA DNA -16 98 43 30 59 0 0 chr12 94712292 94712343 -49570146 + AT_rich Low_complexity Low_complexity 1 51 0 2586 90 13 24 chr12 94712702 94713081 -49569408 - THE1C LTR MaLR 0 375 1 268 207 41 25 chr12 94713807 94713928 -49568561 + GA-rich Low_complexity Low_complexity 5 127 0 517 236 24 8 chr12 94714475 94714602 -49567887 + MER105 DNA DNA 28 156 -48 1324 124 5 5 chr12 94715171 94715365 -49567124 - MER1B DNA MER1_type -2 337 144 447 174 0 0 chr12 94715365 94715434 -49567055 - MER1B DNA MER1_type -268 69 1 606 272 154 62 chr12 94715804 94716004 -49566485 + MLT1J LTR MaLR 9 189 -322 1283 207 113 26 chr12 94716004 94716346 -49566143 + MLT2D LTR ERVL 1 381 -33 563 0 15 0 chr12 94716346 94716413 -49566076 + (CA)n Simple_repeat Simple_repeat 2 69 0 1283 207 113 26 chr12 94716413 94716451 -49566038 + MLT2D LTR ERVL 381 414 0 606 272 154 62 chr12 94716451 94716673 -49565816 + MLT1J LTR MaLR 189 470 -41 280 372 45 26 chr12 94716693 94716849 -49565640 - L2 LINE L2 -535 2779 2621 3399 230 90 12 chr12 94717120 94718409 -49564080 - Charlie2a DNA MER1_type -8 2854 1466 778 253 36 69 chr12 94718422 94718782 -49563707 - L1MEc LINE L1 -5475 921 574 531 267 24 6 chr12 94718818 94718983 -49563506 - L1MEc LINE L1 -6137 259 92 628 271 57 5 chr12 94719052 94719262 -49563227 - Charlie2 DNA MER1_type -2366 496 276 344 237 158 98 chr12 94719320 94719586 -49562903 - LTR41 LTR ERVL -7 766 485 372 221 0 12 chr12 94719760 94719846 -49562643 - LTR41 LTR ERVL -672 101 17 273 171 19 114 chr12 94719904 94720009 -49562480 - Charlie2 DNA MER1_type -2662 200 106 * 1178 178 53 0 chr12 94720008 94720216 -49562273 + MSTB LTR MaLR 208 426 0 266 336 0 64 chr12 94720230 94720355 -49562134 + L2 LINE L2 2987 3103 -169 21 36 0 0 chr12 94720469 94720497 -49561992 + AT_rich Low_complexity Low_complexity 1 28 0 712 199 34 14 chr12 94720809 94720955 -49561534 - MER58B DNA MER1_type 0 341 193 591 300 56 33 chr12 94721074 94721326 -49561163 - MLT1H LTR MaLR -249 300 1 222 37 0 0 chr12 94721452 94721488 -49561001 + (TC)n Simple_repeat Simple_repeat 1 63 0 222 37 0 0 chr12 94721488 94721515 -49560974 + (TC)n Simple_repeat Simple_repeat 2 28 0 24 0 0 29 chr12 94721651 94721662 -49560827 + AT_rich Low_complexity Low_complexity 1 11 -23 1631 160 46 7 chr12 94721662 94721943 -49560546 - AluJb SINE Alu -20 292 1 24 0 0 29 chr12 94721943 94721966 -49560523 + AT_rich Low_complexity Low_complexity 11 34 0 407 301 73 34 chr12 94721989 94722195 -49560294 - MIR SINE MIR 0 262 49 251 231 10 96 chr12 94722342 94722446 -49560043 + L1MC5 LINE L1 6629 6723 -1238 * 7337 44 0 1 chr12 94722444 94723353 -49559136 - L1PA6 LINE L1 -1489 4657 3750 7045 55 8 0 chr12 94723354 94724869 -49557620 + L1PA6 LINE L1 4657 6154 0 649 209 59 121 chr12 94724869 94725102 -49557387 + L1MC5 LINE L1 6710 6914 -1047 1596 172 0 28 chr12 94725102 94725228 -49557261 + AluJb SINE Alu 1 129 -182 369 0 0 0 chr12 94725228 94725269 -49557220 + (CA)n Simple_repeat Simple_repeat 2 42 0 1596 172 0 28 chr12 94725269 94725461 -49557028 + AluJb SINE Alu 129 311 0 649 209 59 121 chr12 94725461 94725611 -49556878 + L1MC5 LINE L1 6914 7072 -889 830 235 77 54 chr12 94725666 94726058 -49556431 + L1MC5 LINE L1 7085 7485 -476 1869 212 23 10 chr12 94726058 94726450 -49556039 + L1MC1 LINE L1 21 417 -6009 431 229 0 0 chr12 94726451 94726534 -49555955 + L1MC1 LINE L1 513 595 -5831 * 3485 188 19 15 chr12 94726522 94727536 -49554953 + L1MC1 LINE L1 5122 6129 -484 552 185 28 0 chr12 94727536 94727630 -49554859 + L1MC1 LINE L1 6501 6611 -2 392 259 36 14 chr12 94727688 94727827 -49554662 + L1MC5 LINE L1 7772 7913 -48 1607 184 11 0 chr12 94728106 94728412 -49554077 + AluJo SINE Alu 4 312 0 211 365 104 0 chr12 94728557 94728653 -49553836 + L2 LINE L2 3149 3254 -18 189 0 0 0 chr12 94730312 94730333 -49552156 + (TAA)n Simple_repeat Simple_repeat 3 23 0 983 153 13 0 chr12 94730333 94730483 -49552006 - AluSg/x SINE Alu -24 288 137 34 42 0 0 chr12 94730536 94730584 -49551905 + AT_rich Low_complexity Low_complexity 1 48 0 1113 231 145 12 chr12 94730679 94731177 -49551312 + L1ME1 LINE L1 1965 2528 -4079 393 230 11 0 chr12 94731228 94731315 -49551174 - Tigger7 DNA MER2_type 0 2487 2400 * 2902 175 64 7 chr12 94731310 94731859 -49550630 - Tigger7 DNA MER2_type -151 582 3 1182 197 94 82 chr12 94731859 94732251 -49550238 + MLT1C LTR MaLR 33 352 -38 1021 204 61 55 chr12 94732251 94732580 -49549909 + L1ME1 LINE L1 2841 3171 -3255 833 240 14 0 chr12 94732575 94732792 -49549697 + L1ME1 LINE L1 4069 4288 -2138 * 1018 218 84 34 chr12 94732792 94733231 -49549258 - MLT1D LTR MaLR -1 504 1 4230 245 29 19 chr12 94733231 94734954 -49547535 + L1ME1 LINE L1 4283 6028 -418 1253 236 44 115 chr12 94734956 94735592 -49546897 + LTR38B LTR ERV1 1 591 -19 1033 286 29 24 chr12 94735612 94736025 -49546464 + L1ME1 LINE L1 6027 6441 -5 489 209 115 119 chr12 94737199 94737477 -49545012 + MER101B LTR ERV1 1 277 -293 2638 184 10 6 chr12 94739538 94740022 -49542467 + MER66B LTR ERV1 1 486 0 340 380 107 39 chr12 94740267 94740931 -49541558 + L2 LINE L2 595 1303 -2011 2592 112 3 8 chr12 94742397 94742762 -49539727 + THE1B LTR MaLR 1 363 -1 392 321 100 21 chr12 94742835 94743075 -49539414 + MIR SINE MIR 4 262 0 1577 148 170 16 chr12 94743376 94743747 -49538742 + MSTA LTR MaLR 1 428 0 314 276 40 104 chr12 94743793 94744090 -49538399 - L1MEd LINE L1 -4999 1120 843 2040 146 138 5 chr12 94744425 94744803 -49537686 + MSTA LTR MaLR 1 428 0 510 146 12 0 chr12 94744805 94744887 -49537602 + MSTA-int LTR MaLR 3 85 -1495 * 1315 141 14 5 chr12 94744884 94745097 -49537392 + MSTA-int LTR MaLR 1264 1478 -173 394 261 84 65 chr12 94745655 94745870 -49536619 - MIR SINE MIR -40 222 4 342 0 0 0 chr12 94746818 94746856 -49535633 + (CA)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr12 94747758 94747788 -49534701 + AT_rich Low_complexity Low_complexity 1 30 0 437 339 81 25 chr12 94748057 94748379 -49534110 + L1ME4a LINE L1 5677 6016 -105 28 48 0 0 chr12 94748448 94748490 -49533999 + AT_rich Low_complexity Low_complexity 1 42 0 1520 260 24 28 chr12 94748741 94749198 -49533291 - MLT1C LTR MaLR -4 463 9 2275 113 129 5 chr12 94749338 94749719 -49532770 + MSTA LTR MaLR 1 428 0 1032 40 0 0 chr12 94750114 94750240 -49532249 - L1PA5 LINE L1 -6 6148 6023 3224 103 13 0 chr12 94750319 94750766 -49531723 - MLT2A2 LTR ERVL 0 453 1 313 316 40 17 chr12 94750849 94751026 -49531463 + L1MEd LINE L1 13 193 -5926 1382 189 70 14 chr12 94751101 94751386 -49531103 - AluJb SINE Alu -1 311 11 587 254 209 20 chr12 94751398 94751756 -49530733 - L1MC4a LINE L1 -1639 6169 5744 456 299 112 35 chr12 94751791 94751988 -49530501 - L1MC4a LINE L1 -2130 5678 5467 302 294 9 64 chr12 94751989 94752098 -49530391 - L1MC4a LINE L1 -2410 5398 5296 2889 158 0 73 chr12 94752148 94752712 -49529777 - MER1A DNA MER1_type 0 527 5 30 27 0 0 chr12 94753466 94753503 -49528986 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr12 94753528 94753551 -49528938 + AT_rich Low_complexity Low_complexity 1 23 0 619 285 93 61 chr12 94753597 94753909 -49528580 - MLT1I LTR MaLR -6 403 82 516 267 113 79 chr12 94754276 94754618 -49527871 + L1M4 LINE L1 3561 3890 -2256 1980 116 14 3 chr12 94754618 94754911 -49527578 - AluSq SINE Alu -17 296 1 516 267 113 79 chr12 94754911 94755046 -49527443 + L1M4 LINE L1 3890 4019 -2127 5872 201 8 8 chr12 94755046 94757060 -49525429 + L1PA15 LINE L1 4125 6146 -19 516 267 113 79 chr12 94757060 94757357 -49525132 + L1M4 LINE L1 4019 4363 -1783 290 296 87 20 chr12 94757371 94757624 -49524865 + L1M4 LINE L1 4744 5013 -1133 21 57 0 0 chr12 94757626 94757661 -49524828 + AT_rich Low_complexity Low_complexity 1 35 0 4918 151 10 27 chr12 94757905 94758802 -49523687 - L1MB2 LINE L1 0 6171 5290 30 59 0 0 chr12 94759550 94759601 -49522888 + AT_rich Low_complexity Low_complexity 1 51 0 242 327 69 35 chr12 94760461 94760721 -49521768 + L1M4 LINE L1 3661 3929 -2217 423 325 83 32 chr12 94760916 94761193 -49521296 - ERVL LTR ERVL -2234 3530 3240 635 145 0 8 chr12 94762309 94762426 -49520063 + (GGAA)n Simple_repeat Simple_repeat 3 118 0 188 320 74 41 chr12 94762443 94762565 -49519924 + L2 LINE L2 3177 3302 -11 233 218 18 18 chr12 94763218 94763273 -49519216 - L2 LINE L2 -4 3268 3214 442 304 24 0 chr12 94763338 94763463 -49519026 - L2 LINE L2 0 3272 3145 1863 155 34 47 chr12 94763682 94764062 -49518427 + THE1C LTR MaLR 1 375 0 267 103 0 0 chr12 94764357 94764396 -49518093 + (TC)n Simple_repeat Simple_repeat 2 40 0 360 300 52 24 chr12 94765692 94765902 -49516587 + L1MA9 LINE L1 6059 6274 -38 2279 223 4 41 chr12 94767000 94767534 -49514955 - MLT2B2 LTR ERVL 0 515 2 689 240 17 69 chr12 94767728 94767903 -49514586 + MER8 DNA MER2_type 7 172 -67 631 290 61 4 chr12 94768671 94768916 -49513573 + MIR SINE MIR 4 262 0 331 277 86 69 chr12 94769594 94769716 -49512773 + L1ME4a LINE L1 5717 5835 -286 183 42 0 0 chr12 94769716 94769740 -49512749 + (TATATG)n Simple_repeat Simple_repeat 6 29 0 331 277 86 69 chr12 94769740 94769967 -49512522 + L1ME4a LINE L1 5835 6072 -49 407 280 112 0 chr12 94770534 94770641 -49511848 + L2 LINE L2 3151 3269 -3 1262 215 92 125 chr12 94772534 94773055 -49509434 - MLT1F1 LTR MaLR 0 567 64 2068 156 20 0 chr12 94773741 94774099 -49508390 + MER47A DNA MER2_type 1 365 -1 2452 75 3 0 chr12 94774270 94774575 -49507914 + AluSg SINE Alu 3 308 -2 829 159 141 83 chr12 94775099 94775248 -49507241 + L1MA9 LINE L1 6015 6154 -158 216 111 0 0 chr12 94775248 94775284 -49507205 + (CA)n Simple_repeat Simple_repeat 1 36 0 829 159 141 83 chr12 94775284 94775410 -49507079 + L1MA9 LINE L1 6154 6306 -6 367 250 85 81 chr12 94775430 94775551 -49506938 - L1ME4a LINE L1 -157 5964 5840 2182 105 0 3 chr12 94775551 94775845 -49506644 - AluSq SINE Alu -14 299 7 367 250 85 81 chr12 94775845 94775959 -49506530 - L1ME4a LINE L1 -281 5840 5728 6246 211 13 1 chr12 94776278 94777678 -49504811 - L1PB1 LINE L1 -859 5287 3872 5337 113 13 19 chr12 94777678 94778528 -49503961 + L1PB1 LINE L1 5306 6150 -1 995 63 0 0 chr12 94779584 94779710 -49502779 + AluY SINE Alu 173 298 -13 517 253 125 50 chr12 94780967 94781327 -49501162 - L1ME4a LINE L1 -1 6120 5734 2928 111 5 0 chr12 94781335 94781760 -49500729 - L1PA14 LINE L1 -6 6155 5729 2304 225 140 38 chr12 94782295 94782835 -49499654 + L1ME1 LINE L1 5218 5877 -289 2186 75 51 3 chr12 94782835 94783128 -49499361 + AluSx SINE Alu 1 307 -5 2304 225 140 38 chr12 94783128 94783447 -49499042 + L1ME1 LINE L1 5877 6162 -4 312 411 83 13 chr12 94783559 94784019 -49498470 - L2 LINE L2 -181 3091 2595 3552 186 114 145 chr12 94784046 94784430 -49498059 - L1MD3 LINE L1 -10 7985 7591 1721 159 7 36 chr12 94784430 94784738 -49497751 - AluJb SINE Alu -1 311 13 3552 186 114 145 chr12 94784738 94784955 -49497534 - L1MD3 LINE L1 -404 7591 7369 396 263 51 17 chr12 94784955 94785073 -49497416 - MLT1F1 LTR MaLR -445 122 1 3552 186 114 145 chr12 94785073 94785905 -49496584 - L1MD3 LINE L1 -626 7369 6482 700 230 91 10 chr12 94785896 94786105 -49496384 - L1MD3 LINE L1 -1901 6094 5869 * 227 91 0 23 chr12 94786105 94786149 -49496340 + (TAA)n Simple_repeat Simple_repeat 2 44 0 25 31 0 0 chr12 94786149 94786181 -49496308 + AT_rich Low_complexity Low_complexity 1 32 0 284 373 119 24 chr12 94786477 94786938 -49495551 - L2 LINE L2 -811 2503 1999 230 365 86 25 chr12 94787066 94787310 -49495179 - L2 LINE L2 -1310 2004 1746 403 322 43 14 chr12 94787643 94787851 -49494638 + MIR SINE MIR 35 248 -14 5843 117 6 6 chr12 94788908 94789990 -49492499 - L1PA13 LINE L1 -2 6161 5072 851 150 39 26 chr12 94790009 94790162 -49492327 + L1P LINE L1 4118 4272 -1874 * 5193 170 3 9 chr12 94790137 94791125 -49491364 - L1PA13 LINE L1 -1076 5070 4089 4560 146 83 25 chr12 94791604 94792468 -49490021 - MER49 LTR ERV1 -9 914 1 2172 115 0 3 chr12 94792751 94793046 -49489443 + AluSx SINE Alu 1 294 -18 7094 40 18 1 chr12 94793249 94794181 -49488308 + L1PA5 LINE L1 5199 6145 -9 22 0 0 0 chr12 94794181 94794203 -49488286 + AT_rich Low_complexity Low_complexity 1 22 0 402 335 98 37 chr12 94794603 94794818 -49487671 + MIR SINE MIR 9 236 -26 617 310 121 24 chr12 94795125 94795258 -49487231 + L2 LINE L2 2996 3115 -198 2043 117 40 46 chr12 94795258 94795502 -49486987 - MER7A DNA MER2_type -2692 346 104 2267 63 0 14 chr12 94795502 94795812 -49486677 + AluY SINE Alu 1 306 0 2043 117 40 46 chr12 94795812 94795916 -49486573 - MER7A DNA MER2_type -2934 104 1 617 310 121 24 chr12 94795916 94796072 -49486417 + L2 LINE L2 3115 3313 0 191 250 69 28 chr12 94796616 94796688 -49485801 + MIR3 SINE MIR 130 204 -4 23 33 0 0 chr12 94797212 94797242 -49485247 + AT_rich Low_complexity Low_complexity 1 30 0 500 257 107 56 chr12 94797653 94798041 -49484448 - MLT1G3 LTR MaLR -108 447 3 2733 241 113 54 chr12 94798168 94799394 -49483095 - L1MDa LINE L1 -4873 1667 298 1915 145 0 22 chr12 94799453 94799771 -49482718 - AluSx SINE Alu -1 311 1 210 180 0 20 chr12 94800300 94800350 -49482139 + T-rich Low_complexity Low_complexity 2 50 0 2074 122 59 31 chr12 94801464 94801818 -49480671 - THE1B LTR MaLR 0 364 1 1712 181 3 3 chr12 94803029 94803321 -49479168 - AluJb SINE Alu -2 310 19 218 397 60 26 chr12 94803974 94804125 -49478364 + L2 LINE L2 3100 3255 -17 189 0 0 0 chr12 94804522 94804543 -49477946 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1573 278 56 13 chr12 94805233 94805858 -49476631 + L1M4 LINE L1 4611 5262 -884 1603 324 36 43 chr12 94805880 94806600 -49475889 - ERVL LTR ERVL -1464 4300 3586 1363 332 107 2 chr12 94806614 94807247 -49475242 - ERVL LTR ERVL -2004 3481 2782 1708 193 205 0 chr12 94807388 94807807 -49474682 - MLT1D LTR MaLR 0 505 1 267 292 45 34 chr12 94808130 94808219 -49474270 + MIR SINE MIR 172 261 -1 315 259 237 15 chr12 94808250 94808385 -49474104 - MER5B DNA MER1_type -5 173 9 1341 83 44 31 chr12 94809924 94810152 -49472337 + L1MA5A LINE L1 6062 6292 -5 35 24 0 0 chr12 94810152 94810194 -49472295 + AT_rich Low_complexity Low_complexity 1 42 0 1280 78 0 0 chr12 94810849 94811015 -49471474 - L1PA3 LINE L1 -14 6141 5976 1843 128 29 14 chr12 94811026 94811307 -49471182 + AluJb SINE Alu 3 287 -25 374 310 115 40 chr12 94811588 94811814 -49470675 + MIR SINE MIR 20 262 0 22 56 0 0 chr12 94812034 94812070 -49470419 + AT_rich Low_complexity Low_complexity 1 36 0 1799 226 28 2 chr12 94912955 94913353 -49369136 - MSTB LTR MaLR 0 426 19 351 291 84 38 chr12 94913353 94913450 -49369039 + L1 LINE L1 2654 2745 -3401 1477 219 3 7 chr12 94913450 94913742 -49368747 + AluJb SINE Alu 1 291 -21 351 291 84 38 chr12 94913742 94913881 -49368608 + L1 LINE L1 2745 2901 -3245 22 0 0 0 chr12 94913881 94913903 -49368586 + AT_rich Low_complexity Low_complexity 1 22 0 303 264 11 11 chr12 94914538 94914625 -49367864 - MLT1H LTR MaLR -462 87 1 289 296 85 40 chr12 94914642 94914818 -49367671 + MIR SINE MIR 23 206 -56 1835 115 51 0 chr12 94914878 94915131 -49367358 + AluSx SINE Alu 34 299 -13 1535 141 34 0 chr12 94915257 94915519 -49366970 - MER7A DNA MER2_type -77 269 1 185 243 0 0 chr12 94915529 94915566 -49366923 + L2 LINE L2 3224 3260 -12 1865 124 60 3 chr12 94915739 94916021 -49366468 - AluJb SINE Alu -14 298 1 267 147 40 67 chr12 94916437 94916512 -49365977 + L1ME3 LINE L1 5940 6012 -150 1316 98 79 19 chr12 94917065 94917310 -49365179 - MER1B DNA MER1_type 0 339 121 469 329 27 0 chr12 94917470 94917619 -49364870 - MIR SINE MIR -92 170 18 449 269 48 59 chr12 94917954 94918140 -49364349 + MIR SINE MIR 28 211 -51 621 11 23 11 chr12 94920515 94920602 -49361887 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 1431 213 18 25 chr12 94920622 94921030 -49361459 - MLT2B1 LTR ERVL -64 451 1 2073 229 107 72 chr12 94921126 94921891 -49360598 + MER21B LTR ERV1 21 812 -51 2269 128 0 0 chr12 94922181 94922487 -49360002 + AluSg SINE Alu 1 306 -4 196 309 119 12 chr12 94923050 94923134 -49359355 - L2 LINE L2 -57 3256 3164 290 67 22 0 chr12 94924019 94924064 -49358425 + (TG)n Simple_repeat Simple_repeat 1 46 0 274 85 0 21 chr12 94924501 94924548 -49357941 - MADE1 DNA Mariner 0 80 35 950 193 84 123 chr12 94924736 94925141 -49357348 + MSTD LTR MaLR 1 389 -7 243 88 0 0 chr12 94925796 94925830 -49356659 + (TG)n Simple_repeat Simple_repeat 1 34 0 2328 95 10 0 chr12 94926342 94926648 -49355841 + AluSq SINE Alu 1 309 -4 1492 228 21 3 chr12 94926659 94926949 -49355540 + AluJo SINE Alu 1 295 -17 356 276 15 75 chr12 94926960 94927159 -49355330 - L1ME4a LINE L1 -92 6029 5843 290 143 0 0 chr12 94927191 94927240 -49355249 - L1ME4a LINE L1 -2036 5772 5724 889 323 137 20 chr12 94927677 94928336 -49354153 - L2 LINE L2 -1447 1867 1132 447 209 0 0 chr12 94929332 94929447 -49353042 + GA-rich Low_complexity Low_complexity 3 117 0 1117 137 46 0 chr12 94929857 94930054 -49352435 - L1PB2 LINE L1 0 6151 5946 229 310 0 23 chr12 94930709 94930796 -49351693 + CT-rich Low_complexity Low_complexity 6 90 0 477 170 0 11 chr12 94930990 94931084 -49351405 - L1MA8 LINE L1 -3 6288 6196 233 273 0 30 chr12 94931622 94931688 -49350801 + L2 LINE L2 2626 2689 -625 530 245 0 0 chr12 94931710 94931808 -49350681 + MIR SINE MIR 13 110 -152 614 269 118 11 chr12 94931841 94932112 -49350377 - MLT1I LTR MaLR 0 409 110 992 270 63 45 chr12 94932664 94933103 -49349386 - MLT1J2 LTR MaLR -4 431 1 1991 244 36 32 chr12 94933649 94934314 -49348175 - L1ME3 LINE L1 0 6162 5495 423 220 103 19 chr12 94934387 94934615 -49347874 + L1ME LINE L1 5263 5494 -668 * 448 303 112 32 chr12 94934613 94935214 -49347275 - L1ME2 LINE L1 -315 5849 5293 313 313 149 15 chr12 94935217 94935485 -49347004 - L1ME2 LINE L1 -875 5271 4968 584 270 50 29 chr12 94935593 94935974 -49346515 - L1ME2 LINE L1 -1316 4830 4442 915 188 26 31 chr12 94936037 94936229 -49346260 - AluJo SINE Alu 0 312 122 186 43 0 0 chr12 94936264 94936287 -49346202 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2106 98 0 4 chr12 94937000 94937276 -49345213 + AluSg SINE Alu 1 275 -35 204 40 0 0 chr12 94937280 94937305 -49345184 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 599 304 29 25 chr12 94937305 94937509 -49344980 - MIR SINE MIR -7 255 51 426 298 44 25 chr12 94937877 94938035 -49344454 + MIR SINE MIR 80 240 -22 279 348 36 9 chr12 94939286 94939398 -49343091 + MIR SINE MIR 32 146 -62 22 0 0 0 chr12 94939575 94939597 -49342892 + AT_rich Low_complexity Low_complexity 1 22 0 742 313 52 69 chr12 94939814 94940520 -49341969 + L2 LINE L2 2560 3263 -50 315 275 75 54 chr12 94940607 94940737 -49341752 - MIR SINE MIR -67 141 45 460 156 67 223 chr12 94942110 94942334 -49340155 + MER5A DNA MER1_type 1 189 0 192 77 0 0 chr12 94943686 94943712 -49338777 + (TG)n Simple_repeat Simple_repeat 1 26 0 435 52 0 0 chr12 94944384 94944442 -49338047 + (CA)n Simple_repeat Simple_repeat 1 58 0 1851 190 26 0 chr12 94944687 94945035 -49337454 - MLT1B LTR MaLR -8 382 26 338 250 0 36 chr12 94945367 94945451 -49337038 + L2 LINE L2 3233 3313 0 964 240 202 57 chr12 94945855 94946019 -49336470 + MLT1F LTR MaLR 3 142 -400 450 0 0 0 chr12 94946019 94946069 -49336420 + (TC)n Simple_repeat Simple_repeat 1 50 0 964 240 202 57 chr12 94946069 94946129 -49336360 + MLT1F LTR MaLR 142 192 -350 189 0 0 0 chr12 94946129 94946150 -49336339 + (TC)n Simple_repeat Simple_repeat 1 21 0 964 240 202 57 chr12 94946150 94946394 -49336095 + MLT1F LTR MaLR 192 540 -2 400 179 64 0 chr12 94946402 94946480 -49336009 - MER58 DNA MER1_type 0 2420 133 273 339 43 17 chr12 94947149 94947264 -49335225 + MIR SINE MIR 31 148 -60 3837 272 123 46 chr12 94949103 94951418 -49331071 + HAL1 LINE L1 1 2493 -14 2330 109 0 0 chr12 94951490 94951793 -49330696 + AluSx SINE Alu 1 303 -9 2263 90 0 0 chr12 94951946 94952224 -49330265 + AluSc SINE Alu 1 278 -31 22 0 0 0 chr12 94952250 94952272 -49330217 + AT_rich Low_complexity Low_complexity 1 22 0 426 233 124 52 chr12 94952284 94952477 -49330012 + HAL1 LINE L1 1301 1507 -1000 319 349 62 38 chr12 94952927 94953136 -49329353 + L2 LINE L2 2871 3084 -188 222 154 31 62 chr12 94953307 94953372 -49329117 + T-rich Low_complexity Low_complexity 2 64 0 199 345 64 0 chr12 94953762 94953872 -49328617 + L3 LINE CR1 1446 1562 -15 505 265 15 0 chr12 94955474 94955606 -49326883 + L2 LINE L2 2143 2276 -1038 711 223 133 79 chr12 94955618 94955986 -49326503 + L2 LINE L2 2922 3309 -4 408 20 0 0 chr12 94957566 94957615 -49324874 + (TC)n Simple_repeat Simple_repeat 2 50 0 198 0 0 0 chr12 94957614 94957636 -49324853 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 2342 62 10 0 chr12 94957671 94957960 -49324529 - AluY SINE Alu -19 292 1 229 236 28 28 chr12 94958326 94958432 -49324057 + (CA)n Simple_repeat Simple_repeat 1 106 0 413 243 34 34 chr12 94958444 94958621 -49323868 + (CA)n Simple_repeat Simple_repeat 2 178 0 200 194 22 52 chr12 94958697 94958831 -49323658 + (CATATA)n Simple_repeat Simple_repeat 2 131 0 251 270 32 16 chr12 94958835 94958961 -49323528 + (CA)n Simple_repeat Simple_repeat 1 128 0 205 223 21 0 chr12 94959004 94959098 -49323391 + (CA)n Simple_repeat Simple_repeat 1 96 0 515 281 55 55 chr12 94959921 94960159 -49322330 + MIR SINE MIR 16 253 -9 441 299 47 23 chr12 94960271 94960439 -49322050 - MIR SINE MIR -62 146 8 200 180 0 20 chr12 94960788 94960838 -49321651 + GA-rich Low_complexity Low_complexity 3 51 0 360 111 0 0 chr12 94961574 94961628 -49320861 + (CA)n Simple_repeat Simple_repeat 1 54 0 279 0 0 0 chr12 94961627 94961658 -49320831 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 220 305 67 38 chr12 94962708 94962813 -49319676 - MIR3 SINE MIR -45 163 56 243 290 72 0 chr12 94963206 94963275 -49319214 + L3 LINE CR1 1499 1572 -5 724 281 61 45 chr12 94963427 94963837 -49318652 + MLT1J LTR MaLR 1 460 -51 2429 146 15 0 chr12 94964471 94964868 -49317621 + MER57A LTR ERV1 1 403 0 2614 94 0 11 chr12 94964932 94965304 -49317185 + L1PB1 LINE L1 5777 6144 -7 313 262 41 25 chr12 94965475 94965597 -49316892 + LTR67 LTR ERVL 432 555 -2 919 180 5 37 chr12 94966024 94966213 -49316276 + MER5A DNA MER1_type 7 189 0 355 366 76 6 chr12 94966382 94966554 -49315935 + MIR3 SINE MIR 16 199 -9 288 0 0 0 chr12 94966894 94966926 -49315563 + (TG)n Simple_repeat Simple_repeat 2 33 0 277 250 13 0 chr12 94967586 94967662 -49314827 + MER116 DNA Mariner 1 77 -3 543 167 18 0 chr12 94967918 94968032 -49314457 + L1MB7 LINE L1 6054 6169 -15 589 138 0 11 chr12 94969133 94969227 -49313262 + AluJ/FLAM SINE Alu 1 93 -219 351 0 0 0 chr12 94970325 94970364 -49312125 + (GA)n Simple_repeat Simple_repeat 1 39 0 226 282 188 0 chr12 94970449 94970534 -49311955 - L1ME3A LINE L1 -105 6065 5965 359 388 54 64 chr12 94970584 94971101 -49311388 - L1ME3A LINE L1 -202 5968 5370 194 341 61 0 chr12 94972591 94972673 -49309816 + L2 LINE L2 3227 3313 0 498 79 0 0 chr12 94972955 94973031 -49309458 + (GGAA)n Simple_repeat Simple_repeat 3 78 0 191 143 122 41 chr12 94973124 94973173 -49309316 - L2 LINE L2 0 3313 3261 315 355 51 7 chr12 94973261 94973399 -49309090 + MIR SINE MIR 47 190 -72 2338 100 0 3 chr12 94973942 94974242 -49308247 - AluSx SINE Alu -12 300 2 623 270 143 17 chr12 94974482 94974958 -49307531 + L1ME LINE L1 5265 5802 -319 1942 144 21 53 chr12 94974962 94975338 -49307151 + THE1B LTR MaLR 1 364 0 9159 63 0 1 chr12 94975643 94977537 -49304952 + L1PA6 LINE L1 4203 6094 -60 1604 158 44 0 chr12 94977683 94977956 -49304533 + Tigger1 DNA MER2_type 28 312 -2106 4779 113 37 11 chr12 94977956 94978269 -49304220 + L1PB3 LINE L1 5398 5701 -453 2098 123 42 31 chr12 94978269 94978628 -49303861 + THE1B LTR MaLR 2 364 0 4779 113 37 11 chr12 94978628 94979052 -49303437 + L1PB3 LINE L1 5701 6154 0 26 30 0 0 chr12 94979056 94979089 -49303400 + AT_rich Low_complexity Low_complexity 1 33 0 8096 113 11 8 chr12 94979089 94980300 -49302189 + Tigger1 DNA MER2_type 299 1512 -906 2698 173 44 34 chr12 94980336 94980903 -49301586 - LTR27 LTR ERV1 0 636 64 * 3805 125 17 35 chr12 94980897 94981295 -49301194 + Tigger1 DNA MER2_type 1686 2069 -349 7373 42 0 0 chr12 94981295 94982363 -49300126 - L1PA3 LINE L1 -3 6152 5084 3805 125 17 35 chr12 94982363 94982613 -49299876 + Tigger1 DNA MER2_type 2069 2322 -96 1150 65 13 0 chr12 94982625 94982780 -49299709 + Tigger1 DNA MER2_type 1122 1278 -1140 331 194 236 0 chr12 94982783 94982855 -49299634 + Tigger1 DNA MER2_type 2330 2418 0 473 273 109 6 chr12 94982887 94983052 -49299437 - Charlie8 DNA MER1_type -2202 215 34 447 19 0 0 chr12 94986477 94986529 -49295960 + (CA)n Simple_repeat Simple_repeat 1 52 0 1871 154 24 0 chr12 94986662 94986955 -49295534 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr12 94987217 94987246 -49295243 + AT_rich Low_complexity Low_complexity 1 29 0 408 320 62 36 chr12 94987968 94988193 -49294296 + MIR SINE MIR 18 248 -14 211 147 73 118 chr12 94988775 94988843 -49293646 - L2 LINE L2 -3 3310 3246 198 0 0 0 chr12 94989534 94989556 -49292933 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 199 322 126 23 chr12 94991897 94991984 -49290505 + L2 LINE L2 3205 3300 -13 240 387 40 36 chr12 94992175 94992400 -49290089 - L2 LINE L2 -220 3052 2827 349 306 0 0 chr12 94992740 94992825 -49289664 + L2 LINE L2 3188 3272 0 845 261 51 9 chr12 94994802 94995017 -49287472 - MER58A DNA MER1_type 0 224 1 192 271 21 0 chr12 94995569 94995617 -49286872 - MIR SINE MIR -11 251 203 1643 161 0 34 chr12 94995631 94995953 -49286536 + AluJb SINE Alu 1 312 0 3362 209 74 50 chr12 94996045 94997293 -49285196 - L1MA9 LINE L1 -39 6273 4998 230 280 186 8 chr12 94997298 94997416 -49285073 - MIR SINE MIR -99 163 25 505 250 185 11 chr12 94997760 94997949 -49284540 - MIR SINE MIR 0 262 42 21 0 0 0 chr12 94998278 94998299 -49284190 + AT_rich Low_complexity Low_complexity 1 21 0 567 263 16 81 chr12 95000132 95000379 -49282110 - MIR SINE MIR -1 261 31 2111 117 3 3 chr12 95000387 95000708 -49281781 - AluSc SINE Alu 0 309 1 325 323 40 40 chr12 95000804 95001027 -49281462 - L2 LINE L2 0 3313 3091 624 182 91 35 chr12 95001389 95001532 -49280957 - MIR SINE MIR -54 208 58 361 289 128 45 chr12 95001598 95001754 -49280735 - MER5A DNA MER1_type -1 188 20 230 302 38 28 chr12 95001751 95001857 -49280632 - L2 LINE L2 -1821 1493 1387 * 24 53 0 0 chr12 95003359 95003397 -49279092 + AT_rich Low_complexity Low_complexity 1 38 0 306 217 26 0 chr12 95003414 95003529 -49278960 + (TA)n Simple_repeat Simple_repeat 1 118 0 2184 115 0 19 chr12 95004363 95004677 -49277812 - AluSq SINE Alu -1 312 5 1091 321 84 4 chr12 95005514 95005978 -49276511 - L2 LINE L2 -381 2933 2433 447 240 127 33 chr12 95006057 95006246 -49276243 - MIR SINE MIR -52 210 8 481 294 54 54 chr12 95006463 95006684 -49275805 + MIR SINE MIR 30 250 -12 231 242 129 23 chr12 95006765 95006872 -49275617 - MIR SINE MIR -67 141 35 391 272 19 29 chr12 95007309 95007412 -49275077 - MER5A DNA MER1_type -25 164 63 794 212 101 0 chr12 95007424 95007613 -49274876 + L1MB8 LINE L1 5401 5608 -576 2495 170 20 69 chr12 95007738 95007786 -49274703 + L1MB8 LINE L1 5598 5647 -531 2262 132 33 8 chr12 95007786 95008151 -49274338 + THE1C LTR MaLR 1 374 -1 8647 148 70 35 chr12 95008152 95008541 -49273948 + THE1C-int LTR MaLR 1 375 -1205 2098 136 10 0 chr12 95008541 95008835 -49273654 + AluSx SINE Alu 1 297 -15 8647 148 70 35 chr12 95008835 95009972 -49272517 + THE1C-int LTR MaLR 375 1580 0 2427 133 8 31 chr12 95009972 95010356 -49272133 + THE1C LTR MaLR 1 375 0 2495 170 20 69 chr12 95010356 95010910 -49271579 + L1MB8 LINE L1 5645 6173 -5 183 255 43 0 chr12 95010921 95010968 -49271521 - MER5B DNA MER1_type -129 49 1 377 311 223 0 chr12 95010984 95011132 -49271357 + MER5A DNA MER1_type 9 189 0 516 277 114 0 chr12 95011914 95012098 -49270391 + MIR SINE MIR 58 262 0 2327 162 53 22 chr12 95012364 95012815 -49269674 + MLT1C LTR MaLR 1 465 -2 701 234 27 21 chr12 95012854 95013042 -49269447 - MER5A DNA MER1_type 0 189 1 349 291 149 22 chr12 95013365 95013499 -49268990 + MER5B DNA MER1_type 22 172 -6 446 313 14 7 chr12 95013594 95013738 -49268751 + MIR SINE MIR 2 146 -116 211 154 0 26 chr12 95013944 95013983 -49268506 + L2 LINE L2 3271 3308 -5 542 290 161 36 chr12 95013992 95014216 -49268273 + MIR SINE MIR 5 256 -6 470 259 65 7 chr12 95015205 95015344 -49267145 + MIR SINE MIR 30 176 -86 * 498 290 0 8 chr12 95015342 95015466 -49267023 - L2 LINE L2 -1 3312 3190 1843 209 63 3 chr12 95015472 95015855 -49266634 - ERVL LTR ERVL -2584 3180 2775 740 89 32 102 chr12 95016485 95016642 -49265847 - HSMAR2 DNA Mariner -2 1300 1155 7444 120 26 11 chr12 95016937 95018082 -49264407 - HSMAR2 DNA Mariner -139 1163 2 309 296 125 38 chr12 95018089 95018329 -49264160 + HAL1 LINE L1 1623 1883 -624 22 35 0 0 chr12 95019133 95019162 -49263327 + AT_rich Low_complexity Low_complexity 1 29 0 769 141 0 23 chr12 95020546 95020674 -49261815 + AluJb SINE Alu 1 125 -187 31 0 0 0 chr12 95020676 95020707 -49261782 + AT_rich Low_complexity Low_complexity 1 31 0 660 257 70 55 chr12 95020707 95020979 -49261510 + L2 LINE L2 3038 3313 0 2045 106 17 7 chr12 95021150 95021442 -49261047 - AluSx SINE Alu -17 295 1 1066 124 23 17 chr12 95022431 95022608 -49259881 - L1PA11 LINE L1 0 6174 5997 901 233 36 14 chr12 95022892 95023111 -49259378 + MER58A DNA MER1_type 1 224 0 207 200 0 0 chr12 95025385 95025430 -49257059 + T-rich Low_complexity Low_complexity 1 45 0 5713 145 18 1 chr12 95025563 95026495 -49255994 + L1MC1 LINE L1 5386 6333 0 308 303 41 25 chr12 95027275 95027397 -49255092 + L2 LINE L2 2852 2975 -338 430 134 0 24 chr12 95027889 95028122 -49254367 + AluJo SINE Alu 3 287 -25 201 39 0 0 chr12 95028122 95028148 -49254341 + (TTAAA)n Simple_repeat Simple_repeat 3 28 0 565 337 20 6 chr12 95029518 95029729 -49252760 - MIR SINE MIR -13 249 38 221 375 44 29 chr12 95029804 95029940 -49252549 + L2 LINE L2 3123 3260 -12 868 213 0 0 chr12 95030308 95030472 -49252017 + FRAM SINE Alu 3 166 0 286 363 153 23 chr12 95031233 95031624 -49250865 + L2 LINE L2 2418 2859 -455 1871 125 14 14 chr12 95031932 95032212 -49250277 + AluSx SINE Alu 27 306 -6 409 279 47 21 chr12 95032253 95032443 -49250046 + L1MC5 LINE L1 7713 7907 -54 331 291 103 0 chr12 95032492 95032609 -49249880 - MIR SINE MIR -70 192 64 14083 178 40 20 chr12 95032750 95032886 -49249603 + L1M2 LINE L1 2353 2485 -3759 2270 97 7 0 chr12 95032886 95033185 -49249304 + AluSg1 SINE Alu 1 301 -8 14083 178 40 20 chr12 95033185 95035869 -49246620 + L1M2 LINE L1 2485 5221 -1023 447 19 0 0 chr12 95035869 95035921 -49246568 + (TA)n Simple_repeat Simple_repeat 1 52 0 14083 178 40 20 chr12 95035921 95036207 -49246282 + L1M2 LINE L1 5221 5500 -744 1467 147 157 0 chr12 95036323 95036707 -49245782 + L1MA8 LINE L1 5138 5598 -702 297 224 282 0 chr12 95036716 95036801 -49245688 + AluJo/FLAM SINE Alu 1 109 -193 728 206 0 38 chr12 95036803 95036948 -49245541 + AluSg/x SINE Alu 150 290 -20 3800 118 9 60 chr12 95036948 95037684 -49244805 + L1MA8 LINE L1 5593 6291 0 728 206 0 38 chr12 95037684 95037698 -49244791 + AluSg/x SINE Alu 290 303 -7 181 326 149 57 chr12 95037711 95037886 -49244603 - L2 LINE L2 -93 3179 2989 1098 296 77 51 chr12 95038082 95038767 -49243722 + HAL1 LINE L1 315 1017 -1490 497 238 100 9 chr12 95039000 95039210 -49243279 + HAL1 LINE L1 1031 1259 -1248 2386 255 75 95 chr12 95039210 95040040 -49242449 + L2 LINE L2 1733 2578 -735 1933 160 13 40 chr12 95040040 95040414 -49242075 - THE1B LTR MaLR 0 364 1 2386 255 75 95 chr12 95040414 95040950 -49241539 + L2 LINE L2 2578 3072 -241 312 91 0 0 chr12 95040950 95040994 -49241495 + (CA)n Simple_repeat Simple_repeat 2 45 0 2386 255 75 95 chr12 95040994 95041187 -49241302 + L2 LINE L2 3072 3267 -46 1244 284 101 34 chr12 95041207 95042088 -49240401 + HAL1 LINE L1 1233 2172 -335 228 123 18 35 chr12 95042705 95042762 -49239727 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 421 372 55 26 chr12 95042970 95043317 -49239172 - L2 LINE L2 -416 2898 2542 2902 111 17 7 chr12 95043408 95043830 -49238659 + MSTA LTR MaLR 1 426 -2 2152 110 21 3 chr12 95044150 95044440 -49238049 + AluSq SINE Alu 1 295 -18 2344 92 0 0 chr12 95045037 95045340 -49237149 - AluSc SINE Alu -6 303 1 1408 126 40 9 chr12 95047257 95047479 -49235010 + MER30 DNA MER1_type 2 230 0 587 288 44 62 chr12 95047582 95047971 -49234518 - L1MC4a LINE L1 -1905 5903 5522 1094 196 58 12 chr12 95048111 95048351 -49234138 - AluJb SINE Alu -23 289 39 1024 258 61 89 chr12 95048579 95049037 -49233452 + L2 LINE L2 2863 3307 -6 1772 165 21 4 chr12 95049973 95050252 -49232237 + AluJb SINE Alu 1 284 -28 24 53 0 0 chr12 95052651 95052689 -49229800 + AT_rich Low_complexity Low_complexity 1 38 0 311 276 29 19 chr12 95052908 95053013 -49229476 + L1MCa LINE L1 1995 2100 -4326 301 302 170 0 chr12 95053262 95053368 -49229121 + L2 LINE L2 3141 3264 -8 21 0 0 0 chr12 95053676 95053697 -49228792 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr12 95054965 95055007 -49227482 + AT_rich Low_complexity Low_complexity 1 42 0 334 226 40 73 chr12 95055116 95055240 -49227249 + L2 LINE L2 3194 3313 0 357 121 89 129 chr12 95055304 95055428 -49227061 + L1MA9 LINE L1 6158 6276 -36 808 278 121 36 chr12 95055443 95055958 -49226531 - L2 LINE L2 -12 3301 2590 509 243 54 67 chr12 95055959 95056167 -49226322 - MIR SINE MIR -13 249 45 196 341 135 32 chr12 95056420 95056546 -49225943 - L3 LINE CR1 -2 1575 1437 431 305 63 23 chr12 95058236 95058410 -49224079 - MIR SINE MIR -54 208 28 2071 150 0 0 chr12 95058636 95058929 -49223560 - AluSx SINE Alu -19 293 1 22 35 0 0 chr12 95060464 95060493 -49221996 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 95060522 95060543 -49221946 + AT_rich Low_complexity Low_complexity 1 21 0 320 315 182 0 chr12 95061242 95061385 -49221104 - L2 LINE L2 0 3272 3104 223 321 0 0 chr12 95061710 95061766 -49220723 + L2 LINE L2 3256 3311 -2 780 239 6 6 chr12 95062473 95062653 -49219836 + AluJb SINE Alu 133 312 0 429 127 0 0 chr12 95062664 95062743 -49219746 + (CAGG)n Simple_repeat Simple_repeat 4 82 0 471 232 107 0 chr12 95063120 95063232 -49219257 - MER5C DNA MER1_type -200 124 1 1518 116 89 20 chr12 95063685 95063977 -49218512 + THE1C LTR MaLR 1 312 -63 182 0 107 0 chr12 95065338 95065366 -49217123 + T-rich Low_complexity Low_complexity 5 35 0 7024 54 13 0 chr12 95065366 95066572 -49215917 - L1PA8 LINE L1 -18 6469 5258 5758 100 21 0 chr12 95066575 95067447 -49215042 - L1PA8 LINE L1 -1308 5153 4264 * 6968 107 7 5 chr12 95067439 95068460 -49214029 - L1PA8 LINE L1 -5140 1321 299 437 94 0 0 chr12 95068459 95068523 -49213966 - L1PA8 LINE L1 -6388 73 10 * 200 125 0 25 chr12 95068694 95068734 -49213755 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 551 171 0 0 chr12 95068739 95068827 -49213662 - FRAM SINE Alu -33 143 56 2352 209 44 36 chr12 95069523 95070073 -49212416 + MLT2B3 LTR ERVL 1 554 0 915 111 0 22 chr12 95070919 95071054 -49211435 + FLAM_C SINE Alu 1 132 -1 21 36 0 0 chr12 95071793 95071821 -49210668 + AT_rich Low_complexity Low_complexity 1 28 0 1136 95 0 0 chr12 95072704 95072862 -49209627 + L1MA1 LINE L1 6141 6298 -4 225 184 0 79 chr12 95072872 95072948 -49209541 + A-rich Low_complexity Low_complexity 1 70 0 1708 171 27 14 chr12 95073085 95073377 -49209112 + AluJb SINE Alu 1 296 -16 223 331 8 57 chr12 95073506 95073630 -49208859 - MIR SINE MIR -136 126 9 920 191 60 60 chr12 95074509 95074600 -49207889 + L1ME3 LINE L1 5791 5881 -281 1361 101 10 14 chr12 95074600 95074805 -49207684 + L1PA11 LINE L1 5967 6174 0 920 191 60 60 chr12 95074805 95075011 -49207478 + L1ME3 LINE L1 5880 6088 -74 27 0 0 0 chr12 95075013 95075040 -49207449 + AT_rich Low_complexity Low_complexity 1 27 0 514 270 176 37 chr12 95075245 95075541 -49206948 + MER46C DNA MER2_type 1 337 -1 463 319 16 11 chr12 95077043 95077225 -49205264 + MIR SINE MIR 47 229 -33 1860 213 21 50 chr12 95077359 95077894 -49204595 - MLT1E3 LTR MaLR 0 624 106 365 315 30 56 chr12 95078223 95078420 -49204069 + L2 LINE L2 2842 3033 -239 602 321 106 42 chr12 95078428 95078739 -49203750 - L2 LINE L2 0 3272 2942 2285 93 13 7 chr12 95078779 95079081 -49203408 - AluSx SINE Alu -8 304 1 2479 65 0 3 chr12 95079092 95079400 -49203089 - AluY SINE Alu -4 307 1 426 376 73 12 chr12 95079517 95079847 -49202642 - L2 LINE L2 -601 2713 2364 1014 245 127 26 chr12 95080107 95080330 -49202159 + L2 LINE L2 2932 3204 -109 201 74 0 0 chr12 95080330 95080357 -49202132 + (TG)n Simple_repeat Simple_repeat 2 28 0 1014 245 127 26 chr12 95080357 95080480 -49202009 + L2 LINE L2 3204 3313 0 675 305 145 36 chr12 95080490 95081097 -49201392 - L2 LINE L2 -1035 2279 1607 360 305 68 0 chr12 95081282 95081400 -49201089 + L2 LINE L2 3147 3272 0 255 286 52 0 chr12 95081442 95081519 -49200970 - L2 LINE L2 -8 3305 3225 351 324 112 65 chr12 95082349 95082856 -49199633 + L2 LINE L2 2090 2620 -694 209 414 0 0 chr12 95082893 95082980 -49199509 + MIR SINE MIR 45 131 -77 366 333 0 16 chr12 95083610 95083733 -49198756 + L2 LINE L2 3187 3307 -6 481 283 107 23 chr12 95084311 95084488 -49198001 + MIR SINE MIR 17 208 -54 11954 155 14 17 chr12 95085247 95087785 -49194704 - L1MA2 LINE L1 0 6304 3780 1777 124 49 4 chr12 95087785 95088050 -49194439 - AluSx SINE Alu -35 277 1 11954 155 14 17 chr12 95088050 95088935 -49193554 - L1MA2 LINE L1 -2524 3780 2894 504 329 86 46 chr12 95089181 95089598 -49192891 + L2 LINE L2 2827 3260 -12 728 312 122 26 chr12 95089861 95090239 -49192250 + L3b LINE CR1 1117 1530 -53 267 331 6 47 chr12 95090576 95090745 -49191744 + L2 LINE L2 2887 3048 -224 198 328 31 0 chr12 95093585 95093649 -49188840 - MIR3 SINE MIR -52 156 91 240 266 62 0 chr12 95094069 95094133 -49188356 + MIR SINE MIR 37 104 -158 2783 92 8 0 chr12 95094468 95094859 -49187630 + L1PA16 LINE L1 5764 6157 -9 23 54 0 0 chr12 95094859 95094896 -49187593 + AT_rich Low_complexity Low_complexity 1 37 0 2174 147 0 0 chr12 95095136 95095448 -49187041 - AluSx SINE Alu 0 312 1 507 274 7 14 chr12 95095678 95095824 -49186665 + MIR SINE MIR 102 246 -16 449 350 71 26 chr12 95095869 95096178 -49186311 + L3b LINE CR1 1111 1433 -150 479 327 117 14 chr12 95096475 95096689 -49185800 + MIR SINE MIR 20 255 -7 327 268 68 49 chr12 95097227 95097432 -49185057 - MLT1J LTR MaLR -238 273 65 504 383 0 0 chr12 95098539 95098714 -49183775 + MIR3 SINE MIR 31 205 -3 2461 85 37 8 chr12 95099428 95099780 -49182709 - THE1B LTR MaLR -2 362 1 229 292 77 0 chr12 95099817 95099882 -49182607 - MER91A DNA MER1_type -28 168 99 2068 153 93 25 chr12 95100429 95100828 -49181661 - MSTB LTR MaLR 0 426 1 865 200 0 0 chr12 95100844 95100989 -49181500 + AluJb SINE Alu 151 295 -17 1166 191 29 0 chr12 95101289 95101498 -49180991 - MER20 DNA MER1_type -4 215 1 825 304 19 15 chr12 95101502 95101762 -49180727 + MIR SINE MIR 2 262 0 2108 95 3 11 chr12 95101926 95102244 -49180245 - AluSc SINE Alu 0 316 1 1250 270 77 19 chr12 95102322 95102788 -49179701 + MLT1J LTR MaLR 1 493 -18 403 152 0 0 chr12 95103035 95103101 -49179388 - LTR23 LTR ERV1 -34 403 338 2425 138 18 0 chr12 95103453 95103836 -49178653 + MLT1B LTR MaLR 1 390 0 1064 296 98 26 chr12 95104582 95105042 -49177447 + MLT1J LTR MaLR 3 495 -16 214 258 0 0 chr12 95106929 95106995 -49175494 + (TA)n Simple_repeat Simple_repeat 2 67 0 743 171 130 93 chr12 95107461 95107677 -49174812 - MER58A DNA MER1_type 0 224 1 475 276 16 16 chr12 95107783 95107910 -49174579 - MER5B DNA MER1_type -26 152 26 396 188 10 42 chr12 95107993 95108089 -49174400 - MLT1J2 LTR MaLR 0 450 358 309 226 24 74 chr12 95108127 95108268 -49174221 - MLT1J2 LTR MaLR -235 211 71 433 239 35 9 chr12 95110283 95110396 -49172093 - MIR3 SINE MIR -3 205 90 2217 104 0 13 chr12 95110644 95110943 -49171546 + AluSg1 SINE Alu 1 295 -14 2150 118 0 20 chr12 95111544 95111850 -49170639 - AluSx SINE Alu -12 300 1 2393 86 0 0 chr12 95111919 95112222 -49170267 - AluSg SINE Alu -7 303 1 970 192 5 28 chr12 95113833 95114047 -49168442 - MER3 DNA MER1_type 0 209 1 213 319 75 32 chr12 95114212 95114306 -49168183 - MIR SINE MIR -74 134 37 398 315 42 4 chr12 95114316 95114474 -49168015 + MIR SINE MIR 15 172 -67 216 279 139 0 chr12 95114699 95114785 -49167704 + MIR SINE MIR 159 256 -6 233 278 209 34 chr12 95115497 95115655 -49166834 - MIR3 SINE MIR -67 141 9 418 364 17 0 chr12 95115821 95115997 -49166492 + L3 LINE CR1 579 757 -820 2450 146 5 12 chr12 95116007 95116418 -49166071 + L1PA16 LINE L1 5750 6157 -9 1104 246 84 23 chr12 95116530 95116701 -49165788 + MLT1C LTR MaLR 10 169 -298 1487 138 3 28 chr12 95116701 95116990 -49165499 - L1MA4 LINE L1 -1 6299 6018 1104 246 84 23 chr12 95116990 95117248 -49165241 + MLT1C LTR MaLR 169 465 -2 489 270 73 64 chr12 95117447 95117651 -49164838 + MIR SINE MIR 23 228 -34 5900 109 15 0 chr12 95117677 95118693 -49163796 - L1PA13 LINE L1 -2 6161 5128 236 304 0 54 chr12 95118742 95118834 -49163655 + L3 LINE CR1 1031 1117 -460 339 288 170 28 chr12 95118838 95119050 -49163439 - MIR SINE MIR 0 262 21 211 340 103 26 chr12 95119122 95119278 -49163211 + L3 LINE CR1 1221 1388 -189 1999 83 13 23 chr12 95119325 95119627 -49162862 + L1MA1 LINE L1 6000 6298 -4 22 0 0 0 chr12 95119627 95119649 -49162840 + AT_rich Low_complexity Low_complexity 1 22 0 205 315 135 0 chr12 95120052 95120141 -49162348 + MIR SINE MIR 2 102 -160 633 314 11 0 chr12 95120474 95120649 -49161840 + MIR SINE MIR 9 185 -77 187 229 0 0 chr12 95120717 95120752 -49161737 - L2 LINE L2 -40 3232 3198 253 226 32 0 chr12 95120757 95120819 -49161670 + (TTATA)n Simple_repeat Simple_repeat 2 65 0 237 220 20 0 chr12 95120820 95120870 -49161619 + L2 LINE L2 3172 3222 -91 745 159 16 0 chr12 95120934 95121051 -49161438 + FLAM_C SINE Alu 5 126 -186 342 0 0 0 chr12 95121051 95121089 -49161400 + (TAA)n Simple_repeat Simple_repeat 2 39 0 232 320 124 21 chr12 95121158 95121255 -49161234 - L2 LINE L2 -183 3089 2983 205 242 106 30 chr12 95121648 95121714 -49160775 + L2 LINE L2 3203 3273 -40 303 281 116 25 chr12 95121808 95121929 -49160560 - MIR SINE MIR 0 262 131 609 287 20 0 chr12 95121932 95122127 -49160362 - L2 LINE L2 -1 3312 3114 223 50 75 0 chr12 95122127 95122167 -49160322 + (TATAA)n Simple_repeat Simple_repeat 1 43 0 914 279 14 11 chr12 95122178 95122465 -49160024 - LTR16A LTR ERVL -125 325 38 427 250 105 32 chr12 95122489 95122613 -49159876 + L2 LINE L2 3181 3313 0 325 226 70 0 chr12 95122620 95122735 -49159754 - Charlie7 DNA MER1_type -111 2501 2379 1959 159 10 45 chr12 95122833 95123230 -49159259 + MLT1B LTR MaLR 1 383 -7 814 281 95 48 chr12 95123275 95123916 -49158573 - Charlie7 DNA MER1_type -1937 675 5 2020 161 38 29 chr12 95124687 95125104 -49157385 - L1PA16 LINE L1 -2 6164 5744 1073 183 40 0 chr12 95125106 95125330 -49157159 + L1 LINE L1 4077 4309 -1837 231 224 53 13 chr12 95125544 95125620 -49156869 + MIR SINE MIR 120 198 -64 305 247 11 45 chr12 95125948 95126037 -49156452 - MIR SINE MIR -89 173 88 1728 155 0 0 chr12 95127134 95127392 -49155097 - AluJb SINE Alu -54 258 1 364 177 0 0 chr12 95127519 95127581 -49154908 - U7 snRNA snRNA -1 62 1 272 296 64 48 chr12 95127581 95127706 -49154783 - MIR SINE MIR -59 149 23 23 0 0 0 chr12 95128080 95128103 -49154386 + AT_rich Low_complexity Low_complexity 1 23 0 2120 123 7 7 chr12 95129092 95129393 -49153096 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr12 95129540 95129563 -49152926 + AT_rich Low_complexity Low_complexity 1 23 0 330 339 65 11 chr12 95130123 95130309 -49152180 + L2 LINE L2 2854 3049 -223 447 241 41 41 chr12 95130398 95130568 -49151921 - MER104 DNA Tc2 -8 172 3 276 298 99 61 chr12 95130578 95130709 -49151780 + L2 LINE L2 3137 3272 0 262 303 0 0 chr12 95130972 95131038 -49151451 + MIR3 SINE MIR 128 193 -15 1084 241 76 110 chr12 95133032 95133445 -49149044 + L1ME3A LINE L1 5488 5913 -257 2401 53 0 0 chr12 95133445 95133749 -49148740 - AluY SINE Alu 0 304 1 1084 241 76 110 chr12 95133749 95134009 -49148480 + L1ME3A LINE L1 5913 6141 -29 2010 191 85 39 chr12 95134009 95134082 -49148407 - MLT2B2 LTR ERVL 0 515 447 426 39 0 0 chr12 95134082 95134134 -49148355 + (CA)n Simple_repeat Simple_repeat 2 53 0 2010 191 85 39 chr12 95134134 95134552 -49147937 - MLT2B2 LTR ERVL -68 447 1 810 85 0 0 chr12 95134980 95135086 -49147403 + AluY SINE Alu 205 310 -1 1967 135 7 0 chr12 95135575 95135857 -49146632 - AluSx SINE Alu -7 305 22 335 298 50 16 chr12 95136380 95136501 -49145988 + L2 LINE L2 2537 2661 -653 224 366 142 8 chr12 95136945 95137079 -49145410 + L2 LINE L2 3121 3272 0 2551 68 0 3 chr12 95137323 95137632 -49144857 - AluY SINE Alu -3 308 1 220 308 0 13 chr12 95137800 95137878 -49144611 + MIR SINE MIR 75 151 -111 2366 97 0 0 chr12 95138394 95138705 -49143784 + AluY SINE Alu 1 311 0 236 229 121 12 chr12 95139383 95139466 -49143023 + LTR67 LTR ERVL 437 528 -29 306 219 29 0 chr12 95140281 95140386 -49142103 + CT-rich Low_complexity Low_complexity 2 109 0 2259 107 0 3 chr12 95140454 95140753 -49141736 - AluSq SINE Alu -15 298 1 2213 98 0 7 chr12 95140955 95141261 -49141228 - AluSx SINE Alu 0 304 1 209 314 57 57 chr12 95142057 95142181 -49140308 - L2 LINE L2 -1 3312 3189 320 85 43 0 chr12 95142378 95142425 -49140064 + AluSc SINE Alu 238 286 -13 363 73 0 0 chr12 95142425 95142480 -49140009 + (TA)n Simple_repeat Simple_repeat 1 55 0 189 0 0 0 chr12 95143067 95143088 -49139401 + (T)n Simple_repeat Simple_repeat 1 21 0 722 217 99 0 chr12 95143146 95143298 -49139191 + L1PB4 LINE L1 5951 6117 -39 626 307 4 9 chr12 95143305 95143530 -49138959 - LTR16B LTR ERVL -34 430 207 318 237 0 82 chr12 95143592 95143689 -49138800 - LTR16B LTR ERVL -375 89 1 452 114 29 14 chr12 95143718 95143788 -49138701 + MLT1A2 LTR MaLR 1 71 -303 2331 95 0 3 chr12 95144790 95145094 -49137395 + AluSg SINE Alu 1 303 -7 2111 121 0 20 chr12 95145163 95145468 -49137021 + AluSx SINE Alu 1 299 -13 2457 70 0 0 chr12 95146058 95146357 -49136132 - AluSc SINE Alu -10 299 1 371 309 78 15 chr12 95147116 95147320 -49135169 + L2 LINE L2 2445 2661 -653 211 366 142 8 chr12 95147764 95147898 -49134591 + L2 LINE L2 3121 3272 0 2290 100 0 6 chr12 95148142 95148453 -49134036 - AluSx SINE Alu -3 309 1 260 150 0 0 chr12 95148453 95148493 -49133996 + Charlie8 DNA MER1_type 123 162 -2255 21 0 0 0 chr12 95148509 95148530 -49133959 + AT_rich Low_complexity Low_complexity 1 21 0 247 253 10 71 chr12 95149141 95149240 -49133249 + MLT1J LTR MaLR 108 200 -311 1630 174 7 20 chr12 95149344 95149642 -49132847 - AluJo SINE Alu -18 294 1 1290 119 0 0 chr12 95149788 95149956 -49132533 - AluSx SINE Alu -144 168 1 590 153 12 0 chr12 95150251 95150336 -49132153 - AluS SINE Alu -226 87 2 2036 108 0 45 chr12 95150518 95150832 -49131657 + AluSc SINE Alu 1 300 -9 1365 232 75 40 chr12 95151157 95151610 -49130879 + L1MC4 LINE L1 7355 7823 -219 681 256 23 12 chr12 95152187 95152359 -49130130 - MER5B DNA MER1_type -3 175 2 858 145 0 0 chr12 95153128 95153245 -49129244 + AluJo/FLAM SINE Alu 1 117 -195 681 168 0 0 chr12 95153247 95153354 -49129135 - FLAM_C SINE Alu -8 135 29 204 40 0 0 chr12 95153364 95153389 -49129100 + (CAA)n Simple_repeat Simple_repeat 3 27 0 888 195 0 0 chr12 95153392 95153551 -49128938 + FRAM SINE Alu 1 154 -22 255 227 0 0 chr12 95153551 95153595 -49128894 + L2 LINE L2 3211 3254 -18 227 189 0 0 chr12 95153562 95153599 -49128890 + MIR SINE MIR 218 254 -8 * 1042 238 116 48 chr12 95153693 95154219 -49128270 + L1MC5 LINE L1 6970 7531 -430 254 315 65 26 chr12 95154278 95154510 -49127979 + L1ME3A LINE L1 5925 6165 -5 213 94 0 0 chr12 95154613 95154645 -49127844 + (TATATG)n Simple_repeat Simple_repeat 4 35 0 355 271 93 9 chr12 95154701 95154808 -49127681 - MIR SINE MIR -30 232 117 799 233 41 0 chr12 95156910 95157082 -49125407 - MER5A DNA MER1_type -8 181 3 22 0 0 0 chr12 95157225 95157247 -49125242 + AT_rich Low_complexity Low_complexity 1 22 0 1362 236 158 54 chr12 95157280 95157649 -49124840 + L2 LINE L2 2247 2576 -737 2539 142 55 14 chr12 95157649 95158064 -49124425 - MSTB1 LTR MaLR 0 432 1 1362 236 158 54 chr12 95158064 95158503 -49123986 + L2 LINE L2 2576 3150 -163 1614 186 71 21 chr12 95159035 95159374 -49123115 - MER93b LTR ERV1 -17 356 1 737 236 124 23 chr12 95159730 95159988 -49122501 + MER102b DNA MER1_type 33 316 -25 296 264 124 16 chr12 95160374 95160495 -49121994 + L2 LINE L2 3180 3313 0 379 304 206 5 chr12 95160670 95160884 -49121605 + MIR SINE MIR 6 262 0 2505 71 0 3 chr12 95160891 95161199 -49121290 - AluY SINE Alu -4 307 1 204 320 0 13 chr12 95161367 95161445 -49121044 + MIR SINE MIR 75 151 -111 2349 100 0 0 chr12 95161961 95162272 -49120217 + AluY SINE Alu 1 311 0 273 193 133 24 chr12 95162950 95163033 -49119456 + LTR67 LTR ERVL 437 528 -29 306 219 29 0 chr12 95163851 95163956 -49118533 + CT-rich Low_complexity Low_complexity 2 109 0 2346 101 0 0 chr12 95164024 95164322 -49118167 - AluSq SINE Alu -15 298 1 333 239 257 9 chr12 95164328 95164437 -49118052 - L2 LINE L2 0 3272 3137 341 166 134 26 chr12 95164791 95164885 -49117604 - MIR SINE MIR -62 146 45 1590 189 0 7 chr12 95165360 95165635 -49116854 + AluJo SINE Alu 1 273 -39 180 0 0 0 chr12 95165637 95165657 -49116832 + (TC)n Simple_repeat Simple_repeat 2 21 0 810 314 12 8 chr12 95165736 95165991 -49116498 - MIR SINE MIR 0 262 7 201 250 59 29 chr12 95166021 95166089 -49116400 - MIR3 SINE MIR -51 157 88 213 231 0 0 chr12 95166488 95166540 -49115949 + T-rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr12 95167426 95167450 -49115039 + AT_rich Low_complexity Low_complexity 1 24 0 2171 198 45 35 chr12 95168314 95168824 -49113665 + L1MC3 LINE L1 7271 7785 0 2068 132 0 0 chr12 95168830 95169118 -49113371 + AluJb SINE Alu 17 304 -8 473 333 26 11 chr12 95169805 95169994 -49112495 + MIR SINE MIR 61 252 -10 24 0 0 0 chr12 95170216 95170240 -49112249 + AT_rich Low_complexity Low_complexity 1 24 0 243 61 0 0 chr12 95171046 95171079 -49111410 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1683 157 0 25 chr12 95171080 95171360 -49111129 - AluJb SINE Alu -33 279 7 225 261 81 43 chr12 95171398 95171517 -49110972 - L1ME4a LINE L1 -16 6105 5977 2279 106 0 10 chr12 95171517 95171829 -49110660 - AluSc SINE Alu 0 309 1 225 261 81 43 chr12 95171829 95171870 -49110619 - L1ME4a LINE L1 -144 5977 5939 334 315 75 39 chr12 95171878 95172237 -49110252 - L1ME4a LINE L1 -54 6067 5696 2276 78 3 0 chr12 95172251 95172559 -49109930 - AluSp SINE Alu 0 309 1 2137 113 7 0 chr12 95172879 95173170 -49109319 - AluSx SINE Alu -19 293 1 556 303 83 25 chr12 95174409 95174650 -49107839 - L2 LINE L2 -28 3244 2990 2398 88 0 7 chr12 95176355 95176661 -49105828 + AluSc SINE Alu 1 304 -5 188 315 79 22 chr12 95176824 95176913 -49105576 + L2 LINE L2 3197 3290 -23 214 216 95 19 chr12 95177369 95177461 -49105028 - MIR3 SINE MIR -5 203 101 181 255 43 0 chr12 95177491 95177538 -49104951 - L2 LINE L2 -93 3220 3172 519 245 224 64 chr12 95177590 95177824 -49104665 - MER96B DNA MER1_type? -1 416 221 2221 101 0 0 chr12 95177824 95178133 -49104356 + AluSg SINE Alu 1 309 0 519 245 224 64 chr12 95178133 95178239 -49104250 - MER96B DNA MER1_type? -196 221 19 2336 75 0 0 chr12 95178821 95179134 -49103355 + AluY SINE Alu 1 313 0 319 289 33 25 chr12 95179217 95179338 -49103151 + MER91C DNA MER1_type 15 136 -4 183 129 0 0 chr12 95179557 95179588 -49102901 + (TG)n Simple_repeat Simple_repeat 2 32 0 2218 124 0 3 chr12 95179666 95179972 -49102517 + AluSg SINE Alu 1 305 -5 1112 261 80 81 chr12 95179972 95180124 -49102365 - L2 LINE L2 -1461 1853 1702 771 192 0 0 chr12 95180124 95180254 -49102235 - FLAM_A SINE Alu -3 130 1 1112 261 80 81 chr12 95180254 95180644 -49101845 - L2 LINE L2 -1612 1702 1258 1865 137 63 0 chr12 95180688 95180958 -49101531 - AluSx SINE Alu -25 287 1 385 279 109 12 chr12 95181000 95181165 -49101324 + L1ME LINE L1 5592 5772 -349 2169 109 0 3 chr12 95181342 95181635 -49100854 + AluSc SINE Alu 1 292 -17 1287 137 176 31 chr12 95181647 95181902 -49100587 + AluSg SINE Alu 1 292 -18 704 197 6 27 chr12 95181912 95182095 -49100394 + L1PA14 LINE L1 5792 5970 -191 180 0 0 0 chr12 95182945 95182965 -49099524 + (T)n Simple_repeat Simple_repeat 1 20 0 722 217 99 0 chr12 95183023 95183175 -49099314 + L1PB4 LINE L1 5951 6117 -39 626 307 4 9 chr12 95183182 95183407 -49099082 - LTR16B LTR ERVL -34 430 207 318 237 0 82 chr12 95183469 95183566 -49098923 - LTR16B LTR ERVL -375 89 1 452 114 29 14 chr12 95183595 95183665 -49098824 + MLT1A2 LTR MaLR 1 71 -303 1758 162 28 3 chr12 95184667 95184957 -49097532 + AluSx SINE Alu 1 297 -15 1240 196 20 8 chr12 95185112 95185357 -49097132 - MLT1E1 LTR MaLR -406 248 1 22 0 0 0 chr12 95185670 95185692 -49096797 + AT_rich Low_complexity Low_complexity 1 22 0 2253 88 14 14 chr12 95185700 95185996 -49096493 + AluSp SINE Alu 1 296 -17 219 114 0 0 chr12 95185996 95186031 -49096458 + (TA)n Simple_repeat Simple_repeat 2 36 0 192 40 0 0 chr12 95186141 95186166 -49096323 + (TG)n Simple_repeat Simple_repeat 2 26 0 640 296 133 49 chr12 95186368 95186948 -49095541 - L2 LINE L2 -5 3308 2668 24 0 0 0 chr12 95187152 95187176 -49095313 + AT_rich Low_complexity Low_complexity 1 24 0 2275 80 0 0 chr12 95187343 95187619 -49094870 + AluSc SINE Alu 1 276 -33 21 71 0 0 chr12 95187651 95187693 -49094796 + AT_rich Low_complexity Low_complexity 1 42 0 314 29 0 0 chr12 95187897 95187932 -49094557 + U2 snRNA snRNA 1 35 -153 1005 73 0 0 chr12 95188605 95188729 -49093760 + AluY SINE Alu 174 297 -14 268 244 114 106 chr12 95188766 95189126 -49093363 + L1ME4a LINE L1 784 1149 -4970 2016 123 7 0 chr12 95189126 95189402 -49093087 + AluSx SINE Alu 28 305 -7 268 244 114 106 chr12 95189402 95189446 -49093043 + L1ME4a LINE L1 1149 1191 -4928 593 315 64 17 chr12 95189473 95189771 -49092718 + L1ME4a LINE L1 4018 4329 -1800 5933 161 18 20 chr12 95189795 95191840 -49090649 + L1MA6 LINE L1 4257 6299 -1 1996 262 63 28 chr12 95191927 95193352 -49089137 + L1ME4a LINE L1 4462 5938 -215 1250 204 22 41 chr12 95193803 95194072 -49088417 + AluJo SINE Alu 1 264 -48 201 39 0 0 chr12 95194082 95194108 -49088381 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 366 23 0 0 chr12 95194201 95194244 -49088245 + (TG)n Simple_repeat Simple_repeat 2 44 0 333 0 0 0 chr12 95194243 95194280 -49088209 + (TA)n Simple_repeat Simple_repeat 1 37 0 * 21 0 0 0 chr12 95194280 95194301 -49088188 + AT_rich Low_complexity Low_complexity 1 21 0 2261 93 23 0 chr12 95194314 95194615 -49087874 + AluSq SINE Alu 1 308 -5 2405 79 3 7 chr12 95195039 95195344 -49087145 + AluSp SINE Alu 5 308 -5 641 245 159 10 chr12 95195660 95195868 -49086621 + MIR SINE MIR 9 247 -15 230 94 0 0 chr12 95196178 95196210 -49086279 + L1ME4a LINE L1 5991 6022 -82 199 211 158 0 chr12 95196354 95196411 -49086078 + MIR SINE MIR 104 169 -93 310 29 0 0 chr12 95196603 95196638 -49085851 + U2 snRNA snRNA 1 35 -153 316 215 74 37 chr12 95197415 95197550 -49084939 + L1ME4a LINE L1 5743 5882 -239 260 319 0 25 chr12 95198002 95198121 -49084368 + GA-rich Low_complexity Low_complexity 5 120 0 578 361 4 28 chr12 95199303 95199558 -49082931 - L2 LINE L2 -235 3078 2830 1856 104 0 0 chr12 95200013 95200253 -49082236 + AluSx SINE Alu 56 295 -17 773 48 19 0 chr12 95200253 95200358 -49082131 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 964 218 122 27 chr12 95200859 95201121 -49081368 + MLT1I LTR MaLR 123 409 0 1437 184 31 14 chr12 95202060 95202190 -49080299 + AluJb SINE Alu 1 127 -185 225 0 0 0 chr12 95202190 95202215 -49080274 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 1437 184 31 14 chr12 95202215 95202378 -49080111 + AluJb SINE Alu 127 299 -13 2283 104 0 0 chr12 95202408 95202717 -49079772 - AluY SINE Alu -2 309 1 209 314 57 57 chr12 95202856 95202980 -49079509 + L2 LINE L2 3189 3312 -1 2193 98 0 7 chr12 95203776 95204082 -49078407 + AluSx SINE Alu 1 304 0 189 298 35 35 chr12 95204235 95204283 -49078206 - L2 LINE L2 -8 3305 3255 2284 94 0 7 chr12 95204283 95204581 -49077908 + AluSx SINE Alu 1 296 -16 424 319 32 21 chr12 95204956 95205144 -49077345 - L2 LINE L2 0 3313 3124 231 36 0 0 chr12 95205230 95205258 -49077231 + (CA)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr12 95208977 95209006 -49073483 + AT_rich Low_complexity Low_complexity 1 29 0 2275 50 0 0 chr12 95209150 95209410 -49073079 - AluY SINE Alu -13 298 39 338 297 45 45 chr12 95209671 95209826 -49072663 + MER103 DNA DNA 3 157 -9 256 241 0 0 chr12 95210493 95210547 -49071942 - MLT1G LTR MaLR 0 590 537 545 266 67 67 chr12 95211640 95211669 -49070820 - MLT1H LTR MaLR -229 320 292 2266 84 19 10 chr12 95211669 95211977 -49070512 - AluSp SINE Alu -1 312 2 545 266 67 67 chr12 95211977 95212263 -49070226 - MLT1H LTR MaLR -256 293 5 468 241 26 0 chr12 95212305 95212421 -49070068 + MLT1H LTR MaLR 431 549 0 693 151 50 0 chr12 95212754 95212873 -49069616 + MSTD LTR MaLR 272 396 0 408 270 64 52 chr12 95213248 95213416 -49069073 + MIR3 SINE MIR 12 181 -27 553 332 68 4 chr12 95213471 95213706 -49068783 + MIR SINE MIR 2 251 -11 205 222 19 0 chr12 95214469 95214523 -49067966 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 493 328 66 0 chr12 95214830 95215013 -49067476 - MER115 DNA AcHobo -496 197 3 657 36 0 0 chr12 95215371 95215455 -49067034 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 4845 205 63 4 chr12 95216011 95216993 -49065496 + MER45B DNA AcHobo 1 1040 0 1151 255 139 20 chr12 95217094 95217632 -49064857 + L2 LINE L2 2712 3312 -1 237 289 20 86 chr12 95217842 95217994 -49064495 + MIR SINE MIR 65 206 -56 24 0 0 0 chr12 95218885 95218909 -49063580 + AT_rich Low_complexity Low_complexity 1 24 0 313 276 95 19 chr12 95219527 95219632 -49062857 + MIR SINE MIR 79 191 -71 195 114 0 0 chr12 95219891 95219926 -49062563 + (TC)n Simple_repeat Simple_repeat 1 35 0 273 278 148 57 chr12 95220333 95220509 -49061980 + MIR SINE MIR 57 248 -14 336 284 105 60 chr12 95220983 95221363 -49061126 + L1ME4a LINE L1 5568 5964 -157 1819 89 6 112 chr12 95221447 95221761 -49060728 - AluSx SINE Alu -15 297 17 2615 220 35 22 chr12 95221916 95222611 -49059878 + L1M4 LINE L1 2449 3152 -2994 316 273 0 0 chr12 95222873 95222950 -49059539 - MER2 DNA MER2_type 0 345 269 1352 166 0 5 chr12 95222960 95223183 -49059306 + AluJb SINE Alu 1 222 -90 188 132 0 26 chr12 95223187 95223225 -49059264 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 1346 125 5 28 chr12 95223226 95223442 -49059047 - MER2 DNA MER2_type -134 211 1 1866 151 3 26 chr12 95223490 95223801 -49058688 + AluJb SINE Alu 1 304 -8 377 294 206 10 chr12 95223890 95224084 -49058405 - MIR SINE MIR -26 236 5 253 211 39 0 chr12 95224219 95224271 -49058218 - L2 LINE L2 -215 3057 3004 288 313 70 0 chr12 95224305 95224420 -49058069 - MIR SINE MIR -72 190 68 1633 183 40 0 chr12 95224726 95225026 -49057463 + AluJb SINE Alu 1 312 0 561 52 0 0 chr12 95225047 95225124 -49057365 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 21 0 0 0 chr12 95225160 95225181 -49057308 + AT_rich Low_complexity Low_complexity 1 21 0 183 0 135 0 chr12 95225739 95225776 -49056713 + T-rich Low_complexity Low_complexity 5 46 0 225 0 0 0 chr12 95226735 95226760 -49055729 + (CA)n Simple_repeat Simple_repeat 2 26 0 298 268 0 37 chr12 95226843 95226925 -49055564 - MIR3 SINE MIR -16 192 114 450 305 46 8 chr12 95227011 95227142 -49055347 + MIR SINE MIR 20 155 -107 254 295 66 25 chr12 95227161 95227283 -49055206 + LTR48 LTR ERV1 159 285 -502 466 224 73 56 chr12 95227334 95227593 -49054896 + MER34 LTR ERV1 425 542 0 893 282 56 0 chr12 95227594 95227828 -49054661 - MIR SINE MIR -6 256 10 188 277 69 20 chr12 95227828 95227929 -49054560 + MIR SINE MIR 150 255 -7 2239 107 7 7 chr12 95228432 95228732 -49053757 + AluSx SINE Alu 1 300 -12 383 269 18 90 chr12 95228734 95228901 -49053588 + MIR SINE MIR 23 177 -85 1796 154 0 74 chr12 95228956 95229041 -49053448 + AluSx SINE Alu 3 93 -219 2726 42 0 0 chr12 95229041 95229352 -49053137 + AluY SINE Alu 1 311 0 1796 154 0 74 chr12 95229352 95229591 -49052898 + AluSx SINE Alu 93 303 -9 778 242 64 23 chr12 95229751 95229970 -49052519 - MIR SINE MIR -28 234 7 607 260 18 85 chr12 95230176 95230399 -49052090 - MIR SINE MIR -40 222 15 231 282 19 68 chr12 95231776 95231879 -49050610 + MER5A DNA MER1_type 17 114 -75 357 276 138 0 chr12 95231879 95232031 -49050458 - MLT1K LTR MaLR -274 314 142 488 303 139 52 chr12 95232075 95232118 -49050371 + MLT1J LTR MaLR 26 64 -447 456 139 13 0 chr12 95232118 95232197 -49050292 + MADE1 DNA Mariner 1 80 0 488 303 139 52 chr12 95232197 95232599 -49049890 + MLT1J LTR MaLR 64 510 -1 189 150 50 0 chr12 95232957 95232997 -49049492 + MIR SINE MIR 102 143 -119 295 217 208 19 chr12 95233051 95233157 -49049332 + MER91C DNA MER1_type 2 127 -13 947 283 63 30 chr12 95233202 95233832 -49048657 + L1ME2 LINE L1 5224 5873 -297 25 31 0 0 chr12 95233841 95233873 -49048616 + AT_rich Low_complexity Low_complexity 1 32 0 2450 74 0 0 chr12 95233902 95234200 -49048289 - AluSc SINE Alu -11 298 1 1381 243 199 26 chr12 95234409 95234588 -49047901 + MLT1G1 LTR MaLR 1 148 -447 180 0 0 0 chr12 95234588 95234608 -49047881 + (TC)n Simple_repeat Simple_repeat 2 21 0 1381 243 199 26 chr12 95234608 95234935 -49047554 + MLT1G1 LTR MaLR 148 595 0 222 228 18 0 chr12 95236381 95236438 -49046051 + MIR SINE MIR 91 148 -114 543 189 196 14 chr12 95236599 95236747 -49045742 + MIR SINE MIR 85 259 -3 321 380 0 23 chr12 95236846 95236975 -49045514 - MIR SINE MIR -57 151 26 208 250 0 0 chr12 95238113 95238157 -49044332 + A-rich Low_complexity Low_complexity 3 46 0 318 351 18 12 chr12 95246358 95246523 -49035966 + MIR SINE MIR 28 193 -69 316 193 93 43 chr12 95247485 95247625 -49034864 - L2 LINE L2 -50 3263 3117 300 53 0 0 chr12 95248030 95248068 -49034421 + (TG)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr12 95248140 95248162 -49034327 + AT_rich Low_complexity Low_complexity 1 22 0 551 264 90 15 chr12 95250269 95250470 -49032019 + MIR SINE MIR 15 230 -32 1870 158 30 7 chr12 95250492 95250503 -49031986 - AluSx SINE Alu -2 310 301 201 74 0 0 chr12 95250503 95250530 -49031959 + (CA)n Simple_repeat Simple_repeat 2 28 0 1870 158 30 7 chr12 95250530 95250821 -49031668 - AluSx SINE Alu -11 301 1 2320 68 0 62 chr12 95251665 95251987 -49030502 + AluY SINE Alu 1 302 -9 1930 204 168 12 chr12 95252111 95252600 -49029889 - MLT1E2 LTR MaLR -57 569 5 471 190 61 74 chr12 95252602 95252765 -49029724 + L1ME2 LINE L1 5976 6136 -26 785 205 86 0 chr12 95253002 95253153 -49029336 - MER21B LTR ERV1 -372 491 328 2305 88 3 19 chr12 95253285 95253592 -49028897 - AluSp SINE Alu -11 302 1 476 275 7 29 chr12 95254066 95254204 -49028285 - MER5B DNA MER1_type -38 140 6 244 237 127 69 chr12 95254293 95254466 -49028023 - MER5A DNA MER1_type 0 189 7 275 330 109 47 chr12 95255162 95255438 -49027051 - L2 LINE L2 -425 2889 2597 1811 230 54 52 chr12 95257470 95258022 -49024467 - L1MC/D LINE L1 -749 5397 5260 1783 143 14 21 chr12 95258448 95258727 -49023762 + AluJo SINE Alu 1 277 -35 1694 139 84 15 chr12 95258727 95258999 -49023490 - AluSx SINE Alu -20 292 1 701 144 8 0 chr12 95259014 95259146 -49023343 + GA-rich Low_complexity Low_complexity 3 135 0 202 239 0 0 chr12 95260764 95260810 -49021679 + T-rich Low_complexity Low_complexity 1 46 0 276 228 228 20 chr12 95262957 95263106 -49019383 + MIR SINE MIR 33 212 -50 391 284 43 0 chr12 95263467 95263608 -49018881 + MIR SINE MIR 116 262 0 199 301 14 41 chr12 95263735 95263808 -49018681 - L2 LINE L2 0 3272 3202 2310 110 0 3 chr12 95264757 95265066 -49017423 + AluSq SINE Alu 1 308 -5 2142 122 0 7 chr12 95266055 95266358 -49016131 + AluSx SINE Alu 3 303 -9 2504 67 0 0 chr12 95266708 95267007 -49015482 - AluSc SINE Alu -10 299 1 326 313 82 5 chr12 95267764 95267959 -49014530 + L2 LINE L2 2445 2654 -660 2581 68 0 3 chr12 95268790 95269099 -49013390 - AluY SINE Alu -3 308 1 195 308 0 13 chr12 95269267 95269345 -49013144 + MIR SINE MIR 75 151 -111 2401 97 0 0 chr12 95269861 95270172 -49012317 + AluY SINE Alu 1 311 0 271 193 133 24 chr12 95270850 95270933 -49011556 + LTR67 LTR ERVL 437 528 -29 306 219 29 0 chr12 95271751 95271856 -49010633 + CT-rich Low_complexity Low_complexity 2 109 0 2367 101 0 0 chr12 95271924 95272222 -49010267 - AluSq SINE Alu -15 298 1 294 239 257 9 chr12 95272228 95272337 -49010152 - L2 LINE L2 0 3272 3137 317 168 134 26 chr12 95272691 95272787 -49009702 - MIR SINE MIR -62 146 43 1606 189 0 7 chr12 95273259 95273534 -49008955 + AluJo SINE Alu 1 273 -39 180 0 0 0 chr12 95273536 95273556 -49008933 + (TC)n Simple_repeat Simple_repeat 2 21 0 724 318 12 8 chr12 95273635 95273890 -49008599 - MIR SINE MIR 0 262 7 204 235 0 0 chr12 95274387 95274438 -49008051 + T-rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr12 95275324 95275349 -49007140 + AT_rich Low_complexity Low_complexity 1 25 0 2150 198 45 35 chr12 95276213 95276723 -49005766 + L1MC3 LINE L1 7271 7785 0 2089 132 0 0 chr12 95276729 95277018 -49005471 + AluJb SINE Alu 17 305 -7 425 333 26 11 chr12 95277705 95277894 -49004595 + MIR SINE MIR 61 252 -10 24 0 0 0 chr12 95278116 95278140 -49004349 + AT_rich Low_complexity Low_complexity 1 24 0 243 61 0 0 chr12 95278946 95278979 -49003510 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1706 157 0 29 chr12 95278980 95279261 -49003228 - AluJb SINE Alu -33 279 7 2300 106 0 10 chr12 95279418 95279730 -49002759 - AluSc SINE Alu 0 309 1 281 315 78 42 chr12 95279779 95280138 -49002351 - L1ME4a LINE L1 -54 6067 5696 2303 78 3 0 chr12 95280152 95280460 -49002029 - AluSp SINE Alu 0 309 1 2162 113 7 0 chr12 95280780 95281071 -49001418 - AluSx SINE Alu -19 293 1 490 290 83 28 chr12 95282310 95282527 -48999962 - L2 LINE L2 -28 3244 3016 2426 88 0 7 chr12 95284256 95284563 -48997926 + AluSc SINE Alu 1 305 -4 196 227 60 0 chr12 95285295 95285363 -48997126 - MIR3 SINE MIR -32 176 101 358 247 65 0 chr12 95285492 95285585 -48996904 - MER96B DNA MER1_type? -1 416 318 * 927 164 57 93 chr12 95285555 95285726 -48996763 + MER96B DNA MER1_type? 130 291 -126 2204 101 3 0 chr12 95285726 95286034 -48996455 + AluSg SINE Alu 1 309 0 927 164 57 93 chr12 95286034 95286140 -48996349 + MER96B DNA MER1_type? 291 399 -18 2365 75 0 0 chr12 95286722 95287035 -48995454 + AluY SINE Alu 1 313 0 282 289 33 25 chr12 95287118 95287239 -48995250 - MER91C DNA MER1_type -14 126 5 183 129 0 0 chr12 95287458 95287489 -48995000 + (TG)n Simple_repeat Simple_repeat 2 32 0 2233 124 0 3 chr12 95287567 95287873 -48994616 + AluSg SINE Alu 1 305 -5 977 253 88 88 chr12 95287873 95288025 -48994464 - L2 LINE L2 -1461 1853 1702 719 192 0 0 chr12 95288025 95288155 -48994334 - FLAM_A SINE Alu -3 130 1 977 253 88 88 chr12 95288155 95288489 -48994000 - L2 LINE L2 -1611 1703 1367 1885 137 63 0 chr12 95288589 95288859 -48993630 - AluSx SINE Alu -25 287 1 376 289 108 13 chr12 95288865 95289066 -48993423 + L1ME LINE L1 5553 5772 -349 2391 93 0 3 chr12 95289243 95289544 -48992945 + AluSc SINE Alu 1 300 -9 2112 217 73 49 chr12 95289869 95290319 -48992170 + L1MC4 LINE L1 6126 6016 -226 2391 69 7 26 chr12 95290319 95290625 -48991864 - AluY SINE Alu -11 300 1 2112 217 73 49 chr12 95290625 95290859 -48991630 + L1MC4 LINE L1 6015 6242 0 1713 189 0 10 chr12 95291012 95291303 -48991186 - AluJo SINE Alu -24 288 1 246 258 110 58 chr12 95291938 95292093 -48990396 - MLT1K LTR MaLR -91 497 335 255 261 14 29 chr12 95292173 95292242 -48990247 - MLT1L LTR MaLR -417 198 131 2265 98 10 3 chr12 95292502 95292809 -48989680 + AluSc SINE Alu 1 309 0 297 51 0 0 chr12 95293687 95293726 -48988763 + (CA)n Simple_repeat Simple_repeat 1 39 0 2508 95 11 0 chr12 95293734 95294091 -48988398 - L1PA14 LINE L1 -9 6152 5792 2587 113 13 0 chr12 95294091 95294113 -48988376 - L1PA14 LINE L1 -10 6151 5769 1322 133 176 31 chr12 95294101 95294356 -48988133 - AluSg SINE Alu -18 292 1 2214 109 3 0 chr12 95294368 95294662 -48987827 - AluSx SINE Alu -17 295 1 348 293 165 25 chr12 95295032 95295206 -48987283 - L3 LINE CR1 -81 1496 1277 2296 104 3 0 chr12 95295206 95295504 -48986985 + AluSp SINE Alu 1 299 -14 348 293 165 25 chr12 95295504 95295571 -48986918 - L3 LINE CR1 -300 1277 1221 226 246 15 15 chr12 95296177 95296242 -48986247 - L3 LINE CR1 -335 1242 1178 1310 113 0 0 chr12 95296716 95296884 -48985605 + AluSx SINE Alu 1 168 -144 1653 174 7 20 chr12 95297030 95297328 -48985161 + AluJo SINE Alu 1 294 -18 226 288 0 0 chr12 95297458 95297531 -48984958 - MLT1J2 LTR MaLR -308 142 70 21 0 0 0 chr12 95298142 95298163 -48984326 + AT_rich Low_complexity Low_complexity 1 21 0 239 150 0 0 chr12 95298179 95298219 -48984270 - Charlie8 DNA MER1_type -2255 162 123 2225 102 0 10 chr12 95298219 95298532 -48983957 + AluSx SINE Alu 1 310 -2 1977 123 0 18 chr12 95298608 95298893 -48983596 - AluSx SINE Alu -32 280 1 281 226 118 54 chr12 95298907 95299000 -48983489 - Charlie8 DNA MER1_type -2316 101 3 6885 57 6 3 chr12 95299163 95299842 -48982647 - L1PA7 LINE L1 -1 6153 5478 2484 53 0 7 chr12 95299842 95300142 -48982347 - AluY SINE Alu -13 298 1 6885 57 6 3 chr12 95300142 95300888 -48981601 - L1PA7 LINE L1 -676 5478 4744 10054 96 2 7 chr12 95300892 95301753 -48980736 + L1P LINE L1 3221 4074 -2072 2532 52 3 3 chr12 95301753 95302060 -48980429 + AluY SINE Alu 1 307 -4 10054 96 2 7 chr12 95302060 95302713 -48979776 + L1P LINE L1 4074 4728 -1418 261 119 0 0 chr12 95303685 95303727 -48978762 + (T)n Simple_repeat Simple_repeat 1 42 0 2274 88 10 3 chr12 95303752 95304046 -48978443 + AluSx SINE Alu 1 296 -16 707 99 0 9 chr12 95304163 95304274 -48978215 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 1748 154 0 4 chr12 95304281 95304554 -48977935 - AluSq SINE Alu -41 272 1 1692 181 30 13 chr12 95304554 95304852 -48977637 - AluJo SINE Alu -9 303 1 2149 110 0 3 chr12 95305219 95305548 -48976941 - AluSx SINE Alu 0 328 1 2610 46 0 0 chr12 95306717 95307024 -48975465 + AluY SINE Alu 1 307 -4 419 307 184 5 chr12 95307031 95307249 -48975240 - MIR SINE MIR 0 262 6 298 264 124 16 chr12 95307424 95307545 -48974944 - L2 LINE L2 0 3313 3180 630 244 124 23 chr12 95307931 95308189 -48974300 - MER102b DNA MER1_type -25 316 33 1462 186 71 21 chr12 95308545 95308884 -48973605 + MER93b LTR ERV1 1 356 -17 1334 237 158 54 chr12 95309416 95309855 -48972634 - L2 LINE L2 -163 3150 2758 2345 142 55 14 chr12 95309855 95310270 -48972219 + MSTB1 LTR MaLR 1 432 0 1334 237 158 54 chr12 95310270 95310639 -48971850 - L2 LINE L2 -555 2758 2247 22 0 0 0 chr12 95310672 95310694 -48971795 + AT_rich Low_complexity Low_complexity 1 22 0 798 233 41 0 chr12 95310837 95311009 -48971480 + MER5A DNA MER1_type 3 181 -8 356 271 93 9 chr12 95313112 95313219 -48969270 + MIR SINE MIR 117 232 -30 213 94 0 0 chr12 95313275 95313307 -48969182 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 401 315 65 26 chr12 95313411 95313643 -48968846 - L1ME3A LINE L1 -5 6165 5925 806 238 116 48 chr12 95313702 95314228 -48968261 - L1MC5 LINE L1 -430 7531 6970 226 189 0 0 chr12 95314322 95314359 -48968130 - MIR SINE MIR -8 254 218 * 257 227 0 0 chr12 95314326 95314370 -48968119 - L2 LINE L2 -18 3254 3211 896 195 0 0 chr12 95314370 95314529 -48967960 - FRAM SINE Alu -22 154 1 204 40 0 0 chr12 95314532 95314557 -48967932 + (TTG)n Simple_repeat Simple_repeat 3 27 0 658 159 0 0 chr12 95314567 95314674 -48967815 + FLAM_C SINE Alu 29 135 -8 863 145 0 0 chr12 95314676 95314793 -48967696 - AluJo/FLAM SINE Alu -195 117 1 589 262 23 12 chr12 95315562 95315734 -48966755 + MER5B DNA MER1_type 2 175 -3 4077 142 25 21 chr12 95317056 95317784 -48964705 + L1MB4 LINE L1 5450 6180 0 2572 210 18 21 chr12 95317803 95317901 -48964588 + L1M4 LINE L1 4343 4440 -1706 2224 114 14 0 chr12 95317901 95318198 -48964291 + AluSx SINE Alu 1 301 -11 2572 210 18 21 chr12 95318198 95318765 -48963724 + L1M4 LINE L1 4440 5006 -1140 1718 168 0 34 chr12 95318766 95319058 -48963431 + AluJo SINE Alu 1 282 -30 225 0 0 0 chr12 95319061 95319086 -48963403 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 331 277 197 48 chr12 95319581 95319891 -48962598 + L2 LINE L2 2943 3298 -15 2398 75 0 0 chr12 95319919 95320211 -48962278 - AluY SINE Alu -19 292 1 331 329 0 0 chr12 95321293 95321375 -48961114 - L2 LINE L2 -49 3223 3142 250 322 175 42 chr12 95322049 95322192 -48960297 + L2 LINE L2 3107 3268 -4 371 397 0 7 chr12 95322640 95322781 -48959708 + L3 LINE CR1 1435 1574 -3 297 75 0 0 chr12 95322790 95322830 -48959659 + (CA)n Simple_repeat Simple_repeat 2 41 0 480 240 90 55 chr12 95323017 95323091 -48959398 - L2 LINE L2 -3 3310 3240 2292 170 83 37 chr12 95323091 95323457 -48959032 - MLT1D LTR MaLR 0 505 110 2125 109 19 19 chr12 95323457 95323769 -48958720 + AluSx SINE Alu 1 312 0 2292 170 83 37 chr12 95323769 95323885 -48958604 - MLT1D LTR MaLR -395 110 1 480 240 90 55 chr12 95323885 95324010 -48958479 - L2 LINE L2 -73 3240 3104 1435 246 201 17 chr12 95324040 95324747 -48957742 - L2 LINE L2 -931 2383 1547 636 314 187 0 chr12 95324748 95325079 -48957410 - L2 LINE L2 -2080 1234 842 21 0 0 0 chr12 95326439 95326460 -48956029 + AT_rich Low_complexity Low_complexity 1 21 0 2328 118 0 0 chr12 95326532 95326836 -48955653 - AluSx SINE Alu -8 304 1 2203 126 0 25 chr12 95327289 95327606 -48954883 - AluSc SINE Alu 0 309 1 2207 134 0 10 chr12 95327788 95328102 -48954387 + AluSx SINE Alu 2 312 0 633 339 66 20 chr12 95328302 95328694 -48953795 + L2 LINE L2 2394 2803 -511 189 273 45 0 chr12 95329064 95329108 -48953381 + L2 LINE L2 3221 3266 -6 2247 87 3 19 chr12 95329121 95329430 -48953059 + AluSx SINE Alu 1 304 -8 966 329 137 24 chr12 95329442 95329531 -48952958 + L2 LINE L2 1796 1873 -1441 2358 46 0 0 chr12 95329531 95329841 -48952648 + AluY SINE Alu 1 310 0 966 329 137 24 chr12 95329841 95330515 -48951974 + L2 LINE L2 1873 2647 -667 222 300 86 57 chr12 95330572 95330778 -48951711 + L2 LINE L2 2804 3015 -257 610 229 133 5 chr12 95330778 95330941 -48951548 - MER5A DNA MER1_type 0 189 4 2087 113 7 7 chr12 95330944 95331260 -48951229 - AluSx SINE Alu 0 316 1 221 160 100 20 chr12 95331274 95331324 -48951165 + L2 LINE L2 3007 3060 -212 355 84 22 0 chr12 95331948 95332009 -48950480 + AluSp SINE Alu 86 137 -166 38928 65 9 2 chr12 95332012 95338065 -48944424 + L1PA5 LINE L1 11 6102 -52 29 0 0 0 chr12 95339064 95339093 -48943396 + AT_rich Low_complexity Low_complexity 1 29 0 749 176 0 37 chr12 95339513 95339649 -48942840 + FLAM_C SINE Alu 1 131 -2 446 174 35 0 chr12 95340745 95340860 -48941629 + L1MA8 LINE L1 6173 6291 0 323 281 95 25 chr12 95340899 95341184 -48941305 + L1M4 LINE L1 4513 4817 -1329 2189 130 0 0 chr12 95341562 95341861 -48940628 - AluSg SINE Alu -11 299 1 24 0 0 0 chr12 95342063 95342087 -48940402 + AT_rich Low_complexity Low_complexity 1 24 0 256 281 12 0 chr12 95342119 95342201 -48940288 - L1ME LINE L1 -396 5725 5643 486 205 192 26 chr12 95342206 95342440 -48940049 - LTR50 LTR ERVL 0 795 523 1155 228 18 7 chr12 95345611 95345892 -48936597 + L2 LINE L2 2480 2763 -551 486 248 104 62 chr12 95345917 95346224 -48936265 + L2 LINE L2 2946 3265 -48 2175 128 0 10 chr12 95346409 95346721 -48935768 + AluSx SINE Alu 3 311 -1 351 0 0 0 chr12 95347362 95347401 -48935088 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1927 133 0 0 chr12 95347412 95347676 -48934813 - AluSx SINE Alu -48 264 1 180 0 0 0 chr12 95348963 95348983 -48933506 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 367 192 26 0 chr12 95349029 95349107 -48933382 + MER116 DNA Mariner 1 80 0 249 220 0 0 chr12 95349637 95349687 -48932802 - L2 LINE L2 -4 3268 3219 22 35 0 0 chr12 95349705 95349734 -48932755 + AT_rich Low_complexity Low_complexity 1 29 0 1601 30 0 5 chr12 95350582 95350779 -48931710 + L1PA4 LINE L1 5960 6155 0 386 294 66 20 chr12 95351193 95351390 -48931099 + L1ME3A LINE L1 3713 3918 -2228 * 509 296 164 21 chr12 95351389 95351724 -48930765 + L1ME3A LINE L1 4127 4509 -1637 437 283 22 59 chr12 95351866 95352138 -48930351 + L1ME3A LINE L1 5690 5951 -219 21 0 0 0 chr12 95352245 95352266 -48930223 + AT_rich Low_complexity Low_complexity 1 21 0 1376 78 122 0 chr12 95352391 95352596 -48929893 + MER30 DNA MER1_type 1 230 0 280 284 37 46 chr12 95353652 95353761 -48928728 + L3 LINE CR1 1367 1474 -103 379 336 57 8 chr12 95353884 95354006 -48928483 + L2 LINE L2 3144 3271 -1 550 266 165 0 chr12 95354029 95354217 -48928272 + MIR SINE MIR 2 220 -42 23 0 0 0 chr12 95354460 95354483 -48928006 + AT_rich Low_complexity Low_complexity 1 23 0 2391 99 0 0 chr12 95355839 95356141 -48926348 - AluSg SINE Alu -8 302 1 286 298 32 44 chr12 95358459 95358617 -48923872 + MARNA DNA Mariner 170 325 -261 26 30 0 0 chr12 95359252 95359285 -48923204 + AT_rich Low_complexity Low_complexity 1 33 0 264 358 0 0 chr12 95359600 95359681 -48922808 - L2 LINE L2 -674 2640 2560 1867 128 46 39 chr12 95360338 95360644 -48921845 + AluSx SINE Alu 1 308 -4 2022 119 19 16 chr12 95361217 95361527 -48920962 - AluSx SINE Alu -1 311 1 42 0 0 0 chr12 95361652 95361694 -48920795 + AT_rich Low_complexity Low_complexity 1 42 0 364 251 211 5 chr12 95362357 95362499 -48919990 + MIR SINE MIR 74 241 -21 2313 109 0 3 chr12 95363120 95363423 -48919066 - AluSx SINE Alu -10 302 1 21 0 0 0 chr12 95364441 95364462 -48918027 + AT_rich Low_complexity Low_complexity 1 21 0 2092 115 37 0 chr12 95364746 95365042 -48917447 + AluSx SINE Alu 3 309 -3 2302 100 0 3 chr12 95365278 95365579 -48916910 + AluSx SINE Alu 1 300 -12 723 293 42 4 chr12 95365828 95366067 -48916422 - MIR SINE MIR -7 255 8 215 256 0 0 chr12 95366242 95366285 -48916204 - L2 LINE L2 -71 3242 3200 391 293 58 37 chr12 95366308 95366496 -48915993 - L2 LINE L2 -4 3309 3118 1908 157 33 0 chr12 95367263 95367562 -48914927 - AluJb SINE Alu -3 309 1 1788 137 44 0 chr12 95367782 95368053 -48914436 + AluSx SINE Alu 1 283 -29 645 49 0 0 chr12 95368053 95368134 -48914355 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 362 281 50 22 chr12 95368365 95368504 -48913985 + MIR3 SINE MIR 45 187 -21 452 294 67 78 chr12 95368735 95369017 -48913472 + L2 LINE L2 2237 2515 -799 360 289 74 94 chr12 95369017 95369433 -48913056 + L2 LINE L2 2640 3062 -210 447 19 0 0 chr12 95369433 95369485 -48913004 + (TTCA)n Simple_repeat Simple_repeat 3 54 0 1930 128 0 31 chr12 95369485 95369774 -48912715 - AluSx SINE Alu -32 280 1 360 289 74 94 chr12 95369774 95369917 -48912572 + L2 LINE L2 3060 3257 -15 602 171 16 8 chr12 95369978 95370101 -48912388 + L1MB2 LINE L1 6041 6164 -7 302 280 124 98 chr12 95370560 95370867 -48911622 - L1ME LINE L1 -264 5857 5543 303 324 99 0 chr12 95371367 95371478 -48911011 - L1ME LINE L1 -1300 4846 4725 1524 202 0 0 chr12 95371486 95371744 -48910745 - AluJb SINE Alu -6 306 49 1894 129 13 40 chr12 95371781 95371951 -48910538 - AluSx SINE Alu -13 299 139 2476 66 7 3 chr12 95371951 95372255 -48910234 - AluY SINE Alu -6 305 1 1894 129 13 40 chr12 95372255 95372387 -48910102 - AluSx SINE Alu -173 139 5 735 65 0 0 chr12 95372427 95372519 -48909970 - AluS SINE Alu -210 102 11 485 370 15 3 chr12 95372623 95372953 -48909536 + L1MEc LINE L1 243 576 -6031 302 327 121 50 chr12 95373029 95373408 -48909081 + L1MEc LINE L1 616 1021 -5586 402 230 88 10 chr12 95373408 95373573 -48908916 + L1MEc LINE L1 841 1018 -4890 * 737 276 89 12 chr12 95373571 95373977 -48908512 + L1MEc LINE L1 1295 1731 -4876 1904 158 25 22 chr12 95374016 95374153 -48908336 - MLT1A1 LTR MaLR -2 363 228 2461 92 41 24 chr12 95374153 95374278 -48908211 + THE1C LTR MaLR 1 122 -253 1989 79 97 14 chr12 95374278 95374556 -48907933 - AluSp SINE Alu -11 302 2 2461 92 41 24 chr12 95374556 95374799 -48907690 + THE1C LTR MaLR 122 375 0 1904 158 25 22 chr12 95374799 95375023 -48907466 - MLT1A1 LTR MaLR -137 228 1 1495 236 129 19 chr12 95375024 95375699 -48906790 + L1MEc LINE L1 1767 2515 -4092 526 211 196 12 chr12 95375907 95376075 -48906414 - MIR SINE MIR -52 210 16 737 284 115 10 chr12 95377274 95377587 -48904902 + L2 LINE L2 2955 3300 -13 226 343 170 13 chr12 95377587 95377887 -48904602 - L2 LINE L2 -109 3163 2817 222 37 0 0 chr12 95378233 95378260 -48904229 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 336 64 0 0 chr12 95378259 95378306 -48904183 + (CA)n Simple_repeat Simple_repeat 1 47 0 362 300 60 33 chr12 95378319 95378469 -48904020 - MLT1K LTR MaLR -113 475 322 2178 109 3 0 chr12 95379814 95380142 -48902347 - AluSx SINE Alu 0 329 1 929 264 11 23 chr12 95380514 95380775 -48901714 - MIR SINE MIR 0 262 5 299 241 80 45 chr12 95381572 95381684 -48900805 + MIR SINE MIR 63 178 -84 2179 128 0 13 chr12 95381695 95382000 -48900489 - AluSx SINE Alu -11 301 1 666 260 184 77 chr12 95382109 95382727 -48899762 + L2 LINE L2 2412 3147 -166 1891 134 3 7 chr12 95382727 95383010 -48899479 + AluJb SINE Alu 31 312 0 666 260 184 77 chr12 95383010 95383197 -48899292 + L2 LINE L2 3147 3313 0 539 320 82 27 chr12 95383978 95384306 -48898183 + L2 LINE L2 2323 2668 -646 197 366 0 0 chr12 95384673 95384744 -48897745 + L2 LINE L2 3186 3256 -16 1647 180 6 35 chr12 95385388 95385705 -48896784 - AluJo SINE Alu -4 308 1 607 232 133 41 chr12 95385940 95386257 -48896232 + MLT1H LTR MaLR 50 432 -123 2236 90 63 51 chr12 95386971 95387111 -48895378 - MER1A DNA MER1_type -2173 529 392 2122 109 3 7 chr12 95387111 95387416 -48895073 - AluSx SINE Alu 0 304 1 2236 90 63 51 chr12 95387416 95387715 -48894774 - MER1A DNA MER1_type -2310 392 1 405 210 48 48 chr12 95387717 95387903 -48894586 + L1MC5 LINE L1 7726 7911 -50 714 187 49 148 chr12 95389122 95389513 -48892976 - L1MC4 LINE L1 -2 8040 7689 310 336 100 17 chr12 95390292 95390533 -48891956 - L2 LINE L2 -241 3072 2812 1944 110 17 0 chr12 95390576 95390866 -48891623 + L1PA16 LINE L1 5863 6157 -9 580 247 22 11 chr12 95391038 95391220 -48891269 + L1ME3A LINE L1 4910 5093 -1053 21 0 0 0 chr12 95394391 95394412 -48888077 + AT_rich Low_complexity Low_complexity 1 21 0 7111 82 22 17 chr12 95394434 95395977 -48886512 + SVA Other Other 1 1386 0 381 271 0 60 chr12 95396001 95396167 -48886322 + L1ME3A LINE L1 5122 5277 -869 866 176 0 0 chr12 95396178 95396314 -48886175 + AluJo SINE Alu 1 136 -176 1963 238 50 14 chr12 95396315 95396816 -48885673 + L1ME3A LINE L1 5272 5790 -380 871 250 7 48 chr12 95396822 95397094 -48885395 + L1ME3A LINE L1 5901 6161 -9 962 267 115 7 chr12 95397111 95397515 -48884974 - L2 LINE L2 -614 2700 2253 554 268 26 0 chr12 95397515 95397668 -48884821 + MIR SINE MIR 1 157 -105 358 230 293 0 chr12 95397761 95397983 -48884506 - L2 LINE L2 -1093 2221 1935 645 185 219 0 chr12 95397984 95398130 -48884359 - MER45A DNA AcHobo 0 178 1 1494 46 0 0 chr12 95398139 95398312 -48884177 + LTR30 LTR ERV1 2 174 -548 1299 144 43 23 chr12 95398391 95398648 -48883841 + AluJb SINE Alu 47 308 -4 3699 197 120 45 chr12 95399693 95399985 -48882504 - L1MC4 LINE L1 -436 7606 7337 2105 147 47 11 chr12 95399985 95400345 -48882144 + THE1C LTR MaLR 1 373 -2 3699 197 120 45 chr12 95400345 95401198 -48881291 - L1MC4 LINE L1 -705 7337 6375 2058 134 0 10 chr12 95401212 95401504 -48880985 - AluSx SINE Alu -23 289 1 310 314 67 31 chr12 95401831 95402025 -48880464 - L1MEc LINE L1 -6097 299 99 2025 120 23 10 chr12 95402110 95402409 -48880080 - AluSx SINE Alu -9 303 1 2084 116 31 7 chr12 95402496 95402788 -48879701 + AluSx SINE Alu 1 299 -13 1759 179 17 0 chr12 95403130 95403421 -48879068 + AluSx SINE Alu 1 296 -16 1238 207 15 19 chr12 95403834 95404095 -48878394 + AluJo SINE Alu 3 262 -50 531 265 53 16 chr12 95404096 95404285 -48878204 - MIR SINE MIR -55 207 12 272 323 0 20 chr12 95404367 95404466 -48878023 + MER5A DNA MER1_type 93 189 0 1129 163 0 0 chr12 95405018 95405190 -48877299 + MER1B DNA MER1_type 2 173 -124 427 111 63 0 chr12 95405178 95405241 -48877248 + MER1B DNA MER1_type 266 332 -1 * 289 268 122 0 chr12 95405245 95405327 -48877162 + MIR SINE MIR 63 154 -108 2229 119 131 28 chr12 95405408 95405754 -48876735 + MSTA LTR MaLR 1 393 -35 2360 110 3 0 chr12 95405754 95406063 -48876426 - AluSx SINE Alu -2 310 1 2229 119 131 28 chr12 95406063 95406104 -48876385 + MSTA LTR MaLR 393 428 0 280 348 79 15 chr12 95406181 95406448 -48876041 + L2 LINE L2 146 429 -2885 194 305 126 62 chr12 95406503 95406655 -48875834 - L2 LINE L2 -4 3309 3168 722 164 0 30 chr12 95406655 95406789 -48875700 - FLAM_A SINE Alu -3 130 1 194 305 126 62 chr12 95406789 95406993 -48875496 - L2 LINE L2 -145 3168 2930 597 298 55 4 chr12 95407536 95407771 -48874718 + L2 LINE L2 2013 2259 -1055 479 297 130 0 chr12 95407789 95407974 -48874515 + L2 LINE L2 2572 2780 -534 1325 239 140 23 chr12 95407983 95408419 -48874070 - MLT1D LTR MaLR -6 499 13 218 304 164 10 chr12 95408455 95408656 -48873833 + L2 LINE L2 2829 3060 -212 2293 120 0 0 chr12 95408706 95409007 -48873482 + AluSx SINE Alu 1 301 -11 216 321 0 71 chr12 95409098 95409210 -48873279 + L2 LINE L2 3137 3240 -32 292 79 0 0 chr12 95409460 95409498 -48872991 - MER4D LTR ERV1 -75 828 791 456 171 185 90 chr12 95409861 95410083 -48872406 - L1MB7 LINE L1 0 6184 5942 210 289 79 0 chr12 95410101 95410177 -48872312 - MIR SINE MIR -80 128 47 213 183 17 17 chr12 95411724 95411784 -48870705 + A-rich Low_complexity Low_complexity 1 60 0 2528 72 0 0 chr12 95412454 95412758 -48869731 - AluY SINE Alu -7 304 1 382 221 53 9 chr12 95412915 95413028 -48869461 - MIR3 SINE MIR -6 202 85 237 33 0 0 chr12 95413042 95413072 -48869417 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 24 53 0 0 chr12 95413667 95413705 -48868784 + AT_rich Low_complexity Low_complexity 1 38 0 214 108 0 54 chr12 95417294 95417331 -48865158 + (GGGGA)n Simple_repeat Simple_repeat 1 35 0 237 65 0 0 chr12 95417845 95417876 -48864613 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 202 304 22 89 chr12 95418579 95418714 -48863775 - MER5A DNA MER1_type -52 126 1 3773 119 35 9 chr12 95418858 95419487 -48863002 + L1MB4 LINE L1 5536 6180 0 2136 104 154 16 chr12 95419775 95420151 -48862338 + MSTA LTR MaLR 1 428 0 763 240 18 41 chr12 95420164 95420385 -48862104 - MIR SINE MIR -26 236 21 1341 40 6 29 chr12 95420386 95420561 -48861928 - AluY SINE Alu -12 299 129 525 295 102 11 chr12 95420677 95421067 -48861422 - L2 LINE L2 -172 3141 2712 4776 207 63 4 chr12 95421168 95422150 -48860339 - MER45B DNA AcHobo 0 1040 1 768 40 0 0 chr12 95422707 95422807 -48859682 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 505 328 66 0 chr12 95423165 95423348 -48859141 + MER115 DNA AcHobo 3 197 -496 205 222 19 0 chr12 95423655 95423709 -48858780 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 483 332 68 4 chr12 95424472 95424707 -48857782 - MIR SINE MIR -11 251 2 376 287 73 24 chr12 95424781 95424930 -48857559 - MIR3 SINE MIR -41 167 12 690 151 50 0 chr12 95425305 95425424 -48857065 - MSTD LTR MaLR 0 396 272 467 241 26 0 chr12 95425757 95425873 -48856616 - MLT1H LTR MaLR 0 549 431 544 263 67 67 chr12 95425915 95426201 -48856288 + MLT1H LTR MaLR 5 293 -256 2284 84 19 10 chr12 95426201 95426509 -48855980 + AluSp SINE Alu 2 312 -1 544 263 67 67 chr12 95426509 95426538 -48855951 + MLT1H LTR MaLR 292 320 -229 252 241 0 0 chr12 95427631 95427685 -48854804 + MLT1G LTR MaLR 537 590 0 323 297 45 45 chr12 95428352 95428507 -48853982 - MER103 DNA DNA -9 157 3 2195 52 0 0 chr12 95428768 95429017 -48853472 + AluY SINE Alu 39 287 -24 709 242 64 23 chr12 95429193 95429412 -48853077 - MIR SINE MIR -28 234 7 544 265 18 85 chr12 95429618 95429841 -48852648 - MIR SINE MIR -40 222 15 200 282 19 68 chr12 95431218 95431321 -48851168 + MER5A DNA MER1_type 17 114 -75 354 276 138 0 chr12 95431321 95431473 -48851016 - MLT1K LTR MaLR -274 314 142 473 303 139 52 chr12 95431517 95431560 -48850929 + MLT1J LTR MaLR 26 64 -447 429 139 13 0 chr12 95431560 95431639 -48850850 + MADE1 DNA Mariner 1 80 0 473 303 139 52 chr12 95431639 95432041 -48850448 + MLT1J LTR MaLR 64 510 -1 244 221 232 0 chr12 95432492 95432587 -48849902 + MER91C DNA MER1_type 2 118 -22 908 283 63 30 chr12 95432643 95433273 -48849216 + L1ME3A LINE L1 5224 5873 -297 25 31 0 0 chr12 95433282 95433314 -48849175 + AT_rich Low_complexity Low_complexity 1 32 0 2475 74 0 0 chr12 95433343 95433641 -48848848 - AluSc SINE Alu -11 298 1 1219 245 199 26 chr12 95433850 95434029 -48848460 + MLT1G1 LTR MaLR 1 148 -447 198 0 0 0 chr12 95434029 95434051 -48848438 + (TC)n Simple_repeat Simple_repeat 2 23 0 1219 245 199 26 chr12 95434051 95434378 -48848111 + MLT1G1 LTR MaLR 148 595 0 205 228 18 0 chr12 95435824 95435881 -48846608 + MIR SINE MIR 91 148 -114 525 176 196 14 chr12 95436042 95436190 -48846299 + MIR SINE MIR 85 259 -3 287 380 0 23 chr12 95436289 95436418 -48846071 - MIR SINE MIR -57 151 26 225 269 0 0 chr12 95437554 95437606 -48844883 + A-rich Low_complexity Low_complexity 5 56 0 361 349 42 16 chr12 95445827 95446016 -48836473 + MIR SINE MIR 28 221 -41 339 209 111 39 chr12 95446954 95447107 -48835382 - L2 LINE L2 -50 3263 3100 300 53 0 0 chr12 95447499 95447537 -48834952 + (TG)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr12 95447609 95447631 -48834858 + AT_rich Low_complexity Low_complexity 1 22 0 180 329 29 14 chr12 95449505 95449575 -48832914 - MIR SINE MIR -73 189 119 611 264 90 15 chr12 95449737 95449938 -48832551 + MIR SINE MIR 15 230 -32 1933 162 10 7 chr12 95449960 95449971 -48832518 - AluSx SINE Alu -2 310 301 201 74 0 0 chr12 95449971 95449998 -48832491 + (CA)n Simple_repeat Simple_repeat 2 28 0 1933 162 10 7 chr12 95449998 95450295 -48832194 - AluSx SINE Alu -11 301 1 2315 65 0 65 chr12 95451139 95451463 -48831026 + AluY SINE Alu 1 303 -8 1941 203 168 12 chr12 95451587 95452076 -48830413 - MLT1E2 LTR MaLR -57 569 5 477 190 61 74 chr12 95452078 95452241 -48830248 + L1ME2 LINE L1 5976 6136 -26 180 295 16 0 chr12 95452259 95452320 -48830169 - MIR SINE MIR -13 249 188 784 205 86 0 chr12 95452478 95452629 -48829860 - MER21B LTR ERV1 -372 491 328 2255 91 3 19 chr12 95452760 95453067 -48829422 - AluSp SINE Alu -11 302 1 519 275 7 29 chr12 95453541 95453679 -48828810 - MER5B DNA MER1_type -38 140 6 301 237 127 69 chr12 95453768 95453941 -48828548 - MER5A DNA MER1_type 0 189 7 349 330 109 47 chr12 95454637 95454913 -48827576 - L2 LINE L2 -425 2889 2597 1766 230 58 56 chr12 95456945 95457497 -48824992 - L1MC/D LINE L1 -749 5397 5260 2081 104 0 4 chr12 95457938 95458254 -48824235 + AluSx SINE Alu 14 328 0 1654 182 30 14 chr12 95458621 95458918 -48823571 + AluJo SINE Alu 1 302 -10 1740 154 0 4 chr12 95458918 95459191 -48823298 + AluSq SINE Alu 1 272 -41 707 99 0 9 chr12 95459198 95459309 -48823180 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 2277 88 10 3 chr12 95459426 95459720 -48822769 - AluSx SINE Alu -16 296 1 252 122 0 0 chr12 95459745 95459786 -48822703 + (A)n Simple_repeat Simple_repeat 1 41 0 10842 95 2 7 chr12 95460758 95461411 -48821078 - L1P LINE L1 -1418 4728 4074 2554 55 3 3 chr12 95461411 95461719 -48820770 - AluY SINE Alu -3 308 1 10842 95 2 7 chr12 95461719 95462578 -48819911 - L1P LINE L1 -2072 4074 3223 7248 60 7 23 chr12 95462579 95463330 -48819159 + L1PA7 LINE L1 4739 5463 -691 2489 57 0 7 chr12 95463330 95463630 -48818859 + AluY SINE Alu 1 298 -13 7248 60 7 23 chr12 95463630 95464310 -48818179 + L1PA7 LINE L1 5463 6153 -1 319 226 118 54 chr12 95464473 95464566 -48817923 + Charlie8 DNA MER1_type 3 101 -2316 561 178 0 0 chr12 95464581 95464671 -48817818 + AluS SINE Alu 2 91 -222 187 219 0 0 chr12 95465060 95465101 -48817388 + L2 LINE L2 3214 3254 -18 237 33 0 0 chr12 95465103 95465133 -48817356 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 417 221 53 9 chr12 95465147 95465260 -48817229 + MIR3 SINE MIR 85 202 -6 2557 65 0 0 chr12 95465417 95465727 -48816762 + AluY SINE Alu 1 310 -1 471 224 270 0 chr12 95465739 95465913 -48816576 + L2 LINE L2 3093 3313 0 327 285 193 48 chr12 95466379 95466695 -48815794 - L2 LINE L2 -9 3304 2943 216 0 0 0 chr12 95467191 95467215 -48815274 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1888 127 0 25 chr12 95467218 95467501 -48814988 - AluJo SINE Alu -30 282 7 254 250 130 0 chr12 95467539 95467639 -48814850 - L1ME4a LINE L1 -16 6105 5993 711 284 115 10 chr12 95468318 95468631 -48813858 + L2 LINE L2 2955 3300 -13 200 329 173 20 chr12 95468631 95468932 -48813557 - L2 LINE L2 -109 3163 2817 1053 181 31 39 chr12 95469255 95469509 -48812980 - L1MA4A LINE L1 -270 6033 5782 269 170 0 0 chr12 95469529 95469576 -48812913 + MER4B-int LTR ERV1 1150 1196 -5562 373 88 0 35 chr12 95469583 95469640 -48812849 - L1MA4A LINE L1 -498 5793 5739 681 205 54 12 chr12 95469885 95470051 -48812438 + L1MB7 LINE L1 5959 6131 -53 680 221 72 44 chr12 95470060 95470241 -48812248 - MER5A DNA MER1_type 0 189 4 1025 132 29 86 chr12 95470269 95470288 -48812201 + L1MB3 LINE L1 5953 5972 -211 2428 90 3 0 chr12 95470288 95470598 -48811891 + AluSx SINE Alu 1 311 -1 1025 132 29 86 chr12 95470598 95470821 -48811668 + L1MB3 LINE L1 5972 6181 -2 206 238 0 0 chr12 95471029 95471071 -48811418 + L2 LINE L2 2939 2980 -333 387 0 0 0 chr12 95471324 95471367 -48811122 + (A)n Simple_repeat Simple_repeat 1 43 0 215 179 26 0 chr12 95471634 95471673 -48810816 + L2 LINE L2 3010 3049 -264 2161 137 3 29 chr12 95471677 95472020 -48810469 - MER1B DNA MER1_type -5 334 1 236 326 85 23 chr12 95472097 95472226 -48810263 + L2 LINE L2 2939 3075 -238 3585 156 84 57 chr12 95472254 95473064 -48809425 + L1MB7 LINE L1 5310 6141 -43 456 226 104 0 chr12 95473187 95473302 -48809187 + L2 LINE L2 3185 3311 -2 2344 81 3 7 chr12 95473565 95473863 -48808626 - AluSc SINE Alu -12 297 1 808 245 33 62 chr12 95474142 95474415 -48808074 - MLT1I LTR MaLR 0 409 145 1032 196 0 22 chr12 95474734 95474913 -48807576 - FAM SINE Alu 0 175 1 23 0 0 0 chr12 95474918 95474941 -48807548 + AT_rich Low_complexity Low_complexity 1 23 0 1089 189 36 0 chr12 95475694 95475890 -48806599 + MER20 DNA MER1_type 2 204 -15 302 186 17 0 chr12 95475907 95475966 -48806523 + MIR SINE MIR 197 256 -6 1899 151 3 28 chr12 95476205 95476522 -48805967 + AluSx SINE Alu 1 309 -3 321 360 37 12 chr12 95476762 95476926 -48805563 - MIR3 SINE MIR -28 180 13 214 342 13 13 chr12 95477053 95477132 -48805357 - L2 LINE L2 -6 3307 3229 265 226 10 69 chr12 95477249 95477351 -48805138 - MER53 DNA DNA -93 96 1 560 269 34 56 chr12 95477354 95477588 -48804901 - Charlie8 DNA MER1_type -2149 268 40 1408 269 90 15 chr12 95480328 95480796 -48801693 - LTR33 LTR ERVL -18 503 1 188 324 84 0 chr12 95481148 95481219 -48801270 - MIR SINE MIR -66 196 120 273 272 97 18 chr12 95481514 95481628 -48800861 + MIR SINE MIR 36 158 -104 253 331 69 6 chr12 95481910 95482070 -48800419 + MER117 DNA MER1_type 1 170 -27 464 244 11 0 chr12 95482163 95482253 -48800236 - MER81 DNA DNA 0 114 24 843 261 146 35 chr12 95482497 95482923 -48799566 - LTR33 LTR ERVL -19 502 30 395 343 61 0 chr12 95483193 95483391 -48799098 - ERVL LTR ERVL -432 5332 5123 2086 310 78 12 chr12 95483716 95484259 -48798230 - ERVL LTR ERVL -994 4660 4038 2232 154 22 19 chr12 95484259 95484623 -48797866 - MLT1A1 LTR MaLR 0 365 1 2086 310 78 12 chr12 95484623 95484940 -48797549 - ERVL LTR ERVL -1616 4038 3743 572 244 18 12 chr12 95485628 95485792 -48796697 + L1ME3A LINE L1 6006 6170 0 726 119 171 28 chr12 95486283 95486459 -48796030 - AluY SINE Alu -109 202 2 23 0 0 0 chr12 95487272 95487295 -48795194 + AT_rich Low_complexity Low_complexity 1 23 0 514 200 0 0 chr12 95487300 95487385 -48795104 - FLAM_A SINE Alu -45 97 13 501 333 6 6 chr12 95487537 95487699 -48794790 + MER5A DNA MER1_type 28 189 0 303 338 35 14 chr12 95488080 95488225 -48794264 + L2 LINE L2 3165 3312 -1 894 132 28 0 chr12 95488326 95488470 -48794019 - L1MA4A LINE L1 -7 6296 6149 1048 125 7 7 chr12 95488625 95488777 -48793712 + AluSg/x SINE Alu 129 280 -32 2281 100 0 6 chr12 95488853 95489164 -48793325 - AluSx SINE Alu -3 309 1 260 150 0 0 chr12 95489164 95489204 -48793285 + Charlie8 DNA MER1_type 123 162 -2255 21 0 0 0 chr12 95489220 95489241 -48793248 + AT_rich Low_complexity Low_complexity 1 21 0 247 253 10 71 chr12 95489852 95489951 -48792538 + MLT1J LTR MaLR 108 200 -311 1381 182 24 40 chr12 95490055 95490352 -48792137 - AluJo SINE Alu -18 294 3 22 35 0 0 chr12 95490440 95490469 -48792020 + AT_rich Low_complexity Low_complexity 1 29 0 2043 280 127 33 chr12 95490756 95491883 -48790606 - L2 LINE L2 -26 3287 2058 243 158 0 105 chr12 95492020 95492077 -48790412 + L2 LINE L2 3259 3309 -4 765 297 74 43 chr12 95492296 95492713 -48789776 + L2 LINE L2 2884 3313 0 342 318 26 32 chr12 95494028 95494182 -48788307 + L1ME1 LINE L1 1 153 -6387 910 264 129 56 chr12 95494873 95495370 -48787119 + L1ME1 LINE L1 923 1455 -5088 2221 131 0 3 chr12 95495370 95495676 -48786813 + AluSg SINE Alu 1 305 -5 760 253 113 19 chr12 95495679 95496043 -48786446 + L1ME1 LINE L1 1933 2330 -4210 1484 219 80 109 chr12 95496045 95496318 -48786171 + L1ME1 LINE L1 3354 3633 -2907 2186 112 10 0 chr12 95496318 95496613 -48785876 + AluSp SINE Alu 1 298 -15 1484 219 80 109 chr12 95496613 95497295 -48785194 + L1ME1 LINE L1 3633 4281 -2259 * 2948 214 41 38 chr12 95497291 95498169 -48784320 + L1ME1 LINE L1 5374 6252 -308 2413 124 22 0 chr12 95498169 95498525 -48783964 - THE1B LTR MaLR 0 364 1 2948 214 41 38 chr12 95498525 95498759 -48783730 + L1ME1 LINE L1 6252 6484 -76 1234 197 98 0 chr12 95498813 95499067 -48783422 + AluJo SINE Alu 1 279 -33 2118 130 3 0 chr12 95499143 95499443 -48783046 - AluSx SINE Alu -11 301 1 216 0 0 0 chr12 95499981 95500005 -48782484 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1912 138 34 10 chr12 95500454 95500752 -48781737 + AluSx SINE Alu 1 305 -7 258 310 56 99 chr12 95501477 95501546 -48780943 + MIR SINE MIR 15 76 -186 1387 186 9 75 chr12 95501546 95501864 -48780625 - AluJo SINE Alu -15 297 1 258 310 56 99 chr12 95501864 95501936 -48780553 + MIR SINE MIR 76 150 -112 311 257 110 37 chr12 95501948 95502084 -48780405 + L2 LINE L2 2699 2844 -470 533 257 157 72 chr12 95502088 95502465 -48780024 - L2 LINE L2 0 3313 2905 482 296 65 27 chr12 95502735 95502921 -48779568 - MIR SINE MIR -26 236 44 337 211 67 0 chr12 95503055 95503145 -48779344 - HsTC2 DNA Tc2 -9 1889 1794 210 238 0 62 chr12 95503303 95503383 -48779106 + CT-rich Low_complexity Low_complexity 5 79 0 397 281 207 33 chr12 95503702 95503877 -48778612 + MLT1K LTR MaLR 98 328 -260 1584 158 158 10 chr12 95503877 95504180 -48778309 + MER7A DNA MER2_type 1 346 0 397 281 207 33 chr12 95504180 95504246 -48778243 + MLT1K LTR MaLR 328 381 -207 270 211 266 18 chr12 95504272 95504381 -48778108 + MLT1K LTR MaLR 453 588 0 409 283 10 0 chr12 95504439 95504538 -48777951 + L2 LINE L2 3168 3267 -5 204 348 34 0 chr12 95504729 95504818 -48777671 + L2 LINE L2 2599 2690 -624 1399 154 5 5 chr12 95504845 95505066 -48777423 - AluJb SINE Alu -6 306 86 27 0 0 0 chr12 95505071 95505098 -48777391 + AT_rich Low_complexity Low_complexity 1 27 0 863 217 6 0 chr12 95505098 95505255 -48777234 - AluJo SINE Alu -149 163 6 586 318 53 27 chr12 95505259 95505589 -48776900 + L2 LINE L2 2713 3057 -215 1841 151 49 0 chr12 95505603 95505887 -48776602 - AluSq SINE Alu -15 298 1 371 267 114 35 chr12 95506033 95506232 -48776257 - MER110 LTR ERV1 -61 407 166 291 219 110 73 chr12 95506298 95506462 -48776027 - MER110A LTR ERV1 -298 170 1 380 322 132 0 chr12 95506532 95506653 -48775836 + L2 LINE L2 3134 3270 -2 25 0 0 0 chr12 95506876 95506901 -48775588 + AT_rich Low_complexity Low_complexity 1 25 0 1783 167 51 59 chr12 95506955 95507344 -48775145 - MLT1B LTR MaLR -2 388 3 478 266 36 0 chr12 95507464 95507603 -48774886 - MIR SINE MIR -1 261 118 1068 247 50 36 chr12 95507639 95508077 -48774412 + MER110A LTR ERV1 70 491 0 27 0 0 26 chr12 95508439 95508461 -48774028 + AT_rich Low_complexity Low_complexity 1 23 -14 2266 86 21 0 chr12 95508461 95508752 -48773737 - AluSp SINE Alu -16 297 1 27 0 0 26 chr12 95508752 95508767 -48773722 + AT_rich Low_complexity Low_complexity 23 37 0 465 299 44 0 chr12 95508803 95508940 -48773549 + MIR SINE MIR 70 212 -50 311 248 92 28 chr12 95509602 95509711 -48772778 - MIR SINE MIR -8 254 139 307 318 80 28 chr12 95510979 95511155 -48771334 + LTR33 LTR ERVL 31 215 -306 297 0 0 0 chr12 95511800 95511833 -48770656 + (CA)n Simple_repeat Simple_repeat 1 33 0 266 183 33 0 chr12 95511840 95511900 -48770589 + MLT1K LTR MaLR 525 586 -2 248 247 182 0 chr12 95511930 95512007 -48770482 - MIR SINE MIR -13 249 159 2421 116 32 3 chr12 95512570 95512948 -48769541 - L1PA10 LINE L1 -1 6167 5779 295 245 51 51 chr12 95513275 95513373 -48769116 - MIR SINE MIR -154 108 11 763 298 57 57 chr12 95513449 95513888 -48768601 + LTR16B LTR ERVL 4 442 -22 183 303 66 26 chr12 95513894 95513970 -48768519 + L2 LINE L2 3199 3277 -36 335 353 26 13 chr12 95514107 95514263 -48768226 - MER5A DNA MER1_type -25 164 7 2055 132 3 7 chr12 95514681 95514984 -48767505 - AluSc SINE Alu -7 302 1 292 271 248 8 chr12 95515304 95515433 -48767056 + MIR SINE MIR 99 258 -4 1379 133 60 11 chr12 95516964 95517249 -48765240 + Charlie5 DNA MER1_type 2321 2619 0 186 71 0 0 chr12 95517851 95517879 -48764610 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 2147 117 0 0 chr12 95520124 95520443 -48762046 - AluSx SINE Alu 0 321 3 216 338 103 14 chr12 95521126 95521240 -48761249 + MIR SINE MIR 47 167 -70 333 260 253 43 chr12 95521414 95521695 -48760794 - Charlie8 DNA MER1_type -2019 398 59 2218 85 20 0 chr12 95521817 95522110 -48760379 - AluSx SINE Alu -13 299 1 338 224 100 69 chr12 95522161 95522341 -48760148 - MIR SINE MIR -24 238 54 248 217 67 0 chr12 95522549 95522609 -48759880 - L2 LINE L2 0 3272 3209 1279 141 207 8 chr12 95523132 95523374 -48759115 - AluSx SINE Alu -22 290 1 231 239 15 30 chr12 95523385 95523452 -48759037 + MER94 DNA DNA 67 132 -2 232 214 54 0 chr12 95523464 95523520 -48758969 + L3 LINE CR1 1168 1226 -351 2206 90 13 3 chr12 95523599 95523899 -48758590 - AluSq SINE Alu -10 303 1 277 293 94 9 chr12 95523952 95524058 -48758431 + MIR SINE MIR 2 116 -146 2551 59 0 0 chr12 95524614 95524919 -48757570 + AluY SINE Alu 1 305 -6 255 61 0 0 chr12 95525052 95525085 -48757404 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1295 161 12 45 chr12 95525095 95525338 -48757151 + AluJo SINE Alu 1 235 -77 578 223 46 29 chr12 95525468 95525643 -48756846 + MER5B DNA MER1_type 1 178 0 22 0 0 0 chr12 95526305 95526327 -48756162 + GC_rich Low_complexity Low_complexity 1 22 0 357 353 108 18 chr12 95526866 95527144 -48755345 - L3 LINE CR1 -651 926 624 2045 105 39 3 chr12 95527755 95528040 -48754449 + AluSc SINE Alu 1 295 -14 521 296 150 5 chr12 95528641 95528861 -48753628 + MIR SINE MIR 2 253 -9 1160 180 90 22 chr12 95529298 95529473 -48753016 - AluJo SINE Alu -4 298 96 189 0 0 0 chr12 95529473 95529494 -48752995 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1160 180 90 22 chr12 95529494 95529596 -48752893 - AluJo SINE Alu -206 96 2 439 245 234 23 chr12 95531412 95531561 -48750928 - MIR3 SINE MIR -21 187 3 191 36 36 0 chr12 95532793 95532821 -48749668 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr12 95533344 95533368 -48749121 + AT_rich Low_complexity Low_complexity 1 24 0 290 291 82 37 chr12 95535159 95535293 -48747196 - MIR3 SINE MIR -39 169 30 1022 252 9 5 chr12 95536272 95536494 -48745995 - MER58A DNA MER1_type 0 224 2 807 278 155 8 chr12 95537426 95537954 -48744535 + L1MC4 LINE L1 7437 8042 0 269 347 0 0 chr12 95538144 95538219 -48744270 + L2 LINE L2 3004 3078 -194 187 271 21 0 chr12 95538304 95538352 -48744137 + L2 LINE L2 3256 3304 -9 206 42 0 0 chr12 95539238 95539262 -48743227 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr12 95540908 95540936 -48741553 + AT_rich Low_complexity Low_complexity 1 28 0 291 229 214 38 chr12 95541169 95541300 -48741189 - MIR3 SINE MIR -38 170 17 2442 73 0 0 chr12 95541831 95542131 -48740358 - AluSq SINE Alu -13 300 1 24 85 0 0 chr12 95542635 95542694 -48739795 + AT_rich Low_complexity Low_complexity 1 59 0 825 161 0 23 chr12 95543332 95543462 -48739027 + FLAM_C SINE Alu 1 127 -16 22 0 0 0 chr12 95543860 95543882 -48738607 + AT_rich Low_complexity Low_complexity 1 22 0 441 328 23 23 chr12 95544655 95544826 -48737663 - MIR3 SINE MIR -24 184 14 746 268 13 25 chr12 95546016 95546251 -48736238 + HAL1 LINE L1 144 375 -2132 603 186 238 48 chr12 95546251 95546499 -48735990 + L1ME3A LINE L1 5721 6015 -155 1640 229 68 93 chr12 95546517 95546542 -48735947 + HAL1 LINE L1 1656 1680 -827 1515 220 49 26 chr12 95546542 95546929 -48735560 + MSTD LTR MaLR 1 396 0 1640 229 68 93 chr12 95546929 95547754 -48734735 + HAL1 LINE L1 1680 2506 -1 2121 112 10 16 chr12 95547857 95548160 -48734329 - AluSx SINE Alu -11 301 1 229 309 48 12 chr12 95548471 95548555 -48733934 + L2 LINE L2 2766 2852 -462 210 294 59 20 chr12 95548628 95548730 -48733759 + L2 LINE L2 3000 3105 -167 24 32 0 0 chr12 95548841 95548872 -48733617 + AT_rich Low_complexity Low_complexity 1 31 0 1038 149 12 12 chr12 95549021 95549189 -48733300 + MER2 DNA MER2_type 178 345 0 1977 123 3 27 chr12 95549460 95549760 -48732729 - AluSx SINE Alu -19 293 1 887 251 110 10 chr12 95550388 95550687 -48731802 - MER46C DNA MER2_type -7 331 3 22 0 0 0 chr12 95550864 95550886 -48731603 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr12 95551149 95551176 -48731313 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 21 36 0 0 chr12 95551422 95551450 -48731039 + AT_rich Low_complexity Low_complexity 1 28 0 791 242 39 0 chr12 95551869 95552051 -48730438 + MER5A DNA MER1_type 1 189 0 236 257 53 71 chr12 95553231 95553344 -48729145 + L2 LINE L2 2422 2532 -782 485 274 115 9 chr12 95553652 95553878 -48728611 - MER102b DNA MER1_type 0 341 92 1870 168 3 3 chr12 95554273 95554565 -48727924 - AluSx SINE Alu -20 292 1 262 209 163 23 chr12 95554719 95554805 -48727684 - L2 LINE L2 -3 3269 3172 1010 150 12 12 chr12 95555465 95555638 -48726851 + FAM SINE Alu 1 173 -2 184 233 244 0 chr12 95555964 95556054 -48726435 + L2 LINE L2 2242 2353 -961 612 304 209 11 chr12 95556061 95556528 -48725961 + L2 LINE L2 2489 3042 -271 263 258 196 10 chr12 95556755 95556852 -48725637 + L2 LINE L2 3180 3294 -19 214 321 22 73 chr12 95556893 95557030 -48725459 + L2 LINE L2 2932 3061 -211 268 243 108 45 chr12 95557181 95557292 -48725197 + MIR SINE MIR 131 248 -14 254 224 0 20 chr12 95557462 95557511 -48724978 + L2 LINE L2 3246 3293 -20 614 223 114 36 chr12 95557571 95557764 -48724725 - MER3 DNA MER1_type 0 209 2 267 345 125 6 chr12 95559851 95560019 -48722470 - MIR SINE MIR -10 252 65 25 0 0 0 chr12 95560494 95560519 -48721970 + AT_rich Low_complexity Low_complexity 1 25 0 2228 116 3 0 chr12 95560907 95561217 -48721272 + AluSx SINE Alu 1 311 -1 439 268 36 22 chr12 95561951 95562089 -48720400 + MIR SINE MIR 5 144 -118 207 300 0 0 chr12 95562405 95562455 -48720034 - MIR SINE MIR -124 84 35 22 35 0 0 chr12 95563085 95563114 -48719375 + AT_rich Low_complexity Low_complexity 1 29 0 232 177 0 81 chr12 95564249 95564311 -48718178 - MER103 DNA DNA -70 96 40 597 319 195 15 chr12 95565082 95565405 -48717084 - L2 LINE L2 -231 3082 2700 32 26 0 0 chr12 95566398 95566437 -48716052 + AT_rich Low_complexity Low_complexity 1 39 0 2138 80 25 4 chr12 95566567 95566843 -48715646 + AluSx SINE Alu 1 282 -30 2145 134 0 3 chr12 95566879 95567192 -48715297 + AluJb SINE Alu 1 312 0 22 0 0 0 chr12 95567701 95567723 -48714766 + AT_rich Low_complexity Low_complexity 1 22 0 2051 85 67 47 chr12 95568709 95569051 -48713438 + MER46B DNA MER2_type 13 236 0 239 264 0 25 chr12 95569609 95569677 -48712812 + G-rich Low_complexity Low_complexity 6 115 0 2428 97 3 0 chr12 95569698 95570009 -48712480 + AluSx SINE Alu 1 312 0 233 361 46 65 chr12 95570365 95570689 -48711800 + L3 LINE CR1 1 318 -1259 558 280 108 0 chr12 95570769 95570955 -48711534 + MIR SINE MIR 8 213 -49 448 285 192 8 chr12 95571512 95571772 -48710717 + L3 LINE CR1 672 979 -598 188 231 123 15 chr12 95571863 95571928 -48710561 + L3 LINE CR1 1441 1512 -65 233 232 18 0 chr12 95572069 95572125 -48710364 + CT-rich Low_complexity Low_complexity 1 57 0 243 79 0 0 chr12 95572334 95572372 -48710117 + (TA)n Simple_repeat Simple_repeat 2 39 0 1615 165 48 15 chr12 95572372 95572644 -48709845 - AluJo SINE Alu -26 286 6 311 315 174 28 chr12 95572693 95572906 -48709583 + MIR SINE MIR 14 257 -5 287 296 113 14 chr12 95573298 95573393 -48709096 - MIR SINE MIR -59 203 88 544 165 157 0 chr12 95573393 95573508 -48708981 - FLAM_C SINE Alu 0 133 1 287 296 113 14 chr12 95573508 95573554 -48708935 - MIR SINE MIR -174 88 48 1063 52 0 0 chr12 95574882 95575018 -48707471 - L1PA4 LINE L1 -3 6152 6017 203 283 100 0 chr12 95575861 95575921 -48706568 + MIR3 SINE MIR 120 185 -23 181 320 54 75 chr12 95576053 95576200 -48706289 + MIR3 SINE MIR 40 183 -25 391 273 62 0 chr12 95577097 95577225 -48705264 + MIR SINE MIR 89 224 -38 595 296 90 52 chr12 95577423 95577767 -48704722 - L2 LINE L2 -24 3289 2933 490 250 104 38 chr12 95577863 95578103 -48704386 - MER112 DNA MER1_type 0 256 1 871 219 146 13 chr12 95578625 95578940 -48703549 + Charlie7 DNA MER1_type 1911 2267 -345 1746 156 50 3 chr12 95578994 95579276 -48703213 - AluJo SINE Alu -17 295 1 294 230 142 0 chr12 95579276 95579424 -48703065 + Charlie7 DNA MER1_type 2441 2609 -3 491 217 142 48 chr12 95580002 95580285 -48702204 + Charlie1b DNA MER1_type 76 387 -136 705 169 128 0 chr12 95580286 95580434 -48702055 - L1MA9 LINE L1 -4 6308 6142 684 181 49 0 chr12 95580434 95580578 -48701911 + Charlie1b DNA MER1_type 373 523 0 2206 99 0 0 chr12 95580799 95581083 -48701406 + AluSx SINE Alu 1 284 -28 210 176 40 14 chr12 95581083 95581157 -48701332 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 0 0 0 chr12 95581157 95581179 -48701310 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 95581841 95581872 -48700617 + AT_rich Low_complexity Low_complexity 1 31 0 469 204 11 0 chr12 95581916 95582004 -48700485 + MER20 DNA MER1_type 2 90 -129 1865 153 137 13 chr12 95582187 95582566 -48699923 + MSTB LTR MaLR 1 426 0 1559 137 133 16 chr12 95582918 95583240 -48699249 - MER46B DNA MER2_type 0 236 2 653 201 101 25 chr12 95583510 95583669 -48698820 + MIR SINE MIR 92 262 0 503 129 0 0 chr12 95584681 95584751 -48697738 + AluS SINE Alu 1 70 -243 1732 139 0 0 chr12 95584751 95584995 -48697494 + AluSx SINE Alu 39 282 -30 186 43 0 0 chr12 95584998 95585021 -48697468 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 203 225 254 0 chr12 95585910 95585981 -48696508 + MIR SINE MIR 35 123 -85 1324 343 92 42 chr12 95586226 95587948 -48694541 - L2 LINE L2 -11 3261 1450 266 243 14 14 chr12 95588491 95588565 -48693924 + (TATG)n Simple_repeat Simple_repeat 1 74 0 2446 174 31 0 chr12 95588565 95588978 -48693511 + MSTB LTR MaLR 1 426 0 8528 188 29 4 chr12 95588978 95590590 -48691899 + MSTB-int LTR MaLR 1 1651 0 2889 138 0 5 chr12 95590590 95591018 -48691471 + MSTB LTR MaLR 1 426 0 269 296 88 72 chr12 95591244 95591369 -48691120 - L2 LINE L2 -20 3252 3126 1180 170 73 59 chr12 95592153 95592442 -48690047 - AluJb SINE Alu -9 293 1 273 240 223 25 chr12 95592633 95592754 -48689735 + MIR SINE MIR 5 149 -113 21 36 0 0 chr12 95592759 95592787 -48689702 + AT_rich Low_complexity Low_complexity 1 28 0 409 292 130 10 chr12 95592915 95593107 -48689382 + L2 LINE L2 3083 3297 -16 268 179 54 0 chr12 95593112 95593168 -48689321 + HsTC2 DNA Tc2 5 63 -1835 180 77 0 0 chr12 95593286 95593312 -48689177 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 1737 171 32 0 chr12 95593616 95593897 -48688592 - AluJo SINE Alu -16 296 7 2795 13 0 3 chr12 95594160 95594471 -48688018 - AluYb8 SINE Alu -8 310 1 28 48 0 0 chr12 95595521 95595563 -48686926 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr12 95597080 95597105 -48685384 + AT_rich Low_complexity Low_complexity 1 25 0 288 308 152 25 chr12 95597262 95597460 -48685029 - MIR SINE MIR -32 230 8 550 251 198 12 chr12 95597612 95597859 -48684630 + L2 LINE L2 3021 3313 0 760 224 44 27 chr12 95598486 95598669 -48683820 - MER5A DNA MER1_type -3 186 1 23 54 0 0 chr12 95599006 95599043 -48683446 + AT_rich Low_complexity Low_complexity 1 37 0 471 18 0 0 chr12 95599475 95599531 -48682958 + (GA)n Simple_repeat Simple_repeat 1 56 0 267 79 0 0 chr12 95600234 95600272 -48682217 + (CA)n Simple_repeat Simple_repeat 2 39 0 2393 59 23 3 chr12 95600517 95600822 -48681667 + AluY SINE Alu 1 311 0 452 346 100 66 chr12 95601026 95601497 -48680992 + L3 LINE CR1 580 1066 -511 290 227 160 25 chr12 95601510 95601629 -48680860 + MIR SINE MIR 128 262 0 194 261 72 0 chr12 95602236 95602305 -48680184 - MIR3 SINE MIR -1 207 134 234 308 211 0 chr12 95603852 95603956 -48678533 + L2 LINE L2 3121 3246 -26 354 277 109 41 chr12 95604492 95604759 -48677730 + L2 LINE L2 1797 2081 -1233 545 181 155 45 chr12 95605451 95605606 -48676883 - MER5A DNA MER1_type -1 188 17 2041 93 61 0 chr12 95605725 95606004 -48676485 - AluSc SINE Alu -13 296 1 22 0 0 0 chr12 95606240 95606262 -48676227 + AT_rich Low_complexity Low_complexity 1 22 0 195 342 60 17 chr12 95607156 95607273 -48675216 + L2 LINE L2 696 817 -2497 219 296 0 19 chr12 95608513 95608567 -48673922 - L2 LINE L2 -92 3180 3128 1187 182 0 0 chr12 95608590 95608810 -48673679 + L1 LINE L1 4468 4687 -1459 310 224 103 65 chr12 95610043 95610150 -48672339 + L2 LINE L2 3137 3247 -25 424 273 112 7 chr12 95610356 95610499 -48671990 + MIR SINE MIR 59 216 -46 31 58 0 0 chr12 95611144 95611196 -48671293 + AT_rich Low_complexity Low_complexity 1 52 0 785 164 0 0 chr12 95611304 95611438 -48671051 - L1PA16 LINE L1 -1 6165 6032 402 192 0 0 chr12 95611939 95612017 -48670472 - MER116 DNA Mariner -2 78 1 332 199 18 146 chr12 95612343 95612514 -48669975 - MIR SINE MIR -32 230 82 299 380 85 8 chr12 95612922 95613051 -48669438 + MIR3 SINE MIR 15 153 -55 1990 142 3 13 chr12 95613053 95613363 -48669126 + AluSx SINE Alu 6 312 0 335 223 116 18 chr12 95614051 95614163 -48668326 + MER103 DNA DNA 32 154 -12 354 282 13 0 chr12 95614974 95615052 -48667437 - L2 LINE L2 -52 3220 3142 189 0 0 0 chr12 95615054 95615075 -48667414 + (CAAT)n Simple_repeat Simple_repeat 3 23 0 626 212 86 13 chr12 95615519 95615670 -48666819 - MIR SINE MIR -92 170 9 213 279 38 38 chr12 95616370 95616449 -48666040 + L2 LINE L2 3235 3313 0 444 212 142 0 chr12 95617338 95617451 -48665038 - FLAM_C SINE Alu -14 129 1 234 0 0 0 chr12 95617888 95617914 -48664575 + (CCA)n Simple_repeat Simple_repeat 1 26 0 435 38 0 0 chr12 95618847 95618900 -48663589 + (CA)n Simple_repeat Simple_repeat 2 54 0 402 192 192 60 chr12 95620102 95620269 -48662220 + MER58C DNA MER1_type 27 215 0 559 302 150 50 chr12 95621352 95622004 -48660485 + HAL1b LINE L1 89 648 -700 1278 108 0 0 chr12 95622318 95622484 -48660005 - AluSg/x SINE Alu -14 298 133 274 288 126 16 chr12 95622491 95622682 -48659807 + L1MC4a LINE L1 3634 3845 -2301 1831 269 136 36 chr12 95622736 95624159 -48658330 + L1MC4a LINE L1 4019 4930 -1216 1485 253 94 27 chr12 95624159 95624709 -48657780 + MLT1G LTR MaLR 1 587 -3 1831 269 136 36 chr12 95624709 95625236 -48657253 + L1MC4a LINE L1 4930 5403 -743 488 227 44 11 chr12 95625294 95625447 -48657042 + L1MC4a LINE L1 6476 6613 -1195 257 284 27 14 chr12 95626041 95626115 -48656374 - L2 LINE L2 -239 3074 3000 990 158 88 0 chr12 95626414 95626585 -48655904 + MER5A DNA MER1_type 1 186 -3 1871 129 98 14 chr12 95626635 95626991 -48655498 + MLT1B LTR MaLR 1 386 -4 1124 110 95 15 chr12 95627883 95628083 -48654406 - MER2 DNA MER2_type 0 345 130 1609 150 75 14 chr12 95628083 95628377 -48654112 + MER7A DNA MER2_type 1 310 -36 646 144 43 93 chr12 95628377 95628516 -48653973 - MER2 DNA MER2_type -213 132 1 235 216 54 153 chr12 95629465 95629576 -48652913 + L2 LINE L2 3169 3268 -4 359 260 154 30 chr12 95629610 95629779 -48652710 + MIR3 SINE MIR 14 203 -5 583 184 15 22 chr12 95630115 95630251 -48652238 - MER53 DNA DNA 0 189 55 512 244 122 37 chr12 95631059 95631330 -48651159 - MARNA DNA Mariner -15 571 278 208 304 164 35 chr12 95632020 95632191 -48650298 + MIR SINE MIR 20 212 -50 510 218 249 36 chr12 95632831 95633161 -48649328 + HsTC2 DNA Tc2 490 889 -1009 972 170 41 18 chr12 95633236 95633407 -48649082 + MER6A DNA MER2_type 1 175 -430 * 2831 144 102 4 chr12 95633402 95633924 -48648565 + MER6A DNA MER2_type 293 605 0 2085 125 3 7 chr12 95635703 95636007 -48646482 + AluJo SINE Alu 1 303 -9 24 32 0 0 chr12 95636331 95636362 -48646127 + AT_rich Low_complexity Low_complexity 1 31 0 266 244 26 13 chr12 95637747 95637825 -48644664 + MIR SINE MIR 184 262 0 180 0 0 0 chr12 95638598 95638618 -48643871 + (T)n Simple_repeat Simple_repeat 1 20 0 1712 94 22 0 chr12 95638821 95639045 -48643444 - AluSx SINE Alu -30 282 54 230 151 38 0 chr12 95639100 95639153 -48643336 + L1ME1 LINE L1 5248 5302 -844 * 1244 203 103 44 chr12 95639142 95639567 -48642922 + L1ME1 LINE L1 5715 6160 -6 1325 257 210 23 chr12 95639630 95640272 -48642217 - HAL1 LINE L1 -1742 765 4 1749 153 0 43 chr12 95640780 95641081 -48641408 - AluJb SINE Alu -24 288 1 605 192 8 23 chr12 95642645 95642775 -48639714 - FLAM_C SINE Alu -5 128 1 253 299 60 0 chr12 95642902 95642969 -48639520 - MER91C DNA MER1_type -39 101 31 32 0 0 0 chr12 95644047 95644079 -48638410 + AT_rich Low_complexity Low_complexity 1 32 0 456 239 8 75 chr12 95644803 95644937 -48637552 + MER5A DNA MER1_type 63 187 -2 180 97 0 0 chr12 95645538 95645569 -48636920 + (A)n Simple_repeat Simple_repeat 1 31 0 232 204 41 0 chr12 95645585 95645634 -48636855 + MIR SINE MIR 156 206 -56 38 0 0 0 chr12 95649479 95649517 -48632972 + GC_rich Low_complexity Low_complexity 1 38 0 370 315 61 80 chr12 95649946 95650321 -48632168 + L1M2 LINE L1 528 895 -5954 2187 93 0 0 chr12 95652944 95653253 -48629236 + AluSc SINE Alu 1 309 0 253 289 35 26 chr12 95654296 95654410 -48628079 + MIR SINE MIR 148 262 0 2259 154 100 3 chr12 95654479 95654869 -48627620 - MSTA LTR MaLR 0 428 1 9747 172 15 7 chr12 95654874 95656506 -48625983 - MSTA-int LTR MaLR -6 1645 1 2209 191 78 0 chr12 95656506 95656903 -48625586 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr12 95656925 95656946 -48625543 + AT_rich Low_complexity Low_complexity 1 21 0 275 228 221 29 chr12 95657071 95657207 -48625282 - MLT1L LTR MaLR -4 611 450 453 239 51 36 chr12 95657331 95657469 -48625020 - MER5A DNA MER1_type -15 174 35 2884 101 5 13 chr12 95657600 95657978 -48624511 + THE1C LTR MaLR 1 375 0 1603 211 45 27 chr12 95658774 95659149 -48623340 - MLT1B LTR MaLR -6 384 3 348 314 124 58 chr12 95659286 95659523 -48622966 + L1MEd LINE L1 70 327 -5792 1879 186 36 25 chr12 95659523 95659884 -48622605 + MLT1A1 LTR MaLR 1 365 0 348 314 124 58 chr12 95659884 95659904 -48622585 + L1MEd LINE L1 327 344 -5775 368 301 77 31 chr12 95660035 95660225 -48622264 + HAL1 LINE L1 1374 1581 -926 2516 117 8 22 chr12 95660225 95660594 -48621895 + THE1B LTR MaLR 1 364 0 368 301 77 31 chr12 95660594 95660662 -48621827 + HAL1 LINE L1 1581 1644 -863 2139 97 4 4 chr12 95660709 95660987 -48621502 + AluSx SINE Alu 28 305 -7 2275 22 8 4 chr12 95661434 95661702 -48620787 + AluYa5 SINE Alu 1 269 -42 23 54 0 0 chr12 95662182 95662219 -48620270 + AT_rich Low_complexity Low_complexity 1 37 0 252 120 0 0 chr12 95662594 95662644 -48619845 + (T)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr12 95663086 95663111 -48619378 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr12 95664662 95664686 -48617803 + (CA)n Simple_repeat Simple_repeat 2 25 0 291 113 0 0 chr12 95665250 95665303 -48617186 + (TG)n Simple_repeat Simple_repeat 2 54 0 346 267 40 0 chr12 95666362 95666481 -48616008 - FLAM_A SINE Alu -13 120 7 450 0 0 0 chr12 95667889 95667939 -48614550 + (CA)n Simple_repeat Simple_repeat 2 51 0 233 238 107 0 chr12 95669609 95669693 -48612796 - AluSg SINE Alu -197 103 11 309 260 87 13 chr12 95670392 95670542 -48611947 - FRAM SINE Alu -2 164 4 414 0 0 0 chr12 95670874 95670920 -48611569 + (TG)n Simple_repeat Simple_repeat 2 47 0 638 247 16 47 chr12 95672707 95672962 -48609527 - L1MC3 LINE L1 -7 7778 7532 258 26 92 13 chr12 95673173 95673249 -48609240 - HERV17 LTR ERV1 -7803 823 742 570 29 0 0 chr12 95673480 95673548 -48608941 + (TA)n Simple_repeat Simple_repeat 2 69 0 283 277 7 58 chr12 95674701 95674838 -48607651 + AluJo SINE Alu 4 133 -169 473 161 109 98 chr12 95675055 95675229 -48607260 - FRAM SINE Alu -1 175 1 221 0 35 0 chr12 95675231 95675260 -48607229 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 246 285 113 7 chr12 95675884 95676035 -48606454 + AluJo SINE Alu 136 302 0 317 231 17 86 chr12 95676212 95676329 -48606160 - MLT1D LTR MaLR -138 367 259 336 176 0 40 chr12 95676397 95676471 -48606018 - PMER1 DNA MER1_type -19 71 1 260 98 0 118 chr12 95677632 95677683 -48604806 - PMER1 DNA MER1_type -37 53 9 1275 73 0 0 chr12 95679647 95680110 -48602379 + (TG)n Simple_repeat Simple_repeat 1 463 0 426 358 17 11 chr12 95680141 95680317 -48602172 + C-rich Low_complexity Low_complexity 4 180 0 * 496 302 11 27 chr12 95680222 95680454 -48602035 + CT-rich Low_complexity Low_complexity 1 228 0 341 341 22 0 chr12 95680385 95680523 -48601966 + T-rich Low_complexity Low_complexity 3 143 0 * 223 258 0 44 chr12 95680523 95680705 -48601784 + C-rich Low_complexity Low_complexity 5 178 0 2734 0 0 7 chr12 95681189 95681487 -48601002 + AluYa5 SINE Alu 1 296 -15 24 0 0 0 chr12 95682087 95682111 -48600378 + AT_rich Low_complexity Low_complexity 1 24 0 1802 117 0 0 chr12 95683087 95683327 -48599162 - AluSc SINE Alu -69 240 1 470 256 90 8 chr12 95684109 95684242 -48598247 + MIR SINE MIR 50 193 -69 203 0 37 0 chr12 95685205 95685232 -48597257 + (TA)n Simple_repeat Simple_repeat 2 29 0 * 288 0 0 0 chr12 95685231 95685263 -48597226 + (TG)n Simple_repeat Simple_repeat 1 32 0 201 39 0 0 chr12 95685262 95685288 -48597201 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 594 177 18 0 chr12 95685779 95685892 -48596597 + L1PA15 LINE L1 4812 4926 -1220 * 9060 172 19 6 chr12 95685886 95687619 -48594870 + L1PA13 LINE L1 3680 5429 -734 623 118 0 0 chr12 95687619 95687704 -48594785 + 5S rRNA rRNA 2 86 -35 5382 117 5 1 chr12 95687704 95688451 -48594038 + L1PA13 LINE L1 5414 6163 0 6117 123 13 2 chr12 95688490 95689736 -48592753 + L1PA15 LINE L1 4903 6159 -6 2381 39 4 0 chr12 95690083 95690401 -48592088 + AluY SINE Alu 1 319 0 357 279 90 65 chr12 95691082 95691283 -48591206 - L2 LINE L2 -557 2757 2552 283 182 26 0 chr12 95691559 95691636 -48590853 + (TA)n Simple_repeat Simple_repeat 2 80 0 260 71 48 0 chr12 95693016 95693058 -48589431 + GA-rich Low_complexity Low_complexity 2 45 0 479 292 124 0 chr12 95694193 95694371 -48588118 - MIR SINE MIR -43 219 20 757 311 43 17 chr12 95694464 95694699 -48587790 + MIR SINE MIR 12 252 -10 2279 240 99 2 chr12 95694874 95695379 -48587110 + MLT1H1 LTR MaLR 2 555 0 192 329 0 49 chr12 95695407 95695489 -48587000 - L2 LINE L2 -38 3275 3198 2188 196 5 57 chr12 95695489 95695928 -48586561 - MLT2B1 LTR ERVL 0 520 105 792 339 19 30 chr12 95695924 95696352 -48586137 + MARNA DNA Mariner 149 571 -15 * 397 330 75 45 chr12 95696536 95696803 -48585686 + L2 LINE L2 2361 2635 -679 197 352 80 0 chr12 95696784 95696872 -48585617 + L2 LINE L2 2943 3037 -235 * 534 277 143 49 chr12 95696992 95697357 -48585132 - L2 LINE L2 0 3313 2915 344 262 0 24 chr12 95697783 95697867 -48584622 + MER3 DNA MER1_type 38 119 -90 15835 138 31 16 chr12 95697867 95698841 -48583648 + L1MA3 LINE L1 1564 2522 -5202 2229 122 0 10 chr12 95698841 95699153 -48583336 + AluSx SINE Alu 1 309 -3 23 0 0 0 chr12 95699153 95699176 -48583313 + AT_rich Low_complexity Low_complexity 1 23 0 15835 138 31 16 chr12 95699176 95704023 -48578466 + L1MA3 LINE L1 2522 7491 -233 2600 44 0 0 chr12 95704023 95704320 -48578169 + AluY SINE Alu 1 297 -14 15835 138 31 16 chr12 95704320 95704558 -48577931 + L1MA3 LINE L1 7491 7724 0 750 196 138 0 chr12 95704580 95704820 -48577669 + MER33 DNA MER1_type 52 324 0 308 243 48 42 chr12 95704858 95704971 -48577518 + MLT1J2 LTR MaLR 72 286 -310 24 32 0 0 chr12 95705063 95705094 -48577395 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr12 95705352 95705383 -48577106 + AT_rich Low_complexity Low_complexity 1 31 0 1942 228 22 21 chr12 95705383 95705627 -48576862 - L1MEc LINE L1 -3475 2740 2498 252 0 0 0 chr12 95705627 95705655 -48576834 + (TA)n Simple_repeat Simple_repeat 2 29 0 1942 228 22 21 chr12 95705655 95706104 -48576385 - L1MEc LINE L1 -3717 2498 2089 1281 217 18 14 chr12 95706095 95706371 -48576118 - L1MEc LINE L1 -6098 298 22 * 468 270 85 19 chr12 95706507 95706718 -48575771 + L2 LINE L2 2464 2688 -626 4457 234 48 22 chr12 95706732 95708194 -48574295 - L1ME2 LINE L1 -3 6230 4807 1904 147 0 0 chr12 95708194 95708467 -48574022 - AluJb SINE Alu -19 293 21 4457 234 48 22 chr12 95708467 95708844 -48573645 - L1ME2 LINE L1 -1426 4807 4318 207 0 0 0 chr12 95708844 95708867 -48573622 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4457 234 48 22 chr12 95708867 95709100 -48573389 - L1ME2 LINE L1 -1915 4318 4092 738 254 21 8 chr12 95709123 95709363 -48573126 - L1ME2 LINE L1 -2371 3844 3602 419 289 45 29 chr12 95709444 95709686 -48572803 - L1ME2 LINE L1 -6129 267 22 820 256 117 8 chr12 95709697 95710023 -48572466 + L2 LINE L2 2713 3058 -255 568 224 164 0 chr12 95710136 95710270 -48572219 - MER58A DNA MER1_type 0 156 1 2238 103 0 3 chr12 95710341 95710642 -48571847 - AluY SINE Alu -11 300 1 896 295 83 40 chr12 95710877 95711324 -48571165 - MLT1L LTR MaLR 0 615 150 871 209 119 10 chr12 95711327 95711528 -48570961 + MER58A DNA MER1_type 2 224 0 2226 91 10 13 chr12 95712637 95712944 -48569545 + AluSq SINE Alu 1 306 -7 576 88 165 0 chr12 95714746 95714837 -48567652 + U6 snRNA snRNA 2 107 0 2489 149 48 11 chr12 95714837 95715299 -48567190 + L1MA6 LINE L1 5816 6294 -6 1057 142 51 0 chr12 95715596 95715772 -48566717 - L1PA16 LINE L1 -9 6157 5973 226 241 86 0 chr12 95715980 95716038 -48566451 - L2 LINE L2 0 3313 3251 842 134 10 67 chr12 95716061 95716167 -48566322 + L1MB3 LINE L1 5998 6090 -93 1991 109 6 53 chr12 95716167 95716487 -48566002 - AluSx SINE Alu -7 305 1 842 134 10 67 chr12 95716487 95716574 -48565915 + L1MB3 LINE L1 6090 6180 -3 200 213 0 0 chr12 95716578 95716625 -48565864 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2379 237 70 11 chr12 95716633 95717464 -48565025 - L2 LINE L2 -82 3231 2336 478 152 202 0 chr12 95717751 95717850 -48564639 - Charlie4 DNA MER1_type -1839 122 4 328 321 112 15 chr12 95718064 95718164 -48564325 - L1MC4 LINE L1 -21 8021 7932 216 111 0 0 chr12 95718164 95718200 -48564289 + (CA)n Simple_repeat Simple_repeat 2 37 0 328 321 112 15 chr12 95718200 95718295 -48564194 - L1MC4 LINE L1 -110 7932 7807 3161 176 20 11 chr12 95718295 95719248 -48563241 + L1PA16 LINE L1 4815 5771 -395 189 0 0 0 chr12 95719254 95719275 -48563214 + (TG)n Simple_repeat Simple_repeat 2 22 0 335 221 70 23 chr12 95719277 95719363 -48563126 + L1MC4 LINE L1 6614 6703 -1339 300 221 0 0 chr12 95719364 95719441 -48563048 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 2023 122 4 4 chr12 95719450 95719729 -48562760 - AluSg SINE Alu -31 279 1 244 103 0 103 chr12 95719745 95719803 -48562686 - L1MC4 LINE L1 -1339 6703 6652 1872 137 83 14 chr12 95719821 95720171 -48562318 + L1PA16 LINE L1 5784 6157 -9 843 251 181 49 chr12 95720261 95720774 -48561715 - L1MC4 LINE L1 -274 7768 7188 201 196 0 0 chr12 95721169 95721220 -48561269 + CT-rich Low_complexity Low_complexity 5 55 0 189 0 0 0 chr12 95722467 95722488 -48560001 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 24 0 0 0 chr12 95722813 95722837 -48559652 + AT_rich Low_complexity Low_complexity 1 24 0 1775 171 0 23 chr12 95724179 95724484 -48558005 + AluJb SINE Alu 1 298 -14 1685 182 62 104 chr12 95724790 95724882 -48557607 + MLT1C LTR MaLR 1 95 -372 4168 49 15 4 chr12 95724882 95725408 -48557081 + L1PA6 LINE L1 5623 6154 0 1685 182 62 104 chr12 95725408 95725423 -48557066 + MLT1C LTR MaLR 95 109 -358 1577 76 4 17 chr12 95725423 95725660 -48556829 + L1PA10 LINE L1 5931 6164 -4 1685 182 62 104 chr12 95725660 95726039 -48556450 + MLT1C LTR MaLR 109 467 0 23 33 0 0 chr12 95726244 95726274 -48556215 + AT_rich Low_complexity Low_complexity 1 30 0 1000 254 5 5 chr12 95726717 95726941 -48555548 + MER58A DNA MER1_type 1 224 0 426 272 89 30 chr12 95727464 95727633 -48554856 + MIR SINE MIR 84 262 0 2579 148 5 37 chr12 95727669 95728101 -48554388 + MSTC LTR MaLR 11 428 0 1820 207 113 25 chr12 95728179 95728657 -48553832 - MLT2B1 LTR ERVL 0 520 1 7318 123 26 32 chr12 95728657 95729828 -48552661 - ERVL-B1 LTR ERVL -7 5757 4594 * 15719 189 53 65 chr12 95729826 95732289 -48550200 - ERVL-B1 LTR ERVL -2056 3708 1209 406 133 201 0 chr12 95732289 95732384 -48550105 - FLAM_C SINE Alu -8 125 1 15719 189 53 65 chr12 95732384 95733578 -48548911 - ERVL-B1 LTR ERVL -4555 1209 2 255 130 22 0 chr12 95733579 95733625 -48548864 + MLT2B2 LTR ERVL 458 504 -11 347 40 0 20 chr12 95733631 95733681 -48548808 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 887 228 45 10 chr12 95733681 95733883 -48548606 + ERVL-B2 LTR ERVL 244 452 -5312 1094 219 48 39 chr12 95733954 95734340 -48548149 - MLT2B1 LTR ERVL -54 410 2 924 251 109 52 chr12 95734341 95734572 -48547917 - L2 LINE L2 -31 3282 3023 2434 78 0 0 chr12 95734572 95734879 -48547610 + AluY SINE Alu 1 307 -4 924 251 109 52 chr12 95734879 95734994 -48547495 - L2 LINE L2 -290 3023 2916 1080 264 132 39 chr12 95735002 95735563 -48546926 - L2 LINE L2 -2075 1239 627 184 305 102 0 chr12 95735647 95735706 -48546783 + L2 LINE L2 2995 3059 -213 308 282 188 34 chr12 95736469 95736618 -48545871 + MER5B DNA MER1_type 7 178 0 204 343 152 0 chr12 95737384 95737483 -48545006 + MIR SINE MIR 18 131 -131 301 264 162 41 chr12 95737602 95737799 -48544690 - L2 LINE L2 -2219 1095 875 1821 126 84 31 chr12 95738506 95738862 -48543627 + THE1C LTR MaLR 1 375 0 242 228 24 134 chr12 95739282 95739409 -48543080 + MIR SINE MIR 52 164 -98 264 186 85 0 chr12 95739583 95739642 -48542847 + HSMAR1 DNA Mariner 1 64 -1223 21 89 0 0 chr12 95740466 95740522 -48541967 + AT_rich Low_complexity Low_complexity 1 56 0 338 192 29 106 chr12 95741016 95741085 -48541404 - MIR SINE MIR 0 262 202 1642 181 10 26 chr12 95741085 95741389 -48541100 - AluJo SINE Alu -13 299 1 338 192 29 106 chr12 95741389 95741423 -48541066 - MIR SINE MIR -60 202 167 1112 52 0 0 chr12 95741423 95741558 -48540931 + AluY SINE Alu 164 298 -13 633 227 73 7 chr12 95741560 95741710 -48540779 - MIR SINE MIR -101 161 2 333 274 89 78 chr12 95741762 95741941 -48540548 + MIR SINE MIR 33 213 -49 492 321 71 29 chr12 95743089 95743400 -48539089 + L3b LINE CR1 1114 1437 -146 709 187 0 30 chr12 95743429 95743563 -48538926 - FLAM_A SINE Alu -1 132 3 216 377 61 18 chr12 95744022 95744136 -48538353 - MIR SINE MIR -107 155 37 901 292 64 22 chr12 95744296 95744608 -48537881 + LTR16A LTR ERVL 120 444 -6 782 349 36 25 chr12 95744821 95745262 -48537227 + HERV16 LTR ERVL 266 711 -4285 446 309 108 0 chr12 95745310 95745449 -48537040 + HERV16 LTR ERVL 1682 1835 -3161 392 269 28 9 chr12 95745451 95745559 -48536930 - MER3 DNA MER1_type -99 110 1 548 352 25 0 chr12 95745564 95745760 -48536729 + HERV16 LTR ERVL 2848 3048 -2716 843 297 35 79 chr12 95746022 95746083 -48536406 + LTR16A LTR ERVL 16 78 -372 2048 116 69 36 chr12 95746083 95746446 -48536043 + THE1C LTR MaLR 1 375 0 9370 122 51 31 chr12 95746446 95747995 -48534494 + THE1C-int LTR MaLR 1 1580 0 2090 130 56 6 chr12 95747997 95748352 -48534137 + THE1C LTR MaLR 3 375 0 843 297 35 79 chr12 95748352 95748411 -48534078 + LTR16A LTR ERVL 78 138 -312 2534 111 103 0 chr12 95748411 95748799 -48533690 - MSTC LTR MaLR 0 428 1 843 297 35 79 chr12 95748799 95749128 -48533361 + LTR16A LTR ERVL 138 450 0 246 336 69 46 chr12 95749772 95749903 -48532586 + MIR SINE MIR 20 153 -55 1967 166 0 6 chr12 95749903 95750217 -48532272 + AluJb SINE Alu 1 312 0 260 221 21 74 chr12 95751797 95751857 -48530632 + MIR SINE MIR 96 151 -111 2020 241 83 24 chr12 95751857 95752446 -48530043 + MLT1E2 LTR MaLR 1 624 -2 260 221 21 74 chr12 95752446 95752480 -48530009 + MIR SINE MIR 151 185 -77 229 244 0 0 chr12 95752605 95752650 -48529839 - MIR SINE MIR 0 262 218 2450 211 87 37 chr12 95755006 95755653 -48526836 - L1MC4 LINE L1 0 8042 7353 2048 132 7 0 chr12 95755653 95755954 -48526535 - AluSx SINE Alu 0 303 1 2450 211 87 37 chr12 95755954 95756029 -48526460 - L1MC4 LINE L1 -689 7353 7283 369 320 116 35 chr12 95756066 95756410 -48526079 + LTR33 LTR ERVL 1 372 -149 1874 146 70 114 chr12 95756484 95756575 -48525914 - MSTA LTR MaLR 0 428 335 1104 16 0 0 chr12 95756575 95756704 -48525785 - L1PA4 LINE L1 -3 6152 6024 1874 146 70 114 chr12 95756704 95757052 -48525437 - MSTA LTR MaLR -93 335 8 1036 281 105 19 chr12 95757553 95758019 -48524470 + LTR33 LTR ERVL 12 517 -4 21 0 0 0 chr12 95758698 95758719 -48523770 + AT_rich Low_complexity Low_complexity 1 21 0 251 314 109 41 chr12 95761091 95761311 -48521178 - MIR SINE MIR -27 235 1 189 0 0 0 chr12 95761337 95761358 -48521131 + (CAGC)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr12 95761577 95761602 -48520887 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr12 95761693 95761727 -48520762 + (CA)n Simple_repeat Simple_repeat 2 35 0 219 242 0 0 chr12 95761881 95761943 -48520546 + GA-rich Low_complexity Low_complexity 2 63 0 22 56 0 0 chr12 95762225 95762261 -48520228 + AT_rich Low_complexity Low_complexity 1 36 0 1873 161 0 3 chr12 95763706 95763998 -48518491 + AluJb SINE Alu 1 291 -21 1303 217 94 35 chr12 95765199 95765573 -48516916 + MSTD LTR MaLR 1 396 0 1588 198 109 6 chr12 95766671 95767030 -48515459 + MSTD LTR MaLR 1 396 0 33 0 0 0 chr12 95767228 95767261 -48515228 + AT_rich Low_complexity Low_complexity 1 33 0 42095 38 22 1 chr12 95767262 95773284 -48509205 - L1PA3 LINE L1 0 6155 3 2258 98 0 0 chr12 95773287 95773597 -48508892 - AluSx SINE Alu 0 310 1 271 231 0 0 chr12 95774133 95774185 -48508304 - MER5B DNA MER1_type 0 178 127 461 237 141 0 chr12 95774186 95774321 -48508168 - MER5A DNA MER1_type -1 188 35 272 259 153 0 chr12 95774330 95774415 -48508074 + MER5B DNA MER1_type 79 176 -2 765 237 302 34 chr12 95774688 95775098 -48507391 - LTR33A LTR ERVL -2 521 2 2509 141 16 30 chr12 95775332 95775772 -48506717 + Tigger2a DNA MER2_type 1 434 0 27 29 0 0 chr12 95775832 95775866 -48506623 + AT_rich Low_complexity Low_complexity 1 34 0 5495 149 18 1 chr12 95776044 95777079 -48505410 - Tigger1 DNA MER2_type 0 2418 1314 1986 151 0 7 chr12 95777079 95777377 -48505112 - AluSx SINE Alu -12 300 5 1400 257 114 51 chr12 95778048 95778819 -48503670 - HAL1 LINE L1 -1 2506 1687 911 313 170 9 chr12 95778919 95779373 -48503116 - HAL1 LINE L1 -1977 530 4 2135 119 0 0 chr12 95779405 95779690 -48502799 - AluSx SINE Alu -19 293 9 318 213 66 59 chr12 95780253 95780389 -48502100 - L1ME4a LINE L1 -3 6118 5982 2519 40 0 3 chr12 95780446 95780746 -48501743 + AluY SINE Alu 1 299 -12 953 231 42 108 chr12 95780757 95781052 -48501437 - L1MC5 LINE L1 -50 7911 7598 1819 101 83 11 chr12 95781052 95781328 -48501161 + AluSx SINE Alu 1 296 -16 953 231 42 108 chr12 95781328 95781835 -48500654 - L1MC5 LINE L1 -363 7598 7238 289 213 0 38 chr12 95781876 95781956 -48500533 - L1MC5 LINE L1 -781 7180 7104 1655 199 3 0 chr12 95781957 95782249 -48500240 + AluJb SINE Alu 1 293 -19 342 347 88 32 chr12 95782266 95782482 -48500007 - L1ME4a LINE L1 -294 5827 5600 21 0 0 0 chr12 95782500 95782521 -48499968 + AT_rich Low_complexity Low_complexity 1 21 0 448 242 0 24 chr12 95782980 95783104 -48499385 - L1MB8 LINE L1 -14 6164 6044 386 255 0 11 chr12 95783172 95783266 -48499223 - L1MB5 LINE L1 -73 6101 6009 2726 128 0 5 chr12 95783266 95783680 -48498809 + L1PA16 LINE L1 5752 6163 -3 287 214 12 48 chr12 95783694 95783778 -48498711 + HAL1b LINE L1 447 527 -821 1881 110 33 4 chr12 95783882 95784201 -48498288 - AluSx SINE Alu 0 329 3 337 302 0 0 chr12 95785328 95785457 -48497032 - L1MB5 LINE L1 -317 5804 5676 21 36 0 0 chr12 95785563 95785591 -48496898 + AT_rich Low_complexity Low_complexity 1 28 0 406 285 170 15 chr12 95785641 95785971 -48496518 - HAL1b LINE L1 -739 609 229 822 118 0 0 chr12 95787665 95787784 -48494705 - L1PB1 LINE L1 -245 5906 5788 1950 62 0 8 chr12 95787784 95788039 -48494450 + L1PB1 LINE L1 5898 6151 0 722 287 28 85 chr12 95788204 95788591 -48493898 - MLT1H LTR MaLR 0 549 185 504 167 114 0 chr12 95788666 95788780 -48493709 + MIR SINE MIR 78 204 -58 203 179 0 0 chr12 95789113 95789152 -48493337 + A-rich Low_complexity Low_complexity 1 39 0 360 333 140 52 chr12 95789808 95790927 -48491562 - L2 LINE L2 -469 2845 1628 208 339 68 0 chr12 95791245 95791304 -48491185 - L2 LINE L2 -43 3229 3167 200 297 18 72 chr12 95791678 95791789 -48490700 + MIR SINE MIR 4 108 -154 338 283 0 0 chr12 95791955 95792047 -48490442 + MLT1K LTR MaLR 491 582 -6 195 316 26 13 chr12 95792701 95792777 -48489712 + MIR SINE MIR 84 160 -102 544 279 86 30 chr12 95793266 95793499 -48488990 + MIR SINE MIR 3 248 -14 747 153 8 153 chr12 95793621 95793875 -48488614 + MER20 DNA MER1_type 1 217 -2 201 143 0 0 chr12 95794044 95794079 -48488410 + (CAA)n Simple_repeat Simple_repeat 1 35 0 1977 126 3 43 chr12 95795677 95796002 -48486487 + AluSx SINE Alu 1 312 0 199 296 0 0 chr12 95796158 95796212 -48486277 - L2 LINE L2 -8 3264 3211 23 33 0 0 chr12 95796434 95796464 -48486025 + AT_rich Low_complexity Low_complexity 1 30 0 207 362 140 26 chr12 95796520 95796978 -48485511 - L2 LINE L2 0 3313 2804 23 86 0 0 chr12 95798507 95798565 -48483924 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr12 95799287 95799308 -48483181 + AT_rich Low_complexity Low_complexity 1 21 0 249 229 0 0 chr12 95802267 95802315 -48480174 + MIR SINE MIR 200 247 -15 21 0 0 0 chr12 95802657 95802678 -48479811 + AT_rich Low_complexity Low_complexity 1 21 0 1117 278 65 39 chr12 95803331 95803824 -48478665 - MLT1J LTR MaLR -5 506 1 941 250 46 12 chr12 95804670 95804910 -48477579 + MIR SINE MIR 2 249 -13 568 276 121 30 chr12 95805211 95805410 -48477079 + MIR SINE MIR 46 262 0 2160 87 13 10 chr12 95805708 95806019 -48476470 - L1PA14 LINE L1 -3 6158 5847 24 0 0 0 chr12 95807823 95807847 -48474642 + AT_rich Low_complexity Low_complexity 1 24 0 491 255 131 35 chr12 95808557 95808702 -48473787 + MIR3 SINE MIR 33 191 -17 805 204 32 43 chr12 95808981 95809167 -48473322 - MER20 DNA MER1_type 0 219 36 1327 154 31 4 chr12 95809732 95809991 -48472498 + L1MA7 LINE L1 6022 6287 -4 425 254 160 86 chr12 95810449 95810693 -48471796 + MIR SINE MIR 1 262 0 281 307 64 0 chr12 95812719 95812859 -48469630 + L1ME4a LINE L1 5721 5869 -252 298 233 101 13 chr12 95812912 95813071 -48469418 + L1ME4a LINE L1 5944 6116 -5 246 271 114 29 chr12 95813456 95813596 -48468893 - MIR SINE MIR -40 222 71 2112 125 7 13 chr12 95813834 95814138 -48468351 - AluSx SINE Alu -10 302 1 220 234 0 65 chr12 95814723 95814784 -48467705 + T-rich Low_complexity Low_complexity 5 58 -46 1775 128 0 0 chr12 95814784 95815026 -48467463 - AluSx SINE Alu -36 276 35 220 234 0 65 chr12 95815026 95815071 -48467418 + T-rich Low_complexity Low_complexity 58 104 0 198 365 47 37 chr12 95815099 95815206 -48467283 - L2 LINE L2 -19 3253 3146 2479 144 39 2 chr12 95815539 95815950 -48466539 - MSTB LTR MaLR 0 426 1 226 302 63 0 chr12 95817789 95817852 -48464637 - L2 LINE L2 -8 3305 3239 2400 92 0 13 chr12 95817885 95818201 -48464288 + AluSq SINE Alu 1 312 -1 333 281 31 0 chr12 95818318 95818414 -48464075 - L2 LINE L2 -201 3071 2973 436 231 24 185 chr12 95818414 95818712 -48463777 + MIR SINE MIR 2 251 -11 348 365 139 26 chr12 95818741 95819051 -48463438 - L2 LINE L2 -344 2970 2626 252 327 33 40 chr12 95819051 95819201 -48463288 - MER5B DNA MER1_type 0 178 30 22 0 0 0 chr12 95819313 95819335 -48463154 + AT_rich Low_complexity Low_complexity 1 22 0 1171 195 102 16 chr12 95819336 95819582 -48462907 + AluJo SINE Alu 30 296 -16 407 313 148 21 chr12 95819616 95819859 -48462630 - L2 LINE L2 -838 2476 2203 202 262 33 33 chr12 95819933 95819994 -48462495 - L2 LINE L2 -2 3311 3251 246 305 134 50 chr12 95820004 95820266 -48462223 - L2 LINE L2 -1232 2082 1799 795 240 103 96 chr12 95820284 95820826 -48461663 + MLT1H LTR MaLR 1 546 -3 967 234 9 82 chr12 95821030 95821372 -48461117 + L1ME1 LINE L1 5823 6139 -27 2361 158 16 38 chr12 95821373 95821631 -48460858 - Tigger2a DNA MER2_type -2274 434 189 1354 121 35 167 chr12 95821631 95821978 -48460511 - AluY SINE Alu 0 301 1 2361 158 16 38 chr12 95821978 95822162 -48460327 - Tigger2a DNA MER2_type -2519 189 2 1626 221 88 70 chr12 95822241 95822856 -48459633 + MLT1E2 LTR MaLR 1 626 0 234 0 0 0 chr12 95823186 95823212 -48459277 + (TG)n Simple_repeat Simple_repeat 2 27 0 588 249 144 5 chr12 95823293 95823494 -48458995 + MIR SINE MIR 32 260 -2 5258 140 13 26 chr12 95825628 95826554 -48455935 + L1MC1 LINE L1 5420 6333 0 37 39 0 0 chr12 95826853 95826904 -48455585 + AT_rich Low_complexity Low_complexity 1 51 0 923 266 118 62 chr12 95827002 95827072 -48455417 - L1MC4a LINE L1 -1779 6029 5964 207 0 0 0 chr12 95827072 95827095 -48455394 + (TA)n Simple_repeat Simple_repeat 2 24 0 923 266 118 62 chr12 95827095 95827667 -48454822 - L1MC4a LINE L1 -1844 5964 5351 426 295 101 60 chr12 95827692 95827759 -48454730 - L1MC4a LINE L1 -870 5276 5213 6245 55 14 16 chr12 95827759 95828552 -48453937 - SVA Other Other 0 1386 596 426 295 101 60 chr12 95828552 95828931 -48453558 - L1MC4a LINE L1 -933 5213 4812 384 269 112 81 chr12 95829063 95829947 -48452542 - L1MC4a LINE L1 -1542 4604 3694 239 336 54 26 chr12 95830166 95830556 -48451933 - L1P LINE L1 -3599 2547 2147 21 36 0 0 chr12 95830712 95830740 -48451749 + AT_rich Low_complexity Low_complexity 1 28 0 1020 290 115 31 chr12 95830909 95831650 -48450839 - HAL1b LINE L1 -437 911 109 2122 134 0 0 chr12 95831663 95831962 -48450527 - AluSq SINE Alu -14 299 1 897 321 88 0 chr12 95832124 95832476 -48450013 - L2 LINE L2 -388 2926 2544 363 337 37 25 chr12 95832598 95832761 -48449728 - L2 LINE L2 0 3313 3149 * 680 260 48 19 chr12 95832736 95832944 -48449545 - MIR SINE MIR -1 261 48 565 355 37 4 chr12 95832994 95833236 -48449253 - L2 LINE L2 -248 3065 2816 * 667 275 28 28 chr12 95833229 95833447 -48449042 - L2 LINE L2 -642 2672 2455 282 290 90 0 chr12 95833656 95833756 -48448733 - MIR SINE MIR -101 161 53 548 300 26 39 chr12 95835446 95835679 -48446810 + MIR SINE MIR 21 250 -12 23 33 0 0 chr12 95838143 95838173 -48444316 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 95838443 95838465 -48444024 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 95838769 95838797 -48443692 + AT_rich Low_complexity Low_complexity 1 28 0 704 108 25 8 chr12 95839161 95839281 -48443208 + AluSg/x SINE Alu 183 304 -8 340 291 146 0 chr12 95840279 95840389 -48442100 + L2 LINE L2 3187 3312 -1 24 0 0 0 chr12 95841182 95841206 -48441283 + GC_rich Low_complexity Low_complexity 1 24 0 1176 204 0 22 chr12 95941631 95941861 -48340628 - AluJb SINE Alu -87 225 1 3980 145 122 29 chr12 95941945 95943314 -48339175 + pTR5 LTR ERV1 740 2606 0 918 104 0 0 chr12 95943314 95943439 -48339050 + pTR5 LTR ERV1 270 394 -2044 2015 208 48 2 chr12 95943444 95943921 -48338568 + L1 LINE L1 2253 2751 -3395 288 0 0 0 chr12 95943921 95943953 -48338536 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 463 240 13 7 chr12 95943955 95944105 -48338384 - AluSq SINE Alu -30 283 133 234 116 0 0 chr12 95944113 95944156 -48338333 + (TG)n Simple_repeat Simple_repeat 2 44 0 1063 102 25 0 chr12 95944679 95944836 -48337653 - L1P LINE L1 -2673 3473 3313 329 345 58 9 chr12 95945130 95945458 -48337031 + L1ME4a LINE L1 5548 5891 -230 618 231 25 0 chr12 95945666 95945815 -48336674 - AluJb SINE Alu 0 318 167 2320 77 3 10 chr12 95945832 95946129 -48336360 - AluY SINE Alu -16 295 1 2124 52 0 4 chr12 95946154 95946423 -48336066 - L1PA6 LINE L1 0 6154 5887 2273 117 0 0 chr12 95946555 95946853 -48335636 - AluSg SINE Alu -12 298 1 2353 80 10 3 chr12 95947880 95948182 -48334307 - AluSc SINE Alu 0 309 6 526 277 8 0 chr12 95948197 95948316 -48334173 + MER5A DNA MER1_type 69 188 -1 233 254 18 0 chr12 95948363 95948418 -48334071 - MLT1K LTR MaLR -48 540 485 1192 200 109 72 chr12 95949446 95949530 -48332959 - MER31-int LTR ERV1 -1706 3230 3151 1960 156 3 3 chr12 95949530 95949837 -48332652 + AluJb SINE Alu 3 309 -3 1192 200 109 72 chr12 95949837 95950236 -48332253 - MER31-int LTR ERV1 -1785 3151 2729 881 110 0 29 chr12 95950264 95950400 -48332089 + L1PA10 LINE L1 6035 6166 -2 1692 158 30 26 chr12 95950418 95950721 -48331768 + AluSx SINE Alu 1 304 -8 452 245 0 7 chr12 95950790 95951063 -48331426 + AluSg SINE Alu 2 272 -38 1118 29 0 7 chr12 95951072 95951211 -48331278 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 322 111 0 19 chr12 95951234 95951288 -48331201 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 8197 63 9 1 chr12 95951450 95952513 -48329976 - L1P LINE L1 -1365 4781 3710 1791 211 62 114 chr12 95952614 95953339 -48329150 + HAL1 LINE L1 1178 1864 -643 1149 207 192 73 chr12 95954174 95954851 -48327638 + SATR1 Satellite Satellite 1 757 -5 1125 207 229 24 chr12 95954879 95955255 -48327234 + SATR1 Satellite Satellite 12 464 -6 2140 196 177 3 chr12 95955362 95956887 -48325602 - SATR1 Satellite Satellite -354 1791 1 285 366 46 15 chr12 95957008 95957139 -48325350 - L2 LINE L2 -1 3271 3137 566 238 21 67 chr12 95957239 95957432 -48325057 - MER63A DNA MER1_type -18 192 9 361 323 55 0 chr12 95957475 95957602 -48324887 - L2 LINE L2 -247 3066 2933 209 108 27 0 chr12 95959158 95959195 -48323294 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 258 324 65 43 chr12 95960123 95960262 -48322227 - MIR SINE MIR -83 179 38 1352 39 0 0 chr12 95960548 95960704 -48321785 - AluY SINE Alu -155 156 1 191 311 33 0 chr12 95960870 95960931 -48321558 + L2 LINE L2 3201 3263 -9 2013 155 3 0 chr12 95961202 95961506 -48320983 - AluSp SINE Alu -8 305 1 1602 170 34 8 chr12 95961510 95961898 -48320591 - L1M2 LINE L1 -4732 2117 1720 370 143 16 0 chr12 95961934 95961997 -48320492 + AluY SINE Alu 1 64 -235 1092 201 221 25 chr12 95962134 95962732 -48319757 + SATR1 Satellite Satellite 1 715 -1 502 216 42 48 chr12 95962788 95962955 -48319534 - MER58C DNA MER1_type -5 210 45 4921 97 9 10 chr12 95963610 95964947 -48317542 - L1PA7 LINE L1 -229 5925 4595 944 254 36 5 chr12 95965413 95965637 -48316852 - MIR SINE MIR -31 231 1 2065 113 28 3 chr12 95965724 95966006 -48316483 + AluSx SINE Alu 1 289 -23 633 190 0 0 chr12 95966438 95966559 -48315930 + AluSp/q SINE Alu 192 312 -1 254 239 15 0 chr12 95967842 95967909 -48314580 - MER115 DNA AcHobo -25 668 601 1845 85 4 4 chr12 95967914 95968162 -48314327 + AluY SINE Alu 62 309 -2 1575 163 21 42 chr12 95968178 95968487 -48314002 + AluSx SINE Alu 1 303 0 23 0 0 0 chr12 95968764 95968787 -48313702 + AT_rich Low_complexity Low_complexity 1 23 0 760 194 16 0 chr12 95968787 95968916 -48313573 - AluJb SINE Alu -23 289 159 1790 179 140 17 chr12 95969059 95969607 -48312882 - SATR1 Satellite Satellite 0 615 1 2339 173 118 10 chr12 95969636 95970461 -48312028 - SATR1 Satellite Satellite -1 914 1 340 239 194 0 chr12 95970699 95970854 -48311635 + MER2 DNA MER2_type 160 344 -1 2014 122 7 0 chr12 95970972 95971251 -48311238 + AluSx SINE Alu 23 303 -9 2324 89 7 7 chr12 95971312 95971615 -48310874 + AluSp SINE Alu 1 303 -10 23 0 0 0 chr12 95972899 95972922 -48309567 + AT_rich Low_complexity Low_complexity 1 23 0 1687 239 50 9 chr12 95975486 95975930 -48306559 - LTR40b LTR ERVL 0 462 1 2712 198 31 15 chr12 95976498 95977108 -48305381 + L1ME1 LINE L1 5542 6161 -5 2711 125 9 41 chr12 95977701 95978141 -48304348 + MSTB LTR MaLR 1 426 0 2032 159 0 7 chr12 95978439 95978747 -48303742 + AluSx SINE Alu 1 306 -6 1771 175 16 3 chr12 95980675 95980978 -48301511 - 7SLRNA srpRNA srpRNA -13 307 1 205 275 99 23 chr12 95981882 95982013 -48300476 + L2 LINE L2 2610 2750 -564 206 308 0 0 chr12 95984091 95984143 -48298346 + L2 LINE L2 3221 3272 0 1653 185 16 32 chr12 95984289 95984668 -48297821 + AluJo SINE Alu 4 377 0 1861 130 19 16 chr12 95984690 95984997 -48297492 + AluSq SINE Alu 1 308 -5 330 241 141 116 chr12 95987234 95987666 -48294823 - LTR33A LTR ERVL -15 508 66 2210 173 108 11 chr12 95988798 95989433 -48293056 + SATR1 Satellite Satellite 1 696 -1 1302 202 216 42 chr12 95989944 95990722 -48291767 - SATR1 Satellite Satellite -2 912 1 423 279 118 11 chr12 95992880 95993142 -48289347 - L1M4 LINE L1 -2299 3847 3558 5860 173 43 9 chr12 95993604 95994767 -48287722 - L1 LINE L1 -1289 4857 3647 239 71 24 0 chr12 95994767 95994809 -48287680 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5860 173 43 9 chr12 95994809 95994906 -48287583 - L1 LINE L1 -2499 3647 3555 835 202 94 22 chr12 95994998 95995221 -48287268 + LTR54 LTR ERV1 1 239 -271 767 178 8 0 chr12 95995256 95995385 -48287104 + AluJo SINE Alu 5 134 -178 21 36 0 0 chr12 95995385 95995413 -48287076 + AT_rich Low_complexity Low_complexity 1 28 0 2543 47 0 28 chr12 95995502 95995821 -48286668 - AluY SINE Alu -1 310 1 5204 41 0 5 chr12 95996491 95997122 -48285367 + L1PA5 LINE L1 5520 6147 -7 508 216 46 7 chr12 95997490 95997643 -48284846 + L1MD1 LINE L1 2521 2679 -3467 3992 223 66 17 chr12 95997661 95999177 -48283312 + L1MD1 LINE L1 4639 6241 -1 4553 98 44 42 chr12 95999911 96000598 -48281891 + LTR12 LTR ERV1 1 688 0 7392 115 12 13 chr12 96000623 96002179 -48280310 + HERV9 LTR ERV1 59 1696 -6703 3377 131 0 0 chr12 96002178 96002688 -48279801 + HERV9 LTR ERV1 2463 2972 -5427 * 1286 102 0 29 chr12 96002687 96002893 -48279596 + HERV9 LTR ERV1 4756 4955 -3444 * 2127 161 112 94 chr12 96002874 96003607 -48278882 + Harlequin LTR ERV1 840 1593 -5303 944 26 0 0 chr12 96003607 96003720 -48278769 - L1PA2 LINE L1 -2 6153 6041 2127 161 112 94 chr12 96003720 96003871 -48278618 + Harlequin LTR ERV1 1593 1740 -5156 * 5467 102 5 1 chr12 96003869 96004640 -48277849 + Harlequin LTR ERV1 7626 8399 0 4929 69 23 29 chr12 96004640 96005332 -48277157 + LTR12 LTR ERV1 1 688 0 26 30 0 0 chr12 96005344 96005377 -48277112 + AT_rich Low_complexity Low_complexity 1 33 0 190 333 49 25 chr12 96005461 96005542 -48276947 - MIR SINE MIR -64 144 62 * 370 320 120 15 chr12 96005537 96005737 -48276752 - MIR SINE MIR 0 262 42 324 0 0 0 chr12 96005834 96005870 -48276619 + (CA)n Simple_repeat Simple_repeat 2 37 0 1289 195 17 106 chr12 96006037 96006443 -48276046 - MLT1A2 LTR MaLR -1 373 4 22 0 0 0 chr12 96006501 96006523 -48275966 + AT_rich Low_complexity Low_complexity 1 22 0 368 300 74 71 chr12 96006682 96006965 -48275524 + L1MEc LINE L1 22 305 -6091 932 266 62 20 chr12 96006998 96007351 -48275138 + L1MEc LINE L1 358 725 -5671 5890 149 32 3 chr12 96007371 96008722 -48273767 - Tigger1 DNA MER2_type -1 2417 987 3097 176 103 10 chr12 96008755 96009368 -48273121 - Tigger1 DNA MER2_type -1744 674 5 855 262 61 86 chr12 96009368 96009968 -48272521 + L1MEc LINE L1 739 1308 -5088 2102 104 0 7 chr12 96009968 96010248 -48272241 + AluSg SINE Alu 4 281 -29 855 262 61 86 chr12 96010248 96010596 -48271893 + L1MEc LINE L1 1308 1663 -4733 45 34 0 0 chr12 96010602 96010661 -48271828 + AT_rich Low_complexity Low_complexity 1 59 0 386 252 25 82 chr12 96010664 96010823 -48271666 + L1MEc LINE L1 3096 3245 -2970 225 256 16 91 chr12 96011267 96011388 -48271101 + L2 LINE L2 2937 3048 -224 24 0 0 0 chr12 96011835 96011859 -48270630 + AT_rich Low_complexity Low_complexity 1 24 0 7371 86 2 10 chr12 96012026 96013681 -48268808 - HERVL-A1 LTR ERVL -3907 1747 1 3275 72 0 39 chr12 96013681 96014138 -48268351 - MLT2A1 LTR ERVL 0 444 6 543 157 12 0 chr12 96014144 96014227 -48268262 + LOR1a LTR ERV1 414 497 0 21 0 0 0 chr12 96014474 96014495 -48267994 + AT_rich Low_complexity Low_complexity 1 21 0 260 208 39 0 chr12 96015442 96015519 -48266970 + (TA)n Simple_repeat Simple_repeat 1 80 0 255 281 67 22 chr12 96015547 96015636 -48266853 + L2 LINE L2 3208 3300 -13 21 36 0 0 chr12 96015656 96015684 -48266805 + AT_rich Low_complexity Low_complexity 1 28 0 236 192 0 19 chr12 96015861 96015913 -48266576 + (CA)n Simple_repeat Simple_repeat 2 52 0 181 313 114 46 chr12 96016253 96016384 -48266105 - L2 LINE L2 -2881 433 294 21 36 0 0 chr12 96016410 96016438 -48266051 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 96016986 96017007 -48265482 + AT_rich Low_complexity Low_complexity 1 21 0 336 314 84 75 chr12 96017232 96017659 -48264830 + L1M4 LINE L1 4480 4910 -1236 549 284 78 58 chr12 96018035 96018630 -48263859 + L1ME1 LINE L1 5265 5876 -290 509 30 15 0 chr12 96018788 96018855 -48263634 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1378 192 21 38 chr12 96019407 96019694 -48262795 + AluJo SINE Alu 1 282 -30 1463 213 51 19 chr12 96019736 96020111 -48262378 + MER39 LTR ERV1 301 687 -20 22 0 0 0 chr12 96021092 96021114 -48261375 + AT_rich Low_complexity Low_complexity 1 22 0 228 329 40 0 chr12 96021291 96021367 -48261122 + L2 LINE L2 3151 3229 -43 677 254 162 18 chr12 96021457 96021729 -48260760 + L1M4 LINE L1 4895 5205 -941 352 143 14 0 chr12 96021730 96021800 -48260689 + L1MB8 LINE L1 6106 6176 -2 319 228 81 27 chr12 96021805 96021954 -48260535 + L1M4 LINE L1 4404 4560 -1586 21 0 0 0 chr12 96022276 96022297 -48260192 + AT_rich Low_complexity Low_complexity 1 21 0 962 245 57 6 chr12 96023621 96023956 -48258533 + L1ME2 LINE L1 3764 4115 -2031 906 271 194 24 chr12 96023928 96024381 -48258108 + L1ME2 LINE L1 5626 6155 -9 * 212 353 29 0 chr12 96024661 96024763 -48257726 + MIR SINE MIR 84 188 -74 501 296 74 34 chr12 96025013 96025365 -48257124 + L1M4 LINE L1 3621 3986 -2160 314 245 20 20 chr12 96026809 96026907 -48255582 + LTR16C LTR ERVL 391 488 -3 186 43 0 0 chr12 96026907 96026930 -48255559 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 276 53 0 0 chr12 96027226 96027264 -48255225 + (TC)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr12 96027496 96027518 -48254971 + (TA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr12 96028669 96028690 -48253799 + AT_rich Low_complexity Low_complexity 1 21 0 6993 209 37 26 chr12 96029539 96030239 -48252250 - L1MA9 LINE L1 -38 6274 5583 2196 123 0 3 chr12 96030239 96030540 -48251949 - AluSx SINE Alu -12 300 1 6993 209 37 26 chr12 96030540 96032435 -48250054 - L1MA9 LINE L1 -729 5583 3656 291 263 13 0 chr12 96032566 96032642 -48249847 + MER94 DNA DNA 56 132 -2 391 59 20 0 chr12 96032767 96032818 -48249671 - MLT1C LTR MaLR -44 423 372 313 104 0 0 chr12 96032826 96032874 -48249615 - L1PA5 LINE L1 0 6154 6107 796 66 0 0 chr12 96032874 96032980 -48249509 + L1P2 LINE L1 5674 5779 -375 23 33 0 0 chr12 96032984 96033014 -48249475 + AT_rich Low_complexity Low_complexity 1 30 0 1120 317 9 21 chr12 96034771 96035191 -48247298 + L1MC4a LINE L1 6442 6856 -952 488 306 40 12 chr12 96035197 96035370 -48247119 + L1ME LINE L1 352 529 -5887 269 292 130 0 chr12 96035528 96035651 -48246838 + L1M3c LINE L1 1472 1965 -4610 206 200 40 0 chr12 96035654 96035704 -48246785 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 21 0 0 0 chr12 96035745 96035766 -48246723 + AT_rich Low_complexity Low_complexity 1 21 0 472 280 102 14 chr12 96035820 96036242 -48246247 + L1ME LINE L1 1334 1860 -4566 9224 78 18 34 chr12 96036476 96037827 -48244662 - SVA Other Other 0 1386 58 231 326 0 45 chr12 96037896 96038028 -48244461 + L1ME LINE L1 2149 2274 -4333 680 235 71 18 chr12 96038030 96038200 -48244289 - MER5A DNA MER1_type -1 188 10 2182 238 78 46 chr12 96038352 96039302 -48243187 + L1ME LINE L1 2398 3377 -3049 21 57 0 0 chr12 96039742 96039777 -48242712 + AT_rich Low_complexity Low_complexity 1 35 0 272 269 34 87 chr12 96041563 96041712 -48240777 - MIR SINE MIR -64 198 58 294 141 127 0 chr12 96042048 96042119 -48240370 - L1MC5 LINE L1 -921 7040 6961 462 317 102 64 chr12 96042358 96042478 -48240011 - L1MC4a LINE L1 -1217 6591 6477 1666 174 61 30 chr12 96042478 96042840 -48239649 + THE1C LTR MaLR 1 373 -2 462 317 102 64 chr12 96042840 96043237 -48239252 - L1MC4a LINE L1 -1331 6477 6054 24 32 0 0 chr12 96043269 96043300 -48239189 + AT_rich Low_complexity Low_complexity 1 31 0 872 312 50 57 chr12 96043336 96043981 -48238508 - L1MC4a LINE L1 -1876 5932 5293 8802 229 76 20 chr12 96044017 96045047 -48237442 - L1MB2 LINE L1 -19 7112 6142 2229 100 7 3 chr12 96045047 96045357 -48237132 - AluSx SINE Alu -1 311 1 8802 229 76 20 chr12 96045357 96048285 -48234204 - L1MB2 LINE L1 -989 6142 2917 2026 245 34 28 chr12 96048295 96048768 -48233721 + MER70B LTR ERVL 1 476 -102 1730 237 13 18 chr12 96048799 96049500 -48232989 + MER70B-int LTR ERVL 2 743 -4280 * 4856 188 22 21 chr12 96049491 96050406 -48232083 + MER70B-int LTR ERVL 4102 5017 -6 2488 230 2 8 chr12 96050418 96050897 -48231592 + MER70B LTR ERVL 1 476 -102 22 0 0 0 chr12 96050941 96050963 -48231526 + AT_rich Low_complexity Low_complexity 1 22 0 268 245 49 28 chr12 96050972 96051115 -48231374 - L1MB2 LINE L1 -4260 2848 2703 297 67 22 0 chr12 96051168 96051213 -48231276 + MADE1 DNA Mariner 1 46 -34 1536 236 44 11 chr12 96051229 96051665 -48230824 - L1MB2 LINE L1 -4568 2540 2091 795 269 58 34 chr12 96051704 96052121 -48230368 - L1MB2 LINE L1 -4800 2237 1811 2123 130 44 0 chr12 96052235 96052573 -48229916 - THE1A LTR MaLR -2 353 1 254 341 40 23 chr12 96052713 96052886 -48229603 - L1MB2 LINE L1 -6854 176 1 1904 121 35 7 chr12 96053262 96053551 -48228938 - AluSx SINE Alu -15 297 1 32 0 0 0 chr12 96053746 96053778 -48228711 + AT_rich Low_complexity Low_complexity 1 32 0 446 383 84 0 chr12 96054186 96054413 -48228076 - MIR SINE MIR -12 250 5 989 351 90 53 chr12 96054420 96054641 -48227848 - L2 LINE L2 -4 3309 3098 2138 73 39 0 chr12 96054641 96054805 -48227684 - AluY SINE Alu -14 297 116 459 0 0 0 chr12 96054805 96054856 -48227633 + (TG)n Simple_repeat Simple_repeat 2 52 0 2138 73 39 0 chr12 96054856 96054977 -48227512 - AluY SINE Alu -195 116 1 989 351 90 53 chr12 96054977 96055776 -48226713 - L2 LINE L2 -215 3098 2199 1219 217 60 74 chr12 96055776 96055880 -48226609 + MLT1D LTR MaLR 1 105 -400 1699 185 21 0 chr12 96055880 96056167 -48226322 - AluSx SINE Alu -19 293 1 1219 217 60 74 chr12 96056167 96056574 -48225915 + MLT1D LTR MaLR 105 505 0 989 351 90 53 chr12 96056574 96057013 -48225476 - L2 LINE L2 -1114 2199 1778 243 232 18 0 chr12 96057055 96057111 -48225378 - MLT1L LTR MaLR -363 252 196 231 313 83 14 chr12 96057179 96057323 -48225166 - L2 LINE L2 -2559 755 602 211 337 12 12 chr12 96057428 96057511 -48224978 + L3 LINE CR1 1494 1576 -1 214 282 0 28 chr12 96057742 96057813 -48224676 + CT-rich Low_complexity Low_complexity 1 69 0 10460 196 74 24 chr12 96057938 96060724 -48221765 - L1MA5 LINE L1 0 7362 4715 1824 189 126 5 chr12 96060724 96061106 -48221383 - MSTA LTR MaLR 0 428 1 10460 196 74 24 chr12 96061106 96061513 -48220976 - L1MA5 LINE L1 -2647 4715 4330 2750 17 0 0 chr12 96061513 96061815 -48220674 - AluYb8 SINE Alu -14 304 3 10460 196 74 24 chr12 96061815 96062335 -48220154 - L1MA5 LINE L1 -3032 4330 3837 1553 176 66 0 chr12 96062335 96062608 -48219881 - AluJb SINE Alu -3 309 19 10460 196 74 24 chr12 96062608 96063459 -48219030 - L1MA5 LINE L1 -3525 3837 2536 3224 112 14 16 chr12 96063465 96063974 -48218515 - MER75 DNA T2_type -6 508 1 3041 246 65 93 chr12 96063974 96065493 -48216996 - L1MA5 LINE L1 -4670 2539 1064 363 306 33 0 chr12 96065516 96065637 -48216852 - L1MA5 LINE L1 -6575 634 510 229 298 36 0 chr12 96065643 96065727 -48216762 + MIR SINE MIR 103 189 -73 211 302 116 16 chr12 96066721 96066850 -48215639 + MIR SINE MIR 93 234 -28 328 282 56 90 chr12 96067173 96067398 -48215091 - MIR SINE MIR -31 231 17 3661 154 33 45 chr12 96067477 96068211 -48214278 + LTR8A LTR ERV1 3 727 0 322 111 0 0 chr12 96069080 96069125 -48213364 - MER50 LTR ERV1 -1 733 689 207 0 0 0 chr12 96069243 96069266 -48213223 + (TA)n Simple_repeat Simple_repeat 2 24 0 871 230 91 0 chr12 96070546 96070733 -48211756 + MER39 LTR ERV1 1 204 -503 * 1092 129 11 6 chr12 96070719 96070897 -48211592 + MER39 LTR ERV1 491 669 -38 1057 68 0 0 chr12 96071483 96071615 -48210874 - AluY SINE Alu -179 132 1 4645 105 4 13 chr12 96071711 96072399 -48210090 + L1PA13 LINE L1 5477 6158 -5 2433 62 3 13 chr12 96072402 96072710 -48209779 + AluY SINE Alu 1 305 -6 21 36 0 0 chr12 96072811 96072839 -48209650 + AT_rich Low_complexity Low_complexity 1 28 0 786 171 8 0 chr12 96072839 96072968 -48209521 - AluJo SINE Alu -178 134 5 856 215 94 22 chr12 96073003 96073226 -48209263 - LTR54 LTR ERV1 -271 239 1 8659 170 12 19 chr12 96073318 96075911 -48206578 + L1MA3 LINE L1 3555 6136 -169 1797 87 4 0 chr12 96075933 96076185 -48206304 + L1PA6 LINE L1 5902 6154 0 851 124 0 14 chr12 96076398 96076543 -48205946 + L1MA3 LINE L1 6132 6274 -31 322 263 18 44 chr12 96076555 96076669 -48205820 - L1MC4 LINE L1 -1339 6703 6593 1594 171 100 0 chr12 96076859 96077180 -48205309 + MER46B DNA MER2_type 9 236 0 292 222 0 0 chr12 96077209 96077263 -48205226 + MIR SINE MIR 111 164 -98 1032 249 26 0 chr12 96077599 96077864 -48204625 - L1MB7 LINE L1 -34 6150 5879 3432 126 22 70 chr12 96078547 96079215 -48203274 - L1PB4 LINE L1 -7 6149 5514 306 0 0 0 chr12 96080503 96080537 -48201952 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr12 96080668 96080688 -48201801 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 208 0 62 0 chr12 96080803 96080835 -48201654 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 363 318 175 0 chr12 96081025 96081214 -48201275 + MIR SINE MIR 3 224 -38 240 59 0 0 chr12 96081269 96081303 -48201186 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2421 39 0 0 chr12 96081303 96081584 -48200905 - AluYa5 SINE Alu -30 281 1 5183 41 0 5 chr12 96082254 96082885 -48199604 + L1PA5 LINE L1 5520 6147 -7 296 274 116 30 chr12 96083031 96083334 -48199155 - L1MEc LINE L1 -5284 1112 784 3121 173 103 10 chr12 96083378 96083991 -48198498 + Tigger1 DNA MER2_type 5 674 -1744 5809 149 32 4 chr12 96084024 96085376 -48197113 + Tigger1 DNA MER2_type 987 2417 -1 778 279 60 23 chr12 96085403 96085751 -48196738 - L1MEc LINE L1 -5678 718 358 358 285 50 88 chr12 96085807 96086067 -48196422 - L1MEc LINE L1 -6125 271 22 22 0 0 0 chr12 96086226 96086248 -48196241 + AT_rich Low_complexity Low_complexity 1 22 0 1385 196 12 105 chr12 96086306 96086714 -48195775 + MLT1A2 LTR MaLR 4 373 -1 288 0 0 0 chr12 96086881 96086913 -48195576 + (TG)n Simple_repeat Simple_repeat 2 33 0 356 320 120 15 chr12 96087010 96087210 -48195279 + MIR SINE MIR 42 262 0 186 333 49 25 chr12 96087205 96087286 -48195203 + MIR SINE MIR 62 144 -64 * 26 30 0 0 chr12 96087370 96087403 -48195086 + AT_rich Low_complexity Low_complexity 1 33 0 5004 69 23 29 chr12 96087415 96088107 -48194382 - LTR12 LTR ERV1 0 688 1 5492 100 7 1 chr12 96088107 96088877 -48193612 - HERV9 LTR ERV1 0 8399 7626 2313 170 108 87 chr12 96088875 96089026 -48193463 - HERV9 LTR ERV1 -5156 1740 1594 * 944 26 0 0 chr12 96089026 96089139 -48193350 + L1PA2 LINE L1 6041 6153 -2 2313 170 108 87 chr12 96089139 96089870 -48192619 - HERV9 LTR ERV1 -5302 1594 840 1327 118 23 27 chr12 96089837 96090057 -48192432 - HERV9 LTR ERV1 -3425 4974 4756 * 3580 129 0 0 chr12 96090056 96090566 -48191923 - HERV9 LTR ERV1 -5427 2972 2463 * 7756 118 12 14 chr12 96090547 96092121 -48190368 - HERV9 LTR ERV1 -6687 1712 59 4511 99 44 42 chr12 96092146 96092833 -48189656 - LTR12 LTR ERV1 0 688 1 4173 220 69 18 chr12 96093567 96095081 -48187408 - L1MD1 LINE L1 -1 6241 4639 550 216 46 7 chr12 96095099 96095252 -48187237 - L1MD1 LINE L1 -3467 2679 2521 5248 36 0 5 chr12 96095620 96096251 -48186238 - L1PA5 LINE L1 -7 6147 5520 28 48 0 0 chr12 96097332 96097374 -48185115 + AT_rich Low_complexity Low_complexity 1 42 0 36 23 0 0 chr12 96097437 96097480 -48185009 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr12 96097645 96097669 -48184820 + AT_rich Low_complexity Low_complexity 1 24 0 1506 209 9 19 chr12 96097861 96098176 -48184313 - AluJo SINE Alu 0 312 1 316 275 54 98 chr12 96098261 96098556 -48183933 + L1ME4a LINE L1 5753 6034 -87 4084 203 40 27 chr12 96098628 96099621 -48182868 - L1MA10 LINE L1 -1 6333 5328 27 0 0 0 chr12 96099796 96099823 -48182666 + AT_rich Low_complexity Low_complexity 1 27 0 183 129 0 0 chr12 96100160 96100191 -48182298 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr12 96100668 96100698 -48181791 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 226 317 12 0 chr12 96100828 96100910 -48181579 + Charlie8 DNA MER1_type 144 226 -2191 264 338 84 0 chr12 96101525 96101667 -48180822 - HsTC2 DNA Tc2 -1156 742 589 305 225 0 0 chr12 96101763 96101834 -48180655 - HsTC2 DNA Tc2 -1610 288 218 1734 177 4 0 chr12 96102003 96102294 -48180195 - AluSq SINE Alu 0 302 11 265 299 61 41 chr12 96102419 96102566 -48179923 + MIR SINE MIR 5 154 -108 42 36 0 0 chr12 96102581 96102637 -48179852 + AT_rich Low_complexity Low_complexity 1 56 0 21 89 0 0 chr12 96102659 96102715 -48179774 + AT_rich Low_complexity Low_complexity 1 56 0 2302 133 19 19 chr12 96102927 96103302 -48179187 + THE1C LTR MaLR 1 375 0 4201 113 119 7 chr12 96103302 96104007 -48178482 + THE1C-int LTR MaLR 1 784 -796 2425 94 9 11 chr12 96103988 96104338 -48178151 + THE1C-int LTR MaLR 1232 1580 0 * 1554 172 58 18 chr12 96104340 96104671 -48177818 + THE1C LTR MaLR 3 355 0 1662 219 19 6 chr12 96104828 96105153 -48177336 - MSTB LTR MaLR -2 424 96 8366 204 22 6 chr12 96105156 96106768 -48175721 - MSTB-int LTR MaLR -13 1638 1 2172 180 32 10 chr12 96106789 96107194 -48175295 - MSTB LTR MaLR -12 414 1 24 67 0 0 chr12 96107422 96107467 -48175022 + AT_rich Low_complexity Low_complexity 1 45 0 775 295 68 0 chr12 96107775 96108012 -48174477 + MIR SINE MIR 10 262 0 208 358 72 24 chr12 96108109 96108441 -48174048 + L2 LINE L2 2444 2791 -523 6085 182 29 11 chr12 96108443 96111330 -48171159 - L1MA8 LINE L1 -5 7705 4673 1063 213 53 18 chr12 96111331 96111556 -48170933 - MSTD LTR MaLR -48 348 116 191 211 39 0 chr12 96111561 96111613 -48170876 + L2 LINE L2 2910 2963 -309 796 28 19 9 chr12 96111652 96111759 -48170730 + (TTTC)n Simple_repeat Simple_repeat 1 108 0 680 147 16 32 chr12 96111805 96111939 -48170550 - MSTD LTR MaLR -293 103 2 3575 256 43 42 chr12 96111941 96114261 -48168228 - L1MA8 LINE L1 -2900 4665 2635 2151 118 0 0 chr12 96114261 96114549 -48167940 + AluSx SINE Alu 1 288 -24 3575 256 43 42 chr12 96114549 96115049 -48167440 - L1MA8 LINE L1 -4930 2635 2137 236 259 0 17 chr12 96116009 96116067 -48166422 - L1MA8 LINE L1 -6084 1412 1356 228 312 88 24 chr12 96116091 96116261 -48166228 + L2 LINE L2 2793 2973 -341 346 380 97 15 chr12 96116350 96116679 -48165810 - L2 LINE L2 -2256 1058 703 496 149 0 0 chr12 96116680 96116754 -48165735 + MLT2D LTR ERVL 3 76 -338 182 326 146 0 chr12 96117147 96117236 -48165253 + MIR SINE MIR 40 141 -67 21 36 0 0 chr12 96118038 96118066 -48164423 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 96119888 96119917 -48162572 + AT_rich Low_complexity Low_complexity 1 29 0 692 150 30 8 chr12 96120221 96120354 -48162135 - L1MB1 LINE L1 -5 6163 6028 6399 57 0 0 chr12 96120358 96121155 -48161334 - L1PA5 LINE L1 -15 6139 5343 1262 149 64 20 chr12 96121154 96121403 -48161086 - L1MB1 LINE L1 -124 6044 5785 * 478 79 91 12 chr12 96121427 96121592 -48160897 + (TA)n Simple_repeat Simple_repeat 1 178 0 2220 162 4 63 chr12 96121592 96122067 -48160422 - L1MB1 LINE L1 -375 5793 5347 2294 72 0 0 chr12 96122298 96122577 -48159912 + AluSc SINE Alu 19 297 -12 221 307 79 0 chr12 96123568 96123669 -48158820 + MIR SINE MIR 98 206 -56 1726 163 16 3 chr12 96123859 96124172 -48158317 - L1M2 LINE L1 -707 5584 5268 317 282 18 0 chr12 96124260 96124370 -48158119 - L1MC4a LINE L1 -1955 5853 5742 31 44 0 0 chr12 96124523 96124568 -48157921 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr12 96124720 96124741 -48157748 + AT_rich Low_complexity Low_complexity 1 21 0 1970 128 0 0 chr12 96124745 96125057 -48157432 + AluSx SINE Alu 1 312 0 714 185 21 27 chr12 96127333 96127486 -48155003 - MER20 DNA MER1_type -52 167 1 387 252 28 19 chr12 96127699 96127806 -48154683 - MIR SINE MIR -4 258 151 2213 74 0 11 chr12 96128878 96129163 -48153326 + AluY SINE Alu 1 282 -29 1933 150 3 3 chr12 96129273 96129600 -48152889 - L1P LINE L1 -2519 3627 3301 189 0 0 0 chr12 96129643 96129664 -48152825 + (T)n Simple_repeat Simple_repeat 1 21 0 991 317 38 30 chr12 96131402 96131897 -48150592 - MLT1J LTR MaLR -8 503 5 194 265 108 36 chr12 96132877 96132960 -48149529 + MER5A DNA MER1_type 36 124 -65 956 293 16 0 chr12 96133787 96134036 -48148453 + MIR SINE MIR 2 254 -8 1327 107 122 0 chr12 96135251 96135456 -48147033 - MER30 DNA MER1_type 0 230 1 30 27 0 0 chr12 96136233 96136270 -48146219 + AT_rich Low_complexity Low_complexity 1 37 0 1150 308 72 67 chr12 96138102 96138754 -48143735 + L2 LINE L2 2480 3147 -166 461 262 78 35 chr12 96138794 96139050 -48143439 - LTR37B LTR ERV1 -5 463 197 261 207 17 0 chr12 96139144 96139202 -48143287 - LTR37B LTR ERV1 -403 65 7 781 313 59 13 chr12 96139282 96139586 -48142903 - LTR16C LTR ERVL 0 491 174 194 0 39 0 chr12 96139661 96139687 -48142802 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 304 267 117 53 chr12 96139909 96140042 -48142447 + MIR SINE MIR 10 150 -63 21 36 0 0 chr12 96140982 96141010 -48141479 + AT_rich Low_complexity Low_complexity 1 28 0 26 74 0 0 chr12 96141197 96141251 -48141238 + AT_rich Low_complexity Low_complexity 1 54 0 295 315 27 18 chr12 96141320 96141431 -48141058 + L2 LINE L2 3201 3312 -1 733 315 69 50 chr12 96141681 96141978 -48140511 - L2 LINE L2 -807 2507 2196 1466 210 52 11 chr12 96141978 96142326 -48140163 - MLT1A1 LTR MaLR -3 362 1 733 315 69 50 chr12 96142326 96142507 -48139982 - L2 LINE L2 -1118 2196 2020 497 335 40 6 chr12 96142511 96142687 -48139802 + L2 LINE L2 1848 2029 -1285 186 98 59 0 chr12 96143123 96143174 -48139315 + (TTATA)n Simple_repeat Simple_repeat 5 58 0 436 286 141 4 chr12 96143657 96143889 -48138600 + L1ME LINE L1 5355 5639 -525 312 310 172 0 chr12 96143906 96144051 -48138438 - MER5A DNA MER1_type 0 189 20 490 103 23 0 chr12 96144296 96144383 -48138106 + (TG)n Simple_repeat Simple_repeat 2 90 0 304 261 0 33 chr12 96144453 96144545 -48137944 - L1MC4 LINE L1 -1340 6702 6614 3751 75 2 0 chr12 96145077 96145571 -48136918 - L1PA7 LINE L1 -8 6146 5652 272 337 0 0 chr12 96145700 96145783 -48136706 + MIR SINE MIR 65 147 -115 316 283 11 11 chr12 96147354 96147446 -48135043 - MER5A DNA MER1_type -6 183 92 1772 154 43 57 chr12 96147446 96147815 -48134674 + THE1B LTR MaLR 1 364 0 9730 86 15 147 chr12 96147815 96149636 -48132853 + THE1B-int LTR MaLR 1 1580 0 1074 145 77 43 chr12 96149636 96149843 -48132646 + THE1B LTR MaLR 1 214 -150 * 1308 159 8 35 chr12 96149842 96150099 -48132390 + THE1B LTR MaLR 115 364 0 436 308 111 0 chr12 96150156 96150328 -48132161 + MIR SINE MIR 40 230 -32 25 75 0 0 chr12 96150822 96150875 -48131614 + AT_rich Low_complexity Low_complexity 1 53 0 188 196 0 20 chr12 96151012 96151063 -48131426 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 284 254 57 41 chr12 96151121 96151243 -48131246 - L1ME LINE L1 -598 5568 5445 351 327 18 0 chr12 96151661 96151774 -48130715 + L2 LINE L2 2944 3058 -255 23 0 0 0 chr12 96151831 96151854 -48130635 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr12 96152400 96152427 -48130062 + (TG)n Simple_repeat Simple_repeat 2 28 0 1556 167 31 17 chr12 96152652 96152939 -48129550 + AluJo SINE Alu 1 291 -21 44 0 0 0 chr12 96152958 96153002 -48129487 + AT_rich Low_complexity Low_complexity 1 44 0 2208 147 21 0 chr12 96154136 96154707 -48127782 - L1P4 LINE L1 -567 5599 5021 1820 167 9 3 chr12 96154707 96155030 -48127459 + L1PA16 LINE L1 5836 6166 0 1515 226 62 54 chr12 96155054 96155555 -48126934 + MLT1D LTR MaLR 1 505 0 2162 115 0 0 chr12 96155590 96155878 -48126611 - AluSx SINE Alu -20 292 5 607 223 108 25 chr12 96158441 96158598 -48123891 + MIR SINE MIR 2 171 -91 2285 82 0 3 chr12 96158791 96159084 -48123405 - AluY SINE Alu -19 292 1 523 258 154 39 chr12 96159159 96159419 -48123070 - LTR50 LTR ERVL -505 290 1 881 220 11 21 chr12 96160296 96160487 -48122002 + MER58A DNA MER1_type 1 189 -35 2439 69 0 10 chr12 96160660 96160966 -48121523 - AluY SINE Alu -6 305 3 2389 119 11 21 chr12 96161154 96161533 -48120956 - THE1C LTR MaLR 0 375 1 255 207 17 0 chr12 96161986 96162044 -48120445 - MLT2B2 LTR ERVL 0 520 462 222 37 0 0 chr12 96162055 96162082 -48120407 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2563 199 26 4 chr12 96162083 96162545 -48119944 - MLT2B2 LTR ERVL -40 475 4 264 122 0 0 chr12 96163332 96163373 -48119116 + (TA)n Simple_repeat Simple_repeat 1 41 0 226 365 0 0 chr12 96164196 96164270 -48118219 + MIR SINE MIR 78 151 -57 267 245 126 28 chr12 96165155 96165298 -48117191 + MER104 DNA Tc2 11 167 -13 27 0 0 0 chr12 96165695 96165722 -48116767 + AT_rich Low_complexity Low_complexity 1 27 0 215 200 36 18 chr12 96166056 96166111 -48116378 - MIR SINE MIR -112 150 95 184 344 0 0 chr12 96166128 96166189 -48116300 - L2 LINE L2 -2 3311 3251 * 199 267 0 0 chr12 96166145 96166190 -48116299 - MIR SINE MIR -13 249 205 2038 126 7 0 chr12 96166699 96166992 -48115497 + AluSx SINE Alu 1 295 -17 12028 100 13 9 chr12 96166996 96168793 -48113696 - L1P LINE L1 -1041 5105 3301 189 0 0 0 chr12 96168835 96168856 -48113633 + (T)n Simple_repeat Simple_repeat 1 21 0 732 121 0 9 chr12 96169234 96169350 -48113139 + L1MA3 LINE L1 6160 6274 -31 233 261 0 34 chr12 96169362 96169450 -48113039 - L1MC4 LINE L1 -1339 6703 6619 29 28 0 0 chr12 96169452 96169488 -48113001 + AT_rich Low_complexity Low_complexity 1 36 0 1612 178 100 0 chr12 96169667 96169988 -48112501 + MER46B DNA MER2_type 9 236 0 293 222 0 0 chr12 96170017 96170071 -48112418 + MIR SINE MIR 111 164 -98 1044 249 26 0 chr12 96170408 96170673 -48111816 - L1MB7 LINE L1 -34 6150 5879 3533 124 19 67 chr12 96171356 96172024 -48110465 - L1PB4 LINE L1 -7 6149 5514 306 0 0 0 chr12 96173312 96173346 -48109143 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr12 96173477 96173497 -48108992 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 208 0 62 0 chr12 96173612 96173644 -48108845 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 366 318 175 0 chr12 96173834 96174023 -48108466 + MIR SINE MIR 3 224 -38 240 59 0 0 chr12 96174078 96174112 -48108377 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2298 60 0 0 chr12 96174112 96174393 -48108096 - AluY SINE Alu -30 281 1 302 299 20 75 chr12 96174872 96175019 -48107470 + MER5A DNA MER1_type 3 141 -48 767 279 57 22 chr12 96175030 96175495 -48106994 + L1MC/D LINE L1 5203 5687 -743 1741 161 3 26 chr12 96175539 96175844 -48106645 + AluSq SINE Alu 1 298 -15 189 0 0 0 chr12 96175845 96175866 -48106623 + (TAGA)n Simple_repeat Simple_repeat 2 22 0 1147 56 0 14 chr12 96176246 96176390 -48106099 + AluY SINE Alu 1 142 -169 24 0 0 0 chr12 96177053 96177077 -48105412 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr12 96178133 96178158 -48104331 + (TG)n Simple_repeat Simple_repeat 2 26 0 845 283 103 35 chr12 96179534 96179902 -48102587 - MLT1J LTR MaLR -74 437 45 218 291 13 25 chr12 96180020 96180099 -48102390 - MIR SINE MIR -65 143 66 1348 152 5 22 chr12 96180329 96180553 -48101936 - AluJo SINE Alu -4 308 89 310 292 71 9 chr12 96180766 96180879 -48101610 + L2 LINE L2 3149 3268 -4 29 28 0 0 chr12 96181386 96181422 -48101067 + AT_rich Low_complexity Low_complexity 1 36 0 212 319 60 35 chr12 96181490 96181606 -48100883 + MIR SINE MIR 25 143 -65 1657 283 71 14 chr12 96181610 96182105 -48100384 - MLT1E LTR MaLR 0 593 71 681 292 18 6 chr12 96182667 96182838 -48099651 + MER5B DNA MER1_type 1 173 -5 275 237 82 52 chr12 96182858 96182955 -48099534 + MER5A DNA MER1_type 10 109 -80 369 241 62 27 chr12 96183195 96183307 -48099182 + MER117 DNA MER1_type 25 140 -57 3520 132 54 24 chr12 96183401 96183785 -48098704 - MER39B LTR ERV1 0 653 241 2292 152 87 0 chr12 96183785 96184200 -48098289 + LTR47A LTR ERVL 2 452 0 3520 132 54 24 chr12 96184200 96184445 -48098044 - MER39B LTR ERV1 -412 241 5 417 257 78 11 chr12 96184454 96184633 -48097856 - LTR48 LTR ERV1 -61 726 536 * 1166 154 5 198 chr12 96184610 96185039 -48097450 - LTR49 LTR ERV1 -245 350 5 378 0 0 0 chr12 96186069 96186111 -48096378 + (CA)n Simple_repeat Simple_repeat 1 42 0 192 182 0 0 chr12 96188038 96188082 -48094407 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 2157 128 40 6 chr12 96188171 96188523 -48093966 - THE1B LTR MaLR 0 364 1 860 224 28 6 chr12 96189626 96189805 -48092684 - MLT1D LTR MaLR 0 505 323 216 178 0 22 chr12 96190047 96190092 -48092397 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr12 96190199 96190220 -48092269 + AT_rich Low_complexity Low_complexity 1 21 0 252 108 0 0 chr12 96190310 96190347 -48092142 + LTR29 LTR ERV1 1 37 -585 315 317 77 14 chr12 96192312 96192520 -48089969 + LTR16C LTR ERVL 271 491 0 275 314 84 51 chr12 96192526 96192940 -48089549 - HAL1 LINE L1 -850 1657 1230 360 260 0 0 chr12 96193221 96193298 -48089191 - Tigger5 DNA MER2_type 0 2323 2247 299 243 86 0 chr12 96193340 96193410 -48089079 - Tigger5 DNA MER2_type -2245 78 3 999 109 40 30 chr12 96193440 96193642 -48088847 - L1MA7 LINE L1 -1 6290 6087 254 171 0 0 chr12 96194081 96194122 -48088367 + LTR48 LTR ERV1 2 42 -602 992 241 70 14 chr12 96194156 96194593 -48087896 + LTR48 LTR ERV1 129 628 -16 1843 156 0 0 chr12 96195278 96195596 -48086893 - AluSx SINE Alu 0 318 1 214 272 65 54 chr12 96195696 96195788 -48086701 - L2 LINE L2 -14 3299 3207 228 94 0 0 chr12 96196175 96196207 -48086282 + LTR29 LTR ERV1 1 32 -590 * 509 165 10 31 chr12 96196203 96196300 -48086189 + LTR49 LTR ERV1 494 588 -7 716 197 16 0 chr12 96196309 96196436 -48086053 + LTR49-int LTR ERV1 1 129 -6202 306 87 0 0 chr12 96196436 96196482 -48086007 + (TC)n Simple_repeat Simple_repeat 2 47 0 3221 193 46 61 chr12 96196484 96197712 -48084777 + LTR49-int LTR ERV1 114 1481 -4465 230 169 237 0 chr12 96197712 96197771 -48084718 + tRNA-Glu-GAG tRNA tRNA 3 75 0 499 121 22 11 chr12 96197814 96197905 -48084584 + LTR48B-int LTR ERV1 1291 1382 -4949 5696 179 60 89 chr12 96198008 96198319 -48084170 + LTR48B-int LTR ERV1 1355 1673 -4658 351 0 0 0 chr12 96198319 96198358 -48084131 + (TG)n Simple_repeat Simple_repeat 2 40 0 5696 179 60 89 chr12 96198358 96199172 -48083317 + LTR48B-int LTR ERV1 1673 2427 -3904 2168 116 0 0 chr12 96199172 96199464 -48083025 + AluSg SINE Alu 1 292 -18 5696 179 60 89 chr12 96199464 96199877 -48082612 + LTR48B-int LTR ERV1 2427 2850 -3481 1017 204 9 45 chr12 96199899 96199991 -48082498 + LTR48B-int LTR ERV1 5952 6046 -285 915 48 87 0 chr12 96199991 96200117 -48082372 - MER85 DNA T2_type -2 137 1 1017 204 9 45 chr12 96200117 96200245 -48082244 + LTR48B-int LTR ERV1 6046 6164 -167 1867 241 80 12 chr12 96200350 96200953 -48081536 + LTR48B LTR ERV1 1 644 0 1735 165 0 0 chr12 96201595 96201861 -48080628 - AluSx SINE Alu -46 266 1 22 0 0 0 chr12 96201863 96201885 -48080604 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 96202435 96202456 -48080033 + AT_rich Low_complexity Low_complexity 1 21 0 515 232 68 72 chr12 96203103 96203340 -48079149 + MER106A DNA MER1_type 1 236 0 194 227 0 15 chr12 96204304 96204370 -48078119 + GA-rich Low_complexity Low_complexity 2 66 0 1275 204 114 42 chr12 96204620 96205168 -48077321 - LTR48 LTR ERV1 0 729 203 29 60 0 0 chr12 96206643 96206693 -48075796 + AT_rich Low_complexity Low_complexity 1 50 0 374 189 0 0 chr12 96206771 96206845 -48075644 - MER116 DNA Mariner 0 80 7 183 253 205 0 chr12 96208670 96208753 -48073736 + MER5A DNA MER1_type 90 189 0 267 103 0 0 chr12 96208803 96208842 -48073647 + (TG)n Simple_repeat Simple_repeat 2 40 0 30 0 0 0 chr12 96209164 96209194 -48073295 + AT_rich Low_complexity Low_complexity 1 30 0 297 304 39 69 chr12 96210036 96210240 -48072249 + L2 LINE L2 3112 3309 -4 183 42 0 0 chr12 96211768 96211792 -48070697 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2034 97 4 4 chr12 96211795 96212073 -48070416 - AluSq SINE Alu -35 278 1 238 331 47 41 chr12 96212702 96212871 -48069618 + MLT1J LTR MaLR 4 173 -338 291 225 0 42 chr12 96213073 96213144 -48069345 + MLT1J LTR MaLR 395 462 -49 364 279 25 56 chr12 96213600 96213761 -48068728 - L2 LINE L2 -192 3080 2925 606 310 84 42 chr12 96213975 96214401 -48068088 - L2 LINE L2 -657 2657 2214 272 328 106 20 chr12 96214668 96214866 -48067623 - MIR SINE MIR -7 255 41 714 256 98 86 chr12 96214929 96215486 -48067003 - MER34B LTR ERV1 0 542 3 25 65 0 0 chr12 96216225 96216271 -48066218 + AT_rich Low_complexity Low_complexity 1 46 0 354 213 43 21 chr12 96216689 96216783 -48065706 - MLT2F LTR ERVL -531 132 37 393 222 128 0 chr12 96217030 96217147 -48065342 + L2 LINE L2 2136 2267 -1047 977 309 112 28 chr12 96217147 96217859 -48064630 + L2 LINE L2 2521 3313 0 1414 188 92 123 chr12 96219389 96219957 -48062532 + LTR49 LTR ERV1 1 550 -45 881 259 39 112 chr12 96219986 96220448 -48062041 + MLT1F1 LTR MaLR 9 436 -131 817 279 77 4 chr12 96220448 96220681 -48061808 - MLT1E1 LTR MaLR 0 654 405 562 226 26 32 chr12 96220695 96220900 -48061589 - MLT1E1 LTR MaLR -397 257 3 * 688 197 53 0 chr12 96220900 96221031 -48061458 + MLT1F1 LTR MaLR 430 567 0 27 62 0 0 chr12 96221426 96221474 -48061015 + AT_rich Low_complexity Low_complexity 1 48 0 38 39 0 0 chr12 96221842 96221894 -48060595 + AT_rich Low_complexity Low_complexity 1 52 0 325 308 23 70 chr12 96222531 96222703 -48059786 - MIR SINE MIR -50 212 49 180 0 0 0 chr12 96223287 96223307 -48059182 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 186 189 0 0 chr12 96224117 96224154 -48058335 + (TA)n Simple_repeat Simple_repeat 2 38 0 3812 195 32 28 chr12 96224179 96225042 -48057447 - L1MC2 LINE L1 -25 6319 5453 27 0 0 0 chr12 96226513 96226540 -48055949 + GC_rich Low_complexity Low_complexity 1 27 0 272 328 106 20 chr12 96226869 96227067 -48055422 - MIR SINE MIR -7 255 41 698 258 98 86 chr12 96227130 96227687 -48054802 - MER34B LTR ERV1 0 542 3 25 65 0 0 chr12 96228425 96228471 -48054018 + AT_rich Low_complexity Low_complexity 1 46 0 354 213 43 21 chr12 96228889 96228983 -48053506 - MLT2F LTR ERVL -531 132 37 376 231 128 0 chr12 96229230 96229347 -48053142 + L2 LINE L2 2136 2267 -1047 994 307 112 28 chr12 96229347 96230059 -48052430 + L2 LINE L2 2521 3313 0 1414 188 92 123 chr12 96231589 96232157 -48050332 + LTR49 LTR ERV1 1 550 -45 874 259 39 112 chr12 96232186 96232648 -48049841 + MLT1F1 LTR MaLR 9 436 -131 816 279 77 4 chr12 96232648 96232881 -48049608 - MLT1E1 LTR MaLR 0 654 405 562 226 26 32 chr12 96232895 96233100 -48049389 - MLT1E1 LTR MaLR -397 257 3 * 688 197 53 0 chr12 96233100 96233231 -48049258 + MLT1F1 LTR MaLR 430 567 0 27 62 0 0 chr12 96233626 96233674 -48048815 + AT_rich Low_complexity Low_complexity 1 48 0 38 39 0 0 chr12 96234042 96234094 -48048395 + AT_rich Low_complexity Low_complexity 1 52 0 325 308 23 70 chr12 96234731 96234903 -48047586 - MIR SINE MIR -50 212 49 180 0 0 0 chr12 96235487 96235507 -48046982 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 186 189 0 0 chr12 96236317 96236354 -48046135 + (TA)n Simple_repeat Simple_repeat 2 38 0 3812 195 32 28 chr12 96236379 96237242 -48045247 - L1MC2 LINE L1 -25 6319 5453 268 237 0 124 chr12 96238047 96238144 -48044345 - LTR16A LTR ERVL 0 450 366 1091 223 32 12 chr12 96238158 96238405 -48044084 + AluJo SINE Alu 39 290 -22 1037 319 19 6 chr12 96238427 96238747 -48043742 - LTR16A LTR ERVL -65 385 62 1339 331 60 51 chr12 96239368 96240396 -48042093 - ERVL LTR ERVL -887 4109 3430 248 239 14 14 chr12 96240474 96240545 -48041944 - MIR SINE MIR -118 144 74 240 317 37 0 chr12 96240691 96240773 -48041716 + L2 LINE L2 3182 3266 -6 22 0 0 0 chr12 96240926 96240948 -48041541 + AT_rich Low_complexity Low_complexity 1 22 0 2008 118 7 7 chr12 96240956 96241252 -48041237 + AluSx SINE Alu 1 296 -16 2386 74 3 0 chr12 96242266 96242575 -48039914 + AluY SINE Alu 1 310 -1 189 147 0 0 chr12 96242761 96242795 -48039694 + (TA)n Simple_repeat Simple_repeat 1 34 0 310 295 8 8 chr12 96242917 96243046 -48039443 - L1MC/D LINE L1 -1985 5823 5695 227 250 0 0 chr12 96243165 96243221 -48039268 - L1P4 LINE L1 -584 5579 5524 1360 195 32 38 chr12 96243256 96243680 -48038809 + MER21B LTR ERV1 2 478 -385 216 0 0 0 chr12 96243734 96243758 -48038731 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1705 209 63 0 chr12 96243758 96244107 -48038382 - MER21B LTR ERV1 -20 843 473 1009 247 14 5 chr12 96244114 96244337 -48038152 - Charlie1b DNA MER1_type -297 226 2 307 206 200 69 chr12 96245114 96245289 -48037200 - L1MC4a LINE L1 -1877 5931 5734 231 248 39 85 chr12 96245322 96245451 -48037038 - L1M2 LINE L1 -564 5736 5614 2199 241 22 71 chr12 96245485 96246356 -48036133 - L1ME3 LINE L1 -2763 3383 2556 518 256 13 0 chr12 96246356 96246512 -48035977 + L1ME3 LINE L1 3392 3549 -2597 3303 225 11 5 chr12 96246520 96247280 -48035209 + L1P LINE L1 4518 5281 -865 1499 147 24 12 chr12 96248117 96248368 -48034121 - AluSx SINE Alu -1 311 58 180 324 0 0 chr12 96248635 96248672 -48033817 + L2 LINE L2 3147 3183 -89 377 306 21 7 chr12 96248676 96248820 -48033669 - L1M4 LINE L1 -1949 4197 4052 1355 210 20 7 chr12 96248944 96249239 -48033250 + AluJo SINE Alu 1 299 -13 249 86 0 0 chr12 96249670 96249705 -48032784 + tRNA-Cys-TGC tRNA tRNA 1 35 -40 268 253 118 17 chr12 96249884 96250062 -48032427 + L1ME3 LINE L1 3867 4062 -2084 191 36 36 0 chr12 96250132 96250160 -48032329 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 23 0 0 0 chr12 96250187 96250210 -48032279 + AT_rich Low_complexity Low_complexity 1 23 0 1349 193 19 44 chr12 96250378 96250648 -48031841 + MLT2B1 LTR ERVL 1 263 -257 228 240 20 0 chr12 96250681 96250731 -48031758 + (TG)n Simple_repeat Simple_repeat 2 52 0 2534 52 0 0 chr12 96250768 96251074 -48031415 + AluY SINE Alu 1 306 -5 981 276 50 24 chr12 96251090 96251673 -48030816 + L1ME3 LINE L1 4416 5013 -1133 285 204 128 60 chr12 96251708 96251968 -48030521 + L1ME3 LINE L1 5673 5951 -211 1678 109 16 0 chr12 96252021 96252278 -48030211 + L1PA13 LINE L1 5887 6147 -16 501 17 0 0 chr12 96252280 96252338 -48030151 + (CA)n Simple_repeat Simple_repeat 1 58 0 1266 230 10 28 chr12 96252973 96253264 -48029225 - AluJo SINE Alu -26 286 1 717 272 127 87 chr12 96255168 96256235 -48026254 + L1ME1 LINE L1 98 1206 -4913 307 202 19 39 chr12 96256250 96256354 -48026135 + GA-rich Low_complexity Low_complexity 3 104 0 304 203 203 8 chr12 96256442 96256570 -48025919 + L1ME1 LINE L1 2189 2341 -3788 1517 221 53 56 chr12 96256833 96257384 -48025105 + L1ME1 LINE L1 5552 6100 -49 * 2933 120 14 24 chr12 96257372 96257864 -48024625 + L1MA3 LINE L1 5784 6270 -35 23 0 0 0 chr12 96258282 96258305 -48024184 + AT_rich Low_complexity Low_complexity 1 23 0 372 296 48 21 chr12 96258437 96258623 -48023866 + L1ME LINE L1 2918 3108 -3021 234 312 99 63 chr12 96258653 96259067 -48023422 + L1ME LINE L1 5453 5881 -266 24 53 0 0 chr12 96259312 96259350 -48023139 + AT_rich Low_complexity Low_complexity 1 38 0 328 321 40 26 chr12 96259350 96259647 -48022842 + L1ME2 LINE L1 5657 5959 -205 440 250 22 0 chr12 96259729 96259821 -48022668 + MER81 DNA DNA 21 114 0 212 212 136 15 chr12 96260029 96260095 -48022394 - MIR3 SINE MIR -11 197 124 900 231 43 5 chr12 96260111 96260319 -48022170 + MER20 DNA MER1_type 1 216 -3 210 71 0 0 chr12 96260915 96260943 -48021546 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 22 70 0 0 chr12 96261500 96261543 -48020946 + AT_rich Low_complexity Low_complexity 1 43 0 2159 180 37 12 chr12 96262249 96262495 -48019994 + MSTB LTR MaLR 9 270 -156 1981 142 7 26 chr12 96262495 96262804 -48019685 + AluSc SINE Alu 2 304 -5 2159 180 37 12 chr12 96262804 96262963 -48019526 + MSTB LTR MaLR 270 424 -2 189 352 42 0 chr12 96263156 96263227 -48019262 - MIR SINE MIR -118 144 71 1038 216 0 5 chr12 96263549 96263753 -48018736 - MER3 DNA MER1_type -2 207 5 1895 294 73 21 chr12 96263880 96264550 -48017939 + L1MB7 LINE L1 14 718 -6141 278 143 0 0 chr12 96264573 96264615 -48017874 + 5S rRNA rRNA 1 42 -79 1838 267 81 36 chr12 96264890 96266065 -48016424 + L1MB7 LINE L1 1205 2409 -4550 35 41 0 0 chr12 96266211 96266260 -48016229 + AT_rich Low_complexity Low_complexity 1 49 0 1489 244 114 19 chr12 96266293 96267144 -48015345 + L1MB7 LINE L1 2332 3258 -3699 2198 232 29 17 chr12 96267145 96267804 -48014685 + L1MB7 LINE L1 5494 6160 -797 879 223 61 4 chr12 96267849 96268096 -48014393 + L1MB7 LINE L1 6734 6994 -1 258 105 0 0 chr12 96268871 96268909 -48013580 + (T)n Simple_repeat Simple_repeat 1 38 0 270 333 31 0 chr12 96268943 96269105 -48013384 - HAL1 LINE L1 -983 1524 1358 1126 322 23 8 chr12 96269159 96269550 -48012939 + HERV16 LTR ERVL 1875 2271 -2725 280 421 0 7 chr12 96269609 96269749 -48012740 + HERV16 LTR ERVL 2384 2522 -2474 1904 165 74 3 chr12 96269749 96270100 -48012389 + MLT1B LTR MaLR 8 383 -7 1300 326 43 56 chr12 96270112 96270544 -48011945 + HERV16 LTR ERVL 2517 2953 -2043 2401 120 13 16 chr12 96270544 96270920 -48011569 - THE1C LTR MaLR 0 375 1 9498 126 43 21 chr12 96270922 96272465 -48010024 - THE1C-int LTR MaLR -2 1578 1 2527 109 13 19 chr12 96272467 96272842 -48009647 - THE1C LTR MaLR -2 373 1 1300 326 43 56 chr12 96272842 96273320 -48009169 + HERV16 LTR ERVL 2955 3317 -1679 998 316 164 11 chr12 96273387 96274088 -48008401 + HERV16 LTR ERVL 3764 4239 -757 486 351 56 29 chr12 96274979 96275389 -48007100 + LTR16B LTR ERVL 33 453 -11 2365 112 0 0 chr12 96276262 96276575 -48005914 - AluSq SINE Alu 0 313 1 1122 272 106 27 chr12 96277600 96278082 -48004407 + MLT2B1 LTR ERVL 1 520 0 266 0 29 0 chr12 96278685 96278719 -48003770 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 277 222 0 0 chr12 96279377 96279431 -48003058 - L1ME LINE L1 -451 5670 5617 39 0 0 0 chr12 96279836 96279875 -48002614 + AT_rich Low_complexity Low_complexity 1 39 0 318 299 88 54 chr12 96279892 96280096 -48002393 - L1ME LINE L1 -1368 4778 4568 1041 167 34 34 chr12 96282007 96282211 -48000278 + MER20 DNA MER1_type 6 209 -10 899 267 47 75 chr12 96282660 96283161 -47999328 + MER39 LTR ERV1 223 585 0 809 207 70 42 chr12 96283783 96283996 -47998493 + MER20 DNA MER1_type 1 219 0 362 225 45 22 chr12 96284990 96285079 -47997410 - MIR SINE MIR -120 142 52 2033 152 8 8 chr12 96285400 96285761 -47996728 + L1MA10 LINE L1 5973 6333 -1 610 231 31 67 chr12 96285788 96286013 -47996476 - Charlie7 DNA MER1_type -1891 721 505 339 257 73 0 chr12 96286088 96286197 -47996292 - Charlie7 DNA MER1_type -2367 245 129 239 412 10 0 chr12 96286993 96287090 -47995399 - L2 LINE L2 -8 3305 3208 3076 76 7 0 chr12 96287894 96288304 -47994185 - L1PA12 LINE L1 0 6168 5756 2917 114 16 10 chr12 96288304 96288798 -47993691 + L1P4 LINE L1 5199 5697 -471 21 57 0 0 chr12 96288979 96289014 -47993475 + AT_rich Low_complexity Low_complexity 1 35 0 488 93 0 27 chr12 96290493 96290568 -47991921 - L1PA11 LINE L1 -16 6158 6086 250 313 89 27 chr12 96291943 96292055 -47990434 - L3 LINE CR1 -890 687 569 2050 69 0 0 chr12 96293463 96293731 -47988758 - AluY SINE Alu 0 305 38 415 222 80 23 chr12 96293733 96293909 -47988580 + Charlie7 DNA MER1_type 2427 2612 0 2172 107 40 0 chr12 96294434 96294733 -47987756 + AluSx SINE Alu 1 311 -1 1813 164 7 7 chr12 96294746 96295045 -47987444 + AluJb SINE Alu 1 299 -13 555 301 13 40 chr12 96295082 96295308 -47987181 + Charlie8 DNA MER1_type 1 220 -2197 322 254 31 100 chr12 96295506 96295636 -47986853 - L2 LINE L2 -32 3281 3161 467 324 47 39 chr12 96295651 96295907 -47986582 - MIR SINE MIR 0 262 5 462 312 72 49 chr12 96295916 96296326 -47986163 - L2 LINE L2 -196 3117 2698 473 202 56 20 chr12 96296467 96296633 -47985856 + MER63 DNA MER1_type 35 1682 -6 528 342 45 22 chr12 96296721 96296943 -47985546 + MIR SINE MIR 5 231 -31 25 0 0 0 chr12 96297608 96297633 -47984856 + AT_rich Low_complexity Low_complexity 1 25 0 831 169 0 0 chr12 96298109 96298233 -47984256 + FLAM_C SINE Alu 1 124 -19 22 0 0 0 chr12 96298233 96298255 -47984234 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 96298707 96298730 -47983759 + AT_rich Low_complexity Low_complexity 1 23 0 314 283 107 57 chr12 96301077 96301321 -47981168 + L2 LINE L2 3049 3304 -9 266 353 72 7 chr12 96301410 96301549 -47980940 - L2 LINE L2 0 3313 3166 33 56 0 0 chr12 96301919 96301973 -47980516 + AT_rich Low_complexity Low_complexity 1 54 0 207 250 0 0 chr12 96302816 96302856 -47979633 + polypurine Low_complexity Low_complexity 3 42 0 205 411 20 14 chr12 96302879 96303025 -47979464 + MIR SINE MIR 35 181 -81 248 241 19 0 chr12 96304350 96304404 -47978085 - L2 LINE L2 0 3272 3218 1262 307 91 22 chr12 96304467 96305092 -47977397 - L2 LINE L2 -779 2535 1868 442 216 0 34 chr12 96305197 96305285 -47977204 + L2 LINE L2 3184 3268 -4 698 249 167 48 chr12 96305552 96305717 -47976772 + MLT1G LTR MaLR 10 154 -436 288 0 0 0 chr12 96305717 96305749 -47976740 + (TC)n Simple_repeat Simple_repeat 1 32 0 698 249 167 48 chr12 96305749 96305913 -47976576 + MLT1G LTR MaLR 154 378 -212 478 322 69 0 chr12 96308569 96308814 -47973675 - MIR SINE MIR 0 262 1 189 239 246 28 chr12 96310820 96310962 -47971527 - L2 LINE L2 -4 3309 3137 2451 71 7 3 chr12 96311610 96311919 -47970570 - AluY SINE Alu -1 310 1 6058 47 15 0 chr12 96312459 96313207 -47969282 - L1PA5 LINE L1 -81 6073 5315 586 53 0 0 chr12 96313207 96313281 -47969208 + L1PA5 LINE L1 6071 6145 -9 504 284 90 28 chr12 96313495 96313706 -47968783 - MIR SINE MIR -34 228 5 230 183 17 0 chr12 96314993 96315053 -47967436 + (TAA)n Simple_repeat Simple_repeat 1 61 0 497 256 45 45 chr12 96315292 96315468 -47967021 - LTR16A LTR ERVL -6 444 269 226 321 37 56 chr12 96315497 96315659 -47966830 - LTR16A1 LTR ERVL -266 191 33 2088 118 63 26 chr12 96315797 96316146 -47966343 - THE1B LTR MaLR -2 362 1 214 382 83 14 chr12 96316360 96316504 -47965985 - L2 LINE L2 -17 3255 3102 1048 196 65 39 chr12 96316602 96316724 -47965765 - MER74C LTR ERVL -139 419 302 2323 81 3 10 chr12 96316724 96317032 -47965457 - AluY SINE Alu -5 306 1 1048 196 65 39 chr12 96317032 96317088 -47965401 - MER74C LTR ERVL -256 302 249 2428 223 7 45 chr12 96317088 96317662 -47964827 - MLT2B3 LTR ERVL 0 554 3 1048 196 65 39 chr12 96317662 96317822 -47964667 - MER74C LTR ERVL -309 249 4 949 210 0 58 chr12 96318316 96318521 -47963968 + AluJo SINE Alu 1 193 -119 2456 165 101 15 chr12 96318521 96318986 -47963503 - MER61D LTR ERV1 0 501 3 548 194 0 0 chr12 96318986 96319079 -47963410 + AluJo SINE Alu 188 280 -32 822 130 0 0 chr12 96319091 96319222 -47963267 + (GGAA)n Simple_repeat Simple_repeat 4 134 0 2423 275 45 15 chr12 96319946 96320677 -47961812 + Charlie7 DNA MER1_type 1486 2249 -363 2507 40 3 3 chr12 96320677 96320977 -47961512 + AluY SINE Alu 1 300 -11 2423 275 45 15 chr12 96320977 96321119 -47961370 + Charlie7 DNA MER1_type 2249 2385 -227 677 210 14 7 chr12 96321267 96321405 -47961084 + MER8 DNA MER2_type 100 238 -1 300 27 0 0 chr12 96321405 96321442 -47961047 + (CA)n Simple_repeat Simple_repeat 2 38 0 788 259 19 23 chr12 96321514 96321730 -47960759 - MER20 DNA MER1_type -2 217 3 342 267 55 59 chr12 96322303 96322576 -47959913 + L1ME4a LINE L1 5846 6117 -4 1080 261 65 22 chr12 96324280 96324648 -47957841 - MLT2C1 LTR ERVL 0 397 14 205 327 99 0 chr12 96324897 96324998 -47957491 + MIR SINE MIR 42 152 -56 2213 208 6 42 chr12 96325127 96325647 -47956842 + MLT1D LTR MaLR 5 505 0 1141 307 85 25 chr12 96325673 96326155 -47956334 + MLT1J LTR MaLR 1 511 0 3076 189 20 18 chr12 96326758 96327272 -47955217 + MLT2B3 LTR ERVL 1 518 -36 728 68 10 0 chr12 96327272 96327375 -47955114 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 3076 189 20 18 chr12 96327375 96327406 -47955083 + MLT2B3 LTR ERVL 518 547 -7 306 329 14 21 chr12 96328323 96328463 -47954026 - LTR16A LTR ERVL -294 156 18 1386 226 107 24 chr12 96329156 96329616 -47952873 - L1MA9 LINE L1 -38 6274 5777 201 71 0 106 chr12 96329699 96329812 -47952677 + (TA)n Simple_repeat Simple_repeat 1 101 0 490 91 0 86 chr12 96329828 96330025 -47952464 + (TA)n Simple_repeat Simple_repeat 1 180 0 411 118 30 59 chr12 96330075 96330244 -47952245 + (TATATG)n Simple_repeat Simple_repeat 1 164 0 286 190 0 51 chr12 96330253 96330332 -47952157 + (TA)n Simple_repeat Simple_repeat 2 76 0 600 207 136 0 chr12 96330354 96330494 -47951995 - L1M2 LINE L1 -499 5813 5655 505 234 42 117 chr12 96330493 96330737 -47951752 - L1M4 LINE L1 -3199 2947 2762 * 17929 34 2 5 chr12 96330737 96333715 -47948774 + L1PA4 LINE L1 3176 6165 0 505 234 42 117 chr12 96333715 96333998 -47948491 - L1M4 LINE L1 -3384 2762 2459 219 225 0 84 chr12 96334046 96334117 -47948372 + L2 LINE L2 3184 3248 -65 842 216 58 41 chr12 96334230 96334521 -47947968 + L1MA9 LINE L1 5979 6274 -38 28 0 0 0 chr12 96334521 96334549 -47947940 + AT_rich Low_complexity Low_complexity 1 28 0 419 365 34 28 chr12 96334549 96334872 -47947617 + ERVL LTR ERVL 4807 5131 -633 1196 223 84 46 chr12 96335099 96335552 -47946937 - MER34-int LTR ERV1 -2768 2168 1699 347 155 74 14 chr12 96335552 96335634 -47946855 + (TA)n Simple_repeat Simple_repeat 2 78 -80 2484 62 0 0 chr12 96335634 96335924 -47946565 + AluY SINE Alu 1 290 -21 347 155 74 14 chr12 96335924 96335989 -47946500 + (TA)n Simple_repeat Simple_repeat 78 158 0 24 32 0 0 chr12 96335994 96336025 -47946464 + AT_rich Low_complexity Low_complexity 1 31 0 291 181 32 21 chr12 96336045 96336139 -47946350 + (TA)n Simple_repeat Simple_repeat 1 95 0 1700 159 24 12 chr12 96336141 96336171 -47946318 + ERVL LTR ERVL 5427 5455 -309 2333 181 49 91 chr12 96336171 96336928 -47945561 - LTR8A LTR ERV1 -2 725 1 1700 159 24 12 chr12 96336928 96337230 -47945259 + ERVL LTR ERVL 5455 5763 -1 900 165 74 6 chr12 96337075 96337251 -47945238 + Ricksha DNA DNA 185 372 -882 * 2319 222 86 18 chr12 96337256 96337881 -47944608 - MER34-int LTR ERV1 -3641 1295 628 328 237 15 92 chr12 96337980 96338111 -47944378 - MER34-int LTR ERV1 -4542 394 274 255 196 0 0 chr12 96338176 96338222 -47944267 - MER34-int LTR ERV1 -5413 918 873 425 304 23 23 chr12 96338651 96338822 -47943667 - MER34-int LTR ERV1 -6156 645 475 408 296 41 36 chr12 96339009 96339229 -47943260 - MER34-int LTR ERV1 -6110 221 1 1548 138 0 0 chr12 96339743 96339968 -47942521 + AluSg/x SINE Alu 79 303 -9 543 35 35 12 chr12 96340630 96340716 -47941773 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 254 290 14 14 chr12 96341060 96341129 -47941360 - L2 LINE L2 0 3272 3204 229 350 21 21 chr12 96342112 96342209 -47940280 - L2 LINE L2 -298 2974 2878 315 341 59 0 chr12 96342259 96342394 -47940095 + MER117 DNA MER1_type 49 191 -6 1397 178 0 30 chr12 96342587 96342689 -47939800 + AluJo SINE Alu 43 146 -166 1890 143 49 35 chr12 96342689 96343059 -47939430 - THE1C LTR MaLR 0 375 1 1397 178 0 30 chr12 96343059 96343226 -47939263 + AluJo SINE Alu 146 304 -8 616 288 110 37 chr12 96343226 96343525 -47938964 - MER34 LTR ERV1 -77 465 145 1242 128 0 0 chr12 96343584 96343763 -47938726 - THE1C LTR MaLR -196 179 1 8887 115 108 10 chr12 96343763 96345202 -47937287 - THE1C-int LTR MaLR 0 1580 1 1927 182 27 8 chr12 96345202 96345570 -47936919 - THE1C LTR MaLR 0 375 1 631 230 42 59 chr12 96345570 96345854 -47936635 - MER34-int LTR ERV1 -157 4779 4571 291 235 0 47 chr12 96345885 96345970 -47936519 + MER31-int LTR ERV1 2621 2701 -2235 6929 204 73 72 chr12 96346118 96348542 -47933947 - MER34-int LTR ERV1 -823 4113 1686 319 249 71 61 chr12 96348558 96348755 -47933734 - LTR57-int LTR ERVL -3832 1511 1313 296 175 32 0 chr12 96348958 96349021 -47933468 - MER34-int LTR ERV1 -7039 1081 1017 1242 180 8 80 chr12 96349104 96349459 -47933030 - LTR49-int LTR ERV1 -4398 538 301 237 254 36 0 chr12 96349461 96349516 -47932973 - MER67B LTR ERV1 -462 199 143 323 191 19 67 chr12 96349582 96349687 -47932802 - LTR49-int LTR ERV1 -4860 1471 1372 388 206 235 0 chr12 96349774 96349876 -47932613 - LTR49-int LTR ERV1 -6156 645 520 281 132 38 0 chr12 96349887 96349940 -47932549 - LTR49-int LTR ERV1 -4955 1376 1322 760 266 144 35 chr12 96350207 96350583 -47931906 - MER34 LTR ERV1 0 542 126 1477 203 21 14 chr12 96351059 96351349 -47931140 + AluJb SINE Alu 12 303 -9 2726 158 13 57 chr12 96351837 96352380 -47930109 - MLT2B1 LTR ERVL 0 520 2 339 313 74 18 chr12 96352470 96352633 -47929856 + MIR SINE MIR 69 240 -22 208 288 22 58 chr12 96354643 96354782 -47927707 + L2 LINE L2 3165 3298 -15 219 312 55 28 chr12 96355244 96355353 -47927136 - L2 LINE L2 -3 3310 3199 2045 200 26 13 chr12 96355447 96355907 -47926582 - MER31B LTR ERV1 0 466 1 270 226 35 0 chr12 96356056 96356129 -47926360 + MIR SINE MIR 72 146 -62 236 170 19 38 chr12 96356463 96356516 -47925973 + L2 LINE L2 3262 3313 0 191 390 30 30 chr12 96357370 96357470 -47925019 + L2 LINE L2 3020 3119 -153 2691 151 7 11 chr12 96357909 96358358 -47924131 - L1MB1 LINE L1 -310 5879 5433 1535 160 26 36 chr12 96358358 96358658 -47923831 + L1MB1 LINE L1 5865 6168 0 22 88 0 0 chr12 96361525 96361582 -47920907 + AT_rich Low_complexity Low_complexity 1 57 0 2247 202 57 26 chr12 96361597 96362053 -47920436 - MLT2B1 LTR ERVL -50 470 1 181 302 35 23 chr12 96363106 96363192 -47919297 - MIR SINE MIR -128 134 48 2506 119 5 19 chr12 96363242 96363611 -47918878 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr12 96364048 96364071 -47918418 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr12 96364193 96364228 -47918261 + AT_rich Low_complexity Low_complexity 1 35 0 22 70 0 0 chr12 96364728 96364771 -47917718 + AT_rich Low_complexity Low_complexity 1 43 0 561 200 26 0 chr12 96365139 96365254 -47917235 - L2 LINE L2 0 3313 3196 1506 291 173 41 chr12 96365307 96365574 -47916915 + HAL1 LINE L1 283 513 -1994 1117 206 63 77 chr12 96365574 96365952 -47916537 + MLT1A2 LTR MaLR 2 374 0 1506 291 173 41 chr12 96365952 96366515 -47915974 + HAL1 LINE L1 513 1000 -1507 186 103 0 0 chr12 96366515 96366544 -47915945 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1506 291 173 41 chr12 96366544 96366963 -47915526 + HAL1 LINE L1 1000 1362 -1145 1149 306 42 54 chr12 96366963 96367632 -47914857 - MLT2F LTR ERVL 0 663 3 1506 291 173 41 chr12 96367632 96367868 -47914621 + HAL1 LINE L1 1362 1966 -541 406 281 24 6 chr12 96367893 96368060 -47914429 + HAL1 LINE L1 2047 2216 -291 4331 211 96 19 chr12 96368128 96370239 -47912250 - L1MC2 LINE L1 -12 6332 4053 258 272 37 42 chr12 96370245 96370462 -47912027 + HAL1 LINE L1 2265 2480 -27 200 205 24 24 chr12 96370476 96370559 -47911930 + (TAA)n Simple_repeat Simple_repeat 1 83 0 904 242 107 0 chr12 96371564 96371779 -47910710 - MLT1E LTR MaLR -8 585 348 823 280 21 33 chr12 96371797 96372040 -47910449 - MLT1E LTR MaLR -353 240 1 1598 194 17 0 chr12 96372245 96372407 -47910082 - AluJo SINE Alu -13 299 128 378 0 0 0 chr12 96372407 96372449 -47910040 + (TA)n Simple_repeat Simple_repeat 2 43 0 1598 194 17 0 chr12 96372449 96372580 -47909909 - AluJo SINE Alu -184 128 1 583 292 67 46 chr12 96372629 96373260 -47909229 + L1ME3A LINE L1 614 1257 -4862 588 283 86 9 chr12 96373614 96374086 -47908403 + L1ME3A LINE L1 4914 5422 -723 510 293 144 35 chr12 96374087 96374463 -47908026 + L1ME3A LINE L1 5517 5933 -220 198 347 74 2 chr12 96374522 96374727 -47907762 - MIR SINE MIR -2 260 3 396 311 42 18 chr12 96375076 96375243 -47907246 - MIR SINE MIR -40 222 52 286 202 21 26 chr12 96375674 96375771 -47906718 + MLT1I LTR MaLR 91 154 -255 240 247 118 0 chr12 96375935 96376028 -47906461 + MLT1I LTR MaLR 281 384 -25 714 202 0 0 chr12 96377130 96377249 -47905240 - FLAM_C SINE Alu -24 119 1 379 291 74 20 chr12 96377373 96377617 -47904872 + L1ME4a LINE L1 5104 5360 -786 721 150 15 30 chr12 96377625 96377878 -47904611 + FLAM_C SINE Alu 1 251 0 947 173 0 0 chr12 96377884 96378040 -47904449 + FRAM SINE Alu 1 151 -25 261 265 68 26 chr12 96378435 96378552 -47903937 + L1ME4a LINE L1 5951 6072 -49 183 152 0 65 chr12 96379622 96379668 -47902821 + L2 LINE L2 1588 1630 -1684 1236 231 54 38 chr12 96380103 96380475 -47902014 + MLT1C LTR MaLR 1 378 -89 506 229 99 26 chr12 96381749 96381941 -47900548 - MLT1J1 LTR MaLR -2 444 239 35 63 0 0 chr12 96382091 96382154 -47900335 + AT_rich Low_complexity Low_complexity 1 63 0 724 127 30 26 chr12 96382467 96382734 -47899755 + GA-rich Low_complexity Low_complexity 1 268 0 214 305 105 19 chr12 96384491 96384596 -47897893 + L2 LINE L2 3149 3262 -10 527 254 176 12 chr12 96384618 96384783 -47897706 + MLT1D LTR MaLR 1 192 -313 2090 121 52 30 chr12 96384852 96385217 -47897272 + THE1C LTR MaLR 3 375 0 1467 191 35 65 chr12 96385316 96385718 -47896771 - MLT1B LTR MaLR 0 390 1 23 0 0 0 chr12 96386255 96386278 -47896211 + AT_rich Low_complexity Low_complexity 1 23 0 220 313 223 42 chr12 96387708 96387901 -47894588 - MIR SINE MIR -18 244 19 227 346 40 10 chr12 96388050 96388151 -47894338 - L2 LINE L2 -995 2319 2216 422 281 70 12 chr12 96388297 96388468 -47894021 - LTR50 LTR ERVL -111 684 504 1305 264 13 6 chr12 96388472 96388786 -47893703 - MER77 LTR ERV1 -2 603 288 790 189 26 130 chr12 96388889 96389196 -47893293 + MLT1-int LTR MaLR 613 887 -484 252 229 265 0 chr12 96389361 96389444 -47893045 - LTR50 LTR ERVL -289 506 402 2512 242 59 5 chr12 96389472 96390035 -47892454 - MLT1E3 LTR MaLR 0 624 32 705 227 72 10 chr12 96390037 96390231 -47892258 - LTR50 LTR ERVL -583 212 7 1930 178 89 5 chr12 96390374 96390767 -47891722 + MSTA LTR MaLR 3 428 0 8881 148 19 34 chr12 96390769 96392371 -47890118 + MSTA-int LTR MaLR 3 1580 0 2059 135 82 56 chr12 96392371 96392785 -47889704 + MSTA LTR MaLR 1 425 -3 767 314 118 39 chr12 96393862 96394244 -47888245 + L2 LINE L2 2893 3304 -9 325 323 66 12 chr12 96394341 96394508 -47887981 - MIR SINE MIR -5 257 82 396 349 40 7 chr12 96394780 96394929 -47887560 - MER91A DNA MER1_type -24 172 19 470 303 121 29 chr12 96394938 96395252 -47887237 + L2 LINE L2 2835 3177 -136 293 168 69 0 chr12 96397060 96397161 -47885328 + (TA)n Simple_repeat Simple_repeat 1 108 0 586 316 84 29 chr12 96397176 96397593 -47884896 - MLT1J LTR MaLR -35 476 37 190 194 32 0 chr12 96397646 96397708 -47884781 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 231 114 0 0 chr12 96397728 96397763 -47884726 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr12 96397844 96397865 -47884624 + AT_rich Low_complexity Low_complexity 1 21 0 7840 168 4 21 chr12 96398338 96400654 -47881835 - L1P3 LINE L1 -4140 2321 2 1233 201 81 49 chr12 96401274 96401682 -47880807 + MER76 LTR ERV 1 443 -245 707 290 83 27 chr12 96401854 96402239 -47880250 - L2 LINE L2 -229 3084 2678 1556 211 83 0 chr12 96403158 96403495 -47878994 - MLT1A1 LTR MaLR 0 365 1 1656 164 63 13 chr12 96403801 96404180 -47878309 + L1MC3 LINE L1 7368 7765 -20 22 0 0 0 chr12 96404269 96404291 -47878198 + AT_rich Low_complexity Low_complexity 1 22 0 541 265 66 33 chr12 96404667 96404848 -47877641 + MIR SINE MIR 64 250 -12 1334 189 52 62 chr12 96404851 96405237 -47877252 - MER39 LTR ERV1 -1 706 325 4417 143 8 14 chr12 96405240 96405400 -47877089 - MER50 LTR ERV1 -23 711 552 4893 70 77 0 chr12 96405400 96406039 -47876450 - LTR12 LTR ERV1 0 688 1 4417 143 8 14 chr12 96406039 96406593 -47875896 - MER50 LTR ERV1 -182 552 1 324 212 242 10 chr12 96406598 96406697 -47875792 - MER34 LTR ERV1 -420 122 1 2474 147 71 2 chr12 96407040 96407463 -47875026 + LTR47A LTR ERVL 1 452 0 219 237 142 95 chr12 96407649 96407860 -47874629 - MIR SINE MIR -10 252 32 260 303 53 0 chr12 96407888 96407964 -47874525 - L2 LINE L2 -56 3216 3137 384 272 257 10 chr12 96408225 96408427 -47874062 + MIR SINE MIR 1 252 -10 196 93 163 0 chr12 96408443 96408486 -47874003 + L2 LINE L2 3208 3257 -15 24 67 0 0 chr12 96409192 96409237 -47873252 + AT_rich Low_complexity Low_complexity 1 45 0 234 0 0 0 chr12 96410650 96410676 -47871813 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1857 270 96 55 chr12 96410847 96411832 -47870657 + L1ME LINE L1 26 1061 -5022 605 242 72 5 chr12 96411825 96412048 -47870441 + L1ME LINE L1 2080 2317 -3763 * 7740 227 40 15 chr12 96412054 96415858 -47866631 + L1MA4A LINE L1 71 5057 -2151 3551 158 39 39 chr12 96415981 96416590 -47865899 + L1MA4A LINE L1 5845 6476 -889 2139 161 56 12 chr12 96416590 96417000 -47865489 + MSTA LTR MaLR 1 428 0 3551 158 39 39 chr12 96417000 96417501 -47864988 + L1MA4A LINE L1 6476 6976 -389 495 179 0 12 chr12 96417506 96417590 -47864899 + MLT1C LTR MaLR 382 464 -3 515 147 10 49 chr12 96417602 96417704 -47864785 + MLT1F1 LTR MaLR 470 567 0 2088 138 44 5 chr12 96417870 96418253 -47864236 - L1MA5 LINE L1 -2 6298 5901 22 88 0 0 chr12 96418354 96418411 -47864078 + AT_rich Low_complexity Low_complexity 1 57 0 484 315 54 46 chr12 96469051 96469292 -47813197 - MLT1L LTR MaLR -299 316 74 284 274 27 0 chr12 96470047 96470120 -47812369 + MIR3 SINE MIR 129 203 -5 2023 67 25 79 chr12 96470476 96470792 -47811697 + AluY SINE Alu 1 299 -12 225 333 82 59 chr12 96471660 96471795 -47810694 + MIR3 SINE MIR 5 142 -66 34 55 0 0 chr12 96472081 96472136 -47810353 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr12 96472245 96472273 -47810216 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 96473105 96473127 -47809362 + AT_rich Low_complexity Low_complexity 1 22 0 1601 193 0 14 chr12 96473446 96473741 -47808748 + AluJb SINE Alu 1 291 -21 438 20 0 0 chr12 96473744 96473795 -47808694 + (TA)n Simple_repeat Simple_repeat 2 52 0 2291 57 0 0 chr12 96475545 96475858 -47806631 + AluY SINE Alu 1 313 0 2401 96 3 3 chr12 96476171 96476516 -47805973 - L1PB1 LINE L1 0 6151 5807 239 119 0 0 chr12 96476592 96476634 -47805855 - LTR66 LTR ERVL -171 439 398 904 139 0 28 chr12 96476639 96476783 -47805706 - AluSq/x SINE Alu -173 140 1 1924 212 10 34 chr12 96476785 96477281 -47805208 - L1 LINE L1 -2249 3897 3414 1081 266 150 35 chr12 96477352 96477945 -47804544 + MLT1E1 LTR MaLR 1 654 0 310 292 131 0 chr12 96478510 96478647 -47803842 + MIR SINE MIR 92 246 -16 310 346 94 6 chr12 96478735 96478894 -47803595 - MIR SINE MIR -72 190 18 7481 247 59 32 chr12 96478943 96481280 -47801209 - L1M4 LINE L1 -891 5255 2831 1240 186 42 7 chr12 96481280 96481565 -47800924 - L1MA4 LINE L1 -11 6289 5995 7481 247 59 32 chr12 96481565 96482027 -47800462 - L1M4 LINE L1 -3315 2831 2383 1449 194 6 63 chr12 96482383 96482718 -47799771 - MLT1A1 LTR MaLR -49 316 1 409 333 39 20 chr12 96482735 96482888 -47799601 - LTR40a LTR ERVL -185 334 179 198 156 0 0 chr12 96482904 96482949 -47799540 + T-rich Low_complexity Low_complexity 1 45 0 5189 143 3 20 chr12 96483021 96484070 -47798419 - L1PA16 LINE L1 -8 6158 5105 526 172 98 16 chr12 96484070 96484192 -47798297 - LTR40a LTR ERVL -386 133 2 1044 322 130 26 chr12 96484300 96485137 -47797352 - L2 LINE L2 -69 3244 2311 2108 108 0 0 chr12 96485332 96485645 -47796844 + AluSc SINE Alu 4 316 0 315 412 55 16 chr12 96486173 96486428 -47796061 - L2 LINE L2 -54 3218 2954 280 324 132 57 chr12 96486441 96486759 -47795730 + L2 LINE L2 2959 3300 -13 258 235 35 47 chr12 96487589 96487674 -47794815 - MIR3 SINE MIR -8 200 117 21 82 0 0 chr12 96487972 96488021 -47794468 + AT_rich Low_complexity Low_complexity 1 49 0 23 68 0 0 chr12 96489097 96489141 -47793348 + AT_rich Low_complexity Low_complexity 1 44 0 1741 163 74 14 chr12 96489895 96490245 -47792244 - THE1C LTR MaLR 0 375 5 9562 142 28 8 chr12 96490249 96491797 -47790692 - THE1C-int LTR MaLR 0 1580 1 1556 176 60 46 chr12 96491797 96492167 -47790322 - THE1C LTR MaLR 0 375 1 416 313 48 29 chr12 96493104 96493312 -47789177 - L1ME LINE L1 -396 5774 5563 2048 153 31 31 chr12 96493404 96493821 -47788668 - L1MA3 LINE L1 -1 7723 7307 1209 185 0 5 chr12 96493821 96494026 -47788463 - AluJb SINE Alu -102 210 7 19690 174 56 12 chr12 96494032 96494700 -47787789 - L1MA3 LINE L1 -477 7247 6610 1584 130 126 4 chr12 96494700 96494999 -47787490 - AluSx SINE Alu 0 331 1 19690 174 56 12 chr12 96494999 96501158 -47781331 - L1MA3 LINE L1 -1114 6610 88 261 0 0 0 chr12 96501158 96501187 -47781302 + (TG)n Simple_repeat Simple_repeat 2 30 0 19690 174 56 12 chr12 96501187 96501271 -47781218 - L1MA3 LINE L1 -7636 88 9 241 305 36 18 chr12 96501264 96501431 -47781058 - L1ME LINE L1 -707 5455 5286 * 6299 191 24 28 chr12 96501741 96503351 -47779138 + L1M2 LINE L1 3899 5506 -680 2962 158 15 35 chr12 96503351 96503525 -47778964 + L1PB4 LINE L1 5569 5745 -411 1787 126 53 7 chr12 96503525 96503810 -47778679 + AluSx SINE Alu 6 303 -9 2962 158 15 35 chr12 96503810 96504235 -47778254 + L1PB4 LINE L1 5745 6156 0 6299 191 24 28 chr12 96504235 96504279 -47778210 + L1M2 LINE L1 5506 5549 -637 306 374 40 18 chr12 96504407 96504634 -47777855 - L1MEc LINE L1 -4241 2155 1924 317 255 92 92 chr12 96505078 96505360 -47777129 + L1ME4a LINE L1 5760 6041 -80 657 186 0 0 chr12 96505374 96505492 -47776997 + L1 LINE L1 4745 4862 -1284 222 37 0 0 chr12 96505989 96506016 -47776473 + (T)n Simple_repeat Simple_repeat 1 27 0 330 312 56 48 chr12 96506436 96506897 -47775592 - L1M4 LINE L1 -2431 3715 3251 585 291 111 13 chr12 96507034 96507422 -47775067 - L1M4 LINE L1 -3243 2903 2478 37 0 0 0 chr12 96507422 96507459 -47775030 + AT_rich Low_complexity Low_complexity 1 37 0 415 315 116 17 chr12 96507486 96507727 -47774762 - L1M4 LINE L1 -3689 2457 2193 22 35 0 0 chr12 96508853 96508882 -47773607 + AT_rich Low_complexity Low_complexity 1 29 0 312 346 133 14 chr12 96508963 96509174 -47773315 + MIR SINE MIR 15 250 -12 225 318 0 0 chr12 96510261 96510327 -47772162 + L3 LINE CR1 1507 1572 -5 477 276 103 39 chr12 96510603 96510772 -47771717 + MLT1I LTR MaLR 194 380 -29 2181 112 74 0 chr12 96510772 96511111 -47771378 - THE1B LTR MaLR 0 364 1 477 276 103 39 chr12 96511111 96511144 -47771345 + MLT1I LTR MaLR 380 409 0 578 264 21 74 chr12 96512398 96512640 -47769849 + MIR SINE MIR 1 229 -33 2187 112 16 3 chr12 96514230 96514534 -47767955 + AluSx SINE Alu 1 308 -4 284 380 27 16 chr12 96514969 96515156 -47767333 - MER5A DNA MER1_type 0 189 1 268 317 145 0 chr12 96515195 96515340 -47767149 + MIR SINE MIR 65 230 -32 894 275 42 28 chr12 96515343 96515627 -47766862 + MLT1J2 LTR MaLR 1 288 -162 24 32 0 0 chr12 96516303 96516334 -47766155 + AT_rich Low_complexity Low_complexity 1 31 0 307 291 60 17 chr12 96516614 96516731 -47765758 + MER117 DNA MER1_type 19 140 -57 1559 85 112 54 chr12 96516965 96517225 -47765264 + AluY SINE Alu 35 309 -2 41 66 0 0 chr12 96518764 96518840 -47763649 + AT_rich Low_complexity Low_complexity 1 76 0 25 0 0 0 chr12 96519237 96519262 -47763227 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr12 96519435 96519477 -47763012 + AT_rich Low_complexity Low_complexity 1 42 0 264 139 0 0 chr12 96520309 96520352 -47762137 - L1MC5 LINE L1 -178 7783 7741 303 179 75 0 chr12 96520590 96520657 -47761832 - L1MCa LINE L1 -4360 2066 1995 300 321 0 0 chr12 96520592 96520676 -47761813 + L1MC4 LINE L1 6615 6698 -1344 * 339 272 0 22 chr12 96520675 96520767 -47761722 - L1MC4 LINE L1 -1339 6703 6614 2085 127 0 0 chr12 96520772 96521056 -47761433 - AluSc SINE Alu -20 289 6 293 299 67 15 chr12 96521350 96521484 -47761005 + MIR3 SINE MIR 32 172 -36 208 209 15 15 chr12 96522051 96522118 -47760371 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 348 24 0 0 chr12 96522730 96522771 -47759718 + (CA)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr12 96523187 96523210 -47759279 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr12 96523497 96523529 -47758960 + AT_rich Low_complexity Low_complexity 1 32 0 603 102 0 0 chr12 96523614 96523702 -47758787 + (TTTC)n Simple_repeat Simple_repeat 1 88 0 1766 154 165 8 chr12 96523898 96524267 -47758222 - MSTA LTR MaLR -1 427 1 1992 145 21 43 chr12 96524423 96524796 -47757693 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chr12 96525551 96525573 -47756916 + (CA)n Simple_repeat Simple_repeat 1 22 0 409 211 84 42 chr12 96525705 96525847 -47756642 - MER113 DNA MER1_type? -187 334 187 2115 129 3 0 chr12 96525887 96526196 -47756293 + AluSx SINE Alu 1 310 -2 1876 112 23 0 chr12 96526207 96526465 -47756024 + AluSg SINE Alu 32 295 -15 23 0 0 0 chr12 96527574 96527597 -47754892 + AT_rich Low_complexity Low_complexity 1 23 0 1531 98 0 5 chr12 96528657 96528872 -47753617 + THE1B-int LTR MaLR 1367 1580 0 1871 147 47 39 chr12 96528872 96529233 -47753256 + THE1B LTR MaLR 1 364 0 227 321 0 0 chr12 96529257 96529313 -47753176 - L2 LINE L2 -6 3266 3211 219 284 9 95 chr12 96529536 96529652 -47752837 - MER5A DNA MER1_type -37 152 47 215 152 22 0 chr12 96529817 96529863 -47752626 + T-rich Low_complexity Low_complexity 4 50 0 188 204 61 0 chr12 96529915 96529964 -47752525 + L2 LINE L2 3221 3272 0 333 0 0 0 chr12 96530002 96530039 -47752450 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1465 24 0 0 chr12 96530039 96530208 -47752281 - L1PA5 LINE L1 -18 6136 5968 258 223 71 18 chr12 96530481 96530593 -47751896 + L1ME LINE L1 5197 5314 -832 802 176 8 0 chr12 96530669 96530800 -47751689 + FLAM_C SINE Alu 1 132 -1 442 316 79 13 chr12 96530860 96531158 -47751331 + L1ME LINE L1 5470 5726 -395 24 77 0 0 chr12 96531808 96531860 -47750629 + AT_rich Low_complexity Low_complexity 1 52 0 577 296 22 64 chr12 96531889 96532156 -47750333 + MLT1H LTR MaLR 88 343 -206 1875 168 42 32 chr12 96532982 96533533 -47748956 - MLT2A2 LTR ERVL 0 554 1 497 306 115 17 chr12 96533817 96534278 -47748211 + MLT1H LTR MaLR 5 404 -5 1299 208 46 58 chr12 96534483 96534878 -47747611 + MLT1B LTR MaLR 1 390 0 250 179 71 18 chr12 96535240 96535296 -47747193 + MER5A DNA MER1_type 130 188 -1 3310 256 18 45 chr12 96535655 96536556 -47745933 - L1M4b LINE L1 -5973 886 11 1744 242 12 7 chr12 96536558 96536976 -47745513 - L1ME LINE L1 -431 5735 5316 2006 128 13 3 chr12 96536983 96537281 -47745208 - AluSx SINE Alu -11 301 1 239 0 0 31 chr12 96537287 96537319 -47745170 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr12 96537555 96537577 -47744912 + AT_rich Low_complexity Low_complexity 1 22 0 362 299 78 64 chr12 96538781 96538985 -47743504 - MLT1K LTR MaLR -359 229 23 231 332 62 67 chr12 96539161 96539369 -47743120 - MLT1I LTR MaLR -105 304 98 6729 94 0 0 chr12 96539712 96540655 -47741834 + L1PA12 LINE L1 2995 3942 -3642 23 0 0 0 chr12 96540701 96540724 -47741765 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr12 96540779 96540817 -47741672 + AT_rich Low_complexity Low_complexity 1 38 0 1298 194 18 110 chr12 96541136 96541537 -47740952 + MLT1A1 LTR MaLR 2 365 0 21 57 0 0 chr12 96541661 96541696 -47740793 + AT_rich Low_complexity Low_complexity 1 35 0 219 397 25 8 chr12 96545002 96545123 -47737366 - L2 LINE L2 -9 3263 3141 327 19 38 19 chr12 96545707 96545760 -47736729 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 350 321 58 50 chr12 96546393 96546736 -47735753 + MLT1J LTR MaLR 108 453 -58 1619 203 15 6 chr12 96547626 96547968 -47734521 - MLT2D LTR ERVL -48 349 1 308 306 82 0 chr12 96548579 96548677 -47733812 + MIR SINE MIR 70 175 -87 210 118 0 0 chr12 96548708 96548742 -47733747 + (TA)n Simple_repeat Simple_repeat 2 35 0 438 266 46 0 chr12 96548746 96548855 -47733634 + Tigger3(Golem) DNA MER2_type 3 116 -2913 * 4794 147 47 11 chr12 96548852 96549724 -47732765 + Tigger3(Golem) DNA MER2_type 2118 3020 -9 800 191 25 94 chr12 96550138 96550373 -47732116 - MER20 DNA MER1_type 0 219 1 375 260 10 10 chr12 96551910 96552010 -47730479 + LTR16B LTR ERVL 365 464 0 225 65 0 0 chr12 96552388 96552419 -47730070 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr12 96552501 96552523 -47729966 + (TG)n Simple_repeat Simple_repeat 2 23 0 530 325 168 16 chr12 96552844 96553226 -47729263 + L2 LINE L2 2874 3313 0 757 239 28 6 chr12 96553432 96553612 -47728877 + MER5A DNA MER1_type 1 184 -5 232 274 0 0 chr12 96555733 96555795 -47726694 - MIR SINE MIR -70 192 131 316 266 70 86 chr12 96556780 96557024 -47725465 + L1M4 LINE L1 2914 3153 -2993 22 70 0 0 chr12 96557054 96557097 -47725392 + AT_rich Low_complexity Low_complexity 1 43 0 4816 259 74 36 chr12 96557142 96557513 -47724976 + L1MD1 LINE L1 2850 3205 -3037 6390 93 14 0 chr12 96557513 96559175 -47723314 + L1PA8 LINE L1 4494 6172 0 4816 259 74 36 chr12 96559175 96560127 -47722362 + L1MD1 LINE L1 3205 4119 -2123 1991 139 10 0 chr12 96560127 96560436 -47722053 + AluSx SINE Alu 1 312 0 1897 153 0 0 chr12 96560442 96560749 -47721740 + AluSx SINE Alu 1 307 0 4816 259 74 36 chr12 96560749 96561931 -47720558 + L1MD1 LINE L1 4123 5258 -984 1698 175 14 0 chr12 96561931 96562216 -47720273 + AluJo SINE Alu 3 291 -21 4816 259 74 36 chr12 96562216 96562822 -47719667 + L1MD1 LINE L1 5258 6105 -137 2147 118 0 7 chr12 96562822 96563127 -47719362 + AluSx SINE Alu 2 304 -8 4816 259 74 36 chr12 96563127 96563271 -47719218 + L1MD1 LINE L1 6105 6242 0 21 0 0 0 chr12 96563359 96563380 -47719109 + AT_rich Low_complexity Low_complexity 1 21 0 374 277 214 6 chr12 96563739 96563898 -47718591 - MIR SINE MIR -27 235 44 21 0 0 0 chr12 96564388 96564409 -47718080 + AT_rich Low_complexity Low_complexity 1 21 0 1706 157 3 30 chr12 96564544 96564844 -47717645 - AluSx SINE Alu -15 297 6 2833 16 0 0 chr12 96565043 96565361 -47717128 - AluYb8 SINE Alu 0 318 1 436 261 14 7 chr12 96565447 96565585 -47716904 - L1MC/D LINE L1 -2021 5787 5649 399 197 0 31 chr12 96565749 96565876 -47716613 + GA-rich Low_complexity Low_complexity 3 125 0 815 149 0 11 chr12 96565890 96566064 -47716425 + (GGAA)n Simple_repeat Simple_repeat 1 172 0 816 224 71 0 chr12 96566310 96566480 -47716009 + MER5A DNA MER1_type 8 189 0 183 375 0 16 chr12 96618968 96619032 -47663457 + L2 LINE L2 3118 3180 -92 2191 148 60 26 chr12 96619415 96619834 -47662655 + Tigger2a DNA MER2_type 1 433 -1 2182 304 74 24 chr12 96620731 96621196 -47661293 - L2 LINE L2 -16 3297 2856 5164 222 31 39 chr12 96621196 96621890 -47660599 - Tigger3b DNA MER2_type -1797 1231 548 252 0 0 0 chr12 96621890 96621918 -47660571 + (CA)n Simple_repeat Simple_repeat 1 28 0 5164 222 31 39 chr12 96621918 96622460 -47660029 - Tigger3b DNA MER2_type -2480 548 4 2182 304 74 24 chr12 96622460 96623223 -47659266 - L2 LINE L2 -457 2856 1993 1400 67 0 0 chr12 96623513 96623693 -47658796 + L1P LINE L1 4608 4787 -1359 1436 197 49 16 chr12 96623793 96624098 -47658391 - MLT1A1 LTR MaLR -41 324 10 1083 222 133 14 chr12 96625326 96625462 -47657027 - MER69 DNA AcHobo -12 2514 2396 5293 65 3 0 chr12 96625462 96626139 -47656350 + L1PA7 LINE L1 5474 6152 -2 1083 222 133 14 chr12 96626139 96626371 -47656118 - MER69 DNA AcHobo -130 2396 2102 233 222 0 0 chr12 96626471 96626516 -47655973 + L2 LINE L2 3263 3307 -6 6022 55 1 0 chr12 96627065 96627811 -47654678 + L1PA5 LINE L1 5393 6139 -15 217 200 118 9 chr12 96628148 96628258 -47654231 + (TTATA)n Simple_repeat Simple_repeat 1 122 0 2155 140 96 10 chr12 96628295 96628689 -47653800 - MSTA LTR MaLR 0 428 1 1932 144 0 13 chr12 96629289 96629595 -47652894 - AluSx SINE Alu -10 302 1 231 146 0 0 chr12 96629615 96629663 -47652826 - Alu SINE Alu -8 292 245 10172 84 5 0 chr12 96629763 96631993 -47650496 + L1PA7 LINE L1 3929 6152 -2 1469 231 62 76 chr12 96632482 96632757 -47649732 - MER34 LTR ERV1 0 542 277 357 218 26 0 chr12 96632757 96632835 -47649654 + L1PB4 LINE L1 6076 6155 -1 1469 231 62 76 chr12 96632835 96633109 -47649380 - MER34 LTR ERV1 -265 277 1 784 283 103 25 chr12 96633655 96633881 -47648608 + L2 LINE L2 1828 2035 -1279 186 43 0 0 chr12 96633881 96633904 -47648585 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 784 283 103 25 chr12 96633904 96634073 -47648416 + L2 LINE L2 2035 2254 -1060 2338 62 7 13 chr12 96636784 96637088 -47645401 - AluY SINE Alu -9 302 1 7574 31 0 0 chr12 96637235 96638278 -47644211 + L1PA3 LINE L1 5113 6155 0 271 118 15 15 chr12 96638283 96638351 -47644138 + (TAAAA)n Simple_repeat Simple_repeat 3 70 0 235 356 61 17 chr12 96639538 96639653 -47642836 + MIR SINE MIR 30 149 -59 297 0 0 0 chr12 96640139 96640172 -47642317 + (TG)n Simple_repeat Simple_repeat 2 34 0 2741 182 11 38 chr12 96641102 96641635 -47640854 + Tigger1 DNA MER2_type 24 542 -1876 749 109 0 0 chr12 96641630 96641740 -47640749 + Tigger1 DNA MER2_type 729 838 -1580 * 413 294 119 51 chr12 96642664 96643069 -47639420 - MLT1J LTR MaLR -1 449 37 28 48 0 0 chr12 96643385 96643427 -47639062 + AT_rich Low_complexity Low_complexity 1 42 0 180 53 79 0 chr12 96643706 96643744 -47638745 + (TA)n Simple_repeat Simple_repeat 1 41 0 2082 93 62 0 chr12 96643824 96644115 -47638374 - AluY SINE Alu -2 309 1 957 257 56 62 chr12 96644218 96644757 -47637732 - MLT1E LTR MaLR -2 591 6 231 273 122 75 chr12 96644843 96645121 -47637368 - HAL1 LINE L1 -701 1806 1516 239 260 110 10 chr12 96645184 96645284 -47637205 + L1ME LINE L1 5561 5670 -451 704 243 54 43 chr12 96645752 96645937 -47636552 + MER20 DNA MER1_type 30 216 -3 2054 88 3 63 chr12 96646430 96646749 -47635740 - AluY SINE Alu -11 300 1 304 294 63 32 chr12 96648061 96648187 -47634302 + MIR SINE MIR 20 149 -113 245 384 88 8 chr12 96648342 96648467 -47634022 - MIR3 SINE MIR -54 154 20 1804 156 0 13 chr12 96649761 96650069 -47632420 + AluSc SINE Alu 1 304 -5 400 267 85 30 chr12 96650093 96650258 -47632231 - MIR SINE MIR -27 235 62 1685 154 13 30 chr12 96651317 96651615 -47630874 + AluSx SINE Alu 13 305 -7 665 225 60 6 chr12 96652623 96652805 -47629684 + L1MD3 LINE L1 7795 7986 -9 278 206 59 59 chr12 96653938 96654006 -47628483 + L2 LINE L2 3205 3272 0 186 103 0 0 chr12 96654375 96654404 -47628085 + (A)n Simple_repeat Simple_repeat 1 29 0 398 371 52 21 chr12 96654482 96654770 -47627719 + L2 LINE L2 971 1267 -2047 1968 106 0 7 chr12 96655302 96655577 -47626912 - AluSc SINE Alu -36 273 1 1058 274 45 40 chr12 96655636 96656081 -47626408 - L1ME2 LINE L1 -64 6100 5654 722 118 13 3 chr12 96656362 96656517 -47625972 - AluSx SINE Alu -40 270 71 1758 160 85 25 chr12 96656540 96657058 -47625431 - MER51A LTR ERV1 -9 625 3 513 118 0 0 chr12 96657060 96657136 -47625353 - AluSx SINE Alu -237 76 1 1644 181 0 33 chr12 96657324 96657627 -47624862 - AluJo SINE Alu -19 293 1 2247 255 52 37 chr12 96657649 96658813 -47623676 - L1ME1 LINE L1 -5 6161 4987 1032 125 31 10 chr12 96658841 96659033 -47623456 + L1MA4 LINE L1 6100 6295 -5 316 238 12 60 chr12 96661715 96661799 -47620690 + L2 LINE L2 3234 3313 0 363 265 111 72 chr12 96661953 96662134 -47620355 + MIR SINE MIR 74 261 -1 393 351 75 0 chr12 96662466 96662600 -47619889 + MER91A DNA MER1_type 53 196 0 186 271 57 107 chr12 96662728 96662905 -47619584 - L2 LINE L2 -34 3279 3112 188 372 20 27 chr12 96663132 96663280 -47619209 - L2 LINE L2 -1167 2147 2001 210 91 0 0 chr12 96663323 96663356 -47619133 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1740 122 3 77 chr12 96663753 96664126 -47618363 + MER4A LTR ERV1 261 664 0 377 324 47 14 chr12 96664168 96664316 -47618173 + MLT1I LTR MaLR 183 335 -74 1010 265 87 72 chr12 96665345 96665898 -47616591 + MLT1F1 LTR MaLR 1 567 0 24 32 0 0 chr12 96665927 96665958 -47616531 + AT_rich Low_complexity Low_complexity 1 31 0 748 195 79 16 chr12 96666554 96666744 -47615745 + L1MC2 LINE L1 6139 6340 -4 201 74 0 0 chr12 96666920 96666947 -47615542 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 492 77 83 24 chr12 96667414 96667583 -47614906 + (TA)n Simple_repeat Simple_repeat 1 179 0 492 77 83 24 chr12 96667594 96667763 -47614726 + (TA)n Simple_repeat Simple_repeat 1 179 0 421 104 98 6 chr12 96667810 96667973 -47614516 + (TA)n Simple_repeat Simple_repeat 1 178 0 420 317 93 19 chr12 96668026 96668338 -47614151 + L1MC4a LINE L1 5679 6013 -1795 21 0 0 0 chr12 96668452 96668473 -47614016 + AT_rich Low_complexity Low_complexity 1 21 0 421 272 8 16 chr12 96668965 96669090 -47613399 - MER5A DNA MER1_type -10 179 56 1221 147 66 22 chr12 96669091 96669522 -47612967 + LTR54 LTR ERV1 1 510 0 24 0 0 0 chr12 96669636 96669660 -47612829 + AT_rich Low_complexity Low_complexity 1 24 0 184 361 19 19 chr12 96669828 96669986 -47612503 - L2 LINE L2 -499 2815 2658 1452 243 47 76 chr12 96670017 96670550 -47611939 + L1ME1 LINE L1 4828 5375 -791 299 88 0 18 chr12 96670550 96670607 -47611882 + (TA)n Simple_repeat Simple_repeat 1 56 0 1452 243 47 76 chr12 96670607 96670944 -47611545 + L1ME1 LINE L1 5375 5720 -446 2419 70 0 0 chr12 96670944 96671242 -47611247 - AluY SINE Alu -13 298 1 1452 243 47 76 chr12 96671242 96671365 -47611124 + L1ME1 LINE L1 5720 5803 -363 1791 217 44 49 chr12 96671365 96671914 -47610575 - LTR55 LTR ERV -2 546 1 1452 243 47 76 chr12 96671914 96672004 -47610485 + L1ME1 LINE L1 5803 5894 -272 766 147 158 43 chr12 96672015 96672199 -47610290 + MER44D DNA MER2_type 9 483 -126 250 202 0 42 chr12 96672233 96672352 -47610137 + (TA)n Simple_repeat Simple_repeat 1 114 0 401 234 0 21 chr12 96672380 96672474 -47610015 + MER44D DNA MER2_type 495 586 -19 663 273 58 25 chr12 96672501 96672763 -47609726 + L1ME1 LINE L1 5896 6178 0 1311 199 39 25 chr12 96672897 96673232 -47609257 + MSTD LTR MaLR 1 396 0 2081 64 21 0 chr12 96673918 96674198 -47608291 - AluY SINE Alu -25 286 1 210 208 0 0 chr12 96674275 96674323 -47608166 + CT-rich Low_complexity Low_complexity 2 49 0 1976 136 0 10 chr12 96674339 96674641 -47607848 - AluSq SINE Alu -14 299 1 216 368 152 26 chr12 96674768 96675387 -47607102 + L2 LINE L2 1696 2392 -922 1130 144 163 0 chr12 96675417 96675619 -47606870 + AluSq SINE Alu 4 238 -75 235 259 142 65 chr12 96677544 96677729 -47604760 - MIR SINE MIR -14 248 36 1702 93 12 27 chr12 96678459 96678718 -47603771 - THE1C LTR MaLR 0 375 121 483 259 21 21 chr12 96678918 96679061 -47603428 + MIR SINE MIR 101 243 -19 319 24 0 0 chr12 96680605 96680646 -47601843 + L1PA3 LINE L1 6112 6152 -3 206 0 0 65 chr12 96680649 96680680 -47601809 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 257 288 0 0 chr12 96682070 96682136 -47600353 + CT-rich Low_complexity Low_complexity 3 68 0 395 265 34 43 chr12 96683126 96683243 -47599246 - L2 LINE L2 -10 3303 3188 313 329 22 0 chr12 96683826 96683963 -47598526 - HAL1 LINE L1 -853 1654 1515 194 299 52 39 chr12 96684284 96684361 -47598128 - L2 LINE L2 -3 3310 3233 710 261 89 46 chr12 96684535 96684838 -47597651 + L2 LINE L2 888 1203 -2111 1120 238 94 8 chr12 96685097 96685479 -47597010 - Charlie4a DNA MER1_type -89 419 5 290 344 24 16 chr12 96685924 96686049 -47596440 + L2 LINE L2 3175 3300 -13 261 0 0 0 chr12 96686049 96686078 -47596411 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr12 96686260 96686289 -47596200 + AT_rich Low_complexity Low_complexity 1 29 0 309 374 24 0 chr12 96687071 96687203 -47595286 + MIR SINE MIR 6 145 -63 25 31 0 0 chr12 96687275 96687307 -47595182 + AT_rich Low_complexity Low_complexity 1 32 0 29 28 0 0 chr12 96688463 96688499 -47593990 + AT_rich Low_complexity Low_complexity 1 36 0 1101 265 80 44 chr12 96688517 96689014 -47593475 + L1ME3A LINE L1 5662 6170 0 1759 134 4 0 chr12 96689243 96689512 -47592977 - AluSx SINE Alu -11 301 32 1571 246 64 16 chr12 96689517 96690079 -47592410 + MER114 LTR ERV 52 640 -8 1660 142 14 17 chr12 96690764 96691087 -47591402 - AluSx SINE Alu 0 322 1 309 167 0 0 chr12 96692184 96692238 -47590251 - Ricksha DNA DNA -2342 904 851 2340 206 29 41 chr12 96692275 96692789 -47589700 - MLT2B3 LTR ERVL -46 508 1 2291 103 0 0 chr12 96693118 96693418 -47589071 - AluSg SINE Alu -7 303 4 33 43 0 0 chr12 96694068 96694115 -47588374 + AT_rich Low_complexity Low_complexity 1 47 0 1719 149 66 39 chr12 96694623 96694986 -47587503 - THE1C LTR MaLR -2 373 1 323 293 91 0 chr12 96694990 96695089 -47587400 + L2 LINE L2 3205 3312 -1 2024 95 3 61 chr12 96695247 96695610 -47586879 - AluY SINE Alu 0 344 1 710 239 46 8 chr12 96696731 96696970 -47585519 + LTR37B LTR ERV1 213 460 -8 3366 164 25 40 chr12 96697465 96697994 -47584495 - L1MC1 LINE L1 -8 6325 5808 2134 109 10 16 chr12 96697994 96698306 -47584183 - AluSq SINE Alu -2 311 2 3366 164 25 40 chr12 96698306 96698502 -47583987 - L1MC1 LINE L1 -525 5808 5611 25 31 0 0 chr12 96698621 96698653 -47583836 + AT_rich Low_complexity Low_complexity 1 32 0 516 162 20 0 chr12 96699278 96699377 -47583112 + L1MA5 LINE L1 6197 6297 -3 2216 244 79 47 chr12 96699540 96701264 -47581225 - L1ME1 LINE L1 -51 6115 4447 4627 97 57 0 chr12 96701264 96701915 -47580574 - LTR12 LTR ERV1 0 688 1 2216 244 79 47 chr12 96701915 96701996 -47580493 - L1ME1 LINE L1 -1719 4447 4370 2179 112 0 3 chr12 96701996 96702292 -47580197 - AluY SINE Alu -16 295 1 2216 244 79 47 chr12 96702292 96702424 -47580065 - L1ME1 LINE L1 -1796 4370 4074 1604 223 147 81 chr12 96702431 96703045 -47579444 - MLT1E1 LTR MaLR 0 654 1 1705 261 42 53 chr12 96703050 96703293 -47579196 - L1ME1 LINE L1 -2074 4072 3828 2053 87 66 0 chr12 96703293 96703580 -47578909 - AluY SINE Alu -5 306 1 1705 261 42 53 chr12 96703580 96704210 -47578279 - L1ME1 LINE L1 -2318 3828 3208 25 65 0 0 chr12 96705444 96705490 -47576999 + AT_rich Low_complexity Low_complexity 1 46 0 1907 137 3 3 chr12 96707396 96707688 -47574801 - AluSg SINE Alu -18 292 1 23 78 0 0 chr12 96708679 96708730 -47573759 + AT_rich Low_complexity Low_complexity 1 51 0 897 297 94 11 chr12 96709429 96709779 -47572710 + L2 LINE L2 2100 2478 -836 279 288 261 10 chr12 96709805 96710100 -47572389 + L1MC/D LINE L1 5277 5645 -2163 549 110 78 0 chr12 96710112 96710266 -47572223 + (TA)n Simple_repeat Simple_repeat 2 167 0 406 99 80 25 chr12 96710277 96710439 -47572050 + (TA)n Simple_repeat Simple_repeat 1 171 0 21562 113 10 35 chr12 96710541 96714601 -47567888 - L1P3 LINE L1 -2217 4244 327 350 212 44 22 chr12 96714616 96714676 -47567813 + (TA)n Simple_repeat Simple_repeat 2 59 -82 2649 99 0 0 chr12 96714676 96715031 -47567458 + THE1A LTR MaLR 1 355 0 350 212 44 22 chr12 96715031 96715107 -47567382 + (TA)n Simple_repeat Simple_repeat 59 141 0 873 249 55 24 chr12 96716006 96716408 -47566081 + MER31B LTR ERV1 1 466 0 234 0 0 0 chr12 96717342 96717368 -47565121 + (TA)n Simple_repeat Simple_repeat 1 26 0 270 351 48 18 chr12 96717931 96718096 -47564393 - L3b LINE CR1 -132 1451 1282 25 0 0 0 chr12 96719508 96719533 -47562956 + AT_rich Low_complexity Low_complexity 1 25 0 338 161 0 0 chr12 96719946 96720002 -47562487 + THE1C LTR MaLR 4 59 -316 1470 191 24 27 chr12 96720106 96720400 -47562089 + THE1C LTR MaLR 83 375 0 23 54 0 0 chr12 96723632 96723669 -47558820 + AT_rich Low_complexity Low_complexity 1 37 0 2137 172 41 36 chr12 96723879 96724425 -47558064 + MLT2A2 LTR ERVL 1 554 0 193 400 111 0 chr12 96724528 96724618 -47557871 - L2 LINE L2 -32 3240 3141 2345 62 14 0 chr12 96725267 96725559 -47556930 - AluY SINE Alu -15 296 1 622 296 111 5 chr12 96725693 96726064 -47556425 - L1M4 LINE L1 -1108 5038 4629 1324 213 126 3 chr12 96726071 96726381 -47556108 - MER7A DNA MER2_type 0 346 1 1428 226 38 7 chr12 96726381 96726824 -47555665 - L1M4 LINE L1 -1523 4623 4167 705 242 98 9 chr12 96726815 96727142 -47555347 - L1M4 LINE L1 -2849 3297 2942 * 459 281 69 13 chr12 96727174 96727477 -47555012 - L1M4 LINE L1 -3249 2897 2578 820 309 141 29 chr12 96727478 96728441 -47554048 + L2 LINE L2 2256 3311 -2 284 333 128 9 chr12 96728559 96728778 -47553711 - L3b LINE CR1 -157 1426 1182 906 196 40 10 chr12 96728829 96729028 -47553461 + MER3 DNA MER1_type 1 205 -4 383 276 75 5 chr12 96730790 96731004 -47551485 - L1MEc LINE L1 -2890 3239 3011 2687 72 18 16 chr12 96731216 96731602 -47550887 - L1PA7 LINE L1 -3 6151 5765 742 61 0 0 chr12 96731602 96731700 -47550789 + L1P LINE L1 5313 5410 -762 253 286 81 61 chr12 96731966 96732361 -47550128 - L1MEc LINE L1 -4729 1581 1179 413 269 58 95 chr12 96732386 96732456 -47550033 - L1MEc LINE L1 -5084 1035 964 1124 191 27 0 chr12 96732456 96732681 -47549808 + MER46A DNA MER2_type 2 232 -4 413 269 58 95 chr12 96732681 96733042 -47549447 - L1MEc LINE L1 -5155 964 620 655 297 5 0 chr12 96733095 96733280 -47549209 + L2 LINE L2 2489 2674 -640 261 273 68 62 chr12 96733320 96733496 -47548993 + L2 LINE L2 3020 3196 -117 1769 166 7 3 chr12 96733577 96733867 -47548622 - AluSx SINE Alu -15 297 7 295 293 70 70 chr12 96734668 96734941 -47547548 - L2 LINE L2 -58 3255 2983 477 311 79 39 chr12 96734958 96735238 -47547251 - L2 LINE L2 -498 2816 2526 24 32 0 0 chr12 96736847 96736878 -47545611 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr12 96737107 96737130 -47545359 + AT_rich Low_complexity Low_complexity 1 23 0 244 340 41 0 chr12 96737501 96737598 -47544891 + L2 LINE L2 3141 3241 -31 1678 171 52 35 chr12 96737700 96738069 -47544420 - THE1C LTR MaLR 0 375 1 8921 157 9 36 chr12 96738069 96739689 -47542800 - THE1C-int LTR MaLR 0 1580 4 1851 158 52 27 chr12 96739692 96740058 -47542431 - THE1C LTR MaLR 0 375 1 2313 117 11 40 chr12 96740435 96740661 -47541828 + THE1B LTR MaLR 1 213 -151 2805 13 0 0 chr12 96740661 96740967 -47541522 + AluYb8 SINE Alu 1 306 -12 2313 117 11 40 chr12 96740967 96741115 -47541374 + THE1B LTR MaLR 213 364 0 387 0 0 0 chr12 96741414 96741457 -47541032 + (CA)n Simple_repeat Simple_repeat 2 44 0 237 0 0 0 chr12 96741459 96741483 -47541006 - MER4E LTR ERV1 -95 684 661 2148 188 30 19 chr12 96741483 96741946 -47540543 + LTR27 LTR ERV1 2 469 -167 28 0 0 0 chr12 96742536 96742564 -47539925 + AT_rich Low_complexity Low_complexity 1 28 0 238 266 71 19 chr12 96742587 96742741 -47539748 + L1MEc LINE L1 1429 1590 -4806 821 278 115 27 chr12 96742784 96743835 -47538654 + L1MEc LINE L1 1703 2787 -3428 378 219 0 0 chr12 96743840 96743904 -47538585 + Tigger7 DNA MER2_type 1 64 -275 230 229 30 30 chr12 96744222 96744353 -47538136 + (TA)n Simple_repeat Simple_repeat 2 132 0 2186 121 3 0 chr12 96747235 96747540 -47534949 + AluSx SINE Alu 1 306 -6 239 323 89 0 chr12 96748031 96748155 -47534334 - MIR SINE MIR -121 141 7 582 294 67 59 chr12 96748321 96749071 -47533418 - L2 LINE L2 -16 3297 2493 3789 76 179 40 chr12 96749071 96749675 -47532814 + LTR12 LTR ERV1 1 688 0 582 294 67 59 chr12 96749675 96749723 -47532766 - L2 LINE L2 -820 2493 2447 1708 150 3 64 chr12 96749830 96750144 -47532345 + AluSx SINE Alu 1 295 -17 679 196 137 64 chr12 96750144 96750363 -47532126 - L1MC2 LINE L1 -57 6287 6053 312 333 10 56 chr12 96750774 96750969 -47531520 - MER5A DNA MER1_type 0 189 4 199 323 174 12 chr12 96751357 96751524 -47530965 - L3 LINE CR1 -356 1221 1028 242 295 42 32 chr12 96751626 96751721 -47530768 - MIR SINE MIR -87 175 80 2572 244 73 14 chr12 96752123 96753738 -47528751 - L1ME1 LINE L1 -76 6090 4383 218 308 115 13 chr12 96754099 96754177 -47528312 - MER5B DNA MER1_type -89 89 4 25 0 0 0 chr12 96755011 96755036 -47527453 + AT_rich Low_complexity Low_complexity 1 25 0 416 238 0 0 chr12 96755830 96755910 -47526579 - Tigger5 DNA MER2_type -2 2321 2242 363 238 0 12 chr12 96755976 96756056 -47526433 - Tigger5 DNA MER2_type -2244 79 1 2264 104 0 0 chr12 96757072 96757371 -47525118 + AluSg SINE Alu 1 299 -11 213 290 130 0 chr12 96757462 96757531 -47524958 + L2 LINE L2 3158 3235 -37 1355 193 3 38 chr12 96758091 96758381 -47524108 - AluJb SINE Alu -2 310 31 780 197 33 64 chr12 96758381 96758711 -47523778 + pTR5 LTR ERV1 743 1062 -1376 3947 153 69 59 chr12 96758722 96759784 -47522705 + pTR5 LTR ERV1 116 2603 -3 245 303 97 43 chr12 96759972 96760157 -47522332 + MIR3 SINE MIR 12 206 -2 240 122 0 0 chr12 96760499 96760540 -47521949 + (TG)n Simple_repeat Simple_repeat 2 42 0 443 273 68 19 chr12 96763200 96763361 -47519128 - MIR SINE MIR -54 208 40 691 274 57 14 chr12 96763736 96763948 -47518541 + MIR SINE MIR 21 241 -21 191 59 0 29 chr12 96763975 96764009 -47518480 + (TG)n Simple_repeat Simple_repeat 2 34 0 250 348 131 2 chr12 96764279 96764432 -47518057 - MIR SINE MIR -62 146 27 251 263 18 0 chr12 96764645 96764702 -47517787 + MLT1J LTR MaLR 111 168 -343 742 169 8 0 chr12 96764964 96765094 -47517395 - AluJb SINE Alu -181 131 1 854 57 0 0 chr12 96765409 96765514 -47516975 + AluY SINE Alu 1 105 -206 24 0 0 0 chr12 96765514 96765538 -47516951 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr12 96765625 96765666 -47516823 + AT_rich Low_complexity Low_complexity 1 41 0 185 287 125 44 chr12 96765701 96765837 -47516652 - L2 LINE L2 -1516 1798 1652 239 275 0 38 chr12 96765854 96765934 -47516555 + HsTC2 DNA Tc2 2 78 -1820 2908 192 42 59 chr12 96766263 96766993 -47515496 + L1MB3 LINE L1 5466 6183 0 240 263 0 0 chr12 96767004 96767061 -47515428 + HsTC2 DNA Tc2 1840 1896 -2 725 344 143 44 chr12 96767096 96768423 -47514066 - L2 LINE L2 -1736 1578 120 618 141 0 10 chr12 96769774 96769873 -47512616 + MER4A LTR ERV1 1 98 -566 1746 114 165 76 chr12 96769873 96770242 -47512247 + MER4A LTR ERV1 263 664 0 23 78 0 0 chr12 96770310 96770361 -47512128 + AT_rich Low_complexity Low_complexity 1 51 0 491 267 70 37 chr12 96771116 96771303 -47511186 - MIR SINE MIR -50 212 20 828 250 82 77 chr12 96771854 96772242 -47510247 - MLT1H1 LTR MaLR -9 546 157 317 294 84 14 chr12 96772277 96772420 -47510069 + L2 LINE L2 3160 3312 -1 1799 159 13 13 chr12 96772436 96772569 -47509920 + AluSx SINE Alu 1 133 -179 2355 77 0 3 chr12 96772569 96772879 -47509610 + AluY SINE Alu 1 309 -2 1799 159 13 13 chr12 96772879 96773046 -47509443 + AluSx SINE Alu 132 301 -11 306 125 0 0 chr12 96773208 96773256 -47509233 + (T)n Simple_repeat Simple_repeat 1 48 0 391 291 26 26 chr12 96773260 96773377 -47509112 - MIR SINE MIR -68 194 78 1388 249 104 53 chr12 96773869 96774918 -47507571 + L1MD1 LINE L1 370 1449 -4631 898 228 10 5 chr12 96774925 96775127 -47507362 - MLT1B LTR MaLR 0 390 188 467 202 186 15 chr12 96775161 96775318 -47507171 - MLT1B LTR MaLR -183 191 25 889 298 36 38 chr12 96775370 96775820 -47506669 + L1MD1 LINE L1 1491 1939 -4322 243 192 0 0 chr12 96776141 96776193 -47506296 - L2 LINE L2 -1 3312 3261 2580 40 0 0 chr12 96776458 96776762 -47505727 + AluY SINE Alu 1 304 -7 755 300 40 85 chr12 96776924 96777618 -47504871 - L2 LINE L2 -20 3293 2565 27 0 0 26 chr12 96778172 96778183 -47504306 + AT_rich Low_complexity Low_complexity 1 11 -26 358 123 0 0 chr12 96778183 96778240 -47504249 + L1PA8 LINE L1 6111 6167 -5 27 0 0 26 chr12 96778240 96778266 -47504223 + AT_rich Low_complexity Low_complexity 11 37 0 863 222 38 0 chr12 96779551 96779790 -47502699 + L1MD1 LINE L1 2621 2868 -3212 * 901 228 43 18 chr12 96779786 96780067 -47502422 + L1MD1 LINE L1 4919 5206 -874 2966 200 46 7 chr12 96780112 96780808 -47501681 + L1MD1 LINE L1 5192 5914 -262 21 57 0 0 chr12 96780811 96780846 -47501643 + AT_rich Low_complexity Low_complexity 1 35 0 287 104 0 0 chr12 96780853 96780901 -47501588 + MER93a LTR ERV1 351 398 -4 334 290 73 65 chr12 96780909 96781154 -47501335 + MER93a-int LTR ERV1 3 249 -7288 189 0 0 0 chr12 96781222 96781243 -47501246 + (A)n Simple_repeat Simple_repeat 1 21 0 1380 214 47 0 chr12 96781627 96781782 -47500707 - AluJb SINE Alu -23 289 114 219 88 0 0 chr12 96781782 96781816 -47500673 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1380 214 47 0 chr12 96781816 96781936 -47500553 - AluJb SINE Alu -198 114 1 286 214 14 14 chr12 96781965 96782035 -47500454 + MER93a-int LTR ERV1 1234 1303 -3568 1254 143 104 13 chr12 96782321 96782551 -47499938 - MSTA LTR MaLR 0 428 178 2506 55 3 6 chr12 96782589 96782901 -47499588 - AluY SINE Alu 0 311 1 278 140 185 51 chr12 96783021 96783188 -47499301 + MER93a-int LTR ERV1 1570 2157 -2779 180 0 0 0 chr12 96783311 96783331 -47499158 + (TA)n Simple_repeat Simple_repeat 2 21 0 946 200 0 0 chr12 96783331 96783506 -47498983 + AluSg/x SINE Alu 137 311 -1 1507 221 100 66 chr12 96783510 96784098 -47498391 + MER93b-int LTR ERV1 5421 6028 -303 486 242 81 21 chr12 96784446 96784740 -47497749 + MER93b LTR ERV1 3 346 -27 1315 180 31 0 chr12 96784751 96785007 -47497482 + L1MD1 LINE L1 5913 6176 0 2150 108 0 0 chr12 96785187 96785475 -47497014 - AluSc SINE Alu -21 288 1 587 135 10 0 chr12 96786338 96786442 -47496047 + L1MA7 LINE L1 6187 6291 0 180 404 31 19 chr12 96786738 96786899 -47495590 + MIR SINE MIR 92 254 -8 232 298 24 36 chr12 96787100 96787184 -47495305 + MIR SINE MIR 180 262 0 198 417 42 7 chr12 96787417 96787561 -47494928 - L2 LINE L2 -21 3251 3103 22 0 0 0 chr12 96787594 96787616 -47494873 + AT_rich Low_complexity Low_complexity 1 22 0 516 32 0 0 chr12 96787820 96787882 -47494607 + (TA)n Simple_repeat Simple_repeat 1 62 0 1467 180 28 75 chr12 96789590 96789954 -47492535 - AluJo SINE Alu 0 354 6 185 0 0 39 chr12 96789973 96789999 -47492490 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 567 0 0 0 chr12 96790220 96790283 -47492206 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 223 286 0 16 chr12 96790287 96790350 -47492139 + A-rich Low_complexity Low_complexity 1 62 0 535 156 18 94 chr12 96840956 96841180 -47441309 + AluSq SINE Alu 101 307 -6 256 158 88 0 chr12 96841242 96841299 -47441190 + L1MB7 LINE L1 6058 6119 -65 622 277 173 24 chr12 96841343 96841719 -47440770 + L1MC4 LINE L1 5474 5905 -1903 390 346 178 27 chr12 96843041 96843445 -47439044 - L2 LINE L2 -36 3277 2813 3065 185 68 12 chr12 96843452 96844170 -47438319 - L1MB7 LINE L1 0 6184 5427 498 227 31 0 chr12 96844167 96844295 -47438194 - L1MB7 LINE L1 -1793 4353 4222 * 6777 231 41 23 chr12 96844293 96846278 -47436211 - L1M4 LINE L1 -1564 4582 2554 1737 175 10 13 chr12 96846278 96846587 -47435902 + AluJo SINE Alu 1 308 -4 6777 231 41 23 chr12 96846587 96846752 -47435737 - L1M4 LINE L1 -3592 2554 2393 254 320 107 40 chr12 96846825 96846975 -47435514 - MIR SINE MIR 0 262 103 234 205 39 51 chr12 96847551 96847629 -47434860 + L1MC4 LINE L1 6627 6703 -1339 1039 240 26 38 chr12 96849109 96849422 -47433067 + L1MDa LINE L1 268 576 -5964 1912 133 0 11 chr12 96849975 96850299 -47432190 + AluJb SINE Alu 1 321 0 23 0 0 0 chr12 96851770 96851793 -47430696 + AT_rich Low_complexity Low_complexity 1 23 0 444 342 81 40 chr12 96851962 96852284 -47430205 - L2 LINE L2 0 3272 2938 342 45 0 0 chr12 96852617 96852661 -47429828 + (CA)n Simple_repeat Simple_repeat 2 45 0 376 347 105 48 chr12 96852691 96853490 -47428999 - L2 LINE L2 -1197 2117 1273 440 294 9 0 chr12 96853504 96853613 -47428876 - MER81 DNA DNA -4 110 1 22 35 0 0 chr12 96854006 96854035 -47428454 + AT_rich Low_complexity Low_complexity 1 29 0 336 331 62 6 chr12 96854513 96854673 -47427816 + MIR SINE MIR 70 238 -24 905 141 94 0 chr12 96854721 96854891 -47427598 + L1MB1 LINE L1 5945 6130 -38 669 265 112 28 chr12 96854928 96855143 -47427346 - MIR SINE MIR -4 258 26 2177 118 41 39 chr12 96855271 96855634 -47426855 + THE1B LTR MaLR 1 364 0 398 329 75 5 chr12 96856081 96856294 -47426195 + MIR SINE MIR 35 262 0 22 0 0 0 chr12 96857597 96857619 -47424870 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 96860429 96860451 -47422038 + AT_rich Low_complexity Low_complexity 1 22 0 207 341 85 16 chr12 96860684 96860813 -47421676 + L2 LINE L2 2494 2631 -683 799 185 28 110 chr12 96860867 96861121 -47421368 - L1MB8 LINE L1 -6 6172 5940 3328 169 23 2 chr12 96861170 96861775 -47420714 - L1MA6 LINE L1 -236 6064 5447 6230 136 12 9 chr12 96861888 96862869 -47419620 + HERV9 LTR ERV1 54 1037 -7362 * 16017 101 21 8 chr12 96862837 96865106 -47417383 + HERV9 LTR ERV1 1164 3461 -4938 451 245 48 63 chr12 96865123 96865434 -47417055 + MLT1H LTR MaLR 200 549 0 1547 144 61 1 chr12 96865678 96866093 -47416396 + LTR19A LTR ERV1 1 472 -14 304 291 68 29 chr12 96866332 96866435 -47416054 + MER91C DNA MER1_type 33 139 -1 301 303 55 9 chr12 96867609 96867718 -47414771 + MIR SINE MIR 35 148 -114 27 49 0 0 chr12 96868161 96868202 -47414287 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr12 96869599 96869621 -47412868 + AT_rich Low_complexity Low_complexity 1 22 0 1227 199 59 31 chr12 96870506 96870792 -47411697 - AluJb SINE Alu -7 295 2 22 0 0 0 chr12 96870797 96870819 -47411670 + AT_rich Low_complexity Low_complexity 1 22 0 2175 102 33 97 chr12 96871630 96872052 -47410437 + MER48 LTR ERV1 4 398 0 403 240 109 109 chr12 96873368 96873551 -47408938 - MIR SINE MIR -13 249 67 235 219 109 47 chr12 96873599 96873663 -47408826 - MER5A DNA MER1_type -118 71 4 23 33 0 0 chr12 96874896 96874926 -47407563 + AT_rich Low_complexity Low_complexity 1 30 0 205 308 27 75 chr12 96875328 96875474 -47407015 + L2 LINE L2 2842 2980 -292 283 331 124 0 chr12 96875555 96875676 -47406813 + L2 LINE L2 3134 3269 -3 342 233 0 0 chr12 96877736 96877869 -47404620 + CT-rich Low_complexity Low_complexity 2 134 0 220 250 0 0 chr12 96877892 96877948 -47404541 + CT-rich Low_complexity Low_complexity 1 56 0 205 152 0 0 chr12 96878697 96878730 -47403759 + (CCG)n Simple_repeat Simple_repeat 2 34 0 369 316 86 16 chr12 96879706 96879893 -47402596 - MIR SINE MIR -57 205 6 498 164 26 125 chr12 96880229 96880381 -47402108 + MER6 DNA MER2_type 8 865 0 1244 166 58 0 chr12 96881468 96881727 -47400762 - L1MA6 LINE L1 -5 6295 6022 1038 286 22 22 chr12 96881830 96881973 -47400516 - MLT1E LTR MaLR 0 593 451 2462 113 5 24 chr12 96881973 96882344 -47400145 + THE1B LTR MaLR 1 364 0 1038 286 22 22 chr12 96882344 96882518 -47399971 - MLT1E LTR MaLR -141 452 276 447 184 54 101 chr12 96882744 96882912 -47399577 - MLT1E LTR MaLR -433 160 1 442 262 91 32 chr12 96884039 96884260 -47398229 + ORSL DNA AcHobo 42 275 0 362 259 165 13 chr12 96884562 96884720 -47397769 + MIR SINE MIR 80 261 -1 246 253 13 27 chr12 96885454 96885529 -47396960 + MLT1E3 LTR MaLR 1 74 -550 1627 133 0 4 chr12 96885552 96885785 -47396704 + AluSc SINE Alu 6 237 -72 485 325 75 24 chr12 96886022 96886234 -47396255 - MLT1J2 LTR MaLR -25 425 203 577 260 8 8 chr12 96889033 96889160 -47393329 - MER5B DNA MER1_type -51 127 1 1878 170 49 18 chr12 96889354 96889683 -47392806 - MER1B DNA MER1_type 0 339 1 731 205 99 0 chr12 96890074 96890235 -47392254 - MER5A DNA MER1_type -6 183 7 22 80 0 0 chr12 96891045 96891095 -47391394 + AT_rich Low_complexity Low_complexity 1 50 0 655 273 162 5 chr12 96891648 96891864 -47390625 - MIR SINE MIR -12 250 1 27 0 0 0 chr12 96892982 96893009 -47389480 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr12 96893687 96893716 -47388773 + AT_rich Low_complexity Low_complexity 1 29 0 401 192 0 0 chr12 96893716 96893789 -47388700 - L1PA16 LINE L1 -14 6152 6080 705 254 22 22 chr12 96895350 96895535 -47386954 + MIR SINE MIR 74 258 -4 1150 256 142 39 chr12 96896035 96896597 -47385892 - MLT1E3 LTR MaLR 0 624 5 202 296 12 37 chr12 96898414 96898495 -47383994 + GA-rich Low_complexity Low_complexity 3 81 0 2048 125 0 13 chr12 96899237 96899542 -47382947 + AluSc SINE Alu 1 301 -8 22 56 0 0 chr12 96899911 96899947 -47382542 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr12 96900134 96900171 -47382318 + AT_rich Low_complexity Low_complexity 1 37 0 201 154 0 0 chr12 96900268 96900307 -47382182 + (ATG)n Simple_repeat Simple_repeat 3 41 0 203 123 62 0 chr12 96900321 96900356 -47382133 - MIR SINE MIR -119 143 106 23 0 0 0 chr12 96900428 96900451 -47382038 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 96900857 96900878 -47381611 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 96901797 96901819 -47380670 + AT_rich Low_complexity Low_complexity 1 22 0 192 333 147 34 chr12 96904303 96904480 -47378009 - L3 LINE CR1 -347 1230 1034 967 360 165 13 chr12 96905130 96906317 -47376172 + L2 LINE L2 312 1679 -1635 292 329 20 40 chr12 96906552 96906701 -47375788 + L2 LINE L2 1714 1859 -1455 368 333 19 12 chr12 96906761 96906923 -47375566 + L2 LINE L2 2040 2202 -1112 502 270 101 7 chr12 96906978 96907126 -47375363 - MIR SINE MIR -93 169 8 310 299 175 69 chr12 96907152 96907570 -47374919 + L2 LINE L2 2234 2695 -619 24 0 0 0 chr12 96907622 96907646 -47374843 + AT_rich Low_complexity Low_complexity 1 24 0 6318 70 12 0 chr12 96907652 96908475 -47374014 - L1PA7 LINE L1 -5 6149 5317 455 337 145 18 chr12 96908478 96908999 -47373490 + L2 LINE L2 2726 3313 0 291 226 39 29 chr12 96909324 96909426 -47373063 - MLT1K LTR MaLR 0 588 486 569 251 232 34 chr12 96909676 96909939 -47372550 + L2 LINE L2 2998 3312 -1 5151 217 34 25 chr12 96910450 96911834 -47370655 - L1PA15 LINE L1 -1729 4417 3022 4677 156 24 15 chr12 96911835 96913542 -47368947 + L1PA15 LINE L1 4435 6152 -13 22 0 0 0 chr12 96913848 96913870 -47368619 + AT_rich Low_complexity Low_complexity 1 22 0 211 194 30 45 chr12 96914033 96914100 -47368389 - MIR SINE MIR -56 206 141 199 389 44 0 chr12 96914089 96914179 -47368310 - MIR3 SINE MIR -105 103 10 * 701 288 51 28 chr12 96914250 96914643 -47367846 - HAL1b LINE L1 -629 719 318 4058 217 91 14 chr12 96914958 96916639 -47365850 + L1MCb LINE L1 407 2263 -4301 2946 196 18 8 chr12 96916635 96917252 -47365237 + L1MC2 LINE L1 5696 6318 -26 * 202 250 15 103 chr12 96917294 96917362 -47365127 - L2 LINE L2 0 3272 3211 207 0 0 0 chr12 96919425 96919448 -47363041 + (TG)n Simple_repeat Simple_repeat 2 24 0 260 304 0 0 chr12 96919510 96919589 -47362900 + L1ME4a LINE L1 5950 6028 -93 25 0 0 0 chr12 96919806 96919831 -47362658 + AT_rich Low_complexity Low_complexity 1 25 0 1725 177 0 0 chr12 96919854 96920136 -47362353 - AluJb SINE Alu -30 282 1 708 169 47 35 chr12 96920223 96920395 -47362094 + MER53 DNA DNA 4 177 -12 2429 190 18 18 chr12 96920988 96921445 -47361044 - MLT2C2 LTR ERVL -7 457 1 22 35 0 0 chr12 96922359 96922388 -47360101 + AT_rich Low_complexity Low_complexity 1 29 0 190 339 179 13 chr12 96922512 96922736 -47359753 - L2 LINE L2 -10 3303 3043 297 277 25 82 chr12 96923390 96923708 -47358781 + L1MCb LINE L1 2372 2671 -4074 376 206 31 100 chr12 96923709 96923809 -47358680 + L1ME2 LINE L1 5798 5885 -279 2095 187 41 12 chr12 96923809 96924221 -47358268 - MSTB LTR MaLR -2 424 1 376 206 31 100 chr12 96924221 96924280 -47358209 + L1ME2 LINE L1 5885 5946 -218 1044 187 64 107 chr12 96924283 96924609 -47357880 - MLT1A1 LTR MaLR -2 363 52 * 1687 173 79 20 chr12 96924597 96924763 -47357726 - MER46B DNA MER2_type -2495 236 163 2158 172 53 5 chr12 96924763 96925175 -47357314 + MSTB1 LTR MaLR 1 432 0 1687 173 79 20 chr12 96925175 96925349 -47357140 - MER46B DNA MER2_type -2568 163 1 260 217 83 0 chr12 96925350 96925410 -47357079 - MLT1A1 LTR MaLR -300 65 1 554 305 15 25 chr12 96925411 96925614 -47356875 + L1ME2 LINE L1 5945 6145 -19 353 345 23 17 chr12 96926234 96926411 -47356078 - MLT1H LTR MaLR -287 262 85 940 300 96 10 chr12 96926470 96927169 -47355320 + L1MCb LINE L1 3038 3796 -2768 23 33 0 0 chr12 96927223 96927253 -47355236 + AT_rich Low_complexity Low_complexity 1 30 0 588 256 24 30 chr12 96927268 96927436 -47355053 - MIR SINE MIR 0 262 96 222 264 29 43 chr12 96927457 96927597 -47354892 + (CAAAG)n Simple_repeat Simple_repeat 1 138 0 302 341 45 45 chr12 96928077 96928253 -47354236 - L2 LINE L2 -1381 1933 1758 243 333 35 14 chr12 96930547 96930688 -47351801 + MLT1K LTR MaLR 423 566 -22 690 309 63 58 chr12 96931631 96932394 -47350095 + L1ME LINE L1 322 1088 -4982 1534 199 29 61 chr12 96932450 96932635 -47349854 - MLT1B LTR MaLR -26 364 196 185 0 40 0 chr12 96932635 96932660 -47349829 + (GA)n Simple_repeat Simple_repeat 1 26 0 1534 199 29 61 chr12 96932660 96932850 -47349639 - MLT1B LTR MaLR -194 196 1 534 280 62 50 chr12 96932850 96932945 -47349544 + L1ME LINE L1 1160 1252 -5009 204 40 0 0 chr12 96932945 96932970 -47349519 + (CA)n Simple_repeat Simple_repeat 2 26 0 534 280 62 50 chr12 96932970 96933213 -47349276 + L1ME LINE L1 1252 1502 -4759 * 1848 191 69 7 chr12 96933207 96933615 -47348874 + L1MA3 LINE L1 5873 6305 0 257 285 125 42 chr12 96933622 96933934 -47348555 + L1ME LINE L1 1493 1830 -4431 210 344 63 48 chr12 96935279 96935468 -47347021 - MIR3 SINE MIR -1 207 16 278 369 77 5 chr12 96935659 96935854 -47346635 + LTR16C LTR ERVL 256 464 -27 2216 71 3 10 chr12 96936904 96937199 -47345290 - AluY SINE Alu -18 293 1 226 211 0 0 chr12 96937543 96937581 -47344908 + (TG)n Simple_repeat Simple_repeat 1 38 0 818 244 19 94 chr12 96938488 96938796 -47343693 - MLT1A1 LTR MaLR 0 365 81 751 222 19 61 chr12 96938873 96939085 -47343404 + MLT1B LTR MaLR 188 390 0 189 211 158 35 chr12 96939328 96939385 -47343104 + L3 LINE CR1 433 496 -1081 346 289 97 18 chr12 96940384 96940612 -47341877 + HAL1 LINE L1 2258 2503 -4 458 290 40 108 chr12 96940706 96941103 -47341386 - MLT1I LTR MaLR 0 409 40 201 167 0 0 chr12 96941460 96941496 -47340993 + (TAA)n Simple_repeat Simple_repeat 2 37 0 527 272 0 0 chr12 96942614 96942728 -47339761 + MIR SINE MIR 3 116 -146 195 327 115 27 chr12 96942822 96943152 -47339337 + L2 LINE L2 726 1084 -2230 683 318 42 4 chr12 96943301 96943540 -47338949 - MIR SINE MIR -6 256 9 228 182 0 0 chr12 96943917 96943961 -47338528 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 297 279 29 0 chr12 96944113 96944181 -47338308 + MER21B LTR ERV1 19 88 -775 3062 227 84 17 chr12 96944184 96944938 -47337551 + MER21B LTR ERV1 42 845 -18 262 367 115 36 chr12 96945705 96946097 -47336392 + L2 LINE L2 2272 2694 -620 964 265 35 15 chr12 96946120 96946381 -47336108 - MIR SINE MIR 0 262 4 519 371 65 18 chr12 96946759 96947142 -47335347 - L3 LINE CR1 -15 1562 1162 323 242 54 47 chr12 96947353 96947502 -47334987 - MER103 DNA DNA -10 156 7 207 0 0 0 chr12 96949268 96949291 -47333198 + (TGGA)n Simple_repeat Simple_repeat 3 25 0 201 325 57 67 chr12 96949937 96950131 -47332358 - MIR SINE MIR -56 206 15 188 341 103 0 chr12 96950716 96950842 -47331647 + MIR SINE MIR 51 189 -73 610 232 125 36 chr12 96950842 96951010 -47331479 + MER5A DNA MER1_type 2 184 -5 552 230 86 24 chr12 96952104 96952254 -47330235 + MER5A DNA MER1_type 2 148 -30 300 53 0 0 chr12 96954293 96954331 -47328158 + (TC)n Simple_repeat Simple_repeat 1 38 0 192 77 0 0 chr12 96954354 96954380 -47328109 + (TA)n Simple_repeat Simple_repeat 1 26 0 240 141 28 14 chr12 96954656 96954727 -47327762 + (TA)n Simple_repeat Simple_repeat 2 73 0 529 327 97 58 chr12 96956789 96957462 -47325027 + L2 LINE L2 1785 2483 -831 226 271 0 0 chr12 96957890 96957938 -47324551 + L2 LINE L2 3225 3272 0 211 388 0 0 chr12 96958054 96958134 -47324355 + MIR SINE MIR 49 128 -134 227 269 64 0 chr12 96958235 96958313 -47324176 - MIR3 SINE MIR -15 193 111 24 0 0 0 chr12 96958772 96958796 -47323693 + AT_rich Low_complexity Low_complexity 1 24 0 367 275 84 39 chr12 96958890 96959068 -47323421 - HAL1 LINE L1 -29 2478 2293 322 221 64 50 chr12 96959108 96959248 -47323241 - HAL1 LINE L1 -313 2194 2053 731 234 9 72 chr12 96959360 96959582 -47322907 + MIR SINE MIR 11 218 -44 796 279 140 74 chr12 96960067 96961151 -47321338 - HAL1 LINE L1 -701 1806 651 318 269 11 11 chr12 96961159 96961252 -47321237 + (CATA)n Simple_repeat Simple_repeat 3 95 0 1104 345 41 16 chr12 96962769 96963329 -47319160 - ERVL LTR ERVL -3044 2720 2147 280 354 60 43 chr12 96963557 96963859 -47318630 - ERVL LTR ERVL -3947 1817 1511 1481 239 31 8 chr12 96963915 96964270 -47318219 + MLT1A1 LTR MaLR 3 365 0 1135 201 114 22 chr12 96965545 96965878 -47316611 - MSTA LTR MaLR 0 375 1 21 0 0 0 chr12 96966434 96966455 -47316034 + AT_rich Low_complexity Low_complexity 1 21 0 38 0 0 0 chr12 96967028 96967066 -47315423 + AT_rich Low_complexity Low_complexity 1 38 0 381 274 137 8 chr12 96967481 96967605 -47314884 + MIR SINE MIR 79 218 -44 25 0 0 0 chr12 96967972 96967997 -47314492 + AT_rich Low_complexity Low_complexity 1 25 0 2227 101 0 10 chr12 96969125 96969431 -47313058 - AluSx SINE Alu -9 303 1 2377 48 0 35 chr12 96969601 96969911 -47312578 + AluY SINE Alu 2 300 -11 452 305 26 19 chr12 96971435 96971589 -47310900 - MER5A DNA MER1_type -26 163 9 228 184 0 0 chr12 96972485 96972534 -47309955 + GA-rich Low_complexity Low_complexity 5 53 0 22 35 0 0 chr12 96972992 96973021 -47309468 + AT_rich Low_complexity Low_complexity 1 29 0 222 62 0 0 chr12 96973241 96973273 -47309216 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 427 150 6 66 chr12 96973886 96974053 -47308436 + GA-rich Low_complexity Low_complexity 4 160 0 465 303 40 29 chr12 96974131 96974306 -47308183 - L2 LINE L2 -8 3305 3129 310 335 138 18 chr12 96975195 96975362 -47307127 - MIR3 SINE MIR -7 201 15 412 320 67 0 chr12 96975469 96975619 -47306870 + MIR SINE MIR 48 207 -55 300 186 0 0 chr12 96975777 96975836 -47306653 + GA-rich Low_complexity Low_complexity 3 61 0 195 69 0 0 chr12 96976533 96976562 -47305927 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 359 75 0 181 chr12 96976631 96976725 -47305764 + L1PB2 LINE L1 5956 6032 -119 21 0 0 0 chr12 96977224 96977245 -47305244 + AT_rich Low_complexity Low_complexity 1 21 0 494 125 38 0 chr12 96978100 96978180 -47304309 - MLT1C LTR MaLR -384 83 1 609 283 17 39 chr12 96978181 96978261 -47304228 - L2 LINE L2 -655 2659 2579 1647 157 142 9 chr12 96978261 96978592 -47303897 - THE1C LTR MaLR 0 375 1 609 283 17 39 chr12 96978592 96978744 -47303745 - L2 LINE L2 -735 2579 2432 467 281 22 7 chr12 96978750 96978885 -47303604 + MIR SINE MIR 68 204 -58 22 56 0 0 chr12 96978941 96978977 -47303512 + AT_rich Low_complexity Low_complexity 1 36 0 1179 237 37 60 chr12 96979147 96979586 -47302903 - MER39 LTR ERV1 -1 683 274 396 302 77 4 chr12 96979689 96979898 -47302591 - L1ME2 LINE L1 -224 5929 5701 263 288 38 0 chr12 96979972 96980052 -47302437 + MER5A DNA MER1_type 9 91 -98 192 307 27 13 chr12 96979994 96980069 -47302420 - MER5A DNA MER1_type -22 167 92 * 189 367 0 0 chr12 96980053 96980113 -47302376 + MER5A DNA MER1_type 130 189 0 * 409 340 43 40 chr12 96980113 96980483 -47302006 - L1ME2 LINE L1 -524 5623 5253 355 301 79 57 chr12 96980506 96981065 -47301424 - L1ME2 LINE L1 -942 5187 4617 227 360 140 0 chr12 96981139 96981303 -47301186 - LTR50 LTR ERVL -607 188 2 1883 82 0 0 chr12 96981386 96981681 -47300808 - L1PA5 LINE L1 0 6154 5898 493 214 39 0 chr12 96981902 96982005 -47300484 + Tigger3(Golem) DNA MER2_type 2929 3035 0 491 291 91 45 chr12 96982163 96982891 -47299598 - L1ME2 LINE L1 -3128 3001 2241 6182 110 27 9 chr12 96983030 96984024 -47298465 - L1PA11 LINE L1 -1 7611 6613 2220 101 0 3 chr12 96984025 96984321 -47298168 - AluSg SINE Alu -2 308 14 20045 199 29 25 chr12 96984330 96985142 -47297347 - L1PA11 LINE L1 -1173 6411 5604 1764 163 62 14 chr12 96985142 96985498 -47296991 - THE1C LTR MaLR -2 373 1 20045 199 29 25 chr12 96985498 96985972 -47296517 - L1PA11 LINE L1 -1980 5604 5133 336 24 0 0 chr12 96985972 96986013 -47296476 + (TTG)n Simple_repeat Simple_repeat 3 43 0 20045 199 29 25 chr12 96986013 96990030 -47292459 - L1PA11 LINE L1 -2451 5133 7 273 272 19 19 chr12 96990526 96990629 -47291860 - L1ME2 LINE L1 -4662 1467 1365 410 318 92 42 chr12 96990643 96990904 -47291585 - L1ME2 LINE L1 -4886 1233 960 1122 216 0 0 chr12 96990915 96991137 -47291352 - L1 LINE L1 -1921 4225 4004 1239 199 29 0 chr12 96991138 96991414 -47291075 + L1P LINE L1 3713 3996 -2150 682 323 142 40 chr12 96991662 96992395 -47290094 - L2 LINE L2 -5 3308 2501 1317 233 82 34 chr12 96992395 96992773 -47289716 + MSTD LTR MaLR 1 396 0 682 323 142 40 chr12 96992773 96992789 -47289700 - L2 LINE L2 -812 2501 2488 2581 187 22 15 chr12 96992875 96993271 -47289218 + L1MA8 LINE L1 4017 4421 -1725 1990 128 0 7 chr12 96993271 96993590 -47288899 + AluSc SINE Alu 3 319 0 2581 187 22 15 chr12 96993590 96993737 -47288752 + L1MA8 LINE L1 4421 4565 -1581 298 158 18 18 chr12 96993737 96993794 -47288695 - MSTD LTR MaLR 0 457 401 64 62 0 0 chr12 96993795 96993908 -47288581 + AT_rich Low_complexity Low_complexity 1 113 0 1363 219 95 20 chr12 96993918 96994224 -47288265 - MSTD LTR MaLR -67 329 1 5183 179 40 10 chr12 96994224 96995404 -47287085 + L1MA8 LINE L1 4561 5805 -486 1912 170 28 6 chr12 96995404 96995762 -47286727 + MER47A DNA MER2_type 1 366 0 5183 179 40 10 chr12 96995762 96996252 -47286237 + L1MA8 LINE L1 5805 6279 -12 548 293 89 26 chr12 96996801 96997071 -47285418 + L2 LINE L2 3027 3313 0 274 305 53 70 chr12 96997173 96997483 -47285006 - L2 LINE L2 -194 3078 2776 264 402 0 16 chr12 96997485 96997612 -47284877 - L2 LINE L2 -502 2812 2688 341 22 22 0 chr12 96999078 96999124 -47283365 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 24 32 0 0 chr12 97001713 97001744 -47280745 + AT_rich Low_complexity Low_complexity 1 31 0 236 309 48 0 chr12 97002040 97002124 -47280365 + MIR3 SINE MIR 119 206 -2 267 264 245 19 chr12 97002562 97002721 -47279768 + MIR SINE MIR 53 247 -15 189 0 0 0 chr12 97004024 97004045 -47278444 + (A)n Simple_repeat Simple_repeat 1 21 0 1564 147 109 4 chr12 97004223 97004674 -47277815 + AluSx SINE Alu 1 479 0 207 259 0 0 chr12 97004674 97004732 -47277757 + GA-rich Low_complexity Low_complexity 1 58 0 2078 120 3 0 chr12 97005053 97005344 -47277145 - AluSg SINE Alu -16 294 3 24 0 0 0 chr12 97006351 97006375 -47276114 + AT_rich Low_complexity Low_complexity 1 24 0 247 333 59 32 chr12 97010490 97010676 -47271813 - MIR SINE MIR -6 256 66 332 48 0 0 chr12 97011031 97011073 -47271416 - L1PA8 LINE L1 -183 5948 5907 1241 139 0 0 chr12 97011073 97011278 -47271211 + L1PA8 LINE L1 5964 6172 0 335 304 14 0 chr12 97011541 97011679 -47270810 - L1ME4a LINE L1 -239 5882 5743 25 0 0 0 chr12 97012481 97012506 -47269983 + AT_rich Low_complexity Low_complexity 1 25 0 306 356 53 21 chr12 97012684 97012872 -47269617 + L2 LINE L2 2782 2975 -339 1347 233 63 26 chr12 97012879 97013308 -47269181 - Charlie1 DNA MER1_type -1 2760 2316 863 298 40 0 chr12 97013351 97013623 -47268866 + Charlie1 DNA MER1_type 114 396 -2365 428 250 78 0 chr12 97013637 97013765 -47268724 - Charlie1 DNA MER1_type -413 2348 2211 604 217 183 0 chr12 97013766 97013941 -47268548 - Charlie1 DNA MER1_type -798 1963 1757 * 3350 233 106 53 chr12 97013924 97014618 -47267871 - Charlie1 DNA MER1_type -1480 1281 494 2083 123 13 0 chr12 97014618 97014920 -47267569 - AluSx SINE Alu -6 306 1 3350 233 106 53 chr12 97014920 97015442 -47267047 - Charlie1 DNA MER1_type -2267 494 1 223 293 183 66 chr12 97015470 97015743 -47266746 + L2 LINE L2 3004 3308 -5 23 33 0 0 chr12 97016066 97016096 -47266393 + AT_rich Low_complexity Low_complexity 1 30 0 621 271 69 16 chr12 97016625 97016813 -47265676 + MIR SINE MIR 65 262 0 376 289 54 64 chr12 97016882 97017086 -47265403 + MIR SINE MIR 35 236 -26 43 71 0 0 chr12 97017125 97017210 -47265279 + AT_rich Low_complexity Low_complexity 1 85 0 227 342 50 0 chr12 97017565 97017685 -47264804 - L2 LINE L2 -627 2687 2562 2161 207 166 29 chr12 97017723 97018415 -47264074 - LTR48 LTR ERV1 0 787 1 1329 89 0 26 chr12 97018507 97018697 -47263792 - L1PA8 LINE L1 -1 6171 5987 293 95 0 0 chr12 97018697 97018739 -47263750 + L1PA8 LINE L1 5950 5991 -163 279 54 0 0 chr12 97018782 97018819 -47263670 + (TG)n Simple_repeat Simple_repeat 2 38 0 2119 176 67 7 chr12 97019544 97019948 -47262541 + MSTA LTR MaLR 1 428 0 2184 117 0 7 chr12 97020311 97020618 -47261871 - AluSq SINE Alu -6 307 3 228 224 90 0 chr12 97021099 97021166 -47261323 - L3 LINE CR1 -302 1275 1203 212 411 54 8 chr12 97021410 97021539 -47260950 - MER5A DNA MER1_type 0 189 55 414 91 0 192 chr12 97022066 97022165 -47260324 + MADE1 DNA Mariner 1 80 0 2047 147 27 19 chr12 97022626 97022994 -47259495 + THE1C LTR MaLR 5 375 0 1991 213 40 44 chr12 97023088 97023590 -47258899 - MLT1D LTR MaLR 0 505 6 195 212 106 82 chr12 97024899 97024984 -47257505 - MIR SINE MIR -71 191 105 256 266 79 109 chr12 97025180 97025409 -47257080 + L2 LINE L2 3092 3313 0 21 71 0 0 chr12 97026013 97026055 -47256434 + AT_rich Low_complexity Low_complexity 1 42 0 233 143 0 0 chr12 97026067 97026102 -47256387 + L1ME LINE L1 5602 5636 -485 25 0 0 0 chr12 97026234 97026259 -47256230 + AT_rich Low_complexity Low_complexity 1 25 0 674 149 36 12 chr12 97027318 97027486 -47255003 + CT-rich Low_complexity Low_complexity 1 172 0 * 813 109 17 23 chr12 97027460 97027635 -47254854 + (TTCC)n Simple_repeat Simple_repeat 2 175 0 367 308 119 54 chr12 97028113 97028467 -47254022 - L2 LINE L2 -2 3311 2935 367 332 88 38 chr12 97028444 97028784 -47253705 - L2 LINE L2 -461 2853 2497 262 152 0 0 chr12 97029098 97029144 -47253345 - L2 LINE L2 -1 3312 3267 461 330 110 18 chr12 97030805 97031078 -47251411 + MLT1J2 LTR MaLR 101 398 -52 306 294 84 8 chr12 97031790 97031909 -47250580 - L1ME1 LINE L1 -53 6113 5986 1610 228 50 28 chr12 97031910 97032367 -47250122 - L1ME1 LINE L1 -350 5816 5350 4441 99 37 6 chr12 97032382 97033057 -47249432 - L1MA1 LINE L1 -3 6299 5604 2750 264 78 13 chr12 97033190 97034344 -47248145 - L1ME1 LINE L1 -879 5267 4039 2587 170 38 2 chr12 97034510 97034981 -47247508 - L1PB4 LINE L1 -5 6151 5664 2951 241 22 3 chr12 97034981 97035703 -47246786 + L1PA15-16 LINE L1 2095 2830 -4019 247 219 14 82 chr12 97037105 97037178 -47245311 + L2 LINE L2 3246 3313 0 183 185 37 37 chr12 97037358 97037412 -47245077 + MER5C DNA MER1_type 88 141 -183 23 0 0 0 chr12 97037701 97037724 -47244765 + AT_rich Low_complexity Low_complexity 1 23 0 2183 300 108 11 chr12 97037972 97038972 -47243517 + L2 LINE L2 2212 3312 -1 1767 209 51 32 chr12 97040217 97040652 -47241837 + MLT1C LTR MaLR 8 450 -17 342 217 121 0 chr12 97040738 97040821 -47241668 + MER5A DNA MER1_type 7 99 -90 518 311 17 6 chr12 97040898 97041078 -47241411 - MIR SINE MIR -18 244 63 348 214 0 82 chr12 97041125 97041223 -47241266 + L1MC4 LINE L1 6614 6703 -1339 21 0 0 0 chr12 97042260 97042281 -47240208 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 97042871 97042900 -47239589 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr12 97043651 97043678 -47238811 + AT_rich Low_complexity Low_complexity 1 27 0 1991 139 10 0 chr12 97043685 97043987 -47238502 - AluSx SINE Alu -7 305 1 1366 298 129 24 chr12 97043998 97044901 -47237588 + L2 LINE L2 2335 3313 0 2412 67 0 0 chr12 97045407 97045706 -47236783 - AluY SINE Alu -12 299 1 2255 99 0 19 chr12 97045771 97046083 -47236406 + AluSg SINE Alu 3 308 -2 4223 241 65 21 chr12 97046398 97047779 -47234710 + L1M4 LINE L1 3601 5042 -1104 4861 93 13 9 chr12 97047869 97048558 -47233931 + L1PA8A LINE L1 5437 6128 -3 363 281 31 0 chr12 97048558 97048654 -47233835 + L1MC4 LINE L1 6920 7018 -1024 244 333 50 25 chr12 97049224 97049344 -47233145 + L2 LINE L2 2932 3054 -218 191 259 89 89 chr12 97049487 97049645 -47232844 - L2 LINE L2 -4 3309 3152 21 0 0 0 chr12 97049660 97049681 -47232808 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr12 97051243 97051277 -47231212 + AT_rich Low_complexity Low_complexity 1 34 0 215 333 76 21 chr12 97051613 97051757 -47230732 - MIR SINE MIR -13 249 98 180 111 0 0 chr12 97052013 97052040 -47230449 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 409 314 34 39 chr12 97052073 97052280 -47230209 - MIR SINE MIR -10 252 47 537 356 46 13 chr12 97052477 97052716 -47229773 + MIR SINE MIR 13 259 -3 342 0 0 0 chr12 97052949 97052987 -47229502 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 226 336 91 0 chr12 97053576 97053686 -47228803 + L2 LINE L2 3192 3311 -2 441 328 154 5 chr12 97053709 97053904 -47228585 - MIR SINE MIR -25 237 14 2472 48 0 0 chr12 97054967 97055261 -47227228 - AluY SINE Alu -17 294 1 1964 133 7 0 chr12 97056013 97056306 -47226183 + AluSx SINE Alu 1 295 -17 280 265 12 12 chr12 97056360 97056443 -47226046 + (TA)n Simple_repeat Simple_repeat 2 84 0 242 313 73 22 chr12 97056573 97056796 -47225693 - L1MC/D LINE L1 -624 5559 5346 190 277 0 0 chr12 97057758 97057805 -47224684 - MIR SINE MIR -12 250 204 736 256 74 22 chr12 97057837 97058067 -47224422 + MIR SINE MIR 21 262 0 21 0 0 0 chr12 97058089 97058110 -47224379 + AT_rich Low_complexity Low_complexity 1 21 0 29 70 0 0 chr12 97058750 97058807 -47223682 + AT_rich Low_complexity Low_complexity 1 57 0 2272 88 0 3 chr12 97059277 97059572 -47222917 - AluSc SINE Alu -15 294 1 651 326 102 34 chr12 97059997 97060470 -47222019 - L3 LINE CR1 -124 1453 949 369 348 21 21 chr12 97060643 97060784 -47221705 + LTR33 LTR ERVL 32 172 -349 403 205 90 16 chr12 97060842 97060964 -47221525 + LTR33 LTR ERVL 389 519 -2 2412 14 0 0 chr12 97061433 97061710 -47220779 + L1HS LINE L1 5876 6152 -3 219 69 0 0 chr12 97061734 97061763 -47220726 + (A)n Simple_repeat Simple_repeat 1 29 0 189 74 0 0 chr12 97061785 97061812 -47220677 + (A)n Simple_repeat Simple_repeat 1 27 0 339 367 25 0 chr12 97063134 97063254 -47219235 - L2 LINE L2 -1 3271 3149 23 0 0 0 chr12 97063446 97063469 -47219020 + AT_rich Low_complexity Low_complexity 1 23 0 29 78 0 0 chr12 97064243 97064307 -47218182 + AT_rich Low_complexity Low_complexity 1 64 0 181 372 35 12 chr12 97064380 97064466 -47218023 - MIR SINE MIR -105 103 16 191 238 0 0 chr12 97064628 97064670 -47217819 - MIR3 SINE MIR -16 192 151 342 61 0 0 chr12 97064784 97064833 -47217656 + (CA)n Simple_repeat Simple_repeat 2 50 0 364 343 52 37 chr12 97065027 97065161 -47217328 - MIR3 SINE MIR -52 156 21 1980 116 33 7 chr12 97065162 97065464 -47217025 - AluY SINE Alu -1 310 1 1625 156 64 10 chr12 97066448 97066743 -47215746 + AluJo SINE Alu 1 311 -1 472 185 97 19 chr12 97066765 97066980 -47215509 + L1MC5 LINE L1 7539 7861 -100 2604 42 0 3 chr12 97067115 97067423 -47215066 + AluY SINE Alu 1 307 -4 23 54 0 0 chr12 97068243 97068280 -47214209 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr12 97068531 97068566 -47213923 + AT_rich Low_complexity Low_complexity 1 35 0 605 266 145 67 chr12 97068698 97069250 -47213239 + MLT1G1 LTR MaLR 1 595 0 184 250 23 80 chr12 97071589 97071677 -47210812 - L3b LINE CR1 -267 1316 1234 287 303 139 8 chr12 97071959 97072081 -47210408 - MIR SINE MIR -114 148 11 24 77 0 0 chr12 97073493 97073545 -47208944 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr12 97073608 97073638 -47208851 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr12 97073837 97073857 -47208632 + (TTG)n Simple_repeat Simple_repeat 2 21 0 301 331 39 0 chr12 97074334 97074464 -47208025 + L2 LINE L2 3178 3312 -1 237 108 0 0 chr12 97075468 97075505 -47206984 + (GA)n Simple_repeat Simple_repeat 2 38 0 415 346 31 9 chr12 97076307 97076535 -47205954 + L2 LINE L2 2526 2758 -556 207 279 201 17 chr12 97076787 97076966 -47205523 + L2 LINE L2 3079 3290 -23 675 108 34 27 chr12 97077616 97077764 -47204725 + GA-rich Low_complexity Low_complexity 2 150 0 198 193 0 0 chr12 97078467 97078524 -47203965 + (TG)n Simple_repeat Simple_repeat 1 57 0 22 35 0 0 chr12 97079127 97079156 -47203333 + AT_rich Low_complexity Low_complexity 1 29 0 212 327 67 10 chr12 97081553 97081657 -47200832 + L2 LINE L2 3203 3312 -1 245 278 0 28 chr12 97081777 97081849 -47200640 + GA-rich Low_complexity Low_complexity 2 71 0 624 286 12 23 chr12 97081909 97082129 -47200360 + MIR SINE MIR 45 262 0 463 274 99 55 chr12 97082118 97082319 -47200170 - MIR SINE MIR -50 212 3 * 201 271 125 31 chr12 97082596 97082692 -47199797 - MIR SINE MIR -63 145 41 552 268 13 26 chr12 97083342 97083495 -47198994 + MIR SINE MIR 88 238 -24 21 36 0 0 chr12 97083952 97083980 -47198509 + AT_rich Low_complexity Low_complexity 1 28 0 191 413 84 19 chr12 97084358 97084571 -47197918 - L2 LINE L2 -179 3093 2867 219 317 117 25 chr12 97084856 97084976 -47197513 - L2 LINE L2 -577 2737 2607 416 256 307 0 chr12 97085941 97086117 -47196372 + MIR SINE MIR 3 232 -30 1050 211 41 23 chr12 97087326 97087592 -47194897 - L1MB4 LINE L1 -1 6179 5909 2426 62 0 3 chr12 97088299 97088605 -47193884 + AluY SINE Alu 1 305 -6 488 261 18 0 chr12 97088806 97088917 -47193572 + L2 LINE L2 3191 3303 -10 2116 183 42 40 chr12 97089755 97090182 -47192307 + MSTA LTR MaLR 1 428 0 3393 155 53 20 chr12 97090264 97090955 -47191534 + L1MA7 LINE L1 5572 6285 -6 23 54 0 0 chr12 97091625 97091662 -47190827 + AT_rich Low_complexity Low_complexity 1 37 0 4154 218 112 74 chr12 97091718 97092771 -47189718 - L1MCa LINE L1 -3059 3367 2355 468 0 0 0 chr12 97092771 97092823 -47189666 + (TA)n Simple_repeat Simple_repeat 2 53 0 4154 218 112 74 chr12 97092823 97093362 -47189127 - L1MCa LINE L1 -4071 2355 1838 2082 134 49 0 chr12 97093362 97093706 -47188783 - THE1B LTR MaLR -3 361 1 4154 218 112 74 chr12 97093706 97095338 -47187151 - L1MCa LINE L1 -4588 1838 21 3256 190 16 4 chr12 97095477 97096049 -47186440 - L1MB1 LINE L1 -4 6164 5600 436 128 26 0 chr12 97096049 97096127 -47186362 - MADE1 DNA Mariner 0 80 1 3256 190 16 4 chr12 97096127 97096864 -47185625 - L1MB1 LINE L1 -568 5600 4696 182 386 136 30 chr12 97096902 97097034 -47185455 + L2 LINE L2 2549 2694 -620 1964 128 7 33 chr12 97097063 97097368 -47185121 + AluSx SINE Alu 3 299 -13 812 229 19 29 chr12 97097642 97097847 -47184642 + MER3 DNA MER1_type 1 203 -6 292 353 50 29 chr12 97099921 97100060 -47182429 + MIR SINE MIR 37 178 -84 378 254 54 62 chr12 97100223 97100353 -47182136 + L2 LINE L2 3185 3313 0 225 258 48 0 chr12 97100461 97100523 -47181966 - Charlie8 DNA MER1_type -2156 261 197 29 0 0 0 chr12 97101473 97101502 -47180987 + AT_rich Low_complexity Low_complexity 1 29 0 311 87 0 0 chr12 97102499 97102545 -47179944 - MADE1 DNA Mariner -34 46 1 1551 201 103 48 chr12 97103156 97103633 -47178856 - MLT1D LTR MaLR -2 503 1 6945 63 10 0 chr12 97104096 97105777 -47176712 - L1PA7 LINE L1 -2 6152 4462 370 400 57 4 chr12 97107092 97107337 -47175152 + MIR SINE MIR 3 260 -2 398 297 83 75 chr12 97107368 97107446 -47175043 - LTR33 LTR ERVL -33 488 412 851 220 0 0 chr12 97107446 97107605 -47174884 + FRAM SINE Alu 1 159 -7 398 297 83 75 chr12 97107605 97108007 -47174482 - LTR33 LTR ERVL -109 412 4 22 35 0 0 chr12 97108848 97108877 -47173612 + AT_rich Low_complexity Low_complexity 1 29 0 210 191 0 0 chr12 97108892 97108934 -47173555 + CT-rich Low_complexity Low_complexity 2 43 0 696 24 0 0 chr12 97109710 97109792 -47172697 + (TA)n Simple_repeat Simple_repeat 1 82 0 219 355 89 18 chr12 97109962 97110131 -47172358 + MIR3 SINE MIR 10 190 -18 2012 132 0 0 chr12 97110233 97110528 -47171961 - AluSc SINE Alu -14 295 1 4777 162 25 6 chr12 97110549 97111431 -47171058 - L1PB4 LINE L1 -4 6152 5254 271 98 0 0 chr12 97111439 97111480 -47171009 + L1PB4 LINE L1 5190 5230 -916 300 270 9 63 chr12 97111488 97111599 -47170890 - L1MC2 LINE L1 -24 6320 6216 2798 205 11 28 chr12 97111600 97112209 -47170280 - L1MC2 LINE L1 -242 6102 5504 428 311 145 9 chr12 97112846 97113074 -47169415 + MIR SINE MIR 3 261 -1 199 235 24 59 chr12 97113262 97113347 -47169142 + L2 LINE L2 3154 3235 -78 350 290 84 60 chr12 97113373 97113790 -47168699 - MLT1L LTR MaLR 0 588 190 526 278 0 0 chr12 97114154 97114269 -47168220 + L2 LINE L2 3195 3309 -4 230 304 78 52 chr12 97114551 97114742 -47167747 + L2 LINE L2 2658 2853 -461 318 87 0 0 chr12 97114752 97114798 -47167691 + (TTC)n Simple_repeat Simple_repeat 1 46 0 418 283 40 100 chr12 97114855 97115155 -47167334 + L2 LINE L2 2996 3277 -36 3039 28 0 0 chr12 97115812 97116169 -47166320 - L1PA4 LINE L1 -3 6152 5796 198 301 110 0 chr12 97116734 97116807 -47165682 - L2 LINE L2 -4 3268 3188 230 164 49 33 chr12 97116815 97116876 -47165613 + MLT1F LTR MaLR 481 542 -25 306 89 22 0 chr12 97117122 97117167 -47165322 + MLT1F LTR MaLR 494 539 -3 269 339 27 55 chr12 97117262 97117445 -47165044 + MIR SINE MIR 28 205 -57 274 282 49 70 chr12 97117466 97117608 -47164881 - L2 LINE L2 -592 2722 2584 325 366 138 36 chr12 97117658 97118021 -47164468 - L3 LINE CR1 -262 1315 916 293 218 141 0 chr12 97118436 97118514 -47163975 - L2 LINE L2 0 3272 3184 30 27 0 0 chr12 97118809 97118846 -47163643 + AT_rich Low_complexity Low_complexity 1 37 0 331 202 151 17 chr12 97119286 97119405 -47163084 + L1MC5 LINE L1 7792 7926 -35 405 309 62 34 chr12 97120804 97120982 -47161507 - L2 LINE L2 -1 3312 3130 270 333 93 13 chr12 97120989 97121139 -47161350 + MIR SINE MIR 57 218 -44 240 218 0 0 chr12 97121861 97121916 -47160573 + T-rich Low_complexity Low_complexity 1 55 0 24 32 0 0 chr12 97123645 97123676 -47158813 + AT_rich Low_complexity Low_complexity 1 31 0 199 339 65 0 chr12 97123828 97123890 -47158599 - L2 LINE L2 0 3313 3248 186 133 0 0 chr12 97126667 97126697 -47155792 + (A)n Simple_repeat Simple_repeat 1 30 0 647 216 0 0 chr12 97127335 97127460 -47155029 - MER94 DNA DNA -9 125 1 433 266 82 59 chr12 97129263 97129344 -47153145 + L1ME4a LINE L1 5717 5795 -326 407 110 37 12 chr12 97129344 97129426 -47153063 + L1PA13 LINE L1 6078 6161 -2 433 266 82 59 chr12 97129426 97129454 -47153035 + L1ME4a LINE L1 5795 5821 -300 22934 41 0 0 chr12 97129454 97133063 -47149426 + L1PA4 LINE L1 2546 6153 -2 433 266 82 59 chr12 97133063 97133343 -47149146 + L1ME4a LINE L1 5821 6116 -5 343 316 123 0 chr12 97134145 97134259 -47148230 - L2 LINE L2 -2 3270 3143 1552 156 197 8 chr12 97134508 97134868 -47147621 - MSTA LTR MaLR 0 428 1 496 266 79 30 chr12 97134983 97135186 -47147303 - MIR SINE MIR -6 256 44 234 167 0 37 chr12 97135193 97135247 -47147242 + T-rich Low_complexity Low_complexity 3 54 0 265 240 23 76 chr12 97135271 97135442 -47147047 - L1P5 LINE L1 -688 5433 5275 * 6664 82 6 0 chr12 97135413 97136324 -47146165 - L1PA8 LINE L1 0 6172 5257 243 61 0 0 chr12 97136511 97136544 -47145945 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 21 0 0 0 chr12 97136646 97136667 -47145822 + AT_rich Low_complexity Low_complexity 1 21 0 443 209 71 171 chr12 97138602 97138841 -47143648 - MER58 DNA MER1_type 0 2420 1 222 105 0 0 chr12 97138930 97138968 -47143521 + (A)n Simple_repeat Simple_repeat 1 38 0 232 391 71 18 chr12 97139109 97139334 -47143155 - L3b LINE CR1 -245 1338 1102 12428 111 16 49 chr12 97139666 97142300 -47140189 + L1P3 LINE L1 4 2650 -3811 590 249 131 0 chr12 97142302 97142523 -47139966 + L1M4 LINE L1 4477 4726 -1420 3208 72 5 0 chr12 97142523 97142942 -47139547 + L1PA7 LINE L1 5729 6149 -5 27 29 0 0 chr12 97142987 97143021 -47139468 + AT_rich Low_complexity Low_complexity 1 34 0 6109 246 86 18 chr12 97143021 97146336 -47136153 - L1MD2 LINE L1 -298 6061 2513 28 29 0 0 chr12 97146824 97146859 -47135630 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr12 97146867 97146887 -47135602 + (T)n Simple_repeat Simple_repeat 1 20 0 3840 171 87 3 chr12 97148218 97148989 -47133500 - L1MB1 LINE L1 -1 6167 5332 210 358 32 11 chr12 97149618 97149713 -47132776 - MIR SINE MIR -60 148 52 1716 199 27 3 chr12 97150175 97150511 -47131978 - MER2 DNA MER2_type -1 344 1 812 259 98 82 chr12 97150521 97151475 -47131014 - Charlie2 DNA MER1_type -119 2743 1774 794 246 41 75 chr12 97151684 97152195 -47130294 - L1ME LINE L1 -552 5614 5127 2089 229 31 10 chr12 97152196 97152712 -47129777 + L1ME1 LINE L1 5622 6148 -18 267 267 236 22 chr12 97152860 97153085 -47129404 - Charlie2 DNA MER1_type -2329 533 261 746 225 7 7 chr12 97153616 97153767 -47128722 - LTR32 LTR ERVL -4 467 317 1947 182 27 0 chr12 97153822 97154151 -47128338 - LTR32 LTR ERVL -119 352 15 833 227 0 0 chr12 97154999 97155149 -47127340 - MER5A DNA MER1_type -39 150 1 434 322 42 14 chr12 97155149 97155292 -47127197 - MIR3 SINE MIR -48 160 14 502 306 98 14 chr12 97156507 97156854 -47125635 - LTR16B LTR ERVL 0 464 67 582 368 37 21 chr12 97157012 97157444 -47125045 - HERV16 LTR ERVL -405 5359 4921 2467 155 33 0 chr12 97157455 97158000 -47124489 + L1MA4A LINE L1 5657 6280 -23 913 342 79 29 chr12 97158002 97158986 -47123503 - HERV16 LTR ERVL -653 4832 3855 * 2375 336 50 24 chr12 97158973 97160672 -47121817 - HERV16 LTR ERVL -1577 3544 1953 262 343 9 9 chr12 97161214 97161322 -47121167 - MER91C DNA MER1_type -31 109 2 226 133 0 33 chr12 97161554 97161614 -47120875 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 2135 85 64 3 chr12 97162613 97162908 -47119581 - AluSp SINE Alu 0 313 1 216 196 0 22 chr12 97163254 97163300 -47119189 + GA-rich Low_complexity Low_complexity 4 48 0 273 320 86 23 chr12 97164052 97164180 -47118309 + L2 LINE L2 2190 2325 -989 335 43 0 0 chr12 97164180 97164226 -47118263 + MADE1 DNA Mariner 1 46 -34 545 314 50 89 chr12 97164372 97165038 -47117451 + L2 LINE L2 2585 3263 -9 757 279 110 71 chr12 97165902 97166340 -47116149 + LTR67 LTR ERVL 97 551 -6 481 56 42 0 chr12 97168296 97168368 -47114121 + L1PA8 LINE L1 6097 6171 -1 784 338 67 50 chr12 97168686 97169462 -47113027 - L2 LINE L2 -243 3070 2283 253 271 94 0 chr12 97171193 97171278 -47111211 + MIR SINE MIR 59 151 -57 224 250 0 87 chr12 97172164 97172256 -47110233 - MIR SINE MIR -54 208 125 737 251 42 94 chr12 97174450 97174757 -47107732 + L2 LINE L2 261 551 -2763 1281 132 16 80 chr12 97174758 97174835 -47107654 + L1MA4A LINE L1 6038 6118 -185 375 41 0 0 chr12 97174835 97174884 -47107605 + (TG)n Simple_repeat Simple_repeat 2 50 0 1281 132 16 80 chr12 97174884 97174895 -47107594 + L1MA4A LINE L1 6118 6128 -175 2502 58 0 0 chr12 97174895 97175190 -47107299 - AluY SINE Alu -15 296 2 1281 132 16 80 chr12 97175190 97175351 -47107138 + L1MA4A LINE L1 6128 6272 -31 312 274 26 0 chr12 97175351 97175468 -47107021 + L2 LINE L2 685 804 -2510 * 893 290 87 46 chr12 97175467 97175881 -47106608 + L2 LINE L2 2879 3309 -4 24 0 0 0 chr12 97176833 97176857 -47105632 + AT_rich Low_complexity Low_complexity 1 24 0 191 323 15 83 chr12 97176928 97177061 -47105428 - L2 LINE L2 -221 3051 2928 211 276 20 41 chr12 97177361 97177459 -47105030 + CT-rich Low_complexity Low_complexity 2 97 0 389 374 20 14 chr12 97177486 97177633 -47104856 - L2 LINE L2 0 3272 3125 268 370 52 12 chr12 97177617 97177790 -47104699 - L2 LINE L2 -399 2915 2736 * 560 324 152 21 chr12 97177787 97178269 -47104220 + L2 LINE L2 1805 2349 -965 2294 75 0 41 chr12 97178812 97179132 -47103357 - AluY SINE Alu -4 307 1 1243 209 80 35 chr12 97179153 97179526 -47102963 - MLT1B LTR MaLR 0 390 1 850 272 159 14 chr12 97179606 97180184 -47102305 + L1M4 LINE L1 3592 4253 -1893 * 3031 14 11 0 chr12 97180175 97180524 -47101965 - L1PA3 LINE L1 -271 5884 5532 393 0 0 0 chr12 97180524 97180567 -47101922 + L1PA3 LINE L1 6106 6155 0 1144 249 108 18 chr12 97180568 97181130 -47101359 + L1M4 LINE L1 4233 4845 -1301 229 270 0 22 chr12 97181190 97181279 -47101210 + L1MC4 LINE L1 6614 6700 -1342 274 193 0 0 chr12 97181305 97181362 -47101127 + MLT2B1 LTR ERVL 464 520 0 30 0 0 0 chr12 97181373 97181403 -47101086 + AT_rich Low_complexity Low_complexity 1 30 0 288 247 25 0 chr12 97181495 97181576 -47100913 + L1ME3A LINE L1 6082 6164 -6 902 284 116 47 chr12 97181595 97181755 -47100734 + L1M4 LINE L1 4178 4326 -1820 1844 161 3 3 chr12 97181755 97182047 -47100442 + AluSx SINE Alu 3 294 -18 902 284 116 47 chr12 97182047 97182967 -47099522 + L1M4 LINE L1 4326 5332 -814 2819 35 6 6 chr12 97182982 97183330 -47099159 + L1PA2 LINE L1 5806 6153 -2 201 74 0 0 chr12 97183346 97183373 -47099116 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1164 156 0 0 chr12 97183463 97183643 -47098846 + L1M4 LINE L1 20 199 -6185 1994 239 30 41 chr12 97183645 97184303 -47098186 + L1M4 LINE L1 2491 3141 -3241 828 214 21 0 chr12 97184303 97184495 -47097994 + L1MA6 LINE L1 6095 6290 -10 1994 239 30 41 chr12 97184495 97184625 -47097864 + L1M4 LINE L1 3141 3271 -3111 1274 171 0 31 chr12 97184627 97184855 -47097634 + AluJb SINE Alu 49 269 -43 831 231 151 3 chr12 97184864 97185201 -47097288 + L1M4 LINE L1 3264 3650 -2732 283 130 0 19 chr12 97185207 97185261 -47097228 + L1M4 LINE L1 4085 4137 -2245 709 215 101 30 chr12 97185870 97186107 -47096382 + L1M1 LINE L1 3895 4148 -1998 283 275 28 107 chr12 97186120 97186411 -47096078 + L1ME3A LINE L1 5851 6118 -52 241 220 17 17 chr12 97187001 97187060 -47095429 + L1M1 LINE L1 5696 5754 -550 9559 198 22 7 chr12 97188115 97191234 -47091255 - L1PA15 LINE L1 -8 6157 2995 7229 230 25 41 chr12 97191238 97194180 -47088309 + L1M2 LINE L1 2 3287 -3561 3135 62 2 44 chr12 97194206 97194602 -47087887 - L1PA8 LINE L1 -14 6158 5782 2097 137 3 0 chr12 97194602 97194894 -47087595 - AluSc SINE Alu -16 293 1 3135 62 2 44 chr12 97194894 97194951 -47087538 - L1PA8 LINE L1 -390 5782 5724 1141 95 0 0 chr12 97194951 97195099 -47087390 - AluY SINE Alu -23 288 141 5939 87 4 1 chr12 97195099 97196330 -47086159 - L1P3 LINE L1 -441 5731 4499 15024 143 26 2 chr12 97196332 97199851 -47082638 + L1PA10 LINE L1 2579 6178 0 1981 243 7 16 chr12 97199872 97200431 -47082058 - L1P LINE L1 -3180 2966 2413 * 2902 215 10 2 chr12 97200430 97201167 -47081322 + L1P LINE L1 2366 3108 -3741 276 353 89 71 chr12 97201673 97202067 -47080422 + L2 LINE L2 2849 3249 -23 413 254 18 18 chr12 97202700 97202814 -47079675 + MER81 DNA DNA 1 114 0 4537 111 3 13 chr12 97203130 97203827 -47078662 + L1PA13 LINE L1 5474 6163 0 313 376 146 0 chr12 97204876 97205041 -47077448 - MER5A DNA MER1_type 0 189 1 1647 208 6 23 chr12 97205223 97205565 -47076924 - MLT1A1 LTR MaLR -29 336 1 251 349 12 0 chr12 97207332 97207415 -47075074 + MARNA DNA Mariner 130 213 -373 22 35 0 0 chr12 97207476 97207505 -47074984 + AT_rich Low_complexity Low_complexity 1 29 0 1122 184 0 0 chr12 97208427 97208623 -47073866 - L1PA13 LINE L1 -1130 5016 4821 5065 111 48 38 chr12 97208633 97209747 -47072742 + L1PA13 LINE L1 5024 6146 -17 384 307 31 6 chr12 97209874 97210048 -47072441 + MIR SINE MIR 45 222 -40 998 309 142 23 chr12 97210279 97211007 -47071482 - L2 LINE L2 -560 2754 1941 227 277 0 0 chr12 97211020 97211067 -47071422 + L2 LINE L2 3210 3256 -16 685 254 0 58 chr12 97211104 97211224 -47071265 + MIR SINE MIR 12 121 -141 1906 142 3 39 chr12 97211224 97211535 -47070954 - AluSx SINE Alu -12 300 1 685 254 0 58 chr12 97211535 97211587 -47070902 + MIR SINE MIR 121 174 -88 4984 174 24 33 chr12 97211801 97212762 -47069727 - L1MA7 LINE L1 -4 6287 5336 1317 219 41 41 chr12 97212762 97213127 -47069362 - MLT1A1 LTR MaLR 0 365 1 4984 174 24 33 chr12 97213127 97213533 -47068956 - L1MA7 LINE L1 -955 5336 4928 331 341 22 54 chr12 97213567 97213790 -47068699 - LTR33 LTR ERVL -11 510 295 327 335 43 31 chr12 97213856 97214017 -47068472 - LTR33 LTR ERVL -339 182 20 26 50 0 0 chr12 97214686 97214726 -47067763 + AT_rich Low_complexity Low_complexity 1 40 0 298 262 0 36 chr12 97216483 97216567 -47065922 - MIR SINE MIR -59 149 72 1300 129 51 28 chr12 97216795 97217050 -47065439 - L1MA7 LINE L1 -310 5981 5721 453 36 0 0 chr12 97217082 97217137 -47065352 + (C)n Simple_repeat Simple_repeat 1 55 0 1844 161 3 3 chr12 97217563 97217855 -47064634 - AluSx SINE Alu -18 294 3 23 54 0 0 chr12 97217857 97217894 -47064595 + AT_rich Low_complexity Low_complexity 1 37 0 312 235 25 0 chr12 97218034 97218115 -47064374 - L1ME3A LINE L1 -6 6164 6082 30 0 0 0 chr12 97218207 97218237 -47064252 + AT_rich Low_complexity Low_complexity 1 30 0 298 175 0 0 chr12 97218248 97218305 -47064184 - MLT2B1 LTR ERVL 0 520 464 204 40 0 0 chr12 97218331 97218356 -47064133 + (TA)n Simple_repeat Simple_repeat 2 26 0 283 214 24 48 chr12 97218357 97218441 -47064048 + L1MC4 LINE L1 6615 6696 -1346 198 0 0 0 chr12 97218441 97218463 -47064026 + (TG)n Simple_repeat Simple_repeat 1 22 0 271 217 33 0 chr12 97219582 97219642 -47062847 + L1MA6 LINE L1 6158 6219 -81 1000 141 50 0 chr12 97219645 97219843 -47062646 + L1MA6 LINE L1 6093 6300 0 188 111 28 0 chr12 97219911 97219947 -47062542 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3605 54 0 0 chr12 97220091 97220538 -47061951 + L1PA6 LINE L1 5708 6154 0 236 149 21 0 chr12 97221077 97221124 -47061365 + (TA)n Simple_repeat Simple_repeat 2 49 0 1884 120 43 10 chr12 97221591 97221891 -47060598 - AluSx SINE Alu -2 310 1 206 253 0 66 chr12 97221896 97221974 -47060515 + MIR SINE MIR 81 133 -75 941 197 19 38 chr12 97222459 97222502 -47059987 + MER3 DNA MER1_type 1 43 -166 12653 131 48 71 chr12 97222502 97224355 -47058134 - Tigger1 DNA MER2_type 0 2418 633 1899 155 3 3 chr12 97224355 97224646 -47057843 - AluSx SINE Alu -21 291 1 12653 131 48 71 chr12 97224646 97225266 -47057223 - Tigger1 DNA MER2_type -1785 633 1 941 197 19 38 chr12 97225266 97225435 -47057054 + MER3 DNA MER1_type 43 209 0 335 223 13 55 chr12 97225659 97225768 -47056721 + MIR3 SINE MIR 79 183 -25 26 0 0 0 chr12 97226476 97226502 -47055987 + AT_rich Low_complexity Low_complexity 1 26 0 2180 106 3 10 chr12 97228761 97229064 -47053425 - AluSx SINE Alu -11 301 1 267 173 0 0 chr12 97229314 97229366 -47053123 + (TA)n Simple_repeat Simple_repeat 2 53 0 22 0 0 0 chr12 97229525 97229547 -47052942 + AT_rich Low_complexity Low_complexity 1 22 0 36 53 0 0 chr12 97229589 97229646 -47052843 + AT_rich Low_complexity Low_complexity 1 57 0 317 109 18 0 chr12 97229980 97230035 -47052454 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 418 188 59 10 chr12 97230387 97230488 -47052001 + MER69 DNA AcHobo 2420 2525 -1 202 340 19 19 chr12 97230577 97230680 -47051809 - MER5A DNA MER1_type 0 189 87 303 49 0 0 chr12 97230702 97230743 -47051746 + (TG)n Simple_repeat Simple_repeat 2 42 0 28 107 0 0 chr12 97231911 97232023 -47050466 + AT_rich Low_complexity Low_complexity 1 112 0 348 283 139 48 chr12 97232721 97232908 -47049581 + MIR SINE MIR 47 250 -12 2330 209 98 21 chr12 97233552 97234204 -47048285 + L1MC4a LINE L1 7013 7714 -94 367 176 27 0 chr12 97234211 97234285 -47048204 + L1MC4 LINE L1 7833 7908 -134 201 265 20 0 chr12 97234356 97234405 -47048084 + GA-rich Low_complexity Low_complexity 2 51 0 543 168 8 61 chr12 97234406 97234537 -47047952 + L1MC4 LINE L1 7919 8042 0 244 273 0 15 chr12 97234539 97234605 -47047884 + GA-rich Low_complexity Low_complexity 3 67 0 1896 158 82 15 chr12 97234708 97235049 -47047440 - THE1B LTR MaLR 0 364 1 275 292 14 0 chr12 97235159 97235231 -47047258 + L2 LINE L2 3229 3301 -12 3264 252 94 35 chr12 97236079 97236207 -47046282 - L1ME1 LINE L1 -6 6172 6053 735 81 0 0 chr12 97236207 97236306 -47046183 + L1PA11 LINE L1 6075 6173 -1 3264 252 94 35 chr12 97236306 97238435 -47044054 - L1ME1 LINE L1 -125 6053 3782 440 239 98 55 chr12 97238448 97238611 -47043878 + L1M4 LINE L1 3657 3826 -2320 574 206 54 22 chr12 97238950 97239110 -47043379 + MLT1A2 LTR MaLR 238 374 0 599 347 43 18 chr12 97239923 97240200 -47042289 - L2 LINE L2 -163 3150 2867 1995 142 26 42 chr12 97241231 97241612 -47040877 - THE1C LTR MaLR 0 375 1 272 376 4 30 chr12 97243943 97244165 -47038324 - MIR SINE MIR -46 216 3 307 290 210 0 chr12 97246188 97246350 -47036139 - MIR SINE MIR -44 218 23 1780 212 16 48 chr12 97248268 97248768 -47033721 - MER31A LTR ERV1 0 485 2 25 0 0 0 chr12 97249223 97249248 -47033241 + AT_rich Low_complexity Low_complexity 1 25 0 433 193 44 72 chr12 97250008 97250189 -47032300 - MER53 DNA DNA 0 189 14 323 301 155 18 chr12 97250448 97250674 -47031815 - MLT1L LTR MaLR -10 605 349 702 222 0 32 chr12 97251270 97251390 -47031099 + L1M4 LINE L1 4747 4860 -1286 2647 153 7 2 chr12 97251390 97251816 -47030673 + MSTA LTR MaLR 1 428 0 702 222 0 32 chr12 97251816 97251880 -47030609 + L1M4 LINE L1 4860 4925 -1221 629 245 16 40 chr12 97251878 97252127 -47030362 + L1M4 LINE L1 5160 5402 -744 * 426 173 49 0 chr12 97252132 97252213 -47030276 - MLT1A1 LTR MaLR 0 365 281 2046 128 4 0 chr12 97252341 97252660 -47029829 + AluSx SINE Alu 2 321 0 28 29 0 0 chr12 97252673 97252708 -47029781 + AT_rich Low_complexity Low_complexity 1 35 0 535 220 47 40 chr12 97252862 97253034 -47029455 - MLT1A1 LTR MaLR -91 283 110 190 283 94 66 chr12 97253034 97253140 -47029349 + L2 LINE L2 3205 3313 0 * 586 287 20 0 chr12 97253138 97253288 -47029201 - MIR SINE MIR -109 153 1 21 0 0 0 chr12 97253525 97253546 -47028943 + AT_rich Low_complexity Low_complexity 1 21 0 2960 116 7 0 chr12 97253649 97254082 -47028407 - L1PA13 LINE L1 -2 6161 5726 353 279 68 14 chr12 97254597 97254744 -47027745 + MIR SINE MIR 95 249 -13 189 375 0 12 chr12 97254765 97254845 -47027644 + L2 LINE L2 3235 3313 0 28 71 0 0 chr12 97255710 97255766 -47026723 + AT_rich Low_complexity Low_complexity 1 56 0 718 237 47 28 chr12 97257273 97257488 -47025001 + MLT1H LTR MaLR 1 219 -330 1164 50 0 0 chr12 97257519 97257660 -47024829 + L1PA7 LINE L1 6003 6143 -11 649 263 80 89 chr12 97259028 97259466 -47023023 - MLT1J LTR MaLR -63 448 15 643 268 8 33 chr12 97260031 97260245 -47022244 - L1PA12 LINE L1 -6223 1361 44 402 340 7 21 chr12 97260973 97261114 -47021375 + L2 LINE L2 3134 3272 0 532 299 87 17 chr12 97261253 97261484 -47021005 + MIR SINE MIR 4 250 -12 246 176 0 0 chr12 97261895 97261946 -47020543 + T-rich Low_complexity Low_complexity 1 51 0 1828 196 20 45 chr12 97262244 97262344 -47020145 - MLT1B LTR MaLR 0 390 289 3801 89 12 25 chr12 97262344 97262905 -47019584 - MER41A LTR ERV1 0 554 1 1828 196 20 45 chr12 97262905 97263202 -47019287 - MLT1B LTR MaLR -101 289 3 284 233 43 95 chr12 97263285 97263401 -47019088 + L2 LINE L2 3173 3282 -31 189 196 65 22 chr12 97263461 97263507 -47018982 + L2 LINE L2 3262 3309 -4 463 354 36 18 chr12 97263792 97264015 -47018474 + MER115 DNA AcHobo 40 266 -427 417 304 10 9 chr12 97264296 97264425 -47018064 + MIR SINE MIR 33 163 -45 1782 162 0 24 chr12 97265127 97265424 -47017065 - AluJb SINE Alu -22 290 1 21 36 0 0 chr12 97266142 97266170 -47016319 + AT_rich Low_complexity Low_complexity 1 28 0 1022 229 82 50 chr12 97266360 97266797 -47015692 + LTR16A1 LTR ERVL 5 455 -2 746 176 0 15 chr12 97267663 97267794 -47014695 - FLAM_C SINE Alu -12 131 3 1902 90 24 52 chr12 97268746 97269036 -47013453 - AluSx SINE Alu -30 282 1 293 348 18 0 chr12 97269232 97269344 -47013145 + MIR SINE MIR 32 145 -63 270 0 0 0 chr12 97269373 97269403 -47013086 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 723 291 116 54 chr12 97269829 97270293 -47012196 - LTR33 LTR ERVL -4 517 25 2186 123 0 0 chr12 97270645 97270947 -47011542 - AluSx SINE Alu -10 302 1 829 127 6 66 chr12 97271928 97272070 -47010419 + MLT1B LTR MaLR 1 132 -258 996 226 29 27 chr12 97272070 97272280 -47010209 - MLT1A1 LTR MaLR 0 365 119 2222 96 0 0 chr12 97272280 97272589 -47009900 - AluSq SINE Alu 0 310 2 996 226 29 27 chr12 97272589 97272701 -47009788 - MLT1A1 LTR MaLR -246 119 9 1762 138 10 20 chr12 97272773 97273306 -47009183 + MER4A LTR ERV1 1 664 0 358 298 48 32 chr12 97274145 97274269 -47008220 - L2 LINE L2 -13 3300 3175 588 233 21 69 chr12 97274303 97274492 -47007997 + MER5A DNA MER1_type 1 180 -9 262 346 12 74 chr12 97274360 97274495 -47007994 - MER5A DNA MER1_type -37 152 27 * 1897 176 0 0 chr12 97274495 97274797 -47007692 - AluJb SINE Alu -10 302 1 262 346 12 74 chr12 97274797 97274823 -47007666 - MER5A DNA MER1_type -162 27 1 194 318 80 34 chr12 97274899 97275075 -47007414 - L2 LINE L2 -219 3053 2870 1608 200 39 25 chr12 97275368 97275728 -47006761 - MLT1A1 LTR MaLR 0 365 1 1339 153 11 65 chr12 97275729 97276004 -47006485 + MLT1B LTR MaLR 131 390 0 22 0 0 0 chr12 97282800 97282822 -46999667 + AT_rich Low_complexity Low_complexity 1 22 0 209 301 38 60 chr12 97283624 97283757 -46998732 + L3 LINE CR1 1435 1564 -13 988 54 78 0 chr12 97283865 97283994 -46998495 - MER85 DNA T2_type 0 139 1 392 264 32 8 chr12 97285011 97285136 -46997353 - MER94 DNA DNA 0 134 7 407 262 30 18 chr12 97285548 97285716 -46996773 - MER117 DNA MER1_type -8 189 20 198 331 158 24 chr12 97285751 97285878 -46996611 - L2 LINE L2 -40 3232 3089 21 0 0 0 chr12 97286282 97286303 -46996186 + AT_rich Low_complexity Low_complexity 1 21 0 564 275 157 0 chr12 97287673 97287851 -46994638 - MIR SINE MIR -45 217 12 383 278 9 17 chr12 97288156 97288271 -46994218 + MER81 DNA DNA 1 114 0 21 36 0 0 chr12 97289274 97289302 -46993187 + AT_rich Low_complexity Low_complexity 1 28 0 1359 192 113 6 chr12 97289543 97289861 -46992628 - MLT1A1 LTR MaLR -2 363 12 233 297 40 0 chr12 97289961 97290035 -46992454 - MLT1I LTR MaLR -127 282 206 3112 109 14 6 chr12 97290130 97290624 -46991865 - L1MA3 LINE L1 -5 6300 5803 8516 175 14 7 chr12 97290624 97292354 -46990135 - L1MA3 LINE L1 -880 5266 3525 814 337 84 6 chr12 97292498 97292997 -46989492 - HERV16 LTR ERVL -1003 4651 4114 478 343 41 46 chr12 97293210 97293367 -46989122 - HERV16 LTR ERVL -1558 3927 3771 2406 166 31 0 chr12 97293367 97293782 -46988707 + MSTA LTR MaLR 1 428 0 478 343 41 46 chr12 97293782 97294250 -46988239 - HERV16 LTR ERVL -1714 3771 3276 300 161 0 0 chr12 97294253 97294309 -46988180 + MSTA LTR MaLR 1 56 -372 7217 124 6 10 chr12 97294311 97295646 -46986843 + MSTA-int LTR MaLR 191 1580 0 1760 156 82 23 chr12 97295648 97296000 -46986489 + THE1C LTR MaLR 3 375 0 540 314 69 27 chr12 97296120 97296656 -46985833 - HERV16 LTR ERVL -2503 3151 2582 924 214 56 26 chr12 97297296 97297530 -46984959 - MSTD LTR MaLR 0 396 156 1209 228 51 62 chr12 97297561 97298030 -46984459 - MER101 LTR ERV1 0 474 11 614 179 8 17 chr12 97298020 97298137 -46984352 - MSTD LTR MaLR -280 116 1 * 537 307 47 40 chr12 97298139 97298439 -46984050 - HERV16 LTR ERVL -4071 925 624 471 370 32 0 chr12 97298772 97299021 -46983468 - HERV16 LTR ERVL -4702 294 38 596 319 35 29 chr12 97299072 97299420 -46983069 - LTR16B LTR ERVL -17 447 98 422 313 80 6 chr12 97301429 97301592 -46980897 + MIR SINE MIR 75 249 -13 33 0 0 0 chr12 97301797 97301830 -46980659 + AT_rich Low_complexity Low_complexity 1 33 0 191 304 65 43 chr12 97302360 97302452 -46980037 + L2 LINE L2 3149 3242 -30 1108 232 93 117 chr12 97303193 97303953 -46978536 - L1M4 LINE L1 -765 5381 4640 434 236 7 42 chr12 97303959 97304103 -46978386 - L1M4 LINE L1 -2486 3660 3522 918 311 99 29 chr12 97304117 97304732 -46977757 + HERV16 LTR ERVL 915 1572 -3424 2944 334 57 20 chr12 97304782 97305670 -46976819 + HERV16 LTR ERVL 1687 2702 -2505 2431 174 12 9 chr12 97305670 97306101 -46976388 - MSTB1 LTR MaLR 0 432 1 2944 334 57 20 chr12 97306101 97306731 -46975758 + HERV16 LTR ERVL 2702 3307 -1900 1402 237 135 7 chr12 97306892 97307306 -46975183 + MLT1E LTR MaLR 127 593 0 593 351 22 35 chr12 97307320 97307858 -46974631 + HERV16 LTR ERVL 3327 3857 -1907 203 86 0 29 chr12 97307880 97307915 -46974574 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1560 137 67 50 chr12 97307917 97308217 -46974272 - AluSc SINE Alu -4 305 1 414 299 46 42 chr12 97308217 97308501 -46973988 + HERV16 LTR ERVL 3547 3831 -1165 26 64 0 0 chr12 97309038 97309085 -46973404 + AT_rich Low_complexity Low_complexity 1 47 0 1643 158 36 11 chr12 97309438 97309741 -46972748 - AluSx SINE Alu 0 310 1 772 141 81 0 chr12 97309958 97310107 -46972382 - L1MA4 LINE L1 -6 6294 6134 23 0 0 0 chr12 97310155 97310178 -46972311 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 97310459 97310487 -46972002 + AT_rich Low_complexity Low_complexity 1 28 0 326 219 68 0 chr12 97310487 97310560 -46971929 - MER2 DNA MER2_type -1 344 267 986 162 46 5 chr12 97310593 97310790 -46971699 - MER2 DNA MER2_type -139 206 2 589 275 78 30 chr12 97311400 97311695 -46970794 + MER110 LTR ERV1 166 474 -17 311 284 0 0 chr12 97311988 97312062 -46970427 + MIR SINE MIR 79 152 -110 550 298 65 16 chr12 97312211 97312456 -46970033 + MER110 LTR ERV1 48 304 -187 23 92 0 0 chr12 97312560 97312625 -46969864 + AT_rich Low_complexity Low_complexity 1 65 0 243 323 47 8 chr12 97312657 97312784 -46969705 + MER110 LTR ERV1 360 491 0 565 262 0 0 chr12 97312784 97312906 -46969583 - MIR SINE MIR -37 225 104 915 256 33 0 chr12 97313380 97313591 -46968898 - MER58A DNA MER1_type 0 224 7 210 345 144 14 chr12 97314491 97314630 -46967859 - L2 LINE L2 -190 3082 2926 207 69 0 0 chr12 97314816 97314845 -46967644 + (TG)n Simple_repeat Simple_repeat 2 30 0 315 345 9 9 chr12 97315015 97315125 -46967364 + L2 LINE L2 3162 3271 -1 207 245 0 0 chr12 97315616 97315665 -46966824 + MIR SINE MIR 113 161 -101 284 283 79 26 chr12 97316281 97316433 -46966056 + LTR16B LTR ERVL 305 464 0 2352 76 0 0 chr12 97316493 97316783 -46965706 + AluY SINE Alu 1 290 -21 328 380 105 0 chr12 97317323 97317494 -46964995 + MIR SINE MIR 2 190 -72 343 330 103 31 chr12 97317513 97317774 -46964715 - L2 LINE L2 -3 3310 3031 315 49 0 0 chr12 97317843 97317884 -46964605 + (CA)n Simple_repeat Simple_repeat 2 42 0 1293 186 64 27 chr12 97318005 97318333 -46964156 - MLT2C1 LTR ERVL -57 340 1 22 0 0 0 chr12 97318934 97318956 -46963533 + AT_rich Low_complexity Low_complexity 1 22 0 2391 106 0 0 chr12 97320307 97320619 -46961870 + AluSx SINE Alu 1 312 0 521 230 39 17 chr12 97320643 97320821 -46961668 + L1M4 LINE L1 4623 4804 -1342 315 348 63 36 chr12 97322308 97322529 -46959960 - L2 LINE L2 -214 3058 2832 837 208 141 70 chr12 97323709 97323942 -46958547 + MER46C DNA MER2_type 3 265 -73 1594 192 25 3 chr12 97323942 97324228 -46958261 - AluJb SINE Alu -20 292 1 837 208 141 70 chr12 97324228 97324307 -46958182 + MER46C DNA MER2_type 265 337 -1 221 160 0 20 chr12 97325523 97325573 -46956916 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 36 0 0 chr12 97329049 97329077 -46953412 + AT_rich Low_complexity Low_complexity 1 28 0 337 289 72 82 chr12 97329753 97329961 -46952528 - MIR SINE MIR -9 253 48 195 42 0 0 chr12 97329965 97329989 -46952500 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 666 311 74 50 chr12 97330699 97331037 -46951452 + MLT1I LTR MaLR 63 408 -1 255 324 29 19 chr12 97331567 97331672 -46950817 - MIR SINE MIR -101 161 56 24 53 0 0 chr12 97332551 97332589 -46949900 + AT_rich Low_complexity Low_complexity 1 38 0 1423 97 5 10 chr12 97332965 97333161 -46949328 + AluSx SINE Alu 5 199 -113 426 85 0 0 chr12 97334028 97334087 -46948402 + (CA)n Simple_repeat Simple_repeat 2 60 0 189 356 135 26 chr12 97334229 97334645 -46947844 - L2 LINE L2 0 3313 2853 234 327 75 28 chr12 97335276 97335383 -46947106 + MIR3 SINE MIR 89 200 -8 2206 113 3 0 chr12 97335579 97335888 -46946601 + AluSq SINE Alu 1 310 -3 1295 263 48 111 chr12 97335894 97336644 -46945845 + MER21B LTR ERV1 6 708 -155 1071 65 0 0 chr12 97337932 97338070 -46944419 - AluY SINE Alu -13 298 161 2547 186 73 2 chr12 97338178 97338626 -46943863 + MLT2B1 LTR ERVL 1 487 -33 609 52 0 0 chr12 97338626 97338703 -46943786 + (CA)n Simple_repeat Simple_repeat 2 78 0 2547 186 73 2 chr12 97338703 97338733 -46943756 + MLT2B1 LTR ERVL 487 513 -7 356 350 85 23 chr12 97338972 97339232 -46943257 - MLT1J LTR MaLR -234 277 2 622 191 176 32 chr12 97339313 97339501 -46942988 + MER20 DNA MER1_type 4 218 -1 294 73 0 0 chr12 97339680 97339721 -46942768 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 1942 104 3 52 chr12 97339721 97340010 -46942479 - AluSq SINE Alu -32 281 7 2194 130 8 8 chr12 97340274 97340628 -46941861 + L1PA15 LINE L1 5812 6165 0 209 304 14 0 chr12 97341629 97341698 -46940791 + CT-rich Low_complexity Low_complexity 1 70 0 236 313 0 0 chr12 97341928 97341995 -46940494 + (CAT)n Simple_repeat Simple_repeat 3 69 0 443 319 22 7 chr12 97342063 97342201 -46940288 + MIR SINE MIR 120 259 -3 398 241 19 37 chr12 97342228 97342336 -46940153 - MIR SINE MIR -138 124 19 1001 265 52 18 chr12 97343032 97343432 -46939057 - HsTC2 DNA Tc2 0 1898 1485 4606 180 33 14 chr12 97343437 97344735 -46937754 + L1MA9 LINE L1 4334 5655 -657 2740 141 50 22 chr12 97344745 97345143 -46937346 + L1MA9 LINE L1 5752 6171 -141 302 0 26 0 chr12 97345143 97345181 -46937308 + (CA)n Simple_repeat Simple_repeat 2 40 0 2740 141 50 22 chr12 97345181 97345328 -46937161 + L1MA9 LINE L1 6171 6312 0 2471 258 50 42 chr12 97345359 97345466 -46937023 + L1ME1 LINE L1 3067 3172 -2994 521 208 8 32 chr12 97345466 97345591 -46936898 + FLAM_C SINE Alu 3 124 -9 2471 258 50 42 chr12 97345591 97346487 -46936002 + L1ME1 LINE L1 3172 4059 -2107 2341 30 0 0 chr12 97346487 97346782 -46935707 + AluY SINE Alu 19 313 0 2471 258 50 42 chr12 97346782 97348747 -46933742 + L1ME1 LINE L1 4059 6157 -9 318 294 48 16 chr12 97348848 97349035 -46933454 + L1ME LINE L1 5563 5755 -366 564 168 92 37 chr12 97350567 97350716 -46931773 + MIR SINE MIR 98 255 -7 192 352 128 22 chr12 97350722 97350949 -46931540 + L2 LINE L2 2809 3059 -213 7134 41 23 2 chr12 97350976 97351851 -46930638 - L1PA5 LINE L1 -8 6146 5254 2236 106 29 32 chr12 97351920 97352296 -46930193 - THE1C LTR MaLR 0 375 1 279 235 12 59 chr12 97352327 97352412 -46930077 + L2 LINE L2 3177 3257 -15 23 33 0 0 chr12 97352556 97352586 -46929903 + AT_rich Low_complexity Low_complexity 1 30 0 237 291 0 0 chr12 97352589 97352644 -46929845 + MER5A DNA MER1_type 59 113 -76 25 75 0 0 chr12 97353699 97353752 -46928737 + AT_rich Low_complexity Low_complexity 1 53 0 264 100 0 0 chr12 97353848 97353888 -46928601 + (TG)n Simple_repeat Simple_repeat 1 40 0 27 0 0 0 chr12 97354738 97354765 -46927724 + AT_rich Low_complexity Low_complexity 1 27 0 192 261 0 0 chr12 97354946 97355011 -46927478 + C-rich Low_complexity Low_complexity 5 69 0 314 292 8 75 chr12 97355032 97355107 -46927382 - MIR3 SINE MIR -20 188 122 1760 54 5 14 chr12 97355107 97355330 -46927159 + AluY SINE Alu 85 305 -6 314 292 8 75 chr12 97355330 97355374 -46927115 - MIR3 SINE MIR -86 122 77 207 236 90 34 chr12 97355539 97355628 -46926861 + MIR SINE MIR 56 149 -113 22 56 0 0 chr12 97358427 97358463 -46924026 + AT_rich Low_complexity Low_complexity 1 36 0 312 249 164 21 chr12 97358993 97359182 -46923307 - L1ME4a LINE L1 -42 6079 5864 472 61 30 0 chr12 97360008 97360074 -46922415 - L1PA7 LINE L1 -1796 4350 4283 7053 92 12 2 chr12 97360074 97361861 -46920628 + L1PA7 LINE L1 4358 6154 0 349 271 90 23 chr12 97362042 97362219 -46920270 - L1MDa LINE L1 -4785 1295 1107 686 145 0 24 chr12 97362383 97362507 -46919982 + L1MA6 LINE L1 5779 5899 -401 324 254 111 64 chr12 97362519 97362799 -46919690 - L1MDa LINE L1 -5099 971 679 447 380 62 36 chr12 97363089 97363592 -46918897 - L1MDa LINE L1 -5543 527 12 347 269 30 8 chr12 97363619 97363753 -46918736 + L1ME LINE L1 5653 5789 -332 399 227 82 36 chr12 97363765 97363875 -46918614 - L2 LINE L2 -2048 1266 1152 7844 159 25 30 chr12 97363920 97364027 -46918462 + L1MA8 LINE L1 3836 3942 -2349 1681 187 3 13 chr12 97364027 97364337 -46918152 + AluJb SINE Alu 1 307 -5 7844 159 25 30 chr12 97364337 97366691 -46915798 + L1MA8 LINE L1 3942 6288 -3 1862 106 32 7 chr12 97366835 97367119 -46915370 - L1PA15 LINE L1 -2 6163 5873 2532 135 69 44 chr12 97367140 97367227 -46915262 - L1PA15 LINE L1 -382 5783 5700 243 88 0 0 chr12 97367227 97367261 -46915228 + (TG)n Simple_repeat Simple_repeat 2 35 0 1895 101 0 4 chr12 97367261 97367518 -46914971 + AluSg SINE Alu 37 292 -18 2532 135 69 44 chr12 97367518 97367987 -46914502 - L1PA15 LINE L1 -464 5701 5200 570 239 52 85 chr12 97368288 97368560 -46913929 - LTR67 LTR ERVL -63 494 232 22 0 0 0 chr12 97368964 97368986 -46913503 + AT_rich Low_complexity Low_complexity 1 22 0 735 85 0 0 chr12 97370001 97370107 -46912382 - AluY SINE Alu -1 310 205 958 309 103 8 chr12 97370148 97371136 -46911353 - L1ME LINE L1 -659 5505 4423 1137 276 88 9 chr12 97371199 97371673 -46910816 - L1ME3A LINE L1 -12 6158 5650 * 1356 267 36 23 chr12 97371658 97372418 -46910071 - L1ME LINE L1 -421 5724 4953 432 280 132 24 chr12 97372565 97372729 -46909760 - L1ME LINE L1 -5063 1056 854 3060 73 0 0 chr12 97372729 97373127 -46909362 + L1PA8 LINE L1 5775 6172 0 432 280 132 24 chr12 97373127 97373212 -46909277 - L1ME LINE L1 -5265 854 780 184 205 0 0 chr12 97373214 97373253 -46909236 + CT-rich Low_complexity Low_complexity 2 180 0 584 262 0 0 chr12 97373253 97373380 -46909109 - FLAM_C SINE Alu 0 170 5 336 307 121 36 chr12 97375849 97375989 -46906500 + L2 LINE L2 3153 3304 -9 300 367 84 9 chr12 97377397 97377612 -46904877 - MIR SINE MIR -31 231 1 183 162 0 0 chr12 97377740 97377777 -46904712 + (GAATG)n Simple_repeat Simple_repeat 3 39 0 222 355 29 29 chr12 97378278 97378416 -46904073 + L2 LINE L2 2720 2857 -457 201 254 51 17 chr12 97378478 97378537 -46903952 - L2 LINE L2 -61 3211 3151 192 208 57 19 chr12 97379621 97379674 -46902815 + L2 LINE L2 3255 3309 -4 21 0 0 0 chr12 97381301 97381322 -46901167 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 97381474 97381495 -46900994 + AT_rich Low_complexity Low_complexity 1 21 0 180 325 24 24 chr12 97381533 97381616 -46900873 - MIR3 SINE MIR -1 207 125 2602 116 82 54 chr12 97382521 97382986 -46899503 - LTR12 LTR ERV1 -236 478 1 1032 193 94 88 chr12 97383533 97383896 -46898593 - MLT1A1 LTR MaLR 0 365 1 311 375 84 25 chr12 97383975 97384332 -46898157 + L1ME LINE L1 4903 5280 -866 268 323 24 8 chr12 97384408 97384535 -46897954 + L1ME LINE L1 5353 5481 -683 518 329 53 22 chr12 97384546 97384774 -46897715 - MLT1I LTR MaLR -6 403 169 254 297 118 50 chr12 97384950 97385273 -46897216 + L1ME LINE L1 5537 5881 -285 24 32 0 0 chr12 97386636 97386667 -46895822 + AT_rich Low_complexity Low_complexity 1 31 0 2024 69 0 7 chr12 97386714 97386988 -46895501 + L1PA7 LINE L1 5883 6154 0 24 53 0 0 chr12 97387739 97387777 -46894712 + AT_rich Low_complexity Low_complexity 1 38 0 2611 98 22 0 chr12 97387903 97388270 -46894219 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr12 97388283 97388305 -46894184 + AT_rich Low_complexity Low_complexity 1 22 0 2183 105 16 0 chr12 97388311 97388616 -46893873 + AluY SINE Alu 1 310 -1 25 0 0 0 chr12 97388746 97388771 -46893718 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr12 97388878 97388913 -46893576 + AT_rich Low_complexity Low_complexity 1 35 0 464 391 64 23 chr12 97388957 97389346 -46893143 + L2 LINE L2 2837 3241 -31 30 0 0 0 chr12 97389731 97389761 -46892728 + AT_rich Low_complexity Low_complexity 1 30 0 256 319 69 31 chr12 97390187 97390347 -46892142 + MIR SINE MIR 8 173 -89 1414 189 82 30 chr12 97390368 97390696 -46891793 + MER2 DNA MER2_type 1 345 0 236 344 53 22 chr12 97391496 97391684 -46890805 + MIR SINE MIR 6 193 -67 354 235 114 8 chr12 97391837 97391969 -46890520 + MER103 DNA DNA 11 156 -10 2123 115 0 0 chr12 97392535 97392822 -46889667 + AluSc SINE Alu 1 287 -22 556 304 23 18 chr12 97393281 97393452 -46889037 - MIR3 SINE MIR -15 193 22 211 234 0 0 chr12 97394720 97394767 -46887722 + A-rich Low_complexity Low_complexity 1 47 0 446 227 0 0 chr12 97394846 97394921 -46887568 - MER58A DNA MER1_type -32 75 1 390 285 81 71 chr12 97395433 97395854 -46886635 + L1MEd LINE L1 511 935 -5184 347 246 134 29 chr12 97396434 97396605 -46885884 + L1MEd LINE L1 889 1077 -5042 344 275 94 84 chr12 97397037 97397346 -46885143 + L1MEd LINE L1 805 1116 -5003 2188 102 3 10 chr12 97397368 97397673 -46884816 + AluSg SINE Alu 1 303 -7 1356 112 0 29 chr12 97397764 97397970 -46884519 + AluSq SINE Alu 103 302 -11 1933 206 48 48 chr12 97397997 97398142 -46884347 + MLT1C LTR MaLR 5 149 -318 351 125 56 0 chr12 97398142 97398214 -46884275 + L1MA7 LINE L1 6216 6291 0 1933 206 48 48 chr12 97398214 97398530 -46883959 + MLT1C LTR MaLR 148 466 -1 252 239 0 0 chr12 97398557 97398624 -46883865 - MER116 DNA Mariner -8 72 6 225 356 91 0 chr12 97399443 97399575 -46882914 - L3b LINE CR1 -120 1463 1320 330 354 37 29 chr12 97400361 97400556 -46881933 - MIR SINE MIR -44 218 27 4179 134 56 56 chr12 97401050 97401876 -46880613 - LTR1B LTR ERV1 0 826 1 218 196 22 0 chr12 97401925 97401971 -46880518 + (TG)n Simple_repeat Simple_repeat 2 48 0 457 285 79 45 chr12 97402053 97402354 -46880135 + L1ME4a LINE L1 5539 5849 -272 25 65 0 0 chr12 97402502 97402548 -46879941 + AT_rich Low_complexity Low_complexity 1 46 0 191 382 29 10 chr12 97402933 97403035 -46879454 - MIR3 SINE MIR -45 163 60 21 36 0 0 chr12 97403474 97403502 -46878987 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr12 97404158 97404196 -46878293 + AT_rich Low_complexity Low_complexity 1 38 0 25 51 0 0 chr12 97404514 97404553 -46877936 + AT_rich Low_complexity Low_complexity 1 39 0 335 313 117 17 chr12 97406630 97406860 -46875629 + MLT1J LTR MaLR 79 331 -180 27 73 0 0 chr12 97408037 97408092 -46874397 + AT_rich Low_complexity Low_complexity 1 55 0 307 266 64 0 chr12 97408365 97408459 -46874030 + MLT1J2 LTR MaLR 51 150 -300 324 102 0 0 chr12 97410311 97410360 -46872129 + (TG)n Simple_repeat Simple_repeat 2 50 0 340 88 50 12 chr12 97413201 97413281 -46869208 + GA-rich Low_complexity Low_complexity 2 84 0 180 200 0 0 chr12 97413802 97413842 -46868647 + GA-rich Low_complexity Low_complexity 2 41 0 23 0 0 0 chr12 97414094 97414117 -46868372 + AT_rich Low_complexity Low_complexity 1 23 0 484 264 135 57 chr12 97414524 97414717 -46867772 - MIR SINE MIR 0 262 55 418 219 42 0 chr12 97415479 97415575 -46866914 + MLT2E LTR ERVL 2 101 -527 530 273 7 35 chr12 97415801 97416132 -46866357 + MLT2E LTR ERVL 187 628 0 4410 152 15 7 chr12 97416154 97417311 -46865178 + L1PA16 LINE L1 4823 5986 -180 * 14125 42 9 10 chr12 97417310 97419113 -46863376 - L1PA5 LINE L1 -753 5393 3592 6008 49 0 34 chr12 97419113 97419430 -46863059 + L1PA5 LINE L1 5393 5719 -435 2413 63 0 19 chr12 97419430 97419746 -46862743 - AluY SINE Alu -1 310 1 6008 49 0 34 chr12 97419746 97420216 -46862273 + L1PA5 LINE L1 5719 6154 0 1111 146 22 0 chr12 97420228 97420413 -46862076 + L1PA16 LINE L1 5968 6156 -10 254 329 70 35 chr12 97420538 97420766 -46861723 + MLT1-int LTR MaLR 306 541 -830 351 159 80 80 chr12 97420997 97421085 -46861404 + MLT1H1 LTR MaLR 464 538 -17 408 247 267 7 chr12 97421387 97421533 -46860956 + MIR SINE MIR 79 262 0 528 356 7 0 chr12 97422041 97422190 -46860299 - L2 LINE L2 -2 3270 3121 409 351 127 40 chr12 97422408 97422961 -46859528 - L2 LINE L2 -449 2865 2265 249 350 58 10 chr12 97424482 97424585 -46857904 + MIR SINE MIR 79 186 -76 1450 173 121 4 chr12 97424657 97424929 -46857560 + AluSx SINE Alu 1 304 -8 21 71 0 0 chr12 97425045 97425087 -46857402 + AT_rich Low_complexity Low_complexity 1 42 0 521 347 21 0 chr12 97425216 97425406 -46857083 - MIR SINE MIR -55 207 14 491 237 0 17 chr12 97426023 97426141 -46856348 + MER33 DNA MER1_type 1 116 -208 29 0 0 0 chr12 97426153 97426182 -46856307 + AT_rich Low_complexity Low_complexity 1 29 0 1100 205 56 73 chr12 97426186 97426719 -46855770 - LTR48B LTR ERV1 -30 614 5 2949 219 68 27 chr12 97426749 97427071 -46855418 - L1ME1 LINE L1 -4 6162 5855 2043 170 11 16 chr12 97427071 97427448 -46855041 + THE1C LTR MaLR 1 375 0 2949 219 68 27 chr12 97427448 97428309 -46854180 - L1ME1 LINE L1 -311 5855 4936 229 26 26 26 chr12 97428616 97428655 -46853834 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 237 247 130 13 chr12 97428983 97429060 -46853429 - MIR3 SINE MIR -31 177 92 209 224 17 0 chr12 97431495 97431553 -46850936 + (TATATG)n Simple_repeat Simple_repeat 3 61 0 264 262 36 0 chr12 97431583 97431751 -46850738 + (TA)n Simple_repeat Simple_repeat 2 175 0 2011 282 59 14 chr12 97431758 97432726 -46849763 - L1ME1 LINE L1 -2287 3859 2849 248 284 209 22 chr12 97432955 97433089 -46849400 + MIR3 SINE MIR 10 168 -40 958 270 113 46 chr12 97434088 97434591 -46847898 + L2 LINE L2 1751 2287 -1027 935 209 194 39 chr12 97434739 97435069 -46847420 + MLT1B LTR MaLR 4 384 -6 244 314 160 6 chr12 97435099 97435255 -46847234 + L2 LINE L2 3119 3298 -15 293 250 23 29 chr12 97435400 97435624 -46846865 + (TA)n Simple_repeat Simple_repeat 1 222 0 320 178 14 0 chr12 97435635 97435708 -46846781 + (TA)n Simple_repeat Simple_repeat 1 74 0 409 154 0 56 chr12 97435731 97435874 -46846615 + (TA)n Simple_repeat Simple_repeat 1 135 0 320 139 51 0 chr12 97435939 97436018 -46846471 + (TA)n Simple_repeat Simple_repeat 1 83 0 183 343 120 0 chr12 97436313 97436421 -46846068 + L2 LINE L2 3185 3305 -8 214 195 0 0 chr12 97436578 97436619 -46845870 + T-rich Low_complexity Low_complexity 1 41 0 238 306 153 31 chr12 97437080 97437178 -46845311 + MIR SINE MIR 58 167 -95 1070 194 51 145 chr12 97437751 97438200 -46844289 - MLT1E2 LTR MaLR -219 407 1 740 293 82 43 chr12 97438233 97438772 -46843717 + L1MC4a LINE L1 5407 5966 -1842 6156 95 21 3 chr12 97439223 97440880 -46841609 + L1PA13 LINE L1 4516 6161 -2 2724 131 12 12 chr12 97441054 97441482 -46841007 - MSTA LTR MaLR 0 428 1 3677 132 22 3 chr12 97442336 97443201 -46839288 + L1P5 LINE L1 4912 5791 -360 38 0 0 0 chr12 97443570 97443608 -46838881 + AT_rich Low_complexity Low_complexity 1 38 0 288 315 65 0 chr12 97443648 97443740 -46838749 - L2 LINE L2 -8 3305 3208 296 254 0 45 chr12 97443838 97443905 -46838584 + L2 LINE L2 3209 3272 0 219 243 40 0 chr12 97444305 97444379 -46838110 + (TA)n Simple_repeat Simple_repeat 2 78 0 277 384 89 7 chr12 97445839 97445985 -46836504 - L2 LINE L2 -5 3267 3110 2367 159 38 44 chr12 97446542 97447038 -46835451 + L1MC1 LINE L1 5841 6333 0 428 267 48 14 chr12 97448755 97448901 -46833588 - MLT1J1 LTR MaLR -291 155 5 632 320 79 51 chr12 97449844 97450398 -46832091 + L2 LINE L2 2737 3309 -4 434 248 35 7 chr12 97450598 97450739 -46831750 - L1MEc LINE L1 -4515 1881 1737 866 89 65 0 chr12 97450758 97450882 -46831607 - AluY SINE Alu -179 132 1 697 290 84 12 chr12 97450885 97451104 -46831385 - L1MEc LINE L1 -4655 1741 1539 240 35 0 0 chr12 97451104 97451133 -46831356 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 697 290 84 12 chr12 97451133 97451340 -46831149 - L1MEc LINE L1 -4857 1539 1284 755 191 24 24 chr12 97451396 97451605 -46830884 + L1MA4 LINE L1 6092 6300 0 1824 298 24 13 chr12 97451635 97452263 -46830226 - L1MEc LINE L1 -5648 748 114 373 261 56 42 chr12 97452850 97452992 -46829497 - ERVL LTR ERVL -1584 4180 4037 2162 110 0 3 chr12 97453612 97453903 -46828586 - AluSq SINE Alu -19 294 5 2324 73 10 3 chr12 97453935 97454249 -46828240 - L1PA7 LINE L1 0 6154 5839 1278 264 68 44 chr12 97455942 97456585 -46825904 - MLT1E3 LTR MaLR -1 623 1 25 31 0 0 chr12 97457267 97457299 -46825190 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr12 97457307 97457334 -46825155 + AT_rich Low_complexity Low_complexity 1 27 0 779 152 16 0 chr12 97457806 97457931 -46824558 + MER47A DNA MER2_type 2 128 -238 1026 160 6 0 chr12 97457931 97458100 -46824389 + L1PA12 LINE L1 52 221 -7360 297 366 0 0 chr12 97458216 97458298 -46824191 - L2 LINE L2 -31 3282 3201 228 319 66 11 chr12 97458515 97458606 -46823883 + L2 LINE L2 3172 3267 -5 22 0 0 0 chr12 97458735 97458757 -46823732 + AT_rich Low_complexity Low_complexity 1 22 0 340 348 105 19 chr12 97458997 97459481 -46823008 + L2 LINE L2 2532 3060 -212 402 162 27 0 chr12 97460027 97460101 -46822388 + MADE1 DNA Mariner 5 80 0 292 203 68 27 chr12 97460132 97460206 -46822283 - MIR SINE MIR -180 82 6 717 281 68 70 chr12 97460241 97460852 -46821637 - L2 LINE L2 -5 3308 2700 1734 146 45 3 chr12 97461041 97461328 -46821161 + AluSx SINE Alu 6 304 -8 25 31 0 0 chr12 97461360 97461392 -46821097 + AT_rich Low_complexity Low_complexity 1 32 0 621 318 54 21 chr12 97461890 97462132 -46820357 - MIR SINE MIR -1 261 12 590 321 50 29 chr12 97462292 97462532 -46819957 + MIR SINE MIR 15 259 -3 258 148 0 0 chr12 97462824 97462878 -46819611 + (TC)n Simple_repeat Simple_repeat 1 54 0 369 0 0 0 chr12 97462878 97462919 -46819570 + (TG)n Simple_repeat Simple_repeat 2 42 0 453 325 116 59 chr12 97462980 97463487 -46819002 + L3 LINE CR1 928 1463 -114 11559 168 12 0 chr12 97463587 97465378 -46817111 + L1PA12 LINE L1 193 2004 -5577 1793 253 105 33 chr12 97465376 97466190 -46816299 + L1PA13 LINE L1 339 1258 -5529 * 13179 186 64 13 chr12 97466193 97469425 -46813064 + L1PA13 LINE L1 1396 4802 -1995 1127 89 47 6 chr12 97469535 97469704 -46812785 + Tigger5 DNA MER2_type 2098 2273 -50 315 258 79 56 chr12 97469877 97470055 -46812434 + L1ME4a LINE L1 5839 6020 -101 1786 177 27 9 chr12 97470197 97470531 -46811958 - MER50 LTR ERV1 -23 711 372 3170 138 12 4 chr12 97470634 97471127 -46811362 + MER50 LTR ERV1 215 711 -23 1426 177 49 35 chr12 97471671 97471959 -46810530 + AluJo SINE Alu 1 292 -20 3167 83 4 33 chr12 97472655 97473112 -46809377 - MLT2A1 LTR ERVL 0 444 1 517 295 140 5 chr12 97473200 97473400 -46809089 - MIR SINE MIR 0 262 36 341 248 99 8 chr12 97474065 97474127 -46808362 - MIR SINE MIR -30 232 177 2396 83 0 0 chr12 97474127 97474427 -46808062 + AluSg SINE Alu 1 300 -10 341 248 99 8 chr12 97474427 97474485 -46808004 - MIR SINE MIR -85 177 101 432 284 46 24 chr12 97474667 97474869 -46807620 - MIR SINE MIR -51 211 10 470 224 12 12 chr12 97475271 97475441 -46807048 + GA-rich Low_complexity Low_complexity 1 170 0 207 133 0 0 chr12 97476865 97476910 -46805579 + (TG)n Simple_repeat Simple_repeat 2 46 0 25 31 0 0 chr12 97477023 97477055 -46805434 + AT_rich Low_complexity Low_complexity 1 32 0 1108 230 148 19 chr12 97477353 97477832 -46804657 - L1M4 LINE L1 -3463 2683 2143 2233 257 38 15 chr12 97477849 97478510 -46803979 - L1MC4a LINE L1 -1 7807 7132 662 307 78 16 chr12 97478624 97478943 -46803546 + MERVL LTR ERVL 3120 3458 -2027 703 381 0 3 chr12 97479443 97479755 -46802734 + MERVL LTR ERVL 4054 4364 -1400 1309 182 94 31 chr12 97479772 97480091 -46802398 - MLT1D LTR MaLR -9 496 158 232 305 0 39 chr12 97480188 97480316 -46802173 - L1MC4a LINE L1 -2276 5532 5410 22 0 0 0 chr12 97480369 97480391 -46802098 + AT_rich Low_complexity Low_complexity 1 22 0 213 121 0 0 chr12 97480741 97480774 -46801715 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 21 57 0 0 chr12 97480787 97480822 -46801667 + AT_rich Low_complexity Low_complexity 1 35 0 21374 132 13 84 chr12 97481949 97485771 -46796718 + L1P LINE L1 2 3481 -2665 228 35 0 0 chr12 97485771 97485800 -46796689 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21374 132 13 84 chr12 97485800 97486318 -46796171 + L1P LINE L1 3481 4034 -2112 279 173 19 0 chr12 97486318 97486370 -46796119 + Tigger5 DNA MER2_type 2271 2323 0 846 251 11 5 chr12 97487300 97487491 -46794998 - MIR SINE MIR -44 218 27 264 149 0 0 chr12 97487559 97487606 -46794883 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 2404 175 70 16 chr12 97487606 97488142 -46794347 - MER82 DNA MER2_type 0 653 21 225 108 0 0 chr12 97488155 97488192 -46794297 + (TA)n Simple_repeat Simple_repeat 2 38 0 245 29 0 29 chr12 97489293 97489328 -46793161 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 366 61 0 0 chr12 97490588 97490637 -46791852 + (CA)n Simple_repeat Simple_repeat 2 50 0 188 167 21 0 chr12 97490638 97490686 -46791803 + (CCA)n Simple_repeat Simple_repeat 2 50 0 409 354 55 6 chr12 97491819 97492000 -46790489 + MIR SINE MIR 45 234 -28 213 233 0 0 chr12 97492000 97492043 -46790446 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 306 311 23 124 chr12 97493350 97493447 -46789042 - L2 LINE L2 -1 3312 3207 2263 101 3 19 chr12 97493447 97493764 -46788725 + AluSx SINE Alu 1 312 0 306 311 23 124 chr12 97493764 97493889 -46788600 - L2 LINE L2 -106 3207 3136 435 62 0 16 chr12 97493889 97493981 -46788508 + L1PA7 LINE L1 6081 6171 0 306 311 23 124 chr12 97493981 97494110 -46788379 - L2 LINE L2 -177 3136 2995 201 282 204 19 chr12 97494165 97494268 -46788221 + MIR SINE MIR 61 182 -80 1685 228 34 30 chr12 97495506 97495944 -46786545 - L1ME2 LINE L1 -11 6153 5714 233 64 0 0 chr12 97495995 97496042 -46786447 - LTR66 LTR ERVL -171 439 393 602 243 203 0 chr12 97496073 97496295 -46786194 - L1ME2 LINE L1 -473 5691 5425 243 227 0 0 chr12 97498242 97498308 -46784181 + (CA)n Simple_repeat Simple_repeat 1 66 0 323 292 23 8 chr12 97498537 97498667 -46783822 + (TA)n Simple_repeat Simple_repeat 2 133 0 335 335 56 12 chr12 97498868 97499029 -46783460 + MLT1K LTR MaLR 91 258 -330 228 246 0 0 chr12 97499051 97499112 -46783377 + MLT1K LTR MaLR 365 425 -163 3526 144 73 20 chr12 97499841 97500554 -46781935 - Tigger3(Golem) DNA MER2_type -1 3028 2278 538 243 9 0 chr12 97500546 97500653 -46781836 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 215 213 0 0 chr12 97502479 97502526 -46779963 + (CA)n Simple_repeat Simple_repeat 1 47 0 27 49 0 0 chr12 97503691 97503732 -46778757 + AT_rich Low_complexity Low_complexity 1 41 0 2084 133 3 7 chr12 97503846 97504147 -46778342 + AluSq SINE Alu 1 300 -13 258 131 61 0 chr12 97504177 97504276 -46778213 + (TA)n Simple_repeat Simple_repeat 1 105 0 1243 282 91 22 chr12 97504339 97504886 -46777603 + L1ME3A LINE L1 5378 5977 -193 1761 176 0 23 chr12 97504886 97505193 -46777296 + AluJo SINE Alu 1 300 -12 1243 282 91 22 chr12 97505193 97505283 -46777206 + L1ME3A LINE L1 5977 6059 -111 282 271 81 97 chr12 97505535 97505793 -46776696 - L2 LINE L2 0 3272 3019 421 289 65 60 chr12 97506401 97506602 -46775887 - L2 LINE L2 -6 3307 3106 367 341 91 9 chr12 97507022 97507242 -46775247 + MIR SINE MIR 20 257 -5 26 88 0 0 chr12 97507849 97507917 -46774572 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr12 97508058 97508079 -46774410 + AT_rich Low_complexity Low_complexity 1 21 0 337 185 0 15 chr12 97509274 97509339 -46773150 - LTR67 LTR ERVL -3 554 491 1389 119 75 79 chr12 97509346 97509624 -46772865 + AluSq SINE Alu 1 277 -36 1016 282 123 55 chr12 97510726 97511746 -46770743 - L2 LINE L2 0 3313 2222 591 112 0 0 chr12 97511770 97511859 -46770630 + (TCCA)n Simple_repeat Simple_repeat 1 89 0 221 143 0 0 chr12 97512564 97512599 -46769890 + (GAAA)n Simple_repeat Simple_repeat 4 38 0 738 153 6 33 chr12 97512599 97512782 -46769707 + GA-rich Low_complexity Low_complexity 3 180 0 581 279 39 6 chr12 97513490 97513669 -46768820 + MIR SINE MIR 1 185 -77 1860 155 3 0 chr12 97513687 97513971 -46768518 - AluSx SINE Alu -27 285 1 21 0 0 0 chr12 97513999 97514020 -46768469 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr12 97514176 97514215 -46768274 + (CA)n Simple_repeat Simple_repeat 2 40 0 2804 178 38 31 chr12 97515086 97515642 -46766847 - MER68 LTR ERV1 0 562 3 355 357 55 22 chr12 97516077 97516349 -46766140 + L2 LINE L2 2444 2724 -590 432 284 26 138 chr12 97516475 97516669 -46765820 + L2 LINE L2 2932 3054 -259 306 106 0 0 chr12 97516669 97516716 -46765773 + (CA)n Simple_repeat Simple_repeat 1 47 0 432 284 26 138 chr12 97516716 97516947 -46765542 + L2 LINE L2 3054 3309 -4 2409 74 0 3 chr12 97517806 97518117 -46764372 + AluY SINE Alu 1 310 -1 1469 235 68 68 chr12 97518200 97518689 -46763800 + MER77 LTR ERV1 117 605 0 6187 151 22 11 chr12 97519403 97520539 -46761950 - L1MC1 LINE L1 -6 6327 5185 262 239 72 120 chr12 97521428 97521595 -46760894 + L2 LINE L2 3155 3313 0 617 278 66 21 chr12 97523570 97523811 -46758678 - MIR SINE MIR -2 260 9 2083 102 37 3 chr12 97523811 97524105 -46758384 - AluSx SINE Alu -8 304 1 649 272 6 6 chr12 97524305 97524463 -46758026 + MLT1I LTR MaLR 252 409 0 8466 59 3 1 chr12 97724530 97725626 -46556863 - L1P LINE L1 -1379 4767 3670 183 234 21 0 chr12 97726606 97726653 -46555836 + MIR SINE MIR 75 122 -140 458 192 176 8 chr12 97727136 97727261 -46555228 + MER5A DNA MER1_type 5 150 -39 1816 130 7 14 chr12 97727262 97727554 -46554935 + AluSc SINE Alu 1 290 -19 438 293 76 15 chr12 97727647 97727845 -46554644 - MIR SINE MIR -50 212 3 5847 111 25 6 chr12 97728577 97730352 -46552137 + L1PA11 LINE L1 4392 6174 0 675 250 65 75 chr12 97731480 97731925 -46550564 + MLT1H LTR MaLR 117 549 0 487 329 89 9 chr12 97732175 97732388 -46550101 - MIR SINE MIR -2 260 31 687 286 91 5 chr12 97733650 97733870 -46548619 + L2 LINE L2 3075 3313 0 284 250 40 0 chr12 97734136 97734212 -46548277 + CT-rich Low_complexity Low_complexity 2 80 0 215 318 45 78 chr12 97734555 97734709 -46547780 - MIR3 SINE MIR -5 203 55 548 324 128 32 chr12 97735324 97736078 -46546411 + L2 LINE L2 2457 3283 -30 3411 128 57 28 chr12 97736416 97737049 -46545440 - L1MC1 LINE L1 -9 6324 5674 228 351 70 29 chr12 97737121 97737292 -46545197 + MIR SINE MIR 30 207 -55 28 29 0 0 chr12 97737402 97737437 -46545052 + AT_rich Low_complexity Low_complexity 1 35 0 645 264 130 9 chr12 97737487 97737703 -46544786 - MIR SINE MIR -2 260 19 22 56 0 0 chr12 97737709 97737745 -46544744 + AT_rich Low_complexity Low_complexity 1 36 0 234 0 0 0 chr12 97738865 97738891 -46543598 + (TA)n Simple_repeat Simple_repeat 2 27 0 369 307 22 22 chr12 97739247 97739384 -46543105 - MER5A DNA MER1_type -3 186 50 256 350 68 34 chr12 97739494 97739671 -46542818 - MIR SINE MIR -74 188 6 305 111 0 0 chr12 97739897 97739942 -46542547 + MADE1 DNA Mariner 5 49 -31 337 321 22 22 chr12 97740335 97740472 -46542017 - MER5A DNA MER1_type -3 186 50 256 350 68 34 chr12 97740583 97740760 -46541729 - MIR SINE MIR -74 188 6 369 96 0 0 chr12 97740983 97741035 -46541454 + MADE1 DNA Mariner 2 53 -27 842 266 11 35 chr12 97741049 97741331 -46541158 + MLT1E3 LTR MaLR 350 624 0 375 293 14 70 chr12 97741331 97741546 -46540943 - L2 LINE L2 -27 3286 3084 853 173 82 39 chr12 97743336 97743544 -46538945 - MER20 DNA MER1_type -1 218 2 2556 180 20 14 chr12 97743615 97744110 -46538379 + MER34 LTR ERV1 45 542 0 568 267 40 34 chr12 97744119 97744295 -46538194 - MIR SINE MIR -47 215 39 221 353 122 0 chr12 97744798 97744937 -46537552 + MIR3 SINE MIR 49 204 -4 1584 226 70 64 chr12 97746140 97746457 -46536032 - MLT1D LTR MaLR -2 503 189 468 89 0 38 chr12 97746457 97746536 -46535953 + L1PA8 LINE L1 6097 6172 0 1584 226 70 64 chr12 97746536 97746555 -46535934 - MLT1D LTR MaLR -316 189 172 1881 122 13 40 chr12 97746555 97746897 -46535592 + AluSq SINE Alu 1 313 0 1584 226 70 64 chr12 97746897 97747059 -46535430 - MLT1D LTR MaLR -333 172 1 290 299 142 16 chr12 97747480 97747607 -46534882 - MIR SINE MIR -2 260 118 2364 109 0 0 chr12 97747755 97748067 -46534422 + AluSx SINE Alu 1 312 0 327 304 95 7 chr12 97748360 97748508 -46533981 + MIR SINE MIR 20 180 -82 479 299 142 5 chr12 97749707 97749911 -46532578 - MIR SINE MIR -6 256 25 2401 132 11 11 chr12 97749971 97750351 -46532138 + Tigger2a DNA MER2_type 1 380 -54 1585 310 70 15 chr12 97752143 97753078 -46529411 + L2 LINE L2 2323 3313 0 196 351 23 30 chr12 97753441 97753572 -46528917 + MIR SINE MIR 124 253 -9 2696 201 134 143 chr12 97753723 97754353 -46528136 + L1MD3 LINE L1 6692 7326 -669 397 254 70 9 chr12 97754353 97754467 -46528022 + MLT1F1 LTR MaLR 1 121 -446 2696 201 134 143 chr12 97754467 97755007 -46527482 + L1MD3 LINE L1 7326 7963 -32 22 56 0 0 chr12 97755074 97755110 -46527379 + AT_rich Low_complexity Low_complexity 1 36 0 2153 249 40 17 chr12 97755278 97755801 -46526688 + MLT1F LTR MaLR 8 542 0 204 300 62 12 chr12 97756327 97756407 -46526082 + MIR SINE MIR 64 147 -115 867 199 32 59 chr12 97758367 97758588 -46523901 + MER58B DNA MER1_type 123 337 -4 22 0 0 0 chr12 97758970 97758992 -46523497 + AT_rich Low_complexity Low_complexity 1 22 0 925 299 108 26 chr12 97759505 97760114 -46522375 - L2 LINE L2 0 3313 2635 261 283 81 110 chr12 97760229 97760402 -46522087 + MLT1H1 LTR MaLR 64 231 -324 249 214 29 0 chr12 97760580 97760650 -46521839 + MLT1G LTR MaLR 512 583 -7 267 359 14 14 chr12 97760878 97761023 -46521466 + MLT1-int LTR MaLR 397 541 -830 2908 175 24 6 chr12 97762279 97762827 -46519662 - L1MC2 LINE L1 -308 6036 5479 1827 241 47 45 chr12 97762825 97763305 -46519184 - L1MC2 LINE L1 -1883 4263 3780 * 1486 233 3 3 chr12 97763305 97763614 -46518875 - AluJb SINE Alu -1 311 3 1827 241 47 45 chr12 97763614 97763735 -46518754 - L1MC2 LINE L1 -2366 3780 3661 1367 282 130 56 chr12 97763769 97765193 -46517296 - HAL1 LINE L1 -975 1532 4 273 356 77 0 chr12 97765761 97765865 -46516624 + MER91A DNA MER1_type 63 174 -22 1541 72 40 48 chr12 97768262 97768512 -46513977 - L1PA11 LINE L1 -5 6169 5922 1036 213 67 22 chr12 97769320 97769738 -46512751 + MLT1D LTR MaLR 3 505 0 374 261 50 17 chr12 97770137 97770256 -46512233 - MIR SINE MIR -67 195 73 2371 121 5 16 chr12 97770403 97770782 -46511707 + THE1C LTR MaLR 1 375 0 270 298 88 61 chr12 97771855 97772063 -46510426 - MIR SINE MIR -50 212 2 1023 149 0 13 chr12 97772366 97772520 -46509969 - AluSx SINE Alu -158 154 3 1174 65 0 0 chr12 97772989 97773144 -46509345 - AluY SINE Alu -1 310 156 2052 109 0 64 chr12 97773457 97773787 -46508702 - AluY SINE Alu -2 309 1 262 368 114 5 chr12 97773806 97774007 -46508482 - L2 LINE L2 -173 3099 2877 261 278 113 52 chr12 97774031 97774128 -46508361 - L2 LINE L2 -3 3310 3208 283 327 91 55 chr12 97774461 97774822 -46507667 - MLT1J LTR MaLR -113 398 25 3926 198 25 11 chr12 97774927 97775417 -46507072 + L1M4c LINE L1 22 528 -5856 435 83 0 0 chr12 97775417 97775477 -46507012 + (CCCCG)n Simple_repeat Simple_repeat 3 62 0 3926 198 25 11 chr12 97775477 97775739 -46506750 + L1M4c LINE L1 528 785 -5599 1267 173 76 21 chr12 97775752 97776177 -46506312 + L1M4c LINE L1 2154 2600 -3782 6836 231 15 5 chr12 97776188 97777817 -46504672 - L1P4 LINE L1 -1106 5040 3396 3091 140 69 0 chr12 97777818 97778517 -46503972 + L1P4 LINE L1 5052 5791 -375 232 120 120 0 chr12 97778535 97778635 -46503854 + (TATAA)n Simple_repeat Simple_repeat 5 116 0 381 102 0 0 chr12 97778660 97778723 -46503766 - L1PA8A LINE L1 -358 5773 5711 387 212 0 0 chr12 97778724 97778809 -46503680 + (CATA)n Simple_repeat Simple_repeat 2 86 0 763 143 234 11 chr12 97778873 97779048 -46503441 + Tigger1 DNA MER2_type 2205 2418 0 286 268 0 41 chr12 97779054 97779151 -46503338 - MIR SINE MIR -70 192 100 194 0 39 0 chr12 97779503 97779529 -46502960 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 216 97 0 0 chr12 97779528 97779559 -46502930 + (TG)n Simple_repeat Simple_repeat 2 32 0 26 50 0 0 chr12 97779829 97779869 -46502620 + AT_rich Low_complexity Low_complexity 1 40 0 1333 225 92 35 chr12 97780405 97780924 -46501565 - MER44D DNA MER2_type -1 604 1 196 281 34 45 chr12 97781152 97781241 -46501248 - L2 LINE L2 -1874 1440 1353 3895 146 10 13 chr12 97782908 97783591 -46498898 + L1MA5 LINE L1 5620 6300 0 2393 185 50 8 chr12 97784058 97784556 -46497933 - LTR53 LTR ERVL 0 519 1 2233 101 0 3 chr12 97785572 97785870 -46496619 - AluSg SINE Alu -13 297 1 942 326 145 27 chr12 97785977 97786903 -46495586 + L2 LINE L2 2267 3313 0 1607 191 14 11 chr12 97787274 97787552 -46494937 - AluJb SINE Alu -31 281 3 3262 252 55 7 chr12 97787554 97788565 -46493924 + L1M4 LINE L1 4025 5084 -1062 3155 79 2 0 chr12 97788702 97789119 -46493370 - L1PA7 LINE L1 -3 6151 5734 1885 297 43 31 chr12 97789558 97790341 -46492148 + HERV16 LTR ERVL 1454 2219 -2777 748 310 50 46 chr12 97790340 97790839 -46491650 + HERV16 LTR ERVL 2498 2993 -2661 * 2410 143 11 8 chr12 97790839 97791211 -46491278 - THE1C LTR MaLR -2 373 1 9716 111 51 34 chr12 97791211 97792764 -46489725 - THE1C-int LTR MaLR 0 1580 1 2681 109 0 5 chr12 97792764 97793141 -46489348 - THE1C LTR MaLR 0 375 1 748 310 50 46 chr12 97793141 97793359 -46489130 + HERV16 LTR ERVL 2992 3309 -2345 492 167 0 11 chr12 97793387 97793477 -46489012 - MER39 LTR ERV1 -618 89 1 586 339 70 64 chr12 97793648 97794179 -46488310 - HAL1 LINE L1 -838 1669 1136 280 254 102 0 chr12 97794204 97794322 -46488167 - L1MDa LINE L1 -5124 1416 1287 2030 123 0 3 chr12 97794897 97795228 -46487261 + AluSq SINE Alu 1 330 0 1932 153 84 25 chr12 97795657 97796186 -46486303 - MLT2A2 LTR ERVL 0 554 1 380 351 15 15 chr12 97796796 97796927 -46485562 - MIR3 SINE MIR -33 175 45 535 333 39 22 chr12 97798208 97798439 -46484050 - MIR SINE MIR -26 236 2 265 221 139 35 chr12 97800249 97800383 -46482106 + L1ME LINE L1 5502 5661 -460 268 188 0 0 chr12 97800460 97800508 -46481981 - MER91 DNA MER1_type 0 196 149 311 256 62 47 chr12 97800618 97800747 -46481742 + MIR SINE MIR 122 252 -10 1799 171 0 16 chr12 97800828 97801133 -46481356 + AluJo SINE Alu 11 310 -2 640 319 51 8 chr12 97801251 97801486 -46481003 - MIR SINE MIR 0 262 18 526 139 128 0 chr12 97801542 97801628 -46480861 - AluJ/FLAM SINE Alu -215 97 1 25277 30 3 0 chr12 97801695 97805517 -46476972 - L1PA3 LINE L1 -1 6154 2325 23 54 0 0 chr12 97805710 97805747 -46476742 + AT_rich Low_complexity Low_complexity 1 37 0 2521 65 0 0 chr12 97806062 97806368 -46476121 - AluY SINE Alu -5 306 1 366 282 174 15 chr12 97807075 97807270 -46475219 - MIR SINE MIR -14 248 23 554 220 121 33 chr12 97807272 97807455 -46475034 - MLT1A1 LTR MaLR -118 247 22 348 363 38 0 chr12 97807502 97807662 -46474827 + L2 LINE L2 3148 3313 0 193 331 74 25 chr12 97807829 97807950 -46474539 - L2 LINE L2 -28 3285 3159 1936 140 7 0 chr12 97808098 97808384 -46474105 + AluSx SINE Alu 1 288 -24 2443 284 117 19 chr12 97808912 97810097 -46472392 - L2 LINE L2 -102 3211 1912 260 187 0 27 chr12 97810583 97810658 -46471831 + (TATATG)n Simple_repeat Simple_repeat 1 73 0 325 319 76 0 chr12 97810790 97810909 -46471580 + MIR SINE MIR 20 147 -115 288 268 65 36 chr12 97812124 97812262 -46470227 - MIR3 SINE MIR -6 202 61 377 298 51 22 chr12 97812450 97812628 -46469861 + L2 LINE L2 3127 3309 -4 1130 107 0 6 chr12 97813200 97813378 -46469111 + (GGAA)n Simple_repeat Simple_repeat 1 177 0 186 229 12 24 chr12 97813425 97813508 -46468981 + GA-rich Low_complexity Low_complexity 2 83 0 418 316 34 25 chr12 97813883 97814082 -46468407 - MIR SINE MIR -51 211 10 286 275 88 0 chr12 97814955 97815046 -46467443 + MIR SINE MIR 82 180 -82 22 70 0 0 chr12 97815260 97815303 -46467186 + AT_rich Low_complexity Low_complexity 1 43 0 323 175 63 0 chr12 97815303 97815366 -46467123 - MIR SINE MIR -105 157 91 529 330 48 18 chr12 97816071 97816298 -46466191 + MIR SINE MIR 15 248 -14 23 33 0 0 chr12 97817770 97817800 -46464689 + AT_rich Low_complexity Low_complexity 1 30 0 1946 250 38 62 chr12 97818713 97819394 -46463095 + MER21B LTR ERV1 147 811 -52 27 87 0 0 chr12 97820066 97820135 -46462354 + AT_rich Low_complexity Low_complexity 1 69 0 2118 145 0 0 chr12 97821074 97821385 -46461104 + AluSx SINE Alu 1 311 -1 479 238 21 3 chr12 97821444 97821566 -46460923 + MER2 DNA MER2_type 1 133 -106 921 253 40 77 chr12 97821630 97822006 -46460483 - MSTD LTR MaLR -32 364 3 477 0 0 0 chr12 97822156 97822209 -46460280 + (TAG)n Simple_repeat Simple_repeat 1 53 0 1101 172 0 0 chr12 97822961 97823141 -46459348 + ERVL-B1 LTR ERVL 5217 5396 -368 * 1342 167 0 29 chr12 97823140 97823386 -46459103 + ERVL-B1 LTR ERVL 5519 5757 -7 1058 199 214 95 chr12 97823388 97823851 -46458638 + MLT2B1 LTR ERVL 3 520 0 258 32 0 0 chr12 97826649 97826680 -46455809 + (CA)n Simple_repeat Simple_repeat 1 31 0 3868 63 2 0 chr12 97827000 97827493 -46454996 - L1PA7 LINE L1 -291 5863 5370 1962 104 0 24 chr12 97827493 97827788 -46454701 + L1PA7 LINE L1 5864 6153 -1 449 319 139 40 chr12 97828656 97829193 -46453296 + L2 LINE L2 2553 3132 -181 221 321 60 0 chr12 97829225 97829309 -46453180 + L2 LINE L2 3218 3306 -7 227 286 11 77 chr12 97829329 97829387 -46453102 + L2 LINE L2 3184 3235 -37 2091 204 29 5 chr12 97829387 97829803 -46452686 - MSTB LTR MaLR 0 426 1 227 286 11 77 chr12 97829803 97829835 -46452654 + L2 LINE L2 3235 3268 -4 2052 197 33 20 chr12 97829876 97830333 -46452156 + MLT1C LTR MaLR 3 465 -2 526 280 48 21 chr12 97830437 97830623 -46451866 + MIR SINE MIR 72 262 0 257 269 177 50 chr12 97830836 97830977 -46451512 + L3 LINE CR1 1347 1505 -72 1186 253 89 13 chr12 97831026 97831398 -46451091 + LTR16A LTR ERVL 21 420 -30 394 291 141 33 chr12 97832276 97832489 -46450000 + MIR SINE MIR 15 250 -12 229 377 0 0 chr12 97832499 97832576 -46449913 - MIR SINE MIR -119 143 67 1435 222 19 15 chr12 97833908 97834301 -46448188 + MLT2D LTR ERVL 3 394 -70 231 36 0 0 chr12 97834320 97834348 -46448141 + (TA)n Simple_repeat Simple_repeat 2 29 0 201 227 64 0 chr12 97834391 97834501 -46447988 + (TA)n Simple_repeat Simple_repeat 1 117 0 180 305 114 71 chr12 97834970 97835337 -46447152 + L2 LINE L2 2806 3188 -125 468 276 16 8 chr12 97836389 97836512 -46445977 - MER5A DNA MER1_type -2 187 64 364 380 64 29 chr12 97839222 97839630 -46442859 + HAL1b LINE L1 77 498 -850 343 264 69 14 chr12 97839841 97839985 -46442504 + L1MC4a LINE L1 4057 4208 -1938 1520 234 86 54 chr12 97840195 97840774 -46441715 + MLT1G LTR MaLR 1 585 -5 527 336 99 35 chr12 97840921 97841046 -46441443 + L1MC4a LINE L1 4633 4749 -1397 2114 126 3 0 chr12 97841046 97841348 -46441141 + AluSx SINE Alu 1 303 -9 527 336 99 35 chr12 97841348 97841787 -46440702 + L1MC4a LINE L1 4749 5233 -913 1200 263 147 25 chr12 97841802 97842449 -46440040 + L1MC4a LINE L1 5255 5980 -1828 321 259 100 24 chr12 97842859 97843097 -46439392 - L1MC5 LINE L1 -199 7817 7557 233 219 122 41 chr12 97843187 97843201 -46439288 - L1MC5 LINE L1 -527 7434 7423 7553 23 1 1 chr12 97843201 97844807 -46437682 - L1PA4 LINE L1 0 6155 4549 233 219 122 41 chr12 97844807 97844915 -46437574 - L1MC5 LINE L1 -538 7423 7302 4325 186 16 58 chr12 97845158 97845991 -46436498 - L1MA10 LINE L1 -14 6320 5453 1540 176 9 44 chr12 97845991 97846310 -46436179 - AluJo SINE Alu 0 312 5 4325 186 16 58 chr12 97846310 97846366 -46436123 - L1MA10 LINE L1 -881 5453 5396 426 39 0 0 chr12 97846366 97846418 -46436071 + (TG)n Simple_repeat Simple_repeat 1 52 0 4325 186 16 58 chr12 97846418 97846611 -46435878 - L1MA10 LINE L1 -938 5396 5283 2783 228 19 59 chr12 97846612 97847521 -46434968 - L1M4 LINE L1 -743 5403 4532 436 271 89 68 chr12 97847531 97847985 -46434504 - L1MC5 LINE L1 -809 7152 6761 6600 156 41 2 chr12 97847985 97849167 -46433322 + Tigger3b DNA MER2_type 4 1231 0 436 271 89 68 chr12 97849167 97849273 -46433216 - L1MC5 LINE L1 -1200 6761 6659 26 30 0 0 chr12 97849331 97849364 -46433125 + AT_rich Low_complexity Low_complexity 1 33 0 402 303 115 59 chr12 97849458 97849745 -46432744 - L1MC4a LINE L1 -1460 6348 6046 1650 265 42 11 chr12 97849786 97850330 -46432159 - L1MC4a LINE L1 -1926 5882 5322 225 250 39 29 chr12 97850945 97851049 -46431440 + L1ME LINE L1 5665 5769 -393 2356 61 0 0 chr12 97851199 97851478 -46431011 + AluY SINE Alu 16 294 -17 207 0 0 0 chr12 97851479 97851502 -46430987 + (TA)n Simple_repeat Simple_repeat 1 23 0 1257 181 38 114 chr12 97852403 97852796 -46429693 - MLT1A1 LTR MaLR -2 363 1 887 287 113 21 chr12 97852800 97853315 -46429174 + L1MEc LINE L1 1223 1784 -4612 4366 207 55 116 chr12 97853318 97854778 -46427711 + MLT1-int LTR MaLR 1 1371 0 1502 316 117 35 chr12 97854814 97855764 -46426725 + L2 LINE L2 2152 3198 -115 207 0 0 0 chr12 97855764 97855787 -46426702 + (CA)n Simple_repeat Simple_repeat 2 24 0 1502 316 117 35 chr12 97855787 97855912 -46426577 + L2 LINE L2 3198 3311 -2 1411 182 0 4 chr12 97856187 97856423 -46426066 + AluJb SINE Alu 3 237 -75 285 299 0 58 chr12 97856423 97856510 -46425979 - MIR SINE MIR -170 92 11 223 287 96 26 chr12 97856526 97856641 -46425848 - MIR SINE MIR -94 168 46 502 218 9 18 chr12 97856770 97856880 -46425609 - L2 LINE L2 -14 3299 3191 204 167 0 24 chr12 97858690 97858732 -46423757 + MIR SINE MIR 114 154 -108 589 199 244 17 chr12 97860231 97860407 -46422082 - MIR SINE MIR -1 261 46 2167 177 22 5 chr12 97860582 97860989 -46421500 - MLT2D LTR ERVL 0 414 1 1918 120 60 0 chr12 97861514 97861798 -46420691 + AluSg SINE Alu 1 301 -9 257 311 196 34 chr12 97861949 97862158 -46420331 - L2 LINE L2 -512 2802 2560 1427 201 10 31 chr12 97862197 97862491 -46419998 + AluJo SINE Alu 1 288 -24 239 337 11 22 chr12 97862533 97862625 -46419864 - L2 LINE L2 0 3272 3182 1082 237 75 26 chr12 97863017 97863431 -46419058 - MLT1C LTR MaLR 0 505 1 590 279 105 26 chr12 97864326 97864568 -46417921 - MIR SINE MIR -2 260 2 1413 144 47 0 chr12 97865060 97865275 -46417214 + AluSx SINE Alu 1 225 -87 205 233 14 55 chr12 97865275 97865348 -46417141 + GA-rich Low_complexity Low_complexity 4 73 0 2018 164 123 5 chr12 97866340 97866723 -46415766 - MSTA LTR MaLR 0 428 1 2335 101 0 7 chr12 97868693 97869001 -46413488 + AluSc SINE Alu 1 306 -3 347 275 126 54 chr12 97869873 97870040 -46412449 + L2 LINE L2 3127 3305 -8 1111 152 0 0 chr12 97870436 97870601 -46411888 - FRAM SINE Alu -11 165 1 1278 143 5 23 chr12 97870681 97870897 -46411592 - AluJb SINE Alu -100 212 1 1581 189 19 25 chr12 97871039 97871356 -46411133 + Tigger7 DNA MER2_type 1 315 -2172 958 202 44 0 chr12 97871333 97871536 -46410953 + Tigger7 DNA MER2_type 2271 2482 -9 * 351 313 0 0 chr12 97871579 97871678 -46410811 - MER5A DNA MER1_type -82 107 9 244 315 71 24 chr12 97873409 97873536 -46408953 - L2 LINE L2 -4 3309 3177 355 309 39 39 chr12 97874489 97874667 -46407822 + MLT1J1 LTR MaLR 36 213 -233 309 277 54 42 chr12 97874727 97874893 -46407596 + MLT1I LTR MaLR 240 407 -2 230 358 0 0 chr12 97874937 97875004 -46407485 - L2 LINE L2 -5 3267 3201 8114 133 17 30 chr12 97875013 97877197 -46405292 + L1PA11 LINE L1 4027 6174 0 213 132 0 0 chr12 97877744 97877782 -46404707 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1761 116 63 76 chr12 97878094 97878474 -46404015 + THE1C LTR MaLR 1 375 0 326 149 69 46 chr12 97878810 97878897 -46403592 + L1MD3 LINE L1 7890 7978 -17 253 277 12 12 chr12 97878901 97878984 -46403505 + GA-rich Low_complexity Low_complexity 3 85 0 346 323 84 46 chr12 97881348 97881587 -46400902 - MIR SINE MIR -8 254 7 21 57 0 0 chr12 97882397 97882432 -46400057 + AT_rich Low_complexity Low_complexity 1 35 0 376 293 70 32 chr12 97882487 97882644 -46399845 + MER20B DNA MER1_type 2 164 -619 21 36 0 0 chr12 97883026 97883054 -46399435 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr12 97884163 97884198 -46398291 + AT_rich Low_complexity Low_complexity 1 35 0 323 271 167 21 chr12 97884201 97884345 -46398144 - MIR SINE MIR -16 246 82 513 0 0 0 chr12 97885400 97885457 -46397032 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 2469 65 3 0 chr12 97885457 97885766 -46396723 + AluY SINE Alu 2 311 0 572 301 32 0 chr12 97886427 97886583 -46395906 + MER91B DNA MER1_type 18 178 -12 228 86 0 0 chr12 97886948 97886983 -46395506 + (TC)n Simple_repeat Simple_repeat 2 36 0 1919 124 24 0 chr12 97888289 97888580 -46393909 - Tigger2 DNA MER2_type -1 2717 2420 189 0 0 0 chr12 97889279 97889300 -46393189 + (T)n Simple_repeat Simple_repeat 1 21 0 523 316 52 6 chr12 97889861 97890035 -46392454 + MIR SINE MIR 9 190 -72 273 289 26 0 chr12 97891255 97891331 -46391158 + GA-rich Low_complexity Low_complexity 3 80 0 637 180 111 116 chr12 97892300 97892430 -46390059 + MER5A DNA MER1_type 1 131 -58 2153 105 3 16 chr12 97892430 97892743 -46389746 + AluY SINE Alu 1 309 -2 637 180 111 116 chr12 97892743 97892801 -46389688 + MER5A DNA MER1_type 131 188 -1 418 318 71 10 chr12 97892816 97893014 -46389475 - MIR SINE MIR -50 212 3 300 117 217 0 chr12 97893728 97893788 -46388701 + MER94 DNA DNA 3 75 -59 616 267 106 0 chr12 97894059 97894220 -46388269 - MER45A DNA AcHobo 0 178 1 204 223 117 43 chr12 97894702 97894796 -46387693 - L3b LINE CR1 -200 1383 1283 343 275 52 11 chr12 97894869 97894985 -46387504 - MIR SINE MIR -65 143 36 747 247 156 48 chr12 97895126 97895478 -46387011 + MER57A LTR ERV1 14 403 0 230 196 18 18 chr12 97896552 97896608 -46385881 + MIR SINE MIR 75 130 -132 23 0 0 0 chr12 97896867 97896890 -46385599 + AT_rich Low_complexity Low_complexity 1 23 0 4452 168 10 18 chr12 97896939 97897775 -46384714 + L1MB1 LINE L1 5340 6168 0 22991 178 19 20 chr12 97897856 97904658 -46377831 + L1PA11 LINE L1 1 7608 -4 345 340 128 0 chr12 97904854 97904995 -46377494 + MIR SINE MIR 55 213 -49 198 0 0 0 chr12 97905849 97905871 -46376618 + (CA)n Simple_repeat Simple_repeat 2 23 0 351 187 65 49 chr12 97906166 97906289 -46376200 + L1MC5 LINE L1 7614 7738 -223 1018 144 7 0 chr12 97906295 97906448 -46376041 + Tigger3(Golem) DNA MER2_type 2861 3014 -15 967 184 56 0 chr12 97906675 97906854 -46375635 + MER20 DNA MER1_type 31 219 0 192 216 0 0 chr12 97906857 97906894 -46375595 - L3 LINE CR1 -2 1575 1539 225 244 30 104 chr12 97907755 97907890 -46374599 + L1MC5 LINE L1 7411 7535 -426 612 176 7 66 chr12 97907897 97908033 -46374456 + FLAM_A SINE Alu 1 128 -5 45 55 0 0 chr12 97908278 97908351 -46374138 + AT_rich Low_complexity Low_complexity 1 73 0 511 283 19 25 chr12 97908949 97909108 -46373381 - MIR3 SINE MIR -18 190 33 1395 228 53 8 chr12 97909275 97909670 -46372819 + LTR37A LTR ERV1 13 425 -1 678 266 24 34 chr12 97909736 97909943 -46372546 - MIR SINE MIR -56 206 2 2257 92 0 0 chr12 97910500 97910809 -46371680 - AluY SINE Alu 0 309 1 214 322 17 51 chr12 97911400 97911518 -46370971 + L2 LINE L2 2554 2667 -647 302 62 42 0 chr12 97912662 97912710 -46369779 + MADE1 DNA Mariner 31 80 0 233 205 246 41 chr12 97913941 97914063 -46368426 - L2 LINE L2 -2 3311 3165 333 0 0 0 chr12 97914223 97914260 -46368229 + (CA)n Simple_repeat Simple_repeat 1 37 0 1431 207 21 52 chr12 97915166 97915552 -46366937 + MLT1A2 LTR MaLR 1 374 0 2281 104 0 3 chr12 97915558 97915857 -46366632 - AluSx SINE Alu -5 307 10 1582 163 9 75 chr12 97916138 97916458 -46366031 - AluSx SINE Alu -13 299 1 771 306 60 8 chr12 97916499 97916852 -46365637 - L1ME LINE L1 -431 5739 5369 206 318 206 9 chr12 97918699 97918806 -46363683 - L2 LINE L2 -3 3310 3183 202 280 80 0 chr12 97919056 97919131 -46363358 + MIR SINE MIR 182 262 0 572 339 66 20 chr12 97920490 97920882 -46361607 + L2 LINE L2 1634 2043 -1271 883 382 111 39 chr12 97921687 97923456 -46359033 + L2 LINE L2 1419 3296 -17 632 371 36 21 chr12 97923454 97923925 -46358564 - L2 LINE L2 -556 2758 2281 * 1846 140 7 21 chr12 97924367 97924678 -46357811 - AluSx SINE Alu 0 309 3 1271 252 49 106 chr12 97925073 97925697 -46356792 + HAL1 LINE L1 948 1503 -1004 1429 209 60 0 chr12 97925697 97925980 -46356509 + AluJo SINE Alu 3 302 0 1271 252 49 106 chr12 97925980 97926286 -46356203 + HAL1 LINE L1 1503 1825 -682 25 31 0 0 chr12 97926288 97926320 -46356169 + AT_rich Low_complexity Low_complexity 1 32 0 1794 231 77 90 chr12 97926479 97926779 -46355710 + MLT1E1 LTR MaLR 4 306 -348 1544 53 0 0 chr12 97926779 97927002 -46355487 + L1PA5 LINE L1 5948 6170 0 1794 231 77 90 chr12 97927002 97927336 -46355153 + MLT1E1 LTR MaLR 306 631 -23 773 141 0 0 chr12 97927438 97927566 -46354923 + L1PA5 LINE L1 6019 6146 -8 24 0 0 0 chr12 97927566 97927590 -46354899 + AT_rich Low_complexity Low_complexity 1 24 0 970 287 54 12 chr12 97927615 97927950 -46354539 + MLT1E3 LTR MaLR 276 624 0 1862 117 4 8 chr12 97928200 97928464 -46354025 - AluSx SINE Alu -9 303 41 291 275 0 12 chr12 97929026 97929106 -46353383 + MLT1H LTR MaLR 125 203 -346 229 375 68 30 chr12 97929296 97929533 -46352956 - L2 LINE L2 -2090 1224 979 508 306 35 6 chr12 97929795 97929968 -46352521 + MLT1G1 LTR MaLR 10 187 -408 6123 197 24 61 chr12 98029975 98030391 -46252098 - L1 LINE L1 -1114 5032 4602 307 59 0 0 chr12 98030391 98030445 -46252044 - Alu SINE Alu -1 301 256 6123 197 24 61 chr12 98030445 98030790 -46251699 - L1 LINE L1 -1544 4602 4246 15073 32 4 0 chr12 98030790 98033358 -46249131 - L1PA4 LINE L1 -3 6152 3569 6123 197 24 61 chr12 98033358 98034262 -46248227 - L1 LINE L1 -1900 4246 3377 334 259 18 62 chr12 98034315 98034427 -46248062 - L2 LINE L2 -8 3305 3199 431 358 58 16 chr12 98034762 98034952 -46247537 - MIR3 SINE MIR -7 201 4 270 0 0 0 chr12 98035026 98035056 -46247433 + (CA)n Simple_repeat Simple_repeat 1 30 0 268 299 31 0 chr12 98037787 98037884 -46244605 + (TA)n Simple_repeat Simple_repeat 2 101 0 2454 88 0 0 chr12 98038038 98038346 -46244143 + AluY SINE Alu 1 308 -3 575 306 37 62 chr12 98038446 98038688 -46243801 + HAL1 LINE L1 116 346 -2161 1981 126 0 14 chr12 98038688 98038981 -46243508 + AluJb SINE Alu 23 311 -1 575 306 37 62 chr12 98038981 98039143 -46243346 + HAL1 LINE L1 346 510 -1997 1560 179 0 43 chr12 98039179 98039458 -46243031 + AluJo SINE Alu 1 267 -45 317 326 15 7 chr12 98039748 98039883 -46242606 + HAL1 LINE L1 757 892 -1615 252 0 0 0 chr12 98039883 98039911 -46242578 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1481 143 30 0 chr12 98039976 98040242 -46242247 + L1PB4 LINE L1 5519 5792 -364 272 173 27 13 chr12 98040248 98040323 -46242166 + (TA)n Simple_repeat Simple_repeat 1 76 0 2212 116 39 14 chr12 98040323 98040700 -46241789 + L1PB4 LINE L1 5782 6156 0 256 211 138 96 chr12 98040700 98041012 -46241477 + HAL1 LINE L1 978 1302 -1205 26 64 0 0 chr12 98041613 98041660 -46240829 + AT_rich Low_complexity Low_complexity 1 47 0 527 202 52 57 chr12 98041661 98041854 -46240635 - L1MC5 LINE L1 -51 7910 7719 290 257 0 19 chr12 98041854 98041959 -46240530 + (TA)n Simple_repeat Simple_repeat 2 104 0 614 238 30 98 chr12 98042091 98042499 -46239990 - L1MC5 LINE L1 -883 6925 6564 1720 185 16 29 chr12 98042519 98042833 -46239656 - AluJo SINE Alu -2 310 1 368 111 16 0 chr12 98042973 98043036 -46239453 + (GA)n Simple_repeat Simple_repeat 1 64 0 236 167 0 0 chr12 98043036 98043078 -46239411 + GA-rich Low_complexity Low_complexity 4 45 0 238 336 141 32 chr12 98044471 98044733 -46237756 + L2 LINE L2 2798 3083 -189 4822 49 2 2 chr12 98046656 98047253 -46235236 - L1PA7 LINE L1 -1 6153 5557 2274 71 0 0 chr12 98047253 98047614 -46234875 + L1PA7 LINE L1 5200 5560 -594 284 282 73 24 chr12 98047994 98048118 -46234371 + MIR SINE MIR 11 140 -122 723 280 116 94 chr12 98048221 98048775 -46233714 - MLT1K LTR MaLR 0 588 23 316 301 10 20 chr12 98049365 98049481 -46233008 + GA-rich Low_complexity Low_complexity 1 194 0 1501 158 86 14 chr12 98049612 98049903 -46232586 - AluJo SINE Alu 0 312 1 237 270 108 14 chr12 98050206 98050354 -46232135 - L1ME LINE L1 -338 5783 5622 259 204 74 0 chr12 98052512 98052566 -46229923 + L2 LINE L2 3214 3271 -1 640 273 104 17 chr12 98052940 98053171 -46229318 + MIR SINE MIR 12 262 0 259 274 19 38 chr12 98053370 98053476 -46229013 + MIR SINE MIR 92 195 -67 1883 169 3 0 chr12 98053476 98053760 -46228729 + AluSx SINE Alu 1 285 -27 658 275 69 28 chr12 98055274 98055492 -46226997 - MIR SINE MIR -19 243 17 855 143 0 0 chr12 98055615 98055734 -46226755 + AluJb SINE Alu 1 119 -193 231 36 0 0 chr12 98055734 98055762 -46226727 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 528 271 89 34 chr12 98055858 98056127 -46226362 - L2 LINE L2 0 3313 3030 291 54 0 0 chr12 98056128 98056165 -46226324 + (TA)n Simple_repeat Simple_repeat 2 38 0 1269 81 0 0 chr12 98056165 98056325 -46226164 - AluY SINE Alu -8 303 144 332 389 91 9 chr12 98056761 98057054 -46225435 - L2 LINE L2 -311 3002 2690 368 268 71 0 chr12 98057296 98057408 -46225081 - L2 LINE L2 -610 2704 2585 235 302 32 0 chr12 98057420 98057483 -46225006 - MIR SINE MIR -193 69 5 307 339 154 0 chr12 98058852 98058982 -46223507 - MIR3 SINE MIR -21 187 38 219 59 0 78 chr12 98059118 98059169 -46223320 + (CTA)n Simple_repeat Simple_repeat 1 47 0 460 241 18 77 chr12 98059176 98059346 -46223143 + MIR SINE MIR 102 261 -1 2271 93 0 37 chr12 98059390 98059713 -46222776 - AluY SINE Alu 0 311 1 1545 216 102 68 chr12 98059795 98060349 -46222140 - MLT1F1 LTR MaLR 0 567 1 1900 173 0 0 chr12 98060517 98060817 -46221672 - AluJb SINE Alu 0 312 13 253 346 0 12 chr12 98060930 98061011 -46221478 - MIR3 SINE MIR -48 160 81 2247 80 9 58 chr12 98061115 98061442 -46221047 - AluSx SINE Alu -1 311 1 237 33 0 0 chr12 98061823 98061853 -46220636 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1673 193 25 4 chr12 98061862 98062142 -46220347 - AluJo SINE Alu -26 286 1 201 244 0 0 chr12 98062668 98062709 -46219780 + (CA)n Simple_repeat Simple_repeat 2 42 0 938 193 12 6 chr12 98063759 98063930 -46218559 + FAM SINE Alu 1 172 -3 529 332 73 61 chr12 98064020 98064333 -46218156 - L2 LINE L2 -1 3271 2955 275 225 150 0 chr12 98064743 98064823 -46217666 - L2 LINE L2 -1 3312 3221 * 293 261 159 0 chr12 98064809 98064897 -46217592 + L2 LINE L2 2677 2778 -536 255 320 113 73 chr12 98064903 98065178 -46217311 - L2 LINE L2 -90 3182 2897 289 194 79 65 chr12 98065321 98065460 -46217029 - MLT1J LTR MaLR -61 450 310 370 314 160 5 chr12 98065660 98065848 -46216641 - L2 LINE L2 -529 2785 2569 3531 133 0 24 chr12 98066134 98066674 -46215815 - MER1A DNA MER1_type 0 527 1 1656 176 36 4 chr12 98066773 98067051 -46215438 + AluJo SINE Alu 1 287 -25 980 288 104 64 chr12 98067306 98068108 -46214381 + L2 LINE L2 2337 3215 -98 2035 155 3 3 chr12 98068108 98068417 -46214072 + AluJb SINE Alu 1 309 -3 980 288 104 64 chr12 98068417 98068519 -46213970 + L2 LINE L2 3215 3312 -1 358 324 122 60 chr12 98068545 98069248 -46213241 + L2 LINE L2 1604 2350 -964 358 366 35 7 chr12 98069264 98069406 -46213083 - MIR SINE MIR -110 152 7 403 319 73 25 chr12 98069419 98069623 -46212866 + L1ME4a LINE L1 5714 5927 -194 1457 187 24 44 chr12 98070145 98070439 -46212050 + AluJo SINE Alu 1 288 -24 269 206 0 29 chr12 98070453 98070521 -46211968 + LTR67 LTR ERVL 490 555 -2 5690 77 4 1 chr12 98072193 98072986 -46209503 - L1PA8A LINE L1 -28 6103 5309 4784 114 3 1 chr12 98072989 98073732 -46208757 + L1PA8A LINE L1 4553 5296 -850 510 319 88 10 chr12 98073734 98073938 -46208551 + MIR SINE MIR 26 245 -17 337 256 60 94 chr12 98074573 98074621 -46207868 + MER5A DNA MER1_type 77 125 -64 2156 121 0 3 chr12 98074621 98074918 -46207571 - AluSx SINE Alu -16 296 1 337 256 60 94 chr12 98074918 98074986 -46207503 + MER5A DNA MER1_type 125 189 0 803 200 108 5 chr12 98075059 98075254 -46207235 - MER20 DNA MER1_type -4 215 1 359 256 149 25 chr12 98075718 98075839 -46206650 + MIR3 SINE MIR 23 158 -50 527 260 30 37 chr12 98075969 98076114 -46206375 + L1MC4 LINE L1 7775 7919 -123 183 100 0 0 chr12 98076114 98076144 -46206345 + (TA)n Simple_repeat Simple_repeat 1 30 0 527 260 30 37 chr12 98076144 98076267 -46206222 + L1MC4 LINE L1 7919 8041 -1 259 267 129 20 chr12 98076282 98076383 -46206106 + L2 LINE L2 3016 3127 -145 183 266 31 47 chr12 98076849 98076913 -46205576 + L2 LINE L2 3234 3296 -17 376 241 74 0 chr12 98077025 98077133 -46205356 - MIR SINE MIR 0 262 147 2206 111 76 15 chr12 98077323 98077666 -46204823 - THE1B LTR MaLR 0 364 1 415 243 0 88 chr12 98077753 98077889 -46204600 - L2 LINE L2 -1 3271 3148 574 302 99 19 chr12 98078068 98078280 -46204209 - MIR SINE MIR -3 259 31 564 271 12 77 chr12 98078360 98078577 -46203912 + MIR SINE MIR 3 203 -59 321 295 185 29 chr12 98079118 98079291 -46203198 - MIR SINE MIR -11 251 52 269 119 0 0 chr12 98079297 98079339 -46203150 - L2 LINE L2 -1 3312 3271 294 258 0 119 chr12 98079819 98079970 -46202519 - MIR SINE MIR -73 189 57 854 270 79 18 chr12 98080036 98080314 -46202175 - MLT1I LTR MaLR -19 390 96 31 26 0 0 chr12 98080516 98080554 -46201935 + AT_rich Low_complexity Low_complexity 1 38 0 187 213 85 0 chr12 98081118 98081165 -46201324 + L3 LINE CR1 1526 1576 -1 255 250 0 0 chr12 98082284 98082368 -46200121 + (TA)n Simple_repeat Simple_repeat 1 84 0 1992 145 7 3 chr12 98082370 98082660 -46199829 - AluSx SINE Alu -16 296 6 187 219 0 27 chr12 98082712 98082785 -46199704 + (TA)n Simple_repeat Simple_repeat 2 72 0 310 198 22 33 chr12 98082855 98083037 -46199452 + (TA)n Simple_repeat Simple_repeat 1 180 0 189 213 0 0 chr12 98083050 98083097 -46199392 + (TA)n Simple_repeat Simple_repeat 2 48 0 309 240 0 0 chr12 98083361 98083457 -46199032 + (TA)n Simple_repeat Simple_repeat 2 97 0 599 281 72 53 chr12 98083808 98084334 -46198155 + L1MC/D LINE L1 5279 5811 -311 426 180 123 16 chr12 98084772 98084894 -46197595 - MIR SINE MIR 0 262 128 180 302 0 0 chr12 98086248 98086291 -46196198 + MIR SINE MIR 57 99 -109 190 221 73 0 chr12 98086331 98086399 -46196090 - MIR SINE MIR -62 200 128 204 359 9 28 chr12 98086441 98086547 -46195942 + MIR3 SINE MIR 97 200 -8 2870 3 0 0 chr12 98087287 98087595 -46194894 + AluYa5 SINE Alu 1 308 -3 2062 163 34 37 chr12 98087912 98088348 -46194141 + MLT1C LTR MaLR 1 435 -32 245 154 0 0 chr12 98088348 98088387 -46194102 - Tigger5 DNA MER2_type 0 2323 2285 346 200 29 0 chr12 98088421 98088491 -46193998 - Tigger5 DNA MER2_type -2244 79 8 2034 134 41 44 chr12 98088492 98088857 -46193632 - THE1B LTR MaLR 0 364 1 283 57 0 0 chr12 98088867 98088902 -46193587 + MLT1C LTR MaLR 433 467 0 1986 125 68 6 chr12 98089064 98089385 -46193104 - L1PA15 LINE L1 -1 6164 5824 2120 129 0 16 chr12 98089387 98089690 -46192799 - AluSx SINE Alu -14 298 1 445 122 14 0 chr12 98089702 98089776 -46192713 + L1P LINE L1 3620 3694 -2452 2181 110 3 19 chr12 98089818 98090127 -46192362 + AluY SINE Alu 2 305 -6 732 266 118 26 chr12 98091926 98092230 -46190259 + L2 LINE L2 2968 3299 -14 670 231 49 99 chr12 98092382 98092625 -46189864 - MIR SINE MIR 0 262 32 583 200 49 112 chr12 98092735 98092940 -46189549 - MER20 DNA MER1_type -27 192 1 208 164 0 73 chr12 98093358 98093413 -46189076 + L2 LINE L2 2935 2985 -287 286 264 146 45 chr12 98093530 98093640 -46188849 + L2 LINE L2 3189 3309 -4 292 111 32 0 chr12 98094884 98094947 -46187542 + CT-rich Low_complexity Low_complexity 2 66 0 2151 100 0 4 chr12 98095347 98095659 -46186830 - AluSg SINE Alu 0 312 2 242 206 59 29 chr12 98095718 98095786 -46186703 - MER67D LTR ERV1 -13 501 432 * 517 189 123 15 chr12 98095758 98096006 -46186483 - MER31B LTR ERV1 -76 390 1 739 240 127 32 chr12 98096323 98096631 -46185858 - L2 LINE L2 -14 3299 2963 488 250 0 17 chr12 98096975 98097091 -46185398 + MIR SINE MIR 35 148 -114 255 339 71 16 chr12 98097513 98097640 -46184849 + L2 LINE L2 3137 3270 -2 205 410 0 0 chr12 98097814 98097875 -46184614 + L3b LINE CR1 1464 1524 -59 30 0 0 0 chr12 98098455 98098485 -46184004 + AT_rich Low_complexity Low_complexity 1 30 0 1803 124 19 0 chr12 98098486 98098751 -46183738 - AluJo SINE Alu -41 271 2 23 0 0 0 chr12 98098848 98098871 -46183618 + AT_rich Low_complexity Low_complexity 1 23 0 2028 184 69 31 chr12 98098920 98099399 -46183090 - MLT1D LTR MaLR 0 505 9 1829 160 12 35 chr12 98100100 98100419 -46182070 - AluJo SINE Alu 0 312 1 189 121 0 0 chr12 98100890 98100923 -46181566 + (CA)n Simple_repeat Simple_repeat 2 34 0 314 127 0 32 chr12 98101896 98101959 -46180530 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 383 300 172 27 chr12 98102025 98102242 -46180247 + MIR SINE MIR 10 250 -12 195 49 73 0 chr12 98102436 98102477 -46180012 + (TA)n Simple_repeat Simple_repeat 1 44 0 1944 155 14 0 chr12 98102486 98102777 -46179712 - AluSx SINE Alu -17 295 1 24 53 0 0 chr12 98102777 98102815 -46179674 + AT_rich Low_complexity Low_complexity 1 38 0 470 176 0 0 chr12 98102819 98102893 -46179596 - FRAM SINE Alu -54 122 49 22 0 0 0 chr12 98103066 98103088 -46179401 + AT_rich Low_complexity Low_complexity 1 22 0 2406 39 0 42 chr12 98103773 98104079 -46178410 + AluY SINE Alu 11 303 -8 214 339 108 11 chr12 98104457 98104643 -46177846 - L2 LINE L2 -262 3010 2807 573 193 140 0 chr12 98106000 98106114 -46176375 + FLAM_A SINE Alu 1 130 -3 1914 161 0 3 chr12 98106885 98107207 -46175282 - AluJb SINE Alu 0 312 1 837 273 13 13 chr12 98107449 98107676 -46174813 + MIR SINE MIR 15 241 -21 208 319 0 0 chr12 98107700 98107772 -46174717 + MIR SINE MIR 189 260 -2 4764 141 53 108 chr12 98108142 98108611 -46173878 - L1MC1 LINE L1 -5 6328 5834 1933 159 3 0 chr12 98108611 98108920 -46173569 - AluJb SINE Alu -2 310 1 4764 141 53 108 chr12 98108920 98109486 -46173003 - L1MC1 LINE L1 -499 5834 5238 1380 151 92 75 chr12 98109486 98109791 -46172698 - AluJo SINE Alu -2 310 1 4764 141 53 108 chr12 98109791 98109866 -46172623 - L1MC1 LINE L1 -1095 5238 5243 1793 142 0 61 chr12 98109866 98110177 -46172312 + AluJb SINE Alu 1 292 -20 4764 141 53 108 chr12 98110177 98110210 -46172279 - L1MC1 LINE L1 -1089 5244 5211 2506 50 7 0 chr12 98111234 98111531 -46170958 + AluY SINE Alu 1 299 -12 234 321 46 18 chr12 98112051 98112160 -46170329 - MIR3 SINE MIR -8 200 89 546 282 113 25 chr12 98112403 98112729 -46169760 + MLT1K LTR MaLR 170 524 -64 869 307 27 57 chr12 98112733 98112914 -46169575 + L2 LINE L2 2922 3107 -206 881 139 0 0 chr12 98112914 98113043 -46169446 - FLAM_C SINE Alu -3 130 2 869 307 27 57 chr12 98113043 98113265 -46169224 + L2 LINE L2 3107 3313 0 2133 127 0 0 chr12 98113344 98113627 -46168862 - AluSx SINE Alu -29 283 1 988 123 18 65 chr12 98113911 98114081 -46168408 + AluJo SINE Alu 86 247 -65 306 328 107 8 chr12 98115398 98115520 -46166969 - L2 LINE L2 0 3272 3139 2650 87 5 27 chr12 98115617 98115987 -46166502 - THE1B LTR MaLR -2 362 1 213 139 0 0 chr12 98116732 98116775 -46165714 + (GGA)n Simple_repeat Simple_repeat 2 44 0 544 117 0 0 chr12 98116807 98116884 -46165605 + AluJb SINE Alu 38 114 -198 1252 61 0 11 chr12 98116887 98117068 -46165421 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 262 185 37 0 chr12 98117198 98117252 -46165237 - L2 LINE L2 -2 3311 3256 939 177 0 7 chr12 98117306 98117447 -46165042 - FRAM SINE Alu -30 146 7 233 330 47 19 chr12 98117448 98117554 -46164935 - L2 LINE L2 -38 3275 3167 27 29 0 0 chr12 98118151 98118185 -46164304 + AT_rich Low_complexity Low_complexity 1 34 0 2188 133 0 0 chr12 98118480 98118789 -46163700 - AluSx SINE Alu -3 309 1 27 29 0 0 chr12 98119056 98119090 -46163399 + AT_rich Low_complexity Low_complexity 1 34 0 2262 80 0 33 chr12 98119391 98119692 -46162797 + AluY SINE Alu 1 291 -20 329 317 22 50 chr12 98119951 98120131 -46162358 + L1M4 LINE L1 4963 5137 -1009 2147 146 0 3 chr12 98120526 98120834 -46161655 - AluSx SINE Alu -5 307 1 246 207 180 9 chr12 98121121 98121232 -46161257 - L1ME4a LINE L1 -2 6119 5990 815 216 107 70 chr12 98121944 98122208 -46160281 - MER58B DNA MER1_type -2079 341 61 1836 160 3 22 chr12 98122208 98122526 -46159963 + AluJb SINE Alu 1 312 0 815 216 107 70 chr12 98122526 98122589 -46159900 - MER58B DNA MER1_type -2359 61 2 195 129 0 0 chr12 98123749 98123780 -46158709 + (CA)n Simple_repeat Simple_repeat 1 31 0 183 315 96 0 chr12 98125106 98125179 -46157310 - MIR SINE MIR -136 126 47 1756 181 0 0 chr12 98125189 98125508 -46156981 - AluJb SINE Alu 0 319 1 443 363 38 28 chr12 98125549 98125761 -46156728 - L2 LINE L2 0 3272 3059 398 212 51 59 chr12 98126899 98127017 -46155472 + MIR SINE MIR 146 262 0 1160 162 0 0 chr12 98127295 98127474 -46155015 + AluJb SINE Alu 134 312 0 582 226 17 89 chr12 98128169 98128237 -46154252 - MIR SINE MIR 0 262 191 2458 87 3 0 chr12 98128237 98128548 -46153941 - AluSp SINE Alu -1 312 1 582 226 17 89 chr12 98128548 98128714 -46153775 - MIR SINE MIR -71 191 45 558 225 72 49 chr12 98129165 98129533 -46152956 - L1MEc LINE L1 -3806 2409 2053 232 191 106 32 chr12 98129631 98129725 -46152764 - L1 LINE L1 -1312 4834 4734 244 257 178 14 chr12 98129899 98130175 -46152314 - L1 LINE L1 -1526 4620 4300 411 266 164 29 chr12 98130795 98131070 -46151419 + L1 LINE L1 2185 2496 -3650 842 179 0 0 chr12 98131182 98131305 -46151184 - FLAM_C SINE Alu -20 123 1 936 249 115 16 chr12 98131414 98131780 -46150709 + L2 LINE L2 1627 2028 -1286 861 231 73 46 chr12 98131789 98132157 -46150332 - MER69 DNA AcHobo 0 2526 2149 196 250 0 50 chr12 98132190 98132250 -46150239 + L2 LINE L2 3014 3070 -243 963 204 26 163 chr12 98132269 98132724 -46149765 + L2 LINE L2 2921 3313 0 651 291 111 72 chr12 98132819 98133511 -46148978 + L1 LINE L1 2850 3568 -2578 27 29 0 0 chr12 98133988 98134022 -46148467 + AT_rich Low_complexity Low_complexity 1 34 0 2346 88 6 6 chr12 98134179 98134522 -46147967 + HSMAR2 DNA Mariner 3 345 -957 675 216 8 0 chr12 98134522 98134647 -46147842 + FLAM_A SINE Alu 1 126 -16 5857 123 22 7 chr12 98134648 98135598 -46146891 + HSMAR2 DNA Mariner 338 1301 -1 691 348 87 14 chr12 98135620 98136175 -46146314 + L1 LINE L1 4015 4609 -1537 30 45 0 0 chr12 98136197 98136241 -46146248 + AT_rich Low_complexity Low_complexity 1 44 0 358 257 28 2 chr12 98138006 98138100 -46144389 - MER5A DNA MER1_type -78 100 3 299 113 0 19 chr12 98138100 98138137 -46144352 - MLT2B1 LTR ERVL -3 517 481 279 0 0 0 chr12 98138137 98138168 -46144321 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 351 0 0 0 chr12 98138167 98138206 -46144283 + (GA)n Simple_repeat Simple_repeat 2 40 0 299 113 0 19 chr12 98138168 98138221 -46144268 - MLT2B1 LTR ERVL -39 481 466 201 39 0 0 chr12 98138271 98138297 -46144192 + (TTG)n Simple_repeat Simple_repeat 2 27 0 437 130 200 61 chr12 98138303 98138418 -46144071 - AluJb SINE Alu -181 131 1 1954 167 63 54 chr12 98138421 98138882 -46143607 - MLT2B1 LTR ERVL -50 470 6 769 277 45 10 chr12 98138954 98139061 -46143428 - MIR SINE MIR -2 260 158 2045 152 11 14 chr12 98139061 98139410 -46143079 - MER7A DNA MER2_type 0 346 1 769 277 45 10 chr12 98139410 98139504 -46142985 - MIR SINE MIR -104 158 52 186 118 0 0 chr12 98139782 98139816 -46142673 + (A)n Simple_repeat Simple_repeat 1 34 0 1606 187 43 7 chr12 98140586 98140885 -46141604 + AluJb SINE Alu 1 310 -2 2443 67 0 3 chr12 98141764 98142061 -46140428 + AluY SINE Alu 1 296 -15 1033 161 0 17 chr12 98142846 98143020 -46139469 - AluY SINE Alu -14 297 127 24 0 0 0 chr12 98143576 98143600 -46138889 + AT_rich Low_complexity Low_complexity 1 24 0 620 255 94 35 chr12 98144528 98144814 -46137675 - MER46C DNA MER2_type -13 325 23 276 313 55 31 chr12 98144825 98144953 -46137536 - MIR SINE MIR -108 154 24 325 209 26 52 chr12 98145188 98145303 -46137186 + GA-rich Low_complexity Low_complexity 4 115 0 2177 120 0 3 chr12 98145361 98145652 -46136837 + AluSc SINE Alu 1 290 -19 186 211 0 0 chr12 98146610 98146648 -46135841 + MIR SINE MIR 222 259 -3 21 0 0 0 chr12 98146704 98146725 -46135764 + AT_rich Low_complexity Low_complexity 1 21 0 706 159 0 6 chr12 98146871 98147123 -46135366 + AluJo SINE Alu 1 299 -13 739 215 82 155 chr12 98149364 98149778 -46132711 + L2 LINE L2 2925 3308 -5 196 373 15 0 chr12 98149828 98149895 -46132594 - L2 LINE L2 -93 3179 3112 496 287 31 7 chr12 98149968 98150161 -46132328 + MIR SINE MIR 45 241 -21 265 226 0 0 chr12 98151466 98151528 -46130961 + L1ME3 LINE L1 6020 6081 -81 2214 107 3 49 chr12 98151685 98152012 -46130477 + AluSx SINE Alu 1 312 0 315 244 24 0 chr12 98152380 98152462 -46130027 - MER94 DNA DNA -34 100 17 555 323 108 50 chr12 98152541 98152959 -46129530 + L2 LINE L2 2831 3272 0 188 237 0 17 chr12 98153855 98153914 -46128575 + MIR SINE MIR 165 222 -40 225 0 0 0 chr12 98154235 98154260 -46128229 + (CA)n Simple_repeat Simple_repeat 2 26 0 347 211 148 31 chr12 98154370 98154498 -46127991 - MIR SINE MIR -113 149 7 624 258 29 57 chr12 98154666 98154875 -46127614 + MIR SINE MIR 1 203 -59 246 228 172 28 chr12 98155540 98155685 -46126804 - Charlie7 DNA MER1_type -1 2611 2446 21 0 0 0 chr12 98160080 98160101 -46122388 + AT_rich Low_complexity Low_complexity 1 21 0 323 321 70 70 chr12 98161404 98161762 -46120727 - L1M2 LINE L1 -5831 1018 661 21 0 0 0 chr12 98163031 98163052 -46119437 + AT_rich Low_complexity Low_complexity 1 21 0 2392 90 0 0 chr12 98164431 98164731 -46117758 - AluSx SINE Alu -12 300 1 213 65 0 0 chr12 98165786 98165817 -46116672 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1802 139 4 7 chr12 98165821 98166094 -46116395 - AluJb SINE Alu -40 272 1 280 315 45 0 chr12 98166101 98166212 -46116277 - MIR SINE MIR -70 192 77 219 260 26 39 chr12 98166245 98166322 -46116167 + L3b LINE CR1 1393 1468 -115 2517 55 0 3 chr12 98166997 98167309 -46115180 + AluY SINE Alu 1 311 0 1721 112 0 112 chr12 98167474 98167797 -46114692 - AluJb SINE Alu -15 287 1 563 233 17 8 chr12 98167840 98167960 -46114529 + MER5A DNA MER1_type 1 121 -68 1421 76 14 9 chr12 98168038 98168249 -46114240 + L1MA4 LINE L1 5676 5887 -413 1922 183 9 21 chr12 98168294 98168720 -46113769 + L1MA4 LINE L1 5874 6294 -6 2372 73 3 13 chr12 98168726 98169026 -46113463 + AluY SINE Alu 1 297 -14 1468 102 0 39 chr12 98169805 98170011 -46112478 - AluY SINE Alu -10 301 104 1751 189 10 22 chr12 98170206 98170608 -46111881 + L1MA4 LINE L1 5874 6270 -30 1229 88 6 6 chr12 98170608 98170778 -46111711 + AluY SINE Alu 131 300 -11 2133 120 3 0 chr12 98171124 98171415 -46111074 - AluSx SINE Alu -20 292 1 336 247 27 0 chr12 98171556 98171629 -46110860 - MER2 DNA MER2_type -1 344 270 1740 151 60 0 chr12 98171634 98171919 -46110570 + AluJb SINE Alu 6 307 -5 209 130 0 43 chr12 98171928 98171974 -46110515 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1080 168 5 14 chr12 98171980 98172057 -46110432 - MER2 DNA MER2_type -139 206 130 1596 185 48 9 chr12 98172057 98172392 -46110097 + MER7A DNA MER2_type 1 346 0 1080 168 5 14 chr12 98172392 98172522 -46109967 - MER2 DNA MER2_type -215 130 1 1425 208 121 14 chr12 98172549 98172962 -46109527 + LTR48 LTR ERV1 1 457 -330 272 239 109 22 chr12 98172984 98173076 -46109413 + LTR48B LTR ERV1 386 485 -159 2248 216 93 75 chr12 98173076 98173905 -46108584 + MER21B LTR ERV1 1 844 -19 512 211 109 7 chr12 98173930 98174077 -46108412 + LTR48B LTR ERV1 481 642 -2 1304 219 25 19 chr12 98174515 98174881 -46107608 - L1MB8 LINE L1 0 6178 5811 976 120 0 0 chr12 98176186 98176319 -46106170 + FLAM_C SINE Alu 1 133 0 801 134 0 9 chr12 98176368 98176480 -46106009 - AluJb SINE Alu -115 197 87 183 80 0 0 chr12 98176670 98176695 -46105794 + (A)n Simple_repeat Simple_repeat 1 25 0 2316 94 16 0 chr12 98176820 98177127 -46105362 - AluSx SINE Alu 0 312 1 404 293 162 28 chr12 98177221 98177511 -46104978 - L2 LINE L2 -4 3309 2981 234 351 52 39 chr12 98177634 98177788 -46104701 - L2 LINE L2 -470 2844 2689 2072 107 48 0 chr12 98177792 98178083 -46104406 + AluSx SINE Alu 1 305 -7 396 205 0 12 chr12 98178302 98178385 -46104104 - MER58A DNA MER1_type -11 213 132 4619 139 37 1 chr12 98178413 98179203 -46103286 - L1PB4 LINE L1 -7 6149 5332 185 0 0 39 chr12 98179204 98179230 -46103259 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 971 93 14 0 chr12 98179230 98179370 -46103119 - L1PA11 LINE L1 -26 6148 6007 * 5421 181 25 18 chr12 98179364 98179375 -46103114 - L1PB4 LINE L1 -814 5342 5333 2248 109 0 26 chr12 98179375 98179686 -46102803 - AluSx SINE Alu -8 304 2 1940 124 27 17 chr12 98179690 98179988 -46102501 - AluJb SINE Alu -11 301 1 5421 181 25 18 chr12 98179988 98181227 -46101262 - L1PB4 LINE L1 -825 5331 4078 526 222 95 0 chr12 98181257 98181383 -46101106 - MER58A DNA MER1_type 0 139 2 191 36 36 0 chr12 98181767 98181795 -46100694 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 283 277 30 10 chr12 98182712 98182813 -46099676 + Charlie4 DNA MER1_type 1834 1936 -25 279 0 0 0 chr12 98182813 98182844 -46099645 + (CA)n Simple_repeat Simple_repeat 2 32 0 271 217 0 50 chr12 98182860 98182920 -46099569 + L2 LINE L2 3255 3311 -2 405 261 22 0 chr12 98183202 98183294 -46099195 + L2 LINE L2 3178 3271 -1 2026 170 5 24 chr12 98184266 98184636 -46097853 - MLT1A1 LTR MaLR -2 363 1 26 50 0 0 chr12 98185409 98185449 -46097040 + AT_rich Low_complexity Low_complexity 1 40 0 314 304 129 20 chr12 98185501 98185804 -46096685 + L1MC/D LINE L1 5312 5647 -474 292 245 44 48 chr12 98185868 98186123 -46096366 + L1MC/D LINE L1 5653 5905 -344 189 0 0 0 chr12 98186748 98186769 -46095720 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 739 71 10 0 chr12 98186774 98186872 -46095617 - HY3 scRNA scRNA -2 99 1 1750 136 16 55 chr12 98188210 98188518 -46093971 - AluJb SINE Alu -16 296 1 2134 124 0 10 chr12 98189367 98189681 -46092808 - AluSx SINE Alu -1 311 1 470 167 0 0 chr12 98189893 98189977 -46092512 + FLAM_A SINE Alu 59 142 0 726 159 20 99 chr12 98190954 98191155 -46091334 - MER53 DNA DNA 0 189 5 757 167 0 8 chr12 98191404 98191536 -46090953 - FLAM_A SINE Alu -2 140 10 368 123 0 15 chr12 98191559 98191624 -46090865 + (TTTC)n Simple_repeat Simple_repeat 4 67 0 1825 173 3 7 chr12 98191627 98191927 -46090562 - AluJb SINE Alu -13 299 1 1548 179 22 42 chr12 98192641 98192781 -46089708 + AluJo SINE Alu 3 144 -168 2844 140 32 94 chr12 98192781 98193433 -46089056 + LTR9 LTR ERV1 1 612 0 1548 179 22 42 chr12 98193433 98193604 -46088885 + AluJo SINE Alu 144 308 -4 558 202 8 57 chr12 98193876 98194000 -46088489 + AluJo/FLAM SINE Alu 1 118 -194 1727 140 81 4 chr12 98194000 98194271 -46088218 - AluSg SINE Alu -16 294 3 22 35 0 0 chr12 98194409 98194438 -46088051 + AT_rich Low_complexity Low_complexity 1 29 0 1844 179 0 0 chr12 98195501 98195802 -46086687 + AluJb SINE Alu 2 302 -10 897 236 164 11 chr12 98196039 98196319 -46086170 + LTR48 LTR ERV1 1 323 -464 807 206 0 40 chr12 98196323 98196498 -46085991 - AluJb SINE Alu -8 304 137 994 181 91 80 chr12 98196498 98196884 -46085605 + LTR48B LTR ERV1 241 644 0 1082 250 74 59 chr12 98196905 98197081 -46085408 + MLT1C LTR MaLR 1 173 -294 1743 179 19 22 chr12 98197081 98197394 -46085095 + AluJo SINE Alu 1 312 0 1082 250 74 59 chr12 98197394 98197677 -46084812 + MLT1C LTR MaLR 173 467 0 6554 138 22 24 chr12 98197773 98197962 -46084527 - Tigger1 DNA MER2_type -1 2417 2229 2271 101 3 0 chr12 98197962 98198258 -46084231 - AluSx SINE Alu -15 297 1 6554 138 22 24 chr12 98198258 98199262 -46083227 - Tigger1 DNA MER2_type -189 2229 1226 925 164 11 11 chr12 98199275 98199458 -46083031 - Tigger1 DNA MER2_type -2235 183 1 222 236 18 0 chr12 98199616 98199671 -46082818 - MIR SINE MIR -109 153 98 748 277 46 29 chr12 98199688 98199926 -46082563 - MIR SINE MIR 0 262 21 1103 269 84 61 chr12 98201163 98201716 -46080773 - MLT1E LTR MaLR 0 593 1 314 123 18 0 chr12 98202091 98202148 -46080341 + CT-rich Low_complexity Low_complexity 3 60 0 744 245 5 38 chr12 98203454 98203638 -46078851 + MER5B DNA MER1_type 1 178 0 190 258 108 21 chr12 98204023 98204116 -46078373 - MIR3 SINE MIR -13 195 95 184 338 0 15 chr12 98204189 98204257 -46078232 + MIR SINE MIR 193 259 -3 790 157 0 0 chr12 98204372 98204493 -46077996 + FLAM_A SINE Alu 1 121 -12 250 350 23 60 chr12 98204779 98204996 -46077493 - MIR SINE MIR -50 212 5 24 32 0 0 chr12 98205728 98205759 -46076730 + AT_rich Low_complexity Low_complexity 1 31 0 246 203 17 17 chr12 98205939 98205998 -46076491 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 1608 169 17 31 chr12 98206202 98206492 -46075997 + AluJo SINE Alu 5 290 -22 269 75 75 12 chr12 98206494 98206574 -46075915 + (TA)n Simple_repeat Simple_repeat 1 85 0 1305 207 32 60 chr12 98206604 98206952 -46075537 + MLT1A2 LTR MaLR 37 374 0 2050 109 7 11 chr12 98207063 98207374 -46075115 + AluSq SINE Alu 1 310 0 249 254 0 0 chr12 98207748 98207803 -46074686 - L2 LINE L2 -32 3240 3186 1991 152 3 7 chr12 98207811 98208120 -46074369 - AluJb SINE Alu -4 308 1 33 0 0 0 chr12 98208121 98208154 -46074335 + AT_rich Low_complexity Low_complexity 1 33 0 296 250 75 25 chr12 98208312 98208392 -46074097 + L2 LINE L2 3182 3265 -48 297 68 0 0 chr12 98209750 98209794 -46072695 + (T)n Simple_repeat Simple_repeat 1 44 0 1540 141 111 0 chr12 98209841 98210111 -46072378 + AluSx SINE Alu 1 300 -12 1678 174 17 13 chr12 98211227 98211525 -46070964 + AluJb SINE Alu 1 299 -13 301 305 0 34 chr12 98211525 98211643 -46070846 - L1MC4 LINE L1 -1340 6702 6589 657 200 6 0 chr12 98211646 98212119 -46070370 + (TA)n Simple_repeat Simple_repeat 1 476 0 2407 77 3 13 chr12 98212344 98212654 -46069835 - AluY SINE Alu -4 307 1 2964 132 10 103 chr12 98212660 98213342 -46069147 - L1MA4 LINE L1 -6 6294 5676 563 233 17 8 chr12 98213420 98213540 -46068949 - MER5A DNA MER1_type -68 121 1 1773 164 17 13 chr12 98213583 98213881 -46068608 + AluJb SINE Alu 1 299 -13 301 305 0 34 chr12 98213881 98213999 -46068490 - L1MC4 LINE L1 -1340 6702 6589 657 198 5 0 chr12 98214002 98214365 -46068124 + (TA)n Simple_repeat Simple_repeat 1 393 -233 24 0 0 0 chr12 98214365 98214389 -46068100 + AT_rich Low_complexity Low_complexity 1 24 0 657 198 5 0 chr12 98214389 98214625 -46067864 + (TA)n Simple_repeat Simple_repeat 393 626 0 346 148 12 86 chr12 98214640 98214721 -46067768 + HY5 scRNA scRNA 1 75 -9 210 158 0 0 chr12 98214721 98214759 -46067730 + A-rich Low_complexity Low_complexity 3 40 0 582 271 142 37 chr12 98215409 98215819 -46066670 - MLT1H1 LTR MaLR 0 555 103 1385 159 93 65 chr12 98216021 98216311 -46066178 + AluJo SINE Alu 1 298 -14 662 53 11 0 chr12 98216579 98216674 -46065815 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 386 266 148 0 chr12 98216764 98216892 -46065597 - MLT1L LTR MaLR -3 612 466 679 265 81 28 chr12 98217073 98217356 -46065133 - MLT1L LTR MaLR -315 300 3 231 284 158 56 chr12 98217531 98217746 -46064743 - MIR SINE MIR -3 259 23 318 256 0 0 chr12 98220459 98220537 -46061952 + MLT1K LTR MaLR 511 588 0 281 286 0 0 chr12 98220660 98220723 -46061766 + MIR SINE MIR 53 115 -147 1855 166 0 13 chr12 98220867 98221168 -46061321 + AluJo SINE Alu 1 297 -15 852 181 7 7 chr12 98221178 98221327 -46061162 + FRAM SINE Alu 9 157 -19 251 280 27 0 chr12 98221372 98221447 -46061042 + CT-rich Low_complexity Low_complexity 4 80 0 477 233 59 83 chr12 98221613 98221836 -46060653 - LTR16A LTR ERVL 0 457 233 22 56 0 19 chr12 98222139 98222169 -46060320 + AT_rich Low_complexity Low_complexity 1 31 -22 1745 167 0 20 chr12 98222169 98222463 -46060026 - AluJo SINE Alu -24 288 1 22 56 0 19 chr12 98222463 98222486 -46060003 + AT_rich Low_complexity Low_complexity 31 53 0 1645 156 73 47 chr12 98223709 98224010 -46058479 - AluJb SINE Alu 0 312 4 831 271 55 45 chr12 98224188 98224590 -46057899 - MLT1C LTR MaLR -3 464 59 747 249 58 5 chr12 98224639 98224844 -46057645 + MER20 DNA MER1_type 4 219 0 245 139 0 0 chr12 98225209 98225245 -46057244 + Alu SINE Alu 3 38 -261 1671 210 122 8 chr12 98225249 98225739 -46056750 - L1MC4 LINE L1 -452 7590 7045 206 184 26 0 chr12 98225756 98225794 -46056695 + MER5A DNA MER1_type 149 187 -2 * 332 315 131 0 chr12 98225794 98225920 -46056569 - MIR3 SINE MIR -65 143 1 389 326 11 0 chr12 98225956 98226051 -46056438 - MER5A DNA MER1_type -29 160 65 1534 160 67 11 chr12 98226184 98226494 -46055995 - AluJb SINE Alu 0 325 1 522 213 248 0 chr12 98226640 98226781 -46055708 - MER5A DNA MER1_type -13 176 1 2500 65 0 0 chr12 98226785 98227095 -46055394 + AluY SINE Alu 1 310 -1 570 231 148 18 chr12 98227132 98227301 -46055188 + MER58A DNA MER1_type 34 224 0 516 318 50 10 chr12 98227307 98227505 -46054984 + MIR SINE MIR 13 218 -44 1590 165 32 21 chr12 98227558 98227843 -46054646 + AluJo SINE Alu 1 288 -24 363 278 8 56 chr12 98227861 98227987 -46054502 - MER5A DNA MER1_type -22 167 48 2113 138 0 0 chr12 98227990 98228295 -46054194 - AluJb SINE Alu -7 305 1 1365 161 0 31 chr12 98229133 98229356 -46053133 + AluJo SINE Alu 87 302 -10 859 151 0 14 chr12 98229825 98229964 -46052525 - AluJo SINE Alu -175 137 1 2489 170 21 2 chr12 98230347 98230771 -46051718 + MSTB1 LTR MaLR 1 432 0 24 32 0 0 chr12 98230937 98230968 -46051521 + AT_rich Low_complexity Low_complexity 1 31 0 1618 180 7 27 chr12 98230972 98231266 -46051223 + AluJo SINE Alu 1 288 -24 1076 298 92 27 chr12 98231266 98231336 -46051153 - L2 LINE L2 -18 3295 3231 2122 124 3 10 chr12 98231336 98231650 -46050839 - AluSq SINE Alu -1 312 1 1076 298 92 27 chr12 98231650 98232204 -46050285 - L2 LINE L2 -82 3231 2626 843 259 119 14 chr12 98232232 98232525 -46049964 + MLT1J2 LTR MaLR 2 325 -125 685 324 34 14 chr12 98232575 98232868 -46049621 - L2 LINE L2 -691 2623 2325 199 268 93 0 chr12 98232900 98232961 -46049528 - MIR SINE MIR -61 147 89 1627 163 14 21 chr12 98232982 98233295 -46049194 - AluJo SINE Alu 0 312 2 4877 131 33 85 chr12 98233333 98234282 -46048207 - L1MA5A LINE L1 -10 6287 5444 1999 151 20 3 chr12 98234282 98234587 -46047902 - AluSg SINE Alu 0 310 1 4877 131 33 85 chr12 98234587 98235398 -46047091 - L1MA5A LINE L1 -853 5444 4592 2120 138 0 6 chr12 98236120 98236431 -46046058 + AluJb SINE Alu 4 312 0 2061 171 3 14 chr12 98236616 98236985 -46045504 + MLT1A1 LTR MaLR 1 365 0 234 0 0 0 chr12 98237769 98237795 -46044694 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1569 188 0 24 chr12 98237796 98238083 -46044406 - AluJb SINE Alu -32 280 1 249 83 0 0 chr12 98238113 98238149 -46044340 + (TC)n Simple_repeat Simple_repeat 2 37 0 776 175 0 28 chr12 98238163 98238306 -46044183 - AluJo SINE Alu -154 158 20 189 336 112 7 chr12 98238402 98238545 -46043944 - L2 LINE L2 -8 3264 3107 2632 45 7 0 chr12 98238561 98238870 -46043619 + AluY SINE Alu 1 311 0 848 165 8 0 chr12 98239588 98239721 -46042768 - AluJo SINE Alu -178 134 1 404 310 26 9 chr12 98240910 98241026 -46041463 - L2 LINE L2 -1 3271 3154 26 0 0 0 chr12 98241030 98241056 -46041433 + AT_rich Low_complexity Low_complexity 1 26 0 198 269 10 125 chr12 98241136 98241178 -46041311 + MIR SINE MIR 111 156 -106 1774 152 3 38 chr12 98241178 98241501 -46040988 + AluSx SINE Alu 4 316 0 198 269 10 125 chr12 98241501 98241561 -46040928 + MIR SINE MIR 156 202 -60 1726 189 3 20 chr12 98242377 98242678 -46039811 + AluJo SINE Alu 1 296 -16 1092 23 0 0 chr12 98243015 98243143 -46039346 - L1PA5 LINE L1 -7 6147 6020 364 216 41 10 chr12 98244191 98244288 -46038201 - MER112 DNA MER1_type -6 254 155 904 178 6 0 chr12 98244290 98244447 -46038042 + FAM SINE Alu 1 158 -17 25 0 0 0 chr12 98244582 98244607 -46037882 + AT_rich Low_complexity Low_complexity 1 25 0 336 111 0 0 chr12 98244797 98244851 -46037638 + (TG)n Simple_repeat Simple_repeat 2 55 0 242 261 0 0 chr12 98245377 98245442 -46037047 - MIR SINE MIR 0 262 198 2255 140 52 0 chr12 98245449 98245850 -46036639 + MSTA LTR MaLR 7 428 0 431 296 30 53 chr12 98245853 98245973 -46036516 - MIR SINE MIR -63 199 82 2264 89 4 0 chr12 98245973 98246290 -46036199 + AluSp SINE Alu 1 318 0 431 296 30 53 chr12 98246290 98246337 -46036152 - MIR SINE MIR -180 82 35 346 313 0 10 chr12 98246479 98246575 -46035914 - L2 LINE L2 0 3272 3178 926 135 0 14 chr12 98247126 98247267 -46035222 - FLAM_C SINE Alu -4 139 1 198 295 19 57 chr12 98247340 98247445 -46035044 + MIR3 SINE MIR 15 115 -93 345 270 58 29 chr12 98247818 98247955 -46034534 + MIR SINE MIR 111 251 -11 183 129 0 0 chr12 98249145 98249176 -46033313 + (TA)n Simple_repeat Simple_repeat 2 32 0 2110 71 14 14 chr12 98249230 98249548 -46032941 - AluY SINE Alu 0 318 1 822 144 0 0 chr12 98249838 98249956 -46032533 - AluSq/x SINE Alu -195 118 1 870 235 12 0 chr12 98250048 98250218 -46032271 - AluJo SINE Alu -47 265 94 2007 147 15 0 chr12 98250218 98250552 -46031937 + Tigger6a DNA MER2_type 133 471 -612 1386 207 39 9 chr12 98250685 98251019 -46031470 + MLT2D LTR ERVL 23 366 -48 441 133 0 0 chr12 98251081 98251156 -46031333 + (TCCA)n Simple_repeat Simple_repeat 3 77 0 275 137 0 0 chr12 98251164 98251215 -46031274 - MLT2C1 LTR ERVL -8 389 349 1630 172 56 0 chr12 98252205 98252490 -46029999 - AluJb SINE Alu -11 301 1 429 229 125 10 chr12 98252607 98252753 -46029736 + MLT1F1 LTR MaLR 9 210 -339 245 163 0 0 chr12 98252775 98252824 -46029665 - L1M3 LINE L1 -377 5806 5758 1420 184 12 54 chr12 98252825 98252934 -46029555 + L1MB4 LINE L1 5771 5883 -297 869 165 0 0 chr12 98252934 98253067 -46029422 - FLAM_C SINE Alu 0 133 1 1420 184 12 54 chr12 98253067 98253392 -46029097 + L1MB4 LINE L1 5883 6162 -18 1594 215 43 8 chr12 98253511 98253879 -46028610 + MLT1F1 LTR MaLR 187 567 0 488 266 16 0 chr12 98254580 98254708 -46027781 - FLAM_A SINE Alu -3 130 1 1812 170 3 0 chr12 98254901 98255183 -46027306 + AluJo SINE Alu 5 287 -25 838 134 0 15 chr12 98255279 98255413 -46027076 - AluJb SINE Alu -180 132 1 200 350 41 49 chr12 98255587 98255710 -46026779 + MIR SINE MIR 25 146 -62 244 214 0 0 chr12 98255824 98255866 -46026623 + G-rich Low_complexity Low_complexity 1 42 0 693 224 84 39 chr12 98256326 98256460 -46026029 - MER5A DNA MER1_type -1 188 43 591 189 44 121 chr12 98256460 98256757 -46025732 - ORSL DNA AcHobo -1 274 1 693 224 84 39 chr12 98256757 98256801 -46025688 - MER5A DNA MER1_type -146 43 2 328 272 156 32 chr12 98257563 98258030 -46024459 - L1ME4a LINE L1 -24 6097 5573 21 0 0 0 chr12 98258389 98258410 -46024079 + AT_rich Low_complexity Low_complexity 1 21 0 769 293 23 4 chr12 98258723 98258979 -46023510 - MIR SINE MIR 0 262 2 1724 187 0 14 chr12 98259081 98259375 -46023114 - AluJb SINE Alu -22 290 1 257 242 30 0 chr12 98259509 98259575 -46022914 - MLT1L LTR MaLR -223 392 325 2440 157 19 0 chr12 98260179 98260594 -46021895 - Tigger6 DNA MER2_type -660 423 1 409 236 24 0 chr12 98261514 98261637 -46020852 + MER117 DNA MER1_type 44 169 -28 2038 129 10 3 chr12 98261663 98261957 -46020532 - AluSx SINE Alu -16 296 1 726 198 0 0 chr12 98262124 98262245 -46020244 - FLAM_C SINE Alu -18 125 5 211 229 42 0 chr12 98262552 98262600 -46019889 + GA-rich Low_complexity Low_complexity 4 53 0 1969 124 16 23 chr12 98263324 98263631 -46018858 + AluJb SINE Alu 1 305 -7 428 19 0 0 chr12 98263671 98263723 -46018766 + L1PA12 LINE L1 6115 6166 -2 2224 92 10 3 chr12 98263726 98264018 -46018471 - AluSq SINE Alu -17 296 3 26 30 0 0 chr12 98264022 98264055 -46018434 + AT_rich Low_complexity Low_complexity 1 33 0 958 199 202 86 chr12 98264068 98264219 -46018270 + L2 LINE L2 2888 3020 -293 2022 90 90 14 chr12 98264219 98264507 -46017982 - AluY SINE Alu -1 310 1 958 199 202 86 chr12 98264507 98264630 -46017859 + L2 LINE L2 3020 3127 -186 1739 177 9 28 chr12 98264630 98264947 -46017542 - AluJo SINE Alu -1 311 1 958 199 202 86 chr12 98264947 98265053 -46017436 + L2 LINE L2 3127 3313 0 1540 154 0 41 chr12 98265262 98265528 -46016961 - AluJb SINE Alu -24 288 34 26 0 0 0 chr12 98265561 98265587 -46016902 + AT_rich Low_complexity Low_complexity 1 26 0 2805 188 51 19 chr12 98265733 98266319 -46016170 - MER6A DNA MER2_type 0 605 1 1683 286 52 6 chr12 98266456 98266953 -46015536 - LTR33 LTR ERVL 0 521 2 1434 193 7 38 chr12 98267210 98267532 -46014957 - AluJb SINE Alu 0 317 5 486 307 119 14 chr12 98267549 98267625 -46014864 + MIR SINE MIR 18 85 -177 900 195 29 15 chr12 98267625 98267830 -46014659 - MER3 DNA MER1_type -1 208 1 486 307 119 14 chr12 98267830 98267971 -46014518 + MIR SINE MIR 85 258 -4 2182 137 0 0 chr12 98268247 98268554 -46013935 + AluSx SINE Alu 1 307 -5 357 232 65 113 chr12 98269104 98269289 -46013200 + L2 LINE L2 3111 3286 -27 1551 218 64 26 chr12 98269409 98269876 -46012613 - Charlie4a DNA MER1_type -4 504 20 378 234 140 22 chr12 98270372 98270594 -46011895 - L1ME LINE L1 -302 6213 5966 324 236 35 11 chr12 98270714 98270888 -46011601 + (TA)n Simple_repeat Simple_repeat 2 179 0 2127 118 0 30 chr12 98270892 98271197 -46011292 - AluSg SINE Alu -14 296 1 292 258 0 0 chr12 98271242 98271331 -46011158 - L1P LINE L1 -722 5429 5341 288 0 0 0 chr12 98271477 98271509 -46010980 + (TG)n Simple_repeat Simple_repeat 2 33 0 524 80 13 0 chr12 98272405 98272480 -46010009 + MADE1 DNA Mariner 1 76 -4 5039 180 9 18 chr12 98274412 98274455 -46008034 - L1PB1 LINE L1 -317 5834 5792 432 0 0 0 chr12 98274455 98274503 -46007986 + (TA)n Simple_repeat Simple_repeat 1 48 0 5039 180 9 18 chr12 98274503 98275675 -46006814 - L1PB1 LINE L1 -359 5792 4638 2360 84 3 3 chr12 98275675 98275986 -46006503 + AluY SINE Alu 1 311 0 5039 180 9 18 chr12 98275986 98276535 -46005954 - L1PB1 LINE L1 -1513 4638 4086 1544 193 30 27 chr12 98277214 98277510 -46004979 - AluJo SINE Alu -15 297 1 303 246 82 45 chr12 98278549 98278683 -46003806 - LTR16C LTR ERVL -1 490 352 6963 161 17 3 chr12 98278740 98280839 -46001650 - L1PA13 LINE L1 0 6163 4047 422 261 31 23 chr12 98281311 98281441 -46001048 + MIR SINE MIR 73 203 -59 1859 169 14 10 chr12 98282233 98282529 -45999960 - AluJb SINE Alu -15 297 1 184 247 206 0 chr12 98282665 98282738 -45999751 + MIR SINE MIR 159 246 -16 895 205 27 16 chr12 98282852 98283225 -45999264 - L1ME LINE L1 -743 5797 5484 2642 214 44 44 chr12 98283242 98284101 -45998388 - L1ME LINE L1 -1127 5413 4555 * 3290 156 45 58 chr12 98284085 98284911 -45997578 - L1ME LINE L1 -4284 2256 1442 435 262 76 14 chr12 98285130 98285275 -45997214 - MIR SINE MIR -58 204 51 430 305 30 66 chr12 98285340 98285674 -45996815 + LTR16B LTR ERVL 131 452 -12 233 139 69 14 chr12 98286791 98286863 -45995626 + (TA)n Simple_repeat Simple_repeat 2 77 0 544 200 184 0 chr12 98286883 98287008 -45995481 - MIR SINE MIR -86 176 29 401 250 290 0 chr12 98287033 98287157 -45995332 + MER5A DNA MER1_type 30 189 0 238 153 28 97 chr12 98287093 98287165 -45995324 - MER5A DNA MER1_type -114 75 9 * 1474 120 0 14 chr12 98287464 98287673 -45994816 + AluSg SINE Alu 37 242 -68 378 293 159 43 chr12 98287692 98287900 -45994589 + L3 LINE CR1 342 573 -1004 712 249 257 23 chr12 98287932 98288278 -45994211 - L2 LINE L2 -1 3312 2886 413 305 98 49 chr12 98288483 98288850 -45993639 + L3 LINE CR1 615 999 -578 253 231 124 145 chr12 98288866 98289052 -45993437 - MER5A DNA MER1_type -7 182 1 401 342 263 8 chr12 98289490 98289870 -45992619 + L3 LINE CR1 1100 1576 -1 2118 141 0 7 chr12 98290379 98290684 -45991805 - AluSx SINE Alu -9 303 1 2088 134 3 0 chr12 98291119 98291410 -45991079 - AluSx SINE Alu -20 292 1 1985 178 8 5 chr12 98291410 98291798 -45990691 - L1MC2 LINE L1 -192 6152 5764 329 294 49 25 chr12 98291807 98291970 -45990519 + MARNA DNA Mariner 243 409 -177 229 370 110 0 chr12 98292062 98292216 -45990273 - L2 LINE L2 -6 3266 3096 633 258 152 23 chr12 98292452 98292669 -45989820 - MIR SINE MIR -16 246 2 1870 151 3 63 chr12 98292827 98293144 -45989345 - AluSx SINE Alu -14 298 1 2125 129 0 0 chr12 98293590 98293885 -45988604 + AluSx SINE Alu 1 295 -17 329 317 22 50 chr12 98294292 98294472 -45988017 - L1M4 LINE L1 -1009 5137 4963 2271 80 0 33 chr12 98294732 98295034 -45987455 - AluY SINE Alu -19 292 1 27 29 0 0 chr12 98295335 98295369 -45987120 + AT_rich Low_complexity Low_complexity 1 34 0 2188 133 0 0 chr12 98295636 98295945 -45986544 + AluSx SINE Alu 1 309 -3 27 29 0 0 chr12 98296238 98296272 -45986217 + AT_rich Low_complexity Low_complexity 1 34 0 233 330 47 19 chr12 98296869 98296975 -45985514 + L2 LINE L2 3167 3275 -38 952 170 0 7 chr12 98296976 98297117 -45985372 + FRAM SINE Alu 7 146 -30 582 333 163 36 chr12 98297740 98298551 -45983938 - L2 LINE L2 -189 3083 2175 2082 123 13 10 chr12 98301314 98301623 -45980866 + AluSg SINE Alu 1 310 0 207 0 0 0 chr12 98301926 98301949 -45980540 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 411 73 0 0 chr12 98302407 98302462 -45980027 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 1923 167 0 6 chr12 98302467 98302779 -45979710 - AluJb SINE Alu -2 310 1 510 247 0 0 chr12 98302792 98302889 -45979600 + FLAM_C SINE Alu 23 119 -24 257 51 26 0 chr12 98302889 98302928 -45979561 + (TAAAA)n Simple_repeat Simple_repeat 3 42 0 804 277 39 22 chr12 98302928 98303159 -45979330 + MIR SINE MIR 24 258 -4 386 274 95 60 chr12 98304445 98304613 -45977876 + MER5B DNA MER1_type 2 175 -3 212 83 0 28 chr12 98305246 98305282 -45977207 + (TTA)n Simple_repeat Simple_repeat 2 36 0 183 42 0 0 chr12 98306327 98306351 -45976138 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2261 110 0 3 chr12 98306490 98306789 -45975700 + AluSx SINE Alu 1 298 -14 642 193 96 0 chr12 98307405 98307540 -45974949 - MIR SINE MIR -51 211 64 1810 201 63 49 chr12 98307585 98308077 -45974412 + MLT1D LTR MaLR 1 499 -6 303 269 65 9 chr12 98308441 98308549 -45973940 + MIR SINE MIR 17 130 -78 781 271 84 13 chr12 98309028 98309253 -45973236 - MIR SINE MIR -9 253 13 1608 141 77 30 chr12 98309369 98309667 -45972822 + AluJb SINE Alu 1 312 0 2357 47 14 7 chr12 98310114 98310410 -45972079 - AluY SINE Alu -13 298 1 217 235 29 29 chr12 98310512 98310580 -45971909 - MIR3 SINE MIR -132 76 9 460 271 106 56 chr12 98312110 98312394 -45970095 + MLT1J2 LTR MaLR 2 299 -151 1834 219 50 61 chr12 98312488 98313009 -45969480 + MLT1F LTR MaLR 19 533 -9 208 326 109 0 chr12 98313027 98313119 -45969370 + L2 LINE L2 3194 3295 -18 365 284 20 0 chr12 98313400 98313502 -45968987 - MIR SINE MIR -36 226 123 261 0 0 0 chr12 98314043 98314072 -45968417 + (A)n Simple_repeat Simple_repeat 1 29 0 2389 25 42 0 chr12 98315231 98315515 -45966974 + AluY SINE Alu 1 296 -15 2006 145 6 25 chr12 98315523 98315873 -45966616 + AluJo SINE Alu 1 344 0 27 0 0 0 chr12 98316416 98316443 -45966046 + AT_rich Low_complexity Low_complexity 1 27 0 776 257 163 34 chr12 98316634 98317046 -45965443 + LTR16C LTR ERVL 7 471 -20 199 399 68 0 chr12 98317307 98317440 -45965049 + L2 LINE L2 2324 2465 -849 181 129 0 0 chr12 98317427 98317458 -45965031 - L3 LINE CR1 -596 981 951 * 613 103 0 31 chr12 98318747 98318888 -45963601 - AluSp/q SINE Alu 0 313 202 186 342 66 0 chr12 98318949 98319025 -45963464 + L2 LINE L2 3145 3225 -47 1465 135 164 0 chr12 98319126 98319370 -45963119 - AluJb SINE Alu -28 284 1 241 282 0 105 chr12 98319375 98319499 -45962990 + L2 LINE L2 3156 3266 -6 875 155 23 35 chr12 98321427 98321593 -45960896 - MER58A DNA MER1_type -15 209 46 257 200 0 0 chr12 98321593 98321638 -45960851 + Alu SINE Alu 1 45 -258 1691 177 7 10 chr12 98321807 98322095 -45960394 - AluSx SINE Alu -25 287 1 1300 99 124 13 chr12 98322095 98322328 -45960161 + MSTA LTR MaLR 170 428 0 393 258 98 0 chr12 98322717 98322839 -45959650 + MIR SINE MIR 20 152 -64 226 412 24 24 chr12 98323418 98323673 -45958816 + L2 LINE L2 2395 2649 -665 237 386 79 45 chr12 98323828 98324095 -45958394 + L2 LINE L2 2842 3117 -155 184 294 44 15 chr12 98324133 98324201 -45958288 + L2 LINE L2 3201 3270 -2 378 243 97 10 chr12 98324484 98324587 -45957902 - L2 LINE L2 -345 2968 2857 1621 169 16 111 chr12 98324587 98324937 -45957552 + MLT1B LTR MaLR 1 305 -85 2135 128 0 0 chr12 98324937 98325261 -45957228 + AluSg SINE Alu 1 324 0 1621 169 16 111 chr12 98325261 98325340 -45957149 + MLT1B LTR MaLR 305 390 0 360 298 25 51 chr12 98325340 98325498 -45956991 - L2 LINE L2 -452 2862 2709 326 292 58 52 chr12 98325601 98325755 -45956734 - MIR3 SINE MIR -29 179 25 181 116 23 23 chr12 98326124 98326167 -45956322 + (TA)n Simple_repeat Simple_repeat 1 43 0 476 303 72 20 chr12 98326263 98326458 -45956031 + MIR SINE MIR 47 251 -11 2030 195 68 9 chr12 98326466 98327024 -45955465 - L1MEc LINE L1 -3025 3190 2600 2274 286 45 27 chr12 98327047 98328615 -45953874 - L1MEc LINE L1 -3943 2453 857 684 292 39 8 chr12 98328690 98328947 -45953542 - L1MEc LINE L1 -5683 713 449 1349 194 60 117 chr12 98328951 98329421 -45953068 + MSTB2 LTR MaLR 15 457 0 481 287 47 43 chr12 98329421 98329675 -45952814 - L1MEc LINE L1 -5944 452 198 526 203 0 76 chr12 98329679 98329797 -45952692 - MER81 DNA DNA -3 111 3 331 246 0 0 chr12 98334046 98334107 -45948382 - L2 LINE L2 -22 3291 3231 649 286 136 59 chr12 98334108 98334813 -45947676 + L2 LINE L2 2461 3231 -82 248 0 31 0 chr12 98334813 98334845 -45947644 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 649 286 136 59 chr12 98334845 98334935 -45947554 + L2 LINE L2 3231 3313 0 25 95 0 0 chr12 98335107 98335181 -45947308 + AT_rich Low_complexity Low_complexity 1 74 0 782 172 152 44 chr12 98335671 98335921 -45946568 + LTR12 LTR ERV1 1 277 -437 326 202 40 30 chr12 98335921 98336020 -45946469 + LTR30 LTR ERV1 544 643 -79 683 125 0 0 chr12 98336021 98336125 -45946364 + LTR12 LTR ERV1 481 584 -130 3642 133 5 0 chr12 98336145 98336715 -45945774 + HERV9 LTR ERV1 58 630 -7769 1903 132 18 71 chr12 98336751 98337145 -45945344 + HERV9 LTR ERV1 630 1002 -7397 * 28331 109 7 12 chr12 98337142 98341523 -45940966 + HERV9 LTR ERV1 1164 5522 -2877 7847 107 2 10 chr12 98341524 98342710 -45939779 + HERV9 LTR ERV1 7221 8396 -3 840 160 152 44 chr12 98342713 98342963 -45939526 + LTR12 LTR ERV1 1 277 -437 343 208 0 0 chr12 98342963 98343040 -45939449 + LTR30 LTR ERV1 544 620 -102 726 169 24 0 chr12 98343040 98343164 -45939325 + LTR12 LTR ERV1 355 481 -233 1509 182 0 8 chr12 98344425 98344667 -45937822 - AluJo SINE Alu -12 300 61 447 19 0 0 chr12 98344668 98344720 -45937769 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 769 158 0 0 chr12 98344720 98344834 -45937655 - FLAM_C SINE Alu -24 119 6 25 37 0 0 chr12 98344838 98344865 -45937624 + AT_rich Low_complexity Low_complexity 1 27 0 1796 150 20 0 chr12 98344873 98345173 -45937316 - L1MC1 LINE L1 -19 6314 6009 1337 235 99 12 chr12 98345291 98345857 -45936632 + MER114 LTR ERV 33 647 -1 236 210 40 10 chr12 98346084 98346184 -45936305 + (TA)n Simple_repeat Simple_repeat 1 103 0 235 299 0 0 chr12 98346352 98346429 -45936060 + A-rich Low_complexity Low_complexity 1 77 0 205 28 0 56 chr12 98346568 98346604 -45935885 + (CA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr12 98346606 98346635 -45935854 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 * 342 98 0 0 chr12 98346634 98346685 -45935804 + (TG)n Simple_repeat Simple_repeat 2 52 0 998 110 69 0 chr12 98346692 98346865 -45935624 - MSTA LTR MaLR -243 185 1 1609 286 149 7 chr12 98348006 98348753 -45933736 + L2 LINE L2 2289 3124 -189 212 302 38 0 chr12 98348753 98348806 -45933683 + polypyrimidine Low_complexity Low_complexity 5 59 0 1551 271 41 20 chr12 98349264 98349773 -45932716 - L2 LINE L2 -978 2336 1817 258 250 0 0 chr12 98349953 98350005 -45932484 + L2 LINE L2 3217 3268 -4 219 259 0 0 chr12 98352343 98352397 -45930092 + CT-rich Low_complexity Low_complexity 3 56 0 493 275 50 33 chr12 98352434 98352616 -45929873 + MIR SINE MIR 2 186 -76 22 0 0 0 chr12 98352868 98352890 -45929599 + AT_rich Low_complexity Low_complexity 1 22 0 200 143 24 0 chr12 98353682 98353724 -45928765 + T-rich Low_complexity Low_complexity 2 44 0 213 321 69 61 chr12 98354580 98354711 -45927778 + MER5B DNA MER1_type 1 132 -46 878 287 108 12 chr12 98354742 98355211 -45927278 - MLT1H1 LTR MaLR 0 590 32 2516 114 11 3 chr12 98355373 98355734 -45926755 + THE1B LTR MaLR 1 364 0 327 25 0 0 chr12 98356527 98356567 -45925922 + (TG)n Simple_repeat Simple_repeat 2 41 0 1591 193 0 37 chr12 98356568 98356864 -45925625 - AluJb SINE Alu -27 285 1 6046 168 109 68 chr12 98357102 98357176 -45925313 - L1MC3 LINE L1 -7 7778 7708 1617 136 101 3 chr12 98357176 98357388 -45925101 - MER44D DNA MER2_type -1883 608 418 204 40 0 0 chr12 98357388 98357413 -45925076 + (TC)n Simple_repeat Simple_repeat 2 26 0 1617 136 101 3 chr12 98357413 98357508 -45924981 - MER44D DNA MER2_type -2073 418 1 6046 168 109 68 chr12 98357508 98357981 -45924508 - L1MC3 LINE L1 -77 7708 7256 267 221 15 15 chr12 98357981 98358049 -45924440 - MLT1F1 LTR MaLR -460 107 40 6046 168 109 68 chr12 98358049 98359071 -45923418 - L1MC3 LINE L1 -529 7256 6075 479 305 98 29 chr12 98359145 98359319 -45923170 - MIR SINE MIR -71 191 6 201 147 0 0 chr12 98359724 98359758 -45922731 + (A)n Simple_repeat Simple_repeat 1 34 0 919 169 77 0 chr12 98360258 98360453 -45922036 - L1MC3 LINE L1 -1361 6424 6215 245 287 76 130 chr12 98360538 98360761 -45921728 - MIR SINE MIR -6 256 46 457 302 139 33 chr12 98361707 98361922 -45920567 - MIR SINE MIR -12 250 13 261 0 0 0 chr12 98361936 98361965 -45920524 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 78 0 0 chr12 98362012 98362063 -45920426 + AT_rich Low_complexity Low_complexity 1 51 0 3601 109 23 2 chr12 98362063 98362621 -45919868 - L1PB1 LINE L1 -2 6865 6296 40946 30 23 1 chr12 98362626 98368636 -45913853 + L1PA2 LINE L1 8 6155 0 13639 186 27 8 chr12 98368635 98371261 -45911228 - L1PB1 LINE L1 -559 6308 3535 * 2813 13 0 0 chr12 98371261 98371570 -45910919 + AluY SINE Alu 1 309 -2 13639 186 27 8 chr12 98371570 98373829 -45908660 - L1PB1 LINE L1 -3332 3535 1321 4342 205 88 1 chr12 98373837 98374899 -45907590 - L1PB1 LINE L1 -5700 1163 10 906 148 20 32 chr12 98374906 98375132 -45907357 - MLT2B3 LTR ERVL -85 460 248 916 165 11 11 chr12 98375142 98375324 -45907165 - L1MD3 LINE L1 -18 7977 7796 459 125 0 0 chr12 98375556 98375628 -45906861 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 252 0 0 0 chr12 98375628 98375656 -45906833 + (TC)n Simple_repeat Simple_repeat 2 29 0 1582 163 28 17 chr12 98375657 98375945 -45906544 - AluJb SINE Alu -21 291 1 396 191 17 17 chr12 98376585 98376700 -45905789 + CT-rich Low_complexity Low_complexity 2 116 0 241 342 93 51 chr12 98376979 98377093 -45905396 + L2 LINE L2 2717 2825 -447 1673 176 31 7 chr12 98377093 98377382 -45905107 - AluJb SINE Alu -16 296 1 241 342 93 51 chr12 98377382 98377534 -45904955 + L2 LINE L2 2825 2988 -284 2164 116 14 3 chr12 98377643 98377937 -45904552 + AluSx SINE Alu 1 297 -15 213 326 121 23 chr12 98378286 98378418 -45904071 - L2 LINE L2 -273 2999 2855 * 386 252 42 17 chr12 98378401 98378520 -45903969 + MIR SINE MIR 8 129 -133 359 275 37 28 chr12 98378816 98378925 -45903564 + L2 LINE L2 3155 3264 -8 2032 199 40 75 chr12 98379383 98379955 -45902534 + MLT2B3 LTR ERVL 3 554 0 423 224 182 12 chr12 98379994 98380164 -45902325 - MIR SINE MIR -1 261 63 4430 208 58 10 chr12 98380322 98381314 -45901175 - MER45B DNA AcHobo 0 1040 1 2070 142 0 10 chr12 98381505 98381815 -45900674 + AluSx SINE Alu 1 307 -5 1532 131 63 0 chr12 98382476 98382744 -45899745 - L1MA5A LINE L1 -6 6291 6007 1880 163 0 7 chr12 98383052 98383352 -45899137 - AluSx SINE Alu -14 298 1 353 266 62 26 chr12 98383400 98383513 -45898976 - L2 LINE L2 0 3313 3197 745 202 0 0 chr12 98383599 98383718 -45898771 - FLAM_C SINE Alu -18 125 7 205 347 41 10 chr12 98383794 98383892 -45898597 - MER5A DNA MER1_type -82 107 7 467 309 52 47 chr12 98385628 98385819 -45896670 + MIR3 SINE MIR 9 200 -8 432 55 0 0 chr12 98386354 98386409 -45896080 + (TA)n Simple_repeat Simple_repeat 1 55 0 295 261 47 49 chr12 98386838 98386969 -45895520 + MIR SINE MIR 42 168 -63 405 280 147 44 chr12 98387865 98387946 -45894543 - MIR SINE MIR -1 261 190 5486 111 3 6 chr12 98387946 98388729 -45893760 - LTR17 LTR ERV1 0 780 1 405 280 147 44 chr12 98388729 98388872 -45893617 - MIR SINE MIR -72 190 14 217 280 230 0 chr12 98389103 98389203 -45893286 - L3 LINE CR1 -2 1575 1453 246 227 57 57 chr12 98389657 98389745 -45892744 + MIR SINE MIR 160 247 -15 455 239 158 94 chr12 98390816 98391146 -45891343 - HAL1 LINE L1 -1 2506 2156 26 30 0 0 chr12 98391541 98391574 -45890915 + AT_rich Low_complexity Low_complexity 1 33 0 1517 181 0 8 chr12 98391710 98391953 -45890536 - AluJo SINE Alu -11 301 61 483 18 0 0 chr12 98391954 98392010 -45890479 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 769 158 0 0 chr12 98392010 98392124 -45890365 - FLAM_C SINE Alu -24 119 6 27 0 0 0 chr12 98392128 98392155 -45890334 + AT_rich Low_complexity Low_complexity 1 27 0 1975 142 10 0 chr12 98392163 98392466 -45890023 - L1MC1 LINE L1 -19 6314 6009 1522 226 84 12 chr12 98392584 98393158 -45889331 + MER114 LTR ERV 33 647 -1 393 39 0 0 chr12 98393383 98393434 -45889055 + (TA)n Simple_repeat Simple_repeat 1 51 0 315 227 160 34 chr12 98394138 98394322 -45888167 + L2 LINE L2 2829 3037 -235 212 344 42 0 chr12 98394383 98394479 -45888010 + L2 LINE L2 3160 3259 -13 222 37 0 0 chr12 98394479 98394506 -45887983 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 426 296 76 0 chr12 98395375 98395507 -45886982 - MER58A DNA MER1_type 0 224 83 1381 163 119 16 chr12 98395522 98395842 -45886647 - MLT1A1 LTR MaLR -12 353 1 296 316 0 0 chr12 98395843 98395922 -45886567 - MER58A DNA MER1_type -28 79 1 472 234 239 12 chr12 98395962 98396129 -45886360 - MLT1A1 LTR MaLR 0 365 161 384 291 159 33 chr12 98396330 98396512 -45885977 + MIR SINE MIR 18 222 -40 351 299 43 70 chr12 98397293 98397480 -45885009 - MIR SINE MIR -44 218 37 546 192 112 0 chr12 98399985 98400110 -45882379 - MER7A DNA MER2_type -209 137 1 258 266 5 67 chr12 98402525 98402785 -45879704 + CT-rich Low_complexity Low_complexity 1 243 0 299 82 0 41 chr12 98403494 98403543 -45878946 + THE1B LTR MaLR 1 47 -317 5450 82 3 0 chr12 98403543 98404274 -45878215 + THE1A-int LTR MaLR 842 1574 -6 2320 114 11 8 chr12 98404282 98404633 -45877856 + THE1A LTR MaLR 4 355 0 1475 161 86 22 chr12 98405418 98405715 -45876774 + AluJb SINE Alu 1 314 0 1423 146 50 42 chr12 98406373 98406442 -45876047 + AluJo SINE Alu 50 117 -195 210 71 0 0 chr12 98406442 98406470 -45876019 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1423 146 50 42 chr12 98406470 98406661 -45875828 + AluJo SINE Alu 117 312 0 1229 297 129 45 chr12 98406955 98408317 -45874172 - HAL1 LINE L1 -1030 1477 2 238 98 0 24 chr12 98408350 98408391 -45874098 + MER53 DNA DNA 2 41 -148 2320 183 44 10 chr12 98408392 98408874 -45873615 - MLT1D LTR MaLR -5 500 3 359 172 279 0 chr12 98408874 98408995 -45873494 + MER53 DNA DNA 34 188 -1 332 329 71 26 chr12 98408996 98409151 -45873338 - MIR SINE MIR -78 184 23 282 241 13 13 chr12 98409153 98409232 -45873257 + CT-rich Low_complexity Low_complexity 2 80 0 2352 157 8 6 chr12 98409242 98409606 -45872883 + MLT1A1 LTR MaLR 1 365 0 819 266 47 5 chr12 98410120 98410334 -45872155 - MER58A DNA MER1_type 0 224 2 241 224 0 0 chr12 98411041 98411090 -45871399 - Charlie5 DNA MER1_type -2529 83 35 1920 163 0 3 chr12 98411179 98411473 -45871016 - AluSx SINE Alu -18 294 2 268 319 60 17 chr12 98412010 98412126 -45870363 + MIR SINE MIR 2 122 -140 608 251 79 75 chr12 98412150 98412510 -45869979 - MLT1K LTR MaLR -4 584 173 4019 189 40 36 chr12 98412510 98413292 -45869197 + LTR1 LTR ERV1 1 785 0 608 251 79 75 chr12 98413292 98413400 -45869089 - MLT1K LTR MaLR -415 173 67 205 346 86 0 chr12 98413442 98413523 -45868966 + MER91C DNA MER1_type 25 112 -28 694 327 25 56 chr12 98414132 98414578 -45867911 - MLT1J LTR MaLR -78 433 2 463 261 18 0 chr12 98415578 98415689 -45866800 + MER94 DNA DNA 1 113 -21 498 255 72 13 chr12 98416335 98416488 -45866001 - MLT1L LTR MaLR -289 326 165 1689 221 0 0 chr12 98416831 98417139 -45865350 - AluSx SINE Alu -4 308 1 347 240 27 23 chr12 98417898 98418065 -45864424 + MIR SINE MIR 21 218 -44 273 264 14 0 chr12 98420174 98420246 -45862243 + (TA)n Simple_repeat Simple_repeat 1 73 0 332 309 123 6 chr12 98420757 98420873 -45861616 + MIR SINE MIR 4 146 -116 180 0 0 0 chr12 98420873 98420893 -45861596 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 332 309 123 6 chr12 98420893 98420938 -45861551 + MIR SINE MIR 146 184 -78 312 293 85 55 chr12 98420962 98421126 -45861363 - MIR SINE MIR -15 247 79 198 0 0 0 chr12 98421133 98421155 -45861334 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 449 89 63 51 chr12 98421170 98421249 -45861240 - L1PA16 LINE L1 -6 6160 6081 2207 107 0 10 chr12 98422784 98423082 -45859407 - AluSx SINE Alu -17 295 1 291 365 63 6 chr12 98423098 98423257 -45859232 + L2 LINE L2 2869 3036 -236 524 209 0 0 chr12 98423262 98423367 -45859122 - MER5B DNA MER1_type -73 105 1 581 179 103 0 chr12 98423375 98423492 -45858997 - MER5A DNA MER1_type 0 189 61 227 91 0 45 chr12 98423495 98423539 -45858950 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 783 140 35 21 chr12 98423654 98423783 -45858706 - L1MA8 LINE L1 -2 6289 6156 243 0 0 0 chr12 98423783 98423810 -45858679 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 783 140 35 21 chr12 98423810 98423823 -45858666 - L1MA8 LINE L1 -135 6156 6145 414 183 0 0 chr12 98423823 98423894 -45858595 - MER5A DNA MER1_type -118 71 1 252 354 194 7 chr12 98423937 98424081 -45858408 + L2 LINE L2 3102 3272 0 783 152 0 0 chr12 98425513 98425691 -45856798 + (TTGG)n Simple_repeat Simple_repeat 2 179 0 1464 214 34 18 chr12 98425773 98426171 -45856318 - Zaphod DNA AcHobo 0 4010 535 1460 229 314 32 chr12 98426163 98426901 -45855588 - Zaphod DNA AcHobo -3039 992 47 * 620 304 154 4 chr12 98427319 98427546 -45854943 - MIR SINE MIR 0 262 2 423 284 178 6 chr12 98427846 98428015 -45854474 - MIR SINE MIR -6 256 59 341 300 87 33 chr12 98429167 98429317 -45853172 - L2 LINE L2 -5 3267 3110 187 351 0 0 chr12 98429436 98429513 -45852976 - L2 LINE L2 -1211 2103 2027 1566 238 147 10 chr12 98429896 98430359 -45852130 + MLT1F LTR MaLR 10 542 0 3289 217 47 26 chr12 98430384 98431191 -45851298 - L1ME2 LINE L1 -10 6154 5331 338 143 0 0 chr12 98431482 98431531 -45850958 + MER63 DNA MER1_type 2 50 -880 23 0 0 0 chr12 98431531 98431554 -45850935 + AT_rich Low_complexity Low_complexity 1 23 0 358 275 83 80 chr12 98431640 98431863 -45850626 - L1ME2 LINE L1 -1767 4379 4153 1545 159 53 43 chr12 98431863 98432165 -45850324 - AluSg SINE Alu 0 310 6 358 275 83 80 chr12 98432165 98432377 -45850112 - L1ME2 LINE L1 -1993 4153 3943 536 243 36 14 chr12 98432389 98432529 -45849960 + MER63 DNA MER1_type 675 817 -245 488 246 57 8 chr12 98432718 98432840 -45849649 - MER5B DNA MER1_type -1 177 50 216 219 0 0 chr12 98432892 98432933 -45849556 - MER5B DNA MER1_type -137 41 1 364 252 261 0 chr12 98433410 98433529 -45848960 - MER5A DNA MER1_type -9 180 31 276 321 54 43 chr12 98433871 98434021 -45848468 - MIR3 SINE MIR -72 136 5 432 0 0 0 chr12 98434114 98434162 -45848327 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2127 115 3 0 chr12 98434164 98434450 -45848039 - AluSx SINE Alu -25 287 1 2158 191 82 0 chr12 98434576 98434968 -45847521 + MSTA LTR MaLR 1 424 -4 237 207 37 98 chr12 98434987 98435005 -45847484 - L2 LINE L2 -8 3264 3246 2055 127 31 0 chr12 98435005 98435296 -45847193 + AluSq SINE Alu 1 300 -13 237 207 37 98 chr12 98435296 98435359 -45847130 - L2 LINE L2 -26 3246 3188 907 268 17 8 chr12 98435584 98435819 -45846670 - MIR SINE MIR -10 252 16 249 232 246 11 chr12 98437012 98437110 -45845379 + MIR SINE MIR 12 129 -79 407 190 25 0 chr12 98437259 98437338 -45845151 - MIR SINE MIR -112 150 70 237 297 40 14 chr12 98438273 98438347 -45844142 - L2 LINE L2 -5 3267 3192 826 270 33 25 chr12 98438467 98438708 -45843781 + MIR SINE MIR 1 243 -19 617 147 0 0 chr12 98438789 98438884 -45843605 + L1PA10 LINE L1 6070 6164 -4 274 301 59 48 chr12 98438960 98439146 -45843343 - L2 LINE L2 -354 2960 2773 1628 188 0 17 chr12 98439648 98439940 -45842549 - AluJb SINE Alu -25 287 1 207 234 234 39 chr12 98440008 98440085 -45842404 + MIR SINE MIR 6 97 -165 634 181 14 0 chr12 98440301 98440445 -45842044 + GA-rich Low_complexity Low_complexity 2 147 0 330 246 0 0 chr12 98443524 98443585 -45838904 - L2 LINE L2 -22 3291 3231 646 282 131 61 chr12 98443586 98444291 -45838198 + L2 LINE L2 2461 3231 -82 248 0 31 0 chr12 98444291 98444323 -45838166 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 646 282 131 61 chr12 98444323 98444413 -45838076 + L2 LINE L2 3231 3313 0 25 95 0 0 chr12 98444585 98444659 -45837830 + AT_rich Low_complexity Low_complexity 1 74 0 226 93 47 47 chr12 98445149 98445192 -45837297 + LTR30 LTR ERV1 1 43 -679 558 184 184 53 chr12 98445192 98445399 -45837090 + LTR12 LTR ERV1 44 277 -437 359 202 40 30 chr12 98445399 98445498 -45836991 + LTR30 LTR ERV1 544 643 -79 729 125 0 0 chr12 98445499 98445603 -45836886 + LTR12 LTR ERV1 481 584 -130 31337 122 19 17 chr12 98445623 98450997 -45831492 + HERV9 LTR ERV1 58 5522 -2877 8462 105 2 10 chr12 98450998 98452184 -45830305 + HERV9 LTR ERV1 7221 8396 -3 850 140 124 27 chr12 98452187 98452374 -45830115 + LTR12 LTR ERV1 1 259 -455 372 190 48 69 chr12 98452418 98452548 -45829941 + LTR30 LTR ERV1 375 477 -92 619 122 33 0 chr12 98452548 98452638 -45829851 + LTR12 LTR ERV1 389 481 -233 1560 201 30 79 chr12 98453852 98454280 -45828209 - MLT1C LTR MaLR 0 467 61 217 247 113 41 chr12 98454643 98454740 -45827749 + MER5A DNA MER1_type 9 112 -77 440 264 157 30 chr12 98454992 98455189 -45827300 - MIR SINE MIR -39 223 2 2548 120 83 10 chr12 98456121 98456520 -45825969 - MSTA LTR MaLR 0 428 1 451 283 43 37 chr12 98456710 98456877 -45825612 - MIR SINE MIR -62 146 33 2001 232 132 40 chr12 98457348 98458164 -45824325 - L1MCb LINE L1 -5154 891 1 211 278 237 21 chr12 98458873 98458970 -45823519 - MER5A DNA MER1_type -6 183 66 905 159 0 14 chr12 98458970 98459115 -45823374 - FLAM_C SINE Alu 0 143 1 366 222 0 0 chr12 98459115 98459187 -45823302 - MER5A DNA MER1_type -114 75 4 411 113 0 0 chr12 98459735 98459797 -45822692 + (TGG)n Simple_repeat Simple_repeat 1 62 0 184 346 0 0 chr12 98459814 98459892 -45822597 + MIR SINE MIR 160 237 -25 436 275 82 50 chr12 98460564 98460786 -45821703 + MIR SINE MIR 30 256 -6 440 223 0 8 chr12 98460967 98461097 -45821392 + CT-rich Low_complexity Low_complexity 1 129 0 215 185 15 92 chr12 98462979 98463044 -45819445 + MIR SINE MIR 110 169 -93 200 281 18 18 chr12 98463395 98463452 -45819037 - L3 LINE CR1 0 1577 1521 4198 118 121 126 chr12 98464111 98465517 -45816972 - pTR5 LTR ERV1 0 2438 743 478 318 4 54 chr12 98465517 98465610 -45816879 + L3 LINE CR1 984 1080 -497 2396 94 7 0 chr12 98465610 98465917 -45816572 + AluY SINE Alu 1 309 -2 478 318 4 54 chr12 98465917 98466062 -45816427 + L3 LINE CR1 1080 1210 -367 291 241 191 22 chr12 98466163 98466326 -45816163 - MIR SINE MIR -7 255 8 380 353 7 40 chr12 98466337 98466487 -45816002 + L3 LINE CR1 1342 1486 -91 778 267 57 47 chr12 98466492 98466792 -45815697 + MLT1J2 LTR MaLR 5 307 -143 2855 213 29 32 chr12 98467671 98468173 -45814316 - MLT1E2 LTR MaLR 0 626 125 1732 189 10 0 chr12 98468173 98468470 -45814019 - AluSx SINE Alu -12 300 1 2855 213 29 32 chr12 98468470 98468595 -45813894 - MLT1E2 LTR MaLR -501 125 1 322 292 22 51 chr12 98469032 98469105 -45813384 - MER5A DNA MER1_type 0 189 120 1345 201 18 91 chr12 98469105 98469499 -45812990 + MLT1A1 LTR MaLR 1 365 0 322 292 22 51 chr12 98469499 98469562 -45812927 - MER5A DNA MER1_type -69 120 57 284 250 0 31 chr12 98469550 98469614 -45812875 + L2 LINE L2 3209 3270 -2 * 1287 181 121 30 chr12 98469620 98469885 -45812604 - AluJo SINE Alu -22 290 2 758 278 51 5 chr12 98470597 98470813 -45811676 + MIR SINE MIR 16 241 -21 298 372 16 8 chr12 98471396 98471517 -45810972 - MIR SINE MIR -66 142 21 1654 147 30 8 chr12 98471899 98472203 -45810286 - AluJb SINE Alu 0 323 14 226 268 7 22 chr12 98472869 98472965 -45809524 + GA-rich Low_complexity Low_complexity 1 94 0 228 189 19 19 chr12 98473877 98473930 -45808559 + MIR SINE MIR 142 194 -68 749 177 0 57 chr12 98474438 98474579 -45807910 - FLAM_C SINE Alu 0 133 1 2400 252 7 23 chr12 98475260 98475815 -45806674 + MLT2B3 LTR ERVL 1 546 -8 238 375 0 0 chr12 98475907 98475987 -45806502 + MER81 DNA DNA 1 80 -34 1308 138 32 5 chr12 98476006 98476223 -45806266 + L1MA5A LINE L1 5601 5823 -474 708 172 16 25 chr12 98476231 98476353 -45806136 + FLAM_A SINE Alu 8 128 -14 3056 126 2 24 chr12 98476366 98476858 -45805631 + L1MA5A LINE L1 5814 6294 -3 23 33 0 0 chr12 98476864 98476894 -45805595 + AT_rich Low_complexity Low_complexity 1 30 0 954 157 124 5 chr12 98477287 98477436 -45805053 - AluJo SINE Alu -20 292 115 775 38 70 0 chr12 98477436 98477593 -45804896 + (TA)n Simple_repeat Simple_repeat 2 169 0 954 157 124 5 chr12 98477593 98477628 -45804861 - AluJo SINE Alu -197 115 86 343 218 26 0 chr12 98478944 98479022 -45803467 - MER116 DNA Mariner 0 80 1 2509 173 64 52 chr12 98479856 98480300 -45802189 + MLT2B1 LTR ERVL 1 453 -67 1657 170 137 0 chr12 98480300 98480606 -45801883 - MER7A DNA MER2_type 0 346 1 2509 173 64 52 chr12 98480606 98480675 -45801814 + MLT2B1 LTR ERVL 453 520 0 2443 248 107 15 chr12 98480997 98481812 -45800677 + MER97a DNA MER1_type 1 890 -4 398 270 65 43 chr12 98481974 98482159 -45800330 - MIR SINE MIR -38 224 36 213 154 0 0 chr12 98482366 98482405 -45800084 + A-rich Low_complexity Low_complexity 1 39 0 529 194 0 0 chr12 98482754 98482847 -45799642 + MER5A DNA MER1_type 14 106 -83 519 220 25 8 chr12 98482997 98483115 -45799374 + MIR SINE MIR 65 184 -78 210 139 0 0 chr12 98483650 98483686 -45798803 + (TG)n Simple_repeat Simple_repeat 1 36 0 2241 118 0 0 chr12 98484516 98484812 -45797677 + AluSx SINE Alu 4 299 -13 2405 74 0 0 chr12 98486064 98486363 -45796126 + AluY SINE Alu 2 300 -11 203 152 0 0 chr12 98486419 98486452 -45796037 + MIR SINE MIR 2 34 -228 573 230 46 61 chr12 98486480 98486676 -45795813 + MIR SINE MIR 30 222 -40 314 211 132 53 chr12 98486765 98486879 -45795610 + L2 LINE L2 3191 3313 0 267 337 41 0 chr12 98486877 98486975 -45795514 + L3 LINE CR1 1471 1572 -5 * 542 112 0 11 chr12 98487058 98487147 -45795342 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 1060 77 0 27 chr12 98487148 98487331 -45795158 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 251 333 81 0 chr12 98488605 98488704 -45793785 - MIR SINE MIR -57 151 45 924 252 17 43 chr12 98488783 98489013 -45793476 - MER58A DNA MER1_type 0 224 1 743 304 46 4 chr12 98489179 98489419 -45793070 + MIR SINE MIR 8 257 -5 1231 266 102 19 chr12 98489519 98489981 -45792508 - MLT1G1 LTR MaLR 0 595 96 333 304 28 98 chr12 98490111 98490325 -45792164 - MLT1G1-int LTR MaLR -140 1231 1033 226 328 48 24 chr12 98490421 98490546 -45791943 - MLT1G1-int LTR MaLR -487 884 757 541 301 32 14 chr12 98490894 98491113 -45791376 - MLT1G1-int LTR MaLR -829 542 320 248 299 24 16 chr12 98491114 98491241 -45791248 - MLT1G1-int LTR MaLR -1222 149 22 246 140 120 0 chr12 98491287 98491337 -45791152 - MLT1G1 LTR MaLR -26 569 514 * 1671 106 178 17 chr12 98491336 98491628 -45790861 - MSTA LTR MaLR -89 339 1 26 30 0 0 chr12 98492220 98492253 -45790236 + AT_rich Low_complexity Low_complexity 1 33 0 228 277 117 0 chr12 98492564 98492658 -45789831 + L2 LINE L2 3150 3254 -18 776 337 88 14 chr12 98492851 98493269 -45789220 - LTR16A LTR ERVL -1 449 1 251 186 0 17 chr12 98493314 98493373 -45789116 + CT-rich Low_complexity Low_complexity 3 60 0 1245 191 9 0 chr12 98493378 98493598 -45788891 - AluJo SINE Alu -6 306 85 210 231 0 19 chr12 98494498 98494550 -45787939 + L2 LINE L2 3263 3313 0 348 232 37 0 chr12 98494582 98494664 -45787825 - Tigger5 DNA MER2_type 0 2323 2239 397 90 51 0 chr12 98494683 98494761 -45787728 + CT-rich Low_complexity Low_complexity 1 82 0 712 219 0 8 chr12 98494761 98494884 -45787605 - FLAM_C SINE Alu -19 124 3 1849 219 21 21 chr12 98495102 98495476 -45787013 - MLT1A2 LTR MaLR 0 374 1 323 303 115 12 chr12 98496323 98496488 -45786001 + MIR SINE MIR 81 262 0 307 259 53 65 chr12 98496786 98496956 -45785533 + MIR SINE MIR 81 248 -14 853 226 17 69 chr12 98496986 98497415 -45785074 + MLT1A2 LTR MaLR 1 366 -8 206 320 67 34 chr12 98497872 98498050 -45784439 - MIR3 SINE MIR -6 202 19 258 143 0 20 chr12 98498260 98498309 -45784180 - LTR23-int LTR ERV1 -1280 3843 3796 197 235 0 0 chr12 98498498 98498532 -45783957 - MIR SINE MIR -181 81 48 424 288 39 13 chr12 98499458 98499611 -45782878 + MIR SINE MIR 66 222 -40 682 260 29 6 chr12 98500344 98500517 -45781972 + MER5B DNA MER1_type 1 177 -1 276 236 45 89 chr12 98500544 98500624 -45781865 - L2 LINE L2 -182 3090 3019 2361 103 3 3 chr12 98500624 98500934 -45781555 - AluSx SINE Alu -2 310 1 276 236 45 89 chr12 98500934 98501010 -45781479 - L2 LINE L2 -253 3019 2941 255 204 0 0 chr12 98501800 98501854 -45780635 + GA-rich Low_complexity Low_complexity 3 56 0 204 368 23 53 chr12 98502006 98502177 -45780312 - MIR3 SINE MIR -21 187 22 395 280 73 7 chr12 98502750 98502900 -45779589 + MIR SINE MIR 77 236 -26 970 274 12 12 chr12 98502958 98503199 -45779290 - MIR SINE MIR -1 261 21 180 333 67 0 chr12 98503222 98503282 -45779207 - L2 LINE L2 -52 3261 3198 216 341 11 44 chr12 98503875 98503966 -45778523 + MIR SINE MIR 16 103 -105 474 269 87 51 chr12 98504336 98504611 -45777878 - MER102b DNA MER1_type -11 330 46 384 195 25 21 chr12 98504730 98504854 -45777635 - MER5B DNA MER1_type 0 178 2 483 18 0 0 chr12 98505920 98505976 -45776513 + (TC)n Simple_repeat Simple_repeat 2 57 0 1655 197 24 0 chr12 98507293 98507587 -45774902 + AluJo SINE Alu 1 301 -11 216 86 0 0 chr12 98507599 98507634 -45774855 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 267 353 34 8 chr12 98507763 98507882 -45774607 - L2 LINE L2 -5 3308 3187 553 195 0 76 chr12 98509379 98509497 -45772992 + MER81 DNA DNA 3 111 -3 488 293 47 43 chr12 98509501 98509754 -45772735 + L1MEc LINE L1 198 451 -5945 1321 198 60 117 chr12 98509755 98510225 -45772264 - MSTB2 LTR MaLR 0 457 15 669 296 39 8 chr12 98510229 98510486 -45772003 + L1MEc LINE L1 449 713 -5683 2417 284 46 27 chr12 98510561 98512128 -45770361 + L1MEc LINE L1 857 2453 -3943 2029 195 68 9 chr12 98512151 98512709 -45769780 + L1MEc LINE L1 2600 3190 -3025 456 308 72 20 chr12 98512717 98512912 -45769577 - MIR SINE MIR -11 251 47 181 116 23 23 chr12 98513008 98513051 -45769438 + (TA)n Simple_repeat Simple_repeat 1 43 0 326 292 58 52 chr12 98513420 98513574 -45768915 + MIR3 SINE MIR 25 179 -29 728 279 42 46 chr12 98513677 98513835 -45768654 + L2 LINE L2 2709 2867 -447 1708 159 21 108 chr12 98513835 98513910 -45768579 - MLT1B LTR MaLR 0 390 310 2146 125 0 0 chr12 98513910 98514224 -45768265 - AluSg SINE Alu 0 314 1 1708 159 21 108 chr12 98514224 98514574 -45767915 - MLT1B LTR MaLR -80 310 1 728 279 42 46 chr12 98514574 98514677 -45767812 + L2 LINE L2 2867 2969 -345 184 294 44 15 chr12 98514960 98515028 -45767461 - L2 LINE L2 -2 3270 3201 250 411 40 36 chr12 98515066 98515290 -45767199 - L2 LINE L2 -155 3117 2893 226 412 24 24 chr12 98515489 98515744 -45766745 - L2 LINE L2 -665 2649 2395 378 266 98 0 chr12 98516327 98516449 -45766040 - MIR SINE MIR -64 144 20 1354 98 107 104 chr12 98516838 98517071 -45765418 - MSTA LTR MaLR 0 428 197 1784 167 3 7 chr12 98517071 98517359 -45765130 + AluSx SINE Alu 1 287 -25 363 44 0 0 chr12 98517366 98517411 -45765078 + (CA)n Simple_repeat Simple_repeat 2 46 0 297 0 0 0 chr12 98517413 98517446 -45765043 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 * 378 91 0 0 chr12 98517445 98517500 -45764989 + (TG)n Simple_repeat Simple_repeat 2 56 0 1354 98 107 104 chr12 98517446 98517591 -45764898 - MSTA LTR MaLR -236 192 92 1234 174 126 16 chr12 98517803 98518120 -45764369 - MLT1A1 LTR MaLR -13 352 1 296 316 0 0 chr12 98518121 98518200 -45764289 - MER58A DNA MER1_type -28 79 1 472 234 239 12 chr12 98518240 98518407 -45764082 - MLT1A1 LTR MaLR 0 365 161 384 291 159 33 chr12 98518608 98518790 -45763699 + MIR SINE MIR 18 222 -40 351 299 43 70 chr12 98519569 98519756 -45762733 - MIR SINE MIR -44 218 37 546 192 112 0 chr12 98522261 98522386 -45760103 - MER7A DNA MER2_type -209 137 1 1754 155 19 0 chr12 98525223 98525532 -45756957 + L1MA6 LINE L1 5986 6300 0 21 57 0 0 chr12 98525532 98525567 -45756922 + AT_rich Low_complexity Low_complexity 1 35 0 727 176 0 24 chr12 98525624 98525749 -45756740 + FLAM_A SINE Alu 1 122 -20 207 322 35 26 chr12 98527416 98527531 -45754958 + L3 LINE CR1 695 810 -767 322 283 50 36 chr12 98527702 98527884 -45754605 - MIR SINE MIR 0 262 35 389 330 87 32 chr12 98527921 98528139 -45754350 + L3 LINE CR1 1042 1271 -306 239 317 50 10 chr12 98528542 98528643 -45753846 - L2 LINE L2 -787 2527 2423 22 0 0 0 chr12 98528840 98528862 -45753627 + AT_rich Low_complexity Low_complexity 1 22 0 245 380 9 0 chr12 98528869 98528977 -45753512 - MIR3 SINE MIR 0 208 100 252 0 0 0 chr12 98529563 98529591 -45752898 + (TA)n Simple_repeat Simple_repeat 1 28 0 220 211 0 0 chr12 98530377 98530415 -45752074 + A-rich Low_complexity Low_complexity 3 40 0 349 226 21 0 chr12 98530950 98531043 -45751446 - MLT1J1 LTR MaLR -1 445 351 258 312 140 0 chr12 98531066 98531159 -45751330 - MLT1J2 LTR MaLR -142 308 203 220 319 0 0 chr12 98532644 98532713 -45749776 + MIR SINE MIR 194 262 0 1486 215 5 62 chr12 98532787 98533155 -45749334 + MLT1A1 LTR MaLR 1 347 -18 239 312 69 0 chr12 98534276 98534389 -45748100 + MER5A DNA MER1_type 4 139 -50 1578 201 54 16 chr12 98535545 98535913 -45746576 - MLT1B LTR MaLR 0 390 9 403 269 5 113 chr12 98536017 98536088 -45746401 - MER5A DNA MER1_type 0 189 112 1490 143 106 11 chr12 98536088 98536361 -45746128 + AluJb SINE Alu 2 300 -12 403 269 5 113 chr12 98536361 98536484 -45746005 - MER5A DNA MER1_type -77 112 3 292 368 38 15 chr12 98536621 98536754 -45745735 + L2 LINE L2 3137 3272 0 2210 127 3 16 chr12 98536809 98537125 -45745364 + AluSx SINE Alu 1 312 0 205 263 30 83 chr12 98537226 98537359 -45745130 + L2 LINE L2 2857 2982 -290 244 286 152 18 chr12 98537500 98537612 -45744877 + L2 LINE L2 3179 3305 -8 364 325 57 16 chr12 98537638 98537761 -45744728 + L2 LINE L2 3136 3263 -9 21 0 0 0 chr12 98539057 98539078 -45743411 + AT_rich Low_complexity Low_complexity 1 21 0 1203 239 46 30 chr12 98539159 98539382 -45743107 + MLT1E LTR MaLR 203 436 -157 2254 160 21 8 chr12 98539382 98539764 -45742725 + MLT1B LTR MaLR 1 387 -3 1203 239 46 30 chr12 98539764 98539908 -45742581 + MLT1E LTR MaLR 436 576 -17 2022 154 33 0 chr12 98539922 98540254 -45742235 + MER7A DNA MER2_type 5 345 -1 445 240 48 0 chr12 98540737 98540862 -45741627 + MER69 DNA AcHobo 2384 2514 -12 209 30 61 0 chr12 98541389 98541422 -45741067 + T-rich Low_complexity Low_complexity 2 36 0 775 143 0 8 chr12 98542247 98542373 -45740116 + AluSq/x SINE Alu 1 125 -187 22 0 0 0 chr12 98543504 98543526 -45738963 + AT_rich Low_complexity Low_complexity 1 22 0 29 37 0 19 chr12 98544226 98544243 -45738246 + AT_rich Low_complexity Low_complexity 1 17 -36 2117 132 0 0 chr12 98544243 98544538 -45737951 - AluSx SINE Alu -17 295 1 29 37 0 19 chr12 98544538 98544574 -45737915 + AT_rich Low_complexity Low_complexity 17 53 0 292 279 48 48 chr12 98545678 98545782 -45736707 + L2 LINE L2 3178 3281 -32 610 249 109 12 chr12 98545880 98546045 -45736444 - MIR SINE MIR -27 235 55 278 349 40 6 chr12 98546304 98546479 -45736010 + MLT1L LTR MaLR 88 268 -347 233 311 61 48 chr12 98546555 98546783 -45735706 + MLT1K LTR MaLR 332 562 -26 2282 102 0 0 chr12 98546834 98547129 -45735360 + AluSg SINE Alu 1 295 -15 325 229 143 57 chr12 98547695 98547870 -45734619 + MIR SINE MIR 28 217 -45 717 227 149 56 chr12 98548620 98549048 -45733441 - MLT1J LTR MaLR -10 605 25 372 43 0 0 chr12 98549200 98549246 -45733243 + (TA)n Simple_repeat Simple_repeat 1 46 0 493 198 83 32 chr12 98550714 98550871 -45731618 + MER33 DNA MER1_type 5 169 -155 261 254 75 0 chr12 98551452 98551519 -45730970 + MIR3 SINE MIR 134 205 -3 1878 176 0 0 chr12 98552074 98552375 -45730114 + AluJb SINE Alu 1 301 -11 775 253 11 6 chr12 98552770 98552952 -45729537 - MER5A DNA MER1_type 0 189 7 210 118 0 0 chr12 98553571 98553605 -45728884 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 343 284 0 20 chr12 98553840 98553942 -45728547 + MLT1K LTR MaLR 167 266 -322 1868 151 19 45 chr12 98553949 98554261 -45728228 - AluSq SINE Alu -7 306 3 192 318 9 75 chr12 98554311 98554418 -45728071 - L2 LINE L2 -985 2329 2230 670 315 86 18 chr12 98554433 98554827 -45727662 + MLT1J1 LTR MaLR 24 444 -2 797 272 20 12 chr12 98554832 98555078 -45727411 - L2 LINE L2 -1086 2228 1981 1204 249 98 59 chr12 98555220 98555742 -45726747 + MLT1F LTR MaLR 1 542 0 545 344 188 12 chr12 98555834 98556290 -45726199 - L2 LINE L2 -4 3309 2764 481 348 52 17 chr12 98556491 98556774 -45725715 - L2 LINE L2 -325 2988 2699 259 328 50 17 chr12 98557342 98557461 -45725028 - MIR SINE MIR -117 145 23 2175 99 10 0 chr12 98557941 98558233 -45724256 + AluSg SINE Alu 1 295 -15 1828 164 0 7 chr12 98558449 98558729 -45723760 + AluJb SINE Alu 24 301 -11 27 0 0 0 chr12 98558729 98558756 -45723733 + AT_rich Low_complexity Low_complexity 1 27 0 266 266 111 63 chr12 98558817 98559024 -45723465 + MLT1L LTR MaLR 27 243 -372 198 143 0 0 chr12 98561350 98561385 -45721104 + (CA)n Simple_repeat Simple_repeat 2 36 0 1791 187 0 0 chr12 98561462 98561777 -45720712 - AluJb SINE Alu 0 315 1 225 94 0 0 chr12 98562178 98562210 -45720279 + (TG)n Simple_repeat Simple_repeat 2 33 0 201 109 0 65 chr12 98562659 98562705 -45719784 + (TGGGGG)n Simple_repeat Simple_repeat 6 48 0 669 374 45 15 chr12 98562839 98563171 -45719318 - L2 LINE L2 0 3272 2931 269 231 39 48 chr12 98563914 98564018 -45718471 - MER113 DNA MER1_type? -412 109 7 1956 223 48 29 chr12 98564470 98565027 -45717462 + MER74B LTR ERVL 55 622 0 2007 128 3 20 chr12 98565034 98565332 -45717157 + AluSg SINE Alu 1 293 -17 373 298 53 18 chr12 98565696 98565867 -45716622 - MLT1J2 LTR MaLR -7 443 267 247 230 40 14 chr12 98565968 98566042 -45716447 - MLT1J LTR MaLR -334 177 102 582 300 153 29 chr12 98566589 98567194 -45715295 + L2 LINE L2 2611 3291 -22 213 39 0 0 chr12 98567200 98567226 -45715263 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 637 282 94 26 chr12 98567917 98568226 -45714263 + MLT1I LTR MaLR 80 409 0 28 61 0 0 chr12 98568862 98568911 -45713578 + AT_rich Low_complexity Low_complexity 1 49 0 423 340 10 50 chr12 98570221 98570421 -45712068 - MIR3 SINE MIR -9 199 8 2158 99 14 0 chr12 98571285 98571567 -45710922 + AluSc SINE Alu 20 305 -4 617 170 20 39 chr12 98571575 98571728 -45710761 - L1MA3 LINE L1 0 6305 6156 2068 105 82 103 chr12 98572045 98572482 -45710007 - MSTA LTR MaLR 0 428 1 360 0 0 0 chr12 98572587 98572627 -45709862 + (TG)n Simple_repeat Simple_repeat 1 40 0 342 0 0 0 chr12 98572626 98572664 -45709825 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 558 275 129 38 chr12 98573070 98573310 -45709179 + MIR SINE MIR 1 262 0 180 77 0 0 chr12 98573945 98573971 -45708518 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1027 257 95 27 chr12 98574948 98575349 -45707140 + MLT1J2 LTR MaLR 9 436 -14 710 146 310 6 chr12 98575582 98575753 -45706736 + MER58A DNA MER1_type 2 224 0 1062 63 23 17 chr12 98576266 98576441 -45706048 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1487 169 45 63 chr12 98576488 98576867 -45705622 - MLT1A2 LTR MaLR 0 374 3 931 328 106 13 chr12 98576911 98577366 -45705123 - L2 LINE L2 0 3313 2817 311 276 26 17 chr12 98577542 98577658 -45704831 + L1ME LINE L1 5550 5666 -455 1858 188 0 17 chr12 98577850 98578207 -45704282 + MLT1A1 LTR MaLR 15 365 0 2459 131 3 8 chr12 98578553 98578919 -45703570 + THE1B LTR MaLR 1 364 0 386 271 20 44 chr12 98579364 98579720 -45702769 + L1MCc LINE L1 1263 1780 -4961 1324 319 16 2 chr12 98579725 98580176 -45702313 + LTR16B LTR ERVL 6 462 -2 1593 181 0 59 chr12 98580284 98580604 -45701885 + AluJo SINE Alu 1 301 -11 764 321 73 29 chr12 98580676 98581483 -45701006 + L1MCc LINE L1 1978 2820 -4302 1386 216 3 21 chr12 98581594 98581881 -45700608 - AluJo SINE Alu -30 282 1 257 234 131 51 chr12 98581967 98582104 -45700385 + MER112 DNA MER1_type 106 253 -7 376 279 75 102 chr12 98582104 98582358 -45700131 - MIR SINE MIR -14 248 2 355 301 42 73 chr12 98582909 98583168 -45699321 - L3b LINE CR1 -231 1352 1102 1838 120 105 12 chr12 98583285 98583609 -45698880 + MER46B DNA MER2_type 1 229 -7 1396 212 98 45 chr12 98584611 98585030 -45697459 + MLT2B1 LTR ERVL 15 455 -65 345 319 0 0 chr12 98585034 98585125 -45697364 + L1MC4 LINE L1 6613 6703 -1339 209 139 23 0 chr12 98585228 98585271 -45697218 + CT-rich Low_complexity Low_complexity 2 45 0 271 279 0 0 chr12 98585274 98585342 -45697147 + (TATG)n Simple_repeat Simple_repeat 3 70 0 239 264 42 0 chr12 98585342 98585414 -45697075 - L1MC4 LINE L1 -131 7911 7837 613 355 144 25 chr12 98585809 98586627 -45695862 - L2 LINE L2 -501 2813 1883 1025 170 14 58 chr12 98586627 98586850 -45695639 - MER20 DNA MER1_type -4 215 3 613 355 144 25 chr12 98586850 98586904 -45695585 - L2 LINE L2 -1431 1883 1837 196 345 164 74 chr12 98587933 98588593 -45693896 - L2 LINE L2 -1534 1780 1062 1121 154 0 12 chr12 98588609 98588778 -45693711 - AluJb SINE Alu -1 311 145 22 56 0 0 chr12 98588935 98588971 -45693518 + AT_rich Low_complexity Low_complexity 1 36 0 412 254 28 30 chr12 98589126 98589365 -45693124 + L1MC4a LINE L1 5266 5509 -612 427 274 70 57 chr12 98589527 98589655 -45692834 + L1MC4a LINE L1 5674 5808 -2000 3710 135 32 66 chr12 98589655 98590366 -45692123 - LTR8 LTR ERV1 -4 687 1 427 274 70 57 chr12 98590366 98590467 -45692022 + L1MC4a LINE L1 5808 5906 -1902 2152 162 3 16 chr12 98591527 98591897 -45690592 - MLT1A1 LTR MaLR 0 365 1 180 211 0 0 chr12 98592142 98592180 -45690309 - L2 LINE L2 -7 3306 3269 22 35 0 0 chr12 98593579 98593608 -45688881 + AT_rich Low_complexity Low_complexity 1 29 0 257 371 66 0 chr12 98593960 98594111 -45688378 + MIR SINE MIR 57 217 -45 190 292 26 19 chr12 98594142 98594210 -45688279 - MIR SINE MIR -132 76 8 1555 95 0 86 chr12 98594403 98594646 -45687843 + AluSg/x SINE Alu 83 304 -6 2186 125 0 0 chr12 98594953 98595250 -45687239 + AluSg1 SINE Alu 1 297 -12 232 293 19 38 chr12 98595545 98595651 -45686838 + L2 LINE L2 3210 3313 0 621 333 65 12 chr12 98596186 98596432 -45686057 + MIR SINE MIR 4 262 0 219 322 0 0 chr12 98597650 98597709 -45684780 + MIR SINE MIR 82 140 -68 181 265 0 0 chr12 98598245 98598279 -45684210 - L2 LINE L2 -18 3295 3262 * 757 225 63 11 chr12 98598249 98598440 -45684049 - MIR SINE MIR -16 246 46 2023 102 63 7 chr12 98599033 98599317 -45683172 - AluY SINE Alu -11 300 1 2168 68 0 68 chr12 98599335 98599645 -45682844 - AluY SINE Alu -22 289 1 324 0 0 0 chr12 98599761 98599797 -45682692 + (TG)n Simple_repeat Simple_repeat 1 36 0 347 298 13 60 chr12 98600808 98600929 -45681560 + MIR3 SINE MIR 38 152 -56 871 189 102 15 chr12 98600929 98601135 -45681354 + MER58A DNA MER1_type 1 224 0 347 298 13 60 chr12 98601135 98601164 -45681325 + MIR3 SINE MIR 152 181 -27 207 163 41 20 chr12 98601313 98601362 -45681127 + MER5B DNA MER1_type 1 50 -128 331 100 33 33 chr12 98601368 98601428 -45681061 - U13 snRNA snRNA -26 78 19 284 315 0 22 chr12 98601447 98601539 -45680950 - MER5B DNA MER1_type -52 126 37 2125 123 23 10 chr12 98601540 98601842 -45680647 + AluSx SINE Alu 1 306 -6 1145 153 0 0 chr12 98601842 98602005 -45680484 + AluSg/x SINE Alu 134 296 -16 2427 131 7 12 chr12 98602060 98602480 -45680009 + L1MA8 LINE L1 5718 6135 -156 267 295 33 66 chr12 98602655 98602777 -45679712 + MER5B DNA MER1_type 46 163 -15 217 392 0 0 chr12 98602884 98602963 -45679526 + L2 LINE L2 3189 3267 -5 227 300 0 0 chr12 98605214 98605274 -45677215 - L2 LINE L2 -8 3264 3205 227 293 27 0 chr12 98605396 98605471 -45677018 + MER5A DNA MER1_type 26 102 -87 2198 57 0 0 chr12 98605682 98605945 -45676544 - AluY SINE Alu -7 304 42 2036 133 3 31 chr12 98606371 98606693 -45675796 + AluSq SINE Alu 1 313 0 747 232 36 52 chr12 98606970 98607220 -45675269 - MIR SINE MIR -2 260 15 267 156 0 0 chr12 98607966 98608011 -45674478 - L2 LINE L2 0 3313 3269 196 316 86 32 chr12 98608604 98608791 -45673698 + L2 LINE L2 1285 1481 -1833 355 292 111 37 chr12 98609534 98609750 -45672739 - MIR SINE MIR -9 253 22 378 0 0 0 chr12 98609784 98609826 -45672663 + (TG)n Simple_repeat Simple_repeat 2 43 0 509 261 144 65 chr12 98611609 98611960 -45670529 + L2 LINE L2 2649 3063 -250 2198 123 0 7 chr12 98611960 98612262 -45670227 + AluSx SINE Alu 1 300 -12 509 261 144 65 chr12 98612262 98612470 -45670019 + L2 LINE L2 3063 3253 -60 548 302 58 41 chr12 98612905 98613196 -45669293 + L2 LINE L2 3017 3312 -1 695 338 98 38 chr12 98613504 98614134 -45668355 - L2 LINE L2 -913 2401 1734 283 216 12 22 chr12 98614167 98614253 -45668236 + L1MA10 LINE L1 6097 6332 -1 955 262 11 19 chr12 98615653 98615916 -45666573 - MIR SINE MIR 0 262 2 298 229 0 14 chr12 98615916 98615986 -45666503 + L2 LINE L2 2572 2640 -674 28 0 0 0 chr12 98616007 98616035 -45666454 + AT_rich Low_complexity Low_complexity 1 28 0 2899 102 13 0 chr12 98616200 98616591 -45665898 - L1PA13 LINE L1 -4 6159 5764 453 304 47 0 chr12 98617115 98617263 -45665226 + L2 LINE L2 3159 3313 0 636 244 70 39 chr12 98617401 98617494 -45664995 + MIR SINE MIR 20 109 -153 2746 151 9 19 chr12 98617494 98617924 -45664565 + MSTB LTR MaLR 1 426 0 636 244 70 39 chr12 98617924 98618059 -45664430 + MIR SINE MIR 109 255 -7 276 207 45 0 chr12 98619393 98619504 -45662985 + (TA)n Simple_repeat Simple_repeat 2 117 0 29 0 0 0 chr12 98620159 98620188 -45662301 + AT_rich Low_complexity Low_complexity 1 29 0 6109 94 14 23 chr12 98621601 98622472 -45660017 + L1PA15 LINE L1 5280 6142 -23 315 331 23 30 chr12 98622472 98622605 -45659884 + MIR SINE MIR 52 183 -79 319 294 44 29 chr12 98622833 98622969 -45659520 + HAL1 LINE L1 1 138 -2369 615 287 89 94 chr12 98623280 98623667 -45658822 + HAL1 LINE L1 814 1201 -1306 7137 64 17 0 chr12 98623667 98624680 -45657809 + L1PA7 LINE L1 5106 6138 -16 615 287 89 94 chr12 98624680 98625232 -45657257 + HAL1 LINE L1 1201 1749 -758 279 248 117 29 chr12 98625414 98625551 -45656938 + HAL1 LINE L1 2027 2175 -332 320 245 57 9 chr12 98625759 98625865 -45656624 + HAL1 LINE L1 1441 1551 -956 467 239 99 42 chr12 98626014 98626227 -45656262 + HAL1 LINE L1 2246 2470 -37 481 283 81 88 chr12 98627951 98628154 -45654335 - Charlie8 DNA MER1_type -1997 420 218 2159 124 0 10 chr12 98628154 98628461 -45654028 + AluSc SINE Alu 2 305 -4 481 283 81 88 chr12 98628461 98628565 -45653924 - Charlie8 DNA MER1_type -2199 218 115 526 312 65 81 chr12 98628668 98629037 -45653452 + L2 LINE L2 2907 3269 -3 299 285 262 0 chr12 98629136 98629308 -45653181 + MIR SINE MIR 46 262 0 287 270 233 21 chr12 98629756 98629945 -45652544 + MIR SINE MIR 22 250 -12 345 217 270 35 chr12 98630678 98630904 -45651585 - LTR67 LTR ERVL -28 529 251 323 252 50 13 chr12 98631580 98631683 -45650806 - MER20B DNA MER1_type 0 219 103 226 274 189 11 chr12 98631917 98632012 -45650477 + MIR SINE MIR 37 148 -60 468 200 67 9 chr12 98632012 98632117 -45650372 - LTR16A1 LTR ERVL 0 457 347 2216 98 0 3 chr12 98632506 98632791 -45649698 + AluSg1 SINE Alu 1 284 -25 381 198 0 0 chr12 98632794 98632875 -45649614 + (TATG)n Simple_repeat Simple_repeat 4 84 0 255 106 0 0 chr12 98632876 98632923 -45649566 + LTR66 LTR ERVL 393 439 -171 210 328 60 0 chr12 98633122 98633189 -45649300 + MIR SINE MIR 36 106 -102 3187 60 3 0 chr12 98633445 98633828 -45648661 - L1PA5 LINE L1 -1 6153 5770 7987 38 0 0 chr12 98634072 98635171 -45647318 - L1PA4 LINE L1 0 6155 5057 2323 77 0 14 chr12 98635205 98635502 -45646987 + AluY SINE Alu 1 293 -18 431 128 117 0 chr12 98635797 98635891 -45646598 + L1 LINE L1 5175 5279 -867 2424 89 0 0 chr12 98636270 98636572 -45645917 - AluY SINE Alu -9 302 1 228 111 0 0 chr12 98636640 98636676 -45645813 + (CA)n Simple_repeat Simple_repeat 1 36 0 323 339 16 31 chr12 98636690 98636817 -45645672 - L2 LINE L2 -7 3265 3141 476 270 53 7 chr12 98638009 98638161 -45644328 + MIR SINE MIR 63 221 -41 194 368 53 21 chr12 98638562 98638657 -45643832 + L2 LINE L2 3164 3261 -11 22 0 0 0 chr12 98640010 98640032 -45642457 + AT_rich Low_complexity Low_complexity 1 22 0 864 234 121 19 chr12 98640409 98640674 -45641815 + MLT1H LTR MaLR 245 536 -13 445 273 27 0 chr12 98641215 98641325 -45641164 + LTR16C LTR ERVL 373 485 -6 287 336 101 25 chr12 98641480 98641846 -45640643 + L2 LINE L2 2584 2977 -337 282 344 47 31 chr12 98642243 98642371 -45640118 + L2 LINE L2 3134 3263 -9 1627 174 7 4 chr12 98642731 98643007 -45639482 + AluJo SINE Alu 1 277 -35 620 255 13 13 chr12 98643415 98643526 -45638963 + MER58 DNA MER1_type 1 114 -2306 2139 129 0 0 chr12 98643526 98643820 -45638669 + AluSx SINE Alu 1 294 -18 620 255 13 13 chr12 98643820 98643857 -45638632 + MER58 DNA MER1_type 113 149 -2271 860 321 95 11 chr12 98644223 98644591 -45637898 + L3 LINE CR1 1174 1572 -5 2232 116 0 0 chr12 98644660 98644961 -45637528 + AluSc SINE Alu 1 301 -8 2273 88 7 0 chr12 98644961 98645245 -45637244 + AluSg SINE Alu 1 286 -24 189 316 9 79 chr12 98646870 98646984 -45635505 + MIR SINE MIR 2 107 -155 1280 250 159 42 chr12 98647349 98648010 -45634479 + Charlie7 DNA MER1_type 1 738 -1874 2280 129 134 8 chr12 98648023 98648403 -45634086 - MSTA LTR MaLR 0 428 1 2265 107 3 0 chr12 98648538 98648838 -45633651 + AluSx SINE Alu 1 301 -11 1734 211 57 14 chr12 98648974 98649324 -45633165 - MLT1A1 LTR MaLR 0 365 1 373 277 194 0 chr12 98649653 98649808 -45632681 - LTR33 LTR ERVL -331 190 6 553 309 140 40 chr12 98649860 98650338 -45632151 - L2 LINE L2 0 3313 2776 515 360 31 23 chr12 98650421 98650682 -45631807 + L2 LINE L2 2920 3182 -90 909 258 29 17 chr12 98651044 98651284 -45631205 - MIR SINE MIR 0 262 20 2257 92 3 10 chr12 98651344 98651648 -45630841 - AluSc SINE Alu -7 302 1 2190 125 9 12 chr12 98651650 98651978 -45630511 - L1PA15 LINE L1 0 6165 5839 204 316 76 13 chr12 98652368 98652447 -45630042 + MIR3 SINE MIR 104 187 -21 193 319 246 0 chr12 98653061 98653130 -45629359 + MIR3 SINE MIR 75 160 -48 301 290 71 30 chr12 98654400 98654569 -45627920 - MER117 DNA MER1_type -21 176 1 24 32 0 0 chr12 98654766 98654797 -45627692 + AT_rich Low_complexity Low_complexity 1 31 0 386 290 118 43 chr12 98654979 98655234 -45627255 + L2 LINE L2 2402 2675 -639 190 258 33 75 chr12 98655349 98655469 -45627020 - MER5C DNA MER1_type -209 115 1 * 231 289 33 133 chr12 98655469 98655674 -45626815 + L2 LINE L2 2793 2976 -338 1899 153 49 25 chr12 98655712 98656078 -45626411 - THE1C LTR MaLR 0 375 1 9322 132 31 34 chr12 98656078 98657660 -45624829 - THE1C-int LTR MaLR 0 1580 3 1634 136 46 85 chr12 98657662 98657972 -45624517 - THE1C LTR MaLR 0 375 81 3990 119 49 12 chr12 98657972 98658562 -45623927 + LTR9 LTR ERV1 1 612 0 1634 136 46 85 chr12 98658562 98658640 -45623849 - THE1C LTR MaLR -294 81 2 230 225 0 0 chr12 98658764 98658804 -45623685 + L2 LINE L2 3136 3175 -97 3390 125 15 28 chr12 98661670 98662206 -45620283 + MER1A DNA MER1_type 1 529 0 23 33 0 0 chr12 98662845 98662875 -45619614 + AT_rich Low_complexity Low_complexity 1 30 0 180 300 17 33 chr12 98662969 98663029 -45619460 - MIR SINE MIR -136 126 68 603 346 41 8 chr12 98663354 98663597 -45618892 - MIR SINE MIR 0 262 12 180 0 0 0 chr12 98665034 98665054 -45617435 + (A)n Simple_repeat Simple_repeat 1 20 0 238 283 109 0 chr12 98665375 98665467 -45617022 + MIR SINE MIR 55 156 -106 2151 122 0 55 chr12 98665546 98665873 -45616616 - AluSx SINE Alu -3 309 1 184 354 0 0 chr12 98665957 98666005 -45616484 - L2 LINE L2 -88 3184 3137 552 285 146 0 chr12 98666075 98666233 -45616256 - MER5A DNA MER1_type 0 189 9 311 262 55 114 chr12 98666863 98667100 -45615389 + MER102a DNA MER1_type 98 320 -10 442 304 175 0 chr12 98668494 98668688 -45613801 + MIR SINE MIR 14 241 -21 491 229 110 69 chr12 98669572 98669790 -45612699 + L2 LINE L2 3082 3308 -5 180 372 43 43 chr12 98669784 98669878 -45612611 - L2 LINE L2 -221 3051 2958 * 24 67 0 0 chr12 98669987 98670032 -45612457 + AT_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr12 98670591 98670627 -45611862 + AT_rich Low_complexity Low_complexity 1 36 0 259 219 27 0 chr12 98671975 98672048 -45610441 + (TA)n Simple_repeat Simple_repeat 2 76 0 21 71 0 0 chr12 98672462 98672504 -45609985 + AT_rich Low_complexity Low_complexity 1 42 0 190 352 0 0 chr12 98673308 98673362 -45609127 - MIR SINE MIR -6 256 203 3794 164 23 19 chr12 98673681 98673722 -45608767 + ERVL LTR ERVL 3021 3060 -2704 2232 115 10 0 chr12 98673722 98674027 -45608462 + AluY SINE Alu 1 308 -3 3794 164 23 19 chr12 98674027 98674673 -45607816 + ERVL LTR ERVL 3060 3711 -2053 6646 158 31 14 chr12 98674766 98675945 -45606544 + ERVL LTR ERVL 3714 4913 -851 1441 213 77 23 chr12 98675960 98676349 -45606140 - MER21B LTR ERV1 -51 812 403 1896 155 76 55 chr12 98676376 98676796 -45605693 - LTR3 LTR ERVK 0 429 1 419 147 0 0 chr12 98676808 98676876 -45605613 - HERVK14 LTR ERVK -58 5887 5820 344 161 0 0 chr12 98676893 98676955 -45605534 - HERVK14 LTR ERVK -425 5520 5459 * 2360 182 7 7 chr12 98676950 98677401 -45605088 - HERVK3 LTR ERVK -4934 2309 1859 553 88 33 22 chr12 98677393 98677484 -45605005 - HERVK3 LTR ERVK -5826 1417 1326 * 459 231 0 29 chr12 98677478 98677582 -45604907 - HERVK3 LTR ERVK -6563 680 580 * 596 191 80 98 chr12 98677641 98677866 -45604623 - HERVK3 LTR ERVK -6971 272 52 3293 80 0 9 chr12 98678155 98678605 -45603884 - LTR3b LTR ERVK -54 446 1 707 272 86 37 chr12 98678637 98678905 -45603584 - MER21B LTR ERV1 -496 367 87 24 53 0 0 chr12 98678970 98679008 -45603481 + AT_rich Low_complexity Low_complexity 1 38 0 210 371 76 23 chr12 98679033 98679165 -45603324 - MIR3 SINE MIR -64 144 6 796 169 75 41 chr12 98679287 98679625 -45602864 + MSTD LTR MaLR 3 396 0 527 221 18 68 chr12 98679625 98679788 -45602701 + L2 LINE L2 3159 3313 0 216 143 0 0 chr12 98680353 98680395 -45602094 + (TA)n Simple_repeat Simple_repeat 1 42 0 1912 172 26 28 chr12 98681196 98681585 -45600904 + MLT1B LTR MaLR 1 388 -2 1166 292 57 29 chr12 98681680 98682297 -45600192 - Tigger8 DNA MER2_type -3 663 30 230 292 208 21 chr12 98682465 98682609 -45599880 - L2 LINE L2 -11 3302 3132 1823 160 30 39 chr12 98683047 98683409 -45599080 + MLT1A1 LTR MaLR 1 359 -6 407 312 25 13 chr12 98683609 98683766 -45598723 - MIR3 SINE MIR -1 207 49 530 259 171 23 chr12 98683831 98684047 -45598442 + MIR SINE MIR 1 248 -14 28 29 0 0 chr12 98685302 98685337 -45597152 + AT_rich Low_complexity Low_complexity 1 35 0 1849 149 33 24 chr12 98685481 98685816 -45596673 - MER44D DNA MER2_type -1 608 1 317 293 128 6 chr12 98685899 98686063 -45596426 - MIR SINE MIR -39 223 40 219 69 0 0 chr12 98686342 98686371 -45596118 + (A)n Simple_repeat Simple_repeat 1 29 0 334 383 49 67 chr12 98686823 98687254 -45595235 - L2 LINE L2 -2 3270 2848 365 274 27 86 chr12 98687451 98687637 -45594852 - MIR SINE MIR -51 211 37 770 268 109 0 chr12 98688896 98689116 -45593373 + MIR SINE MIR 19 262 0 216 167 0 0 chr12 98689748 98689784 -45592705 + MER91B DNA MER1_type 33 68 -122 452 306 60 49 chr12 98690178 98690443 -45592046 + L2 LINE L2 3045 3312 -1 301 68 0 0 chr12 98690551 98690595 -45591894 + L1MC2 LINE L1 5660 5703 -2082 2056 158 39 21 chr12 98690599 98690980 -45591509 - MER61D LTR ERV1 0 501 114 2588 183 30 34 chr12 98691027 98691235 -45591254 + L1MC2 LINE L1 5710 5917 -427 1865 228 28 22 chr12 98691235 98691699 -45590790 - MLT1C LTR MaLR 0 467 1 2588 183 30 34 chr12 98691699 98692092 -45590397 + L1MC2 LINE L1 5917 6311 -33 2325 104 0 0 chr12 98692092 98692389 -45590100 + AluSc SINE Alu 1 297 -12 2588 183 30 34 chr12 98692389 98692413 -45590076 + L1MC2 LINE L1 6311 6334 -10 447 243 93 0 chr12 98692474 98692581 -45589908 + Tigger7 DNA MER2_type 1 117 -433 * 1822 166 32 3 chr12 98692578 98692916 -45589573 + Tigger7 DNA MER2_type 2238 2585 -2 25 0 0 0 chr12 98693178 98693203 -45589286 + AT_rich Low_complexity Low_complexity 1 25 0 1867 203 54 11 chr12 98693807 98694250 -45588239 + MLT1C LTR MaLR 6 467 0 281 337 47 70 chr12 98694413 98694534 -45587955 + L2 LINE L2 2582 2704 -610 2086 141 0 7 chr12 98694534 98694838 -45587651 + AluJb SINE Alu 1 302 -10 281 337 47 70 chr12 98694838 98694927 -45587562 + L2 LINE L2 2704 2787 -527 1295 232 16 63 chr12 98694927 98695310 -45587179 - MLT1A1 LTR MaLR 0 365 1 281 337 47 70 chr12 98695310 98695356 -45587133 + L2 LINE L2 2787 2833 -481 299 192 23 115 chr12 98695386 98695516 -45586973 + HAL1 LINE L1 1981 2098 -409 1627 189 92 54 chr12 98695570 98696035 -45586454 + MER68 LTR ERV1 1 483 -79 1828 180 7 66 chr12 98696044 98696455 -45586034 + MSTD LTR MaLR 10 396 0 414 222 37 0 chr12 98696455 98696536 -45585953 + MER68 LTR ERV1 479 562 0 319 241 90 42 chr12 98696618 98696784 -45585705 + HAL1 LINE L1 2282 2455 -52 36 62 0 0 chr12 98696797 98696861 -45585628 + AT_rich Low_complexity Low_complexity 1 64 0 599 217 192 0 chr12 98697514 98697717 -45584772 + L1MC4 LINE L1 6462 6703 -1339 272 245 21 21 chr12 98697673 98697767 -45584722 - L1MC4 LINE L1 -1335 6707 6614 * 552 193 29 21 chr12 98697802 98697942 -45584547 + L1MC4 LINE L1 6888 7028 -1014 2189 200 181 23 chr12 98697943 98698768 -45583721 + L1MC4 LINE L1 7099 8042 0 216 302 135 0 chr12 98698821 98698917 -45583572 - MIR SINE MIR -152 110 2 1304 163 4 49 chr12 98698925 98699239 -45583250 + L1MB8 LINE L1 5887 6175 -9 2522 161 45 0 chr12 98699358 98699799 -45582690 + LOR1b LTR ERV1 1 461 0 527 311 53 41 chr12 98700698 98700942 -45581547 + MIR SINE MIR 16 262 0 223 291 127 9 chr12 98701022 98701132 -45581357 + MIR SINE MIR 105 227 -35 1405 237 79 14 chr12 98701163 98701945 -45580544 + L1M1 LINE L1 2733 3566 -3999 2976 220 28 5 chr12 98702079 98702828 -45579661 + L1M1 LINE L1 3798 4563 -3002 933 251 5 5 chr12 98702828 98703039 -45579450 + AluJo SINE Alu 93 303 -9 2166 204 38 4 chr12 98703042 98703546 -45578943 + L1M1 LINE L1 4559 5079 -2486 222 186 17 34 chr12 98703546 98703605 -45578884 + (TATG)n Simple_repeat Simple_repeat 3 60 0 262 0 0 0 chr12 98703607 98703638 -45578851 - L1MA4 LINE L1 -109 6191 6161 275 212 0 30 chr12 98703650 98703716 -45578773 + (CA)n Simple_repeat Simple_repeat 2 65 0 2961 157 20 10 chr12 98703716 98704219 -45578270 + L1MA6 LINE L1 5789 6296 -4 817 211 46 11 chr12 98704736 98704911 -45577578 - MER5A DNA MER1_type -8 181 1 553 273 86 25 chr12 98705428 98705626 -45576863 - MIR SINE MIR -8 254 45 1264 107 31 2 chr12 98706797 98707012 -45575477 + L1MA4A LINE L1 6012 6234 -67 2684 171 12 0 chr12 98707013 98707440 -45575049 - MER57B LTR ERV1 0 434 3 1334 59 160 5 chr12 98707442 98707629 -45574860 - MER57B-int LTR ERV1 0 7537 7322 283 63 0 232 chr12 98707629 98707683 -45574806 + L1MA4A LINE L1 6231 6255 -48 2240 98 7 0 chr12 98707683 98707970 -45574519 - AluSq SINE Alu -24 289 1 283 63 0 232 chr12 98707970 98708010 -45574479 + L1MA4A LINE L1 6255 6303 0 528 250 48 0 chr12 98708039 98708163 -45574326 + MIR SINE MIR 108 237 -25 406 335 54 20 chr12 98708352 98708555 -45573934 + MIR SINE MIR 53 262 0 2108 106 0 7 chr12 98709463 98709765 -45572724 + AluSg SINE Alu 1 300 0 2507 70 3 0 chr12 98709870 98710172 -45572317 + AluY SINE Alu 1 303 -8 23 78 0 0 chr12 98710244 98710295 -45572194 + AT_rich Low_complexity Low_complexity 1 51 0 214 216 45 11 chr12 98710307 98710395 -45572094 + (TA)n Simple_repeat Simple_repeat 1 91 0 473 314 26 6 chr12 98710465 98710621 -45571868 - MIR SINE MIR -65 197 39 2401 102 52 19 chr12 98710720 98711082 -45571407 - THE1C LTR MaLR -1 374 1 384 261 144 0 chr12 98712869 98712980 -45569509 - L2 LINE L2 -1 3312 3186 190 328 101 34 chr12 98713023 98713142 -45569347 + MIR SINE MIR 20 146 -62 315 258 268 39 chr12 98713850 98714040 -45568449 - HAL1 LINE L1 -10 2497 2352 2157 109 7 0 chr12 98714040 98714333 -45568156 - AluSx SINE Alu -17 295 1 315 258 268 39 chr12 98714333 98714452 -45568037 - HAL1 LINE L1 -155 2352 2117 563 252 170 0 chr12 98714626 98714773 -45567716 - MER5A DNA MER1_type -6 183 12 954 224 9 42 chr12 98715390 98715604 -45566885 + MER63A DNA MER1_type 1 207 -3 2056 148 0 3 chr12 98715980 98716278 -45566211 - AluJb SINE Alu -15 297 1 909 251 211 29 chr12 98716564 98716966 -45565523 + MLT1H LTR MaLR 12 508 -41 1430 103 89 9 chr12 98716966 98717179 -45565310 + MER30 DNA MER1_type 1 230 0 909 251 211 29 chr12 98717179 98717231 -45565258 + MLT1H LTR MaLR 508 549 0 501 232 108 33 chr12 98717234 98717475 -45565014 + L1MC5 LINE L1 7496 7754 -207 481 204 28 111 chr12 98717508 98717724 -45564765 + L1MC5 LINE L1 7719 7916 -45 367 162 0 29 chr12 98718093 98718161 -45564328 - MLT1K LTR MaLR -9 579 514 305 252 0 37 chr12 98718169 98718276 -45564213 - MLT1J2 LTR MaLR -3 447 299 491 186 80 18 chr12 98718398 98718511 -45563978 - MLT1J2 LTR MaLR -328 122 3 2211 141 0 0 chr12 98718902 98719214 -45563275 - AluSx SINE Alu 0 312 1 186 314 79 36 chr12 98719412 98719552 -45562937 - L2 LINE L2 -300 2972 2827 1816 169 0 26 chr12 98720110 98720418 -45562071 + AluJb SINE Alu 1 300 -12 499 266 83 66 chr12 98721821 98722078 -45560411 + MIR SINE MIR 13 262 0 21 36 0 0 chr12 98722522 98722550 -45559939 + AT_rich Low_complexity Low_complexity 1 28 0 1582 165 4 29 chr12 98723532 98723805 -45558684 + AluJo SINE Alu 9 274 -38 484 55 14 14 chr12 98723854 98723927 -45558562 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 21 0 0 0 chr12 98725136 98725157 -45557332 + AT_rich Low_complexity Low_complexity 1 21 0 210 292 0 15 chr12 98725672 98725737 -45556752 + GA-rich Low_complexity Low_complexity 3 66 0 190 368 58 26 chr12 98726429 98726584 -45555905 + L2 LINE L2 2193 2352 -962 518 248 66 0 chr12 98726931 98727052 -45555437 + MER94 DNA DNA 1 129 -5 364 296 189 0 chr12 98727426 98727595 -45554894 + MIR SINE MIR 27 227 -35 4166 61 10 0 chr12 98727621 98728132 -45554357 + L1PA7 LINE L1 5619 6134 -20 2466 65 0 19 chr12 98728205 98728515 -45553974 - AluY SINE Alu -7 304 1 2165 106 3 0 chr12 98728967 98729321 -45553168 + AluSx SINE Alu 1 355 0 249 366 23 23 chr12 98729448 98729579 -45552910 - L2 LINE L2 -517 2797 2667 243 297 34 40 chr12 98729597 98729745 -45552744 + MER103 DNA DNA 18 164 -2 259 241 81 23 chr12 98730010 98730097 -45552392 - MIR SINE MIR -7 255 164 320 309 6 0 chr12 98730748 98730845 -45551644 - MIR SINE MIR -36 172 72 1269 254 73 47 chr12 98731397 98731954 -45550535 + MLT1F1 LTR MaLR 1 567 0 22 35 0 0 chr12 98732579 98732608 -45549881 + AT_rich Low_complexity Low_complexity 1 29 0 414 0 0 0 chr12 98732909 98732955 -45549534 + (CA)n Simple_repeat Simple_repeat 1 46 0 341 257 62 18 chr12 98733919 98734032 -45548457 + MIR SINE MIR 48 165 -97 3357 44 0 0 chr12 98734274 98734657 -45547832 - L1PA4 LINE L1 -3 6152 5770 45234 36 2 1 chr12 98734657 98740799 -45541690 - L1PA3 LINE L1 -2 6153 9 15737 28 0 3 chr12 98740804 98743036 -45539453 - L1PA4 LINE L1 -368 5787 3563 191 283 19 0 chr12 98743288 98743341 -45539148 + L2 LINE L2 3214 3267 -5 193 407 56 6 chr12 98743348 98743510 -45538979 - MIR SINE MIR -73 189 20 180 179 0 0 chr12 98743570 98743609 -45538880 + (TTA)n Simple_repeat Simple_repeat 2 40 0 471 279 50 34 chr12 98744477 98744740 -45537749 - L1ME4a LINE L1 -208 5913 5678 704 278 48 5 chr12 98745282 98745469 -45537020 - MER63A DNA MER1_type 0 210 16 2006 133 14 7 chr12 98745551 98745844 -45536645 - AluSx SINE Alu -17 295 1 498 317 27 11 chr12 98746770 98746953 -45535536 + MIR3 SINE MIR 19 204 -4 447 317 200 5 chr12 98747768 98747973 -45534516 + MIR SINE MIR 5 249 -13 4048 55 2 34 chr12 98748843 98749534 -45532955 + L1P2 LINE L1 4895 5545 -610 2644 113 8 4 chr12 98750066 98750442 -45532047 + THE1C LTR MaLR 1 426 0 303 281 163 38 chr12 98951942 98952230 -45330259 + L1MC5 LINE L1 7602 7925 -36 244 333 73 52 chr12 98955271 98955463 -45327026 - L3 LINE CR1 -351 1226 1031 1267 176 230 4 chr12 98956279 98956557 -45325932 + MER58B DNA MER1_type 1 341 0 270 241 319 17 chr12 98959213 98959329 -45323160 + MIR SINE MIR 1 151 -111 186 43 0 0 chr12 98959580 98959603 -45322886 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2261 91 0 7 chr12 98959766 98960051 -45322438 + AluSq SINE Alu 1 283 -30 182 250 0 0 chr12 98961320 98961360 -45321129 + L2 LINE L2 3222 3261 -11 2231 169 28 12 chr12 98961844 98962276 -45320213 + L1MD1 LINE L1 5795 6233 -9 5402 170 21 5 chr12 98962283 98963752 -45318737 + L1MB2 LINE L1 4679 6170 -1 192 175 25 0 chr12 98964229 98964269 -45318220 + L2 LINE L2 3272 3312 -1 2361 76 3 3 chr12 98965121 98965412 -45317077 - AluSx SINE Alu -20 292 2 1744 164 10 10 chr12 98967240 98967533 -45314956 - AluJo SINE Alu -19 293 1 375 347 35 23 chr12 98968592 98968765 -45313724 - MER5A DNA MER1_type -1 188 3 219 69 0 0 chr12 98968873 98968902 -45313587 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 992 83 0 0 chr12 98968902 98969023 -45313466 - AluSq/x SINE Alu -192 121 1 2089 192 3 3 chr12 98970190 98970555 -45311934 + MLT1A1 LTR MaLR 1 365 0 473 204 68 53 chr12 98970896 98971028 -45311461 - L2 LINE L2 0 3313 3180 499 316 82 67 chr12 98971161 98971610 -45310879 + L2 LINE L2 2817 3272 0 417 81 0 0 chr12 98972306 98972368 -45310121 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 561 314 100 41 chr12 98972391 98973193 -45309296 - L1M4 LINE L1 -789 5357 4497 186 254 0 0 chr12 98973389 98973456 -45309033 + (TG)n Simple_repeat Simple_repeat 2 68 0 433 307 16 0 chr12 98974220 98974347 -45308142 - L2 LINE L2 0 3313 3185 1072 291 98 24 chr12 98974523 98975096 -45307393 - L2 LINE L2 -874 2440 1826 639 304 52 11 chr12 98975363 98975633 -45306856 - L1ME LINE L1 -311 5810 5530 308 255 61 40 chr12 98975606 98975828 -45306661 - L1M2 LINE L1 -704 5447 5256 * 2144 114 3 10 chr12 98975874 98976171 -45306318 - AluSq SINE Alu -18 295 1 25 31 0 0 chr12 98976348 98976380 -45306109 + AT_rich Low_complexity Low_complexity 1 32 0 238 217 87 83 chr12 98976481 98976562 -45305927 - L1ME LINE L1 -1314 4832 4753 338 0 24 0 chr12 98976562 98976604 -45305885 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 238 217 87 83 chr12 98976604 98976752 -45305737 - L1ME LINE L1 -1393 4753 4602 214 162 0 0 chr12 98976878 98976915 -45305574 + T-rich Low_complexity Low_complexity 2 38 0 2472 68 0 3 chr12 98976957 98977253 -45305236 + AluSq SINE Alu 1 295 -18 22 35 0 0 chr12 98977625 98977654 -45304835 + AT_rich Low_complexity Low_complexity 1 29 0 1972 147 7 7 chr12 98977772 98978065 -45304424 + AluJo SINE Alu 5 297 -15 1372 84 0 0 chr12 98978119 98978285 -45304204 + AluSg/x SINE Alu 132 297 -15 7183 48 2 20 chr12 98978285 98979136 -45303353 + L1PA6 LINE L1 4938 5767 -387 2676 61 0 0 chr12 98979136 98979447 -45303042 + AluY SINE Alu 1 311 0 7183 48 2 20 chr12 98979447 98979828 -45302661 + L1PA6 LINE L1 5767 6153 -1 2821 13 0 0 chr12 98979856 98980162 -45302327 - AluYa5 SINE Alu -5 306 1 253 277 64 57 chr12 98980344 98980485 -45302004 - L1MC/D LINE L1 -1897 5911 5770 411 258 42 0 chr12 98982200 98982320 -45300169 + L2 LINE L2 3186 3310 -3 226 311 38 38 chr12 98984508 98984640 -45297849 + L2 LINE L2 3141 3272 0 22 0 0 0 chr12 98984906 98984928 -45297561 + AT_rich Low_complexity Low_complexity 1 22 0 323 241 259 12 chr12 98986084 98986246 -45296243 - MIR SINE MIR -26 236 35 600 285 41 14 chr12 98987736 98987957 -45294532 - MIR SINE MIR -34 228 2 1901 169 77 29 chr12 98987991 98988369 -45294120 - MSTD LTR MaLR 0 396 1 407 264 14 29 chr12 98988381 98988521 -45293968 - MIR SINE MIR -29 233 96 560 233 17 0 chr12 98988732 98988852 -45293637 + MER103 DNA DNA 2 123 -43 216 299 70 19 chr12 98989070 98989227 -45293262 + L2 LINE L2 2597 2761 -553 329 316 100 66 chr12 98989467 98989787 -45292702 + L2 LINE L2 2902 3232 -40 * 582 313 49 56 chr12 98989785 98990107 -45292382 - L2 LINE L2 -3 3310 2990 2098 103 38 3 chr12 98990107 98990398 -45292091 + AluSx SINE Alu 12 312 0 582 313 49 56 chr12 98990398 98990542 -45291947 - L2 LINE L2 -323 2990 2847 365 254 162 6 chr12 98990539 98990712 -45291777 + MIR SINE MIR 63 262 0 * 271 310 88 9 chr12 98991024 98991137 -45291352 + L2 LINE L2 3143 3264 -8 342 276 16 16 chr12 98991485 98991612 -45290877 + MIR SINE MIR 31 157 -105 2135 111 0 14 chr12 98992063 98992381 -45290108 + AluSc SINE Alu 1 314 0 704 262 22 71 chr12 98992997 98993187 -45289302 + L2 LINE L2 3006 3204 -109 1301 192 166 43 chr12 98993187 98993603 -45288886 + MLT1C LTR MaLR 1 467 0 704 262 22 71 chr12 98993603 98993637 -45288852 + L2 LINE L2 3204 3238 -75 2983 74 103 28 chr12 98993637 98994094 -45288395 - L1PA10 LINE L1 0 6168 5678 704 262 22 71 chr12 98994094 98994192 -45288297 + L2 LINE L2 3238 3313 0 234 289 0 13 chr12 98994538 98994614 -45287875 + CT-rich Low_complexity Low_complexity 4 78 0 28 0 0 0 chr12 98994699 98994727 -45287762 + GC_rich Low_complexity Low_complexity 1 28 0 605 295 31 22 chr12 98995235 98995459 -45287030 - MIR SINE MIR -8 254 29 186 43 0 0 chr12 98997475 98997498 -45284991 + (A)n Simple_repeat Simple_repeat 1 23 0 192 77 0 0 chr12 98997809 98997835 -45284654 + (T)n Simple_repeat Simple_repeat 1 26 0 774 50 0 0 chr12 98998636 98998735 -45283754 + (CATAG)n Simple_repeat Simple_repeat 1 99 0 478 220 0 8 chr12 98999777 98999895 -45282594 - L1MA10 LINE L1 0 6334 6218 1089 265 49 20 chr12 98999943 99000290 -45282199 + LTR33 LTR ERVL 1 357 -164 504 213 153 70 chr12 99000509 99000810 -45281679 - L2 LINE L2 -6 3307 2982 190 246 70 0 chr12 99001257 99001314 -45281175 - L3b LINE CR1 -229 1354 1294 28 29 0 0 chr12 99001368 99001403 -45281086 + AT_rich Low_complexity Low_complexity 1 35 0 182 217 14 0 chr12 99001598 99001667 -45280822 + (TA)n Simple_repeat Simple_repeat 2 71 0 572 196 101 6 chr12 99001688 99001846 -45280643 - L1MC4a LINE L1 -1971 5837 5665 435 193 0 0 chr12 99001846 99001934 -45280555 + (TG)n Simple_repeat Simple_repeat 2 89 0 236 109 0 0 chr12 99001934 99001980 -45280509 + LTR66 LTR ERVL 394 439 -171 441 95 0 0 chr12 99001993 99002004 -45280485 + (TA)n Simple_repeat Simple_repeat 2 12 -52 227 109 0 0 chr12 99002004 99002050 -45280439 + LTR66 LTR ERVL 394 439 -171 441 95 0 0 chr12 99002050 99002056 -45280433 + (TA)n Simple_repeat Simple_repeat 11 64 0 350 225 14 0 chr12 99002058 99002129 -45280360 - L1MC4a LINE L1 -2178 5630 5559 456 215 13 27 chr12 99002273 99002422 -45280067 + GA-rich Low_complexity Low_complexity 2 148 0 833 256 68 56 chr12 99002643 99003147 -45279342 - L1MC5 LINE L1 -183 7778 7269 838 194 99 5 chr12 99003425 99003616 -45278873 + MER3 DNA MER1_type 1 209 0 2323 89 0 0 chr12 99004250 99004553 -45277936 + AluSx SINE Alu 1 303 -9 622 274 94 15 chr12 99004588 99004789 -45277700 - MIR SINE MIR 0 262 46 492 318 174 24 chr12 99004881 99005390 -45277099 + L2 LINE L2 2717 3308 -5 1995 106 35 0 chr12 99005909 99006192 -45276297 + AluSc SINE Alu 1 293 -16 21 36 0 0 chr12 99006861 99006889 -45275600 + AT_rich Low_complexity Low_complexity 1 28 0 1040 164 0 0 chr12 99007064 99007235 -45275254 + FRAM SINE Alu 2 172 -4 870 146 14 7 chr12 99007235 99007379 -45275110 + AluSq/x SINE Alu 1 145 -168 28 0 0 0 chr12 99007485 99007513 -45274976 + GC_rich Low_complexity Low_complexity 1 28 0 223 211 0 53 chr12 99010580 99010637 -45271852 - L2 LINE L2 -8 3264 3211 382 258 120 33 chr12 99011294 99011481 -45271008 - MIR SINE MIR -51 211 17 655 318 68 13 chr12 99012335 99012571 -45269918 - MIR SINE MIR 0 262 14 278 354 100 0 chr12 99012655 99012785 -45269704 - MIR SINE MIR -22 240 98 386 281 0 0 chr12 99013080 99013162 -45269327 + L2 LINE L2 3232 3313 0 1041 171 5 31 chr12 99013490 99013683 -45268806 + MER5A DNA MER1_type 1 188 -1 622 301 75 9 chr12 99014221 99014434 -45268055 + MIR SINE MIR 15 241 -21 1152 136 0 0 chr12 99014713 99014882 -45267607 - AluSg/x SINE Alu -12 298 130 1594 166 45 24 chr12 99014936 99015225 -45267264 - AluJo SINE Alu -5 307 13 1849 185 27 9 chr12 99015966 99016301 -45266188 - MER58B DNA MER1_type 0 341 1 326 284 136 6 chr12 99016387 99016549 -45265940 - L2 LINE L2 -180 3092 2910 1085 173 5 32 chr12 99016748 99016968 -45265521 + AluJo SINE Alu 1 214 -98 261 186 0 0 chr12 99016972 99017015 -45265474 + FAM SINE Alu 125 167 -12 254 294 59 12 chr12 99017308 99017393 -45265096 - L2 LINE L2 -2 3270 3182 582 273 28 0 chr12 99017432 99017575 -45264914 - MIR SINE MIR -1 261 115 608 294 149 39 chr12 99017620 99018336 -45264153 - L2 LINE L2 -218 3054 2262 209 364 33 33 chr12 99018387 99018508 -45263981 + L2 LINE L2 3143 3263 -9 259 333 0 0 chr12 99019971 99020079 -45262410 + L1MC/D LINE L1 5768 5875 -1933 2045 93 10 30 chr12 99020128 99020428 -45262061 - AluSx SINE Alu -18 294 1 1841 125 43 0 chr12 99020436 99020715 -45261774 - AluSx SINE Alu -21 291 1 297 212 71 12 chr12 99020848 99020933 -45261556 - MER103 DNA DNA -35 131 42 253 237 412 0 chr12 99020989 99021103 -45261386 - MIR SINE MIR -3 259 99 205 232 18 54 chr12 99021920 99021976 -45260513 - MER5A DNA MER1_type -11 178 125 604 169 102 25 chr12 99021976 99022094 -45260395 + FLAM_C SINE Alu 1 127 -6 305 353 29 7 chr12 99022107 99022243 -45260246 - MER5A DNA MER1_type -50 139 1 200 167 0 0 chr12 99023175 99023205 -45259284 + polypurine Low_complexity Low_complexity 1 30 0 252 196 0 0 chr12 99023748 99023794 -45258695 + Charlie5 DNA MER1_type 164 209 -2403 243 250 0 0 chr12 99023751 99023807 -45258682 - MER3 DNA MER1_type -119 90 35 * 4299 258 124 39 chr12 99023807 99024318 -45258171 - L2 LINE L2 -1049 2265 1799 2212 100 0 3 chr12 99024318 99024627 -45257862 - AluSx SINE Alu -4 308 1 4299 258 124 39 chr12 99024627 99025400 -45257089 - L2 LINE L2 -1515 1799 1094 1707 186 0 3 chr12 99025400 99025696 -45256793 + AluJb SINE Alu 1 295 -17 4299 258 124 39 chr12 99025696 99026247 -45256242 - L2 LINE L2 -2220 1094 272 1727 167 7 3 chr12 99026249 99026543 -45255946 - AluJb SINE Alu -17 295 1 895 297 88 19 chr12 99026548 99027013 -45255476 + L2 LINE L2 2640 3142 -171 1991 104 50 0 chr12 99027504 99027783 -45254706 + AluSx SINE Alu 1 293 -19 283 404 7 20 chr12 99028151 99028302 -45254187 - L2 LINE L2 -2 3270 3122 332 298 167 0 chr12 99028322 99028436 -45254053 - L2 LINE L2 -3 3310 3178 370 148 28 93 chr12 99028437 99028545 -45253944 - MLT1I LTR MaLR 0 409 309 373 226 9 38 chr12 99028726 99028832 -45253657 - MLT1H LTR MaLR -387 162 60 382 251 129 41 chr12 99028969 99029140 -45253349 - L2 LINE L2 -181 3091 2906 506 355 57 0 chr12 99029166 99029445 -45253044 - L2 LINE L2 -527 2787 2493 2978 99 24 12 chr12 99029925 99030348 -45252141 - MSTA LTR MaLR 0 428 1 1803 119 0 0 chr12 99030507 99030758 -45251731 + AluJb SINE Alu 34 284 -28 333 220 44 22 chr12 99030763 99030854 -45251635 + MIR SINE MIR 146 238 -24 297 266 92 35 chr12 99030882 99031055 -45251434 - L2 LINE L2 -181 3091 2909 254 283 65 65 chr12 99031143 99031235 -45251254 - L2 LINE L2 -557 2757 2666 2428 144 34 14 chr12 99032194 99032611 -45249878 + MSTB LTR MaLR 2 426 0 235 356 58 29 chr12 99032757 99032861 -45249628 - MIR SINE MIR -24 238 132 1370 162 42 23 chr12 99032877 99033222 -45249267 - MLT1D LTR MaLR 0 505 78 2217 138 9 91 chr12 99033222 99033651 -45248838 + MSTD LTR MaLR 3 396 0 1370 162 42 23 chr12 99033651 99033697 -45248792 - MLT1D LTR MaLR -427 78 34 1231 183 75 4 chr12 99033798 99034066 -45248423 - Charlie4a DNA MER1_type -203 305 19 198 269 90 26 chr12 99034200 99034278 -45248211 + L2 LINE L2 3190 3272 0 189 107 0 0 chr12 99034278 99034306 -45248183 + (TGGG)n Simple_repeat Simple_repeat 4 31 0 205 386 10 10 chr12 99034311 99034412 -45248077 - MIR SINE MIR -142 120 20 484 355 201 7 chr12 99034454 99034862 -45247627 + L3 LINE CR1 976 1462 -115 1031 289 98 42 chr12 99034877 99035676 -45246813 - L2 LINE L2 0 3313 2456 475 240 80 46 chr12 99035770 99035945 -45246544 + MER20B DNA MER1_type 1 181 -602 2029 110 20 3 chr12 99036013 99036313 -45246176 + AluSg SINE Alu 1 305 -5 418 298 44 44 chr12 99036873 99037054 -45245435 - MIR SINE MIR -47 215 35 329 207 98 0 chr12 99037421 99037503 -45244986 - MER91C DNA MER1_type -23 117 28 546 43 0 0 chr12 99037593 99037662 -45244827 + (CA)n Simple_repeat Simple_repeat 1 69 0 791 280 127 60 chr12 99038564 99039085 -45243404 - MLT1L LTR MaLR -16 599 44 673 239 77 70 chr12 99039130 99039389 -45243100 - MIR SINE MIR 0 262 2 423 56 0 0 chr12 99039456 99039510 -45242979 + (TTA)n Simple_repeat Simple_repeat 3 56 0 1441 154 12 4 chr12 99039704 99039950 -45242539 - AluJo SINE Alu -18 294 47 23 0 0 0 chr12 99042039 99042062 -45240427 + AT_rich Low_complexity Low_complexity 1 23 0 200 266 105 40 chr12 99042980 99043104 -45239385 - L3 LINE CR1 -556 1021 890 428 290 22 29 chr12 99043105 99043243 -45239246 + MIR3 SINE MIR 67 203 -5 200 310 220 0 chr12 99043566 99043666 -45238823 + L2 LINE L2 3169 3290 -23 685 276 118 9 chr12 99044307 99044535 -45237954 - MIR SINE MIR -8 254 2 313 313 31 8 chr12 99045403 99045531 -45236958 - L1ME4a LINE L1 -2 6119 5989 237 254 90 0 chr12 99045877 99045944 -45236545 - MIR3 SINE MIR -5 203 131 543 284 86 6 chr12 99046394 99046556 -45235933 - MIR SINE MIR 0 262 88 1863 148 23 0 chr12 99047105 99047408 -45235081 - AluJb SINE Alu -1 311 2 225 313 0 0 chr12 99048019 99048131 -45234358 + (TG)n Simple_repeat Simple_repeat 1 112 0 445 279 0 0 chr12 99048651 99048755 -45233734 - L2 LINE L2 -5 3308 3205 1381 252 87 85 chr12 99048880 99049254 -45233235 - MER21B LTR ERV1 -169 694 317 2259 95 0 0 chr12 99049254 99049550 -45232939 - AluY SINE Alu -15 296 1 1381 252 87 85 chr12 99049550 99049845 -45232644 - MER21B LTR ERV1 -546 317 24 17001 65 11 0 chr12 99050116 99053093 -45229396 + L1PA6 LINE L1 3146 6150 -4 1243 275 119 33 chr12 99053140 99053521 -45228968 - L2 LINE L2 -133 3180 2833 2297 92 0 0 chr12 99053521 99053826 -45228663 - AluSx SINE Alu -7 305 1 1243 275 119 33 chr12 99053826 99054149 -45228340 - L2 LINE L2 -480 2833 2436 337 259 56 84 chr12 99054238 99054381 -45228108 + MIR SINE MIR 46 184 -78 184 229 49 33 chr12 99054429 99054490 -45227999 - MIR SINE MIR -131 77 16 1753 112 26 77 chr12 99054703 99055015 -45227474 - AluJb SINE Alu -16 296 1 289 283 177 22 chr12 99055308 99055470 -45227019 + MIR SINE MIR 23 202 -60 290 264 23 35 chr12 99055554 99055641 -45226848 + MER5A DNA MER1_type 8 93 -96 345 24 0 0 chr12 99056595 99056637 -45225852 + (GA)n Simple_repeat Simple_repeat 1 42 0 366 284 137 14 chr12 99058187 99058376 -45224113 - MIR SINE MIR -40 222 14 471 275 39 56 chr12 99058456 99058634 -45223855 - MER5B DNA MER1_type -3 175 1 2275 174 90 6 chr12 99058790 99059256 -45223233 + MLT1D LTR MaLR 1 505 0 351 269 172 14 chr12 99059264 99059409 -45223080 + MIR SINE MIR 95 262 0 806 228 65 5 chr12 99060358 99060542 -45221947 + MIR SINE MIR 66 260 -2 1723 159 3 13 chr12 99060635 99060936 -45221553 - AluJo SINE Alu -13 299 2 1010 312 107 58 chr12 99061041 99062092 -45220397 - L2 LINE L2 -4 3268 2170 3154 216 22 9 chr12 99062292 99062936 -45219553 - MER82 DNA MER2_type -1 652 1 23 0 0 0 chr12 99064059 99064082 -45218407 + AT_rich Low_complexity Low_complexity 1 23 0 1122 83 52 87 chr12 99064089 99064318 -45218171 - L1MC2 LINE L1 -9 6335 6115 321 275 99 30 chr12 99064519 99064650 -45217839 - MIR SINE MIR -76 186 47 268 366 40 0 chr12 99064906 99065007 -45217482 + L2 LINE L2 3136 3240 -32 528 318 47 40 chr12 99065664 99065842 -45216647 + Charlie8 DNA MER1_type 1 183 -158 1824 142 70 25 chr12 99065842 99066201 -45216288 + THE1C LTR MaLR 1 375 0 528 318 47 40 chr12 99066201 99066296 -45216193 + Charlie8 DNA MER1_type 183 276 -65 2058 153 90 20 chr12 99066321 99066721 -45215768 + MSTA LTR MaLR 1 428 0 270 273 13 13 chr12 99066752 99066829 -45215660 + Charlie8 DNA MER1_type 2341 2417 0 324 228 54 11 chr12 99067017 99067109 -45215380 - MIR3 SINE MIR -21 187 92 1356 226 14 50 chr12 99067326 99067640 -45214849 - MLT1C LTR MaLR -2 465 164 2153 114 0 0 chr12 99067640 99067937 -45214552 + AluSq SINE Alu 1 297 -16 1356 226 14 50 chr12 99067937 99067984 -45214505 - MLT1C LTR MaLR -303 164 117 2356 162 72 43 chr12 99067992 99068282 -45214207 + MLT2B1 LTR ERVL 1 281 -239 2152 128 138 5 chr12 99068282 99068658 -45213831 - MSTA LTR MaLR -2 426 1 2356 162 72 43 chr12 99068658 99068824 -45213665 + MLT2B1 LTR ERVL 281 474 -46 2065 131 52 9 chr12 99068824 99069153 -45213336 - MER2 DNA MER2_type 0 344 2 2356 162 72 43 chr12 99069153 99069183 -45213306 + MLT2B1 LTR ERVL 474 502 -18 2929 182 168 27 chr12 99069198 99069319 -45213170 - Charlie1a DNA MER1_type -1695 1066 964 2274 97 3 0 chr12 99069319 99069627 -45212862 + AluSp SINE Alu 1 309 -4 2929 182 168 27 chr12 99069627 99070126 -45212363 - Charlie1a DNA MER1_type -1797 964 537 2303 97 0 3 chr12 99070126 99070436 -45212053 + AluSc SINE Alu 1 309 0 2929 182 168 27 chr12 99070436 99070675 -45211814 - Charlie1a DNA MER1_type -2224 537 84 324 259 74 0 chr12 99070722 99070803 -45211686 - Charlie1a DNA MER1_type -1367 88 2 3728 25 0 18 chr12 99070912 99071356 -45211133 + L1PA4 LINE L1 5720 6155 0 469 309 11 0 chr12 99071963 99072141 -45210348 + MER104 DNA MER2_type 1 180 0 2092 143 11 17 chr12 99072192 99072542 -45209947 - MER7A DNA MER2_type 0 346 1 379 261 0 0 chr12 99072728 99072820 -45209669 - MER69A DNA AcHobo -63 114 23 804 306 60 24 chr12 99072823 99073192 -45209297 + MLT1J LTR MaLR 130 511 0 218 317 8 83 chr12 99073267 99073387 -45209102 + MIR SINE MIR 31 141 -67 1457 212 77 40 chr12 99073736 99074165 -45208324 - LTR16A1 LTR ERVL -12 445 1 2046 120 0 0 chr12 99075391 99075683 -45206806 - AluSx SINE Alu -16 296 5 313 322 126 40 chr12 99076364 99076927 -45205562 + L2 LINE L2 2575 3253 -19 629 274 80 20 chr12 99077174 99077375 -45205114 + MIR SINE MIR 49 261 -1 2351 145 8 16 chr12 99077473 99077644 -45204845 - Tigger2 DNA MER2_type -1 2717 2546 1754 144 24 110 chr12 99077644 99078054 -45204435 - THE1C LTR MaLR 0 375 1 2351 145 8 16 chr12 99078054 99078269 -45204220 - Tigger2 DNA MER2_type -172 2546 2334 249 36 0 0 chr12 99078300 99078328 -45204161 + Tigger2 DNA MER2_type 1 28 -2690 233 97 0 0 chr12 99078349 99078380 -45204109 - Tigger2 DNA MER2_type -2686 32 2 744 206 16 74 chr12 99078711 99078900 -45203589 + MER45A DNA AcHobo 1 178 0 264 143 61 0 chr12 99078942 99078991 -45203498 + L2 LINE L2 3221 3272 0 2395 193 39 57 chr12 99079039 99079603 -45202886 - MLT2B3 LTR ERVL 0 554 1 257 89 0 0 chr12 99080000 99080045 -45202444 - L1MB4 LINE L1 -1 6179 6135 * 3052 156 33 57 chr12 99080044 99080672 -45201817 + L1MB3 LINE L1 5333 5945 -238 1559 194 43 26 chr12 99080665 99081010 -45201479 - L1MB3 LINE L1 -99 6084 5734 * 225 0 0 0 chr12 99081191 99081216 -45201273 + (A)n Simple_repeat Simple_repeat 1 25 0 2228 103 0 3 chr12 99081270 99081582 -45200907 + AluSx SINE Alu 2 312 0 582 281 122 70 chr12 99082031 99082229 -45200260 - L2 LINE L2 0 3313 3127 1661 181 7 0 chr12 99082229 99082521 -45199968 + AluJo SINE Alu 1 294 -18 582 281 122 70 chr12 99082521 99082949 -45199540 - L2 LINE L2 -186 3127 2664 243 91 182 106 chr12 99083043 99083109 -45199380 + MLT1J LTR MaLR 393 463 -48 281 288 182 45 chr12 99083743 99083875 -45198614 + L2 LINE L2 3123 3272 0 2030 99 3 0 chr12 99083937 99084249 -45198240 - AluSx SINE Alu 0 313 1 238 302 208 31 chr12 99085758 99085950 -45196539 - L2 LINE L2 -41 3231 3006 3041 195 29 23 chr12 99085952 99086567 -45195922 + MLT1E3 LTR MaLR 6 624 0 534 251 53 18 chr12 99086734 99086905 -45195584 + MIR SINE MIR 84 260 -2 447 335 6 37 chr12 99086963 99087127 -45195362 + MER5A DNA MER1_type 3 161 -28 2073 110 3 0 chr12 99087565 99087855 -45194634 + AluSx SINE Alu 1 291 -21 341 266 114 51 chr12 99088539 99088596 -45193893 + MIR SINE MIR 83 135 -127 2832 111 34 0 chr12 99088596 99089010 -45193479 - MSTC LTR MaLR 0 428 1 341 266 114 51 chr12 99089010 99089110 -45193379 + MIR SINE MIR 135 250 -12 606 255 166 36 chr12 99089142 99089639 -45192850 + L2 LINE L2 2707 3294 -19 655 268 142 4 chr12 99089654 99089915 -45192574 + L2 LINE L2 3011 3307 -6 562 193 298 6 chr12 99090325 99090486 -45192003 + MIR SINE MIR 21 228 -34 2304 182 45 9 chr12 99090488 99090932 -45191557 - LTR40b LTR ERVL 0 462 3 219 36 0 0 chr12 99091702 99091730 -45190759 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 415 246 115 8 chr12 99091745 99091867 -45190622 + MIR SINE MIR 49 183 -79 765 231 132 5 chr12 99092885 99093097 -45189392 + MIR SINE MIR 23 261 -1 1848 138 78 22 chr12 99093477 99093796 -45188693 + MER1B DNA MER1_type 1 337 0 270 0 0 0 chr12 99095132 99095162 -45187327 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 262 273 125 45 chr12 99095297 99095473 -45187016 - L2 LINE L2 -258 3055 2866 4827 152 43 17 chr12 99095648 99096453 -45186036 + LTR1B LTR ERV1 1 826 0 969 113 0 0 chr12 99096511 99096644 -45185845 + AluY SINE Alu 149 281 -30 180 0 0 0 chr12 99096650 99096670 -45185819 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 591 261 119 10 chr12 99096713 99097008 -45185481 + L1ME4a LINE L1 5725 6051 -70 23 68 0 0 chr12 99097156 99097200 -45185289 + AT_rich Low_complexity Low_complexity 1 44 0 1685 188 10 3 chr12 99097208 99097517 -45184972 + AluJo SINE Alu 1 311 -1 444 226 28 0 chr12 99098822 99098928 -45183561 + Charlie8 DNA MER1_type 92 200 -2217 898 296 23 19 chr12 99099363 99099623 -45182866 + MIR SINE MIR 1 261 -1 246 293 94 19 chr12 99099703 99099809 -45182680 - L2 LINE L2 0 3313 3200 2264 112 0 0 chr12 99100021 99100333 -45182156 + AluSx SINE Alu 1 312 0 324 0 0 0 chr12 99100448 99100484 -45182005 + (CA)n Simple_repeat Simple_repeat 2 37 0 1708 163 0 25 chr12 99101018 99101338 -45181151 + AluJb SINE Alu 1 312 0 720 224 7 0 chr12 99102088 99102235 -45180254 + MER3 DNA MER1_type 62 209 0 291 211 0 0 chr12 99102192 99102244 -45180245 - MER3 DNA MER1_type -119 90 39 * 292 131 16 16 chr12 99102318 99102379 -45180110 + CT-rich Low_complexity Low_complexity 4 64 0 813 231 0 0 chr12 99102379 99102526 -45179963 - FRAM SINE Alu -37 139 1 41 0 0 0 chr12 99102539 99102580 -45179909 + AT_rich Low_complexity Low_complexity 1 41 0 1316 49 0 0 chr12 99102583 99102745 -45179744 - L1MA1 LINE L1 0 6302 6141 1805 162 17 3 chr12 99102750 99103047 -45179442 - AluJb SINE Alu -11 301 1 311 245 157 29 chr12 99103367 99103469 -45179020 - MIR SINE MIR -60 148 34 23 0 0 0 chr12 99103944 99103967 -45178522 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 99103979 99104001 -45178488 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr12 99104041 99104064 -45178425 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 21 36 0 0 chr12 99104142 99104170 -45178319 + AT_rich Low_complexity Low_complexity 1 28 0 900 150 84 0 chr12 99104170 99104326 -45178163 - AluJb SINE Alu -26 286 120 237 288 55 14 chr12 99104498 99104571 -45177918 - MER5B DNA MER1_type -99 79 4 220 207 82 0 chr12 99104633 99104704 -45177785 + MIR3 SINE MIR 108 154 -54 339 161 54 54 chr12 99105578 99105671 -45176818 + MER91B DNA MER1_type 37 129 -61 318 221 0 74 chr12 99105689 99105784 -45176705 + MER91B DNA MER1_type 91 178 -12 2453 86 0 9 chr12 99106205 99106520 -45175969 - AluSx SINE Alu 0 312 1 507 309 126 3 chr12 99107270 99107603 -45174886 - L2 LINE L2 -19 3294 2921 494 264 0 0 chr12 99107731 99107852 -45174637 - MIR SINE MIR -21 241 121 24 0 0 0 chr12 99108387 99108411 -45174078 + AT_rich Low_complexity Low_complexity 1 24 0 1729 184 66 21 chr12 99109442 99109866 -45172623 + Charlie4a DNA MER1_type 41 483 -25 184 304 145 0 chr12 99110680 99110749 -45171740 - L2 LINE L2 -3 3269 3191 395 214 27 27 chr12 99111142 99111254 -45171235 + MLT1L LTR MaLR 151 262 -353 16404 50 2 6 chr12 99112654 99115511 -45166978 - L1PA5 LINE L1 0 6154 3329 287 318 110 50 chr12 99115557 99115856 -45166633 - L2 LINE L2 -796 2518 2202 651 96 0 22 chr12 99115990 99116125 -45166364 + (TC)n Simple_repeat Simple_repeat 1 132 0 278 342 103 16 chr12 99116177 99116361 -45166128 - MLT1K LTR MaLR -271 317 118 22 0 0 0 chr12 99117559 99117581 -45164908 + AT_rich Low_complexity Low_complexity 1 22 0 283 295 13 0 chr12 99117972 99118050 -45164439 + L2 LINE L2 3229 3307 -6 457 359 6 0 chr12 99118497 99118653 -45163836 - L2 LINE L2 -219 3053 2897 184 356 0 0 chr12 99118696 99118755 -45163734 + L2 LINE L2 3244 3302 -11 2267 95 0 30 chr12 99119040 99119344 -45163145 - AluSx SINE Alu -17 295 1 2410 95 7 0 chr12 99120166 99120471 -45162018 - AluSx SINE Alu -3 309 3 359 280 117 3 chr12 99120929 99121138 -45161351 + MIR SINE MIR 21 257 -5 2298 122 70 19 chr12 99121180 99121550 -45160939 + MLT1B LTR MaLR 1 389 -1 599 264 109 5 chr12 99121619 99121812 -45160677 - MIR SINE MIR -13 249 37 657 274 39 0 chr12 99121813 99121966 -45160523 - MER91A DNA MER1_type -2 194 36 9308 149 31 31 chr12 99125425 99127127 -45155362 - L1M1 LINE L1 -4443 3122 1420 4545 116 4 6 chr12 99127153 99127837 -45154652 - L1MA3 LINE L1 -1 6304 5622 6487 162 38 2 chr12 99127837 99128880 -45153609 - L1M1 LINE L1 -6469 1096 16 4966 131 53 15 chr12 99128884 99129737 -45152752 - L1MB3 LINE L1 -40 6143 5259 335 263 120 8 chr12 99129759 99129892 -45152597 + L2 LINE L2 3164 3311 -2 758 158 42 0 chr12 99129957 99130077 -45152412 + FLAM_C SINE Alu 2 126 -7 2894 103 36 7 chr12 99130086 99130502 -45151987 - MSTA LTR MaLR 0 428 1 922 152 0 55 chr12 99130505 99130669 -45151820 + AluJb SINE Alu 141 295 -17 765 275 106 13 chr12 99130822 99131124 -45151365 + L1ME3A LINE L1 5616 5945 -225 24 0 0 0 chr12 99131958 99131982 -45150507 + AT_rich Low_complexity Low_complexity 1 24 0 2229 139 56 53 chr12 99132001 99132432 -45150057 - MSTB1 LTR MaLR 0 432 1 204 197 42 183 chr12 99132650 99132736 -45149753 - MIR SINE MIR -85 177 117 2063 132 42 0 chr12 99132736 99133025 -45149464 + AluSx SINE Alu 1 301 -11 204 197 42 183 chr12 99133025 99133080 -45149409 - MIR SINE MIR -145 117 56 377 172 35 134 chr12 99133090 99133321 -45149168 + MER58 DNA MER1_type 5 2396 -24 191 283 130 33 chr12 99134259 99134351 -45148138 - MIR SINE MIR -75 133 33 1169 201 23 0 chr12 99134385 99134604 -45147885 + MER58A DNA MER1_type 1 224 0 261 272 132 7 chr12 99134641 99134777 -45147712 + MIR SINE MIR 101 253 -9 424 283 94 40 chr12 99135064 99135287 -45147202 - MLT1K LTR MaLR -162 426 192 443 287 123 40 chr12 99135359 99135610 -45146879 + MLT1J1 LTR MaLR 63 334 -112 19288 73 8 1 chr12 99135716 99138264 -45144225 - L1P LINE L1 -1943 4203 1639 221 259 176 0 chr12 99138379 99138464 -45144025 - MIR SINE MIR -156 106 7 1790 132 140 71 chr12 99139386 99139751 -45142738 + MLT1B LTR MaLR 1 390 0 484 277 143 45 chr12 99139759 99140014 -45142475 - L2 LINE L2 -129 3184 2955 1774 156 0 39 chr12 99140014 99140322 -45142167 + AluJo SINE Alu 1 296 -16 484 277 143 45 chr12 99140322 99140553 -45141936 - L2 LINE L2 -358 2955 2637 233 167 37 0 chr12 99140584 99140638 -45141851 - L2 LINE L2 -809 2505 2450 5825 51 3 0 chr12 99140681 99141560 -45140929 - L1PA6 LINE L1 -195 5959 5078 1004 229 111 49 chr12 99141560 99141999 -45140490 + MLT1E LTR MaLR 1 536 -57 2332 100 0 7 chr12 99141999 99142298 -45140191 + AluSg SINE Alu 1 297 -13 1004 229 111 49 chr12 99142298 99142360 -45140129 + MLT1E LTR MaLR 536 593 0 245 302 146 19 chr12 99142361 99142566 -45139923 - L2 LINE L2 -250 3063 2833 255 284 0 0 chr12 99142949 99143016 -45139473 - MLT1J1 LTR MaLR -288 158 92 458 305 59 17 chr12 99144050 99144241 -45138248 - MIR SINE MIR -32 230 33 1718 186 8 65 chr12 99144712 99145094 -45137395 + MLT1A1 LTR MaLR 6 365 0 2449 84 0 3 chr12 99145156 99145467 -45137022 + AluY SINE Alu 1 310 -1 368 279 58 19 chr12 99145598 99145752 -45136737 - MIR SINE MIR -14 248 89 185 0 40 0 chr12 99145797 99145822 -45136667 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 212 271 73 21 chr12 99145824 99145920 -45136569 + MIR3 SINE MIR 60 160 -48 805 122 65 0 chr12 99146022 99146145 -45136344 - FLAM_C SINE Alu -2 131 1 395 285 201 0 chr12 99146347 99146526 -45135963 - L2 LINE L2 -251 3062 2848 395 284 9 0 chr12 99146676 99146785 -45135704 + MIR SINE MIR 85 194 -68 375 261 24 104 chr12 99147516 99147590 -45134899 + MLT1L LTR MaLR 199 277 -338 2209 116 0 0 chr12 99147590 99147891 -45134598 - AluSg SINE Alu -9 301 1 375 261 24 104 chr12 99147891 99148027 -45134462 + MLT1L LTR MaLR 277 392 -223 2420 97 45 11 chr12 99148048 99148400 -45134089 + THE1B LTR MaLR 1 364 0 287 311 28 0 chr12 99148426 99148532 -45133957 + MLT1L LTR MaLR 507 615 0 332 219 102 86 chr12 99148649 99148777 -45133712 - MER94 DNA DNA 0 134 5 310 384 33 0 chr12 99149951 99150102 -45132387 - L2 LINE L2 -1 3271 3116 384 22 0 0 chr12 99150125 99150170 -45132319 + (CA)n Simple_repeat Simple_repeat 2 46 0 303 269 141 32 chr12 99150170 99150326 -45132163 + LTR37B LTR ERV1 25 197 -271 * 975 239 20 37 chr12 99150316 99150647 -45131842 + LTR37B LTR ERV1 111 468 0 235 303 128 28 chr12 99150707 99150918 -45131571 - L2 LINE L2 -210 3062 2831 309 307 40 47 chr12 99151540 99151690 -45130799 - MIR SINE MIR -51 211 63 800 260 56 5 chr12 99151867 99152056 -45130433 - MLT1H1 LTR MaLR -2 553 355 1877 210 19 7 chr12 99152056 99152429 -45130060 + MLT2D LTR ERVL 4 480 -40 698 248 79 25 chr12 99152468 99152737 -45129752 - MLT1H LTR MaLR -289 266 15 2230 148 51 65 chr12 99152879 99153313 -45129176 + MSTA LTR MaLR 1 428 0 573 311 17 47 chr12 99153415 99153650 -45128839 + MIR SINE MIR 1 228 -34 26 0 0 0 chr12 99153673 99153699 -45128790 + AT_rich Low_complexity Low_complexity 1 26 0 606 212 113 13 chr12 99154527 99154678 -45127811 + MER91A DNA MER1_type 1 166 -30 756 224 63 0 chr12 99155125 99155299 -45127190 - MIR SINE MIR -6 256 72 3976 152 15 33 chr12 99155324 99155613 -45126876 + L1MB8 LINE L1 5402 5695 -483 2037 151 3 0 chr12 99155613 99155917 -45126572 - AluJb SINE Alu -7 305 1 3976 152 15 33 chr12 99155917 99156364 -45126125 + L1MB8 LINE L1 5695 6125 -53 4163 72 14 0 chr12 99156367 99156884 -45125605 - L1PA10 LINE L1 -3 6165 5642 250 227 64 139 chr12 99157115 99157287 -45125202 + MLT1J2-int LTR MaLR 1020 1178 -193 563 240 0 40 chr12 99157472 99157622 -45124867 + MLT1J2 LTR MaLR 1 144 -306 441 301 45 83 chr12 99157764 99157920 -45124569 + MER91A DNA MER1_type 1 150 -46 221 259 0 35 chr12 99158005 99158063 -45124426 + MER91A DNA MER1_type 140 195 -1 848 266 126 38 chr12 99158826 99159198 -45123291 + MLT1I LTR MaLR 2 406 -3 222 244 167 11 chr12 99159831 99159921 -45122568 - MIR SINE MIR -36 226 123 321 164 98 0 chr12 99159921 99159982 -45122507 + LTR8 LTR ERV1 1 67 -624 209 158 49 110 chr12 99160115 99160197 -45122292 - MER5A DNA MER1_type 0 189 113 412 252 9 27 chr12 99160252 99160363 -45122126 - MER5A DNA MER1_type -67 122 14 360 0 0 0 chr12 99160713 99160753 -45121736 + (CA)n Simple_repeat Simple_repeat 1 40 0 1552 187 30 10 chr12 99161011 99161310 -45121179 - AluJo SINE Alu -7 305 1 2274 100 3 0 chr12 99161942 99162227 -45120262 + AluSx SINE Alu 1 287 -20 180 0 0 0 chr12 99162227 99162247 -45120242 + (CTA)n Simple_repeat Simple_repeat 1 20 0 399 324 91 28 chr12 99163233 99163520 -45118969 - L2 LINE L2 -634 2680 2376 2048 218 130 26 chr12 99163575 99164112 -45118377 - MLT1E LTR MaLR 0 593 1 258 330 62 9 chr12 99164113 99164225 -45118264 + MIR3 SINE MIR 40 157 -51 636 281 28 18 chr12 99164281 99164498 -45117991 + MLT1I LTR MaLR 191 409 0 220 196 0 0 chr12 99165745 99165791 -45116698 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 371 333 33 38 chr12 99165947 99166130 -45116359 - MER5A DNA MER1_type -6 183 2 1957 269 89 71 chr12 99166563 99167620 -45114869 + L1MEd LINE L1 4 1079 -5040 229 359 11 22 chr12 99167676 99167768 -45114721 - L2 LINE L2 -81 3191 3101 249 235 99 25 chr12 99167819 99167900 -45114589 + L2 LINE L2 3225 3311 -2 274 29 0 0 chr12 99167978 99168013 -45114476 - L1MA2 LINE L1 -3 6301 6267 519 307 21 59 chr12 99168312 99168417 -45114072 - MIR SINE MIR 0 262 155 2284 82 0 0 chr12 99168417 99168730 -45113759 - AluY SINE Alu 0 313 1 519 307 21 59 chr12 99168730 99168861 -45113628 - MIR SINE MIR -107 155 34 760 144 8 0 chr12 99169805 99169930 -45112559 - L1MB3 LINE L1 0 6183 6058 2374 98 0 0 chr12 99170272 99170579 -45111910 + AluSg1 SINE Alu 1 307 -2 489 281 0 0 chr12 99171211 99171325 -45111164 + MER94 DNA DNA 1 114 -20 639 264 143 14 chr12 99171867 99172004 -45110485 + MIR SINE MIR 12 130 -132 2878 138 24 2 chr12 99172004 99172425 -45110064 + MSTB1 LTR MaLR 1 430 -2 639 264 143 14 chr12 99172425 99172503 -45109986 + MIR SINE MIR 130 255 -7 1291 215 58 87 chr12 99172731 99172887 -45109602 - MER34B LTR ERV1 -2 563 404 2129 128 136 18 chr12 99172887 99173270 -45109219 - MSTA LTR MaLR 0 428 1 11174 118 3 35 chr12 99173270 99174900 -45107589 - MSTA-int LTR MaLR 0 1580 3 2113 134 142 16 chr12 99174902 99175282 -45107207 - MSTA LTR MaLR 0 428 1 1291 215 58 87 chr12 99175282 99175651 -45106838 - MER34B LTR ERV1 -161 404 1 1121 107 41 25 chr12 99175672 99175868 -45106621 - L1MC2 LINE L1 -10 6334 6136 1661 192 0 3 chr12 99175887 99176195 -45106294 + AluJb SINE Alu 1 307 0 1950 184 46 3 chr12 99176196 99176566 -45105923 - L1MC3 LINE L1 -206 7579 7194 271 229 33 0 chr12 99176566 99176627 -45105862 - MLT1F1 LTR MaLR -436 131 69 2530 53 0 10 chr12 99176717 99177020 -45105469 + AluY SINE Alu 1 300 -11 2091 120 16 3 chr12 99177032 99177340 -45105149 + AluSx SINE Alu 1 312 0 1191 121 0 28 chr12 99177340 99177522 -45104967 + AluSg/x SINE Alu 128 304 -6 852 117 22 22 chr12 99177639 99177818 -45104671 + CT-rich Low_complexity Low_complexity 1 179 0 2074 132 16 3 chr12 99177819 99178200 -45104289 - AluSx SINE Alu 0 385 1 817 183 0 11 chr12 99178218 99178398 -45104091 + CT-rich Low_complexity Low_complexity 2 179 0 206 135 0 27 chr12 99178402 99178439 -45104050 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 894 239 0 0 chr12 99178439 99178602 -45103887 - FRAM SINE Alu -3 163 1 182 315 41 14 chr12 99180888 99180961 -45101528 + MIR SINE MIR 23 97 -165 502 314 142 50 chr12 99181126 99181486 -45101003 + MLT1L LTR MaLR 218 610 -5 395 333 217 8 chr12 99181767 99182145 -45100344 - L2 LINE L2 -694 2620 2164 22 35 0 0 chr12 99182190 99182219 -45100270 + AT_rich Low_complexity Low_complexity 1 29 0 309 299 112 56 chr12 99182341 99182579 -45099910 + L1MC4a LINE L1 3070 3330 -2816 771 152 27 165 chr12 99182579 99182803 -45099686 + 7SK RNA RNA 1 193 0 309 299 112 56 chr12 99182803 99182868 -45099621 + L1MC4a LINE L1 3330 3390 -2756 36866 99 16 14 chr12 99183163 99189284 -45093205 + L1PA7 LINE L1 11 6153 -1 1299 178 10 5 chr12 99189406 99189614 -45092875 - MER21B LTR ERV1 -654 209 1 404 313 78 32 chr12 99189615 99190139 -45092350 + L1MC4a LINE L1 4093 4640 -1506 1299 119 82 0 chr12 99190159 99190353 -45092136 + AluSg/x SINE Alu 85 294 -16 21 57 0 0 chr12 99190618 99190653 -45091836 + AT_rich Low_complexity Low_complexity 1 35 0 797 298 105 27 chr12 99190750 99191394 -45091095 + L1MC4a LINE L1 5174 5360 -786 195 42 0 0 chr12 99191480 99191504 -45090985 + (CA)n Simple_repeat Simple_repeat 1 24 0 6176 152 9 23 chr12 99191629 99193700 -45088789 - L1PA16 LINE L1 -1 6165 4125 1815 161 118 9 chr12 99193737 99194066 -45088423 - MLT1A1 LTR MaLR 0 365 1 395 248 37 128 chr12 99194145 99194520 -45087969 + L1ME4a LINE L1 5712 6052 -69 415 275 128 13 chr12 99194989 99195138 -45087351 + MARNA DNA Mariner 282 447 -139 2008 117 0 4 chr12 99196030 99196304 -45086185 - AluSx SINE Alu -39 273 1 678 230 30 115 chr12 99197006 99197188 -45085301 + MER112 DNA MER1_type 1 154 -106 2158 123 0 16 chr12 99197188 99197504 -45084985 - AluSx SINE Alu -1 311 1 678 230 30 115 chr12 99197504 99197591 -45084898 + MER112 DNA MER1_type 154 247 -13 941 234 5 29 chr12 99197987 99198196 -45084293 - MIR SINE MIR 0 262 59 400 318 48 0 chr12 99198196 99198322 -45084167 + MIR SINE MIR 3 134 -128 859 181 0 0 chr12 99198408 99198535 -45083954 + FLAM_C SINE Alu 1 127 -6 297 153 69 14 chr12 99198561 99198633 -45083856 - HsTC2 DNA Tc2 -1820 78 3 2135 127 0 0 chr12 99198774 99199093 -45083396 + AluSx SINE Alu 1 319 0 862 181 0 0 chr12 99199705 99199838 -45082651 - FLAM_A SINE Alu 0 133 1 2044 153 0 0 chr12 99200213 99200514 -45081975 - AluJb SINE Alu -11 301 1 433 274 89 25 chr12 99201093 99201250 -45081239 - MIR SINE MIR -17 245 79 215 306 93 19 chr12 99201665 99201773 -45080716 + MIR SINE MIR 36 151 -111 378 0 0 0 chr12 99203066 99203108 -45079381 + (TG)n Simple_repeat Simple_repeat 1 42 0 191 414 17 0 chr12 99203915 99204031 -45078458 + MIR SINE MIR 124 241 -21 439 194 83 9 chr12 99204667 99204775 -45077714 + MIR SINE MIR 73 188 -74 1710 194 0 6 chr12 99204789 99205103 -45077386 - AluJo SINE Alu 0 312 1 375 240 10 48 chr12 99206144 99206248 -45076241 - MIR SINE MIR -132 130 31 189 0 0 0 chr12 99206326 99206347 -45076142 + (T)n Simple_repeat Simple_repeat 1 21 0 540 308 89 25 chr12 99206431 99206746 -45075743 - MLT1K LTR MaLR -2 586 252 1394 86 6 0 chr12 99206748 99206923 -45075566 + AluSc SINE Alu 123 298 -11 1504 113 0 10 chr12 99207353 99207557 -45074932 - AluY SINE Alu -109 202 1 663 291 63 56 chr12 99207567 99207852 -45074637 - MER21B LTR ERV1 -553 310 24 366 23 0 0 chr12 99208207 99208250 -45074239 + (CA)n Simple_repeat Simple_repeat 1 43 0 432 239 22 22 chr12 99208286 99208420 -45074069 - MIR SINE MIR -8 254 121 640 282 107 38 chr12 99209233 99209580 -45072909 - L2 LINE L2 -22 3291 2921 2034 90 0 4 chr12 99209594 99209849 -45072640 + AluSg SINE Alu 1 254 -56 273 376 30 0 chr12 99209965 99210098 -45072391 - L2 LINE L2 -9 3304 3168 264 317 50 35 chr12 99210146 99210334 -45072155 - MIR SINE MIR -19 189 11 277 293 25 61 chr12 99212454 99212606 -45069883 + MIR SINE MIR 50 195 -67 1756 126 4 15 chr12 99212606 99212868 -45069621 + AluJo SINE Alu 39 297 -15 277 293 25 61 chr12 99212868 99212913 -45069576 + MIR SINE MIR 195 240 -22 351 299 16 8 chr12 99213253 99213380 -45069109 + MIR SINE MIR 127 254 -8 395 266 40 40 chr12 99213472 99213645 -45068844 + Charlie8 DNA MER1_type 92 264 -2153 474 280 80 15 chr12 99214463 99214663 -45067826 + L2 LINE L2 3094 3306 -7 193 348 80 18 chr12 99214775 99214887 -45067602 - L2 LINE L2 -189 3083 2965 250 269 86 0 chr12 99215032 99215125 -45067364 - MER5A DNA MER1_type -85 104 4 888 168 74 20 chr12 99216779 99216981 -45065508 - MIR SINE MIR -14 248 36 361 227 250 0 chr12 99217019 99217147 -45065342 + MIR SINE MIR 4 163 -99 2233 100 7 3 chr12 99217157 99217456 -45065033 + AluSx SINE Alu 1 300 -12 215 281 78 10 chr12 99217459 99217561 -45064928 + MIR SINE MIR 45 152 -74 901 181 11 32 chr12 99217571 99217759 -45064730 + AluJb SINE Alu 129 312 0 395 170 85 11 chr12 99218374 99218468 -45064021 + L2 LINE L2 3182 3282 -31 216 0 0 0 chr12 99218491 99218515 -45063974 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 598 247 67 6 chr12 99219037 99219215 -45063274 - MER5A DNA MER1_type 0 189 1 431 278 90 0 chr12 99219215 99219348 -45063141 - MIR SINE MIR -80 182 38 358 281 74 0 chr12 99219467 99219602 -45062887 - MIR SINE MIR -23 239 95 194 273 45 0 chr12 99220069 99220135 -45062354 + MIR SINE MIR 109 177 -85 743 248 77 44 chr12 99220405 99220703 -45061786 - LTR16C LTR ERVL -52 439 132 190 244 0 0 chr12 99220830 99220871 -45061618 + MIR SINE MIR 203 243 -19 333 285 30 18 chr12 99220938 99221103 -45061386 + L2 LINE L2 2914 3080 -192 2495 79 0 22 chr12 99221158 99221476 -45061013 - AluSx SINE Alu -1 311 1 235 349 12 0 chr12 99221532 99221615 -45060874 + L2 LINE L2 3114 3197 -75 1811 163 4 4 chr12 99221813 99222089 -45060400 - AluJb SINE Alu -36 276 1 542 214 17 3 chr12 99222140 99222269 -45060220 + MLT1J2 LTR MaLR 31 158 -288 766 226 65 0 chr12 99222314 99222482 -45060007 - MER58A DNA MER1_type 0 224 46 626 241 128 87 chr12 99222781 99223047 -45059442 + MLT1K LTR MaLR 306 582 -6 790 287 72 37 chr12 99223066 99223576 -45058913 + MLT1H LTR MaLR 21 545 -4 302 283 40 0 chr12 99223588 99223687 -45058802 + MIR SINE MIR 160 262 0 920 9 9 0 chr12 99223740 99223849 -45058640 + (TTC)n Simple_repeat Simple_repeat 2 111 0 236 368 37 7 chr12 99223865 99224001 -45058488 + L2 LINE L2 3133 3272 0 222 156 44 0 chr12 99224001 99224046 -45058443 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 2154 99 3 0 chr12 99224925 99225237 -45057252 + AluSx SINE Alu 1 313 0 240 263 184 44 chr12 99225299 99225413 -45057076 - L2 LINE L2 0 3272 3143 245 91 182 106 chr12 99226065 99226131 -45056358 - MLT1J LTR MaLR -48 463 393 428 306 57 82 chr12 99226363 99226652 -45055837 + L2 LINE L2 2842 3118 -195 1775 175 7 7 chr12 99226652 99226944 -45055545 - AluJo SINE Alu -20 292 1 428 306 57 82 chr12 99226944 99227095 -45055394 + L2 LINE L2 3118 3271 -42 2389 86 0 16 chr12 99227591 99227906 -45054583 - AluSg SINE Alu 0 310 1 976 254 29 0 chr12 99227923 99228230 -45054259 - L2 LINE L2 -563 2751 2436 286 285 65 24 chr12 99228339 99228462 -45054027 + MIR SINE MIR 57 184 -78 1870 112 26 77 chr12 99228784 99229096 -45053393 - AluJb SINE Alu -16 296 1 238 309 56 40 chr12 99229425 99229551 -45052938 + MIR SINE MIR 75 202 -60 259 264 23 35 chr12 99229635 99229722 -45052767 + MER5A DNA MER1_type 8 93 -96 1523 98 19 49 chr12 99230246 99230512 -45051977 + LTR23 LTR ERV1 175 432 -5 843 172 12 71 chr12 99230724 99230893 -45051596 + FRAM SINE Alu 5 163 -3 4045 126 59 38 chr12 99230926 99231638 -45050851 + LTR8A LTR ERV1 1 727 0 344 297 51 8 chr12 99232864 99232982 -45049507 - MIR SINE MIR -80 182 60 1517 158 77 41 chr12 99234485 99234847 -45047642 - THE1C LTR MaLR 0 375 1 348 227 11 23 chr12 99236383 99236471 -45046018 - L2 LINE L2 -20 3293 3207 202 296 122 17 chr12 99236799 99236914 -45045575 - L2 LINE L2 -498 2816 2690 1786 131 4 0 chr12 99237886 99238131 -45044358 + AluSp SINE Alu 1 246 -67 1014 237 0 24 chr12 99238847 99239058 -45043431 - MER58A DNA MER1_type 0 224 19 3653 137 19 64 chr12 99239058 99239327 -45043162 + MER39 LTR ERV1 1 281 -426 2217 96 3 7 chr12 99239327 99239619 -45042870 + AluSc SINE Alu 1 291 -18 3653 137 19 64 chr12 99239619 99240046 -45042443 + MER39 LTR ERV1 281 707 0 1239 275 102 9 chr12 99240084 99240546 -45041943 + LTR33 LTR ERVL 1 505 -16 407 315 0 0 chr12 99240607 99240715 -45041774 + MLT1K LTR MaLR 128 235 -353 870 160 65 18 chr12 99240715 99240884 -45041605 - AluSg/x SINE Alu -12 300 124 382 272 88 0 chr12 99241754 99241868 -45040621 + MER117 DNA MER1_type 1 124 -73 1867 133 104 68 chr12 99242279 99242694 -45039795 + MER34C LTR ERV1 5 434 -151 2767 130 24 0 chr12 99242713 99243135 -45039354 - MSTB1 LTR MaLR 0 432 1 1507 207 128 26 chr12 99243233 99243687 -45038802 + LTR48B LTR ERV1 145 644 0 673 118 118 44 chr12 99243688 99243824 -45038665 + MER34C LTR ERV1 440 585 0 526 249 39 34 chr12 99243900 99244105 -45038384 + LTR67 LTR ERVL 331 536 -21 21 36 0 0 chr12 99244184 99244212 -45038277 + AT_rich Low_complexity Low_complexity 1 28 0 268 311 6 85 chr12 99245027 99245191 -45037298 + L1MEc LINE L1 37 187 -6209 1295 207 24 99 chr12 99245713 99246095 -45036394 - MLT1A1 LTR MaLR -12 353 1 3370 267 71 25 chr12 99246117 99247135 -45035354 + L1MEc LINE L1 706 1676 -4539 2083 148 7 0 chr12 99247135 99247439 -45035050 + AluSx SINE Alu 1 306 -6 3370 267 71 25 chr12 99247439 99249042 -45033447 + L1MEc LINE L1 1676 3627 -2588 1651 125 29 0 chr12 99249514 99249754 -45032735 + AluSx SINE Alu 5 251 -61 3322 134 82 37 chr12 99251211 99251836 -45030653 + MER39B LTR ERV1 1 653 0 1364 157 78 0 chr12 99252032 99252300 -45030189 - L1MB2 LINE L1 -140 6031 5743 878 214 30 39 chr12 99252520 99252723 -45029766 - MLT1I LTR MaLR -2 407 164 7994 19 0 3 chr12 99252723 99254216 -45028273 - L1PA2 LINE L1 0 6155 4665 878 214 30 39 chr12 99254216 99254379 -45028110 - MLT1I LTR MaLR -245 164 1 446 204 20 10 chr12 99255482 99255580 -45026909 + MER103 DNA DNA 19 117 -49 2106 123 27 0 chr12 99256446 99256746 -45025743 + AluSq SINE Alu 1 308 -5 538 107 57 74 chr12 99256937 99257059 -45025430 + L1PA4 LINE L1 6035 6154 -1 435 274 73 18 chr12 99257119 99257179 -45025310 + MER104 DNA Tc2 5 60 -1838 1531 177 86 46 chr12 99257179 99257529 -45024960 - MLT1A1 LTR MaLR 0 365 2 435 274 73 18 chr12 99257529 99257632 -45024857 + MER104 DNA Tc2 60 177 -3 21 0 0 0 chr12 99257749 99257770 -45024719 + AT_rich Low_complexity Low_complexity 1 21 0 363 176 7 155 chr12 99258087 99258235 -45024254 - LTR67 LTR ERVL 0 557 432 405 285 89 0 chr12 99260183 99260306 -45022183 + MER117 DNA MER1_type 2 135 -62 1050 264 134 41 chr12 99261093 99261555 -45020934 + MLT1J LTR MaLR 1 505 -6 2483 84 0 0 chr12 99261603 99261901 -45020588 + AluSc SINE Alu 1 298 -11 2082 75 4 0 chr12 99261901 99262156 -45020333 + AluSg SINE Alu 1 256 -54 985 67 0 0 chr12 99262157 99262276 -45020213 + AluSc SINE Alu 186 304 -5 1001 177 6 0 chr12 99262357 99262521 -45019968 + FRAM SINE Alu 1 165 -11 429 340 122 16 chr12 99262662 99262974 -45019515 + L3 LINE CR1 182 526 -1051 355 307 170 29 chr12 99263032 99263338 -45019151 + L3 LINE CR1 962 1310 -267 208 309 18 0 chr12 99263351 99263406 -45019083 - MIR SINE MIR -109 99 44 2378 106 0 0 chr12 99263717 99264028 -45018461 + AluSp SINE Alu 1 311 -2 340 277 130 51 chr12 99264069 99264246 -45018243 + MIR3 SINE MIR 8 198 -10 711 270 6 0 chr12 99264811 99264985 -45017504 - MIR SINE MIR -10 252 78 441 298 67 35 chr12 99265386 99265671 -45016818 - L2 LINE L2 -350 2964 2671 229 211 0 132 chr12 99265687 99265763 -45016726 + MLT1L LTR MaLR 42 107 -508 282 348 37 5 chr12 99266078 99266265 -45016224 - L2 LINE L2 -661 2653 2461 1121 286 75 14 chr12 99266878 99267361 -45015128 + LTR33 LTR ERVL 4 515 -6 862 304 47 0 chr12 99267492 99267749 -45014740 - LTR16B LTR ERVL -124 340 72 212 344 8 70 chr12 99269476 99269604 -45012885 + MIR SINE MIR 23 142 -66 869 146 0 0 chr12 99270027 99270157 -45012332 - FLAM_C SINE Alu -3 130 1 290 317 63 70 chr12 99270157 99270602 -45011887 - MLT1K LTR MaLR -6 582 141 1935 222 23 67 chr12 99270687 99271242 -45011247 - LTR26B LTR ERV1 0 531 1 2423 71 0 26 chr12 99271328 99271638 -45010851 - AluY SINE Alu -9 302 1 21 0 0 0 chr12 99272555 99272576 -45009913 + AT_rich Low_complexity Low_complexity 1 21 0 904 245 64 39 chr12 99272825 99273232 -45009257 + MLT1D LTR MaLR 21 460 -7 311 208 57 0 chr12 99273535 99273588 -45008901 + MLT1I LTR MaLR 228 283 -126 1758 161 0 11 chr12 99273746 99274019 -45008470 - AluJb SINE Alu -25 287 18 321 271 24 0 chr12 99274020 99274105 -45008384 - MIR SINE MIR -115 147 61 777 176 0 0 chr12 99274904 99275080 -45007409 + GA-rich Low_complexity Low_complexity 3 178 0 911 128 0 17 chr12 99275114 99275293 -45007196 + (GGGA)n Simple_repeat Simple_repeat 1 176 0 198 233 0 0 chr12 99275303 99275363 -45007126 + GA-rich Low_complexity Low_complexity 3 62 0 599 210 6 0 chr12 99275395 99275571 -45006918 + GA-rich Low_complexity Low_complexity 4 180 0 367 332 98 53 chr12 99275722 99276247 -45006242 - L2 LINE L2 -4 3309 2760 1275 173 0 17 chr12 99276255 99276486 -45006003 + AluSg/x SINE Alu 83 309 -1 273 279 81 43 chr12 99276559 99276720 -45005769 - L2 LINE L2 -598 2716 2550 349 336 93 0 chr12 99277020 99277160 -45005329 + L3 LINE CR1 1027 1179 -398 2799 10 0 0 chr12 99277309 99277609 -45004880 - AluY SINE Alu -11 300 1 960 172 37 0 chr12 99277779 99277942 -45004547 + MLT1F1 LTR MaLR 397 565 -2 703 289 48 26 chr12 99277944 99278416 -45004073 + MLT1F1-int LTR MaLR 1 601 -770 460 341 64 0 chr12 99278669 99278842 -45003647 + MLT1F1-int LTR MaLR 697 880 -491 3805 150 7 10 chr12 99278913 99279512 -45002977 - MER39B LTR ERV1 -56 597 1 533 294 58 97 chr12 99279553 99279809 -45002680 + MLT1F1-int LTR MaLR 961 1197 -174 918 127 0 8 chr12 99279809 99279943 -45002546 + FLAM_C SINE Alu 1 133 0 533 294 58 97 chr12 99279943 99280098 -45002391 + MLT1F1-int LTR MaLR 1197 1356 -15 584 170 19 0 chr12 99280103 99280209 -45002280 + MLT1F1 LTR MaLR 1 108 -459 8040 162 10 12 chr12 99280221 99281995 -45000494 - L1PB3 LINE L1 -4 6150 4382 1589 185 51 0 chr12 99281995 99282287 -45000202 - AluJb SINE Alu -5 307 1 8040 162 10 12 chr12 99282287 99282960 -44999529 - L1PB3 LINE L1 -1772 4382 3709 232 185 37 19 chr12 99282960 99283014 -44999475 + MLT1F1 LTR MaLR 92 146 -421 328 283 42 68 chr12 99283057 99283248 -44999241 - LTR68 LTR ERV1 -52 688 503 279 167 0 0 chr12 99283551 99283617 -44998872 + (TA)n Simple_repeat Simple_repeat 2 67 0 1633 200 38 5 chr12 99283620 99283994 -44998495 + MLT1F1 LTR MaLR 132 567 0 332 62 21 21 chr12 99283998 99284046 -44998443 + LTR67 LTR ERVL 510 557 0 702 290 56 40 chr12 99284102 99284405 -44998084 + L3 LINE CR1 1268 1575 -2 2442 104 96 13 chr12 99285232 99285627 -44996862 + MSTA LTR MaLR 1 428 0 252 214 14 57 chr12 99285889 99285959 -44996530 - MIR SINE MIR -95 113 47 3506 278 125 18 chr12 99285974 99286911 -44995578 + L2 LINE L2 1397 2232 -1081 1800 195 44 88 chr12 99286911 99287455 -44995034 - MLT2B1 LTR ERVL 0 520 1 3506 278 125 18 chr12 99287455 99288081 -44994408 + L2 LINE L2 2232 3135 -178 2361 100 0 0 chr12 99288148 99288449 -44994040 + AluSq SINE Alu 1 301 -12 393 244 0 0 chr12 99288461 99288543 -44993946 + Tigger5 DNA MER2_type 9 90 -2233 1264 233 3 0 chr12 99288567 99288855 -44993634 - L1ME2 LINE L1 -183 5981 5693 1202 247 41 11 chr12 99288882 99289251 -44993238 - L1ME2 LINE L1 -2128 4018 3639 424 198 79 24 chr12 99289476 99289602 -44992887 - L1MB5 LINE L1 -8 6166 6034 495 187 86 43 chr12 99291477 99291616 -44990873 + Charlie2 DNA MER1_type 1844 1988 -874 1857 124 67 0 chr12 99291621 99291888 -44990601 + AluJb SINE Alu 1 285 -27 1002 180 18 31 chr12 99292119 99292341 -44990148 - AluSx SINE Alu -93 219 1 841 174 32 7 chr12 99292345 99292500 -44989989 - MER33 DNA MER1_type -165 159 1 470 252 59 0 chr12 99293178 99293313 -44989176 - MIR SINE MIR -36 226 84 517 256 21 109 chr12 99295255 99295493 -44986996 + MIR SINE MIR 9 225 -37 434 326 106 31 chr12 99295701 99296087 -44986402 + L2 LINE L2 2245 2659 -655 1741 107 0 32 chr12 99296136 99296388 -44986101 + AluY SINE Alu 64 307 -4 515 106 117 0 chr12 99296406 99296500 -44985989 - MER4E LTR ERV1 -182 584 480 515 191 96 29 chr12 99296616 99296752 -44985737 + Charlie8 DNA MER1_type 1 145 -2272 496 328 65 9 chr12 99296800 99297032 -44985457 - MIR SINE MIR 0 262 18 605 285 86 85 chr12 99298035 99298698 -44983791 + L2 LINE L2 2193 2853 -419 2535 54 3 3 chr12 99298698 99298995 -44983494 - AluY SINE Alu -14 297 1 605 285 86 85 chr12 99298995 99299404 -44983085 + L2 LINE L2 2853 3260 -12 251 378 9 10 chr12 99300058 99300195 -44982294 + MIR SINE MIR 32 166 -63 1980 161 13 0 chr12 99300679 99300977 -44981512 + AluJb SINE Alu 1 302 -10 2255 122 0 0 chr12 99301088 99301383 -44981106 - AluSx SINE Alu -17 295 1 248 286 101 36 chr12 99301410 99301578 -44980911 - MIR SINE MIR -70 192 14 194 294 0 0 chr12 99302002 99302053 -44980436 + MIR SINE MIR 104 154 -108 2897 137 2 2 chr12 99302347 99302772 -44979717 - MER61B LTR ERV1 0 425 1 745 204 80 44 chr12 99302982 99303212 -44979277 + MLT1F LTR MaLR 1 267 -300 1630 171 0 49 chr12 99303284 99303589 -44978900 - AluJo SINE Alu -6 306 17 248 89 0 22 chr12 99304223 99304268 -44978221 + (GGAAA)n Simple_repeat Simple_repeat 2 45 0 2428 83 0 13 chr12 99304688 99305001 -44977488 - AluSg SINE Alu -1 309 1 2131 112 10 10 chr12 99305001 99305297 -44977192 - AluSx SINE Alu -16 296 1 216 0 0 0 chr12 99305829 99305853 -44976636 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 260 362 11 0 chr12 99307095 99307189 -44975300 + L2 LINE L2 3197 3291 -22 494 259 76 117 chr12 99307717 99308137 -44974352 + HAL1 LINE L1 838 1240 -1267 20657 144 30 32 chr12 99308148 99315777 -44966712 + L1MA1 LINE L1 16 7624 -97 2871 262 34 32 chr12 99316194 99317018 -44965471 - L1M4b LINE L1 -6013 846 21 863 262 74 83 chr12 99317063 99317918 -44964571 - L1MEc LINE L1 -4890 1371 525 492 254 22 112 chr12 99318046 99318322 -44964167 - L1MEc LINE L1 -5539 531 281 252 0 0 0 chr12 99318427 99318455 -44964034 + (TG)n Simple_repeat Simple_repeat 1 28 0 186 43 0 0 chr12 99318457 99318480 -44964009 + (GA)n Simple_repeat Simple_repeat 2 24 0 569 278 122 10 chr12 99318861 99319149 -44963340 - L1ME LINE L1 -337 5784 5465 24 0 0 0 chr12 99319729 99319753 -44962736 + AT_rich Low_complexity Low_complexity 1 24 0 3456 252 135 27 chr12 99319765 99321255 -44961234 + HAL1 LINE L1 10 1660 -847 1214 184 95 48 chr12 99321256 99321440 -44961049 - MER2 DNA MER2_type -15 330 123 1462 181 67 11 chr12 99321440 99321722 -44960767 + AluJb SINE Alu 1 298 -14 1214 184 95 48 chr12 99321722 99321852 -44960637 - MER2 DNA MER2_type -222 123 1 183 276 69 0 chr12 99322148 99322206 -44960283 - L2 LINE L2 -1 3312 3251 * 580 286 0 0 chr12 99322175 99322322 -44960167 - MIR SINE MIR -26 236 90 1471 202 41 0 chr12 99322792 99323059 -44959430 + AluJo SINE Alu 5 282 -30 21 89 0 0 chr12 99323249 99323305 -44959184 + AT_rich Low_complexity Low_complexity 1 56 0 432 0 0 0 chr12 99323497 99323545 -44958944 + (CA)n Simple_repeat Simple_repeat 1 48 0 341 188 82 0 chr12 99324369 99324454 -44958035 - MER103 DNA DNA -2 164 73 1792 147 30 7 chr12 99324992 99325291 -44957198 - THE1B LTR MaLR -58 306 1 237 108 0 0 chr12 99325322 99325359 -44957130 + L2 LINE L2 2530 2566 -748 1199 259 134 3 chr12 99325365 99325739 -44956750 - LTR16A LTR ERVL -5 445 23 979 298 97 28 chr12 99325744 99326084 -44956405 + L2 LINE L2 2558 2873 -399 1601 211 38 16 chr12 99326084 99326449 -44956040 - MER93b LTR ERV1 0 373 1 979 298 97 28 chr12 99326449 99326757 -44955732 + L2 LINE L2 2873 3268 -4 360 254 11 99 chr12 99327044 99327112 -44955377 + MER92C LTR ERV1 3 75 -479 1576 178 13 35 chr12 99327112 99327426 -44955063 + AluJb SINE Alu 1 307 -5 360 254 11 99 chr12 99327426 99327538 -44954951 + MER92C LTR ERV1 75 167 -387 490 127 0 0 chr12 99327590 99327661 -44954828 + MER92C LTR ERV1 484 554 0 617 165 17 9 chr12 99327767 99327882 -44954607 - MER39 LTR ERV1 -4 703 588 2995 127 153 9 chr12 99328085 99328613 -44953876 - MER39 LTR ERV1 -103 604 1 424 267 38 13 chr12 99328649 99328814 -44953675 + MER92B LTR ERV1 1 168 -386 343 157 29 14 chr12 99328872 99328942 -44953547 + MER92C LTR ERV1 484 554 0 984 169 90 15 chr12 99329379 99329580 -44952909 + MSTB1 LTR MaLR 217 432 0 318 301 68 73 chr12 99330611 99330830 -44951659 + L2 LINE L2 3052 3269 -3 2245 85 34 0 chr12 99331036 99331329 -44951160 + AluSc SINE Alu 1 303 -6 581 215 42 7 chr12 99331376 99331520 -44950969 - MIR SINE MIR -34 228 80 272 374 22 14 chr12 99331655 99331794 -44950695 + L2 LINE L2 3133 3272 0 2018 125 11 3 chr12 99331939 99332226 -44950263 - AluSq SINE Alu -20 293 5 24 53 0 0 chr12 99332231 99332269 -44950220 + AT_rich Low_complexity Low_complexity 1 38 0 233 180 0 66 chr12 99332282 99332343 -44950146 + L1ME4a LINE L1 5599 5655 -466 572 229 95 119 chr12 99332628 99333090 -44949399 + MLT1H LTR MaLR 95 545 -4 307 309 53 20 chr12 99333155 99333307 -44949182 + L1ME4a LINE L1 5668 5824 -297 232 200 200 22 chr12 99334117 99334207 -44948282 + L1ME4a LINE L1 5994 6099 -22 261 0 0 0 chr12 99334276 99334305 -44948184 + (CA)n Simple_repeat Simple_repeat 1 29 0 650 253 50 15 chr12 99335567 99335769 -44946720 - MIR SINE MIR -2 260 52 216 111 0 0 chr12 99336533 99336569 -44945920 + (TA)n Simple_repeat Simple_repeat 2 37 0 2268 116 0 0 chr12 99337382 99337683 -44944806 - AluSx SINE Alu -11 301 1 371 194 106 62 chr12 99338367 99338527 -44943962 - L2 LINE L2 -188 3084 2918 484 265 142 11 chr12 99338957 99339225 -44943264 - HAL1b LINE L1 -3 1345 1043 280 275 33 11 chr12 99339637 99339728 -44942761 - HAL1b LINE L1 -739 609 517 52 58 0 0 chr12 99339742 99339829 -44942660 + AT_rich Low_complexity Low_complexity 1 87 0 287 289 39 23 chr12 99339830 99339958 -44942531 - HAL1b LINE L1 -861 487 358 2254 98 0 10 chr12 99340027 99340323 -44942166 - AluY SINE Alu -18 293 1 396 0 0 0 chr12 99340516 99340560 -44941929 + (TG)n Simple_repeat Simple_repeat 2 45 0 4735 124 38 0 chr12 99340632 99340662 -44941827 + L1MB3 LINE L1 5445 5472 -711 225 0 0 0 chr12 99340662 99340687 -44941802 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4735 124 38 0 chr12 99340687 99341366 -44941123 + L1MB3 LINE L1 5472 6181 -2 828 188 0 0 chr12 99341571 99341699 -44940790 - FLAM_C SINE Alu -14 129 2 2021 129 0 14 chr12 99343120 99343451 -44939038 + AluSx SINE Alu 1 312 0 2146 118 10 0 chr12 99343462 99343766 -44938723 + AluSx SINE Alu 1 307 -5 226 310 35 0 chr12 99343776 99343863 -44938626 - MER113 DNA MER1_type? -425 96 7 620 276 87 105 chr12 99345557 99346315 -44936174 + L1ME LINE L1 3436 4167 -1979 2118 81 4 4 chr12 99346315 99346588 -44935901 + AluSp SINE Alu 38 310 -3 620 276 87 105 chr12 99346588 99346970 -44935519 + L1ME LINE L1 4167 4555 -1591 234 264 90 52 chr12 99347000 99347212 -44935277 + L1ME LINE L1 4878 5097 -1049 262 286 153 30 chr12 99347353 99347654 -44934835 + L1ME LINE L1 5279 5584 -582 1698 151 0 60 chr12 99348071 99348388 -44934101 + AluJb SINE Alu 1 298 -14 273 146 0 0 chr12 99348600 99348648 -44933841 + (GGGA)n Simple_repeat Simple_repeat 4 51 0 195 26 103 0 chr12 99348724 99348763 -44933726 + (GAGTG)n Simple_repeat Simple_repeat 3 45 0 204 40 0 0 chr12 99348905 99348930 -44933559 + (A)n Simple_repeat Simple_repeat 1 25 0 461 331 50 19 chr12 99349213 99349373 -44933116 + MIR3 SINE MIR 7 171 -37 2154 102 7 0 chr12 99349583 99349867 -44932622 + AluSx SINE Alu 7 292 -20 243 0 0 0 chr12 99349870 99349897 -44932592 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 703 254 161 78 chr12 99349999 99350408 -44932081 + L2 LINE L2 2871 3313 0 909 274 100 42 chr12 99351504 99352055 -44930434 + HAL1b LINE L1 75 657 -691 900 199 23 6 chr12 99352062 99352238 -44930251 + MER97b DNA MER1_type? 1 179 -874 358 270 68 7 chr12 99352284 99352357 -44930132 + HAL1b LINE L1 661 728 -620 2248 108 3 0 chr12 99352357 99352653 -44929836 + AluSp SINE Alu 1 297 -16 358 270 68 7 chr12 99352653 99352727 -44929762 + HAL1b LINE L1 728 817 -531 445 269 38 25 chr12 99352735 99352895 -44929594 + HAL1b LINE L1 752 913 -435 568 285 73 63 chr12 99352903 99353300 -44929189 - MLT1I LTR MaLR -8 401 1 697 259 74 69 chr12 99353348 99353514 -44928975 + HAL1b LINE L1 961 1125 -223 1572 172 27 27 chr12 99353514 99353811 -44928678 + AluJb SINE Alu 9 305 -7 697 259 74 69 chr12 99353811 99354022 -44928467 + HAL1b LINE L1 1125 1340 -8 291 160 0 0 chr12 99354053 99354103 -44928386 - ORSL DNA AcHobo -225 50 1 523 345 67 30 chr12 99354893 99355299 -44927190 + L3 LINE CR1 639 1059 -518 276 318 91 0 chr12 99355431 99355519 -44926970 + L2 LINE L2 3145 3240 -32 27 29 0 0 chr12 99355731 99355765 -44926724 + AT_rich Low_complexity Low_complexity 1 34 0 1995 145 7 0 chr12 99355767 99356070 -44926419 - 7SLRNA srpRNA srpRNA -15 305 1 322 241 25 13 chr12 99356179 99356258 -44926231 - L2 LINE L2 -4 3309 3230 227 297 47 0 chr12 99356332 99356396 -44926093 - MIR3 SINE MIR -49 159 93 273 179 89 0 chr12 99356764 99356820 -44925669 + MER112 DNA MER1_type 200 260 0 331 315 9 19 chr12 99356826 99356934 -44925555 + L2 LINE L2 2980 3086 -186 1972 119 7 3 chr12 99357155 99357460 -44925029 + AluSx SINE Alu 2 312 0 488 264 93 0 chr12 99357522 99357662 -44924827 + Charlie8 DNA MER1_type 1 153 -2264 3036 199 41 51 chr12 99358257 99359140 -44923349 + L1ME1 LINE L1 4592 5463 -703 1538 89 136 39 chr12 99359143 99359401 -44923088 + L1MB1 LINE L1 5885 6167 -1 * 2636 240 38 13 chr12 99359396 99360084 -44922405 + L1ME1 LINE L1 5457 6161 -5 512 150 0 0 chr12 99360229 99360309 -44922180 + MER116 DNA Mariner 1 80 0 424 306 41 12 chr12 99361686 99361856 -44920633 - MIR SINE MIR -68 194 20 339 65 0 0 chr12 99362704 99362750 -44919739 + (TG)n Simple_repeat Simple_repeat 2 47 0 2293 102 10 0 chr12 99363829 99364133 -44918356 - AluSq SINE Alu -6 307 1 2252 90 21 0 chr12 99365016 99365304 -44917185 - AluSx SINE Alu -18 294 1 750 104 5 183 chr12 99365304 99365506 -44916983 - LTR39 LTR ERV1 -616 167 2 1504 193 166 25 chr12 99365971 99366230 -44916259 - LTR54B LTR ERV1 -2 496 275 2246 180 82 63 chr12 99366230 99366831 -44915658 + LTR9 LTR ERV1 1 612 0 1504 193 166 25 chr12 99366831 99367006 -44915483 - LTR54B LTR ERV1 -223 275 1 216 357 0 29 chr12 99367215 99367355 -44915134 + CT-rich Low_complexity Low_complexity 6 141 0 511 123 271 0 chr12 99367457 99367579 -44914910 - MER53 DNA DNA -10 179 25 423 124 67 11 chr12 99367505 99367594 -44914895 + MER53 DNA DNA 96 189 0 * 1875 163 7 0 chr12 99367714 99368002 -44914487 - AluJo SINE Alu -21 291 2 1098 128 30 98 chr12 99369313 99369548 -44912941 - MER20 DNA MER1_type 0 219 1 263 302 62 0 chr12 99369620 99369749 -44912740 + MIR SINE MIR 79 215 -47 2210 112 20 0 chr12 99369802 99370098 -44912391 - AluSx SINE Alu -10 302 1 805 144 53 37 chr12 99371303 99371490 -44910999 + MER96B DNA MER1_type? 1 190 -227 229 229 60 24 chr12 99371635 99371718 -44910771 + MIR SINE MIR 107 192 -70 414 240 56 40 chr12 99371894 99372046 -44910443 + MIR SINE MIR 3 155 -62 340 45 0 0 chr12 99372182 99372226 -44910263 - MER4E LTR ERV1 -5 774 731 2032 124 11 0 chr12 99372228 99372511 -44909978 - AluSx SINE Alu -23 289 4 1861 86 8 0 chr12 99372663 99372919 -44909570 + L1PA4 LINE L1 5896 6153 -2 611 128 21 0 chr12 99372936 99373030 -44909459 + AluY SINE Alu 207 302 -9 560 261 73 47 chr12 99373030 99373413 -44909076 + L1MC5 LINE L1 7515 7907 -54 387 0 0 0 chr12 99373647 99373690 -44908799 + (TTA)n Simple_repeat Simple_repeat 2 44 0 29 28 0 0 chr12 99373815 99373851 -44908638 + AT_rich Low_complexity Low_complexity 1 36 0 1595 167 0 60 chr12 99374197 99374514 -44907975 + AluJb SINE Alu 1 298 -14 264 149 0 0 chr12 99374727 99374774 -44907715 + (GGGA)n Simple_repeat Simple_repeat 1 47 0 195 42 0 0 chr12 99375031 99375055 -44907434 + (A)n Simple_repeat Simple_repeat 1 24 0 498 143 31 118 chr12 99375348 99375509 -44906980 + L1MA7 LINE L1 6143 6289 -2 180 0 0 0 chr12 99375576 99375596 -44906893 + (T)n Simple_repeat Simple_repeat 1 20 0 717 175 165 19 chr12 99376330 99376536 -44905953 - MIR SINE MIR -26 236 1 409 201 63 75 chr12 99377324 99377483 -44905006 + L1MC5 LINE L1 7751 7907 -54 1646 279 167 23 chr12 99377499 99378900 -44903589 + L2 LINE L2 1699 3312 -1 2060 119 17 0 chr12 99380003 99380297 -44902192 + AluSq SINE Alu 1 299 -14 685 226 54 54 chr12 99382093 99382314 -44900175 - MIR SINE MIR -34 228 8 215 250 42 0 chr12 99382694 99382742 -44899747 + G-rich Low_complexity Low_complexity 1 50 0 227 102 102 41 chr12 99383669 99383718 -44898771 - MLT2A2 LTR ERVL 0 453 402 2173 169 74 54 chr12 99383745 99384082 -44898407 - MLT2B2 LTR ERVL -20 495 143 1657 115 144 38 chr12 99384082 99384262 -44898227 + THE1C LTR MaLR 1 160 -215 180 0 0 0 chr12 99384262 99384282 -44898207 + (TC)n Simple_repeat Simple_repeat 2 21 0 1657 115 144 38 chr12 99384282 99384440 -44898049 + THE1C LTR MaLR 160 375 0 2173 169 74 54 chr12 99384440 99384587 -44897902 - MLT2B2 LTR ERVL -372 143 1 556 247 70 63 chr12 99384616 99384884 -44897605 - L1MC5 LINE L1 -393 7415 7241 452 239 68 13 chr12 99384878 99385059 -44897430 - L1MC5 LINE L1 -747 7214 7071 * 2284 120 0 0 chr12 99385070 99385379 -44897110 - AluSx SINE Alu -3 309 1 4799 86 19 1 chr12 99385390 99386057 -44896432 - L1PB2 LINE L1 -4 6147 5469 1043 239 82 37 chr12 99386803 99387158 -44895331 + MLT1J1 LTR MaLR 18 388 -58 1383 204 53 22 chr12 99387373 99387813 -44894676 + MLT1D LTR MaLR 1 505 0 234 81 0 0 chr12 99389258 99389295 -44893194 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 2430 87 3 3 chr12 99389854 99390163 -44892326 + AluSg SINE Alu 1 309 -1 377 185 65 19 chr12 99390270 99390378 -44892111 - Charlie2a DNA MER1_type 0 2862 2750 835 268 61 4 chr12 99390378 99390624 -44891865 - Charlie2a DNA MER1_type -1863 999 740 509 223 211 0 chr12 99390747 99390922 -44891567 - Charlie2a DNA MER1_type -2604 258 47 363 337 117 15 chr12 99391186 99391450 -44891039 - L2 LINE L2 -15 3298 3008 675 237 69 102 chr12 99391482 99391845 -44890644 - L2 LINE L2 -6 3307 2957 2132 108 84 6 chr12 99391869 99392201 -44890288 - THE1B LTR MaLR -6 358 1 2128 133 3 0 chr12 99392593 99392894 -44889595 - AluSq SINE Alu -11 302 1 462 279 28 34 chr12 99393061 99393240 -44889249 + MIR3 SINE MIR 21 198 -10 2582 70 0 6 chr12 99393947 99394262 -44888227 + AluSp SINE Alu 1 313 0 351 361 27 11 chr12 99395177 99395360 -44887129 + MIR SINE MIR 2 187 -75 3158 124 42 85 chr12 99395364 99396011 -44886478 + L1MC2 LINE L1 5542 6160 -184 824 91 0 18 chr12 99396097 99396207 -44886282 + AluSq/x SINE Alu 26 133 -180 216 141 62 78 chr12 99398320 99398384 -44884105 + MIR SINE MIR 22 84 -124 1720 235 79 13 chr12 99398628 99399329 -44883160 + MER20B DNA MER1_type 2 783 0 241 208 0 19 chr12 99399377 99399430 -44883059 - MIR3 SINE MIR -42 166 115 1362 144 17 122 chr12 99399681 99399880 -44882609 - MER33 DNA MER1_type -2262 323 176 2046 115 0 34 chr12 99399880 99400206 -44882283 - AluSx SINE Alu 0 316 1 1362 144 17 122 chr12 99400206 99400366 -44882123 - MER33 DNA MER1_type -2409 176 1 470 252 59 0 chr12 99401044 99401179 -44881310 - MIR SINE MIR -36 226 84 517 256 21 109 chr12 99403121 99403359 -44879130 + MIR SINE MIR 9 225 -37 434 326 106 31 chr12 99403567 99403953 -44878536 + L2 LINE L2 2245 2659 -655 1878 80 0 32 chr12 99404002 99404251 -44878238 + AluY SINE Alu 64 304 -7 216 359 0 26 chr12 99404383 99404461 -44878028 + L2 LINE L2 2656 2731 -583 321 282 75 69 chr12 99404635 99404683 -44877806 - MIR3 SINE MIR -10 198 152 829 290 45 18 chr12 99404683 99405014 -44877475 + MER102b DNA MER1_type 1 340 -1 321 282 75 69 chr12 99405014 99405153 -44877336 - MIR3 SINE MIR -56 152 10 2262 112 0 0 chr12 99405515 99405809 -44876680 + AluSx SINE Alu 1 294 -18 2250 109 10 0 chr12 99406692 99406996 -44875493 + AluSq SINE Alu 1 307 -6 339 65 0 0 chr12 99408076 99408122 -44874367 + (CA)n Simple_repeat Simple_repeat 2 47 0 1435 218 139 51 chr12 99408901 99409487 -44873002 + MLT1E2 LTR MaLR 1 626 0 22 0 0 0 chr12 99409659 99409681 -44872808 + AT_rich Low_complexity Low_complexity 1 22 0 1200 178 9 4 chr12 99409969 99410194 -44872295 + AluJb SINE Alu 78 303 -9 22 88 0 0 chr12 99411089 99411146 -44871343 + GC_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr12 99413006 99413029 -44869460 + AT_rich Low_complexity Low_complexity 1 23 0 26 93 0 0 chr12 99414116 99414191 -44868298 + AT_rich Low_complexity Low_complexity 1 75 0 302 173 0 58 chr12 99414630 99414734 -44867755 + CT-rich Low_complexity Low_complexity 4 101 0 220 320 70 40 chr12 99416153 99416253 -44866236 - L3b LINE CR1 -64 1519 1417 276 257 20 69 chr12 99416739 99416840 -44865649 - L3b LINE CR1 -222 1361 1266 916 162 7 0 chr12 99417461 99417615 -44864874 - AluSg/x SINE Alu -22 288 134 843 189 0 0 chr12 99417774 99417906 -44864583 - FLAM_C SINE Alu 0 133 2 270 336 88 36 chr12 99417973 99418110 -44864379 - L2 LINE L2 -2 3270 3127 355 314 46 102 chr12 99418367 99419026 -44863463 - L2 LINE L2 -1 3271 2642 198 369 0 14 chr12 99419110 99419251 -44863238 + MIR SINE MIR 78 216 -46 335 169 92 0 chr12 99419254 99419319 -44863170 + L2 LINE L2 3191 3261 -52 488 125 0 11 chr12 99419319 99419407 -44863082 + (TGGA)n Simple_repeat Simple_repeat 3 89 0 300 237 26 13 chr12 99419409 99419487 -44863002 + GA-rich Low_complexity Low_complexity 1 76 -329 1738 164 13 3 chr12 99419487 99419785 -44862704 + AluJb SINE Alu 1 301 -11 300 237 26 13 chr12 99419785 99419809 -44862680 + GA-rich Low_complexity Low_complexity 76 405 0 506 338 64 5 chr12 99420376 99420580 -44861909 - MIR SINE MIR 0 262 47 791 238 94 9 chr12 99420677 99420900 -44861589 - MIR SINE MIR -12 250 9 2410 97 3 0 chr12 99421357 99421668 -44860821 - AluSp SINE Alu -1 312 1 2194 113 7 7 chr12 99422505 99422805 -44859684 + AluSx SINE Alu 1 300 -12 900 293 88 17 chr12 99422860 99423212 -44859277 - L1ME LINE L1 -341 5780 5404 380 299 178 5 chr12 99423254 99423451 -44859038 + MIR SINE MIR 20 250 -12 348 304 41 10 chr12 99423501 99423695 -44858794 - L1ME LINE L1 -773 5373 5174 2266 97 7 0 chr12 99423719 99424018 -44858471 - AluSp SINE Alu -12 301 1 816 231 11 24 chr12 99424293 99424566 -44857923 + MER46C DNA MER2_type 4 338 0 753 256 92 4 chr12 99424627 99424854 -44857635 - L1ME LINE L1 -2260 3886 3640 398 239 38 59 chr12 99424987 99425226 -44857263 - L1M4 LINE L1 -1511 4635 4402 417 257 131 65 chr12 99425385 99425630 -44856859 - L2 LINE L2 -1 3271 3011 2203 127 3 0 chr12 99427119 99427426 -44855063 + AluSq SINE Alu 1 308 -5 500 264 127 24 chr12 99427517 99427729 -44854760 + MIR SINE MIR 13 246 -16 2443 50 0 0 chr12 99428362 99428680 -44853809 + AluY SINE Alu 1 318 0 6682 132 167 47 chr12 99428905 99429125 -44853364 + L1MCa LINE L1 5 197 -6229 2114 119 3 13 chr12 99429125 99429428 -44853061 - AluJb SINE Alu -12 300 1 6682 132 167 47 chr12 99429428 99429797 -44852692 + L1MCa LINE L1 197 520 -5906 2948 193 12 93 chr12 99429797 99430549 -44851940 - LTR8 LTR ERV1 0 691 1 6682 132 167 47 chr12 99430549 99431402 -44851087 + L1MCa LINE L1 520 1621 -4805 2268 116 0 0 chr12 99431552 99431853 -44850636 - AluSx SINE Alu -11 301 1 371 194 106 62 chr12 99432537 99432697 -44849792 - L2 LINE L2 -188 3084 2918 484 265 142 11 chr12 99433127 99433395 -44849094 - HAL1b LINE L1 -3 1345 1043 280 275 33 11 chr12 99433807 99433898 -44848591 - HAL1b LINE L1 -739 609 517 52 58 0 0 chr12 99433912 99433999 -44848490 + AT_rich Low_complexity Low_complexity 1 87 0 287 289 39 23 chr12 99434000 99434128 -44848361 - HAL1b LINE L1 -861 487 358 2254 98 0 10 chr12 99434197 99434493 -44847996 - AluY SINE Alu -18 293 1 396 0 0 0 chr12 99434686 99434730 -44847759 + (TG)n Simple_repeat Simple_repeat 2 45 0 4735 124 38 0 chr12 99434802 99434832 -44847657 + L1MB3 LINE L1 5445 5472 -711 225 0 0 0 chr12 99434832 99434857 -44847632 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4735 124 38 0 chr12 99434857 99435536 -44846953 + L1MB3 LINE L1 5472 6181 -2 828 188 0 0 chr12 99435741 99435869 -44846620 - FLAM_C SINE Alu -14 129 2 2021 129 0 14 chr12 99437290 99437621 -44844868 + AluSx SINE Alu 1 312 0 1979 115 0 34 chr12 99437632 99437958 -44844531 + AluSx SINE Alu 1 316 0 719 148 33 71 chr12 99437975 99438157 -44844332 + Charlie5 DNA MER1_type 2410 2584 -28 261 246 0 16 chr12 99438408 99438469 -44844020 + MIR3 SINE MIR 115 174 -34 2360 231 130 13 chr12 99438509 99439210 -44843279 - MER20B DNA MER1_type 0 784 2 237 141 62 78 chr12 99439454 99439518 -44842971 - MIR SINE MIR -124 84 22 820 91 0 18 chr12 99441630 99441740 -44840749 - AluSq/x SINE Alu -179 133 26 1780 142 93 100 chr12 99441826 99442374 -44840115 - L1MC2 LINE L1 -184 6160 5617 1179 181 53 45 chr12 99444199 99444465 -44838024 - MER46C DNA MER2_type 0 338 71 316 209 116 0 chr12 99444470 99444556 -44837933 - MER46C DNA MER2_type -225 113 18 2160 109 3 26 chr12 99444925 99445236 -44837253 - AluSg SINE Alu -6 304 1 25 65 0 0 chr12 99445459 99445505 -44836984 + AT_rich Low_complexity Low_complexity 1 46 0 2206 115 3 6 chr12 99445763 99446077 -44836412 - AluSp SINE Alu 0 313 1 2028 105 4 7 chr12 99446666 99446943 -44835546 - AluSp SINE Alu -37 276 1 522 312 197 2 chr12 99447354 99447790 -44834699 - L2 LINE L2 -9 3263 2713 307 220 0 0 chr12 99448255 99448314 -44834175 + L2 LINE L2 3214 3272 0 598 190 147 147 chr12 99448620 99449083 -44833406 + LTR37B LTR ERV1 6 468 0 2060 131 7 0 chr12 99449919 99450217 -44832272 + AluSx SINE Alu 1 300 -12 2497 121 3 24 chr12 99450967 99451103 -44831386 - THE1B LTR MaLR 0 364 227 2616 123 28 14 chr12 99451103 99451462 -44831027 - THE1B LTR MaLR 0 364 1 2497 121 3 24 chr12 99451462 99451697 -44830792 - THE1B LTR MaLR -137 227 1 11218 101 39 18 chr12 99451697 99453245 -44829244 - THE1B-int LTR MaLR 0 1580 1 2716 120 3 11 chr12 99453245 99453612 -44828877 - THE1B LTR MaLR 0 364 1 347 303 38 52 chr12 99454428 99454639 -44827850 + L2 LINE L2 3103 3310 -3 455 219 0 0 chr12 99454908 99454990 -44827499 + L2 LINE L2 3231 3312 -1 563 316 28 5 chr12 99456121 99456339 -44826150 - L2 LINE L2 -581 2733 2511 26 50 0 0 chr12 99456812 99456852 -44825637 + AT_rich Low_complexity Low_complexity 1 40 0 24 67 0 0 chr12 99456875 99456920 -44825569 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr12 99457174 99457196 -44825293 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr12 99459018 99459048 -44823441 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 180 290 192 26 chr12 99459209 99459402 -44823087 - L2 LINE L2 -262 3051 2827 520 224 175 7 chr12 99459406 99459549 -44822940 + MER5B DNA MER1_type 1 167 -11 482 227 161 79 chr12 99459560 99459913 -44822576 - L2 LINE L2 -565 2749 2368 225 314 74 46 chr12 99461355 99461530 -44820959 - MIR SINE MIR -21 241 62 612 261 144 54 chr12 99462438 99462791 -44819698 - L2 LINE L2 -508 2806 2422 384 274 71 0 chr12 99465125 99465238 -44817251 + L2 LINE L2 3192 3312 -1 705 261 50 15 chr12 99465816 99466015 -44816474 - MIR SINE MIR -6 256 51 2587 233 62 79 chr12 99467018 99467417 -44815072 - L1ME3A LINE L1 -5 6165 5761 1825 157 7 16 chr12 99467417 99467722 -44814767 - AluJb SINE Alu -10 302 1 2587 233 62 79 chr12 99467722 99468435 -44814054 - L1ME3A LINE L1 -409 5761 5091 2674 20 0 7 chr12 99468435 99468735 -44813754 - AluY SINE Alu -13 298 1 2587 233 62 79 chr12 99468735 99469360 -44813129 - L1ME3A LINE L1 -1079 5091 4457 330 278 83 49 chr12 99469369 99469574 -44812915 - L1ME LINE L1 -287 5834 5623 260 235 117 39 chr12 99469639 99469826 -44812663 - L1M1 LINE L1 -829 5474 5267 298 370 115 5 chr12 99470085 99470285 -44812204 + MIR SINE MIR 20 241 -21 629 254 39 22 chr12 99471307 99471488 -44811001 + MIR SINE MIR 20 203 -59 815 279 142 50 chr12 99471505 99471567 -44810922 - MLT1J2 LTR MaLR -6 444 389 2105 137 92 9 chr12 99471567 99471903 -44810586 + THE1B LTR MaLR 1 364 0 815 279 142 50 chr12 99471903 99472152 -44810337 - MLT1J2 LTR MaLR -61 389 85 1821 127 3 59 chr12 99472152 99472475 -44810014 - AluJb SINE Alu -7 305 1 815 279 142 50 chr12 99472475 99472563 -44809926 - MLT1J2 LTR MaLR -365 85 7 542 308 6 6 chr12 99472638 99472794 -44809695 - MIR3 SINE MIR -3 205 50 191 381 0 10 chr12 99473065 99473162 -44809327 - L2 LINE L2 0 3272 3177 216 247 32 65 chr12 99473930 99474023 -44808466 - MIR SINE MIR -171 91 2 21 36 0 0 chr12 99474232 99474260 -44808229 + AT_rich Low_complexity Low_complexity 1 28 0 359 264 87 92 chr12 99474435 99474836 -44807653 - L1MC4a LINE L1 -1899 5909 5511 2390 169 99 8 chr12 99474918 99475403 -44807086 + L1MB8 LINE L1 5650 6178 0 208 264 0 0 chr12 99477827 99477880 -44804609 + A-rich Low_complexity Low_complexity 1 53 0 2239 95 10 3 chr12 99477931 99478227 -44804262 - AluSx SINE Alu -14 298 1 560 269 21 28 chr12 99478730 99478875 -44803614 - MIR SINE MIR -99 163 20 2014 115 0 57 chr12 99479080 99479394 -44803095 - AluSx SINE Alu -16 296 1 544 215 138 133 chr12 99479440 99479845 -44802644 + L1MC5 LINE L1 6827 7233 -728 616 257 12 87 chr12 99479858 99480222 -44802267 + L1MC5 LINE L1 7255 7488 -473 5503 29 8 0 chr12 99480225 99480840 -44801649 + L1PA4 LINE L1 5534 6153 -2 676 98 22 0 chr12 99480857 99480949 -44801540 + AluY SINE Alu 207 300 -11 627 255 73 44 chr12 99480949 99481333 -44801156 + L1MC5 LINE L1 7513 7907 -54 387 0 0 0 chr12 99481567 99481610 -44800879 + (TTA)n Simple_repeat Simple_repeat 2 44 0 193 250 0 21 chr12 99481610 99481658 -44800831 - MIR SINE MIR -124 138 92 29 28 0 0 chr12 99481735 99481771 -44800718 + AT_rich Low_complexity Low_complexity 1 36 0 758 254 129 35 chr12 99482604 99482836 -44799653 - MIR SINE MIR 0 262 9 190 240 210 0 chr12 99484110 99484210 -44798279 + MIR3 SINE MIR 13 133 -75 392 321 31 25 chr12 99484588 99484750 -44797739 + MIR SINE MIR 23 185 -77 262 211 70 56 chr12 99485205 99485276 -44797213 - L2 LINE L2 -15 3257 3186 759 283 20 75 chr12 99485354 99485647 -44796842 - MARNA DNA Mariner -103 483 207 24 0 0 0 chr12 99485647 99485671 -44796818 + AT_rich Low_complexity Low_complexity 1 24 0 204 269 19 0 chr12 99486127 99486179 -44796310 - L2 LINE L2 0 3313 3261 2300 119 74 8 chr12 99486436 99486788 -44795701 - THE1C LTR MaLR 0 375 1 188 287 168 20 chr12 99487023 99487124 -44795365 + MIR SINE MIR 19 134 -74 643 247 0 0 chr12 99487966 99488116 -44794373 + L1MA10 LINE L1 6182 6331 -3 1351 55 0 18 chr12 99488649 99488813 -44793676 + L1PA3 LINE L1 5995 6155 0 252 0 0 0 chr12 99489248 99489276 -44793213 + (CA)n Simple_repeat Simple_repeat 2 29 0 281 74 66 22 chr12 99489376 99489442 -44793047 + L1M2 LINE L1 5509 5580 -711 524 191 96 29 chr12 99489620 99489756 -44792733 - Charlie8 DNA MER1_type -2272 145 1 1575 72 44 160 chr12 99489872 99489982 -44792507 + MER4E LTR ERV1 480 601 -165 1865 144 43 7 chr12 99489982 99490281 -44792208 - AluSx SINE Alu -2 310 1 1575 72 44 160 chr12 99490281 99490442 -44792047 + MER4E LTR ERV1 601 711 -55 2077 120 7 0 chr12 99490442 99490726 -44791763 + AluSx SINE Alu 4 289 -23 1575 72 44 160 chr12 99490726 99490772 -44791717 + MER4E LTR ERV1 711 761 -5 457 240 56 40 chr12 99490908 99491060 -44791429 - MIR SINE MIR -62 146 3 252 229 60 24 chr12 99491236 99491319 -44791170 - MIR SINE MIR -70 192 107 813 144 53 37 chr12 99491464 99491651 -44790838 - MER96B DNA MER1_type? -227 190 1 2190 112 20 0 chr12 99492856 99493152 -44789337 + AluSx SINE Alu 1 302 -10 298 293 56 26 chr12 99493205 99493401 -44789088 - MIR SINE MIR -47 215 15 1179 128 30 98 chr12 99493406 99493641 -44788848 + MER20 DNA MER1_type 1 219 0 1857 163 7 0 chr12 99494952 99495240 -44787249 + AluJo SINE Alu 2 291 -21 432 124 67 11 chr12 99495360 99495449 -44787040 - MER53 DNA DNA 0 189 96 * 525 123 271 0 chr12 99495375 99495497 -44786992 + MER53 DNA DNA 25 179 -10 216 357 0 29 chr12 99495599 99495739 -44786750 + GA-rich Low_complexity Low_complexity 6 141 0 1511 193 166 25 chr12 99495948 99496123 -44786366 + LTR54B LTR ERV1 1 150 -348 2456 178 82 63 chr12 99496123 99496724 -44785765 - LTR9 LTR ERV1 0 612 1 1511 193 166 25 chr12 99496724 99496983 -44785506 + LTR54B LTR ERV1 150 496 -2 4972 133 5 66 chr12 99497448 99497650 -44784839 + LTR39 LTR ERV1 2 215 -568 2202 91 21 0 chr12 99497650 99497936 -44784553 + AluSx SINE Alu 1 292 -20 4972 133 5 66 chr12 99497936 99498566 -44783923 + LTR39 LTR ERV1 215 783 0 3194 144 50 24 chr12 99498873 99499243 -44783246 + MER41E LTR ERV1 1 389 -123 1741 135 67 0 chr12 99499243 99499357 -44783132 + AluJb SINE Alu 1 106 -206 333 0 0 0 chr12 99499357 99499394 -44783095 + (CA)n Simple_repeat Simple_repeat 2 38 0 1741 135 67 0 chr12 99499394 99499561 -44782928 + AluJb SINE Alu 106 301 -11 3194 144 50 24 chr12 99499561 99499689 -44782800 + MER41E LTR ERV1 389 512 0 190 342 19 57 chr12 99499734 99499892 -44782597 - MIR3 SINE MIR -56 152 1 * 742 239 19 0 chr12 99499892 99500030 -44782459 + MIR SINE MIR 51 191 -71 1782 160 7 13 chr12 99500031 99500331 -44782158 + AluJb SINE Alu 1 298 -14 2376 186 102 109 chr12 99500348 99500458 -44782031 + MER4E LTR ERV1 10 119 -660 869 119 8 37 chr12 99500458 99500592 -44781897 - FLAM_C SINE Alu -2 131 2 2376 186 102 109 chr12 99500592 99501257 -44781232 + MER4E LTR ERV1 119 779 0 210 239 70 28 chr12 99501257 99501328 -44781161 + MIR SINE MIR 189 262 0 4416 158 8 13 chr12 99501447 99502161 -44780328 - MER50 LTR ERV1 -23 711 1 353 274 146 34 chr12 99502355 99502657 -44779832 - MLT1J2 LTR MaLR -15 428 70 1163 255 90 48 chr12 99502831 99503375 -44779114 - L2 LINE L2 0 3313 2766 523 210 153 8 chr12 99503445 99503569 -44778920 - MER5A DNA MER1_type 0 189 48 1514 157 8 0 chr12 99503570 99503806 -44778683 + MLT1A1 LTR MaLR 1 238 -127 284 281 12 0 chr12 99503820 99503902 -44778587 + L2 LINE L2 2889 2971 -342 451 318 101 0 chr12 99503902 99504050 -44778439 + L2 LINE L2 2908 3070 -243 2211 113 0 0 chr12 99504152 99504445 -44778044 + AluSx SINE Alu 1 293 -19 661 189 25 0 chr12 99504454 99504576 -44777913 + MLT1A2 LTR MaLR 250 374 0 303 67 133 0 chr12 99504576 99504621 -44777868 - MER5A DNA MER1_type -138 51 1 6764 177 43 63 chr12 99504686 99504815 -44777674 - MER45R DNA AcHobo 0 1581 1451 1355 151 40 13 chr12 99504815 99505040 -44777449 + MER46A DNA MER2_type 2 232 -4 6764 177 43 63 chr12 99505040 99505732 -44776757 - MER45R DNA AcHobo -130 1451 747 2377 88 0 0 chr12 99505732 99506029 -44776460 - AluSx SINE Alu -15 297 1 6764 177 43 63 chr12 99506029 99506818 -44775671 - MER45R DNA AcHobo -834 747 1 257 241 35 0 chr12 99506923 99506981 -44775508 + MER58A DNA MER1_type 1 60 -164 1890 144 0 11 chr12 99507023 99507338 -44775151 - AluSg SINE Alu 0 312 1 1306 182 21 64 chr12 99507338 99507668 -44774821 - L1MA9 LINE L1 -60 6252 5937 874 192 58 0 chr12 99507672 99507844 -44774645 + MER58A DNA MER1_type 43 224 0 512 310 0 0 chr12 99507844 99507960 -44774529 + L2 LINE L2 3148 3263 -9 183 128 106 64 chr12 99508273 99508320 -44774169 - L2 LINE L2 0 3272 3224 470 221 52 94 chr12 99508530 99508733 -44773756 + LTR33A LTR ERVL 1 159 -364 503 301 0 14 chr12 99508771 99508914 -44773575 + MIR SINE MIR 109 249 -13 1728 164 7 0 chr12 99508917 99509224 -44773265 + AluJb SINE Alu 1 309 0 189 0 0 0 chr12 99509685 99509706 -44772783 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 2417 93 0 0 chr12 99510147 99510460 -44772029 - AluSp SINE Alu 0 313 1 698 246 121 15 chr12 99511410 99511609 -44770880 + MIR SINE MIR 40 259 -3 184 169 51 85 chr12 99511785 99511844 -44770645 - L2 LINE L2 -11 3261 3205 2249 141 49 54 chr12 99511997 99512388 -44770101 + MLT1B LTR MaLR 2 390 0 582 30 0 0 chr12 99512417 99512484 -44770005 + L1MB3 LINE L1 5804 5870 -313 6408 112 9 9 chr12 99512484 99513976 -44768513 + L1PA16 LINE L1 4678 6166 0 1631 154 59 7 chr12 99513977 99514283 -44768206 + L1MB3 LINE L1 5860 6181 -2 337 154 31 173 chr12 99514998 99515071 -44767418 + L1MC4 LINE L1 6939 6978 -1064 2196 121 0 7 chr12 99515071 99515369 -44767120 + AluSx SINE Alu 1 296 -16 337 154 31 173 chr12 99515369 99515457 -44767032 + L1MC4 LINE L1 6978 7077 -965 1425 198 36 181 chr12 99515459 99515836 -44766653 + L1MC4 LINE L1 7160 7590 -452 1956 142 3 10 chr12 99515836 99516139 -44766350 + AluSx SINE Alu 1 301 -11 1425 198 36 181 chr12 99516139 99516204 -44766285 + L1MC4 LINE L1 7590 7663 -379 804 152 0 16 chr12 99516204 99516329 -44766160 + FLAM_C SINE Alu 21 143 0 1425 198 36 181 chr12 99516329 99516579 -44765910 + L1MC4 LINE L1 7663 7900 -142 227 183 17 33 chr12 99516580 99516640 -44765849 + L1MC4 LINE L1 7984 8042 0 387 0 0 0 chr12 99516883 99516926 -44765563 + (TG)n Simple_repeat Simple_repeat 2 44 0 609 234 161 14 chr12 99517247 99517465 -44765024 + MIR SINE MIR 13 262 0 380 285 140 43 chr12 99517956 99518142 -44764347 + MIR SINE MIR 4 207 -55 2440 115 16 47 chr12 99518150 99518533 -44763956 - THE1C LTR MaLR 0 375 5 28 29 0 0 chr12 99518653 99518688 -44763801 + AT_rich Low_complexity Low_complexity 1 35 0 634 255 70 20 chr12 99518798 99518998 -44763491 + MLT1J LTR MaLR 39 248 -263 373 173 37 12 chr12 99519011 99519092 -44763397 + MLT1J LTR MaLR 412 494 -17 180 241 69 0 chr12 99519107 99519165 -44763324 + MIR3 SINE MIR 2 63 -145 264 307 0 0 chr12 99519560 99519635 -44762854 + MIR SINE MIR 179 253 -9 216 267 0 0 chr12 99519636 99519681 -44762808 + (ATG)n Simple_repeat Simple_repeat 3 47 0 206 238 109 99 chr12 99520237 99520295 -44762194 - MIR SINE MIR -109 153 92 753 213 67 0 chr12 99520295 99520459 -44762030 + MER69A DNA AcHobo 2 176 -1 206 238 109 99 chr12 99520459 99520501 -44761988 - MIR SINE MIR -170 92 52 2179 128 3 6 chr12 99521252 99521565 -44760924 - AluSx SINE Alu 0 312 1 1960 116 12 35 chr12 99522365 99522684 -44759805 + AluJo SINE Alu 1 312 0 2273 103 6 6 chr12 99522818 99523130 -44759359 - AluSp SINE Alu -1 312 1 232 319 53 53 chr12 99523635 99523804 -44758685 - MLT1K LTR MaLR -396 192 24 2261 120 0 0 chr12 99523991 99524290 -44758199 + AluSx SINE Alu 1 299 -13 684 275 192 33 chr12 99524352 99524894 -44757595 - HAL1 LINE L1 -408 2099 1472 1029 283 88 25 chr12 99524946 99525137 -44757352 - HAL1 LINE L1 -1198 1309 1131 3936 121 49 0 chr12 99525137 99525690 -44756799 + LTR19B LTR ERV1 1 580 0 1029 283 88 25 chr12 99525690 99526021 -44756468 - HAL1 LINE L1 -1376 1131 754 2192 155 80 0 chr12 99526164 99526525 -44755964 + MLT1B LTR MaLR 1 390 0 2123 134 3 3 chr12 99526892 99527197 -44755292 + AluSx SINE Alu 1 305 -7 238 293 101 10 chr12 99527197 99527296 -44755193 - L2 LINE L2 -30 3283 3176 760 307 85 22 chr12 99527403 99527804 -44754685 + LTR67 LTR ERVL 125 550 -7 409 333 8 0 chr12 99527989 99528109 -44754380 - L2 LINE L2 0 3313 3193 2900 85 3 6 chr12 99528327 99528690 -44753799 + THE1B LTR MaLR 1 362 -2 685 315 43 12 chr12 99529330 99529584 -44752905 - MIR SINE MIR 0 262 1 23 0 0 0 chr12 99529973 99529996 -44752493 + AT_rich Low_complexity Low_complexity 1 23 0 818 137 0 0 chr12 99530794 99530911 -44751578 - FLAM_C SINE Alu -26 117 1 667 128 47 7 chr12 99531044 99531192 -44751297 + GA-rich Low_complexity Low_complexity 3 156 0 258 239 15 15 chr12 99531195 99531262 -44751227 - L1ME4a LINE L1 -88 6033 5967 1540 158 60 49 chr12 99531327 99531612 -44750877 + AluJo SINE Alu 2 289 -23 2522 129 58 34 chr12 99531742 99532155 -44750334 + MER4B LTR ERV1 1 601 -165 2007 128 27 10 chr12 99532155 99532453 -44750036 - AluSx SINE Alu -9 303 1 2522 129 58 34 chr12 99532453 99532623 -44749866 + MER4B LTR ERV1 601 765 -1 893 229 5 0 chr12 99635139 99635327 -44647162 - L1MC4 LINE L1 -469 7573 7385 21 0 0 0 chr12 99635861 99635882 -44646607 + AT_rich Low_complexity Low_complexity 1 21 0 204 70 23 70 chr12 99636297 99636340 -44646149 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 252 333 54 9 chr12 99636471 99636582 -44645907 + L2 LINE L2 3165 3280 -33 2092 116 7 13 chr12 99636647 99636948 -44645541 - AluSx SINE Alu -13 299 1 244 231 77 0 chr12 99637016 99637081 -44645408 - L2 LINE L2 -12 3260 3191 1982 107 16 55 chr12 99637440 99637749 -44644740 + AluSx SINE Alu 1 297 -15 1918 135 0 85 chr12 99638293 99638634 -44643855 + AluJb SINE Alu 1 312 0 2959 58 0 0 chr12 99639280 99639639 -44642850 - L1P2 LINE L1 -343 5811 5453 2346 83 0 7 chr12 99640047 99640347 -44642142 - AluSc SINE Alu -11 298 1 23 33 0 0 chr12 99641077 99641107 -44641382 + AT_rich Low_complexity Low_complexity 1 30 0 184 238 0 95 chr12 99641558 99641621 -44640868 - MIR3 SINE MIR -12 196 140 1261 107 0 17 chr12 99642523 99642701 -44639788 + AluSg/x SINE Alu 85 259 -53 1803 168 0 28 chr12 99643629 99643950 -44638539 + AluSx SINE Alu 1 312 0 813 226 0 39 chr12 99643954 99644135 -44638354 + FRAM SINE Alu 1 169 -7 587 103 78 17 chr12 99644343 99644459 -44638030 + AluY SINE Alu 1 123 -188 2189 91 29 16 chr12 99645261 99645568 -44636921 - AluY SINE Alu 0 311 1 888 134 0 15 chr12 99645578 99645712 -44636777 - FRAM SINE Alu -20 156 25 1630 189 3 16 chr12 99645960 99646267 -44636222 + AluJo SINE Alu 1 303 -9 3062 135 21 17 chr12 99646295 99646778 -44635711 - MER31A LTR ERV1 0 485 1 220 276 0 17 chr12 99647186 99647244 -44635245 + L2 LINE L2 3237 3293 -20 1734 209 17 9 chr12 99647254 99647599 -44634890 + MLT1A1 LTR MaLR 15 362 -3 455 222 177 0 chr12 99647921 99648132 -44634357 - MER58 DNA MER1_type -8 2412 84 2439 90 0 10 chr12 99648133 99648444 -44634045 + AluSx SINE Alu 1 308 -4 2170 163 0 3 chr12 99648444 99648825 -44633664 + L1 LINE L1 4640 5019 -1127 947 150 0 0 chr12 99649597 99649730 -44632759 + FLAM_C SINE Alu 1 133 0 378 252 73 101 chr12 99649977 99650195 -44632294 - L2 LINE L2 0 3313 3102 1106 140 0 0 chr12 99650452 99650616 -44631873 - AluSg/x SINE Alu -18 292 129 320 280 3 26 chr12 99650733 99651041 -44631448 + G-rich Low_complexity Low_complexity 1 301 0 189 141 16 47 chr12 99651148 99651212 -44631277 + G-rich Low_complexity Low_complexity 2 63 0 893 204 0 0 chr12 99651281 99651443 -44631046 - AluSc SINE Alu -51 258 97 1401 172 107 4 chr12 99651633 99651883 -44630606 + AluJb SINE Alu 1 280 -32 468 0 0 0 chr12 99651883 99651935 -44630554 + (CA)n Simple_repeat Simple_repeat 2 53 0 1891 124 10 24 chr12 99651948 99652246 -44630243 + AluSx SINE Alu 2 295 -17 2315 97 0 0 chr12 99652332 99652630 -44629859 + AluSx SINE Alu 1 298 -14 905 134 0 0 chr12 99652668 99652795 -44629694 - FLAM_C SINE Alu -14 129 3 252 271 17 0 chr12 99652993 99653052 -44629437 - L2 LINE L2 -8 3264 3205 185 207 17 69 chr12 99653098 99653156 -44629333 + MIR SINE MIR 87 141 -67 22 0 0 0 chr12 99653333 99653355 -44629134 + AT_rich Low_complexity Low_complexity 1 22 0 294 286 12 12 chr12 99653646 99653730 -44628759 + Charlie2b DNA MER1_type 568 651 -2131 590 155 39 84 chr12 99653867 99654022 -44628467 + Charlie2b DNA MER1_type 2635 2782 0 212 333 124 0 chr12 99654714 99654819 -44627670 - L2 LINE L2 -16 3297 3180 200 211 0 53 chr12 99655453 99655510 -44626979 + A-rich Low_complexity Low_complexity 5 58 0 288 317 107 64 chr12 99655553 99655834 -44626655 - L2 LINE L2 -882 2432 2140 640 163 73 39 chr12 99656548 99656726 -44625763 + L1PA13 LINE L1 5980 6163 0 1700 173 0 7 chr12 99657218 99657536 -44624953 - AluJo SINE Alu 0 316 1 1296 305 45 26 chr12 99657765 99658188 -44624301 - MLT1C LTR MaLR -2 465 35 234 207 0 0 chr12 99659275 99659333 -44623156 + (CA)n Simple_repeat Simple_repeat 1 58 0 269 318 0 0 chr12 99659568 99659634 -44622855 - L2 LINE L2 -35 3237 3172 1386 149 82 78 chr12 99660183 99660464 -44622025 - AluJo SINE Alu -30 282 1 534 235 0 37 chr12 99660469 99660605 -44621884 - FLAM_A SINE Alu -1 132 2 4297 137 9 9 chr12 99660882 99661575 -44620914 - SVA Other Other -3 1383 691 2073 108 11 0 chr12 99662361 99662640 -44619849 + AluSx SINE Alu 21 302 -10 1222 155 0 0 chr12 99662725 99662912 -44619577 + AluJb SINE Alu 1 187 -125 973 271 73 26 chr12 99663303 99663686 -44618803 + L1ME LINE L1 5423 5823 -339 500 261 25 8 chr12 99663686 99663805 -44618684 - L2 LINE L2 -2 3311 3191 2202 125 0 0 chr12 99664061 99664364 -44618125 + AluSx SINE Alu 1 303 -9 234 258 15 15 chr12 99664521 99664587 -44617902 + L1MEc LINE L1 37 102 -6294 381 310 123 23 chr12 99665141 99665312 -44617177 + MIR SINE MIR 14 201 -61 2353 68 3 3 chr12 99665369 99665695 -44616794 - AluSp SINE Alu 0 313 1 261 302 116 16 chr12 99665701 99665830 -44616659 + MER5A DNA MER1_type 1 142 -47 1976 117 3 17 chr12 99665896 99666186 -44616303 - AluSx SINE Alu -25 287 2 2142 75 6 103 chr12 99666589 99666920 -44615569 - AluSq SINE Alu -14 299 1 2094 110 0 17 chr12 99666996 99667288 -44615201 + AluSc SINE Alu 11 297 -12 1448 165 26 68 chr12 99667553 99667862 -44614627 - AluJo SINE Alu -16 296 1 204 163 20 20 chr12 99668373 99668422 -44614067 + (CTATT)n Simple_repeat Simple_repeat 4 52 0 186 285 92 46 chr12 99668793 99668923 -44613566 + MIR SINE MIR 122 257 -5 399 259 129 0 chr12 99669453 99669592 -44612897 - MIR SINE MIR -18 244 88 485 190 121 35 chr12 99669970 99670086 -44612403 + FLAM_C SINE Alu 1 126 -7 1610 134 131 4 chr12 99670119 99670387 -44612102 - AluJo SINE Alu 0 302 1 259 325 50 0 chr12 99670585 99670665 -44611824 - MIR SINE MIR -87 121 38 383 164 55 82 chr12 99670958 99670981 -44611508 + LTR16A1 LTR ERVL 316 338 -119 2049 138 6 3 chr12 99670981 99671292 -44611197 - AluSx SINE Alu 0 312 1 383 164 55 82 chr12 99671292 99671414 -44611075 + LTR16A1 LTR ERVL 338 457 0 651 286 86 38 chr12 99671418 99671894 -44610595 - L2 LINE L2 -187 3126 2632 687 170 81 0 chr12 99672241 99672381 -44610108 + MIR SINE MIR 6 161 -47 888 184 0 0 chr12 99672384 99672531 -44609958 + FRAM SINE Alu 13 159 -17 2324 97 3 0 chr12 99673075 99673374 -44609115 - AluSc SINE Alu -9 300 1 285 255 108 15 chr12 99673374 99673546 -44608943 - L1MDa LINE L1 -4786 1640 1356 2144 165 0 23 chr12 99673546 99673891 -44608598 - MER1B DNA MER1_type 0 337 1 810 319 86 38 chr12 99673894 99674681 -44607808 - L1MDa LINE L1 -5543 1064 240 382 323 63 21 chr12 99675276 99675465 -44607024 + MIR SINE MIR 22 218 -44 579 181 10 5 chr12 99677230 99677345 -44605144 + L1MB7 LINE L1 6032 6142 -32 1547 159 4 16 chr12 99677368 99677619 -44604870 + AluSx SINE Alu 43 290 -22 247 59 0 0 chr12 99677619 99677653 -44604836 + L1MB7 LINE L1 6133 6166 -18 29 47 0 0 chr12 99678090 99678133 -44604356 + AT_rich Low_complexity Low_complexity 1 43 0 267 327 71 9 chr12 99678579 99678692 -44603797 - L2 LINE L2 -8 3264 3145 574 179 0 49 chr12 99679777 99679900 -44602589 + Tigger2a DNA MER2_type 1 117 -317 313 217 54 0 chr12 99681058 99681150 -44601339 + AluJ/FLAM SINE Alu 1 97 -205 205 109 0 109 chr12 99681476 99681522 -44600967 + (T)n Simple_repeat Simple_repeat 1 41 0 3018 128 8 30 chr12 99681527 99681716 -44600773 - L1PB1 LINE L1 -1 6150 5958 2032 146 3 3 chr12 99681716 99682018 -44600471 - AluSx SINE Alu -10 302 1 3018 128 8 30 chr12 99682018 99682334 -44600155 - L1PB1 LINE L1 -193 5958 5656 2371 92 0 9 chr12 99682553 99682869 -44599620 - AluSq SINE Alu 0 313 1 1016 213 18 0 chr12 99683222 99683386 -44599103 - FAM SINE Alu -8 167 1 2145 122 10 0 chr12 99684483 99684778 -44597711 - AluSx SINE Alu -12 300 3 22 0 0 0 chr12 99685522 99685544 -44596945 + AT_rich Low_complexity Low_complexity 1 22 0 214 286 118 34 chr12 99686410 99686529 -44595960 + MIR SINE MIR 18 146 -116 216 241 0 19 chr12 99687357 99687411 -44595078 + (TG)n Simple_repeat Simple_repeat 2 54 0 2042 123 0 7 chr12 99687726 99688011 -44594478 + AluSx SINE Alu 1 283 -29 290 25 0 25 chr12 99688014 99688054 -44594435 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 265 312 72 16 chr12 99688405 99688530 -44593959 + MIR SINE MIR 82 213 -49 214 314 35 58 chr12 99688560 99688646 -44593843 - L2 LINE L2 -6 3266 3183 754 128 9 0 chr12 99689384 99689493 -44592996 - FLAM_C SINE Alu -32 111 2 521 330 67 0 chr12 99690256 99690450 -44592039 + MIR SINE MIR 12 218 -44 303 264 74 16 chr12 99690959 99691080 -44591409 - L1M LINE L1 -940 5419 5292 238 308 53 0 chr12 99691100 99691233 -44591256 - L1M4 LINE L1 -810 5336 5197 1769 154 4 18 chr12 99691368 99691647 -44590842 - AluJo SINE Alu -37 275 1 1593 170 8 0 chr12 99691738 99692003 -44590486 + AluJb SINE Alu 17 283 -29 22 0 0 0 chr12 99692076 99692098 -44590391 + AT_rich Low_complexity Low_complexity 1 22 0 1181 194 9 9 chr12 99692357 99692568 -44589921 - MLT1A1 LTR MaLR -7 358 148 282 206 0 0 chr12 99692572 99692635 -44589854 + (TA)n Simple_repeat Simple_repeat 2 64 0 878 172 19 6 chr12 99692682 99692839 -44589650 - MLT1A1 LTR MaLR -206 159 1 232 252 88 102 chr12 99694105 99694146 -44588343 - MER5A DNA MER1_type -1 188 148 1440 204 48 70 chr12 99694146 99694519 -44587970 + MLT1A1 LTR MaLR 1 365 0 232 252 88 102 chr12 99694519 99694624 -44587865 - MER5A DNA MER1_type -41 148 44 186 43 0 0 chr12 99695677 99695700 -44586789 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 651 225 16 0 chr12 99695796 99695925 -44586564 + MER7A DNA MER2_type 1 129 -217 242 326 92 10 chr12 99696058 99696156 -44586333 - MIR3 SINE MIR -95 113 8 290 260 39 19 chr12 99696973 99697077 -44585412 - Charlie4 DNA MER1_type -32 1929 1824 251 190 52 17 chr12 99697187 99697245 -44585244 - AluS SINE Alu -243 60 1 33 90 0 0 chr12 99697767 99697856 -44584633 + AT_rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr12 99697920 99697942 -44584547 + AT_rich Low_complexity Low_complexity 1 22 0 552 60 0 0 chr12 99697942 99698009 -44584480 - L1PA7 LINE L1 -6 6148 6082 695 142 35 18 chr12 99698538 99698651 -44583838 + AluSg/x SINE Alu 169 283 -27 411 213 106 11 chr12 99699443 99699537 -44582952 + MIR SINE MIR 49 151 -111 194 250 100 0 chr12 99699938 99699998 -44582491 - MIR SINE MIR -55 153 88 334 307 102 82 chr12 99700589 99700931 -44581558 + L1M2 LINE L1 1056 1404 -5445 211 136 23 0 chr12 99702037 99702081 -44580408 + (TTTAA)n Simple_repeat Simple_repeat 1 45 0 768 157 43 0 chr12 99702090 99702230 -44580259 + L1MB7 LINE L1 5989 6134 -50 5258 59 16 16 chr12 99702669 99703627 -44578862 - L1PA7 LINE L1 -249 5905 4959 1847 126 0 40 chr12 99704065 99704366 -44578123 - AluJo SINE Alu -23 289 1 32 26 0 0 chr12 99704379 99704418 -44578071 + AT_rich Low_complexity Low_complexity 1 39 0 464 272 48 5 chr12 99705147 99705353 -44577136 - AluSx SINE Alu -92 220 6 1595 190 14 0 chr12 99705358 99705647 -44576842 - AluJb SINE Alu -19 293 1 427 173 0 27 chr12 99705647 99705722 -44576767 - AluSc SINE Alu -20 289 217 404 288 123 0 chr12 99705729 99705875 -44576614 + MER69 DNA AcHobo 174 337 -2189 955 210 32 32 chr12 99705891 99706110 -44576379 + Tigger5 DNA MER2_type 20 238 -2085 * 1402 143 21 13 chr12 99706100 99706259 -44576230 + Tigger5 DNA MER2_type 2085 2248 -75 1999 163 0 3 chr12 99706259 99706572 -44575917 - AluJo SINE Alu 0 312 1 1402 143 21 13 chr12 99706572 99706649 -44575840 + Tigger5 DNA MER2_type 2248 2323 0 225 189 56 89 chr12 99706649 99706735 -44575754 + MER69 DNA AcHobo 2441 2523 -3 285 29 0 0 chr12 99706957 99706991 -44575498 + (CA)n Simple_repeat Simple_repeat 2 35 0 1536 152 95 4 chr12 99707588 99707852 -44574637 + AluJb SINE Alu 1 288 -24 264 62 0 0 chr12 99707860 99707892 -44574597 + U2 snRNA snRNA 1 32 -156 28 0 0 0 chr12 99707899 99707927 -44574562 + AT_rich Low_complexity Low_complexity 1 28 0 2287 103 3 10 chr12 99708550 99708862 -44573627 - AluSq SINE Alu -2 311 2 490 310 116 60 chr12 99709306 99709641 -44572848 - L2 LINE L2 0 3272 2919 1797 179 54 80 chr12 99709776 99709913 -44572576 + L1ME2 LINE L1 5642 5781 -383 1931 138 7 7 chr12 99709913 99710210 -44572279 + AluSx SINE Alu 1 297 -15 1797 179 54 80 chr12 99710210 99710262 -44572227 + L1ME2 LINE L1 5781 5833 -331 2010 122 21 3 chr12 99710262 99710550 -44571939 + AluSp SINE Alu 1 293 -20 1797 179 54 80 chr12 99710550 99710895 -44571594 + L1ME2 LINE L1 5833 6163 -1 250 363 44 0 chr12 99710909 99711022 -44571467 - L2 LINE L2 -567 2747 2630 2123 129 10 10 chr12 99711388 99711698 -44570791 + AluSx SINE Alu 1 310 -2 273 224 53 13 chr12 99711939 99712015 -44570474 - MIR3 SINE MIR 0 208 130 282 259 83 19 chr12 99712075 99712183 -44570306 - MIR SINE MIR -39 223 109 940 245 50 70 chr12 99712219 99712636 -44569853 + MLT1J2 LTR MaLR 38 446 -4 405 281 0 26 chr12 99712673 99712787 -44569702 - L2 LINE L2 -5 3308 3198 358 299 170 48 chr12 99713724 99714035 -44568454 - MLT1K LTR MaLR -164 424 76 180 0 0 0 chr12 99714075 99714095 -44568394 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 244 246 96 91 chr12 99714759 99714958 -44567531 - MLT1K LTR MaLR -14 574 375 200 203 0 17 chr12 99715330 99715369 -44567120 + (TAA)n Simple_repeat Simple_repeat 1 40 -18 2450 58 0 0 chr12 99715369 99715660 -44566829 + AluY SINE Alu 1 291 -20 200 203 0 17 chr12 99715660 99715679 -44566810 + (TAA)n Simple_repeat Simple_repeat 40 58 0 2093 126 14 0 chr12 99715974 99716267 -44566222 - AluSx SINE Alu -15 297 1 1850 168 3 0 chr12 99716306 99716604 -44565885 - AluJb SINE Alu -11 301 3 3000 93 63 101 chr12 99716605 99717237 -44565252 - LOR1-int LTR ERV1 -6436 1684 1077 548 134 0 0 chr12 99717247 99717329 -44565160 + AluS SINE Alu 226 307 -5 1154 238 82 85 chr12 99717338 99717921 -44564568 - MER45C DNA AcHobo -320 633 1 206 171 0 0 chr12 99717931 99717966 -44564523 - MER5A DNA MER1_type -117 72 38 287 104 21 0 chr12 99717979 99718027 -44564462 + (TTTTC)n Simple_repeat Simple_repeat 1 49 0 2490 99 0 0 chr12 99718057 99718370 -44564119 - AluSq SINE Alu 0 313 1 203 278 38 53 chr12 99718424 99718557 -44563932 + MIR SINE MIR 124 254 -8 590 261 45 0 chr12 99719290 99719447 -44563042 - MER5B DNA MER1_type -14 164 1 818 141 33 0 chr12 99719901 99720022 -44562467 - FLAM_C SINE Alu -16 127 3 21348 114 5 7 chr12 99721109 99723785 -44558704 - L1PA10 LINE L1 -1 6167 3499 2676 48 0 0 chr12 99723785 99724096 -44558393 - AluY SINE Alu 0 311 1 21348 114 5 7 chr12 99724096 99725496 -44556993 - L1PA10 LINE L1 -2669 3499 2098 3275 216 92 55 chr12 99725498 99726785 -44555704 + L1ME1 LINE L1 3703 5255 -911 1904 164 0 0 chr12 99726785 99727071 -44555418 - AluSx SINE Alu -2 310 25 3275 216 92 55 chr12 99727071 99728013 -44554476 + L1ME1 LINE L1 5255 6161 -5 193 304 99 76 chr12 99729199 99729282 -44553207 + L2 LINE L2 2898 2978 -294 1960 121 102 6 chr12 99729282 99729614 -44552875 + THE1B LTR MaLR 1 364 0 193 304 99 76 chr12 99729614 99729793 -44552696 + L2 LINE L2 2978 3166 -106 1817 174 57 17 chr12 99729819 99730128 -44552361 - MLT1A1 LTR MaLR 0 365 70 2074 137 6 10 chr12 99730128 99730441 -44552048 + AluSx SINE Alu 1 312 0 279 54 0 0 chr12 99730441 99730478 -44552011 + (TA)n Simple_repeat Simple_repeat 2 38 0 1817 174 57 17 chr12 99730478 99730518 -44551971 - MLT1A1 LTR MaLR -294 71 1 624 277 18 0 chr12 99730553 99730719 -44551770 - MIR SINE MIR -8 254 86 233 271 17 0 chr12 99730765 99730824 -44551665 + L2 LINE L2 3205 3264 -8 915 134 0 0 chr12 99731022 99731149 -44551340 + FLAM_C SINE Alu 3 129 -14 2364 94 0 0 chr12 99731187 99731485 -44551004 - AluSx SINE Alu -14 298 1 374 248 17 26 chr12 99731592 99731709 -44550780 + MLT1H LTR MaLR 47 162 -387 246 228 79 30 chr12 99731846 99731947 -44550542 + MLT1H LTR MaLR 428 533 -16 671 282 10 10 chr12 99732162 99732371 -44550118 - MIR SINE MIR -45 217 9 1954 131 10 0 chr12 99732402 99732692 -44549797 + AluJb SINE Alu 10 302 -10 232 278 0 0 chr12 99733725 99733779 -44548710 - MLT1K LTR MaLR -286 302 249 272 241 17 86 chr12 99733810 99733851 -44548638 - MLT1K LTR MaLR -471 117 75 1791 212 67 37 chr12 99733851 99734341 -44548148 + MLT1D LTR MaLR 1 505 0 272 241 17 86 chr12 99734341 99734415 -44548074 - MLT1K LTR MaLR -513 75 10 597 321 86 5 chr12 99734590 99734811 -44547678 + MIR SINE MIR 17 255 -7 1007 181 20 5 chr12 99734842 99735041 -44547448 + MIR SINE MIR 31 232 -30 2063 160 0 0 chr12 99736168 99736474 -44546015 - AluSx SINE Alu -6 306 1 1953 156 3 0 chr12 99736553 99736848 -44545641 - AluJo SINE Alu -16 296 1 397 283 83 0 chr12 99736849 99736994 -44545495 - LTR16A1 LTR ERVL -49 408 252 1867 238 105 43 chr12 99737008 99737634 -44544855 + MER21B LTR ERV1 13 677 -186 228 222 22 0 chr12 99737635 99737680 -44544809 - LTR16A1 LTR ERVL -411 46 1 2132 186 67 7 chr12 99737686 99738121 -44544368 - LOR1b LTR ERV1 0 461 1 3993 131 113 40 chr12 99738124 99738392 -44544097 - LOR1b-int LTR ERV1 -2 8118 7871 2071 148 0 7 chr12 99738392 99738689 -44543800 + AluSx SINE Alu 1 295 -17 3993 131 113 40 chr12 99738689 99739125 -44543364 - LOR1b-int LTR ERV1 -249 7871 7362 4507 161 4 52 chr12 99739140 99739875 -44542614 - LOR1-int LTR ERV1 -2828 3930 3238 1724 172 7 16 chr12 99739875 99740178 -44542311 - AluJo SINE Alu -2 310 11 4507 161 4 52 chr12 99740178 99740263 -44542226 - LOR1-int LTR ERV1 -3520 3238 3150 7230 126 45 68 chr12 99740273 99740671 -44541818 - LOR1-int LTR ERV1 -2921 5199 4793 234 138 17 52 chr12 99740671 99740729 -44541760 + L1PA2 LINE L1 6084 6139 -16 * 246 35 0 0 chr12 99740700 99740758 -44541731 + L1PA6 LINE L1 6110 6167 0 * 7230 126 45 68 chr12 99740729 99741687 -44540802 - LOR1-int LTR ERV1 -3327 4793 3846 726 12 0 0 chr12 99741703 99741786 -44540703 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 1774 176 4 0 chr12 99741788 99742066 -44540423 - AluJo SINE Alu -31 281 3 359 212 0 15 chr12 99742167 99742224 -44540265 + AluJ/FRAM SINE Alu 227 284 -18 693 24 0 0 chr12 99742224 99742307 -44540182 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 7230 126 45 68 chr12 99742323 99743252 -44539237 + LOR1b-int LTR ERV1 3846 4795 -3325 221 0 35 0 chr12 99743252 99743281 -44539208 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 234 138 17 52 chr12 99743281 99743339 -44539150 - L1PA2 LINE L1 -16 6139 6084 7230 126 45 68 chr12 99743339 99743737 -44538752 + LOR1b-int LTR ERV1 4793 5199 -2921 4506 162 2 52 chr12 99743747 99743832 -44538657 + LOR1b-int LTR ERV1 3150 3238 -3520 1724 172 7 16 chr12 99743832 99744135 -44538354 + AluJo SINE Alu 11 310 -2 4506 162 2 52 chr12 99744135 99744871 -44537618 + LOR1b-int LTR ERV1 3238 3930 -2828 3993 131 113 40 chr12 99744886 99745322 -44537167 + LOR1b-int LTR ERV1 7362 7871 -249 2071 148 0 7 chr12 99745322 99745619 -44536870 - AluSx SINE Alu -17 295 1 3993 131 113 40 chr12 99745619 99745887 -44536602 + LOR1b-int LTR ERV1 7871 8118 -2 2132 186 67 7 chr12 99745890 99746325 -44536164 + LOR1b LTR ERV1 1 461 0 228 222 22 0 chr12 99746331 99746376 -44536113 + LTR16A1 LTR ERVL 1 46 -411 1867 238 105 43 chr12 99746377 99747003 -44535486 - MER21B LTR ERV1 -186 677 13 397 283 83 0 chr12 99747017 99747162 -44535327 + LTR16A1 LTR ERVL 252 408 -49 1953 156 3 0 chr12 99747163 99747458 -44535031 + AluJo SINE Alu 1 296 -16 2079 160 0 0 chr12 99747537 99747843 -44534646 + AluSx SINE Alu 1 306 -6 1007 181 20 5 chr12 99748971 99749170 -44533319 - MIR SINE MIR -30 232 31 597 321 86 5 chr12 99749201 99749422 -44533067 - MIR SINE MIR -7 255 17 272 241 17 86 chr12 99749597 99749671 -44532818 + MLT1K LTR MaLR 10 75 -513 1791 212 67 37 chr12 99749671 99750161 -44532328 - MLT1D LTR MaLR 0 505 1 272 241 17 86 chr12 99750161 99750202 -44532287 + MLT1K LTR MaLR 75 117 -471 232 278 0 0 chr12 99750233 99750287 -44532202 + MLT1K LTR MaLR 249 302 -286 1986 134 7 0 chr12 99751319 99751610 -44530879 - AluJb SINE Alu -10 302 10 671 282 10 10 chr12 99751641 99751850 -44530639 + MIR SINE MIR 9 217 -45 246 228 79 30 chr12 99752065 99752166 -44530323 - MLT1H LTR MaLR -16 533 428 374 248 17 26 chr12 99752303 99752420 -44530069 - MLT1H LTR MaLR -387 162 47 1853 129 57 18 chr12 99752527 99752651 -44529838 + AluSx SINE Alu 1 119 -193 201 39 0 0 chr12 99752651 99752677 -44529812 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1853 129 57 18 chr12 99752677 99752832 -44529657 + AluSx SINE Alu 119 291 -21 825 234 29 0 chr12 99752938 99753109 -44529380 + MER45A DNA AcHobo 3 178 0 293 211 300 0 chr12 99753221 99753311 -44529178 - L2 LINE L2 -1 3312 3196 820 178 101 0 chr12 99754086 99754255 -44528234 - MER5A DNA MER1_type -3 186 1 191 386 16 0 chr12 99754360 99754487 -44528002 + L2 LINE L2 1802 1930 -1384 1683 147 147 45 chr12 99754510 99754679 -44527810 + MSTA LTR MaLR 1 151 -277 2093 98 32 0 chr12 99754679 99754991 -44527498 + AluSx SINE Alu 1 312 0 1683 147 147 45 chr12 99754991 99755174 -44527315 + MSTA LTR MaLR 151 389 -39 1783 157 4 0 chr12 99755174 99755455 -44527034 + AluSx SINE Alu 1 282 -30 403 211 42 63 chr12 99755837 99755979 -44526510 - MER104 DNA Tc2 -4 176 38 234 295 23 101 chr12 99756024 99756153 -44526336 + MLT1K LTR MaLR 277 395 -193 266 237 17 0 chr12 99756231 99756290 -44526199 + MLT1K LTR MaLR 529 588 0 332 307 100 18 chr12 99756358 99756638 -44525851 + L2 LINE L2 2456 2758 -556 1222 156 15 5 chr12 99756711 99756916 -44525573 - AluJb SINE Alu -19 293 87 1949 137 97 51 chr12 99757331 99757598 -44524891 - MLT1B LTR MaLR 0 390 100 2197 132 33 30 chr12 99757598 99757961 -44524528 + THE1B LTR MaLR 1 364 0 1949 137 97 51 chr12 99757961 99758066 -44524423 - MLT1B LTR MaLR -290 100 1 1144 246 26 26 chr12 99758268 99758325 -44524164 + MLT1C LTR MaLR 122 178 -289 1906 164 10 6 chr12 99758325 99758636 -44523853 + AluJo SINE Alu 1 312 0 1144 246 26 26 chr12 99758636 99758923 -44523566 + MLT1C LTR MaLR 177 466 -1 2102 164 3 0 chr12 99759086 99759422 -44523067 + MER1B DNA MER1_type 1 337 0 279 292 14 0 chr12 99760032 99760104 -44522385 + GA-rich Low_complexity Low_complexity 5 77 0 325 125 0 0 chr12 99760156 99760204 -44522285 - MLT2D LTR ERVL 0 397 350 180 176 0 0 chr12 99760204 99760238 -44522251 + (TG)n Simple_repeat Simple_repeat 2 35 0 1121 101 0 7 chr12 99760765 99760914 -44521575 - MER1B DNA MER1_type 0 339 192 1040 87 12 64 chr12 99760907 99760967 -44521522 - MLT2D LTR ERVL -249 165 103 * 1722 181 0 30 chr12 99760967 99761271 -44521218 - AluJb SINE Alu -17 295 1 1040 87 12 64 chr12 99761271 99761382 -44521107 - MLT2D LTR ERVL -311 103 3 1964 137 26 7 chr12 99761603 99761783 -44520706 - AluSx SINE Alu 0 312 122 261 0 0 0 chr12 99761783 99761812 -44520677 + (TG)n Simple_repeat Simple_repeat 2 30 0 1964 137 26 7 chr12 99761812 99761937 -44520552 - AluSx SINE Alu -190 122 1 557 118 0 0 chr12 99761945 99762021 -44520468 - AluS SINE Alu -233 79 4 407 281 125 0 chr12 99762043 99762203 -44520286 + MER69 DNA AcHobo 174 353 -873 1174 181 23 32 chr12 99762206 99762427 -44520062 + Tigger5 DNA MER2_type 20 238 -2085 * 1394 143 21 13 chr12 99762417 99762576 -44519913 + Tigger5 DNA MER2_type 2085 2248 -75 2009 163 0 3 chr12 99762576 99762889 -44519600 - AluJo SINE Alu 0 312 1 1394 143 21 13 chr12 99762889 99762966 -44519523 + Tigger5 DNA MER2_type 2248 2323 0 285 29 0 0 chr12 99763274 99763308 -44519181 + (CA)n Simple_repeat Simple_repeat 2 35 0 1556 152 95 4 chr12 99763905 99764169 -44518320 + AluJb SINE Alu 1 288 -24 265 62 0 0 chr12 99764177 99764209 -44518280 + U2 snRNA snRNA 1 32 -156 28 0 0 0 chr12 99764216 99764244 -44518245 + AT_rich Low_complexity Low_complexity 1 28 0 2303 103 3 10 chr12 99764867 99765179 -44517310 - AluSq SINE Alu -2 311 2 504 313 116 60 chr12 99765623 99765958 -44516531 - L2 LINE L2 0 3272 2919 1562 181 54 80 chr12 99766093 99766230 -44516259 + L1ME2 LINE L1 5642 5781 -383 1942 138 7 7 chr12 99766230 99766527 -44515962 + AluSx SINE Alu 1 297 -15 1562 181 54 80 chr12 99766527 99766579 -44515910 + L1ME2 LINE L1 5781 5833 -331 2020 122 21 3 chr12 99766579 99766867 -44515622 + AluSp SINE Alu 1 293 -20 1562 181 54 80 chr12 99766867 99767212 -44515277 + L1ME2 LINE L1 5833 6163 -1 254 363 44 0 chr12 99767226 99767339 -44515150 - L2 LINE L2 -567 2747 2630 2143 129 10 10 chr12 99767705 99768015 -44514474 + AluSx SINE Alu 1 310 -2 275 224 53 13 chr12 99768255 99768331 -44514158 - MIR3 SINE MIR 0 208 130 289 259 83 19 chr12 99768391 99768499 -44513990 - MIR SINE MIR -39 223 109 788 245 50 70 chr12 99768535 99768952 -44513537 + MLT1J2 LTR MaLR 38 446 -4 410 281 0 26 chr12 99768989 99769103 -44513386 - L2 LINE L2 -5 3308 3198 266 344 138 16 chr12 99770040 99770351 -44512138 - MLT1K LTR MaLR -164 424 76 180 0 0 0 chr12 99770391 99770411 -44512078 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 200 203 0 17 chr12 99771646 99771685 -44510804 + (TAA)n Simple_repeat Simple_repeat 1 40 -18 2387 58 0 0 chr12 99771685 99771976 -44510513 + AluY SINE Alu 1 291 -20 200 203 0 17 chr12 99771976 99771995 -44510494 + (TAA)n Simple_repeat Simple_repeat 40 58 0 2078 126 14 0 chr12 99772290 99772583 -44509906 - AluSx SINE Alu -15 297 1 1817 159 17 0 chr12 99772622 99772917 -44509572 - AluJb SINE Alu -11 301 2 943 126 97 11 chr12 99773029 99773204 -44509285 + L1MC4 LINE L1 6773 6962 -1080 440 252 81 154 chr12 99773206 99773486 -44509003 + L2 LINE L2 1940 2158 -1156 2013 140 7 0 chr12 99773486 99773778 -44508711 + AluJb SINE Alu 1 294 -18 440 252 81 154 chr12 99773778 99774068 -44508421 + L2 LINE L2 2158 2468 -846 2353 217 58 0 chr12 99774069 99774604 -44507885 - MER90 LTR ERV1 -2 573 8 2095 138 0 0 chr12 99774656 99774954 -44507535 + AluSx SINE Alu 3 300 -12 210 328 65 54 chr12 99774961 99775147 -44507342 + L2 LINE L2 2507 2694 -620 575 286 198 82 chr12 99775374 99775752 -44506737 + L3 LINE CR1 933 1381 -196 1849 124 95 0 chr12 99775752 99776035 -44506454 + AluSx SINE Alu 1 310 -2 575 286 198 82 chr12 99776035 99776142 -44506347 + L3 LINE CR1 1381 1474 -103 2268 97 0 0 chr12 99776174 99776462 -44506027 + AluSg SINE Alu 1 288 -22 218 224 259 0 chr12 99776474 99776559 -44505930 - MER5C DNA MER1_type -12 312 206 1688 181 30 13 chr12 99776836 99777139 -44505350 + AluJo SINE Alu 1 308 -4 2302 113 0 0 chr12 99777844 99778153 -44504336 - AluSq SINE Alu -4 309 1 4809 156 51 18 chr12 99779472 99780536 -44501953 + L1MC1 LINE L1 5221 6321 -12 1851 150 57 7 chr12 99780536 99780836 -44501653 - 7SLRNA srpRNA srpRNA -5 315 1 936 223 62 8 chr12 99780863 99781119 -44501370 + L1ME4a LINE L1 5317 5586 -578 2323 114 0 0 chr12 99781119 99781417 -44501072 - AluSx SINE Alu -14 298 1 914 219 139 76 chr12 99781746 99781877 -44500612 + MLT1H LTR MaLR 73 194 -355 1686 127 3 103 chr12 99781877 99782078 -44500411 - AluJo SINE Alu -15 297 140 2128 108 7 7 chr12 99782078 99782366 -44500123 + AluSp SINE Alu 1 288 -25 1686 127 3 103 chr12 99782366 99782494 -44499995 - AluJo SINE Alu -172 140 1 914 219 139 76 chr12 99782494 99782809 -44499680 + MLT1H LTR MaLR 194 547 -2 293 212 220 34 chr12 99783302 99783420 -44499069 + MIR3 SINE MIR 65 204 -4 2206 118 7 3 chr12 99783759 99784063 -44498426 + AluSp SINE Alu 1 305 -8 2105 123 0 41 chr12 99784096 99784412 -44498077 + AluSq SINE Alu 1 303 -10 314 246 47 70 chr12 99785391 99785562 -44496927 - L2 LINE L2 -37 3276 3110 1882 132 17 17 chr12 99785880 99786167 -44496322 + AluSx SINE Alu 1 287 -25 203 120 0 60 chr12 99786307 99786357 -44496132 + (A)n Simple_repeat Simple_repeat 1 47 0 332 233 178 10 chr12 99786369 99786571 -44495918 + L1ME4a LINE L1 5689 5924 -197 1861 159 3 13 chr12 99786640 99786941 -44495548 + AluJb SINE Alu 1 298 -14 211 240 93 0 chr12 99788331 99788406 -44494083 + MIR SINE MIR 133 214 -48 941 163 198 0 chr12 99788633 99788835 -44493654 - Tigger5 DNA MER2_type -1 2322 2081 907 186 18 0 chr12 99789342 99789509 -44492980 - FAM SINE Alu -5 170 1 359 327 73 29 chr12 99789815 99790090 -44492399 + L1ME4a LINE L1 5383 5669 -452 300 267 104 67 chr12 99790097 99790337 -44492152 + L1ME4a LINE L1 5865 6113 -8 210 37 0 0 chr12 99791513 99791540 -44490949 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 1001 212 0 0 chr12 99791556 99791735 -44490754 - FRAM SINE Alu -5 171 1 2120 147 0 0 chr12 99791747 99792053 -44490436 + AluJb SINE Alu 1 306 -6 365 258 137 16 chr12 99792074 99792198 -44490291 - L2 LINE L2 0 3313 3175 763 273 94 1 chr12 99792207 99792518 -44489971 - L2 LINE L2 -250 3063 2717 3484 199 16 25 chr12 99792525 99793399 -44489090 - L1MEc LINE L1 -1938 4277 3412 571 165 0 0 chr12 99793402 99793493 -44488996 + AluSp/q SINE Alu 193 283 -30 289 185 0 0 chr12 99793520 99793585 -44488904 - L1MEc LINE L1 -2794 3421 3357 347 173 27 0 chr12 99793587 99793662 -44488827 - L1MEc LINE L1 -4009 2387 2311 2032 142 3 3 chr12 99793966 99794269 -44488220 + AluSx SINE Alu 3 305 -7 985 156 6 67 chr12 99794805 99794985 -44487504 + AluJo SINE Alu 18 186 -126 1221 161 137 24 chr12 99795081 99795373 -44487116 - MER61A LTR ERV1 0 343 19 3232 272 55 2 chr12 99795481 99796418 -44486071 + L2 LINE L2 2071 3063 -250 365 258 137 16 chr12 99796427 99796551 -44485938 + L2 LINE L2 3175 3313 0 348 143 0 0 chr12 99796682 99796738 -44485751 + Alu SINE Alu 247 302 0 365 258 137 16 chr12 99796764 99796888 -44485601 - L2 LINE L2 0 3313 3175 3232 272 55 2 chr12 99796897 99797832 -44484657 - L2 LINE L2 -250 3063 2071 1221 161 137 24 chr12 99797940 99798232 -44484257 + MER61A LTR ERV1 19 343 0 950 155 6 72 chr12 99798328 99798509 -44483980 - AluJo SINE Alu -126 186 18 2089 146 0 0 chr12 99799046 99799348 -44483141 - AluSx SINE Alu -8 304 3 347 173 27 0 chr12 99799652 99799727 -44482762 + L1MEc LINE L1 2311 2387 -4009 289 185 0 0 chr12 99799729 99799794 -44482695 + L1MEc LINE L1 3357 3421 -2794 571 165 0 0 chr12 99799821 99799912 -44482577 - AluSp/q SINE Alu -30 283 193 3484 199 16 25 chr12 99799915 99800789 -44481700 + L1MEc LINE L1 3412 4277 -1938 763 273 94 1 chr12 99800796 99801107 -44481382 + L2 LINE L2 2717 3063 -250 365 258 137 16 chr12 99801116 99801240 -44481249 + L2 LINE L2 3175 3313 0 2129 147 0 0 chr12 99801261 99801568 -44480921 - AluJb SINE Alu -5 307 1 1001 212 0 0 chr12 99801580 99801759 -44480730 + FRAM SINE Alu 1 171 -5 210 37 0 0 chr12 99801775 99801802 -44480687 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 5127 126 33 8 chr12 99802497 99803380 -44479109 + L1PA16 LINE L1 5261 6165 -1 315 177 92 92 chr12 99803425 99803443 -44479046 + L1M4 LINE L1 5177 5194 -952 186 43 0 0 chr12 99803443 99803466 -44479023 + (CATA)n Simple_repeat Simple_repeat 2 24 0 315 177 92 92 chr12 99803466 99803673 -44478816 + L1M4 LINE L1 5193 5402 -744 2264 119 0 0 chr12 99803821 99804133 -44478356 + AluSx SINE Alu 1 312 0 207 69 0 0 chr12 99804321 99804350 -44478139 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 2217 121 0 6 chr12 99805176 99805490 -44476999 + AluSx SINE Alu 1 312 0 208 274 41 14 chr12 99805735 99805808 -44476681 + L2 LINE L2 2942 3016 -256 805 163 0 15 chr12 99806022 99806157 -44476332 + FLAM_A SINE Alu 1 133 0 1545 176 42 21 chr12 99806624 99806742 -44475747 + AluJb SINE Alu 9 123 -189 2283 98 0 7 chr12 99806742 99807048 -44475441 + AluY SINE Alu 1 304 -7 1545 176 42 21 chr12 99807048 99807213 -44475276 + AluJb SINE Alu 123 298 -14 1655 165 50 40 chr12 99807745 99808048 -44474441 + AluJb SINE Alu 1 306 -6 912 118 0 29 chr12 99808048 99808184 -44474305 + FLAM_C SINE Alu 1 132 -1 2159 105 31 0 chr12 99808374 99808668 -44473821 + AluSx SINE Alu 1 303 -9 1553 151 13 76 chr12 99808893 99809210 -44473279 + AluJo SINE Alu 12 308 -4 1555 161 86 11 chr12 99809569 99809848 -44472641 + AluJb SINE Alu 1 300 -12 2078 126 14 0 chr12 99809888 99810181 -44472308 + AluSx SINE Alu 1 297 -15 2387 58 0 0 chr12 99810476 99810786 -44471703 - AluY SINE Alu 0 310 1 180 0 0 0 chr12 99812060 99812080 -44470409 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 266 344 138 16 chr12 99812120 99812431 -44470058 + MLT1K LTR MaLR 76 424 -164 410 281 0 26 chr12 99813368 99813482 -44469007 + L2 LINE L2 3198 3308 -5 788 245 50 70 chr12 99813519 99813936 -44468553 - MLT1J2 LTR MaLR -4 446 38 289 259 83 19 chr12 99813972 99814080 -44468409 + MIR SINE MIR 109 223 -39 275 224 53 13 chr12 99814140 99814216 -44468273 + MIR3 SINE MIR 130 208 0 2143 129 10 10 chr12 99814456 99814766 -44467723 - AluSx SINE Alu -2 310 1 254 363 44 0 chr12 99815132 99815245 -44467244 + L2 LINE L2 2630 2747 -567 1562 181 54 80 chr12 99815259 99815604 -44466885 - L1ME2 LINE L1 -1 6163 5811 2020 122 21 3 chr12 99815604 99815892 -44466597 - AluSp SINE Alu -20 293 1 1562 181 54 80 chr12 99815892 99815944 -44466545 - L1ME2 LINE L1 -353 5811 5759 1942 138 7 7 chr12 99815944 99816241 -44466248 - AluSx SINE Alu -15 297 1 1562 181 54 80 chr12 99816241 99816378 -44466111 - L1ME2 LINE L1 -405 5759 5642 504 313 116 60 chr12 99816513 99816848 -44465641 + L2 LINE L2 2919 3272 0 2303 103 3 10 chr12 99817292 99817604 -44464885 + AluSq SINE Alu 2 311 -2 28 0 0 0 chr12 99818227 99818255 -44464234 + AT_rich Low_complexity Low_complexity 1 28 0 265 62 0 0 chr12 99818262 99818294 -44464195 - U2 snRNA snRNA -156 32 1 1556 152 95 4 chr12 99818302 99818566 -44463923 - AluJb SINE Alu -24 288 1 285 29 0 0 chr12 99819163 99819197 -44463292 + (TG)n Simple_repeat Simple_repeat 2 35 0 236 285 5 48 chr12 99819426 99819612 -44462877 + AluJb SINE Alu 125 302 0 449 202 0 46 chr12 99819633 99819742 -44462747 + FLAM_C SINE Alu 14 117 -26 441 0 0 0 chr12 99819745 99819794 -44462695 + (TA)n Simple_repeat Simple_repeat 1 49 0 1972 147 0 3 chr12 99819876 99820162 -44462327 + AluSx SINE Alu 1 285 -27 1350 153 28 56 chr12 99820162 99820411 -44462078 + Tigger3b DNA MER2_type 16 257 -974 517 140 170 20 chr12 99820420 99820520 -44461969 + FLAM_C SINE Alu 10 124 -19 6077 113 48 11 chr12 99820524 99821493 -44460996 + Tigger3b DNA MER2_type 227 1231 0 2101 123 0 13 chr12 99821578 99821880 -44460609 + AluSx SINE Alu 1 298 -14 1287 197 0 0 chr12 99821888 99822096 -44460393 + AluJo SINE Alu 1 208 -104 871 291 95 33 chr12 99822263 99822686 -44459803 - L2 LINE L2 -1 3312 2864 1909 277 95 49 chr12 99822781 99823686 -44458803 - L2 LINE L2 -2217 1097 151 2405 86 0 3 chr12 99823935 99824236 -44458253 + AluSc SINE Alu 2 301 -8 2262 90 3 0 chr12 99824353 99824643 -44457846 + AluSx SINE Alu 1 291 -21 22 0 0 0 chr12 99824732 99824754 -44457735 + AT_rich Low_complexity Low_complexity 1 22 0 413 88 0 0 chr12 99825445 99825502 -44456987 - Alu SINE Alu -15 294 238 1922 136 33 0 chr12 99825551 99825863 -44456626 + AluSx SINE Alu 1 321 0 1946 141 14 10 chr12 99826227 99826518 -44455971 + AluJb SINE Alu 1 292 -20 1862 178 3 0 chr12 99826518 99826811 -44455678 + AluJb SINE Alu 1 294 -18 2108 131 0 0 chr12 99826811 99827094 -44455395 + AluSx SINE Alu 1 283 -29 495 163 0 0 chr12 99827094 99827180 -44455309 + AluSg/x SINE Alu 218 303 -9 26 30 0 0 chr12 99827198 99827231 -44455258 + AT_rich Low_complexity Low_complexity 1 33 0 26 50 0 0 chr12 99827606 99827646 -44454843 + AT_rich Low_complexity Low_complexity 1 40 0 469 293 75 81 chr12 99827892 99828250 -44454239 - L2 LINE L2 -1 3271 2916 2016 99 78 3 chr12 99828305 99828588 -44453901 + AluSq SINE Alu 1 304 -9 2384 68 13 3 chr12 99828763 99829071 -44453418 - AluY SINE Alu 0 311 1 2288 117 0 0 chr12 99829359 99829667 -44452822 + AluSq SINE Alu 2 309 -4 1670 181 30 13 chr12 99830372 99830675 -44451814 - AluJo SINE Alu -4 308 1 480 283 47 33 chr12 99831304 99831516 -44450973 - MIR SINE MIR -14 248 34 2097 148 0 0 chr12 99831675 99831980 -44450509 + AluSx SINE Alu 1 305 -7 533 211 33 51 chr12 99832109 99832278 -44450211 - L1MD2 LINE L1 -2 7993 6195 189 0 0 0 chr12 99832965 99832986 -44449503 + (A)n Simple_repeat Simple_repeat 1 21 0 207 243 0 75 chr12 99833621 99833728 -44448761 + G-rich Low_complexity Low_complexity 3 101 0 7027 59 17 3 chr12 99833767 99835276 -44447213 + L1PA10 LINE L1 4642 6168 0 428 279 35 50 chr12 99835283 99835484 -44447005 - L1M4 LINE L1 -2430 3716 3519 208 139 28 0 chr12 99835527 99835563 -44446926 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 22 0 0 0 chr12 99836069 99836091 -44446398 + AT_rich Low_complexity Low_complexity 1 22 0 222 333 0 12 chr12 99837075 99837156 -44445333 - MIR3 SINE MIR -30 178 99 199 347 171 6 chr12 99837235 99837405 -44445084 + L2 LINE L2 3075 3272 0 843 218 192 29 chr12 99837642 99838023 -44444466 - L2 LINE L2 0 3313 2871 1735 186 16 0 chr12 99838124 99838430 -44444059 + AluJo SINE Alu 1 311 -1 1086 255 71 47 chr12 99838702 99839174 -44443315 - Charlie8 DNA MER1_type -2135 282 1 515 265 97 22 chr12 99839613 99839798 -44442691 - MLT1K LTR MaLR -39 549 351 571 261 187 15 chr12 99840654 99840857 -44441632 - MIR SINE MIR 0 262 25 330 87 0 0 chr12 99840866 99840912 -44441577 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 971 300 70 14 chr12 99840919 99841362 -44441127 - L2 LINE L2 -22 3291 2824 2097 79 8 0 chr12 99841366 99841619 -44440870 - AluSq SINE Alu -58 255 1 201 287 11 58 chr12 99841651 99841738 -44440751 - L3 LINE CR1 -103 1474 1392 1850 124 95 0 chr12 99841758 99842041 -44440448 - AluSx SINE Alu -2 310 1 446 320 262 5 chr12 99842041 99842419 -44440070 - L3 LINE CR1 -170 1407 933 210 290 16 73 chr12 99842646 99842770 -44439719 - L2 LINE L2 -620 2694 2578 2100 138 0 0 chr12 99842839 99843137 -44439352 - AluSx SINE Alu -12 300 3 2570 217 58 0 chr12 99843189 99843724 -44438765 + MER90 LTR ERV1 8 573 -2 451 254 110 48 chr12 99843725 99843934 -44438555 - L2 LINE L2 -846 2468 2247 200 328 81 51 chr12 99844000 99844015 -44438474 - L2 LINE L2 -1070 2244 2231 1923 148 10 0 chr12 99844015 99844306 -44438183 - AluJb SINE Alu -18 294 1 200 328 81 51 chr12 99844306 99844586 -44437903 - L2 LINE L2 -1083 2231 1940 1026 126 97 11 chr12 99844588 99844763 -44437726 - L1MC4 LINE L1 -1080 6962 6773 290 147 29 44 chr12 99844856 99844924 -44437565 + AluSp SINE Alu 120 186 -117 17382 134 16 3 chr12 99845043 99845980 -44436509 + L1PA10 LINE L1 2563 3487 -2681 2676 48 0 0 chr12 99845980 99846291 -44436198 + AluY SINE Alu 1 311 0 17382 134 16 3 chr12 99846291 99848965 -44433524 + L1PA10 LINE L1 3487 6168 0 428 279 35 50 chr12 99848972 99849173 -44433316 - L1M4 LINE L1 -2430 3716 3519 208 139 28 0 chr12 99849216 99849252 -44433237 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 22 0 0 0 chr12 99849758 99849780 -44432709 + AT_rich Low_complexity Low_complexity 1 22 0 222 333 0 12 chr12 99850764 99850845 -44431644 - MIR3 SINE MIR -30 178 99 199 347 171 6 chr12 99850924 99851094 -44431395 + L2 LINE L2 3075 3272 0 843 218 192 29 chr12 99851331 99851712 -44430777 - L2 LINE L2 0 3313 2871 1735 186 16 0 chr12 99851813 99852119 -44430370 + AluJo SINE Alu 1 311 -1 1086 255 71 47 chr12 99852391 99852863 -44429626 - Charlie8 DNA MER1_type -2135 282 1 515 265 97 22 chr12 99853302 99853487 -44429002 - MLT1K LTR MaLR -39 549 351 571 261 187 15 chr12 99854343 99854546 -44427943 - MIR SINE MIR 0 262 25 330 87 0 0 chr12 99854555 99854601 -44427888 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 971 300 70 14 chr12 99854608 99855051 -44427438 - L2 LINE L2 -22 3291 2824 2202 66 0 0 chr12 99855052 99855310 -44427179 - AluSx SINE Alu -54 258 1 2031 100 4 0 chr12 99855477 99855756 -44426733 + AluSx SINE Alu 1 280 -32 221 371 31 0 chr12 99856006 99856103 -44426386 - MIR SINE MIR -60 148 49 239 122 20 0 chr12 99858110 99858159 -44424330 + CT-rich Low_complexity Low_complexity 1 50 0 219 273 0 0 chr12 99858393 99858448 -44424041 + C-rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr12 99858478 99858501 -44423988 + GC_rich Low_complexity Low_complexity 1 23 0 231 36 0 0 chr12 99860796 99860824 -44421665 + (T)n Simple_repeat Simple_repeat 1 28 0 229 260 83 0 chr12 99863961 99864057 -44418432 - MIR SINE MIR -13 249 146 216 345 52 20 chr12 99865178 99865277 -44417212 - MIR SINE MIR -11 197 84 288 53 0 0 chr12 99865277 99865315 -44417174 + (CA)n Simple_repeat Simple_repeat 1 38 0 216 345 52 20 chr12 99865315 99865369 -44417120 - MIR SINE MIR -124 84 33 2278 108 10 0 chr12 99866934 99867240 -44415249 + AluSx SINE Alu 1 309 -3 429 194 148 0 chr12 99867777 99867885 -44414604 - MER63 DNA MER1_type -312 750 1 238 313 18 6 chr12 99868218 99868321 -44414168 + CT-rich Low_complexity Low_complexity 1 104 0 330 249 237 17 chr12 99868419 99868596 -44413893 - MIR SINE MIR -7 255 40 276 299 67 63 chr12 99868809 99869063 -44413426 - L2 LINE L2 -433 2881 2627 246 264 236 42 chr12 99869269 99869413 -44413076 + MIR3 SINE MIR 9 180 -28 425 345 97 15 chr12 99870363 99870513 -44411976 - MIR SINE MIR -20 242 69 2679 169 29 41 chr12 99870513 99871029 -44411460 - LTR54 LTR ERV1 0 510 1 425 345 97 15 chr12 99871029 99871084 -44411405 - MIR SINE MIR -193 69 20 2355 111 0 0 chr12 99871351 99871657 -44410832 - AluSq SINE Alu -7 306 1 838 229 120 55 chr12 99871766 99872150 -44410339 - MLT1I LTR MaLR 0 409 1 1286 174 64 115 chr12 99872366 99872723 -44409766 + MER2 DNA MER2_type 4 342 -2 209 179 0 0 chr12 99873353 99873392 -44409097 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 482 349 52 69 chr12 99873392 99873480 -44409009 - L2 LINE L2 0 3272 3184 2172 122 7 0 chr12 99873480 99873783 -44408706 + AluSx SINE Alu 1 305 -7 482 349 52 69 chr12 99873783 99873994 -44408495 - L2 LINE L2 -88 3184 2971 2432 77 0 0 chr12 99873994 99874294 -44408195 + AluY SINE Alu 1 300 -11 482 349 52 69 chr12 99874294 99874566 -44407923 - L2 LINE L2 -301 2971 2709 1687 204 69 5 chr12 99874647 99875053 -44407436 + Charlie4a DNA MER1_type 22 453 -55 2159 111 0 23 chr12 99875210 99875516 -44406973 - AluSx SINE Alu -13 299 1 186 71 0 0 chr12 99876141 99876169 -44406320 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2077 101 61 0 chr12 99876566 99876844 -44405645 + AluSg SINE Alu 1 295 -15 2291 61 41 3 chr12 99877113 99877408 -44405081 + AluSg SINE Alu 5 310 0 210 154 0 0 chr12 99877836 99877875 -44404614 + A-rich Low_complexity Low_complexity 1 39 0 1002 266 17 27 chr12 99878888 99879189 -44403300 - L1MC4a LINE L1 -1958 5850 5553 189 0 0 0 chr12 99879512 99879533 -44402956 + (T)n Simple_repeat Simple_repeat 1 21 0 25 65 0 0 chr12 99880042 99880088 -44402401 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 99880417 99880439 -44402050 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr12 99881852 99881888 -44400601 + AT_rich Low_complexity Low_complexity 1 36 0 186 103 0 0 chr12 99882422 99882451 -44400038 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 38 22 0 0 chr12 99882468 99882513 -44399976 + AT_rich Low_complexity Low_complexity 1 45 0 591 274 47 33 chr12 99882766 99882981 -44399508 - MIR SINE MIR -11 251 34 2078 148 0 0 chr12 99883140 99883445 -44399044 + AluSx SINE Alu 1 305 -7 180 111 0 0 chr12 99883514 99883541 -44398948 + MIR SINE MIR 116 142 -66 980 207 247 30 chr12 99883574 99883925 -44398564 - L1MD3 LINE L1 -2 7993 5934 1798 137 50 7 chr12 99883930 99884207 -44398282 - AluSx SINE Alu -20 292 4 297 264 173 27 chr12 99884543 99884653 -44397836 - L2 LINE L2 -10 3303 3178 399 304 16 71 chr12 99884793 99885046 -44397443 - L2 LINE L2 -357 2957 2719 718 295 71 46 chr12 99885206 99885760 -44396729 - L1ME3A LINE L1 -295 5875 5303 1671 150 68 31 chr12 99885760 99886054 -44396435 - AluJo SINE Alu -5 307 3 718 295 71 46 chr12 99886054 99886102 -44396387 - L1ME3A LINE L1 -867 5303 5258 1982 193 63 19 chr12 99886170 99886549 -44395940 + MSTD LTR MaLR 1 396 0 897 289 59 32 chr12 99886783 99887344 -44395145 - L1ME3A LINE L1 -1198 4948 4373 1690 203 0 6 chr12 99887374 99887685 -44394804 - AluJb SINE Alu -3 309 1 319 255 26 46 chr12 99887707 99887860 -44394629 - L1ME3A LINE L1 -1768 4378 4229 1419 137 22 109 chr12 99887881 99888203 -44394286 - AluYb8 SINE Alu -24 294 1 1500 179 23 33 chr12 99888689 99888990 -44393499 - AluJo SINE Alu -14 298 1 452 336 83 22 chr12 99889841 99890070 -44392419 - MIR SINE MIR -7 255 13 190 0 67 0 chr12 99890782 99890812 -44391677 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1761 155 6 19 chr12 99891239 99891555 -44390934 - AluJb SINE Alu 0 312 1 873 228 38 22 chr12 99892499 99892917 -44389572 - MLT1J LTR MaLR -2 478 1 2031 150 0 0 chr12 99893254 99893547 -44388942 - AluSx SINE Alu -19 293 1 505 150 126 132 chr12 99894168 99894335 -44388154 + MER96B DNA MER1_type? 9 174 -243 1440 181 43 40 chr12 99894595 99894894 -44387595 - AluJo SINE Alu -11 301 2 225 222 19 0 chr12 99894974 99895028 -44387461 + MER96B DNA MER1_type? 192 246 -171 324 202 211 44 chr12 99895055 99895169 -44387320 + MIR SINE MIR 36 168 -94 185 312 156 0 chr12 99895464 99895541 -44386948 + MIR SINE MIR 83 171 -91 884 133 0 8 chr12 99895572 99895700 -44386789 + AluSq/x SINE Alu 1 127 -185 2082 130 0 0 chr12 99895704 99896016 -44386473 + AluSp SINE Alu 1 312 0 272 201 28 35 chr12 99896027 99896171 -44386318 + (TTAA)n Simple_repeat Simple_repeat 2 144 0 2250 168 73 3 chr12 99896366 99896736 -44385753 - MSTD LTR MaLR 0 396 1 705 215 30 85 chr12 99896782 99896825 -44385664 - MER5A DNA MER1_type 0 189 145 652 188 9 0 chr12 99896825 99896937 -44385552 - MER81 DNA DNA 0 114 2 705 215 30 85 chr12 99896937 99897093 -44385396 - MER5A DNA MER1_type -44 145 1 1530 176 9 151 chr12 99897093 99897518 -44384971 + MLT1A1 LTR MaLR 1 365 0 2198 99 3 23 chr12 99897828 99898131 -44384358 - AluSx SINE Alu -15 297 1 661 293 23 14 chr12 99899002 99899217 -44383272 + LTR16A LTR ERVL 229 445 -5 266 248 59 40 chr12 99899237 99899338 -44383151 + L2 LINE L2 3169 3271 -1 265 288 147 49 chr12 99900038 99900222 -44382267 + MIR SINE MIR 20 221 -41 815 234 25 4 chr12 99900252 99900487 -44382002 + L1MA7 LINE L1 6052 6291 0 606 28 0 0 chr12 99900952 99901024 -44381465 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 1217 90 0 6 chr12 99901024 99901202 -44381287 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 243 0 0 0 chr12 99901202 99901229 -44381260 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1947 116 7 0 chr12 99901230 99901507 -44380982 - AluSx SINE Alu -32 280 2 21 0 0 0 chr12 99901528 99901549 -44380940 + AT_rich Low_complexity Low_complexity 1 21 0 340 289 67 95 chr12 99901673 99901926 -44380563 + L2 LINE L2 3027 3272 0 2100 141 0 0 chr12 99902191 99902490 -44379999 - AluSx SINE Alu -13 299 1 435 281 66 0 chr12 99902490 99902611 -44379878 - MIR3 SINE MIR -14 194 66 632 252 186 92 chr12 99902642 99903098 -44379391 + MLT1K LTR MaLR 70 568 -20 543 261 36 6 chr12 99903935 99904100 -44378389 + L1ME3A LINE L1 5993 6162 -8 697 307 101 31 chr12 99904393 99904510 -44377979 + L2 LINE L2 2543 2650 -663 2949 97 51 10 chr12 99904510 99904921 -44377568 + MSTA LTR MaLR 1 428 0 697 307 101 31 chr12 99904921 99905445 -44377044 + L2 LINE L2 2650 3247 -66 644 185 9 0 chr12 99905462 99905570 -44376919 - FLAM_A SINE Alu -32 110 2 896 272 143 14 chr12 99905572 99906006 -44376483 - LTR33 LTR ERVL -28 493 4 225 175 0 0 chr12 99906041 99906081 -44376408 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 296 326 141 0 chr12 99906124 99906308 -44376181 - MIR SINE MIR -6 256 47 414 228 108 6 chr12 99906783 99906941 -44375548 - L1ME4a LINE L1 -209 5912 5739 2281 107 7 3 chr12 99906998 99907308 -44375181 - AluSx SINE Alu -1 311 1 233 178 44 0 chr12 99907518 99907563 -44374926 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 749 236 3 139 chr12 99907963 99908088 -44374401 + MIR SINE MIR 3 65 -197 1569 170 31 48 chr12 99908088 99908382 -44374107 - AluJo SINE Alu -23 289 1 749 236 3 139 chr12 99908382 99908557 -44373932 + MIR SINE MIR 65 262 0 673 235 206 0 chr12 99908617 99908821 -44373668 + Charlie8 DNA MER1_type 3 248 -2169 413 251 72 77 chr12 99908850 99909045 -44373444 - MLT1L LTR MaLR -11 604 411 1783 153 52 38 chr12 99909651 99909997 -44372492 + THE1C LTR MaLR 1 351 -24 22 35 0 0 chr12 99909997 99910026 -44372463 + AT_rich Low_complexity Low_complexity 1 29 0 854 21 0 0 chr12 99910026 99910120 -44372369 - L1PA3 LINE L1 -4 6151 6058 1348 201 10 100 chr12 99910253 99910306 -44372183 + MLT1A1 LTR MaLR 2 58 -307 2116 116 10 0 chr12 99910306 99910598 -44371891 - AluSx SINE Alu -17 295 1 1348 201 10 100 chr12 99910598 99910885 -44371604 + MLT1A1 LTR MaLR 58 297 -68 2264 92 3 3 chr12 99910885 99911178 -44371311 + AluSc SINE Alu 1 293 -16 1348 201 10 100 chr12 99911178 99911242 -44371247 + MLT1A1 LTR MaLR 297 365 0 2413 92 7 0 chr12 99912060 99912366 -44370123 + AluSx SINE Alu 1 308 -4 416 263 42 8 chr12 99913000 99913118 -44369371 + L2 LINE L2 2902 3023 -249 1642 152 121 3 chr12 99913270 99913560 -44368929 + MSTB LTR MaLR 1 324 -102 2340 141 97 0 chr12 99913562 99913952 -44368537 + MSTA LTR MaLR 1 428 0 183 308 0 0 chr12 99913981 99914033 -44368456 + L2 LINE L2 3262 3313 0 4595 175 44 32 chr12 99914209 99915902 -44366587 - L1MB7 LINE L1 0 6253 4546 3227 239 47 32 chr12 99915899 99916078 -44366411 - L1MB7 LINE L1 -3180 3035 2860 * 2701 111 0 52 chr12 99916078 99916190 -44366299 + L1PA16 LINE L1 5762 5878 -288 2157 112 7 0 chr12 99916190 99916477 -44366012 - AluSg SINE Alu -21 289 1 2701 111 0 52 chr12 99916477 99916786 -44365703 + L1PA16 LINE L1 5878 6161 -5 3227 239 47 32 chr12 99916786 99916825 -44365664 - L1MB7 LINE L1 -3355 2860 2823 2080 150 0 0 chr12 99916825 99917132 -44365357 + AluSx SINE Alu 1 307 -5 3227 239 47 32 chr12 99917132 99918248 -44364241 - L1MB7 LINE L1 -3392 2823 1731 396 271 31 74 chr12 99918275 99918533 -44363956 - L1MEc LINE L1 -4451 1945 1699 2170 129 55 25 chr12 99918772 99919136 -44363353 + THE1C LTR MaLR 1 375 0 4335 92 12 10 chr12 99919153 99919754 -44362735 + THE1C-int LTR MaLR 979 1580 0 1197 112 76 58 chr12 99919754 99919930 -44362559 + THE1C LTR MaLR 1 183 -192 2263 100 3 0 chr12 99919930 99920239 -44362250 + AluSp SINE Alu 1 310 -3 1197 112 76 58 chr12 99920239 99920285 -44362204 + THE1C LTR MaLR 183 227 -148 1765 149 109 32 chr12 99920514 99920862 -44361627 + THE1C LTR MaLR 1 375 0 425 246 144 7 chr12 99921151 99921421 -44361068 - L1ME LINE L1 -463 6093 5736 22 0 0 0 chr12 99921446 99921468 -44361021 + AT_rich Low_complexity Low_complexity 1 22 0 714 260 89 101 chr12 99922061 99922657 -44359832 - L1ME LINE L1 -2880 3660 3072 2368 93 0 3 chr12 99922970 99923281 -44359208 - AluSg SINE Alu 0 310 1 333 293 82 57 chr12 99923315 99923633 -44358856 - L1ME LINE L1 -5126 1414 1089 353 326 42 42 chr12 99924105 99924295 -44358194 + MIR SINE MIR 60 249 -13 456 331 36 0 chr12 99926284 99926450 -44356039 + MIR SINE MIR 21 192 -70 22 70 0 0 chr12 99926824 99926867 -44355622 + AT_rich Low_complexity Low_complexity 1 43 0 1341 259 40 42 chr12 99928351 99928453 -44354036 + MLT1J2 LTR MaLR 1 102 -348 2537 144 29 83 chr12 99928453 99928968 -44353521 - LTR45B LTR ERV1 0 489 3 1341 259 40 42 chr12 99928968 99929316 -44353173 + MLT1J2 LTR MaLR 102 450 0 240 318 99 26 chr12 99930046 99930197 -44352292 + L2 LINE L2 2928 3089 -183 216 0 0 0 chr12 99930356 99930380 -44352109 + (CA)n Simple_repeat Simple_repeat 2 25 0 411 228 94 131 chr12 99930405 99930703 -44351786 - L1ME4a LINE L1 -224 5897 5611 478 236 45 70 chr12 99930708 99930839 -44351650 - MLT1L LTR MaLR -284 331 205 2562 118 28 6 chr12 99930839 99931195 -44351294 - THE1B LTR MaLR 0 364 1 478 236 45 70 chr12 99931195 99931262 -44351227 - MLT1L LTR MaLR -410 205 138 1911 157 0 13 chr12 99931808 99932114 -44350375 + AluJb SINE Alu 1 302 -10 25 0 0 0 chr12 99932982 99933007 -44349482 + AT_rich Low_complexity Low_complexity 1 25 0 1900 167 22 48 chr12 99933373 99933693 -44348796 + MLT1A2 LTR MaLR 1 311 -63 2085 131 7 0 chr12 99933693 99933983 -44348506 + AluSx SINE Alu 1 292 -20 1900 167 22 48 chr12 99933983 99934033 -44348456 + MLT1A2 LTR MaLR 311 361 -13 185 263 105 13 chr12 99934348 99934424 -44348065 - L2 LINE L2 -173 3099 3017 2496 158 65 0 chr12 99934587 99934987 -44347502 + MSTB LTR MaLR 1 426 0 21 36 0 0 chr12 99934996 99935024 -44347465 + AT_rich Low_complexity Low_complexity 1 28 0 1208 131 0 0 chr12 99935176 99935351 -44347138 - AluSg/x SINE Alu -12 300 126 21 36 0 0 chr12 99935538 99935566 -44346923 + AT_rich Low_complexity Low_complexity 1 28 0 180 111 0 0 chr12 99935581 99935608 -44346881 + (TATG)n Simple_repeat Simple_repeat 4 30 0 267 217 0 0 chr12 99935661 99935721 -44346768 + (CA)n Simple_repeat Simple_repeat 2 61 0 193 289 13 13 chr12 99935930 99936006 -44346483 - MIR SINE MIR -4 258 183 811 166 4 179 chr12 99936148 99936299 -44346190 - MER5A DNA MER1_type 0 189 90 2493 91 0 0 chr12 99936299 99936606 -44345883 - AluSc SINE Alu -2 307 1 811 166 4 179 chr12 99936606 99936683 -44345806 - MER5A DNA MER1_type -99 90 1 221 260 0 0 chr12 99936760 99936810 -44345679 + CT-rich Low_complexity Low_complexity 1 50 0 1149 233 27 11 chr12 99937269 99937531 -44344958 - MLT1J LTR MaLR -242 269 4 300 346 19 9 chr12 99937536 99937643 -44344846 - MIR SINE MIR -109 153 46 2168 209 50 61 chr12 99937764 99938287 -44344202 + MLT2B3 LTR ERVL 1 519 -35 201 74 0 0 chr12 99938287 99938314 -44344175 + (CA)n Simple_repeat Simple_repeat 1 27 0 2168 209 50 61 chr12 99938314 99938350 -44344139 + MLT2B3 LTR ERVL 519 554 0 2074 124 3 58 chr12 99938945 99939275 -44343214 + AluSx SINE Alu 1 312 0 771 147 0 0 chr12 99939338 99939440 -44343049 - AluSq/x SINE Alu -210 103 2 1835 141 40 26 chr12 99939880 99940258 -44342231 + Tigger3(Golem) DNA MER2_type 1 3028 -1 278 256 44 11 chr12 99940371 99940461 -44342028 + L2 LINE L2 2562 2654 -660 318 219 70 125 chr12 99940469 99940597 -44341892 + LTR33A LTR ERVL 19 139 -384 180 0 0 0 chr12 99940727 99940747 -44341742 + (CAA)n Simple_repeat Simple_repeat 2 21 0 680 321 16 5 chr12 99940903 99941093 -44341396 - MER91A DNA MER1_type -1 195 4 1712 170 3 21 chr12 99941235 99941385 -44341104 - AluJo SINE Alu -28 284 140 2263 94 10 7 chr12 99941385 99941683 -44340806 - AluSp SINE Alu -14 299 1 1712 170 3 21 chr12 99941683 99941821 -44340668 - AluJo SINE Alu -172 140 1 714 244 47 0 chr12 99942729 99942901 -44339588 - MIR SINE MIR -72 190 11 2059 174 31 31 chr12 99943103 99943142 -44339347 - MLT2B1 LTR ERVL 0 414 376 450 0 0 0 chr12 99943142 99943192 -44339297 + (GA)n Simple_repeat Simple_repeat 1 50 0 2059 174 31 31 chr12 99943192 99943588 -44338901 - MLT2B1 LTR ERVL -38 376 1 669 210 0 0 chr12 99943662 99943781 -44338708 - MER45 DNA AcHobo -2 1579 1461 1072 174 24 73 chr12 99943781 99944001 -44338488 - MER45B DNA AcHobo -198 842 632 2267 95 3 0 chr12 99944001 99944311 -44338178 - AluSx SINE Alu 0 311 1 1072 174 24 73 chr12 99944311 99944335 -44338154 - MER45B DNA AcHobo -408 632 608 1250 179 123 24 chr12 99944363 99944615 -44337874 - MER45B DNA AcHobo -722 318 42 2225 126 0 0 chr12 99944928 99945237 -44337252 - AluSx SINE Alu -3 309 1 530 292 72 23 chr12 99945443 99945692 -44336797 - L1ME1 LINE L1 -220 5946 5648 1647 164 58 14 chr12 99945692 99945869 -44336620 - AluJo SINE Alu -7 305 108 255 61 0 0 chr12 99945869 99945902 -44336587 + (TG)n Simple_repeat Simple_repeat 2 34 0 1647 164 58 14 chr12 99945902 99946016 -44336473 - AluJo SINE Alu -204 108 1 530 292 72 23 chr12 99946016 99946198 -44336291 - L1ME1 LINE L1 -518 5648 5476 1504 254 53 33 chr12 99946433 99946889 -44335600 + MER74B LTR ERVL 75 539 -83 1832 130 13 46 chr12 99946889 99947196 -44335293 - AluJb SINE Alu -15 297 1 300 218 141 64 chr12 99947196 99947223 -44335266 - MER88 LTR ERVL -361 103 79 410 248 113 7 chr12 99947966 99948107 -44334382 + MIR SINE MIR 95 250 -12 545 232 12 79 chr12 99949072 99949112 -44333377 + MER5A DNA MER1_type 37 78 -111 2103 141 3 0 chr12 99949112 99949416 -44333073 + AluSq SINE Alu 1 305 -8 545 232 12 79 chr12 99949416 99949539 -44332950 + MER5A DNA MER1_type 78 189 0 2914 179 22 33 chr12 99949772 99950324 -44332165 + MLT2B3 LTR ERVL 1 546 -8 202 361 0 0 chr12 99950376 99950437 -44332052 - L2 LINE L2 -2 3270 3210 1504 234 130 49 chr12 99950616 99950826 -44331663 + MLT1H1 LTR MaLR 1 193 -362 2431 111 39 30 chr12 99950826 99951187 -44331302 - THE1B LTR MaLR 0 364 1 1504 234 130 49 chr12 99951187 99951484 -44331005 + MLT1H1 LTR MaLR 193 549 -6 398 308 111 19 chr12 99951706 99951914 -44330575 + MIR SINE MIR 1 227 -35 319 331 80 20 chr12 99951928 99952079 -44330410 + LTR33A LTR ERVL 2 161 -362 345 279 59 15 chr12 99952418 99952554 -44329935 - L1MEd LINE L1 -5969 150 9 2302 194 0 3 chr12 99952656 99953022 -44329467 + MLT1A1 LTR MaLR 1 365 0 360 256 115 59 chr12 99953115 99953297 -44329192 - MER20B DNA MER1_type -21 198 2 2165 117 0 28 chr12 99953655 99953972 -44328517 + AluSx SINE Alu 1 308 -4 264 253 131 20 chr12 99954026 99954125 -44328364 + MIR3 SINE MIR 97 206 -2 197 273 0 68 chr12 99954121 99954209 -44328280 - MIR SINE MIR -15 247 166 * 293 267 0 44 chr12 99954567 99954657 -44327832 + MIR SINE MIR 7 92 -170 187 324 70 14 chr12 99954683 99954754 -44327735 + MIR SINE MIR 183 257 -5 706 262 52 70 chr12 99954907 99955193 -44327296 - L2 LINE L2 0 3313 3033 758 306 115 8 chr12 99955219 99955618 -44326871 - L2 LINE L2 -703 2611 2170 210 103 0 0 chr12 99955925 99955954 -44326535 - L2 LINE L2 -14 3258 3230 2570 119 63 5 chr12 99956117 99956511 -44325978 - MSTA LTR MaLR -11 417 1 740 139 157 0 chr12 99956842 99956957 -44325532 + FLAM_C SINE Alu 1 133 0 2476 95 0 0 chr12 99957108 99957413 -44325076 + AluSq SINE Alu 1 305 -8 2001 123 0 39 chr12 99958487 99958824 -44323665 - AluSx SINE Alu 0 312 3 461 288 78 44 chr12 99958890 99959161 -44323328 + L2 LINE L2 3023 3302 -11 21 0 0 0 chr12 99959166 99959187 -44323302 + AT_rich Low_complexity Low_complexity 1 21 0 1185 178 57 140 chr12 99959778 99959863 -44322626 - L1MD3 LINE L1 -264 7731 7640 266 111 0 22 chr12 99959863 99959908 -44322581 + MADE1 DNA Mariner 37 80 0 1185 178 57 140 chr12 99959908 99960149 -44322340 - L1MD3 LINE L1 -355 7640 7392 479 291 27 9 chr12 99960160 99960380 -44322109 - L1M4 LINE L1 -3236 2910 2687 2410 100 22 51 chr12 99961295 99961610 -44320879 - MER46B DNA MER2_type -2496 235 56 1875 168 3 3 chr12 99961610 99961920 -44320569 - AluJb SINE Alu 0 312 3 2410 100 22 51 chr12 99961920 99961975 -44320514 - MER46B DNA MER2_type -2675 56 1 218 357 62 8 chr12 99962236 99962365 -44320124 + MIR SINE MIR 4 139 -123 715 214 70 12 chr12 99962379 99962560 -44319929 - Tigger3(Golem) DNA MER2_type -16 3013 1 340 301 54 38 chr12 99963523 99963709 -44318780 - L2 LINE L2 -108 3205 3017 2113 120 0 0 chr12 99965721 99966036 -44316453 - AluSx SINE Alu 0 315 1 2497 64 3 0 chr12 99967483 99967778 -44314711 - AluSp SINE Alu -17 296 1 24 67 0 0 chr12 99968153 99968198 -44314291 + AT_rich Low_complexity Low_complexity 1 45 0 214 260 0 0 chr12 99968459 99968509 -44313980 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 773 246 163 56 chr12 99970752 99970800 -44311689 - L2 LINE L2 0 3313 3272 1995 129 42 30 chr12 99970800 99971133 -44311356 - MER1B DNA MER1_type 0 337 1 773 246 163 56 chr12 99971133 99971441 -44311048 - L2 LINE L2 -41 3272 2919 452 215 85 7 chr12 99971572 99971827 -44310662 - MER113 DNA MER1_type? -34 487 131 2065 127 12 3 chr12 99971839 99972179 -44310310 + L1MA5 LINE L1 5958 6300 0 2295 85 0 3 chr12 99972304 99972598 -44309891 + AluSq SINE Alu 1 293 -20 2327 114 0 16 chr12 99972612 99972929 -44309560 + AluSx SINE Alu 1 312 0 22 0 0 0 chr12 99972971 99972993 -44309496 + AT_rich Low_complexity Low_complexity 1 22 0 564 276 88 33 chr12 99973233 99973414 -44309075 - MIR3 SINE MIR -2 206 16 470 262 12 36 chr12 99973960 99974128 -44308361 + MER5B DNA MER1_type 1 164 -14 181 239 0 22 chr12 99974137 99974183 -44308306 - MER5B DNA MER1_type -129 49 5 1912 145 27 3 chr12 99974814 99975111 -44307378 + AluSx SINE Alu 1 304 -8 706 223 22 43 chr12 99975155 99975339 -44307150 - MIR SINE MIR -3 259 80 255 169 292 0 chr12 99976473 99976538 -44305951 - MIR3 SINE MIR -6 202 119 966 218 44 15 chr12 99977159 99977365 -44305124 - MIR SINE MIR -39 223 12 332 151 13 0 chr12 99977762 99977835 -44304654 - LTR41 LTR ERVL 0 795 705 2551 77 0 0 chr12 99977835 99978148 -44304341 - AluSq SINE Alu 0 313 1 3559 223 46 31 chr12 99978394 99978506 -44303983 + L1MA8 LINE L1 2218 2327 -5238 1120 69 7 0 chr12 99978506 99978651 -44303838 + L1PA10 LINE L1 6019 6164 -4 3559 223 46 31 chr12 99978651 99980373 -44302116 + L1MA8 LINE L1 2327 4087 -3478 10235 135 33 13 chr12 99980413 99982216 -44300273 + L1MA8 LINE L1 4893 6766 -944 2005 111 27 20 chr12 99982216 99982513 -44299976 + AluSq SINE Alu 1 299 -14 10235 135 33 13 chr12 99982513 99983283 -44299206 + L1MA8 LINE L1 6766 7519 -191 1077 156 14 38 chr12 99983397 99983608 -44298881 - MER2 DNA MER2_type -139 206 1 443 226 35 0 chr12 99983613 99983728 -44298761 + L1MA8 LINE L1 7520 7638 -72 1000 184 58 116 chr12 99983735 99984116 -44298373 + MLT1A1 LTR MaLR 1 359 -6 362 145 0 0 chr12 99984125 99984187 -44298302 + L1MA8 LINE L1 7643 7704 -6 740 243 76 33 chr12 99984268 99984569 -44297920 - MER39 LTR ERV1 0 707 394 1410 154 45 19 chr12 99985341 99985608 -44296881 + MER58B DNA MER1_type 68 341 0 2330 84 0 0 chr12 99987028 99987324 -44295165 - AluY SINE Alu -15 296 1 309 335 129 34 chr12 99987389 99987598 -44294891 + L2 LINE L2 2951 3179 -93 21 36 0 0 chr12 99987643 99987671 -44294818 + AT_rich Low_complexity Low_complexity 1 28 0 333 202 11 34 chr12 99987747 99987836 -44294653 - MLT1J LTR MaLR 0 511 425 234 255 0 0 chr12 99987836 99987887 -44294602 + CT-rich Low_complexity Low_complexity 3 53 0 333 0 0 0 chr12 99987890 99987927 -44294562 + (CA)n Simple_repeat Simple_repeat 2 38 0 463 184 14 92 chr12 99987952 99988093 -44294396 - MLT1J LTR MaLR -116 395 266 1985 156 0 13 chr12 99989942 99990256 -44292233 - AluJb SINE Alu -2 310 1 827 186 38 23 chr12 99990258 99990520 -44291969 - L1MD3 LINE L1 0 7995 6098 977 134 0 7 chr12 99990573 99990715 -44291774 - FLAM_C SINE Alu -2 141 1 356 326 38 54 chr12 99990792 99990976 -44291513 + MIR3 SINE MIR 13 193 -15 * 729 295 135 56 chr12 99990938 99991816 -44290673 + L2 LINE L2 2348 3313 0 22 70 0 0 chr12 99991852 99991895 -44290594 + AT_rich Low_complexity Low_complexity 1 43 0 838 231 145 78 chr12 99993856 99994359 -44288130 - MLT1H1 LTR MaLR -10 545 9 235 253 263 0 chr12 99994706 99994805 -44287684 - L2 LINE L2 -15 3257 3133 647 266 157 9 chr12 99994925 99995219 -44287270 + L2 LINE L2 2742 3066 -247 463 222 37 9 chr12 99995243 99995351 -44287138 + L2 LINE L2 3203 3313 0 1466 159 12 0 chr12 99995386 99995631 -44286858 - MLT1A1 LTR MaLR -9 356 109 4114 101 10 3 chr12 99995850 99996447 -44286042 - L1PA14 LINE L1 0 6161 5561 689 234 81 112 chr12 99996615 99996928 -44285561 - MLT1H LTR MaLR -35 514 218 2405 100 3 0 chr12 99996928 99997239 -44285250 - AluSx SINE Alu 0 312 1 689 234 81 112 chr12 99997239 99997370 -44285119 - MLT1H LTR MaLR -331 218 84 791 280 77 58 chr12 99997936 99998346 -44284143 + L2 LINE L2 2632 3062 -251 2253 117 0 0 chr12 99998351 99998650 -44283839 - AluSx SINE Alu -13 299 1 340 270 72 40 chr12 99998720 99998872 -44283617 + MIR SINE MIR 105 261 -1 268 340 60 45 chr12 99998859 99999059 -44283430 + L2 LINE L2 3111 3313 0 * 285 440 54 8 chr12 99999183 99999424 -44283065 + L3 LINE CR1 48 299 -1278 308 310 71 35 chr12 99999458 99999571 -44282918 - MIR3 SINE MIR -77 131 15 987 168 69 34 chr12 99999903 99999996 -44282493 + MER33 DNA MER1_type 2 90 -2495 1300 210 65 9 chr12 99999996 100000320 -44282169 + MER2 DNA MER2_type 2 343 -1 987 168 69 34 chr12 100000320 100000517 -44281972 + MER33 DNA MER1_type 90 302 -22 723 286 180 6 chr12 100000542 100000881 -44281608 + L3 LINE CR1 1179 1576 -1 344 249 177 53 chr12 100001076 100001483 -44281006 - MLT1L LTR MaLR 0 615 95 22 0 0 0 chr12 100001650 100001672 -44280817 + AT_rich Low_complexity Low_complexity 1 22 0 193 292 0 0 chr12 100001732 100001780 -44280709 - MIR SINE MIR -56 152 105 598 138 0 0 chr12 100002123 100002210 -44280279 + FLAM SINE Alu 38 124 -19 24 32 0 0 chr12 100002210 100002241 -44280248 + AT_rich Low_complexity Low_complexity 1 31 0 2146 112 34 0 chr12 100002454 100002749 -44279740 + AluSx SINE Alu 1 305 -7 10334 211 28 14 chr12 100002794 100004123 -44278366 - L1MC1 LINE L1 0 6613 5304 1998 132 17 10 chr12 100004123 100004411 -44278078 - AluSx SINE Alu -18 294 5 10334 211 28 14 chr12 100004411 100005350 -44277139 - L1MC1 LINE L1 -1309 5304 4380 1969 174 0 0 chr12 100005350 100005654 -44276835 - AluJb SINE Alu -8 304 1 10334 211 28 14 chr12 100005654 100007693 -44274796 - L1MC1 LINE L1 -2233 4380 2244 738 177 0 16 chr12 100007697 100007821 -44274668 - FLAM_C SINE Alu -17 126 5 4836 122 47 36 chr12 100007821 100008072 -44274417 - L1MC1 LINE L1 -4174 2252 2005 1828 156 39 18 chr12 100008072 100008405 -44274084 - MER2 DNA MER2_type -4 340 1 4836 122 47 36 chr12 100008405 100009569 -44272920 - L1MC1 LINE L1 -4421 2005 722 2547 205 13 59 chr12 100009625 100010319 -44272170 + LTR8 LTR ERV1 30 691 0 1293 126 26 140 chr12 100010319 100010669 -44271820 - L1MC1 LINE L1 -5699 727 418 1203 152 21 21 chr12 100010672 100010688 -44271801 - L1MC1 LINE L1 -6185 241 226 2114 119 3 13 chr12 100010688 100010991 -44271498 + AluJb SINE Alu 1 300 -12 1203 152 21 21 chr12 100010991 100011211 -44271278 - L1MC1 LINE L1 -6199 227 5 2413 50 0 0 chr12 100011436 100011754 -44270735 - AluY SINE Alu 0 318 1 511 264 127 24 chr12 100012387 100012599 -44269890 - MIR SINE MIR -16 246 13 2233 126 3 0 chr12 100012689 100012998 -44269491 - AluSq SINE Alu -3 310 1 425 274 114 49 chr12 100014487 100014732 -44267757 + L2 LINE L2 3011 3271 -1 329 259 36 42 chr12 100014894 100015087 -44267402 + L1M4 LINE L1 4405 4596 -1550 661 256 92 4 chr12 100015263 100015490 -44266999 + L1M4 LINE L1 3640 3886 -2260 726 227 11 24 chr12 100015551 100015820 -44266669 - MER46C DNA MER2_type 0 338 8 2264 97 7 0 chr12 100016099 100016398 -44266091 + AluSp SINE Alu 1 301 -12 306 306 6 6 chr12 100016459 100016616 -44265873 + L1M4 LINE L1 5217 5373 -773 1340 108 16 5 chr12 100016752 100016937 -44265552 + AluSg/x SINE Alu 107 293 -19 1622 117 13 25 chr12 100017015 100017254 -44265235 - AluSq SINE Alu -77 236 1 1512 206 35 14 chr12 100017334 100017616 -44264873 + AluJo SINE Alu 1 288 -24 719 113 7 106 chr12 100017624 100017765 -44264724 + FLAM_C SINE Alu 1 127 -6 31 0 0 0 chr12 100017765 100017796 -44264693 + AT_rich Low_complexity Low_complexity 1 31 0 334 258 73 73 chr12 100017977 100018128 -44264361 + L2 LINE L2 3072 3222 -50 1714 191 0 10 chr12 100018195 100018332 -44264157 + AluJb SINE Alu 1 138 -174 2182 116 3 0 chr12 100018332 100018638 -44263851 + AluSq SINE Alu 1 307 0 1714 191 0 10 chr12 100018638 100018802 -44263687 + AluJb SINE Alu 138 300 -12 235 330 45 55 chr12 100019070 100019261 -44263228 + MIR SINE MIR 16 202 -35 1604 135 85 43 chr12 100019473 100019755 -44262734 - AluJo SINE Alu -18 294 1 981 124 0 7 chr12 100020462 100020599 -44261890 + AluSq/x SINE Alu 1 136 -177 1894 148 22 0 chr12 100020599 100020903 -44261586 + AluSx SINE Alu 1 310 0 2862 139 42 6 chr12 100021129 100021602 -44260887 + L1PA16 LINE L1 5675 6164 -2 328 208 39 13 chr12 100021905 100021982 -44260507 + L1ME4a LINE L1 5955 6033 -88 453 90 26 26 chr12 100022023 100022101 -44260388 + Alu SINE Alu 233 310 0 938 126 0 8 chr12 100022421 100022548 -44259941 - FLAM_C SINE Alu -7 126 1 21 89 0 0 chr12 100022644 100022700 -44259789 + AT_rich Low_complexity Low_complexity 1 56 0 189 0 0 0 chr12 100023318 100023339 -44259150 + (TAA)n Simple_repeat Simple_repeat 1 21 0 229 322 96 0 chr12 100023577 100023692 -44258797 + MIR SINE MIR 66 191 -71 245 291 64 27 chr12 100023935 100024045 -44258444 - MIR SINE MIR -56 152 39 1774 131 57 3 chr12 100024767 100025050 -44257439 - AluJo SINE Alu -8 304 7 930 239 111 60 chr12 100025329 100025547 -44256942 + L2 LINE L2 2926 3172 -141 2202 116 3 0 chr12 100025547 100025849 -44256640 - AluSx SINE Alu -9 303 1 930 239 111 60 chr12 100025849 100025998 -44256491 + L2 LINE L2 3172 3312 -1 214 244 154 39 chr12 100026709 100026787 -44255702 - L2 LINE L2 -436 2878 2792 833 139 14 49 chr12 100026845 100026989 -44255500 + FRAM SINE Alu 8 146 -30 914 265 86 37 chr12 100027005 100027413 -44255076 - L2 LINE L2 -583 2731 2304 1227 167 5 27 chr12 100027427 100027649 -44254840 + AluJo SINE Alu 86 302 -10 235 288 47 47 chr12 100027688 100027858 -44254631 - L2 LINE L2 -1137 2177 2008 2151 116 0 55 chr12 100027977 100028306 -44254183 - AluSx SINE Alu -1 311 1 2227 116 7 0 chr12 100028648 100028950 -44253539 + AluSq SINE Alu 1 304 -9 909 113 0 57 chr12 100029015 100029156 -44253333 + AluJ SINE Alu 1 133 -169 1155 181 0 0 chr12 100029205 100029387 -44253102 + AluJ SINE Alu 120 301 -11 208 327 97 35 chr12 100029452 100029565 -44252924 - L2 LINE L2 -37 3235 3116 4928 75 8 13 chr12 100029624 100030260 -44252229 + LTR10E LTR ERV1 1 633 0 692 140 0 0 chr12 100030458 100030558 -44251931 + AluJ/FLAM SINE Alu 2 101 -211 2579 61 0 0 chr12 100030720 100031031 -44251458 + AluY SINE Alu 1 311 0 2366 81 0 3 chr12 100031420 100031715 -44250774 + AluSc SINE Alu 1 294 -15 245 336 57 14 chr12 100031966 100032106 -44250383 - MER5A DNA MER1_type 0 189 44 234 309 86 29 chr12 100031991 100032130 -44250359 + MER5A DNA MER1_type 38 184 -5 * 234 0 0 0 chr12 100032224 100032250 -44250239 + (T)n Simple_repeat Simple_repeat 1 26 0 2027 92 7 48 chr12 100032669 100032986 -44249503 - AluSx SINE Alu 0 305 1 349 319 18 0 chr12 100033771 100033884 -44248605 - L2 LINE L2 0 3272 3158 2292 109 0 10 chr12 100034221 100034532 -44247957 + AluSx SINE Alu 3 310 -2 1202 174 170 12 chr12 100034547 100034806 -44247683 + AluJo SINE Alu 1 300 -12 352 45 0 0 chr12 100035141 100035185 -44247304 - L1MA3 LINE L1 -8 6297 6254 1675 142 39 25 chr12 100035261 100035543 -44246946 + AluJb SINE Alu 1 286 -26 1998 153 3 0 chr12 100035545 100035852 -44246637 - AluSq SINE Alu -5 308 1 772 187 43 144 chr12 100035852 100036221 -44246268 - L1MA9 LINE L1 -30 6282 5951 423 280 98 8 chr12 100036565 100036697 -44245792 - MIR SINE MIR -19 243 100 2001 156 0 0 chr12 100036792 100037093 -44245396 + AluSx SINE Alu 1 301 -11 245 269 91 102 chr12 100037157 100037283 -44245206 - MER5A DNA MER1_type -5 184 59 216 0 0 0 chr12 100037283 100037307 -44245182 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 245 269 91 102 chr12 100037307 100037366 -44245123 - MER5A DNA MER1_type -130 59 1 869 221 67 78 chr12 100037370 100037756 -44244733 + MLT1G1 LTR MaLR 1 341 -201 200 300 58 17 chr12 100038002 100038122 -44244367 + MIR SINE MIR 111 235 -27 432 299 69 89 chr12 100038187 100038478 -44244011 + L2 LINE L2 2915 3199 -73 230 204 284 11 chr12 100038590 100038678 -44243811 + MIR SINE MIR 127 238 -24 203 216 0 20 chr12 100039132 100039183 -44243306 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 23 33 0 0 chr12 100039986 100040016 -44242473 + GC_rich Low_complexity Low_complexity 1 30 0 204 40 0 0 chr12 100040445 100040470 -44242019 + (TCTCC)n Simple_repeat Simple_repeat 2 26 0 344 217 24 24 chr12 100040470 100040553 -44241936 - FLAM SINE Alu -8 125 43 1493 203 36 0 chr12 100041995 100042296 -44240193 - AluJo SINE Alu 0 312 1 239 263 212 15 chr12 100042432 100042569 -44239920 - MIR SINE MIR -41 221 58 637 300 163 26 chr12 100042678 100043390 -44239099 + L2 LINE L2 2488 3313 0 1913 139 29 0 chr12 100043691 100043987 -44238502 - AluSx SINE Alu 0 304 1 898 185 22 51 chr12 100044127 100044305 -44238184 - FAM SINE Alu -2 173 1 832 138 0 23 chr12 100044392 100044522 -44237967 - FLAM_C SINE Alu -16 127 1 241 282 43 17 chr12 100044527 100044644 -44237845 - L1MC/D LINE L1 -2035 5773 5654 755 182 8 8 chr12 100044741 100044873 -44237616 + FLAM_C SINE Alu 1 132 -11 1702 164 11 14 chr12 100045098 100045385 -44237104 + AluJb SINE Alu 1 286 -26 323 68 91 0 chr12 100045595 100045639 -44236850 - Alu SINE Alu -14 288 241 840 141 0 8 chr12 100045855 100045983 -44236506 - AluSg/x SINE Alu -18 294 168 2281 110 0 0 chr12 100046002 100046303 -44236186 - AluSq SINE Alu -12 301 1 778 201 40 13 chr12 100046423 100046603 -44235886 + FRAM SINE Alu 1 177 0 2222 78 3 7 chr12 100047191 100047473 -44235016 - AluSc SINE Alu -18 291 11 209 333 14 0 chr12 100047483 100047555 -44234934 - MIR3 SINE MIR -36 172 100 2461 53 0 10 chr12 100048261 100048560 -44233929 + AluY SINE Alu 1 296 -15 2146 76 4 0 chr12 100049278 100049542 -44232947 - AluSg SINE Alu -45 265 1 530 266 169 19 chr12 100049888 100050095 -44232394 - MIR SINE MIR 0 262 25 2445 55 7 3 chr12 100050258 100050547 -44231942 - AluSq SINE Alu -23 290 1 1014 116 148 213 chr12 100050550 100050860 -44231629 - AluJb SINE Alu -9 293 4 5409 109 86 12 chr12 100051095 100051987 -44230502 - Tigger3b DNA MER2_type 0 1231 274 590 174 41 0 chr12 100051985 100052083 -44230406 - Tigger3b DNA MER2_type -1129 102 1 * 2401 95 0 0 chr12 100052198 100052504 -44229985 - AluSg SINE Alu -4 306 1 212 263 35 0 chr12 100053033 100053090 -44229399 - L2 LINE L2 -219 3053 2995 1801 171 0 14 chr12 100053273 100053565 -44228924 + AluJb SINE Alu 1 288 -24 2005 146 47 9 chr12 100053728 100054071 -44228418 - L1MB7 LINE L1 -16 6168 5813 787 97 0 57 chr12 100054216 100054273 -44228216 + MER30 DNA MER1_type 1 49 -181 2103 99 42 0 chr12 100054273 100054556 -44227933 + AluSx SINE Alu 1 295 -17 787 97 0 57 chr12 100054556 100054622 -44227867 + MER30 DNA MER1_type 49 117 -113 199 239 65 0 chr12 100055981 100056027 -44226462 - L2 LINE L2 -86 3186 3138 427 248 237 10 chr12 100056240 100056438 -44226051 + MIR SINE MIR 20 262 0 255 292 56 14 chr12 100056796 100056868 -44225621 - MER91C DNA MER1_type -32 108 34 232 362 19 38 chr12 100057812 100057917 -44224572 - MIR SINE MIR -86 122 20 489 250 143 62 chr12 100058179 100058423 -44224066 - LTR67 LTR ERVL -23 534 271 1876 89 0 48 chr12 100060035 100060305 -44222184 + AluY SINE Alu 45 301 -10 380 239 387 0 chr12 100060337 100060479 -44222010 + MIR SINE MIR 34 230 -32 229 293 30 81 chr12 100060558 100060657 -44221832 - L2 LINE L2 -93 3179 3086 187 262 60 60 chr12 100061789 100061873 -44220616 + MIR3 SINE MIR 91 174 -34 2262 80 35 0 chr12 100062088 100062375 -44220114 - AluSp SINE Alu -16 297 1 1225 170 78 7 chr12 100062543 100062825 -44219664 + MER33 DNA MER1_type 23 324 0 216 0 0 0 chr12 100063102 100063126 -44219363 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1135 172 10 34 chr12 100063129 100063333 -44219156 - AluJo SINE Alu -30 282 84 716 147 69 0 chr12 100063363 100063479 -44219010 + FLAM_C SINE Alu 2 125 -18 25 51 0 0 chr12 100063621 100063660 -44218829 + AT_rich Low_complexity Low_complexity 1 39 0 781 143 0 50 chr12 100064618 100064758 -44217731 - FLAM_C SINE Alu 0 133 1 1491 110 203 8 chr12 100064793 100065039 -44217450 + AluSg1 SINE Alu 1 294 -15 229 290 28 37 chr12 100066348 100066455 -44216034 - Charlie7 DNA MER1_type -2500 112 7 2189 246 150 41 chr12 100066533 100067019 -44215470 - L2 LINE L2 -8 3305 2874 2296 99 7 0 chr12 100067019 100067321 -44215168 - AluSp SINE Alu -7 306 3 2344 76 3 0 chr12 100067323 100067611 -44214878 - AluSx SINE Alu -23 289 1 2189 246 150 41 chr12 100067611 100068452 -44214037 - L2 LINE L2 -439 2874 1804 4909 53 3 0 chr12 100068452 100069033 -44213456 + LTR10C LTR ERV1 7 589 -2 1171 274 86 13 chr12 100069039 100069422 -44213067 - L2 LINE L2 -1745 1569 1159 1863 156 7 13 chr12 100069499 100069807 -44212682 + AluJb SINE Alu 1 306 -6 261 0 0 0 chr12 100071790 100071819 -44210670 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 667 208 99 109 chr12 100073728 100074040 -44208449 + MER102a DNA MER1_type 19 327 -3 205 175 0 88 chr12 100074249 100074306 -44208183 - L2 LINE L2 -310 2962 2911 910 131 0 23 chr12 100074340 100074470 -44208019 + FLAM_C SINE Alu 1 127 -6 1622 179 93 0 chr12 100074628 100074941 -44207548 + MER2 DNA MER2_type 2 343 -1 2173 103 0 28 chr12 100075182 100075502 -44206987 - AluY SINE Alu 0 311 1 591 244 33 13 chr12 100076448 100076670 -44205819 - MER58B DNA MER1_type -32 309 1 311 267 52 10 chr12 100076997 100077107 -44205382 - L1MC/D LINE L1 -528 5642 5542 2261 93 0 7 chr12 100077869 100078169 -44204320 + AluSg SINE Alu 1 298 -12 197 208 94 38 chr12 100078195 100078248 -44204241 + L2 LINE L2 3179 3234 -79 849 141 7 22 chr12 100078319 100078454 -44204035 + FLAM_C SINE Alu 1 133 0 920 103 0 0 chr12 100080580 100080696 -44201793 + AluSg SINE Alu 1 116 -194 1873 132 17 17 chr12 100080979 100081266 -44201223 - AluSx SINE Alu -25 287 1 306 246 47 70 chr12 100081584 100081755 -44200734 + L2 LINE L2 3110 3276 -37 2094 123 0 41 chr12 100082734 100083050 -44199439 - AluSq SINE Alu -10 303 1 2197 118 7 3 chr12 100083084 100083388 -44199101 - AluSp SINE Alu -8 305 1 281 212 220 34 chr12 100083727 100083845 -44198644 - MIR3 SINE MIR -4 204 65 238 222 349 0 chr12 100083938 100084001 -44198488 + MER63 DNA MER1_type 1 711 -351 1047 221 139 76 chr12 100084338 100084653 -44197836 - MLT1H LTR MaLR -2 547 194 1680 128 3 100 chr12 100084653 100084780 -44197709 + AluJo SINE Alu 1 139 -173 2136 112 7 0 chr12 100084780 100085067 -44197422 - AluSp SINE Alu -24 289 1 1680 128 3 100 chr12 100085067 100085268 -44197221 + AluJo SINE Alu 139 297 -15 1047 221 139 76 chr12 100085268 100085399 -44197090 - MLT1H LTR MaLR -355 194 73 2315 114 0 0 chr12 100085728 100086026 -44196463 + AluSx SINE Alu 1 298 -14 1043 207 70 16 chr12 100086026 100086282 -44196207 - L1ME LINE L1 -578 5586 5317 1833 150 57 7 chr12 100086309 100086609 -44195880 + 7SLRNA srpRNA srpRNA 1 315 -5 5308 158 51 17 chr12 100086609 100087673 -44194816 - L1MC1 LINE L1 -12 6321 5221 2306 96 3 0 chr12 100088996 100089289 -44193200 + AluSg SINE Alu 6 299 -11 495 247 82 20 chr12 100089316 100089462 -44193027 - MIR SINE MIR -106 156 2 661 242 0 0 chr12 100089499 100089627 -44192862 + FLAM_A SINE Alu 2 129 -4 238 143 41 20 chr12 100089665 100089714 -44192775 - L1ME4a LINE L1 -103 6018 5969 702 197 24 0 chr12 100089721 100089848 -44192641 - FLAM_A SINE Alu -3 130 1 200 159 159 0 chr12 100089871 100089915 -44192574 - MIR SINE MIR -1 261 211 805 156 0 0 chr12 100090167 100090289 -44192200 + FLAM_C SINE Alu 5 126 -17 2171 103 0 10 chr12 100090321 100090622 -44191867 + AluSg SINE Alu 1 298 -12 197 208 94 38 chr12 100090648 100090701 -44191788 + L2 LINE L2 3179 3234 -79 842 154 0 7 chr12 100090772 100090908 -44191581 + FLAM_C SINE Alu 1 135 -8 2215 91 25 0 chr12 100093034 100093320 -44189169 + AluSg SINE Alu 1 293 -17 781 143 0 50 chr12 100094720 100094860 -44187629 - FLAM_C SINE Alu 0 133 1 2313 103 3 0 chr12 100094895 100095195 -44187294 + AluSx SINE Alu 1 301 -11 495 247 82 20 chr12 100095222 100095368 -44187121 - MIR SINE MIR -106 156 2 661 242 0 0 chr12 100095405 100095533 -44186956 + FLAM_A SINE Alu 2 129 -4 829 189 0 0 chr12 100095627 100095759 -44186730 - FLAM_A SINE Alu -1 132 1 200 159 159 0 chr12 100095782 100095826 -44186663 - MIR SINE MIR -1 261 211 805 156 0 0 chr12 100096078 100096200 -44186289 + FLAM_C SINE Alu 5 126 -17 2291 92 3 0 chr12 100096232 100096524 -44185965 + AluSg SINE Alu 1 293 -17 2072 151 0 3 chr12 100096530 100096834 -44185655 + AluJb SINE Alu 3 305 -7 528 193 0 0 chr12 100096870 100096958 -44185531 - FLAM_A SINE Alu -18 124 37 236 211 0 39 chr12 100097036 100097088 -44185401 - L2 LINE L2 0 3313 3264 364 296 129 21 chr12 100097200 100097386 -44185103 - L2 LINE L2 -182 3090 2885 690 136 7 100 chr12 100097386 100097526 -44184963 + FLAM_C SINE Alu 6 132 -11 821 71 0 0 chr12 100097624 100097723 -44184766 + HY3 scRNA scRNA 1 99 -2 1109 156 0 0 chr12 100098039 100098212 -44184277 + AluSg/x SINE Alu 129 301 -11 312 167 0 33 chr12 100098214 100098274 -44184215 + MLT1J1 LTR MaLR 67 124 -322 * 545 255 116 56 chr12 100098260 100098527 -44183962 + MLT1J LTR MaLR 205 487 -24 284 79 0 0 chr12 100098500 100098538 -44183951 - MADE1 DNA Mariner -15 65 28 * 360 0 0 0 chr12 100099138 100099178 -44183311 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1768 166 0 7 chr12 100099181 100099470 -44183019 - AluJb SINE Alu -25 287 1 521 282 21 106 chr12 100099528 100099812 -44182677 + MIR SINE MIR 2 261 -1 2230 133 0 0 chr12 100099997 100100299 -44182190 + AluSx SINE Alu 1 302 -10 598 270 82 62 chr12 100100305 100100432 -44182057 - LTR33 LTR ERVL 0 521 398 291 54 0 0 chr12 100100432 100100469 -44182020 + (TAG)n Simple_repeat Simple_repeat 3 39 0 598 270 82 62 chr12 100100469 100100697 -44181792 - LTR33 LTR ERVL -123 398 159 263 136 0 152 chr12 100100691 100100757 -44181732 - MER21B LTR ERV1 -190 673 618 * 311 65 22 0 chr12 100100770 100100816 -44181673 + (TG)n Simple_repeat Simple_repeat 2 48 0 193 206 10 41 chr12 100100863 100100960 -44181529 + (TA)n Simple_repeat Simple_repeat 2 95 0 1626 169 21 17 chr12 100101048 100101338 -44181151 - AluJb SINE Alu -21 291 1 1770 224 15 58 chr12 100101365 100101963 -44180526 - L1MC5 LINE L1 -44 7917 7346 2372 191 40 15 chr12 100101997 100102117 -44180372 + L1PA16 LINE L1 5662 5778 -388 384 22 0 0 chr12 100102117 100102162 -44180327 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 2372 191 40 15 chr12 100102162 100102517 -44179972 + L1PA16 LINE L1 5778 6149 -17 30 0 0 0 chr12 100102517 100102547 -44179942 + AT_rich Low_complexity Low_complexity 1 30 0 884 167 8 0 chr12 100102776 100102908 -44179581 + FLAM_C SINE Alu 1 133 0 2956 70 3 3 chr12 100102979 100103348 -44179141 + L1PA8 LINE L1 5801 6169 -3 1139 88 0 0 chr12 100103446 100103583 -44178906 + AluSq/x SINE Alu 1 137 -176 2054 110 0 33 chr12 100103585 100103884 -44178605 + AluSx SINE Alu 4 292 -20 328 289 26 9 chr12 100104054 100104168 -44178321 + HAL1 LINE L1 273 388 -2119 1619 167 13 31 chr12 100104286 100104603 -44177886 + AluJo SINE Alu 1 311 -1 553 227 23 8 chr12 100104630 100104758 -44177731 + LTR67 LTR ERVL 428 557 0 1503 124 37 0 chr12 100104838 100105055 -44177434 - AluSx SINE Alu -87 225 1 309 239 8 86 chr12 100105055 100105150 -44177339 + L2 LINE L2 3205 3291 -22 2178 139 0 0 chr12 100105150 100105453 -44177036 - AluSx SINE Alu -7 305 3 309 239 8 86 chr12 100105453 100105474 -44177015 + L2 LINE L2 3291 3312 -1 21 57 0 0 chr12 100106737 100106772 -44175717 + AT_rich Low_complexity Low_complexity 1 35 0 486 206 78 0 chr12 100107786 100107888 -44174601 - FLAM_C SINE Alu -18 125 16 511 159 37 37 chr12 100107940 100108047 -44174442 - AluSg/x SINE Alu -1 308 202 22 56 0 0 chr12 100108999 100109035 -44173454 + AT_rich Low_complexity Low_complexity 1 36 0 486 206 78 0 chr12 100110051 100110153 -44172336 - FLAM_C SINE Alu -18 125 16 2216 101 16 10 chr12 100110204 100110511 -44171978 - AluSg SINE Alu -1 309 1 190 262 155 24 chr12 100110625 100110709 -44171780 - L3 LINE CR1 -304 1273 1179 1777 151 14 7 chr12 100110747 100111038 -44171451 + AluSx SINE Alu 1 293 -19 1668 91 14 5 chr12 100111719 100111940 -44170549 - AluSg SINE Alu -87 223 1 2327 93 0 13 chr12 100112553 100112864 -44169625 + AluSc SINE Alu 1 307 -2 1144 73 0 0 chr12 100113286 100113422 -44169067 + AluSq/x SINE Alu 1 136 -177 2349 97 0 0 chr12 100113423 100113723 -44168766 + AluSx SINE Alu 1 300 -12 31 0 0 0 chr12 100114060 100114091 -44168398 + AT_rich Low_complexity Low_complexity 1 31 0 2065 94 37 24 chr12 100114270 100114567 -44167922 + AluY SINE Alu 1 301 -10 816 199 59 16 chr12 100114931 100115117 -44167372 + MER58B DNA MER1_type 123 316 -25 2070 88 3 32 chr12 100115169 100115454 -44167035 + AluSx SINE Alu 1 277 -35 2253 99 0 29 chr12 100115562 100115876 -44166613 + AluSx SINE Alu 1 305 -7 2413 86 0 3 chr12 100115986 100116288 -44166201 + AluSx SINE Alu 1 301 -11 2134 143 3 0 chr12 100116364 100116665 -44165824 + AluSx SINE Alu 5 306 -6 1425 191 15 18 chr12 100116805 100116955 -44165534 - AluJb SINE Alu -29 283 133 1938 159 0 10 chr12 100116955 100117263 -44165226 - AluSx SINE Alu -7 305 1 1425 191 15 18 chr12 100117263 100117384 -44165105 - AluJb SINE Alu -179 133 13 1517 138 76 25 chr12 100117653 100117928 -44164561 + AluJo SINE Alu 1 289 -23 2198 106 0 0 chr12 100118633 100118925 -44163564 - AluSg1 SINE Alu -17 292 1 1897 77 4 0 chr12 100119120 100119355 -44163134 - AluSp SINE Alu -77 236 1 430 160 181 0 chr12 100119642 100119736 -44162753 - MER3 DNA MER1_type -9 200 90 198 298 6 124 chr12 100221194 100221355 -44061134 - L2 LINE L2 -566 2748 2607 404 235 58 90 chr12 100221514 100221791 -44060698 + L1MC5 LINE L1 7609 7876 -85 2092 253 78 6 chr12 100221834 100222517 -44059972 + L1MEc LINE L1 34 765 -5631 559 120 0 0 chr12 100222518 100222644 -44059845 + AluSp/q SINE Alu 208 333 0 1249 262 62 47 chr12 100222646 100222908 -44059581 + L1MEc LINE L1 764 1021 -5375 2268 90 0 19 chr12 100222908 100223218 -44059271 + AluY SINE Alu 1 304 -7 1249 262 62 47 chr12 100223218 100223630 -44058859 + L1MEc LINE L1 1021 1448 -4948 1935 138 10 16 chr12 100224078 100224383 -44058106 - AluSx SINE Alu -8 304 2 390 242 13 87 chr12 100224806 100224858 -44057631 - MIR SINE MIR -1 261 207 1324 207 42 25 chr12 100224858 100225143 -44057346 - AluJo SINE Alu -22 290 1 390 242 13 87 chr12 100225143 100225239 -44057250 - MIR SINE MIR -55 207 124 386 360 128 21 chr12 100225577 100225870 -44056619 + L3 LINE CR1 1196 1531 -46 1592 198 121 33 chr12 100225870 100226299 -44056190 - MLT1C LTR MaLR 0 467 1 386 360 128 21 chr12 100226299 100226341 -44056148 + L3 LINE CR1 1531 1567 -10 310 230 250 0 chr12 100226421 100226521 -44055968 - L2 LINE L2 -2 3311 3187 325 284 99 7 chr12 100226535 100226676 -44055813 - MIR SINE MIR -19 243 90 326 221 32 0 chr12 100226701 100226796 -44055693 - L1M4 LINE L1 -3731 2415 2318 233 340 27 27 chr12 100227106 100227253 -44055236 + L3 LINE CR1 1429 1575 -2 23 68 0 0 chr12 100228429 100228473 -44054016 + AT_rich Low_complexity Low_complexity 1 44 0 1280 102 17 0 chr12 100228947 100229123 -44053366 - AluSg/x SINE Alu 0 312 134 2298 81 0 3 chr12 100229123 100229421 -44053068 - AluSx SINE Alu -15 297 1 191 286 0 0 chr12 100229873 100229922 -44052567 - L2 LINE L2 -10 3303 3255 414 57 0 0 chr12 100230089 100230142 -44052347 + (CA)n Simple_repeat Simple_repeat 2 54 0 2206 146 18 0 chr12 100230548 100230931 -44051558 + Tigger1 DNA MER2_type 1973 2362 -56 727 168 75 178 chr12 100231042 100231631 -44050858 + LOR1-int LTR ERV1 1516 2043 -6077 583 267 43 0 chr12 100231612 100231822 -44050667 + LOR1-int LTR ERV1 2343 2561 -2562 * 1354 269 26 22 chr12 100231828 100232453 -44050036 + L1M4 LINE L1 2350 2976 -3170 3789 242 98 33 chr12 100232455 100232816 -44049673 + L1ME3A LINE L1 17 353 -6187 213 39 0 0 chr12 100232816 100232842 -44049647 + (CA)n Simple_repeat Simple_repeat 1 26 0 3789 242 98 33 chr12 100232842 100233300 -44049189 + L1ME3A LINE L1 353 780 -5760 1451 200 16 32 chr12 100233300 100233615 -44048874 + AluJo SINE Alu 2 311 -1 3789 242 98 33 chr12 100233615 100233774 -44048715 + L1ME3A LINE L1 780 927 -5613 2173 107 3 7 chr12 100233774 100234059 -44048430 + AluSx SINE Alu 1 286 -26 270 0 0 0 chr12 100234059 100234089 -44048400 + (CATA)n Simple_repeat Simple_repeat 2 31 0 2173 107 3 7 chr12 100234089 100234101 -44048388 + AluSx SINE Alu 286 297 -15 3789 242 98 33 chr12 100234101 100234347 -44048142 + L1ME3A LINE L1 927 1156 -5384 2111 143 3 0 chr12 100234347 100234647 -44047842 + AluSx SINE Alu 1 301 -11 3789 242 98 33 chr12 100234647 100234839 -44047650 + L1ME3A LINE L1 1156 1528 -5012 1285 183 39 0 chr12 100234845 100235102 -44047387 + L1MB5 LINE L1 5908 6174 0 1117 271 91 53 chr12 100235200 100236187 -44046302 + L1ME3A LINE L1 4440 5464 -1076 400 248 26 20 chr12 100236228 100236381 -44046108 - L1M LINE L1 -760 5418 5265 910 242 95 91 chr12 100236395 100236729 -44045760 + L1ME3A LINE L1 5864 6195 -369 1257 123 128 0 chr12 100236729 100236830 -44045659 - MER30 DNA MER1_type 0 230 143 206 81 27 0 chr12 100236830 100236867 -44045622 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1257 123 128 0 chr12 100236867 100236969 -44045520 - MER30 DNA MER1_type -87 143 1 910 242 95 91 chr12 100236969 100237317 -44045172 + L1ME3A LINE L1 6195 6549 -15 1274 199 33 85 chr12 100237320 100237626 -44044863 - AluJb SINE Alu -22 290 1 1107 142 14 60 chr12 100237893 100238095 -44044394 - Tigger3(Golem) DNA MER2_type -4 3024 2831 3527 127 24 12 chr12 100238095 100238679 -44043810 + LTR10C LTR ERV1 1 591 0 1107 142 14 60 chr12 100238679 100238694 -44043795 - Tigger3(Golem) DNA MER2_type -197 2831 2817 442 123 0 0 chr12 100238695 100238760 -44043729 - Tigger3(Golem) DNA MER2_type -2925 104 40 2121 180 58 36 chr12 100238831 100239353 -44043136 - L1ME2 LINE L1 -106 6058 5526 2243 121 3 0 chr12 100239354 100239651 -44042838 - AluSp SINE Alu -15 298 1 249 88 0 0 chr12 100239695 100239729 -44042760 + LTR45B LTR ERV1 3 36 -453 301 337 0 25 chr12 100241251 100241414 -44041075 + GA-rich Low_complexity Low_complexity 4 162 0 782 255 52 13 chr12 100241419 100241729 -44040760 + LTR45B LTR ERV1 22 343 -146 800 271 75 40 chr12 100242216 100242670 -44039819 - L1ME3A LINE L1 -8 6162 5693 2037 232 105 39 chr12 100242698 100244362 -44038127 - L1ME3 LINE L1 -122 6040 4258 16136 194 70 18 chr12 100244451 100251663 -44030826 - L1PA13 LINE L1 -11 7590 1 2133 226 92 53 chr12 100251663 100252667 -44029822 - L1ME3 LINE L1 -1977 4169 3127 852 237 207 17 chr12 100252755 100253159 -44029330 + L2 LINE L2 2598 2924 -389 2080 124 0 7 chr12 100253159 100253466 -44029023 - AluSx SINE Alu -7 305 1 852 237 207 17 chr12 100253466 100253598 -44028891 + L2 LINE L2 2924 3254 -59 10737 52 8 2 chr12 100253724 100255454 -44027035 + L1PA6 LINE L1 3956 5692 -462 1486 50 0 0 chr12 100255454 100255627 -44026862 + L1PA6 LINE L1 5969 6150 -4 2130 112 10 13 chr12 100255822 100256127 -44026362 + AluY SINE Alu 1 304 -7 2345 108 0 0 chr12 100256564 100256871 -44025618 - AluY SINE Alu -4 307 1 2060 126 3 3 chr12 100257499 100257807 -44024682 + AluSx SINE Alu 1 308 0 202 356 14 0 chr12 100258556 100258629 -44023860 + MIR SINE MIR 30 103 -105 4275 57 17 16 chr12 100258629 100259659 -44022830 + MER11A LTR ERVK 1 1266 0 1272 197 31 80 chr12 100259710 100259999 -44022490 + AluJo SINE Alu 1 275 -37 30 0 0 0 chr12 100261054 100261084 -44021405 + AT_rich Low_complexity Low_complexity 1 30 0 604 266 103 41 chr12 100261979 100262318 -44020171 + MARNA DNA Mariner 182 541 -45 1097 239 21 90 chr12 100262497 100262886 -44019603 - L2 LINE L2 0 3313 2952 1078 86 7 7 chr12 100262900 100263039 -44019450 + AluSq/x SINE Alu 1 139 -173 4714 198 23 45 chr12 100263163 100264873 -44017616 + L1M2 LINE L1 1714 3459 -3389 1881 150 30 13 chr12 100264873 100265173 -44017316 - AluSx SINE Alu -7 305 1 4714 198 23 45 chr12 100265173 100265417 -44017072 + L1M2 LINE L1 3459 3707 -3141 2088 126 27 0 chr12 100265417 100265718 -44016771 + AluSc SINE Alu 1 309 0 4714 198 23 45 chr12 100265718 100265899 -44016590 + L1M2 LINE L1 3707 3799 -3049 2429 84 7 0 chr12 100265899 100266208 -44016281 + AluY SINE Alu 1 311 0 4714 198 23 45 chr12 100266208 100266259 -44016230 + L1M2 LINE L1 3799 3850 -2998 3300 112 47 4 chr12 100266271 100266761 -44015728 + MER9 LTR ERVK 1 511 0 18888 63 25 25 chr12 100266761 100267523 -44014966 + HERVK9 LTR ERVK 1 762 -5154 210 217 0 83 chr12 100267523 100267583 -44014906 + MER5B DNA MER1_type 55 109 -69 18888 63 25 25 chr12 100267583 100269427 -44013062 + HERVK9 LTR ERVK 762 2664 -3252 547 127 0 0 chr12 100269424 100269503 -44012986 + HERVK9 LTR ERVK 5838 5916 0 * 3191 120 49 10 chr12 100269503 100269995 -44012494 + MER9 LTR ERVK 1 511 0 5421 163 29 9 chr12 100270006 100271160 -44011329 + L1M2 LINE L1 3868 5043 -1805 214 210 0 32 chr12 100271327 100271389 -44011100 + A-rich Low_complexity Low_complexity 1 60 0 258 207 0 0 chr12 100272303 100272361 -44010128 + A-rich Low_complexity Low_complexity 1 58 0 33 43 0 0 chr12 100272923 100272970 -44009519 + AT_rich Low_complexity Low_complexity 1 47 0 357 308 231 0 chr12 100273151 100273268 -44009221 - L2 LINE L2 0 3272 3129 512 235 113 14 chr12 100273291 100273456 -44009033 + MIR SINE MIR 2 191 -61 303 325 117 50 chr12 100273805 100274325 -44008164 - L2 LINE L2 -445 2869 2315 852 284 185 11 chr12 100275439 100275969 -44006520 + L2 LINE L2 2657 3289 -24 1663 185 3 7 chr12 100276194 100276486 -44006003 + AluJb SINE Alu 1 291 -21 2310 76 3 22 chr12 100279296 100279610 -44002879 + AluY SINE Alu 1 308 -3 2069 125 16 7 chr12 100279651 100279955 -44002534 - AluSx SINE Alu -1 311 5 195 42 0 0 chr12 100280673 100280697 -44001792 + (TG)n Simple_repeat Simple_repeat 2 25 0 1188 171 19 9 chr12 100281502 100281713 -44000776 + AluJo SINE Alu 96 308 -4 308 299 182 19 chr12 100282017 100282171 -44000318 - MIR3 SINE MIR -14 194 16 1788 194 22 41 chr12 100283981 100284398 -43998091 - MLT1C LTR MaLR 0 467 59 1692 219 68 20 chr12 100284394 100284983 -43997506 - MER21B LTR ERV1 -82 781 100 * 286 283 20 10 chr12 100285021 100285120 -43997369 - MER21B LTR ERV1 -763 100 1 270 220 0 0 chr12 100285393 100285443 -43997046 - AluJ/monomer SINE Alu -249 50 1 1672 172 161 8 chr12 100285520 100285881 -43996608 - MER47B DNA MER2_type -1 417 2 220 205 157 48 chr12 100287624 100287707 -43994782 + L2 LINE L2 3166 3257 -15 249 98 0 0 chr12 100288475 100288516 -43993973 + (A)n Simple_repeat Simple_repeat 1 41 0 225 329 12 12 chr12 100288625 100288707 -43993782 + MIR3 SINE MIR 121 202 -6 * 249 284 15 0 chr12 100288706 100288773 -43993716 - L2 LINE L2 -955 2359 2292 211 274 48 16 chr12 100288947 100289009 -43993480 + MIR3 SINE MIR 127 190 -18 291 282 184 0 chr12 100289108 100289211 -43993278 - MIR SINE MIR -14 248 127 204 219 37 73 chr12 100289272 100289354 -43993135 - L2 LINE L2 -1076 2238 2160 393 254 16 63 chr12 100289430 100289556 -43992933 - L2 LINE L2 0 3313 3194 244 203 0 85 chr12 100290017 100290076 -43992413 + MIR SINE MIR 1 54 -208 235 277 80 18 chr12 100290080 100290192 -43992297 - HAL1 LINE L1 -938 1569 1451 425 189 45 36 chr12 100290203 100290314 -43992175 - L1MD1 LINE L1 0 6242 6131 3157 245 58 47 chr12 100290314 100291691 -43990798 - L1MDa LINE L1 -2532 4008 2616 260 267 0 0 chr12 100291691 100291751 -43990738 - Tigger5 DNA MER2_type 0 2323 2264 496 202 10 48 chr12 100291773 100291877 -43990612 + Tigger5 DNA MER2_type 1 100 -2223 340 174 11 41 chr12 100291871 100291963 -43990526 - Tigger5 DNA MER2_type -5 2318 3 * 4537 188 128 3 chr12 100291965 100293208 -43989281 - L1MDa LINE L1 -3921 2619 1222 5317 224 104 50 chr12 100293350 100295270 -43987219 + L1MC4a LINE L1 5785 7808 0 691 186 8 0 chr12 100296376 100296494 -43985995 + FLAM_A SINE Alu 1 119 -14 2283 81 13 3 chr12 100296677 100296984 -43985505 + AluY SINE Alu 1 310 -1 1707 179 0 14 chr12 100297894 100298179 -43984310 - AluJo SINE Alu -31 281 1 1399 215 21 7 chr12 100298207 100298495 -43983994 + AluJo SINE Alu 1 292 -20 186 71 0 0 chr12 100299484 100299512 -43982977 + (A)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr12 100301787 100301810 -43980679 + AT_rich Low_complexity Low_complexity 1 23 0 219 313 0 0 chr12 100302923 100302990 -43979499 + L2 LINE L2 3246 3312 -1 602 165 0 28 chr12 100303264 100303373 -43979116 - FLAM_A SINE Alu -8 134 29 362 417 68 12 chr12 100304529 100305121 -43977368 - L2 LINE L2 -2474 840 216 2153 81 0 4 chr12 100305393 100305665 -43976824 - AluSp SINE Alu -4 309 39 465 264 45 0 chr12 100305680 100305790 -43976699 - L2 LINE L2 -7 3306 3192 874 213 10 19 chr12 100305791 100305998 -43976491 + MER3 DNA MER1_type 1 205 -4 2250 110 0 0 chr12 100306873 100307173 -43975316 - AluSx SINE Alu -12 300 1 235 191 32 16 chr12 100307277 100307340 -43975149 + GA-rich Low_complexity Low_complexity 5 68 0 444 225 58 43 chr12 100307357 100307495 -43974994 + MLT1K LTR MaLR 444 583 -5 23 0 0 0 chr12 100307591 100307614 -43974875 + AT_rich Low_complexity Low_complexity 1 23 0 223 391 103 25 chr12 100308093 100308206 -43974283 + L3b LINE CR1 1115 1218 -365 180 0 0 0 chr12 100308206 100308226 -43974263 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 223 391 103 25 chr12 100308226 100308547 -43973942 + L3b LINE CR1 1218 1583 0 25 31 0 0 chr12 100309033 100309065 -43973424 + AT_rich Low_complexity Low_complexity 1 32 0 2236 106 0 7 chr12 100309801 100310102 -43972387 - AluSg1 SINE Alu -10 299 1 22 35 0 0 chr12 100310250 100310279 -43972210 + AT_rich Low_complexity Low_complexity 1 29 0 202 364 0 76 chr12 100310549 100310681 -43971808 + MIR SINE MIR 16 137 -71 264 330 42 17 chr12 100312463 100312581 -43969908 - MIR SINE MIR -122 140 20 477 273 62 45 chr12 100312626 100312802 -43969687 - MIR SINE MIR -41 221 43 937 284 111 44 chr12 100312840 100313318 -43969171 - L2 LINE L2 0 3313 2804 519 269 7 14 chr12 100313328 100313473 -43969016 - L2 LINE L2 -662 2652 2509 24 32 0 0 chr12 100313637 100313668 -43968821 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr12 100313911 100313947 -43968542 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 28 chr12 100314500 100314511 -43967978 + AT_rich Low_complexity Low_complexity 1 11 -24 396 59 0 0 chr12 100314511 100314562 -43967927 + (CA)n Simple_repeat Simple_repeat 2 52 0 25 0 0 28 chr12 100314562 100314586 -43967903 + AT_rich Low_complexity Low_complexity 11 35 0 2294 232 27 50 chr12 100314729 100315341 -43967148 - L1MDa LINE L1 -5390 1153 536 748 248 0 0 chr12 100315338 100315495 -43966994 - L1M4 LINE L1 -2466 3680 3524 * 2417 239 88 16 chr12 100315492 100315614 -43966875 - L1MEc LINE L1 -5569 827 715 2018 149 11 17 chr12 100315614 100315963 -43966526 + MER7A DNA MER2_type 2 346 0 2417 239 88 16 chr12 100315963 100316579 -43965910 - L1MEc LINE L1 -5681 715 36 500 256 139 0 chr12 100316580 100316709 -43965780 + MIR SINE MIR 39 185 -77 5672 141 40 21 chr12 100316728 100317024 -43965465 + L1PA16 LINE L1 4772 5061 -1105 2003 153 0 61 chr12 100317024 100317383 -43965106 + MER1B DNA MER1_type 1 337 0 5672 141 40 21 chr12 100317383 100318441 -43964048 + L1PA16 LINE L1 5061 6157 -9 355 175 68 10 chr12 100318492 100318595 -43963894 + Zaphod DNA AcHobo 863 971 -3060 250 256 75 15 chr12 100318591 100318683 -43963806 + Zaphod DNA AcHobo 3585 3689 -342 * 2070 156 0 0 chr12 100318683 100318984 -43963505 + AluSx SINE Alu 1 301 -11 250 256 75 15 chr12 100318984 100319024 -43963465 + Zaphod DNA AcHobo 3689 3725 -306 222 288 45 0 chr12 100319194 100319260 -43963229 - MIR SINE MIR -1 261 193 9472 143 25 23 chr12 100319342 100321016 -43961473 + L1P LINE L1 11 1688 -4458 537 240 23 12 chr12 100321519 100321690 -43960799 + L1M3 LINE L1 1509 1681 -5168 2392 100 0 3 chr12 100321690 100321999 -43960490 + AluSq SINE Alu 1 308 -5 1342 68 23 0 chr12 100321999 100322175 -43960314 + HSMAR1 DNA Mariner 1108 1287 0 4718 202 138 13 chr12 100322175 100323637 -43958852 + L1M3 LINE L1 4556 6186 -687 1996 296 62 39 chr12 100323678 100324827 -43957662 + L1 LINE L1 21 2062 -5147 1953 131 27 10 chr12 100324827 100325128 -43957361 + AluSc SINE Alu 5 306 -3 442 192 42 78 chr12 100325128 100325300 -43957189 + L1 LINE L1 3984 4154 -3054 468 263 96 13 chr12 100325883 100326039 -43956450 - MIR SINE MIR -74 188 20 310 229 160 30 chr12 100328126 100328257 -43954232 - MIR SINE MIR -50 212 65 24 0 0 0 chr12 100329130 100329154 -43953335 + AT_rich Low_complexity Low_complexity 1 24 0 2358 100 0 0 chr12 100330883 100331182 -43951307 - AluSc SINE Alu -10 299 1 899 200 38 0 chr12 100331190 100331350 -43951139 - FRAM SINE Alu 0 166 1 845 204 0 12 chr12 100332649 100332811 -43949678 - FRAM SINE Alu -17 159 1 4636 159 48 38 chr12 100333064 100333917 -43948572 - MER21B LTR ERV1 -1 862 1 305 156 39 39 chr12 100333932 100334009 -43948480 + MER116 DNA Mariner 1 77 -3 1292 209 13 13 chr12 100334023 100334262 -43948227 - MER8 DNA MER2_type 0 239 1 778 297 38 10 chr12 100334960 100335253 -43947236 + LTR45B LTR ERV1 48 348 -141 525 240 116 0 chr12 100335384 100335513 -43946976 - L1ME LINE L1 -665 5497 5354 2475 74 3 7 chr12 100335624 100335934 -43946555 + AluY SINE Alu 1 309 -2 370 301 13 70 chr12 100335971 100336127 -43946362 + L2 LINE L2 2897 3043 -229 1309 237 144 31 chr12 100336381 100336833 -43945656 + MLT1D LTR MaLR 3 505 0 325 380 66 15 chr12 100338655 100338792 -43943697 - L2 LINE L2 -8 3264 3121 586 240 106 34 chr12 100339056 100339235 -43943254 + MLT1A2 LTR MaLR 183 374 0 1217 254 117 26 chr12 100339295 100339770 -43942719 + L1ME3A LINE L1 5611 6146 -18 2087 151 58 12 chr12 100339771 100340116 -43942373 + MER46B DNA MER2_type 1 236 0 1135 238 47 38 chr12 100340218 100340558 -43941931 - L1ME3 LINE L1 -42 6120 5778 661 133 83 0 chr12 100340572 100340692 -43941797 + L1MB7 LINE L1 5810 5939 -239 * 928 166 44 0 chr12 100340688 100340869 -43941620 + L1PA16 LINE L1 5957 6145 -21 1137 219 13 4 chr12 100340873 100341111 -43941378 + L1MB7 LINE L1 5922 6161 -23 1425 163 57 39 chr12 100341112 100341394 -43941095 + AluJb SINE Alu 1 287 -25 590 77 0 13 chr12 100343091 100343169 -43939320 - Alu SINE Alu -14 296 220 1560 202 1 128 chr12 100343187 100343203 -43939286 - MER39 LTR ERV1 -193 514 498 2244 101 7 10 chr12 100343203 100343509 -43938980 + AluSx SINE Alu 1 305 -7 1560 202 1 128 chr12 100343509 100344001 -43938488 - MER39 LTR ERV1 -209 498 190 410 116 163 47 chr12 100344000 100344086 -43938403 - MER21A LTR ERV1 -766 165 70 * 397 125 0 0 chr12 100344199 100344255 -43938234 - MER21A LTR ERV1 -863 68 13 782 205 88 13 chr12 100344287 100345104 -43937385 - L1ME LINE L1 -1003 5143 4232 453 243 47 79 chr12 100345121 100345335 -43937154 - L1 LINE L1 -3039 3107 2901 1701 187 24 24 chr12 100345359 100345690 -43936799 - MLT1B LTR MaLR 0 390 60 2933 6 0 12 chr12 100345762 100346084 -43936405 + AluYb8 SINE Alu 1 318 0 524 245 98 14 chr12 100346181 100346324 -43936165 - MER96 DNA MER1_type? 0 175 21 1837 102 54 29 chr12 100346559 100346873 -43935616 + MER11A LTR ERVK 945 1266 0 2222 112 3 13 chr12 100346924 100347236 -43935253 + AluSx SINE Alu 1 309 -3 396 232 134 9 chr12 100347300 100347412 -43935077 - L2 LINE L2 -467 2847 2722 372 257 73 9 chr12 100348060 100348169 -43934320 + L2 LINE L2 3196 3311 -2 229 250 33 0 chr12 100348353 100348413 -43934076 - MIR SINE MIR -29 233 172 35 54 0 0 chr12 100348998 100349054 -43933435 + AT_rich Low_complexity Low_complexity 1 56 0 542 128 59 10 chr12 100349339 100349441 -43933048 + L1MB4 LINE L1 6068 6174 -6 318 355 30 10 chr12 100349461 100349658 -43932831 + L1MC/D LINE L1 4583 4783 -1363 864 149 40 14 chr12 100349659 100349807 -43932682 + FRAM SINE Alu 18 169 -7 663 260 65 30 chr12 100349823 100350645 -43931844 + L1MC/D LINE L1 4777 5442 -743 1863 142 19 23 chr12 100350645 100350954 -43931535 + AluSx SINE Alu 1 308 -4 4984 130 11 0 chr12 100351470 100352184 -43930305 - HSMAR1 DNA Mariner -212 1075 354 342 100 175 0 chr12 100352316 100352396 -43930093 - L1MB3 LINE L1 0 6183 6090 506 294 8 0 chr12 100352543 100352662 -43929827 - L1ME1 LINE L1 -77 6089 5970 1925 227 61 22 chr12 100352665 100353312 -43929177 - L1ME1 LINE L1 -312 5854 5189 396 59 0 0 chr12 100353312 100353363 -43929126 + (TG)n Simple_repeat Simple_repeat 2 52 0 1433 163 0 0 chr12 100353380 100353607 -43928882 - AluJb SINE Alu -16 296 70 1041 229 67 12 chr12 100353609 100353862 -43928627 - MER21B LTR ERV1 -18 845 579 427 272 129 30 chr12 100354750 100354982 -43927507 - L2 LINE L2 -2 3270 3016 776 120 23 8 chr12 100355063 100355196 -43927293 + MLT1A1 LTR MaLR 1 135 -230 619 295 123 43 chr12 100355328 100355420 -43927069 - L2 LINE L2 -1532 1782 1699 1696 176 11 3 chr12 100355420 100355704 -43926785 + AluJo SINE Alu 6 291 -21 619 295 123 43 chr12 100355704 100356288 -43926201 - L2 LINE L2 -1615 1699 1052 13641 77 14 9 chr12 100356721 100358631 -43923858 + L1P LINE L1 1985 3903 -2243 4762 118 30 21 chr12 100358738 100358822 -43923667 + L1MA5 LINE L1 5526 5608 -692 1991 111 7 59 chr12 100358822 100359128 -43923361 + AluSx SINE Alu 1 290 -22 4762 118 30 21 chr12 100359128 100359803 -43922686 + L1MA5 LINE L1 5608 6292 -8 2057 197 96 13 chr12 100359810 100360151 -43922338 + L1MB2 LINE L1 5478 5882 -289 2219 117 3 0 chr12 100360151 100360450 -43922039 + AluSx SINE Alu 1 300 -12 2057 197 96 13 chr12 100360450 100360650 -43921839 + L1MB2 LINE L1 5882 6064 -107 24 32 0 0 chr12 100362219 100362250 -43920239 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chr12 100362253 100362291 -43920198 + (TA)n Simple_repeat Simple_repeat 1 39 0 440 165 13 0 chr12 100363292 100363371 -43919118 - MER116 DNA Mariner 0 80 1 419 289 132 6 chr12 100364396 100364555 -43917934 + MIR SINE MIR 79 257 -5 360 233 97 10 chr12 100365218 100365321 -43917168 + MIR SINE MIR 118 229 -33 274 316 30 38 chr12 100365492 100365625 -43916864 + L3b LINE CR1 1249 1380 -203 234 0 0 0 chr12 100365731 100365757 -43916732 + (T)n Simple_repeat Simple_repeat 1 26 0 586 231 118 12 chr12 100367630 100367799 -43914690 + MIR SINE MIR 6 192 -70 4237 80 52 68 chr12 100367931 100368261 -43914228 + LTR8 LTR ERV1 29 344 -347 2212 108 10 7 chr12 100368261 100368568 -43913921 - AluSx SINE Alu -4 308 1 4237 80 52 68 chr12 100368568 100368911 -43913578 + LTR8 LTR ERV1 344 691 0 373 360 101 19 chr12 100369038 100369346 -43913143 + L2 LINE L2 2939 3271 -1 238 182 45 164 chr12 100370535 100370645 -43911844 + Charlie8 DNA MER1_type 31 127 -2290 755 192 17 0 chr12 100370646 100370766 -43911723 + FLAM_C SINE Alu 2 123 -20 261 248 93 62 chr12 100370771 100370900 -43911589 + Charlie8 DNA MER1_type 103 235 -2182 2280 122 0 0 chr12 100371056 100371368 -43911121 - AluSx SINE Alu 0 312 1 212 114 0 45 chr12 100372626 100372670 -43909819 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 2375 82 0 7 chr12 100373356 100373650 -43908839 - AluSg SINE Alu -18 292 1 1103 133 0 20 chr12 100374217 100374412 -43908077 - LTR9B LTR ERV1 -84 560 370 368 252 9 18 chr12 100374447 100374558 -43907931 + MIR SINE MIR 118 227 -35 266 232 51 106 chr12 100374707 100374873 -43907616 + MIR SINE MIR 11 169 -61 1898 155 59 3 chr12 100374983 100375319 -43907170 + MLT1A1 LTR MaLR 1 362 -13 514 255 20 39 chr12 100375703 100375856 -43906633 - MIR SINE MIR -109 153 4 2891 6 0 6 chr12 100376481 100376794 -43905695 - AluYa5 SINE Alu 0 311 1 180 228 41 179 chr12 100377211 100377356 -43905133 + MIR3 SINE MIR 13 137 -71 721 228 105 9 chr12 100377399 100377627 -43904862 - MIR SINE MIR 0 262 13 1799 145 16 58 chr12 100378012 100378322 -43904167 - AluJb SINE Alu -11 301 5 181 327 0 0 chr12 100378836 100378891 -43903598 - L2 LINE L2 -215 3057 3003 643 261 87 0 chr12 100379167 100379368 -43903121 - MIR SINE MIR 0 262 37 358 206 14 0 chr12 100379581 100379654 -43902835 + MLT1J LTR MaLR 69 142 -369 518 100 14 0 chr12 100379671 100379741 -43902748 - AluJ/FLAM SINE Alu -239 73 3 397 236 73 44 chr12 100379894 100380195 -43902294 + MLT1J LTR MaLR 143 508 -3 412 293 91 14 chr12 100380630 100380838 -43901651 - MIR SINE MIR -19 243 20 865 204 99 5 chr12 100381948 100382149 -43900340 - MER58A DNA MER1_type -4 220 1 1964 141 20 7 chr12 100383472 100383778 -43898711 + AluSq SINE Alu 1 310 -3 221 250 0 0 chr12 100384503 100384547 -43897942 + polypurine Low_complexity Low_complexity 1 44 0 289 331 15 23 chr12 100385353 100385483 -43897006 - MER5B DNA MER1_type 0 178 50 716 218 42 42 chr12 100385554 100385770 -43896719 - MIR SINE MIR -34 228 13 273 367 13 6 chr12 100385786 100385944 -43896545 + MER5A DNA MER1_type 31 189 0 534 306 13 0 chr12 100388198 100388355 -43894134 - MER5A DNA MER1_type 0 189 31 909 198 47 35 chr12 100388365 100388597 -43893892 + MIR SINE MIR 7 241 -21 354 308 15 23 chr12 100388658 100388788 -43893701 + MER5B DNA MER1_type 50 178 0 223 323 55 43 chr12 100389404 100389568 -43892921 - MER5B DNA MER1_type -11 167 2 1744 164 10 10 chr12 100390627 100390920 -43891569 + AluJo SINE Alu 1 293 -19 2361 76 3 3 chr12 100392748 100393039 -43889450 + AluSx SINE Alu 2 292 -20 192 175 25 0 chr12 100393891 100393931 -43888558 - L2 LINE L2 -1 3312 3272 5402 170 21 5 chr12 100394408 100395877 -43886612 - L1MB2 LINE L1 -1 6170 4679 2231 169 28 12 chr12 100395884 100396316 -43886173 - L1MD1 LINE L1 -9 6233 5795 182 250 0 0 chr12 100396800 100396840 -43885649 - L2 LINE L2 -11 3261 3222 2261 91 0 7 chr12 100398109 100398394 -43884095 - AluSq SINE Alu -30 283 1 186 43 0 0 chr12 100398557 100398580 -43883909 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 270 241 319 17 chr12 100398831 100398947 -43883542 - MIR SINE MIR -111 151 1 1267 176 230 4 chr12 100401603 100401881 -43880608 - MER58B DNA MER1_type 0 341 1 244 333 73 52 chr12 100402697 100402889 -43879600 + L3 LINE CR1 1031 1226 -351 303 281 163 38 chr12 100405930 100406218 -43876271 - L1MC5 LINE L1 -36 7925 7602 3522 123 15 31 chr12 100407214 100407830 -43874659 - L1MA4 LINE L1 0 6300 5695 255 169 42 0 chr12 100407984 100408055 -43874434 + GA-rich Low_complexity Low_complexity 2 75 0 1127 159 72 5 chr12 100408098 100408306 -43874183 - MLT1B LTR MaLR 0 390 169 1130 69 14 0 chr12 100408308 100408452 -43874037 - AluSg/x SINE Alu -4 308 163 985 141 0 73 chr12 100408452 100408643 -43873846 - MLT1B LTR MaLR -213 177 1 361 281 38 38 chr12 100408769 100408929 -43873560 - MIR SINE MIR -60 202 43 209 200 100 25 chr12 100410380 100410460 -43872029 - MIR SINE MIR -93 169 84 1366 86 21 0 chr12 100410628 100410814 -43871675 + MER30B DNA MER1_type 1 190 0 207 314 81 12 chr12 100411283 100411369 -43871120 - L2 LINE L2 -19 3294 3203 927 116 0 22 chr12 100411404 100411542 -43870947 + FLAM_C SINE Alu 1 135 -8 217 311 14 14 chr12 100411859 100411933 -43870556 - L2 LINE L2 -527 2787 2714 28 0 0 0 chr12 100413069 100413097 -43869392 + AT_rich Low_complexity Low_complexity 1 28 0 678 181 0 0 chr12 100413100 100413216 -43869273 - FLAM_C SINE Alu -26 117 2 568 199 54 113 chr12 100413648 100413869 -43868620 - MIR SINE MIR 0 262 55 307 252 8 48 chr12 100415105 100415239 -43867250 + MIR SINE MIR 29 154 -57 1977 151 0 3 chr12 100415241 100415539 -43866950 - AluSx SINE Alu -15 297 1 579 203 73 0 chr12 100415571 100415694 -43866795 + AluJo SINE Alu 1 132 -170 777 229 69 43 chr12 100415796 100416331 -43866158 - L2 LINE L2 -58 3255 2707 235 275 35 70 chr12 100416386 100416528 -43865961 - MIR SINE MIR -118 144 8 2087 134 3 10 chr12 100416751 100417050 -43865439 + AluJo SINE Alu 2 298 -14 316 296 28 28 chr12 100417209 100417351 -43865138 - MIR3 SINE MIR -49 159 18 2349 94 0 7 chr12 100417722 100418031 -43864458 + AluSx SINE Alu 1 307 -5 805 237 0 0 chr12 100418299 100418455 -43864034 + AluJo SINE Alu 138 293 -9 745 254 77 74 chr12 100418534 100418857 -43863632 + MER102b DNA MER1_type 15 338 -3 2496 88 0 0 chr12 100418944 100419252 -43863237 + AluSc SINE Alu 1 308 -1 364 222 82 52 chr12 100419526 100419661 -43862828 - MER103 DNA DNA -1 165 27 1728 156 13 26 chr12 100419690 100419992 -43862497 - AluJb SINE Alu -14 298 1 514 261 96 0 chr12 100420071 100420228 -43862261 - MIR SINE MIR -46 216 45 198 0 0 0 chr12 100420695 100420717 -43861772 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 180 0 0 0 chr12 100422858 100422878 -43859611 + (A)n Simple_repeat Simple_repeat 1 20 0 1219 108 32 140 chr12 100423507 100423639 -43858850 + AluYb8 SINE Alu 3 148 -160 2076 119 3 10 chr12 100423639 100423950 -43858539 + AluY SINE Alu 1 309 -2 1219 108 32 140 chr12 100423950 100424160 -43858329 + AluYb8 SINE Alu 148 308 0 731 267 6 6 chr12 100424718 100424898 -43857591 - MIR SINE MIR -69 193 14 822 167 8 0 chr12 100425795 100425927 -43856562 + FLAM_C SINE Alu 1 133 0 1668 156 37 17 chr12 100426076 100426371 -43856118 - AluJo SINE Alu -11 301 1 21 0 0 0 chr12 100426520 100426541 -43855948 + AT_rich Low_complexity Low_complexity 1 21 0 202 344 31 0 chr12 100427403 100427467 -43855022 + MIR SINE MIR 13 78 -184 361 224 0 13 chr12 100428135 100428211 -43854278 + MER5A DNA MER1_type 74 148 -41 364 254 55 94 chr12 100428218 100428419 -43854070 + MIR3 SINE MIR 16 208 0 595 304 76 1 chr12 100428816 100429037 -43853452 - MIR SINE MIR 0 262 23 201 347 8 48 chr12 100429232 100429356 -43853133 - MER5A DNA MER1_type -35 154 36 6728 155 3 2 chr12 100431642 100432773 -43849716 - L1P LINE L1 -1498 4648 3517 860 263 22 19 chr12 100433102 100433372 -43849117 - AluJo SINE Alu -40 272 2 21 0 0 0 chr12 100433522 100433543 -43848946 + AT_rich Low_complexity Low_complexity 1 21 0 409 184 0 61 chr12 100435183 100435281 -43847208 + MER58B DNA MER1_type 250 341 0 439 248 94 54 chr12 100436018 100436167 -43846322 + AluJo SINE Alu 7 161 -151 527 203 16 31 chr12 100436267 100436395 -43846094 - LTR9B LTR ERV1 -149 495 370 324 299 0 0 chr12 100436441 100436538 -43845951 + MIR SINE MIR 127 223 -39 206 256 32 104 chr12 100436710 100436835 -43845654 + MIR SINE MIR 32 147 -61 1644 184 55 12 chr12 100436966 100437309 -43845180 + MLT1A1 LTR MaLR 1 358 -7 252 196 0 0 chr12 100437636 100437682 -43844807 - Charlie5 DNA MER1_type -2403 209 164 21 0 0 0 chr12 100440833 100440854 -43841635 + AT_rich Low_complexity Low_complexity 1 21 0 327 172 0 0 chr12 100441258 100441322 -43841167 + AluS SINE Alu 7 70 -233 950 322 8 8 chr12 100442337 100442697 -43839792 + MLT1A1 LTR MaLR 1 360 -5 21 0 0 0 chr12 100443744 100443765 -43838724 + AT_rich Low_complexity Low_complexity 1 21 0 633 287 11 17 chr12 100444290 100444471 -43838018 + MIR SINE MIR 14 193 -69 726 130 0 0 chr12 100445027 100445142 -43837347 - AluSg/x SINE Alu -8 301 187 * 797 78 0 0 chr12 100445136 100445239 -43837250 - AluSg/x SINE Alu -14 298 196 1351 146 0 12 chr12 100445239 100445479 -43837010 - AluY SINE Alu -2 309 73 1267 130 0 5 chr12 100445593 100445793 -43836696 - L1MA3 LINE L1 -412 5893 5695 255 169 42 0 chr12 100445947 100446018 -43836471 + GA-rich Low_complexity Low_complexity 2 75 0 1122 164 72 5 chr12 100446061 100446269 -43836220 - MLT1B LTR MaLR 0 390 169 960 111 14 0 chr12 100446271 100446415 -43836074 - AluSg/x SINE Alu -4 306 161 755 189 24 18 chr12 100446415 100446579 -43835910 - MLT1B LTR MaLR -213 177 13 343 250 38 53 chr12 100446730 100446862 -43835627 - MIR SINE MIR -58 204 75 1201 244 0 14 chr12 100449357 100449644 -43832845 + AluSc SINE Alu 3 285 -14 269 345 131 7 chr12 100450838 100450983 -43831506 + MIR SINE MIR 79 241 -21 22 0 0 0 chr12 100452303 100452325 -43830164 + AT_rich Low_complexity Low_complexity 1 22 0 194 243 0 0 chr12 100452649 100452686 -43829803 - MIR SINE MIR -5 257 221 292 308 13 0 chr12 100452717 100452795 -43829694 + L2 LINE L2 3229 3307 -6 860 144 0 75 chr12 100453174 100453252 -43829237 + MLT1D LTR MaLR 5 64 -441 1780 176 7 89 chr12 100453252 100453679 -43828810 - MSTD LTR MaLR -1 395 4 860 144 0 75 chr12 100453679 100453774 -43828715 + MLT1D LTR MaLR 64 165 -340 854 288 66 4 chr12 100453784 100454027 -43828462 + MLT1D LTR MaLR 248 505 0 207 293 17 0 chr12 100454043 100454101 -43828388 + MIR SINE MIR 132 190 -72 2014 187 34 14 chr12 100454295 100454712 -43827777 - MSTB LTR MaLR 0 426 2 224 304 65 65 chr12 100455672 100455764 -43826725 + L2 LINE L2 2666 2757 -557 205 244 12 61 chr12 100455949 100456031 -43826458 + MIR SINE MIR 185 262 0 1977 151 70 22 chr12 100456084 100456455 -43826034 - MLT1B LTR MaLR -1 389 1 299 296 153 5 chr12 100456497 100456700 -43825789 - MIR SINE MIR -5 257 25 844 217 0 0 chr12 100457168 100457357 -43825132 + AluSq SINE Alu 7 195 -118 391 157 43 0 chr12 100458754 100458824 -43823665 + AluS SINE Alu 230 302 0 259 333 0 0 chr12 100458865 100458973 -43823516 - L1MC/D LINE L1 -1933 5875 5768 554 0 15 0 chr12 100460016 100460082 -43822407 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 359 230 120 0 chr12 100461939 100462039 -43820450 + MIR SINE MIR 118 229 -33 255 294 64 87 chr12 100462210 100462428 -43820061 + L3b LINE CR1 1249 1461 -122 225 0 0 0 chr12 100462451 100462476 -43820013 + (T)n Simple_repeat Simple_repeat 1 25 0 185 347 109 38 chr12 100464081 100464346 -43818143 + L2 LINE L2 2565 2848 -466 465 251 118 21 chr12 100464353 100464540 -43817949 + MIR SINE MIR 6 210 -52 804 179 103 0 chr12 100464662 100464818 -43817671 + LTR8 LTR ERV1 38 209 -482 197 362 106 34 chr12 100465125 100465390 -43817099 + L2 LINE L2 2565 2848 -466 610 231 118 12 chr12 100465397 100465566 -43816923 + MIR SINE MIR 6 192 -70 3875 102 50 71 chr12 100465698 100466030 -43816459 + LTR8 LTR ERV1 29 341 -350 1832 148 3 0 chr12 100466030 100466335 -43816154 - AluSx SINE Alu -6 306 1 3875 102 50 71 chr12 100466335 100466679 -43815810 + LTR8 LTR ERV1 341 691 0 381 370 97 16 chr12 100466806 100467114 -43815375 + L2 LINE L2 2939 3271 -1 507 234 0 0 chr12 100468428 100468535 -43813954 + FLAM_C SINE Alu 15 121 -22 252 251 95 111 chr12 100468540 100468783 -43813706 + MER102a DNA MER1_type 92 330 0 1572 165 3 19 chr12 100468825 100469134 -43813355 - AluSx SINE Alu -4 308 5 546 43 0 0 chr12 100471196 100471265 -43811224 + (TG)n Simple_repeat Simple_repeat 1 69 0 329 207 98 0 chr12 100471355 100471437 -43811052 - MER91C DNA MER1_type -27 113 24 418 298 44 44 chr12 100471804 100471985 -43810504 + MIR SINE MIR 35 215 -47 2064 110 20 0 chr12 100472544 100472843 -43809646 - AluSg SINE Alu -5 305 1 475 240 80 46 chr12 100472911 100473086 -43809403 - MER20B DNA MER1_type -602 181 1 1031 289 98 42 chr12 100473180 100473979 -43808510 + L2 LINE L2 2456 3313 0 484 355 201 7 chr12 100473994 100474402 -43808087 - L3 LINE CR1 -115 1462 976 205 386 10 10 chr12 100474444 100474545 -43807944 + MIR SINE MIR 20 120 -142 397 214 27 27 chr12 100474815 100474927 -43807562 + MLT1L LTR MaLR 151 262 -353 13651 48 3 14 chr12 100476327 100479184 -43803305 - L1PA5 LINE L1 0 6154 3329 346 307 104 55 chr12 100479230 100479595 -43802894 - L2 LINE L2 -796 2518 2136 524 96 0 11 chr12 100479663 100479757 -43802732 + (TC)n Simple_repeat Simple_repeat 2 94 0 519 126 0 22 chr12 100480324 100480459 -43802030 + (TC)n Simple_repeat Simple_repeat 1 132 0 237 342 103 16 chr12 100480511 100480695 -43801794 - MLT1K LTR MaLR -271 317 118 22 0 0 0 chr12 100481893 100481915 -43800574 + AT_rich Low_complexity Low_complexity 1 22 0 186 268 0 0 chr12 100482239 100482280 -43800209 - MIR SINE MIR -6 256 216 317 295 13 0 chr12 100482306 100482384 -43800105 + L2 LINE L2 3229 3307 -6 504 359 6 0 chr12 100482831 100482987 -43799502 - L2 LINE L2 -219 3053 2897 204 356 0 0 chr12 100483030 100483089 -43799400 + L2 LINE L2 3244 3302 -11 2285 95 0 30 chr12 100483374 100483678 -43798811 - AluSx SINE Alu -17 295 1 2435 95 7 0 chr12 100484500 100484805 -43797684 - AluSx SINE Alu -3 309 3 432 271 117 3 chr12 100485263 100485472 -43797017 + MIR SINE MIR 21 257 -5 2315 122 70 19 chr12 100485514 100485884 -43796605 + MLT1B LTR MaLR 1 389 -1 695 263 101 19 chr12 100485937 100486146 -43796343 - MIR SINE MIR 0 262 37 706 271 85 0 chr12 100486147 100486324 -43796165 - MER91A DNA MER1_type -2 194 3 1251 263 111 21 chr12 100489746 100490222 -43792267 - LTR33 LTR ERVL -2 519 1 471 220 0 8 chr12 100490270 100490388 -43792101 + L1MA10 LINE L1 6218 6334 0 774 50 0 0 chr12 100491430 100491529 -43790960 + (CTATG)n Simple_repeat Simple_repeat 1 99 0 192 77 0 0 chr12 100492330 100492356 -43790133 + (A)n Simple_repeat Simple_repeat 1 26 0 186 43 0 0 chr12 100492667 100492690 -43789799 + (T)n Simple_repeat Simple_repeat 1 23 0 248 333 0 0 chr12 100493826 100493934 -43788555 + L1MC/D LINE L1 5768 5875 -1933 2187 93 10 30 chr12 100493983 100494283 -43788206 - AluSx SINE Alu -18 294 1 1981 125 43 0 chr12 100494291 100494570 -43787919 - AluSx SINE Alu -21 291 1 285 212 71 12 chr12 100494703 100494788 -43787701 - MER103 DNA DNA -35 131 42 246 237 412 0 chr12 100494844 100494958 -43787531 - MIR SINE MIR -3 259 99 205 232 18 54 chr12 100495774 100495830 -43786659 - MER5A DNA MER1_type -11 178 125 623 169 102 25 chr12 100495830 100495948 -43786541 + FLAM_C SINE Alu 1 127 -6 312 353 29 7 chr12 100495961 100496097 -43786392 - MER5A DNA MER1_type -50 139 1 200 167 0 0 chr12 100497029 100497059 -43785430 + polypurine Low_complexity Low_complexity 1 30 0 235 196 0 0 chr12 100497602 100497648 -43784841 + Charlie5 DNA MER1_type 164 209 -2403 228 250 0 0 chr12 100497605 100497661 -43784828 - MER3 DNA MER1_type -119 90 35 * 4373 259 123 38 chr12 100497661 100498172 -43784317 - L2 LINE L2 -1049 2265 1799 2362 100 0 3 chr12 100498172 100498481 -43784008 - AluSx SINE Alu -4 308 1 4373 259 123 38 chr12 100498481 100499254 -43783235 - L2 LINE L2 -1515 1799 1093 1865 185 0 3 chr12 100499254 100499551 -43782938 + AluJb SINE Alu 1 296 -16 4373 259 123 38 chr12 100499551 100500102 -43782387 - L2 LINE L2 -2221 1093 272 1872 167 7 3 chr12 100500104 100500398 -43782091 - AluJb SINE Alu -17 295 1 911 297 88 19 chr12 100500403 100500868 -43781621 + L2 LINE L2 2640 3142 -171 2132 104 50 0 chr12 100501359 100501638 -43780851 + AluSx SINE Alu 1 293 -19 282 404 7 20 chr12 100502006 100502157 -43780332 - L2 LINE L2 -2 3270 3122 330 298 167 0 chr12 100502177 100502291 -43780198 - L2 LINE L2 -3 3310 3178 340 148 28 93 chr12 100502292 100502400 -43780089 - MLT1I LTR MaLR 0 409 309 343 226 9 38 chr12 100502581 100502687 -43779802 - MLT1H LTR MaLR -387 162 60 398 269 117 29 chr12 100502824 100502995 -43779494 - L2 LINE L2 -181 3091 2906 515 355 57 0 chr12 100503021 100503300 -43779189 - L2 LINE L2 -527 2787 2493 3009 99 24 12 chr12 100503780 100504203 -43778286 - MSTA LTR MaLR 0 428 1 1931 124 0 0 chr12 100504362 100504619 -43777870 + AluJb SINE Alu 34 290 -22 325 222 44 22 chr12 100504619 100504709 -43777780 + MIR SINE MIR 147 238 -24 314 266 92 35 chr12 100504737 100504910 -43777579 - L2 LINE L2 -181 3091 2909 254 283 65 65 chr12 100504998 100505090 -43777399 - L2 LINE L2 -557 2757 2666 2470 144 34 14 chr12 100506049 100506466 -43776023 + MSTB LTR MaLR 2 426 0 236 356 58 29 chr12 100506612 100506716 -43775773 - MIR SINE MIR -24 238 132 1298 155 41 21 chr12 100506732 100507077 -43775412 - MLT1D LTR MaLR 0 505 76 2247 138 9 91 chr12 100507077 100507506 -43774983 + MSTD LTR MaLR 3 396 0 1298 155 41 21 chr12 100507506 100507583 -43774906 - MLT1D LTR MaLR -429 76 2 843 262 22 71 chr12 100507821 100507919 -43774570 - L2 LINE L2 0 3313 3212 2984 74 103 28 chr12 100507919 100508376 -43774113 + L1PA10 LINE L1 5678 6168 0 843 262 22 71 chr12 100508376 100508410 -43774079 - L2 LINE L2 -101 3212 3178 1345 192 166 43 chr12 100508410 100508826 -43773663 - MLT1C LTR MaLR 0 467 1 843 262 22 71 chr12 100508826 100509016 -43773473 - L2 LINE L2 -135 3178 3006 2150 111 0 14 chr12 100509632 100509950 -43772539 - AluSc SINE Alu 0 314 1 407 276 16 16 chr12 100510401 100510528 -43771961 - MIR SINE MIR -105 157 31 320 310 88 9 chr12 100510876 100510989 -43771500 - L2 LINE L2 -8 3264 3143 438 254 162 6 chr12 100511300 100511473 -43771016 - MIR SINE MIR 0 262 63 400 328 67 71 chr12 100511470 100511614 -43770875 + L2 LINE L2 2847 2990 -323 * 1591 189 38 3 chr12 100511614 100511905 -43770584 - AluSx SINE Alu 0 312 12 400 328 67 71 chr12 100511905 100512226 -43770263 + L2 LINE L2 2990 3310 -3 701 290 31 22 chr12 100514170 100514394 -43768095 + MIR SINE MIR 29 254 -8 28 0 0 0 chr12 100514902 100514930 -43767559 + GC_rich Low_complexity Low_complexity 1 28 0 265 296 23 0 chr12 100515016 100515104 -43767385 + G-rich Low_complexity Low_complexity 1 90 0 261 232 14 0 chr12 100515157 100515226 -43767263 + C-rich Low_complexity Low_complexity 3 72 0 181 136 0 68 chr12 100515427 100515486 -43767003 + (CCG)n Simple_repeat Simple_repeat 3 57 0 27 0 0 0 chr12 100515538 100515565 -43766924 + GC_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chr12 100515796 100515824 -43766665 + GC_rich Low_complexity Low_complexity 1 28 0 223 211 0 53 chr12 100518892 100518949 -43763540 - L2 LINE L2 -8 3264 3211 383 258 120 33 chr12 100519606 100519793 -43762696 - MIR SINE MIR -51 211 17 652 318 68 13 chr12 100520647 100520883 -43761606 - MIR SINE MIR 0 262 14 271 354 100 0 chr12 100520967 100521097 -43761392 - MIR SINE MIR -22 240 98 385 281 0 0 chr12 100521392 100521474 -43761015 + L2 LINE L2 3232 3313 0 1060 171 5 31 chr12 100521802 100521995 -43760494 + MER5A DNA MER1_type 1 188 -1 604 305 75 9 chr12 100522534 100522747 -43759742 + MIR SINE MIR 15 241 -21 1236 136 0 0 chr12 100523026 100523195 -43759294 - AluSg/x SINE Alu -12 298 130 1740 166 45 24 chr12 100523249 100523538 -43758951 - AluJo SINE Alu -5 307 13 1876 185 27 9 chr12 100524279 100524614 -43757875 - MER58B DNA MER1_type 0 341 1 338 284 136 6 chr12 100524700 100524862 -43757627 - L2 LINE L2 -180 3092 2910 249 175 4 28 chr12 100525061 100525328 -43757161 + AluJo SINE Alu 1 308 -12 249 294 59 12 chr12 100525621 100525706 -43756783 - L2 LINE L2 -2 3270 3182 573 273 28 0 chr12 100525745 100525888 -43756601 - MIR SINE MIR -1 261 115 636 294 149 39 chr12 100525933 100526649 -43755840 - L2 LINE L2 -218 3054 2262 216 364 33 33 chr12 100526700 100526821 -43755668 + L2 LINE L2 3143 3263 -9 1616 203 84 5 chr12 100527271 100527685 -43754804 - Charlie4a DNA MER1_type -43 465 19 507 60 0 0 chr12 100528154 100528221 -43754268 + (CA)n Simple_repeat Simple_repeat 1 67 0 767 280 127 60 chr12 100529123 100529644 -43752845 - MLT1L LTR MaLR -16 599 44 734 216 89 81 chr12 100529689 100529948 -43752541 - MIR SINE MIR 0 262 2 423 56 0 0 chr12 100530015 100530069 -43752420 + (TTA)n Simple_repeat Simple_repeat 3 56 0 1530 154 12 4 chr12 100530263 100530509 -43751980 - AluJo SINE Alu -18 294 47 23 0 0 0 chr12 100532598 100532621 -43749868 + AT_rich Low_complexity Low_complexity 1 23 0 412 290 22 29 chr12 100533664 100533802 -43748687 + MIR3 SINE MIR 67 203 -5 190 310 220 0 chr12 100534125 100534225 -43748264 + L2 LINE L2 3169 3290 -23 653 272 118 9 chr12 100534866 100535094 -43747395 - MIR SINE MIR -8 254 2 317 313 31 8 chr12 100535962 100536090 -43746399 - L1ME4a LINE L1 -2 6119 5989 228 254 90 0 chr12 100536436 100536503 -43745986 - MIR3 SINE MIR -5 203 131 505 278 86 6 chr12 100536953 100537115 -43745374 - MIR SINE MIR 0 262 88 1957 148 23 0 chr12 100537664 100537967 -43744522 - AluJb SINE Alu -1 311 2 225 313 0 0 chr12 100538578 100538690 -43743799 + (TG)n Simple_repeat Simple_repeat 1 112 0 775 224 137 43 chr12 100539210 100539509 -43742980 - L2 LINE L2 -5 3308 2982 209 246 70 0 chr12 100539956 100540013 -43742476 - L3b LINE CR1 -229 1354 1294 28 29 0 0 chr12 100540067 100540102 -43742387 + AT_rich Low_complexity Low_complexity 1 35 0 182 217 14 0 chr12 100540297 100540366 -43742123 + (TA)n Simple_repeat Simple_repeat 2 71 0 591 196 101 6 chr12 100540387 100540545 -43741944 - L1MC4a LINE L1 -1971 5837 5665 435 193 0 0 chr12 100540545 100540633 -43741856 + (TG)n Simple_repeat Simple_repeat 2 89 0 243 109 0 0 chr12 100540633 100540679 -43741810 + LTR66 LTR ERVL 394 439 -171 235 109 0 0 chr12 100540703 100540749 -43741740 + LTR66 LTR ERVL 394 439 -171 347 225 14 0 chr12 100540757 100540828 -43741661 - L1MC4a LINE L1 -2178 5630 5559 456 215 13 27 chr12 100540972 100541121 -43741368 + GA-rich Low_complexity Low_complexity 2 148 0 868 256 68 56 chr12 100541342 100541846 -43740643 - L1MC5 LINE L1 -183 7778 7269 902 194 99 5 chr12 100542124 100542315 -43740174 + MER3 DNA MER1_type 1 209 0 2439 89 0 0 chr12 100542949 100543252 -43739237 + AluSx SINE Alu 1 303 -9 605 262 102 11 chr12 100543301 100543488 -43739001 - MIR SINE MIR -13 249 46 473 317 178 26 chr12 100543588 100544089 -43738400 + L2 LINE L2 2725 3308 -5 2022 117 35 0 chr12 100544608 100544891 -43737598 + AluSc SINE Alu 1 293 -16 21 36 0 0 chr12 100545560 100545588 -43736901 + AT_rich Low_complexity Low_complexity 1 28 0 1118 158 0 0 chr12 100545763 100545934 -43736555 + FRAM SINE Alu 2 172 -4 792 181 21 14 chr12 100545935 100546079 -43736410 + AluSq/x SINE Alu 2 146 -166 536 340 47 53 chr12 100546261 100546408 -43736081 + L2 LINE L2 2844 2990 -323 2087 103 38 3 chr12 100546408 100546699 -43735790 - AluSx SINE Alu 0 312 12 536 340 47 53 chr12 100546699 100547021 -43735468 + L2 LINE L2 2990 3310 -3 417 316 100 66 chr12 100547019 100547339 -43735150 - L2 LINE L2 -40 3232 2902 * 242 304 68 19 chr12 100547579 100547740 -43734749 - L2 LINE L2 -553 2761 2593 563 233 17 0 chr12 100547954 100548074 -43734415 - MER103 DNA DNA -43 123 2 443 264 14 29 chr12 100548285 100548425 -43734064 + MIR SINE MIR 96 233 -29 2026 169 77 29 chr12 100548437 100548815 -43733674 + MSTD LTR MaLR 1 396 0 664 285 41 14 chr12 100548849 100549070 -43733419 + MIR SINE MIR 2 228 -34 364 223 208 66 chr12 100550525 100550722 -43731767 + MIR SINE MIR 12 236 -26 22 0 0 0 chr12 100551878 100551900 -43730589 + AT_rich Low_complexity Low_complexity 1 22 0 265 311 38 38 chr12 100552166 100552298 -43730191 - L2 LINE L2 0 3272 3141 447 258 42 0 chr12 100554486 100554606 -43727883 - L2 LINE L2 -3 3310 3186 259 277 64 57 chr12 100556321 100556462 -43726027 + L1MC4a LINE L1 5770 5911 -1897 2767 20 0 0 chr12 100556644 100556950 -43725539 + AluYa5 SINE Alu 1 306 -5 7514 48 2 2 chr12 100556978 100557359 -43725130 - L1PA6 LINE L1 -1 6153 5773 2651 61 0 0 chr12 100557359 100557670 -43724819 - AluY SINE Alu 0 311 1 7514 48 2 2 chr12 100557670 100558521 -43723968 - L1PA6 LINE L1 -380 5774 4938 1361 84 0 0 chr12 100558521 100558687 -43723802 - AluSg/x SINE Alu -15 297 132 1964 147 7 7 chr12 100558741 100559034 -43723455 - AluJo SINE Alu -15 297 5 22 35 0 0 chr12 100559152 100559181 -43723308 + AT_rich Low_complexity Low_complexity 1 29 0 2449 68 0 3 chr12 100559553 100559849 -43722640 - AluSq SINE Alu -18 295 1 214 162 0 0 chr12 100559891 100559928 -43722561 + A-rich Low_complexity Low_complexity 2 38 0 468 257 123 51 chr12 100560054 100560202 -43722287 + L1ME LINE L1 4602 4738 -1408 338 0 24 0 chr12 100560202 100560244 -43722245 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 468 257 123 51 chr12 100560244 100560484 -43722005 + L1ME LINE L1 4738 5018 -1128 2128 114 3 10 chr12 100560635 100560932 -43721557 + AluSq SINE Alu 1 295 -18 325 255 61 40 chr12 100560978 100561200 -43721289 + L1P5 LINE L1 5256 5447 -704 * 661 304 52 11 chr12 100561173 100561443 -43721046 + L1ME LINE L1 5530 5810 -311 1225 291 98 24 chr12 100561710 100562283 -43720206 + L2 LINE L2 1826 2440 -874 471 307 16 0 chr12 100562459 100562586 -43719903 + L2 LINE L2 3185 3313 0 186 254 0 0 chr12 100563350 100563417 -43719072 + (CA)n Simple_repeat Simple_repeat 2 68 0 610 314 100 41 chr12 100563613 100564415 -43718074 + L1ME1 LINE L1 4497 5357 -789 417 81 0 0 chr12 100564438 100564500 -43717989 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 626 321 90 67 chr12 100565196 100565818 -43716671 - L2 LINE L2 0 3272 2638 514 204 68 53 chr12 100565778 100565910 -43716579 + L2 LINE L2 3180 3313 0 * 2208 192 3 3 chr12 100566251 100566616 -43715873 - MLT1A1 LTR MaLR 0 365 1 979 83 0 0 chr12 100567783 100567904 -43714585 + AluSq/x SINE Alu 1 121 -192 219 69 0 0 chr12 100567904 100567933 -43714556 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 409 347 35 23 chr12 100568041 100568214 -43714275 + MER5A DNA MER1_type 3 188 -1 1906 152 0 0 chr12 100668907 100669184 -43613305 - AluSq SINE Alu -36 277 1 632 118 0 0 chr12 100669222 100669307 -43613182 - AluJ/FLAM SINE Alu -223 89 5 1972 214 16 9 chr12 100669308 100669519 -43612970 + L1ME1 LINE L1 5514 5722 -444 2252 120 48 31 chr12 100669519 100669877 -43612612 - THE1B LTR MaLR 0 364 1 1972 214 16 9 chr12 100669877 100670095 -43612394 + L1ME1 LINE L1 5722 5946 -220 2245 96 0 10 chr12 100670476 100670768 -43611721 + AluSq SINE Alu 19 307 -6 1968 99 55 11 chr12 100670865 100671163 -43611326 + AluSx SINE Alu 1 310 0 1300 105 0 0 chr12 100671163 100671335 -43611154 + AluSg/x SINE Alu 120 291 -21 255 233 0 0 chr12 100671335 100671378 -43611111 + L1ME2 LINE L1 5480 5522 -644 2018 204 57 24 chr12 100671394 100671888 -43610601 + L1ME2 LINE L1 5653 6162 -2 2653 55 0 0 chr12 100672200 100672511 -43609978 + AluY SINE Alu 1 311 0 1474 166 80 48 chr12 100672523 100672812 -43609677 + AluJo SINE Alu 1 298 -14 251 337 22 0 chr12 100672825 100672917 -43609572 - MIR SINE MIR -121 141 48 213 39 0 0 chr12 100672971 100672997 -43609492 + (TG)n Simple_repeat Simple_repeat 1 26 0 2104 120 0 0 chr12 100673377 100673675 -43608814 + AluSq SINE Alu 12 309 0 1490 181 92 0 chr12 100673923 100674183 -43608306 + AluJo SINE Alu 1 284 -28 6269 189 94 52 chr12 100674296 100676045 -43606444 + L1MDa LINE L1 16 1690 -4850 2358 99 0 7 chr12 100676045 100676348 -43606141 + AluSg SINE Alu 1 301 -9 6269 189 94 52 chr12 100676348 100676560 -43605929 + L1MDa LINE L1 1690 1892 -4648 1809 152 41 3 chr12 100676560 100676850 -43605639 + AluJb SINE Alu 1 301 -11 6269 189 94 52 chr12 100676850 100676896 -43605593 + L1MDa LINE L1 1892 2271 -4269 235 305 21 21 chr12 100677001 100677096 -43605393 + L1MC/D LINE L1 5670 5764 -2044 2156 121 0 3 chr12 100677184 100677481 -43605008 - AluSx SINE Alu -16 296 1 2180 132 0 3 chr12 100678028 100678331 -43604158 - AluSq SINE Alu -11 302 1 269 307 5 116 chr12 100678481 100678556 -43603933 - MIR SINE MIR -67 195 113 2399 91 0 0 chr12 100678556 100678853 -43603636 - AluSc SINE Alu -12 297 1 269 307 5 116 chr12 100678853 100678966 -43603523 - MIR SINE MIR -149 113 28 411 228 29 73 chr12 100679071 100679207 -43603282 - L2 LINE L2 0 3272 3143 457 278 74 0 chr12 100680605 100680767 -43601722 - MER102b DNA MER1_type -3 338 165 1991 198 8 3 chr12 100680817 100681180 -43601309 - MLT1A1 LTR MaLR 0 365 1 1881 121 0 11 chr12 100681211 100681476 -43601013 - AluSx SINE Alu -14 298 37 439 312 29 0 chr12 100681559 100681697 -43600792 - MIR SINE MIR 0 262 121 246 150 50 0 chr12 100681697 100681737 -43600752 + MER57A LTR ERV1 295 336 -67 198 350 12 0 chr12 100681792 100681872 -43600617 - MIR SINE MIR -71 137 57 714 241 51 46 chr12 100682021 100682216 -43600273 + MER58A DNA MER1_type 28 223 -1 2182 122 3 0 chr12 100682301 100682604 -43599885 + AluSx SINE Alu 1 304 -8 2017 155 0 0 chr12 100682615 100682911 -43599578 + AluSx SINE Alu 1 296 -16 2351 100 3 0 chr12 100683012 100683313 -43599176 + AluSx SINE Alu 1 302 -10 403 195 13 0 chr12 100684073 100684150 -43598339 + L1M4 LINE L1 4487 4564 -1582 275 299 175 26 chr12 100684299 100684567 -43597922 + L2 LINE L2 2842 3149 -164 298 289 61 18 chr12 100684567 100684652 -43597837 - MER94 DNA DNA -15 119 26 1955 141 7 0 chr12 100684652 100684942 -43597547 + AluJb SINE Alu 1 292 -20 298 289 61 18 chr12 100684942 100684970 -43597519 - MER94 DNA DNA -108 26 1 305 244 111 59 chr12 100684987 100685122 -43597367 + L2 LINE L2 3159 3300 -13 892 105 13 0 chr12 100685122 100685274 -43597215 + (GGAA)n Simple_repeat Simple_repeat 1 154 0 328 267 152 0 chr12 100686304 100686409 -43596080 - L2 LINE L2 0 3313 3193 1008 218 0 0 chr12 100686500 100686693 -43595796 + MIR SINE MIR 46 238 -24 259 216 135 14 chr12 100686815 100686889 -43595600 + HAL1 LINE L1 614 696 -1811 2501 107 21 47 chr12 100686889 100687274 -43595215 + THE1C LTR MaLR 1 375 0 269 238 163 75 chr12 100687462 100687744 -43594745 + HAL1 LINE L1 817 1123 -1384 345 100 0 0 chr12 100687752 100687802 -43594687 + (CA)n Simple_repeat Simple_repeat 1 50 0 1495 156 4 4 chr12 100688360 100688591 -43593898 + AluJo SINE Alu 1 231 -81 300 27 0 0 chr12 100688594 100688631 -43593858 + (TAA)n Simple_repeat Simple_repeat 3 39 0 325 291 133 0 chr12 100688634 100688792 -43593697 + HAL1 LINE L1 1169 1347 -1160 497 307 16 0 chr12 100688851 100689040 -43593449 + L1M4 LINE L1 4941 5132 -1014 1941 154 0 26 chr12 100689044 100689180 -43593309 + AluJb SINE Alu 1 139 -173 1874 122 80 0 chr12 100689180 100689467 -43593022 + AluSq SINE Alu 1 310 -3 1941 154 0 26 chr12 100689467 100689642 -43592847 + AluJb SINE Alu 139 304 -8 2462 169 57 0 chr12 100689702 100690105 -43592384 + MSTB LTR MaLR 1 426 0 308 214 96 19 chr12 100690129 100690234 -43592255 + MLT1J LTR MaLR 21 171 -319 273 173 86 25 chr12 100690533 100690614 -43591875 + AluJo SINE Alu 208 293 -9 579 225 47 18 chr12 100690874 100691043 -43591446 + MIR SINE MIR 86 259 -3 6209 102 4 0 chr12 100691311 100691685 -43590804 - L1PB1 LINE L1 -3 6864 6493 252 0 0 0 chr12 100691685 100691713 -43590776 + (CA)n Simple_repeat Simple_repeat 2 29 0 6209 102 4 0 chr12 100691713 100692603 -43589886 - L1PA5 LINE L1 -374 6493 5605 3035 53 8 0 chr12 100692603 100692957 -43589532 + L1PA5 LINE L1 6508 6866 -4 13375 190 70 12 chr12 100692972 100698260 -43584229 - L1PB1 LINE L1 -1241 5621 29 221 382 24 0 chr12 100698384 100698507 -43583982 - L3b LINE CR1 -326 1257 1132 234 291 18 18 chr12 100698601 100698711 -43583778 - L1MDa LINE L1 -2891 3649 3540 * 384 302 65 12 chr12 100698691 100698860 -43583629 - L1ME1 LINE L1 -2 6164 5987 2247 81 3 20 chr12 100699209 100699507 -43582982 - AluSc SINE Alu -16 293 1 226 210 51 138 chr12 100699837 100699975 -43582514 + MIR SINE MIR 15 140 -122 695 296 35 5 chr12 100700030 100700229 -43582260 - MIR SINE MIR -25 237 33 836 157 0 8 chr12 100700241 100700375 -43582114 + FLAM_C SINE Alu 11 143 0 22 35 0 0 chr12 100700409 100700438 -43582051 + AT_rich Low_complexity Low_complexity 1 29 0 835 184 0 0 chr12 100700547 100700672 -43581817 + FLAM_C SINE Alu 3 127 -16 227 298 64 0 chr12 100700816 100700910 -43581579 + MIR SINE MIR 148 247 -15 913 242 24 0 chr12 100701332 100701543 -43580946 + MIR SINE MIR 37 252 -10 1394 188 149 0 chr12 100701942 100702230 -43580259 + MLT1B LTR MaLR 60 390 0 2232 108 3 0 chr12 100702766 100703062 -43579427 - AluSq SINE Alu -16 297 1 2206 111 0 13 chr12 100703487 100703785 -43578704 - AluSq SINE Alu -18 295 2 1163 251 122 20 chr12 100704409 100704804 -43577685 + LTR16A LTR ERVL 16 450 0 2134 105 17 7 chr12 100704838 100705132 -43577357 - AluSx SINE Alu -15 297 1 2471 219 21 23 chr12 100705132 100705291 -43577198 - L1MDa LINE L1 -3374 3166 3008 1829 149 0 23 chr12 100705291 100705599 -43576890 + AluJb SINE Alu 1 301 -11 2471 219 21 23 chr12 100705599 100706188 -43576301 - L1MDa LINE L1 -3532 3008 2426 2394 74 7 10 chr12 100706200 100706509 -43575980 + AluY SINE Alu 1 308 -3 305 309 14 86 chr12 100706625 100706783 -43575706 + L1ME3A LINE L1 3552 3692 -2454 2293 95 3 0 chr12 100706783 100707090 -43575399 + AluSp SINE Alu 1 308 0 305 309 14 86 chr12 100707090 100707150 -43575339 + L1ME3A LINE L1 3692 3755 -2391 509 300 61 21 chr12 100707245 100707992 -43574497 + L1ME3A LINE L1 3781 4733 -1413 2491 245 67 17 chr12 100707992 100708588 -43573901 - MLT2E LTR ERVL 0 628 3 509 300 61 21 chr12 100708588 100708628 -43573861 + L1ME3A LINE L1 4733 4770 -1376 320 83 0 0 chr12 100708630 100708678 -43573811 + FLAM_A SINE Alu 86 133 0 1799 182 0 0 chr12 100708690 100708998 -43573491 + AluJo SINE Alu 4 311 -1 429 255 140 46 chr12 100709057 100709493 -43572996 + L1ME3A LINE L1 4792 5268 -878 514 345 124 0 chr12 100709629 100709838 -43572651 - MIR SINE MIR -14 248 14 334 309 189 13 chr12 100709847 100710080 -43572409 + L1ME3A LINE L1 5454 5727 -2081 252 273 0 23 chr12 100710142 100710230 -43572259 + L1ME3A LINE L1 5863 5948 -222 22 56 0 0 chr12 100710252 100710288 -43572201 + AT_rich Low_complexity Low_complexity 1 36 0 3173 132 10 18 chr12 100710669 100710982 -43571507 + L1MB3 LINE L1 5687 5996 -187 2801 118 3 3 chr12 100710982 100711346 -43571143 + THE1B LTR MaLR 1 364 0 3173 132 10 18 chr12 100711346 100711533 -43570956 + L1MB3 LINE L1 5996 6183 0 2641 104 31 8 chr12 100711807 100712163 -43570326 - THE1B LTR MaLR 0 364 1 308 181 28 0 chr12 100712503 100712575 -43569914 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 1772 168 28 0 chr12 100713406 100713697 -43568792 + AluJo SINE Alu 1 299 -13 403 285 113 11 chr12 100714275 100714461 -43568028 + L2 LINE L2 3085 3289 -24 300 309 57 74 chr12 100714497 100714795 -43567694 - L2 LINE L2 -468 2846 2554 610 246 117 23 chr12 100714852 100715023 -43567466 + MLT1J2 LTR MaLR 62 248 -202 385 191 45 34 chr12 100715066 100715155 -43567334 + MLT1J1 LTR MaLR 354 443 -3 626 288 58 37 chr12 100715172 100715363 -43567126 - MIR SINE MIR -34 228 34 746 286 126 19 chr12 100715641 100715959 -43566530 - LTR16A LTR ERVL -98 352 1 190 298 0 0 chr12 100715998 100716045 -43566444 + L2 LINE L2 2253 2299 -1015 2123 96 44 10 chr12 100716104 100716397 -43566092 + AluSg1 SINE Alu 1 303 -6 1514 116 42 0 chr12 100716732 100716948 -43565541 - AluSq SINE Alu -88 225 1 502 299 0 22 chr12 100717711 100717848 -43564641 - L2 LINE L2 -2 3270 3137 28 29 0 0 chr12 100718159 100718194 -43564295 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr12 100718741 100718770 -43563719 + AT_rich Low_complexity Low_complexity 1 29 0 2056 132 0 19 chr12 100718777 100719088 -43563401 + AluSx SINE Alu 1 305 -7 2540 182 58 118 chr12 100719099 100719872 -43562617 + LTR8A LTR ERV1 1 727 0 352 258 45 47 chr12 100720407 100720550 -43561939 + MIR SINE MIR 14 153 -55 356 282 59 12 chr12 100721188 100721342 -43561147 + L1ME4a LINE L1 1194 6120 -1 213 328 134 8 chr12 100721888 100722007 -43560482 - MIR SINE MIR -66 196 63 379 338 88 58 chr12 100722032 100722360 -43560129 - L2 LINE L2 -12 3260 2923 231 203 0 34 chr12 100722629 100722688 -43559801 - MLT1H LTR MaLR -387 162 106 2483 91 0 0 chr12 100722900 100723209 -43559280 - AluSg SINE Alu -1 309 1 216 64 64 0 chr12 100723236 100723283 -43559206 + (TA)n Simple_repeat Simple_repeat 1 50 0 1782 179 33 3 chr12 100726008 100726310 -43556179 - AluJo SINE Alu -1 311 1 22 0 0 0 chr12 100726342 100726364 -43556125 + AT_rich Low_complexity Low_complexity 1 22 0 234 255 118 33 chr12 100726447 100726600 -43555889 + L1M4 LINE L1 4484 4649 -1497 1503 148 0 8 chr12 100726700 100726950 -43555539 + MLT1B LTR MaLR 21 268 -122 253 282 76 30 chr12 100726960 100727091 -43555398 - L2 LINE L2 -475 2839 2703 2376 107 0 0 chr12 100728931 100729240 -43553249 + AluSx SINE Alu 1 309 -3 411 345 13 31 chr12 100729745 100729974 -43552515 + L2 LINE L2 2036 2260 -1054 669 312 48 4 chr12 100730077 100730327 -43552162 - MIR SINE MIR 0 262 2 678 298 48 78 chr12 100730339 100730883 -43551606 + L2 LINE L2 2431 2959 -355 2737 150 19 7 chr12 100730883 100731310 -43551179 + MSTB1 LTR MaLR 1 432 0 678 298 48 78 chr12 100731310 100731326 -43551163 + L2 LINE L2 2959 2974 -340 506 267 8 0 chr12 100731442 100731562 -43550927 - MIR SINE MIR -29 233 113 358 304 123 14 chr12 100731570 100731977 -43550512 - LTR33A LTR ERVL -34 489 1 350 252 122 9 chr12 100731983 100732090 -43550399 - MIR SINE MIR -142 120 2 * 465 311 107 0 chr12 100732090 100732264 -43550225 + MIR SINE MIR 70 262 0 354 235 235 0 chr12 100732338 100732457 -43550032 - MIR SINE MIR -91 171 25 198 379 48 16 chr12 100732492 100732616 -43549873 + L2 LINE L2 3141 3268 -4 29 70 0 0 chr12 100733901 100733958 -43548531 + AT_rich Low_complexity Low_complexity 1 57 0 653 188 15 30 chr12 100734528 100734661 -43547828 - FLAM_A SINE Alu -2 131 1 188 88 59 0 chr12 100734666 100734700 -43547789 + T-rich Low_complexity Low_complexity 1 36 0 * 878 137 17 11 chr12 100734697 100734872 -43547617 + CT-rich Low_complexity Low_complexity 1 176 0 1233 120 10 53 chr12 100734889 100735097 -43547392 - AluJb SINE Alu -107 205 7 27 0 0 0 chr12 100735167 100735194 -43547295 + AT_rich Low_complexity Low_complexity 1 27 0 1956 97 8 0 chr12 100735555 100735863 -43546626 + AluSp SINE Alu 27 336 0 484 250 165 16 chr12 100736685 100736873 -43545616 - MIR SINE MIR -2 260 45 323 245 94 19 chr12 100736885 100736991 -43545498 - MER91B DNA MER1_type 0 190 77 530 204 0 88 chr12 100737000 100737137 -43545352 - MER91B DNA MER1_type -61 129 5 1211 205 83 92 chr12 100737490 100738066 -43544423 - L1MC5 LINE L1 -44 7917 7347 882 101 0 0 chr12 100738186 100738305 -43544184 - AluY SINE Alu -5 306 188 2585 90 87 0 chr12 100738804 100739139 -43543350 + THE1B LTR MaLR 1 364 0 2233 108 7 3 chr12 100739164 100739470 -43543019 - AluSx SINE Alu -5 307 1 28 0 0 0 chr12 100739496 100739524 -43542965 + AT_rich Low_complexity Low_complexity 1 28 0 330 289 47 47 chr12 100739655 100739804 -43542685 + MIR SINE MIR 38 186 -76 246 333 74 0 chr12 100739966 100740047 -43542442 + MIR SINE MIR 63 149 -113 437 307 91 101 chr12 100740431 100740916 -43541573 + L3 LINE CR1 882 1361 -216 313 285 53 13 chr12 100741060 100741211 -43541278 + L1 LINE L1 3292 3448 -2698 1575 119 46 0 chr12 100741304 100741523 -43540966 - AluSq SINE Alu -78 235 7 6157 86 40 25 chr12 100741630 100742593 -43539896 + HUERS-P1 LTR ERV1 2960 3937 -2326 2217 109 6 10 chr12 100742594 100742907 -43539582 + AluSx SINE Alu 1 312 0 5403 141 13 19 chr12 100742907 100743352 -43539137 + HUERS-P1 LTR ERV1 5396 5834 -429 2223 100 3 22 chr12 100743352 100743671 -43538818 + AluSp SINE Alu 1 313 0 5403 141 13 19 chr12 100743671 100744099 -43538390 + HUERS-P1 LTR ERV1 5834 6263 0 4052 102 8 41 chr12 100744099 100744708 -43537781 + LTR8 LTR ERV1 1 589 -102 207 0 0 0 chr12 100744708 100744731 -43537758 + (A)n Simple_repeat Simple_repeat 1 23 0 557 312 13 106 chr12 100744860 100745258 -43537231 + L2 LINE L2 2908 3268 -4 216 67 0 0 chr12 100746066 100746096 -43536393 + (TC)n Simple_repeat Simple_repeat 2 31 0 2405 86 3 0 chr12 100746113 100746417 -43536072 - AluSp SINE Alu -8 305 1 262 137 59 0 chr12 100746898 100746949 -43535540 - Alu SINE Alu -2 300 247 2163 113 0 0 chr12 100746976 100747281 -43535208 + AluSx SINE Alu 1 305 0 195 231 0 19 chr12 100747282 100747334 -43535155 - MIR SINE MIR -148 114 64 1948 125 29 98 chr12 100747369 100747786 -43534703 - Charlie5 DNA MER1_type 0 2624 2237 230 190 266 13 chr12 100747825 100747904 -43534585 - Charlie5 DNA MER1_type -2491 121 23 1573 163 33 62 chr12 100748605 100748744 -43533745 + AluJo SINE Alu 2 144 -168 2187 112 0 10 chr12 100748744 100749040 -43533449 + AluSx SINE Alu 1 293 -19 1573 163 33 62 chr12 100749040 100749206 -43533283 + AluJo SINE Alu 144 298 -14 1872 139 7 4 chr12 100749373 100749692 -43532797 + AluSx SINE Alu 1 320 0 1062 242 25 12 chr12 100749967 100750211 -43532278 + MIR SINE MIR 10 256 -6 2278 111 0 13 chr12 100750470 100750785 -43531704 - AluSx SINE Alu -1 311 1 2325 96 3 0 chr12 100750920 100751223 -43531266 - AluSq SINE Alu -9 304 1 226 235 0 0 chr12 100751291 100751342 -43531147 - L2 LINE L2 0 3313 3263 260 266 0 16 chr12 100751463 100751527 -43530962 - MIR SINE MIR -125 83 21 535 112 45 0 chr12 100751798 100751887 -43530602 - HY1 scRNA scRNA -1 111 19 484 168 10 40 chr12 100752204 100752234 -43530255 - FLAM_A SINE Alu -170 141 112 2689 106 48 14 chr12 100752234 100752648 -43529841 - L1MA2 LINE L1 0 6304 5877 484 168 10 40 chr12 100752648 100752718 -43529771 - FLAM_A SINE Alu -199 112 44 3572 155 37 9 chr12 100753721 100754363 -43528126 + MER39 LTR ERV1 4 704 -3 430 218 85 57 chr12 100754480 100754691 -43527798 + MER113 DNA MER1_type? 6 222 -299 355 270 132 11 chr12 100754834 100755008 -43527481 + MIR SINE MIR 56 250 -12 1616 171 68 14 chr12 100755008 100755301 -43527188 + AluJb SINE Alu 1 309 -3 342 311 13 53 chr12 100755444 100755595 -43526894 - MIR SINE MIR -116 146 2 338 244 128 49 chr12 100755615 100755691 -43526798 - L1ME1 LINE L1 -6 6160 6091 2054 99 39 0 chr12 100755691 100755974 -43526515 + AluSx SINE Alu 1 294 -18 338 244 128 49 chr12 100755974 100756061 -43526428 - L1ME1 LINE L1 -75 6091 5984 859 114 8 0 chr12 100756090 100756213 -43526276 + LTR23 LTR ERV1 314 437 0 367 339 88 69 chr12 100756281 100756549 -43525940 + L2 LINE L2 2546 2826 -488 2094 128 0 13 chr12 100756549 100756853 -43525636 - AluSx SINE Alu -12 300 1 367 339 88 69 chr12 100756853 100757006 -43525483 + L2 LINE L2 2826 2975 -339 2269 113 3 0 chr12 100757130 100757432 -43525057 - AluSg SINE Alu -7 303 1 240 35 0 0 chr12 100757657 100757686 -43524803 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 573 200 0 0 chr12 100758332 100758432 -43524057 + FLAM_C SINE Alu 38 137 -6 194 178 0 44 chr12 100758593 100758638 -43523851 - MIR SINE MIR -100 162 120 2370 99 0 0 chr12 100758781 100759085 -43523404 + AluSq SINE Alu 1 304 -9 1734 124 50 40 chr12 100759133 100759432 -43523057 - MER4D LTR ERV1 0 903 602 1066 90 0 0 chr12 100759437 100759570 -43522919 + AluY SINE Alu 2 134 -177 2388 87 0 0 chr12 100759570 100759870 -43522619 + AluY SINE Alu 1 300 -11 3394 107 46 51 chr12 100759870 100760537 -43521952 - MER4D LTR ERV1 -295 450 1 2446 107 40 97 chr12 100760591 100761013 -43521476 + MER48 LTR ERV1 1 398 0 241 191 43 0 chr12 100761122 100761169 -43521320 + MIR SINE MIR 109 157 -105 * 566 259 174 31 chr12 100761159 100761383 -43521106 - MIR SINE MIR 0 262 7 257 254 79 0 chr12 100761389 100761452 -43521037 + MIR SINE MIR 180 247 -15 2062 113 11 0 chr12 100761459 100761742 -43520747 + AluSx SINE Alu 25 310 -2 24 0 0 0 chr12 100763073 100763097 -43519392 + AT_rich Low_complexity Low_complexity 1 24 0 210 37 0 0 chr12 100763224 100763251 -43519238 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 473 186 171 71 chr12 100763309 100763519 -43518970 + L1MC5 LINE L1 7682 7912 -49 1116 276 82 16 chr12 100763553 100763977 -43518512 - L2 LINE L2 -614 2700 2249 472 311 105 21 chr12 100764414 100764652 -43517837 - L2 LINE L2 -1190 2124 1867 1939 163 10 18 chr12 100764653 100765064 -43517425 + MER65C LTR ERV1 2 461 0 391 268 106 57 chr12 100765066 100765216 -43517273 - L2 LINE L2 -1446 1868 1699 2157 113 0 0 chr12 100765216 100765533 -43516956 - AluSx SINE Alu 0 317 1 391 268 106 57 chr12 100765533 100765627 -43516862 - L2 LINE L2 -1615 1699 1611 273 308 38 3 chr12 100766615 100766778 -43515711 + MIR SINE MIR 17 230 -32 451 256 122 13 chr12 100766998 100767154 -43515335 + MIR SINE MIR 76 248 -14 1501 214 30 85 chr12 100767565 100768038 -43514451 + L1MC4 LINE L1 7442 7939 -103 198 71 0 0 chr12 100768038 100768066 -43514423 + (CA)n Simple_repeat Simple_repeat 2 29 0 839 229 6 0 chr12 100768066 100768223 -43514266 + FAM SINE Alu 1 158 -17 1501 214 30 85 chr12 100768223 100768384 -43514105 + L1MC4 LINE L1 7937 8042 0 24 0 0 0 chr12 100769235 100769259 -43513230 + AT_rich Low_complexity Low_complexity 1 24 0 189 250 0 0 chr12 100769311 100769355 -43513134 - L2 LINE L2 0 3313 3270 2916 144 30 2 chr12 100769798 100770234 -43512255 - MER83 LTR ERV1 0 448 1 402 348 14 0 chr12 100770240 100770381 -43512108 + MIR SINE MIR 13 155 -107 2168 150 48 20 chr12 100770391 100770745 -43511744 + THE1B LTR MaLR 1 364 0 240 376 9 0 chr12 100771050 100771159 -43511330 - Tigger8 DNA MER2_type -555 111 2 810 188 47 13 chr12 100771254 100771403 -43511086 - AluJo SINE Alu -157 155 2 773 183 15 0 chr12 100771482 100771646 -43510843 + MLT1J LTR MaLR 1 130 -320 304 253 44 11 chr12 100771804 100771895 -43510594 + MLT1J LTR MaLR 418 511 0 262 178 0 0 chr12 100773454 100773499 -43508990 - U3 snRNA snRNA -172 45 1 240 35 0 0 chr12 100773504 100773533 -43508956 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 280 415 0 8 chr12 100773545 100773668 -43508821 + MER5A DNA MER1_type 68 189 0 457 292 133 27 chr12 100773847 100774175 -43508314 + L1ME LINE L1 5383 5748 -373 3174 169 69 12 chr12 100774181 100774799 -43507690 - MER39 LTR ERV1 -2 705 1 195 132 0 0 chr12 100774885 100774905 -43507584 + (TAA)n Simple_repeat Simple_repeat 1 23 -15 1816 153 11 14 chr12 100774905 100775192 -43507297 + AluJb SINE Alu 1 286 -26 195 132 0 0 chr12 100775192 100775209 -43507280 + (TAA)n Simple_repeat Simple_repeat 22 38 0 262 222 127 0 chr12 100775217 100775280 -43507209 - MIR SINE MIR 0 262 192 272 280 68 42 chr12 100776403 100776521 -43505968 + L2 LINE L2 2933 3053 -219 960 240 60 4 chr12 100776586 100776819 -43505670 - MER90 LTR ERV1 -3 611 366 812 243 61 9 chr12 100776842 100777056 -43505433 - MER90 LTR ERV1 -388 226 2 228 219 27 55 chr12 100777167 100777240 -43505249 + MLT1K LTR MaLR 81 151 -437 822 305 65 21 chr12 100777302 100777689 -43504800 - LTR16A LTR ERVL -21 429 26 2054 166 64 6 chr12 100777787 100778131 -43504358 - MLT1A1 LTR MaLR 0 365 2 360 267 79 61 chr12 100778356 100778420 -43504069 + MLT1K LTR MaLR 379 440 -148 846 239 71 20 chr12 100778420 100778617 -43503872 - MER63A DNA MER1_type -3 207 1 360 267 79 61 chr12 100778617 100778717 -43503772 + MLT1K LTR MaLR 440 546 -42 240 359 0 26 chr12 100778731 100778809 -43503680 + L2 LINE L2 3116 3191 -81 294 29 0 0 chr12 100779001 100779036 -43503453 + (TC)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr12 100779035 100779058 -43503431 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 467 332 97 5 chr12 100779089 100779285 -43503204 + MIR SINE MIR 22 235 -27 1858 195 70 11 chr12 100779385 100779827 -43502662 + Charlie4a DNA MER1_type 41 508 0 221 240 0 40 chr12 100780237 100780312 -43502177 + CT-rich Low_complexity Low_complexity 6 77 0 462 18 0 0 chr12 100780468 100780523 -43501966 + (CA)n Simple_repeat Simple_repeat 1 55 0 207 146 0 0 chr12 100780523 100780564 -43501925 + (TC)n Simple_repeat Simple_repeat 2 42 0 3519 102 36 4 chr12 100781007 100781509 -43500980 + L1PA13 LINE L1 5644 6161 -2 2357 103 3 0 chr12 100781517 100781829 -43500660 + AluSp SINE Alu 1 313 0 2847 13 0 3 chr12 100781883 100782195 -43500294 + AluYa5 SINE Alu 1 311 0 1261 187 0 43 chr12 100783662 100783961 -43498528 - L1M4 LINE L1 -1114 5032 4747 207 326 10 31 chr12 100784060 100784158 -43498331 - MER91A DNA MER1_type -27 169 74 584 219 77 71 chr12 100784415 100784598 -43497891 + MER5A DNA MER1_type 4 187 -2 342 0 0 0 chr12 100785525 100785563 -43496926 + (CA)n Simple_repeat Simple_repeat 2 39 0 1784 171 2 57 chr12 100786069 100786436 -43496053 + L1MB7 LINE L1 5485 5829 -355 3603 142 40 23 chr12 100786436 100787005 -43495484 - LTR19B LTR ERV1 -1 579 1 1784 171 2 57 chr12 100787005 100787033 -43495456 + L1MB7 LINE L1 5829 5857 -327 783 294 85 33 chr12 100787142 100787567 -43494922 - L1MC/D LINE L1 -2083 5725 5279 216 397 43 0 chr12 100787576 100787692 -43494797 - L2 LINE L2 -3 3269 3149 1970 125 4 4 chr12 100787692 100787972 -43494517 - AluSx SINE Alu -32 280 1 1711 218 39 26 chr12 100788875 100789333 -43493156 - MLT1C LTR MaLR -2 465 2 287 305 195 0 chr12 100789469 100789587 -43492902 + MIR SINE MIR 102 242 -20 222 118 0 0 chr12 100790112 100790146 -43492343 + (A)n Simple_repeat Simple_repeat 1 34 0 2243 104 13 0 chr12 100790482 100790817 -43491672 + AluSx SINE Alu 1 339 0 385 313 184 0 chr12 100790905 100791084 -43491405 - MIR SINE MIR -50 212 1 296 218 0 0 chr12 100791101 100791156 -43491333 + AluSp/q SINE Alu 196 250 -53 948 167 4 106 chr12 100791156 100791225 -43491264 + AluJb SINE Alu 85 159 -153 935 130 31 6 chr12 100791225 100791386 -43491103 - L1MB3 LINE L1 -1 6182 6018 948 167 4 106 chr12 100791386 100791561 -43490928 + AluJb SINE Alu 159 304 -8 10614 201 18 99 chr12 100791564 100792012 -43490477 - L1MB3 LINE L1 -165 6009 5526 484 75 15 0 chr12 100792012 100792079 -43490410 + MADE1 DNA Mariner 13 80 0 10614 201 18 99 chr12 100792079 100792300 -43490189 - L1MB3 LINE L1 -648 5526 5289 1873 164 0 19 chr12 100792300 100792617 -43489872 - AluJb SINE Alu -1 311 1 10614 201 18 99 chr12 100792617 100793458 -43489031 - L1MB3 LINE L1 -885 5289 4381 2329 99 0 0 chr12 100793458 100793761 -43488728 - AluSx SINE Alu -9 303 1 10614 201 18 99 chr12 100793761 100794211 -43488278 - L1MB3 LINE L1 -1793 4381 3896 2178 128 0 3 chr12 100794211 100794516 -43487973 - AluSx SINE Alu -8 304 1 10614 201 18 99 chr12 100794516 100794774 -43487715 - L1MB3 LINE L1 -2278 3896 3619 1619 201 23 33 chr12 100794774 100794938 -43487551 - AluJo SINE Alu -2 300 139 1839 110 13 68 chr12 100794938 100795123 -43487366 - AluSq SINE Alu 0 313 157 2077 131 3 3 chr12 100795123 100795420 -43487069 - AluSq SINE Alu -16 297 1 1839 110 13 68 chr12 100795420 100795569 -43486920 - AluSq SINE Alu -156 157 1 1619 201 23 33 chr12 100795569 100795707 -43486782 - AluJo SINE Alu -163 139 1 10614 201 18 99 chr12 100795707 100796689 -43485800 - L1MB3 LINE L1 -2555 3619 2559 801 165 0 30 chr12 100796689 100796822 -43485667 - FLAM_C SINE Alu -14 129 1 10614 201 18 99 chr12 100796822 100796944 -43485545 - L1MB3 LINE L1 -3615 2559 2785 2309 101 3 0 chr12 100796944 100797242 -43485247 - AluSp SINE Alu -14 299 1 10614 201 18 99 chr12 100797242 100797451 -43485038 - L1MB3 LINE L1 -3388 2786 2562 1739 166 3 21 chr12 100797461 100797750 -43484739 - AluJo SINE Alu -28 284 1 207 287 96 0 chr12 100797752 100797846 -43484643 + MIR SINE MIR 99 201 -61 966 265 34 23 chr12 100797847 100798111 -43484378 - MLT1L LTR MaLR 0 615 349 644 183 0 0 chr12 100798514 100798618 -43483871 + U13 snRNA snRNA 1 104 0 312 110 27 14 chr12 100798640 100798713 -43483776 + A-rich Low_complexity Low_complexity 2 75 0 806 143 0 93 chr12 100798985 100799125 -43483364 - FLAM_A SINE Alu -3 130 4 1005 241 11 88 chr12 100799128 100799480 -43483009 - MER65-int LTR ERV1 -1074 3862 3538 923 207 40 153 chr12 100799537 100800007 -43482482 - MER65-int LTR ERV1 -1458 3478 3118 2275 102 0 6 chr12 100800090 100800405 -43482084 + AluSq SINE Alu 1 313 0 2103 128 7 7 chr12 100800439 100800745 -43481744 + AluSx SINE Alu 1 306 -6 868 165 0 15 chr12 100801062 100801195 -43481294 + FLAM_C SINE Alu 1 131 -2 256 261 14 87 chr12 100801328 100801466 -43481023 - MER65-int LTR ERV1 -1980 4351 4224 2159 112 3 20 chr12 100801684 100802013 -43480476 + AluSx SINE Alu 1 312 0 371 296 60 37 chr12 100802028 100802244 -43480245 - MER65-int LTR ERV1 -2236 2700 2480 274 73 36 36 chr12 100802488 100802543 -43479946 - MER65-int LTR ERV1 -3491 1445 1391 262 259 0 35 chr12 100802563 100802648 -43479841 - MER65-int LTR ERV1 -3489 1634 1553 325 220 33 80 chr12 100802691 100802841 -43479648 - MER65-int LTR ERV1 -3621 1315 1173 1388 84 0 0 chr12 100802841 100803036 -43479453 + L1PA3 LINE L1 5980 6174 0 279 207 12 37 chr12 100803094 100803176 -43479313 - MER65-int LTR ERV1 -3102 1769 1690 870 193 118 133 chr12 100803206 100803597 -43478892 + MER34B LTR ERV1 5 386 -179 2342 93 3 10 chr12 100803597 100803908 -43478581 + AluSx SINE Alu 4 312 0 870 193 118 133 chr12 100803908 100804086 -43478403 + MER34B LTR ERV1 386 565 0 2074 126 7 3 chr12 100804251 100804552 -43477937 + AluSg SINE Alu 1 302 -8 1255 175 84 96 chr12 100804915 100804944 -43477545 - LTR37A LTR ERV1 0 426 398 500 139 13 0 chr12 100804944 100805023 -43477466 + MADE1 DNA Mariner 1 80 0 1255 175 84 96 chr12 100805023 100805123 -43477366 - LTR37A LTR ERV1 -28 398 298 2186 163 46 73 chr12 100805123 100805601 -43476888 - MLT1C LTR MaLR -2 465 1 1255 175 84 96 chr12 100805601 100805899 -43476590 - LTR37A LTR ERV1 -128 298 3 1991 150 0 0 chr12 100806204 100806498 -43475991 + AluSx SINE Alu 1 294 -18 1908 105 4 0 chr12 100806964 100807241 -43475248 + AluSx SINE Alu 35 312 0 608 295 42 5 chr12 100808059 100808252 -43474237 - MIR SINE MIR -17 245 46 2180 160 48 0 chr12 100808353 100808684 -43473805 - MER7A DNA MER2_type 0 346 2 1119 135 0 6 chr12 100809140 100809296 -43473193 + LTR8 LTR ERV1 537 691 0 17372 114 37 62 chr12 100809296 100810522 -43471967 + HUERS-P1 LTR ERV1 1 1256 -5007 375 23 0 0 chr12 100810522 100810566 -43471923 + (TC)n Simple_repeat Simple_repeat 2 45 0 294 29 0 0 chr12 100810565 100810600 -43471889 + (TG)n Simple_repeat Simple_repeat 2 36 0 * 17372 114 37 62 chr12 100810566 100812351 -43470138 + HUERS-P1 LTR ERV1 1256 2904 -3359 2243 112 3 3 chr12 100812470 100812775 -43469714 - AluSq SINE Alu -8 305 1 623 187 113 1 chr12 100812794 100812992 -43469497 - L1ME LINE L1 -685 5479 5262 1665 180 41 0 chr12 100813548 100813843 -43468646 - AluJb SINE Alu -3 309 3 202 184 31 51 chr12 100814198 100814296 -43468193 + (TATAA)n Simple_repeat Simple_repeat 4 99 0 2758 110 266 2 chr12 100815426 100815918 -43466571 + LTR29 LTR ERV1 1 622 0 503 306 73 16 chr12 100816005 100816253 -43466236 - MIR SINE MIR 0 262 1 2399 164 46 37 chr12 100816328 100816785 -43465704 + LOR1b LTR ERV1 1 461 0 250 253 91 52 chr12 100817216 100817370 -43465119 + HAL1b LINE L1 1188 1347 -1 457 218 13 0 chr12 100817432 100817555 -43464934 - FLAM_C SINE Alu 0 160 37 323 267 141 34 chr12 100817577 100817839 -43464650 + L1ME4a LINE L1 5662 5951 -170 750 226 0 0 chr12 100818011 100818165 -43464324 - FLAM_C SINE Alu 0 154 1 1477 141 98 8 chr12 100818635 100818890 -43463599 - MER50 LTR ERV1 -23 711 434 1062 115 115 48 chr12 100818892 100819100 -43463389 - MER50 LTR ERV1 -512 222 1 1754 154 68 49 chr12 100819103 100819715 -43462774 + L1MB3 LINE L1 5611 6183 0 238 303 97 41 chr12 100819769 100819914 -43462575 + L2 LINE L2 2521 2673 -641 3168 132 0 0 chr12 100819954 100820402 -43462087 - L1PB3 LINE L1 0 6154 5707 549 209 19 0 chr12 100820624 100820782 -43461707 + (TA)n Simple_repeat Simple_repeat 1 161 0 606 312 103 7 chr12 100820821 100821113 -43461376 - L1ME3 LINE L1 -230 5915 5596 239 284 34 11 chr12 100821232 100821320 -43461169 - MLT1L LTR MaLR -221 394 305 * 318 184 156 42 chr12 100821317 100821413 -43461076 - MLT1J LTR MaLR -344 167 100 409 288 107 32 chr12 100821502 100822082 -43460407 - L1ME3 LINE L1 -560 5585 4956 476 282 75 24 chr12 100822227 100822599 -43459890 - L1ME3 LINE L1 -3525 2604 2214 667 244 85 77 chr12 100822946 100823718 -43458771 - L1ME3 LINE L1 -4678 1632 801 196 102 41 0 chr12 100823719 100823768 -43458721 + (TTATA)n Simple_repeat Simple_repeat 2 52 0 38 0 0 0 chr12 100823768 100823806 -43458683 + AT_rich Low_complexity Low_complexity 1 38 0 3005 172 21 36 chr12 100824045 100824603 -43457886 - MER44D DNA MER2_type 0 605 1 863 150 97 65 chr12 100824784 100825031 -43457458 - MER112 DNA MER1_type 0 256 2 520 206 93 67 chr12 100825522 100825634 -43456855 - Charlie8 DNA MER1_type -130 200 79 2171 107 0 36 chr12 100825634 100825777 -43456712 + AluSx SINE Alu 1 148 -164 2256 111 0 0 chr12 100825777 100826075 -43456414 + AluSx SINE Alu 1 298 -14 2171 107 0 36 chr12 100826075 100826240 -43456249 + AluSx SINE Alu 148 298 -14 520 206 93 67 chr12 100826240 100826321 -43456168 - Charlie8 DNA MER1_type -251 79 2 2097 135 7 0 chr12 100827058 100827354 -43455135 - AluJb SINE Alu -14 298 1 209 247 14 41 chr12 100827404 100827477 -43455012 + CT-rich Low_complexity Low_complexity 2 72 0 2239 89 16 26 chr12 100828251 100828554 -43453935 + AluSg SINE Alu 1 300 -10 553 297 139 0 chr12 100828573 100828782 -43453707 - MIR SINE MIR -16 246 9 2028 130 3 10 chr12 100828922 100829266 -43453223 + AluSx SINE Alu 1 312 0 1546 199 52 62 chr12 100829776 100830176 -43452313 - MER21B LTR ERV1 -3 860 465 2401 190 66 92 chr12 100830176 100831003 -43451486 + LTR1B LTR ERV1 1 999 -21 1362 183 7 89 chr12 100831026 100831465 -43451024 - MER21B LTR ERV1 -410 453 -21 198 0 0 0 chr12 100831465 100831487 -43451002 + (TTAG)n Simple_repeat Simple_repeat 3 24 0 2158 107 18 0 chr12 100831487 100831767 -43450722 - AluSx SINE Alu -27 285 1 1362 183 7 89 chr12 100831767 100831842 -43450647 - MER21B LTR ERV1 -782 81 1 233 95 0 24 chr12 100832745 100832787 -43449702 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 310 295 35 44 chr12 100832846 100832869 -43449620 - MIR SINE MIR -68 140 118 5363 94 4 21 chr12 100832869 100833128 -43449361 - LTR8 LTR ERV1 0 691 429 2227 130 0 0 chr12 100833128 100833427 -43449062 + AluSx SINE Alu 1 299 -13 5363 94 4 21 chr12 100833427 100833870 -43448619 - LTR8 LTR ERV1 -262 429 1 310 295 35 44 chr12 100833870 100834023 -43448466 - MIR SINE MIR -90 118 19 215 254 17 0 chr12 100834035 100834094 -43448395 + MIR SINE MIR 203 262 0 29 28 0 0 chr12 100834157 100834193 -43448296 + AT_rich Low_complexity Low_complexity 1 36 0 2007 177 164 42 chr12 100834241 100834601 -43447888 + MLT1F LTR MaLR 3 438 -104 2739 118 6 3 chr12 100834601 100834964 -43447525 - THE1B LTR MaLR 0 364 1 2007 177 164 42 chr12 100834964 100835084 -43447405 + MLT1F LTR MaLR 438 542 0 224 317 73 41 chr12 100835175 100835298 -43447191 + L2 LINE L2 3141 3267 -5 255 114 0 0 chr12 100836468 100836512 -43445977 + (CA)n Simple_repeat Simple_repeat 2 45 0 1215 209 53 108 chr12 100836520 100837015 -43445474 + MER110A LTR ERV1 44 491 0 446 210 34 42 chr12 100837237 100837356 -43445133 + MER103 DNA DNA 3 120 -46 196 281 37 37 chr12 100838017 100838099 -43444390 - MIR SINE MIR -6 256 175 804 284 72 6 chr12 100838112 100838362 -43444127 - MIR SINE MIR -1 261 2 383 261 84 8 chr12 100838375 100838494 -43443995 - MIR3 SINE MIR -72 136 9 992 192 16 6 chr12 100838495 100838677 -43443812 + MER5A DNA MER1_type 5 188 -1 2272 114 3 0 chr12 100839994 100840302 -43442187 + AluSx SINE Alu 1 309 -3 678 215 17 12 chr12 100941062 100941234 -43341255 - MER39 LTR ERV1 -12 695 523 13086 177 42 30 chr12 100941252 100941833 -43340656 - L1PB1 LINE L1 -5 6862 6290 2577 66 0 0 chr12 100941833 100942137 -43340352 - AluY SINE Alu -7 304 1 13086 177 42 30 chr12 100942137 100945530 -43336959 - L1PB1 LINE L1 -577 6290 2941 2054 118 10 13 chr12 100945530 100945836 -43336653 - AluSx SINE Alu -7 305 1 13086 177 42 30 chr12 100945836 100946424 -43336065 - L1PB1 LINE L1 -3926 2941 2362 1747 151 7 7 chr12 100946424 100946709 -43335780 - AluSx SINE Alu -27 285 1 13086 177 42 30 chr12 100946709 100946915 -43335574 - L1PB1 LINE L1 -4505 2362 2160 2081 128 16 3 chr12 100946915 100947220 -43335269 - AluSc SINE Alu 0 309 1 13086 177 42 30 chr12 100947220 100948250 -43334239 - L1PB1 LINE L1 -4707 2160 995 318 138 17 0 chr12 100948250 100948308 -43334181 - L1PB1 LINE L1 -6669 194 136 640 185 117 15 chr12 100948323 100948537 -43333952 - MER39 LTR ERV1 -200 507 67 1725 155 51 34 chr12 100948800 100949155 -43333334 + MER46B DNA MER2_type 1 236 0 2058 152 0 3 chr12 100950061 100950371 -43332118 - AluJb SINE Alu -3 309 1 229 313 50 88 chr12 100950395 100950715 -43331774 + L2 LINE L2 2559 2866 -448 24 32 0 0 chr12 100950845 100950876 -43331613 + AT_rich Low_complexity Low_complexity 1 31 0 5200 150 41 15 chr12 100950888 100951408 -43331081 - L1MA4A LINE L1 -4 7001 6496 2358 78 0 26 chr12 100951408 100951717 -43330772 + AluY SINE Alu 1 301 -10 5200 150 41 15 chr12 100951717 100952641 -43329848 - L1MA4A LINE L1 -509 6496 5523 1163 183 32 21 chr12 100952622 100952906 -43329583 - L1MA4A LINE L1 -3624 3224 2938 * 4286 199 302 15 chr12 100952886 100954643 -43327846 - L1MA4A LINE L1 -4478 2371 110 339 380 66 15 chr12 100954762 100954899 -43327590 + L2 LINE L2 3121 3264 -8 1124 237 144 31 chr12 100956721 100957173 -43325316 - MLT1D LTR MaLR 0 505 3 377 301 13 70 chr12 100957427 100957583 -43324906 - L2 LINE L2 -229 3043 2897 2465 74 3 7 chr12 100957620 100957930 -43324559 - AluY SINE Alu -2 309 1 463 240 116 0 chr12 100958041 100958170 -43324319 + L1ME2 LINE L1 5354 5497 -665 1919 152 31 0 chr12 100958295 100958618 -43323871 - LTR45B LTR ERV1 -135 354 22 323 243 0 18 chr12 100958668 100958779 -43323710 + CT-rich Low_complexity Low_complexity 5 113 0 249 88 0 0 chr12 100960310 100960344 -43322145 - LTR45B LTR ERV1 -453 36 3 2200 122 7 0 chr12 100960388 100960684 -43321805 + AluSp SINE Alu 1 298 -15 2121 180 58 36 chr12 100960685 100961207 -43321282 + L1ME2 LINE L1 5526 6058 -106 442 123 0 0 chr12 100961278 100961343 -43321146 + Tigger3(Golem) DNA MER2_type 40 104 -2925 1107 142 14 60 chr12 100961344 100961359 -43321130 + Tigger3(Golem) DNA MER2_type 2817 2831 -197 3527 127 24 12 chr12 100961359 100961943 -43320546 - LTR10C LTR ERV1 0 591 1 1107 142 14 60 chr12 100961943 100962145 -43320344 + Tigger3(Golem) DNA MER2_type 2831 3024 -4 1274 196 33 85 chr12 100962412 100962718 -43319771 + AluJo SINE Alu 1 290 -22 910 242 95 91 chr12 100962721 100963069 -43319420 - L1ME3A LINE L1 -15 6549 6195 1257 123 128 0 chr12 100963069 100963171 -43319318 + MER30 DNA MER1_type 1 89 -141 206 81 27 0 chr12 100963171 100963208 -43319281 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1257 123 128 0 chr12 100963208 100963309 -43319180 + MER30 DNA MER1_type 89 230 0 910 242 95 91 chr12 100963309 100963643 -43318846 - L1ME3A LINE L1 -369 6195 5864 400 248 26 20 chr12 100963657 100963810 -43318679 + L1M LINE L1 5265 5418 -760 1117 271 91 53 chr12 100963851 100964838 -43317651 - L1ME3A LINE L1 -1076 5464 4440 1285 183 39 0 chr12 100964936 100965193 -43317296 - L1MB5 LINE L1 0 6174 5908 3720 242 99 34 chr12 100965199 100965391 -43317098 - L1ME3A LINE L1 -5012 1528 1350 2111 143 3 0 chr12 100965391 100965691 -43316798 - AluSx SINE Alu -11 301 1 3720 242 99 34 chr12 100965691 100965937 -43316552 - L1ME3A LINE L1 -5190 1350 1122 2173 107 3 7 chr12 100965937 100965949 -43316540 - AluSx SINE Alu -15 297 286 270 0 0 0 chr12 100965949 100965979 -43316510 + (TATG)n Simple_repeat Simple_repeat 2 31 0 2173 107 3 7 chr12 100965979 100966264 -43316225 - AluSx SINE Alu -26 286 1 3720 242 99 34 chr12 100966264 100966423 -43316066 - L1ME3A LINE L1 -5418 1122 975 1451 200 16 32 chr12 100966423 100966738 -43315751 - AluJo SINE Alu -1 311 2 3720 242 99 34 chr12 100966738 100967196 -43315293 - L1ME3A LINE L1 -5565 975 548 213 39 0 0 chr12 100967196 100967222 -43315267 + (TG)n Simple_repeat Simple_repeat 1 26 0 3720 242 99 34 chr12 100967222 100967582 -43314907 - L1ME3A LINE L1 -5992 548 17 994 283 17 17 chr12 100967584 100968054 -43314435 - L1M4 LINE L1 -3170 2976 2507 35732 84 14 10 chr12 100968611 100974215 -43308274 - L1P2 LINE L1 -524 5630 11 217 288 45 0 chr12 100974297 100974363 -43308126 + MIR SINE MIR 193 261 -1 226 261 84 0 chr12 100974533 100974573 -43307916 - Zaphod DNA AcHobo -306 3725 3690 2109 156 0 0 chr12 100974573 100974874 -43307615 - AluSx SINE Alu -11 301 1 226 261 84 0 chr12 100974874 100974952 -43307537 - Zaphod DNA AcHobo -341 3690 3597 341 158 13 0 chr12 100974962 100975038 -43307451 - Zaphod DNA AcHobo -3060 971 895 5370 143 39 20 chr12 100975116 100976174 -43306315 - L1PA16 LINE L1 -9 6157 5061 2020 153 0 61 chr12 100976174 100976533 -43305956 - MER1B DNA MER1_type 0 337 1 5370 143 39 20 chr12 100976533 100976829 -43305660 - L1PA16 LINE L1 -1105 5061 4772 498 256 139 0 chr12 100976848 100976977 -43305512 - MIR SINE MIR -77 185 39 2124 235 92 18 chr12 100976978 100977592 -43304897 + L1MEc LINE L1 36 716 -5680 2029 146 11 17 chr12 100977592 100977941 -43304548 - MER7A DNA MER2_type 0 346 2 2124 235 92 18 chr12 100977941 100978063 -43304426 + L1MEc LINE L1 716 827 -5569 702 248 0 0 chr12 100978060 100978217 -43304272 + L1M4 LINE L1 3524 3680 -2466 * 6918 200 92 17 chr12 100978214 100980152 -43302337 + L1MDa LINE L1 536 2619 -3921 318 155 14 42 chr12 100980175 100980246 -43302243 + Tigger5 DNA MER2_type 2250 2318 -5 * 461 202 10 48 chr12 100980240 100980344 -43302145 - Tigger5 DNA MER2_type -2223 100 1 3104 245 55 44 chr12 100980421 100981804 -43300685 + L1MDa LINE L1 2611 4008 -2532 392 189 45 36 chr12 100981804 100981915 -43300574 + L1MD1 LINE L1 6131 6242 0 363 277 80 18 chr12 100981926 100982038 -43300451 + HAL1 LINE L1 1451 1569 -938 245 203 0 85 chr12 100982042 100982101 -43300388 - MIR SINE MIR -208 54 1 392 254 16 63 chr12 100982562 100982688 -43299801 + L2 LINE L2 3194 3313 0 185 158 0 105 chr12 100982790 100982847 -43299642 + L2 LINE L2 2188 2238 -1076 288 282 184 0 chr12 100982908 100983011 -43299478 + MIR SINE MIR 127 248 -14 209 274 48 16 chr12 100983110 100983172 -43299317 - MIR3 SINE MIR -18 190 127 248 284 15 0 chr12 100983346 100983413 -43299076 + L2 LINE L2 2292 2359 -955 223 329 12 12 chr12 100983412 100983494 -43298995 - MIR3 SINE MIR -6 202 121 * 249 98 0 0 chr12 100983603 100983644 -43298845 + (T)n Simple_repeat Simple_repeat 1 41 0 212 194 81 65 chr12 100984433 100984495 -43297994 - L2 LINE L2 -44 3228 3166 1702 172 161 6 chr12 100986238 100986598 -43295891 + MER47B DNA MER2_type 2 417 -1 1850 171 0 3 chr12 100986675 100986968 -43295521 + AluSx SINE Alu 1 292 -20 396 59 0 0 chr12 100986982 100987033 -43295456 + (TG)n Simple_repeat Simple_repeat 2 52 0 22 56 0 0 chr12 100987598 100987634 -43294855 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr12 100987877 100987908 -43294581 + AT_rich Low_complexity Low_complexity 1 31 0 519 269 7 14 chr12 100988072 100988217 -43294272 + L2 LINE L2 2509 2652 -662 937 284 111 44 chr12 100988227 100988705 -43293784 + L2 LINE L2 2804 3313 0 477 273 62 45 chr12 100988743 100988919 -43293570 + MIR SINE MIR 43 221 -41 264 330 42 17 chr12 100988964 100989082 -43293407 + MIR SINE MIR 20 140 -122 202 364 0 76 chr12 100990865 100990997 -43291492 - MIR SINE MIR -71 137 16 22 35 0 0 chr12 100991267 100991296 -43291193 + AT_rich Low_complexity Low_complexity 1 29 0 2236 106 0 7 chr12 100991444 100991745 -43290744 + AluSg1 SINE Alu 1 299 -10 1399 215 21 7 chr12 100992724 100993012 -43289477 - AluJo SINE Alu -20 292 1 1707 179 0 14 chr12 100993040 100993325 -43289164 + AluJo SINE Alu 1 281 -31 2283 81 13 3 chr12 100994235 100994542 -43287947 - AluY SINE Alu -1 310 1 691 186 8 0 chr12 100994725 100994843 -43287646 - FLAM_A SINE Alu -14 119 1 5971 236 129 44 chr12 100995950 100997922 -43284567 - L1MC4a LINE L1 0 7808 5528 1844 142 19 23 chr12 100997922 100998231 -43284258 - AluSx SINE Alu -4 308 1 5971 236 129 44 chr12 100998231 100999053 -43283436 - L1MC4a LINE L1 -2280 5528 4777 860 149 40 14 chr12 100999069 100999217 -43283272 - FRAM SINE Alu -7 169 18 329 355 30 10 chr12 100999218 100999415 -43283074 - L1MC4a LINE L1 -1363 4783 4583 2981 175 70 14 chr12 100999434 100999752 -43282737 - L1MB3 LINE L1 -7 6176 5877 2220 112 3 0 chr12 100999752 101000048 -43282441 - AluSx SINE Alu -12 300 4 2981 175 70 14 chr12 101000048 101000391 -43282098 - L1MB3 LINE L1 -306 5877 5478 9369 149 55 32 chr12 101000398 101001073 -43281416 - L1MA5 LINE L1 -8 7354 6696 2020 111 3 59 chr12 101001073 101001380 -43281109 - AluSx SINE Alu -22 290 1 9369 149 55 32 chr12 101001380 101001717 -43280772 - L1MA5 LINE L1 -666 6696 6368 2165 115 3 0 chr12 101001717 101002012 -43280477 + AluSp SINE Alu 1 296 -17 9369 149 55 32 chr12 101002012 101002170 -43280319 - L1MA5 LINE L1 -994 6368 6215 1595 215 3 28 chr12 101002170 101002495 -43279994 - 7SLRNA srpRNA srpRNA 0 320 4 9369 149 55 32 chr12 101002495 101004381 -43278108 - L1MA5 LINE L1 -1147 6215 4228 3186 120 49 10 chr12 101004392 101004884 -43277605 - MER9 LTR ERVK 0 511 1 578 127 0 0 chr12 101004884 101004963 -43277526 - HERVK9 LTR ERVK 0 5916 5838 * 19895 63 24 25 chr12 101004960 101006805 -43275684 - HERVK9 LTR ERVK -3252 2664 762 207 217 0 83 chr12 101006805 101006865 -43275624 - MER5B DNA MER1_type -69 109 55 19895 63 24 25 chr12 101006865 101007627 -43274862 - HERVK9 LTR ERVK -5154 762 1 3291 112 47 4 chr12 101007627 101008117 -43274372 - MER9 LTR ERVK 0 511 1 5987 217 35 39 chr12 101008129 101008180 -43274309 - L1MA5 LINE L1 -2998 4210 4160 2410 84 7 0 chr12 101008180 101008489 -43274000 - AluY SINE Alu 0 311 1 5987 217 35 39 chr12 101008489 101008670 -43273819 - L1MA5 LINE L1 -3048 4160 3980 2059 126 27 0 chr12 101008670 101008971 -43273518 - AluSc SINE Alu 0 309 1 5987 217 35 39 chr12 101008971 101009215 -43273274 - L1MA5 LINE L1 -3228 3980 3736 1852 150 30 13 chr12 101009215 101009515 -43272974 + AluSx SINE Alu 1 305 -7 5987 217 35 39 chr12 101009515 101011247 -43271242 - L1MA5 LINE L1 -3472 3736 1998 2233 114 0 16 chr12 101011247 101011562 -43270927 - AluSg SINE Alu 0 310 1 5987 217 35 39 chr12 101011562 101012711 -43269778 - L1MA5 LINE L1 -5210 1998 21 3741 233 88 17 chr12 101012752 101014215 -43268274 - L1MB3 LINE L1 -687 5484 3854 6376 110 17 18 chr12 101014215 101014391 -43268098 - HSMAR1 DNA Mariner 0 1287 1112 2403 95 3 0 chr12 101014391 101014696 -43267793 - AluSq SINE Alu -5 308 3 6376 110 17 18 chr12 101014696 101015454 -43267035 - HSMAR1 DNA Mariner -175 1112 354 343 77 108 0 chr12 101015584 101015649 -43266840 - L1MB3 LINE L1 -1 6182 6111 499 294 8 0 chr12 101015811 101015930 -43266559 - L1ME1 LINE L1 -77 6089 5970 1640 244 61 24 chr12 101015933 101016581 -43265908 - L1ME1 LINE L1 -312 5854 5189 396 59 0 0 chr12 101016581 101016632 -43265857 + (TG)n Simple_repeat Simple_repeat 2 52 0 1036 159 0 0 chr12 101016649 101016812 -43265677 - AluJb SINE Alu -16 296 134 385 57 57 0 chr12 101016933 101016986 -43265503 - AluSq/x SINE Alu -171 131 76 1769 143 46 0 chr12 101016989 101017269 -43265220 + AluJb SINE Alu 5 297 -15 384 281 56 49 chr12 101017285 101017570 -43264919 + L1MEc LINE L1 1775 2061 -4335 3574 256 59 26 chr12 101017574 101019107 -43263382 + L1MEc LINE L1 2093 3637 -2578 3376 212 83 45 chr12 101019131 101019229 -43263260 + L1MB8 LINE L1 3767 3860 -2387 1781 142 3 64 chr12 101019229 101019559 -43262930 + AluJo SINE Alu 3 312 0 3376 212 83 45 chr12 101019559 101020014 -43262475 + L1MB8 LINE L1 3860 4296 -1951 2312 70 3 3 chr12 101020014 101020301 -43262188 - AluY SINE Alu -22 289 3 3376 212 83 45 chr12 101020301 101022118 -43260371 + L1MB8 LINE L1 4296 6247 0 436 233 92 8 chr12 101022199 101022319 -43260170 + MLT1L LTR MaLR 424 553 -62 251 300 116 19 chr12 101022584 101022717 -43259772 - MIR SINE MIR -62 146 2 381 290 86 19 chr12 101023229 101023391 -43259098 + L2 LINE L2 3132 3304 -9 234 180 80 0 chr12 101023467 101023517 -43258972 - MIR SINE MIR -68 140 87 2183 128 0 0 chr12 101023568 101023864 -43258625 + AluSc SINE Alu 1 296 -13 4833 61 0 130 chr12 101024097 101024888 -43257601 + LTR12 LTR ERV1 1 688 0 1923 152 0 10 chr12 101025515 101025825 -43256664 + AluSx SINE Alu 1 307 -5 2008 133 37 40 chr12 101026187 101026563 -43255926 - THE1C LTR MaLR 0 375 1 215 302 121 20 chr12 101026569 101026718 -43255771 - L2 LINE L2 -9 3304 3141 2205 122 0 0 chr12 101027667 101027971 -43254518 + AluSq SINE Alu 1 304 -9 2401 68 3 0 chr12 101028209 101028505 -43253984 + AluSx SINE Alu 1 297 -15 374 267 100 8 chr12 101030800 101030920 -43251569 - MIR SINE MIR 0 262 132 940 81 16 0 chr12 101031040 101031163 -43251326 + AluSq/x SINE Alu 9 133 -180 363 259 178 40 chr12 101031234 101031569 -43250920 + L1MC4a LINE L1 5491 5824 -297 1648 238 113 68 chr12 101032202 101033026 -43249463 + L1ME2 LINE L1 3325 4185 -1961 * 4400 169 69 16 chr12 101032993 101033476 -43249013 + L1MB7 LINE L1 4681 5137 -1047 2324 108 0 0 chr12 101033476 101033773 -43248716 + AluSx SINE Alu 1 297 -15 4400 169 69 16 chr12 101033773 101034714 -43247775 + L1MB7 LINE L1 5137 6165 -19 1955 133 89 3 chr12 101034738 101035076 -43247413 - Tigger7 DNA MER2_type 0 2587 2221 1592 186 64 0 chr12 101035073 101035353 -43247136 - Tigger7 DNA MER2_type -435 298 1 * 2228 214 131 72 chr12 101035361 101035436 -43247053 + L1ME2 LINE L1 4205 4274 -1872 2382 84 0 3 chr12 101035436 101035733 -43246756 + AluSp SINE Alu 5 300 -13 2228 214 131 72 chr12 101035733 101035930 -43246559 + L1ME2 LINE L1 4274 4458 -1688 2121 130 3 0 chr12 101035930 101036222 -43246267 + AluSx SINE Alu 3 295 -17 2228 214 131 72 chr12 101036222 101036372 -43246117 + L1ME2 LINE L1 4458 4598 -1548 827 129 21 0 chr12 101036372 101036512 -43245977 + L1PB2 LINE L1 6007 6149 -2 2228 214 131 72 chr12 101036512 101037250 -43245239 + L1ME2 LINE L1 4598 5392 -754 4385 189 52 35 chr12 101037266 101038325 -43244164 + L1MB3 LINE L1 4211 5316 -867 1899 157 0 3 chr12 101038325 101038612 -43243877 + AluSx SINE Alu 1 286 -26 4385 189 52 35 chr12 101038612 101039105 -43243384 + L1MB3 LINE L1 5316 5799 -384 3352 97 67 2 chr12 101039105 101039580 -43242909 - MER1A DNA MER1_type 0 529 24 1131 159 82 23 chr12 101039580 101039837 -43242652 + L1MB3 LINE L1 5911 6182 -1 2269 245 82 14 chr12 101039846 101040577 -43241912 + L1ME2 LINE L1 5392 6331 -3 1940 100 0 21 chr12 101040980 101041261 -43241228 - AluSg SINE Alu 0 310 36 246 207 0 0 chr12 101041567 101041625 -43240864 + T-rich Low_complexity Low_complexity 4 61 0 981 173 5 16 chr12 101041632 101041817 -43240672 - MER106A DNA MER1_type -2 234 52 444 284 37 18 chr12 101041857 101041966 -43240523 + L2 LINE L2 3158 3268 -4 10656 223 101 27 chr12 101042362 101046089 -43236400 - L1PA12 LINE L1 -3590 3994 1 2374 226 92 53 chr12 101046089 101047093 -43235396 - L1M4 LINE L1 -1977 4169 3127 231 153 51 17 chr12 101047103 101047162 -43235327 - L1MDa LINE L1 -5163 1377 1317 1114 249 212 11 chr12 101047181 101047596 -43234893 + L2 LINE L2 2598 2928 -385 2117 112 0 3 chr12 101047596 101047891 -43234598 - AluSx SINE Alu -18 294 1 1114 249 212 11 chr12 101047891 101048074 -43234415 + L2 LINE L2 2928 3309 -4 378 277 0 10 chr12 101048266 101048367 -43234122 + MER21B LTR ERV1 1 100 -763 1692 219 68 20 chr12 101048405 101048994 -43233495 + MER21B LTR ERV1 100 781 -82 * 1816 192 22 41 chr12 101048990 101049407 -43233082 + MLT1C LTR MaLR 59 467 0 206 196 0 39 chr12 101050279 101050330 -43232159 - MER5A DNA MER1_type 0 189 141 308 299 182 19 chr12 101051217 101051371 -43231118 + MIR3 SINE MIR 16 194 -14 1188 171 19 9 chr12 101051675 101051886 -43230603 - AluJo SINE Alu -4 308 96 195 42 0 0 chr12 101052690 101052714 -43229775 + (CA)n Simple_repeat Simple_repeat 2 25 0 299 317 32 32 chr12 101053762 101053885 -43228604 - MIR SINE MIR -70 138 16 186 71 0 0 chr12 101054412 101054440 -43228049 + (A)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr12 101056716 101056739 -43225750 + AT_rich Low_complexity Low_complexity 1 23 0 219 313 0 0 chr12 101057852 101057919 -43224570 + L2 LINE L2 3246 3312 -1 602 165 0 28 chr12 101058193 101058302 -43224187 - FLAM_A SINE Alu -8 134 29 341 421 68 12 chr12 101059458 101060050 -43222439 - L2 LINE L2 -2474 840 216 2153 81 0 4 chr12 101060322 101060594 -43221895 - AluSp SINE Alu -4 309 39 465 264 45 0 chr12 101060609 101060719 -43221770 - L2 LINE L2 -7 3306 3192 874 213 10 19 chr12 101060720 101060927 -43221562 + MER3 DNA MER1_type 1 205 -4 2250 110 0 0 chr12 101061803 101062103 -43220386 - AluSx SINE Alu -12 300 1 235 191 32 16 chr12 101062207 101062270 -43220219 + GA-rich Low_complexity Low_complexity 5 68 0 444 225 58 43 chr12 101062287 101062425 -43220064 + MLT1K LTR MaLR 444 583 -5 23 0 0 0 chr12 101062521 101062544 -43219945 + AT_rich Low_complexity Low_complexity 1 23 0 223 391 103 25 chr12 101063023 101063136 -43219353 + L3b LINE CR1 1115 1218 -365 180 0 0 0 chr12 101063136 101063156 -43219333 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 223 391 103 25 chr12 101063156 101063477 -43219012 + L3b LINE CR1 1218 1583 0 25 31 0 0 chr12 101063963 101063995 -43218494 + AT_rich Low_complexity Low_complexity 1 32 0 9098 22 1 1 chr12 101064196 101065741 -43216748 - L1PA4 LINE L1 -302 5853 4309 8729 29 4 0 chr12 101065741 101066787 -43215702 + L1PA4 LINE L1 3266 4315 -1831 1457 143 68 39 chr12 101066825 101067104 -43215385 + AluJo SINE Alu 9 295 -17 2265 162 160 4 chr12 101067125 101067632 -43214857 - Charlie1 DNA MER1_type -497 2264 1679 918 190 40 0 chr12 101067632 101067806 -43214683 + MER5A DNA MER1_type 7 187 -2 656 196 35 98 chr12 101067822 101067870 -43214619 + MER5B DNA MER1_type 1 50 -128 1692 184 0 29 chr12 101067870 101068185 -43214304 - AluJb SINE Alu -6 306 1 656 196 35 98 chr12 101068185 101068309 -43214180 + MER5B DNA MER1_type 50 162 -16 690 240 100 8 chr12 101068684 101068934 -43213555 - MER20B DNA MER1_type -1 782 510 2669 187 74 127 chr12 101068944 101069058 -43213431 - L1MC5 LINE L1 -44 7917 7799 817 241 16 5 chr12 101069058 101069245 -43213244 + MER5A DNA MER1_type 1 189 0 2669 187 74 127 chr12 101069245 101070496 -43211993 - L1MC5 LINE L1 -162 7799 6624 2174 114 0 13 chr12 101070501 101070807 -43211682 - AluSc SINE Alu -7 302 1 2017 229 78 55 chr12 101071319 101072375 -43210114 + L1ME3 LINE L1 4960 6040 -122 920 266 73 47 chr12 101072403 101072869 -43209620 + L1ME3A LINE L1 5693 6170 0 2346 100 0 0 chr12 101073222 101073521 -43208968 - AluSc SINE Alu -10 299 1 832 200 38 0 chr12 101073529 101073689 -43208800 - FRAM SINE Alu 0 166 1 850 204 0 12 chr12 101074988 101075150 -43207339 - FRAM SINE Alu -17 159 1 3371 175 48 13 chr12 101075412 101076035 -43206454 - MER21B LTR ERV1 -17 846 202 670 251 37 34 chr12 101076225 101076630 -43205859 + MLT1C LTR MaLR 23 467 0 369 372 123 20 chr12 101076630 101076923 -43205566 - L3 LINE CR1 -59 1518 1196 392 242 13 87 chr12 101077261 101077357 -43205132 + MIR SINE MIR 124 207 -55 1288 204 42 25 chr12 101077357 101077642 -43204847 + AluJo SINE Alu 1 290 -22 392 242 13 87 chr12 101077642 101077694 -43204795 + MIR SINE MIR 207 261 -1 1835 137 14 0 chr12 101078117 101078394 -43204095 + AluSx SINE Alu 2 282 -30 1398 262 62 47 chr12 101078870 101079282 -43203207 - L1MEc LINE L1 -4948 1448 1021 2225 94 0 19 chr12 101079282 101079591 -43202898 - AluY SINE Alu -8 303 1 1398 262 62 47 chr12 101079591 101079853 -43202636 - L1MEc LINE L1 -5375 1021 764 551 120 0 0 chr12 101079855 101079981 -43202508 - AluSp/q SINE Alu 0 333 208 2337 253 76 6 chr12 101079982 101080666 -43201823 - L1MEc LINE L1 -5631 765 34 471 237 57 90 chr12 101080707 101080986 -43201503 - L1MC5 LINE L1 -83 7878 7609 197 298 6 124 chr12 101081145 101081306 -43201183 + L2 LINE L2 2607 2748 -566 35 54 0 0 chr12 101081484 101081540 -43200949 + AT_rich Low_complexity Low_complexity 1 56 0 236 250 33 0 chr12 101082124 101082184 -43200305 + MIR SINE MIR 172 233 -29 373 257 73 9 chr12 101082368 101082477 -43200012 - L2 LINE L2 -2 3311 3196 381 232 134 9 chr12 101083125 101083237 -43199252 + L2 LINE L2 2722 2847 -467 1699 98 4 8 chr12 101083308 101083542 -43198947 - AluSg/x SINE Alu -8 304 72 348 260 35 35 chr12 101083645 101083814 -43198675 - L1M4 LINE L1 -3628 2518 2350 628 229 39 81 chr12 101083820 101084031 -43198458 - LTR23-int LTR ERV1 -1522 3358 2343 * 849 168 75 178 chr12 101084012 101084601 -43197888 - LTR23-int LTR ERV1 -6077 2043 1516 2336 146 18 0 chr12 101084712 101085095 -43197394 - Tigger1 DNA MER2_type -56 2362 1973 414 57 0 0 chr12 101085501 101085554 -43196935 + (TG)n Simple_repeat Simple_repeat 2 54 0 193 286 0 0 chr12 101085721 101085770 -43196719 + L2 LINE L2 3255 3303 -10 2298 81 0 3 chr12 101086222 101086520 -43195969 + AluSx SINE Alu 1 297 -15 1260 102 17 0 chr12 101086520 101086696 -43195793 + AluSg/x SINE Alu 132 310 0 23 68 0 0 chr12 101087170 101087214 -43195275 + AT_rich Low_complexity Low_complexity 1 44 0 249 324 27 34 chr12 101088390 101088538 -43193951 - L3 LINE CR1 -2 1575 1429 392 208 31 25 chr12 101088836 101088960 -43193529 + L1MEc LINE L1 2387 2498 -3717 310 284 99 7 chr12 101088968 101089109 -43193380 + MIR SINE MIR 90 243 -19 304 220 250 0 chr12 101089123 101089223 -43193266 + L2 LINE L2 3187 3311 -2 1078 239 21 90 chr12 101089524 101089913 -43192576 + L2 LINE L2 2952 3313 0 736 266 102 41 chr12 101090089 101090431 -43192058 - MARNA DNA Mariner -42 544 182 30 0 0 0 chr12 101091326 101091356 -43191133 + AT_rich Low_complexity Low_complexity 1 30 0 1249 197 31 80 chr12 101092411 101092700 -43189789 - AluJo SINE Alu -37 275 1 4601 56 16 15 chr12 101092751 101093781 -43188708 - MER11A LTR ERVK 0 1266 1 197 356 14 0 chr12 101093781 101093854 -43188635 - MIR SINE MIR -105 103 30 2052 126 3 3 chr12 101094604 101094912 -43187577 - AluSx SINE Alu 0 308 1 250 211 53 26 chr12 101095616 101095692 -43186797 + MER116 DNA Mariner 2 79 -1 1198 219 17 13 chr12 101095704 101095942 -43186547 - MER8 DNA MER2_type 0 239 1 471 293 139 9 chr12 101096811 101097026 -43185463 - MIR SINE MIR 0 262 20 310 229 160 30 chr12 101099113 101099244 -43183245 - MIR SINE MIR -50 212 65 314 259 25 12 chr12 101100104 101100185 -43182304 - L1MC/D LINE L1 -2206 5602 5521 809 239 54 82 chr12 101100305 101100506 -43181983 - MER20B DNA MER1_type -287 496 308 2149 111 0 3 chr12 101100506 101100803 -43181686 - AluSc SINE Alu -13 296 1 809 239 54 82 chr12 101100803 101100953 -43181536 - MER20B DNA MER1_type -475 308 155 708 243 84 158 chr12 101100959 101101458 -43181031 + LTR16B LTR ERVL 1 462 -2 555 348 31 4 chr12 101101463 101101690 -43180799 + HERV16 LTR ERVL 6 238 -4758 1958 330 54 19 chr12 101101993 101103191 -43179298 + ERVL LTR ERVL 1786 3068 -1928 * 2452 341 30 16 chr12 101103190 101104347 -43178142 + ERVL LTR ERVL 4174 5346 -418 1280 241 85 5 chr12 101105317 101105741 -43176748 - L1MC/D LINE L1 -1431 4715 4258 14256 197 39 11 chr12 101105830 101109587 -43172902 - L1PA13 LINE L1 -11 6152 2278 210 231 33 11 chr12 101109675 101109766 -43172723 + CT-rich Low_complexity Low_complexity 5 97 0 1888 121 7 7 chr12 101109905 101110187 -43172302 + AluY SINE Alu 26 307 -4 2458 68 0 13 chr12 101110624 101110932 -43171557 - AluY SINE Alu -7 304 1 1701 187 24 24 chr12 101111004 101111335 -43171154 + MLT1B LTR MaLR 60 390 0 453 243 47 79 chr12 101111359 101111573 -43170916 + L1 LINE L1 2901 3107 -3039 782 205 88 13 chr12 101111590 101112407 -43170082 + L1ME LINE L1 4232 5143 -1003 397 125 0 0 chr12 101112439 101112495 -43169994 + MER21A LTR ERV1 13 68 -863 1837 183 32 160 chr12 101112608 101113185 -43169304 + MER21A LTR ERV1 70 720 -211 2267 104 3 10 chr12 101113185 101113492 -43168997 - AluSx SINE Alu -7 305 1 1837 183 32 160 chr12 101113492 101113526 -43168963 + MER21A LTR ERV1 720 757 -174 620 78 0 0 chr12 101113526 101113603 -43168886 + Alu SINE Alu 222 298 -14 1837 183 32 160 chr12 101113603 101113957 -43168532 + MER21A LTR ERV1 757 903 -28 1142 189 19 53 chr12 101113983 101114248 -43168241 + L1M4 LINE L1 313 568 -6281 1871 155 3 7 chr12 101114400 101114704 -43167785 + AluSq SINE Alu 1 303 -10 429 285 62 0 chr12 101114726 101114856 -43167633 + L1ME LINE L1 5563 5700 -421 207 298 202 0 chr12 101114865 101114989 -43167500 - L2 LINE L2 -6 3307 3159 818 169 0 0 chr12 101115001 101115119 -43167370 + FLAM_C SINE Alu 1 118 -15 2800 218 76 27 chr12 101115149 101115555 -43166934 + L1M4 LINE L1 5204 5589 -1259 195 42 0 0 chr12 101115555 101115579 -43166910 + (CA)n Simple_repeat Simple_repeat 1 24 0 2800 218 76 27 chr12 101115579 101115992 -43166497 + L1M4 LINE L1 5589 6063 -785 4020 152 50 19 chr12 101116009 101116713 -43165776 + MER6 DNA MER2_type 130 855 -10 2178 126 0 0 chr12 101116714 101117015 -43165474 + AluSc SINE Alu 1 301 -8 484 189 27 9 chr12 101117046 101117157 -43165332 + L1M4c LINE L1 1253 1365 -5019 2099 109 21 0 chr12 101117708 101117991 -43164498 - AluSx SINE Alu -23 289 1 315 190 0 0 chr12 101118321 101118379 -43164110 + AluS SINE Alu 1 58 -245 204 200 0 0 chr12 101118799 101118849 -43163640 + GA-rich Low_complexity Low_complexity 2 51 0 794 296 78 37 chr12 101118854 101119263 -43163226 + LTR16B LTR ERVL 36 461 -3 283 267 29 29 chr12 101119267 101119372 -43163117 - MER20B DNA MER1_type -632 151 47 198 240 0 40 chr12 101119447 101119497 -43162992 - MIR SINE MIR -122 140 93 586 188 8 38 chr12 101119849 101119982 -43162507 - FLAM_C SINE Alu -4 129 1 2194 125 0 6 chr12 101120376 101120689 -43161800 - AluSx SINE Alu -1 311 1 469 261 85 12 chr12 101121430 101121595 -43160894 - MIR SINE MIR -2 260 84 1537 289 155 28 chr12 101121614 101122177 -43160312 + L2 LINE L2 1963 2453 -860 1985 173 96 8 chr12 101122177 101122541 -43159948 - MSTD LTR MaLR 0 396 1 1537 289 155 28 chr12 101122541 101122960 -43159529 + L2 LINE L2 2453 3073 -240 194 0 39 0 chr12 101122992 101123018 -43159471 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 611 110 0 0 chr12 101123037 101123119 -43159370 - FLAM_A SINE Alu -38 104 23 330 272 132 9 chr12 101123159 101123273 -43159216 + L2 LINE L2 3186 3313 0 1075 219 61 78 chr12 101123418 101123812 -43158677 + MER39 LTR ERV1 167 697 -10 4794 106 0 28 chr12 101125177 101125728 -43156761 - MER41B LTR ERV1 0 635 103 2279 109 3 0 chr12 101125728 101126030 -43156459 + AluSg SINE Alu 1 303 -7 4794 106 0 28 chr12 101126030 101126131 -43156358 - MER41B LTR ERV1 -532 103 1 315 296 36 85 chr12 101126318 101126565 -43155924 + L1ME LINE L1 5333 5567 -554 3374 170 65 39 chr12 101126582 101127258 -43155231 + LTR8A LTR ERV1 34 727 0 394 219 25 2 chr12 101127321 101127421 -43155068 + L1ME3A LINE L1 5475 5570 -592 1820 171 0 19 chr12 101127421 101127633 -43154856 - AluJb SINE Alu -8 304 98 5117 93 2 0 chr12 101127633 101128267 -43154222 + MER41B LTR ERV1 1 635 0 1820 171 0 19 chr12 101128267 101128364 -43154125 - AluJb SINE Alu -214 98 1 615 248 90 9 chr12 101128371 101128669 -43153820 + L1ME3A LINE L1 5562 5916 -254 977 210 104 99 chr12 101128669 101129216 -43153273 + MER34C LTR ERV1 36 585 0 1933 150 24 0 chr12 101129328 101129621 -43152868 - AluSx SINE Alu -12 300 1 570 118 117 1 chr12 101129635 101129746 -43152743 - LTR48 LTR ERV1 -47 740 435 2391 96 0 0 chr12 101129758 101130061 -43152428 - AluSg SINE Alu -7 303 1 451 202 32 21 chr12 101130061 101130155 -43152334 - Tigger7 DNA MER2_type -608 97 3 252 100 0 0 chr12 101130566 101130606 -43151883 + (A)n Simple_repeat Simple_repeat 1 40 0 530 319 87 4 chr12 101130836 101131077 -43151412 - MIR SINE MIR -1 261 1 201 147 0 0 chr12 101131617 101131651 -43150838 + (T)n Simple_repeat Simple_repeat 1 34 0 2345 87 3 31 chr12 101132116 101132437 -43150052 + AluSx SINE Alu 1 312 0 2019 100 4 4 chr12 101133166 101133437 -43149052 - AluSx SINE Alu -19 293 23 423 175 165 0 chr12 101133447 101133544 -43148945 - L2 LINE L2 -19 3294 3182 741 311 153 37 chr12 101134292 101134660 -43147829 + L2 LINE L2 1619 1943 -1371 947 107 28 11 chr12 101134660 101134837 -43147652 + CT-rich Low_complexity Low_complexity 1 180 0 2126 94 45 0 chr12 101134843 101135129 -43147360 - AluSx SINE Alu -13 299 1 741 311 153 37 chr12 101135129 101135904 -43146585 + L2 LINE L2 1947 2902 -412 2165 123 10 3 chr12 101136251 101136553 -43145936 + AluSx SINE Alu 1 304 -8 337 259 114 48 chr12 101137066 101137232 -43145257 - MIR SINE MIR -36 226 50 593 221 50 67 chr12 101137425 101137667 -43144822 + L1ME3A LINE L1 5458 5693 -477 2726 194 49 19 chr12 101137683 101138214 -43144275 + MER77 LTR ERV1 53 599 -6 1183 204 100 0 chr12 101138214 101138577 -43143912 + L1ME3A LINE L1 5677 6165 -5 212 314 0 0 chr12 101138605 101138656 -43143833 + polypurine Low_complexity Low_complexity 2 52 0 2949 200 51 25 chr12 101138669 101139318 -43143171 + L1ME1 LINE L1 5497 6162 -4 995 223 32 36 chr12 101139801 101140052 -43142437 - MIR SINE MIR 0 262 13 325 212 19 104 chr12 101140117 101140326 -43142163 - MER112 DNA MER1_type -10 250 6 444 241 62 18 chr12 101141106 101141218 -43141271 - MLT1J2 LTR MaLR -130 320 204 756 204 111 64 chr12 101141758 101141993 -43140496 + L1ME3 LINE L1 5917 6162 0 1540 129 36 8 chr12 101142039 101142287 -43140202 - MSTB LTR MaLR 0 426 172 1127 135 0 0 chr12 101142287 101142457 -43140032 - AluSg/x SINE Alu -9 301 132 2085 100 0 42 chr12 101142457 101142767 -43139722 - AluSg SINE Alu -13 297 1 1095 118 51 11 chr12 101142767 101142945 -43139544 - MSTB LTR MaLR -240 186 2 444 284 45 8 chr12 101143148 101143282 -43139207 + MIR SINE MIR 3 141 -121 2650 148 24 2 chr12 101143347 101143766 -43138723 + MSTA LTR MaLR 1 428 0 270 333 69 58 chr12 101143986 101144212 -43138277 + MIR3 SINE MIR 1 242 -20 4020 106 46 14 chr12 101144405 101145038 -43137451 - L1MA8 LINE L1 -271 6020 5368 249 310 46 0 chr12 101145835 101145922 -43136567 + MLT1L LTR MaLR 200 290 -325 257 86 0 0 chr12 101146097 101146132 -43136357 + MER21B LTR ERV1 1 35 -828 3454 153 43 14 chr12 101146186 101146529 -43135960 + MER21B LTR ERV1 133 500 -363 2803 87 0 6 chr12 101146529 101146895 -43135594 - THE1B LTR MaLR 0 364 1 3454 153 43 14 chr12 101146895 101147108 -43135381 + MER21B LTR ERV1 500 705 -158 395 262 168 0 chr12 101147141 101147248 -43135241 - L2 LINE L2 -1 3312 3188 200 333 222 13 chr12 101147262 101147415 -43135074 + L2 LINE L2 2289 2473 -841 230 272 193 10 chr12 101147606 101147808 -43134681 - L2 LINE L2 -1215 2099 1861 599 275 149 18 chr12 101147861 101148137 -43134352 + MLT1K LTR MaLR 27 338 -250 182 282 39 19 chr12 101148340 101148443 -43134046 + L2 LINE L2 2934 3038 -234 1866 144 47 0 chr12 101149131 101149430 -43133059 + 7SLRNA srpRNA srpRNA 1 313 -7 2315 97 0 0 chr12 101149436 101149746 -43132743 + AluSg SINE Alu 1 310 0 26 0 0 0 chr12 101149759 101149785 -43132704 + AT_rich Low_complexity Low_complexity 1 26 0 2935 271 48 71 chr12 101149839 101150691 -43131798 + L2 LINE L2 1875 2745 -568 2825 176 16 52 chr12 101150691 101151265 -43131224 - MLT2B3 LTR ERVL 0 554 2 2935 271 48 71 chr12 101151265 101151276 -43131213 + L2 LINE L2 2745 2755 -558 1632 144 21 69 chr12 101151276 101151610 -43130879 + L1MB3 LINE L1 5825 6141 -42 2207 73 7 20 chr12 101151610 101151911 -43130578 + AluSc SINE Alu 1 297 -12 1632 144 21 69 chr12 101151911 101151952 -43130537 + L1MB3 LINE L1 6141 6182 -1 2935 271 48 71 chr12 101151952 101152525 -43129964 + L2 LINE L2 2755 3298 -15 186 43 0 0 chr12 101152529 101152552 -43129937 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2622 137 41 14 chr12 101152582 101152997 -43129492 - MSTB LTR MaLR 0 426 1 225 293 32 65 chr12 101153258 101153381 -43129108 - LTR16C LTR ERVL -2 489 371 624 209 5 31 chr12 101153401 101153620 -43128869 - L1M4 LINE L1 -6284 258 2 556 224 178 19 chr12 101153622 101153886 -43128603 - L1ME4a LINE L1 -218 5903 5598 458 244 85 77 chr12 101154035 101154281 -43128208 - MLT1L LTR MaLR -143 472 225 327 138 46 31 chr12 101154430 101154495 -43127994 - MLT1G1 LTR MaLR -16 579 514 23 68 0 0 chr12 101154592 101154636 -43127853 + AT_rich Low_complexity Low_complexity 1 44 0 505 165 0 0 chr12 101155669 101155748 -43126741 - AluJ/FLAM SINE Alu -228 84 6 333 251 165 35 chr12 101155752 101155837 -43126652 - L1ME4a LINE L1 -2266 5542 5469 2089 116 0 7 chr12 101155837 101156138 -43126351 + AluSx SINE Alu 1 299 -13 333 251 165 35 chr12 101156138 101156307 -43126182 - L1ME4a LINE L1 -2339 5469 5255 347 169 161 51 chr12 101157045 101157106 -43125383 - MER69 DNA AcHobo -10 2516 2463 1240 170 13 95 chr12 101157106 101157423 -43125066 + AluJo SINE Alu 1 291 -21 347 169 161 51 chr12 101157423 101157479 -43125010 - MER69 DNA AcHobo -63 2463 2386 1993 96 3 75 chr12 101157479 101157801 -43124688 + AluSq SINE Alu 1 299 -14 536 161 0 0 chr12 101157801 101157882 -43124607 + MLT1D LTR MaLR 115 195 -310 869 190 0 29 chr12 101157882 101158056 -43124433 + FRAM SINE Alu 1 169 -7 854 234 142 2 chr12 101158081 101158306 -43124183 + MLT1D LTR MaLR 219 505 0 2453 143 13 0 chr12 101158375 101158760 -43123729 + MLT1B LTR MaLR 1 390 0 332 123 68 27 chr12 101158871 101158944 -43123545 - Charlie8 DNA MER1_type 0 2417 2342 2170 101 48 114 chr12 101158958 101159413 -43123076 + MSTA LTR MaLR 1 425 -3 573 231 82 39 chr12 101159616 101159824 -43122665 - Charlie8 DNA MER1_type -2140 277 61 3740 140 26 71 chr12 101159824 101160455 -43122034 + L1MB3 LINE L1 5445 6036 -147 2256 91 0 3 chr12 101160455 101160753 -43121736 + AluSx SINE Alu 1 297 -15 3740 140 26 71 chr12 101160753 101160893 -43121596 + L1MB3 LINE L1 6036 6181 -2 201 274 16 32 chr12 101161022 101161084 -43121405 + L2 LINE L2 3167 3227 -86 795 203 41 43 chr12 101163497 101163731 -43118758 - MLT1L LTR MaLR -63 552 236 22 0 0 0 chr12 101165478 101165500 -43116989 + AT_rich Low_complexity Low_complexity 1 22 0 203 322 190 42 chr12 101166100 101166594 -43115895 - L2 LINE L2 -685 2629 2063 726 249 145 44 chr12 101166789 101167104 -43115385 + MLT1L LTR MaLR 196 549 -66 2413 72 0 0 chr12 101167104 101167409 -43115080 + AluSq SINE Alu 1 305 -8 726 249 145 44 chr12 101167409 101167431 -43115058 + MLT1L LTR MaLR 549 567 -48 288 246 93 25 chr12 101168495 101168518 -43113971 + MLT1L LTR MaLR 485 505 -110 1902 140 0 31 chr12 101168518 101168840 -43113649 - AluSx SINE Alu 0 312 1 288 246 93 25 chr12 101168840 101168934 -43113555 + MLT1L LTR MaLR 505 610 -5 435 289 118 49 chr12 101168989 101169294 -43113195 + L1ME4a LINE L1 5709 6034 -87 2167 102 0 13 chr12 101169340 101169653 -43112836 - AluSg SINE Alu 0 310 2 340 220 59 17 chr12 101169760 101169878 -43112611 + L1ME4a LINE L1 5998 6120 -1 703 225 43 2 chr12 101170287 101170508 -43111981 + L1MC4a LINE L1 6447 6610 -1198 758 240 104 0 chr12 101170513 101170696 -43111793 - MLT1A2 LTR MaLR 0 374 173 296 143 26 85 chr12 101170970 101171159 -43111330 + (CACAA)n Simple_repeat Simple_repeat 2 179 0 480 127 0 0 chr12 101171167 101171238 -43111251 + (A)n Simple_repeat Simple_repeat 1 71 0 261 0 0 0 chr12 101171253 101171282 -43111207 + (CA)n Simple_repeat Simple_repeat 2 30 0 279 259 127 39 chr12 101171329 101171588 -43110901 + L1MC4a LINE L1 5889 6170 -1638 1426 162 55 4 chr12 101171733 101171986 -43110503 + AluJo SINE Alu 13 278 -34 9722 86 14 0 chr12 101171986 101173225 -43109264 + THE1B-int LTR MaLR 324 1580 0 2114 129 36 36 chr12 101173225 101173589 -43108900 + THE1B LTR MaLR 1 364 0 2299 224 53 19 chr12 101173676 101174204 -43108285 - MER77 LTR ERV1 -5 600 55 405 111 0 56 chr12 101174316 101174406 -43108083 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 1619 161 13 23 chr12 101174406 101174716 -43107773 - AluJb SINE Alu 0 312 6 425 296 68 42 chr12 101174723 101175030 -43107459 - HAL1b LINE L1 0 1348 1050 2769 137 73 23 chr12 101175097 101175489 -43107000 - MER84 LTR ERVI 0 507 84 1748 132 21 7 chr12 101175489 101175798 -43106691 - AluSq SINE Alu 0 313 1 2769 137 73 23 chr12 101175798 101175886 -43106603 - MER84 LTR ERVI -423 84 2 421 156 26 13 chr12 101175886 101175959 -43106530 - MER84 LTR ERVI -433 74 1 396 186 350 31 chr12 101176146 101176340 -43106149 + LTR48 LTR ERV1 163 418 -369 634 101 11 0 chr12 101176344 101176433 -43106056 + AluJ/FLAM SINE Alu 5 94 -218 739 253 63 11 chr12 101176433 101176607 -43105882 + LTR18A LTR ERVL 1 183 -174 603 188 288 32 chr12 101176649 101176899 -43105590 + LTR18B LTR ERVL 269 582 -32 683 211 183 14 chr12 101176899 101177107 -43105382 + AluJo SINE Alu 63 305 -7 733 102 10 0 chr12 101177208 101177306 -43105183 + AluSg SINE Alu 2 100 -210 198 267 0 17 chr12 101178636 101178696 -43103793 + MIR SINE MIR 87 145 -117 1739 145 28 0 chr12 101178816 101179098 -43103391 + AluJb SINE Alu 1 290 -22 186 71 0 0 chr12 101179113 101179141 -43103348 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 1885 211 92 13 chr12 101179420 101179885 -43102604 + MLT1D LTR MaLR 2 503 -2 375 271 93 23 chr12 101179974 101180103 -43102386 + MIR SINE MIR 16 153 -55 642 269 182 55 chr12 101181573 101181974 -43100515 + L2 LINE L2 2854 3305 -8 975 290 39 39 chr12 101182020 101182147 -43100342 - L1MC4a LINE L1 -1755 6053 5927 2147 118 0 0 chr12 101182147 101182453 -43100036 - AluSx SINE Alu -6 306 1 975 290 39 39 chr12 101182453 101182784 -43099705 - L1MC4a LINE L1 -1880 5928 5595 374 172 0 0 chr12 101182900 101182958 -43099531 - MER39 LTR ERV1 -649 58 1 349 320 29 41 chr12 101182980 101183152 -43099337 - L1MC4a LINE L1 -1198 4948 4779 303 109 0 0 chr12 101183283 101183291 -43099198 + (GGAA)n Simple_repeat Simple_repeat 4 11 -47 1757 152 3 3 chr12 101183291 101183581 -43098908 + AluSx SINE Alu 1 290 -22 303 109 0 0 chr12 101183581 101183627 -43098862 + (GGAA)n Simple_repeat Simple_repeat 10 58 0 190 351 13 0 chr12 101185052 101185129 -43097360 + MIR SINE MIR 11 88 -174 195 42 0 0 chr12 101185130 101185154 -43097335 + (TTG)n Simple_repeat Simple_repeat 3 26 0 2021 124 0 0 chr12 101185158 101185440 -43097049 - AluSx SINE Alu -30 282 1 589 291 39 16 chr12 101185443 101185625 -43096864 + MIR SINE MIR 77 262 0 26 23 0 23 chr12 101185858 101185889 -43096600 + AT_rich Low_complexity Low_complexity 1 32 -11 1328 157 95 47 chr12 101185889 101186163 -43096326 + AluJo SINE Alu 1 287 -25 26 23 0 23 chr12 101186163 101186175 -43096314 + AT_rich Low_complexity Low_complexity 32 43 0 2026 113 0 13 chr12 101186175 101186476 -43096013 + AluSx SINE Alu 1 297 -15 2356 74 3 0 chr12 101186479 101186821 -43095668 + AluY SINE Alu 1 311 0 992 173 0 0 chr12 101187278 101187451 -43095038 + AluSg/x SINE Alu 136 308 -4 1425 204 11 4 chr12 101187475 101187755 -43094734 - AluJo SINE Alu -30 282 1 1104 227 31 87 chr12 101187770 101188115 -43094374 - L1MC5 LINE L1 -821 6987 6803 2182 115 3 10 chr12 101188115 101188429 -43094060 - AluSx SINE Alu 0 312 1 1104 227 31 87 chr12 101188429 101188674 -43093815 - L1MC5 LINE L1 -1005 6803 6546 821 163 0 0 chr12 101188698 101188827 -43093662 - FLAM_C SINE Alu -12 131 3 515 293 164 38 chr12 101189029 101189528 -43092961 - HAL1b LINE L1 -493 855 294 412 84 14 14 chr12 101189555 101189626 -43092863 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 279 0 0 0 chr12 101189624 101189655 -43092834 + (TC)n Simple_repeat Simple_repeat 1 31 0 * 2072 132 10 0 chr12 101189655 101189950 -43092539 - AluSx SINE Alu -20 292 1 446 294 51 124 chr12 101189952 101190241 -43092248 - HAL1 LINE L1 -1160 1347 1094 23 0 0 0 chr12 101190241 101190264 -43092225 + AT_rich Low_complexity Low_complexity 1 23 0 446 294 51 124 chr12 101190264 101190516 -43091973 - HAL1 LINE L1 -1413 1094 825 305 228 119 10 chr12 101192712 101192813 -43089676 + MIR SINE MIR 23 134 -128 2912 235 88 78 chr12 101195590 101195741 -43086748 + MER69B DNA AcHobo 1 149 -2377 741 167 0 8 chr12 101195741 101195890 -43086599 + FLAM_A SINE Alu 1 148 0 2912 235 88 78 chr12 101195890 101196110 -43086379 + MER69B DNA AcHobo 149 365 -2161 2266 110 0 3 chr12 101196110 101196409 -43086080 + AluSx SINE Alu 1 298 -14 2912 235 88 78 chr12 101196409 101197124 -43085365 + MER69B DNA AcHobo 365 1105 -1421 2558 58 0 10 chr12 101197124 101197432 -43085057 - AluY SINE Alu -6 305 1 2912 235 88 78 chr12 101197432 101197502 -43084987 + MER69B DNA AcHobo 1105 1173 -53 2401 85 0 13 chr12 101198070 101198376 -43084113 - AluY SINE Alu -9 302 1 1641 151 68 7 chr12 101198709 101198867 -43083622 - AluJb SINE Alu -17 295 148 189 0 0 0 chr12 101198867 101198888 -43083601 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1641 151 68 7 chr12 101198888 101199007 -43083482 - AluJb SINE Alu -164 148 1 225 0 0 0 chr12 101199062 101199087 -43083402 + (TG)n Simple_repeat Simple_repeat 2 26 0 2372 80 3 3 chr12 101199582 101199882 -43082607 + AluSc SINE Alu 1 300 -9 2014 133 7 7 chr12 101199896 101200190 -43082299 + AluJb SINE Alu 5 298 -14 2156 132 45 12 chr12 101200303 101200636 -43081853 - MER2 DNA MER2_type 0 344 1 253 297 84 13 chr12 101201436 101201591 -43080898 - L1MC/D LINE L1 -1915 5893 5728 1116 204 99 129 chr12 101201781 101202036 -43080453 + MER39 LTR ERV1 219 480 -227 2103 92 7 31 chr12 101202036 101202330 -43080159 - AluSq SINE Alu -26 287 1 1116 204 99 129 chr12 101202330 101202479 -43080010 + MER39 LTR ERV1 480 608 -99 1956 151 0 41 chr12 101202479 101202624 -43079865 + AluJb SINE Alu 1 150 -162 2085 142 0 10 chr12 101202624 101202926 -43079563 + AluSx SINE Alu 1 299 -13 1956 151 0 41 chr12 101202926 101203098 -43079391 + AluJb SINE Alu 150 305 -7 1116 204 99 129 chr12 101203098 101203187 -43079302 + MER39 LTR ERV1 608 698 -9 421 217 102 90 chr12 101203466 101203710 -43078779 + MLT1H LTR MaLR 321 549 0 317 274 33 51 chr12 101203766 101203981 -43078508 + L1MC4 LINE L1 5256 5466 -2342 2783 158 25 4 chr12 101204143 101204673 -43077816 + L1 LINE L1 4319 4859 -1287 22 70 0 0 chr12 101204871 101204914 -43077575 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr12 101204964 101204994 -43077495 + AT_rich Low_complexity Low_complexity 1 30 0 775 280 62 23 chr12 101205046 101205303 -43077186 - L1MC4 LINE L1 -143 7899 7633 1837 115 0 22 chr12 101205419 101205688 -43076801 - AluSx SINE Alu -49 263 1 914 173 6 6 chr12 101205694 101205856 -43076633 - MLT1A2 LTR MaLR -212 162 1 610 248 93 15 chr12 101205898 101206563 -43075926 + L1MC4 LINE L1 6676 7540 -502 297 225 42 66 chr12 101207400 101207521 -43074968 - L1ME LINE L1 -329 5833 5714 211 271 85 0 chr12 101207631 101207690 -43074799 - L2 LINE L2 -28 3285 3222 232 320 70 0 chr12 101207690 101207790 -43074699 - L1ME LINE L1 -2256 5552 5446 602 230 0 0 chr12 101208515 101208641 -43073848 - L1MD2 LINE L1 -10 6349 6224 243 278 31 0 chr12 101208641 101208738 -43073751 - L1ME LINE L1 -2415 5393 5294 2540 233 101 7 chr12 101208823 101209408 -43073081 - MLT1E1 LTR MaLR -8 646 7 2335 81 10 19 chr12 101209899 101210206 -43072283 + AluSx SINE Alu 1 304 -8 2243 113 10 6 chr12 101211622 101211933 -43070556 + AluSx SINE Alu 1 312 0 1676 150 12 0 chr12 101212728 101213014 -43069475 - AluSx SINE Alu 0 317 29 1655 214 31 3 chr12 101213553 101213909 -43068580 - L1ME1 LINE L1 -5 6161 5796 2118 133 22 69 chr12 101214184 101214590 -43067899 - MLT1B LTR MaLR 0 390 4 1961 112 0 47 chr12 101214825 101215145 -43067344 + AluSx SINE Alu 2 307 0 403 271 29 36 chr12 101215320 101215460 -43067029 - MIR SINE MIR -112 150 12 1971 128 38 7 chr12 101215592 101215881 -43066608 - AluSx SINE Alu -14 298 1 340 224 155 0 chr12 101216346 101216462 -43066027 - L2 LINE L2 -38 3234 3101 1171 251 229 22 chr12 101217896 101218544 -43063945 - L2 LINE L2 -3 3310 2518 264 248 59 59 chr12 101218600 101218701 -43063788 + MIR SINE MIR 28 128 -134 1936 127 22 4 chr12 101218709 101218977 -43063512 + AluSx SINE Alu 1 273 -39 198 0 0 0 chr12 101218988 101219010 -43063479 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2170 106 73 22 chr12 101219573 101219930 -43062559 + THE1C LTR MaLR 1 375 0 2249 114 0 19 chr12 101220253 101220560 -43061929 - AluSx SINE Alu -11 301 1 545 157 19 19 chr12 101220579 101220687 -43061802 + MLT1C LTR MaLR 1 108 -359 2282 96 3 7 chr12 101220706 101221008 -43061481 - AluSq SINE Alu -12 301 1 311 169 123 0 chr12 101221009 101221074 -43061415 - L1MB7 LINE L1 -121 6063 5991 2393 146 55 40 chr12 101221079 101221140 -43061349 - L1MB7 LINE L1 -326 5858 5799 2061 115 10 14 chr12 101221140 101221436 -43061053 - AluSx SINE Alu -17 295 1 2393 146 55 40 chr12 101221436 101221847 -43060642 - L1MB7 LINE L1 -385 5799 5390 24 0 0 0 chr12 101221887 101221911 -43060578 + AT_rich Low_complexity Low_complexity 1 24 0 219 286 238 0 chr12 101222454 101222580 -43059909 + MIR SINE MIR 101 256 -6 21 0 0 0 chr12 101223027 101223048 -43059441 + AT_rich Low_complexity Low_complexity 1 21 0 315 275 50 23 chr12 101224082 101224224 -43058265 + MIR SINE MIR 1 145 -63 2294 113 0 0 chr12 101225279 101225588 -43056901 + AluSx SINE Alu 1 309 -3 995 123 0 0 chr12 101225616 101225746 -43056743 - FLAM_C SINE Alu -7 136 7 238 214 19 68 chr12 101225755 101225858 -43056631 - L1ME LINE L1 -253 5917 5820 661 161 54 31 chr12 101226054 101226184 -43056305 - FLAM_A SINE Alu 0 133 1 607 242 175 23 chr12 101226273 101226339 -43056150 + L2 LINE L2 2709 2764 -549 2243 126 3 0 chr12 101226339 101226649 -43055840 - AluSp SINE Alu -2 311 1 607 242 175 23 chr12 101226649 101226900 -43055589 + L2 LINE L2 2764 3066 -247 324 0 0 0 chr12 101226913 101226949 -43055540 + (CA)n Simple_repeat Simple_repeat 2 37 0 275 279 15 0 chr12 101227291 101227359 -43055130 - L2 LINE L2 0 3272 3204 2262 71 10 19 chr12 101227493 101227804 -43054685 - AluY SINE Alu -3 308 1 228 287 64 43 chr12 101228229 101228323 -43054166 - L2 LINE L2 -499 2815 2720 687 264 119 31 chr12 101228422 101228782 -43053707 + L1MC4a LINE L1 5723 6114 -1694 1087 163 22 27 chr12 101228848 101229032 -43053457 - AluJo SINE Alu -23 289 107 378 0 0 0 chr12 101229203 101229245 -43053244 + (TG)n Simple_repeat Simple_repeat 2 43 0 608 235 176 23 chr12 101229254 101229510 -43052979 - L2 LINE L2 -243 3070 2764 2243 126 3 0 chr12 101229510 101229820 -43052669 + AluSp SINE Alu 1 311 -2 608 235 176 23 chr12 101229820 101229886 -43052603 - L2 LINE L2 -549 2764 2709 661 161 54 31 chr12 101229975 101230105 -43052384 + FLAM_A SINE Alu 1 133 0 238 214 19 68 chr12 101230301 101230404 -43052085 + L1ME4a LINE L1 5820 5917 -253 2192 111 3 13 chr12 101230413 101230711 -43051778 + AluSx SINE Alu 7 301 -11 2558 135 31 5 chr12 101231266 101231682 -43050807 + MSTA LTR MaLR 1 427 -1 2039 93 41 4 chr12 101232599 101232893 -43049596 + AluY SINE Alu 1 304 0 719 202 67 88 chr12 101233385 101233623 -43048866 - L1ME3A LINE L1 -1 6169 5937 298 380 8 0 chr12 101234411 101234540 -43047949 + MIR3 SINE MIR 34 163 -45 677 229 66 50 chr12 101234597 101234855 -43047634 + MIR SINE MIR 1 262 0 264 242 174 30 chr12 101234913 101235045 -43047444 + L1ME4a LINE L1 5969 6119 -2 1270 104 21 10 chr12 101235945 101236010 -43046479 - MER30 DNA MER1_type -35 195 132 2408 84 10 0 chr12 101236010 101236307 -43046182 - AluSx SINE Alu -12 300 1 1270 104 21 10 chr12 101236307 101236434 -43046055 - MER30 DNA MER1_type -98 132 1 288 276 26 13 chr12 101236621 101236697 -43045792 - MLT1I LTR MaLR -301 108 41 584 236 70 0 chr12 101236716 101236873 -43045616 - MIR SINE MIR -62 200 33 195 257 40 40 chr12 101236904 101236978 -43045511 - MIR SINE MIR -26 236 163 1396 121 40 48 chr12 101237287 101237535 -43044954 - AluSx SINE Alu -11 301 56 1619 131 40 50 chr12 101238660 101238957 -43043532 + AluJb SINE Alu 1 294 -18 2011 101 21 86 chr12 101239541 101239867 -43042622 + AluSq SINE Alu 1 305 -8 2253 115 0 0 chr12 101240098 101240402 -43042087 + AluSx SINE Alu 1 304 -8 1134 129 41 0 chr12 101240403 101240545 -43041944 + AluSq SINE Alu 136 400 0 599 86 9 35 chr12 101240545 101240661 -43041828 + (GAA)n Simple_repeat Simple_repeat 2 180 0 31 0 0 0 chr12 101241370 101241401 -43041088 + AT_rich Low_complexity Low_complexity 1 31 0 808 173 0 15 chr12 101241427 101241575 -43040914 - FRAM SINE Alu -39 137 1 1900 149 7 23 chr12 101244182 101244491 -43037998 + AluJo SINE Alu 2 305 -7 2218 122 0 6 chr12 101244676 101244987 -43037502 + AluSx SINE Alu 1 309 -3 271 203 27 40 chr12 101245331 101245405 -43037084 - MIR SINE MIR -157 105 33 712 241 156 13 chr12 101246193 101246417 -43036072 + MIR SINE MIR 3 258 -4 782 164 0 0 chr12 101247064 101247186 -43035303 + FLAM_A SINE Alu 2 123 -10 186 43 0 0 chr12 101247203 101247226 -43035263 + (GA)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr12 101247396 101247416 -43035073 + (T)n Simple_repeat Simple_repeat 1 20 0 268 296 0 0 chr12 101248193 101248264 -43034225 + MER112 DNA MER1_type 67 137 -123 2026 123 0 39 chr12 101248387 101248697 -43033792 + AluSx SINE Alu 1 298 -14 1877 146 58 3 chr12 101248697 101248992 -43033497 + AluSx SINE Alu 1 311 -1 644 202 31 16 chr12 101249767 101249896 -43032593 - FLAM_A SINE Alu -1 132 2 1494 124 0 0 chr12 101250234 101250436 -43032053 - AluSg/x SINE Alu -16 294 93 727 158 0 0 chr12 101250438 101250552 -43031937 - AluSq/x SINE Alu -189 124 11 436 235 131 78 chr12 101250614 101250932 -43031557 + L1ME3 LINE L1 5803 6160 -2 1738 172 23 23 chr12 101251670 101251978 -43030511 + AluJb SINE Alu 1 308 -4 201 39 0 0 chr12 101253161 101253187 -43029302 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2229 112 6 22 chr12 101253508 101253707 -43028782 - AluSx SINE Alu -3 309 115 4536 153 84 47 chr12 101253707 101254740 -43027749 - MER11C LTR ERVK 0 1071 1 2229 112 6 22 chr12 101254740 101254854 -43027635 - AluSx SINE Alu -197 115 1 1752 120 68 58 chr12 101256100 101256408 -43026081 + AluJo SINE Alu 1 311 -1 290 232 73 0 chr12 101256408 101256490 -43025999 - MIR SINE MIR -155 107 20 258 317 33 10 chr12 101256866 101256996 -43025493 - MLT1L LTR MaLR -114 492 268 256 222 95 19 chr12 101257019 101257142 -43025347 - MLT1J LTR MaLR -303 312 111 22 0 0 0 chr12 101257578 101257600 -43024889 + AT_rich Low_complexity Low_complexity 1 22 0 194 61 0 30 chr12 101257699 101257732 -43024757 + (CCA)n Simple_repeat Simple_repeat 2 33 0 253 297 84 13 chr12 101257748 101257903 -43024586 + L1MC/D LINE L1 5728 5893 -1915 2162 133 45 9 chr12 101258703 101259035 -43023454 + MER2 DNA MER2_type 1 344 0 2014 133 7 7 chr12 101259148 101259442 -43023047 - AluJb SINE Alu -14 298 5 2340 84 3 3 chr12 101259456 101259755 -43022734 - AluSc SINE Alu -10 299 1 225 0 0 0 chr12 101260248 101260273 -43022216 + (CA)n Simple_repeat Simple_repeat 2 26 0 2486 85 0 0 chr12 101260328 101260635 -43021854 + AluSq SINE Alu 1 307 -6 27 0 0 0 chr12 101260658 101260685 -43021804 + AT_rich Low_complexity Low_complexity 1 27 0 265 319 0 0 chr12 101261072 101261166 -43021323 + MIR SINE MIR 159 252 -10 879 151 70 22 chr12 101261195 101261325 -43021164 + MER46A DNA MER2_type 32 175 -2556 1743 158 16 10 chr12 101261325 101261629 -43020860 + AluSx SINE Alu 1 306 -6 879 151 70 22 chr12 101261629 101261683 -43020806 + MER46A DNA MER2_type 175 225 -11 394 296 10 0 chr12 101261880 101261978 -43020511 - L2 LINE L2 -1 3271 3173 541 289 102 38 chr12 101263010 101263245 -43019244 - MIR SINE MIR 0 262 13 2259 96 0 3 chr12 101263857 101264150 -43018339 - AluSc SINE Alu -17 292 1 316 265 41 10 chr12 101264214 101264312 -43018177 + MIR SINE MIR 152 252 -10 214 311 0 0 chr12 101264712 101264786 -43017703 - MIR3 SINE MIR -18 190 117 183 42 0 0 chr12 101265121 101265145 -43017344 + (TA)n Simple_repeat Simple_repeat 2 25 0 2218 113 0 0 chr12 101265836 101266143 -43016346 - AluSx SINE Alu 0 307 1 319 210 151 17 chr12 101266384 101266503 -43015986 + MER113 DNA MER1_type? 5 139 -382 1618 159 7 56 chr12 101266579 101266881 -43015608 + AluJb SINE Alu 3 289 -23 777 110 118 0 chr12 101267461 101267597 -43014892 - MER30 DNA MER1_type -78 152 1 * 989 158 258 0 chr12 101267597 101267834 -43014655 + MER44D DNA MER2_type 214 567 -38 2032 140 33 12 chr12 101268243 101268579 -43013910 + L1MC1 LINE L1 5991 6333 0 465 108 14 0 chr12 101271081 101271155 -43011334 + L1MB7 LINE L1 6056 6130 -54 669 212 0 15 chr12 101271980 101272112 -43010377 + FLAM_A SINE Alu 1 130 -3 2254 104 0 0 chr12 101273515 101273802 -43008687 - AluSc SINE Alu -22 287 1 2465 95 0 0 chr12 101273811 101274115 -43008374 - AluSx SINE Alu -8 304 1 377 308 99 50 chr12 101274418 101274961 -43007528 + L2 LINE L2 2174 2743 -571 710 195 78 26 chr12 101275081 101275235 -43007254 - FRAM SINE Alu -15 161 1 323 285 34 73 chr12 101275264 101275443 -43007046 + L2 LINE L2 2921 3092 -180 2144 113 7 17 chr12 101275607 101275907 -43006582 + AluSx SINE Alu 5 301 -11 733 233 42 10 chr12 101276816 101277009 -43005480 - MIR SINE MIR -13 249 51 1243 187 108 32 chr12 101277300 101277578 -43004911 - AluJo SINE Alu -13 299 1 1582 128 45 65 chr12 101277988 101278278 -43004211 - AluJo SINE Alu -24 288 5 470 258 20 33 chr12 101278483 101278634 -43003855 + MIR SINE MIR 87 235 -27 27 0 0 0 chr12 101278672 101278699 -43003790 + AT_rich Low_complexity Low_complexity 1 27 0 2067 94 44 0 chr12 101278701 101278976 -43003513 - AluY SINE Alu -24 287 1 223 224 211 0 chr12 101278988 101279064 -43003425 - MIR SINE MIR -64 144 53 2327 97 7 7 chr12 101279365 101279673 -43002816 + AluSx SINE Alu 1 308 -4 2254 103 0 0 chr12 101280724 101281043 -43001446 + AluSx SINE Alu 1 319 0 2061 120 0 3 chr12 101281952 101282265 -43000224 + AluSq SINE Alu 1 312 0 1569 179 93 3 chr12 101282540 101282864 -42999625 - MER46B DNA MER2_type -4 232 5 213 43 64 21 chr12 101283047 101283094 -42999395 + A-rich Low_complexity Low_complexity 2 50 0 261 0 0 0 chr12 101284466 101284495 -42997994 + (T)n Simple_repeat Simple_repeat 1 29 0 2147 103 35 0 chr12 101284724 101285006 -42997483 + AluSx SINE Alu 2 293 -19 3514 136 14 20 chr12 101285013 101285536 -42996953 - L1MD2 LINE L1 -524 5835 5315 2030 136 3 10 chr12 101285536 101285845 -42996644 - AluSx SINE Alu -5 307 1 3514 136 14 20 chr12 101285845 101286016 -42996473 - L1MD2 LINE L1 -1044 5315 5144 262 294 0 0 chr12 101286925 101286993 -42995496 + L2 LINE L2 3227 3294 -19 210 287 148 9 chr12 101287187 101287295 -42995194 - L2 LINE L2 -2 3311 3189 409 224 9 43 chr12 101287592 101287708 -42994781 - MLT1K LTR MaLR 0 588 477 785 264 100 11 chr12 101287708 101287977 -42994512 + MLT1H LTR MaLR 1 293 -256 1208 193 96 0 chr12 101288007 101288256 -42994233 + AluJo SINE Alu 1 273 -39 3992 153 64 100 chr12 101288358 101289322 -42993167 - MER21A LTR ERV1 0 931 2 447 183 64 130 chr12 101289323 101289471 -42993018 + MLT1G1 LTR MaLR 337 542 -53 2467 87 0 0 chr12 101289471 101289771 -42992718 - AluSx SINE Alu -12 300 1 447 183 64 130 chr12 101289771 101289811 -42992678 + MLT1G1 LTR MaLR 542 583 -12 1256 291 106 9 chr12 101289823 101290246 -42992243 - MLT1K LTR MaLR -123 465 2 26 30 0 0 chr12 101290726 101290759 -42991730 + AT_rich Low_complexity Low_complexity 1 33 0 1894 118 14 21 chr12 101291332 101291620 -42990869 + AluSx SINE Alu 1 286 -26 1744 143 14 7 chr12 101293037 101293343 -42989146 + AluSx SINE Alu 1 308 0 369 0 0 0 chr12 101293406 101293447 -42989042 + (CA)n Simple_repeat Simple_repeat 2 42 0 216 158 0 0 chr12 101293503 101293541 -42988948 + A-rich Low_complexity Low_complexity 1 38 0 565 194 58 19 chr12 101293762 101293917 -42988572 - MER113 DNA MER1_type? -46 475 315 1570 156 7 53 chr12 101293921 101294222 -42988267 - AluJb SINE Alu -23 289 3 316 210 151 17 chr12 101294298 101294417 -42988072 - MER113 DNA MER1_type? -382 139 5 182 278 167 0 chr12 101294495 101294549 -42987940 - MIR SINE MIR -174 88 26 2276 107 0 0 chr12 101294658 101294967 -42987522 + AluSx SINE Alu 1 309 -3 201 39 0 0 chr12 101295656 101295682 -42986807 + (TA)n Simple_repeat Simple_repeat 2 27 0 244 311 0 0 chr12 101296017 101296091 -42986398 + MIR3 SINE MIR 117 190 -18 362 265 41 10 chr12 101296491 101296589 -42985900 - MIR SINE MIR -10 252 152 2135 96 0 3 chr12 101296653 101296946 -42985543 + AluSc SINE Alu 1 292 -17 632 289 102 38 chr12 101297558 101297793 -42984696 + MIR SINE MIR 13 262 0 427 317 50 0 chr12 101298803 101298923 -42983566 + L2 LINE L2 3146 3271 -1 1099 154 32 0 chr12 101299120 101299174 -42983315 - MER46A DNA MER2_type -2506 225 174 1981 134 3 7 chr12 101299174 101299481 -42983008 - AluSx SINE Alu -6 306 1 1099 154 32 0 chr12 101299481 101299506 -42982983 - MER46A DNA MER2_type -2557 174 140 333 198 182 25 chr12 101299506 101299627 -42982862 + MER46A DNA MER2_type 3 142 -94 319 300 25 50 chr12 101299643 101299809 -42982680 - MIR SINE MIR -10 252 55 27 0 0 0 chr12 101300124 101300151 -42982338 + AT_rich Low_complexity Low_complexity 1 27 0 2331 88 0 0 chr12 101300174 101300481 -42982008 - AluSq SINE Alu -6 307 1 21 0 0 0 chr12 101300481 101300502 -42981987 + AT_rich Low_complexity Low_complexity 1 21 0 478 225 73 47 chr12 101300502 101300693 -42981796 - MIR SINE MIR -59 203 8 1930 79 41 0 chr12 101301965 101302269 -42980220 - AluSg1 SINE Alu 0 315 1 32 57 0 0 chr12 101304028 101304081 -42978408 + GC_rich Low_complexity Low_complexity 1 53 0 30 59 0 0 chr12 101304312 101304363 -42978126 + GC_rich Low_complexity Low_complexity 1 51 0 303 279 15 0 chr12 101304633 101304701 -42977788 - L2 LINE L2 0 3272 3204 2426 65 0 7 chr12 101304835 101305142 -42977347 - AluY SINE Alu -6 305 1 685 264 119 31 chr12 101305760 101306120 -42976369 + L1MC4a LINE L1 5723 6114 -1694 1465 133 90 54 chr12 101306186 101306465 -42976024 - AluJo SINE Alu -23 289 1 2094 102 7 23 chr12 101307711 101307825 -42974664 + AluSx SINE Alu 1 115 -197 4389 158 84 47 chr12 101307825 101308858 -42973631 + MER11C LTR ERVK 1 1071 0 2094 102 7 23 chr12 101308858 101309046 -42973443 + AluSx SINE Alu 115 298 -14 1015 217 82 16 chr12 101309116 101309360 -42973129 - MER58 DNA MER1_type -2160 260 1 1260 199 0 30 chr12 101309459 101309726 -42972763 - AluJo SINE Alu -53 259 1 26 0 0 0 chr12 101309734 101309760 -42972729 + AT_rich Low_complexity Low_complexity 1 26 0 488 252 52 0 chr12 101310277 101310392 -42972097 - L2 LINE L2 0 3313 3193 1485 214 92 22 chr12 101310504 101310874 -42971615 + MSTD LTR MaLR 1 396 0 221 254 95 0 chr12 101311120 101311183 -42971306 + MIR SINE MIR 117 185 -77 604 221 135 25 chr12 101311217 101311380 -42971109 - MIR SINE MIR -2 260 80 792 272 173 24 chr12 101311679 101312131 -42970358 - LTR33 LTR ERVL -1 520 2 3455 119 2 50 chr12 101312745 101313299 -42969190 - MER1A DNA MER1_type 0 527 1 1986 226 41 71 chr12 101313507 101314165 -42968324 + L1ME3 LINE L1 5496 6133 -29 359 284 144 0 chr12 101314299 101314493 -42967996 + L1ME LINE L1 5559 5780 -341 2167 155 30 25 chr12 101314884 101315246 -42967243 - THE1B LTR MaLR 0 364 1 1915 118 0 4 chr12 101315297 101315576 -42966913 + AluJb SINE Alu 9 286 -26 333 19 56 0 chr12 101315576 101315630 -42966859 + (TA)n Simple_repeat Simple_repeat 1 57 0 298 276 236 0 chr12 101316201 101316324 -42966165 + MIR SINE MIR 100 251 -11 2454 96 16 3 chr12 101316459 101316825 -42965664 + L1MA1 LINE L1 5926 6296 -6 22 0 0 0 chr12 101316829 101316851 -42965638 + AT_rich Low_complexity Low_complexity 1 22 0 404 257 29 9 chr12 101317074 101317179 -42965310 - L2 LINE L2 0 3272 3166 273 303 0 0 chr12 101318112 101318188 -42964301 - L2 LINE L2 0 3272 3197 1311 229 162 32 chr12 101318956 101319490 -42962999 - L2 LINE L2 -20 3293 2700 1757 222 73 22 chr12 101319491 101319986 -42962503 - L2 LINE L2 -1580 1734 1215 629 126 19 10 chr12 101319988 101320091 -42962398 + FLAM_A SINE Alu 20 123 -19 241 176 0 20 chr12 101320456 101320507 -42961982 - Alu SINE Alu -2 131 82 2256 89 3 3 chr12 101320940 101321243 -42961246 + AluY SINE Alu 1 303 -8 1136 124 0 16 chr12 101321888 101322074 -42960415 - AluSg/x SINE Alu -8 304 122 243 242 209 20 chr12 101323623 101323776 -42958713 - L2 LINE L2 0 3272 3091 191 328 0 31 chr12 101324299 101324363 -42958126 - L2 LINE L2 -952 2362 2301 565 95 9 35 chr12 101325086 101325202 -42957287 + (GAA)n Simple_repeat Simple_repeat 2 114 0 31 0 0 0 chr12 101325910 101325941 -42956548 + AT_rich Low_complexity Low_complexity 1 31 0 808 196 0 7 chr12 101325977 101326115 -42956374 - FRAM SINE Alu -39 137 1 228 302 238 0 chr12 101327928 101328054 -42954435 - MIR SINE MIR -55 207 52 1750 155 0 23 chr12 101328722 101329025 -42953464 + AluJb SINE Alu 2 297 -15 1769 133 0 10 chr12 101329284 101329577 -42952912 - AluY SINE Alu -21 290 1 24 0 0 70 chr12 101329624 101329648 -42952841 + AT_rich Low_complexity Low_complexity 1 22 -18 850 142 26 0 chr12 101329648 101329803 -42952686 - L1MA7 LINE L1 -5 6286 6128 24 0 0 70 chr12 101329803 101329821 -42952668 + AT_rich Low_complexity Low_complexity 22 40 0 1420 176 36 25 chr12 101329823 101330102 -42952387 - AluJo SINE Alu -30 282 1 385 224 155 0 chr12 101330567 101330683 -42951806 - L2 LINE L2 -38 3234 3101 1347 251 230 26 chr12 101332117 101332840 -42949649 - L2 LINE L2 -3 3310 2430 301 248 59 59 chr12 101332821 101332922 -42949567 + MIR SINE MIR 28 128 -134 * 1833 123 22 4 chr12 101332930 101333198 -42949291 + AluSx SINE Alu 1 273 -39 198 0 0 0 chr12 101333209 101333231 -42949258 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2171 106 73 22 chr12 101333792 101334149 -42948340 + THE1C LTR MaLR 1 375 0 2096 118 0 20 chr12 101334472 101334778 -42947711 - AluSx SINE Alu -12 300 1 519 167 19 19 chr12 101334797 101334905 -42947584 + MLT1C LTR MaLR 1 108 -359 2025 113 3 7 chr12 101334924 101335225 -42947264 - AluSq SINE Alu -13 300 1 309 169 123 0 chr12 101335226 101335291 -42947198 - L1MB7 LINE L1 -121 6063 5991 2382 146 55 40 chr12 101335296 101335357 -42947132 - L1MB7 LINE L1 -326 5858 5799 1940 122 10 7 chr12 101335357 101335653 -42946836 - AluSx SINE Alu -15 297 1 2382 146 55 40 chr12 101335653 101336064 -42946425 - L1MB7 LINE L1 -385 5799 5390 24 0 0 0 chr12 101336104 101336128 -42946361 + AT_rich Low_complexity Low_complexity 1 24 0 278 251 212 41 chr12 101336594 101336797 -42945692 + MIR SINE MIR 10 256 -6 21 0 0 0 chr12 101337244 101337265 -42945224 + AT_rich Low_complexity Low_complexity 1 21 0 751 276 33 82 chr12 101338133 101338519 -42943970 - L2 LINE L2 -157 3156 2778 218 218 0 18 chr12 101338524 101338579 -42943910 - L2 LINE L2 -653 2661 2608 2101 114 3 13 chr12 101338647 101338819 -42943670 - AluSx SINE Alu -7 305 136 2159 72 0 0 chr12 101338819 101339097 -42943392 - AluSq SINE Alu -1 312 35 2101 114 3 13 chr12 101339097 101339232 -42943257 - AluSx SINE Alu -176 136 1 190 275 88 11 chr12 101339513 101339604 -42942885 - L2 LINE L2 -1240 2074 1977 330 272 176 0 chr12 101339617 101339742 -42942747 - MIR SINE MIR -32 230 84 322 303 113 39 chr12 101339745 101339976 -42942513 - L2 LINE L2 -1338 1976 1729 814 126 31 0 chr12 101339984 101340111 -42942378 + AluSq/x SINE Alu 1 131 -181 209 303 61 32 chr12 101340511 101340682 -42941807 + MIR SINE MIR 25 197 -65 1876 131 21 0 chr12 101340811 101341101 -42941388 + AluJb SINE Alu 1 296 -16 219 257 134 40 chr12 101342414 101342616 -42939873 + L2 LINE L2 2842 3062 -210 356 314 186 26 chr12 101342662 101342888 -42939601 - MIR SINE MIR 0 262 1 483 296 42 42 chr12 101343419 101343632 -42938857 + MIR SINE MIR 1 213 -49 2211 92 0 84 chr12 101343857 101344192 -42938297 + AluSq SINE Alu 2 308 -5 2200 112 63 20 chr12 101344207 101344556 -42937933 + THE1B LTR MaLR 1 364 0 1411 144 24 0 chr12 101344559 101344767 -42937722 + AluJb SINE Alu 87 299 -13 2317 153 62 2 chr12 101344906 101345310 -42937179 + MSTA LTR MaLR 1 428 0 199 279 58 0 chr12 101345367 101345453 -42937036 - MER5B DNA MER1_type -3 175 85 698 223 14 0 chr12 101345453 101345601 -42936888 - FRAM SINE Alu -14 162 13 1735 157 0 4 chr12 101345720 101345981 -42936508 + AluSx SINE Alu 1 260 -52 27 0 0 0 chr12 101346176 101346203 -42936286 + AT_rich Low_complexity Low_complexity 1 27 0 310 200 13 160 chr12 101346394 101346544 -42935945 - MLT1K LTR MaLR -7 581 454 494 327 100 18 chr12 101346660 101346880 -42935609 - MLT1K LTR MaLR -152 436 199 386 257 170 23 chr12 101346891 101347062 -42935427 + MLT1K LTR MaLR 10 205 -383 468 211 53 0 chr12 101347200 101347295 -42935194 - MER5A DNA MER1_type -80 109 10 200 137 20 0 chr12 101347659 101347710 -42934779 + A-rich Low_complexity Low_complexity 2 53 0 290 272 58 10 chr12 101348937 101349040 -42933449 - L2 LINE L2 -3 3269 3162 207 274 0 55 chr12 101351581 101351654 -42930835 + L2 LINE L2 3244 3312 -1 2328 110 3 0 chr12 101352301 101352610 -42929879 + AluSx SINE Alu 1 310 -2 557 274 43 11 chr12 101352743 101352929 -42929560 + MIR SINE MIR 71 262 0 182 227 40 67 chr12 101353050 101353104 -42929385 + L2 LINE L2 3225 3278 -35 3518 125 49 32 chr12 101353104 101353697 -42928792 - MER6A DNA MER2_type -1 604 2 182 227 40 67 chr12 101353697 101353717 -42928772 + L2 LINE L2 3278 3297 -16 540 206 17 70 chr12 101354144 101354338 -42928151 - MER3 DNA MER1_type -41 168 41 1872 124 0 75 chr12 101354845 101355176 -42927313 - AluJb SINE Alu -6 306 1 329 274 0 32 chr12 101355998 101356093 -42926396 - MIR SINE MIR -119 143 52 264 282 18 27 chr12 101356099 101356209 -42926280 + MIR SINE MIR 66 174 -88 454 259 86 40 chr12 101356627 101356893 -42925596 - L1ME LINE L1 -367 5795 5421 2415 84 0 3 chr12 101356893 101357192 -42925297 - AluY SINE Alu -13 298 1 454 259 86 40 chr12 101357192 101357244 -42925245 - L1ME LINE L1 -741 5421 5373 284 273 106 6 chr12 101357422 101357583 -42924906 - AluSg/x SINE Alu -3 299 123 1274 216 52 19 chr12 101358469 101358641 -42923848 + MLT1B LTR MaLR 1 166 -224 1900 90 68 8 chr12 101358641 101358907 -42923582 + AluSx SINE Alu 1 282 -30 1274 216 52 19 chr12 101358907 101359167 -42923322 + MLT1B LTR MaLR 166 385 -5 1860 101 0 116 chr12 101359997 101360334 -42922155 + AluSx SINE Alu 1 298 -4 1679 162 3 37 chr12 101360690 101361011 -42921478 - AluJb SINE Alu -2 310 1 441 180 0 22 chr12 101361023 101361112 -42921377 - AluSc SINE Alu -5 304 218 482 206 42 24 chr12 101361112 101361277 -42921212 - AluJb SINE Alu -138 174 7 436 325 38 12 chr12 101361608 101361633 -42920856 + MIR SINE MIR 10 33 -229 2037 118 3 33 chr12 101361633 101361937 -42920552 + AluSx SINE Alu 1 295 -17 436 325 38 12 chr12 101361937 101362071 -42920418 + MIR SINE MIR 33 173 -89 271 248 88 26 chr12 101362115 101362228 -42920261 - L1ME3 LINE L1 0 6162 6043 398 0 65 0 chr12 101363112 101363174 -42919315 + L1HS LINE L1 6090 6155 0 227 258 15 0 chr12 101364715 101364781 -42917708 - L1P LINE L1 -776 5392 5326 1976 226 51 10 chr12 101365584 101366071 -42916418 - L1MD3 LINE L1 0 7995 7489 1605 214 157 57 chr12 101366089 101366637 -42915852 - MER21B LTR ERV1 -57 806 204 1141 137 58 16 chr12 101366639 101366829 -42915660 - THE1B LTR MaLR 0 364 167 23 33 0 0 chr12 101367804 101367834 -42914655 + AT_rich Low_complexity Low_complexity 1 30 0 1867 115 0 8 chr12 101367841 101368093 -42914396 - AluSx SINE Alu -62 250 1 1607 167 105 19 chr12 101368213 101368537 -42913952 - MLT1A1 LTR MaLR -13 352 1 217 128 26 0 chr12 101368927 101368966 -42913523 - MIR SINE MIR -109 153 114 312 300 116 48 chr12 101369008 101369301 -42913188 - L2 LINE L2 -110 3162 2850 2307 94 0 0 chr12 101369355 101369641 -42912848 + AluSx SINE Alu 1 286 -26 479 289 147 27 chr12 101369733 101370107 -42912382 - L3 LINE CR1 -56 1521 1103 490 261 45 40 chr12 101370739 101370915 -42911574 - MER5B DNA MER1_type 0 178 2 249 178 181 37 chr12 101371413 101371496 -42910993 - MIR SINE MIR -62 146 56 2159 111 13 0 chr12 101373674 101373981 -42908508 + AluSp SINE Alu 1 311 -2 196 204 0 0 chr12 101374060 101374109 -42908380 - MIR SINE MIR -136 126 78 1361 165 18 0 chr12 101376771 101376995 -42905494 + AluSg/x SINE Alu 66 293 -19 684 103 21 0 chr12 101377496 101377593 -42904896 + AluSq/x SINE Alu 37 135 -178 1784 183 0 3 chr12 101377593 101377894 -42904595 + AluSx SINE Alu 1 300 -12 256 279 157 7 chr12 101378255 101378402 -42904087 + MIR SINE MIR 28 196 -66 1181 265 25 81 chr12 101378640 101379082 -42903407 - MLT1J LTR MaLR 0 511 95 289 179 18 0 chr12 101379103 101379159 -42903330 - L1MA10 LINE L1 -92 6242 6186 419 200 125 0 chr12 101379160 101379240 -42903249 - MLT1J LTR MaLR -397 114 25 2017 61 19 4 chr12 101379300 101379583 -42902906 - AluY SINE Alu 0 300 14 418 158 0 24 chr12 101379683 101379765 -42902724 + AluJ/FRAM SINE Alu 226 305 -7 2218 122 0 6 chr12 101379950 101380261 -42902228 + AluSx SINE Alu 1 309 -3 285 189 27 40 chr12 101380605 101380679 -42901810 - MIR SINE MIR -157 105 33 225 154 0 0 chr12 101381360 101381399 -42901090 + T-rich Low_complexity Low_complexity 1 39 0 333 0 0 0 chr12 101381455 101381492 -42900997 + (TG)n Simple_repeat Simple_repeat 2 38 0 1812 146 14 7 chr12 101381555 101381861 -42900628 - AluSx SINE Alu 0 308 1 225 176 0 0 chr12 101382392 101382426 -42900063 - MER21B LTR ERV1 -811 52 19 590 180 9 9 chr12 101382438 101382549 -42899940 - L1MD3 LINE L1 -500 7495 7385 1302 184 89 61 chr12 101382660 101382987 -42899502 + MER58B DNA MER1_type 1 336 -5 2264 163 35 5 chr12 101384061 101384466 -42898023 + MSTA LTR MaLR 1 417 -11 749 218 27 7 chr12 101385317 101385464 -42897025 + MLT1G1 LTR MaLR 446 595 0 1880 142 0 34 chr12 101387422 101387717 -42894772 - AluSx SINE Alu -25 287 3 2308 111 0 0 chr12 101387963 101388261 -42894228 - AluSg SINE Alu -12 298 1 240 175 18 18 chr12 101389052 101389109 -42893380 + MER20B DNA MER1_type 26 82 -701 226 172 9 147 chr12 101389114 101389197 -42893292 + MER20B DNA MER1_type 684 748 -35 1879 129 79 0 chr12 101389197 101389475 -42893014 + AluSx SINE Alu 5 304 -8 226 172 9 147 chr12 101389475 101389507 -42892982 + MER20B DNA MER1_type 748 783 0 278 265 98 0 chr12 101389619 101389721 -42892768 + MIR SINE MIR 103 214 -48 212 149 21 0 chr12 101389870 101389917 -42892572 + CT-rich Low_complexity Low_complexity 2 49 0 307 331 114 0 chr12 101390374 101390558 -42891931 - MIR SINE MIR -56 206 2 863 227 23 46 chr12 101390828 101391088 -42891401 + MIR SINE MIR 6 259 -3 279 0 0 0 chr12 101392172 101392203 -42890286 + (CA)n Simple_repeat Simple_repeat 1 31 0 272 309 88 7 chr12 101392577 101392713 -42889776 - MIR SINE MIR -70 192 46 1670 176 10 20 chr12 101393329 101393630 -42888859 + AluJo SINE Alu 1 298 -14 2426 197 101 10 chr12 101393804 101394321 -42888168 + MLT1F1 LTR MaLR 2 565 -2 271 159 79 0 chr12 101394420 101394483 -42888006 + MIR SINE MIR 84 151 -111 1872 122 0 44 chr12 101394501 101394795 -42887694 - AluSx SINE Alu 0 312 32 22 0 0 0 chr12 101395322 101395344 -42887145 + AT_rich Low_complexity Low_complexity 1 22 0 207 360 40 0 chr12 101395775 101395850 -42886639 - L2 LINE L2 -8 3305 3228 798 289 62 38 chr12 101396519 101396972 -42885517 + L1ME4a LINE L1 5477 5940 -181 261 242 0 15 chr12 101397019 101397085 -42885404 + L1ME4a LINE L1 6054 6118 -3 290 331 48 18 chr12 101397274 101397440 -42885049 - L2 LINE L2 -23 3290 3120 195 267 78 35 chr12 101397505 101397621 -42884868 - L2 LINE L2 -335 2978 2858 183 179 0 0 chr12 101397680 101397719 -42884770 + MIR SINE MIR 162 200 -62 772 258 75 27 chr12 101397769 101398064 -42884425 + L1MC5 LINE L1 7609 7917 -44 468 285 47 29 chr12 101398494 101398666 -42883823 + MIR3 SINE MIR 19 193 -15 320 222 50 20 chr12 101398691 101398790 -42883699 - L1ME4a LINE L1 -18 6103 6002 2212 112 13 0 chr12 101400160 101400465 -42882024 - AluSq SINE Alu -4 309 1 323 305 49 37 chr12 101400505 101400669 -42881820 + L3 LINE CR1 1193 1358 -219 1881 163 7 3 chr12 101401072 101401366 -42881123 + AluSx SINE Alu 1 295 -17 253 356 81 0 chr12 101401474 101401623 -42880866 + L2 LINE L2 3153 3313 0 1483 235 77 7 chr12 101401661 101402090 -42880399 - MER113 DNA MER1_type? -3 518 60 2238 117 3 0 chr12 101402351 101402649 -42879840 + AluSx SINE Alu 1 299 -13 402 21 0 0 chr12 101402711 101402758 -42879731 + (TG)n Simple_repeat Simple_repeat 2 48 0 229 246 0 0 chr12 101402921 101402982 -42879507 - L1ME4a LINE L1 -418 5756 5696 974 205 0 0 chr12 101402995 101403161 -42879328 - FRAM SINE Alu 0 166 1 1319 104 0 6 chr12 101403163 101403346 -42879143 - THE1B LTR MaLR -182 182 1 * 2521 177 14 2 chr12 101403346 101403756 -42878733 - MSTB1 LTR MaLR -17 415 1 1986 149 3 3 chr12 101403973 101404275 -42878214 - AluJb SINE Alu -2 310 9 215 286 13 13 chr12 101404375 101404452 -42878037 + (TG)n Simple_repeat Simple_repeat 2 78 0 183 156 0 0 chr12 101405084 101405116 -42877373 + (CA)n Simple_repeat Simple_repeat 1 32 0 423 127 0 28 chr12 101405573 101405644 -42876845 + MER94 DNA DNA 2 70 -64 1721 165 4 0 chr12 101405652 101405919 -42876570 + AluJb SINE Alu 1 268 -44 424 262 55 43 chr12 101406036 101406292 -42876197 + L2 LINE L2 2837 3095 -177 955 188 92 66 chr12 101406688 101406992 -42875497 - MER46C DNA MER2_type -6 332 21 1826 147 32 3 chr12 101406992 101407277 -42875212 + AluJb SINE Alu 1 293 -19 468 257 104 27 chr12 101407319 101407502 -42874987 - MIR SINE MIR -2 260 64 350 282 86 8 chr12 101408099 101408216 -42874273 - L2 LINE L2 0 3272 3147 2297 103 0 0 chr12 101409004 101409304 -42873185 - AluSc SINE Alu -9 300 1 360 230 53 53 chr12 101409442 101409555 -42872934 + MLT1J LTR MaLR 391 503 -8 30 0 0 0 chr12 101410448 101410478 -42872011 + AT_rich Low_complexity Low_complexity 1 30 0 1500 173 12 4 chr12 101410485 101410733 -42871756 - AluJo SINE Alu -62 250 1 1409 198 137 20 chr12 101411074 101411519 -42870970 - Charlie5 DNA MER1_type -107 2505 2009 2238 104 3 0 chr12 101411522 101411821 -42870668 - AluY SINE Alu -11 300 1 3213 94 9 0 chr12 101411822 101412258 -42870231 - L1PA15 LINE L1 -6 6159 5720 880 214 42 0 chr12 101413169 101413337 -42869152 + FAM SINE Alu 1 175 0 769 156 17 17 chr12 101413359 101413538 -42868951 + GA-rich Low_complexity Low_complexity 2 180 0 216 307 45 28 chr12 101414138 101414314 -42868175 - L2 LINE L2 -174 3098 2920 2548 53 0 0 chr12 101414739 101415041 -42867448 - AluY SINE Alu -9 302 1 847 137 148 108 chr12 101415052 101415095 -42867394 - L1MB3 LINE L1 -1 6182 6142 552 202 88 18 chr12 101415095 101415209 -42867280 - FLAM_A SINE Alu -11 122 1 847 137 148 108 chr12 101415209 101415223 -42867266 - L1MB3 LINE L1 -41 6142 6130 2173 106 30 0 chr12 101415223 101415524 -42866965 - AluSg SINE Alu 0 310 1 847 137 148 108 chr12 101415524 101415742 -42866747 - L1MB3 LINE L1 -53 6130 5895 522 261 82 33 chr12 101416689 101416873 -42865616 - MIR SINE MIR -7 255 63 1076 228 53 11 chr12 101417041 101417322 -42865167 - L1ME2 LINE L1 0 6164 5872 23 0 0 0 chr12 101417626 101417649 -42864840 + AT_rich Low_complexity Low_complexity 1 23 0 180 188 125 21 chr12 101417969 101418017 -42864472 - MIR SINE MIR -190 72 20 309 361 84 19 chr12 101419156 101419311 -42863178 + L2 LINE L2 3106 3270 -2 2362 130 78 24 chr12 101419332 101419754 -42862735 - MER65A LTR ERV1 0 445 1 271 288 90 18 chr12 101419960 101420071 -42862418 + MIR SINE MIR 32 150 -58 1325 178 155 37 chr12 101420171 101420525 -42861964 + MSTD LTR MaLR 1 396 0 2476 74 0 6 chr12 101420734 101421046 -42861443 - AluY SINE Alu -1 310 1 267 252 112 42 chr12 101421487 101421630 -42860859 + MLT1L LTR MaLR 463 615 0 776 257 61 15 chr12 101421633 101421894 -42860595 - L1ME2 LINE L1 -253 5868 5596 351 352 111 19 chr12 101422447 101422754 -42859735 + L2 LINE L2 2954 3288 -25 243 214 83 12 chr12 101423074 101423158 -42859331 - L1MC5 LINE L1 -22 7939 7850 2405 97 7 0 chr12 101424244 101424552 -42857937 - AluSx SINE Alu -2 310 1 312 300 116 48 chr12 101424606 101424899 -42857590 + L2 LINE L2 2850 3162 -110 217 128 26 0 chr12 101424941 101424980 -42857509 + MIR SINE MIR 114 153 -109 344 280 147 0 chr12 101425148 101425305 -42857184 - MIR SINE MIR 0 262 83 1053 206 44 13 chr12 101426616 101426844 -42855645 + MER46C DNA MER2_type 3 237 -101 2244 111 58 3 chr12 101427506 101427850 -42854639 + L1PB1 LINE L1 5788 6150 -1 611 239 123 10 chr12 101427866 101428088 -42854401 + MIR SINE MIR 19 262 0 298 315 31 24 chr12 101428509 101428593 -42853896 - L2 LINE L2 -3 3269 3182 1549 167 19 59 chr12 101428593 101428917 -42853572 + AluJo SINE Alu 1 311 -1 298 315 31 24 chr12 101428917 101428959 -42853530 - L2 LINE L2 -90 3182 3142 233 270 0 79 chr12 101429266 101429355 -42853134 - L2 LINE L2 -192 3080 2999 703 307 43 7 chr12 101429359 101429636 -42852853 + L1ME4a LINE L1 5533 5819 -302 312 239 87 71 chr12 101429726 101429910 -42852579 + L1ME4a LINE L1 5934 6120 -1 2362 67 0 7 chr12 101429918 101430203 -42852286 + AluSg SINE Alu 1 283 -27 2729 87 5 0 chr12 101430852 101431220 -42851269 - L1PB1 LINE L1 0 6151 5782 753 108 35 0 chr12 101431225 101431460 -42851029 + (TA)n Simple_repeat Simple_repeat 1 243 0 419 98 33 0 chr12 101431473 101431534 -42850955 - L1PB1 LINE L1 -427 5724 5662 2504 84 0 3 chr12 101431745 101432055 -42850434 - AluSc SINE Alu 0 309 1 1576 203 29 38 chr12 101432253 101432593 -42849896 - MER1B DNA MER1_type 0 337 1 731 271 126 29 chr12 101433254 101433705 -42848784 + L1ME4a LINE L1 5434 5928 -193 6668 131 70 9 chr12 101434027 101435186 -42847303 + Tigger3b DNA MER2_type 1 1229 -2 3076 167 31 49 chr12 101435190 101435585 -42846904 - MER6A DNA MER2_type -260 605 223 189 0 0 0 chr12 101435585 101435606 -42846883 + (CA)n Simple_repeat Simple_repeat 1 21 0 3076 167 31 49 chr12 101435606 101435826 -42846663 - MER6A DNA MER2_type -642 223 1 1611 132 0 13 chr12 101436417 101436652 -42845837 + AluSx SINE Alu 48 279 -33 696 35 0 0 chr12 101436653 101436740 -42845749 + (GA)n Simple_repeat Simple_repeat 1 87 0 25 0 0 0 chr12 101436741 101436766 -42845723 + AT_rich Low_complexity Low_complexity 1 25 0 402 21 0 0 chr12 101437854 101437901 -42844588 + (CA)n Simple_repeat Simple_repeat 2 48 0 798 164 77 0 chr12 101437963 101438158 -42844331 - AluSc SINE Alu -13 296 87 1281 186 20 7 chr12 101438357 101438663 -42843826 + AluSg SINE Alu 1 310 0 1257 140 21 5 chr12 101438670 101438863 -42843626 + THE1B LTR MaLR 169 364 0 342 0 0 0 chr12 101439003 101439041 -42843448 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 319 0 85 chr12 101440008 101440102 -42842387 - L3 LINE CR1 -607 970 885 1448 165 16 21 chr12 101440170 101440413 -42842076 - AluJo SINE Alu -16 296 55 2235 98 0 0 chr12 101440541 101440849 -42841640 - AluSx SINE Alu 0 308 1 421 278 144 24 chr12 101440879 101441264 -42841225 - L2 LINE L2 -1 3271 2771 928 195 110 16 chr12 101441285 101441693 -42840796 + MLT1D LTR MaLR 1 501 -4 789 273 101 21 chr12 101441766 101442154 -42840335 - L2 LINE L2 -640 2674 2256 503 264 107 19 chr12 101443097 101443311 -42839178 - MLT1L LTR MaLR -235 380 148 864 207 161 0 chr12 101443311 101443504 -42838985 + MER58A DNA MER1_type 1 224 0 808 191 0 7 chr12 101443633 101443780 -42838709 - AluJo SINE Alu -30 282 137 965 234 106 13 chr12 101444262 101444565 -42837924 + L1MD2 LINE L1 6028 6358 -1 789 183 0 0 chr12 101444697 101444828 -42837661 - AluJo SINE Alu -171 131 1 190 330 117 11 chr12 101444938 101445032 -42837457 + L3 LINE CR1 245 348 -1229 420 299 46 74 chr12 101445237 101445291 -42837198 + L3 LINE CR1 649 703 -874 2038 133 0 26 chr12 101445291 101445599 -42836890 + AluJb SINE Alu 1 300 -12 420 299 46 74 chr12 101445599 101445828 -42836661 + L3 LINE CR1 703 924 -653 213 344 74 0 chr12 101446265 101446387 -42836102 + MIR SINE MIR 16 146 -116 553 261 45 40 chr12 101446541 101446717 -42835772 + MER5B DNA MER1_type 2 178 0 253 308 30 89 chr12 101446839 101447008 -42835481 + L3 LINE CR1 931 1089 -488 645 263 158 38 chr12 101447349 101447722 -42834767 + L3 LINE CR1 1104 1521 -56 2353 80 0 0 chr12 101447800 101448099 -42834390 - AluY SINE Alu -12 299 1 22 0 0 0 chr12 101448146 101448168 -42834321 + AT_rich Low_complexity Low_complexity 1 22 0 1141 144 14 116 chr12 101448170 101448345 -42834144 - L1MA7 LINE L1 -5 6286 6149 1735 159 3 7 chr12 101448345 101448628 -42833861 - AluJo SINE Alu -30 282 1 1141 144 14 116 chr12 101448628 101448736 -42833753 - L1MA7 LINE L1 -142 6149 6032 906 491 21 4 chr12 101448750 101449029 -42833460 - AluJo SINE Alu -18 284 1 838 132 17 157 chr12 101449033 101449150 -42833339 - L1MA7 LINE L1 -155 6136 6067 1650 190 0 21 chr12 101449150 101449440 -42833049 - AluJo SINE Alu -28 284 1 838 132 17 157 chr12 101449440 101449557 -42832932 - L1MA7 LINE L1 -224 6067 5935 2059 103 67 0 chr12 101450382 101450664 -42831825 + AluSc SINE Alu 1 301 -8 1363 195 43 57 chr12 101450736 101450846 -42831643 + L1MC5 LINE L1 7482 7592 -369 1170 197 136 67 chr12 101450846 101451222 -42831267 + MER57A LTR ERV1 1 402 -1 1363 195 43 57 chr12 101451222 101451531 -42830958 + L1MC5 LINE L1 7592 7895 -66 21 0 0 0 chr12 101452251 101452272 -42830217 + AT_rich Low_complexity Low_complexity 1 21 0 4825 154 27 28 chr12 101453173 101453759 -42828730 - L1MB8 LINE L1 0 6178 5601 832 163 8 0 chr12 101453759 101453882 -42828607 - FLAM_A SINE Alu -9 124 1 4825 154 27 28 chr12 101453882 101454334 -42828155 - L1MB8 LINE L1 -577 5601 5150 2699 150 28 22 chr12 101454355 101454866 -42827623 + L1MB3 LINE L1 5636 6148 -35 2261 119 0 3 chr12 101454881 101455192 -42827297 + AluSx SINE Alu 1 310 -2 330 265 25 88 chr12 101456079 101456283 -42826206 - L2 LINE L2 0 3313 3123 1731 196 0 3 chr12 101456370 101456682 -42825807 + AluJo SINE Alu 1 311 -1 391 279 122 23 chr12 101456765 101456937 -42825552 + MIR SINE MIR 19 207 -55 1217 260 25 81 chr12 101457161 101457603 -42824886 - MLT1J LTR MaLR 0 511 95 291 179 18 0 chr12 101457624 101457680 -42824809 - L1MA10 LINE L1 -92 6242 6186 422 200 125 0 chr12 101457681 101457761 -42824728 - MLT1J LTR MaLR -397 114 25 2376 57 0 0 chr12 101457821 101458121 -42824368 - AluY SINE Alu 0 300 1 202 189 0 0 chr12 101458800 101458837 -42823652 + L2 LINE L2 3143 3179 -93 185 200 0 0 chr12 101459000 101459035 -42823454 + L2 LINE L2 3189 3223 -49 329 297 39 108 chr12 101459223 101459455 -42823034 + MIR SINE MIR 47 262 0 424 291 16 8 chr12 101459902 101460029 -42822460 - MER5B DNA MER1_type -47 131 4 23 0 0 0 chr12 101460186 101460209 -42822280 + AT_rich Low_complexity Low_complexity 1 23 0 2239 118 13 0 chr12 101460702 101461008 -42821481 - AluSx SINE Alu -2 310 1 330 182 0 0 chr12 101461826 101461881 -42820608 - L2 LINE L2 -5 3308 3254 1900 79 0 8 chr12 101463367 101463607 -42818882 + L1PA8 LINE L1 5933 6170 -2 213 121 0 0 chr12 101463610 101463643 -42818846 + (TA)n Simple_repeat Simple_repeat 1 33 0 270 260 0 62 chr12 101463651 101463747 -42818742 - L1MC4 LINE L1 -1339 6703 6614 257 318 0 0 chr12 101463750 101463813 -42818676 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 256 150 50 33 chr12 101463821 101463881 -42818608 - LTR57-int LTR ERVL -4401 942 882 214 416 0 0 chr12 101463882 101463971 -42818518 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 494 305 110 41 chr12 101464033 101464423 -42818066 - MLT1L LTR MaLR -22 593 177 406 299 85 6 chr12 101465109 101465286 -42817203 + MIR SINE MIR 35 225 -37 2059 135 26 0 chr12 101465768 101466071 -42816418 - AluSx SINE Alu -1 311 1 649 267 36 13 chr12 101466134 101466359 -42816130 - L1ME3A LINE L1 -220 5950 5721 510 213 0 0 chr12 101466393 101466487 -42816002 + MER94 DNA DNA 1 94 -40 215 314 226 0 chr12 101466874 101466998 -42815491 - MIR SINE MIR -48 214 63 1110 159 14 77 chr12 101467642 101467850 -42814639 + AluJo SINE Alu 1 195 -117 1034 205 0 0 chr12 101467946 101468112 -42814377 + FRAM SINE Alu 1 166 0 394 247 117 12 chr12 101468317 101468357 -42814132 + MIR SINE MIR 81 115 -147 2118 110 0 23 chr12 101468357 101468656 -42813833 - AluSx SINE Alu -20 292 1 394 247 117 12 chr12 101468656 101468777 -42813712 + MIR SINE MIR 115 259 -3 570 181 77 107 chr12 101468898 101469107 -42813382 + L1ME4a LINE L1 5540 5738 -383 493 215 51 25 chr12 101469216 101469374 -42813115 + L1ME4a LINE L1 5959 6120 -1 687 279 86 16 chr12 101469445 101469689 -42812800 + L3 LINE CR1 1090 1350 -227 432 279 16 55 chr12 101469986 101470169 -42812320 + L2 LINE L2 2526 2701 -613 4062 100 57 51 chr12 101470651 101471134 -42811355 + L1MA4A LINE L1 5602 6092 -211 2224 120 0 0 chr12 101471134 101471433 -42811056 + AluSc SINE Alu 1 299 -10 4062 100 57 51 chr12 101471433 101471636 -42810853 + L1MA4A LINE L1 6092 6292 -11 364 244 0 56 chr12 101473077 101473167 -42809322 - L2 LINE L2 -1 3271 3187 2014 145 0 7 chr12 101473169 101473466 -42809023 - AluJo SINE Alu -10 302 8 2011 141 0 20 chr12 101473477 101473782 -42808707 - AluJb SINE Alu -13 299 1 380 288 114 105 chr12 101474045 101474123 -42808366 - L2 LINE L2 0 3272 3196 2301 116 0 0 chr12 101474123 101474434 -42808055 + AluSx SINE Alu 1 311 -1 380 288 114 105 chr12 101474434 101474688 -42807801 - L2 LINE L2 -76 3196 2937 1658 158 42 11 chr12 101475158 101475442 -42807047 - AluJb SINE Alu -19 293 1 260 345 42 5 chr12 101475442 101475633 -42806856 + L1ME LINE L1 5620 5817 -304 526 306 81 12 chr12 101475712 101475885 -42806604 - L2 LINE L2 -25 3247 3063 1920 132 31 10 chr12 101475991 101476280 -42806209 + AluSx SINE Alu 1 295 -17 1270 113 258 48 chr12 101476411 101476721 -42805768 - THE1C LTR MaLR 0 375 1 318 347 48 12 chr12 101476773 101476940 -42805549 - L2 LINE L2 -823 2491 2319 2163 123 0 7 chr12 101477036 101477337 -42805152 + AluSx SINE Alu 1 299 -13 195 330 151 38 chr12 101477657 101477763 -42804726 + L2 LINE L2 3133 3250 -22 369 252 14 79 chr12 101478531 101478670 -42803819 - MER5B DNA MER1_type -45 133 4 181 321 111 0 chr12 101478700 101478781 -42803708 - MIR SINE MIR -59 203 114 1906 181 27 6 chr12 101479555 101479886 -42802603 + MER58B DNA MER1_type 2 339 -2 2422 85 0 0 chr12 101480319 101480614 -42801875 + AluSg SINE Alu 1 295 -15 204 262 65 56 chr12 101481303 101481410 -42801079 + MIR SINE MIR 53 160 -102 391 224 37 19 chr12 101481413 101481520 -42800969 + L1MB8 LINE L1 6068 6176 -2 335 146 0 0 chr12 101481537 101481592 -42800897 + FLAM_A SINE Alu 76 130 -3 796 164 15 8 chr12 101481614 101481748 -42800741 + AluJo SINE Alu 2 136 -176 184 262 0 0 chr12 101482295 101482337 -42800152 + L2 LINE L2 3216 3257 -15 3098 156 60 35 chr12 101482684 101483008 -42799481 + L1 LINE L1 3387 3701 -2445 2201 99 0 3 chr12 101483008 101483344 -42799145 + AluSq SINE Alu 1 335 0 3098 156 60 35 chr12 101483344 101483653 -42798836 + L1 LINE L1 3701 4037 -2109 351 0 0 0 chr12 101484386 101484425 -42798064 + (T)n Simple_repeat Simple_repeat 1 39 0 321 354 76 54 chr12 101484974 101485251 -42797238 + L2 LINE L2 2921 3203 -69 327 333 8 48 chr12 101485775 101485901 -42796588 + MIR3 SINE MIR 15 135 -73 734 274 131 36 chr12 101485921 101486333 -42796156 + MLT1J LTR MaLR 1 451 -60 253 297 31 0 chr12 101486510 101486574 -42795915 + MIR SINE MIR 82 147 -61 427 298 173 12 chr12 101486612 101486780 -42795709 + MIR SINE MIR 20 214 -48 1033 178 114 0 chr12 101486871 101487090 -42795399 - MIR SINE MIR 0 262 19 314 284 54 28 chr12 101487986 101488200 -42794289 + L1MC4a LINE L1 5754 5966 -155 223 271 68 0 chr12 101488369 101488428 -42794061 + L2 LINE L2 3207 3269 -3 678 259 58 10 chr12 101489378 101489583 -42792906 - MIR SINE MIR -1 261 47 2312 123 0 0 chr12 101489911 101490219 -42792270 + AluSx SINE Alu 1 308 -4 2236 92 0 7 chr12 101490219 101490532 -42791957 + AluY SINE Alu 1 311 0 1389 246 124 16 chr12 101490697 101491189 -42791300 + L2 LINE L2 1895 2439 -875 1134 270 48 31 chr12 101491196 101491588 -42790901 + L2 LINE L2 2889 3287 -26 31 44 0 0 chr12 101491805 101491850 -42790639 + AT_rich Low_complexity Low_complexity 1 45 0 365 267 12 0 chr12 101492260 101492346 -42790143 + MIR SINE MIR 176 262 0 1742 162 0 117 chr12 101492436 101492830 -42789659 - MER7A DNA MER2_type 0 346 1 542 226 174 16 chr12 101493176 101493366 -42789123 - MIR SINE MIR -33 229 10 444 290 45 19 chr12 101494002 101494157 -42788332 - L2 LINE L2 -12 3260 3102 1049 258 59 51 chr12 101494168 101494249 -42788240 + L2 LINE L2 2919 2998 -315 2578 175 76 0 chr12 101494249 101494683 -42787806 - MLT1C LTR MaLR 0 467 1 1049 258 59 51 chr12 101494683 101494993 -42787496 + L2 LINE L2 2998 3313 0 233 258 169 8 chr12 101495152 101495276 -42787213 - L2 LINE L2 -1427 1887 1744 5345 158 33 32 chr12 101495640 101496541 -42785948 + L1MA9 LINE L1 4443 5342 -970 1638 175 24 14 chr12 101496541 101496832 -42785657 + AluJo SINE Alu 1 294 -18 5345 158 33 32 chr12 101496832 101497787 -42784702 + L1MA9 LINE L1 5342 6310 -2 356 289 16 15 chr12 101497823 101497970 -42784519 + L1M4 LINE L1 2 428 -6218 4050 229 25 45 chr12 101498263 101499804 -42782685 + L1M4 LINE L1 816 2424 -4222 739 255 111 8 chr12 101500113 101500348 -42782141 + MIR SINE MIR 2 260 -2 312 222 210 0 chr12 101500735 101500816 -42781673 - L2 LINE L2 0 3313 3216 * 381 256 26 34 chr12 101500809 101500926 -42781563 + MIR SINE MIR 137 252 -10 2100 136 0 0 chr12 101501340 101501651 -42780838 + AluSx SINE Alu 1 311 0 1720 134 20 0 chr12 101502419 101502673 -42779816 + AluSq SINE Alu 1 259 -54 360 0 0 0 chr12 101503135 101503175 -42779314 + (T)n Simple_repeat Simple_repeat 1 40 0 879 227 96 5 chr12 101503184 101503404 -42779085 + MIR SINE MIR 19 258 -4 334 300 20 0 chr12 101503564 101503664 -42778825 - MIR SINE MIR -160 102 1 357 285 114 16 chr12 101504079 101504202 -42778287 + MIR SINE MIR 31 165 -97 226 235 118 0 chr12 101504241 101504309 -42778180 + L1MC/D LINE L1 5510 5585 -536 240 246 77 0 chr12 101504333 101504398 -42778091 - MIR SINE MIR -13 249 180 580 194 223 105 chr12 101504481 101504862 -42777627 + MLT1H LTR MaLR 120 545 -4 874 208 64 0 chr12 101504865 101505038 -42777451 - MIR SINE MIR -77 185 2 528 275 34 0 chr12 101505041 101505190 -42777299 + L1MC/D LINE L1 5584 5737 -2071 3972 163 13 2 chr12 101505200 101505837 -42776652 + Tigger1 DNA MER2_type 1 644 -1774 925 84 0 0 chr12 101505832 101505951 -42776538 + Tigger1 DNA MER2_type 1040 1158 -1260 * 6267 111 53 25 chr12 101505947 101506791 -42775698 + Tigger1 DNA MER2_type 1369 2249 -169 2188 87 4 0 chr12 101506791 101507089 -42775400 + AluSp SINE Alu 6 304 0 6267 111 53 25 chr12 101507089 101507264 -42775225 + Tigger1 DNA MER2_type 2249 2418 0 1689 161 10 17 chr12 101507298 101507596 -42774893 + AluJo SINE Alu 1 296 -16 261 0 0 0 chr12 101507596 101507625 -42774864 + (TA)n Simple_repeat Simple_repeat 2 30 0 827 143 0 3 chr12 101507997 101508172 -42774317 + AluJ SINE Alu 84 307 -5 1930 152 109 6 chr12 101508410 101508740 -42773749 - MLT1A1 LTR MaLR 0 365 2 180 288 30 15 chr12 101508998 101509064 -42773425 + MIR SINE MIR 2 68 -194 * 679 247 21 42 chr12 101509054 101509244 -42773245 + L2 LINE L2 3106 3291 -22 200 353 10 49 chr12 101509259 101509361 -42773128 + MER5A DNA MER1_type 49 146 -43 * 402 348 0 29 chr12 101509273 101509411 -42773078 - MER5A DNA MER1_type -48 141 8 223 85 43 0 chr12 101509988 101510035 -42772454 + T-rich Low_complexity Low_complexity 2 50 0 22 56 0 0 chr12 101511004 101511040 -42771449 + GC_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr12 101511173 101511210 -42771279 + GC_rich Low_complexity Low_complexity 1 37 0 1785 97 7 48 chr12 101511614 101511924 -42770565 - AluJb SINE Alu -15 297 1 665 254 43 14 chr12 101512985 101513194 -42769295 - MIR SINE MIR -46 216 2 312 226 12 24 chr12 101513273 101513357 -42769132 + MIR3 SINE MIR 99 181 -27 2114 136 0 10 chr12 101513596 101513906 -42768583 - AluSx SINE Alu -5 307 1 2304 110 0 0 chr12 101514447 101514755 -42767734 - AluSq SINE Alu -5 308 1 540 322 77 0 chr12 101515183 101515391 -42767098 - MIR SINE MIR -11 251 28 234 193 140 0 chr12 101515454 101515511 -42766978 + L1M4c LINE L1 1580 1644 -4740 1039 163 5 37 chr12 101515624 101515814 -42766675 - AluJo SINE Alu -127 185 2 22 0 0 0 chr12 101515906 101515928 -42766561 + AT_rich Low_complexity Low_complexity 1 22 0 276 336 152 0 chr12 101516328 101516453 -42766036 + L2 LINE L2 3125 3268 -4 1458 159 4 4 chr12 101516625 101516858 -42765631 + AluJb SINE Alu 65 297 -15 360 302 19 28 chr12 101517325 101517431 -42765058 - MIR SINE MIR -130 132 28 2011 128 34 0 chr12 101517439 101517735 -42764754 + AluSx SINE Alu 1 306 -6 275 295 13 0 chr12 101517959 101518037 -42764452 + MER117 DNA MER1_type 54 132 -65 281 294 31 55 chr12 101518048 101518211 -42764278 - L2 LINE L2 -458 2856 2698 558 264 76 84 chr12 101518816 101519199 -42763290 + HAL1b LINE L1 86 465 -883 1231 167 5 32 chr12 101519199 101519420 -42763069 + AluJo SINE Alu 84 298 -14 306 0 0 0 chr12 101519422 101519456 -42763033 + (CA)n Simple_repeat Simple_repeat 2 35 0 1485 209 110 54 chr12 101519515 101520070 -42762419 + HAL1b LINE L1 546 1131 -217 300 27 0 0 chr12 101520077 101520114 -42762375 + (TC)n Simple_repeat Simple_repeat 1 37 0 418 218 108 14 chr12 101520117 101520274 -42762215 + HAL1b LINE L1 1184 6119 -2 442 260 46 17 chr12 101520318 101520491 -42761998 + L1ME4a LINE L1 5845 6022 -99 1821 124 3 35 chr12 101520555 101520837 -42761652 + AluSx SINE Alu 1 273 -39 418 156 0 0 chr12 101520839 101520903 -42761586 + Alu SINE Alu 238 301 -11 861 223 0 11 chr12 101520908 101521083 -42761406 + AluJo SINE Alu 1 173 -139 10217 93 8 7 chr12 101521083 101522527 -42759962 + L1P LINE L1 1927 3372 -2774 1802 220 25 90 chr12 101522523 101523204 -42759285 - L1MC5 LINE L1 -759 7202 6627 * 1574 114 0 5 chr12 101523298 101523518 -42758971 + AluSq SINE Alu 76 294 -19 891 213 13 0 chr12 101523708 101523863 -42758626 - FRAM SINE Alu -8 158 2 401 286 89 62 chr12 101524316 101524641 -42757848 - HAL1b LINE L1 -915 433 100 1905 129 0 21 chr12 101524730 101525009 -42757480 - AluSx SINE Alu -39 273 1 1271 165 180 12 chr12 101525293 101525548 -42756941 - AluJo SINE Alu -14 298 1 206 268 0 0 chr12 101525780 101525836 -42756653 + C-rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr12 101526317 101526338 -42756151 + AT_rich Low_complexity Low_complexity 1 21 0 406 288 45 0 chr12 101526795 101526906 -42755583 - L2 LINE L2 -9 3263 3148 230 191 64 0 chr12 101527563 101527610 -42754879 - L2 LINE L2 -3 3310 3261 1682 160 11 0 chr12 101527668 101527931 -42754558 + AluJb SINE Alu 1 266 -46 958 264 0 14 chr12 101528332 101528548 -42753941 + MIR SINE MIR 12 224 -38 1587 193 28 3 chr12 101528551 101528841 -42753648 + AluJb SINE Alu 1 297 -15 459 279 211 10 chr12 101528927 101529135 -42753354 - L3 LINE CR1 0 1577 1328 767 261 28 0 chr12 101529200 101529376 -42753113 + MIR SINE MIR 28 208 -54 327 214 52 187 chr12 101529427 101529544 -42752945 - L3 LINE CR1 -343 1234 1103 231 88 0 0 chr12 101529544 101529578 -42752911 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1833 123 0 35 chr12 101529580 101529865 -42752624 - AluJb SINE Alu -17 295 21 327 214 52 187 chr12 101529865 101529892 -42752597 - L3 LINE CR1 -475 1102 1073 2131 132 54 12 chr12 101529892 101530225 -42752264 + MER7A DNA MER2_type 2 346 0 327 214 52 187 chr12 101530225 101530445 -42752044 - L3 LINE CR1 -504 1073 916 916 207 155 0 chr12 101530446 101530639 -42751850 - MER58A DNA MER1_type -1 223 1 692 308 28 20 chr12 101530696 101530946 -42751543 - L3 LINE CR1 -713 864 613 191 316 149 53 chr12 101530992 101531220 -42751269 + L2 LINE L2 3007 3256 -16 * 196 133 0 0 chr12 101531191 101531221 -42751268 + MIR SINE MIR 224 253 -9 318 67 0 0 chr12 101531224 101531269 -42751220 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 1663 198 3 7 chr12 101531329 101531622 -42750867 + AluJo SINE Alu 1 292 -20 1017 110 0 22 chr12 101532392 101532528 -42749961 - FLAM_C SINE Alu 0 133 1 2316 99 0 3 chr12 101532681 101532984 -42749505 - AluSq SINE Alu -11 302 1 24 53 0 0 chr12 101533610 101533648 -42748841 + AT_rich Low_complexity Low_complexity 1 38 0 1889 161 96 25 chr12 101534061 101534458 -42748031 + LTR2B LTR ERV1 66 490 0 512 233 78 0 chr12 101534497 101534626 -42747863 + MIR SINE MIR 124 262 0 3864 142 65 15 chr12 101535314 101535438 -42747051 + MER50 LTR ERV1 1 117 -617 2059 98 0 4 chr12 101535438 101535715 -42746774 + AluSx SINE Alu 1 276 -36 185 35 69 0 chr12 101535716 101535745 -42746744 + A-rich Low_complexity Low_complexity 3 33 0 3864 142 65 15 chr12 101535745 101536295 -42746194 + MER50 LTR ERV1 116 711 -23 545 86 0 0 chr12 101537031 101537101 -42745388 - THE1C LTR MaLR -305 70 1 180 267 33 0 chr12 101537290 101537350 -42745139 + L3 LINE CR1 741 802 -775 997 338 134 23 chr12 101537411 101538097 -42744392 + L3 LINE CR1 815 1576 -1 2205 92 0 4 chr12 101538197 101538498 -42743991 + AluSc SINE Alu 1 300 0 939 123 43 166 chr12 101539061 101539313 -42743176 + L1MB8 LINE L1 5108 5319 -827 2051 147 0 0 chr12 101539313 101539628 -42742861 + AluSx SINE Alu 1 312 0 939 123 43 166 chr12 101539628 101539677 -42742812 + L1MB8 LINE L1 5319 5372 -774 41816 60 6 15 chr12 101539687 101545877 -42736612 + L1PA5 LINE L1 11 6145 -9 3503 221 30 9 chr12 101545880 101546675 -42735814 + L1MB8 LINE L1 5360 6171 -7 755 172 0 0 chr12 101546834 101546950 -42735539 + FLAM_A SINE Alu 1 116 -17 21 0 0 0 chr12 101546951 101546972 -42735517 + AT_rich Low_complexity Low_complexity 1 21 0 2069 130 11 0 chr12 101547010 101547294 -42735195 - AluSx SINE Alu -25 287 1 303 264 212 14 chr12 101547329 101547541 -42734948 + MIR SINE MIR 9 262 0 239 333 0 0 chr12 101548826 101548907 -42733582 - MIR SINE MIR -83 125 45 367 270 102 15 chr12 101548988 101549125 -42733364 + MIR SINE MIR 23 171 -91 527 256 96 9 chr12 101549357 101549576 -42732913 + L1ME4a LINE L1 5882 6119 -2 1496 171 36 36 chr12 101549600 101549909 -42732580 - AluJb SINE Alu -3 309 1 207 302 16 0 chr12 101550754 101550817 -42731672 - MIR3 SINE MIR -43 165 102 193 311 0 0 chr12 101550881 101550942 -42731547 - MIR SINE MIR -108 100 40 2812 13 0 0 chr12 101552338 101552637 -42729852 + AluYa5 SINE Alu 1 299 -12 381 246 42 8 chr12 101552774 101552892 -42729597 + MIR SINE MIR 26 147 -115 2504 86 0 0 chr12 101553172 101553476 -42729013 + AluSq SINE Alu 1 304 -9 2220 135 57 43 chr12 101553496 101553917 -42728572 - MSTA LTR MaLR -1 427 1 25 0 0 0 chr12 101554186 101554211 -42728278 + AT_rich Low_complexity Low_complexity 1 25 0 1972 201 41 73 chr12 101554252 101554276 -42728213 + L1MD3 LINE L1 6589 6612 -1383 2352 97 3 6 chr12 101554276 101554587 -42727902 - AluSg SINE Alu 0 310 1 1972 201 41 73 chr12 101554587 101554653 -42727836 + L1MD3 LINE L1 6612 6679 -1316 198 0 0 0 chr12 101554653 101554675 -42727814 + (CA)n Simple_repeat Simple_repeat 2 23 0 1972 201 41 73 chr12 101554675 101555202 -42727287 + L1MD3 LINE L1 6679 7144 -851 467 238 65 11 chr12 101555344 101555505 -42726984 + L1MD3 LINE L1 7071 7228 -580 626 142 44 18 chr12 101555505 101555618 -42726871 + MLT1F1 LTR MaLR 1 116 -451 1189 198 89 0 chr12 101555623 101555870 -42726619 + L1MD3 LINE L1 7400 7668 -327 2437 118 11 25 chr12 101555915 101556069 -42726420 - MSTB1 LTR MaLR -72 360 205 1764 187 0 0 chr12 101556069 101556368 -42726121 + AluJb SINE Alu 1 299 -13 2437 118 11 25 chr12 101556368 101556578 -42725911 - MSTB1 LTR MaLR -227 205 1 960 171 57 35 chr12 101556578 101556806 -42725683 + L1MD3 LINE L1 7664 7896 -99 2444 90 0 0 chr12 101556806 101557106 -42725383 + AluSx SINE Alu 1 300 -12 1039 159 159 89 chr12 101557672 101557943 -42724546 + AluJo SINE Alu 3 292 -10 1287 221 45 30 chr12 101558040 101558487 -42724002 + MLT1H LTR MaLR 2 549 0 271 221 229 8 chr12 101558516 101558638 -42723851 - L1ME4a LINE L1 -3 6118 5970 375 266 86 76 chr12 101558683 101558973 -42723516 - L1ME4a LINE L1 -222 5899 5607 1115 266 97 40 chr12 101558975 101558996 -42723493 + MLT1L LTR MaLR 23 41 -574 285 29 0 0 chr12 101558996 101559030 -42723459 + (CA)n Simple_repeat Simple_repeat 2 35 0 1115 266 97 40 chr12 101559030 101559554 -42722935 + MLT1L LTR MaLR 41 599 -16 346 302 156 35 chr12 101559807 101560178 -42722311 - L1ME4a LINE L1 -1726 4420 4005 31 88 0 0 chr12 101560201 101560281 -42722208 + AT_rich Low_complexity Low_complexity 1 80 0 2172 119 23 0 chr12 101560704 101561006 -42721483 - AluSx SINE Alu -3 309 1 557 179 166 117 chr12 101561528 101561642 -42720847 - MLT1H LTR MaLR -315 234 127 2149 97 0 11 chr12 101561642 101561920 -42720569 + AluSx SINE Alu 1 275 -37 267 103 0 0 chr12 101561925 101561964 -42720525 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 557 179 166 117 chr12 101561964 101562066 -42720423 - MLT1H LTR MaLR -425 124 1 198 297 178 17 chr12 101562487 101562605 -42719884 + MIR3 SINE MIR 58 194 -14 2054 128 24 3 chr12 101563184 101563481 -42719008 - AluSx SINE Alu -9 303 1 871 273 78 39 chr12 101563483 101563842 -42718647 - L1MC4a LINE L1 -1875 5933 5555 674 156 172 68 chr12 101563842 101564034 -42718455 + MER58C DNA MER1_type 3 214 -1 871 273 78 39 chr12 101564034 101564085 -42718404 - L1MC4a LINE L1 -2253 5555 5507 185 340 0 0 chr12 101564288 101564341 -42718148 - MIR3 SINE MIR -6 202 150 2191 123 3 3 chr12 101564448 101564758 -42717731 + AluSx SINE Alu 1 310 -2 2232 119 3 6 chr12 101565028 101565339 -42717150 + AluSg SINE Alu 1 310 0 224 286 0 0 chr12 101565354 101565410 -42717079 - MIR SINE MIR -123 85 30 4103 175 52 24 chr12 101565827 101566694 -42715795 + L1 LINE L1 4 894 -5955 7350 151 59 11 chr12 101566700 101567330 -42715159 + L1 LINE L1 4502 5100 -1748 2426 147 48 7 chr12 101567330 101567745 -42714744 - MSTB1 LTR MaLR 0 432 1 7350 151 59 11 chr12 101567745 101568484 -42714005 + L1 LINE L1 5100 5937 -911 2109 41 49 0 chr12 101618488 101618754 -42663735 - AluY SINE Alu -32 279 1 1609 181 0 28 chr12 101619132 101619453 -42663036 - AluJo SINE Alu 0 312 1 305 276 58 149 chr12 101620799 101620933 -42661556 - L2 LINE L2 -550 2764 2619 3254 144 67 0 chr12 101620933 101621452 -42661037 + MER41C LTR ERV1 1 554 0 305 276 58 149 chr12 101621452 101621822 -42660667 - L2 LINE L2 -695 2619 2351 2076 136 0 3 chr12 101621822 101622132 -42660357 + AluSx SINE Alu 1 309 -3 305 276 58 149 chr12 101622132 101622395 -42660094 - L2 LINE L2 -963 2351 2066 887 150 0 0 chr12 101622469 101622602 -42659887 - FLAM_C SINE Alu 0 133 1 614 283 54 22 chr12 101622634 101622818 -42659671 + MIR SINE MIR 2 191 -71 959 256 95 41 chr12 101622861 101623228 -42659261 - L2 LINE L2 -38 3275 2889 465 196 6 143 chr12 101623599 101623698 -42658791 + LTR67 LTR ERVL 405 473 -84 704 132 0 0 chr12 101623698 101623804 -42658685 - L1MA3 LINE L1 0 6305 6200 465 196 6 143 chr12 101623804 101623872 -42658617 + LTR67 LTR ERVL 473 549 -8 979 199 6 6 chr12 101624601 101624772 -42657717 - MLT2B1 LTR ERVL -82 438 268 526 92 11 23 chr12 101624764 101624851 -42657638 + MLT2B1 LTR ERVL 435 520 0 * 1807 129 0 18 chr12 101624985 101625257 -42657232 - AluSx SINE Alu -45 267 1 476 219 55 14 chr12 101625795 101625941 -42656548 + MER104 DNA Tc2 28 179 -1 2389 81 3 0 chr12 101625966 101626274 -42656215 - AluY SINE Alu -2 309 1 1986 101 9 70 chr12 101626528 101626856 -42655633 - AluSq SINE Alu -5 308 1 658 237 46 0 chr12 101627611 101627742 -42654747 + FRAM SINE Alu 2 138 -38 378 143 0 0 chr12 101627742 101627805 -42654684 + (GA)n Simple_repeat Simple_repeat 2 64 0 2280 276 80 22 chr12 101627945 101629072 -42653417 - L2 LINE L2 -5 3308 2126 396 301 163 0 chr12 101629442 101629595 -42652894 + MIR SINE MIR 54 231 -31 397 274 331 0 chr12 101629618 101629793 -42652696 - MIR SINE MIR -28 234 2 237 333 0 0 chr12 101630205 101630295 -42652194 + (TG)n Simple_repeat Simple_repeat 1 90 0 885 83 29 112 chr12 101630473 101630567 -42651922 + MER53 DNA DNA 1 72 -117 2262 78 0 0 chr12 101630567 101630882 -42651607 + AluY SINE Alu 1 315 0 885 83 29 112 chr12 101630882 101630991 -42651498 + MER53 DNA DNA 72 188 -1 3509 129 2 4 chr12 101631062 101631574 -42650915 - MER9 LTR ERVK 0 511 1 461 186 41 0 chr12 101632067 101632164 -42650325 - Charlie1 DNA MER1_type -263 2498 2398 1721 176 0 0 chr12 101632173 101632462 -42650027 + AluSx SINE Alu 2 290 -22 308 224 59 47 chr12 101633441 101633526 -42648963 - MIR SINE MIR -149 113 28 826 126 0 52 chr12 101633678 101633813 -42648676 + FLAM_C SINE Alu 1 128 -15 319 294 12 0 chr12 101633973 101634058 -42648431 - MIR SINE MIR -6 256 171 39 47 0 35 chr12 101634216 101634264 -42648225 + AT_rich Low_complexity Low_complexity 1 46 -37 2246 77 40 0 chr12 101634264 101634563 -42647926 + AluY SINE Alu 1 311 0 39 47 0 35 chr12 101634563 101634600 -42647889 + AT_rich Low_complexity Low_complexity 46 83 0 2269 103 0 3 chr12 101634816 101635127 -42647362 + AluSx SINE Alu 2 311 -1 268 299 122 0 chr12 101635440 101635547 -42646942 + LTR67 LTR ERVL 412 531 -26 2025 125 3 0 chr12 101635707 101636012 -42646477 - AluSx SINE Alu -6 306 1 299 325 63 48 chr12 101637300 101637568 -42644921 + ERVL LTR ERVL 353 624 -5140 1850 149 54 57 chr12 101637994 101638194 -42644295 - THE1C LTR MaLR 0 375 175 2092 81 13 17 chr12 101638194 101638492 -42643997 - AluSc SINE Alu -11 298 2 1850 149 54 57 chr12 101638492 101638661 -42643828 - THE1C LTR MaLR -200 175 7 1318 300 73 18 chr12 101638959 101639565 -42642924 + ERVL LTR ERVL 1664 2302 -3462 849 213 75 0 chr12 101639565 101639739 -42642750 - MIR SINE MIR -48 214 28 1806 144 21 0 chr12 101639765 101640050 -42642439 + AluJo SINE Alu 1 291 -21 350 290 9 9 chr12 101640059 101640166 -42642323 + ERVL LTR ERVL 5272 5378 -386 552 253 43 86 chr12 101640184 101640417 -42642072 + MIR SINE MIR 3 225 -37 2096 117 3 0 chr12 101640468 101640775 -42641714 - AluSx SINE Alu -4 308 1 883 0 0 18 chr12 101640876 101640985 -42641504 + (TTC)n Simple_repeat Simple_repeat 3 109 0 917 98 30 0 chr12 101640986 101641154 -42641335 - FRAM SINE Alu 0 181 10 2071 129 0 16 chr12 101641353 101641670 -42640819 - AluSx SINE Alu 0 312 1 385 285 46 8 chr12 101641833 101641963 -42640526 + L2 LINE L2 3177 3311 -2 1624 246 137 39 chr12 101641987 101642527 -42639962 - MLT1E LTR MaLR 0 593 1 2194 75 0 4 chr12 101643117 101643423 -42639066 + AluY SINE Alu 1 305 0 2028 80 10 37 chr12 101643433 101643763 -42638726 + AluY SINE Alu 1 311 0 588 195 0 49 chr12 101643841 101643964 -42638525 + MIR SINE MIR 45 161 -101 216 224 17 69 chr12 101643960 101644018 -42638471 - MIR SINE MIR -56 206 152 * 1013 202 96 102 chr12 101645389 101645605 -42636884 - LTR16A1 LTR ERVL 0 457 241 1762 133 57 0 chr12 101645605 101645884 -42636605 + AluJb SINE Alu 1 295 -17 1013 202 96 102 chr12 101645884 101646089 -42636400 - LTR16A1 LTR ERVL -216 241 36 2044 124 3 0 chr12 101646089 101646387 -42636102 + AluSx SINE Alu 1 299 -13 2244 77 0 3 chr12 101646387 101646697 -42635792 + AluSq SINE Alu 1 309 0 1013 202 96 102 chr12 101646697 101646732 -42635757 - LTR16A1 LTR ERVL -419 38 1 2061 129 0 0 chr12 101647137 101647439 -42635050 + AluSx SINE Alu 1 302 -10 485 167 83 21 chr12 101647656 101647752 -42634737 + MIR SINE MIR 64 165 -97 1868 171 0 10 chr12 101647809 101648107 -42634382 - AluJo SINE Alu -17 295 1 607 277 103 50 chr12 101648381 101648720 -42633769 + MLT1J2 LTR MaLR 73 429 -21 2202 118 0 3 chr12 101648887 101649191 -42633298 + AluSg SINE Alu 1 303 -7 321 158 237 0 chr12 101649235 101649311 -42633178 - MER58A DNA MER1_type -1 223 130 869 108 15 0 chr12 101649312 101649442 -42633047 + AluJb SINE Alu 5 136 -176 721 221 0 20 chr12 101649459 101649608 -42632881 - MER58A DNA MER1_type 0 146 1 2220 110 0 0 chr12 101649941 101650231 -42632258 - AluSx SINE Alu -22 290 1 323 274 120 51 chr12 101650350 101650467 -42632022 - MIR SINE MIR -124 138 14 757 221 94 6 chr12 101650710 101650891 -42631598 - MIR SINE MIR -2 260 64 2272 109 3 3 chr12 101650892 101651203 -42631286 + AluSq SINE Alu 1 311 -2 418 289 104 14 chr12 101651310 101651521 -42630968 + L2 LINE L2 3080 3309 -4 549 224 31 3 chr12 101651620 101651758 -42630731 + L1P4 LINE L1 5517 5660 -501 2863 135 56 56 chr12 101651789 101652311 -42630178 + L1MB4 LINE L1 5599 6120 -60 2315 102 0 0 chr12 101652311 101652605 -42629884 + AluSx SINE Alu 1 294 -18 2863 135 56 56 chr12 101652605 101652617 -42629872 + L1MB4 LINE L1 6120 6131 -49 1832 153 21 7 chr12 101652617 101652904 -42629585 + AluJb SINE Alu 1 291 -21 2863 135 56 56 chr12 101652904 101652940 -42629549 + L1MB4 LINE L1 6130 6170 -10 2272 104 0 0 chr12 101653590 101653897 -42628592 - AluSx SINE Alu -5 307 1 361 256 125 17 chr12 101654225 101654364 -42628125 + MIR SINE MIR 3 145 -63 1688 164 19 75 chr12 101654421 101654668 -42627821 + MLT1A1 LTR MaLR 1 222 -143 1925 136 27 0 chr12 101654668 101654969 -42627520 + AluSx SINE Alu 1 309 -3 1688 164 19 75 chr12 101654969 101655092 -42627397 + MLT1A1 LTR MaLR 222 350 -15 827 292 165 44 chr12 101656040 101656136 -42626353 - L2 LINE L2 -693 2621 2538 2284 100 0 0 chr12 101656136 101656426 -42626063 + AluSx SINE Alu 2 291 -21 827 292 165 44 chr12 101656426 101656960 -42625529 - L2 LINE L2 -776 2538 1915 552 150 0 0 chr12 101657074 101657154 -42625335 + FLAM_A SINE Alu 43 122 -20 1653 75 0 0 chr12 101657186 101657413 -42625076 - AluY SINE Alu 0 309 83 2100 125 0 0 chr12 101657743 101658051 -42624438 - AluSg SINE Alu 0 308 1 347 309 110 0 chr12 101658062 101658198 -42624291 + L2 LINE L2 3159 3309 -4 2005 160 88 72 chr12 101658343 101658799 -42623690 + MLT1C LTR MaLR 1 463 -4 441 247 117 0 chr12 101659362 101659524 -42622965 - LTR33A LTR ERVL -3 520 340 838 202 64 6 chr12 101659527 101659700 -42622789 - MER20 DNA MER1_type -5 214 32 333 193 220 38 chr12 101659763 101660005 -42622484 - LTR33A LTR ERVL -175 348 9 354 211 118 0 chr12 101660300 101660376 -42622113 + MER69 DNA AcHobo 197 281 -2245 1570 297 5 30 chr12 101660379 101660820 -42621669 + MER115 DNA AcHobo 5 434 -259 1775 194 3 0 chr12 101660859 101661168 -42621321 + AluJo SINE Alu 1 310 -2 525 135 0 0 chr12 101661168 101661257 -42621232 + (GA)n Simple_repeat Simple_repeat 1 89 0 219 36 0 0 chr12 101661262 101661290 -42621199 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 2483 192 85 37 chr12 101661290 101662061 -42620428 + MER69 DNA AcHobo 1667 2523 -3 466 239 59 95 chr12 101662829 101663051 -42619438 + HAL1 LINE L1 1 214 -2293 3901 176 131 27 chr12 101663431 101664179 -42618310 + LTR1B LTR ERV1 1 826 0 757 258 32 0 chr12 101664200 101664386 -42618103 - MIR SINE MIR -32 230 39 776 179 70 0 chr12 101664566 101664725 -42617764 + MLT1D LTR MaLR 1 173 -364 479 234 0 0 chr12 101665591 101665685 -42616804 - MER117 DNA MER1_type -36 161 68 818 126 0 0 chr12 101665715 101665857 -42616632 - AluJb SINE Alu 0 313 172 293 218 0 0 chr12 101665857 101665912 -42616577 - MER117 DNA MER1_type -142 55 1 307 238 57 29 chr12 101666133 101666238 -42616251 - MLT1K LTR MaLR -342 246 139 355 253 11 11 chr12 101666425 101666512 -42615977 - MLT1K LTR MaLR -462 126 40 1823 114 28 4 chr12 101667146 101667400 -42615089 + AluSq SINE Alu 1 260 -53 424 280 172 61 chr12 101667465 101667826 -42614663 - MLT1K LTR MaLR -7 581 181 2118 104 3 11 chr12 101668797 101669084 -42613405 + AluSx SINE Alu 1 285 -27 2352 100 3 0 chr12 101669146 101669446 -42613043 - AluSg SINE Alu -9 301 1 497 295 98 8 chr12 101669453 101669687 -42612802 + L1ME4a LINE L1 5864 6118 -3 1684 163 32 7 chr12 101669775 101670052 -42612437 + AluJo SINE Alu 9 292 -20 801 102 47 8 chr12 101670899 101671027 -42611462 + AluJb SINE Alu 1 133 -179 1787 146 20 33 chr12 101672233 101672535 -42609954 - AluJo SINE Alu -14 298 1 689 107 155 10 chr12 101672558 101672661 -42609828 + AluSq/x SINE Alu 2 119 -194 190 0 32 32 chr12 101672661 101672692 -42609797 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 1488 117 0 57 chr12 101672703 101672933 -42609556 + AluSg/x SINE Alu 83 299 -13 244 198 73 94 chr12 101673057 101673153 -42609336 + MIR SINE MIR 20 113 -149 26 50 0 0 chr12 101673673 101673713 -42608776 + AT_rich Low_complexity Low_complexity 1 40 0 852 249 116 0 chr12 101673774 101673999 -42608490 - MIR SINE MIR -11 251 1 1086 144 134 25 chr12 101674123 101674324 -42608165 - AluJb SINE Alu -9 303 81 449 265 85 1 chr12 101674377 101674512 -42607977 + MIR SINE MIR 19 160 -48 2405 95 3 0 chr12 101674909 101675215 -42607274 + AluSp SINE Alu 1 307 -6 288 132 0 38 chr12 101675222 101675275 -42607214 - L2 LINE L2 -2 3311 3261 21 0 0 0 chr12 101675282 101675303 -42607186 + AT_rich Low_complexity Low_complexity 1 21 0 2302 88 0 7 chr12 101675457 101675754 -42606735 + AluSg SINE Alu 1 295 -15 1699 170 20 29 chr12 101676581 101676887 -42605602 - AluJo SINE Alu -9 303 1 2996 186 39 30 chr12 101676950 101676988 -42605501 - L1MB7 LINE L1 -34 6150 6114 2141 110 7 0 chr12 101676988 101677278 -42605211 + AluSx SINE Alu 1 292 -20 2996 186 39 30 chr12 101677278 101677877 -42604612 - L1MB7 LINE L1 -70 6114 5507 1818 138 3 24 chr12 101678166 101678462 -42604027 - AluJb SINE Alu -22 290 1 1837 126 61 4 chr12 101678621 101678899 -42603590 - AluSx SINE Alu -18 294 1 2368 68 3 7 chr12 101679093 101679386 -42603103 - AluSg SINE Alu -14 296 5 1578 183 13 30 chr12 101679405 101679706 -42602783 - AluJo SINE Alu -16 296 1 2152 122 0 0 chr12 101681407 101681701 -42600788 - AluSx SINE Alu -18 294 1 1007 77 0 0 chr12 101681885 101682015 -42600474 + AluY SINE Alu 176 305 -6 431 179 0 0 chr12 101682018 101682085 -42600404 + AluJb SINE Alu 108 174 -138 1959 154 3 3 chr12 101682219 101682518 -42599971 + AluJb SINE Alu 1 299 -13 960 182 11 23 chr12 101682522 101682698 -42599791 + FAM SINE Alu 2 175 0 267 323 100 67 chr12 101682709 101683068 -42599421 - L2 LINE L2 -50 3263 2893 236 393 0 9 chr12 101683102 101683209 -42599280 + L2 LINE L2 2942 3047 -225 226 330 80 0 chr12 101683267 101683355 -42599134 + L2 LINE L2 3168 3262 -10 803 241 113 104 chr12 101683944 101684135 -42598354 + L1ME4a LINE L1 5476 5664 -457 1779 141 90 48 chr12 101684135 101684468 -42598021 + MER7A DNA MER2_type 1 345 -1 803 241 113 104 chr12 101684468 101684823 -42597666 + L1ME4a LINE L1 5664 6027 -94 191 341 112 24 chr12 101685384 101685554 -42596935 - MIR SINE MIR -27 235 51 1705 164 19 75 chr12 101686833 101686956 -42595533 - MLT1A1 LTR MaLR -15 350 222 1948 133 27 0 chr12 101686956 101687257 -42595232 - AluSx SINE Alu -3 309 1 1705 164 19 75 chr12 101687257 101687504 -42594985 - MLT1A1 LTR MaLR -143 222 1 361 256 125 17 chr12 101687561 101687700 -42594789 - MIR SINE MIR -63 145 3 2272 104 0 0 chr12 101688028 101688335 -42594154 + AluSx SINE Alu 1 307 -5 1811 150 25 7 chr12 101689021 101689307 -42593182 - AluJb SINE Alu -21 291 1 2132 129 0 0 chr12 101689319 101689614 -42592875 - AluSx SINE Alu -17 295 1 1007 77 0 0 chr12 101689798 101689928 -42592561 + AluY SINE Alu 176 305 -6 431 179 0 0 chr12 101689931 101689998 -42592491 + AluJb SINE Alu 108 174 -138 1959 154 3 3 chr12 101690132 101690431 -42592058 + AluJb SINE Alu 1 299 -13 960 182 11 23 chr12 101690435 101690611 -42591878 + FAM SINE Alu 2 175 0 267 323 100 67 chr12 101690622 101690981 -42591508 - L2 LINE L2 -50 3263 2893 236 393 0 9 chr12 101691015 101691122 -42591367 + L2 LINE L2 2942 3047 -225 226 330 80 0 chr12 101691180 101691268 -42591221 + L2 LINE L2 3168 3262 -10 803 241 113 104 chr12 101691857 101692048 -42590441 + L1ME4a LINE L1 5476 5664 -457 1779 141 90 48 chr12 101692048 101692381 -42590108 + MER7A DNA MER2_type 1 345 -1 803 241 113 104 chr12 101692381 101692736 -42589753 + L1ME4a LINE L1 5664 6027 -94 191 341 112 24 chr12 101693289 101693459 -42589030 - MIR SINE MIR -27 235 51 180 0 0 0 chr12 101693719 101693739 -42588750 + (A)n Simple_repeat Simple_repeat 1 20 0 714 181 17 9 chr12 101693740 101693856 -42588633 + FLAM_C SINE Alu 2 118 -25 2152 134 0 0 chr12 101693960 101694258 -42588231 - AluSx SINE Alu -14 298 1 2387 73 0 3 chr12 101695065 101695366 -42587123 + AluY SINE Alu 3 302 -9 1715 158 0 0 chr12 101695926 101696180 -42586309 + AluSx SINE Alu 1 254 -58 488 235 101 17 chr12 101696413 101696532 -42585957 + FLAM_C SINE Alu 2 130 -3 1517 173 7 47 chr12 101697090 101697390 -42585099 - AluJo SINE Alu -24 288 1 309 325 77 33 chr12 101698430 101698656 -42583833 - MER102a DNA MER1_type -1 329 84 1738 124 36 25 chr12 101698656 101698931 -42583558 + AluSc SINE Alu 1 298 0 181 0 0 0 chr12 101698931 101698951 -42583538 + (CAAAA)n Simple_repeat Simple_repeat 1 180 0 22 35 0 0 chr12 101698967 101698996 -42583493 + AT_rich Low_complexity Low_complexity 1 29 0 561 275 124 54 chr12 101699097 101699596 -42582893 + L1ME4a LINE L1 5472 6020 -101 2061 99 41 10 chr12 101699670 101699963 -42582526 - AluSx SINE Alu -10 302 1 916 152 8 0 chr12 101700265 101700397 -42582092 + FLAM_C SINE Alu 1 133 0 1574 200 14 3 chr12 101700432 101700722 -42581767 + AluJo SINE Alu 1 293 -19 969 221 55 24 chr12 101700867 101701157 -42581332 + AluSq SINE Alu 1 299 -14 477 279 52 23 chr12 101701358 101701530 -42580959 + MLT1J2 LTR MaLR 253 429 -21 2233 110 0 7 chr12 101701697 101702007 -42580482 + AluSg SINE Alu 1 308 -2 2188 86 0 36 chr12 101702577 101702881 -42579608 - AluSg SINE Alu -17 293 1 1787 142 30 20 chr12 101702908 101703211 -42579278 + AluJb SINE Alu 1 306 -6 821 143 8 30 chr12 101703228 101703361 -42579128 + AluJb SINE Alu 4 133 -179 2155 120 0 10 chr12 101704146 101704446 -42578043 - AluSx SINE Alu -15 297 1 226 274 40 89 chr12 101704539 101704612 -42577877 + MIR SINE MIR 89 155 -107 1699 185 7 13 chr12 101704612 101704915 -42577574 + AluJb SINE Alu 3 303 -9 226 274 40 89 chr12 101704915 101704965 -42577524 + MIR SINE MIR 155 206 -56 357 97 113 0 chr12 101706225 101706287 -42576202 - MADE1 DNA Mariner 0 80 12 29 47 0 0 chr12 101706354 101706397 -42576092 + AT_rich Low_complexity Low_complexity 1 43 0 774 188 15 0 chr12 101706398 101706531 -42575958 - AluJo SINE Alu -176 136 2 2399 96 3 0 chr12 101706929 101707231 -42575258 - AluSp SINE Alu -10 303 1 558 139 105 0 chr12 101707639 101707725 -42574764 - AluS SINE Alu -216 96 2 21 71 0 0 chr12 101707775 101707817 -42574672 + AT_rich Low_complexity Low_complexity 1 42 0 674 122 0 0 chr12 101707817 101707907 -42574582 + FRAM SINE Alu 59 148 -28 1741 170 0 17 chr12 101708112 101708406 -42574083 - AluJo SINE Alu -21 291 3 2164 122 0 0 chr12 101708620 101708916 -42573573 - AluSx SINE Alu -16 296 1 441 158 98 0 chr12 101708940 101709022 -42573467 - FLAM_A SINE Alu -12 130 41 2375 138 75 29 chr12 101709446 101709859 -42572630 + Tigger4(Zombi) DNA MER2_type 2 433 -2298 413 125 125 50 chr12 101709863 101709943 -42572546 + Tigger4(Zombi) DNA MER2_type 2646 2731 0 2116 127 3 3 chr12 101710462 101710762 -42571727 - AluSc SINE Alu -9 300 1 1325 181 16 12 chr12 101710773 101711021 -42571468 - AluJo SINE Alu -22 290 42 1956 142 35 0 chr12 101711293 101711582 -42570907 - AluJb SINE Alu -13 299 1 509 256 36 45 chr12 101711630 101711853 -42570636 - L1MC5 LINE L1 -823 7138 6918 2511 69 3 0 chr12 101711990 101712294 -42570195 - AluY SINE Alu -6 305 1 1610 167 17 37 chr12 101712612 101712912 -42569577 - AluJo SINE Alu -16 296 3 3300 31 0 0 chr12 101713069 101713429 -42569060 - SVA Other Other -3 1383 1024 520 211 29 0 chr12 101713770 101713874 -42568615 - MIR SINE MIR -102 160 54 2443 76 0 0 chr12 101713983 101714287 -42568202 + AluY SINE Alu 1 304 -7 1308 208 10 20 chr12 101714296 101714590 -42567899 + AluJb SINE Alu 1 291 -21 2416 77 0 3 chr12 101714988 101715288 -42567201 + AluY SINE Alu 1 299 -12 417 239 102 18 chr12 101715562 101715729 -42566760 + L1ME4a LINE L1 5938 6118 -3 1669 166 32 7 chr12 101715817 101716094 -42566395 + AluJo SINE Alu 9 292 -20 362 226 71 0 chr12 101716993 101717077 -42565412 - Charlie8 DNA MER1_type -2269 148 59 257 155 0 69 chr12 101717063 101717121 -42565368 - AluSq SINE Alu -12 290 237 * 1229 140 6 0 chr12 101717128 101717307 -42565182 - AluSq SINE Alu -133 180 1 2381 104 0 0 chr12 101717366 101717675 -42564814 - AluSx SINE Alu -3 309 1 348 145 60 48 chr12 101717695 101717778 -42564711 - MLT1J LTR MaLR -45 466 383 627 249 53 21 chr12 101717831 101718020 -42564469 + MIR SINE MIR 39 233 -29 1849 109 0 4 chr12 101718100 101718348 -42564141 + AluSx SINE Alu 60 306 -6 229 217 72 43 chr12 101719174 101719243 -42563246 - MLT1K LTR MaLR 0 588 518 2045 87 6 140 chr12 101719297 101719655 -42562834 + AluSx SINE Alu 1 310 -2 2038 152 0 0 chr12 101720400 101720702 -42561787 + AluSx SINE Alu 1 302 -10 322 277 119 19 chr12 101720799 101720958 -42561531 - MIR SINE MIR -86 176 2 230 114 0 0 chr12 101721718 101721753 -42560736 + Alu SINE Alu 16 50 -252 2597 58 0 0 chr12 101721820 101722128 -42560361 + AluY SINE Alu 1 308 -3 2082 126 10 0 chr12 101722594 101722887 -42559602 + AluSx SINE Alu 1 296 -16 282 116 0 0 chr12 101722889 101722932 -42559557 + (GGGGA)n Simple_repeat Simple_repeat 4 46 0 1279 181 0 18 chr12 101722938 101723165 -42559324 + AluJo SINE Alu 87 309 -3 308 204 56 0 chr12 101723165 101723273 -42559216 + GA-rich Low_complexity Low_complexity 1 114 0 239 199 23 181 chr12 101723335 101723506 -42558983 - MLT1K LTR MaLR 0 588 445 2156 113 3 0 chr12 101723537 101723830 -42558659 + AluSx SINE Alu 1 294 -18 2006 145 0 0 chr12 101724298 101724588 -42557901 - AluSx SINE Alu -22 290 1 538 321 58 55 chr12 101724731 101725042 -42557447 - L2 LINE L2 -177 3136 2825 573 321 42 19 chr12 101725047 101725099 -42557390 - HERVL LTR ERVL -1160 4604 4555 2145 95 39 3 chr12 101725099 101725383 -42557106 - AluSq SINE Alu -19 294 1 573 321 42 19 chr12 101725383 101725595 -42556894 - HERVL LTR ERVL -1209 4555 4334 518 326 131 18 chr12 101725759 101726487 -42556002 - HERVL LTR ERVL -1556 3929 3073 407 198 173 74 chr12 101726726 101726888 -42555601 - MER5B DNA MER1_type 0 178 1 4368 86 34 14 chr12 101727007 101727591 -42554898 - MER4A LTR ERV1 -4 596 1 435 313 170 57 chr12 101728732 101728962 -42553527 + MIR SINE MIR 2 257 -5 1848 168 0 31 chr12 101728980 101729302 -42553187 - AluJo SINE Alu 0 312 1 571 242 106 6 chr12 101729310 101729471 -42553018 - MER104 DNA MER2_type -3 177 1 886 152 0 0 chr12 101729656 101729781 -42552708 + FLAM_C SINE Alu 1 125 -8 2172 89 3 0 chr12 101731510 101731792 -42550697 - AluSx SINE Alu -9 303 21 6517 84 10 12 chr12 101731823 101732702 -42549787 + L1MA2 LINE L1 5428 6304 0 745 275 162 30 chr12 101732813 101733307 -42549182 + L1ME4a LINE L1 5282 5840 -281 1619 127 21 0 chr12 101733308 101733545 -42548944 + AluJo SINE Alu 1 242 -70 388 307 42 30 chr12 101733667 101733833 -42548656 - MIR SINE MIR -10 252 85 329 216 118 46 chr12 101733857 101733911 -42548578 + L1ME4a LINE L1 5932 5981 -140 1065 212 85 42 chr12 101733911 101734241 -42548248 + MER2 DNA MER2_type 1 344 0 329 216 118 46 chr12 101734241 101734339 -42548150 + L1ME4a LINE L1 5981 6095 -26 1433 187 97 0 chr12 101734756 101735024 -42547465 + AluJo SINE Alu 1 294 -18 1044 288 131 25 chr12 101735319 101736009 -42546480 - L2 LINE L2 -114 3199 2434 21 36 0 0 chr12 101736351 101736379 -42546110 + AT_rich Low_complexity Low_complexity 1 28 0 886 139 7 7 chr12 101736645 101736789 -42545700 + FAM SINE Alu 23 166 -19 1906 141 3 17 chr12 101737094 101737391 -42545098 + AluSq SINE Alu 5 297 -16 284 273 217 12 chr12 101737524 101737685 -42544804 + L2 LINE L2 1898 2091 -1223 620 242 17 83 chr12 101737695 101737935 -42544554 + L2 LINE L2 2256 2479 -835 200 227 0 0 chr12 101738625 101738669 -42543820 + A-rich Low_complexity Low_complexity 1 44 0 1794 143 35 0 chr12 101738689 101738811 -42543678 + AluJb SINE Alu 1 117 -195 228 35 0 0 chr12 101738811 101738840 -42543649 + (CATA)n Simple_repeat Simple_repeat 2 30 0 1794 143 35 0 chr12 101738840 101739003 -42543486 + AluJb SINE Alu 117 296 -16 312 316 26 26 chr12 101739192 101739309 -42543180 + L2 LINE L2 3155 3271 -1 2144 96 33 10 chr12 101739806 101740109 -42542380 - AluY SINE Alu -1 310 1 721 222 142 11 chr12 101740499 101740760 -42541729 + L2 LINE L2 2234 2528 -786 1193 232 172 30 chr12 101740766 101741232 -42541257 + MLT1F LTR MaLR 10 541 -1 479 216 56 56 chr12 101741241 101741403 -42541086 + L2 LINE L2 2555 2716 -598 226 222 32 32 chr12 101741662 101741725 -42540764 + L1MC4 LINE L1 6516 6578 -1464 650 178 18 1 chr12 101741746 101741871 -42540618 + L1MC4a LINE L1 6615 6724 -1084 693 105 0 0 chr12 101741883 101741969 -42540520 + AluSq SINE Alu 2 87 -226 877 99 8 8 chr12 101741969 101742100 -42540389 + AluSp/q SINE Alu 181 311 -2 673 201 22 8 chr12 101742102 101742236 -42540253 + L1MC4 LINE L1 6807 6942 -1100 23 0 0 0 chr12 101742281 101742304 -42540185 + AT_rich Low_complexity Low_complexity 1 23 0 1642 90 0 0 chr12 101742320 101742575 -42539914 + AluSc SINE Alu 82 336 0 1631 192 10 17 chr12 101742582 101742874 -42539615 + AluJo SINE Alu 1 290 -22 2392 79 0 10 chr12 101742884 101743189 -42539300 + AluY SINE Alu 1 302 -9 543 89 78 11 chr12 101743200 101743290 -42539199 + L1M LINE L1 5324 5419 -872 898 182 134 16 chr12 101743292 101743344 -42539145 + AluJo SINE Alu 82 126 -186 2181 113 0 0 chr12 101743344 101743658 -42538831 + AluSq SINE Alu 1 314 0 898 182 134 16 chr12 101743658 101743791 -42538698 + AluJo SINE Alu 126 290 -22 1991 130 46 20 chr12 101743791 101744138 -42538351 + L1MA7 LINE L1 5936 6291 0 1156 147 30 0 chr12 101744142 101744340 -42538149 + AluJb SINE Alu 87 290 -22 2203 242 93 3 chr12 101744378 101744975 -42537514 + L1MC4 LINE L1 6933 7765 -277 2975 146 41 32 chr12 101744975 101745060 -42537429 + MER34 LTR ERV1 5 88 -454 2057 138 30 0 chr12 101745060 101745358 -42537131 + AluJb SINE Alu 1 307 -5 2975 146 41 32 chr12 101745358 101745805 -42536684 + MER34 LTR ERV1 88 542 0 2203 242 93 3 chr12 101745805 101745936 -42536553 + L1MC4 LINE L1 7765 7883 -159 1043 234 110 36 chr12 101745986 101746076 -42536413 + L2 LINE L2 2702 2784 -529 2538 125 67 8 chr12 101746076 101746452 -42536037 + MER48 LTR ERV1 1 398 0 1043 234 110 36 chr12 101746452 101746891 -42535598 + L2 LINE L2 2784 3299 -14 1077 71 21 7 chr12 101747653 101747793 -42534696 + L1PA11 LINE L1 6032 6173 -1 1741 172 0 26 chr12 101747970 101748272 -42534217 - AluJo SINE Alu -18 294 1 658 157 25 107 chr12 101748482 101748543 -42533946 - MER3 DNA MER1_type -16 146 82 1704 147 52 7 chr12 101748543 101748841 -42533648 + AluJb SINE Alu 1 310 0 658 157 25 107 chr12 101748841 101748937 -42533552 - MER3 DNA MER1_type -80 82 1 346 253 65 102 chr12 101748948 101748987 -42533502 + MER102a DNA MER1_type 64 103 -1314 2042 149 3 0 chr12 101748987 101749295 -42533194 + AluSx SINE Alu 1 309 -3 346 253 65 102 chr12 101749295 101749500 -42532989 + MER102a DNA MER1_type 103 299 -31 350 281 54 10 chr12 101749817 101749952 -42532537 - MIR3 SINE MIR -2 206 56 928 269 214 29 chr12 101750047 101750501 -42531988 + MLT1G LTR MaLR 34 571 -19 791 164 39 23 chr12 101750620 101750748 -42531741 + FLAM_A SINE Alu 2 131 -2 1935 140 0 71 chr12 101750748 101750884 -42531605 + AluJb SINE Alu 1 145 -167 2429 100 0 0 chr12 101750884 101751194 -42531295 + AluSx SINE Alu 1 310 -2 2278 109 3 0 chr12 101751194 101751497 -42530992 + AluSx SINE Alu 1 304 -8 1935 140 0 71 chr12 101751497 101751695 -42530794 + AluJb SINE Alu 143 312 0 427 238 139 12 chr12 101752433 101752605 -42529884 + MIR SINE MIR 63 256 -6 213 65 0 0 chr12 101752983 101753014 -42529475 + (TC)n Simple_repeat Simple_repeat 2 32 0 1311 86 0 23 chr12 101753062 101753263 -42529226 - AluSg/x SINE Alu 0 309 113 431 299 1 21 chr12 101753272 101753440 -42529049 + L1ME4a LINE L1 5663 5825 -296 1854 152 10 3 chr12 101753469 101753766 -42528723 + AluJb SINE Alu 1 299 -13 306 0 0 0 chr12 101753868 101753902 -42528587 + (CA)n Simple_repeat Simple_repeat 2 35 0 762 139 17 9 chr12 101753902 101754017 -42528472 - FLAM_C SINE Alu -17 116 1 2248 106 6 10 chr12 101754081 101754393 -42528096 + AluSp SINE Alu 1 311 -2 386 236 71 43 chr12 101754447 101754587 -42527902 + MIR3 SINE MIR 61 204 -4 687 234 0 0 chr12 101754604 101754715 -42527774 + FLAM_A SINE Alu 2 112 -30 300 91 0 0 chr12 101754715 101754759 -42527730 + (CA)n Simple_repeat Simple_repeat 1 44 0 429 291 18 48 chr12 101754830 101754995 -42527494 + MIR SINE MIR 103 262 0 21 0 0 0 chr12 101755075 101755096 -42527393 + AT_rich Low_complexity Low_complexity 1 21 0 1261 149 107 9 chr12 101755140 101755355 -42527134 + MER46A DNA MER2_type 1 236 0 247 162 0 0 chr12 101755381 101755418 -42527071 - MIR SINE MIR -8 254 218 699 159 258 7 chr12 101755422 101755573 -42526916 + MER20 DNA MER1_type 1 189 -30 8306 149 19 6 chr12 101755573 101758006 -42524483 + L1PB2 LINE L1 3688 6151 0 284 188 0 0 chr12 101758018 101758066 -42524423 + MER20 DNA MER1_type 171 218 -1 471 295 20 13 chr12 101758107 101758256 -42524233 - MIR SINE MIR -87 175 26 480 105 0 0 chr12 101758426 101758502 -42523987 + L1PA5 LINE L1 6078 6153 -1 1686 162 13 7 chr12 101758572 101758875 -42523614 + AluJo SINE Alu 7 311 -1 1853 151 0 27 chr12 101758881 101759173 -42523316 + AluJo SINE Alu 1 284 -28 37 0 0 0 chr12 101759174 101759211 -42523278 + AT_rich Low_complexity Low_complexity 1 37 0 445 244 124 94 chr12 101759233 101759257 -42523232 - L1MC/D LINE L1 -2143 5665 5643 2064 108 3 3 chr12 101759257 101759545 -42522944 - AluSc SINE Alu -21 288 1 445 244 124 94 chr12 101759545 101759702 -42522787 - L1MC/D LINE L1 -2165 5643 5492 2341 76 13 7 chr12 101759702 101760006 -42522483 + AluSg SINE Alu 1 306 -4 445 244 124 94 chr12 101760006 101760217 -42522272 - L1MC/D LINE L1 -2316 5492 5260 212 314 116 8 chr12 101760738 101760859 -42521630 - MIR3 SINE MIR -3 205 72 1279 109 0 73 chr12 101761570 101761790 -42520699 + AluJo SINE Alu 5 208 -104 650 196 40 64 chr12 101761793 101761916 -42520573 - L1MC5 LINE L1 -801 7160 7041 1485 150 121 11 chr12 101761916 101762189 -42520300 - AluJo SINE Alu -9 303 1 650 196 40 64 chr12 101762189 101762238 -42520251 - L1MC5 LINE L1 -920 7041 6992 5060 187 99 113 chr12 101762249 101762914 -42519575 - L1MB2 LINE L1 0 6407 5735 219 36 0 0 chr12 101762914 101762942 -42519547 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 2296 81 0 0 chr12 101762943 101763226 -42519263 - AluSx SINE Alu -29 283 1 5060 187 99 113 chr12 101763226 101764605 -42517884 - L1MB2 LINE L1 -672 5735 4339 1186 178 5 33 chr12 101764605 101764818 -42517671 - AluJo SINE Alu -105 207 1 5060 187 99 113 chr12 101764818 101765199 -42517290 - L1MB2 LINE L1 -2068 4339 3954 1504 167 58 29 chr12 101765199 101765507 -42516982 + AluSx SINE Alu 1 316 0 5060 187 99 113 chr12 101765507 101765675 -42516814 - L1MB2 LINE L1 -2453 3954 3785 2358 104 0 0 chr12 101765675 101765974 -42516515 - AluSx SINE Alu -13 299 1 5060 187 99 113 chr12 101765974 101766127 -42516362 - L1MB2 LINE L1 -2622 3785 3631 1852 180 0 3 chr12 101766127 101766422 -42516067 + AluSx SINE Alu 1 294 -18 5060 187 99 113 chr12 101766422 101766442 -42516047 - L1MB2 LINE L1 -2776 3631 3612 2182 107 7 17 chr12 101766442 101766742 -42515747 + AluSq SINE Alu 1 297 -16 5060 187 99 113 chr12 101766742 101766765 -42515724 - L1MB2 LINE L1 -2795 3612 3590 1004 126 0 15 chr12 101766765 101766900 -42515589 - FLAM_C SINE Alu 0 133 1 5060 187 99 113 chr12 101766900 101767088 -42515401 - L1MB2 LINE L1 -2817 3590 3401 2213 103 6 13 chr12 101767088 101767399 -42515090 - AluSc SINE Alu 0 309 1 939 213 0 0 chr12 101767401 101767561 -42514928 - FRAM SINE Alu -4 162 3 5060 187 99 113 chr12 101767561 101767736 -42514753 - L1MB2 LINE L1 -3007 3400 3224 2305 105 0 16 chr12 101767736 101768050 -42514439 - AluSg SINE Alu -1 309 1 5060 187 99 113 chr12 101768050 101768931 -42513558 - L1MB2 LINE L1 -3183 3224 2188 815 184 0 29 chr12 101768947 101769083 -42513406 - FLAM_A SINE Alu 0 133 2 700 194 16 139 chr12 101769108 101769360 -42513129 - L1MC5 LINE L1 -1004 6957 6737 678 267 107 11 chr12 101769378 101769400 -42513089 + MIR SINE MIR 52 70 -192 2601 116 36 3 chr12 101769400 101769763 -42512726 - THE1C LTR MaLR 0 375 1 678 267 107 11 chr12 101769763 101769927 -42512562 + MIR SINE MIR 70 256 -6 460 293 161 62 chr12 101769963 101770318 -42512171 - HAL1 LINE L1 -590 1917 1528 1122 114 0 6 chr12 101770329 101770487 -42512002 + FRAM SINE Alu 1 154 -22 426 335 59 25 chr12 101770493 101770729 -42511760 - HAL1 LINE L1 -979 1528 1285 225 243 27 14 chr12 101770843 101770917 -42511572 - L1MEd LINE L1 -5048 1071 997 2325 96 3 0 chr12 101771033 101771324 -42511165 - AluSg SINE Alu -18 292 1 526 184 87 68 chr12 101771587 101771794 -42510695 - HAL1 LINE L1 -94 2413 2203 370 286 116 54 chr12 101772056 101772297 -42510192 + MLT1G1 LTR MaLR 7 262 -333 937 158 18 23 chr12 101772411 101772582 -42509907 - FRAM SINE Alu -7 169 1 1110 274 130 59 chr12 101772770 101772913 -42509576 + MLT1G1 LTR MaLR 36 167 -428 1684 146 13 50 chr12 101772913 101773215 -42509274 - AluSx SINE Alu -8 304 14 1110 274 130 59 chr12 101773215 101773593 -42508896 + MLT1G1 LTR MaLR 167 594 -1 749 243 206 8 chr12 101773772 101774151 -42508338 - L1ME3A LINE L1 -266 5904 5451 502 268 165 25 chr12 101774143 101774386 -42508103 - HAL1 LINE L1 -2126 381 105 * 476 192 34 130 chr12 101774421 101774567 -42507922 + FLAM_A SINE Alu 2 133 0 671 258 90 0 chr12 101774923 101775090 -42507399 + MER58A DNA MER1_type 4 185 -39 342 257 14 0 chr12 101775123 101775193 -42507296 - L1MEd LINE L1 -5488 631 561 291 308 62 15 chr12 101775344 101775474 -42507015 - HAL1 LINE L1 -1158 1349 1214 2057 98 11 7 chr12 101775475 101775750 -42506739 + AluSx SINE Alu 1 276 -36 632 273 92 11 chr12 101775781 101776052 -42506437 - HAL1 LINE L1 -1294 1213 921 502 317 0 14 chr12 101776069 101776214 -42506275 - HAL1 LINE L1 -1622 885 743 21 0 0 0 chr12 101776230 101776251 -42506238 + AT_rich Low_complexity Low_complexity 1 21 0 2403 77 0 10 chr12 101776395 101776693 -42505796 - AluSg SINE Alu -15 295 1 2127 129 0 0 chr12 101776859 101777154 -42505335 - AluSx SINE Alu -17 295 1 1234 199 149 11 chr12 101777157 101777418 -42505071 - AluJo SINE Alu -3 299 3 928 269 214 29 chr12 101777537 101777991 -42504498 - MLT1G LTR MaLR -19 571 34 350 281 54 10 chr12 101778086 101778221 -42504268 + MIR3 SINE MIR 56 206 -2 346 253 65 102 chr12 101778538 101778743 -42503746 - MER102a DNA MER1_type -1118 299 103 2042 149 3 0 chr12 101778743 101779051 -42503438 - AluSx SINE Alu -3 309 1 346 253 65 102 chr12 101779051 101779090 -42503399 - MER102a DNA MER1_type -1314 103 64 658 157 25 107 chr12 101779101 101779197 -42503292 + MER3 DNA MER1_type 1 82 -80 1703 147 52 7 chr12 101779197 101779495 -42502994 - AluJb SINE Alu 0 310 1 658 157 25 107 chr12 101779495 101779556 -42502933 + MER3 DNA MER1_type 82 146 -63 1741 172 0 26 chr12 101779766 101780068 -42502421 + AluJo SINE Alu 1 294 -18 1077 71 21 7 chr12 101780245 101780385 -42502104 - L1PA11 LINE L1 -1 6173 6032 1026 238 110 36 chr12 101781147 101781586 -42500903 - L2 LINE L2 -14 3299 2784 2538 125 67 8 chr12 101781586 101781962 -42500527 - MER48 LTR ERV1 0 398 1 1026 238 110 36 chr12 101781962 101782052 -42500437 - L2 LINE L2 -529 2784 2702 2203 242 93 3 chr12 101782102 101782233 -42500256 - L1MC4 LINE L1 -159 7883 7765 2975 146 41 32 chr12 101782233 101782680 -42499809 - MER34 LTR ERV1 0 542 88 2057 138 30 0 chr12 101782680 101782978 -42499511 - AluJb SINE Alu -5 307 1 2975 146 41 32 chr12 101782978 101783063 -42499426 - MER34 LTR ERV1 -454 88 5 2203 242 93 3 chr12 101783063 101783660 -42498829 - L1MC4 LINE L1 -277 7765 6933 1156 147 30 0 chr12 101783698 101783896 -42498593 - AluJb SINE Alu -22 290 87 1991 130 46 20 chr12 101783900 101784247 -42498242 - L1MA7 LINE L1 0 6291 5936 828 176 134 16 chr12 101784247 101784380 -42498109 - AluJo SINE Alu -22 290 174 279 0 0 0 chr12 101784380 101784411 -42498078 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2180 113 0 0 chr12 101784411 101784694 -42497795 - AluSq SINE Alu -30 283 1 828 176 134 16 chr12 101784694 101784746 -42497743 - AluJo SINE Alu -137 175 82 543 89 78 11 chr12 101784748 101784838 -42497651 - L1MA7 LINE L1 -872 5419 5324 2392 79 0 10 chr12 101784849 101785154 -42497335 - AluY SINE Alu -9 302 1 1631 192 10 17 chr12 101785164 101785456 -42497033 - AluJo SINE Alu -22 290 1 1641 90 0 0 chr12 101785463 101785718 -42496771 - AluSc SINE Alu 0 336 82 23 0 0 0 chr12 101785734 101785757 -42496732 + AT_rich Low_complexity Low_complexity 1 23 0 673 201 22 8 chr12 101785802 101785936 -42496553 - L1MC4 LINE L1 -1100 6942 6807 877 99 8 8 chr12 101785938 101786069 -42496420 - AluSq SINE Alu -2 311 181 693 105 0 0 chr12 101786069 101786155 -42496334 - AluSq SINE Alu -226 87 2 650 178 18 1 chr12 101786167 101786292 -42496197 - L1MC4a LINE L1 -1084 6724 6615 226 222 32 32 chr12 101786313 101786376 -42496113 - L1MC4 LINE L1 -1464 6578 6516 479 216 56 56 chr12 101786635 101786797 -42495692 - L2 LINE L2 -598 2716 2555 1193 232 172 30 chr12 101786806 101787272 -42495217 - MLT1F LTR MaLR -1 541 10 721 222 142 11 chr12 101787278 101787539 -42494950 - L2 LINE L2 -786 2528 2234 2144 96 33 10 chr12 101787929 101788232 -42494257 + AluY SINE Alu 1 310 -1 312 316 26 26 chr12 101788729 101788846 -42493643 - L2 LINE L2 -1 3271 3155 1794 143 35 0 chr12 101789035 101789198 -42493291 - AluJb SINE Alu -16 296 117 228 35 0 0 chr12 101789198 101789227 -42493262 + (TATG)n Simple_repeat Simple_repeat 2 30 0 1794 143 35 0 chr12 101789227 101789349 -42493140 - AluJb SINE Alu -195 117 1 200 227 0 0 chr12 101789369 101789413 -42493076 + T-rich Low_complexity Low_complexity 1 44 0 620 242 17 83 chr12 101790103 101790343 -42492146 - L2 LINE L2 -835 2479 2256 284 273 217 12 chr12 101790353 101790514 -42491975 - L2 LINE L2 -1223 2091 1898 1906 141 3 17 chr12 101790647 101790944 -42491545 - AluSq SINE Alu -16 297 5 886 139 7 7 chr12 101791249 101791393 -42491096 - FAM SINE Alu -19 166 23 21 36 0 0 chr12 101791659 101791687 -42490802 + AT_rich Low_complexity Low_complexity 1 28 0 1007 289 134 25 chr12 101792029 101792718 -42489771 + L2 LINE L2 2434 3199 -114 1433 187 97 0 chr12 101793013 101793281 -42489208 - AluJo SINE Alu -18 294 1 329 216 118 46 chr12 101793698 101793796 -42488693 - L1ME4a LINE L1 -26 6095 5981 1065 212 85 42 chr12 101793796 101794126 -42488363 - MER2 DNA MER2_type 0 344 1 329 216 118 46 chr12 101794126 101794180 -42488309 - L1ME4a LINE L1 -140 5981 5932 388 307 42 30 chr12 101794204 101794370 -42488119 + MIR SINE MIR 85 252 -10 1619 127 21 0 chr12 101794492 101794729 -42487760 - AluJo SINE Alu -70 242 1 745 275 162 30 chr12 101794730 101795224 -42487265 - L1ME4a LINE L1 -281 5840 5282 6517 84 10 12 chr12 101795335 101796214 -42486275 - L1MA2 LINE L1 0 6304 5428 2172 89 3 0 chr12 101796245 101796527 -42485962 + AluSx SINE Alu 21 303 -9 1603 140 57 21 chr12 101798101 101798380 -42484109 - AluJo SINE Alu -23 289 1 2196 121 0 0 chr12 101798472 101798769 -42483720 + AluSx SINE Alu 1 297 -15 1799 155 10 17 chr12 101798878 101799174 -42483315 + AluSx SINE Alu 1 294 -18 194 129 0 0 chr12 101799440 101799471 -42483018 + (A)n Simple_repeat Simple_repeat 1 31 0 2168 99 0 3 chr12 101799824 101800132 -42482357 + AluSx SINE Alu 1 307 0 2061 132 49 37 chr12 101800518 101800926 -42481563 + L1MC3 LINE L1 7373 7785 0 320 346 25 12 chr12 101801603 101801765 -42480724 + LTR67 LTR ERVL 383 546 -11 23 0 0 0 chr12 101801904 101801927 -42480562 + AT_rich Low_complexity Low_complexity 1 23 0 993 285 68 91 chr12 101802434 101803015 -42479474 - L2 LINE L2 -5 3308 2715 845 171 8 0 chr12 101803015 101803144 -42479345 + FLAM_A SINE Alu 3 132 -1 993 285 68 91 chr12 101803144 101803202 -42479287 - L2 LINE L2 -598 2715 2657 2193 107 13 0 chr12 101803202 101803501 -42478988 + AluSx SINE Alu 1 303 -9 2127 122 0 3 chr12 101803507 101803802 -42478687 + AluSg SINE Alu 5 298 -12 993 285 68 91 chr12 101803802 101803940 -42478549 - L2 LINE L2 -661 2652 2522 200 86 29 0 chr12 101803940 101803975 -42478514 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 993 285 68 91 chr12 101803975 101804118 -42478371 - L2 LINE L2 -791 2522 2377 1067 158 119 66 chr12 101804582 101804644 -42477845 - Charlie1 DNA MER1_type -11 2750 2693 1514 64 5 5 chr12 101804644 101804832 -42477657 - AluSq SINE Alu -21 292 105 1067 158 119 66 chr12 101804832 101804933 -42477556 - Charlie1 DNA MER1_type -68 2693 2599 1772 90 38 26 chr12 101804933 101805123 -42477366 - L1MA2 LINE L1 0 6304 6109 2227 108 0 0 chr12 101805123 101805420 -42477069 + AluSg SINE Alu 1 297 -13 1772 90 38 26 chr12 101805420 101805496 -42476993 - L1MA2 LINE L1 -195 6109 6035 1067 158 119 66 chr12 101805496 101805666 -42476823 - Charlie1 DNA MER1_type -162 2599 2398 829 196 0 7 chr12 101805674 101805817 -42476672 + AluJo SINE Alu 2 143 -169 192 152 0 0 chr12 101805871 101805904 -42476585 + (TA)n Simple_repeat Simple_repeat 1 33 0 1351 200 139 10 chr12 101805904 101806214 -42476275 - Charlie1 DNA MER1_type -368 2393 2044 643 237 189 0 chr12 101806185 101806354 -42476135 - Charlie1 DNA MER1_type -2555 206 6 * 200 91 0 30 chr12 101806526 101806559 -42475930 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 281 161 0 18 chr12 101806898 101806954 -42475535 + L1MC5 LINE L1 7729 7783 -178 1714 166 34 20 chr12 101807023 101807318 -42475171 - AluJb SINE Alu -9 303 5 2372 77 10 3 chr12 101807335 101807632 -42474857 - AluY SINE Alu -12 299 1 983 157 52 79 chr12 101807647 101807876 -42474613 - MLT1B LTR MaLR -167 223 1 2129 133 3 0 chr12 101807967 101808268 -42474221 + AluSq SINE Alu 1 302 -11 1168 149 0 0 chr12 101808268 101808443 -42474046 + AluSg/x SINE Alu 132 306 -4 1496 218 28 25 chr12 101808767 101809093 -42473396 + MER7A DNA MER2_type 2 326 -20 324 94 0 0 chr12 101809214 101809267 -42473222 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 2341 122 0 0 chr12 101809574 101809886 -42472603 - AluSx SINE Alu 0 312 1 468 254 0 18 chr12 101809894 101810008 -42472481 + L1ME LINE L1 5520 5631 -490 253 196 0 20 chr12 101810017 101810068 -42472421 - L2 LINE L2 -1 3312 3263 196 200 89 0 chr12 101810157 101810202 -42472287 - L2 LINE L2 -4 3309 3261 2247 99 0 3 chr12 101810372 101810674 -42471815 + AluSq SINE Alu 1 301 -12 293 220 42 85 chr12 101811068 101811186 -42471303 - L2 LINE L2 -26 3246 3134 376 297 81 75 chr12 101811221 101811581 -42470908 - MLT1K LTR MaLR -124 464 103 312 322 27 34 chr12 101811762 101811908 -42470581 + MIR SINE MIR 4 148 -114 2172 110 20 0 chr12 101811940 101812232 -42470257 - AluSx SINE Alu -14 298 1 746 184 54 89 chr12 101812234 101812385 -42470104 - L1MEd LINE L1 -2361 4021 3866 1756 190 0 3 chr12 101812385 101812680 -42469809 + AluSx SINE Alu 1 294 -18 746 184 54 89 chr12 101812680 101812700 -42469789 - L1MEd LINE L1 -2516 3866 3847 2182 107 7 17 chr12 101812700 101813000 -42469489 + AluSq SINE Alu 1 297 -16 746 184 54 89 chr12 101813000 101813023 -42469466 - L1MEd LINE L1 -2535 3847 3825 1004 126 0 15 chr12 101813023 101813158 -42469331 - FLAM_C SINE Alu 0 133 1 746 184 54 89 chr12 101813158 101813345 -42469144 - L1MEd LINE L1 -2557 3825 3675 2239 100 6 13 chr12 101813346 101813657 -42468832 - AluSc SINE Alu 0 309 1 939 213 0 0 chr12 101813659 101813819 -42468670 - FRAM SINE Alu -4 162 3 2407 211 32 67 chr12 101813929 101813989 -42468500 - L1MEd LINE L1 -3267 3115 3054 2304 105 0 16 chr12 101813989 101814304 -42468185 - AluSg SINE Alu 0 310 1 2407 211 32 67 chr12 101814304 101815184 -42467305 - L1MEd LINE L1 -3328 3054 2188 830 176 0 29 chr12 101815204 101815340 -42467149 - FLAM_A SINE Alu 0 133 2 682 198 16 139 chr12 101815365 101815617 -42466872 - L1MC5 LINE L1 -1004 6957 6737 678 267 107 11 chr12 101815635 101815657 -42466832 + MIR SINE MIR 52 70 -192 2601 116 36 3 chr12 101815657 101816020 -42466469 - THE1C LTR MaLR 0 375 1 678 267 107 11 chr12 101816020 101816184 -42466305 + MIR SINE MIR 70 256 -6 448 293 161 62 chr12 101816220 101816575 -42465914 - HAL1 LINE L1 -590 1917 1528 1122 114 0 6 chr12 101816586 101816744 -42465745 + FRAM SINE Alu 1 154 -22 426 335 59 25 chr12 101816750 101816986 -42465503 - HAL1 LINE L1 -979 1528 1285 225 243 27 14 chr12 101817100 101817174 -42465315 - L1MEd LINE L1 -5048 1324 1250 2328 96 3 0 chr12 101817290 101817581 -42464908 - AluSg SINE Alu -18 292 1 546 179 87 68 chr12 101817844 101818051 -42464438 - HAL1 LINE L1 -94 2413 2203 370 286 116 54 chr12 101818313 101818554 -42463935 + MLT1G1 LTR MaLR 7 262 -333 920 160 18 24 chr12 101818668 101818837 -42463652 - FRAM SINE Alu -9 167 1 1110 274 130 59 chr12 101819025 101819168 -42463321 + MLT1G1 LTR MaLR 36 167 -428 1726 149 14 27 chr12 101819168 101819463 -42463026 - AluSx SINE Alu -8 304 14 1110 274 130 59 chr12 101819463 101819841 -42462648 + MLT1G1 LTR MaLR 167 594 -1 749 243 206 8 chr12 101820020 101820399 -42462090 - L1ME3A LINE L1 -266 5904 5451 502 268 165 25 chr12 101820391 101820634 -42461855 - HAL1 LINE L1 -2126 381 105 * 476 192 34 130 chr12 101820669 101820815 -42461674 + FLAM_A SINE Alu 2 133 0 260 206 79 0 chr12 101821091 101821154 -42461335 - L1MEd LINE L1 -5394 978 911 703 261 85 0 chr12 101821170 101821346 -42461143 + MER58A DNA MER1_type 2 192 -32 342 257 14 0 chr12 101821372 101821442 -42461047 - L1MEd LINE L1 -5488 884 814 1243 288 101 93 chr12 101821593 101821724 -42460765 - HAL1 LINE L1 -1158 1349 1221 2068 98 11 7 chr12 101821724 101821999 -42460490 + AluSx SINE Alu 1 276 -36 1243 288 101 93 chr12 101821999 101822644 -42459845 - HAL1 LINE L1 -1286 1221 583 2410 74 0 10 chr12 101822644 101822941 -42459548 - AluSg SINE Alu -16 294 1 1243 288 101 93 chr12 101822941 101823109 -42459380 - HAL1 LINE L1 -1924 583 418 1893 174 0 3 chr12 101823109 101823419 -42459070 - AluJo SINE Alu -3 309 1 1243 288 101 93 chr12 101823419 101823810 -42458679 - HAL1 LINE L1 -2089 418 1 969 145 0 0 chr12 101825006 101825137 -42457352 - FLAM_C SINE Alu -1 132 2 31 58 0 0 chr12 101825336 101825388 -42457101 + AT_rich Low_complexity Low_complexity 1 52 0 180 286 82 0 chr12 101825798 101825847 -42456642 - L2 LINE L2 -5 3267 3215 239 302 70 39 chr12 101826413 101826542 -42455947 - L2 LINE L2 -930 2384 2252 794 160 0 15 chr12 101826648 101826779 -42455710 + FLAM_A SINE Alu 1 129 -4 2139 109 0 10 chr12 101828538 101828840 -42453649 - AluSx SINE Alu -8 304 6 2114 101 45 0 chr12 101830280 101830566 -42451923 - AluSp SINE Alu -14 299 1 2418 77 10 0 chr12 101830970 101831268 -42451221 + AluSx SINE Alu 1 301 -11 924 142 0 22 chr12 101831459 101831593 -42450896 + FLAM_C SINE Alu 1 131 -2 255 61 0 0 chr12 101831622 101831655 -42450834 + (CA)n Simple_repeat Simple_repeat 2 34 0 202 78 16 219 chr12 101833380 101833444 -42449045 - L2 LINE L2 -2 3311 3261 * 257 252 50 101 chr12 101833426 101833585 -42448904 - MIR SINE MIR -29 233 83 2100 87 49 3 chr12 101833805 101834093 -42448396 - AluSx SINE Alu -9 303 3 2452 69 3 22 chr12 101835119 101835436 -42447053 - AluY SINE Alu 0 311 1 1963 123 63 0 chr12 101835436 101835721 -42446768 - AluSg SINE Alu -7 303 1 1824 208 218 20 chr12 101835813 101836308 -42446181 + MLT1E LTR MaLR 1 593 0 27 62 0 0 chr12 101836338 101836386 -42446103 + AT_rich Low_complexity Low_complexity 1 48 0 444 272 80 96 chr12 101836531 101836837 -42445652 + MARNA DNA Mariner 48 346 -240 914 150 0 7 chr12 101836837 101836984 -42445505 + L1PB3 LINE L1 6009 6154 0 444 272 80 96 chr12 101836984 101837115 -42445374 + MARNA DNA Mariner 346 478 -108 1540 180 18 0 chr12 101837115 101837398 -42445091 + L1MB7 LINE L1 5586 5873 -311 293 329 66 36 chr12 101838718 101838885 -42443604 - L2 LINE L2 -219 3053 2882 326 321 157 20 chr12 101838933 101839182 -42443307 - L2 LINE L2 -574 2740 2458 1911 117 35 18 chr12 101839407 101839690 -42442799 + AluSx SINE Alu 1 288 -24 248 245 0 0 chr12 101840649 101840702 -42441787 + MIR SINE MIR 185 237 -25 246 369 27 0 chr12 101840792 101840903 -42441586 - MIR SINE MIR -39 223 110 2113 128 0 7 chr12 101841530 101841835 -42440654 + AluSx SINE Alu 1 303 -9 2250 110 0 10 chr12 101841859 101841992 -42440497 + AluSc SINE Alu 1 134 -175 2342 90 17 3 chr12 101841992 101842293 -42440196 + AluSp SINE Alu 2 306 -7 2250 110 0 10 chr12 101842293 101842460 -42440029 + AluSc SINE Alu 134 298 -11 2238 122 3 0 chr12 101842471 101842783 -42439706 + AluSq SINE Alu 1 313 0 203 156 0 0 chr12 101843325 101843357 -42439132 + T-rich Low_complexity Low_complexity 3 34 0 28 0 0 0 chr12 101844105 101844133 -42438356 + AT_rich Low_complexity Low_complexity 1 28 0 201 277 0 0 chr12 101844150 101844197 -42438292 + GA-rich Low_complexity Low_complexity 4 50 0 2266 108 0 0 chr12 101844325 101844621 -42437868 + AluSx SINE Alu 1 296 -16 227 329 83 8 chr12 101845265 101845410 -42437079 - MIR SINE MIR -45 163 6 2331 101 3 0 chr12 101845947 101846253 -42436236 + AluSx SINE Alu 1 307 -5 1039 50 0 0 chr12 101847647 101847768 -42434721 - L1PA5 LINE L1 0 6154 6034 1467 166 64 0 chr12 101847892 101848157 -42434332 + AluJb SINE Alu 1 282 -30 200 176 59 15 chr12 101848163 101848231 -42434258 + (TA)n Simple_repeat Simple_repeat 1 71 0 257 176 0 20 chr12 101848256 101848307 -42434182 + L2 LINE L2 3221 3270 -43 431 205 36 0 chr12 101848352 101848435 -42434054 + FLAM SINE Alu 40 125 -18 1119 205 79 4 chr12 101848826 101849080 -42433409 + AluJo SINE Alu 2 274 -38 1752 137 25 103 chr12 101849202 101849561 -42432928 - MER7A DNA MER2_type -17 329 1 2249 94 0 10 chr12 101849791 101850089 -42432400 - AluSx SINE Alu -17 295 1 559 312 157 64 chr12 101850469 101851346 -42431143 + L2 LINE L2 2173 3188 -84 2220 113 0 23 chr12 101851346 101851655 -42430834 - AluSx SINE Alu -10 302 1 559 312 157 64 chr12 101851655 101851749 -42430740 + L2 LINE L2 3188 3272 0 402 274 204 18 chr12 101852051 101852277 -42430212 + L2 LINE L2 2476 2743 -571 1947 135 0 26 chr12 101902426 101902729 -42379760 - AluSx SINE Alu -17 295 1 251 28 28 0 chr12 101903263 101903299 -42379190 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 829 185 22 22 chr12 101903323 101903501 -42378988 - L1MB3 LINE L1 -39 6144 5967 186 43 0 0 chr12 101903501 101903524 -42378965 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 961 161 5 62 chr12 101903538 101903731 -42378758 - AluJb SINE Alu -40 272 91 553 220 17 151 chr12 101903963 101904195 -42378294 - MIR SINE MIR -10 252 52 2056 129 0 31 chr12 101904859 101905351 -42377138 - AluSg SINE Alu 0 482 1 5149 59 71 31 chr12 101905474 101906305 -42376184 - SVA Other Other -518 868 5 1831 143 13 51 chr12 101906409 101906723 -42375766 - AluSx SINE Alu -10 302 1 605 286 63 68 chr12 101906950 101907202 -42375287 + MIR SINE MIR 2 252 -10 640 132 26 0 chr12 101907558 101907672 -42374817 - MER41B LTR ERV1 -518 117 1 6364 85 25 9 chr12 101907672 101908618 -42373871 - MER41B-int LTR ERV1 -2 5944 4984 2009 99 17 0 chr12 101908618 101908912 -42373577 + Tigger1 DNA MER2_type 986 1284 -1134 2371 106 3 0 chr12 101908948 101909260 -42373229 + AluSp SINE Alu 1 313 0 1406 79 42 0 chr12 101909268 101909482 -42373007 + Tigger1 DNA MER2_type 1735 1957 -461 253 191 0 48 chr12 101909482 101909545 -42372944 - AluS SINE Alu -10 292 233 402 255 7 52 chr12 101909701 101909854 -42372635 + GA-rich Low_complexity Low_complexity 3 148 0 502 251 17 69 chr12 101910023 101910198 -42372291 + MIR SINE MIR 96 261 -1 1899 162 16 7 chr12 101911378 101911686 -42370803 - AluJb SINE Alu -1 311 1 21 36 0 0 chr12 101911810 101911838 -42370651 + AT_rich Low_complexity Low_complexity 1 28 0 222 91 0 0 chr12 101912002 101912035 -42370454 + (GA)n Simple_repeat Simple_repeat 2 34 0 962 226 28 45 chr12 101912428 101912716 -42369773 - MLT1D LTR MaLR -6 499 217 1797 130 68 14 chr12 101912716 101913008 -42369481 - AluJo SINE Alu -4 308 1 1602 131 15 19 chr12 101913034 101913293 -42369196 - AluJo SINE Alu -13 299 42 21 0 0 0 chr12 101913562 101913583 -42368906 + AT_rich Low_complexity Low_complexity 1 21 0 330 208 0 0 chr12 101913583 101913655 -42368834 - L1MC5 LINE L1 -189 7772 7701 2014 194 39 46 chr12 101913655 101914113 -42368376 + MSTB2 LTR MaLR 1 455 -2 1633 154 61 7 chr12 101914148 101914427 -42368062 + AluJo SINE Alu 1 294 -18 339 256 62 34 chr12 101914432 101914608 -42367881 - L1MC5 LINE L1 -271 7690 7510 645 205 0 31 chr12 101914625 101914752 -42367737 - AluSg/x SINE Alu -15 295 173 2258 107 7 3 chr12 101914985 101915285 -42367204 + AluSx SINE Alu 1 301 -11 290 253 126 0 chr12 101915519 101915606 -42366883 + L2 LINE L2 3171 3268 -4 713 180 0 0 chr12 101915746 101915868 -42366621 + AluJo SINE Alu 15 136 -176 555 118 0 0 chr12 101916611 101916696 -42365793 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 514 63 25 0 chr12 101916678 101916757 -42365732 + (TC)n Simple_repeat Simple_repeat 1 81 0 * 2069 123 0 0 chr12 101916757 101917033 -42365456 - AluSx SINE Alu -36 276 1 280 81 0 0 chr12 101917322 101917359 -42365130 - L2 LINE L2 -14 3299 3263 412 268 50 11 chr12 101917665 101917844 -42364645 - L1MC4a LINE L1 -1879 5929 5744 299 328 215 4 chr12 101917900 101918156 -42364333 - L2 LINE L2 -790 2524 2215 860 216 134 22 chr12 101918315 101918547 -42363942 - MIR SINE MIR 0 262 5 655 151 59 0 chr12 101919324 101919443 -42363046 - MER20 DNA MER1_type 0 219 94 2173 107 13 16 chr12 101919477 101919785 -42362704 - AluSx SINE Alu -5 307 1 1296 184 8 13 chr12 101919821 101920055 -42362434 - AluJo SINE Alu -78 234 2 298 128 0 0 chr12 101920058 101920105 -42362384 - MER20 DNA MER1_type -133 86 40 945 124 0 0 chr12 101920664 101920793 -42361696 + FLAM_C SINE Alu 3 131 -2 835 157 95 0 chr12 101920863 101921010 -42361479 - FAM SINE Alu -1 48 1 2298 102 3 0 chr12 101921040 101921345 -42361144 + AluSq SINE Alu 1 306 -7 505 137 32 11 chr12 101921543 101921638 -42360851 + AluJb SINE Alu 7 103 -209 2316 75 0 7 chr12 101923726 101924018 -42358471 - AluY SINE Alu -21 290 1 192 338 20 88 chr12 101924181 101924329 -42358160 + MER5A DNA MER1_type 52 189 0 23 0 0 0 chr12 101924394 101924417 -42358072 + AT_rich Low_complexity Low_complexity 1 23 0 186 103 0 0 chr12 101926801 101926830 -42355659 + (A)n Simple_repeat Simple_repeat 1 29 0 1032 178 27 5 chr12 101927060 101927245 -42355244 + MER5A DNA MER1_type 1 189 0 23 33 0 0 chr12 101927507 101927537 -42354952 + AT_rich Low_complexity Low_complexity 1 30 0 273 268 31 87 chr12 101928290 101928417 -42354072 + L2 LINE L2 3192 3311 -2 216 0 0 0 chr12 101928485 101928509 -42353980 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 246 114 0 0 chr12 101928808 101928873 -42353616 - Alu SINE Alu 0 316 252 1355 119 10 5 chr12 101928973 101929166 -42353323 + AluSg/x SINE Alu 87 280 -30 369 0 0 0 chr12 101929170 101929211 -42353278 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 970 138 0 0 chr12 101929335 101929473 -42353016 - FLAM_C SINE Alu -5 138 1 201 195 0 0 chr12 101931470 101931511 -42350978 + (CA)n Simple_repeat Simple_repeat 2 42 0 1934 147 10 3 chr12 101931763 101932056 -42350433 + AluJb SINE Alu 1 295 -17 1816 161 0 28 chr12 101933180 101933497 -42348992 + AluJo SINE Alu 3 310 -2 2782 79 0 13 chr12 101933796 101934175 -42348314 + THE1C LTR MaLR 2 375 0 1875 174 0 3 chr12 101934744 101935037 -42347452 + AluJb SINE Alu 1 292 -20 27 0 0 0 chr12 101935037 101935064 -42347425 + AT_rich Low_complexity Low_complexity 1 27 0 1229 121 12 0 chr12 101938282 101938448 -42344041 - AluSx SINE Alu -144 168 1 2286 116 0 0 chr12 101939316 101939626 -42342863 - AluSx SINE Alu 0 312 3 651 325 62 43 chr12 101940603 101940826 -42341663 + LTR67 LTR ERVL 10 227 -330 2250 82 0 3 chr12 101940826 101941120 -42341369 + AluSg SINE Alu 1 293 -17 651 325 62 43 chr12 101941120 101941426 -42341063 + LTR67 LTR ERVL 227 549 -8 358 158 131 16 chr12 101941557 101941678 -42340811 - L1ME3 LINE L1 -1 6163 6023 1814 146 18 11 chr12 101942099 101942379 -42340110 + AluJb SINE Alu 1 282 -30 246 295 33 0 chr12 101942554 101942615 -42339874 + L2 LINE L2 3205 3267 -5 336 195 300 50 chr12 101943043 101943136 -42339353 + MIR SINE MIR 1 70 -192 2289 110 7 3 chr12 101943136 101943436 -42339053 + AluSg SINE Alu 1 301 -9 2280 117 0 0 chr12 101943437 101943735 -42338754 + AluSg SINE Alu 1 298 -12 336 195 300 50 chr12 101943735 101943839 -42338650 + MIR SINE MIR 69 250 -12 314 176 147 69 chr12 101943997 101944099 -42338390 + MER63 DNA MER1_type 650 759 -302 1826 161 0 37 chr12 101944184 101944506 -42337983 + AluSx SINE Alu 1 310 -2 790 194 26 0 chr12 101944639 101944794 -42337695 + MER58A DNA MER1_type 28 186 -38 312 208 47 4 chr12 101944841 101944964 -42337525 - MER5A DNA MER1_type -6 183 14 209 182 0 0 chr12 101945015 101945048 -42337441 + (CA)n Simple_repeat Simple_repeat 2 34 0 1495 146 138 4 chr12 101945048 101945301 -42337188 - AluJb SINE Alu -15 287 1 238 135 39 0 chr12 101945416 101945468 -42337021 + L1MC4 LINE L1 6648 6701 -1341 556 210 0 0 chr12 101945485 101945585 -42336904 - U6 snRNA snRNA -1 106 7 233 143 24 0 chr12 101945587 101945629 -42336860 + L1MC4a LINE L1 6683 6725 -1083 1111 248 95 8 chr12 101945644 101946003 -42336486 - L1ME1 LINE L1 -168 5998 5609 235 214 29 14 chr12 101946013 101946083 -42336406 + L1MC4 LINE L1 7231 7301 -741 1211 195 93 43 chr12 101946101 101946521 -42335968 + L1MC4 LINE L1 7613 7995 0 839 439 123 4 chr12 101946846 101947115 -42335374 - AluY SINE Alu 0 301 1 393 39 0 0 chr12 101947118 101947169 -42335320 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 963 134 6 30 chr12 101947169 101947319 -42335170 - AluJo/FRAM SINE Alu -26 286 137 1522 164 68 11 chr12 101948674 101948937 -42333552 + AluJb SINE Alu 27 304 -8 671 137 23 8 chr12 101948944 101949075 -42333414 + L1MB3 LINE L1 6044 6176 -7 2382 99 3 6 chr12 101949959 101950271 -42332218 + AluSx SINE Alu 1 311 -1 2310 91 3 0 chr12 101950885 101951193 -42331296 - AluY SINE Alu -2 309 1 252 0 0 0 chr12 101951196 101951224 -42331265 + (T)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chr12 101951524 101951555 -42330934 + AT_rich Low_complexity Low_complexity 1 31 0 2465 70 0 10 chr12 101951838 101952137 -42330352 + AluSg SINE Alu 1 296 -14 1809 166 0 17 chr12 101952388 101952690 -42329799 + AluJo SINE Alu 5 301 -11 2414 91 3 0 chr12 101952692 101953000 -42329489 + AluSp SINE Alu 1 309 -4 2906 124 25 8 chr12 101955274 101955757 -42326732 - L1MB2 LINE L1 -2 6169 5679 205 256 105 68 chr12 101956878 101957011 -42325478 - MIR SINE MIR -123 139 2 696 206 0 29 chr12 101957086 101957222 -42325267 - FLAM_A SINE Alu -1 132 1 221 333 125 0 chr12 101957238 101957334 -42325155 + MIR SINE MIR 34 141 -67 1680 96 8 64 chr12 101957569 101957820 -42324669 + AluSx SINE Alu 43 279 -33 2022 142 3 0 chr12 101958490 101958778 -42323711 + AluJb SINE Alu 1 289 -23 186 43 0 0 chr12 101959120 101959143 -42323346 + (CA)n Simple_repeat Simple_repeat 1 23 0 1721 171 3 33 chr12 101959166 101959471 -42323018 + AluJb SINE Alu 1 296 -16 1317 263 234 28 chr12 101959489 101960263 -42322226 - L2 LINE L2 -41 3272 2659 2242 98 0 3 chr12 101960263 101960550 -42321939 + AluSx SINE Alu 1 286 -26 1317 263 234 28 chr12 101960550 101960782 -42321707 - L2 LINE L2 -654 2659 1943 419 243 36 18 chr12 101960907 101961018 -42321471 - MIR SINE MIR -105 157 45 1857 164 7 7 chr12 101961184 101961494 -42320995 - AluJb SINE Alu -2 310 1 257 103 0 0 chr12 101961508 101961547 -42320942 + MADE1 DNA Mariner 1 39 -41 2070 72 30 4 chr12 101961547 101961810 -42320679 - AluY SINE Alu -7 304 35 326 68 0 0 chr12 101961889 101961933 -42320556 - AluY SINE Alu -258 44 1 339 83 0 0 chr12 101961934 101961982 -42320507 + MADE1 DNA Mariner 32 79 -1 214 339 16 48 chr12 101962674 101962798 -42319691 + L2 LINE L2 315 434 -2880 22 0 0 0 chr12 101963840 101963862 -42318627 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr12 101964692 101964716 -42317773 + (TA)n Simple_repeat Simple_repeat 2 25 0 1868 140 65 0 chr12 101964827 101965105 -42317384 + AluSx SINE Alu 1 296 -16 198 0 0 0 chr12 101965153 101965175 -42317314 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1174 185 21 0 chr12 101965175 101965364 -42317125 - AluJo SINE Alu -27 285 93 341 315 56 37 chr12 101965430 101965592 -42316897 + L1MEd LINE L1 628 792 -5327 642 213 35 40 chr12 101965852 101966054 -42316435 - L2 LINE L2 -1 3312 3112 329 176 0 12 chr12 101966101 101966186 -42316303 + (TG)n Simple_repeat Simple_repeat 2 85 0 1187 289 105 16 chr12 101966192 101966738 -42315751 - L2 LINE L2 -196 3117 2417 1491 170 50 18 chr12 101966771 101967048 -42315441 + AluJo SINE Alu 1 286 -26 1332 140 4 26 chr12 101967324 101967553 -42314936 + MER46A DNA MER2_type 3 226 -10 2339 83 0 3 chr12 101967568 101967868 -42314621 - AluSp SINE Alu -14 299 1 354 262 243 33 chr12 101968452 101968662 -42313827 - MIR SINE MIR -6 256 3 449 304 155 0 chr12 101968838 101969019 -42313470 - MIR SINE MIR -20 242 34 361 329 76 9 chr12 101969187 101969530 -42312959 - L1ME4a LINE L1 -188 5933 5568 360 264 111 115 chr12 101969546 101969807 -42312682 - L2 LINE L2 -676 2638 2379 2150 127 3 13 chr12 101970085 101970400 -42312089 + AluJb SINE Alu 1 312 0 360 290 190 43 chr12 101970430 101970784 -42311705 - L1ME LINE L1 -425 5739 5328 661 110 0 10 chr12 101970784 101970884 -42311605 - HY3 scRNA scRNA -2 99 1 360 290 190 43 chr12 101970884 101970898 -42311591 - L1ME LINE L1 -836 5328 5317 1736 118 86 25 chr12 101971063 101971342 -42311147 - AluSq SINE Alu -17 296 1 1868 138 10 10 chr12 101972172 101972469 -42310020 - AluSx SINE Alu -15 297 1 403 313 26 75 chr12 101972752 101973017 -42309472 - L1ME LINE L1 -2300 3846 3595 241 346 0 0 chr12 101973228 101973329 -42309160 + (TA)n Simple_repeat Simple_repeat 2 102 0 231 247 52 65 chr12 101973350 101973504 -42308985 - L1MC/D LINE L1 -1877 5931 5780 388 329 56 25 chr12 101973512 101973617 -42308872 - L1ME LINE L1 -2644 3502 3402 1460 167 94 11 chr12 101973617 101973893 -42308596 + AluJb SINE Alu 1 299 -13 388 329 56 25 chr12 101973893 101974073 -42308416 - L1ME LINE L1 -2744 3402 3208 1208 293 79 14 chr12 101974126 101974456 -42308033 + L2 LINE L2 2806 3174 -139 1514 166 61 24 chr12 101974456 101974752 -42307737 - AluJo SINE Alu -5 307 1 1208 293 79 14 chr12 101974752 101974865 -42307624 + L2 LINE L2 3174 3278 -35 499 297 42 0 chr12 101974914 101975032 -42307457 + L2 LINE L2 3144 3266 -6 534 328 114 47 chr12 101975042 101975359 -42307130 + L2 LINE L2 2905 3242 -30 343 238 137 8 chr12 101975474 101975649 -42306840 + MIR SINE MIR 19 210 -52 900 296 4 0 chr12 101975860 101976086 -42306403 - MIR SINE MIR -18 244 18 186 43 0 0 chr12 101977046 101977069 -42305420 + (TA)n Simple_repeat Simple_repeat 2 24 0 2433 53 0 10 chr12 101978401 101978700 -42303789 - AluY SINE Alu -15 296 1 1825 149 4 11 chr12 101978898 101979174 -42303315 - AluJb SINE Alu -38 274 1 21 0 0 0 chr12 101979496 101979517 -42302972 + AT_rich Low_complexity Low_complexity 1 21 0 218 261 0 0 chr12 101979644 101979690 -42302799 + L2 LINE L2 3210 3255 -17 23 0 0 0 chr12 101981312 101981335 -42301154 + AT_rich Low_complexity Low_complexity 1 23 0 1872 151 43 0 chr12 101981753 101982052 -42300437 + AluJb SINE Alu 1 312 0 1927 167 13 0 chr12 101982176 101982476 -42300013 + AluJb SINE Alu 1 304 -8 1748 199 0 3 chr12 101983242 101983544 -42298945 - AluJo SINE Alu -10 302 2 467 358 35 56 chr12 101984575 101984860 -42297629 - L2 LINE L2 -26 3246 2968 321 301 0 11 chr12 101984999 101985092 -42297397 - MIR SINE MIR -77 185 94 2336 105 3 0 chr12 101985201 101985507 -42296982 + AluSx SINE Alu 1 307 -5 2105 148 0 0 chr12 101986508 101986813 -42295676 + AluSx SINE Alu 3 307 -5 704 210 68 0 chr12 101987352 101987514 -42294975 + MIR SINE MIR 90 262 0 182 189 0 75 chr12 101988103 101988156 -42294333 + MIR SINE MIR 164 212 -50 399 312 2 0 chr12 101988863 101988964 -42293525 + MIR SINE MIR 4 105 -103 506 301 13 19 chr12 101989956 101990112 -42292377 - MER5A DNA MER1_type -3 186 32 204 200 0 0 chr12 101990363 101990398 -42292091 - MIR SINE MIR -11 251 217 2269 88 7 0 chr12 101990594 101990890 -42291599 + AluSp SINE Alu 1 298 -15 2308 80 0 3 chr12 101991213 101991512 -42290977 + AluSg SINE Alu 1 298 -12 2254 118 13 0 chr12 101992300 101992606 -42289883 + AluSx SINE Alu 1 310 -2 1334 201 58 43 chr12 101992666 101992967 -42289522 + AluJb SINE Alu 1 305 0 784 171 0 0 chr12 101993002 101993125 -42289364 - FLAM_C SINE Alu -10 123 1 180 0 0 0 chr12 101993295 101993315 -42289174 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 447 286 60 0 chr12 101993823 101993956 -42288533 + MIR SINE MIR 5 145 -117 2482 70 0 0 chr12 101993960 101994260 -42288229 - AluSq SINE Alu -13 300 1 779 249 104 0 chr12 101995602 101995633 -42286856 + MIR SINE MIR 2 28 -234 2208 117 0 0 chr12 101995633 101995933 -42286556 + AluSq SINE Alu 2 301 -12 779 249 104 0 chr12 101995933 101996122 -42286367 + MIR SINE MIR 28 245 -17 2280 111 3 13 chr12 101996340 101996655 -42285834 + AluSx SINE Alu 1 312 0 1372 31 0 0 chr12 101996716 101996877 -42285612 + L1PA3 LINE L1 5995 6155 0 219 114 0 0 chr12 101997011 101997046 -42285443 + (TTA)n Simple_repeat Simple_repeat 2 36 0 24 53 0 0 chr12 101997397 101997435 -42285054 + AT_rich Low_complexity Low_complexity 1 38 0 1361 202 70 37 chr12 101997736 101998063 -42284426 - MER58B DNA MER1_type -3 338 1 835 147 0 0 chr12 101998103 101998232 -42284257 - FLAM_A SINE Alu -1 132 4 1818 193 64 15 chr12 101999252 101999785 -42282704 - Charlie1 DNA MER1_type 0 2761 2203 293 167 0 0 chr12 101999776 101999830 -42282659 - Charlie1 DNA MER1_type -2620 141 88 * 5896 45 36 23 chr12 102000501 102001320 -42281169 + SVA Other Other 576 1404 0 2169 87 0 23 chr12 102001378 102001688 -42280801 + AluSp SINE Alu 1 303 -10 585 235 99 9 chr12 102001783 102002004 -42280485 + L1MC/D LINE L1 5319 5559 -2249 248 227 15 15 chr12 102002165 102002231 -42280258 + (TA)n Simple_repeat Simple_repeat 1 66 0 2165 119 7 7 chr12 102002271 102002581 -42279908 + AluSx SINE Alu 1 310 -2 1929 160 0 16 chr12 102002869 102003182 -42279307 + AluJb SINE Alu 5 312 0 25 0 0 0 chr12 102005371 102005396 -42277093 + AT_rich Low_complexity Low_complexity 1 25 0 723 128 23 15 chr12 102005431 102005564 -42276925 + FRAM SINE Alu 42 175 -1 2036 118 3 48 chr12 102005847 102006162 -42276327 - AluSx SINE Alu -11 301 1 224 330 175 10 chr12 102006486 102006583 -42275906 - MIR SINE MIR -79 129 17 1658 213 7 0 chr12 102006947 102007248 -42275241 - AluJb SINE Alu -9 303 1 31 68 0 0 chr12 102007441 102007500 -42274989 + AT_rich Low_complexity Low_complexity 1 59 0 1430 184 74 15 chr12 102008212 102008329 -42274160 + AluJb SINE Alu 1 110 -202 2462 77 0 16 chr12 102008329 102008642 -42273847 + AluSq SINE Alu 1 308 -5 1430 184 74 15 chr12 102008642 102008795 -42273694 + AluJb SINE Alu 110 287 -25 1405 178 4 41 chr12 102009850 102010120 -42272369 - AluJo SINE Alu -9 303 44 288 0 0 0 chr12 102010176 102010208 -42272281 + (T)n Simple_repeat Simple_repeat 1 32 0 1937 75 0 12 chr12 102010380 102010666 -42271823 - AluY SINE Alu 0 314 32 1825 113 34 40 chr12 102010849 102011175 -42271314 + MER1B DNA MER1_type 1 324 -15 988 154 19 6 chr12 102011489 102011651 -42270838 + FRAM SINE Alu 1 161 -15 610 269 16 36 chr12 102011651 102011844 -42270645 - LTR33 LTR ERVL -257 264 76 320 208 158 62 chr12 102011969 102012210 -42270279 + L1ME3A LINE L1 2953 3216 -2930 2231 102 0 30 chr12 102012219 102012524 -42269965 + AluSq SINE Alu 1 296 -17 767 261 42 42 chr12 102012687 102012948 -42269541 - MIR SINE MIR 0 262 2 1693 247 60 44 chr12 102013164 102013847 -42268642 + L1ME3A LINE L1 4518 5211 -935 1149 160 19 0 chr12 102013879 102014085 -42268404 + MER2 DNA MER2_type 1 210 -135 1418 190 52 21 chr12 102014120 102014409 -42268080 - AluJo SINE Alu -14 298 1 1558 133 122 12 chr12 102014415 102014670 -42267819 - AluSg SINE Alu -9 301 19 2407 231 70 22 chr12 102014718 102015487 -42267002 + L1ME3A LINE L1 5230 6047 -123 2118 144 0 3 chr12 102015487 102015792 -42266697 - AluJb SINE Alu -4 308 5 2407 231 70 22 chr12 102015792 102015914 -42266575 + L1ME3A LINE L1 6047 6162 -8 519 264 180 9 chr12 102016025 102016337 -42266152 + L1ME4a LINE L1 5308 5682 -439 377 220 102 43 chr12 102016549 102016735 -42265754 + L1ME4a LINE L1 5925 6121 0 198 0 0 0 chr12 102018817 102018839 -42263650 + (T)n Simple_repeat Simple_repeat 1 22 0 2306 108 7 0 chr12 102020348 102020654 -42261835 + AluSx SINE Alu 1 308 -4 321 227 67 0 chr12 102021309 102021384 -42261105 - L2 LINE L2 -42 3271 3192 185 256 186 12 chr12 102021498 102021584 -42260905 - MIR3 SINE MIR -34 174 74 618 152 38 8 chr12 102021946 102022078 -42260411 - L1MB2 LINE L1 0 6171 6036 846 159 0 0 chr12 102022079 102022211 -42260278 - FLAM_C SINE Alu 0 133 2 315 327 20 10 chr12 102023227 102023328 -42259161 - MER5B DNA MER1_type -31 147 46 2434 100 0 0 chr12 102023672 102023982 -42258507 + AluSg SINE Alu 1 310 0 242 287 16 8 chr12 102024130 102024252 -42258237 + T-rich Low_complexity Low_complexity 3 125 0 407 73 176 0 chr12 102024617 102024685 -42257804 + MADE1 DNA Mariner 1 80 0 1967 112 40 4 chr12 102024853 102025131 -42257358 + AluSc SINE Alu 1 288 -21 2157 91 0 4 chr12 102025351 102025626 -42256863 + AluSc SINE Alu 12 285 -24 342 0 0 0 chr12 102025636 102025674 -42256815 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2171 111 3 0 chr12 102026353 102026641 -42255848 - AluSx SINE Alu -14 298 10 368 192 0 0 chr12 102026775 102026853 -42255636 - L1PB4 LINE L1 -7 6149 6072 1003 117 7 0 chr12 102026856 102027010 -42255479 + MER2 DNA MER2_type 41 195 -150 352 233 14 0 chr12 102027051 102027124 -42255365 + MER2 DNA MER2_type 269 342 -3 339 25 0 0 chr12 102027217 102027257 -42255232 + (TG)n Simple_repeat Simple_repeat 2 41 0 2238 108 0 0 chr12 102027969 102028264 -42254225 - AluSx SINE Alu -17 295 1 1986 229 45 4 chr12 102028610 102029122 -42253367 + MER82 DNA MER2_type 120 652 -1 1761 160 27 3 chr12 102029361 102029661 -42252828 - AluJb SINE Alu -5 307 1 319 302 208 20 chr12 102029768 102029970 -42252519 + MIR SINE MIR 5 244 -18 1461 183 20 6 chr12 102031625 102031952 -42250537 - L1MB7 LINE L1 -15 6174 5850 1954 135 4 0 chr12 102031982 102032263 -42250226 + AluSx SINE Alu 2 283 -29 189 0 0 0 chr12 102032263 102032284 -42250205 + (TA)n Simple_repeat Simple_repeat 1 21 0 499 111 11 11 chr12 102032514 102032604 -42249885 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 351 264 16 31 chr12 102032791 102032920 -42249569 - L2 LINE L2 -995 2319 2193 2129 130 0 7 chr12 102033792 102034091 -42248398 - AluSx SINE Alu -15 297 1 548 301 40 17 chr12 102034192 102034368 -42248121 - MIR3 SINE MIR -13 195 16 2386 140 175 13 chr12 102034383 102034752 -42247737 - L1MB3 LINE L1 -2 6181 5873 273 75 0 0 chr12 102034752 102034792 -42247697 + (CA)n Simple_repeat Simple_repeat 2 41 0 2386 140 175 13 chr12 102034792 102034971 -42247518 - L1MB3 LINE L1 -310 5873 5544 709 164 49 8 chr12 102034990 102035112 -42247377 - FLAM_C SINE Alu -16 127 1 387 0 0 0 chr12 102035121 102035164 -42247325 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 216 376 38 3 chr12 102035208 102035327 -42247162 + MIR SINE MIR 57 132 -76 2275 100 13 0 chr12 102035516 102035816 -42246673 - AluSx SINE Alu -8 304 1 573 140 32 0 chr12 102036443 102036536 -42245953 - FRAM SINE Alu -16 160 65 2191 112 3 3 chr12 102036614 102036917 -42245572 - AluSx SINE Alu -9 303 1 3345 29 2 7 chr12 102037309 102037719 -42244770 - L1PA3 LINE L1 -5 6150 5743 2203 132 0 0 chr12 102037864 102038167 -42244322 + AluSx SINE Alu 1 303 -9 1814 149 3 10 chr12 102039270 102039559 -42242930 + AluJo SINE Alu 1 287 -25 3137 169 33 42 chr12 102039559 102040024 -42242465 + L1MB8 LINE L1 5049 5499 -679 2310 113 0 3 chr12 102040024 102040334 -42242155 - AluSg SINE Alu -1 309 1 3137 169 33 42 chr12 102040334 102040781 -42241708 + L1MB8 LINE L1 5499 5949 -229 1059 173 95 20 chr12 102040793 102040919 -42241570 - Ricksha DNA DNA -7 2847 2732 2292 118 0 0 chr12 102040919 102041223 -42241266 + AluSq SINE Alu 1 304 -9 1059 173 95 20 chr12 102041223 102041452 -42241037 - Ricksha DNA DNA -122 2732 2509 361 302 108 22 chr12 102041777 102041916 -42240573 - L3 LINE CR1 -58 1519 1369 1179 175 4 57 chr12 102041925 102041960 -42240529 + AluJo SINE Alu 84 119 -193 2411 76 13 0 chr12 102041960 102042264 -42240225 + AluY SINE Alu 1 308 -3 1179 175 4 57 chr12 102042264 102042457 -42240032 + AluJo SINE Alu 119 300 -12 289 197 0 42 chr12 102042467 102042538 -42239951 + L1ME LINE L1 5744 5811 -310 2839 118 19 11 chr12 102042700 102043166 -42239323 - Tigger1 DNA MER2_type 0 2418 1949 1524 138 0 106 chr12 102043167 102043442 -42239047 + AluSx SINE Alu 1 246 -66 2458 86 7 0 chr12 102043442 102043745 -42238744 + AluSp SINE Alu 1 306 -7 244 194 0 48 chr12 102043745 102043807 -42238682 + AluSx SINE Alu 232 290 -10 297 153 17 0 chr12 102043807 102043866 -42238623 - Tigger1 DNA MER2_type -461 1957 1898 306 0 0 0 chr12 102044693 102044727 -42237762 + (CA)n Simple_repeat Simple_repeat 1 34 0 2072 113 0 3 chr12 102044872 102045155 -42237334 + AluSx SINE Alu 27 308 -4 491 125 11 0 chr12 102045169 102045257 -42237232 + L1MB4 LINE L1 6091 6179 -1 512 117 0 0 chr12 102045582 102045659 -42236830 - AluSp/q SINE Alu -9 304 228 552 151 0 119 chr12 102046502 102046589 -42235900 + AluJo/FLAM SINE Alu 1 70 -242 2164 111 3 3 chr12 102046589 102046886 -42235603 + AluSx SINE Alu 1 297 -15 552 151 0 119 chr12 102046886 102046924 -42235565 + AluJo/FLAM SINE Alu 70 111 -201 375 278 0 0 chr12 102046943 102047033 -42235456 - L1MC4 LINE L1 -1339 6703 6614 * 387 267 0 0 chr12 102046957 102047047 -42235442 + L1MC4 LINE L1 6614 6703 -1339 312 176 27 40 chr12 102047026 102047100 -42235389 + L1MCa LINE L1 1996 2068 -4358 * 301 310 23 0 chr12 102047068 102047155 -42235334 + L1MC4 LINE L1 6895 6983 -1339 * 2311 106 0 3 chr12 102047937 102048239 -42234250 - AluSg SINE Alu -9 301 1 1583 194 17 0 chr12 102048456 102048750 -42233739 - AluJb SINE Alu -13 299 1 2333 215 74 19 chr12 102048866 102048917 -42233572 - L1ME1 LINE L1 -12 6152 6105 978 187 0 0 chr12 102048917 102049083 -42233406 + FRAM SINE Alu 1 166 0 2333 215 74 19 chr12 102049083 102050008 -42232481 - L1ME1 LINE L1 -59 6105 5114 1860 145 14 0 chr12 102050187 102050483 -42232006 - AluJo SINE Alu -11 301 2 1491 79 19 5 chr12 102050671 102050887 -42231602 + L1PB1 LINE L1 5931 6149 -2 2022 147 0 3 chr12 102050919 102051212 -42231277 + AluSx SINE Alu 1 292 -20 309 261 26 9 chr12 102051299 102051414 -42231075 - L1MEd LINE L1 -5983 136 20 1031 161 12 37 chr12 102051447 102051689 -42230800 - L1MB8 LINE L1 0 6178 5943 1401 166 60 4 chr12 102051698 102051963 -42230526 + Ricksha DNA DNA 10 289 -2957 * 5623 132 23 56 chr12 102051961 102052043 -42230446 + Ricksha DNA DNA 1821 1904 -1342 1869 164 20 3 chr12 102052043 102052347 -42230142 + AluJb SINE Alu 1 309 -3 5623 132 23 56 chr12 102052347 102052939 -42229550 + Ricksha DNA DNA 1904 2447 -799 2060 123 0 3 chr12 102052939 102053232 -42229257 - AluSx SINE Alu -20 292 1 5623 132 23 56 chr12 102053232 102053665 -42228824 + Ricksha DNA DNA 2447 2893 -353 2822 82 32 0 chr12 102053765 102054165 -42228324 + MER41A LTR ERV1 54 466 -88 5542 144 20 20 chr12 102054181 102054998 -42227491 - Tigger1 DNA MER2_type -1418 1000 181 1530 181 38 11 chr12 102054998 102055285 -42227204 + AluJo SINE Alu 1 295 -17 5542 144 20 20 chr12 102055285 102055464 -42227025 - Tigger1 DNA MER2_type -2236 182 4 2148 97 10 7 chr12 102055685 102055983 -42226506 + AluSx SINE Alu 1 299 -13 2395 92 0 0 chr12 102056234 102056528 -42225961 + AluSq SINE Alu 5 298 -15 711 180 33 0 chr12 102056970 102057092 -42225397 - FLAM_C SINE Alu -7 126 1 263 0 0 0 chr12 102057123 102057151 -42225338 + U6 snRNA snRNA 1 28 -79 1557 173 35 28 chr12 102057255 102057544 -42224945 + AluJo SINE Alu 1 291 -21 1471 149 0 14 chr12 102057866 102058087 -42224402 - AluSx SINE Alu -94 218 1 302 45 23 0 chr12 102059111 102059155 -42223334 + (TG)n Simple_repeat Simple_repeat 2 46 0 686 251 54 25 chr12 102059523 102059762 -42222727 + MIR SINE MIR 15 260 -2 195 231 0 19 chr12 102059846 102059898 -42222591 - MIR3 SINE MIR -5 203 153 879 191 47 91 chr12 102059926 102059991 -42222498 + L1ME2 LINE L1 5854 5920 -258 1998 103 26 4 chr12 102059991 102060262 -42222227 - AluSg SINE Alu -15 295 19 879 191 47 91 chr12 102060262 102060517 -42221972 + L1ME2 LINE L1 5920 6167 -11 382 248 103 8 chr12 102060517 102060634 -42221855 - MER5B DNA MER1_type -50 128 1 185 329 37 24 chr12 102060659 102060741 -42221748 - MIR SINE MIR -97 111 29 1773 145 8 0 chr12 102060896 102061151 -42221338 - AluJo SINE Alu -55 257 1 280 257 43 0 chr12 102061152 102061222 -42221267 + MLT1G1 LTR MaLR 235 307 -288 328 289 0 44 chr12 102061260 102061395 -42221094 + L2 LINE L2 3139 3267 -5 698 307 44 4 chr12 102061410 102061638 -42220851 - MIR SINE MIR -6 256 20 194 286 0 0 chr12 102061713 102061755 -42220734 + L2 LINE L2 3180 3221 -92 2873 10 0 0 chr12 102061824 102062133 -42220356 - AluYa5 SINE Alu -2 309 1 561 330 62 47 chr12 102062592 102062692 -42219797 + L2 LINE L2 1859 1956 -1358 1833 164 3 3 chr12 102062692 102062984 -42219505 - AluJb SINE Alu -20 292 1 561 330 62 47 chr12 102062984 102063395 -42219094 + L2 LINE L2 1956 2378 -936 812 257 86 22 chr12 102063401 102063765 -42218724 + MLT1G1 LTR MaLR 1 423 -172 239 0 32 0 chr12 102063834 102063865 -42218624 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 906 142 0 0 chr12 102063870 102063997 -42218492 - FLAM_C SINE Alu -16 127 1 197 345 149 21 chr12 102064040 102064368 -42218121 + L2 LINE L2 2380 2749 -565 2389 92 7 0 chr12 102064370 102064676 -42217813 + AluSx SINE Alu 2 309 -3 198 118 0 0 chr12 102064949 102064983 -42217506 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 301 321 45 0 chr12 102064984 102065096 -42217393 - L2 LINE L2 -14 3258 3142 1870 113 33 23 chr12 102065636 102065937 -42216552 + LTR49-int LTR ERV1 6028 6331 0 1621 109 16 24 chr12 102065937 102066185 -42216304 + LTR49 LTR ERV1 1 246 -349 2231 117 0 3 chr12 102066326 102066626 -42215863 + AluSg SINE Alu 1 299 -11 2571 56 10 3 chr12 102066626 102066931 -42215558 + AluY SINE Alu 1 307 -4 463 290 40 23 chr12 102067105 102067208 -42215281 + MER117 DNA MER1_type 17 126 -71 1860 128 26 54 chr12 102067208 102067521 -42214968 + AluSx SINE Alu 1 304 -8 463 290 40 23 chr12 102067521 102067593 -42214896 + MER117 DNA MER1_type 126 195 -2 870 238 30 48 chr12 102067637 102067906 -42214583 + L1ME3 LINE L1 5899 6162 0 342 237 53 18 chr12 102068538 102068652 -42213837 - MIR SINE MIR -100 162 45 2016 117 27 13 chr12 102068813 102069111 -42213378 - AluSq SINE Alu -11 302 1 742 186 14 14 chr12 102069358 102069498 -42212991 - FLAM_C SINE Alu -2 141 2 2169 96 20 13 chr12 102069549 102069851 -42212638 - AluSg SINE Alu -6 304 1 2118 101 0 4 chr12 102069851 102070129 -42212360 - AluSx SINE Alu -6 306 30 1454 225 41 25 chr12 102070159 102070523 -42211966 + MLT1A2 LTR MaLR 1 370 -4 1147 285 72 59 chr12 102071199 102071621 -42210868 - LTR67 LTR ERVL -10 547 115 2112 123 17 7 chr12 102071621 102071922 -42210567 + AluSx SINE Alu 1 304 -8 1147 285 72 59 chr12 102071922 102072039 -42210450 - LTR67 LTR ERVL -442 115 1 313 202 144 29 chr12 102072050 102072154 -42210335 - L1ME LINE L1 -394 5768 5653 799 258 91 48 chr12 102072212 102072386 -42210103 - L1ME LINE L1 -896 5250 5085 2010 93 41 24 chr12 102072386 102072676 -42209813 + AluSg SINE Alu 1 295 -15 799 258 91 48 chr12 102072676 102073020 -42209469 - L1ME LINE L1 -1061 5085 4710 198 103 0 0 chr12 102073099 102073128 -42209361 + (A)n Simple_repeat Simple_repeat 1 29 0 2050 128 3 0 chr12 102074243 102074525 -42207964 - AluSx SINE Alu -24 288 6 1724 142 10 64 chr12 102074548 102074844 -42207645 - AluSg SINE Alu -30 280 1 275 209 139 52 chr12 102075051 102075166 -42207323 - MLT1K LTR MaLR 0 588 464 321 265 52 100 chr12 102075226 102075546 -42206943 - MLT1L LTR MaLR -230 358 32 2031 162 0 0 chr12 102075607 102075904 -42206585 + AluJo SINE Alu 1 297 -15 376 287 28 7 chr12 102076994 102077137 -42205352 - MIR SINE MIR 0 262 117 620 108 23 46 chr12 102077386 102077516 -42204973 + MER4-int LTR ERV1 3924 4050 -2548 193 172 82 90 chr12 102077528 102077650 -42204839 - L2 LINE L2 -109 3204 3084 3055 171 27 54 chr12 102077676 102077951 -42204538 + L1MB7 LINE L1 5567 5848 -336 1774 143 11 4 chr12 102077951 102078224 -42204265 - AluJo SINE Alu -22 290 16 3055 171 27 54 chr12 102078224 102078573 -42203916 + L1MB7 LINE L1 5848 6174 -10 383 341 8 0 chr12 102078591 102078717 -42203772 - L2 LINE L2 -261 3052 2926 2087 148 3 0 chr12 102078728 102079039 -42203450 + AluSx SINE Alu 1 312 0 562 236 85 64 chr12 102079841 102080093 -42202396 + MLT1H LTR MaLR 3 298 -251 1400 167 63 67 chr12 102080170 102080470 -42202019 - AluJb SINE Alu -13 299 1 195 283 152 0 chr12 102080605 102080697 -42201792 + MIR SINE MIR 89 194 -68 743 130 0 24 chr12 102081873 102081996 -42200493 + FLAM_C SINE Alu 23 142 -1 1576 195 48 40 chr12 102081996 102082375 -42200114 + MLT1C LTR MaLR 86 467 0 1672 175 0 20 chr12 102082712 102083009 -42199480 - AluJb SINE Alu -14 298 8 426 162 0 15 chr12 102083100 102083168 -42199321 + MLT1D LTR MaLR 1 67 -438 1920 153 7 13 chr12 102083296 102083467 -42199022 - AluJb SINE Alu -7 305 135 2234 94 0 49 chr12 102083467 102083795 -42198694 - AluSx SINE Alu 0 312 1 1920 153 7 13 chr12 102083795 102083930 -42198559 - AluJb SINE Alu -177 135 1 220 250 0 0 chr12 102085380 102085424 -42197065 + polypyrimidine Low_complexity Low_complexity 3 46 0 2073 51 120 11 chr12 102085424 102085698 -42196791 - AluY SINE Alu -7 304 1 1802 166 21 7 chr12 102085699 102085989 -42196500 - AluJo SINE Alu -18 294 1 983 171 163 0 chr12 102085989 102086234 -42196255 - MER33 DNA MER1_type -39 285 1 4100 116 42 124 chr12 102086419 102087939 -42194550 + pTR5 LTR ERV1 742 2606 0 764 258 62 5 chr12 102087985 102088194 -42194295 + MER102a DNA MER1_type 73 293 -37 1312 144 46 19 chr12 102088474 102088737 -42193752 + L1MA4A LINE L1 5853 6122 -181 829 191 0 0 chr12 102088741 102088882 -42193607 + FLAM_C SINE Alu 1 141 -2 469 165 52 26 chr12 102088898 102089013 -42193476 + L1MA4A LINE L1 6182 6299 -4 2255 132 3 0 chr12 102089072 102089383 -42193106 - AluSx SINE Alu 0 312 1 216 342 40 0 chr12 102089695 102089771 -42192718 - L3 LINE CR1 -71 1506 1428 731 173 0 53 chr12 102090138 102090288 -42192201 + FLAM_C SINE Alu 2 143 0 188 266 158 38 chr12 102090343 102090527 -42191962 - L2 LINE L2 -642 2672 2467 3989 64 10 8 chr12 102091103 102091602 -42190887 + LTR3b LTR ERVK 1 500 0 1396 158 158 4 chr12 102091648 102092061 -42190428 - AluJo SINE Alu 0 453 1 758 214 24 0 chr12 102092064 102092232 -42190257 + MIR SINE MIR 90 261 -1 306 224 64 40 chr12 102092191 102092316 -42190173 - MIR SINE MIR -35 227 100 * 2002 124 4 0 chr12 102093625 102093929 -42188560 - AluSq SINE Alu 0 316 12 2077 182 9 23 chr12 102093953 102094386 -42188103 - L1MB8 LINE L1 0 6178 5752 2314 105 0 0 chr12 102094598 102094893 -42187596 - AluSx SINE Alu -17 295 1 1930 181 91 25 chr12 102095403 102095834 -42186655 + LTR2B LTR ERV1 32 490 0 489 126 53 32 chr12 102096016 102096111 -42186378 + MER4A LTR ERV1 1 97 -567 2024 105 3 27 chr12 102096111 102096464 -42186025 + MER4A LTR ERV1 262 664 0 3033 100 96 60 chr12 102096467 102097125 -42185364 + MER4A-int LTR ERV1 1 834 -5764 279 0 0 0 chr12 102097158 102097189 -42185300 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1266 226 38 41 chr12 102097198 102097512 -42184977 + MER4A-int LTR ERV1 1855 2167 -4164 4345 115 23 23 chr12 102097569 102097721 -42184768 + MER4B-int LTR ERV1 198 349 -6409 1784 64 18 0 chr12 102097721 102097941 -42184548 - AluSc SINE Alu -2 307 84 4345 115 23 23 chr12 102097941 102098685 -42183804 + MER4B-int LTR ERV1 349 1149 -5609 207 100 0 0 chr12 102098685 102098715 -42183774 + (TG)n Simple_repeat Simple_repeat 1 30 0 4002 106 72 12 chr12 102098740 102099430 -42183059 + MER4B-int LTR ERV1 1764 2495 -4103 1187 167 132 0 chr12 102099430 102099657 -42182832 - LTR8 LTR ERV1 -434 257 1 1868 80 34 22 chr12 102099657 102099981 -42182508 + MER4-int LTR ERV1 2737 3064 -3534 288 0 0 0 chr12 102099981 102100013 -42182476 + (T)n Simple_repeat Simple_repeat 1 32 0 38 22 0 0 chr12 102100013 102100058 -42182431 + GC_rich Low_complexity Low_complexity 1 45 0 1425 129 5 0 chr12 102100448 102100649 -42181840 + AluSg/x SINE Alu 98 299 -13 2218 108 0 0 chr12 102100659 102100947 -42181542 + AluSg SINE Alu 8 295 -15 196 313 46 53 chr12 102100950 102101081 -42181408 - MIR3 SINE MIR -65 143 14 750 178 0 0 chr12 102101562 102101680 -42180809 + FLAM_C SINE Alu 1 118 -15 214 295 16 0 chr12 102102342 102102403 -42180086 - L2 LINE L2 -247 3066 3005 2287 91 31 0 chr12 102102442 102102728 -42179761 - AluSx SINE Alu -16 296 2 261 324 27 45 chr12 102102779 102102890 -42179599 + MIR SINE MIR 42 150 -58 1763 152 0 4 chr12 102103087 102103350 -42179139 - AluSx SINE Alu -2 310 49 2415 104 0 0 chr12 102103359 102103668 -42178821 - AluSx SINE Alu -3 309 1 988 320 55 16 chr12 102103720 102104266 -42178223 - L2 LINE L2 -590 2724 2158 256 273 30 0 chr12 102104269 102104335 -42178154 + MER3 DNA MER1_type 45 112 -97 1299 35 0 0 chr12 102104338 102104481 -42178008 + AluYb8 SINE Alu 1 143 -175 608 228 7 0 chr12 102104589 102104738 -42177751 - L1MA10 LINE L1 -1 6333 6184 255 170 0 0 chr12 102104825 102104872 -42177617 + (TA)n Simple_repeat Simple_repeat 1 47 0 26 0 0 0 chr12 102105002 102105028 -42177461 + AT_rich Low_complexity Low_complexity 1 26 0 305 133 33 47 chr12 102105880 102106091 -42176398 + AluJb SINE Alu 1 300 -2 309 223 18 69 chr12 102106193 102106330 -42176159 + MER110 LTR ERV1 375 484 0 980 281 83 10 chr12 102106347 102106731 -42175758 + L2 LINE L2 2898 3309 -4 2240 119 7 0 chr12 102106779 102107089 -42175400 - AluSx SINE Alu 0 312 1 199 261 0 0 chr12 102107177 102107223 -42175266 + L2 LINE L2 3263 3308 -5 396 82 0 0 chr12 102107853 102107914 -42174575 + (TATG)n Simple_repeat Simple_repeat 2 62 0 222 42 62 21 chr12 102107914 102107962 -42174527 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1611 185 3 14 chr12 102107962 102108254 -42174235 - AluJo SINE Alu -21 291 3 361 106 0 0 chr12 102108957 102109030 -42173459 - Alu SINE Alu 0 310 238 230 298 53 21 chr12 102109787 102109881 -42172608 - L2 LINE L2 -15 3257 3161 449 333 51 30 chr12 102109891 102109922 -42172567 + MIR SINE MIR 23 52 -210 1981 129 3 44 chr12 102109922 102110239 -42172250 + AluSx SINE Alu 1 304 -8 449 333 51 30 chr12 102110239 102110441 -42172048 + MIR SINE MIR 52 261 -1 747 183 0 42 chr12 102110906 102111048 -42171441 + AluJo SINE Alu 1 136 -176 2119 117 0 0 chr12 102111236 102111544 -42170945 + AluSx SINE Alu 1 308 0 2907 13 0 0 chr12 102112005 102112317 -42170172 + AluYb8 SINE Alu 1 312 -6 2417 98 0 0 chr12 102114367 102114673 -42167816 + AluSx SINE Alu 1 306 -6 226 286 43 0 chr12 102114804 102114874 -42167615 - MIR SINE MIR -108 154 82 366 213 0 75 chr12 102114926 102115020 -42167469 - L1MC1 LINE L1 -1 6332 6246 312 156 0 0 chr12 102115056 102115101 -42167388 - Alu SINE Alu -263 45 1 799 174 0 0 chr12 102115250 102115382 -42167107 + FLAM_C SINE Alu 2 133 0 385 288 50 7 chr12 102115397 102115536 -42166953 + L1ME4a LINE L1 5514 5658 -463 507 237 79 5 chr12 102115575 102115790 -42166699 + L1ME4a LINE L1 5738 5968 -153 249 241 69 35 chr12 102115756 102115843 -42166646 - L1MC4 LINE L1 -1340 6702 6613 * 298 245 39 10 chr12 102115825 102115927 -42166562 + L1ME4a LINE L1 5947 6051 -70 1886 177 3 0 chr12 102116067 102116378 -42166111 + AluJo SINE Alu 1 312 0 410 326 56 10 chr12 102116386 102116582 -42165907 + MIR SINE MIR 26 230 -32 931 114 8 0 chr12 102117480 102117611 -42164878 + FLAM_C SINE Alu 1 132 -1 1994 128 21 0 chr12 102117810 102118098 -42164391 + AluSx SINE Alu 1 294 -18 299 240 128 67 chr12 102118597 102118776 -42163713 - MIR SINE MIR -71 191 2 2090 120 13 0 chr12 102118885 102119184 -42163305 + AluSx SINE Alu 1 303 -9 1754 38 5 14 chr12 102119701 102119914 -42162575 - AluSp SINE Alu -18 295 85 1826 71 4 0 chr12 102120009 102120235 -42162254 - AluY SINE Alu -2 309 83 207 0 0 0 chr12 102120374 102120397 -42162092 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1218 167 108 66 chr12 102120420 102120708 -42161781 - AluJo SINE Alu -9 303 4 3601 158 15 62 chr12 102120716 102120941 -42161548 - L1MB7 LINE L1 -48 6136 5602 2446 93 3 0 chr12 102120941 102121251 -42161238 + AluSx SINE Alu 2 312 0 822 292 41 65 chr12 102121252 102121360 -42161129 - L1PB2 LINE L1 -229 5922 5813 1712 187 3 3 chr12 102121360 102121654 -42160835 - AluJo SINE Alu -18 294 1 822 292 41 65 chr12 102121654 102121809 -42160680 - L1PB2 LINE L1 -338 5813 5656 2251 103 3 3 chr12 102121809 102122109 -42160380 + AluSp SINE Alu 1 300 -13 822 292 41 65 chr12 102122109 102122402 -42160087 - L1PB2 LINE L1 -495 5656 5378 2085 156 0 0 chr12 102122434 102122742 -42159747 - AluJo SINE Alu -4 308 1 646 292 62 0 chr12 102122913 102123122 -42159367 - MIR SINE MIR -28 234 13 341 318 36 9 chr12 102123240 102123350 -42159139 + MIR SINE MIR 18 130 -78 323 151 0 25 chr12 102123353 102123421 -42159068 + AluJo SINE Alu 85 135 -167 1487 181 23 29 chr12 102123421 102123730 -42158759 + AluSx SINE Alu 1 307 -5 2090 110 3 13 chr12 102124173 102124474 -42158015 + AluSx SINE Alu 1 298 -14 1998 131 10 28 chr12 102124552 102124843 -42157646 + AluJo SINE Alu 3 288 -24 2148 96 0 7 chr12 102124881 102125163 -42157326 + AluSc SINE Alu 20 299 -10 1642 108 0 0 chr12 102125824 102126037 -42156452 - AluSq SINE Alu -15 298 86 4064 159 7 24 chr12 102126076 102126653 -42155836 - L1MB3 LINE L1 -7 6176 5613 2218 102 7 23 chr12 102126653 102126957 -42155532 - AluSx SINE Alu -13 299 1 4064 159 7 24 chr12 102126957 102127127 -42155362 - L1MB3 LINE L1 -570 5613 5442 1897 251 164 44 chr12 102127154 102127477 -42155012 + L2 LINE L2 1826 2109 -1204 2210 126 0 3 chr12 102127477 102127779 -42154710 - AluSx SINE Alu -11 301 1 1897 251 164 44 chr12 102127779 102128307 -42154182 + L2 LINE L2 2109 2572 -741 2188 112 0 14 chr12 102128307 102128603 -42153886 + AluSx SINE Alu 21 312 0 1897 251 164 44 chr12 102128603 102128999 -42153490 + L2 LINE L2 2572 3258 -55 2149 126 7 0 chr12 102129255 102129557 -42152932 + AluSx SINE Alu 2 305 -7 2602 133 38 17 chr12 102129573 102129993 -42152496 - MSTB1 LTR MaLR -2 430 2 2196 113 0 0 chr12 102130067 102130378 -42152111 - AluSx SINE Alu 0 311 1 782 197 0 0 chr12 102130842 102130974 -42151515 + FLAM_A SINE Alu 1 132 -1 1137 160 6 6 chr12 102131093 102131274 -42151215 - AluJo SINE Alu -21 291 111 1794 115 66 28 chr12 102131322 102131610 -42150879 - AluSx SINE Alu -13 299 1 1724 144 49 46 chr12 102131839 102132144 -42150345 - AluJo SINE Alu -6 306 1 221 282 51 0 chr12 102132147 102132225 -42150264 + MIR SINE MIR 116 197 -65 21 0 0 0 chr12 102132231 102132252 -42150237 + AT_rich Low_complexity Low_complexity 1 21 0 441 253 102 110 chr12 102132421 102132803 -42149686 - L2 LINE L2 0 3313 2929 966 96 0 30 chr12 102132803 102132938 -42149551 + FLAM_C SINE Alu 3 133 0 1136 97 11 0 chr12 102132940 102133116 -42149373 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 441 253 102 110 chr12 102133116 102133152 -42149337 - L2 LINE L2 -385 2928 2893 185 0 40 0 chr12 102133152 102133177 -42149312 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 441 253 102 110 chr12 102133177 102133253 -42149236 - L2 LINE L2 -420 2893 2819 2561 62 0 0 chr12 102133300 102133609 -42148880 + AluY SINE Alu 1 309 -2 2087 136 0 10 chr12 102133888 102134210 -42148279 + AluSx SINE Alu 1 312 0 2067 141 0 0 chr12 102134247 102134552 -42147937 + AluSx SINE Alu 1 305 -7 611 162 120 17 chr12 102134572 102134689 -42147800 - FLAM_C SINE Alu 0 133 5 1131 156 73 5 chr12 102134757 102134962 -42147527 - MER20 DNA MER1_type 0 219 1 2459 64 3 6 chr12 102135066 102135377 -42147112 + AluY SINE Alu 1 310 -1 8998 111 22 5 chr12 102135407 102136664 -42145825 + HSMAR1 DNA Mariner 9 1287 0 644 303 70 41 chr12 102136753 102137004 -42145485 - L2 LINE L2 -16 3297 3028 2299 105 0 3 chr12 102137004 102137299 -42145190 + AluSx SINE Alu 1 294 -18 644 303 70 41 chr12 102137299 102137459 -42145030 - L2 LINE L2 -285 3028 2874 1946 129 4 11 chr12 102138068 102138347 -42144142 + AluJb SINE Alu 14 290 -22 684 176 9 0 chr12 102138348 102138456 -42144033 - AluJo/FLAM SINE Alu -201 111 3 1099 188 19 14 chr12 102138618 102138831 -42143658 - MER20 DNA MER1_type -5 214 1 871 191 28 0 chr12 102138926 102139104 -42143385 + MER5A DNA MER1_type 1 183 -6 2089 135 16 3 chr12 102139371 102139674 -42142815 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr12 102139692 102139722 -42142767 + AT_rich Low_complexity Low_complexity 1 30 0 710 58 0 0 chr12 102139852 102139939 -42142550 - U6 snRNA snRNA -6 101 15 667 192 0 0 chr12 102139941 102140061 -42142428 - FLAM_C SINE Alu -22 121 2 1761 167 7 10 chr12 102140152 102140446 -42142043 + AluJb SINE Alu 1 293 -19 1756 122 10 68 chr12 102141006 102141317 -42141172 + AluJb SINE Alu 13 305 -7 1441 154 18 46 chr12 102141338 102141391 -42141098 + L1M4 LINE L1 5318 5371 -807 2141 124 3 16 chr12 102141391 102141698 -42140791 + AluSq SINE Alu 1 303 -10 1441 154 18 46 chr12 102141698 102141929 -42140560 + L1M4 LINE L1 5371 5594 -584 855 230 53 5 chr12 102141932 102142141 -42140348 + MLT1A1 LTR MaLR 1 219 -146 3159 162 49 30 chr12 102142273 102142364 -42140125 + L1MB7 LINE L1 5511 5599 -585 1726 182 33 36 chr12 102142364 102142588 -42139901 + MLT1A1 LTR MaLR 4 228 -137 2074 105 61 0 chr12 102142588 102142865 -42139624 - AluSg SINE Alu -16 294 1 1726 182 33 36 chr12 102142865 102143003 -42139486 + MLT1A1 LTR MaLR 228 365 0 3159 162 49 30 chr12 102143003 102143188 -42139301 + L1MB7 LINE L1 5599 5779 -405 1805 171 0 10 chr12 102143188 102143486 -42139003 - AluJb SINE Alu -17 295 1 3159 162 49 30 chr12 102143486 102143843 -42138646 + L1MB7 LINE L1 5779 6157 -27 2024 121 4 0 chr12 102144167 102144440 -42138049 + AluSx SINE Alu 5 278 -34 2046 175 72 36 chr12 102144470 102144945 -42137544 - LTR22B LTR ERVK 0 492 1 4913 153 16 20 chr12 102144945 102145912 -42136577 - HERVK22 LTR ERVK 0 6837 2623 3488 119 0 4 chr12 102145984 102146478 -42136011 - HERVK22 LTR ERVK -2015 4822 4331 679 139 0 0 chr12 102146478 102146579 -42135910 - LTR12 LTR ERV1 -133 581 481 293 303 10 0 chr12 102146580 102146679 -42135810 - LTR30 LTR ERV1 -79 643 544 253 179 90 0 chr12 102146679 102146746 -42135743 - LTR12 LTR ERV1 -437 277 205 1102 113 5 67 chr12 102146785 102146979 -42135510 - LTR12 LTR ERV1 -480 234 53 301 192 0 0 chr12 102146979 102147031 -42135458 - LTR30 LTR ERV1 -670 52 1 4755 118 3 4 chr12 102147031 102147712 -42134777 - HERVK22 LTR ERVK -2503 4334 3655 388 98 0 0 chr12 102147711 102147762 -42134727 - HERVK22 LTR ERVK -4292 2545 2495 * 477 155 0 12 chr12 102147756 102147840 -42134649 - HERVK22 LTR ERVK -3930 2907 2825 * 787 200 21 7 chr12 102147835 102147980 -42134509 - HERVK22 LTR ERVK -4364 2473 2327 3904 143 38 52 chr12 102148373 102149136 -42133353 - HERVK22 LTR ERVK -6083 754 3 2184 167 68 25 chr12 102149223 102149695 -42132794 - LTR22B LTR ERVK 0 492 1 820 144 0 8 chr12 102149729 102149854 -42132635 + FLAM_C SINE Alu 1 124 -19 722 174 22 12 chr12 102149884 102150020 -42132469 - LTR12 LTR ERV1 -234 480 296 310 221 0 0 chr12 102150026 102150094 -42132395 - LTR30 LTR ERV1 -102 620 553 729 147 76 119 chr12 102150095 102150351 -42132138 - LTR12 LTR ERV1 -429 1983 48 2378 82 7 3 chr12 102150353 102150656 -42131833 + AluSx SINE Alu 1 304 -8 247 163 0 0 chr12 102150674 102150717 -42131772 - LTR30 LTR ERV1 -679 43 1 31103 101 9 10 chr12 102150721 102155042 -42127447 - HERV9 LTR ERV1 -4 8395 4078 376 266 37 0 chr12 102155144 102155254 -42127235 + MIR SINE MIR 47 163 -45 255 323 92 27 chr12 102155283 102155366 -42127123 - L2 LINE L2 -4 3309 3233 1719 174 23 16 chr12 102155366 102155676 -42126813 + AluJb SINE Alu 1 312 0 255 323 92 27 chr12 102155676 102155886 -42126603 - L2 LINE L2 -80 3233 2997 555 276 89 36 chr12 102155887 102155925 -42126564 + L2 LINE L2 1805 1840 -1474 2214 105 3 3 chr12 102155925 102156220 -42126269 - AluSg SINE Alu -15 295 1 555 276 89 36 chr12 102156220 102156518 -42125971 + L2 LINE L2 1840 2159 -1155 2285 132 17 13 chr12 102156518 102156921 -42125568 - MER65A LTR ERV1 0 445 1 2149 133 7 0 chr12 102158010 102158310 -42124179 - AluSx SINE Alu -10 302 1 401 136 0 0 chr12 102158311 102158370 -42124119 - AluJo SINE Alu -15 297 239 1089 258 137 58 chr12 102158371 102159107 -42123382 - LTR1B LTR ERV1 0 826 33 1150 189 66 9 chr12 102159113 102159341 -42123148 - AluJo SINE Alu -71 241 1 1052 170 76 52 chr12 102159383 102159605 -42122884 - MER33 DNA MER1_type -2289 296 64 2517 64 0 0 chr12 102159605 102159903 -42122586 - AluY SINE Alu -13 298 1 1052 170 76 52 chr12 102159903 102159969 -42122520 - MER33 DNA MER1_type -2521 64 1 995 319 55 16 chr12 102159975 102160521 -42121968 + L2 LINE L2 2158 2724 -590 2456 100 0 0 chr12 102160573 102160882 -42121607 + AluSx SINE Alu 1 309 -3 1885 118 0 4 chr12 102160891 102161128 -42121361 + AluSx SINE Alu 49 286 -26 198 103 0 0 chr12 102161128 102161157 -42121332 + (CATA)n Simple_repeat Simple_repeat 4 32 0 1885 118 0 4 chr12 102161157 102161181 -42121308 + AluSx SINE Alu 286 309 -3 1251 131 0 0 chr12 102161181 102161349 -42121140 + AluSg/x SINE Alu 134 301 -11 228 171 0 0 chr12 102161349 102161384 -42121105 - Alu SINE Alu -264 36 2 822 156 0 22 chr12 102161520 102161655 -42120834 - FLAM_C SINE Alu 0 133 2 3627 185 60 50 chr12 102161665 102162424 -42120065 - MER21B LTR ERV1 0 863 94 2406 98 0 0 chr12 102162424 102162729 -42119760 - AluSq SINE Alu -8 305 1 3627 185 60 50 chr12 102162729 102162824 -42119665 - MER21B LTR ERV1 -769 94 1 1792 148 62 10 chr12 102163438 102163728 -42118761 + AluSx SINE Alu 1 305 -7 253 117 0 117 chr12 102164728 102164822 -42117667 - AluSg/x SINE Alu -7 295 213 423 0 0 0 chr12 102165017 102165064 -42117425 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 21 57 0 0 chr12 102165105 102165140 -42117349 + AT_rich Low_complexity Low_complexity 1 35 0 968 145 0 0 chr12 102165232 102165370 -42117119 - FLAM_C SINE Alu -3 140 3 204 40 0 0 chr12 102165389 102165414 -42117075 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 2054 119 13 3 chr12 102165990 102166292 -42116197 + AluSx SINE Alu 1 305 -7 300 158 0 0 chr12 102166355 102166412 -42116077 + (TA)n Simple_repeat Simple_repeat 2 58 0 2364 99 7 0 chr12 102167572 102167874 -42114615 + AluSx SINE Alu 1 304 -8 2266 117 0 0 chr12 102167926 102168225 -42114264 + AluSx SINE Alu 1 299 -13 323 48 0 0 chr12 102168266 102168308 -42114181 + L1PB1 LINE L1 5926 5967 -184 2466 85 0 3 chr12 102168316 102168622 -42113867 + AluSx SINE Alu 1 305 -7 304 121 17 17 chr12 102168625 102168683 -42113806 - LTR12 LTR ERV1 -656 58 1 50724 98 8 8 chr12 102168686 102175618 -42106871 - HERV9 LTR ERV1 -2 8397 1462 2408 135 0 0 chr12 102175609 102175956 -42106533 - HERV9 LTR ERV1 -5217 3040 2694 * 7450 127 11 34 chr12 102175953 102177316 -42105173 - HERV9 LTR ERV1 -6935 1464 54 739 165 25 0 chr12 102177338 102177459 -42105030 - LTR12 LTR ERV1 -236 478 355 313 221 0 0 chr12 102177459 102177527 -42104962 - LTR30 LTR ERV1 -102 620 553 773 129 82 169 chr12 102177528 102177783 -42104706 - LTR12 LTR ERV1 -429 285 53 244 231 0 0 chr12 102177783 102177835 -42104654 - LTR30 LTR ERV1 -670 52 1 250 338 56 46 chr12 102177840 102178145 -42104344 + HAL1 LINE L1 59 366 -2141 358 316 132 17 chr12 102178349 102178523 -42103966 - MLT1L LTR MaLR 0 615 422 879 223 87 59 chr12 102178552 102178643 -42103846 - MLT1L LTR MaLR -278 337 250 1888 152 7 16 chr12 102178643 102178952 -42103537 - AluJo SINE Alu -6 306 1 879 223 87 59 chr12 102178952 102179183 -42103306 - MLT1L LTR MaLR -365 250 6 1999 133 0 7 chr12 102179313 102179629 -42102860 + AluSx SINE Alu 1 314 0 2137 140 3 0 chr12 102179950 102180250 -42102239 + AluSx SINE Alu 1 301 -11 1045 165 0 34 chr12 102180251 102180427 -42102062 + AluJb SINE Alu 135 304 -8 1973 164 3 0 chr12 102180576 102180887 -42101602 + AluSx SINE Alu 1 312 0 1084 83 0 0 chr12 102180946 102181079 -42101410 + AluSq/x SINE Alu 1 133 -180 1527 120 74 128 chr12 102181316 102181349 -42101140 - MER65A LTR ERV1 -98 347 314 1995 101 44 10 chr12 102181349 102181647 -42100842 - AluSx SINE Alu -4 308 1 1527 120 74 128 chr12 102181647 102181926 -42100563 - MER65A LTR ERV1 -131 314 55 1780 176 17 0 chr12 102181926 102182216 -42100273 - AluJb SINE Alu -17 295 1 1527 120 74 128 chr12 102182216 102182269 -42100220 - MER65A LTR ERV1 -390 55 1 425 353 113 29 chr12 102182357 102182879 -42099610 + L2 LINE L2 1915 2480 -834 2190 87 35 3 chr12 102182934 102183174 -42099315 + AluSx SINE Alu 1 253 -59 180 0 0 0 chr12 102183174 102183194 -42099295 + (CACTG)n Simple_repeat Simple_repeat 5 24 0 2190 87 35 3 chr12 102183194 102183240 -42099249 + AluSx SINE Alu 253 296 -16 1206 56 14 0 chr12 102183247 102183390 -42099099 + AluSg/x SINE Alu 155 299 -13 2334 96 0 0 chr12 102183648 102183941 -42098548 + AluSx SINE Alu 1 293 -19 552 283 72 39 chr12 102183964 102184224 -42098265 - HsTC2 DNA Tc2 -1178 720 405 2173 132 15 26 chr12 102184224 102184565 -42097924 + MER1B DNA MER1_type 1 337 0 552 283 72 39 chr12 102184565 102184731 -42097758 - HsTC2 DNA Tc2 -1493 405 246 812 164 0 0 chr12 102184772 102184888 -42097601 - FLAM_C SINE Alu -27 116 1 2180 117 0 17 chr12 102184911 102185211 -42097278 + AluSx SINE Alu 1 295 -17 216 335 166 35 chr12 102185213 102185497 -42096992 + L2 LINE L2 2952 3272 0 2349 74 10 13 chr12 102185723 102186033 -42096456 - AluSg SINE Alu -1 309 1 1972 126 7 18 chr12 102189303 102189620 -42092869 + AluSx SINE Alu 1 314 0 208 278 0 0 chr12 102189854 102189908 -42092581 - L2 LINE L2 -5 3308 3255 290 254 114 46 chr12 102190049 102190179 -42092310 - MIR SINE MIR -55 153 15 2003 112 52 7 chr12 102190183 102190469 -42092020 - AluSx SINE Alu -13 299 1 237 158 0 0 chr12 102191107 102191145 -42091344 + Alu SINE Alu 129 166 -137 * 267 167 0 0 chr12 102191142 102191184 -42091305 + FLAM SINE Alu 79 120 -13 2231 129 0 3 chr12 102191427 102191736 -42090753 + AluSq SINE Alu 1 308 -5 885 200 42 0 chr12 102192005 102192170 -42090319 + FAM SINE Alu 1 172 -3 2420 75 10 0 chr12 102192853 102193148 -42089341 - AluSq SINE Alu -15 298 1 3207 208 63 28 chr12 102193155 102194334 -42088155 - L1ME1 LINE L1 -37 6129 4915 1575 170 87 7 chr12 102194390 102194666 -42087823 + AluJb SINE Alu 1 298 -14 349 197 0 0 chr12 102194921 102194992 -42087497 - MIR SINE MIR -119 143 73 1652 178 0 14 chr12 102195366 102195652 -42086837 - AluJb SINE Alu -30 282 1 302 151 12 116 chr12 102195708 102195737 -42086752 - MER116 DNA Mariner -2 78 48 1938 137 3 42 chr12 102195737 102196050 -42086439 + AluSx SINE Alu 1 301 -11 302 151 12 116 chr12 102196050 102196106 -42086383 - MER116 DNA Mariner -32 48 2 753 174 0 0 chr12 102196165 102196286 -42086203 - FLAM_A SINE Alu -11 122 2 231 36 0 0 chr12 102196486 102196514 -42085975 + (GAA)n Simple_repeat Simple_repeat 2 29 0 1246 128 0 0 chr12 102196569 102196741 -42085748 + AluSg/x SINE Alu 137 308 -4 21 0 0 0 chr12 102197650 102197671 -42084818 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 102197725 102197746 -42084743 + AT_rich Low_complexity Low_complexity 1 21 0 273 367 25 0 chr12 102198407 102198527 -42083962 - MIR SINE MIR -120 142 20 228 197 105 13 chr12 102198572 102198648 -42083841 + L3 LINE CR1 670 752 -825 29 70 0 0 chr12 102198705 102198762 -42083727 + AT_rich Low_complexity Low_complexity 1 57 0 2327 98 3 0 chr12 102199741 102200036 -42082453 - AluSp SINE Alu -17 296 1 659 245 151 0 chr12 102200179 102200371 -42082118 + MIR SINE MIR 18 238 -24 27 49 0 0 chr12 102200805 102200846 -42081643 + AT_rich Low_complexity Low_complexity 1 41 0 469 254 50 91 chr12 102200903 102201247 -42081242 - L1MC4a LINE L1 -140 5981 5653 2320 102 0 37 chr12 102201457 102201779 -42080710 + AluSx SINE Alu 1 310 -2 265 313 31 16 chr12 102201938 102202066 -42080423 - L1MC4a LINE L1 -1258 4888 4759 1330 87 0 17 chr12 102202924 102203096 -42079393 + AluSp SINE Alu 130 298 -15 581 169 93 0 chr12 102203097 102203215 -42079274 - L1MC4 LINE L1 0 8042 7914 1111 167 0 21 chr12 102203334 102203526 -42078963 - AluJo SINE Alu -5 307 120 576 243 45 25 chr12 102203550 102203752 -42078737 - L1MC4 LINE L1 -564 7478 7273 568 193 0 18 chr12 102203806 102203920 -42078569 - FLAM_A SINE Alu -6 136 25 238 250 44 44 chr12 102204056 102204192 -42078297 - L1MC5 LINE L1 -525 7436 7301 * 311 289 41 77 chr12 102204167 102204413 -42078076 - L1MC4 LINE L1 -548 7494 7258 524 235 51 42 chr12 102204464 102204724 -42077765 - L1MC4a LINE L1 -624 7228 7003 1755 177 0 3 chr12 102204763 102205051 -42077438 - AluSx SINE Alu -25 287 1 1684 176 7 10 chr12 102205058 102205347 -42077142 - AluJo SINE Alu -24 288 1 381 117 0 0 chr12 102205351 102205411 -42077078 + (TG)n Simple_repeat Simple_repeat 2 61 0 601 242 0 0 chr12 102205416 102205540 -42076949 - FLAM_C SINE Alu -19 124 1 1320 167 42 23 chr12 102205790 102206053 -42076436 - AluJo SINE Alu 0 312 45 624 203 170 0 chr12 102206071 102206224 -42076265 - MER58A DNA MER1_type 0 224 46 1411 184 35 35 chr12 102206443 102206725 -42075764 + AluJo SINE Alu 11 292 -20 233 315 99 0 chr12 102208750 102208861 -42073628 - MIR SINE MIR -58 204 83 201 39 0 0 chr12 102209521 102209547 -42072942 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1662 201 39 6 chr12 102209626 102209959 -42072530 - L1MC1 LINE L1 -14 6319 5976 3476 150 62 23 chr12 102210016 102210052 -42072437 - L1MB3 LINE L1 -15 6168 6135 2297 112 0 0 chr12 102210052 102210364 -42072125 - AluSx SINE Alu 0 312 1 3476 150 62 23 chr12 102210364 102210987 -42071502 - L1MB3 LINE L1 -48 6135 5483 307 79 101 0 chr12 102210996 102211071 -42071418 - L1MB3 LINE L1 -806 5377 5297 2427 68 0 40 chr12 102211085 102211408 -42071081 + AluY SINE Alu 1 310 -1 1966 127 0 72 chr12 102211531 102211862 -42070627 + AluSx SINE Alu 1 307 -5 405 217 7 94 chr12 102212324 102212462 -42070027 - MER115 DNA AcHobo -459 234 109 978 229 70 12 chr12 102212525 102212783 -42069706 - L2 LINE L2 -618 2696 2424 2048 160 0 0 chr12 102212953 102213265 -42069224 + AluSx SINE Alu 1 312 0 338 273 124 30 chr12 102214048 102214198 -42068291 - MIR SINE MIR -61 147 38 2001 139 0 16 chr12 102214315 102214618 -42067871 + AluSx SINE Alu 1 298 -14 2310 112 0 10 chr12 102216828 102217142 -42065347 + AluSx SINE Alu 1 311 -1 295 228 54 87 chr12 102217791 102217940 -42064549 - L1ME4a LINE L1 -34 6087 5944 2614 58 0 3 chr12 102218103 102218414 -42064075 - AluY SINE Alu -1 310 1 212 242 81 16 chr12 102219727 102219789 -42062700 + L2 LINE L2 3207 3272 0 21 0 0 0 chr12 102222863 102222884 -42059605 + GC_rich Low_complexity Low_complexity 1 21 0 2407 71 3 10 chr12 102223956 102224265 -42058224 + AluSq SINE Alu 1 307 -6 202 324 67 79 chr12 102225497 102225750 -42056739 + L2 LINE L2 3004 3253 -19 2451 84 0 0 chr12 102226831 102227141 -42055348 - AluSg SINE Alu 0 310 1 1493 163 35 58 chr12 102227266 102227579 -42054910 - AluJb SINE Alu -6 306 1 245 75 25 0 chr12 102227820 102227860 -42054629 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr12 102228537 102228559 -42053930 + AT_rich Low_complexity Low_complexity 1 22 0 1798 145 15 0 chr12 102228962 102229224 -42053265 - AluJb SINE Alu -46 266 1 2250 114 0 0 chr12 102229375 102229664 -42052825 - AluSq SINE Alu -24 289 1 2350 98 0 0 chr12 102229989 102230286 -42052203 + AluSq SINE Alu 1 297 -16 1813 112 8 15 chr12 102230861 102231030 -42051459 - AluSx SINE Alu -8 304 136 2162 108 0 0 chr12 102231030 102231318 -42051171 - AluSx SINE Alu -2 310 23 1813 112 8 15 chr12 102231318 102231407 -42051082 - AluSx SINE Alu -176 136 48 1071 155 0 0 chr12 102231706 102231861 -42050628 - FRAM SINE Alu -23 153 1 252 179 0 0 chr12 102232010 102232049 -42050440 - Charlie8 DNA MER1_type -2346 71 33 1122 272 153 7 chr12 102232181 102232611 -42049878 + L2 LINE L2 1018 1510 -1804 6668 198 63 30 chr12 102232721 102233180 -42049309 - L1 LINE L1 -817 5329 4886 1596 199 0 7 chr12 102233180 102233481 -42049008 + AluJo SINE Alu 1 299 -13 6668 198 63 30 chr12 102233481 102233573 -42048916 - L1 LINE L1 -1260 4886 4798 1475 204 6 22 chr12 102233573 102233886 -42048603 - AluJo SINE Alu -1 311 4 6668 198 63 30 chr12 102233886 102234143 -42048346 - L1 LINE L1 -1348 4798 4551 1819 138 93 34 chr12 102234143 102234497 -42047992 - THE1C LTR MaLR 0 375 1 6668 198 63 30 chr12 102234497 102235456 -42047033 - L1 LINE L1 -1595 4551 3503 1771 134 16 59 chr12 102235456 102235776 -42046713 - AluJo SINE Alu -6 306 1 8699 165 60 52 chr12 102235776 102235884 -42046605 - L1M4c LINE L1 -4371 2013 1907 2318 94 3 0 chr12 102235884 102236181 -42046308 + AluSc SINE Alu 1 298 -11 8699 165 60 52 chr12 102236181 102236428 -42046061 - L1M4c LINE L1 -4477 1907 1663 1859 153 0 46 chr12 102236428 102236754 -42045735 - AluJb SINE Alu -1 311 1 8699 165 60 52 chr12 102236754 102238388 -42044101 - L1M4c LINE L1 -4721 1663 7 1796 173 0 22 chr12 102238940 102239252 -42043237 - AluJo SINE Alu -7 305 1 1031 136 19 0 chr12 102239786 102239940 -42042549 - AluSg/x SINE Alu -22 290 134 1939 112 0 33 chr12 102239941 102240217 -42042272 - AluSx SINE Alu -19 293 27 1881 111 0 4 chr12 102240356 102240608 -42041881 - AluSq SINE Alu -62 251 1 270 253 13 25 chr12 102241132 102241211 -42041278 - L2 LINE L2 -7 3306 3229 2022 128 3 16 chr12 102241341 102241646 -42040843 + AluSx SINE Alu 1 301 -11 387 0 0 0 chr12 102242007 102242050 -42040439 + (CA)n Simple_repeat Simple_repeat 2 44 0 202 273 0 0 chr12 102242311 102242355 -42040134 + (CACG)n Simple_repeat Simple_repeat 1 44 0 2183 84 36 26 chr12 102245025 102245333 -42037156 - AluY SINE Alu 0 311 1 275 169 225 0 chr12 102247546 102247575 -42034914 + Tigger4(Zombi) DNA MER2_type 1 22 -339 1926 128 17 3 chr12 102247575 102247864 -42034625 + AluSx SINE Alu 1 293 -19 275 169 225 0 chr12 102247864 102247905 -42034584 + Tigger4(Zombi) DNA MER2_type 22 87 -274 * 1824 112 92 112 chr12 102247902 102248348 -42034141 + Tigger4(Zombi) DNA MER2_type 2295 2731 0 2099 100 17 13 chr12 102248645 102248945 -42033544 + AluSq SINE Alu 1 301 -12 2528 66 0 3 chr12 102249762 102250066 -42032423 + AluY SINE Alu 1 303 -8 32 0 0 0 chr12 102250894 102250926 -42031563 + AT_rich Low_complexity Low_complexity 1 32 0 380 302 196 29 chr12 102250934 102251164 -42031325 - MIR SINE MIR -6 256 5 2166 107 0 0 chr12 102251671 102251952 -42030537 + AluSg SINE Alu 1 281 -29 2275 90 0 3 chr12 102252314 102252626 -42029863 - AluY SINE Alu 0 311 1 330 250 23 34 chr12 102252692 102252780 -42029709 - AluJo SINE Alu -122 180 94 305 140 0 0 chr12 102252806 102252856 -42029633 - FLAM_A SINE Alu 0 133 84 2168 105 29 20 chr12 102252876 102253182 -42029307 - AluSx SINE Alu -2 310 2 295 324 27 45 chr12 102253233 102253344 -42029145 + MIR SINE MIR 42 150 -58 182 336 0 55 chr12 102253330 102253440 -42029049 - L2 LINE L2 -345 2927 2824 * 1772 148 0 4 chr12 102253541 102253804 -42028685 - AluSx SINE Alu -2 310 49 2309 100 0 16 chr12 102253813 102254124 -42028365 - AluSc SINE Alu -3 306 1 1115 146 222 42 chr12 102254318 102254593 -42027896 - AluSx SINE Alu 0 318 1 2031 86 23 36 chr12 102255303 102255606 -42026883 - AluSp SINE Alu -14 299 1 2077 136 76 8 chr12 102256805 102257173 -42025316 - MER65A LTR ERV1 0 445 53 229 286 271 0 chr12 102257922 102257992 -42024497 - L2 LINE L2 -33 3239 3151 2296 111 0 0 chr12 102258105 102258403 -42024086 - AluSg SINE Alu -12 298 1 2518 63 0 0 chr12 102259324 102259625 -42022864 + AluY SINE Alu 1 301 -10 927 176 97 0 chr12 102259847 102260012 -42022477 - AluJb SINE Alu 0 312 132 207 0 0 0 chr12 102260012 102260035 -42022454 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1990 124 0 0 chr12 102260035 102260300 -42022189 - AluSx SINE Alu -27 285 21 1621 253 123 85 chr12 102260315 102260525 -42021964 + L2 LINE L2 1525 1725 -1589 2146 118 0 3 chr12 102260525 102260812 -42021677 - AluSg SINE Alu -24 286 1 1621 253 123 85 chr12 102260812 102261410 -42021079 + L2 LINE L2 1725 2386 -928 1929 147 9 101 chr12 102261410 102261772 -42020717 + MLT1B LTR MaLR 1 320 -70 2546 58 0 19 chr12 102261772 102262084 -42020405 - AluY SINE Alu -5 306 1 1929 147 9 101 chr12 102262084 102262149 -42020340 + MLT1B LTR MaLR 320 389 -1 1621 253 123 85 chr12 102262149 102262400 -42020089 + L2 LINE L2 2386 2626 -688 2036 185 63 27 chr12 102262412 102262855 -42019634 - LTR2B LTR ERV1 0 490 32 252 86 0 0 chr12 102262878 102262913 -42019576 + (TAG)n Simple_repeat Simple_repeat 1 35 0 441 149 0 14 chr12 102262913 102262987 -42019502 - AluYb8 SINE Alu -132 186 114 345 269 167 0 chr12 102263117 102263225 -42019264 + L2 LINE L2 2717 2842 -472 1861 191 0 6 chr12 102263225 102263539 -42018950 - AluJo SINE Alu 0 312 1 2229 107 3 0 chr12 102263576 102263867 -42018622 - AluSp SINE Alu -8 305 14 1655 164 0 65 chr12 102263895 102264218 -42018271 - AluJo SINE Alu -6 306 5 1757 151 27 30 chr12 102264664 102264963 -42017526 - AluJb SINE Alu 0 312 15 2486 51 0 74 chr12 102264964 102265300 -42017189 + AluY SINE Alu 1 311 0 199 291 113 28 chr12 102265537 102265678 -42016811 + MIR SINE MIR 96 248 -14 1730 140 10 36 chr12 102266052 102266159 -42016330 + L1PA16 LINE L1 5867 5975 -191 2254 114 0 3 chr12 102266159 102266465 -42016024 + AluSx SINE Alu 1 305 -7 1730 140 10 36 chr12 102266465 102266665 -42015824 + L1PA16 LINE L1 5975 6166 0 615 129 0 11 chr12 102266921 102267014 -42015475 - AluSp SINE Alu -91 222 131 41 48 0 0 chr12 102267103 102267165 -42015324 + AT_rich Low_complexity Low_complexity 1 62 0 345 294 10 0 chr12 102267498 102267600 -42014889 + MIR SINE MIR 49 151 -111 1879 130 8 0 chr12 102267600 102267862 -42014627 + AluSx SINE Alu 1 264 -48 2658 58 0 0 chr12 102268516 102268826 -42013663 - AluY SINE Alu -1 310 1 180 354 118 20 chr12 102268827 102269022 -42013467 + L2 LINE L2 1802 2015 -1299 311 196 93 10 chr12 102269145 102269242 -42013247 - MIR SINE MIR -76 186 82 293 315 108 0 chr12 102270362 102270473 -42012016 - MIR SINE MIR -65 143 21 2450 50 4 0 chr12 102270572 102270887 -42011602 - AluSg SINE Alu 0 316 1 914 128 7 54 chr12 102271049 102271197 -42011292 + FLAM_C SINE Alu 3 143 0 1023 152 28 17 chr12 102271212 102271390 -42011099 + AluJb SINE Alu 120 299 -13 237 388 0 0 chr12 102271752 102271855 -42010634 - L3 LINE CR1 -182 1395 1293 1666 158 10 24 chr12 102271948 102272246 -42010243 - AluJo SINE Alu -18 294 1 1136 177 0 0 chr12 102272320 102272501 -42009988 - AluJb SINE Alu -129 183 3 339 188 100 100 chr12 102272612 102272782 -42009707 - MIR SINE MIR -91 171 2 2294 88 23 16 chr12 102273164 102273472 -42009017 + AluSg SINE Alu 1 310 0 189 0 0 0 chr12 102274260 102274281 -42008208 + (A)n Simple_repeat Simple_repeat 1 21 0 941 166 38 0 chr12 102275614 102275771 -42006718 - MER3 DNA MER1_type -1 208 46 2278 132 0 0 chr12 102275807 102276117 -42006372 + AluSx SINE Alu 1 310 -2 1721 136 3 60 chr12 102276318 102276620 -42005869 - AluJb SINE Alu -19 293 9 2373 87 3 7 chr12 102276636 102276946 -42005543 - AluSc SINE Alu 0 309 1 239 310 37 48 chr12 102276950 102277137 -42005352 + L2 LINE L2 2073 2257 -1057 1782 164 23 10 chr12 102277253 102277558 -42004931 + AluSx SINE Alu 1 309 -3 476 185 102 19 chr12 102277585 102277693 -42004796 - FLAM_A SINE Alu -1 141 25 631 251 39 94 chr12 102277693 102278023 -42004466 + L2 LINE L2 2228 2539 -775 274 318 82 48 chr12 102278033 102278457 -42004032 + L2 LINE L2 2643 3188 -84 2340 111 0 0 chr12 102278457 102278754 -42003735 - AluSx SINE Alu -15 297 1 274 318 82 48 chr12 102278754 102278839 -42003650 + L2 LINE L2 3188 3269 -3 216 346 75 45 chr12 102278876 102279241 -42003248 - L2 LINE L2 -488 2826 2440 1368 82 62 215 chr12 102279241 102279594 -42002895 - AluSq SINE Alu -14 299 1 216 346 75 45 chr12 102279594 102279733 -42002756 - L2 LINE L2 -874 2440 2307 1555 144 122 11 chr12 102279875 102280138 -42002351 - AluSg1 SINE Alu -17 292 1 1820 167 0 3 chr12 102280178 102280478 -42002011 + AluJb SINE Alu 1 299 -13 244 191 0 0 chr12 102280478 102280525 -42001964 - L2 LINE L2 -9 3304 3258 2053 134 13 3 chr12 102280925 102281223 -42001266 - AluSx SINE Alu -11 301 1 1660 154 44 54 chr12 102282132 102282430 -42000059 + AluJo SINE Alu 3 297 -15 2194 124 0 6 chr12 102282913 102283228 -41999261 + AluSq SINE Alu 1 313 0 2261 121 3 0 chr12 102283545 102283852 -41998637 - AluSp SINE Alu -5 308 1 2121 103 3 20 chr12 102284431 102284732 -41997757 - AluSx SINE Alu -16 296 1 2252 110 0 7 chr12 102284738 102285046 -41997443 - AluY SINE Alu -5 306 1 277 169 34 17 chr12 102285427 102285486 -41997003 - MER103 DNA DNA -55 111 52 1985 116 24 7 chr12 102286338 102286632 -41995857 - AluSx SINE Alu -13 299 1 784 158 53 0 chr12 102286632 102286765 -41995724 - AluJo SINE Alu -171 141 2 736 217 36 0 chr12 102286768 102286934 -41995555 - MER58A DNA MER1_type -9 215 44 1837 165 0 28 chr12 102287099 102287420 -41995069 - AluJb SINE Alu 0 312 1 234 151 38 38 chr12 102287421 102287474 -41995015 + MLT1J LTR MaLR 428 480 -31 2280 109 0 19 chr12 102288903 102289215 -41993274 - AluSg SINE Alu -4 306 1 1955 124 14 3 chr12 102289782 102290064 -41992425 + AluSx SINE Alu 1 285 -27 1789 133 51 48 chr12 102290243 102290536 -41991953 + AluSq SINE Alu 1 294 -19 2630 36 0 7 chr12 102290800 102291101 -41991388 + AluY SINE Alu 1 299 -12 542 251 72 5 chr12 102291551 102291758 -41990731 - L1ME4a LINE L1 -264 5857 5637 1641 172 76 3 chr12 102291839 102292129 -41990360 - AluSx SINE Alu -1 311 1 2093 96 46 0 chr12 102292290 102292571 -41989918 - AluSq SINE Alu -14 299 6 2211 86 4 0 chr12 102293245 102293523 -41988966 - AluSp SINE Alu -8 305 27 2529 85 0 0 chr12 102293621 102293927 -41988562 - AluSq SINE Alu -7 306 1 1155 162 88 108 chr12 102294264 102294561 -41987928 + AluJb SINE Alu 3 293 -9 584 199 37 6 chr12 102294735 102294746 -41987743 + Charlie7 DNA MER1_type 2432 2441 -171 2246 118 0 0 chr12 102294746 102295051 -41987438 + AluSx SINE Alu 1 305 -7 584 199 37 6 chr12 102295051 102295200 -41987289 + Charlie7 DNA MER1_type 2441 2597 -15 296 343 126 7 chr12 102295401 102295611 -41986878 + MIR SINE MIR 3 230 -32 272 312 75 0 chr12 102295671 102295764 -41986725 + MIR SINE MIR 2 101 -161 21 0 0 0 chr12 102295769 102295790 -41986699 + AT_rich Low_complexity Low_complexity 1 21 0 2007 104 4 4 chr12 102295823 102296093 -41986396 - AluSx SINE Alu -16 296 27 203 146 24 0 chr12 102296142 102296183 -41986306 + (CAT)n Simple_repeat Simple_repeat 3 44 0 1292 159 0 61 chr12 102296198 102296462 -41986027 - AluJo SINE Alu 0 312 65 305 317 99 25 chr12 102296646 102296807 -41985682 + MER5B DNA MER1_type 6 178 0 236 261 29 0 chr12 102297093 102297162 -41985327 - MIR3 SINE MIR -20 188 118 906 125 0 8 chr12 102297165 102297293 -41985196 + FLAM_C SINE Alu 1 127 -16 1884 153 7 7 chr12 102297379 102297679 -41984810 - AluJb SINE Alu -12 300 1 2275 112 3 0 chr12 102298209 102298512 -41983977 + AluSc SINE Alu 1 304 -5 278 167 21 0 chr12 102298512 102298560 -41983929 + HY1 scRNA scRNA 2 50 -62 307 287 10 10 chr12 102298731 102298832 -41983657 + MIR SINE MIR 53 153 -109 1592 167 0 4 chr12 102299729 102299987 -41982502 + AluJb SINE Alu 52 308 -4 2262 100 10 10 chr12 102300329 102300638 -41981851 - AluSx SINE Alu -3 309 1 2575 62 0 0 chr12 102300644 102300950 -41981539 - AluY SINE Alu -5 306 1 2222 126 0 7 chr12 102301015 102301325 -41981164 - AluSg SINE Alu 0 310 3 284 228 43 33 chr12 102301332 102301424 -41981065 + MIR SINE MIR 95 187 -75 2106 111 54 0 chr12 102301489 102301786 -41980703 + AluSq SINE Alu 1 313 0 1133 270 48 11 chr12 102301807 102302163 -41980326 + L1ME3A LINE L1 5429 5797 -373 1032 154 12 12 chr12 102302167 102302336 -41980153 + FRAM SINE Alu 1 169 -7 251 207 98 12 chr12 102302378 102302460 -41980029 + L1ME3A LINE L1 5861 5949 -221 2233 136 3 0 chr12 102302533 102302842 -41979647 + AluSx SINE Alu 2 311 -1 1378 155 87 45 chr12 102303516 102303780 -41978709 + AluJo SINE Alu 1 275 -37 2012 139 0 7 chr12 102304309 102304603 -41977886 - AluSx SINE Alu -20 292 1 332 261 80 14 chr12 102304747 102304885 -41977604 + L1ME LINE L1 5672 5818 -303 2309 101 7 0 chr12 102304898 102305195 -41977294 - AluSp SINE Alu -14 299 1 1509 187 0 81 chr12 102305215 102305536 -41976953 - AluJo SINE Alu -17 295 1 8976 158 28 12 chr12 102305536 102306895 -41975594 + ERVL-D LTR ERVL 4013 5378 -276 279 79 0 0 chr12 102306895 102306933 -41975556 + (TA)n Simple_repeat Simple_repeat 1 38 0 8976 158 28 12 chr12 102306933 102307214 -41975275 + ERVL-D LTR ERVL 5378 5653 -1 1002 100 60 0 chr12 102307215 102307365 -41975124 + MLT2D LTR ERVL 1 159 -255 2027 136 0 31 chr12 102307520 102307837 -41974652 - AluJb SINE Alu -5 307 1 1281 254 64 17 chr12 102308243 102308589 -41973900 - LTR16A LTR ERVL 0 450 89 24 0 0 0 chr12 102308846 102308870 -41973619 + AT_rich Low_complexity Low_complexity 1 24 0 585 264 58 66 chr12 102309404 102309486 -41973003 - MIR SINE MIR -21 241 160 2389 99 0 3 chr12 102309486 102309799 -41972690 - AluSx SINE Alu 0 312 1 585 264 58 66 chr12 102309799 102309958 -41972531 - MIR SINE MIR -102 160 2 1861 146 43 130 chr12 102310248 102310640 -41971849 - Looper DNA T2_type -1013 545 120 1244 115 31 5 chr12 102310640 102310831 -41971658 + L1MA3 LINE L1 6110 6305 0 1861 146 43 130 chr12 102310831 102310984 -41971505 - Looper DNA T2_type -1438 120 48 2050 116 55 0 chr12 102310984 102311277 -41971212 - AluSx SINE Alu -3 309 1 1861 146 43 130 chr12 102311277 102311290 -41971199 - Looper DNA T2_type -1510 48 35 369 276 141 25 chr12 102311342 102311441 -41971048 - MIR SINE MIR -75 187 101 2182 122 0 10 chr12 102311441 102311752 -41970737 + AluSg SINE Alu 3 310 0 369 276 141 25 chr12 102311752 102311815 -41970674 - MIR SINE MIR -161 101 6 2193 114 3 0 chr12 102311845 102312142 -41970347 - AluSq SINE Alu -15 298 1 275 185 31 0 chr12 102312201 102312266 -41970223 - L1MC4 LINE L1 -1336 6706 6640 1186 90 83 0 chr12 102312305 102312461 -41970028 - AluSq SINE Alu -140 173 5 5285 41 2 8 chr12 102312486 102313097 -41969392 - L1PA5 LINE L1 0 6154 5548 340 279 0 13 chr12 102313145 102313224 -41969265 + L2 LINE L2 3178 3255 -17 210 294 0 0 chr12 102313179 102313230 -41969259 + MIR SINE MIR 207 257 -5 * 195 252 97 29 chr12 102313309 102313412 -41969077 - L2 LINE L2 -18 3295 3186 2412 80 3 0 chr12 102313594 102313895 -41968594 - AluSc SINE Alu -7 302 1 1967 159 0 9 chr12 102313938 102314253 -41968236 - AluSx SINE Alu 0 312 1 293 0 27 0 chr12 102314482 102314519 -41967970 + (TTA)n Simple_repeat Simple_repeat 2 39 0 825 193 7 0 chr12 102314530 102314675 -41967814 - AluJb SINE Alu -32 280 135 1646 176 7 7 chr12 102314702 102314997 -41967492 + AluSx SINE Alu 1 295 -17 29 28 0 0 chr12 102315170 102315206 -41967283 + AT_rich Low_complexity Low_complexity 1 36 0 861 218 217 98 chr12 102315267 102315768 -41966721 + MLT1G1 LTR MaLR 31 595 0 211 234 0 78 chr12 102315770 102315834 -41966655 + MIR3 SINE MIR 110 168 -40 200 256 50 116 chr12 102315989 102316110 -41966379 - L3 LINE CR1 -802 775 663 456 275 144 60 chr12 102317231 102317461 -41965028 + MLT1K LTR MaLR 150 359 -229 2293 78 0 3 chr12 102317461 102317790 -41964699 + AluY SINE Alu 1 328 0 456 275 144 60 chr12 102317790 102317961 -41964528 + MLT1K LTR MaLR 359 586 -2 240 206 0 43 chr12 102318569 102318661 -41963828 + T-rich Low_complexity Low_complexity 3 90 0 227 296 56 32 chr12 102319031 102319156 -41963333 + L2 LINE L2 3152 3279 -34 1719 207 0 0 chr12 102319160 102319455 -41963034 - AluJb SINE Alu -17 295 1 487 186 177 35 chr12 102319466 102319579 -41962910 - AluSg1 SINE Alu -179 130 2 1977 123 62 3 chr12 102320261 102320553 -41961936 - AluSx SINE Alu -3 309 1 1734 181 9 19 chr12 102321441 102321731 -41960758 + AluJb SINE Alu 1 289 -23 195 42 0 0 chr12 102321731 102321755 -41960734 + (GA)n Simple_repeat Simple_repeat 2 25 0 1734 181 9 19 chr12 102321755 102321779 -41960710 + AluJb SINE Alu 289 312 0 385 288 105 47 chr12 102322365 102322556 -41959933 + MIR SINE MIR 49 250 -12 878 161 0 91 chr12 102322564 102322750 -41959739 + AluJo SINE Alu 2 170 -142 1895 38 0 0 chr12 102322756 102323034 -41959455 + AluY SINE Alu 72 349 0 1291 238 41 76 chr12 102323510 102324164 -41958325 - L2 LINE L2 0 3313 2688 1237 159 0 5 chr12 102324244 102324433 -41958056 + MER5A DNA MER1_type 2 189 0 345 258 67 25 chr12 102325357 102325477 -41957012 - L2 LINE L2 0 3313 3189 22 35 0 0 chr12 102327008 102327037 -41955452 + AT_rich Low_complexity Low_complexity 1 29 0 416 250 0 0 chr12 102327076 102327164 -41955325 + MER5A DNA MER1_type 15 102 -87 842 195 0 19 chr12 102327183 102327337 -41955152 + FRAM SINE Alu 1 151 -15 314 195 158 0 chr12 102327658 102327740 -41954749 + MER103 DNA DNA 17 111 -55 2257 102 3 10 chr12 102328119 102328432 -41954057 + AluSx SINE Alu 1 311 -1 185 222 0 0 chr12 102328500 102328536 -41953953 - L2 LINE L2 -9 3263 3228 441 284 14 7 chr12 102328657 102328798 -41953691 - MIR SINE MIR 0 262 121 2292 113 0 0 chr12 102328967 102329277 -41953212 - AluSx SINE Alu -2 310 1 2272 114 3 0 chr12 102330165 102330517 -41951972 + AluSx SINE Alu 4 356 0 299 266 0 0 chr12 102330581 102330645 -41951844 + MER63 DNA MER1_type 682 745 -317 298 281 15 84 chr12 102330755 102330958 -41951531 - MER5A DNA MER1_type 0 189 1 1077 159 15 20 chr12 102330987 102331188 -41951301 + AluJo SINE Alu 113 312 0 2073 138 0 22 chr12 102332409 102332721 -41949768 - AluJo SINE Alu -7 305 1 1672 161 97 10 chr12 102333116 102333426 -41949063 + MER2 DNA MER2_type 9 345 0 389 195 0 26 chr12 102333430 102333507 -41948982 - MIR SINE MIR -160 102 28 1904 148 0 33 chr12 102334094 102334399 -41948090 - AluJo SINE Alu -15 297 3 238 283 101 40 chr12 102334693 102334792 -41947697 - L2 LINE L2 0 3272 3168 309 273 182 11 chr12 102334916 102335103 -41947386 - L2 LINE L2 -8 3305 3087 341 225 43 7 chr12 102335247 102335385 -41947104 + GA-rich Low_complexity Low_complexity 3 145 0 2198 97 3 3 chr12 102335635 102335923 -41946566 + AluSx SINE Alu 13 300 -12 2020 136 7 3 chr12 102336150 102336444 -41946045 - AluSx SINE Alu -17 295 1 2077 140 0 9 chr12 102337524 102337839 -41944650 - AluSx SINE Alu 0 312 1 243 278 114 90 chr12 102338264 102338519 -41943970 - MIR SINE MIR 0 262 2 2207 105 0 14 chr12 102338952 102339246 -41943243 + AluSq SINE Alu 1 290 -23 2162 123 7 0 chr12 102339593 102339903 -41942586 + AluSx SINE Alu 1 312 0 466 255 10 0 chr12 102340934 102341032 -41941457 + L2 LINE L2 3174 3272 0 571 334 108 66 chr12 102342364 102343415 -41939074 + L2 LINE L2 1879 2973 -341 298 326 50 14 chr12 102343421 102343562 -41938927 - L2 LINE L2 -8 3305 3160 2083 131 6 3 chr12 102343584 102343896 -41938593 + AluSq SINE Alu 1 313 0 336 219 0 0 chr12 102344347 102344411 -41938078 + L1MB2 LINE L1 6101 6164 -7 2183 123 3 0 chr12 102344499 102344808 -41937681 - AluSx SINE Alu -2 310 1 225 0 0 0 chr12 102345321 102345346 -41937143 + (A)n Simple_repeat Simple_repeat 1 25 0 267 248 37 77 chr12 102345636 102345891 -41936598 + L1ME3 LINE L1 5725 5958 -204 2020 182 76 8 chr12 102346084 102346453 -41936036 + MSTD LTR MaLR 1 394 -2 2028 128 42 0 chr12 102346599 102346888 -41935601 + AluSx SINE Alu 1 301 -11 676 256 81 5 chr12 102347087 102347298 -41935191 + MER65A LTR ERV1 51 277 -168 1817 171 31 0 chr12 102347553 102347846 -41934643 - AluJb SINE Alu -10 302 1 1975 143 0 17 chr12 102348381 102348682 -41933807 - AluSx SINE Alu -16 296 1 806 164 0 0 chr12 102348705 102348821 -41933668 + FLAM_C SINE Alu 1 116 -27 593 280 82 40 chr12 102348862 102349028 -41933461 + HsTC2 DNA Tc2 246 404 -1494 2341 129 15 24 chr12 102349028 102349368 -41933121 - MER1B DNA MER1_type 0 337 1 593 280 82 40 chr12 102349368 102349651 -41932838 + HsTC2 DNA Tc2 404 756 -1142 2312 96 0 0 chr12 102349651 102349944 -41932545 - AluSx SINE Alu -19 293 1 593 280 82 40 chr12 102349944 102350013 -41932476 + HsTC2 DNA Tc2 756 821 -1077 1731 161 10 30 chr12 102350395 102350699 -41931790 - AluJb SINE Alu -14 298 1 2433 83 0 10 chr12 102351242 102351554 -41930935 + AluY SINE Alu 1 309 -2 222 338 25 12 chr12 102351561 102351641 -41930848 - MER5A DNA MER1_type -10 179 99 188 224 41 165 chr12 102351574 102351660 -41930829 + MER5A DNA MER1_type 35 92 -97 * 1743 152 14 7 chr12 102351660 102351962 -41930527 + AluJb SINE Alu 5 308 0 188 224 41 165 chr12 102351962 102352044 -41930445 + MER5A DNA MER1_type 92 183 -6 1204 118 0 0 chr12 102352434 102352595 -41929894 + AluJb SINE Alu 132 292 -20 2297 87 3 0 chr12 102353068 102353366 -41929123 - AluSx SINE Alu -13 299 1 304 281 45 0 chr12 102354815 102354904 -41927585 + L2 LINE L2 3202 3294 -19 2259 98 0 40 chr12 102354974 102355299 -41927190 - AluSq SINE Alu -1 312 1 1113 137 15 10 chr12 102355305 102355524 -41926965 - AluSg/x SINE Alu 0 302 83 1223 82 0 0 chr12 102355542 102355689 -41926800 - AluSq/x SINE Alu -166 147 1 427 82 55 14 chr12 102355698 102355771 -41926718 - L1MB4 LINE L1 0 6180 6105 1305 182 13 4 chr12 102355915 102356146 -41926343 + AluJb SINE Alu 72 304 -8 289 288 56 48 chr12 102356215 102356340 -41926149 - L3 LINE CR1 -189 1388 1263 377 179 0 0 chr12 102356738 102356805 -41925684 + MER66B LTR ERV1 1 67 -419 1436 96 0 50 chr12 102356807 102356998 -41925491 + MER66B-int LTR ERV1 6469 6649 -27 1974 64 24 119 chr12 102356998 102357326 -41925163 + AluY SINE Alu 1 297 -14 1436 96 0 50 chr12 102357326 102357352 -41925137 + MER66B-int LTR ERV1 6649 6675 -1 1890 158 3 46 chr12 102357353 102357431 -41925058 + MER66B LTR ERV1 1 81 -405 2305 97 3 0 chr12 102357431 102357731 -41924758 + AluSp SINE Alu 2 302 -11 1890 158 3 46 chr12 102357731 102358000 -41924489 + MER66B LTR ERV1 81 333 -153 1745 144 29 16 chr12 102358027 102358367 -41924122 - MER4A LTR ERV1 0 664 262 612 116 42 11 chr12 102358368 102358463 -41924026 - MER4A LTR ERV1 -566 98 1 558 110 0 0 chr12 102358463 102358535 -41923954 + MER66B LTR ERV1 415 486 0 193 281 105 0 chr12 102359115 102359172 -41923317 + L3 LINE CR1 1384 1446 -131 440 102 17 0 chr12 102359186 102359245 -41923244 - AluSp/q SINE Alu -24 289 230 303 237 21 21 chr12 102360118 102360211 -41922278 + GA-rich Low_complexity Low_complexity 5 97 0 * 824 249 54 84 chr12 102360194 102360239 -41922250 + L1MC5 LINE L1 7507 7552 -409 2120 133 0 9 chr12 102360239 102360554 -41921935 + AluSq SINE Alu 1 312 -1 824 249 54 84 chr12 102360554 102360951 -41921538 + L1MC5 LINE L1 7552 7915 -46 207 0 0 0 chr12 102361088 102361111 -41921378 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1049 147 0 41 chr12 102361111 102361281 -41921208 - AluSg/x SINE Alu -32 277 115 22 0 0 0 chr12 102361333 102361355 -41921134 + AT_rich Low_complexity Low_complexity 1 22 0 430 257 50 36 chr12 102361410 102361550 -41920939 - MIR SINE MIR -110 152 11 912 282 112 17 chr12 102361614 102361998 -41920491 + L2 LINE L2 2682 3140 -173 1645 180 0 41 chr12 102361998 102362315 -41920174 - AluJo SINE Alu -8 304 1 912 282 112 17 chr12 102362315 102362508 -41919981 + L2 LINE L2 3140 3313 0 369 290 16 12 chr12 102362642 102362759 -41919730 + MIR SINE MIR 43 163 -45 186 167 0 0 chr12 102363651 102363687 -41918802 + GA-rich Low_complexity Low_complexity 1 36 0 2479 101 45 28 chr12 102363706 102364064 -41918425 - THE1B LTR MaLR 0 364 1 2281 68 18 0 chr12 102364927 102365208 -41917281 - AluSp SINE Alu -27 286 1 3250 112 6 15 chr12 102365371 102365837 -41916652 - L1PA14 LINE L1 0 6161 5700 1233 81 6 0 chr12 102365837 102365998 -41916491 + L1PA14 LINE L1 5571 5732 -429 894 45 0 0 chr12 102366228 102366339 -41916150 + (CGTAA)n Simple_repeat Simple_repeat 3 113 0 1762 147 10 23 chr12 102367412 102367711 -41914778 + AluJb SINE Alu 5 299 -13 599 270 75 6 chr12 102367753 102367927 -41914562 - MIR SINE MIR -31 231 46 225 276 130 68 chr12 102368040 102368232 -41914257 - MIR SINE MIR -32 230 19 1878 140 20 14 chr12 102368429 102368722 -41913767 + AluJb SINE Alu 1 295 -17 210 259 0 17 chr12 102368802 102368860 -41913629 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 1781 153 7 33 chr12 102368992 102369292 -41913197 + AluJo SINE Alu 1 292 -20 945 263 41 21 chr12 102369292 102369626 -41912863 + L2 LINE L2 1770 2110 -1204 2183 106 0 7 chr12 102370237 102370542 -41911947 + AluSq SINE Alu 1 303 0 477 206 71 43 chr12 102371089 102371230 -41911259 - L1ME4a LINE L1 0 6121 5977 1763 147 33 0 chr12 102371269 102371542 -41910947 + AluJo SINE Alu 24 305 -7 2420 86 0 3 chr12 102372390 102372692 -41909797 - AluSg SINE Alu -9 301 1 904 203 25 0 chr12 102372722 102372880 -41909609 + FAM SINE Alu 1 162 -13 295 195 81 73 chr12 102372961 102373084 -41909405 - L1ME4a LINE L1 -327 5794 5671 440 175 48 87 chr12 102373106 102373209 -41909280 + MER58 DNA MER1_type 1 99 -2321 1208 231 146 31 chr12 102373325 102373853 -41908636 - L2 LINE L2 0 3313 2721 1133 225 259 0 chr12 102373853 102374208 -41908281 - L2 LINE L2 -2093 1221 775 1200 265 112 106 chr12 102374290 102375232 -41907257 - L1ME4a LINE L1 -1367 4779 3845 5829 60 0 1 chr12 102375232 102375919 -41906570 - L1PA8 LINE L1 0 6172 5487 1200 265 112 106 chr12 102375919 102376357 -41906132 - L1ME4a LINE L1 -2301 3845 3411 2125 108 24 0 chr12 102376357 102376645 -41905844 - AluY SINE Alu -16 295 1 1200 265 112 106 chr12 102376645 102377193 -41905296 - L1ME4a LINE L1 -2735 3411 2834 2201 117 0 10 chr12 102377193 102377501 -41904988 + AluSx SINE Alu 1 305 -7 1200 265 112 106 chr12 102377501 102377539 -41904950 - L1ME4a LINE L1 -3312 2834 2798 269 254 48 0 chr12 102377597 102377660 -41904829 - MER45 DNA AcHobo -1 1580 1515 259 203 108 0 chr12 102378119 102378193 -41904296 - L1MC4 LINE L1 -1 8041 7960 981 139 11 86 chr12 102379418 102379605 -41902884 - AluJ SINE Alu -11 301 129 25 51 0 0 chr12 102379938 102379977 -41902512 + AT_rich Low_complexity Low_complexity 1 39 0 233 196 0 0 chr12 102381348 102381394 -41901095 + C-rich Low_complexity Low_complexity 1 46 0 849 216 7 7 chr12 102381408 102381561 -41900928 - AluJ SINE Alu -159 153 1 293 194 30 30 chr12 102381601 102381668 -41900821 + MIR SINE MIR 176 242 -20 2151 111 0 111 chr12 102381904 102382281 -41900208 - MER1B DNA MER1_type -2 335 1 2219 117 0 0 chr12 102382301 102382583 -41899906 + AluSx SINE Alu 1 282 -30 417 90 0 0 chr12 102382584 102382651 -41899838 + (CATA)n Simple_repeat Simple_repeat 2 68 0 325 389 51 47 chr12 102382755 102383030 -41899459 + L2 LINE L2 2995 3270 -2 465 282 233 5 chr12 102383928 102384134 -41898355 + MIR SINE MIR 2 254 -8 2133 132 3 0 chr12 102384381 102384540 -41897949 - AluSx SINE Alu -15 297 135 1767 91 0 0 chr12 102384540 102384760 -41897729 - AluSg SINE Alu -90 220 1 2133 132 3 0 chr12 102384760 102384896 -41897593 - AluSx SINE Alu -177 135 1 226 206 79 16 chr12 102385501 102385564 -41896925 - L2 LINE L2 -71 3242 3176 548 241 222 35 chr12 102385701 102385904 -41896585 + L2 LINE L2 979 1219 -2095 707 226 156 27 chr12 102385904 102386230 -41896259 + L2 LINE L2 2719 3082 -231 250 247 27 14 chr12 102386269 102386342 -41896147 - L2 LINE L2 -71 3242 3169 227 280 13 13 chr12 102386328 102386403 -41896086 - MIR SINE MIR 0 262 188 * 241 273 117 84 chr12 102386401 102386463 -41896026 + MIR3 SINE MIR 47 106 -102 326 23 0 23 chr12 102386463 102386507 -41895982 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1999 122 0 17 chr12 102386511 102386798 -41895691 - AluSx SINE Alu -30 282 1 241 273 117 84 chr12 102386798 102386884 -41895605 + MIR3 SINE MIR 108 205 -3 1300 82 35 6 chr12 102387010 102387181 -41895308 + AluSg/x SINE Alu 123 298 -12 1153 108 108 0 chr12 102387352 102387519 -41894970 - MER30B DNA MER1_type -4 186 2 2281 98 20 3 chr12 102387946 102388251 -41894238 - L1PB2 LINE L1 -3 6148 5839 1578 120 0 0 chr12 102389542 102389751 -41892738 + AluSg/x SINE Alu 83 291 -19 31 88 0 0 chr12 102389933 102390013 -41892476 + AT_rich Low_complexity Low_complexity 1 80 0 1868 152 0 23 chr12 102390013 102390315 -41892174 + AluJb SINE Alu 1 295 -17 188 122 24 0 chr12 102390846 102390887 -41891602 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 1727 148 23 29 chr12 102391225 102391535 -41890954 - AluJo SINE Alu -4 308 1 1832 154 13 7 chr12 102391840 102392145 -41890344 + AluJb SINE Alu 1 307 -5 530 245 46 108 chr12 102392389 102393489 -41889000 - L1MC4 LINE L1 -291 7751 6733 22 35 0 0 chr12 102393659 102393688 -41888801 + AT_rich Low_complexity Low_complexity 1 29 0 2070 125 0 4 chr12 102394056 102394337 -41888152 + AluSx SINE Alu 1 280 -32 202 27 0 54 chr12 102394337 102394374 -41888115 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 670 294 57 16 chr12 102394475 102394723 -41887766 + MIR SINE MIR 3 260 -2 1894 153 0 17 chr12 102394776 102395077 -41887412 + AluJb SINE Alu 4 299 -13 24 67 0 0 chr12 102396772 102396817 -41885672 + AT_rich Low_complexity Low_complexity 1 45 0 225 94 0 0 chr12 102397207 102397272 -41885217 - AluY SINE Alu 0 315 251 2339 47 4 0 chr12 102397272 102397547 -41884942 - AluY SINE Alu -35 276 1 1264 185 20 64 chr12 102397685 102397983 -41884506 + AluJo SINE Alu 1 285 -27 2314 105 0 0 chr12 102398129 102398424 -41884065 - AluSx SINE Alu -17 295 1 27 0 0 0 chr12 102398426 102398453 -41884036 + AT_rich Low_complexity Low_complexity 1 27 0 211 176 113 13 chr12 102398822 102398981 -41883508 + (CAT)n Simple_repeat Simple_repeat 1 175 0 * 333 63 219 17 chr12 102398865 102399362 -41883127 + (CATCC)n Simple_repeat Simple_repeat 1 596 0 319 68 233 0 chr12 102399449 102399595 -41882894 + (CATCC)n Simple_repeat Simple_repeat 1 180 0 1742 166 35 3 chr12 102400743 102401027 -41881462 + AluJb SINE Alu 1 293 -19 1863 130 7 4 chr12 102401353 102401622 -41880867 + AluJo SINE Alu 26 295 -17 821 270 14 9 chr12 102401645 102401867 -41880622 - MIR SINE MIR -17 245 23 1858 137 0 35 chr12 102402154 102402469 -41880020 - AluJo SINE Alu 0 312 9 616 148 0 20 chr12 102402817 102402918 -41879571 + AluSg/x SINE Alu 205 303 -7 2481 44 0 0 chr12 102403179 102403472 -41879017 - AluY SINE Alu -18 293 1 259 331 28 14 chr12 102403481 102403623 -41878866 - MER5A DNA MER1_type -45 144 1 2367 79 6 19 chr12 102404203 102404519 -41877970 - AluSx SINE Alu 0 312 1 1591 192 0 17 chr12 102405346 102405637 -41876852 + AluJb SINE Alu 14 299 -13 945 184 51 15 chr12 102405803 102405999 -41876490 - AluJo SINE Alu -23 289 87 450 254 49 8 chr12 102406170 102406292 -41876197 - MIR SINE MIR -77 185 59 339 285 31 31 chr12 102406467 102406597 -41875892 - L2 LINE L2 0 3313 3184 1814 138 14 21 chr12 102407755 102407887 -41874602 + AluJo SINE Alu 1 132 -180 2443 96 0 6 chr12 102407887 102408200 -41874289 + AluSx SINE Alu 1 311 -1 1814 138 14 21 chr12 102408200 102408356 -41874133 + AluJo SINE Alu 132 287 -25 24 67 0 0 chr12 102408917 102408962 -41873527 + AT_rich Low_complexity Low_complexity 1 45 0 2029 129 0 0 chr12 102409773 102410053 -41872436 + AluSx SINE Alu 1 280 -32 234 0 0 0 chr12 102410055 102410081 -41872408 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 218 404 38 25 chr12 102410174 102410414 -41872075 + L2 LINE L2 2629 2871 -443 332 320 123 26 chr12 102410545 102410783 -41871706 + L2 LINE L2 1907 2175 -1139 2544 84 0 3 chr12 102410783 102411094 -41871395 - AluSg SINE Alu 0 310 1 332 320 123 26 chr12 102411094 102411124 -41871365 + L2 LINE L2 2175 2201 -1113 1938 133 20 20 chr12 102411311 102411612 -41870877 - AluJb SINE Alu -11 301 1 1055 308 192 28 chr12 102411848 102412504 -41869985 + L2 LINE L2 2210 2995 -318 353 57 0 19 chr12 102412504 102412557 -41869932 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 1055 308 192 28 chr12 102412557 102412617 -41869872 + L2 LINE L2 2995 3044 -269 951 308 86 0 chr12 102412679 102413052 -41869437 + LTR16A LTR ERVL 17 421 -29 315 347 82 0 chr12 102413079 102413226 -41869263 + L2 LINE L2 3118 3276 -37 933 277 45 0 chr12 102413262 102413482 -41869007 - MIR SINE MIR -31 231 2 306 0 0 0 chr12 102413483 102413517 -41868972 + (T)n Simple_repeat Simple_repeat 1 34 0 517 259 30 7 chr12 102413597 102413732 -41868757 - L2 LINE L2 -2 3311 3174 3277 109 2 42 chr12 102414021 102414525 -41867964 + MER1A DNA MER1_type 46 529 0 485 276 78 69 chr12 102414690 102414907 -41867582 + MIR SINE MIR 8 226 -36 783 206 20 3 chr12 102415444 102415753 -41866736 + CT-rich Low_complexity Low_complexity 1 314 0 883 178 6 6 chr12 102415754 102415911 -41866578 - AluJb SINE Alu -36 276 120 1184 89 18 24 chr12 102415935 102416104 -41866385 + AluSx SINE Alu 1 168 -144 2289 66 13 7 chr12 102416241 102416543 -41865946 + AluY SINE Alu 1 304 -7 1982 133 0 72 chr12 102416578 102416910 -41865579 - AluSx SINE Alu -4 308 1 2522 41 3 28 chr12 102417033 102417351 -41865138 - AluY SINE Alu -1 310 1 26 0 0 0 chr12 102417531 102417557 -41864932 + AT_rich Low_complexity Low_complexity 1 26 0 825 138 17 0 chr12 102417557 102417673 -41864816 - FLAM_C SINE Alu -15 118 1 2456 74 7 3 chr12 102417683 102417992 -41864497 - AluY SINE Alu -1 310 1 1826 137 15 0 chr12 102417992 102418262 -41864227 - AluSx SINE Alu -12 300 27 203 146 24 0 chr12 102418311 102418352 -41864137 + (CAT)n Simple_repeat Simple_repeat 3 44 0 1133 160 0 76 chr12 102418367 102418617 -41863872 - AluJo SINE Alu 0 312 82 1957 149 0 7 chr12 102470216 102470525 -41811964 - AluJb SINE Alu -5 307 1 504 158 69 30 chr12 102470717 102470818 -41811671 + MER63 DNA MER1_type 2 732 -330 647 188 43 159 chr12 102470838 102470960 -41811529 - L1MEc LINE L1 -6116 280 164 270 26 0 0 chr12 102470960 102470999 -41811490 - AluY SINE Alu 0 300 262 647 188 43 159 chr12 102470999 102471115 -41811374 - L1MEc LINE L1 -6232 164 36 1865 151 27 0 chr12 102471156 102471454 -41811035 - AluJo SINE Alu -6 306 1 189 0 0 0 chr12 102471458 102471479 -41811010 + (T)n Simple_repeat Simple_repeat 1 21 0 346 214 22 11 chr12 102472046 102472135 -41810354 + MER67A LTR ERV1 452 541 -2 288 0 0 0 chr12 102472285 102472317 -41810172 + (A)n Simple_repeat Simple_repeat 1 32 0 2279 114 0 0 chr12 102472382 102472681 -41809808 + AluSx SINE Alu 1 299 -13 1306 115 0 0 chr12 102472903 102473086 -41809403 + AluSg/x SINE Alu 120 302 -10 635 87 78 10 chr12 102473096 102473199 -41809290 + L1MB5 LINE L1 6050 6159 -15 301 263 95 34 chr12 102473261 102473440 -41809049 - L1MC4a LINE L1 -1767 6041 5852 * 776 196 103 31 chr12 102473438 102473662 -41808827 - L1MC4 LINE L1 -460 7582 7343 394 264 33 33 chr12 102473680 102473801 -41808688 - L1MC4 LINE L1 -1197 6845 6725 381 308 76 22 chr12 102474317 102474502 -41807987 - MIR SINE MIR -62 200 6 1025 201 0 5 chr12 102474578 102474767 -41807722 - AluSg/x SINE Alu -20 292 105 2420 101 0 0 chr12 102474904 102475212 -41807277 - AluSg SINE Alu -2 308 1 265 250 31 10 chr12 102475461 102475557 -41806932 - L1ME4a LINE L1 -72 6049 5952 2269 113 0 7 chr12 102475667 102475969 -41806520 - AluSq SINE Alu -13 300 1 252 0 0 0 chr12 102476068 102476096 -41806393 + (T)n Simple_repeat Simple_repeat 1 28 0 6223 83 17 58 chr12 102476097 102477343 -41805146 - SVA Other Other -554 1383 433 681 112 200 32 chr12 102479371 102479496 -41802993 - AluJo SINE Alu -165 147 2 1834 163 3 7 chr12 102480242 102480531 -41801958 - AluSx SINE Alu -24 288 1 1280 274 76 42 chr12 102481512 102482135 -41800354 - L1ME3A LINE L1 -236 5926 5066 2410 50 7 0 chr12 102482135 102482445 -41800044 - AluY SINE Alu 0 312 1 1280 274 76 42 chr12 102482445 102482586 -41799903 - L1ME3A LINE L1 -1096 5066 4931 331 246 175 79 chr12 102483254 102483340 -41799149 + MER102b DNA MER1_type 33 109 -1319 1752 171 0 17 chr12 102483340 102483654 -41798835 + AluJb SINE Alu 1 309 0 331 246 175 79 chr12 102483654 102483846 -41798643 + MER102b DNA MER1_type 109 339 -2 2079 83 105 0 chr12 102484242 102484518 -41797971 + AluSq SINE Alu 1 305 -8 26 0 0 0 chr12 102484883 102484909 -41797580 + AT_rich Low_complexity Low_complexity 1 26 0 1276 120 0 0 chr12 102485894 102486061 -41796428 + AluSg/x SINE Alu 122 288 -22 354 327 19 0 chr12 102486111 102486215 -41796274 + MER91A DNA MER1_type 56 161 -35 729 219 112 0 chr12 102486278 102486483 -41796006 - MER20B DNA MER1_type -63 720 493 236 0 0 0 chr12 102486656 102486683 -41795806 - MER20B DNA MER1_type -537 246 220 198 0 0 0 chr12 102486768 102486790 -41795699 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1916 116 19 0 chr12 102486816 102487083 -41795406 - AluSx SINE Alu -40 272 1 1099 275 47 47 chr12 102487180 102487560 -41794929 + MLT1J LTR MaLR 58 440 -71 2261 153 68 12 chr12 102487560 102487960 -41794529 - MSTB LTR MaLR -2 424 3 1099 275 47 47 chr12 102487960 102488026 -41794463 + MLT1J LTR MaLR 439 504 -7 2245 125 3 0 chr12 102488412 102488716 -41793773 + AluSx SINE Alu 1 305 -7 2366 79 20 3 chr12 102489456 102489760 -41792729 + AluSg SINE Alu 1 309 -1 423 196 113 0 chr12 102489968 102490065 -41792424 - L2 LINE L2 0 3313 3206 196 269 63 57 chr12 102490193 102490368 -41792121 + L2 LINE L2 2386 2561 -753 2260 104 3 0 chr12 102490580 102490879 -41791610 + AluSc SINE Alu 1 300 -9 303 209 8 108 chr12 102491274 102491403 -41791086 + L1ME4a LINE L1 6005 6120 -1 25 75 0 0 chr12 102492480 102492533 -41789956 + GC_rich Low_complexity Low_complexity 1 53 0 790 174 79 0 chr12 102493909 102494087 -41788402 - L1MA8 LINE L1 -4 6287 6096 743 149 0 0 chr12 102494087 102494194 -41788295 - U6 snRNA snRNA 0 107 1 1175 138 10 25 chr12 102494893 102495089 -41787400 + AluJb SINE Alu 112 304 -8 298 329 133 7 chr12 102495448 102495591 -41786898 - L3 LINE CR1 -17 1560 1400 228 215 333 11 chr12 102496281 102496374 -41786115 + L2 LINE L2 3190 3312 -1 294 281 47 83 chr12 102496737 102496890 -41785599 - MIR SINE MIR 0 262 105 7469 53 18 34 chr12 102496890 102496923 -41785566 - SVA Other Other -683 1386 1354 287 49 24 0 chr12 102496923 102496964 -41785525 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7469 53 18 34 chr12 102496964 102498562 -41783927 - SVA Other Other -715 1354 54 324 0 0 0 chr12 102498562 102498598 -41783891 + (GGGAGA)n Simple_repeat Simple_repeat 4 39 0 294 281 47 83 chr12 102498598 102498633 -41783856 - MIR SINE MIR -155 107 78 9679 197 19 10 chr12 102498934 102500217 -41782272 + L1 LINE L1 3111 4381 -1765 243 0 0 0 chr12 102500217 102500244 -41782245 + (CA)n Simple_repeat Simple_repeat 2 28 0 9679 197 19 10 chr12 102500244 102500490 -41781999 + L1 LINE L1 4381 4623 -1523 1632 194 3 25 chr12 102500490 102500809 -41781680 + AluJo SINE Alu 1 312 0 9679 197 19 10 chr12 102500809 102501391 -41781098 + L1 LINE L1 4623 5242 -904 1100 248 36 65 chr12 102501509 102501880 -41780609 + MER77 LTR ERV1 256 673 -6 5045 218 32 24 chr12 102502055 102503371 -41779118 + L1ME1 LINE L1 3347 4673 -1473 724 189 8 15 chr12 102503373 102503505 -41778984 - LTR40a LTR ERVL -2 517 387 1958 220 62 25 chr12 102503506 102504024 -41778465 + L1ME1 LINE L1 5626 6162 -4 355 176 24 0 chr12 102504062 102504147 -41778342 + L2 LINE L2 1616 1702 -1612 2574 246 82 27 chr12 102504296 102505314 -41777175 + L2 LINE L2 1735 2865 -448 2112 153 10 35 chr12 102505314 102505713 -41776776 - Ricksha DNA DNA -18 3228 2840 601 124 16 91 chr12 102505708 102505829 -41776660 - Ricksha DNA DNA -1443 1803 1692 * 342 203 0 0 chr12 102505825 102505884 -41776605 - ERVL LTR ERVL -63 5701 5643 * 564 143 89 0 chr12 102505883 102505995 -41776494 - Ricksha DNA DNA -1920 126 5 793 293 165 18 chr12 102505995 102506106 -41776383 + L2 LINE L2 2850 2943 -370 511 118 53 0 chr12 102506106 102506182 -41776307 + MADE1 DNA Mariner 1 80 0 793 293 165 18 chr12 102506182 102506470 -41776019 + L2 LINE L2 2943 3308 -5 4765 137 21 42 chr12 102506678 102506791 -41775698 - L1MB5 LINE L1 -15 6159 6045 2139 129 0 3 chr12 102506791 102507094 -41775395 - AluSx SINE Alu -10 302 1 4765 137 21 42 chr12 102507094 102507846 -41774643 - L1MB5 LINE L1 -129 6045 5314 183 349 0 0 chr12 102507895 102507958 -41774531 + MIR3 SINE MIR 98 160 -48 1200 151 4 88 chr12 102507958 102508016 -41774473 - MER20 DNA MER1_type 0 219 158 1876 151 6 31 chr12 102508016 102508334 -41774155 - AluJb SINE Alu -2 310 1 1200 151 4 88 chr12 102508334 102508514 -41773975 - MER20 DNA MER1_type -61 158 1 257 321 24 57 chr12 102509359 102509568 -41772921 + L2 LINE L2 2909 3110 -162 1670 40 0 10 chr12 102509836 102510034 -41772455 - AluYb8 SINE Alu -122 196 1 3081 191 87 80 chr12 102510051 102510990 -41771499 - L1MC4 LINE L1 -638 7404 6459 2231 133 0 0 chr12 102512303 102512611 -41769878 - AluSx SINE Alu -4 308 1 369 236 230 7 chr12 102512721 102512869 -41769620 + MER5A DNA MER1_type 9 189 0 183 80 0 0 chr12 102512912 102512937 -41769552 + (T)n Simple_repeat Simple_repeat 1 25 0 869 148 0 8 chr12 102512970 102513092 -41769397 + FLAM_A SINE Alu 3 123 -10 201 377 28 28 chr12 102514670 102514776 -41767713 + MIR3 SINE MIR 58 163 -45 265 196 98 49 chr12 102514867 102514969 -41767520 + L1MC5 LINE L1 7826 7932 -29 1680 170 7 0 chr12 102514969 102515245 -41767244 + AluJo SINE Alu 35 312 0 964 210 17 0 chr12 102515284 102515465 -41767024 - MER5A DNA MER1_type -3 186 3 487 171 8 70 chr12 102516008 102516137 -41766352 + MER20 DNA MER1_type 88 208 -11 2028 126 7 17 chr12 102516445 102516747 -41765742 + AluSx SINE Alu 1 299 -13 201 308 266 7 chr12 102516910 102517053 -41765436 + MIR3 SINE MIR 8 187 -21 23 0 0 0 chr12 102517253 102517276 -41765213 + AT_rich Low_complexity Low_complexity 1 23 0 2902 83 8 6 chr12 102518414 102518775 -41763714 - THE1B LTR MaLR -2 362 1 5642 132 183 85 chr12 102520378 102521169 -41761320 + pTR5 LTR ERV1 276 988 -1450 2312 34 4 0 chr12 102521169 102521434 -41761055 - AluY SINE Alu -9 302 37 5642 132 183 85 chr12 102521434 102522067 -41760422 + pTR5 LTR ERV1 988 2295 -143 283 239 156 72 chr12 102522393 102522560 -41759929 + MER5A DNA MER1_type 9 189 0 227 310 112 26 chr12 102522568 102522684 -41759805 + L2 LINE L2 2870 2995 -277 21 36 0 0 chr12 102523495 102523523 -41758966 + AT_rich Low_complexity Low_complexity 1 28 0 259 310 138 7 chr12 102523566 102523711 -41758778 - MIR SINE MIR -1 261 98 * 518 206 0 96 chr12 102523708 102523844 -41758645 + L2 LINE L2 3190 3312 -1 257 241 149 0 chr12 102523842 102523929 -41758560 - MIR SINE MIR -161 101 2 * 1130 198 30 124 chr12 102524162 102524622 -41757867 + MER96B DNA MER1_type 1 417 0 348 199 42 58 chr12 102524863 102524990 -41757499 - L1ME LINE L1 -402 5719 5595 189 94 0 0 chr12 102525493 102525525 -41756964 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 2176 114 3 0 chr12 102525531 102525820 -41756669 - AluSq SINE Alu -23 290 1 1110 217 302 3 chr12 102526016 102526394 -41756095 - MLT1J LTR MaLR -16 495 5 574 256 13 103 chr12 102526440 102526623 -41755866 + L1MC4a LINE L1 5638 5785 -2023 1998 90 11 8 chr12 102526623 102526890 -41755599 - AluSx SINE Alu -44 268 1 574 256 13 103 chr12 102526890 102527007 -41755482 + L1MC4a LINE L1 5785 5911 -1897 1022 190 0 22 chr12 102527049 102527233 -41755256 - LTR40a LTR ERVL 0 519 340 24 67 0 0 chr12 102527550 102527595 -41754894 + AT_rich Low_complexity Low_complexity 1 45 0 731 200 33 0 chr12 102527598 102527718 -41754771 - FLAM_C SINE Alu -18 125 2 506 241 86 19 chr12 102527718 102527880 -41754609 - L1ME3A LINE L1 -296 5874 5702 267 284 118 24 chr12 102528232 102528359 -41754130 + MIR SINE MIR 103 241 -21 1335 235 209 24 chr12 102528370 102528915 -41753574 - L2 LINE L2 -366 2948 2303 229 360 66 15 chr12 102529054 102529251 -41753238 + MIR SINE MIR 6 212 -50 1911 152 3 7 chr12 102530211 102530508 -41751981 + AluJb SINE Alu 8 303 -9 243 0 0 0 chr12 102531273 102531300 -41751189 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 357 170 100 50 chr12 102531764 102531864 -41750625 + MER104 DNA Tc2 6 110 -70 614 216 64 0 chr12 102531916 102532041 -41750448 + FLAM_A SINE Alu 1 133 0 2288 117 0 3 chr12 102532169 102532476 -41750013 - AluSq SINE Alu -7 306 1 241 291 106 14 chr12 102533505 102533686 -41748803 + MIR SINE MIR 11 256 -6 2402 99 0 0 chr12 102533723 102534027 -41748462 - AluSg SINE Alu -6 304 1 2389 91 0 3 chr12 102534027 102534333 -41748156 - AluSq SINE Alu -7 306 1 2288 190 33 0 chr12 102534990 102535385 -41747104 - MSTB1 LTR MaLR 0 432 25 1827 103 0 8 chr12 102535538 102535820 -41746669 - AluSc SINE Alu 0 309 45 247 173 37 25 chr12 102535885 102535966 -41746523 + (TTTA)n Simple_repeat Simple_repeat 3 84 0 1698 168 24 10 chr12 102536026 102536318 -41746171 + AluJb SINE Alu 5 300 -12 431 139 0 13 chr12 102536320 102536399 -41746090 + (GGGA)n Simple_repeat Simple_repeat 3 80 0 310 97 0 32 chr12 102536438 102536500 -41745989 + (GGGAA)n Simple_repeat Simple_repeat 2 61 0 2198 87 49 3 chr12 102536936 102537222 -41745267 + AluSg SINE Alu 3 301 -9 201 180 146 90 chr12 102537684 102537773 -41744716 - MIR SINE MIR -6 256 163 465 289 55 15 chr12 102537807 102538008 -41744481 - LTR40b LTR ERVL -50 412 204 782 191 0 16 chr12 102538220 102538346 -41744143 + FLAM_A SINE Alu 2 125 -8 358 189 264 19 chr12 102538352 102538458 -41744031 - MIR SINE MIR -96 166 35 2095 184 121 98 chr12 102538481 102539111 -41743378 + LTR48B LTR ERV1 1 644 0 450 260 71 56 chr12 102539566 102539762 -41742727 + MIR SINE MIR 57 255 -7 720 250 184 17 chr12 102540075 102540373 -41742116 + L1ME4a LINE L1 5573 5820 -301 1761 169 0 43 chr12 102540373 102540698 -41741791 + AluSx SINE Alu 1 311 -1 720 250 184 17 chr12 102540698 102540867 -41741622 + L1ME4a LINE L1 5820 6118 -3 1872 154 0 13 chr12 102540926 102541225 -41741264 + AluJo SINE Alu 1 295 -17 769 114 12 3 chr12 102541422 102541592 -41740897 + MER51A LTR ERV1 1 224 -410 * 1291 119 52 24 chr12 102541588 102541798 -41740691 + MER51A LTR ERV1 419 634 0 456 287 126 58 chr12 102543649 102544161 -41738328 - L2 LINE L2 -166 3147 2610 1658 168 33 4 chr12 102544759 102545033 -41737456 - AluJo SINE Alu -30 282 1 180 0 0 0 chr12 102545036 102545056 -41737433 + (T)n Simple_repeat Simple_repeat 1 20 0 4013 193 60 21 chr12 102546054 102546568 -41735921 - L1MD1 LINE L1 -110 6132 5639 2215 125 3 3 chr12 102546568 102546880 -41735609 - AluSx SINE Alu 0 312 1 4013 193 60 21 chr12 102546880 102547697 -41734792 - L1MD1 LINE L1 -603 5639 4749 2981 222 53 30 chr12 102548656 102548825 -41733664 - L1MD1 LINE L1 -1390 4756 4592 1779 187 107 46 chr12 102548825 102549263 -41733226 + MLT1C LTR MaLR 3 467 0 2981 222 53 30 chr12 102549263 102549926 -41732563 - L1MD1 LINE L1 -1554 4592 3905 217 231 149 152 chr12 102549992 102550321 -41732168 - L2 LINE L2 0 3272 2945 1159 311 59 47 chr12 102550462 102551119 -41731370 - L2 LINE L2 -557 2757 2093 195 336 86 48 chr12 102551196 102551616 -41730873 + L2 LINE L2 2227 2662 -652 185 83 28 0 chr12 102552516 102552552 -41729937 + (TA)n Simple_repeat Simple_repeat 2 38 0 2518 153 63 9 chr12 102552789 102553107 -41729382 - L1MB2 LINE L1 -7 6164 5812 2230 106 10 0 chr12 102553107 102553409 -41729080 - AluSq SINE Alu -8 305 1 2518 153 63 9 chr12 102553409 102553547 -41728942 - L1MB2 LINE L1 -359 5812 5683 226 293 85 12 chr12 102553815 102553897 -41728592 - L3 LINE CR1 -506 1071 984 415 270 84 46 chr12 102554991 102555426 -41727063 - MLT1J LTR MaLR -24 580 3 225 174 165 87 chr12 102555827 102555855 -41726634 + L1ME4a LINE L1 5893 5917 -204 1644 183 7 13 chr12 102555855 102556161 -41726328 - AluJb SINE Alu -8 304 1 225 174 165 87 chr12 102556161 102556247 -41726242 + L1ME4a LINE L1 5917 6016 -105 1536 123 5 0 chr12 102556899 102557103 -41725386 + AluSx SINE Alu 1 205 -107 252 293 80 0 chr12 102557387 102557462 -41725027 - MIR3 SINE MIR -13 195 115 1952 96 0 4 chr12 102558120 102558524 -41723965 + AluSq SINE Alu 38 440 0 2273 106 0 10 chr12 102559446 102559748 -41722741 - AluSx SINE Alu -13 299 1 500 306 158 22 chr12 102559799 102560021 -41722468 - MIR SINE MIR -3 259 8 2635 99 65 0 chr12 102560086 102560440 -41722049 + MER51B LTR ERV1 1 377 0 2201 114 3 13 chr12 102560516 102560823 -41721666 - AluSq SINE Alu -9 304 1 1548 257 112 37 chr12 102560842 102561759 -41720730 - L1ME4a LINE L1 -275 5829 2576 963 267 62 23 chr12 102562995 102563478 -41719011 - L1M4 LINE L1 -1537 4609 4108 354 226 89 24 chr12 102563494 102563618 -41718871 - L1ME4a LINE L1 -5975 144 13 24 0 0 0 chr12 102563831 102563855 -41718634 + AT_rich Low_complexity Low_complexity 1 24 0 343 298 105 9 chr12 102563942 102564056 -41718433 - MER91C DNA MER1_type -15 125 1 219 288 25 0 chr12 102564431 102564511 -41717978 + (ATG)n Simple_repeat Simple_repeat 2 83 0 456 19 0 0 chr12 102564896 102564949 -41717540 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 206 196 0 39 chr12 102565382 102565433 -41717056 + L2 LINE L2 3264 3312 -1 1590 171 80 30 chr12 102565957 102566296 -41716193 + MLT1A1 LTR MaLR 1 356 -9 2235 111 20 0 chr12 102566478 102566775 -41715714 - AluSg SINE Alu -7 303 1 493 277 46 0 chr12 102566946 102567076 -41715413 + MIR SINE MIR 127 262 0 792 247 55 43 chr12 102567352 102567524 -41714965 + MIR SINE MIR 2 179 -83 1831 129 144 21 chr12 102567524 102567905 -41714584 - MSTA LTR MaLR 0 428 1 792 247 55 43 chr12 102567905 102567987 -41714502 + MIR SINE MIR 179 259 -3 180 147 15 44 chr12 102568210 102568278 -41714211 + (TATTG)n Simple_repeat Simple_repeat 4 69 0 23 54 0 0 chr12 102568524 102568561 -41713928 + AT_rich Low_complexity Low_complexity 1 37 0 1962 129 69 9 chr12 102568840 102569158 -41713331 - MER1B DNA MER1_type 0 337 1 1467 70 0 15 chr12 102569527 102569727 -41712762 - L1PA8 LINE L1 -8 6164 5968 24 32 0 0 chr12 102569863 102569894 -41712595 + AT_rich Low_complexity Low_complexity 1 31 0 1012 71 0 93 chr12 102570252 102570435 -41712054 + MER30 DNA MER1_type 1 166 -64 1435 181 32 8 chr12 102570846 102571094 -41711395 + AluJo SINE Alu 1 254 -58 1090 111 14 0 chr12 102571536 102571680 -41710809 + AluSc SINE Alu 1 146 -163 2160 128 0 0 chr12 102571805 102572102 -41710387 - AluSx SINE Alu -15 297 1 380 208 87 29 chr12 102572116 102572289 -41710200 - L1M4 LINE L1 -1082 5064 4882 1440 189 53 11 chr12 102572333 102572618 -41709871 + AluJo SINE Alu 1 297 -15 393 236 8 81 chr12 102572884 102573007 -41709482 + MER81 DNA DNA 1 114 0 286 314 211 5 chr12 102573099 102573284 -41709205 - MIR SINE MIR -6 256 34 1877 130 9 48 chr12 102573417 102573732 -41708757 - AluJb SINE Alu -9 303 1 256 278 41 0 chr12 102574180 102574277 -41708212 + MER103 DNA DNA 48 148 -18 423 244 42 17 chr12 102574810 102574929 -41707560 + MER5B DNA MER1_type 1 122 -56 6094 43 36 1 chr12 102574930 102575726 -41706763 - L1PA6 LINE L1 -2 6152 5329 261 209 45 45 chr12 102575726 102575793 -41706696 - MER5B DNA MER1_type -111 67 1 566 291 18 24 chr12 102576713 102576878 -41705611 - MIR SINE MIR -97 165 2 514 309 99 5 chr12 102577290 102577491 -41704998 + MIR SINE MIR 21 240 -22 191 259 17 52 chr12 102577575 102577633 -41704856 - L2 LINE L2 -78 3235 3180 1959 168 3 0 chr12 102577923 102578232 -41704257 + AluJo SINE Alu 2 311 -1 324 240 90 0 chr12 102578763 102578863 -41703626 - L1ME4a LINE L1 -39 6082 5974 254 233 71 49 chr12 102579112 102579237 -41703252 - MIR SINE MIR -92 116 19 251 347 0 0 chr12 102579286 102579358 -41703131 - L2 LINE L2 -6 3266 3195 2236 111 0 0 chr12 102579358 102579647 -41702842 + AluSg SINE Alu 1 289 -21 2248 80 4 0 chr12 102579733 102580042 -41702447 + AluSg1 SINE Alu 4 313 0 345 318 97 71 chr12 102580042 102580309 -41702180 - L2 LINE L2 -68 3204 2931 432 258 302 0 chr12 102581119 102581278 -41701211 + MIR SINE MIR 55 261 -1 27 73 0 0 chr12 102581360 102581415 -41701074 + AT_rich Low_complexity Low_complexity 1 55 0 2183 95 11 0 chr12 102581919 102582203 -41700286 + AluSx SINE Alu 1 287 -25 642 79 0 0 chr12 102582204 102582293 -41700196 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 301 311 39 0 chr12 102582293 102582396 -41700093 - MIR3 SINE MIR -10 198 92 1042 122 5 108 chr12 102583307 102583529 -41698960 + MER20 DNA MER1_type 1 199 -20 713 108 31 8 chr12 102583530 102583660 -41698829 + L1MB3 LINE L1 6050 6182 -1 246 238 32 0 chr12 102583927 102583990 -41698499 + MLT1K LTR MaLR 517 581 -7 3155 70 63 2 chr12 102584145 102584572 -41697917 - MLT2A2 LTR ERVL 0 453 1 741 222 41 6 chr12 102585324 102585495 -41696994 - MER5B DNA MER1_type 0 178 2 661 277 40 7 chr12 102585533 102585833 -41696656 + L1ME LINE L1 5255 5564 -606 2063 139 0 0 chr12 102585846 102586133 -41696356 - AluSx SINE Alu -20 292 6 2081 144 57 85 chr12 102586140 102586613 -41695876 + MLT2C2 LTR ERVL 5 464 0 403 240 19 0 chr12 102587159 102587263 -41695226 - L1MD3 LINE L1 -488 7507 7402 31 26 0 0 chr12 102587277 102587315 -41695174 + AT_rich Low_complexity Low_complexity 1 38 0 186 297 126 18 chr12 102587538 102587649 -41694840 + L2 LINE L2 3171 3293 -20 233 303 67 22 chr12 102588329 102588418 -41694071 - L3 LINE CR1 -466 1111 1019 215 299 143 0 chr12 102588423 102588570 -41693919 - L2 LINE L2 0 3313 3146 309 306 0 0 chr12 102588570 102588655 -41693834 - L1MC4 LINE L1 -1341 6701 6617 530 288 184 66 chr12 102588666 102589031 -41693458 - L3 LINE CR1 -156 1421 1014 363 277 45 39 chr12 102589031 102589186 -41693303 - L2 LINE L2 0 3313 3158 2113 107 7 10 chr12 102589187 102589476 -41693013 + AluSx SINE Alu 1 288 -24 22 0 0 0 chr12 102589476 102589498 -41692991 + AT_rich Low_complexity Low_complexity 1 22 0 424 299 50 41 chr12 102590014 102590235 -41692254 - MIR SINE MIR 0 262 34 22 35 0 0 chr12 102590333 102590362 -41692127 + AT_rich Low_complexity Low_complexity 1 29 0 189 372 85 23 chr12 102590742 102590871 -41691618 + L2 LINE L2 3093 3229 -43 181 271 62 0 chr12 102591771 102591819 -41690670 + MIR SINE MIR 117 167 -95 246 287 9 70 chr12 102592596 102592711 -41689778 + MER5A DNA MER1_type 80 187 -2 423 0 0 0 chr12 102593004 102593051 -41689438 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1846 136 7 48 chr12 102593082 102593391 -41689098 - AluJb SINE Alu -16 296 1 2171 117 0 0 chr12 102593528 102593827 -41688662 + AluSx SINE Alu 1 299 -13 197 347 0 53 chr12 102594488 102594583 -41687906 - MIR3 SINE MIR -10 198 109 333 0 0 0 chr12 102594735 102594772 -41687717 + (TG)n Simple_repeat Simple_repeat 2 38 0 374 333 133 0 chr12 102595059 102595209 -41687280 - L2 LINE L2 -1 3271 3102 319 276 132 15 chr12 102595599 102595864 -41686625 - L1ME4a LINE L1 -20 6101 5806 741 232 38 39 chr12 102596570 102596996 -41685493 - MLT1J LTR MaLR -23 488 1 6480 129 23 2 chr12 102597039 102598630 -41683859 - L1MA3 LINE L1 -29 6276 4647 21 0 0 0 chr12 102598989 102599010 -41683479 + AT_rich Low_complexity Low_complexity 1 21 0 408 291 58 23 chr12 102599048 102599220 -41683269 - MIR SINE MIR -51 211 34 41 21 0 0 chr12 102599571 102599619 -41682870 + AT_rich Low_complexity Low_complexity 1 48 0 1973 156 10 0 chr12 102599651 102599952 -41682537 - AluSx SINE Alu -8 304 1 1317 146 92 85 chr12 102600359 102600687 -41681802 + AluJb SINE Alu 1 330 0 209 254 270 0 chr12 102601662 102601725 -41680764 - MIR3 SINE MIR -3 205 126 374 296 44 25 chr12 102601725 102601884 -41680605 - MIR3 SINE MIR -41 167 6 2248 95 0 3 chr12 102602168 102602488 -41680001 - AluSg SINE Alu 0 319 1 22 35 0 0 chr12 102603771 102603800 -41678689 + AT_rich Low_complexity Low_complexity 1 29 0 2272 101 0 0 chr12 102603851 102604139 -41678350 + AluSx SINE Alu 1 288 -24 1063 130 50 0 chr12 102604147 102604347 -41678142 - L1MA8 LINE L1 -1 6290 6081 27 29 0 0 chr12 102604357 102604391 -41678098 + AT_rich Low_complexity Low_complexity 1 34 0 486 269 66 39 chr12 102604658 102604840 -41677649 + MIR SINE MIR 1 187 -75 2468 93 3 0 chr12 102604854 102605166 -41677323 + AluSp SINE Alu 1 313 0 1035 147 6 0 chr12 102605496 102605652 -41676837 - FRAM SINE Alu -20 156 1 1407 87 6 0 chr12 102605869 102606052 -41676437 - AluSg/x SINE Alu -6 304 121 3263 158 43 61 chr12 102606374 102607000 -41675489 - L1MB3 LINE L1 -1 6179 5610 1662 146 22 19 chr12 102607000 102607267 -41675222 + AluJb SINE Alu 1 268 -44 3263 158 43 61 chr12 102607267 102607583 -41674906 - L1MB3 LINE L1 -570 5610 5290 727 107 33 8 chr12 102607849 102607971 -41674518 + L1MB7 LINE L1 6043 6167 -17 1120 258 204 2 chr12 102608097 102608534 -41673955 - L2 LINE L2 0 3313 2782 1554 193 33 27 chr12 102609192 102609492 -41672997 + AluJo SINE Alu 3 304 -8 33 90 0 0 chr12 102610422 102610511 -41671978 + AT_rich Low_complexity Low_complexity 1 89 0 264 218 238 30 chr12 102612484 102612585 -41669904 - MER20B DNA MER1_type -604 179 58 23 0 0 0 chr12 102612897 102612920 -41669569 + AT_rich Low_complexity Low_complexity 1 23 0 287 351 53 18 chr12 102613393 102613507 -41668982 + MIR3 SINE MIR 38 155 -53 1967 118 0 0 chr12 102614389 102614652 -41667837 - AluSg SINE Alu -10 300 38 304 210 37 25 chr12 102614719 102614800 -41667689 - L1ME3A LINE L1 0 6170 6089 595 257 109 10 chr12 102615417 102615619 -41666870 - MIR SINE MIR -8 254 33 1345 177 154 3 chr12 102615756 102616055 -41666434 - MER2 DNA MER2_type 0 344 1 202 149 170 0 chr12 102616209 102616256 -41666233 + MIR SINE MIR 143 197 -65 1869 119 0 0 chr12 102617137 102617398 -41665091 - AluSx SINE Alu -7 305 45 302 255 112 10 chr12 102617804 102617902 -41664587 + L2 LINE L2 3204 3311 -2 201 271 0 0 chr12 102619417 102619465 -41663024 + L3 LINE CR1 1528 1575 -2 972 224 90 24 chr12 102619612 102619947 -41662542 + L1ME3A LINE L1 5810 6166 -4 229 33 0 0 chr12 102620087 102620117 -41662372 + L1MA9 LINE L1 6282 6311 -1 2273 162 21 2 chr12 102620575 102621007 -41661482 + L1MB2 LINE L1 5705 6144 -27 641 112 60 22 chr12 102621012 102621146 -41661343 + L1MB4 LINE L1 6042 6180 0 5148 62 17 1 chr12 102621408 102622058 -41660431 + PABL_A LTR ERV1 1 660 0 257 315 154 8 chr12 102622161 102622291 -41660198 - L2 LINE L2 -2 3270 3122 266 264 22 33 chr12 102623208 102623299 -41659190 - MER5B DNA MER1_type 0 178 89 973 270 100 23 chr12 102624740 102625828 -41656661 - L1ME LINE L1 -520 5644 4459 225 94 0 0 chr12 102626029 102626061 -41656428 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 1112 270 116 37 chr12 102626081 102626826 -41655663 + L2 LINE L2 2484 3300 -13 273 98 0 0 chr12 102626826 102626867 -41655622 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2794 154 56 2 chr12 102626930 102627409 -41655080 + MLT1D LTR MaLR 1 505 0 1662 179 27 53 chr12 102627756 102628170 -41654319 + MLT1C LTR MaLR 53 455 -12 1108 231 119 42 chr12 102628261 102628689 -41653800 + MLT1C LTR MaLR 7 467 0 40872 32 23 1 chr12 102628850 102634870 -41647619 + L1PA3 LINE L1 1 6151 -4 2111 159 132 28 chr12 102635085 102635556 -41646933 - MLT2B1 LTR ERVL 0 520 1 1637 207 59 43 chr12 102635701 102636193 -41646296 + LTR53 LTR ERVL 8 507 -12 415 290 28 9 chr12 102636391 102636498 -41645991 + MER5B DNA MER1_type 1 109 -69 1711 133 62 91 chr12 102636702 102637086 -41645403 + THE1C LTR MaLR 3 375 0 2313 103 6 0 chr12 102637249 102637560 -41644929 - AluSp SINE Alu 0 313 1 2812 180 13 18 chr12 102637615 102637952 -41644537 - L1MB8 LINE L1 -94 6084 5750 2682 102 6 6 chr12 102637952 102638316 -41644173 - THE1B LTR MaLR 0 364 1 2812 180 13 18 chr12 102638316 102638584 -41643905 - L1MB8 LINE L1 -428 5750 5482 2940 103 14 18 chr12 102638875 102639311 -41643178 + MER57B LTR ERV1 1 434 0 385 240 156 7 chr12 102639787 102639941 -41642548 + MER104 DNA Tc2 1 177 -3 1990 134 20 0 chr12 102640519 102640817 -41641672 - AluSx SINE Alu -8 304 1 354 107 0 0 chr12 102641976 102642032 -41640457 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 665 244 66 78 chr12 102643476 102644024 -41638465 + L1MC5 LINE L1 7357 7897 -64 1860 156 3 3 chr12 102644055 102644362 -41638127 - AluSx SINE Alu 0 307 1 286 330 30 3 chr12 102644782 102645017 -41637472 - MLT1I LTR MaLR -16 422 124 404 246 35 35 chr12 102645138 102645252 -41637237 - MIR SINE MIR -114 148 35 1905 147 3 29 chr12 102645312 102645626 -41636863 - AluJb SINE Alu -6 306 1 1222 118 0 5 chr12 102645639 102645834 -41636655 - L1MA5 LINE L1 -3 6297 6104 426 273 42 36 chr12 102695837 102696002 -41586487 + MIR SINE MIR 64 229 -33 2006 130 27 3 chr12 102697488 102697780 -41584709 - AluSx SINE Alu -13 299 1 2222 119 0 0 chr12 102699126 102699428 -41583061 + AluSx SINE Alu 1 302 -10 272 213 54 86 chr12 102699704 102699841 -41582648 + MIR SINE MIR 23 156 -52 530 184 113 0 chr12 102700622 102700768 -41581721 + MIR SINE MIR 73 233 -29 2052 121 18 0 chr12 102701333 102701614 -41580875 + AluSx SINE Alu 1 286 -26 207 0 0 0 chr12 102701645 102701668 -41580821 + (A)n Simple_repeat Simple_repeat 1 23 0 889 134 0 8 chr12 102702219 102702353 -41580136 - FLAM_C SINE Alu 0 133 1 1874 134 3 61 chr12 102703733 102704046 -41578443 - AluJb SINE Alu -16 296 2 1258 163 41 29 chr12 102705199 102705445 -41577044 - AluJo SINE Alu -6 306 58 266 331 93 0 chr12 102705593 102705732 -41576757 - L2 LINE L2 -508 2806 2655 269 286 39 0 chr12 102706263 102706340 -41576149 + MIR SINE MIR 112 191 -71 278 330 9 17 chr12 102706743 102706848 -41575641 + GA-rich Low_complexity Low_complexity 4 109 -8 2052 147 0 0 chr12 102706848 102707148 -41575341 + AluJb SINE Alu 1 300 -12 201 39 0 0 chr12 102707267 102707293 -41575196 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 208 233 82 14 chr12 102708273 102708346 -41574143 + MER5A DNA MER1_type 42 119 -70 1937 135 24 3 chr12 102710422 102710710 -41571779 - AluSx SINE Alu -18 294 1 344 270 77 14 chr12 102711383 102711532 -41570957 + MIR SINE MIR 35 187 -75 181 175 0 25 chr12 102712065 102712105 -41570384 - L2 LINE L2 0 3313 3275 834 246 0 44 chr12 102712723 102712951 -41569538 + MIR SINE MIR 45 262 0 538 202 19 19 chr12 102713794 102713898 -41568591 + FRAM SINE Alu 54 157 -19 396 287 57 0 chr12 102714150 102714272 -41568217 - L2 LINE L2 -1 3312 3184 757 275 123 8 chr12 102714295 102714531 -41567958 + MLT1G LTR MaLR 226 488 -102 317 357 16 8 chr12 102714532 102714658 -41567831 + L2 LINE L2 2960 3086 -186 1598 127 22 0 chr12 102715162 102715411 -41567078 + AluJo SINE Alu 48 301 0 2130 107 20 7 chr12 102716322 102716620 -41565869 - AluSx SINE Alu -8 304 3 182 209 22 44 chr12 102717163 102717254 -41565235 + GA-rich Low_complexity Low_complexity 2 90 0 21 0 0 0 chr12 102717593 102717614 -41564875 + AT_rich Low_complexity Low_complexity 1 21 0 2273 92 0 32 chr12 102717862 102718177 -41564312 - AluSg SINE Alu -5 305 1 314 102 0 0 chr12 102718343 102718392 -41564097 + MADE1 DNA Mariner 32 80 0 2270 97 7 0 chr12 102721778 102722068 -41560421 - AluSq SINE Alu -21 292 1 195 354 131 23 chr12 102722079 102722209 -41560280 + L2 LINE L2 3129 3272 0 22 35 0 0 chr12 102722797 102722826 -41559663 + AT_rich Low_complexity Low_complexity 1 29 0 1736 97 97 4 chr12 102723944 102724222 -41558267 + L1PA16 LINE L1 5854 6157 -9 1683 164 17 24 chr12 102724655 102724942 -41557547 + AluJb SINE Alu 1 285 -27 265 256 67 44 chr12 102725472 102725562 -41556927 - L2 LINE L2 -24 3289 3198 201 274 81 32 chr12 102725577 102725639 -41556850 - L2 LINE L2 0 3272 3208 591 320 154 13 chr12 102726300 102726913 -41555576 - L2 LINE L2 -71 3242 2535 1855 172 3 0 chr12 102728450 102728752 -41553737 + AluJb SINE Alu 1 303 -9 497 245 123 13 chr12 102728772 102728927 -41553562 + MIR SINE MIR 41 212 -50 537 148 74 0 chr12 102729419 102729527 -41552962 - L1MA7 LINE L1 -3 6288 6173 301 272 44 68 chr12 102730264 102730558 -41551931 + L1ME4a LINE L1 5739 6025 -96 23 0 0 0 chr12 102731718 102731741 -41550748 + AT_rich Low_complexity Low_complexity 1 23 0 2102 104 52 0 chr12 102732052 102732341 -41550148 + AluSx SINE Alu 1 304 -8 1851 145 35 7 chr12 102732349 102732638 -41549851 + AluJb SINE Alu 1 297 -15 2201 105 7 3 chr12 102732639 102732934 -41549555 + AluSx SINE Alu 1 296 -16 2150 127 3 0 chr12 102734289 102734588 -41547901 + AluSg SINE Alu 1 300 -10 2482 64 0 29 chr12 102735606 102735919 -41546570 - AluY SINE Alu -6 305 2 1933 138 7 16 chr12 102735920 102736225 -41546264 - AluJo SINE Alu -10 302 1 1777 143 3 28 chr12 102736311 102736632 -41545857 + L1MB2 LINE L1 5815 6127 -44 327 252 115 22 chr12 102736717 102736856 -41545633 - MIR SINE MIR -27 235 84 360 94 0 0 chr12 102737687 102737740 -41544749 + (CA)n Simple_repeat Simple_repeat 2 54 0 332 231 14 14 chr12 102738398 102738541 -41543948 + (TA)n Simple_repeat Simple_repeat 2 144 0 486 249 143 26 chr12 102738625 102738814 -41543675 + MIR SINE MIR 18 228 -34 735 152 0 0 chr12 102739404 102739516 -41542973 - FLAM_A SINE Alu -11 131 20 2366 79 0 19 chr12 102739937 102740252 -41542237 - AluY SINE Alu -2 309 1 2442 81 3 0 chr12 102740690 102740988 -41541501 - AluSp SINE Alu -14 299 1 280 264 36 18 chr12 102741187 102741297 -41541192 - MER103 DNA DNA -12 154 43 1988 146 14 0 chr12 102741569 102741864 -41540625 + AluJo SINE Alu 1 299 -13 239 275 110 11 chr12 102742702 102742793 -41539696 + MIR SINE MIR 157 256 -6 224 300 12 50 chr12 102743157 102743237 -41539252 - L2 LINE L2 -5 3267 3191 1085 164 224 0 chr12 102743950 102744213 -41538276 + MER5C DNA MER1_type 3 324 0 545 229 72 7 chr12 102744221 102744371 -41538118 + MIR SINE MIR 20 170 -62 290 280 159 0 chr12 102744537 102744644 -41537845 + MIR SINE MIR 90 213 -49 24 32 0 0 chr12 102744985 102745016 -41537473 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 102745207 102745228 -41537261 + AT_rich Low_complexity Low_complexity 1 21 0 262 344 89 48 chr12 102746184 102746579 -41535910 + L2 LINE L2 2032 2442 -872 206 342 161 32 chr12 102747165 102747320 -41535169 + L2 LINE L2 3080 3254 -18 22 0 0 0 chr12 102747802 102747824 -41534665 + AT_rich Low_complexity Low_complexity 1 22 0 362 259 93 65 chr12 102748453 102748592 -41533897 - L2 LINE L2 -2 3270 3128 1522 70 14 23 chr12 102748917 102749131 -41533358 + L1PA13 LINE L1 5936 6147 -16 26 0 0 0 chr12 102749235 102749261 -41533228 + AT_rich Low_complexity Low_complexity 1 26 0 2131 43 4 0 chr12 102749579 102749837 -41532652 - L1PA7 LINE L1 0 6154 5896 645 13 0 0 chr12 102752041 102752116 -41530373 + tRNA-Asp-GAC tRNA tRNA 1 75 0 411 301 209 58 chr12 102752439 102752768 -41529721 - L2 LINE L2 -536 2778 2500 1867 162 138 0 chr12 102752768 102753144 -41529345 - MSTA LTR MaLR 0 428 1 411 301 209 58 chr12 102753144 102753713 -41528776 - L2 LINE L2 -814 2500 1708 2256 57 30 20 chr12 102753713 102754010 -41528479 - AluY SINE Alu -11 300 1 411 301 209 58 chr12 102754010 102754117 -41528372 - L2 LINE L2 -1606 1708 1619 1722 144 12 0 chr12 102754436 102754693 -41527796 - AluJb SINE Alu -46 266 7 746 175 0 0 chr12 102755123 102755243 -41527246 + AluJb SINE Alu 1 120 -192 186 43 0 0 chr12 102755243 102755266 -41527223 + (TAA)n Simple_repeat Simple_repeat 2 24 0 345 326 189 11 chr12 102755383 102755558 -41526931 + MIR SINE MIR 56 261 -1 1394 253 68 50 chr12 102756348 102756847 -41525642 + MLT1J LTR MaLR 3 510 -1 200 277 123 0 chr12 102756962 102757027 -41525462 + L2 LINE L2 2685 2757 -557 319 118 29 0 chr12 102757518 102757586 -41524903 + L1MA6 LINE L1 6231 6300 0 2383 66 0 0 chr12 102757675 102757961 -41524528 - AluY SINE Alu -25 286 1 1648 175 7 7 chr12 102757992 102758184 -41524305 - AluJb SINE Alu 0 312 118 198 0 0 0 chr12 102758184 102758206 -41524283 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 1648 175 7 7 chr12 102758206 102758305 -41524184 - AluJb SINE Alu -193 119 21 3523 59 172 45 chr12 102758305 102758882 -41523607 + PABL_A LTR ERV1 11 660 0 238 241 69 0 chr12 102758882 102758915 -41523574 - AluJ/FLAM SINE Alu -264 38 2 1220 45 13 6 chr12 102759498 102759655 -41522834 + AluY SINE Alu 153 310 -1 1396 230 33 102 chr12 102759695 102760041 -41522448 - L2 LINE L2 -647 2667 2363 812 137 0 8 chr12 102760041 102760165 -41522324 - FLAM_C SINE Alu -9 124 2 1396 230 33 102 chr12 102760165 102760309 -41522180 - L2 LINE L2 -951 2363 2211 304 271 21 0 chr12 102760309 102760405 -41522084 - L2 LINE L2 -1207 2107 2010 2218 125 0 0 chr12 102761251 102761555 -41520934 + AluSc SINE Alu 1 304 -5 331 198 27 108 chr12 102761857 102761929 -41520560 + MER5A DNA MER1_type 5 66 -123 1497 113 38 151 chr12 102761929 102762273 -41520216 + AluYb8 SINE Alu 1 305 -3 331 198 27 108 chr12 102762273 102762311 -41520178 + MER5A DNA MER1_type 66 106 -83 1654 233 18 39 chr12 102762840 102763347 -41519142 - L1ME3A LINE L1 -8 6162 5667 212 31 62 0 chr12 102764393 102764425 -41518064 + (TATG)n Simple_repeat Simple_repeat 3 36 0 2909 208 40 5 chr12 102764443 102765074 -41517415 - MER82 DNA MER2_type 0 653 1 231 258 0 15 chr12 102765248 102765314 -41517175 + GA-rich Low_complexity Low_complexity 3 67 0 353 264 55 59 chr12 102766002 102766222 -41516267 - Charlie7 DNA MER1_type -1938 674 456 2445 134 30 28 chr12 102766297 102766731 -41515758 + L1PA16 LINE L1 5718 6152 -14 3159 204 191 122 chr12 102766877 102767436 -41515053 + MLT1A2-int LTR MaLR 33 552 -1183 890 158 0 27 chr12 102767436 102767582 -41514907 + FLAM_C SINE Alu 1 142 -1 3159 204 191 122 chr12 102767582 102768470 -41514019 + MLT1A2-int LTR MaLR 552 1735 0 1846 208 22 19 chr12 102768473 102768843 -41513646 + MLT1A2 LTR MaLR 4 374 0 2060 132 99 6 chr12 102769286 102769620 -41512869 + MLT1A1 LTR MaLR 1 365 0 533 273 21 7 chr12 102769811 102769954 -41512535 - MLT1F LTR MaLR -396 146 2 399 298 50 7 chr12 102769962 102770103 -41512386 - MIR SINE MIR -112 150 4 784 228 109 24 chr12 102770817 102771028 -41511461 - MIR SINE MIR -18 244 16 2406 113 22 84 chr12 102771060 102771095 -41511394 - MSTA LTR MaLR -4 424 388 2245 93 3 0 chr12 102771095 102771395 -41511094 + AluSg1 SINE Alu 2 302 -7 2326 86 7 0 chr12 102771395 102771699 -41510790 + AluSg SINE Alu 1 306 -4 2406 113 22 84 chr12 102771396 102771734 -41510755 - MSTA LTR MaLR -40 388 402 2235 86 0 13 chr12 102771734 102772047 -41510442 + AluY SINE Alu 1 309 -2 2406 113 22 84 chr12 102772047 102772426 -41510063 - MSTA LTR MaLR -25 403 2 234 285 18 97 chr12 102772448 102772613 -41509876 + L2 LINE L2 2925 3076 -196 966 230 95 36 chr12 102772722 102773084 -41509405 + MER57A LTR ERV1 43 403 0 669 272 191 50 chr12 102773133 102773537 -41508952 + MLT1K LTR MaLR 126 586 -2 25 0 0 0 chr12 102774465 102774490 -41507999 + AT_rich Low_complexity Low_complexity 1 25 0 2178 116 0 0 chr12 102774610 102774911 -41507578 - AluSq SINE Alu -12 301 1 1469 158 28 112 chr12 102774920 102775243 -41507246 - AluJo SINE Alu -6 296 1 1493 228 71 113 chr12 102776535 102777313 -41505176 - LTR1B LTR ERV1 -81 745 1 181 200 0 0 chr12 102777408 102777443 -41505046 + L2 LINE L2 3154 3188 -84 666 313 40 13 chr12 102777450 102777628 -41504861 + MIR SINE MIR 32 219 -43 2179 93 3 0 chr12 102777628 102777919 -41504570 + AluSp SINE Alu 1 292 -21 666 313 40 13 chr12 102777919 102777964 -41504525 + MIR SINE MIR 219 261 -1 231 316 35 0 chr12 102777959 102778016 -41504473 + L2 LINE L2 3199 3257 -15 * 180 77 0 0 chr12 102778019 102778045 -41504444 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 967 232 0 5 chr12 102778287 102778485 -41504004 - MLT1B LTR MaLR -2 388 192 2004 105 3 7 chr12 102778584 102778879 -41503610 - AluSg SINE Alu -11 299 6 872 185 60 5 chr12 102778905 102779091 -41503398 - MLT1B LTR MaLR -186 188 1 829 193 7 0 chr12 102779228 102779378 -41503111 + MER91B DNA MER1_type 17 167 -23 2197 92 3 19 chr12 102779712 102780026 -41502463 + AluSg SINE Alu 1 309 -1 325 271 246 0 chr12 102780084 102780202 -41502287 - MIR SINE MIR -6 256 110 921 269 49 32 chr12 102780204 102780550 -41501939 + MLT1J LTR MaLR 2 353 -158 2355 130 15 38 chr12 102780552 102780945 -41501544 + Tigger3(Golem) DNA MER2_type 2646 3029 0 2256 191 16 41 chr12 102781012 102781526 -41500963 + MLT1D LTR MaLR 3 503 -2 534 273 74 52 chr12 102781537 102781823 -41500666 - LTR33 LTR ERVL -10 511 228 1788 168 0 3 chr12 102781871 102782169 -41500320 + AluJb SINE Alu 1 297 -15 1866 110 43 17 chr12 102782532 102782832 -41499657 - AluSg1 SINE Alu -1 308 1 23 54 0 0 chr12 102783272 102783309 -41499180 + AT_rich Low_complexity Low_complexity 1 37 0 2234 94 0 0 chr12 102783568 102783865 -41498624 + AluSq SINE Alu 1 297 -16 186 103 0 0 chr12 102784141 102784170 -41498319 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1868 134 0 0 chr12 102784173 102784450 -41498039 - AluJo SINE Alu -30 282 6 793 166 0 43 chr12 102784542 102784681 -41497808 - FLAM_C SINE Alu 0 133 1 280 169 15 31 chr12 102784732 102784797 -41497692 + MLT1L LTR MaLR 11 74 -541 1599 186 3 3 chr12 102784805 102785101 -41497388 - AluJo SINE Alu -15 297 2 910 149 46 29 chr12 102785204 102785379 -41497110 + MER20 DNA MER1_type 42 219 0 322 237 52 31 chr12 102785379 102785474 -41497015 + MLT1L LTR MaLR 148 244 -371 619 279 221 20 chr12 102785486 102785884 -41496605 + MLT1J LTR MaLR 1 478 -33 330 26 0 0 chr12 102785945 102785984 -41496505 + (CA)n Simple_repeat Simple_repeat 1 39 0 571 315 26 39 chr12 102786004 102786236 -41496253 + MLT1L LTR MaLR 331 559 -56 270 95 0 0 chr12 102787407 102787449 -41495040 + (CA)n Simple_repeat Simple_repeat 1 42 0 36 19 0 19 chr12 102787591 102787609 -41494880 + AT_rich Low_complexity Low_complexity 1 18 -35 2104 116 0 0 chr12 102787609 102787912 -41494577 + AluSc SINE Alu 1 303 -6 36 19 0 19 chr12 102787912 102787947 -41494542 + AT_rich Low_complexity Low_complexity 18 53 0 2073 104 10 0 chr12 102787955 102788252 -41494237 - AluSc SINE Alu -9 300 1 259 206 44 29 chr12 102788930 102788998 -41493491 + MIR SINE MIR 164 232 -30 224 254 18 0 chr12 102789039 102789094 -41493395 + L2 LINE L2 3256 3311 -2 25 51 0 0 chr12 102790002 102790041 -41492448 + AT_rich Low_complexity Low_complexity 1 39 0 1007 114 0 74 chr12 102790052 102790182 -41492307 + L1MB5 LINE L1 6012 6127 -47 2029 96 31 14 chr12 102790182 102790473 -41492016 + AluSx SINE Alu 1 296 -16 1007 114 0 74 chr12 102790473 102790518 -41491971 + L1MB5 LINE L1 6127 6174 0 2152 98 16 10 chr12 102791018 102791325 -41491164 + AluSc SINE Alu 1 309 0 3764 123 49 6 chr12 102791433 102792067 -41490422 - L1MA8 LINE L1 -10 6281 5621 1223 225 31 86 chr12 102792073 102792155 -41490334 - MLT1A1 LTR MaLR 0 365 280 2216 80 0 49 chr12 102792155 102792482 -41490007 - AluY SINE Alu 0 311 1 1223 225 31 86 chr12 102792482 102792785 -41489704 - MLT1A1 LTR MaLR -85 280 1 583 138 0 0 chr12 102792785 102792879 -41489610 - L1MA8 LINE L1 -672 5619 5526 541 203 0 56 chr12 102792879 102793022 -41489467 - MER53 DNA DNA -50 139 5 1740 167 0 0 chr12 102793603 102793910 -41488579 - AluJo SINE Alu 0 307 1 340 267 22 98 chr12 102795363 102795449 -41487040 + L2 LINE L2 3008 3099 -214 2156 107 0 0 chr12 102795449 102795739 -41486750 - AluSg SINE Alu -20 290 1 1768 181 10 0 chr12 102795745 102796054 -41486435 - AluJb SINE Alu 0 312 1 340 267 22 98 chr12 102796054 102796185 -41486304 + L2 LINE L2 3104 3215 -98 1881 196 63 55 chr12 102796186 102796373 -41486116 + MLT1C LTR MaLR 1 185 -282 2241 81 0 0 chr12 102796373 102796656 -41485833 + AluSq SINE Alu 2 284 -29 255 31 0 0 chr12 102796659 102796691 -41485798 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1881 196 63 55 chr12 102796691 102796957 -41485532 + MLT1C LTR MaLR 186 462 -5 639 186 10 0 chr12 102796960 102797062 -41485427 + L2 LINE L2 3210 3312 -1 2161 92 0 0 chr12 102797142 102797460 -41485029 - AluSg SINE Alu 0 318 1 1654 197 143 18 chr12 102797476 102797973 -41484516 - LTR48B LTR ERV1 0 644 86 323 145 13 66 chr12 102797954 102798030 -41484459 - LTR29 LTR ERV1 -414 208 137 * 251 218 103 13 chr12 102798005 102798083 -41484406 - MER34 LTR ERV1 -409 133 49 * 843 180 13 20 chr12 102798086 102798221 -41484268 + AluJo SINE Alu 2 137 -175 2145 99 31 0 chr12 102798221 102798513 -41483976 + AluSq SINE Alu 1 301 -12 843 180 13 20 chr12 102798513 102798527 -41483962 + AluJo SINE Alu 137 150 -162 507 154 0 0 chr12 102798526 102798604 -41483885 + AluJ/FRAM SINE Alu 216 293 -19 * 4174 140 3 2 chr12 102799156 102799790 -41482699 + MER41B LTR ERV1 1 635 0 485 193 11 0 chr12 102800041 102800129 -41482360 - MER57A LTR ERV1 -1 402 314 569 255 10 88 chr12 102800214 102800406 -41482083 - LTR8 LTR ERV1 -435 256 80 1167 139 69 32 chr12 102800407 102800623 -41481866 - AluSx SINE Alu -88 224 1 432 258 136 7 chr12 102800808 102800963 -41481526 + MLT1L LTR MaLR 364 538 -77 1944 114 0 33 chr12 102801007 102801313 -41481176 - AluSq SINE Alu -17 296 1 1683 218 95 26 chr12 102801413 102801835 -41480654 - MLT2B2 LTR ERVL -64 451 1 1808 156 58 30 chr12 102802023 102802388 -41480101 + THE1C LTR MaLR 1 375 0 10078 103 6 96 chr12 102802391 102802756 -41479733 + THE1C-int LTR MaLR 4 400 -1180 726 76 0 0 chr12 102802756 102802848 -41479641 - AluSp/q SINE Alu -11 302 211 10078 103 6 96 chr12 102802848 102802898 -41479591 + THE1C-int LTR MaLR 400 453 -1127 2765 7 0 0 chr12 102802898 102803205 -41479284 - AluYa5 SINE Alu -4 307 1 10078 103 6 96 chr12 102803205 102804429 -41478060 + THE1C-int LTR MaLR 453 1580 0 1769 124 118 35 chr12 102804429 102804604 -41477885 + THE1C LTR MaLR 1 160 -215 258 32 0 0 chr12 102804604 102804635 -41477854 + (TC)n Simple_repeat Simple_repeat 1 31 0 1769 124 118 35 chr12 102804635 102804805 -41477684 + THE1C LTR MaLR 160 375 0 2287 116 139 0 chr12 102804812 102805165 -41477324 + MSTA LTR MaLR 27 428 0 312 130 37 0 chr12 102805181 102805235 -41477254 - MLT1A1 LTR MaLR -5 369 314 880 124 5 32 chr12 102805239 102805349 -41477140 + (TTCC)n Simple_repeat Simple_repeat 1 106 -74 2164 111 10 0 chr12 102805349 102805655 -41476834 - AluSc SINE Alu 0 309 1 880 124 5 32 chr12 102805655 102805729 -41476760 + (TTCC)n Simple_repeat Simple_repeat 106 180 0 1368 197 71 0 chr12 102805767 102805935 -41476554 - AluJo SINE Alu -14 298 103 222 37 0 0 chr12 102805935 102805962 -41476527 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1368 197 71 0 chr12 102805962 102806062 -41476427 - AluJo SINE Alu -209 103 11 345 122 7 0 chr12 102806092 102806149 -41476340 - MLT1A1 LTR MaLR -65 300 252 2573 113 6 3 chr12 102806413 102806776 -41475713 + THE1B LTR MaLR 1 364 0 1664 196 8 55 chr12 102807023 102807385 -41475104 + MLT1A1 LTR MaLR 19 363 -2 323 197 15 0 chr12 102807626 102807692 -41474797 - MER96 DNA MER1_type? -108 67 1 274 215 50 36 chr12 102807825 102807939 -41474550 - MLT1J1-int LTR MaLR -1276 95 2 1004 232 148 24 chr12 102807940 102808319 -41474170 - MLT1J1 LTR MaLR 0 446 21 587 271 123 17 chr12 102808781 102809017 -41473472 - LTR16C LTR ERVL -63 428 168 190 333 0 0 chr12 102809333 102809381 -41473108 - L2 LINE L2 -11 3302 3255 213 342 164 0 chr12 102809405 102809557 -41472932 - L2 LINE L2 -16 3297 3121 1369 248 116 22 chr12 102810053 102810512 -41471977 - L2 LINE L2 -1 3312 2811 612 244 86 14 chr12 102810583 102810804 -41471685 + MER20B DNA MER1_type 540 776 -7 1358 239 96 12 chr12 102810814 102811240 -41471249 - L2 LINE L2 -509 2805 2344 188 265 0 0 chr12 102811251 102811285 -41471204 - L2 LINE L2 -34 3279 3246 606 279 136 48 chr12 102811712 102812042 -41470447 - L1ME4a LINE L1 -123 5998 5640 551 311 8 63 chr12 102812053 102812307 -41470182 + MLT1I LTR MaLR 1 240 -169 321 241 13 13 chr12 102812366 102812445 -41470044 + MLT1I LTR MaLR 331 409 0 239 211 58 0 chr12 102812490 102812542 -41469947 + L2 LINE L2 3259 3313 0 342 290 82 27 chr12 102812550 102812733 -41469756 - L1ME4a LINE L1 -580 5541 5349 1307 245 202 29 chr12 102812752 102813456 -41469033 - L2 LINE L2 -1 3312 2450 1720 119 51 31 chr12 102813456 102813750 -41468739 - AluSq SINE Alu -13 300 1 1307 245 202 29 chr12 102813750 102813802 -41468687 - L2 LINE L2 -863 2450 2408 808 285 48 48 chr12 102813958 102814307 -41468182 + MLT1K LTR MaLR 189 540 -48 2335 90 3 0 chr12 102814307 102814619 -41467870 - AluSp SINE Alu 0 313 1 808 285 48 48 chr12 102814619 102814662 -41467827 + MLT1K LTR MaLR 539 581 -7 849 240 67 19 chr12 102815354 102815562 -41466927 + MIR SINE MIR 12 229 -33 1861 187 14 17 chr12 102815566 102815919 -41466570 - MLT1A1 LTR MaLR -4 361 10 180 0 0 0 chr12 102815998 102816018 -41466471 + (A)n Simple_repeat Simple_repeat 1 20 0 2009 116 24 0 chr12 102816247 102816541 -41465948 - AluSx SINE Alu -11 301 1 239 266 62 0 chr12 102816654 102816718 -41465771 - MIR SINE MIR -70 192 125 2242 104 3 0 chr12 102816793 102817101 -41465388 - AluSg SINE Alu -1 309 1 1224 63 0 0 chr12 102817116 102817339 -41465150 + (TA)n Simple_repeat Simple_repeat 1 223 0 1286 164 66 114 chr12 102817348 102817665 -41464824 - AluSx SINE Alu -10 302 1 575 275 200 0 chr12 102817733 102817933 -41464556 - MIR SINE MIR -16 246 7 2095 139 0 0 chr12 102817954 102818270 -41464219 - 7SLRNA srpRNA srpRNA -4 316 1 388 186 82 31 chr12 102818298 102818395 -41464094 - L1ME4a LINE L1 -36 6085 5984 2109 110 3 10 chr12 102818730 102819040 -41463449 + AluSq SINE Alu 1 308 -5 1798 111 0 85 chr12 102819679 102819986 -41462503 + AluSx SINE Alu 1 281 -31 189 0 0 0 chr12 102819988 102820009 -41462480 + (TA)n Simple_repeat Simple_repeat 2 22 0 344 251 50 0 chr12 102820020 102820113 -41462376 - L1MC4 LINE L1 -1339 6983 1996 596 265 65 53 chr12 102820171 102820433 -41462056 - MIR SINE MIR -4 258 2 383 314 46 13 chr12 102820612 102820765 -41461724 + MIR SINE MIR 59 216 -46 708 177 0 0 chr12 102820765 102820878 -41461611 - MER58B DNA MER1_type 0 341 229 2306 86 3 0 chr12 102820886 102821190 -41461299 + AluSx SINE Alu 1 305 -7 1787 161 35 68 chr12 102821198 102821565 -41460924 + MLT1A1 LTR MaLR 4 358 -7 1009 194 25 62 chr12 102821565 102821628 -41460861 - MER58B DNA MER1_type -2186 234 170 1625 156 17 14 chr12 102821628 102821923 -41460566 + AluJb SINE Alu 1 296 -16 1009 194 25 62 chr12 102821923 102822101 -41460388 - MER58B DNA MER1_type -2250 170 2 666 270 107 14 chr12 102822266 102822481 -41460008 - MIR SINE MIR -8 254 20 584 331 67 47 chr12 102822493 102822792 -41459697 - L2 LINE L2 -2 3270 2966 1970 118 16 29 chr12 102822910 102823223 -41459266 - AluSg SINE Alu -1 309 1 337 244 228 12 chr12 102823644 102823803 -41458686 - MIR SINE MIR -26 182 31 443 78 0 0 chr12 102824677 102824741 -41457748 - AluY SINE Alu -10 301 238 7441 108 154 97 chr12 102824741 102826346 -41456143 + pTR5 LTR ERV1 742 2438 0 1644 100 4 8 chr12 102826349 102826590 -41455899 - AluY SINE Alu -71 240 1 2126 107 0 3 chr12 102826592 102826891 -41455598 - AluSx SINE Alu -14 298 1 1660 125 4 4 chr12 102827454 102827702 -41454787 - AluSx SINE Alu -64 248 1 556 180 8 8 chr12 102827823 102827951 -41454538 + CT-rich Low_complexity Low_complexity 3 130 0 1269 154 18 27 chr12 102828290 102828511 -41453978 + MER20 DNA MER1_type 1 219 0 280 282 19 19 chr12 102829125 102829228 -41453261 + L2 LINE L2 2125 2227 -1087 1440 304 136 15 chr12 102829229 102829646 -41452843 + L2 LINE L2 1244 1609 -1705 2051 120 7 3 chr12 102829646 102829946 -41452543 + AluSx SINE Alu 1 301 -11 1440 304 136 15 chr12 102829946 102830196 -41452293 + L2 LINE L2 1609 1992 -1322 2328 80 0 19 chr12 102830420 102830732 -41451757 - AluY SINE Alu -5 306 1 815 150 0 0 chr12 102830769 102830896 -41451593 + FLAM_C SINE Alu 1 127 -16 25 0 0 0 chr12 102831187 102831212 -41451277 + AT_rich Low_complexity Low_complexity 1 25 0 491 297 66 28 chr12 102831251 102831380 -41451109 + MIR SINE MIR 74 213 -49 2240 95 20 0 chr12 102831380 102831686 -41450803 - AluSx SINE Alu 0 312 1 491 297 66 28 chr12 102831686 102831738 -41450751 + MIR SINE MIR 213 262 0 189 0 0 0 chr12 102831983 102832004 -41450485 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 23 33 0 0 chr12 102832292 102832322 -41450167 + AT_rich Low_complexity Low_complexity 1 30 0 1708 146 13 33 chr12 102832362 102832664 -41449825 - AluJb SINE Alu -16 296 1 1903 124 7 7 chr12 102832997 102833295 -41449194 + AluSx SINE Alu 1 298 -14 1099 207 31 22 chr12 102833295 102833517 -41448972 - MER58A DNA MER1_type 0 224 1 266 208 135 52 chr12 102833882 102833978 -41448511 + MLT1H LTR MaLR 333 436 -113 2072 74 4 0 chr12 102834010 102834279 -41448210 + AluSc SINE Alu 35 304 -5 223 304 36 0 chr12 102834456 102834512 -41447977 - MIR SINE MIR -1 261 204 1801 166 0 0 chr12 102834525 102834809 -41447680 - AluJb SINE Alu -25 287 4 583 260 62 39 chr12 102834813 102835021 -41447468 - MIR SINE MIR -49 213 1 4263 171 40 29 chr12 102835081 102835541 -41446948 + L1MB7 LINE L1 4864 5318 -866 2069 126 3 0 chr12 102835541 102835842 -41446647 + AluSx SINE Alu 1 302 -10 4263 171 40 29 chr12 102835842 102836674 -41445815 + L1MB7 LINE L1 5318 6176 -8 254 232 0 24 chr12 102836708 102836790 -41445699 + GA-rich Low_complexity Low_complexity 2 81 0 456 320 66 28 chr12 102836813 102837132 -41445357 - L2 LINE L2 -420 2894 2564 1393 179 107 48 chr12 102837770 102838127 -41444362 - MER69 DNA AcHobo -2 2524 2138 2326 86 0 3 chr12 102838127 102838440 -41444049 - AluSq SINE Alu -1 312 1 1393 179 107 48 chr12 102838440 102838495 -41443994 - MER69 DNA AcHobo -388 2138 2088 1071 132 0 0 chr12 102838535 102838694 -41443795 - FRAM SINE Alu -21 155 1 353 263 0 0 chr12 102838993 102839069 -41443420 - MER69 DNA AcHobo -100 77 2 1631 188 7 10 chr12 102839335 102839639 -41442850 - AluJo SINE Alu -9 303 1 519 228 272 40 chr12 102839779 102839981 -41442508 - MIR SINE MIR 0 262 14 1529 74 0 0 chr12 102840046 102840235 -41442254 + AluY SINE Alu 1 189 -122 499 116 0 0 chr12 102840235 102840304 -41442185 + AluY SINE Alu 223 291 -18 378 91 0 0 chr12 102840424 102840479 -41442010 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 835 118 8 8 chr12 102840526 102840653 -41441836 + FLAM_C SINE Alu 1 127 -16 1306 291 31 33 chr12 102840722 102841231 -41441258 - MLT1J LTR MaLR -2 509 2 2004 101 14 0 chr12 102841783 102842061 -41440428 - AluY SINE Alu -4 307 26 1776 121 109 118 chr12 102842117 102842355 -41440134 - MSTA LTR MaLR -1 427 193 2191 106 0 0 chr12 102842355 102842656 -41439833 - AluSx SINE Alu -1 311 11 1776 121 109 118 chr12 102842656 102842848 -41439641 - MSTA LTR MaLR -235 193 1 727 297 120 13 chr12 102843279 102843579 -41438910 - L3b LINE CR1 -132 1451 1120 207 315 63 49 chr12 102843760 102843903 -41438586 - L3 LINE CR1 -759 818 674 2340 108 8 45 chr12 102844059 102844198 -41438291 - THE1B LTR MaLR 0 364 221 1776 128 58 0 chr12 102844198 102844472 -41438017 - AluSx SINE Alu -22 290 1 2340 108 8 45 chr12 102844472 102844710 -41437779 - THE1B LTR MaLR -143 221 1 1268 161 28 0 chr12 102844745 102844956 -41437533 - MER20 DNA MER1_type 0 219 3 206 333 186 8 chr12 102845125 102845254 -41437235 - MIR SINE MIR -90 172 21 540 124 9 19 chr12 102845456 102845569 -41436920 + L1MA4A LINE L1 6044 6280 -1 823 122 101 7 chr12 102845908 102846047 -41436442 + FRAM SINE Alu 1 152 -24 180 0 0 0 chr12 102846053 102846073 -41436416 + (CAA)n Simple_repeat Simple_repeat 2 21 0 358 313 56 17 chr12 102846931 102847110 -41435379 - L2 LINE L2 -1611 1703 1518 2053 172 57 117 chr12 102847145 102847796 -41434693 - LTR9 LTR ERV1 0 612 1 1759 139 0 72 chr12 102848633 102848965 -41433524 + AluSx SINE Alu 1 308 -4 853 266 62 52 chr12 102848968 102849276 -41433213 - MER102b DNA MER1_type -22 319 9 513 232 0 0 chr12 102849453 102849548 -41432941 - FLAM_C SINE Alu -36 107 13 2246 109 3 0 chr12 102849569 102849881 -41432608 - AluSq SINE Alu 0 313 1 589 226 61 37 chr12 102850457 102850621 -41431868 - MIR SINE MIR -32 230 63 2266 93 0 3 chr12 102850679 102850989 -41431500 + AluSc SINE Alu 1 309 0 2286 99 0 0 chr12 102851049 102851351 -41431138 + AluSc SINE Alu 1 302 -7 1904 156 0 7 chr12 102851507 102851809 -41430680 - AluJo SINE Alu -12 300 1 816 281 35 13 chr12 102851963 102852191 -41430298 - MIR SINE MIR -17 245 13 277 282 59 0 chr12 102853130 102853215 -41429274 + MIR SINE MIR 41 130 -78 1434 192 26 0 chr12 102853367 102853638 -41428851 + AluJo SINE Alu 5 282 -30 23 0 0 0 chr12 102853642 102853665 -41428824 + AT_rich Low_complexity Low_complexity 1 23 0 1654 147 8 0 chr12 102853821 102854080 -41428409 - AluJo SINE Alu -51 261 1 300 226 75 11 chr12 102854496 102854589 -41427900 - MLT1L LTR MaLR -5 610 512 2235 110 7 0 chr12 102854619 102854929 -41427560 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 102854956 102854977 -41427512 + AT_rich Low_complexity Low_complexity 1 21 0 6584 63 36 0 chr12 102854978 102855972 -41426517 - L1PB1 LINE L1 0 6151 5142 681 267 102 58 chr12 102855972 102856316 -41426173 - MLT1L LTR MaLR -152 463 105 366 138 126 58 chr12 102856540 102856627 -41425862 + FLAM_A SINE Alu 16 108 -25 594 275 94 16 chr12 102857082 102857326 -41425163 - L2 LINE L2 0 3313 3051 262 245 28 47 chr12 102857326 102857432 -41425057 + LTR67 LTR ERVL 454 557 0 259 241 74 93 chr12 102857868 102857976 -41424513 - MIR3 SINE MIR -26 182 77 395 306 113 26 chr12 102858171 102858436 -41424053 - L2 LINE L2 -463 2851 2564 2109 120 0 3 chr12 102858465 102858773 -41423716 + AluSg SINE Alu 1 307 -3 531 173 100 9 chr12 102858783 102858893 -41423596 + FLAM_A SINE Alu 3 122 -11 1236 199 116 25 chr12 102859256 102859532 -41422957 + AluJo SINE Alu 1 301 -1 719 185 0 23 chr12 102860410 102860540 -41421949 - FRAM SINE Alu -57 119 1 270 127 79 48 chr12 102860975 102861038 -41421451 - L2 LINE L2 0 3313 3249 259 313 25 12 chr12 102861298 102861378 -41421111 - L2 LINE L2 -1 3312 3232 634 239 12 136 chr12 102861423 102861666 -41420823 - MIR SINE MIR -32 230 18 1931 140 10 0 chr12 102861862 102862155 -41420334 + AluSx SINE Alu 1 296 -16 209 304 0 0 chr12 102862160 102862216 -41420273 + MIR SINE MIR 96 151 -111 637 269 75 28 chr12 102862906 102863074 -41419415 + MIR SINE MIR 38 219 -43 2198 111 0 0 chr12 102863074 102863381 -41419108 + AluSx SINE Alu 1 307 -5 637 269 75 28 chr12 102863381 102863424 -41419065 + MIR SINE MIR 219 259 -3 2318 81 7 0 chr12 102863693 102864001 -41418488 + AluSp SINE Alu 1 310 -3 643 229 0 0 chr12 102864572 102864694 -41417795 - L2 LINE L2 0 3313 3192 229 313 71 54 chr12 102864701 102864813 -41417676 + MIR SINE MIR 90 203 -59 636 218 55 18 chr12 102864863 102865028 -41417461 + LTR33 LTR ERVL 342 512 -9 2070 160 2 72 chr12 102865744 102866043 -41416446 - MLT1B LTR MaLR 0 390 127 2069 118 7 3 chr12 102866043 102866349 -41416140 - AluSx SINE Alu -5 307 1 2070 160 2 72 chr12 102866349 102866468 -41416021 - MLT1B LTR MaLR -263 127 1 358 203 13 51 chr12 102866482 102866561 -41415928 + MER91B DNA MER1_type 113 188 -2 920 181 0 34 chr12 102867197 102867362 -41415127 + MER3 DNA MER1_type 2 115 -47 1688 174 0 13 chr12 102867362 102867661 -41414828 + AluJo SINE Alu 1 295 -17 920 181 0 34 chr12 102867661 102867672 -41414817 + MER3 DNA MER1_type 115 125 -37 235 0 0 0 chr12 102868669 102868695 -41413794 + (T)n Simple_repeat Simple_repeat 1 180 0 2814 3 0 0 chr12 102868695 102869006 -41413483 - AluY SINE Alu 0 337 1 361 307 90 48 chr12 102869065 102869594 -41412895 + L2 LINE L2 2721 3264 -8 1319 180 157 0 chr12 102869740 102870001 -41412488 + AluJb SINE Alu 1 302 0 594 316 81 21 chr12 102870125 102870258 -41412231 + L2 LINE L2 2511 2635 -679 1290 199 33 93 chr12 102870258 102870296 -41412193 + MLT1A2 LTR MaLR 1 40 -334 2384 64 0 0 chr12 102870296 102870592 -41411897 - AluY SINE Alu -15 296 1 1290 199 33 93 chr12 102870592 102870722 -41411767 + MLT1A2 LTR MaLR 40 176 -198 2045 106 7 13 chr12 102870722 102871024 -41411465 + AluSq SINE Alu 1 300 -13 1290 199 33 93 chr12 102871024 102871252 -41411237 + MLT1A2 LTR MaLR 176 374 0 594 316 81 21 chr12 102871252 102871501 -41410988 + L2 LINE L2 2635 2916 -398 725 286 81 26 chr12 102871555 102871828 -41410661 + L2 LINE L2 3020 3307 -6 459 254 49 36 chr12 102872344 102872542 -41409947 + MIR SINE MIR 20 217 -45 2135 107 0 0 chr12 102872599 102872929 -41409560 + AluSx SINE Alu 1 330 0 299 0 0 73 chr12 102872997 102873052 -41409437 + (TG)n Simple_repeat Simple_repeat 2 52 0 202 279 0 0 chr12 102873191 102873234 -41409255 + L2 LINE L2 2605 2647 -667 285 270 270 7 chr12 102873301 102873453 -41409036 + MIR SINE MIR 3 194 -68 310 276 66 53 chr12 102873874 102874026 -41408463 + L2 LINE L2 3116 3269 -3 5809 33 11 1 chr12 102874105 102874972 -41407517 + SVA Other Other 1 1419 0 2283 89 3 0 chr12 102874987 102875290 -41407199 + AluSp SINE Alu 1 304 -9 714 245 7 0 chr12 102875306 102875453 -41407036 + MIR SINE MIR 5 152 -110 203 56 83 0 chr12 102875454 102875490 -41406999 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 192 280 151 21 chr12 102875492 102875585 -41406904 + MIR SINE MIR 158 262 0 434 289 7 21 chr12 102875844 102875986 -41406503 - MLT1I LTR MaLR -229 180 41 533 214 118 101 chr12 102876447 102876511 -41405978 - MIR SINE MIR -51 211 150 2166 79 4 0 chr12 102876511 102876964 -41405525 - AluSp SINE Alu 0 456 3 533 214 118 101 chr12 102876964 102877076 -41405413 - MIR SINE MIR -112 150 31 750 78 16 48 chr12 102880349 102880728 -41401761 + (CA)n Simple_repeat Simple_repeat 1 366 0 187 258 22 90 chr12 102882954 102883005 -41399484 - L2 LINE L2 0 3272 3228 369 102 0 0 chr12 102883005 102883064 -41399425 + (TTCA)n Simple_repeat Simple_repeat 4 62 0 187 258 22 90 chr12 102883064 102883101 -41399388 - L2 LINE L2 -44 3228 3190 344 219 0 0 chr12 102883728 102883792 -41398697 + Charlie8 DNA MER1_type 2340 2403 -14 1947 133 10 0 chr12 102884454 102884756 -41397733 - AluSx SINE Alu -7 305 1 881 171 79 0 chr12 102884879 102885043 -41397446 + AluJo SINE Alu 1 177 -135 674 142 0 26 chr12 102885300 102885413 -41397076 + FLAM_C SINE Alu 2 111 -32 2116 124 0 0 chr12 102887085 102887384 -41395105 + AluSx SINE Alu 3 301 -11 777 279 94 26 chr12 102887613 102887954 -41394535 + L2 LINE L2 2575 2938 -376 914 176 6 6 chr12 102887969 102888128 -41394361 - AluJb SINE Alu -17 295 137 612 277 176 25 chr12 102888138 102888416 -41394073 + L2 LINE L2 2994 3313 0 233 322 104 16 chr12 102889195 102889378 -41393111 - L2 LINE L2 -1106 2208 2010 370 277 43 64 chr12 102889438 102889579 -41392910 + L2 LINE L2 3172 3309 -4 365 272 44 0 chr12 102889682 102889796 -41392693 + MIR SINE MIR 139 257 -5 1944 150 0 6 chr12 102889859 102890173 -41392316 - AluJb SINE Alu 0 312 1 741 186 18 0 chr12 102890282 102890449 -41392040 - L1MA4 LINE L1 -7 6293 6124 605 121 0 0 chr12 102890449 102890532 -41391957 - AluS SINE Alu -229 84 2 4063 157 4 12 chr12 102890533 102891219 -41391270 - L1MA4 LINE L1 -159 6141 5461 284 180 0 0 chr12 102891228 102891278 -41391211 - AluJb SINE Alu -169 133 84 1328 122 5 33 chr12 102891278 102891492 -41390997 - AluJo SINE Alu -94 218 11 565 121 33 0 chr12 102891504 102891595 -41390894 - L1MA4 LINE L1 -828 5472 5379 441 275 20 110 chr12 102891912 102892039 -41390450 + MIR3 SINE MIR 22 159 -49 1660 182 3 10 chr12 102892039 102892335 -41390154 + AluJb SINE Alu 1 294 -18 441 275 20 110 chr12 102892335 102892368 -41390121 + MIR3 SINE MIR 159 163 -45 1527 250 77 60 chr12 102892368 102892904 -41389585 + MLT1H LTR MaLR 5 549 0 441 275 20 110 chr12 102892904 102892942 -41389547 + MIR3 SINE MIR 163 203 -5 304 319 115 45 chr12 102893466 102893623 -41388866 - MIR3 SINE MIR -12 196 29 2066 133 0 3 chr12 102893629 102893937 -41388552 - AluSx SINE Alu -5 307 1 1556 163 53 20 chr12 102893972 102894273 -41388216 + AluJb SINE Alu 1 311 -1 331 269 216 54 chr12 102894445 102894467 -41388022 - L2 LINE L2 -4 3309 3292 2220 103 7 3 chr12 102894467 102894777 -41387712 + AluSx SINE Alu 1 311 -1 331 269 216 54 chr12 102894777 102895060 -41387429 - L2 LINE L2 -21 3292 2931 2253 103 0 0 chr12 102895060 102895372 -41387117 + AluSx SINE Alu 1 312 0 331 269 216 54 chr12 102895372 102895436 -41387053 - L2 LINE L2 -382 2931 2879 274 360 133 7 chr12 102895571 102895721 -41386768 - MIR SINE MIR -14 248 80 1999 141 0 0 chr12 102895823 102896113 -41386376 - AluSx SINE Alu -22 290 1 268 327 140 0 chr12 102896156 102896263 -41386226 + L2 LINE L2 3151 3272 0 253 208 198 31 chr12 102896335 102896431 -41386058 - MIR3 SINE MIR -93 115 4 2228 138 30 25 chr12 102896914 102897276 -41385213 - THE1B LTR MaLR 0 364 1 2199 106 0 0 chr12 102897444 102897746 -41384743 + AluSc SINE Alu 1 302 -7 32 0 0 0 chr12 102898058 102898090 -41384399 + AT_rich Low_complexity Low_complexity 1 32 0 1069 165 58 53 chr12 102898092 102898335 -41384154 - AluJo SINE Alu -68 244 1 388 250 21 0 chr12 102898962 102899058 -41383431 - MER112 DNA MER1_type -10 250 153 1849 104 64 4 chr12 102899107 102899387 -41383102 - AluSx SINE Alu -13 299 3 1520 159 17 35 chr12 102899479 102899813 -41382676 + AluJo SINE Alu 1 329 0 308 262 84 0 chr12 102899819 102899926 -41382563 - MER112 DNA MER1_type -144 116 1 255 250 0 0 chr12 102900035 102900087 -41382402 + LTR30 LTR ERV1 1 52 -670 950 135 3 177 chr12 102900087 102900369 -41382120 + LTR12 LTR ERV1 53 285 -429 371 222 11 0 chr12 102900369 102900459 -41382030 + LTR30 LTR ERV1 552 642 -80 750 109 0 0 chr12 102900461 102900562 -41381927 + LTR12 LTR ERV1 481 581 -133 2104 168 23 8 chr12 102900568 102900920 -41381569 + MLT1A1 LTR MaLR 9 365 0 222 255 242 78 chr12 102900955 102901108 -41381381 - MIR3 SINE MIR -15 193 16 443 310 19 26 chr12 102901131 102901286 -41381203 + MIR SINE MIR 1 154 -108 218 285 15 85 chr12 102903546 102903676 -41378813 - L2 LINE L2 -180 3092 2972 204 222 0 0 chr12 102903749 102903785 -41378704 - MER5B DNA MER1_type -139 39 4 287 281 74 25 chr12 102903856 102903977 -41378512 + L3b LINE CR1 1280 1406 -177 1630 188 20 62 chr12 102904087 102904351 -41378138 - MER58B DNA MER1_type -2079 341 94 2322 168 43 9 chr12 102904351 102904468 -41378021 + L1MB2 LINE L1 5709 5821 -350 1752 160 3 0 chr12 102904468 102904792 -41377697 + AluJo SINE Alu 1 312 0 2322 168 43 9 chr12 102904792 102905120 -41377369 + L1MB2 LINE L1 5821 6169 -2 1630 188 20 62 chr12 102905120 102905211 -41377278 - MER58B DNA MER1_type -2326 94 1 268 227 45 45 chr12 102905459 102905547 -41376942 - MIR SINE MIR -89 119 32 272 276 91 87 chr12 102905852 102906138 -41376351 + MLT1I LTR MaLR 123 409 0 1886 134 0 38 chr12 102906513 102906833 -41375656 - AluJb SINE Alu -4 308 1 2323 94 0 0 chr12 102907314 102907621 -41374868 + AluSg SINE Alu 4 310 0 609 182 0 50 chr12 102907621 102907742 -41374747 - FLAM_A SINE Alu -18 115 1 2465 125 67 28 chr12 102907745 102907762 -41374727 - L1MC1 LINE L1 -8 6325 6310 2015 126 0 28 chr12 102907762 102908079 -41374410 - AluSx SINE Alu -4 308 1 2465 125 67 28 chr12 102908079 102908493 -41373996 - L1MC1 LINE L1 -23 6310 5877 202 309 73 45 chr12 102908881 102908991 -41373498 - L2 LINE L2 -35 3237 3125 372 256 80 24 chr12 102909057 102909182 -41373307 - MER5B DNA MER1_type -44 134 3 335 218 207 0 chr12 102909182 102909265 -41373224 + MER5A DNA MER1_type 86 186 -3 1926 107 7 45 chr12 102909605 102909914 -41372575 - AluSq SINE Alu -16 297 1 216 198 26 43 chr12 102910339 102910455 -41372034 + (CGCGG)n Simple_repeat Simple_repeat 1 114 0 231 131 16 66 chr12 102910807 102910874 -41371615 + G-rich Low_complexity Low_complexity 1 63 0 189 0 0 0 chr12 102912768 102912789 -41369700 + (T)n Simple_repeat Simple_repeat 1 21 0 190 205 26 0 chr12 102912989 102913028 -41369461 + L2 LINE L2 3255 3294 -19 941 169 132 5 chr12 102913235 102913424 -41369065 + MER20 DNA MER1_type 2 214 -5 507 208 0 0 chr12 102914281 102914377 -41368112 - FLAM_A SINE Alu -42 100 5 249 208 186 91 chr12 102914660 102914891 -41367598 - L1ME4a LINE L1 0 6121 5869 306 0 0 0 chr12 102915501 102915535 -41366954 + (TG)n Simple_repeat Simple_repeat 1 34 0 1196 130 90 5 chr12 102916085 102916308 -41366181 - L1MA5A LINE L1 -3 6294 6053 425 120 250 9 chr12 102916404 102916512 -41365977 - L1ME3 LINE L1 0 6162 6029 1073 157 0 50 chr12 102916532 102916685 -41365804 - AluJo SINE Alu -26 286 144 1829 151 3 3 chr12 102916685 102916983 -41365506 - AluSx SINE Alu -14 298 1 1073 157 0 50 chr12 102916983 102917027 -41365462 - AluJo SINE Alu -168 144 99 1206 186 155 8 chr12 102917359 102917623 -41364866 + AluY SINE Alu 1 303 -8 433 333 68 12 chr12 102918129 102918291 -41364198 + L2 LINE L2 2650 2820 -494 1978 142 0 0 chr12 102918544 102918847 -41363642 - AluSx SINE Alu -9 303 1 2092 87 18 0 chr12 102918925 102919201 -41363288 - AluSg SINE Alu -29 281 1 234 273 55 45 chr12 102919392 102919502 -41362987 + L2 LINE L2 3123 3233 -39 2304 106 0 0 chr12 102919679 102919971 -41362518 + AluSx SINE Alu 1 292 -20 1004 168 5 26 chr12 102921490 102921680 -41360809 - AluJo SINE Alu -8 304 119 2057 111 46 0 chr12 102922331 102922611 -41359878 - AluSg SINE Alu -6 304 12 2239 109 3 0 chr12 102924068 102924372 -41358117 - AluSx SINE Alu -7 305 1 199 258 30 30 chr12 102926142 102926208 -41356281 - L2 LINE L2 -2036 1278 1213 312 27 0 0 chr12 102926582 102926619 -41355870 + (CA)n Simple_repeat Simple_repeat 1 37 0 445 262 191 38 chr12 102926993 102927203 -41355286 + MIR SINE MIR 15 256 -6 390 21 0 0 chr12 102927500 102927547 -41354942 + (TG)n Simple_repeat Simple_repeat 2 48 0 315 241 13 0 chr12 102927573 102927652 -41354837 + MER116 DNA Mariner 1 80 0 237 260 26 39 chr12 102929002 102929079 -41353410 - L2 LINE L2 -4 3309 3234 1928 141 11 3 chr12 102929744 102930027 -41352462 - AluJo SINE Alu -10 302 18 2323 115 0 0 chr12 102930169 102930481 -41352008 + AluSx SINE Alu 1 312 0 2059 135 7 10 chr12 102931650 102931954 -41350535 - AluJb SINE Alu -9 303 1 864 236 25 33 chr12 102932687 102932929 -41349560 - MIR SINE MIR 0 262 23 1554 197 14 0 chr12 102932993 102933282 -41349207 + AluJo SINE Alu 1 293 -19 1179 211 111 21 chr12 102933282 102933662 -41348827 + LTR37A LTR ERV1 13 426 0 2432 79 0 7 chr12 102933674 102933978 -41348511 + AluSx SINE Alu 1 302 -10 870 218 22 0 chr12 102934459 102934638 -41347851 + L1PB4 LINE L1 5966 6148 -8 2603 53 0 0 chr12 102934669 102934968 -41347521 - AluY SINE Alu -12 299 1 205 233 17 17 chr12 102936232 102936292 -41346197 + CT-rich Low_complexity Low_complexity 2 61 0 2397 87 0 13 chr12 102936403 102936712 -41345777 - AluSq SINE Alu -8 305 1 366 323 19 38 chr12 102938253 102938411 -41344078 - L2 LINE L2 -203 3069 2915 200 294 157 10 chr12 102938606 102938708 -41343781 - L2 LINE L2 -58 3214 3098 3040 115 7 2 chr12 102938763 102939189 -41343300 - MSTA LTR MaLR 0 428 1 383 203 20 150 chr12 102940193 102940346 -41342143 + MIR SINE MIR 90 222 -40 214 270 135 0 chr12 102940347 102940421 -41342068 + MIR SINE MIR 139 222 -40 285 303 79 0 chr12 102940422 102940511 -41341978 + MIR SINE MIR 139 234 -28 584 263 46 37 chr12 102941542 102941738 -41340751 - MIR SINE MIR -38 224 31 2015 155 10 7 chr12 102941873 102942183 -41340306 + AluJb SINE Alu 1 311 -1 332 329 0 0 chr12 102942455 102942684 -41339805 + (CA)n Simple_repeat Simple_repeat 1 229 0 293 250 37 19 chr12 102942816 102942924 -41339565 + GA-rich Low_complexity Low_complexity 3 112 0 649 281 109 9 chr12 102943743 102943964 -41338525 + MIR SINE MIR 6 248 -14 475 105 0 40 chr12 102944051 102944127 -41338362 + FLAM SINE Alu 54 126 -17 2606 72 0 0 chr12 102944158 102944465 -41338024 + AluSc SINE Alu 1 307 -2 338 282 28 63 chr12 102944833 102944975 -41337514 + MIR SINE MIR 103 239 -23 266 309 0 37 chr12 102945070 102945151 -41337338 + L2 LINE L2 3195 3272 0 1735 204 40 26 chr12 102945269 102945544 -41336945 - MLT1C LTR MaLR -5 462 177 2348 114 0 0 chr12 102945544 102945850 -41336639 - AluSg SINE Alu -4 306 1 1735 204 40 26 chr12 102945850 102946030 -41336459 - MLT1C LTR MaLR -290 177 1 2030 161 32 12 chr12 102946040 102946381 -41336108 + MER7A DNA MER2_type 1 346 0 2084 113 32 0 chr12 102947521 102947804 -41334685 - AluSq SINE Alu -21 292 1 336 316 37 82 chr12 102947893 102948269 -41334220 - L2 LINE L2 -86 3186 2828 2310 91 6 25 chr12 102948309 102948627 -41333862 + AluSx SINE Alu 1 312 0 853 145 0 8 chr12 102948662 102948786 -41333703 + FLAM_C SINE Alu 15 137 -6 943 161 0 56 chr12 102948824 102949004 -41333485 + AluJo SINE Alu 121 290 -22 381 289 60 45 chr12 102950659 102950860 -41331629 - MIR SINE MIR -35 227 24 2044 131 16 7 chr12 102951836 102952142 -41330347 - AluSx SINE Alu 0 312 4 201 147 0 0 chr12 102952589 102952623 -41329866 + (TG)n Simple_repeat Simple_repeat 1 34 0 1290 229 76 35 chr12 102952779 102953211 -41329278 - MLT1C LTR MaLR 0 467 18 517 195 0 0 chr12 102953309 102953396 -41329093 + AluJ/FLAM SINE Alu 1 87 -225 196 262 87 111 chr12 102953547 102953655 -41328834 + L2 LINE L2 3147 3253 -19 1008 195 0 6 chr12 102953655 102953829 -41328660 + FAM SINE Alu 1 173 -2 196 262 87 111 chr12 102953829 102953846 -41328643 + L2 LINE L2 3253 3269 -3 451 235 90 37 chr12 102954226 102954439 -41328050 - MIR SINE MIR -5 257 33 328 276 74 19 chr12 102954982 102955110 -41327379 + MIR SINE MIR 9 141 -67 314 241 158 108 chr12 102955112 102955453 -41327036 - L1ME4a LINE L1 -6 6115 5758 192 269 54 108 chr12 102955459 102955552 -41326937 + MIR SINE MIR 92 179 -83 221 284 121 64 chr12 102956381 102956522 -41325967 - MIR SINE MIR -2 260 112 297 0 0 0 chr12 102957447 102957480 -41325009 + (TG)n Simple_repeat Simple_repeat 2 34 0 576 283 99 13 chr12 102958265 102958498 -41323991 + MIR SINE MIR 10 262 0 900 158 166 58 chr12 102959164 102959442 -41323047 - L1MB8 LINE L1 0 6178 5871 2236 95 18 0 chr12 102959473 102959588 -41322901 + AluSx SINE Alu 13 125 -187 2356 59 24 3 chr12 102959588 102959877 -41322612 + AluY SINE Alu 1 295 -16 2236 95 18 0 chr12 102959877 102960046 -41322443 + AluSx SINE Alu 125 302 -10 456 230 0 0 chr12 102960182 102960282 -41322207 - L1MB8 LINE L1 -346 5832 5733 21 36 0 0 chr12 102960458 102960486 -41322003 + AT_rich Low_complexity Low_complexity 1 28 0 192 322 99 25 chr12 102961411 102961532 -41320957 + MIR SINE MIR 90 219 -43 21 0 0 0 chr12 102962036 102962057 -41320432 + AT_rich Low_complexity Low_complexity 1 21 0 368 289 94 40 chr12 102962208 102962409 -41320080 + MIR SINE MIR 51 262 0 1581 149 0 24 chr12 102962437 102962685 -41319804 + AluJo SINE Alu 45 286 -26 189 0 0 0 chr12 102962685 102962706 -41319783 + (CAT)n Simple_repeat Simple_repeat 2 22 0 337 248 104 21 chr12 102962707 102962831 -41319658 - MIR SINE MIR -62 146 16 185 292 101 0 chr12 102964553 102964642 -41317847 + MIR SINE MIR 47 144 -118 844 249 24 24 chr12 102964787 102964862 -41317627 - MIR SINE MIR -32 230 156 1397 169 0 4 chr12 102964862 102965099 -41317390 - MER46A DNA MER2_type 0 236 1 844 249 24 24 chr12 102965099 102965236 -41317253 - MIR SINE MIR -105 157 18 12530 109 45 30 chr12 102966993 102968999 -41313490 + Tigger1 DNA MER2_type 1 2040 -378 2284 110 3 3 chr12 102968999 102969309 -41313180 + AluSq SINE Alu 1 310 -3 12530 109 45 30 chr12 102969309 102969379 -41313110 + Tigger1 DNA MER2_type 2040 2107 -311 306 353 91 48 chr12 102969830 102970017 -41312472 - L2 LINE L2 0 3272 3078 2158 136 3 0 chr12 102970064 102970366 -41312123 + AluSx SINE Alu 1 303 -9 426 299 73 81 chr12 102970605 102970986 -41311503 - L2 LINE L2 -10 3262 2885 312 263 232 17 chr12 102970977 102971449 -41311040 - L2 LINE L2 -556 2758 2165 * 1288 38 0 0 chr12 102971602 102971761 -41310728 - MER4E LTR ERV1 -10 756 598 1454 78 41 5 chr12 102971766 102971985 -41310504 - MER4E LTR ERV1 -539 227 1 942 227 24 36 chr12 102973988 102974235 -41308254 - MIR SINE MIR -12 250 7 2174 100 28 0 chr12 102975290 102975579 -41306910 + AluSx SINE Alu 1 297 -15 849 136 7 29 chr12 102976183 102976323 -41306166 + FLAM_C SINE Alu 1 137 -6 500 367 42 9 chr12 102976836 102977051 -41305438 + L2 LINE L2 3051 3272 0 220 283 206 11 chr12 102977564 102977656 -41304833 + L2 LINE L2 3198 3307 -6 722 198 53 43 chr12 102977917 102978038 -41304451 - MER5A DNA MER1_type 0 189 64 2165 146 0 0 chr12 102978038 102978339 -41304150 - AluSx SINE Alu -11 301 1 722 198 53 43 chr12 102978339 102978404 -41304085 - MER5A DNA MER1_type -125 64 1 818 125 23 23 chr12 102978837 102978965 -41303524 - FLAM_A SINE Alu -9 133 6 1655 182 7 32 chr12 102979999 102980307 -41302182 - AluJb SINE Alu -12 300 1 1753 167 7 7 chr12 102980521 102980820 -41301669 + AluJo SINE Alu 1 299 -13 511 270 207 31 chr12 102980823 102981045 -41301444 - MIR SINE MIR 0 262 2 1737 185 23 0 chr12 102981424 102981726 -41300763 + AluJb SINE Alu 1 309 -3 385 327 63 0 chr12 102981798 102981957 -41300532 + L1M4 LINE L1 3339 3507 -2639 398 261 63 0 chr12 102982006 102982117 -41300372 + MIR SINE MIR 52 169 -93 32 26 0 0 chr12 102982734 102982773 -41299716 + AT_rich Low_complexity Low_complexity 1 39 0 253 306 82 33 chr12 102985032 102985215 -41297274 - MIR3 SINE MIR -12 196 5 2319 103 0 0 chr12 102986571 102986872 -41295617 + AluSq SINE Alu 1 301 -12 786 239 122 9 chr12 102987073 102987295 -41295194 - MIR SINE MIR 0 262 16 294 29 0 0 chr12 102987510 102987545 -41294944 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 291 191 0 chr12 102987749 102987859 -41294630 - L2 LINE L2 -1 3312 3182 2214 127 0 0 chr12 102989260 102989551 -41292938 + AluSx SINE Alu 1 291 -21 2312 202 42 31 chr12 102989861 102990727 -41291762 + L1MB4 LINE L1 2198 3066 -3316 * 7014 194 45 25 chr12 102990699 102992517 -41289972 + L1MB4 LINE L1 3526 5436 -980 2247 126 0 0 chr12 102992517 102992827 -41289662 + AluSg SINE Alu 1 310 0 7014 194 45 25 chr12 102992827 102993801 -41288688 + L1MB4 LINE L1 5436 6389 -27 414 0 0 0 chr12 102993801 102993847 -41288642 + (TA)n Simple_repeat Simple_repeat 2 47 0 808 192 0 0 chr12 103094252 103094382 -41188107 + AluJb SINE Alu 4 133 -179 1947 149 0 0 chr12 103094386 103094675 -41187814 + AluSx SINE Alu 1 289 -23 611 194 0 24 chr12 103094677 103094801 -41187688 + L1PA16 LINE L1 6028 6148 -18 316 274 18 91 chr12 103094869 103094899 -41187590 + L2 LINE L2 3097 3128 -185 2296 114 0 0 chr12 103094899 103095205 -41187284 - AluSc SINE Alu -3 306 1 316 274 18 91 chr12 103095205 103095393 -41187096 + L2 LINE L2 3128 3299 -14 2082 97 7 4 chr12 103095406 103095685 -41186804 - AluSx SINE Alu -15 297 18 2532 53 0 25 chr12 103097052 103097370 -41185119 - AluY SINE Alu -1 310 1 739 269 92 8 chr12 103097467 103097705 -41184784 + MIR SINE MIR 2 259 -3 349 301 151 15 chr12 103097706 103097945 -41184544 - L1MC4a LINE L1 -1913 5895 5617 2301 108 0 0 chr12 103097945 103098240 -41184249 + AluSx SINE Alu 1 295 -17 349 301 151 15 chr12 103098240 103098259 -41184230 - L1MC4a LINE L1 -2191 5617 5602 1422 167 107 7 chr12 103098458 103098739 -41183750 + AluJo SINE Alu 4 312 0 367 193 96 59 chr12 103098745 103098880 -41183609 - MER53 DNA DNA -49 140 1 317 331 8 16 chr12 103098986 103099113 -41183376 - HAL1 LINE L1 -1557 950 825 544 235 17 0 chr12 103099308 103099427 -41183062 - MER94 DNA DNA -12 122 2 430 189 142 24 chr12 103099857 103099984 -41182505 - MIR SINE MIR -32 230 89 2175 164 70 43 chr12 103100093 103100457 -41182032 + MSTB LTR MaLR 1 380 -46 1913 98 72 4 chr12 103100457 103100742 -41181747 + AluSx SINE Alu 1 303 0 2175 164 70 43 chr12 103100742 103100791 -41181698 + MSTB LTR MaLR 380 426 0 351 279 58 77 chr12 103101183 103101391 -41181098 - MIR3 SINE MIR -1 207 4 2053 127 0 10 chr12 103101837 103102129 -41180360 + AluSg SINE Alu 1 289 -21 1397 95 0 0 chr12 103102149 103102328 -41180161 + AluSg/x SINE Alu 129 307 -5 2256 118 0 6 chr12 103102479 103102792 -41179697 + AluSx SINE Alu 2 312 0 465 145 14 0 chr12 103102795 103102864 -41179625 + AluJo SINE Alu 9 78 -234 535 224 60 128 chr12 103103007 103103204 -41179285 - LTR49-int LTR ERV1 -1602 4964 4755 279 67 67 22 chr12 103103204 103103249 -41179240 + AluJo SINE Alu 88 134 -168 535 224 60 128 chr12 103103249 103103702 -41178787 - LTR49-int LTR ERV1 -1811 4755 4335 2188 113 0 3 chr12 103103702 103103995 -41178494 + AluSq SINE Alu 1 292 -21 535 224 60 128 chr12 103103995 103104019 -41178470 - LTR49-int LTR ERV1 -2231 4335 4311 1783 158 0 42 chr12 103104165 103104476 -41178013 + AluJb SINE Alu 6 303 -9 2236 124 0 0 chr12 103105893 103106200 -41176289 - AluSx SINE Alu -5 307 1 216 0 0 0 chr12 103106442 103106466 -41176023 + (T)n Simple_repeat Simple_repeat 1 24 0 2071 136 0 0 chr12 103106866 103107153 -41175336 - AluSx SINE Alu -19 293 7 1741 153 37 10 chr12 103107768 103108062 -41174427 + AluJo SINE Alu 1 302 -10 771 250 69 26 chr12 103108396 103108700 -41173789 + L1ME3A LINE L1 5629 5945 -225 234 0 0 0 chr12 103108964 103108990 -41173499 + (A)n Simple_repeat Simple_repeat 1 26 0 745 126 9 18 chr12 103109136 103109247 -41173242 + AluSq/x SINE Alu 2 111 -201 2163 121 20 0 chr12 103110473 103110779 -41171710 - AluSx SINE Alu 0 312 1 2323 96 0 7 chr12 103110784 103111085 -41171404 - AluSx SINE Alu -13 299 1 226 226 129 21 chr12 103111085 103111178 -41171311 + MLT1K LTR MaLR 486 588 0 1676 118 115 14 chr12 103111683 103111962 -41170527 - AluSg1 SINE Alu -2 307 1 2063 121 4 0 chr12 103112404 103112717 -41169772 + AluSx SINE Alu 1 314 0 729 211 0 0 chr12 103112732 103112846 -41169643 + FLAM_A SINE Alu 2 115 -18 419 303 48 7 chr12 103113049 103113194 -41169295 + MLT1J LTR MaLR 290 440 -71 2220 109 3 3 chr12 103113199 103113502 -41168987 + AluSc SINE Alu 1 303 -6 2172 114 0 13 chr12 103113626 103113925 -41168564 + AluSx SINE Alu 1 295 -17 290 317 10 0 chr12 103114368 103114472 -41168017 + L2 LINE L2 1893 1997 -1317 1183 133 4 126 chr12 103114488 103114576 -41167913 - L1MB3 LINE L1 -47 6136 6039 1547 173 16 65 chr12 103114576 103114899 -41167590 - AluJo SINE Alu -5 307 1 1183 133 4 126 chr12 103114899 103115037 -41167452 - L1MB3 LINE L1 -144 6039 5946 2182 134 0 0 chr12 103115037 103115350 -41167139 - AluSq SINE Alu 0 313 1 1183 133 4 126 chr12 103115350 103115393 -41167096 - L1MB3 LINE L1 -237 5946 5899 1725 155 29 4 chr12 103116075 103116375 -41166114 + AluSx SINE Alu 1 307 0 895 83 0 0 chr12 103116378 103116487 -41166002 + AluSg SINE Alu 1 109 -201 182 293 57 49 chr12 103116819 103116942 -41165547 - MIR SINE MIR -66 196 73 1101 158 172 13 chr12 103117123 103117440 -41165049 + Charlie1b DNA MER1_type 1 376 -147 294 116 0 0 chr12 103117488 103117531 -41164958 + Charlie1b DNA MER1_type 476 518 -5 25 0 0 0 chr12 103118037 103118062 -41164427 + AT_rich Low_complexity Low_complexity 1 25 0 753 101 0 0 chr12 103118098 103118197 -41164292 + AluSq SINE Alu 1 99 -214 1053 116 0 0 chr12 103118197 103118343 -41164146 + AluSp/q SINE Alu 161 306 -7 297 68 0 0 chr12 103118578 103118622 -41163867 + (TG)n Simple_repeat Simple_repeat 2 45 0 2075 120 0 22 chr12 103119893 103120210 -41162279 + AluSq SINE Alu 1 310 -3 2307 106 0 6 chr12 103120227 103120538 -41161951 + AluSg SINE Alu 1 309 -1 2196 93 7 0 chr12 103120662 103120953 -41161536 + AluY SINE Alu 1 293 -18 508 316 36 62 chr12 103120975 103121200 -41161289 - L3 LINE CR1 -212 1365 1147 206 236 79 79 chr12 103121257 103121384 -41161105 - L3 LINE CR1 -551 1026 900 2160 102 20 7 chr12 103121693 103121988 -41160501 - AluSx SINE Alu -13 299 1 2033 59 4 26 chr12 103121996 103122266 -41160223 - AluY SINE Alu -14 297 34 308 130 37 0 chr12 103122272 103122326 -41160163 - LTR44 LTR ERV1 -127 392 337 2089 98 0 73 chr12 103122341 103122503 -41159986 - AluSq SINE Alu -18 295 166 2139 75 7 4 chr12 103122503 103122781 -41159708 - AluY SINE Alu -12 299 21 2089 98 0 73 chr12 103122781 103122935 -41159554 - AluSq SINE Alu -147 166 2 1178 149 17 111 chr12 103122936 103123224 -41159265 - AluJo SINE Alu -13 299 39 227 91 0 23 chr12 103124813 103124857 -41157632 + (CCCCCG)n Simple_repeat Simple_repeat 5 47 0 21 57 0 0 chr12 103125144 103125179 -41157310 + GC_rich Low_complexity Low_complexity 1 35 0 235 0 0 54 chr12 103127296 103127333 -41155156 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2042 89 4 0 chr12 103127336 103127605 -41154884 - AluSx SINE Alu -26 286 17 1716 161 26 0 chr12 103127768 103128072 -41154417 - AluSx SINE Alu 0 312 1 2409 78 7 0 chr12 103128082 103128391 -41154098 - AluSq SINE Alu -2 311 1 240 377 41 20 chr12 103128398 103128544 -41153945 + L2 LINE L2 3116 3264 -8 539 160 343 6 chr12 103128982 103129151 -41153338 - MIR SINE MIR -34 228 3 393 22 0 0 chr12 103129209 103129255 -41153234 + (TA)n Simple_repeat Simple_repeat 2 47 0 1680 109 0 28 chr12 103129354 103129602 -41152887 - AluSx SINE Alu -9 303 63 1800 117 0 35 chr12 103129696 103129890 -41152599 - AluSx SINE Alu -17 295 113 2206 111 108 3 chr12 103129890 103130231 -41152258 + MER51B LTR ERV1 1 377 0 1800 117 0 35 chr12 103130231 103130326 -41152163 - AluSx SINE Alu -199 113 16 24 53 0 0 chr12 103131067 103131105 -41151384 + AT_rich Low_complexity Low_complexity 1 38 0 1553 178 3 31 chr12 103131137 103131458 -41151031 - AluJb SINE Alu 0 312 1 2011 135 0 0 chr12 103131531 103131820 -41150669 + AluSx SINE Alu 3 291 -21 411 136 0 0 chr12 103131835 103131901 -41150588 + Charlie5 DNA MER1_type 2520 2585 -27 505 278 34 28 chr12 103132035 103132211 -41150278 + L1ME LINE L1 5536 5712 -458 470 236 0 65 chr12 103132271 103132394 -41150095 - FLAM_A SINE Alu -17 116 2 435 314 143 14 chr12 103132602 103132882 -41149607 - L2 LINE L2 -1415 1899 1584 186 43 0 0 chr12 103132992 103133015 -41149474 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1422 186 4 0 chr12 103133041 103133294 -41149195 - AluJo SINE Alu -58 254 1 345 224 15 0 chr12 103133333 103133400 -41149089 - L2 LINE L2 -4 3309 3242 2169 98 3 0 chr12 103133900 103134195 -41148294 - AluSc SINE Alu -13 296 1 2161 112 0 3 chr12 103134446 103134760 -41147729 - AluSq SINE Alu 0 313 1 244 222 0 0 chr12 103135253 103135298 -41147191 + AluJ/monomer SINE Alu 3 47 -253 322 238 133 66 chr12 103135515 103135696 -41146793 - MIR SINE MIR -47 215 23 1323 78 11 0 chr12 103135861 103136041 -41146448 - AluSg/x SINE Alu 0 312 131 2131 99 3 6 chr12 103136042 103136355 -41146134 - AluSx SINE Alu 0 312 1 234 62 0 0 chr12 103137514 103137546 -41144943 + (CCG)n Simple_repeat Simple_repeat 3 34 0 526 167 12 0 chr12 103138147 103138231 -41144258 - AluJ/FLAM SINE Alu -226 86 2 2242 73 3 35 chr12 103138594 103138907 -41143582 + AluSc SINE Alu 1 303 -6 196 210 306 0 chr12 103139166 103139228 -41143261 - L2 LINE L2 -4 3309 3229 204 284 78 59 chr12 103139274 103139376 -41143113 - L2 LINE L2 -212 3060 2957 1026 69 23 0 chr12 103139738 103139869 -41142620 + AluSg SINE Alu 1 134 -176 1942 131 7 0 chr12 103139870 103140167 -41142322 + AluSq SINE Alu 1 299 -14 254 254 87 8 chr12 103140168 103140294 -41142195 + Charlie7 DNA MER1_type 2429 2564 -48 889 168 13 0 chr12 103140548 103140703 -41141786 - AluSg/x SINE Alu -20 292 136 324 311 49 37 chr12 103140907 103141071 -41141418 + MER5A DNA MER1_type 14 179 -10 26 0 0 0 chr12 103142045 103142071 -41140418 + GC_rich Low_complexity Low_complexity 1 26 0 2261 188 2 7 chr12 103142480 103142910 -41139579 - L1MB5 LINE L1 -7 6167 5740 2110 114 0 0 chr12 103142920 103143218 -41139271 - AluSx SINE Alu -14 298 1 1737 169 0 7 chr12 103143256 103143557 -41138932 - AluJb SINE Alu -13 299 1 420 239 43 96 chr12 103143559 103143768 -41138721 - L1MC4 LINE L1 -1 8041 7844 247 378 0 22 chr12 103143997 103144132 -41138357 + T-rich Low_complexity Low_complexity 2 133 0 408 341 10 14 chr12 103144031 103144201 -41138288 + CT-rich Low_complexity Low_complexity 3 295 0 192 345 0 0 chr12 103144228 103144338 -41138151 + C-rich Low_complexity Low_complexity 5 114 0 242 328 6 45 chr12 103144412 103144589 -41137900 + CT-rich Low_complexity Low_complexity 1 170 0 233 269 56 74 chr12 103144880 103144988 -41137501 + SST1 Satellite centromeric 87 192 -1371 1936 128 0 19 chr12 103145400 103145719 -41136770 + AluSq SINE Alu 1 313 0 1317 261 10 3 chr12 103145719 103146102 -41136387 + L1M4 LINE L1 2773 3158 -2988 1475 181 0 0 chr12 103146458 103146701 -41135788 + AluSx SINE Alu 1 243 -69 1876 122 20 30 chr12 103146807 103147111 -41135378 + AluSq SINE Alu 1 301 -12 496 184 67 83 chr12 103147124 103147301 -41135188 + HUERS-P1 LTR ERV1 2940 3118 -3145 2219 91 3 7 chr12 103147301 103147608 -41134881 + AluSp SINE Alu 1 306 -7 496 184 67 83 chr12 103147608 103147639 -41134850 + HUERS-P1 LTR ERV1 3118 3590 -2673 392 186 0 0 chr12 103147726 103147796 -41134693 + AluS SINE Alu 1 70 -238 345 196 0 0 chr12 103148420 103148476 -41134013 + Alu SINE Alu 232 287 -14 2259 92 7 3 chr12 103149236 103149539 -41132950 - AluSx SINE Alu -8 304 1 199 92 77 0 chr12 103150315 103150380 -41132109 + (TA)n Simple_repeat Simple_repeat 1 70 0 189 328 17 67 chr12 103150410 103150529 -41131960 - MIR3 SINE MIR -1 207 95 1982 128 3 3 chr12 103151128 103151424 -41131065 - AluSg SINE Alu -14 296 1 1965 126 23 0 chr12 103151436 103151738 -41130751 - AluSg SINE Alu -1 309 1 1810 170 99 7 chr12 103152183 103152564 -41129925 + L1MB3 LINE L1 5738 6145 -57 2026 135 0 0 chr12 103152686 103152997 -41129492 + AluSx SINE Alu 1 311 -1 540 196 93 0 chr12 103153139 103153246 -41129243 + FLAM_C SINE Alu 2 118 -25 2710 163 91 8 chr12 103153287 103153801 -41128688 + MER89 LTR ERV1 2 558 -1 326 244 8 17 chr12 103154273 103154392 -41128097 + AluY SINE Alu 1 118 -183 959 181 0 6 chr12 103154571 103154748 -41127741 - AluJo SINE Alu -16 296 121 2114 124 0 9 chr12 103154759 103155074 -41127415 - AluSx SINE Alu 0 312 1 211 291 11 126 chr12 103155238 103155420 -41127069 + MIR3 SINE MIR 16 176 -32 1382 171 3 120 chr12 103157931 103158265 -41124224 - AluJo SINE Alu -7 295 1 654 240 147 15 chr12 103158299 103158503 -41123986 - MIR SINE MIR -28 234 4 978 247 173 20 chr12 103158692 103159043 -41123446 + L1ME3A LINE L1 5371 5823 -347 2195 113 0 0 chr12 103159043 103159343 -41123146 + AluSx SINE Alu 1 300 -12 978 247 173 20 chr12 103159343 103159493 -41122996 + L1ME3A LINE L1 5823 5949 -221 487 45 0 15 chr12 103159494 103159560 -41122929 + L1PA8 LINE L1 6099 6163 -9 230 227 67 88 chr12 103159789 103159983 -41122506 + L1MC4 LINE L1 7837 8026 -16 311 219 68 82 chr12 103160026 103160172 -41122317 - L1ME LINE L1 -342 5779 5636 331 250 176 16 chr12 103160299 103160487 -41122002 - L1ME LINE L1 -694 5476 5259 1653 180 3 0 chr12 103161812 103162106 -41120383 - AluJo SINE Alu -16 296 2 426 273 88 10 chr12 103162113 103162307 -41120182 - L1ME LINE L1 -298 5823 5615 779 191 0 0 chr12 103162703 103162834 -41119655 + FLAM_C SINE Alu 1 131 -2 236 113 0 113 chr12 103162898 103162969 -41119520 + FRAM/FAM SINE Alu 21 83 -92 21 36 0 0 chr12 103163384 103163412 -41119077 + AT_rich Low_complexity Low_complexity 1 28 0 629 290 79 20 chr12 103163464 103163814 -41118675 + L1ME3 LINE L1 5566 5935 -227 1715 186 0 3 chr12 103163869 103164159 -41118330 + AluJo SINE Alu 1 289 -23 838 156 66 12 chr12 103164750 103164917 -41117572 + AluSg/x SINE Alu 112 287 -23 303 93 0 0 chr12 103164917 103164960 -41117529 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 209 368 85 0 chr12 103166433 103166539 -41115950 + L3 LINE CR1 1404 1518 -59 1124 164 0 27 chr12 103166606 103166831 -41115658 + AluJo SINE Alu 87 305 -7 180 111 0 0 chr12 103166977 103167004 -41115485 + (A)n Simple_repeat Simple_repeat 1 27 0 184 274 0 18 chr12 103167369 103167482 -41115007 + G-rich Low_complexity Low_complexity 2 112 0 256 320 10 10 chr12 103167487 103167584 -41114905 + GA-rich Low_complexity Low_complexity 5 101 0 25 65 0 0 chr12 103167775 103167821 -41114668 + AT_rich Low_complexity Low_complexity 1 46 0 253 383 19 0 chr12 103167912 103168019 -41114470 + MIR SINE MIR 32 140 -122 1283 163 0 0 chr12 103168365 103168586 -41113903 - AluSg SINE Alu -32 278 58 359 330 23 20 chr12 103168689 103168940 -41113549 + CT-rich Low_complexity Low_complexity 1 251 0 1802 138 24 0 chr12 103169227 103169517 -41112972 - L1PA15 LINE L1 -2 6163 5867 203 277 21 0 chr12 103169610 103169657 -41112832 + L2 LINE L2 3008 3055 -258 252 86 0 0 chr12 103169696 103169731 -41112758 + (CA)n Simple_repeat Simple_repeat 1 35 0 1137 112 0 0 chr12 103170788 103170940 -41111549 + AluSg/x SINE Alu 120 271 -39 216 0 0 0 chr12 103170948 103170972 -41111517 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2392 80 0 10 chr12 103171070 103171382 -41111107 + AluSx SINE Alu 1 309 -3 1915 115 35 0 chr12 103171382 103171670 -41110819 + AluSx SINE Alu 1 298 -14 2139 124 0 0 chr12 103171696 103172003 -41110486 + AluSc SINE Alu 1 307 -2 23 0 0 0 chr12 103172039 103172062 -41110427 + AT_rich Low_complexity Low_complexity 1 23 0 1052 161 0 55 chr12 103172549 103172767 -41109722 + AluJo SINE Alu 1 206 -106 180 0 0 0 chr12 103172777 103172797 -41109692 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2099 157 61 0 chr12 103172801 103173144 -41109345 + MSTB LTR MaLR 63 426 0 815 163 0 22 chr12 103173700 103173835 -41108654 - FLAM_C SINE Alu 0 133 2 1806 170 3 19 chr12 103173847 103174164 -41108325 - AluJb SINE Alu 0 312 1 24 53 0 0 chr12 103175066 103175104 -41107385 + AT_rich Low_complexity Low_complexity 1 38 0 1617 181 6 31 chr12 103175136 103175456 -41107033 - AluJb SINE Alu 0 312 1 1313 187 103 22 chr12 103175529 103175802 -41106687 + AluJb SINE Alu 3 297 -15 5205 158 22 15 chr12 103176301 103176495 -41105994 - L1PA16 LINE L1 -9 6157 5966 2221 98 0 7 chr12 103176495 103176791 -41105698 - AluSg SINE Alu -16 294 1 1729 174 30 0 chr12 103176791 103177088 -41105401 - AluJo SINE Alu -6 306 1 5205 158 22 15 chr12 103177088 103178410 -41104079 - L1PA16 LINE L1 -497 5669 4631 2157 98 3 33 chr12 103178594 103178899 -41103590 - AluSg1 SINE Alu -13 296 1 21 82 0 0 chr12 103179932 103179981 -41102508 + AT_rich Low_complexity Low_complexity 1 49 0 238 203 0 62 chr12 103180356 103180420 -41102069 + L1ME3A LINE L1 5601 5660 -461 3492 221 104 16 chr12 103180496 103181598 -41100891 + L1P LINE L1 3322 4520 -1626 5839 186 65 66 chr12 103181875 103182477 -41100012 + L1MB4 LINE L1 3232 3833 -2347 2101 114 3 7 chr12 103182477 103182775 -41099714 + AluSq SINE Alu 1 297 -16 5839 186 65 66 chr12 103182775 103183580 -41098909 + L1MB4 LINE L1 3833 4637 -1543 514 144 22 33 chr12 103183580 103183670 -41098819 + FRAM SINE Alu 76 164 -12 5839 186 65 66 chr12 103183670 103185006 -41097483 + L1MB4 LINE L1 4637 6179 -1 451 234 47 35 chr12 103185178 103185349 -41097140 + L1MCc LINE L1 31 203 -6220 286 224 92 0 chr12 103185995 103186093 -41096396 + L1MCc LINE L1 1273 1379 -5044 926 178 169 78 chr12 103186662 103187022 -41095467 - Charlie1a DNA MER1_type -1061 394 2 266 268 0 93 chr12 103187412 103187509 -41094980 - MIR3 SINE MIR -30 178 91 926 251 146 76 chr12 103187682 103187908 -41094581 + L2 LINE L2 2365 2574 -739 1642 186 3 24 chr12 103187908 103188204 -41094285 + AluJo SINE Alu 3 292 -20 926 251 146 76 chr12 103188204 103188707 -41093782 + L2 LINE L2 2574 3174 -139 2255 98 0 13 chr12 103188707 103189013 -41093476 - AluSc SINE Alu -6 303 2 926 251 146 76 chr12 103189013 103189164 -41093325 + L2 LINE L2 3174 3313 0 199 313 12 48 chr12 103189320 103189403 -41093086 - L2 LINE L2 0 3272 3193 1494 179 99 4 chr12 103189610 103189873 -41092616 - AluJb SINE Alu -18 294 7 1758 153 37 10 chr12 103190488 103190782 -41091707 + AluJo SINE Alu 1 302 -10 648 250 69 26 chr12 103191116 103191420 -41091069 + L1ME3A LINE L1 5629 5945 -225 234 0 0 0 chr12 103191679 103191705 -41090784 + (A)n Simple_repeat Simple_repeat 1 26 0 1969 112 3 18 chr12 103191849 103192135 -41090354 + AluSx SINE Alu 1 282 -30 270 0 0 0 chr12 103192144 103192174 -41090315 + (CACCC)n Simple_repeat Simple_repeat 3 32 0 636 276 141 31 chr12 103192643 103192933 -41089556 - MLT1I LTR MaLR -48 361 40 1672 244 189 5 chr12 103194153 103194820 -41087669 - LTR50 LTR ERVL 0 795 6 2016 141 3 3 chr12 103195528 103195825 -41086664 - AluSc SINE Alu -12 297 1 1893 135 24 17 chr12 103195825 103195982 -41086507 - AluSq SINE Alu -23 290 136 207 0 0 0 chr12 103195982 103196005 -41086484 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2174 99 0 3 chr12 103196005 103196289 -41086200 - AluSg SINE Alu -27 283 1 1893 135 24 17 chr12 103196289 103196418 -41086071 - AluSq SINE Alu -176 137 1 795 147 140 25 chr12 103196626 103196684 -41085805 - AluJo SINE Alu -128 184 134 234 0 0 0 chr12 103196684 103196710 -41085779 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 795 147 140 25 chr12 103196710 103196808 -41085681 - AluJo SINE Alu -178 134 10 378 281 62 0 chr12 103196907 103197035 -41085454 + MLT1L LTR MaLR 179 314 -301 378 331 31 8 chr12 103197568 103197695 -41084794 + MIR SINE MIR 13 142 -120 809 148 16 0 chr12 103197700 103197822 -41084667 - AluJo SINE Alu -176 136 13 281 196 33 65 chr12 103197834 103197926 -41084563 + MIR SINE MIR 168 256 -6 1105 107 75 0 chr12 103198367 103198573 -41083916 - AluSg/x SINE Alu 0 327 110 516 244 106 0 chr12 103198805 103198928 -41083561 - FLAM_A SINE Alu -6 136 1 471 125 0 28 chr12 103198928 103198994 -41083495 - AluS SINE Alu -244 67 4 345 280 0 17 chr12 103199704 103199822 -41082667 + 7SK RNA RNA 1 116 -77 348 318 71 24 chr12 103199837 103200092 -41082397 - L2 LINE L2 -1063 2251 1985 2187 124 0 3 chr12 103200132 103200438 -41082051 - AluSg SINE Alu -5 305 1 268 333 161 6 chr12 103200675 103200837 -41081652 + MIR SINE MIR 42 228 -34 985 198 58 77 chr12 103200879 103201257 -41081232 + MLT1A2 LTR MaLR 1 371 -3 203 0 0 36 chr12 103202025 103202053 -41080436 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 31 26 0 0 chr12 103202537 103202575 -41079914 + AT_rich Low_complexity Low_complexity 1 38 0 234 116 0 0 chr12 103205850 103205893 -41076596 + (CGGGGG)n Simple_repeat Simple_repeat 5 47 0 730 180 0 0 chr12 103207477 103207605 -41074884 + AluSg/x SINE Alu 169 296 -14 2288 98 0 7 chr12 103207649 103207955 -41074534 - AluSq SINE Alu -7 306 3 234 0 0 0 chr12 103208020 103208046 -41074443 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 570 185 8 34 chr12 103208049 103208168 -41074321 - FLAM_C SINE Alu -27 116 1 1306 175 5 0 chr12 103208199 103208422 -41074067 - AluSx SINE Alu -31 281 58 565 209 56 103 chr12 103208935 103209076 -41073413 - MER33 DNA MER1_type -2261 324 178 180 0 0 0 chr12 103209076 103209096 -41073393 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 1948 141 25 0 chr12 103209106 103209383 -41073106 - AluSx SINE Alu -28 284 1 565 209 56 103 chr12 103209383 103209467 -41073022 - MER33 DNA MER1_type -2416 169 106 934 140 37 51 chr12 103209467 103209681 -41072808 - L1MB3 LINE L1 0 6183 5973 565 209 56 103 chr12 103209681 103209783 -41072706 - MER33 DNA MER1_type -2479 106 1 875 144 37 56 chr12 103210038 103210253 -41072236 + L1MB3 LINE L1 5973 6183 0 1035 131 0 0 chr12 103210340 103210477 -41072012 + AluSq/x SINE Alu 1 137 -176 2321 224 47 74 chr12 103210581 103211203 -41071286 - MER77 LTR ERV1 0 605 1 22 0 0 0 chr12 103211943 103211965 -41070524 + AT_rich Low_complexity Low_complexity 1 22 0 445 257 12 0 chr12 103212197 103212361 -41070128 + L1MDb LINE L1 1137 1293 -5103 25 63 0 38 chr12 103212535 103212563 -41069926 + AT_rich Low_complexity Low_complexity 1 29 -47 1494 205 7 17 chr12 103212563 103212851 -41069638 - AluJo SINE Alu -27 285 1 25 63 0 38 chr12 103212851 103212901 -41069588 + AT_rich Low_complexity Low_complexity 29 76 0 505 236 57 0 chr12 103213237 103213377 -41069112 - MER104 DNA Tc2 0 180 33 282 283 124 9 chr12 103213397 103213510 -41068979 + MIR SINE MIR 48 173 -89 180 317 89 65 chr12 103215063 103215186 -41067303 + MIR SINE MIR 9 134 -128 245 262 119 36 chr12 103215192 103215276 -41067213 - MIR SINE MIR -90 118 28 2192 95 7 30 chr12 103215343 103215648 -41066841 - AluSx SINE Alu -14 298 1 1378 167 45 0 chr12 103216718 103216963 -41065526 - Tigger3(Golem) DNA MER2_type 0 3029 2774 529 204 35 63 chr12 103216964 103217106 -41065383 - Tigger3(Golem) DNA MER2_type -2889 140 3 1877 130 20 23 chr12 103217781 103218081 -41064408 + AluSx SINE Alu 1 299 -13 2555 166 72 14 chr12 103218107 103218666 -41063823 + L1MB5 LINE L1 5584 6174 0 1716 120 62 28 chr12 103219704 103220028 -41062461 - L1MB3 LINE L1 -2 6181 5847 806 311 84 7 chr12 103220146 103220455 -41062034 + L2 LINE L2 2153 2485 -829 3642 127 15 2 chr12 103220558 103221078 -41061411 - MER1A DNA MER1_type 0 527 1 1790 163 13 10 chr12 103221178 103221478 -41061011 + AluJb SINE Alu 1 301 -11 542 343 72 0 chr12 103221568 103221749 -41060740 + L2 LINE L2 2512 2705 -609 243 261 90 45 chr12 103221750 103221884 -41060605 - L1MD2 LINE L1 -19 6340 6201 425 243 83 14 chr12 103221900 103222044 -41060445 - L1MD2 LINE L1 -226 6133 5980 723 310 59 40 chr12 103222044 103222265 -41060224 + L2 LINE L2 2687 2902 -411 1028 193 16 5 chr12 103222265 103222452 -41060037 + MER5A DNA MER1_type 1 189 0 723 310 59 40 chr12 103222452 103222806 -41059683 + L2 LINE L2 2902 3288 -25 1016 193 0 0 chr12 103222982 103223148 -41059341 - FRAM SINE Alu -11 165 1 2276 116 3 0 chr12 103224237 103224539 -41057950 - AluSx SINE Alu -9 303 1 1792 140 0 83 chr12 103225538 103225874 -41056615 - AluJb SINE Alu -4 308 1 356 280 37 46 chr12 103225897 103226115 -41056374 - L1MEd LINE L1 -5281 838 623 1718 216 48 0 chr12 103226115 103226508 -41055981 - MER63C DNA MER1_type -1 929 518 571 171 150 29 chr12 103226524 103226664 -41055825 - MER58C DNA MER1_type -15 200 44 505 238 168 16 chr12 103226685 103226929 -41055560 - MER63C DNA MER1_type -406 524 244 2981 37 0 11 chr12 103227053 103227429 -41055060 - L1PA2 LINE L1 -1 6154 5783 4089 157 29 15 chr12 103227837 103229190 -41053299 + L1PA16 LINE L1 4615 5972 -194 2255 123 0 7 chr12 103229190 103229499 -41052990 + AluSq SINE Alu 1 307 -6 1187 144 0 11 chr12 103229508 103229689 -41052800 + AluSg/x SINE Alu 134 312 0 2183 103 0 7 chr12 103229825 103230116 -41052373 + AluSx SINE Alu 1 289 -23 1344 90 11 5 chr12 103230119 103230307 -41052182 + AluY SINE Alu 120 308 -3 573 251 0 11 chr12 103230355 103230530 -41051959 + L1MC/D LINE L1 5337 5509 -2299 1486 194 53 39 chr12 103230599 103230740 -41051749 - AluJo SINE Alu -22 290 152 2285 120 0 0 chr12 103230740 103231048 -41051441 - AluSq SINE Alu -5 308 1 1486 194 53 39 chr12 103231048 103231190 -41051299 - AluJo SINE Alu -160 152 3 40513 34 26 3 chr12 103231310 103236748 -41045741 - L1P1 LINE L1 -589 5566 1 523 313 68 23 chr12 103236749 103237056 -41045433 - L1MEd LINE L1 -5730 389 69 21 82 0 0 chr12 103237473 103237522 -41044967 + AT_rich Low_complexity Low_complexity 1 49 0 337 378 138 12 chr12 103237622 103237942 -41044547 - L2 LINE L2 -16 3256 2897 437 181 14 0 chr12 103238075 103238147 -41044342 + AluS SINE Alu 1 73 -240 779 37 102 0 chr12 103238147 103238255 -41044234 + MER85 DNA T2_type 21 139 0 230 81 27 0 chr12 103238302 103238339 -41044150 + (CAAAA)n Simple_repeat Simple_repeat 5 42 0 921 151 62 0 chr12 103238339 103238485 -41044004 + AluJb SINE Alu 138 292 -20 441 295 39 0 chr12 103238817 103238946 -41043543 + MIR SINE MIR 20 153 -55 1324 131 8 14 chr12 103240398 103240650 -41041839 - AluJb SINE Alu -14 298 1 570 266 13 49 chr12 103241953 103242179 -41040310 - L1ME3A LINE L1 -12 6158 5941 24 0 0 0 chr12 103242345 103242369 -41040120 + AT_rich Low_complexity Low_complexity 1 24 0 1607 214 63 62 chr12 103242440 103243147 -41039342 - L1ME3A LINE L1 -250 5920 5213 258 323 88 62 chr12 103243300 103243773 -41038716 - L2 LINE L2 -188 3084 2589 2049 116 7 14 chr12 103243915 103244244 -41038245 - AluSx SINE Alu 0 312 1 1573 193 0 64 chr12 103244271 103244582 -41037907 - AluJo SINE Alu -21 291 1 201 39 0 0 chr12 103244797 103244823 -41037666 + (TG)n Simple_repeat Simple_repeat 1 26 0 1976 147 7 0 chr12 103244823 103245102 -41037387 - AluSx SINE Alu -31 281 1 2354 76 3 0 chr12 103245386 103245677 -41036812 - AluSp SINE Alu -21 292 1 22 0 0 0 chr12 103246166 103246188 -41036301 + AT_rich Low_complexity Low_complexity 1 22 0 825 219 35 12 chr12 103246520 103246689 -41035800 + MER5B DNA MER1_type 1 173 -5 2461 93 3 0 chr12 103246819 103247131 -41035358 - AluSp SINE Alu 0 313 1 2192 96 0 27 chr12 103247139 103247440 -41035049 - AluSx SINE Alu -18 294 2 316 312 172 0 chr12 103247903 103248060 -41034429 + MIR SINE MIR 28 211 -51 232 218 98 98 chr12 103248070 103248152 -41034337 - MLT1K LTR MaLR -15 573 492 2283 107 0 3 chr12 103248152 103248451 -41034038 + AluSx SINE Alu 1 298 -14 232 218 98 98 chr12 103248451 103248542 -41033947 - MLT1K LTR MaLR -95 493 400 470 265 110 20 chr12 103248669 103248869 -41033620 - MLT1K LTR MaLR -347 241 24 2273 110 3 0 chr12 103249270 103249570 -41032919 + AluSq SINE Alu 1 301 -12 1703 154 44 37 chr12 103249603 103249756 -41032733 - AluJb SINE Alu -10 302 145 2406 68 3 0 chr12 103249756 103250049 -41032440 - AluSg SINE Alu -16 294 1 1703 154 44 37 chr12 103250049 103250193 -41032296 - AluJb SINE Alu -167 145 3 2130 108 34 7 chr12 103250266 103250563 -41031926 - AluSg SINE Alu -5 305 1 331 312 169 35 chr12 103250751 103251123 -41031366 + L2 LINE L2 2115 2536 -778 247 232 61 61 chr12 103251281 103251363 -41031126 - L2 LINE L2 -1 3271 3190 2238 104 3 3 chr12 103252055 103252354 -41030135 + AluSx SINE Alu 1 299 -13 421 251 43 37 chr12 103252523 103252686 -41029803 - MER103 DNA DNA 0 166 3 755 211 61 28 chr12 103252876 103253056 -41029433 + MER5A DNA MER1_type 4 189 0 235 0 0 54 chr12 103254101 103254138 -41028351 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2076 89 4 7 chr12 103254141 103254412 -41028077 - AluSx SINE Alu -26 286 17 1823 161 26 0 chr12 103254575 103254879 -41027610 - AluSx SINE Alu 0 312 1 2461 90 3 0 chr12 103254889 103255199 -41027290 - AluSp SINE Alu -2 311 1 2376 92 0 3 chr12 103255208 103255511 -41026978 - AluSp SINE Alu -10 303 2 316 312 172 0 chr12 103255974 103256131 -41026358 + MIR SINE MIR 28 211 -51 232 218 98 98 chr12 103256141 103256223 -41026266 - MLT1K LTR MaLR -15 573 492 2283 107 0 3 chr12 103256223 103256522 -41025967 + AluSx SINE Alu 1 298 -14 232 218 98 98 chr12 103256522 103256613 -41025876 - MLT1K LTR MaLR -95 493 400 679 261 233 3 chr12 103256919 103257245 -41025244 - LTR50 LTR ERVL -389 406 6 2062 144 7 0 chr12 103257953 103258251 -41024238 - AluSx SINE Alu -12 300 1 389 168 239 9 chr12 103258324 103258437 -41024052 - MER58C DNA MER1_type -11 204 66 2388 83 3 0 chr12 103258901 103259203 -41023286 + AluSx SINE Alu 1 303 -9 2047 121 3 10 chr12 103259298 103259588 -41022901 + AluY SINE Alu 1 288 -23 1190 136 0 16 chr12 103259590 103259774 -41022715 + AluSg/x SINE Alu 118 298 -12 1058 223 85 3 chr12 103260555 103260860 -41021629 - L1ME LINE L1 -463 5703 5374 22 56 0 0 chr12 103261447 103261483 -41021006 + AT_rich Low_complexity Low_complexity 1 36 0 249 303 30 86 chr12 103261605 103261803 -41020686 - MIR SINE MIR -26 236 50 695 191 8 24 chr12 103262108 103262234 -41020255 + FLAM_A SINE Alu 1 124 -9 305 267 51 34 chr12 103262978 103263154 -41019335 - MLT1K LTR MaLR -386 202 24 2399 104 0 0 chr12 103263555 103263864 -41018625 + AluSx SINE Alu 1 309 -3 1310 201 95 22 chr12 103263916 103264285 -41018204 + L1ME1 LINE L1 5752 6147 -19 2268 101 3 7 chr12 103264527 103264825 -41017664 - AluSc SINE Alu -12 297 1 195 42 0 0 chr12 103265444 103265468 -41017021 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1819 190 3 0 chr12 103265678 103265978 -41016511 + AluJo SINE Alu 1 301 -11 494 322 104 10 chr12 103265986 103266188 -41016301 + MIR SINE MIR 35 255 -7 2102 110 3 7 chr12 103266679 103266969 -41015520 - AluSx SINE Alu -23 289 1 252 303 109 42 chr12 103267004 103267123 -41015366 - L2 LINE L2 -4 3309 3183 24 0 0 0 chr12 103267836 103267860 -41014629 + AT_rich Low_complexity Low_complexity 1 24 0 474 284 45 22 chr12 103268857 103268991 -41013498 + MIR SINE MIR 47 183 -79 2345 104 0 13 chr12 103269196 103269512 -41012977 + AluSx SINE Alu 1 312 0 237 119 0 0 chr12 103270048 103270090 -41012399 + (GTTTG)n Simple_repeat Simple_repeat 3 44 0 350 323 21 0 chr12 103270199 103270295 -41012194 + MIR SINE MIR 48 145 -117 1796 167 17 0 chr12 103270301 103270588 -41011901 - AluJo SINE Alu -20 292 1 315 306 95 31 chr12 103271554 103271848 -41010641 - Charlie4 DNA MER1_type -1105 856 544 970 76 46 0 chr12 103272584 103272715 -41009774 - AluSg/x SINE Alu -11 301 165 752 162 0 28 chr12 103272772 103272914 -41009575 + FRAM SINE Alu 38 175 -1 1133 131 0 25 chr12 103272967 103273127 -41009362 - AluSq SINE Alu -157 156 1 1301 98 0 0 chr12 103273190 103273354 -41009135 + AluSp SINE Alu 131 294 -19 220 246 46 31 chr12 103273406 103273471 -41009018 - L2 LINE L2 -6 3307 3242 2212 109 3 10 chr12 103273593 103273897 -41008592 - AluSq SINE Alu -11 302 1 756 260 33 6 chr12 103274157 103274338 -41008151 - MIR SINE MIR -70 192 7 806 219 6 6 chr12 103274664 103274828 -41007661 + FRAM SINE Alu 3 166 0 918 117 0 0 chr12 103274949 103275069 -41007420 - FLAM_C SINE Alu -23 120 1 215 185 54 120 chr12 103275090 103275182 -41007307 + L2 LINE L2 3186 3271 -1 2144 112 0 26 chr12 103276025 103276133 -41006356 + AluSx SINE Alu 1 110 -202 2400 99 108 6 chr12 103276133 103276475 -41006014 - MER51B LTR ERV1 0 377 1 2144 112 0 26 chr12 103276475 103276669 -41005820 + AluSx SINE Alu 110 295 -17 1762 109 0 28 chr12 103276763 103277011 -41005478 + AluSx SINE Alu 63 303 -9 393 22 0 0 chr12 103277110 103277156 -41005333 + (TA)n Simple_repeat Simple_repeat 2 47 0 548 172 343 6 chr12 103277214 103277383 -41005106 + MIR SINE MIR 3 228 -34 275 362 39 24 chr12 103277821 103277948 -41004541 - L2 LINE L2 -8 3264 3136 2514 81 0 0 chr12 103277974 103278284 -41004205 + AluSg SINE Alu 1 310 0 992 298 63 25 chr12 103278374 103278770 -41003719 + L2 LINE L2 2898 3308 -5 207 348 0 76 chr12 103278840 103278958 -41003531 - L2 LINE L2 -273 2999 2891 2232 118 3 0 chr12 103279280 103279577 -41002912 - AluSq SINE Alu -15 298 1 283 317 202 0 chr12 103279753 103279857 -41002632 + L2 LINE L2 3141 3265 -7 2216 107 0 13 chr12 103279913 103280212 -41002277 + AluSx SINE Alu 1 295 -17 290 317 10 0 chr12 103280655 103280759 -41001730 + L2 LINE L2 1893 1997 -1317 2003 119 5 109 chr12 103280775 103280857 -41001632 - L1MB3 LINE L1 -47 6136 6047 1562 174 15 64 chr12 103280857 103281185 -41001304 - AluJo SINE Alu 0 312 1 2003 119 5 109 chr12 103281185 103281323 -41001166 - L1MB3 LINE L1 -136 6047 5896 2182 134 0 0 chr12 103281323 103281636 -41000853 - AluSq SINE Alu 0 313 1 2003 119 5 109 chr12 103281636 103281788 -41000701 - L1MB3 LINE L1 -287 5896 5807 2244 103 23 0 chr12 103281788 103282089 -41000400 + AluSq SINE Alu 1 308 -5 2003 119 5 109 chr12 103282089 103282127 -41000362 - L1MB3 LINE L1 -376 5807 5767 351 318 71 24 chr12 103282129 103282384 -41000105 + L2 LINE L2 1985 2251 -1063 384 280 0 17 chr12 103282399 103282517 -40999972 - 7SK RNA RNA -77 116 1 496 125 0 28 chr12 103283231 103283297 -40999192 + AluS SINE Alu 4 67 -244 560 244 106 0 chr12 103283297 103283420 -40999069 + FLAM_A SINE Alu 1 136 -6 1107 107 75 0 chr12 103283651 103283857 -40998632 + AluSg/x SINE Alu 112 329 0 279 196 33 65 chr12 103284298 103284390 -40998099 - MIR SINE MIR -6 256 168 842 148 16 0 chr12 103284402 103284524 -40997965 + AluJo SINE Alu 13 136 -176 365 318 36 0 chr12 103284529 103284639 -40997850 - MIR SINE MIR -120 142 29 431 281 62 0 chr12 103285189 103285317 -40997172 - MLT1L LTR MaLR -301 314 179 1661 164 85 0 chr12 103285409 103285515 -40996974 + AluJo SINE Alu 2 98 -214 252 0 0 0 chr12 103285515 103285543 -40996946 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1661 164 85 0 chr12 103285543 103285717 -40996772 + AluJo SINE Alu 98 306 -6 943 185 60 53 chr12 103285776 103285904 -40996585 - MER21A LTR ERV1 -422 441 315 2035 125 10 3 chr12 103285904 103286201 -40996288 - AluSq SINE Alu -14 299 1 943 185 60 53 chr12 103286201 103286422 -40996067 - MER21A LTR ERV1 -548 315 68 1559 100 14 5 chr12 103286423 103286643 -40995846 + AluSx SINE Alu 1 222 -90 4691 88 33 32 chr12 103286643 103286975 -40995514 + PABL_A LTR ERV1 1 331 -329 2157 123 0 3 chr12 103286975 103287277 -40995212 + AluSg SINE Alu 1 301 -9 825 191 83 6 chr12 103287280 103287437 -40995052 + FAM SINE Alu 1 169 -6 4691 88 33 32 chr12 103287437 103287759 -40994730 + PABL_A LTR ERV1 332 660 0 719 67 0 0 chr12 103287759 103287849 -40994640 + AluSp/q SINE Alu 219 308 -5 557 107 0 0 chr12 103287849 103287924 -40994565 - MER21A LTR ERV1 -856 75 1 326 162 73 0 chr12 103287924 103287992 -40994497 - MER21A-int LTR ERV1 0 4191 4119 863 144 35 69 chr12 103288022 103288196 -40994293 - MER21A-int LTR ERV1 -54 4137 3970 2292 105 10 13 chr12 103288197 103288510 -40993979 + AluSx SINE Alu 1 312 0 2107 111 34 0 chr12 103288510 103288808 -40993681 + AluSp SINE Alu 1 308 -5 2153 135 0 3 chr12 103288935 103289247 -40993242 - AluSq SINE Alu -2 311 1 1747 164 14 7 chr12 103289740 103290026 -40992463 + AluJb SINE Alu 3 290 -22 1498 125 14 5 chr12 103290254 103290470 -40992019 + AluSc SINE Alu 1 218 -91 210 355 0 0 chr12 103290585 103290661 -40991828 + T-rich Low_complexity Low_complexity 1 76 0 225 83 0 0 chr12 103290680 103290716 -40991773 + (T)n Simple_repeat Simple_repeat 1 36 0 189 74 0 0 chr12 103290807 103290834 -40991655 + (T)n Simple_repeat Simple_repeat 1 27 0 1818 158 0 0 chr12 103291257 103291535 -40990954 - AluJo SINE Alu -32 280 3 1664 165 10 30 chr12 103291695 103291992 -40990497 + AluJo SINE Alu 3 293 -19 599 225 96 0 chr12 103292594 103292772 -40989717 - L1MC4a LINE L1 -1944 5864 5670 2886 145 69 12 chr12 103292805 103293314 -40989175 + L1MC3 LINE L1 6644 7181 -604 537 117 180 0 chr12 103293310 103293421 -40989068 + L1MC3 LINE L1 7655 7785 0 * 2710 45 0 0 chr12 103293431 103293741 -40988748 + AluY SINE Alu 1 310 -1 759 215 92 39 chr12 103293770 103294030 -40988459 - L1MC4a LINE L1 -2252 5556 5283 310 339 31 8 chr12 103294131 103294258 -40988231 - L1MC4a LINE L1 -1013 5133 5004 1405 171 86 65 chr12 103294997 103295383 -40987106 - MER110A LTR ERV1 -74 394 1 229 245 0 0 chr12 103295545 103295594 -40986895 - L2 LINE L2 -1013 2301 2253 1664 84 0 5 chr12 103295598 103295811 -40986678 + AluSq SINE Alu 23 234 -79 812 80 0 0 chr12 103295811 103295911 -40986578 + AluSp/q SINE Alu 205 304 -9 318 284 117 49 chr12 103295911 103296175 -40986314 - L2 LINE L2 -1055 2259 1978 360 317 14 7 chr12 103296303 103296445 -40986044 - L2 LINE L2 -1947 1367 1225 181 254 209 0 chr12 103297376 103297443 -40985046 - MIR SINE MIR -6 256 176 2073 93 0 90 chr12 103297460 103297783 -40984706 - AluSg SINE Alu -16 294 1 2075 120 0 22 chr12 103297800 103298117 -40984372 - AluSq SINE Alu -3 310 1 297 68 0 0 chr12 103299388 103299432 -40983057 + (CA)n Simple_repeat Simple_repeat 2 45 0 1053 116 0 0 chr12 103299667 103299813 -40982676 - AluSq SINE Alu -7 306 161 753 101 0 0 chr12 103299813 103299912 -40982577 - AluSq SINE Alu -214 99 1 25 0 0 0 chr12 103299948 103299973 -40982516 + AT_rich Low_complexity Low_complexity 1 25 0 294 116 0 0 chr12 103300479 103300522 -40981967 - Charlie1b DNA MER1_type -5 518 476 1101 158 172 13 chr12 103300570 103300887 -40981602 - Charlie1b DNA MER1_type -147 376 1 274 310 78 9 chr12 103301067 103301183 -40981306 + MIR SINE MIR 73 196 -66 895 83 0 0 chr12 103301515 103301624 -40980865 - AluSg SINE Alu -201 109 1 1724 155 29 4 chr12 103301627 103301927 -40980562 - AluSx SINE Alu 0 307 1 4715 224 124 15 chr12 103302951 103303240 -40979249 - L1M4 LINE L1 -3595 2787 2531 2130 137 0 0 chr12 103303240 103303540 -40978949 - AluSc SINE Alu -9 300 1 1880 135 24 17 chr12 103303540 103303697 -40978792 - AluSq SINE Alu -23 290 136 207 0 0 0 chr12 103303697 103303720 -40978769 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2188 99 0 3 chr12 103303720 103304004 -40978485 - AluSg SINE Alu -27 283 1 1880 135 24 17 chr12 103304004 103304133 -40978356 - AluSq SINE Alu -176 137 1 4715 224 124 15 chr12 103304133 103304606 -40977883 - L1M4 LINE L1 -3851 2531 2111 5785 76 11 18 chr12 103304606 103305367 -40977122 + L1PA10 LINE L1 5413 6167 -1 4715 224 124 15 chr12 103305367 103306578 -40975911 - L1M4 LINE L1 -4271 2111 580 308 331 93 55 chr12 103306674 103307040 -40975449 - L1M4 LINE L1 -5973 411 32 2138 106 10 3 chr12 103307200 103307492 -40974997 - AluSp SINE Alu -19 294 1 216 0 0 0 chr12 103307590 103307614 -40974875 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1194 112 0 0 chr12 103307622 103307774 -40974715 - AluSg/x SINE Alu -39 271 120 252 86 0 0 chr12 103308830 103308865 -40973624 + (TG)n Simple_repeat Simple_repeat 1 35 0 200 277 21 0 chr12 103308904 103308951 -40973538 - L2 LINE L2 -258 3055 3008 1906 136 24 3 chr12 103309040 103309334 -40973155 + L1PA15 LINE L1 5864 6163 -2 747 199 0 29 chr12 103310000 103310136 -40972353 - FLAM_C SINE Alu -10 133 2 325 374 32 0 chr12 103310230 103310353 -40972136 + L2 LINE L2 1178 1304 -2010 1782 152 3 20 chr12 103310400 103310696 -40971793 + AluJo SINE Alu 1 291 -21 1056 198 22 8 chr12 103310909 103311160 -40971329 - L1MC3 LINE L1 -11 7984 7528 2375 103 0 6 chr12 103311709 103312021 -40970468 + AluSg SINE Alu 1 310 0 914 127 8 22 chr12 103312382 103312516 -40969973 + FLAM_C SINE Alu 2 133 0 22 0 0 0 chr12 103313275 103313297 -40969192 + AT_rich Low_complexity Low_complexity 1 22 0 1565 163 43 46 chr12 103313457 103313783 -40968706 - MER44D DNA MER2_type -8 601 7 2389 94 0 0 chr12 103313854 103314153 -40968336 + AluSc SINE Alu 1 299 -10 291 164 18 0 chr12 103314838 103314893 -40967596 + L1MC3 LINE L1 7507 7562 -223 321 170 0 0 chr12 103314996 103315049 -40967440 - MER58 DNA MER1_type -119 96 44 619 238 168 16 chr12 103315070 103315314 -40967175 - MER63C DNA MER1_type -406 524 244 24552 48 5 9 chr12 103315438 103319231 -40963258 - L1PA2 LINE L1 -1 6154 2374 596 184 10 0 chr12 103319541 103319644 -40962845 - MER2 DNA MER2_type -241 104 1 2037 127 0 0 chr12 103321046 103321391 -40961098 + AluSx SINE Alu 1 345 0 1263 123 6 0 chr12 103321918 103322225 -40960264 + AluSg/x SINE Alu 131 438 0 1634 159 20 41 chr12 103322275 103322570 -40959919 + AluJo SINE Alu 2 290 -22 209 32 0 32 chr12 103322572 103322603 -40959886 + (GGGGA)n Simple_repeat Simple_repeat 4 33 0 221 254 15 30 chr12 103322761 103322828 -40959661 + L2 LINE L2 3248 3313 0 2396 80 0 3 chr12 103323098 103323397 -40959092 - AluSq SINE Alu -15 298 1 216 0 0 0 chr12 103323413 103323437 -40959052 + (A)n Simple_repeat Simple_repeat 1 24 0 4198 105 46 82 chr12 103323497 103324304 -40958185 - LTR1 LTR ERV1 -7 778 1 1809 125 8 0 chr12 103324304 103324568 -40957921 + AluSq SINE Alu 31 296 -17 258 220 275 0 chr12 103324569 103324660 -40957829 + MIR SINE MIR 24 139 -123 372 348 7 7 chr12 103324665 103324820 -40957669 - HERV16 LTR ERVL -3785 1211 1057 1676 118 115 14 chr12 103325512 103325791 -40956698 - AluSg1 SINE Alu -2 307 1 2062 121 4 0 chr12 103326233 103326513 -40955976 + AluSx SINE Alu 1 281 -31 510 98 0 0 chr12 103326452 103326513 -40955976 + AluSg/x SINE Alu 218 311 0 265 30 0 0 chr12 103326513 103326546 -40955943 + (CAA)n Simple_repeat Simple_repeat 1 180 0 729 211 0 0 chr12 103326561 103326675 -40955814 + FLAM_A SINE Alu 2 115 -18 419 303 48 7 chr12 103326878 103327023 -40955466 + MLT1J LTR MaLR 290 440 -71 2220 109 3 3 chr12 103327028 103327331 -40955158 + AluSc SINE Alu 1 303 -6 2221 113 3 0 chr12 103327454 103327754 -40954735 + AluSq SINE Alu 1 301 -12 326 295 24 77 chr12 103327803 103327895 -40954594 + L1MC4a LINE L1 5649 5628 -538 2417 87 3 0 chr12 103327895 103328194 -40954295 + AluSp SINE Alu 3 302 -11 326 295 24 77 chr12 103328194 103328380 -40954109 + L1MC4a LINE L1 5627 5821 -345 722 47 0 0 chr12 103328610 103328696 -40953793 - L1PA12 LINE L1 0 6168 6083 22 35 0 0 chr12 103328723 103328752 -40953737 + AT_rich Low_complexity Low_complexity 1 29 0 1824 145 31 10 chr12 103328762 103329044 -40953445 + AluSx SINE Alu 1 291 -21 671 64 0 11 chr12 103329044 103329138 -40953351 + (GGGGA)n Simple_repeat Simple_repeat 5 97 0 4213 244 49 50 chr12 103329180 103329763 -40952726 + L1 LINE L1 2633 3215 -2931 1917 122 4 0 chr12 103329763 103330034 -40952455 + AluSx SINE Alu 41 312 0 4213 244 49 50 chr12 103330034 103330651 -40951838 + L1 LINE L1 3215 3834 -2312 2176 115 3 0 chr12 103330651 103330947 -40951542 + AluSq SINE Alu 1 297 -16 4213 244 49 50 chr12 103330947 103331259 -40951230 + L1 LINE L1 3834 4145 -2001 2120 131 3 0 chr12 103331761 103332059 -40950430 - AluSx SINE Alu -13 299 1 582 283 127 28 chr12 103332301 103332819 -40949670 - MLT1L LTR MaLR -9 606 6 2114 118 26 3 chr12 103333621 103333927 -40948562 - AluSq SINE Alu 0 313 1 1404 174 44 7 chr12 103334046 103334321 -40948168 - AluJo SINE Alu -27 285 1 235 321 115 18 chr12 103334649 103334814 -40947675 + L2 LINE L2 2853 3033 -239 1347 78 11 0 chr12 103335363 103335542 -40946947 + AluY SINE Alu 129 309 -2 630 249 209 51 chr12 103335590 103335834 -40946655 + L1MC4a LINE L1 5337 5541 -2267 1445 194 53 39 chr12 103335834 103335975 -40946514 - AluJo SINE Alu -22 290 152 2279 120 0 0 chr12 103335975 103336283 -40946206 - AluSq SINE Alu -5 308 1 1445 194 53 39 chr12 103336283 103336425 -40946064 - AluJo SINE Alu -160 152 3 630 249 209 51 chr12 103336425 103336554 -40945935 + L1MC4a LINE L1 5541 5769 -2039 * 4409 44 1 2 chr12 103336539 103337259 -40945230 - L1PA5 LINE L1 -582 5572 4854 5090 45 0 0 chr12 103337259 103337810 -40944679 + L1PA5 LINE L1 5579 6150 -4 362 329 34 0 chr12 103337811 103337957 -40944532 + L1MC4a LINE L1 5745 5895 -1913 1998 135 84 28 chr12 103337994 103338349 -40944140 + THE1C LTR MaLR 1 375 0 2391 87 10 0 chr12 103338532 103338841 -40943648 + AluSp SINE Alu 1 312 -1 2267 103 0 7 chr12 103339379 103339715 -40942774 - AluSx SINE Alu 0 312 1 1034 192 0 0 chr12 103339726 103339898 -40942591 - L1MC1 LINE L1 -2 6331 6160 2416 75 10 0 chr12 103340329 103340635 -40941854 + AluSq SINE Alu 1 309 -4 2206 110 0 3 chr12 103340884 103341176 -40941313 + AluSq SINE Alu 2 292 -21 1783 158 0 42 chr12 103341346 103341657 -40940832 + AluJb SINE Alu 6 303 -9 2236 124 0 0 chr12 103343073 103343380 -40939109 - AluSx SINE Alu -5 307 1 225 0 0 0 chr12 103343622 103343647 -40938842 + (T)n Simple_repeat Simple_repeat 1 25 0 2210 109 0 0 chr12 103344046 103344339 -40938150 - AluSx SINE Alu -19 293 1 434 235 0 34 chr12 103344489 103344608 -40937881 + LTR16A LTR ERVL 336 450 0 2427 85 0 0 chr12 103344799 103345106 -40937383 - AluSx SINE Alu -5 307 1 2170 137 0 3 chr12 103345378 103345685 -40936804 - AluSx SINE Alu -1 311 6 10164 180 31 21 chr12 103345826 103346021 -40936468 + L1PA16 LINE L1 3036 3227 -2939 1861 118 14 14 chr12 103346021 103346308 -40936181 + AluSx SINE Alu 1 287 -25 10164 180 31 21 chr12 103346308 103346319 -40936170 + L1PA16 LINE L1 3227 3236 -2930 2455 57 0 10 chr12 103346319 103346615 -40935874 + AluY SINE Alu 1 293 -18 180 0 0 0 chr12 103346618 103346638 -40935851 + (CAA)n Simple_repeat Simple_repeat 2 21 0 10164 180 31 21 chr12 103346638 103347093 -40935396 + L1PA16 LINE L1 3237 3686 -2480 213 94 0 0 chr12 103347093 103347125 -40935364 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 10164 180 31 21 chr12 103347125 103347819 -40934670 + L1PA16 LINE L1 3686 4371 -1795 390 21 0 0 chr12 103347819 103347866 -40934623 + (CA)n Simple_repeat Simple_repeat 2 48 0 10164 180 31 21 chr12 103347866 103349415 -40933074 + L1PA16 LINE L1 4371 5970 -196 2274 113 0 0 chr12 103349415 103349707 -40932782 + AluSq SINE Alu 1 292 -21 10164 180 31 21 chr12 103349707 103349811 -40932678 + L1PA16 LINE L1 5970 6071 -95 468 0 0 0 chr12 103349997 103350049 -40932440 + (TA)n Simple_repeat Simple_repeat 2 53 0 2277 105 19 3 chr12 103350141 103350456 -40932033 + L1PA14 LINE L1 5842 6161 0 25 31 0 0 chr12 103350915 103350947 -40931542 + AT_rich Low_complexity Low_complexity 1 32 0 2281 103 0 22 chr12 103351243 103351562 -40930927 - AluSx SINE Alu 0 312 1 510 270 64 56 chr12 103351574 103351931 -40930558 - MLT1J LTR MaLR -112 399 1 257 211 0 158 chr12 103351934 103351966 -40930523 - L1ME LINE L1 -411 5753 5718 2203 111 0 3 chr12 103351966 103352263 -40930226 - AluSg SINE Alu -10 300 5 257 211 0 158 chr12 103352263 103352325 -40930164 - L1ME LINE L1 -446 5718 5674 1276 135 0 76 chr12 103352439 103352676 -40929813 - AluJo SINE Alu -10 302 84 230 239 104 0 chr12 103352676 103352743 -40929746 - L1ME LINE L1 -564 5557 5484 404 300 143 14 chr12 103352800 103353080 -40929409 - L2 LINE L2 -1415 1899 1584 186 43 0 0 chr12 103353190 103353213 -40929276 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1576 181 0 0 chr12 103353239 103353493 -40928996 - AluJo SINE Alu -58 254 1 365 228 20 50 chr12 103353530 103353631 -40928858 - L2 LINE L2 -2 3270 3173 2274 98 3 0 chr12 103354098 103354393 -40928096 - AluSc SINE Alu -13 296 1 2441 96 0 0 chr12 103354644 103354957 -40927532 - AluSq SINE Alu 0 313 1 2571 52 0 7 chr12 103354971 103355277 -40927212 - AluY SINE Alu -7 304 1 1216 140 0 16 chr12 103355416 103355609 -40926880 - AluSg/x SINE Alu -3 307 118 2188 103 0 7 chr12 103355611 103355902 -40926587 - AluSx SINE Alu -23 289 1 1272 124 0 11 chr12 103356038 103356224 -40926265 - AluSg/x SINE Alu 0 310 127 2112 126 0 10 chr12 103356228 103356537 -40925952 - AluSg SINE Alu -4 306 1 351 279 58 77 chr12 103356983 103357191 -40925298 + MIR3 SINE MIR 4 207 -1 2175 164 70 43 chr12 103357583 103357632 -40924857 - MSTB LTR MaLR 0 426 380 1951 99 72 0 chr12 103357632 103357916 -40924573 - AluSx SINE Alu 0 303 1 2175 164 70 43 chr12 103357916 103358280 -40924209 - MSTB LTR MaLR -46 380 1 430 189 142 24 chr12 103358389 103358516 -40923973 + MIR SINE MIR 89 230 -32 544 235 17 0 chr12 103358949 103359068 -40923421 + MER94 DNA DNA 2 122 -12 317 331 8 16 chr12 103359263 103359390 -40923099 + HAL1 LINE L1 825 950 -1557 367 193 96 59 chr12 103359496 103359631 -40922858 + MER53 DNA DNA 1 140 -49 1450 166 106 7 chr12 103359637 103359921 -40922568 - AluJo SINE Alu 0 312 1 2301 108 0 0 chr12 103360134 103360429 -40922060 - AluSx SINE Alu -17 295 1 227 279 145 6 chr12 103360442 103360614 -40921875 + L1MC/D LINE L1 5633 5828 -1980 735 262 93 4 chr12 103360669 103360906 -40921583 - MIR SINE MIR -3 259 2 2562 50 0 25 chr12 103361003 103361321 -40921168 + AluY SINE Alu 1 310 -1 2242 92 3 0 chr12 103362689 103362973 -40919516 + AluSp SINE Alu 18 302 -11 472 248 8 26 chr12 103363737 103363854 -40918635 - L2 LINE L2 0 3313 3199 2347 108 0 0 chr12 103363964 103364269 -40918220 - AluSg SINE Alu -5 305 1 339 165 0 126 chr12 103364525 103364570 -40917919 - MIR SINE MIR -1 261 235 2157 121 3 0 chr12 103364570 103364868 -40917621 - AluSx SINE Alu -13 299 1 339 165 0 126 chr12 103364868 103364925 -40917564 - MIR SINE MIR -27 235 172 1365 261 10 3 chr12 103364985 103365368 -40917121 - L1MDa LINE L1 -2988 3552 3167 1863 133 0 14 chr12 103365368 103365653 -40916836 - AluSq SINE Alu 0 313 33 3166 218 215 13 chr12 103365653 103367066 -40915423 - L1MDa LINE L1 -4616 1924 92 2141 113 0 52 chr12 103367066 103367393 -40915096 - AluSg SINE Alu 0 310 1 3166 218 215 13 chr12 103367393 103367487 -40915002 - L1MDa LINE L1 -6448 92 18 841 227 124 44 chr12 103367497 103367912 -40914577 - LTR33A LTR ERVL -44 479 1 399 279 31 9 chr12 103367915 103368046 -40914443 - MIR SINE MIR -53 155 22 865 260 74 13 chr12 103368293 103368524 -40913965 - MIR SINE MIR -13 249 5 2231 99 20 0 chr12 103368758 103369052 -40913437 + AluSq SINE Alu 5 304 -9 1932 144 10 10 chr12 103369063 103369362 -40913127 + AluSx SINE Alu 1 299 -13 547 284 127 13 chr12 103369971 103370207 -40912282 - Charlie2 DNA MER1_type -2519 263 1 449 300 18 0 chr12 103370296 103370406 -40912083 - L2 LINE L2 -593 2721 2610 876 175 11 49 chr12 103370415 103370598 -40911891 + AluJb SINE Alu 137 312 0 1290 153 38 79 chr12 103370690 103370861 -40911628 - MER33 DNA MER1_type -2262 323 147 2412 81 0 16 chr12 103370861 103371171 -40911318 + AluSp SINE Alu 1 305 -8 378 0 0 0 chr12 103371171 103371213 -40911276 + (TA)n Simple_repeat Simple_repeat 2 43 0 1290 153 38 79 chr12 103371213 103371385 -40911104 - MER33 DNA MER1_type -2436 149 1 1890 95 0 15 chr12 103371578 103371840 -40910649 + AluSg SINE Alu 44 301 -9 562 265 18 16 chr12 103372114 103372406 -40910083 + MLT1I LTR MaLR 64 395 -14 3445 139 14 37 chr12 103372499 103372990 -40909499 - MER41D LTR ERV1 0 557 79 2603 43 0 0 chr12 103372990 103373291 -40909198 - AluY SINE Alu -10 301 1 3445 139 14 37 chr12 103373291 103373369 -40909120 - MER41D LTR ERV1 -478 79 1 27 49 0 0 chr12 103373497 103373538 -40908951 + AT_rich Low_complexity Low_complexity 1 41 0 1932 134 11 7 chr12 103373540 103373823 -40908666 + AluSx SINE Alu 5 288 -24 243 0 0 0 chr12 103373826 103373853 -40908636 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1893 168 10 0 chr12 103374406 103374710 -40907779 - AluJo SINE Alu -5 307 1 1960 144 0 0 chr12 103375060 103375338 -40907151 + AluSg SINE Alu 1 278 -32 283 240 107 33 chr12 103375363 103375513 -40906976 - L1ME4a LINE L1 -2 6119 5959 1044 84 23 0 chr12 103375524 103375655 -40906834 - AluSq/x SINE Alu -178 134 1 22 35 0 0 chr12 103375665 103375694 -40906795 + AT_rich Low_complexity Low_complexity 1 29 0 722 47 0 0 chr12 103375721 103375807 -40906682 + L1PA12 LINE L1 6083 6168 0 326 295 24 77 chr12 103376037 103376223 -40906266 - L1MC4a LINE L1 -345 5821 5744 2417 87 3 0 chr12 103376223 103376522 -40905967 - AluSp SINE Alu -11 302 3 326 295 24 77 chr12 103376522 103376614 -40905875 - L1MC4a LINE L1 -422 5744 5649 2221 113 3 0 chr12 103376663 103376963 -40905526 - AluSq SINE Alu -12 301 1 2220 109 3 3 chr12 103377086 103377389 -40905100 - AluSc SINE Alu -6 303 1 419 303 48 7 chr12 103377394 103377539 -40904950 - MLT1J LTR MaLR -71 440 290 729 211 0 0 chr12 103377742 103377856 -40904633 - FLAM_A SINE Alu -18 115 2 265 30 0 0 chr12 103377871 103377904 -40904585 + (TTG)n Simple_repeat Simple_repeat 1 180 0 2062 121 4 0 chr12 103377904 103378184 -40904305 - AluSx SINE Alu -1 313 1 1676 118 115 14 chr12 103378626 103378905 -40903584 + AluSg1 SINE Alu 1 307 -2 372 348 7 7 chr12 103379597 103379752 -40902737 + HERV16 LTR ERVL 1057 1211 -3785 247 159 0 0 chr12 103379757 103379801 -40902688 - MIR SINE MIR -123 139 96 225 194 60 90 chr12 103379811 103379849 -40902640 - AluJ/FLAM SINE Alu -230 72 34 1809 125 8 0 chr12 103379849 103380113 -40902376 - AluSq SINE Alu -17 296 31 4425 116 44 82 chr12 103380113 103380929 -40901560 + LTR1 LTR ERV1 1 785 0 225 194 60 90 chr12 103380929 103380956 -40901533 - AluJ/FLAM SINE Alu -266 36 8 207 0 0 0 chr12 103380984 103381007 -40901482 + (T)n Simple_repeat Simple_repeat 1 23 0 2396 80 0 3 chr12 103381024 103381323 -40901166 + AluSq SINE Alu 1 298 -15 221 254 15 30 chr12 103381594 103381661 -40900828 - L2 LINE L2 0 3313 3248 209 32 0 32 chr12 103381819 103381850 -40900639 + (TCCCC)n Simple_repeat Simple_repeat 4 33 0 1716 155 17 40 chr12 103381852 103382148 -40900341 - AluJo SINE Alu -22 290 2 1262 123 6 0 chr12 103382198 103382505 -40899984 - AluSg/x SINE Alu 0 440 133 2036 127 0 0 chr12 103383032 103383377 -40899112 - AluSx SINE Alu 0 345 1 1425 192 121 0 chr12 103384779 103385086 -40897403 + MER2 DNA MER2_type 1 344 0 598 241 42 72 chr12 103385162 103385398 -40897091 + MIR SINE MIR 2 230 -32 1377 111 0 0 chr12 103386650 103386839 -40895650 + AluSg/x SINE Alu 122 310 -2 1556 260 82 36 chr12 103386852 103387093 -40895396 - L2 LINE L2 0 3313 3084 846 200 25 6 chr12 103387093 103387253 -40895236 - FRAM SINE Alu -3 163 1 1556 260 82 36 chr12 103387253 103387847 -40894642 - L2 LINE L2 -229 3084 1925 2062 133 0 0 chr12 103387879 103388179 -40894310 - AluSx SINE Alu -12 300 1 642 299 263 12 chr12 103388219 103388812 -40893677 + L2 LINE L2 2555 3309 -4 2226 110 0 7 chr12 103388830 103389129 -40893360 + AluSx SINE Alu 1 297 -15 544 261 22 22 chr12 103389297 103389435 -40893054 - L2 LINE L2 -1 3271 3134 481 279 36 0 chr12 103389484 103389595 -40892894 - L2 LINE L2 -22 3250 3136 2044 92 32 11 chr12 103389645 103389949 -40892540 + AluSg SINE Alu 1 310 0 376 316 144 39 chr12 103390141 103390427 -40892062 - L2 LINE L2 -238 3034 2693 2334 92 7 0 chr12 103390427 103390720 -40891769 - AluSx SINE Alu -17 295 1 376 316 144 39 chr12 103390720 103390798 -40891691 - L2 LINE L2 -579 2693 2625 2214 93 0 0 chr12 103390841 103391139 -40891350 - AluSc SINE Alu 0 303 6 684 67 0 0 chr12 103391345 103391435 -40891054 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1688 151 3 46 chr12 103391435 103391740 -40890749 - AluSx SINE Alu -20 292 1 1364 196 45 84 chr12 103392447 103392847 -40889642 - MLT1B LTR MaLR 0 390 10 409 252 31 31 chr12 103393164 103393291 -40889198 - L2 LINE L2 0 3313 3187 201 270 68 0 chr12 103393332 103393406 -40889083 + MIR SINE MIR 113 191 -71 1352 199 40 17 chr12 103393417 103393613 -40888876 + L1M4 LINE L1 4650 4857 -1289 3410 182 7 5 chr12 103393613 103394169 -40888320 + MER41D LTR ERV1 1 557 0 1352 199 40 17 chr12 103394169 103394268 -40888221 + L1M4 LINE L1 4857 4952 -1194 6750 141 18 44 chr12 103394306 103394492 -40887997 + L1MC1 LINE L1 4850 5039 -1294 2327 100 0 0 chr12 103394492 103394793 -40887696 + AluSc SINE Alu 1 301 -8 6750 141 18 44 chr12 103394793 103395085 -40887404 + L1MC1 LINE L1 5039 5337 -996 1857 125 36 32 chr12 103395085 103395397 -40887092 - AluSx SINE Alu 0 313 1 6750 141 18 44 chr12 103395397 103395783 -40886706 + L1MC1 LINE L1 5337 5731 -602 2146 102 0 3 chr12 103395783 103396111 -40886378 + AluSx SINE Alu 1 327 0 6750 141 18 44 chr12 103396111 103396747 -40885742 + L1MC1 LINE L1 5731 6333 0 189 244 0 0 chr12 103396749 103396790 -40885699 + MIR SINE MIR 198 238 -24 21 0 0 0 chr12 103398324 103398345 -40884144 + AT_rich Low_complexity Low_complexity 1 21 0 896 139 0 29 chr12 103398395 103398532 -40883957 + FLAM_C SINE Alu 1 133 0 660 193 20 21 chr12 103399103 103399571 -40882918 + CT-rich Low_complexity Low_complexity 1 467 0 253 264 11 55 chr12 103399772 103399863 -40882626 + MIR SINE MIR 149 235 -27 192 258 217 17 chr12 103400381 103400501 -40881988 - MIR SINE MIR -2 260 117 325 304 209 16 chr12 103400612 103400803 -40881686 - MIR SINE MIR -12 250 23 2179 118 20 0 chr12 103401047 103401480 -40881009 - AluSg SINE Alu 0 439 1 1934 112 0 0 chr12 103401620 103401878 -40880611 - AluSx SINE Alu -12 300 43 282 287 32 21 chr12 103401999 103402093 -40880396 + L2 LINE L2 3174 3268 -4 2550 47 3 0 chr12 103402175 103402473 -40880016 + AluY SINE Alu 1 299 -12 2355 113 0 0 chr12 103402667 103403004 -40879485 - AluSq SINE Alu 0 337 1 435 38 0 0 chr12 103403636 103403689 -40878800 + (CA)n Simple_repeat Simple_repeat 2 54 0 745 199 20 14 chr12 103404244 103404390 -40878099 - FRAM SINE Alu -7 169 23 2344 94 0 0 chr12 103404405 103404703 -40877786 - AluSx SINE Alu -14 298 1 23 33 0 0 chr12 103404707 103404737 -40877752 + AT_rich Low_complexity Low_complexity 1 30 0 454 307 39 38 chr12 103404933 103405118 -40877371 - L1ME LINE L1 -400 5766 5585 838 245 199 9 chr12 103405130 103405456 -40877033 - L2 LINE L2 0 3313 2926 2243 122 0 0 chr12 103405651 103405946 -40876543 + AluSx SINE Alu 1 295 -17 1955 120 81 0 chr12 103406113 103406396 -40876093 + AluSg SINE Alu 1 306 -4 2037 125 30 7 chr12 103406806 103407110 -40875379 + AluSx SINE Alu 1 311 -1 2060 139 3 0 chr12 103407433 103407735 -40874754 - AluSx SINE Alu -9 303 1 1255 108 6 0 chr12 103407735 103407901 -40874588 - AluSx SINE Alu -145 167 1 492 18 0 0 chr12 103408419 103408476 -40874013 + (TA)n Simple_repeat Simple_repeat 2 58 0 2137 107 4 0 chr12 103408476 103408757 -40873732 - AluSg SINE Alu -28 282 1 32 26 0 0 chr12 103409267 103409306 -40873183 + AT_rich Low_complexity Low_complexity 1 39 0 693 163 14 78 chr12 103409471 103409576 -40872913 - MER94 DNA DNA 0 134 39 2070 140 0 13 chr12 103409576 103409890 -40872599 + AluSx SINE Alu 1 310 -2 693 163 14 78 chr12 103409890 103409925 -40872564 - MER94 DNA DNA -95 39 3 2095 110 7 7 chr12 103411125 103411426 -40871063 - AluSq SINE Alu -12 301 1 482 254 59 102 chr12 103411904 103412029 -40870460 - MIR SINE MIR -1 261 149 2532 63 0 0 chr12 103412029 103412331 -40870158 - AluY SINE Alu -9 302 1 482 254 59 102 chr12 103412331 103412441 -40870048 - MIR SINE MIR -113 149 36 21 0 0 0 chr12 103413160 103413181 -40869308 + AT_rich Low_complexity Low_complexity 1 21 0 237 250 0 36 chr12 103413338 103413394 -40869095 + MIR SINE MIR 16 69 -139 451 333 110 60 chr12 103413638 103414158 -40868331 + L3 LINE CR1 843 1388 -189 413 289 116 8 chr12 103414213 103414334 -40868155 - MIR3 SINE MIR -63 145 12 2096 141 3 0 chr12 103414519 103414823 -40867666 + AluSx SINE Alu 1 305 -7 2256 114 0 3 chr12 103415217 103415514 -40866975 - AluSx SINE Alu -16 296 1 1489 128 41 0 chr12 103415762 103416004 -40866485 - L1MA7 LINE L1 0 6291 6040 633 184 0 2 chr12 103416130 103416279 -40866210 - AluJb SINE Alu 0 312 132 1764 108 124 12 chr12 103416376 103416634 -40865855 + AluSg SINE Alu 1 287 -23 25 0 0 0 chr12 103416634 103416659 -40865830 + AT_rich Low_complexity Low_complexity 1 25 0 211 379 0 0 chr12 103416668 103416726 -40865763 - MER91A DNA MER1_type 0 196 139 533 346 19 0 chr12 103416757 103416919 -40865570 - MER91A DNA MER1_type -20 176 12 417 39 0 0 chr12 103417618 103417669 -40864820 + (TG)n Simple_repeat Simple_repeat 1 51 0 734 268 76 23 chr12 103418727 103419029 -40863460 - MLT1I LTR MaLR -8 401 84 204 139 28 0 chr12 103419104 103419140 -40863349 + CT-rich Low_complexity Low_complexity 1 37 0 485 311 5 77 chr12 103419308 103419504 -40862985 - MIR3 SINE MIR -13 195 14 199 184 0 0 chr12 103420338 103420376 -40862113 - L2 LINE L2 -4 3309 3272 23 33 0 0 chr12 103420409 103420439 -40862050 + AT_rich Low_complexity Low_complexity 1 30 0 347 174 47 47 chr12 103420476 103420562 -40861927 + MIR SINE MIR 177 262 0 21 0 0 0 chr12 103420563 103420584 -40861905 + AT_rich Low_complexity Low_complexity 1 21 0 384 298 39 28 chr12 103420950 103421205 -40861284 - L1ME LINE L1 -316 5805 5548 26 50 0 0 chr12 103421246 103421286 -40861203 + AT_rich Low_complexity Low_complexity 1 40 0 2214 96 18 0 chr12 103421816 103422098 -40860391 - AluSg SINE Alu -23 287 1 1879 150 3 10 chr12 103423000 103423307 -40859182 - AluJo SINE Alu -3 309 5 1860 146 4 7 chr12 103423666 103423977 -40858512 - AluJb SINE Alu 0 315 6 749 251 54 98 chr12 103423991 103424490 -40857999 - L1ME LINE L1 -1832 4314 3838 1595 273 46 19 chr12 103424512 103425476 -40857013 - L1ME LINE L1 -2451 3695 2545 1265 254 116 22 chr12 103425469 103426265 -40856224 - L1ME LINE L1 -492 5661 4807 * 3477 143 32 27 chr12 103426260 103426322 -40856167 - L1MD2 LINE L1 -475 5884 5824 1851 156 3 20 chr12 103426322 103426617 -40855872 + AluSx SINE Alu 1 290 -22 3477 143 32 27 chr12 103426617 103427182 -40855307 - L1MD2 LINE L1 -535 5824 5254 336 296 50 44 chr12 103427311 103427470 -40855019 - HAL1 LINE L1 -897 1610 1451 230 298 68 12 chr12 103427665 103427826 -40854663 - L1ME LINE L1 -5021 1098 929 2267 115 0 3 chr12 103427827 103428140 -40854349 - AluSx SINE Alu 0 312 1 2029 142 0 0 chr12 103428744 103429033 -40853456 - AluJb SINE Alu -21 291 3 194 366 177 0 chr12 103429035 103429221 -40853268 + L2 LINE L2 1721 1939 -1375 700 236 0 0 chr12 103429239 103429379 -40853110 - FLAM_A SINE Alu -2 140 1 207 373 0 0 chr12 103429554 103429621 -40852868 + L2 LINE L2 2218 2284 -1030 341 232 232 9 chr12 103429765 103429877 -40852612 + L2 LINE L2 3175 3311 -2 488 277 197 0 chr12 103430409 103430622 -40851867 - L2 LINE L2 -338 2976 2722 405 0 0 0 chr12 103431123 103431168 -40851321 + (TG)n Simple_repeat Simple_repeat 2 46 0 207 0 0 0 chr12 103431167 103431190 -40851299 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 * 1894 144 32 0 chr12 103431168 103431464 -40851025 - AluSx SINE Alu -26 286 1 21 0 0 0 chr12 103431725 103431746 -40850743 + AT_rich Low_complexity Low_complexity 1 21 0 720 63 13 0 chr12 103432199 103432358 -40850131 - L1PA10 LINE L1 -3 6165 5864 2223 112 3 6 chr12 103432729 103433042 -40849447 - AluSx SINE Alu 0 312 1 426 20 0 0 chr12 103433080 103433131 -40849358 + (CAATT)n Simple_repeat Simple_repeat 4 54 0 2036 131 3 0 chr12 103433470 103433753 -40848736 - AluSx SINE Alu -25 287 4 1812 137 14 27 chr12 103433925 103434217 -40848272 + AluSx SINE Alu 5 292 -20 937 271 0 24 chr12 103434218 103434465 -40848024 + MIR SINE MIR 22 262 0 1007 130 0 0 chr12 103434854 103435000 -40847489 + AluSc SINE Alu 152 297 -12 2086 137 0 0 chr12 103435346 103435639 -40846850 - AluSx SINE Alu -19 293 1 237 65 0 0 chr12 103435753 103435784 -40846705 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2566 199 55 43 chr12 103435817 103436400 -40846089 - MER21B LTR ERV1 -2 861 272 344 102 0 0 chr12 103436410 103436459 -40846030 - MER39B LTR ERV1 -189 464 416 1188 153 5 39 chr12 103436476 103436679 -40845810 + MSTC LTR MaLR 1 196 -232 1244 86 6 6 chr12 103436779 103436953 -40845536 - L1PA7 LINE L1 -4 6150 5977 1310 132 43 30 chr12 103436954 103436973 -40845516 + MSTC LTR MaLR 191 208 -220 2307 101 3 7 chr12 103436973 103437281 -40845208 + AluSx SINE Alu 1 307 -5 1310 132 43 30 chr12 103437281 103437496 -40844993 + MSTC LTR MaLR 208 428 0 * 1409 139 36 28 chr12 103437496 103437715 -40844774 - MER39 LTR ERV1 -268 439 219 468 149 21 21 chr12 103437711 103437742 -40844747 - MER21A LTR ERV1 -766 165 135 * 297 0 0 0 chr12 103437742 103437775 -40844714 + (GA)n Simple_repeat Simple_repeat 2 34 0 468 149 21 21 chr12 103437775 103437837 -40844652 - MER21A LTR ERV1 -795 136 72 236 174 29 87 chr12 103437944 103438013 -40844476 - MER21A LTR ERV1 -862 69 5 * 840 146 116 18 chr12 103437995 103438159 -40844330 + Tigger2 DNA MER2_type 2529 2708 -10 261 342 34 8 chr12 103438461 103438578 -40843911 + L1MEd LINE L1 560 679 -5440 634 269 173 23 chr12 103438723 103438983 -40843506 + LTR16C LTR ERVL 188 486 -5 703 249 139 73 chr12 103439144 103439703 -40842786 + L1MC5 LINE L1 7316 7911 -50 337 307 220 0 chr12 103439810 103439960 -40842529 - MER5A DNA MER1_type -3 186 4 272 271 15 30 chr12 103440296 103440429 -40842060 + GA-rich Low_complexity Low_complexity 3 133 0 222 274 96 67 chr12 103440442 103440577 -40841912 - L2 LINE L2 -4 3309 3171 2281 107 3 0 chr12 103440600 103440898 -40841591 + AluSq SINE Alu 1 299 -14 2186 116 3 0 chr12 103441786 103442088 -40840401 + AluSg SINE Alu 1 303 -7 21 36 0 0 chr12 103442268 103442296 -40840193 + AT_rich Low_complexity Low_complexity 1 28 0 2193 128 0 3 chr12 103442484 103442796 -40839693 - AluSx SINE Alu -1 311 1 878 91 0 0 chr12 103442946 103443056 -40839433 - AluSc SINE Alu -196 113 4 379 310 48 7 chr12 103443064 103443209 -40839280 - MLT1J LTR MaLR -71 440 290 209 361 0 0 chr12 103445011 103445083 -40837406 - L2 LINE L2 -8 3264 3193 207 338 50 0 chr12 103445544 103445624 -40836865 - L3b LINE CR1 -202 1381 1298 436 262 24 42 chr12 103446585 103446753 -40835736 + CT-rich Low_complexity Low_complexity 1 165 0 21 36 0 0 chr12 103446870 103446898 -40835591 + AT_rich Low_complexity Low_complexity 1 28 0 233 397 30 15 chr12 103447623 103447710 -40834779 + MER5A DNA MER1_type 57 148 -41 2274 104 0 0 chr12 103447710 103448007 -40834482 - AluY SINE Alu -14 297 1 233 397 30 15 chr12 103448007 103448050 -40834439 + MER5A DNA MER1_type 148 189 0 199 396 60 7 chr12 103448056 103448205 -40834284 + L3 LINE CR1 1284 1440 -137 717 253 0 13 chr12 103448240 103448398 -40834091 - MER91B DNA MER1_type -28 162 7 533 332 65 5 chr12 103448423 103448637 -40833852 + MIR SINE MIR 15 241 -21 276 188 0 0 chr12 103449031 103449095 -40833394 + (ATG)n Simple_repeat Simple_repeat 2 65 0 2223 131 0 0 chr12 103449148 103449453 -40833036 + AluSx SINE Alu 1 305 -7 1183 277 43 75 chr12 103449468 103449841 -40832648 + L1ME LINE L1 3 353 -5766 1553 176 52 10 chr12 103449841 103450130 -40832359 + AluJb SINE Alu 3 303 -9 1183 277 43 75 chr12 103450130 103450320 -40832169 + L1ME LINE L1 353 548 -5571 375 60 0 0 chr12 103450336 103450386 -40832103 + (TG)n Simple_repeat Simple_repeat 2 51 0 517 238 63 103 chr12 103450408 103450807 -40831682 + L1ME LINE L1 3790 4172 -1957 2322 107 3 0 chr12 103450818 103451128 -40831361 + AluSp SINE Alu 1 311 -2 243 268 83 70 chr12 103451144 103451197 -40831292 + L1ME LINE L1 5653 5704 -449 1870 144 7 3 chr12 103451197 103451496 -40830993 - AluJb SINE Alu -12 300 1 243 268 83 70 chr12 103451496 103451599 -40830890 + L1ME LINE L1 5704 5811 -342 249 276 51 20 chr12 103451674 103451772 -40830717 + MLT2E LTR ERVL 32 132 -496 256 263 13 13 chr12 103452012 103452088 -40830401 + LTR33A LTR ERVL 444 519 -4 381 92 42 33 chr12 103452327 103452447 -40830042 + (TA)n Simple_repeat Simple_repeat 1 121 0 21 57 0 0 chr12 103452998 103453033 -40829456 + AT_rich Low_complexity Low_complexity 1 35 0 296 326 143 54 chr12 103453914 103454138 -40828351 - L2 LINE L2 -1 3271 3028 781 271 86 44 chr12 103454257 103454865 -40827624 + L1ME3A LINE L1 4118 4750 -1396 454 281 18 35 chr12 103454888 103455173 -40827316 + L1ME3A LINE L1 4920 5199 -947 21 0 0 0 chr12 103455175 103455196 -40827293 + AT_rich Low_complexity Low_complexity 1 21 0 1445 178 26 40 chr12 103455312 103455444 -40827045 - MLT1D LTR MaLR 0 505 373 3383 108 2 0 chr12 103455444 103455925 -40826564 + L1PA13 LINE L1 5682 6163 0 1445 178 26 40 chr12 103455925 103456096 -40826393 - MLT1D LTR MaLR -132 373 206 902 259 41 40 chr12 103456209 103456541 -40825948 + L1ME3A LINE L1 5570 5915 -255 23 0 0 0 chr12 103456636 103456659 -40825830 + AT_rich Low_complexity Low_complexity 1 23 0 300 268 67 78 chr12 103456875 103457054 -40825435 + L1ME3A LINE L1 5968 6144 -26 1222 90 43 5 chr12 103457118 103457306 -40825183 + L1 LINE L1 4110 4304 -1842 2561 154 34 4 chr12 103457311 103457786 -40824703 + L1 LINE L1 4709 5197 -949 2186 113 0 0 chr12 103457786 103458077 -40824412 + AluSx SINE Alu 1 291 -21 1428 70 0 0 chr12 103458077 103458264 -40824225 + L1MA2 LINE L1 6118 6304 0 380 246 60 8 chr12 103458301 103458435 -40824054 - L1MC4 LINE L1 0 8042 7902 180 222 20 10 chr12 103458437 103458536 -40823953 + (TA)n Simple_repeat Simple_repeat 2 101 0 414 250 13 41 chr12 103458556 103458706 -40823783 - L1MC4 LINE L1 -166 7876 7621 543 164 16 8 chr12 103458718 103458840 -40823649 - L1M4 LINE L1 -1002 5144 5022 2158 143 20 15 chr12 103458842 103459233 -40823256 - L1MA4 LINE L1 -5 6295 5903 444 264 143 48 chr12 103459245 103459476 -40823013 - L1MC4 LINE L1 -314 7728 7476 * 2458 270 65 24 chr12 103459467 103459981 -40822508 - L1MC4a LINE L1 -435 7373 6882 2132 127 51 23 chr12 103459981 103460335 -40822154 + THE1B LTR MaLR 1 364 0 2458 270 65 24 chr12 103460335 103460557 -40821932 - L1MC4a LINE L1 -926 6882 6671 387 0 0 0 chr12 103460557 103460600 -40821889 + (CA)n Simple_repeat Simple_repeat 2 44 0 2458 270 65 24 chr12 103460600 103460623 -40821866 - L1MC4a LINE L1 -1137 6671 6650 2219 111 0 35 chr12 103460623 103460938 -40821551 - AluSx SINE Alu -8 304 1 2458 270 65 24 chr12 103460938 103461219 -40821270 - L1MC4a LINE L1 -1158 6650 6288 2106 121 7 13 chr12 103461278 103461583 -40820906 - AluSx SINE Alu -9 303 1 864 181 20 0 chr12 103464094 103464243 -40818246 - FRAM SINE Alu -20 156 5 22 0 0 0 chr12 103464245 103464267 -40818222 + AT_rich Low_complexity Low_complexity 1 22 0 277 337 136 44 chr12 103464343 103464675 -40817814 - L2 LINE L2 -1540 1774 1474 2351 130 11 13 chr12 103464675 103465051 -40817438 + THE1C LTR MaLR 1 375 0 277 337 136 44 chr12 103465051 103465573 -40816916 - L2 LINE L2 -1840 1474 842 298 284 34 111 chr12 103465830 103466154 -40816335 - L2 LINE L2 -162 3110 2812 23 92 0 0 chr12 103467080 103467145 -40815344 + AT_rich Low_complexity Low_complexity 1 65 0 1663 176 20 3 chr12 103468824 103469126 -40813363 - AluJb SINE Alu -5 307 1 210 71 0 0 chr12 103469155 103469183 -40813306 + (T)n Simple_repeat Simple_repeat 1 28 0 651 244 217 9 chr12 103469381 103469598 -40812891 + MIR SINE MIR 1 262 0 469 317 55 18 chr12 103471541 103471705 -40810784 - MER5B DNA MER1_type -2 176 7 23 0 0 0 chr12 103473358 103473381 -40809108 + AT_rich Low_complexity Low_complexity 1 23 0 228 265 77 75 chr12 103473424 103473959 -40808530 - L1M4 LINE L1 -2202 3944 3409 * 1404 167 17 29 chr12 103473944 103474289 -40808200 - L1M4 LINE L1 -743 5403 5101 293 256 61 0 chr12 103474415 103474497 -40807992 - MIR SINE MIR -3 259 173 1011 213 5 0 chr12 103474498 103474700 -40807789 - L1M4 LINE L1 -1060 5086 4884 316 339 173 12 chr12 103476381 103476549 -40805940 + MIR SINE MIR 7 201 -61 2109 128 0 3 chr12 103476631 103476927 -40805562 + AluSx SINE Alu 1 295 -17 274 329 0 13 chr12 103476976 103477055 -40805434 - L2 LINE L2 -4 3268 3191 217 321 45 60 chr12 103478115 103478249 -40804240 - MER5B DNA MER1_type -1 177 46 191 226 151 0 chr12 103478266 103478319 -40804170 + MER5A DNA MER1_type 128 188 -1 35 24 0 0 chr12 103478724 103478766 -40803723 + AT_rich Low_complexity Low_complexity 1 42 0 34 0 0 0 chr12 103478907 103478941 -40803548 + AT_rich Low_complexity Low_complexity 1 34 0 527 264 107 6 chr12 103479055 103479233 -40803256 + MIR SINE MIR 62 257 -5 258 239 26 44 chr12 103480158 103480271 -40802218 - L1ME4a LINE L1 0 6121 6011 999 158 33 6 chr12 103480285 103480468 -40802021 + MER20 DNA MER1_type 31 218 -1 903 287 17 14 chr12 103480537 103480882 -40801607 - L1ME4a LINE L1 -157 5964 5619 368 301 202 22 chr12 103480883 103481066 -40801423 + MIR SINE MIR 34 249 -13 184 256 47 0 chr12 103482241 103482284 -40800205 + MIR3 SINE MIR 117 161 -47 250 297 180 0 chr12 103482367 103482478 -40800011 - MIR SINE MIR -12 250 120 217 343 0 18 chr12 103482527 103482627 -40799862 - MIR SINE MIR -90 118 24 2057 162 0 0 chr12 103483034 103483342 -40799147 + AluSx SINE Alu 1 308 -4 275 131 115 16 chr12 103483892 103483953 -40798536 - AluS SINE Alu -4 297 231 1513 129 0 0 chr12 103484002 103484219 -40798270 - AluSx SINE Alu -1 311 95 477 177 184 43 chr12 103484229 103484370 -40798119 + L2 LINE L2 2928 3088 -225 653 110 0 0 chr12 103484383 103484474 -40798015 - AluSx SINE Alu -221 91 1 809 273 70 20 chr12 103484481 103484825 -40797664 + LTR52 LTR ERVL 47 407 -14 2545 237 134 43 chr12 103484917 103484972 -40797517 - L2 LINE L2 -4 3309 3260 872 208 56 0 chr12 103484972 103485150 -40797339 - MER5A DNA MER1_type -1 188 1 2545 237 134 43 chr12 103485150 103486289 -40796200 - L2 LINE L2 -53 3260 1974 243 299 14 56 chr12 103486290 103486434 -40796055 + L2 LINE L2 2607 2744 -570 31 26 0 0 chr12 103486630 103486668 -40795821 + AT_rich Low_complexity Low_complexity 1 38 0 495 371 6 17 chr12 103486734 103486912 -40795577 + MIR SINE MIR 54 229 -33 231 36 0 0 chr12 103488590 103488618 -40793871 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2016 125 0 0 chr12 103488627 103488899 -40793590 - AluSx SINE Alu -40 272 1 838 322 72 66 chr12 103489480 103490315 -40792174 - L2 LINE L2 -767 2547 1708 2606 27 0 7 chr12 103490460 103490761 -40791728 + AluY SINE Alu 1 299 -12 316 315 46 9 chr12 103490879 103490987 -40791502 + L2 LINE L2 3160 3271 -1 231 360 90 0 chr12 103492241 103492341 -40790148 - L2 LINE L2 -19 3253 3145 32 75 0 0 chr12 103492805 103492872 -40789617 + AT_rich Low_complexity Low_complexity 1 67 0 1372 252 77 3 chr12 103493752 103494252 -40788237 - MLT1E1 LTR MaLR -5 649 1 640 306 79 1 chr12 103494728 103495134 -40787355 - ERVL LTR ERVL -2138 2858 2397 523 264 124 58 chr12 103495232 103496029 -40786460 + L1MC/D LINE L1 4797 5654 -748 26 0 0 0 chr12 103496029 103496055 -40786434 + AT_rich Low_complexity Low_complexity 1 26 0 301 362 40 0 chr12 103496119 103496268 -40786221 - ERVL LTR ERVL -945 4819 4665 34347 94 17 9 chr12 103497874 103503969 -40778520 - L1PA6 LINE L1 -7 6147 11 21 0 0 0 chr12 103504042 103504063 -40778426 + AT_rich Low_complexity Low_complexity 1 21 0 246 195 138 23 chr12 103504468 103504555 -40777934 - L2 LINE L2 0 3313 3217 211 294 22 22 chr12 103504563 103504655 -40777834 - L2 LINE L2 -828 2486 2395 295 200 17 0 chr12 103504723 103504783 -40777706 - Charlie8 DNA MER1_type -989 1428 1368 219 297 173 24 chr12 103504880 103505129 -40777360 - L2 LINE L2 -102 3211 2926 401 295 55 45 chr12 103506551 103506938 -40775551 + HAL1b LINE L1 440 709 -639 21 57 0 0 chr12 103506942 103506977 -40775512 + AT_rich Low_complexity Low_complexity 1 35 0 270 81 0 0 chr12 103507163 103507200 -40775289 + (CA)n Simple_repeat Simple_repeat 2 38 0 2238 115 0 0 chr12 103507308 103507613 -40774876 - AluSx SINE Alu -7 305 1 414 344 84 8 chr12 103507760 103508022 -40774467 + L1M4 LINE L1 2110 2391 -3755 395 332 31 0 chr12 103508174 103508430 -40774059 + L1M4 LINE L1 3870 4133 -2013 22 56 0 0 chr12 103508454 103508490 -40773999 + AT_rich Low_complexity Low_complexity 1 36 0 258 257 29 37 chr12 103508733 103508869 -40773620 + L1M4 LINE L1 4487 4621 -1525 334 300 4 65 chr12 103508950 103509180 -40773309 + L1M4 LINE L1 4786 5001 -1145 38933 63 9 2 chr12 103509263 103515368 -40767121 + L1PA5 LINE L1 1 6149 -5 354 363 102 40 chr12 103515669 103516237 -40766252 - L2 LINE L2 -563 2751 2149 2437 73 3 0 chr12 103516558 103516858 -40765631 + AluY SINE Alu 1 301 -10 465 313 99 28 chr12 103517158 103517580 -40764909 - L2 LINE L2 -1646 1668 1217 1466 183 4 0 chr12 103517782 103518023 -40764466 - AluJb SINE Alu -70 242 1 228 167 0 0 chr12 103518780 103518816 -40763673 + Alu SINE Alu 134 169 -134 2676 107 0 0 chr12 103519088 103519452 -40763037 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr12 103520423 103520447 -40762042 + AT_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr12 103520735 103520764 -40761725 + (T)n Simple_repeat Simple_repeat 1 29 0 24 0 0 0 chr12 103521380 103521404 -40761085 + AT_rich Low_complexity Low_complexity 1 24 0 2341 97 0 3 chr12 103521416 103521715 -40760774 - AluSc SINE Alu -7 302 5 1808 162 30 7 chr12 103521718 103522014 -40760475 - AluJo SINE Alu -9 303 1 487 211 18 99 chr12 103522104 103522275 -40760214 - L2 LINE L2 -2 3311 3155 1034 181 57 22 chr12 103522275 103522502 -40759987 + MER46A DNA MER2_type 2 236 0 195 200 0 160 chr12 103522502 103522627 -40759862 - MIR SINE MIR -105 157 53 271 156 55 8 chr12 103523085 103523213 -40759276 + (TA)n Simple_repeat Simple_repeat 2 135 0 415 186 60 6 chr12 103523480 103523714 -40758775 + (TA)n Simple_repeat Simple_repeat 1 246 0 338 90 84 19 chr12 103523865 103524020 -40758469 + (TA)n Simple_repeat Simple_repeat 1 165 0 185 19 130 0 chr12 103524046 103524100 -40758389 + (TA)n Simple_repeat Simple_repeat 2 62 0 262 230 43 43 chr12 103524259 103524420 -40758069 + Charlie5 DNA MER1_type 81 241 -2371 339 211 0 0 chr12 103524426 103524502 -40757987 + Charlie5 DNA MER1_type 2549 2624 0 186 286 89 0 chr12 103524582 103524638 -40757851 + MER5A DNA MER1_type 129 189 0 21 36 0 0 chr12 103526361 103526389 -40756100 + AT_rich Low_complexity Low_complexity 1 28 0 360 302 75 19 chr12 103527627 103527733 -40754756 - L2 LINE L2 -22 3250 3139 597 299 24 14 chr12 103528561 103528768 -40753721 + LTR16C LTR ERVL 275 483 -8 180 125 0 0 chr12 103528844 103528876 -40753613 + (T)n Simple_repeat Simple_repeat 1 32 0 3046 80 80 110 chr12 103530306 103530908 -40751581 - THE1-int LTR MaLR -996 584 1 332 302 21 0 chr12 103531069 103531165 -40751324 - L2 LINE L2 -1042 2272 2175 653 130 0 0 chr12 103531165 103531265 -40751224 + AluSg/x SINE Alu 207 306 -3 21 0 0 0 chr12 103531792 103531813 -40750676 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 103532682 103532705 -40749784 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr12 103532993 103533024 -40749465 + AT_rich Low_complexity Low_complexity 1 31 0 306 320 30 10 chr12 103533090 103533190 -40749299 + L3 LINE CR1 1473 1574 -3 219 69 0 0 chr12 103533447 103533476 -40749013 + (TC)n Simple_repeat Simple_repeat 1 29 0 1912 152 10 0 chr12 103533476 103533765 -40748724 - AluSx SINE Alu -20 292 1 207 0 0 0 chr12 103534050 103534073 -40748416 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 296 299 231 0 chr12 103535115 103535262 -40747227 - MIR SINE MIR -51 211 31 854 161 27 0 chr12 103535262 103535411 -40747078 - MER20 DNA MER1_type 0 219 67 743 227 8 88 chr12 103536226 103536464 -40746025 - MIR SINE MIR -21 241 23 2306 108 0 6 chr12 103537218 103537532 -40744957 + AluSx SINE Alu 1 312 0 25 31 0 0 chr12 103538206 103538238 -40744251 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 103538882 103538903 -40743586 + AT_rich Low_complexity Low_complexity 1 21 0 1794 163 0 7 chr12 103539044 103539332 -40743157 + MER7A DNA MER2_type 63 346 0 484 291 29 31 chr12 103540391 103540418 -40742071 - L1MC/D LINE L1 -374 5796 5770 2295 71 3 32 chr12 103540418 103540727 -40741762 - AluY SINE Alu -11 300 1 484 291 29 31 chr12 103540727 103540931 -40741558 - L1MC/D LINE L1 -400 5770 5583 749 271 22 41 chr12 103541777 103542046 -40740443 - L2 LINE L2 0 3313 3050 305 312 54 50 chr12 103542112 103542333 -40740156 - L1M4 LINE L1 -3654 2492 2271 337 307 8 31 chr12 103542586 103542713 -40739776 - L1ME3A LINE L1 -272 5898 5775 226 191 78 17 chr12 103542745 103542860 -40739629 + (TA)n Simple_repeat Simple_repeat 1 122 0 * 228 146 61 37 chr12 103542781 103542863 -40739626 + (TATAA)n Simple_repeat Simple_repeat 4 87 0 468 311 120 12 chr12 103542877 103543323 -40739166 - L1ME3A LINE L1 -391 5771 5276 287 246 36 45 chr12 103543336 103543446 -40739043 - L1ME3A LINE L1 -924 5222 5114 530 298 112 39 chr12 103543474 103544377 -40738112 - L1ME3A LINE L1 -1095 5051 4083 3084 179 33 25 chr12 103544394 103545171 -40737318 - L1MD2 LINE L1 -12 6347 5577 2465 93 0 0 chr12 103545171 103545481 -40737008 - AluSg SINE Alu 0 310 1 3084 179 33 25 chr12 103545481 103546233 -40736256 - L1MD2 LINE L1 -782 5577 4630 23 33 0 0 chr12 103546298 103546328 -40736161 + AT_rich Low_complexity Low_complexity 1 30 0 232 319 93 0 chr12 103546329 103546511 -40735978 - L1ME3A LINE L1 -2098 4048 3850 258 271 0 0 chr12 103546625 103546684 -40735805 - L1MD2 LINE L1 -75 6284 6226 1278 226 142 99 chr12 103546689 103547374 -40735115 - MER21B LTR ERV1 -149 714 1 493 263 32 58 chr12 103547387 103547787 -40734702 - L1ME3A LINE L1 -2647 3499 3110 1360 121 0 0 chr12 103547804 103547986 -40734503 + AluSg SINE Alu 4 185 -125 212 0 36 0 chr12 103547988 103548016 -40734473 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2339 174 32 21 chr12 103548016 103548539 -40733950 - L1MB8 LINE L1 -10 6168 5640 312 308 110 0 chr12 103548669 103548815 -40733674 + L1M4 LINE L1 2662 2823 -3323 1428 192 152 0 chr12 103548902 103549204 -40733285 + MER7A DNA MER2_type 1 346 0 369 0 0 0 chr12 103549312 103549333 -40733156 + (TG)n Simple_repeat Simple_repeat 1 62 0 369 0 0 0 chr12 103549333 103549374 -40733115 + (TG)n Simple_repeat Simple_repeat 2 42 0 1787 122 8 23 chr12 103549406 103549669 -40732820 - AluJo SINE Alu -53 259 1 332 246 31 46 chr12 103549669 103549799 -40732690 - L1ME3A LINE L1 -3167 2979 2852 413 295 39 14 chr12 103549820 103550027 -40732462 - L1MD2 LINE L1 -1896 4250 4039 1597 38 0 0 chr12 103550045 103550255 -40732234 - L1PA4 LINE L1 -2977 3169 2960 18153 34 0 0 chr12 103550255 103553223 -40729266 + L1PA4 LINE L1 3184 6155 0 1264 245 124 53 chr12 103553266 103553830 -40728659 - L1MC4 LINE L1 -1023 7019 6416 255 61 0 0 chr12 103554517 103554550 -40727939 + (TG)n Simple_repeat Simple_repeat 2 34 0 1901 114 83 20 chr12 103555670 103556021 -40726468 - THE1C LTR MaLR -2 373 1 202 352 68 11 chr12 103556274 103556362 -40726127 - L2 LINE L2 -2 3270 3178 8851 34 4 4 chr12 103556386 103558247 -40724242 + L1PA4 LINE L1 4296 6155 0 2479 78 0 0 chr12 103558323 103558632 -40723857 + AluY SINE Alu 1 309 -2 2326 88 7 3 chr12 103559714 103560021 -40722468 - AluSg SINE Alu -2 308 1 856 291 52 59 chr12 103561994 103562454 -40720035 + L2 LINE L2 2810 3266 -47 385 206 77 110 chr12 103562471 103562626 -40719863 + MIR SINE MIR 113 262 0 1038 268 61 10 chr12 103563466 103564122 -40718367 + L1MEc LINE L1 1888 2552 -3663 925 238 66 66 chr12 103564132 103564418 -40718071 + MER21B LTR ERV1 318 603 -260 2008 259 58 19 chr12 103564467 103565324 -40717165 + L1MEc LINE L1 2763 3653 -2562 2668 20 0 0 chr12 103565353 103565650 -40716839 + AluYa5 SINE Alu 1 297 -14 488 151 12 0 chr12 103565650 103565736 -40716753 - L1MA4A LINE L1 -35 6268 6182 678 190 26 61 chr12 103565760 103565973 -40716516 - L1MA4A LINE L1 -234 6069 5860 811 233 46 23 chr12 103566054 103566359 -40716130 + L1M4 LINE L1 4572 4883 -1263 312 159 43 14 chr12 103566381 103566450 -40716039 + L1MC5 LINE L1 6683 6753 -1208 567 189 31 63 chr12 103566464 103566623 -40715866 + L1MC5 LINE L1 7051 7204 -757 1414 214 88 50 chr12 103566641 103567240 -40715249 + L1MC5 LINE L1 7293 7914 -47 2296 88 3 14 chr12 103567518 103567814 -40714675 - AluSp SINE Alu -20 293 1 893 181 37 69 chr12 103568643 103568859 -40713630 - MER3 DNA MER1_type 0 209 1 653 130 0 0 chr12 103569750 103569850 -40712639 - AluSg/x SINE Alu -3 309 210 431 303 17 0 chr12 103569850 103569969 -40712520 + L2 LINE L2 2175 2295 -1019 227 147 0 0 chr12 103569969 103570003 -40712486 - MLT2F LTR ERVL 0 663 630 458 247 0 0 chr12 103570070 103570159 -40712330 - MER21B LTR ERV1 -52 811 723 694 97 0 0 chr12 103570159 103570252 -40712237 - AluSq SINE Alu -19 294 202 425 161 12 12 chr12 103570252 103570333 -40712156 - MER21A LTR ERV1 -131 800 720 1679 87 0 0 chr12 103570352 103570558 -40711931 - AluSq SINE Alu -98 215 10 1022 171 42 5 chr12 103570562 103570778 -40711711 - ORSL DNA AcHobo -39 236 13 402 341 77 0 chr12 103570860 103571042 -40711447 + MER91A DNA MER1_type 1 196 0 410 306 102 42 chr12 103571079 103571363 -40711126 - L2 LINE L2 -92 3221 2921 793 313 17 0 chr12 103571421 103571654 -40710835 + L2 LINE L2 2061 2297 -1017 4110 182 83 9 chr12 103571759 103572505 -40709984 - MER21B LTR ERV1 -62 801 1 186 43 0 0 chr12 103572510 103572533 -40709956 + (CTAG)n Simple_repeat Simple_repeat 2 24 0 313 228 0 63 chr12 103572543 103572622 -40709867 - MLT2C1 LTR ERVL -55 342 269 633 179 142 8 chr12 103572761 103572895 -40709594 - MLT1E3 LTR MaLR -428 196 45 1150 265 118 58 chr12 103572963 103573334 -40709155 + L2 LINE L2 2285 2632 -681 2092 141 0 0 chr12 103573334 103573638 -40708851 - AluSx SINE Alu -8 304 1 1150 265 118 58 chr12 103573638 103574228 -40708261 + L2 LINE L2 2632 3308 -5 187 343 14 14 chr12 103574225 103574298 -40708191 - L2 LINE L2 -474 2840 2768 * 5601 96 9 6 chr12 103575264 103575753 -40706736 - L1PA13 LINE L1 -2 6161 5675 321 26 0 0 chr12 103575753 103575791 -40706698 + (TG)n Simple_repeat Simple_repeat 2 39 0 5601 96 9 6 chr12 103575791 103575823 -40706666 - L1PA13 LINE L1 -488 5675 5645 933 72 0 0 chr12 103575823 103575962 -40706527 + (TA)n Simple_repeat Simple_repeat 2 140 0 5601 96 9 6 chr12 103575962 103577204 -40705285 - L1PA13 LINE L1 -518 5645 4397 2555 107 6 3 chr12 103577526 103577889 -40704600 - THE1B LTR MaLR 0 364 1 10103 95 55 37 chr12 103577889 103579440 -40703049 - THE1B-int LTR MaLR 0 1580 1 2471 113 31 3 chr12 103579440 103579794 -40702695 - THE1B LTR MaLR 0 364 1 497 309 42 24 chr12 103580040 103580205 -40702284 - L2 LINE L2 -6 3266 3099 189 330 93 33 chr12 103580265 103580447 -40702042 - L2 LINE L2 -407 2907 2715 245 65 0 0 chr12 103580463 103580494 -40701995 - U2 snRNA snRNA -155 33 3 710 299 94 42 chr12 103580518 103581069 -40701420 - L2 LINE L2 -623 2691 2112 315 229 84 61 chr12 103581074 103581205 -40701284 - MLT1I LTR MaLR 0 409 276 214 296 148 0 chr12 103581458 103581539 -40700950 - MIR SINE MIR -37 225 133 * 684 244 71 10 chr12 103581538 103581735 -40700754 - MLT1I LTR MaLR -198 211 3 823 264 57 108 chr12 103581938 103582105 -40700384 + L2 LINE L2 2881 3055 -258 201 39 0 0 chr12 103582105 103582131 -40700358 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2009 102 11 0 chr12 103582138 103582403 -40700086 - AluSq SINE Alu -45 268 1 823 264 57 108 chr12 103582403 103582681 -40699808 + L2 LINE L2 3061 3311 -2 2248 103 0 3 chr12 103582771 103583061 -40699428 + AluSq SINE Alu 1 289 -24 333 118 0 0 chr12 103583061 103583112 -40699377 + (GA)n Simple_repeat Simple_repeat 1 51 0 359 277 131 72 chr12 103583112 103583694 -40698795 - L2 LINE L2 -1481 1833 1218 227 259 326 34 chr12 103584290 103584437 -40698052 - MIR SINE MIR -66 196 7 195 204 0 0 chr12 103585462 103585506 -40696983 + CT-rich Low_complexity Low_complexity 2 45 0 437 222 30 20 chr12 103585872 103585971 -40696518 + L2 LINE L2 3191 3290 -23 7356 40 1 0 chr12 103585976 103587226 -40695263 + L1PA4 LINE L1 4899 6149 -6 208 289 0 0 chr12 103587258 103587303 -40695186 - L2 LINE L2 -18 3254 3210 1275 164 27 134 chr12 103587530 103587687 -40694802 + MLT1A1 LTR MaLR 1 173 -192 1836 133 70 0 chr12 103587687 103587957 -40694532 - AluSx SINE Alu -23 289 1 1275 164 27 134 chr12 103587957 103588129 -40694360 + MLT1A1 LTR MaLR 173 280 -85 1927 152 0 29 chr12 103588129 103588439 -40694050 - AluJo SINE Alu -8 304 4 1275 164 27 134 chr12 103588439 103588517 -40693972 + MLT1A1 LTR MaLR 280 365 0 191 291 53 66 chr12 103589197 103589348 -40693141 + MIR SINE MIR 48 196 -66 1951 128 35 3 chr12 103589400 103589682 -40692807 - AluSx SINE Alu -21 291 1 21 0 0 0 chr12 103591539 103591560 -40690929 + AT_rich Low_complexity Low_complexity 1 21 0 21 95 0 0 chr12 103591601 103591664 -40690825 + AT_rich Low_complexity Low_complexity 1 63 0 2154 117 13 0 chr12 103591932 103592240 -40690249 + AluSx SINE Alu 1 312 0 1843 86 15 123 chr12 103592705 103593029 -40689460 - AluSg1 SINE Alu -20 289 1 23 33 0 0 chr12 103593231 103593261 -40689228 + AT_rich Low_complexity Low_complexity 1 30 0 1772 170 10 35 chr12 103593492 103593803 -40688686 - AluJb SINE Alu -9 303 1 1838 248 124 28 chr12 103594140 103594849 -40687640 - MER20B DNA MER1_type -6 777 1 2205 133 0 0 chr12 103594920 103595222 -40687267 - AluSx SINE Alu -10 302 1 202 276 60 82 chr12 103596566 103596668 -40685821 + L2 LINE L2 3183 3283 -30 2189 102 6 16 chr12 103596668 103596982 -40685507 - AluSx SINE Alu -1 311 1 202 276 60 82 chr12 103596982 103597013 -40685476 + L2 LINE L2 3283 3313 0 251 299 102 39 chr12 103597029 103597156 -40685333 + MIR SINE MIR 16 150 -58 1901 155 36 31 chr12 103597174 103597504 -40684985 - MLT1B LTR MaLR 0 390 56 2490 142 43 19 chr12 103597504 103597920 -40684569 - MSTB LTR MaLR 0 426 1 1901 155 36 31 chr12 103597920 103597977 -40684512 - MLT1B LTR MaLR -334 56 1 2067 170 78 66 chr12 103597982 103598481 -40684008 - MLT1D LTR MaLR 0 505 1 201 74 0 0 chr12 103598850 103598877 -40683612 + (CA)n Simple_repeat Simple_repeat 2 28 0 240 377 11 0 chr12 103599434 103599617 -40682872 + L1ME LINE L1 5527 5711 -410 334 206 16 71 chr12 103599794 103599920 -40682569 + L1ME4a LINE L1 5947 6065 -56 2250 110 3 3 chr12 103600290 103600591 -40681898 - AluSx SINE Alu -11 301 1 180 115 0 0 chr12 103600645 103600671 -40681818 - MIR SINE MIR -67 141 116 445 311 110 22 chr12 103601738 103601768 -40680721 + MIR SINE MIR 1 27 -235 225 65 0 0 chr12 103601768 103601799 -40680690 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 445 311 110 22 chr12 103601799 103601996 -40680493 + MIR SINE MIR 27 248 -14 370 287 6 33 chr12 103603056 103603237 -40679252 + CT-rich Low_complexity Low_complexity 1 176 0 329 224 184 10 chr12 103604267 103604365 -40678124 + L2 LINE L2 3188 3302 -11 252 86 0 0 chr12 103605617 103605652 -40676837 + (CA)n Simple_repeat Simple_repeat 2 36 0 724 188 45 107 chr12 103605821 103605872 -40676617 + MER63A DNA MER1_type 1 54 -1634 2244 107 3 0 chr12 103605872 103606181 -40676308 + AluSg SINE Alu 1 310 0 724 188 45 107 chr12 103606181 103606353 -40676136 + MER63A DNA MER1_type 54 210 0 28 71 0 0 chr12 103607721 103607777 -40674712 + AT_rich Low_complexity Low_complexity 1 56 0 525 318 67 4 chr12 103608854 103609093 -40673396 + L2 LINE L2 2638 2891 -423 192 156 67 22 chr12 103609308 103609353 -40673136 + L2 LINE L2 3263 3309 -4 29 47 0 0 chr12 103609438 103609481 -40673008 + AT_rich Low_complexity Low_complexity 1 43 0 2235 110 14 14 chr12 103609510 103609864 -40672625 + L1PA15 LINE L1 5696 6049 -116 3301 136 38 49 chr12 103609864 103610519 -40671970 - MER51A LTR ERV1 0 640 2 824 92 8 0 chr12 103610519 103610639 -40671850 + L1PA15 LINE L1 6045 6165 0 241 294 0 12 chr12 103612249 103612334 -40670155 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 2109 284 117 15 chr12 103612482 103612901 -40669588 - L2 LINE L2 -1 3312 2937 198 0 0 0 chr12 103612901 103612923 -40669566 + (GGA)n Simple_repeat Simple_repeat 2 23 0 2109 284 117 15 chr12 103612923 103613662 -40668827 - L2 LINE L2 -376 2937 2031 421 286 137 0 chr12 103614273 103614455 -40668034 - LTR16C LTR ERVL -12 479 273 535 289 116 28 chr12 103614849 103615236 -40667253 + L1ME4a LINE L1 5460 5880 -241 21 0 0 0 chr12 103615251 103615272 -40667217 + AT_rich Low_complexity Low_complexity 1 21 0 2445 68 0 0 chr12 103615276 103615572 -40666917 + AluY SINE Alu 1 296 -15 456 67 0 0 chr12 103615572 103615632 -40666857 + (TA)n Simple_repeat Simple_repeat 2 61 0 21 36 0 0 chr12 103615769 103615797 -40666692 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 103616373 103616398 -40666091 + AT_rich Low_complexity Low_complexity 1 25 0 2769 234 174 96 chr12 103617149 103617909 -40664580 - L2 LINE L2 0 3313 2613 330 115 0 0 chr12 103617909 103617961 -40664528 + (TG)n Simple_repeat Simple_repeat 1 52 0 2769 234 174 96 chr12 103617961 103618398 -40664091 - L2 LINE L2 -700 2613 2211 391 167 14 0 chr12 103618398 103618470 -40664019 + MER104 DNA Tc2 29 101 -79 2769 234 174 96 chr12 103618470 103619333 -40663156 - L2 LINE L2 -1102 2211 1007 303 273 18 18 chr12 103620062 103620172 -40662317 + (CATATA)n Simple_repeat Simple_repeat 2 111 0 1577 213 22 17 chr12 103620568 103620833 -40661656 - L1M4 LINE L1 -2097 4860 4590 1811 154 21 4 chr12 103620833 103621148 -40661341 - AluSx SINE Alu 0 320 1 1577 213 22 17 chr12 103621148 103621289 -40661200 - L1M4 LINE L1 -2367 4590 4451 1967 170 111 39 chr12 103621289 103621795 -40660694 - MER74A LTR ERVL 0 558 72 1636 114 0 5 chr12 103621795 103622014 -40660475 - AluSq SINE Alu -17 296 79 1967 170 111 39 chr12 103622014 103622048 -40660441 - MER74A LTR ERVL -486 72 42 1567 220 27 9 chr12 103622048 103622545 -40659944 - L1M4 LINE L1 -2502 4455 3922 770 288 51 37 chr12 103622574 103622937 -40659552 - L1M4 LINE L1 -6352 507 2 241 259 86 0 chr12 103623042 103623123 -40659366 - L1ME LINE L1 -466 5704 5617 2373 128 27 10 chr12 103623530 103623944 -40658545 - L1MA4 LINE L1 -12 6288 5868 3623 122 10 7 chr12 103623949 103624557 -40657932 + L1MA4 LINE L1 5276 5885 -415 4151 272 187 24 chr12 103624643 103626721 -40655768 - L2 LINE L2 -15 3298 883 26 30 0 0 chr12 103626909 103626942 -40655547 + AT_rich Low_complexity Low_complexity 1 33 0 297 207 69 11 chr12 103627666 103627753 -40654736 - MLT1I LTR MaLR 0 409 318 228 279 16 0 chr12 103627927 103627988 -40654501 - MLT1I LTR MaLR -307 102 41 2165 125 0 0 chr12 103629212 103629508 -40652981 + AluJb SINE Alu 5 300 -12 2355 105 3 0 chr12 103629888 103630192 -40652297 + AluSp SINE Alu 1 305 -8 351 333 31 42 chr12 103630285 103630477 -40652012 - MIR SINE MIR -71 191 2 2768 214 45 20 chr12 103630661 103631298 -40651191 - MER82 DNA MER2_type 0 653 1 2104 122 7 0 chr12 103631871 103632165 -40650324 + AluSx SINE Alu 1 296 -16 236 339 83 9 chr12 103632499 103632608 -40649881 - L2 LINE L2 0 3313 3197 289 218 70 155 chr12 103632790 103633074 -40649415 - L2 LINE L2 0 3313 3054 1513 203 32 24 chr12 103633074 103633453 -40649036 + LTR52 LTR ERVL 1 382 -39 3453 243 79 34 chr12 103633453 103634172 -40648317 - L2 LINE L2 -259 3054 2241 595 217 7 0 chr12 103634172 103634315 -40648174 + L1MA4 LINE L1 6151 6294 -6 3453 243 79 34 chr12 103634315 103634797 -40647692 - L2 LINE L2 -1072 2241 1782 42726 34 1 2 chr12 103634814 103640969 -40641520 - L1PA3 LINE L1 -5 6150 4 354 289 176 0 chr12 103640970 103641112 -40641377 - L2 LINE L2 -1520 1794 1628 286 317 100 19 chr12 103641264 103641573 -40640916 + L1MEd LINE L1 452 785 -5334 4603 201 73 56 chr12 103642086 103643231 -40639258 + Charlie1a DNA MER1_type 1 1125 -1636 275 49 24 0 chr12 103643231 103643272 -40639217 + (TG)n Simple_repeat Simple_repeat 2 43 0 1978 141 0 21 chr12 103643272 103643563 -40638926 - AluSx SINE Alu -27 285 1 4603 201 73 56 chr12 103643563 103643847 -40638642 + Charlie1a DNA MER1_type 1124 1455 0 22 0 0 0 chr12 103644674 103644696 -40637793 + AT_rich Low_complexity Low_complexity 1 22 0 481 244 9 9 chr12 103645485 103645600 -40636889 + L2 LINE L2 3191 3305 -8 369 283 93 78 chr12 103645616 103645821 -40636668 - MIR SINE MIR -49 213 6 584 262 61 76 chr12 103647172 103647580 -40634909 - MLT1K LTR MaLR 0 588 187 971 275 16 23 chr12 103648025 103648173 -40634316 + MIR SINE MIR 6 153 -109 1134 178 58 9 chr12 103648173 103648398 -40634091 - MER46A DNA MER2_type 0 236 1 971 275 16 23 chr12 103648398 103648507 -40633982 + MIR SINE MIR 153 261 -1 36 23 0 0 chr12 103648579 103648622 -40633867 + AT_rich Low_complexity Low_complexity 1 43 0 2174 100 0 0 chr12 103648623 103648904 -40633585 - AluSg SINE Alu -14 296 16 771 271 138 31 chr12 103649114 103649443 -40633046 - L2 LINE L2 -597 2717 2338 1776 198 36 55 chr12 103649443 103649740 -40632749 - MLT1C LTR MaLR -2 465 179 2344 96 0 3 chr12 103649740 103650041 -40632448 - AluSc SINE Alu -9 300 1 1776 198 36 55 chr12 103650041 103650217 -40632272 - MLT1C LTR MaLR -288 179 1 771 271 138 31 chr12 103650217 103650278 -40632211 - L2 LINE L2 -976 2338 2285 224 309 37 0 chr12 103650789 103650870 -40631619 - L2 LINE L2 -5 3308 3225 261 346 40 55 chr12 103651280 103651482 -40631007 + MIR3 SINE MIR 4 202 -6 1302 143 18 14 chr12 103651899 103652116 -40630373 + MER20 DNA MER1_type 2 219 0 2126 114 14 0 chr12 103652299 103652589 -40629900 - AluSx SINE Alu -13 299 6 779 240 55 28 chr12 103652956 103653210 -40629279 + MIR SINE MIR 2 262 0 399 251 216 28 chr12 103653210 103653465 -40629024 + L1ME4a LINE L1 5800 6102 -19 773 287 26 9 chr12 103653994 103654224 -40628265 + MIR SINE MIR 8 241 -21 197 240 40 0 chr12 103655395 103655445 -40627044 - L2 LINE L2 -1 3312 3261 21 36 0 0 chr12 103655800 103655828 -40626661 + AT_rich Low_complexity Low_complexity 1 28 0 6118 81 50 0 chr12 103655828 103656829 -40625660 - L1PA11 LINE L1 -1 6173 5131 292 314 130 23 chr12 103657439 103657738 -40624751 + L2 LINE L2 1763 2093 -1221 191 321 179 31 chr12 103657775 103657937 -40624552 + L2 LINE L2 2791 2976 -338 495 342 38 60 chr12 103658021 103658287 -40624202 + L2 LINE L2 2992 3251 -21 342 238 7 88 chr12 103658427 103658574 -40623915 + L1ME4a LINE L1 5984 6118 -3 220 277 0 0 chr12 103658629 103658676 -40623813 + L2 LINE L2 3210 3256 -16 501 364 67 0 chr12 103658760 103658999 -40623490 + MIR SINE MIR 1 255 -7 395 310 28 43 chr12 103659693 103660086 -40622403 - HAL1 LINE L1 -863 1644 1258 311 209 0 45 chr12 103660117 103660184 -40622305 + MIR SINE MIR 81 144 -118 1393 170 24 93 chr12 103660195 103660572 -40621917 - MLT1A1 LTR MaLR -5 360 10 370 226 176 0 chr12 103660572 103660674 -40621815 + MIR SINE MIR 143 262 0 261 0 0 0 chr12 103661417 103661446 -40621043 + (CAG)n Simple_repeat Simple_repeat 3 31 0 208 366 65 0 chr12 103661606 103661699 -40620790 + MIR3 SINE MIR 85 183 -25 409 315 39 0 chr12 103662341 103662471 -40620018 - L2 LINE L2 -1 3271 3137 190 48 0 95 chr12 103662559 103662601 -40619888 + (CATAT)n Simple_repeat Simple_repeat 3 40 0 243 283 17 0 chr12 103662884 103662944 -40619545 + MIR SINE MIR 89 149 -113 432 0 0 0 chr12 103663217 103663265 -40619224 + (GA)n Simple_repeat Simple_repeat 1 48 0 833 302 31 4 chr12 103663944 103664199 -40618290 + MIR SINE MIR 1 262 0 274 281 0 0 chr12 103664273 103664330 -40618159 - L3 LINE CR1 -264 1313 1257 207 0 0 0 chr12 103664415 103664438 -40618051 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 552 304 62 26 chr12 103665554 103665781 -40616708 - MIR SINE MIR -8 254 20 2219 122 0 0 chr12 103665880 103666175 -40616314 - AluSx SINE Alu -17 295 1 2726 107 139 48 chr12 103666342 103666787 -40615702 - L1MA7 LINE L1 -1 6290 5782 2465 87 0 0 chr12 103666787 103667097 -40615392 - AluSg SINE Alu 0 310 1 2726 107 139 48 chr12 103667097 103667212 -40615277 - L1MA7 LINE L1 -509 5782 5679 21 36 0 0 chr12 103668972 103669000 -40613489 + AT_rich Low_complexity Low_complexity 1 28 0 444 328 106 6 chr12 103669156 103669336 -40613153 - L2 LINE L2 0 3272 3075 2237 126 39 17 chr12 103669366 103669722 -40612767 - THE1B LTR MaLR 0 364 1 519 186 10 10 chr12 103669938 103670040 -40612449 - MER5A DNA MER1_type -84 105 4 22 35 0 0 chr12 103670108 103670137 -40612352 + AT_rich Low_complexity Low_complexity 1 29 0 530 234 124 0 chr12 103670824 103670961 -40611528 + MIR SINE MIR 44 197 -65 231 292 105 78 chr12 103671174 103671393 -40611096 - L2 LINE L2 -107 3165 2941 971 218 24 4 chr12 103671414 103671662 -40610827 - L1MB7 LINE L1 -22 6162 5910 1137 134 0 0 chr12 103671675 103671832 -40610657 - AluSg/x SINE Alu -23 289 133 4002 187 50 37 chr12 103671853 103673599 -40608890 - L1MB7 LINE L1 -282 5896 4111 25 0 0 0 chr12 103674359 103674384 -40608105 + AT_rich Low_complexity Low_complexity 1 25 0 1923 163 0 0 chr12 103674632 103674915 -40607574 + AluSx SINE Alu 5 287 -25 466 274 203 32 chr12 103674928 103675209 -40607280 - L1ME4a LINE L1 0 6121 5793 1964 162 7 0 chr12 103675472 103675774 -40606715 + AluJb SINE Alu 1 304 -8 432 297 110 37 chr12 103676624 103676897 -40605592 + L2 LINE L2 3021 3313 0 304 270 0 0 chr12 103677044 103677107 -40605382 - L2 LINE L2 -5 3308 3246 264 203 17 0 chr12 103678421 103678480 -40604009 + MER117 DNA MER1_type 109 168 -29 2217 137 0 0 chr12 103679170 103679477 -40603012 + AluSx SINE Alu 1 307 -5 1975 132 0 17 chr12 103679502 103679852 -40602637 + AluSx SINE Alu 1 312 0 1278 146 139 15 chr12 103680508 103680782 -40601707 - LTR18B LTR ERVL 0 614 307 792 189 10 46 chr12 103680770 103680966 -40601523 - LTR18B LTR ERVL -425 189 1 * 282 73 0 0 chr12 103681320 103681361 -40601128 + (TG)n Simple_repeat Simple_repeat 2 42 0 229 315 167 31 chr12 103681854 103682016 -40600473 - MIR SINE MIR -71 191 8 344 343 109 37 chr12 103682120 103682470 -40600019 + L1MEd LINE L1 46 420 -5699 2433 62 0 0 chr12 103682504 103682810 -40599679 + AluY SINE Alu 3 308 -3 1907 167 96 50 chr12 103683349 103683723 -40598766 - MLT1D LTR MaLR -2 503 101 2074 79 32 85 chr12 103683723 103684039 -40598450 - AluSq SINE Alu -12 301 3 1907 167 96 50 chr12 103684039 103684143 -40598346 - MLT1D LTR MaLR -404 101 3 1059 289 61 30 chr12 103684723 103685249 -40597240 - L1MC4a LINE L1 -1884 5924 5383 478 311 140 20 chr12 103685595 103685994 -40596495 - L1MC4a LINE L1 -1315 4831 4385 1388 188 29 49 chr12 103686107 103686279 -40596210 - MER58B DNA MER1_type -2081 339 176 2092 115 0 24 chr12 103686279 103686575 -40595914 + AluSg SINE Alu 1 289 -21 1388 188 29 49 chr12 103686575 103686748 -40595741 - MER58B DNA MER1_type -2244 176 1 348 283 97 16 chr12 103686787 103687158 -40595331 - L1MC4a LINE L1 -3632 2514 2114 6128 163 109 104 chr12 103687494 103688478 -40594011 - Charlie1 DNA MER1_type -108 2653 1654 2385 73 3 10 chr12 103688478 103688780 -40593709 - AluSp SINE Alu -13 300 1 6128 163 109 104 chr12 103688780 103689606 -40592883 - Charlie1 DNA MER1_type -1107 1654 834 894 195 124 55 chr12 103689913 103689957 -40592532 - L1ME3A LINE L1 -9 6161 6121 2249 110 3 0 chr12 103689957 103690257 -40592232 + AluSq SINE Alu 1 301 -12 894 195 124 55 chr12 103690257 103690703 -40591786 - L1ME3A LINE L1 -49 6121 5580 222 177 16 16 chr12 103690760 103690822 -40591667 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 743 301 59 18 chr12 103691076 103691621 -40590868 - L1ME3A LINE L1 -748 5398 4832 700 311 98 22 chr12 103691624 103692213 -40590276 + HAL1 LINE L1 1162 1795 -712 244 180 0 0 chr12 103692670 103692720 -40589769 + HAL1b LINE L1 748 797 -551 1147 278 157 13 chr12 103693099 103693927 -40588562 + L1ME3A LINE L1 3758 4704 -1442 751 296 45 54 chr12 103693925 103694259 -40588230 + L1ME3A LINE L1 5621 5951 -219 * 2353 95 3 0 chr12 103694736 103695040 -40587449 + AluSp SINE Alu 1 305 -8 266 188 169 28 chr12 103695049 103695158 -40587331 - MIR SINE MIR -78 130 19 445 307 98 35 chr12 103695279 103695596 -40586893 - L1ME LINE L1 -536 5684 5349 323 261 52 30 chr12 103695640 103695774 -40586715 - L1ME LINE L1 -904 5311 5175 470 211 0 28 chr12 103696194 103696303 -40586186 + Charlie4 DNA MER1_type 1822 1927 -34 664 307 108 46 chr12 103696802 103697239 -40585250 + LTR16C LTR ERVL 20 483 -8 1958 125 57 7 chr12 103697315 103697612 -40584877 - AluSx SINE Alu 0 312 1 258 336 84 17 chr12 103698754 103698873 -40583616 - L2 LINE L2 -8 3264 3138 846 109 0 29 chr12 103699038 103699175 -40583314 - AluSg/x SINE Alu -6 304 172 185 264 0 38 chr12 103699483 103699536 -40582953 + L2 LINE L2 3263 3313 0 23 33 0 0 chr12 103699782 103699812 -40582677 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr12 103701761 103701796 -40580693 + AT_rich Low_complexity Low_complexity 1 35 0 660 59 0 0 chr12 103702316 103702401 -40580088 - AluSg/x SINE Alu -12 300 216 2392 84 0 7 chr12 103702973 103703281 -40579208 - AluSg SINE Alu -4 306 1 596 259 181 9 chr12 103703825 103704157 -40578332 - L1ME LINE L1 -2060 4155 3767 6234 69 21 27 chr12 103704187 103705080 -40577409 - L1PB1 LINE L1 0 6151 5264 * 14576 113 109 6 chr12 103705078 103707427 -40575062 - L1PBa LINE L1 -4268 2595 5 399 311 0 26 chr12 103707443 103707633 -40574856 - L1ME LINE L1 -2459 3756 3572 1381 273 65 55 chr12 103708049 103709182 -40573307 - L1MEc LINE L1 -3085 3130 2019 266 351 59 9 chr12 103709369 103709591 -40572898 - HAL1 LINE L1 -769 1738 1506 698 254 5 32 chr12 103709701 103709886 -40572603 + MIR SINE MIR 12 191 -71 23 54 0 0 chr12 103709886 103709923 -40572566 + AT_rich Low_complexity Low_complexity 1 37 0 429 275 219 0 chr12 103711894 103712072 -40570417 - MIR SINE MIR -44 218 2 363 340 81 61 chr12 103713250 103713447 -40569042 + L1PB4 LINE L1 585 785 -6064 4140 230 24 35 chr12 103713565 103713782 -40568707 + L1PB4 LINE L1 1050 1268 -5581 5462 54 15 29 chr12 103713782 103714518 -40567971 - L1PA8 LINE L1 -11 6161 5436 4140 230 24 35 chr12 103714518 103715346 -40567143 + L1PB4 LINE L1 1268 2083 -4766 * 5053 182 56 10 chr12 103715343 103717286 -40565203 + L1PB4 LINE L1 4765 6797 -61 495 0 0 0 chr12 103717291 103717346 -40565143 + (TA)n Simple_repeat Simple_repeat 2 56 0 491 218 245 14 chr12 103718002 103718149 -40564340 + MER5A DNA MER1_type 9 189 0 486 316 30 12 chr12 103718270 103718438 -40564051 - MIR3 SINE MIR -21 187 17 303 316 0 0 chr12 103718472 103718548 -40563941 - L2 LINE L2 -15 3257 3182 330 244 101 25 chr12 103718984 103719103 -40563386 - MIR SINE MIR -42 220 93 338 219 89 85 chr12 103719103 103719350 -40563139 - HAL1 LINE L1 -349 2158 1911 385 210 118 25 chr12 103719440 103719559 -40562930 - HAL1 LINE L1 -719 1788 1659 2853 251 126 42 chr12 103720042 103721559 -40560930 - HAL1 LINE L1 -835 1672 29 550 189 30 98 chr12 103721563 103721727 -40560762 - LTR48B LTR ERV1 -2 642 490 1463 213 57 27 chr12 103721731 103722102 -40560387 - LTR48 LTR ERV1 -250 537 156 246 183 0 171 chr12 103722104 103722186 -40560303 - LTR48 LTR ERV1 -585 108 1 285 340 21 0 chr12 103722214 103722308 -40560181 + MIR3 SINE MIR 112 207 -1 647 267 58 0 chr12 103723112 103723303 -40559186 + MIR SINE MIR 1 202 -60 250 315 9 56 chr12 103723649 103723757 -40558732 + MIR SINE MIR 117 219 -43 222 192 27 14 chr12 103723987 103724060 -40558429 + CT-rich Low_complexity Low_complexity 4 77 0 204 286 0 0 chr12 103724081 103724123 -40558366 + polypyrimidine Low_complexity Low_complexity 1 42 0 390 277 12 61 chr12 103725434 103725652 -40556837 - MIR SINE MIR -58 204 1 7502 85 1 7 chr12 103725674 103727517 -40554972 - L1PA8 LINE L1 -7 6165 4331 2405 61 27 0 chr12 103728554 103728851 -40553638 - AluY SINE Alu -6 305 1 377 240 53 47 chr12 103730137 103730287 -40552202 - HAL1 LINE L1 -32 2475 2325 552 262 107 32 chr12 103730335 103730522 -40551967 - MLT1I LTR MaLR -107 302 102 576 234 113 5 chr12 103730599 103730821 -40551668 - HAL1 LINE L1 -188 2319 2074 354 294 216 16 chr12 103730902 103731096 -40551393 - HAL1 LINE L1 -539 1968 1736 226 254 143 71 chr12 103731128 103731254 -40551235 - L2 LINE L2 -2 3270 3136 183 248 99 58 chr12 103732120 103732241 -40550248 + MIR3 SINE MIR 6 131 -77 25 0 0 0 chr12 103732828 103732853 -40549636 + AT_rich Low_complexity Low_complexity 1 25 0 221 316 26 44 chr12 103733598 103733712 -40548777 - L2 LINE L2 -3 3310 3199 315 65 0 0 chr12 103734241 103734287 -40548202 + (TG)n Simple_repeat Simple_repeat 2 47 0 233 377 97 24 chr12 103734338 103734545 -40547944 + L2 LINE L2 3042 3263 -9 187 340 80 20 chr12 103734553 103734703 -40547786 - L2 LINE L2 -328 2985 2827 205 343 29 20 chr12 103734983 103735085 -40547404 - L2 LINE L2 -593 2721 2619 199 338 164 27 chr12 103735826 103736051 -40546438 + L2 LINE L2 2580 2835 -479 24 32 0 0 chr12 103736324 103736355 -40546134 + AT_rich Low_complexity Low_complexity 1 31 0 369 154 39 8 chr12 103736378 103736508 -40545981 + (TATAA)n Simple_repeat Simple_repeat 5 138 0 380 72 96 24 chr12 103736560 103736727 -40545762 + (TA)n Simple_repeat Simple_repeat 1 179 0 240 187 36 24 chr12 103736722 103736888 -40545601 + (TTATA)n Simple_repeat Simple_repeat 2 169 0 * 303 144 83 15 chr12 103736896 103737028 -40545461 + (TA)n Simple_repeat Simple_repeat 2 142 0 225 209 27 75 chr12 103738350 103738537 -40543952 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 * 451 211 25 19 chr12 103738402 103738563 -40543926 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 377 91 75 26 chr12 103738568 103738878 -40543611 + (TA)n Simple_repeat Simple_repeat 1 325 0 226 224 122 54 chr12 103740039 103740073 -40542416 - HAL1b LINE L1 -5 1343 1310 300 244 110 49 chr12 103740073 103740319 -40542170 - L1ME4a LINE L1 -60 6061 1187 4522 146 40 26 chr12 103740486 103741343 -40541146 - L1MB4 LINE L1 -1 6179 5311 284 212 40 50 chr12 103741351 103741450 -40541039 - L1ME LINE L1 -526 5595 5498 1929 151 10 0 chr12 103741467 103741765 -40540724 - AluSx SINE Alu -11 301 1 730 250 41 73 chr12 103741918 103742134 -40540355 - L2 LINE L2 0 3313 3109 1115 219 14 0 chr12 103742134 103742353 -40540136 + MER58A DNA MER1_type 3 224 0 730 250 41 73 chr12 103742353 103742452 -40540037 - L2 LINE L2 -204 3109 3008 1807 125 10 31 chr12 103742776 103743064 -40539425 + THE1B LTR MaLR 31 312 -52 33 73 0 0 chr12 103743064 103743132 -40539357 + AT_rich Low_complexity Low_complexity 1 68 0 740 291 34 0 chr12 103743157 103743363 -40539126 + MIR SINE MIR 46 258 -4 333 0 0 0 chr12 103744297 103744334 -40538155 + (TG)n Simple_repeat Simple_repeat 1 37 0 633 296 57 12 chr12 103744609 103744856 -40537633 - MIR SINE MIR -2 260 3 5094 153 206 139 chr12 103745059 103746703 -40535786 - MER52A LTR ERV1 0 1755 1 202 369 84 38 chr12 103746725 103747299 -40535190 - L2 LINE L2 -1654 1660 1061 1437 230 34 0 chr12 103747620 103747911 -40534578 - AluJo SINE Alu -1 301 1 241 385 58 26 chr12 103748283 103748439 -40534050 + L2 LINE L2 3112 3272 0 462 286 57 29 chr12 103748524 103748699 -40533790 - L2 LINE L2 -2 3270 3091 201 307 18 44 chr12 103749112 103749173 -40533316 - L2 LINE L2 -20 3252 3194 1844 173 53 8 chr12 103749173 103749532 -40532957 - THE1C LTR MaLR 0 375 1 201 307 18 44 chr12 103749532 103749584 -40532905 - L2 LINE L2 -78 3194 3142 302 251 114 22 chr12 103749652 103749789 -40532700 - MIR SINE MIR -73 135 11 964 231 43 23 chr12 103749876 103750132 -40532357 + MIR SINE MIR 2 262 0 1132 245 76 79 chr12 103750337 103750932 -40531557 - MLT1G1 LTR MaLR 0 595 3 24 32 0 0 chr12 103751330 103751361 -40531128 + AT_rich Low_complexity Low_complexity 1 31 0 203 122 0 24 chr12 103751390 103751431 -40531058 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr12 103752309 103752331 -40530158 + AT_rich Low_complexity Low_complexity 1 22 0 488 279 111 21 chr12 103752607 103752797 -40529692 + MIR SINE MIR 52 258 -4 1898 146 82 6 chr12 103753003 103753367 -40529122 - L1MD1 LINE L1 0 6242 5851 439 226 96 0 chr12 103754290 103754405 -40528084 - MLT1I LTR MaLR -6 403 278 335 276 8 55 chr12 103754494 103754621 -40527868 - MER94 DNA DNA 0 134 14 2234 161 72 33 chr12 103754901 103755387 -40527102 + MLT1D LTR MaLR 1 505 0 515 238 94 26 chr12 103755436 103755597 -40526892 - MIR SINE MIR -62 146 2 1446 205 64 42 chr12 103756148 103756552 -40525937 + LTR16A LTR ERVL 18 430 -20 1237 231 99 68 chr12 103757663 103758083 -40524406 - MER21B LTR ERV1 -107 808 363 479 253 29 40 chr12 103758100 103758274 -40524215 - MER21B LTR ERV1 -469 394 223 358 169 0 0 chr12 103758295 103758354 -40524135 - MER21B LTR ERV1 -792 71 13 1916 141 22 0 chr12 103758859 103759160 -40523329 - AluSx SINE Alu 0 307 1 29 28 0 0 chr12 103759160 103759196 -40523293 + AT_rich Low_complexity Low_complexity 1 36 0 2360 88 0 3 chr12 103759206 103759502 -40522987 + AluSc SINE Alu 1 295 -14 1461 90 188 35 chr12 103760886 103761141 -40521348 + AluSx SINE Alu 1 294 -18 385 275 17 8 chr12 103761295 103761415 -40521074 + MIR SINE MIR 2 122 -140 1637 122 102 64 chr12 103761423 103761784 -40520705 - THE1C LTR MaLR 0 375 1 24 53 0 0 chr12 103761872 103761910 -40520579 + AT_rich Low_complexity Low_complexity 1 38 0 280 248 187 43 chr12 103762221 103762499 -40519990 + L1ME3A LINE L1 4117 4434 -1712 525 271 102 21 chr12 103762626 103762910 -40519579 + L1ME LINE L1 4096 4402 -1744 * 916 244 98 85 chr12 103762907 103763065 -40519424 + L1ME LINE L1 4644 4798 -1348 201 74 0 0 chr12 103763065 103763092 -40519397 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 916 244 98 85 chr12 103763092 103763637 -40518852 + L1ME LINE L1 4798 5356 -790 1350 215 182 13 chr12 103763881 103764332 -40518157 + L1ME3A LINE L1 5637 6163 -7 180 0 0 0 chr12 103765124 103765144 -40517345 + (CAA)n Simple_repeat Simple_repeat 2 21 0 267 245 72 13 chr12 103765178 103765261 -40517228 + L1ME LINE L1 5506 5593 -528 238 288 0 0 chr12 103765393 103765466 -40517023 + L1ME LINE L1 5759 5831 -290 379 268 45 0 chr12 103765473 103765585 -40516904 - MIR SINE MIR 0 262 146 5980 77 27 3 chr12 103765588 103765701 -40516788 - L1PA14 LINE L1 -1 6160 6051 2422 125 22 5 chr12 103765701 103766070 -40516419 - THE1C LTR MaLR 0 375 1 10252 90 40 47 chr12 103766070 103767662 -40514827 - THE1C-int LTR MaLR 0 1580 1 2731 91 11 5 chr12 103767662 103768035 -40514454 - THE1C LTR MaLR 0 375 1 5980 77 27 3 chr12 103768035 103768356 -40514133 - L1PA14 LINE L1 -110 6051 5739 1835 154 73 22 chr12 103768356 103768713 -40513776 + THE1C LTR MaLR 1 375 0 5980 77 27 3 chr12 103768713 103769408 -40513081 - L1PA14 LINE L1 -422 5739 5026 3141 199 0 19 chr12 103769426 103770055 -40512434 + L1PA14 LINE L1 4384 5000 -1146 394 359 8 0 chr12 103770056 103770173 -40512316 - MIR SINE MIR -115 147 30 1878 138 29 4 chr12 103770179 103770494 -40511995 - AluSg SINE Alu 0 322 1 21 0 0 0 chr12 103770701 103770722 -40511767 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr12 103770924 103770949 -40511540 + (T)n Simple_repeat Simple_repeat 1 25 0 903 202 129 0 chr12 103772048 103772241 -40510248 + MER20 DNA MER1_type 1 218 -1 731 296 16 29 chr12 103772347 103772590 -40509899 + MIR SINE MIR 2 241 -21 203 200 22 0 chr12 103773270 103773315 -40509174 + L2 LINE L2 3263 3308 -5 405 0 0 0 chr12 103773943 103773988 -40508501 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 555 294 64 38 chr12 103774089 103774324 -40508165 - MIR SINE MIR -14 248 8 32 26 0 0 chr12 103775724 103775763 -40506726 + AT_rich Low_complexity Low_complexity 1 39 0 294 168 99 46 chr12 103775904 103776035 -40506454 + L1ME3A LINE L1 5663 5800 -366 318 264 42 96 chr12 103776058 103776225 -40506264 + L1ME3A LINE L1 5791 5948 -222 238 231 16 91 chr12 103777493 103777614 -40504875 - L1ME4a LINE L1 -31 6090 5979 3718 132 27 28 chr12 103778164 103778841 -40503648 + L1MA8 LINE L1 5615 6290 -1 397 286 50 31 chr12 103779074 103779338 -40503151 - L1ME LINE L1 -676 5445 5182 2363 83 10 0 chr12 103780443 103780745 -40501744 + AluSp SINE Alu 1 305 -8 2330 94 3 0 chr12 103780771 103781070 -40501419 + AluSc SINE Alu 1 300 -9 487 224 102 14 chr12 103781184 103781331 -40501158 + MIR SINE MIR 2 161 -101 216 262 0 0 chr12 103781323 103781365 -40501124 + L2 LINE L2 3251 3292 -21 * 645 290 26 109 chr12 103781503 103782072 -40500417 + L1ME LINE L1 142 663 -5542 906 258 103 83 chr12 103782202 103783102 -40499387 + L1ME LINE L1 678 1595 -4801 585 265 207 3 chr12 103783124 103783415 -40499074 + L1ME LINE L1 2223 2532 -3683 259 313 43 52 chr12 103783589 103783704 -40498785 + MER81 DNA DNA 1 114 0 491 247 61 79 chr12 103784105 103784384 -40498105 - MLT1K LTR MaLR 0 588 315 1226 208 85 19 chr12 103784389 103784706 -40497783 - MER58B DNA MER1_type 0 341 4 579 235 120 6 chr12 103784772 103784955 -40497534 + L2 LINE L2 2149 2352 -962 1175 182 125 29 chr12 103785092 103785407 -40497082 - LTR54B LTR ERV1 -1 497 131 2555 20 40 0 chr12 103785407 103785706 -40496783 - AluY SINE Alu 0 311 1 1175 182 125 29 chr12 103785706 103785807 -40496682 - LTR54B LTR ERV1 -367 131 41 234 378 71 42 chr12 103786366 103786604 -40495885 - L2 LINE L2 -1 3271 3027 261 352 17 95 chr12 103789924 103790103 -40492386 - L2 LINE L2 -77 3195 3031 544 315 30 0 chr12 103790270 103790502 -40491987 + LTR16B LTR ERVL 1 239 -225 307 245 28 91 chr12 103790530 103790624 -40491865 + LTR16B LTR ERVL 331 415 -49 1862 164 3 7 chr12 103790624 103790922 -40491567 - AluJo SINE Alu -15 297 1 307 245 28 91 chr12 103790922 103790970 -40491519 + LTR16B LTR ERVL 415 464 0 709 216 30 59 chr12 103790995 103791171 -40491318 - MER34B LTR ERV1 0 565 400 2138 151 119 0 chr12 103791171 103791575 -40490914 + LTR47A LTR ERVL 1 452 0 709 216 30 59 chr12 103791575 103791703 -40490786 - MER34B LTR ERV1 -165 400 270 239 223 9 35 chr12 103791826 103791935 -40490554 - MER34C LTR ERV1 -448 128 35 205 346 110 53 chr12 103792427 103792501 -40489988 - L2 LINE L2 -338 2976 2908 2175 166 3 3 chr12 103792501 103792862 -40489627 - MLT1A1 LTR MaLR -4 361 1 205 346 110 53 chr12 103792862 103793105 -40489384 - L2 LINE L2 -406 2908 2641 253 167 0 0 chr12 103793455 103793503 -40488986 - MLT2D LTR ERVL 0 414 367 7151 129 41 8 chr12 103793510 103794702 -40487787 - Tigger3b DNA MER2_type 0 1231 1 228 184 0 0 chr12 103794702 103794751 -40487738 + (TG)n Simple_repeat Simple_repeat 2 50 0 237 221 78 0 chr12 103794773 103794850 -40487639 - L1MC4 LINE L1 -1339 6703 6621 372 94 0 0 chr12 103794850 103794903 -40487586 + (CA)n Simple_repeat Simple_repeat 1 53 0 1756 201 21 0 chr12 103794922 103795260 -40487229 - MLT2D LTR ERVL -69 345 1 429 199 30 15 chr12 103795507 103795638 -40486851 + LTR37B LTR ERV1 336 468 0 360 269 20 96 chr12 103795803 103795907 -40486582 - L1MEd LINE L1 -4942 1177 1067 1994 139 0 3 chr12 103795907 103796201 -40486288 - AluSx SINE Alu -14 298 6 360 269 20 96 chr12 103796201 103796595 -40485894 - L1MEd LINE L1 -5052 1067 717 220 176 0 0 chr12 103796596 103796630 -40485859 + polypyrimidine Low_complexity Low_complexity 3 36 0 571 163 41 12 chr12 103796631 103796803 -40485686 + CT-rich Low_complexity Low_complexity 4 180 0 1737 202 63 48 chr12 103796822 103797317 -40485172 - MLT1D LTR MaLR 0 505 4 717 289 108 19 chr12 103797321 103797636 -40484853 - L1MEd LINE L1 -5766 353 11 1345 297 95 23 chr12 103797669 103798278 -40484211 - MER115 DNA AcHobo -35 658 6 192 352 0 0 chr12 103798345 103798399 -40484090 + L2 LINE L2 2596 2649 -665 339 290 4 0 chr12 103798408 103798491 -40483998 + MIR SINE MIR 33 117 -91 478 222 8 26 chr12 103798503 103798620 -40483869 + MLT1F LTR MaLR 425 539 -3 1901 104 104 0 chr12 103799080 103799360 -40483129 + AluSg SINE Alu 1 309 -1 21 0 0 0 chr12 103799364 103799385 -40483104 + AT_rich Low_complexity Low_complexity 1 21 0 2187 145 15 0 chr12 103799544 103799876 -40482613 - MER1B DNA MER1_type 0 337 1 828 129 24 0 chr12 103800027 103800151 -40482338 + FLAM_C SINE Alu 6 132 -11 455 233 31 8 chr12 103800292 103800421 -40482068 - L1ME3A LINE L1 -12 6158 6027 232 279 35 47 chr12 103801395 103801481 -40481008 + L2 LINE L2 3227 3311 -2 * 534 343 45 51 chr12 103801476 103801943 -40480546 - L2 LINE L2 -528 2786 2323 35 54 0 0 chr12 103802439 103802495 -40479994 + AT_rich Low_complexity Low_complexity 1 56 0 297 326 0 0 chr12 103802508 103802597 -40479892 + MARNA DNA Mariner 94 182 -404 288 306 83 25 chr12 103802789 103802946 -40479543 + L2 LINE L2 2636 2801 -513 2514 81 3 3 chr12 103803073 103803420 -40479069 + THE1A LTR MaLR 7 353 -2 11425 88 1 2 chr12 103803423 103804997 -40477492 + THE1A-int LTR MaLR 2 1573 -7 2742 85 3 0 chr12 103805003 103805357 -40477132 + THE1A LTR MaLR 1 355 0 503 357 37 12 chr12 103805685 103805926 -40476563 + MIR SINE MIR 5 251 -11 347 192 66 93 chr12 103806091 103806196 -40476293 + L1MC4a LINE L1 5292 5391 -2417 1858 96 89 25 chr12 103806196 103806476 -40476013 + AluY SINE Alu 1 298 -13 347 192 66 93 chr12 103806476 103806552 -40475937 + L1MC4a LINE L1 5391 5468 -2340 271 119 75 75 chr12 103806580 103806647 -40475842 + L1MC4a LINE L1 5540 5606 -515 1309 184 45 0 chr12 103806683 103807001 -40475488 + MER33 DNA MER1_type 1 317 -7 381 325 58 32 chr12 103807066 103807254 -40475235 + L1MC4a LINE L1 5732 5924 -1884 271 336 35 9 chr12 103808264 103808380 -40474109 + L2 LINE L2 2560 2678 -636 421 294 34 41 chr12 103808416 103808562 -40473927 - L2 LINE L2 0 3313 3169 284 339 128 39 chr12 103808668 103809279 -40473210 - L2 LINE L2 -340 2974 2242 1036 271 40 50 chr12 103809292 103809668 -40472821 - L2 LINE L2 0 3313 2942 1890 241 96 47 chr12 103810158 103810601 -40471888 - HAL1 LINE L1 -147 2360 1940 333 0 0 0 chr12 103810601 103810638 -40471851 + (TG)n Simple_repeat Simple_repeat 1 37 0 1890 241 96 47 chr12 103810638 103810818 -40471671 - HAL1 LINE L1 -567 1940 1770 674 200 0 15 chr12 103810818 103810953 -40471536 - FLAM_A SINE Alu 0 133 1 1890 241 96 47 chr12 103810953 103811165 -40471324 - HAL1 LINE L1 -737 1770 1483 2322 87 0 6 chr12 103811557 103811890 -40470599 - AluY SINE Alu 0 311 1 2170 130 3 0 chr12 103812338 103812638 -40469851 - AluSx SINE Alu -11 301 1 2857 10 0 0 chr12 103813706 103814017 -40468472 - AluYa5 SINE Alu 0 311 1 4773 219 76 51 chr12 103814119 103816273 -40466216 - L1M4 LINE L1 -1589 4557 2350 633 255 72 80 chr12 103816511 103816774 -40465715 + MIR SINE MIR 1 261 -1 215 57 19 94 chr12 103816786 103816839 -40465650 + (TTATA)n Simple_repeat Simple_repeat 4 52 0 307 282 8 157 chr12 103817540 103817795 -40464694 + L2 LINE L2 3038 3254 -18 22 0 0 0 chr12 103818227 103818249 -40464240 + GC_rich Low_complexity Low_complexity 1 22 0 716 280 84 46 chr12 103819631 103819684 -40462805 - L2 LINE L2 -116 3197 3147 2493 70 3 0 chr12 103819684 103819984 -40462505 + AluSp SINE Alu 1 301 -12 716 280 84 46 chr12 103819984 103820418 -40462071 - L2 LINE L2 -166 3147 2674 545 182 238 33 chr12 103821348 103821529 -40460960 - MER20 DNA MER1_type -1 218 1 26 30 0 0 chr12 103822888 103822921 -40459568 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr12 103823614 103823643 -40458846 + AT_rich Low_complexity Low_complexity 1 29 0 2423 84 0 0 chr12 103824164 103824461 -40458028 - AluSg SINE Alu -13 297 1 338 321 80 0 chr12 103826227 103826339 -40456150 - MIR3 SINE MIR -7 201 81 1027 317 135 14 chr12 103826595 103827020 -40455469 - L2 LINE L2 -95 3218 2846 291 28 0 0 chr12 103827020 103827056 -40455433 + (TTA)n Simple_repeat Simple_repeat 1 36 0 4444 8 0 0 chr12 103827057 103827554 -40454935 - L1PA2 LINE L1 -13 6142 5646 1027 317 135 14 chr12 103827554 103827872 -40454617 - L2 LINE L2 -466 2847 2374 276 361 0 17 chr12 103827908 103828027 -40454462 + MIR3 SINE MIR 77 193 -15 21 0 0 0 chr12 103828388 103828409 -40454080 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr12 103829160 103829219 -40453270 + AT_rich Low_complexity Low_complexity 1 59 0 334 246 0 0 chr12 103829467 103829532 -40452957 + L2 LINE L2 3202 3266 -6 626 286 132 0 chr12 103830023 103830243 -40452246 + MIR SINE MIR 2 250 -12 2161 136 3 0 chr12 103831962 103832270 -40450219 - AluSx SINE Alu -3 309 1 549 170 30 0 chr12 103832452 103832552 -40449937 - AluJo SINE Alu -13 299 197 906 118 0 29 chr12 103832568 103832704 -40449785 - AluJo SINE Alu -169 133 2 226 274 105 32 chr12 103832915 103833010 -40449479 - MIR3 SINE MIR 0 208 107 1786 235 163 19 chr12 103833420 103833625 -40448864 - L1ME2 LINE L1 0 6164 5990 1950 152 10 7 chr12 103833625 103833921 -40448568 + AluJb SINE Alu 1 297 -15 1786 235 163 19 chr12 103833921 103834572 -40447917 - L1ME2 LINE L1 -174 5990 5184 381 22 0 0 chr12 103834574 103834620 -40447869 + (TG)n Simple_repeat Simple_repeat 1 46 0 1616 264 68 33 chr12 103834647 103835767 -40446722 - L1ME2 LINE L1 -963 5183 3986 264 367 18 9 chr12 103835931 103836040 -40446449 - L2 LINE L2 -177 3095 2986 277 297 90 9 chr12 103836132 103836243 -40446246 - MIR SINE MIR -23 239 120 500 247 77 33 chr12 103836729 103836911 -40445578 + MIR SINE MIR 73 262 0 1827 123 61 0 chr12 103837500 103837777 -40444712 + AluJb SINE Alu 1 294 -18 189 0 0 0 chr12 103837778 103837799 -40444690 + (TG)n Simple_repeat Simple_repeat 2 22 0 434 281 122 24 chr12 103838966 103839212 -40443277 - L1ME4a LINE L1 -199 5922 5653 573 288 122 59 chr12 103839258 103839467 -40443022 - L1M4c LINE L1 -864 964 770 2332 74 0 13 chr12 103839467 103839779 -40442710 - AluY SINE Alu -3 308 1 573 288 122 59 chr12 103839779 103840188 -40442301 - L1M4c LINE L1 -1058 770 61 405 0 0 0 chr12 103840346 103840391 -40442098 + (CA)n Simple_repeat Simple_repeat 2 46 0 29 0 0 0 chr12 103840397 103840426 -40442063 + AT_rich Low_complexity Low_complexity 1 29 0 504 0 0 0 chr12 103840946 103841002 -40441487 + (CA)n Simple_repeat Simple_repeat 2 57 0 303 49 0 0 chr12 103841001 103841042 -40441447 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 2722 161 39 48 chr12 103841048 103841594 -40440895 - MER68 LTR ERV1 0 562 22 237 196 0 0 chr12 103841599 103841650 -40440839 + (CA)n Simple_repeat Simple_repeat 2 52 0 28 0 0 0 chr12 103842101 103842129 -40440360 + AT_rich Low_complexity Low_complexity 1 28 0 339 178 84 37 chr12 103842580 103842687 -40439802 + L1ME4a LINE L1 5938 6049 -72 25 31 0 0 chr12 103842690 103842722 -40439767 + AT_rich Low_complexity Low_complexity 1 32 0 313 287 148 0 chr12 103842728 103842829 -40439660 + MER58A DNA MER1_type 2 117 0 25 0 0 0 chr12 103843086 103843111 -40439378 + AT_rich Low_complexity Low_complexity 1 25 0 907 135 0 0 chr12 103843114 103843247 -40439242 + FLAM_C SINE Alu 1 133 0 301 156 26 0 chr12 103843253 103843330 -40439159 + (TA)n Simple_repeat Simple_repeat 1 79 0 304 324 51 7 chr12 103843618 103843762 -40438727 - MIR SINE MIR -66 142 40 22 0 0 0 chr12 103843789 103843811 -40438678 + AT_rich Low_complexity Low_complexity 1 22 0 407 336 15 0 chr12 103843914 103844051 -40438438 + L3 LINE CR1 1428 1566 -11 21 0 0 0 chr12 103844879 103844900 -40437589 + AT_rich Low_complexity Low_complexity 1 21 0 2099 126 0 43 chr12 103845278 103845320 -40437169 - AluSx SINE Alu 0 312 270 216 0 0 0 chr12 103845320 103845344 -40437145 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2099 126 0 43 chr12 103845344 103845627 -40436862 - AluSx SINE Alu -42 270 1 780 161 134 65 chr12 103846341 103846527 -40435962 - MER20 DNA MER1_type -20 199 1 198 0 0 0 chr12 103846612 103846634 -40435855 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 23 0 0 0 chr12 103847623 103847646 -40434843 + AT_rich Low_complexity Low_complexity 1 23 0 453 159 56 40 chr12 103849463 103849589 -40432900 - L1MC4 LINE L1 -1 8041 7914 210 91 0 0 chr12 103849593 103849626 -40432863 + (TC)n Simple_repeat Simple_repeat 1 33 0 441 290 130 6 chr12 103849677 103849846 -40432643 + MIR SINE MIR 57 246 -16 203 139 0 47 chr12 103849817 103849860 -40432629 + L2 LINE L2 3263 3303 -10 * 342 265 122 34 chr12 103851885 103852032 -40430457 + L1ME LINE L1 5530 5689 -432 487 262 41 28 chr12 103852927 103853072 -40429417 - MIR SINE MIR -62 200 54 1237 246 115 55 chr12 103853462 103853988 -40428501 - MLT1F1 LTR MaLR -8 559 3 277 312 101 30 chr12 103854067 103854266 -40428223 - MIR SINE MIR -43 219 7 24 53 0 0 chr12 103854922 103854960 -40427529 + AT_rich Low_complexity Low_complexity 1 38 0 200 289 0 0 chr12 103855271 103855323 -40427166 + CT-rich Low_complexity Low_complexity 4 55 0 23 68 0 0 chr12 103855383 103855427 -40427062 + AT_rich Low_complexity Low_complexity 1 44 0 26 50 0 0 chr12 103857319 103857359 -40425130 + AT_rich Low_complexity Low_complexity 1 40 0 838 284 78 46 chr12 103858985 103859422 -40423067 - L1MCc LINE L1 -5950 473 23 518 291 75 17 chr12 103860249 103860610 -40421879 + L1ME LINE L1 4543 4924 -1222 521 289 155 8 chr12 103860909 103861303 -40421186 + L1ME LINE L1 5321 5772 -390 667 241 79 66 chr12 103861877 103862105 -40420384 + MIR SINE MIR 32 262 0 24 0 0 0 chr12 103862299 103862323 -40420166 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr12 103862999 103863031 -40419458 + AT_rich Low_complexity Low_complexity 1 32 0 1927 250 127 18 chr12 103864554 103865420 -40417069 + L1ME1 LINE L1 1314 2437 -3985 612 184 29 0 chr12 103865498 103865634 -40416855 + L1ME1 LINE L1 3167 3306 -3076 794 186 31 25 chr12 103865634 103865795 -40416694 - FRAM SINE Alu -14 162 1 302 307 10 10 chr12 103865801 103865902 -40416587 + L1ME1 LINE L1 3301 3401 -2981 730 169 15 0 chr12 103865902 103866032 -40416457 - FLAM_C SINE Alu -5 138 7 317 265 103 0 chr12 103866040 103866157 -40416332 + L1ME1 LINE L1 3438 3566 -2816 4719 219 96 41 chr12 103866169 103867916 -40414573 + L1ME1 LINE L1 3756 5599 -783 908 165 63 0 chr12 103867918 103868076 -40414413 + FRAM SINE Alu 1 167 -9 2513 226 58 20 chr12 103868076 103868772 -40413717 + L1ME1 LINE L1 5592 6313 -89 434 200 88 8 chr12 103868708 103868833 -40413656 + L1MA10 LINE L1 6408 6542 -28 * 652 181 174 7 chr12 103871256 103871411 -40411078 - MER90 LTR ERV1 -14 600 420 1011 302 41 20 chr12 103871416 103871810 -40410679 + L1M4c LINE L1 413 814 -5489 3600 233 94 26 chr12 103871996 103873209 -40409280 + L1M4c LINE L1 800 2168 -4215 837 92 15 0 chr12 103873209 103873339 -40409150 + L1MB1 LINE L1 6036 6167 -1 3600 233 94 26 chr12 103873339 103873613 -40408876 + L1M4c LINE L1 2168 2422 -3961 859 167 0 7 chr12 103873617 103873755 -40408734 + FAM SINE Alu 31 167 -18 8852 230 113 15 chr12 103873774 103874092 -40408397 + L1M4c LINE L1 2414 2699 -3683 336 24 0 0 chr12 103874092 103874133 -40408356 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8852 230 113 15 chr12 103874133 103876508 -40405981 + L1M4c LINE L1 2699 5369 -1013 2119 105 10 10 chr12 103876533 103876837 -40405652 + AluSq SINE Alu 1 304 -9 878 238 81 49 chr12 103876838 103876946 -40405543 + L1MEc LINE L1 2186 2289 -3926 2198 108 0 6 chr12 103876946 103877260 -40405229 + AluSx SINE Alu 1 312 0 878 238 81 49 chr12 103877260 103877647 -40404842 + L1MEc LINE L1 2289 2660 -3555 445 224 242 57 chr12 103877649 103877930 -40404559 - L1M4 LINE L1 -2161 3985 3653 23 0 0 0 chr12 103878635 103878658 -40403831 + AT_rich Low_complexity Low_complexity 1 23 0 250 200 32 21 chr12 103878680 103878775 -40403714 + (TA)n Simple_repeat Simple_repeat 2 97 0 304 261 59 8 chr12 103879139 103879258 -40403231 - L1MEc LINE L1 -4734 1662 1538 777 249 31 102 chr12 103879496 103879849 -40402640 + MLT1H LTR MaLR 29 356 -193 214 414 25 13 chr12 103879913 103880070 -40402419 + L2 LINE L2 2552 2710 -604 191 331 111 33 chr12 103880107 103880288 -40402201 + L2 LINE L2 2811 3005 -267 317 340 112 27 chr12 103881723 103882017 -40400472 - L2 LINE L2 -416 2898 2580 1341 242 62 96 chr12 103883313 103883925 -40398564 - MLT1E LTR MaLR 0 593 3 306 293 106 106 chr12 103884084 103884517 -40397972 + L2 LINE L2 2840 3272 0 270 270 106 48 chr12 103884735 103885071 -40397418 - L2 LINE L2 -101 3212 2732 342 295 204 32 chr12 103885101 103885538 -40396951 - L2 LINE L2 -549 2765 2254 4806 174 25 14 chr12 103885558 103886889 -40395600 + L1MB5 LINE L1 4833 6174 0 336 360 47 9 chr12 103886896 103887110 -40395379 - L2 LINE L2 -1078 2236 2015 21 36 0 0 chr12 103887575 103887603 -40394886 + AT_rich Low_complexity Low_complexity 1 28 0 360 77 0 0 chr12 103887630 103887682 -40394807 + (TG)n Simple_repeat Simple_repeat 1 52 0 194 318 16 16 chr12 103888026 103888089 -40394400 - L2 LINE L2 -1 3312 3250 2290 93 0 10 chr12 103888316 103888617 -40393872 - AluSx SINE Alu -14 298 1 1430 215 0 26 chr12 103889110 103889275 -40393214 - AluJb SINE Alu -18 294 139 2817 10 0 0 chr12 103889275 103889584 -40392905 - AluYa5 SINE Alu -2 309 1 1430 215 0 26 chr12 103889584 103889720 -40392769 - AluJb SINE Alu -173 139 1 489 222 136 23 chr12 103889749 103889925 -40392564 - MER46C DNA MER2_type -129 209 14 727 81 0 0 chr12 103890320 103890419 -40392070 - HY3 scRNA scRNA -2 99 1 465 259 30 15 chr12 103890445 103890580 -40391909 - MLT1K LTR MaLR -319 269 133 786 302 81 0 chr12 103891074 103891309 -40391180 + MIR SINE MIR 9 262 0 2250 198 77 0 chr12 103892623 103893092 -40389397 + MLT1D LTR MaLR 1 505 0 457 280 134 5 chr12 103893624 103893810 -40388679 - MIR SINE MIR -25 237 28 1056 220 201 87 chr12 103894142 103894204 -40388285 + MLT1E LTR MaLR 1 55 -538 1277 192 74 49 chr12 103894204 103894569 -40387920 + MLT1A2 LTR MaLR 1 374 0 1056 220 201 87 chr12 103894569 103894699 -40387790 + MLT1E LTR MaLR 55 169 -424 1033 108 0 0 chr12 103894699 103894857 -40387632 + L1PA10 LINE L1 6011 6168 0 1056 220 201 87 chr12 103894857 103895249 -40387240 + MLT1E LTR MaLR 169 592 -1 242 268 49 24 chr12 103895831 103895913 -40386576 - L2 LINE L2 -2 3311 3228 296 320 16 31 chr12 103896067 103896195 -40386294 + L2 LINE L2 3188 3313 0 220 282 0 28 chr12 103896230 103896301 -40386188 - MIR SINE MIR -101 161 93 249 33 0 0 chr12 103897961 103897991 -40384498 + (T)n Simple_repeat Simple_repeat 1 30 0 29 0 0 0 chr12 103898076 103898105 -40384384 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chr12 103898145 103898182 -40384307 + AT_rich Low_complexity Low_complexity 1 37 0 251 295 107 16 chr12 103899923 103900045 -40382444 + L3 LINE CR1 1440 1572 -5 21 0 0 0 chr12 103901298 103901319 -40381170 + AT_rich Low_complexity Low_complexity 1 21 0 902 156 43 76 chr12 103903366 103903577 -40378912 + MER20 DNA MER1_type 1 204 -15 195 42 0 0 chr12 103905073 103905097 -40377392 + (TG)n Simple_repeat Simple_repeat 2 25 0 262 325 185 7 chr12 103907294 103907445 -40375044 - MIR SINE MIR -68 194 17 1243 296 36 14 chr12 103908132 103908572 -40373917 - MLT1J2 LTR MaLR 0 450 1 2016 128 33 0 chr12 103909388 103909717 -40372772 - MER46B DNA MER2_type -21 215 1 202 365 132 12 chr12 103910305 103910472 -40372017 + L2 LINE L2 2866 3052 -220 368 185 31 108 chr12 103910778 103910908 -40371581 + MER103 DNA DNA 46 165 -1 2345 51 3 3 chr12 103912366 103912662 -40369827 - L1PA7 LINE L1 -10 6144 5849 2119 131 0 23 chr12 103912917 103913222 -40369267 - AluSx SINE Alu -14 298 1 1191 279 56 35 chr12 103913403 103913886 -40368603 - MLT1J LTR MaLR -18 493 1 269 245 157 10 chr12 103914181 103914283 -40368206 - L2 LINE L2 0 3313 3197 191 341 58 35 chr12 103914426 103914599 -40367890 - L2 LINE L2 -558 2756 2580 225 318 12 103 chr12 103914644 103914713 -40367776 + MIR SINE MIR 31 105 -157 1440 208 32 48 chr12 103914713 103915092 -40367397 - MLT1A2 LTR MaLR 0 374 2 225 318 12 103 chr12 103915092 103915264 -40367225 + MIR SINE MIR 105 250 -12 244 389 28 19 chr12 103915324 103915535 -40366954 - L2 LINE L2 -817 2497 2285 212 326 35 12 chr12 103916029 103916115 -40366374 - MIR SINE MIR -109 153 66 626 323 75 33 chr12 103916514 103916873 -40365616 + L2 LINE L2 2004 2377 -937 333 0 0 0 chr12 103916988 103917025 -40365464 + (TAA)n Simple_repeat Simple_repeat 1 37 0 442 295 52 6 chr12 103917640 103917813 -40364676 - MER117 DNA MER1_type -15 182 2 202 260 182 0 chr12 103918846 103918923 -40363566 + L2 LINE L2 3174 3264 -8 415 312 188 7 chr12 103919544 103919698 -40362791 + MIR SINE MIR 81 262 0 341 286 76 43 chr12 103920129 103920314 -40362175 - MIR SINE MIR -3 259 69 21 0 0 0 chr12 103921778 103921799 -40360690 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr12 103922668 103922710 -40359779 + (CA)n Simple_repeat Simple_repeat 2 43 0 611 226 58 53 chr12 103922722 103922794 -40359695 + MER3 DNA MER1_type 1 71 -138 2224 147 3 3 chr12 103922794 103923128 -40359361 + MER1B DNA MER1_type 4 337 0 611 226 58 53 chr12 103923128 103923263 -40359226 + MER3 DNA MER1_type 71 209 0 295 297 33 0 chr12 103923265 103923356 -40359133 + MIR SINE MIR 33 126 -136 779 275 178 35 chr12 103923526 103923981 -40358508 - MLT1K LTR MaLR 0 588 69 565 274 29 61 chr12 103924290 103924535 -40357954 + MLT1J1 LTR MaLR 202 438 -8 189 323 0 31 chr12 103924957 103925022 -40357467 - MIR SINE MIR -109 99 37 21 36 0 0 chr12 103925192 103925220 -40357269 + AT_rich Low_complexity Low_complexity 1 28 0 236 319 69 14 chr12 103925736 103925880 -40356609 + L1M4 LINE L1 458 609 -5671 1609 260 62 49 chr12 103925980 103926525 -40355964 + L1M4 LINE L1 754 1291 -5272 2196 106 14 0 chr12 103926525 103926807 -40355682 + AluSx SINE Alu 1 286 -26 372 59 0 0 chr12 103926807 103926858 -40355631 + (CCAA)n Simple_repeat Simple_repeat 2 52 0 1609 260 62 49 chr12 103926858 103927893 -40354596 + L1M4 LINE L1 1290 2432 -4131 747 251 0 5 chr12 103927945 103928168 -40354321 + L1M4 LINE L1 2359 2580 -3802 210 289 0 0 chr12 103928168 103928213 -40354276 - MER5B DNA MER1_type -128 50 6 285 266 109 39 chr12 103928968 103929096 -40353393 - MER5A DNA MER1_type -46 143 7 322 335 49 27 chr12 103929470 103929655 -40352834 + MIR SINE MIR 20 208 -54 1891 137 0 25 chr12 103930115 103930462 -40352027 + AluSx SINE Alu 5 344 0 247 305 0 0 chr12 103932734 103932793 -40349696 + polypyrimidine Low_complexity Low_complexity 1 59 0 24 32 0 0 chr12 103932818 103932849 -40349640 + AT_rich Low_complexity Low_complexity 1 31 0 183 206 0 143 chr12 103934243 103934304 -40348185 - L3 LINE CR1 0 1577 1526 521 184 28 28 chr12 103934304 103934413 -40348076 - MER5B DNA MER1_type 0 178 70 232 338 22 43 chr12 103936810 103936949 -40345540 + L2 LINE L2 2681 2816 -498 673 279 90 21 chr12 103936953 103937186 -40345303 + MIR SINE MIR 14 262 0 343 333 201 18 chr12 103937193 103937577 -40344912 + L2 LINE L2 2816 3269 -3 202 291 58 35 chr12 103938350 103938436 -40344053 + L2 LINE L2 3190 3277 -36 270 253 189 0 chr12 103939076 103939171 -40343318 - MIR3 SINE MIR -41 167 55 991 261 78 44 chr12 103939239 103939884 -40342605 - L2 LINE L2 -99 3214 2544 278 318 56 24 chr12 103939920 103939952 -40342537 - L2 LINE L2 -5 3308 3278 950 157 70 43 chr12 103939952 103940182 -40342307 + MER46A DNA MER2_type 1 236 0 278 318 56 24 chr12 103940182 103940275 -40342214 - L2 LINE L2 -35 3278 3179 251 349 40 16 chr12 103940594 103940720 -40341769 - L2 LINE L2 -332 2981 2853 435 204 146 22 chr12 103941073 103941210 -40341279 + MIR SINE MIR 4 157 -105 1653 193 75 57 chr12 103941210 103941763 -40340726 - MER34B LTR ERV1 -1 564 11 481 266 0 0 chr12 103941763 103941872 -40340617 + MIR SINE MIR 154 262 0 387 345 156 12 chr12 103942216 103942553 -40339936 - L2 LINE L2 -452 2862 2430 1838 121 110 7 chr12 103942553 103942834 -40339655 + AluSg SINE Alu 1 310 0 387 345 156 12 chr12 103942834 103942991 -40339498 - L2 LINE L2 -884 2430 2297 424 317 7 14 chr12 103943691 103943833 -40338656 - L2 LINE L2 -5 3308 3168 460 172 0 21 chr12 103943892 103943985 -40338504 + AluJ/FRAM SINE Alu 222 312 0 532 160 10 24 chr12 103944276 103944399 -40338090 - MSTC LTR MaLR -235 130 1 29 0 0 0 chr12 103945836 103945865 -40336624 + AT_rich Low_complexity Low_complexity 1 29 0 281 335 125 28 chr12 103945882 103946306 -40336183 - L2 LINE L2 -451 2863 2399 468 324 11 11 chr12 103946386 103946568 -40335921 - MIR SINE MIR -54 208 27 198 267 117 17 chr12 103946535 103946595 -40335894 + MIR SINE MIR 32 97 -165 * 201 217 22 22 chr12 103947087 103947133 -40335356 - MER5B DNA MER1_type -132 46 1 440 204 19 46 chr12 103947277 103947385 -40335104 + L2 LINE L2 3183 3287 -26 379 199 96 22 chr12 103947448 103947584 -40334905 + L1ME3A LINE L1 5806 5951 -219 1951 126 0 4 chr12 103947848 103948118 -40334371 + AluSx SINE Alu 43 311 -1 304 322 93 0 chr12 103948473 103948591 -40333898 + MIR3 SINE MIR 27 155 -53 236 281 0 18 chr12 103948922 103948979 -40333510 + MER5A DNA MER1_type 68 123 -66 846 229 118 27 chr12 103950965 103951497 -40330992 - MLT1G3 LTR MaLR 0 555 1 482 310 78 92 chr12 103951924 103952370 -40330119 + HAL1b LINE L1 56 494 -854 2241 92 3 0 chr12 103952370 103952685 -40329804 + AluY SINE Alu 1 311 0 482 310 78 92 chr12 103952685 103952800 -40329689 + HAL1b LINE L1 494 609 -739 270 254 54 78 chr12 103953607 103953732 -40328757 + HAL1 LINE L1 986 1106 -1401 2487 90 0 0 chr12 103953732 103954043 -40328446 + AluSp SINE Alu 1 311 -2 270 254 54 78 chr12 103954043 103954122 -40328367 + HAL1 LINE L1 1106 1185 -1322 1548 106 8 16 chr12 103954146 103954400 -40328089 + L1PB2 LINE L1 5668 5919 -232 1460 86 9 27 chr12 103954484 103954706 -40327783 + L1PB2 LINE L1 5934 6151 0 209 211 0 58 chr12 103954731 103954783 -40327706 - L2 LINE L2 -1391 1923 1875 386 314 51 97 chr12 103956856 103957070 -40325419 + L2 LINE L2 2545 2767 -547 1058 151 11 0 chr12 103957070 103957249 -40325240 - L1PB4 LINE L1 -12 6144 5964 386 314 51 97 chr12 103957249 103957343 -40325146 + L2 LINE L2 2767 2864 -450 677 196 156 60 chr12 103957343 103957542 -40324947 + MER20 DNA MER1_type 2 219 0 386 314 51 97 chr12 103957542 103957685 -40324804 + L2 LINE L2 2864 2976 -338 218 364 68 17 chr12 103957799 103957917 -40324572 + L2 LINE L2 3141 3264 -8 320 339 29 17 chr12 103960729 103960903 -40321586 - L1MC4a LINE L1 -395 7413 7238 599 239 19 72 chr12 103960903 103961166 -40321323 - L1MC5 LINE L1 -740 7221 6973 28 29 0 0 chr12 103961884 103961919 -40320570 + AT_rich Low_complexity Low_complexity 1 35 0 871 119 57 17 chr12 103962012 103962188 -40320301 - MER53 DNA DNA -2 187 5 265 143 0 0 chr12 103963085 103963127 -40319362 + MLT1K LTR MaLR 201 242 -346 822 112 0 0 chr12 103963823 103963948 -40318541 + L1MA8 LINE L1 6164 6288 -3 5851 123 126 14 chr12 103964761 103964839 -40317650 + Tigger3b DNA MER2_type 1 69 -2959 2166 128 100 28 chr12 103964839 103965238 -40317251 - MSTA LTR MaLR 0 428 1 5851 123 126 14 chr12 103965238 103966266 -40316223 + Tigger3b DNA MER2_type 69 1231 0 757 271 19 0 chr12 103966467 103966681 -40315808 - L1ME LINE L1 -386 5735 5518 2447 91 120 5 chr12 103966719 103967103 -40315386 - MSTA LTR MaLR 0 428 1 242 307 100 0 chr12 103967267 103967407 -40315082 - L1ME4a LINE L1 -4 6117 5964 508 238 0 0 chr12 103967424 103967525 -40314964 - MER5B DNA MER1_type 0 178 78 334 323 83 38 chr12 103967584 103967850 -40314639 + L2 LINE L2 2155 2432 -882 1269 219 67 30 chr12 103967874 103968378 -40314111 + MLT1E LTR MaLR 10 593 0 381 341 84 65 chr12 103968384 103968897 -40313592 + L2 LINE L2 2502 3087 -185 359 282 139 33 chr12 103969664 103970001 -40312488 - HAL1b LINE L1 -645 703 331 232 240 170 20 chr12 103971331 103971431 -40311058 - MIR SINE MIR -9 253 139 301 277 35 21 chr12 103974761 103974902 -40307587 - L2 LINE L2 -275 2997 2855 204 234 43 0 chr12 103975023 103975070 -40307419 - MER91A DNA MER1_type 0 196 148 1207 249 79 26 chr12 103975084 103975595 -40306894 - MLT1G LTR MaLR 0 590 1 343 326 170 14 chr12 103975635 103975782 -40306707 - MER91A DNA MER1_type -26 170 1 27 0 0 0 chr12 103975906 103975933 -40306556 + AT_rich Low_complexity Low_complexity 1 27 0 2373 103 0 0 chr12 103976091 103976393 -40306096 - AluSq SINE Alu -11 302 1 669 225 243 7 chr12 103977068 103977344 -40305145 + MLT1A2 LTR MaLR 25 374 0 243 211 4 6 chr12 103977369 103977625 -40304864 + AluJo SINE Alu 3 302 0 1232 109 20 40 chr12 103977857 103978058 -40304431 + AluSg/x SINE Alu 110 306 -3 414 171 24 0 chr12 103978823 103978905 -40303584 - HsTC2 DNA Tc2 -1813 85 2 24 0 0 0 chr12 103978943 103978967 -40303522 + AT_rich Low_complexity Low_complexity 1 24 0 244 232 36 29 chr12 103979024 103979097 -40303392 + (TA)n Simple_repeat Simple_repeat 2 78 -62 8222 125 20 2 chr12 103979097 103980373 -40302116 - HSMAR2 DNA Mariner -1 1301 4 244 232 36 29 chr12 103980373 103980437 -40302052 + (TA)n Simple_repeat Simple_repeat 78 140 0 445 323 112 58 chr12 103980498 103981478 -40301011 - L1MC4a LINE L1 -747 5679 5140 1226 145 10 0 chr12 103981504 103981711 -40300778 + MER2 DNA MER2_type 2 210 -135 357 260 20 0 chr12 103982365 103982465 -40300024 + MER20 DNA MER1_type 118 219 0 303 28 0 0 chr12 103982877 103982913 -40299576 + (CA)n Simple_repeat Simple_repeat 1 36 0 1730 146 78 63 chr12 103982955 103983338 -40299151 - MLT1B LTR MaLR -1 389 1 1128 59 0 0 chr12 103983550 103983686 -40298803 - AluY SINE Alu -15 296 161 307 311 73 29 chr12 103983854 103984005 -40298484 - L1MC4a LINE L1 -4061 2546 2382 1091 174 0 0 chr12 103984005 103984172 -40298317 - FAM SINE Alu -8 167 1 307 311 73 29 chr12 103984172 103984226 -40298263 - L1MC4a LINE L1 -4225 2382 2332 375 242 36 65 chr12 103984510 103984809 -40297680 - HAL1b LINE L1 -923 425 168 300 239 28 55 chr12 103984873 103984982 -40297507 - L1MC4a LINE L1 -4316 2110 2005 212 184 20 0 chr12 103984985 103985034 -40297455 + (TA)n Simple_repeat Simple_repeat 2 51 0 2708 23 0 0 chr12 103985071 103985377 -40297112 - AluY SINE Alu -5 306 1 26 74 0 0 chr12 103985653 103985707 -40296782 + AT_rich Low_complexity Low_complexity 1 54 0 2073 143 3 10 chr12 103987756 103988070 -40294419 + AluSx SINE Alu 1 312 0 348 344 149 9 chr12 103988579 103988794 -40293695 - MIR SINE MIR -13 249 5 2089 140 0 7 chr12 103988914 103989214 -40293275 - AluSq SINE Alu -15 298 1 795 296 21 33 chr12 103989340 103989580 -40292909 - MIR SINE MIR 0 262 26 288 182 182 25 chr12 103990469 103990590 -40291899 - L1ME4a LINE L1 -14 6107 5968 308 330 36 18 chr12 103990697 103990809 -40291680 - MIR SINE MIR -141 121 8 241 340 21 11 chr12 103991067 103991161 -40291328 - L2 LINE L2 -192 3080 2986 493 291 135 59 chr12 103991239 103991476 -40291013 + MIR SINE MIR 2 256 -6 282 250 10 87 chr12 103991835 103991939 -40290550 + MLT1K LTR MaLR 11 106 -482 389 307 163 19 chr12 103992056 103992326 -40290163 + MLT1K LTR MaLR 263 571 -17 448 372 62 0 chr12 103992339 103992565 -40289924 - L2 LINE L2 -841 2473 2234 285 305 0 44 chr12 103993128 103993229 -40289260 - MER5A DNA MER1_type -13 166 81 * 326 293 109 14 chr12 103993227 103993374 -40289115 + MIR3 SINE MIR 43 203 -5 198 314 0 0 chr12 103994252 103994303 -40288186 - MIR SINE MIR -9 253 203 593 221 85 48 chr12 103994316 103994536 -40287953 - MIR SINE MIR 0 262 37 2650 93 27 0 chr12 103994716 103995081 -40287408 + THE1C LTR MaLR 1 375 0 2205 120 48 28 chr12 103995461 103995818 -40286671 - THE1B LTR MaLR 0 364 1 682 313 82 61 chr12 103995938 103996658 -40285831 + L2 LINE L2 1849 2583 -731 493 248 148 38 chr12 103996643 103996853 -40285636 + L2 LINE L2 3080 3312 -1 * 993 303 149 41 chr12 103996816 103997878 -40284611 - L2 LINE L2 -756 2558 1383 355 287 51 8 chr12 103999077 103999213 -40283276 + MIR SINE MIR 15 154 -62 227 346 13 0 chr12 103999895 103999973 -40282516 + L2 LINE L2 2956 3034 -238 4424 150 23 0 chr12 104000107 104000841 -40281648 - Tigger1 DNA MER2_type -1644 774 24 1400 236 25 28 chr12 104000965 104001329 -40281160 + MLT1A1 LTR MaLR 1 363 -2 270 0 0 0 chr12 104003125 104003155 -40279334 + (CA)n Simple_repeat Simple_repeat 2 31 0 2085 148 0 3 chr12 104003214 104003518 -40278971 - AluJb SINE Alu -9 303 1 592 225 143 11 chr12 104004160 104004482 -40278007 + LTR33A LTR ERVL 81 521 -2 342 0 0 0 chr12 104005274 104005312 -40277177 + (T)n Simple_repeat Simple_repeat 1 38 0 402 261 22 51 chr12 104005713 104005851 -40276638 + L3 LINE CR1 342 475 -1102 22 35 0 0 chr12 104006550 104006579 -40275910 + AT_rich Low_complexity Low_complexity 1 29 0 1881 167 3 0 chr12 104006860 104007159 -40275330 + AluSx SINE Alu 13 312 0 22 0 0 0 chr12 104007192 104007214 -40275275 + AT_rich Low_complexity Low_complexity 1 22 0 648 238 44 101 chr12 104007338 104007431 -40275058 - MIR SINE MIR -27 235 138 1224 111 0 11 chr12 104007431 104007620 -40274869 - L1PA13 LINE L1 -12 6151 5965 648 238 44 101 chr12 104007620 104007774 -40274715 - MIR SINE MIR -124 138 2 2378 245 45 6 chr12 104008476 104009122 -40273367 + L1MEc LINE L1 144 814 -5582 560 285 59 5 chr12 104009129 104009315 -40273174 + MIR SINE MIR 53 248 -14 2355 86 0 3 chr12 104009334 104009635 -40272854 - AluY SINE Alu -11 300 1 2274 81 3 3 chr12 104009763 104010061 -40272428 - AluSc SINE Alu -11 298 1 546 299 0 7 chr12 104011530 104011674 -40270815 + MIR SINE MIR 30 172 -90 1656 174 55 44 chr12 104011942 104012303 -40270186 - MLT1A1 LTR MaLR 0 365 1 2038 184 5 14 chr12 104012346 104013052 -40269437 + L1MC1 LINE L1 4852 5548 -753 14171 171 18 17 chr12 104013065 104018537 -40263952 - L1PB1 LINE L1 -1 6866 1392 4650 145 8 5 chr12 104018606 104019377 -40263112 + L1MC1 LINE L1 5555 6327 -6 207 344 0 21 chr12 104019458 104019554 -40262935 - MIR3 SINE MIR -5 203 110 363 204 43 43 chr12 104020676 104020769 -40261720 + L1MC4 LINE L1 6614 6706 -1336 34 42 0 0 chr12 104020769 104020817 -40261672 + AT_rich Low_complexity Low_complexity 1 48 0 1602 181 0 11 chr12 104021226 104021502 -40260987 - AluSx SINE Alu -7 305 33 610 241 123 0 chr12 104021990 104022152 -40260337 + MIR SINE MIR 1 182 -80 482 200 76 0 chr12 104023941 104024046 -40258443 - MER81 DNA DNA 0 114 2 1035 145 78 0 chr12 104024146 104024339 -40258150 - MER3 DNA MER1_type -1 208 1 831 249 14 54 chr12 104024800 104025021 -40257468 + MIR SINE MIR 20 231 -31 7529 25 2 1 chr12 104025024 104026059 -40256430 + L1PA3 LINE L1 5117 6152 -3 2374 67 0 55 chr12 104027470 104027797 -40254692 - AluY SINE Alu -2 309 1 2090 136 17 0 chr12 104028088 104028367 -40254122 + AluSx SINE Alu 1 287 -25 210 37 0 0 chr12 104028367 104028394 -40254095 + (TA)n Simple_repeat Simple_repeat 2 28 0 2090 136 17 0 chr12 104028394 104028415 -40254074 + AluSx SINE Alu 287 306 -6 883 289 12 16 chr12 104028572 104028825 -40253664 - MIR SINE MIR -2 260 9 277 155 107 117 chr12 104029111 104029214 -40253275 - MIR SINE MIR -89 173 72 182 256 0 0 chr12 104030076 104030115 -40252374 + L2 LINE L2 3210 3248 -24 1666 179 14 17 chr12 104030449 104030745 -40251744 + AluJo SINE Alu 1 295 -17 489 276 41 54 chr12 104030865 104030961 -40251528 - MER58A DNA MER1_type -2200 220 124 2116 107 4 0 chr12 104030961 104031261 -40251228 + AluSx SINE Alu 1 301 0 2118 128 76 17 chr12 104031271 104031615 -40250874 + THE1B LTR MaLR 1 364 0 489 276 41 54 chr12 104031615 104031727 -40250762 - MER58A DNA MER1_type -2305 115 3 286 183 49 12 chr12 104032736 104032818 -40249671 - L1ME4a LINE L1 -4 6117 6033 190 287 130 17 chr12 104032999 104033114 -40249375 - MIR SINE MIR -62 146 19 2124 135 3 3 chr12 104033350 104033662 -40248827 + AluSq SINE Alu 1 312 -1 2436 89 0 0 chr12 104035003 104035316 -40247173 + AluSq SINE Alu 1 313 0 635 228 58 23 chr12 104035493 104035664 -40246825 - MER5B DNA MER1_type -1 177 1 211 309 128 37 chr12 104036216 104036404 -40246085 - L2 LINE L2 0 3313 3109 607 211 24 0 chr12 104037052 104037175 -40245314 + FLAM_A SINE Alu 13 138 -4 184 206 0 0 chr12 104037237 104037271 -40245218 - MIR SINE MIR 0 262 229 728 226 53 26 chr12 104037355 104037545 -40244944 - MIR SINE MIR -34 228 34 198 118 0 0 chr12 104037626 104037660 -40244829 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 227 352 48 9 chr12 104038829 104038934 -40243555 - L2 LINE L2 -216 3056 2948 226 302 120 40 chr12 104039170 104039395 -40243094 - L2 LINE L2 -710 2604 2362 977 215 15 82 chr12 104039899 104040229 -40242260 + MSTD LTR MaLR 89 396 0 1905 196 23 25 chr12 104040600 104040998 -40241491 + MLT2C1 LTR ERVL 1 397 0 326 308 19 9 chr12 104041267 104041374 -40241115 + L2 LINE L2 3200 3307 -6 181 224 12 24 chr12 104041751 104041836 -40240653 + GA-rich Low_complexity Low_complexity 2 85 0 25 0 0 0 chr12 104043028 104043053 -40239436 + AT_rich Low_complexity Low_complexity 1 25 0 389 260 125 51 chr12 104043326 104043957 -40238532 - L1MDa LINE L1 -4475 2482 1805 201 157 0 59 chr12 104043994 104044045 -40238444 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 434 258 54 54 chr12 104044099 104044359 -40238130 - L1MDa LINE L1 -5181 1766 1377 1847 203 65 11 chr12 104045196 104045639 -40236850 + MLT1C LTR MaLR 1 467 0 708 310 47 35 chr12 104046211 104046550 -40235939 - MLT1I LTR MaLR 0 409 67 716 240 0 13 chr12 104046604 104046754 -40235735 - MIR SINE MIR -92 170 23 1671 219 31 54 chr12 104048680 104049162 -40233327 - MLT1D LTR MaLR 0 505 34 1530 176 75 29 chr12 104049162 104049508 -40232981 + MLT1A1 LTR MaLR 4 365 0 1671 219 31 54 chr12 104049508 104049541 -40232948 - MLT1D LTR MaLR -471 34 2 276 348 35 14 chr12 104049992 104050133 -40232356 + L2 LINE L2 2565 2708 -606 515 272 139 12 chr12 104050149 104050322 -40232167 + MIR SINE MIR 58 252 -10 21 0 0 0 chr12 104050715 104050736 -40231753 + AT_rich Low_complexity Low_complexity 1 21 0 441 0 0 0 chr12 104050747 104050796 -40231693 + (CA)n Simple_repeat Simple_repeat 2 50 0 212 255 0 0 chr12 104050844 104050891 -40231598 - MIR SINE MIR 0 262 216 921 188 0 18 chr12 104051098 104051263 -40231226 - FRAM SINE Alu -2 164 3 236 130 22 0 chr12 104053532 104053578 -40228911 + (TG)n Simple_repeat Simple_repeat 2 48 0 243 88 0 0 chr12 104054440 104054474 -40228015 + (A)n Simple_repeat Simple_repeat 1 34 0 892 273 130 41 chr12 104055889 104056741 -40225748 + L2 LINE L2 2367 3276 -37 204 40 0 0 chr12 104056752 104056777 -40225712 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2447 99 0 0 chr12 104057050 104057363 -40225126 - AluSq SINE Alu 0 313 1 860 275 31 9 chr12 104058839 104059068 -40223421 + MIR SINE MIR 17 250 -12 332 340 85 13 chr12 104059079 104059232 -40223257 + MIR SINE MIR 28 191 -71 536 323 77 6 chr12 104059326 104059664 -40222825 + L1MC4a LINE L1 5542 5903 -1905 284 257 52 96 chr12 104061130 104061266 -40221223 + MER91B DNA MER1_type 1 130 -60 3783 119 58 8 chr12 104062019 104062624 -40219865 - MER41B LTR ERV1 0 635 1 497 327 155 23 chr12 104062692 104063209 -40219280 - MLT1K LTR MaLR -2 586 2 298 254 45 0 chr12 104063520 104063630 -40218859 - L1ME4a LINE L1 -31 6090 5976 731 189 8 0 chr12 104064334 104064466 -40218023 + FLAM_A SINE Alu 1 133 0 27 0 0 0 chr12 104064467 104064494 -40217995 + AT_rich Low_complexity Low_complexity 1 27 0 2149 134 3 0 chr12 104064597 104064902 -40217587 + AluSx SINE Alu 1 306 -6 240 281 267 4 chr12 104065434 104065704 -40216785 + MLT1K LTR MaLR 248 588 0 278 281 108 49 chr12 104065782 104065967 -40216522 + L2 LINE L2 2034 2229 -1085 271 226 0 36 chr12 104065971 104066055 -40216434 - MLT1K LTR MaLR 0 588 508 412 248 0 83 chr12 104066245 104066366 -40216123 - MLT1K LTR MaLR -368 220 110 267 311 175 32 chr12 104066464 104066715 -40215774 + L2 LINE L2 2230 2516 -798 252 232 101 20 chr12 104066822 104066921 -40215568 + MLT1L LTR MaLR 507 613 -2 31 68 0 0 chr12 104066963 104067022 -40215467 + AT_rich Low_complexity Low_complexity 1 59 0 328 304 0 33 chr12 104067056 104067148 -40215341 + L2 LINE L2 3181 3269 -3 240 310 0 14 chr12 104067297 104067368 -40215121 + L2 LINE L2 2990 3059 -213 337 268 138 65 chr12 104067438 104067867 -40214622 - Charlie8 DNA MER1_type -1885 532 73 263 360 176 11 chr12 104068045 104068428 -40214061 + L2 LINE L2 2657 3097 -175 2027 103 4 4 chr12 104069246 104069518 -40212971 + AluSc SINE Alu 17 288 -21 848 176 0 14 chr12 104069627 104069769 -40212720 + FRAM SINE Alu 4 143 -33 241 318 48 0 chr12 104070726 104070789 -40211700 - L2 LINE L2 0 3272 3207 2851 207 13 43 chr12 104070789 104071413 -40211076 - MER77 LTR ERV1 0 605 1 1146 254 114 41 chr12 104071530 104071755 -40210734 - L2 LINE L2 -9 3304 3097 2848 3 0 3 chr12 104071755 104072067 -40210422 - AluYa5 SINE Alu 0 311 1 1146 254 114 41 chr12 104072067 104072621 -40209868 - L2 LINE L2 -216 3097 2469 2898 94 53 2 chr12 104072621 104073034 -40209455 + MER57B LTR ERV1 1 434 0 1146 254 114 41 chr12 104073034 104073053 -40209436 - L2 LINE L2 -844 2469 2453 1099 177 0 102 chr12 104073085 104073339 -40209150 + MER77 LTR ERV1 155 382 -223 23 0 0 0 chr12 104073339 104073362 -40209127 + AT_rich Low_complexity Low_complexity 1 23 0 306 257 75 79 chr12 104073625 104073728 -40208761 - MLT1L LTR MaLR -8 607 505 1450 212 24 43 chr12 104073728 104073888 -40208601 + MLT1A1 LTR MaLR 1 162 -203 1925 146 4 4 chr12 104073888 104074169 -40208320 + AluSc SINE Alu 11 291 -18 1450 212 24 43 chr12 104074169 104074380 -40208109 + MLT1A1 LTR MaLR 162 365 0 306 257 75 79 chr12 104074380 104074517 -40207972 - MLT1L LTR MaLR -110 505 368 2278 254 146 30 chr12 104074729 104075385 -40207104 - L2 LINE L2 -353 2961 2172 1662 178 34 17 chr12 104075385 104075556 -40206933 - AluJo SINE Alu -15 297 117 246 32 0 0 chr12 104075556 104075587 -40206902 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1662 178 34 17 chr12 104075587 104075707 -40206782 - AluJo SINE Alu -195 117 1 2278 254 146 30 chr12 104075707 104075946 -40206543 - L2 LINE L2 -1142 2172 1962 487 279 26 47 chr12 104076321 104076511 -40205978 - MIR SINE MIR -59 203 18 321 26 0 0 chr12 104076704 104076742 -40205747 + (CACCC)n Simple_repeat Simple_repeat 3 40 0 198 0 0 0 chr12 104077218 104077240 -40205249 + (A)n Simple_repeat Simple_repeat 1 22 0 2267 95 0 3 chr12 104077500 104077839 -40204650 - AluSq SINE Alu 0 313 1 504 224 128 0 chr12 104078624 104078749 -40203740 + MER5B DNA MER1_type 9 149 -29 404 276 133 15 chr12 104078950 104079175 -40203314 - MIR SINE MIR -12 250 3 200 273 61 15 chr12 104081546 104081612 -40200877 - L3 LINE CR1 -1174 403 335 282 255 19 9 chr12 104082316 104082422 -40200067 + (TA)n Simple_repeat Simple_repeat 1 107 0 539 268 118 27 chr12 104083427 104083647 -40198842 - MIR SINE MIR -15 247 8 2081 156 9 0 chr12 104085712 104086052 -40196437 - MER7A DNA MER2_type -5 341 1 200 340 0 21 chr12 104086640 104086737 -40195752 + CT-rich Low_complexity Low_complexity 2 96 0 265 154 23 62 chr12 104086738 104086868 -40195621 + (TCTA)n Simple_repeat Simple_repeat 4 128 0 806 47 23 23 chr12 104086900 104087029 -40195460 + (TCTA)n Simple_repeat Simple_repeat 2 130 0 1338 195 10 42 chr12 104087385 104087526 -40194963 - MLT1F LTR MaLR 0 542 398 1634 192 42 99 chr12 104087526 104087919 -40194570 - MLT1C LTR MaLR 0 467 106 2448 68 0 26 chr12 104087919 104088229 -40194260 - AluY SINE Alu -5 306 5 1634 192 42 99 chr12 104088229 104088330 -40194159 - MLT1C LTR MaLR -361 106 1 1338 195 10 42 chr12 104088330 104088496 -40193993 - MLT1F LTR MaLR -144 398 245 895 243 155 70 chr12 104088550 104088859 -40193630 - MER39 LTR ERV1 0 707 426 1814 164 73 14 chr12 104088859 104089213 -40193276 + THE1C LTR MaLR 1 375 0 895 243 155 70 chr12 104089213 104089394 -40193095 - MER39 LTR ERV1 -281 426 1 212 339 61 9 chr12 104089486 104089601 -40192888 + L2 LINE L2 3190 3310 -3 303 330 0 9 chr12 104090808 104090914 -40191575 - MIR3 SINE MIR -6 202 98 2283 88 17 0 chr12 104091476 104091773 -40190716 - AluSq SINE Alu -11 302 1 271 333 13 0 chr12 104091853 104091928 -40190561 + MIR SINE MIR 72 147 -61 416 296 0 0 chr12 104092088 104092196 -40190293 + L2 LINE L2 3188 3295 -18 750 233 0 17 chr12 104092512 104092684 -40189805 + MER8 DNA MER2_type 11 179 -60 288 254 0 0 chr12 104092660 104092723 -40189766 + MER2 DNA MER2_type 283 345 0 * 1822 190 0 3 chr12 104093032 104093327 -40189162 - AluJo SINE Alu -18 294 1 264 213 0 0 chr12 104093773 104093834 -40188655 + A-rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr12 104093991 104094012 -40188477 + AT_rich Low_complexity Low_complexity 1 21 0 426 339 11 17 chr12 104094168 104094348 -40188141 - MIR3 SINE MIR -14 194 16 1800 164 76 9 chr12 104094388 104094730 -40187759 + MLT1A1 LTR MaLR 1 365 0 611 310 39 13 chr12 104095037 104095266 -40187223 - MLT1K LTR MaLR -343 245 11 3635 173 33 10 chr12 104096762 104097450 -40185039 - MER39 LTR ERV1 -3 704 1 2100 219 17 44 chr12 104097483 104098008 -40184481 + L1PA16 LINE L1 112 622 -6227 1127 173 9 13 chr12 104097982 104098207 -40184282 + L1PA16 LINE L1 2213 2436 -4413 * 5079 170 10 3 chr12 104098200 104099942 -40182547 + L1PA16 LINE L1 5114 6869 0 453 317 77 9 chr12 104100104 104100442 -40182047 + L1MC4 LINE L1 7135 7495 -547 2390 157 57 9 chr12 104102171 104102611 -40179878 + LOR1b LTR ERV1 1 461 0 446 180 56 0 chr12 104102817 104102906 -40179583 + Tigger3(Golem) DNA MER2_type 12 105 -2924 4163 99 54 33 chr12 104102911 104103639 -40178850 + Tigger3(Golem) DNA MER2_type 2287 3029 0 2693 45 0 3 chr12 104103699 104104011 -40178478 - AluY SINE Alu 0 311 1 2727 141 17 76 chr12 104104044 104104602 -40177887 - MER34C LTR ERV1 -5 580 59 3006 154 31 6 chr12 104104602 104105120 -40177369 - LTR26B LTR ERV1 0 531 1 2727 141 17 76 chr12 104105120 104105164 -40177325 - MER34C LTR ERV1 -526 59 14 2456 247 50 14 chr12 104105679 104105996 -40176493 + MER21B LTR ERV1 143 447 -416 2473 138 13 0 chr12 104105996 104106394 -40176095 + MER57A LTR ERV1 1 403 0 2456 247 50 14 chr12 104106394 104106723 -40175766 + MER21B LTR ERV1 447 812 -51 555 343 74 19 chr12 104106887 104107251 -40175238 + L2 LINE L2 2275 2658 -656 759 257 71 61 chr12 104107275 104107447 -40175042 - L2 LINE L2 0 3313 3135 840 158 0 0 chr12 104107447 104107580 -40174909 + FLAM_C SINE Alu 1 133 0 759 257 71 61 chr12 104107580 104107703 -40174786 - L2 LINE L2 -178 3135 3015 726 227 62 127 chr12 104107709 104108017 -40174472 + LTR8 LTR ERV1 1 288 -439 316 193 0 0 chr12 104108062 104108119 -40174370 + LTR8A LTR ERV1 287 343 -384 347 80 0 0 chr12 104108122 104108172 -40174317 - MADE1 DNA Mariner 0 80 31 1265 184 93 41 chr12 104108181 104108545 -40173944 + LTR8A LTR ERV1 345 727 0 822 298 119 31 chr12 104108556 104108920 -40173569 - L2 LINE L2 -313 3000 2611 376 307 39 20 chr12 104108915 104109068 -40173421 + L2 LINE L2 2716 2871 -443 * 1675 180 10 20 chr12 104109591 104109885 -40172604 + AluJo SINE Alu 2 292 -20 2253 109 7 7 chr12 104109977 104110279 -40172210 + AluSg1 SINE Alu 1 302 -7 378 205 36 12 chr12 104111375 104111458 -40171031 - MER91A DNA MER1_type -2 194 110 328 264 55 61 chr12 104111746 104111909 -40170580 - L2 LINE L2 -91 3222 3061 258 106 16 52 chr12 104112560 104112624 -40169865 - MLT2D LTR ERVL 0 546 341 1969 167 3 16 chr12 104112696 104113067 -40169422 - MLT2D LTR ERVL -48 366 1 492 258 174 13 chr12 104113237 104113392 -40169097 - MER5A DNA MER1_type -1 188 9 354 255 114 87 chr12 104113516 104113700 -40168789 - MER5A DNA MER1_type 0 189 1 491 45 45 0 chr12 104114080 104114147 -40168342 + U3 snRNA snRNA 1 70 -147 13233 162 62 11 chr12 104114160 104119951 -40162538 + L1PB1 LINE L1 399 6527 -340 351 44 0 0 chr12 104119951 104119996 -40162493 + (CA)n Simple_repeat Simple_repeat 2 46 0 13233 162 62 11 chr12 104119996 104120350 -40162139 + L1PB1 LINE L1 6527 6862 -5 802 271 102 54 chr12 104120369 104120812 -40161677 - MLT1J LTR MaLR -45 466 3 245 357 37 104 chr12 104120958 104121255 -40161234 - L2 LINE L2 0 3272 2996 228 67 0 0 chr12 104121849 104121879 -40160610 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 789 256 44 106 chr12 104123521 104124068 -40158421 - MLT1H LTR MaLR -2 547 35 755 246 164 5 chr12 104124594 104124814 -40157675 - MIR SINE MIR -1 261 7 281 363 76 13 chr12 104124833 104124990 -40157499 + L2 LINE L2 3096 3262 -10 256 367 44 0 chr12 104125779 104125869 -40156620 + L2 LINE L2 3188 3281 -32 230 81 27 0 chr12 104125882 104125919 -40156570 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 352 294 175 40 chr12 104128491 104128719 -40153770 - L3 LINE CR1 -59 1518 1260 214 281 31 0 chr12 104128762 104128826 -40153663 - MIR SINE MIR -65 197 132 202 315 132 85 chr12 104128890 104129185 -40153304 - L3 LINE CR1 -417 1160 852 323 264 85 28 chr12 104129236 104129342 -40153147 + L2 LINE L2 3161 3272 0 184 282 0 0 chr12 104129766 104129805 -40152684 + MIR SINE MIR 47 85 -123 * 1481 292 85 19 chr12 104129799 104130668 -40151821 + L2 LINE L2 2390 3313 0 1000 223 86 61 chr12 104130730 104131027 -40151462 - MLT1C LTR MaLR 0 464 163 2312 106 0 0 chr12 104131027 104131319 -40151170 - AluSx SINE Alu -20 292 1 1000 223 86 61 chr12 104131319 104131481 -40151008 - MLT1C LTR MaLR -301 163 6 671 361 46 17 chr12 104131596 104131945 -40150544 - L3 LINE CR1 -792 785 427 342 241 120 9 chr12 104131987 104132095 -40150394 - L2 LINE L2 0 3272 3153 2170 107 0 10 chr12 104132128 104132427 -40150062 - AluSg SINE Alu -14 296 1 405 274 34 8 chr12 104132838 104132955 -40149534 - MIR SINE MIR -64 198 79 620 289 28 11 chr12 104133775 104133955 -40148534 - MIR SINE MIR -62 200 18 333 62 0 0 chr12 104134113 104134161 -40148328 + (TC)n Simple_repeat Simple_repeat 1 48 0 333 0 0 0 chr12 104134161 104134198 -40148291 + (TA)n Simple_repeat Simple_repeat 1 37 0 782 133 0 31 chr12 104134198 104134326 -40148163 - FLAM_C SINE Alu -5 128 5 24 0 0 0 chr12 104135482 104135506 -40146983 + AT_rich Low_complexity Low_complexity 1 24 0 281 296 31 56 chr12 104135612 104135774 -40146715 - MER5B DNA MER1_type -20 158 1 347 98 0 0 chr12 104136437 104136488 -40146001 + MIR3 SINE MIR 149 199 -9 2406 149 49 0 chr12 104136701 104137109 -40145380 - MSTC LTR MaLR 0 428 1 217 218 127 18 chr12 104137362 104137417 -40145072 + L2 LINE L2 3204 3264 -8 29 28 0 0 chr12 104137838 104137874 -40144615 + AT_rich Low_complexity Low_complexity 1 36 0 517 303 71 31 chr12 104137963 104138257 -40144232 - MLT1J1 LTR MaLR 0 446 141 257 233 89 22 chr12 104138268 104138358 -40144131 - MLT1J2 LTR MaLR -354 96 1 2847 7 0 0 chr12 104138563 104138872 -40143617 - AluYa5 SINE Alu -2 309 1 322 332 72 67 chr12 104139390 104139779 -40142710 + L2 LINE L2 2285 2675 -639 196 350 90 0 chr12 104139817 104139917 -40142572 + L2 LINE L2 2779 2887 -427 459 280 17 0 chr12 104139981 104140099 -40142390 - MER58A DNA MER1_type 0 120 1 207 222 19 0 chr12 104140099 104140153 -40142336 + L2 LINE L2 2926 2980 -292 204 125 0 0 chr12 104140299 104140331 -40142158 + (T)n Simple_repeat Simple_repeat 1 32 0 2603 198 43 21 chr12 104140372 104140934 -40141555 + MER82 DNA MER2_type 79 652 -1 219 353 12 12 chr12 104141205 104141290 -40141199 + L3 LINE CR1 634 718 -859 523 258 8 0 chr12 104141469 104141593 -40140896 - L2 LINE L2 -5 3308 3184 843 274 104 58 chr12 104141686 104142205 -40140284 - L2 LINE L2 -337 2977 2435 3150 241 72 40 chr12 104142671 104143039 -40139450 - L1ME2 LINE L1 -1 6232 5877 762 113 0 9 chr12 104143039 104143154 -40139335 - FLAM_C SINE Alu -15 118 5 3150 241 72 40 chr12 104143154 104145439 -40137050 - L1ME2 LINE L1 -356 5877 3530 2608 125 70 0 chr12 104145439 104145839 -40136650 - MSTA LTR MaLR 0 428 1 576 370 48 28 chr12 104145858 104146215 -40136274 - L1ME2 LINE L1 -5908 488 125 189 132 0 0 chr12 104146259 104146297 -40136192 + (CA)n Simple_repeat Simple_repeat 1 38 0 237 115 33 16 chr12 104146308 104146369 -40136120 + (TA)n Simple_repeat Simple_repeat 2 63 0 565 197 57 35 chr12 104146848 104147076 -40135413 + L1MC5 LINE L1 7617 7849 -112 189 255 61 102 chr12 104147107 104147205 -40135284 - L2 LINE L2 -21 3251 3158 186 343 0 0 chr12 104147207 104147274 -40135215 - L2 LINE L2 -62 3251 3185 601 268 48 0 chr12 104149776 104149944 -40132545 + MER20 DNA MER1_type 43 218 -1 335 325 139 33 chr12 104150010 104150248 -40132241 + L1MC4a LINE L1 5411 5623 -547 1630 188 7 7 chr12 104150248 104150535 -40131954 + AluJo SINE Alu 1 287 -25 335 325 139 33 chr12 104150535 104150554 -40131935 + L1MC4a LINE L1 5623 5363 -807 342 0 0 0 chr12 104150554 104150592 -40131897 + (CA)n Simple_repeat Simple_repeat 2 39 0 335 325 139 33 chr12 104150592 104150801 -40131688 + L1MC4a LINE L1 5362 5548 -622 628 286 55 32 chr12 104151741 104151961 -40130528 - MIR SINE MIR -6 256 32 22 0 0 0 chr12 104152222 104152244 -40130245 + AT_rich Low_complexity Low_complexity 1 22 0 283 310 23 0 chr12 104153580 104153667 -40128822 - L2 LINE L2 -212 3060 2972 199 278 108 34 chr12 104153719 104153895 -40128594 - L2 LINE L2 -458 2856 2668 293 323 113 65 chr12 104153909 104154433 -40128056 + L2 LINE L2 1998 2546 -768 349 269 15 114 chr12 104154476 104154579 -40127910 - MER5A DNA MER1_type 0 189 77 384 22 0 0 chr12 104154579 104154624 -40127865 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 349 269 15 114 chr12 104154624 104154690 -40127799 - MER5A DNA MER1_type -112 77 40 2132 130 27 32 chr12 104154690 104155066 -40127423 - THE1C LTR MaLR -1 374 1 349 269 15 114 chr12 104155066 104155096 -40127393 - MER5A DNA MER1_type -149 40 9 527 250 0 0 chr12 104155232 104155352 -40127137 - MER58B DNA MER1_type 0 341 222 213 234 0 0 chr12 104155527 104155574 -40126915 + L2 LINE L2 2920 2966 -306 195 316 18 0 chr12 104155765 104155822 -40126667 + L2 LINE L2 3213 3270 -2 322 315 0 0 chr12 104156878 104156967 -40125522 - MIR SINE MIR -66 142 54 21 0 0 0 chr12 104157732 104157753 -40124736 + AT_rich Low_complexity Low_complexity 1 21 0 786 251 27 21 chr12 104158979 104159166 -40123323 + MIR SINE MIR 9 196 -66 199 295 66 0 chr12 104159200 104159261 -40123228 + MIR SINE MIR 198 262 0 210 37 0 0 chr12 104159721 104159748 -40122741 + (T)n Simple_repeat Simple_repeat 1 27 0 362 321 130 28 chr12 104160026 104160239 -40122250 - MIR SINE MIR -29 233 4 594 41 0 0 chr12 104160367 104160440 -40122049 + (TA)n Simple_repeat Simple_repeat 1 73 0 242 226 33 31 chr12 104160840 104160918 -40121571 + MIR SINE MIR 76 153 -69 225 0 0 0 chr12 104161659 104161684 -40120805 + (T)n Simple_repeat Simple_repeat 1 25 0 1809 122 187 92 chr12 104162069 104162535 -40119954 + LTR54 LTR ERV1 1 510 0 255 31 0 0 chr12 104162752 104162784 -40119705 + (TG)n Simple_repeat Simple_repeat 2 33 0 523 128 53 11 chr12 104162931 104163025 -40119464 + MER4A LTR ERV1 1 98 -566 1879 129 3 16 chr12 104163025 104163373 -40119116 + MER4A LTR ERV1 263 664 0 787 198 35 6 chr12 104163720 104163892 -40118597 + MER5B DNA MER1_type 2 178 0 391 336 14 7 chr12 104163943 104164083 -40118406 - MIR3 SINE MIR -7 201 61 336 252 34 75 chr12 104164763 104164910 -40117579 - MIR SINE MIR -54 208 68 280 170 0 6 chr12 104166041 104166100 -40116389 - MLT2D LTR ERVL 0 397 350 580 67 54 20 chr12 104166117 104166266 -40116223 + (TA)n Simple_repeat Simple_repeat 1 154 0 23 0 0 0 chr12 104166289 104166312 -40116177 + AT_rich Low_complexity Low_complexity 1 23 0 252 86 0 0 chr12 104166315 104166350 -40116139 + (GA)n Simple_repeat Simple_repeat 2 36 0 199 0 65 0 chr12 104166357 104166388 -40116101 + (TA)n Simple_repeat Simple_repeat 1 33 0 1450 242 19 14 chr12 104166403 104166767 -40115722 - MLT2D LTR ERVL -48 366 1 219 114 0 0 chr12 104166840 104166875 -40115614 + (TG)n Simple_repeat Simple_repeat 1 35 0 415 172 259 17 chr12 104167214 104167330 -40115159 - MIR SINE MIR -48 214 71 34 0 0 0 chr12 104167931 104167965 -40114524 + AT_rich Low_complexity Low_complexity 1 34 0 294 189 0 0 chr12 104167980 104168033 -40114456 - Alu SINE Alu -249 53 1 302 274 0 0 chr12 104168249 104168311 -40114178 - MIR SINE MIR 0 262 201 394 199 167 112 chr12 104168433 104168753 -40113736 - MLT1G LTR MaLR -7 548 205 248 232 0 2 chr12 104168814 104168881 -40113608 - MLT1F LTR MaLR -466 76 20 200 368 13 0 chr12 104169071 104169147 -40113342 - L2 LINE L2 -355 2959 2883 453 282 35 18 chr12 104170216 104170357 -40112132 - MER5B DNA MER1_type -48 130 1 2375 75 0 0 chr12 104172976 104173270 -40109219 + AluY SINE Alu 2 295 -16 2111 235 62 14 chr12 104174162 104174728 -40107761 - MLT1E LTR MaLR 0 593 1 2169 121 0 3 chr12 104175447 104175737 -40106752 + AluSx SINE Alu 7 295 -17 270 0 0 0 chr12 104176539 104176569 -40105920 + (TG)n Simple_repeat Simple_repeat 2 31 0 190 313 15 15 chr12 104176969 104177036 -40105453 + MIR SINE MIR 47 113 -149 180 77 0 0 chr12 104177487 104177513 -40104976 + (GA)n Simple_repeat Simple_repeat 2 27 0 263 247 12 25 chr12 104177774 104177855 -40104634 - L2 LINE L2 -1069 2245 2166 1762 205 43 3 chr12 104179605 104179956 -40102533 - MLT1A1 LTR MaLR 0 365 1 198 0 0 0 chr12 104180352 104180374 -40102115 + (T)n Simple_repeat Simple_repeat 1 22 0 244 157 20 0 chr12 104180415 104180466 -40102023 - MLT2F LTR ERVL 0 663 612 275 104 21 0 chr12 104180466 104180514 -40101975 + (TA)n Simple_repeat Simple_repeat 1 49 0 853 248 39 68 chr12 104180526 104180881 -40101608 - MLT2C1 LTR ERVL -40 357 13 376 327 7 13 chr12 104181279 104181429 -40101060 - L2 LINE L2 0 3313 3165 334 303 62 73 chr12 104181620 104181798 -40100691 - L2 LINE L2 -424 2890 2715 253 171 171 98 chr12 104181899 104182022 -40100467 - MER117 DNA MER1_type -47 150 19 579 165 134 6 chr12 104182085 104182249 -40100240 - MER53 DNA DNA -2 187 3 24 0 0 0 chr12 104183648 104183672 -40098817 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr12 104183735 104183770 -40098719 + AT_rich Low_complexity Low_complexity 1 35 0 237 196 0 0 chr12 104183927 104183978 -40098511 + (TG)n Simple_repeat Simple_repeat 2 52 0 289 224 26 40 chr12 104184207 104184283 -40098206 - L2 LINE L2 0 3272 3198 218 286 93 22 chr12 104185652 104185749 -40096740 + MIR SINE MIR 49 153 -55 507 192 102 18 chr12 104186816 104186983 -40095506 + MIR3 SINE MIR 13 193 -15 488 248 258 10 chr12 104188121 104188319 -40094170 + MIR SINE MIR 16 262 0 539 221 0 26 chr12 104188373 104188486 -40094003 - MER5A DNA MER1_type -4 185 76 650 241 19 50 chr12 104188560 104188779 -40093710 - MIR SINE MIR -5 257 47 309 315 45 55 chr12 104188942 104189142 -40093347 + MIR SINE MIR 22 219 -43 371 281 70 9 chr12 104189860 104189974 -40092515 - MER5B DNA MER1_type -57 121 1 370 317 90 14 chr12 104189974 104190119 -40092370 - MIR3 SINE MIR -48 160 5 261 284 0 14 chr12 104190615 104190689 -40091800 - MIR SINE MIR -7 255 183 235 224 0 0 chr12 104191267 104191316 -40091173 + (CA)n Simple_repeat Simple_repeat 2 50 0 534 249 57 44 chr12 104191400 104191629 -40090860 - Charlie8 DNA MER1_type -2152 265 34 719 320 45 8 chr12 104191750 104191994 -40090495 + MIR SINE MIR 6 258 -4 743 257 75 0 chr12 104192024 104192238 -40090251 + MIR SINE MIR 6 235 -27 254 95 24 0 chr12 104192268 104192310 -40090179 - MADE1 DNA Mariner 0 80 38 997 185 60 0 chr12 104192400 104192584 -40089905 + MER58A DNA MER1_type 30 224 0 304 350 10 0 chr12 104192679 104192776 -40089713 - L3 LINE CR1 -3 1574 1477 361 251 46 86 chr12 104192867 104193112 -40089377 - MLT1H LTR MaLR -242 307 42 641 304 45 9 chr12 104193346 104193570 -40088919 - MIR SINE MIR -2 260 29 2318 107 7 0 chr12 104193834 104194143 -40088346 - AluSx SINE Alu -1 311 1 667 188 53 18 chr12 104194170 104194340 -40088149 + LTR41 LTR ERVL 1 176 -597 437 236 0 41 chr12 104194754 104194877 -40087612 + LTR41 LTR ERVL 650 767 -6 874 195 170 14 chr12 104195103 104195380 -40087109 - MER5C DNA MER1_type -3 321 2 295 302 47 23 chr12 104196250 104196379 -40086110 - MIR SINE MIR -111 151 20 311 333 95 16 chr12 104197083 104197209 -40085280 - MIR3 SINE MIR -66 142 7 183 325 0 39 chr12 104197865 104197942 -40084547 - MIR SINE MIR -100 162 89 351 262 43 43 chr12 104198538 104198679 -40083810 - MIR SINE MIR -78 184 44 239 238 129 99 chr12 104198766 104198968 -40083521 + L2 LINE L2 3065 3272 0 1951 114 64 0 chr12 104199309 104199589 -40082900 - THE1A LTR MaLR 0 355 58 4402 67 0 2 chr12 104199589 104200144 -40082345 - THE1A-int LTR MaLR -1026 554 1 2574 96 8 36 chr12 104200144 104200277 -40082212 - THE1A LTR MaLR 0 355 220 2059 137 0 10 chr12 104200277 104200590 -40081899 - AluSx SINE Alu -2 310 1 2574 96 8 36 chr12 104200590 104200821 -40081668 - THE1A LTR MaLR -135 220 1 909 288 4 8 chr12 104201364 104201600 -40080889 - MIR SINE MIR -4 258 24 184 289 36 36 chr12 104201964 104202047 -40080442 - L2 LINE L2 0 3272 3190 292 236 132 57 chr12 104202341 104202447 -40080042 - L2 LINE L2 0 3313 3200 406 274 143 12 chr12 104202462 104202651 -40079838 + MER20B DNA MER1_type 7 219 0 345 294 20 0 chr12 104202681 104202783 -40079706 + (CATATA)n Simple_repeat Simple_repeat 4 107 0 22 0 0 0 chr12 104203000 104203022 -40079467 + AT_rich Low_complexity Low_complexity 1 22 0 382 266 71 127 chr12 104203172 104203582 -40078907 - L2 LINE L2 -466 2848 2462 261 192 269 0 chr12 104203602 104203706 -40078783 - MIR SINE MIR -33 229 98 441 310 33 54 chr12 104203804 104203890 -40078599 - HERV16 LTR ERVL -956 4808 4722 2013 176 75 61 chr12 104203890 104204384 -40078105 - MLT1D LTR MaLR 0 505 5 441 310 33 54 chr12 104204384 104204539 -40077950 - HERV16 LTR ERVL -1042 4722 4572 1040 322 54 62 chr12 104204630 104205289 -40077200 - HERV16 LTR ERVL -1708 3946 3292 2410 131 25 8 chr12 104205289 104205647 -40076842 + THE1B LTR MaLR 1 364 0 1040 322 54 62 chr12 104205647 104205745 -40076744 - HERV16 LTR ERVL -2362 3292 3195 1455 257 91 62 chr12 104205823 104206372 -40076117 - MER77 LTR ERV1 0 605 41 1047 342 81 16 chr12 104206505 104206952 -40075537 - HERV16 LTR ERVL -1937 3059 2584 1214 299 68 30 chr12 104206953 104207515 -40074974 - HERV16 LTR ERVL -4413 583 1 857 326 39 24 chr12 104207521 104207935 -40074554 - LTR16A LTR ERVL -6 444 25 22 35 0 0 chr12 104208156 104208185 -40074304 + AT_rich Low_complexity Low_complexity 1 29 0 279 323 42 21 chr12 104208232 104208328 -40074161 - MIR SINE MIR -145 117 20 251 317 77 0 chr12 104208678 104208782 -40073707 + L1MC/D LINE L1 5060 5171 -975 698 303 86 32 chr12 104208853 104209226 -40073263 + L1MC/D LINE L1 5258 5650 -512 2123 166 29 32 chr12 104209676 104210233 -40072256 - MLT2A2 LTR ERVL -2 552 1 180 132 53 26 chr12 104210348 104210386 -40072103 - MIR SINE MIR -62 146 108 27 0 0 0 chr12 104210560 104210587 -40071902 + AT_rich Low_complexity Low_complexity 1 27 0 1067 182 107 44 chr12 104211206 104211431 -40071058 - MER8 DNA MER2_type 0 239 1 231 323 60 30 chr12 104212888 104213021 -40069468 + L2 LINE L2 3128 3264 -8 887 187 18 93 chr12 104213090 104213225 -40069264 + MER58A DNA MER1_type 4 117 -2303 2410 126 0 37 chr12 104213225 104213575 -40068914 - MER1B DNA MER1_type 0 337 1 887 187 18 93 chr12 104213575 104213664 -40068825 + MER58A DNA MER1_type 117 211 -13 823 295 80 57 chr12 104213850 104214372 -40068117 - L2 LINE L2 0 3272 2723 2156 113 3 0 chr12 104217988 104218315 -40064174 + AluSx SINE Alu 1 328 0 879 231 5 60 chr12 104218514 104218713 -40063776 + MER5A DNA MER1_type 2 189 0 1694 144 42 4 chr12 104219081 104219345 -40063144 - AluJo SINE Alu -38 274 1 29 28 0 0 chr12 104219962 104219998 -40062491 + AT_rich Low_complexity Low_complexity 1 36 0 417 297 58 13 chr12 104220368 104220523 -40061966 + MIR SINE MIR 1 162 -100 981 225 64 97 chr12 104220523 104220745 -40061744 + LTR37B LTR ERV1 1 229 -239 2208 155 138 59 chr12 104220745 104221216 -40061273 + LTR54 LTR ERV1 1 508 -2 981 225 64 97 chr12 104221216 104221477 -40061012 + LTR37B LTR ERV1 229 468 0 214 256 26 39 chr12 104221479 104221557 -40060932 + MIR SINE MIR 159 235 -27 278 160 20 0 chr12 104221655 104221705 -40060784 + MER34 LTR ERV1 1 51 -491 1176 200 42 94 chr12 104221756 104221869 -40060620 + MER39 LTR ERV1 324 441 -266 1477 139 146 11 chr12 104221869 104222136 -40060353 + AluSg1 SINE Alu 3 305 -4 1176 200 42 94 chr12 104222136 104222395 -40060094 + MER39 LTR ERV1 441 676 -31 2181 163 12 53 chr12 104222395 104222813 -40059676 - MER57A LTR ERV1 0 403 3 1176 200 42 94 chr12 104222813 104222844 -40059645 + MER39 LTR ERV1 676 707 0 2215 215 104 63 chr12 104224326 104225020 -40057469 - MER72 LTR ERV1 0 722 1 549 288 137 10 chr12 104225419 104225624 -40056865 + MIR SINE MIR 29 259 -3 488 16 16 0 chr12 104225712 104225773 -40056716 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 1979 161 143 40 chr12 104225821 104226318 -40056171 - LTR10A LTR ERV1 -61 548 1 1433 232 97 37 chr12 104226555 104227035 -40055454 - MER39 LTR ERV1 -42 665 1 564 311 61 5 chr12 104227035 104227247 -40055242 - MIR SINE MIR -26 236 13 264 305 48 19 chr12 104227425 104227530 -40054959 + MIR SINE MIR 13 120 -142 1089 205 83 67 chr12 104227536 104227990 -40054499 + MER39 LTR ERV1 1 645 -62 259 255 47 57 chr12 104228054 104228160 -40054329 + MIR SINE MIR 107 211 -51 22 0 0 0 chr12 104228396 104228418 -40054071 + AT_rich Low_complexity Low_complexity 1 22 0 188 372 42 31 chr12 104228447 104228638 -40053851 + MIR SINE MIR 20 212 -50 1930 226 62 17 chr12 104229693 104230161 -40052328 + MLT1H LTR MaLR 1 489 -60 315 0 0 0 chr12 104230881 104230916 -40051573 + (A)n Simple_repeat Simple_repeat 1 35 0 378 42 0 0 chr12 104230997 104231045 -40051444 + (TG)n Simple_repeat Simple_repeat 1 48 0 2359 79 3 29 chr12 104231606 104231921 -40050568 - AluSx SINE Alu -5 307 1 243 0 0 0 chr12 104231964 104231991 -40050498 + (A)n Simple_repeat Simple_repeat 1 27 0 543 227 78 0 chr12 104233441 104233582 -40048907 - MER39 LTR ERV1 -4 703 552 1054 232 96 52 chr12 104233800 104234346 -40048143 - MER39 LTR ERV1 0 639 6 602 201 75 35 chr12 104236195 104236369 -40046120 + MER20 DNA MER1_type 39 219 0 322 247 209 19 chr12 104236378 104236445 -40046044 + MER112 DNA MER1_type 67 120 -140 2143 126 10 0 chr12 104236445 104236747 -40045742 - AluSg SINE Alu -5 305 1 322 247 209 19 chr12 104236747 104236837 -40045652 + MER112 DNA MER1_type 120 254 -6 413 350 16 0 chr12 104237083 104237206 -40045283 + L2 LINE L2 3139 3263 -9 242 36 0 0 chr12 104338683 104338711 -39943778 + (T)n Simple_repeat Simple_repeat 1 28 0 779 249 67 22 chr12 104341497 104341722 -39940767 + MIR SINE MIR 28 262 0 207 333 0 15 chr12 104341722 104341788 -39940701 + C-rich Low_complexity Low_complexity 4 68 0 24 0 0 0 chr12 104342060 104342084 -39940405 + AT_rich Low_complexity Low_complexity 1 24 0 211 225 113 0 chr12 104342515 104342586 -39939903 + L2 LINE L2 3235 3313 0 1099 276 130 23 chr12 104344671 104345166 -39937323 + L2 LINE L2 2773 3308 -5 572 285 37 21 chr12 104345269 104345511 -39936978 - L1ME LINE L1 -350 5771 5526 215 304 29 0 chr12 104345692 104345761 -39936728 - MIR3 SINE MIR -18 190 120 181 352 0 29 chr12 104347286 104347391 -39935098 - MIR SINE MIR -56 206 105 344 143 18 0 chr12 104347473 104347529 -39934960 + LTR50 LTR ERVL 1 57 -738 226 297 14 0 chr12 104348102 104348176 -39934313 + MIR SINE MIR 60 134 -128 247 343 72 64 chr12 104348512 104348748 -39933741 - L2 LINE L2 -18 3254 3017 297 266 190 51 chr12 104349230 104349388 -39933101 + MIR SINE MIR 83 262 0 1232 319 131 43 chr12 104349423 104350474 -39932015 + L2 LINE L2 1818 2961 -353 434 278 48 0 chr12 104350646 104350772 -39931717 + L2 LINE L2 3179 3310 -3 391 348 94 47 chr12 104351931 104352250 -39930239 - L2 LINE L2 -12 3260 2927 424 350 62 38 chr12 104352327 104352727 -39929762 - L2 LINE L2 -502 2812 2403 261 282 70 14 chr12 104352954 104353025 -39929464 + L2 LINE L2 3112 3186 -86 180 225 50 0 chr12 104353074 104353114 -39929375 - MIR SINE MIR -9 253 212 * 276 241 72 12 chr12 104353095 104353178 -39929311 + L2 LINE L2 3180 3267 -5 340 294 50 44 chr12 104353477 104353637 -39928852 + MIR SINE MIR 31 191 -71 289 273 109 0 chr12 104353955 104354065 -39928424 - MER5B DNA MER1_type -54 124 3 1299 172 21 51 chr12 104354340 104354452 -39928037 - MER33 DNA MER1_type -2266 319 205 2225 101 7 0 chr12 104354452 104354748 -39927741 - AluSx SINE Alu -14 298 1 1299 172 21 51 chr12 104354748 104354972 -39927517 - MER33 DNA MER1_type -2380 205 1 508 32 11 160 chr12 104355052 104355146 -39927343 - MADE1 DNA Mariner 0 80 1 352 375 13 18 chr12 104355664 104355888 -39926601 + L3 LINE CR1 1219 1441 -136 291 253 11 23 chr12 104356480 104356567 -39925922 + CT-rich Low_complexity Low_complexity 2 87 0 188 122 24 0 chr12 104356721 104356762 -39925727 + T-rich Low_complexity Low_complexity 1 42 0 346 268 118 31 chr12 104356853 104356980 -39925509 + MIR SINE MIR 13 150 -112 904 295 76 39 chr12 104357005 104357508 -39924981 - L2 LINE L2 -57 3256 2726 423 294 49 49 chr12 104357511 104357695 -39924794 - L2 LINE L2 -860 2454 2271 474 253 45 58 chr12 104357704 104357858 -39924631 - L2 LINE L2 -1345 1969 1818 270 265 111 26 chr12 104357860 104357977 -39924512 + L1ME LINE L1 57 183 -5936 31037 116 14 62 chr12 104358151 104362196 -39920293 + L1PA8 LINE L1 13 3618 -2554 1515 152 109 4 chr12 104362196 104362495 -39919994 + AluSx SINE Alu 1 326 0 31037 116 14 62 chr12 104362495 104364931 -39917558 + L1PA8 LINE L1 3618 6171 -1 979 196 25 0 chr12 104365163 104365362 -39917127 + MER3 DNA MER1_type 5 208 -1 24 32 0 0 chr12 104365395 104365426 -39917063 + AT_rich Low_complexity Low_complexity 1 31 0 658 317 67 20 chr12 104365575 104366182 -39916307 + L1ME LINE L1 916 1576 -4734 532 113 0 0 chr12 104366948 104367028 -39915461 - MADE1 DNA Mariner 0 80 1 228 89 222 0 chr12 104367229 104367274 -39915215 - MIR3 SINE MIR -49 159 105 216 425 50 6 chr12 104368232 104368411 -39914078 - MIR SINE MIR -52 210 24 188 35 35 0 chr12 104368675 104368704 -39913785 + (TAA)n Simple_repeat Simple_repeat 2 31 0 241 374 30 0 chr12 104368923 104369022 -39913467 + L2 LINE L2 2550 2651 -663 279 283 90 68 chr12 104369472 104369885 -39912604 + L1MEd LINE L1 816 1237 -4882 651 248 62 38 chr12 104370423 104370633 -39911856 - MER58C DNA MER1_type 0 215 1 378 91 0 0 chr12 104371484 104371539 -39910950 + (TG)n Simple_repeat Simple_repeat 1 55 0 186 133 0 0 chr12 104373493 104373523 -39908966 + (A)n Simple_repeat Simple_repeat 1 30 0 394 311 0 50 chr12 104374042 104374203 -39908286 - MIR3 SINE MIR -25 183 31 190 372 13 0 chr12 104374325 104374403 -39908086 - L2 LINE L2 -556 2758 2680 335 280 161 0 chr12 104374448 104374566 -39907923 + MIR3 SINE MIR 65 201 -7 2097 104 13 7 chr12 104375660 104375967 -39906522 - AluSg SINE Alu -1 309 1 207 239 22 0 chr12 104376194 104376240 -39906249 - L2 LINE L2 -10 3303 3257 699 338 66 11 chr12 104377002 104377079 -39905410 - HAL1 LINE L1 -650 1857 1786 2092 117 0 46 chr12 104377079 104377404 -39905085 - AluY SINE Alu 0 311 2 699 338 66 11 chr12 104377404 104377870 -39904619 - HAL1 LINE L1 -721 1786 1284 565 285 40 20 chr12 104377887 104378136 -39904353 - L1ME3A LINE L1 -5 6165 5912 189 0 0 0 chr12 104378139 104378160 -39904329 + (TTG)n Simple_repeat Simple_repeat 2 22 0 236 259 132 19 chr12 104378191 104378403 -39904086 - HAL1 LINE L1 -1257 1250 1015 371 294 149 17 chr12 104378433 104378803 -39903686 - MLT1J2 LTR MaLR -41 470 1 232 196 22 54 chr12 104378866 104378958 -39903531 + CT-rich Low_complexity Low_complexity 3 91 0 867 310 79 7 chr12 104379357 104379647 -39902842 - MLT1I LTR MaLR 0 409 99 225 288 50 0 chr12 104380059 104380139 -39902350 - HAL1 LINE L1 -2372 135 52 261 0 0 0 chr12 104380218 104380247 -39902242 + (CA)n Simple_repeat Simple_repeat 1 29 0 7567 26 3 2 chr12 104380270 104381615 -39900874 - L1PA4 LINE L1 -3 6152 4807 2182 34 0 4 chr12 104381615 104381880 -39900609 + L1P1 LINE L1 5366 5629 -526 36 40 0 0 chr12 104383405 104383455 -39899034 + AT_rich Low_complexity Low_complexity 1 50 0 560 214 76 46 chr12 104385491 104385729 -39896760 - MER112 DNA MER1_type -8 252 8 1465 129 99 0 chr12 104386251 104386514 -39895975 + L1MA6 LINE L1 6006 6294 -6 2515 65 3 0 chr12 104386699 104387007 -39895482 + AluY SINE Alu 1 309 -2 497 223 194 29 chr12 104387107 104387246 -39895243 + MER5A DNA MER1_type 28 189 0 3706 122 2 9 chr12 104388634 104389166 -39893323 + MER1A DNA MER1_type 1 528 -1 647 312 8 0 chr12 104389167 104389404 -39893085 - L1MC4a LINE L1 -1894 5914 5676 186 133 0 0 chr12 104389606 104389636 -39892853 + (TTA)n Simple_repeat Simple_repeat 1 30 0 184 350 0 50 chr12 104389642 104389722 -39892767 - MIR SINE MIR -186 76 1 253 277 81 33 chr12 104389760 104389835 -39892654 - MIR SINE MIR -12 250 180 180 0 0 0 chr12 104389835 104389855 -39892634 + (TTG)n Simple_repeat Simple_repeat 1 20 0 253 277 81 33 chr12 104389855 104389948 -39892541 - MIR SINE MIR -82 180 36 338 236 50 79 chr12 104390864 104391004 -39891485 - MIR SINE MIR 0 262 127 241 323 21 42 chr12 104391684 104391780 -39890709 - L2 LINE L2 0 3272 3179 393 250 0 31 chr12 104395135 104395231 -39887258 + L2 LINE L2 3180 3272 0 216 0 0 0 chr12 104395550 104395574 -39886915 + (T)n Simple_repeat Simple_repeat 1 24 0 258 173 0 39 chr12 104398345 104398397 -39884092 - L2 LINE L2 -1 3312 3263 249 329 13 0 chr12 104398442 104398518 -39883971 - MIR SINE MIR -78 130 54 23 54 0 0 chr12 104399127 104399164 -39883325 + AT_rich Low_complexity Low_complexity 1 37 0 474 336 52 17 chr12 104403452 104403684 -39878805 + MIR SINE MIR 23 262 0 320 138 0 12 chr12 104403813 104403893 -39878596 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 198 314 137 20 chr12 104404077 104404179 -39878310 - MIR SINE MIR -55 207 94 186 133 0 0 chr12 104404625 104404655 -39877834 + (A)n Simple_repeat Simple_repeat 1 30 0 357 287 160 6 chr12 104406210 104406391 -39876098 + L2 LINE L2 3086 3294 -19 489 244 126 0 chr12 104406535 104406662 -39875827 - MIR SINE MIR -8 254 112 192 77 0 0 chr12 104408111 104408137 -39874352 + (CACCAT)n Simple_repeat Simple_repeat 5 30 0 2181 141 0 0 chr12 104409205 104409510 -39872979 + AluSx SINE Alu 1 305 -7 6557 147 30 49 chr12 104409580 104411736 -39870753 - L1MA9 LINE L1 -22 6290 4169 1952 108 0 0 chr12 104413047 104413324 -39869165 + AluSp SINE Alu 33 309 0 182 343 177 11 chr12 104413808 104413983 -39868506 - MIR SINE MIR -39 223 20 24 0 0 0 chr12 104414072 104414096 -39868393 + AT_rich Low_complexity Low_complexity 1 24 0 185 326 43 0 chr12 104416368 104416414 -39866075 + L2 LINE L2 3142 3189 -83 397 308 67 38 chr12 104416609 104416846 -39865643 + MIR SINE MIR 20 262 0 2282 116 3 0 chr12 104416849 104417159 -39865330 - AluSx SINE Alu -1 311 1 245 264 0 11 chr12 104417166 104417253 -39865236 + (TTA)n Simple_repeat Simple_repeat 3 88 0 21 0 0 0 chr12 104417701 104417722 -39864767 + AT_rich Low_complexity Low_complexity 1 21 0 234 341 37 0 chr12 104420792 104420874 -39861615 - MIR SINE MIR -70 192 108 314 310 10 0 chr12 104420953 104421053 -39861436 + CT-rich Low_complexity Low_complexity 2 102 0 279 0 0 0 chr12 104421994 104422025 -39860464 + (TC)n Simple_repeat Simple_repeat 2 32 0 204 40 0 0 chr12 104423066 104423091 -39859398 + (GAA)n Simple_repeat Simple_repeat 3 27 0 2120 104 20 0 chr12 104423259 104423557 -39858932 + AluSp SINE Alu 1 304 -9 4138 38 0 0 chr12 104423660 104424157 -39858332 + L1PA3 LINE L1 5658 6154 -1 1936 129 7 18 chr12 104424276 104424591 -39857898 - AluJb SINE Alu 0 312 1 312 333 84 18 chr12 104424601 104424826 -39857663 - L1M4 LINE L1 -1743 4403 4164 240 295 32 0 chr12 104425045 104425140 -39857349 - L1ME LINE L1 -230 5891 5794 422 272 37 29 chr12 104425249 104425385 -39857104 - MIR SINE MIR -15 247 111 220 164 0 104 chr12 104425485 104425552 -39856937 - MIR SINE MIR -35 227 168 1170 142 20 25 chr12 104425552 104425749 -39856740 + AluJo SINE Alu 63 258 -54 584 276 58 38 chr12 104426226 104426519 -39855970 + LTR16A LTR ERVL 143 441 -9 2266 97 3 13 chr12 104426535 104426835 -39855654 + AluSq SINE Alu 2 298 -15 2062 102 0 4 chr12 104427197 104427471 -39855018 + AluSg SINE Alu 1 273 -37 197 293 226 8 chr12 104429778 104429911 -39852578 + L2 LINE L2 1606 1767 -1547 701 234 7 0 chr12 104429917 104430058 -39852431 - MER20 DNA MER1_type 0 219 78 16777 28 2 0 chr12 104430289 104432482 -39850007 + L1P1 LINE L1 3393 5588 -567 2328 97 0 3 chr12 104433366 104433677 -39848812 + AluSg SINE Alu 1 310 0 15031 70 8 3 chr12 104434469 104436634 -39845855 - L1ME LINE L1 -494 5672 3491 1482 186 61 3 chr12 104436771 104436885 -39845604 + AluJo SINE Alu 1 107 -205 2110 131 0 0 chr12 104436885 104437182 -39845307 + AluSq SINE Alu 12 308 -5 1482 186 61 3 chr12 104437182 104437362 -39845127 + AluJo SINE Alu 107 312 0 181 372 20 20 chr12 104437637 104437785 -39844704 - MIR SINE MIR -2 260 113 488 159 45 53 chr12 104438125 104438257 -39844232 - L1MC4 LINE L1 -398 7644 7514 261 139 0 0 chr12 104438260 104438303 -39844186 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 521 224 0 0 chr12 104438318 104438416 -39844073 - FLAM_A SINE Alu -44 98 1 618 248 58 27 chr12 104438459 104438754 -39843735 + L1ME4a LINE L1 5712 6015 -106 22 0 0 0 chr12 104440768 104440790 -39841699 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 104440803 104440826 -39841663 + AT_rich Low_complexity Low_complexity 1 23 0 2902 139 25 3 chr12 104441082 104441881 -39840608 - L1P4 LINE L1 -546 5615 4798 2224 86 0 0 chr12 104441881 104442178 -39840311 + L1PA13 LINE L1 5862 6162 -1 3480 108 29 8 chr12 104443232 104443748 -39838741 - L1PA15 LINE L1 -12 6153 5627 1420 152 15 4 chr12 104446923 104447186 -39835303 - L1MD3 LINE L1 0 7995 7730 220 343 96 0 chr12 104447221 104447294 -39835195 + L2 LINE L2 3229 3308 -5 25 73 0 0 chr12 104448475 104448516 -39833973 + AT_rich Low_complexity Low_complexity 1 41 0 30 69 0 0 chr12 104448730 104448788 -39833701 + AT_rich Low_complexity Low_complexity 1 58 0 1596 194 7 29 chr12 104450269 104450579 -39831910 - AluJb SINE Alu -9 303 1 267 258 237 21 chr12 104450608 104450701 -39831788 - MIR SINE MIR -121 141 29 1825 117 82 49 chr12 104450918 104451285 -39831204 - MLT1B LTR MaLR -11 379 1 280 57 0 0 chr12 104451604 104451639 -39830850 - U2 snRNA snRNA -153 35 1 1409 169 51 30 chr12 104451708 104452004 -39830485 - AluJo SINE Alu -6 306 5 518 257 23 37 chr12 104452236 104452450 -39830039 - L1MC4 LINE L1 0 8042 7832 2222 121 0 3 chr12 104452551 104452858 -39829631 - AluSc SINE Alu -3 306 1 5465 88 16 5 chr12 104453773 104454694 -39827795 + L1PA7 LINE L1 5169 6101 -53 389 300 25 22 chr12 104454892 104455148 -39827341 - L1ME LINE L1 -629 5541 5282 1888 167 0 0 chr12 104455148 104455435 -39827054 - AluJo SINE Alu -16 296 10 389 300 25 22 chr12 104455435 104455455 -39827034 - L1ME LINE L1 -888 5282 5264 442 317 81 30 chr12 104455500 104455771 -39826718 - L1ME LINE L1 -979 5167 4883 37241 44 2 1 chr12 104456024 104460823 -39821666 - L1P LINE L1 -1343 4803 1 429 256 62 68 chr12 104460829 104461181 -39821308 - HAL1b LINE L1 -352 996 647 2333 251 44 86 chr12 104461320 104462525 -39819964 + L1ME1 LINE L1 38 1191 -5205 813 253 5 9 chr12 104462529 104462750 -39819739 + L1ME1 LINE L1 1813 2032 -4364 4803 231 79 24 chr12 104462764 104463660 -39818829 + L1ME1 LINE L1 3527 4372 -1863 843 144 0 15 chr12 104463660 104463792 -39818697 + FLAM_C SINE Alu 2 131 -2 4803 231 79 24 chr12 104463792 104465412 -39817077 + L1ME1 LINE L1 4372 6191 -44 950 107 17 17 chr12 104465992 104466007 -39816482 + (TTTC)n Simple_repeat Simple_repeat 1 193 0 950 107 17 17 chr12 104466007 104466185 -39816304 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 194 333 48 0 chr12 104466327 104466390 -39816099 + L3 LINE CR1 910 975 -602 224 286 13 39 chr12 104466486 104466563 -39815926 - L2 LINE L2 -5 3267 3193 1033 294 69 62 chr12 104467512 104468080 -39814409 - MLT1K LTR MaLR -16 572 1 909 258 37 19 chr12 104469544 104469950 -39812539 + MLT1H LTR MaLR 62 547 -2 260 298 137 25 chr12 104470276 104470437 -39812052 + L2 LINE L2 2872 3050 -222 465 321 25 6 chr12 104470609 104470768 -39811721 - MIR SINE MIR -19 243 82 1744 158 10 29 chr12 104471061 104471371 -39811118 + AluJo SINE Alu 5 308 -4 279 0 0 0 chr12 104472535 104472566 -39809923 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 182 283 0 0 chr12 104472811 104472864 -39809625 + L2 LINE L2 3261 3313 0 703 246 27 16 chr12 104472881 104473064 -39809425 + MIR SINE MIR 3 187 -75 279 261 0 0 chr12 104473204 104473292 -39809197 + L1MC4 LINE L1 6614 6701 -1341 303 326 0 0 chr12 104473295 104473384 -39809105 + L1MC4 LINE L1 6615 6703 -1339 192 269 45 15 chr12 104473410 104473477 -39809012 - MIR SINE MIR -110 152 84 2048 147 0 0 chr12 104474083 104474383 -39808106 - AluSx SINE Alu -12 300 1 467 332 18 55 chr12 104474834 104475051 -39807438 - MIR SINE MIR -38 224 16 287 280 32 32 chr12 104475762 104475855 -39806634 + MIR SINE MIR 34 126 -82 540 298 42 0 chr12 104475907 104476075 -39806414 - MIR SINE MIR -15 247 73 231 310 60 130 chr12 104476392 104476576 -39805913 + L2 LINE L2 3102 3272 0 749 289 60 51 chr12 104476819 104477169 -39805320 + MLT1K LTR MaLR 78 430 -158 2300 57 0 0 chr12 104477178 104477458 -39805031 - AluY SINE Alu -5 306 27 514 355 43 17 chr12 104477908 104478139 -39804350 + MIR SINE MIR 26 262 0 242 179 18 0 chr12 104478172 104478228 -39804261 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2015 152 0 0 chr12 104478775 104479071 -39803418 + AluSx SINE Alu 1 296 -16 309 51 0 0 chr12 104479840 104479879 -39802610 + (TG)n Simple_repeat Simple_repeat 2 40 0 255 31 0 0 chr12 104479881 104479913 -39802576 + (GA)n Simple_repeat Simple_repeat 1 32 0 769 190 0 0 chr12 104480240 104480361 -39802128 - FLAM_A SINE Alu -12 121 1 210 171 43 0 chr12 104482167 104482237 -39800252 + (TA)n Simple_repeat Simple_repeat 1 73 0 270 336 41 8 chr12 104482643 104482765 -39799724 + MIR3 SINE MIR 71 196 -12 376 284 18 9 chr12 104482944 104483053 -39799436 - MER5B DNA MER1_type -2 176 67 274 397 27 0 chr12 104483322 104483506 -39798983 - L2 LINE L2 -221 3051 2863 534 310 90 26 chr12 104483572 104483949 -39798540 + MLT1J LTR MaLR 62 462 -49 251 309 32 32 chr12 104484916 104485039 -39797450 + L2 LINE L2 2554 2676 -638 279 122 0 0 chr12 104485524 104485573 -39796916 + (CA)n Simple_repeat Simple_repeat 2 50 0 310 298 58 25 chr12 104485943 104486064 -39796425 + MIR SINE MIR 21 145 -63 203 250 0 0 chr12 104486695 104486743 -39795746 + L2 LINE L2 2985 3032 -240 855 183 0 0 chr12 104486836 104487016 -39795473 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 681 199 0 0 chr12 104487027 104487183 -39795306 + (TCCA)n Simple_repeat Simple_repeat 2 157 0 386 237 13 0 chr12 104487183 104487259 -39795230 - L2 LINE L2 0 3313 3237 354 283 94 13 chr12 104487354 104487513 -39794976 + MIR SINE MIR 90 261 -1 433 272 144 10 chr12 104488357 104488559 -39793930 + MIR SINE MIR 21 249 -13 195 162 0 0 chr12 104488868 104488905 -39793584 + CT-rich Low_complexity Low_complexity 2 38 0 961 309 114 8 chr12 104489257 104489758 -39792731 - MLT1K LTR MaLR -33 555 2 532 316 35 41 chr12 104489763 104489934 -39792555 - MIR SINE MIR -89 173 4 22 0 0 0 chr12 104490165 104490187 -39792302 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr12 104490445 104490469 -39792020 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 239 328 24 56 chr12 104490927 104491052 -39791437 + L2 LINE L2 3139 3259 -13 288 53 0 0 chr12 104491052 104491090 -39791399 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1681 133 0 54 chr12 104492387 104492665 -39789824 - AluSg SINE Alu -2 308 46 2885 151 50 10 chr12 104492907 104493483 -39789006 - L1MA8 LINE L1 -3 6288 5690 315 246 0 0 chr12 104493656 104493717 -39788772 + L2 LINE L2 3209 3269 -3 482 310 89 0 chr12 104493935 104494129 -39788360 + MIR SINE MIR 37 249 -13 224 304 0 0 chr12 104494365 104494421 -39788068 - L3b LINE CR1 -284 1299 1244 186 43 0 0 chr12 104494605 104494628 -39787861 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 27 0 0 0 chr12 104496185 104496212 -39786277 + AT_rich Low_complexity Low_complexity 1 27 0 1501 261 114 24 chr12 104497092 104497635 -39784854 + MLT1E LTR MaLR 1 592 -1 767 228 109 5 chr12 104498235 104498428 -39784061 - MER58A DNA MER1_type -11 213 1 298 238 16 168 chr12 104499337 104499522 -39782967 + MIR SINE MIR 50 206 -56 254 344 65 0 chr12 104499566 104499659 -39782830 - L2 LINE L2 -6 3266 3168 406 232 95 71 chr12 104499718 104499886 -39782603 - MIR SINE MIR -41 221 50 401 240 77 19 chr12 104500126 104500230 -39782259 - MIR SINE MIR -151 111 2 306 274 20 20 chr12 104500434 104500536 -39781953 - MER103 DNA DNA -43 123 22 3489 151 8 0 chr12 104500610 104501132 -39781357 - MER1A DNA MER1_type -1 526 1 1958 208 31 10 chr12 104502107 104502593 -39779896 - Charlie1a DNA MER1_type -2 1453 958 40291 38 22 3 chr12 104502593 104508630 -39773859 - L1PA2 LINE L1 -1 6154 3 3364 186 41 110 chr12 104508631 104509665 -39772824 - Charlie1a DNA MER1_type -483 972 11 250 291 78 73 chr12 104510628 104510807 -39771682 - MIR SINE MIR -49 213 34 357 276 28 94 chr12 104511392 104511711 -39770778 + HAL1 LINE L1 58 355 -2152 894 216 8 72 chr12 104511728 104511758 -39770731 - MER58A DNA MER1_type -2199 221 191 1806 163 70 14 chr12 104511758 104512102 -39770387 - MLT1A1 LTR MaLR 0 365 3 894 216 8 72 chr12 104512102 104512137 -39770352 - MER58A DNA MER1_type -2229 191 155 2452 131 5 26 chr12 104512137 104512520 -39769969 - THE1C LTR MaLR 0 375 1 10726 105 31 3 chr12 104512520 104514057 -39768432 - THE1C-int LTR MaLR 0 1580 1 2415 127 11 3 chr12 104514057 104514418 -39768071 - THE1B LTR MaLR 0 364 1 894 216 8 72 chr12 104514418 104514585 -39767904 - MER58A DNA MER1_type -2262 158 1 258 192 14 27 chr12 104514827 104514900 -39767589 + HAL1 LINE L1 2331 2402 -105 2344 124 5 3 chr12 104516042 104516414 -39766075 - L1PA13 LINE L1 0 6163 5791 1375 173 47 123 chr12 104516519 104516965 -39765524 + MLT2D LTR ERVL 1 412 -2 296 345 21 35 chr12 104517141 104517283 -39765206 + MIR SINE MIR 13 152 -110 213 296 56 0 chr12 104517356 104517427 -39765062 - MIR SINE MIR -95 113 39 30 45 0 0 chr12 104518237 104518281 -39764208 + AT_rich Low_complexity Low_complexity 1 44 0 183 239 0 0 chr12 104518373 104518419 -39764070 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 779 154 6 22 chr12 104518626 104518808 -39763681 + GA-rich Low_complexity Low_complexity 2 180 0 212 338 0 0 chr12 104518829 104518903 -39763586 + GA-rich Low_complexity Low_complexity 1 74 0 269 364 149 18 chr12 104518904 104519132 -39763357 - L2 LINE L2 -8 3264 3007 333 0 0 0 chr12 104519686 104519723 -39762766 + (TTG)n Simple_repeat Simple_repeat 1 37 0 787 246 16 69 chr12 104520086 104520391 -39762098 - L2 LINE L2 -6 3307 3019 1802 210 41 36 chr12 104520493 104521076 -39761413 - L1MB4 LINE L1 -2 6178 5492 1950 135 10 3 chr12 104521076 104521372 -39761117 - AluSc SINE Alu -11 298 1 1802 210 41 36 chr12 104521372 104521401 -39761088 - L1MB4 LINE L1 -688 5492 5465 243 167 0 0 chr12 104521401 104521443 -39761046 + AluSx SINE Alu 2 43 -260 2183 104 0 0 chr12 104521566 104521853 -39760636 + AluSx SINE Alu 23 309 -3 1095 148 46 1 chr12 104521855 104522100 -39760389 - L1MB4 LINE L1 -708 5472 5219 411 231 44 19 chr12 104522895 104523055 -39759434 - MER103 DNA DNA 0 166 3 229 245 10 20 chr12 104523349 104523447 -39759042 + (CATATA)n Simple_repeat Simple_repeat 4 100 0 2238 104 49 14 chr12 104523454 104523800 -39758689 - THE1B LTR MaLR 0 364 7 35852 82 8 17 chr12 104524197 104527063 -39755426 + L1PA6 LINE L1 11 2901 -3253 2236 108 3 3 chr12 104527063 104527370 -39755119 + AluY SINE Alu 1 307 -4 35852 82 8 17 chr12 104527370 104530706 -39751783 + L1PA6 LINE L1 2901 6154 0 1923 109 16 87 chr12 104530719 104531041 -39751448 + AluSq SINE Alu 3 301 -12 2027 127 7 7 chr12 104531044 104531335 -39751154 + AluSx SINE Alu 1 291 -21 405 342 15 10 chr12 104532465 104532661 -39749828 - MER117 DNA MER1_type 0 197 1 225 344 183 17 chr12 104533686 104533866 -39748623 + MIR SINE MIR 38 247 -15 2892 264 77 41 chr12 104533961 104537023 -39745466 + L1MEc LINE L1 17 3142 -3073 810 115 16 44 chr12 104537079 104537261 -39745228 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 294 29 0 0 chr12 104537285 104537320 -39745169 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 258 257 0 0 chr12 104537320 104537401 -39745088 + L1MEc LINE L1 1421 1492 -4892 308 288 98 35 chr12 104537474 104537702 -39744787 - MIR SINE MIR -16 246 1 829 292 21 8 chr12 104537743 104537979 -39744510 - MIR SINE MIR -22 240 2 205 171 0 0 chr12 104538320 104538355 -39744134 + T-rich Low_complexity Low_complexity 5 39 0 2030 77 0 0 chr12 104538847 104539107 -39743382 + AluY SINE Alu 44 303 -8 990 147 0 19 chr12 104539161 104539317 -39743172 + AluJo SINE Alu 22 174 -138 638 209 0 45 chr12 104539372 104539506 -39742983 + AluJo SINE Alu 173 300 -12 22 56 0 0 chr12 104540814 104540850 -39741639 + AT_rich Low_complexity Low_complexity 1 36 0 515 179 28 14 chr12 104541769 104541914 -39740575 + GA-rich Low_complexity Low_complexity 3 149 0 289 317 0 0 chr12 104542557 104542639 -39739850 + L2 LINE L2 2677 2758 -556 1269 183 4 23 chr12 104542659 104542916 -39739573 + MLT2B1 LTR ERVL 3 254 -266 33870 74 6 6 chr12 104542916 104549053 -39733436 - L1PA5 LINE L1 -1 6153 2 663 210 166 10 chr12 104549085 104549290 -39733199 + MLT2B1 LTR ERVL 284 520 0 356 299 68 122 chr12 104549343 104549444 -39733045 + L2 LINE L2 2827 2932 -340 627 209 51 98 chr12 104549444 104549679 -39732810 - MER58A DNA MER1_type 0 224 1 356 299 68 122 chr12 104549679 104549967 -39732522 + L2 LINE L2 2932 3190 -82 2305 97 3 3 chr12 104549967 104550265 -39732224 - AluSc SINE Alu -11 298 1 356 299 68 122 chr12 104550265 104550333 -39732156 + L2 LINE L2 3190 3260 -12 600 261 14 7 chr12 104550525 104550667 -39731822 - MER5B DNA MER1_type 0 178 36 1215 233 52 48 chr12 104550667 104551127 -39731362 - MLT1C LTR MaLR 0 467 6 186 71 0 0 chr12 104551468 104551496 -39730993 + (A)n Simple_repeat Simple_repeat 1 28 0 213 250 0 0 chr12 104552725 104552773 -39729716 + A-rich Low_complexity Low_complexity 1 48 0 2586 170 25 6 chr12 104553488 104553964 -39728525 + MER31A LTR ERV1 1 485 0 781 286 59 48 chr12 104554206 104554789 -39727700 - L2 LINE L2 -1 3312 2714 182 300 20 0 chr12 104554786 104554836 -39727653 + L2 LINE L2 2729 2779 -535 * 602 273 79 44 chr12 104555151 104555378 -39727111 - MIR SINE MIR -9 253 19 819 302 133 28 chr12 104555492 104555965 -39726524 + MLT1K LTR MaLR 66 588 0 1105 188 9 48 chr12 104556054 104556333 -39726156 + L1MC3 LINE L1 5580 5807 -377 244 0 56 0 chr12 104556333 104556369 -39726120 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 40016 41 21 2 chr12 104556369 104562386 -39720103 - L1PA2 LINE L1 -16 6139 3 15737 36 0 0 chr12 104562385 104564403 -39718086 - L1P LINE L1 -2806 3340 1323 * 973 9 0 0 chr12 104564403 104564510 -39717979 - U6 snRNA snRNA 0 107 1 338 279 32 85 chr12 104564609 104564856 -39717633 - MLT1J LTR MaLR 0 511 278 1204 250 173 2 chr12 104564903 104565303 -39717186 + MLT1H LTR MaLR 81 548 -1 736 219 0 95 chr12 104565836 104566046 -39716443 - AluJo SINE Alu -21 291 102 380 349 7 48 chr12 104566367 104566639 -39715850 + L3 LINE CR1 523 783 -794 400 383 23 33 chr12 104566839 104567053 -39715436 + L2 LINE L2 3060 3271 -1 7540 12 1 1 chr12 104567268 104568292 -39714197 + L1HS LINE L1 5132 6155 0 1761 198 0 0 chr12 104568334 104568642 -39713847 + AluJb SINE Alu 1 308 -4 982 235 27 0 chr12 104568827 104569048 -39713441 + Charlie1 DNA MER1_type 1 227 -2534 547 239 0 0 chr12 104569054 104569184 -39713305 + Charlie1 DNA MER1_type 2632 2761 0 430 322 161 14 chr12 104569188 104569399 -39713090 + MIR SINE MIR 21 262 0 320 275 46 21 chr12 104569947 104570085 -39712404 - MIR3 SINE MIR -4 204 63 425 290 43 36 chr12 104570094 104570232 -39712257 - MIR SINE MIR -75 187 49 480 280 73 0 chr12 104571612 104571762 -39710727 + MIR SINE MIR 46 206 -56 644 262 71 77 chr12 104571809 104572160 -39710329 - MLT1I LTR MaLR -6 403 55 300 351 30 15 chr12 104574042 104574176 -39708313 + L2 LINE L2 3137 3272 0 2585 172 51 24 chr12 104574334 104575248 -39707241 - L1MC3 LINE L1 -10 7775 6760 338 186 0 29 chr12 104575248 104575318 -39707171 + MLT1A1 LTR MaLR 1 68 -360 30 0 0 0 chr12 104575517 104575547 -39706942 + AT_rich Low_complexity Low_complexity 1 30 0 767 241 25 10 chr12 104575612 104575811 -39706678 + MLT1A1 LTR MaLR 164 365 0 4119 170 34 33 chr12 104575811 104575961 -39706528 - L1MC3 LINE L1 -1021 6764 6616 1834 184 7 0 chr12 104575961 104576266 -39706223 - AluJb SINE Alu -5 307 1 4119 170 34 33 chr12 104576266 104577035 -39705454 - L1MC3 LINE L1 -1169 6616 5844 8957 36 1 0 chr12 104577035 104578185 -39704304 + L1P LINE L1 1712 2862 -3284 183 42 0 0 chr12 104578898 104578922 -39703567 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 307 248 241 21 chr12 104580817 104580962 -39701527 + MIR SINE MIR 86 262 0 29 47 0 0 chr12 104582589 104582632 -39699857 + GC_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr12 104582665 104582702 -39699787 + GC_rich Low_complexity Low_complexity 1 37 0 232 208 8 176 chr12 104584029 104584154 -39698335 - MER46C DNA MER2_type -234 104 1 329 214 97 29 chr12 104584691 104584794 -39697695 - L2 LINE L2 -4 3309 3200 287 316 98 35 chr12 104584829 104585003 -39697486 + L2 LINE L2 3129 3313 0 386 333 62 74 chr12 104585081 104585600 -39696889 + L2 LINE L2 2563 3084 -188 303 204 118 104 chr12 104586284 104586495 -39695994 + L1ME4a LINE L1 5906 6119 -2 2094 113 7 0 chr12 104586565 104586858 -39695631 - AluSx SINE Alu -17 295 1 780 290 6 15 chr12 104587419 104587750 -39694739 - L1PA13 LINE L1 0 6163 5836 334 264 86 61 chr12 104588456 104588619 -39693870 - MIR SINE MIR -46 216 50 17110 35 4 7 chr12 104588678 104591513 -39690976 + L1PA3 LINE L1 3320 6152 -3 26 0 0 0 chr12 104592214 104592240 -39690249 + AT_rich Low_complexity Low_complexity 1 26 0 2063 116 0 17 chr12 104593267 104593585 -39688904 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 104593791 104593812 -39688677 + AT_rich Low_complexity Low_complexity 1 21 0 1733 183 0 43 chr12 104595874 104596196 -39686293 - AluJo SINE Alu -1 311 4 2237 266 72 33 chr12 104596238 104596972 -39685517 - MER21B LTR ERV1 -54 809 47 395 200 13 0 chr12 104596988 104597063 -39685426 - MER21B LTR ERV1 -776 87 12 2630 242 84 43 chr12 104597406 104598576 -39683913 + MER69B DNA AcHobo 2 1219 -7 201 74 0 0 chr12 104598596 104598623 -39683866 + (TC)n Simple_repeat Simple_repeat 1 27 0 378 211 22 17 chr12 104598668 104598907 -39683582 + (TA)n Simple_repeat Simple_repeat 1 240 0 1595 41 31 0 chr12 104599805 104600001 -39682488 - L1PA4 LINE L1 -2 6153 5952 604 355 57 0 chr12 104602090 104602335 -39680154 + MIR SINE MIR 1 259 -3 501 163 0 0 chr12 104602359 104602445 -39680044 - MER117 DNA MER1_type -105 92 7 599 344 170 15 chr12 104602535 104602701 -39679788 - L3 LINE CR1 -5 1572 1433 1488 187 36 65 chr12 104602701 104603086 -39679403 - MLT1A2 LTR MaLR 0 374 1 599 344 170 15 chr12 104603086 104603437 -39679052 - L3 LINE CR1 -144 1433 975 445 250 58 0 chr12 104603864 104603984 -39678505 - MIR SINE MIR -3 259 133 2032 170 23 18 chr12 104604162 104604550 -39677939 - MLT1B LTR MaLR 0 390 1 668 307 53 33 chr12 104604579 104604823 -39677666 + MIR SINE MIR 3 251 -11 2587 184 67 32 chr12 104604869 104605338 -39677151 - L1MA9 LINE L1 -38 6274 5776 270 0 0 0 chr12 104605338 104605368 -39677121 + (TG)n Simple_repeat Simple_repeat 2 31 0 2587 184 67 32 chr12 104605368 104605527 -39676962 - L1MA9 LINE L1 -536 5776 5624 2261 178 24 25 chr12 104605528 104606204 -39676285 + L1M2 LINE L1 4806 5493 -819 2019 109 7 11 chr12 104606204 104606519 -39675970 + AluSx SINE Alu 1 314 0 2261 178 24 25 chr12 104606519 104606676 -39675813 + L1M2 LINE L1 5493 5649 -663 2235 94 0 19 chr12 104606793 104607102 -39675387 - AluSq SINE Alu -10 303 1 1450 242 36 108 chr12 104607180 104607817 -39674672 + MLT1E LTR MaLR 3 593 0 230 374 48 0 chr12 104608762 104608845 -39673644 - L2 LINE L2 -1 3271 3185 264 244 11 33 chr12 104608849 104608939 -39673550 - MLT1I LTR MaLR -4 405 318 325 304 127 52 chr12 104609510 104610079 -39672410 - L2 LINE L2 -7 3265 2719 392 368 56 45 chr12 104610342 104610630 -39671859 - L2 LINE L2 -1 3271 2981 327 234 83 55 chr12 104610665 104610810 -39671679 - MLT1K LTR MaLR -31 557 409 3653 98 38 57 chr12 104610837 104611449 -39671040 + MER4A LTR ERV1 1 600 0 1117 222 43 92 chr12 104611469 104611960 -39670529 - MLT1C LTR MaLR 0 467 1 3611 122 13 6 chr12 104611988 104612511 -39669978 - MER1A DNA MER1_type 0 527 1 1961 171 37 28 chr12 104613087 104613634 -39668855 + MLT2A2 LTR ERVL 2 554 0 810 283 69 12 chr12 104615723 104615970 -39666519 - MIR SINE MIR 0 262 2 477 294 188 8 chr12 104616242 104616497 -39665992 - MLT1K LTR MaLR -18 570 270 1577 157 14 29 chr12 104616699 104616979 -39665510 - AluJo SINE Alu -13 299 24 22 0 0 0 chr12 104619853 104619875 -39662614 + AT_rich Low_complexity Low_complexity 1 22 0 203 375 0 0 chr12 104621941 104622013 -39660476 + L2 LINE L2 3201 3272 0 1419 205 136 29 chr12 104622432 104622851 -39659638 + MER31B LTR ERV1 3 466 0 257 349 0 0 chr12 104623109 104623195 -39659294 - L2 LINE L2 0 3313 3228 27 49 0 0 chr12 104623217 104623258 -39659231 + AT_rich Low_complexity Low_complexity 1 41 0 2760 120 38 7 chr12 104623481 104623932 -39658557 + MER4C LTR ERV1 1 465 0 264 235 0 0 chr12 104623954 104624005 -39658484 + L2 LINE L2 3259 3309 -4 614 273 39 0 chr12 104624288 104624442 -39658047 - MIR SINE MIR -37 225 66 373 289 0 0 chr12 104624448 104624531 -39657958 - MIR SINE MIR -157 105 23 190 266 34 41 chr12 104624973 104625049 -39657440 + MIR SINE MIR 75 150 -59 2295 109 0 0 chr12 104625442 104625746 -39656743 + AluSc SINE Alu 1 304 -5 2022 126 16 19 chr12 104625894 104626204 -39656285 - AluSx SINE Alu -3 309 1 851 130 55 0 chr12 104626868 104626891 -39655598 - AluSg/x SINE Alu -5 305 285 459 0 0 0 chr12 104626891 104626942 -39655547 + (TG)n Simple_repeat Simple_repeat 2 52 0 851 130 55 0 chr12 104626942 104627064 -39655425 - AluSg/x SINE Alu -25 285 152 2507 50 0 3 chr12 104627375 104627673 -39654816 + AluY SINE Alu 1 297 -14 404 301 44 55 chr12 104628328 104628511 -39653978 + MIR SINE MIR 36 216 -46 246 316 0 0 chr12 104628574 104628650 -39653839 + (TA)n Simple_repeat Simple_repeat 1 76 0 340 278 0 21 chr12 104629411 104629508 -39652981 - L2 LINE L2 -1 3312 3218 201 74 0 0 chr12 104630069 104630096 -39652393 + (CATA)n Simple_repeat Simple_repeat 2 28 0 317 93 19 0 chr12 104630116 104630170 -39652319 + (TG)n Simple_repeat Simple_repeat 2 56 0 24 0 0 0 chr12 104630368 104630392 -39652097 + AT_rich Low_complexity Low_complexity 1 24 0 287 289 86 47 chr12 104630641 104630769 -39651720 - L2 LINE L2 -4 3268 3136 2274 64 0 0 chr12 104630834 104631144 -39651345 - AluY SINE Alu 0 310 1 223 365 71 46 chr12 104631182 104631464 -39651025 + L2 LINE L2 2951 3239 -33 21 0 0 0 chr12 104632832 104632853 -39649636 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 104633016 104633039 -39649450 + AT_rich Low_complexity Low_complexity 1 23 0 670 291 152 49 chr12 104633045 104633606 -39648883 - L1MD2 LINE L1 -302 5819 5266 2270 112 0 13 chr12 104633848 104634161 -39648328 + AluSc SINE Alu 1 309 0 272 286 52 52 chr12 104634172 104634233 -39648256 + HAL1 LINE L1 1658 1718 -789 2151 197 108 92 chr12 104634233 104635044 -39647445 - LTR1B LTR ERV1 0 826 3 272 286 52 52 chr12 104635044 104635136 -39647353 + HAL1 LINE L1 1717 1811 -696 1138 171 8 25 chr12 104635144 104635383 -39647106 - MER21B LTR ERV1 0 863 629 825 218 47 0 chr12 104635391 104635561 -39646928 - MER21B LTR ERV1 -685 178 1 341 268 46 59 chr12 104635566 104635805 -39646684 + HAL1 LINE L1 1814 2049 -458 1182 271 73 31 chr12 104635831 104636599 -39645890 + L1M4 LINE L1 3186 3985 -2161 1446 194 11 81 chr12 104636601 104637035 -39645454 + MER83B-int LTR ERV1 1132 3360 -3401 1460 278 83 20 chr12 104637039 104638149 -39644340 + L1M4 LINE L1 3995 5301 -845 2328 141 116 0 chr12 104638260 104638692 -39643797 - MER41E LTR ERV1 0 512 31 4193 150 8 4 chr12 104638692 104639400 -39643089 + MER50 LTR ERV1 1 711 -23 519 191 6 44 chr12 104639489 104639672 -39642817 + CT-rich Low_complexity Low_complexity 1 176 0 384 288 25 75 chr12 104639673 104639739 -39642750 + MIR SINE MIR 43 111 -151 2214 179 15 0 chr12 104639739 104640136 -39642353 - MER57A LTR ERV1 0 403 1 384 288 25 75 chr12 104640136 104640229 -39642260 + MIR SINE MIR 111 194 -68 306 324 59 0 chr12 104640253 104640355 -39642134 + L1M4 LINE L1 3724 3831 -2315 282 233 0 0 chr12 104640393 104640466 -39642023 + MIR SINE MIR 133 205 -57 452 314 80 34 chr12 104640862 104641187 -39641302 + L1M4 LINE L1 4268 4607 -1539 21 57 0 0 chr12 104641200 104641235 -39641254 + AT_rich Low_complexity Low_complexity 1 35 0 1969 147 11 0 chr12 104641375 104641660 -39640829 + AluSg SINE Alu 6 293 -17 186 171 0 0 chr12 104642124 104642165 -39640324 + (CA)n Simple_repeat Simple_repeat 1 41 0 256 336 82 8 chr12 104642655 104642789 -39639700 - MIR SINE MIR -53 209 66 451 328 62 63 chr12 104643061 104643252 -39639237 + L2 LINE L2 2768 2958 -355 2141 109 19 51 chr12 104643252 104643627 -39638862 + THE1B LTR MaLR 2 364 0 451 328 62 63 chr12 104643627 104643697 -39638792 + L2 LINE L2 2958 3027 -286 1807 161 0 29 chr12 104643697 104644013 -39638476 + AluJo SINE Alu 1 307 -5 451 328 62 63 chr12 104644013 104644292 -39638197 + L2 LINE L2 3027 3309 -4 228 294 153 0 chr12 104647230 104647315 -39635174 - MIR SINE MIR -8 254 157 1226 188 46 106 chr12 104647390 104647778 -39634711 - MLT1A1 LTR MaLR 0 365 1 254 235 0 0 chr12 104648319 104648397 -39634092 - L1ME LINE L1 -723 5439 5362 387 0 0 0 chr12 104648468 104648511 -39633978 + (TG)n Simple_repeat Simple_repeat 2 44 0 945 305 41 14 chr12 104648550 104649133 -39633356 - L1ME LINE L1 -919 5227 4629 34 24 0 0 chr12 104649236 104649277 -39633212 + AT_rich Low_complexity Low_complexity 1 41 0 393 273 76 51 chr12 104649491 104649753 -39632736 - L1ME LINE L1 -1486 4660 4379 7122 57 8 0 chr12 104649753 104650981 -39631508 - L1PA7 LINE L1 -6 6148 4915 393 273 76 51 chr12 104650981 104651112 -39631377 - L1ME LINE L1 -1767 4379 4253 301 193 84 12 chr12 104651122 104651205 -39631284 - L1ME LINE L1 -1950 4196 4108 222 353 103 17 chr12 104652124 104652240 -39630249 - L2 LINE L2 -8 3264 3139 1504 247 120 28 chr12 104652323 104652866 -39629623 - MLT1E LTR MaLR 0 593 1 419 305 33 13 chr12 104653069 104653220 -39629269 - MIR SINE MIR -20 242 89 263 326 90 43 chr12 104653365 104653666 -39628823 - L2 LINE L2 -661 2653 2339 626 298 117 31 chr12 104653948 104654280 -39628209 + L2 LINE L2 2766 3154 -159 2309 179 104 66 chr12 104654280 104654980 -39627509 - LTR8A LTR ERV1 0 727 1 626 298 117 31 chr12 104654980 104655031 -39627458 + L2 LINE L2 3154 3199 -114 1041 258 58 75 chr12 104655394 104655890 -39626599 - L1MC/D LINE L1 -1994 5814 5327 352 262 24 12 chr12 104655900 104655984 -39626505 + L2 LINE L2 3185 3269 -3 362 298 35 28 chr12 104656912 104657053 -39625436 - L2 LINE L2 -8 3305 3164 230 239 60 15 chr12 104657098 104657165 -39625324 + MIR SINE MIR 180 249 -13 191 158 0 26 chr12 104657132 104657170 -39625319 + L2 LINE L2 3262 3298 -15 * 2099 126 64 14 chr12 104657524 104657881 -39624608 - THE1C LTR MaLR 0 375 1 300 373 108 20 chr12 104658172 104658628 -39623861 + L2 LINE L2 2434 2929 -385 203 343 119 32 chr12 104659522 104659799 -39622690 + L2 LINE L2 2437 2737 -577 484 250 76 8 chr12 104659869 104660001 -39622488 + MIR SINE MIR 121 261 -1 337 298 137 8 chr12 104660091 104660215 -39622274 + MIR SINE MIR 27 166 -96 2237 113 0 6 chr12 104660220 104660531 -39621958 - AluSg1 SINE Alu 0 309 1 264 366 60 19 chr12 104660558 104660826 -39621663 - L2 LINE L2 -1217 2097 1819 222 266 0 16 chr12 104661011 104661075 -39621414 - MIR SINE MIR -26 236 174 285 29 0 0 chr12 104661091 104661125 -39621364 + (TG)n Simple_repeat Simple_repeat 1 34 0 1876 139 4 0 chr12 104661129 104661416 -39621073 - AluSx SINE Alu 0 302 15 184 341 0 0 chr12 104661448 104661489 -39621000 - MIR SINE MIR -190 72 32 320 215 11 43 chr12 104661522 104661615 -39620874 - L2 LINE L2 0 3313 3224 2096 116 0 50 chr12 104661615 104661935 -39620554 + AluSg SINE Alu 1 304 -6 222 150 0 0 chr12 104662842 104662882 -39619607 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 36 40 0 0 chr12 104664012 104664062 -39618427 + AT_rich Low_complexity Low_complexity 1 50 0 311 310 59 37 chr12 104664930 104665117 -39617372 - L1ME LINE L1 -302 5819 5629 692 293 4 72 chr12 104665129 104665378 -39617111 + MIR SINE MIR 31 262 0 371 313 18 0 chr12 104665505 104665617 -39616872 + L2 LINE L2 3198 3311 -2 2829 121 7 2 chr12 104665701 104666132 -39616357 - MER57B LTR ERV1 0 434 2 449 264 114 55 chr12 104666488 104666708 -39615781 + MIR SINE MIR 28 260 -2 258 256 211 0 chr12 104667411 104667501 -39614988 - L2 LINE L2 0 3272 3164 21816 90 3 3 chr12 104667925 104672014 -39610475 + L1PA7 LINE L1 2063 6152 -2 234 224 20 0 chr12 104672042 104672091 -39610398 - MER5A DNA MER1_type -91 98 49 2515 68 0 3 chr12 104672166 104672477 -39610012 + AluY SINE Alu 1 310 -1 437 336 0 0 chr12 104672477 104672611 -39609878 + MER63A DNA MER1_type 74 207 -3 310 133 0 67 chr12 104672672 104672732 -39609757 + MER5B DNA MER1_type 1 56 -122 1297 246 77 8 chr12 104673048 104673438 -39609051 - MER74A LTR ERVL -9 549 133 214 242 61 15 chr12 104673760 104673826 -39608663 - L2 LINE L2 -2 3270 3202 1697 241 47 9 chr12 104674405 104674883 -39607606 + MLT1H LTR MaLR 14 549 0 300 318 74 42 chr12 104674883 104675177 -39607312 - MLT1L LTR MaLR -133 482 179 199 143 122 0 chr12 104676236 104676285 -39606204 + L3 LINE CR1 1248 1302 -275 231 276 17 0 chr12 104676306 104676364 -39606125 + GA-rich Low_complexity Low_complexity 2 60 0 428 297 34 43 chr12 104676414 104676623 -39605866 + L3 LINE CR1 1340 1546 -31 2214 104 0 0 chr12 104676624 104676930 -39605559 - AluSc SINE Alu 0 306 1 1806 145 51 43 chr12 104677585 104677957 -39604532 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr12 104679296 104679321 -39603168 + AT_rich Low_complexity Low_complexity 1 25 0 546 221 234 0 chr12 104679350 104679508 -39602981 - MER58A DNA MER1_type -29 195 1 243 231 156 60 chr12 104679696 104679797 -39602692 - L1M4 LINE L1 -1089 5057 4967 216 86 0 0 chr12 104679797 104679832 -39602657 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 243 231 156 60 chr12 104679832 104679999 -39602490 - L1M4 LINE L1 -1179 4967 4763 232 305 72 29 chr12 104680034 104680313 -39602176 - L1M4 LINE L1 -1486 4660 4370 313 309 8 16 chr12 104680597 104680720 -39601769 - L1M4 LINE L1 -2083 4063 3942 2399 60 0 3 chr12 104680878 104681176 -39601313 - AluY SINE Alu -14 297 1 601 318 148 26 chr12 104681228 104681781 -39600708 + L2 LINE L2 2577 3207 -106 232 353 68 16 chr12 104682665 104682974 -39599515 + L1ME LINE L1 5321 5645 -476 387 242 26 26 chr12 104683313 104683466 -39599023 + L1ME4a LINE L1 5969 6121 0 243 345 96 28 chr12 104683579 104683756 -39598733 + L2 LINE L2 2898 3086 -186 722 70 61 5 chr12 104683890 104684108 -39598381 + (TAGA)n Simple_repeat Simple_repeat 1 230 0 23 0 0 0 chr12 104685628 104685651 -39596838 + AT_rich Low_complexity Low_complexity 1 23 0 1645 201 13 0 chr12 104686025 104686333 -39596156 - AluJb SINE Alu 0 312 1 279 202 211 37 chr12 104686542 104686651 -39595838 - L2 LINE L2 -6 3307 3180 758 325 94 41 chr12 104687456 104688130 -39594359 - L2 LINE L2 0 3272 2560 428 291 68 50 chr12 104688198 104688357 -39594132 + MIR SINE MIR 8 167 -95 1784 179 11 37 chr12 104688357 104688732 -39593757 + MLT1A1 LTR MaLR 1 365 0 428 291 68 50 chr12 104688732 104688823 -39593666 + MIR SINE MIR 167 255 -7 430 250 37 53 chr12 104689824 104690012 -39592477 + MLT1K LTR MaLR 397 581 -7 190 395 82 0 chr12 104690267 104690462 -39592027 + MIR SINE MIR 1 211 -51 275 264 0 0 chr12 104690488 104690560 -39591929 + L2 LINE L2 3229 3300 -13 180 111 0 0 chr12 104690612 104690639 -39591850 + (ATGGTG)n Simple_repeat Simple_repeat 4 30 0 183 329 76 38 chr12 104690808 104690887 -39591602 - L2 LINE L2 0 3272 3191 643 301 47 21 chr12 104690908 104691144 -39591345 - MIR SINE MIR 0 262 21 673 336 92 11 chr12 104692024 104692381 -39590108 - L2 LINE L2 0 3313 2928 23863 37 8 0 chr12 104693085 104696766 -39585723 + L1PA4 LINE L1 2467 6154 -1 2141 107 0 0 chr12 104696885 104697194 -39585295 - AluSg1 SINE Alu 0 309 1 322 281 16 86 chr12 104699069 104699197 -39583292 - L2 LINE L2 0 3313 3195 320 298 9 44 chr12 104699230 104699354 -39583135 - MIR SINE MIR -66 142 36 392 348 12 8 chr12 104699800 104700050 -39582439 - L1ME4a LINE L1 -269 5852 5602 22 0 0 0 chr12 104700251 104700273 -39582216 + AT_rich Low_complexity Low_complexity 1 22 0 1722 236 96 59 chr12 104700320 104700684 -39581805 - L1ME3A LINE L1 -5 6165 5816 2701 124 51 15 chr12 104700684 104701152 -39581337 - MER31A LTR ERV1 0 485 1 1722 236 96 59 chr12 104701152 104701598 -39580891 - L1ME3A LINE L1 -354 5816 5325 589 301 88 91 chr12 104701728 104702767 -39579722 - L1MEc LINE L1 -4442 1783 793 1312 275 114 62 chr12 104703425 104704951 -39577538 - HAL1 LINE L1 0 2507 762 1633 194 7 0 chr12 104704951 104705240 -39577249 + AluJo SINE Alu 1 291 -21 1312 275 114 62 chr12 104705240 104705950 -39576539 - HAL1 LINE L1 -1745 762 90 541 240 137 11 chr12 104706097 104706272 -39576217 + MIR SINE MIR 57 253 -9 730 232 28 38 chr12 104706535 104706746 -39575743 - MER58A DNA MER1_type -12 212 4 227 278 192 13 chr12 104706804 104706955 -39575534 - MLT1J2 LTR MaLR -34 416 239 257 226 210 73 chr12 104707008 104707132 -39575357 - MLT1J2 LTR MaLR -307 143 3 665 262 141 15 chr12 104707226 104707432 -39575057 - MER45C DNA AcHobo -9 944 713 904 213 20 25 chr12 104707563 104707760 -39574729 - MER45C DNA AcHobo -757 196 1 537 295 82 14 chr12 104708176 104708383 -39574106 + MIR SINE MIR 42 262 0 1343 238 156 14 chr12 104709711 104710153 -39572336 - MLT1D LTR MaLR 0 505 1 382 310 91 68 chr12 104710217 104710569 -39571920 + L2 LINE L2 1661 2020 -1294 878 265 105 37 chr12 104710607 104711091 -39571398 + MLT1K LTR MaLR 36 581 -7 318 338 138 50 chr12 104711106 104711465 -39571024 + L2 LINE L2 2045 2371 -943 1514 219 45 62 chr12 104711465 104711936 -39570553 + MLT1C LTR MaLR 1 463 -4 318 338 138 50 chr12 104711936 104712259 -39570230 + L2 LINE L2 2371 2787 -527 293 182 50 0 chr12 104712259 104712358 -39570131 + (TA)n Simple_repeat Simple_repeat 2 105 0 352 345 124 37 chr12 104712461 104712809 -39569680 + L2 LINE L2 2923 3300 -13 220 331 79 8 chr12 104712970 104713097 -39569392 - L2 LINE L2 0 3272 3137 483 148 9 37 chr12 104713769 104713877 -39568612 + Charlie5 DNA MER1_type 2251 2355 -257 1536 87 4 37 chr12 104713913 104714155 -39568334 + L1PA8 LINE L1 5939 6172 0 405 247 0 12 chr12 104714875 104714960 -39567529 + MIR SINE MIR 41 124 -84 2641 45 0 0 chr12 104715647 104715958 -39566531 - AluY SINE Alu 0 311 1 428 253 0 10 chr12 104716431 104716530 -39565959 + MER3 DNA MER1_type 46 143 -66 1551 174 50 21 chr12 104716555 104716798 -39565691 + MER3 DNA MER1_type 2234 2493 -131 2444 71 0 0 chr12 104716798 104717107 -39565382 + AluY SINE Alu 2 310 -1 1551 174 50 21 chr12 104717107 104717243 -39565246 + MER3 DNA MER1_type 2493 2624 0 203 342 13 25 chr12 104717422 104717501 -39564988 - MIR SINE MIR -137 125 48 22 0 0 0 chr12 104717520 104717542 -39564947 + AT_rich Low_complexity Low_complexity 1 22 0 704 333 55 36 chr12 104717556 104718031 -39564458 + L1MA6 LINE L1 499 982 -5797 1040 274 11 16 chr12 104718153 104718533 -39563956 + L1MA6 LINE L1 2057 2434 -4415 13497 174 23 33 chr12 104718622 104719556 -39562933 + L1MA6 LINE L1 3236 4177 -2825 2197 99 14 0 chr12 104719556 104719839 -39562650 + AluSg SINE Alu 2 288 -22 13497 174 23 33 chr12 104719839 104722691 -39559798 + L1MA6 LINE L1 4177 6986 -16 266 337 0 0 chr12 104722759 104722845 -39559644 + MIR SINE MIR 156 241 -21 485 250 50 8 chr12 104723722 104723842 -39558647 + L2 LINE L2 3185 3309 -4 2568 50 0 0 chr12 104724058 104724358 -39558131 - AluY SINE Alu -10 301 2 1868 193 19 25 chr12 104725089 104725157 -39557332 + MLT1A1 LTR MaLR 5 72 -293 1272 177 4 25 chr12 104725157 104725394 -39557095 - MER46A DNA MER2_type -4 232 1 1868 193 19 25 chr12 104725394 104725688 -39556801 + MLT1A1 LTR MaLR 72 365 0 1008 215 88 47 chr12 104725748 104726087 -39556402 - MLT1C LTR MaLR -5 462 110 209 108 27 0 chr12 104727123 104727160 -39555329 + CT-rich Low_complexity Low_complexity 3 40 0 199 233 17 33 chr12 104727562 104727622 -39554867 - MIR SINE MIR -92 170 112 729 104 0 0 chr12 104727720 104727816 -39554673 + L1P LINE L1 3 98 -6048 * 32577 76 5 3 chr12 104727785 104732173 -39550316 + L1P LINE L1 580 4974 -1172 238 227 76 136 chr12 104732174 104732306 -39550183 + L2 LINE L2 3136 3259 -54 752 161 15 0 chr12 104732334 104732464 -39550025 - AluJo SINE Alu -178 134 3 239 292 292 0 chr12 104732505 104732635 -39549854 - MLT1J LTR MaLR -343 168 1 220 152 55 21 chr12 104732813 104732958 -39549531 + (TA)n Simple_repeat Simple_repeat 1 150 0 985 47 78 0 chr12 104733036 104733164 -39549325 + MER85 DNA T2_type 1 138 -1 289 119 0 0 chr12 104733164 104733206 -39549283 - MER85 DNA T2_type -12 127 86 2219 158 48 15 chr12 104734178 104734577 -39547912 - MSTA LTR MaLR 0 428 17 319 320 39 16 chr12 104734612 104734740 -39547749 + L2 LINE L2 3142 3272 0 452 150 0 0 chr12 104734933 104735013 -39547476 - AluS SINE Alu -2 307 228 1206 134 0 0 chr12 104735013 104735177 -39547312 - AluSq SINE Alu -143 170 7 1551 175 39 26 chr12 104735468 104735776 -39546713 - AluJo SINE Alu 0 312 1 195 42 0 0 chr12 104735903 104735927 -39546562 + (CA)n Simple_repeat Simple_repeat 2 25 0 2315 159 60 17 chr12 104736147 104736562 -39545927 + Tigger2a DNA MER2_type 1 433 -1 2080 136 39 49 chr12 104736621 104737011 -39545478 - MER61D LTR ERV1 0 501 116 663 286 87 0 chr12 104737239 104737435 -39545054 - MIR SINE MIR 0 262 50 318 358 37 72 chr12 104738616 104738937 -39543552 - L3b LINE CR1 -108 1475 1166 578 239 42 99 chr12 104740192 104740317 -39542172 - MIR SINE MIR -13 249 145 8790 26 2 1 chr12 104740317 104742130 -39540359 + L1PA3 LINE L1 4342 6155 0 578 239 42 99 chr12 104742130 104742267 -39540222 - MIR SINE MIR -117 145 2 280 289 57 82 chr12 104742910 104743104 -39539385 - MIR3 SINE MIR -17 191 3 2211 210 193 2 chr12 104743433 104744033 -39538456 - L1P LINE L1 -1881 4265 3551 1793 247 14 2 chr12 104744033 104744475 -39538014 - L1P LINE L1 -3557 2589 2143 335 311 83 39 chr12 104744476 104744656 -39537833 + L3b LINE CR1 1164 1351 -232 1240 234 14 66 chr12 104746039 104746389 -39536100 - MLT1A2 LTR MaLR 0 374 43 341 291 48 10 chr12 104746908 104747011 -39535478 - MIR SINE MIR -109 153 47 458 319 111 35 chr12 104747419 104747645 -39534844 + MIR SINE MIR 20 262 0 1913 125 32 11 chr12 104747726 104748006 -39534483 + AluSx SINE Alu 1 286 -26 243 61 0 0 chr12 104748006 104748039 -39534450 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 712 274 41 49 chr12 104748681 104748746 -39533743 - MIR SINE MIR -14 248 184 2176 118 3 0 chr12 104748746 104749042 -39533447 - AluSp SINE Alu -16 297 1 712 274 41 49 chr12 104749042 104749221 -39533268 - MIR SINE MIR -78 184 6 2131 115 77 3 chr12 104749274 104749613 -39532876 + THE1B LTR MaLR 1 364 0 204 303 15 0 chr12 104750223 104750289 -39532200 + L2 LINE L2 3244 3310 -3 198 313 24 36 chr12 104750297 104750380 -39532109 - L2 LINE L2 -75 3197 3116 978 221 73 52 chr12 104750928 104751217 -39531272 - L1ME1 LINE L1 -4 6162 5868 588 183 23 8 chr12 104751248 104751379 -39531110 - L1ME1 LINE L1 -917 5229 5097 * 873 229 89 91 chr12 104751374 104751925 -39530564 - L1ME1 LINE L1 -1433 4713 4164 27879 121 10 69 chr12 104752045 104757485 -39525004 - L1P LINE L1 -1017 5129 12 333 230 14 7 chr12 104757660 104757808 -39524681 + (TA)n Simple_repeat Simple_repeat 2 150 0 365 281 61 9 chr12 104757856 104757970 -39524519 - MIR SINE MIR -124 138 19 2999 154 91 2 chr12 104758063 104758603 -39523886 - LTR69 LTR ERVL 0 588 1 25 0 0 0 chr12 104758610 104758635 -39523854 + AT_rich Low_complexity Low_complexity 1 25 0 1781 181 0 28 chr12 104759432 104759753 -39522736 - AluJb SINE Alu 0 312 1 349 183 73 24 chr12 104759780 104759862 -39522627 - L2 LINE L2 -40 3273 3188 279 206 156 71 chr12 104759898 104760039 -39522450 + MIR SINE MIR 60 212 -50 195 42 0 0 chr12 104760053 104760077 -39522412 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2244 77 7 7 chr12 104760641 104760939 -39521550 - AluY SINE Alu -13 298 1 318 238 364 0 chr12 104761380 104761531 -39520958 + MIR SINE MIR 47 252 -10 377 265 71 0 chr12 104761616 104761714 -39520775 - MIR SINE MIR -13 249 145 180 0 0 0 chr12 104763141 104763161 -39519328 + (CAA)n Simple_repeat Simple_repeat 2 21 0 480 314 73 16 chr12 104763174 104763365 -39519124 - MIR SINE MIR -14 248 47 494 56 127 0 chr12 104763408 104763479 -39519010 - MADE1 DNA Mariner 0 80 1 198 373 18 45 chr12 104763572 104763682 -39518807 + MIR SINE MIR 1 107 -155 1120 83 7 0 chr12 104764526 104764670 -39517819 - AluY SINE Alu -166 145 1 268 301 89 16 chr12 104765537 104765660 -39516829 - MIR3 SINE MIR -46 162 31 285 378 39 13 chr12 104766958 104767114 -39515375 + L2 LINE L2 2896 3055 -217 433 373 0 13 chr12 104767455 104767691 -39514798 - LTR67 LTR ERVL -323 234 2 239 290 45 149 chr12 104767748 104767882 -39514607 + L2 LINE L2 3065 3169 -103 2292 108 3 0 chr12 104767882 104768178 -39514311 - AluSq SINE Alu -16 297 1 239 290 45 149 chr12 104768178 104768264 -39514225 + L2 LINE L2 3169 3262 -10 180 0 0 0 chr12 104768692 104768712 -39513777 + (T)n Simple_repeat Simple_repeat 1 20 0 229 331 91 54 chr12 104768840 104769248 -39513241 - L2 LINE L2 -957 2357 1935 2733 10 0 0 chr12 104770198 104770496 -39511993 + AluYa5 SINE Alu 1 298 -13 2158 255 96 28 chr12 104770719 104771797 -39510692 + L1ME LINE L1 4253 5403 -743 759 184 19 0 chr12 104771799 104771957 -39510532 + L1ME LINE L1 5561 5721 -441 * 2693 205 55 56 chr12 104771946 104772120 -39510369 + L1ME3 LINE L1 4937 5110 -1052 1628 195 7 20 chr12 104772120 104772423 -39510066 - AluJo SINE Alu -13 299 1 2693 205 55 56 chr12 104772423 104773188 -39509301 + L1ME3 LINE L1 5110 5875 -287 510 159 0 0 chr12 104773188 104773276 -39509213 + L1MB7 LINE L1 6078 6165 -19 2693 205 55 56 chr12 104773276 104773526 -39508963 + L1ME3 LINE L1 5875 6124 -38 982 285 110 45 chr12 104773579 104774300 -39508189 - L2 LINE L2 0 3313 2560 273 113 0 75 chr12 104774303 104774356 -39508133 - L2 LINE L2 -932 2382 2334 571 276 69 91 chr12 104774534 104775370 -39507119 - L1MEd LINE L1 -4862 1257 440 22 35 0 0 chr12 104775658 104775687 -39506802 + AT_rich Low_complexity Low_complexity 1 29 0 4449 276 85 17 chr12 104775742 104776806 -39505683 - L2 LINE L2 -949 2365 1157 2223 105 0 0 chr12 104776806 104777132 -39505357 + AluSq SINE Alu 1 326 0 4449 276 85 17 chr12 104777132 104777643 -39504846 - L2 LINE L2 -2157 1157 682 255 200 120 0 chr12 104778057 104778132 -39504357 + MER58 DNA MER1_type 2309 2392 -28 480 315 19 0 chr12 104778147 104778309 -39504180 - L2 LINE L2 -2625 689 525 2044 116 0 30 chr12 104778331 104778633 -39503856 - AluSc SINE Alu -16 293 1 21 0 0 0 chr12 104778643 104778664 -39503825 + AT_rich Low_complexity Low_complexity 1 21 0 319 311 126 10 chr12 104779204 104779410 -39503079 + MIR SINE MIR 1 230 -32 186 382 32 0 chr12 104780180 104780303 -39502186 + MIR SINE MIR 3 129 -133 1533 186 61 3 chr12 104780467 104780581 -39501908 + AluJo SINE Alu 1 107 -205 2210 121 0 0 chr12 104780581 104780878 -39501611 + AluSq SINE Alu 12 308 -5 1533 186 61 3 chr12 104780878 104781058 -39501431 + AluJo SINE Alu 107 312 0 513 324 155 14 chr12 104781331 104781550 -39500939 - MIR SINE MIR -2 260 11 582 283 21 43 chr12 104781846 104782125 -39500364 + MER102a DNA MER1_type 43 315 -15 317 187 103 0 chr12 104782585 104782703 -39499786 + MLT1J2 LTR MaLR 289 431 -19 626 242 43 32 chr12 104782738 104782924 -39499565 - MIR SINE MIR -43 219 32 251 382 29 7 chr12 104782949 104783085 -39499404 - L2 LINE L2 -10 3262 3124 184 286 0 0 chr12 104783098 104783140 -39499349 - L2 LINE L2 -17 3296 3255 2735 253 90 27 chr12 104783365 104784518 -39497971 - L1M4 LINE L1 -1992 4154 3075 2047 117 21 4 chr12 104784518 104784799 -39497690 + AluSx SINE Alu 1 286 -26 180 0 0 0 chr12 104784799 104784819 -39497670 + (TA)n Simple_repeat Simple_repeat 2 21 0 2735 253 90 27 chr12 104784819 104785013 -39497476 - L1M4 LINE L1 -3070 3076 2721 246 262 78 0 chr12 104785035 104785138 -39497351 - L1ME LINE L1 -468 5653 5543 22 35 0 0 chr12 104785367 104785396 -39497093 + AT_rich Low_complexity Low_complexity 1 29 0 5568 131 28 4 chr12 104785400 104786487 -39496002 - L1PA7 LINE L1 -7 6147 5036 504 0 0 0 chr12 104786589 104786645 -39495844 + (CA)n Simple_repeat Simple_repeat 2 57 0 800 226 10 15 chr12 104786684 104786883 -39495606 - MER3 DNA MER1_type -11 198 1 180 0 0 0 chr12 104787721 104787741 -39494748 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 204 40 0 0 chr12 104787740 104787765 -39494724 + (GA)n Simple_repeat Simple_repeat 1 25 0 255 150 0 0 chr12 104787765 104787825 -39494664 + (TG)n Simple_repeat Simple_repeat 1 60 0 488 293 66 96 chr12 104788524 104788806 -39493683 + L2 LINE L2 2404 2693 -621 1705 178 44 0 chr12 104788806 104789081 -39493408 + AluJo SINE Alu 1 287 -25 488 293 66 96 chr12 104789081 104789101 -39493388 + L2 LINE L2 2693 2712 -602 2026 141 0 0 chr12 104789101 104789384 -39493105 + AluSg SINE Alu 1 283 -27 488 293 66 96 chr12 104789384 104789568 -39492921 + L2 LINE L2 2712 2876 -438 573 311 131 29 chr12 104789598 104789942 -39492547 + L2 LINE L2 2935 3313 0 263 349 23 30 chr12 104790115 104790247 -39492242 + MIR SINE MIR 2 132 -130 285 320 94 39 chr12 104790460 104790663 -39491826 + MIR SINE MIR 20 233 -29 1169 209 57 122 chr12 104791193 104791590 -39490899 + MLT1C LTR MaLR 6 366 -101 4955 94 10 13 chr12 104791590 104792302 -39490187 + L1PB2 LINE L1 5434 6143 -8 1169 209 57 122 chr12 104792302 104792398 -39490091 + MLT1C LTR MaLR 366 467 0 2659 188 25 0 chr12 104792495 104793063 -39489426 + L1MA10 LINE L1 3656 4237 -1909 5560 164 22 19 chr12 104793075 104795069 -39487420 + L1MA10 LINE L1 4330 6332 -2 346 275 70 48 chr12 104795396 104795625 -39486864 + LTR16C LTR ERVL 258 491 0 428 246 9 35 chr12 104795636 104795750 -39486739 + MIR SINE MIR 152 262 0 228 369 92 8 chr12 104796633 104796763 -39485726 - L2 LINE L2 -7 3265 3125 718 214 0 0 chr12 104796978 104797118 -39485371 + MER46A DNA MER2_type 8 147 -89 360 0 0 0 chr12 104797148 104797188 -39485301 + (T)n Simple_repeat Simple_repeat 1 40 0 294 318 82 47 chr12 104797501 104797671 -39484818 - MIR SINE MIR -6 256 81 587 236 127 0 chr12 104797839 104798004 -39484485 + MER5A DNA MER1_type 4 189 0 185 173 269 0 chr12 104798556 104798608 -39483881 - L2 LINE L2 -546 2768 2703 240 270 161 22 chr12 104798750 104798887 -39483602 - MER103 DNA DNA -9 157 2 268 330 0 21 chr12 104799094 104799224 -39483265 + GA-rich Low_complexity Low_complexity 1 127 0 1329 226 29 48 chr12 104799427 104799842 -39482647 - MLT1C LTR MaLR -55 412 6 386 222 5 16 chr12 104801412 104801529 -39480960 + MIR SINE MIR 98 211 -51 189 191 21 21 chr12 104801605 104801652 -39480837 + MIR SINE MIR 216 262 0 195 42 0 0 chr12 104801676 104801700 -39480789 + (TTCTG)n Simple_repeat Simple_repeat 1 24 0 2149 126 3 0 chr12 104801745 104802047 -39480442 - AluSx SINE Alu -9 303 1 1417 269 74 49 chr12 104802068 104802622 -39479867 - MLT1G LTR MaLR -12 578 11 309 307 33 154 chr12 104802683 104803136 -39479353 - L2 LINE L2 -2583 731 334 520 236 136 68 chr12 104803415 104803595 -39478894 - MLT1L LTR MaLR -221 394 228 4809 102 9 18 chr12 104803595 104804328 -39478161 + L1PA15 LINE L1 5439 6165 0 520 236 136 68 chr12 104804328 104804515 -39477974 - MLT1L LTR MaLR -387 228 2 1823 151 0 25 chr12 104804610 104804889 -39477600 + AluSq SINE Alu 33 304 -9 205 300 45 45 chr12 104804947 104805057 -39477432 + L2 LINE L2 3125 3234 -79 831 296 87 21 chr12 104805801 104806135 -39476354 - L3 LINE CR1 -1 1576 1221 203 133 0 0 chr12 104806588 104806618 -39475871 + (TGG)n Simple_repeat Simple_repeat 2 31 0 448 241 86 11 chr12 104807442 104807616 -39474873 + MLT1J LTR MaLR 9 195 -316 394 218 29 48 chr12 104807654 104807809 -39474680 + L1MDa LINE L1 34 311 -6232 279 141 16 31 chr12 104807963 104808027 -39474462 + L1ME1 LINE L1 6084 6146 -20 841 314 96 93 chr12 104808254 104809057 -39473432 - L3 LINE CR1 -657 920 116 1279 301 87 11 chr12 104809241 104809826 -39472663 - L2 LINE L2 0 3313 2671 298 270 0 0 chr12 104809838 104809901 -39472588 - L2 LINE L2 0 3313 3251 1389 261 109 57 chr12 104809940 104810535 -39471954 - L2 LINE L2 -507 2807 2182 1774 190 46 153 chr12 104810537 104811349 -39471140 - LTR8A LTR ERV1 -2 725 1 1460 299 77 28 chr12 104811349 104811982 -39470507 - L2 LINE L2 -1129 2185 1522 386 335 127 16 chr12 104812475 104812720 -39469769 - L2 LINE L2 -411 2903 2632 1595 166 15 8 chr12 104812726 104813165 -39469324 + AluSx SINE Alu 39 479 0 1206 95 0 6 chr12 104812986 104813232 -39469257 + (GAAA)n Simple_repeat Simple_repeat 3 247 0 919 319 46 49 chr12 104813232 104813799 -39468690 - L2 LINE L2 -652 2662 2098 291 315 85 31 chr12 104816066 104816196 -39466293 + L2 LINE L2 3171 3307 -6 402 353 26 52 chr12 104816939 104817171 -39465318 + MIR SINE MIR 2 227 -35 327 314 63 23 chr12 104817218 104817393 -39465096 - MIR SINE MIR -79 183 2 722 291 54 14 chr12 104817889 104818243 -39464246 - LTR33 LTR ERVL -82 439 72 196 222 28 93 chr12 104818318 104818426 -39464063 - L2 LINE L2 -172 3141 3041 571 70 0 0 chr12 104818432 104818503 -39463986 + FLAM SINE Alu 55 125 -18 1271 308 92 19 chr12 104818624 104819263 -39463226 - L2 LINE L2 -405 2909 2224 1273 237 94 22 chr12 104819286 104819749 -39462740 + MLT1H LTR MaLR 13 549 0 203 222 0 22 chr12 104819751 104819796 -39462693 - L2 LINE L2 -1099 2215 2172 1207 269 53 47 chr12 104819814 104820286 -39462203 - MLT1E LTR MaLR 0 593 119 546 291 24 18 chr12 104820284 104820449 -39462040 - MLT1E LTR MaLR -427 166 1 * 425 197 126 71 chr12 104820455 104820582 -39461907 - MER5B DNA MER1_type -24 154 21 366 287 169 7 chr12 104820572 104820708 -39461781 - MER5A DNA MER1_type -16 173 16 * 3928 265 79 95 chr12 104820713 104821704 -39460785 - L2 LINE L2 -1149 2165 1159 1011 198 63 5 chr12 104821704 104821911 -39460578 - MER20 DNA MER1_type 0 219 1 3928 265 79 95 chr12 104821911 104822994 -39459495 - L2 LINE L2 -2155 1159 126 193 365 0 14 chr12 104823079 104823153 -39459336 - L2 LINE L2 -3191 123 51 693 330 57 57 chr12 104823804 104824438 -39458051 - L2 LINE L2 -475 2839 2206 2040 135 73 0 chr12 104824455 104824796 -39457693 - MER47A DNA MER2_type 0 366 1 224 182 23 0 chr12 104824796 104824840 -39457649 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 236 259 60 52 chr12 104825185 104825301 -39457188 + LTR67 LTR ERVL 439 555 -2 365 289 63 13 chr12 104825525 104825684 -39456805 + L3 LINE CR1 739 905 -672 312 220 110 0 chr12 104825723 104825814 -39456675 - MER53 DNA DNA -88 101 1 275 349 99 32 chr12 104825821 104826105 -39456384 + L3 LINE CR1 903 1205 -372 278 318 0 9 chr12 104826170 104826277 -39456212 + LTR67 LTR ERVL 432 537 -20 378 298 123 25 chr12 104826436 104826671 -39455818 + L3 LINE CR1 1220 1477 -100 925 290 36 0 chr12 104826952 104827204 -39455285 - MIR SINE MIR 0 262 2 2303 103 0 6 chr12 104827437 104827749 -39454740 + AluSg SINE Alu 1 310 0 1927 130 76 17 chr12 104828981 104829335 -39453154 - THE1C LTR MaLR 0 375 1 977 311 52 61 chr12 104829966 104830507 -39451982 - MER115 DNA AcHobo -3 690 155 201 381 74 48 chr12 104830697 104830886 -39451603 - L2 LINE L2 -4 3268 3075 212 287 10 0 chr12 104831672 104831773 -39450716 + (TA)n Simple_repeat Simple_repeat 2 103 0 225 0 0 0 chr12 104831834 104831859 -39450630 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr12 104831879 104831901 -39450588 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr12 104831914 104831950 -39450539 + AT_rich Low_complexity Low_complexity 1 36 0 327 335 66 47 chr12 104832053 104832265 -39450224 - MIR SINE MIR -13 249 34 28 0 0 0 chr12 104832444 104832472 -39450017 + AT_rich Low_complexity Low_complexity 1 28 0 1536 88 0 0 chr12 104832481 104832696 -39449793 - L1PA13 LINE L1 0 6163 5949 231 217 0 33 chr12 104832714 104832774 -39449715 + CT-rich Low_complexity Low_complexity 1 58 0 433 262 34 27 chr12 104832779 104832928 -39449561 - L1ME LINE L1 -409 5712 5563 532 269 28 11 chr12 104833299 104833481 -39449008 + HAL1 LINE L1 2288 2472 -35 21 0 0 0 chr12 104833510 104833531 -39448958 + AT_rich Low_complexity Low_complexity 1 21 0 836 264 24 5 chr12 104834010 104834218 -39448271 + MIR SINE MIR 41 252 -10 247 343 128 52 chr12 104834295 104834467 -39448022 + MIR SINE MIR 4 188 -74 609 28 111 0 chr12 104834507 104834767 -39447722 + (TA)n Simple_repeat Simple_repeat 1 288 0 492 44 113 0 chr12 104834873 104835032 -39447457 + (TA)n Simple_repeat Simple_repeat 2 178 0 550 43 106 0 chr12 104835048 104835209 -39447280 + (TA)n Simple_repeat Simple_repeat 2 179 0 2448 77 0 0 chr12 104835264 104835562 -39446927 + AluY SINE Alu 1 298 -13 1694 230 91 35 chr12 104835871 104836411 -39446078 - MLT1E LTR MaLR -9 584 15 25 31 0 0 chr12 104836858 104836890 -39445599 + AT_rich Low_complexity Low_complexity 1 32 0 196 208 57 19 chr12 104837206 104837259 -39445230 + MIR SINE MIR 109 163 -99 21 36 0 0 chr12 104837301 104837329 -39445160 + AT_rich Low_complexity Low_complexity 1 28 0 1292 216 16 4 chr12 104837606 104837861 -39444628 + MIR SINE MIR 4 261 -1 184 330 80 27 chr12 104837843 104837955 -39444534 - L2 LINE L2 -13 3300 3183 * 195 333 0 0 chr12 104837974 104838028 -39444461 + L2 LINE L2 2429 2482 -832 739 268 129 0 chr12 104838332 104838556 -39443933 + MIR SINE MIR 2 254 -8 1899 256 37 37 chr12 104838688 104839259 -39443230 + MLT1E LTR MaLR 1 571 -22 194 327 106 9 chr12 104839272 104839385 -39443104 + L2 LINE L2 2979 3102 -170 33 0 0 0 chr12 104840019 104840052 -39442437 + AT_rich Low_complexity Low_complexity 1 33 0 383 98 0 0 chr12 104841039 104841104 -39441385 - MLT1D LTR MaLR 0 505 450 6791 194 24 5 chr12 104841104 104842401 -39440088 + L1MA4A LINE L1 2 1322 -5527 * 11427 165 28 27 chr12 104842396 104846024 -39436465 + L1MA4A LINE L1 3364 6983 -22 1361 211 124 17 chr12 104846032 104846435 -39436054 - MLT1D LTR MaLR -53 452 7 564 256 65 83 chr12 104848203 104848432 -39434057 - MIR SINE MIR -2 260 39 267 203 87 14 chr12 104848601 104848670 -39433819 - MER5A DNA MER1_type -77 112 39 340 287 64 0 chr12 104848715 104848809 -39433680 - MER5B DNA MER1_type 0 178 79 1729 145 4 22 chr12 104850342 104850611 -39431878 + AluSx SINE Alu 2 265 -47 734 59 0 10 chr12 104850623 104850724 -39431765 + (GGGAA)n Simple_repeat Simple_repeat 3 102 0 1124 98 0 25 chr12 104850825 104851131 -39431358 + (GGGAA)n Simple_repeat Simple_repeat 4 299 0 367 253 0 0 chr12 104851875 104851962 -39430527 - LTR33A LTR ERVL -4 519 433 349 312 55 30 chr12 104852430 104852629 -39429860 + L2 LINE L2 2479 2682 -632 277 281 25 94 chr12 104852629 104852788 -39429701 + MER20 DNA MER1_type 1 140 -79 1738 261 66 38 chr12 104852788 104853397 -39429092 - MLT1E2 LTR MaLR 0 626 1 277 281 25 94 chr12 104853397 104853472 -39429017 + MER20 DNA MER1_type 140 219 0 469 352 34 68 chr12 104853475 104854093 -39428396 + L2 LINE L2 2689 3272 0 194 296 86 12 chr12 104854211 104854292 -39428197 - MIR SINE MIR -71 191 105 2227 116 0 13 chr12 104854292 104854593 -39427896 + AluSc SINE Alu 1 297 -12 347 349 41 0 chr12 104854761 104854907 -39427582 - MIR SINE MIR -77 185 34 363 293 48 66 chr12 104855290 104855320 -39427169 - MLT1K LTR MaLR 0 588 559 2111 244 42 10 chr12 104855320 104855841 -39426648 + MLT1F LTR MaLR 5 542 0 363 293 48 66 chr12 104855841 104856083 -39426406 - MLT1K LTR MaLR -29 559 321 286 289 22 22 chr12 104856671 104856761 -39425728 - MIR SINE MIR -164 98 9 327 362 53 7 chr12 104857234 104857386 -39425103 + MIR SINE MIR 66 224 -38 2044 161 52 26 chr12 104857388 104857809 -39424680 + MSTB1 LTR MaLR 1 432 0 746 267 69 9 chr12 104858530 104858747 -39423742 + MIR SINE MIR 33 262 0 353 350 42 14 chr12 104859945 104860088 -39422401 + L3 LINE CR1 1332 1478 -99 397 278 34 22 chr12 104860225 104860384 -39422105 + MIR SINE MIR 15 174 -64 545 296 136 14 chr12 104860812 104861032 -39421457 - MIR SINE MIR -15 247 1 465 209 61 9 chr12 104861118 104861233 -39421256 + L1ME4a LINE L1 5999 6119 -2 2129 128 7 0 chr12 104862093 104862391 -39420098 - AluSx SINE Alu -12 300 1 270 309 65 50 chr12 104862498 104862699 -39419790 + L2 LINE L2 3029 3232 -40 395 273 0 0 chr12 104862699 104862787 -39419702 - MIR SINE MIR -78 130 43 549 268 0 66 chr12 104863639 104863822 -39418667 - MIR SINE MIR -2 260 90 639 129 7 34 chr12 104864262 104864409 -39418080 + (GGAA)n Simple_repeat Simple_repeat 4 146 0 224 276 207 43 chr12 104866013 104866129 -39416360 - L2 LINE L2 0 3272 3138 465 198 11 0 chr12 104866136 104866227 -39416262 - MER53 DNA DNA -94 95 4 994 181 0 0 chr12 104866258 104866424 -39416065 - FRAM SINE Alu 0 166 1 2060 133 71 66 chr12 104866469 104867070 -39415419 - L1MA9 LINE L1 -611 5701 5087 3298 157 14 24 chr12 104867070 104867696 -39414793 + L1MA9 LINE L1 5688 6307 -5 300 317 120 91 chr12 104867734 104868189 -39414300 - L2 LINE L2 -243 3029 2589 276 30 0 0 chr12 104868189 104868222 -39414267 + (TA)n Simple_repeat Simple_repeat 1 33 0 464 231 85 15 chr12 104868228 104868358 -39414131 - MIR SINE MIR -85 177 39 300 317 120 91 chr12 104868358 104868758 -39413731 - L2 LINE L2 -687 2585 2013 1904 175 39 11 chr12 104868758 104869113 -39413376 + MLT1A1 LTR MaLR 1 365 0 1847 141 0 14 chr12 104869140 104869416 -39413073 + AluSx SINE Alu 1 272 -40 1100 147 0 12 chr12 104869422 104869748 -39412741 + (GAA)n Simple_repeat Simple_repeat 2 323 0 7051 216 84 32 chr12 104869748 104871012 -39411477 + MLT1A1-int LTR MaLR 26 1394 -341 3641 136 3 3 chr12 104871012 104871578 -39410911 - L1PB3 LINE L1 -2 6152 5587 7051 216 84 32 chr12 104871578 104871939 -39410550 + MLT1A1-int LTR MaLR 1394 1735 0 1969 199 6 6 chr12 104871939 104872296 -39410193 + MLT1A1 LTR MaLR 1 357 -8 467 254 118 65 chr12 104872975 104873298 -39409191 + L1MEd LINE L1 321 660 -5459 211 297 66 22 chr12 104873702 104873793 -39408696 - L2 LINE L2 -1365 1949 1855 5222 187 29 35 chr12 104874711 104878913 -39403576 + L1MA9 LINE L1 3 5290 -1816 2178 49 0 8 chr12 104878913 104879180 -39403309 + AluY SINE Alu 35 299 -12 5222 187 29 35 chr12 104879180 104879250 -39403239 + L1MA9 LINE L1 5290 5359 -1747 * 5950 148 19 16 chr12 104879249 104880321 -39402168 + L1MA9 LINE L1 6197 7271 -1 1808 215 21 61 chr12 104880883 104881409 -39401080 - MLT1D LTR MaLR 0 505 1 339 25 0 0 chr12 104882339 104882379 -39400110 + (TC)n Simple_repeat Simple_repeat 1 40 0 288 0 0 0 chr12 104882378 104882410 -39400079 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 2239 129 24 16 chr12 104884828 104885200 -39397289 - THE1C LTR MaLR 0 375 1 563 258 206 12 chr12 104885683 104886013 -39396476 + L2 LINE L2 2919 3312 -1 905 190 11 17 chr12 104886209 104886388 -39396101 - MER5B DNA MER1_type 0 178 1 318 304 108 0 chr12 104888042 104888144 -39394345 - MIR3 SINE MIR -9 199 87 998 246 105 93 chr12 104889265 104889768 -39392721 - MLT1J LTR MaLR -2 509 1 895 246 118 59 chr12 104889891 104890350 -39392139 - MLT1H LTR MaLR -60 489 4 1025 263 111 38 chr12 104891129 104891469 -39391020 + L2 LINE L2 2749 3140 -173 1967 108 0 25 chr12 104891469 104891746 -39390743 - AluSc SINE Alu -39 270 1 1025 263 111 38 chr12 104891746 104891929 -39390560 + L2 LINE L2 3140 3308 -5 180 200 0 0 chr12 104891972 104892012 -39390477 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 28 0 0 0 chr12 104892466 104892494 -39389995 + AT_rich Low_complexity Low_complexity 1 28 0 308 358 52 36 chr12 104892860 104893190 -39389299 + L2 LINE L2 2545 2879 -435 634 284 126 14 chr12 104893493 104893708 -39388781 - MIR SINE MIR -15 247 9 310 250 21 42 chr12 104893801 104893897 -39388592 - MIR SINE MIR -75 133 40 393 317 97 11 chr12 104894176 104894362 -39388127 - MIR SINE MIR 0 262 61 2228 112 0 0 chr12 104894650 104894944 -39387545 - AluSx SINE Alu -18 294 1 663 104 0 0 chr12 104895233 104895329 -39387160 - AluY SINE Alu -10 301 206 510 79 0 0 chr12 104896014 104896090 -39386399 + (TGGA)n Simple_repeat Simple_repeat 1 76 0 2108 121 97 15 chr12 104896156 104896486 -39386003 - THE1B LTR MaLR -2 362 6 294 29 0 0 chr12 104896486 104896521 -39385968 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 27 29 0 0 chr12 104898474 104898508 -39383981 + AT_rich Low_complexity Low_complexity 1 34 0 34 65 0 0 chr12 104898721 104898783 -39383706 + AT_rich Low_complexity Low_complexity 1 62 0 672 31 0 31 chr12 104899123 104899221 -39383268 + (GGAA)n Simple_repeat Simple_repeat 1 95 0 906 245 21 0 chr12 104899257 104899445 -39383044 + L1MB7 LINE L1 102 293 -6566 2171 181 2 23 chr12 104899518 104899916 -39382573 - MLT1B LTR MaLR 0 390 1 25 31 0 0 chr12 104899922 104899954 -39382535 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 104900145 104900166 -39382323 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 104900356 104900377 -39382112 + AT_rich Low_complexity Low_complexity 1 21 0 1681 246 14 8 chr12 104900378 104900955 -39381534 + L1MB7 LINE L1 2853 3393 -3564 7112 213 85 20 chr12 104900959 104903007 -39379482 + L1MB7 LINE L1 3896 6168 -827 1600 199 3 33 chr12 104903007 104903313 -39379176 + AluJo SINE Alu 1 297 -15 7112 213 85 20 chr12 104903313 104904189 -39378300 + L1MB7 LINE L1 6168 6986 -9 365 313 23 0 chr12 104904362 104904490 -39377999 + MIR SINE MIR 106 236 -26 2360 98 0 3 chr12 104904562 104904859 -39377630 - AluSx SINE Alu -14 298 3 405 264 84 26 chr12 104905537 104905692 -39376797 + MIR SINE MIR 6 169 -93 1432 189 128 0 chr12 104905863 104906169 -39376320 + MER2 DNA MER2_type 1 345 0 314 261 9 52 chr12 104906372 104906487 -39376002 + MIR SINE MIR 111 220 -42 246 287 20 50 chr12 104907330 104907431 -39375058 - MLT1J LTR MaLR -192 319 222 207 145 16 32 chr12 104907795 104907857 -39374632 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 761 211 8 0 chr12 104907993 104908121 -39374368 + FLAM_C SINE Alu 4 132 -11 293 250 43 0 chr12 104908691 104908783 -39373706 - L1MC4 LINE L1 -1333 6709 6614 226 260 0 62 chr12 104908701 104908797 -39373692 + L1MC4 LINE L1 6614 6703 -1339 * 268 353 0 10 chr12 104908797 104908812 -39373677 + (CA)n Simple_repeat Simple_repeat 2 16 -86 195 42 0 0 chr12 104908812 104908836 -39373653 + (TG)n Simple_repeat Simple_repeat 1 24 0 268 353 0 10 chr12 104908836 104908856 -39373633 + (CA)n Simple_repeat Simple_repeat 16 35 -67 2535 98 24 56 chr12 104908856 104909232 -39373257 - THE1B LTR MaLR 0 364 1 268 353 0 10 chr12 104909232 104909297 -39373192 + (CA)n Simple_repeat Simple_repeat 35 102 0 204 40 0 0 chr12 104909303 104909328 -39373161 + (TA)n Simple_repeat Simple_repeat 1 25 0 351 230 24 105 chr12 104909342 104909551 -39372938 - HAL1 LINE L1 -17 2490 2299 1899 170 10 6 chr12 104909556 104909867 -39372622 - AluJb SINE Alu 0 312 1 2208 184 65 69 chr12 104910155 104910374 -39372115 + MLT2B1 LTR ERVL 1 219 -301 617 69 11 0 chr12 104910374 104910461 -39372028 + (TC)n Simple_repeat Simple_repeat 1 88 0 2208 184 65 69 chr12 104910461 104910763 -39371726 + MLT2B1 LTR ERVL 219 520 0 503 188 9 0 chr12 104911338 104911450 -39371039 + CT-rich Low_complexity Low_complexity 2 114 0 2023 148 7 0 chr12 104911919 104912216 -39370273 + AluSx SINE Alu 1 299 -13 198 103 0 0 chr12 104913947 104913976 -39368513 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 197 232 43 72 chr12 104913996 104914065 -39368424 - L2 LINE L2 -40 3232 3166 231 241 0 60 chr12 104914312 104914395 -39368094 - L1P4 LINE L1 -300 5865 5788 314 283 254 24 chr12 104915443 104915648 -39366841 - L3 LINE CR1 -27 1550 1299 199 323 40 10 chr12 104915943 104916042 -39366447 - L3 LINE CR1 -316 1261 1160 703 340 50 58 chr12 104916052 104916823 -39365666 + L2 LINE L2 2482 3253 -19 1944 129 7 0 chr12 104917083 104917355 -39365134 + AluSx SINE Alu 28 301 -11 652 236 146 9 chr12 104917368 104917580 -39364909 + MIR SINE MIR 1 241 -21 832 178 23 29 chr12 104917612 104917786 -39364703 + MLT1A2 LTR MaLR 189 361 -13 195 319 42 0 chr12 104917803 104917875 -39364614 + MIR SINE MIR 113 187 -75 239 299 91 0 chr12 104917934 104918011 -39364478 + MIR SINE MIR 69 152 -110 2352 170 31 12 chr12 104918090 104918513 -39363976 + MER95 LTR ERV 1 431 0 32 75 0 0 chr12 104918513 104918580 -39363909 + AT_rich Low_complexity Low_complexity 1 67 0 718 227 12 31 chr12 104918793 104918956 -39363533 - MLT1A2 LTR MaLR -214 160 1 242 290 130 30 chr12 104919078 104919178 -39363311 - MER5B DNA MER1_type -68 110 1 205 291 191 37 chr12 104920873 104920944 -39361545 + MIR SINE MIR 20 79 -183 3063 116 36 20 chr12 104920944 104921394 -39361095 + MSTB2 LTR MaLR 1 457 0 205 291 191 37 chr12 104921394 104921511 -39360978 + MIR SINE MIR 79 237 -25 330 254 103 32 chr12 104921795 104922051 -39360438 + MLT1L LTR MaLR 252 565 -50 277 253 84 11 chr12 104922203 104922298 -39360191 - MIR SINE MIR -147 115 14 768 255 75 35 chr12 104922758 104923013 -39359476 - L2 LINE L2 0 3313 3049 331 294 55 0 chr12 104923026 104923172 -39359317 + HAL1b LINE L1 759 912 -436 321 341 40 29 chr12 104923317 104923490 -39358999 + MER117 DNA MER1_type 7 181 -16 209 246 98 16 chr12 104924855 104924916 -39357573 - L2 LINE L2 -17 3255 3190 277 395 58 19 chr12 104925294 104925605 -39356884 - L2 LINE L2 -453 2861 2539 241 333 98 66 chr12 104926100 104926283 -39356206 + MIR SINE MIR 15 203 -59 374 333 108 17 chr12 104926443 104926683 -39355806 + MLT1J2 LTR MaLR 189 450 0 216 0 0 0 chr12 104927034 104927058 -39355431 + (CA)n Simple_repeat Simple_repeat 1 24 0 2572 169 43 51 chr12 104927176 104927685 -39354804 + MLT1D LTR MaLR 1 505 0 2525 147 2 13 chr12 104928275 104928669 -39353820 + MLT1B LTR MaLR 1 390 0 276 298 0 0 chr12 104928837 104928921 -39353568 - MIR SINE MIR -4 258 175 182 103 0 26 chr12 104928940 104928979 -39353510 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 444 300 24 35 chr12 104931188 104931358 -39351131 - MIR SINE MIR -90 172 5 190 239 130 76 chr12 104932344 104932436 -39350053 - L3 LINE CR1 -931 646 550 2274 132 50 26 chr12 104932452 104932832 -39349657 - MSTA LTR MaLR 0 428 40 255 292 35 62 chr12 104933296 104933377 -39349112 + L2 LINE L2 3189 3268 -45 2980 107 60 0 chr12 104933377 104933808 -39348681 + L1PA11 LINE L1 5718 6174 0 255 292 35 62 chr12 104933808 104933839 -39348650 + L2 LINE L2 3268 3298 -15 * 790 241 47 70 chr12 104933838 104934151 -39348338 + L2 LINE L2 2899 3313 0 201 321 27 18 chr12 104934334 104934446 -39348043 + L2 LINE L2 2749 2861 -453 189 0 0 0 chr12 104935361 104935382 -39347107 + (TG)n Simple_repeat Simple_repeat 1 21 0 24 32 0 0 chr12 104935724 104935755 -39346734 + AT_rich Low_complexity Low_complexity 1 31 0 615 324 41 0 chr12 104935892 104936116 -39346373 + L1MC4a LINE L1 5616 5824 -297 347 272 0 72 chr12 104936127 104936252 -39346237 + L2 LINE L2 3197 3312 -1 21 36 0 0 chr12 104936498 104936526 -39345963 + AT_rich Low_complexity Low_complexity 1 28 0 368 314 145 6 chr12 104937635 104937794 -39344695 + MIR SINE MIR 30 210 -52 655 229 10 159 chr12 104938706 104939008 -39343481 + MIR SINE MIR 6 262 0 538 212 8 0 chr12 104939724 104939842 -39342647 - L1MA8 LINE L1 -4 6287 6169 658 125 0 36 chr12 104939842 104939954 -39342535 - L1M2 LINE L1 -498 5802 5695 2628 134 17 9 chr12 104939954 104940520 -39341969 + L1M2 LINE L1 5111 5689 -611 196 276 0 138 chr12 104940752 104940839 -39341650 + MIR SINE MIR 37 111 -97 22 0 0 0 chr12 104940920 104940942 -39341547 + AT_rich Low_complexity Low_complexity 1 22 0 1423 212 93 43 chr12 104941520 104941959 -39340530 + MLT1C LTR MaLR 6 466 -1 194 333 0 35 chr12 104942799 104942856 -39339633 + MIR SINE MIR 38 92 -116 187 254 55 0 chr12 104943493 104943548 -39338941 - MIR3 SINE MIR -7 201 144 503 232 122 50 chr12 104944803 104944984 -39337505 + MLT1K LTR MaLR 395 588 0 23 68 0 0 chr12 104945172 104945216 -39337273 + AT_rich Low_complexity Low_complexity 1 44 0 603 92 0 0 chr12 104945321 104945408 -39337081 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 624 242 110 30 chr12 104945455 104945719 -39336770 - L1ME4a LINE L1 -252 5869 5585 1487 226 25 58 chr12 104945832 104946380 -39336109 - MLT1E2 LTR MaLR 0 505 3 491 254 9 75 chr12 104948871 104949084 -39333405 + LTR33 LTR ERVL 22 220 -301 234 330 173 21 chr12 104949783 104949974 -39332515 - MIR SINE MIR -8 254 35 219 302 221 34 chr12 104949989 104950138 -39332351 + L2 LINE L2 1130 1306 -2008 1505 294 100 21 chr12 104950169 104951183 -39331306 + L2 LINE L2 2216 3312 -1 702 151 22 28 chr12 104951235 104951414 -39331075 + GA-rich Low_complexity Low_complexity 2 179 0 254 255 0 0 chr12 104951416 104951467 -39331022 + polypurine Low_complexity Low_complexity 1 51 0 8569 112 18 24 chr12 104951480 104951610 -39330879 - HSMAR2 DNA Mariner -1 1301 1172 2283 125 38 27 chr12 104951610 104951977 -39330512 - THE1C LTR MaLR 0 375 5 8569 112 18 24 chr12 104951977 104952813 -39329676 - HSMAR2 DNA Mariner -130 1172 343 2473 69 0 19 chr12 104952813 104953130 -39329359 - AluY SINE Alu 0 311 1 8569 112 18 24 chr12 104953130 104953471 -39329018 - HSMAR2 DNA Mariner -959 343 1 2027 181 87 42 chr12 104953474 104953955 -39328534 + MLT1D LTR MaLR 1 503 -2 476 217 0 0 chr12 104954177 104954269 -39328220 + MIR SINE MIR 74 165 -97 3134 140 121 0 chr12 104955262 104955840 -39326649 - L1PB4 LINE L1 -2 6154 5507 206 219 37 98 chr12 104955893 104955975 -39326514 - L2 LINE L2 -5 3308 3232 2276 129 16 19 chr12 104956229 104956594 -39325895 + THE1B LTR MaLR 1 364 0 10855 110 4 5 chr12 104956612 104958183 -39324306 + THE1B-int LTR MaLR 12 1580 0 2210 129 25 25 chr12 104958183 104958547 -39323942 + THE1B LTR MaLR 1 364 0 437 296 22 15 chr12 104958550 104958685 -39323804 - L2 LINE L2 -5 3308 3173 1573 206 45 6 chr12 104958686 104959016 -39323473 - MER2 DNA MER2_type -1 343 1 349 332 85 48 chr12 104959504 104959917 -39322572 + L2 LINE L2 2337 2764 -550 433 208 120 0 chr12 104959949 104960074 -39322415 + MER103 DNA DNA 8 147 -19 456 292 214 14 chr12 104960189 104960535 -39321954 + MLT1J LTR MaLR 95 509 -2 249 354 39 84 chr12 104961175 104961508 -39320981 + L2 LINE L2 2950 3267 -5 3746 155 50 58 chr12 104962506 104963298 -39319191 + MER54B LTR ERVL 8 793 0 3525 99 27 22 chr12 104963441 104963996 -39318493 + L1PB1 LINE L1 5593 6150 -1 27 29 0 0 chr12 104963996 104964030 -39318459 + AT_rich Low_complexity Low_complexity 1 34 0 483 296 30 6 chr12 104965531 104965700 -39316789 + L2 LINE L2 3141 3313 0 458 265 192 0 chr12 104966697 104966848 -39315641 - MER5A DNA MER1_type 0 189 10 188 274 39 0 chr12 104968426 104968477 -39314012 - L2 LINE L2 -15 3298 3246 190 264 264 8 chr12 104968482 104968611 -39313878 + MIR SINE MIR 25 186 -76 432 0 0 0 chr12 104968615 104968663 -39313826 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 259 221 40 33 chr12 104968706 104968798 -39313691 - MIR SINE MIR -63 145 96 193 290 86 43 chr12 104969469 104969562 -39312927 - L2 LINE L2 -2 3270 3174 628 299 41 27 chr12 104969730 104969901 -39312588 + MIR SINE MIR 23 199 -63 1750 184 0 10 chr12 104969901 104970194 -39312295 + AluJo SINE Alu 1 290 -22 628 299 41 27 chr12 104970194 104970243 -39312246 + MIR SINE MIR 199 246 -16 510 324 49 13 chr12 104970431 104970656 -39311833 + MIR SINE MIR 1 233 -29 252 0 0 0 chr12 104971246 104971274 -39311215 + (A)n Simple_repeat Simple_repeat 1 28 0 385 218 26 26 chr12 104972640 104972796 -39309693 + (CATATA)n Simple_repeat Simple_repeat 1 156 0 1435 46 0 0 chr12 104972887 104973061 -39309428 - L1PA5 LINE L1 -2 6152 5979 1776 160 21 25 chr12 104974019 104974039 -39308450 - MLT1B LTR MaLR 0 467 448 1895 155 41 22 chr12 104974039 104974407 -39308082 + THE1C LTR MaLR 1 375 0 1776 160 21 25 chr12 104974407 104974777 -39307712 - MLT1B LTR MaLR -19 448 1 229 370 20 0 chr12 104975080 104975180 -39307309 + L2 LINE L2 3134 3235 -37 2058 138 0 0 chr12 104975829 104976118 -39306371 + AluSx SINE Alu 1 289 -23 800 352 82 16 chr12 104976852 104977281 -39305208 - L3 LINE CR1 -13 1564 1108 272 235 0 0 chr12 104977279 104977330 -39305159 - L2 LINE L2 0 3313 3263 * 212 242 113 0 chr12 104977331 104977393 -39305096 - L3 LINE CR1 -453 1124 1056 202 319 0 14 chr12 104977461 104977530 -39304959 - L3 LINE CR1 -542 1035 968 367 302 177 43 chr12 104977577 104977905 -39304584 - MLT1J2 LTR MaLR -34 416 45 575 346 111 31 chr12 104977948 104978364 -39304125 - L3 LINE CR1 -603 974 526 219 203 0 0 chr12 104978371 104978430 -39304059 + (TA)n Simple_repeat Simple_repeat 1 59 0 245 278 219 5 chr12 104978499 104978686 -39303803 - MIR SINE MIR -9 253 27 694 314 152 44 chr12 104978919 104979968 -39302521 + L2 LINE L2 1968 3232 -40 943 137 0 0 chr12 104979968 104980099 -39302390 - AluJb SINE Alu -13 299 169 728 216 26 0 chr12 104981086 104981239 -39301250 - MER5A DNA MER1_type -1 188 32 498 264 109 32 chr12 104981302 104981478 -39301011 - MIR SINE MIR -21 241 43 1479 191 46 11 chr12 104981478 104981761 -39300728 - AluJb SINE Alu -19 293 1 498 264 109 32 chr12 104981761 104981804 -39300685 - MIR SINE MIR -219 43 5 595 200 214 24 chr12 104982395 104982605 -39299884 + MIR SINE MIR 13 262 0 252 154 0 0 chr12 104982796 104982848 -39299641 + A-rich Low_complexity Low_complexity 1 52 0 561 290 54 13 chr12 104985779 104986003 -39296486 + MIR SINE MIR 25 257 -5 853 199 128 74 chr12 104986106 104986586 -39295903 + MLT1E3 LTR MaLR 1 611 -13 396 292 22 15 chr12 104986614 104986751 -39295738 + L2 LINE L2 2898 3035 -237 623 279 22 22 chr12 104986935 104987118 -39295371 - MIR SINE MIR -61 201 19 1336 207 96 76 chr12 104987278 104987567 -39294922 - MLT1C LTR MaLR 0 467 164 2268 93 0 10 chr12 104987567 104987867 -39294622 + AluSc SINE Alu 1 297 -12 1336 207 96 76 chr12 104987867 104988035 -39294454 - MLT1C LTR MaLR -303 164 1 1253 198 123 57 chr12 104988781 104989186 -39293303 + MSTB1 LTR MaLR 1 432 0 534 231 126 21 chr12 104990232 104990470 -39292019 + MER102a DNA MER1_type 68 330 0 9386 123 26 5 chr12 104990926 104992441 -39290048 - Tigger1 DNA MER2_type 0 2418 872 505 111 0 0 chr12 104992441 104992513 -39289976 - AluSg/x SINE Alu -21 288 217 1051 112 51 17 chr12 104992513 104992691 -39289798 + Tigger1 DNA MER2_type 1208 1391 -1027 1639 127 72 0 chr12 104992714 104992951 -39289538 - AluSx SINE Alu -58 254 1 5498 134 10 1 chr12 104992953 104993823 -39288666 - Tigger1 DNA MER2_type -1540 878 1 2451 58 0 0 chr12 104993823 104994115 -39288374 + AluY SINE Alu 1 292 -19 21 0 0 0 chr12 104994757 104994778 -39287711 + AT_rich Low_complexity Low_complexity 1 21 0 190 268 54 36 chr12 104994849 104994905 -39287584 - L2 LINE L2 -15 3257 3201 321 264 188 0 chr12 104995023 104995167 -39287322 - MLT1H LTR MaLR 0 549 379 2681 102 5 10 chr12 104995442 104995844 -39286645 + THE1C-int LTR MaLR 1181 1580 0 1926 152 52 19 chr12 104995844 104996207 -39286282 + THE1C LTR MaLR 1 375 0 381 372 84 22 chr12 104996382 104996750 -39285739 - L2 LINE L2 -632 2682 2292 252 156 109 31 chr12 104996810 104996874 -39285615 + MIR SINE MIR 20 88 -174 3439 161 48 3 chr12 104998578 104999155 -39283334 - MER77 LTR ERV1 -2 603 1 322 275 25 42 chr12 105000615 105000735 -39281754 - L2 LINE L2 -92 3221 3104 595 140 10 0 chr12 105001289 105001389 -39281100 + L1MA3 LINE L1 6199 6299 -6 354 238 0 0 chr12 105001637 105001700 -39280789 - L2 LINE L2 -3 3310 3248 229 268 0 0 chr12 105002073 105002129 -39280360 + MIR SINE MIR 37 92 -170 656 376 60 11 chr12 105002260 105002725 -39279764 - MLT1K LTR MaLR -63 525 38 410 309 163 49 chr12 105003314 105003471 -39279018 + L2 LINE L2 1694 1832 -1482 1762 164 42 89 chr12 105003471 105003922 -39278567 + MSTB1 LTR MaLR 1 430 -2 410 309 163 49 chr12 105003922 105004278 -39278211 + L2 LINE L2 1832 2266 -1048 510 346 80 28 chr12 105004305 105004704 -39277785 - L2 LINE L2 -1150 2164 1745 2208 108 0 25 chr12 105005206 105005522 -39276967 - AluSc SINE Alu -1 308 1 621 229 0 28 chr12 105005844 105005988 -39276501 - L2 LINE L2 -6 3307 3168 198 255 21 0 chr12 105006101 105006148 -39276341 - L2 LINE L2 -81 3232 3185 339 297 62 73 chr12 105007082 105007274 -39275215 - MIR SINE MIR -53 209 20 281 288 42 0 chr12 105007365 105007483 -39275006 - LTR67 LTR ERVL 0 557 435 235 143 107 36 chr12 105007657 105007713 -39274776 - MLT1J2 LTR MaLR -327 123 64 186 322 0 0 chr12 105008432 105008491 -39273998 - L2 LINE L2 -218 3054 2996 183 42 0 0 chr12 105008864 105008888 -39273601 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 2096 106 13 30 chr12 105009171 105009472 -39273017 + AluSc SINE Alu 1 296 -13 23 0 0 0 chr12 105009497 105009520 -39272969 + AT_rich Low_complexity Low_complexity 1 23 0 788 296 195 30 chr12 105009936 105010397 -39272092 - L2 LINE L2 -1 3271 2735 1211 212 15 93 chr12 105010403 105010800 -39271689 - MLT1A2 LTR MaLR -8 366 1 197 310 26 78 chr12 105010800 105010916 -39271573 - L2 LINE L2 -573 2741 2632 1380 217 59 7 chr12 105011295 105011805 -39270684 - MLT1E3 LTR MaLR 0 624 40 240 59 0 0 chr12 105011945 105011979 -39270510 + (A)n Simple_repeat Simple_repeat 1 34 0 1577 167 86 30 chr12 105012316 105012497 -39269992 + Charlie1 DNA MER1_type 2343 2512 -249 1294 248 21 47 chr12 105012497 105012920 -39269569 - MER92A LTR ERV1 0 412 1 1577 167 86 30 chr12 105012920 105013133 -39269356 + Charlie1 DNA MER1_type 2512 2759 -2 365 373 59 18 chr12 105013166 105013335 -39269154 - MIR3 SINE MIR -17 191 16 390 91 0 0 chr12 105013542 105013597 -39268892 + (GGGA)n Simple_repeat Simple_repeat 1 55 0 281 105 0 0 chr12 105014162 105014200 -39268289 + tRNA-Lys-AAG tRNA tRNA 1 38 -38 579 308 95 60 chr12 105014575 105014649 -39267840 + L2 LINE L2 2527 2597 -716 819 281 89 78 chr12 105014649 105015165 -39267324 - LTR33A LTR ERVL -1 522 1 579 308 95 60 chr12 105015165 105015830 -39266659 + L2 LINE L2 2597 3293 -20 225 65 0 0 chr12 105016322 105016353 -39266136 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 184 305 85 28 chr12 105017193 105017334 -39265155 - L2 LINE L2 -4 3309 3161 253 305 164 34 chr12 105018181 105018358 -39264131 - L2 LINE L2 -188 3084 2885 2385 88 0 7 chr12 105018687 105018994 -39263495 + AluSq SINE Alu 1 305 -8 22 0 0 0 chr12 105019456 105019478 -39263011 + AT_rich Low_complexity Low_complexity 1 22 0 402 287 85 10 chr12 105020429 105020613 -39261876 - MLT1J2 LTR MaLR 0 427 264 358 302 25 31 chr12 105020657 105020816 -39261673 - MLT1J1 LTR MaLR -288 158 1 271 302 129 45 chr12 105020816 105021018 -39261471 - L2 LINE L2 -994 2320 2102 230 336 138 0 chr12 105021346 105021462 -39261027 + MIR SINE MIR 19 150 -58 671 241 19 31 chr12 105021490 105021700 -39260789 - MIR SINE MIR -11 251 48 242 329 12 0 chr12 105022633 105022718 -39259771 + L2 LINE L2 3222 3307 -6 249 307 31 39 chr12 105022745 105022872 -39259617 - L2 LINE L2 -61 3252 3127 299 236 8 57 chr12 105023419 105023542 -39258947 - LTR33A LTR ERVL -3 520 404 1707 218 112 108 chr12 105025356 105026167 -39256322 - MER21B LTR ERV1 -49 814 1 1826 175 45 13 chr12 105026425 105026803 -39255686 + MLT1B LTR MaLR 1 390 0 262 367 47 8 chr12 105027120 105027248 -39255241 - L2 LINE L2 -1 3271 3139 220 220 9 73 chr12 105028774 105028883 -39253606 + T-rich Low_complexity Low_complexity 2 103 0 260 239 43 22 chr12 105030323 105030415 -39252074 + L1MEc LINE L1 -65 28 -6233 330 297 93 34 chr12 105030427 105030545 -39251944 + L1MEc LINE L1 120 244 -6017 733 288 37 39 chr12 105030853 105031565 -39250924 + L1MEc LINE L1 520 1079 -5003 192 97 0 0 chr12 105031623 105031654 -39250835 + (TTTTTA)n Simple_repeat Simple_repeat 3 33 0 21 71 0 0 chr12 105032307 105032349 -39250140 + AT_rich Low_complexity Low_complexity 1 42 0 433 294 119 16 chr12 105032727 105032853 -39249636 + L2 LINE L2 3134 3272 0 1201 204 48 70 chr12 105033046 105033419 -39249070 + MLT1A1 LTR MaLR 1 365 0 576 278 24 6 chr12 105035757 105035926 -39246563 - MIR3 SINE MIR -6 202 31 977 189 9 8 chr12 105035988 105036215 -39246274 + AluJb SINE Alu 1 310 -2 247 342 20 20 chr12 105036284 105036433 -39246056 + MIR SINE MIR 110 258 -4 210 219 0 0 chr12 105036518 105036559 -39245930 + (CA)n Simple_repeat Simple_repeat 2 42 0 577 246 8 0 chr12 105036959 105037089 -39245400 + MER94 DNA DNA 1 131 -3 1059 271 85 46 chr12 105037100 105037639 -39244850 - MLT1K LTR MaLR -27 561 2 503 297 20 0 chr12 105037664 105037812 -39244677 - MIR SINE MIR -1 261 111 704 221 162 17 chr12 105037823 105038259 -39244230 + MER34 LTR ERV1 12 542 0 381 263 11 11 chr12 105038261 105038356 -39244133 - MIR SINE MIR -150 112 18 2262 153 38 18 chr12 105038604 105039027 -39243462 + MSTB1 LTR MaLR 1 365 0 198 0 0 0 chr12 105039054 105039076 -39243413 + (A)n Simple_repeat Simple_repeat 1 22 0 661 328 29 12 chr12 105040014 105040258 -39242231 + MIR SINE MIR 15 262 0 1570 236 58 18 chr12 105040931 105041376 -39241113 - MLT1C LTR MaLR 0 467 5 332 275 55 37 chr12 105042528 105042637 -39239852 - L2 LINE L2 -8 3264 3154 496 192 24 108 chr12 105043239 105043378 -39239111 + MER5B DNA MER1_type 7 131 -47 2155 137 10 0 chr12 105043378 105043684 -39238805 + AluSx SINE Alu 1 309 -3 496 192 24 108 chr12 105043684 105043711 -39238778 + MER5B DNA MER1_type 131 159 -19 252 268 0 49 chr12 105043731 105043813 -39238676 + MER5A DNA MER1_type 10 87 -102 224 259 37 0 chr12 105043889 105043970 -39238519 - MER5A DNA MER1_type -99 90 7 * 643 277 28 0 chr12 105043960 105044101 -39238388 + MER5A DNA MER1_type 45 189 0 503 268 12 54 chr12 105044796 105044957 -39237532 + MIR SINE MIR 6 165 -68 723 211 80 6 chr12 105045069 105045244 -39237245 - MIR SINE MIR -38 224 37 1045 218 4 12 chr12 105045531 105045779 -39236710 + L1MB4 LINE L1 5935 6180 0 820 262 79 18 chr12 105046865 105047094 -39235395 - MIR SINE MIR -7 255 13 305 353 29 22 chr12 105047123 105047259 -39235230 - MIR SINE MIR -95 167 31 506 191 45 0 chr12 105047427 105047544 -39234945 + MLT1J2 LTR MaLR 16 139 -308 351 290 71 13 chr12 105047732 105047887 -39234602 + MLT1J2 LTR MaLR 287 450 0 533 204 153 7 chr12 105048055 105048192 -39234297 - L2 LINE L2 -537 2777 2621 515 219 84 14 chr12 105050618 105050833 -39231656 - LTR16C LTR ERVL -2 489 260 2497 50 10 0 chr12 105053027 105053328 -39229161 - AluY SINE Alu -7 304 1 328 354 60 52 chr12 105053420 105053979 -39228510 - L2 LINE L2 -37 3235 2634 210 316 149 18 chr12 105054735 105054849 -39227640 - MIR3 SINE MIR -78 130 2 365 341 21 38 chr12 105055460 105055674 -39226815 - MIR3 SINE MIR -27 181 7 624 255 189 10 chr12 105055859 105056055 -39226434 + MIR SINE MIR 20 250 -12 1874 171 0 7 chr12 105057210 105057520 -39224969 - AluSg SINE Alu 0 310 1 2136 122 7 7 chr12 105057811 105058114 -39224375 - AluSx SINE Alu -9 303 1 2311 94 7 0 chr12 105058124 105058423 -39224066 - AluSq SINE Alu -12 301 1 301 253 81 0 chr12 105060476 105060563 -39221926 + MIR SINE MIR 91 184 -78 5189 62 8 0 chr12 105060608 105061219 -39221270 - L1PA6 LINE L1 -11 6143 5528 448 286 205 27 chr12 105061499 105061758 -39220731 + L3 LINE CR1 1262 1566 -11 225 0 0 0 chr12 105061786 105061811 -39220678 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 818 296 68 3 chr12 105062529 105062850 -39219639 + MLT1J LTR MaLR 3 344 -167 788 245 62 0 chr12 105062850 105063109 -39219380 + L2 LINE L2 2776 3055 -258 32458 109 16 57 chr12 105063121 105068701 -39213788 + L1PA7 LINE L1 12 5271 -883 300 27 0 0 chr12 105068701 105068738 -39213751 + (CA)n Simple_repeat Simple_repeat 2 38 0 32458 109 16 57 chr12 105068738 105069587 -39212902 + L1PA7 LINE L1 5271 6154 0 1020 88 15 0 chr12 105069822 105069958 -39212531 - AluSg/x SINE Alu -8 304 167 596 165 9 0 chr12 105071018 105071133 -39211356 + GA-rich Low_complexity Low_complexity 2 117 0 258 193 0 0 chr12 105072266 105072323 -39210166 + A-rich Low_complexity Low_complexity 1 57 0 294 185 0 0 chr12 105072527 105072581 -39209908 + C-rich Low_complexity Low_complexity 1 54 0 232 193 15 76 chr12 105072588 105072785 -39209704 + A-rich Low_complexity Low_complexity 1 185 0 245 263 20 10 chr12 105073269 105073368 -39209121 + (CGGGG)n Simple_repeat Simple_repeat 4 103 0 29 0 0 0 chr12 105073788 105073817 -39208672 + GC_rich Low_complexity Low_complexity 1 29 0 405 296 113 80 chr12 105073910 105074522 -39207967 - L1M2 LINE L1 -5612 1237 606 2143 111 0 0 chr12 105076144 105076423 -39206066 - AluSx SINE Alu -33 279 1 234 0 0 0 chr12 105076749 105076775 -39205714 + (T)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr12 105077018 105077045 -39205444 + AT_rich Low_complexity Low_complexity 1 27 0 693 95 16 24 chr12 105077377 105077503 -39204986 + (GAAA)n Simple_repeat Simple_repeat 4 128 0 592 283 6 6 chr12 105077610 105077769 -39204720 + MIR SINE MIR 46 204 -58 2055 125 20 10 chr12 105077770 105078073 -39204416 + AluSx SINE Alu 1 306 -6 189 0 0 0 chr12 105078348 105078369 -39204120 + (T)n Simple_repeat Simple_repeat 1 21 0 722 261 61 0 chr12 105078522 105078687 -39203802 - MER96 DNA MER1_type 0 175 1 200 206 0 0 chr12 105079505 105079539 -39202950 - L2 LINE L2 -14 3258 3225 186 222 0 0 chr12 105079509 105079545 -39202944 - MIR SINE MIR -12 250 215 * 3224 122 27 101 chr12 105079624 105080287 -39202202 - LTR18B LTR ERVL 0 614 1 768 294 124 42 chr12 105080381 105080881 -39201608 + MLT1K LTR MaLR 2 542 -46 897 265 59 43 chr12 105082465 105082838 -39199651 + L1MC4a LINE L1 5520 5898 -1910 3053 247 98 52 chr12 105082944 105084564 -39197925 + L2 LINE L2 1594 3303 -10 1753 178 0 38 chr12 105084565 105084879 -39197610 + AluJb SINE Alu 1 302 -10 207 0 0 0 chr12 105084893 105084916 -39197573 + (TA)n Simple_repeat Simple_repeat 2 24 0 269 229 57 143 chr12 105084949 105085159 -39197330 - MIR SINE MIR -5 257 66 1972 110 10 23 chr12 105085289 105085597 -39196892 - AluSg SINE Alu -6 304 1 1394 290 83 22 chr12 105086302 105086708 -39195781 + LTR16C LTR ERVL 5 444 -47 3406 109 51 29 chr12 105086708 105087257 -39195232 + MER34B LTR ERV1 5 565 0 1394 290 83 22 chr12 105087257 105087309 -39195180 + LTR16C LTR ERVL 444 491 0 1069 256 140 28 chr12 105087353 105087782 -39194707 - L2 LINE L2 0 3313 2837 200 260 0 0 chr12 105087955 105088005 -39194484 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 435 312 38 42 chr12 105088071 105088254 -39194235 - MIR SINE MIR -58 150 2 706 176 209 55 chr12 105088370 105088552 -39193937 + MER63A DNA MER1_type 1 210 0 405 102 0 0 chr12 105088727 105088786 -39193703 + (CA)n Simple_repeat Simple_repeat 1 59 0 188 263 141 10 chr12 105090515 105090614 -39191875 - L3b LINE CR1 -185 1398 1287 213 290 83 78 chr12 105090737 105090930 -39191559 + L2 LINE L2 2812 3005 -267 353 100 0 17 chr12 105091026 105091086 -39191403 + (TTGG)n Simple_repeat Simple_repeat 2 60 0 2074 162 138 85 chr12 105091402 105091443 -39191046 - MLT2B1 LTR ERVL 0 520 483 330 26 0 0 chr12 105091443 105091482 -39191007 + (TG)n Simple_repeat Simple_repeat 2 40 0 2074 162 138 85 chr12 105091482 105091934 -39190555 - MLT2B1 LTR ERVL -37 483 1 587 244 25 15 chr12 105091965 105092129 -39190360 - MIR SINE MIR -62 146 8 264 211 0 0 chr12 105093230 105093282 -39189207 + L2 LINE L2 3262 3313 0 577 279 100 35 chr12 105094103 105094232 -39188257 - MIR SINE MIR -1 261 142 2401 128 19 30 chr12 105094232 105094600 -39187889 + THE1B LTR MaLR 1 364 0 577 279 100 35 chr12 105094600 105094699 -39187790 - MIR SINE MIR -120 142 18 231 295 288 0 chr12 105094791 105094930 -39187559 + MIR SINE MIR 47 225 -37 270 216 0 0 chr12 105095128 105095179 -39187310 - L1MC4 LINE L1 -1337 6705 6655 1682 206 3 10 chr12 105095685 105095986 -39186503 - AluJo SINE Alu -13 299 1 294 328 86 35 chr12 105096815 105096989 -39185500 - L2 LINE L2 -15 3257 3075 265 330 64 0 chr12 105097858 105097952 -39184537 - L2 LINE L2 -191 3081 2982 1046 291 80 66 chr12 105098250 105099009 -39183480 + L1MC/D LINE L1 3693 4440 -2009 2038 129 7 3 chr12 105099009 105099304 -39183185 + AluSx SINE Alu 1 296 -16 1046 291 80 66 chr12 105099304 105100524 -39181965 + L1MC/D LINE L1 4440 5700 -749 1939 225 87 104 chr12 105100526 105100941 -39181548 + Zaphod DNA AcHobo 1 422 -3609 2271 106 0 0 chr12 105100941 105101225 -39181264 - AluSx SINE Alu -28 284 1 1939 225 87 104 chr12 105101225 105101622 -39180867 + Zaphod DNA AcHobo 422 824 -3207 2368 102 0 0 chr12 105101622 105101925 -39180564 - AluSx SINE Alu -9 303 1 1939 225 87 104 chr12 105101925 105102078 -39180411 + Zaphod DNA AcHobo 824 952 -3079 1763 175 0 48 chr12 105102078 105102392 -39180097 - AluJb SINE Alu -6 306 8 1939 225 87 104 chr12 105102392 105102411 -39180078 + Zaphod DNA AcHobo 952 970 -3061 1462 215 72 26 chr12 105102423 105102841 -39179648 + Zaphod DNA AcHobo 3595 4031 0 1886 196 11 32 chr12 105102928 105103301 -39179188 - MLT1A1 LTR MaLR 0 365 1 200 239 42 42 chr12 105103415 105103486 -39179003 + L2 LINE L2 3237 3307 -6 180 0 0 0 chr12 105103487 105103507 -39178982 + (CAAT)n Simple_repeat Simple_repeat 4 23 0 2130 129 0 13 chr12 105103525 105103836 -39178653 + AluSx SINE Alu 6 312 0 207 217 0 0 chr12 105105735 105105795 -39176694 + (TG)n Simple_repeat Simple_repeat 1 60 0 246 317 114 35 chr12 105107357 105107559 -39174930 - L2 LINE L2 -638 2676 2459 1347 204 108 29 chr12 105109495 105109839 -39172650 + MLT1A2 LTR MaLR 4 374 0 189 0 0 0 chr12 105110002 105110023 -39172466 + (A)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr12 105110051 105110079 -39172410 + AT_rich Low_complexity Low_complexity 1 28 0 1549 167 85 40 chr12 105110452 105110805 -39171684 - MLT1A2 LTR MaLR 0 374 6 231 267 58 35 chr12 105111319 105111405 -39171084 + L2 LINE L2 3208 3295 -18 185 231 62 62 chr12 105112058 105112123 -39170366 + L3 LINE CR1 684 748 -829 923 219 84 138 chr12 105112509 105113558 -39168931 + L1MC5 LINE L1 6834 7825 -136 797 242 130 45 chr12 105114201 105114710 -39167779 + L1ME LINE L1 5267 5818 -303 22 0 0 0 chr12 105115583 105115605 -39166884 + AT_rich Low_complexity Low_complexity 1 22 0 245 306 67 100 chr12 105115725 105115905 -39166584 - L2 LINE L2 0 3272 3099 498 199 22 44 chr12 105116056 105116192 -39166297 + MER103 DNA DNA 32 164 -2 360 276 11 23 chr12 105116314 105116401 -39166088 + L2 LINE L2 3169 3254 -18 355 291 47 16 chr12 105116478 105116605 -39165884 - MIR SINE MIR -62 146 16 364 267 217 22 chr12 105117335 105117515 -39164974 + MIR SINE MIR 32 246 -16 2927 6 0 0 chr12 105117628 105117944 -39164545 - AluYb8 SINE Alu -2 316 1 1908 92 11 4 chr12 105119130 105119391 -39163098 - AluSq SINE Alu -11 302 40 2146 107 10 0 chr12 105119597 105119887 -39162602 - AluSp SINE Alu -20 293 1 183 296 0 0 chr12 105119958 105120012 -39162477 - L3 LINE CR1 -7 1570 1517 2216 89 0 0 chr12 105120380 105120660 -39161829 + AluY SINE Alu 20 299 -12 489 313 55 0 chr12 105122154 105122317 -39160172 - MIR3 SINE MIR 0 208 37 195 312 98 73 chr12 105122863 105123068 -39159421 + L2 LINE L2 2828 3037 -276 1015 285 91 39 chr12 105123092 105123576 -39158913 + MLT1H LTR MaLR 26 534 -15 243 316 11 53 chr12 105123672 105123767 -39158722 + L2 LINE L2 3178 3268 -4 238 135 0 0 chr12 105124441 105124478 -39158011 + L1MB3 LINE L1 6086 6122 -61 206 304 43 0 chr12 105125203 105125272 -39157217 - MER5A DNA MER1_type -117 72 1 288 357 47 0 chr12 105125343 105125472 -39157017 + MIR SINE MIR 128 262 0 205 283 31 136 chr12 105125578 105125931 -39156558 + L2 LINE L2 2943 3258 -14 831 245 32 36 chr12 105126016 105126265 -39156224 + MIR SINE MIR 15 262 0 488 231 14 61 chr12 105126273 105126420 -39156069 + MIR SINE MIR 12 151 -111 2224 118 0 0 chr12 105128218 105128515 -39153974 + AluSx SINE Alu 1 297 -15 342 254 373 8 chr12 105128780 105128906 -39153583 + MER5A DNA MER1_type 10 181 -8 534 31 0 0 chr12 105129425 105129489 -39153000 + (TG)n Simple_repeat Simple_repeat 1 64 0 23 54 0 0 chr12 105131708 105131745 -39150744 + AT_rich Low_complexity Low_complexity 1 37 0 246 309 24 0 chr12 105131770 105131854 -39150635 - L2 LINE L2 -81 3232 3147 402 21 0 0 chr12 105132356 105132403 -39150086 + (CA)n Simple_repeat Simple_repeat 2 48 0 231 125 0 0 chr12 105132403 105132443 -39150046 + (GA)n Simple_repeat Simple_repeat 1 40 0 335 256 39 0 chr12 105132743 105132821 -39149668 + L2 LINE L2 3146 3226 -46 648 276 109 100 chr12 105132957 105133114 -39149375 - MLT1L LTR MaLR -42 573 419 2380 104 0 0 chr12 105133114 105133423 -39149066 - AluY SINE Alu -2 309 1 648 276 109 100 chr12 105133423 105133833 -39148656 - MLT1L LTR MaLR -196 419 1 13442 173 37 41 chr12 105133934 105135283 -39147206 + L1MA4 LINE L1 1 1354 -5128 2440 80 0 0 chr12 105135283 105135582 -39146907 - AluY SINE Alu -12 299 1 13442 173 37 41 chr12 105135582 105138098 -39144391 + L1MA4 LINE L1 1354 3879 -2603 507 100 44 22 chr12 105138098 105138185 -39144304 + L1PA11 LINE L1 6082 6173 -1 308 34 51 0 chr12 105138186 105138245 -39144244 + Charlie5 DNA MER1_type 2477 2538 -74 13442 173 37 41 chr12 105138245 105140363 -39142126 + L1MA4 LINE L1 3879 5970 -512 2278 120 0 0 chr12 105140363 105140672 -39141817 + AluSx SINE Alu 1 309 -3 13442 173 37 41 chr12 105140672 105141177 -39141312 + L1MA4 LINE L1 5970 6476 -6 2257 110 3 0 chr12 105141458 105141757 -39140732 - AluSc SINE Alu -9 300 1 207 305 37 0 chr12 105142490 105142572 -39139917 - MIR3 SINE MIR -7 201 117 679 306 76 21 chr12 105142578 105142999 -39139490 + HAL1 LINE L1 3 446 -2061 398 308 210 0 chr12 105143111 105143306 -39139183 - MIR SINE MIR -13 249 14 1614 236 104 40 chr12 105143438 105143938 -39138551 + HAL1 LINE L1 757 1326 -1181 1407 186 128 7 chr12 105143938 105144036 -39138453 + AluJb SINE Alu 1 86 -226 201 94 0 0 chr12 105144036 105144068 -39138421 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1407 186 128 7 chr12 105144068 105144243 -39138246 + AluJb SINE Alu 86 307 -5 1614 236 104 40 chr12 105144243 105144519 -39137970 + HAL1 LINE L1 1326 1583 -924 275 0 29 0 chr12 105144797 105144832 -39137657 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 2063 102 7 4 chr12 105144835 105145109 -39137380 - AluSx SINE Alu -37 275 1 2520 232 31 7 chr12 105145169 105145780 -39136709 - MLT1E2 LTR MaLR 0 626 1 326 235 47 0 chr12 105145900 105145985 -39136504 - L2 LINE L2 -8 3264 3176 7019 2 0 0 chr12 105146000 105146813 -39135676 + L1HS LINE L1 5343 6155 0 1749 70 0 0 chr12 105147130 105147344 -39135145 + AluY SINE Alu 1 214 -97 223 371 46 40 chr12 105147493 105147644 -39134845 - MIR SINE MIR -85 177 26 389 296 218 47 chr12 105149243 105149272 -39133217 - L2 LINE L2 0 3313 3290 1734 195 14 11 chr12 105149272 105149631 -39132858 + MLT1A1 LTR MaLR 5 364 -1 389 296 218 47 chr12 105149631 105149918 -39132571 - L2 LINE L2 -23 3290 2943 1980 128 31 55 chr12 105150408 105150792 -39131697 - THE1C LTR MaLR 0 375 1 997 269 96 47 chr12 105151541 105151969 -39130520 - MLT1J2 LTR MaLR 0 450 2 431 262 16 16 chr12 105153268 105153390 -39129099 - MIR SINE MIR -116 146 25 266 318 27 55 chr12 105154550 105154770 -39127719 + L1MEd LINE L1 511 724 -5395 1932 152 11 14 chr12 105154995 105155343 -39127146 + MLT1A1 LTR MaLR 19 365 0 480 306 87 24 chr12 105155349 105155952 -39126537 + L1MEd LINE L1 932 1465 -4666 840 292 46 33 chr12 105157320 105157710 -39124779 - MLT1I LTR MaLR 0 409 15 517 245 46 0 chr12 105158879 105159030 -39123459 + MER103 DNA DNA 7 164 -2 319 219 61 117 chr12 105159784 105159980 -39122509 + L2 LINE L2 3030 3214 -99 1169 242 69 38 chr12 105160355 105160915 -39121574 + L2 LINE L2 2626 3193 -120 228 67 0 0 chr12 105160916 105160946 -39121543 + (TTA)n Simple_repeat Simple_repeat 2 31 0 865 164 0 0 chr12 105160948 105161082 -39121407 - FRAM SINE Alu -30 146 13 465 277 0 18 chr12 105161119 105161231 -39121258 + L2 LINE L2 3203 3312 -1 400 308 126 7 chr12 105161232 105161375 -39121114 + MIR SINE MIR 13 172 -90 329 274 54 43 chr12 105162290 105162476 -39120013 - MLT1J LTR MaLR -299 212 25 2264 101 3 16 chr12 105162779 105163087 -39119402 + AluSx SINE Alu 1 304 -8 244 284 95 0 chr12 105166245 105166319 -39116170 - L2 LINE L2 -2 3311 3231 434 229 83 0 chr12 105166345 105166454 -39116035 + MER94 DNA DNA 4 121 -13 439 296 106 25 chr12 105166714 105166913 -39115576 - MIR SINE MIR -11 251 37 214 282 120 60 chr12 105168730 105168847 -39113642 + L2 LINE L2 3143 3266 -6 426 345 105 42 chr12 105168912 105169294 -39113195 - L2 LINE L2 -3 3269 2864 409 248 22 7 chr12 105169902 105170039 -39112450 + L1ME2 LINE L1 5546 5684 -437 429 245 11 0 chr12 105170095 105170189 -39112300 + MER63A DNA MER1_type 90 184 -26 324 0 0 0 chr12 105170239 105170275 -39112214 + (CA)n Simple_repeat Simple_repeat 1 36 0 233 226 32 0 chr12 105170275 105170337 -39112152 - MLT1J LTR MaLR -324 187 124 292 157 0 0 chr12 105172678 105172729 -39109760 + MLT2D LTR ERVL 5 55 -409 * 2167 131 81 5 chr12 105172723 105173106 -39109383 + MSTB LTR MaLR 15 426 0 1324 204 7 7 chr12 105173106 105173386 -39109103 + MLT2D LTR ERVL 87 366 -48 444 82 0 0 chr12 105173417 105173478 -39109011 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 6241 140 43 15 chr12 105173478 105174657 -39107832 - Tigger3b DNA MER2_type -3 1228 17 435 38 0 0 chr12 105174668 105174721 -39107768 + (TG)n Simple_repeat Simple_repeat 2 54 0 428 262 153 57 chr12 105176402 105176631 -39105858 + MIR SINE MIR 11 261 -1 1072 188 95 61 chr12 105176959 105177199 -39105290 + L1ME2 LINE L1 5735 5996 -168 2115 137 23 0 chr12 105177199 105177499 -39104990 + AluSg SINE Alu 1 307 -3 1072 188 95 61 chr12 105177499 105177668 -39104821 + L1ME2 LINE L1 5996 6158 -6 227 224 47 28 chr12 105178288 105178395 -39104094 + L1MC/D LINE L1 2214 2322 -3824 35269 87 12 9 chr12 105178408 105182518 -39099971 + L1PA6 LINE L1 8 4145 -2009 189 0 0 0 chr12 105182518 105182539 -39099950 + (CCCTAA)n Simple_repeat Simple_repeat 5 25 0 35269 87 12 9 chr12 105182539 105184552 -39097937 + L1PA6 LINE L1 4145 6149 -5 522 294 79 29 chr12 105184614 105185237 -39097252 + L1MC/D LINE L1 2402 3055 -3091 2007 134 3 0 chr12 105186804 105187087 -39095402 + AluSx SINE Alu 1 284 -28 1969 296 62 26 chr12 105188202 105189794 -39092695 + L1MC/D LINE L1 3073 4722 -1424 21 0 0 0 chr12 105189909 105189930 -39092559 + AT_rich Low_complexity Low_complexity 1 21 0 327 323 70 26 chr12 105189980 105190209 -39092280 + L1MC/D LINE L1 5457 5695 -475 3768 125 44 33 chr12 105190270 105190972 -39091517 - L1MA4A LINE L1 -3 6300 5591 4654 116 16 11 chr12 105190972 105191471 -39091018 - L1PA16 LINE L1 -9 6157 5645 1951 128 80 14 chr12 105191471 105191823 -39090666 + THE1C LTR MaLR 1 375 0 4654 116 16 11 chr12 105191823 105192066 -39090423 - L1PA16 LINE L1 -521 5645 5405 1315 88 10 15 chr12 105192066 105192270 -39090219 - L1MA4A LINE L1 -698 5605 5403 * 3831 214 53 7 chr12 105192266 105193138 -39089351 - L1M2 LINE L1 -5339 1510 599 2499 169 24 2 chr12 105193193 105193655 -39088834 - L1M2 LINE L1 -6376 473 2 740 175 54 12 chr12 105193840 105194006 -39088483 - LTR8 LTR ERV1 -516 175 3 1124 188 74 81 chr12 105194011 105194405 -39088084 - MER39 LTR ERV1 -57 650 260 400 259 123 12 chr12 105194601 105194721 -39087768 + MER5A DNA MER1_type 1 147 -42 324 0 0 0 chr12 105194721 105194757 -39087732 + (TG)n Simple_repeat Simple_repeat 2 37 0 400 259 123 12 chr12 105194757 105194806 -39087683 + MER5A DNA MER1_type 147 189 0 236 135 0 0 chr12 105194976 105195013 -39087476 + AluSx SINE Alu 1 37 -265 1246 106 0 0 chr12 105195013 105195174 -39087315 - AluSp SINE Alu -13 300 140 1919 84 0 0 chr12 105195476 105195715 -39086774 + AluSq SINE Alu 55 293 -20 1870 105 23 4 chr12 105195909 105196166 -39086323 + AluSx SINE Alu 40 301 -11 609 329 84 0 chr12 105196170 105196383 -39086106 - MIR SINE MIR -18 244 14 230 337 21 11 chr12 105196531 105196626 -39085863 - MIR SINE MIR -59 149 54 3880 181 44 21 chr12 105197388 105197431 -39085058 - MER21B LTR ERV1 -20 843 802 1567 153 153 26 chr12 105197431 105197811 -39084678 - MSTA LTR MaLR 0 428 1 3880 181 44 21 chr12 105197811 105198577 -39083912 - MER21B LTR ERV1 -61 802 15 2341 105 0 3 chr12 105198580 105198886 -39083603 - AluSc SINE Alu -4 305 1 1989 151 16 3 chr12 105199798 105200103 -39082386 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr12 105200119 105200140 -39082349 + AT_rich Low_complexity Low_complexity 1 21 0 1361 201 57 57 chr12 105200447 105200884 -39081605 + LTR56 LTR ERV1 9 445 0 2118 103 17 13 chr12 105200986 105201286 -39081203 + AluSg SINE Alu 1 301 -9 268 331 84 33 chr12 105201951 105202377 -39080112 - L1ME LINE L1 -296 5825 5378 243 341 71 13 chr12 105202989 105203090 -39079399 + MIR SINE MIR 43 137 -125 3182 130 54 6 chr12 105203090 105203629 -39078860 - MER34B LTR ERV1 0 565 1 243 341 71 13 chr12 105203629 105203733 -39078756 + MIR SINE MIR 137 262 0 465 314 94 8 chr12 105204229 105204474 -39078015 + MLT1J LTR MaLR 241 506 -5 450 191 113 21 chr12 105204516 105204657 -39077832 - MIR3 SINE MIR -17 191 38 232 271 0 33 chr12 105205491 105205613 -39076876 - L1ME4a LINE L1 -45 6076 5959 1987 106 15 4 chr12 105207375 105207683 -39074806 - AluSx SINE Alu 0 316 6 2087 106 18 0 chr12 105207713 105207996 -39074493 - AluSc SINE Alu -21 288 1 387 254 42 0 chr12 105208483 105208601 -39073888 - L1ME4a LINE L1 -1984 5824 5702 229 288 36 14 chr12 105208644 105208783 -39073706 + L1M4 LINE L1 4561 4702 -1444 236 250 167 12 chr12 105208893 105208977 -39073512 + MLT1L LTR MaLR 330 426 -189 326 275 7 49 chr12 105209175 105209317 -39073172 - L1ME LINE L1 -349 5772 5637 589 269 82 24 chr12 105209573 105209800 -39072689 - MIR SINE MIR 0 262 20 328 185 49 49 chr12 105210196 105210277 -39072212 + MER67D LTR ERV1 311 438 -75 433 271 27 59 chr12 105210387 105210608 -39071881 + MLT1K LTR MaLR 364 577 -11 905 225 36 55 chr12 105210679 105210932 -39071557 - MIR SINE MIR -8 254 7 896 167 0 0 chr12 105211435 105211561 -39070928 - FLAM_C SINE Alu -7 126 1 2728 177 12 22 chr12 105212383 105212764 -39069725 + MLT2B1 LTR ERVL 1 384 -136 2922 73 3 0 chr12 105212764 105213118 -39069371 - THE1A LTR MaLR 0 355 1 2728 177 12 22 chr12 105213118 105213187 -39069302 + MLT2B1 LTR ERVL 384 448 -72 3999 107 27 9 chr12 105213187 105213746 -39068743 + MER61E LTR ERV1 1 569 0 2728 177 12 22 chr12 105213746 105213790 -39068699 + MLT2B1 LTR ERVL 448 491 -29 1244 102 0 6 chr12 105213792 105213968 -39068521 - MER41B LTR ERV1 -460 175 1 1495 90 28 5 chr12 105213968 105214179 -39068310 - MER41B-int LTR ERV1 -2 5944 5729 536 111 33 22 chr12 105214175 105214265 -39068224 - MER41A-int LTR ERV1 -5855 91 1 * 1057 117 7 0 chr12 105214265 105214419 -39068070 - MER41A LTR ERV1 0 554 400 2307 92 3 0 chr12 105214633 105214926 -39067563 + AluSx SINE Alu 3 296 -16 22 0 0 0 chr12 105215186 105215208 -39067281 + AT_rich Low_complexity Low_complexity 1 22 0 402 21 0 0 chr12 105215363 105215410 -39067079 + (TTATA)n Simple_repeat Simple_repeat 3 49 0 484 148 0 23 chr12 105215574 105215662 -39066827 - L1PA16 LINE L1 -1 6165 6080 255 282 12 35 chr12 105217244 105217329 -39065160 - MIR3 SINE MIR -39 169 87 549 247 112 72 chr12 105217583 105217834 -39064655 - MIR SINE MIR 0 262 2 200 344 0 22 chr12 105217863 105217953 -39064536 - L2 LINE L2 0 3313 3226 2104 26 0 0 chr12 105218490 105218724 -39063765 + AluY SINE Alu 78 311 0 207 0 0 0 chr12 105219856 105219879 -39062610 + (A)n Simple_repeat Simple_repeat 1 23 0 1090 193 47 14 chr12 105220056 105220269 -39062220 - MER58A DNA MER1_type -4 220 1 332 292 18 83 chr12 105220780 105220948 -39061541 + MIR SINE MIR 21 177 -85 2308 103 3 3 chr12 105221812 105222124 -39060365 + AluSq SINE Alu 1 312 -1 553 138 64 0 chr12 105222135 105222229 -39060260 + MLT1A2 LTR MaLR 273 372 -2 229 161 143 0 chr12 105222237 105222293 -39060196 - L1ME LINE L1 -654 5512 5449 239 243 43 14 chr12 105222370 105222440 -39060049 - MIR SINE MIR -119 143 72 22 0 0 0 chr12 105222867 105222889 -39059600 + AT_rich Low_complexity Low_complexity 1 22 0 363 282 8 8 chr12 105223144 105223261 -39059228 + MIR SINE MIR 91 207 -55 770 297 32 20 chr12 105223346 105223595 -39058894 + MIR SINE MIR 5 256 -6 406 270 68 34 chr12 105224145 105224293 -39058196 + MIR SINE MIR 14 166 -96 1074 120 109 5 chr12 105224293 105224477 -39058012 + L1MA5A LINE L1 6092 6294 -3 24 0 0 0 chr12 105224477 105224501 -39057988 + AT_rich Low_complexity Low_complexity 1 24 0 206 284 14 14 chr12 105224504 105224578 -39057911 + MIR SINE MIR 160 233 -29 772 256 109 0 chr12 105225208 105225419 -39057070 + MIR SINE MIR 21 254 -8 344 363 0 0 chr12 105225428 105225530 -39056959 - L2 LINE L2 -21 3251 3150 937 230 47 0 chr12 105225838 105226051 -39056438 + MIR SINE MIR 40 262 0 655 75 0 0 chr12 105226093 105226173 -39056316 - MADE1 DNA Mariner 0 80 1 226 267 267 29 chr12 105226183 105226288 -39056201 - MIR SINE MIR -62 146 17 1044 157 11 11 chr12 105226785 105226976 -39055513 - L1MB3 LINE L1 0 6183 5993 210 143 0 0 chr12 105228120 105228155 -39054334 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 245 0 0 chr12 105228667 105228716 -39053773 + GA-rich Low_complexity Low_complexity 2 50 0 251 266 31 16 chr12 105228777 105228905 -39053584 + (TG)n Simple_repeat Simple_repeat 1 130 0 221 188 31 10 chr12 105228929 105229025 -39053464 + (TG)n Simple_repeat Simple_repeat 1 98 0 301 269 29 34 chr12 105229135 105229195 -39053294 + (TATG)n Simple_repeat Simple_repeat 4 63 -114 275 65 22 0 chr12 105229195 105229241 -39053248 + (TG)n Simple_repeat Simple_repeat 1 47 0 301 269 29 34 chr12 105229241 105229355 -39053134 + (TATG)n Simple_repeat Simple_repeat 63 177 0 2391 145 111 3 chr12 105231129 105231515 -39050974 - MSTA LTR MaLR 0 428 1 199 381 12 0 chr12 105233264 105233348 -39049141 + L2 LINE L2 3107 3191 -81 * 489 314 118 0 chr12 105233337 105233566 -39048923 - MIR SINE MIR -5 257 2 235 297 109 25 chr12 105233868 105234136 -39048353 + L1ME1 LINE L1 5677 5962 -204 2364 103 3 0 chr12 105234183 105234494 -39047995 + AluSq SINE Alu 1 312 -1 1271 231 0 0 chr12 105234502 105234745 -39047744 + MIR SINE MIR 20 262 0 2329 64 6 51 chr12 105234929 105235241 -39047248 - AluSp SINE Alu -15 298 1 257 271 0 0 chr12 105235460 105235508 -39046981 - L2 LINE L2 -10 3262 3215 1109 262 138 20 chr12 105236501 105236951 -39045538 - MLT1J LTR MaLR -8 503 1 376 238 69 30 chr12 105237771 105237872 -39044617 - MIR SINE MIR -106 156 52 285 275 55 37 chr12 105237906 105238015 -39044474 - L2 LINE L2 -30 3242 3132 2718 176 21 25 chr12 105238967 105239491 -39042998 - MER89 LTR ERV1 0 559 38 657 246 47 39 chr12 105239539 105239746 -39042743 + MIR SINE MIR 35 251 -11 189 0 0 0 chr12 105240066 105240087 -39042402 + (A)n Simple_repeat Simple_repeat 1 21 0 319 274 24 0 chr12 105240158 105240242 -39042247 - MIR SINE MIR -81 181 96 2158 104 7 3 chr12 105241340 105241628 -39040861 + AluSx SINE Alu 1 289 -23 669 204 8 8 chr12 105241814 105241946 -39040543 + MLT1I LTR MaLR 9 140 -269 1061 214 42 19 chr12 105242003 105242218 -39040271 + MER58A DNA MER1_type 5 224 0 471 266 35 7 chr12 105242230 105242373 -39040116 + MLT1I LTR MaLR 256 402 -7 297 321 72 62 chr12 105243841 105244131 -39038358 + L3 LINE CR1 678 970 -607 229 250 18 0 chr12 105244175 105244231 -39038258 - L2 LINE L2 0 3272 3216 415 193 45 136 chr12 105244264 105244464 -39038025 + MER58C DNA MER1_type 35 215 0 789 263 81 77 chr12 105244586 105245016 -39037473 + L3b LINE CR1 1133 1564 -19 274 208 0 19 chr12 105245047 105245100 -39037389 + MIR SINE MIR 96 147 -61 227 270 48 42 chr12 105245356 105245545 -39036944 + L1MDa LINE L1 2452 2641 -3899 1997 244 105 24 chr12 105245951 105246883 -39035606 + L2 LINE L2 2297 3309 -4 277 316 22 63 chr12 105247254 105247315 -39035174 + MIR SINE MIR 17 79 -183 645 154 245 85 chr12 105247315 105247503 -39034986 - MER20 DNA MER1_type 0 219 2 277 316 22 63 chr12 105247503 105247647 -39034842 + MIR SINE MIR 79 213 -49 414 250 97 8 chr12 105248376 105248500 -39033989 - MIR SINE MIR -108 154 20 2391 101 0 0 chr12 105248799 105249107 -39033382 + AluSq SINE Alu 1 308 -5 1364 120 76 54 chr12 105249203 105249340 -39033149 + L1MA8 LINE L1 6004 6137 -154 9554 117 10 0 chr12 105249340 105251490 -39030999 + L1PA10 LINE L1 3992 6154 -14 2156 104 3 0 chr12 105251492 105251779 -39030710 - AluSg SINE Alu -22 288 1 1364 120 76 54 chr12 105251779 105251914 -39030575 + L1MA8 LINE L1 6137 6285 -6 25 31 0 0 chr12 105251914 105251946 -39030543 + AT_rich Low_complexity Low_complexity 1 32 0 226 114 0 0 chr12 105252003 105252038 -39030451 + L1P LINE L1 4961 4995 -1151 520 307 26 31 chr12 105252045 105252237 -39030252 + MIR SINE MIR 72 262 0 515 272 103 25 chr12 105252919 105253162 -39029327 + MIR SINE MIR 1 262 0 2029 180 11 75 chr12 105253295 105253746 -39028743 + LTR9 LTR ERV1 1 422 -190 549 188 34 91 chr12 105253875 105254051 -39028438 + LTR9 LTR ERV1 458 612 0 385 250 154 0 chr12 105254129 105254233 -39028256 - L2 LINE L2 -1 3271 3152 2417 93 0 0 chr12 105254416 105254728 -39027761 + AluSx SINE Alu 1 312 0 287 241 36 72 chr12 105257528 105257611 -39024878 - L2 LINE L2 -96 3176 3097 293 184 0 0 chr12 105257679 105257728 -39024761 - L2 LINE L2 -6 3266 3218 2080 150 3 0 chr12 105257840 105258147 -39024342 + AluJb SINE Alu 1 308 -4 2528 74 0 3 chr12 105258301 105258610 -39023879 + AluSg SINE Alu 1 308 -2 276 344 72 6 chr12 105258670 105258850 -39023639 + L2 LINE L2 2873 3064 -208 287 320 64 8 chr12 105259023 105259148 -39023341 + L2 LINE L2 3141 3272 0 210 319 210 0 chr12 105259863 105259982 -39022507 + L2 LINE L2 3170 3313 0 2331 119 0 0 chr12 105260060 105260372 -39022117 - AluSx SINE Alu 0 312 1 336 271 21 0 chr12 105261756 105261864 -39020625 - MIR3 SINE MIR 0 208 97 1072 296 117 39 chr12 105261952 105262779 -39019710 + HAL1 LINE L1 684 1575 -932 2194 114 3 3 chr12 105262780 105263079 -39019410 + AluSx SINE Alu 1 299 -13 1300 123 0 0 chr12 105263082 105263253 -39019236 + AluSg/x SINE Alu 128 298 -14 731 233 133 12 chr12 105263255 105263504 -39018985 + HAL1 LINE L1 1572 1850 -657 431 274 75 127 chr12 105264042 105264431 -39018058 + MLT1L LTR MaLR 179 542 -73 2299 108 0 6 chr12 105264431 105264745 -39017744 - AluSx SINE Alu 0 312 1 431 274 75 127 chr12 105264745 105264811 -39017678 + MLT1L LTR MaLR 542 610 -5 336 252 27 9 chr12 105264937 105265048 -39017441 + L1MC/D LINE L1 5364 5476 -2332 253 254 0 0 chr12 105265587 105265620 -39016869 + (AATTG)n Simple_repeat Simple_repeat 2 34 -38 2253 86 3 7 chr12 105265620 105265912 -39016577 + AluSx SINE Alu 2 292 -20 253 254 0 0 chr12 105265912 105265949 -39016540 + (AATTG)n Simple_repeat Simple_repeat 33 72 0 2376 101 0 0 chr12 105266217 105266525 -39015964 + AluSx SINE Alu 1 308 -4 246 105 0 0 chr12 105266773 105266811 -39015678 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 311 258 62 0 chr12 105267158 105267255 -39015234 - MIR SINE MIR -68 140 38 222 37 0 0 chr12 105267888 105267915 -39014574 + (CA)n Simple_repeat Simple_repeat 2 28 0 205 282 159 29 chr12 105267974 105268144 -39014345 + L2 LINE L2 2992 3183 -89 1146 144 0 0 chr12 105268556 105268723 -39013766 + AluSg/x SINE Alu 133 299 -11 503 243 83 0 chr12 105268926 105269070 -39013419 - MIR SINE MIR -105 157 2 983 214 0 0 chr12 105269253 105269426 -39013063 - MER45A DNA AcHobo 0 178 6 180 152 0 0 chr12 105269611 105269644 -39012845 + A-rich Low_complexity Low_complexity 1 33 0 340 248 17 0 chr12 105269816 105269933 -39012556 + (CATATA)n Simple_repeat Simple_repeat 4 122 0 248 271 58 103 chr12 105271034 105271189 -39011300 + MIR SINE MIR 59 206 -56 196 328 75 0 chr12 105271294 105271361 -39011128 - MIR3 SINE MIR -30 178 107 505 297 27 0 chr12 105271491 105271639 -39010850 - MIR SINE MIR -109 153 2 180 0 0 0 chr12 105271671 105271691 -39010798 + (TC)n Simple_repeat Simple_repeat 2 21 0 581 298 31 5 chr12 105272826 105273017 -39009472 + MER117 DNA MER1_type 1 196 -1 404 301 8 16 chr12 105273741 105273864 -39008625 + L2 LINE L2 3151 3272 0 588 276 35 101 chr12 105274057 105274463 -39008026 + L2 LINE L2 2931 3309 -4 251 213 12 50 chr12 105274520 105274600 -39007889 - LTR50 LTR ERVL -2 793 717 2579 71 0 0 chr12 105274616 105274924 -39007565 - AluY SINE Alu -3 308 1 1835 167 0 3 chr12 105275496 105275783 -39006706 + AluJb SINE Alu 6 291 -21 203 275 11 66 chr12 105276092 105276183 -39006306 + L2 LINE L2 3137 3222 -50 336 344 61 8 chr12 105276327 105276458 -39006031 - L2 LINE L2 -2 3270 3133 1768 158 53 0 chr12 105276948 105277232 -39005257 + AluSx SINE Alu 1 299 -13 855 142 0 15 chr12 105277241 105277375 -39005114 + FLAM_C SINE Alu 1 132 -1 1192 181 104 26 chr12 105278088 105278458 -39004031 + MSTC LTR MaLR 1 428 0 234 354 20 0 chr12 105278756 105278855 -39003634 + MIR SINE MIR 53 153 -109 318 314 88 13 chr12 105279039 105279278 -39003211 + L2 LINE L2 3055 3311 -2 1972 168 3 0 chr12 105279650 105279960 -39002529 + AluJb SINE Alu 1 311 -1 2723 45 0 0 chr12 105281976 105282304 -39000185 - AluY SINE Alu 0 328 1 1078 179 20 5 chr12 105282781 105282977 -38999512 - LTR52 LTR ERVL -4 417 219 356 245 149 53 chr12 105283229 105283336 -38999153 + MIR SINE MIR 47 142 -120 525 228 60 24 chr12 105283336 105283503 -38998986 + MER104 DNA MER2_type 5 177 -3 356 245 149 53 chr12 105283503 105283583 -38998906 + MIR SINE MIR 142 252 -10 527 240 16 0 chr12 105283593 105283718 -38998771 + MIR SINE MIR 111 237 -25 474 281 78 10 chr12 105283835 105284027 -38998462 + MIR SINE MIR 58 262 0 1445 224 54 89 chr12 105284142 105284453 -38998036 - MER90 LTR ERV1 -2 612 326 1858 76 86 92 chr12 105284453 105284757 -38997732 + AluSg SINE Alu 1 302 -8 1445 224 54 89 chr12 105284757 105284985 -38997504 - MER90 LTR ERV1 -288 326 92 544 170 18 27 chr12 105285018 105285130 -38997359 + MER81 DNA DNA 1 111 -3 465 250 95 0 chr12 105285234 105285350 -38997139 + MIR SINE MIR 19 145 -117 941 133 7 0 chr12 105285684 105285827 -38996662 - U4 snRNA snRNA -1 144 1 314 295 21 0 chr12 105285963 105286058 -38996431 - MIR SINE MIR -92 170 74 286 191 55 45 chr12 105287306 105287368 -38995121 + AluSq SINE Alu 121 186 -117 666 246 130 52 chr12 105287368 105287698 -38994791 + LTR18A LTR ERVL 1 356 -1 286 191 55 45 chr12 105287698 105287745 -38994744 + AluSq SINE Alu 186 231 -72 5846 199 24 5 chr12 105287745 105288819 -38993670 + HERVL18 LTR ERVL 32 1126 -4921 306 203 16 0 chr12 105288854 105288918 -38993571 + LTR18B LTR ERVL 130 194 -420 16181 145 21 8 chr12 105288921 105291417 -38991072 + HERVL18 LTR ERVL 3520 6047 0 562 241 89 41 chr12 105291418 105291760 -38990729 + LTR18A LTR ERVL 1 614 0 1525 182 0 8 chr12 105291760 105292013 -38990476 + AluJo SINE Alu 41 291 -21 2226 123 0 0 chr12 105293289 105293589 -38988900 - AluSx SINE Alu -12 300 1 21 0 0 0 chr12 105293598 105293619 -38988870 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr12 105294264 105294308 -38988181 + AT_rich Low_complexity Low_complexity 1 44 0 268 325 121 54 chr12 105294461 105294849 -38987640 + MLT1K LTR MaLR 102 515 -73 3647 66 60 2 chr12 105294914 105295399 -38987090 - L1PA10 LINE L1 0 6168 5656 1776 183 0 3 chr12 105295636 105295931 -38986558 + AluJo SINE Alu 1 294 -18 2327 97 0 0 chr12 105295944 105296234 -38986255 + AluSg SINE Alu 1 290 -20 792 221 155 13 chr12 105296244 105296470 -38986019 - MIR SINE MIR 0 262 5 924 134 33 211 chr12 105296597 105297023 -38985466 - MER46B DNA MER2_type 0 236 2 2073 137 7 0 chr12 105297023 105297323 -38985166 + AluSq SINE Alu 1 302 -11 879 250 120 47 chr12 105297343 105297727 -38984762 + MLT1J1 LTR MaLR 32 443 -3 2269 114 0 0 chr12 105297887 105298185 -38984304 + AluY SINE Alu 2 299 -12 244 292 68 31 chr12 105298819 105298980 -38983509 - L1M4 LINE L1 -2662 3484 3318 2416 149 50 16 chr12 105298982 105299424 -38983065 - MSTB2 LTR MaLR 0 457 1 286 292 43 29 chr12 105299437 105299646 -38982843 - L1MC5 LINE L1 -60 7901 7690 2121 122 3 0 chr12 105299898 105300192 -38982297 + AluSx SINE Alu 1 295 -17 1786 180 3 7 chr12 105300482 105300771 -38981718 - AluJo SINE Alu -24 288 1 1993 134 3 11 chr12 105300780 105301086 -38981403 - AluSx SINE Alu 0 304 1 487 203 110 8 chr12 105301125 105301174 -38981315 + MER33 DNA MER1_type 1 36 -2549 2470 139 27 41 chr12 105301174 105301613 -38980876 + Tigger2a DNA MER2_type 1 433 -1 487 203 110 8 chr12 105301613 105301762 -38980727 + MER33 DNA MER1_type 36 230 -94 7690 169 18 10 chr12 105301762 105303657 -38978832 + L1M2 LINE L1 3665 5537 -743 526 260 0 18 chr12 105303663 105303896 -38978593 - MER90 LTR ERV1 -36 539 316 2270 126 20 48 chr12 105303900 105304049 -38978440 + Tigger2 DNA MER2_type 2334 2486 -232 2305 129 0 0 chr12 105304049 105304358 -38978131 - AluSx SINE Alu -3 309 1 2270 126 20 48 chr12 105304358 105304604 -38977885 + Tigger2 DNA MER2_type 2486 2718 0 410 266 9 137 chr12 105304712 105304945 -38977544 + L3 LINE CR1 1154 1356 -221 196 322 11 22 chr12 105305020 105305110 -38977379 + L3 LINE CR1 1483 1571 -6 1203 185 13 59 chr12 105305125 105305267 -38977222 + L1MD3 LINE L1 7705 7827 -168 2179 97 3 29 chr12 105305267 105305577 -38976912 + AluSx SINE Alu 1 302 -10 1203 185 13 59 chr12 105305577 105305737 -38976752 + L1MD3 LINE L1 7827 7993 -2 456 278 58 21 chr12 105305743 105305934 -38976555 + MIR SINE MIR 65 262 0 1741 202 3 0 chr12 105306264 105306571 -38975918 + AluJo SINE Alu 1 308 -4 2276 115 3 0 chr12 105306925 105307221 -38975268 - AluSx SINE Alu -15 297 1 213 39 0 0 chr12 105308344 105308370 -38974119 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2823 131 37 23 chr12 105308488 105308617 -38973872 + L1PB1 LINE L1 5650 5776 -375 423 0 0 0 chr12 105308617 105308664 -38973825 + (TA)n Simple_repeat Simple_repeat 2 48 0 2823 131 37 23 chr12 105308664 105308972 -38973517 + L1PB1 LINE L1 5776 6097 -54 2352 102 0 10 chr12 105308972 105309276 -38973213 + AluSq SINE Alu 1 301 -12 2823 131 37 23 chr12 105309276 105309324 -38973165 + L1PB1 LINE L1 6097 6143 -8 33 80 0 0 chr12 105309331 105309406 -38973083 + AT_rich Low_complexity Low_complexity 1 75 0 195 129 0 0 chr12 105309676 105309707 -38972782 + (A)n Simple_repeat Simple_repeat 1 31 0 2258 100 7 10 chr12 105309783 105310092 -38972397 + AluSq SINE Alu 1 308 -5 22 35 0 0 chr12 105310196 105310225 -38972264 + AT_rich Low_complexity Low_complexity 1 29 0 2206 102 6 40 chr12 105310594 105310917 -38971572 + AluSx SINE Alu 1 312 0 2018 214 52 77 chr12 105311092 105311339 -38971150 - MLT1E2 LTR MaLR -3 623 371 2327 122 0 0 chr12 105311339 105311651 -38970838 - AluSx SINE Alu 0 312 1 2018 214 52 77 chr12 105311651 105312042 -38970447 - MLT1E2 LTR MaLR -255 371 1 2101 151 3 0 chr12 105312851 105313163 -38969326 - AluSq SINE Alu 0 313 1 1888 183 110 53 chr12 105313165 105313276 -38969213 + MLT2B1 LTR ERVL 1 104 -416 2248 97 0 13 chr12 105313276 105313574 -38968915 + AluSx SINE Alu 1 294 -18 1888 183 110 53 chr12 105313574 105313954 -38968535 + MLT2B1 LTR ERVL 104 520 0 333 0 0 0 chr12 105315033 105315070 -38967419 + (CA)n Simple_repeat Simple_repeat 2 38 0 2395 112 0 0 chr12 105315518 105315822 -38966667 - AluSx SINE Alu -8 304 1 1780 108 31 52 chr12 105316580 105316886 -38965603 - AluJb SINE Alu 0 301 2 1100 110 43 18 chr12 105316898 105317062 -38965427 - AluSg/x SINE Alu -11 299 132 2483 63 0 7 chr12 105317062 105317364 -38965125 - AluY SINE Alu -11 300 1 694 242 21 36 chr12 105317471 105317665 -38964824 - LTR16A LTR ERVL -242 208 18 2331 121 0 0 chr12 105317988 105318295 -38964194 - AluSx SINE Alu -5 307 1 298 255 28 19 chr12 105318372 105318478 -38964011 - L1MC5 LINE L1 -37 7924 7818 256 282 126 60 chr12 105318610 105318857 -38963632 + L1M4 LINE L1 4180 4409 -1737 1719 172 53 0 chr12 105318857 105319142 -38963347 + AluJb SINE Alu 2 301 -11 256 282 126 60 chr12 105319142 105319496 -38962993 + L1M4 LINE L1 4409 4738 -1408 276 30 0 0 chr12 105319496 105319529 -38962960 + (TG)n Simple_repeat Simple_repeat 2 34 0 256 282 126 60 chr12 105319529 105319650 -38962839 + L1M4 LINE L1 4738 4850 -1296 2074 117 23 16 chr12 105319650 105319958 -38962531 + AluSx SINE Alu 1 310 -2 256 282 126 60 chr12 105319958 105319995 -38962494 + L1M4 LINE L1 4850 4991 -1155 1639 189 3 17 chr12 105319998 105320299 -38962190 - AluJb SINE Alu -15 297 1 416 173 0 0 chr12 105320313 105320388 -38962101 - MER116 DNA Mariner -5 75 1 2177 112 3 7 chr12 105320448 105320753 -38961736 + AluSx SINE Alu 1 304 -8 2127 108 7 3 chr12 105321620 105321925 -38960564 - AluSq SINE Alu -7 306 1 231 36 0 0 chr12 105324795 105324823 -38957666 + (CAG)n Simple_repeat Simple_repeat 1 28 0 2073 98 0 54 chr12 105325054 105325181 -38957308 + AluSq SINE Alu 1 133 -180 7752 28 5 0 chr12 105325181 105326467 -38956022 + L1PA3 LINE L1 4862 6155 0 2073 98 0 54 chr12 105326467 105326654 -38955835 + AluSq SINE Alu 133 298 -15 395 159 0 29 chr12 105326910 105326979 -38955510 - LTR40a LTR ERVL -2 517 451 2173 112 0 16 chr12 105326989 105327292 -38955197 - AluSx SINE Alu -14 298 1 327 308 134 58 chr12 105327634 105327726 -38954763 - L3 LINE CR1 -385 1192 1108 2345 86 7 3 chr12 105327726 105328028 -38954461 + AluSq SINE Alu 1 303 -10 327 308 134 58 chr12 105328028 105328211 -38954278 - L3 LINE CR1 -469 1108 896 730 253 26 5 chr12 105328222 105328412 -38954077 + MIR SINE MIR 1 194 -68 2528 55 3 0 chr12 105328437 105328730 -38953759 + AluY SINE Alu 1 294 -17 1963 145 0 23 chr12 105328742 105329046 -38953443 + AluJo SINE Alu 1 297 -15 512 286 18 23 chr12 105329106 105329277 -38953212 - MIR SINE MIR -73 189 20 1102 171 4 100 chr12 105329347 105329587 -38952902 - AluJb SINE Alu -95 217 1 2148 117 0 7 chr12 105329642 105329942 -38952547 + AluSx SINE Alu 1 298 -14 1790 163 10 26 chr12 105329948 105330255 -38952234 + AluJb SINE Alu 1 302 -10 348 302 22 43 chr12 105330255 105330394 -38952095 + MIR SINE MIR 22 157 -105 2236 105 14 0 chr12 105330399 105330693 -38951796 + AluSx SINE Alu 1 298 -14 215 333 0 0 chr12 105330802 105330871 -38951618 - L3 LINE CR1 -760 817 749 263 364 0 0 chr12 105330908 105330985 -38951504 - L3 LINE CR1 -1273 304 228 273 303 25 42 chr12 105331377 105331496 -38950993 - MIR SINE MIR -73 189 73 311 200 54 54 chr12 105331568 105331698 -38950791 + MER113 DNA MER1_type? 1 130 -391 1725 145 0 99 chr12 105331784 105332116 -38950373 + AluJb SINE Alu 1 299 -13 1054 170 102 124 chr12 105332116 105332510 -38949979 - MLT1B LTR MaLR 0 390 6 309 256 26 0 chr12 105332524 105332602 -38949887 + MER113 DNA MER1_type? 429 508 -13 961 171 25 0 chr12 105332791 105332949 -38949540 - AluSg/x SINE Alu -14 298 137 2411 97 3 0 chr12 105334272 105334583 -38947906 - AluSp SINE Alu 0 313 2 1717 193 0 10 chr12 105334587 105334888 -38947601 - AluJb SINE Alu -14 298 1 1962 138 47 3 chr12 105335016 105335313 -38947176 + AluSx SINE Alu 1 310 -2 2068 101 0 44 chr12 105335369 105335796 -38946693 + AluSx SINE Alu 1 312 0 2571 188 60 12 chr12 105335953 105336470 -38946019 + MLT1F LTR MaLR 1 542 0 2420 101 0 0 chr12 105336608 105336916 -38945573 - AluSq SINE Alu -5 308 1 560 263 69 82 chr12 105336955 105337263 -38945226 + MLT1K LTR MaLR 252 557 -31 1299 62 34 6 chr12 105337263 105337441 -38945048 + L1PA11 LINE L1 5992 6174 0 2372 76 10 3 chr12 105338445 105338749 -38943740 - AluSc SINE Alu -3 306 1 228 163 0 0 chr12 105339349 105339392 -38943097 + GA-rich Low_complexity Low_complexity 1 43 0 1655 185 6 22 chr12 105339408 105339722 -38942767 + AluJb SINE Alu 1 309 -3 1806 176 56 62 chr12 105339725 105339837 -38942652 + MLT1C LTR MaLR 6 117 -350 2252 92 14 3 chr12 105339837 105340129 -38942360 + AluSx SINE Alu 5 299 -13 1806 176 56 62 chr12 105340129 105340481 -38942008 + MLT1C LTR MaLR 117 467 0 1832 119 65 7 chr12 105340899 105341192 -38941297 + AluJb SINE Alu 1 310 -2 24 0 0 0 chr12 105341549 105341573 -38940916 + AT_rich Low_complexity Low_complexity 1 24 0 579 15 0 0 chr12 105341903 105341971 -38940518 + (CA)n Simple_repeat Simple_repeat 1 68 0 1433 154 0 0 chr12 105342026 105342253 -38940236 - AluJb SINE Alu 0 312 86 203 100 60 20 chr12 105342877 105342927 -38939562 + (TA)n Simple_repeat Simple_repeat 2 53 0 2254 124 0 0 chr12 105343059 105343357 -38939132 + AluSq SINE Alu 1 298 -15 2366 108 3 0 chr12 105343589 105343894 -38938595 + AluSx SINE Alu 1 306 -6 2055 124 54 40 chr12 105343968 105344338 -38938151 + THE1C LTR MaLR 1 375 0 216 211 0 35 chr12 105344355 105344412 -38938077 + (CA)n Simple_repeat Simple_repeat 2 56 0 731 250 17 6 chr12 105344547 105344719 -38937770 + MLT1G1 LTR MaLR 1 174 -421 993 172 0 0 chr12 105344730 105344887 -38937602 - FRAM SINE Alu -9 167 11 535 268 50 55 chr12 105345227 105345278 -38937211 - MIR SINE MIR -26 236 186 1835 166 14 0 chr12 105345278 105345568 -38936921 - AluJo SINE Alu -18 294 1 535 268 50 55 chr12 105345568 105345736 -38936753 - MIR SINE MIR -76 186 18 1748 130 142 75 chr12 105345780 105345843 -38936646 - MSTA LTR MaLR 0 428 371 1930 121 0 0 chr12 105345843 105346107 -38936382 + AluJo SINE Alu 34 297 -15 1748 130 142 75 chr12 105346107 105346444 -38936045 - MSTA LTR MaLR -57 371 1 776 297 128 53 chr12 105346461 105346876 -38935613 + LTR67 LTR ERVL 47 504 -53 2428 93 0 0 chr12 105346876 105347187 -38935302 - AluY SINE Alu 0 311 1 776 297 128 53 chr12 105347187 105347246 -38935243 + LTR67 LTR ERVL 504 557 0 383 269 146 0 chr12 105347840 105347970 -38934519 + MLT1L LTR MaLR 3 151 -464 329 250 75 0 chr12 105348098 105348178 -38934311 + MLT1L LTR MaLR 306 391 -224 185 0 0 39 chr12 105348183 105348209 -38934280 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 2173 100 0 0 chr12 105348213 105348516 -38933973 + AluSg SINE Alu 2 304 0 310 304 64 37 chr12 105348715 105348901 -38933588 - MLT2E LTR ERVL -344 177 1 441 207 11 0 chr12 105348903 105348990 -38933499 + HAL1 LINE L1 1533 1620 -887 930 198 0 12 chr12 105348994 105349161 -38933328 + FRAM SINE Alu 1 158 -18 2291 112 3 10 chr12 105349177 105349491 -38932998 + AluSx SINE Alu 1 312 0 795 264 11 67 chr12 105349497 105349766 -38932723 + HAL1 LINE L1 1637 1890 -617 742 190 115 110 chr12 105349907 105350266 -38932223 + MLT1E LTR MaLR 3 361 -265 2171 116 13 0 chr12 105350271 105350572 -38931917 + AluSq SINE Alu 1 305 -8 317 159 16 0 chr12 105350580 105350643 -38931846 + G-rich Low_complexity Low_complexity 4 67 0 1255 252 15 0 chr12 105350647 105350909 -38931580 + MLT1E LTR MaLR 328 593 0 1767 169 13 20 chr12 105351286 105351587 -38930902 + AluJb SINE Alu 1 299 -13 312 296 22 67 chr12 105351687 105351822 -38930667 + L1ME3A LINE L1 5963 6091 -79 2350 75 6 35 chr12 105351961 105352279 -38930210 + AluSq SINE Alu 1 309 -4 987 221 112 21 chr12 105352702 105352987 -38929502 + L1MC/D LINE L1 5286 5596 -2212 265 212 129 12 chr12 105353002 105353087 -38929402 + MLT1L LTR MaLR 3 97 -518 381 223 0 32 chr12 105353124 105353218 -38929271 - L2 LINE L2 -17 3296 3206 498 215 8 54 chr12 105353301 105353371 -38929118 + MER94 DNA DNA 8 71 -63 2334 92 7 3 chr12 105353371 105353675 -38928814 + AluSx SINE Alu 1 305 -7 498 215 8 54 chr12 105353675 105353734 -38928755 + MER94 DNA DNA 71 131 -3 337 289 96 96 chr12 105354232 105354523 -38927966 + MLT1L LTR MaLR 207 497 -118 2058 102 0 53 chr12 105354577 105354880 -38927609 + AluSx SINE Alu 12 298 -14 580 183 50 17 chr12 105354894 105355014 -38927475 + AluJo SINE Alu 9 132 -180 4158 140 91 66 chr12 105355098 105355500 -38926989 - MER4D LTR ERV1 -3 900 510 1803 151 0 7 chr12 105355500 105355778 -38926711 - AluJb SINE Alu -36 276 1 4158 140 91 66 chr12 105355778 105355797 -38926692 - MER4D LTR ERV1 -393 510 493 2129 89 10 31 chr12 105355797 105356130 -38926359 - AluSq SINE Alu 0 327 1 4158 140 91 66 chr12 105356130 105356584 -38925905 - MER4D LTR ERV1 -410 493 1 815 205 0 6 chr12 105356690 105356846 -38925643 + AluJo SINE Alu 137 291 -21 301 239 77 31 chr12 105357592 105357722 -38924767 - L1ME4a LINE L1 -22 6099 5964 2426 91 3 0 chr12 105357725 105358034 -38924455 - AluSx SINE Alu -2 310 1 2039 128 16 10 chr12 105358333 105358638 -38923851 + AluSg SINE Alu 1 307 -3 289 272 54 0 chr12 105359067 105359159 -38923330 + MIR3 SINE MIR 88 184 -24 421 258 39 32 chr12 105359503 105359591 -38922898 + MIR SINE MIR 103 189 -73 2339 135 155 44 chr12 105359591 105359743 -38922746 + LTR54 LTR ERV1 1 135 -375 1251 166 70 77 chr12 105359743 105360056 -38922433 + AluJo SINE Alu 1 311 -1 2339 135 155 44 chr12 105360056 105360232 -38922257 + LTR54 LTR ERV1 135 290 -220 2219 117 0 3 chr12 105360232 105360531 -38921958 + AluSq SINE Alu 1 298 -15 2339 135 155 44 chr12 105360531 105360660 -38921829 + LTR54 LTR ERV1 290 510 0 421 258 39 32 chr12 105360660 105360726 -38921763 + MIR SINE MIR 189 258 -4 254 371 60 7 chr12 105360741 105360892 -38921597 + L2 LINE L2 3102 3260 -12 1622 117 61 24 chr12 105360964 105361211 -38921278 - AluSg SINE Alu -6 304 49 25 0 0 0 chr12 105361225 105361250 -38921239 + AT_rich Low_complexity Low_complexity 1 25 0 1894 128 10 17 chr12 105361252 105361540 -38920949 + AluSg SINE Alu 1 286 -24 345 146 0 0 chr12 105361492 105361541 -38920948 + Alu SINE Alu 240 318 0 271 0 0 0 chr12 105361541 105361571 -38920918 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 714 233 15 4 chr12 105361718 105361892 -38920597 - L1ME4a LINE L1 -327 5794 5612 238 33 0 0 chr12 105361894 105361924 -38920565 + (TTTG)n Simple_repeat Simple_repeat 1 164 0 1716 179 3 14 chr12 105361924 105362209 -38920280 - AluJb SINE Alu -1 311 1 282 206 15 0 chr12 105362224 105362292 -38920197 + L1ME1 LINE L1 6093 6161 -5 279 0 0 0 chr12 105362319 105362350 -38920139 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1943 132 23 3 chr12 105362608 105362912 -38919577 - AluSx SINE Alu -2 310 1 380 240 72 32 chr12 105362936 105363061 -38919428 + L2 LINE L2 3160 3289 -24 256 150 117 0 chr12 105363088 105363148 -38919341 + L2 LINE L2 2330 2396 -918 2990 104 9 31 chr12 105363231 105363631 -38918858 + MER57B LTR ERV1 1 392 -42 2390 87 0 0 chr12 105363631 105363931 -38918558 - AluSx SINE Alu -12 300 1 2990 104 9 31 chr12 105363931 105363974 -38918515 + MER57B LTR ERV1 392 434 0 202 250 77 0 chr12 105363990 105364042 -38918447 + MER91C DNA MER1_type 54 109 -31 1052 235 33 42 chr12 105364042 105364194 -38918295 + L2 LINE L2 2395 2544 -770 2037 137 14 0 chr12 105364194 105364487 -38918002 + AluJb SINE Alu 1 297 -15 1052 235 33 42 chr12 105364487 105364640 -38917849 + L2 LINE L2 2544 2697 -617 1313 146 10 10 chr12 105364640 105364845 -38917644 - AluJo SINE Alu -18 294 90 313 235 105 123 chr12 105364852 105364905 -38917584 + L2 LINE L2 2696 2748 -565 1936 148 14 20 chr12 105364905 105365025 -38917464 + L1MA4 LINE L1 5947 6066 -234 2083 120 37 3 chr12 105365025 105365324 -38917165 + AluSx SINE Alu 1 309 -3 1936 148 14 20 chr12 105365324 105365548 -38916941 + L1MA4 LINE L1 6066 6289 -11 313 235 105 123 chr12 105365548 105365709 -38916780 + L2 LINE L2 2748 2910 -403 1727 120 35 35 chr12 105365709 105365992 -38916497 + AluSx SINE Alu 1 283 -29 313 235 105 123 chr12 105365992 105366243 -38916246 + L2 LINE L2 2910 3311 -2 2240 93 14 0 chr12 105367191 105367482 -38915007 + AluSq SINE Alu 1 295 -18 1773 89 30 4 chr12 105367519 105367756 -38914733 + AluSx SINE Alu 43 285 -27 243 61 0 0 chr12 105367948 105367981 -38914508 + (TTG)n Simple_repeat Simple_repeat 2 34 0 257 167 74 0 chr12 105367988 105368042 -38914447 - LTR8 LTR ERV1 -166 525 468 2256 93 7 0 chr12 105368152 105368443 -38914046 + AluSq SINE Alu 1 293 -20 1983 84 3 96 chr12 105368767 105369089 -38913400 + AluSx SINE Alu 1 292 -20 616 28 0 0 chr12 105369550 105369622 -38912867 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 635 14 0 0 chr12 105370299 105370371 -38912118 + tRNA-Trp tRNA tRNA 1 72 -3 237 233 105 0 chr12 105370816 105370902 -38911587 - MIR SINE MIR -86 176 82 2236 122 0 0 chr12 105370992 105371288 -38911201 + AluSg SINE Alu 2 297 -13 1252 139 117 70 chr12 105371294 105371567 -38910922 + MLT1B LTR MaLR 105 390 0 564 176 107 8 chr12 105371756 105371887 -38910602 + MER5A DNA MER1_type 42 185 -4 3682 81 47 26 chr12 105372450 105372843 -38909646 - MER41A LTR ERV1 -12 542 159 2622 62 7 0 chr12 105372843 105373148 -38909341 - AluSg SINE Alu -3 307 1 3682 81 47 26 chr12 105373148 105373232 -38909257 - MER41A LTR ERV1 -395 159 50 2511 75 10 0 chr12 105373232 105373539 -38908950 - AluSp SINE Alu -3 310 1 3682 81 47 26 chr12 105373539 105373591 -38908898 - MER41A LTR ERV1 -504 50 1 2303 107 27 68 chr12 105373591 105374195 -38908294 + MER4A LTR ERV1 20 664 0 371 215 111 7 chr12 105374320 105374455 -38908034 - L1ME4a LINE L1 -9 6112 5964 219 69 0 0 chr12 105374455 105374484 -38908005 + (T)n Simple_repeat Simple_repeat 1 29 0 1050 133 0 58 chr12 105374484 105374532 -38907957 - AluJo SINE Alu -130 182 133 2337 89 10 3 chr12 105374532 105374835 -38907654 - AluSq SINE Alu -8 305 1 1050 133 0 58 chr12 105374835 105374974 -38907515 - AluJo SINE Alu -179 133 6 417 271 116 10 chr12 105374977 105375176 -38907313 - L1ME4a LINE L1 -270 5851 5632 2111 107 10 0 chr12 105375192 105375483 -38907006 - AluSg SINE Alu -16 294 1 1842 105 90 0 chr12 105375493 105375760 -38906729 - AluSx SINE Alu -21 291 1 2192 79 38 0 chr12 105375958 105376248 -38906241 - AluSp SINE Alu -8 305 5 2113 132 0 7 chr12 105376316 105376620 -38905869 + AluSx SINE Alu 1 302 -10 1885 108 4 12 chr12 105376630 105376889 -38905600 + AluSq SINE Alu 3 259 -54 393 143 0 183 chr12 105376975 105377083 -38905406 + MER4A LTR ERV1 412 496 -168 1860 149 25 4 chr12 105377083 105377364 -38905125 - AluJb SINE Alu -25 287 1 393 143 0 183 chr12 105377364 105377381 -38905108 + MER4A LTR ERV1 496 514 -150 1228 316 110 52 chr12 105377557 105378524 -38903965 - L2 LINE L2 -1869 1445 423 21 0 0 0 chr12 105380701 105380722 -38901767 + GC_rich Low_complexity Low_complexity 1 21 0 2420 74 0 3 chr12 105381395 105381707 -38900782 - AluSp SINE Alu -2 311 1 202 210 81 32 chr12 105382249 105382311 -38900178 + L2 LINE L2 3248 3312 -1 2037 63 88 25 chr12 105382477 105382762 -38899727 + AluSq SINE Alu 1 303 -10 1054 174 19 81 chr12 105382902 105383161 -38899328 - AluJo SINE Alu -26 286 44 2337 68 3 3 chr12 105383485 105383778 -38898711 - AluY SINE Alu -18 293 1 1760 159 52 0 chr12 105383805 105384095 -38898394 - AluSx SINE Alu -7 305 1 2447 90 0 0 chr12 105384545 105384856 -38897633 - AluSx SINE Alu -1 311 1 369 0 0 0 chr12 105384869 105384910 -38897579 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 2192 102 0 14 chr12 105384921 105385205 -38897284 - AluSg SINE Alu -30 280 1 1512 108 205 0 chr12 105385223 105385472 -38897017 - AluY SINE Alu -1 300 1 2327 84 0 16 chr12 105385701 105386012 -38896477 - AluY SINE Alu -5 306 1 2107 103 7 14 chr12 105386345 105386627 -38895862 - AluSg SINE Alu -27 283 4 1620 164 68 7 chr12 105386635 105386915 -38895574 - AluJo SINE Alu -15 297 1 248 333 101 18 chr12 105387014 105387242 -38895247 + MIR SINE MIR 1 247 -15 278 269 64 64 chr12 105387388 105387529 -38894960 + MIR SINE MIR 118 258 -4 2010 109 57 14 chr12 105387872 105388155 -38894334 + AluSx SINE Alu 1 295 -17 2061 136 0 10 chr12 105388270 105388571 -38893918 - AluSx SINE Alu -6 306 9 1214 119 0 0 chr12 105388892 105389051 -38893438 + AluSg SINE Alu 1 159 -151 2119 105 0 51 chr12 105389301 105389615 -38892874 + AluSx SINE Alu 1 298 -14 295 315 114 21 chr12 105389841 105390219 -38892270 - MER4D LTR ERV1 -8 895 483 1329 201 41 112 chr12 105392835 105393416 -38889073 + HAL1b LINE L1 612 1151 -197 322 384 11 7 chr12 105394258 105394539 -38887950 - AluSx SINE Alu 0 302 21 24 32 0 0 chr12 105394939 105394970 -38887519 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr12 105395303 105395328 -38887161 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr12 105395430 105395451 -38887038 + (G)n Simple_repeat Simple_repeat 1 21 0 207 100 0 0 chr12 105396582 105396612 -38885877 + (T)n Simple_repeat Simple_repeat 1 30 0 290 244 286 0 chr12 105396818 105396937 -38885552 - MIR SINE MIR -106 156 4 685 135 18 0 chr12 105397403 105397514 -38884975 + L1MB7 LINE L1 6053 6165 -19 273 199 42 60 chr12 105398067 105398233 -38884256 + (CACCAT)n Simple_repeat Simple_repeat 1 163 0 184 287 170 72 chr12 105399292 105399557 -38882932 - L2 LINE L2 -165 3107 2817 22 0 0 0 chr12 105400125 105400147 -38882342 + AT_rich Low_complexity Low_complexity 1 22 0 1131 209 89 123 chr12 105400448 105401199 -38881290 + MER20B DNA MER1_type 36 761 -22 3909 168 40 10 chr12 105401538 105402317 -38880172 - L1 LINE L1 -1181 4965 4164 2130 124 7 0 chr12 105403279 105403577 -38878912 + AluSx SINE Alu 1 300 -12 1122 120 53 48 chr12 105404118 105404326 -38878163 + MER2 DNA MER2_type 1 209 -136 356 190 0 0 chr12 105404353 105404411 -38878078 + MER2 DNA MER2_type 268 325 -20 2446 88 0 0 chr12 105404498 105404804 -38877685 + AluSc SINE Alu 1 306 -3 1679 150 0 83 chr12 105405036 105405363 -38877126 + AluJb SINE Alu 1 300 -12 205 309 0 0 chr12 105405992 105406047 -38876442 + MIR3 SINE MIR 137 191 -17 2472 70 0 10 chr12 105406083 105406397 -38876092 - AluY SINE Alu 0 311 1 1122 120 53 48 chr12 105406793 105407001 -38875488 + MER2 DNA MER2_type 1 209 -136 356 190 0 0 chr12 105407028 105407086 -38875403 + MER2 DNA MER2_type 268 325 -20 1658 179 6 28 chr12 105407173 105407492 -38874997 + AluJb SINE Alu 1 312 0 2310 107 0 3 chr12 105407551 105407851 -38874638 - AluSq SINE Alu -14 299 1 1688 172 27 3 chr12 105408058 105408355 -38874134 - AluJo SINE Alu -8 304 1 1788 184 3 3 chr12 105408551 105408850 -38873639 + AluJo SINE Alu 1 299 -13 1641 138 16 4 chr12 105409486 105409732 -38872757 - AluSq SINE Alu -60 253 5 1961 144 20 0 chr12 105409732 105410031 -38872458 - AluSx SINE Alu -7 305 1 24 53 0 0 chr12 105410734 105410772 -38871717 + AT_rich Low_complexity Low_complexity 1 38 0 342 211 70 0 chr12 105413548 105413619 -38868870 - MER5C DNA MER1_type -247 77 2 2186 113 10 0 chr12 105414854 105415147 -38867342 - AluSq SINE Alu -17 296 1 2183 103 0 3 chr12 105416858 105417149 -38865340 - AluSq SINE Alu -23 290 1 2309 100 0 3 chr12 105417729 105418030 -38864459 - AluSx SINE Alu -11 301 2 730 237 114 78 chr12 105418057 105418503 -38863986 - L1MC5 LINE L1 -168 7793 7400 733 181 60 111 chr12 105418503 105418637 -38863852 + MER3 DNA MER1_type 5 125 -84 2186 94 37 0 chr12 105418637 105418934 -38863555 - AluSp SINE Alu -4 309 2 733 181 60 111 chr12 105418934 105419015 -38863474 + MER3 DNA MER1_type 125 209 0 730 237 114 78 chr12 105419015 105419132 -38863357 - L1MC5 LINE L1 -561 7400 7289 1725 284 182 25 chr12 105419257 105420504 -38861985 - L1MC4a LINE L1 -847 6961 5519 295 243 76 76 chr12 105420623 105420767 -38861722 - MER5B DNA MER1_type -30 148 5 2051 124 19 13 chr12 105420837 105421144 -38861345 + AluSx SINE Alu 1 309 -3 222 202 313 20 chr12 105421618 105421717 -38860772 + MER5A DNA MER1_type 62 189 0 23 54 0 0 chr12 105423368 105423405 -38859084 + AT_rich Low_complexity Low_complexity 1 37 0 2496 68 0 0 chr12 105423996 105424290 -38858199 - AluSx SINE Alu -18 294 1 799 193 0 0 chr12 105424818 105424932 -38857557 + FLAM_A SINE Alu 1 114 -19 2134 93 3 51 chr12 105425336 105425649 -38856840 - AluSq SINE Alu -15 298 1 2294 164 82 11 chr12 105425890 105426214 -38856275 + L1M3 LINE L1 4992 5291 -880 2413 75 3 0 chr12 105426214 105426509 -38855980 + AluSp SINE Alu 1 296 -17 2294 164 82 11 chr12 105426509 105426792 -38855697 + L1M3 LINE L1 5291 5667 -504 1941 95 44 22 chr12 105426792 105427065 -38855424 + AluY SINE Alu 1 279 -32 191 368 142 0 chr12 105427336 105427442 -38855047 + L2 LINE L2 3145 3265 -7 2122 110 7 3 chr12 105427801 105428093 -38854396 - AluSx SINE Alu -18 294 2 619 226 126 75 chr12 105428120 105428558 -38853931 - L1MC5 LINE L1 -168 7793 7334 1707 144 17 11 chr12 105428716 105429059 -38853430 - L1MB3 LINE L1 -272 5899 5563 918 221 14 42 chr12 105429789 105430074 -38852415 - AluJb SINE Alu -26 286 10 2434 74 7 0 chr12 105430617 105430913 -38851576 - AluSq SINE Alu -15 298 1 2303 102 0 7 chr12 105432377 105432682 -38849807 + AluSc SINE Alu 1 303 -6 1429 111 259 4 chr12 105432757 105433000 -38849489 - AluSx SINE Alu -7 305 1 704 273 15 25 chr12 105434314 105434512 -38847977 - MIR SINE MIR -6 256 61 1579 150 90 19 chr12 105434748 105435015 -38847474 + AluSx SINE Alu 1 286 -26 2161 77 59 0 chr12 105435077 105435364 -38847125 - AluSx SINE Alu -8 304 1 1902 138 14 3 chr12 105435890 105436173 -38846316 + AluSx SINE Alu 2 287 -25 2011 113 6 53 chr12 105436181 105436499 -38845990 + AluSq SINE Alu 1 303 -10 346 143 186 14 chr12 105436777 105436847 -38845642 + Tigger5 DNA MER2_type 2241 2322 -1 529 246 99 43 chr12 105436848 105437059 -38845430 + L1ME3 LINE L1 5834 6056 -106 828 194 56 61 chr12 105437059 105437239 -38845250 + AluJo SINE Alu 2 180 -132 253 218 11 46 chr12 105437262 105437349 -38845140 + L1MDb LINE L1 1289 1372 -5037 2459 43 3 10 chr12 105437359 105437658 -38844831 - AluSp SINE Alu -16 297 1 2337 52 0 14 chr12 105437832 105438118 -38844371 + AluY SINE Alu 1 282 -29 895 222 0 84 chr12 105438302 105438635 -38843854 - AluJb SINE Alu -1 311 7 408 298 152 32 chr12 105438727 105438999 -38843490 + L1MC4a LINE L1 5666 5989 -1819 462 36 0 0 chr12 105438999 105439055 -38843434 + (TG)n Simple_repeat Simple_repeat 1 56 0 408 298 152 32 chr12 105439055 105439124 -38843365 + L1MC4a LINE L1 5989 6048 -1760 2121 133 0 7 chr12 105439158 105439466 -38843023 - AluJb SINE Alu -6 306 1 246 246 16 0 chr12 105439491 105439552 -38842937 + L1ME3A LINE L1 5675 5736 -434 308 320 87 53 chr12 105439740 105439890 -38842599 + L1ME3A LINE L1 5963 6117 -53 935 155 62 0 chr12 105439890 105440051 -38842438 + FRAM SINE Alu 1 166 -10 335 138 52 0 chr12 105440069 105440127 -38842362 + L1M3 LINE L1 4673 4733 -1413 992 156 0 17 chr12 105440143 105440316 -38842173 - AluSg/x SINE Alu -3 307 138 2237 122 0 0 chr12 105440324 105440620 -38841869 - AluSx SINE Alu -14 298 3 2467 174 70 17 chr12 105440621 105440906 -38841583 + L1M3 LINE L1 4719 4987 -1184 1544 163 85 18 chr12 105440906 105441189 -38841300 + AluJb SINE Alu 1 302 -10 2467 174 70 17 chr12 105441189 105441507 -38840982 + L1M3 LINE L1 4987 5287 -884 2432 75 3 0 chr12 105441507 105441801 -38840688 + AluSx SINE Alu 1 295 -17 2467 174 70 17 chr12 105441801 105442084 -38840405 + L1M3 LINE L1 5287 5667 -504 2001 81 44 22 chr12 105442084 105442357 -38840132 + AluY SINE Alu 1 279 -32 266 122 0 20 chr12 105442357 105442406 -38840083 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 2099 121 0 0 chr12 105442407 105442687 -38839802 - AluSx SINE Alu -32 280 1 679 216 0 8 chr12 105442827 105442961 -38839528 - FLAM_A SINE Alu -2 140 8 2143 130 3 0 chr12 105442997 105443304 -38839185 + AluSx SINE Alu 1 308 -4 1040 173 12 18 chr12 105443317 105443485 -38839004 + FAM SINE Alu 1 167 -8 914 150 0 0 chr12 105444231 105444364 -38838125 + FLAM_C SINE Alu 1 133 0 2161 127 0 3 chr12 105444377 105444684 -38837805 + AluJb SINE Alu 1 306 -6 799 273 171 27 chr12 105444688 105444787 -38837702 - L1MC4a LINE L1 -1709 6099 6016 462 36 0 0 chr12 105444787 105444843 -38837646 + (CA)n Simple_repeat Simple_repeat 1 56 0 799 273 171 27 chr12 105444843 105445174 -38837315 - L1MC4a LINE L1 -1792 6016 5599 383 265 103 8 chr12 105445174 105445200 -38837289 - FLAM_A SINE Alu -174 128 106 1850 164 0 19 chr12 105445200 105445511 -38836978 + AluJb SINE Alu 1 305 -7 383 265 103 8 chr12 105445511 105445601 -38836888 - FLAM_A SINE Alu -196 106 1 799 273 171 27 chr12 105445601 105445620 -38836869 - L1MC4a LINE L1 -2209 5599 5584 2534 99 33 30 chr12 105445755 105445910 -38836579 + THE1B LTR MaLR 1 154 -210 360 0 0 0 chr12 105445910 105445950 -38836539 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2183 90 0 4 chr12 105445950 105446227 -38836262 - AluSc SINE Alu -32 277 2 2534 99 33 30 chr12 105446227 105446433 -38836056 + THE1B LTR MaLR 153 364 0 2310 82 3 0 chr12 105446757 105447050 -38835439 - AluSg SINE Alu -16 294 1 2382 78 14 0 chr12 105447094 105447389 -38835100 - AluSp SINE Alu -14 299 1 309 197 113 0 chr12 105447587 105447658 -38834831 + LTR50 LTR ERVL 1 79 -716 2226 114 0 0 chr12 105447814 105448113 -38834376 - AluSg SINE Alu -11 299 1 1168 149 0 11 chr12 105448116 105448297 -38834192 - AluSg/x SINE Alu 0 312 134 2134 104 20 10 chr12 105448298 105448596 -38833893 - AluSq SINE Alu -12 301 1 712 211 206 3 chr12 105448782 105449081 -38833408 + LTR50 LTR ERVL 340 776 -19 3544 164 98 46 chr12 105449170 105449791 -38832698 - MER21A LTR ERV1 -3 928 205 1804 143 0 0 chr12 105449791 105450050 -38832439 - AluSq SINE Alu -24 289 31 3544 164 98 46 chr12 105450050 105450256 -38832233 - MER21A LTR ERV1 -726 205 11 1193 118 0 6 chr12 105450325 105450495 -38831994 - AluSg/x SINE Alu -10 300 132 1856 116 91 7 chr12 105450495 105450771 -38831718 - AluSq SINE Alu -14 299 1 182 267 56 56 chr12 105451044 105451134 -38831355 - L2 LINE L2 0 3313 3224 605 205 33 0 chr12 105451291 105451413 -38831076 + L1MC4a LINE L1 6697 6822 -986 879 128 0 8 chr12 105451413 105451538 -38830951 + FLAM_C SINE Alu 1 124 -19 41 0 0 0 chr12 105451538 105451579 -38830910 + AT_rich Low_complexity Low_complexity 1 41 0 2279 192 56 71 chr12 105451584 105451690 -38830799 + L1MC4 LINE L1 6895 7001 -1041 1732 152 33 33 chr12 105451690 105451992 -38830497 + AluJo SINE Alu 1 302 -10 2279 192 56 71 chr12 105451992 105452095 -38830394 + L1MC4 LINE L1 7001 7104 -938 1882 157 0 4 chr12 105452095 105452395 -38830094 - AluSx SINE Alu 0 301 3 2279 192 56 71 chr12 105452395 105452458 -38830031 + L1MC4 LINE L1 7104 7166 -876 2044 128 16 26 chr12 105452458 105452770 -38829719 - AluSx SINE Alu -3 309 1 2279 192 56 71 chr12 105452770 105453186 -38829303 + L1MC4 LINE L1 7166 7576 -466 1712 34 0 0 chr12 105453181 105453389 -38829100 - L1PA7 LINE L1 -704 5468 5261 * 5957 48 6 0 chr12 105453389 105454070 -38828419 + L1PA7 LINE L1 5465 6152 -2 1500 174 0 16 chr12 105454112 105454370 -38828119 + AluSx SINE Alu 1 254 -58 865 202 54 36 chr12 105454377 105454600 -38827889 + L1MC4 LINE L1 7613 7839 -203 1916 141 0 4 chr12 105454600 105454877 -38827612 + AluSx SINE Alu 1 276 -36 318 147 73 29 chr12 105454903 105454971 -38827518 + L1MC4 LINE L1 7824 7894 -148 206 247 13 0 chr12 105454975 105455052 -38827437 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 539 172 17 17 chr12 105455067 105455183 -38827306 + L1MC4 LINE L1 7927 8042 0 401 311 143 59 chr12 105455612 105455934 -38826555 + MLT1J2 LTR MaLR 72 420 -30 189 74 0 0 chr12 105456009 105456036 -38826453 + (TTA)n Simple_repeat Simple_repeat 2 28 0 669 164 8 152 chr12 105456118 105456290 -38826199 + L1MC4 LINE L1 6450 6577 -1465 2027 127 20 0 chr12 105456290 105456589 -38825900 - AluSx SINE Alu -3 309 5 669 164 8 152 chr12 105456589 105456666 -38825823 + L1MC4 LINE L1 6577 6663 -1379 478 105 74 25 chr12 105456707 105456869 -38825620 + (TAGA)n Simple_repeat Simple_repeat 2 171 0 2332 91 3 10 chr12 105456910 105457219 -38825270 + AluSq SINE Alu 1 307 -6 2263 110 7 0 chr12 105457221 105457530 -38824959 + AluSp SINE Alu 1 311 -2 610 62 44 9 chr12 105457540 105457653 -38824836 + (TAGA)n Simple_repeat Simple_repeat 2 118 0 1366 179 92 68 chr12 105457670 105458006 -38824483 - MER2 DNA MER2_type 0 344 1 3995 170 67 148 chr12 105458014 105458273 -38824216 + L1MC4 LINE L1 6670 6949 -1093 932 147 7 20 chr12 105458273 105458423 -38824066 + FRAM SINE Alu 14 161 -15 3995 170 67 148 chr12 105458423 105459368 -38823121 + L1MC4 LINE L1 6949 7912 -130 263 203 13 0 chr12 105459413 105459492 -38822997 + (TA)n Simple_repeat Simple_repeat 1 80 0 209 119 24 0 chr12 105459497 105459539 -38822950 + GA-rich Low_complexity Low_complexity 2 44 0 640 162 18 0 chr12 105459540 105459651 -38822838 + L1MC4 LINE L1 7920 8032 -10 914 120 0 76 chr12 105459651 105459809 -38822680 + AluSg/x SINE Alu 135 280 -32 186 43 0 0 chr12 105459814 105459837 -38822652 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2014 124 39 0 chr12 105460230 105460513 -38821976 - AluY SINE Alu -17 294 1 2252 126 0 0 chr12 105460580 105460890 -38821599 - AluSq SINE Alu -3 310 1 2028 143 6 22 chr12 105460899 105461214 -38821275 - AluSx SINE Alu -2 310 1 2160 127 3 22 chr12 105461421 105461735 -38820754 - AluSq SINE Alu -5 308 1 289 284 126 31 chr12 105461738 105461865 -38820624 + MER5A DNA MER1_type 36 174 -4 2238 119 3 3 chr12 105462127 105462439 -38820050 + AluSq SINE Alu 2 313 0 204 40 0 0 chr12 105462634 105462659 -38819830 + (A)n Simple_repeat Simple_repeat 1 25 0 2093 109 7 0 chr12 105462659 105462970 -38819519 + AluSx SINE Alu 1 313 0 2256 114 0 3 chr12 105462970 105463277 -38819212 + AluSx SINE Alu 1 312 0 2368 94 0 3 chr12 105463478 105463776 -38818713 + AluSq SINE Alu 1 297 -16 955 301 71 52 chr12 105463887 105464465 -38818024 + MLT2F LTR ERVL 67 655 -8 2028 124 29 13 chr12 105464661 105464967 -38817522 + AluSx SINE Alu 1 311 -1 701 281 79 13 chr12 105464968 105465196 -38817293 - ERVL LTR ERVL -5071 693 451 2421 87 0 6 chr12 105465315 105465627 -38816862 + AluY SINE Alu 1 310 -1 2179 104 3 14 chr12 105465772 105466069 -38816420 - AluSg SINE Alu -16 294 1 590 258 93 46 chr12 105466084 105466263 -38816226 + ERVL-E LTR ERVL 452 621 -5143 1789 174 0 7 chr12 105466263 105466568 -38815921 - AluJb SINE Alu -9 303 1 590 258 93 46 chr12 105466568 105466720 -38815769 + ERVL-E LTR ERVL 621 872 -4892 1555 55 6 0 chr12 105466725 105466907 -38815582 + AluSp SINE Alu 35 217 -96 483 313 12 12 chr12 105467057 105467223 -38815266 + ERVL-E LTR ERVL 5592 5757 -7 727 200 29 9 chr12 105467982 105468136 -38814353 + MLT2E LTR ERVL 2 157 -471 454 271 0 16 chr12 105468147 105468269 -38814220 + MLT2F LTR ERVL 235 354 -309 202 350 58 22 chr12 105468441 105468578 -38813911 + L2 LINE L2 2734 2875 -439 368 286 62 57 chr12 105469120 105469200 -38813289 - L1ME LINE L1 -440 5730 5652 1835 168 14 7 chr12 105469200 105469497 -38812992 + AluSx SINE Alu 1 299 -13 368 286 62 57 chr12 105469497 105469608 -38812881 - L1ME LINE L1 -518 5652 5538 470 113 0 62 chr12 105469627 105469707 -38812782 + FLAM_A SINE Alu 56 130 -12 1086 124 59 0 chr12 105469968 105470137 -38812352 - AluSg/x SINE Alu 0 310 132 2294 108 3 10 chr12 105470137 105470451 -38812038 - AluSq SINE Alu -1 312 1 265 205 196 79 chr12 105470451 105470647 -38811842 - L1ME LINE L1 -831 5513 5285 770 158 0 43 chr12 105470647 105470786 -38811703 - FLAM_C SINE Alu 0 133 1 265 205 196 79 chr12 105470786 105470818 -38811671 - L1ME LINE L1 -1059 5285 5258 2543 263 50 49 chr12 105470876 105471225 -38811264 - L1ME LINE L1 -838 5308 4961 2250 113 7 3 chr12 105471225 105471535 -38810954 + AluSx SINE Alu 1 311 -1 2543 263 50 49 chr12 105471535 105472293 -38810196 - L1ME LINE L1 -1185 4961 4199 1998 166 70 21 chr12 105472331 105472647 -38809842 + Tigger3b DNA MER2_type 2 342 -2686 2442 70 3 10 chr12 105472647 105472945 -38809544 + AluSc SINE Alu 1 296 -13 1998 166 70 21 chr12 105472945 105473014 -38809475 + Tigger3b DNA MER2_type 342 406 -825 1857 114 0 4 chr12 105473014 105473259 -38809230 + AluSx SINE Alu 50 293 -19 477 0 0 0 chr12 105473260 105473313 -38809176 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 773 192 0 15 chr12 105473349 105473479 -38809010 - FLAM_C SINE Alu -14 129 2 2191 118 7 7 chr12 105473482 105473786 -38808703 - AluSx SINE Alu -7 305 2 1783 182 176 3 chr12 105473790 105474278 -38808211 - L1ME2 LINE L1 -275 5958 5346 2270 111 3 0 chr12 105474278 105474576 -38807913 - AluSg SINE Alu -11 299 1 1783 182 176 3 chr12 105474576 105474649 -38807840 - L1ME2 LINE L1 -887 5346 5287 2197 220 95 18 chr12 105474690 105475201 -38807288 - L1ME2 LINE L1 -3193 3022 2437 2415 69 3 3 chr12 105475201 105475505 -38806984 - AluY SINE Alu -7 304 1 2197 220 95 18 chr12 105475505 105475719 -38806770 - L1ME2 LINE L1 -3778 2437 2241 335 113 324 0 chr12 105475724 105475795 -38806694 - MER30 DNA MER1_type 0 230 137 372 198 0 81 chr12 105475812 105475841 -38806648 + Tigger5 DNA MER2_type 1 31 -335 2092 87 18 3 chr12 105475841 105476127 -38806362 + AluSc SINE Alu 1 290 -19 372 198 0 81 chr12 105476127 105476182 -38806307 + Tigger5 DNA MER2_type 31 78 -288 268 220 0 0 chr12 105476182 105476232 -38806257 - Tigger5 DNA MER2_type -3 2320 2271 810 255 154 14 chr12 105476243 105476666 -38805823 - L1ME2 LINE L1 -4154 2242 1761 313 241 54 45 chr12 105476840 105476891 -38805598 - MIR SINE MIR -65 197 148 540 211 124 31 chr12 105476891 105476974 -38805515 - MER45A DNA AcHobo -1403 178 104 2337 90 0 0 chr12 105476974 105477275 -38805214 + AluSx SINE Alu 1 301 -11 540 211 124 31 chr12 105477275 105477352 -38805137 - MER45A DNA AcHobo -1477 104 3 313 241 54 45 chr12 105477352 105477412 -38805077 - MIR SINE MIR -114 148 85 25 31 0 0 chr12 105480849 105480881 -38801608 + AT_rich Low_complexity Low_complexity 1 32 0 1920 138 26 22 chr12 105481267 105481578 -38800911 + AluSx SINE Alu 1 312 0 546 204 164 0 chr12 105481794 105481946 -38800543 - MER44D DNA MER2_type -162 447 1 2016 113 3 42 chr12 105481948 105482258 -38800231 - AluSx SINE Alu -13 299 2 2332 64 50 3 chr12 105483299 105483596 -38798893 - AluYa5 SINE Alu 0 311 1 2324 78 31 0 chr12 105483596 105483888 -38798601 - AluSp SINE Alu -11 302 1 1381 168 33 0 chr12 105484769 105484937 -38797552 - AluSx SINE Alu -8 304 124 2410 84 7 3 chr12 105484937 105485247 -38797242 - AluSq SINE Alu -2 311 1 1381 168 33 0 chr12 105485247 105485322 -38797167 - AluSx SINE Alu -188 124 53 21 36 0 0 chr12 105485613 105485641 -38796848 + AT_rich Low_complexity Low_complexity 1 28 0 2250 92 10 0 chr12 105486706 105486999 -38795490 - AluSp SINE Alu -17 296 1 534 253 76 57 chr12 105487844 105488073 -38794416 - MLT1G LTR MaLR -332 258 35 2381 72 7 0 chr12 105488508 105488799 -38793690 + AluSp SINE Alu 2 294 -19 216 0 0 0 chr12 105488799 105488823 -38793666 + (TA)n Simple_repeat Simple_repeat 2 25 0 960 186 164 19 chr12 105489032 105489295 -38793194 - AluJo SINE Alu -1 301 1 1766 172 10 3 chr12 105489308 105489598 -38792891 - AluJo SINE Alu -20 292 1 31 0 0 0 chr12 105489602 105489633 -38792856 + AT_rich Low_complexity Low_complexity 1 31 0 1824 157 39 0 chr12 105489673 105489953 -38792536 + AluJb SINE Alu 1 291 -21 2070 120 7 7 chr12 105490071 105490362 -38792127 + AluSx SINE Alu 1 291 -21 1891 134 28 3 chr12 105490372 105490663 -38791826 + AluJo SINE Alu 1 298 -14 23 33 0 0 chr12 105490866 105490896 -38791593 + AT_rich Low_complexity Low_complexity 1 30 0 1162 142 34 0 chr12 105491449 105491653 -38790836 - MER6 DNA MER2_type -22 843 633 2161 114 0 7 chr12 105491654 105491951 -38790538 + AluSg SINE Alu 1 295 -15 546 204 164 0 chr12 105492423 105492575 -38789914 - MER44D DNA MER2_type -162 447 1 792 239 13 52 chr12 105492577 105492887 -38789602 - AluSq SINE Alu -3 300 3 1723 92 0 38 chr12 105493467 105493707 -38788782 + AluSx SINE Alu 56 286 -26 1800 175 3 3 chr12 105493792 105494089 -38788400 + AluSx SINE Alu 3 299 -13 1395 150 12 114 chr12 105494093 105494426 -38788063 + AluSx SINE Alu 3 301 -1 273 242 0 0 chr12 105494885 105494947 -38787542 + MIR SINE MIR 195 256 -6 1895 126 3 11 chr12 105495869 105496154 -38786335 + AluSx SINE Alu 23 305 -7 2206 69 9 87 chr12 105496164 105496497 -38785992 + AluY SINE Alu 1 307 -4 590 116 11 0 chr12 105497047 105497142 -38785347 + AluY SINE Alu 154 249 -62 2368 86 0 0 chr12 105498276 105498566 -38783923 - AluSg SINE Alu -20 290 1 1466 163 40 86 chr12 105498599 105498924 -38783565 + AluJb SINE Alu 1 310 -2 324 0 0 0 chr12 105498924 105498960 -38783529 + (TA)n Simple_repeat Simple_repeat 2 37 0 2209 111 0 19 chr12 105499032 105499339 -38783150 - AluSx SINE Alu -11 301 1 2234 113 3 3 chr12 105499919 105500228 -38782261 - AluSx SINE Alu -3 309 1 330 95 0 0 chr12 105500358 105500400 -38782089 - 5S rRNA rRNA -79 42 1 1299 159 133 26 chr12 105500946 105501122 -38781367 - AluJo SINE Alu -12 300 144 2565 57 0 0 chr12 105501122 105501418 -38781071 - AluY SINE Alu -13 298 3 2239 98 14 7 chr12 105501420 105501715 -38780774 - AluSq SINE Alu -16 297 1 1299 159 133 26 chr12 105501715 105501806 -38780683 - AluJo SINE Alu -168 144 1 719 199 54 6 chr12 105502595 105502761 -38779728 - MER5B DNA MER1_type -1 177 4 232 219 16 0 chr12 105503732 105503796 -38778693 - MIR SINE MIR -14 248 184 2495 82 0 0 chr12 105503815 105504118 -38778371 - AluSc SINE Alu -6 303 1 749 144 0 0 chr12 105504118 105504229 -38778260 - AluSg/x SINE Alu -8 302 192 370 146 65 122 chr12 105504606 105504710 -38777779 + MIR SINE MIR 60 158 -104 1598 170 51 4 chr12 105504710 105504986 -38777503 - AluJb SINE Alu -23 289 1 370 146 65 122 chr12 105504986 105505004 -38777485 + MIR SINE MIR 158 175 -87 945 178 19 6 chr12 105505006 105505163 -38777326 - FRAM SINE Alu -22 154 1 604 228 76 23 chr12 105505198 105505369 -38777120 - AluJo SINE Alu -7 305 126 1120 152 0 0 chr12 105505453 105505618 -38776871 - AluSg/x SINE Alu -13 299 135 2224 80 11 21 chr12 105506566 105506893 -38775596 + AluSp SINE Alu 1 324 0 1982 125 21 3 chr12 105507184 105507472 -38775017 - AluJb SINE Alu -19 293 1 1556 203 11 7 chr12 105508085 105508366 -38774123 - AluJb SINE Alu -30 282 1 1957 120 47 0 chr12 105508586 105508861 -38773628 - AluSx SINE Alu -24 288 1 2200 110 7 0 chr12 105509011 105509302 -38773187 - AluSx SINE Alu -11 301 9 2256 110 0 0 chr12 105509363 105509662 -38772827 - AluSg SINE Alu -11 299 1 2068 80 0 4 chr12 105510224 105510487 -38772002 - AluSx SINE Alu -9 303 42 933 111 0 15 chr12 105513543 105513678 -38768811 + AluSq/x SINE Alu 1 133 -179 2213 110 3 0 chr12 105513791 105514083 -38768406 - AluSx SINE Alu -19 293 1 1265 169 153 4 chr12 105514101 105514350 -38768139 - AluJo SINE Alu -26 286 1 856 155 31 0 chr12 105514377 105514506 -38767983 - FLAM_C SINE Alu 0 133 1 2266 78 4 4 chr12 105515606 105515909 -38766580 - AluY SINE Alu 0 303 1 2053 138 3 3 chr12 105517770 105518074 -38764415 - AluSx SINE Alu -8 304 1 2701 42 0 0 chr12 105518234 105518543 -38763946 - AluY SINE Alu -2 309 1 243 383 114 20 chr12 105518911 105519112 -38763377 - L2 LINE L2 -33 3239 3020 187 248 238 19 chr12 105519435 105519540 -38762949 - L2 LINE L2 -7 3265 3138 1645 162 52 0 chr12 105520065 105520182 -38762307 + AluJo SINE Alu 1 111 -201 288 0 0 0 chr12 105520182 105520214 -38762275 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1645 162 52 0 chr12 105520214 105520367 -38762122 + AluJo SINE Alu 111 285 -27 828 168 0 0 chr12 105520753 105520878 -38761611 - AluJb SINE Alu -187 125 1 2131 102 30 3 chr12 105520907 105521212 -38761277 + AluSq SINE Alu 1 313 0 1090 140 62 0 chr12 105521269 105521483 -38761006 + MER6B DNA MER2_type 2 210 0 273 289 154 10 chr12 105521485 105521589 -38760900 - MIR SINE MIR -67 195 77 2430 102 0 3 chr12 105521725 105522039 -38760450 - AluSp SINE Alu 0 313 1 2272 100 0 0 chr12 105522095 105522384 -38760105 - AluSg SINE Alu -21 289 1 874 178 11 46 chr12 105522417 105522591 -38759898 + AluJo SINE Alu 1 168 -144 23 0 0 0 chr12 105523093 105523116 -38759373 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr12 105523174 105523209 -38759280 + GC_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr12 105523260 105523285 -38759204 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 105523285 105523306 -38759183 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 105523387 105523408 -38759081 + GC_rich Low_complexity Low_complexity 1 21 0 249 57 0 0 chr12 105523430 105523465 -38759024 + (A)n Simple_repeat Simple_repeat 1 35 0 230 292 29 88 chr12 105523480 105523617 -38758872 + L2 LINE L2 3144 3272 0 1988 184 28 50 chr12 105523852 105524275 -38758214 + MLT2D LTR ERVL 1 414 0 1523 161 79 0 chr12 105524300 105524580 -38757909 - AluJb SINE Alu -10 302 1 2269 65 0 17 chr12 105524731 105525024 -38757465 + AluY SINE Alu 1 288 -23 2517 74 0 0 chr12 105525031 105525342 -38757147 + AluSq SINE Alu 1 311 -2 1404 189 3 66 chr12 105525369 105525706 -38756783 + AluJo SINE Alu 2 319 0 1547 154 0 79 chr12 105525890 105526195 -38756294 + AluJo SINE Alu 23 303 -9 233 163 291 23 chr12 105526200 105526286 -38756203 - L1MA10 LINE L1 -56 6278 6170 2592 172 32 8 chr12 105526320 105526801 -38755688 + MLT2B1 LTR ERVL 1 429 -24 231 36 0 0 chr12 105526816 105526844 -38755645 + (CCTA)n Simple_repeat Simple_repeat 2 29 0 290 123 0 53 chr12 105526844 105526901 -38755588 + MLT2B1 LTR ERVL 403 456 -8 357 143 0 57 chr12 105526908 105526978 -38755511 - L1ME1 LINE L1 -190 5976 5911 2031 121 0 26 chr12 105527020 105527325 -38755164 - AluSx SINE Alu -13 299 3 1860 155 104 15 chr12 105527504 105527839 -38754650 + MLT1A1 LTR MaLR 1 365 0 324 0 0 0 chr12 105528105 105528141 -38754348 + (TG)n Simple_repeat Simple_repeat 1 36 0 1993 112 3 34 chr12 105529205 105529527 -38752962 - AluSx SINE Alu 0 312 1 5982 127 37 22 chr12 105529840 105530027 -38752462 - L1MA9 LINE L1 0 6312 6129 1721 157 17 20 chr12 105530027 105530326 -38752163 - AluSx SINE Alu -14 298 1 5982 127 37 22 chr12 105530326 105531764 -38750725 - L1MA9 LINE L1 -183 6129 4666 228 308 115 23 chr12 105532060 105532190 -38750299 + Tigger8 DNA MER2_type 1 142 -524 649 230 199 67 chr12 105532316 105532707 -38749782 + Tigger8 DNA MER2_type 221 663 -3 195 291 91 0 chr12 105532777 105532832 -38749657 - L2 LINE L2 -76 3196 3137 708 147 9 9 chr12 105532880 105532989 -38749500 + FAM SINE Alu 62 170 -15 2583 57 0 0 chr12 105533141 105533439 -38749050 + AluY SINE Alu 1 298 -13 697 88 137 10 chr12 105533442 105533544 -38748945 - AluJo/FLAM SINE Alu -186 116 2 1336 129 152 11 chr12 105534427 105534690 -38747799 + AluSg1 SINE Alu 1 300 -9 17762 124 20 17 chr12 105534841 105535430 -38747059 - L1 LINE L1 -3097 4468 3882 181 0 69 0 chr12 105535430 105535459 -38747030 + (TA)n Simple_repeat Simple_repeat 2 32 0 17762 124 20 17 chr12 105535459 105538220 -38744269 - L1 LINE L1 -3683 3882 1099 735 107 36 0 chr12 105538217 105538329 -38744160 - L1 LINE L1 -7432 133 18 * 231 218 18 0 chr12 105539667 105539722 -38742767 + GA-rich Low_complexity Low_complexity 1 56 0 2159 102 3 14 chr12 105540204 105540549 -38741940 + AluY SINE Alu 1 311 0 188 203 43 87 chr12 105541026 105541095 -38741394 + L2 LINE L2 3193 3258 -55 235 260 0 65 chr12 105541167 105541244 -38741245 + L2 LINE L2 3242 3313 0 976 319 107 20 chr12 105541249 105541847 -38740642 - L2 LINE L2 -414 2900 2251 1918 225 16 18 chr12 105541982 105542430 -38740059 + L2 LINE L2 2283 2729 -585 745 282 131 30 chr12 105542412 105542809 -38739680 + L2 LINE L2 2831 3267 -46 * 207 114 0 0 chr12 105542906 105542941 -38739548 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 457 261 96 0 chr12 105543350 105543465 -38739024 - MSTC LTR MaLR -302 126 1 376 280 40 0 chr12 105543739 105543839 -38738650 - MER5A DNA MER1_type -77 112 9 261 0 0 0 chr12 105544283 105544312 -38738177 + (A)n Simple_repeat Simple_repeat 1 29 0 1595 194 14 17 chr12 105544397 105544529 -38737960 + AluJo SINE Alu 1 132 -180 2195 122 3 0 chr12 105544529 105544824 -38737665 + AluSx SINE Alu 1 296 -16 1595 194 14 17 chr12 105544824 105544985 -38737504 + AluJo SINE Alu 132 293 -19 213 344 74 48 chr12 105544986 105545364 -38737125 - L2 LINE L2 -843 2471 2084 313 300 47 59 chr12 105545511 105545681 -38736808 + MIR SINE MIR 34 201 -61 278 254 80 43 chr12 105545851 105545989 -38736500 - L2 LINE L2 -4 3309 3167 756 220 82 13 chr12 105546932 105547091 -38735398 + FRAM SINE Alu 1 169 -7 2273 108 0 0 chr12 105547329 105547624 -38734865 - AluSx SINE Alu -6 306 12 805 82 6 76 chr12 105548599 105548757 -38733732 + AluY SINE Alu 2 148 -163 486 302 106 54 chr12 105548968 105549199 -38733290 - MIR SINE MIR -3 259 18 304 239 99 74 chr12 105549203 105549397 -38733092 + MIR SINE MIR 16 195 -13 602 143 15 113 chr12 105549399 105549532 -38732957 - MER44D DNA MER2_type -1 608 489 1877 172 112 32 chr12 105549612 105550024 -38732465 - MER44D DNA MER2_type -100 505 6 495 294 40 40 chr12 105550821 105551022 -38731467 + MIR SINE MIR 1 201 -61 2267 113 0 0 chr12 105551257 105551557 -38730932 - AluSx SINE Alu -12 300 1 197 339 0 15 chr12 105552181 105552246 -38730243 + MIR SINE MIR 11 74 -188 461 259 38 15 chr12 105552263 105552394 -38730095 - MIR SINE MIR -109 153 20 261 317 58 10 chr12 105552721 105552825 -38729664 - L2 LINE L2 -9 3263 3155 328 211 0 0 chr12 105552972 105553029 -38729460 - L2 LINE L2 -3 3269 3213 32 26 0 0 chr12 105553913 105553952 -38728537 + AT_rich Low_complexity Low_complexity 1 39 0 198 320 39 13 chr12 105554209 105554287 -38728202 - MIR SINE MIR -64 144 65 1018 148 66 33 chr12 105555007 105555189 -38727300 - MER5A DNA MER1_type 0 189 2 312 266 50 55 chr12 105555218 105555348 -38727141 - MER5B DNA MER1_type -2 176 51 195 42 0 0 chr12 105555668 105555692 -38726797 + (T)n Simple_repeat Simple_repeat 1 24 0 303 71 0 0 chr12 105555762 105555804 -38726685 + (TCCCC)n Simple_repeat Simple_repeat 2 43 0 249 139 0 0 chr12 105555931 105555974 -38726515 + (TCCCC)n Simple_repeat Simple_repeat 5 47 0 7778 40 0 0 chr12 105556548 105558011 -38724478 - L1PA5 LINE L1 -1 6153 4681 211 361 24 0 chr12 105558197 105558280 -38724209 - MIR SINE MIR -23 239 155 277 264 198 19 chr12 105558358 105558464 -38724025 + L2 LINE L2 3189 3313 0 742 193 10 23 chr12 105559782 105560307 -38722182 + CT-rich Low_complexity Low_complexity 1 517 0 855 275 128 26 chr12 105560308 105560730 -38721759 - L2 LINE L2 -7 3306 2842 237 33 0 0 chr12 105562596 105562626 -38719863 + (GA)n Simple_repeat Simple_repeat 1 30 0 249 300 11 22 chr12 105562875 105562965 -38719524 + MIR3 SINE MIR 87 175 -33 313 61 15 61 chr12 105563876 105563942 -38718547 - AluS SINE Alu -239 64 2 571 249 60 87 chr12 105563945 105564565 -38717924 - L1MEc LINE L1 -4707 1508 954 2305 49 0 21 chr12 105564566 105564878 -38717611 - AluY SINE Alu 0 306 1 4785 95 8 19 chr12 105565714 105565751 -38716738 + L1MA3 LINE L1 5271 5307 -998 1765 154 7 3 chr12 105565751 105566044 -38716445 + AluSp SINE Alu 1 294 -19 4785 95 8 19 chr12 105566044 105566746 -38715743 + L1MA3 LINE L1 5307 6002 -303 1254 86 15 15 chr12 105566874 105567071 -38715418 + L1PA5 LINE L1 5876 6072 -82 469 322 0 0 chr12 105568301 105568447 -38714042 + G-rich Low_complexity Low_complexity 1 146 0 512 264 68 68 chr12 105569216 105569281 -38713208 - L1MC5 LINE L1 -100 7861 7797 2153 99 7 7 chr12 105569281 105569574 -38712915 - AluSc SINE Alu -16 293 1 512 264 68 68 chr12 105569574 105569589 -38712900 - L1MC5 LINE L1 -164 7797 7783 2037 128 3 3 chr12 105569589 105569877 -38712612 - AluSx SINE Alu -24 288 1 512 264 68 68 chr12 105569877 105570284 -38712205 - L1MC5 LINE L1 -177 7784 7373 2512 68 0 0 chr12 105571020 105571316 -38711173 + AluSg1 SINE Alu 1 296 -13 1036 122 0 0 chr12 105571353 105571492 -38710997 + FRAM SINE Alu 26 164 -12 310 95 0 0 chr12 105572038 105572080 -38710409 + 5S rRNA rRNA 1 42 -79 2215 112 3 3 chr12 105572210 105572515 -38709974 + AluSx SINE Alu 1 305 -7 2098 130 0 19 chr12 105573099 105573406 -38709083 + AluSx SINE Alu 1 301 -11 324 0 0 0 chr12 105573478 105573514 -38708975 + (TA)n Simple_repeat Simple_repeat 2 37 0 1501 163 40 86 chr12 105573514 105573840 -38708649 - AluJb SINE Alu -1 311 1 2437 87 6 0 chr12 105573873 105574184 -38708305 + AluSq SINE Alu 1 313 0 297 268 161 9 chr12 105574316 105574428 -38708061 + MIR SINE MIR 77 205 -57 998 155 50 0 chr12 105574455 105574636 -38707853 - MER6B DNA MER2_type -19 191 2 1942 110 42 26 chr12 105574686 105574994 -38707495 - AluSq SINE Alu 0 313 1 314 307 0 13 chr12 105575040 105575190 -38707299 - L1MC4a LINE L1 -1926 5882 5735 276 159 0 0 chr12 105575246 105575290 -38707199 - Alu SINE Alu -255 47 4 367 310 95 21 chr12 105575320 105575604 -38706885 - L1MC4a LINE L1 -439 5682 5378 2070 89 50 11 chr12 105577539 105577819 -38704670 + AluSq SINE Alu 1 291 -22 1717 151 22 45 chr12 105578977 105579148 -38703341 - AluJo SINE Alu -7 305 143 1830 183 0 0 chr12 105579148 105579437 -38703052 - AluJb SINE Alu -21 291 3 1717 151 22 45 chr12 105579437 105579577 -38702912 - AluJo SINE Alu -169 143 1 291 301 58 38 chr12 105579624 105579916 -38702573 - L1ME LINE L1 -605 5557 5260 2224 75 7 0 chr12 105579940 105580249 -38702240 - AluSp SINE Alu 0 311 1 2373 112 0 0 chr12 105580699 105581011 -38701478 + AluSx SINE Alu 1 312 0 297 0 0 0 chr12 105581016 105581049 -38701440 + (TA)n Simple_repeat Simple_repeat 2 34 0 1750 141 48 0 chr12 105581737 105582031 -38700458 - AluSx SINE Alu 0 307 1 6138 34 7 11 chr12 105582147 105582860 -38699629 - SVA Other Other 0 1386 677 1595 143 47 53 chr12 105582939 105583106 -38699383 - AluJb SINE Alu -13 299 133 2561 60 0 0 chr12 105583106 105583407 -38699082 - AluY SINE Alu -10 301 1 1595 143 47 53 chr12 105583407 105583540 -38698949 - AluJb SINE Alu -179 133 1 1087 339 134 25 chr12 105583938 105584685 -38697804 + L2 LINE L2 258 1085 -2229 248 294 54 33 chr12 105584715 105584807 -38697682 + L2 LINE L2 442 535 -2779 334 140 0 0 chr12 105584974 105585031 -38697458 - L1MC/D LINE L1 -2069 5739 5683 774 266 40 0 chr12 105585064 105585241 -38697248 + MIR SINE MIR 49 232 -30 321 301 86 24 chr12 105585753 105585927 -38696562 - MIR SINE MIR -51 211 28 1189 181 9 14 chr12 105585968 105586184 -38696305 + MER20 DNA MER1_type 1 215 -4 2322 105 3 3 chr12 105586794 105587107 -38695382 + AluSq SINE Alu 1 313 0 1848 182 0 7 chr12 105587388 105587685 -38694804 + AluJb SINE Alu 1 295 -17 183 240 40 0 chr12 105587803 105587853 -38694636 - L2 LINE L2 -1 3312 3261 * 203 143 0 29 chr12 105587834 105587869 -38694620 - MIR SINE MIR -28 234 201 262 299 130 0 chr12 105587979 105588056 -38694433 - L2 LINE L2 0 3272 3186 180 207 0 0 chr12 105588243 105588272 -38694217 + MER5A DNA MER1_type 143 171 -18 1776 88 12 4 chr12 105588285 105588525 -38693964 - AluY SINE Alu -69 242 1 2078 88 28 0 chr12 105588790 105589073 -38693416 - AluSp SINE Alu -2 311 21 274 228 13 0 chr12 105589309 105589388 -38693101 - MER116 DNA Mariner 0 80 1 23 0 0 0 chr12 105589756 105589779 -38692710 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr12 105589923 105589953 -38692536 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr12 105590300 105590329 -38692160 + AT_rich Low_complexity Low_complexity 1 29 0 695 217 0 0 chr12 105590718 105590838 -38691651 - FLAM_C SINE Alu -13 120 1 2263 119 7 0 chr12 105590972 105591282 -38691207 - AluSx SINE Alu 0 312 1 2013 114 7 0 chr12 105591320 105591641 -38690848 - AluSg SINE Alu 0 323 1 520 223 82 43 chr12 105591827 105591866 -38690623 - L1ME4a LINE L1 -197 5924 5888 1675 181 10 14 chr12 105591866 105592159 -38690330 - AluJo SINE Alu -20 292 1 520 223 82 43 chr12 105592159 105592352 -38690137 - L1ME4a LINE L1 -233 5888 5683 1162 207 0 31 chr12 105592355 105592577 -38689912 - AluJo SINE Alu -13 299 85 216 0 0 0 chr12 105592580 105592604 -38689885 + (TA)n Simple_repeat Simple_repeat 2 25 0 309 257 133 18 chr12 105592690 105592803 -38689686 - L1ME4a LINE L1 -437 5684 5559 1471 190 104 48 chr12 105593713 105594155 -38688334 - L1MD3 LINE L1 -12 7983 7517 826 169 0 0 chr12 105594184 105594308 -38688181 - AluJb SINE Alu -186 126 3 467 181 0 0 chr12 105594313 105594407 -38688082 - L1MC4a LINE L1 -479 7329 7236 1471 142 50 76 chr12 105594437 105594740 -38687749 - AluJo SINE Alu -17 295 1 1990 135 3 41 chr12 105595090 105595408 -38687081 - AluJb SINE Alu -6 306 1 478 209 156 52 chr12 105595711 105595922 -38686567 - L2 LINE L2 0 3313 3081 * 1078 251 17 67 chr12 105595920 105596266 -38686223 - L2 LINE L2 -788 2526 2198 428 263 139 10 chr12 105596438 105596632 -38685857 - L1ME LINE L1 -320 5801 5583 290 262 185 21 chr12 105596665 105596951 -38685538 - L1ME4a LINE L1 -2 6119 5787 543 232 45 34 chr12 105596993 105597176 -38685313 - L1ME4a LINE L1 -442 5679 5498 321 100 14 29 chr12 105597181 105597251 -38685238 + (TCCCC)n Simple_repeat Simple_repeat 4 72 0 1651 177 3 18 chr12 105597286 105597568 -38684921 - AluJb SINE Alu -34 278 1 23 68 0 0 chr12 105597769 105597813 -38684676 + AT_rich Low_complexity Low_complexity 1 44 0 29 78 0 0 chr12 105598029 105598093 -38684396 + AT_rich Low_complexity Low_complexity 1 64 0 590 273 70 62 chr12 105599315 105599478 -38683011 + MIR SINE MIR 7 175 -87 2075 134 0 0 chr12 105599478 105599789 -38682700 - AluSx SINE Alu 0 311 1 590 273 70 62 chr12 105599789 105599866 -38682623 + MIR SINE MIR 175 250 -12 2140 84 3 14 chr12 105600061 105600382 -38682107 - AluSp SINE Alu 0 318 1 296 286 22 88 chr12 105600394 105600523 -38681966 - MIR SINE MIR -90 172 57 1701 112 165 8 chr12 105600523 105600790 -38681699 + AluSg1 SINE Alu 1 309 0 296 286 22 88 chr12 105600790 105600842 -38681647 - MIR SINE MIR -205 57 3 21 36 0 0 chr12 105601274 105601302 -38681187 + AT_rich Low_complexity Low_complexity 1 28 0 1714 189 19 10 chr12 105601308 105601615 -38680874 - AluJb SINE Alu -1 311 2 207 0 0 0 chr12 105601764 105601787 -38680702 + (TC)n Simple_repeat Simple_repeat 2 24 0 673 171 128 117 chr12 105601932 105602189 -38680300 + MIR SINE MIR 3 262 0 2038 156 15 0 chr12 105602771 105603110 -38679379 - MER2 DNA MER2_type 0 344 1 293 308 67 2 chr12 105603276 105603406 -38679083 - MIR SINE MIR -65 143 21 2091 119 17 0 chr12 105603540 105603833 -38678656 - AluSx SINE Alu -14 298 1 2413 78 7 0 chr12 105603975 105604269 -38678220 - AluSx SINE Alu -16 296 1 8597 180 29 36 chr12 105605614 105607382 -38675107 + MER52A LTR ERV1 1 1755 0 23 0 0 0 chr12 105607565 105607588 -38674901 + AT_rich Low_complexity Low_complexity 1 23 0 851 206 5 38 chr12 105607874 105608058 -38674431 - AluJo SINE Alu -14 298 121 1952 173 0 0 chr12 105608386 105608686 -38673803 - AluSx SINE Alu -12 300 1 2583 49 0 0 chr12 105609369 105609677 -38672812 - AluY SINE Alu -3 308 1 237 368 44 29 chr12 105609793 105609929 -38672560 - MIR3 SINE MIR -68 140 3 443 298 80 21 chr12 105609963 105610151 -38672338 - MIR SINE MIR -51 211 13 787 239 107 66 chr12 105610683 105611093 -38671396 - MLT1K LTR MaLR -8 580 154 28 0 0 0 chr12 105611571 105611599 -38670890 + AT_rich Low_complexity Low_complexity 1 28 0 301 267 0 20 chr12 105611685 105611831 -38670658 + CT-rich Low_complexity Low_complexity 1 143 0 626 251 63 67 chr12 105612600 105612665 -38669824 - L1MC5 LINE L1 -100 7861 7797 2185 96 7 7 chr12 105612665 105612958 -38669531 - AluSc SINE Alu -16 293 1 626 251 63 67 chr12 105612958 105612973 -38669516 - L1MC5 LINE L1 -164 7797 7783 2037 128 3 3 chr12 105612973 105613261 -38669228 - AluSx SINE Alu -24 288 1 626 251 63 67 chr12 105613261 105613670 -38668819 - L1MC5 LINE L1 -178 7783 7373 2502 68 0 0 chr12 105614407 105614702 -38667787 + AluSg1 SINE Alu 1 295 -14 288 162 11 48 chr12 105614799 105614898 -38667591 - MSTD LTR MaLR 0 396 305 807 154 51 32 chr12 105614945 105615101 -38667388 - MSTD LTR MaLR -256 140 1 1532 119 9 0 chr12 105615134 105615352 -38667137 - AluSg/x SINE Alu -8 304 85 1554 181 64 24 chr12 105615786 105616084 -38666405 - AluJo SINE Alu -2 310 1 185 61 91 0 chr12 105616090 105616123 -38666366 + T-rich Low_complexity Low_complexity 2 37 0 1690 202 6 6 chr12 105616127 105616439 -38666050 - AluJb SINE Alu 0 312 1 261 0 0 0 chr12 105616760 105616789 -38665700 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 264 30 0 0 chr12 105616788 105616821 -38665668 + (TG)n Simple_repeat Simple_repeat 1 33 0 1324 183 115 4 chr12 105616828 105617080 -38665409 - AluJo SINE Alu -30 282 3 212 362 107 51 chr12 105617988 105618251 -38664238 + L2 LINE L2 1236 1483 -1831 2433 74 3 0 chr12 105618251 105618547 -38663942 + AluSg SINE Alu 1 297 -13 212 362 107 51 chr12 105618547 105618891 -38663598 + L2 LINE L2 1483 1877 -1437 2352 88 0 3 chr12 105619399 105619707 -38662782 - AluY SINE Alu -4 307 1 4190 103 43 11 chr12 105619733 105620390 -38662099 - L1PA16 LINE L1 -9 6157 5480 684 169 0 60 chr12 105620427 105620583 -38661906 - L1 LINE L1 -1673 4473 4328 788 172 0 22 chr12 105620583 105620717 -38661772 - FLAM_C SINE Alu -1 132 2 684 169 0 60 chr12 105620717 105620743 -38661746 - L1 LINE L1 -1818 4328 4302 * 858 232 103 124 chr12 105620737 105622154 -38660335 - HAL1 LINE L1 -334 2173 787 1389 206 30 3 chr12 105621339 105621669 -38660820 + L1P LINE L1 4879 5217 -929 482 101 25 0 chr12 105622202 105622281 -38660208 - AluY SINE Alu -13 298 218 2191 111 0 32 chr12 105622355 105622671 -38659818 - AluSg SINE Alu 0 310 5 1098 131 0 48 chr12 105622687 105622855 -38659634 - AluJb SINE Alu -18 294 135 660 248 158 72 chr12 105622862 105623419 -38659070 - HAL1 LINE L1 -1854 653 49 1408 181 41 86 chr12 105623429 105623882 -38658607 - MSTB1 LTR MaLR -1 401 1 901 123 8 0 chr12 105623990 105624120 -38658369 - AluJb SINE Alu -181 131 1 260 378 7 40 chr12 105624136 105624284 -38658205 - L2 LINE L2 -5 3267 3125 292 344 28 78 chr12 105624556 105624774 -38657715 + L2 LINE L2 3029 3235 -37 880 125 0 31 chr12 105625529 105625542 -38656947 - FLAM_C SINE Alu -178 124 112 189 0 0 0 chr12 105625542 105625563 -38656926 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 880 125 0 31 chr12 105625563 105625677 -38656812 - FLAM_C SINE Alu -190 112 1 259 256 187 0 chr12 105627536 105627631 -38654858 - MIR SINE MIR -75 133 38 1911 172 57 5 chr12 105627922 105628311 -38654178 - L1MB4 LINE L1 0 6180 5772 1984 136 64 13 chr12 105628560 105628934 -38653555 - L1MB4 LINE L1 -396 5784 5392 2449 62 0 0 chr12 105629395 105629687 -38652802 - AluY SINE Alu -17 294 3 2361 76 0 50 chr12 105629867 105630184 -38652305 + AluSp SINE Alu 1 301 -12 255 204 0 0 chr12 105631045 105631089 -38651400 - L2 LINE L2 -8 3264 3221 768 129 14 43 chr12 105631450 105631590 -38650899 - FLAM_C SINE Alu -7 136 1 1856 140 0 14 chr12 105632097 105632382 -38650107 - AluSx SINE Alu -5 307 27 1002 226 82 78 chr12 105633194 105633730 -38648759 - L1MC4a LINE L1 -1655 6153 5616 199 260 20 0 chr12 105634097 105634147 -38648342 - L2 LINE L2 -2 3311 3261 198 320 37 86 chr12 105634505 105634749 -38647740 + L2 LINE L2 2812 3043 -229 260 205 361 25 chr12 105634961 105635017 -38647472 - MIR SINE MIR 0 262 226 213 39 0 0 chr12 105635017 105635043 -38647446 + (TA)n Simple_repeat Simple_repeat 1 26 0 260 205 361 25 chr12 105635043 105635108 -38647381 - MIR SINE MIR -36 226 100 2235 112 7 0 chr12 105635273 105635569 -38646920 - AluSx SINE Alu -14 298 1 218 221 132 15 chr12 105635576 105635644 -38646845 - MER5C DNA MER1_type -248 76 1 306 304 76 11 chr12 105635644 105635736 -38646753 - MIR SINE MIR -153 109 12 2030 133 13 0 chr12 105637196 105637498 -38644991 - AluSx SINE Alu -6 306 1 21 36 0 0 chr12 105637504 105637532 -38644957 + AT_rich Low_complexity Low_complexity 1 28 0 756 150 0 24 chr12 105637917 105638044 -38644445 - FLAM_C SINE Alu -5 128 5 313 387 0 8 chr12 105638080 105638204 -38644285 + MIR3 SINE MIR 5 127 -81 1674 186 13 7 chr12 105639839 105640140 -38642349 - AluJo SINE Alu -9 303 1 1794 174 3 7 chr12 105640150 105640443 -38642046 - AluJb SINE Alu -20 292 1 395 278 278 5 chr12 105641712 105641917 -38640572 - MIR SINE MIR 0 262 2 186 43 0 0 chr12 105642158 105642181 -38640308 + (T)n Simple_repeat Simple_repeat 1 23 0 414 0 0 0 chr12 105642560 105642606 -38639883 + (TA)n Simple_repeat Simple_repeat 2 47 0 741 206 86 13 chr12 105643355 105643588 -38638901 - HAL1 LINE L1 -1 2506 2257 1876 246 103 67 chr12 105643793 105644187 -38638302 - HAL1 LINE L1 -927 1580 1202 2249 102 0 13 chr12 105644187 105644492 -38637997 - AluSg SINE Alu -9 301 1 1876 246 103 67 chr12 105644492 105644698 -38637791 - HAL1 LINE L1 -1305 1202 1005 2280 109 0 0 chr12 105644698 105645000 -38637489 - AluSp SINE Alu -11 302 1 1876 246 103 67 chr12 105645000 105645465 -38637024 - HAL1 LINE L1 -1502 1005 475 2160 123 16 7 chr12 105645548 105645856 -38636633 - AluSx SINE Alu -1 311 1 1835 146 7 0 chr12 105645980 105646261 -38636228 + AluJo SINE Alu 3 285 -27 481 277 35 48 chr12 105646571 105646672 -38635817 - HAL1 LINE L1 -2171 336 235 2067 92 7 14 chr12 105646672 105646976 -38635513 - AluSc SINE Alu 0 302 1 481 277 35 48 chr12 105646976 105647104 -38635385 - HAL1 LINE L1 -2272 235 109 24 53 0 0 chr12 105647155 105647193 -38635296 + AT_rich Low_complexity Low_complexity 1 38 0 187 284 162 14 chr12 105647752 105647826 -38634663 + L2 LINE L2 3224 3308 -5 2488 59 0 7 chr12 105648008 105648311 -38634178 + AluY SINE Alu 1 301 -10 189 0 0 0 chr12 105648494 105648515 -38633974 + (CAA)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr12 105651398 105651427 -38631062 + AT_rich Low_complexity Low_complexity 1 29 0 477 358 62 59 chr12 105651766 105652188 -38630301 + L2 LINE L2 2844 3266 -6 437 277 136 23 chr12 105652259 105652479 -38630010 - MIR SINE MIR -1 261 17 310 217 211 30 chr12 105654117 105654283 -38628206 - L1 LINE L1 -1800 4346 4151 864 145 0 0 chr12 105654757 105654888 -38627601 + AluJb SINE Alu 169 299 -13 2446 90 0 0 chr12 105654983 105655344 -38627145 + AluSq SINE Alu 1 313 0 214 175 25 0 chr12 105655350 105655390 -38627099 - MIR SINE MIR -108 154 114 335 201 80 130 chr12 105655690 105655763 -38626726 - MIR SINE MIR -68 140 85 1922 147 6 16 chr12 105655763 105656077 -38626412 + AluSx SINE Alu 2 312 0 335 201 80 130 chr12 105656077 105656144 -38626345 - MIR SINE MIR -123 85 16 240 293 105 102 chr12 105656242 105656546 -38625943 - L2 LINE L2 0 3272 2968 2058 136 3 54 chr12 105656560 105656914 -38625575 - MER1B DNA MER1_type 0 337 2 1320 107 123 0 chr12 105657177 105657429 -38625060 + L1MA4 LINE L1 6012 6294 -6 706 229 18 41 chr12 105658358 105658528 -38623961 + MIR SINE MIR 2 167 -95 925 156 34 17 chr12 105658530 105658709 -38623780 - L1MC1 LINE L1 -63 6270 6089 22 35 0 0 chr12 105659206 105659235 -38623254 + AT_rich Low_complexity Low_complexity 1 29 0 2307 88 7 0 chr12 105660461 105660755 -38621734 - AluSc SINE Alu -13 296 1 1976 142 3 3 chr12 105660775 105661057 -38621432 - AluJo SINE Alu -30 282 1 225 349 0 0 chr12 105661524 105661590 -38620899 + CT-rich Low_complexity Low_complexity 1 66 0 795 160 8 0 chr12 105662291 105662416 -38620073 + FLAM_A SINE Alu 1 126 -7 21 36 0 0 chr12 105662597 105662625 -38619864 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr12 105662693 105662736 -38619753 + AT_rich Low_complexity Low_complexity 1 43 0 2303 245 172 11 chr12 105663002 105664098 -38618391 - L2 LINE L2 0 3313 2028 204 254 109 18 chr12 105664196 105664251 -38618238 - L2 LINE L2 -24 3289 3230 303 263 79 0 chr12 105664313 105664427 -38618062 + MIR SINE MIR 121 243 -19 235 289 215 16 chr12 105664789 105664910 -38617579 + L2 LINE L2 3168 3312 -1 231 243 135 14 chr12 105664933 105665007 -38617482 - L3 LINE CR1 -1047 530 448 207 302 0 0 chr12 105665939 105665982 -38616507 - MIR SINE MIR -124 84 42 421 290 130 15 chr12 105666281 105666481 -38616008 - MIR SINE MIR -6 256 34 256 253 172 0 chr12 105667007 105667094 -38615395 + MIR SINE MIR 106 207 -55 211 270 32 16 chr12 105667488 105667551 -38614938 + MIR SINE MIR 48 111 -151 281 167 0 0 chr12 105667577 105667625 -38614864 + MER5B DNA MER1_type 128 175 -3 897 254 55 94 chr12 105667961 105668492 -38613997 + MLT1J LTR MaLR 1 510 -1 722 292 189 0 chr12 105668678 105668959 -38613530 + MER102b DNA MER1_type 4 337 -4 21 0 0 0 chr12 105672357 105672378 -38610111 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr12 105672700 105672724 -38609765 + (T)n Simple_repeat Simple_repeat 1 24 0 309 248 182 42 chr12 105673313 105673527 -38608962 - L2 LINE L2 -2 3270 3027 * 885 271 162 42 chr12 105673499 105674064 -38608425 + L2 LINE L2 2684 3310 -3 272 321 37 18 chr12 105674073 105674182 -38608307 - L2 LINE L2 -235 3037 2927 6034 131 16 29 chr12 105674189 105675522 -38606967 + L1MA4 LINE L1 4938 6253 -47 586 272 171 59 chr12 105676341 105676430 -38606059 - L2 LINE L2 -6 3307 3229 2227 63 0 30 chr12 105676430 105676731 -38605758 - AluY SINE Alu -19 292 1 586 272 171 59 chr12 105676731 105677016 -38605473 - L2 LINE L2 -84 3229 2891 909 305 56 5 chr12 105677106 105677500 -38604989 - L2 LINE L2 -673 2641 2228 299 330 50 18 chr12 105677525 105677743 -38604746 - L2 LINE L2 -2429 885 661 3455 119 38 46 chr12 105679044 105679580 -38602909 + MER4A LTR ERV1 1 533 -67 2270 90 0 3 chr12 105679580 105679881 -38602608 - AluSg SINE Alu -10 300 1 3455 119 38 46 chr12 105679881 105679949 -38602540 + MER4A LTR ERV1 533 600 0 2100 119 7 0 chr12 105680748 105681050 -38601439 - AluSp SINE Alu -9 304 1 230 252 175 39 chr12 105681802 105681905 -38600584 + L3 LINE CR1 1460 1576 -1 253 206 0 110 chr12 105682773 105682846 -38599643 + L2 LINE L2 3208 3272 0 540 300 75 9 chr12 105682901 105683128 -38599361 - MIR SINE MIR -5 257 16 640 286 90 16 chr12 105683205 105683393 -38599096 + MLT1G LTR MaLR 42 243 -312 366 106 0 0 chr12 105683393 105683440 -38599049 + AluSx SINE Alu 1 47 -254 2819 81 20 0 chr12 105683440 105683797 -38598692 + THE1B LTR MaLR 1 364 0 1545 111 8 60 chr12 105683797 105684049 -38598440 + AluSx SINE Alu 43 281 -31 2242 90 0 3 chr12 105684052 105684353 -38598136 - AluSq SINE Alu -13 300 1 838 210 88 120 chr12 105684385 105684761 -38597728 + MLT1G LTR MaLR 227 590 0 255 125 0 0 chr12 105685243 105685283 -38597206 + (TG)n Simple_repeat Simple_repeat 1 40 0 302 154 26 77 chr12 105685327 105685405 -38597084 + MIR SINE MIR 111 184 -78 641 272 78 33 chr12 105685433 105685676 -38596813 - MIR SINE MIR 0 262 9 201 74 0 0 chr12 105686035 105686062 -38596427 + (TTCTC)n Simple_repeat Simple_repeat 2 28 0 1824 145 19 19 chr12 105686095 105686405 -38596084 - AluSx SINE Alu -2 310 1 200 364 15 0 chr12 105686628 105686694 -38595795 + L2 LINE L2 3200 3266 -6 1564 120 4 4 chr12 105687070 105687336 -38595153 + AluSx SINE Alu 49 314 0 229 263 105 0 chr12 105687387 105687482 -38595007 + HAL1b LINE L1 1188 1292 -56 1227 171 0 5 chr12 105687596 105687806 -38594683 - AluJb SINE Alu -19 293 85 533 299 117 14 chr12 105688297 105688511 -38593978 - MIR SINE MIR -24 238 3 462 240 99 128 chr12 105689921 105690233 -38592256 + L2 LINE L2 2965 3267 -5 354 268 65 14 chr12 105690863 105691001 -38591488 - L1ME4a LINE L1 -35 6086 5942 2102 114 0 3 chr12 105691555 105691852 -38590637 - AluSx SINE Alu -16 296 1 235 333 26 13 chr12 105692191 105692269 -38590220 + L2 LINE L2 3108 3186 -86 562 277 126 22 chr12 105692461 105692591 -38589898 - MIR SINE MIR -6 256 141 2000 131 3 0 chr12 105692591 105692888 -38589601 - AluSx SINE Alu -14 298 1 1762 109 3 118 chr12 105692888 105693219 -38589270 - AluSx SINE Alu -19 293 1 562 277 126 22 chr12 105693219 105693318 -38589171 - MIR SINE MIR -120 142 2 1624 147 29 46 chr12 105694137 105694444 -38588045 - AluJb SINE Alu -10 302 1 234 0 0 0 chr12 105695751 105695777 -38586712 + (A)n Simple_repeat Simple_repeat 1 26 0 2458 53 0 0 chr12 105695777 105696077 -38586412 + AluY SINE Alu 1 300 -11 261 0 0 0 chr12 105696490 105696519 -38585970 + (T)n Simple_repeat Simple_repeat 1 29 0 1478 190 17 14 chr12 105698503 105698793 -38583696 - AluJo SINE Alu -21 291 1 1707 156 0 33 chr12 105698802 105699103 -38583386 - AluJb SINE Alu -21 291 1 2351 149 0 30 chr12 105699473 105699710 -38582779 + MLT1B LTR MaLR 1 223 -167 2841 87 0 6 chr12 105699710 105700076 -38582413 - THE1B LTR MaLR 0 364 1 2351 149 0 30 chr12 105700076 105700240 -38582249 + MLT1B LTR MaLR 223 390 0 2230 86 0 7 chr12 105700779 105701080 -38581409 - AluSx SINE Alu -13 299 1 260 356 104 0 chr12 105701484 105701619 -38580870 - MIR SINE MIR -94 168 20 1703 154 22 26 chr12 105702764 105703076 -38579413 - AluJb SINE Alu -1 311 1 1652 176 3 10 chr12 105704241 105704542 -38577947 + AluJo SINE Alu 9 307 -5 1613 74 5 0 chr12 105705519 105705722 -38576767 + AluSx SINE Alu 1 204 -108 245 267 0 0 chr12 105708250 105708310 -38574179 + (TATG)n Simple_repeat Simple_repeat 3 62 0 286 60 20 20 chr12 105708638 105708688 -38573801 + (CA)n Simple_repeat Simple_repeat 2 51 0 476 223 149 0 chr12 105710580 105710728 -38571761 + MER117 DNA MER1_type 1 170 -27 349 328 196 20 chr12 105710898 105711749 -38570740 - L2 LINE L2 -216 3056 1981 2105 131 0 0 chr12 105712512 105712824 -38569665 + AluSx SINE Alu 1 312 0 190 316 112 74 chr12 105714574 105714789 -38567700 + L2 LINE L2 3000 3222 -50 348 253 13 0 chr12 105714794 105714873 -38567616 - MER116 DNA Mariner 0 80 1 1801 126 4 4 chr12 105714962 105715240 -38567249 + AluSx SINE Alu 1 278 -34 229 163 0 0 chr12 105715240 105715283 -38567206 + AluSx SINE Alu 257 299 -1 883 83 0 17 chr12 105715447 105715567 -38566922 + AluSq/x SINE Alu 1 118 -194 209 189 0 0 chr12 105715567 105715604 -38566885 + A-rich Low_complexity Low_complexity 1 37 0 324 277 254 8 chr12 105715655 105715785 -38566704 + L3b LINE CR1 1323 1484 -99 288 204 19 0 chr12 105716004 105716058 -38566431 - MER5A DNA MER1_type -134 55 1 1964 127 26 13 chr12 105716385 105716692 -38565797 + AluSx SINE Alu 1 311 -1 1125 267 55 38 chr12 105716831 105717408 -38565081 + L1ME4a LINE L1 5524 6110 -11 463 265 156 25 chr12 105717582 105717804 -38564685 + MIR SINE MIR 7 262 0 757 178 0 8 chr12 105717818 105717947 -38564542 - FLAM_C SINE Alu -5 128 1 2254 77 49 0 chr12 105718389 105718675 -38563814 + AluSg SINE Alu 1 300 -10 964 210 6 0 chr12 105718879 105719046 -38563443 - FAM SINE Alu -7 168 1 5432 123 12 43 chr12 105719644 105720665 -38561824 - L1MA6 LINE L1 -10 6290 5302 1585 151 44 0 chr12 105720664 105720982 -38561507 + L1MA6 LINE L1 4985 5316 -830 * 2613 70 0 0 chr12 105721434 105721747 -38560742 + AluSq SINE Alu 1 313 0 218 0 94 0 chr12 105722999 105723031 -38559458 + A-rich Low_complexity Low_complexity 2 36 0 706 228 89 0 chr12 105723098 105723256 -38559233 + MIR SINE MIR 34 205 -57 304 305 24 12 chr12 105723397 105723479 -38559010 + L2 LINE L2 3086 3168 -104 245 385 0 0 chr12 105724510 105724593 -38557896 - MIR3 SINE MIR -15 193 111 762 243 0 11 chr12 105724594 105724774 -38557715 + MIR SINE MIR 1 175 -33 2181 104 10 7 chr12 105725448 105725745 -38556744 - AluSx SINE Alu -14 298 1 25 0 0 0 chr12 105725803 105725828 -38556661 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr12 105726004 105726034 -38556455 + AT_rich Low_complexity Low_complexity 1 30 0 277 41 82 0 chr12 105727845 105727894 -38554595 + (CTAAA)n Simple_repeat Simple_repeat 3 55 0 333 0 0 0 chr12 105729919 105729956 -38552533 + (T)n Simple_repeat Simple_repeat 1 37 0 294 87 0 0 chr12 105730199 105730245 -38552244 - L1MA4A LINE L1 -25 6278 6233 22 0 0 0 chr12 105732596 105732618 -38549871 + AT_rich Low_complexity Low_complexity 1 22 0 1965 153 0 3 chr12 105733203 105733497 -38548992 - AluSx SINE Alu -19 293 1 24 77 0 0 chr12 105733617 105733669 -38548820 + AT_rich Low_complexity Low_complexity 1 52 0 186 133 0 0 chr12 105734824 105734854 -38547635 + (TA)n Simple_repeat Simple_repeat 2 31 0 350 189 44 56 chr12 105736823 105736913 -38545576 - MIR3 SINE MIR -51 157 69 5513 133 31 13 chr12 105737033 105737937 -38544552 + MER49 LTR ERV1 4 923 0 1737 152 22 82 chr12 105739453 105739821 -38542668 + MER7A DNA MER2_type 3 346 0 1727 154 0 15 chr12 105739902 105740174 -38542315 - AluSx SINE Alu -17 295 28 21 0 0 0 chr12 105740175 105740196 -38542293 + AT_rich Low_complexity Low_complexity 1 21 0 1682 177 13 29 chr12 105740530 105740841 -38541648 - AluJo SINE Alu -6 306 1 1994 125 3 61 chr12 105740852 105741179 -38541310 - AluSx SINE Alu -4 308 1 2285 105 3 6 chr12 105741191 105741504 -38540985 - AluSx SINE Alu 0 312 1 197 250 0 78 chr12 105741518 105741582 -38540907 + MIR SINE MIR 121 179 -83 1393 254 275 33 chr12 105742430 105743562 -38538927 + L2 LINE L2 1616 3068 -245 1951 129 22 0 chr12 105743612 105743916 -38538573 - AluSx SINE Alu 0 310 1 191 213 43 0 chr12 105743981 105744028 -38538461 - L2 LINE L2 -3 3310 3262 564 140 0 0 chr12 105745462 105745555 -38536934 + (TCCC)n Simple_repeat Simple_repeat 4 96 0 323 338 40 76 chr12 105746276 105746501 -38535988 + L3 LINE CR1 571 787 -790 838 327 86 19 chr12 105746645 105747064 -38535425 + L3 LINE CR1 1128 1574 -3 409 308 15 0 chr12 105747521 105747651 -38534838 + MIR SINE MIR 8 139 -123 333 328 55 0 chr12 105748373 105748501 -38533988 - MIR SINE MIR -71 191 57 213 119 0 0 chr12 105748808 105748850 -38533639 + (TC)n Simple_repeat Simple_repeat 1 42 0 1961 150 3 0 chr12 105748939 105749232 -38533257 - AluSx SINE Alu -18 294 1 388 207 275 36 chr12 105749318 105749511 -38532978 + MLT1K LTR MaLR 348 586 -2 207 194 0 0 chr12 105749617 105749653 -38532836 + GA-rich Low_complexity Low_complexity 1 36 0 1985 123 0 7 chr12 105750824 105751116 -38531373 - AluSx SINE Alu -22 290 1 312 318 91 7 chr12 105751842 105751996 -38530493 - MIR SINE MIR -54 208 42 22 35 0 0 chr12 105752311 105752340 -38530149 + AT_rich Low_complexity Low_complexity 1 29 0 255 216 80 11 chr12 105752372 105752508 -38529981 + MIR SINE MIR 20 203 -59 210 308 15 0 chr12 105758164 105758229 -38524260 + CT-rich Low_complexity Low_complexity 1 66 0 2420 82 0 0 chr12 105758265 105758571 -38523918 - AluY SINE Alu -5 306 1 1305 140 0 15 chr12 105759100 105759300 -38523189 - AluSg/x SINE Alu -39 273 77 508 353 57 35 chr12 105759819 105760275 -38522214 + L2 LINE L2 2848 3313 0 368 328 97 11 chr12 105760462 105760648 -38521841 - MIR SINE MIR -40 222 21 2355 126 5 11 chr12 105760908 105761282 -38521207 - L1PA16 LINE L1 -1 6165 5794 231 284 46 55 chr12 105761476 105761585 -38520904 - L3b LINE CR1 -355 1228 1121 270 0 0 0 chr12 105762422 105762452 -38520037 + (TTA)n Simple_repeat Simple_repeat 2 31 0 351 286 94 14 chr12 105762528 105762681 -38519808 + MIR SINE MIR 66 233 -29 197 159 23 0 chr12 105763033 105763077 -38519412 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 440 278 71 38 chr12 105763239 105763448 -38519041 - MIR SINE MIR -32 230 15 2361 92 0 19 chr12 105764374 105764688 -38517801 + AluY SINE Alu 1 308 -3 297 140 0 0 chr12 105766670 105766727 -38515762 + (TATG)n Simple_repeat Simple_repeat 2 58 0 2428 241 22 18 chr12 105769200 105769918 -38512571 + L1ME1 LINE L1 5441 6161 -5 2126 175 40 37 chr12 105770449 105770905 -38511584 + MSTB2 LTR MaLR 1 457 0 710 249 54 29 chr12 105771415 105771656 -38510833 + MIR SINE MIR 2 248 -14 1999 249 48 29 chr12 105771811 105772401 -38510088 + L3 LINE CR1 332 932 -645 351 276 164 26 chr12 105772487 105772639 -38509850 - MIR SINE MIR -70 192 20 191 318 19 28 chr12 105772662 105772769 -38509720 + MIR SINE MIR 157 262 0 24 32 0 0 chr12 105773037 105773068 -38509421 + AT_rich Low_complexity Low_complexity 1 31 0 312 222 0 0 chr12 105773289 105773361 -38509128 + (CATA)n Simple_repeat Simple_repeat 1 72 0 250 313 12 25 chr12 105774008 105774088 -38508401 + L2 LINE L2 2929 3007 -265 3216 184 21 44 chr12 105774246 105774922 -38507567 - L1MA10 LINE L1 0 6334 5675 2241 117 0 0 chr12 105774922 105775220 -38507269 - AluSx SINE Alu -14 298 1 3216 184 21 44 chr12 105775220 105775297 -38507192 - L1MA10 LINE L1 -659 5675 5598 1251 126 0 6 chr12 105775884 105776058 -38506431 - AluSg/x SINE Alu -13 299 127 2379 92 0 0 chr12 105776068 105776363 -38506126 - AluSx SINE Alu -17 295 1 2524 68 0 0 chr12 105777784 105778091 -38504398 - AluY SINE Alu -4 307 1 365 350 109 24 chr12 105778458 105778789 -38503700 - L2 LINE L2 0 3272 2914 241 286 0 57 chr12 105778946 105779016 -38503473 + MIR SINE MIR 184 249 -13 2305 99 0 0 chr12 105779082 105779375 -38503114 + AluSc SINE Alu 15 307 -2 361 281 12 0 chr12 105779522 105779604 -38502885 + L2 LINE L2 3231 3313 0 282 266 208 29 chr12 105779900 105780073 -38502416 - MIR SINE MIR -39 223 20 561 312 104 40 chr12 105780870 105781197 -38501292 + L2 LINE L2 2965 3312 -1 181 213 43 21 chr12 105781824 105781871 -38500618 - MIR SINE MIR -115 147 100 2822 13 0 0 chr12 105782202 105782509 -38499980 + AluYb8 SINE Alu 1 307 -11 209 238 60 95 chr12 105782834 105782918 -38499571 + L2 LINE L2 3232 3312 -1 514 263 75 43 chr12 105783651 105783837 -38498652 + MIR SINE MIR 13 204 -58 191 380 81 46 chr12 105784377 105784661 -38497828 - L2 LINE L2 -87 3185 2892 * 211 205 77 123 chr12 105784650 105784845 -38497644 - L2 LINE L2 -1624 1690 1505 255 61 0 0 chr12 105784967 105785000 -38497489 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 1737 168 13 7 chr12 105785661 105785964 -38496525 - AluJb SINE Alu -7 305 1 669 94 0 0 chr12 105787912 105788008 -38494481 - L1PA10 LINE L1 -227 5941 5846 1393 108 33 0 chr12 105788008 105788216 -38494273 + L1PA10 LINE L1 5950 6168 0 250 329 161 13 chr12 105789031 105789186 -38493303 - MIR3 SINE MIR -11 197 20 927 278 12 24 chr12 105789538 105789793 -38492696 + MIR SINE MIR 11 262 0 1245 103 47 23 chr12 105791483 105791697 -38490792 - L1MA4A LINE L1 -3 6300 6082 1070 230 47 16 chr12 105791700 105792062 -38490427 + MLT2D LTR ERVL 4 389 -8 1086 281 12 60 chr12 105792729 105793131 -38489358 - L2 LINE L2 0 3313 2931 1494 167 78 33 chr12 105793131 105793481 -38489008 - MLT1A1 LTR MaLR 0 365 6 203 140 0 120 chr12 105793512 105793562 -38488927 - L2 LINE L2 -377 2937 2894 370 361 82 0 chr12 105793608 105793791 -38488698 + L2 LINE L2 2560 2757 -557 2280 87 3 7 chr12 105794904 105795203 -38487286 + AluY SINE Alu 2 299 -12 284 268 89 48 chr12 105796175 105796343 -38486146 - MIR SINE MIR -4 258 84 349 287 41 16 chr12 105796473 105796595 -38485894 + L2 LINE L2 3189 3313 0 225 196 0 0 chr12 105797006 105797052 -38485437 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 444 258 19 75 chr12 105797394 105797553 -38484936 + MIR SINE MIR 113 262 0 305 311 19 10 chr12 105798759 105798862 -38483627 - MIR SINE MIR -65 143 40 1619 131 40 131 chr12 105799474 105799581 -38482908 + MLT1B LTR MaLR 3 118 -272 2071 149 0 0 chr12 105799581 105799877 -38482612 + AluSx SINE Alu 1 296 -16 1619 131 40 131 chr12 105799877 105800196 -38482293 + MLT1B LTR MaLR 118 390 0 213 280 0 0 chr12 105800642 105800692 -38481797 + L2 LINE L2 3223 3272 0 313 354 26 31 chr12 105801568 105801763 -38480726 + L3 LINE CR1 283 476 -1101 301 332 157 32 chr12 105802419 105802795 -38479694 + L2 LINE L2 2458 2880 -434 240 303 0 13 chr12 105803394 105803470 -38479019 + L2 LINE L2 2684 2758 -556 291 337 36 68 chr12 105803502 105803751 -38478738 + L2 LINE L2 2851 3091 -181 207 333 25 12 chr12 105803843 105803924 -38478565 + L2 LINE L2 3187 3268 -4 190 325 50 50 chr12 105805231 105805311 -38477178 - L2 LINE L2 -50 3222 3143 501 151 0 0 chr12 105805626 105805730 -38476759 + AluSg/x SINE Alu 211 314 0 194 352 38 38 chr12 105805785 105805890 -38476599 + L2 LINE L2 3116 3220 -52 244 318 0 0 chr12 105806324 105806387 -38476102 - MER91 DNA MER1_type -77 63 1 557 246 65 55 chr12 105806542 105806758 -38475731 - MIR SINE MIR 0 262 45 2622 48 0 6 chr12 105807809 105808122 -38474367 + AluY SINE Alu 1 311 0 207 0 0 0 chr12 105808125 105808148 -38474341 + (CAA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chr12 105808322 105808347 -38474142 + AT_rich Low_complexity Low_complexity 1 25 0 238 271 29 0 chr12 105811094 105811164 -38471325 + MIR SINE MIR 191 262 0 1041 245 89 55 chr12 105811768 105811842 -38470647 + L2 LINE L2 2154 2224 -1090 2856 13 0 0 chr12 105811842 105812154 -38470335 + AluYb8 SINE Alu 1 312 -6 1041 245 89 55 chr12 105812154 105812462 -38470027 + L2 LINE L2 2224 2549 -765 226 177 16 16 chr12 105813316 105813378 -38469111 + GA-rich Low_complexity Low_complexity 4 65 0 324 269 34 27 chr12 105813763 105813912 -38468577 + HAL1b LINE L1 71 220 -1128 1495 242 108 33 chr12 105813917 105814209 -38468280 + HAL1b LINE L1 255 524 -824 240 35 0 0 chr12 105814209 105814238 -38468251 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1495 242 108 33 chr12 105814238 105814585 -38467904 + HAL1b LINE L1 524 942 -406 541 225 14 56 chr12 105814588 105814730 -38467759 + MER69 DNA AcHobo 3 138 -1088 301 98 98 16 chr12 105814735 105814796 -38467693 + MER69 DNA AcHobo 2461 2526 0 947 237 44 44 chr12 105814797 105814942 -38467547 + HAL1b LINE L1 937 1081 -267 1866 140 7 18 chr12 105814942 105815227 -38467262 - AluSx SINE Alu -20 292 11 947 237 44 44 chr12 105815227 105815491 -38466998 + HAL1b LINE L1 1080 1346 -2 300 225 56 22 chr12 105815519 105815608 -38466881 + L1ME4a LINE L1 5989 6080 -41 867 311 70 30 chr12 105815619 105816329 -38466160 + L2 LINE L2 2527 3313 0 2077 133 7 0 chr12 105816668 105816970 -38465519 - AluSq SINE Alu -9 304 1 205 284 179 45 chr12 105820774 105820908 -38461581 - L3b LINE CR1 -115 1468 1317 252 214 0 34 chr12 105822151 105822283 -38460206 + C-rich Low_complexity Low_complexity 1 127 0 204 40 0 0 chr12 105822309 105822334 -38460155 + (CGG)n Simple_repeat Simple_repeat 2 26 0 442 192 177 15 chr12 105823652 105823782 -38458707 - MIR SINE MIR 0 262 112 4977 131 43 0 chr12 105824564 105825532 -38456957 + L1PB4 LINE L1 5149 6155 -1 386 310 43 27 chr12 105826454 105826641 -38455848 + MIR SINE MIR 3 192 -70 1296 200 71 49 chr12 105826712 105827077 -38455412 + MLT2C1 LTR ERVL 25 397 0 209 276 17 0 chr12 105827078 105827136 -38455353 + MIR SINE MIR 199 257 -5 252 311 83 93 chr12 105828205 105828494 -38453995 + L2 LINE L2 2986 3271 -1 326 308 99 28 chr12 105828498 105828709 -38453780 - L2 LINE L2 -960 2354 2129 636 297 61 22 chr12 105829891 105830120 -38452369 + MIR SINE MIR 7 244 -18 1021 222 140 57 chr12 105830660 105831066 -38451423 + MLT1K LTR MaLR 143 582 -6 600 309 36 32 chr12 105831074 105831294 -38451195 - L3 LINE CR1 -28 1549 1329 61 45 0 0 chr12 105831364 105831453 -38451036 + AT_rich Low_complexity Low_complexity 1 89 0 226 233 171 85 chr12 105832193 105832322 -38450167 - MIR SINE MIR -122 140 1 542 170 16 54 chr12 105832395 105832538 -38449951 - MIR SINE MIR -66 142 43 1949 162 0 7 chr12 105832812 105833121 -38449368 + AluJo SINE Alu 1 307 -5 1533 114 74 34 chr12 105834176 105834330 -38448159 - L1MA9 LINE L1 0 6312 6166 408 40 0 0 chr12 105834330 105834380 -38448109 + (TG)n Simple_repeat Simple_repeat 1 50 0 1533 114 74 34 chr12 105834380 105834522 -38447967 - L1MA9 LINE L1 -146 6166 6004 892 204 119 34 chr12 105834567 105834836 -38447653 + MER45C DNA AcHobo 55 346 -607 647 289 72 59 chr12 105834869 105835001 -38447488 + MER45C DNA AcHobo 324 453 -500 2321 111 19 35 chr12 105835001 105835371 -38447118 + THE1B LTR MaLR 1 364 0 647 289 72 59 chr12 105835371 105835542 -38446947 + MER45C DNA AcHobo 453 631 -322 279 226 0 0 chr12 105835540 105835593 -38446896 + MER45C DNA AcHobo 901 953 0 * 235 286 0 13 chr12 105835700 105835777 -38446712 - MIR SINE MIR -29 233 158 433 241 46 0 chr12 105835787 105835895 -38446594 + MIR SINE MIR 92 204 -58 428 258 25 8 chr12 105836663 105836783 -38445706 - MIR SINE MIR -85 177 56 821 275 64 8 chr12 105839364 105839600 -38442889 - MIR SINE MIR 0 262 14 282 283 138 106 chr12 105839696 105839979 -38442510 + L2 LINE L2 2968 3259 -13 278 250 0 98 chr12 105840313 105840425 -38442064 + MER102b DNA MER1_type 232 332 -9 1356 254 187 50 chr12 105840450 105840953 -38441536 + L2 LINE L2 1750 2183 -1131 1881 122 0 11 chr12 105840953 105841216 -38441273 - AluSx SINE Alu -13 299 40 1356 254 187 50 chr12 105841216 105841346 -38441143 + L2 LINE L2 2183 2294 -1020 2256 151 78 5 chr12 105841346 105841743 -38440746 + MSTB LTR MaLR 1 426 0 1356 254 187 50 chr12 105841743 105841794 -38440695 + L2 LINE L2 2294 2529 -785 1314 235 25 77 chr12 105841794 105842360 -38440129 + L2 LINE L2 2745 3267 -46 1261 163 92 102 chr12 105842368 105842686 -38439803 + MLT1B LTR MaLR 1 316 -74 2021 144 0 3 chr12 105842686 105842977 -38439512 - AluSx SINE Alu -22 290 1 1261 163 92 102 chr12 105842977 105843051 -38439438 + MLT1B LTR MaLR 316 389 -1 313 318 27 9 chr12 105843109 105843219 -38439270 - MIR SINE MIR -75 133 22 244 288 129 38 chr12 105844064 105844196 -38438293 + MIR SINE MIR 104 247 -15 * 594 276 92 21 chr12 105844194 105844287 -38438202 - MIR SINE MIR 0 262 177 1631 159 0 0 chr12 105844287 105844526 -38437963 - AluJb SINE Alu -14 298 60 594 276 92 21 chr12 105844526 105844671 -38437818 - MIR SINE MIR -85 177 7 215 289 167 11 chr12 105845210 105845300 -38437189 - L2 LINE L2 0 3272 3169 437 309 117 42 chr12 105845799 105846548 -38435941 - L1ME LINE L1 -381 5781 4974 615 187 2 9 chr12 105847306 105847442 -38435047 - MLT1B LTR MaLR 0 390 243 542 161 0 0 chr12 105847429 105847522 -38434967 - MLT1C LTR MaLR -168 299 207 * 2356 93 51 23 chr12 105847672 105848026 -38434463 - THE1B LTR MaLR 0 364 1 338 293 19 9 chr12 105848404 105848510 -38433979 + CT-rich Low_complexity Low_complexity 3 109 0 238 326 38 91 chr12 105848517 105848649 -38433840 - L2 LINE L2 -1 3271 3147 2357 97 0 0 chr12 105849823 105850123 -38432366 - AluSx SINE Alu -12 300 1 1843 175 40 70 chr12 105850294 105850739 -38431750 + MSTB1 LTR MaLR 1 432 0 207 244 205 0 chr12 105852722 105852800 -38429689 + L2 LINE L2 2165 2258 -1056 5889 228 52 21 chr12 105852806 105854829 -38427660 + L1MB7 LINE L1 69 2165 -4481 28 48 0 0 chr12 105854858 105854900 -38427589 + AT_rich Low_complexity Low_complexity 1 42 0 474 238 62 31 chr12 105854913 105855140 -38427349 + L1MB7 LINE L1 2290 2523 -4123 7513 210 37 19 chr12 105855150 105856366 -38426123 + L1MB7 LINE L1 3527 4719 -1945 279 0 0 0 chr12 105856366 105856397 -38426092 + (CA)n Simple_repeat Simple_repeat 2 32 0 7513 210 37 19 chr12 105856397 105858237 -38424252 + L1MB7 LINE L1 4719 6662 -2 277 238 48 29 chr12 105860053 105860158 -38422331 + MER103 DNA DNA 6 112 -54 7982 175 32 34 chr12 105860292 105862955 -38419534 - L1MB1 LINE L1 -1 6167 3496 238 285 56 73 chr12 105863077 105863256 -38419233 + MIR SINE MIR 87 262 0 26 0 0 0 chr12 105863316 105863342 -38419147 + AT_rich Low_complexity Low_complexity 1 26 0 364 298 106 43 chr12 105863458 105863646 -38418843 - MIR SINE MIR -59 203 4 2331 89 7 0 chr12 105863671 105863962 -38418527 + AluSc SINE Alu 1 293 -16 209 359 39 0 chr12 105864268 105864346 -38418143 + MIR SINE MIR 52 132 -76 257 256 109 36 chr12 105864524 105864661 -38417828 + Charlie7 DNA MER1_type 2449 2595 -17 265 361 89 47 chr12 105864718 105865056 -38417433 + L2 LINE L2 2816 3175 -97 1705 164 52 25 chr12 105865056 105865421 -38417068 - THE1C LTR MaLR 0 375 1 265 361 89 47 chr12 105865421 105865486 -38417003 + L2 LINE L2 3175 3236 -36 695 255 0 7 chr12 105865693 105865838 -38416651 - MER5B DNA MER1_type -34 144 1 545 294 160 11 chr12 105867772 105868047 -38414442 + L2 LINE L2 2998 3313 0 3282 183 12 17 chr12 105868308 105868958 -38413531 + MER82 DNA MER2_type 7 653 0 2156 118 0 0 chr12 105869285 105869564 -38412925 + AluSg SINE Alu 1 279 -31 606 305 20 52 chr12 105869809 105870058 -38412431 + L2 LINE L2 3030 3270 -2 1311 240 39 51 chr12 105870662 105871148 -38411341 - MLT1D LTR MaLR 0 505 24 2156 160 70 8 chr12 105871148 105871342 -38411147 + MSTB LTR MaLR 1 181 -245 2302 105 0 0 chr12 105871342 105871646 -38410843 + AluSq SINE Alu 1 304 -9 2156 160 70 8 chr12 105871646 105871852 -38410637 + MSTB LTR MaLR 181 426 0 1311 240 39 51 chr12 105871852 105871874 -38410615 - MLT1D LTR MaLR -481 24 3 2025 154 3 0 chr12 105872538 105872849 -38409640 + AluJb SINE Alu 1 312 0 365 307 132 27 chr12 105873731 105873988 -38408501 - L2 LINE L2 -2 3311 3028 745 141 0 31 chr12 105873990 105874118 -38408371 + FLAM_C SINE Alu 13 136 -7 1660 112 4 12 chr12 105874259 105874509 -38407980 - AluSx SINE Alu -63 249 2 22 0 0 0 chr12 105875007 105875029 -38407460 + AT_rich Low_complexity Low_complexity 1 22 0 414 247 182 26 chr12 105875079 105875233 -38407256 - MER5A DNA MER1_type -1 188 11 774 278 92 22 chr12 105875505 105875905 -38406584 - L1ME3A LINE L1 -236 5934 5507 1634 217 89 44 chr12 105875905 105876451 -38406038 - MLT1E2 LTR MaLR 0 626 5 313 252 43 29 chr12 105876472 105876611 -38405878 - MLT1E2-int LTR MaLR -8 1727 1587 612 273 26 109 chr12 105876611 105877033 -38405456 - MLT1E2-int LTR MaLR -293 1078 692 1363 239 18 0 chr12 105877237 105877572 -38404917 - MLT1E2-int LTR MaLR -767 604 264 1822 158 7 4 chr12 105877615 105877888 -38404601 + AluJo SINE Alu 11 284 -28 1060 205 22 27 chr12 105877984 105878208 -38404281 - AluJo SINE Alu -4 308 86 2273 263 70 28 chr12 105878231 105879489 -38403000 - L1MCc LINE L1 -4122 3000 1452 1712 182 10 23 chr12 105879489 105879796 -38402693 - AluJb SINE Alu -9 303 1 2273 263 70 28 chr12 105879796 105880032 -38402457 - L1MCc LINE L1 -5670 1452 1227 29 78 0 0 chr12 105880148 105880212 -38402277 + AT_rich Low_complexity Low_complexity 1 64 0 385 335 101 0 chr12 105880635 105880823 -38401666 + MLT1K LTR MaLR 311 517 -71 21 36 0 0 chr12 105880833 105880861 -38401628 + AT_rich Low_complexity Low_complexity 1 28 0 5410 124 21 22 chr12 105880867 105882534 -38399955 - L1MA8 LINE L1 -7 6284 4613 543 148 0 0 chr12 105882534 105882615 -38399874 + AluJ/FLAM SINE Alu 1 81 -231 942 220 0 11 chr12 105882615 105882922 -38399567 + AluJo/FRAM SINE Alu 129 433 0 1628 133 38 0 chr12 105882926 105883219 -38399270 - L1MA8 LINE L1 -1527 4619 4316 829 246 82 12 chr12 105884276 105884520 -38397969 - MIR SINE MIR 0 262 2 849 295 88 42 chr12 105884801 105885010 -38397479 + L2 LINE L2 2811 3009 -304 1727 123 65 86 chr12 105885010 105885393 -38397096 + THE1C LTR MaLR 1 375 0 849 295 88 42 chr12 105885393 105885590 -38396899 + L2 LINE L2 3009 3236 -77 2010 146 0 3 chr12 105885863 105886165 -38396324 - AluSx SINE Alu -11 301 1 21 36 0 0 chr12 105886670 105886698 -38395791 + AT_rich Low_complexity Low_complexity 1 28 0 2295 157 5 20 chr12 105886979 105887030 -38395459 - MLT1B LTR MaLR 0 390 340 2082 102 0 11 chr12 105887030 105887305 -38395184 + AluSx SINE Alu 1 272 -40 2295 157 5 20 chr12 105887305 105887648 -38394841 - MLT1B LTR MaLR -50 340 2 441 246 60 8 chr12 105887871 105888005 -38394484 - MIR SINE MIR 0 262 122 1040 88 0 0 chr12 105888005 105888130 -38394359 + AluSq/x SINE Alu 1 125 -187 22 0 0 0 chr12 105888130 105888152 -38394337 + AT_rich Low_complexity Low_complexity 1 22 0 277 350 21 0 chr12 105888154 105888251 -38394238 - MIR SINE MIR -132 130 32 1599 243 101 24 chr12 105888287 105888913 -38393576 + L1MEc LINE L1 36 709 -5687 2492 75 3 3 chr12 105889231 105889539 -38392950 + AluY SINE Alu 1 308 -3 2160 80 45 3 chr12 105890197 105890483 -38392006 - AluSc SINE Alu -11 298 1 225 275 14 14 chr12 105892868 105892937 -38389552 + GA-rich Low_complexity Low_complexity 3 71 0 2381 103 3 0 chr12 105893050 105893361 -38389128 - AluSx SINE Alu 0 312 1 3996 169 63 40 chr12 105893395 105893924 -38388565 - L1MB1 LINE L1 -7 6161 5645 1854 152 27 7 chr12 105893924 105894221 -38388268 - AluJb SINE Alu -9 303 1 3996 169 63 40 chr12 105894221 105894304 -38388185 - L1MB1 LINE L1 -523 5645 5565 3956 180 32 10 chr12 105894304 105895115 -38387374 - L1MA9 LINE L1 0 6312 5484 3996 169 63 40 chr12 105895115 105895157 -38387332 - L1MB1 LINE L1 -603 5565 5525 699 164 53 20 chr12 105895157 105895309 -38387180 - L1MA9 LINE L1 -15 6297 6141 3996 169 63 40 chr12 105895309 105896257 -38386232 - L1MB1 LINE L1 -643 5525 4520 191 315 19 0 chr12 105896444 105896498 -38385991 + L2 LINE L2 3161 3215 -57 243 229 31 21 chr12 105896979 105897075 -38385414 + MLT1L LTR MaLR 510 606 -9 490 279 143 0 chr12 105897082 105897243 -38385246 + MIR SINE MIR 79 262 0 333 246 71 40 chr12 105899612 105899738 -38382751 - MIR SINE MIR -22 240 111 245 179 0 18 chr12 105901141 105901197 -38381292 + CT-rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr12 105901561 105901590 -38380899 + AT_rich Low_complexity Low_complexity 1 29 0 1063 232 12 42 chr12 105902986 105903227 -38379262 + MIR SINE MIR 8 241 -21 518 241 129 6 chr12 105903318 105903488 -38379001 - MIR SINE MIR -7 255 65 1437 165 50 15 chr12 105903581 105903868 -38378621 - AluJb SINE Alu 0 316 21 532 121 12 0 chr12 105904037 105904120 -38378369 + MLT1E LTR MaLR 501 584 -9 453 81 81 41 chr12 105905950 105906122 -38376367 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1945 115 42 48 chr12 105906132 105906445 -38376044 - AluSp SINE Alu -2 311 1 2168 103 3 3 chr12 105906597 105906889 -38375600 - AluSg SINE Alu -18 292 1 735 143 0 8 chr12 105906954 105907073 -38375416 + FLAM_C SINE Alu 1 118 -15 217 324 42 0 chr12 105907118 105907189 -38375300 - MIR3 SINE MIR -21 187 114 2306 107 0 3 chr12 105907190 105907498 -38374991 + AluSx SINE Alu 1 307 -5 257 244 167 11 chr12 105907868 105907958 -38374531 + MIR SINE MIR 83 186 -76 2452 81 0 0 chr12 105908021 105908317 -38374172 + AluSc SINE Alu 1 296 -13 1572 184 18 3 chr12 105908469 105908751 -38373738 + AluJo SINE Alu 1 286 -26 25 65 0 0 chr12 105909103 105909149 -38373340 + AT_rich Low_complexity Low_complexity 1 46 0 2326 75 10 0 chr12 105909208 105909503 -38372986 - AluSx SINE Alu -14 298 1 1275 173 153 4 chr12 105909521 105909770 -38372719 - AluJo SINE Alu -26 286 1 800 155 31 0 chr12 105909797 105909926 -38372563 - FLAM_C SINE Alu 0 133 1 2253 78 4 4 chr12 105911026 105911329 -38371160 - AluY SINE Alu 0 303 1 2065 138 3 3 chr12 105913189 105913493 -38368996 - AluSx SINE Alu -8 304 1 2628 52 0 0 chr12 105913654 105913962 -38368527 - AluY SINE Alu -3 308 1 23 0 0 0 chr12 105915145 105915168 -38367321 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr12 105915312 105915342 -38367147 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr12 105915689 105915718 -38366771 + AT_rich Low_complexity Low_complexity 1 29 0 695 217 0 0 chr12 105916107 105916227 -38366262 - FLAM_C SINE Alu -13 120 1 2263 119 7 0 chr12 105916361 105916671 -38365818 - AluSx SINE Alu 0 312 1 2013 114 7 0 chr12 105916709 105917030 -38365459 - AluSg SINE Alu 0 323 1 520 223 82 43 chr12 105917216 105917255 -38365234 - L1ME4a LINE L1 -197 5924 5888 1675 181 10 14 chr12 105917255 105917548 -38364941 - AluJo SINE Alu -20 292 1 520 223 82 43 chr12 105917548 105917741 -38364748 - L1ME4a LINE L1 -233 5888 5683 1162 207 0 31 chr12 105917744 105917966 -38364523 - AluJo SINE Alu -13 299 85 216 0 0 0 chr12 105917969 105917993 -38364496 + (TA)n Simple_repeat Simple_repeat 2 25 0 309 257 133 18 chr12 105918079 105918192 -38364297 - L1ME4a LINE L1 -437 5684 5559 1471 190 104 48 chr12 105919102 105919544 -38362945 - L1MD3 LINE L1 -12 7983 7517 826 169 0 0 chr12 105919573 105919697 -38362792 - AluJb SINE Alu -186 126 3 467 181 0 0 chr12 105919702 105919796 -38362693 - L1MC4a LINE L1 -479 7329 7236 1471 142 50 76 chr12 105919826 105920129 -38362360 - AluJo SINE Alu -17 295 1 1990 135 3 41 chr12 105920479 105920797 -38361692 - AluJb SINE Alu -6 306 1 478 209 156 52 chr12 105921100 105921311 -38361178 - L2 LINE L2 0 3313 3081 * 1078 251 17 67 chr12 105921309 105921655 -38360834 - L2 LINE L2 -788 2526 2198 508 268 136 10 chr12 105921823 105922021 -38360468 - L1ME LINE L1 -316 5805 5583 403 251 133 29 chr12 105922054 105922565 -38359924 - L1ME4a LINE L1 -2 6119 5498 321 100 14 29 chr12 105922570 105922640 -38359849 + (TCCCC)n Simple_repeat Simple_repeat 4 72 0 1663 177 3 18 chr12 105922675 105922957 -38359532 - AluJb SINE Alu -34 278 1 23 68 0 0 chr12 105923158 105923202 -38359287 + AT_rich Low_complexity Low_complexity 1 44 0 29 78 0 0 chr12 105923418 105923482 -38359007 + AT_rich Low_complexity Low_complexity 1 64 0 457 265 114 0 chr12 105924704 105924836 -38357653 + MIR SINE MIR 7 153 -109 1938 151 0 3 chr12 105924868 105925180 -38357309 - AluSx SINE Alu 0 311 1 2370 90 0 0 chr12 105925236 105925525 -38356964 - AluSg SINE Alu -21 289 1 532 178 22 0 chr12 105925525 105925615 -38356874 - AluJ/FLAM SINE Alu -219 93 2 719 199 54 6 chr12 105926405 105926571 -38355918 - MER5B DNA MER1_type -1 177 4 232 219 16 0 chr12 105927542 105927606 -38354883 - MIR SINE MIR -14 248 184 2495 82 0 0 chr12 105927625 105927928 -38354561 - AluSc SINE Alu -6 303 1 749 144 0 0 chr12 105927928 105928039 -38354450 - AluSg/x SINE Alu -8 301 191 370 146 65 122 chr12 105928416 105928520 -38353969 + MIR SINE MIR 60 158 -104 1598 170 51 4 chr12 105928520 105928796 -38353693 - AluJb SINE Alu -23 289 1 370 146 65 122 chr12 105928796 105928814 -38353675 + MIR SINE MIR 158 175 -87 945 178 19 6 chr12 105928816 105928973 -38353516 - FRAM SINE Alu -22 154 1 604 228 76 23 chr12 105929008 105929179 -38353310 - AluJo SINE Alu -7 305 126 1120 152 0 0 chr12 105929263 105929428 -38353061 - AluSg/x SINE Alu -13 297 133 1308 171 0 5 chr12 105930653 105930863 -38351626 + AluJb SINE Alu 85 293 -19 228 206 22 132 chr12 105930984 105931120 -38351369 - L1ME4a LINE L1 -76 6045 1188 197 32 0 32 chr12 105931123 105931154 -38351335 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1657 120 4 4 chr12 105931156 105931389 -38351100 - AluSx SINE Alu -31 281 49 1908 145 19 22 chr12 105932054 105932365 -38350124 + AluSx SINE Alu 1 310 -2 201 74 0 0 chr12 105932398 105932425 -38350064 + (GAGAA)n Simple_repeat Simple_repeat 2 28 0 537 272 78 33 chr12 105932784 105933027 -38349462 + MIR SINE MIR 9 262 0 269 154 26 77 chr12 105933055 105933133 -38349356 - MIR SINE MIR -78 184 111 255 125 0 0 chr12 105933177 105933217 -38349272 + (CA)n Simple_repeat Simple_repeat 1 40 0 812 226 77 109 chr12 105933698 105934074 -38348415 - MLT1G LTR MaLR 0 590 227 2412 94 3 0 chr12 105934106 105934466 -38348023 + AluSq SINE Alu 1 313 0 199 114 29 0 chr12 105934472 105934507 -38347982 - MIR SINE MIR -108 154 119 288 236 24 126 chr12 105934812 105934885 -38347604 - MIR SINE MIR -113 149 93 1922 147 6 16 chr12 105934885 105935199 -38347290 + AluSx SINE Alu 2 312 0 288 236 24 126 chr12 105935199 105935252 -38347237 - MIR SINE MIR -169 93 36 186 325 133 8 chr12 105935364 105935484 -38347005 - L2 LINE L2 0 3272 3138 2065 138 3 54 chr12 105935682 105936036 -38346453 - MER1B DNA MER1_type 0 337 2 1372 107 123 0 chr12 105936299 105936551 -38345938 + L1MA4 LINE L1 6012 6294 -6 647 229 18 41 chr12 105937480 105937650 -38344839 + MIR SINE MIR 2 167 -95 1007 159 33 16 chr12 105937652 105937834 -38344655 - L1MC1 LINE L1 -63 6270 6086 22 35 0 0 chr12 105938328 105938357 -38344132 + AT_rich Low_complexity Low_complexity 1 29 0 2337 88 7 0 chr12 105939583 105939877 -38342612 - AluSc SINE Alu -13 296 1 1985 142 3 3 chr12 105939897 105940179 -38342310 - AluJo SINE Alu -30 282 1 225 349 0 0 chr12 105940646 105940712 -38341777 + CT-rich Low_complexity Low_complexity 1 66 0 795 160 8 0 chr12 105941413 105941538 -38340951 + FLAM_A SINE Alu 1 126 -7 21 36 0 0 chr12 105941719 105941747 -38340742 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr12 105941815 105941858 -38340631 + AT_rich Low_complexity Low_complexity 1 43 0 2091 244 169 9 chr12 105942124 105943191 -38339298 - L2 LINE L2 0 3313 2062 184 254 109 18 chr12 105943318 105943373 -38339116 - L2 LINE L2 -24 3289 3230 265 263 79 0 chr12 105943435 105943549 -38338940 + MIR SINE MIR 121 243 -19 202 289 215 16 chr12 105943911 105944032 -38338457 + L2 LINE L2 3168 3312 -1 207 243 135 14 chr12 105944055 105944129 -38338360 - L3 LINE CR1 -1047 530 448 195 302 0 0 chr12 105945061 105945104 -38337385 - MIR SINE MIR -124 84 42 361 286 136 15 chr12 105945403 105945602 -38336887 - MIR SINE MIR -6 256 34 215 253 172 0 chr12 105946128 105946215 -38336274 + MIR SINE MIR 106 207 -55 186 270 32 16 chr12 105946609 105946672 -38335817 + MIR SINE MIR 48 111 -151 259 167 0 0 chr12 105946698 105946746 -38335743 + MER5B DNA MER1_type 128 175 -3 899 254 55 94 chr12 105947082 105947613 -38334876 + MLT1J LTR MaLR 1 510 -1 705 292 189 0 chr12 105947799 105948080 -38334409 + MER102b DNA MER1_type 4 337 -4 21 0 0 0 chr12 105951477 105951498 -38330991 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr12 105951820 105951844 -38330645 + (T)n Simple_repeat Simple_repeat 1 24 0 253 262 178 37 chr12 105952432 105952646 -38329843 - L2 LINE L2 -2 3270 3027 * 743 264 168 42 chr12 105952643 105953183 -38329306 + L2 LINE L2 2708 3310 -3 239 321 37 18 chr12 105953192 105953301 -38329188 - L2 LINE L2 -235 3037 2927 6079 131 16 29 chr12 105953308 105954641 -38327848 + L1MA4 LINE L1 4938 6253 -47 446 272 171 59 chr12 105955460 105955549 -38326940 - L2 LINE L2 -6 3307 3229 2357 63 0 30 chr12 105955549 105955850 -38326639 - AluY SINE Alu -19 292 1 446 272 171 59 chr12 105955850 105956135 -38326354 - L2 LINE L2 -84 3229 2891 773 305 56 5 chr12 105956225 105956619 -38325870 - L2 LINE L2 -673 2641 2228 241 340 53 5 chr12 105956656 105956862 -38325627 - L2 LINE L2 -2438 876 661 3434 119 40 46 chr12 105958163 105958699 -38323790 + MER4A LTR ERV1 1 534 -66 2401 90 0 3 chr12 105958699 105959000 -38323489 - AluSg SINE Alu -10 300 1 3434 119 40 46 chr12 105959000 105959067 -38323422 + MER4A LTR ERV1 534 600 0 2226 119 7 0 chr12 105959866 105960168 -38322321 - AluSp SINE Alu -9 304 1 190 252 175 39 chr12 105960920 105961023 -38321466 + L3 LINE CR1 1460 1576 -1 225 206 0 110 chr12 105961891 105961964 -38320525 + L2 LINE L2 3208 3272 0 437 304 75 9 chr12 105962019 105962246 -38320243 - MIR SINE MIR -5 257 16 637 286 90 16 chr12 105962323 105962512 -38319977 + MLT1H1 LTR MaLR 42 244 -311 469 129 0 86 chr12 105962512 105962558 -38319931 + AluY SINE Alu 2 38 -280 2821 81 20 0 chr12 105962558 105962915 -38319574 + THE1B LTR MaLR 1 364 0 469 129 0 86 chr12 105962915 105962961 -38319528 + AluY SINE Alu 38 86 -232 990 113 14 0 chr12 105963086 105963227 -38319262 - AluJb SINE Alu -169 143 1 815 179 187 72 chr12 105964110 105964215 -38318274 + AluJb SINE Alu 2 94 -208 2275 96 0 10 chr12 105964215 105964516 -38317973 - AluY SINE Alu -13 298 1 815 179 187 72 chr12 105964516 105964672 -38317817 + AluJb SINE Alu 94 293 -9 1667 162 52 0 chr12 105965060 105965213 -38317276 - AluJo SINE Alu -27 285 111 288 0 0 0 chr12 105965213 105965245 -38317244 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1667 162 52 0 chr12 105965245 105965362 -38317127 - AluJo SINE Alu -201 111 1 2311 129 0 0 chr12 105967179 105967490 -38314999 + AluSx SINE Alu 1 311 -1 297 0 0 0 chr12 105967497 105967530 -38314959 + (TA)n Simple_repeat Simple_repeat 2 34 0 1774 141 48 0 chr12 105968218 105968512 -38313977 - AluSx SINE Alu 0 307 1 3802 106 4 53 chr12 105968628 105969328 -38313161 - SVA Other Other 0 1386 721 315 175 18 0 chr12 105969660 105969717 -38312772 - AluJ/FLAM SINE Alu -242 60 3 2306 78 0 0 chr12 105969897 105970215 -38312274 + AluSp SINE Alu 1 318 0 1267 209 25 11 chr12 105970487 105970769 -38311720 + AluSq SINE Alu 1 286 -27 3457 190 20 42 chr12 105971132 105971808 -38310681 - L1MA10 LINE L1 0 6334 5675 2250 117 0 0 chr12 105971808 105972107 -38310382 - AluSx SINE Alu -13 299 1 3457 190 20 42 chr12 105972107 105972184 -38310305 - L1MA10 LINE L1 -659 5675 5598 1230 132 0 6 chr12 105972771 105972945 -38309544 - AluSg/x SINE Alu -13 297 125 2474 78 0 3 chr12 105972954 105973261 -38309228 - AluSg SINE Alu -4 306 1 181 213 43 21 chr12 105973592 105973639 -38308850 + MIR SINE MIR 100 147 -115 557 309 104 40 chr12 105974266 105974593 -38307896 - L2 LINE L2 -1 3312 2965 264 242 254 19 chr12 105975392 105975567 -38306922 + MIR SINE MIR 20 223 -39 359 281 12 0 chr12 105975863 105975945 -38306544 - L2 LINE L2 0 3313 3231 2283 100 0 0 chr12 105976092 105976383 -38306106 - AluSc SINE Alu -4 305 15 237 286 0 57 chr12 105976449 105976519 -38305970 - MIR SINE MIR -13 249 184 357 350 109 24 chr12 105976676 105977007 -38305482 + L2 LINE L2 2914 3272 0 2509 77 0 0 chr12 105977373 105977684 -38304805 + AluY SINE Alu 1 311 0 2357 92 0 22 chr12 105979106 105979421 -38303068 + AluY SINE Alu 1 308 -3 300 148 0 0 chr12 105981403 105981464 -38301025 + (TATG)n Simple_repeat Simple_repeat 2 62 0 2743 241 22 18 chr12 105983938 105984656 -38297833 + L1ME1 LINE L1 5441 6161 -5 2337 175 40 37 chr12 105985187 105985643 -38296846 + MSTB2 LTR MaLR 1 457 0 699 249 54 29 chr12 105986153 105986394 -38296095 + MIR SINE MIR 2 248 -14 1956 251 48 29 chr12 105986549 105987139 -38295350 + L3 LINE CR1 332 932 -645 340 276 164 26 chr12 105987225 105987377 -38295112 - MIR SINE MIR -70 192 20 213 308 19 28 chr12 105987400 105987507 -38294982 + MIR SINE MIR 157 262 0 24 32 0 0 chr12 105987775 105987806 -38294683 + AT_rich Low_complexity Low_complexity 1 31 0 255 182 0 0 chr12 105988037 105988092 -38294397 - MER4-int LTR ERV1 -5433 1165 1111 308 338 40 76 chr12 105988942 105989167 -38293322 + L3 LINE CR1 571 787 -790 818 315 96 29 chr12 105989311 105989730 -38292759 + L3 LINE CR1 1128 1574 -3 388 315 15 0 chr12 105990187 105990317 -38292172 + MIR SINE MIR 8 139 -123 330 328 55 0 chr12 105991039 105991167 -38291322 - MIR SINE MIR -71 191 57 230 322 128 20 chr12 105991324 105991473 -38291016 + MLT1K LTR MaLR 11 175 -413 213 119 0 0 chr12 105991474 105991516 -38290973 + (TC)n Simple_repeat Simple_repeat 1 42 0 2313 85 0 0 chr12 105991605 105991898 -38290591 - AluY SINE Alu -18 293 1 1298 140 0 15 chr12 105992427 105992627 -38289862 - AluSg/x SINE Alu -39 271 75 485 352 57 43 chr12 105993142 105993602 -38288887 + L2 LINE L2 2848 3313 0 383 312 102 16 chr12 105993789 105993975 -38288514 - MIR SINE MIR -40 222 21 2261 134 6 14 chr12 105994235 105994579 -38287910 - L1PA16 LINE L1 0 6166 5826 294 357 39 23 chr12 106044596 106044725 -38237764 + L2 LINE L2 3137 3267 -5 532 298 8 0 chr12 106044964 106045095 -38237394 + MIR3 SINE MIR 77 208 0 494 69 0 14 chr12 106045986 106046013 -38236476 + (CA)n Simple_repeat Simple_repeat 1 97 0 494 69 0 14 chr12 106046013 106046085 -38236404 + (CA)n Simple_repeat Simple_repeat 2 72 0 490 263 121 20 chr12 106046744 106046909 -38235580 - MER5A DNA MER1_type -1 188 1 302 226 51 51 chr12 106046914 106047051 -38235438 + MLT1J LTR MaLR 325 461 -50 188 338 149 14 chr12 106047296 106047444 -38235045 - L2 LINE L2 -820 2494 2327 556 319 16 5 chr12 106047536 106047727 -38234762 + MIR SINE MIR 70 262 0 506 16 0 16 chr12 106050960 106051024 -38231465 + (TCCA)n Simple_repeat Simple_repeat 1 63 0 1229 274 92 33 chr12 106051211 106051538 -38230951 - L2 LINE L2 -2 3311 3005 1925 157 3 19 chr12 106051538 106051850 -38230639 + AluSx SINE Alu 1 307 -5 1229 274 92 33 chr12 106051850 106052293 -38230196 - L2 LINE L2 -308 3005 2503 390 115 0 0 chr12 106053363 106053424 -38229065 + (TG)n Simple_repeat Simple_repeat 2 62 0 1203 180 180 3 chr12 106053727 106054022 -38228467 - MER7A DNA MER2_type -1 345 1 285 75 0 0 chr12 106054208 106054248 -38228241 + (GA)n Simple_repeat Simple_repeat 2 41 0 327 321 89 57 chr12 106054307 106054587 -38227902 + L2 LINE L2 2938 3226 -46 910 226 99 37 chr12 106055379 106055622 -38226867 + MIR SINE MIR 3 260 -2 1561 164 57 7 chr12 106056189 106056469 -38226020 - AluJo SINE Alu -18 294 1 215 290 68 62 chr12 106056594 106056770 -38225719 + L2 LINE L2 3114 3290 -23 2184 110 3 0 chr12 106057149 106057449 -38225040 - AluSg SINE Alu -9 301 1 586 259 97 5 chr12 106057814 106057999 -38224490 - MIR SINE MIR -4 258 57 180 353 118 0 chr12 106058149 106058217 -38224272 + MIR SINE MIR 1 76 -186 * 736 273 52 32 chr12 106058210 106058459 -38224030 + L2 LINE L2 3060 3313 0 651 312 98 4 chr12 106058583 106058817 -38223672 - MIR SINE MIR -5 257 2 488 280 12 48 chr12 106059387 106059555 -38222934 + MIR3 SINE MIR 44 205 -3 918 241 130 19 chr12 106060607 106061001 -38221488 + MLT1J2 LTR MaLR 3 442 -8 365 198 47 29 chr12 106061245 106061470 -38221019 + (TTATA)n Simple_repeat Simple_repeat 1 228 0 489 315 15 0 chr12 106061502 106061632 -38220857 + L2 LINE L2 3182 3313 0 979 245 23 0 chr12 106062290 106062506 -38219983 + MER58A DNA MER1_type 4 224 0 221 163 0 0 chr12 106062538 106062581 -38219908 + A-rich Low_complexity Low_complexity 1 43 0 1435 246 111 19 chr12 106064265 106064778 -38217711 + MLT1E LTR MaLR 26 585 -8 399 244 64 35 chr12 106065570 106065742 -38216747 + LTR31 LTR ERV1 443 619 0 192 125 0 0 chr12 106067371 106067403 -38215086 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 1047 266 42 33 chr12 106067572 106067933 -38214556 - L2 LINE L2 0 3313 2950 541 308 61 5 chr12 106067927 106068125 -38214364 - L2 LINE L2 -506 2808 2600 * 301 169 0 108 chr12 106068360 106068425 -38214064 - L2 LINE L2 -19 3294 3237 504 172 0 0 chr12 106069125 106069218 -38213271 - L1MB3 LINE L1 -10 6173 6081 679 79 0 0 chr12 106069320 106069409 -38213080 - 5S rRNA rRNA -31 90 2 1887 151 0 33 chr12 106069943 106070242 -38212247 + AluSx SINE Alu 14 302 -10 426 0 0 0 chr12 106070808 106070859 -38211630 + L1PA3 LINE L1 6102 6152 -3 22 0 0 0 chr12 106070859 106070881 -38211608 + AT_rich Low_complexity Low_complexity 1 22 0 3264 75 9 0 chr12 106071088 106071530 -38210959 + L1PA13 LINE L1 5714 6159 -4 334 391 17 11 chr12 106071879 106072058 -38210431 - L2 LINE L2 -455 2859 2680 312 283 33 11 chr12 106072061 106072153 -38210336 + MIR3 SINE MIR 114 207 -1 2055 93 75 0 chr12 106074342 106074620 -38207869 - AluSq SINE Alu -6 307 9 270 246 58 29 chr12 106074787 106074925 -38207564 + L2 LINE L2 1794 1935 -1379 477 245 0 0 chr12 106074936 106075038 -38207451 - MER3 DNA MER1_type -106 103 2 473 179 63 11 chr12 106077238 106077333 -38205156 - MIR SINE MIR -23 239 140 180 0 0 0 chr12 106077974 106077994 -38204495 + (A)n Simple_repeat Simple_repeat 1 20 0 332 350 22 15 chr12 106078354 106078491 -38203998 - MIR SINE MIR -70 192 55 207 204 41 0 chr12 106079335 106079384 -38203105 + GA-rich Low_complexity Low_complexity 3 53 0 266 122 20 0 chr12 106079445 106079494 -38202995 - MER53 DNA DNA -134 55 6 580 247 12 54 chr12 106079594 106079760 -38202729 - L2 LINE L2 0 3313 3155 356 271 68 68 chr12 106079779 106079971 -38202518 - MIR SINE MIR -13 249 58 568 288 67 38 chr12 106080019 106080429 -38202060 - L2 LINE L2 -241 3072 2639 227 215 62 15 chr12 106080657 106080722 -38201767 + L1ME LINE L1 5575 5642 -479 192 363 100 12 chr12 106082494 106082574 -38199915 + L2 LINE L2 3134 3220 -52 22 70 0 0 chr12 106083013 106083056 -38199433 + AT_rich Low_complexity Low_complexity 1 43 0 366 367 9 0 chr12 106083219 106083328 -38199161 + MIR3 SINE MIR 58 167 -41 625 200 177 29 chr12 106083544 106083719 -38198770 - MIR SINE MIR 0 262 62 252 296 163 0 chr12 106083930 106084028 -38198461 + MIR SINE MIR 47 160 -102 236 228 35 0 chr12 106084201 106084315 -38198174 + (TA)n Simple_repeat Simple_repeat 2 119 0 44 80 0 0 chr12 106084323 106084423 -38198066 + AT_rich Low_complexity Low_complexity 1 100 0 299 331 31 41 chr12 106084663 106084983 -38197506 - L1ME3A LINE L1 -260 5910 5594 1334 256 46 40 chr12 106085056 106085536 -38196953 + MER74B LTR ERVL 66 548 -74 292 184 26 40 chr12 106085472 106085548 -38196941 - MER88 LTR ERVL -311 153 79 * 1580 276 43 63 chr12 106085831 106086502 -38195987 - MLT2F LTR ERVL 0 663 6 642 313 60 32 chr12 106086664 106087130 -38195359 - L1MEd LINE L1 -5639 480 2 306 243 162 9 chr12 106087843 106087954 -38194535 - MIR3 SINE MIR -10 198 71 272 244 26 26 chr12 106088161 106088239 -38194250 + MIR SINE MIR 86 163 -99 212 308 13 0 chr12 106088559 106088637 -38193852 + MIR SINE MIR 184 262 0 24 32 0 0 chr12 106089531 106089562 -38192927 + AT_rich Low_complexity Low_complexity 1 31 0 239 321 118 1 chr12 106090209 106090334 -38192155 + MIR SINE MIR 31 166 -63 326 253 110 131 chr12 106090986 106091231 -38191258 + L2 LINE L2 3029 3268 -4 372 252 50 117 chr12 106091885 106092309 -38190180 + MLT1L LTR MaLR 101 611 -4 1198 244 84 27 chr12 106092678 106093120 -38189369 - MLT1C LTR MaLR 0 467 1 514 287 102 0 chr12 106093504 106093661 -38188828 + MER5B DNA MER1_type 1 173 -5 1351 90 0 0 chr12 106093932 106094099 -38188390 + AluSg/x SINE Alu 129 295 -17 1987 142 10 3 chr12 106094742 106095037 -38187452 - AluJb SINE Alu -14 298 2 418 257 222 63 chr12 106095184 106095447 -38187042 - L2 LINE L2 0 3313 3093 4659 101 3 6 chr12 106095447 106096102 -38186387 + MER39B LTR ERV1 1 653 0 418 257 222 63 chr12 106096102 106096266 -38186223 - L2 LINE L2 -220 3093 2818 1784 255 152 6 chr12 106096834 106097465 -38185024 + HsTC2c DNA Tc2 4 726 -3 1957 97 54 4 chr12 106097657 106097936 -38184553 + AluSg1 SINE Alu 1 293 -16 1703 257 108 18 chr12 106098598 106099518 -38182971 + L2 LINE L2 2282 3298 -15 225 311 136 8 chr12 106099808 106099940 -38182549 - L2 LINE L2 -4 3309 3161 206 326 133 10 chr12 106099952 106100050 -38182439 - MIR3 SINE MIR -95 113 4 252 86 0 0 chr12 106100090 106100125 -38182364 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 869 30 0 0 chr12 106100125 106100226 -38182263 - L1PA3 LINE L1 -13 6142 6042 202 114 0 29 chr12 106100651 106100686 -38181803 + (TC)n Simple_repeat Simple_repeat 2 35 0 255 61 0 0 chr12 106100687 106100720 -38181769 + (TG)n Simple_repeat Simple_repeat 2 34 0 241 276 0 0 chr12 106101047 106101105 -38181384 + MIR SINE MIR 125 182 -80 454 228 59 0 chr12 106101184 106101285 -38181204 - L2 LINE L2 -6 3307 3201 219 200 40 0 chr12 106101306 106101356 -38181133 - MIR SINE MIR -183 79 28 1688 175 11 7 chr12 106102141 106102465 -38180024 + AluJb SINE Alu 1 325 0 925 310 106 24 chr12 106102508 106103001 -38179488 + MLT1H LTR MaLR 1 533 -16 528 267 95 45 chr12 106103090 106103311 -38179178 - MIR SINE MIR -17 245 14 417 264 38 63 chr12 106105218 106105377 -38177112 - MIR SINE MIR -74 188 34 24 0 0 0 chr12 106105687 106105711 -38176778 + AT_rich Low_complexity Low_complexity 1 24 0 189 273 0 0 chr12 106105839 106105883 -38176606 + L2 LINE L2 2712 2755 -559 409 298 0 18 chr12 106105898 106106012 -38176477 - MER5B DNA MER1_type 0 178 67 2970 258 60 36 chr12 106106044 106106940 -38175549 + L1MEc LINE L1 37 910 -5486 2406 84 0 28 chr12 106106940 106107260 -38175229 + AluY SINE Alu 1 311 0 2970 258 60 36 chr12 106107260 106107540 -38174949 + L1MEc LINE L1 910 1182 -5214 2220 131 0 0 chr12 106107540 106107837 -38174652 + AluSx SINE Alu 1 297 -15 2970 258 60 36 chr12 106107837 106108313 -38174176 + L1MEc LINE L1 1182 1784 -4612 765 225 94 0 chr12 106108315 106108475 -38174014 + MER45A DNA AcHobo 4 178 0 234 62 0 0 chr12 106109722 106109754 -38172735 + (CA)n Simple_repeat Simple_repeat 2 33 0 2373 79 3 22 chr12 106111102 106111419 -38171070 - AluY SINE Alu 0 311 1 2868 9 0 3 chr12 106112868 106113185 -38169304 + AluYb8 SINE Alu 1 316 -2 2092 123 0 26 chr12 106114961 106115269 -38167220 - AluSx SINE Alu -12 300 1 22 0 0 0 chr12 106116303 106116325 -38166164 + AT_rich Low_complexity Low_complexity 1 22 0 347 243 150 36 chr12 106116535 106116675 -38165814 - L2 LINE L2 -3 3310 3155 261 348 142 21 chr12 106116807 106117040 -38165449 + L2 LINE L2 2544 2804 -510 487 310 61 31 chr12 106117220 106117481 -38165008 + L2 LINE L2 2231 2499 -815 536 286 69 0 chr12 106117567 106117742 -38164747 + MIR SINE MIR 59 245 -17 1951 142 0 41 chr12 106118654 106118971 -38163518 - AluSx SINE Alu -8 304 1 2881 6 0 0 chr12 106119148 106119459 -38163030 - AluY SINE Alu 0 311 1 203 327 73 18 chr12 106121026 106121191 -38161298 + MIR SINE MIR 85 258 -4 1562 137 66 119 chr12 106121647 106122057 -38160432 + MLT1B LTR MaLR 1 388 -2 236 357 125 46 chr12 106122154 106122482 -38160007 - L2 LINE L2 -115 3157 2804 181 391 0 0 chr12 106122748 106122812 -38159677 + L2 LINE L2 3208 3271 -1 634 272 28 125 chr12 106123187 106123547 -38158942 - L2 LINE L2 -5 3267 2943 206 237 13 53 chr12 106123764 106123840 -38158649 + CT-rich Low_complexity Low_complexity 3 75 0 1326 160 38 0 chr12 106123941 106124154 -38158335 + MER58A DNA MER1_type 4 224 0 339 298 120 66 chr12 106124181 106124629 -38157860 - L2 LINE L2 -122 3150 2683 251 233 17 33 chr12 106124633 106124693 -38157796 - MIR SINE MIR -4 258 200 192 264 69 56 chr12 106125661 106125733 -38156756 - MIR3 SINE MIR -25 183 111 342 356 43 9 chr12 106127049 106127164 -38155325 + L2 LINE L2 3154 3272 0 211 398 9 0 chr12 106127264 106127377 -38155112 - L2 LINE L2 -20 3252 3139 2161 142 0 0 chr12 106128304 106128614 -38153875 + AluSx SINE Alu 1 310 -2 202 152 65 22 chr12 106132237 106132283 -38150206 + CT-rich Low_complexity Low_complexity 3 50 0 689 256 166 23 chr12 106132761 106133062 -38149427 - L3 LINE CR1 -3 1574 1231 303 203 0 17 chr12 106133059 106133118 -38149371 + L2 LINE L2 3255 3312 -1 * 287 368 93 41 chr12 106133131 106133645 -38148844 + L2 LINE L2 2367 2907 -407 21 0 0 0 chr12 106134012 106134033 -38148456 + AT_rich Low_complexity Low_complexity 1 21 0 1293 137 14 0 chr12 106134665 106134877 -38147612 + L1PB4 LINE L1 5942 6156 0 206 146 49 0 chr12 106135451 106135492 -38146997 - MIR SINE MIR -109 153 111 4198 220 87 79 chr12 106135548 106136276 -38146213 + L1ME1 LINE L1 2 723 -6136 5607 137 14 13 chr12 106136276 106137401 -38145088 - L1PA16 LINE L1 0 6166 5034 2269 85 0 33 chr12 106137401 106137706 -38144783 - AluY SINE Alu -16 295 1 5607 137 14 13 chr12 106137706 106138247 -38144242 - L1PA16 LINE L1 -1132 5034 4495 4198 220 87 79 chr12 106138247 106138320 -38144169 + L1ME1 LINE L1 723 794 -6065 1461 163 89 11 chr12 106138320 106138602 -38143887 + AluJo SINE Alu 8 311 -1 4198 220 87 79 chr12 106138602 106138999 -38143490 + L1ME1 LINE L1 794 1210 -5649 1852 187 20 27 chr12 106138995 106139396 -38143093 + L1MB8 LINE L1 5760 6157 -21 * 22 70 0 0 chr12 106139430 106139473 -38143016 + AT_rich Low_complexity Low_complexity 1 43 0 2218 93 14 0 chr12 106139838 106140128 -38142361 + AluSg SINE Alu 1 294 -16 1999 222 101 25 chr12 106140322 106140526 -38141963 - L1MD2 LINE L1 0 6359 6172 333 0 0 0 chr12 106140526 106140563 -38141926 + (TG)n Simple_repeat Simple_repeat 2 38 0 1999 222 101 25 chr12 106140563 106140921 -38141568 - L1MD2 LINE L1 -187 6172 5754 1445 157 70 0 chr12 106140924 106141223 -38141266 - L1MD2 LINE L1 -669 5573 5254 7367 231 43 29 chr12 106142070 106142181 -38140308 + L1ME1 LINE L1 3729 3837 -3140 238 167 0 0 chr12 106142181 106142217 -38140272 - tRNA-Asp-GAC tRNA tRNA -39 36 1 7367 231 43 29 chr12 106142217 106145274 -38137215 + L1ME1 LINE L1 3837 6971 -6 2322 101 0 16 chr12 106145292 106145609 -38136880 + AluSq SINE Alu 1 312 -1 520 339 23 6 chr12 106145616 106145787 -38136702 - L2 LINE L2 -208 3105 2932 270 304 96 40 chr12 106146112 106146237 -38136252 - L2 LINE L2 0 3313 3182 196 220 203 0 chr12 106146639 106146698 -38135791 - MIR SINE MIR -5 257 187 481 267 101 45 chr12 106146704 106146951 -38135538 - MIR SINE MIR 0 262 2 301 222 0 0 chr12 106147341 106147404 -38135085 + MIR SINE MIR 6 68 -194 466 269 124 74 chr12 106148896 106149333 -38133156 - L2 LINE L2 -21 3251 2791 289 226 48 24 chr12 106149833 106149917 -38132572 + MIR SINE MIR 170 255 -7 23 54 0 0 chr12 106150650 106150687 -38131802 + AT_rich Low_complexity Low_complexity 1 37 0 257 350 65 16 chr12 106150831 106150954 -38131535 + MLT1K LTR MaLR 40 168 -420 1557 266 98 44 chr12 106150968 106151517 -38130972 + MLT1E LTR MaLR 15 593 0 431 297 40 49 chr12 106151536 106151815 -38130674 + MLT1K LTR MaLR 188 496 -92 27 29 0 0 chr12 106151826 106151860 -38130629 + AT_rich Low_complexity Low_complexity 1 34 0 15209 131 31 30 chr12 106152338 106152912 -38129577 - Tigger4(Zombi) DNA MER2_type 0 2731 2159 2022 136 0 7 chr12 106152912 106153206 -38129283 - AluSx SINE Alu -20 292 1 15209 131 31 30 chr12 106153206 106153625 -38128864 - Tigger4(Zombi) DNA MER2_type -572 2159 1742 2148 163 74 20 chr12 106153625 106154029 -38128460 + MSTB LTR MaLR 1 426 0 15209 131 31 30 chr12 106154029 106155613 -38126876 - Tigger4(Zombi) DNA MER2_type -989 1742 150 2554 62 0 3 chr12 106156203 106156511 -38125978 + AluY SINE Alu 1 307 -4 436 233 128 47 chr12 106156718 106156890 -38125599 + MIR SINE MIR 77 262 0 268 305 68 34 chr12 106157350 106157468 -38125021 + L2 LINE L2 3148 3269 -3 189 0 0 0 chr12 106157684 106157705 -38124784 + (T)n Simple_repeat Simple_repeat 1 21 0 643 207 51 55 chr12 106157796 106157978 -38124511 + MER39 LTR ERV1 5 149 -504 1367 193 30 4 chr12 106158028 106158293 -38124196 + MER39 LTR ERV1 411 682 -25 6664 110 15 23 chr12 106158711 106159050 -38123439 - L1MA3 LINE L1 0 6305 5965 1802 134 100 29 chr12 106159050 106159400 -38123089 - THE1C LTR MaLR 0 375 1 6664 110 15 23 chr12 106159400 106160173 -38122316 - L1MA3 LINE L1 -340 5965 5202 2351 69 0 0 chr12 106160425 106160714 -38121775 + AluY SINE Alu 6 294 -17 542 260 18 41 chr12 106160746 106160965 -38121524 - L1MEd LINE L1 -5008 1111 898 26 30 0 0 chr12 106161018 106161051 -38121438 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr12 106161516 106161537 -38120952 + AT_rich Low_complexity Low_complexity 1 21 0 252 231 269 10 chr12 106162389 106162493 -38119996 - MIR SINE MIR -7 255 125 2014 257 216 41 chr12 106164579 106165833 -38116656 + L2 LINE L2 1829 3307 -6 262 232 162 0 chr12 106165946 106166088 -38116401 - L1ME4a LINE L1 -1 6120 5956 342 237 101 111 chr12 106166435 106166633 -38115856 - MIR SINE MIR -2 260 65 322 282 120 46 chr12 106166943 106167036 -38115453 - HAL1b LINE L1 -673 675 590 1673 119 128 41 chr12 106167036 106167381 -38115108 + THE1C LTR MaLR 1 375 0 322 282 120 46 chr12 106167381 106167503 -38114986 - HAL1b LINE L1 -758 590 444 373 341 97 47 chr12 106167530 106167829 -38114660 - HAL1 LINE L1 -1050 1457 1144 201 219 164 41 chr12 106168291 106168364 -38114125 - MER91C DNA MER1_type -21 119 38 997 185 14 28 chr12 106168412 106168623 -38113866 + MER3 DNA MER1_type 2 209 0 688 218 95 0 chr12 106168631 106168778 -38113711 + MER5A DNA MER1_type 1 161 -28 412 172 172 0 chr12 106168781 106168868 -38113621 + MER5A DNA MER1_type 60 161 -28 509 189 144 9 chr12 106168875 106168986 -38113503 + MER5A DNA MER1_type 64 189 0 392 278 26 9 chr12 106169616 106169731 -38112758 - MIR SINE MIR -46 216 100 483 306 134 9 chr12 106169788 106170020 -38112469 - MIR SINE MIR 0 262 2 272 262 33 0 chr12 106170271 106170332 -38112157 - L2 LINE L2 -1 3271 3209 249 33 0 0 chr12 106171018 106171048 -38111441 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 230 370 171 36 chr12 106171062 106171424 -38111065 - L2 LINE L2 -37 3235 2825 227 263 152 30 chr12 106171437 106171536 -38110953 - MIR SINE MIR -149 113 3 2377 62 0 3 chr12 106173024 106173315 -38109174 - AluY SINE Alu -21 290 1 515 269 61 103 chr12 106173697 106174009 -38108480 + L2 LINE L2 2960 3258 -55 373 403 17 0 chr12 106174051 106174227 -38108262 + L2 LINE L2 2579 2757 -557 33 25 0 0 chr12 106174295 106174335 -38108154 + AT_rich Low_complexity Low_complexity 1 40 0 312 325 41 118 chr12 106174527 106175017 -38107472 + L2 LINE L2 2816 3267 -5 279 0 0 0 chr12 106175118 106175149 -38107340 + (TA)n Simple_repeat Simple_repeat 1 31 0 187 214 191 0 chr12 106175571 106175613 -38106876 - L2 LINE L2 -4 3268 3219 903 174 0 0 chr12 106175820 106175964 -38106525 + L1M4c LINE L1 19 162 -6222 554 135 0 0 chr12 106175990 106176086 -38106403 + L1MA4 LINE L1 6200 6295 -5 260 252 34 92 chr12 106176434 106176553 -38105936 - MLT1-int LTR MaLR -232 1139 1028 1079 126 140 29 chr12 106176922 106177015 -38105474 - MER30 DNA MER1_type 0 230 149 2307 81 0 43 chr12 106177015 106177338 -38105151 - AluSg1 SINE Alu 0 309 1 1079 126 140 29 chr12 106177338 106177451 -38105038 - MER30 DNA MER1_type -81 149 1 492 305 81 8 chr12 106177755 106178001 -38104488 - MLT1-int LTR MaLR -819 552 289 917 249 107 82 chr12 106178255 106178511 -38103978 - MLT1G1 LTR MaLR -172 423 152 3647 138 34 5 chr12 106178511 106179156 -38103333 - L1MA3 LINE L1 -5 6300 5637 917 249 107 82 chr12 106179156 106179312 -38103177 - MLT1G1 LTR MaLR -443 152 1 1651 153 2 143 chr12 106179700 106180139 -38102350 + MLT1B LTR MaLR 6 382 -8 824 240 41 19 chr12 106181564 106181928 -38100561 + MLT1J1 LTR MaLR 63 444 -2 330 292 92 23 chr12 106181972 106182102 -38100387 + L2 LINE L2 2935 3073 -199 24 32 0 0 chr12 106182183 106182214 -38100275 + AT_rich Low_complexity Low_complexity 1 31 0 296 412 23 0 chr12 106182418 106182549 -38099940 + L2 LINE L2 3133 3266 -6 275 159 0 0 chr12 106182571 106182615 -38099874 - AluJ/FLAM SINE Alu -209 93 50 1369 177 26 19 chr12 106182757 106183022 -38099467 - L1MB7 LINE L1 -18 6166 5900 1893 146 34 3 chr12 106183185 106183480 -38099009 + AluJb SINE Alu 1 304 -8 327 104 0 0 chr12 106183610 106183658 -38098831 + (TG)n Simple_repeat Simple_repeat 1 48 0 201 74 0 0 chr12 106183658 106183685 -38098804 + (GA)n Simple_repeat Simple_repeat 2 28 0 413 291 27 20 chr12 106183755 106183903 -38098586 + MLT1J2 LTR MaLR 3 151 -299 1019 197 78 100 chr12 106183933 106184294 -38098195 + MLT2D LTR ERVL 5 357 -57 348 43 0 0 chr12 106184294 106184340 -38098149 + (TC)n Simple_repeat Simple_repeat 1 46 0 351 150 0 0 chr12 106184340 106184400 -38098089 + (CA)n Simple_repeat Simple_repeat 2 61 0 296 86 15 0 chr12 106184400 106184454 -38098035 + MLT2B1 LTR ERVL 358 520 0 638 280 96 12 chr12 106184457 106184707 -38097782 + MLT1J2 LTR MaLR 161 431 -19 275 273 26 0 chr12 106185300 106185377 -38097112 + MER116 DNA Mariner 2 80 0 2563 256 74 23 chr12 106185377 106186517 -38095972 - L2 LINE L2 -36 3277 2079 203 305 122 8 chr12 106186560 106186691 -38095798 + MIR SINE MIR 107 252 -10 203 240 0 0 chr12 106187373 106187423 -38095066 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 930 371 12 6 chr12 106188005 106188345 -38094144 + L2 LINE L2 2553 2894 -420 1912 224 22 30 chr12 106188406 106188941 -38093548 - L1ME1 LINE L1 -2 6164 5634 20840 171 39 10 chr12 106188957 106193450 -38089039 + L1M1 LINE L1 11 4625 -2940 193 333 0 0 chr12 106194186 106194246 -38088243 - L2 LINE L2 -2 3270 3211 271 297 16 0 chr12 106194569 106194633 -38087856 + MIR SINE MIR 31 95 -113 526 275 39 45 chr12 106194857 106195035 -38087454 + MIR SINE MIR 56 232 -30 31644 111 14 54 chr12 106195548 106201940 -38080549 + L1PA7 LINE L1 12 6143 -11 2446 88 0 0 chr12 106201947 106202252 -38080237 + AluSg SINE Alu 1 305 -5 23 54 0 0 chr12 106202977 106203014 -38079475 + AT_rich Low_complexity Low_complexity 1 37 0 1674 227 77 16 chr12 106203274 106203745 -38078744 + MER39 LTR ERV1 1 684 -23 2127 114 3 10 chr12 106203889 106204196 -38078293 - AluSc SINE Alu -4 305 1 498 292 133 7 chr12 106204227 106204648 -38077841 + L1MDa LINE L1 1555 2028 -4512 1603 126 0 0 chr12 106204880 106205103 -38077386 - AluSg/x SINE Alu 0 312 90 1350 284 83 33 chr12 106205391 106206537 -38075952 + L1MDa LINE L1 3238 4440 -2100 944 208 6 0 chr12 106206730 106206898 -38075591 - Charlie1 DNA MER1_type -2591 170 2 1272 215 75 38 chr12 106206900 106207300 -38075189 - L1MC4 LINE L1 -202 7840 7426 207 0 0 0 chr12 106207577 106207600 -38074889 + (A)n Simple_repeat Simple_repeat 1 23 0 23 54 0 0 chr12 106208325 106208362 -38074127 + AT_rich Low_complexity Low_complexity 1 37 0 1681 225 77 16 chr12 106208622 106209093 -38073396 + MER39 LTR ERV1 1 684 -23 2394 97 0 3 chr12 106209234 106209544 -38072945 - AluSc SINE Alu 0 309 1 33 0 0 0 chr12 106209853 106209886 -38072603 + AT_rich Low_complexity Low_complexity 1 33 0 769 236 89 47 chr12 106209973 106210422 -38072067 + L1MC5 LINE L1 7464 7931 -30 233 187 154 22 chr12 106211411 106211502 -38070987 + L1ME4a LINE L1 5784 5886 -235 282 248 120 0 chr12 106211518 106211643 -38070846 + L1ME4a LINE L1 5974 6113 -8 232 329 92 0 chr12 106211683 106211847 -38070642 + L2 LINE L2 1842 2020 -1294 190 209 47 23 chr12 106211848 106211891 -38070598 - MER5A DNA MER1_type -2 187 144 213 108 0 0 chr12 106212031 106212068 -38070421 + (T)n Simple_repeat Simple_repeat 1 37 0 1274 45 0 0 chr12 106212071 106212225 -38070264 - L1PA3 LINE L1 -3 6152 5999 241 289 13 94 chr12 106212303 106212462 -38070027 - MLT1K LTR MaLR -166 422 277 2073 234 26 26 chr12 106212866 106213361 -38069128 + MLT1D LTR MaLR 2 496 -9 294 329 69 76 chr12 106213480 106213769 -38068720 + L2 LINE L2 2985 3271 -1 218 323 138 15 chr12 106214552 106214682 -38067807 + L2 LINE L2 3126 3271 -1 2403 229 9 37 chr12 106215117 106215663 -38066826 + MLT1F LTR MaLR 10 540 -2 609 290 66 8 chr12 106217285 106217574 -38064915 - L2 LINE L2 -248 3065 2762 240 35 0 0 chr12 106218279 106218308 -38064181 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 209 344 0 16 chr12 106218309 106218370 -38064119 - L2 LINE L2 -10 3262 3203 618 253 170 55 chr12 106219044 106219482 -38063007 - MLT1H LTR MaLR 0 549 23 236 338 36 29 chr12 106219662 106219801 -38062688 + L2 LINE L2 2933 3072 -200 2419 79 0 3 chr12 106219807 106220111 -38062378 - AluY SINE Alu -8 303 1 181 356 11 0 chr12 106220327 106220417 -38062072 + L2 LINE L2 3223 3313 0 1293 172 25 47 chr12 106221365 106221824 -38060665 + LTR54 LTR ERV1 1 510 0 267 270 80 10 chr12 106221951 106222051 -38060438 + MER51-int LTR ERV1 2040 2146 -4185 * 709 242 13 0 chr12 106222042 106222191 -38060298 + MER51-int LTR ERV1 2092 2242 -4089 263 167 0 19 chr12 106222306 106222360 -38060129 + MER51-int LTR ERV1 438 490 -7047 467 255 41 100 chr12 106222366 106222716 -38059773 + MER51-int LTR ERV1 464 2558 -3773 716 249 11 0 chr12 106223058 106223235 -38059254 + MER51-int LTR ERV1 841 1019 -4104 516 244 0 30 chr12 106223446 106223581 -38058908 - MER34 LTR ERV1 -411 131 1 2273 221 98 68 chr12 106223590 106224879 -38057610 + MER51-int LTR ERV1 1694 2936 -2000 271 161 247 12 chr12 106224874 106224955 -38057534 + MER51-int LTR ERV1 4334 4433 -1898 * 3468 253 48 20 chr12 106224965 106226045 -38056444 + MER51-int LTR ERV1 2849 3958 -913 3273 90 43 0 chr12 106226045 106226511 -38055978 + LTR19A LTR ERV1 1 486 0 900 82 0 37 chr12 106226521 106226656 -38055833 + LTR19A LTR ERV1 357 486 0 646 211 26 19 chr12 106226656 106226812 -38055677 + MER51-int LTR ERV1 3954 4110 -761 1421 206 71 87 chr12 106226984 106227325 -38055164 + MER51-int LTR ERV1 6676 7188 -628 454 104 13 26 chr12 106227325 106227402 -38055087 - MADE1 DNA Mariner -4 76 1 1421 206 71 87 chr12 106227402 106227539 -38054950 + MER51-int LTR ERV1 7188 7326 -490 1467 145 19 6 chr12 106227539 106227983 -38054506 + LTR54 LTR ERV1 1 510 0 188 316 31 10 chr12 106228461 106228559 -38053930 + L2 LINE L2 2645 2744 -570 261 238 113 38 chr12 106228889 106228969 -38053520 + L2 LINE L2 3224 3309 -4 276 339 41 8 chr12 106229273 106229394 -38053095 - MIR SINE MIR -118 144 20 365 278 45 8 chr12 106230049 106230182 -38052307 + HsTC2 DNA Tc2 4 141 -1757 987 194 145 43 chr12 106230217 106230568 -38051921 + HsTC2 DNA Tc2 1430 1816 -82 2406 106 43 3 chr12 106230682 106231030 -38051459 + THE1B LTR MaLR 1 362 -2 2750 110 64 0 chr12 106231033 106231491 -38050998 + THE1B-int LTR MaLR 1 483 -1150 * 5721 120 2 4 chr12 106231488 106232304 -38050185 + THE1B-int LTR MaLR 766 1580 0 2265 96 45 20 chr12 106232304 106232682 -38049807 + THE1B LTR MaLR 1 375 0 1300 270 64 10 chr12 106233145 106233537 -38048952 + MLT1J LTR MaLR 69 481 -30 526 267 106 0 chr12 106234120 106234300 -38048189 - MIR SINE MIR -15 247 49 671 268 96 0 chr12 106234969 106235167 -38047322 + MIR SINE MIR 7 223 -39 1428 171 5 66 chr12 106235503 106235806 -38046683 + MER67D LTR ERV1 15 301 -234 2199 116 0 0 chr12 106236373 106236658 -38045831 - AluSg SINE Alu -25 285 1 2397 66 17 3 chr12 106236806 106237107 -38045382 - AluY SINE Alu -6 305 1 366 295 60 30 chr12 106237126 106237292 -38045197 + L1MC4a LINE L1 4882 5052 -1094 305 244 60 131 chr12 106237487 106237869 -38044620 + L1MC4a LINE L1 5610 5964 -1844 1772 168 0 7 chr12 106238026 106238335 -38044154 + AluJb SINE Alu 1 307 0 200 326 29 103 chr12 106238866 106238928 -38043561 + L2 LINE L2 2553 2618 -696 2903 133 110 19 chr12 106238928 106239411 -38043078 - MER1A DNA MER1_type 0 527 1 200 326 29 103 chr12 106239411 106239523 -38042966 + L2 LINE L2 2618 2714 -600 21 36 0 0 chr12 106239708 106239736 -38042753 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr12 106239781 106239808 -38042681 + AT_rich Low_complexity Low_complexity 1 27 0 2408 153 22 10 chr12 106240011 106240416 -38042073 + MSTA LTR MaLR 19 428 0 319 339 8 39 chr12 106240425 106240555 -38041934 - MIR SINE MIR -64 144 19 26 0 0 0 chr12 106240988 106241014 -38041475 + AT_rich Low_complexity Low_complexity 1 26 0 1986 164 47 21 chr12 106241113 106241645 -38040844 + MLT2A2 LTR ERVL 1 554 0 800 240 58 31 chr12 106242470 106242728 -38039761 - MER92A LTR ERV1 -9 403 139 2670 133 5 8 chr12 106242769 106243166 -38039323 + MSTA LTR MaLR 33 428 0 559 282 19 6 chr12 106243166 106243306 -38039183 - MER92A LTR ERV1 -269 143 2 31 0 0 0 chr12 106243600 106243631 -38038858 + AT_rich Low_complexity Low_complexity 1 31 0 330 291 135 27 chr12 106243786 106243934 -38038555 - MIR3 SINE MIR -8 200 37 187 120 20 40 chr12 106244096 106244146 -38038343 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr12 106244419 106244442 -38038047 + AT_rich Low_complexity Low_complexity 1 23 0 662 312 93 7 chr12 106244711 106245153 -38037336 - L1ME4a LINE L1 -14 6107 5628 21 0 0 0 chr12 106245153 106245174 -38037315 + AT_rich Low_complexity Low_complexity 1 21 0 432 280 83 26 chr12 106245730 106245923 -38036566 - MIR SINE MIR -12 250 47 308 342 45 60 chr12 106245931 106246130 -38036359 + L3 LINE CR1 1356 1551 -26 27 0 0 0 chr12 106246552 106246579 -38035910 + AT_rich Low_complexity Low_complexity 1 27 0 316 209 93 0 chr12 106247149 106247235 -38035254 + MIR SINE MIR 96 189 -73 738 249 41 16 chr12 106248604 106248849 -38033640 + MER46B DNA MER2_type 2 127 -109 1581 182 43 3 chr12 106249106 106249452 -38033037 + MER46B DNA MER2_type 2 236 0 217 300 243 14 chr12 106249469 106249609 -38032880 - MIR SINE MIR -73 189 18 377 238 152 19 chr12 106250849 106250954 -38031535 - MIR SINE MIR -107 155 37 239 328 16 0 chr12 106251559 106251623 -38030866 - L3 LINE CR1 -116 1461 1397 555 300 33 17 chr12 106252137 106252317 -38030172 - MER5A DNA MER1_type 0 189 7 509 163 0 0 chr12 106252388 106252474 -38030015 - L1P LINE L1 -1892 4254 4169 1956 139 54 25 chr12 106252477 106252830 -38029659 - THE1C LTR MaLR -12 363 1 770 155 39 0 chr12 106252831 106252960 -38029529 - L1P LINE L1 -1974 4172 4039 2505 81 17 0 chr12 106252960 106253301 -38029188 + L1PA13 LINE L1 5810 6161 -2 189 171 0 0 chr12 106253495 106253530 -38028959 + (TA)n Simple_repeat Simple_repeat 1 35 0 661 168 0 0 chr12 106253985 106254092 -38028397 - FLAM_A SINE Alu -23 119 13 36209 97 14 7 chr12 106254119 106260218 -38022271 + L1PA6 LINE L1 11 6152 -2 33 43 0 0 chr12 106260242 106260289 -38022200 + AT_rich Low_complexity Low_complexity 1 47 0 1848 168 7 0 chr12 106261043 106261341 -38021148 - AluSx SINE Alu -12 300 1 207 176 0 0 chr12 106263207 106263255 -38019234 + (TG)n Simple_repeat Simple_repeat 1 48 0 23 0 0 0 chr12 106263576 106263599 -38018890 + AT_rich Low_complexity Low_complexity 1 23 0 261 333 56 0 chr12 106264185 106264293 -38018196 - MIR SINE MIR -2 260 147 249 236 178 95 chr12 106265831 106266102 -38016387 + MLT1H LTR MaLR 1 248 -301 2510 163 52 54 chr12 106266102 106266661 -38015828 - MER74A LTR ERVL 0 558 1 249 236 178 95 chr12 106266661 106266872 -38015617 + MLT1H LTR MaLR 248 523 -26 309 235 37 88 chr12 106266950 106267032 -38015457 + MIR SINE MIR 124 198 -64 1905 171 61 6 chr12 106267032 106267378 -38015111 - MLT1A1 LTR MaLR 0 365 1 309 235 37 88 chr12 106267378 106267431 -38015058 + MIR SINE MIR 198 252 -10 958 296 130 16 chr12 106268052 106268484 -38014005 - L2 LINE L2 -4 3309 2829 1725 169 14 20 chr12 106269127 106269423 -38013066 + AluJo SINE Alu 1 294 -18 395 165 88 0 chr12 106269756 106269847 -38012642 + L1MC4 LINE L1 6983 7081 -961 2266 222 42 27 chr12 106269851 106270445 -38012044 + L1MC4 LINE L1 7238 7840 -202 944 208 6 0 chr12 106270447 106270615 -38011874 + Charlie1 DNA MER1_type 2 170 -2591 1443 287 93 30 chr12 106270808 106272119 -38010370 - L1MEd LINE L1 -2100 4029 2636 1603 126 0 0 chr12 106272240 106272463 -38010026 + AluSg/x SINE Alu 88 310 0 711 282 58 66 chr12 106272690 106273146 -38009343 - L1MEd LINE L1 -4647 1663 1160 2375 58 3 3 chr12 106273146 106273440 -38009049 + AluY SINE Alu 1 294 -17 711 282 58 66 chr12 106273440 106273701 -38008788 - L1MEd LINE L1 -5150 1160 898 26 30 0 0 chr12 106273744 106273777 -38008712 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr12 106274242 106274263 -38008226 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 106274794 106274822 -38007667 + AT_rich Low_complexity Low_complexity 1 28 0 252 231 269 10 chr12 106275116 106275220 -38007269 - MIR SINE MIR -7 255 125 2014 257 216 41 chr12 106277306 106278560 -38003929 + L2 LINE L2 1829 3307 -6 262 232 162 0 chr12 106278673 106278815 -38003674 - L1ME4a LINE L1 -1 6120 5956 342 237 101 111 chr12 106279162 106279360 -38003129 - MIR SINE MIR -2 260 65 322 282 120 46 chr12 106279670 106279763 -38002726 - HAL1b LINE L1 -673 675 590 1673 119 128 41 chr12 106279763 106280108 -38002381 + THE1C LTR MaLR 1 375 0 322 282 120 46 chr12 106280108 106280230 -38002259 - HAL1b LINE L1 -758 590 444 373 341 97 47 chr12 106280257 106280556 -38001933 - HAL1 LINE L1 -1050 1457 1144 396 245 170 7 chr12 106282192 106282339 -38000150 - L2 LINE L2 -12 3301 3131 11579 110 9 5 chr12 106282478 106282766 -37999723 - L1PA8A LINE L1 -655 5476 5191 2322 98 10 0 chr12 106282766 106283063 -37999426 - AluSc SINE Alu -9 300 1 11579 110 9 5 chr12 106283063 106284615 -37997874 - L1PA8A LINE L1 -940 5191 3633 16037 54 5 0 chr12 106284715 106286951 -37995538 + L1P2 LINE L1 3335 5579 -575 3260 80 7 4 chr12 106287051 106287511 -37994978 - L1PA8A LINE L1 -226 5905 5445 * 23388 88 9 11 chr12 106287502 106290765 -37991724 + L1P LINE L1 11 3267 -2879 7125 55 3 26 chr12 106290875 106291848 -37990641 - L1PA6 LINE L1 -2 6152 5203 1935 98 25 95 chr12 106291848 106292175 -37990314 - AluY SINE Alu -7 304 1 7125 55 3 26 chr12 106292175 106292652 -37989837 - L1PA6 LINE L1 -951 5203 4717 8607 164 38 18 chr12 106292652 106294404 -37988085 - L1 LINE L1 -1164 4982 3197 238 105 21 84 chr12 106294515 106294706 -37987783 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 229 200 0 0 chr12 106294729 106294774 -37987715 + Tigger3(Golem) DNA MER2_type 2919 2963 -66 7818 126 46 7 chr12 106294971 106295499 -37986990 - HSMAR2 DNA Mariner 0 1302 796 2166 137 16 29 chr12 106295499 106295879 -37986610 + THE1C LTR MaLR 1 375 0 7818 126 46 7 chr12 106295879 106296599 -37985890 - HSMAR2 DNA Mariner -506 796 5 510 177 13 0 chr12 106296604 106296683 -37985806 - Tigger3(Golem) DNA MER2_type -2949 80 1 286 314 50 7 chr12 106296754 106296894 -37985595 + L3 LINE CR1 1424 1569 -8 205 300 0 17 chr12 106297250 106297310 -37985179 - L3 LINE CR1 -3 1574 1516 806 249 88 0 chr12 106297320 106297525 -37984964 + MIR SINE MIR 40 262 0 238 383 78 7 chr12 106297751 106297892 -37984597 - MIR3 SINE MIR -52 156 6 2050 134 50 34 chr12 106298636 106298994 -37983495 - THE1B LTR MaLR 0 364 1 411 178 56 0 chr12 106299221 106299328 -37983161 - L1PA8 LINE L1 -4 6168 6056 287 247 22 0 chr12 106299496 106299585 -37982904 - L1M4 LINE L1 -1950 4196 4106 333 322 65 30 chr12 106299590 106299789 -37982700 - L1M4 LINE L1 -2125 4021 3816 248 260 26 0 chr12 106299931 106300008 -37982481 + (CATA)n Simple_repeat Simple_repeat 4 82 0 1152 249 8 27 chr12 106300628 106300650 -37981839 + MIR SINE MIR 7 28 -234 1614 223 25 83 chr12 106300650 106301201 -37981288 + MLT2B1 LTR ERVL 2 520 0 1152 249 8 27 chr12 106301201 106301439 -37981050 + MIR SINE MIR 28 262 0 3311 126 18 11 chr12 106303136 106303692 -37978797 + L1P LINE L1 2990 3549 -2597 6476 124 9 15 chr12 106303792 106304694 -37977795 + L1MA3 LINE L1 5223 6118 -187 1867 124 4 0 chr12 106304694 106304953 -37977536 - AluSp SINE Alu -17 296 37 6476 124 9 15 chr12 106304953 106305133 -37977356 + L1MA3 LINE L1 6118 6298 -7 2246 228 72 38 chr12 106305133 106305641 -37976848 - L1ME LINE L1 -538 5628 5139 1984 94 7 0 chr12 106305641 106305929 -37976560 - L1PA13 LINE L1 -3 6160 5871 2246 228 72 38 chr12 106305929 106306413 -37976076 - L1ME LINE L1 -1027 5139 4593 741 306 76 55 chr12 106306414 106306833 -37975656 + L2 LINE L2 2884 3311 -2 27 0 0 0 chr12 106307222 106307249 -37975240 + AT_rich Low_complexity Low_complexity 1 27 0 411 256 43 43 chr12 106307495 106307612 -37974877 - L2 LINE L2 -1 3271 3155 442 322 97 26 chr12 106308218 106308257 -37974232 - MIR SINE MIR -1 261 226 2313 130 25 0 chr12 106308257 106308612 -37973877 + THE1B LTR MaLR 1 364 0 442 322 97 26 chr12 106308612 106308799 -37973690 - MIR SINE MIR -36 226 19 1888 164 3 13 chr12 106309098 106309397 -37973092 - AluJo SINE Alu -16 296 1 3089 141 23 0 chr12 106310919 106311396 -37971093 - MLT2B2 LTR ERVL -27 488 1 195 167 119 0 chr12 106311652 106311694 -37970795 - L2 LINE L2 -5 3267 3221 188 291 17 106 chr12 106312182 106312298 -37970191 - L2 LINE L2 -135 3178 3082 4925 83 27 3 chr12 106312298 106312975 -37969514 - L1PB1 LINE L1 -6 6145 5453 188 291 17 106 chr12 106312975 106313037 -37969452 - L2 LINE L2 -231 3082 3016 2396 135 64 25 chr12 106313553 106313961 -37968528 - MSTB LTR MaLR -2 424 1 497 332 80 13 chr12 106314393 106314619 -37967870 - L3 LINE CR1 -2 1575 1335 838 299 116 26 chr12 106315202 106315660 -37966829 - L3 LINE CR1 -397 1180 682 344 308 28 49 chr12 106316459 106316602 -37965887 - MIR3 SINE MIR -48 160 21 247 301 19 10 chr12 106317105 106317208 -37965281 - L1M4 LINE L1 -1299 4847 4744 284 288 80 22 chr12 106317253 106317527 -37964962 - L1M4 LINE L1 -1470 4676 4387 199 122 44 44 chr12 106317540 106317630 -37964859 + (TA)n Simple_repeat Simple_repeat 1 90 0 488 254 32 24 chr12 106317768 106317894 -37964595 - MIR SINE MIR -74 188 62 360 0 0 0 chr12 106318299 106318339 -37964150 + (T)n Simple_repeat Simple_repeat 1 40 0 289 176 19 62 chr12 106318397 106318503 -37963986 + MIR SINE MIR 13 111 -97 1541 301 82 37 chr12 106318507 106319211 -37963278 + MER45C DNA AcHobo 35 770 -183 1680 165 29 3 chr12 106319328 106319637 -37962852 + MER45B DNA AcHobo 720 1036 -4 189 211 0 0 chr12 106319997 106320049 -37962440 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 255 289 114 18 chr12 106320054 106320168 -37962321 - L2 LINE L2 -6 3266 3142 2068 145 0 0 chr12 106320210 106320506 -37961983 - AluSx SINE Alu -14 298 3 576 329 162 36 chr12 106320783 106321242 -37961247 - L2 LINE L2 -475 2839 2439 2120 141 0 0 chr12 106321242 106321540 -37960949 - AluSx SINE Alu -14 298 1 576 329 162 36 chr12 106321540 106322082 -37960407 - L2 LINE L2 -875 2439 1712 213 39 0 0 chr12 106322092 106322118 -37960371 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1711 208 0 0 chr12 106322142 106322445 -37960044 + AluJb SINE Alu 3 305 -7 604 226 7 29 chr12 106322455 106322592 -37959897 + FRAM SINE Alu 1 131 -45 246 352 19 29 chr12 106323574 106323679 -37958810 - L2 LINE L2 -32 3240 3137 466 202 18 70 chr12 106324576 106324690 -37957799 + L2 LINE L2 3201 3308 -5 2167 75 0 4 chr12 106325202 106325468 -37957021 + AluY SINE Alu 38 302 -9 273 339 80 9 chr12 106325478 106325590 -37956899 - L2 LINE L2 -12 3260 3141 959 166 68 10 chr12 106326251 106326456 -37956033 - L1MA4 LINE L1 -4 6296 6080 39 88 0 0 chr12 106326761 106326863 -37955626 + AT_rich Low_complexity Low_complexity 1 102 0 328 311 115 0 chr12 106327978 106328100 -37954389 + L2 LINE L2 3137 3272 0 290 363 55 14 chr12 106329070 106329216 -37953273 + MIR SINE MIR 2 153 -109 437 267 99 0 chr12 106329322 106329453 -37953036 - MIR SINE MIR -113 149 6 261 235 128 29 chr12 106329539 106329641 -37952848 - MIR SINE MIR -70 192 81 225 296 37 12 chr12 106329639 106329720 -37952769 - MIR SINE MIR -87 121 39 * 276 305 88 99 chr12 106330564 106330836 -37951653 + L2 LINE L2 3004 3272 0 225 292 69 56 chr12 106331746 106331890 -37950599 - MIR SINE MIR -88 174 29 185 372 90 43 chr12 106332075 106332263 -37950226 + L2 LINE L2 3028 3224 -48 184 282 0 0 chr12 106332303 106332342 -37950147 + L2 LINE L2 3223 3261 -11 240 214 22 90 chr12 106332354 106332443 -37950046 - MIR SINE MIR -68 194 112 291 372 44 0 chr12 106332534 106332647 -37949842 - L2 LINE L2 0 3272 3155 187 291 55 0 chr12 106333154 106333209 -37949280 + L2 LINE L2 3255 3312 -1 196 317 37 12 chr12 106333768 106333850 -37948639 - MIR SINE MIR -77 185 102 5969 103 10 11 chr12 106334026 106334152 -37948337 + L1PA14 LINE L1 5163 5288 -873 2181 123 0 0 chr12 106334152 106334444 -37948045 + AluSx SINE Alu 5 296 -16 5969 103 10 11 chr12 106334444 106335316 -37947173 + L1PA14 LINE L1 5288 6161 0 2383 95 3 7 chr12 106335327 106335633 -37946856 + AluSq SINE Alu 1 305 -8 986 250 18 5 chr12 106335637 106335857 -37946632 + MIR SINE MIR 31 253 -9 465 293 49 12 chr12 106336031 106336195 -37946294 + MIR SINE MIR 93 262 0 24 32 0 0 chr12 106336297 106336328 -37946161 + AT_rich Low_complexity Low_complexity 1 31 0 9426 96 3 2 chr12 106336330 106337742 -37944747 - L1P LINE L1 -1447 4699 3287 1543 214 87 34 chr12 106338686 106339158 -37943331 + MLT1D LTR MaLR 5 501 -4 3421 155 27 8 chr12 106339445 106340038 -37942451 - MER6A DNA MER2_type 0 605 2 368 268 228 51 chr12 106340316 106340570 -37941919 - L2 LINE L2 -825 2489 2191 390 74 0 0 chr12 106340983 106341037 -37941452 + (TG)n Simple_repeat Simple_repeat 2 55 0 217 287 264 15 chr12 106341710 106341866 -37940623 + MIR SINE MIR 16 206 -56 287 237 0 0 chr12 106342465 106342524 -37939965 + tRNA-Ile-ATT tRNA tRNA 1 59 -18 573 263 45 142 chr12 106342585 106342676 -37939813 - L2 LINE L2 0 3313 3215 186 103 0 0 chr12 106342676 106342705 -37939784 + (TA)n Simple_repeat Simple_repeat 2 30 0 573 263 45 142 chr12 106342705 106343100 -37939389 - L2 LINE L2 -98 3215 2874 1691 175 84 29 chr12 106343101 106343632 -37938857 - MLT2A2 LTR ERVL -1 553 1 2928 271 104 33 chr12 106343634 106344089 -37938400 - L2 LINE L2 -437 2877 2456 234 91 0 0 chr12 106344089 106344122 -37938367 + (TG)n Simple_repeat Simple_repeat 2 34 0 2928 271 104 33 chr12 106344122 106344886 -37937603 - L2 LINE L2 -858 2456 1571 319 351 52 0 chr12 106344913 106345047 -37937442 - L2 LINE L2 0 3313 3173 229 284 0 15 chr12 106346439 106346506 -37935983 + MIR3 SINE MIR 113 178 -30 290 245 24 47 chr12 106347675 106347775 -37934714 + MIR SINE MIR 60 156 -64 350 296 91 111 chr12 106350120 106350922 -37931567 + L2 LINE L2 2456 3272 0 837 139 0 44 chr12 106352037 106352174 -37930315 + FLAM_C SINE Alu 1 131 -2 315 246 97 60 chr12 106352400 106352534 -37929955 + MIR SINE MIR 99 237 -25 2466 93 0 3 chr12 106352718 106353031 -37929458 - AluSx SINE Alu 0 312 1 626 278 38 24 chr12 106353529 106353738 -37928751 - MIR SINE MIR -44 218 7 333 131 0 0 chr12 106354263 106354324 -37928165 + (TC)n Simple_repeat Simple_repeat 2 62 0 495 0 0 0 chr12 106354324 106354379 -37928110 + (CA)n Simple_repeat Simple_repeat 1 55 0 1162 298 92 27 chr12 106354803 106355551 -37926938 + HAL1 LINE L1 1032 1828 -679 343 274 66 38 chr12 106356237 106356509 -37925980 + HAL1b LINE L1 826 2493 -14 232 308 62 55 chr12 106357422 106357568 -37924921 + L2 LINE L2 2909 3055 -217 202 187 107 40 chr12 106357648 106357723 -37924766 + MIR SINE MIR 183 262 0 181 264 19 57 chr12 106357763 106357816 -37924673 + L2 LINE L2 3210 3260 -12 345 243 0 0 chr12 106358582 106358689 -37923800 + CT-rich Low_complexity Low_complexity 2 108 0 812 219 40 0 chr12 106358690 106358841 -37923648 - FRAM SINE Alu -23 153 1 632 141 29 29 chr12 106358844 106359014 -37923475 + CT-rich Low_complexity Low_complexity 1 170 0 238 302 12 12 chr12 106359656 106359742 -37922747 + GA-rich Low_complexity Low_complexity 3 88 0 270 0 0 0 chr12 106359746 106359776 -37922713 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 * 656 0 25 0 chr12 106359775 106359854 -37922635 + (TTTC)n Simple_repeat Simple_repeat 1 81 0 575 214 0 9 chr12 106359860 106359972 -37922517 - FLAM_C SINE Alu -32 111 1 278 325 58 0 chr12 106360969 106361089 -37921400 - MIR SINE MIR -73 189 63 1254 286 156 20 chr12 106361170 106361801 -37920688 + L2 LINE L2 1224 1960 -1354 2898 105 7 16 chr12 106361801 106362247 -37920242 - L1PA11 LINE L1 0 6174 5733 1254 286 156 20 chr12 106362247 106362314 -37920175 + L2 LINE L2 1960 2017 -1297 378 314 148 34 chr12 106362445 106362891 -37919598 - L2 LINE L2 -1114 2200 1704 204 232 53 84 chr12 106362910 106363005 -37919484 - MIR SINE MIR -84 124 33 309 206 228 22 chr12 106363270 106363406 -37919083 - L1ME4a LINE L1 -15 6106 5943 21 0 0 0 chr12 106363510 106363531 -37918958 + AT_rich Low_complexity Low_complexity 1 21 0 2511 252 119 21 chr12 106363627 106364741 -37917748 + L1MEc LINE L1 111 1333 -5063 447 325 68 10 chr12 106364751 106365062 -37917427 - L1ME4a LINE L1 -238 5883 5555 331 235 31 80 chr12 106365196 106365358 -37917131 - L1ME4a LINE L1 -2400 5408 5255 280 333 20 29 chr12 106365929 106366031 -37916458 + MIR3 SINE MIR 107 207 -1 23 54 0 0 chr12 106366613 106366650 -37915839 + AT_rich Low_complexity Low_complexity 1 37 0 517 216 183 7 chr12 106367650 106367803 -37914686 + MER5A DNA MER1_type 10 189 0 184 390 53 0 chr12 106367954 106368049 -37914440 - L2 LINE L2 -18 3254 3155 543 289 13 85 chr12 106368265 106368611 -37913878 - L2 LINE L2 -280 2992 2668 318 333 283 4 chr12 106368617 106368854 -37913635 - L2 LINE L2 -426 2888 2586 189 0 0 0 chr12 106369380 106369401 -37913088 + (T)n Simple_repeat Simple_repeat 1 21 0 603 125 0 0 chr12 106369652 106369756 -37912733 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 6288 141 15 18 chr12 106370734 106372262 -37910227 - L1MA3 LINE L1 0 7724 6195 14956 195 22 9 chr12 106372270 106375134 -37907355 - L1MA3 LINE L1 -4653 2912 13 31 0 0 0 chr12 106375584 106375615 -37906874 + AT_rich Low_complexity Low_complexity 1 31 0 273 311 61 38 chr12 106375621 106375753 -37906736 - MIR3 SINE MIR -37 171 37 235 368 0 13 chr12 106375813 106375889 -37906600 + MIR3 SINE MIR 9 83 -125 644 157 0 43 chr12 106375928 106376043 -37906446 - Tigger3(Golem) DNA MER2_type 0 3029 2920 26 30 0 0 chr12 106376043 106376076 -37906413 + AT_rich Low_complexity Low_complexity 1 33 0 407 281 30 0 chr12 106376737 106376872 -37905617 - LTR67 LTR ERVL -14 543 405 500 279 52 13 chr12 106377258 106377412 -37905077 - MIR SINE MIR -97 165 6 268 341 57 65 chr12 106377673 106377902 -37904587 - L2 LINE L2 -221 3051 2825 28 0 0 0 chr12 106378379 106378407 -37904082 + AT_rich Low_complexity Low_complexity 1 28 0 624 350 56 35 chr12 106378856 106379341 -37903148 + L2 LINE L2 1490 1984 -1330 510 274 0 37 chr12 106380945 106381080 -37901409 - MIR3 SINE MIR -7 201 72 2674 244 57 49 chr12 106481621 106483013 -37799476 + L1PA13 LINE L1 196 1801 -4986 2727 48 8 6 chr12 106483113 106483455 -37799034 + L1PA5 LINE L1 5801 6146 -8 369 0 0 0 chr12 106483455 106483496 -37798993 + (TA)n Simple_repeat Simple_repeat 2 42 0 5156 253 58 28 chr12 106483505 106484913 -37797576 - MSTC-int LTR MaLR -284 1451 2 1185 157 0 30 chr12 106484915 106485022 -37797467 - MSTC LTR MaLR 0 428 328 2623 96 6 8 chr12 106485022 106485387 -37797102 - THE1B LTR MaLR 0 364 1 1185 157 0 30 chr12 106485387 106485477 -37797012 - MSTC LTR MaLR -100 328 237 262 302 19 22 chr12 106485641 106485770 -37796719 - MIR SINE MIR -64 144 19 1342 87 0 0 chr12 106486340 106486513 -37795976 - AluY SINE Alu -8 303 131 462 256 173 51 chr12 106487488 106487679 -37794810 + L1ME4a LINE L1 5541 5707 -414 1128 170 0 26 chr12 106487679 106487908 -37794581 + L1MA4 LINE L1 6078 6300 0 462 256 173 51 chr12 106487908 106488127 -37794362 + L1ME4a LINE L1 5707 6001 -120 414 53 0 0 chr12 106488166 106488223 -37794266 + (CA)n Simple_repeat Simple_repeat 1 57 0 230 372 51 0 chr12 106488246 106488324 -37794165 - L2 LINE L2 -76 3196 3115 245 309 95 16 chr12 106488347 106488473 -37794016 + L2 LINE L2 3171 3306 -7 277 339 39 24 chr12 106488510 106488637 -37793852 - L2 LINE L2 -191 3081 2953 25 0 0 0 chr12 106491893 106491918 -37790571 + AT_rich Low_complexity Low_complexity 1 25 0 194 0 39 0 chr12 106492033 106492059 -37790430 + (TC)n Simple_repeat Simple_repeat 1 27 0 184 234 0 43 chr12 106492143 106492190 -37790299 + L2 LINE L2 3218 3262 -10 279 198 12 37 chr12 106493425 106493506 -37788983 + (TA)n Simple_repeat Simple_repeat 2 80 0 232 236 22 0 chr12 106493554 106493643 -37788846 + (TA)n Simple_repeat Simple_repeat 1 91 0 2144 125 0 0 chr12 106493720 106494017 -37788472 + AluSx SINE Alu 1 297 -15 2592 114 3 0 chr12 106495943 106496303 -37786186 + THE1B LTR MaLR 4 364 0 10613 100 15 58 chr12 106496303 106497949 -37784540 + THE1B-int LTR MaLR 1 1575 -5 2444 113 32 0 chr12 106497965 106498310 -37784179 + THE1B LTR MaLR 1 356 -8 1677 187 10 0 chr12 106498322 106498611 -37783878 - AluJb SINE Alu -20 292 1 2667 228 73 32 chr12 106500081 106501001 -37781488 - L1ME1 LINE L1 0 6166 5174 2840 16 0 3 chr12 106501001 106501320 -37781169 - AluYb8 SINE Alu 0 318 1 2667 228 73 32 chr12 106501320 106501685 -37780804 - L1ME1 LINE L1 -992 5174 4826 307 267 79 0 chr12 106501818 106501919 -37780570 - MIR SINE MIR -80 182 74 3359 130 18 30 chr12 106502692 106503028 -37779461 - Tigger1 DNA MER2_type 0 2418 2090 2442 87 0 0 chr12 106503028 106503339 -37779150 - AluY SINE Alu 0 311 1 3359 130 18 30 chr12 106503339 106503565 -37778924 - Tigger1 DNA MER2_type -328 2090 1863 11113 138 20 18 chr12 106503761 106504683 -37777806 - Tigger1 DNA MER2_type -550 1868 949 2458 132 3 21 chr12 106504683 106505063 -37777426 - THE1C LTR MaLR -2 373 1 11113 138 20 18 chr12 106505063 106506005 -37776484 - Tigger1 DNA MER2_type -1469 949 1 246 285 85 60 chr12 106506181 106506381 -37776108 - L1MC/D LINE L1 -1991 5817 5613 350 292 15 23 chr12 106506384 106506514 -37775975 + L1ME LINE L1 5672 5800 -370 32 51 0 38 chr12 106506579 106506658 -37775831 + AT_rich Low_complexity Low_complexity 1 76 0 197 324 40 27 chr12 106507367 106507441 -37775048 - L2 LINE L2 -13 3259 3185 670 210 141 125 chr12 106507441 106507832 -37774657 - MLT1E1-int LTR MaLR -98 1273 877 599 281 10 31 chr12 106507912 106508108 -37774381 - MLT1E1-int LTR MaLR -484 887 696 1223 250 47 24 chr12 106508295 106508692 -37773797 - MLT1E1-int LTR MaLR -728 643 119 1119 218 132 41 chr12 106508692 106509055 -37773434 + MSTD LTR MaLR 1 396 0 1223 250 47 24 chr12 106509055 106509139 -37773350 - MLT1E1-int LTR MaLR -1252 119 38 1002 225 48 30 chr12 106509168 106509574 -37772915 - MLT1E1 LTR MaLR -40 614 151 189 0 0 0 chr12 106510484 106510505 -37771984 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3994 154 41 9 chr12 106511194 106511876 -37770613 + MER39 LTR ERV1 1 704 -3 384 275 140 51 chr12 106512186 106512422 -37770067 + MER39-int LTR ERV1 366 622 -5709 1587 209 46 53 chr12 106512440 106513047 -37769442 + MER39-int LTR ERV1 283 607 -4329 234 135 0 0 chr12 106513053 106513090 -37769399 - MER31A LTR ERV1 -182 303 267 1148 256 7 39 chr12 106513117 106513426 -37769063 + MER39-int LTR ERV1 1927 2225 -4106 289 148 0 19 chr12 106513566 106513620 -37768869 + MER39-int LTR ERV1 438 490 -7047 263 239 26 68 chr12 106513626 106513743 -37768746 + MER39-int LTR ERV1 3084 3195 -4342 274 231 88 22 chr12 106513931 106514022 -37768467 + MER39-int LTR ERV1 778 874 -4062 281 224 159 28 chr12 106514054 106514161 -37768328 + MER67D LTR ERV1 98 218 -296 434 153 64 30 chr12 106514363 106514482 -37768007 + MER39-int LTR ERV1 1405 3220 -3111 373 222 12 0 chr12 106514660 106514741 -37767748 + MER39-int LTR ERV1 3265 3346 -2985 479 184 0 79 chr12 106514796 106514910 -37767579 + MER39-int LTR ERV1 3348 3452 -2879 502 220 117 32 chr12 106515080 106515434 -37767055 + MER39-int LTR ERV1 1694 1963 -2973 5601 171 15 6 chr12 106515640 106516702 -37765787 + L1MA6 LINE L1 5219 6290 -10 2122 213 70 79 chr12 106516704 106517067 -37765422 + MER39-int LTR ERV1 3720 4085 -2246 2277 128 0 0 chr12 106517067 106517380 -37765109 - AluSq SINE Alu 0 313 1 2122 213 70 79 chr12 106517380 106518179 -37764310 + MER39-int LTR ERV1 4085 4872 -1459 558 103 13 0 chr12 106518279 106518357 -37764132 + AluSc SINE Alu 209 287 -22 2590 194 28 69 chr12 106518357 106519158 -37763331 + MER39-int LTR ERV1 4131 6183 -148 3462 151 99 8 chr12 106519214 106519862 -37762627 + MER39 LTR ERV1 1 707 0 495 340 50 35 chr12 106521445 106521786 -37760703 + L2 LINE L2 2158 2503 -811 1754 211 82 15 chr12 106522147 106522620 -37759869 + MLT1D LTR MaLR 1 505 0 556 255 96 0 chr12 106522907 106523064 -37759425 + MIR SINE MIR 85 256 -6 194 279 82 0 chr12 106523076 106523137 -37759352 + L2 LINE L2 3111 3176 -96 216 67 0 0 chr12 106524133 106524163 -37758326 + (TC)n Simple_repeat Simple_repeat 1 30 0 1033 218 77 4 chr12 106524238 106524486 -37758003 + L1ME4a LINE L1 5395 5660 -506 1609 228 24 34 chr12 106524886 106525299 -37757190 + MLT1C LTR MaLR 59 467 0 202 250 59 15 chr12 106526262 106526330 -37756159 - MIR SINE MIR -70 192 122 3661 157 15 24 chr12 106526520 106527201 -37755288 - L1MB1 LINE L1 0 6168 5494 639 264 37 2 chr12 106527245 106527413 -37755076 - MIR SINE MIR -47 215 45 22 0 0 0 chr12 106527533 106527555 -37754934 + AT_rich Low_complexity Low_complexity 1 22 0 3058 134 36 33 chr12 106528135 106528740 -37753749 + MER4B LTR ERV1 1 774 -5 24 32 0 0 chr12 106529938 106529969 -37752520 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr12 106530103 106530128 -37752361 + AT_rich Low_complexity Low_complexity 1 25 0 2303 151 30 5 chr12 106530290 106530693 -37751796 - L1MA4 LINE L1 -36 6264 5852 26 30 0 0 chr12 106530756 106530789 -37751700 + AT_rich Low_complexity Low_complexity 1 33 0 8725 193 17 5 chr12 106530789 106533816 -37748673 - L1PA16 LINE L1 0 6166 3092 387 0 0 0 chr12 106533816 106533859 -37748630 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 478 232 202 17 chr12 106533870 106534103 -37748386 + L1ME4a LINE L1 5832 6107 -14 * 5089 228 23 22 chr12 106534085 106534201 -37748288 - L1PA16 LINE L1 -3041 3105 2991 1160 171 0 0 chr12 106534201 106534400 -37748089 + L1PA16 LINE L1 5968 6166 0 5089 228 23 22 chr12 106534400 106535372 -37747117 - L1PA16 LINE L1 -3155 2991 2012 2294 106 42 25 chr12 106535372 106535730 -37746759 + THE1B LTR MaLR 1 364 0 5089 228 23 22 chr12 106535730 106536030 -37746459 - L1PA16 LINE L1 -4134 2012 1714 2297 260 42 3 chr12 106536056 106536707 -37745782 - L1M4 LINE L1 -1830 4316 3641 225 188 29 43 chr12 106536703 106536772 -37745717 - L1MEc LINE L1 -5718 678 611 * 556 343 34 10 chr12 106536817 106537021 -37745468 - LTR16A LTR ERVL -2 448 240 622 320 81 29 chr12 106537198 106537542 -37744947 - L2 LINE L2 -1665 1649 1288 317 316 137 0 chr12 106537542 106537637 -37744852 - L2 LINE L2 -2127 1187 1080 400 290 7 7 chr12 106537827 106537982 -37744507 + L1M4 LINE L1 3763 3917 -2229 195 216 0 0 chr12 106538139 106538176 -37744313 + MIR SINE MIR 120 156 -106 25 31 0 0 chr12 106538369 106538401 -37744088 + AT_rich Low_complexity Low_complexity 1 32 0 30 77 0 0 chr12 106538818 106538883 -37743606 + AT_rich Low_complexity Low_complexity 1 65 0 390 192 246 15 chr12 106538963 106539093 -37743396 - MIR3 SINE MIR -9 199 40 21 0 0 0 chr12 106539762 106539783 -37742706 + AT_rich Low_complexity Low_complexity 1 21 0 407 175 113 81 chr12 106540373 106540489 -37742000 - L1MC5 LINE L1 -30 7931 7807 2430 71 3 0 chr12 106540489 106540784 -37741705 - AluY SINE Alu -15 296 1 407 175 113 81 chr12 106540784 106540827 -37741662 - L1MC5 LINE L1 -154 7807 7767 21 0 0 0 chr12 106540838 106540859 -37741630 + AT_rich Low_complexity Low_complexity 1 21 0 1107 264 137 18 chr12 106541189 106541576 -37740913 - LTR16A LTR ERVL 0 450 18 608 200 194 13 chr12 106541651 106541832 -37740657 - MIR SINE MIR -16 246 30 202 303 92 37 chr12 106542237 106542346 -37740143 + MIR SINE MIR 25 139 -69 1857 214 88 8 chr12 106542640 106543108 -37739381 + MLT1D LTR MaLR 1 505 0 1708 167 66 10 chr12 106543835 106544123 -37738366 - AluJo SINE Alu 0 312 9 197 265 96 48 chr12 106544141 106544224 -37738265 - L2 LINE L2 -37 3276 3190 619 319 156 41 chr12 106545878 106546489 -37736000 + HAL1 LINE L1 23 703 -1804 247 153 97 56 chr12 106546613 106546685 -37735804 + HAL1 LINE L1 961 1035 -1472 293 302 104 6 chr12 106546750 106546932 -37735557 + HAL1 LINE L1 1182 1381 -1126 737 243 57 40 chr12 106547241 106547488 -37735001 - MIR SINE MIR 0 262 12 216 0 0 0 chr12 106548065 106548089 -37734400 + (A)n Simple_repeat Simple_repeat 1 24 0 246 326 11 0 chr12 106548089 106548184 -37734305 + L2 LINE L2 2714 2809 -505 440 291 89 32 chr12 106548311 106548558 -37733931 + MIR SINE MIR 1 261 -1 584 296 109 13 chr12 106548732 106548962 -37733527 + MIR SINE MIR 11 262 0 204 286 186 0 chr12 106549075 106549145 -37733344 + L2 LINE L2 3186 3268 -4 276 323 25 44 chr12 106549638 106549796 -37732693 + L3 LINE CR1 1279 1433 -144 258 143 0 0 chr12 106549796 106549845 -37732644 + (TG)n Simple_repeat Simple_repeat 2 50 0 278 302 101 15 chr12 106549906 106550057 -37732432 - MIR SINE MIR -62 146 17 2153 116 13 10 chr12 106550519 106550830 -37731659 - AluSx SINE Alu 0 312 1 501 309 98 67 chr12 106550870 106551040 -37731449 + L2 LINE L2 2678 2841 -472 5179 63 5 8 chr12 106551040 106551707 -37730782 + PABL_B LTR ERV1 3 667 0 501 309 98 67 chr12 106551707 106551825 -37730664 + L2 LINE L2 2841 2954 -359 1297 220 84 96 chr12 106551825 106552338 -37730151 + MLT1J LTR MaLR 3 509 -2 501 309 98 67 chr12 106552338 106552652 -37729837 + L2 LINE L2 2954 3304 -9 197 65 32 0 chr12 106552652 106552683 -37729806 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 23 0 0 0 chr12 106554600 106554623 -37727866 + AT_rich Low_complexity Low_complexity 1 23 0 215 306 0 28 chr12 106554695 106554767 -37727722 + GA-rich Low_complexity Low_complexity 2 71 0 225 121 0 0 chr12 106554820 106554853 -37727636 - MER3 DNA MER1_type -160 49 17 1912 195 49 89 chr12 106555067 106555653 -37726836 - L1ME1 LINE L1 -289 5877 5318 2287 58 0 31 chr12 106555653 106555946 -37726543 - AluY SINE Alu -15 296 13 1912 195 49 89 chr12 106555946 106556009 -37726480 - L1ME1 LINE L1 -848 5318 5254 2132 227 61 22 chr12 106556020 106556690 -37725799 - L1ME1 LINE L1 -1031 5115 4420 445 168 11 11 chr12 106556709 106556804 -37725685 - L1M4 LINE L1 -1628 4518 4424 962 161 83 5 chr12 106556884 106557025 -37725464 - L1MA9 LINE L1 -4 6308 6145 351 0 0 0 chr12 106557025 106557064 -37725425 + (TG)n Simple_repeat Simple_repeat 1 39 0 962 161 83 5 chr12 106557064 106557127 -37725362 - L1MA9 LINE L1 -167 6145 6088 2662 123 26 19 chr12 106557231 106557652 -37724837 + MSTC LTR MaLR 1 424 -4 225 319 34 0 chr12 106557672 106557791 -37724698 + L1MB2 LINE L1 4487 4609 -1537 5160 157 34 8 chr12 106557794 106558920 -37723569 + L1MB2 LINE L1 5014 6164 -7 2823 199 29 44 chr12 106559344 106560002 -37722487 + MER82 DNA MER2_type 1 648 -5 1979 125 24 21 chr12 106560171 106560458 -37722031 + AluSx SINE Alu 1 288 -24 564 82 0 0 chr12 106560483 106560548 -37721941 + THE1C LTR MaLR 1 65 -310 3058 82 25 2 chr12 106560548 106560951 -37721538 + MLT2A2 LTR ERVL 1 412 -41 203 146 24 0 chr12 106560951 106560992 -37721497 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 237 139 0 0 chr12 106560993 106561036 -37721453 + (GA)n Simple_repeat Simple_repeat 1 43 0 244 53 105 0 chr12 106561036 106561074 -37721415 + MLT2A2 LTR ERVL 412 453 0 * 1276 131 10 24 chr12 106561074 106561270 -37721219 + THE1C LTR MaLR 62 254 -121 7443 110 198 40 chr12 106561279 106562643 -37719846 + THE1C-int LTR MaLR 1 1580 0 2232 127 24 8 chr12 106562643 106563012 -37719477 + THE1C LTR MaLR 1 375 0 2095 133 0 0 chr12 106563037 106563331 -37719158 + AluSx SINE Alu 1 294 -18 27 0 0 0 chr12 106563335 106563362 -37719127 + AT_rich Low_complexity Low_complexity 1 27 0 1693 209 81 8 chr12 106563483 106563852 -37718637 + MSTD LTR MaLR 1 396 0 207 220 0 0 chr12 106563872 106563922 -37718567 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 242 293 10 10 chr12 106564069 106564168 -37718321 - HAL1b LINE L1 -7 1341 1243 236 321 123 28 chr12 106564397 106564503 -37717986 - MIR SINE MIR -80 182 67 188 318 163 23 chr12 106564567 106564696 -37717793 + L2 LINE L2 3167 3313 0 298 347 0 0 chr12 106565119 106565217 -37717272 + MIR SINE MIR 165 262 0 1460 193 70 142 chr12 106565505 106565685 -37716804 - MLT1D LTR MaLR 0 505 314 1707 123 0 4 chr12 106565685 106565921 -37716568 + AluSx SINE Alu 5 239 -73 1460 193 70 142 chr12 106565921 106566284 -37716205 - MLT1D LTR MaLR -191 314 1 3023 238 52 76 chr12 106566284 106567814 -37714675 - MLT1D-int LTR MaLR 0 1371 2 2150 193 87 2 chr12 106567820 106568281 -37714208 - MLT1D LTR MaLR -5 500 1 289 315 108 9 chr12 106568593 106568704 -37713785 - MIR3 SINE MIR -2 206 85 23 0 0 0 chr12 106568726 106568749 -37713740 + AT_rich Low_complexity Low_complexity 1 23 0 2295 89 13 0 chr12 106569524 106569827 -37712662 + AluSg SINE Alu 1 307 -3 504 278 57 32 chr12 106570372 106570620 -37711869 - L1ME4a LINE L1 -257 5864 5611 193 200 0 0 chr12 106571011 106571046 -37711443 + L2 LINE L2 3279 3313 0 727 263 84 0 chr12 106571055 106571234 -37711255 - MER58A DNA MER1_type 0 224 31 1576 192 77 27 chr12 106571317 106571660 -37710829 + MSTD LTR MaLR 33 396 0 1701 204 39 0 chr12 106571952 106572285 -37710204 + MER7A DNA MER2_type 3 346 0 556 264 124 22 chr12 106572709 106572887 -37709602 + MIR SINE MIR 46 241 -21 250 196 36 0 chr12 106574447 106574503 -37707986 + L2 LINE L2 291 348 -2966 296 314 199 13 chr12 106574678 106574834 -37707655 - L2 LINE L2 -4 3309 3125 17476 183 20 45 chr12 106574839 106581882 -37700607 - L1PA16 LINE L1 -2 6867 2 486 188 10 0 chr12 106581883 106581984 -37700505 - L1MEc LINE L1 -1582 4633 4532 476 338 56 31 chr12 106582012 106582360 -37700129 - L2 LINE L2 -214 3099 2689 198 71 0 0 chr12 106582409 106582437 -37700052 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 11019 81 5 3 chr12 106582441 106584739 -37697750 - L1PA8 LINE L1 -13 6159 3855 300 70 0 0 chr12 106585029 106585072 -37697417 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 201 74 0 0 chr12 106585077 106585104 -37697385 + (CCTA)n Simple_repeat Simple_repeat 1 27 0 589 165 25 8 chr12 106585342 106585463 -37697026 - L1MA9 LINE L1 -168 6144 6022 2102 119 0 11 chr12 106585502 106585821 -37696668 + AluSx SINE Alu 1 316 0 2210 257 137 16 chr12 106585827 106587034 -37695455 - L1MEc LINE L1 -1784 4431 2972 854 274 80 18 chr12 106587013 106587575 -37694914 - L1MEc LINE L1 -4938 1458 862 * 918 192 0 13 chr12 106587619 106587775 -37694714 - FRAM SINE Alu -23 153 1 979 325 31 49 chr12 106587785 106588502 -37693987 - L1MEc LINE L1 -5637 759 56 37 39 0 0 chr12 106588920 106588971 -37693518 + AT_rich Low_complexity Low_complexity 1 51 0 359 320 127 20 chr12 106591569 106591766 -37690723 + HAL1 LINE L1 1257 1474 -1033 369 317 103 72 chr12 106591904 106592264 -37690225 + HAL1b LINE L1 393 763 -585 314 263 84 89 chr12 106592271 106592651 -37689838 + L1ME4a LINE L1 4193 4570 -1576 188 301 118 11 chr12 106592709 106592802 -37689687 + L2 LINE L2 3208 3310 -3 673 295 128 14 chr12 106593318 106593877 -37688612 + L1ME4a LINE L1 5255 5875 -246 22 56 0 0 chr12 106593932 106593968 -37688521 + AT_rich Low_complexity Low_complexity 1 36 0 315 247 81 77 chr12 106594087 106594322 -37688167 + L1ME4a LINE L1 5629 5864 -257 2378 118 30 3 chr12 106594376 106594741 -37687748 + THE1C LTR MaLR 1 375 0 2115 97 0 4 chr12 106596142 106596421 -37686068 + AluSg SINE Alu 12 289 -21 1771 154 3 7 chr12 106597747 106598039 -37684450 - AluJb SINE Alu -11 301 11 302 330 34 0 chr12 106598094 106598212 -37684277 + HAL1 LINE L1 1453 1574 -933 11613 111 33 12 chr12 106598253 106598598 -37683891 + L1PB1 LINE L1 1 337 -6526 1607 193 24 0 chr12 106598598 106598894 -37683595 + AluSx SINE Alu 1 303 -9 11613 111 33 12 chr12 106598894 106600313 -37682176 + L1PB1 LINE L1 337 1801 -5062 * 12764 185 32 15 chr12 106600303 106601305 -37681184 + L1PB1 LINE L1 2947 3930 -2937 1999 141 33 43 chr12 106601305 106601673 -37680816 - THE1B LTR MaLR 0 364 1 12764 185 32 15 chr12 106601673 106604158 -37678331 + L1PB1 LINE L1 3930 6497 -370 2456 104 20 0 chr12 106604284 106604641 -37677848 + L1PB1 LINE L1 6499 6862 -5 755 242 23 116 chr12 106604668 106605087 -37677402 + MER57A LTR ERV1 13 403 0 3040 290 69 26 chr12 106605223 106606992 -37675497 - L1MEc LINE L1 -4391 2005 80 1568 171 21 36 chr12 106607078 106607358 -37675131 + AluJo SINE Alu 12 287 -25 288 351 101 14 chr12 106607757 106607905 -37674584 - L2 LINE L2 -246 3067 2907 1184 304 50 68 chr12 106607905 106608517 -37673972 + MLT1E LTR MaLR 1 623 30 1889 149 27 35 chr12 106608517 106608893 -37673596 - THE1C LTR MaLR -2 373 1 10263 114 42 6 chr12 106608893 106610417 -37672072 - THE1C-int LTR MaLR 0 1580 2 1184 304 50 68 chr12 106610417 106610531 -37671958 + MLT1E LTR MaLR 475 590 -3 2165 314 31 60 chr12 106610549 106610990 -37671499 - L2 LINE L2 -411 2903 2451 2269 117 7 0 chr12 106610990 106611298 -37671191 + AluSx SINE Alu 1 310 -2 2165 314 31 60 chr12 106611298 106612129 -37670360 - L2 LINE L2 -863 2451 1668 1516 75 5 0 chr12 106612383 106612571 -37669918 - AluY SINE Alu -13 298 110 2197 117 0 10 chr12 106612672 106612970 -37669519 + AluSx SINE Alu 5 299 -13 24 0 0 0 chr12 106613241 106613265 -37669224 + AT_rich Low_complexity Low_complexity 1 24 0 562 298 153 21 chr12 106613266 106613508 -37668981 - L3 LINE CR1 -8 1569 1296 1922 80 19 0 chr12 106614148 106614411 -37668078 + L1PA10 LINE L1 5897 6164 -4 1366 117 0 0 chr12 106614419 106614625 -37667864 + L1PA16 LINE L1 5959 6164 -2 6095 167 22 13 chr12 106614834 106616438 -37666051 + L1MC2 LINE L1 4724 6343 -1 585 266 141 32 chr12 106616497 106616866 -37665623 + L1MC4a LINE L1 5980 6388 -1420 228 316 11 11 chr12 106616956 106617051 -37665438 + L1MC4 LINE L1 6463 6557 -1485 223 352 38 19 chr12 106617216 106617321 -37665168 + L2 LINE L2 2935 3041 -231 197 116 0 47 chr12 106617558 106617601 -37664888 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 2327 152 31 0 chr12 106618812 106619200 -37663289 - MER44D DNA MER2_type 0 605 334 347 136 51 0 chr12 106619202 106619261 -37663228 - MER44D DNA MER2_type -643 62 1 225 143 163 0 chr12 106619751 106619800 -37662689 - MLT1K LTR MaLR -21 567 511 7107 112 5 4 chr12 106619905 106621059 -37661430 - L1MA3 LINE L1 0 6305 5149 1326 174 0 9 chr12 106621063 106621275 -37661214 - AluJb SINE Alu -18 294 85 1371 172 8 4 chr12 106621275 106621531 -37660958 - L1MA3 LINE L1 -981 5165 4909 301 240 0 0 chr12 106621754 106621804 -37660685 + MER81 DNA DNA 1 50 -64 374 303 123 87 chr12 106622007 106622364 -37660125 + L2 LINE L2 2895 3264 -8 259 188 14 14 chr12 106623034 106623103 -37659386 + (CA)n Simple_repeat Simple_repeat 2 70 0 1457 307 121 3 chr12 106623349 106624029 -37658460 + HAL1 LINE L1 14 773 -1734 1371 273 150 33 chr12 106624019 106624857 -37657632 + HAL1 LINE L1 1511 2446 -61 * 23 0 0 0 chr12 106624857 106624880 -37657609 + AT_rich Low_complexity Low_complexity 1 23 0 1943 222 71 55 chr12 106625043 106625623 -37656866 + MLT1E LTR MaLR 1 589 -4 2144 184 29 39 chr12 106626883 106627393 -37655096 - MLT1D LTR MaLR 0 505 1 425 294 117 11 chr12 106627938 106628130 -37654359 - MIR SINE MIR -6 256 40 1258 117 31 0 chr12 106629806 106630002 -37652487 - L1PA13 LINE L1 -4 6159 5958 4758 95 13 1 chr12 106630002 106630694 -37651795 + L1PA13 LINE L1 5277 5976 -187 918 222 36 27 chr12 106630792 106631017 -37651472 + MLT1D LTR MaLR 1 227 -278 2070 242 33 87 chr12 106631017 106631729 -37650760 - MLT1D-int LTR MaLR -62 1673 661 2199 219 74 55 chr12 106631787 106632421 -37650068 - MLT1D-int LTR MaLR -712 659 14 1439 206 47 78 chr12 106632426 106632872 -37649617 - MLT1D LTR MaLR 0 505 74 2856 162 14 18 chr12 106632872 106633353 -37649136 + Tigger1 DNA MER2_type 2 482 -1936 1913 149 3 31 chr12 106633353 106633674 -37648815 + AluSx SINE Alu 1 312 0 2856 162 14 18 chr12 106633674 106633697 -37648792 + Tigger1 DNA MER2_type 482 504 -1914 3036 69 101 2 chr12 106633697 106634105 -37648384 + LTR7 LTR ERV1 1 448 -2 20571 90 13 21 chr12 106634107 106636415 -37646074 + HERVH LTR ERV1 1 2282 -5431 2510 50 10 0 chr12 106636415 106636715 -37645774 - AluY SINE Alu -8 303 1 20571 90 13 21 chr12 106636715 106637413 -37645076 + HERVH LTR ERV1 2282 2984 -4729 875 133 20 13 chr12 106637410 106637560 -37644929 + HERVH LTR ERV1 3140 3290 -4423 * 7868 123 19 5 chr12 106637550 106639252 -37643237 + HERVH LTR ERV1 3492 5286 -1805 1391 130 23 0 chr12 106639253 106639468 -37643021 + HERVH LTR ERV1 5600 5819 -1894 2375 110 48 5 chr12 106639468 106639842 -37642647 + HERVH LTR ERV1 7324 7713 0 3121 66 93 2 chr12 106639843 106640253 -37642236 + LTR7 LTR ERV1 2 448 -2 6646 97 23 28 chr12 106640253 106641234 -37641255 + Tigger1 DNA MER2_type 498 1474 -944 27570 132 13 17 chr12 106641234 106647456 -37635033 + L1PA8A LINE L1 4 6262 -184 859 207 0 0 chr12 106647456 106647601 -37634888 + Tigger1 DNA MER2_type 2274 2418 0 249 214 18 18 chr12 106647601 106647651 -37634838 - MLT1D LTR MaLR -430 75 26 355 296 90 16 chr12 106647665 106647854 -37634635 - L1M4b LINE L1 -4714 2424 2222 2090 216 91 115 chr12 106647893 106648823 -37633666 - L1M4b LINE L1 -5125 1730 670 183 80 0 0 chr12 106648823 106648848 -37633641 + (CAAGT)n Simple_repeat Simple_repeat 5 29 0 2090 216 91 115 chr12 106648848 106649415 -37633074 - L1M4b LINE L1 -6185 670 91 1049 163 0 22 chr12 106649439 106649623 -37632866 - AluSp SINE Alu 0 313 134 2223 121 0 0 chr12 106649623 106649929 -37632560 - AluSx SINE Alu -1 311 6 414 0 0 0 chr12 106649929 106649975 -37632514 + (TG)n Simple_repeat Simple_repeat 2 47 0 316 197 136 0 chr12 106649978 106650044 -37632445 - L1M4b LINE L1 -6774 85 11 2386 226 74 13 chr12 106650057 106651254 -37631235 + L1MD3 LINE L1 4859 5823 -343 300 262 82 25 chr12 106651604 106651726 -37630763 + MLT1I LTR MaLR 21 135 -274 613 309 9 9 chr12 106651996 106652206 -37630283 - MIR SINE MIR -6 256 47 337 351 25 45 chr12 106652784 106652834 -37629655 + L2 LINE L2 1634 1683 -1631 2138 102 0 4 chr12 106652834 106653109 -37629380 - AluSq SINE Alu -39 274 1 337 351 25 45 chr12 106653109 106653417 -37629072 + L2 LINE L2 1683 1985 -1329 207 313 117 31 chr12 106653434 106653562 -37628927 + L2 LINE L2 2358 2496 -818 7657 171 26 9 chr12 106653637 106655159 -37627330 + L1MA3 LINE L1 2992 4539 -1607 418 248 45 0 chr12 106755175 106755322 -37527167 + L1P LINE L1 3695 3850 -2296 1625 228 24 34 chr12 106755610 106756023 -37526466 - MLT1C LTR MaLR 0 467 59 185 292 0 0 chr12 106756084 106756132 -37526357 + MIR3 SINE MIR 160 207 -1 2128 241 69 1 chr12 106757118 106757807 -37524682 + MER69 DNA AcHobo 27 2205 -321 1534 195 98 2 chr12 106757810 106758210 -37524279 - Charlie5 DNA MER1_type 0 2623 2186 6317 144 20 18 chr12 106758339 106759790 -37522699 + L1MA3 LINE L1 4850 6305 0 1285 256 31 3 chr12 106760162 106760479 -37522010 + MER58B DNA MER1_type 1 326 -15 2266 64 0 0 chr12 106760519 106760827 -37521662 + AluY SINE Alu 1 308 0 832 241 123 14 chr12 106760893 106761105 -37521384 - MER45C DNA AcHobo -22 931 697 337 335 208 21 chr12 106761079 106761315 -37521174 - MER45C DNA AcHobo -541 412 133 * 2383 120 6 0 chr12 106761348 106761698 -37520791 - L1PA16 LINE L1 -174 5992 5641 364 245 19 44 chr12 106761781 106761940 -37520549 - L1M4 LINE L1 -1244 4902 4748 329 230 0 70 chr12 106762037 106762137 -37520352 - L2 LINE L2 -1 3312 3220 266 296 72 40 chr12 106762157 106762407 -37520082 - HAL1 LINE L1 -1408 1099 842 235 314 42 34 chr12 106763241 106763359 -37519130 - MIR SINE MIR -16 246 128 434 156 26 0 chr12 106764283 106764360 -37518129 + MER116 DNA Mariner 1 79 -1 3660 54 13 2 chr12 106764495 106764957 -37517532 + L1PA7 LINE L1 5674 6140 -14 5293 150 48 13 chr12 106765635 106765825 -37516664 - L1MD1 LINE L1 0 6242 6060 2378 66 0 0 chr12 106765825 106766114 -37516375 - AluY SINE Alu -22 289 1 5293 150 48 13 chr12 106766114 106766991 -37515498 - L1MD1 LINE L1 -182 6060 5137 2198 252 52 10 chr12 106767213 106767887 -37514602 - L1MD1 LINE L1 -1012 5134 4433 997 281 59 35 chr12 106767887 106768514 -37513975 + L1M1 LINE L1 2663 3304 -4261 * 3160 258 65 20 chr12 106768469 106768647 -37513842 - L1MD1 LINE L1 -1715 4431 4262 216 0 0 0 chr12 106768647 106768671 -37513818 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3160 258 65 20 chr12 106768671 106769633 -37512856 - L1MD1 LINE L1 -1884 4262 3240 1548 207 3 7 chr12 106769801 106770096 -37512393 - AluJo SINE Alu -18 294 1 277 339 47 0 chr12 106771132 106771259 -37511230 + MIR SINE MIR 120 252 -10 1999 154 78 32 chr12 106771868 106772277 -37510212 + MSTA LTR MaLR 1 428 0 307 385 20 78 chr12 106772450 106772808 -37509681 - L2 LINE L2 -81 3191 2855 206 250 59 15 chr12 106773881 106773949 -37508540 - MIR SINE MIR -70 192 122 3651 159 15 24 chr12 106774139 106774820 -37507669 - L1MB1 LINE L1 0 6168 5494 641 264 37 2 chr12 106774864 106775032 -37507457 - MIR SINE MIR -47 215 45 22 0 0 0 chr12 106775152 106775174 -37507315 + AT_rich Low_complexity Low_complexity 1 22 0 3055 134 36 33 chr12 106775754 106776359 -37506130 + MER4B LTR ERV1 1 774 -5 24 32 0 0 chr12 106777556 106777587 -37504902 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr12 106777722 106777747 -37504742 + AT_rich Low_complexity Low_complexity 1 25 0 274 339 39 24 chr12 106778324 106778451 -37504038 + L2 LINE L2 2953 3081 -191 250 309 95 16 chr12 106778489 106778615 -37503874 - L2 LINE L2 -7 3306 3171 256 359 51 0 chr12 106778638 106778716 -37503773 + L2 LINE L2 3115 3196 -76 345 75 0 0 chr12 106778739 106778792 -37503697 + (TG)n Simple_repeat Simple_repeat 1 53 0 485 254 176 51 chr12 106778831 106779049 -37503440 - L1ME4a LINE L1 -120 6001 5811 931 157 13 64 chr12 106779049 106779284 -37503205 - L1MA4 LINE L1 0 6300 6078 485 254 176 51 chr12 106779284 106779475 -37503014 - L1ME4a LINE L1 -310 5811 5541 1313 87 0 0 chr12 106780450 106780622 -37501867 + AluY SINE Alu 131 302 -9 2571 114 3 0 chr12 106782050 106782410 -37500079 + THE1B LTR MaLR 4 364 0 10540 99 15 58 chr12 106782410 106784056 -37498433 + THE1B-int LTR MaLR 1 1575 -5 2426 113 32 0 chr12 106784072 106784417 -37498072 + THE1B LTR MaLR 1 356 -8 1633 190 10 0 chr12 106784429 106784718 -37497771 - AluJb SINE Alu -20 292 1 2670 230 61 34 chr12 106786188 106787108 -37495381 - L1ME1 LINE L1 0 6235 5342 2840 16 0 3 chr12 106787108 106787427 -37495062 - AluYb8 SINE Alu 0 318 1 2670 230 61 34 chr12 106787427 106788139 -37494350 - L1ME1 LINE L1 -893 5342 4553 2357 153 30 9 chr12 106788139 106788577 -37493912 - L1MA4 LINE L1 -2 6298 5852 2670 230 61 34 chr12 106788577 106788600 -37493889 - L1ME1 LINE L1 -1682 4553 4532 30 27 0 0 chr12 106788636 106788673 -37493816 + AT_rich Low_complexity Low_complexity 1 37 0 9222 197 23 7 chr12 106788673 106791699 -37490790 - L1PA16 LINE L1 0 6166 3092 387 0 0 0 chr12 106791699 106791742 -37490747 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 461 236 202 17 chr12 106791753 106791986 -37490503 + L1ME4a LINE L1 5832 6107 -14 * 5146 228 22 22 chr12 106791968 106792084 -37490405 - L1PA16 LINE L1 -3041 3105 2990 1160 171 0 0 chr12 106792084 106792283 -37490206 + L1PA16 LINE L1 5968 6166 0 5146 228 22 22 chr12 106792283 106793257 -37489232 - L1PA16 LINE L1 -3156 2990 2012 2295 106 42 25 chr12 106793257 106793615 -37488874 + THE1B LTR MaLR 1 364 0 5146 228 22 22 chr12 106793615 106793915 -37488574 - L1PA16 LINE L1 -4133 2013 1714 2297 260 42 3 chr12 106793941 106794592 -37487897 - L1ME1 LINE L1 -1830 4385 3710 225 188 29 43 chr12 106794588 106794657 -37487832 - L1ME1 LINE L1 -5718 678 611 * 556 343 34 10 chr12 106794702 106794906 -37487583 - LTR16A LTR ERVL -2 448 240 622 320 81 29 chr12 106795083 106795427 -37487062 - L2 LINE L2 -1665 1649 1288 317 316 137 0 chr12 106795427 106795522 -37486967 - L2 LINE L2 -2127 1187 1080 400 290 7 7 chr12 106795712 106795867 -37486622 + L1M4 LINE L1 3763 3917 -2229 195 216 0 0 chr12 106796024 106796061 -37486428 + MIR SINE MIR 120 156 -106 25 31 0 0 chr12 106796254 106796286 -37486203 + AT_rich Low_complexity Low_complexity 1 32 0 30 77 0 0 chr12 106796703 106796768 -37485721 + AT_rich Low_complexity Low_complexity 1 65 0 390 192 246 15 chr12 106796848 106796978 -37485511 - MIR3 SINE MIR -9 199 40 21 0 0 0 chr12 106797647 106797668 -37484821 + AT_rich Low_complexity Low_complexity 1 21 0 407 175 113 81 chr12 106798258 106798374 -37484115 - L1MC5 LINE L1 -30 7931 7807 2455 68 3 0 chr12 106798374 106798669 -37483820 - AluY SINE Alu -15 296 1 407 175 113 81 chr12 106798669 106798712 -37483777 - L1MC5 LINE L1 -154 7807 7767 21 0 0 0 chr12 106798723 106798744 -37483745 + AT_rich Low_complexity Low_complexity 1 21 0 1107 264 137 18 chr12 106799074 106799461 -37483028 - LTR16A LTR ERVL 0 450 18 608 200 194 13 chr12 106799536 106799717 -37482772 - MIR SINE MIR -16 246 30 202 303 92 37 chr12 106800122 106800231 -37482258 + MIR SINE MIR 25 139 -69 1857 214 88 8 chr12 106800525 106800993 -37481496 + MLT1D LTR MaLR 1 505 0 1002 225 48 30 chr12 106801654 106802060 -37480429 + MLT1E1 LTR MaLR 151 614 -40 1223 250 47 24 chr12 106802089 106802173 -37480316 + MLT1E1-int LTR MaLR 38 119 -1252 1134 215 132 41 chr12 106802173 106802536 -37479953 - MSTD LTR MaLR 0 396 1 1223 250 47 24 chr12 106802536 106802933 -37479556 + MLT1E1-int LTR MaLR 119 643 -728 599 281 10 31 chr12 106803120 106803316 -37479173 + MLT1E1-int LTR MaLR 696 887 -484 670 210 141 125 chr12 106803396 106803787 -37478702 + MLT1E1-int LTR MaLR 877 1273 -98 197 324 40 27 chr12 106803787 106803861 -37478628 + L2 LINE L2 3185 3259 -13 32 51 0 38 chr12 106804570 106804649 -37477840 + AT_rich Low_complexity Low_complexity 1 76 0 350 292 15 23 chr12 106804714 106804844 -37477645 - L1ME LINE L1 -370 5800 5672 246 285 85 60 chr12 106804847 106805047 -37477442 + L1MC/D LINE L1 5613 5817 -1991 11128 137 20 18 chr12 106805223 106806165 -37476324 + Tigger1 DNA MER2_type 1 949 -1469 2458 132 3 21 chr12 106806165 106806545 -37475944 + THE1C LTR MaLR 1 373 -2 11128 137 20 18 chr12 106806545 106807467 -37475022 + Tigger1 DNA MER2_type 949 1868 -550 3347 130 18 30 chr12 106807663 106807889 -37474600 + Tigger1 DNA MER2_type 1863 2090 -328 2054 138 0 0 chr12 106807889 106808200 -37474289 + AluY SINE Alu 1 311 0 3347 130 18 30 chr12 106808200 106808536 -37473953 + Tigger1 DNA MER2_type 2090 2418 0 416 291 56 34 chr12 106809309 106809488 -37473001 + MIR SINE MIR 74 256 -6 4983 231 47 33 chr12 106809802 106811976 -37470513 + L1PA13 LINE L1 1 2411 -4386 7577 221 10 7 chr12 106811981 106813731 -37468758 + L1PA13 LINE L1 3188 4941 -1856 3764 140 67 0 chr12 106813731 106814344 -37468145 + L1PA15 LINE L1 5511 6164 -1 1049 325 68 24 chr12 106814886 106815344 -37467145 - MLT1K LTR MaLR -109 479 2 996 201 26 0 chr12 106815354 106815543 -37466946 + MER58A DNA MER1_type 7 200 -24 2065 130 14 35 chr12 106816012 106816358 -37466131 - MER2 DNA MER2_type -1 344 6 554 287 22 0 chr12 106816514 106816650 -37465839 - L2 LINE L2 0 3272 3134 619 355 58 59 chr12 106816674 106817338 -37465151 - L2 LINE L2 -2 3270 2551 450 94 0 0 chr12 106817455 106817519 -37464970 + (TCCCC)n Simple_repeat Simple_repeat 2 65 0 204 314 17 114 chr12 106818312 106818393 -37464096 - MER5A DNA MER1_type -4 185 128 2141 120 0 0 chr12 106818393 106818684 -37463805 - AluSx SINE Alu -15 297 7 204 314 17 114 chr12 106818684 106818777 -37463712 - MER5A DNA MER1_type -61 128 28 197 331 161 0 chr12 106818755 106818879 -37463610 - L3 LINE CR1 -830 747 604 * 654 199 99 12 chr12 106818916 106819087 -37463402 - LTR46 LTR ERV1 0 460 275 490 181 85 0 chr12 106819175 106819269 -37463220 - LTR46 LTR ERV1 -358 102 1 202 250 18 0 chr12 106819486 106819542 -37462947 + GA-rich Low_complexity Low_complexity 4 60 0 341 379 114 22 chr12 106819549 106819866 -37462623 - L3 LINE CR1 -1199 378 33 241 203 102 17 chr12 106820126 106820185 -37462304 + L2 LINE L2 3203 3266 -6 23 0 0 0 chr12 106820474 106820497 -37461992 + AT_rich Low_complexity Low_complexity 1 23 0 249 171 243 0 chr12 106820607 106820677 -37461812 - L2 LINE L2 -1 3312 3226 352 371 26 13 chr12 106821420 106821571 -37460918 - MER91A DNA MER1_type 0 196 44 324 299 80 43 chr12 106821736 106821923 -37460566 - MIR SINE MIR -48 214 21 313 123 31 0 chr12 106823233 106823298 -37459191 + (TA)n Simple_repeat Simple_repeat 1 67 0 216 377 24 12 chr12 106824062 106824229 -37458260 + L3b LINE CR1 1125 1293 -290 266 228 38 51 chr12 106824256 106824335 -37458154 + MER5B DNA MER1_type 101 178 0 214 307 93 47 chr12 106824521 106824671 -37457818 - MIR SINE MIR -74 188 32 21 36 0 0 chr12 106824893 106824921 -37457568 + AT_rich Low_complexity Low_complexity 1 28 0 349 320 0 14 chr12 106825194 106825214 -37457275 - L1MD2 LINE L1 -384 5975 5956 10220 203 64 49 chr12 106825214 106827165 -37455324 - L1MB7 LINE L1 -228 6454 4533 2089 112 25 0 chr12 106827165 106827451 -37455038 - AluSx SINE Alu -19 293 1 10220 203 64 49 chr12 106827451 106829157 -37453332 - L1MB7 LINE L1 -2149 4533 2745 652 170 15 44 chr12 106829157 106829292 -37453197 + FLAM_C SINE Alu 1 131 -2 10220 203 64 49 chr12 106829292 106829910 -37452579 - L1MB7 LINE L1 -3937 2745 2138 8189 145 21 6 chr12 106829923 106832409 -37450080 + L1MA1 LINE L1 3781 6301 -1 1524 106 18 9 chr12 106832632 106832858 -37449631 - L1MC1 LINE L1 -16 6317 6090 1368 243 76 13 chr12 106832887 106833282 -37449207 - L1MB7 LINE L1 -6104 438 19 2481 77 0 0 chr12 106834021 106834331 -37448158 + AluY SINE Alu 1 310 -1 219 212 0 30 chr12 106835110 106835176 -37447313 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 6322 169 14 27 chr12 106835325 106836372 -37446117 + L1PB3 LINE L1 3981 4987 -1167 2313 69 3 0 chr12 106836372 106836663 -37445826 + AluY SINE Alu 3 294 -17 6322 169 14 27 chr12 106836663 106837674 -37444815 + L1PB3 LINE L1 4987 6009 -145 391 86 0 0 chr12 106837678 106837736 -37444753 + L1PB3 LINE L1 6095 6152 -2 21 0 0 0 chr12 106838381 106838402 -37444087 + AT_rich Low_complexity Low_complexity 1 21 0 525 246 9 0 chr12 106838908 106839018 -37443471 + MER58B DNA MER1_type 199 309 -32 184 306 30 52 chr12 106839218 106839352 -37443137 - L2 LINE L2 -681 2633 2503 2003 145 3 0 chr12 106839356 106839659 -37442830 - AluSx SINE Alu -8 304 1 3606 157 3 65 chr12 106840387 106841211 -37441278 - L1P LINE L1 -801 5367 4597 440 265 154 6 chr12 106841240 106841402 -37441087 - MIR SINE MIR -64 198 13 340 275 50 50 chr12 106841411 106841593 -37440896 + MER5A DNA MER1_type 7 188 -1 2227 165 95 12 chr12 106841829 106842260 -37440229 - MLT1C LTR MaLR 0 467 1 348 263 132 21 chr12 106842850 106843097 -37439392 - L1MC/D LINE L1 -596 5525 5255 1936 199 68 33 chr12 106843863 106844081 -37438408 - MLT1D LTR MaLR 0 505 296 2073 112 44 52 chr12 106844081 106844448 -37438041 + THE1B LTR MaLR 1 364 0 1936 199 68 33 chr12 106844448 106844716 -37437773 - MLT1D LTR MaLR -209 296 2 557 296 143 34 chr12 106845120 106845179 -37437310 - L3 LINE CR1 -32 1545 1494 2409 82 3 0 chr12 106845179 106845482 -37437007 + AluY SINE Alu 1 304 -7 557 296 143 34 chr12 106845482 106845862 -37436627 - L3 LINE CR1 -83 1494 1058 352 365 68 15 chr12 106846203 106846469 -37436020 - L3 LINE CR1 -520 1057 778 14758 161 38 14 chr12 106846910 106847938 -37434551 + L1MA2 LINE L1 1383 2385 -5338 2182 119 7 7 chr12 106847938 106848248 -37434241 + AluSp SINE Alu 3 312 -1 14758 161 38 14 chr12 106848248 106851379 -37431110 + L1MA2 LINE L1 2385 5440 -2283 1485 108 0 51 chr12 106851379 106851593 -37430896 - AluSq SINE Alu -109 204 2 14758 161 38 14 chr12 106851593 106852266 -37430223 + L1MA2 LINE L1 5440 6096 -1627 2425 119 13 8 chr12 106852266 106852643 -37429846 - L1PA10 LINE L1 0 6168 5790 14758 161 38 14 chr12 106852643 106853996 -37428493 + L1MA2 LINE L1 6096 7719 -4 21 36 0 0 chr12 106853998 106854026 -37428463 + AT_rich Low_complexity Low_complexity 1 28 0 402 317 88 26 chr12 106854365 106854592 -37427897 + MIR SINE MIR 22 262 0 206 277 15 15 chr12 106854797 106854862 -37427627 - L2 LINE L2 0 3313 3249 263 340 48 27 chr12 106855032 106855179 -37427310 - L3 LINE CR1 -1104 473 324 * 562 340 75 24 chr12 106855144 106855479 -37427010 - L2 LINE L2 -595 2719 2368 2018 148 21 0 chr12 106855633 106855964 -37426525 - Tigger1 DNA MER2_type 0 2418 2081 6019 92 15 2 chr12 106855965 106857747 -37424742 - L1PA11 LINE L1 0 6174 4361 2631 124 5 0 chr12 106857766 106858168 -37424321 + L1P LINE L1 3909 4312 -1834 12929 117 35 9 chr12 106858168 106860174 -37422315 - Tigger1 DNA MER2_type -330 2088 32 30 45 0 0 chr12 106860492 106860536 -37421953 + AT_rich Low_complexity Low_complexity 1 44 0 288 328 143 12 chr12 106860741 106860985 -37421504 + L1ME4a LINE L1 5676 5951 -211 248 285 89 25 chr12 106861474 106861632 -37420857 + L1ME4a LINE L1 5936 6103 -18 393 212 51 68 chr12 106861984 106862102 -37420387 - L2 LINE L2 -1 3312 3197 581 257 55 108 chr12 106862267 106862574 -37419915 - L3 LINE CR1 -185 1392 1102 2351 164 16 13 chr12 106862839 106863218 -37419271 + MER47B DNA MER2_type 1 380 -38 263 313 50 12 chr12 106863290 106863370 -37419119 + L2 LINE L2 3140 3222 -50 259 64 21 21 chr12 106863371 106863418 -37419071 + (TA)n Simple_repeat Simple_repeat 2 48 0 197 161 0 0 chr12 106863427 106863458 -37419031 + L2 LINE L2 3273 3303 -10 756 293 77 40 chr12 106863647 106864026 -37418463 - MLT1L LTR MaLR -18 597 205 1581 175 46 0 chr12 106865818 106866081 -37416408 + AluJb SINE Alu 16 290 -22 942 260 78 0 chr12 106866237 106866479 -37416010 - MIR SINE MIR 0 262 2 198 329 12 37 chr12 106866935 106867017 -37415472 - L2 LINE L2 -14 3258 3179 767 296 41 71 chr12 106867610 106868226 -37414263 + L1MEd LINE L1 586 1182 -4937 544 271 91 13 chr12 106868402 106868752 -37413737 - MLT1G1 LTR MaLR 0 595 198 365 231 44 0 chr12 106868758 106868849 -37413640 - MLT1B LTR MaLR -78 312 218 326 284 0 11 chr12 106869074 106869169 -37413320 - MLT1G1-int LTR MaLR -1277 94 1 793 226 80 2 chr12 106869171 106869371 -37413118 - MLT1G1 LTR MaLR -2 593 302 365 250 141 55 chr12 106869467 106869595 -37412894 - MLT1G1 LTR MaLR -456 139 1 409 336 91 50 chr12 106870309 106870927 -37411562 - L2 LINE L2 -4 3268 2564 210 71 0 0 chr12 106871178 106871206 -37411283 + (GA)n Simple_repeat Simple_repeat 1 28 0 1383 184 20 134 chr12 106871235 106871640 -37410849 + MLT1B LTR MaLR 1 354 -36 1769 148 31 70 chr12 106871640 106871997 -37410492 - MER2 DNA MER2_type -1 343 1 1383 184 20 134 chr12 106871997 106872031 -37410458 + MLT1B LTR MaLR 354 390 0 240 143 0 0 chr12 106872627 106872669 -37409820 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 342 0 0 0 chr12 106873647 106873685 -37408804 + (CA)n Simple_repeat Simple_repeat 2 39 0 1153 289 88 102 chr12 106873938 106874273 -37408216 + L2 LINE L2 1298 1636 -1678 2213 63 0 0 chr12 106874273 106874542 -37407947 - AluY SINE Alu -8 303 35 1153 289 88 102 chr12 106874542 106875576 -37406913 + L2 LINE L2 1636 2648 -666 7386 177 17 0 chr12 106875903 106877279 -37405210 - L1P LINE L1 -1926 4220 2821 711 83 0 0 chr12 106877279 106877375 -37405114 + L1PA14 LINE L1 5852 5947 -214 1273 161 42 0 chr12 106877400 106877636 -37404853 + L1PA13 LINE L1 5913 6158 -5 2106 92 42 0 chr12 106877703 106877986 -37404503 - AluYa5 SINE Alu -16 295 1 210 255 0 0 chr12 106878787 106878838 -37403651 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 1992 116 4 0 chr12 106879760 106880035 -37402454 - AluSg SINE Alu -10 300 25 21 57 0 0 chr12 106880050 106880085 -37402404 + AT_rich Low_complexity Low_complexity 1 35 0 404 248 78 89 chr12 106880762 106881316 -37401173 + L1M4 LINE L1 2219 2766 -3380 671 168 60 12 chr12 106881607 106881774 -37400715 + Charlie5 DNA MER1_type 604 778 -1834 13675 194 32 25 chr12 106881774 106882524 -37399965 + L1PB3 LINE L1 7 750 -5461 378 0 0 0 chr12 106882524 106882566 -37399923 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 13675 194 32 25 chr12 106882566 106887981 -37394508 + L1PB3 LINE L1 750 6202 -9 2473 207 46 22 chr12 106887995 106888687 -37393802 + Charlie5 DNA MER1_type 760 1468 -1144 2931 160 79 104 chr12 106888692 106888986 -37393503 + Charlie5 DNA MER1_type 1735 2035 -589 3184 122 11 41 chr12 106888986 106889545 -37392944 - L1MA7 LINE L1 -4 6287 5746 2931 160 79 104 chr12 106889545 106890162 -37392327 + Charlie5 DNA MER1_type 2035 2623 -1 2128 241 69 1 chr12 106890165 106890854 -37391635 - MER69 DNA AcHobo -321 2205 27 544 198 72 0 chr12 106891179 106891290 -37391199 - MER94 DNA DNA 0 134 16 892 229 89 5 chr12 106891337 106891551 -37390938 - MIR SINE MIR 0 262 31 430 223 11 0 chr12 106891551 106891645 -37390844 + MER81 DNA DNA 1 95 -19 258 194 47 17 chr12 106891684 106891760 -37390729 - L1M4 LINE L1 -584 5582 5509 1659 271 92 18 chr12 106891772 106892315 -37390174 + MLT1E LTR MaLR 11 593 0 307 353 12 35 chr12 106892319 106892492 -37389997 - L1M4 LINE L1 -678 5486 5318 264 334 59 3 chr12 106892506 106892608 -37389881 - L1M4 LINE L1 -871 5275 5180 2029 137 7 7 chr12 106892608 106892914 -37389575 - AluSx SINE Alu -6 306 1 264 334 59 3 chr12 106892914 106893134 -37389355 - L1M4 LINE L1 -966 5180 4935 21 36 0 0 chr12 106893520 106893548 -37388941 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr12 106893706 106893742 -37388747 + AT_rich Low_complexity Low_complexity 1 36 0 2057 128 0 26 chr12 106893757 106894070 -37388419 - AluSx SINE Alu -7 305 1 282 329 43 14 chr12 106894084 106894294 -37388195 - L1P LINE L1 -1902 4244 4029 312 264 132 78 chr12 106894341 106894599 -37387890 - L1M4 LINE L1 -3755 2391 2120 355 337 64 14 chr12 106894718 106895062 -37387427 + L1ME LINE L1 3545 3905 -2241 536 295 138 26 chr12 106895247 106895711 -37386778 + L1ME LINE L1 5289 5804 -360 271 236 121 43 chr12 106896043 106896183 -37386306 - L1ME4a LINE L1 -14 6107 5957 224 255 157 20 chr12 106896556 106896658 -37385831 - L2 LINE L2 -18 3295 3180 240 35 0 0 chr12 106897346 106897375 -37385114 + (TG)n Simple_repeat Simple_repeat 1 29 0 1372 202 22 4 chr12 106898883 106899187 -37383302 - AluJo SINE Alu 0 309 1 44133 37 1 1 chr12 106899574 106905716 -37376773 - L1PA3 LINE L1 -3 6152 9 2037 187 60 0 chr12 106905948 106906350 -37376139 - MSTB LTR MaLR 0 426 1 1438 304 34 2 chr12 106906474 106906889 -37375600 - LTR16A LTR ERVL -5 445 18 341 373 99 26 chr12 106906905 106907548 -37374941 - L2 LINE L2 -2188 1126 437 14075 151 65 12 chr12 106907588 106907951 -37374538 - L1PB1 LINE L1 0 6867 6524 231 114 0 0 chr12 106907951 106907986 -37374503 + (TA)n Simple_repeat Simple_repeat 2 36 0 14075 151 65 12 chr12 106907986 106913543 -37368946 - L1PB1 LINE L1 -343 6524 636 1136 120 11 0 chr12 106913541 106913724 -37368765 - L1PB1 LINE L1 -6678 185 1 * 356 347 96 24 chr12 106914858 106915109 -37367380 + L2 LINE L2 2824 3092 -180 1537 232 96 75 chr12 106915303 106915707 -37366782 - MLT1F1 LTR MaLR 0 567 123 2455 77 0 0 chr12 106915707 106916017 -37366472 - AluY SINE Alu -1 310 1 1537 232 96 75 chr12 106916017 106916143 -37366346 - MLT1F1 LTR MaLR -444 123 1 221 347 42 0 chr12 106916503 106916575 -37365914 - L2 LINE L2 0 3272 3198 963 258 9 13 chr12 106916747 106916972 -37365517 + MER58A DNA MER1_type 1 224 0 344 238 167 16 chr12 106917152 106917204 -37365285 - MIR SINE MIR 0 262 219 240 86 0 0 chr12 106917204 106917239 -37365250 + (CA)n Simple_repeat Simple_repeat 1 35 0 344 238 167 16 chr12 106917239 106917312 -37365177 - MIR SINE MIR -43 219 118 393 366 30 17 chr12 106917379 106917611 -37364878 + L2 LINE L2 2836 3070 -202 1677 243 44 40 chr12 106918599 106919076 -37363413 + MLT2B1 LTR ERVL 1 482 -38 564 15 0 0 chr12 106919076 106919141 -37363348 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 1677 243 44 40 chr12 106919141 106919181 -37363308 + MLT2B1 LTR ERVL 482 520 0 245 313 63 35 chr12 106919489 106919615 -37362874 - MIR SINE MIR -67 141 44 416 237 125 63 chr12 106919743 106920174 -37362315 + L1MEd LINE L1 737 1194 -4925 625 208 32 0 chr12 106920175 106920300 -37362189 + L2 LINE L2 2381 2509 -805 5814 136 41 17 chr12 106920318 106921574 -37360915 - L1MA8 LINE L1 -4 6287 4989 665 221 8 0 chr12 106921574 106921696 -37360793 - FLAM_A SINE Alu -10 123 1 5814 136 41 17 chr12 106921696 106922024 -37360465 - L1MA8 LINE L1 -1302 4989 4670 354 234 57 57 chr12 106922500 106922641 -37359848 + MIR SINE MIR 122 262 0 1791 179 3 7 chr12 106923003 106923305 -37359184 + AluJb SINE Alu 1 301 -11 1539 189 60 9 chr12 106923353 106923686 -37358803 - L1MC1 LINE L1 -7 6326 5977 645 172 9 17 chr12 106926696 106926812 -37355677 + FLAM_A SINE Alu 1 115 -18 24 67 0 0 chr12 106927006 106927051 -37355438 + AT_rich Low_complexity Low_complexity 1 45 0 31 0 0 0 chr12 106927925 106927956 -37354533 + AT_rich Low_complexity Low_complexity 1 31 0 2982 226 67 33 chr12 106928744 106929894 -37352595 - L1ME2 LINE L1 -34 6130 4943 545 234 134 64 chr12 106929934 106930293 -37352196 - L1ME2 LINE L1 -1763 4383 4000 200 280 147 64 chr12 106930444 106930662 -37351827 - L2 LINE L2 -843 2471 2236 239 235 20 0 chr12 106930807 106930858 -37351631 - MIR SINE MIR -64 144 93 1286 237 13 22 chr12 106931639 106931955 -37350534 + MLT1A1 LTR MaLR 1 313 -52 21 0 0 0 chr12 106932588 106932609 -37349880 + AT_rich Low_complexity Low_complexity 1 21 0 265 182 104 0 chr12 106932641 106932718 -37349771 - MIR SINE MIR -61 201 117 331 219 55 14 chr12 106933127 106933200 -37349289 + MER5B DNA MER1_type 30 105 -73 189 300 67 0 chr12 106935001 106935061 -37347428 - L2 LINE L2 0 3272 3209 958 220 235 3 chr12 106935181 106935504 -37346985 + L2 LINE L2 2123 2520 -794 987 234 14 18 chr12 106935504 106935722 -37346767 + Charlie1 DNA MER1_type 1 217 -2544 458 244 55 0 chr12 106935726 106935853 -37346636 + Charlie1 DNA MER1_type 2624 2757 -4 874 335 107 6 chr12 106935853 106936524 -37345965 + L2 LINE L2 2509 3249 -64 214 150 50 0 chr12 106936524 106936564 -37345925 + CT-rich Low_complexity Low_complexity 3 44 0 1979 186 26 53 chr12 106936733 106937202 -37345287 - MSTB2 LTR MaLR -1 456 1 330 169 155 0 chr12 106937401 106937472 -37345017 + MER103 DNA DNA 3 84 -82 188 309 0 44 chr12 106937720 106937788 -37344701 - MIR SINE MIR -74 188 124 22 35 0 0 chr12 106938860 106938889 -37343600 + AT_rich Low_complexity Low_complexity 1 29 0 2228 238 50 45 chr12 106938959 106939025 -37343464 - L1MC4 LINE L1 -140 7902 7838 2553 58 0 3 chr12 106939025 106939335 -37343154 - AluY SINE Alu -2 309 1 2228 238 50 45 chr12 106939335 106939843 -37342646 - L1MC4 LINE L1 -204 7838 7334 258 32 0 0 chr12 106939843 106939874 -37342615 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2228 238 50 45 chr12 106939874 106940577 -37341912 - L1MC4 LINE L1 -708 7334 6469 1059 293 86 29 chr12 106941260 106941790 -37340699 - L2 LINE L2 0 3313 2750 1248 300 88 22 chr12 106941906 106942648 -37339841 - L2 LINE L2 -132 3181 2380 345 288 106 57 chr12 106943562 106943946 -37338543 + L1MC/D LINE L1 5099 5502 -664 26 0 0 0 chr12 106944199 106944225 -37338264 + AT_rich Low_complexity Low_complexity 1 26 0 3001 89 23 12 chr12 106944371 106944799 -37337690 - MER57B LTR ERV1 0 434 2 287 104 21 0 chr12 106944800 106944848 -37337641 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 321 26 0 0 chr12 106944868 106944906 -37337583 + (TG)n Simple_repeat Simple_repeat 2 39 0 4289 117 6 14 chr12 106945544 106946202 -37336287 - L1PA13 LINE L1 -23 6140 5488 1479 212 19 76 chr12 107046218 107046557 -37235932 - MSTD LTR MaLR 0 396 84 1652 178 7 20 chr12 107046557 107046860 -37235629 - AluJo SINE Alu -11 301 3 1479 212 19 76 chr12 107046860 107046940 -37235549 - MSTD LTR MaLR -312 84 1 22 35 0 0 chr12 107048408 107048437 -37234052 + AT_rich Low_complexity Low_complexity 1 29 0 710 344 130 25 chr12 107049047 107049701 -37232788 + L3 LINE CR1 320 1042 -535 289 290 31 25 chr12 107049762 107049924 -37232565 - L1ME4a LINE L1 -75 6046 5884 820 314 101 44 chr12 107049954 107050458 -37232031 + L3 LINE CR1 1044 1576 -1 360 219 34 84 chr12 107050574 107050693 -37231796 - MIR SINE MIR -44 218 106 485 271 142 0 chr12 107051053 107051208 -37231281 + MIR SINE MIR 53 229 -33 21 0 0 0 chr12 107051744 107051765 -37230724 + AT_rich Low_complexity Low_complexity 1 21 0 417 298 167 45 chr12 107053928 107054417 -37228072 - L1M2 LINE L1 -5734 1115 564 529 274 36 6 chr12 107055119 107055287 -37227202 - MIR SINE MIR -81 181 9 584 246 150 21 chr12 107055338 107055525 -37226964 - MIR SINE MIR -12 250 40 231 348 43 0 chr12 107056423 107056515 -37225974 + MIR3 SINE MIR 111 206 -2 2196 118 0 0 chr12 107056615 107056903 -37225586 - AluSx SINE Alu -24 288 1 320 299 47 16 chr12 107057164 107057291 -37225198 - L3 LINE CR1 -1200 377 247 305 265 12 12 chr12 107058346 107058429 -37224060 + LTR16C LTR ERVL 408 490 -1 2167 122 3 0 chr12 107059200 107059495 -37222994 + AluSq SINE Alu 6 301 -12 406 320 33 50 chr12 107059777 107059958 -37222531 + HERVL LTR ERVL 1390 1567 -3429 1951 162 64 0 chr12 107059959 107060304 -37222185 - MLT1C LTR MaLR 0 467 101 1243 321 65 27 chr12 107060395 107060950 -37221539 + HERVL LTR ERVL 1738 2313 -2683 469 267 33 0 chr12 107061064 107061184 -37221305 + MER5C DNA MER1_type 1 124 -200 963 340 22 12 chr12 107061336 107061899 -37220590 + HERVL LTR ERVL 3793 4435 -1329 1724 167 29 53 chr12 107062066 107062408 -37220081 + MER1B DNA MER1_type 4 337 0 632 240 65 0 chr12 107062719 107062873 -37219616 - MIR SINE MIR -98 164 1 26 30 0 0 chr12 107063004 107063037 -37219452 + AT_rich Low_complexity Low_complexity 1 33 0 479 258 114 3 chr12 107063428 107063560 -37218929 + MIR SINE MIR 6 149 -59 1405 168 28 28 chr12 107063939 107064261 -37218228 + MER33 DNA MER1_type 2 323 -1 2268 150 34 92 chr12 107064710 107065262 -37217227 - MLT2B1 LTR ERVL 0 520 1 2054 102 52 68 chr12 107065346 107065727 -37216762 + THE1C LTR MaLR 1 375 0 26 64 0 0 chr12 107066082 107066129 -37216360 + AT_rich Low_complexity Low_complexity 1 47 0 1101 239 37 0 chr12 107066208 107066451 -37216038 + MIR SINE MIR 11 262 0 220 326 126 0 chr12 107066778 107066873 -37215616 - L2 LINE L2 -8 3264 3158 1832 170 122 6 chr12 107066915 107067268 -37215221 + MSTD LTR MaLR 3 396 0 239 395 0 0 chr12 107067281 107067395 -37215094 - L2 LINE L2 -290 2982 2869 294 350 36 43 chr12 107067489 107067629 -37214860 - L2 LINE L2 -233 3039 2901 259 204 0 20 chr12 107068105 107068154 -37214335 - MER96B DNA MER1_type? 0 417 370 622 206 67 6 chr12 107068174 107068339 -37214150 - MER96B DNA MER1_type? -242 175 1 256 206 59 59 chr12 107068339 107068407 -37214082 + L2 LINE L2 3204 3271 -1 1582 183 105 9 chr12 107068764 107069097 -37213392 + MLT1A1 LTR MaLR 1 365 0 491 240 97 34 chr12 107069131 107069306 -37213183 + L2 LINE L2 3083 3268 -45 401 254 148 0 chr12 107069420 107069542 -37212947 + L1MEd LINE L1 116 255 -5864 614 250 44 33 chr12 107069616 107069796 -37212693 + L1MEd LINE L1 394 575 -5544 457 235 15 15 chr12 107069796 107069932 -37212557 + LTR41 LTR ERVL 1 136 -637 23 33 0 0 chr12 107069988 107070018 -37212471 + AT_rich Low_complexity Low_complexity 1 30 0 1434 200 163 45 chr12 107070520 107070985 -37211504 + MLT2B1 LTR ERVL 1 520 0 360 262 56 95 chr12 107071316 107071568 -37210921 + MLT1K LTR MaLR 333 574 -14 878 198 0 18 chr12 107071887 107072054 -37210435 + FRAM SINE Alu 2 165 -1 32 0 0 0 chr12 107072085 107072117 -37210372 + AT_rich Low_complexity Low_complexity 1 32 0 2661 7 0 0 chr12 107072504 107072828 -37209661 - AluYb8 SINE Alu 0 324 1 11258 28 0 0 chr12 107073511 107074849 -37207640 - L1PA4 LINE L1 -755 5391 4054 6353 33 3 1 chr12 107074849 107075603 -37206886 + L1PA4 LINE L1 5390 6152 -3 253 105 0 0 chr12 107075821 107075859 -37206630 - L1P5 LINE L1 -437 5714 5677 226 204 0 0 chr12 107075855 107075904 -37206585 + L1PB1 LINE L1 6095 6143 -8 * 364 342 7 7 chr12 107077257 107077406 -37205083 + GA-rich Low_complexity Low_complexity 1 149 0 180 246 16 66 chr12 107077774 107077835 -37204654 + L3b LINE CR1 1306 1363 -220 397 292 88 0 chr12 107078287 107078424 -37204065 + MIR3 SINE MIR 4 152 -56 349 286 71 21 chr12 107078581 107078721 -37203768 - MIR3 SINE MIR -10 198 52 5465 165 20 22 chr12 107079760 107080772 -37201717 - L1PA16 LINE L1 -9 6157 5145 186 43 0 0 chr12 107080772 107080795 -37201694 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1845 148 0 0 chr12 107080803 107081067 -37201422 - AluSx SINE Alu -48 264 1 5465 165 20 22 chr12 107081067 107081637 -37200852 - L1PA16 LINE L1 -1028 5138 4572 2067 108 28 0 chr12 107081689 107081976 -37200513 + AluSg SINE Alu 1 295 -15 362 346 107 19 chr12 107083624 107083783 -37198706 - L2 LINE L2 -1 3271 3099 266 339 69 49 chr12 107083833 107084078 -37198411 - L2 LINE L2 -700 2614 2365 789 158 12 36 chr12 107084155 107084291 -37198198 + L1 LINE L1 4577 4710 -1436 1757 175 0 38 chr12 107084291 107084611 -37197878 + AluJb SINE Alu 2 309 -3 789 158 12 36 chr12 107084611 107084639 -37197850 + L1 LINE L1 4710 4737 -1409 1442 224 68 36 chr12 107084646 107085150 -37197339 + L1MA9 LINE L1 5780 6299 -13 1096 187 26 90 chr12 107085136 107085604 -37196885 + L1ME1 LINE L1 5426 5835 -331 * 256 213 0 0 chr12 107085729 107085776 -37196713 + MER63 DNA MER1_type 681 727 -109 911 225 121 61 chr12 107085829 107086187 -37196302 + HAL1 LINE L1 732 1138 -1369 1788 146 82 0 chr12 107086187 107086467 -37196022 + AluSg SINE Alu 1 303 -7 911 225 121 61 chr12 107086467 107086678 -37195811 + HAL1 LINE L1 1138 1335 -1172 2039 118 0 50 chr12 107086690 107086830 -37195659 + AluSx SINE Alu 1 146 -166 2402 69 7 3 chr12 107086830 107087134 -37195355 + AluY SINE Alu 1 305 -6 2039 118 0 50 chr12 107087134 107087316 -37195173 + AluSx SINE Alu 146 307 -5 23 0 0 0 chr12 107087333 107087356 -37195133 + AT_rich Low_complexity Low_complexity 1 23 0 343 272 140 70 chr12 107087817 107088218 -37194271 + L1ME LINE L1 4560 4988 -1158 1086 273 224 0 chr12 107088219 107088630 -37193859 + L2 LINE L2 2804 3306 -7 747 262 65 32 chr12 107088630 107088972 -37193517 + L1ME LINE L1 5355 5707 -414 753 257 73 60 chr12 107089324 107089760 -37192729 + L1MC/D LINE L1 5288 5729 -392 949 87 0 8 chr12 107089777 107089903 -37192586 + AluSq/x SINE Alu 11 135 -177 1909 157 0 0 chr12 107089903 107090196 -37192293 + AluSx SINE Alu 1 293 -19 24 0 0 0 chr12 107090233 107090257 -37192232 + AT_rich Low_complexity Low_complexity 1 24 0 236 339 24 0 chr12 107090294 107090421 -37192068 + L1MC/D LINE L1 5772 5901 -1907 387 248 59 10 chr12 107090422 107090523 -37191966 - MIR SINE MIR -32 230 125 321 258 0 0 chr12 107091032 107091094 -37191395 - L2 LINE L2 -2905 409 348 1894 129 6 60 chr12 107092595 107092912 -37189577 + AluJb SINE Alu 3 302 -10 1447 129 97 0 chr12 107092913 107093192 -37189297 - MER33 DNA MER1_type -18 306 1 1006 110 0 37 chr12 107093260 107093424 -37189065 + L1PA11 LINE L1 6017 6174 0 419 266 0 0 chr12 107093590 107093669 -37188820 + MER58A DNA MER1_type 1 79 -28 1836 213 75 21 chr12 107094374 107094853 -37187636 + MLT1D LTR MaLR 1 505 0 814 290 37 16 chr12 107094952 107095197 -37187292 - MIR SINE MIR -10 252 3 461 298 121 63 chr12 107095201 107095245 -37187244 - L1ME LINE L1 -682 5508 5468 3580 137 41 8 chr12 107095245 107095859 -37186630 - L1PB4 LINE L1 -2 6154 5521 461 298 121 63 chr12 107095859 107096559 -37185930 - L1ME LINE L1 -722 5468 4702 721 214 0 0 chr12 107096559 107096685 -37185804 + FLAM_A SINE Alu 2 127 -6 461 298 121 63 chr12 107096685 107096796 -37185693 - L1ME LINE L1 -1488 4702 4599 404 328 65 20 chr12 107096797 107096998 -37185491 + MIR SINE MIR 48 257 -5 24 0 0 0 chr12 107097035 107097059 -37185430 + AT_rich Low_complexity Low_complexity 1 24 0 714 300 5 0 chr12 107097082 107097272 -37185217 - MIR SINE MIR -27 235 45 1674 248 216 36 chr12 107097409 107098201 -37184288 - L2 LINE L2 0 3313 2377 257 302 129 15 chr12 107098230 107098432 -37184057 - L1ME LINE L1 -1952 4263 4039 1006 237 55 0 chr12 107098456 107098675 -37183814 + MIR SINE MIR 6 236 -26 283 323 116 27 chr12 107098692 107099364 -37183125 - L1ME LINE L1 -2187 4028 3297 2559 122 84 7 chr12 107099839 107100281 -37182208 + MER31A LTR ERV1 1 476 -9 339 194 69 0 chr12 107100534 107100606 -37181883 - L1PA11 LINE L1 -5 6169 6093 11374 120 21 1 chr12 107100790 107103376 -37179113 - L1PA11 LINE L1 -87 6087 3455 317 322 104 48 chr12 107103431 107103766 -37178723 - L1ME LINE L1 -3876 2520 2167 553 167 108 0 chr12 107104460 107104562 -37177927 + MER39 LTR ERV1 1 113 -594 923 209 12 0 chr12 107104562 107104734 -37177755 - FRAM SINE Alu -3 173 1 3357 125 24 6 chr12 107104751 107105291 -37177198 + MER39 LTR ERV1 70 707 0 739 282 71 4 chr12 107105913 107106224 -37176265 + L1ME3A LINE L1 4702 5048 -1098 2408 129 42 10 chr12 107106261 107106664 -37175825 + L1PA16 LINE L1 5750 6165 -1 243 93 47 0 chr12 107106714 107106757 -37175732 + L1MC4 LINE L1 6658 6702 -1340 * 2211 233 149 6 chr12 107106752 107107448 -37175041 + L1ME3A LINE L1 5375 6170 0 342 0 0 0 chr12 107107745 107107783 -37174706 + (TC)n Simple_repeat Simple_repeat 1 38 0 25 51 0 0 chr12 107107833 107107872 -37174617 + AT_rich Low_complexity Low_complexity 1 39 0 314 227 71 71 chr12 107109400 107109554 -37172935 - L2 LINE L2 0 3313 3160 524 146 68 29 chr12 107109947 107110050 -37172439 - MER99 DNA DNA -5 823 717 14465 189 23 9 chr12 107110050 107111460 -37171029 + L1PB1 LINE L1 9 1397 -5470 2212 71 0 7 chr12 107111460 107111775 -37170714 - AluY SINE Alu 0 313 1 14465 189 23 9 chr12 107111775 107116451 -37166038 + L1PB1 LINE L1 1397 6823 -44 3429 216 18 19 chr12 107116472 107117099 -37165390 - MER99 DNA DNA -86 742 115 2380 96 0 3 chr12 107117099 107117411 -37165078 - AluSx SINE Alu -1 311 1 3429 216 18 19 chr12 107117411 107117525 -37164964 - MER99 DNA DNA -713 115 2 283 357 7 42 chr12 107117941 107118084 -37164405 - L2 LINE L2 -550 2764 2627 1087 259 107 27 chr12 107118348 107118750 -37163739 + MER57B LTR ERV1 1 434 0 2218 117 0 0 chr12 107120897 107121197 -37161292 + AluY SINE Alu 1 300 -11 2089 106 3 39 chr12 107121253 107121565 -37160924 + AluSc SINE Alu 1 301 -8 429 325 82 15 chr12 107122063 107122269 -37160220 + MIR SINE MIR 23 242 -20 366 229 25 25 chr12 107123561 107123679 -37158810 + LTR67 LTR ERVL 432 549 -8 997 268 85 37 chr12 107124797 107124834 -37157655 + L1ME3A LINE L1 3545 3579 -2567 1994 144 35 44 chr12 107124834 107125201 -37157288 - THE1B LTR MaLR 0 364 1 997 268 85 37 chr12 107125201 107125258 -37157231 + L1ME3A LINE L1 3579 3632 -2514 198 0 0 0 chr12 107125258 107125280 -37157209 + (TTG)n Simple_repeat Simple_repeat 2 23 0 997 268 85 37 chr12 107125280 107125621 -37156868 + L1ME3A LINE L1 3632 4002 -2144 501 310 82 0 chr12 107125635 107125819 -37156670 + L1ME3A LINE L1 5961 6159 -11 1645 248 164 18 chr12 107125821 107126239 -37156250 + L1ME3A LINE L1 4012 4368 -1778 2074 127 7 0 chr12 107126239 107126538 -37155951 + AluSq SINE Alu 1 301 -12 1645 248 164 18 chr12 107126538 107126855 -37155634 + L1ME3A LINE L1 4368 4637 -1509 2282 82 3 26 chr12 107126855 107127160 -37155329 + AluSp SINE Alu 1 298 -15 1645 248 164 18 chr12 107127160 107127367 -37155122 + L1ME3A LINE L1 4637 5093 -1053 5781 166 24 4 chr12 107127401 107129401 -37153088 - L1PA16 LINE L1 0 6166 4126 403 222 256 17 chr12 107129519 107129695 -37152794 + L1ME3A LINE L1 5429 5646 -516 619 233 27 0 chr12 107129735 107129885 -37152604 + L1ME3A LINE L1 6004 6157 -13 713 179 29 21 chr12 107130469 107130609 -37151880 + MIR SINE MIR 84 224 -38 355 331 67 47 chr12 107130639 107130998 -37151491 - HAL1 LINE L1 -1658 849 484 486 256 80 130 chr12 107130998 107131128 -37151361 - L3 LINE CR1 -313 1264 1129 1961 169 65 23 chr12 107131128 107131464 -37151025 + MLT2D LTR ERVL 1 358 -56 180 0 0 0 chr12 107131464 107131484 -37151005 + (TC)n Simple_repeat Simple_repeat 1 20 0 1961 169 65 23 chr12 107131484 107131544 -37150945 + MLT2D LTR ERVL 358 414 0 486 256 80 130 chr12 107131544 107131998 -37150491 - L3 LINE CR1 -448 1129 709 485 322 64 10 chr12 107132178 107132380 -37150109 + MIR SINE MIR 39 251 -11 449 290 22 77 chr12 107133209 107133392 -37149097 - L2 LINE L2 -4 3268 3096 194 250 103 0 chr12 107133432 107133500 -37148989 - L3 LINE CR1 -3 1574 1500 274 339 124 65 chr12 107133595 107133902 -37148587 - L2 LINE L2 0 3272 2948 2148 96 7 30 chr12 107133904 107134207 -37148282 + AluSx SINE Alu 1 296 -16 545 255 254 61 chr12 107134307 107135138 -37147351 - HAL1 LINE L1 -2 2505 1515 1654 159 27 10 chr12 107135242 107135543 -37146946 + AluJb SINE Alu 3 308 -4 1719 261 111 77 chr12 107135887 107136125 -37146364 - HAL1 LINE L1 -1109 1398 1170 407 70 0 0 chr12 107136125 107136182 -37146307 - L1PA10 LINE L1 -10 6158 6102 1719 261 111 77 chr12 107136182 107137146 -37145343 - HAL1 LINE L1 -1337 1170 154 402 320 0 10 chr12 107137421 107137521 -37144968 + MIR SINE MIR 3 101 -161 847 251 19 0 chr12 107137673 107137880 -37144609 - MIR SINE MIR -48 214 4 251 286 26 0 chr12 107138436 107138513 -37143976 + L1ME1 LINE L1 69 147 -5923 3406 223 79 40 chr12 107139119 107140029 -37142460 + L1ME1 LINE L1 391 1338 -4742 1532 92 9 9 chr12 107140029 107140258 -37142231 + L1PB1 LINE L1 5916 6144 -7 3406 223 79 40 chr12 107140258 107140659 -37141830 + L1ME1 LINE L1 1338 1722 -4358 3457 217 48 35 chr12 107140671 107141097 -37141392 + L1ME1 LINE L1 4751 5170 -928 2255 98 0 0 chr12 107141097 107141383 -37141106 + AluSg SINE Alu 1 286 -24 3457 217 48 35 chr12 107141383 107141521 -37140968 + L1ME1 LINE L1 5170 5305 -793 537 114 0 0 chr12 107141521 107141600 -37140889 + MADE1 DNA Mariner 2 80 0 3457 217 48 35 chr12 107141600 107142375 -37140114 + L1ME1 LINE L1 5305 6096 -2 21 71 0 0 chr12 107142359 107142401 -37140088 + AT_rich Low_complexity Low_complexity 1 42 0 * 250 281 70 35 chr12 107142417 107142531 -37139958 + MIR SINE MIR 53 170 -92 293 341 41 59 chr12 107142568 107142738 -37139751 + L2 LINE L2 2932 3098 -174 2262 65 35 10 chr12 107142772 107143062 -37139427 - AluY SINE Alu -12 299 3 3100 129 2 6 chr12 107143066 107143548 -37138941 - L1PB3 LINE L1 0 6154 5675 1210 121 30 19 chr12 107143548 107143773 -37138716 - L1MC/D LINE L1 -587 5567 5344 213 175 0 0 chr12 107143987 107144027 -37138462 + (TA)n Simple_repeat Simple_repeat 1 40 0 1476 164 47 3 chr12 107144658 107144956 -37137533 + MER33 DNA MER1_type 1 311 -13 216 326 111 26 chr12 107144984 107145174 -37137315 + MIR SINE MIR 2 207 -55 261 0 0 0 chr12 107146431 107146460 -37136029 + (CA)n Simple_repeat Simple_repeat 2 30 0 291 313 39 67 chr12 107146633 107146812 -37135677 - MIR SINE MIR -43 219 46 278 238 24 24 chr12 107147359 107147443 -37135046 - MER5B DNA MER1_type -89 89 6 2500 166 13 22 chr12 107147606 107148030 -37134459 + MLT2C2 LTR ERVL 2 423 -41 468 0 0 0 chr12 107148030 107148082 -37134407 + (TG)n Simple_repeat Simple_repeat 2 53 0 2500 166 13 22 chr12 107148082 107148116 -37134373 + MLT2C2 LTR ERVL 423 456 -8 182 355 43 0 chr12 107148124 107148217 -37134272 - MIR SINE MIR -7 255 159 644 248 12 0 chr12 107148423 107148584 -37133905 - L1MB7 LINE L1 -204 5980 5818 614 196 84 38 chr12 107148599 107148773 -37133716 - L1MB7 LINE L1 -540 5640 5461 263 70 0 23 chr12 107148773 107148816 -37133673 + (TG)n Simple_repeat Simple_repeat 2 43 0 614 196 84 38 chr12 107148816 107148847 -37133642 - L1MB7 LINE L1 -719 5461 5433 800 147 0 31 chr12 107148848 107148977 -37133512 - FLAM_C SINE Alu -18 125 1 653 148 8 0 chr12 107148977 107149099 -37133390 - L1MB7 LINE L1 -737 5441 5319 803 201 50 53 chr12 107149136 107149439 -37133050 + L1MC5 LINE L1 7581 7882 -79 2298 100 0 0 chr12 107149460 107149760 -37132729 - AluY SINE Alu -11 300 1 1950 276 124 14 chr12 107149781 107150514 -37131975 + HAL1 LINE L1 12 825 -1682 2472 60 0 3 chr12 107150586 107150887 -37131602 + AluY SINE Alu 1 300 -11 1879 146 0 0 chr12 107151122 107151410 -37131079 - L1PA16 LINE L1 -187 5979 5692 329 281 0 0 chr12 107151413 107151495 -37130994 + HAL1 LINE L1 816 897 -1610 764 179 0 8 chr12 107151594 107151728 -37130761 + AluJ SINE Alu 1 133 -169 429 70 0 0 chr12 107151731 107151788 -37130701 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 207 0 0 0 chr12 107151787 107151810 -37130679 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 * 1271 126 0 0 chr12 107151813 107151987 -37130502 + AluJ SINE Alu 130 303 -9 929 179 89 0 chr12 107151995 107152185 -37130304 + MER47A DNA MER2_type 1 207 -159 34 0 0 0 chr12 107152214 107152248 -37130241 + AT_rich Low_complexity Low_complexity 1 34 0 1249 152 54 0 chr12 107152273 107152477 -37130012 + MER47A DNA MER2_type 152 366 0 1173 219 0 8 chr12 107152477 107152719 -37129770 + MLT2D LTR ERVL 1 240 -174 459 122 184 0 chr12 107152724 107152822 -37129667 - MLT2B1 LTR ERVL 0 520 405 264 269 9 83 chr12 107152831 107152939 -37129550 + MLT2B1 LTR ERVL 421 520 0 617 193 58 12 chr12 107152980 107153151 -37129338 + HAL1 LINE L1 1209 1387 -1120 2730 170 23 40 chr12 107153425 107154001 -37128488 - L1MA9 LINE L1 -37 6275 5710 23 33 0 0 chr12 107155297 107155327 -37127162 + AT_rich Low_complexity Low_complexity 1 30 0 312 198 74 0 chr12 107155486 107155567 -37126922 + MIR SINE MIR 176 262 0 246 62 0 0 chr12 107156282 107156314 -37126175 + (ATG)n Simple_repeat Simple_repeat 3 34 0 323 253 71 40 chr12 107156399 107156498 -37125991 - MIR3 SINE MIR -38 170 69 189 245 0 0 chr12 107156499 107156548 -37125941 + (ATGGTG)n Simple_repeat Simple_repeat 5 53 0 754 287 19 5 chr12 107156563 107156772 -37125717 - MIR SINE MIR -48 214 3 1947 118 7 0 chr12 107157358 107157630 -37124859 - AluSx SINE Alu -14 298 25 487 129 0 0 chr12 107157755 107157825 -37124664 - AluS SINE Alu -242 71 2 2344 96 0 0 chr12 107157853 107158155 -37124334 + AluSg SINE Alu 1 302 -8 336 305 31 61 chr12 107158232 107158425 -37124064 - MIR SINE MIR -58 150 16 323 231 22 44 chr12 107159206 107159297 -37123192 + MLT1K LTR MaLR 45 133 -455 456 297 8 0 chr12 107159433 107159551 -37122938 + MIR SINE MIR 29 147 -115 * 772 287 115 56 chr12 107159549 107160182 -37122307 - L2 LINE L2 0 3313 2649 311 269 174 12 chr12 107160204 107160371 -37122118 - L2 LINE L2 -813 2501 2308 1870 122 72 0 chr12 107160382 107160547 -37121942 - AluSx SINE Alu -14 298 104 240 35 0 0 chr12 107160547 107160576 -37121913 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1870 122 72 0 chr12 107160576 107160688 -37121801 - AluSx SINE Alu -208 104 1 326 227 67 0 chr12 107160699 107160774 -37121715 + MIR SINE MIR 183 262 0 831 183 180 0 chr12 107161184 107161316 -37121173 - MER33 DNA MER1_type -2262 362 255 1072 137 5 43 chr12 107161316 107161527 -37120962 + L1PB1 LINE L1 5947 6149 -2 831 183 180 0 chr12 107161527 107161653 -37120836 - MER33 DNA MER1_type -2369 255 3 2093 137 0 0 chr12 107161822 107162121 -37120368 - AluSx SINE Alu -13 299 1 288 347 11 0 chr12 107162348 107162443 -37120046 - MER5B DNA MER1_type -82 96 1 2254 169 13 0 chr12 107163177 107163562 -37118927 - MLT1B LTR MaLR 0 390 1 191 325 149 18 chr12 107163682 107163796 -37118693 + MER5B DNA MER1_type 1 129 -49 228 305 179 13 chr12 107164426 107164577 -37117912 - L2 LINE L2 -5 3308 3133 234 0 0 0 chr12 107165443 107165469 -37117020 + (A)n Simple_repeat Simple_repeat 1 26 0 1727 176 7 7 chr12 107165928 107166229 -37116260 + AluJb SINE Alu 1 301 -11 196 333 83 0 chr12 107166290 107166362 -37116127 - L3 LINE CR1 -52 1525 1448 3414 168 65 34 chr12 107166368 107166848 -37115641 - L1MA9 LINE L1 -38 6274 5761 450 0 0 0 chr12 107166848 107166898 -37115591 + (TG)n Simple_repeat Simple_repeat 2 51 0 3414 168 65 34 chr12 107166898 107167173 -37115316 - L1MA9 LINE L1 -551 5761 5496 1125 145 53 5 chr12 107167183 107167390 -37115099 - L1MA9 LINE L1 -1312 4834 4618 1901 148 25 40 chr12 107167678 107167721 -37114768 + L1MB8 LINE L1 5785 5827 -351 2149 84 63 0 chr12 107167721 107168008 -37114481 + AluSx SINE Alu 1 305 -7 1901 148 25 40 chr12 107168008 107168364 -37114125 + L1MB8 LINE L1 5827 6178 0 207 284 86 0 chr12 107168544 107168625 -37113864 - MIR SINE MIR 0 262 175 421 292 110 6 chr12 107168644 107168811 -37113678 - MIR SINE MIR -43 219 37 817 192 89 33 chr12 107169270 107169541 -37112948 - L1MC5 LINE L1 -36 7925 7640 1571 148 49 95 chr12 107169614 107169985 -37112504 - MER93b LTR ERV1 0 373 19 2279 114 0 0 chr12 107169985 107170282 -37112207 - AluSx SINE Alu -15 297 1 1571 148 49 95 chr12 107170282 107170301 -37112188 - MER93b LTR ERV1 -354 19 1 320 299 47 16 chr12 107170543 107170670 -37111819 - L3 LINE CR1 -1200 377 247 305 265 12 12 chr12 107171725 107171808 -37110681 + LTR16C LTR ERVL 408 490 -1 2167 122 3 0 chr12 107172579 107172874 -37109615 + AluSq SINE Alu 6 301 -12 406 320 33 50 chr12 107173156 107173337 -37109152 + HERVL LTR ERVL 1390 1567 -3429 1951 162 64 0 chr12 107173338 107173683 -37108806 - MLT1C LTR MaLR 0 467 101 1283 303 79 41 chr12 107173774 107174329 -37108160 + HERVL LTR ERVL 1738 2313 -2683 469 267 33 0 chr12 107174443 107174563 -37107926 + MER5C DNA MER1_type 1 124 -200 963 340 22 12 chr12 107174715 107175278 -37107211 + HERVL LTR ERVL 3793 4435 -1329 1750 165 29 52 chr12 107175443 107175788 -37106701 + MER1B DNA MER1_type 1 337 0 632 240 65 0 chr12 107176099 107176253 -37106236 - MIR SINE MIR -98 164 1 26 30 0 0 chr12 107176384 107176417 -37106072 + AT_rich Low_complexity Low_complexity 1 33 0 479 258 114 3 chr12 107176808 107176940 -37105549 + MIR SINE MIR 6 149 -59 1405 168 28 28 chr12 107177319 107177641 -37104848 + MER33 DNA MER1_type 2 323 -1 2268 150 34 92 chr12 107178090 107178642 -37103847 - MLT2B1 LTR ERVL 0 520 1 2054 102 52 68 chr12 107178726 107179107 -37103382 + THE1C LTR MaLR 1 375 0 26 64 0 0 chr12 107179462 107179509 -37102980 + AT_rich Low_complexity Low_complexity 1 47 0 1101 239 37 0 chr12 107179588 107179831 -37102658 + MIR SINE MIR 11 262 0 220 326 126 0 chr12 107180158 107180253 -37102236 - L2 LINE L2 -8 3264 3158 1832 170 122 6 chr12 107180295 107180648 -37101841 + MSTD LTR MaLR 3 396 0 239 395 0 0 chr12 107180661 107180775 -37101714 - L2 LINE L2 -290 2982 2869 294 350 36 43 chr12 107180869 107181009 -37101480 - L2 LINE L2 -233 3039 2901 259 204 0 20 chr12 107181485 107181534 -37100955 - MER96B DNA MER1_type? 0 417 370 622 206 67 6 chr12 107181554 107181719 -37100770 - MER96B DNA MER1_type? -242 175 1 256 206 59 59 chr12 107181719 107181787 -37100702 + L2 LINE L2 3204 3271 -1 1516 192 105 9 chr12 107182144 107182477 -37100012 + MLT1A1 LTR MaLR 1 365 0 491 240 97 34 chr12 107182512 107182687 -37099802 + L2 LINE L2 3083 3268 -45 401 254 148 0 chr12 107182801 107182923 -37099566 + L1MEd LINE L1 116 255 -5864 614 250 44 33 chr12 107182997 107183177 -37099312 + L1MEd LINE L1 394 575 -5544 457 235 15 15 chr12 107183177 107183313 -37099176 + LTR41 LTR ERVL 1 136 -637 23 33 0 0 chr12 107183369 107183399 -37099090 + AT_rich Low_complexity Low_complexity 1 30 0 1434 200 163 45 chr12 107183901 107184366 -37098123 + MLT2B1 LTR ERVL 1 520 0 360 262 56 95 chr12 107184697 107184949 -37097540 + MLT1K LTR MaLR 333 574 -14 878 198 0 18 chr12 107185268 107185435 -37097054 + FRAM SINE Alu 2 165 -1 32 0 0 0 chr12 107185466 107185498 -37096991 + AT_rich Low_complexity Low_complexity 1 32 0 2661 7 0 0 chr12 107185885 107186209 -37096280 - AluYb8 SINE Alu 0 324 1 11258 28 0 0 chr12 107186891 107188229 -37094260 - L1PA4 LINE L1 -755 5391 4054 6353 33 3 1 chr12 107188229 107188983 -37093506 + L1PA4 LINE L1 5390 6152 -3 11192 142 25 13 chr12 107189273 107192337 -37090152 - L1MA3 LINE L1 -2 6303 3199 1522 217 87 40 chr12 107193003 107193479 -37089010 - MLT1E3 LTR MaLR -32 592 40 1835 140 76 25 chr12 107193479 107193835 -37088654 - THE1C LTR MaLR -1 374 1 1522 217 87 40 chr12 107193835 107193870 -37088619 - MLT1E3 LTR MaLR -584 40 8 859 144 0 0 chr12 107193996 107194121 -37088368 + FLAM_C SINE Alu 1 125 -8 1964 245 58 29 chr12 107195620 107196172 -37086317 + MLT1E LTR MaLR 26 593 0 1936 146 7 0 chr12 107196733 107197021 -37085468 - AluJo SINE Alu -22 290 1 801 151 14 22 chr12 107197023 107197162 -37085327 - FLAM_C SINE Alu -5 138 1 460 311 61 8 chr12 107198625 107198757 -37083732 + L2 LINE L2 3134 3272 0 230 426 62 5 chr12 107198899 107199094 -37083395 - L2 LINE L2 -553 2761 2556 305 276 60 43 chr12 107199155 107199271 -37083218 - L2 LINE L2 -2 3270 3153 293 353 96 34 chr12 107199438 107200167 -37082322 - L2 LINE L2 -834 2480 1707 298 319 88 9 chr12 107200305 107200418 -37082071 - L2 LINE L2 0 3313 3192 449 337 111 26 chr12 107200574 107200924 -37081565 + MLT1K LTR MaLR 204 583 -5 2512 106 22 6 chr12 107201045 107201403 -37081086 - THE1B LTR MaLR 0 364 1 1718 50 27 0 chr12 107201443 107201664 -37080825 - L1PA7 LINE L1 -2 6152 5926 185 262 48 101 chr12 107201890 107202058 -37080431 + L2 LINE L2 2933 3091 -181 207 375 73 22 chr12 107202485 107202621 -37079868 - L2 LINE L2 -221 3051 2909 * 963 285 116 36 chr12 107202620 107203058 -37079431 - L2 LINE L2 -11 3302 2830 185 234 85 0 chr12 107203379 107203426 -37079063 - MIR3 SINE MIR -49 159 109 278 219 0 14 chr12 107203682 107203755 -37078734 + MLT1I LTR MaLR 338 409 0 1489 159 66 27 chr12 107203931 107204265 -37078224 - MLT1A2 LTR MaLR -26 348 4 378 303 12 30 chr12 107204268 107204433 -37078056 + MLT1H LTR MaLR 99 260 -289 1894 212 106 70 chr12 107205221 107205825 -37076664 - MLT1E2 LTR MaLR 0 626 1 248 316 178 13 chr12 107206670 107206822 -37075667 - MIR SINE MIR -65 197 21 879 233 101 0 chr12 107207352 107207541 -37074948 + MER58A DNA MER1_type 2 209 -15 195 42 0 0 chr12 107207588 107207612 -37074877 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 1517 158 54 50 chr12 107207612 107207891 -37074598 - AluJo SINE Alu -32 280 1 2149 239 84 59 chr12 107207893 107209001 -37073488 - HAL1 LINE L1 -127 2380 1245 262 276 181 0 chr12 107209029 107209134 -37073355 - MLT1H LTR MaLR -17 532 409 1413 186 11 43 chr12 107209230 107209510 -37072979 + AluJo SINE Alu 7 277 -35 239 119 0 0 chr12 107209600 107209642 -37072847 + L1MA5 LINE L1 6223 6264 -36 586 183 58 119 chr12 107209855 107210200 -37072289 - HAL1 LINE L1 -1264 1243 920 355 275 43 29 chr12 107210417 107210555 -37071934 - HAL1 LINE L1 -2320 187 48 805 145 192 57 chr12 107212300 107212493 -37069996 + MER20 DNA MER1_type 1 219 0 2054 26 4 0 chr12 107212920 107213154 -37069335 + AluY SINE Alu 77 311 0 2145 123 3 13 chr12 107213624 107213926 -37068563 + AluSx SINE Alu 1 299 -13 223 304 14 0 chr12 107213930 107213999 -37068490 + (TAAA)n Simple_repeat Simple_repeat 4 73 0 275 293 83 68 chr12 107214627 107214832 -37067657 + MIR SINE MIR 34 241 -21 229 331 0 34 chr12 107215185 107215359 -37067130 + MIR SINE MIR 18 244 -18 362 323 78 72 chr12 107215479 107215940 -37066549 - L2 LINE L2 0 3272 2809 2050 136 0 26 chr12 107216006 107216316 -37066173 - AluJb SINE Alu -10 302 1 2166 84 0 71 chr12 107216686 107217009 -37065480 - AluY SINE Alu -11 300 1 2136 113 0 3 chr12 107218578 107218910 -37063579 + AluSx SINE Alu 1 331 0 4518 126 38 0 chr12 107219707 107220454 -37062035 - L1PA8A LINE L1 -2 6129 5382 2510 56 0 0 chr12 107220454 107220756 -37061733 - AluY SINE Alu -9 302 1 4518 126 38 0 chr12 107220756 107221017 -37061472 - L1PA8A LINE L1 -749 5382 5132 250 318 0 0 chr12 107222008 107222074 -37060415 + CT-rich Low_complexity Low_complexity 3 68 0 2232 219 113 15 chr12 107222666 107223285 -37059204 + L1MC4 LINE L1 6635 7353 -455 1945 126 40 7 chr12 107223285 107223586 -37058903 + AluSx SINE Alu 1 311 -1 2232 219 113 15 chr12 107223586 107223982 -37058507 + L1MC4 LINE L1 7353 7709 -99 35 24 0 0 chr12 107224023 107224065 -37058424 + AT_rich Low_complexity Low_complexity 1 42 0 31 68 0 0 chr12 107224762 107224821 -37057668 + AT_rich Low_complexity Low_complexity 1 59 0 560 309 69 10 chr12 107224839 107225043 -37057446 - MIR SINE MIR 0 262 47 1003 166 0 0 chr12 107225065 107225216 -37057273 - FRAM SINE Alu -15 161 11 2375 81 0 7 chr12 107225272 107225580 -37056909 + AluSc SINE Alu 3 308 -1 2080 89 4 7 chr12 107225920 107226200 -37056289 + AluY SINE Alu 1 279 -32 333 0 0 0 chr12 107226200 107226237 -37056252 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 2681 128 34 0 chr12 107226303 107226710 -37055779 + MSTB LTR MaLR 5 425 -1 1735 162 0 19 chr12 107226860 107227126 -37055363 - AluJo SINE Alu -49 263 3 245 263 79 125 chr12 107227429 107227581 -37054908 + MIR SINE MIR 2 146 -116 448 287 19 45 chr12 107227742 107227899 -37054590 - MER5A DNA MER1_type -1 188 36 241 267 38 0 chr12 107227927 107228032 -37054457 + L1ME LINE L1 5794 5902 -219 372 317 49 37 chr12 107228338 107228502 -37053987 + L2 LINE L2 2936 3101 -171 8438 106 72 8 chr12 107229531 107230911 -37051578 + Tigger1 DNA MER2_type 37 1505 -913 1871 147 7 13 chr12 107230941 107231241 -37051248 + AluJb SINE Alu 1 298 -14 4359 132 69 14 chr12 107231241 107232034 -37050455 + Tigger1 DNA MER2_type 1582 2418 0 610 160 0 0 chr12 107232233 107232327 -37050162 + AluJb SINE Alu 1 94 -218 818 148 0 0 chr12 107232383 107232498 -37049991 - AluJb SINE Alu -197 115 1 704 91 0 0 chr12 107232498 107232597 -37049892 - Tigger1 DNA MER2_type -829 1589 1491 927 223 15 24 chr12 107232598 107232804 -37049685 + AluJb SINE Alu 87 290 -22 1723 108 27 6 chr12 107233085 107233414 -37049075 - L1PA16 LINE L1 -633 5533 5200 3507 138 33 0 chr12 107233414 107233992 -37048497 + L1PA16 LINE L1 5559 6158 -8 1466 212 19 76 chr12 107234448 107234787 -37047702 - MSTD LTR MaLR 0 396 84 1676 181 7 20 chr12 107234787 107235090 -37047399 - AluJo SINE Alu -11 301 3 1466 212 19 76 chr12 107235090 107235170 -37047319 - MSTD LTR MaLR -312 84 1 22 35 0 0 chr12 107236638 107236667 -37045822 + AT_rich Low_complexity Low_complexity 1 29 0 689 344 130 25 chr12 107237277 107237931 -37044558 + L3 LINE CR1 320 1042 -535 250 272 43 37 chr12 107237992 107238154 -37044335 - L1ME4a LINE L1 -75 6046 5884 808 314 101 44 chr12 107238184 107238688 -37043801 + L3 LINE CR1 1044 1576 -1 353 219 34 84 chr12 107238804 107238923 -37043566 - MIR SINE MIR -44 218 106 485 271 142 0 chr12 107239283 107239438 -37043051 + MIR SINE MIR 53 229 -33 21 0 0 0 chr12 107239974 107239995 -37042494 + AT_rich Low_complexity Low_complexity 1 21 0 417 298 167 45 chr12 107242158 107242647 -37039842 - L1M2 LINE L1 -5734 1115 564 532 274 36 6 chr12 107243349 107243517 -37038972 - MIR SINE MIR -81 181 9 587 246 150 21 chr12 107243568 107243755 -37038734 - MIR SINE MIR -12 250 40 234 348 43 0 chr12 107244653 107244745 -37037744 + MIR3 SINE MIR 111 206 -2 401 187 0 0 chr12 107244829 107244904 -37037585 - AluS SINE Alu -8 302 228 1826 113 4 0 chr12 107244845 107245092 -37037397 - AluSx SINE Alu -24 288 41 31 0 0 0 chr12 107245101 107245132 -37037357 + AT_rich Low_complexity Low_complexity 1 31 0 2283 92 0 3 chr12 107245191 107245514 -37036975 + AluY SINE Alu 1 322 0 1486 200 58 7 chr12 107247259 107247569 -37034920 - MER58B DNA MER1_type 0 341 16 2142 117 0 0 chr12 107247774 107248115 -37034374 + AluSx SINE Alu 1 341 0 718 221 165 6 chr12 107248197 107248519 -37033970 - LTR50 LTR ERVL -242 553 86 4014 152 35 123 chr12 107248856 107249857 -37032632 - MER21A LTR ERV1 -6 925 13 27 0 0 0 chr12 107250095 107250122 -37032367 + AT_rich Low_complexity Low_complexity 1 27 0 16468 58 3 10 chr12 107250192 107252337 -37030152 + L1P LINE L1 2953 5081 -1065 7564 59 1 2 chr12 107252444 107253851 -37028638 + L1PA6 LINE L1 4751 6154 0 192 40 0 0 chr12 107253857 107253882 -37028607 + (CAA)n Simple_repeat Simple_repeat 1 25 0 214 258 169 11 chr12 107253910 107253999 -37028490 - MIR SINE MIR 0 262 160 2240 122 3 0 chr12 107254004 107254308 -37028181 - AluSx SINE Alu -7 305 1 646 204 28 63 chr12 107254993 107255135 -37027354 + FRAM SINE Alu 22 158 -18 616 308 60 48 chr12 107255190 107255505 -37026984 - L2 LINE L2 -1 3271 2953 1237 227 3 48 chr12 107256309 107256604 -37025885 + AluJo SINE Alu 1 282 -30 2176 143 61 26 chr12 107256741 107256941 -37025548 - MLT1B LTR MaLR 0 390 198 2835 16 0 0 chr12 107256941 107257250 -37025239 - AluYa5 SINE Alu -2 309 1 2176 143 61 26 chr12 107257250 107257426 -37025063 - MLT1B LTR MaLR -192 198 1 1831 174 161 115 chr12 107257446 107258141 -37024348 - LTR8A LTR ERV1 0 727 1 1871 68 57 11 chr12 107258307 107258570 -37023919 + AluYa5 SINE Alu 23 297 -14 33 0 0 0 chr12 107258571 107258604 -37023885 + AT_rich Low_complexity Low_complexity 1 33 0 1462 176 77 61 chr12 107258604 107258967 -37023522 + LTR49 LTR ERV1 227 595 0 10540 66 2 5 chr12 107259602 107261669 -37020820 - L1PA6 LINE L1 -94 6060 4000 41583 62 17 3 chr12 107261780 107267464 -37015025 - L1P2 LINE L1 -373 5781 11 194 303 0 15 chr12 107267485 107267551 -37014938 - L2 LINE L2 -2226 1088 1024 1188 236 104 6 chr12 107267597 107267856 -37014633 - MLT1C LTR MaLR 0 467 166 438 75 0 0 chr12 107267856 107267923 -37014566 + (TG)n Simple_repeat Simple_repeat 2 68 0 1188 236 104 6 chr12 107267923 107267998 -37014491 - MLT1C LTR MaLR -301 166 100 188 310 141 50 chr12 107268039 107268336 -37014153 + L2 LINE L2 2367 2690 -624 354 345 29 17 chr12 107269251 107269528 -37012961 + L2 LINE L2 2681 3033 -280 253 299 152 33 chr12 107269605 107269816 -37012673 - HAL1b LINE L1 -637 711 476 355 231 0 0 chr12 107269823 107269888 -37012601 + MLT1L LTR MaLR 11 75 -540 388 182 0 0 chr12 107269928 107269994 -37012495 + MLT1L LTR MaLR 166 231 -384 635 257 134 10 chr12 107270068 107270270 -37012219 + MLT1L LTR MaLR 389 615 0 2405 287 101 25 chr12 107270468 107270651 -37011838 + L2 LINE L2 1206 1374 -1940 2484 170 57 0 chr12 107270651 107271056 -37011433 + MSTA LTR MaLR 1 428 0 2405 287 101 25 chr12 107271056 107271105 -37011384 + L2 LINE L2 1374 1418 -1896 383 321 123 59 chr12 107271105 107271528 -37010961 + LTR16A LTR ERVL 1 450 0 2405 287 101 25 chr12 107271528 107272111 -37010378 + L2 LINE L2 1418 2118 -1196 1909 107 8 0 chr12 107272111 107272372 -37010117 - AluSx SINE Alu -18 294 32 2405 287 101 25 chr12 107272372 107272572 -37009917 + L2 LINE L2 2118 2301 -1013 2078 123 13 28 chr12 107272670 107272988 -37009501 - AluSq SINE Alu 0 313 1 1533 130 96 66 chr12 107272997 107273298 -37009191 - AluJb SINE Alu -2 310 1 334 323 79 6 chr12 107273556 107273720 -37008769 - L3 LINE CR1 -1282 295 120 2414 129 96 0 chr12 107273742 107274129 -37008360 - MSTC LTR MaLR 0 428 5 3325 220 69 12 chr12 107274581 107275883 -37006606 + L1ME1 LINE L1 4781 6160 -6 195 184 0 0 chr12 107276395 107276433 -37006056 + (CAT)n Simple_repeat Simple_repeat 3 40 0 1928 122 40 33 chr12 107276527 107276831 -37005658 + AluSx SINE Alu 1 306 -6 1225 190 18 9 chr12 107277109 107277335 -37005154 - AluJo SINE Alu -84 228 1 1598 151 14 91 chr12 107277506 107277857 -37004632 + MLT1A2 LTR MaLR 1 324 -50 2275 101 0 3 chr12 107278137 107278433 -37004056 + AluSq SINE Alu 1 295 -18 2714 236 100 80 chr12 107278677 107279476 -37003013 - HAL1 LINE L1 -16 2491 1647 1988 163 0 0 chr12 107279476 107279770 -37002719 - AluSx SINE Alu -18 294 1 2714 236 100 80 chr12 107279770 107280429 -37002060 - HAL1 LINE L1 -860 1647 1003 479 174 0 0 chr12 107280465 107280534 -37001955 + FRAM SINE Alu 71 139 -37 405 0 0 0 chr12 107280534 107280579 -37001910 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 335 311 123 0 chr12 107280586 107280708 -37001781 - Charlie8 DNA MER1_type -2280 137 1 851 50 0 10 chr12 107280764 107280865 -37001624 + HY3 scRNA scRNA 1 100 -1 2060 119 41 0 chr12 107280880 107281175 -37001314 + AluSp SINE Alu 1 307 -6 2142 127 13 0 chr12 107281177 107281485 -37001004 + AluSx SINE Alu 1 312 0 2515 71 0 0 chr12 107281614 107281923 -37000566 + AluY SINE Alu 1 309 -2 346 308 0 0 chr12 107283373 107283477 -36999012 + HAL1 LINE L1 1441 1544 -963 1361 211 3 32 chr12 107283549 107283833 -36998656 + AluJo SINE Alu 21 296 -16 276 200 0 0 chr12 107283835 107283895 -36998594 + GA-rich Low_complexity Low_complexity 3 62 0 1878 174 0 13 chr12 107283928 107284244 -36998245 + AluJb SINE Alu 1 312 0 2205 94 7 3 chr12 107285337 107285636 -36996853 + AluSx SINE Alu 1 300 -12 1563 164 58 0 chr12 107286555 107286686 -36995803 + AluJo SINE Alu 1 123 -189 2374 84 0 3 chr12 107286686 107286982 -36995507 + AluSx SINE Alu 1 295 -17 1563 164 58 0 chr12 107286982 107287125 -36995364 + AluJo SINE Alu 123 291 -21 684 192 24 40 chr12 107287321 107287446 -36995043 + FLAM_A SINE Alu 1 123 -10 214 230 14 40 chr12 107287840 107287914 -36994575 + CT-rich Low_complexity Low_complexity 3 74 0 2028 125 3 14 chr12 107288035 107288332 -36994157 + AluSx SINE Alu 1 294 -18 378 252 73 101 chr12 107288589 107288807 -36993682 + L2 LINE L2 3102 3313 0 947 150 0 0 chr12 107289054 107289187 -36993302 - FLAM_C SINE Alu 0 133 1 383 197 42 0 chr12 107290241 107290312 -36992177 + MIR SINE MIR 92 165 -97 488 211 31 62 chr12 107290430 107290591 -36991898 - MIR SINE MIR -11 251 96 2324 105 10 0 chr12 107291048 107291352 -36991137 + AluSx SINE Alu 1 307 -5 2416 87 3 3 chr12 107291588 107291898 -36990591 - AluSx SINE Alu -2 310 1 205 345 50 25 chr12 107291969 107292088 -36990401 - L2 LINE L2 0 3313 3192 266 191 0 0 chr12 107292096 107292143 -36990346 + L2 LINE L2 3263 3309 -4 960 179 15 25 chr12 107292412 107292608 -36989881 + AluJb SINE Alu 118 311 -1 237 339 222 24 chr12 107292630 107292988 -36989501 - L2 LINE L2 -457 2857 2571 2020 130 7 0 chr12 107292988 107293281 -36989208 + AluSx SINE Alu 1 295 -17 237 339 222 24 chr12 107293281 107293383 -36989106 - L2 LINE L2 -743 2571 2491 2184 109 0 0 chr12 107293383 107293694 -36988795 + AluSg SINE Alu 1 311 0 237 339 222 24 chr12 107293694 107293791 -36988698 - L2 LINE L2 -823 2491 2415 1359 164 68 25 chr12 107293791 107294071 -36988418 + AluJo SINE Alu 1 292 -20 2237 84 0 3 chr12 107294073 107294359 -36988130 + AluY SINE Alu 1 285 -26 237 339 222 24 chr12 107294359 107294376 -36988113 - L2 LINE L2 -899 2415 2403 533 72 12 0 chr12 107294376 107294459 -36988030 + (TA)n Simple_repeat Simple_repeat 1 84 0 222 37 0 0 chr12 107294462 107294489 -36988000 + (GA)n Simple_repeat Simple_repeat 2 28 0 237 339 222 24 chr12 107294489 107295306 -36987183 - L2 LINE L2 -912 2402 1177 1776 147 108 3 chr12 107295311 107295618 -36986871 + MER44D DNA MER2_type 1 609 0 328 235 191 57 chr12 107295870 107296100 -36986389 + MIR SINE MIR 2 262 0 213 94 0 0 chr12 107296672 107296704 -36985785 + (T)n Simple_repeat Simple_repeat 1 32 0 874 164 0 8 chr12 107297004 107297138 -36985351 - FLAM_C SINE Alu 0 133 1 31 26 0 0 chr12 107297138 107297176 -36985313 + AT_rich Low_complexity Low_complexity 1 38 0 2101 106 7 3 chr12 107297474 107297783 -36984706 - AluSx SINE Alu 0 310 1 218 204 0 56 chr12 107297883 107297991 -36984498 + CT-rich Low_complexity Low_complexity 2 103 0 1676 146 13 47 chr12 107298097 107298398 -36984091 + AluJo SINE Alu 11 301 -11 516 203 0 0 chr12 107298575 107298654 -36983835 + AluJb SINE Alu 136 214 -98 928 121 0 0 chr12 107298670 107298794 -36983695 - FLAM_C SINE Alu -19 124 1 304 123 0 9 chr12 107298799 107298858 -36983631 + FLAM SINE Alu 72 115 -18 1543 181 7 36 chr12 107298869 107299173 -36983316 + AluJo SINE Alu 1 295 -17 2090 133 7 0 chr12 107299178 107299479 -36983010 + AluSx SINE Alu 1 303 -9 1563 179 4 4 chr12 107299766 107300029 -36982460 + AluJb SINE Alu 1 263 -49 1704 103 68 18 chr12 107300093 107300374 -36982115 + AluSx SINE Alu 1 295 -17 29 28 0 0 chr12 107300811 107300847 -36981642 + AT_rich Low_complexity Low_complexity 1 36 0 199 231 0 0 chr12 107300847 107300886 -36981603 + L3 LINE CR1 1520 1558 -19 6563 128 9 13 chr12 107300973 107301048 -36981441 + L1PB1 LINE L1 4572 4646 -1505 2408 97 0 10 chr12 107301048 107301359 -36981130 + AluSx SINE Alu 1 308 -4 6563 128 9 13 chr12 107301359 107302682 -36979807 + L1PB1 LINE L1 4646 5962 -189 2067 146 3 0 chr12 107302682 107302983 -36979506 + AluSx SINE Alu 1 302 -10 6563 128 9 13 chr12 107302983 107303172 -36979317 + L1PB1 LINE L1 5962 6150 -1 185 106 0 85 chr12 107303177 107303224 -36979265 + (A)n Simple_repeat Simple_repeat 1 43 0 237 152 0 0 chr12 107303452 107303498 -36978991 - LTR66 LTR ERVL -171 439 394 3084 133 21 17 chr12 107303920 107304403 -36978086 + MER31A LTR ERV1 1 485 0 1279 171 28 0 chr12 107304431 107304642 -36977847 - AluJb SINE Alu -9 303 87 381 310 123 23 chr12 107305403 107305574 -36976915 + MIR SINE MIR 14 201 -61 2353 68 3 3 chr12 107305631 107305957 -36976532 - AluSp SINE Alu 0 313 1 261 302 116 16 chr12 107305963 107306092 -36976397 + MER5A DNA MER1_type 1 142 -47 2248 97 0 13 chr12 107306148 107306448 -36976041 - AluSx SINE Alu -15 297 2 1231 170 0 0 chr12 107306598 107306798 -36975691 - AluSg/x SINE Alu -14 298 99 1401 172 107 4 chr12 107306986 107307236 -36975253 + AluJb SINE Alu 1 280 -32 378 0 0 0 chr12 107307236 107307278 -36975211 + (CA)n Simple_repeat Simple_repeat 2 43 0 1882 125 10 24 chr12 107307291 107307588 -36974901 + AluSx SINE Alu 2 294 -18 2345 89 0 0 chr12 107307675 107307967 -36974522 + AluSp SINE Alu 1 292 -21 26 0 0 0 chr12 107307970 107307996 -36974493 + AT_rich Low_complexity Low_complexity 1 26 0 919 131 7 7 chr12 107308148 107308293 -36974196 - FRAM SINE Alu -13 163 19 312 324 55 44 chr12 107308303 107308485 -36974004 - HAL1 LINE L1 -730 1777 1594 506 124 11 45 chr12 107308624 107308713 -36973776 - AluY SINE Alu -5 307 222 1338 107 0 0 chr12 107308717 107308886 -36973603 - AluY SINE Alu -142 169 1 888 134 0 15 chr12 107308896 107309030 -36973459 - FRAM SINE Alu -20 156 25 267 333 0 21 chr12 107309036 107309132 -36973357 - ERVL LTR ERVL -2208 3556 3463 1727 169 0 28 chr12 107309278 107309598 -36972891 + AluJo SINE Alu 1 311 -1 429 266 30 89 chr12 107309608 107309811 -36972678 + MERVL LTR ERVL 3899 4089 -1396 202 205 0 0 chr12 107309872 107309911 -36972578 + CT-rich Low_complexity Low_complexity 2 40 0 1895 136 26 16 chr12 107309913 107310222 -36972267 - AluJb SINE Alu 0 312 1 2023 118 11 0 chr12 107310307 107310587 -36971902 - AluSx SINE Alu -10 302 20 379 315 142 14 chr12 107310602 107310821 -36971668 - HAL1 LINE L1 -1435 1072 826 2382 89 0 9 chr12 107310863 107311179 -36971310 - AluSq SINE Alu 0 313 1 1016 213 18 0 chr12 107311531 107311695 -36970794 - FAM SINE Alu -8 167 1 2119 122 0 0 chr12 107312404 107312692 -36969797 + AluSg SINE Alu 1 288 -22 246 296 26 26 chr12 107313482 107313597 -36968892 + LTR67 LTR ERVL 443 557 0 2299 94 0 19 chr12 107313726 107314033 -36968456 + AluSx SINE Alu 1 301 -11 245 45 0 68 chr12 107314841 107314885 -36967604 - MADE1 DNA Mariner 0 80 40 346 258 132 42 chr12 107315141 107315195 -36967294 - MIR SINE MIR -61 201 153 2278 109 0 10 chr12 107315195 107315499 -36966990 - AluSx SINE Alu -11 301 1 346 258 132 42 chr12 107315499 107315611 -36966878 - MIR SINE MIR -109 153 20 725 206 0 0 chr12 107315853 107315960 -36966529 + FRAM SINE Alu 1 105 -71 1846 167 7 3 chr12 107315997 107316297 -36966192 + AluJo SINE Alu 1 301 -11 2289 108 0 10 chr12 107316302 107316609 -36965880 + AluSg SINE Alu 1 304 -6 401 207 61 0 chr12 107316641 107316723 -36965766 + FLAM_A SINE Alu 44 130 -12 856 222 6 6 chr12 107316730 107316910 -36965579 - FRAM SINE Alu 0 176 1 236 200 0 0 chr12 107316946 107316996 -36965493 + (TA)n Simple_repeat Simple_repeat 1 50 0 28 0 0 0 chr12 107317012 107317040 -36965449 + AT_rich Low_complexity Low_complexity 1 28 0 189 296 14 42 chr12 107317272 107317343 -36965146 + MIR SINE MIR 30 98 -110 337 354 90 0 chr12 107317371 107317515 -36964974 + MIR3 SINE MIR 38 194 -14 1876 150 25 32 chr12 107317528 107317842 -36964647 - AluJb SINE Alu 0 312 1 204 40 0 0 chr12 107319369 107319394 -36963095 + (T)n Simple_repeat Simple_repeat 1 25 0 28 0 0 0 chr12 107320223 107320251 -36962238 + AT_rich Low_complexity Low_complexity 1 28 0 898 120 8 8 chr12 107320415 107320548 -36961941 + FLAM_C SINE Alu 1 133 0 214 314 35 58 chr12 107321264 107321350 -36961139 + L2 LINE L2 3183 3266 -6 265 312 72 16 chr12 107321380 107321505 -36960984 - MIR SINE MIR -49 213 82 200 316 188 8 chr12 107321920 107322037 -36960452 - MIR3 SINE MIR -16 192 55 1639 158 10 36 chr12 107322091 107322395 -36960094 + AluJb SINE Alu 1 296 -16 25 90 0 0 chr12 107322718 107322785 -36959704 + AT_rich Low_complexity Low_complexity 1 67 0 201 323 0 0 chr12 107323378 107323443 -36959046 + MER5B DNA MER1_type 108 172 -6 1507 170 45 55 chr12 107323789 107324101 -36958388 - AluJo SINE Alu -3 309 1 349 320 75 15 chr12 107324479 107324679 -36957810 - L1ME3 LINE L1 -298 5864 5653 1731 172 7 13 chr12 107325169 107325477 -36957012 + AluJb SINE Alu 6 311 -1 2320 104 0 10 chr12 107325523 107325831 -36956658 - AluSg SINE Alu -5 305 1 494 183 150 50 chr12 107325884 107326004 -36956485 - FLAM_C SINE Alu -1 132 1 271 241 101 13 chr12 107326465 107326544 -36955945 - MIR SINE MIR -75 187 102 206 150 25 25 chr12 107326665 107326705 -36955784 + L2 LINE L2 3219 3258 -14 325 179 22 9 chr12 107326773 107326843 -36955646 - Alu SINE Alu -253 50 1 810 161 60 30 chr12 107326929 107326984 -36955505 - L1MA5A LINE L1 -6 6291 6239 1784 151 21 3 chr12 107326984 107327275 -36955214 + AluJo SINE Alu 2 297 -15 810 161 60 30 chr12 107327275 107327387 -36955102 - L1MA5A LINE L1 -58 6239 6119 607 200 17 8 chr12 107327406 107327526 -36954963 + FLAM_A SINE Alu 4 124 -9 333 297 47 8 chr12 107327572 107327700 -36954789 + L1MD2 LINE L1 5926 6058 -301 2140 113 3 13 chr12 107327818 107328118 -36954371 - AluSx SINE Alu -15 297 1 656 239 161 17 chr12 107328761 107328941 -36953548 - MIR SINE MIR -14 248 43 762 165 8 0 chr12 107328949 107329070 -36953419 - MER20 DNA MER1_type -12 207 86 1225 175 67 14 chr12 107329079 107329302 -36953187 - AluJb SINE Alu -75 237 3 1809 176 0 0 chr12 107329508 107329810 -36952679 + AluJb SINE Alu 1 302 -10 230 271 0 17 chr12 107329921 107329980 -36952509 + MIR3 SINE MIR 137 194 -14 2059 128 20 0 chr12 107329986 107330283 -36952206 + AluSq SINE Alu 7 309 -4 1816 149 39 4 chr12 107330389 107330670 -36951819 - AluJb SINE Alu -15 297 7 845 225 35 20 chr12 107330947 107331147 -36951342 - MIR SINE MIR -54 208 6 1334 186 68 54 chr12 107331185 107331480 -36951009 + AluJo SINE Alu 1 299 -13 2101 108 3 35 chr12 107331576 107331890 -36950599 + AluSx SINE Alu 1 304 -8 532 150 0 0 chr12 107331950 107332030 -36950459 + AluJb SINE Alu 54 133 -179 201 39 0 0 chr12 107332059 107332085 -36950404 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1950 120 4 0 chr12 107332099 107332358 -36950131 - AluSx SINE Alu -52 260 1 33 90 0 0 chr12 107332880 107332969 -36949520 + AT_rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr12 107333033 107333055 -36949434 + AT_rich Low_complexity Low_complexity 1 22 0 552 60 0 0 chr12 107333055 107333122 -36949367 - L1PA7 LINE L1 -6 6148 6082 1390 182 28 42 chr12 107333763 107333890 -36948599 + AluJo SINE Alu 1 128 -184 1958 149 0 28 chr12 107333890 107334211 -36948278 + AluSx SINE Alu 1 312 0 1390 182 28 42 chr12 107334211 107334369 -36948120 + AluJo SINE Alu 128 282 -30 2606 50 3 0 chr12 107334606 107334909 -36947580 + AluY SINE Alu 1 304 -7 2270 91 0 7 chr12 107334951 107335249 -36947240 + AluSg SINE Alu 1 296 -14 1700 171 34 87 chr12 107335298 107335654 -36946835 + MER1B DNA MER1_type 1 337 0 1950 78 4 4 chr12 107335680 107335936 -36946553 - AluY SINE Alu -13 298 43 536 263 120 29 chr12 107336048 107336324 -36946165 - L1ME4a LINE L1 -202 5919 5670 2203 100 0 3 chr12 107336324 107336623 -36945866 + AluSg SINE Alu 1 298 -12 1526 152 39 4 chr12 107336633 107336889 -36945600 + AluSx SINE Alu 1 265 -47 536 263 120 29 chr12 107336889 107336951 -36945538 - L1ME4a LINE L1 -459 5662 5538 202 175 50 0 chr12 107336985 107337025 -36945464 + GA-rich Low_complexity Low_complexity 3 44 0 294 29 0 0 chr12 107338010 107338045 -36944444 + (TG)n Simple_repeat Simple_repeat 2 36 0 2133 90 0 0 chr12 107338196 107338474 -36944015 + AluSx SINE Alu 1 278 -34 326 301 90 87 chr12 107338477 107338823 -36943666 - L1M2 LINE L1 -5447 1402 1056 366 246 115 0 chr12 107339415 107339545 -36942944 + MIR SINE MIR 87 231 -31 1191 161 62 66 chr12 107339548 107339749 -36942740 - AluJo SINE Alu -3 309 108 441 0 0 0 chr12 107339749 107339798 -36942691 + (TG)n Simple_repeat Simple_repeat 2 50 0 1191 161 62 66 chr12 107339798 107339900 -36942589 - AluJo SINE Alu -204 108 7 203 279 234 0 chr12 107339910 107340021 -36942468 - MIR3 SINE MIR -5 203 67 * 220 94 0 0 chr12 107339992 107340024 -36942465 - MIR SINE MIR -168 94 63 252 296 101 53 chr12 107340876 107341045 -36941444 + MIR SINE MIR 9 185 -77 453 252 58 49 chr12 107341149 107341405 -36941084 + L1ME3A LINE L1 5777 6039 -125 2146 122 3 3 chr12 107341551 107341855 -36940634 - AluSq SINE Alu -9 304 1 2405 98 0 0 chr12 107342079 107342385 -36940104 - AluSp SINE Alu -7 306 1 231 273 80 23 chr12 107342848 107342936 -36939553 - MIR SINE MIR -38 170 77 218 269 247 21 chr12 107343851 107343944 -36938545 + L2 LINE L2 3180 3293 -20 1734 209 17 9 chr12 107343954 107344299 -36938190 + MLT1A1 LTR MaLR 15 362 -3 856 220 145 14 chr12 107344621 107344833 -36937656 - MER58 DNA MER1_type -8 2412 2229 1653 186 16 10 chr12 107344833 107345139 -36937350 + AluJb SINE Alu 1 308 -4 856 220 145 14 chr12 107345139 107345218 -36937271 - MER58 DNA MER1_type -191 2229 6 386 249 110 99 chr12 107345260 107345738 -36936751 - L2 LINE L2 -47 3225 2728 1210 197 9 9 chr12 107345784 107346002 -36936487 - MLT1A1 LTR MaLR 0 365 148 282 206 0 0 chr12 107346006 107346069 -36936420 + (TA)n Simple_repeat Simple_repeat 2 64 0 891 172 19 6 chr12 107346116 107346273 -36936216 - MLT1A1 LTR MaLR -206 159 1 217 320 64 0 chr12 107347270 107347348 -36935141 + L2 LINE L2 3177 3259 -54 396 0 0 0 chr12 107347404 107347448 -36935041 + (TG)n Simple_repeat Simple_repeat 2 45 0 223 244 0 0 chr12 107347500 107347545 -36934944 + L2 LINE L2 3210 3254 -18 417 277 59 30 chr12 107348848 107349050 -36933439 + L2 LINE L2 3081 3288 -25 257 231 0 0 chr12 107349270 107349322 -36933167 + LTR30 LTR ERV1 1 52 -670 1807 89 37 5 chr12 107349322 107349593 -36932896 + LTR12 LTR ERV1 57 2032 -406 337 231 11 0 chr12 107349593 107349684 -36932805 + LTR30 LTR ERV1 552 643 -79 743 131 15 2 chr12 107349685 107349811 -36932678 + LTR12 LTR ERV1 481 713 -1 1082 227 20 13 chr12 107350950 107351219 -36931270 - MLT1D LTR MaLR 0 505 206 811 161 31 0 chr12 107351240 107351387 -36931102 - MSTC LTR MaLR -245 151 1 280 328 63 11 chr12 107351911 107352023 -36930466 - L1MC/D LINE L1 -2011 5797 5671 222 37 0 0 chr12 107352023 107352050 -36930439 + (TA)n Simple_repeat Simple_repeat 1 27 0 280 328 63 11 chr12 107352050 107352111 -36930378 - L1MC/D LINE L1 -2137 5671 5615 196 224 17 52 chr12 107352671 107352729 -36929760 + L2 LINE L2 3211 3266 -6 30 0 0 0 chr12 107353498 107353528 -36928961 + AT_rich Low_complexity Low_complexity 1 30 0 2217 92 7 0 chr12 107353902 107354205 -36928284 + AluSq SINE Alu 5 309 -4 1434 218 24 27 chr12 107354369 107354647 -36927842 - L1ME1 LINE L1 -5 6161 5883 2397 64 0 13 chr12 107354647 107354961 -36927528 - AluY SINE Alu -1 310 1 1434 218 24 27 chr12 107354961 107355054 -36927435 - L1ME1 LINE L1 -283 5883 5791 21 0 0 0 chr12 107355265 107355286 -36927203 + AT_rich Low_complexity Low_complexity 1 21 0 4160 239 84 16 chr12 107355286 107356589 -36925900 - L1MEc LINE L1 -4970 1426 36 2106 127 0 0 chr12 107356742 107357049 -36925440 - AluSx SINE Alu -5 307 1 516 261 25 8 chr12 107357305 107357424 -36925065 + L2 LINE L2 3191 3311 -2 936 271 73 26 chr12 107357424 107357807 -36924682 - L1ME1 LINE L1 -339 5823 5423 1709 86 171 0 chr12 107358304 107358561 -36923928 + AluSg1 SINE Alu 1 301 -8 189 0 0 0 chr12 107358809 107358830 -36923659 + (TAGGG)n Simple_repeat Simple_repeat 1 21 0 1228 320 52 11 chr12 107358976 107359420 -36923069 + L2 LINE L2 2851 3312 -1 240 310 0 0 chr12 107359435 107359506 -36922983 + (TGAA)n Simple_repeat Simple_repeat 2 72 0 2119 110 3 10 chr12 107359517 107359817 -36922672 + AluSg SINE Alu 1 298 -12 1357 165 26 68 chr12 107360082 107360391 -36922098 - AluJo SINE Alu -16 296 1 1989 124 13 0 chr12 107361630 107361929 -36920560 + AluY SINE Alu 1 303 -8 457 250 149 22 chr12 107362128 107362489 -36920000 - L1ME LINE L1 -460 5702 5296 411 291 57 33 chr12 107362497 107362665 -36919824 - L1ME1 LINE L1 -791 5355 5172 1679 161 4 4 chr12 107362780 107363053 -36919436 - AluJo SINE Alu -37 275 3 836 158 68 7 chr12 107363793 107363939 -36918550 - MER5A DNA MER1_type -33 156 2 1943 125 0 7 chr12 107364346 107364674 -36917815 - AluSx SINE Alu 0 326 1 216 241 0 19 chr12 107364989 107365043 -36917446 + (CA)n Simple_repeat Simple_repeat 2 54 0 370 376 76 0 chr12 107366387 107366544 -36915945 + MIR3 SINE MIR 31 199 -9 2293 98 0 0 chr12 107366558 107366864 -36915625 + AluSg SINE Alu 1 306 -4 473 261 42 8 chr12 107366866 107366985 -36915504 + L2 LINE L2 3188 3310 -3 248 154 39 0 chr12 107368291 107368343 -36914146 + L1MC4a LINE L1 5885 5938 -1870 180 0 0 0 chr12 107368344 107368364 -36914125 + (TG)n Simple_repeat Simple_repeat 2 21 0 1387 50 0 16 chr12 107368421 107368603 -36913886 + L1PA8 LINE L1 5991 6169 -3 621 210 147 38 chr12 107368753 107368962 -36913527 + MIR SINE MIR 18 252 -10 1960 142 3 3 chr12 107369098 107369408 -36913081 + AluSg SINE Alu 1 310 0 243 364 17 8 chr12 107370224 107370342 -36912147 + MER5B DNA MER1_type 28 146 -32 1888 134 14 0 chr12 107370456 107370746 -36911743 - AluJb SINE Alu -18 294 1 27 0 0 0 chr12 107370753 107370780 -36911709 + AT_rich Low_complexity Low_complexity 1 27 0 195 274 235 0 chr12 107371244 107371295 -36911194 + MIR SINE MIR 89 151 -57 376 231 85 54 chr12 107372884 107373014 -36909475 + MIR SINE MIR 101 234 -28 1914 214 81 8 chr12 107373093 107373564 -36908925 + LTR22 LTR ERVK 1 505 -4 5511 110 5 0 chr12 107373570 107374306 -36908183 + HERVK22 LTR ERVK 2 741 -6096 5792 91 8 28 chr12 107374743 107375568 -36906921 + HERVK22 LTR ERVK 2673 3481 -3356 * 24335 79 14 6 chr12 107375557 107378700 -36903789 + HERVK22 LTR ERVK 3670 6837 0 1957 205 66 25 chr12 107378702 107379185 -36903304 + LTR22 LTR ERVK 3 505 -4 1006 147 127 25 chr12 107379864 107380061 -36902428 + 7SLRNA srpRNA srpRNA 95 311 -9 1977 113 7 14 chr12 107380063 107380355 -36902134 + AluSg1 SINE Alu 1 290 -19 28 0 0 0 chr12 107382115 107382143 -36900346 + AT_rich Low_complexity Low_complexity 1 28 0 2106 97 10 0 chr12 107382244 107382533 -36899956 + AluSp SINE Alu 1 292 -21 351 235 0 82 chr12 107384092 107384190 -36898299 - L1MC4 LINE L1 -1339 6703 6614 * 362 296 0 0 chr12 107384115 107384203 -36898286 + L1MC4 LINE L1 6615 6702 -1340 2155 94 0 10 chr12 107385373 107385670 -36896819 + AluSq SINE Alu 1 294 -19 1113 144 0 17 chr12 107385683 107385864 -36896625 + AluJb SINE Alu 129 306 -6 1784 179 72 24 chr12 107385888 107386302 -36896187 + Charlie4a DNA MER1_type 69 502 -6 572 182 0 0 chr12 107386649 107386748 -36895741 + AluSg/x SINE Alu 203 301 -9 1183 126 5 51 chr12 107386750 107386965 -36895524 - LTR24C LTR ERV1 -426 209 5 1340 186 40 11 chr12 107386974 107387249 -36895240 - AluJb SINE Alu -29 283 1 580 188 0 10 chr12 107387267 107387368 -36895121 - LTR23 LTR ERV1 -40 397 298 1664 148 7 26 chr12 107387368 107387673 -36894816 - AluJb SINE Alu -3 309 11 2211 100 0 3 chr12 107389476 107389777 -36892712 - AluSq SINE Alu -13 300 1 468 149 234 0 chr12 107389796 107389890 -36892599 + MER63 DNA MER1_type 7 748 -88 3480 117 48 83 chr12 107389892 107390088 -36892401 - MER4E LTR ERV1 0 779 578 2409 53 3 7 chr12 107390088 107390392 -36892097 + AluY SINE Alu 1 303 -8 3480 117 48 83 chr12 107390392 107390403 -36892086 - MER4E LTR ERV1 -201 578 568 2109 98 3 3 chr12 107390403 107390688 -36891801 + AluSg SINE Alu 1 285 -25 3480 117 48 83 chr12 107390688 107390707 -36891782 - MER4E LTR ERV1 -211 568 550 2225 94 0 0 chr12 107390707 107390993 -36891496 + AluSc SINE Alu 1 286 -23 3480 117 48 83 chr12 107390993 107391413 -36891076 - MER4E LTR ERV1 -229 550 154 2551 175 23 11 chr12 107391408 107391884 -36890605 + MER41B LTR ERV1 100 466 -12 * 4055 155 113 28 chr12 107391926 107392687 -36889802 + LTR1B LTR ERV1 1 826 0 21 0 0 0 chr12 107392719 107392740 -36889749 + AT_rich Low_complexity Low_complexity 1 21 0 282 273 109 0 chr12 107392895 107393005 -36889484 - MIR SINE MIR -100 162 41 1874 109 71 0 chr12 107393162 107393445 -36889044 + AluSx SINE Alu 1 303 -9 2164 170 25 5 chr12 107393623 107394018 -36888471 - MER57A LTR ERV1 0 403 1 1998 83 7 14 chr12 107394026 107394302 -36888187 - AluSx SINE Alu -16 296 23 342 310 49 49 chr12 107394414 107394598 -36887891 - MIR SINE MIR -51 211 28 1991 105 20 7 chr12 107394826 107395132 -36887357 + AluSg SINE Alu 1 310 0 214 207 0 66 chr12 107395318 107395439 -36887050 + (CCCGG)n Simple_repeat Simple_repeat 3 115 0 229 104 0 42 chr12 107396865 107396913 -36885576 + LTR66 LTR ERVL 394 439 -171 * 343 229 0 62 chr12 107396883 107396979 -36885510 - L1MC4 LINE L1 -1339 6703 6614 283 187 0 27 chr12 107396917 107396992 -36885497 + (TA)n Simple_repeat Simple_repeat 2 74 0 * 816 100 33 0 chr12 107396997 107397117 -36885372 - AluSq/x SINE Alu -188 125 2 707 203 68 26 chr12 107397239 107397431 -36885058 - MER105 DNA DNA -3 201 2 225 0 0 0 chr12 107397565 107397590 -36884899 + (TA)n Simple_repeat Simple_repeat 2 26 0 2342 95 7 0 chr12 107397590 107397896 -36884593 - AluSp SINE Alu -5 308 1 701 228 198 8 chr12 107398377 107398614 -36883875 + L2 LINE L2 3029 3310 -3 246 62 0 0 chr12 107399433 107399465 -36883024 + (TG)n Simple_repeat Simple_repeat 2 33 0 1102 177 19 14 chr12 107399695 107399910 -36882579 + MER20 DNA MER1_type 1 216 -3 479 174 7 5 chr12 107400133 107400281 -36882208 - MER20 DNA MER1_type 0 219 3 911 155 0 7 chr12 107400701 107400843 -36881646 + AluJb SINE Alu 1 141 -171 2395 99 3 0 chr12 107401209 107401521 -36880968 + AluSp SINE Alu 1 313 0 191 265 88 44 chr12 107401780 107401848 -36880641 - L2 LINE L2 -16 3256 3186 23 0 0 0 chr12 107401977 107402000 -36880489 + AT_rich Low_complexity Low_complexity 1 23 0 2352 102 0 0 chr12 107402094 107402389 -36880100 - AluSg SINE Alu -15 295 1 1669 250 111 61 chr12 107402452 107402753 -36879736 - L2 LINE L2 -6 3307 3022 2082 134 23 0 chr12 107402753 107403058 -36879431 + AluSx SINE Alu 1 312 0 1669 250 111 61 chr12 107403058 107403688 -36878801 - L2 LINE L2 -291 3022 2327 2163 110 0 39 chr12 107403688 107403997 -36878492 - AluSx SINE Alu -15 297 1 1669 250 111 61 chr12 107403997 107404026 -36878463 - L2 LINE L2 -986 2327 2301 1413 159 127 26 chr12 107404212 107404520 -36877969 - MER44D DNA MER2_type 0 609 1 221 273 57 68 chr12 107404646 107404734 -36877755 - MIR SINE MIR -113 149 63 1992 144 101 39 chr12 107404980 107405047 -36877442 - MSTB2 LTR MaLR 0 432 371 2193 86 4 0 chr12 107405047 107405358 -36877131 - AluY SINE Alu 0 312 1 2094 136 3 3 chr12 107405360 107405655 -36876834 - AluSx SINE Alu -17 295 1 1992 144 101 39 chr12 107405655 107406043 -36876446 - MSTB2 LTR MaLR -61 371 2 2227 94 7 7 chr12 107406228 107406525 -36875964 + AluSx SINE Alu 1 297 -15 53 17 0 0 chr12 107406935 107406995 -36875494 + AT_rich Low_complexity Low_complexity 1 60 0 1512 164 0 0 chr12 107406995 107407220 -36875269 - AluJb SINE Alu -16 296 72 639 39 0 0 chr12 107407280 107407358 -36875131 + (TC)n Simple_repeat Simple_repeat 2 79 0 309 51 0 0 chr12 107407359 107407398 -36875091 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2015 104 31 28 chr12 107407398 107407686 -36874803 - AluSq SINE Alu -24 289 1 2058 112 3 14 chr12 107408060 107408347 -36874142 + AluSx SINE Alu 1 284 -28 401 252 29 19 chr12 107408801 107408904 -36873585 + L2 LINE L2 3209 3312 -1 1567 202 3 3 chr12 107410307 107410589 -36871900 - AluJo SINE Alu -30 282 1 23 33 0 0 chr12 107411693 107411723 -36870766 + AT_rich Low_complexity Low_complexity 1 30 0 215 316 34 51 chr12 107412074 107412191 -36870298 + L2 LINE L2 2936 3050 -222 732 173 16 0 chr12 107412207 107412334 -36870155 - FLAM_C SINE Alu -2 131 3 314 299 78 19 chr12 107412435 107412589 -36869900 + L2 LINE L2 3128 3290 -23 1546 185 11 4 chr12 107412682 107412952 -36869537 - AluJb SINE Alu -40 272 1 2266 94 0 13 chr12 107412963 107413270 -36869219 - AluSx SINE Alu -9 303 1 456 111 0 0 chr12 107413302 107413383 -36869106 + (TA)n Simple_repeat Simple_repeat 1 81 0 1809 148 7 40 chr12 107413386 107413547 -36868942 - AluJo SINE Alu -18 294 146 2097 132 0 10 chr12 107413547 107413857 -36868632 - AluSg SINE Alu -3 307 1 1809 148 7 40 chr12 107413857 107413999 -36868490 - AluJo SINE Alu -166 146 1 1398 183 19 70 chr12 107414021 107414333 -36868156 - AluJo SINE Alu -11 301 6 399 217 98 0 chr12 107414340 107414432 -36868057 - Charlie8 DNA MER1_type -2308 109 9 1294 120 28 81 chr12 107414668 107414952 -36867537 + MER21A LTR ERV1 656 924 -7 554 256 40 11 chr12 107414960 107415136 -36867353 + L2 LINE L2 3126 3306 -7 405 299 211 26 chr12 107415115 107415466 -36867023 - L2 LINE L2 -10 3303 2888 * 421 206 43 0 chr12 107415597 107415689 -36866800 + MER58A DNA MER1_type 1 96 -11 395 261 84 11 chr12 107415894 107416025 -36866464 + MIR3 SINE MIR 31 165 -43 719 195 23 0 chr12 107416200 107416328 -36866161 - FLAM_A SINE Alu -2 131 1 230 157 0 20 chr12 107416348 107416399 -36866090 + (TA)n Simple_repeat Simple_repeat 2 51 0 2736 215 58 62 chr12 107416413 107416479 -36866010 - L1ME1 LINE L1 -5 6161 6096 2213 92 7 0 chr12 107416479 107416771 -36865718 - AluSp SINE Alu -19 294 1 2736 215 58 62 chr12 107416771 107416939 -36865550 - L1ME1 LINE L1 -70 6096 5929 2255 121 0 6 chr12 107416939 107417254 -36865235 - AluSp SINE Alu 0 313 1 2736 215 58 62 chr12 107417254 107417502 -36864987 - L1ME1 LINE L1 -237 5929 5682 195 42 0 0 chr12 107417502 107417526 -36864963 + (TC)n Simple_repeat Simple_repeat 2 25 0 2736 215 58 62 chr12 107417526 107417920 -36864569 - L1ME1 LINE L1 -484 5682 5288 2168 114 13 3 chr12 107417920 107418226 -36864263 - AluSx SINE Alu -3 309 1 2736 215 58 62 chr12 107418226 107419182 -36863307 - L1ME1 LINE L1 -878 5288 4326 183 42 0 0 chr12 107419182 107419206 -36863283 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2151 112 0 3 chr12 107419213 107419499 -36862990 - AluSg SINE Alu -25 285 1 1469 160 71 15 chr12 107419576 107419901 -36862588 - L1MC3 LINE L1 0 7785 7443 270 0 0 0 chr12 107419901 107419931 -36862558 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1027 171 6 6 chr12 107419935 107420099 -36862390 - AluJb SINE Alu -37 275 112 402 156 0 0 chr12 107420120 107420197 -36862292 - L1MC3 LINE L1 -331 7454 7378 25 31 0 0 chr12 107420197 107420229 -36862260 + AT_rich Low_complexity Low_complexity 1 32 0 318 266 25 87 chr12 107420378 107420519 -36861970 + MER5B DNA MER1_type 3 144 -45 1651 122 6 113 chr12 107420519 107420855 -36861634 + AluJo SINE Alu 1 300 -12 318 266 25 87 chr12 107420855 107420874 -36861615 + MER5B DNA MER1_type 144 163 -26 1103 181 136 128 chr12 107420887 107421103 -36861386 - L1MC3 LINE L1 -392 7393 7180 227 237 17 0 chr12 107421103 107421162 -36861327 - MLT1F1 LTR MaLR -456 111 52 1103 181 136 128 chr12 107421162 107421395 -36861094 - L1MC3 LINE L1 -605 7180 6882 * 1826 236 20 27 chr12 107421391 107421841 -36860648 - L1ME1 LINE L1 -1819 4327 3875 1403 187 106 7 chr12 107421841 107422125 -36860364 - AluJo SINE Alu 0 312 1 2105 108 34 10 chr12 107422128 107422425 -36860064 - AluSx SINE Alu -8 304 1 1826 236 20 27 chr12 107422425 107422525 -36859964 - L1ME1 LINE L1 -2273 3873 3777 1751 175 26 3 chr12 107422530 107422833 -36859656 - AluJb SINE Alu -2 310 1 1992 147 3 3 chr12 107422903 107423196 -36859293 - AluSx SINE Alu -19 293 1 744 185 0 0 chr12 107424514 107424644 -36857845 - FLAM_C SINE Alu -3 130 1 556 247 80 0 chr12 107424658 107424808 -36857681 - MIR SINE MIR 0 262 101 1980 101 54 7 chr12 107424848 107425126 -36857363 - AluSx SINE Alu -21 291 1 1852 183 0 0 chr12 107425135 107425430 -36857059 - AluJb SINE Alu -16 296 2 1035 76 0 0 chr12 107425439 107425570 -36856919 - AluSc SINE Alu -8 301 171 180 0 0 0 chr12 107425640 107425660 -36856829 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1576 167 12 85 chr12 107425794 107426123 -36856366 - AluJb SINE Alu -7 305 1 1244 176 130 42 chr12 107426278 107426412 -36856077 + AluJo SINE Alu 1 122 -190 2111 98 0 14 chr12 107426412 107426689 -36855800 + AluSg SINE Alu 1 273 -37 229 26 53 0 chr12 107426693 107426731 -36855758 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1244 176 130 42 chr12 107426731 107426853 -36855636 + AluJo SINE Alu 124 285 -27 967 138 96 12 chr12 107426873 107427040 -36855449 + AluJb SINE Alu 132 312 0 379 317 114 9 chr12 107427087 107427314 -36855175 - L1ME4a LINE L1 -187 5934 5684 414 331 229 31 chr12 107427533 107427826 -36854663 + L2 LINE L2 2915 3265 -7 319 314 83 24 chr12 107428340 107428509 -36853980 + MIR SINE MIR 74 252 -10 2037 139 3 7 chr12 107428535 107428837 -36853652 - AluSx SINE Alu -11 301 1 2595 126 19 17 chr12 107428837 107428948 -36853541 - L1MA3 LINE L1 -120 6185 6076 1484 128 179 40 chr12 107428948 107429105 -36853384 - THE1C LTR MaLR 0 375 241 495 0 0 0 chr12 107429105 107429160 -36853329 + (GA)n Simple_repeat Simple_repeat 1 55 0 1484 128 179 40 chr12 107429160 107429331 -36853158 - THE1C LTR MaLR -134 241 1 2595 126 19 17 chr12 107429331 107429685 -36852804 - L1MA3 LINE L1 -229 6076 5715 21 89 0 0 chr12 107430008 107430064 -36852425 + AT_rich Low_complexity Low_complexity 1 56 0 26 50 0 0 chr12 107430158 107430198 -36852291 + AT_rich Low_complexity Low_complexity 1 40 0 1791 161 0 24 chr12 107430279 107430571 -36851918 + AluJb SINE Alu 2 286 -26 1821 102 0 19 chr12 107430658 107430914 -36851575 - AluSc SINE Alu -6 303 53 200 146 0 21 chr12 107430950 107430998 -36851491 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2136 114 13 10 chr12 107431007 107431313 -36851176 - AluSx SINE Alu -5 307 1 5311 142 16 73 chr12 107431557 107433591 -36848898 - L1PB3 LINE L1 0 6154 4250 2137 142 3 0 chr12 107433816 107434126 -36848363 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr12 107435597 107435619 -36846870 + AT_rich Low_complexity Low_complexity 1 22 0 2175 110 3 10 chr12 107435908 107436209 -36846280 + AluSx SINE Alu 1 299 -13 1872 150 14 0 chr12 107436220 107436507 -36845982 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr12 107436674 107436695 -36845794 + AT_rich Low_complexity Low_complexity 1 21 0 323 267 19 48 chr12 107437430 107437535 -36844954 - MER5A DNA MER1_type -6 183 82 1712 163 4 7 chr12 107437614 107437891 -36844598 - AluJo SINE Alu -36 276 1 1889 149 0 7 chr12 107437995 107438290 -36844199 - AluJb SINE Alu -10 302 10 26 0 0 0 chr12 107438314 107438340 -36844149 + AT_rich Low_complexity Low_complexity 1 26 0 1747 164 23 20 chr12 107438369 107438538 -36843951 - AluJo SINE Alu -7 305 138 255 61 0 0 chr12 107438538 107438571 -36843918 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 1442 207 52 0 chr12 107438571 107438841 -36843648 - AluJo SINE Alu -28 284 1 1747 164 23 20 chr12 107438841 107438974 -36843515 - AluJo SINE Alu -173 139 1 23 54 0 0 chr12 107438984 107439021 -36843468 + AT_rich Low_complexity Low_complexity 1 37 0 2052 120 13 10 chr12 107439028 107439329 -36843160 + AluSx SINE Alu 3 304 -8 351 127 0 0 chr12 107439344 107439407 -36843082 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1825 157 0 24 chr12 107439408 107439701 -36842788 - AluSx SINE Alu -26 286 1 1797 154 0 11 chr12 107440103 107440388 -36842101 - AluJb SINE Alu -30 282 1 1332 219 7 7 chr12 107441211 107441480 -36841009 - AluJb SINE Alu 0 312 44 1948 152 0 7 chr12 107441482 107441784 -36840705 - AluJo SINE Alu -12 300 1 260 326 11 22 chr12 107441957 107442046 -36840443 + L2 LINE L2 3166 3253 -19 2065 111 3 10 chr12 107442054 107442351 -36840138 - AluSx SINE Alu -17 295 1 22 0 0 0 chr12 107443268 107443290 -36839199 + AT_rich Low_complexity Low_complexity 1 22 0 1746 158 14 10 chr12 107443455 107443746 -36838743 - AluSx SINE Alu -20 292 1 1295 224 54 24 chr12 107443914 107444209 -36838280 + AluJb SINE Alu 5 308 -4 542 296 28 32 chr12 107444556 107444803 -36837686 + Charlie2 DNA MER1_type 78 323 -2539 998 214 66 14 chr12 107444814 107445103 -36837386 + Charlie2 DNA MER1_type 1898 2201 -661 1867 138 0 11 chr12 107446235 107446511 -36835978 + AluSx SINE Alu 24 296 -16 2353 83 0 10 chr12 107446516 107446828 -36835661 + AluY SINE Alu 1 309 -2 2291 89 7 7 chr12 107446833 107447137 -36835352 + AluSg SINE Alu 1 304 -6 1062 136 65 0 chr12 107447137 107447291 -36835198 + AluSg/x SINE Alu 134 297 -15 1781 134 51 43 chr12 107448189 107448539 -36833950 - THE1A LTR MaLR -2 353 1 21 36 0 0 chr12 107448577 107448605 -36833884 + AT_rich Low_complexity Low_complexity 1 28 0 2220 104 0 3 chr12 107448734 107449031 -36833458 - AluSx SINE Alu -3 309 14 205 270 22 67 chr12 107450054 107450075 -36832414 - L2 LINE L2 -516 2798 2782 250 253 74 42 chr12 107450075 107450170 -36832319 - MER5A DNA MER1_type -3 186 89 900 223 131 23 chr12 107450602 107450907 -36831582 + MER46C DNA MER2_type 1 338 0 229 103 0 51 chr12 107451079 107451118 -36831371 + MIR SINE MIR 74 110 -152 2488 70 0 0 chr12 107451140 107451442 -36831047 - AluSg SINE Alu -8 302 1 819 203 69 51 chr12 107451489 107451706 -36830783 + MIR SINE MIR 41 261 -1 292 324 95 9 chr12 107451709 107451814 -36830675 + L2 LINE L2 3155 3268 -4 32 43 0 0 chr12 107452372 107452418 -36830071 + AT_rich Low_complexity Low_complexity 1 46 0 443 167 176 46 chr12 107452989 107453097 -36829392 - AluJ SINE Alu -61 251 130 432 0 0 0 chr12 107453894 107453942 -36828547 + (TG)n Simple_repeat Simple_repeat 1 48 0 761 136 0 50 chr12 107453971 107454111 -36828378 - AluJ SINE Alu -169 133 1 2230 114 0 0 chr12 107454116 107454414 -36828075 - AluSx SINE Alu -14 298 1 341 88 0 18 chr12 107454553 107454610 -36827879 - L1MA5 LINE L1 0 6300 6245 1122 156 92 36 chr12 107454650 107454935 -36827554 - L1MA5 LINE L1 -47 6253 5935 5650 159 25 3 chr12 107455537 107456914 -36825575 + L1PA15 LINE L1 4761 6165 0 446 264 69 15 chr12 107456920 107457085 -36825404 - MER77 LTR ERV1 -4 601 415 2352 105 5 72 chr12 107457099 107457489 -36825000 - THE1B LTR MaLR 0 364 1 10944 84 7 69 chr12 107457489 107457873 -36824616 - THE1B-int LTR MaLR 0 1580 1174 722 92 0 0 chr12 107457873 107457971 -36824518 + AluY SINE Alu 205 302 -9 10944 84 7 69 chr12 107457971 107459174 -36823315 - THE1B-int LTR MaLR -406 1174 1 2323 124 11 27 chr12 107459174 107459544 -36822945 - THE1B LTR MaLR 0 364 1 2246 151 63 19 chr12 107459854 107460264 -36822225 - MSTA LTR MaLR 0 428 1 1096 192 23 19 chr12 107460661 107460875 -36821614 + MER20 DNA MER1_type 1 215 -4 1178 143 52 94 chr12 107460947 107461234 -36821255 - MER7A DNA MER2_type -71 275 3 2078 141 0 3 chr12 107461627 107461932 -36820557 + AluSx SINE Alu 1 304 -8 1420 165 11 8 chr12 107462194 107462455 -36820034 - L1PA16 LINE L1 0 6166 5905 5326 178 107 23 chr12 107462455 107463011 -36819478 - L1P4 LINE L1 -653 5513 5005 2496 68 0 0 chr12 107463011 107463305 -36819184 + AluSg SINE Alu 1 294 -16 5326 178 107 23 chr12 107463305 107463710 -36818779 - L1P4 LINE L1 -1161 5005 4636 2057 136 17 0 chr12 107463710 107464004 -36818485 - AluSx SINE Alu -13 299 1 5326 178 107 23 chr12 107464004 107464053 -36818436 - L1P4 LINE L1 -1530 4636 4593 240 35 0 0 chr12 107464053 107464082 -36818407 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5326 178 107 23 chr12 107464082 107464605 -36817884 - L1P4 LINE L1 -1573 4593 3834 26 0 0 0 chr12 107464668 107464694 -36817795 + AT_rich Low_complexity Low_complexity 1 26 0 189 107 0 0 chr12 107464728 107464756 -36817733 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 448 18 18 0 chr12 107464759 107464814 -36817675 - MADE1 DNA Mariner -24 56 1 1001 113 0 0 chr12 107464821 107464954 -36817535 + AluSq/x SINE Alu 1 133 -180 424 224 24 0 chr12 107464989 107465074 -36817415 - L1MB4 LINE L1 -70 6110 6024 768 177 0 0 chr12 107465772 107465896 -36816593 - FLAM_C SINE Alu -9 124 1 2156 124 0 10 chr12 107466027 107466341 -36816148 - AluSx SINE Alu 0 312 2 1992 155 0 0 chr12 107466802 107467106 -36815383 - AluSx SINE Alu -8 304 1 22 35 0 0 chr12 107467284 107467313 -36815176 + AT_rich Low_complexity Low_complexity 1 29 0 1616 153 45 42 chr12 107467317 107467605 -36814884 - AluSx SINE Alu -19 293 5 1757 113 113 0 chr12 107467764 107468030 -36814459 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr12 107468030 107468052 -36814437 + AT_rich Low_complexity Low_complexity 1 22 0 222 299 67 67 chr12 107468164 107468298 -36814191 - MIR SINE MIR -127 135 2 37 23 0 0 chr12 107468410 107468454 -36814035 + AT_rich Low_complexity Low_complexity 1 44 0 2647 93 3 3 chr12 107468454 107468829 -36813660 - L1PB1 LINE L1 -1 6150 5776 245 188 0 0 chr12 107468835 107468883 -36813606 - L1MC4 LINE L1 -1343 6699 6652 3880 169 18 35 chr12 107468911 107469096 -36813393 - L1P5 LINE L1 -369 6498 6311 1615 164 89 0 chr12 107469096 107469365 -36813124 - AluSg SINE Alu -17 293 1 3880 169 18 35 chr12 107469365 107470595 -36811894 - L1P5 LINE L1 -556 6311 5108 5752 205 10 11 chr12 107470595 107471504 -36810985 - L1 LINE L1 -2619 4243 3335 2277 82 0 36 chr12 107471504 107471809 -36810680 - AluY SINE Alu -17 294 1 5752 205 10 11 chr12 107471809 107472214 -36810275 - L1 LINE L1 -3527 3335 2931 4493 73 14 36 chr12 107472218 107473282 -36809207 - MER11A LTR ERVK 0 1266 1 8265 135 46 9 chr12 107473282 107474585 -36807904 - L1P5 LINE L1 -3935 2928 1562 2328 103 6 0 chr12 107474585 107474896 -36807593 - AluSp SINE Alu 0 313 1 8265 135 46 9 chr12 107474896 107475074 -36807415 - L1P5 LINE L1 -5301 1562 1392 844 240 10 10 chr12 107475053 107475261 -36807228 - L1P5 LINE L1 -6649 214 7 * 1702 184 13 10 chr12 107475331 107475641 -36806848 - AluJo SINE Alu -1 311 1 1938 159 50 19 chr12 107476076 107476454 -36806035 - MLT1B LTR MaLR 0 390 1 2643 36 3 0 chr12 107476640 107476944 -36805545 - AluY SINE Alu -6 305 1 200 139 0 28 chr12 107477352 107477388 -36805101 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 24 100 0 0 chr12 107477996 107478076 -36804413 + AT_rich Low_complexity Low_complexity 1 80 0 22 0 0 0 chr12 107480312 107480334 -36802155 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr12 107480898 107480952 -36801537 + AT_rich Low_complexity Low_complexity 1 54 0 1970 140 40 0 chr12 107481465 107481765 -36800724 - AluSx SINE Alu 0 312 1 22 80 0 0 chr12 107481838 107481888 -36800601 + AT_rich Low_complexity Low_complexity 1 50 0 747 41 51 0 chr12 107481932 107482030 -36800459 - MSTD LTR MaLR -7 389 287 585 245 94 13 chr12 107482073 107482232 -36800257 - MSTD LTR MaLR -193 172 1 432 259 164 17 chr12 107482280 107482475 -36800014 - MIR SINE MIR 0 262 42 470 222 34 26 chr12 107482491 107482608 -36799881 - MIR SINE MIR -88 174 57 2162 138 0 0 chr12 107482621 107482926 -36799563 - AluSq SINE Alu -8 305 1 851 230 90 5 chr12 107482952 107483152 -36799337 - MIR SINE MIR -26 236 20 555 294 67 47 chr12 107483295 107483550 -36798939 - MIR SINE MIR 0 262 3 23 33 0 0 chr12 107483838 107483868 -36798621 + AT_rich Low_complexity Low_complexity 1 30 0 490 266 151 34 chr12 107483869 107484339 -36798150 - L1ME4a LINE L1 -15 6106 5582 301 217 24 12 chr12 107484604 107484687 -36797802 - L1ME4a LINE L1 -92 6029 5946 259 301 0 0 chr12 107484702 107484788 -36797701 + (TATATG)n Simple_repeat Simple_repeat 1 86 0 2191 107 0 10 chr12 107484908 107485198 -36797291 - AluSx SINE Alu -25 287 1 2384 94 0 0 chr12 107485228 107485537 -36796952 + AluY SINE Alu 1 309 -2 190 397 30 15 chr12 107485551 107485682 -36796807 + L2 LINE L2 2704 2836 -478 28 0 0 0 chr12 107485815 107485843 -36796646 + AT_rich Low_complexity Low_complexity 1 28 0 1941 113 80 0 chr12 107485978 107486252 -36796237 + AluSx SINE Alu 1 296 -16 1731 150 46 4 chr12 107486265 107486545 -36795944 - AluJb SINE Alu -18 294 3 278 299 46 11 chr12 107486679 107486766 -36795723 - L2 LINE L2 -3 3310 3221 * 588 193 58 35 chr12 107486745 107486916 -36795573 + MER5C DNA MER1_type 150 324 0 1334 161 9 5 chr12 107487481 107487704 -36794785 - AluJo SINE Alu -2 310 87 21 0 0 0 chr12 107488158 107488179 -36794310 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr12 107488630 107488677 -36793812 + AT_rich Low_complexity Low_complexity 1 47 0 363 23 0 0 chr12 107489509 107489553 -36792936 + (CA)n Simple_repeat Simple_repeat 2 45 0 255 31 0 0 chr12 107489553 107489585 -36792904 + (TC)n Simple_repeat Simple_repeat 1 32 0 28 48 0 0 chr12 107490363 107490405 -36792084 + AT_rich Low_complexity Low_complexity 1 42 0 2113 128 0 3 chr12 107490808 107491105 -36791384 - AluSq SINE Alu -17 296 1 9613 70 19 0 chr12 107491582 107493643 -36788846 - L1PA6 LINE L1 0 6154 4069 210 37 0 0 chr12 107494214 107494241 -36788248 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 470 252 56 7 chr12 107494894 107495037 -36787452 + L1M4 LINE L1 4806 4955 -1191 1671 142 135 34 chr12 107495047 107495222 -36787267 - Tigger1 DNA MER2_type 0 2418 2262 2111 129 3 0 chr12 107495222 107495517 -36786972 + AluSx SINE Alu 1 296 -16 1671 142 135 34 chr12 107495517 107495666 -36786823 - Tigger1 DNA MER2_type -156 2262 2061 494 237 14 7 chr12 107495667 107495806 -36786683 - L1M4 LINE L1 -1011 5135 4996 4618 208 52 49 chr12 107495844 107496586 -36785903 - L1M4 LINE L1 -1310 4836 4087 2511 72 0 0 chr12 107496586 107496891 -36785598 + AluSc SINE Alu 1 305 -4 4618 208 52 49 chr12 107496891 107497599 -36784890 - L1M4 LINE L1 -2059 4087 3382 2016 102 17 31 chr12 107497605 107497921 -36784568 - AluSx SINE Alu 0 312 1 818 162 7 0 chr12 107497933 107498069 -36784420 - FLAM_C SINE Alu -3 140 4 321 277 108 0 chr12 107498071 107498219 -36784270 - L1M4 LINE L1 -2758 3388 3225 292 244 12 35 chr12 107498802 107498888 -36783601 - L2 LINE L2 -1 3271 3188 304 310 134 45 chr12 107499654 107499689 -36782800 - L2 LINE L2 -981 2333 2303 2406 89 0 0 chr12 107499689 107499982 -36782507 + AluSp SINE Alu 5 297 -16 304 310 134 45 chr12 107499982 107500304 -36782185 - L2 LINE L2 -1011 2303 1944 281 233 39 58 chr12 107500357 107500460 -36782029 - L1ME LINE L1 -491 5630 5530 24 77 0 0 chr12 107501146 107501198 -36781291 + AT_rich Low_complexity Low_complexity 1 52 0 26 50 0 0 chr12 107501500 107501540 -36780949 + AT_rich Low_complexity Low_complexity 1 40 0 180 293 0 0 chr12 107502187 107502228 -36780261 - L2 LINE L2 -43 3270 3230 2281 116 0 3 chr12 107502486 107502797 -36779692 - AluSq SINE Alu -3 310 1 4019 133 43 59 chr12 107503529 107504379 -36778110 - L1MA8 LINE L1 -5 6286 5450 2165 120 13 0 chr12 107504490 107504789 -36777700 + AluSx SINE Alu 1 303 -9 570 301 121 11 chr12 107504997 107505269 -36777220 + L2 LINE L2 2400 2701 -613 808 319 14 77 chr12 107505616 107505980 -36776509 + L2 LINE L2 2931 3271 -1 1532 170 96 0 chr12 107506576 107506846 -36775643 - AluJo SINE Alu -16 296 1 2090 120 7 17 chr12 107506858 107507159 -36775330 - AluSx SINE Alu -14 298 1 2386 102 0 0 chr12 107507914 107508219 -36774270 + AluSx SINE Alu 1 305 -7 2143 121 3 7 chr12 107508232 107508529 -36773960 + AluSx SINE Alu 1 296 -16 2142 110 7 7 chr12 107508613 107508913 -36773576 + AluSx SINE Alu 3 302 -10 1749 149 22 4 chr12 107509091 107509360 -36773129 + AluJo SINE Alu 9 282 -30 219 69 0 0 chr12 107509365 107509394 -36773095 + (CAA)n Simple_repeat Simple_repeat 2 30 0 448 313 65 26 chr12 107510204 107510434 -36772055 + MER8 DNA MER2_type 1 239 0 638 289 226 15 chr12 107510484 107510886 -36771603 - L3 LINE CR1 0 1577 1091 471 275 199 20 chr12 107510896 107511252 -36771237 - MLT1L LTR MaLR -6 609 190 2159 115 3 0 chr12 107511275 107511571 -36770918 + AluSp SINE Alu 1 297 -16 5773 104 51 106 chr12 107511734 107512133 -36770356 + Tigger3b DNA MER2_type 14 433 -2595 1893 158 3 10 chr12 107512133 107512430 -36770059 - AluJb SINE Alu -17 295 1 5773 104 51 106 chr12 107512430 107513317 -36769172 + Tigger3b DNA MER2_type 433 1230 -1 480 370 144 17 chr12 107513366 107513658 -36768831 - L2 LINE L2 -3 3269 2941 226 335 91 37 chr12 107513689 107513931 -36768558 - L3 LINE CR1 -535 1042 788 842 189 61 17 chr12 107513946 107514126 -36768363 - MER58A DNA MER1_type 0 224 37 4957 80 30 45 chr12 107514381 107514579 -36767910 - L1PB1 LINE L1 -1 6866 6667 2144 94 3 17 chr12 107514579 107514867 -36767622 - AluSp SINE Alu -29 284 1 4957 80 30 45 chr12 107514867 107515159 -36767330 - L1PB1 LINE L1 -200 6667 6372 2183 119 3 3 chr12 107515159 107515454 -36767035 - AluSq SINE Alu -18 295 1 4957 80 30 45 chr12 107515454 107515771 -36766718 - L1PB1 LINE L1 -495 6372 6070 1983 203 0 4 chr12 107515766 107516238 -36766251 - L1PB1 LINE L1 -1024 5838 5369 * 1630 153 66 3 chr12 107516251 107516571 -36765918 - L1PB1 LINE L1 -6521 342 3 2312 77 0 3 chr12 107516938 107517246 -36765243 - AluY SINE Alu 0 307 1 26 0 0 0 chr12 107517246 107517272 -36765217 + AT_rich Low_complexity Low_complexity 1 26 0 689 178 33 33 chr12 107517280 107517432 -36765057 - FRAM SINE Alu -25 151 1 2046 200 65 77 chr12 107517435 107518069 -36764420 - MLT1E2 LTR MaLR 0 626 1 670 279 16 4 chr12 107518261 107518512 -36763977 - L1ME4a LINE L1 -237 5884 5631 3028 86 64 7 chr12 107518839 107519279 -36763210 + MER4C LTR ERV1 1 465 0 2224 132 0 0 chr12 107519497 107519808 -36762681 - AluSx SINE Alu -1 311 1 242 219 47 0 chr12 107519866 107519930 -36762559 + MLT1J LTR MaLR 13 79 -432 301 287 11 11 chr12 107519940 107520034 -36762455 - L1MC4 LINE L1 -1335 6707 6614 225 236 28 0 chr12 107520034 107520106 -36762383 + (TA)n Simple_repeat Simple_repeat 2 75 0 391 286 171 0 chr12 107520106 107520246 -36762243 + MLT1J LTR MaLR 98 261 -250 1315 211 84 166 chr12 107520273 107521079 -36761410 - L2 LINE L2 -1262 2052 1313 2132 129 7 7 chr12 107521082 107521385 -36761104 + AluSx SINE Alu 1 303 -9 357 330 0 0 chr12 107521385 107521488 -36761001 - L2 LINE L2 -2087 1227 1125 183 42 0 0 chr12 107521491 107521515 -36760974 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 852 9 0 44 chr12 107521518 107521632 -36760857 - L1PA5 LINE L1 -13 6141 6033 1237 120 102 4 chr12 107522050 107522324 -36760165 + AluY SINE Alu 1 301 0 2032 224 105 17 chr12 107522995 107523536 -36758953 + MLT1E LTR MaLR 2 590 -3 206 262 250 70 chr12 107524654 107524826 -36757663 - MIR SINE MIR -14 248 46 1935 161 0 0 chr12 107524864 107525155 -36757334 - AluJb SINE Alu -21 291 1 305 321 0 12 chr12 107525248 107525329 -36757160 - L2 LINE L2 -7 3265 3186 2108 89 0 7 chr12 107525361 107525632 -36756857 + AluSg1 SINE Alu 25 293 -16 460 330 71 5 chr12 107525890 107526087 -36756402 + MIR SINE MIR 53 262 0 21 0 0 0 chr12 107527512 107527533 -36754956 + AT_rich Low_complexity Low_complexity 1 21 0 483 213 11 0 chr12 107527955 107528049 -36754440 - AluJo SINE Alu -32 280 186 885 148 20 7 chr12 107528051 107528200 -36754289 - AluJo SINE Alu -161 151 1 263 325 50 0 chr12 107528398 107528478 -36754011 - MIR SINE MIR -87 121 38 220 300 50 57 chr12 107529735 107529875 -36752614 - MIR SINE MIR -56 206 68 2434 62 0 13 chr12 107530099 107530406 -36752083 - AluY SINE Alu -8 303 1 805 179 0 28 chr12 107530408 107530553 -36751936 - FLAM_C SINE Alu -2 141 1 1717 155 37 0 chr12 107530645 107530916 -36751573 + AluJb SINE Alu 17 297 -15 2072 128 20 0 chr12 107531022 107531319 -36751170 - AluSq SINE Alu -4 309 7 236 271 0 17 chr12 107531325 107531384 -36751105 - MIR3 SINE MIR -14 194 137 593 249 81 45 chr12 107532496 107532805 -36749684 + HERV16 LTR ERVL 1596 1915 -3081 1712 161 0 66 chr12 107533354 107533658 -36748831 + AluSx SINE Alu 1 284 -28 2280 86 3 3 chr12 107533659 107533960 -36748529 + AluSx SINE Alu 1 301 -11 2011 169 11 3 chr12 107534599 107534954 -36747535 + L1MC1 LINE L1 5951 6308 -25 29 47 0 0 chr12 107535214 107535257 -36747232 + AT_rich Low_complexity Low_complexity 1 43 0 227 59 0 0 chr12 107535694 107535728 -36746761 - L1MB7 LINE L1 -18 6166 6133 1563 159 4 16 chr12 107535728 107535979 -36746510 - AluSx SINE Alu -22 290 43 528 176 10 0 chr12 107536002 107536104 -36746385 - L1MB7 LINE L1 -43 6141 6039 2286 112 0 0 chr12 107537157 107537452 -36745037 + AluSx SINE Alu 1 295 -17 1794 151 20 10 chr12 107537778 107538070 -36744419 + AluJo SINE Alu 1 295 -17 1755 103 27 30 chr12 107538075 107538337 -36744152 + AluSg SINE Alu 1 261 -49 278 209 0 7 chr12 107538350 107538435 -36744054 + L1ME LINE L1 5747 5824 -297 700 157 43 0 chr12 107538676 107538816 -36743673 - L1MB7 LINE L1 -50 6134 5989 211 136 23 0 chr12 107538825 107538869 -36743620 + (TTAAA)n Simple_repeat Simple_repeat 1 45 0 426 275 239 0 chr12 107539323 107539461 -36743028 + MER5A DNA MER1_type 13 183 -6 215 269 0 0 chr12 107539948 107540000 -36742489 + C-rich Low_complexity Low_complexity 3 54 0 25 0 0 0 chr12 107541197 107541222 -36741267 + AT_rich Low_complexity Low_complexity 1 25 0 741 312 162 27 chr12 107541547 107542150 -36740339 + L2 LINE L2 2382 3055 -217 405 311 71 27 chr12 107542282 107542507 -36739982 - MIR SINE MIR -13 249 15 424 345 23 23 chr12 107542517 107542688 -36739801 - MER5B DNA MER1_type -7 171 1 2436 53 0 3 chr12 107542749 107543048 -36739441 - AluY SINE Alu -13 298 1 1015 71 0 50 chr12 107543386 107543527 -36738962 - FLAM_C SINE Alu 0 143 10 214 357 60 0 chr12 107543590 107543674 -36738815 + L2 LINE L2 3212 3300 -13 189 0 0 0 chr12 107544022 107544043 -36738446 + (A)n Simple_repeat Simple_repeat 1 21 0 325 321 142 30 chr12 107545181 107545449 -36737040 + L2 LINE L2 2135 2432 -882 200 211 0 53 chr12 107545492 107545549 -36736940 + T-rich Low_complexity Low_complexity 5 58 0 184 382 0 15 chr12 107546220 107546288 -36736201 + L2 LINE L2 3190 3256 -16 515 162 44 44 chr12 107546980 107547116 -36735373 - Charlie2b DNA MER1_type 0 2782 2647 265 286 12 12 chr12 107547272 107547356 -36735133 - Charlie2b DNA MER1_type -2131 651 568 650 239 32 11 chr12 107547395 107547583 -36734906 - Charlie2b DNA MER1_type -2503 279 88 377 222 0 12 chr12 107547583 107547664 -36734825 - Charlie4 DNA MER1_type -1 1960 1881 2783 243 73 17 chr12 107547665 107547957 -36734532 - L1MEc LINE L1 -1502 4713 4439 1729 194 27 7 chr12 107547957 107548256 -36734233 - AluJo SINE Alu -7 305 1 2783 243 73 17 chr12 107548256 107548999 -36733490 - L1MEc LINE L1 -1776 4439 3620 2627 215 94 42 chr12 107549044 107549079 -36733410 - L1MEc LINE L1 -2852 3363 3331 1653 210 0 22 chr12 107549079 107549398 -36733091 - AluJb SINE Alu 0 312 1 2627 215 94 42 chr12 107549398 107550910 -36731579 - L1MEc LINE L1 -2884 3331 1801 1496 175 0 0 chr12 107550948 107551212 -36731277 - AluJb SINE Alu 0 312 49 442 264 48 38 chr12 107551234 107551388 -36731101 - L1MEc LINE L1 -4728 1668 1517 2365 97 0 0 chr12 107551388 107551688 -36730801 - AluSc SINE Alu -9 300 1 442 264 48 38 chr12 107551688 107551847 -36730642 - L1MEc LINE L1 -4879 1517 1352 2115 142 3 23 chr12 107551860 107552204 -36730285 - MER1B DNA MER1_type 0 337 1 593 326 77 37 chr12 107552207 107552986 -36729503 - L1MEc LINE L1 -5543 853 44 356 291 0 0 chr12 107553203 107553282 -36729207 - Charlie2b DNA MER1_type -2777 85 7 1216 150 53 13 chr12 107553396 107553623 -36728866 + MER46A DNA MER2_type 1 236 0 1870 150 7 0 chr12 107553780 107554073 -36728416 - AluJb SINE Alu -1 311 17 805 179 0 28 chr12 107554165 107554310 -36728179 + FLAM_C SINE Alu 1 141 -2 2442 60 3 3 chr12 107554312 107554614 -36727875 + AluY SINE Alu 1 302 -9 1450 179 0 28 chr12 107554772 107555047 -36727442 - AluSx SINE Alu 0 305 38 2165 120 3 0 chr12 107555079 107555379 -36727110 - AluSx SINE Alu -7 305 5 258 27 27 0 chr12 107556326 107556363 -36726126 - AluSx SINE Alu -263 38 1 1735 106 0 0 chr12 107557294 107557521 -36724968 - AluSx SINE Alu -85 227 1 696 195 16 0 chr12 107557648 107557771 -36724718 + FLAM_C SINE Alu 1 125 -8 27 29 0 0 chr12 107557783 107557817 -36724672 + AT_rich Low_complexity Low_complexity 1 34 0 934 204 161 22 chr12 107557833 107558368 -36724121 - L1ME3A LINE L1 -31 6139 5436 41 36 0 0 chr12 107559531 107559586 -36722903 + AT_rich Low_complexity Low_complexity 1 55 0 23 54 0 0 chr12 107559698 107559735 -36722754 + AT_rich Low_complexity Low_complexity 1 37 0 237 33 0 0 chr12 107560027 107560057 -36722432 + (TTG)n Simple_repeat Simple_repeat 2 31 0 979 168 19 0 chr12 107560061 107560216 -36722273 - FAM SINE Alu -17 158 1 28 61 0 0 chr12 107560548 107560597 -36721892 + AT_rich Low_complexity Low_complexity 1 49 0 702 233 0 0 chr12 107561073 107561206 -36721283 - FLAM_C SINE Alu 0 133 1 2119 132 3 7 chr12 107561312 107561615 -36720874 + AluJo SINE Alu 1 302 -10 441 190 121 35 chr12 107561648 107561764 -36720725 - FLAM_C SINE Alu -7 126 1 408 259 129 0 chr12 107562142 107562281 -36720208 + MIR SINE MIR 88 244 -18 188 300 85 39 chr12 107562811 107562941 -36719548 - MIR SINE MIR -5 257 122 204 163 20 20 chr12 107563312 107563361 -36719128 + (AATAG)n Simple_repeat Simple_repeat 4 52 0 249 232 43 14 chr12 107565375 107565444 -36717045 - MIR SINE MIR -21 241 171 189 304 36 0 chr12 107565477 107565533 -36716956 - MIR SINE MIR -186 76 19 1434 146 82 78 chr12 107565593 107565874 -36716615 - AluJo SINE Alu -30 282 1 566 230 0 22 chr12 107565879 107566014 -36716475 - FLAM_A SINE Alu -1 132 1 6467 72 13 68 chr12 107566289 107568713 -36713776 - SVA Other Other -518 1383 1 293 0 0 26 chr12 107568719 107568757 -36713732 + (GGGAGA)n Simple_repeat Simple_repeat 1 37 0 215 322 43 0 chr12 107568843 107568958 -36713531 + L2 LINE L2 3150 3269 -3 542 333 65 0 chr12 107570147 107570348 -36712141 - MIR SINE MIR -44 218 5 22 0 0 0 chr12 107571302 107571324 -36711165 + AT_rich Low_complexity Low_complexity 1 22 0 2135 75 6 103 chr12 107571506 107571837 -36710652 - AluSq SINE Alu -14 299 1 1925 149 0 17 chr12 107571913 107572215 -36710274 + AluJo SINE Alu 11 307 -5 3101 226 40 29 chr12 107572302 107573272 -36709217 - L1ME1 LINE L1 -5 6161 5170 6585 113 15 7 chr12 107573312 107574537 -36707952 - L1MA2 LINE L1 0 6304 5069 494 252 0 0 chr12 107574532 107574651 -36707838 - L1ME1 LINE L1 -3459 2687 2569 * 3352 172 33 21 chr12 107574647 107575316 -36707173 - L1M1 LINE L1 -6368 1197 521 * 11240 106 10 31 chr12 107575313 107577555 -36704934 - L1PA7 LINE L1 -4098 2363 125 * 21926 81 11 4 chr12 107577539 107581604 -36700885 + L1PA7 LINE L1 2385 6469 0 1977 193 51 60 chr12 107581617 107582060 -36700429 - L1M1 LINE L1 -7029 536 97 294 95 0 0 chr12 107582060 107582102 -36700387 + (TG)n Simple_repeat Simple_repeat 1 42 0 1977 193 51 60 chr12 107582102 107582187 -36700302 - L1M1 LINE L1 -7468 97 13 * 3469 122 28 141 chr12 107582186 107582940 -36699549 - L1MB3 LINE L1 -40 6143 5509 2022 139 3 0 chr12 107582940 107583249 -36699240 - AluSg SINE Alu 0 310 1 3469 122 28 141 chr12 107583249 107583411 -36699078 - L1MB3 LINE L1 -674 5509 5330 522 293 101 0 chr12 107584519 107584717 -36697772 - MIR SINE MIR -38 224 7 32 26 0 0 chr12 107585737 107585776 -36696713 + AT_rich Low_complexity Low_complexity 1 39 0 1849 126 0 40 chr12 107585789 107586090 -36696399 + AluJo SINE Alu 1 289 -23 2157 122 10 0 chr12 107586834 107587129 -36695360 - AluSx SINE Alu -12 300 3 183 321 36 36 chr12 107588024 107588136 -36694353 - L2 LINE L2 -5 3308 3197 436 271 8 0 chr12 107588281 107588410 -36694079 - MER94 DNA DNA 0 134 5 30 0 0 0 chr12 107588465 107588495 -36693994 + AT_rich Low_complexity Low_complexity 1 30 0 225 274 69 56 chr12 107589258 107589397 -36693092 + MIR SINE MIR 18 162 -46 1886 136 26 20 chr12 107589773 107590075 -36692414 + AluJb SINE Alu 1 304 -8 706 203 8 0 chr12 107590216 107590339 -36692150 - FLAM_A SINE Alu -9 124 1 2279 109 0 3 chr12 107591274 107591585 -36690904 - AluSx SINE Alu -2 310 1 1256 107 0 17 chr12 107592515 107592693 -36689796 - AluSg/x SINE Alu -53 259 85 2256 73 0 11 chr12 107593217 107593551 -36688938 + AluSx SINE Alu 1 331 0 24 0 0 0 chr12 107593852 107593876 -36688613 + AT_rich Low_complexity Low_complexity 1 24 0 722 138 15 164 chr12 107593876 107594071 -36688418 - AluJb SINE Alu -25 287 122 270 178 148 10 chr12 107594568 107594669 -36687820 - L1ME4a LINE L1 -42 6079 5965 1756 144 33 36 chr12 107594720 107595025 -36687464 + AluJo SINE Alu 6 309 -3 2687 19 0 3 chr12 107595045 107595353 -36687136 + AluY SINE Alu 1 307 -4 1946 154 0 44 chr12 107595429 107595575 -36686914 + AluJo SINE Alu 1 152 -160 1917 112 0 4 chr12 107595575 107595833 -36686656 + AluSq SINE Alu 45 301 -12 1946 154 0 44 chr12 107595833 107596004 -36686485 + AluJo SINE Alu 152 304 -8 220 300 50 57 chr12 107596228 107596368 -36686121 + MIR SINE MIR 68 206 -56 263 325 50 0 chr12 107597625 107597705 -36684784 + MIR SINE MIR 38 121 -87 483 173 16 5 chr12 107597903 107598148 -36684341 + AluJo SINE Alu 1 280 -32 21 0 0 0 chr12 107598572 107598593 -36683896 + AT_rich Low_complexity Low_complexity 1 21 0 460 330 71 5 chr12 107600018 107600215 -36682274 - MIR SINE MIR 0 262 53 2109 89 0 7 chr12 107600473 107600744 -36681745 - AluSg1 SINE Alu -16 293 25 305 321 0 12 chr12 107600776 107600857 -36681632 + L2 LINE L2 3186 3265 -7 1922 161 0 0 chr12 107600950 107601241 -36681248 + AluJb SINE Alu 1 291 -21 223 283 225 52 chr12 107601279 107601452 -36681037 + MIR SINE MIR 46 248 -14 2259 224 105 17 chr12 107602570 107603111 -36679378 - MLT1E LTR MaLR -3 590 2 2108 132 10 0 chr12 107603776 107604080 -36678409 - AluSx SINE Alu -5 307 1 1834 134 4 4 chr12 107604293 107604562 -36677927 + AluJb SINE Alu 14 282 -30 3086 183 39 0 chr12 107604901 107605436 -36677053 - MER68 LTR ERV1 -6 556 1 641 245 52 52 chr12 107605436 107605669 -36676820 + L1ME3A LINE L1 5831 6063 -107 1899 132 0 14 chr12 107605682 107605970 -36676519 - AluJb SINE Alu -17 295 12 354 146 77 131 chr12 107605982 107606112 -36676377 + L1ME3A LINE L1 6043 6165 -5 626 260 67 24 chr12 107606222 107606430 -36676059 + MIR SINE MIR 2 218 -44 893 229 5 0 chr12 107609392 107609580 -36672909 - L1MC4 LINE L1 -469 7573 7385 21 0 0 0 chr12 107610114 107610135 -36672354 + AT_rich Low_complexity Low_complexity 1 21 0 266 291 105 12 chr12 107610897 107610983 -36671506 - L2 LINE L2 -32 3281 3188 1469 165 99 13 chr12 107611068 107611371 -36671118 - MER58D DNA MER1_type -51 335 7 462 217 152 0 chr12 107614796 107614934 -36667555 + MER112 DNA MER1_type 1 159 -101 2381 84 0 3 chr12 107614996 107615295 -36667194 + AluSc SINE Alu 1 298 -11 5933 47 16 0 chr12 107615707 107616394 -36666095 + L1PA5 LINE L1 5457 6154 0 882 195 142 19 chr12 107616509 107616566 -36665923 - MER33 DNA MER1_type -2289 296 247 1809 130 3 60 chr12 107616566 107616881 -36665608 - AluSx SINE Alu -15 297 1 882 195 142 19 chr12 107616881 107616911 -36665578 - MER33 DNA MER1_type -2338 247 222 1912 150 24 3 chr12 107616911 107617198 -36665291 + AluJb SINE Alu 2 294 -18 882 195 142 19 chr12 107617198 107617378 -36665111 - MER33 DNA MER1_type -2363 222 1 634 122 24 98 chr12 107617379 107617502 -36664987 + AluSp SINE Alu 3 116 -197 1624 105 31 4 chr12 107617534 107617762 -36664727 + AluSg SINE Alu 56 289 -21 378 208 58 68 chr12 107618271 107618457 -36664032 + LTR41 LTR ERVL 577 793 -2 2006 123 0 85 chr12 107619014 107619355 -36663134 - AluJb SINE Alu 0 312 1 2000 106 16 55 chr12 107619900 107620211 -36662278 - AluSx SINE Alu -13 299 1 335 270 139 0 chr12 107620517 107620632 -36661857 + MIR SINE MIR 122 252 -10 2092 116 7 13 chr12 107620702 107621003 -36661486 + AluSx SINE Alu 1 299 -13 252 333 54 9 chr12 107621068 107621179 -36661310 - L2 LINE L2 -33 3280 3165 220 111 37 0 chr12 107621310 107621364 -36661125 + T-rich Low_complexity Low_complexity 2 57 0 251 304 0 0 chr12 107621422 107621478 -36661011 + L3b LINE CR1 1520 1575 -8 1913 114 15 8 chr12 107622374 107622637 -36659852 + AluSx SINE Alu 21 285 -27 447 204 108 0 chr12 107623429 107623522 -36658967 + MIR SINE MIR 49 151 -111 786 180 0 23 chr12 107623837 107623965 -36658524 - FLAM_A SINE Alu -5 128 4 191 316 248 15 chr12 107624169 107624302 -36658187 + MIR SINE MIR 49 212 -50 246 62 0 0 chr12 107624756 107624788 -36657701 + (T)n Simple_repeat Simple_repeat 1 32 0 1874 130 7 44 chr12 107625279 107625606 -36656883 + AluSx SINE Alu 1 316 0 3200 81 29 11 chr12 107626098 107626540 -36655949 - L1PA13 LINE L1 0 6163 5714 260 316 120 57 chr12 107626674 107626990 -36655499 + L2 LINE L2 2937 3272 0 1040 215 37 16 chr12 107627066 107627312 -36655177 + MIR SINE MIR 12 262 0 1712 211 37 23 chr12 107627735 107628166 -36654323 + L1MB8 LINE L1 5731 6167 -11 291 161 0 0 chr12 107628176 107628232 -36654257 + GA-rich Low_complexity Low_complexity 1 56 0 800 261 39 12 chr12 107628232 107628476 -36654013 + MIR SINE MIR 3 254 -8 207 224 52 0 chr12 107628761 107628819 -36653670 - L2 LINE L2 -9 3304 3244 * 443 239 141 43 chr12 107628808 107629042 -36653447 - L2 LINE L2 -165 3107 2851 481 34 0 0 chr12 107629088 107629147 -36653342 - L1PA8A LINE L1 -410 5721 5663 1909 81 0 0 chr12 107629147 107629370 -36653119 + L1PA8 LINE L1 5932 6166 -6 190 296 0 0 chr12 107629414 107629458 -36653031 - L2 LINE L2 -541 2773 2730 184 238 0 95 chr12 107630551 107630614 -36651875 + MIR3 SINE MIR 140 196 -12 23 33 0 0 chr12 107631065 107631095 -36651394 + AT_rich Low_complexity Low_complexity 1 30 0 1712 161 27 3 chr12 107631824 107632122 -36650367 + AluJo SINE Alu 1 305 -7 919 201 0 0 chr12 107633404 107633563 -36648926 - AluJo SINE Alu -17 295 137 687 172 62 0 chr12 107633567 107633695 -36648794 - MIR SINE MIR -121 141 6 652 278 87 34 chr12 107634042 107634518 -36647971 + L2 LINE L2 2632 3126 -187 650 206 101 63 chr12 107634522 107634644 -36647845 - LTR16A1 LTR ERVL 0 457 341 2049 138 6 3 chr12 107634644 107634955 -36647534 + AluSx SINE Alu 1 312 0 650 206 101 63 chr12 107634955 107635119 -36647370 - LTR16A1 LTR ERVL -116 341 160 842 133 0 70 chr12 107635351 107635494 -36646995 - AluJo SINE Alu -169 133 1 4244 324 68 33 chr12 107635811 107636350 -36646139 - HERVL LTR ERVL -437 5217 4698 1746 127 19 0 chr12 107636350 107636609 -36645880 - AluSx SINE Alu -29 283 20 4244 324 68 33 chr12 107636609 107636722 -36645767 - HERVL LTR ERVL -956 4698 4590 1999 135 0 22 chr12 107636722 107637033 -36645456 + AluSx SINE Alu 1 304 -8 4244 324 68 33 chr12 107637033 107638850 -36643639 - HERVL LTR ERVL -1064 4590 2660 186 43 0 0 chr12 107639011 107639034 -36643455 + (T)n Simple_repeat Simple_repeat 1 23 0 2122 282 62 29 chr12 107639034 107639804 -36642685 - HERVL LTR ERVL -2605 2391 1596 1866 141 0 7 chr12 107640501 107640816 -36641673 - AluJo SINE Alu 0 313 1 2114 194 42 18 chr12 107641045 107641494 -36640995 - MLT1C LTR MaLR -2 465 6 320 293 38 23 chr12 107641495 107641628 -36640861 - HERVL LTR ERVL -4009 987 853 292 212 106 0 chr12 107641803 107641868 -36640621 - Charlie8 DNA MER1_type -1907 510 439 296 210 86 12 chr12 107641868 107641949 -36640540 - LTR67 LTR ERVL 0 557 471 2159 118 0 16 chr12 107641954 107642269 -36640220 + AluSx SINE Alu 1 310 -2 252 346 0 12 chr12 107642537 107642618 -36639871 - LTR67 LTR ERVL -364 193 114 220 45 91 0 chr12 107642629 107642673 -36639816 + T-rich Low_complexity Low_complexity 1 48 0 513 280 169 42 chr12 107642760 107643021 -36639468 - Charlie8 DNA MER1_type -2013 404 111 201 39 0 0 chr12 107643056 107643082 -36639407 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 811 142 0 8 chr12 107643097 107643217 -36639272 - FLAM_C SINE Alu -24 119 1 2158 141 3 0 chr12 107643248 107643560 -36638929 - AluSq SINE Alu 0 313 1 673 295 106 13 chr12 107644105 107644332 -36638157 - MIR SINE MIR -12 250 3 1845 107 55 11 chr12 107644492 107644806 -36637683 - AluSx SINE Alu 0 326 1 236 326 67 52 chr12 107644839 107644974 -36637515 + MIR SINE MIR 108 244 -18 1918 142 34 98 chr12 107645078 107645316 -36637173 - MLT1B LTR MaLR 0 390 189 859 168 84 13 chr12 107645316 107645471 -36637018 - FAM SINE Alu -9 166 1 1918 142 34 98 chr12 107645471 107645649 -36636840 - MLT1B LTR MaLR -201 189 1 814 130 0 0 chr12 107645707 107645822 -36636667 - FLAM_C SINE Alu -18 115 1 2292 107 0 13 chr12 107646536 107646846 -36635643 - AluSx SINE Alu -6 306 1 461 221 12 58 chr12 107647041 107647182 -36635307 - MIR SINE MIR -64 144 28 2138 143 0 0 chr12 107647287 107647594 -36634895 + AluSx SINE Alu 1 307 -5 273 139 0 23 chr12 107648042 107648085 -36634404 - LTR16B LTR ERVL 0 464 423 895 174 7 7 chr12 107648098 107648247 -36634242 - FRAM SINE Alu -30 146 1 788 254 124 27 chr12 107648247 107648578 -36633911 - LTR16B LTR ERVL -55 409 47 525 274 134 5 chr12 107648712 107648825 -36633664 - MIR SINE MIR -16 246 149 2398 158 2 33 chr12 107648825 107649223 -36633266 + MLT1B LTR MaLR 3 388 -2 525 274 134 5 chr12 107649223 107649310 -36633179 - MIR SINE MIR -113 149 20 274 319 28 35 chr12 107649467 107649611 -36632878 + MIR SINE MIR 50 192 -70 2249 126 0 0 chr12 107649758 107650067 -36632422 - AluSx SINE Alu -3 309 1 754 264 0 29 chr12 107650270 107650478 -36632011 - MIR SINE MIR -26 236 35 2304 96 10 0 chr12 107650543 107650844 -36631645 - AluSx SINE Alu -8 304 1 2141 266 161 24 chr12 107650845 107651775 -36630714 - L2 LINE L2 -852 2462 1405 486 318 32 13 chr12 107651888 107652042 -36630447 + L2 LINE L2 3116 3272 0 2309 96 0 3 chr12 107652112 107652413 -36630076 + AluSc SINE Alu 2 301 -8 2294 91 3 23 chr12 107652888 107653196 -36629293 + AluSp SINE Alu 1 302 -11 371 241 19 35 chr12 107653279 107653461 -36629028 + MIR SINE MIR 2 235 -27 250 103 0 35 chr12 107653484 107653542 -36628947 + (TAA)n Simple_repeat Simple_repeat 1 56 0 692 198 0 0 chr12 107653954 107654070 -36628419 - AluJb SINE Alu -20 292 177 293 302 38 0 chr12 107654223 107654329 -36628160 - L2 LINE L2 -1 3312 3203 297 51 0 0 chr12 107654525 107654564 -36627925 + (GA)n Simple_repeat Simple_repeat 2 40 0 1955 227 50 6 chr12 107654603 107655088 -36627401 - Charlie4a DNA MER1_type 0 508 3 231 282 47 24 chr12 107655649 107655734 -36626755 + MER103 DNA DNA 78 164 -2 1453 179 45 28 chr12 107656684 107656975 -36625514 - AluJo SINE Alu -16 296 1 260 143 20 0 chr12 107656996 107657045 -36625444 + MIR SINE MIR 188 237 -25 1552 121 35 13 chr12 107657291 107657522 -36624967 + AluSx SINE Alu 1 236 -76 207 0 0 0 chr12 107657538 107657561 -36624928 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr12 107658090 107658110 -36624379 + (TG)n Simple_repeat Simple_repeat 1 20 0 324 111 0 0 chr12 107658110 107658164 -36624325 + (GA)n Simple_repeat Simple_repeat 2 55 0 2172 124 3 7 chr12 107658207 107658513 -36623976 - AluSx SINE Alu -7 305 1 1581 235 94 15 chr12 107658726 107659194 -36623295 - MLT1D LTR MaLR 0 505 1 30 0 0 0 chr12 107659245 107659275 -36623214 + AT_rich Low_complexity Low_complexity 1 30 0 4808 162 21 7 chr12 107659275 107659663 -36622826 - L1MB1 LINE L1 -1 6167 5786 2398 102 0 0 chr12 107659663 107659966 -36622523 - AluSx SINE Alu -9 303 1 4808 162 21 7 chr12 107659966 107660429 -36622060 - L1MB1 LINE L1 -382 5786 5309 396 238 132 23 chr12 107660692 107660874 -36621615 + MIR SINE MIR 16 214 -48 * 1190 288 60 26 chr12 107660872 107661442 -36621047 + L2 LINE L2 2710 3303 -10 262 194 69 97 chr12 107661543 107661615 -36620874 + L2 LINE L2 3151 3220 -52 329 312 46 103 chr12 107661798 107662167 -36620322 - L2 LINE L2 0 3272 2925 238 246 18 0 chr12 107662221 107662278 -36620211 - MIR SINE MIR -8 254 197 285 29 0 0 chr12 107662542 107662817 -36619672 + (TTA)n Simple_repeat Simple_repeat 1 275 0 1457 178 7 72 chr12 107662621 107662783 -36619706 - AluJo SINE Alu -24 288 117 285 29 0 0 chr12 107662783 107662817 -36619672 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2130 128 0 0 chr12 107662817 107663099 -36619390 - AluSx SINE Alu -30 282 1 1457 178 7 72 chr12 107663099 107663239 -36619250 - AluJo SINE Alu -193 119 5 230 267 178 52 chr12 107663254 107663314 -36619175 + L2 LINE L2 3161 3212 -101 2415 93 0 6 chr12 107663314 107663626 -36618863 - AluY SINE Alu -1 310 1 919 148 0 108 chr12 107663628 107663804 -36618685 - FRAM SINE Alu -9 157 1 230 267 178 52 chr12 107663804 107663875 -36618614 + L2 LINE L2 3212 3312 -1 1853 135 0 71 chr12 107664260 107664586 -36617903 - AluSx SINE Alu -9 303 1 520 257 60 44 chr12 107664654 107664837 -36617652 + MIR3 SINE MIR 17 202 -6 695 240 41 12 chr12 107664943 107665114 -36617375 + L3 LINE CR1 1381 1556 -21 779 201 30 91 chr12 107665182 107665446 -36617043 - MER112 DNA MER1_type -11 249 2 1146 70 7 7 chr12 107666078 107666221 -36616268 - AluSq SINE Alu -149 164 22 279 222 0 32 chr12 107666683 107666746 -36615743 - MIR3 SINE MIR -35 173 113 1648 188 44 0 chr12 107666875 107667173 -36615316 - MER58B DNA MER1_type -27 314 4 366 275 18 0 chr12 107667184 107667293 -36615196 + MER113 DNA MER1_type? 1 111 -410 2328 110 0 3 chr12 107667371 107667681 -36614808 - AluSx SINE Alu -3 309 1 407 103 27 65 chr12 107667704 107667889 -36614600 + (TA)n Simple_repeat Simple_repeat 2 179 0 351 295 19 0 chr12 107668023 107668128 -36614361 + MIR3 SINE MIR 99 205 -3 1207 103 0 0 chr12 107668293 107668449 -36614040 + AluSg/x SINE Alu 142 297 -15 1384 118 16 63 chr12 107668449 107668704 -36613785 + Tigger2 DNA MER2_type 2283 2525 -193 1207 162 5 0 chr12 107668768 107668953 -36613536 + Tigger2 DNA MER2_type 2533 2718 0 350 266 180 88 chr12 107670277 107670329 -36612160 + L2 LINE L2 2699 2745 -568 1000 239 153 50 chr12 107670329 107670827 -36611662 - MLT1H LTR MaLR 0 549 1 350 266 180 88 chr12 107670827 107671189 -36611300 + L2 LINE L2 2745 3072 -241 3110 86 20 82 chr12 107671189 107671396 -36611093 - L1PB1 LINE L1 -7 6144 5926 2243 92 0 0 chr12 107671396 107671678 -36610811 - AluSc SINE Alu -27 282 1 3110 86 20 82 chr12 107671678 107671863 -36610626 - L1PB1 LINE L1 -225 5926 5787 288 0 0 0 chr12 107671863 107671895 -36610594 + (TG)n Simple_repeat Simple_repeat 2 33 0 3110 86 20 82 chr12 107671895 107672000 -36610489 - L1PB1 LINE L1 -364 5787 5677 350 266 180 88 chr12 107672000 107672121 -36610368 + L2 LINE L2 3072 3269 -44 255 264 122 37 chr12 107672126 107672243 -36610246 + MER5B DNA MER1_type 2 178 0 1424 184 106 3 chr12 107672572 107672855 -36609634 - AluJb SINE Alu 0 312 1 207 361 12 0 chr12 107673763 107673846 -36608643 - MIR3 SINE MIR -41 167 84 409 292 53 54 chr12 107673923 107674099 -36608390 - MIR SINE MIR -48 214 38 216 314 0 35 chr12 107674233 107674319 -36608170 - L2 LINE L2 -17 3296 3214 1300 267 91 43 chr12 107674354 107674800 -36607689 - L2 LINE L2 -167 3146 2723 2949 16 0 0 chr12 107674800 107675118 -36607371 + AluYb8 SINE Alu 1 318 0 288 0 0 0 chr12 107675120 107675152 -36607337 + (TA)n Simple_repeat Simple_repeat 2 33 0 1300 267 91 43 chr12 107675152 107675235 -36607254 - L2 LINE L2 -590 2723 2645 2062 135 6 28 chr12 107675235 107675554 -36606935 + AluSx SINE Alu 1 312 0 1300 267 91 43 chr12 107675554 107675681 -36606808 - L2 LINE L2 -668 2645 2453 308 250 0 25 chr12 107675878 107675958 -36606531 + MIR SINE MIR 69 146 -62 397 250 71 0 chr12 107675987 107676099 -36606390 + L2 LINE L2 3194 3313 0 399 246 91 0 chr12 107676509 107676619 -36605870 + L2 LINE L2 3194 3313 0 259 268 61 0 chr12 107676665 107676747 -36605742 + MIR SINE MIR 176 262 0 451 126 11 11 chr12 107676759 107676846 -36605643 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 218 307 158 0 chr12 107676853 107676954 -36605535 - L2 LINE L2 0 3272 3156 1011 210 38 13 chr12 107677540 107677778 -36604711 - L2 LINE L2 -650 2664 2421 400 265 27 27 chr12 107677778 107677925 -36604564 - L1ME4a LINE L1 -11 6110 5964 664 226 34 60 chr12 107678131 107678180 -36604309 - L1ME4a LINE L1 -247 5874 5825 2336 108 0 0 chr12 107678180 107678475 -36604014 + AluSx SINE Alu 1 295 -17 664 226 34 60 chr12 107678475 107678660 -36603829 - L1ME4a LINE L1 -296 5825 5646 314 162 29 0 chr12 107679078 107679146 -36603343 + CT-rich Low_complexity Low_complexity 1 70 0 1885 150 13 22 chr12 107679163 107679476 -36603013 - AluJb SINE Alu -2 310 1 1477 187 14 128 chr12 107679736 107680104 -36602385 - L1MC4a LINE L1 -1546 6262 5966 2037 123 7 0 chr12 107680104 107680381 -36602108 - AluSx SINE Alu -13 299 21 1477 187 14 128 chr12 107680381 107680521 -36601968 - L1MC4a LINE L1 -1842 5966 5812 2245 102 16 0 chr12 107680540 107680844 -36601645 - AluSc SINE Alu 0 309 1 1288 213 28 109 chr12 107680845 107681268 -36601221 - L1MC4a LINE L1 -1984 5824 5436 938 296 14 17 chr12 107681264 107681551 -36600938 - L1MEc LINE L1 -6073 323 38 * 408 276 110 59 chr12 107681553 107681926 -36600563 + HAL1 LINE L1 1215 1606 -901 205 80 0 0 chr12 107681946 107681971 -36600518 + (T)n Simple_repeat Simple_repeat 1 25 0 295 198 156 10 chr12 107682309 107682405 -36600084 + MIR SINE MIR 94 203 -59 1686 173 11 0 chr12 107682422 107682700 -36599789 + AluJb SINE Alu 1 281 -31 1647 130 119 8 chr12 107682701 107682962 -36599527 - AluSg1 SINE Alu -13 296 7 464 192 50 0 chr12 107683208 107683307 -36599182 + MER5A DNA MER1_type 9 112 -77 399 284 42 0 chr12 107683476 107683571 -36598918 + L2 LINE L2 3187 3285 -28 424 283 25 31 chr12 107683578 107683737 -36598752 - MIR SINE MIR -58 204 47 251 234 122 56 chr12 107683932 107684039 -36598450 + MIR SINE MIR 11 124 -138 1952 164 0 3 chr12 107684145 107684457 -36598032 - AluJb SINE Alu -1 311 1 367 298 0 16 chr12 107684586 107684707 -36597782 + MIR SINE MIR 123 241 -21 254 290 0 0 chr12 107684759 107684821 -36597668 + MIR3 SINE MIR 98 159 -49 2048 79 24 48 chr12 107685546 107685838 -36596651 - L1PA8 LINE L1 0 6172 5888 1937 120 3 65 chr12 107686640 107686971 -36595518 - AluSx SINE Alu 0 312 1 451 312 116 9 chr12 107687072 107687287 -36595202 + MIR SINE MIR 17 254 -8 335 349 59 58 chr12 107687301 107687474 -36595015 + L2 LINE L2 2444 2615 -657 1985 125 10 16 chr12 107687474 107687640 -36594849 - AluSx SINE Alu -11 301 136 2300 104 0 0 chr12 107687640 107687937 -36594552 - AluY SINE Alu -14 297 1 1985 125 10 16 chr12 107687937 107688073 -36594416 - AluSx SINE Alu -176 136 1 335 349 59 58 chr12 107688073 107688494 -36593995 + L2 LINE L2 2615 3054 -218 184 206 69 157 chr12 107688585 107688665 -36593824 + L2 LINE L2 3180 3265 -7 2007 135 0 0 chr12 107688665 107688947 -36593542 + AluSx SINE Alu 1 282 -30 423 0 0 0 chr12 107688950 107688997 -36593492 + (CATA)n Simple_repeat Simple_repeat 2 48 0 184 206 69 157 chr12 107688997 107689014 -36593475 + L2 LINE L2 3267 3272 0 22 35 0 0 chr12 107690173 107690202 -36592287 + AT_rich Low_complexity Low_complexity 1 29 0 2390 60 0 3 chr12 107690237 107690556 -36591933 + AluY SINE Alu 1 318 0 377 316 58 7 chr12 107691009 107691164 -36591325 - MIR SINE MIR -7 255 93 * 783 291 136 17 chr12 107691133 107691307 -36591182 + L2 LINE L2 2513 2665 -649 2369 88 3 3 chr12 107691307 107691604 -36590885 + AluSx SINE Alu 1 297 -15 783 291 136 17 chr12 107691604 107691842 -36590647 + L2 LINE L2 2665 2974 -340 765 182 23 8 chr12 107692146 107692278 -36590211 - AluJo SINE Alu -177 135 2 1965 195 126 24 chr12 107692285 107692809 -36589680 - MLT1D LTR MaLR 0 626 28 627 258 50 0 chr12 107693285 107693444 -36589045 + MIR SINE MIR 90 256 -6 279 0 0 0 chr12 107693610 107693641 -36588848 + (TG)n Simple_repeat Simple_repeat 1 31 0 190 386 11 0 chr12 107693793 107693881 -36588608 + L3 LINE CR1 1466 1554 -23 230 233 165 48 chr12 107694299 107694402 -36588087 + L2 LINE L2 3137 3251 -21 2147 126 27 0 chr12 107694647 107694948 -36587541 - AluSx SINE Alu -2 310 2 599 181 0 19 chr12 107695894 107695999 -36586490 - U13 snRNA snRNA -1 103 1 2201 110 13 3 chr12 107696846 107697145 -36585344 + AluSx SINE Alu 2 303 -9 283 278 56 11 chr12 107697656 107697746 -36584743 + MIR SINE MIR 119 212 -50 589 333 31 16 chr12 107698024 107698276 -36584213 - MIR SINE MIR -6 256 2 1962 151 167 16 chr12 107698355 107698727 -36583762 + MSTA LTR MaLR 1 428 0 489 283 85 34 chr12 107698940 107699073 -36583416 + MIR3 SINE MIR 12 158 -50 2471 115 19 22 chr12 107699073 107699438 -36583051 - THE1B LTR MaLR 0 364 1 489 283 85 34 chr12 107699438 107699481 -36583008 + MIR3 SINE MIR 158 197 -11 238 169 0 169 chr12 107700156 107700188 -36582301 + ORSL DNA AcHobo 4 19 -256 2059 125 7 3 chr12 107700188 107700483 -36582006 - AluJb SINE Alu -16 296 1 238 169 0 169 chr12 107700483 107700521 -36581968 + ORSL DNA AcHobo 19 62 -213 223 218 192 51 chr12 107700852 107700930 -36581559 + MIR3 SINE MIR 78 166 -42 503 237 100 26 chr12 107701182 107701372 -36581117 + MLT1L LTR MaLR 403 606 -9 1815 154 7 7 chr12 107701372 107701670 -36580819 - AluJb SINE Alu -6 306 9 1931 170 22 22 chr12 107701930 107702231 -36580258 + MLT1A1 LTR MaLR 1 301 -64 2114 122 24 0 chr12 107702231 107702519 -36579970 + AluSx SINE Alu 1 295 -17 2155 128 7 0 chr12 107702519 107702817 -36579672 + AluSx SINE Alu 1 300 -12 1931 170 22 22 chr12 107702817 107702879 -36579610 + MLT1A1 LTR MaLR 299 365 0 2360 54 4 0 chr12 107703213 107703489 -36579000 - AluY SINE Alu -13 298 22 294 267 20 50 chr12 107705349 107705450 -36577039 + MIR SINE MIR 117 214 -48 1832 118 0 0 chr12 107705557 107705794 -36576695 + AluSx SINE Alu 1 237 -75 279 362 85 7 chr12 107705836 107705977 -36576512 + MIR SINE MIR 55 206 -56 401 226 12 0 chr12 107706034 107706118 -36576371 + L2 LINE L2 3184 3268 -4 312 342 74 0 chr12 107707428 107707577 -36574912 + L3 LINE CR1 1129 1288 -289 326 283 130 0 chr12 107707606 107707744 -36574745 - MIR SINE MIR -50 212 57 260 281 177 26 chr12 107707754 107707946 -36574543 + L3 LINE CR1 1327 1547 -30 198 0 0 0 chr12 107708674 107708696 -36573793 + (T)n Simple_repeat Simple_repeat 1 22 0 223 316 0 13 chr12 107708857 107708936 -36573553 + MIR SINE MIR 184 261 -1 22 0 0 0 chr12 107709045 107709067 -36573422 + AT_rich Low_complexity Low_complexity 1 22 0 289 298 75 0 chr12 107709684 107709778 -36572711 + L2 LINE L2 2369 2469 -845 465 275 67 43 chr12 107709829 107710281 -36572208 - L1ME LINE L1 -4887 1232 763 315 0 0 0 chr12 107710452 107710487 -36572002 + (T)n Simple_repeat Simple_repeat 1 35 0 236 232 43 0 chr12 107710487 107710556 -36571933 - L1ME LINE L1 -5487 632 561 207 0 0 0 chr12 107710917 107710940 -36571549 + (T)n Simple_repeat Simple_repeat 1 23 0 454 258 33 108 chr12 107711063 107711396 -36571093 - MLT1I LTR MaLR -29 380 73 338 318 0 30 chr12 107711754 107711886 -36570603 - MIR SINE MIR -27 235 108 392 205 128 149 chr12 107712586 107713016 -36569473 + HAL1 LINE L1 91 511 -1996 350 318 27 9 chr12 107713021 107713131 -36569358 + L2 LINE L2 3202 3313 0 441 325 22 48 chr12 107713141 107713409 -36569080 + HAL1 LINE L1 523 783 -1724 219 69 0 0 chr12 107713417 107713446 -36569043 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 1225 139 0 0 chr12 107713450 107713616 -36568873 - AluJb SINE Alu -13 299 134 999 255 99 43 chr12 107713617 107714009 -36568480 - L2 LINE L2 -9 3304 2891 1744 224 53 39 chr12 107714043 107714632 -36567857 - L2 LINE L2 -885 2429 1833 560 222 113 39 chr12 107714645 107714875 -36567614 + HAL1 LINE L1 808 1054 -1453 212 352 130 0 chr12 107714875 107714983 -36567506 - L2 LINE L2 -639 2675 2554 1584 172 15 7 chr12 107715029 107715302 -36567187 + AluJo SINE Alu 5 279 -33 492 152 63 0 chr12 107715472 107715551 -36566938 - AluJ/FLAM SINE Alu -228 84 1 529 215 102 21 chr12 107715552 107715609 -36566880 - L1ME4a LINE L1 -106 6015 5964 1387 73 123 0 chr12 107715609 107715813 -36566676 + MER30 DNA MER1_type 2 230 0 529 215 102 21 chr12 107715813 107715941 -36566548 - L1ME4a LINE L1 -157 5964 5815 262 198 25 49 chr12 107715944 107716025 -36566464 - L1ME3 LINE L1 -17 6145 6067 1726 220 55 19 chr12 107716026 107716503 -36565986 - L1ME3 LINE L1 -172 5992 5499 372 168 42 0 chr12 107716928 107717023 -36565466 + CT-rich Low_complexity Low_complexity 2 100 0 3062 154 10 38 chr12 107717131 107717843 -36564646 + pTR5 LTR ERV1 742 1433 -1005 2189 88 0 7 chr12 107718181 107718475 -36564014 + AluY SINE Alu 18 309 -2 299 280 0 0 chr12 107718483 107718583 -36563906 + L1ME LINE L1 3387 3486 -2660 2106 135 7 0 chr12 107718713 107719010 -36563479 + AluSq SINE Alu 1 299 -14 1453 200 136 8 chr12 107719144 107719662 -36562827 - LTR50 LTR ERVL -113 682 19 1775 163 36 27 chr12 107719817 107720118 -36562371 + AluJb SINE Alu 1 304 -8 651 236 67 44 chr12 107720228 107720453 -36562036 - MIR SINE MIR -13 249 20 1568 145 33 0 chr12 107721080 107721356 -36561133 - L1MC1 LINE L1 -12 6321 6037 740 258 130 34 chr12 107721631 107722123 -36560366 - MLT1L LTR MaLR -50 565 1 347 301 27 89 chr12 107722125 107722494 -36559995 + L2 LINE L2 2230 2575 -739 21 36 0 0 chr12 107722637 107722665 -36559824 + AT_rich Low_complexity Low_complexity 1 28 0 538 296 121 23 chr12 107723564 107723871 -36558618 + L1ME LINE L1 4995 5331 -815 581 302 96 2 chr12 107723906 107724271 -36558218 + L1ME LINE L1 5397 5800 -362 1371 253 110 12 chr12 107725138 107725565 -36556924 - MLT1J LTR MaLR -37 474 6 22 0 0 0 chr12 107725730 107725752 -36556737 + AT_rich Low_complexity Low_complexity 1 22 0 455 315 87 0 chr12 107726606 107726755 -36555734 - L2 LINE L2 0 3272 3111 625 332 61 9 chr12 107727207 107727436 -36555053 - MIR SINE MIR -21 241 1 23 33 0 0 chr12 107727467 107727497 -36554992 + AT_rich Low_complexity Low_complexity 1 30 0 185 278 148 37 chr12 107728165 107728273 -36554216 - L2 LINE L2 -1 3312 3193 238 322 141 35 chr12 107728591 107728790 -36553699 + MIR SINE MIR 9 228 -34 2527 37 0 0 chr12 107728860 107729154 -36553335 + AluY SINE Alu 1 294 -17 294 264 170 9 chr12 107729237 107729343 -36553146 + L2 LINE L2 3191 3313 0 22 56 0 0 chr12 107729922 107729958 -36552531 + AT_rich Low_complexity Low_complexity 1 36 0 533 260 58 24 chr12 107731301 107731509 -36550980 - MER112 DNA MER1_type -45 215 1 775 197 0 0 chr12 107731625 107731762 -36550727 + FRAM SINE Alu 26 162 -14 416 316 53 13 chr12 107731946 107732098 -36550391 - MIR SINE MIR -13 249 92 549 322 71 44 chr12 107732155 107732450 -36550039 - L3b LINE CR1 -136 1447 1145 234 256 60 45 chr12 107733186 107733385 -36549104 - L1ME4a LINE L1 -161 5960 5759 1267 209 13 0 chr12 107733403 107733642 -36548847 + MIR SINE MIR 18 259 -3 1899 135 7 28 chr12 107733909 107734198 -36548291 - AluSx SINE Alu -17 295 13 309 256 128 61 chr12 107734246 107734426 -36548063 - L1ME4a LINE L1 -2104 5704 5513 420 162 86 51 chr12 107734428 107734513 -36547976 - L1ME4a LINE L1 -2337 5471 5379 2046 121 17 10 chr12 107734513 107734810 -36547679 + AluSx SINE Alu 1 299 -13 420 162 86 51 chr12 107734810 107734841 -36547648 - L1ME4a LINE L1 -2429 5379 5351 307 260 7 27 chr12 107734857 107735007 -36547482 - L1ME4a LINE L1 -2396 5412 5266 246 229 9 182 chr12 107735020 107735234 -36547255 - L2 LINE L2 -1 3312 3136 474 219 26 9 chr12 107736163 107736277 -36546212 - MER45A DNA AcHobo -1 177 62 395 277 76 56 chr12 107736503 107736752 -36545737 + MER112 DNA MER1_type 1 254 -6 977 221 69 71 chr12 107736897 107737307 -36545182 + L1ME4a LINE L1 5540 5949 -172 2065 156 0 0 chr12 107737307 107737602 -36544887 + AluSx SINE Alu 1 295 -17 977 221 69 71 chr12 107737602 107737665 -36544824 + L1ME4a LINE L1 5949 6011 -110 2016 167 31 16 chr12 107737665 107738049 -36544440 - MLT1B LTR MaLR 0 390 1 977 221 69 71 chr12 107738049 107738139 -36544350 + L1ME4a LINE L1 6011 6103 -18 21 0 0 0 chr12 107738152 107738173 -36544316 + AT_rich Low_complexity Low_complexity 1 21 0 1610 145 52 28 chr12 107738497 107738614 -36543875 + AluJo SINE Alu 7 120 -192 2238 92 13 29 chr12 107738614 107738929 -36543560 + AluSg SINE Alu 1 310 0 1610 145 52 28 chr12 107738929 107739101 -36543388 + AluJo SINE Alu 120 303 -9 465 250 106 56 chr12 107739235 107739395 -36543094 - MIR SINE MIR -78 184 17 25 0 0 0 chr12 107739900 107739925 -36542564 + AT_rich Low_complexity Low_complexity 1 25 0 303 305 90 23 chr12 107740117 107740294 -36542195 + MIR SINE MIR 3 191 -71 1599 205 51 13 chr12 107740312 107740707 -36541782 - MER63D DNA MER1_type 0 1061 652 979 200 47 28 chr12 107740710 107740925 -36541564 - MER20 DNA MER1_type 0 219 1 419 223 33 2 chr12 107740930 107741110 -36541379 + MER58 DNA MER1_type 2 2419 -1 * 1610 201 138 57 chr12 107741110 107741713 -36540776 - MER63D DNA MER1_type -408 653 1 585 330 50 52 chr12 107741713 107742198 -36540291 + L2 LINE L2 2818 3301 -12 1585 277 64 35 chr12 107742493 107742639 -36539850 - L2 LINE L2 -64 3249 3109 1942 152 7 3 chr12 107742639 107742942 -36539547 + AluSx SINE Alu 1 304 -8 1585 277 64 35 chr12 107742942 107743551 -36538938 - L2 LINE L2 -204 3109 2472 1039 234 44 28 chr12 107743708 107743956 -36538533 - MIR SINE MIR 0 262 11 281 26 0 26 chr12 107744342 107744381 -36538108 + (CA)n Simple_repeat Simple_repeat 1 38 0 204 272 39 68 chr12 107744426 107744529 -36537960 - L2 LINE L2 0 3272 3173 208 258 0 61 chr12 107744941 107745007 -36537482 + L2 LINE L2 3210 3271 -1 667 227 68 0 chr12 107745017 107745180 -36537309 - MIR SINE MIR 0 262 89 687 217 6 0 chr12 107746872 107747029 -36535460 + L1MA10 LINE L1 6169 6326 -8 321 26 0 0 chr12 107747029 107747067 -36535422 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 546 316 24 19 chr12 107747574 107747631 -36534858 - MIR SINE MIR -44 218 163 2347 93 7 0 chr12 107747631 107747941 -36534548 - AluSx SINE Alu 0 312 1 546 316 24 19 chr12 107747941 107748095 -36534394 - MIR SINE MIR -99 163 6 858 220 0 0 chr12 107748648 107748798 -36533691 + FRAM SINE Alu 1 150 -16 50 31 0 0 chr12 107749241 107749305 -36533184 + AT_rich Low_complexity Low_complexity 1 64 0 1463 171 0 42 chr12 107749864 107750174 -36532315 + L1MC1 LINE L1 6017 6313 -20 653 296 121 9 chr12 107750564 107751026 -36531463 - L1MC/D LINE L1 -2030 5778 5265 311 277 129 26 chr12 107751211 107751366 -36531123 - L1MC/D LINE L1 -1094 5052 4882 186 274 40 81 chr12 107751426 107751550 -36530939 + L2 LINE L2 2941 3059 -213 971 276 144 11 chr12 107751550 107752064 -36530425 + L2 LINE L2 2722 3310 -3 739 256 86 71 chr12 107752594 107753129 -36529360 - MLT1H LTR MaLR 0 549 7 1910 138 3 38 chr12 107753399 107753541 -36528948 + AluJb SINE Alu 1 146 -166 2344 61 4 0 chr12 107753541 107753821 -36528668 + AluY SINE Alu 1 281 -30 334 24 0 0 chr12 107753623 107753860 -36528629 + AluY SINE Alu 84 320 0 1910 138 3 38 chr12 107753821 107754034 -36528455 + AluJb SINE Alu 146 307 -5 224 276 0 0 chr12 107754324 107754382 -36528107 + (TTCA)n Simple_repeat Simple_repeat 2 59 0 289 294 176 34 chr12 107754382 107754501 -36527988 - L2 LINE L2 0 3272 3137 408 208 0 0 chr12 107754615 107754692 -36527797 - MER96 DNA MER1_type? 0 175 99 2250 122 3 0 chr12 107754829 107755133 -36527356 - AluSx SINE Alu -7 305 1 47 19 0 0 chr12 107755250 107755304 -36527185 + AT_rich Low_complexity Low_complexity 1 54 0 2464 101 0 0 chr12 107755609 107755916 -36526573 + AluSx SINE Alu 1 307 -5 497 242 172 40 chr12 107757092 107757290 -36525199 - MER58A DNA MER1_type 0 224 1 186 43 0 0 chr12 107757426 107757449 -36525040 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2247 87 10 3 chr12 107757453 107757741 -36524748 - AluSx SINE Alu -22 290 1 346 215 74 40 chr12 107757786 107757935 -36524554 - L1ME LINE L1 -344 5818 5665 441 332 84 23 chr12 107758863 107759173 -36523316 + L1MC/D LINE L1 5254 5582 -2226 22 70 0 0 chr12 107759217 107759260 -36523229 + AT_rich Low_complexity Low_complexity 1 43 0 2235 108 3 49 chr12 107759494 107759819 -36522670 - AluSx SINE Alu -2 310 1 2103 142 10 0 chr12 107759904 107760207 -36522282 - AluSx SINE Alu -6 306 1 1299 233 47 26 chr12 107760333 107760839 -36521650 + Charlie2 DNA MER1_type 2318 2834 -28 1542 198 33 18 chr12 107761215 107761548 -36520941 - MER58B DNA MER1_type 0 341 4 206 179 0 0 chr12 107762066 107762105 -36520384 - MIR SINE MIR -6 256 218 381 275 27 67 chr12 107762335 107762484 -36520005 + L3b LINE CR1 1320 1462 -121 281 192 20 40 chr12 107762534 107762633 -36519856 + (CATATA)n Simple_repeat Simple_repeat 3 99 0 1810 161 17 17 chr12 107762710 107763002 -36519487 - AluJb SINE Alu -20 292 1 263 275 81 79 chr12 107763683 107764067 -36518422 + L2 LINE L2 1608 3313 0 253 298 76 23 chr12 107765456 107765587 -36516902 - MIR3 SINE MIR -17 191 54 2152 123 10 3 chr12 107767358 107767658 -36514831 + AluSc SINE Alu 1 302 -7 381 312 104 62 chr12 107768038 107768375 -36514114 - L2 LINE L2 -45 3268 2918 183 293 0 0 chr12 107768426 107768467 -36514022 + MIR SINE MIR 65 105 -103 391 287 112 26 chr12 107768872 107769220 -36513269 - LTR16C LTR ERVL -18 473 96 287 247 82 31 chr12 107769979 107770076 -36512413 + MIR SINE MIR 110 211 -51 1872 96 93 21 chr12 107770264 107770555 -36511934 + AluSx SINE Alu 1 312 0 846 145 0 0 chr12 107770830 107770961 -36511528 - FRAM SINE Alu -4 172 42 324 290 48 16 chr12 107771757 107771881 -36510608 + MIR SINE MIR 40 167 -95 * 448 310 32 13 chr12 107771869 107772027 -36510462 - MIR SINE MIR -34 228 68 736 188 0 0 chr12 107772301 107772429 -36510060 + MER3 DNA MER1_type 1 128 -81 198 71 0 0 chr12 107772432 107772460 -36510029 + (TTTAA)n Simple_repeat Simple_repeat 1 28 0 1807 145 63 41 chr12 107772466 107772831 -36509658 + THE1C LTR MaLR 1 373 -2 271 191 0 0 chr12 107772831 107772878 -36509611 - MER3 DNA MER1_type -119 90 44 408 311 32 42 chr12 107773371 107773561 -36508928 + MIR SINE MIR 25 212 -50 347 264 7 64 chr12 107773635 107773775 -36508714 - MIR SINE MIR -50 212 81 512 295 6 29 chr12 107773991 107774164 -36508325 - MIR SINE MIR -35 227 59 1467 148 59 102 chr12 107774164 107774537 -36507952 - MLT1B LTR MaLR 0 390 34 289 200 0 0 chr12 107774542 107774597 -36507892 + Tigger5 DNA MER2_type 8 62 -2261 480 145 0 0 chr12 107774601 107774684 -36507805 + Tigger5 DNA MER2_type 2077 2159 -164 1354 117 14 22 chr12 107774705 107774928 -36507561 - THE1C LTR MaLR -154 221 1 573 289 30 4 chr12 107775742 107775974 -36506515 - MER112 DNA MER1_type -6 254 17 21 0 0 0 chr12 107776145 107776166 -36506323 + AT_rich Low_complexity Low_complexity 1 21 0 339 339 16 16 chr12 107776354 107776478 -36506011 - L2 LINE L2 0 3272 3149 369 359 71 5 chr12 107776511 107776723 -36505766 - MIR SINE MIR -33 229 4 183 308 34 103 chr12 107776726 107776872 -36505617 - L2 LINE L2 -111 3161 3026 235 245 41 0 chr12 107777041 107777090 -36505399 - L2 LINE L2 -8 3264 3214 728 219 112 0 chr12 107777232 107777419 -36505070 - MER3 DNA MER1_type 0 209 2 262 300 12 25 chr12 107777828 107777908 -36504581 + L2 LINE L2 3169 3247 -25 369 0 0 0 chr12 107777910 107777951 -36504538 + (CA)n Simple_repeat Simple_repeat 2 42 0 2145 114 3 10 chr12 107778416 107778715 -36503774 - AluSx SINE Alu -15 297 1 216 263 140 0 chr12 107778994 107779051 -36503438 + MIR SINE MIR 56 120 -142 2363 97 0 6 chr12 107779359 107779670 -36502819 - AluSc SINE Alu 0 309 1 254 320 29 74 chr12 107779860 107780035 -36502454 - MIR3 SINE MIR -1 207 41 215 265 143 69 chr12 107780067 107780256 -36502233 - L2 LINE L2 -220 3052 2850 544 271 148 5 chr12 107780401 107780611 -36501878 + MIR SINE MIR 13 252 -10 1201 217 46 7 chr12 107780692 107780996 -36501493 + MER46C DNA MER2_type 23 338 0 325 381 25 19 chr12 107780996 107781156 -36501333 - MIR SINE MIR -64 198 38 771 269 40 9 chr12 107781400 107781623 -36500866 - MIR SINE MIR -13 249 20 234 0 0 0 chr12 107781823 107781849 -36500640 + (CA)n Simple_repeat Simple_repeat 1 26 0 649 297 138 24 chr12 107781875 107782461 -36500028 - L1MC4a LINE L1 -1902 5906 5254 252 0 0 0 chr12 107782515 107782543 -36499946 + (TA)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr12 107783448 107783471 -36499018 + AT_rich Low_complexity Low_complexity 1 23 0 25 40 0 20 chr12 107783525 107783552 -36498937 + AT_rich Low_complexity Low_complexity 1 28 -21 2379 81 0 0 chr12 107783552 107783836 -36498653 + AluSq SINE Alu 6 289 -24 25 40 0 20 chr12 107783836 107783858 -36498631 + AT_rich Low_complexity Low_complexity 28 49 0 1962 141 0 0 chr12 107783863 107784146 -36498343 + AluJb SINE Alu 6 288 -24 22 35 0 0 chr12 107784229 107784258 -36498231 + AT_rich Low_complexity Low_complexity 1 29 0 2301 81 3 3 chr12 107784267 107784562 -36497927 + AluY SINE Alu 1 295 -16 294 291 0 12 chr12 107784618 107784704 -36497785 - L2 LINE L2 0 3313 3229 290 238 50 50 chr12 107785074 107785154 -36497335 + L2 LINE L2 3187 3266 -6 2021 128 0 4 chr12 107785419 107785700 -36496789 + AluSx SINE Alu 1 280 -32 636 14 0 0 chr12 107785706 107785779 -36496710 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 231 331 8 24 chr12 107785814 107785938 -36496551 + L3 LINE CR1 799 920 -657 638 327 33 44 chr12 107785940 107786212 -36496277 + L3 LINE CR1 1308 1576 -1 1188 156 42 9 chr12 107786338 107786550 -36495939 - MER20 DNA MER1_type 0 219 1 2372 98 0 3 chr12 107787073 107787379 -36495110 - AluSx SINE Alu -7 305 1 288 218 35 35 chr12 107787533 107787620 -36494869 + MIR SINE MIR 176 262 0 677 207 152 0 chr12 107787782 107787946 -36494543 + MER5A DNA MER1_type 1 189 0 2443 58 10 0 chr12 107788279 107788573 -36493916 - AluY SINE Alu -14 297 1 202 293 85 0 chr12 107788595 107788677 -36493812 - MIR SINE MIR -49 213 125 5098 136 29 0 chr12 107788811 107789689 -36492800 - L1MA6 LINE L1 -4 6296 5394 419 321 51 0 chr12 107789693 107789830 -36492659 - MIR SINE MIR -113 149 6 237 309 67 39 chr12 107790105 107790283 -36492206 - L2 LINE L2 -1143 2171 1989 554 251 76 12 chr12 107790467 107790638 -36491851 - MER58A DNA MER1_type 0 224 43 2199 107 17 0 chr12 107790696 107790995 -36491494 - AluSx SINE Alu -8 304 1 239 296 80 11 chr12 107792131 107792219 -36490270 + MIR SINE MIR 22 115 -147 203 235 222 0 chr12 107792829 107792910 -36489579 + MIR SINE MIR 87 185 -77 391 280 83 0 chr12 107793864 107793996 -36488493 + MIR SINE MIR 11 153 -109 726 164 18 0 chr12 107793999 107794164 -36488325 + (ATG)n Simple_repeat Simple_repeat 2 169 0 414 231 11 11 chr12 107794174 107794265 -36488224 - MIR SINE MIR -16 246 156 323 294 11 0 chr12 107794271 107794363 -36488126 + MIR SINE MIR 170 262 0 181 232 29 72 chr12 107794370 107794439 -36488050 + MIR SINE MIR 164 229 -33 5376 133 8 13 chr12 107794458 107795518 -36486971 - L1PB3 LINE L1 0 6154 5101 384 313 39 16 chr12 107795675 107795803 -36486686 - L2 LINE L2 0 3313 3183 231 304 89 0 chr12 107796533 107796645 -36485844 - HAL1 LINE L1 -6 2501 2380 2126 207 40 69 chr12 107797506 107798287 -36484202 - L1M4 LINE L1 -2458 3688 2931 476 277 25 75 chr12 107799120 107799157 -36483332 + MIR SINE MIR 1 38 -224 1900 143 7 20 chr12 107799157 107799458 -36483031 + AluJo SINE Alu 5 301 -11 476 277 25 75 chr12 107799458 107799579 -36482910 + MIR SINE MIR 38 151 -111 1440 43 0 0 chr12 107799579 107799763 -36482726 - L1PA4 LINE L1 -176 5979 5796 407 259 28 0 chr12 107799791 107799899 -36482590 + MIR SINE MIR 137 247 -15 709 171 0 0 chr12 107800175 107800292 -36482197 + AluSg/x SINE Alu 184 300 -12 294 307 133 44 chr12 107801192 107801485 -36481004 + L2 LINE L2 2564 2882 -432 323 226 85 57 chr12 107801771 107801877 -36480612 - MER91B DNA MER1_type -73 117 9 899 265 40 8 chr12 107802106 107802355 -36480134 + MIR SINE MIR 6 262 0 249 286 0 0 chr12 107802634 107802690 -36479799 - MER91 DNA MER1_type -2 188 133 2161 107 7 3 chr12 107803081 107803380 -36479109 + AluSx SINE Alu 1 300 -12 237 322 60 40 chr12 107803948 107804097 -36478392 + L2 LINE L2 3153 3304 -9 2790 3 10 0 chr12 107805798 107806100 -36476389 - AluYb8 SINE Alu -13 305 1 529 156 73 0 chr12 107806534 107806630 -36475859 - MIR SINE MIR -74 188 86 834 182 198 11 chr12 107807793 107807980 -36474509 - MER58A DNA MER1_type -1 223 2 256 293 92 77 chr12 107809466 107809612 -36472877 - L2 LINE L2 -183 3089 2947 2197 128 13 0 chr12 107809612 107809917 -36472572 - AluSx SINE Alu -3 309 1 256 293 92 77 chr12 107809917 107810295 -36472194 - L2 LINE L2 -325 2947 2553 204 309 62 0 chr12 107811021 107811102 -36471387 + L2 LINE L2 3186 3271 -1 308 212 88 35 chr12 107811262 107811375 -36471114 - L2 LINE L2 -2 3311 3193 975 257 173 19 chr12 107811544 107812016 -36470473 - L2 LINE L2 -2 3311 2761 223 325 79 24 chr12 107812755 107812881 -36469608 + L2 LINE L2 3179 3311 -2 300 309 126 71 chr12 107812957 107813132 -36469357 + L3b LINE CR1 1135 1299 -284 540 219 73 88 chr12 107813132 107813178 -36469311 - MIR SINE MIR -2 260 215 1886 180 3 0 chr12 107813178 107813489 -36469000 - AluSx SINE Alu 0 312 1 2032 147 20 7 chr12 107813498 107813804 -36468685 - AluSx SINE Alu -2 310 1 540 219 73 88 chr12 107813804 107813979 -36468510 - MIR SINE MIR -55 207 31 2108 125 0 3 chr12 107813979 107814266 -36468223 + AluSx SINE Alu 9 294 -18 540 219 73 88 chr12 107814266 107814293 -36468196 - MIR SINE MIR -231 31 5 300 309 126 71 chr12 107814293 107814538 -36467951 + L3b LINE CR1 1299 1578 -5 279 340 137 16 chr12 107814811 107815275 -36467214 - L2 LINE L2 -53 3219 2698 261 0 0 0 chr12 107815467 107815496 -36466993 + (TG)n Simple_repeat Simple_repeat 2 30 0 2547 66 0 0 chr12 107815878 107816182 -36466307 + AluY SINE Alu 1 304 -7 216 314 129 0 chr12 107816315 107816385 -36466104 + MIR SINE MIR 12 90 -172 310 313 26 0 chr12 107816487 107816602 -36465887 + L2 LINE L2 3195 3312 -1 2019 157 0 6 chr12 107817265 107817577 -36464912 + AluJo SINE Alu 1 310 -2 1019 270 106 42 chr12 107817680 107818114 -36464375 - LTR16B LTR ERVL 0 464 3 799 286 129 71 chr12 107818169 107818322 -36464167 + L2 LINE L2 785 928 -2386 2185 106 0 3 chr12 107818322 107818632 -36463857 + AluSg SINE Alu 2 310 0 799 286 129 71 chr12 107818632 107819051 -36463438 + L2 LINE L2 928 1391 -1923 2318 95 0 7 chr12 107819521 107819825 -36462664 + AluY SINE Alu 1 302 -9 265 311 146 0 chr12 107820095 107820198 -36462291 - L2 LINE L2 -9 3304 3187 749 239 66 86 chr12 107820245 107820492 -36461997 - MLT1J LTR MaLR -6 505 267 2030 138 0 0 chr12 107820492 107820796 -36461693 + AluY SINE Alu 1 304 -7 749 239 66 86 chr12 107820796 107820942 -36461547 - MLT1J LTR MaLR -244 267 120 2114 136 0 3 chr12 107821793 107822101 -36460388 - AluSq SINE Alu -6 307 1 406 289 44 49 chr12 107822296 107822500 -36459989 - MIR SINE MIR -40 222 20 1835 172 45 0 chr12 107823179 107823493 -36458996 + MER2 DNA MER2_type 2 329 -16 266 231 157 66 chr12 107823505 107823626 -36458863 + L2 LINE L2 3137 3268 -4 30 0 0 0 chr12 107823728 107823758 -36458731 + AT_rich Low_complexity Low_complexity 1 30 0 241 351 0 0 chr12 107823992 107824069 -36458420 - L2 LINE L2 -8 3264 3188 1647 194 14 7 chr12 107824076 107824369 -36458120 + AluJo SINE Alu 1 295 -17 353 320 103 87 chr12 107824369 107824439 -36458050 - L2 LINE L2 -20 3252 3185 2312 85 0 7 chr12 107824439 107824733 -36457756 - AluSc SINE Alu -17 292 1 353 320 103 87 chr12 107824733 107824915 -36457574 - L2 LINE L2 -87 3185 2996 973 305 92 7 chr12 107825001 107825427 -36457062 - MLT1L LTR MaLR -7 608 147 288 0 0 0 chr12 107825828 107825860 -36456629 + (CA)n Simple_repeat Simple_repeat 2 33 0 352 362 63 34 chr12 107826596 107826864 -36455625 + L3 LINE CR1 11 286 -1291 506 275 131 26 chr12 107827043 107827272 -36455217 - MIR SINE MIR -8 254 2 21 36 0 0 chr12 107827539 107827567 -36454922 + AT_rich Low_complexity Low_complexity 1 28 0 2452 90 3 0 chr12 107827621 107827931 -36454558 + AluSp SINE Alu 1 311 -2 327 239 25 101 chr12 107828136 107828295 -36454194 + MIR SINE MIR 60 206 -56 1467 158 47 47 chr12 107828461 107828516 -36453973 - L1PB4 LINE L1 0 6156 6102 2756 156 36 0 chr12 107828516 107828927 -36453562 - MSTB LTR MaLR 0 426 1 1467 158 47 47 chr12 107828927 107829167 -36453322 - L1PB4 LINE L1 -53 6103 5861 207 0 0 0 chr12 107829476 107829499 -36452990 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1893 105 81 48 chr12 107829516 107829811 -36452678 + AluSg SINE Alu 3 307 -3 1816 168 4 4 chr12 107829811 107830091 -36452398 - AluJb SINE Alu -30 282 3 290 270 265 8 chr12 107830096 107830288 -36452201 - L2 LINE L2 -257 3015 2776 * 432 296 250 0 chr12 107830279 107830451 -36452038 + MIR SINE MIR 28 242 -20 4363 144 25 88 chr12 107830609 107832130 -36450359 + pTR5 LTR ERV1 729 2606 0 2460 61 0 6 chr12 107832544 107832856 -36449633 + AluY SINE Alu 1 310 -1 519 242 56 11 chr12 107833462 107833640 -36448849 - L1ME4a LINE L1 -1 6120 5935 596 278 147 27 chr12 107833640 107833899 -36448590 - L2 LINE L2 -22 3291 3002 316 233 39 23 chr12 107833959 107834088 -36448401 - L1ME4a LINE L1 -267 5854 5724 334 333 9 0 chr12 107834318 107834426 -36448063 + L1ME3 LINE L1 5569 5677 -485 385 235 96 30 chr12 107834431 107834597 -36447892 + L1ME3 LINE L1 5978 6154 -8 1795 128 0 40 chr12 107836103 107836400 -36446089 + AluJb SINE Alu 19 303 -9 386 233 22 22 chr12 107836986 107837076 -36445413 + MER21B LTR ERV1 1 90 -773 1242 172 19 5 chr12 107837464 107837673 -36444816 + MER20 DNA MER1_type 8 219 0 2068 138 96 3 chr12 107837686 107838020 -36444469 - MLT1A1 LTR MaLR 0 365 1 814 315 14 20 chr12 107838350 107838626 -36443863 + MLT1K LTR MaLR 5 269 -346 638 258 17 96 chr12 107838674 107839104 -36443385 + MLT1H LTR MaLR 30 384 -25 943 261 126 51 chr12 107839132 107839522 -36442967 + LTR33A LTR ERVL 3 421 -102 610 317 92 28 chr12 107839593 107839877 -36442612 + MLT1K LTR MaLR 269 570 -18 1649 223 87 28 chr12 107840081 107840517 -36441972 - MLT1C LTR MaLR 0 467 6 537 30 0 0 chr12 107841344 107841411 -36441078 + (CA)n Simple_repeat Simple_repeat 2 68 0 2050 90 14 4 chr12 107841460 107841770 -36440719 + AluY SINE Alu 1 313 0 23 0 0 0 chr12 107841770 107841793 -36440696 + AT_rich Low_complexity Low_complexity 1 23 0 2273 180 22 0 chr12 107842427 107842828 -36439661 - LOR1b LTR ERV1 0 461 52 268 247 301 0 chr12 107842927 107843020 -36439469 + L2 LINE L2 3185 3305 -8 235 281 73 56 chr12 107843008 107843186 -36439303 + L2 LINE L2 2218 2398 -916 * 228 320 151 30 chr12 107843321 107843626 -36438863 + L2 LINE L2 2647 2984 -329 233 310 8 47 chr12 107843864 107843960 -36438529 - MIR3 SINE MIR -41 167 76 2306 109 0 0 chr12 107843960 107844272 -36438217 + AluJb SINE Alu 1 312 0 233 310 8 47 chr12 107844272 107844304 -36438185 - MIR3 SINE MIR -132 76 44 40 0 0 0 chr12 107844320 107844360 -36438129 + AT_rich Low_complexity Low_complexity 1 40 0 216 0 0 0 chr12 107844482 107844506 -36437983 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 186 43 0 0 chr12 107845114 107845137 -36437352 + (CGG)n Simple_repeat Simple_repeat 2 24 0 609 246 11 56 chr12 107846449 107846628 -36435861 + MIR SINE MIR 63 233 -29 249 246 18 0 chr12 107846740 107846797 -36435692 + MIR SINE MIR 183 240 -22 337 301 48 54 chr12 107846807 107846906 -36435583 - MIR SINE MIR -13 249 150 2317 70 7 3 chr12 107846906 107847207 -36435282 - AluSc SINE Alu -7 302 1 337 301 48 54 chr12 107847207 107847273 -36435216 - MIR SINE MIR -112 150 85 491 271 51 17 chr12 107848542 107848719 -36433770 - L1MC4a LINE L1 -1893 5915 5733 570 266 181 54 chr12 107849195 107849717 -36432772 - L2 LINE L2 -219 3053 2459 24 0 0 0 chr12 107853369 107853393 -36429096 + AT_rich Low_complexity Low_complexity 1 24 0 2314 160 32 16 chr12 107853451 107853894 -36428595 - LTR7 LTR ERV1 0 450 1 937 227 80 39 chr12 107854115 107854401 -36428088 - MLT1D LTR MaLR 0 505 208 247 207 0 0 chr12 107854405 107854463 -36428026 - MLT1D LTR MaLR -270 235 178 908 86 16 0 chr12 107854473 107854601 -36427888 - MER41A LTR ERV1 -28 526 397 885 172 103 0 chr12 107854598 107854772 -36427717 - MLT1D LTR MaLR -313 192 1 * 282 116 0 0 chr12 107854921 107854964 -36427525 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 1620 116 17 13 chr12 107854966 107855198 -36427291 - AluSc SINE Alu -76 233 1 621 273 107 8 chr12 107855767 107856009 -36426480 + L2 LINE L2 2055 2320 -994 1999 135 3 3 chr12 107856009 107856298 -36426191 - AluSc SINE Alu -18 291 3 2286 86 0 35 chr12 107856313 107856626 -36425863 - AluY SINE Alu -7 304 3 2192 95 0 0 chr12 107856709 107856983 -36425506 - AluSg SINE Alu -36 274 1 249 273 102 74 chr12 107857039 107857295 -36425194 + L2 LINE L2 2399 2661 -653 251 284 12 49 chr12 107857467 107857548 -36424941 + L2 LINE L2 2695 2772 -542 7800 208 5 14 chr12 107857558 107859200 -36423289 + L1PB1 LINE L1 2540 4166 -1980 2418 67 0 0 chr12 107859200 107859507 -36422982 + AluY SINE Alu 1 307 0 7800 208 5 14 chr12 107859507 107859618 -36422871 + L1PB1 LINE L1 4166 4277 -1869 4567 60 15 16 chr12 107859619 107860646 -36421843 - MER11A LTR ERVK 0 1266 1 5850 164 15 16 chr12 107860650 107862521 -36419968 + L1PB1 LINE L1 4279 6150 -1 333 282 63 35 chr12 107862538 107862680 -36419809 + L2 LINE L2 3150 3295 -18 554 282 111 6 chr12 107863062 107863243 -36419246 - MIR SINE MIR -12 250 51 28 29 0 0 chr12 107865496 107865531 -36416958 + AT_rich Low_complexity Low_complexity 1 35 0 282 57 0 0 chr12 107866578 107866613 -36415876 + U2 snRNA snRNA 1 35 -153 403 301 71 15 chr12 107867095 107867291 -36415198 + MIR SINE MIR 52 258 -4 228 234 21 0 chr12 107867357 107867404 -36415085 + CT-rich Low_complexity Low_complexity 4 51 0 235 308 0 0 chr12 107868176 107868241 -36414248 - Charlie4 DNA MER1_type -5 1956 1892 180 342 76 0 chr12 107868760 107868839 -36413650 - L2 LINE L2 -2 3311 3227 201 259 0 0 chr12 107869016 107869074 -36413415 + T-rich Low_complexity Low_complexity 2 59 0 23 0 0 0 chr12 107869392 107869415 -36413074 + AT_rich Low_complexity Low_complexity 1 23 0 2374 223 112 2 chr12 107869456 107870056 -36412433 - L1MC4 LINE L1 -139 7903 7238 774 189 83 0 chr12 107870059 107870228 -36412261 - L1MC4 LINE L1 -964 7078 6896 376 188 94 12 chr12 107870239 107870324 -36412165 - L1MC4a LINE L1 -1243 6565 6474 21 0 0 0 chr12 107870780 107870801 -36411688 + AT_rich Low_complexity Low_complexity 1 21 0 337 174 72 0 chr12 107870835 107870904 -36411585 - MER58 DNA MER1_type -31 2389 2316 * 423 206 54 0 chr12 107870901 107870993 -36411496 - MER58 DNA MER1_type -2320 100 4 231 36 0 0 chr12 107871078 107871106 -36411383 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 273 303 230 13 chr12 107871106 107871258 -36411231 - MIR SINE MIR -7 255 71 1706 162 4 18 chr12 107871369 107871647 -36410842 + AluJo SINE Alu 1 274 -38 392 311 0 37 chr12 107872015 107872150 -36410339 - L2 LINE L2 -6 3307 3178 245 291 45 104 chr12 107873266 107873514 -36408975 + MIR SINE MIR 68 235 -22 247 259 136 0 chr12 107873528 107873609 -36408880 + MIR SINE MIR 141 232 -30 22 0 0 0 chr12 107873882 107873904 -36408585 + AT_rich Low_complexity Low_complexity 1 22 0 18558 148 65 18 chr12 107873936 107878428 -36404061 - L1MA2 LINE L1 -7 7716 3440 292 114 0 0 chr12 107878428 107878472 -36404017 - U5 snRNA snRNA -72 44 1 18558 148 65 18 chr12 107878472 107879959 -36402530 - L1MA2 LINE L1 -4283 3440 2025 2121 75 43 7 chr12 107879959 107880240 -36402249 - AluY SINE Alu -20 291 1 18558 148 65 18 chr12 107880240 107881556 -36400933 - L1MA2 LINE L1 -5698 2025 16 236 259 17 0 chr12 107881561 107881619 -36400870 + L1ME4a LINE L1 5610 5668 -453 344 212 18 44 chr12 107881632 107881745 -36400744 + L1ME4a LINE L1 5719 5828 -293 1611 173 24 14 chr12 107882414 107882703 -36399786 - AluJo SINE Alu -10 302 11 2200 148 15 0 chr12 107882932 107883264 -36399225 - MER1B DNA MER1_type 0 337 1 232 195 0 0 chr12 107884224 107884265 -36398224 + MER97a DNA MER1_type? 1 41 -853 693 223 34 0 chr12 107884266 107884414 -36398075 - MER97b DNA MER1_type? -874 179 27 2373 89 0 0 chr12 107885021 107885324 -36397165 - AluY SINE Alu -8 303 1 31 26 0 0 chr12 107885552 107885590 -36396899 + AT_rich Low_complexity Low_complexity 1 38 0 2080 114 24 0 chr12 107885612 107885902 -36396587 + AluSx SINE Alu 1 297 -15 6502 197 52 21 chr12 107885964 107887851 -36394638 - L1MB7 LINE L1 -19 6165 4178 1660 152 30 79 chr12 107887851 107888179 -36394310 - AluJo SINE Alu 0 312 1 6502 197 52 21 chr12 107888179 107888807 -36393682 - L1MB7 LINE L1 -2006 4178 3571 228 314 144 31 chr12 107890392 107890621 -36391868 - L2 LINE L2 -696 2618 2364 23 0 0 0 chr12 107892855 107892878 -36389611 + AT_rich Low_complexity Low_complexity 1 23 0 315 146 0 0 chr12 107893295 107893350 -36389139 + (GA)n Simple_repeat Simple_repeat 1 55 0 482 227 158 20 chr12 107893350 107893510 -36388979 + MIR SINE MIR 6 183 -79 342 67 0 0 chr12 107894180 107894225 -36388264 + (A)n Simple_repeat Simple_repeat 1 45 0 26 30 0 0 chr12 107894452 107894485 -36388004 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr12 107894819 107894842 -36387647 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 107897125 107897149 -36385340 + AT_rich Low_complexity Low_complexity 1 24 0 2168 105 3 0 chr12 107898264 107898549 -36383940 + AluSg SINE Alu 25 310 0 2171 115 0 10 chr12 107898689 107899007 -36383482 - AluSq SINE Alu 0 316 2 2131 103 3 3 chr12 107900333 107900635 -36381854 - AluSx SINE Alu 0 302 1 218 192 0 39 chr12 107900956 107901008 -36381481 + MIR SINE MIR 212 261 -1 586 238 25 0 chr12 107901364 107901486 -36381003 + L2 LINE L2 3189 3313 0 260 186 23 0 chr12 107901487 107901530 -36380959 - MIR SINE MIR -57 151 108 181 176 0 0 chr12 107901888 107901922 -36380567 + L2 LINE L2 3239 3272 0 21 36 0 0 chr12 107902038 107902066 -36380423 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 107902284 107902305 -36380184 + AT_rich Low_complexity Low_complexity 1 21 0 240 372 173 0 chr12 107902590 107902816 -36379673 + L2 LINE L2 2966 3230 -42 23 33 0 0 chr12 107903135 107903165 -36379324 + AT_rich Low_complexity Low_complexity 1 30 0 216 200 0 176 chr12 107903489 107903574 -36378915 - L2 LINE L2 0 3272 3203 1326 184 10 49 chr12 107904535 107904934 -36377555 - LTR2B LTR ERV1 0 490 1 13211 114 3 5 chr12 107904934 107907557 -36374932 - Harlequin LTR ERV1 0 7458 4721 5831 32 0 1 chr12 107907558 107908235 -36374254 - L1PA4 LINE L1 -4 6151 5476 44817 44 1 0 chr12 107908251 107914408 -36368081 - L1PA4 LINE L1 0 7574 6 31372 178 10 10 chr12 107914408 107919619 -36362870 - HERVE LTR ERV1 -2603 5210 1 1779 190 114 24 chr12 107919619 107920040 -36362449 - LTR2B LTR ERV1 0 490 32 540 248 29 0 chr12 107921420 107921557 -36360932 - MIR SINE MIR -12 250 110 602 221 67 0 chr12 107921935 107922098 -36360391 - MLT1I LTR MaLR 0 409 245 406 175 50 0 chr12 107922688 107922768 -36359721 - MER91C DNA MER1_type -24 116 33 233 286 13 0 chr12 107922810 107922887 -36359602 + L2 LINE L2 2709 2786 -528 372 221 39 88 chr12 107923044 107923225 -36359264 - MLT1K LTR MaLR -3 585 414 251 228 18 0 chr12 107923459 107923516 -36358973 - MIR SINE MIR -156 106 49 23 0 0 0 chr12 107924663 107924686 -36357803 + AT_rich Low_complexity Low_complexity 1 23 0 298 248 156 0 chr12 107924716 107924825 -36357664 - L2 LINE L2 -8 3305 3180 196 290 30 10 chr12 107925157 107925257 -36357232 - L2 LINE L2 -496 2818 2717 2229 111 3 0 chr12 107925533 107925839 -36356650 - AluY SINE Alu -4 307 1 315 270 17 52 chr12 107926130 107926245 -36356244 + L2 LINE L2 3190 3300 -13 258 32 0 0 chr12 107926245 107926276 -36356213 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 273 250 0 0 chr12 107926346 107926418 -36356071 - L2 LINE L2 0 3272 3201 815 304 59 17 chr12 107926606 107927066 -36355423 + L1ME3A LINE L1 5474 5952 -218 701 177 9 0 chr12 107927122 107927235 -36355254 - MER81 DNA DNA 0 114 1 213 94 0 0 chr12 107927651 107927683 -36354806 + (CA)n Simple_repeat Simple_repeat 2 33 0 373 319 101 27 chr12 107927819 107928007 -36354482 + MIR SINE MIR 31 232 -30 22 0 0 0 chr12 107928032 107928054 -36354435 + AT_rich Low_complexity Low_complexity 1 22 0 226 236 139 14 chr12 107929091 107929235 -36353254 - L1MEd LINE L1 -3936 2604 2443 392 278 106 35 chr12 107929711 107930135 -36352354 - L1MEd LINE L1 -908 1993 1358 329 288 58 29 chr12 107930811 107930950 -36351539 + MIR SINE MIR 117 259 -3 255 368 0 0 chr12 107931056 107931173 -36351316 - L2 LINE L2 -189 3083 2967 608 267 37 0 chr12 107931496 107931687 -36350802 + MIR SINE MIR 52 249 -13 216 213 66 82 chr12 107931691 107931813 -36350676 - L2 LINE L2 -820 2494 2375 409 278 38 23 chr12 107932385 107932518 -36349971 - MIR SINE MIR -108 154 20 477 130 76 11 chr12 107933132 107933224 -36349265 + MER4A LTR ERV1 1 98 -566 1856 120 157 82 chr12 107933224 107933600 -36348889 + MER4A LTR ERV1 261 664 0 2407 81 10 7 chr12 107933808 107934117 -36348372 + AluSg SINE Alu 1 310 0 2121 76 69 14 chr12 107934231 107934519 -36347970 + AluY SINE Alu 1 304 -7 1552 125 82 107 chr12 107935671 107935948 -36346541 - AluSx SINE Alu 0 424 157 2120 110 0 3 chr12 107935948 107936238 -36346251 - AluSx SINE Alu -23 289 1 1552 125 82 107 chr12 107936238 107936392 -36346097 - AluSx SINE Alu -267 157 1 240 35 0 0 chr12 107936724 107936753 -36345736 + (TG)n Simple_repeat Simple_repeat 2 30 0 1741 157 31 14 chr12 107936753 107937046 -36345443 - AluJb SINE Alu -14 298 1 374 292 39 81 chr12 107937597 107937905 -36344584 - L1M4 LINE L1 -1534 4612 4318 27 0 0 0 chr12 107937935 107937962 -36344527 + AT_rich Low_complexity Low_complexity 1 27 0 1944 70 30 94 chr12 107938605 107938931 -36343558 - AluSg SINE Alu 0 307 1 225 196 0 0 chr12 107939176 107939222 -36343267 + (TA)n Simple_repeat Simple_repeat 1 46 0 2102 121 17 3 chr12 107939258 107939556 -36342933 + AluSx SINE Alu 1 302 -10 1936 112 0 44 chr12 107939661 107939956 -36342533 + AluSx SINE Alu 31 312 0 26 50 0 0 chr12 107939958 107939998 -36342491 + AT_rich Low_complexity Low_complexity 1 40 0 1392 234 53 55 chr12 107940753 107941265 -36341224 - L1MC4 LINE L1 -1 8041 7531 249 181 74 63 chr12 107941802 107941964 -36340525 + MLT1K LTR MaLR 379 585 -3 211 282 48 19 chr12 107942068 107942171 -36340318 + MIR SINE MIR 149 254 -8 232 279 70 12 chr12 107944595 107944681 -36337808 + MIR SINE MIR 64 154 -108 443 48 16 0 chr12 107945413 107945475 -36337014 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 427 249 46 83 chr12 107945562 107945803 -36336686 + MIR SINE MIR 6 237 -25 2304 101 0 23 chr12 107946206 107946512 -36335977 + AluSx SINE Alu 1 299 -13 353 224 88 40 chr12 107946514 107946639 -36335850 + MIR SINE MIR 61 191 -71 180 147 29 0 chr12 107947161 107947195 -36335294 - L2 LINE L2 -12 3301 3267 475 178 115 19 chr12 107947288 107947453 -36335036 + MER69 DNA AcHobo 1 2525 -1 2649 100 19 3 chr12 107947636 107948005 -36334484 + THE1C LTR MaLR 1 375 0 504 241 19 0 chr12 107948284 107948392 -36334097 - MER81 DNA DNA 0 114 5 418 200 11 21 chr12 107948453 107948548 -36333941 + L2 LINE L2 2260 2353 -961 * 984 258 65 12 chr12 107948547 107948884 -36333605 + L2 LINE L2 2926 3280 -33 2390 95 0 0 chr12 107948913 107949209 -36333280 - AluY SINE Alu -15 296 1 1486 242 19 56 chr12 107949215 107949831 -36332658 + L2 LINE L2 2456 3052 -261 279 286 105 0 chr12 107949999 107950104 -36332385 + L2 LINE L2 3197 3312 -1 30 27 0 0 chr12 107950239 107950276 -36332213 + AT_rich Low_complexity Low_complexity 1 37 0 1244 69 25 6 chr12 107950561 107950720 -36331769 + AluY SINE Alu 133 294 -17 1790 112 10 83 chr12 107950839 107951152 -36331337 + AluJo SINE Alu 1 290 -22 388 244 84 8 chr12 107951242 107951373 -36331116 - MIR SINE MIR -21 241 101 1218 226 85 65 chr12 107951374 107951728 -36330761 + LTR16C LTR ERVL 1 361 -130 278 369 0 0 chr12 107951786 107951870 -36330619 - MIR SINE MIR -164 98 15 525 323 25 4 chr12 107952701 107952936 -36329553 + L2 LINE L2 2821 3060 -253 256 309 0 0 chr12 107952986 107953054 -36329435 + L2 LINE L2 3241 3308 -5 26 50 0 0 chr12 107953228 107953268 -36329221 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr12 107953498 107953520 -36328969 + AT_rich Low_complexity Low_complexity 1 22 0 220 217 0 0 chr12 107953724 107953770 -36328719 - MIR SINE MIR -1 261 216 258 340 78 7 chr12 107954112 107954265 -36328224 + L2 LINE L2 2897 3060 -212 312 305 19 9 chr12 107954315 107954420 -36328069 + MLT1K LTR MaLR 1 106 -482 605 256 127 63 chr12 107954422 107954863 -36327626 + MLT1K LTR MaLR 5 473 -3 207 85 106 0 chr12 107954901 107954948 -36327541 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 271 303 79 0 chr12 107954986 107955075 -36327414 + L2 LINE L2 3134 3229 -43 872 180 31 10 chr12 107955362 107955556 -36326933 - MIR SINE MIR -2 260 63 2881 92 3 0 chr12 107955956 107956327 -36326162 - THE1C LTR MaLR -3 372 1 9952 111 56 48 chr12 107956327 107957894 -36324595 - THE1C-int LTR MaLR 0 1580 1 2795 108 8 0 chr12 107957894 107958264 -36324225 - THE1C LTR MaLR 0 375 3 1378 228 27 21 chr12 107958520 107958853 -36323636 + MLT1J LTR MaLR 1 335 -176 22 0 0 0 chr12 107959028 107959050 -36323439 + AT_rich Low_complexity Low_complexity 1 22 0 511 288 66 30 chr12 107959178 107959376 -36323113 + MER63A DNA MER1_type 2 206 -4 21 0 0 0 chr12 107960890 107960911 -36321578 + AT_rich Low_complexity Low_complexity 1 21 0 2284 93 3 3 chr12 107960977 107961277 -36321212 - AluY SINE Alu -11 300 1 672 189 157 19 chr12 107961506 107961665 -36320824 + MER5A DNA MER1_type 9 189 0 515 311 7 0 chr12 107961740 107961888 -36320601 - MIR SINE MIR -19 243 95 370 222 236 0 chr12 107962048 107962192 -36320297 - L1MC4 LINE L1 -1 8041 7864 1068 90 35 80 chr12 107962271 107962471 -36320018 - L1MA3 LINE L1 -5 6300 6110 6531 114 56 6 chr12 107962483 107963613 -36318876 - L1MA2 LINE L1 0 6304 5117 2278 134 73 32 chr12 107963618 107963646 -36318843 + MSTA LTR MaLR 1 26 -402 1868 158 166 19 chr12 107963646 107964019 -36318470 + MSTA LTR MaLR 1 428 0 2278 134 73 32 chr12 107964019 107964401 -36318088 + MSTA LTR MaLR 26 428 0 1474 150 0 4 chr12 107964401 107964654 -36317835 - L1MA2 LINE L1 -1026 5120 4869 1780 243 71 60 chr12 107964666 107964888 -36317601 - L1MC4 LINE L1 -145 7897 7679 2453 80 0 6 chr12 107964888 107965200 -36317289 - AluSg SINE Alu 0 310 1 1780 243 71 60 chr12 107965200 107965706 -36316783 - L1MC4 LINE L1 -363 7679 7161 1641 166 16 44 chr12 107965757 107966076 -36316413 - AluJb SINE Alu -2 310 1 953 133 0 0 chr12 107966076 107966211 -36316278 - AluJb SINE Alu -177 135 1 255 125 0 0 chr12 107967128 107967168 -36315321 + (TCCCC)n Simple_repeat Simple_repeat 4 43 0 * 486 193 11 33 chr12 107967166 107967347 -36315142 + CT-rich Low_complexity Low_complexity 2 178 0 1095 268 82 79 chr12 107967444 107967751 -36314738 - L1MC4a LINE L1 -943 6865 6560 2386 75 0 0 chr12 107967751 107968107 -36314382 + AluY SINE Alu 1 311 0 1095 268 82 79 chr12 107968107 107968325 -36314164 - L1MC4a LINE L1 -1248 6560 6344 2148 127 3 3 chr12 107968325 107968633 -36313856 + AluSx SINE Alu 1 308 -4 1095 268 82 79 chr12 107968633 107968915 -36313574 - L1MC4a LINE L1 -1464 6344 6055 1127 146 0 23 chr12 107968948 107969119 -36313370 - AluJb SINE Alu -13 299 133 254 152 51 13 chr12 107969119 107969198 -36313291 + (TA)n Simple_repeat Simple_repeat 2 83 0 793 149 18 0 chr12 107969220 107969334 -36313155 - AluJb SINE Alu -195 117 2 2679 227 42 11 chr12 107969335 107969997 -36312492 - L1MC4a LINE L1 -1801 6007 5325 2049 127 0 7 chr12 107971171 107971490 -36310999 + AluSx SINE Alu 5 312 0 1384 148 126 0 chr12 107971895 107972158 -36310331 - L1MB7 LINE L1 -17 6167 5872 484 156 41 82 chr12 107972169 107972291 -36310198 - L1MC2 LINE L1 -9 6335 6219 630 270 21 5 chr12 107973088 107973277 -36309212 - MIR SINE MIR 0 262 71 291 247 0 47 chr12 107973337 107973422 -36309067 + MIR3 SINE MIR 89 169 -39 1563 237 82 30 chr12 107973424 107973862 -36308627 + LTR16B LTR ERVL 1 461 -3 517 270 40 98 chr12 107974229 107974386 -36308103 + MIR SINE MIR 5 170 -92 2289 70 3 48 chr12 107974386 107974701 -36307788 - AluSp SINE Alu -12 301 1 2336 102 0 0 chr12 107974707 107975012 -36307477 - AluSg SINE Alu -5 305 1 517 270 40 98 chr12 107975012 107975121 -36307368 + MIR SINE MIR 175 262 0 2193 125 0 0 chr12 107975131 107975428 -36307061 - AluSx SINE Alu -10 302 6 332 266 44 38 chr12 107976351 107976509 -36305980 - MLT1J LTR MaLR -347 164 6 22 56 0 0 chr12 107977207 107977243 -36305246 + AT_rich Low_complexity Low_complexity 1 36 0 291 190 0 0 chr12 107978066 107978124 -36304365 + CT-rich Low_complexity Low_complexity 4 61 0 437 340 21 7 chr12 107978150 107978294 -36304195 + MIR SINE MIR 24 169 -93 1037 335 44 19 chr12 107979035 107979516 -36302973 + MLT1K LTR MaLR 72 564 -24 980 237 198 68 chr12 107979516 107980001 -36302488 + MLT1H LTR MaLR 2 549 0 3012 208 53 81 chr12 107980240 107981932 -36300557 - L1M4 LINE L1 -744 5402 2872 2115 102 54 36 chr12 107981932 107982264 -36300225 - THE1B LTR MaLR 0 364 27 922 79 3 9 chr12 107982476 107982591 -36299898 - L1PA11 LINE L1 -564 5604 5492 4278 79 42 0 chr12 107982591 107983134 -36299355 + L1PA11 LINE L1 5608 6174 0 922 79 3 9 chr12 107983134 107983163 -36299326 - L1P4 LINE L1 -676 5492 5464 2335 94 0 13 chr12 107983420 107983728 -36298761 - AluY SINE Alu -7 304 1 2335 98 13 0 chr12 107983782 107984087 -36298402 - AluSx SINE Alu -3 309 1 217 302 177 0 chr12 107984218 107984314 -36298175 + MIR SINE MIR 55 167 -95 300 191 16 0 chr12 107984858 107984921 -36297568 - MLT2B1 LTR ERVL 0 520 457 302 214 12 0 chr12 107985031 107985115 -36297374 + (TA)n Simple_repeat Simple_repeat 2 86 0 2031 186 72 38 chr12 107985164 107985611 -36296878 - MLT2B1 LTR ERVL -58 462 1 28 29 0 0 chr12 107985630 107985665 -36296824 + AT_rich Low_complexity Low_complexity 1 35 0 216 254 0 0 chr12 107985935 107985990 -36296499 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 237 308 48 29 chr12 107986328 107986432 -36296057 - L2 LINE L2 -5 3267 3162 * 269 230 92 0 chr12 107986408 107986495 -36295994 - L2 LINE L2 -104 3209 3115 1217 54 0 0 chr12 107987310 107987458 -36295031 - AluY SINE Alu -9 302 155 270 268 49 54 chr12 107988156 107988314 -36294175 - MIR SINE MIR -62 146 34 310 293 150 60 chr12 107989355 107989854 -36292635 + L1M2 LINE L1 473 1016 -5833 301 244 96 35 chr12 107990147 107990321 -36292168 + MIR SINE MIR 31 212 -41 784 280 70 4 chr12 107992545 107992802 -36289687 - L2 LINE L2 -210 3103 2830 401 281 25 16 chr12 107993091 107993212 -36289277 - MIR SINE MIR -52 210 89 257 274 118 59 chr12 107993291 107993477 -36289012 + L2 LINE L2 2191 2387 -927 272 341 209 3 chr12 107993500 107993787 -36288702 - L2 LINE L2 -22 3250 2905 1402 167 33 56 chr12 107993954 107994260 -36288229 - AluJb SINE Alu -13 299 1 390 119 17 0 chr12 107994260 107994319 -36288170 + MIR SINE MIR 87 146 -62 354 366 149 0 chr12 107994428 107994649 -36287840 + L2 LINE L2 2499 2752 -562 344 327 55 32 chr12 107994820 107995040 -36287449 + L2 LINE L2 3048 3272 0 25 0 0 0 chr12 107995421 107995446 -36287043 + AT_rich Low_complexity Low_complexity 1 25 0 1077 181 22 76 chr12 107995505 107995781 -36286708 - MLT1A2 LTR MaLR 0 374 114 538 184 37 37 chr12 107996030 107996139 -36286350 - MLT1A2 LTR MaLR -265 109 1 184 302 0 0 chr12 107996194 107996247 -36286242 + L3 LINE CR1 244 296 -1281 * 260 221 0 135 chr12 107996237 107996341 -36286148 - L2 LINE L2 -25 3288 3199 195 326 109 0 chr12 107996593 107996685 -36285804 - L2 LINE L2 -9 3263 3162 2662 46 0 0 chr12 107997618 107997920 -36284569 - AluY SINE Alu -9 302 1 288 265 49 43 chr12 107998101 107998217 -36284272 + MIR SINE MIR 32 148 -60 394 211 39 19 chr12 107998414 107998518 -36283971 + L1ME3A LINE L1 6065 6170 0 397 283 20 0 chr12 107998853 107998952 -36283537 - MER5A DNA MER1_type -85 104 4 1060 276 59 43 chr12 107999329 108000007 -36282482 - L1MDa LINE L1 -3379 3161 2471 22 0 0 0 chr12 108000355 108000377 -36282112 + AT_rich Low_complexity Low_complexity 1 22 0 589 268 59 41 chr12 108000770 108000990 -36281499 + MIR SINE MIR 32 255 -7 372 294 60 47 chr12 108001093 108001328 -36281161 - L1ME3A LINE L1 -9 6161 5924 480 263 53 0 chr12 108001354 108001525 -36280964 - L1ME3A LINE L1 -208 5962 5783 677 77 0 58 chr12 108001560 108001664 -36280825 + AluSp/q SINE Alu 215 312 -1 551 271 6 18 chr12 108001667 108001833 -36280656 - MIR SINE MIR -10 252 89 359 324 49 21 chr12 108002598 108002740 -36279749 - MIR SINE MIR -96 166 21 233 328 0 0 chr12 108002835 108002893 -36279596 - L2 LINE L2 -11 3261 3204 3767 128 42 7 chr12 108003631 108004225 -36278264 - L1MC1 LINE L1 -17 6316 5702 3056 153 58 16 chr12 108004225 108004953 -36277536 - L1MC/D LINE L1 -545 5788 5023 271 297 72 36 chr12 108004996 108005134 -36277355 + MIR SINE MIR 48 190 -72 416 307 24 24 chr12 108005264 108005430 -36277059 + L2 LINE L2 2556 2721 -593 234 299 89 102 chr12 108005585 108005910 -36276579 + L2 LINE L2 2947 3267 -5 22 0 0 0 chr12 108006151 108006173 -36276316 + AT_rich Low_complexity Low_complexity 1 22 0 253 190 165 33 chr12 108006368 108006489 -36276000 + MER113 DNA MER1_type? 7 143 -378 241 193 175 0 chr12 108006549 108006606 -36275883 + MER113 DNA MER1_type? 317 383 -138 440 266 174 19 chr12 108006785 108006992 -36275497 - MIR SINE MIR -15 247 9 706 246 56 19 chr12 108008541 108008756 -36273733 - MIR SINE MIR -5 257 35 2403 166 34 9 chr12 108008849 108009296 -36273193 + MLT1C LTR MaLR 6 463 -4 648 259 134 80 chr12 108009390 108009914 -36272575 - MLT1L LTR MaLR -45 570 19 1254 211 70 32 chr12 108010960 108011302 -36271187 - L1MA9 LINE L1 -37 6275 5921 206 169 15 0 chr12 108011314 108011379 -36271110 + (TA)n Simple_repeat Simple_repeat 1 66 0 30 69 0 0 chr12 108011384 108011442 -36271047 + AT_rich Low_complexity Low_complexity 1 58 0 313 197 158 0 chr12 108011446 108011522 -36270967 - L1MA9 LINE L1 -377 5935 5848 275 219 41 27 chr12 108011738 108011811 -36270678 + MIR SINE MIR 121 194 -68 193 235 59 0 chr12 108011907 108011958 -36270531 + L2 LINE L2 3218 3271 -1 863 114 0 38 chr12 108012518 108012649 -36269840 - FLAM_A SINE Alu -7 126 1 1682 190 79 0 chr12 108012932 108013248 -36269241 + MER58B DNA MER1_type 1 341 0 234 310 48 59 chr12 108013635 108013822 -36268667 - MER5A DNA MER1_type 0 189 5 232 191 48 0 chr12 108015162 108015204 -36267285 - MER91 DNA MER1_type -152 44 1 291 114 0 0 chr12 108015254 108015298 -36267191 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 274 382 49 7 chr12 108015298 108015442 -36267047 - L2 LINE L2 -17 3255 3106 56 39 0 0 chr12 108015487 108015564 -36266925 + AT_rich Low_complexity Low_complexity 1 77 0 1380 166 0 0 chr12 108015975 108016192 -36266297 - L1PA15 LINE L1 0 6165 5949 217 321 30 72 chr12 108016257 108016494 -36265995 + L2 LINE L2 2156 2382 -932 1651 182 25 50 chr12 108016523 108016886 -36265603 - MLT1A1 LTR MaLR -1 364 11 344 216 10 0 chr12 108017162 108017259 -36265230 + CT-rich Low_complexity Low_complexity 1 98 0 778 260 89 71 chr12 108017801 108018440 -36264049 + L1MEd LINE L1 965 1635 -4494 2020 141 3 3 chr12 108018440 108018730 -36263759 + AluSx SINE Alu 1 290 -22 778 260 89 71 chr12 108018730 108018775 -36263714 + L1MEd LINE L1 1635 1678 -4451 826 176 34 7 chr12 108018813 108018986 -36263503 + MER20 DNA MER1_type 7 155 -64 1067 184 102 5 chr12 108019227 108019423 -36263066 - MER20 DNA MER1_type -4 215 1 2155 128 0 3 chr12 108019860 108020158 -36262331 + AluSg SINE Alu 1 297 -13 800 202 39 14 chr12 108020825 108021067 -36261422 - L1MCa LINE L1 -3947 2479 2287 187 0 0 0 chr12 108022076 108022097 -36260392 + MER5C DNA MER1_type 4 24 -300 358 172 153 153 chr12 108022280 108022392 -36260097 - MER5A DNA MER1_type 0 189 75 1916 147 16 38 chr12 108022392 108022711 -36259778 - AluSx SINE Alu 0 312 1 358 172 153 153 chr12 108022711 108022761 -36259728 - MER5A DNA MER1_type -113 76 27 573 278 81 50 chr12 108023110 108023408 -36259081 - LTR16A LTR ERVL 0 491 144 537 306 24 103 chr12 108023884 108024214 -36258275 - L2 LINE L2 0 3272 2969 403 288 36 36 chr12 108024204 108024343 -36258146 + MIR3 SINE MIR 24 162 -46 * 435 230 50 141 chr12 108024534 108024817 -36257672 + MER112 DNA MER1_type 4 260 0 259 296 61 0 chr12 108025104 108025202 -36257287 - MLT1I LTR MaLR -25 384 281 * 497 273 123 62 chr12 108025177 108025577 -36256912 - MLT1H LTR MaLR -103 446 23 273 346 65 9 chr12 108026351 108026458 -36256031 - L2 LINE L2 -38 3234 3122 289 371 26 42 chr12 108026491 108026755 -36255734 + L2 LINE L2 2477 2736 -578 3609 119 72 7 chr12 108026757 108027326 -36255163 + L1MB5 LINE L1 5561 6166 -8 298 321 162 50 chr12 108027509 108027811 -36254678 + L2 LINE L2 2935 3270 -2 2214 119 0 0 chr12 108028620 108028915 -36253574 - AluSg SINE Alu -15 295 1 236 325 157 15 chr12 108029002 108029276 -36253213 + L2 LINE L2 2040 2352 -962 199 250 262 12 chr12 108029872 108029956 -36252533 - L3 LINE CR1 -12 1565 1461 1403 260 82 16 chr12 108030920 108031358 -36251131 - MLT1C LTR MaLR 0 467 1 186 281 184 44 chr12 108031372 108031486 -36251003 - MIR SINE MIR -62 146 17 323 294 138 12 chr12 108032494 108032654 -36249835 - MIR SINE MIR -8 254 75 249 275 110 18 chr12 108032740 108032849 -36249640 + MIR3 SINE MIR 78 196 -12 2966 182 58 9 chr12 108033563 108034095 -36248394 - MER68 LTR ERV1 -4 558 1 622 203 8 8 chr12 108035073 108035196 -36247293 + L2 LINE L2 3187 3309 -4 495 258 54 36 chr12 108035196 108035363 -36247126 - MIR SINE MIR -60 202 33 23 0 0 0 chr12 108036177 108036200 -36246289 + AT_rich Low_complexity Low_complexity 1 23 0 5916 205 57 29 chr12 108037084 108037635 -36244854 - L1 LINE L1 -2346 5219 4685 1652 188 32 23 chr12 108037635 108037944 -36244545 - AluJo SINE Alu 0 312 1 5916 205 57 29 chr12 108037944 108038020 -36244469 - L1 LINE L1 -2880 4685 4613 2780 170 14 2 chr12 108038020 108038503 -36243986 - L1MA7 LINE L1 -12 6279 5791 5916 205 57 29 chr12 108038503 108039632 -36242857 - L1 LINE L1 -2952 4613 3401 2344 195 5 15 chr12 108039651 108040062 -36242427 - Tigger7 DNA MER2_type -324 409 3 1941 230 58 50 chr12 108040141 108040763 -36241726 - L1 LINE L1 -6393 1096 470 252 361 77 13 chr12 108040773 108040928 -36241561 + L2 LINE L2 3100 3264 -8 230 274 59 29 chr12 108041704 108041806 -36240683 + MIR SINE MIR 42 146 -62 424 301 60 27 chr12 108042449 108042632 -36239857 + MER5A DNA MER1_type 1 189 0 180 0 0 0 chr12 108043049 108043069 -36239420 + (T)n Simple_repeat Simple_repeat 1 20 0 3645 190 23 18 chr12 108043597 108044281 -36238208 - MER76 LTR ERV 0 688 1 198 135 0 27 chr12 108044490 108044527 -36237962 + L3 LINE CR1 1242 1277 -300 374 230 20 20 chr12 108044663 108044763 -36237726 + MIR SINE MIR 126 225 -37 6769 89 6 12 chr12 108044886 108046660 -36235829 - L1PA11 LINE L1 0 6174 4390 777 254 161 45 chr12 108047099 108047453 -36235036 - L1MC/D LINE L1 -2144 5664 5270 1059 247 10 10 chr12 108047477 108047777 -36234712 - AluSg SINE Alu 0 300 1 2203 81 11 3 chr12 108048747 108049032 -36233457 + AluSc SINE Alu 1 287 -22 251 228 141 87 chr12 108049036 108049128 -36233361 - MIR3 SINE MIR -31 177 81 372 308 25 8 chr12 108049531 108049651 -36232838 - L2 LINE L2 0 3272 3151 206 174 0 22 chr12 108050169 108050215 -36232274 + L2 LINE L2 2911 2955 -317 288 0 0 0 chr12 108050378 108050410 -36232079 + (TC)n Simple_repeat Simple_repeat 1 32 0 205 312 72 128 chr12 108050720 108050845 -36231644 - L2 LINE L2 -11 3261 3144 231 36 0 0 chr12 108051893 108051921 -36230568 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 364 252 8 59 chr12 108051966 108052085 -36230404 - L2 LINE L2 -94 3219 3107 398 259 43 22 chr12 108052901 108053040 -36229449 + MIR SINE MIR 12 153 -109 2449 76 3 0 chr12 108053667 108053970 -36228519 - AluSg SINE Alu 0 310 7 237 292 77 34 chr12 108054490 108054699 -36227790 - L1MC/D LINE L1 -1368 4778 4561 6024 98 51 11 chr12 108054703 108055614 -36226875 - L1PA11 LINE L1 -7 6167 5222 227 248 10 50 chr12 108055653 108055754 -36226735 - L1MC/D LINE L1 -1625 4521 4425 378 299 159 62 chr12 108056099 108056267 -36226222 - L2 LINE L2 0 3313 3163 1788 131 0 22 chr12 108056267 108056535 -36225954 + AluSx SINE Alu 35 296 -16 378 299 159 62 chr12 108056535 108057050 -36225439 - L2 LINE L2 -150 3163 2555 934 260 151 46 chr12 108057063 108057796 -36224693 - L2 LINE L2 0 3313 2510 192 273 0 0 chr12 108059120 108059186 -36223303 + (CA)n Simple_repeat Simple_repeat 2 67 0 245 341 63 24 chr12 108059199 108059325 -36223164 + L2 LINE L2 3137 3267 -5 667 235 13 0 chr12 108060547 108060700 -36221789 + Charlie2 DNA MER1_type 163 317 -2465 * 753 188 40 49 chr12 108060695 108061029 -36221460 + Charlie2 DNA MER1_type 2438 2820 -42 180 0 0 0 chr12 108061029 108061049 -36221440 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 753 188 40 49 chr12 108061049 108061091 -36221398 + Charlie2 DNA MER1_type 2820 2861 -1 608 172 0 16 chr12 108061353 108061481 -36221008 - L1MB8 LINE L1 -13 6165 6040 29 60 0 0 chr12 108062802 108062852 -36219637 + AT_rich Low_complexity Low_complexity 1 50 0 219 36 0 0 chr12 108062873 108062901 -36219588 + (TG)n Simple_repeat Simple_repeat 1 28 0 458 327 47 59 chr12 108063288 108063609 -36218880 - L2 LINE L2 -69 3203 2887 193 281 14 101 chr12 108063624 108063763 -36218726 - L2 LINE L2 -680 2634 2508 24 0 0 0 chr12 108064054 108064078 -36218411 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr12 108065284 108065314 -36217175 + AT_rich Low_complexity Low_complexity 1 30 0 317 302 111 23 chr12 108065724 108065844 -36216645 + MIR3 SINE MIR 22 163 -45 938 233 38 5 chr12 108065844 108066054 -36216435 + MER20 DNA MER1_type 3 219 0 317 302 111 23 chr12 108066054 108066105 -36216384 + MIR3 SINE MIR 163 208 0 450 154 0 0 chr12 108066122 108066200 -36216289 + (TA)n Simple_repeat Simple_repeat 2 79 0 1393 203 59 13 chr12 108068069 108068374 -36214115 - MLT1A1 LTR MaLR -1 364 46 207 363 65 16 chr12 108068379 108068503 -36213986 + L2 LINE L2 3179 3308 -5 385 281 83 0 chr12 108068568 108068664 -36213825 + L3 LINE CR1 1461 1564 -13 250 235 0 0 chr12 108068789 108068857 -36213632 - L1ME3A LINE L1 -5 6165 6098 1160 209 14 5 chr12 108068955 108069175 -36213314 + MER58A DNA MER1_type 2 223 -1 21 0 0 0 chr12 108070181 108070202 -36212287 + AT_rich Low_complexity Low_complexity 1 21 0 375 310 65 28 chr12 108070546 108070762 -36211727 + MIR SINE MIR 13 236 -26 880 244 51 0 chr12 108071086 108071303 -36211186 - MIR SINE MIR -1 261 34 280 218 355 9 chr12 108072055 108072165 -36210324 - MIR3 SINE MIR -21 187 40 2123 104 0 80 chr12 108072165 108072491 -36209998 - AluSx SINE Alu -12 300 1 2535 57 0 0 chr12 108072992 108073291 -36209198 - AluY SINE Alu -12 299 1 22 56 0 0 chr12 108073457 108073493 -36208996 + AT_rich Low_complexity Low_complexity 1 36 0 308 271 113 45 chr12 108073654 108073787 -36208702 + MIR3 SINE MIR 17 158 -50 201 132 0 0 chr12 108074120 108074158 -36208331 + (A)n Simple_repeat Simple_repeat 1 38 0 270 171 113 30 chr12 108074184 108074278 -36208211 - MER5A DNA MER1_type -54 135 6 22 0 0 0 chr12 108075005 108075027 -36207462 + AT_rich Low_complexity Low_complexity 1 22 0 1016 191 48 11 chr12 108075102 108075290 -36207199 - AluJo SINE Alu -18 294 100 1076 201 115 97 chr12 108075325 108075767 -36206722 - MER41B LTR ERV1 -36 599 150 699 143 0 0 chr12 108075811 108075916 -36206573 - AluJo SINE Alu -207 105 1 21 37 0 56 chr12 108075977 108076031 -36206458 + AT_rich Low_complexity Low_complexity 1 51 0 675 247 58 6 chr12 108077619 108077793 -36204696 + MIR SINE MIR 9 191 -71 223 254 111 40 chr12 108077920 108078046 -36204443 + L2 LINE L2 2216 2350 -964 195 42 0 0 chr12 108078121 108078145 -36204344 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 228 348 11 11 chr12 108078153 108078245 -36204244 - L2 LINE L2 -4 3268 3177 184 228 20 119 chr12 108079130 108079231 -36203258 + L2 LINE L2 3223 3313 0 235 236 0 18 chr12 108080000 108080055 -36202434 + CT-rich Low_complexity Low_complexity 2 55 0 5126 113 22 5 chr12 108080153 108080939 -36201550 - L1MC1 LINE L1 -2 6331 5533 260 390 44 0 chr12 108081977 108082113 -36200376 - L2 LINE L2 -8 3264 3123 273 365 21 29 chr12 108082300 108082538 -36199951 - L2 LINE L2 -218 3054 2819 514 271 212 30 chr12 108083772 108084144 -36198345 - L2 LINE L2 -22 3291 2852 266 237 230 17 chr12 108084260 108084380 -36198109 - MIR SINE MIR -63 145 11 188 271 0 0 chr12 108084881 108084929 -36197560 - L2 LINE L2 -4 3309 3262 181 322 82 74 chr12 108085024 108085294 -36197195 - L2 LINE L2 -176 3096 2825 1529 142 24 98 chr12 108086167 108086505 -36195984 + AluYb8 SINE Alu 1 313 -5 255 290 118 0 chr12 108087457 108087550 -36194939 - L2 LINE L2 -3 3310 3207 196 227 0 23 chr12 108088192 108088236 -36194253 + L2 LINE L2 3187 3229 -84 25 51 0 0 chr12 108091617 108091656 -36190833 + AT_rich Low_complexity Low_complexity 1 39 0 231 167 0 0 chr12 108092105 108092147 -36190342 + (TA)n Simple_repeat Simple_repeat 1 42 0 409 344 87 28 chr12 108095120 108095510 -36186979 - L1MC4a LINE L1 -1900 5908 5496 201 138 0 0 chr12 108096048 108096077 -36186412 + (CA)n Simple_repeat Simple_repeat 2 30 0 186 179 0 0 chr12 108097817 108097856 -36184633 + L2 LINE L2 3274 3312 -1 256 347 100 0 chr12 108098817 108098967 -36183522 - MIR SINE MIR -6 256 92 1973 268 125 27 chr12 108100233 108101126 -36181363 + L2 LINE L2 2315 3313 0 24 85 0 0 chr12 108101181 108101240 -36181249 + AT_rich Low_complexity Low_complexity 1 59 0 1972 102 23 8 chr12 108102305 108102561 -36179928 + AluSx SINE Alu 37 296 -16 504 317 24 44 chr12 108102705 108102954 -36179535 + MIR SINE MIR 13 256 -6 334 328 22 38 chr12 108103479 108103662 -36178827 + MIR SINE MIR 34 213 -49 522 305 2 48 chr12 108105237 108105404 -36177085 + MIR3 SINE MIR 14 175 -33 212 341 37 24 chr12 108105777 108105859 -36176630 - L3 LINE CR1 -14 1563 1481 1241 285 45 39 chr12 108108049 108108540 -36173949 - L2 LINE L2 -8 3305 2812 229 290 122 0 chr12 108108713 108108820 -36173669 + L2 LINE L2 3145 3264 -8 246 295 33 0 chr12 108109804 108109865 -36172624 - L2 LINE L2 -36 3277 3215 1628 36 0 0 chr12 108109876 108110069 -36172420 - L1PA5 LINE L1 -8 6146 5954 801 255 78 41 chr12 108110718 108110961 -36171528 - MIR SINE MIR 0 262 11 921 123 0 14 chr12 108111020 108111158 -36171331 + FLAM_C SINE Alu 1 136 -7 611 163 0 0 chr12 108111168 108111266 -36171223 + FRAM SINE Alu 69 166 -10 754 112 0 0 chr12 108111671 108111778 -36170711 + AluSg/x SINE Alu 196 302 -8 1095 231 83 15 chr12 108112736 108113134 -36169355 + HsTC2 DNA Tc2 1282 1882 -16 213 39 0 0 chr12 108113649 108113675 -36168814 + (TAA)n Simple_repeat Simple_repeat 2 27 0 430 254 16 32 chr12 108113964 108114090 -36168399 - MIR SINE MIR -119 143 20 276 266 75 21 chr12 108114143 108114237 -36168252 - L3 LINE CR1 -276 1301 1203 953 242 154 23 chr12 108114864 108115207 -36167282 - L2 LINE L2 0 3313 2926 255 61 0 0 chr12 108115922 108115955 -36166534 + (TG)n Simple_repeat Simple_repeat 1 33 0 1511 221 13 43 chr12 108116080 108116456 -36166033 - MLT1A1 LTR MaLR 0 365 1 214 320 101 16 chr12 108116607 108116776 -36165713 + MIR SINE MIR 5 260 -2 288 0 0 0 chr12 108117513 108117545 -36164944 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 974 323 105 39 chr12 108117550 108118802 -36163687 - L2 LINE L2 -18 3295 1730 293 188 59 79 chr12 108118988 108119089 -36163400 + MLT1K LTR MaLR 436 534 -54 190 318 114 0 chr12 108119356 108119444 -36163045 - MIR3 SINE MIR -21 187 90 517 320 82 14 chr12 108119475 108119694 -36162795 + MIR SINE MIR 19 252 -10 454 140 131 0 chr12 108119840 108119947 -36162542 - L1MD1 LINE L1 -17 6225 6105 209 264 154 0 chr12 108120105 108120196 -36162293 + MIR SINE MIR 61 165 -97 456 319 75 86 chr12 108120380 108120765 -36161724 + L2 LINE L2 2892 3272 0 2466 50 0 0 chr12 108121001 108121284 -36161205 - AluY SINE Alu -16 295 13 474 274 92 26 chr12 108121917 108122070 -36160419 - MER5B DNA MER1_type -15 163 1 213 366 114 8 chr12 108122498 108122621 -36159868 + L2 LINE L2 3137 3272 0 279 314 101 28 chr12 108123084 108123332 -36159157 - L1MC/D LINE L1 -1967 5824 5559 23 33 0 0 chr12 108123650 108123680 -36158809 + AT_rich Low_complexity Low_complexity 1 30 0 461 277 117 33 chr12 108124408 108124953 -36157536 - L1ME4a LINE L1 -265 5856 5266 852 277 117 30 chr12 108125200 108125654 -36156835 - L2 LINE L2 -153 3160 2671 457 232 74 47 chr12 108125872 108126062 -36156427 - MLT1J LTR MaLR -74 437 243 659 280 28 13 chr12 108126500 108127130 -36155359 - L1MC/D LINE L1 -698 5455 4712 272 241 51 29 chr12 108127569 108127706 -36154783 - L1P LINE L1 -4167 1979 1840 333 275 72 50 chr12 108127933 108128155 -36154334 - L1MC/D LINE L1 -4914 1205 979 344 403 83 32 chr12 108129293 108129702 -36152787 - L2 LINE L2 -8 3264 2835 232 289 10 52 chr12 108130404 108130501 -36151988 - L2 LINE L2 -767 2547 2455 342 301 239 14 chr12 108130893 108131106 -36151383 - MIR SINE MIR 0 262 2 1603 168 105 0 chr12 108131631 108131946 -36150543 - MER7A DNA MER2_type 0 346 1 886 265 78 50 chr12 108132712 108133033 -36149456 + MLT1I LTR MaLR 80 409 0 220 300 82 12 chr12 108133230 108133397 -36149092 + L2 LINE L2 3143 3300 -13 333 256 217 31 chr12 108134173 108134302 -36148187 - L2 LINE L2 0 3313 3161 452 233 0 0 chr12 108134302 108134388 -36148101 - Tigger3b DNA MER2_type 0 1231 1146 589 137 0 0 chr12 108134388 108134483 -36148006 - LTR12 LTR ERV1 -5 709 615 310 198 33 22 chr12 108134485 108134576 -36147913 - LTR30 LTR ERV1 -79 643 552 1204 140 208 0 chr12 108134576 108134812 -36147677 - LTR12 LTR ERV1 -429 285 1 4692 110 53 5 chr12 108134814 108135593 -36146896 - Tigger3b DNA MER2_type -79 1152 337 30 0 0 0 chr12 108135593 108135623 -36146866 + AT_rich Low_complexity Low_complexity 1 30 0 761 150 0 39 chr12 108135626 108135753 -36146736 - FLAM_A SINE Alu -19 123 2 2055 144 9 0 chr12 108135758 108135838 -36146651 - Tigger3b DNA MER2_type -895 336 258 2282 113 7 0 chr12 108135838 108136147 -36146342 - AluSq SINE Alu -2 311 1 2055 144 9 0 chr12 108136147 108136399 -36146090 - Tigger3b DNA MER2_type -973 258 1 655 263 113 62 chr12 108136400 108136922 -36145567 - L2 LINE L2 -157 3156 2587 328 290 0 32 chr12 108136915 108137008 -36145481 + L2 LINE L2 3001 3090 -182 * 996 240 39 71 chr12 108137017 108137426 -36145063 - MER97c DNA MER1_type? -694 396 1 854 257 102 93 chr12 108137471 108137911 -36144578 - MLT1K LTR MaLR -112 476 33 4278 57 124 0 chr12 108138218 108138800 -36143689 - L1PA8 LINE L1 -7 6165 5512 1889 61 24 0 chr12 108138801 108139182 -36143307 + L1PA8 LINE L1 5106 5492 -662 886 274 159 16 chr12 108139212 108139664 -36142825 - LTR33 LTR ERVL 0 521 5 577 286 26 51 chr12 108140088 108140361 -36142128 - ERVL LTR ERVL -733 5031 4766 341 263 34 25 chr12 108140619 108140737 -36141752 - ERVL LTR ERVL -3184 2580 2462 266 105 0 0 chr12 108140773 108140811 -36141678 - MLT2B1 LTR ERVL 0 397 360 1096 224 137 36 chr12 108140832 108141114 -36141375 - MLT2B1 LTR ERVL -127 393 141 192 40 0 0 chr12 108141114 108141139 -36141350 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 207 0 0 0 chr12 108141138 108141161 -36141328 + (CA)n Simple_repeat Simple_repeat 1 23 0 1096 224 137 36 chr12 108141139 108141235 -36141254 - MLT2B1 LTR ERVL -379 141 1 1183 318 67 5 chr12 108141254 108141821 -36140668 - ERVL LTR ERVL -3357 2407 1806 607 215 31 52 chr12 108142327 108142518 -36139971 - MER58C DNA MER1_type -26 189 3 288 189 67 56 chr12 108142853 108142943 -36139546 - ERVL LTR ERVL -4839 925 835 1878 155 0 36 chr12 108145130 108145459 -36137030 - MLT1A1 LTR MaLR -39 326 10 189 0 0 0 chr12 108145655 108145676 -36136813 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 186 348 14 14 chr12 108145676 108145745 -36136744 - L2 LINE L2 -17 3255 3187 2104 131 134 11 chr12 108146355 108146736 -36135753 + MSTA LTR MaLR 1 428 0 9096 168 26 6 chr12 108146738 108148037 -36134452 + MSTA-int LTR MaLR 3 1342 -309 2144 148 0 0 chr12 108148037 108148347 -36134142 - AluSx SINE Alu -2 310 1 9096 168 26 6 chr12 108148347 108148664 -36133825 + MSTA-int LTR MaLR 1342 1651 0 856 99 167 0 chr12 108148665 108148827 -36133662 + MSTA LTR MaLR 3 191 -237 525 212 190 11 chr12 108148842 108149026 -36133463 - MLT1J2 LTR MaLR -221 229 13 191 262 66 33 chr12 108149126 108149187 -36133302 - L2 LINE L2 -13 3259 3197 * 1124 249 299 37 chr12 108149164 108149513 -36132976 - L2 LINE L2 -726 2588 2332 745 270 6 6 chr12 108149513 108149691 -36132798 + MER45A DNA AcHobo 1 178 0 1124 249 299 37 chr12 108149691 108150210 -36132279 - L2 LINE L2 -982 2332 1492 1409 187 4 0 chr12 108150210 108150472 -36132017 - L1 LINE L1 -1218 4928 4666 2630 135 2 29 chr12 108150472 108150951 -36131538 + L1MA7 LINE L1 5813 6279 -12 522 266 182 42 chr12 108150968 108151325 -36131164 - L2 LINE L2 -1806 1508 1102 350 319 142 0 chr12 108151307 108151448 -36131041 - MIR SINE MIR -99 163 3 * 215 368 72 48 chr12 108151749 108151874 -36130615 - L2 LINE L2 -16 3256 3129 210 262 202 0 chr12 108153008 108153092 -36129397 + L2 LINE L2 3208 3308 -5 244 348 56 0 chr12 108153157 108153246 -36129243 + L2 LINE L2 3168 3261 -11 189 250 21 0 chr12 108153269 108153317 -36129172 - L2 LINE L2 -2 3311 3263 569 261 195 0 chr12 108153836 108154051 -36128438 - MIR SINE MIR -3 259 3 823 29 0 0 chr12 108154523 108154625 -36127864 - L1PA4 LINE L1 -215 5939 5838 1701 34 0 0 chr12 108154631 108154826 -36127663 + L1PA4 LINE L1 5949 6152 -3 642 253 7 13 chr12 108155107 108155257 -36127232 + MIR3 SINE MIR 45 193 -15 340 364 8 0 chr12 108155430 108155551 -36126938 + MIR SINE MIR 51 172 -90 552 287 122 30 chr12 108155617 108155847 -36126642 - MIR SINE MIR 0 262 12 616 267 68 0 chr12 108155933 108156079 -36126410 - MIR SINE MIR -90 172 17 2043 112 0 7 chr12 108156208 108156532 -36125957 - AluSx SINE Alu 0 322 1 908 206 57 0 chr12 108156822 108157016 -36125473 - MER58A DNA MER1_type -18 206 2 1674 191 99 60 chr12 108158044 108158234 -36124255 - MLT1D LTR MaLR 0 505 324 2146 123 0 0 chr12 108158234 108158526 -36123963 - AluSx SINE Alu -20 292 1 1674 191 99 60 chr12 108158526 108158821 -36123668 - MLT1D LTR MaLR -181 324 1 877 245 37 17 chr12 108159005 108159246 -36123243 + MIR SINE MIR 17 262 0 222 367 57 13 chr12 108159538 108159696 -36122793 + L2 LINE L2 2454 2618 -696 1213 186 23 14 chr12 108160150 108160371 -36122118 + MER58A DNA MER1_type 1 223 -1 376 252 162 0 chr12 108161151 108161262 -36121227 + L2 LINE L2 3185 3313 0 805 254 141 40 chr12 108161801 108162270 -36120219 - LTR33 LTR ERVL -5 516 1 226 175 79 32 chr12 108162270 108162333 -36120156 - MIR3 SINE MIR -42 166 101 192 40 0 0 chr12 108162403 108162428 -36120061 + (TTA)n Simple_repeat Simple_repeat 3 27 0 4973 37 0 0 chr12 108162428 108163017 -36119472 - L1PA3 LINE L1 -18 6137 5549 2466 30 17 0 chr12 108163017 108163340 -36119149 + L1PA3 LINE L1 5236 5563 -591 200 182 18 36 chr12 108163390 108163445 -36119044 + (TGAA)n Simple_repeat Simple_repeat 3 56 0 303 241 109 44 chr12 108163445 108163582 -36118907 - L1ME LINE L1 -267 5854 5709 287 347 83 26 chr12 108163616 108163809 -36118680 - MIR SINE MIR -1 261 58 366 218 40 20 chr12 108163880 108163981 -36118508 - L1ME LINE L1 -421 5700 5598 5401 148 6 34 chr12 108164149 108165104 -36117385 - L1MC1 LINE L1 0 6333 5405 35 24 0 0 chr12 108165108 108165150 -36117339 + AT_rich Low_complexity Low_complexity 1 42 0 3026 164 31 35 chr12 108165157 108165805 -36116684 - L1MA8 LINE L1 -5 6286 5642 1154 206 91 52 chr12 108166064 108166394 -36116095 + MER2 DNA MER2_type 2 344 0 206 250 304 18 chr12 108166448 108166560 -36115929 - L2 LINE L2 -5 3308 3165 274 284 9 37 chr12 108167151 108167260 -36115229 - MLT1H LTR MaLR -387 162 57 2468 22 0 0 chr12 108168250 108168525 -36113964 + AluYa5 SINE Alu 36 310 -1 2355 95 0 3 chr12 108169090 108169394 -36113095 - AluSq SINE Alu -10 303 1 22 0 0 0 chr12 108169398 108169420 -36113069 + AT_rich Low_complexity Low_complexity 1 22 0 1217 202 80 36 chr12 108169645 108169981 -36112508 + MLT1D LTR MaLR 1 351 -154 424 236 164 14 chr12 108170045 108170185 -36112304 + MLT1C LTR MaLR 345 467 0 849 279 58 0 chr12 108170388 108170628 -36111861 - MIR SINE MIR -6 256 3 356 279 98 22 chr12 108171554 108171737 -36110752 + MIR SINE MIR 51 247 -15 21 82 0 0 chr12 108172120 108172169 -36110320 + AT_rich Low_complexity Low_complexity 1 49 0 546 248 33 20 chr12 108173369 108173522 -36108967 - MIR SINE MIR -74 188 34 205 224 0 20 chr12 108173541 108173590 -36108899 - MIR SINE MIR -39 223 176 285 261 0 0 chr12 108173725 108173813 -36108676 + CT-rich Low_complexity Low_complexity 3 90 0 2053 46 8 8 chr12 108173813 108174102 -36108387 - L1PA5 LINE L1 0 6154 5890 1260 39 0 0 chr12 108174103 108174256 -36108233 + L1PA5 LINE L1 5752 5904 -250 259 178 0 0 chr12 108174405 108174450 -36108039 + L2 LINE L2 3269 3313 0 544 187 22 88 chr12 108175645 108175827 -36106662 - L1MC5 LINE L1 -45 7916 7747 22 0 0 0 chr12 108176245 108176267 -36106222 + AT_rich Low_complexity Low_complexity 1 22 0 637 274 48 35 chr12 108176431 108176668 -36105821 + MIR SINE MIR 7 241 -21 14598 80 3 11 chr12 108178492 108180907 -36101582 - L1P3 LINE L1 -419 5735 3345 21 0 0 0 chr12 108181040 108181061 -36101428 + AT_rich Low_complexity Low_complexity 1 21 0 6016 269 128 34 chr12 108181111 108183774 -36098715 - L2 LINE L2 -157 3156 242 410 372 69 37 chr12 108183917 108184350 -36098139 + L2 LINE L2 2811 3257 -15 553 344 71 19 chr12 108184372 108184680 -36097809 - L3 LINE CR1 -238 1339 1016 2031 92 54 7 chr12 108184831 108185126 -36097363 + AluSp SINE Alu 5 313 0 22 99 0 0 chr12 108185229 108185300 -36097189 + AT_rich Low_complexity Low_complexity 1 71 0 274 253 35 35 chr12 108185788 108185875 -36096614 - LTR67 LTR ERVL -3 554 468 458 301 20 46 chr12 108186484 108186637 -36095852 + MIR SINE MIR 25 173 -89 313 164 0 0 chr12 108186638 108186693 -36095796 - MER53 DNA DNA 0 189 135 360 108 78 108 chr12 108186773 108186875 -36095614 + MER53 DNA DNA 91 189 0 673 279 63 40 chr12 108187836 108188058 -36094431 - MIR SINE MIR 0 262 36 349 280 176 0 chr12 108188722 108188847 -36093642 - MIR SINE MIR -71 191 45 2197 125 3 0 chr12 108188862 108189173 -36093316 + AluSx SINE Alu 1 312 0 870 126 0 0 chr12 108189178 108189305 -36093184 + AluSg/x SINE Alu 179 305 -7 24 0 0 0 chr12 108189974 108189998 -36092491 + AT_rich Low_complexity Low_complexity 1 24 0 1319 143 50 4 chr12 108190062 108190300 -36092189 + Tigger7 DNA MER2_type 2233 2481 -6 191 302 23 0 chr12 108190315 108190358 -36092131 - MIR SINE MIR -166 96 53 1664 178 13 26 chr12 108191438 108191747 -36090742 - AluJo SINE Alu -7 305 1 213 350 154 8 chr12 108192399 108192516 -36089973 - MIR SINE MIR -116 146 13 193 288 0 45 chr12 108193065 108193131 -36089358 - L2 LINE L2 -16 3256 3194 566 156 21 10 chr12 108193524 108193620 -36088869 + AluJb SINE Alu 200 296 -16 1636 196 4 4 chr12 108194678 108194959 -36087530 + AluJb SINE Alu 9 289 -23 249 279 36 43 chr12 108194976 108195116 -36087373 - L1ME4a LINE L1 -46 6075 5937 6670 134 63 3 chr12 108195116 108196278 -36086211 + Tigger3b DNA MER2_type 1 1231 0 417 86 0 0 chr12 108196295 108196353 -36086136 + (TG)n Simple_repeat Simple_repeat 1 58 0 476 44 0 15 chr12 108196353 108196421 -36086068 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 309 183 37 24 chr12 108196433 108196515 -36085974 - L1ME4a LINE L1 -235 5886 5804 240 367 11 0 chr12 108196886 108196976 -36085513 + MIR SINE MIR 38 128 -80 462 285 104 0 chr12 108197493 108197637 -36084852 - MIR SINE MIR -13 249 91 400 215 66 58 chr12 108197734 108197855 -36084634 - L2 LINE L2 0 3313 3192 7229 51 0 3 chr12 108199761 108200845 -36081644 - L1PA6 LINE L1 0 6154 5072 261 279 88 0 chr12 108200930 108200998 -36081491 - MIR SINE MIR -90 172 99 1206 54 0 0 chr12 108201965 108202114 -36080375 - L1PA7 LINE L1 -181 5991 5843 1443 18 12 0 chr12 108202114 108202280 -36080209 + L1PA7 LINE L1 5985 6154 0 581 169 0 8 chr12 108202377 108202495 -36079994 + (TA)n Simple_repeat Simple_repeat 2 118 0 221 339 161 17 chr12 108202553 108202727 -36079762 - MIR SINE MIR -10 252 54 210 148 56 130 chr12 108203037 108203091 -36079398 - L2 LINE L2 -30 3242 3193 294 50 0 0 chr12 108203220 108203260 -36079229 + (TG)n Simple_repeat Simple_repeat 2 41 0 259 262 48 39 chr12 108203607 108203710 -36078779 + L2 LINE L2 3209 3312 -1 351 219 325 0 chr12 108204892 108205006 -36077483 + MIR SINE MIR 103 253 -9 423 273 55 9 chr12 108205092 108205202 -36077287 - MIR SINE MIR -128 134 20 4596 87 30 4 chr12 108205603 108206278 -36076211 - L1MA3 LINE L1 0 6305 5614 3421 145 3 5 chr12 108206511 108207191 -36075298 - L1MA3 LINE L1 -743 5403 4768 324 300 250 0 chr12 108208091 108208271 -36074218 + MIR SINE MIR 24 248 -14 11722 58 17 3 chr12 108209738 108212054 -36070435 - L1PA6 LINE L1 0 6154 3813 293 285 49 41 chr12 108212275 108212398 -36070091 + L2 LINE L2 3144 3267 -5 1088 189 28 32 chr12 108212873 108213090 -36069399 - MER20 DNA MER1_type -1 218 3 316 298 226 11 chr12 108213398 108213579 -36068910 - MIR SINE MIR -6 256 37 180 271 21 0 chr12 108213734 108213782 -36068707 - MIR3 SINE MIR -1 207 159 590 235 115 46 chr12 108213808 108214068 -36068421 - L2 LINE L2 0 3313 3036 235 232 36 0 chr12 108214133 108214189 -36068300 + L2 LINE L2 3251 3308 -5 1775 213 138 9 chr12 108214244 108214686 -36067803 - MLT1D LTR MaLR 0 505 7 270 315 9 27 chr12 108214912 108215023 -36067466 + L2 LINE L2 3164 3272 0 23 0 0 0 chr12 108215548 108215571 -36066918 + AT_rich Low_complexity Low_complexity 1 23 0 327 278 31 0 chr12 108216925 108217022 -36065467 - MIR3 SINE MIR -28 180 81 316 226 22 66 chr12 108217703 108217840 -36064649 - MER112 DNA MER1_type -101 159 29 831 297 62 49 chr12 108218000 108218488 -36064001 - L1ME3A LINE L1 -207 5963 5470 2303 82 0 0 chr12 108218582 108218903 -36063586 - AluSg SINE Alu 0 324 4 21 0 0 0 chr12 108220986 108221007 -36061482 + AT_rich Low_complexity Low_complexity 1 21 0 3497 269 162 22 chr12 108222448 108223932 -36058557 - L2 LINE L2 -5 3308 1570 583 258 26 26 chr12 108223913 108224103 -36058386 + L2 LINE L2 1411 1600 -1714 * 315 276 162 0 chr12 108224348 108224453 -36058036 - MIR SINE MIR -105 157 36 1883 72 155 40 chr12 108224520 108224797 -36057692 + AluY SINE Alu 1 309 -2 240 298 75 32 chr12 108224911 108225005 -36057484 + MIR SINE MIR 31 128 -134 723 213 66 5 chr12 108225104 108225315 -36057174 - MER113 DNA MER1_type? -277 244 21 2335 216 53 68 chr12 108225339 108225941 -36056548 + MLT1E LTR MaLR 1 593 0 465 291 181 0 chr12 108225941 108226151 -36056338 + MIR SINE MIR 14 261 -1 201 133 0 0 chr12 108226471 108226501 -36055988 + (CAA)n Simple_repeat Simple_repeat 2 31 0 559 270 147 33 chr12 108227105 108227412 -36055077 - LTR16A1 LTR ERVL -1 456 115 4324 104 12 10 chr12 108227662 108228266 -36054223 + L1PA12 LINE L1 5356 5960 -208 1212 193 14 31 chr12 108228423 108228646 -36053843 - MER20 DNA MER1_type 0 219 1 657 266 45 37 chr12 108228787 108229016 -36053473 + MIR SINE MIR 7 232 -30 505 358 115 10 chr12 108231996 108232062 -36050427 - L2 LINE L2 -14 3258 3200 1806 229 209 12 chr12 108232062 108232559 -36049930 - MLT1G1 LTR MaLR 0 595 1 505 358 115 10 chr12 108232559 108232788 -36049701 - L2 LINE L2 -72 3200 2932 2243 185 61 34 chr12 108233979 108234422 -36048067 - MSTB2 LTR MaLR 0 457 3 1138 133 6 6 chr12 108234513 108234693 -36047796 - AluSx SINE Alu -11 301 122 615 146 0 0 chr12 108234693 108234789 -36047700 + MSTB2 LTR MaLR 362 457 0 862 132 22 37 chr12 108234791 108234927 -36047562 - AluSx SINE Alu -179 134 1 601 297 85 52 chr12 108234952 108235282 -36047207 + L2 LINE L2 999 1339 -1975 759 205 21 147 chr12 108235334 108235488 -36047001 - L2 LINE L2 -39 3274 3181 1246 194 21 24 chr12 108235488 108235777 -36046712 + AluJb SINE Alu 1 288 -24 759 205 21 147 chr12 108235777 108235949 -36046540 - L2 LINE L2 -132 3181 2989 1446 272 129 35 chr12 108235958 108236808 -36045681 + L2 LINE L2 1289 2218 -1096 225 132 0 0 chr12 108237161 108237199 -36045290 + (CA)n Simple_repeat Simple_repeat 2 39 0 656 39 0 0 chr12 108237458 108237536 -36044953 + L1PA8 LINE L1 6094 6171 -1 185 315 102 37 chr12 108238005 108238113 -36044376 + L2 LINE L2 3150 3264 -8 276 250 16 0 chr12 108238271 108238335 -36044154 + MLT1J LTR MaLR 123 187 -324 316 156 0 0 chr12 108238414 108238459 -36044030 + MLT1I LTR MaLR 292 336 -73 1091 169 88 19 chr12 108238484 108238744 -36043745 - MER33 DNA MER1_type -36 288 11 470 171 0 0 chr12 108238753 108238829 -36043660 + MLT1I LTR MaLR 334 409 0 234 311 67 22 chr12 108239182 108239272 -36043217 - L2 LINE L2 -4 3268 3175 1285 252 42 29 chr12 108239326 108239703 -36042786 - MLT1E3 LTR MaLR 0 624 243 1316 304 52 8 chr12 108239749 108240285 -36042204 - L2 LINE L2 -672 2642 2083 372 59 0 0 chr12 108240397 108240448 -36042041 + (TG)n Simple_repeat Simple_repeat 2 52 0 289 279 38 25 chr12 108240570 108240649 -36041840 - MIR SINE MIR -61 147 68 322 297 50 10 chr12 108240853 108240954 -36041535 - MIR SINE MIR -80 182 78 668 283 71 10 chr12 108241140 108241338 -36041151 + MIR SINE MIR 32 241 -21 1347 266 56 13 chr12 108241581 108241976 -36040513 + L2 LINE L2 2902 3313 0 780 314 144 36 chr12 108242102 108242928 -36039561 + L2 LINE L2 2399 3310 -3 530 337 36 10 chr12 108243183 108243379 -36039110 - MIR SINE MIR -49 213 13 655 215 85 81 chr12 108243412 108243659 -36038830 + L2 LINE L2 2173 2420 -894 586 217 6 13 chr12 108243690 108243847 -36038642 + (CATATA)n Simple_repeat Simple_repeat 3 158 0 279 0 0 0 chr12 108244490 108244521 -36037968 + (CA)n Simple_repeat Simple_repeat 2 32 0 234 305 114 36 chr12 108244868 108245035 -36037454 + MIR SINE MIR 83 262 0 22 0 0 0 chr12 108245202 108245224 -36037265 + AT_rich Low_complexity Low_complexity 1 22 0 200 339 25 41 chr12 108246092 108246213 -36036276 - L2 LINE L2 -1 3312 3194 542 290 177 11 chr12 108247058 108247544 -36034945 + L2 LINE L2 2543 3146 -167 384 292 0 26 chr12 108247545 108247658 -36034831 + CT-rich Low_complexity Low_complexity 2 111 0 29 0 0 0 chr12 108247758 108247787 -36034702 + GC_rich Low_complexity Low_complexity 1 29 0 23 92 0 0 chr12 108247821 108247886 -36034603 + GC_rich Low_complexity Low_complexity 1 65 0 212 200 32 32 chr12 108247921 108248016 -36034473 + (CCG)n Simple_repeat Simple_repeat 1 95 0 370 0 40 0 chr12 108248280 108248330 -36034159 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1973 122 17 0 chr12 108248330 108248617 -36033872 - AluSq SINE Alu -21 292 1 217 235 191 15 chr12 108248692 108248760 -36033729 + L2 LINE L2 3189 3268 -4 2109 150 54 8 chr12 108251135 108251522 -36030967 - L1MC2 LINE L1 0 6344 5940 30 0 0 0 chr12 108251953 108251983 -36030506 + AT_rich Low_complexity Low_complexity 1 30 0 1044 95 7 14 chr12 108252771 108252919 -36029570 - L1PB2 LINE L1 0 6151 6005 2172 103 3 58 chr12 108253013 108253343 -36029146 - AluSx SINE Alu 0 312 1 195 42 0 0 chr12 108253535 108253559 -36028930 + (A)n Simple_repeat Simple_repeat 1 24 0 882 233 44 0 chr12 108254114 108254294 -36028195 - MER5A DNA MER1_type -1 188 1 356 209 22 14 chr12 108254598 108254699 -36027790 + MIR SINE MIR 81 144 -64 822 178 0 22 chr12 108255009 108255144 -36027345 + FLAM_A SINE Alu 2 133 0 373 352 165 26 chr12 108255212 108255801 -36026688 + L2 LINE L2 2532 3222 -50 708 284 131 0 chr12 108256003 108256239 -36026250 - L3 LINE CR1 -4 1573 1307 326 311 142 48 chr12 108256996 108257346 -36025143 - L2 LINE L2 -1042 2272 1857 952 171 44 33 chr12 108257346 108257527 -36024962 - MER5A DNA MER1_type -3 186 4 326 311 142 48 chr12 108257527 108257691 -36024798 - L2 LINE L2 -1457 1857 1710 2330 68 0 40 chr12 108257785 108258106 -36024383 - AluY SINE Alu -3 308 1 437 99 28 0 chr12 108259487 108259558 -36022931 + GA-rich Low_complexity Low_complexity 2 74 0 186 43 0 0 chr12 108259571 108259594 -36022895 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 341 226 66 51 chr12 108259924 108260061 -36022428 - MIR SINE MIR -75 187 49 189 271 255 52 chr12 108260642 108260834 -36021655 - MIR SINE MIR -6 256 26 258 393 30 7 chr12 108260958 108261093 -36021396 - MIR3 SINE MIR -40 168 31 3096 207 43 12 chr12 108261372 108261977 -36020512 - MLT1E2 LTR MaLR 0 626 3 1592 132 9 0 chr12 108262163 108262390 -36020099 - AluSg/x SINE Alu -12 300 72 321 93 0 0 chr12 108262390 108262433 -36020056 + Alu SINE Alu 26 68 -233 269 330 11 0 chr12 108262674 108262765 -36019724 - MIR SINE MIR -108 154 63 987 241 73 8 chr12 108263421 108263666 -36018823 - MIR SINE MIR 0 262 2 1801 174 38 9 chr12 108263947 108264263 -36018226 + MLT2B1 LTR ERVL 1 325 -195 * 1976 199 8 1 chr12 108264254 108264645 -36017844 - MLT2B1 LTR ERVL -77 443 1 552 268 151 0 chr12 108265890 108266095 -36016394 - MLT1J2 LTR MaLR -4 446 211 21 0 0 0 chr12 108266608 108266629 -36015860 + AT_rich Low_complexity Low_complexity 1 21 0 2389 107 0 0 chr12 108266658 108266966 -36015523 + AluSg SINE Alu 1 308 -2 590 140 9 0 chr12 108267572 108267686 -36014803 + (TGGA)n Simple_repeat Simple_repeat 1 115 0 209 274 0 0 chr12 108267802 108267853 -36014636 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 467 186 0 0 chr12 108268066 108268136 -36014353 + T-rich Low_complexity Low_complexity 1 70 0 550 275 0 0 chr12 108268151 108268322 -36014167 + C-rich Low_complexity Low_complexity 1 171 0 229 370 0 0 chr12 108268324 108268424 -36014065 + CT-rich Low_complexity Low_complexity 2 101 0 24 53 0 0 chr12 108270991 108271029 -36011460 + AT_rich Low_complexity Low_complexity 1 38 0 1994 126 4 0 chr12 108271165 108271442 -36011047 + AluSq SINE Alu 1 278 -35 789 309 126 31 chr12 108271468 108272054 -36010435 + L2 LINE L2 1986 2627 -687 1401 179 93 0 chr12 108272095 108272352 -36010137 + AluJb SINE Alu 24 304 -8 198 0 0 0 chr12 108275701 108275723 -36006766 + (CA)n Simple_repeat Simple_repeat 1 22 0 202 239 0 0 chr12 108275724 108275770 -36006719 + (TA)n Simple_repeat Simple_repeat 2 47 0 185 363 29 0 chr12 108275785 108275887 -36006602 - MIR SINE MIR -81 181 77 265 243 153 0 chr12 108276904 108277015 -36005474 - MIR3 SINE MIR -46 162 35 21 36 0 0 chr12 108277201 108277229 -36005260 + AT_rich Low_complexity Low_complexity 1 28 0 354 100 0 0 chr12 108278128 108278188 -36004301 + (TTGG)n Simple_repeat Simple_repeat 2 61 0 22 0 0 0 chr12 108280120 108280142 -36002347 + AT_rich Low_complexity Low_complexity 1 22 0 201 243 0 0 chr12 108282184 108282221 -36000268 - MIR SINE MIR -87 121 85 937 260 206 39 chr12 108282379 108283008 -35999481 + L2 LINE L2 2580 3311 -2 464 44 0 15 chr12 108285038 108285106 -35997383 + (CATA)n Simple_repeat Simple_repeat 2 68 0 357 86 0 0 chr12 108285106 108285164 -35997325 + (GA)n Simple_repeat Simple_repeat 1 58 0 3726 106 19 9 chr12 108285860 108286782 -35995707 - L1PA8A LINE L1 -383 5748 4818 425 157 0 157 chr12 108287034 108287136 -35995353 - MER20 DNA MER1_type -130 89 4 898 117 25 128 chr12 108287212 108287408 -35995081 + AluSp SINE Alu 136 311 -2 182 352 56 37 chr12 108287408 108287516 -35994973 + L2 LINE L2 2994 3103 -169 513 270 157 0 chr12 108288325 108288529 -35993960 - MLT1J2 LTR MaLR -4 446 211 21 0 0 0 chr12 108289044 108289065 -35993424 + AT_rich Low_complexity Low_complexity 1 21 0 2364 103 0 6 chr12 108289094 108289405 -35993084 + AluSg SINE Alu 1 309 -1 388 153 31 0 chr12 108290022 108290120 -35992369 + (TGGA)n Simple_repeat Simple_repeat 1 101 0 279 150 0 0 chr12 108290142 108290202 -35992287 + (ATTG)n Simple_repeat Simple_repeat 2 61 0 195 170 0 0 chr12 108290266 108290313 -35992176 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 657 169 6 23 chr12 108290370 108290542 -35991947 + (TGGA)n Simple_repeat Simple_repeat 3 171 0 22 0 0 0 chr12 108290918 108290940 -35991549 + AT_rich Low_complexity Low_complexity 1 22 0 353 346 87 56 chr12 108291029 108291477 -35991012 - L2 LINE L2 0 3272 2811 219 69 0 0 chr12 108291999 108292028 -35990461 + (A)n Simple_repeat Simple_repeat 1 29 0 539 333 90 52 chr12 108292368 108293263 -35989226 + L2 LINE L2 2346 3290 -23 1806 158 11 0 chr12 108293396 108293674 -35988815 + AluJo SINE Alu 2 282 -30 183 80 0 0 chr12 108293677 108293702 -35988787 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 431 203 188 22 chr12 108293838 108293976 -35988513 - MIR SINE MIR -25 237 77 676 274 163 42 chr12 108293996 108294353 -35988136 - MLT1J1 LTR MaLR -38 408 9 204 355 13 13 chr12 108294356 108294432 -35988057 - MIR SINE MIR -186 76 1 933 180 44 22 chr12 108294434 108294617 -35987872 - MER20 DNA MER1_type -3 216 30 385 261 17 34 chr12 108295198 108295317 -35987172 - L2 LINE L2 -9 3304 3188 919 190 0 34 chr12 108295357 108295536 -35986953 + MER20 DNA MER1_type 35 207 -12 404 266 187 58 chr12 108295561 108295985 -35986504 - L2 LINE L2 -161 3152 2678 226 262 0 0 chr12 108296257 108296299 -35986190 + L2 LINE L2 3143 3184 -88 2354 77 3 3 chr12 108296888 108297175 -35985314 + AluSq SINE Alu 1 287 -26 2423 70 7 0 chr12 108297539 108297837 -35984652 + AluSg SINE Alu 1 300 -10 3166 76 67 7 chr12 108298486 108298865 -35983624 + MLT2A1 LTR ERVL 1 409 -35 339 25 0 0 chr12 108298865 108298905 -35983584 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 3166 76 67 7 chr12 108298905 108298944 -35983545 + MLT2A1 LTR ERVL 409 444 0 828 213 116 10 chr12 108299346 108299553 -35982936 - MIR SINE MIR -1 261 33 2015 191 56 82 chr12 108299576 108300090 -35982399 - MLT1D LTR MaLR -4 501 1 279 200 22 89 chr12 108300201 108300248 -35982241 + MIR SINE MIR 166 206 -56 1996 132 0 16 chr12 108300248 108300552 -35981937 + AluSx SINE Alu 1 299 -13 279 200 22 89 chr12 108300552 108300594 -35981895 + MIR SINE MIR 206 249 -13 250 222 37 0 chr12 108301432 108301486 -35981003 - L2 LINE L2 -1 3271 3216 210 192 0 0 chr12 108301505 108301557 -35980932 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 304 337 129 10 chr12 108301879 108302072 -35980417 - MIR SINE MIR -27 235 20 363 325 110 25 chr12 108302690 108302853 -35979636 - MER91A DNA MER1_type 0 196 20 938 309 55 9 chr12 108303623 108303950 -35978539 - MLT1I LTR MaLR 0 409 68 856 125 0 0 chr12 108304168 108304304 -35978185 + L1MA6 LINE L1 6047 6182 -118 763 258 206 18 chr12 108304646 108305148 -35977341 - LTR50 LTR ERVL -117 678 1 340 250 179 51 chr12 108305981 108306137 -35976352 + MIR SINE MIR 12 187 -75 253 275 0 33 chr12 108306332 108306423 -35976066 + CT-rich Low_complexity Low_complexity 2 89 0 559 295 64 75 chr12 108306912 108307397 -35975092 + L1ME3A LINE L1 5599 6082 -88 1898 151 11 0 chr12 108307555 108307839 -35974650 + AluSx SINE Alu 1 287 -25 579 251 123 0 chr12 108307890 108308077 -35974412 - MIR SINE MIR -6 256 47 936 210 0 0 chr12 108308202 108308369 -35974120 - FRAM SINE Alu -10 166 1 1604 268 61 49 chr12 108308692 108309534 -35972955 - HAL1 LINE L1 -10 2497 1646 2346 171 5 0 chr12 108309536 108309915 -35972574 + MLT1B LTR MaLR 1 381 -9 1334 269 53 21 chr12 108309927 108310440 -35972049 - HAL1 LINE L1 -873 1634 1106 787 264 24 60 chr12 108310434 108310767 -35971722 - HAL1 LINE L1 -2184 323 3 * 808 236 154 90 chr12 108311303 108311803 -35970686 - MLT1H LTR MaLR 0 549 18 338 269 69 111 chr12 108311857 108312191 -35970298 - MLT1I-int LTR MaLR -24 1347 1028 380 279 69 111 chr12 108312621 108312954 -35969535 - MLT1I-int LTR MaLR -24 1347 1029 848 289 135 41 chr12 108313432 108314187 -35968302 - L2 LINE L2 -62 3251 2430 253 133 0 0 chr12 108314202 108314247 -35968242 - L1PA11 LINE L1 -4 6170 6126 * 838 112 0 0 chr12 108314241 108314366 -35968123 + L1P4 LINE L1 5512 5636 -529 477 217 63 63 chr12 108314369 108314512 -35967977 - L2 LINE L2 -906 2408 2266 281 287 29 59 chr12 108314564 108314700 -35967789 - MIR3 SINE MIR -38 170 39 927 160 55 30 chr12 108314859 108315059 -35967430 - MER3 DNA MER1_type -4 205 1 277 229 33 24 chr12 108315824 108315914 -35966575 + MIR SINE MIR 17 112 -96 1631 166 43 7 chr12 108316090 108316368 -35966121 - AluJo SINE Alu -24 288 1 851 281 13 36 chr12 108316693 108316995 -35965494 - L1MC/D LINE L1 -1994 5814 5520 2406 151 21 32 chr12 108317371 108317802 -35964687 - MSTB LTR MaLR 0 426 1 290 318 155 8 chr12 108317839 108317968 -35964521 - L2 LINE L2 -2 3270 3123 485 283 42 18 chr12 108318055 108318221 -35964268 - MIR SINE MIR -63 199 30 2476 100 17 11 chr12 108318319 108318678 -35963811 - THE1B LTR MaLR -3 361 1 826 237 48 25 chr12 108318856 108319096 -35963393 + MIR SINE MIR 1 231 -31 416 283 133 8 chr12 108320084 108320204 -35962285 + L2 LINE L2 3137 3271 -1 206 108 0 0 chr12 108320317 108320354 -35962135 - L2 LINE L2 -222 3050 3014 204 216 0 0 chr12 108320626 108320663 -35961826 + (CA)n Simple_repeat Simple_repeat 1 37 0 479 269 167 43 chr12 108321629 108321934 -35960555 - L2 LINE L2 -36 3277 2935 1320 234 210 34 chr12 108322147 108322804 -35959685 - LTR41 LTR ERVL 0 773 1 184 330 257 0 chr12 108322810 108322919 -35959570 + L3 LINE CR1 674 810 -767 24 0 0 0 chr12 108323118 108323142 -35959347 + AT_rich Low_complexity Low_complexity 1 24 0 434 338 72 57 chr12 108323142 108323405 -35959084 + L3 LINE CR1 817 1083 -494 1986 97 0 4 chr12 108323989 108324246 -35958243 - AluSg SINE Alu -17 293 38 415 238 0 12 chr12 108324332 108324416 -35958073 + L2 LINE L2 3185 3267 -5 1747 179 16 3 chr12 108324633 108324941 -35957548 + AluJb SINE Alu 1 312 0 2345 105 0 0 chr12 108325558 108325853 -35956636 + AluSx SINE Alu 1 295 -17 183 178 44 44 chr12 108325986 108326031 -35956458 - L2 LINE L2 -4 3309 3265 1526 224 105 78 chr12 108326349 108326912 -35955577 + L1MEc LINE L1 35 612 -5784 2777 223 70 20 chr12 108326913 108327850 -35954639 + L1M4 LINE L1 3726 4709 -1437 1004 185 105 16 chr12 108327866 108328180 -35954309 + L1M4 LINE L1 4861 5202 -944 * 22089 146 17 12 chr12 108328178 108330872 -35951617 + L1PA6 LINE L1 1 2812 -3649 2146 130 0 0 chr12 108330872 108331165 -35951324 + AluSc SINE Alu 1 293 -16 22089 146 17 12 chr12 108331165 108333672 -35948817 + L1PA6 LINE L1 2812 5306 -1155 7749 20 1 0 chr12 108333672 108334715 -35947774 + L1PA3 LINE L1 5107 6150 -5 6263 93 4 9 chr12 108334717 108335898 -35946591 + L1PA6 LINE L1 5293 6469 0 321 300 250 0 chr12 108337364 108337544 -35944945 - MIR SINE MIR -14 248 24 3234 145 3 5 chr12 108338444 108339124 -35943365 + L1MA3 LINE L1 4768 5446 -743 5370 108 22 7 chr12 108339192 108340036 -35942453 + L1MA3 LINE L1 5449 6305 0 27924 104 8 27 chr12 108340494 108345896 -35936593 - L1P3 LINE L1 -1058 5403 11 2640 248 85 12 chr12 108345937 108347028 -35935461 - L1M4 LINE L1 -2289 3857 2687 8503 94 2 0 chr12 108347201 108348675 -35933814 + L1P4 LINE L1 4163 5639 -529 3680 0 19 0 chr12 108348680 108348839 -35933650 + L1PA11 LINE L1 5325 5462 -712 3680 91 6 0 chr12 108348839 108349339 -35933150 + L1PA11 LINE L1 5652 6158 -16 3680 0 19 0 chr12 108349339 108349358 -35933131 + L1PA11 LINE L1 5462 6158 -16 4706 156 8 10 chr12 108349985 108350601 -35931888 + L1PA8A LINE L1 4865 5481 -650 2255 106 13 0 chr12 108350601 108350903 -35931586 + AluSg1 SINE Alu 1 306 -3 4706 156 8 10 chr12 108350903 108351531 -35930958 + L1PA8A LINE L1 5481 6113 -18 2786 222 82 18 chr12 108351533 108352463 -35930026 + L1ME1 LINE L1 5184 6161 -5 299 244 49 24 chr12 108352489 108352571 -35929918 - MIR SINE MIR -59 149 66 2010 107 23 7 chr12 108352635 108352943 -35929546 + L1PA15 LINE L1 5853 6165 0 4598 140 18 0 chr12 108352954 108353808 -35928681 + L1MA9 LINE L1 5319 6283 -29 185 315 178 0 chr12 108354733 108354806 -35927683 - L2 LINE L2 -31 3241 3156 320 283 66 28 chr12 108355598 108355704 -35926785 - MIR3 SINE MIR -86 122 13 804 148 0 0 chr12 108355718 108355833 -35926656 + FLAM_C SINE Alu 4 118 -25 198 0 0 0 chr12 108355837 108355859 -35926630 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 353 246 75 82 chr12 108355934 108356068 -35926421 + MIR3 SINE MIR 69 201 -7 1970 147 0 0 chr12 108356145 108356453 -35926036 + AluJo SINE Alu 1 308 0 394 319 52 6 chr12 108356507 108356665 -35925824 - MIR SINE MIR -66 196 38 2962 48 5 0 chr12 108357527 108357898 -35924591 - L1PA7 LINE L1 0 6154 5782 209 365 75 56 chr12 108358463 108358570 -35923919 - L2 LINE L2 -6 3266 3158 560 303 149 9 chr12 108360770 108360998 -35921491 + MIR SINE MIR 2 261 -1 201 284 0 88 chr12 108361132 108361234 -35921255 + MIR SINE MIR 119 211 -51 356 283 174 16 chr12 108362110 108362294 -35920195 - MIR SINE MIR -48 214 2 258 185 0 0 chr12 108362535 108362589 -35919900 - MLT1K LTR MaLR -12 576 523 2300 84 3 0 chr12 108363888 108364193 -35918296 + AluSx SINE Alu 1 287 -25 291 209 147 53 chr12 108365826 108365938 -35916551 + MIR SINE MIR 34 156 -93 184 185 0 148 chr12 108366223 108366304 -35916185 + L2 LINE L2 2995 3063 -209 384 125 0 0 chr12 108366447 108366511 -35915978 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 284 250 11 43 chr12 108368099 108368191 -35914298 + MER117 DNA MER1_type 5 93 -104 576 245 198 19 chr12 108368497 108368709 -35913780 - MIR SINE MIR -1 261 12 593 258 84 38 chr12 108369692 108369905 -35912584 - MIR SINE MIR -11 251 29 2182 161 75 14 chr12 108370284 108370724 -35911765 - MLT1C LTR MaLR 0 467 1 248 320 64 12 chr12 108370783 108370955 -35911534 - L2 LINE L2 -536 2778 2598 283 171 14 14 chr12 108371032 108371102 -35911387 + L1ME LINE L1 5710 5779 -342 3965 236 59 22 chr12 108371294 108371421 -35911068 - L1ME1 LINE L1 0 6166 6045 2008 67 60 7 chr12 108371421 108371703 -35910786 - AluY SINE Alu -14 297 1 3965 236 59 22 chr12 108371703 108373760 -35908729 - L1ME1 LINE L1 -121 6045 3894 6761 63 6 0 chr12 108373771 108375374 -35907115 - L1PA7 LINE L1 -2 6152 4555 1000 137 52 38 chr12 108375553 108375764 -35906725 - L1P3 LINE L1 -6237 224 11 2614 256 86 7 chr12 108375805 108376891 -35905598 - L1ME1 LINE L1 -2289 3857 2687 1411 101 0 0 chr12 108376903 108377132 -35905357 + L1PA7 LINE L1 5948 6176 0 2973 143 6 50 chr12 108377138 108377683 -35904806 + Tigger7 DNA MER2_type 2 522 -1965 379 200 88 0 chr12 108377687 108377767 -35904722 + Tigger7 DNA MER2_type 2401 2487 0 6279 173 11 1 chr12 108377817 108379036 -35903453 + L1MA2 LINE L1 3261 4492 -1654 261 25 0 0 chr12 108379400 108379440 -35903049 + L1PA6 LINE L1 6115 6154 0 1785 169 4 4 chr12 108379847 108380126 -35902363 + AluSx SINE Alu 18 296 -16 22 35 0 0 chr12 108382390 108382419 -35900070 + AT_rich Low_complexity Low_complexity 1 29 0 6345 134 13 21 chr12 108382433 108384277 -35898212 + L1MA2 LINE L1 4477 6304 0 22 0 0 0 chr12 108384277 108384299 -35898190 + AT_rich Low_complexity Low_complexity 1 22 0 449 308 135 8 chr12 108384603 108384863 -35897626 - MLT1J2 LTR MaLR -157 293 1 6810 53 22 0 chr12 108384905 108386041 -35896448 + L1PA6 LINE L1 5026 6180 0 189 0 0 0 chr12 108386319 108386340 -35896149 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 513 311 87 36 chr12 108386623 108387061 -35895428 - MLT1J LTR MaLR -51 460 1 331 354 69 64 chr12 108387316 108387737 -35894752 - L2 LINE L2 -1 3271 2849 307 202 18 0 chr12 108388082 108388191 -35894298 + (TA)n Simple_repeat Simple_repeat 1 111 0 1992 178 11 3 chr12 108388564 108388923 -35893566 + MLT1A1 LTR MaLR 4 365 0 3042 160 58 0 chr12 108389368 108389898 -35892591 + MER68 LTR ERV1 2 562 0 1033 214 28 25 chr12 108390040 108390325 -35892164 - MER46C DNA MER2_type -52 286 1 340 314 33 26 chr12 108390325 108390478 -35892011 - MIR SINE MIR -108 154 1 273 98 0 0 chr12 108390768 108390809 -35891680 + (TG)n Simple_repeat Simple_repeat 1 41 0 26 0 0 0 chr12 108391271 108391297 -35891192 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr12 108392800 108392823 -35889666 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 459 156 0 0 chr12 108392934 108393011 -35889478 + AluJ/FLAM SINE Alu 1 77 -235 253 86 0 0 chr12 108393024 108393059 -35889430 - MLT1B LTR MaLR -145 245 211 1646 126 0 0 chr12 108393059 108393281 -35889208 + AluSg/x SINE Alu 66 287 -23 350 100 17 0 chr12 108393313 108393373 -35889116 + (TA)n Simple_repeat Simple_repeat 2 62 0 268 194 28 0 chr12 108393400 108393459 -35889030 + (TA)n Simple_repeat Simple_repeat 2 65 -10 240 86 0 0 chr12 108393459 108393494 -35888995 + (TG)n Simple_repeat Simple_repeat 2 36 0 268 194 28 0 chr12 108393494 108393506 -35888983 + (TA)n Simple_repeat Simple_repeat 65 75 0 208 286 179 0 chr12 108393668 108393752 -35888737 + MIR3 SINE MIR 89 187 -21 2305 113 10 79 chr12 108394075 108394491 -35887998 - MLT1B LTR MaLR -3 387 1 2412 99 16 16 chr12 108394497 108394860 -35887629 + THE1B LTR MaLR 2 364 0 447 262 42 65 chr12 108396343 108396511 -35885978 - MIR SINE MIR -40 222 59 277 265 126 39 chr12 108396596 108396826 -35885663 + MER112 DNA MER1_type 2 251 -9 274 292 131 8 chr12 108397044 108397174 -35885315 - MIR SINE MIR -114 148 3 * 290 266 57 105 chr12 108397174 108397374 -35885115 - MIR SINE MIR -43 219 30 242 368 45 15 chr12 108398127 108398260 -35884229 + MER5A DNA MER1_type 3 139 -50 2831 111 16 91 chr12 108398668 108399228 -35883261 + L1PB3 LINE L1 5634 6151 -3 8436 61 7 1 chr12 108399491 108400660 -35881829 + L1P LINE L1 1264 2439 -3707 1934 139 4 0 chr12 108400663 108400936 -35881553 + AluSc SINE Alu 1 274 -35 3778 165 47 5 chr12 108401073 108402165 -35880324 - L1MB3 LINE L1 -208 5975 4848 466 156 31 10 chr12 108402475 108402571 -35879918 + FRAM SINE Alu 18 115 -61 610 118 7 111 chr12 108402822 108402957 -35879532 + L1PA16 LINE L1 6045 6165 -1 732 218 95 25 chr12 108403832 108404075 -35878414 + MLT1K LTR MaLR 326 585 -3 195 311 0 0 chr12 108404110 108404155 -35878334 - L2 LINE L2 -8 3264 3220 312 305 84 0 chr12 108404343 108404510 -35877979 - L1ME3 LINE L1 -215 5947 5767 1914 152 24 7 chr12 108404551 108404847 -35877642 - AluSx SINE Alu -11 301 1 3221 37 5 5 chr12 108404899 108405306 -35877183 + L1PA4 LINE L1 5748 6154 -1 845 67 8 0 chr12 108405306 108405421 -35877068 + L1PA8 LINE L1 6052 6171 -1 32 0 0 0 chr12 108405421 108405453 -35877036 + AT_rich Low_complexity Low_complexity 1 32 0 575 239 37 0 chr12 108405453 108405587 -35876902 - MLT1G LTR MaLR -443 147 9 384 185 8 59 chr12 108405775 108405894 -35876595 + LTR33A LTR ERVL 411 523 0 268 212 0 15 chr12 108406295 108406361 -35876128 - MLT1J1 LTR MaLR -24 422 358 213 121 0 0 chr12 108406444 108406477 -35876012 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 2437 84 7 0 chr12 108406481 108406791 -35875698 - AluSx SINE Alu 0 312 1 1475 194 17 7 chr12 108406853 108407147 -35875342 + MER49 LTR ERV1 1 297 -626 1398 208 6 24 chr12 108407175 108407507 -35874982 + MER4D LTR ERV1 552 877 -26 1672 194 3 28 chr12 108407507 108407826 -35874663 + AluJo SINE Alu 1 311 -1 767 93 29 14 chr12 108407833 108407973 -35874516 + GA-rich Low_complexity Low_complexity 2 143 0 989 175 43 33 chr12 108408001 108408212 -35874277 - MLT1J2 LTR MaLR -235 215 3 324 285 8 57 chr12 108410101 108410224 -35872265 + MIR SINE MIR 31 147 -115 9851 134 47 10 chr12 108410711 108412740 -35869749 + L1P4 LINE L1 3529 5639 -529 620 216 0 22 chr12 108412753 108412903 -35869586 + L1M4 LINE L1 5334 5473 -711 3680 91 6 0 chr12 108412903 108413403 -35869086 + L1PA11 LINE L1 5652 6158 -16 620 216 0 22 chr12 108413403 108413432 -35869057 + L1M4 LINE L1 5473 5501 -683 7259 63 3 12 chr12 108414049 108415353 -35867136 + L1PA5 LINE L1 4865 6153 -1 188 263 18 18 chr12 108416204 108416261 -35866228 + MIR3 SINE MIR 120 176 -32 696 207 48 7 chr12 108416352 108416497 -35865992 - FRAM SINE Alu -13 163 13 340 204 243 10 chr12 108416596 108416699 -35865790 + MIR SINE MIR 123 249 -13 319 345 18 0 chr12 108417062 108417175 -35865314 - MER5B DNA MER1_type -63 115 1 23 54 0 0 chr12 108418116 108418153 -35864336 + AT_rich Low_complexity Low_complexity 1 37 0 962 209 79 55 chr12 108419753 108420016 -35862473 + MIR SINE MIR 2 262 0 21 0 0 0 chr12 108420136 108420157 -35862332 + AT_rich Low_complexity Low_complexity 1 21 0 3503 222 62 24 chr12 108420198 108420700 -35861789 - L1MC4a LINE L1 -6 7802 7320 2310 116 0 0 chr12 108420700 108421010 -35861479 + AluSg SINE Alu 1 310 0 3503 222 62 24 chr12 108421010 108421627 -35860862 - L1MC4a LINE L1 -488 7320 6641 22 35 0 0 chr12 108422081 108422110 -35860379 + AT_rich Low_complexity Low_complexity 1 29 0 248 298 149 0 chr12 108422401 108422495 -35859994 + L2 LINE L2 3156 3263 -9 302 330 36 0 chr12 108422551 108422663 -35859826 - L2 LINE L2 -12 3260 3145 24 0 0 0 chr12 108423248 108423272 -35859217 + AT_rich Low_complexity Low_complexity 1 24 0 196 320 0 0 chr12 108423572 108423622 -35858867 + L2 LINE L2 3264 3313 0 312 278 90 28 chr12 108424397 108424541 -35857948 - MIR SINE MIR -47 215 63 21 0 0 0 chr12 108425913 108425934 -35856555 + AT_rich Low_complexity Low_complexity 1 21 0 195 239 0 0 chr12 108426513 108426559 -35855930 - L2 LINE L2 0 3313 3268 234 264 66 38 chr12 108426573 108426679 -35855810 - MIR SINE MIR 0 262 154 1072 161 0 6 chr12 108426706 108426868 -35855621 + AluJb SINE Alu 139 299 -13 185 364 108 28 chr12 108427482 108427658 -35854831 - L2 LINE L2 -229 3043 2854 429 336 0 0 chr12 108428294 108428416 -35854073 + MER5B DNA MER1_type 1 122 -56 340 204 243 10 chr12 108428771 108428874 -35853615 - MIR SINE MIR -13 249 123 696 207 48 7 chr12 108428973 108429118 -35853371 + FRAM SINE Alu 13 163 -13 192 286 18 0 chr12 108429209 108429265 -35853224 - MIR3 SINE MIR -32 176 120 3408 35 0 0 chr12 108430116 108430522 -35851967 - L1PA5 LINE L1 -1 6153 5748 1914 152 24 7 chr12 108430574 108430870 -35851619 + AluSx SINE Alu 1 301 -11 312 305 84 0 chr12 108430911 108431078 -35851411 + L1ME3 LINE L1 5767 5947 -215 195 311 0 0 chr12 108431266 108431311 -35851178 + L2 LINE L2 3220 3264 -8 724 236 86 30 chr12 108431346 108431613 -35850876 - MLT1K LTR MaLR -3 585 304 5589 119 11 0 chr12 108432463 108433142 -35849347 - L1PA16 LINE L1 -1 6165 5472 2217 113 10 0 chr12 108433142 108433443 -35849046 - AluSg1 SINE Alu -5 304 1 5589 119 11 0 chr12 108433443 108434059 -35848430 - L1PA16 LINE L1 -694 5472 4865 789 149 0 29 chr12 108434686 108434705 -35847784 - L1P4 LINE L1 -672 5494 5476 3680 91 6 0 chr12 108434705 108435209 -35847280 - L1PA11 LINE L1 -16 6158 5652 789 149 0 29 chr12 108435209 108435364 -35847125 - L1P4 LINE L1 -690 5476 5325 9881 133 47 10 chr12 108435369 108437397 -35845092 - L1PA11 LINE L1 -529 5639 3529 352 266 229 42 chr12 108437806 108437998 -35844491 - MIR SINE MIR -4 258 31 242 321 0 9 chr12 108439761 108439870 -35842619 + (TA)n Simple_repeat Simple_repeat 1 108 0 21 0 0 0 chr12 108439985 108440006 -35842483 + AT_rich Low_complexity Low_complexity 1 21 0 2944 102 0 29 chr12 108440383 108440460 -35842029 + L1PB2 LINE L1 5710 5788 -363 2477 77 0 3 chr12 108440460 108440772 -35841717 + AluY SINE Alu 1 311 0 2944 102 0 29 chr12 108440772 108441147 -35841342 + L1PB2 LINE L1 5788 6149 -2 1969 122 15 0 chr12 108441241 108441512 -35840977 + AluSx SINE Alu 1 275 -37 204 40 0 0 chr12 108441516 108441541 -35840948 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2484 112 22 0 chr12 108441858 108442214 -35840275 - THE1B LTR MaLR 0 364 1 2644 40 0 0 chr12 108442295 108442596 -35839893 - AluY SINE Alu -10 301 1 22 56 0 0 chr12 108442854 108442890 -35839599 + AT_rich Low_complexity Low_complexity 1 36 0 477 0 0 0 chr12 108443171 108443224 -35839265 + (TG)n Simple_repeat Simple_repeat 1 53 0 2081 87 0 21 chr12 108443224 108443510 -35838979 - AluSq SINE Alu -33 280 1 414 276 159 0 chr12 108443795 108443958 -35838531 - MER5A DNA MER1_type 0 189 1 180 77 0 0 chr12 108444198 108444224 -35838265 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 2688 38 0 0 chr12 108444224 108444543 -35837946 - L1PA4 LINE L1 -16 6139 5821 1165 272 99 7 chr12 108444790 108445202 -35837287 + LTR16A LTR ERVL 1 450 0 341 181 139 0 chr12 108445254 108445326 -35837163 - L2 LINE L2 0 3313 3232 2960 143 11 25 chr12 108446609 108447232 -35835257 + L1MB8 LINE L1 5203 5801 -383 1536 164 0 124 chr12 108447232 108447628 -35834861 - MER7A DNA MER2_type 0 346 2 1942 147 33 19 chr12 108447628 108447995 -35834494 + L1MB8 LINE L1 5802 6173 -5 306 330 25 8 chr12 108448166 108448284 -35834205 + L1MEd LINE L1 51 170 -5949 377 296 68 61 chr12 108448596 108449462 -35833027 + L1MEd LINE L1 494 1467 -1023 1129 203 8 56 chr12 108449462 108449713 -35832776 - MER8 DNA MER2_type 0 239 1 377 296 68 61 chr12 108449713 108449899 -35832590 + L1MEd LINE L1 1467 1650 -840 232 62 0 0 chr12 108449947 108449979 -35832510 + MADE1 DNA Mariner 49 80 0 207 217 0 0 chr12 108450075 108450135 -35832354 + GA-rich Low_complexity Low_complexity 3 62 0 22 0 0 0 chr12 108450189 108450211 -35832278 + AT_rich Low_complexity Low_complexity 1 22 0 299 352 152 29 chr12 108450306 108450887 -35831602 + L2 LINE L2 2412 3055 -217 2203 120 120 26 chr12 108451113 108451504 -35830985 - MSTA LTR MaLR 0 428 1 1145 238 47 26 chr12 108451527 108451871 -35830618 + MER87 LTR ERV1 168 518 -23 833 285 162 19 chr12 108452174 108452605 -35829884 - L2 LINE L2 -16 3297 2805 220 374 18 49 chr12 108452928 108453091 -35829398 - L2 LINE L2 -239 3033 2876 977 207 5 5 chr12 108453246 108453434 -35829055 + MER5A DNA MER1_type 1 188 -1 3309 106 21 27 chr12 108454233 108454399 -35828090 + L1PB3 LINE L1 5634 5799 -355 231 114 0 0 chr12 108454399 108454434 -35828055 + (TA)n Simple_repeat Simple_repeat 1 35 0 3309 106 21 27 chr12 108454434 108454788 -35827701 + L1PB3 LINE L1 5799 6151 -3 804 184 106 48 chr12 108455640 108455847 -35826642 - MER20 DNA MER1_type 0 219 1 2057 84 0 0 chr12 108455992 108456241 -35826248 - AluSg SINE Alu -24 286 38 1637 121 0 18 chr12 108457152 108457424 -35825065 + HERVH LTR ERV1 1878 2144 -5569 41011 32 21 0 chr12 108457434 108463459 -35819030 + L1HS LINE L1 1 6155 0 18458 27 0 0 chr12 108463455 108466538 -35815951 + L1PA2 LINE L1 3072 6155 0 * 254 28 0 28 chr12 108466602 108466638 -35815851 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1000 187 16 11 chr12 108466646 108466828 -35815661 - AluJb SINE Alu -43 269 87 1636 185 6 44 chr12 108466876 108467195 -35815294 - AluJo SINE Alu -3 309 3 21 0 0 0 chr12 108467197 108467218 -35815271 + AT_rich Low_complexity Low_complexity 1 21 0 297 225 88 12 chr12 108469049 108469209 -35813280 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 441 0 0 0 chr12 108469952 108470001 -35812488 + (TC)n Simple_repeat Simple_repeat 2 50 0 362 21 0 21 chr12 108470000 108470048 -35812441 + (TA)n Simple_repeat Simple_repeat 1 47 0 * 532 335 5 16 chr12 108470424 108470612 -35811877 + MER5A DNA MER1_type 3 188 -1 296 302 138 0 chr12 108470685 108470801 -35811688 - L2 LINE L2 -4 3309 3178 2115 106 0 11 chr12 108471301 108471607 -35810882 + AluSx SINE Alu 3 305 0 399 224 157 0 chr12 108472004 108472138 -35810351 + L2 LINE L2 2546 2700 -614 842 261 35 49 chr12 108472139 108472818 -35809671 + HAL1 LINE L1 1105 1860 -647 562 267 22 37 chr12 108473036 108473234 -35809255 - MIR SINE MIR -50 212 22 2913 84 33 2 chr12 108473766 108474217 -35808272 + L1PA16 LINE L1 5613 6157 -9 488 284 98 51 chr12 108474229 108474668 -35807821 - L2 LINE L2 -78 3235 2686 1781 132 75 0 chr12 108474800 108475081 -35807408 + AluSx SINE Alu 1 302 -10 1286 280 63 24 chr12 108475134 108475862 -35806627 + L1ME LINE L1 4748 5505 -657 234 291 46 120 chr12 108476429 108476604 -35805885 + L2 LINE L2 3111 3272 0 183 156 0 0 chr12 108478267 108478299 -35804190 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 255 254 182 9 chr12 108479913 108480023 -35802466 - MER117 DNA MER1_type -68 129 1 401 358 15 95 chr12 108481168 108481506 -35800983 - L2 LINE L2 -31 3241 2931 2158 199 81 41 chr12 108481707 108482266 -35800223 + L1MDa LINE L1 19 599 -5941 2876 154 105 4 chr12 108482268 108482802 -35799687 - LTR69 LTR ERVL 0 588 1 374 175 75 0 chr12 108484057 108484137 -35798352 + L1MD1 LINE L1 123 208 -6332 180 213 131 16 chr12 108484538 108484599 -35797890 - L2 LINE L2 -571 2743 2676 2531 139 52 5 chr12 108485612 108486135 -35796354 - LTR69 LTR ERVL -1 587 1 6427 204 96 38 chr12 108486135 108486999 -35795490 + L1MD1 LINE L1 847 1659 -4977 216 0 0 0 chr12 108486999 108487023 -35795466 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6427 204 96 38 chr12 108487023 108488838 -35793651 + L1MD1 LINE L1 1659 3367 -3269 381 93 0 0 chr12 108488838 108488892 -35793597 + (CA)n Simple_repeat Simple_repeat 2 55 0 6427 204 96 38 chr12 108488892 108491281 -35791208 + L1MD1 LINE L1 3367 6636 0 953 108 0 0 chr12 108492118 108492247 -35790242 - FLAM_C SINE Alu -4 129 1 231 165 152 13 chr12 108492281 108492360 -35790129 + L1ME4a LINE L1 6016 6105 -16 260 339 134 27 chr12 108492918 108493104 -35789385 - MIR SINE MIR -53 209 4 182 65 65 0 chr12 108493678 108493709 -35788780 + (CTAAT)n Simple_repeat Simple_repeat 4 36 0 2611 71 0 0 chr12 108494430 108494741 -35787748 - AluY SINE Alu 0 311 1 541 272 27 0 chr12 108495861 108496008 -35786481 + MIR SINE MIR 112 262 0 22 0 0 0 chr12 108496256 108496278 -35786211 + AT_rich Low_complexity Low_complexity 1 22 0 2057 126 10 0 chr12 108496963 108497264 -35785225 - AluSx SINE Alu -1 311 8 180 0 0 0 chr12 108497474 108497494 -35784995 + (T)n Simple_repeat Simple_repeat 1 20 0 790 276 66 8 chr12 108497950 108498193 -35784296 + MIR SINE MIR 6 262 0 588 199 167 6 chr12 108498196 108498352 -35784137 + MIR SINE MIR 72 252 -10 428 290 121 4 chr12 108499452 108499683 -35782806 + MIR SINE MIR 2 259 -3 1112 241 73 36 chr12 108499813 108500116 -35782373 + LTR16A LTR ERVL 128 441 -9 236 366 85 0 chr12 108501007 108501160 -35781329 + L2 LINE L2 2845 3010 -262 373 336 0 15 chr12 108501285 108501419 -35781070 - MIR SINE MIR -82 180 49 27 29 0 0 chr12 108502112 108502146 -35780343 + AT_rich Low_complexity Low_complexity 1 34 0 2299 101 0 7 chr12 108504356 108504663 -35777826 - AluSx SINE Alu -7 305 1 231 355 130 22 chr12 108505304 108505442 -35777047 - L2 LINE L2 -216 3056 2904 1758 139 10 43 chr12 108505860 108506161 -35776328 - AluJo SINE Alu -16 296 6 2157 111 10 3 chr12 108507085 108507383 -35775106 - AluSc SINE Alu -9 300 1 1452 59 0 39 chr12 108507403 108507607 -35774882 - L1PA13 LINE L1 -19 6144 5949 236 150 25 0 chr12 108507755 108507795 -35774694 + U6 snRNA snRNA 1 41 -66 293 297 71 16 chr12 108507846 108508028 -35774461 + L1MC4a LINE L1 6075 6266 -1542 655 239 11 57 chr12 108508186 108508362 -35774127 + MER5B DNA MER1_type 4 171 -7 1865 181 53 94 chr12 108508363 108509064 -35773425 + L1MC5 LINE L1 6877 7523 -438 * 3584 232 133 8 chr12 108509057 108510310 -35772179 + L1ME2 LINE L1 2463 3871 -2275 921 244 92 0 chr12 108510308 108510624 -35771865 + L1ME2 LINE L1 4137 4481 -1665 * 752 140 0 0 chr12 108510659 108510766 -35771723 - U6 snRNA snRNA 0 107 1 302 98 82 0 chr12 108510827 108510888 -35771601 - L1M LINE L1 -799 5363 5298 2027 207 25 127 chr12 108510955 108511791 -35770698 + L1ME2 LINE L1 5405 6155 -9 655 212 158 30 chr12 108511878 108512251 -35770238 + L1MC5 LINE L1 7511 7931 -30 30 27 0 0 chr12 108513926 108513963 -35768526 + AT_rich Low_complexity Low_complexity 1 37 0 183 243 27 0 chr12 108514183 108514220 -35768269 - L2 LINE L2 -61 3211 3174 2200 120 3 0 chr12 108514736 108515037 -35767452 - AluSx SINE Alu -10 302 1 898 208 46 38 chr12 108516098 108516338 -35766151 - L1ME1 LINE L1 -19 6147 5906 234 202 29 58 chr12 108516629 108516733 -35765756 + LTR67 LTR ERVL 428 528 -29 182 107 0 0 chr12 108516849 108516877 -35765612 - MIR3 SINE MIR -6 202 175 277 227 13 13 chr12 108517058 108517133 -35765356 - MIR SINE MIR -79 183 109 388 235 67 54 chr12 108518712 108518861 -35763628 + MIR SINE MIR 98 248 -14 291 210 16 0 chr12 108519081 108519143 -35763346 - Charlie8 DNA MER1_type -1006 1411 1349 * 355 265 20 46 chr12 108519141 108519292 -35763197 - Charlie8 DNA MER1_type -1926 491 345 262 203 38 76 chr12 108519385 108519464 -35763025 - Charlie8 DNA MER1_type -2214 203 128 746 227 92 10 chr12 108520155 108520362 -35762127 - MIR SINE MIR 0 262 39 284 292 137 52 chr12 108521980 108522213 -35760276 - MIR SINE MIR 0 262 10 212 135 67 11 chr12 108522689 108522778 -35759711 + (TA)n Simple_repeat Simple_repeat 1 94 0 315 281 94 0 chr12 108523031 108523159 -35759330 + MIR SINE MIR 67 206 -56 610 298 44 41 chr12 108523389 108523752 -35758737 - HAL1b LINE L1 -732 616 253 2261 117 0 3 chr12 108523865 108524173 -35758316 - AluSc SINE Alu -2 307 1 933 108 19 19 chr12 108525053 108525303 -35757186 + THE1C LTR MaLR 1 364 0 12165 102 11 1 chr12 108525303 108526867 -35755622 + THE1B-int LTR MaLR 1 1580 0 2376 138 30 25 chr12 108526867 108527228 -35755261 + THE1B LTR MaLR 1 363 -1 1576 269 44 26 chr12 108527381 108527882 -35754607 + L2 LINE L2 2804 3313 0 1037 252 31 28 chr12 108528087 108528543 -35753946 - MLT1J LTR MaLR -2 509 1 2209 110 0 0 chr12 108528978 108529269 -35753220 - AluSx SINE Alu -21 291 1 4539 183 42 12 chr12 108529278 108530254 -35752235 - L1MB3 LINE L1 -2 6181 5182 2776 10 0 0 chr12 108531050 108531348 -35751141 - AluYa5 SINE Alu -13 298 1 1975 127 19 29 chr12 108531527 108531842 -35750647 + AluSq SINE Alu 1 312 -1 1113 154 0 0 chr12 108531842 108532011 -35750478 + AluSg/x SINE Alu 134 302 -10 231 146 0 0 chr12 108532604 108532645 -35749844 + (TG)n Simple_repeat Simple_repeat 2 42 0 207 342 62 36 chr12 108532821 108532984 -35749505 + MIR SINE MIR 13 183 -25 704 324 159 8 chr12 108535373 108535756 -35746733 - L2 LINE L2 -410 2904 2464 569 291 96 9 chr12 108535818 108536048 -35746441 - MIR SINE MIR 0 262 13 1296 251 126 28 chr12 108536071 108536541 -35745948 - L2 LINE L2 -860 2454 1939 22 56 0 0 chr12 108536983 108537019 -35745470 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr12 108537052 108537072 -35745417 + (G)n Simple_repeat Simple_repeat 1 20 0 2660 40 0 0 chr12 108537294 108537594 -35744895 + AluY SINE Alu 1 300 -11 2662 112 22 0 chr12 108537675 108538031 -35744458 + THE1B LTR MaLR 1 364 0 2229 95 0 3 chr12 108538368 108538653 -35743836 - AluSx SINE Alu -27 285 2 28 48 0 0 chr12 108538765 108538807 -35743682 + AT_rich Low_complexity Low_complexity 1 42 0 508 279 45 83 chr12 108539813 108540329 -35742160 - HAL1 LINE L1 0 2507 2012 296 58 0 58 chr12 108540451 108540503 -35741986 + (TTTC)n Simple_repeat Simple_repeat 4 52 0 1571 75 0 5 chr12 108540723 108540923 -35741566 + L1PA3 LINE L1 5957 6155 0 9968 31 1 0 chr12 108540923 108542099 -35740390 + L1P LINE L1 3073 4252 -1894 8104 27 2 0 chr12 108542671 108543749 -35738740 + L1PA2 LINE L1 5074 6155 0 254 28 0 28 chr12 108543819 108543855 -35738634 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1013 181 16 11 chr12 108543863 108544045 -35738444 - AluJb SINE Alu -43 269 87 1649 172 6 56 chr12 108544091 108544411 -35738078 - AluJo SINE Alu -6 306 3 180 0 0 0 chr12 108544483 108544503 -35737986 + (A)n Simple_repeat Simple_repeat 1 20 0 210 37 0 0 chr12 108544853 108544880 -35737609 + (A)n Simple_repeat Simple_repeat 1 27 0 2317 89 0 13 chr12 108544982 108545296 -35737193 - AluSx SINE Alu -2 310 1 292 295 54 0 chr12 108545809 108545921 -35736568 - MIR SINE MIR -138 124 7 1477 234 174 1 chr12 108546046 108546434 -35736055 + MLT2B1 LTR ERVL 3 515 -39 459 0 0 0 chr12 108546434 108546485 -35736004 + (TG)n Simple_repeat Simple_repeat 2 52 0 1477 234 174 1 chr12 108546485 108546508 -35735981 + MLT2B1 LTR ERVL 515 533 -21 1681 162 67 52 chr12 108546626 108547027 -35735462 + LTR52 LTR ERVL 1 407 -14 227 218 69 11 chr12 108547431 108547518 -35734971 - THE1B LTR MaLR -256 108 17 2296 109 0 0 chr12 108548413 108548715 -35733774 + AluY SINE Alu 6 307 -4 21 36 0 0 chr12 108548918 108548946 -35733543 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 108549059 108549082 -35733407 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr12 108549084 108549105 -35733384 + (G)n Simple_repeat Simple_repeat 1 21 0 7972 52 18 1 chr12 108549229 108550332 -35732157 + L1P1 LINE L1 4392 5518 -637 1499 269 48 26 chr12 108550447 108550946 -35731543 - L2 LINE L2 0 3313 2804 930 257 80 21 chr12 108551099 108551426 -35731063 - THE1B LTR MaLR -1 363 18 199 299 110 8 chr12 108551822 108551949 -35730540 + MIR SINE MIR 67 206 -56 527 298 38 59 chr12 108552179 108552551 -35729938 - HAL1b LINE L1 -732 616 253 3608 242 52 16 chr12 108553859 108554721 -35727768 + L1M4 LINE L1 2788 3703 -2443 399 89 0 0 chr12 108554721 108554777 -35727712 + (CA)n Simple_repeat Simple_repeat 2 57 0 3608 242 52 16 chr12 108554777 108555063 -35727426 + L1M4 LINE L1 3703 3977 -2169 1972 186 69 12 chr12 108555336 108556012 -35726477 - L1M3 LINE L1 -630 5553 4848 650 163 0 0 chr12 108556322 108556420 -35726069 + FRAM SINE Alu 18 115 -61 252 300 44 22 chr12 108557657 108557747 -35724742 + L2 LINE L2 3154 3245 -27 254 178 45 198 chr12 108558657 108558814 -35723675 + HAL1 LINE L1 59 191 -2316 2150 121 31 97 chr12 108558896 108559286 -35723203 + THE1B LTR MaLR 1 364 0 3642 245 65 52 chr12 108559399 108560770 -35721719 + HAL1 LINE L1 384 1771 -736 319 270 26 69 chr12 108560775 108560964 -35721525 + HAL1 LINE L1 1845 2025 -482 610 269 95 84 chr12 108561006 108561646 -35720843 + L1ME3A LINE L1 5479 6125 -45 1149 272 91 52 chr12 108561680 108562239 -35720250 + HAL1 LINE L1 17 597 -1910 839 258 37 12 chr12 108562239 108562564 -35719925 - HAL1 LINE L1 -509 1998 1610 225 253 67 27 chr12 108562577 108562652 -35719837 - HAL1 LINE L1 -1729 778 701 257 244 15 15 chr12 108562669 108562800 -35719689 + CT-rich Low_complexity Low_complexity 2 132 0 1704 174 14 3 chr12 108562837 108563124 -35719365 + AluJb SINE Alu 7 296 -16 184 293 158 24 chr12 108563124 108563206 -35719283 + L2 LINE L2 3213 3305 -8 1317 264 122 21 chr12 108563368 108563837 -35718652 + L2 LINE L2 1939 2454 -860 547 296 96 9 chr12 108563860 108564090 -35718399 + MIR SINE MIR 13 262 0 717 321 159 8 chr12 108564152 108564535 -35717954 + L2 LINE L2 2464 2904 -410 25 0 0 0 chr12 108566153 108566178 -35716311 + AT_rich Low_complexity Low_complexity 1 25 0 1486 129 0 40 chr12 108566224 108566476 -35716013 + AluSg/x SINE Alu 69 311 0 21 0 0 0 chr12 108566631 108566652 -35715837 + AT_rich Low_complexity Low_complexity 1 21 0 241 239 30 63 chr12 108566666 108566787 -35715702 + MIR SINE MIR 22 147 -61 1879 154 3 7 chr12 108566940 108567232 -35715257 + AluSx SINE Alu 1 291 -21 421 247 0 0 chr12 108568065 108568154 -35714335 + MIR SINE MIR 168 256 -6 2115 123 27 135 chr12 108569041 108569521 -35712968 - MSTA LTR MaLR 0 428 1 340 261 0 70 chr12 108569586 108569701 -35712788 - L1MC4 LINE L1 -1322 6720 6614 * 367 278 0 0 chr12 108569625 108569715 -35712774 + L1MC4 LINE L1 6614 6703 -1339 243 0 0 0 chr12 108569715 108569742 -35712747 + (TA)n Simple_repeat Simple_repeat 1 27 0 977 160 0 13 chr12 108569748 108569904 -35712585 + AluJo SINE Alu 23 176 -136 971 258 37 76 chr12 108571349 108571865 -35710624 - HAL1 LINE L1 0 2507 2012 507 33 0 0 chr12 108572002 108572063 -35710426 + (TTTC)n Simple_repeat Simple_repeat 4 64 0 246 57 57 19 chr12 108572276 108572283 -35710206 + (TAAA)n Simple_repeat Simple_repeat 2 7 -49 1772 36 0 0 chr12 108572283 108572479 -35710010 + L1PA3 LINE L1 5957 6152 -3 246 57 57 19 chr12 108572479 108572524 -35709965 + (TAAA)n Simple_repeat Simple_repeat 7 56 0 315 315 115 8 chr12 108573194 108573324 -35709165 + MARNA DNA Mariner 43 186 -400 284 135 39 0 chr12 108573333 108573385 -35709104 - MER53 DNA DNA 0 189 136 * 433 165 52 10 chr12 108573362 108573459 -35709030 + MER53 DNA DNA 77 177 -12 574 260 112 5 chr12 108573566 108573762 -35708727 - MARNA DNA Mariner -237 349 133 978 174 39 0 chr12 108573769 108573924 -35708565 - FRAM SINE Alu -4 162 2 2685 233 55 30 chr12 108574851 108575787 -35706702 + L1ME3A LINE L1 5088 6045 -125 4189 159 66 69 chr12 108575789 108576812 -35705677 + MER52C LTR ERV1 9 1277 -1 317 183 165 26 chr12 108576812 108576927 -35705562 + L1ME3A LINE L1 6039 6169 -1 1792 192 102 32 chr12 108577028 108577439 -35705050 - LTR47B LTR ERVL 0 443 4 345 282 61 80 chr12 108577461 108577674 -35704815 + MLT1K LTR MaLR 2 210 -378 480 214 29 0 chr12 108577794 108577897 -35704592 + MLT1K LTR MaLR 483 588 0 2344 233 65 26 chr12 108578027 108578598 -35703891 - MLT1E LTR MaLR 0 593 1 2431 79 0 0 chr12 108579015 108579318 -35703171 + AluY SINE Alu 1 303 -8 239 191 92 7 chr12 108579358 108579499 -35702990 + (TA)n Simple_repeat Simple_repeat 1 153 0 1674 198 50 20 chr12 108579544 108579887 -35702602 - LTR42 LTR ERVL -135 360 8 940 230 157 37 chr12 108580622 108580922 -35701567 + MLT1K LTR MaLR 3 338 -250 223 263 163 12 chr12 108581276 108581356 -35701133 + L3 LINE CR1 1366 1457 -120 322 301 44 0 chr12 108581362 108581475 -35701014 - MIR SINE MIR -138 124 7 1416 208 63 113 chr12 108581591 108581981 -35700508 + MLT2B1 LTR ERVL 1 370 -44 459 0 0 0 chr12 108581981 108582032 -35700457 + (TG)n Simple_repeat Simple_repeat 2 52 0 1416 208 63 113 chr12 108582032 108582055 -35700434 + MLT2B1 LTR ERVL 370 393 -21 1883 156 61 51 chr12 108582173 108582583 -35699906 + LTR52 LTR ERVL 1 414 -7 221 228 185 43 chr12 108582590 108582682 -35699807 + MIR SINE MIR 139 243 -19 21 36 0 0 chr12 108582764 108582792 -35699697 + AT_rich Low_complexity Low_complexity 1 28 0 574 256 61 98 chr12 108584011 108584551 -35697938 - MER113 DNA MER1_type? -1 520 1 2366 87 0 3 chr12 108584861 108585160 -35697329 + AluSq SINE Alu 1 298 -15 220 232 0 18 chr12 108585553 108585609 -35696880 - MIR SINE MIR -3 259 205 * 264 128 0 0 chr12 108585602 108585641 -35696848 + MIR SINE MIR 218 256 -6 231 194 14 97 chr12 108586245 108586317 -35696172 + L2 LINE L2 3207 3272 0 1909 137 3 3 chr12 108586322 108586607 -35695882 + AluSx SINE Alu 12 296 -16 261 203 59 102 chr12 108586668 108586786 -35695703 - MIR SINE MIR -3 259 147 1501 120 89 104 chr12 108586933 108587249 -35695240 - AluY SINE Alu 0 311 1 542 294 7 14 chr12 108587255 108587401 -35695088 - MIR SINE MIR -116 146 2 236 258 163 52 chr12 108588244 108588426 -35694063 + L1ME4a LINE L1 5861 6077 -44 2220 95 0 3 chr12 108588426 108588739 -35693750 + AluSx SINE Alu 2 313 0 236 258 163 52 chr12 108588739 108588788 -35693701 + L1ME4a LINE L1 6077 6119 -2 598 238 127 24 chr12 108588895 108589117 -35693372 - MIR SINE MIR -10 252 10 2154 118 0 19 chr12 108589237 108589551 -35692938 - AluY SINE Alu -3 308 1 453 222 70 76 chr12 108590324 108590495 -35691994 - MER69A DNA AcHobo 0 177 8 1771 165 3 7 chr12 108590552 108590837 -35691652 + AluJb SINE Alu 1 284 -28 265 162 15 88 chr12 108590977 108591045 -35691444 - MER81 DNA DNA -2 112 50 249 208 38 0 chr12 108591186 108591239 -35691250 - MIR SINE MIR -147 115 61 472 234 106 28 chr12 108591676 108591817 -35690672 + MER63A DNA MER1_type 59 210 0 2005 128 10 17 chr12 108591968 108592266 -35690223 + AluSx SINE Alu 3 298 -14 410 254 59 25 chr12 108592545 108592663 -35689826 - MIR SINE MIR -68 140 19 227 273 0 39 chr12 108592891 108592968 -35689521 - LTR16C LTR ERVL -10 481 408 250 186 0 86 chr12 108593086 108593156 -35689333 + MER81 DNA DNA 50 113 -1 1533 234 79 79 chr12 108593361 108593534 -35688955 - LTR38 LTR ERV1 0 556 384 1924 141 3 34 chr12 108593534 108593854 -35688635 + AluJb SINE Alu 1 310 -2 1533 234 79 79 chr12 108593854 108594290 -35688199 - LTR38 LTR ERV1 -171 385 1 419 385 150 4 chr12 108594590 108594824 -35687665 - L2 LINE L2 -1 3271 3004 559 299 11 6 chr12 108594840 108595014 -35687475 - MIR SINE MIR 0 262 88 1081 175 43 33 chr12 108595025 108595236 -35687253 + MLT1J2 LTR MaLR 3 215 -235 767 93 29 14 chr12 108595264 108595404 -35687085 + CT-rich Low_complexity Low_complexity 2 143 0 1632 194 3 28 chr12 108595411 108595730 -35686759 - AluJo SINE Alu -1 311 1 1540 208 6 24 chr12 108595730 108596062 -35686427 - MER4D LTR ERV1 -26 877 552 1604 194 17 7 chr12 108596090 108596384 -35686105 - MER49 LTR ERV1 -626 297 1 2457 81 7 0 chr12 108596446 108596755 -35685734 + AluSx SINE Alu 1 311 -1 213 121 0 0 chr12 108596762 108596795 -35685694 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 300 200 13 53 chr12 108596869 108596944 -35685545 + MLT1J1 LTR MaLR 355 422 -24 430 178 8 78 chr12 108597345 108597474 -35685015 - LTR33A LTR ERVL 0 523 404 632 239 37 0 chr12 108597652 108597786 -35684703 + MLT1G LTR MaLR 9 147 -443 32 0 0 0 chr12 108597786 108597818 -35684671 + AT_rich Low_complexity Low_complexity 1 32 0 910 67 8 0 chr12 108597818 108597937 -35684552 - L1PA8 LINE L1 -1 6171 6052 28435 29 1 4 chr12 108597937 108602050 -35680439 - L1PA4 LINE L1 -5 6150 2054 774 122 84 0 chr12 108602046 108602177 -35680312 - L1PA8 LINE L1 -104 6068 5927 * 788 209 47 7 chr12 108602189 108602337 -35680152 + MLT1G LTR MaLR 134 287 -303 * 951 181 191 18 chr12 108602336 108602618 -35679871 + MLT1J2 LTR MaLR 175 505 0 226 234 21 0 chr12 108602619 108602666 -35679823 + L2 LINE L2 3224 3271 -1 499 220 254 6 chr12 108602865 108603038 -35679451 - MIR SINE MIR -1 261 46 2386 94 3 0 chr12 108603039 108603346 -35679143 + AluSp SINE Alu 1 308 -5 406 287 42 21 chr12 108603452 108603595 -35678894 + MIR3 SINE MIR 35 180 -28 1466 221 105 50 chr12 108603792 108604230 -35678259 + MLT1H LTR MaLR 1 462 -87 390 232 0 0 chr12 108604386 108604468 -35678021 - MLT1K LTR MaLR -21 567 486 392 252 114 110 chr12 108604547 108604864 -35677625 - MLT1J LTR MaLR -193 318 1 677 229 83 10 chr12 108604873 108605065 -35677424 + L2 LINE L2 3108 3313 0 4053 159 80 11 chr12 108605286 108606271 -35676218 - L1MC2 LINE L1 0 6344 5171 251 286 48 0 chr12 108606528 108606591 -35675898 - MIR SINE MIR -114 94 29 1104 236 107 41 chr12 108606749 108607113 -35675376 - MLT1K LTR MaLR -17 571 184 2398 107 6 38 chr12 108607218 108607565 -35674924 + MER1B DNA MER1_type 2 337 0 2166 124 7 0 chr12 108607614 108607920 -35674569 - AluSx SINE Alu -4 308 1 207 229 344 10 chr12 108607983 108608079 -35674410 + MIR SINE MIR 19 146 -62 3425 142 44 32 chr12 108608087 108608252 -35674237 + L1MA4 LINE L1 4698 4860 -1320 2107 128 7 3 chr12 108608252 108608549 -35673940 - AluSx SINE Alu -14 298 1 3425 142 44 32 chr12 108608549 108609128 -35673361 + L1MA4 LINE L1 4860 5437 -743 787 90 10 0 chr12 108609128 108609228 -35673261 + FRAM SINE Alu 24 124 -52 5381 152 10 2 chr12 108609278 108610142 -35672347 + L1MA4 LINE L1 5430 6300 0 350 267 100 67 chr12 108610237 108610311 -35672178 - MIR SINE MIR 0 262 192 1003 188 21 5 chr12 108610311 108610497 -35671992 - MER5A DNA MER1_type 0 189 1 350 267 100 67 chr12 108610497 108610632 -35671857 - MIR SINE MIR -70 192 46 396 0 0 0 chr12 108610994 108611038 -35671451 + (TG)n Simple_repeat Simple_repeat 2 45 0 2183 100 0 0 chr12 108611122 108611432 -35671057 + AluSx SINE Alu 3 312 0 514 254 15 37 chr12 108611676 108611810 -35670679 - Charlie8 DNA MER1_type -2194 223 93 24 0 0 0 chr12 108611849 108611873 -35670616 + AT_rich Low_complexity Low_complexity 1 24 0 1534 215 3 13 chr12 108611892 108612199 -35670290 + AluJo SINE Alu 2 305 -7 480 268 42 14 chr12 108612459 108612601 -35669888 - MIR SINE MIR -98 164 19 604 105 48 38 chr12 108612690 108612795 -35669694 + FLAM_A SINE Alu 32 137 -5 317 53 0 0 chr12 108612968 108613006 -35669483 - U2 snRNA snRNA -150 38 1 195 167 0 0 chr12 108613114 108613144 -35669345 - MIR SINE MIR -63 145 116 462 262 11 75 chr12 108613299 108613486 -35669003 + L2 LINE L2 2937 3111 -161 185 174 0 22 chr12 108613489 108613535 -35668954 + CT-rich Low_complexity Low_complexity 4 48 0 1833 167 10 3 chr12 108613537 108613830 -35668659 - AluJb SINE Alu -17 295 1 190 333 141 0 chr12 108614244 108614343 -35668146 - L2 LINE L2 -1 3312 3200 366 250 25 0 chr12 108614443 108614523 -35667966 - MIR SINE MIR -103 159 78 * 637 271 92 23 chr12 108614519 108614737 -35667752 - MIR SINE MIR -28 234 2 22 35 0 0 chr12 108615169 108615198 -35667291 + AT_rich Low_complexity Low_complexity 1 29 0 277 358 44 0 chr12 108615283 108615420 -35667069 + L2 LINE L2 1801 1943 -1371 301 278 35 52 chr12 108615539 108615654 -35666835 + L2 LINE L2 2237 2349 -965 1256 172 53 0 chr12 108615656 108615774 -35666715 + AluJo SINE Alu 3 138 -174 207 0 0 0 chr12 108615774 108615797 -35666692 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1256 172 53 0 chr12 108615797 108615887 -35666602 + AluJo SINE Alu 138 222 -90 305 226 0 0 chr12 108615936 108615998 -35666491 + L2 LINE L2 3252 3313 0 35 0 0 0 chr12 108616013 108616048 -35666441 + AT_rich Low_complexity Low_complexity 1 35 0 221 240 213 13 chr12 108616196 108616271 -35666218 + MIR SINE MIR 5 94 -168 2243 84 3 7 chr12 108616313 108616612 -35665877 + AluSx SINE Alu 1 298 -14 363 221 0 13 chr12 108618211 108618288 -35664201 - MER3 DNA MER1_type -124 85 10 294 288 126 18 chr12 108618409 108618520 -35663969 + MIR3 SINE MIR 86 208 0 2303 113 0 0 chr12 108618525 108618834 -35663655 - AluSc SINE Alu 0 309 1 479 290 80 128 chr12 108619058 108620072 -35662417 - L2 LINE L2 -181 3091 2129 840 257 44 24 chr12 108620131 108620380 -35662109 - MLT1H LTR MaLR -239 310 57 21 0 0 0 chr12 108620530 108620551 -35661938 + AT_rich Low_complexity Low_complexity 1 21 0 664 198 17 0 chr12 108620562 108620678 -35661811 - FLAM_C SINE Alu -15 118 1 23 33 0 0 chr12 108620716 108620746 -35661743 + AT_rich Low_complexity Low_complexity 1 30 0 3088 132 18 4 chr12 108620916 108621410 -35661079 - L1PA16 LINE L1 -3 6163 5663 203 143 0 24 chr12 108621442 108621484 -35661005 + (CATA)n Simple_repeat Simple_repeat 3 43 0 255 255 37 28 chr12 108621790 108621948 -35660541 - L1MC/D LINE L1 -302 5819 5682 246 193 0 70 chr12 108624394 108624451 -35658038 - L2 LINE L2 0 3313 3261 340 328 98 16 chr12 108624573 108624695 -35657794 - L2 LINE L2 0 3313 3182 336 264 36 36 chr12 108624728 108624838 -35657651 - L2 LINE L2 -432 2882 2773 292 301 54 0 chr12 108625034 108625127 -35657362 - L2 LINE L2 -6 3266 3169 611 213 15 15 chr12 108625194 108625330 -35657159 + MIR SINE MIR 78 213 -49 2115 118 0 0 chr12 108625921 108626200 -35656289 + AluSx SINE Alu 1 279 -33 258 32 0 0 chr12 108626202 108626233 -35656256 + (CA)n Simple_repeat Simple_repeat 1 31 0 204 40 0 0 chr12 108626233 108626258 -35656231 + (TAA)n Simple_repeat Simple_repeat 1 25 0 29 70 0 0 chr12 108626613 108626670 -35655819 + AT_rich Low_complexity Low_complexity 1 57 0 824 248 54 5 chr12 108627918 108628101 -35654388 + MIR SINE MIR 29 226 -36 2287 76 52 0 chr12 108628101 108628391 -35654098 + AluSp SINE Alu 1 305 -8 824 248 54 5 chr12 108628391 108628429 -35654060 + MIR SINE MIR 226 261 -1 278 252 64 110 chr12 108628936 108629154 -35653335 - L2 LINE L2 -4 3309 3102 219 333 40 40 chr12 108629359 108629485 -35653004 - L2 LINE L2 -202 3070 2945 22 35 0 0 chr12 108630709 108630738 -35651751 + AT_rich Low_complexity Low_complexity 1 29 0 2097 90 0 0 chr12 108630852 108631119 -35651370 - AluY SINE Alu 0 311 45 1302 239 169 46 chr12 108631119 108631364 -35651125 - HAL1 LINE L1 -140 2367 2153 2261 114 0 3 chr12 108631364 108631672 -35650817 - AluSx SINE Alu -5 307 1 1302 239 169 46 chr12 108631672 108632266 -35650223 - HAL1 LINE L1 -354 2153 1425 358 223 203 58 chr12 108632512 108632767 -35649722 + L1ME4a LINE L1 5774 6053 -112 1382 207 18 30 chr12 108632783 108633116 -35649373 - L1MD2 LINE L1 -13 6346 6018 2580 62 0 0 chr12 108633118 108633427 -35649062 + AluY SINE Alu 1 309 -2 1101 119 0 0 chr12 108633427 108633608 -35648881 + AluY SINE Alu 133 313 0 1866 168 7 0 chr12 108634037 108634335 -35648154 - AluJb SINE Alu -5 307 8 529 325 138 8 chr12 108634990 108635466 -35647023 - L2 LINE L2 -39 3274 2718 183 100 0 0 chr12 108635684 108635714 -35646775 + (T)n Simple_repeat Simple_repeat 1 30 0 428 309 27 13 chr12 108637282 108637431 -35645058 + L2 LINE L2 2932 3082 -190 437 227 0 59 chr12 108637636 108637755 -35644734 - MER3 DNA MER1_type -97 112 1 774 256 0 53 chr12 108637770 108637997 -35644492 - MER58C DNA MER1_type 0 215 1 694 111 0 0 chr12 108638078 108638177 -35644312 + FLAM_C SINE Alu 13 111 -32 2139 124 0 0 chr12 108638214 108638519 -35643970 + AluSx SINE Alu 1 305 0 1696 165 11 18 chr12 108638749 108639059 -35643430 - AluJb SINE Alu 0 308 1 1154 233 96 46 chr12 108639987 108640626 -35641863 - L2 LINE L2 0 3313 2654 366 252 48 29 chr12 108641031 108641134 -35641355 + MIR SINE MIR 7 111 -151 265 222 62 49 chr12 108641360 108641441 -35641048 + L2 LINE L2 2692 2773 -541 731 204 6 12 chr12 108641442 108641609 -35640880 + MER20 DNA MER1_type 54 219 0 708 241 101 116 chr12 108641609 108642193 -35640296 + L2 LINE L2 2742 3307 -6 374 348 8 0 chr12 108642197 108642315 -35640174 - MIR SINE MIR -143 119 1 244 247 82 27 chr12 108642315 108642362 -35640127 + L2 LINE L2 3206 3256 -16 257 101 34 67 chr12 108642370 108642459 -35640030 + (TATAA)n Simple_repeat Simple_repeat 5 90 0 355 239 11 11 chr12 108642514 108642606 -35639883 + MIR SINE MIR 54 145 -63 332 348 11 53 chr12 108643014 108643201 -35639288 + MER5A DNA MER1_type 1 179 -10 2519 43 0 16 chr12 108643720 108644023 -35638466 + AluY SINE Alu 1 298 -13 279 0 0 0 chr12 108644123 108644154 -35638335 + (CA)n Simple_repeat Simple_repeat 2 32 0 1978 150 10 0 chr12 108644212 108644505 -35637984 - AluSx SINE Alu -16 296 1 416 293 56 36 chr12 108644508 108644757 -35637732 - L1MC4a LINE L1 -1978 5830 5577 24 32 0 0 chr12 108645262 108645293 -35637196 + AT_rich Low_complexity Low_complexity 1 31 0 2385 67 0 3 chr12 108645563 108645861 -35636628 - AluY SINE Alu -14 297 1 2318 105 3 0 chr12 108647122 108647427 -35635062 + AluSp SINE Alu 1 306 -7 334 289 141 7 chr12 108648345 108648480 -35634009 - L1ME4a LINE L1 -5 6185 6033 2053 91 25 4 chr12 108649247 108649568 -35632921 - AluSp SINE Alu 0 327 1 3182 264 74 85 chr12 108650078 108651205 -35631284 - L2 LINE L2 -377 2937 1800 2460 74 0 0 chr12 108651205 108651501 -35630988 + AluY SINE Alu 1 296 -15 3182 264 74 85 chr12 108651501 108651647 -35630842 - L2 LINE L2 -1514 1800 1654 1929 100 36 25 chr12 108651647 108651926 -35630563 + AluSx SINE Alu 1 282 -30 3182 264 74 85 chr12 108651926 108652032 -35630457 - L2 LINE L2 -1660 1654 1548 2279 107 0 0 chr12 108652032 108652323 -35630166 + AluSg SINE Alu 1 291 -19 3182 264 74 85 chr12 108652323 108652473 -35630016 - L2 LINE L2 -1766 1548 1422 253 338 0 0 chr12 108653077 108653157 -35629332 - MIR SINE MIR 0 262 183 390 312 280 20 chr12 108653604 108653947 -35628542 + L3 LINE CR1 722 1153 -424 293 317 151 5 chr12 108654018 108654217 -35628272 + L3 LINE CR1 1343 1570 -7 239 250 66 13 chr12 108654700 108654776 -35627713 - MIR3 SINE MIR -17 191 112 187 274 253 0 chr12 108655212 108655307 -35627182 - L2 LINE L2 -1 3271 3153 2304 117 0 0 chr12 108655379 108655679 -35626810 + AluSx SINE Alu 3 302 -10 452 184 0 0 chr12 108655817 108655893 -35626596 + Tigger7 DNA MER2_type 1 76 -2411 2063 148 0 0 chr12 108657102 108657400 -35625089 + AluSx SINE Alu 1 298 -14 893 204 5 21 chr12 108658559 108658745 -35623744 - AluJb SINE Alu -1 311 129 2309 91 0 3 chr12 108658818 108659116 -35623373 - AluSx SINE Alu -13 299 3 26 0 0 0 chr12 108659157 108659183 -35623306 + AT_rich Low_complexity Low_complexity 1 26 0 283 267 144 83 chr12 108659879 108660419 -35622070 - L1ME4a LINE L1 -158 6032 5460 383 316 56 28 chr12 108660465 108660680 -35621809 - L1ME4a LINE L1 -1037 5178 4958 1336 111 0 25 chr12 108660680 108660879 -35621610 + AluSg SINE Alu 1 194 -116 2100 107 0 0 chr12 108661643 108661924 -35620565 - AluSx SINE Alu -31 281 1 372 243 9 0 chr12 108661924 108662035 -35620454 - L1ME4a LINE L1 -3988 2408 2297 1173 170 0 113 chr12 108662177 108662495 -35619994 - AluSx SINE Alu -30 282 1 418 292 108 21 chr12 108663007 108663270 -35619219 + L2 LINE L2 2713 3049 -264 2607 191 170 25 chr12 108663296 108664044 -35618445 + Charlie1a DNA MER1_type 68 923 -532 772 184 0 0 chr12 108664687 108664812 -35617677 - FLAM_A SINE Alu -8 125 1 229 322 167 0 chr12 108665549 108665639 -35616850 - L2 LINE L2 0 3272 3168 750 271 38 33 chr12 108665740 108665980 -35616509 - MIR SINE MIR 0 262 22 2220 113 0 0 chr12 108666511 108666811 -35615678 + AluSx SINE Alu 1 300 -12 268 224 32 104 chr12 108666906 108667031 -35615458 + MIR SINE MIR 95 210 -52 884 196 12 41 chr12 108667525 108667673 -35614816 + L1MEc LINE L1 778 918 -5478 1538 174 36 11 chr12 108667673 108667948 -35614541 + AluJo SINE Alu 28 309 -3 884 196 12 41 chr12 108667948 108668044 -35614445 + L1MEc LINE L1 918 1015 -5381 758 312 122 20 chr12 108668071 108668515 -35613974 - L2 LINE L2 -209 3104 2619 2330 90 3 0 chr12 108669980 108670280 -35612209 + AluSp SINE Alu 1 301 -12 1792 94 0 17 chr12 108671654 108671888 -35610601 - AluSx SINE Alu -82 230 1 1794 172 23 0 chr12 108672620 108672923 -35609566 + AluJo SINE Alu 1 310 -2 265 268 72 0 chr12 108673598 108673695 -35608794 - L1ME4a LINE L1 -195 5926 5823 350 293 38 0 chr12 108674381 108674487 -35608002 + MER94 DNA DNA 1 110 -24 580 230 105 7 chr12 108674925 108675077 -35607412 + MIR SINE MIR 1 167 -95 533 253 198 0 chr12 108675625 108675787 -35606702 + MIR SINE MIR 20 213 -49 2294 85 0 0 chr12 108676955 108677273 -35605216 + AluSx SINE Alu 1 318 0 289 292 143 23 chr12 108677923 108678113 -35604376 + MIR SINE MIR 22 232 -30 21 0 0 0 chr12 108679632 108679653 -35602836 + AT_rich Low_complexity Low_complexity 1 21 0 2400 92 0 6 chr12 108679827 108680167 -35602322 - AluSq SINE Alu 0 338 1 1427 199 48 9 chr12 108680405 108680514 -35601975 - MER2 DNA MER2_type 0 344 241 2174 131 0 0 chr12 108680514 108680819 -35601670 + AluSg SINE Alu 1 305 -5 1427 199 48 9 chr12 108680819 108681040 -35601449 - MER2 DNA MER2_type -103 241 1 24 0 0 0 chr12 108681998 108682022 -35600467 + AT_rich Low_complexity Low_complexity 1 24 0 1057 148 35 57 chr12 108682228 108682407 -35600082 + L1MB7 LINE L1 5936 6110 -74 1992 133 7 10 chr12 108682407 108682701 -35599788 - AluSx SINE Alu -19 293 1 1057 148 35 57 chr12 108682701 108682751 -35599738 + L1MB7 LINE L1 6110 6160 -24 2303 98 0 13 chr12 108683824 108684139 -35598350 - AluSx SINE Alu -1 311 1 24 53 0 0 chr12 108684495 108684533 -35597956 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr12 108684741 108684766 -35597723 + AT_rich Low_complexity Low_complexity 1 25 0 2150 94 0 21 chr12 108685330 108685648 -35596841 + AluSg SINE Alu 1 312 0 283 156 0 0 chr12 108685822 108685867 -35596622 - MER57A LTR ERV1 -64 339 295 2366 103 3 0 chr12 108686151 108686462 -35596027 - AluSp SINE Alu -1 312 1 462 301 55 58 chr12 108687180 108687417 -35595072 + L2 LINE L2 2884 3120 -193 802 134 16 0 chr12 108687417 108687544 -35594945 - FLAM_C SINE Alu 0 133 5 462 301 55 58 chr12 108687544 108687584 -35594905 + L2 LINE L2 3120 3159 -154 2251 90 0 26 chr12 108687584 108687895 -35594594 + AluSx SINE Alu 1 303 -9 462 301 55 58 chr12 108687895 108687945 -35594544 + L2 LINE L2 3159 3211 -102 2165 108 3 46 chr12 108688277 108688602 -35593887 - AluSx SINE Alu -1 311 1 2046 113 41 3 chr12 108689079 108689370 -35593119 + AluSx SINE Alu 1 302 -10 438 200 0 0 chr12 108689370 108689445 -35593044 - FRAM SINE Alu -30 146 72 458 110 96 0 chr12 108689481 108689554 -35592935 - FLAM SINE Alu -19 124 45 538 252 115 53 chr12 108689645 108690168 -35592321 + L1ME4a LINE L1 5515 6069 -52 21 0 0 0 chr12 108690182 108690203 -35592286 + AT_rich Low_complexity Low_complexity 1 21 0 216 86 0 0 chr12 108691563 108691598 -35590891 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 195 42 0 0 chr12 108694818 108694842 -35587647 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chr12 108695243 108695274 -35587215 + AT_rich Low_complexity Low_complexity 1 31 0 272 89 0 22 chr12 108696927 108696972 -35585517 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 214 278 0 19 chr12 108704945 108704999 -35577490 + CT-rich Low_complexity Low_complexity 1 53 0 360 265 66 73 chr12 108708552 108708631 -35573858 - L2 LINE L2 -4 3268 3190 183 42 0 0 chr12 108708631 108708655 -35573834 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1976 153 3 0 chr12 108708657 108708945 -35573544 - AluSx SINE Alu -23 289 1 360 265 66 73 chr12 108708945 108708998 -35573491 - L2 LINE L2 -83 3189 3134 6135 130 28 7 chr12 108709026 108710505 -35571984 + L1MA4 LINE L1 4775 6289 -11 335 267 175 0 chr12 108710585 108710705 -35571784 + MIR3 SINE MIR 64 204 -4 2607 36 0 3 chr12 108711140 108711443 -35571046 - AluY SINE Alu -9 302 1 239 29 57 0 chr12 108711469 108711504 -35570985 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 1420 147 13 13 chr12 108711691 108711916 -35570573 + AluJb SINE Alu 67 291 -21 21 36 0 0 chr12 108712627 108712655 -35569834 + AT_rich Low_complexity Low_complexity 1 28 0 1827 140 11 21 chr12 108712683 108713001 -35569488 - AluSq SINE Alu 0 315 1 856 69 5 0 chr12 108713066 108713248 -35569241 - L1PB2 LINE L1 -2 6149 5928 2075 141 7 0 chr12 108713661 108713960 -35568529 + AluSx SINE Alu 1 301 -11 836 121 0 0 chr12 108714030 108714146 -35568343 - AluSg/x SINE Alu -19 291 176 1301 87 0 0 chr12 108714279 108714440 -35568049 + AluSg/x SINE Alu 137 297 -13 2015 121 4 0 chr12 108714636 108714908 -35567581 - AluSx SINE Alu -39 273 1 328 206 0 0 chr12 108715265 108715333 -35567156 + MIR SINE MIR 195 262 0 399 241 155 69 chr12 108715532 108715706 -35566783 - MIR SINE MIR -27 235 47 311 272 37 12 chr12 108715707 108715788 -35566701 + L2 LINE L2 3226 3308 -5 2051 138 7 0 chr12 108715799 108716089 -35566400 + AluSx SINE Alu 1 292 -20 1942 103 57 29 chr12 108716398 108716679 -35565810 - AluSx SINE Alu -23 289 1 413 308 59 34 chr12 108716830 108717067 -35565422 + L2 LINE L2 2939 3181 -132 2131 122 3 0 chr12 108717146 108717467 -35565022 - AluSp SINE Alu 0 322 1 2119 116 7 3 chr12 108717470 108717764 -35564725 - AluSx SINE Alu -17 295 1 828 120 0 0 chr12 108717764 108717872 -35564617 - AluSq/x SINE Alu -177 135 28 1998 117 40 0 chr12 108718517 108718817 -35563672 - AluSx SINE Alu 0 312 1 386 273 31 16 chr12 108719090 108719218 -35563271 + L1MC4a LINE L1 5790 5919 -1889 2365 84 3 3 chr12 108719301 108719600 -35562889 + AluSp SINE Alu 1 299 -14 25 0 0 0 chr12 108719649 108719674 -35562815 + AT_rich Low_complexity Low_complexity 1 25 0 1003 169 90 35 chr12 108719712 108719913 -35562576 + AluJb SINE Alu 86 297 -15 762 232 4 107 chr12 108720125 108720298 -35562191 + MIR SINE MIR 11 200 -62 216 0 0 0 chr12 108720298 108720322 -35562167 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1994 115 18 4 chr12 108720324 108720602 -35561887 - AluSx SINE Alu -30 282 1 2509 65 0 3 chr12 108720609 108720918 -35561571 - AluY SINE Alu -3 308 1 762 232 4 107 chr12 108720918 108720941 -35561548 + MIR SINE MIR 207 187 -75 2207 127 9 21 chr12 108720941 108721281 -35561208 + MER44D DNA MER2_type 1 606 -3 762 232 4 107 chr12 108721281 108721344 -35561145 + MIR SINE MIR 186 254 -8 364 256 12 12 chr12 108721753 108721839 -35560650 + MIR3 SINE MIR 112 197 -11 21 0 0 0 chr12 108722420 108722441 -35560048 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr12 108723081 108723106 -35559383 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 2763 148 10 4 chr12 108723482 108723916 -35558573 - MSTC LTR MaLR 0 428 1 2405 71 0 3 chr12 108723984 108724281 -35558208 - AluY SINE Alu 0 311 16 1236 217 101 7 chr12 108724293 108724579 -35557910 + MSTD LTR MaLR 84 396 0 268 318 84 19 chr12 108724946 108725053 -35557436 - L2 LINE L2 -956 2358 2245 837 152 7 14 chr12 108725095 108725233 -35557256 + FRAM SINE Alu 38 174 -2 555 221 55 16 chr12 108725317 108725444 -35557045 - FLAM_C SINE Alu 0 133 2 802 189 15 0 chr12 108725560 108725692 -35556797 + FLAM_C SINE Alu 2 135 -8 1736 143 28 17 chr12 108725693 108725980 -35556509 + AluJb SINE Alu 1 290 -22 3377 128 53 62 chr12 108725981 108726525 -35555964 + MER39B LTR ERV1 17 556 -97 758 189 0 8 chr12 108726525 108726657 -35555832 - FLAM_A SINE Alu -1 132 2 3377 128 53 62 chr12 108726657 108726755 -35555734 + MER39B LTR ERV1 556 653 0 31 68 0 0 chr12 108727007 108727066 -35555423 + AT_rich Low_complexity Low_complexity 1 59 0 836 111 0 0 chr12 108727066 108727174 -35555315 - AluJb SINE Alu -194 118 11 569 174 33 11 chr12 108727174 108727266 -35555223 - AluSc SINE Alu -100 209 116 2418 89 3 0 chr12 108727606 108727910 -35554579 - AluSp SINE Alu -7 306 2 2234 106 0 3 chr12 108727913 108728205 -35554284 - AluSg SINE Alu -19 291 1 821 182 0 0 chr12 108728206 108728338 -35554151 - AluJb SINE Alu -178 134 3 717 189 67 18 chr12 108728352 108728516 -35553973 + MSTD LTR MaLR 176 347 -49 1163 106 12 0 chr12 108728667 108728828 -35553661 - AluSq SINE Alu -150 163 1 2013 255 106 97 chr12 108728828 108729442 -35553047 - L1MEc LINE L1 -3988 2408 1801 835 145 15 15 chr12 108729442 108729573 -35552916 - FLAM_C SINE Alu 0 133 3 2013 255 106 97 chr12 108729573 108730100 -35552389 - L1MEc LINE L1 -4595 1801 1280 1788 153 0 82 chr12 108730100 108730440 -35552049 - AluSx SINE Alu 0 312 1 2013 255 106 97 chr12 108730440 108730887 -35551602 - L1MEc LINE L1 -5116 1280 839 1579 141 56 19 chr12 108730887 108731156 -35551333 - AluJo SINE Alu -33 279 1 2013 255 106 97 chr12 108731156 108731828 -35550661 - L1MEc LINE L1 -5557 839 121 2288 101 0 0 chr12 108731828 108732124 -35550365 - AluSg SINE Alu -14 296 1 2013 255 106 97 chr12 108732124 108732212 -35550277 - L1MEc LINE L1 -6275 121 35 1269 76 22 33 chr12 108732229 108732413 -35550076 - L1PA10 LINE L1 0 6168 5987 2243 24 0 0 chr12 108732937 108733188 -35549301 - L1PA3 LINE L1 -339 5816 5566 3151 9 3 3 chr12 108733188 108733525 -35548964 + L1PA3 LINE L1 5815 6155 0 23 33 0 0 chr12 108733525 108733555 -35548934 + AT_rich Low_complexity Low_complexity 1 30 0 29 47 0 0 chr12 108733621 108733664 -35548825 + AT_rich Low_complexity Low_complexity 1 43 0 326 277 17 25 chr12 108734104 108734223 -35548266 + L1M4 LINE L1 3084 3201 -2945 846 202 21 47 chr12 108734236 108734429 -35548060 + AluJo SINE Alu 120 307 -5 433 284 20 84 chr12 108734550 108734680 -35547809 + L1M4 LINE L1 3371 3508 -2638 2071 146 0 7 chr12 108734680 108734988 -35547501 + AluSx SINE Alu 5 310 -2 433 284 20 84 chr12 108734988 108735172 -35547317 + L1M4 LINE L1 3508 3678 -2468 192 363 71 44 chr12 108735253 108735435 -35547054 + L2 LINE L2 3074 3260 -12 923 239 93 0 chr12 108736240 108736445 -35546044 + MER58A DNA MER1_type 1 224 0 41 78 0 0 chr12 108736446 108736536 -35545953 + AT_rich Low_complexity Low_complexity 1 90 0 2414 88 3 0 chr12 108736817 108737125 -35545364 - AluSp SINE Alu -4 309 1 1823 169 0 10 chr12 108738168 108738464 -35544025 + AluJb SINE Alu 1 293 -19 327 278 52 10 chr12 108738526 108738623 -35543866 + MER5A DNA MER1_type 9 109 -80 2101 206 66 131 chr12 108738868 108739473 -35543016 - L1MDa LINE L1 -4153 2387 1744 287 264 14 0 chr12 108739473 108739545 -35542944 - U13 snRNA snRNA -26 78 6 2101 206 66 131 chr12 108739545 108739755 -35542734 - L1MDa LINE L1 -4796 1744 1522 1979 152 10 7 chr12 108739755 108740065 -35542424 - AluSx SINE Alu -1 311 1 2101 206 66 131 chr12 108740065 108740165 -35542324 - L1MDa LINE L1 -5018 1522 1417 291 54 0 0 chr12 108740165 108740202 -35542287 + (TG)n Simple_repeat Simple_repeat 2 38 0 2101 206 66 131 chr12 108740202 108740410 -35542079 - L1MDa LINE L1 -5123 1417 1269 549 221 8 33 chr12 108740955 108741077 -35541412 + FLAM_A SINE Alu 1 119 -14 306 237 13 40 chr12 108741112 108741188 -35541301 - Tigger5 DNA MER2_type 0 2323 2250 * 360 167 0 0 chr12 108741156 108741210 -35541279 - Tigger5 DNA MER2_type -2268 55 2 2125 104 17 30 chr12 108741242 108741541 -35540948 + AluSx SINE Alu 1 295 -17 621 253 124 20 chr12 108741712 108741914 -35540575 + MIR SINE MIR 34 256 -6 1944 139 0 7 chr12 108742041 108742379 -35540110 + AluSq SINE Alu 1 336 0 365 281 86 0 chr12 108742920 108743059 -35539430 + L1ME LINE L1 5512 5662 -459 2127 128 0 0 chr12 108743121 108743425 -35539064 + AluSx SINE Alu 1 304 -8 1913 163 0 0 chr12 108743550 108743838 -35538651 + AluSx SINE Alu 1 288 -24 868 126 0 8 chr12 108744824 108744943 -35537546 + FLAM_C SINE Alu 1 118 -25 306 286 162 22 chr12 108745052 108745271 -35537218 - MIR SINE MIR -6 256 3 351 0 0 0 chr12 108745772 108745811 -35536678 + (TG)n Simple_repeat Simple_repeat 2 40 0 2179 96 7 3 chr12 108746648 108746940 -35535549 + AluSx SINE Alu 1 293 -19 1849 168 9 25 chr12 108747697 108748013 -35534476 + AluJo SINE Alu 1 311 -1 189 254 104 0 chr12 108748017 108748084 -35534405 + L2 LINE L2 2691 2764 -550 307 323 10 10 chr12 108748244 108748340 -35534149 + L2 LINE L2 3199 3294 -19 2104 121 0 36 chr12 108748826 108749132 -35533357 - AluSx SINE Alu -17 295 1 410 226 15 186 chr12 108749389 108749593 -35532896 - MIR SINE MIR -74 188 20 188 375 42 21 chr12 108749802 108749898 -35532591 + L2 LINE L2 3154 3251 -21 618 125 11 0 chr12 108750036 108750124 -35532365 + AluJ/FLAM SINE Alu 2 90 -222 1864 147 10 20 chr12 108750631 108750923 -35531566 + AluJo SINE Alu 1 289 -23 236 82 0 144 chr12 108751512 108751576 -35530913 - L1MB3 LINE L1 0 6180 6125 2494 75 0 10 chr12 108752224 108752530 -35529959 - AluSc SINE Alu -4 305 3 429 301 159 22 chr12 108752956 108753182 -35529307 + MIR SINE MIR 6 262 0 23 54 0 0 chr12 108754026 108754063 -35528426 + AT_rich Low_complexity Low_complexity 1 37 0 2817 10 0 0 chr12 108754654 108754959 -35527530 + AluYa5 SINE Alu 1 305 -6 348 189 67 13 chr12 108754979 108755085 -35527404 - L1ME LINE L1 -346 5820 5716 510 216 86 9 chr12 108755855 108755971 -35526518 + FLAM_A SINE Alu 1 125 -17 1239 136 14 28 chr12 108756024 108756238 -35526251 + MER20 DNA MER1_type 5 215 -4 379 167 0 0 chr12 108756744 108756810 -35525679 - L1MA9 LINE L1 -17 6295 6230 1328 175 74 4 chr12 108757031 108757288 -35525201 - Tigger3(Golem) DNA MER2_type 0 3038 2764 2070 106 7 11 chr12 108757341 108757648 -35524841 - AluSx SINE Alu 0 306 1 1051 83 15 0 chr12 108757648 108757781 -35524708 - AluSq/x SINE Alu -178 135 1 2297 90 0 3 chr12 108758040 108758330 -35524159 - AluSc SINE Alu -20 289 1 873 142 0 0 chr12 108758639 108758766 -35523723 + AluJb SINE Alu 1 127 -185 584 278 76 32 chr12 108758785 108759032 -35523457 + MIR SINE MIR 2 249 -13 2022 156 17 0 chr12 108759141 108759443 -35523046 + AluSq SINE Alu 1 307 -6 205 264 14 69 chr12 108759606 108759639 -35522850 + L2 LINE L2 3155 3188 -84 1701 148 49 7 chr12 108759639 108759944 -35522545 - L1MA4 LINE L1 -4 6296 5979 205 264 14 69 chr12 108759944 108759982 -35522507 + L2 LINE L2 3188 3222 -50 1224 120 0 0 chr12 108760520 108760687 -35521802 - AluSg/x SINE Alu -13 299 133 1895 183 6 3 chr12 108760795 108761106 -35521383 + AluJb SINE Alu 1 312 0 225 258 81 0 chr12 108761143 108761205 -35521284 + L2 LINE L2 3246 3312 -1 2297 105 0 3 chr12 108761280 108761586 -35520903 + AluSx SINE Alu 1 305 -7 2070 113 0 13 chr12 108761949 108762250 -35520239 + AluSx SINE Alu 1 297 -15 2097 146 0 0 chr12 108762442 108762750 -35519739 + AluSx SINE Alu 3 310 -2 349 239 10 139 chr12 108762786 108762831 -35519658 + L3 LINE CR1 1229 1278 -299 1756 159 25 0 chr12 108762831 108763107 -35519382 + AluSx SINE Alu 6 288 -24 216 0 0 0 chr12 108763114 108763138 -35519351 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 349 239 10 139 chr12 108763138 108763274 -35519215 + L3 LINE CR1 1284 1391 -186 2130 131 3 0 chr12 108763274 108763572 -35518917 + AluSx SINE Alu 1 299 -13 349 239 10 139 chr12 108763572 108763590 -35518899 + L3 LINE CR1 1391 1410 -167 196 148 33 0 chr12 108764484 108764545 -35517944 + (TA)n Simple_repeat Simple_repeat 2 64 0 186 43 0 0 chr12 108764545 108764568 -35517921 + (CA)n Simple_repeat Simple_repeat 2 24 0 546 204 0 65 chr12 108764598 108764706 -35517783 - AluJ/FLAM SINE Alu -210 102 2 1988 145 3 0 chr12 108764963 108765252 -35517237 + AluJb SINE Alu 1 290 -22 208 167 0 0 chr12 108765591 108765627 -35516862 - MIR SINE MIR -9 253 218 1873 139 10 30 chr12 108766916 108767219 -35515270 - AluJb SINE Alu -15 297 1 21 0 0 0 chr12 108767289 108767310 -35515179 + AT_rich Low_complexity Low_complexity 1 21 0 480 305 58 34 chr12 108767373 108767753 -35514736 + L1ME3A LINE L1 4350 4738 -1408 313 321 211 8 chr12 108767754 108767991 -35514498 + L1ME3A LINE L1 5097 5381 -765 546 263 193 25 chr12 108768200 108768760 -35513729 + L1ME3A LINE L1 5392 6027 -143 18855 26 4 1 chr12 108768958 108772909 -35509580 + L1PA3 LINE L1 2190 6155 0 503 250 149 16 chr12 108773068 108773238 -35509251 - MIR SINE MIR -29 233 34 2314 82 7 20 chr12 108773238 108773543 -35508946 + AluSx SINE Alu 1 301 -11 503 250 149 16 chr12 108773543 108773560 -35508929 - MIR SINE MIR -228 34 21 23 0 0 0 chr12 108773767 108773790 -35508699 + AT_rich Low_complexity Low_complexity 1 23 0 508 189 54 27 chr12 108773846 108773957 -35508532 - L2 LINE L2 -5 3308 3195 187 230 162 0 chr12 108774059 108774133 -35508356 - MIR3 SINE MIR 0 208 123 199 307 40 40 chr12 108774637 108774712 -35507777 - L2 LINE L2 -9 3263 3189 299 342 55 45 chr12 108775539 108775738 -35506751 + MIR SINE MIR 5 205 -57 191 167 33 83 chr12 108776496 108776556 -35505933 + MIR3 SINE MIR 143 199 -9 697 243 127 57 chr12 108777369 108777928 -35504561 - L1ME4a LINE L1 -11 6110 5513 627 188 312 21 chr12 108778016 108778202 -35504287 + AluJo SINE Alu 43 282 -30 2211 105 0 16 chr12 108778202 108778507 -35503982 - AluSg SINE Alu -10 300 1 983 113 0 0 chr12 108778821 108778985 -35503504 + FLAM_C SINE Alu 1 164 0 267 93 0 0 chr12 108779414 108779457 -35503032 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2020 128 0 3 chr12 108779460 108779742 -35502747 - AluSx SINE Alu -26 286 6 278 268 96 96 chr12 108779765 108779944 -35502545 - L1MC4a LINE L1 -303 5818 5641 839 116 0 95 chr12 108779944 108780091 -35502398 - FLAM_C SINE Alu 0 133 1 278 268 96 96 chr12 108780091 108780316 -35502173 - L1MC4a LINE L1 -480 5641 5418 2298 110 0 0 chr12 108780316 108780616 -35501873 - AluSx SINE Alu -8 304 5 278 268 96 96 chr12 108780616 108780630 -35501859 - L1MC4a LINE L1 -703 5418 5702 2076 128 7 0 chr12 108780630 108780932 -35501557 - AluSx SINE Alu 0 304 1 278 268 96 96 chr12 108780932 108780988 -35501501 - L1MC4a LINE L1 -418 5703 5649 716 256 112 28 chr12 108781087 108781408 -35501081 - L1ME3A LINE L1 -331 5839 5492 2238 125 0 3 chr12 108781409 108781720 -35500769 - AluSq SINE Alu -3 310 1 34 24 0 0 chr12 108781728 108781769 -35500720 + AT_rich Low_complexity Low_complexity 1 41 0 475 295 166 11 chr12 108781850 108782128 -35500361 + LTR33 LTR ERVL 17 337 -184 1239 78 0 0 chr12 108782357 108782510 -35499979 + AluSc SINE Alu 154 306 -3 638 255 64 30 chr12 108782575 108782810 -35499679 - MIR SINE MIR -10 252 10 1794 144 0 44 chr12 108782927 108783225 -35499264 + AluSx SINE Alu 12 296 -16 827 172 100 17 chr12 108783281 108783461 -35499028 + L1MC4 LINE L1 7376 7570 -472 745 220 0 8 chr12 108783465 108783597 -35498892 + FLAM_A SINE Alu 1 131 -11 787 125 9 0 chr12 108783601 108783713 -35498776 + AluJb SINE Alu 22 134 -178 606 249 39 52 chr12 108783738 108783967 -35498522 + L1MC4 LINE L1 7576 7801 -241 734 104 47 0 chr12 108784014 108784120 -35498369 + HY1 scRNA scRNA 1 111 -1 227 132 0 38 chr12 108784120 108784147 -35498342 + (TAAA)n Simple_repeat Simple_repeat 2 28 -24 2065 136 0 0 chr12 108784147 108784433 -35498056 + AluJb SINE Alu 2 287 -25 227 132 0 38 chr12 108784433 108784458 -35498031 + (TAAA)n Simple_repeat Simple_repeat 28 52 0 2021 110 14 0 chr12 108784673 108785004 -35497485 - AluSq SINE Alu 0 335 1 298 286 114 0 chr12 108785005 108785180 -35497309 - L1M4 LINE L1 -1575 4571 4377 3872 99 37 21 chr12 108785196 108785761 -35496728 - L1PB3 LINE L1 -4 6150 5577 2390 90 25 75 chr12 108785761 108786161 -35496328 + L1MC1 LINE L1 5954 6333 0 3475 172 10 23 chr12 108786164 108786295 -35496194 - L1PB3 LINE L1 -563 5591 5460 1719 154 3 53 chr12 108786295 108786631 -35495858 + AluJb SINE Alu 1 321 0 3475 172 10 23 chr12 108786631 108787517 -35494972 - L1PB3 LINE L1 -694 5460 4585 1369 142 0 19 chr12 108787520 108787557 -35494932 + AluSq SINE Alu 100 136 -177 2214 109 3 16 chr12 108787557 108787860 -35494629 + AluSg SINE Alu 1 299 -11 1369 142 0 19 chr12 108787860 108788034 -35494455 + AluSq SINE Alu 136 307 -6 787 211 0 18 chr12 108788036 108788207 -35494282 - L1PB3 LINE L1 -1554 4592 4425 248 117 50 17 chr12 108788209 108788269 -35494220 - L1PB3 LINE L1 -1698 4448 4387 605 82 0 12 chr12 108788300 108788385 -35494104 - MER51A LTR ERV1 -81 553 470 416 111 0 0 chr12 108788403 108788457 -35494032 - FLAM SINE Alu -18 125 72 251 145 0 48 chr12 108788459 108788521 -35493968 - L1PB3 LINE L1 -1702 4444 4386 1015 207 12 72 chr12 108788527 108788549 -35493940 - L1PB3 LINE L1 -1722 4424 4402 853 180 0 0 chr12 108788549 108788677 -35493812 - FLAM_C SINE Alu -5 128 1 1015 207 12 72 chr12 108788677 108788783 -35493706 - L1PB3 LINE L1 -1744 4402 4291 2253 119 0 22 chr12 108788783 108789101 -35493388 - AluSx SINE Alu 0 312 2 1015 207 12 72 chr12 108789101 108789290 -35493199 - L1PB3 LINE L1 -1855 4291 4125 1001 144 26 0 chr12 108789370 108789523 -35492966 - AluSp SINE Alu -11 302 146 1148 151 0 0 chr12 108789623 108789789 -35492700 - AluSx SINE Alu -142 170 5 1012 176 0 0 chr12 108789795 108789954 -35492535 - FRAM SINE Alu -18 158 1 353 292 141 36 chr12 108789991 108790183 -35492306 + MIR SINE MIR 8 219 -43 2157 117 0 3 chr12 108790286 108790586 -35491903 - AluSq SINE Alu -14 299 1 1862 156 0 0 chr12 108790598 108790906 -35491583 - AluSx SINE Alu 0 308 1 2021 143 0 7 chr12 108790926 108791220 -35491269 - AluSx SINE Alu -16 296 5 186 43 0 0 chr12 108791238 108791261 -35491228 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2112 76 10 31 chr12 108791264 108791553 -35490936 - AluSp SINE Alu -30 283 1 3375 159 26 78 chr12 108791553 108792295 -35490194 - MER6 DNA MER2_type -70 795 -10 372 195 24 0 chr12 108792295 108792377 -35490112 - L1M4 LINE L1 -931 5215 5132 933 154 21 0 chr12 108792380 108792523 -35489966 - AluSg/x SINE Alu -8 302 157 809 183 20 0 chr12 108792560 108792713 -35489776 - L1M4 LINE L1 -1888 4258 4103 1437 133 28 0 chr12 108792832 108793050 -35489439 - L1M2 LINE L1 -584 5728 5505 2500 81 0 7 chr12 108793203 108793512 -35488977 - AluSc SINE Alu -2 307 1 2262 125 0 0 chr12 108793524 108793837 -35488652 - AluSq SINE Alu 0 313 1 1030 109 0 0 chr12 108793973 108794110 -35488379 - AluSg/x SINE Alu -2 310 174 438 188 0 0 chr12 108794110 108794179 -35488310 - AluS SINE Alu -243 70 2 1517 143 81 19 chr12 108794183 108794441 -35488048 - AluJb SINE Alu -23 289 16 729 309 98 31 chr12 108794446 108794802 -35487687 + L2 LINE L2 2933 3312 -1 621 114 0 0 chr12 108795148 108795227 -35487262 + FLAM_A SINE Alu 36 114 -28 2187 106 3 0 chr12 108795351 108795672 -35486817 - AluSx SINE Alu 0 322 1 1764 135 127 0 chr12 108795743 108796010 -35486479 - AluJo SINE Alu -1 301 1 518 141 0 0 chr12 108796142 108796220 -35486269 + Alu SINE Alu 235 312 0 2088 135 3 0 chr12 108796475 108796771 -35485718 - AluSx SINE Alu -15 297 1 482 0 17 0 chr12 108796915 108796973 -35485516 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 441 289 77 10 chr12 108796997 108797191 -35485298 - L1ME3A LINE L1 -225 5945 5739 267 309 126 22 chr12 108797215 108797438 -35485051 - L1ME LINE L1 -395 5775 5530 1654 88 18 0 chr12 108797941 108798158 -35484331 + AluJb SINE Alu 82 302 -10 2259 95 3 0 chr12 108798161 108798455 -35484034 + AluSc SINE Alu 1 295 -14 683 130 17 26 chr12 108798462 108798577 -35483912 + U5 snRNA snRNA 1 114 -2 349 145 0 16 chr12 108798584 108798646 -35483843 - Alu SINE Alu 0 302 242 1425 153 14 0 chr12 108798755 108798971 -35483518 - AluSq SINE Alu -94 219 1 1090 191 43 9 chr12 108799235 108799445 -35483044 - MER20 DNA MER1_type -1 218 2 21 71 0 0 chr12 108800156 108800198 -35482291 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr12 108801316 108801348 -35481141 + AT_rich Low_complexity Low_complexity 1 32 0 243 269 277 35 chr12 108802582 108802842 -35479647 - L2 LINE L2 -1 3312 2990 441 216 59 0 chr12 108802845 108802947 -35479542 + FLAM_A SINE Alu 3 110 -32 226 313 44 55 chr12 108803016 108803198 -35479291 - L2 LINE L2 -325 2988 2809 300 300 14 64 chr12 108803255 108803395 -35479094 - MIR SINE MIR -114 148 16 1600 96 14 0 chr12 108803539 108803747 -35478742 - AluSg/x SINE Alu -16 296 86 1188 78 0 0 chr12 108803765 108803906 -35478583 - AluSq/x SINE Alu -171 141 1 2155 110 13 13 chr12 108803916 108804226 -35478263 - AluSx SINE Alu 0 312 3 23 33 0 0 chr12 108804228 108804258 -35478231 + AT_rich Low_complexity Low_complexity 1 30 0 491 271 0 0 chr12 108804259 108804366 -35478123 - 5S rRNA rRNA -13 108 2 2087 128 0 13 chr12 108804373 108804679 -35477810 - AluSx SINE Alu -10 302 1 2213 132 0 0 chr12 108804830 108805134 -35477355 - AluJo SINE Alu -8 304 1 808 154 0 8 chr12 108805837 108805954 -35476535 + FLAM_C SINE Alu 1 116 -17 2073 82 68 14 chr12 108805983 108806276 -35476213 + AluSp SINE Alu 3 311 -2 1828 235 90 37 chr12 108806423 108807192 -35475297 - L1MDa LINE L1 -3384 3156 2364 808 133 37 37 chr12 108807211 108807346 -35475143 - AluJo SINE Alu -176 136 2 617 217 128 11 chr12 108807373 108807553 -35474936 - L1MDa LINE L1 -4317 2404 2204 475 292 70 11 chr12 108807603 108807788 -35474701 + MIR SINE MIR 47 242 -20 2107 108 27 3 chr12 108807788 108808083 -35474406 + AluSx SINE Alu 1 302 -10 2353 100 0 3 chr12 108808100 108808463 -35474026 - AluY SINE Alu 0 362 1 504 212 106 30 chr12 108808475 108808607 -35473882 - MIR SINE MIR -112 150 9 2303 81 0 0 chr12 108808692 108809021 -35473468 - AluSx SINE Alu 0 329 1 205 217 15 29 chr12 108809126 108809197 -35473292 - MIR SINE MIR -126 82 14 401 258 62 0 chr12 108809588 108809685 -35472804 - MIR SINE MIR -98 164 62 2288 100 7 7 chr12 108809685 108809994 -35472495 + AluSg1 SINE Alu 1 309 0 1085 176 45 0 chr12 108810102 108810301 -35472188 - MER3 DNA MER1_type 0 209 2 820 239 17 6 chr12 108810366 108810546 -35471943 - MIR SINE MIR -71 191 10 734 169 65 49 chr12 108810547 108810731 -35471758 + MER5A DNA MER1_type 1 187 -2 180 291 17 51 chr12 108810925 108811042 -35471447 - MIR SINE MIR -138 124 12 2119 119 0 22 chr12 108811290 108811601 -35470888 - AluSq SINE Alu -9 304 1 244 214 0 0 chr12 108811631 108811673 -35470816 - 5S rRNA rRNA -79 42 1 789 292 69 71 chr12 108811711 108812353 -35470136 - L2 LINE L2 0 3313 2679 1943 140 4 0 chr12 108812353 108812631 -35469858 + AluJo SINE Alu 2 280 -32 789 292 69 71 chr12 108812631 108812719 -35469770 - L2 LINE L2 -634 2679 2592 1020 162 7 0 chr12 108812790 108812944 -35469545 + FRAM SINE Alu 1 154 -22 230 264 208 0 chr12 108813012 108813084 -35469405 + L2 LINE L2 3186 3272 0 522 224 37 151 chr12 108813166 108813411 -35469078 - MIR SINE MIR -43 219 3 835 160 0 15 chr12 108813444 108813575 -35468914 + FLAM_A SINE Alu 1 129 -4 2219 127 0 0 chr12 108814467 108814766 -35467723 - AluSx SINE Alu -13 299 1 472 169 0 0 chr12 108815588 108815659 -35466830 + MLT1C LTR MaLR 1 71 -396 1130 149 6 0 chr12 108815662 108815837 -35466652 - AluSq SINE Alu -4 309 134 2256 102 3 19 chr12 108815837 108816150 -35466339 - AluSq SINE Alu -5 308 1 1624 194 78 34 chr12 108816150 108816537 -35465952 + MLT1C LTR MaLR 64 467 0 2285 83 3 20 chr12 108816862 108817162 -35465327 + AluSc SINE Alu 1 295 -14 678 252 188 30 chr12 108817517 108817815 -35464674 + L2 LINE L2 2969 3313 0 716 162 0 8 chr12 108817850 108817967 -35464522 + FLAM_C SINE Alu 2 117 -26 1983 170 0 0 chr12 108818130 108818442 -35464047 - AluSx SINE Alu 0 312 1 3562 157 8 54 chr12 108818514 108818993 -35463496 + MER6A DNA MER2_type 1 446 -419 2333 98 3 0 chr12 108818993 108819123 -35463366 + AluSp SINE Alu 1 129 -184 207 0 0 0 chr12 108819123 108819146 -35463343 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2333 98 3 0 chr12 108819146 108819320 -35463169 + AluSp SINE Alu 129 306 -7 3562 157 8 54 chr12 108819320 108819472 -35463017 + MER6A DNA MER2_type 446 603 -2 451 266 63 0 chr12 108819588 108819731 -35462758 + MIR SINE MIR 2 153 -109 377 208 42 0 chr12 108819906 108820002 -35462487 + MIR SINE MIR 153 252 -10 1919 136 179 16 chr12 108820338 108820706 -35461783 + MSTA LTR MaLR 1 428 0 3635 127 12 7 chr12 108820924 108821508 -35460981 - L1MA4A LINE L1 -233 6070 5484 2384 102 0 0 chr12 108821743 108822046 -35460443 + AluSg SINE Alu 1 303 -7 1452 221 28 44 chr12 108822069 108822431 -35460058 + MLT1A2 LTR MaLR 2 357 -17 1295 231 161 6 chr12 108822432 108822464 -35460025 - MLT2B1 LTR ERVL 0 520 494 351 0 0 0 chr12 108822464 108822503 -35459986 + (TG)n Simple_repeat Simple_repeat 2 40 0 1295 231 161 6 chr12 108822503 108822799 -35459690 - MLT2B1 LTR ERVL -26 494 141 189 107 0 0 chr12 108822827 108822855 -35459634 + (TG)n Simple_repeat Simple_repeat 2 29 0 699 140 111 105 chr12 108822855 108823026 -35459463 + MER21A LTR ERV1 21 192 -739 2117 136 3 7 chr12 108823026 108823336 -35459153 - AluSx SINE Alu -1 311 3 274 233 17 0 chr12 108823373 108823433 -35459056 + AluS SINE Alu 2 62 -241 1654 180 3 14 chr12 108823584 108823878 -35458611 + AluJo SINE Alu 2 292 -20 3181 184 60 55 chr12 108823904 108824636 -35457853 + MER21A LTR ERV1 179 914 -17 713 200 7 33 chr12 108824652 108824802 -35457687 - MLT2B1 LTR ERVL -373 147 2 359 85 0 0 chr12 108824803 108824850 -35457639 - ERVL-B1 LTR ERVL -7 5757 5711 46 45 0 0 chr12 108824857 108824924 -35457565 + AT_rich Low_complexity Low_complexity 1 67 0 2254 106 0 3 chr12 108824986 108825288 -35457201 - AluSx SINE Alu -11 301 1 993 127 0 0 chr12 108825847 108825981 -35456508 + AluSq/x SINE Alu 1 134 -178 2271 80 7 17 chr12 108825982 108826283 -35456206 + AluSc SINE Alu 1 298 -11 6051 137 0 0 chr12 108826345 108827401 -35455088 - L1PA16 LINE L1 -2 6164 5107 6734 189 27 36 chr12 108827403 108827749 -35454740 + L1 LINE L1 3601 3948 -2198 1945 165 0 0 chr12 108827749 108828046 -35454443 + AluJb SINE Alu 1 297 -15 6734 189 27 36 chr12 108828046 108828452 -35454037 + L1 LINE L1 3948 4356 -1790 1877 180 0 7 chr12 108828452 108828757 -35453732 - AluJo SINE Alu -9 303 1 6734 189 27 36 chr12 108828757 108829420 -35453069 + L1 LINE L1 4356 5006 -1140 1988 171 0 0 chr12 108829420 108829725 -35452764 + AluSx SINE Alu 1 305 -7 6734 189 27 36 chr12 108829725 108829814 -35452675 + L1 LINE L1 5006 5094 -1052 19036 27 0 0 chr12 108830222 108833106 -35449383 + L1PA2 LINE L1 3272 6155 0 2209 113 3 0 chr12 108833341 108833642 -35448847 + AluSg SINE Alu 1 302 -8 28 0 0 0 chr12 108834101 108834129 -35448360 + AT_rich Low_complexity Low_complexity 1 28 0 2433 136 8 6 chr12 108834144 108834498 -35447991 - THE1A LTR MaLR 0 355 1 12125 94 8 13 chr12 108834498 108836085 -35446404 - THE1A-int LTR MaLR 0 1580 1 2521 111 8 8 chr12 108836085 108836436 -35446053 - THE1A LTR MaLR 0 355 5 2012 120 7 14 chr12 108836612 108836896 -35445593 + AluSx SINE Alu 13 294 -18 22 0 0 0 chr12 108836935 108836957 -35445532 + AT_rich Low_complexity Low_complexity 1 22 0 2187 122 10 0 chr12 108837195 108837491 -35444998 + AluSx SINE Alu 1 299 -13 2373 93 3 6 chr12 108837547 108837860 -35444629 + AluSp SINE Alu 1 312 -1 1312 292 130 41 chr12 108837973 108838883 -35443606 + HAL1 LINE L1 269 1259 -1248 504 130 0 0 chr12 108838883 108838960 -35443529 + L1PA13 LINE L1 6083 6159 -4 307 187 37 0 chr12 108838961 108839023 -35443466 - L1MC/D LINE L1 -537 5584 5525 258 293 105 68 chr12 108839200 108839333 -35443156 + MIR SINE MIR 26 163 -99 1263 268 64 27 chr12 108839480 108839863 -35442626 - LTR16C LTR ERVL -4 475 90 534 229 25 118 chr12 108840287 108840532 -35441957 + LTR67 LTR ERVL 3 224 -333 639 321 69 48 chr12 108840535 108840912 -35441577 + LTR67 LTR ERVL 159 543 -14 195 129 0 0 chr12 108841284 108841315 -35441174 + (CTTA)n Simple_repeat Simple_repeat 1 31 0 967 154 0 0 chr12 108841341 108841484 -35441005 + AluSq/x SINE Alu 1 143 -170 286 132 0 0 chr12 108841484 108841551 -35440938 + Alu SINE Alu 245 311 0 2370 113 19 16 chr12 108841551 108841688 -35440801 - L1PA16 LINE L1 -25 6141 6005 358 283 28 81 chr12 108841688 108841971 -35440518 - L1MB4 LINE L1 -181 5999 5732 659 262 105 8 chr12 108842222 108842470 -35440019 + MLT1L LTR MaLR 5 276 -339 271 260 48 29 chr12 108842637 108842741 -35439748 + MLT1L LTR MaLR 503 608 -7 1654 190 3 11 chr12 108842922 108843206 -35439283 + AluJo SINE Alu 1 282 -30 342 0 0 0 chr12 108843210 108843248 -35439241 + (CA)n Simple_repeat Simple_repeat 2 39 0 1520 165 112 4 chr12 108843679 108843946 -35438543 - AluSg1 SINE Alu -13 296 1 2222 93 3 13 chr12 108844577 108844878 -35437611 + AluSx SINE Alu 15 312 0 460 225 70 7 chr12 108844880 108845022 -35437467 - MER21B LTR ERV1 -615 248 98 1478 195 13 20 chr12 108845078 108845380 -35437109 + AluJb SINE Alu 5 304 -8 407 208 0 14 chr12 108845380 108845452 -35437037 - MER21B LTR ERV1 -770 93 23 1807 164 4 0 chr12 108845467 108845783 -35436706 + AluSx SINE Alu 1 317 0 2024 124 0 3 chr12 108845845 108846159 -35436330 + AluY SINE Alu 1 313 0 336 148 0 0 chr12 108846161 108846215 -35436274 + L1 LINE L1 3511 3564 -2582 460 235 105 19 chr12 108846277 108846439 -35436050 + L1ME3 LINE L1 5987 6162 0 1990 156 3 0 chr12 108846597 108846899 -35435590 + AluJb SINE Alu 1 303 -9 1951 162 10 0 chr12 108846899 108847195 -35435294 + AluSx SINE Alu 1 300 -12 361 200 15 6 chr12 108847395 108847477 -35435012 + AluSg/x SINE Alu 190 252 -48 2599 55 0 0 chr12 108847491 108847800 -35434689 - AluY SINE Alu 0 311 3 542 105 0 0 chr12 108847824 108847900 -35434589 - FLAM_C SINE Alu -3 140 65 2087 148 0 0 chr12 108848326 108848637 -35433852 + AluJb SINE Alu 1 311 -1 1398 16 6 22 chr12 108848647 108848830 -35433659 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2126 135 3 0 chr12 108849279 108849583 -35432906 - AluSx SINE Alu -3 309 5 905 136 0 0 chr12 108850176 108850301 -35432188 + FLAM_C SINE Alu 1 125 -8 1256 140 48 118 chr12 108850670 108850984 -35431505 - AluJo SINE Alu -20 292 1 2263 102 0 20 chr12 108850986 108851291 -35431198 - AluSq SINE Alu -14 299 1 978 120 0 0 chr12 108851295 108851428 -35431061 - AluJb SINE Alu -179 133 1 727 128 145 8 chr12 108852147 108852264 -35430225 - FLAM_C SINE Alu 0 133 1 1688 90 22 34 chr12 108852264 108852532 -35429957 - Tigger3b DNA MER2_type -639 592 328 321 106 94 94 chr12 108852551 108852636 -35429853 - Tigger3(Golem) DNA MER2_type -874 2155 274 280 83 0 0 chr12 108852634 108852670 -35429819 - Tigger3(Golem) DNA MER2_type -2927 102 67 * 1732 141 87 4 chr12 108852670 108852947 -35429542 - AluSq SINE Alu -13 300 1 320 85 0 21 chr12 108852964 108853011 -35429478 - MER57A LTR ERV1 -63 340 295 276 127 0 0 chr12 108853024 108853079 -35429410 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2082 136 0 7 chr12 108853312 108853622 -35428867 + AluSx SINE Alu 3 310 -2 312 128 0 21 chr12 108853655 108853702 -35428787 + MER57A LTR ERV1 295 340 -63 490 159 0 0 chr12 108853748 108853817 -35428672 + AluS SINE Alu 2 70 -243 966 61 0 0 chr12 108853817 108853932 -35428557 + AluSg/x SINE Alu 174 288 -24 216 0 0 0 chr12 108853937 108853961 -35428528 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 2139 72 9 63 chr12 108854840 108855159 -35427330 - AluSx SINE Alu -10 302 1 39 0 0 0 chr12 108856155 108856194 -35426295 + AT_rich Low_complexity Low_complexity 1 39 0 1146 159 93 0 chr12 108856213 108856427 -35426062 - L1PB4 LINE L1 -1 6155 5922 22 0 0 0 chr12 108856430 108856452 -35426037 + AT_rich Low_complexity Low_complexity 1 22 0 207 100 0 0 chr12 108856490 108856520 -35425969 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 2620 39 0 10 chr12 108856600 108856912 -35425577 - AluY SINE Alu -2 309 1 482 162 0 0 chr12 108857285 108857359 -35425130 - AluJb SINE Alu -9 303 230 819 132 21 28 chr12 108857364 108857508 -35424981 - AluJb SINE Alu -169 143 1 273 133 0 0 chr12 108857592 108857637 -35424852 - LOR1a LTR ERV1 -214 283 239 1183 153 3 141 chr12 108857654 108857967 -35424522 - L1 LINE L1 -837 5309 5040 227 56 56 0 chr12 108857972 108858008 -35424481 + CT-rich Low_complexity Low_complexity 3 40 0 4082 150 21 87 chr12 108858012 108858499 -35423990 + L1MA7 LINE L1 5405 5806 -485 2178 142 0 0 chr12 108858499 108858801 -35423688 + AluSx SINE Alu 1 302 -10 4082 150 21 87 chr12 108858801 108859226 -35423263 + L1MA7 LINE L1 5806 6257 -34 814 181 0 0 chr12 108860121 108860248 -35422241 + FLAM_C SINE Alu 1 127 -16 1031 111 47 12 chr12 108861033 108861204 -35421285 - L1MA10 LINE L1 -1 6333 6157 2229 116 10 0 chr12 108861257 108861559 -35420930 - AluSx SINE Alu -7 305 1 4131 150 25 54 chr12 108861563 108861638 -35420851 - L1MB1 LINE L1 -34 6155 6079 2342 102 96 0 chr12 108861638 108861970 -35420519 - THE1B LTR MaLR 0 364 1 4131 150 25 54 chr12 108861970 108862687 -35419802 - L1MB1 LINE L1 -110 6079 5386 21 36 0 0 chr12 108863070 108863098 -35419391 + AT_rich Low_complexity Low_complexity 1 28 0 315 290 101 22 chr12 108863365 108863477 -35419012 - MIR SINE MIR 0 262 136 2521 54 0 0 chr12 108863477 108863764 -35418725 + AluY SINE Alu 1 290 -21 195 42 0 0 chr12 108863764 108863788 -35418701 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 315 290 101 22 chr12 108863796 108863821 -35418668 - MIR SINE MIR -126 136 114 184 326 112 31 chr12 108864006 108864104 -35418385 + L2 LINE L2 3155 3260 -12 2282 110 0 16 chr12 108864124 108864441 -35418048 + AluSx SINE Alu 1 312 0 598 239 0 15 chr12 108864755 108864885 -35417604 - L2 LINE L2 -2 3311 3184 5519 151 12 8 chr12 108865750 108866682 -35415807 + L1MA9 LINE L1 5372 6307 -5 1332 151 25 76 chr12 108867124 108867233 -35415256 - MER33 DNA MER1_type -2261 324 211 1807 164 0 55 chr12 108867233 108867563 -35414926 + AluJo SINE Alu 1 312 0 1332 151 25 76 chr12 108867563 108867770 -35414719 - MER33 DNA MER1_type -2374 211 24 743 231 87 12 chr12 108867785 108867958 -35414531 + MIR SINE MIR 77 262 0 1769 144 22 0 chr12 108868404 108868675 -35413814 + AluSx SINE Alu 36 312 0 280 306 154 40 chr12 108868721 108869153 -35413336 - L2 LINE L2 -108 3205 2731 2184 124 3 0 chr12 108869574 108869873 -35412616 + AluSx SINE Alu 1 300 -12 678 328 101 17 chr12 108869890 108870247 -35412242 - L2 LINE L2 -638 2676 2290 329 268 80 9 chr12 108870637 108870749 -35411740 + L2 LINE L2 3193 3312 -1 672 253 33 42 chr12 108870805 108871046 -35411443 + HAL1 LINE L1 4 242 -2265 202 308 19 0 chr12 108871154 108871206 -35411283 + MIR SINE MIR 206 258 -4 1514 194 22 29 chr12 108871263 108871577 -35410912 - AluJo SINE Alu 0 312 1 1274 226 141 46 chr12 108871624 108872075 -35410414 - MLT1H LTR MaLR 0 549 12 1043 246 45 108 chr12 108872088 108872504 -35409985 - HAL1 LINE L1 -908 1599 1158 2036 151 3 3 chr12 108872504 108872809 -35409680 - AluSx SINE Alu -5 307 3 1043 246 45 108 chr12 108872809 108872821 -35409668 - HAL1 LINE L1 -1349 1158 1147 1838 171 13 3 chr12 108872821 108873119 -35409370 - AluJo SINE Alu -3 309 9 2074 132 0 3 chr12 108873126 108873413 -35409076 - AluSx SINE Alu -17 295 10 1043 246 45 108 chr12 108873413 108873511 -35408978 - HAL1 LINE L1 -1366 1141 1098 4176 147 12 70 chr12 108873645 108873843 -35408646 - L1PB4 LINE L1 0 6156 5948 2037 144 3 0 chr12 108873843 108874148 -35408341 - AluSx SINE Alu -6 306 1 4176 147 12 70 chr12 108874148 108874460 -35408029 - L1PB4 LINE L1 -208 5948 5620 412 70 0 200 chr12 108874460 108874560 -35407929 - MADE1 DNA Mariner 0 80 1 4176 147 12 70 chr12 108874560 108874933 -35407556 - L1PB4 LINE L1 -536 5620 5227 2304 114 0 3 chr12 108874933 108875239 -35407250 - AluSq SINE Alu -8 305 1 802 148 0 22 chr12 108875242 108875377 -35407112 - AluJo/FLAM SINE Alu -170 132 1 2360 96 0 0 chr12 108875384 108875687 -35406802 - AluY SINE Alu -8 303 1 4176 147 12 70 chr12 108875687 108875869 -35406620 - L1PB4 LINE L1 -937 5219 5157 2091 154 0 0 chr12 108876000 108876312 -35406177 + AluSx SINE Alu 1 312 0 391 286 18 9 chr12 108876493 108876605 -35405884 - L2 LINE L2 0 3313 3201 5358 130 7 7 chr12 108876864 108878294 -35404195 + L1MA3 LINE L1 4687 6116 -189 968 135 0 0 chr12 108878949 108879082 -35403407 + AluJb SINE Alu 1 133 -179 1701 190 10 10 chr12 108879085 108879396 -35403093 + AluJb SINE Alu 1 311 -1 676 255 12 0 chr12 108879542 108879703 -35402786 - MIR SINE MIR 0 262 100 2335 128 31 14 chr12 108879902 108880260 -35402229 + THE1B LTR MaLR 1 364 0 11836 96 4 0 chr12 108880260 108881834 -35400655 + THE1B-int LTR MaLR 1 1580 0 1205 109 77 0 chr12 108881835 108882018 -35400471 + THE1B LTR MaLR 2 198 -166 1372 129 10 0 chr12 108882018 108882211 -35400278 - AluSx SINE Alu -117 195 1 1052 110 21 37 chr12 108882214 108882348 -35400141 + L1MA3 LINE L1 6118 6250 -55 2367 87 0 22 chr12 108882348 108882659 -35399830 + AluSc SINE Alu 1 304 -5 1052 110 21 37 chr12 108882659 108882715 -35399774 + L1MA3 LINE L1 6250 6305 0 929 92 8 0 chr12 108882815 108882945 -35399544 + THE1B LTR MaLR 234 364 0 314 79 32 0 chr12 108883290 108883353 -35399136 - L1MA3 LINE L1 -1 6304 6240 23 0 0 0 chr12 108883537 108883560 -35398929 + AT_rich Low_complexity Low_complexity 1 23 0 426 322 22 115 chr12 108884057 108884128 -35398361 - L2 LINE L2 -6 3266 3190 1004 179 29 0 chr12 108884128 108884301 -35398188 - MER45A DNA AcHobo 0 178 1 426 322 22 115 chr12 108884301 108884393 -35398096 - L2 LINE L2 -82 3190 3091 2212 107 0 0 chr12 108884393 108884691 -35397798 + AluY SINE Alu 1 298 -13 426 322 22 115 chr12 108884691 108884849 -35397640 - L2 LINE L2 -181 3091 2974 2042 161 0 0 chr12 108885104 108885414 -35397075 - AluSx SINE Alu -2 310 1 2073 138 3 0 chr12 108885965 108886254 -35396235 + AluSx SINE Alu 1 290 -22 270 250 14 14 chr12 108886339 108886411 -35396078 + L2 LINE L2 3154 3225 -47 1948 154 3 13 chr12 108886916 108887215 -35395274 - AluJo SINE Alu -16 296 1 245 340 21 0 chr12 108887413 108887510 -35394979 + L2 LINE L2 3199 3297 -16 469 286 119 16 chr12 108887514 108887699 -35394790 - LTR16C LTR ERVL -79 412 209 229 200 0 0 chr12 108887880 108887925 -35394564 + (TG)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr12 108888022 108888049 -35394440 + AT_rich Low_complexity Low_complexity 1 27 0 2013 142 0 3 chr12 108888213 108888502 -35393987 + AluSx SINE Alu 1 288 -24 346 371 42 14 chr12 108888541 108888829 -35393660 + L1MC/D LINE L1 5463 5758 -2050 888 224 0 0 chr12 108888972 108889133 -35393356 - FRAM SINE Alu -5 161 1 7168 52 1 2 chr12 108889439 108890555 -35391934 + L1PA5 LINE L1 5036 6151 -3 590 279 58 16 chr12 108890662 108890852 -35391637 + MIR SINE MIR 6 203 -59 25 40 0 20 chr12 108891069 108891103 -35391386 + AT_rich Low_complexity Low_complexity 1 34 -15 6546 84 4 0 chr12 108891103 108891508 -35390981 - L1PA10 LINE L1 -1 6167 5765 2226 98 0 43 chr12 108891508 108891540 -35390949 - AluSq SINE Alu 0 313 281 1095 92 23 0 chr12 108891540 108891714 -35390775 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2226 98 0 43 chr12 108891714 108892008 -35390481 - AluSq SINE Alu -32 281 1 6546 84 4 0 chr12 108892008 108892629 -35389860 - L1PA10 LINE L1 -403 5765 5157 25 40 0 20 chr12 108892629 108892644 -35389845 + AT_rich Low_complexity Low_complexity 34 49 0 688 176 0 24 chr12 108892644 108892769 -35389720 - FLAM_C SINE Alu -7 126 5 432 0 0 0 chr12 108892947 108892995 -35389494 + (CA)n Simple_repeat Simple_repeat 2 49 0 1757 97 127 4 chr12 108894133 108894400 -35388089 - AluSx SINE Alu -1 301 2 580 237 7 40 chr12 108894420 108894572 -35387917 + MIR SINE MIR 45 191 -71 2143 299 92 18 chr12 108894579 108895543 -35386946 + L2 LINE L2 1651 2686 -628 1067 122 0 0 chr12 108895558 108895705 -35386784 - AluSp SINE Alu -11 302 156 1335 89 0 0 chr12 108895740 108895908 -35386581 - AluSp SINE Alu -141 172 5 1797 155 21 24 chr12 108895933 108896223 -35386266 - AluJb SINE Alu -23 289 1 407 300 58 102 chr12 108896229 108896259 -35386230 + L2 LINE L2 2697 2727 -587 1857 141 44 39 chr12 108896259 108896622 -35385867 - MLT1A1 LTR MaLR 0 365 1 407 300 58 102 chr12 108896622 108896884 -35385605 + L2 LINE L2 2727 2976 -338 2037 142 7 0 chr12 108897002 108897311 -35385178 + AluSx SINE Alu 1 311 -1 615 263 31 12 chr12 108898148 108898308 -35384181 + MIR SINE MIR 16 178 -84 1758 164 41 14 chr12 108900757 108900976 -35381513 - AluJb SINE Alu 0 312 111 189 0 0 0 chr12 108900976 108900997 -35381492 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1758 164 41 14 chr12 108900997 108901110 -35381379 - AluJb SINE Alu -201 111 3 315 271 107 29 chr12 108901157 108901297 -35381192 - L1MC/D LINE L1 -2031 5777 5627 1894 141 3 14 chr12 108902187 108902477 -35380012 - AluJo SINE Alu -25 287 1 1979 110 50 0 chr12 108902751 108903032 -35379457 + AluSx SINE Alu 1 295 -17 3538 201 55 14 chr12 108903841 108904772 -35377717 + L1MA9 LINE L1 5319 6287 -25 288 251 20 128 chr12 108904794 108904989 -35377500 + MER5B DNA MER1_type 3 176 -2 426 330 11 80 chr12 108905473 108905737 -35376752 + MIR SINE MIR 4 249 -13 2195 114 0 0 chr12 108906045 108906335 -35376154 + AluSq SINE Alu 1 290 -23 397 184 7 103 chr12 108906617 108906753 -35375736 - L1MC5 LINE L1 -76 7885 7763 913 244 129 11 chr12 108906824 108907289 -35375200 - L1ME3A LINE L1 -22 6148 5559 341 336 42 14 chr12 108908168 108908311 -35374178 + L2 LINE L2 3126 3272 0 22 0 0 0 chr12 108908477 108908499 -35373990 + AT_rich Low_complexity Low_complexity 1 22 0 2394 84 3 3 chr12 108908585 108908883 -35373606 - AluSp SINE Alu -15 298 1 21 71 0 0 chr12 108908988 108909030 -35373459 + AT_rich Low_complexity Low_complexity 1 42 0 1755 168 3 19 chr12 108909164 108909473 -35373016 - AluSx SINE Alu -8 304 1 1086 246 20 4 chr12 108910485 108910737 -35371752 + MIR SINE MIR 3 258 -4 820 138 0 62 chr12 108910738 108910883 -35371606 + AluJo SINE Alu 1 136 -176 2071 121 7 10 chr12 108910904 108911211 -35371278 - AluSg SINE Alu -4 306 1 6093 89 29 6 chr12 108911232 108911425 -35371064 - L1PA14 LINE L1 -5 6156 5969 2181 128 3 7 chr12 108911425 108911730 -35370759 - AluSx SINE Alu -8 304 1 6093 89 29 6 chr12 108911730 108912483 -35370006 - L1PA14 LINE L1 -192 5969 5227 604 261 25 87 chr12 108912967 108913243 -35369246 - MIR SINE MIR -8 254 4 238 277 15 0 chr12 108913592 108913657 -35368832 - Charlie8 DNA MER1_type -990 1427 1362 206 354 48 34 chr12 108913948 108914095 -35368394 - L2 LINE L2 -206 3066 2918 197 417 7 7 chr12 108914398 108914537 -35367952 + L3b LINE CR1 1119 1257 -326 2253 122 0 3 chr12 108914934 108915245 -35367244 - AluSx SINE Alu -2 310 1 210 347 84 21 chr12 108915588 108915778 -35366711 - L2 LINE L2 -1034 2280 2079 2420 122 14 3 chr12 108915854 108916214 -35366275 - THE1B LTR MaLR 0 364 1 934 232 72 80 chr12 108916224 108916258 -35366231 - Charlie2 DNA MER1_type 0 2862 2829 1834 177 22 16 chr12 108916258 108916626 -35365863 + MLT1A2 LTR MaLR 1 370 -4 934 232 72 80 chr12 108916626 108917216 -35365273 - Charlie2 DNA MER1_type -33 2829 2243 1621 25 0 0 chr12 108917216 108917413 -35365076 - L1PA2 LINE L1 -1164 4982 4786 7859 11 1 2 chr12 108917413 108918584 -35363905 + L1PA2 LINE L1 4983 6152 -3 227 53 0 26 chr12 108918594 108918632 -35363857 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 6737 221 34 33 chr12 108918723 108920870 -35361619 + L1M4 LINE L1 2340 4487 -1659 1879 167 6 13 chr12 108921034 108921345 -35361144 - AluJb SINE Alu -3 309 1 316 303 34 0 chr12 108921345 108921464 -35361025 + L1M4 LINE L1 2865 2987 -3159 21 71 0 0 chr12 108922230 108922272 -35360217 + AT_rich Low_complexity Low_complexity 1 42 0 428 281 24 92 chr12 108922399 108922694 -35359795 + L1MC4a LINE L1 5688 5962 -159 1021 283 130 16 chr12 108922857 108923055 -35359434 + MLT1J LTR MaLR 7 181 -330 1041 89 0 0 chr12 108923055 108923201 -35359288 + (TTCTCC)n Simple_repeat Simple_repeat 3 148 0 1021 283 130 16 chr12 108923201 108923455 -35359034 + MLT1J LTR MaLR 181 511 0 512 314 19 0 chr12 108924039 108924217 -35358272 - MIR3 SINE MIR -6 202 20 812 170 7 0 chr12 108924854 108924995 -35357494 - FLAM_C SINE Alu -1 142 1 1138 172 12 16 chr12 108925005 108925249 -35357240 - L1MB7 LINE L1 -54 6130 5888 2067 93 7 4 chr12 108925270 108925540 -35356949 - AluSp SINE Alu -29 284 14 479 148 3 0 chr12 108925570 108925662 -35356827 - L1MB8 LINE L1 -286 5892 5811 37 39 0 0 chr12 108927256 108927307 -35355182 + AT_rich Low_complexity Low_complexity 1 51 0 2185 130 0 0 chr12 108929317 108929625 -35352864 - AluSx SINE Alu -4 308 1 1826 171 0 25 chr12 108929872 108930187 -35352302 - AluJb SINE Alu -5 307 1 189 0 0 0 chr12 108930612 108930633 -35351856 + (TTG)n Simple_repeat Simple_repeat 1 21 0 25 65 0 0 chr12 108931922 108931968 -35350521 + AT_rich Low_complexity Low_complexity 1 46 0 434 219 45 101 chr12 108933383 108933513 -35348976 + MIR SINE MIR 77 196 -66 2300 111 0 7 chr12 108933513 108933820 -35348669 - AluSx SINE Alu -5 307 3 434 219 45 101 chr12 108933820 108933867 -35348622 + MIR SINE MIR 196 244 -18 2429 77 3 3 chr12 108934368 108934668 -35347821 + AluSp SINE Alu 1 300 -13 1726 169 40 0 chr12 108934968 108935240 -35347249 + AluJb SINE Alu 4 286 -26 464 214 107 8 chr12 108936200 108936331 -35346158 + MER96 DNA MER1_type? 32 175 0 391 161 37 0 chr12 108936709 108936790 -35345699 - Charlie1 DNA MER1_type 0 2761 2678 2114 137 0 3 chr12 108936884 108937191 -35345298 + AluSq SINE Alu 1 306 -7 1878 151 10 10 chr12 108937218 108937509 -35344980 + AluJb SINE Alu 1 291 -21 297 0 0 0 chr12 108937509 108937542 -35344947 + (CA)n Simple_repeat Simple_repeat 2 34 0 908 228 47 14 chr12 108937542 108937753 -35344736 - Charlie1 DNA MER1_type -2542 219 2 821 153 0 29 chr12 108937772 108937909 -35344580 - FLAM_C SINE Alu 0 133 1 1582 184 58 3 chr12 108938132 108938426 -35344063 - AluSx SINE Alu -2 310 1 25 0 0 0 chr12 108938824 108938849 -35343640 + AT_rich Low_complexity Low_complexity 1 25 0 201 39 0 0 chr12 108939085 108939111 -35343378 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 299 180 98 0 chr12 108940519 108940580 -35341909 + MER5A DNA MER1_type 9 75 -114 1228 189 49 12 chr12 108940605 108940848 -35341641 - AluJb SINE Alu -20 292 41 220 304 196 0 chr12 108940866 108940968 -35341521 + MER5A DNA MER1_type 62 183 -6 216 286 98 27 chr12 108941882 108941994 -35340495 - MIR SINE MIR -29 233 114 403 255 176 13 chr12 108942165 108942318 -35340171 + MIR SINE MIR 21 198 -64 2513 82 0 0 chr12 108943102 108943407 -35339082 + AluSc SINE Alu 1 305 -4 547 290 129 5 chr12 108943484 108943677 -35338812 - MIR SINE MIR -12 250 34 221 0 35 0 chr12 108945631 108945660 -35336829 + (GA)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr12 108946961 108946986 -35335503 + GC_rich Low_complexity Low_complexity 1 25 0 691 167 0 0 chr12 108947195 108947309 -35335180 - FRAM SINE Alu -1 175 62 363 23 0 0 chr12 108950160 108950204 -35332285 + (TG)n Simple_repeat Simple_repeat 2 45 0 229 318 32 0 chr12 108950754 108950817 -35331672 + L2 LINE L2 3247 3311 -2 195 42 0 0 chr12 108951347 108951371 -35331118 + (CTTG)n Simple_repeat Simple_repeat 4 27 0 276 246 16 0 chr12 108951688 108951749 -35330740 - L2 LINE L2 -4 3268 3207 441 299 69 45 chr12 108951805 108952096 -35330393 - MARNA DNA Mariner -241 345 48 29 28 0 0 chr12 108952359 108952395 -35330094 + AT_rich Low_complexity Low_complexity 1 36 0 2099 142 0 19 chr12 108953758 108954075 -35328414 + AluSx SINE Alu 1 311 -1 2102 132 0 10 chr12 108954359 108954662 -35327827 + AluSx SINE Alu 1 300 -12 502 52 0 39 chr12 108954673 108954750 -35327739 + L1MA4A LINE L1 6219 6292 -11 28 29 0 0 chr12 108955529 108955564 -35326925 + AT_rich Low_complexity Low_complexity 1 35 0 833 175 4 159 chr12 108955794 108956045 -35326444 - AluJo SINE Alu -13 299 88 24 0 0 0 chr12 108956488 108956512 -35325977 + AT_rich Low_complexity Low_complexity 1 24 0 2415 68 7 13 chr12 108957110 108957418 -35325071 + AluSq SINE Alu 2 307 -6 2278 107 0 0 chr12 108958549 108958848 -35323641 - AluSx SINE Alu -13 299 1 198 0 0 0 chr12 108959496 108959518 -35322971 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 329 314 0 0 chr12 108959550 108959636 -35322853 - L2 LINE L2 -22 3291 3206 2155 115 0 0 chr12 108960896 108961192 -35321297 + AluSx SINE Alu 1 296 -16 2280 151 18 3 chr12 108961194 108961585 -35320904 - L1MB5 LINE L1 -9 6165 5769 588 272 54 0 chr12 108961636 108961783 -35320706 + MIR SINE MIR 10 164 -98 242 258 10 21 chr12 108962493 108962590 -35319899 + (TA)n Simple_repeat Simple_repeat 2 97 0 1248 98 0 0 chr12 108963454 108963618 -35318871 - AluSg SINE Alu -146 164 1 447 316 115 69 chr12 108963618 108963990 -35318499 - L3 LINE CR1 -197 1380 984 1964 150 0 17 chr12 108963990 108964290 -35318199 + AluSx SINE Alu 1 295 -17 447 316 115 69 chr12 108964290 108964353 -35318136 - L3 LINE CR1 -593 984 925 235 340 21 11 chr12 108964961 108965055 -35317434 + MER5B DNA MER1_type 75 169 -9 21 0 0 0 chr12 108966225 108966246 -35316243 + AT_rich Low_complexity Low_complexity 1 21 0 443 256 23 17 chr12 108967918 108968090 -35314399 - MER104 DNA MER2_type -3 177 5 22 35 0 0 chr12 108968383 108968412 -35314077 + AT_rich Low_complexity Low_complexity 1 29 0 450 235 20 0 chr12 108968778 108968880 -35313609 - MIR SINE MIR -62 146 43 576 264 75 17 chr12 108969157 108969331 -35313158 + MIR SINE MIR 49 232 -30 197 73 0 73 chr12 108970781 108970808 -35311681 + (CATATA)n Simple_repeat Simple_repeat 2 27 -12 2108 125 10 10 chr12 108970808 108971105 -35311384 - AluJb SINE Alu -15 297 1 197 73 0 73 chr12 108971105 108971118 -35311371 + (CATATA)n Simple_repeat Simple_repeat 27 39 0 2102 109 11 0 chr12 108971656 108971932 -35310557 + AluSx SINE Alu 31 309 -3 22 0 0 0 chr12 108972621 108972643 -35309846 + AT_rich Low_complexity Low_complexity 1 22 0 2190 123 0 7 chr12 108974822 108975132 -35307357 - AluSx SINE Alu -4 308 1 21 36 0 0 chr12 108975886 108975914 -35306575 + AT_rich Low_complexity Low_complexity 1 28 0 1752 135 32 0 chr12 108977161 108977442 -35305047 + AluJo SINE Alu 2 291 -21 225 0 0 0 chr12 108978371 108978396 -35304093 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1905 177 3 0 chr12 108978403 108978703 -35303786 + AluSx SINE Alu 4 304 -8 278 290 0 40 chr12 108979013 108979137 -35303352 + L1MC/D LINE L1 5351 5469 -2339 248 343 86 0 chr12 108979917 108980022 -35302467 - L2 LINE L2 0 3313 3200 2778 89 0 18 chr12 108981107 108981487 -35301002 - THE1C LTR MaLR -2 373 1 1499 185 25 7 chr12 108982459 108982745 -35299744 + AluJb SINE Alu 1 291 -21 342 67 0 0 chr12 108983326 108983371 -35299118 + (TC)n Simple_repeat Simple_repeat 1 45 0 209 189 0 0 chr12 108984065 108984102 -35298387 + (CA)n Simple_repeat Simple_repeat 1 37 0 475 354 16 0 chr12 108984462 108984654 -35297835 - L2 LINE L2 -313 3000 2806 1891 127 7 14 chr12 108984722 108985014 -35297475 + AluSx SINE Alu 1 290 -22 27 29 0 0 chr12 108985014 108985048 -35297441 + AT_rich Low_complexity Low_complexity 1 34 0 3376 225 39 78 chr12 108985048 108986244 -35296245 + L1MEc LINE L1 233 1382 -5225 743 179 60 0 chr12 108986269 108986420 -35296069 + L1MEc LINE L1 19 178 -6248 * 6027 217 49 21 chr12 108986415 108988710 -35293779 + L1MEc LINE L1 1569 4053 -2373 1970 30 17 8 chr12 108988710 108988947 -35293542 + AluY SINE Alu 62 300 -11 6027 217 49 21 chr12 108988947 108989448 -35293041 + L1MEc LINE L1 4053 4538 -1888 22 0 0 0 chr12 108989474 108989496 -35292993 + AT_rich Low_complexity Low_complexity 1 22 0 201 226 0 0 chr12 108989816 108989869 -35292620 + A-rich Low_complexity Low_complexity 1 53 0 504 200 147 13 chr12 108990166 108990316 -35292173 + MIR SINE MIR 49 218 -44 180 261 0 0 chr12 108990690 108990755 -35291734 + CT-rich Low_complexity Low_complexity 2 66 0 2145 126 35 41 chr12 108991447 108991813 -35290676 - THE1B LTR MaLR 0 364 1 2137 131 0 25 chr12 108992404 108992724 -35289765 + AluSx SINE Alu 1 312 0 188 119 0 48 chr12 108995965 108996007 -35286482 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 194 152 0 43 chr12 108997272 108997318 -35285171 + CT-rich Low_complexity Low_complexity 5 48 0 459 52 0 0 chr12 108997683 108997741 -35284748 + (CA)n Simple_repeat Simple_repeat 1 58 0 226 174 0 43 chr12 108998922 108998968 -35283521 - L1M2b LINE L1 -7016 193 150 853 264 4 25 chr12 108999027 108999262 -35283227 + Charlie1a DNA MER1_type 50 279 -1176 2080 94 4 14 chr12 108999262 108999538 -35282951 - AluSq SINE Alu -16 297 25 1729 166 4 0 chr12 108999796 109000061 -35282428 - AluJb SINE Alu -12 300 35 619 155 0 0 chr12 109000999 109001096 -35281393 - AluJ/FLAM SINE Alu -215 97 1 28 29 0 0 chr12 109001400 109001435 -35281054 + AT_rich Low_complexity Low_complexity 1 35 0 1944 178 30 0 chr12 109001539 109001937 -35280552 - L1MA8 LINE L1 0 6291 5882 1037 121 30 81 chr12 109002214 109002412 -35280077 - MLT2A1 LTR ERVL -256 188 1 990 149 6 0 chr12 109002480 109002641 -35279848 - L1MA8 LINE L1 -599 5692 5531 704 177 33 6 chr12 109002644 109002825 -35279664 + L1MA7 LINE L1 6106 6291 0 558 114 11 0 chr12 109003494 109003582 -35278907 + AluSg/x SINE Alu 208 296 -16 563 204 9 30 chr12 109004366 109004595 -35277894 + CT-rich Low_complexity Low_complexity 1 224 0 326 206 5 27 chr12 109004606 109004792 -35277697 + CT-rich Low_complexity Low_complexity 1 181 0 638 230 51 43 chr12 109005286 109005988 -35276501 - L1MA4A LINE L1 0 6180 5597 1235 154 14 19 chr12 109005988 109006202 -35276287 - AluJb SINE Alu 0 312 100 1278 145 10 10 chr12 109006202 109006409 -35276080 + MLT1A1 LTR MaLR 157 363 -2 302 275 6 22 chr12 109007864 109008042 -35274447 + GA-rich Low_complexity Low_complexity 3 177 0 299 269 11 0 chr12 109009460 109009553 -35272936 + (TG)n Simple_repeat Simple_repeat 1 94 0 2669 174 42 29 chr12 109009582 109010170 -35272319 + LTR8A LTR ERV1 11 606 -121 2727 124 29 45 chr12 109010170 109010661 -35271828 - MER41B LTR ERV1 0 635 153 445 152 25 0 chr12 109011674 109011753 -35270736 - AluJo SINE Alu -176 136 56 739 161 0 23 chr12 109011758 109011888 -35270601 - FRAM SINE Alu -3 173 47 564 105 47 0 chr12 109012443 109012529 -35269960 + MLT1A2 LTR MaLR 285 374 0 267 103 0 0 chr12 109015151 109015190 -35267299 + (TC)n Simple_repeat Simple_repeat 2 40 0 211 196 18 27 chr12 109015190 109015302 -35267187 + (TA)n Simple_repeat Simple_repeat 1 111 0 197 159 23 0 chr12 109015447 109015491 -35266998 + (TA)n Simple_repeat Simple_repeat 1 45 0 1389 272 45 14 chr12 109015650 109016449 -35266040 + L1MEc LINE L1 2054 2836 -3379 21 0 0 0 chr12 109016523 109016544 -35265945 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr12 109016601 109016643 -35265846 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr12 109016771 109016793 -35265696 + AT_rich Low_complexity Low_complexity 1 22 0 2059 119 7 3 chr12 109021554 109021848 -35260641 - AluSg SINE Alu -14 296 2 615 105 29 19 chr12 109022209 109022314 -35260175 - AluSq/x SINE Alu -206 106 1 453 131 12 0 chr12 109022318 109022402 -35260087 - L1MA2 LINE L1 -164 6140 6056 209 200 0 0 chr12 109022699 109022739 -35259750 + A-rich Low_complexity Low_complexity 2 41 0 2710 97 17 12 chr12 109023320 109023723 -35258766 - L1PB1 LINE L1 -1 6150 5746 641 164 9 0 chr12 109024243 109024353 -35258136 + Tigger5 DNA MER2_type 2212 2322 -1 1294 188 9 75 chr12 109024354 109024622 -35257867 + MLT1A1 LTR MaLR 68 313 -52 1906 169 50 14 chr12 109024622 109024984 -35257505 - THE1C LTR MaLR 0 375 1 1294 188 9 75 chr12 109024984 109025034 -35257455 + MLT1A1 LTR MaLR 313 365 0 849 186 0 19 chr12 109025738 109025899 -35256590 - AluJo/FRAM SINE Alu -19 293 136 1845 152 17 10 chr12 109025900 109026202 -35256287 - AluSx SINE Alu -8 304 1 393 327 62 29 chr12 109026911 109027186 -35255303 + L2 LINE L2 713 996 -2318 489 219 41 0 chr12 109028027 109028150 -35254339 + MLT1A2 LTR MaLR 1 128 -246 332 172 0 0 chr12 109028296 109028354 -35254135 + Tigger2 DNA MER2_type 1 58 -2660 372 210 34 118 chr12 109028354 109028405 -35254084 + Tigger2 DNA MER2_type 2610 2664 -54 2058 118 3 3 chr12 109028405 109028692 -35253797 - AluSx SINE Alu -25 287 1 372 210 34 118 chr12 109028692 109028759 -35253730 + Tigger2 DNA MER2_type 2664 2718 0 303 174 72 14 chr12 109028768 109028966 -35253523 + (TA)n Simple_repeat Simple_repeat 1 209 0 540 116 49 6 chr12 109028969 109029133 -35253356 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 1082 270 31 24 chr12 109029138 109029553 -35252936 + L1MD3 LINE L1 7519 7936 -59 824 217 24 99 chr12 109029621 109029953 -35252536 + L1ME1 LINE L1 5297 5603 -563 1952 158 127 10 chr12 109029964 109030382 -35252107 - LTR1B LTR ERV1 0 826 360 300 293 28 19 chr12 109031618 109031724 -35250765 + GA-rich Low_complexity Low_complexity 1 107 0 1849 141 7 3 chr12 109032269 109032553 -35249936 - AluSx SINE Alu -27 285 1 933 183 48 65 chr12 109032553 109032843 -35249646 - L1MB3 LINE L1 -41 6142 5858 1062 231 22 19 chr12 109033034 109033350 -35249139 - MLT1C LTR MaLR -2 465 149 2404 80 17 0 chr12 109033350 109033700 -35248789 - L1PB1 LINE L1 -25 6126 5771 753 198 19 0 chr12 109033700 109033862 -35248627 - MLT1C LTR MaLR -300 167 3 1304 148 65 0 chr12 109033945 109034161 -35248328 - MER30 DNA MER1_type 0 230 1 223 276 9 95 chr12 109034535 109034651 -35247838 - MIR SINE MIR -70 192 87 2028 137 3 3 chr12 109034877 109035183 -35247306 - AluSx SINE Alu -6 306 1 880 249 48 16 chr12 109035338 109035647 -35246842 + L1ME1 LINE L1 5843 6161 -5 901 70 25 13 chr12 109035760 109035917 -35246572 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 439 215 42 3 chr12 109035933 109036245 -35246244 + (TCTA)n Simple_repeat Simple_repeat 1 324 0 781 144 26 17 chr12 109036269 109036613 -35245876 + (TCTA)n Simple_repeat Simple_repeat 1 347 0 1870 183 99 2 chr12 109037398 109037792 -35244697 - MSTB1 LTR MaLR 0 432 1 2392 78 7 0 chr12 109038448 109038807 -35243682 - AluY SINE Alu 0 361 1 213 94 0 0 chr12 109038885 109038917 -35243572 + (CA)n Simple_repeat Simple_repeat 2 33 0 1474 161 7 4 chr12 109039266 109039539 -35242950 - L1MC1 LINE L1 -10 6323 6050 242 293 36 62 chr12 109040364 109040457 -35242032 - L1MCc LINE L1 -6186 237 143 1676 200 37 115 chr12 109040457 109040728 -35241761 - MLT2B3 LTR ERVL 0 554 353 2060 132 0 21 chr12 109040728 109041054 -35241435 + AluSx SINE Alu 1 320 0 1676 200 37 115 chr12 109041054 109041382 -35241107 - MLT2B3 LTR ERVL -201 353 1 242 293 36 62 chr12 109041382 109041513 -35240976 - L1MCc LINE L1 -6280 143 19 527 273 42 24 chr12 109042852 109043017 -35239472 + MER5B DNA MER1_type 6 173 -5 1013 76 25 25 chr12 109043239 109043397 -35239092 - AluSc SINE Alu -18 291 134 249 260 0 0 chr12 109044021 109044098 -35238391 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 350 256 33 11 chr12 109044105 109044195 -35238294 - L1MC4 LINE L1 -1339 6703 6612 373 94 44 44 chr12 109044195 109044354 -35238135 + (TA)n Simple_repeat Simple_repeat 2 160 0 591 200 0 0 chr12 109044452 109044587 -35237902 - L1MB4 LINE L1 -2 6178 6044 24 0 0 0 chr12 109044601 109044625 -35237864 + AT_rich Low_complexity Low_complexity 1 24 0 251 173 36 0 chr12 109044625 109044735 -35237754 + (TA)n Simple_repeat Simple_repeat 2 115 0 36 76 0 0 chr12 109044748 109044814 -35237675 + AT_rich Low_complexity Low_complexity 1 66 0 1991 104 10 52 chr12 109045096 109045404 -35237085 + AluSc SINE Alu 1 295 -14 180 0 0 0 chr12 109045612 109045632 -35236857 + (T)n Simple_repeat Simple_repeat 1 20 0 390 239 0 46 chr12 109045766 109045875 -35236614 - L1M3 LINE L1 -556 5624 5521 461 194 19 9 chr12 109045886 109045994 -35236495 + L1MB7 LINE L1 5853 5961 -223 24 32 0 0 chr12 109046371 109046402 -35236087 + AT_rich Low_complexity Low_complexity 1 31 0 952 137 256 64 chr12 109046612 109046925 -35235564 + MLT1A2 LTR MaLR 1 373 -1 32 26 0 0 chr12 109046963 109047002 -35235487 + AT_rich Low_complexity Low_complexity 1 39 0 213 221 52 52 chr12 109048116 109048193 -35234296 + MIR SINE MIR 131 207 -55 336 48 0 0 chr12 109048999 109049041 -35233448 + (TG)n Simple_repeat Simple_repeat 1 42 0 344 164 0 0 chr12 109049308 109049369 -35233120 - MADE1 DNA Mariner -2 78 18 296 283 5 38 chr12 109049373 109049557 -35232932 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 * 462 270 0 12 chr12 109049466 109049764 -35232725 + (TA)n Simple_repeat Simple_repeat 1 294 0 416 281 6 0 chr12 109049779 109049957 -35232532 + (TA)n Simple_repeat Simple_repeat 2 180 0 382 247 0 48 chr12 109049938 109050124 -35232365 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 * 466 284 6 0 chr12 109050133 109050302 -35232187 + (TA)n Simple_repeat Simple_repeat 1 170 0 1469 200 3 77 chr12 109050306 109050681 -35231808 - MER7A DNA MER2_type 0 346 2 2053 162 80 15 chr12 109050728 109051130 -35231359 + MSTA LTR MaLR 1 428 0 308 225 0 11 chr12 109051774 109051863 -35230626 + CT-rich Low_complexity Low_complexity 4 91 0 1074 92 17 6 chr12 109051874 109052048 -35230441 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 863 124 16 0 chr12 109052048 109052169 -35230320 - AluSg/x SINE Alu -32 278 156 1151 214 105 3 chr12 109052880 109053165 -35229324 - MER7A DNA MER2_type 0 346 35 4064 71 2 42 chr12 109053890 109054467 -35228022 + MER41A LTR ERV1 1 554 0 34 55 0 0 chr12 109054504 109054559 -35227930 + AT_rich Low_complexity Low_complexity 1 55 0 1191 194 24 24 chr12 109054559 109054852 -35227637 - L1MA7 LINE L1 -1 6290 5998 290 266 37 0 chr12 109055661 109055770 -35226719 + MLT1I LTR MaLR 297 409 0 2629 106 0 8 chr12 109055806 109056173 -35226316 + THE1B LTR MaLR 1 364 0 1802 174 8 8 chr12 109056455 109056804 -35225685 + MLT1A1 LTR MaLR 1 349 -16 1115 130 24 23 chr12 109056804 109057109 -35225380 - MLT2A2 LTR ERVL 0 453 248 760 177 13 102 chr12 109057210 109057305 -35225184 - L1MA9 LINE L1 -267 6045 5943 2458 191 130 20 chr12 109057305 109057959 -35224530 + LTR8A LTR ERV1 2 727 0 2344 66 7 3 chr12 109057960 109058261 -35224228 - AluY SINE Alu -9 302 1 760 177 13 102 chr12 109058261 109058389 -35224100 - L1MA9 LINE L1 -368 5944 5840 5417 68 4 1 chr12 109058517 109059206 -35223283 + LTR8 LTR ERV1 1 691 0 2013 116 84 66 chr12 109059411 109059851 -35222638 - LTR7 LTR ERV1 -2 448 1 2657 69 5 13 chr12 109059851 109060244 -35222245 - HERVH LTR ERV1 0 7713 7324 1069 184 38 0 chr12 109060244 109060456 -35222033 - HERVH LTR ERV1 -1894 5819 5600 467 183 122 13 chr12 109060460 109060690 -35221799 - HERVH LTR ERV1 -2567 5146 4892 1869 246 35 42 chr12 109061185 109061905 -35220584 - L1MEc LINE L1 -1767 4448 3734 1798 271 52 18 chr12 109061906 109062110 -35220379 - L1MEc LINE L1 -2375 3840 3644 1688 215 18 3 chr12 109062110 109062492 -35219997 + MLT1B LTR MaLR 3 390 0 1798 271 52 18 chr12 109062492 109063248 -35219241 - L1MEc LINE L1 -2571 3644 2847 1266 185 83 33 chr12 109063267 109063629 -35218860 - LTR25 LTR ERV1 0 794 415 269 175 143 0 chr12 109063600 109063663 -35218826 - MER51A LTR ERV1 -354 280 209 * 388 161 0 119 chr12 109063795 109063913 -35218576 - MER61E LTR ERV1 -461 108 5 1344 281 21 24 chr12 109063922 109064672 -35217817 - L1MEc LINE L1 -3372 2843 2134 11033 85 8 10 chr12 109064789 109066438 -35216051 + HERVH LTR ERV1 1342 2987 -4726 817 149 20 0 chr12 109066432 109066580 -35215909 + HERVH LTR ERV1 3140 3290 -4423 * 801 180 13 7 chr12 109066570 109066720 -35215769 + HERVH LTR ERV1 3492 3642 -4071 * 503 196 10 0 chr12 109067253 109067350 -35215139 - MER90 LTR ERV1 0 575 478 670 219 38 65 chr12 109067350 109067642 -35214847 + MLT1D LTR MaLR 1 284 -221 293 168 44 7 chr12 109067728 109067865 -35214624 + (TA)n Simple_repeat Simple_repeat 2 143 0 249 205 24 0 chr12 109067908 109068035 -35214454 + (TA)n Simple_repeat Simple_repeat 2 131 0 558 236 7 0 chr12 109068075 109068219 -35214270 - L1MB4 LINE L1 -2 6178 6034 232 96 58 0 chr12 109068223 109068275 -35214214 - L1MB4 LINE L1 -163 6011 5957 1883 119 0 61 chr12 109068437 109068749 -35213740 + AluSx SINE Alu 1 293 -19 312 27 0 0 chr12 109068781 109068818 -35213671 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr12 109068828 109068851 -35213638 + AT_rich Low_complexity Low_complexity 1 23 0 182 362 32 11 chr12 109069341 109069435 -35213054 - L2 LINE L2 -501 2813 2718 387 60 0 0 chr12 109069538 109069588 -35212901 + (TA)n Simple_repeat Simple_repeat 2 51 0 382 110 41 0 chr12 109069588 109069661 -35212828 - L1PB3 LINE L1 -9 6145 6070 616 202 6 52 chr12 109071533 109071706 -35210783 - MER20 DNA MER1_type -25 194 30 490 293 21 21 chr12 109071790 109071978 -35210511 + MER5A DNA MER1_type 2 189 0 1635 196 3 10 chr12 109072064 109072417 -35210072 + AluJo SINE Alu 1 534 -59 1185 0 22 39 chr12 109072417 109072599 -35209890 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1635 196 3 10 chr12 109072599 109072659 -35209830 + AluJo SINE Alu 534 593 0 288 0 0 0 chr12 109072982 109073014 -35209475 + (CA)n Simple_repeat Simple_repeat 1 32 0 347 189 8 28 chr12 109073339 109073477 -35209012 + CT-rich Low_complexity Low_complexity 1 135 0 1625 139 8 11 chr12 109073642 109073908 -35208581 - AluJb SINE Alu -20 292 28 32 0 0 0 chr12 109073911 109073943 -35208546 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 109074412 109074442 -35208047 + AT_rich Low_complexity Low_complexity 1 30 0 201 132 0 0 chr12 109074466 109074504 -35207985 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1910 118 59 0 chr12 109074987 109075318 -35207171 + AluSx SINE Alu 1 347 0 322 371 40 7 chr12 109075871 109076022 -35206467 - MIR SINE MIR -12 250 95 230 200 24 24 chr12 109076948 109077033 -35205456 + L1MC4 LINE L1 6619 6703 -1339 207 232 0 18 chr12 109077034 109077118 -35205371 + (TA)n Simple_repeat Simple_repeat 1 82 0 2237 107 0 7 chr12 109077178 109077488 -35205001 - AluSc SINE Alu -1 308 1 3254 104 16 22 chr12 109077785 109078295 -35204194 - MER84 LTR ERV1 0 507 1 919 270 39 32 chr12 109078690 109079097 -35203392 - L1M4 LINE L1 -2986 3160 2748 1991 142 53 11 chr12 109079097 109079457 -35203032 + THE1C LTR MaLR 1 375 0 919 270 39 32 chr12 109079457 109079515 -35202974 - L1M4 LINE L1 -3398 2748 2692 1312 276 58 69 chr12 109079522 109080707 -35201782 + L1ME LINE L1 718 1889 -4507 1583 214 0 10 chr12 109081429 109081738 -35200751 - AluJo SINE Alu -6 306 1 685 268 91 21 chr12 109082360 109082733 -35199756 - MER50 LTR ERV1 -326 408 10 685 271 48 95 chr12 109083293 109083571 -35198918 + L1ME LINE L1 2876 3117 -3098 1717 201 0 3 chr12 109083571 109083874 -35198615 + AluJb SINE Alu 1 302 -10 685 271 48 95 chr12 109083874 109084155 -35198334 + L1ME LINE L1 3117 3409 -2806 201 74 0 0 chr12 109084343 109084370 -35198119 + (A)n Simple_repeat Simple_repeat 1 27 0 1166 78 0 0 chr12 109084476 109084618 -35197871 + AluSp/q SINE Alu 156 297 -16 385 322 61 20 chr12 109084621 109084916 -35197573 + L1ME LINE L1 3776 4082 -2133 1626 178 0 44 chr12 109084958 109085279 -35197210 - AluJo SINE Alu -5 307 1 417 277 15 34 chr12 109085381 109085587 -35196902 + L1ME LINE L1 5576 5777 -454 426 118 0 15 chr12 109085905 109085973 -35196516 + MLT1A2 LTR MaLR 4 70 -304 463 198 38 0 chr12 109085987 109086093 -35196396 + MER47A DNA MER2_type 31 140 -226 2017 119 3 23 chr12 109086815 109087117 -35195372 + AluSx SINE Alu 1 296 -16 2233 119 0 0 chr12 109087594 109087889 -35194600 + AluSg SINE Alu 1 295 -15 930 119 0 8 chr12 109088386 109088520 -35193969 + AluJb SINE Alu 1 133 -179 219 167 0 0 chr12 109088523 109088565 -35193924 + A-rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr12 109089492 109089536 -35192953 + AT_rich Low_complexity Low_complexity 1 44 0 2220 113 0 7 chr12 109089750 109090050 -35192439 + AluSx SINE Alu 1 298 -14 324 286 118 25 chr12 109090069 109090230 -35192259 - L2 LINE L2 -899 2415 2240 375 284 77 49 chr12 109090818 109091001 -35191488 - MIR3 SINE MIR -7 201 14 2078 138 3 6 chr12 109091031 109091343 -35191146 + AluSx SINE Alu 1 311 -1 2372 125 19 21 chr12 109091571 109091947 -35190542 - THE1C LTR MaLR 0 375 1 3117 113 89 0 chr12 109092342 109092802 -35189687 + MER61D LTR ERV1 1 501 0 2185 122 40 6 chr12 109093198 109093550 -35188939 + THE1B LTR MaLR 1 364 0 1939 144 10 19 chr12 109094036 109094172 -35188317 + AluSx SINE Alu 2 138 -174 2291 92 0 7 chr12 109094172 109094478 -35188011 + AluSq SINE Alu 1 304 -9 1939 144 10 19 chr12 109094478 109094653 -35187836 + AluSx SINE Alu 138 310 -2 616 204 37 32 chr12 109094678 109094834 -35187655 - MIR SINE MIR -21 241 84 389 230 10 50 chr12 109095001 109095101 -35187388 - L2 LINE L2 0 3313 3218 1068 260 24 7 chr12 109095102 109095394 -35187095 + HERV16 LTR ERVL 1698 1994 -3002 1359 192 48 11 chr12 109095480 109095603 -35186886 + AluJb SINE Alu 1 118 -194 270 73 0 0 chr12 109095603 109095644 -35186845 + (CA)n Simple_repeat Simple_repeat 2 42 0 1359 192 48 11 chr12 109095644 109095791 -35186698 + AluJb SINE Alu 118 281 -31 2341 112 0 0 chr12 109095879 109096191 -35186298 - AluSx SINE Alu 0 312 1 1102 78 32 13 chr12 109096432 109096586 -35185903 - AluYa5 SINE Alu -14 297 141 260 189 0 0 chr12 109096586 109096639 -35185850 + Alu SINE Alu 249 301 0 * 1761 135 0 0 chr12 109096635 109096909 -35185580 + MER66B LTR ERV1 213 486 0 1363 188 77 30 chr12 109096909 109097277 -35185212 + L1ME1 LINE L1 5780 6161 -5 1025 254 78 68 chr12 109097500 109097913 -35184576 + L2 LINE L2 2897 3313 0 1890 189 0 0 chr12 109098012 109098318 -35184171 - AluJb SINE Alu -6 306 1 480 298 41 18 chr12 109098347 109098555 -35183934 + L1MC4a LINE L1 5541 5662 -459 2074 137 0 0 chr12 109098555 109098855 -35183634 + AluSx SINE Alu 1 300 -12 480 298 41 18 chr12 109098855 109098929 -35183560 + L1MC4a LINE L1 5662 5733 -388 898 284 52 8 chr12 109098964 109099214 -35183275 + MIR SINE MIR 1 261 -1 21 0 0 0 chr12 109099218 109099239 -35183250 + AT_rich Low_complexity Low_complexity 1 21 0 405 270 16 71 chr12 109099294 109099420 -35183069 + L2 LINE L2 3148 3266 -6 597 211 31 92 chr12 109099599 109099632 -35182857 + Charlie1 DNA MER1_type 1586 1619 -1142 1873 153 10 7 chr12 109099632 109099933 -35182556 + AluJb SINE Alu 6 307 -5 597 211 31 92 chr12 109099933 109100126 -35182363 + Charlie1 DNA MER1_type 1619 1798 -963 2194 106 27 0 chr12 109100476 109100777 -35181712 + AluSx SINE Alu 1 309 -3 288 0 0 0 chr12 109100945 109100977 -35181512 + (CA)n Simple_repeat Simple_repeat 1 32 0 187 356 6 72 chr12 109101306 109101486 -35181003 + L3b LINE CR1 1355 1522 -61 1228 140 0 42 chr12 109101874 109102088 -35180401 + MER3 DNA MER1_type 1 205 -4 468 117 0 0 chr12 109102122 109102199 -35180290 + (CA)n Simple_repeat Simple_repeat 2 78 0 494 262 47 42 chr12 109102728 109102919 -35179570 - MIR SINE MIR -70 192 1 2004 123 10 3 chr12 109103387 109103679 -35178810 + AluSq SINE Alu 1 294 -19 655 212 152 12 chr12 109103734 109103899 -35178590 - MIR SINE MIR -74 188 1 395 317 172 11 chr12 109103899 109104079 -35178410 + MIR SINE MIR 24 232 -30 22 56 0 0 chr12 109104556 109104592 -35177897 + AT_rich Low_complexity Low_complexity 1 36 0 2235 117 0 0 chr12 109104592 109104882 -35177607 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr12 109105177 109105200 -35177289 + AT_rich Low_complexity Low_complexity 1 23 0 1911 158 23 0 chr12 109105408 109105711 -35176778 + AluSx SINE Alu 1 310 -2 320 292 13 77 chr12 109106369 109106559 -35175930 + MIR3 SINE MIR 9 191 -61 1412 96 101 0 chr12 109106802 109107011 -35175478 - MER30 DNA MER1_type 0 230 1 346 191 16 4 chr12 109107050 109107123 -35175366 - MIR SINE MIR -63 145 81 1004 148 0 0 chr12 109107130 109107272 -35175217 + AluSg/x SINE Alu 151 292 -18 1964 157 14 0 chr12 109107294 109107588 -35174901 + AluJo SINE Alu 1 298 -14 263 214 18 0 chr12 109107704 109107760 -35174729 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 258 299 56 56 chr12 109109687 109109703 -35172786 - L2 LINE L2 -907 2407 2392 2047 111 45 0 chr12 109109703 109109992 -35172497 + AluSx SINE Alu 3 304 -8 258 299 56 56 chr12 109109992 109110172 -35172317 - L2 LINE L2 -921 2393 2211 376 234 0 0 chr12 109110715 109110822 -35171667 - L1MA7 LINE L1 -7 6284 6178 329 107 36 0 chr12 109110828 109110884 -35171605 - L1MA9 LINE L1 -233 6079 6022 342 0 0 0 chr12 109112377 109112415 -35170074 + (TA)n Simple_repeat Simple_repeat 2 39 0 2191 144 0 0 chr12 109112418 109112730 -35169759 - AluSx SINE Alu 0 312 1 1780 177 40 10 chr12 109113969 109114269 -35168220 + AluJb SINE Alu 1 309 -3 21 0 0 0 chr12 109115769 109115790 -35166699 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 109115861 109115889 -35166600 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 109117847 109117867 -35164622 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3658 40 22 0 chr12 109117903 109118350 -35164139 - L1PA5 LINE L1 -8 6146 5690 2014 138 7 3 chr12 109118959 109119249 -35163240 + AluSx SINE Alu 1 291 -21 200 196 0 39 chr12 109119409 109119460 -35163029 - L2 LINE L2 -4 3309 3261 1837 174 26 3 chr12 109119500 109119805 -35162684 + AluJb SINE Alu 1 312 0 295 265 36 0 chr12 109120381 109120464 -35162025 + GA-rich Low_complexity Low_complexity 5 90 0 494 195 163 0 chr12 109120464 109120587 -35161902 - MLT2B1 LTR ERVL -52 468 326 253 259 163 68 chr12 109120656 109120715 -35161774 + MER5A DNA MER1_type 22 74 -115 2381 86 0 0 chr12 109120715 109121017 -35161472 + AluSq SINE Alu 2 303 -10 253 259 163 68 chr12 109121017 109121104 -35161385 + MER5A DNA MER1_type 74 182 -7 2007 132 0 0 chr12 109121883 109122193 -35160296 - AluSx SINE Alu 0 310 1 461 212 9 9 chr12 109122491 109122604 -35159885 + L1MD3 LINE L1 7866 7978 -17 1098 255 29 4 chr12 109123244 109123487 -35159002 + MIR SINE MIR 13 261 -1 2508 54 0 0 chr12 109123769 109124067 -35158422 - AluY SINE Alu -13 298 1 1040 269 74 42 chr12 109124208 109124280 -35158209 + MLT1J LTR MaLR 1 69 -442 1931 151 11 0 chr12 109124280 109124591 -35157898 + AluSx SINE Alu 1 314 0 1040 269 74 42 chr12 109124591 109124964 -35157525 + MLT1J LTR MaLR 69 461 -50 793 269 31 73 chr12 109125140 109125197 -35157292 - L1ME3A LINE L1 -230 5940 5882 1549 156 71 84 chr12 109125197 109125576 -35156913 + MLT1A2 LTR MaLR 1 374 0 793 269 31 73 chr12 109125576 109125942 -35156547 - L1ME3A LINE L1 -288 5882 5535 437 223 11 0 chr12 109126005 109126099 -35156390 - Tigger7 DNA MER2_type -9 2478 2384 * 1341 208 15 4 chr12 109126092 109126352 -35156137 - Tigger7 DNA MER2_type -2224 263 1 698 241 18 43 chr12 109126424 109126709 -35155780 + MLT1J LTR MaLR 224 390 0 361 183 63 48 chr12 109126836 109126962 -35155527 - L1ME3A LINE L1 -846 5300 5173 1198 194 110 10 chr12 109127225 109127535 -35154954 - MER58B DNA MER1_type 0 341 1 458 294 148 84 chr12 109128351 109129282 -35153207 + L1M2 LINE L1 392 1238 -5611 1431 120 0 23 chr12 109129906 109130123 -35152366 - AluSg/x SINE Alu -14 296 85 2351 88 0 3 chr12 109130204 109130510 -35151979 - AluSx SINE Alu -7 305 1 243 163 0 0 chr12 109131640 109131683 -35150806 - MIR SINE MIR -68 140 98 702 256 80 5 chr12 109132200 109132399 -35150090 - MIR SINE MIR -1 261 48 328 293 106 0 chr12 109132891 109133014 -35149475 - MIR3 SINE MIR -5 203 68 296 193 12 24 chr12 109133699 109133782 -35148707 + MER96 DNA MER1_type? 91 172 -3 2340 96 3 0 chr12 109135220 109135522 -35146967 - AluSq SINE Alu -10 303 1 24 32 0 0 chr12 109135538 109135569 -35146920 + AT_rich Low_complexity Low_complexity 1 31 0 732 285 89 8 chr12 109135635 109135870 -35146619 - MIR SINE MIR 0 262 9 212 57 0 29 chr12 109135900 109135935 -35146554 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1611 133 4 0 chr12 109135951 109136184 -35146305 - AluSx SINE Alu -78 234 1 24 32 0 0 chr12 109136200 109136231 -35146258 + AT_rich Low_complexity Low_complexity 1 31 0 732 285 89 8 chr12 109136297 109136532 -35145957 - MIR SINE MIR 0 262 9 212 57 0 29 chr12 109136562 109136597 -35145892 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1611 133 4 0 chr12 109136613 109136846 -35145643 - AluSx SINE Alu -78 234 1 24 32 0 0 chr12 109136862 109136893 -35145596 + AT_rich Low_complexity Low_complexity 1 31 0 732 285 89 8 chr12 109136959 109137194 -35145295 - MIR SINE MIR 0 262 9 212 57 0 29 chr12 109137224 109137259 -35145230 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1473 127 64 0 chr12 109137275 109137495 -35144994 - AluSx SINE Alu -78 234 1 2367 108 0 0 chr12 109137553 109137858 -35144631 + AluSg SINE Alu 1 305 -5 200 298 0 0 chr12 109137941 109137988 -35144501 - MIR3 SINE MIR -23 185 139 760 129 23 0 chr12 109138070 109138202 -35144287 + MSTB2 LTR MaLR 315 449 -8 374 279 0 45 chr12 109139027 109139138 -35143351 - L2 LINE L2 -17 3255 3150 300 265 12 0 chr12 109139922 109140041 -35142448 + L1MC4a LINE L1 5756 5824 -297 1821 148 41 0 chr12 109140083 109140380 -35142109 - AluSx SINE Alu 0 308 1 1746 158 34 10 chr12 109140597 109140894 -35141595 + AluJo SINE Alu 1 304 -8 206 338 38 23 chr12 109141406 109141539 -35140950 + MIR SINE MIR 77 211 -51 2033 133 7 7 chr12 109141546 109141854 -35140635 + AluSx SINE Alu 1 308 -4 927 164 16 5 chr12 109142483 109142672 -35139817 + L1MA9 LINE L1 4848 5038 -1108 * 2275 194 57 30 chr12 109142669 109143267 -35139222 + L1MA9 LINE L1 5645 6258 -54 1890 158 10 3 chr12 109143504 109143802 -35138687 - AluJb SINE Alu -10 302 3 3682 254 41 32 chr12 109143807 109145211 -35137278 - L1MEc LINE L1 -4944 1452 37 461 239 99 42 chr12 109146964 109147106 -35135383 - MIR SINE MIR -12 250 101 * 764 305 114 49 chr12 109147081 109147652 -35134837 - L2 LINE L2 -994 2320 1713 21 0 0 0 chr12 109148305 109148326 -35134163 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 109148391 109148414 -35134075 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 109148611 109148639 -35133850 + AT_rich Low_complexity Low_complexity 1 28 0 440 273 156 0 chr12 109149027 109149181 -35133308 - MIR SINE MIR -80 182 5 3308 119 101 60 chr12 109149204 109149916 -35132573 + L1MC1 LINE L1 5592 6332 -1 1419 156 0 29 chr12 109149923 109150166 -35132323 + AluJo SINE Alu 66 301 -11 1887 87 20 4 chr12 109150410 109150664 -35131825 + AluSq SINE Alu 53 310 -3 746 93 19 0 chr12 109151291 109151399 -35131090 + HY1 scRNA scRNA 1 110 -2 33 56 0 0 chr12 109151401 109151455 -35131034 + AT_rich Low_complexity Low_complexity 1 54 0 2017 119 3 23 chr12 109152483 109152785 -35129704 + AluSx SINE Alu 1 296 -16 2233 119 0 0 chr12 109153262 109153557 -35128932 + AluSg SINE Alu 1 295 -15 930 119 0 8 chr12 109154054 109154188 -35128301 + AluJb SINE Alu 1 133 -179 219 167 0 0 chr12 109154191 109154233 -35128256 + A-rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr12 109155160 109155204 -35127285 + AT_rich Low_complexity Low_complexity 1 44 0 2220 113 0 7 chr12 109155418 109155718 -35126771 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr12 109156787 109156815 -35125674 + AT_rich Low_complexity Low_complexity 1 28 0 219 279 131 16 chr12 109157472 109157594 -35124895 + MIR3 SINE MIR 9 144 -64 25 31 0 0 chr12 109158464 109158496 -35123993 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr12 109158920 109158945 -35123544 + AT_rich Low_complexity Low_complexity 1 25 0 2310 101 0 0 chr12 109159451 109159747 -35122742 + AluSx SINE Alu 1 296 -16 266 303 30 20 chr12 109161134 109161233 -35121256 - L2 LINE L2 -2 3270 3171 274 382 171 4 chr12 109161550 109161825 -35120664 - L2 LINE L2 -559 2755 2435 1588 137 75 38 chr12 109161975 109162268 -35120221 - AluJb SINE Alu -8 304 1 21 36 0 0 chr12 109163193 109163221 -35119268 + AT_rich Low_complexity Low_complexity 1 28 0 803 219 27 11 chr12 109163375 109163558 -35118931 + L2 LINE L2 665 850 -2464 434 283 118 7 chr12 109163571 109163723 -35118766 - MIR SINE MIR -93 169 1 272 276 119 22 chr12 109163733 109163867 -35118622 + L2 LINE L2 858 1004 -2310 1000 184 19 28 chr12 109163914 109164126 -35118363 + MER2 DNA MER2_type 1 210 -135 2295 111 0 13 chr12 109164138 109164454 -35118035 - AluSx SINE Alu 0 312 1 381 194 28 0 chr12 109164454 109164526 -35117963 + MER2 DNA MER2_type 271 344 -1 467 236 199 68 chr12 109164528 109164854 -35117635 + MLT1K LTR MaLR 197 565 -23 861 127 8 15 chr12 109165762 109165896 -35116593 + FLAM_C SINE Alu 1 133 0 1500 112 197 8 chr12 109166077 109166326 -35116163 - AluSg1 SINE Alu -8 301 6 2325 95 0 0 chr12 109166864 109167158 -35115331 + AluSc SINE Alu 1 294 -15 189 0 0 0 chr12 109167335 109167356 -35115133 + (TA)n Simple_repeat Simple_repeat 1 21 0 893 121 0 23 chr12 109167356 109167488 -35115001 - FLAM_C SINE Alu -4 129 1 339 85 0 0 chr12 109168178 109168225 -35114264 + (TG)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr12 109168792 109168813 -35113676 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 109169603 109169625 -35112864 + AT_rich Low_complexity Low_complexity 1 22 0 2171 112 0 16 chr12 109169625 109169937 -35112552 + AluSq SINE Alu 1 307 -6 2256 74 3 0 chr12 109169938 109170221 -35112268 + AluSx SINE Alu 1 284 -28 2291 94 7 0 chr12 109171184 109171483 -35111006 + AluSx SINE Alu 1 301 -11 353 244 0 34 chr12 109171937 109172056 -35110433 - L1ME4a LINE L1 -57 6064 5950 21 0 0 0 chr12 109172064 109172085 -35110404 + AT_rich Low_complexity Low_complexity 1 21 0 1718 129 31 80 chr12 109172150 109172475 -35110014 - AluJb SINE Alu -3 309 1 306 214 83 12 chr12 109172758 109172842 -35109647 + MIR SINE MIR 172 261 -1 198 346 84 19 chr12 109172876 109172983 -35109506 + L2 LINE L2 2838 2951 -362 807 153 0 0 chr12 109173438 109173556 -35108933 + FLAM_C SINE Alu 1 118 -15 183 331 91 33 chr12 109173611 109173732 -35108757 - L2 LINE L2 -313 2959 2832 292 211 13 13 chr12 109173759 109173835 -35108654 - MIR SINE MIR -1 261 186 263 279 240 6 chr12 109174336 109174519 -35107970 + MIR SINE MIR 12 237 -25 441 286 106 24 chr12 109174764 109175093 -35107396 - L1M4 LINE L1 -2237 3909 3554 1654 176 17 10 chr12 109175193 109175495 -35106994 + AluJb SINE Alu 2 305 -7 395 290 179 19 chr12 109175665 109175872 -35106617 - MIR SINE MIR -7 255 16 376 280 7 73 chr12 109175893 109176043 -35106446 + MIR3 SINE MIR 20 159 -49 1291 219 20 39 chr12 109176141 109176497 -35105992 + MLT1A1 LTR MaLR 17 365 0 2047 115 11 4 chr12 109177235 109177514 -35104975 + AluSx SINE Alu 1 281 -31 214 65 0 0 chr12 109177514 109177545 -35104944 + (CAA)n Simple_repeat Simple_repeat 1 180 0 863 234 48 19 chr12 109177552 109177761 -35104728 + MER58C DNA MER1_type 1 215 0 192 278 311 0 chr12 109181714 109181865 -35100624 + L2 LINE L2 2219 2416 -898 459 351 101 18 chr12 109182651 109182987 -35099502 + L2 LINE L2 2907 3270 -2 299 289 213 0 chr12 109183083 109183255 -35099234 + MIR SINE MIR 30 248 -14 330 267 167 33 chr12 109183315 109183495 -35098994 + MIR SINE MIR 27 230 -32 1960 127 0 4 chr12 109183625 109183901 -35098588 + AluSx SINE Alu 1 275 -37 216 0 0 0 chr12 109183905 109183929 -35098560 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 2316 104 3 3 chr12 109184454 109184761 -35097728 + AluSq SINE Alu 1 307 -6 1563 145 4 0 chr12 109185351 109185579 -35096910 + AluSx SINE Alu 1 229 -83 2003 127 10 29 chr12 109185628 109185935 -35096554 + AluSx SINE Alu 1 301 -11 880 226 121 51 chr12 109186228 109186714 -35095775 + L1MC5 LINE L1 7299 7818 -143 312 240 80 90 chr12 109186854 109187054 -35095435 + L1MC4 LINE L1 7600 7797 -245 180 250 0 0 chr12 109187556 109187592 -35094897 - L2 LINE L2 -303 2969 2934 897 206 7 0 chr12 109187909 109188064 -35094425 + AluJb SINE Alu 134 289 -23 25 0 0 0 chr12 109188664 109188689 -35093800 + AT_rich Low_complexity Low_complexity 1 25 0 2425 93 0 0 chr12 109189521 109189822 -35092667 - AluSx SINE Alu -11 301 1 999 110 0 7 chr12 109189822 109189958 -35092531 - AluSq/x SINE Alu -178 135 1 236 261 65 11 chr12 109190339 109190431 -35092058 - L1ME4a LINE L1 -6 6115 6019 2544 60 0 0 chr12 109190566 109190866 -35091623 + AluY SINE Alu 2 301 -10 324 266 80 0 chr12 109190982 109191095 -35091394 + HsTC2 DNA Tc2 5 126 -1772 2190 103 30 3 chr12 109192255 109192555 -35089934 - AluSx SINE Alu -4 308 1 434 291 146 53 chr12 109193751 109194053 -35088436 + L1ME4a LINE L1 5409 5738 -2070 180 0 0 0 chr12 109194095 109194115 -35088374 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 327 253 59 54 chr12 109194211 109194397 -35088092 + L1ME4a LINE L1 5935 6121 0 2271 115 0 3 chr12 109194422 109194735 -35087754 + AluSx SINE Alu 1 312 0 425 308 40 55 chr12 109194939 109195192 -35087297 + L2 LINE L2 2977 3225 -47 344 271 20 121 chr12 109195421 109195620 -35086869 + MIR SINE MIR 83 261 -1 621 178 30 0 chr12 109196892 109196993 -35085496 - U6 snRNA snRNA -3 104 1 225 0 0 0 chr12 109197349 109197374 -35085115 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 2359 99 0 0 chr12 109197839 109198142 -35084347 + AluSq SINE Alu 1 303 -10 1686 188 21 0 chr12 109199112 109199399 -35083090 - AluJo SINE Alu -18 294 2 187 297 250 8 chr12 109200241 109200369 -35082120 + L2 LINE L2 2926 3084 -188 1478 169 3 111 chr12 109201082 109201414 -35081075 - AluJb SINE Alu -6 296 1 205 270 14 27 chr12 109201739 109201813 -35080676 + GA-rich Low_complexity Low_complexity 3 75 0 2249 99 3 0 chr12 109202725 109203027 -35079462 - AluSx SINE Alu -9 303 1 294 208 130 13 chr12 109203208 109203285 -35079204 - Charlie8 DNA MER1_type -2247 170 85 217 301 48 29 chr12 109203996 109204099 -35078390 + L2 LINE L2 3156 3260 -12 2026 119 24 10 chr12 109204300 109204594 -35077895 - AluSg SINE Alu -12 298 1 26 30 0 0 chr12 109205387 109205420 -35077069 + AT_rich Low_complexity Low_complexity 1 33 0 513 228 8 24 chr12 109205454 109205577 -35076912 + MLT1I LTR MaLR 289 409 0 446 231 10 0 chr12 109206501 109206605 -35075884 + MER20 DNA MER1_type 110 214 -5 2341 95 0 16 chr12 109206840 109207146 -35075343 - AluSc SINE Alu -8 301 1 288 328 84 25 chr12 109208862 109209100 -35073389 + L2 LINE L2 2811 3062 -210 2160 100 10 0 chr12 109210108 109210399 -35072090 + AluSx SINE Alu 1 294 -18 357 238 60 0 chr12 109211213 109211297 -35071192 + L2 LINE L2 3199 3287 -26 773 44 0 0 chr12 109211297 109211388 -35071101 + 5S rRNA rRNA 1 91 -30 1779 151 35 11 chr12 109212871 109212984 -35069505 + AluJb SINE Alu 5 114 -198 181 0 69 0 chr12 109212984 109213013 -35069476 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1779 151 35 11 chr12 109213013 109213183 -35069306 + AluJb SINE Alu 114 295 -17 909 324 85 31 chr12 109213349 109213923 -35068566 + L3 LINE CR1 426 1030 -547 1707 260 66 22 chr12 109213927 109214725 -35067764 + L2 LINE L2 2477 3304 -9 241 372 109 0 chr12 109214879 109215016 -35067473 + L3 LINE CR1 1277 1428 -149 1929 152 7 10 chr12 109215204 109215501 -35066988 - AluJb SINE Alu -16 296 1 1066 204 111 28 chr12 109216539 109216712 -35065777 - MLT1A1 LTR MaLR -49 316 108 1347 152 87 73 chr12 109216712 109217001 -35065488 - AluJo SINE Alu -19 293 1 1066 204 111 28 chr12 109217001 109217116 -35065373 - MLT1A1 LTR MaLR -257 108 4 332 259 78 27 chr12 109218209 109218509 -35063980 + L1P5 LINE L1 5269 5451 -700 405 269 69 87 chr12 109218545 109218891 -35063598 + L1ME4a LINE L1 5583 5922 -199 31 76 0 0 chr12 109219007 109219073 -35063416 + AT_rich Low_complexity Low_complexity 1 66 0 2524 60 7 0 chr12 109219116 109219414 -35063075 + AluSp SINE Alu 1 300 -13 2056 156 3 0 chr12 109220959 109221267 -35061222 - AluJb SINE Alu -3 309 1 581 172 30 0 chr12 109221298 109221397 -35061092 + U13 snRNA snRNA 1 102 -2 1733 134 95 18 chr12 109221973 109222257 -35060232 + AluJo SINE Alu 7 312 0 533 258 67 49 chr12 109222335 109222560 -35059929 + L2 LINE L2 3075 3303 -10 211 359 29 0 chr12 109222676 109222779 -35059710 + L2 LINE L2 2921 3026 -246 1540 86 43 56 chr12 109222844 109223076 -35059413 + MER30 DNA MER1_type 1 229 -1 1736 228 40 38 chr12 109223348 109223848 -35058641 - L2 LINE L2 -1 3312 2812 191 225 0 0 chr12 109224042 109224082 -35058407 + L2 LINE L2 2935 2974 -340 455 200 0 0 chr12 109224421 109224496 -35057993 - MER5A DNA MER1_type -114 75 1 398 303 33 16 chr12 109224522 109224644 -35057845 + L2 LINE L2 3179 3302 -11 31 26 0 0 chr12 109224891 109224929 -35057560 + AT_rich Low_complexity Low_complexity 1 38 0 2076 110 3 3 chr12 109225309 109225626 -35056863 - AluSx SINE Alu 0 317 1 213 243 216 0 chr12 109225691 109225765 -35056724 - MIR3 SINE MIR -51 157 68 896 159 0 15 chr12 109225850 109225982 -35056507 + FLAM_C SINE Alu 1 130 -3 856 167 0 0 chr12 109226268 109226394 -35056095 + FLAM_C SINE Alu 1 126 -17 35 24 0 0 chr12 109226394 109226436 -35056053 + AT_rich Low_complexity Low_complexity 1 42 0 592 250 99 6 chr12 109226612 109226784 -35055705 + MER5A DNA MER1_type 1 188 -1 572 179 170 45 chr12 109226793 109226954 -35055535 - Charlie1 DNA MER1_type -1 2760 2560 2114 114 7 0 chr12 109226954 109227275 -35055214 + AluSx SINE Alu 1 323 0 572 179 170 45 chr12 109227275 109227334 -35055155 - Charlie1 DNA MER1_type -201 2560 2510 653 110 0 158 chr12 109227893 109228020 -35054469 - U6 snRNA snRNA 0 107 1 215 327 164 0 chr12 109228478 109228637 -35053852 - L2 LINE L2 -215 3057 2873 2194 98 7 3 chr12 109228826 109229121 -35053368 + AluSx SINE Alu 1 296 -16 381 312 251 8 chr12 109229180 109229777 -35052712 + L2 LINE L2 1372 2113 -1201 426 212 145 21 chr12 109229819 109230012 -35052477 - MLT1J LTR MaLR -152 359 143 * 8181 134 58 29 chr12 109230006 109231456 -35051033 + Tigger2 DNA MER2_type 233 1724 -994 315 231 9 93 chr12 109231519 109231627 -35050862 + MER65-int LTR ERV1 645 743 -4128 797 153 0 0 chr12 109231686 109231804 -35050685 + FLAM_C SINE Alu 1 118 -15 35 0 0 0 chr12 109231813 109231848 -35050641 + AT_rich Low_complexity Low_complexity 1 35 0 2096 119 0 58 chr12 109231960 109232287 -35050202 + AluSx SINE Alu 1 308 -4 2075 132 7 0 chr12 109232439 109232743 -35049746 + AluJb SINE Alu 5 310 -2 1984 153 10 3 chr12 109232743 109233051 -35049438 + AluJb SINE Alu 1 310 -2 731 197 0 15 chr12 109233246 109233378 -35049111 + FLAM_C SINE Alu 3 132 -1 1501 171 12 47 chr12 109233390 109233745 -35048744 + AluJo SINE Alu 1 344 0 265 183 0 17 chr12 109234498 109234558 -35047931 + L1MB4 LINE L1 5840 5898 -461 391 182 273 0 chr12 109234569 109234668 -35047821 + MER39 LTR ERV1 7 132 -575 1397 155 104 36 chr12 109235438 109235716 -35046773 + AluJo SINE Alu 6 302 -10 186 302 94 19 chr12 109235930 109236036 -35046453 - L3 LINE CR1 -3 1574 1461 562 257 84 6 chr12 109236045 109236224 -35046265 - MER3 DNA MER1_type 0 209 17 216 243 135 36 chr12 109236307 109236418 -35046071 + MIR SINE MIR 77 198 -64 1693 160 3 27 chr12 109236873 109237166 -35045323 - AluJb SINE Alu -14 298 13 473 227 81 88 chr12 109237214 109237522 -35044967 + L1ME4a LINE L1 5548 5853 -268 283 266 96 11 chr12 109237544 109237638 -35044851 - L2 LINE L2 -33 3280 3179 1427 194 24 7 chr12 109237777 109238071 -35044418 + L1MB4 LINE L1 5878 6176 -4 3796 225 13 48 chr12 109238110 109239132 -35043357 + L1MC2 LINE L1 3332 4317 -1829 278 155 20 2 chr12 109239132 109239386 -35043103 + AluSx SINE Alu 1 301 0 944 224 30 89 chr12 109239386 109239756 -35042733 + L1MC2 LINE L1 4302 4649 -1497 1597 180 60 0 chr12 109239760 109240044 -35042445 + AluJb SINE Alu 1 301 -11 5641 155 42 36 chr12 109240049 109240148 -35042341 + L1MC2 LINE L1 5066 5163 -1181 2273 96 3 7 chr12 109240148 109240439 -35042050 + AluSp SINE Alu 1 290 -23 5641 155 42 36 chr12 109240439 109241480 -35041009 + L1MC2 LINE L1 5163 6213 -131 1259 186 124 4 chr12 109241480 109241754 -35040735 + AluJo SINE Alu 1 307 -5 5641 155 42 36 chr12 109241754 109241879 -35040610 + L1MC2 LINE L1 6213 6336 -8 402 21 0 0 chr12 109241880 109241906 -35040583 + (CA)n Simple_repeat Simple_repeat 1 73 0 402 21 0 0 chr12 109241906 109241953 -35040536 + (CA)n Simple_repeat Simple_repeat 2 48 0 586 271 79 62 chr12 109242042 109242445 -35040044 - L2 LINE L2 -12 3301 2892 377 160 47 127 chr12 109242445 109242595 -35039894 + MLT1H LTR MaLR 172 309 -240 976 255 5 0 chr12 109242664 109242864 -35039625 - MER58B DNA MER1_type 0 341 141 1257 126 103 27 chr12 109242899 109243122 -35039367 - MSTA LTR MaLR 0 428 189 2255 93 0 0 chr12 109243122 109243402 -35039087 - AluSx SINE Alu -12 300 21 1957 132 24 14 chr12 109243507 109243795 -35038694 + AluSx SINE Alu 1 291 -21 863 120 171 0 chr12 109243806 109243964 -35038525 - MSTA LTR MaLR -243 185 1 554 81 15 184 chr12 109243964 109244011 -35038478 - U5 snRNA snRNA -3 113 60 1885 153 7 17 chr12 109244011 109244312 -35038177 + AluJb SINE Alu 1 298 -14 554 81 15 184 chr12 109244312 109244340 -35038149 - U5 snRNA snRNA -56 60 67 1709 154 3 88 chr12 109244340 109244670 -35037819 - AluJb SINE Alu -10 302 1 554 81 15 184 chr12 109244670 109244729 -35037760 - U5 snRNA snRNA -48 68 1 348 211 125 19 chr12 109244729 109244833 -35037656 - MER58B DNA MER1_type -184 157 43 277 312 0 0 chr12 109245023 109245100 -35037389 - L2 LINE L2 -590 2724 2648 1994 164 81 47 chr12 109245194 109245255 -35037234 - Charlie1b DNA MER1_type -2238 523 466 1736 162 3 30 chr12 109245255 109245336 -35037153 + AluJb SINE Alu 1 83 -229 2498 75 0 0 chr12 109245336 109245629 -35036860 + AluSg SINE Alu 1 293 -17 1736 162 3 30 chr12 109245629 109245849 -35036640 + AluJb SINE Alu 83 294 -18 1994 164 81 47 chr12 109245849 109245952 -35036537 - Charlie1b DNA MER1_type -2295 466 368 2137 119 3 3 chr12 109245952 109246247 -35036242 + AluSx SINE Alu 1 295 -17 1994 164 81 47 chr12 109246247 109246587 -35035902 - Charlie1b DNA MER1_type -2393 368 1 1572 152 108 4 chr12 109246607 109246876 -35035613 - AluJb SINE Alu -15 297 1 1023 198 12 0 chr12 109247003 109247175 -35035314 + FAM SINE Alu 1 174 -1 6129 137 18 23 chr12 109247259 109248803 -35033686 + L1MA4 LINE L1 4670 6212 -88 2047 139 10 3 chr12 109248803 109249105 -35033384 - AluJo SINE Alu -8 304 1 6129 137 18 23 chr12 109249105 109249193 -35033296 + L1MA4 LINE L1 6212 6299 -1 768 158 8 0 chr12 109249226 109249353 -35033136 + FLAM_A SINE Alu 10 137 -5 194 372 37 28 chr12 109249399 109249617 -35032872 + L2 LINE L2 2635 2854 -460 187 351 0 0 chr12 109249835 109249892 -35032597 + L2 LINE L2 3122 3178 -94 2247 120 3 0 chr12 109249914 109250214 -35032275 - AluSx SINE Alu -11 301 1 2515 123 3 27 chr12 109250248 109250547 -35031942 + THE1B LTR MaLR 1 291 -73 2310 113 0 0 chr12 109250547 109250849 -35031640 - AluSq SINE Alu -11 302 1 2515 123 3 27 chr12 109250849 109250922 -35031567 + THE1B LTR MaLR 291 364 0 255 296 12 25 chr12 109251788 109251869 -35030620 + L2 LINE L2 3157 3236 -36 1188 121 87 39 chr12 109252011 109252218 -35030271 - MER20 DNA MER1_type -2 217 1 2267 105 3 3 chr12 109252313 109252617 -35029872 + AluSx SINE Alu 1 304 -8 393 229 9 28 chr12 109252747 109252856 -35029633 + L2 LINE L2 3188 3294 -19 2450 25 7 4 chr12 109253669 109253976 -35028513 + AluY SINE Alu 1 308 0 260 245 133 10 chr12 109254540 109254638 -35027851 + MLT1L LTR MaLR 143 252 -363 2371 106 0 0 chr12 109254865 109255167 -35027322 + AluSx SINE Alu 1 302 -10 860 258 127 90 chr12 109255541 109255942 -35026547 + MLT1K LTR MaLR 37 422 -166 252 0 0 0 chr12 109255942 109255970 -35026519 + (TA)n Simple_repeat Simple_repeat 2 29 0 860 258 127 90 chr12 109255970 109255983 -35026506 + MLT1K LTR MaLR 422 433 -155 2013 107 63 27 chr12 109255983 109256282 -35026207 - AluSg SINE Alu 0 310 1 860 258 127 90 chr12 109256282 109256378 -35026111 + MLT1K LTR MaLR 433 567 -21 411 236 45 18 chr12 109257033 109257143 -35025346 - L2 LINE L2 0 3313 3201 233 204 20 0 chr12 109257877 109257926 -35024563 + (CA)n Simple_repeat Simple_repeat 2 51 0 274 281 0 0 chr12 109257927 109257991 -35024498 + MER46C DNA MER2_type 3 66 -272 244 219 0 0 chr12 109257993 109258057 -35024432 + T-rich Low_complexity Low_complexity 1 64 0 314 130 101 0 chr12 109258126 109258195 -35024294 + MER46C DNA MER2_type 81 156 -182 1606 130 52 45 chr12 109258487 109258659 -35023830 - AluJo SINE Alu -2 310 134 1682 144 104 0 chr12 109258659 109258937 -35023552 - AluJb SINE Alu -5 307 1 1606 130 52 45 chr12 109258937 109259072 -35023417 - AluJo SINE Alu -178 134 1 2063 130 10 7 chr12 109259219 109259519 -35022970 + AluSq SINE Alu 1 301 -12 512 261 76 0 chr12 109259705 109259862 -35022627 - MIR SINE MIR -12 250 82 1988 98 18 98 chr12 109259920 109260247 -35022242 + AluSg SINE Alu 1 301 -9 748 221 99 22 chr12 109260247 109260469 -35022020 + MIR SINE MIR 24 262 0 2266 124 0 0 chr12 109260739 109261038 -35021451 + AluSx SINE Alu 1 299 -13 320 259 84 23 chr12 109261338 109261469 -35021020 - L2 LINE L2 0 3272 3134 246 62 0 0 chr12 109261541 109261573 -35020916 + (A)n Simple_repeat Simple_repeat 1 32 0 775 134 0 8 chr12 109261647 109261766 -35020723 + FLAM_C SINE Alu 1 118 -15 852 123 0 0 chr12 109261879 109262009 -35020480 + FLAM_C SINE Alu 1 130 -3 216 0 0 0 chr12 109262250 109262274 -35020215 + (CCG)n Simple_repeat Simple_repeat 2 25 0 28 113 0 0 chr12 109262376 109262509 -35019980 + GC_rich Low_complexity Low_complexity 1 133 0 289 331 115 0 chr12 109262860 109262990 -35019499 - L2 LINE L2 0 3272 3128 350 229 60 0 chr12 109263180 109263263 -35019226 - MARNA DNA Mariner -99 487 400 622 253 186 0 chr12 109263572 109263766 -35018723 - MIR SINE MIR -1 261 32 669 124 41 124 chr12 109263854 109263999 -35018490 + FLAM_C SINE Alu 1 133 0 614 154 0 174 chr12 109264020 109264072 -35018417 + MER96B DNA MER1_type? 252 311 -106 2308 114 0 9 chr12 109264072 109264387 -35018102 - AluSx SINE Alu 0 312 1 614 154 0 174 chr12 109264387 109264419 -35018070 + MER96B DNA MER1_type? 311 347 -70 2441 83 3 0 chr12 109264419 109264720 -35017769 + AluSp SINE Alu 1 302 -11 614 154 0 174 chr12 109264720 109264835 -35017654 + MER96B DNA MER1_type? 347 417 0 188 292 90 0 chr12 109265060 109265149 -35017340 + MIR SINE MIR 153 249 -13 759 133 100 0 chr12 109265273 109265393 -35017096 - FLAM_C SINE Alu -10 133 2 299 264 80 27 chr12 109265993 109266219 -35016270 - L2 LINE L2 -80 3192 2917 513 121 204 89 chr12 109266431 109266565 -35015924 - MER53 DNA DNA 0 189 33 2265 120 0 3 chr12 109266565 109266873 -35015616 - AluSq SINE Alu -6 307 1 513 121 204 89 chr12 109266873 109266895 -35015594 - MER53 DNA DNA -156 33 15 1795 191 3 28 chr12 109267567 109267922 -35014567 + L1PB4 LINE L1 5807 6152 -4 2255 125 0 0 chr12 109268018 109268330 -35014159 - AluSx SINE Alu 0 312 1 640 110 0 22 chr12 109268354 109268445 -35014044 + 5S rRNA rRNA 2 90 -31 2219 134 3 0 chr12 109268557 109268862 -35013627 - AluSx SINE Alu -6 306 1 350 353 6 6 chr12 109268890 109269046 -35013443 + L2 LINE L2 3158 3313 0 2026 141 0 0 chr12 109269083 109269367 -35013122 + AluSx SINE Alu 11 294 -18 1950 154 7 0 chr12 109269629 109269922 -35012567 - AluJb SINE Alu -17 295 1 1764 154 0 24 chr12 109269995 109270293 -35012196 + AluSx SINE Alu 22 312 0 330 308 28 20 chr12 109270316 109270563 -35011926 - L1M4 LINE L1 -2936 3210 2962 1613 166 0 51 chr12 109270828 109271142 -35011347 + AluJo SINE Alu 6 303 -9 886 129 0 15 chr12 109271175 109271307 -35011182 + FLAM_C SINE Alu 3 132 -1 231 146 98 0 chr12 109271318 109271359 -35011130 + MER66B LTR ERV1 302 346 -140 22 0 0 0 chr12 109271374 109271396 -35011093 + AT_rich Low_complexity Low_complexity 1 22 0 612 219 25 25 chr12 109271453 109271613 -35010876 - LTR41 LTR ERVL -613 160 1 305 257 35 44 chr12 109272044 109272157 -35010332 - L1M4 LINE L1 -3349 2797 2686 1456 190 35 28 chr12 109272177 109272298 -35010191 + AluJo SINE Alu 13 132 -646 2257 96 0 17 chr12 109272298 109272599 -35009890 + AluSx SINE Alu 1 296 -16 1456 190 35 28 chr12 109272599 109272918 -35009571 + AluJo SINE Alu 132 447 -331 2471 84 0 3 chr12 109272918 109273229 -35009260 + AluY SINE Alu 1 310 -1 1456 190 35 28 chr12 109273229 109273241 -35009248 + AluJo SINE Alu 447 778 0 186 43 0 0 chr12 109273510 109273533 -35008956 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1970 131 10 13 chr12 109274502 109274800 -35007689 + AluSg SINE Alu 1 297 -13 237 65 0 0 chr12 109274800 109274831 -35007658 + (CA)n Simple_repeat Simple_repeat 2 32 0 1826 150 13 45 chr12 109274859 109275173 -35007316 + AluJb SINE Alu 1 304 -8 286 171 53 26 chr12 109275200 109275276 -35007213 - L1M4 LINE L1 -762 5384 5307 181 367 39 0 chr12 109275366 109275494 -35006995 + L2 LINE L2 1917 2049 -1265 1110 141 0 32 chr12 109275647 109275832 -35006657 + AluSg/x SINE Alu 133 311 -1 281 239 230 18 chr12 109275996 109276109 -35006380 - LTR33A LTR ERVL -381 142 6 2173 112 7 3 chr12 109276164 109276458 -35006031 - AluSx SINE Alu -17 295 1 1683 164 26 23 chr12 109277147 109277452 -35005037 - AluJo SINE Alu 0 312 7 604 161 100 77 chr12 109277464 109277594 -35004895 - FLAM_C SINE Alu 0 133 1 2110 114 0 0 chr12 109277610 109277882 -35004607 - AluSx SINE Alu -40 272 1 721 121 0 141 chr12 109278145 109278187 -35004302 + AluJo/FLAM SINE Alu 1 47 -255 2575 60 0 0 chr12 109278187 109278488 -35004001 + AluY SINE Alu 1 301 -10 721 121 0 141 chr12 109278488 109278594 -35003895 + AluJo/FLAM SINE Alu 47 128 -174 278 309 52 7 chr12 109278912 109279048 -35003441 + MER20B DNA MER1_type 37 178 -605 278 50 25 0 chr12 109279137 109279177 -35003312 + (CA)n Simple_repeat Simple_repeat 2 42 0 335 240 15 128 chr12 109279183 109279387 -35003102 - L1MC4 LINE L1 -26 8016 7836 2075 86 3 98 chr12 109279406 109279732 -35002757 + AluSp SINE Alu 1 295 -18 1931 149 0 3 chr12 109279742 109280038 -35002451 - AluSx SINE Alu -17 295 1 411 248 16 70 chr12 109280100 109280229 -35002260 - L2 LINE L2 -6 3307 3186 21 0 0 0 chr12 109280281 109280302 -35002187 + AT_rich Low_complexity Low_complexity 1 21 0 910 284 52 8 chr12 109280306 109280556 -35001933 - MIR SINE MIR -1 261 1 492 290 68 32 chr12 109280571 109280665 -35001824 - L1MC4a LINE L1 -302 5819 5730 2035 130 0 0 chr12 109280665 109280965 -35001524 - AluSx SINE Alu -12 300 1 492 290 68 32 chr12 109280965 109281173 -35001316 - L1MC4a LINE L1 -391 5730 5541 1750 189 0 0 chr12 109281202 109281508 -35000981 + AluJb SINE Alu 1 306 -6 1022 254 78 68 chr12 109281607 109282020 -35000469 - L2 LINE L2 0 3313 2897 1491 190 76 30 chr12 109282243 109282611 -34999878 - L1ME1 LINE L1 -5 6161 5781 1906 135 0 0 chr12 109282611 109282885 -34999604 - MER66B LTR ERV1 0 486 213 284 189 0 0 chr12 109282881 109282934 -34999555 - Alu SINE Alu 0 300 248 * 1061 78 32 13 chr12 109282934 109283088 -34999401 + AluYa5 SINE Alu 141 297 -14 2223 112 0 0 chr12 109283329 109283641 -34998848 + AluSx SINE Alu 1 312 0 1329 199 43 10 chr12 109283699 109283876 -34998613 - AluJb SINE Alu -1 311 118 288 70 0 0 chr12 109283876 109283919 -34998570 + (TG)n Simple_repeat Simple_repeat 2 44 0 1329 199 43 10 chr12 109283919 109284042 -34998447 - AluJb SINE Alu -194 118 1 1186 260 24 7 chr12 109284128 109284420 -34998069 - HERV16 LTR ERVL -3002 1994 1698 390 230 10 50 chr12 109284421 109284521 -34997968 + L2 LINE L2 3218 3313 0 622 200 45 31 chr12 109284688 109284848 -34997641 + MIR SINE MIR 84 247 -15 1828 144 10 19 chr12 109284869 109285044 -34997445 - AluSx SINE Alu -2 310 138 2196 92 0 7 chr12 109285044 109285350 -34997139 - AluSq SINE Alu -9 304 1 1828 144 10 19 chr12 109285350 109285486 -34997003 - AluSx SINE Alu -174 138 2 2231 122 40 6 chr12 109285972 109286324 -34996165 - THE1B LTR MaLR 0 364 1 3168 113 89 0 chr12 109286720 109287180 -34995309 - MER61D LTR ERV1 0 501 1 2432 125 19 21 chr12 109287575 109287951 -34994538 + THE1C LTR MaLR 1 375 0 1959 138 3 6 chr12 109288179 109288491 -34993998 - AluSx SINE Alu -1 311 1 366 268 82 55 chr12 109288521 109288704 -34993785 + MIR3 SINE MIR 14 201 -7 336 315 202 37 chr12 109289288 109289471 -34993018 + L2 LINE L2 2237 2389 -925 1677 168 7 10 chr12 109289471 109289769 -34992720 - AluSx SINE Alu -13 299 3 336 315 202 37 chr12 109289769 109290150 -34992339 + L2 LINE L2 2389 2894 -420 23 0 0 0 chr12 109290317 109290340 -34992149 + AT_rich Low_complexity Low_complexity 1 23 0 1985 125 0 0 chr12 109290344 109290631 -34991858 - AluSx SINE Alu -24 288 2 1848 144 0 0 chr12 109290807 109291128 -34991361 + AluSx SINE Alu 1 321 0 260 330 124 52 chr12 109291807 109292040 -34990449 - L2 LINE L2 -9 3263 3014 454 260 142 12 chr12 109292044 109292213 -34990276 - L2 LINE L2 -4 3309 3119 604 214 0 30 chr12 109292877 109293008 -34989481 + FLAM_C SINE Alu 4 130 -13 318 132 0 0 chr12 109293041 109293094 -34989395 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 3333 130 9 0 chr12 109293306 109293769 -34988720 + MER1A DNA MER1_type 3 469 -60 1649 150 41 3 chr12 109293768 109294061 -34988428 - LTR23 LTR ERV1 -133 304 1 * 2150 111 0 0 chr12 109294227 109294525 -34987964 + AluSg SINE Alu 1 298 -12 309 305 0 12 chr12 109294590 109294672 -34987817 - LTR28 LTR ERV1 -40 980 900 913 258 120 19 chr12 109294725 109295151 -34987338 - LTR1B LTR ERV1 -310 516 48 280 250 0 0 chr12 109295185 109295245 -34987244 + MLT1A1 LTR MaLR 1 60 -314 2139 132 0 0 chr12 109295248 109295558 -34986931 + AluSx SINE Alu 1 310 -2 1224 196 61 51 chr12 109295587 109295899 -34986590 + MLT1A1 LTR MaLR 51 365 0 1026 168 98 23 chr12 109295930 109296186 -34986303 - AluJo SINE Alu -18 294 20 667 162 0 0 chr12 109296186 109296285 -34986204 + AluSq/x SINE Alu 10 108 -204 1246 172 34 0 chr12 109296285 109296494 -34985995 + AluSx SINE Alu 64 279 -33 405 0 0 0 chr12 109296497 109296542 -34985947 + (CA)n Simple_repeat Simple_repeat 2 46 0 2649 96 75 0 chr12 109296554 109296928 -34985561 - HUERS-P1 LTR ERV1 -5480 783 382 1161 123 29 0 chr12 109296929 109297100 -34985389 - HUERS-P1 LTR ERV1 -6087 176 1 2636 93 5 73 chr12 109297100 109297276 -34985213 - LTR8 LTR ERV1 0 691 505 2168 98 7 0 chr12 109297276 109297572 -34984917 - AluSq SINE Alu -14 299 2 2636 93 5 73 chr12 109297572 109297804 -34984685 - LTR8 LTR ERV1 -186 505 311 1526 203 101 134 chr12 109297812 109298779 -34983710 + LTR28 LTR ERV1 1 1020 0 * 1862 95 64 109 chr12 109298779 109298965 -34983524 - LTR8 LTR ERV1 -372 319 154 2210 119 0 0 chr12 109298965 109299275 -34983214 - AluSx SINE Alu -2 310 1 1862 95 64 109 chr12 109299275 109299423 -34983066 - LTR8 LTR ERV1 -537 154 1 490 194 28 0 chr12 109299423 109299531 -34982958 - L1MD3 LINE L1 -518 7477 7367 1220 188 4 16 chr12 109299539 109299784 -34982705 - AluJb SINE Alu 0 312 71 2268 93 0 0 chr12 109299832 109300133 -34982356 + AluSx SINE Alu 1 301 -11 2027 133 7 0 chr12 109300226 109300526 -34981963 + AluSx SINE Alu 1 302 -10 2270 74 3 3 chr12 109300526 109300823 -34981666 + AluSg SINE Alu 1 297 -13 6572 108 42 30 chr12 109300823 109301087 -34981402 + Tigger1 DNA MER2_type 1171 1430 -988 1679 172 27 7 chr12 109301087 109301384 -34981105 - AluJb SINE Alu -9 303 1 6572 108 42 30 chr12 109301384 109301740 -34980749 + Tigger1 DNA MER2_type 1430 1780 -638 2208 113 0 0 chr12 109301740 109302040 -34980449 - AluSx SINE Alu -12 300 1 6572 108 42 30 chr12 109302040 109302160 -34980329 + Tigger1 DNA MER2_type 1780 1897 -521 2492 47 0 0 chr12 109302160 109302461 -34980028 + AluY SINE Alu 1 301 -10 6572 108 42 30 chr12 109302461 109302769 -34979720 + Tigger1 DNA MER2_type 1897 2234 -184 815 161 0 7 chr12 109302777 109302920 -34979569 - FLAM_C SINE Alu -1 142 1 2238 103 0 0 chr12 109302931 109303231 -34979258 - AluSg SINE Alu -10 300 1 28 29 0 0 chr12 109303238 109303273 -34979216 + AT_rich Low_complexity Low_complexity 1 35 0 487 67 0 0 chr12 109303276 109303336 -34979153 - U6 snRNA snRNA -47 60 1 1852 164 6 3 chr12 109303347 109303658 -34978831 - AluJb SINE Alu 0 312 1 668 142 0 24 chr12 109303659 109303786 -34978703 + Tigger1 DNA MER2_type 2225 2348 -70 2279 103 12 9 chr12 109303786 109304107 -34978382 + LTR8 LTR ERV1 1 322 -369 1806 126 3 11 chr12 109304111 109304429 -34978060 + AluSx SINE Alu 1 316 0 1083 139 12 0 chr12 109304429 109304602 -34977887 + AluSg/x SINE Alu 133 307 -5 2335 64 0 3 chr12 109305250 109305545 -34976944 - AluSq SINE Alu -19 294 1 2351 59 0 13 chr12 109305550 109305857 -34976632 - AluY SINE Alu -8 303 1 1862 137 0 16 chr12 109306125 109306438 -34976051 - AluSg SINE Alu -2 308 1 1944 109 0 7 chr12 109306439 109306713 -34975776 - AluSx SINE Alu -17 295 24 1299 167 134 40 chr12 109306726 109307002 -34975487 - AluJo SINE Alu 0 302 1 2124 115 0 13 chr12 109307464 109307776 -34974713 - AluSx SINE Alu -4 308 1 1211 201 38 14 chr12 109308091 109308380 -34974109 - AluJb SINE Alu 0 312 17 195 69 0 0 chr12 109310406 109310435 -34972054 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2120 97 0 23 chr12 109310506 109310805 -34971684 - AluSx SINE Alu -8 304 13 855 150 8 0 chr12 109310967 109311100 -34971389 - AluJo SINE Alu -178 134 1 2284 72 10 0 chr12 109311233 109311525 -34970964 + AluSc SINE Alu 1 295 -14 887 168 5 69 chr12 109311559 109311784 -34970705 - AluJo SINE Alu 0 308 97 2327 87 3 7 chr12 109311798 109312108 -34970381 - AluSx SINE Alu -3 309 1 1201 139 0 5 chr12 109312627 109312814 -34969675 + AluSg/x SINE Alu 112 297 -15 697 218 0 0 chr12 109312880 109313013 -34969476 - FLAM_A SINE Alu 0 133 1 862 235 46 109 chr12 109313021 109313433 -34969056 + L2 LINE L2 2829 3214 -99 2473 26 33 7 chr12 109313627 109313929 -34968560 - AluY SINE Alu -1 310 1 1326 265 58 60 chr12 109314085 109314707 -34967782 + L1MC4a LINE L1 5362 5982 -1826 2262 67 10 7 chr12 109314834 109315132 -34967357 - AluSq SINE Alu -13 300 2 2224 96 3 13 chr12 109315171 109315483 -34967006 + AluSc SINE Alu 1 309 0 1505 158 67 7 chr12 109315628 109315912 -34966577 + AluJb SINE Alu 4 304 -8 1888 89 75 4 chr12 109316454 109316734 -34965755 - AluSp SINE Alu -13 300 1 2076 109 10 3 chr12 109317046 109317348 -34965141 - AluSx SINE Alu -8 304 1 426 240 132 16 chr12 109317389 109317510 -34964979 + L2 LINE L2 3172 3306 -7 415 267 123 27 chr12 109317749 109317895 -34964594 + MIR SINE MIR 8 167 -95 2131 114 3 0 chr12 109318384 109318682 -34963807 + AluSq SINE Alu 1 299 -14 2082 112 0 26 chr12 109319046 109319359 -34963130 - AluSx SINE Alu -7 305 1 2047 103 3 7 chr12 109319660 109319951 -34962538 - AluSq SINE Alu -23 290 1 1893 143 6 19 chr12 109320307 109320622 -34961867 - AluJb SINE Alu -1 311 1 402 139 63 0 chr12 109320881 109320960 -34961529 + LTR9 LTR ERV1 438 521 -91 201 139 0 0 chr12 109320960 109321003 -34961486 + (GAGAA)n Simple_repeat Simple_repeat 5 47 0 * 435 93 0 35 chr12 109320993 109321079 -34961410 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 203 301 150 60 chr12 109321090 109321177 -34961312 + MIR SINE MIR 48 152 -110 2197 118 0 0 chr12 109321177 109321482 -34961007 + AluSq SINE Alu 1 305 -8 203 301 150 60 chr12 109321482 109321527 -34960962 + MIR SINE MIR 152 192 -70 2185 102 0 10 chr12 109321585 109321899 -34960590 - AluSx SINE Alu -1 311 1 320 229 185 13 chr12 109321958 109322115 -34960374 + L2 LINE L2 2525 2708 -606 2420 53 0 3 chr12 109322269 109322568 -34959921 - AluSc SINE Alu -11 298 1 29 0 0 0 chr12 109322681 109322710 -34959779 + AT_rich Low_complexity Low_complexity 1 29 0 853 167 0 31 chr12 109323048 109323233 -34959256 + AluJb SINE Alu 129 308 0 2433 51 0 0 chr12 109323267 109323562 -34958927 - AluSc SINE Alu -14 295 1 29 0 0 0 chr12 109323675 109323704 -34958785 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 109324503 109324527 -34957962 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr12 109324657 109324685 -34957804 + AT_rich Low_complexity Low_complexity 1 28 0 1986 105 0 69 chr12 109324738 109325072 -34957417 - AluSx SINE Alu -1 311 1 29 28 0 0 chr12 109325226 109325262 -34957227 + AT_rich Low_complexity Low_complexity 1 36 0 342 228 11 11 chr12 109325724 109325816 -34956673 - MER63A DNA MER1_type -2 208 117 447 209 114 9 chr12 109325864 109325969 -34956520 - MER63A DNA MER1_type 0 124 9 684 219 56 28 chr12 109326101 109326279 -34956210 + MIR SINE MIR 78 260 -2 186 43 0 0 chr12 109326362 109326385 -34956104 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chr12 109326428 109326453 -34956036 + AT_rich Low_complexity Low_complexity 1 25 0 1879 132 0 40 chr12 109326453 109326620 -34955869 - AluJb SINE Alu -21 291 140 2143 129 3 0 chr12 109326620 109326930 -34955559 - AluSx SINE Alu -1 311 1 1879 132 0 40 chr12 109326930 109327065 -34955424 - AluJb SINE Alu -172 140 1 1539 176 17 10 chr12 109327292 109327594 -34954895 - AluJb SINE Alu -7 305 2 577 286 106 24 chr12 109327694 109328023 -34954466 + L1M4 LINE L1 3554 3909 -2237 271 293 258 0 chr12 109328253 109328451 -34954038 - MIR SINE MIR -2 260 12 229 311 0 0 chr12 109328679 109328740 -34953749 - MLT1K LTR MaLR -397 191 131 300 211 13 13 chr12 109328952 109329028 -34953461 + MIR SINE MIR 186 261 -1 808 153 0 0 chr12 109329231 109329349 -34953140 - FLAM_C SINE Alu -15 118 1 200 324 83 28 chr12 109329803 109329911 -34952578 - L2 LINE L2 -321 2951 2838 315 214 83 12 chr12 109329945 109330029 -34952460 - MIR SINE MIR -1 261 172 1724 129 31 80 chr12 109330312 109330637 -34951852 + AluJb SINE Alu 1 309 -3 21 0 0 0 chr12 109330702 109330723 -34951766 + AT_rich Low_complexity Low_complexity 1 21 0 395 244 0 34 chr12 109330731 109330850 -34951639 + L1ME4a LINE L1 5950 6064 -57 239 261 63 18 chr12 109330889 109331000 -34951489 - L1ME LINE L1 -593 5571 5456 2320 94 7 0 chr12 109331304 109331603 -34950886 - AluSx SINE Alu -11 301 1 492 166 20 133 chr12 109331616 109331705 -34950784 + Charlie1 DNA MER1_type 2628 2695 -66 1712 166 3 30 chr12 109331705 109331924 -34950565 - AluJb SINE Alu -19 293 83 2408 88 0 0 chr12 109331924 109332219 -34950270 - AluSx SINE Alu -17 295 1 1712 166 3 30 chr12 109332219 109332300 -34950189 - AluJb SINE Alu -229 83 1 492 166 20 133 chr12 109332300 109332361 -34950128 + Charlie1 DNA MER1_type 2695 2761 0 277 312 0 0 chr12 109332455 109332532 -34949957 + L2 LINE L2 2648 2724 -590 378 229 110 17 chr12 109332722 109332840 -34949649 + MER58 DNA MER1_type 43 171 -2249 378 100 17 17 chr12 109332826 109332886 -34949603 + U5 snRNA snRNA 1 60 -56 964 215 5 9 chr12 109332886 109333100 -34949389 + AluJb SINE Alu 1 213 -99 587 213 0 0 chr12 109333349 109333457 -34949032 - MER96B DNA MER1_type? -309 108 1 188 292 90 0 chr12 109333682 109333771 -34948718 + MIR SINE MIR 153 249 -13 759 133 100 0 chr12 109333895 109334015 -34948474 - FLAM_C SINE Alu -10 133 2 299 264 80 27 chr12 109334615 109334841 -34947648 - L2 LINE L2 -80 3192 2917 513 121 204 89 chr12 109335054 109335188 -34947301 - MER53 DNA DNA 0 189 33 2265 120 0 3 chr12 109335188 109335496 -34946993 - AluSq SINE Alu -6 307 1 513 121 204 89 chr12 109335496 109335518 -34946971 - MER53 DNA DNA -156 33 15 1755 192 6 28 chr12 109336190 109336544 -34945945 + L1PB4 LINE L1 5807 6152 -4 2238 128 0 0 chr12 109336640 109336952 -34945537 - AluSx SINE Alu 0 312 1 640 110 0 22 chr12 109336976 109337067 -34945422 + 5S rRNA rRNA 2 90 -31 2101 154 3 0 chr12 109337179 109337485 -34945004 - AluSx SINE Alu -5 307 1 1940 124 0 0 chr12 109337558 109337825 -34944664 + AluSx SINE Alu 22 288 -24 23 0 0 0 chr12 109337829 109337852 -34944637 + AT_rich Low_complexity Low_complexity 1 23 0 2246 124 0 0 chr12 109338400 109338698 -34943791 + AluSx SINE Alu 3 300 -12 1791 127 34 7 chr12 109338698 109338990 -34943499 - Tigger1 DNA MER2_type -613 1805 1506 1100 108 0 0 chr12 109339145 109339284 -34943205 - AluSq/x SINE Alu -174 139 1 435 93 0 35 chr12 109339382 109339468 -34943021 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 201 139 0 0 chr12 109339458 109339501 -34942988 + (TTCTC)n Simple_repeat Simple_repeat 5 47 0 * 400 139 63 0 chr12 109339501 109339580 -34942909 - LTR9 LTR ERV1 -91 521 438 2022 142 6 22 chr12 109339839 109340156 -34942333 + AluJb SINE Alu 1 312 0 330 308 28 20 chr12 109340178 109340425 -34942064 - L1M4 LINE L1 -2936 3210 2962 1613 166 0 51 chr12 109340690 109341004 -34941485 + AluJo SINE Alu 6 303 -9 886 129 0 15 chr12 109341037 109341169 -34941320 + FLAM_C SINE Alu 3 132 -1 231 146 98 0 chr12 109341180 109341221 -34941268 + MER66A LTR ERV1 294 338 -140 22 0 0 0 chr12 109341236 109341258 -34941231 + AT_rich Low_complexity Low_complexity 1 22 0 537 229 52 20 chr12 109341315 109341468 -34941021 - LTR41 LTR ERVL -613 160 3 2371 181 23 23 chr12 109391482 109392056 -34890433 + L1 LINE L1 4738 5311 -835 1912 153 20 0 chr12 109392061 109392355 -34890134 - AluSq SINE Alu -13 300 1 324 246 102 34 chr12 109392493 109392611 -34889878 - MIR SINE MIR 0 262 137 1332 130 19 19 chr12 109392613 109392828 -34889661 - AluSg/x SINE Alu -13 299 85 315 287 148 0 chr12 109392844 109392945 -34889544 - MIR SINE MIR -137 125 10 1076 243 84 73 chr12 109392945 109393410 -34889079 - MLT1J LTR MaLR -4 507 38 196 318 15 0 chr12 109393990 109394056 -34888433 - MER5A DNA MER1_type -89 100 34 * 212 288 14 14 chr12 109394003 109394076 -34888413 + MER5A DNA MER1_type 115 187 -2 204 40 0 0 chr12 109394174 109394199 -34888290 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2131 95 0 4 chr12 109394203 109394477 -34888012 - AluSg SINE Alu -37 273 1 293 180 0 0 chr12 109394683 109394733 -34887756 + L2 LINE L2 3264 3313 0 438 236 104 0 chr12 109394838 109394944 -34887545 - MIR SINE MIR -97 165 49 2215 92 0 30 chr12 109396459 109396764 -34885725 - AluSq SINE Alu -15 298 3 2207 101 10 0 chr12 109397375 109397671 -34884818 + AluSp SINE Alu 3 301 -12 25 0 0 0 chr12 109397835 109397860 -34884629 + AT_rich Low_complexity Low_complexity 1 25 0 269 204 0 0 chr12 109400059 109400108 -34882381 - MIR SINE MIR -63 145 97 324 48 0 0 chr12 109402136 109402178 -34880311 + (TG)n Simple_repeat Simple_repeat 2 43 0 532 300 176 8 chr12 109402770 109403020 -34879469 + L3 LINE CR1 450 741 -836 245 340 118 7 chr12 109403027 109403171 -34879318 - L2 LINE L2 -5 3267 3108 2238 108 0 7 chr12 109403432 109403738 -34878751 + AluSq SINE Alu 1 304 -9 184 308 0 0 chr12 109403796 109403848 -34878641 + L3 LINE CR1 767 818 -759 314 329 59 72 chr12 109403984 109404206 -34878283 + HAL1 LINE L1 163 381 -2126 30 97 0 0 chr12 109404281 109404374 -34878115 + AT_rich Low_complexity Low_complexity 1 93 0 185 254 102 34 chr12 109404410 109404469 -34878020 - MER5B DNA MER1_type -53 125 63 23 68 0 0 chr12 109404791 109404835 -34877654 + AT_rich Low_complexity Low_complexity 1 44 0 398 255 138 64 chr12 109404924 109405112 -34877377 - MIR SINE MIR 0 262 61 2046 112 20 10 chr12 109405353 109405648 -34876841 - AluSq SINE Alu -15 298 1 2155 127 3 0 chr12 109405663 109405963 -34876526 - AluSx SINE Alu -11 301 1 4406 124 118 7 chr12 109405967 109406808 -34875681 + Tigger3b DNA MER2_type 298 1231 0 758 130 16 0 chr12 109407117 109407240 -34875249 - L1M4 LINE L1 -571 5603 5479 3730 140 40 16 chr12 109407250 109407927 -34874562 - L1MB3 LINE L1 0 6183 5491 1738 191 10 0 chr12 109407930 109408228 -34874261 - AluJo SINE Alu -11 301 1 221 143 0 32 chr12 109408232 109408295 -34874194 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 1965 93 0 8 chr12 109408298 109408557 -34873932 - AluSx SINE Alu -55 257 1 387 271 83 99 chr12 109409478 109409914 -34872575 + MLT1K LTR MaLR 159 587 -1 2425 93 3 0 chr12 109410264 109410576 -34871913 + AluSq SINE Alu 1 313 0 685 267 31 11 chr12 109411828 109412019 -34870470 - MIR SINE MIR 0 262 68 298 378 95 33 chr12 109413345 109414005 -34868484 - L2 LINE L2 -143 3129 2430 818 142 8 15 chr12 109415249 109415383 -34867106 + FLAM_C SINE Alu 1 133 0 377 191 0 0 chr12 109415554 109415617 -34866872 - L2 LINE L2 -2 3311 3249 2806 250 55 44 chr12 109415687 109416006 -34866483 + L1MEc LINE L1 211 525 -6038 225 0 0 0 chr12 109416006 109416031 -34866458 + (GA)n Simple_repeat Simple_repeat 1 25 0 2806 250 55 44 chr12 109416031 109416356 -34866133 + L1MEc LINE L1 525 845 -5718 2079 109 0 11 chr12 109416356 109416631 -34865858 - AluSx SINE Alu -16 296 25 2806 250 55 44 chr12 109416631 109417086 -34865403 + L1MEc LINE L1 845 1324 -5239 2149 131 7 3 chr12 109417088 109417393 -34865096 + AluSx SINE Alu 3 308 -4 1209 203 5 0 chr12 109417433 109417650 -34864839 + AluJo SINE Alu 87 304 -8 374 240 27 33 chr12 109417678 109417828 -34864661 + L1MEc LINE L1 1202 1350 -5034 343 329 191 11 chr12 109418117 109418467 -34864022 + L2 LINE L2 1514 1926 -1388 13022 156 31 35 chr12 109418510 109419660 -34862829 - L1MA3 LINE L1 0 6305 5152 352 89 6 0 chr12 109419660 109419719 -34862770 - Alu SINE Alu -10 292 245 13022 156 31 35 chr12 109419719 109420473 -34862016 - L1MA3 LINE L1 -1153 5152 4396 243 0 0 0 chr12 109420473 109420500 -34861989 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 13022 156 31 35 chr12 109420500 109421495 -34860994 - L1MA3 LINE L1 -1909 4396 3398 2423 43 0 0 chr12 109421495 109421804 -34860685 + AluY SINE Alu 1 309 0 13022 156 31 35 chr12 109421804 109422889 -34859600 - L1MA3 LINE L1 -2907 3398 2278 332 269 0 86 chr12 109424142 109424235 -34858254 + L2 LINE L2 3187 3271 -1 1236 77 86 5 chr12 109424544 109424764 -34857725 - L1M1 LINE L1 -4008 3557 3320 837 64 0 0 chr12 109424762 109424887 -34857602 - L1M1 LINE L1 -4799 2766 2642 * 1832 163 64 0 chr12 109424890 109425233 -34857256 - MER57A LTR ERV1 -4 399 35 10231 125 35 9 chr12 109425242 109425831 -34856658 - L1M1 LINE L1 -4922 2643 2070 2221 59 73 3 chr12 109425831 109426118 -34856371 + AluY SINE Alu 1 307 -4 10231 125 35 9 chr12 109426118 109426379 -34856110 - L1M1 LINE L1 -5495 2070 1817 297 0 0 0 chr12 109426379 109426412 -34856077 + (TC)n Simple_repeat Simple_repeat 2 34 0 10231 125 35 9 chr12 109426412 109427237 -34855252 - L1M1 LINE L1 -5748 1817 925 703 305 152 44 chr12 109427249 109427738 -34854751 + L2 LINE L2 2150 2585 -687 216 0 0 0 chr12 109427738 109427762 -34854727 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 703 305 152 44 chr12 109427762 109427781 -34854708 + L2 LINE L2 2585 2601 -671 399 71 47 106 chr12 109427781 109427866 -34854623 + MADE1 DNA Mariner 1 80 0 703 305 152 44 chr12 109427866 109428195 -34854294 + L2 LINE L2 2601 3085 -187 677 254 109 32 chr12 109428302 109428522 -34853967 + L2 LINE L2 3077 3313 0 296 294 88 20 chr12 109428593 109428695 -34853794 + L2 LINE L2 3128 3236 -36 190 333 0 18 chr12 109428752 109428809 -34853680 + L2 LINE L2 3246 3301 -12 503 225 43 7 chr12 109429045 109429183 -34853306 - L1MC5 LINE L1 -759 7202 7060 222 37 0 0 chr12 109430176 109430203 -34852286 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3617 130 0 9 chr12 109431086 109431616 -34850873 - MER1A DNA MER1_type 0 527 3 189 147 0 0 chr12 109431633 109431667 -34850822 + (CTA)n Simple_repeat Simple_repeat 2 35 0 423 307 106 6 chr12 109431675 109431854 -34850635 - MIR SINE MIR -38 224 28 385 348 9 0 chr12 109431925 109432037 -34850452 + L2 LINE L2 3155 3267 -5 195 129 0 0 chr12 109432456 109432487 -34850002 + (CA)n Simple_repeat Simple_repeat 1 31 0 342 322 0 14 chr12 109433888 109434000 -34848489 + MIR SINE MIR 9 116 -92 894 160 28 0 chr12 109435064 109435245 -34847244 - L1MA6 LINE L1 0 6300 6115 34 42 0 0 chr12 109435578 109435626 -34846863 + AT_rich Low_complexity Low_complexity 1 48 0 319 156 9 18 chr12 109436770 109436879 -34845610 + (TAA)n Simple_repeat Simple_repeat 3 110 0 786 340 51 22 chr12 109438188 109438694 -34843795 + MERVL LTR ERVL 929 1449 -3547 791 326 56 25 chr12 109438719 109439219 -34843270 + MERVL LTR ERVL 1825 2340 -2656 844 328 65 29 chr12 109439252 109439501 -34842988 + MERVL LTR ERVL 2403 2642 -3012 2199 98 13 22 chr12 109439501 109439816 -34842673 - AluSx SINE Alu 0 312 1 844 328 65 29 chr12 109439816 109440696 -34841793 + MERVL LTR ERVL 2642 3617 -2037 350 322 118 39 chr12 109440784 109441141 -34841348 - MLT1H LTR MaLR -152 397 13 1460 313 57 37 chr12 109441214 109442070 -34840419 + MERVL LTR ERVL 3721 4593 -1171 4829 156 37 4 chr12 109442652 109443605 -34838884 + L1MA4 LINE L1 5315 6298 -2 33 66 0 0 chr12 109443791 109443852 -34838637 + AT_rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr12 109444115 109444136 -34838353 + AT_rich Low_complexity Low_complexity 1 21 0 640 291 51 0 chr12 109445061 109445236 -34837253 - MER5A DNA MER1_type -2 187 4 210 325 170 34 chr12 109445241 109445447 -34837042 + MIR SINE MIR 6 239 -23 294 165 0 0 chr12 109445613 109445692 -34836797 + G-rich Low_complexity Low_complexity 1 79 0 1162 137 11 22 chr12 109445987 109446170 -34836319 - AluSp SINE Alu -19 294 114 481 339 87 33 chr12 109446275 109446849 -34835640 + L2 LINE L2 2451 3056 -216 192 256 171 37 chr12 109446991 109447073 -34835416 - L2 LINE L2 -1 3271 3179 2112 167 3 13 chr12 109448406 109448784 -34833705 - MLT1A2 LTR MaLR 0 374 1 458 174 28 28 chr12 109449988 109450097 -34832392 - AluSp SINE Alu -202 111 3 6111 164 16 7 chr12 109450111 109451337 -34831152 - L1 LINE L1 -1732 4414 3178 199 157 118 39 chr12 109451373 109451424 -34831065 + MIR SINE MIR 198 252 -10 2316 117 0 0 chr12 109451525 109451825 -34830664 - AluSx SINE Alu -12 300 1 611 223 272 10 chr12 109451876 109452082 -34830407 + MIR SINE MIR 3 262 0 495 324 77 6 chr12 109452181 109452351 -34830138 + MIR3 SINE MIR 21 202 -6 204 125 0 0 chr12 109452408 109452440 -34830049 + (CA)n Simple_repeat Simple_repeat 1 32 0 341 216 172 15 chr12 109452925 109453059 -34829430 - MLT1K LTR MaLR -1 587 433 237 65 0 0 chr12 109453872 109453903 -34828586 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 309 128 0 149 chr12 109453953 109454047 -34828442 + MER103 DNA DNA 12 91 -75 232 238 0 16 chr12 109454165 109454228 -34828261 - MIR3 SINE MIR -48 160 99 185 219 24 0 chr12 109454518 109454559 -34827930 - L2 LINE L2 -8 3305 3264 723 250 46 10 chr12 109454606 109454802 -34827687 + MIR SINE MIR 50 252 -10 472 250 80 37 chr12 109454945 109455133 -34827356 + MER117 DNA MER1_type 1 196 -1 284 246 0 0 chr12 109455973 109456038 -34826451 - MLT1K LTR MaLR 0 588 524 1902 155 0 23 chr12 109458311 109458621 -34823868 + AluJb SINE Alu 1 303 -9 586 284 40 16 chr12 109459235 109459445 -34823044 + MLT1H1 LTR MaLR 4 222 -308 31 0 0 0 chr12 109459490 109459521 -34822968 + GC_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr12 109459583 109459618 -34822871 + GC_rich Low_complexity Low_complexity 1 35 0 443 192 2 12 chr12 109460190 109460289 -34822200 - MLT1H LTR MaLR -392 157 16 387 0 0 0 chr12 109460292 109460335 -34822154 + (CA)n Simple_repeat Simple_repeat 2 44 0 1890 122 63 0 chr12 109460342 109460612 -34821877 + AluSx SINE Alu 14 300 -12 26 0 0 0 chr12 109460612 109460638 -34821851 + AT_rich Low_complexity Low_complexity 1 26 0 308 297 54 0 chr12 109460769 109460880 -34821609 + MLT1I LTR MaLR 293 409 0 287 241 193 52 chr12 109460898 109461147 -34821342 + L1ME4a LINE L1 5817 6100 -21 2282 118 0 0 chr12 109461213 109461510 -34820979 + AluSx SINE Alu 1 297 -15 332 329 88 0 chr12 109461586 109461756 -34820733 + MLT1I LTR MaLR 86 270 -139 1411 61 53 134 chr12 109462189 109462436 -34820053 + MER30 DNA MER1_type 3 229 -1 381 296 30 65 chr12 109463515 109463714 -34818775 + L2 LINE L2 2850 3041 -231 199 211 26 0 chr12 109463838 109463876 -34818613 + MIR SINE MIR 218 256 -6 302 313 28 34 chr12 109464014 109464193 -34818296 + CT-rich Low_complexity Low_complexity 3 180 0 * 533 271 6 40 chr12 109464125 109464302 -34818187 + C-rich Low_complexity Low_complexity 2 172 0 3605 183 6 41 chr12 109464428 109464589 -34817900 - L1MB3 LINE L1 -127 6056 5891 2222 123 0 3 chr12 109464589 109464882 -34817607 + AluSx SINE Alu 1 292 -20 3605 183 6 41 chr12 109464882 109465542 -34816947 - L1MB3 LINE L1 -292 5891 5264 477 342 37 22 chr12 109465539 109465943 -34816546 - HAL1b LINE L1 -811 537 128 * 21 0 0 0 chr12 109465951 109465972 -34816517 + AT_rich Low_complexity Low_complexity 1 21 0 1067 174 19 7 chr12 109465986 109466188 -34816301 - L1P5 LINE L1 -622 5534 5330 1907 164 0 0 chr12 109466188 109466486 -34816003 - AluJo SINE Alu -14 298 1 1067 174 19 7 chr12 109466486 109466510 -34815979 - L1P5 LINE L1 -826 5330 5308 232 175 79 0 chr12 109466493 109466556 -34815933 - L1MB3 LINE L1 -950 5196 5129 * 1587 249 26 26 chr12 109466605 109467111 -34815378 - L1MB3 LINE L1 -1860 4286 3781 2504 192 43 3 chr12 109467111 109467693 -34814796 - L1MC2 LINE L1 0 6344 5740 337 123 0 0 chr12 109467694 109467751 -34814738 + AluS SINE Alu 3 59 -242 2242 84 0 0 chr12 109467851 109468135 -34814354 + AluY SINE Alu 27 310 -1 2171 131 3 0 chr12 109468151 109468457 -34814032 + AluSx SINE Alu 1 307 -5 248 244 49 104 chr12 109468855 109469019 -34813470 - L2 LINE L2 -266 3006 2852 1100 184 62 16 chr12 109469548 109469852 -34812637 + MER33 DNA MER1_type 2 319 -5 21 0 0 0 chr12 109470094 109470115 -34812374 + AT_rich Low_complexity Low_complexity 1 21 0 1951 112 47 4 chr12 109470671 109470949 -34811540 - AluSc SINE Alu -19 290 1 1360 196 49 7 chr12 109471601 109471887 -34810602 + AluJb SINE Alu 1 298 -14 377 339 36 0 chr12 109471976 109472088 -34810401 + MIR SINE MIR 5 120 -142 2108 98 0 75 chr12 109472930 109473248 -34809241 - AluSq SINE Alu -19 294 1 346 324 0 0 chr12 109474514 109474653 -34807836 + C-rich Low_complexity Low_complexity 1 139 0 362 359 6 28 chr12 109474870 109475146 -34807343 + G-rich Low_complexity Low_complexity 1 269 0 188 263 0 35 chr12 109475181 109475295 -34807194 + GA-rich Low_complexity Low_complexity 1 110 0 1461 172 3 75 chr12 109475651 109475980 -34806509 - AluJo SINE Alu 0 307 1 26 0 0 0 chr12 109476195 109476221 -34806268 + AT_rich Low_complexity Low_complexity 1 26 0 233 183 17 0 chr12 109477807 109477867 -34804622 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 22 0 0 0 chr12 109477884 109477906 -34804583 + AT_rich Low_complexity Low_complexity 1 22 0 207 69 0 0 chr12 109479284 109479313 -34803176 + (TAGTG)n Simple_repeat Simple_repeat 1 29 0 837 250 48 44 chr12 109479314 109479562 -34802927 + MIR SINE MIR 13 261 -1 22 70 0 0 chr12 109479763 109479806 -34802683 + AT_rich Low_complexity Low_complexity 1 43 0 492 218 190 7 chr12 109479920 109480062 -34802427 - MER5A DNA MER1_type 0 189 22 1820 174 7 0 chr12 109480109 109480413 -34802076 - AluJb SINE Alu -6 306 1 23 33 0 0 chr12 109480615 109480645 -34801844 + AT_rich Low_complexity Low_complexity 1 30 0 653 277 78 6 chr12 109481285 109481451 -34801038 + MIR SINE MIR 7 184 -78 22 35 0 0 chr12 109481929 109481958 -34800531 + AT_rich Low_complexity Low_complexity 1 29 0 2212 93 7 0 chr12 109483143 109483434 -34799055 - AluSc SINE Alu -16 293 1 459 237 88 9 chr12 109483525 109483639 -34798850 + L2 LINE L2 3190 3312 -1 299 281 58 53 chr12 109484639 109484810 -34797679 - MIR SINE MIR 0 262 91 821 214 196 38 chr12 109485034 109485139 -34797350 + Charlie4a DNA MER1_type 42 129 -1832 2115 110 50 10 chr12 109485139 109485439 -34797050 + AluSx SINE Alu 1 312 0 821 214 196 38 chr12 109485439 109485731 -34796758 + Charlie4a DNA MER1_type 129 502 -6 778 226 40 6 chr12 109485945 109486122 -34796367 - MER20 DNA MER1_type -4 215 33 24 0 0 0 chr12 109486834 109486858 -34795631 + AT_rich Low_complexity Low_complexity 1 24 0 1595 135 93 4 chr12 109486901 109487160 -34795329 + AluJo SINE Alu 21 302 -10 1559 200 48 0 chr12 109487182 109487299 -34795190 + AluJb SINE Alu 1 111 -201 351 0 0 0 chr12 109487299 109487338 -34795151 + (CA)n Simple_repeat Simple_repeat 2 40 0 1559 200 48 0 chr12 109487338 109487510 -34794979 + AluJb SINE Alu 111 304 -8 536 272 83 18 chr12 109488583 109488752 -34793737 + MIR SINE MIR 82 261 -1 5239 194 261 8 chr12 109488863 109490625 -34791864 + L1MA8 LINE L1 460 2666 -4830 1792 213 50 22 chr12 109490630 109491239 -34791250 + L1MA8 LINE L1 3073 3709 -3856 848 129 0 0 chr12 109491246 109491362 -34791127 + AluJb SINE Alu 7 122 -190 2418 198 88 11 chr12 109491366 109492084 -34790405 + L1MA8 LINE L1 3985 4757 -2808 2262 112 10 0 chr12 109492179 109492483 -34790006 - AluSx SINE Alu -1 311 5 1111 144 21 158 chr12 109493338 109493712 -34788777 + L1MA8 LINE L1 6344 6666 -899 4435 137 16 3 chr12 109493713 109494475 -34788014 + L1MA8 LINE L1 6937 7708 -2 189 0 0 0 chr12 109495449 109495470 -34787019 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 564 198 19 0 chr12 109495471 109495577 -34786912 - FLAM_A SINE Alu -30 112 5 2286 110 3 0 chr12 109495811 109496120 -34786369 + AluSx SINE Alu 1 310 -2 526 97 8 179 chr12 109497652 109497786 -34784703 - FLAM_C SINE Alu -30 113 3 681 210 19 25 chr12 109497912 109498069 -34784420 - FRAM SINE Alu -10 156 1 212 228 30 99 chr12 109498075 109498131 -34784358 - L2 LINE L2 -430 2884 2836 3551 112 110 2 chr12 109498131 109498703 -34783786 - MER51A LTR ERV1 0 634 1 212 228 30 99 chr12 109498703 109498747 -34783742 - L2 LINE L2 -478 2836 2791 435 294 22 7 chr12 109498861 109498997 -34783492 + L2 LINE L2 1979 2116 -1198 730 285 0 0 chr12 109499035 109499214 -34783275 - L2 LINE L2 -422 2892 2714 598 321 135 28 chr12 109499341 109499838 -34782651 + L2 LINE L2 2456 3010 -262 705 264 52 52 chr12 109499844 109500496 -34781993 - L1M4c LINE L1 -4918 1299 787 216 336 186 0 chr12 109501285 109501398 -34781091 + L2 LINE L2 3117 3250 -22 185 154 26 0 chr12 109501643 109501682 -34780807 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 779 163 112 36 chr12 109501692 109501888 -34780601 + MER7A DNA MER2_type 1 209 -137 350 254 40 32 chr12 109502627 109502753 -34779736 + HAL1 LINE L1 626 752 -1755 369 200 91 27 chr12 109502846 109502956 -34779533 - MER74A LTR ERVL -63 495 379 21 0 0 0 chr12 109505120 109505141 -34777348 + AT_rich Low_complexity Low_complexity 1 21 0 348 304 0 11 chr12 109505853 109505945 -34776544 - MIR3 SINE MIR -27 181 91 25 31 0 0 chr12 109506000 109506032 -34776457 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr12 109506318 109506349 -34776140 + AT_rich Low_complexity Low_complexity 1 31 0 562 218 48 0 chr12 109506350 109506497 -34775992 - L1MA9 LINE L1 -24 6288 6135 895 275 44 3 chr12 109506559 109506923 -34775566 + L1MC/D LINE L1 3394 3772 -2374 777 241 7 33 chr12 109506922 109507192 -34775297 + L1MC/D LINE L1 5355 5617 -727 * 276 280 256 14 chr12 109507840 109508047 -34774442 - MIR SINE MIR 0 262 6 249 325 96 24 chr12 109508131 109508297 -34774192 - L3b LINE CR1 -117 1466 1289 728 247 49 5 chr12 109508676 109508899 -34773590 - AluSx SINE Alu -16 296 64 502 248 83 0 chr12 109509368 109509477 -34773012 - MER91C DNA MER1_type -1 139 22 192 150 50 25 chr12 109509546 109509586 -34772903 - MIR SINE MIR -5 257 217 252 216 54 0 chr12 109509655 109509729 -34772760 + (TA)n Simple_repeat Simple_repeat 2 79 0 803 159 7 7 chr12 109510007 109510152 -34772337 + MLT1J2 LTR MaLR 1 145 -305 396 51 82 10 chr12 109510152 109510250 -34772239 + (TA)n Simple_repeat Simple_repeat 2 106 0 637 288 121 12 chr12 109510250 109510507 -34771982 + MLT1J2 LTR MaLR 163 447 -3 213 233 14 14 chr12 109510749 109510822 -34771667 + (TGGG)n Simple_repeat Simple_repeat 2 74 0 32 0 0 0 chr12 109510906 109510938 -34771551 + GC_rich Low_complexity Low_complexity 1 32 0 266 333 167 8 chr12 109511646 109511778 -34770711 - MER91A DNA MER1_type -23 173 21 2429 93 0 0 chr12 109511957 109512259 -34770230 + AluSx SINE Alu 1 302 -10 1604 182 79 9 chr12 109512328 109512668 -34769821 - MLT1A1 LTR MaLR 0 365 2 2655 138 72 43 chr12 109513321 109513879 -34768610 + MER4B LTR ERV1 1 574 -36 342 257 35 26 chr12 109514141 109514254 -34768235 + LTR16C LTR ERVL 370 483 -8 407 269 74 24 chr12 109514942 109515097 -34767392 - MER58A DNA MER1_type 0 151 1 277 182 18 0 chr12 109515098 109515153 -34767336 + MLT1H LTR MaLR 494 549 0 372 180 79 0 chr12 109515834 109515923 -34766566 + MLT1L LTR MaLR 1 96 -499 430 276 28 14 chr12 109516569 109516714 -34765775 + MLT1L LTR MaLR 91 237 -312 371 318 73 64 chr12 109517110 109517705 -34764784 + ERVL LTR ERVL 4728 5346 -308 2098 119 10 0 chr12 109518363 109518657 -34763832 - AluSx SINE Alu -15 297 1 343 338 58 0 chr12 109518657 109518796 -34763693 + LTR16C LTR ERVL 343 489 -2 2157 122 0 16 chr12 109521421 109521724 -34760765 - AluSx SINE Alu -14 298 1 280 292 100 23 chr12 109522445 109522575 -34759914 - MIR SINE MIR -28 234 95 1656 140 92 41 chr12 109523042 109523335 -34759154 - AluSx SINE Alu -4 308 1 22 0 0 0 chr12 109523509 109523531 -34758958 + AT_rich Low_complexity Low_complexity 1 22 0 1857 160 3 29 chr12 109524531 109524843 -34757646 - AluJo SINE Alu -3 309 6 251 225 270 9 chr12 109525100 109525211 -34757278 + MLT1L LTR MaLR 32 171 -444 482 264 116 32 chr12 109525291 109525446 -34757043 + MLT1L LTR MaLR 354 521 -94 285 171 85 27 chr12 109525495 109525594 -34756895 + HsTC2 DNA Tc2 21 1842 -56 1663 135 107 6 chr12 109526980 109527307 -34755182 + MER46B DNA MER2_type 1 235 -1 2189 95 17 10 chr12 109527412 109527708 -34754781 + AluSq SINE Alu 1 298 -15 396 255 138 64 chr12 109527949 109528137 -34754352 + MIR SINE MIR 61 262 0 2222 112 7 0 chr12 109529088 109529382 -34753107 - AluSx SINE Alu -16 296 1 26 0 0 0 chr12 109529457 109529483 -34753006 + AT_rich Low_complexity Low_complexity 1 26 0 4470 180 35 21 chr12 109529752 109530822 -34751667 - L1 LINE L1 -781 5365 4281 239 33 0 0 chr12 109531005 109531035 -34751454 - L1 LINE L1 -2004 4142 4113 5942 156 38 3 chr12 109531036 109532156 -34750333 + L1 LINE L1 3741 4899 -1247 2440 196 58 50 chr12 109532771 109533409 -34749080 + MER82 DNA MER2_type 11 653 0 1053 171 6 0 chr12 109533645 109533821 -34748668 + AluJb SINE Alu 133 309 -3 623 296 18 18 chr12 109533917 109534137 -34748352 - MIR SINE MIR -41 221 2 842 277 23 0 chr12 109534348 109534604 -34747885 + MIR SINE MIR 1 262 0 233 287 35 17 chr12 109534726 109534841 -34747648 + MER103 DNA DNA 10 126 -40 775 211 136 5 chr12 109534871 109535070 -34747419 + MIR SINE MIR 36 260 -2 1663 131 71 25 chr12 109535089 109535371 -34747118 - AluJb SINE Alu -17 295 1 712 226 208 9 chr12 109535860 109536072 -34746417 - MIR SINE MIR -6 256 3 1013 250 38 0 chr12 109537435 109537671 -34744818 + MIR SINE MIR 18 262 0 1377 164 13 0 chr12 109537738 109537963 -34744526 + AluJb SINE Alu 1 228 -84 401 141 31 0 chr12 109538034 109538098 -34744391 + AluJb SINE Alu 233 298 -4 230 0 33 0 chr12 109538468 109538498 -34743991 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1943 166 0 6 chr12 109538511 109538825 -34743664 + AluJb SINE Alu 1 312 0 1616 167 13 51 chr12 109540177 109540488 -34742001 + AluJb SINE Alu 3 301 -11 942 226 56 59 chr12 109541724 109542061 -34740428 - L1ME3A LINE L1 -14 6156 5821 6074 84 41 67 chr12 109542080 109543102 -34739387 - SVA Other Other 0 1386 391 730 274 0 99 chr12 109543153 109543456 -34739033 - L1ME3A LINE L1 -342 5828 5556 24 32 0 0 chr12 109544014 109544045 -34738444 + AT_rich Low_complexity Low_complexity 1 31 0 2330 99 0 10 chr12 109544489 109544803 -34737686 + AluSx SINE Alu 1 311 -1 209 216 20 0 chr12 109546335 109546386 -34736103 + (TAG)n Simple_repeat Simple_repeat 2 53 0 250 309 22 29 chr12 109548720 109548856 -34733633 + (TATATG)n Simple_repeat Simple_repeat 1 135 0 209 271 0 34 chr12 109549208 109549267 -34733222 + MER91 DNA MER1_type 12 68 -72 285 275 108 22 chr12 109549386 109549608 -34732881 + MER20B DNA MER1_type 530 770 -13 357 278 133 75 chr12 109550329 109550675 -34731814 - MLT1I LTR MaLR -41 368 3 26 0 0 0 chr12 109550714 109550740 -34731749 + AT_rich Low_complexity Low_complexity 1 26 0 1929 167 0 0 chr12 109551906 109552200 -34730289 - AluSx SINE Alu -16 296 3 988 286 24 0 chr12 109553780 109554035 -34728454 - MIR SINE MIR 0 262 2 2204 112 7 0 chr12 109555101 109555395 -34727094 - AluSx SINE Alu -16 296 1 26 0 0 0 chr12 109555470 109555496 -34726993 + AT_rich Low_complexity Low_complexity 1 26 0 6149 156 35 15 chr12 109555765 109556994 -34725495 - L1 LINE L1 -781 5365 4112 1974 181 24 0 chr12 109556994 109557375 -34725114 + L1 LINE L1 3741 4130 -2016 3672 199 45 15 chr12 109557377 109558519 -34723970 - L1M3 LINE L1 -556 5615 4428 1857 152 0 21 chr12 109558613 109558903 -34723586 + AluJb SINE Alu 1 284 -28 2173 114 10 3 chr12 109558953 109559252 -34723237 + AluSx SINE Alu 2 302 -10 1191 231 111 43 chr12 109559252 109559667 -34722822 + MLT1C LTR MaLR 17 459 -8 269 351 18 9 chr12 109559811 109559922 -34722567 + MIR3 SINE MIR 66 177 -31 2629 164 13 2 chr12 109560136 109560592 -34721897 + LOR1b LTR ERV1 1 461 0 537 245 78 5 chr12 109560995 109561187 -34721302 + L1ME3A LINE L1 5757 5962 -208 1530 216 74 102 chr12 109561404 109561974 -34720515 + MLT2B3 LTR ERVL 1 554 0 28 0 0 0 chr12 109562916 109562944 -34719545 + AT_rich Low_complexity Low_complexity 1 28 0 1736 233 141 52 chr12 109563498 109563587 -34718902 + L1ME3 LINE L1 5374 5454 -708 1576 193 0 25 chr12 109563587 109563903 -34718586 + AluJb SINE Alu 1 308 -4 1736 233 141 52 chr12 109563903 109563931 -34718558 + L1ME3 LINE L1 5454 5478 -684 1610 181 7 11 chr12 109563931 109564218 -34718271 + AluJb SINE Alu 1 286 -26 1736 233 141 52 chr12 109564218 109564824 -34717665 + L1ME3 LINE L1 5478 6162 0 721 185 0 30 chr12 109565884 109566019 -34716470 + FLAM_C SINE Alu 1 131 -2 229 318 0 24 chr12 109566585 109566670 -34715819 + L1MEd LINE L1 269 351 -5768 866 297 78 19 chr12 109568046 109568366 -34714123 - L3 LINE CR1 -13 1564 1226 557 168 0 72 chr12 109568635 109568760 -34713729 + MER33 DNA MER1_type 1 116 -208 334 310 35 26 chr12 109568991 109569107 -34713382 - L3 LINE CR1 -1053 524 408 2146 87 11 7 chr12 109570093 109570390 -34712099 + AluSg SINE Alu 2 299 0 1897 126 45 0 chr12 109570542 109570828 -34711661 + AluSx SINE Alu 1 299 -13 394 302 0 35 chr12 109571123 109571239 -34711250 - MIR SINE MIR -149 113 2 456 299 103 21 chr12 109572257 109572451 -34710038 - MIR SINE MIR 0 262 53 960 91 91 7 chr12 109572634 109572788 -34709701 + L1PA10 LINE L1 5998 6164 -4 197 143 24 24 chr12 109573930 109573972 -34708517 + MIR SINE MIR 38 79 -129 298 290 150 24 chr12 109574075 109574282 -34708207 - MIR SINE MIR -17 245 13 1166 181 148 26 chr12 109574573 109574877 -34707612 + MER58B DNA MER1_type 1 341 0 2103 107 59 0 chr12 109574915 109575205 -34707284 - AluSx SINE Alu -3 309 3 691 221 105 6 chr12 109575257 109575438 -34707051 - MIR SINE MIR -1 261 63 369 299 192 9 chr12 109576068 109576282 -34706207 + MIR SINE MIR 7 259 -3 361 258 73 16 chr12 109576283 109576407 -34706082 - MLT1H LTR MaLR -2 547 417 * 1380 175 191 10 chr12 109576398 109576712 -34705777 - MER68 LTR ERV1 -191 371 1 648 180 25 8 chr12 109576714 109576836 -34705653 - MLT1H LTR MaLR -342 207 84 198 310 90 40 chr12 109577743 109577843 -34704646 - MER5B DNA MER1_type -45 133 29 929 259 46 88 chr12 109578504 109578960 -34703529 - L2 LINE L2 -2 3311 2875 426 259 26 26 chr12 109579013 109579129 -34703360 - L2 LINE L2 -18 3295 3180 308 277 108 0 chr12 109579235 109579318 -34703171 - HAL1 LINE L1 -1994 513 422 314 327 49 62 chr12 109579449 109579837 -34702652 - L1MEd LINE L1 -5720 399 17 1981 122 37 0 chr12 109579874 109580168 -34702321 + AluSx SINE Alu 1 305 -7 2887 82 5 34 chr12 109580282 109580696 -34701793 - LTR17 LTR ERV1 -378 402 1 544 108 0 0 chr12 109580696 109580770 -34701719 - MER4D LTR ERV1 -69 803 730 1015 123 0 0 chr12 109580773 109580919 -34701570 - AluSg/x SINE Alu -2 310 165 3574 151 28 25 chr12 109580923 109581560 -34700929 - MER4E LTR ERV1 -139 640 2 247 349 101 0 chr12 109582173 109582282 -34700207 + L2 LINE L2 3139 3258 -14 436 352 108 35 chr12 109582417 109583082 -34699407 + L2 LINE L2 2143 2856 -458 1140 156 17 0 chr12 109583462 109583641 -34698848 - Tigger3(Golem) DNA MER2_type -3 3026 2845 544 94 59 0 chr12 109583741 109583826 -34698663 + L1PA13 LINE L1 6074 6163 0 7033 160 27 5 chr12 109583826 109585207 -34697282 - L1 LINE L1 -1145 5001 3590 4324 173 50 3 chr12 109585213 109586123 -34696366 + L1PB3 LINE L1 2698 3649 -2497 1881 161 7 7 chr12 109586184 109586489 -34696000 - AluJb SINE Alu -7 305 1 5550 150 18 12 chr12 109586687 109588187 -34694302 + L1PB3 LINE L1 4646 6153 -1 190 309 124 18 chr12 109588949 109589166 -34693323 - L2 LINE L2 -1611 1703 1464 272 130 0 0 chr12 109589635 109589681 -34692808 + L1PA8A LINE L1 5655 5700 -431 5589 69 1 0 chr12 109589718 109590442 -34692047 - L1PA6 LINE L1 0 6154 5430 201 74 0 0 chr12 109591309 109591336 -34691153 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 2295 92 7 0 chr12 109591490 109591785 -34690704 + AluSg SINE Alu 1 297 -13 557 276 98 5 chr12 109592353 109592556 -34689933 + L1MC4 LINE L1 6842 7063 -979 563 280 43 51 chr12 109592699 109592770 -34689719 + L1MC4a LINE L1 7086 7156 -652 2409 78 0 3 chr12 109592770 109593078 -34689411 - AluY SINE Alu -4 307 1 563 280 43 51 chr12 109593078 109593263 -34689226 + L1MC4a LINE L1 7156 7268 -540 385 281 41 0 chr12 109593305 109593451 -34689038 + L1MC5 LINE L1 7261 7412 -549 388 251 151 25 chr12 109593513 109593712 -34688777 + L1MC4 LINE L1 7700 7923 -119 2010 154 0 6 chr12 109593975 109594287 -34688202 + AluSx SINE Alu 1 310 -2 1008 66 0 0 chr12 109594425 109594547 -34687942 + AluY SINE Alu 1 122 -189 3808 57 0 0 chr12 109594830 109595302 -34687187 - L1PA7 LINE L1 -4 6150 5679 6456 69 9 2 chr12 109595302 109596186 -34686303 - L1PA7 LINE L1 -2992 3154 2265 * 12217 56 4 2 chr12 109596184 109597767 -34684722 + L1P LINE L1 3239 4823 -1323 1807 171 10 7 chr12 109598086 109598391 -34684098 + AluJb SINE Alu 1 306 -6 246 316 21 16 chr12 109598565 109598755 -34683734 + L1ME LINE L1 5698 5888 -233 296 356 30 0 chr12 109598758 109598859 -34683630 + MIR SINE MIR 9 112 -150 4849 142 41 59 chr12 109598871 109599213 -34683276 - L1MA8 LINE L1 -3 6288 5941 2306 76 7 0 chr12 109599213 109599504 -34682985 - AluY SINE Alu -18 293 1 4849 142 41 59 chr12 109599504 109600133 -34682356 - L1MA8 LINE L1 -350 5941 5326 628 246 8 0 chr12 109600133 109600259 -34682230 - FLAM_A SINE Alu -6 127 1 4849 142 41 59 chr12 109600259 109600603 -34681886 - L1MA8 LINE L1 -965 5326 4977 884 196 16 0 chr12 109600581 109600775 -34681714 - L1PA13 LINE L1 -1592 4554 4358 * 5781 104 23 22 chr12 109600784 109601545 -34680944 + L1PA13 LINE L1 4559 5318 -845 2120 122 0 13 chr12 109601545 109601856 -34680633 + AluSq SINE Alu 1 307 -6 5781 104 23 22 chr12 109601856 109602025 -34680464 + L1PA13 LINE L1 5318 5485 -678 2152 125 0 0 chr12 109602025 109602314 -34680175 + AluSx SINE Alu 10 298 -14 5781 104 23 22 chr12 109602314 109602895 -34679594 + L1PA13 LINE L1 5485 6079 -84 2141 118 0 23 chr12 109602895 109603201 -34679288 + AluSx SINE Alu 1 299 -13 5781 104 23 22 chr12 109603201 109603287 -34679202 + L1PA13 LINE L1 6079 6163 0 301 182 15 30 chr12 109603390 109603456 -34679033 + AluJb SINE Alu 69 133 -169 205 256 124 50 chr12 109603461 109603582 -34678907 - L2 LINE L2 -161 3152 3023 1700 156 28 17 chr12 109604232 109604521 -34677968 + AluJb SINE Alu 11 302 -10 1560 216 24 17 chr12 109604525 109604946 -34677543 - L1M4 LINE L1 -986 5094 4671 1205 286 45 51 chr12 109604949 109605951 -34676538 - L1ME LINE L1 -4785 1297 389 369 220 15 98 chr12 109606623 109606755 -34675734 - MER103 DNA DNA -45 121 1 284 327 53 18 chr12 109606887 109607000 -34675489 - MIR3 SINE MIR 0 208 92 249 333 48 0 chr12 109607195 109607279 -34675210 - LTR67 LTR ERVL -283 274 187 955 248 63 4 chr12 109608183 109608421 -34674068 - MIR SINE MIR 0 262 11 25 0 0 0 chr12 109608636 109608661 -34673828 + AT_rich Low_complexity Low_complexity 1 25 0 412 279 167 12 chr12 109608706 109608946 -34673543 - HAL1 LINE L1 -573 1934 1658 1398 278 119 65 chr12 109608988 109609914 -34672575 - HAL1 LINE L1 -1511 996 21 29 0 0 0 chr12 109610222 109610251 -34672238 + AT_rich Low_complexity Low_complexity 1 29 0 1256 259 68 54 chr12 109612011 109612452 -34670037 - MLT1J LTR MaLR -64 447 1 1471 172 124 43 chr12 109615776 109616073 -34666416 + LTR8A LTR ERV1 326 660 -67 1648 174 25 3 chr12 109616073 109616355 -34666134 - AluJo SINE Alu -24 288 1 1471 172 124 43 chr12 109616355 109616429 -34666060 + LTR8A LTR ERV1 660 727 0 231 229 14 0 chr12 109617291 109617361 -34665128 + (TA)n Simple_repeat Simple_repeat 2 72 0 1935 118 0 0 chr12 109617400 109617662 -34664827 - AluSc SINE Alu -12 297 36 273 57 0 0 chr12 109618152 109618187 -34664302 + (CA)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr12 109618752 109618774 -34663715 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 359 229 32 122 chr12 109621086 109621274 -34661215 - MIR3 SINE MIR -6 202 32 216 130 0 0 chr12 109621845 109621891 -34660598 + (TA)n Simple_repeat Simple_repeat 1 46 0 428 227 83 53 chr12 109622869 109623001 -34659488 - MIR SINE MIR -50 212 77 3157 154 43 2 chr12 109624113 109624619 -34657870 + MER1A DNA MER1_type 1 527 0 202 331 66 25 chr12 109625158 109625279 -34657210 - L2 LINE L2 -1890 1424 1299 193 361 16 0 chr12 109625373 109625434 -34657055 + L2 LINE L2 326 387 -2927 216 231 31 31 chr12 109625549 109625614 -34656875 - L2 LINE L2 0 3313 3249 1722 198 3 16 chr12 109626143 109626466 -34656023 - MLT1C LTR MaLR 0 467 149 2312 97 3 0 chr12 109627684 109627983 -34654506 - AluY SINE Alu -4 307 8 40180 70 8 2 chr12 109628262 109634358 -34648131 - L1PA5 LINE L1 -20 6134 1 291 254 42 0 chr12 109634815 109634886 -34647603 - MIR SINE MIR -63 145 72 302 29 0 0 chr12 109636607 109636642 -34645847 - U2 snRNA snRNA -153 35 1 8394 28 2 1 chr12 109636702 109638310 -34644179 + L1PA3 LINE L1 4390 6000 -155 4483 131 27 34 chr12 109638412 109639226 -34643263 - Tigger3b DNA MER2_type -422 809 2 2486 40 0 10 chr12 109639330 109639629 -34642860 + AluY SINE Alu 1 296 -15 331 278 67 33 chr12 109640707 109640887 -34641602 + L1MEd LINE L1 1 186 -5933 560 289 134 9 chr12 109640985 109641321 -34641168 + L1M4 LINE L1 3961 4338 -1808 22 56 0 0 chr12 109641338 109641374 -34641115 + AT_rich Low_complexity Low_complexity 1 36 0 259 361 49 21 chr12 109641905 109642049 -34640440 - MER5B DNA MER1_type -6 172 25 298 286 107 0 chr12 109642254 109642338 -34640151 - MIR SINE MIR -148 114 22 365 289 37 44 chr12 109642720 109642855 -34639634 + MIR SINE MIR 60 193 -69 251 308 93 9 chr12 109643584 109643691 -34638798 + MIR3 SINE MIR 91 206 -2 2336 84 7 3 chr12 109643728 109644027 -34638462 - AluSq SINE Alu -13 300 1 180 111 0 0 chr12 109644481 109644508 -34637981 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 332 333 53 20 chr12 109645068 109645218 -34637271 - MIR SINE MIR -85 177 23 33 0 0 0 chr12 109645233 109645266 -34637223 + AT_rich Low_complexity Low_complexity 1 33 0 200 334 158 41 chr12 109645314 109645682 -34636807 + L2 LINE L2 2562 2972 -342 335 389 89 0 chr12 109645753 109645910 -34636579 + L2 LINE L2 3102 3272 0 259 213 40 0 chr12 109646563 109646638 -34635851 - L1ME4a LINE L1 -11 6110 6033 298 337 54 33 chr12 109646767 109646951 -34635538 - MIR SINE MIR -10 252 65 1125 259 65 19 chr12 109647124 109647494 -34634995 - MLT1B LTR MaLR 0 390 4 1088 213 7 69 chr12 109648166 109648457 -34634032 + AluJo SINE Alu 1 273 -39 197 344 0 0 chr12 109648952 109649016 -34633473 + L2 LINE L2 3246 3309 -4 864 132 211 0 chr12 109649080 109649232 -34633257 - Tigger3(Golem) DNA MER2_type -1 3028 2845 29 28 0 0 chr12 109649496 109649532 -34632957 + AT_rich Low_complexity Low_complexity 1 36 0 811 287 134 27 chr12 109649565 109650042 -34632447 + MLT1H LTR MaLR 22 549 0 790 310 120 30 chr12 109650048 109650516 -34631973 + L2 LINE L2 2804 3313 0 795 215 138 13 chr12 109650590 109650912 -34631577 - MLT1D LTR MaLR -12 487 81 7345 183 25 7 chr12 109650924 109653270 -34629219 + L1PA16 LINE L1 3678 6063 -103 254 53 105 0 chr12 109653277 109653315 -34629174 + L1PA16 LINE L1 6116 6157 -9 28 0 0 0 chr12 109653315 109653343 -34629146 + AT_rich Low_complexity Low_complexity 1 28 0 276 209 60 0 chr12 109653343 109653410 -34629079 - MLT1D LTR MaLR -432 73 3 348 302 151 0 chr12 109653467 109653606 -34628883 + MIR SINE MIR 92 251 -11 520 246 288 5 chr12 109653617 109653808 -34628681 - MIR SINE MIR -5 257 13 1747 162 7 28 chr12 109653861 109654151 -34628338 + AluJb SINE Alu 1 284 -28 1642 189 0 26 chr12 109654176 109654488 -34628001 + AluJb SINE Alu 1 304 -8 209 200 92 46 chr12 109654925 109654990 -34627499 + L2 LINE L2 3190 3257 -56 * 1336 285 86 23 chr12 109654984 109655617 -34626872 + L2 LINE L2 2647 3304 -9 2085 128 0 3 chr12 109655617 109655915 -34626574 + AluSx SINE Alu 3 299 -13 802 153 0 0 chr12 109656379 109656497 -34625992 - MER3 DNA MER1_type -91 118 1 501 278 6 41 chr12 109656616 109656785 -34625704 - L2 LINE L2 -1 3312 3150 688 149 18 0 chr12 109657658 109657772 -34624717 + FRAM SINE Alu 36 151 -25 236 228 61 61 chr12 109657983 109658097 -34624392 + L1M4 LINE L1 4723 4836 -1310 6274 126 60 44 chr12 109658260 109659471 -34623018 - Tigger3b DNA MER2_type 0 1231 2 37 39 0 0 chr12 109659495 109659546 -34622943 + AT_rich Low_complexity Low_complexity 1 51 0 1062 224 122 0 chr12 109659632 109659936 -34622553 + MER2 DNA MER2_type 1 341 -3 256 174 51 92 chr12 109659945 109660043 -34622446 + L1ME4a LINE L1 5991 6084 -37 1775 176 17 7 chr12 109660187 109660489 -34622000 - 7SLRNA srpRNA srpRNA -15 305 1 2551 39 3 0 chr12 109660671 109660981 -34621508 + AluY SINE Alu 1 311 0 338 344 120 53 chr12 109664159 109665265 -34617224 - L2 LINE L2 -384 2930 1751 509 277 147 98 chr12 109665278 109665878 -34616611 + L2 LINE L2 2138 2766 -548 200 305 144 0 chr12 109666268 109666386 -34616103 - L2 LINE L2 -669 2645 2511 428 331 13 51 chr12 109666608 109666765 -34615724 + MIR3 SINE MIR 34 184 -24 2550 88 11 45 chr12 109668378 109668755 -34613734 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr12 109669026 109669051 -34613438 + AT_rich Low_complexity Low_complexity 1 25 0 363 226 0 135 chr12 109669051 109669071 -34613418 - MIR SINE MIR -92 170 149 429 211 32 76 chr12 109669071 109669142 -34613347 + MER104 DNA MER2_type 3 76 -1822 2226 77 0 26 chr12 109669142 109669455 -34613034 - AluY SINE Alu -6 305 1 429 211 32 76 chr12 109669455 109669568 -34612921 + MER104 DNA MER2_type 76 179 -1 363 226 0 135 chr12 109669568 109669680 -34612809 - MIR SINE MIR -113 149 56 270 222 0 0 chr12 109669805 109669850 -34612639 - Tigger3b DNA MER2_type -1186 45 1 1296 213 33 33 chr12 109669949 109670250 -34612239 - MLT1A1 LTR MaLR 0 365 65 2138 169 24 45 chr12 109670250 109670670 -34611819 + MER47B DNA MER2_type 1 411 -7 363 88 18 18 chr12 109670683 109670740 -34611749 - MLT1A1 LTR MaLR -371 57 1 244 286 14 0 chr12 109671432 109671502 -34610987 - L2 LINE L2 -1 3312 3242 25 31 0 0 chr12 109671509 109671541 -34610948 + AT_rich Low_complexity Low_complexity 1 32 0 1845 128 100 0 chr12 109672016 109672297 -34610192 + AluSx SINE Alu 1 309 -3 190 300 157 0 chr12 109672307 109672377 -34610112 + L3b LINE CR1 1365 1445 -138 23 33 0 0 chr12 109672377 109672407 -34610082 + AT_rich Low_complexity Low_complexity 1 30 0 1082 112 0 6 chr12 109672415 109672576 -34609913 - L1MA2 LINE L1 -3 6301 6142 268 296 99 0 chr12 109672701 109672782 -34609707 - MIR3 SINE MIR -41 167 79 4747 177 31 26 chr12 109673448 109673884 -34608605 - L1 LINE L1 -2189 3957 3525 1954 137 17 0 chr12 109673884 109674177 -34608312 - AluSx SINE Alu -14 298 1 4747 177 31 26 chr12 109674177 109674792 -34607697 - L1 LINE L1 -2621 3525 2900 21 0 0 0 chr12 109676131 109676152 -34606337 + AT_rich Low_complexity Low_complexity 1 21 0 336 286 64 58 chr12 109676837 109677369 -34605120 + L1ME LINE L1 612 1151 -4919 779 213 112 0 chr12 109677569 109677757 -34604732 + MER3 DNA MER1_type 1 209 0 428 97 0 14 chr12 109678310 109678382 -34604107 - L1MA3 LINE L1 -5 6300 6230 394 231 37 19 chr12 109678512 109678620 -34603869 - L2 LINE L2 0 3313 3204 363 303 68 41 chr12 109678977 109679198 -34603291 - L2 LINE L2 -102 3211 2985 212 347 45 20 chr12 109679264 109679444 -34603045 - MIR SINE MIR 0 262 23 405 295 145 12 chr12 109680508 109680674 -34601815 - MIR SINE MIR -55 207 20 1011 256 27 4 chr12 109680722 109680984 -34601505 - L3 LINE CR1 -628 949 682 34 24 0 0 chr12 109681180 109681221 -34601268 + AT_rich Low_complexity Low_complexity 1 41 0 30 59 0 0 chr12 109681544 109681595 -34600894 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr12 109681898 109681926 -34600563 + AT_rich Low_complexity Low_complexity 1 28 0 1893 274 102 58 chr12 109686738 109687801 -34594688 - L1ME LINE L1 -414 5748 4733 1072 172 48 26 chr12 109687801 109688028 -34594461 - MER46A DNA MER2_type -3 233 2 1893 274 102 58 chr12 109688028 109689181 -34593308 - L1ME LINE L1 -1429 4733 3383 2266 107 0 3 chr12 109689410 109689720 -34592769 + AluSx SINE Alu 1 309 -3 3410 196 64 51 chr12 109690602 109691487 -34591002 - L1ME2 LINE L1 0 6164 5268 2161 207 122 35 chr12 109691526 109692092 -34590397 + MLT2F LTR ERVL 48 662 -1 688 229 13 0 chr12 109692092 109692249 -34590240 + L1M4 LINE L1 3623 3781 -2365 761 287 92 4 chr12 109692363 109692635 -34589854 - L2 LINE L2 -1345 1969 1674 333 0 0 0 chr12 109692983 109693020 -34589469 + (TG)n Simple_repeat Simple_repeat 1 37 0 2021 125 0 26 chr12 109693837 109694142 -34588347 + AluSx SINE Alu 1 297 -15 34041 39 36 2 chr12 109744567 109748830 -34533659 - L1P LINE L1 -1736 4410 1 4524 154 73 45 chr12 109748830 109749850 -34532639 + MER57-int LTR ERV1 3014 4041 -1905 4491 105 26 4 chr12 109749841 109751018 -34531471 + MER57-int LTR ERV1 5307 6547 -990 * 1376 127 26 9 chr12 109751022 109751250 -34531239 + MER57B LTR ERV1 203 434 0 327 261 109 0 chr12 109751251 109751370 -34531119 - L1M4b LINE L1 -6314 545 414 296 213 85 21 chr12 109752586 109752680 -34529809 + MLT1I LTR MaLR 307 406 -3 217 163 23 0 chr12 109753295 109753338 -34529151 + GA-rich Low_complexity Low_complexity 1 44 0 198 0 0 0 chr12 109753457 109753479 -34529010 + (TG)n Simple_repeat Simple_repeat 1 22 0 475 74 25 0 chr12 109753479 109753560 -34528929 + (GA)n Simple_repeat Simple_repeat 2 84 0 23 0 0 0 chr12 109753804 109753827 -34528662 + AT_rich Low_complexity Low_complexity 1 23 0 225 186 186 0 chr12 109754176 109754262 -34528227 + L1MD1 LINE L1 5849 5950 -292 734 333 156 46 chr12 109754540 109755060 -34527429 + L3 LINE CR1 931 1507 -70 575 275 94 6 chr12 109755152 109755323 -34527166 + MIR SINE MIR 8 193 -69 447 224 10 0 chr12 109756545 109756643 -34525846 - MLT1I LTR MaLR -2 407 309 1583 112 27 0 chr12 109756681 109756904 -34525585 + MER30 DNA MER1_type 2 230 0 1676 144 74 0 chr12 109758453 109758737 -34523752 + AluSx SINE Alu 2 306 -6 572 125 0 100 chr12 109758768 109758888 -34523601 + MER50 LTR ERV1 497 604 -130 215 320 77 81 chr12 109759062 109759296 -34523193 - L2 LINE L2 -173 3099 2867 313 214 51 61 chr12 109759371 109759469 -34523020 + MIR SINE MIR 100 196 -66 772 191 7 0 chr12 109759817 109759953 -34522536 - MSTC LTR MaLR 0 428 292 206 121 0 52 chr12 109759953 109760011 -34522478 + (T)n Simple_repeat Simple_repeat 1 55 0 3232 34 0 3 chr12 109760012 109760396 -34522093 - L1PA3 LINE L1 -3 6152 5770 1276 153 48 35 chr12 109760396 109760625 -34521864 - MSTC LTR MaLR -137 291 60 2262 117 13 61 chr12 109760625 109761019 -34521470 + THE1C LTR MaLR 1 375 0 3441 90 73 85 chr12 109761019 109761632 -34520857 + THE1C-int LTR MaLR 1 606 -974 2333 111 0 3 chr12 109761652 109761976 -34520513 + THE1C LTR MaLR 50 372 -3 275 153 203 0 chr12 109761979 109762038 -34520451 - MSTC LTR MaLR -386 71 1 347 349 121 0 chr12 109762941 109763090 -34519399 - L2 LINE L2 -4 3268 3102 609 168 0 168 chr12 109763219 109763386 -34519103 - HERVL LTR ERVL -2609 3045 2907 535 226 98 64 chr12 109763549 109763784 -34518705 - LTR33 LTR ERVL 0 521 279 6434 178 32 12 chr12 109763793 109765607 -34516882 + ERVL LTR ERVL 1750 3647 -2117 1042 241 58 108 chr12 109765610 109765981 -34516508 - MSTB2 LTR MaLR -2 455 110 1898 184 3 0 chr12 109765981 109766290 -34516199 - AluJb SINE Alu -2 310 1 1042 241 58 108 chr12 109766290 109766382 -34516107 - MSTB2 LTR MaLR -347 110 15 1409 143 17 77 chr12 109766385 109766718 -34515771 + ERVL LTR ERVL 3604 5032 -732 1302 234 9 102 chr12 109766718 109767159 -34515330 + MLT2B1 LTR ERVL 121 520 0 1813 185 43 45 chr12 109767163 109767703 -34514786 + MLT1-int LTR MaLR 5 654 -1081 232 292 0 0 chr12 109767709 109767774 -34514715 + MLT1-int LTR MaLR 820 884 -487 230 286 16 0 chr12 109767834 109767897 -34514592 + MLT-int LTR MaLR 676 739 -996 2218 205 24 20 chr12 109767983 109768476 -34514013 + MLT1B-int LTR MaLR 880 1735 0 315 200 0 15 chr12 109768479 109768544 -34513945 + MLT1B LTR MaLR 4 67 -307 430 252 7 34 chr12 109768657 109768804 -34513685 + MLT1B LTR MaLR 248 390 0 2403 250 88 27 chr12 109768813 109770375 -34512114 - L1MEc LINE L1 -3518 3423 1807 2374 166 23 64 chr12 109770423 109770940 -34511549 - MLT1D LTR MaLR -1 504 9 1304 221 130 39 chr12 109770975 109771436 -34511053 + MLT1D LTR MaLR 3 505 0 2102 257 50 26 chr12 109771436 109772137 -34510352 - L1MEc LINE L1 -4897 1526 809 2642 35 0 16 chr12 109772554 109772868 -34509621 + AluY SINE Alu 1 309 -2 1112 282 49 3 chr12 109772913 109773299 -34509190 - L1MEc LINE L1 -5948 475 72 1095 313 23 67 chr12 109773466 109774031 -34508458 + L2 LINE L2 2330 2869 -445 1605 184 3 27 chr12 109774504 109774797 -34507692 - AluJo SINE Alu -19 293 8 207 186 0 0 chr12 109774817 109774860 -34507629 + CT-rich Low_complexity Low_complexity 2 44 0 215 299 11 46 chr12 109774979 109775066 -34507423 - L2 LINE L2 0 3272 3189 237 287 11 53 chr12 109775269 109775363 -34507126 + MIR SINE MIR 59 148 -114 1837 172 7 0 chr12 109775884 109776186 -34506303 - AluJo SINE Alu -8 304 1 363 223 117 11 chr12 109776306 109776400 -34506089 - MIR SINE MIR -58 150 47 216 143 0 0 chr12 109776678 109776720 -34505769 + (CA)n Simple_repeat Simple_repeat 1 42 0 21 36 0 0 chr12 109776751 109776779 -34505710 + AT_rich Low_complexity Low_complexity 1 28 0 595 259 36 0 chr12 109776872 109777011 -34505478 + MER63 DNA MER1_type 1 770 -66 1525 153 50 11 chr12 109777875 109778156 -34504333 - AluJo SINE Alu -16 296 5 2299 98 0 16 chr12 109778359 109778674 -34503815 + AluSq SINE Alu 1 310 -3 839 268 77 9 chr12 109779099 109779319 -34503170 - MIR SINE MIR 0 262 28 1629 128 16 4 chr12 109779816 109780089 -34502400 - AluSx SINE Alu 0 313 38 2426 69 0 0 chr12 109780662 109780965 -34501524 + AluY SINE Alu 1 303 -8 850 271 192 21 chr12 109781105 109781621 -34500868 - L1MC4a LINE L1 -1892 5916 5313 385 304 57 13 chr12 109781622 109781780 -34500709 - L1MC4a LINE L1 -855 5291 5127 331 329 56 0 chr12 109782671 109782814 -34499675 - Charlie8 DNA MER1_type -1205 1212 1062 1127 302 81 12 chr12 109782971 109783554 -34498935 - L1ME2 LINE L1 -272 5892 5270 830 254 71 0 chr12 109783661 109783901 -34498588 + MIR SINE MIR 5 261 -1 28 79 0 0 chr12 109783993 109784056 -34498433 + AT_rich Low_complexity Low_complexity 1 63 0 591 318 95 46 chr12 109784301 109784848 -34497641 - HAL1b LINE L1 -767 581 8 292 257 104 14 chr12 109784885 109785029 -34497460 - HAL1 LINE L1 -856 1651 1495 2582 220 33 18 chr12 109785059 109785282 -34497207 - MER74A LTR ERVL 0 558 340 2009 203 20 70 chr12 109785282 109785825 -34496664 - MLT2B1 LTR ERVL 0 520 5 2582 220 33 18 chr12 109785825 109786151 -34496338 - MER74A LTR ERVL -218 340 1 1020 307 52 31 chr12 109786161 109787036 -34495453 - L1MEd LINE L1 -4868 1251 452 1743 173 13 3 chr12 109787371 109787677 -34494812 - AluJb SINE Alu -3 309 1 335 366 35 39 chr12 109787770 109788024 -34494465 - HAL1b LINE L1 -955 393 141 22 103 0 0 chr12 109788270 109788348 -34494141 + AT_rich Low_complexity Low_complexity 1 78 0 3184 162 14 0 chr12 109788376 109788894 -34493595 - LTR45 LTR ERV1 0 525 1 25 90 0 0 chr12 109788918 109788985 -34493504 + AT_rich Low_complexity Low_complexity 1 67 0 22 0 0 0 chr12 109789232 109789254 -34493235 + AT_rich Low_complexity Low_complexity 1 22 0 319 321 179 0 chr12 109789376 109789482 -34493007 - L2 LINE L2 -4 3268 3144 264 59 0 0 chr12 109789516 109789550 -34492939 + (TC)n Simple_repeat Simple_repeat 1 34 0 4640 107 26 45 chr12 109789609 109790343 -34492146 - Tigger3(Golem) DNA MER2_type 0 3028 2310 3115 66 22 50 chr12 109790343 109790800 -34491689 - MLT2A1 LTR ERVL 0 444 1 4640 107 26 45 chr12 109790800 109790885 -34491604 - Tigger3(Golem) DNA MER2_type -718 2310 2225 529 171 0 0 chr12 109790883 109790965 -34491524 - Tigger3(Golem) DNA MER2_type -2947 82 1 * 655 257 104 25 chr12 109793227 109793468 -34489021 + MIR SINE MIR 3 262 0 395 375 29 76 chr12 109793471 109793746 -34488743 - L2 LINE L2 -9 3263 3002 1977 156 56 9 chr12 109793754 109794150 -34488339 + MSTB1 LTR MaLR 16 374 0 713 335 47 53 chr12 109794176 109794708 -34487781 - L2 LINE L2 -395 2919 2391 530 277 53 10 chr12 109794792 109795132 -34487357 + MLT1K LTR MaLR 91 472 -116 2163 87 3 13 chr12 109795164 109795473 -34487016 - L1PA10 LINE L1 0 6168 5863 411 233 0 0 chr12 109795473 109795563 -34486926 - L1ME LINE L1 -558 5606 5517 * 12375 174 5 2 chr12 109795559 109797968 -34484521 - L1P3 LINE L1 -2553 3908 1495 6482 32 1 0 chr12 109797982 109798787 -34483702 - L1PA4 LINE L1 -1 6154 5349 3930 214 44 59 chr12 109798787 109799473 -34483016 - L1P3 LINE L1 -4735 1140 445 2053 107 55 60 chr12 109799473 109799839 -34482650 + THE1B LTR MaLR 1 364 0 11917 93 2 1 chr12 109799839 109801416 -34481073 + THE1B-int LTR MaLR 1 1580 0 2176 109 48 31 chr12 109801416 109801774 -34480715 + THE1B LTR MaLR 1 364 0 3930 214 44 59 chr12 109801774 109801919 -34480570 - L1P3 LINE L1 -5428 447 301 180 0 0 0 chr12 109801919 109801939 -34480550 + (CTGTG)n Simple_repeat Simple_repeat 1 20 0 3930 214 44 59 chr12 109801939 109802517 -34479972 - L1P3 LINE L1 -5574 301 2 262 336 16 48 chr12 109802618 109802743 -34479746 - L2 LINE L2 -925 2389 2269 1885 205 94 5 chr12 109802980 109803428 -34479061 + MLT1D LTR MaLR 1 488 -17 1375 189 31 25 chr12 109803543 109803903 -34478586 - L1MB8 LINE L1 -3 6986 6625 1363 151 125 0 chr12 109803907 109804139 -34478350 - AluJb SINE Alu -26 286 26 1418 186 11 0 chr12 109804216 109804485 -34478004 - L1MB8 LINE L1 -492 6497 6226 1806 166 22 67 chr12 109804494 109804898 -34477591 + MLT1B LTR MaLR 2 387 -3 1961 213 36 15 chr12 109804904 109805510 -34476979 - L1MB8 LINE L1 -743 6214 5596 12259 199 31 46 chr12 109805512 109807639 -34474850 - L1PB4 LINE L1 -21 6192 4033 274 98 0 0 chr12 109807639 109807680 -34474809 - MER41A LTR ERV1 -114 440 400 12259 199 31 46 chr12 109807680 109809692 -34472797 - L1PB4 LINE L1 -2180 4033 1906 738 163 7 15 chr12 109809692 109809827 -34472662 + FLAM_C SINE Alu 9 142 -1 12259 199 31 46 chr12 109809827 109811026 -34471463 - L1PB4 LINE L1 -4307 1906 690 257 305 0 0 chr12 109811006 109811088 -34471401 - L1PA15-16 LINE L1 -5280 1569 1488 * 1550 270 31 15 chr12 109811098 109811926 -34470563 - L1MB8 LINE L1 -3536 3421 2625 507 271 82 33 chr12 109812121 109812619 -34469870 - L1M2 LINE L1 -4242 2141 1445 2714 256 69 48 chr12 109812642 109813661 -34468828 - L1MB8 LINE L1 -5276 1583 544 2072 135 52 6 chr12 109813661 109814009 -34468480 + THE1B LTR MaLR 1 364 0 2739 110 46 5 chr12 109814015 109814432 -34468057 + MER57B LTR ERV1 1 434 0 4331 121 20 5 chr12 109814432 109815094 -34467395 + MER57B-int LTR ERV1 1 672 -6865 4042 153 68 23 chr12 109815091 109815811 -34466678 + MER41-int LTR ERV1 288 975 -3905 * 2492 92 0 3 chr12 109815811 109816125 -34466364 + AluSq SINE Alu 1 313 0 4042 153 68 23 chr12 109816125 109816726 -34465763 + MER41-int LTR ERV1 975 1942 -2938 784 101 109 7 chr12 109816721 109816859 -34465630 + MER41-int LTR ERV1 1866 2017 -3929 * 251 106 64 0 chr12 109816855 109816902 -34465587 + MER41-int LTR ERV1 2167 2216 -3730 * 2890 112 44 19 chr12 109816887 109817566 -34464923 + MER41-int LTR ERV1 3336 4162 -3654 7800 13 21 1 chr12 109817583 109819285 -34463204 - L1PA2 LINE L1 -7 6148 4429 539 191 51 130 chr12 109819868 109820352 -34462137 + MLT1G1 LTR MaLR 13 592 -3 3367 217 34 28 chr12 109821191 109821980 -34460509 - L1ME1 LINE L1 -5 6161 5360 1727 157 146 29 chr12 109821980 109822363 -34460126 + MSTA LTR MaLR 1 428 0 3367 217 34 28 chr12 109822363 109822570 -34459919 - L1ME1 LINE L1 -806 5360 5156 410 329 155 18 chr12 109823764 109823983 -34458506 + MIR SINE MIR 12 260 -2 183 321 119 0 chr12 109824228 109824337 -34458152 - MIR SINE MIR -63 145 24 279 313 0 0 chr12 109825359 109825426 -34457063 + L2 LINE L2 3201 3267 -5 810 229 6 12 chr12 109826025 109826195 -34456294 - MER5A DNA MER1_type -3 186 18 1963 176 35 39 chr12 109827445 109827999 -34454490 - MLT2A2 LTR ERVL 0 554 1 2311 252 9 14 chr12 109828086 109828597 -34453892 + MLT2B3 LTR ERVL 6 515 -39 465 66 0 0 chr12 109828597 109828658 -34453831 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2311 252 9 14 chr12 109828658 109828698 -34453791 + MLT2B3 LTR ERVL 515 554 0 1407 289 140 12 chr12 109828739 109829701 -34452788 - L2 LINE L2 -2 3311 2214 21 0 0 0 chr12 109829912 109829933 -34452556 + AT_rich Low_complexity Low_complexity 1 21 0 2034 117 15 35 chr12 109830188 109830531 -34451958 - THE1C LTR MaLR -2 373 38 8651 123 46 42 chr12 109830531 109832052 -34450437 - THE1C-int LTR MaLR -53 1527 1 2048 132 20 14 chr12 109832064 109832413 -34450076 - THE1C LTR MaLR -24 351 1 316 317 35 7 chr12 109832415 109832560 -34449929 + MARNA DNA Mariner 364 512 -74 190 260 42 83 chr12 109832591 109832687 -34449802 - L2 LINE L2 0 3313 3222 189 0 0 0 chr12 109832767 109832788 -34449701 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 274 271 0 14 chr12 109834427 109834497 -34447992 - MIR SINE MIR -6 256 188 2059 133 95 18 chr12 109834731 109835122 -34447367 - MSTA LTR MaLR 0 428 8 1147 222 47 11 chr12 109835286 109835620 -34446869 + MLT1I LTR MaLR 63 409 0 720 279 45 20 chr12 109835727 109835928 -34446561 + MIR SINE MIR 5 210 -52 263 179 54 0 chr12 109836026 109836082 -34446407 + MIR3 SINE MIR 147 205 -3 872 194 5 43 chr12 109838142 109838353 -34444136 - MSTD LTR MaLR 0 396 194 504 153 16 8 chr12 109838353 109838477 -34444012 + GA-rich Low_complexity Low_complexity 2 126 0 23 0 0 0 chr12 109838492 109838515 -34443974 + AT_rich Low_complexity Low_complexity 1 23 0 777 171 8 1 chr12 109838557 109838700 -34443789 - MSTD LTR MaLR -264 132 4 342 240 87 19 chr12 109838701 109838805 -34443684 + MIR SINE MIR 68 178 -84 3349 89 13 0 chr12 109839174 109839621 -34442868 + MLT2A2 LTR ERVL 1 453 0 852 245 185 79 chr12 109840066 109840498 -34441991 + LTR33A LTR ERVL 46 523 0 445 323 48 48 chr12 109840965 109841194 -34441295 + LTR67 LTR ERVL 250 478 -79 911 333 86 25 chr12 109841417 109842090 -34440399 + ERVL LTR ERVL 4115 4828 -936 470 297 108 26 chr12 109842179 109842522 -34439967 + ERVL LTR ERVL 4967 5337 -427 1029 281 110 20 chr12 109842634 109843158 -34439331 + L2 LINE L2 2737 3311 -2 243 221 7 147 chr12 109844487 109844623 -34437866 + MER21B LTR ERV1 194 310 -553 * 788 246 148 11 chr12 109844590 109844874 -34437615 + MER77 LTR ERV1 277 599 -6 2439 104 3 6 chr12 109845442 109845787 -34436702 - THE1C LTR MaLR 0 375 32 230 80 260 0 chr12 109845798 109845848 -34436641 - THE1C LTR MaLR -312 63 1 10075 109 31 41 chr12 109845848 109847445 -34435044 - THE1C-int LTR MaLR 0 1580 1 2016 106 3 7 chr12 109847445 109847737 -34434752 - THE1C LTR MaLR 0 375 85 3421 112 32 8 chr12 109847925 109848459 -34434030 + L1PA16 LINE L1 5615 6161 -5 288 0 0 0 chr12 109848509 109848541 -34433948 + (TG)n Simple_repeat Simple_repeat 1 32 0 393 75 0 0 chr12 109848744 109848797 -34433692 + (TG)n Simple_repeat Simple_repeat 2 54 0 2334 83 0 13 chr12 109849498 109849799 -34432690 + AluSx SINE Alu 1 297 -15 409 267 12 39 chr12 109849904 109850069 -34432420 + MER21B LTR ERV1 1 201 -404 * 1332 217 55 35 chr12 109850038 109850512 -34431977 + MER21B LTR ERV1 98 631 -232 218 318 68 0 chr12 109851120 109851208 -34431281 - MIR SINE MIR -66 142 49 441 0 0 0 chr12 109851857 109851906 -34430583 + (TG)n Simple_repeat Simple_repeat 1 49 0 230 339 181 0 chr12 109852012 109852139 -34430350 - MIR SINE MIR -6 256 107 2420 96 0 3 chr12 109852604 109852916 -34429573 + AluSq SINE Alu 1 311 -2 642 253 97 5 chr12 109853175 109853361 -34429128 + AluJo SINE Alu 1 203 -109 2338 62 0 0 chr12 109853461 109853736 -34428753 + AluY SINE Alu 21 295 -16 203 357 111 25 chr12 109853786 109854021 -34428468 + L2 LINE L2 2908 3162 -110 212 184 0 0 chr12 109854844 109854882 -34427607 + A-rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr12 109855637 109855661 -34426828 + AT_rich Low_complexity Low_complexity 1 24 0 232 310 11 35 chr12 109856436 109856523 -34425966 - MIR SINE MIR -64 144 60 2043 98 0 4 chr12 109857992 109858258 -34424231 + AluSq SINE Alu 1 265 -48 2371 127 14 11 chr12 109859232 109859595 -34422894 + THE1B LTR MaLR 1 364 0 230 250 60 52 chr12 109859601 109859717 -34422772 - MER5A DNA MER1_type -5 184 68 23 0 0 0 chr12 109859717 109859740 -34422749 + AT_rich Low_complexity Low_complexity 1 23 0 484 294 117 86 chr12 109860067 109860456 -34422033 - L2 LINE L2 -1 3271 2871 398 323 12 30 chr12 109860456 109860620 -34421869 + MER5A DNA MER1_type 1 161 -28 640 200 39 61 chr12 109860637 109860817 -34421672 - MER5B DNA MER1_type 0 178 3 451 299 22 85 chr12 109861841 109862029 -34420460 - MIR3 SINE MIR -26 182 3 243 389 8 23 chr12 109862641 109862772 -34419717 + MIR3 SINE MIR 63 191 -17 184 343 0 55 chr12 109862788 109862861 -34419628 - L3 LINE CR1 -3 1574 1506 1222 224 72 17 chr12 109863053 109863414 -34419075 - L1ME3 LINE L1 -9 6153 5773 283 349 191 0 chr12 109863458 109863584 -34418905 + MIR3 SINE MIR 38 187 -21 274 223 43 0 chr12 109863640 109863734 -34418755 + L1M4 LINE L1 5232 5329 -817 448 269 15 8 chr12 109865005 109865135 -34417354 + MIR SINE MIR 117 247 -15 185 310 30 60 chr12 109865166 109865266 -34417223 - MIR SINE MIR -70 138 42 592 331 28 20 chr12 109866171 109866425 -34416064 + MIR SINE MIR 3 258 -4 285 29 0 0 chr12 109866457 109866491 -34415998 + (TG)n Simple_repeat Simple_repeat 1 34 0 473 243 9 36 chr12 109866617 109866728 -34415761 - L2 LINE L2 -9 3263 3156 1615 179 23 20 chr12 109869260 109869562 -34412927 - AluJb SINE Alu -9 303 1 406 319 86 62 chr12 109869566 109869904 -34412585 + L2 LINE L2 1310 1655 -1659 2584 90 0 13 chr12 109869904 109870280 -34412209 - L1PB1 LINE L1 0 6151 5781 200 163 23 23 chr12 109870280 109870323 -34412166 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 2825 177 7 2 chr12 109870323 109871991 -34410498 - L1PB1 LINE L1 -360 5791 4010 187 350 138 12 chr12 109871991 109872237 -34410252 + L2 LINE L2 1644 1920 -1394 4911 171 36 2 chr12 109872307 109873549 -34408940 - L1MCa LINE L1 -5080 1346 21 1600 185 40 61 chr12 109873589 109874065 -34408424 - MLT1C LTR MaLR -1 466 1 316 291 50 50 chr12 109874133 109874312 -34408177 - L2 LINE L2 -768 2546 2368 493 281 97 40 chr12 109874344 109874572 -34407917 + MIR SINE MIR 1 241 -21 1216 146 64 39 chr12 109875084 109875364 -34407125 - MER33 DNA MER1_type 0 324 38 222 289 105 0 chr12 109875735 109875811 -34406678 + L2 LINE L2 3184 3267 -5 231 293 0 0 chr12 109876774 109876832 -34405657 + tRNA-Ile-ATT tRNA tRNA 17 74 -3 1357 75 0 21 chr12 109878359 109878545 -34403944 + L1PA7 LINE L1 5973 6154 0 209 227 0 0 chr12 109878629 109878673 -34403816 + (TAA)n Simple_repeat Simple_repeat 1 44 0 282 323 124 12 chr12 109879041 109879202 -34403287 - MIR SINE MIR -74 188 10 1041 268 93 38 chr12 109879213 109879280 -34403209 - LTR33A LTR ERVL 0 523 461 1669 144 9 92 chr12 109879280 109879606 -34402883 - AluJo SINE Alu -7 305 7 1041 268 93 38 chr12 109879606 109880034 -34402455 - LTR33A LTR ERVL -62 461 1 1950 205 73 15 chr12 109881039 109881585 -34400904 - MER20B DNA MER1_type 0 783 206 648 308 30 17 chr12 109882270 109882507 -34399982 + MIR SINE MIR 13 252 -10 21 0 0 0 chr12 109884126 109884147 -34398342 + AT_rich Low_complexity Low_complexity 1 21 0 2254 106 0 3 chr12 109884970 109885271 -34397218 + AluSg SINE Alu 1 300 -10 204 111 0 0 chr12 109886136 109886172 -34396317 + (A)n Simple_repeat Simple_repeat 1 36 0 216 97 0 0 chr12 109886828 109886859 -34395630 + (T)n Simple_repeat Simple_repeat 1 31 0 387 41 0 0 chr12 109887157 109887206 -34395283 + (TG)n Simple_repeat Simple_repeat 2 50 0 185 323 31 31 chr12 109887994 109888090 -34394399 + L2 LINE L2 3209 3304 -9 21 57 0 0 chr12 109888668 109888703 -34393786 + AT_rich Low_complexity Low_complexity 1 35 0 668 127 15 60 chr12 109889216 109889350 -34393139 - MIR SINE MIR -74 188 61 27 0 0 0 chr12 109890277 109890304 -34392185 + AT_rich Low_complexity Low_complexity 1 27 0 772 267 51 9 chr12 109891151 109891368 -34391121 + MIR SINE MIR 37 262 0 1656 156 3 49 chr12 109891513 109891821 -34390668 - AluJb SINE Alu -18 294 1 477 286 17 0 chr12 109891839 109891958 -34390531 + L2 LINE L2 3192 3312 -1 2272 94 0 3 chr12 109892795 109893094 -34389395 - AluSg SINE Alu 0 310 13 2171 106 3 3 chr12 109893126 109893437 -34389052 - AluSx SINE Alu 0 311 1 2455 96 0 3 chr12 109894861 109895173 -34387316 + AluSx SINE Alu 2 312 0 214 321 55 37 chr12 109895265 109895374 -34387115 - MIR SINE MIR -71 191 81 326 363 46 39 chr12 109895400 109895659 -34386830 - MIR SINE MIR 0 262 2 499 306 64 58 chr12 109896712 109897042 -34385447 + LTR16B LTR ERVL 122 453 -11 452 276 14 41 chr12 109897056 109897201 -34385288 + MIR SINE MIR 51 191 -71 364 289 59 37 chr12 109897372 109897507 -34384982 + L2 LINE L2 3132 3269 -3 460 343 85 8 chr12 109897680 109897916 -34384573 + MIR SINE MIR 8 261 -1 219 69 0 0 chr12 109900440 109900469 -34382020 + (CA)n Simple_repeat Simple_repeat 1 29 0 349 380 21 5 chr12 109901929 109902121 -34380368 - L3 LINE CR1 -1 1576 1382 189 265 29 44 chr12 109902133 109902201 -34380288 - MIR SINE MIR 0 262 196 263 102 0 20 chr12 109902228 109902277 -34380212 + (CA)n Simple_repeat Simple_repeat 1 48 0 805 258 32 0 chr12 109902279 109902465 -34380024 - MIR SINE MIR -70 192 1 2118 123 0 7 chr12 109902480 109902773 -34379716 - AluSx SINE Alu -21 291 1 192 231 0 0 chr12 109902820 109902859 -34379630 + L2 LINE L2 3254 3292 -21 558 29 0 0 chr12 109903288 109903356 -34379133 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 689 43 0 21 chr12 109903582 109903676 -34378813 + (TTCC)n Simple_repeat Simple_repeat 2 93 0 284 266 138 21 chr12 109904611 109904705 -34377784 + MIR3 SINE MIR 104 208 0 2075 169 15 57 chr12 109904828 109905235 -34377254 + MLT1B LTR MaLR 1 390 0 24 32 0 0 chr12 109905536 109905567 -34376922 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr12 109905607 109905632 -34376857 + AT_rich Low_complexity Low_complexity 1 25 0 555 288 52 34 chr12 109907108 109907341 -34375148 - MIR SINE MIR -21 241 5 411 282 16 24 chr12 109908225 109908349 -34374140 - MIR SINE MIR -116 146 24 576 262 30 18 chr12 109908373 109908541 -34373948 + MIR SINE MIR 80 249 -13 571 331 84 34 chr12 109910868 109911131 -34371358 + L3 LINE CR1 1295 1570 -7 261 0 0 0 chr12 109911309 109911338 -34371151 + (A)n Simple_repeat Simple_repeat 1 29 0 24 0 0 0 chr12 109911492 109911516 -34370973 + AT_rich Low_complexity Low_complexity 1 24 0 696 242 104 22 chr12 109914207 109914438 -34368051 + MIR SINE MIR 13 262 0 203 208 14 56 chr12 109914876 109914948 -34367541 + CT-rich Low_complexity Low_complexity 2 70 0 205 152 0 0 chr12 109915871 109915904 -34366585 + GA-rich Low_complexity Low_complexity 2 34 0 197 346 67 0 chr12 109916122 109916226 -34366263 + MIR3 SINE MIR 70 180 -28 504 301 36 15 chr12 109919466 109919662 -34362827 - MIR SINE MIR -3 259 60 827 283 31 21 chr12 109920201 109920491 -34361998 - L1ME4a LINE L1 -218 5903 5611 225 215 54 75 chr12 109920727 109920820 -34361669 - HSATI Satellite Satellite -220 357 267 584 40 54 0 chr12 109920821 109920895 -34361594 + L1PA4 LINE L1 6067 6144 -11 318 26 0 0 chr12 109920897 109920936 -34361553 + (CATA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr12 109920939 109920967 -34361522 + AT_rich Low_complexity Low_complexity 1 28 0 231 309 15 0 chr12 109921298 109921366 -34361123 - L2 LINE L2 -24 3289 3221 182 286 0 0 chr12 109921656 109921698 -34360791 + L2 LINE L2 3141 3182 -90 287 307 114 9 chr12 109921867 109921981 -34360508 + MIR SINE MIR 117 242 -20 256 271 29 0 chr12 109922041 109922111 -34360378 + MIR SINE MIR 4 75 -187 7151 18 11 6 chr12 109922198 109923019 -34359470 - L1PA2 LINE L1 0 6155 5331 23 54 0 0 chr12 109923047 109923084 -34359405 + AT_rich Low_complexity Low_complexity 1 37 0 733 163 7 48 chr12 109923095 109923242 -34359247 - MER2 DNA MER2_type -139 206 66 220 273 182 0 chr12 109923243 109923353 -34359136 + MIR SINE MIR 70 199 -63 204 183 197 56 chr12 109923594 109923665 -34358824 - MIR SINE MIR -85 177 97 727 247 7 7 chr12 109923812 109923966 -34358523 - MER5A DNA MER1_type -1 188 35 28 0 0 0 chr12 109924742 109924770 -34357719 + AT_rich Low_complexity Low_complexity 1 28 0 709 120 8 0 chr12 109925446 109925563 -34356926 - L1 LINE L1 -938 5208 5091 2558 129 15 2 chr12 109925572 109925966 -34356523 + L1MA6 LINE L1 5896 6294 -6 404 290 85 77 chr12 109926885 109927157 -34355332 + L2 LINE L2 3027 3300 -13 668 309 141 29 chr12 109927731 109928149 -34354340 + L3b LINE CR1 1108 1572 -11 464 344 16 16 chr12 109928436 109928622 -34353867 - MIR3 SINE MIR -7 201 16 228 309 111 39 chr12 109928715 109928896 -34353593 + MIR3 SINE MIR 14 207 -1 192 333 78 14 chr12 109929307 109929448 -34353041 + L2 LINE L2 2416 2565 -749 570 329 0 0 chr12 109929765 109929923 -34352566 - MIR SINE MIR -58 204 47 1874 187 3 0 chr12 109929956 109930297 -34352192 - AluJb SINE Alu 0 343 2 287 286 100 21 chr12 109930898 109931038 -34351451 - MIR SINE MIR -2 260 110 1196 279 71 55 chr12 109931173 109931650 -34350839 + MLT1J LTR MaLR 3 487 -24 2061 128 3 10 chr12 109931858 109932176 -34350313 - AluSx SINE Alu 0 312 1 223 125 50 0 chr12 109932566 109932606 -34349883 - L2 LINE L2 -5 3308 3267 183 419 52 26 chr12 109932742 109932897 -34349592 - L2 LINE L2 -15 3257 3099 19725 92 9 1 chr12 109933018 109935768 -34346721 - L1PA7 LINE L1 -1225 4921 2150 2643 90 5 0 chr12 109935764 109936140 -34346349 + L1PA7 LINE L1 4934 5315 -836 * 5502 13 2 0 chr12 109936139 109936752 -34345737 + L1HS LINE L1 5542 6155 0 6859 73 8 0 chr12 109936752 109937603 -34344886 + L1PA7 LINE L1 5293 6153 -1 366 229 19 57 chr12 109939769 109939810 -34342679 + L2 LINE L2 3199 3240 -73 2130 135 66 33 chr12 109939810 109940030 -34342459 + THE1C LTR MaLR 1 239 -136 2879 13 0 0 chr12 109940030 109940340 -34342149 + AluY SINE Alu 1 310 -1 2130 135 66 33 chr12 109940340 109940482 -34342007 + THE1C LTR MaLR 239 375 0 366 229 19 57 chr12 109940482 109940545 -34341944 + L2 LINE L2 3240 3299 -14 247 362 35 17 chr12 109941460 109941576 -34340913 - L2 LINE L2 0 3272 3155 892 254 31 9 chr12 109941832 109942056 -34340433 + MIR SINE MIR 33 261 -1 414 0 0 0 chr12 109944271 109944317 -34338172 + (TG)n Simple_repeat Simple_repeat 2 47 0 320 290 19 28 chr12 109947136 109947243 -34335246 - Charlie8 DNA MER1_type -2311 106 1 241 316 51 32 chr12 109948124 109948282 -34334207 - Charlie8 DNA MER1_type -2228 189 29 210 341 80 11 chr12 109949084 109949172 -34333317 - MIR SINE MIR -85 123 30 189 281 185 37 chr12 109950007 109950142 -34332347 + MER5A DNA MER1_type 7 161 -28 384 317 35 14 chr12 109951897 109952039 -34330450 + MIR3 SINE MIR 57 201 -7 415 259 74 7 chr12 109953389 109953531 -34328958 - MIR SINE MIR -63 145 38 2203 99 0 0 chr12 109953704 109954037 -34328452 + AluSx SINE Alu 1 333 0 1058 196 9 19 chr12 109954392 109954606 -34327883 + MER20 DNA MER1_type 8 219 0 1994 151 0 13 chr12 109954671 109954982 -34327507 + AluJb SINE Alu 3 309 -3 305 193 53 0 chr12 109955892 109955949 -34326540 + MIR SINE MIR 66 125 -83 233 250 0 0 chr12 109955978 109956046 -34326443 - L1PB4 LINE L1 -2 6154 6087 1016 216 60 22 chr12 109958131 109958363 -34324126 - MIR SINE MIR -2 260 20 330 359 55 8 chr12 109959344 109959472 -34323017 - MIR3 SINE MIR -19 189 56 345 370 126 22 chr12 109959800 109960030 -34322459 - L3b LINE CR1 -9 1574 1321 240 170 0 0 chr12 109961053 109961106 -34321383 + (CAATT)n Simple_repeat Simple_repeat 2 54 0 192 301 60 53 chr12 109961328 109961461 -34321028 + L2 LINE L2 3179 3312 -1 306 0 0 0 chr12 109964460 109964494 -34317995 + (GA)n Simple_repeat Simple_repeat 1 34 0 180 111 0 0 chr12 109966035 109966062 -34316427 + (T)n Simple_repeat Simple_repeat 1 27 0 246 235 47 0 chr12 109966291 109966376 -34316113 + A-rich Low_complexity Low_complexity 2 90 0 195 146 0 0 chr12 109967938 109967979 -34314510 + (CA)n Simple_repeat Simple_repeat 2 42 0 375 23 0 0 chr12 109969397 109969441 -34313048 + (TG)n Simple_repeat Simple_repeat 1 44 0 212 305 93 17 chr12 109970100 109970218 -34312271 - L2 LINE L2 -9 3263 3137 266 270 180 0 chr12 109972919 109973019 -34309470 + L2 LINE L2 3193 3310 -3 547 239 96 109 chr12 109973273 109973443 -34309046 - MER113 DNA MER1_type? -57 464 293 1027 92 0 0 chr12 109973443 109973585 -34308904 - L1MA1 LINE L1 0 6302 6161 547 239 96 109 chr12 109973585 109973883 -34308606 - MER113 DNA MER1_type? -228 293 2 262 323 40 60 chr12 109974055 109974256 -34308233 - L2 LINE L2 -211 3061 2865 2376 85 0 10 chr12 109974928 109975235 -34307254 + AluSp SINE Alu 3 306 -7 1938 167 63 23 chr12 109975388 109975783 -34306706 - MLT2D LTR ERVL 0 414 4 19542 96 3 9 chr12 109976543 109980170 -34302319 - L1PA7 LINE L1 -4 6150 2523 9646 112 22 12 chr12 109980170 109982136 -34300353 - L1P3 LINE L1 -3693 2768 766 290 289 0 13 chr12 109982576 109982652 -34299837 + L2 LINE L2 3226 3300 -13 235 258 16 16 chr12 109982773 109982835 -34299654 + L2 LINE L2 3210 3271 -1 * 274 311 34 42 chr12 109982832 109982951 -34299538 - MIR SINE MIR -129 133 16 244 336 80 16 chr12 109985897 109986022 -34296467 - L2 LINE L2 0 3272 3140 2637 319 51 31 chr12 109986653 109987736 -34294753 + L2 LINE L2 163 1266 -2048 3922 153 63 8 chr12 109987888 109988666 -34293823 + L1MA7 LINE L1 5471 6291 0 746 213 14 7 chr12 109988758 109988899 -34293590 - MER5A DNA MER1_type -8 181 40 370 315 62 14 chr12 109988776 109988922 -34293567 + MER5A DNA MER1_type 37 189 0 * 190 278 28 14 chr12 109989016 109989088 -34293401 - L2 LINE L2 -1468 1846 1774 1272 160 148 0 chr12 109989106 109989350 -34293139 + AluJb SINE Alu 1 280 -32 261 0 0 0 chr12 109989350 109989379 -34293110 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 885 104 0 0 chr12 109989646 109989771 -34292718 - AluSg/x SINE Alu -5 305 181 482 301 119 14 chr12 109989774 109990060 -34292429 - L2 LINE L2 -1887 1427 1112 200 297 44 55 chr12 109990549 109990640 -34291849 + L2 LINE L2 3223 3312 -1 264 199 14 41 chr12 109990696 109990805 -34291684 + L1P4 LINE L1 5507 5612 -544 578 135 277 14 chr12 109990821 109990962 -34291527 - MSTD LTR MaLR 0 396 219 357 359 41 47 chr12 109991706 109992026 -34290463 + L2 LINE L2 2540 2857 -457 1332 265 28 39 chr12 109992408 109992842 -34289647 - LTR16A LTR ERVL -2 448 20 225 316 0 0 chr12 109992863 109992920 -34289569 + MIR SINE MIR 23 79 -183 874 235 77 8 chr12 109992922 109993263 -34289226 - MLT1G1 LTR MaLR 0 595 166 820 202 27 38 chr12 109993275 109993458 -34289031 + MSTD LTR MaLR 1 181 -215 477 125 0 0 chr12 109993454 109993526 -34288963 + MSTD LTR MaLR 325 396 0 * 416 171 0 0 chr12 109993538 109993608 -34288881 - MLT1G1 LTR MaLR -525 70 1 2223 118 3 3 chr12 109994139 109994452 -34288037 - AluSq SINE Alu 0 313 1 602 292 36 51 chr12 109994822 109995158 -34287331 - MLT1G1-int LTR MaLR -796 575 245 1654 242 177 15 chr12 109995247 109995489 -34287000 - MLT1G1 LTR MaLR -6 589 388 2213 136 33 25 chr12 109995489 109995849 -34286640 + THE1B LTR MaLR 1 363 -1 1654 242 177 15 chr12 109995849 109996069 -34286420 - MLT1G1 LTR MaLR -207 388 52 201 97 0 0 chr12 109996098 109996129 -34286360 + MIR SINE MIR 94 124 -138 198 302 116 0 chr12 109996124 109996210 -34286279 - L3 LINE CR1 -463 1114 1019 * 1237 179 18 39 chr12 109996229 109996458 -34286031 + MER58A DNA MER1_type 1 224 0 320 231 0 65 chr12 109996473 109996581 -34285908 - MIR3 SINE MIR -9 199 99 847 86 0 0 chr12 109996601 109996706 -34285783 + AluSq/x SINE Alu 44 148 -165 298 305 40 46 chr12 109996786 109996960 -34285529 - MER5B DNA MER1_type -4 174 2 428 280 9 0 chr12 109997949 109998056 -34284433 + MER81 DNA DNA 7 114 0 304 373 8 0 chr12 109998503 109998621 -34283868 + MIR3 SINE MIR 75 193 -15 426 239 46 8 chr12 109998908 109999038 -34283451 - L1ME4a LINE L1 -8 6113 5979 302 294 89 67 chr12 109999047 109999237 -34283252 - L1ME4a LINE L1 -211 5910 5726 1415 223 7 23 chr12 109999237 109999537 -34282952 + AluJo SINE Alu 1 295 -17 302 294 89 67 chr12 109999537 109999717 -34282772 - L1ME4a LINE L1 -395 5726 5532 353 303 70 16 chr12 110000145 110000330 -34282159 - MIR SINE MIR -57 205 11 1857 221 3 6 chr12 110001802 110002168 -34280321 + MLT1A1 LTR MaLR 1 365 0 679 298 104 23 chr12 110002277 110002896 -34279593 - L2 LINE L2 -1 3312 2650 21 0 0 0 chr12 110003143 110003164 -34279325 + AT_rich Low_complexity Low_complexity 1 21 0 299 303 8 16 chr12 110003190 110003312 -34279177 - L2 LINE L2 -1 3312 3192 1449 145 21 48 chr12 110003352 110003642 -34278847 + L1MA10 LINE L1 6041 6322 -12 791 243 65 109 chr12 110004004 110004467 -34278022 + L1MC5 LINE L1 7256 7681 -280 2094 120 35 27 chr12 110004467 110004833 -34277656 + L1MB3 LINE L1 5815 6183 0 791 243 65 109 chr12 110004833 110005036 -34277453 + L1MC5 LINE L1 7681 7892 -69 663 262 6 38 chr12 110005357 110005540 -34276949 + MER5B DNA MER1_type 1 177 -1 189 74 0 0 chr12 110006327 110006354 -34276135 + (TG)n Simple_repeat Simple_repeat 2 28 0 803 122 179 0 chr12 110006418 110006574 -34275915 + MER53 DNA DNA 4 187 -2 764 273 114 51 chr12 110006732 110007160 -34275329 - MLT1H LTR MaLR 0 549 95 1233 293 89 45 chr12 110007637 110008186 -34274303 - MLT1K LTR MaLR -5 583 11 359 290 40 60 chr12 110008473 110008673 -34273816 + L2 LINE L2 3113 3308 -5 1984 157 3 10 chr12 110009071 110009384 -34273105 + AluJb SINE Alu 1 311 -1 216 111 0 0 chr12 110010218 110010254 -34272235 + (T)n Simple_repeat Simple_repeat 1 36 0 442 262 101 0 chr12 110010744 110010912 -34271577 + MIR SINE MIR 63 247 -15 182 245 0 0 chr12 110011401 110011450 -34271039 - MIR3 SINE MIR 0 208 160 278 125 0 0 chr12 110011455 110011495 -34270994 + MER20 DNA MER1_type 177 216 -3 517 328 21 11 chr12 110011578 110011767 -34270722 - MLT1L LTR MaLR -28 587 397 823 169 11 0 chr12 110011841 110012018 -34270471 + GA-rich Low_complexity Low_complexity 2 180 0 530 222 9 0 chr12 110012256 110012364 -34270125 - MER20 DNA MER1_type -3 216 108 877 321 165 16 chr12 110012491 110013492 -34268997 - L2 LINE L2 -609 2705 1556 439 273 36 7 chr12 110013652 110013791 -34268698 + MER103 DNA DNA 3 145 -21 2285 82 6 25 chr12 110014168 110014485 -34268004 + AluY SINE Alu 1 311 0 468 271 77 12 chr12 110014809 110014979 -34267510 - MER5A DNA MER1_type -8 181 1 189 0 0 0 chr12 110015084 110015105 -34267384 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 211 290 32 32 chr12 110015111 110015204 -34267285 + MIR SINE MIR 114 206 -56 181 264 69 14 chr12 110015345 110015417 -34267072 + L2 LINE L2 3187 3262 -10 1535 247 70 47 chr12 110016442 110016912 -34265577 + MLT1J LTR MaLR 23 503 -8 312 332 66 19 chr12 110017591 110017802 -34264687 + L2 LINE L2 2826 3046 -226 688 289 93 45 chr12 110017802 110018155 -34264334 - MLT1I LTR MaLR -4 405 36 283 216 80 23 chr12 110018279 110018367 -34264122 - MIR SINE MIR -24 238 146 866 170 12 0 chr12 110018367 110018532 -34263957 - MIR SINE MIR -64 198 32 685 231 101 10 chr12 110018547 110018755 -34263734 - MIR SINE MIR -35 227 1 948 288 77 31 chr12 110019114 110019192 -34263297 - L2 LINE L2 0 3313 3240 566 104 10 0 chr12 110019192 110019288 -34263201 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 948 288 77 31 chr12 110019288 110019777 -34262712 - L2 LINE L2 -73 3240 2721 1904 160 3 6 chr12 110020574 110020892 -34261597 + L1MB3 LINE L1 5477 5793 -390 238 164 60 60 chr12 110020934 110021001 -34261488 - L1MB3 LINE L1 -366 5805 5739 2615 114 5 7 chr12 110021014 110021417 -34261072 + L1MB3 LINE L1 5782 6183 0 196 111 0 0 chr12 110022801 110022828 -34259661 + MIR SINE MIR 36 62 -200 275 328 129 0 chr12 110023405 110023521 -34258968 - MIR SINE MIR -82 180 50 198 376 72 8 chr12 110024145 110024270 -34258219 + L2 LINE L2 3127 3259 -13 183 129 0 0 chr12 110024276 110024307 -34258182 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 432 0 0 0 chr12 110024448 110024496 -34257993 + (CA)n Simple_repeat Simple_repeat 1 48 0 288 0 0 0 chr12 110024697 110024729 -34257760 + (CA)n Simple_repeat Simple_repeat 1 32 0 3565 111 32 6 chr12 110024779 110025312 -34257177 - L1PA16 LINE L1 -5 6161 5615 707 320 92 44 chr12 110025557 110025737 -34256752 - L2 LINE L2 -3 3310 3140 1525 147 60 77 chr12 110025737 110026036 -34256453 + AluJo SINE Alu 3 296 -16 707 320 92 44 chr12 110026036 110026636 -34255853 - L2 LINE L2 -173 3140 2492 194 349 38 59 chr12 110027053 110027291 -34255198 - L2 LINE L2 -192 3080 2848 404 295 12 24 chr12 110027350 110027516 -34254973 - L2 LINE L2 -551 2763 2600 654 246 27 22 chr12 110027578 110027761 -34254728 - MIR SINE MIR -43 219 36 1222 177 0 0 chr12 110028587 110028830 -34253659 - L1MA4 LINE L1 -5 6295 6053 765 292 171 21 chr12 110028992 110029678 -34252811 - L2 LINE L2 -62 3251 2446 2594 51 0 0 chr12 110030163 110030457 -34252032 + AluY SINE Alu 11 304 -7 298 261 70 35 chr12 110031749 110031864 -34250625 + MIR3 SINE MIR 65 183 -25 969 194 0 29 chr12 110031949 110032124 -34250365 - MER45A DNA AcHobo -6 172 3 435 169 16 105 chr12 110034896 110035020 -34247469 + MER81 DNA DNA 2 114 0 469 260 117 17 chr12 110035179 110035398 -34247091 - MLT1H LTR MaLR -285 264 16 200 234 0 21 chr12 110035586 110035633 -34246856 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr12 110035969 110035992 -34246497 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr12 110036011 110036034 -34246455 + (TAA)n Simple_repeat Simple_repeat 2 24 0 744 250 95 4 chr12 110036035 110036267 -34246222 - MIR SINE MIR -9 253 1 470 331 62 27 chr12 110036324 110036662 -34245827 - L2 LINE L2 -679 2635 2286 287 355 58 0 chr12 110036681 110036974 -34245515 - L2 LINE L2 -1303 2011 1702 198 103 0 0 chr12 110036985 110037014 -34245475 + (T)n Simple_repeat Simple_repeat 1 29 0 190 283 57 0 chr12 110037391 110037444 -34245045 - MIR SINE MIR -11 251 196 665 193 174 6 chr12 110037911 110038072 -34244417 + MER5A DNA MER1_type 1 188 -1 485 223 159 7 chr12 110038470 110038652 -34243837 - MIR SINE MIR -13 249 42 204 216 0 0 chr12 110039054 110039105 -34243384 + CT-rich Low_complexity Low_complexity 3 53 0 216 0 0 0 chr12 110039791 110039815 -34242674 + (T)n Simple_repeat Simple_repeat 1 24 0 280 309 116 24 chr12 110039961 110040168 -34242321 - MIR SINE MIR -34 228 3 241 319 0 0 chr12 110040168 110040237 -34242252 + CT-rich Low_complexity Low_complexity 6 74 0 190 309 12 37 chr12 110040252 110040333 -34242156 - L2 LINE L2 -8 3264 3186 1040 289 73 20 chr12 110040610 110040966 -34241523 + MLT1K LTR MaLR 201 575 -13 375 273 10 10 chr12 110041055 110041154 -34241335 + L2 LINE L2 3173 3271 -1 279 302 16 24 chr12 110041588 110041714 -34240775 + CT-rich Low_complexity Low_complexity 4 128 0 257 279 131 48 chr12 110042105 110042307 -34240182 + MIR SINE MIR 1 213 -49 394 246 54 131 chr12 110042482 110042779 -34239710 - MER102b DNA MER1_type -1 340 67 378 322 96 0 chr12 110043608 110043754 -34238735 + MIR SINE MIR 53 212 -50 221 326 66 97 chr12 110043784 110044072 -34238417 + L2 LINE L2 2977 3255 -17 387 0 0 0 chr12 110044175 110044218 -34238271 + (CA)n Simple_repeat Simple_repeat 2 44 0 233 213 0 80 chr12 110045513 110045588 -34236901 + L2 LINE L2 3245 3313 0 379 347 105 47 chr12 110047264 110047717 -34234772 + L2 LINE L2 2394 2909 -363 1043 170 78 57 chr12 110047717 110047947 -34234542 - MER8 DNA MER2_type -4 235 1 379 347 105 47 chr12 110047947 110048247 -34234242 + L2 LINE L2 2909 3190 -82 1928 183 50 21 chr12 110048266 110048785 -34233704 + MLT2A2 LTR ERVL 1 554 0 2754 22 0 9 chr12 110048814 110049130 -34233359 - AluYb8 SINE Alu -5 313 1 2238 93 38 0 chr12 110049550 110049841 -34232648 - AluSx SINE Alu -10 302 1 599 179 54 54 chr12 110050114 110050298 -34232191 + MER53 DNA DNA 6 189 0 593 283 48 63 chr12 110050301 110050760 -34231729 - Charlie8 DNA MER1_type -1892 525 74 3071 131 32 87 chr12 110051655 110051861 -34230628 + MER39B LTR ERV1 1 217 -436 1804 28 0 0 chr12 110051861 110052071 -34230418 + L1PA5 LINE L1 5943 6153 -1 3071 131 32 87 chr12 110052071 110052544 -34229945 + MER39B LTR ERV1 217 643 -10 506 226 48 103 chr12 110053029 110053175 -34229314 - MIR SINE MIR -110 152 15 410 193 34 0 chr12 110053487 110053575 -34228914 + MLT1J LTR MaLR 105 195 -316 277 248 64 16 chr12 110053702 110053827 -34228662 + MLT1J LTR MaLR 375 505 -6 236 356 0 14 chr12 110053827 110053900 -34228589 + L2 LINE L2 3195 3266 -6 207 313 91 71 chr12 110053925 110054024 -34228465 + L2 LINE L2 3139 3239 -33 571 317 0 44 chr12 110054258 110054407 -34228082 + MIR3 SINE MIR 28 169 -39 2291 99 0 3 chr12 110054407 110054709 -34227780 + AluSc SINE Alu 1 301 -8 571 317 0 44 chr12 110054709 110054742 -34227747 + MIR3 SINE MIR 169 202 -6 1141 165 26 88 chr12 110054789 110055061 -34227428 - MLT1B LTR MaLR -135 255 1 439 260 136 26 chr12 110055295 110055449 -34227040 + L2 LINE L2 3100 3270 -2 577 319 46 17 chr12 110055612 110055853 -34226636 - MIR SINE MIR -12 250 3 219 167 0 0 chr12 110056246 110056288 -34226201 + T-rich Low_complexity Low_complexity 1 42 0 2183 110 0 19 chr12 110057145 110057453 -34225036 - AluY SINE Alu -9 302 1 234 222 14 14 chr12 110057824 110057896 -34224593 - LTR67 LTR ERVL -24 533 462 25 51 0 0 chr12 110059031 110059070 -34223419 + AT_rich Low_complexity Low_complexity 1 39 0 461 275 8 17 chr12 110059124 110059244 -34223245 - MIR SINE MIR -27 235 117 407 263 66 33 chr12 110059851 110059899 -34222590 - MIR SINE MIR -8 254 209 318 26 0 0 chr12 110059899 110059938 -34222551 + (TA)n Simple_repeat Simple_repeat 2 40 0 407 263 66 33 chr12 110059938 110060041 -34222448 - MIR SINE MIR -53 209 98 674 130 0 98 chr12 110060043 110060166 -34222323 + MSTC LTR MaLR 6 131 -316 687 165 39 14 chr12 110060450 110060632 -34221857 + MSTC LTR MaLR 263 428 0 329 306 0 60 chr12 110061741 110061875 -34220614 + MIR SINE MIR 66 191 -71 295 346 20 49 chr12 110061993 110062185 -34220304 + MIR SINE MIR 10 192 -63 21 36 0 0 chr12 110062482 110062510 -34219979 + AT_rich Low_complexity Low_complexity 1 28 0 293 317 46 121 chr12 110062579 110062967 -34219522 - L2 LINE L2 0 3272 2914 1608 170 21 24 chr12 110063250 110063539 -34218950 + AluJo SINE Alu 1 288 -24 2635 91 6 0 chr12 110063836 110064188 -34218301 + THE1A LTR MaLR 2 355 0 638 356 131 11 chr12 110065270 110065795 -34216694 + L2 LINE L2 1931 2518 -796 348 111 0 0 chr12 110065958 110066012 -34216477 + (TG)n Simple_repeat Simple_repeat 1 54 0 1888 149 30 0 chr12 110066512 110066807 -34215682 + AluSq SINE Alu 1 304 -9 222 208 0 0 chr12 110066807 110066855 -34215634 + (TA)n Simple_repeat Simple_repeat 1 48 0 281 134 27 205 chr12 110066987 110067099 -34215390 + MER5C DNA MER1_type 1 92 -232 413 186 14 0 chr12 110067146 110067216 -34215273 - MER5C DNA MER1_type -253 71 1 316 252 47 0 chr12 110067308 110067415 -34215074 + A-rich Low_complexity Low_complexity 3 114 0 714 299 79 57 chr12 110067507 110067618 -34214871 + HAL1b LINE L1 60 167 -1181 4623 34 2 9 chr12 110067618 110068182 -34214307 + L1PA5 LINE L1 5593 6152 -2 714 299 79 57 chr12 110068182 110068200 -34214289 + HAL1b LINE L1 167 183 -1165 2084 96 6 19 chr12 110068200 110068514 -34213975 + AluSp SINE Alu 1 310 -3 714 299 79 57 chr12 110068514 110068838 -34213651 + HAL1b LINE L1 183 524 -824 581 161 0 0 chr12 110068852 110068939 -34213550 + AluS SINE Alu 5 91 -222 200 268 0 0 chr12 110069011 110069052 -34213437 - L2 LINE L2 -52 3220 3180 320 326 42 26 chr12 110069056 110069246 -34213243 + HAL1b LINE L1 569 761 -587 5975 102 6 3 chr12 110069682 110070780 -34211709 - L1PA13 LINE L1 -19 6144 5037 6857 162 38 10 chr12 110070781 110072146 -34210343 + L1PA13 LINE L1 3645 5047 -1099 1006 70 0 7 chr12 110073243 110073386 -34209103 + L1PA13 LINE L1 6022 6163 0 1821 163 7 17 chr12 110074783 110075083 -34207406 + AluSx SINE Alu 2 298 -14 238 121 17 17 chr12 110075643 110075655 -34206834 + A-rich Low_complexity Low_complexity 1 12 -46 2265 95 0 3 chr12 110075655 110075949 -34206540 + AluSp SINE Alu 1 293 -20 238 121 17 17 chr12 110075949 110075994 -34206495 + A-rich Low_complexity Low_complexity 11 58 0 24 0 0 0 chr12 110076433 110076457 -34206032 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 29 chr12 110076552 110076572 -34205917 + AT_rich Low_complexity Low_complexity 1 21 -12 2287 112 0 7 chr12 110076572 110076876 -34205613 + AluSg SINE Alu 1 302 -8 23 0 0 29 chr12 110076876 110076889 -34205600 + AT_rich Low_complexity Low_complexity 21 33 0 281 26 26 0 chr12 110076889 110076927 -34205562 + (GA)n Simple_repeat Simple_repeat 2 40 0 243 229 0 0 chr12 110077059 110077120 -34205369 + (TATG)n Simple_repeat Simple_repeat 4 64 0 241 279 0 39 chr12 110077250 110077379 -34205110 + L1MEd LINE L1 1054 1177 -4942 504 314 16 8 chr12 110077468 110077723 -34204766 + HAL1 LINE L1 1437 1693 -814 434 282 15 15 chr12 110078438 110078633 -34203856 + L1 LINE L1 3478 3672 -2474 489 322 23 42 chr12 110079330 110079544 -34202945 + MIR SINE MIR 47 256 -6 1118 189 102 84 chr12 110080738 110081412 -34201077 - LTR1B LTR ERV1 -81 745 2 13454 182 36 48 chr12 110081413 110082529 -34199960 - HUERS-P2 LTR ERV1 0 3088 1960 1881 122 23 4 chr12 110082529 110082832 -34199657 + AluSx SINE Alu 17 324 0 13454 182 36 48 chr12 110082832 110084827 -34197662 - HUERS-P2 LTR ERV1 -1128 1960 193 1433 234 104 69 chr12 110085029 110085786 -34196703 - LTR1B LTR ERV1 -42 784 1 283 242 198 0 chr12 110086047 110086149 -34196340 - MIR SINE MIR -56 152 37 526 318 102 26 chr12 110086228 110086571 -34195918 + L1MD1 LINE L1 5571 5939 -303 229 303 61 0 chr12 110086897 110086963 -34195526 + MIR SINE MIR 3 72 -190 466 246 8 0 chr12 110086977 110087099 -34195390 + MER103 DNA DNA 42 164 -2 210 353 0 15 chr12 110087745 110087813 -34194676 + MIR SINE MIR 27 93 -169 249 171 57 23 chr12 110087881 110087969 -34194520 + (TTATA)n Simple_repeat Simple_repeat 3 93 0 263 216 18 90 chr12 110087969 110088080 -34194409 + HsTC2 DNA Tc2 1 103 -1795 275 311 40 54 chr12 110088333 110088481 -34194008 + MIR SINE MIR 67 212 -50 300 344 83 66 chr12 110091432 110091888 -34190601 + L2 LINE L2 2809 3272 0 220 255 0 0 chr12 110092036 110092083 -34190406 - MIR SINE MIR -76 186 140 206 274 32 63 chr12 110092152 110092247 -34190242 - MIR SINE MIR -125 137 46 1717 102 16 4 chr12 110092870 110093114 -34189375 + AluSg SINE Alu 58 304 -6 235 329 26 13 chr12 110093114 110093190 -34189299 - L2 LINE L2 -28 3244 3168 21343 104 4 1 chr12 110093485 110096621 -34185868 - L1PA7 LINE L1 -1031 5115 1970 6839 63 16 0 chr12 110096623 110097654 -34184835 + L1PA7 LINE L1 5107 6153 -1 589 233 31 12 chr12 110098699 110098862 -34183627 - L1ME4a LINE L1 -1 6120 5955 342 228 26 26 chr12 110098964 110099078 -34183411 - L1ME4a LINE L1 -431 5690 5577 338 408 6 11 chr12 110099574 110099753 -34182736 - L2 LINE L2 -2 3270 3093 660 270 142 22 chr12 110099755 110099981 -34182508 + MIR SINE MIR 7 259 -3 247 271 24 159 chr12 110100032 110100283 -34182206 - L2 LINE L2 -191 3081 2865 237 240 0 0 chr12 110100292 110100342 -34182147 - MLT1G1 LTR MaLR -2 593 544 3212 232 54 49 chr12 110100364 110102408 -34180081 + L1M2 LINE L1 1527 3510 -2705 219 433 31 0 chr12 110102427 110102554 -34179935 + L2 LINE L2 3138 3268 -4 26 0 0 0 chr12 110102996 110103022 -34179467 + AT_rich Low_complexity Low_complexity 1 26 0 723 192 0 20 chr12 110103022 110103168 -34179321 - FLAM_C SINE Alu 0 143 1 803 224 0 0 chr12 110103286 110103442 -34179047 - AluJb SINE Alu -1 311 156 564 225 0 62 chr12 110103757 110103814 -34178675 + MER58A DNA MER1_type 7 66 -275 2428 74 14 0 chr12 110103814 110104111 -34178378 - AluSq SINE Alu -12 301 1 564 225 0 62 chr12 110104111 110104182 -34178307 + MER58A DNA MER1_type 66 127 -97 192 40 0 0 chr12 110104538 110104563 -34177926 + (TTA)n Simple_repeat Simple_repeat 2 26 0 319 248 221 6 chr12 110105276 110105443 -34177046 + MIR SINE MIR 36 245 -17 905 252 37 5 chr12 110107884 110108098 -34174391 + MER58A DNA MER1_type 2 222 -2 387 329 52 24 chr12 110108119 110108332 -34174157 + L1MC1 LINE L1 4672 4890 -1256 301 326 55 28 chr12 110108476 110108694 -34173795 - HAL1 LINE L1 -766 1741 1518 356 268 92 76 chr12 110108840 110109090 -34173399 - L1MEd LINE L1 -4915 1204 951 6131 161 11 14 chr12 110109123 110110270 -34172219 + L1MC1 LINE L1 5186 6332 -1 236 376 72 10 chr12 110110749 110110943 -34171546 - MLT1J LTR MaLR -77 434 229 276 256 23 12 chr12 110111012 110111098 -34171391 - MLT1J LTR MaLR -330 181 95 21 0 0 0 chr12 110111658 110111679 -34170810 + AT_rich Low_complexity Low_complexity 1 21 0 720 304 26 17 chr12 110112116 110112346 -34170143 + MIR SINE MIR 12 243 -19 814 237 89 46 chr12 110112709 110113059 -34169430 - MLT1A1 LTR MaLR 0 365 1 227 394 11 11 chr12 110113484 110113578 -34168911 - MER5A DNA MER1_type -11 178 85 269 146 0 0 chr12 110113629 110113677 -34168812 - LTR8A LTR ERV1 -679 48 1 364 104 75 0 chr12 110113721 110113788 -34168701 - L1MA5 LINE L1 -6 6294 6223 269 218 0 0 chr12 110114186 110114241 -34168248 - MER58 DNA MER1_type -8 2412 2358 2867 137 16 8 chr12 110114284 110114782 -34167707 + L1MA4 LINE L1 5794 6295 -5 3399 147 77 54 chr12 110114821 110115523 -34166966 + LTR8A LTR ERV1 1 718 -9 496 225 80 7 chr12 110115552 110115703 -34166786 - MER58 DNA MER1_type -2206 214 53 4344 161 17 4 chr12 110115704 110116406 -34166083 + MER50 LTR ERV1 1 711 -23 180 330 93 42 chr12 110116455 110116670 -34165819 + L2 LINE L2 1498 1723 -1591 2036 194 23 3 chr12 110116671 110117057 -34165432 + MLT2C2 LTR ERVL 1 394 -70 249 182 18 0 chr12 110117114 110117169 -34165320 + MLT2C2 LTR ERVL 465 520 0 598 309 37 63 chr12 110117261 110117530 -34164959 + Charlie8 DNA MER1_type 15 276 -2141 678 325 56 21 chr12 110117616 110117887 -34164602 + L2 LINE L2 2781 3060 -253 194 223 21 106 chr12 110117971 110118065 -34164424 + L2 LINE L2 3219 3304 -9 362 316 30 0 chr12 110118487 110118620 -34163869 - LTR16A LTR ERVL 0 450 314 1626 335 55 24 chr12 110118667 110119508 -34162981 - HERVL LTR ERVL -1232 4422 3556 319 329 166 21 chr12 110119846 110120129 -34162360 - L2 LINE L2 -585 2729 2406 1519 164 84 77 chr12 110120233 110120624 -34161865 + MSTD LTR MaLR 3 396 0 2163 107 0 4 chr12 110120702 110120982 -34161507 + AluSx SINE Alu 2 280 -32 207 0 0 0 chr12 110120982 110121005 -34161484 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 335 271 10 21 chr12 110121046 110121142 -34161347 + L2 LINE L2 3218 3312 -1 661 256 87 15 chr12 110121487 110121664 -34160825 - MIR3 SINE MIR -3 205 15 745 281 73 65 chr12 110122773 110123143 -34159346 - L2 LINE L2 -21 3292 2920 396 316 41 69 chr12 110123261 110123578 -34158911 - L2 LINE L2 -414 2900 2593 208 325 38 25 chr12 110123823 110123903 -34158586 + L2 LINE L2 3189 3269 -3 24 0 0 0 chr12 110124013 110124037 -34158452 + AT_rich Low_complexity Low_complexity 1 24 0 416 312 75 16 chr12 110124379 110124565 -34157924 + MIR3 SINE MIR 10 206 -2 581 285 23 11 chr12 110124981 110125241 -34157248 + L1ME3A LINE L1 4266 4528 -1618 * 783 285 28 16 chr12 110125221 110125540 -34156949 + L1ME3A LINE L1 4769 5091 -1055 2388 126 42 0 chr12 110125542 110125923 -34156566 - L1PA16 LINE L1 -1 6165 5769 1819 77 123 11 chr12 110126020 110126281 -34156208 - AluYa8 SINE Alu 0 310 21 1592 130 20 4 chr12 110126281 110126534 -34155955 - L1PA16 LINE L1 -381 5785 5529 1086 257 79 54 chr12 110126545 110127289 -34155200 + L1ME3A LINE L1 5087 5876 -294 5997 168 13 21 chr12 110127316 110128481 -34154008 + L1PA15 LINE L1 4127 5289 -876 2139 142 0 0 chr12 110128481 110128791 -34153698 + AluSx SINE Alu 1 310 -2 5997 168 13 21 chr12 110128791 110129463 -34153026 + L1PA15 LINE L1 5289 5965 -200 602 259 6 19 chr12 110129455 110129617 -34152872 + L1ME3A LINE L1 6005 6164 -6 * 619 218 37 6 chr12 110129730 110129894 -34152595 + MER58C DNA MER1_type 36 200 -15 410 273 77 42 chr12 110129911 110130054 -34152435 - MIR3 SINE MIR -51 157 10 301 346 124 34 chr12 110130160 110130290 -34152199 + L2 LINE L2 2375 2492 -822 2074 153 82 8 chr12 110130290 110130690 -34151799 + MSTB1 LTR MaLR 3 432 0 301 346 124 34 chr12 110130690 110130914 -34151575 + L2 LINE L2 2492 2761 -553 898 218 5 0 chr12 110130923 110131111 -34151378 - MER3 DNA MER1_type -19 190 2 340 349 91 17 chr12 110131170 110131402 -34151087 + L2 LINE L2 2812 3060 -212 550 296 7 0 chr12 110131511 110131653 -34150836 - MER58B DNA MER1_type -1 340 198 583 237 92 0 chr12 110131896 110132069 -34150420 + Charlie4 DNA MER1_type 1741 1929 -32 380 297 87 8 chr12 110132887 110133037 -34149452 + MIR SINE MIR 8 168 -64 1959 143 30 124 chr12 110133491 110133951 -34148538 + MER47B DNA MER2_type 2 418 0 181 217 24 4 chr12 110134238 110134326 -34148163 + L2 LINE L2 3188 3313 0 283 384 104 20 chr12 110134411 110134752 -34147737 - L2 LINE L2 -213 3059 2686 790 149 0 15 chr12 110134759 110134893 -34147596 + AluSg/x SINE Alu 172 303 -9 207 139 0 0 chr12 110135295 110135331 -34147158 + (A)n Simple_repeat Simple_repeat 1 36 0 760 282 40 28 chr12 110136001 110136249 -34146240 + MIR SINE MIR 11 261 -1 1869 123 158 13 chr12 110136661 110136838 -34145651 - MSTA LTR MaLR 0 428 278 486 33 0 0 chr12 110136838 110136898 -34145591 + (GA)n Simple_repeat Simple_repeat 1 60 0 1869 123 158 13 chr12 110136898 110137094 -34145395 - MSTA LTR MaLR -150 278 1 252 261 25 127 chr12 110137260 110137417 -34145072 - MIR SINE MIR -120 142 2 377 278 26 84 chr12 110137618 110137845 -34144644 + L2 LINE L2 3100 3313 0 2177 108 7 3 chr12 110137944 110138239 -34144250 + AluSq SINE Alu 1 296 -17 2654 289 86 95 chr12 110138267 110140422 -34142067 - L2 LINE L2 -198 3115 978 614 337 168 9 chr12 110140474 110141011 -34141478 - L2 LINE L2 -2619 695 74 1536 237 20 71 chr12 110141369 110141917 -34140572 + MLT2B1 LTR ERVL 1 520 0 13708 178 52 38 chr12 110141919 110144914 -34137575 + ERVL-B1 LTR ERVL 3 3072 -2692 1956 108 141 15 chr12 110144914 110145247 -34137242 + THE1C LTR MaLR 1 375 0 13708 178 52 38 chr12 110145247 110145649 -34136840 + ERVL-B1 LTR ERVL 3072 3467 -2297 10721 89 2 1 chr12 110145651 110147035 -34135454 - THE1B-int LTR MaLR -195 1385 1 2331 128 73 14 chr12 110147035 110147379 -34135110 - THE1B LTR MaLR 0 364 1 8402 168 17 34 chr12 110147380 110148899 -34133590 + ERVL-B1 LTR ERVL 4261 5753 -11 1315 223 10 85 chr12 110148903 110149302 -34133187 + MLT2B1 LTR ERVL 1 369 -151 3852 121 0 4 chr12 110149382 110149895 -34132594 - MER9 LTR ERVK 0 511 1 46597 64 18 14 chr12 110149895 110154965 -34127524 - HERVK9 LTR ERVK 0 5916 760 198 233 0 83 chr12 110154965 110155025 -34127464 - MER5B DNA MER1_type -69 109 55 46597 64 18 14 chr12 110155025 110155763 -34126726 - HERVK9 LTR ERVK -5156 760 26 251 163 78 66 chr12 110155763 110155787 -34126702 + MLT2D LTR ERVL 373 357 -57 3872 117 0 4 chr12 110155787 110156300 -34126189 - MER9 LTR ERVK 0 511 1 251 163 78 66 chr12 110156300 110156360 -34126129 + MLT2D LTR ERVL 356 414 0 607 215 290 11 chr12 110156414 110156600 -34125889 - MIR SINE MIR 0 262 25 25 0 0 0 chr12 110158673 110158698 -34123791 + AT_rich Low_complexity Low_complexity 1 25 0 362 88 59 0 chr12 110159975 110160043 -34122446 - MER69 DNA AcHobo -126 2400 2329 542 221 107 0 chr12 110160084 110160206 -34122283 - AluJb SINE Alu -2 310 176 386 178 96 59 chr12 110160206 110160267 -34122222 - MER69 DNA AcHobo -237 2289 2232 5563 83 6 3 chr12 110160267 110160956 -34121533 - LTR8 LTR ERV1 0 691 1 386 178 96 59 chr12 110160956 110161029 -34121460 - MER69 DNA AcHobo -294 2232 2150 1065 242 115 31 chr12 110161044 110161400 -34121089 - MER69 DNA AcHobo -1754 772 387 184 224 0 86 chr12 110161415 110161473 -34121016 - L2 LINE L2 -96 3217 3165 3590 145 36 43 chr12 110162013 110162619 -34119870 - LTR26 LTR ERV1 0 603 2 253 287 30 40 chr12 110162796 110162897 -34119592 - MER5A DNA MER1_type -30 159 60 511 250 33 13 chr12 110163109 110163261 -34119228 + L1MC4a LINE L1 5673 5827 -1981 3388 195 60 21 chr12 110163422 110164003 -34118486 + MER54B LTR ERVL 1 611 -182 1915 149 155 13 chr12 110164003 110164378 -34118111 + MSTA LTR MaLR 1 428 0 3388 195 60 21 chr12 110164378 110164451 -34118038 + MER54B LTR ERVL 611 680 -113 313 228 250 7 chr12 110164575 110164711 -34117778 + MLT1H LTR MaLR 123 291 -258 424 277 37 95 chr12 110164780 110165000 -34117489 - MLT2F LTR ERVL -45 618 164 1137 278 59 12 chr12 110165001 110165321 -34117168 - MLT2F LTR ERVL -326 337 3 242 283 100 17 chr12 110165357 110165477 -34117012 + MLT1H LTR MaLR 382 511 -38 653 346 49 47 chr12 110165853 110166382 -34116107 + L2 LINE L2 2423 2952 -362 845 189 26 0 chr12 110166384 110166537 -34115952 + MSTA LTR MaLR 1 157 -271 656 167 8 48 chr12 110166537 110166663 -34115826 + MSTA LTR MaLR 308 428 0 513 248 39 26 chr12 110166663 110166816 -34115673 + L2 LINE L2 3159 3313 0 369 286 16 16 chr12 110166874 110167000 -34115489 + L2 LINE L2 2940 3065 -248 1036 166 6 0 chr12 110167673 110167848 -34114641 + MLT2B1 LTR ERVL 1 176 -344 258 326 0 0 chr12 110167848 110167934 -34114555 - L1MC/D LINE L1 -1998 5810 5725 675 285 158 25 chr12 110168845 110169238 -34113251 + L2 LINE L2 2869 3313 0 508 287 17 29 chr12 110169266 110169440 -34113049 - MER5B DNA MER1_type 0 178 7 221 306 12 0 chr12 110169476 110169561 -34112928 - L2 LINE L2 -691 2623 2538 185 356 59 0 chr12 110169577 110169678 -34112811 - MIR SINE MIR -84 124 18 662 152 37 16 chr12 110169980 110170225 -34112264 + CT-rich Low_complexity Low_complexity 1 250 0 239 225 11 112 chr12 110171312 110171401 -34111088 - L2 LINE L2 0 3313 3234 207 114 0 0 chr12 110171752 110171787 -34110702 + (ATG)n Simple_repeat Simple_repeat 2 36 0 611 270 25 69 chr12 110172090 110172328 -34110161 - MIR SINE MIR 0 262 36 2174 111 7 0 chr12 110172328 110172626 -34109863 - AluSg SINE Alu -10 300 1 611 270 25 69 chr12 110172626 110172661 -34109828 - MIR SINE MIR -226 36 1 183 180 80 20 chr12 110172980 110173030 -34109459 + L2 LINE L2 3261 3313 0 364 309 7 59 chr12 110173112 110173248 -34109241 - L2 LINE L2 0 3272 3144 255 258 65 0 chr12 110174627 110174689 -34107800 - L2 LINE L2 0 3313 3248 301 299 97 35 chr12 110174985 110175129 -34107360 - MIR3 SINE MIR -18 190 38 1062 179 5 41 chr12 110176179 110176297 -34106192 - MER5A DNA MER1_type -1 188 78 2363 110 0 0 chr12 110176297 110176605 -34105884 - AluSg SINE Alu -2 308 1 1062 179 5 41 chr12 110176605 110176681 -34105808 - MER5A DNA MER1_type -111 78 1 190 326 134 23 chr12 110177169 110177341 -34105148 + MIR SINE MIR 22 212 -50 255 61 0 0 chr12 110177385 110177418 -34105071 + (CTCA)n Simple_repeat Simple_repeat 1 33 0 229 262 211 21 chr12 110177762 110177858 -34104631 + MIR SINE MIR 37 149 -65 471 101 0 0 chr12 110179168 110179247 -34103242 + (GA)n Simple_repeat Simple_repeat 2 80 0 477 0 0 0 chr12 110179254 110179307 -34103182 + (CA)n Simple_repeat Simple_repeat 2 54 0 204 218 0 55 chr12 110180098 110180153 -34102336 + CT-rich Low_complexity Low_complexity 2 53 0 1817 107 16 4 chr12 110180653 110180895 -34101594 - AluSx SINE Alu -22 290 46 182 204 23 0 chr12 110181337 110181381 -34101108 + L2 LINE L2 3262 3306 -7 46 0 0 0 chr12 110181434 110181480 -34101009 + AT_rich Low_complexity Low_complexity 1 46 0 20555 154 33 15 chr12 110181585 110185137 -34097352 + L1MA2 LINE L1 22 3508 -4215 2352 99 3 0 chr12 110185137 110185441 -34097048 + AluSc SINE Alu 1 305 -4 20555 154 33 15 chr12 110185441 110189457 -34093032 + L1MA2 LINE L1 3508 7723 0 28 0 0 0 chr12 110189886 110189914 -34092575 + AT_rich Low_complexity Low_complexity 1 28 0 219 36 0 0 chr12 110190569 110190597 -34091892 + (T)n Simple_repeat Simple_repeat 1 28 0 361 172 0 0 chr12 110190916 110190974 -34091515 - L2 LINE L2 -3 3269 3212 432 351 107 26 chr12 110191145 110191737 -34090752 + L2 LINE L2 2676 3313 0 22 56 0 0 chr12 110191769 110191805 -34090684 + AT_rich Low_complexity Low_complexity 1 36 0 262 368 77 8 chr12 110191961 110192078 -34090411 - MIR SINE MIR -68 140 16 185 86 57 0 chr12 110192272 110192307 -34090182 + CT-rich Low_complexity Low_complexity 2 38 0 861 91 14 14 chr12 110192310 110192453 -34090036 + (TTCC)n Simple_repeat Simple_repeat 1 143 0 2016 237 96 110 chr12 110192495 110192911 -34089578 - HAL1 LINE L1 -1131 1376 956 358 155 64 15 chr12 110192911 110193025 -34089464 - MER53 DNA DNA 0 189 1 2016 237 96 110 chr12 110193025 110193753 -34088736 - HAL1 LINE L1 -1551 956 3 227 351 61 15 chr12 110193757 110193888 -34088601 + MIR3 SINE MIR 70 206 -2 204 212 91 136 chr12 110194005 110194137 -34088352 + MIR SINE MIR 87 212 -50 2586 47 0 0 chr12 110194283 110194582 -34087907 - AluY SINE Alu -12 299 1 740 294 26 18 chr12 110194715 110194943 -34087546 - MIR SINE MIR -31 231 2 214 312 11 132 chr12 110195192 110195207 -34087282 + L2 LINE L2 3004 3019 -253 1755 192 3 7 chr12 110195207 110195504 -34086985 - AluJb SINE Alu -14 298 3 214 312 11 132 chr12 110195504 110195587 -34086902 + L2 LINE L2 3019 3071 -201 372 208 0 0 chr12 110195587 110195664 -34086825 + MER116 DNA Mariner 1 77 -3 214 312 11 132 chr12 110195664 110195753 -34086736 + L2 LINE L2 3071 3169 -103 652 280 30 51 chr12 110195778 110195920 -34086569 - MIR SINE MIR -19 243 106 1927 207 43 82 chr12 110195920 110196496 -34085993 - MLT2B3 LTR ERVL 0 554 1 652 280 30 51 chr12 110196496 110196589 -34085900 - MIR SINE MIR -156 106 13 350 197 15 0 chr12 110196625 110196691 -34085798 + L2 LINE L2 3186 3252 -20 227 253 115 35 chr12 110196720 110196807 -34085682 - L2 LINE L2 -17 3296 3203 232 195 0 0 chr12 110196992 110197033 -34085456 - L2 LINE L2 -346 2968 2928 604 301 17 54 chr12 110197055 110197306 -34085183 + MIR SINE MIR 2 242 -20 2655 111 57 2 chr12 110197404 110197810 -34084679 - MSTA LTR MaLR 0 428 1 501 271 100 29 chr12 110197858 110198068 -34084421 - MIR SINE MIR -36 226 2 1220 175 109 12 chr12 110198101 110198395 -34084094 + AluJo SINE Alu 1 319 0 196 250 0 0 chr12 110198842 110198882 -34083607 - MIR3 SINE MIR -15 193 154 572 228 21 21 chr12 110198920 110199065 -34083424 + MIR SINE MIR 84 228 -34 199 280 173 0 chr12 110199073 110199148 -34083341 - MIR SINE MIR -99 109 22 514 177 9 0 chr12 110199526 110199639 -34082850 + L1MA4 LINE L1 6183 6296 -4 440 271 74 8 chr12 110200778 110200900 -34081589 + L2 LINE L2 3184 3313 0 472 242 46 36 chr12 110200907 110201182 -34081307 - MLT1I LTR MaLR 0 409 102 1418 185 66 44 chr12 110201388 110201751 -34080738 - MLT1A2 LTR MaLR 0 374 4 864 178 40 0 chr12 110201755 110201929 -34080560 + MER106A DNA MER1_type 1 181 -55 571 58 0 0 chr12 110201932 110202001 -34080488 + AluSg/x SINE Alu 213 281 -31 207 0 0 0 chr12 110202004 110202027 -34080462 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 646 289 0 0 chr12 110202583 110202735 -34079754 + MIR SINE MIR 44 195 -67 5510 158 33 6 chr12 110202752 110203761 -34078728 - L1MA8 LINE L1 -3 6288 5221 1819 152 93 7 chr12 110203761 110204071 -34078418 - MER1B DNA MER1_type 0 337 1 5510 158 33 6 chr12 110204071 110204730 -34077759 - L1MA8 LINE L1 -1070 5221 4581 6892 190 40 6 chr12 110204733 110206328 -34076161 - L1MA8 LINE L1 -2091 4055 2407 1714 208 44 3 chr12 110206340 110206705 -34075784 + MSTB LTR MaLR 47 426 0 251 133 0 0 chr12 110206706 110206751 -34075738 - L1MA8 LINE L1 -3732 2414 2370 194 273 18 18 chr12 110206779 110206834 -34075655 + MIR SINE MIR 205 259 -3 330 132 0 0 chr12 110207522 110207575 -34074914 + (CA)n Simple_repeat Simple_repeat 1 53 0 575 312 135 43 chr12 110208024 110208514 -34073975 - LTR67 LTR ERVL -10 547 13 279 338 114 45 chr12 110209429 110209630 -34072859 + MIR SINE MIR 30 244 -18 650 256 152 17 chr12 110209791 110210021 -34072468 - MIR SINE MIR 0 262 2 372 94 0 0 chr12 110210852 110210905 -34071584 + (TG)n Simple_repeat Simple_repeat 1 53 0 213 293 0 71 chr12 110211103 110211202 -34071287 - L2 LINE L2 0 3313 3222 180 196 109 22 chr12 110212826 110212872 -34069617 - L2 LINE L2 -2911 403 354 2229 145 31 75 chr12 110212954 110213477 -34069012 + MLT1D LTR MaLR 1 500 -5 3129 278 54 9 chr12 110214028 110215025 -34067464 + ERVL LTR ERVL 3770 4811 -953 678 242 65 53 chr12 110215029 110215225 -34067264 - MLT1C LTR MaLR 0 467 275 1904 158 3 6 chr12 110215225 110215536 -34066953 - AluJb SINE Alu -2 310 1 678 242 65 53 chr12 110215536 110215729 -34066760 - MLT1C LTR MaLR -192 275 27 243 244 87 132 chr12 110215750 110215936 -34066553 - MER5B DNA MER1_type -12 166 3 702 260 58 31 chr12 110215962 110216170 -34066319 + MIR SINE MIR 48 258 -4 291 114 0 0 chr12 110216635 110216679 -34065810 + (TG)n Simple_repeat Simple_repeat 1 44 0 684 229 49 0 chr12 110216697 110216841 -34065648 + MER58A DNA MER1_type 1 151 0 230 300 36 27 chr12 110216866 110216976 -34065513 - L2 LINE L2 -36 3277 3167 365 268 124 0 chr12 110218113 110218210 -34064279 + MIR SINE MIR 45 153 -55 209 333 140 18 chr12 110218299 110218413 -34064076 + MIR SINE MIR 69 196 -66 247 284 12 0 chr12 110218527 110218608 -34063881 + L1ME4a LINE L1 5582 5663 -458 696 258 93 70 chr12 110219756 110219854 -34062635 - MLT1J LTR MaLR -3 508 414 2071 138 33 25 chr12 110219854 110220215 -34062274 + THE1B LTR MaLR 1 364 0 696 258 93 70 chr12 110220215 110220613 -34061876 - MLT1J LTR MaLR -97 414 1 504 293 69 86 chr12 110220626 110220838 -34061651 + HAL1b LINE L1 399 604 -744 2146 76 7 50 chr12 110220838 110221183 -34061306 + AluY SINE Alu 1 311 0 504 293 69 86 chr12 110221183 110221318 -34061171 + HAL1b LINE L1 604 740 -608 329 285 120 74 chr12 110221398 110221582 -34060907 + L1M4 LINE L1 3419 3593 -2553 2117 102 35 0 chr12 110221582 110221865 -34060624 + AluSp SINE Alu 1 293 -20 329 285 120 74 chr12 110221865 110222140 -34060349 + L1M4 LINE L1 3593 3899 -2247 407 251 136 68 chr12 110222190 110222417 -34060072 + L1M4 LINE L1 3953 4206 -1940 2227 95 14 3 chr12 110222417 110222712 -34059777 + AluSc SINE Alu 1 298 -11 407 251 136 68 chr12 110222712 110222779 -34059710 + L1M4 LINE L1 4206 4267 -1879 278 183 58 17 chr12 110222867 110222987 -34059502 + (TA)n Simple_repeat Simple_repeat 1 125 0 1788 172 7 7 chr12 110223158 110223449 -34059040 + AluJb SINE Alu 1 291 -21 406 310 9 0 chr12 110223746 110223859 -34058630 + L2 LINE L2 3195 3308 -5 269 48 48 0 chr12 110224279 110224321 -34058168 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 321 26 0 0 chr12 110225176 110225214 -34057275 + (TTCTC)n Simple_repeat Simple_repeat 1 38 0 1962 168 3 0 chr12 110225214 110225524 -34056965 - AluJb SINE Alu -1 311 1 523 236 67 24 chr12 110225616 110225781 -34056708 + L2 LINE L2 3142 3313 0 329 271 0 9 chr12 110226848 110226955 -34055534 + L1ME4a LINE L1 5779 5884 -237 181 83 56 0 chr12 110226971 110227007 -34055482 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 347 303 41 25 chr12 110229558 110229680 -34052809 - L3 LINE CR1 -1 1576 1453 237 197 0 0 chr12 110230031 110230097 -34052392 + (TG)n Simple_repeat Simple_repeat 2 67 0 2553 79 3 0 chr12 110230781 110231123 -34051366 + THE1A LTR MaLR 13 355 0 7417 36 5 56 chr12 110231214 110232517 -34049972 - L1PA5 LINE L1 -1 6153 4877 210 260 40 0 chr12 110233035 110233085 -34049404 - MIR SINE MIR -155 107 56 296 286 62 27 chr12 110233220 110233332 -34049157 - L2 LINE L2 -1025 2289 2174 394 304 20 6 chr12 110233436 110233595 -34048894 - MIR3 SINE MIR -69 139 6 240 277 198 0 chr12 110235206 110235307 -34047182 + L2 LINE L2 3193 3313 0 3803 117 12 55 chr12 110235479 110235584 -34046905 - L1PA15 LINE L1 -17 6148 6040 2214 108 71 8 chr12 110235584 110235937 -34046552 - THE1C LTR MaLR 0 375 1 3803 117 12 55 chr12 110235937 110236151 -34046338 - L1PA15 LINE L1 -125 6040 5818 495 0 0 0 chr12 110236151 110236206 -34046283 + (TTC)n Simple_repeat Simple_repeat 2 56 0 3803 117 12 55 chr12 110236206 110236231 -34046258 - L1PA15 LINE L1 -347 5818 5793 2198 105 0 3 chr12 110236231 110236516 -34045973 - AluSg SINE Alu -26 284 1 3803 117 12 55 chr12 110236516 110236825 -34045664 - L1PA15 LINE L1 -372 5793 5521 2195 138 31 6 chr12 110236855 110237210 -34045279 - THE1B LTR MaLR 0 364 1 294 265 15 0 chr12 110237338 110237406 -34045083 - MIR SINE MIR -127 135 67 568 248 172 6 chr12 110237566 110237723 -34044766 + MER5A DNA MER1_type 7 189 0 510 17 0 0 chr12 110237735 110237794 -34044695 + (CA)n Simple_repeat Simple_repeat 2 60 0 385 270 120 0 chr12 110238051 110238151 -34044338 - MER81 DNA DNA -2 112 1 206 316 165 32 chr12 110238202 110238360 -34044129 + MIR SINE MIR 29 207 -55 2138 128 6 6 chr12 110238645 110238957 -34043532 + AluJo SINE Alu 1 312 0 439 272 6 51 chr12 110238960 110239118 -34043371 + MIR SINE MIR 46 196 -66 1801 134 25 25 chr12 110239334 110239640 -34042849 + AluSx SINE Alu 9 314 0 207 238 48 0 chr12 110239675 110239717 -34042772 - L2 LINE L2 -16 3256 3213 371 310 168 5 chr12 110239718 110239921 -34042568 - MIR SINE MIR -3 259 24 652 213 161 0 chr12 110240038 110240193 -34042296 - MER5A DNA MER1_type -1 188 9 271 313 0 0 chr12 110240498 110240565 -34041924 + MER5A DNA MER1_type 108 174 -15 29 28 0 0 chr12 110240851 110240887 -34041602 + AT_rich Low_complexity Low_complexity 1 36 0 1071 280 93 36 chr12 110240985 110241628 -34040861 + L1ME3 LINE L1 5452 6131 -31 360 43 0 0 chr12 110241689 110241735 -34040754 + (CA)n Simple_repeat Simple_repeat 1 46 0 2267 93 0 13 chr12 110242556 110242856 -34039633 + AluY SINE Alu 1 296 -15 294 257 0 14 chr12 110243004 110243074 -34039415 + Charlie8 DNA MER1_type 11 79 -2338 241 290 0 0 chr12 110243185 110243254 -34039235 + Charlie8 DNA MER1_type 2345 2413 -4 217 372 54 8 chr12 110244089 110244218 -34038271 - L2 LINE L2 -4 3309 3175 232 265 15 45 chr12 110245544 110245676 -34036813 + CT-rich Low_complexity Low_complexity 4 131 0 181 271 0 34 chr12 110246623 110246682 -34035807 + MIR SINE MIR 59 115 -147 1815 139 83 12 chr12 110246721 110247058 -34035431 + MER46B DNA MER2_type 1 236 0 678 221 8 0 chr12 110247159 110247286 -34035203 - MER3 DNA MER1_type -81 128 1 835 268 68 0 chr12 110248017 110248252 -34034237 - MIR SINE MIR -3 259 9 1038 178 44 0 chr12 110248615 110248795 -34033694 + MER58A DNA MER1_type 37 224 0 184 381 129 14 chr12 110249119 110249258 -34033231 + L2 LINE L2 3116 3270 -2 600 324 30 38 chr12 110249433 110249695 -34032794 - MIR SINE MIR 0 262 3 581 233 164 0 chr12 110250047 110250193 -34032296 + MER5A DNA MER1_type 20 189 0 466 255 10 0 chr12 110250355 110250457 -34032032 + MER5B DNA MER1_type 44 146 -32 206 347 103 61 chr12 110250522 110250735 -34031754 + L2 LINE L2 2976 3197 -75 280 279 208 7 chr12 110250755 110250909 -34031580 - MIR SINE MIR -6 256 72 296 132 0 19 chr12 110250924 110250977 -34031512 + L2 LINE L2 3262 3313 0 307 237 43 21 chr12 110251614 110251707 -34030782 - MIR SINE MIR -42 220 126 323 303 40 0 chr12 110252095 110252194 -34030295 - L2 LINE L2 -1 3271 3169 323 189 122 14 chr12 110252385 110252459 -34030030 - MER5B DNA MER1_type -52 126 45 197 291 10 58 chr12 110252482 110252585 -34029904 - L2 LINE L2 -317 2955 2858 700 257 23 6 chr12 110253030 110253201 -34029288 - MER5B DNA MER1_type -2 176 3 234 298 84 30 chr12 110253213 110253344 -34029145 + MER5A DNA MER1_type 4 141 -48 361 183 122 0 chr12 110253448 110253530 -34028959 - MER5A DNA MER1_type -84 105 14 282 329 63 35 chr12 110253629 110253772 -34028717 + L2 LINE L2 3126 3272 0 287 250 25 0 chr12 110254450 110254530 -34027959 + GA-rich Low_complexity Low_complexity 1 82 0 280 217 42 189 chr12 110255079 110255296 -34027193 + MER5A DNA MER1_type 1 185 -4 205 241 111 0 chr12 110255411 110255465 -34027024 + MIR SINE MIR 89 148 -60 714 244 43 29 chr12 110255488 110255697 -34026792 - MER102b DNA MER1_type -24 317 106 911 217 17 6 chr12 110255958 110256138 -34026351 - MER5A DNA MER1_type -4 185 4 2274 91 23 10 chr12 110256207 110256514 -34025975 + AluSq SINE Alu 1 311 -2 596 242 62 96 chr12 110256639 110256879 -34025610 - MIR SINE MIR 0 262 31 714 217 0 0 chr12 110256882 110257011 -34025478 + MER94 DNA DNA 4 132 -2 205 333 0 0 chr12 110257119 110257170 -34025319 + L2 LINE L2 3210 3260 -12 1458 24 0 0 chr12 110258118 110258282 -34024207 - L1PA5 LINE L1 0 6154 5991 207 0 0 0 chr12 110258437 110258460 -34024029 + (T)n Simple_repeat Simple_repeat 1 23 0 262 307 79 55 chr12 110258966 110259093 -34023396 - L2 LINE L2 -1 3271 3142 424 252 75 0 chr12 110259537 110259644 -34022845 - L2 LINE L2 -1 3312 3198 253 121 69 52 chr12 110259812 110259870 -34022619 + L2 LINE L2 3214 3272 0 340 266 62 9 chr12 110260018 110260131 -34022358 - MIR SINE MIR -71 191 73 431 339 57 22 chr12 110260552 110260779 -34021710 - L3 LINE CR1 -41 1536 1302 222 214 22 22 chr12 110260970 110261059 -34021430 + (TTA)n Simple_repeat Simple_repeat 1 89 0 434 329 180 21 chr12 110261289 110261712 -34020777 - L3 LINE CR1 -554 1023 534 215 339 0 15 chr12 110262043 110262108 -34020381 - MIR SINE MIR -171 91 28 23 33 0 0 chr12 110263314 110263344 -34019145 + AT_rich Low_complexity Low_complexity 1 30 0 1220 332 145 22 chr12 110263992 110265067 -34017422 + L2 LINE L2 386 1614 -1700 2211 133 42 33 chr12 110265067 110265427 -34017062 + THE1B LTR MaLR 2 364 0 1220 332 145 22 chr12 110265427 110265503 -34016986 + L2 LINE L2 1614 1679 -1635 232 194 60 60 chr12 110265661 110265728 -34016761 - MER5C DNA MER1_type -257 67 1 628 349 74 2 chr12 110265735 110266139 -34016350 + L2 LINE L2 1686 2118 -1196 260 118 0 39 chr12 110266236 110266287 -34016202 + (TTCTCC)n Simple_repeat Simple_repeat 6 54 0 1528 203 10 17 chr12 110266289 110266590 -34015899 - AluSx SINE Alu -12 300 2 424 266 101 0 chr12 110266754 110266863 -34015626 - L2 LINE L2 -1 3312 3193 425 277 61 31 chr12 110266960 110267124 -34015365 - MIR SINE MIR -63 145 17 201 74 0 0 chr12 110267488 110267515 -34014974 + (CA)n Simple_repeat Simple_repeat 1 27 0 344 206 0 0 chr12 110267765 110267833 -34014656 + MIR SINE MIR 67 134 -128 756 220 27 21 chr12 110267915 110268101 -34014388 + MIR SINE MIR 76 262 0 2187 110 0 0 chr12 110268733 110269014 -34013475 + AluSq SINE Alu 1 281 -32 210 354 15 0 chr12 110269121 110269186 -34013303 + L2 LINE L2 1136 1201 -2113 511 265 73 63 chr12 110269251 110269553 -34012936 + MLT1H LTR MaLR 50 354 -195 3759 279 131 42 chr12 110269657 110271601 -34010888 + L2 LINE L2 1211 3313 0 380 274 26 0 chr12 110271593 110271710 -34010779 - MIR SINE MIR -59 203 84 * 476 322 78 6 chr12 110272118 110272298 -34010191 + MIR SINE MIR 19 211 -51 241 313 184 25 chr12 110273000 110273163 -34009326 - MIR3 SINE MIR 0 208 20 451 139 129 20 chr12 110274088 110274189 -34008300 - MER103 DNA DNA -54 112 1 977 313 30 44 chr12 110274819 110275251 -34007238 + LTR16A LTR ERVL 16 441 -9 1834 175 35 23 chr12 110275350 110275698 -34006791 + MLT1A1 LTR MaLR 11 362 -3 714 291 36 76 chr12 110275711 110276131 -34006358 + L2 LINE L2 2823 3225 -88 5610 181 66 34 chr12 110276189 110277485 -34005004 + Charlie1a DNA MER1_type 73 1410 -45 435 71 0 0 chr12 110277495 110277551 -34004938 - MER41A LTR ERV1 -99 455 400 370 180 0 0 chr12 110277553 110277614 -34004875 + Charlie1a DNA MER1_type 1395 1455 0 186 245 19 19 chr12 110277615 110277668 -34004821 + L2 LINE L2 3255 3307 -6 2111 95 13 48 chr12 110277846 110278161 -34004328 - AluSx SINE Alu -8 304 1 2161 156 151 39 chr12 110280087 110280550 -34001939 - MLT2B2 LTR ERVL 0 515 1 376 296 31 0 chr12 110282380 110282478 -34000011 + MIR3 SINE MIR 81 181 -27 259 248 38 98 chr12 110282909 110283042 -33999447 + L2 LINE L2 2965 3089 -183 481 235 167 32 chr12 110283139 110283390 -33999099 + L2 LINE L2 3029 3313 0 195 330 149 21 chr12 110284347 110284441 -33998048 - MIR SINE MIR -60 148 43 390 311 47 27 chr12 110284449 110284597 -33997892 + MIR SINE MIR 16 166 -96 186 133 0 0 chr12 110285234 110285264 -33997225 + (A)n Simple_repeat Simple_repeat 1 30 0 1185 186 31 40 chr12 110286148 110286374 -33996115 + MER58A DNA MER1_type 1 224 0 396 272 147 7 chr12 110286472 110286608 -33995881 - MIR3 SINE MIR -37 171 17 744 303 5 0 chr12 110287718 110287913 -33994576 + MIR SINE MIR 23 218 -44 268 315 182 40 chr12 110287923 110288225 -33994264 + L2 LINE L2 2926 3270 -2 240 259 0 0 chr12 110288230 110288288 -33994201 + (TGAA)n Simple_repeat Simple_repeat 3 60 0 434 290 32 0 chr12 110288499 110288623 -33993866 - MER91B DNA MER1_type -62 128 1 433 287 38 45 chr12 110288882 110289039 -33993450 + MIR3 SINE MIR 21 176 -32 252 213 16 0 chr12 110289069 110289130 -33993359 + (TAA)n Simple_repeat Simple_repeat 2 63 0 193 292 0 28 chr12 110289768 110289840 -33992649 - MIR SINE MIR -148 114 45 259 204 61 0 chr12 110290790 110290867 -33991622 + MIR SINE MIR 38 122 -86 981 276 126 63 chr12 110291254 110291554 -33990935 + LTR16C LTR ERVL 2 343 -148 4158 40 0 0 chr12 110291554 110292025 -33990464 - L1PA4 LINE L1 0 6155 5685 981 276 126 63 chr12 110292025 110292185 -33990304 + LTR16C LTR ERVL 343 491 0 199 255 59 0 chr12 110292411 110292462 -33990027 + MIR SINE MIR 198 251 -11 234 339 50 58 chr12 110292558 110292679 -33989810 - L2 LINE L2 0 3272 3153 364 245 133 10 chr12 110293506 110293604 -33988885 + MIR SINE MIR 59 168 -94 623 304 79 54 chr12 110293653 110294045 -33988444 + L2 LINE L2 2912 3313 0 428 273 20 0 chr12 110294727 110294826 -33987663 - MIR SINE MIR -73 135 35 387 273 18 36 chr12 110294813 110294923 -33987566 + L2 LINE L2 3136 3243 -29 * 413 308 8 0 chr12 110295363 110295480 -33987009 - MER5A DNA MER1_type -50 139 22 22 0 0 0 chr12 110295777 110295799 -33986690 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr12 110296145 110296168 -33986321 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 760 271 11 5 chr12 110296500 110296688 -33985801 - MER3 DNA MER1_type -20 189 1 1600 152 71 11 chr12 110296945 110297228 -33985261 + AluJo SINE Alu 1 300 -12 21 71 0 0 chr12 110297671 110297713 -33984776 + AT_rich Low_complexity Low_complexity 1 42 0 337 240 62 0 chr12 110297745 110297874 -33984615 - MER113 DNA MER1_type? -384 137 1 1349 0 0 0 chr12 110297942 110298082 -33984407 - L1PA3 LINE L1 -2 6153 6014 340 184 0 40 chr12 110298602 110298678 -33983811 - MER103 DNA DNA -1 165 93 455 266 0 9 chr12 110298750 110298863 -33983626 + MIR SINE MIR 111 222 -40 2191 110 3 7 chr12 110298901 110299209 -33983280 + AluSx SINE Alu 1 307 -5 317 171 136 45 chr12 110299209 110299290 -33983199 - MER103 DNA DNA -72 94 3 280 256 13 13 chr12 110299654 110299732 -33982757 + L2 LINE L2 3234 3311 -2 891 250 34 41 chr12 110300571 110300839 -33981650 + LTR33 LTR ERVL 5 270 -251 393 245 182 7 chr12 110301027 110301170 -33981319 + MIR SINE MIR 95 262 0 21 0 0 0 chr12 110301198 110301219 -33981270 + AT_rich Low_complexity Low_complexity 1 21 0 588 274 87 29 chr12 110301870 110302111 -33980378 + MIR SINE MIR 8 262 0 720 289 78 4 chr12 110302348 110302580 -33979909 - MIR SINE MIR -12 250 2 668 285 6 11 chr12 110302730 110302909 -33979580 - MER5B DNA MER1_type 0 178 1 246 203 94 0 chr12 110303552 110303616 -33978873 + MLT1L LTR MaLR 14 83 -532 849 263 102 13 chr12 110303784 110304088 -33978401 + LTR33 LTR ERVL 187 517 -4 808 256 43 28 chr12 110304655 110304866 -33977623 - MIR SINE MIR -29 233 20 252 128 0 0 chr12 110304883 110304922 -33977567 - MIR SINE MIR -60 148 110 1582 242 177 18 chr12 110305167 110305941 -33976548 - Charlie2 DNA MER1_type -2 2860 1964 341 264 154 66 chr12 110305941 110306123 -33976366 + L2 LINE L2 3113 3310 -3 284 167 37 0 chr12 110306938 110306992 -33975497 - MIR SINE MIR -93 169 114 2073 123 3 43 chr12 110307032 110307357 -33975132 + AluSx SINE Alu 1 312 0 394 299 10 21 chr12 110307367 110307464 -33975025 + MIR SINE MIR 20 115 -147 210 313 25 50 chr12 110307502 110307582 -33974907 - MIR SINE MIR -154 108 31 581 283 32 53 chr12 110308659 110308906 -33973583 - MIR SINE MIR 0 262 21 381 117 0 0 chr12 110309429 110309489 -33973000 + (CAT)n Simple_repeat Simple_repeat 1 60 0 618 307 64 22 chr12 110309498 110309923 -33972566 - LTR16C LTR ERVL 0 491 6 362 344 53 0 chr12 110309984 110310135 -33972354 - MIR SINE MIR -68 194 36 547 306 19 0 chr12 110310330 110310487 -33972002 - MIR SINE MIR -40 222 63 303 337 57 50 chr12 110311078 110311387 -33971102 - L1MC4a LINE L1 -90 6031 5719 26 30 0 0 chr12 110313571 110313604 -33968885 + AT_rich Low_complexity Low_complexity 1 33 0 2287 156 19 8 chr12 110314153 110314524 -33967965 - THE1C LTR MaLR 0 375 1 203 143 0 24 chr12 110314786 110314828 -33967661 + (TG)n Simple_repeat Simple_repeat 2 42 0 228 67 0 0 chr12 110314840 110314870 -33967619 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1929 173 67 3 chr12 110314897 110315268 -33967221 - L1MB2 LINE L1 -8 6163 5769 43828 32 21 1 chr12 110315283 110321313 -33961176 - L1PA2 LINE L1 0 6155 1 270 318 72 80 chr12 110321478 110321742 -33960747 - MIR SINE MIR 0 262 1 1719 101 48 4 chr12 110322006 110322304 -33960185 + AluSq SINE Alu 29 337 0 1295 169 127 46 chr12 110323458 110323606 -33958883 - AluSx SINE Alu -5 307 172 186 43 0 0 chr12 110323606 110323629 -33958860 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2109 84 7 21 chr12 110323629 110323913 -33958576 - AluSc SINE Alu -29 280 1 1295 169 127 46 chr12 110323913 110324047 -33958442 - AluSx SINE Alu -139 173 1 1938 125 27 3 chr12 110324970 110325266 -33957223 - AluSg SINE Alu -3 307 5 233 175 35 18 chr12 110325444 110325501 -33956988 - L1MB2 LINE L1 -765 5419 5362 313 258 148 22 chr12 110325521 110325703 -33956786 - L1MB2 LINE L1 -813 5333 5129 2194 111 7 3 chr12 110326398 110326695 -33955794 + AluSg1 SINE Alu 1 298 -11 2131 127 6 19 chr12 110327589 110327904 -33954585 - AluJo SINE Alu -1 311 1 212 171 0 0 chr12 110328482 110328523 -33953966 + A-rich Low_complexity Low_complexity 1 41 0 222 286 0 0 chr12 110328614 110328663 -33953826 + (CA)n Simple_repeat Simple_repeat 1 49 0 332 200 0 0 chr12 110328687 110328747 -33953742 - MER117 DNA MER1_type -132 65 6 12852 97 9 11 chr12 110329800 110331672 -33950817 - L1P LINE L1 -3341 2805 937 754 204 29 0 chr12 110333516 110333653 -33948836 + MER63 DNA MER1_type 4 770 -66 2898 73 19 5 chr12 110335590 110335960 -33946529 - THE1C LTR MaLR 0 375 1 235 314 42 25 chr12 110336139 110336257 -33946232 + L2 LINE L2 3189 3308 -5 390 239 108 3 chr12 110337497 110337643 -33944846 + MIR SINE MIR 3 157 -51 8267 198 41 27 chr12 110337787 110339738 -33942751 - L1M1 LINE L1 -3899 2949 991 4024 144 55 59 chr12 110341004 110341884 -33940605 - L1MB8 LINE L1 -15 6163 5288 26 50 0 0 chr12 110342118 110342158 -33940331 + AT_rich Low_complexity Low_complexity 1 40 0 184 306 189 58 chr12 110343214 110344137 -33938352 - L2 LINE L2 -337 2977 1935 272 250 25 17 chr12 110344365 110344485 -33938004 - L1MC4 LINE L1 -1339 6703 6583 1916 127 7 10 chr12 110344834 110345133 -33937356 - AluSp SINE Alu -13 300 3 230 54 0 27 chr12 110345281 110345318 -33937171 + (TTA)n Simple_repeat Simple_repeat 3 38 0 29 0 0 0 chr12 110345348 110345377 -33937112 + AT_rich Low_complexity Low_complexity 1 29 0 254 299 45 0 chr12 110346078 110346232 -33936257 + L1M LINE L1 5264 5424 -2384 237 261 31 0 chr12 110346465 110346530 -33935959 + MIR SINE MIR 196 262 0 2184 95 34 0 chr12 110346661 110346956 -33935533 - AluSq SINE Alu -8 305 1 402 128 154 13 chr12 110346957 110347035 -33935454 + MER3 DNA MER1_type 120 208 -1 1654 162 78 48 chr12 110347062 110347208 -33935281 - MER1B DNA MER1_type -2373 329 189 2121 99 17 7 chr12 110347208 110347500 -33934989 - AluSg SINE Alu -15 295 1 1654 162 78 48 chr12 110347500 110347814 -33934675 - MER1B DNA MER1_type -2513 189 1 399 271 132 35 chr12 110347815 110348125 -33934364 + L1MC5 LINE L1 7349 7688 -273 22 35 0 0 chr12 110348724 110348753 -33933736 + AT_rich Low_complexity Low_complexity 1 29 0 6989 187 16 10 chr12 110348945 110350782 -33931707 - L1PA13 LINE L1 -4335 2462 769 8876 156 17 2 chr12 110354752 110356466 -33926023 - L1P4 LINE L1 -630 5533 3795 322 272 97 0 chr12 110356679 110356793 -33925696 - L3 LINE CR1 -62 1515 1391 329 320 41 7 chr12 110357114 110357261 -33925228 + HAL1 LINE L1 553 704 -1803 384 22 0 0 chr12 110357338 110357383 -33925106 + (CA)n Simple_repeat Simple_repeat 1 45 0 2054 232 97 4 chr12 110357401 110357918 -33924571 + MLT1F1 LTR MaLR 1 565 -2 216 0 0 0 chr12 110357942 110357966 -33924523 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1531 159 0 102 chr12 110357971 110358285 -33924204 - AluJb SINE Alu -30 282 1 11855 62 4 1 chr12 110358466 110359970 -33922519 - L1P LINE L1 -1083 5063 3556 488 161 115 0 chr12 110360347 110360434 -33922055 - MER46C DNA MER2_type -3 335 239 374 224 10 31 chr12 110360435 110360533 -33921956 + MER82 DNA MER2_type 1 96 -557 203 125 25 0 chr12 110360533 110360573 -33921916 + (CA)n Simple_repeat Simple_repeat 1 41 0 187 365 79 0 chr12 110360596 110360722 -33921767 - MIR SINE MIR -77 185 50 1005 242 5 0 chr12 110360811 110361005 -33921484 + MER82 DNA MER2_type 459 653 0 678 234 0 40 chr12 110361010 110361185 -33921304 - MER46C DNA MER2_type -112 226 59 1007 170 52 39 chr12 110361922 110361986 -33920503 - L1MC/D LINE L1 -823 5536 5474 1143 205 26 4 chr12 110361986 110362220 -33920269 + MER8 DNA MER2_type 1 239 0 1007 170 52 39 chr12 110362220 110362385 -33920104 - L1MC/D LINE L1 -885 5474 5304 * 3675 214 37 27 chr12 110362366 110363345 -33919144 - L1MC/D LINE L1 -1254 4892 3904 2345 266 71 24 chr12 110363499 110364659 -33917830 + L1M4 LINE L1 2782 4191 -1955 2797 113 9 12 chr12 110364672 110365096 -33917393 + L1PA15 LINE L1 5444 5866 -299 1462 60 35 10 chr12 110365226 110365426 -33917063 - L1P LINE L1 -2100 4046 3842 * 6860 36 2 0 chr12 110365425 110366227 -33916262 + L1PA3 LINE L1 5258 6061 -94 245 227 21 10 chr12 110366301 110366398 -33916091 + (TGGG)n Simple_repeat Simple_repeat 4 101 0 206 134 37 24 chr12 110366411 110366493 -33915996 + (GGGTG)n Simple_repeat Simple_repeat 3 85 0 273 250 130 28 chr12 110367143 110367251 -33915238 + L3b LINE CR1 1350 1468 -115 229 307 131 15 chr12 110368982 110369256 -33913233 + L2 LINE L2 2192 2497 -817 306 183 37 49 chr12 110369982 110370064 -33912425 + L1M4 LINE L1 5013 5093 -1053 1090 118 59 6 chr12 110370193 110370363 -33912126 - AluSg/x SINE Alu -5 307 129 5301 84 4 6 chr12 110370365 110371081 -33911408 - L1PA8 LINE L1 -1 6171 5457 386 270 25 12 chr12 110371093 110371256 -33911233 - FRAM SINE Alu 0 166 2 2047 115 3 7 chr12 110371644 110371940 -33910549 - AluSx SINE Alu -13 299 5 185 363 39 59 chr12 110372090 110372192 -33910297 - L2 LINE L2 -32 3240 3141 5556 138 11 4 chr12 110373014 110374392 -33908097 - L1PA16 LINE L1 -98 6068 4679 325 321 22 36 chr12 110377131 110377484 -33905005 + LTR16B LTR ERVL 38 458 -6 1541 226 82 61 chr12 110378264 110378985 -33903504 + L1M4 LINE L1 2677 3412 -2734 1024 221 7 52 chr12 110379038 110379345 -33903144 - AluSx SINE Alu -5 297 5 189 74 0 0 chr12 110379494 110379521 -33902968 + (A)n Simple_repeat Simple_repeat 1 27 0 220 308 46 0 chr12 110379721 110379786 -33902703 + L2 LINE L2 3200 3267 -5 7145 190 38 11 chr12 110381108 110382715 -33899774 - L1 LINE L1 -1458 4688 3039 845 178 205 19 chr12 110384382 110384640 -33897849 - L1MB8 LINE L1 -3 6175 5870 2191 116 17 0 chr12 110384640 110384933 -33897556 - AluSx SINE Alu -14 298 1 1643 68 39 1 chr12 110384933 110385216 -33897273 - L1PA8A LINE L1 -690 5441 5151 1147 97 7 0 chr12 110385216 110385360 -33897129 - AluSq/x SINE Alu -168 145 1 271 273 141 71 chr12 110385844 110386042 -33896447 - MARNA DNA Mariner -355 231 20 269 215 183 0 chr12 110386256 110386349 -33896140 - MER103 DNA DNA -12 154 45 477 206 41 41 chr12 110387528 110387674 -33894815 + MER91B DNA MER1_type 44 189 -1 647 242 132 9 chr12 110390650 110390869 -33891620 - MIR SINE MIR 0 262 17 231 239 28 61 chr12 110392034 110392214 -33890275 - AluYa8 SINE Alu 0 300 127 1976 145 150 8 chr12 110392574 110392947 -33889542 - MSTA LTR MaLR -2 426 1 453 262 123 36 chr12 110393544 110393876 -33888613 - HAL1 LINE L1 -1 2506 2146 3032 181 22 16 chr12 110393997 110395066 -33887423 + L1MB4 LINE L1 4822 5894 -286 683 265 99 73 chr12 110395618 110395668 -33886821 + L1ME4a LINE L1 5259 5306 -815 2136 104 22 41 chr12 110395668 110395986 -33886503 + AluSx SINE Alu 1 312 0 683 265 99 73 chr12 110395986 110396481 -33886008 + L1ME4a LINE L1 5306 5815 -306 213 234 0 31 chr12 110396532 110396596 -33885893 + MIR SINE MIR 201 262 0 311 158 105 26 chr12 110396600 110396676 -33885813 - L1MC5 LINE L1 -48 7913 7832 328 243 51 40 chr12 110396748 110396925 -33885564 + L1ME4a LINE L1 5922 6100 -21 516 221 158 29 chr12 110397132 110397372 -33885117 + L1MC5 LINE L1 7528 7798 -163 890 102 36 7 chr12 110397376 110397513 -33884976 + L1MB2 LINE L1 6023 6163 -8 228 67 0 0 chr12 110397540 110397570 -33884919 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 203 143 0 24 chr12 110397582 110397624 -33884865 + (CA)n Simple_repeat Simple_repeat 2 42 0 2155 156 19 8 chr12 110397886 110398257 -33884232 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr12 110398806 110398839 -33883650 + AT_rich Low_complexity Low_complexity 1 33 0 2884 3 0 0 chr12 110400720 110401030 -33881459 - AluYa5 SINE Alu -1 310 1 279 256 13 0 chr12 110401039 110401117 -33881372 - L1ME LINE L1 -302 5819 5741 998 116 14 13 chr12 110402238 110404244 -33878245 - HSATII Satellite Satellite -9 2007 1 1031 111 12 8 chr12 110404267 110405352 -33877137 - HSATII Satellite Satellite -71 1088 1 10204 91 24 2 chr12 110405488 110407113 -33875376 + L1P LINE L1 1223 2882 -3264 235 222 0 0 chr12 110407552 110407615 -33874874 + L1MC4 LINE L1 6640 6702 -1340 201 74 0 0 chr12 110407616 110407643 -33874846 + (TA)n Simple_repeat Simple_repeat 2 28 0 234 184 92 13 chr12 110408777 110408853 -33873636 + L1ME4a LINE L1 5944 6025 -96 835 219 112 71 chr12 110409869 110410280 -33872209 + MLT1H LTR MaLR 114 541 -8 29 28 0 0 chr12 110410558 110410594 -33871895 + AT_rich Low_complexity Low_complexity 1 36 0 1350 206 84 12 chr12 110410599 110410919 -33871570 - MER2 DNA MER2_type 0 344 2 2096 145 15 0 chr12 110411026 110411357 -33871132 - MER1B DNA MER1_type 0 337 2 297 302 78 39 chr12 110411456 110411635 -33870854 - MER117 DNA MER1_type 0 197 12 2078 133 0 0 chr12 110412344 110412637 -33869852 + AluSx SINE Alu 1 293 -19 30 27 0 0 chr12 110412665 110412702 -33869787 + AT_rich Low_complexity Low_complexity 1 37 0 243 274 116 79 chr12 110412951 110413040 -33869449 + MER45C DNA AcHobo 1 85 -868 1909 112 4 4 chr12 110413040 110413318 -33869171 - AluY SINE Alu -14 297 20 243 274 116 79 chr12 110413318 110413418 -33869071 + MER45C DNA AcHobo 85 197 -756 4726 53 0 2 chr12 110413630 110414255 -33868234 - L1P LINE L1 -1299 4847 4224 1622 203 0 7 chr12 110414531 110414832 -33867657 - AluJo SINE Alu -13 299 1 374 226 106 53 chr12 110416796 110417004 -33865485 + L1MEd LINE L1 934 1152 -4967 371 337 18 12 chr12 110417096 110417259 -33865230 + HAL1 LINE L1 1390 1553 -954 994 225 131 0 chr12 110417368 110417612 -33864877 - AluJo SINE Alu -36 276 1 491 302 88 3 chr12 110417861 110418179 -33864310 + L1ME3A LINE L1 5618 5962 -208 290 223 118 52 chr12 110419319 110419530 -33862959 + L1ME3 LINE L1 924 1148 -4971 307 334 104 28 chr12 110419538 110419855 -33862634 + L1ME3 LINE L1 1208 1548 -4762 468 305 76 6 chr12 110420108 110420423 -33862066 + L1ME3 LINE L1 5603 5939 -206 22 0 0 0 chr12 110420674 110420696 -33861793 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 110421469 110421495 -33860994 + AT_rich Low_complexity Low_complexity 1 26 0 1844 129 46 15 chr12 110421533 110421859 -33860630 + MER9 LTR ERVK 1 336 -175 303 340 75 0 chr12 110422349 110422549 -33859940 - L1M4 LINE L1 -2157 3989 3775 4679 111 6 0 chr12 110422686 110423368 -33859121 - L1PA5 LINE L1 0 6154 5469 603 108 27 9 chr12 110423461 110423572 -33858917 + CT-rich Low_complexity Low_complexity 4 116 0 1731 127 75 8 chr12 110423587 110423854 -33858635 - AluSx SINE Alu -7 305 21 1335 176 38 41 chr12 110423893 110424234 -33858255 + MER63B DNA MER1_type 1 340 -96 250 261 163 11 chr12 110424429 110424521 -33857968 + MER63B DNA MER1_type 322 427 -8 208 302 0 0 chr12 110424955 110425008 -33857481 - L2 LINE L2 -5 3308 3256 13708 56 2 1 chr12 110425578 110427425 -33855064 + L1P LINE L1 2803 4651 -1495 324 336 73 33 chr12 110427425 110427699 -33854790 + L1M4 LINE L1 4066 4350 -1796 310 290 68 59 chr12 110427710 110427728 -33854761 + L1M4 LINE L1 4481 4497 -1649 1678 175 11 3 chr12 110427728 110428013 -33854476 + AluJb SINE Alu 1 287 -25 310 290 68 59 chr12 110428013 110428215 -33854274 + L1M4 LINE L1 4497 4703 -1443 500 298 0 20 chr12 110428773 110428924 -33853565 - LTR36-int LTR ERV1 -1494 292 145 182 118 29 0 chr12 110429387 110429421 -33853068 + (TA)n Simple_repeat Simple_repeat 2 36 0 223 260 39 0 chr12 110430483 110430560 -33851929 + (TA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chr12 110432484 110432506 -33849983 + AT_rich Low_complexity Low_complexity 1 22 0 4109 38 2 2 chr12 110433482 110434372 -33848117 + L1P2 LINE L1 4877 5767 -388 201 147 0 0 chr12 110436444 110436478 -33846011 + (CACCAT)n Simple_repeat Simple_repeat 5 38 0 2180 73 0 4 chr12 110437165 110437439 -33845050 + AluY SINE Alu 25 297 -14 1839 111 0 4 chr12 110438180 110438432 -33844057 - AluSc SINE Alu -17 292 42 31 0 0 0 chr12 110438827 110438858 -33843631 + AT_rich Low_complexity Low_complexity 1 31 0 637 319 95 24 chr12 110440368 110440863 -33841626 - ERVL LTR ERVL -2937 2586 2019 827 228 0 86 chr12 110440870 110441102 -33841387 + AluJo SINE Alu 1 212 -100 1098 204 48 130 chr12 110441113 110441338 -33841151 - LTR36 LTR ERV1 -18 593 351 1922 191 89 17 chr12 110441338 110441809 -33840680 - LTR22 LTR ERVK -4 505 1 1098 204 48 130 chr12 110441809 110442229 -33840260 - LTR36 LTR ERV1 -260 351 1 498 172 0 43 chr12 110442229 110442322 -33840167 + AluJo SINE Alu 203 291 -21 292 273 45 34 chr12 110442440 110442616 -33839873 - MER50 LTR ERV1 -7 727 550 23 33 0 0 chr12 110442835 110442865 -33839624 + GC_rich Low_complexity Low_complexity 1 30 0 2030 165 0 9 chr12 110443590 110443905 -33838584 + AluSx SINE Alu 1 312 0 2859 234 104 14 chr12 110443973 110445194 -33837295 + L1PBa LINE L1 8 1482 -5381 2298 150 77 17 chr12 110445236 110445947 -33836542 - L1 LINE L1 -3645 3920 3185 222 91 0 0 chr12 110445992 110446025 -33836464 + (C)n Simple_repeat Simple_repeat 1 33 0 272 205 19 31 chr12 110446049 110446210 -33836279 + C-rich Low_complexity Low_complexity 1 159 0 286 348 0 0 chr12 110446226 110446338 -33836151 + C-rich Low_complexity Low_complexity 1 112 0 1605 184 38 3 chr12 110446504 110446797 -33835692 - AluJo SINE Alu -9 303 1 1131 338 50 38 chr12 110446868 110447464 -33835025 + ERVL LTR ERVL 2135 2722 -3042 1521 209 3 0 chr12 110447464 110447747 -33834742 + AluJb SINE Alu 3 286 -26 1131 338 50 38 chr12 110447747 110448329 -33834160 + ERVL LTR ERVL 2722 3327 -2437 228 67 0 0 chr12 110449613 110449643 -33832846 + (TA)n Simple_repeat Simple_repeat 1 30 0 1454 186 61 29 chr12 110449657 110449936 -33832553 - AluJo SINE Alu -24 288 1 1811 109 58 3 chr12 110450185 110450478 -33832011 - AluY SINE Alu -2 309 1 326 280 54 0 chr12 110450598 110450691 -33831798 - MIR SINE MIR -17 245 148 1032 113 25 0 chr12 110450764 110450923 -33831566 - L1PA15 LINE L1 -212 5953 5791 226 279 10 67 chr12 110450923 110451027 -33831462 - MLT1H LTR MaLR -444 105 8 515 308 26 36 chr12 110451584 110451892 -33830597 - MER102b DNA MER1_type -35 306 2 3869 204 13 14 chr12 110452088 110453499 -33828990 - L1 LINE L1 -2979 4586 3173 2482 74 15 0 chr12 110453499 110453824 -33828665 - L1PA7 LINE L1 -4 6150 5821 277 280 53 61 chr12 110453829 110453961 -33828528 - MIR SINE MIR -127 135 5 26 30 0 0 chr12 110455324 110455357 -33827132 + AT_rich Low_complexity Low_complexity 1 33 0 4321 73 16 0 chr12 110455486 110456278 -33826211 - L1PA6 LINE L1 -290 5864 5064 10980 106 78 6 chr12 110456768 110458765 -33823724 + L1P3 LINE L1 3345 5498 -656 518 203 16 8 chr12 110458919 110459042 -33823447 - MER50 LTR ERV1 -608 126 3 417 363 183 6 chr12 110459357 110459685 -33822804 + L2 LINE L2 1814 2199 -1115 1556 191 3 10 chr12 110459842 110460136 -33822353 + AluSq SINE Alu 5 296 -17 565 261 7 14 chr12 110460136 110460278 -33822211 - MIR SINE MIR -104 158 18 5187 150 18 3 chr12 110461686 110462540 -33819949 + L1MC1 LINE L1 5459 6324 -9 1722 174 10 36 chr12 110462559 110462972 -33819517 + L1MC/D LINE L1 5320 5721 -2064 28 0 0 0 chr12 110463392 110463420 -33819069 + AT_rich Low_complexity Low_complexity 1 28 0 1992 122 38 0 chr12 110463835 110464122 -33818367 - AluSx SINE Alu -14 298 1 314 345 84 0 chr12 110464973 110465115 -33817374 - MER97a DNA MER1_type? -717 177 24 908 334 65 40 chr12 110466447 110466909 -33815580 - ERVL LTR ERVL -2557 3207 2758 1616 196 0 0 chr12 110466909 110467195 -33815294 - AluJb SINE Alu -26 286 1 908 334 65 40 chr12 110467195 110467773 -33814716 - ERVL LTR ERVL -3006 2758 2141 1605 191 31 3 chr12 110467849 110468137 -33814352 + AluJo SINE Alu 1 296 -16 4165 163 36 76 chr12 110468304 110470226 -33812263 - L1PBa LINE L1 -3249 3613 1777 3711 96 2 2 chr12 110470227 110470760 -33811729 - L1PA13 LINE L1 -135 6028 5496 7587 33 0 0 chr12 110471571 110473099 -33809390 - L1PA3 LINE L1 0 6155 4628 1117 48 0 0 chr12 110473099 110473244 -33809245 + L1P LINE L1 4311 4455 -1691 238 270 51 73 chr12 110473562 110473699 -33808790 - L2 LINE L2 0 3313 3180 22 80 0 0 chr12 110474697 110474747 -33807742 + AT_rich Low_complexity Low_complexity 1 50 0 205 163 47 0 chr12 110474867 110474910 -33807579 + (CATA)n Simple_repeat Simple_repeat 1 45 0 307 157 28 36 chr12 110475784 110475867 -33806622 + L1MC3 LINE L1 6788 6897 -924 2709 199 89 23 chr12 110475873 110476567 -33805922 + L1MC3 LINE L1 7046 7785 0 1309 210 41 4 chr12 110477279 110477550 -33804939 + AluJo SINE Alu 1 281 -31 324 331 63 17 chr12 110477697 110477872 -33804617 - MIR SINE MIR -79 183 1 21 57 0 0 chr12 110477947 110477982 -33804507 + AT_rich Low_complexity Low_complexity 1 35 0 189 178 0 0 chr12 110478302 110478347 -33804142 + (TATG)n Simple_repeat Simple_repeat 1 45 0 450 254 75 63 chr12 110478961 110479280 -33803209 - HAL1 LINE L1 -273 2234 1912 226 298 138 0 chr12 110480838 110480932 -33801557 - MIR SINE MIR -119 143 37 2285 110 29 0 chr12 110481398 110481781 -33800708 - L1M1 LINE L1 -4508 3057 2664 729 274 21 12 chr12 110481793 110482132 -33800357 - L1M4 LINE L1 -1229 4917 4576 1343 181 10 48 chr12 110482322 110482615 -33799874 + AluJo SINE Alu 1 282 -30 380 316 53 38 chr12 110482733 110482942 -33799547 - MIR SINE MIR -50 212 1 1663 179 3 10 chr12 110483702 110483998 -33798491 + AluJb SINE Alu 1 294 -18 402 264 102 27 chr12 110484533 110484849 -33797640 - L1MB5 LINE L1 -320 5854 5499 1229 218 116 11 chr12 110485741 110486094 -33796395 - MLT1D LTR MaLR 0 505 116 2121 120 0 40 chr12 110486503 110486828 -33795661 - AluSx SINE Alu 0 312 1 1101 309 69 32 chr12 110487357 110488083 -33794406 + L2 LINE L2 2557 3306 -7 21 0 0 0 chr12 110488553 110488574 -33793915 + GC_rich Low_complexity Low_complexity 1 21 0 1098 189 0 15 chr12 110488991 110489192 -33793297 - AluJb SINE Alu -103 209 12 21 36 0 0 chr12 110489530 110489558 -33792931 + AT_rich Low_complexity Low_complexity 1 28 0 1079 56 0 7 chr12 110490178 110490320 -33792169 + L1PA3 LINE L1 6015 6155 0 1025 206 42 0 chr12 110491104 110491391 -33791098 + L1MA2 LINE L1 3209 3507 -2639 2449 36 3 7 chr12 110491580 110491881 -33790608 - AluY SINE Alu -11 300 1 22 56 0 0 chr12 110491950 110491986 -33790503 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 110492077 110492100 -33790389 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr12 110492361 110492411 -33790078 + AT_rich Low_complexity Low_complexity 1 50 0 5086 147 47 28 chr12 110492783 110493960 -33788529 + L1MA2 LINE L1 5101 6304 0 21 0 0 0 chr12 110494268 110494289 -33788200 + AT_rich Low_complexity Low_complexity 1 21 0 515 179 0 54 chr12 110494640 110494752 -33787737 - MER5B DNA MER1_type 0 178 73 282 280 0 50 chr12 110494966 110495066 -33787423 + L2 LINE L2 3215 3309 -4 855 65 36 50 chr12 110495763 110495902 -33786587 + L1PA13 LINE L1 6027 6163 0 295 216 10 10 chr12 110498495 110498592 -33783897 + GA-rich Low_complexity Low_complexity 4 100 0 343 302 168 71 chr12 110498640 110499302 -33783187 - L2 LINE L2 -696 2618 1893 227 231 231 0 chr12 110499351 110499459 -33783030 + L1M4 LINE L1 3834 3966 -2180 544 210 49 0 chr12 110499929 110500072 -33782417 - MLT1J2 LTR MaLR -300 150 1 336 264 65 26 chr12 110501449 110501604 -33780885 - MLT1J1 LTR MaLR -129 317 157 1984 117 0 14 chr12 110502311 110502622 -33779867 - AluSg SINE Alu 0 307 1 8150 136 3 8 chr12 110502899 110504228 -33778261 - L1P3 LINE L1 -5138 1323 1 442 92 0 15 chr12 110504535 110504600 -33777889 + U6 snRNA snRNA 1 64 -43 230 290 103 0 chr12 110505110 110505217 -33777272 - LTR67 LTR ERVL -34 523 406 1776 185 29 43 chr12 110505502 110505957 -33776532 + MLT2B2 LTR ERVL 1 414 0 276 128 135 74 chr12 110506192 110506207 -33776282 - L1MA10 LINE L1 0 6334 6320 930 189 158 30 chr12 110506207 110506670 -33775819 - L1ME1 LINE L1 -5 6161 5523 1524 207 94 0 chr12 110506911 110507273 -33775216 - MSTD LTR MaLR 0 396 1 2312 216 47 10 chr12 110507273 110507788 -33774701 - MSTD-int LTR MaLR 0 1735 1202 603 234 19 51 chr12 110507892 110508148 -33774341 - MSTD-int LTR MaLR -1006 729 482 1735 166 80 46 chr12 110508488 110508964 -33773525 - LTR54B LTR ERV1 -6 492 1 2181 233 79 49 chr12 110508964 110509385 -33773104 + L1MC4a LINE L1 5568 5975 -1833 1823 189 10 0 chr12 110509385 110509692 -33772797 + AluSg SINE Alu 1 310 0 2181 233 79 49 chr12 110509692 110510131 -33772358 + L1MC4a LINE L1 5975 6454 -1354 1669 188 181 7 chr12 110510169 110510595 -33771894 - MER21B LTR ERV1 -363 500 1 1006 140 19 111 chr12 110510763 110511082 -33771407 - LTR12 LTR ERV1 -480 234 1 31 0 0 0 chr12 110511915 110511946 -33770543 + AT_rich Low_complexity Low_complexity 1 31 0 287 318 94 59 chr12 110512451 110512728 -33769761 + L2 LINE L2 2225 2526 -788 315 85 0 0 chr12 110512728 110512775 -33769714 + (CA)n Simple_repeat Simple_repeat 2 48 0 287 318 94 59 chr12 110512775 110512953 -33769536 + L2 LINE L2 2526 2696 -618 3724 168 18 18 chr12 110513090 110513763 -33768726 + L1PBa LINE L1 22 694 -6871 1908 153 7 0 chr12 110513972 110514267 -33768222 - AluSq SINE Alu -15 298 2 25 31 0 0 chr12 110515014 110515046 -33767443 + AT_rich Low_complexity Low_complexity 1 32 0 226 230 60 30 chr12 110515457 110515557 -33766932 + MIR SINE MIR 160 262 0 695 215 46 35 chr12 110516273 110516411 -33766078 - L1MC4 LINE L1 0 8042 7898 210 71 0 0 chr12 110516411 110516439 -33766050 + (CA)n Simple_repeat Simple_repeat 1 28 0 695 215 46 35 chr12 110516439 110516560 -33765929 - L1MC4 LINE L1 -144 7898 7780 357 24 0 0 chr12 110516881 110516923 -33765566 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 21 0 0 0 chr12 110517271 110517292 -33765197 + AT_rich Low_complexity Low_complexity 1 21 0 515 131 24 0 chr12 110518671 110518755 -33763734 - AluJ/FLAM SINE Alu -224 88 3 527 184 48 16 chr12 110518860 110518985 -33763504 + L1MC3 LINE L1 7140 7268 -517 1352 171 27 4 chr12 110519043 110519306 -33763183 + L1MC3 LINE L1 7253 7521 -264 2115 129 0 0 chr12 110519307 110519601 -33762888 + AluSq SINE Alu 1 294 -19 299 181 0 35 chr12 110521423 110521539 -33760950 + (TA)n Simple_repeat Simple_repeat 1 112 0 195 42 0 0 chr12 110521589 110521613 -33760876 + (TA)n Simple_repeat Simple_repeat 2 25 0 383 229 92 23 chr12 110521791 110521922 -33760567 + L2 LINE L2 3174 3313 0 354 308 39 39 chr12 110522613 110522769 -33759720 - L2 LINE L2 0 3313 3158 183 100 0 0 chr12 110523855 110523885 -33758604 + (CA)n Simple_repeat Simple_repeat 1 30 0 1319 164 73 7 chr12 110524351 110524637 -33757852 - LTR19A LTR ERV1 -181 305 1 344 266 0 63 chr12 110525021 110525243 -33757246 + L1PBa LINE L1 2126 2333 -5233 6846 46 6 32 chr12 110525753 110527047 -33755442 - L1PA3 LINE L1 0 6155 4888 1396 252 51 20 chr12 110527183 110527636 -33754853 + L1ME LINE L1 141 607 -5598 1128 147 41 25 chr12 110528361 110528606 -33753883 - L1MA2 LINE L1 0 6304 6056 1362 183 32 8 chr12 110528721 110528973 -33753516 + AluJo SINE Alu 29 286 -26 24 67 0 0 chr12 110529030 110529075 -33753414 + AT_rich Low_complexity Low_complexity 1 45 0 262 333 21 0 chr12 110529322 110529418 -33753071 + MIR SINE MIR 150 247 -15 21 36 0 0 chr12 110529688 110529716 -33752773 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 110530050 110530073 -33752416 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr12 110530567 110530596 -33751893 + AT_rich Low_complexity Low_complexity 1 29 0 1386 249 70 9 chr12 110531092 110531521 -33750968 - L1ME LINE L1 -5589 481 27 383 292 125 50 chr12 110531889 110532266 -33750223 + L1ME LINE L1 1231 1635 -4761 289 219 168 31 chr12 110532493 110532689 -33749800 + L1ME LINE L1 5600 5822 -348 696 126 31 8 chr12 110534174 110534301 -33748188 - MER9 LTR ERVK 0 511 382 2042 150 0 0 chr12 110534645 110534952 -33747537 - AluSx SINE Alu -5 307 1 248 286 29 0 chr12 110535335 110535440 -33747049 - L2 LINE L2 -349 2965 2858 278 278 28 23 chr12 110535671 110535847 -33746642 + T-rich Low_complexity Low_complexity 4 180 0 22 0 0 0 chr12 110536188 110536210 -33746279 + AT_rich Low_complexity Low_complexity 1 22 0 698 310 93 23 chr12 110536361 110536868 -33745621 + L2 LINE L2 2680 3218 -95 24 0 0 0 chr12 110540075 110540099 -33742390 + AT_rich Low_complexity Low_complexity 1 24 0 1510 189 48 0 chr12 110540103 110540373 -33742116 + AluJb SINE Alu 3 285 -27 358 355 20 33 chr12 110540460 110540761 -33741728 + HERVL LTR ERVL 2803 3099 -2555 676 250 63 39 chr12 110542504 110542599 -33739890 + MER5C DNA MER1_type 1 92 -232 2538 37 3 0 chr12 110542599 110542894 -33739595 + AluY SINE Alu 1 296 -15 676 250 63 39 chr12 110542894 110543124 -33739365 + MER5C DNA MER1_type 92 301 -23 231 245 19 0 chr12 110543156 110543209 -33739280 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 1859 191 0 0 chr12 110544362 110544665 -33737824 + AluJb SINE Alu 1 303 -9 250 302 233 0 chr12 110545842 110545971 -33736518 + MIR SINE MIR 103 261 -1 443 107 13 0 chr12 110545978 110546053 -33736436 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 494 291 20 7 chr12 110546637 110546785 -33735704 - MLT1K LTR MaLR -145 443 294 456 307 114 0 chr12 110546811 110546987 -33735502 - MLT1K LTR MaLR -386 202 7 881 133 21 7 chr12 110546998 110547149 -33735340 - MLT1C LTR MaLR 0 626 318 3135 206 44 10 chr12 110547152 110547874 -33734615 - MSTB1-int LTR MaLR -903 748 2 2664 154 12 5 chr12 110547875 110548304 -33734185 - MSTB1 LTR MaLR 0 432 1 376 196 0 33 chr12 110548305 110548397 -33734092 - MLT1C LTR MaLR -378 89 1 2381 93 0 10 chr12 110548509 110548821 -33733668 + AluY SINE Alu 1 309 -2 510 307 111 45 chr12 110549141 110549473 -33733016 + MLT1H LTR MaLR 1 354 -195 298 161 22 86 chr12 110549516 110549612 -33732877 + MLT1H LTR MaLR 456 549 -6 275 191 29 0 chr12 110549620 110549688 -33732801 - MER103 DNA DNA -77 89 20 216 211 0 0 chr12 110550723 110550799 -33731690 + GA-rich Low_complexity Low_complexity 2 77 0 1965 156 59 11 chr12 110550835 110551193 -33731296 + THE1C LTR MaLR 1 375 0 194 210 93 36 chr12 110552457 110552542 -33729947 + MIR3 SINE MIR 101 167 -41 216 211 0 0 chr12 110552788 110552864 -33729625 + GA-rich Low_complexity Low_complexity 2 77 0 2217 128 56 11 chr12 110552900 110553259 -33729230 + THE1C LTR MaLR 1 375 0 379 335 117 29 chr12 110553266 110553328 -33729161 + L2 LINE L2 1583 1638 -1676 267 54 0 0 chr12 110553328 110553365 -33729124 + (TG)n Simple_repeat Simple_repeat 2 38 0 379 335 117 29 chr12 110553365 110553720 -33728769 + L2 LINE L2 1638 2037 -1277 606 223 199 70 chr12 110553724 110554051 -33728438 + MLT1J2 LTR MaLR 23 391 -59 683 6 96 18 chr12 110554058 110554225 -33728264 + (TA)n Simple_repeat Simple_repeat 1 180 0 22 0 0 0 chr12 110554236 110554258 -33728231 + AT_rich Low_complexity Low_complexity 1 22 0 257 269 0 0 chr12 110554332 110554399 -33728090 + G-rich Low_complexity Low_complexity 6 72 0 275 158 0 40 chr12 110554450 110554526 -33727963 + G-rich Low_complexity Low_complexity 1 73 0 449 17 17 0 chr12 110554773 110554831 -33727658 + (TA)n Simple_repeat Simple_repeat 2 60 0 2136 151 8 0 chr12 110555654 110556011 -33726478 - MER46B DNA MER2_type -1 235 1 436 334 62 26 chr12 110556367 110556675 -33725814 + MLT1K LTR MaLR 155 473 -115 242 290 16 0 chr12 110556789 110556851 -33725638 - MIR3 SINE MIR -132 76 14 429 299 112 50 chr12 110557165 110557238 -33725251 + MIR SINE MIR 7 74 -188 975 167 62 152 chr12 110557238 110557639 -33724850 + MLT1A1 LTR MaLR 1 365 0 429 299 112 50 chr12 110557639 110557806 -33724683 + MIR SINE MIR 74 262 0 279 0 0 0 chr12 110557818 110557849 -33724640 + (T)n Simple_repeat Simple_repeat 1 31 0 603 263 153 62 chr12 110557954 110558373 -33724116 - LTR16B LTR ERVL 0 464 8 1130 289 92 37 chr12 110558498 110559160 -33723329 + L2 LINE L2 2545 3244 -69 524 324 0 7 chr12 110559251 110559393 -33723096 + MIR SINE MIR 20 160 -102 971 144 58 53 chr12 110559396 110559604 -33722885 - THE1B LTR MaLR 0 364 156 680 277 166 29 chr12 110559639 110560018 -33722471 + LTR16B LTR ERVL 34 464 0 189 0 0 0 chr12 110560123 110560144 -33722345 + (A)n Simple_repeat Simple_repeat 1 21 0 339 250 164 33 chr12 110560156 110560308 -33722181 - MIR SINE MIR 0 262 91 322 115 16 16 chr12 110560323 110560384 -33722105 - MSTB2 LTR MaLR 0 457 397 995 136 13 0 chr12 110560386 110560541 -33721948 - THE1B LTR MaLR -207 157 1 352 234 125 70 chr12 110560727 110560855 -33721634 + MIR SINE MIR 57 191 -71 355 346 32 22 chr12 110562078 110562263 -33720226 - MIR SINE MIR -55 207 21 799 215 60 76 chr12 110564320 110564737 -33717752 + MLT1A1 LTR MaLR 1 365 0 2260 121 3 0 chr12 110565131 110565438 -33717051 - AluSp SINE Alu -5 308 1 341 338 102 9 chr12 110565654 110565870 -33716619 - MIR SINE MIR -10 252 17 947 253 36 42 chr12 110565988 110566372 -33716117 + MLT2C2 LTR ERVL 83 464 0 1624 302 102 17 chr12 110566454 110568478 -33714011 - L1ME LINE L1 -3946 2315 61 618 298 4 42 chr12 110568782 110569020 -33713469 - L2 LINE L2 -141 3172 2944 569 273 32 27 chr12 110569050 110569237 -33713252 - MIR SINE MIR -74 188 1 195 235 0 0 chr12 110569599 110569650 -33712839 + GA-rich Low_complexity Low_complexity 1 51 0 191 282 0 0 chr12 110569976 110570015 -33712474 + L2 LINE L2 3216 3254 -18 2343 264 73 57 chr12 110570461 110571426 -33711063 + L2 LINE L2 2070 3050 -263 309 211 13 13 chr12 110571429 110571505 -33710984 - MER45A DNA AcHobo 0 178 103 43 76 0 0 chr12 110571711 110571803 -33710686 + AT_rich Low_complexity Low_complexity 1 92 0 237 258 16 0 chr12 110572269 110572331 -33710158 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 676 250 63 39 chr12 110572363 110572593 -33709896 - MER5C DNA MER1_type -23 301 92 2538 37 3 0 chr12 110572593 110572888 -33709601 - AluY SINE Alu -15 296 1 676 250 63 39 chr12 110572888 110572983 -33709506 - MER5C DNA MER1_type -232 92 1 354 247 118 74 chr12 110574205 110574514 -33707975 + L1MC/D LINE L1 5111 5430 -734 189 0 0 0 chr12 110574997 110575018 -33707471 + (T)n Simple_repeat Simple_repeat 1 21 0 333 261 270 0 chr12 110576130 110576267 -33706222 + MIR SINE MIR 71 243 -19 612 249 97 0 chr12 110576513 110576678 -33705811 + MIR SINE MIR 34 214 -48 2025 140 0 0 chr12 110576757 110577049 -33705440 - AluSx SINE Alu -20 292 1 297 302 78 39 chr12 110577758 110577937 -33704552 + MER117 DNA MER1_type 12 197 0 2096 145 15 0 chr12 110578037 110578368 -33704121 + MER1B DNA MER1_type 2 337 0 1350 206 84 12 chr12 110578475 110578795 -33703694 + MER2 DNA MER2_type 2 344 0 29 28 0 0 chr12 110578800 110578836 -33703653 + AT_rich Low_complexity Low_complexity 1 36 0 1409 217 137 33 chr12 110579114 110579602 -33702887 - MLT1H LTR MaLR -8 541 3 291 289 77 10 chr12 110579821 110579925 -33702564 + MIR SINE MIR 104 214 -48 395 298 57 0 chr12 110580017 110580141 -33702348 + MIR SINE MIR 36 166 -96 481 343 42 19 chr12 110580233 110580446 -33702043 + L2 LINE L2 7 224 -3090 283 186 14 14 chr12 110580455 110580525 -33701964 - Charlie5 DNA MER1_type -2537 75 6 2724 283 47 12 chr12 110580529 110581661 -33700828 + L2 LINE L2 2133 3311 -2 287 182 0 0 chr12 110581682 110581726 -33700763 + L2 LINE L2 3213 3256 -16 306 0 0 0 chr12 110581743 110581777 -33700712 + (TG)n Simple_repeat Simple_repeat 2 35 0 1279 286 68 7 chr12 110583438 110584663 -33697826 - L1ME3A LINE L1 -220 5950 4650 25 0 0 0 chr12 110584668 110584693 -33697796 + AT_rich Low_complexity Low_complexity 1 25 0 716 192 7 0 chr12 110584693 110584839 -33697650 - L1MD1 LINE L1 -14 6622 6476 8492 243 37 13 chr12 110584839 110587761 -33694728 - L1MD1 LINE L1 -749 5791 2838 2917 212 44 46 chr12 110587775 110588690 -33693799 - L1MD1 LINE L1 -4671 1869 957 6369 83 139 0 chr12 110588704 110589482 -33693007 - L1PA8 LINE L1 0 6172 5347 2073 116 7 3 chr12 110589482 110589775 -33692714 - AluSc SINE Alu -15 294 1 6369 83 139 0 chr12 110589775 110589962 -33692527 - L1PA8 LINE L1 -825 5347 5187 16175 110 10 3 chr12 110589962 110592532 -33689957 + L1PA8 LINE L1 2595 5181 -965 925 293 68 0 chr12 110592537 110592848 -33689641 - L1MD1 LINE L1 -5592 948 617 842 270 60 9 chr12 110592854 110593320 -33689169 - L1MEc LINE L1 -3453 2762 2273 529 282 82 36 chr12 110593328 110593608 -33688881 - L1MEc LINE L1 -4106 2290 1998 21 71 0 0 chr12 110593671 110593713 -33688776 + AT_rich Low_complexity Low_complexity 1 42 0 234 250 88 38 chr12 110593826 110593906 -33688583 - MIR SINE MIR -116 146 63 2533 57 0 0 chr12 110594356 110594654 -33687835 - AluY SINE Alu -13 298 1 237 83 0 0 chr12 110594845 110594881 -33687608 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 246 325 115 19 chr12 110594881 110595032 -33687457 - L2 LINE L2 -10 3262 3097 232 299 81 11 chr12 110595189 110595276 -33687213 - MIR SINE MIR -50 212 120 262 281 72 79 chr12 110595507 110595646 -33686843 + MIR SINE MIR 100 237 -25 2264 122 23 41 chr12 110595834 110596270 -33686219 + L1MA5A LINE L1 5870 6297 0 375 313 9 0 chr12 110596296 110596411 -33686078 + MIR SINE MIR 47 162 -100 336 320 11 17 chr12 110597136 110597317 -33685172 + L1ME LINE L1 5496 5675 -446 245 311 189 0 chr12 110597536 110597626 -33684863 + L2 LINE L2 3164 3270 -2 202 143 48 0 chr12 110597687 110597729 -33684760 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 421 285 32 67 chr12 110597919 110598172 -33684317 - AluJb SINE Alu -32 280 37 216 256 25 66 chr12 110598402 110598523 -33683966 + (CGGGG)n Simple_repeat Simple_repeat 1 116 0 215 303 0 55 chr12 110598480 110598589 -33683900 + G-rich Low_complexity Low_complexity 1 103 0 * 1899 284 57 0 chr12 110598680 110599211 -33683278 - L2 LINE L2 -621 2693 2133 283 186 14 14 chr12 110599215 110599285 -33683204 + Charlie5 DNA MER1_type 6 75 -2537 481 343 42 19 chr12 110599294 110599507 -33682982 - L2 LINE L2 -3090 224 7 395 298 57 0 chr12 110599599 110599723 -33682766 - MIR SINE MIR -96 166 36 291 289 77 10 chr12 110599814 110599918 -33682571 - MIR SINE MIR -48 214 104 196 209 0 0 chr12 110600685 110600728 -33681761 + L2 LINE L2 3224 3266 -6 287 182 0 0 chr12 110600754 110600798 -33681691 + L2 LINE L2 3213 3256 -16 261 0 0 0 chr12 110600815 110600844 -33681645 + (TG)n Simple_repeat Simple_repeat 1 29 0 30 83 0 0 chr12 110602121 110602193 -33680296 + GC_rich Low_complexity Low_complexity 1 72 0 411 290 44 9 chr12 110603905 110604086 -33678403 + MIR SINE MIR 2 191 -63 25 51 0 0 chr12 110604383 110604422 -33678067 + GC_rich Low_complexity Low_complexity 1 39 0 1631 282 25 14 chr12 110605097 110605608 -33676881 - HAL1 LINE L1 -519 1988 1472 27 73 0 0 chr12 110605628 110605683 -33676806 + AT_rich Low_complexity Low_complexity 1 55 0 287 296 7 21 chr12 110606183 110606325 -33676164 + C-rich Low_complexity Low_complexity 5 144 0 38 85 0 21 chr12 110606343 110606484 -33676005 + GC_rich Low_complexity Low_complexity 1 138 0 208 266 14 35 chr12 110606519 110606662 -33675827 + (CCGCG)n Simple_repeat Simple_repeat 1 140 0 14427 97 23 3 chr12 110606858 110608909 -33673580 + HERVL LTR ERVL 2166 4256 -1398 999 54 24 24 chr12 110609846 110610012 -33672477 + (TTTC)n Simple_repeat Simple_repeat 3 168 0 716 299 46 94 chr12 110610510 110611011 -33671478 + L2 LINE L2 2837 3313 0 931 166 114 5 chr12 110611227 110611420 -33671069 - MER106A DNA MER1_type -20 216 3 34 55 0 0 chr12 110611596 110611651 -33670838 + GC_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr12 110611705 110611727 -33670762 + GC_rich Low_complexity Low_complexity 1 22 0 229 30 0 61 chr12 110612158 110612191 -33670298 - MER109 Unknown Unknown -1474 958 928 214 341 23 8 chr12 110614252 110614384 -33668105 + L2 LINE L2 2214 2347 -967 2108 242 60 23 chr12 110614384 110614897 -33667592 - MLT1H LTR MaLR 0 549 18 192 299 13 26 chr12 110614898 110614975 -33667514 + L2 LINE L2 2338 2413 -901 1354 280 67 15 chr12 110615469 110616054 -33666435 + L1MEc LINE L1 1200 1814 -4582 686 263 53 29 chr12 110616487 110616730 -33665759 + L1MEc LINE L1 3533 3781 -2434 545 75 38 0 chr12 110617070 110617150 -33665339 + L1P4 LINE L1 5568 5650 -513 240 224 40 13 chr12 110617391 110617467 -33665022 + L1MC4 LINE L1 6626 6703 -1339 26 50 0 0 chr12 110617946 110617986 -33664503 + AT_rich Low_complexity Low_complexity 1 40 0 2031 103 82 10 chr12 110618714 110619005 -33663484 + AluSx SINE Alu 1 312 0 333 294 40 24 chr12 110619140 110619266 -33663223 - MER94 DNA DNA -2 132 5 334 263 42 42 chr12 110619314 110619432 -33663057 + MIR SINE MIR 2 119 -143 29 28 0 0 chr12 110619737 110619773 -33662716 + GC_rich Low_complexity Low_complexity 1 36 0 2493 231 50 76 chr12 110620451 110621376 -33661113 + L1MEc LINE L1 258 1158 -5238 797 269 15 10 chr12 110621657 110621858 -33660631 - MIR SINE MIR -21 241 40 22 70 0 0 chr12 110622756 110622799 -33659690 + GC_rich Low_complexity Low_complexity 1 43 0 232 271 23 34 chr12 110622824 110623001 -33659488 + (CGGGG)n Simple_repeat Simple_repeat 5 179 0 24 32 0 0 chr12 110623074 110623105 -33659384 + GC_rich Low_complexity Low_complexity 1 31 0 6286 169 11 16 chr12 110623146 110624382 -33658107 + L1P LINE L1 2981 4210 -1936 2531 80 3 0 chr12 110624545 110624856 -33657633 + AluSp SINE Alu 1 312 -1 255 292 52 42 chr12 110624856 110624952 -33657537 + MER5A DNA MER1_type 50 146 -43 794 176 30 146 chr12 110625104 110625371 -33657118 - MER106A DNA MER1_type 0 236 1 443 360 97 47 chr12 110625903 110626325 -33656164 + L2 LINE L2 2829 3271 -1 183 156 0 0 chr12 110627361 110627393 -33655096 + CT-rich Low_complexity Low_complexity 2 33 0 246 32 0 0 chr12 110627597 110627628 -33654861 + (CA)n Simple_repeat Simple_repeat 1 31 0 736 230 73 11 chr12 110628724 110628915 -33653574 + MIR SINE MIR 3 205 -57 526 279 44 58 chr12 110628973 110629199 -33653290 - MIR SINE MIR -15 247 25 803 215 41 73 chr12 110630875 110631088 -33651401 + MIR SINE MIR 31 233 -29 552 298 85 0 chr12 110631196 110631384 -33651105 + MIR SINE MIR 47 250 -12 269 389 0 9 chr12 110632139 110632247 -33650242 + MIR3 SINE MIR 63 169 -39 187 286 52 13 chr12 110632339 110632416 -33650073 + MIR3 SINE MIR 90 169 -39 279 260 100 20 chr12 110632896 110632996 -33649493 + MIR SINE MIR 88 195 -67 192 40 0 0 chr12 110633354 110633379 -33649110 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 212 296 86 33 chr12 110633691 110633843 -33648646 + L2 LINE L2 2093 2252 -1062 540 255 139 50 chr12 110634083 110634454 -33648035 - L2 LINE L2 -2 3311 2871 216 261 0 0 chr12 110634553 110634599 -33647890 + MIR3 SINE MIR 127 172 -36 557 289 330 12 chr12 110634740 110635386 -33647103 - L2 LINE L2 -433 2881 2031 620 305 6 0 chr12 110635861 110636038 -33646451 + MIR SINE MIR 3 180 -82 796 217 88 32 chr12 110636050 110636267 -33646222 - LTR9 LTR ERV1 -83 529 301 4254 72 0 0 chr12 110636267 110636818 -33645671 - L1PA7 LINE L1 0 6154 5637 285 177 81 0 chr12 110636826 110636888 -33645601 + MIR SINE MIR 184 250 -12 238 296 272 0 chr12 110637047 110637128 -33645361 + MIR3 SINE MIR 83 185 -23 438 36 0 0 chr12 110637537 110637593 -33644896 + (CA)n Simple_repeat Simple_repeat 2 57 0 189 242 97 0 chr12 110638556 110638618 -33643871 - MIR SINE MIR 0 262 195 294 348 112 12 chr12 110638881 110639042 -33643447 + MIR SINE MIR 20 196 -66 584 290 45 29 chr12 110639113 110639358 -33643131 - MIR SINE MIR 0 262 14 222 37 0 0 chr12 110639369 110639396 -33643093 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 2377 69 7 0 chr12 110639408 110639713 -33642776 - AluSx SINE Alu -5 307 1 338 250 12 12 chr12 110639747 110639831 -33642658 + L2 LINE L2 3193 3276 -37 1949 186 85 12 chr12 110640071 110640496 -33641993 - MER101 LTR ERV1 -13 461 6 219 311 136 23 chr12 110641445 110641577 -33640912 + MIR SINE MIR 6 152 -110 * 753 196 28 22 chr12 110641575 110641754 -33640735 - MIR SINE MIR -38 224 45 297 0 0 0 chr12 110642933 110642966 -33639523 + (CA)n Simple_repeat Simple_repeat 1 33 0 438 234 38 32 chr12 110643926 110644084 -33638405 + MER103 DNA DNA 4 162 -4 314 294 113 60 chr12 110644413 110644661 -33637828 - MIR SINE MIR 0 262 2 268 342 36 54 chr12 110645997 110646108 -33636381 + L2 LINE L2 3149 3257 -15 2231 89 20 3 chr12 110646582 110646874 -33635615 - AluSg SINE Alu -13 297 1 324 311 146 0 chr12 110647224 110647375 -33635114 + MIR SINE MIR 90 262 0 6792 78 8 3 chr12 110647667 110648962 -33633527 + L1PA8A LINE L1 4814 6118 -13 988 232 21 32 chr12 110648966 110649251 -33633238 - L1ME3A LINE L1 -3 6167 5886 25 99 0 0 chr12 110649390 110649471 -33633018 + AT_rich Low_complexity Low_complexity 1 81 0 229 220 0 0 chr12 110649569 110649619 -33632870 - LTR66 LTR ERVL -166 444 395 226 218 0 0 chr12 110649620 110649675 -33632814 - LTR66 LTR ERVL -171 439 385 416 227 8 0 chr12 110649693 110649812 -33632677 + (TA)n Simple_repeat Simple_repeat 1 120 0 2278 282 33 36 chr12 110651117 110652408 -33630081 - L1ME3A LINE L1 -2 6168 4885 1100 254 77 78 chr12 110652431 110653107 -33629382 - L1ME3A LINE L1 -1459 4687 4013 1749 240 52 30 chr12 110653122 110653717 -33628772 - MLT1E3 LTR MaLR -4 620 1 310 242 100 8 chr12 110653739 110653859 -33628630 - L1ME3A LINE L1 -2169 3977 3847 290 208 42 0 chr12 110653916 110653988 -33628501 + MER116 DNA Mariner 6 80 0 481 302 14 33 chr12 110653999 110654211 -33628278 - L1ME3A LINE L1 -2414 3732 3525 2085 91 43 4 chr12 110654249 110654525 -33627964 + AluSg SINE Alu 1 287 -23 470 306 51 25 chr12 110654831 110655027 -33627462 + MIR SINE MIR 56 256 -6 210 305 94 31 chr12 110655163 110655291 -33627198 + L2 LINE L2 3137 3272 0 1889 138 67 28 chr12 110655632 110655993 -33626496 - THE1C LTR MaLR 0 375 1 363 88 25 125 chr12 110656027 110656107 -33626382 + MER53 DNA DNA 106 177 -12 * 513 98 37 0 chr12 110656046 110656128 -33626361 - MER53 DNA DNA -104 85 1 330 98 0 0 chr12 110657955 110658006 -33624483 + (A)n Simple_repeat Simple_repeat 1 51 0 2002 142 3 0 chr12 110658857 110659277 -33623212 - AluSx SINE Alu 0 312 1 1130 244 46 97 chr12 110659384 110660035 -33622454 - L1ME4a LINE L1 -49 6072 5455 251 247 21 32 chr12 110661154 110661247 -33621242 + CT-rich Low_complexity Low_complexity 3 94 0 549 239 36 126 chr12 110661432 110661679 -33620810 - MIR SINE MIR -15 247 23 2358 97 0 0 chr12 110663646 110663946 -33618543 + AluSq SINE Alu 1 300 -13 237 33 0 0 chr12 110664616 110664646 -33617843 + (TG)n Simple_repeat Simple_repeat 2 31 0 240 35 0 0 chr12 110665852 110665881 -33616608 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 325 264 118 9 chr12 110666252 110666362 -33616127 - MIR SINE MIR -68 140 19 1978 146 130 18 chr12 110666871 110667256 -33615233 - MSTA LTR MaLR 0 428 1 7791 161 27 12 chr12 110667302 110669843 -33612646 - L1MA4A LINE L1 -4 7001 4418 * 11661 188 81 69 chr12 110669838 110669991 -33612498 - L1MA4A LINE L1 -3990 2859 2709 1680 189 3 10 chr12 110669991 110670304 -33612185 - AluJb SINE Alu -1 311 1 11661 188 81 69 chr12 110670304 110671416 -33611073 - L1MA4A LINE L1 -4140 2709 1612 2491 131 5 5 chr12 110671416 110671791 -33610698 - THE1C LTR MaLR 0 375 1 11661 188 81 69 chr12 110671791 110672490 -33609999 - L1MA4A LINE L1 -5237 1612 923 225 239 115 44 chr12 110672490 110672603 -33609886 - MER52A LTR ERV1 -1415 340 220 11661 188 81 69 chr12 110672603 110673343 -33609146 - L1MA4A LINE L1 -5926 923 7 407 306 18 12 chr12 110673490 110673660 -33608829 + (CCA)n Simple_repeat Simple_repeat 3 173 0 903 307 62 3 chr12 110674618 110674957 -33607532 + LTR16A LTR ERVL 92 450 0 459 361 34 10 chr12 110675135 110675340 -33607149 + MIR SINE MIR 18 227 -35 414 252 61 0 chr12 110676760 110676875 -33605614 - MIR SINE MIR -12 250 129 186 244 44 0 chr12 110676924 110676969 -33605520 + MIR SINE MIR 195 241 -21 24 0 0 0 chr12 110676983 110677007 -33605482 + AT_rich Low_complexity Low_complexity 1 24 0 238 333 0 0 chr12 110677184 110677256 -33605233 + CT-rich Low_complexity Low_complexity 2 73 0 1054 209 9 23 chr12 110677690 110677905 -33604584 - MER20 DNA MER1_type 0 219 8 207 182 0 0 chr12 110677938 110677971 -33604518 + (TATG)n Simple_repeat Simple_repeat 3 35 0 404 296 114 42 chr12 110678267 110678575 -33603914 - L1MC/D LINE L1 -2161 5647 5318 254 289 95 13 chr12 110678806 110678980 -33603509 - L1MC/D LINE L1 -1886 4260 4067 270 0 0 0 chr12 110681290 110681320 -33601169 + (A)n Simple_repeat Simple_repeat 1 30 0 947 170 90 55 chr12 110681576 110681888 -33600601 - MER33 DNA MER1_type 0 324 2 1051 293 62 43 chr12 110682387 110683058 -33599431 + L2 LINE L2 2511 3259 -13 243 0 0 0 chr12 110683060 110683087 -33599402 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 24 32 0 0 chr12 110684631 110684662 -33597827 + AT_rich Low_complexity Low_complexity 1 31 0 263 193 12 0 chr12 110684711 110684794 -33597695 + (TAA)n Simple_repeat Simple_repeat 3 86 0 409 289 16 0 chr12 110684805 110684926 -33597563 - MIR SINE MIR -61 201 79 297 276 53 0 chr12 110685297 110685373 -33597116 + L2 LINE L2 3214 3293 -20 401 305 0 91 chr12 110685728 110685882 -33596607 - L2 LINE L2 0 3272 3133 538 289 27 39 chr12 110686101 110686361 -33596128 - MIR SINE MIR -4 258 2 324 294 40 24 chr12 110686409 110686535 -33595954 + MER94 DNA DNA 5 132 -2 2330 49 87 0 chr12 110686672 110686958 -33595531 - AluY SINE Alu 0 311 1 237 83 0 0 chr12 110687149 110687185 -33595304 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 241 325 115 19 chr12 110687185 110687336 -33595153 - L2 LINE L2 -10 3262 3097 237 299 81 11 chr12 110687493 110687580 -33594909 - MIR SINE MIR -50 212 120 259 281 72 79 chr12 110687811 110687950 -33594539 + MIR SINE MIR 100 237 -25 2340 114 23 43 chr12 110688138 110688575 -33593914 + L1MA5A LINE L1 5870 6297 0 404 296 26 0 chr12 110688601 110688716 -33593773 + MIR SINE MIR 47 164 -98 234 308 87 19 chr12 110688748 110688852 -33593637 + L2 LINE L2 3158 3268 -4 342 67 0 0 chr12 110689050 110689095 -33593394 + (TA)n Simple_repeat Simple_repeat 1 45 0 2118 113 3 10 chr12 110689095 110689396 -33593093 - AluSq SINE Alu -14 299 1 371 246 37 90 chr12 110689796 110689930 -33592559 - MIR SINE MIR -19 243 117 201 274 35 71 chr12 110690838 110690918 -33591571 - MIR SINE MIR -126 136 61 713 210 68 23 chr12 110690918 110691094 -33591395 - MER5A DNA MER1_type -2 187 4 234 143 20 41 chr12 110691392 110691441 -33591048 + U7 snRNA snRNA 15 62 -1 876 166 29 40 chr12 110691771 110691946 -33590543 - MER20 DNA MER1_type -7 212 40 21 0 0 0 chr12 110692788 110692809 -33589680 + AT_rich Low_complexity Low_complexity 1 21 0 2096 118 0 3 chr12 110692810 110693098 -33589391 - AluSx SINE Alu -25 287 1 338 278 106 25 chr12 110695130 110695328 -33587161 - L1ME2 LINE L1 -216 5931 5718 289 125 0 0 chr12 110695419 110695467 -33587022 - Alu SINE Alu -2 299 252 236 259 62 47 chr12 110695642 110695835 -33586654 - L1ME2 LINE L1 -858 5271 5076 220 136 23 0 chr12 110695853 110695897 -33586592 + (TTATA)n Simple_repeat Simple_repeat 2 46 0 810 262 37 27 chr12 110696177 110696708 -33585781 - L1ME2 LINE L1 -807 5322 4388 526 287 104 75 chr12 110696723 110698680 -33583809 - L1ME2 LINE L1 -1999 4130 2116 234 140 35 35 chr12 110699040 110699097 -33583392 + T-rich Low_complexity Low_complexity 2 58 0 272 312 65 12 chr12 110699100 110699270 -33583219 - HAL1 LINE L1 -738 1769 1591 740 276 87 79 chr12 110699431 110699812 -33582677 - L1ME2 LINE L1 -4867 1252 876 1486 154 48 39 chr12 110699812 110700123 -33582366 - L1PA16 LINE L1 -9 6157 5844 740 276 87 79 chr12 110700123 110700736 -33581753 - L1ME2 LINE L1 -5243 876 250 1975 109 25 4 chr12 110700736 110701043 -33581446 + AluSc SINE Alu 1 313 0 377 316 128 5 chr12 110701311 110701507 -33580982 + MIR SINE MIR 40 259 -3 1288 64 0 0 chr12 110701507 110701664 -33580825 + AluSc SINE Alu 138 294 -15 1464 234 147 63 chr12 110702213 110702799 -33579690 + MLT1E1 LTR MaLR 9 643 -11 1226 119 10 10 chr12 110702799 110702993 -33579496 - MER107 DNA MER1_type 0 197 4 201 325 130 25 chr12 110703001 110703278 -33579211 - L2 LINE L2 -671 2643 2338 2095 242 60 23 chr12 110703279 110703792 -33578697 + MLT1H LTR MaLR 18 549 0 224 341 23 8 chr12 110703792 110703924 -33578565 - L2 LINE L2 -967 2347 2214 466 285 40 9 chr12 110704324 110704505 -33577984 - MIR SINE MIR -63 145 2 352 376 0 25 chr12 110706645 110706866 -33575623 + C-rich Low_complexity Low_complexity 1 215 0 1104 116 29 6 chr12 110707094 110707266 -33575223 + L1PA15 LINE L1 5778 5953 -212 298 280 54 0 chr12 110707339 110707432 -33575057 + MIR SINE MIR 148 245 -17 2066 80 45 11 chr12 110707552 110707838 -33574651 + AluY SINE Alu 1 296 -15 1437 190 61 29 chr12 110708100 110708379 -33574110 + AluJo SINE Alu 1 288 -24 228 67 0 0 chr12 110708393 110708423 -33574066 + (TA)n Simple_repeat Simple_repeat 1 30 0 736 286 110 40 chr12 110708685 110709458 -33573031 - L1ME4a LINE L1 -49 6072 5256 243 362 86 0 chr12 110710062 110710214 -33572275 - MIR3 SINE MIR 0 208 44 885 263 116 20 chr12 110710674 110711423 -33571066 + L2 LINE L2 2496 3313 0 351 207 107 8 chr12 110711954 110712075 -33570414 + MIR SINE MIR 117 249 -13 359 236 22 22 chr12 110712760 110712849 -33569640 + MLT1J LTR MaLR 1 89 -422 1537 106 126 43 chr12 110712870 110713124 -33569365 + AluSc SINE Alu 1 275 -34 402 21 0 0 chr12 110713124 110713171 -33569318 + (TC)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr12 110713170 110713191 -33569298 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 240 62 77 15 chr12 110713191 110713256 -33569233 + (TA)n Simple_repeat Simple_repeat 2 70 0 241 260 104 0 chr12 110713256 110713333 -33569156 + MLT1J2 LTR MaLR 63 147 -303 358 245 142 52 chr12 110713350 110713562 -33568927 + MLT1J LTR MaLR 241 471 -40 286 331 0 0 chr12 110713884 110713996 -33568493 + L1ME LINE L1 5546 5657 -505 21 0 0 0 chr12 110714447 110714468 -33568021 + AT_rich Low_complexity Low_complexity 1 21 0 811 215 17 0 chr12 110715674 110715846 -33566643 + MER5B DNA MER1_type 2 176 -2 789 258 54 71 chr12 110715937 110716329 -33566160 + L2 LINE L2 2928 3312 -1 377 307 28 28 chr12 110716327 110716506 -33565983 - MIR3 SINE MIR -15 193 15 * 22 0 0 0 chr12 110717545 110717567 -33564922 + AT_rich Low_complexity Low_complexity 1 22 0 206 213 128 0 chr12 110718143 110718190 -33564299 - L2 LINE L2 -17 3296 3244 1982 137 45 24 chr12 110718896 110719232 -33563257 + MER2 DNA MER2_type 1 343 -1 247 380 8 0 chr12 110719486 110719607 -33562882 + L2 LINE L2 3187 3308 -5 327 273 12 91 chr12 110720497 110720552 -33561937 + MIR3 SINE MIR 54 112 -96 2299 91 0 3 chr12 110720552 110720850 -33561639 - AluSg SINE Alu -13 297 1 327 273 12 91 chr12 110720850 110720959 -33561530 + MIR3 SINE MIR 112 205 -3 454 284 42 47 chr12 110721266 110721481 -33561008 + MLT1J LTR MaLR 220 433 -78 498 234 0 22 chr12 110721497 110721681 -33560808 + GA-rich Low_complexity Low_complexity 1 180 0 563 153 5 68 chr12 110721742 110721932 -33560557 + GA-rich Low_complexity Low_complexity 3 180 0 822 127 19 6 chr12 110721955 110722113 -33560376 + GA-rich Low_complexity Low_complexity 3 162 0 756 237 155 0 chr12 110723109 110723303 -33559186 + MER58A DNA MER1_type 1 224 0 515 289 88 101 chr12 110723337 110723891 -33558598 + LTR67 LTR ERVL 9 555 -2 183 320 93 0 chr12 110723962 110724037 -33558452 - MIR SINE MIR -81 181 100 388 294 68 45 chr12 110725045 110725399 -33557090 + L1ME4a LINE L1 5496 5857 -264 209 311 189 0 chr12 110725444 110725534 -33556955 + L2 LINE L2 3164 3270 -2 202 143 48 0 chr12 110725595 110725637 -33556852 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 1394 217 32 7 chr12 110725817 110726098 -33556391 - AluJo SINE Alu -24 288 1 235 244 39 26 chr12 110727867 110727945 -33554544 - MIR SINE MIR -66 196 118 264 218 18 0 chr12 110728065 110728120 -33554369 + CT-rich Low_complexity Low_complexity 1 56 0 203 291 213 7 chr12 110728291 110728432 -33554057 + MIR SINE MIR 11 180 -82 281 254 8 40 chr12 110729509 110729635 -33552854 + GA-rich Low_complexity Low_complexity 2 123 0 341 276 9 27 chr12 110730051 110730278 -33552211 + CT-rich Low_complexity Low_complexity 1 222 0 1231 247 86 36 chr12 110731379 110731856 -33550633 - LTR33 LTR ERVL -9 512 12 545 265 67 29 chr12 110731929 110732167 -33550322 - L2 LINE L2 -54 3259 3013 1108 53 29 10 chr12 110732919 110733131 -33549358 + (GAAA)n Simple_repeat Simple_repeat 1 216 0 288 53 0 0 chr12 110734776 110734814 -33547675 + (CA)n Simple_repeat Simple_repeat 2 39 0 235 120 20 20 chr12 110736032 110736082 -33546407 + CT-rich Low_complexity Low_complexity 2 51 0 384 99 25 12 chr12 110737073 110737154 -33545335 + (CTG)n Simple_repeat Simple_repeat 3 84 0 286 360 0 0 chr12 110737935 110738035 -33544454 + C-rich Low_complexity Low_complexity 1 100 0 256 267 122 15 chr12 110738487 110738618 -33543871 + MIR3 SINE MIR 43 187 -21 263 280 32 32 chr12 110740071 110740164 -33542325 + MIR SINE MIR 55 135 -73 240 297 159 16 chr12 110740889 110741071 -33541418 + MIR SINE MIR 40 247 -15 21 36 0 0 chr12 110742182 110742210 -33540279 + AT_rich Low_complexity Low_complexity 1 28 0 226 250 73 0 chr12 110745362 110745430 -33537059 + MIR SINE MIR 180 252 -10 209 242 242 22 chr12 110745969 110746060 -33536429 + MIR3 SINE MIR 78 188 -20 244 294 122 22 chr12 110746626 110746765 -33535724 + MER5A DNA MER1_type 25 188 -1 213 372 60 4 chr12 110746992 110747226 -33535263 + L2 LINE L2 690 936 -2378 604 205 181 68 chr12 110747453 110747769 -33534720 + MLT2B1 LTR ERVL 74 520 0 219 342 26 8 chr12 110747779 110747896 -33534593 + L2 LINE L2 1905 2023 -1291 320 330 77 37 chr12 110747924 110748273 -33534216 + L2 LINE L2 2135 2497 -817 315 85 0 0 chr12 110748291 110748338 -33534151 + (CA)n Simple_repeat Simple_repeat 2 48 0 17314 141 38 23 chr12 110748653 110751451 -33531038 + L1MA3 LINE L1 22 2862 -4703 7390 200 16 7 chr12 110751452 110753791 -33528698 - L1PA15 LINE L1 -1 7602 5210 4699 268 80 28 chr12 110753791 110757527 -33524962 - L1PA15 LINE L1 -3601 3983 3 13820 167 28 11 chr12 110757534 110758274 -33524215 + L1MA3 LINE L1 2852 3578 -4146 2614 100 16 3 chr12 110758274 110758643 -33523846 - THE1C LTR MaLR -1 374 1 13820 167 28 11 chr12 110758643 110762683 -33519806 + L1MA3 LINE L1 3578 7724 0 522 261 0 23 chr12 110763499 110763629 -33518860 + L2 LINE L2 3171 3297 -16 268 326 41 64 chr12 110763637 110763855 -33518634 - L2 LINE L2 -16 3256 3044 1395 242 100 16 chr12 110764219 110764798 -33517691 - MER69B DNA AcHobo -2 1224 597 990 293 57 25 chr12 110764839 110765245 -33517244 - MER69B DNA AcHobo -807 419 1 344 183 85 0 chr12 110765332 110765414 -33517075 + MIR SINE MIR 81 169 -93 576 311 116 24 chr12 110765611 110766081 -33516408 + L2 LINE L2 2401 2970 -343 1699 124 0 28 chr12 110766249 110766531 -33515958 - THE1C LTR MaLR 0 375 102 1430 65 10 0 chr12 110767140 110767340 -33515149 + L1MA3 LINE L1 6102 6303 -2 22 0 0 0 chr12 110767341 110767363 -33515126 + AT_rich Low_complexity Low_complexity 1 22 0 242 298 60 124 chr12 110767985 110768203 -33514286 - L2 LINE L2 -23 3249 3046 1419 222 61 3 chr12 110768495 110768855 -33513634 + MER63B DNA MER1_type 1 381 -55 532 66 26 0 chr12 110768899 110768975 -33513514 + MADE1 DNA Mariner 3 80 0 632 322 103 38 chr12 110769007 110769482 -33513007 + L2 LINE L2 2805 3310 -3 1011 279 57 59 chr12 110769993 110770498 -33511991 - MLT1J LTR MaLR -7 504 1 493 296 65 23 chr12 110770624 110770840 -33511649 - LTR40b LTR ERVL -118 344 120 315 275 58 33 chr12 110770905 110771025 -33511464 - LTR40b LTR ERVL -283 179 77 309 291 112 15 chr12 110771793 110771927 -33510562 + L1MC4a LINE L1 5340 5486 -2322 401 242 23 31 chr12 110772537 110772665 -33509824 - MER94 DNA DNA -6 128 2 818 241 30 71 chr12 110772669 110773003 -33509486 + L1MC4a LINE L1 5569 5885 -1923 2092 128 3 3 chr12 110773003 110773299 -33509190 + AluSc SINE Alu 1 296 -13 818 241 30 71 chr12 110773299 110773371 -33509118 + L1MC4a LINE L1 5885 5958 -1850 687 304 64 43 chr12 110774122 110774697 -33507792 + L1ME2 LINE L1 5299 5885 -279 5011 104 12 5 chr12 110775449 110776191 -33506298 + L1MA2 LINE L1 5557 6303 -1 363 336 67 0 chr12 110776347 110776496 -33505993 + MIR SINE MIR 86 244 -18 183 393 67 0 chr12 110776778 110776867 -33505622 + L2 LINE L2 3200 3294 -19 198 91 0 0 chr12 110776901 110776934 -33505555 + (A)n Simple_repeat Simple_repeat 1 33 0 273 57 0 0 chr12 110777013 110777048 -33505441 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 472 251 163 25 chr12 110777337 110777540 -33504949 + L2 LINE L2 3075 3305 -8 415 236 24 31 chr12 110778653 110778780 -33503709 + MIR3 SINE MIR 40 165 -43 302 328 98 11 chr12 110779690 110779864 -33502625 - MER5A DNA MER1_type 0 189 1 477 256 60 8 chr12 110780046 110780179 -33502310 + MIR3 SINE MIR 32 171 -37 719 236 34 56 chr12 110780972 110781205 -33501284 + MIR SINE MIR 25 252 -10 376 369 56 0 chr12 110781944 110782104 -33500385 - MIR SINE MIR -70 192 24 322 351 60 8 chr12 110782197 110782331 -33500158 + L2 LINE L2 3124 3264 -8 492 303 21 28 chr12 110782782 110782924 -33499565 + MIR SINE MIR 20 160 -102 233 267 107 27 chr12 110783265 110783415 -33499074 + MER103 DNA DNA 2 163 -3 707 237 28 47 chr12 110783913 110784124 -33498365 - MIR SINE MIR -54 208 2 860 175 21 26 chr12 110784131 110784320 -33498169 - MER45C DNA AcHobo 0 953 766 733 288 67 47 chr12 110784570 110784841 -33497648 - MER45C DNA AcHobo -585 368 87 2229 85 0 0 chr12 110784841 110785123 -33497366 + AluY SINE Alu 16 297 -14 733 288 67 47 chr12 110785123 110785212 -33497277 - MER45C DNA AcHobo -866 87 1 30 27 0 0 chr12 110785461 110785498 -33496991 + AT_rich Low_complexity Low_complexity 1 37 0 2105 120 0 0 chr12 110785526 110785809 -33496680 - AluSx SINE Alu -19 293 11 527 184 48 16 chr12 110785921 110786046 -33496443 + L1MC3 LINE L1 7140 7268 -517 2344 164 21 50 chr12 110786104 110786368 -33496121 + L1MC3 LINE L1 7253 7496 -289 2096 100 55 7 chr12 110786368 110786658 -33495831 + AluSq SINE Alu 1 304 -9 2344 164 21 50 chr12 110786658 110786916 -33495573 + L1MC3 LINE L1 7496 7760 -25 282 29 0 0 chr12 110787239 110787274 -33495215 + (TG)n Simple_repeat Simple_repeat 2 36 0 243 163 0 20 chr12 110787373 110787422 -33495067 - MIR SINE MIR -100 162 115 1947 140 3 44 chr12 110787578 110787899 -33494590 + AluSx SINE Alu 1 308 -4 542 263 77 16 chr12 110787985 110788170 -33494319 - MIR SINE MIR -61 147 2 197 215 266 13 chr12 110788183 110788262 -33494227 - MER5B DNA MER1_type -19 159 61 632 207 8 0 chr12 110788679 110788800 -33493689 + MIR SINE MIR 84 205 -57 501 303 72 22 chr12 110788958 110789499 -33492990 - L1ME LINE L1 -297 5824 5257 202 315 0 0 chr12 110789658 110789712 -33492777 + MER5B DNA MER1_type 125 178 0 383 311 66 22 chr12 110789739 110789922 -33492567 - MIR SINE MIR -25 237 47 483 244 9 0 chr12 110790963 110791078 -33491411 - MER103 DNA DNA -49 117 2 416 381 0 0 chr12 110791201 110791348 -33491141 + MIR SINE MIR 6 152 -110 2121 120 0 40 chr12 110792088 110792413 -33490076 - AluSx SINE Alu 0 312 1 1101 295 71 33 chr12 110792942 110793668 -33488821 + L2 LINE L2 2557 3306 -7 267 323 101 0 chr12 110794126 110794225 -33488264 - MIR SINE MIR -112 150 42 364 215 34 3 chr12 110795117 110795222 -33487267 + AluY SINE Alu 3 80 -221 2770 26 0 0 chr12 110796019 110796328 -33486161 - AluYa5 SINE Alu -2 309 1 239 266 13 13 chr12 110796337 110796416 -33486073 - L1ME LINE L1 -302 5819 5741 294 143 0 0 chr12 110798415 110798464 -33484025 + (TA)n Simple_repeat Simple_repeat 1 49 0 461 316 131 26 chr12 110798476 110798980 -33483509 + L1ME LINE L1 5264 5820 -301 1070 308 116 32 chr12 110799277 110799988 -33482501 + L2 LINE L2 2530 3305 -8 240 35 0 0 chr12 110800009 110800038 -33482451 + (TA)n Simple_repeat Simple_repeat 2 30 0 2213 95 0 26 chr12 110800038 110800343 -33482146 - AluSx SINE Alu -15 297 1 419 322 96 5 chr12 110800367 110800575 -33481914 - MIR SINE MIR -1 261 35 25 31 0 0 chr12 110801253 110801285 -33481204 + AT_rich Low_complexity Low_complexity 1 32 0 217 379 0 0 chr12 110801332 110801435 -33481054 + MIR SINE MIR 160 262 0 250 250 0 0 chr12 110801455 110801523 -33480966 + T-rich Low_complexity Low_complexity 1 68 0 841 154 0 0 chr12 110801524 110801660 -33480829 - L1PA15 LINE L1 -2 6163 6028 616 227 7 0 chr12 110801660 110801814 -33480675 + L1P LINE L1 4850 5004 -1142 352 320 77 33 chr12 110801887 110802068 -33480421 + L2 LINE L2 3082 3270 -2 507 276 175 40 chr12 110802151 110802379 -33480110 + MIR SINE MIR 4 262 0 2289 125 0 0 chr12 110802478 110802791 -33479698 - AluSp SINE Alu 0 313 1 3735 157 23 11 chr12 110802791 110803493 -33478996 - L1MC2 LINE L1 -11 6333 5624 269 262 166 43 chr12 110804175 110804362 -33478127 + MIR SINE MIR 35 244 -18 275 240 130 50 chr12 110804470 110804570 -33477919 - MIR3 SINE MIR -25 183 76 183 354 62 18 chr12 110804604 110804717 -33477772 - L2 LINE L2 -53 3219 3102 2278 95 0 3 chr12 110804812 110805108 -33477381 - AluSx SINE Alu -17 295 1 951 102 28 11 chr12 110806328 110806505 -33475984 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 317 246 131 8 chr12 110807629 110807751 -33474738 + MIR SINE MIR 78 214 -48 222 233 19 10 chr12 110808648 110808751 -33473738 + CT-rich Low_complexity Low_complexity 4 107 0 314 296 78 0 chr12 110809008 110809123 -33473366 - L2 LINE L2 -2 3311 3188 597 264 55 0 chr12 110810926 110811089 -33471400 + MIR SINE MIR 77 248 -14 289 342 27 9 chr12 110811346 110811457 -33471032 - MIR SINE MIR -118 144 32 635 250 107 5 chr12 110811908 110812104 -33470385 - MIR SINE MIR -21 241 26 215 59 0 29 chr12 110812375 110812409 -33470080 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 251 53 0 26 chr12 110812907 110812945 -33469544 + (TCC)n Simple_repeat Simple_repeat 3 39 0 311 326 94 11 chr12 110812976 110813157 -33469332 - MIR SINE MIR -2 260 65 27 0 0 0 chr12 110813223 110813250 -33469239 + AT_rich Low_complexity Low_complexity 1 27 0 308 214 11 11 chr12 110813250 110813339 -33469150 + L1MC4 LINE L1 6614 6702 -1340 605 291 38 38 chr12 110813372 110813609 -33468880 - MIR SINE MIR -24 238 2 3896 161 44 38 chr12 110813770 110814585 -33467904 + L1MA9 LINE L1 5473 6292 -20 2198 120 0 0 chr12 110814599 110814890 -33467599 + AluSg SINE Alu 1 291 -19 49 76 0 0 chr12 110814890 110814995 -33467494 + AT_rich Low_complexity Low_complexity 1 105 0 342 291 97 19 chr12 110815064 110815270 -33467219 + L2 LINE L2 3084 3305 -8 619 271 7 0 chr12 110815819 110815963 -33466526 + MIR SINE MIR 96 240 -22 481 253 33 33 chr12 110816153 110816303 -33466186 + MIR SINE MIR 16 165 -97 188 347 48 32 chr12 110816950 110817074 -33465415 + MIR SINE MIR 42 167 -95 359 193 26 18 chr12 110817179 110817293 -33465196 + CT-rich Low_complexity Low_complexity 3 117 0 1874 131 4 8 chr12 110817786 110818054 -33464435 + AluSx SINE Alu 1 267 -45 208 211 0 0 chr12 110818486 110818524 -33463965 + C-rich Low_complexity Low_complexity 5 42 0 230 79 0 26 chr12 110819959 110819997 -33462492 + (TA)n Simple_repeat Simple_repeat 2 38 0 222 292 0 31 chr12 110821188 110821253 -33461236 + CT-rich Low_complexity Low_complexity 4 66 0 244 326 80 0 chr12 110821288 110821426 -33461063 - MIR SINE MIR -6 256 108 274 265 129 14 chr12 110821995 110822142 -33460347 - MER103 DNA DNA -2 164 1 21 0 0 0 chr12 110822221 110822242 -33460247 + AT_rich Low_complexity Low_complexity 1 21 0 942 271 141 13 chr12 110822383 110822766 -33459723 - MLT1J2 LTR MaLR -18 432 1 2173 125 7 0 chr12 110822936 110823225 -33459264 - AluSq SINE Alu -22 291 1 959 256 33 83 chr12 110823460 110823925 -33458564 - LTR37B LTR ERV1 0 468 -18 324 0 0 0 chr12 110823925 110823961 -33458528 + (TA)n Simple_repeat Simple_repeat 2 37 0 2393 107 3 0 chr12 110823961 110824270 -33458219 - AluSq SINE Alu -3 310 1 959 256 33 83 chr12 110824270 110824287 -33458202 - LTR37B LTR ERV1 -443 25 9 638 326 74 25 chr12 110824460 110825002 -33457487 - L2 LINE L2 -264 3008 2430 429 390 14 0 chr12 110825406 110825629 -33456860 - MIR SINE MIR -18 244 19 336 297 27 77 chr12 110826400 110826659 -33455830 - L1ME4a LINE L1 0 6121 5876 237 177 32 0 chr12 110827702 110827764 -33454725 + L1MC4 LINE L1 6639 6702 -1340 227 220 22 33 chr12 110827779 110827870 -33454619 - L1MC4 LINE L1 -1339 6703 6614 312 256 47 0 chr12 110827874 110827960 -33454529 - L1MC4 LINE L1 -1339 6703 6614 360 64 0 0 chr12 110827984 110828031 -33454458 + (GA)n Simple_repeat Simple_repeat 2 48 0 226 299 80 29 chr12 110828592 110828729 -33453760 + MIR SINE MIR 107 250 -12 192 216 0 0 chr12 110829353 110829404 -33453085 + (TG)n Simple_repeat Simple_repeat 2 52 0 340 370 125 9 chr12 110830301 110830525 -33451964 - MIR SINE MIR 0 262 13 1244 224 11 14 chr12 110831034 110831311 -33451178 - MER82 DNA MER2_type -20 633 358 496 227 117 35 chr12 110831575 110831826 -33450663 + L2 LINE L2 2998 3272 0 746 317 115 25 chr12 110832016 110832458 -33450031 - MLT1K LTR MaLR -46 542 61 383 266 84 44 chr12 110832592 110832818 -33449671 - MIR SINE MIR -2 260 26 4248 81 17 3 chr12 110833278 110833856 -33448633 - L1PA13 LINE L1 -8 6155 5570 38999 52 7 2 chr12 110833856 110839505 -33442984 - L1PA5 LINE L1 0 6154 484 304 256 104 32 chr12 110839520 110839645 -33442844 - MER5A DNA MER1_type -4 185 52 23 54 0 0 chr12 110839773 110839810 -33442679 + AT_rich Low_complexity Low_complexity 1 37 0 326 101 0 63 chr12 110839810 110839889 -33442600 - L1MA7 LINE L1 -9 6282 6209 228 35 0 0 chr12 110840994 110841023 -33441466 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 259 276 35 76 chr12 110841171 110841316 -33441173 + MIR SINE MIR 116 254 -8 204 204 0 23 chr12 110841441 110841485 -33441004 - MIR SINE MIR 0 262 220 220 262 288 0 chr12 110841486 110841677 -33440812 + L3 LINE CR1 1329 1574 -3 751 221 175 14 chr12 110841851 110842068 -33440421 + MIR SINE MIR 11 262 0 653 315 44 8 chr12 110842551 110842802 -33439687 - MIR SINE MIR 0 262 3 1681 204 13 16 chr12 110844714 110845027 -33437462 - AluJo SINE Alu 0 312 1 270 197 15 15 chr12 110845157 110845223 -33437266 + MIR SINE MIR 61 126 -136 1869 234 19 18 chr12 110846307 110846821 -33435668 + L2 LINE L2 2155 2669 -645 701 273 93 61 chr12 110847656 110848313 -33434176 + L2 LINE L2 2633 3313 0 395 322 7 14 chr12 110848584 110848727 -33433762 + MIR3 SINE MIR 64 205 -3 25 51 0 0 chr12 110849747 110849786 -33432703 + AT_rich Low_complexity Low_complexity 1 39 0 398 329 59 0 chr12 110850009 110850161 -33432328 + MIR3 SINE MIR 45 205 -3 2931 168 8 77 chr12 110850776 110851371 -33431118 - MLT2B3 LTR ERVL 0 554 1 518 261 0 0 chr12 110852668 110852787 -33429702 + L2 LINE L2 3195 3313 0 237 280 46 80 chr12 110853946 110854121 -33428368 - MLT1K LTR MaLR -413 175 7 388 281 37 15 chr12 110854271 110854406 -33428083 - MIR SINE MIR -88 174 37 644 236 21 87 chr12 110854645 110854886 -33427603 + MIR SINE MIR 38 262 0 26 30 0 0 chr12 110855511 110855544 -33426945 + AT_rich Low_complexity Low_complexity 1 33 0 232 398 81 12 chr12 110856122 110856283 -33426206 - MER5A DNA MER1_type -4 185 14 332 305 153 0 chr12 110857836 110857967 -33424522 + MER5A DNA MER1_type 2 152 -37 386 293 80 20 chr12 110858014 110858164 -33424325 + MIR3 SINE MIR 42 200 -8 225 285 154 0 chr12 110858889 110859019 -33423470 + L2 LINE L2 3152 3301 -12 2228 112 3 0 chr12 110859174 110859461 -33423028 - AluSx SINE Alu -22 290 3 192 290 43 14 chr12 110859532 110859601 -33422888 + L2 LINE L2 3242 3312 -1 276 30 0 0 chr12 110859819 110859852 -33422637 + (CA)n Simple_repeat Simple_repeat 2 34 0 513 140 33 33 chr12 110859912 110860046 -33422443 + L1MA7 LINE L1 6113 6257 -43 633 252 0 0 chr12 110860055 110860296 -33422193 + (TATATG)n Simple_repeat Simple_repeat 1 241 0 272 156 31 0 chr12 110860296 110860360 -33422129 + L1MA7 LINE L1 6216 6281 -10 1718 101 48 4 chr12 110861637 110861935 -33420554 - AluSq SINE Alu 0 337 29 295 318 72 80 chr12 110862199 110862463 -33420026 + MIR SINE MIR 1 262 0 26163 43 38 2 chr12 110862628 110866099 -33416390 + L1P LINE L1 1 3595 -2551 332 305 153 0 chr12 110866554 110866685 -33415804 + MER5A DNA MER1_type 2 152 -37 386 293 80 20 chr12 110866732 110866882 -33415607 + MIR3 SINE MIR 42 200 -8 225 285 154 0 chr12 110867606 110867736 -33414753 + L2 LINE L2 3152 3301 -12 2780 38 3 3 chr12 110867772 110868144 -33414345 + L1P LINE L1 2347 2718 -3428 562 243 66 11 chr12 110868249 110868430 -33414059 + AluJb SINE Alu 113 303 -9 250 302 233 0 chr12 110869607 110869736 -33412753 + MIR SINE MIR 103 261 -1 443 107 13 0 chr12 110869743 110869818 -33412671 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 325 296 59 44 chr12 110870276 110870411 -33412078 + L2 LINE L2 3173 3309 -4 182 167 0 24 chr12 110870668 110870710 -33411779 + GA-rich Low_complexity Low_complexity 3 43 0 209 297 0 0 chr12 110871824 110871888 -33410601 + C-rich Low_complexity Low_complexity 5 68 0 232 307 61 26 chr12 110872589 110872703 -33409786 - MIR SINE MIR -72 136 19 790 303 60 59 chr12 110873063 110873633 -33408856 + L2 LINE L2 2753 3313 0 933 167 96 5 chr12 110873849 110874047 -33408442 - MER106A DNA MER1_type -20 216 1 312 217 0 0 chr12 110874589 110874649 -33407840 - L2 LINE L2 -2 3311 3252 3022 177 44 3 chr12 110875108 110875679 -33406810 - MER6A DNA MER2_type -11 594 1 989 232 69 19 chr12 110876226 110876637 -33405852 + MLT1D LTR MaLR 1 474 -31 1651 156 38 61 chr12 110876637 110876983 -33405506 - MER44D DNA MER2_type 0 609 2 989 232 69 19 chr12 110876983 110877017 -33405472 + MLT1D LTR MaLR 474 505 0 276 326 183 36 chr12 110877021 110877518 -33404971 + L2 LINE L2 2218 2787 -527 1830 226 87 45 chr12 110877785 110878317 -33404172 + MLT2B3 LTR ERVL 1 554 0 224 331 116 12 chr12 110878361 110878533 -33403956 + L2 LINE L2 3042 3231 -82 208 302 0 0 chr12 110879300 110879353 -33403136 + L2 LINE L2 3256 3308 -5 250 261 163 11 chr12 110879786 110879878 -33402611 - MER63B DNA MER1_type -8 428 323 1335 176 38 41 chr12 110880073 110880414 -33402075 - MER63B DNA MER1_type -96 340 1 1660 132 79 8 chr12 110880453 110880719 -33401770 + AluSx SINE Alu 21 305 -7 603 108 27 9 chr12 110880734 110880845 -33401644 + GA-rich Low_complexity Low_complexity 4 116 0 5340 81 0 0 chr12 110880938 110881642 -33400847 + L1PA8 LINE L1 5469 6172 0 1118 212 25 7 chr12 110881656 110881939 -33400550 + L1MDa LINE L1 957 1244 -5296 208 302 0 0 chr12 110882387 110882440 -33400049 + L2 LINE L2 3256 3308 -5 250 261 163 11 chr12 110882874 110882966 -33399523 - MER63B DNA MER1_type -8 428 323 1335 176 38 41 chr12 110883161 110883502 -33398987 - MER63B DNA MER1_type -96 340 1 1731 127 75 8 chr12 110883541 110883808 -33398681 + AluSx SINE Alu 21 305 -7 603 108 27 9 chr12 110883823 110883934 -33398555 + GA-rich Low_complexity Low_complexity 4 116 0 5162 83 9 0 chr12 110884028 110884717 -33397772 + L1PA10 LINE L1 5470 6164 -4 233 229 143 57 chr12 110884744 110884849 -33397640 - MIR SINE MIR -72 190 77 236 283 27 14 chr12 110885231 110885354 -33397135 - MLT1K LTR MaLR -337 278 153 3491 263 54 52 chr12 110885485 110887243 -33395246 + L1MD2 LINE L1 36 1796 -4600 468 243 86 7 chr12 110887242 110887394 -33395095 + L1MD2 LINE L1 1651 1814 -4582 * 769 226 44 56 chr12 110887827 110888079 -33394410 + L1MD2 LINE L1 3533 3781 -2434 279 283 20 20 chr12 110888082 110888181 -33394308 + L1MD2 LINE L1 3837 3935 -2280 291 231 15 46 chr12 110888378 110888508 -33393981 + GA-rich Low_complexity Low_complexity 6 131 0 208 355 8 8 chr12 110888714 110888835 -33393654 + GA-rich Low_complexity Low_complexity 3 123 0 3783 226 44 84 chr12 110888953 110889648 -33392841 + L1MD2 LINE L1 3837 4559 -1869 1968 161 48 22 chr12 110889648 110890003 -33392486 + THE1B LTR MaLR 1 364 0 11942 95 1 1 chr12 110890003 110891583 -33390906 + THE1B-int LTR MaLR 1 1580 0 1468 131 165 58 chr12 110891584 110891912 -33390577 + THE1B LTR MaLR 2 364 0 3783 226 44 84 chr12 110891912 110892944 -33389545 + L1MD2 LINE L1 4558 5630 -798 516 16 0 0 chr12 110892944 110893005 -33389484 + (TA)n Simple_repeat Simple_repeat 1 61 0 3783 226 44 84 chr12 110893005 110893768 -33388721 + L1MD2 LINE L1 5630 6209 -219 255 61 0 0 chr12 110893768 110893801 -33388688 + (CA)n Simple_repeat Simple_repeat 2 34 0 3783 226 44 84 chr12 110893801 110893988 -33388501 + L1MD2 LINE L1 6209 6402 -26 1706 229 31 33 chr12 110894022 110894542 -33387947 + L1ME1 LINE L1 5603 6121 -45 422 279 31 0 chr12 110894434 110894595 -33387894 + L1MA10 LINE L1 6169 6334 0 * 377 297 8 16 chr12 110895041 110895169 -33387320 - MLT1H LTR MaLR -381 168 42 592 320 64 26 chr12 110896943 110897177 -33385312 - MIR SINE MIR -12 250 8 207 318 139 33 chr12 110897191 110897342 -33385147 - MIR SINE MIR -62 146 21 205 318 24 24 chr12 110897365 110897450 -33385039 + MIR SINE MIR 31 115 -147 1776 222 43 9 chr12 110897727 110898169 -33384320 + MLT1C LTR MaLR 7 463 -4 1515 208 72 28 chr12 110898187 110898620 -33383869 - MLT1H LTR MaLR -7 542 91 2572 119 8 0 chr12 110898719 110899090 -33383399 - L1PA15 LINE L1 -1 6164 5791 253 269 10 67 chr12 110899090 110899194 -33383295 - MLT1H LTR MaLR -444 105 8 511 311 26 33 chr12 110899751 110900053 -33382436 - MER102b DNA MER1_type -35 306 7 374 274 20 107 chr12 110900332 110900529 -33381960 + MER5A DNA MER1_type 10 189 0 1026 114 25 0 chr12 110900679 110900837 -33381652 + L1PA15 LINE L1 5792 5953 -212 243 288 62 0 chr12 110900910 110900990 -33381499 + MIR SINE MIR 148 232 -30 230 385 16 0 chr12 110901182 110901304 -33381185 + GA-rich Low_complexity Low_complexity 52 175 0 43 76 0 0 chr12 110902917 110903009 -33379480 + AT_rich Low_complexity Low_complexity 1 92 0 235 259 28 28 chr12 110904322 110904430 -33378059 + (CATATA)n Simple_repeat Simple_repeat 5 112 0 26 50 0 0 chr12 110908483 110908523 -33373966 + AT_rich Low_complexity Low_complexity 1 40 0 207 0 0 0 chr12 110916136 110916159 -33366330 + (A)n Simple_repeat Simple_repeat 1 23 0 381 22 0 0 chr12 110916640 110916686 -33365803 + (TC)n Simple_repeat Simple_repeat 2 47 0 270 0 0 0 chr12 110922988 110923018 -33359471 + (A)n Simple_repeat Simple_repeat 1 30 0 38 51 0 0 chr12 110923588 110923647 -33358842 + AT_rich Low_complexity Low_complexity 1 59 0 182 0 77 26 chr12 110924991 110925030 -33357459 + GA-rich Low_complexity Low_complexity 2 42 0 252 77 0 0 chr12 110926148 110926187 -33356302 + (TG)n Simple_repeat Simple_repeat 2 40 0 204 40 0 0 chr12 110930376 110930401 -33352088 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr12 110939138 110939159 -33343330 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 110939532 110939553 -33342936 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr12 110941505 110941535 -33340954 + AT_rich Low_complexity Low_complexity 1 30 0 1429 238 32 4 chr12 110943198 110943673 -33338816 + L1M4 LINE L1 2862 3349 -2797 227 167 0 0 chr12 110944780 110944816 -33337673 - MIR SINE MIR -12 250 215 586 306 0 6 chr12 110945329 110945489 -33337000 - MIR SINE MIR -44 218 60 311 333 8 8 chr12 110946845 110946962 -33335527 + MIR3 SINE MIR 45 161 -47 2194 220 54 45 chr12 110947221 110947799 -33334690 - MER119 DNA MER1_type 0 583 1 1305 282 118 14 chr12 110947944 110948732 -33333757 - L2 LINE L2 -3 3310 2439 433 281 78 0 chr12 110953196 110953352 -33329137 - MIR SINE MIR -71 191 19 285 269 117 14 chr12 110953866 110954035 -33328454 - MIR SINE MIR -37 225 33 381 22 0 0 chr12 110954075 110954121 -33328368 + (CA)n Simple_repeat Simple_repeat 2 47 0 1696 260 74 21 chr12 110954348 110954602 -33327887 - MLT1F LTR MaLR 0 542 303 2566 46 3 0 chr12 110954602 110954908 -33327581 - AluY SINE Alu -4 307 1 1696 260 74 21 chr12 110954908 110955168 -33327321 - MLT1F LTR MaLR -239 303 1 364 226 36 0 chr12 110955401 110955485 -33327004 - L2 LINE L2 0 3272 3186 409 224 24 73 chr12 110955971 110956136 -33326353 + MIR SINE MIR 102 258 -4 411 226 38 9 chr12 110956537 110956669 -33325820 + L1PA16 LINE L1 6057 6166 0 22 0 0 0 chr12 110958887 110958909 -33323580 + AT_rich Low_complexity Low_complexity 1 22 0 728 62 10 0 chr12 110959241 110959338 -33323151 + L1PA7 LINE L1 6055 6152 -2 379 273 97 28 chr12 110959723 110959899 -33322590 - MIR SINE MIR -12 250 63 2213 112 3 0 chr12 110960349 110960645 -33321844 - AluSx SINE Alu -13 299 3 976 34 0 0 chr12 110961025 110961143 -33321346 - L1PA5 LINE L1 -3 6151 6034 184 231 0 0 chr12 110961189 110961228 -33321261 + L2 LINE L2 3274 3312 -1 483 252 0 65 chr12 110961367 110961506 -33320983 - MER94 DNA DNA 0 134 5 27 73 0 0 chr12 110961903 110961958 -33320531 + AT_rich Low_complexity Low_complexity 1 55 0 1603 282 25 14 chr12 110961978 110962489 -33320000 + HAL1 LINE L1 1472 1988 -519 871 282 58 0 chr12 110962733 110962974 -33319515 + MIR SINE MIR 6 260 -2 314 248 50 33 chr12 110963271 110963392 -33319097 - LTR67 LTR ERVL 0 557 435 1040 248 46 23 chr12 110963842 110964145 -33318344 + MLT1I LTR MaLR 98 407 -2 524 296 54 16 chr12 110965401 110965587 -33316902 + MIR SINE MIR 64 256 -6 233 329 12 12 chr12 110965593 110965678 -33316811 - MIR SINE MIR -60 148 64 503 232 32 10 chr12 110966174 110966345 -33316144 + MIR SINE MIR 23 245 -17 656 286 35 20 chr12 110966793 110966992 -33315497 + MIR SINE MIR 40 241 -21 1285 71 11 33 chr12 110967490 110967673 -33314816 - L1PA7 LINE L1 -8 6146 5968 265 229 21 73 chr12 110967705 110967801 -33314688 + L2 LINE L2 2309 2399 -915 1758 165 10 10 chr12 110968629 110968920 -33313569 - AluJo SINE Alu -17 295 5 222 286 16 0 chr12 110969751 110969814 -33312675 + MIR SINE MIR 49 112 -150 3611 94 4 2 chr12 110970391 110970891 -33311598 - L1PA13 LINE L1 -11 6152 5652 1605 108 0 0 chr12 110970892 110971115 -33311374 + L1PA13 LINE L1 5428 5650 -513 2359 132 22 0 chr12 110971894 110972250 -33310239 - THE1B LTR MaLR 0 364 1 218 290 9 65 chr12 110972982 110973089 -33309400 + L2 LINE L2 3045 3145 -168 360 164 0 0 chr12 110973184 110973251 -33309238 + (TG)n Simple_repeat Simple_repeat 1 67 0 1874 181 5 29 chr12 110974042 110974417 -33308072 + MER47A DNA MER2_type 1 366 0 258 321 21 11 chr12 110974475 110974665 -33307824 + L1MDb LINE L1 1136 1327 -5082 3262 84 34 0 chr12 110974694 110974736 -33307753 - MLT2A2 LTR ERVL 0 453 414 639 112 0 0 chr12 110974736 110974852 -33307637 + (TA)n Simple_repeat Simple_repeat 1 116 0 3262 84 34 0 chr12 110974852 110975247 -33307242 - MLT2A2 LTR ERVL -39 414 1 42747 78 9 6 chr12 110975247 110980801 -33301688 - HERVL-A2 LTR ERVL 0 5654 79 554 317 22 35 chr12 110980837 110981096 -33301393 + L1MDb LINE L1 1424 1685 -4902 326 120 10 210 chr12 110981096 110981196 -33301293 - MADE1 DNA Mariner 0 80 1 554 317 22 35 chr12 110981196 110981529 -33300960 + L1MDb LINE L1 1685 2008 -4579 26 50 0 0 chr12 110982027 110982067 -33300422 + AT_rich Low_complexity Low_complexity 1 40 0 2745 133 0 9 chr12 110982188 110982640 -33299849 - HERVH LTR ERV1 -5073 2640 2193 516 287 75 45 chr12 110982674 110983145 -33299344 + L1M3e LINE L1 70 1880 -5150 351 127 21 211 chr12 110983166 110983308 -33299181 - MLT2A2 LTR ERVL 0 453 339 297 266 50 36 chr12 110983409 110983597 -33298892 - AluS SINE Alu -213 89 3 2041 119 0 19 chr12 110983658 110983968 -33298521 + AluSc SINE Alu 6 309 0 268 241 28 0 chr12 110985326 110985415 -33297074 - L1MD1 LINE L1 -1 6358 6151 919 206 103 0 chr12 110985466 110985680 -33296809 - L1MD2 LINE L1 -97 6262 6027 2093 113 0 3 chr12 110985769 110986053 -33296436 - AluSc SINE Alu -26 283 1 2792 254 45 15 chr12 110986081 110987150 -33295339 - L1M4 LINE L1 -2830 3316 2216 1930 203 0 30 chr12 110987369 110987768 -33294721 + MLT1B LTR MaLR 4 390 0 371 295 13 83 chr12 110987874 110988030 -33294459 - LTR16C LTR ERVL -275 216 72 370 114 29 0 chr12 110988130 110988200 -33294289 + CT-rich Low_complexity Low_complexity 3 74 0 2271 129 6 11 chr12 110988243 110988600 -33293889 + THE1A LTR MaLR 1 355 0 679 288 30 60 chr12 110989851 110990118 -33292371 - MIR SINE MIR -3 259 1 309 331 99 0 chr12 110990650 110990771 -33291718 + MLT1K LTR MaLR 19 151 -437 618 168 14 35 chr12 110990967 110991110 -33291379 - L1PB1 LINE L1 -3 6148 6009 2075 191 27 25 chr12 110991170 110991592 -33290897 + MSTB LTR MaLR 2 362 -2 580 233 39 48 chr12 110992035 110992241 -33290248 + L1M3e LINE L1 -723 4294966776 -6826 474 263 64 67 chr12 110992441 110992711 -33289778 + L1M3e LINE L1 907 1177 -5129 1520 172 91 128 chr12 110992711 110993282 -33289207 - MLT2B3 LTR ERVL 0 554 5 474 263 64 67 chr12 110993282 110993372 -33289117 + L1M3e LINE L1 1177 1266 -5040 * 2277 287 38 21 chr12 110993339 110994215 -33288274 + L1MA10 LINE L1 1017 2022 -4360 1250 197 6 104 chr12 110994215 110994560 -33287929 + AluSp SINE Alu 1 311 -2 2277 287 38 21 chr12 110994560 110994928 -33287561 + L1MA10 LINE L1 2022 2382 -4000 8669 206 50 17 chr12 110994932 110995025 -33287464 + L1MA10 LINE L1 2408 2496 -3886 2156 105 0 3 chr12 110995025 110995311 -33287178 + AluSc SINE Alu 14 298 -11 8669 206 50 17 chr12 110995311 110997577 -33284912 + L1MA10 LINE L1 2496 4845 -1537 5361 139 18 10 chr12 110997582 110998844 -33283645 - L1PA15 LINE L1 -5 6160 4890 4417 255 23 9 chr12 110998846 111000104 -33282385 - L1PA13 LINE L1 -3121 3676 2402 3566 231 6 14 chr12 111000106 111000906 -33281583 - L1PA13 LINE L1 -4759 2028 1235 2911 278 38 18 chr12 111000946 111001731 -33280758 - L1PA13 LINE L1 -5986 801 1 4614 209 15 26 chr12 111001775 111003410 -33279079 + L1MA10 LINE L1 4901 6522 -48 8982 103 14 9 chr12 111003566 111004823 -33277666 - HSMAR1 DNA Mariner 0 1287 25 979 250 99 48 chr12 111007540 111008022 -33274467 + L1ME3 LINE L1 5111 5637 -533 2536 122 6 0 chr12 111008022 111008383 -33274106 - THE1B LTR MaLR -1 363 1 979 250 99 48 chr12 111008383 111008651 -33273838 + L1ME3 LINE L1 5637 5890 -280 307 310 80 32 chr12 111008952 111009139 -33273350 + LTR16A LTR ERVL 237 432 -18 309 173 91 109 chr12 111009157 111009267 -33273222 + L1ME3 LINE L1 5974 6081 -81 225 0 0 0 chr12 111009310 111009335 -33273154 + (CA)n Simple_repeat Simple_repeat 2 26 0 343 203 0 0 chr12 111009400 111009459 -33273030 - AluJ/FRAM SINE Alu -20 282 224 199 254 0 34 chr12 111009702 111009761 -33272728 - MIR SINE MIR -57 151 95 738 280 125 4 chr12 111009823 111010102 -33272387 + MLT1I LTR MaLR 97 409 0 247 283 139 34 chr12 111012692 111013045 -33269444 - HAL1 LINE L1 0 2507 2118 380 281 150 51 chr12 111013153 111013427 -33269062 - HAL1 LINE L1 -509 1998 1698 207 146 0 0 chr12 111013427 111013468 -33269021 + (T)n Simple_repeat Simple_repeat 1 41 0 818 157 43 0 chr12 111013635 111013775 -33268714 + FRAM SINE Alu 1 145 -31 291 267 217 27 chr12 111013779 111014000 -33268489 - HAL1 LINE L1 -601 1906 1644 571 203 85 7 chr12 111014055 111014208 -33268281 - MLT1B LTR MaLR -217 173 9 975 245 105 35 chr12 111014218 111014618 -33267871 + MLT1F1 LTR MaLR 140 567 0 528 245 128 0 chr12 111014627 111014884 -33267605 - L1M4 LINE L1 -897 5249 4960 936 253 72 51 chr12 111014998 111015512 -33266977 - L1MC5 LINE L1 -304 7657 7133 212 139 0 23 chr12 111015728 111015771 -33266718 + (TA)n Simple_repeat Simple_repeat 1 42 0 609 226 172 5 chr12 111015956 111016142 -33266347 - MIR SINE MIR -24 238 22 243 296 0 34 chr12 111016811 111016899 -33265590 - MIR SINE MIR 0 262 178 305 284 0 27 chr12 111017989 111018172 -33264317 + (TAA)n Simple_repeat Simple_repeat 3 180 0 2192 57 0 28 chr12 111019156 111019439 -33263050 - AluY SINE Alu -8 303 29 224 234 36 90 chr12 111019472 111019583 -33262906 - MIR SINE MIR -75 187 83 2099 137 0 0 chr12 111019625 111019932 -33262557 - AluSx SINE Alu -5 307 1 1801 150 10 46 chr12 111020031 111020337 -33262152 + AluJo SINE Alu 5 299 -13 2114 122 10 0 chr12 111020789 111021085 -33261404 + AluSp SINE Alu 1 299 -14 23 0 0 0 chr12 111021612 111021635 -33260854 + AT_rich Low_complexity Low_complexity 1 23 0 1614 78 14 0 chr12 111021714 111021931 -33260558 + L1PA7 LINE L1 313 532 -5929 460 48 0 0 chr12 111021930 111021992 -33260497 - L1P LINE L1 -3931 2215 2154 * 6663 65 17 0 chr12 111021992 111023192 -33259297 + L1PA7 LINE L1 5249 6463 -6 186 325 0 0 chr12 111024168 111024208 -33258281 - L2 LINE L2 -18 3254 3215 260 311 162 36 chr12 111024444 111024611 -33257878 + MIR3 SINE MIR 18 205 -3 3417 64 0 9 chr12 111024906 111025358 -33257131 - LTR7 LTR ERV1 -2 448 1 182 356 42 0 chr12 111025680 111025798 -33256691 + L2 LINE L2 1571 1693 -1621 2404 74 45 13 chr12 111025914 111026292 -33256197 - HERVH LTR ERV1 0 7713 7324 1305 139 19 0 chr12 111026292 111026508 -33255981 - HERVH LTR ERV1 -1894 5819 5600 4011 143 9 1 chr12 111026509 111027166 -33255323 - HERVH LTR ERV1 -2564 5149 4488 3198 108 6 0 chr12 111027168 111027659 -33254830 - HERVH LTR ERV1 -3720 3993 3500 793 152 21 0 chr12 111027657 111027802 -33254687 - HERVH LTR ERV1 -4426 3287 3140 * 18636 93 9 45 chr12 111027796 111030894 -33251595 - HERVH LTR ERV1 -4726 2987 1 3558 47 2 7 chr12 111030896 111031346 -33251143 - LTR7 LTR ERV1 -2 448 1 215 125 42 21 chr12 111031777 111031825 -33250664 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 252 172 17 17 chr12 111032075 111032133 -33250356 - MLT1L LTR MaLR -62 553 496 26 0 0 0 chr12 111032265 111032291 -33250198 + AT_rich Low_complexity Low_complexity 1 26 0 366 307 11 85 chr12 111032495 111032671 -33249818 - L1ME3A LINE L1 -232 5938 5776 970 240 18 9 chr12 111032888 111033117 -33249372 - MLT1E LTR MaLR -27 566 336 730 263 12 62 chr12 111033128 111033371 -33249118 - MLT1E LTR MaLR -362 231 1 408 264 109 15 chr12 111033522 111033916 -33248573 - L1M4 LINE L1 -2925 3221 2791 5796 179 14 14 chr12 111033925 111035217 -33247272 - L1MC1 LINE L1 -1 6332 5046 2333 76 0 10 chr12 111035217 111035519 -33246970 + AluY SINE Alu 1 299 -12 5796 179 14 14 chr12 111035519 111035656 -33246833 - L1MC1 LINE L1 -1287 5046 4910 735 146 124 17 chr12 111035688 111035866 -33246623 - L1MA4 LINE L1 -4 6296 6100 * 3767 227 48 29 chr12 111035858 111036985 -33245504 - L1MC1 LINE L1 -1236 4910 3763 21 36 0 0 chr12 111037814 111037842 -33244647 + AT_rich Low_complexity Low_complexity 1 28 0 347 259 0 0 chr12 111038222 111038303 -33244186 - L1MC1 LINE L1 -2303 3843 3763 449 304 14 0 chr12 111038409 111038547 -33243942 + MIR SINE MIR 105 244 -18 24 67 0 0 chr12 111038871 111038916 -33243573 + AT_rich Low_complexity Low_complexity 1 45 0 401 267 126 7 chr12 111040136 111040271 -33242218 + MIR SINE MIR 1 151 -111 1186 276 138 5 chr12 111040331 111040780 -33241709 - MLT1H LTR MaLR 0 549 41 646 251 37 27 chr12 111040953 111041140 -33241349 + MER58A DNA MER1_type 23 211 -13 406 214 313 15 chr12 111041169 111041300 -33241189 + MER5A DNA MER1_type 20 189 0 395 240 56 8 chr12 111041908 111042033 -33240456 + MIR SINE MIR 132 262 0 195 204 0 0 chr12 111042036 111042085 -33240404 + (CAT)n Simple_repeat Simple_repeat 2 50 0 308 280 20 30 chr12 111042905 111043005 -33239484 - MIR SINE MIR -1 261 163 319 277 185 23 chr12 111043125 111043255 -33239234 - MIR SINE MIR -84 178 28 436 350 36 0 chr12 111043573 111043713 -33238776 + L2 LINE L2 3127 3271 -1 539 349 11 5 chr12 111044280 111044469 -33238020 + MIR3 SINE MIR 6 195 -13 226 327 40 30 chr12 111044470 111044571 -33237918 - L2 LINE L2 -1 3271 3170 1722 180 0 17 chr12 111045818 111046113 -33236376 - AluJo SINE Alu -22 290 1 29 70 0 0 chr12 111046250 111046307 -33236182 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr12 111046365 111046393 -33236096 + AT_rich Low_complexity Low_complexity 1 28 0 806 231 6 6 chr12 111046666 111046839 -33235650 + MER5B DNA MER1_type 1 173 -5 267 260 13 13 chr12 111048045 111048122 -33234367 + MIR SINE MIR 74 150 -112 407 346 33 33 chr12 111048152 111048392 -33234097 + MIR SINE MIR 23 262 0 203 68 23 91 chr12 111049768 111049812 -33232677 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 649 290 19 27 chr12 111050629 111050891 -33231598 - MIR SINE MIR 0 262 3 444 277 158 12 chr12 111051467 111051645 -33230844 + MIR SINE MIR 33 234 -28 248 244 81 12 chr12 111052017 111052103 -33230386 - MIR SINE MIR -55 207 116 450 0 0 0 chr12 111052842 111052892 -33229597 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 483 290 99 40 chr12 111052971 111053295 -33229194 - MLT1K LTR MaLR -65 523 181 276 77 0 0 chr12 111053657 111053696 -33228793 + (TG)n Simple_repeat Simple_repeat 2 40 0 288 304 36 27 chr12 111053816 111053928 -33228561 - L2 LINE L2 0 3313 3201 797 303 63 9 chr12 111053952 111054269 -33228220 + MLT2E LTR ERVL 291 624 -4 195 42 0 0 chr12 111054735 111054759 -33227730 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1099 63 0 0 chr12 111054759 111054901 -33227588 - L1PA8 LINE L1 -24 6148 6007 4640 76 0 8 chr12 111054907 111056040 -33226449 - L1PA8 LINE L1 -349 5823 4702 513 208 333 5 chr12 111056429 111056636 -33225853 - ORSL DNA AcHobo 0 275 1 343 302 0 0 chr12 111056706 111056792 -33225697 - L2 LINE L2 0 3313 3228 500 332 139 21 chr12 111057561 111058129 -33224360 - L2 LINE L2 0 3272 2550 2028 153 14 14 chr12 111058739 111059085 -33223404 - MER7A DNA MER2_type -1 345 2 328 310 46 46 chr12 111059275 111059449 -33223040 - MLT1K LTR MaLR -3 585 412 546 56 56 0 chr12 111059449 111059538 -33222951 + CT-rich Low_complexity Low_complexity 4 97 0 785 243 0 0 chr12 111059581 111059733 -33222756 + FRAM SINE Alu 1 152 -14 2217 90 21 0 chr12 111059745 111060035 -33222454 + AluY SINE Alu 1 296 -15 238 227 0 0 chr12 111060356 111060400 -33222089 + L2 LINE L2 3006 3049 -223 355 302 44 64 chr12 111060457 111060690 -33221799 + MIR SINE MIR 15 247 -15 2068 135 0 3 chr12 111060769 111061065 -33221424 - AluSx SINE Alu -17 295 1 717 297 59 13 chr12 111061109 111061345 -33221144 + MIR SINE MIR 14 260 -2 182 273 23 80 chr12 111061354 111061442 -33221047 + L2 LINE L2 3231 3313 0 28 0 0 0 chr12 111062734 111062762 -33219727 + AT_rich Low_complexity Low_complexity 1 28 0 488 273 102 0 chr12 111062762 111062890 -33219599 - MIR SINE MIR 0 262 122 10189 34 1 2 chr12 111063508 111064738 -33217751 - L1PA5 LINE L1 -1506 4640 3412 7367 35 7 2 chr12 111064739 111066249 -33216240 + L1PA5 LINE L1 4639 6150 -4 316 296 63 21 chr12 111066478 111066620 -33215869 - MIR SINE MIR -24 238 91 1957 87 7 34 chr12 111066980 111067278 -33215211 + L1PA13 LINE L1 5791 6080 -83 2164 128 0 0 chr12 111067928 111068224 -33214265 + AluSq SINE Alu 1 296 -17 795 292 142 8 chr12 111068383 111068897 -33213592 - L1M4 LINE L1 -1306 4840 4258 30 77 0 0 chr12 111068924 111068989 -33213500 + AT_rich Low_complexity Low_complexity 1 65 0 448 339 75 28 chr12 111069264 111069834 -33212655 - HAL1b LINE L1 -684 664 68 2381 92 51 23 chr12 111070133 111070525 -33211964 - L1PA13 LINE L1 0 6163 5761 771 102 24 16 chr12 111070525 111070652 -33211837 + L1P4 LINE L1 5428 5555 -613 252 86 0 0 chr12 111071301 111071336 -33211153 + (TA)n Simple_repeat Simple_repeat 2 36 0 1690 161 16 35 chr12 111072821 111073131 -33209358 + AluJb SINE Alu 1 304 -8 34 72 0 0 chr12 111073257 111073326 -33209163 + AT_rich Low_complexity Low_complexity 1 69 0 211 175 0 0 chr12 111073335 111073375 -33209114 - L2 LINE L2 -6 3307 3268 321 309 0 21 chr12 111073804 111073901 -33208588 + L1ME4a LINE L1 5590 5684 -437 292 305 139 3 chr12 111073933 111074235 -33208254 + L1ME4a LINE L1 5771 6113 -8 5259 58 3 0 chr12 111074279 111074938 -33207551 + L1PA6 LINE L1 5487 6147 -7 431 310 138 73 chr12 111075235 111075726 -33206763 + L2 LINE L2 36 558 -2756 215 276 17 0 chr12 111076108 111076166 -33206323 + L2 LINE L2 3243 3301 -12 1269 210 38 17 chr12 111076375 111076665 -33205824 - MLT1A1 LTR MaLR -69 296 1 418 303 0 0 chr12 111076685 111076784 -33205705 - L2 LINE L2 -5 3308 3210 33 43 0 0 chr12 111076872 111076919 -33205570 + AT_rich Low_complexity Low_complexity 1 47 0 360 0 0 0 chr12 111077188 111077228 -33205261 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 258 278 60 45 chr12 111078446 111078579 -33203910 + L2 LINE L2 2918 3052 -220 247 252 168 9 chr12 111078589 111078696 -33203793 - L2 LINE L2 -8 3305 3182 258 240 0 0 chr12 111078706 111078756 -33203733 - L2 LINE L2 -8 3305 3256 245 250 28 0 chr12 111078816 111078888 -33203601 + (TA)n Simple_repeat Simple_repeat 2 75 0 24 53 0 0 chr12 111078930 111078968 -33203521 + AT_rich Low_complexity Low_complexity 1 38 0 191 59 0 59 chr12 111079528 111079562 -33202927 + (TTTTC)n Simple_repeat Simple_repeat 5 36 0 298 388 54 0 chr12 111079628 111079757 -33202732 + L2 LINE L2 3126 3261 -11 21 36 0 0 chr12 111079870 111079898 -33202591 + AT_rich Low_complexity Low_complexity 1 28 0 322 290 94 56 chr12 111081279 111081565 -33200924 - L2 LINE L2 -9 3263 2967 284 288 0 0 chr12 111081713 111081786 -33200703 - L2 LINE L2 -527 2787 2715 417 109 0 0 chr12 111081999 111082063 -33200426 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 243 0 0 0 chr12 111082174 111082201 -33200288 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 207 0 0 0 chr12 111082224 111082247 -33200242 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1700 26 0 0 chr12 111082247 111082442 -33200047 - L1PA3 LINE L1 -6 6149 5955 522 282 55 12 chr12 111083081 111083291 -33199198 + MIR SINE MIR 5 221 -41 22 0 0 0 chr12 111083495 111083517 -33198972 + AT_rich Low_complexity Low_complexity 1 22 0 248 326 98 11 chr12 111083601 111083693 -33198796 + MIR3 SINE MIR 57 156 -52 253 341 30 43 chr12 111084383 111084547 -33197942 - MIR3 SINE MIR -31 177 16 250 320 97 0 chr12 111085169 111085272 -33197217 + MIR3 SINE MIR 57 169 -39 299 130 19 0 chr12 111085387 111085441 -33197048 + GA-rich Low_complexity Low_complexity 1 55 0 881 283 9 9 chr12 111085714 111085947 -33196542 - MIR SINE MIR -15 247 15 215 221 59 29 chr12 111086013 111086081 -33196408 + MIR SINE MIR 130 199 -63 227 182 0 0 chr12 111086287 111086331 -33196158 + (TG)n Simple_repeat Simple_repeat 1 44 0 338 308 81 75 chr12 111086961 111087470 -33195019 + L1M4 LINE L1 3340 3856 -2290 1498 177 69 7 chr12 111087470 111087747 -33194742 + AluJo SINE Alu 1 294 -18 338 308 81 75 chr12 111087747 111088007 -33194482 + L1M4 LINE L1 3856 4113 -2033 493 231 26 26 chr12 111088825 111088942 -33193547 + L1MC3 LINE L1 7098 7214 -571 928 204 230 3 chr12 111088942 111089251 -33193238 - Charlie1b DNA MER1_type -144 379 1 2278 108 3 0 chr12 111089294 111089600 -33192889 - AluY SINE Alu -1 310 4 1164 164 24 0 chr12 111090556 111090769 -33191720 - L1MA10 LINE L1 -178 6011 5794 1317 172 14 44 chr12 111090771 111091067 -33191422 + L1MA10 LINE L1 6017 6303 -31 1192 162 18 9 chr12 111091174 111091396 -33191093 - L1MB7 LINE L1 -310 5874 5651 1768 206 32 61 chr12 111091468 111091929 -33190560 + MER41B LTR ERV1 148 595 -40 492 281 105 0 chr12 111091971 111092124 -33190365 - MIR SINE MIR -67 195 27 1211 171 9 0 chr12 111092292 111092503 -33189986 - L1PB4 LINE L1 -9 6147 5935 345 321 25 72 chr12 111093440 111093885 -33188604 - L1ME4a LINE L1 -71 6050 5627 990 73 23 17 chr12 111093995 111094172 -33188317 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 255 310 86 17 chr12 111094347 111094463 -33188026 - L2 LINE L2 -1 3271 3148 306 257 81 0 chr12 111094480 111094554 -33187935 - L2 LINE L2 0 3272 3193 465 259 143 57 chr12 111094629 111094930 -33187559 + MER46C DNA MER2_type 8 334 -4 533 267 73 0 chr12 111095084 111095249 -33187240 - MER69A DNA AcHobo 0 177 1 456 159 11 0 chr12 111096116 111096204 -33186285 - L1MB8 LINE L1 -2 6176 6088 267 79 0 0 chr12 111097802 111097840 -33184649 + (TC)n Simple_repeat Simple_repeat 2 39 0 1130 35 7 0 chr12 111097918 111098062 -33184427 - L1PA4 LINE L1 0 6155 6011 195 291 29 68 chr12 111098179 111098282 -33184207 - MIR SINE MIR -75 187 89 448 223 50 50 chr12 111098690 111098811 -33183678 + L2 LINE L2 3193 3313 0 2124 79 10 31 chr12 111098813 111099169 -33183320 + AluY SINE Alu 1 350 0 254 345 108 31 chr12 111099192 111099415 -33183074 + MIR SINE MIR 7 246 -16 309 89 0 0 chr12 111099425 111099470 -33183019 + (TTA)n Simple_repeat Simple_repeat 2 46 0 453 0 0 0 chr12 111099750 111099803 -33182686 + AluY SINE Alu 243 295 -16 4600 30 9 2 chr12 111099803 111100360 -33182129 + L1PA4 LINE L1 5392 5952 -203 2028 52 4 8 chr12 111100474 111100723 -33181766 - AluY SINE Alu -63 248 1 241 305 34 51 chr12 111100775 111101067 -33181422 + L1M4 LINE L1 2273 2559 -3587 2174 121 0 3 chr12 111101096 111101402 -33181087 - AluSc SINE Alu -4 305 1 2453 109 32 5 chr12 111101561 111101938 -33180551 - L1PA10 LINE L1 -3 6165 5779 793 130 0 0 chr12 111101940 111102063 -33180426 - L1 LINE L1 -1315 4831 4709 584 102 0 41 chr12 111102062 111102160 -33180329 + L1P LINE L1 3640 3733 -2413 * 390 59 0 0 chr12 111102164 111102215 -33180274 - L1PA8 LINE L1 -12 6160 6110 2847 133 13 2 chr12 111102215 111102690 -33179799 + L1P LINE L1 4852 5331 -815 293 111 0 0 chr12 111102687 111102732 -33179757 - L1P LINE L1 -1863 4283 4239 * 434 100 38 25 chr12 111102733 111102813 -33179676 - MER50 LTR ERV1 -83 651 571 1557 125 8 0 chr12 111102813 111103069 -33179420 + L1P LINE L1 4278 4535 -1611 268 244 12 35 chr12 111154703 111154789 -33127700 + L1MC/D LINE L1 5742 5825 -1983 3964 177 89 1 chr12 111154869 111155654 -33126835 + L1PBa LINE L1 3 856 -6007 382 240 0 13 chr12 111155754 111155829 -33126660 + MLT1H LTR MaLR 86 159 -390 236 274 119 0 chr12 111156078 111156162 -33126327 + MLT1H LTR MaLR 454 547 -2 213 0 81 0 chr12 111156690 111156727 -33125762 + (TTA)n Simple_repeat Simple_repeat 3 42 0 3181 26 3 3 chr12 111156727 111157106 -33125383 - L1PA3 LINE L1 -18 6137 5778 4549 8 0 0 chr12 111157106 111157612 -33124877 + L1PA3 LINE L1 5267 5772 -383 246 344 111 12 chr12 111157686 111157930 -33124559 - L2 LINE L2 -993 2321 2054 * 362 289 156 0 chr12 111157902 111158037 -33124452 + MIR SINE MIR 9 164 -98 675 44 66 0 chr12 111158141 111158278 -33124211 + (TA)n Simple_repeat Simple_repeat 2 147 0 1534 182 10 37 chr12 111158383 111158680 -33123809 + AluJo SINE Alu 1 289 -23 7474 88 15 0 chr12 111161162 111161754 -33120735 - L1P3 LINE L1 -5451 1010 395 216 0 0 0 chr12 111161754 111161778 -33120711 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7474 88 15 0 chr12 111161778 111162179 -33120310 - L1P3 LINE L1 -6066 395 2 22 35 0 0 chr12 111162609 111162638 -33119851 + AT_rich Low_complexity Low_complexity 1 29 0 209 184 0 0 chr12 111165891 111165929 -33116560 + CT-rich Low_complexity Low_complexity 2 39 0 371 314 58 10 chr12 111167006 111167213 -33115276 - L1MEc LINE L1 -4702 1694 1478 320 182 117 13 chr12 111167278 111167355 -33115134 - MIR SINE MIR 0 262 178 1616 194 43 17 chr12 111167355 111167606 -33114883 - L1MB4 LINE L1 0 6180 5912 2245 191 78 32 chr12 111167606 111168103 -33114386 - MLT2B1 LTR ERVL 0 520 1 1616 194 43 17 chr12 111168103 111168268 -33114221 - L1MB4 LINE L1 -268 5912 5753 2062 44 4 4 chr12 111168370 111168642 -33113847 + L1P3 LINE L1 1033 1304 -5157 1624 98 0 0 chr12 111168647 111168882 -33113607 - L1P3 LINE L1 -5581 880 646 * 28279 99 7 7 chr12 111168856 111173795 -33108694 + L1PA7 LINE L1 931 5866 -288 3666 222 23 28 chr12 111173904 111175260 -33107229 - L1MB4 LINE L1 -611 5569 4265 380 263 13 95 chr12 111175448 111175654 -33106835 + LTR67 LTR ERVL 329 516 -41 2051 141 82 35 chr12 111175654 111176058 -33106431 - MSTB LTR MaLR 0 426 4 380 263 13 95 chr12 111176058 111176083 -33106406 + LTR67 LTR ERVL 516 541 -16 526 201 201 21 chr12 111176113 111176302 -33106187 + L2 LINE L2 3090 3312 -1 487 292 14 14 chr12 111177552 111177696 -33104793 - L2 LINE L2 -1 3312 3169 523 263 21 30 chr12 111177716 111177882 -33104607 + Charlie7 DNA MER1_type 466 631 -1981 2375 73 0 0 chr12 111177882 111178183 -33104306 - AluY SINE Alu -10 301 1 523 263 21 30 chr12 111178183 111178252 -33104237 + Charlie7 DNA MER1_type 631 699 -1913 203 220 20 53 chr12 111178358 111178508 -33103981 + (TATAA)n Simple_repeat Simple_repeat 5 149 0 * 302 134 62 36 chr12 111178409 111178521 -33103968 + (TA)n Simple_repeat Simple_repeat 1 115 0 187 108 31 46 chr12 111178541 111178606 -33103883 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 1755 142 81 39 chr12 111178662 111179021 -33103468 + THE1C LTR MaLR 1 374 -1 184 365 36 18 chr12 111179458 111179625 -33102864 - L2 LINE L2 -1677 1637 1468 385 331 38 13 chr12 111179684 111179841 -33102648 - MIR SINE MIR 0 262 102 225 132 0 0 chr12 111179887 111179925 -33102564 + (TG)n Simple_repeat Simple_repeat 1 38 0 2331 97 0 3 chr12 111180187 111180486 -33102003 - AluSg SINE Alu -12 298 1 24 53 0 0 chr12 111180488 111180526 -33101963 + AT_rich Low_complexity Low_complexity 1 38 0 2271 105 13 0 chr12 111180607 111180913 -33101576 - AluSg SINE Alu 0 310 1 912 292 62 18 chr12 111180939 111181499 -33100990 - L1MEc LINE L1 -3532 2683 2149 222 37 0 0 chr12 111181499 111181526 -33100963 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2032 128 4 4 chr12 111181530 111181811 -33100678 - AluSx SINE Alu -31 281 1 912 292 62 18 chr12 111181811 111181886 -33100603 - L1MEc LINE L1 -4068 2147 2066 11383 134 19 21 chr12 111181944 111183851 -33098638 + Tigger3(Golem) DNA MER2_type 2 1903 -1126 252 217 0 0 chr12 111183850 111183896 -33098593 + Tigger3(Golem) DNA MER2_type 2982 3027 -2 * 1818 164 10 24 chr12 111183934 111184232 -33098257 + AluJo SINE Alu 1 294 -18 2104 93 57 23 chr12 111184489 111184790 -33097699 - AluY SINE Alu 0 311 1 551 101 0 0 chr12 111186744 111186823 -33095666 - MADE1 DNA Mariner -1 79 1 183 270 40 54 chr12 111186926 111187000 -33095489 + MER5B DNA MER1_type 43 115 -63 320 265 29 29 chr12 111188009 111188111 -33094378 - MER5A DNA MER1_type -4 185 84 376 275 222 38 chr12 111188160 111188721 -33093768 - L2 LINE L2 -218 3095 2550 393 272 49 43 chr12 111188873 111189035 -33093454 - Charlie8 DNA MER1_type -2254 163 1 541 272 51 19 chr12 111189048 111189206 -33093283 - MER91B DNA MER1_type -11 179 17 535 242 25 0 chr12 111189273 111189393 -33093096 - MER63A DNA MER1_type 0 210 88 193 393 8 17 chr12 111189668 111189785 -33092704 + L2 LINE L2 695 810 -2504 377 286 27 0 chr12 111192107 111192219 -33090270 + MLT1L LTR MaLR 161 275 -340 386 314 113 71 chr12 111192374 111192922 -33089567 + HAL1b LINE L1 58 628 -720 262 100 0 0 chr12 111193147 111193187 -33089302 - L1MDa LINE L1 -4938 1468 1429 3026 166 13 9 chr12 111193193 111193729 -33088760 + MER44D DNA MER2_type 9 601 -4 414 199 66 22 chr12 111193749 111193885 -33088604 - L1MDa LINE L1 -4987 1422 1281 242 305 26 78 chr12 111194062 111194164 -33088325 + L2 LINE L2 3113 3206 -107 2118 166 31 0 chr12 111194164 111194555 -33087934 + MER57A LTR ERV1 1 403 0 242 305 26 78 chr12 111194555 111194606 -33087883 + L2 LINE L2 3206 3258 -55 193 191 0 32 chr12 111194969 111195032 -33087457 + CT-rich Low_complexity Low_complexity 6 66 0 423 259 34 14 chr12 111195806 111195953 -33086536 + MIR SINE MIR 110 259 -3 330 274 24 24 chr12 111197603 111197687 -33084802 + L2 LINE L2 3218 3301 -12 411 215 0 0 chr12 111197687 111197780 -33084709 + L1MA6 LINE L1 6019 6111 -189 770 182 0 8 chr12 111197780 111197912 -33084577 - FLAM_C SINE Alu -11 132 2 1103 124 25 0 chr12 111197912 111198114 -33084375 + L1MA6 LINE L1 6094 6300 0 21 0 0 0 chr12 111198114 111198135 -33084354 + AT_rich Low_complexity Low_complexity 1 21 0 314 250 0 0 chr12 111198226 111198290 -33084199 + L2 LINE L2 3201 3264 -8 310 224 56 84 chr12 111198605 111198712 -33083777 - MIR3 SINE MIR -44 164 61 497 322 46 25 chr12 111198812 111199158 -33083331 + L2 LINE L2 2646 3084 -229 360 248 48 0 chr12 111199251 111199376 -33083113 - L1ME1 LINE L1 -5 6161 6031 902 235 103 7 chr12 111199397 111199678 -33082811 + L1ME1 LINE L1 5721 6028 -138 460 333 20 10 chr12 111199686 111199881 -33082608 + L2 LINE L2 3117 3313 0 13357 199 18 2 chr12 111200181 111204876 -33077613 + L1PB1 LINE L1 2827 7589 0 262 238 24 0 chr12 111204904 111204988 -33077501 + L1MC/D LINE L1 5812 5897 -1911 222 156 0 0 chr12 111205696 111205741 -33076748 + CT-rich Low_complexity Low_complexity 2 46 0 270 0 0 0 chr12 111205741 111205771 -33076718 + (CA)n Simple_repeat Simple_repeat 1 30 0 465 326 70 42 chr12 111205847 111206203 -33076286 + MLT1K LTR MaLR 178 543 -45 229 310 14 0 chr12 111206650 111206721 -33075768 - L2 LINE L2 0 3313 3242 213 39 0 0 chr12 111206963 111206989 -33075500 + (T)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr12 111207003 111207026 -33075463 + AT_rich Low_complexity Low_complexity 1 23 0 40352 37 21 2 chr12 111207026 111213058 -33069431 - L1PA2 LINE L1 -1 6154 2 353 324 97 0 chr12 111213088 111213264 -33069225 + MLT1K LTR MaLR 100 292 -296 217 274 74 74 chr12 111213284 111213419 -33069070 + MIR SINE MIR 29 163 -99 291 192 182 10 chr12 111213831 111213930 -33068559 - L1MC5 LINE L1 -534 7427 7312 234 260 0 55 chr12 111213934 111214007 -33068482 - L1MC4 LINE L1 -571 7471 7403 288 214 92 20 chr12 111214137 111214235 -33068254 - L1MC5 LINE L1 -808 7153 7049 2070 145 40 13 chr12 111214475 111214855 -33067634 - MLT1B LTR MaLR 0 390 1 3509 153 73 5 chr12 111214981 111215640 -33066849 + MER50 LTR ERV1 1 704 -30 1641 184 7 14 chr12 111215883 111216165 -33066324 - AluJb SINE Alu -32 280 1 1738 121 36 0 chr12 111216636 111216885 -33065604 + AluSg SINE Alu 1 258 -52 262 381 80 14 chr12 111218137 111218473 -33064016 + L2 LINE L2 2722 3085 -187 185 379 11 0 chr12 111218526 111218613 -33063876 + L3 LINE CR1 884 971 -606 339 321 14 7 chr12 111219571 111219711 -33062778 + (TCCA)n Simple_repeat Simple_repeat 3 143 0 243 286 43 57 chr12 111220032 111220172 -33062317 - L2 LINE L2 -549 2765 2628 1976 266 1 19 chr12 111221833 111222501 -33059988 - L1 LINE L1 -3317 2829 2174 * 2280 216 22 4 chr12 111222499 111223045 -33059444 + L1PB1 LINE L1 4080 4635 -1511 * 5565 95 27 28 chr12 111223032 111223964 -33058525 + L1PB1 LINE L1 5211 6146 -5 3108 175 35 13 chr12 111223993 111224709 -33057780 + L1P LINE L1 4643 5374 -772 304 294 140 7 chr12 111224837 111224934 -33057555 - MIR SINE MIR -102 160 39 2230 96 17 0 chr12 111224934 111225235 -33057254 + AluSq SINE Alu 1 306 -7 304 294 140 7 chr12 111225235 111225273 -33057216 - MIR SINE MIR -223 39 7 358 223 36 18 chr12 111225650 111225762 -33056727 - MIR SINE MIR -58 204 91 424 113 141 0 chr12 111225765 111225836 -33056653 + MLT1B LTR MaLR 4 84 -306 826 246 5 5 chr12 111225892 111226091 -33056398 + MLT1B LTR MaLR 192 390 0 566 273 106 15 chr12 111226257 111226521 -33055968 + MLT1L LTR MaLR 168 455 -160 804 119 5 1 chr12 111226526 111226661 -33055828 + MSTB1 LTR MaLR 17 154 -274 228 313 30 0 chr12 111226638 111226769 -33055720 + MLT1L LTR MaLR 454 588 -27 * 228 174 65 0 chr12 111227164 111227210 -33055279 - L3 LINE CR1 -297 1280 1232 2058 173 43 17 chr12 111227567 111227988 -33054501 + MSTB1 LTR MaLR 1 432 0 558 338 64 10 chr12 111227991 111228195 -33054294 - MIR SINE MIR -28 234 20 246 213 66 49 chr12 111231259 111231350 -33051139 - MIR SINE MIR -68 194 103 228 258 155 48 chr12 111231425 111231677 -33050812 + L1ME4a LINE L1 5784 6062 -59 322 167 0 0 chr12 111232813 111232879 -33049610 - MER116 DNA Mariner 0 80 15 880 250 54 6 chr12 111233024 111233251 -33049238 + MIR SINE MIR 14 249 -13 188 222 0 0 chr12 111233301 111233337 -33049152 - L2 LINE L2 -90 3223 3188 362 287 84 14 chr12 111233710 111233853 -33048636 - L2 LINE L2 0 3313 3161 1554 248 42 20 chr12 111233876 111234328 -33048161 + LTR40a LTR ERVL 7 468 -51 21 36 0 0 chr12 111234555 111234583 -33047906 + AT_rich Low_complexity Low_complexity 1 28 0 874 321 42 76 chr12 111234669 111234970 -33047519 - L2 LINE L2 -472 2842 2532 1455 222 0 10 chr12 111234970 111235267 -33047222 - AluJo SINE Alu -18 294 1 874 321 42 76 chr12 111235267 111235706 -33046783 - L2 LINE L2 -782 2532 2127 721 263 79 59 chr12 111235841 111236273 -33046216 + L2 LINE L2 50 3298 -15 225 0 0 0 chr12 111236275 111236300 -33046189 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 520 348 72 30 chr12 111237132 111237534 -33044955 - L2 LINE L2 -1260 2054 1636 205 29 59 0 chr12 111237988 111238022 -33044467 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 536 294 13 20 chr12 111238079 111238232 -33044257 + MIR SINE MIR 2 153 -109 766 278 26 30 chr12 111238244 111238478 -33044011 - MIR SINE MIR 0 262 30 5141 95 3 7 chr12 111239106 111239875 -33042614 + L1PB1 LINE L1 5385 6150 -1 322 165 25 0 chr12 111240525 111240604 -33041885 + L1MA10 LINE L1 6253 6333 -1 49 60 0 0 chr12 111240678 111240762 -33041727 + AT_rich Low_complexity Low_complexity 1 84 0 2377 121 10 17 chr12 111241558 111241964 -33040525 + L1MA4A LINE L1 5890 6292 -11 2331 91 0 0 chr12 111242081 111242377 -33040112 + AluSg SINE Alu 1 296 -14 1087 241 92 14 chr12 111242519 111242888 -33039601 + MLT1K LTR MaLR 191 588 0 977 287 108 25 chr12 111243079 111243302 -33039187 - L2 LINE L2 0 3313 3110 2501 108 11 19 chr12 111243302 111243680 -33038809 - THE1C LTR MaLR 0 375 1 977 287 108 25 chr12 111243680 111244080 -33038409 - L2 LINE L2 -203 3110 2636 988 166 4 104 chr12 111244249 111244490 -33037999 + MER20 DNA MER1_type 2 218 -1 2044 149 62 6 chr12 111245770 111246125 -33036364 - THE1C LTR MaLR 0 375 1 29 0 0 0 chr12 111247232 111247261 -33035228 + AT_rich Low_complexity Low_complexity 1 29 0 595 309 100 44 chr12 111247538 111247969 -33034520 - LTR67 LTR ERVL 0 557 103 230 306 0 47 chr12 111248195 111248280 -33034209 - MIR SINE MIR -155 107 27 2092 164 8 13 chr12 111248288 111248665 -33033824 + THE1C LTR MaLR 1 375 0 409 312 140 0 chr12 111248800 111248986 -33033503 + MIR SINE MIR 43 254 -8 27 0 0 0 chr12 111249740 111249767 -33032722 + AT_rich Low_complexity Low_complexity 1 27 0 965 211 166 30 chr12 111249767 111249884 -33032605 + AluJo SINE Alu 2 102 -200 288 0 0 0 chr12 111249884 111249916 -33032573 + (CAA)n Simple_repeat Simple_repeat 2 33 0 965 211 166 30 chr12 111249916 111250063 -33032426 + AluJo SINE Alu 102 302 0 236 285 28 83 chr12 111250169 111250313 -33032176 + L2 LINE L2 2945 3080 -192 1172 160 138 90 chr12 111250489 111250610 -33031879 + MER93b LTR ERV1 1 115 -258 3112 87 41 0 chr12 111250610 111251047 -33031442 + L1PA10 LINE L1 5699 6153 -15 1172 160 138 90 chr12 111251047 111251281 -33031208 + MER93b LTR ERV1 115 373 0 2089 135 30 28 chr12 111251402 111251765 -33030724 + THE1B LTR MaLR 1 364 0 301 148 0 50 chr12 111252911 111253012 -33029477 + (TA)n Simple_repeat Simple_repeat 1 96 0 407 310 51 13 chr12 111253111 111253269 -33029220 - MIR SINE MIR -53 209 46 1829 136 0 41 chr12 111254357 111254689 -33027800 - AluJb SINE Alu 0 320 1 286 238 12 48 chr12 111254855 111254939 -33027550 - MIR SINE MIR -35 227 147 2203 148 11 5 chr12 111255065 111255444 -33027045 + L1PA15 LINE L1 5777 6157 -8 23 0 0 0 chr12 111255444 111255467 -33027022 + AT_rich Low_complexity Low_complexity 1 23 0 227 383 47 8 chr12 111256281 111256409 -33026080 + MIR SINE MIR 18 150 -112 360 301 140 0 chr12 111256420 111256556 -33025933 - MIR SINE MIR -106 156 2 397 246 183 35 chr12 111256871 111257013 -33025476 - MER5A DNA MER1_type 0 189 27 484 181 29 19 chr12 111257023 111257128 -33025361 + MER5A DNA MER1_type 7 112 -77 232 179 90 45 chr12 111257312 111257379 -33025110 + L2 LINE L2 3166 3235 -37 696 182 47 7 chr12 111259172 111259320 -33023169 + MER30 DNA MER1_type 55 208 -22 2697 181 123 6 chr12 111259678 111260346 -33022143 + MER45R DNA AcHobo 836 1581 0 3515 80 4 6 chr12 111260654 111261139 -33021350 + L1PA8 LINE L1 5689 6172 0 609 259 97 73 chr12 111261238 111261948 -33020541 - HAL1 LINE L1 -1043 1464 738 365 289 82 94 chr12 111262202 111262531 -33019958 - HAL1 LINE L1 -2095 412 88 616 278 119 22 chr12 111263216 111263443 -33019046 + MIR SINE MIR 2 250 -12 821 198 12 17 chr12 111265288 111265460 -33017029 - MIR SINE MIR 0 262 92 701 256 39 43 chr12 111266114 111266188 -33016301 + MIR SINE MIR 21 94 -168 2385 78 3 0 chr12 111266188 111266482 -33016007 + AluY SINE Alu 1 295 -16 701 256 39 43 chr12 111266482 111266637 -33015852 + MIR SINE MIR 94 249 -13 195 355 85 14 chr12 111267127 111267268 -33015221 - MIR SINE MIR -36 226 76 1903 116 84 7 chr12 111267671 111267955 -33014534 - AluSx SINE Alu -6 306 1 461 248 62 12 chr12 111267955 111268116 -33014373 - L1MC/D LINE L1 -1985 5823 5655 216 292 97 18 chr12 111268292 111268405 -33014084 + MIR SINE MIR 101 222 -40 211 246 105 0 chr12 111268910 111268967 -33013522 - L2 LINE L2 -3 3269 3207 185 320 20 0 chr12 111269285 111269335 -33013154 + L2 LINE L2 3218 3268 -4 315 277 31 82 chr12 111269399 111269558 -33012931 + MIR3 SINE MIR 20 170 -38 760 254 43 14 chr12 111270575 111270784 -33011705 - MIR SINE MIR -40 222 8 606 256 97 13 chr12 111271699 111271926 -33010563 + L2 LINE L2 2835 3080 -233 602 310 65 34 chr12 111272289 111272481 -33010008 - L1ME2 LINE L1 -282 5882 5697 1668 143 76 52 chr12 111272481 111272810 -33009679 + MER1B DNA MER1_type 1 337 0 602 310 65 34 chr12 111272810 111272890 -33009599 - L1ME2 LINE L1 -467 5697 5621 1852 158 3 6 chr12 111272890 111273226 -33009263 + L1MA4A LINE L1 5966 6300 -3 602 310 65 34 chr12 111273226 111274071 -33008418 - L1ME2 LINE L1 -543 5621 4696 375 256 45 15 chr12 111274155 111274288 -33008201 - L1ME2 LINE L1 -1611 4535 4399 29 0 0 0 chr12 111274290 111274319 -33008170 + AT_rich Low_complexity Low_complexity 1 29 0 627 133 0 10 chr12 111274506 111274626 -33007863 - AluSg/x SINE Alu 0 309 197 256 247 91 110 chr12 111274678 111274941 -33007548 + L2 LINE L2 3038 3295 -18 183 189 0 0 chr12 111274967 111275020 -33007469 + (CA)n Simple_repeat Simple_repeat 2 54 0 217 158 26 0 chr12 111275261 111275299 -33007190 + GA-rich Low_complexity Low_complexity 2 40 0 206 276 83 72 chr12 111276952 111277133 -33005356 - L2 LINE L2 -19 3294 3112 269 241 19 83 chr12 111277232 111277340 -33005149 + MLT1H LTR MaLR 431 531 -18 2485 56 0 3 chr12 111278250 111278554 -33003935 + AluY SINE Alu 1 303 -8 199 290 187 15 chr12 111278597 111278731 -33003758 - MIR SINE MIR -11 197 21 398 258 58 25 chr12 111279076 111279196 -33003293 + MER91C DNA MER1_type 17 140 0 247 210 0 0 chr12 111279282 111279344 -33003145 - L1MA10 LINE L1 -1 6333 6272 508 233 181 0 chr12 111281318 111281451 -33001038 - MER5A DNA MER1_type 0 189 33 191 372 94 77 chr12 111281765 111281999 -33000490 - L2 LINE L2 -40 3232 2995 358 274 71 19 chr12 111282133 111282296 -33000193 - MIR SINE MIR -62 146 31 2499 141 23 21 chr12 111282476 111282908 -32999581 + Tigger2a DNA MER2_type 1 433 -1 327 338 78 7 chr12 111283165 111283307 -32999182 - MER91A DNA MER1_type -44 152 1 202 333 9 35 chr12 111283377 111283491 -32998998 - L2 LINE L2 -1499 1815 1705 281 380 6 23 chr12 111285201 111285372 -32997117 - L3 LINE CR1 -3 1574 1407 1847 196 19 14 chr12 111286621 111286984 -32995505 + MLT1A1 LTR MaLR 1 365 0 186 167 0 0 chr12 111287002 111287038 -32995451 + (CA)n Simple_repeat Simple_repeat 1 36 0 1702 113 0 0 chr12 111287543 111287765 -32994724 + AluSq SINE Alu 1 222 -91 12293 110 20 13 chr12 111287923 111290512 -32991977 - L1PA10 LINE L1 -90 6078 3484 222 291 18 0 chr12 111290515 111290570 -32991919 + L2 LINE L2 294 349 -2965 394 267 24 49 chr12 111290624 111290827 -32991662 + MLT1F1 LTR MaLR 1 197 -370 930 245 123 72 chr12 111290902 111291331 -32991158 + MLT1H LTR MaLR 1 451 -98 263 121 52 0 chr12 111293561 111293619 -32988870 - L1ME4a LINE L1 0 6121 6061 680 254 77 55 chr12 111293746 111294108 -32988381 - L1ME4a LINE L1 -292 5829 5460 200 289 84 24 chr12 111294274 111294357 -32988132 - MIR SINE MIR -97 111 24 2765 224 18 4 chr12 111294790 111295334 -32987155 + MLT1G LTR MaLR 39 590 0 22 35 0 0 chr12 111295446 111295475 -32987014 + AT_rich Low_complexity Low_complexity 1 29 0 390 239 155 21 chr12 111295778 111295920 -32986569 - MIR SINE MIR -94 168 8 634 273 30 26 chr12 111295921 111296152 -32986337 + MER112 DNA MER1_type 3 234 -26 2667 42 0 0 chr12 111296294 111296600 -32985889 - AluY SINE Alu -5 306 1 489 206 16 56 chr12 111297448 111297574 -32984915 + MIR SINE MIR 129 249 -13 237 292 58 50 chr12 111297578 111297698 -32984791 - MIR SINE MIR -74 188 68 236 259 74 0 chr12 111297767 111297821 -32984668 - L2 LINE L2 -67 3205 3148 381 149 0 0 chr12 111298663 111298730 -32983759 + (TATG)n Simple_repeat Simple_repeat 2 68 0 361 324 9 0 chr12 111300102 111300213 -32982276 - MER117 DNA MER1_type -83 114 3 222 338 40 46 chr12 111300391 111300542 -32981947 + MIR SINE MIR 21 170 -92 329 321 114 62 chr12 111300576 111300866 -32981623 - MLT1K LTR MaLR -218 370 66 198 200 267 13 chr12 111300923 111300998 -32981491 + MIR SINE MIR 161 254 -8 482 310 200 17 chr12 111301315 111301670 -32980819 - L2 LINE L2 -32 3281 2862 1943 187 60 36 chr12 111301688 111302154 -32980335 + MLT1D LTR MaLR 29 505 0 560 119 0 59 chr12 111302829 111302930 -32979559 - FLAM_C SINE Alu -6 137 43 251 240 0 0 chr12 111303701 111303751 -32978738 + MER69 DNA AcHobo 2472 2521 -5 1420 306 82 27 chr12 111303928 111305407 -32977082 - L1MEd LINE L1 -2275 3854 2294 230 276 72 52 chr12 111305773 111306023 -32976466 - L1MEd LINE L1 -3989 2321 2067 700 279 76 56 chr12 111306387 111306662 -32975827 - L1MEd LINE L1 -825 1665 1397 209 56 0 56 chr12 111306662 111306698 -32975791 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 700 279 76 56 chr12 111306698 111307386 -32975103 - L1MEd LINE L1 -1093 1397 656 1008 168 40 5 chr12 111307389 111307591 -32974898 + L1MC1 LINE L1 6112 6320 -13 37421 90 12 7 chr12 111307870 111309070 -32973419 - L1PA6 LINE L1 0 6154 4962 2507 72 0 0 chr12 111309070 111309375 -32973114 - AluY SINE Alu -6 305 1 37421 90 12 7 chr12 111309375 111314289 -32968200 - L1PA6 LINE L1 -1192 4962 11 653 335 111 19 chr12 111314632 111315246 -32967243 - L1M4 LINE L1 -1821 4325 3656 2201 129 0 3 chr12 111316154 111316464 -32966025 - AluSx SINE Alu -3 309 1 968 312 99 47 chr12 111316976 111317661 -32964828 + L2 LINE L2 2303 3018 -254 253 287 0 30 chr12 111317892 111317993 -32964496 + A-rich Low_complexity Low_complexity 3 100 0 185 108 27 0 chr12 111319616 111319653 -32962836 + C-rich Low_complexity Low_complexity 4 41 0 326 273 74 16 chr12 111321573 111321694 -32960795 - MIR3 SINE MIR -4 204 77 186 367 0 17 chr12 111321882 111321942 -32960547 - L2 LINE L2 -80 3192 3134 2190 105 0 19 chr12 111321956 111322269 -32960220 + AluSc SINE Alu 1 307 -2 341 224 15 0 chr12 111322505 111322572 -32959917 + L2 LINE L2 3205 3272 0 921 168 42 2 chr12 111322591 111322822 -32959667 + L1MA9 LINE L1 5707 5950 -221 3170 61 23 12 chr12 111322822 111323248 -32959241 + L1PA10 LINE L1 5736 6168 0 1706 148 42 45 chr12 111323248 111323622 -32958867 + L1MA9 LINE L1 5936 6312 0 205 396 19 9 chr12 111324040 111324146 -32958343 - L2 LINE L2 -638 2676 2570 1768 189 0 3 chr12 111325087 111325373 -32957116 + AluJo SINE Alu 7 291 -21 278 231 0 15 chr12 111325918 111325983 -32956506 - MIR SINE MIR -5 257 194 335 293 81 41 chr12 111326107 111326230 -32956259 - L2 LINE L2 -2 3311 3184 384 271 17 17 chr12 111326591 111326709 -32955780 - MIR SINE MIR -117 145 28 402 191 61 0 chr12 111326763 111326878 -32955611 - Charlie8 DNA MER1_type -2253 164 43 710 292 130 60 chr12 111327225 111328123 -32954366 - L1M4 LINE L1 -2866 3280 2320 28 61 0 0 chr12 111328142 111328191 -32954298 + AT_rich Low_complexity Low_complexity 1 49 0 941 131 114 6 chr12 111328382 111328557 -32953932 + MER21B LTR ERV1 658 851 -12 557 292 64 19 chr12 111328578 111329178 -32953311 - L1M1 LINE L1 -637 5525 4942 259 250 16 0 chr12 111329260 111329324 -32953165 - MIR SINE MIR 0 262 198 3845 143 57 2 chr12 111329350 111330516 -32951973 + L1PB1 LINE L1 2408 3637 -3225 6004 155 13 7 chr12 111330518 111332302 -32950187 + L1PB1 LINE L1 4711 6508 -359 465 19 0 0 chr12 111332302 111332356 -32950133 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 6004 155 13 7 chr12 111332356 111332718 -32949771 + L1PB1 LINE L1 6508 6866 -1 634 304 83 42 chr12 111332828 111333285 -32949204 - L1M1 LINE L1 -1316 4830 4377 392 249 189 5 chr12 111333352 111333553 -32948936 - L1M1 LINE L1 -2261 3885 3648 322 279 70 8 chr12 111333615 111333744 -32948745 - L1M4 LINE L1 -2385 3761 3625 1479 194 43 0 chr12 111334409 111334734 -32947755 - AluJo SINE Alu 0 312 1 357 253 0 11 chr12 111335063 111335158 -32947331 - MLT1H-int LTR MaLR -1640 95 2 967 292 22 85 chr12 111335162 111335714 -32946775 - MLT1H LTR MaLR -3 546 30 4347 48 0 0 chr12 111335731 111336257 -32946232 + L1PA5 LINE L1 5627 6152 -2 21 82 0 0 chr12 111336453 111336502 -32945987 + AT_rich Low_complexity Low_complexity 1 49 0 333 238 72 76 chr12 111336528 111336805 -32945684 - L1M4 LINE L1 -2741 3405 3130 185 364 160 14 chr12 111337675 111337950 -32944539 + L2 LINE L2 1609 1923 -1391 533 269 29 18 chr12 111338105 111338276 -32944213 + MIR SINE MIR 60 232 -30 2011 206 50 24 chr12 111339119 111339579 -32942910 - MER70A LTR ERVL 0 472 1 198 0 0 0 chr12 111340382 111340404 -32942085 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 244 352 97 17 chr12 111341656 111341832 -32940657 + MIR SINE MIR 54 243 -19 625 250 22 33 chr12 111342123 111342446 -32940043 - LTR16B LTR ERVL 0 464 107 2290 153 68 0 chr12 111342498 111342897 -32939592 + MSTB LTR MaLR 1 426 0 618 254 38 19 chr12 111343505 111343714 -32938775 - MLT1J2 LTR MaLR -233 217 5 600 268 38 13 chr12 111344806 111344963 -32937526 + MIR3 SINE MIR 2 162 -46 2376 99 0 10 chr12 111345317 111345630 -32936859 - AluSq SINE Alu -3 310 1 354 313 19 97 chr12 111346121 111346389 -32936100 + MIR SINE MIR 13 259 -3 204 200 0 0 chr12 111346572 111346622 -32935867 + (AATAG)n Simple_repeat Simple_repeat 1 50 0 2160 67 11 0 chr12 111346783 111347066 -32935423 + L1PA7 LINE L1 5868 6153 -1 321 271 0 0 chr12 111347612 111347719 -32934770 + L1MA8 LINE L1 6184 6290 -1 346 260 53 102 chr12 111348209 111348455 -32934034 - L1ME4a LINE L1 -178 5943 5710 793 220 39 6 chr12 111348720 111348902 -32933587 - MIR SINE MIR 0 262 75 476 303 52 52 chr12 111348898 111349149 -32933340 - MIR SINE MIR -10 252 2 * 223 336 56 9 chr12 111349156 111349263 -32933226 - MIR SINE MIR -79 129 18 2373 78 23 7 chr12 111350320 111350628 -32931861 - AluSq SINE Alu 0 313 1 373 254 63 28 chr12 111351568 111351710 -32930779 + MIR SINE MIR 113 259 -3 255 103 0 0 chr12 111352044 111352083 -32930406 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 521 131 28 28 chr12 111352112 111352219 -32930270 - MLT2B2 LTR ERVL -4 511 405 1185 247 47 6 chr12 111352220 111352689 -32929800 - L1MEc LINE L1 -3874 2522 2035 864 206 0 35 chr12 111352747 111352917 -32929572 - FAM SINE Alu -11 164 1 22 0 0 0 chr12 111352917 111352939 -32929550 + AT_rich Low_complexity Low_complexity 1 22 0 454 235 67 26 chr12 111352939 111352989 -32929500 - L1MEc LINE L1 -5219 1177 1131 2520 72 0 0 chr12 111352989 111353293 -32929196 - AluY SINE Alu -7 304 1 454 235 67 26 chr12 111353293 111354141 -32928348 - L1MEc LINE L1 -5265 1131 159 1702 82 0 0 chr12 111354370 111354613 -32927876 - L1P4 LINE L1 -609 5554 5312 * 1932 126 18 30 chr12 111354573 111354907 -32927582 + L1PA13 LINE L1 5815 6144 -19 515 221 16 0 chr12 111355910 111356032 -32926457 - MER3 DNA MER1_type -30 179 56 2035 114 0 11 chr12 111356473 111356753 -32925736 + AluSc SINE Alu 1 277 -32 219 36 0 0 chr12 111356755 111356783 -32925706 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 304 286 198 62 chr12 111357539 111357768 -32924721 - MIR3 SINE MIR 0 262 5 317 285 13 119 chr12 111358050 111358201 -32924288 - L2 LINE L2 -4 3268 3134 23 0 0 0 chr12 111359780 111359803 -32922686 + AT_rich Low_complexity Low_complexity 1 23 0 683 289 164 4 chr12 111360729 111360954 -32921535 - MIR SINE MIR 0 262 2 407 98 0 0 chr12 111361242 111361303 -32921186 - MER58 DNA MER1_type -3 2417 2357 533 158 20 0 chr12 111361347 111361448 -32921041 - MLT1C LTR MaLR -359 108 6 273 336 97 0 chr12 111361472 111361606 -32920883 - L2 LINE L2 -61 3252 3106 187 213 163 50 chr12 111361823 111361903 -32920586 + MIR SINE MIR 68 156 -106 225 250 50 0 chr12 111362625 111362685 -32919804 + L2 LINE L2 3209 3271 -1 1458 135 151 6 chr12 111362755 111363074 -32919415 + MER47A DNA MER2_type 2 366 0 207 364 114 45 chr12 111363238 111363370 -32919119 - L2 LINE L2 -21 3251 3111 25 31 0 0 chr12 111364236 111364268 -32918221 + AT_rich Low_complexity Low_complexity 1 32 0 237 159 79 0 chr12 111364372 111364435 -32918054 + L1ME4a LINE L1 6049 6116 -5 1672 93 0 0 chr12 111364572 111364798 -32917691 - L1PA8 LINE L1 -8 6164 5939 324 325 50 17 chr12 111365107 111365227 -32917262 + L2 LINE L2 3175 3298 -15 1299 294 40 30 chr12 111365751 111366251 -32916238 + MLT1K LTR MaLR 84 588 0 248 336 103 49 chr12 111366281 111366629 -32915860 - L3 LINE CR1 -9 1568 1202 338 146 252 19 chr12 111366710 111366813 -32915676 - MER53 DNA DNA -62 127 1 1497 260 51 23 chr12 111367151 111367825 -32914664 - L2 LINE L2 -16 3297 2605 821 263 53 24 chr12 111367886 111368133 -32914356 + MIR SINE MIR 6 259 -3 497 218 148 1 chr12 111368280 111368432 -32914057 - MLT1H LTR MaLR -376 173 14 29 70 0 0 chr12 111369738 111369795 -32912694 + AT_rich Low_complexity Low_complexity 1 57 0 300 53 0 0 chr12 111371961 111371999 -32910490 + (TG)n Simple_repeat Simple_repeat 1 38 0 189 107 0 0 chr12 111371998 111372026 -32910463 + (CG)n Simple_repeat Simple_repeat 2 29 0 * 6427 18 0 0 chr12 111372096 111372866 -32909623 - L1PA3 LINE L1 0 6155 5386 2874 46 5 82 chr12 111422868 111423281 -32859208 - SVA Other Other -328 1058 678 774 209 53 0 chr12 111423281 111423468 -32859021 - MIR SINE MIR -3 259 63 199 252 37 37 chr12 111423548 111423683 -32858806 - L2 LINE L2 -181 3091 2957 1372 211 7 18 chr12 111424085 111424364 -32858125 + AluJo SINE Alu 30 305 -7 204 314 183 16 chr12 111424422 111424613 -32857876 + MIR SINE MIR 20 242 -20 200 385 0 0 chr12 111425267 111425319 -32857170 + C-rich Low_complexity Low_complexity 5 56 0 1851 122 65 4 chr12 111426308 111426587 -32855902 - AluSg SINE Alu -14 296 1 398 367 25 50 chr12 111426797 111427157 -32855332 + L2 LINE L2 2917 3267 -5 306 259 221 15 chr12 111427227 111427358 -32855131 - MLT1K LTR MaLR -359 229 72 277 179 143 0 chr12 111429043 111429127 -32853362 + AluS SINE Alu 1 96 -206 2152 58 0 0 chr12 111429247 111429508 -32852981 - AluY SINE Alu -50 261 1 2309 97 0 23 chr12 111429555 111429864 -32852625 - AluSg SINE Alu -8 302 1 1606 207 102 46 chr12 111430090 111430631 -32851858 - L1MB7 LINE L1 -15 6169 5599 437 261 0 0 chr12 111431627 111431765 -32850724 + C-rich Low_complexity Low_complexity 1 138 0 245 333 0 11 chr12 111431779 111431872 -32850617 + C-rich Low_complexity Low_complexity 1 92 0 180 0 0 0 chr12 111432345 111432365 -32850124 + (A)n Simple_repeat Simple_repeat 1 20 0 1032 181 25 29 chr12 111433009 111433213 -32849276 - MER3 DNA MER1_type -5 204 2 326 306 113 40 chr12 111433681 111433777 -32848712 - L1ME LINE L1 -334 5787 5699 483 63 0 0 chr12 111433777 111433840 -32848649 + (TA)n Simple_repeat Simple_repeat 2 64 0 326 306 113 40 chr12 111433840 111434018 -32848471 - L1ME LINE L1 -422 5699 5493 437 306 14 74 chr12 111434352 111434715 -32847774 + L2 LINE L2 2250 2590 -724 492 213 178 0 chr12 111435216 111435366 -32847123 + MER5A DNA MER1_type 6 186 -3 187 301 147 14 chr12 111435392 111435514 -32846975 - MIR SINE MIR -70 192 47 2186 136 0 0 chr12 111435514 111435816 -32846673 + AluSg SINE Alu 1 302 -8 187 301 147 14 chr12 111435816 111435836 -32846653 - MIR SINE MIR -215 47 31 285 191 0 15 chr12 111436156 111436224 -32846265 + (CA)n Simple_repeat Simple_repeat 2 68 0 319 488 0 0 chr12 111436254 111436334 -32846155 + A-rich Low_complexity Low_complexity 1 80 0 2012 96 32 7 chr12 111436682 111436964 -32845525 + AluSc SINE Alu 1 289 -20 1151 225 30 7 chr12 111437439 111437737 -32844752 - MER57B LTR ERV1 0 434 130 2218 116 0 10 chr12 111438098 111438409 -32844080 - AluSg SINE Alu -2 308 1 303 268 72 21 chr12 111438462 111438559 -32843930 - MIR SINE MIR -6 256 155 303 271 33 40 chr12 111439196 111439347 -32843142 - MLT1L LTR MaLR -35 580 431 1949 152 3 7 chr12 111440810 111441106 -32841383 - AluJb SINE Alu -17 295 1 1815 146 55 47 chr12 111441129 111441491 -32840998 + MLT1A1 LTR MaLR 1 365 0 1690 231 56 35 chr12 111441507 111442021 -32840468 - MER20B DNA MER1_type -256 527 3 1081 255 80 5 chr12 111442901 111443301 -32839188 - LTR16A LTR ERVL 0 450 21 602 224 208 0 chr12 111443556 111443739 -32838750 + MER58A DNA MER1_type 1 221 -3 2429 93 0 6 chr12 111444771 111445084 -32837405 + AluSq SINE Alu 1 311 -2 1989 142 0 13 chr12 111445096 111445399 -32837090 + AluSx SINE Alu 1 299 -13 2346 112 3 0 chr12 111446645 111446957 -32835532 + AluSp SINE Alu 1 313 0 243 79 0 0 chr12 111447026 111447064 -32835425 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 541 266 212 0 chr12 111447295 111447479 -32835010 + MER58A DNA MER1_type 1 223 -1 257 208 0 0 chr12 111447500 111447548 -32834941 + L2 LINE L2 3254 3301 -12 934 196 193 63 chr12 111448582 111448944 -32833545 - MLT1J1 LTR MaLR -37 409 1 763 195 87 16 chr12 111449131 111449316 -32833173 + MLT1K LTR MaLR 374 571 -17 545 269 102 0 chr12 111449409 111449606 -32832883 + MIR SINE MIR 16 232 -30 1960 78 0 46 chr12 111450863 111451146 -32831343 + AluY SINE Alu 35 304 -7 2030 127 7 3 chr12 111451502 111451812 -32830677 - AluSx SINE Alu 0 311 1 4156 15 0 0 chr12 111452209 111452670 -32829819 - L1PA3 LINE L1 -176 5979 5519 414 0 0 0 chr12 111453158 111453204 -32829285 + (CA)n Simple_repeat Simple_repeat 2 47 0 2787 13 0 3 chr12 111453475 111453779 -32828710 - AluYb8 SINE Alu -15 303 1 477 301 59 7 chr12 111454035 111454188 -32828301 - MIR3 SINE MIR -28 180 20 257 347 40 16 chr12 111454555 111454679 -32827810 - L2 LINE L2 -4 3268 3142 1016 250 19 11 chr12 111454967 111455227 -32827262 - MIR SINE MIR 0 262 1 25 51 0 0 chr12 111456319 111456358 -32826131 + AT_rich Low_complexity Low_complexity 1 39 0 530 270 61 20 chr12 111458509 111458705 -32823784 - MIR SINE MIR -56 206 3 308 244 83 32 chr12 111459814 111459970 -32822519 - L1ME4a LINE L1 -3 6118 5955 419 245 95 36 chr12 111460130 111460324 -32822165 - L1ME4a LINE L1 -474 5647 5503 442 292 0 0 chr12 111461618 111461755 -32820734 - MER117 DNA MER1_type -33 164 28 184 204 91 0 chr12 111462128 111462172 -32820317 - L2 LINE L2 -4 3268 3221 310 221 70 23 chr12 111462376 111462462 -32820027 + L2 LINE L2 3210 3299 -14 301 250 130 67 chr12 111463086 111463294 -32819195 + MIR SINE MIR 34 254 -8 299 164 18 0 chr12 111463790 111463845 -32818644 - MER5B DNA MER1_type -5 173 118 530 126 153 9 chr12 111463864 111463975 -32818514 + L1MA5A LINE L1 6170 6296 -1 192 237 0 0 chr12 111463984 111464022 -32818467 - MER5B DNA MER1_type -85 93 56 611 271 72 0 chr12 111464206 111464413 -32818076 + MIR SINE MIR 41 262 0 2411 243 57 40 chr12 111465501 111465598 -32816891 - L1MC4 LINE L1 -2 8040 7946 2063 116 39 0 chr12 111465598 111465883 -32816606 + AluSg SINE Alu 1 296 -14 2411 243 57 40 chr12 111465883 111466658 -32815831 - L1MC4 LINE L1 -96 7946 7153 188 268 124 41 chr12 111469410 111469507 -32812982 + L3 LINE CR1 926 1030 -547 582 338 57 0 chr12 111469719 111469929 -32812560 + L3 LINE CR1 1245 1466 -111 435 303 0 15 chr12 111470412 111470544 -32811945 - MIR SINE MIR -11 251 122 1272 209 115 26 chr12 111470557 111470944 -32811545 - MLT1C LTR MaLR -8 459 39 310 297 10 10 chr12 111470964 111471065 -32811424 - MIR SINE MIR -149 113 13 367 321 21 26 chr12 111471618 111471808 -32810681 - Charlie8 DNA MER1_type -2203 214 26 1074 177 41 32 chr12 111471888 111472108 -32810381 - MLT1A1 LTR MaLR 0 365 144 435 208 10 0 chr12 111472124 111472225 -32810264 - U13 snRNA snRNA -2 102 1 817 107 160 8 chr12 111472226 111472357 -32810132 - MLT1A1 LTR MaLR -214 151 1 1157 264 111 106 chr12 111472409 111472892 -32809597 - L2 LINE L2 -255 3058 2579 583 180 0 0 chr12 111472892 111472981 -32809508 + AluJ/FLAM SINE Alu 5 93 -219 1157 264 111 106 chr12 111472981 111473765 -32808724 - L2 LINE L2 -734 2579 1706 248 254 55 36 chr12 111473781 111473891 -32808598 - L1MC5 LINE L1 -48 7913 7802 436 297 202 81 chr12 111473912 111474366 -32808123 - L2 LINE L2 -1596 1718 1320 2121 152 39 14 chr12 111474366 111474721 -32807768 - THE1B LTR MaLR 0 364 1 436 297 202 81 chr12 111474721 111475605 -32806884 - L2 LINE L2 -1994 1320 219 585 289 66 25 chr12 111476466 111476663 -32805826 + MIR SINE MIR 3 207 -55 486 257 0 0 chr12 111476712 111476860 -32805629 + (TG)n Simple_repeat Simple_repeat 2 149 0 1868 141 3 10 chr12 111477389 111477686 -32804803 + AluSx SINE Alu 1 295 -17 309 284 93 19 chr12 111477901 111478063 -32804426 + L1MEd LINE L1 775 948 -5171 413 216 108 24 chr12 111478105 111478272 -32804217 + L1ME4a LINE L1 5940 6120 -1 332 311 43 37 chr12 111478623 111478787 -32803702 + L3 LINE CR1 1369 1533 -44 392 261 0 0 chr12 111478842 111478934 -32803555 + MER103 DNA DNA 23 114 -52 667 281 158 10 chr12 111478966 111479169 -32803320 - MIR SINE MIR -21 241 9 1568 107 167 8 chr12 111479340 111479592 -32802897 - AluSg SINE Alu -8 292 1 225 83 28 0 chr12 111479670 111479706 -32802783 + MER103 DNA DNA 109 145 -21 2506 74 16 0 chr12 111480214 111480537 -32801952 + L1PA13 LINE L1 5825 6152 -11 761 265 47 9 chr12 111480615 111480826 -32801663 - MIR SINE MIR 0 262 44 26 30 0 0 chr12 111481749 111481782 -32800707 + AT_rich Low_complexity Low_complexity 1 33 0 1418 181 0 53 chr12 111481949 111482252 -32800237 + AluJo SINE Alu 1 287 -25 253 295 26 26 chr12 111482487 111482565 -32799924 - LTR67 LTR ERVL -366 191 114 240 0 24 48 chr12 111482865 111482907 -32799582 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 2031 138 0 0 chr12 111483212 111483503 -32798986 + AluSx SINE Alu 4 294 -18 1867 146 3 3 chr12 111483709 111484004 -32798485 + AluJb SINE Alu 5 299 -13 1529 291 58 38 chr12 111485397 111485967 -32796522 - L1MEc LINE L1 -4305 2091 1494 2026 139 0 0 chr12 111485967 111486277 -32796212 + AluY SINE Alu 1 310 -1 1529 291 58 38 chr12 111486277 111486644 -32795845 - L1MEc LINE L1 -4902 1494 1136 43541 53 2 3 chr12 111486654 111487421 -32795068 - L1PA5 LINE L1 -3 6151 5385 2092 77 3 14 chr12 111487421 111487706 -32794783 - AluY SINE Alu -29 282 1 43541 53 2 3 chr12 111487706 111493100 -32789389 - L1PA5 LINE L1 -769 5385 1 1144 227 93 0 chr12 111493102 111493498 -32788991 - L1MEc LINE L1 -5239 1157 725 281 364 36 29 chr12 111494096 111494236 -32788253 - MER5A DNA MER1_type 0 189 49 486 257 10 0 chr12 111494237 111494338 -32788151 + MER91A DNA MER1_type 50 151 -45 202 253 61 81 chr12 111494356 111494455 -32788034 + MER91A DNA MER1_type 90 186 -10 1159 257 111 17 chr12 111494456 111494872 -32787617 - LTR16B LTR ERVL -2 462 8 2041 118 49 22 chr12 111494880 111495245 -32787244 - THE1C LTR MaLR 0 375 1 194 269 21 86 chr12 111495254 111495347 -32787142 - MER5A DNA MER1_type -100 89 3 271 275 84 66 chr12 111496704 111496871 -32785618 - MIR SINE MIR -73 189 20 186 243 100 43 chr12 111497069 111497139 -32785350 + MIR SINE MIR 12 85 -177 2525 134 0 3 chr12 111497385 111497751 -32784738 + MLT1A1 LTR MaLR 1 365 0 558 243 23 8 chr12 111497902 111498051 -32784438 + MIR SINE MIR 42 193 -62 2556 109 19 6 chr12 111498068 111498427 -32784062 + THE1B LTR MaLR 1 364 0 208 328 0 16 chr12 111498781 111498842 -32783647 + L2 LINE L2 3206 3265 -7 436 346 48 22 chr12 111499060 111499288 -32783201 + L2 LINE L2 2871 3104 -168 409 345 38 29 chr12 111499288 111499497 -32782992 + MIR SINE MIR 4 214 -48 318 106 0 0 chr12 111499891 111499938 -32782551 + (CA)n Simple_repeat Simple_repeat 2 48 0 1646 126 7 57 chr12 111500080 111500381 -32782108 + AluY SINE Alu 1 286 -25 253 295 26 26 chr12 111500616 111500694 -32781795 - LTR67 LTR ERVL -366 191 114 240 0 24 48 chr12 111500994 111501036 -32781453 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 2031 138 0 0 chr12 111501341 111501632 -32780857 + AluSx SINE Alu 4 294 -18 1867 146 3 3 chr12 111501838 111502133 -32780356 + AluJb SINE Alu 5 299 -13 2058 185 19 46 chr12 111503985 111504461 -32778028 - MLT1C LTR MaLR -3 464 2 635 216 59 64 chr12 111505515 111505719 -32776770 - MLT1J LTR MaLR -154 357 155 264 250 0 0 chr12 111505723 111505787 -32776702 - L1M4 LINE L1 -1534 4612 4549 398 314 117 26 chr12 111505919 111506121 -32776368 - MIR SINE MIR -39 169 3 190 226 22 28 chr12 111506215 111506315 -32776174 + MIR SINE MIR 72 231 -31 856 214 63 75 chr12 111506533 111506785 -32775704 + MIR SINE MIR 3 251 -11 276 30 0 0 chr12 111506885 111506918 -32775571 + (TC)n Simple_repeat Simple_repeat 2 34 0 206 176 0 0 chr12 111507416 111507450 -32775039 - L2 LINE L2 0 3313 3280 305 197 40 13 chr12 111507453 111507529 -32774960 + MER116 DNA Mariner 3 80 0 230 306 16 0 chr12 111507568 111507630 -32774859 - L2 LINE L2 0 3313 3251 329 305 121 21 chr12 111507658 111507799 -32774690 - MIR SINE MIR -11 251 97 1611 189 3 6 chr12 111508273 111508585 -32773904 - AluJo SINE Alu -1 311 1 414 0 0 0 chr12 111508836 111508882 -32773607 + (TG)n Simple_repeat Simple_repeat 1 46 0 644 296 40 10 chr12 111509069 111509268 -32773221 - MIR SINE MIR -14 248 44 377 258 132 19 chr12 111509330 111509489 -32773000 + MIR SINE MIR 86 262 0 239 257 22 117 chr12 111509610 111509789 -32772700 - L3 LINE CR1 -125 1452 1291 232 245 58 65 chr12 111510250 111510389 -32772100 - L1ME LINE L1 -199 5922 5785 386 206 83 144 chr12 111510664 111510774 -32771715 - MIR SINE MIR -11 251 155 1714 172 3 7 chr12 111510774 111511064 -32771425 - AluJb SINE Alu -23 289 1 386 206 83 144 chr12 111511064 111511133 -32771356 - MIR SINE MIR -107 155 83 212 239 68 119 chr12 111511285 111511461 -32771028 - MIR SINE MIR -8 254 88 718 208 107 19 chr12 111512155 111512314 -32770175 - MIR SINE MIR 0 262 90 2422 68 3 3 chr12 111512323 111512632 -32769857 - AluSp SINE Alu -4 309 1 570 239 176 0 chr12 111512867 111513026 -32769463 + MER3 DNA MER1_type 2 188 -21 1046 256 109 22 chr12 111513039 111513450 -32769039 - L2 LINE L2 -338 2976 2530 1741 166 0 27 chr12 111513460 111513761 -32768728 - AluJo SINE Alu -19 293 1 1767 161 9 28 chr12 111513765 111514082 -32768407 - AluJb SINE Alu -1 311 1 464 242 16 40 chr12 111514231 111514355 -32768134 + L2 LINE L2 3193 3313 0 323 303 63 49 chr12 111514907 111515049 -32767440 + MIR3 SINE MIR 1 144 -64 217 253 168 21 chr12 111515728 111515823 -32766666 - L3 LINE CR1 -2 1575 1467 215 265 128 17 chr12 111516044 111516161 -32766328 + MIR SINE MIR 2 131 -131 1289 115 0 0 chr12 111516255 111516437 -32766052 - AluSp SINE Alu -2 311 130 331 300 88 53 chr12 111516443 111516574 -32765915 - L1ME4a LINE L1 -3 6118 5974 1007 233 96 94 chr12 111516574 111517022 -32765467 - MLT1J LTR MaLR 0 511 60 2136 123 0 0 chr12 111517022 111517324 -32765165 + AluSx SINE Alu 1 302 -10 1007 233 96 94 chr12 111517324 111517385 -32765104 - MLT1J LTR MaLR -451 60 1 331 300 88 53 chr12 111517385 111517480 -32765009 - L1ME4a LINE L1 -147 5974 5884 531 256 50 19 chr12 111517709 111517869 -32764620 + MIR SINE MIR 8 172 -90 654 13 0 0 chr12 111517894 111517969 -32764520 + (CA)n Simple_repeat Simple_repeat 1 75 0 805 226 133 4 chr12 111518614 111518848 -32763641 + L1MD3 LINE L1 7730 7993 -2 2391 62 0 34 chr12 111518857 111519179 -32763310 + AluY SINE Alu 1 311 0 668 269 41 0 chr12 111519240 111519411 -32763078 + MIR SINE MIR 15 192 -70 687 257 108 40 chr12 111519414 111519710 -32762779 - L2 LINE L2 0 3313 2998 1268 138 0 5 chr12 111520118 111520314 -32762175 + AluSx SINE Alu 1 195 -117 431 309 51 14 chr12 111521334 111521551 -32760938 + L1ME4a LINE L1 5570 5794 -327 328 291 120 40 chr12 111522018 111522193 -32760296 + L1ME4a LINE L1 5816 6004 -117 545 199 45 58 chr12 111522210 111522366 -32760123 + L1ME4a LINE L1 5968 6121 0 762 296 36 28 chr12 111522810 111523057 -32759432 - MIR SINE MIR -12 250 2 200 262 36 71 chr12 111523489 111523573 -32758916 + MIR SINE MIR 35 115 -147 762 229 93 15 chr12 111523652 111523857 -32758632 + MIR SINE MIR 32 252 -10 275 248 9 0 chr12 111523857 111523962 -32758527 + (ATG)n Simple_repeat Simple_repeat 3 108 0 1890 146 14 0 chr12 111523977 111524271 -32758218 + AluSx SINE Alu 1 298 -14 226 229 0 0 chr12 111524436 111524484 -32758005 - L2 LINE L2 -2 3270 3223 917 277 23 0 chr12 111525126 111525346 -32757143 + MIR SINE MIR 17 241 -21 515 285 0 8 chr12 111525690 111525813 -32756676 + L2 LINE L2 3192 3313 0 343 231 187 8 chr12 111525810 111525944 -32756545 - MIR SINE MIR -77 185 28 * 185 243 0 0 chr12 111526251 111526288 -32756201 + MIR SINE MIR 88 124 -138 230 85 0 0 chr12 111526294 111526341 -32756148 - LTR66 LTR ERVL -157 453 407 43 35 0 0 chr12 111526341 111526398 -32756091 + AT_rich Low_complexity Low_complexity 1 57 0 1661 181 10 0 chr12 111526398 111526697 -32755792 - AluJb SINE Alu -10 302 1 923 260 66 40 chr12 111526753 111527270 -32755219 - L2 LINE L2 -126 3187 2655 418 213 71 49 chr12 111527658 111527881 -32754608 - MLT1H LTR MaLR -16 526 223 221 250 200 0 chr12 111528616 111528676 -32753813 + MIR SINE MIR 190 261 -1 517 319 0 0 chr12 111528876 111528995 -32753494 + MIR SINE MIR 23 141 -121 180 111 0 0 chr12 111528998 111529025 -32753464 + (ATG)n Simple_repeat Simple_repeat 2 28 0 1459 201 48 91 chr12 111529054 111529573 -32752916 - MER34 LTR ERV1 -3 539 44 1910 148 0 0 chr12 111529573 111529870 -32752619 - AluSx SINE Alu -15 297 1 1459 201 48 91 chr12 111529870 111529913 -32752576 - MER34 LTR ERV1 -498 44 1 216 298 0 0 chr12 111529918 111529975 -32752514 + (TGG)n Simple_repeat Simple_repeat 2 58 0 259 204 0 0 chr12 111530011 111530055 -32752434 + MIR SINE MIR 213 256 -6 225 259 17 0 chr12 111530104 111530162 -32752327 - MER5A DNA MER1_type -1 188 130 321 252 107 0 chr12 111530314 111530417 -32752072 + MIR3 SINE MIR 77 190 -18 597 222 33 19 chr12 111531027 111531181 -32751308 + MIR SINE MIR 102 258 -4 743 277 103 0 chr12 111531244 111531468 -32751021 + MIR SINE MIR 6 252 -10 786 308 11 0 chr12 111532417 111532677 -32749812 + L1ME3 LINE L1 5892 6154 -8 1651 109 121 8 chr12 111533297 111533562 -32748927 - AluSg1 SINE Alu -14 295 1 2004 108 37 0 chr12 111534125 111534421 -32748068 + AluSx SINE Alu 1 307 -5 1577 136 83 0 chr12 111534886 111535151 -32747338 - AluJb SINE Alu -25 287 1 307 282 127 0 chr12 111535288 111535440 -32747049 - MIR SINE MIR -68 140 20 259 242 16 0 chr12 111535957 111536019 -32746470 + L2 LINE L2 3201 3263 -9 3508 147 87 29 chr12 111536185 111536884 -32745605 + L1MB7 LINE L1 5430 6169 -15 2171 100 0 23 chr12 111537110 111537419 -32745070 + AluSg SINE Alu 1 302 -8 2105 117 3 0 chr12 111537462 111537761 -32744728 + AluSx SINE Alu 1 300 -12 3199 171 22 15 chr12 111538050 111538653 -32743836 + L1MB3 LINE L1 5541 6147 -36 232 245 58 65 chr12 111539381 111539520 -32742969 - L1ME LINE L1 -199 5922 5785 234 260 156 10 chr12 111539795 111539891 -32742598 - MIR SINE MIR -11 251 142 1332 229 10 14 chr12 111539905 111540193 -32742296 - AluJo SINE Alu -13 289 3 23 0 0 0 chr12 111540378 111540401 -32742088 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr12 111540471 111540492 -32741997 + (T)n Simple_repeat Simple_repeat 1 21 0 530 301 59 7 chr12 111540918 111541071 -32741418 + MIR3 SINE MIR 20 180 -28 2118 98 3 13 chr12 111541326 111541632 -32740857 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr12 111543123 111543144 -32739345 + AT_rich Low_complexity Low_complexity 1 21 0 2151 115 0 0 chr12 111543208 111543520 -32738969 + AluSx SINE Alu 1 312 0 1245 171 26 9 chr12 111543537 111543792 -32738697 + AluJb SINE Alu 51 309 0 295 239 34 51 chr12 111545595 111545771 -32736718 + (CATATA)n Simple_repeat Simple_repeat 5 177 0 33 73 0 0 chr12 111545883 111545951 -32736538 + AT_rich Low_complexity Low_complexity 1 68 0 223 280 129 15 chr12 111546514 111546646 -32735843 + L2 LINE L2 1639 1785 -1529 1405 181 22 48 chr12 111546938 111547046 -32735443 + MER58B DNA MER1_type 32 141 -2279 1917 127 13 3 chr12 111547046 111547346 -32735143 + AluSx SINE Alu 1 303 -9 1405 181 22 48 chr12 111547346 111547551 -32734938 + MER58B DNA MER1_type 141 337 -4 434 253 39 113 chr12 111547688 111547727 -32734762 + MARNA DNA Mariner 280 320 -266 1645 92 5 0 chr12 111547727 111547972 -32734517 + AluSg/x SINE Alu 66 311 0 434 253 39 113 chr12 111547972 111548188 -32734301 + MARNA DNA Mariner 320 517 -69 516 275 171 24 chr12 111548274 111548485 -32734004 + MIR SINE MIR 2 243 -19 270 296 62 0 chr12 111548501 111548582 -32733907 + MIR SINE MIR 60 145 -117 203 179 0 0 chr12 111548725 111548764 -32733725 + A-rich Low_complexity Low_complexity 1 39 0 544 230 80 61 chr12 111548908 111549121 -32733368 + MIR SINE MIR 21 237 -25 185 241 167 0 chr12 111549087 111549141 -32733348 + L2 LINE L2 3208 3270 -2 * 288 184 105 79 chr12 111549914 111550028 -32732461 - MIR SINE MIR -59 149 33 559 294 151 33 chr12 111550498 111551057 -32731432 - L2 LINE L2 0 3313 2681 1988 139 3 3 chr12 111551133 111551434 -32731055 - AluSx SINE Alu -11 301 1 353 191 103 0 chr12 111551490 111551558 -32730931 - MARNA DNA Mariner -185 401 327 26 82 0 0 chr12 111552042 111552103 -32730386 + AT_rich Low_complexity Low_complexity 1 61 0 340 289 179 24 chr12 111552163 111552499 -32729990 - L1ME4a LINE L1 -207 5914 5527 1636 188 3 17 chr12 111552611 111552903 -32729586 + AluJo SINE Alu 1 288 -24 263 288 14 0 chr12 111553159 111553232 -32729257 + MIR SINE MIR 187 260 -2 2222 112 0 0 chr12 111553593 111553906 -32728583 + AluSq SINE Alu 1 313 0 420 212 212 8 chr12 111553907 111554039 -32728450 - MER103 DNA DNA 0 166 8 1491 180 6 53 chr12 111554539 111554719 -32727770 - AluJo SINE Alu -5 307 120 207 0 0 0 chr12 111554719 111554742 -32727747 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1715 122 59 0 chr12 111554742 111554996 -32727493 - AluSx SINE Alu -27 285 17 1491 180 6 53 chr12 111554996 111555136 -32727353 - AluJo SINE Alu -190 122 1 2271 65 37 0 chr12 111555146 111555440 -32727049 - AluY SINE Alu -6 305 1 435 289 16 0 chr12 111555444 111555572 -32726917 - L1ME4a LINE L1 -296 5825 5696 2174 173 83 28 chr12 111555816 111556081 -32726408 + LTR42 LTR ERVL 1 305 -190 2060 121 3 46 chr12 111556081 111556429 -32726060 + MER1B DNA MER1_type 1 333 -4 2174 173 83 28 chr12 111556429 111556632 -32725857 + LTR42 LTR ERVL 305 495 0 268 297 31 55 chr12 111556965 111557093 -32725396 - MER20B DNA MER1_type -596 187 63 498 321 75 9 chr12 111558562 111558774 -32723715 - MIR SINE MIR -21 241 16 1958 122 90 35 chr12 111559928 111560273 -32722216 - THE1B LTR MaLR 0 364 1 829 237 76 13 chr12 111560415 111560651 -32721838 + MIR SINE MIR 12 262 0 1153 154 315 0 chr12 111561466 111561739 -32720750 + MER47A DNA MER2_type 1 359 -7 2127 105 3 3 chr12 111562044 111562350 -32720139 - AluSq SINE Alu -7 306 1 225 321 49 0 chr12 111562919 111563000 -32719489 + MER91 DNA MER1_type 45 129 -67 2147 86 3 30 chr12 111563000 111563303 -32719186 - AluSx SINE Alu -17 295 1 854 237 45 5 chr12 111563505 111563703 -32718786 + MER6B DNA MER2_type 5 210 0 224 286 25 0 chr12 111563816 111563935 -32718554 + (TA)n Simple_repeat Simple_repeat 1 122 0 1063 219 25 14 chr12 111564167 111564411 -32718078 - MIR SINE MIR -3 259 16 2026 142 0 0 chr12 111565089 111565398 -32717091 + AluSx SINE Alu 1 309 -3 1654 94 47 33 chr12 111565565 111565840 -32716649 - L1PA13 LINE L1 -60 6103 5825 1054 188 147 0 chr12 111565957 111566181 -32716308 + MIR SINE MIR 6 262 0 309 326 125 18 chr12 111566215 111566439 -32716050 + HAL1 LINE L1 47 294 -2213 540 242 146 69 chr12 111566439 111566806 -32715683 + HAL1 LINE L1 1687 2150 -357 2143 112 3 0 chr12 111566806 111567109 -32715380 + AluSq SINE Alu 1 304 -9 540 242 146 69 chr12 111567109 111567314 -32715175 + HAL1 LINE L1 2150 2338 -169 2191 118 0 0 chr12 111567602 111567907 -32714582 + AluSx SINE Alu 3 307 -5 1819 112 130 30 chr12 111569707 111570037 -32712452 + THE1B LTR MaLR 2 364 0 518 300 43 13 chr12 111570907 111571137 -32711352 - MIR SINE MIR -14 248 12 21 57 0 0 chr12 111571513 111571548 -32710941 + AT_rich Low_complexity Low_complexity 1 35 0 199 316 71 53 chr12 111571981 111572029 -32710460 + L2 LINE L2 1271 1317 -1997 1850 171 49 17 chr12 111572029 111572379 -32710110 + THE1B LTR MaLR 4 364 0 199 316 71 53 chr12 111572379 111572555 -32709934 + L2 LINE L2 1317 1499 -1815 216 276 26 0 chr12 111572568 111572644 -32709845 + (CTAA)n Simple_repeat Simple_repeat 4 81 0 330 337 77 6 chr12 111572652 111572833 -32709656 + L2 LINE L2 1525 1718 -1596 256 259 54 36 chr12 111572854 111572966 -32709523 + L1MC5 LINE L1 7802 7915 -46 905 293 139 31 chr12 111572991 111573739 -32708750 + L2 LINE L2 1712 2540 -774 578 180 0 0 chr12 111573768 111573857 -32708632 - AluJ/FLAM SINE Alu -219 93 5 587 300 98 21 chr12 111573871 111574339 -32708150 + L2 LINE L2 2552 3058 -255 388 171 150 71 chr12 111574391 111574531 -32707958 + MLT1A1 LTR MaLR 1 151 -214 2582 95 46 0 chr12 111574989 111575337 -32707152 - THE1B LTR MaLR 0 364 1 580 326 39 13 chr12 111575389 111575622 -32706867 + MIR SINE MIR 10 248 -14 447 231 107 30 chr12 111576619 111576788 -32705701 - L2 LINE L2 -14 3299 3118 1983 177 111 20 chr12 111576957 111577398 -32705091 + L1MC3 LINE L1 7298 7778 -7 5571 198 28 24 chr12 111577692 111577960 -32704529 - L1PBa LINE L1 -5225 1638 1372 2333 93 0 3 chr12 111577960 111578251 -32704238 - AluY SINE Alu -17 294 5 5571 198 28 24 chr12 111578251 111579973 -32702516 - L1PBa LINE L1 -5491 1372 558 550 271 65 62 chr12 111581662 111581954 -32700535 - L1ME1 LINE L1 -4 6162 5870 1291 195 74 4 chr12 111582569 111582826 -32699663 + AluJo SINE Alu 6 280 -32 297 268 89 0 chr12 111582956 111583079 -32699410 - MIR SINE MIR -55 207 74 181 315 0 0 chr12 111583093 111583147 -32699342 + MIR SINE MIR 202 255 -7 936 193 221 9 chr12 111583194 111583278 -32699211 + Charlie1b DNA MER1_type 1 66 -2695 2157 165 54 48 chr12 111583278 111583780 -32698709 + MLT1D LTR MaLR 1 505 0 936 193 221 9 chr12 111583780 111584011 -32698478 + Charlie1b DNA MER1_type 66 383 -140 2049 114 0 4 chr12 111584018 111584290 -32698199 + AluSx SINE Alu 3 273 -39 23 0 0 0 chr12 111584313 111584336 -32698153 + AT_rich Low_complexity Low_complexity 1 23 0 263 171 0 57 chr12 111584336 111584406 -32698083 + Charlie1b DNA MER1_type 365 430 -93 251 239 42 0 chr12 111584450 111584521 -32697968 + Charlie1b DNA MER1_type 443 516 -7 271 330 96 4 chr12 111585191 111585410 -32697079 + L3 LINE CR1 1231 1553 -24 2237 131 0 3 chr12 111585740 111586053 -32696436 - AluSx SINE Alu 0 312 1 846 232 76 0 chr12 111586252 111586437 -32696052 - MER58A DNA MER1_type -16 208 10 489 266 51 9 chr12 111586484 111586685 -32695804 - L1MEc LINE L1 -3794 2421 2236 256 289 134 0 chr12 111586951 111587100 -32695389 - HAL1 LINE L1 -867 1640 1472 891 269 39 0 chr12 111587128 111587362 -32695127 - MIR SINE MIR -11 251 9 1953 239 75 56 chr12 111587427 111588130 -32694359 - L1MEc LINE L1 -4863 1342 621 1879 125 75 31 chr12 111588130 111588489 -32694000 + THE1C LTR MaLR 1 375 0 1953 239 75 56 chr12 111588489 111588573 -32693916 - L1MEc LINE L1 -5584 621 540 2195 128 0 3 chr12 111588828 111589134 -32693355 - AluSx SINE Alu -7 305 1 421 319 37 6 chr12 111589134 111589297 -32693192 - L1MEc LINE L1 -5950 255 88 478 256 8 30 chr12 111589381 111589514 -32692975 + MER5A DNA MER1_type 60 189 0 676 305 94 0 chr12 111590655 111590911 -32691578 + L3 LINE CR1 969 1248 -329 216 313 44 84 chr12 111591033 111591282 -32691207 + L2 LINE L2 3004 3242 -30 315 313 31 18 chr12 111592274 111592437 -32690052 + L1MC3 LINE L1 5815 5979 -1806 * 1378 143 91 71 chr12 111592315 111592525 -32689964 + L1MB7 LINE L1 5855 6074 -110 1831 169 0 0 chr12 111592525 111592809 -32689680 - AluJo SINE Alu -28 284 1 1378 143 91 71 chr12 111592809 111592906 -32689583 + L1MB7 LINE L1 6074 6168 -16 594 258 168 18 chr12 111592971 111593239 -32689250 - L1ME4a LINE L1 -43 6078 5733 1173 208 22 0 chr12 111593239 111593470 -32689019 - MER46A DNA MER2_type 0 236 1 594 258 168 18 chr12 111593470 111593589 -32688900 - L1ME4a LINE L1 -388 5733 5633 3859 188 91 38 chr12 111593600 111594533 -32687956 + Looper DNA T2_type 10 992 -566 833 268 34 8 chr12 111594624 111594863 -32687626 - MIR SINE MIR -1 261 17 2146 130 7 0 chr12 111595469 111595762 -32686727 - AluSx SINE Alu -17 295 1 3166 153 80 5 chr12 111596848 111597435 -32685054 - L1MB3 LINE L1 -2 6181 5551 465 206 4 59 chr12 111598204 111598397 -32684092 + MLT1I LTR MaLR 272 407 -2 371 301 59 33 chr12 111598419 111598572 -32683917 + MLT1K LTR MaLR 73 229 -359 838 220 22 16 chr12 111599783 111599965 -32682524 + L1ME LINE L1 5517 5699 -422 248 276 55 48 chr12 111600781 111600906 -32681583 + MIR SINE MIR 3 127 -81 1254 154 77 5 chr12 111601299 111601519 -32680970 + MER46A DNA MER2_type 1 236 0 355 232 20 20 chr12 111601589 111601688 -32680801 + L2 LINE L2 3174 3272 0 355 261 54 39 chr12 111601795 111601925 -32680564 - L2 LINE L2 0 3272 3141 182 301 68 48 chr12 111602560 111602663 -32679826 + L2 LINE L2 3183 3287 -26 1082 176 56 23 chr12 111602895 111603111 -32679378 - AluJo SINE Alu -4 308 86 201 74 0 0 chr12 111603900 111603927 -32678562 + (TC)n Simple_repeat Simple_repeat 2 28 0 181 304 137 10 chr12 111604521 111604623 -32677866 - MIR3 SINE MIR -3 205 91 574 324 167 18 chr12 111605164 111605847 -32676642 - L2 LINE L2 -704 2610 1826 437 265 93 6 chr12 111607115 111607277 -32675212 + MIR SINE MIR 47 222 -40 2337 108 0 0 chr12 111608736 111609041 -32673448 - AluSx SINE Alu -7 305 1 301 253 11 0 chr12 111609088 111609175 -32673314 - L1MC4 LINE L1 0 8042 7955 810 128 0 0 chr12 111609196 111609313 -32673176 - FLAM_C SINE Alu -16 127 11 1321 186 105 85 chr12 111609329 111609766 -32672723 - L1MC4 LINE L1 -84 7958 7508 2007 172 0 0 chr12 111609766 111610068 -32672421 - AluJb SINE Alu -10 302 1 1321 186 105 85 chr12 111610068 111610135 -32672354 - L1MC4 LINE L1 -534 7508 7444 327 307 0 51 chr12 111611752 111611807 -32670682 + MIR SINE MIR 79 135 -127 982 173 151 58 chr12 111611807 111611968 -32670521 - MER2 DNA MER2_type -2 342 197 1927 155 0 3 chr12 111611968 111612264 -32670225 + AluJo SINE Alu 1 295 -17 982 173 151 58 chr12 111612264 111612414 -32670075 - MER2 DNA MER2_type -147 197 2 327 307 0 51 chr12 111612414 111612495 -32669994 + MIR SINE MIR 135 208 -54 189 142 38 57 chr12 111613474 111613580 -32668909 + C-rich Low_complexity Low_complexity 3 106 0 183 178 20 50 chr12 111613688 111613789 -32668700 + (CGG)n Simple_repeat Simple_repeat 3 100 0 636 106 0 0 chr12 111614419 111614513 -32667976 + (AGATG)n Simple_repeat Simple_repeat 4 97 0 233 280 121 7 chr12 111614718 111614851 -32667638 - MIR SINE MIR -53 155 15 3154 164 53 80 chr12 111615284 111615351 -32667138 - L1MD2 LINE L1 0 6359 6292 1536 175 34 10 chr12 111615351 111615642 -32666847 + AluJb SINE Alu 1 298 -14 3154 164 53 80 chr12 111615642 111616387 -32666102 - L1MD2 LINE L1 -67 6292 5569 408 270 0 0 chr12 111616447 111616562 -32665927 + MIR SINE MIR 117 231 -31 2698 96 6 0 chr12 111616599 111616952 -32665537 + THE1A LTR MaLR 1 355 0 8936 129 36 44 chr12 111616952 111618718 -32663771 + THE1A-int LTR MaLR 1 1651 0 2707 81 0 8 chr12 111618718 111619076 -32663413 + THE1A LTR MaLR 1 355 0 187 296 0 0 chr12 111619210 111619254 -32663235 + MIR SINE MIR 219 262 0 400 267 35 9 chr12 111619348 111619464 -32663025 + MIR3 SINE MIR 69 187 -21 1424 150 101 16 chr12 111620173 111620533 -32661956 - L1MC2 LINE L1 0 7785 6288 1017 158 51 47 chr12 111620696 111620911 -32661578 + MER20 DNA MER1_type 1 216 -3 22 56 0 0 chr12 111621416 111621452 -32661037 + AT_rich Low_complexity Low_complexity 1 36 0 1504 174 37 7 chr12 111621881 111622151 -32660338 - AluSx SINE Alu -32 280 3 1706 172 58 3 chr12 111622466 111623455 -32659034 + L1MB3 LINE L1 5010 6175 -8 222 214 0 0 chr12 111623531 111623573 -32658916 + GA-rich Low_complexity Low_complexity 3 44 0 269 91 68 0 chr12 111623688 111623732 -32658757 + MER45 DNA AcHobo 1532 1578 -3 253 271 49 49 chr12 111623741 111623793 -32658696 + MIR SINE MIR 107 158 -104 2039 180 66 0 chr12 111623793 111624171 -32658318 + MER57A LTR ERV1 1 403 0 253 271 49 49 chr12 111624171 111624240 -32658249 + MIR SINE MIR 157 228 -34 964 299 103 25 chr12 111624251 111625023 -32657466 - L2 LINE L2 -4 3309 2472 324 231 0 0 chr12 111625926 111626004 -32656485 + MER116 DNA Mariner 1 78 -2 638 282 65 75 chr12 111626847 111627234 -32655255 - L2 LINE L2 -15 3298 2916 261 353 14 41 chr12 111627581 111627729 -32654760 + MIR SINE MIR 9 151 -62 621 237 7 7 chr12 111629089 111629228 -32653261 + MIR SINE MIR 23 161 -101 356 270 0 36 chr12 111629235 111629346 -32653143 + MIR SINE MIR 98 204 -58 182 128 26 0 chr12 111629455 111629494 -32652995 + (ATG)n Simple_repeat Simple_repeat 3 42 0 239 339 0 0 chr12 111630174 111630239 -32652250 - MIR SINE MIR 0 262 198 256 237 0 133 chr12 111630584 111630719 -32651770 + MER103 DNA DNA 5 121 -45 333 255 19 9 chr12 111630948 111631054 -32651435 - MLT1J2 LTR MaLR 0 450 344 396 271 52 0 chr12 111631054 111631150 -32651339 - MER5B DNA MER1_type -28 150 50 186 293 43 86 chr12 111631056 111631172 -32651317 + MER5B DNA MER1_type 31 141 -37 * 198 0 0 0 chr12 111631273 111631295 -32651194 + (GA)n Simple_repeat Simple_repeat 1 22 0 1005 260 57 0 chr12 111631514 111631760 -32650729 + MIR SINE MIR 2 261 -1 216 265 0 0 chr12 111633596 111633645 -32648844 + MIR SINE MIR 79 127 -135 318 138 0 0 chr12 111633675 111633733 -32648756 + (CAT)n Simple_repeat Simple_repeat 2 59 0 356 216 58 72 chr12 111634202 111634341 -32648148 + MIR SINE MIR 70 206 -56 305 374 103 0 chr12 111635067 111635222 -32647267 - MIR SINE MIR -71 191 21 544 230 24 16 chr12 111635442 111635568 -32646921 - L2 LINE L2 0 3313 3187 260 337 0 0 chr12 111635837 111635926 -32646563 - MER117 DNA MER1_type 0 197 109 22 0 0 0 chr12 111636376 111636398 -32646091 + AT_rich Low_complexity Low_complexity 1 22 0 2124 130 0 0 chr12 111636401 111636694 -32645795 + AluSx SINE Alu 1 293 -19 688 172 30 15 chr12 111637309 111637443 -32645046 + U8 snRNA snRNA 1 136 0 261 98 0 0 chr12 111637579 111637620 -32644869 + (CA)n Simple_repeat Simple_repeat 2 42 0 4481 182 51 5 chr12 111637738 111638667 -32643822 - L1MA10 LINE L1 -7 6327 5357 22 35 0 0 chr12 111640093 111640122 -32642367 + AT_rich Low_complexity Low_complexity 1 29 0 292 325 80 16 chr12 111640847 111641035 -32641454 - MIR SINE MIR -62 200 1 310 267 178 7 chr12 111641580 111641715 -32640774 + MIR SINE MIR 28 185 -77 1159 144 35 0 chr12 111642002 111642175 -32640314 + AluSg/x SINE Alu 129 307 -5 292 360 22 37 chr12 111643990 111644126 -32638363 - L2 LINE L2 -14 3258 3125 193 363 15 22 chr12 111644154 111644289 -32638200 - MIR SINE MIR -127 135 2 389 253 150 59 chr12 111644624 111644727 -32637762 + MIR SINE MIR 3 95 -167 827 142 118 0 chr12 111644727 111644896 -32637593 + MER53 DNA DNA 1 189 0 389 253 150 59 chr12 111644896 111645032 -32637457 + MIR SINE MIR 95 262 0 463 244 189 35 chr12 111645142 111645343 -32637146 + MIR SINE MIR 18 249 -13 329 188 0 14 chr12 111645556 111645625 -32636864 - MLT1A2 LTR MaLR -2 372 305 798 190 6 6 chr12 111645676 111645834 -32636655 - MLT1A2 LTR MaLR -216 158 1 390 240 197 29 chr12 111646234 111646414 -32636075 + MIR SINE MIR 18 226 -36 2011 146 0 0 chr12 111646506 111646808 -32635681 + AluSx SINE Alu 1 302 -10 2548 231 49 22 chr12 111647177 111648252 -32634237 - L1ME1 LINE L1 -16 6219 5033 2401 50 4 0 chr12 111648252 111648565 -32633924 - AluY SINE Alu 0 314 1 2548 231 49 22 chr12 111648565 111649415 -32633074 - L1ME1 LINE L1 -1202 5033 4207 3419 235 40 77 chr12 111649418 111651899 -32630590 - L1ME1 LINE L1 -2353 3862 1518 2115 135 0 3 chr12 111651899 111652210 -32630279 + AluY SINE Alu 1 310 -1 3419 235 40 77 chr12 111652210 111652568 -32629921 - L1ME1 LINE L1 -4697 1518 1148 41229 49 2 3 chr12 111652587 111653353 -32629136 - L1PA5 LINE L1 -4 6150 5385 2180 74 3 14 chr12 111653353 111653638 -32628851 - AluY SINE Alu -29 282 1 41229 49 2 3 chr12 111653638 111659032 -32623457 - L1PA5 LINE L1 -769 5385 1 1059 227 93 0 chr12 111659034 111659430 -32623059 - L1ME1 LINE L1 -5239 1157 725 283 364 36 29 chr12 111660028 111660168 -32622321 - MER5A DNA MER1_type 0 189 49 500 257 10 0 chr12 111660169 111660270 -32622219 + MER91A DNA MER1_type 50 151 -45 210 253 61 81 chr12 111660288 111660387 -32622102 + MER91A DNA MER1_type 90 186 -10 1000 257 111 17 chr12 111660388 111660804 -32621685 - LTR16B LTR ERVL -2 462 8 1974 115 52 25 chr12 111660812 111661177 -32621312 - THE1C LTR MaLR 0 375 1 191 269 21 86 chr12 111661186 111661279 -32621210 - MER5A DNA MER1_type -100 89 3 255 286 87 56 chr12 111662642 111662803 -32619686 - MIR SINE MIR -77 185 20 187 243 100 43 chr12 111663001 111663071 -32619418 + MIR SINE MIR 12 85 -177 2488 131 0 3 chr12 111663317 111663683 -32618806 + MLT1A1 LTR MaLR 1 365 0 533 221 25 9 chr12 111663834 111663971 -32618518 + MIR SINE MIR 42 181 -62 2546 103 19 6 chr12 111664000 111664359 -32618130 + THE1B LTR MaLR 1 364 0 208 328 0 16 chr12 111664713 111664774 -32617715 + L2 LINE L2 3206 3265 -7 343 326 36 66 chr12 111664921 111665219 -32617270 + L2 LINE L2 2816 3104 -168 384 349 39 26 chr12 111665219 111665448 -32617041 + MIR SINE MIR 4 235 -27 336 102 0 0 chr12 111665818 111665867 -32616622 + (CA)n Simple_repeat Simple_repeat 2 50 0 239 302 16 71 chr12 111665929 111666009 -32616480 + MIR SINE MIR 70 153 -109 2042 100 0 40 chr12 111666009 111666310 -32616179 + AluSc SINE Alu 1 289 -20 239 302 16 71 chr12 111666310 111666411 -32616078 + MIR SINE MIR 153 241 -21 2111 92 39 0 chr12 111666645 111666926 -32615563 + AluSx SINE Alu 1 292 -20 2684 142 9 2 chr12 111667400 111667831 -32614658 - MER57B LTR ERV1 0 434 1 859 213 88 25 chr12 111668214 111668453 -32614036 - LTR16C LTR ERVL -2 489 236 2013 166 45 57 chr12 111668458 111668969 -32613520 + MLT1D LTR MaLR 1 505 0 239 245 0 0 chr12 111669476 111669529 -32612960 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 217 267 180 23 chr12 111669566 111669738 -32612751 + MIR SINE MIR 8 206 -56 2249 100 10 10 chr12 111669852 111670152 -32612337 + AluSx SINE Alu 1 300 -12 5928 32 9 0 chr12 111670556 111671249 -32611240 - L1PA4 LINE L1 -2 6153 5455 1268 166 0 14 chr12 111671315 111671526 -32610963 + MER3 DNA MER1_type 2 209 0 334 320 107 7 chr12 111671534 111671684 -32610805 + MIR SINE MIR 10 174 -88 195 42 0 0 chr12 111671780 111671804 -32610685 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 392 297 168 5 chr12 111672189 111672398 -32610091 - MIR SINE MIR -7 255 13 307 214 84 61 chr12 111673070 111673201 -32609288 + L2 LINE L2 3180 3313 0 379 286 64 7 chr12 111673409 111673549 -32608940 + MIR SINE MIR 101 248 -14 225 111 0 0 chr12 111673552 111673588 -32608901 - MER96B DNA MER1_type? -23 152 117 * 385 140 263 18 chr12 111673561 111673619 -32608870 + MER96B DNA MER1_type? 37 79 -338 1942 210 68 5 chr12 111673619 111674058 -32608431 - MLT1C LTR MaLR 0 467 1 385 140 263 18 chr12 111674058 111674113 -32608376 + MER96B DNA MER1_type? 79 178 -239 810 208 45 49 chr12 111674310 111674575 -32607914 + MER90 LTR ERV1 1 264 -311 229 236 0 18 chr12 111674603 111674658 -32607831 + MER90 LTR ERV1 561 614 0 257 317 43 48 chr12 111674899 111675107 -32607382 + L2 LINE L2 3106 3312 -1 266 322 44 28 chr12 111675324 111675504 -32606985 - L2 LINE L2 -641 2673 2491 2044 183 56 50 chr12 111675634 111676136 -32606353 + MLT1D LTR MaLR 1 505 0 201 153 34 17 chr12 111677034 111677093 -32605396 + GA-rich Low_complexity Low_complexity 2 61 0 293 273 181 31 chr12 111677402 111677629 -32604860 - LTR41 LTR ERVL -8 765 505 306 213 19 74 chr12 111677889 111677997 -32604492 - LTR41 LTR ERVL -563 210 109 192 224 86 52 chr12 111678082 111678140 -32604349 + MIR3 SINE MIR 101 160 -48 263 250 23 23 chr12 111678283 111678371 -32604118 + ERVL LTR ERVL 4075 4162 -1602 2248 107 3 0 chr12 111678592 111678891 -32603598 + AluSx SINE Alu 1 300 -12 338 340 57 37 chr12 111679055 111679299 -32603190 + L1MC/D LINE L1 5538 5786 -2022 330 224 0 0 chr12 111679299 111679366 -32603123 - MLT1J2 LTR MaLR 0 450 384 2003 221 117 14 chr12 111679366 111679854 -32602635 + MER119 DNA MER1_type 5 542 -41 674 210 118 27 chr12 111679853 111680039 -32602450 - MLT1J2 LTR MaLR -45 405 203 * 2187 129 15 73 chr12 111680442 111680854 -32601635 - MLT1B LTR MaLR -2 388 1 1195 139 28 42 chr12 111681729 111681944 -32600545 + MER20 DNA MER1_type 2 213 -6 1623 145 42 35 chr12 111681963 111682252 -32600237 - AluJo SINE Alu -21 291 1 2175 109 3 7 chr12 111682796 111683089 -32599400 + AluSx SINE Alu 1 292 -20 618 276 27 50 chr12 111683989 111684250 -32598239 + MIR SINE MIR 5 259 -3 278 362 35 11 chr12 111684997 111685171 -32597318 + CT-rich Low_complexity Low_complexity 1 178 0 2112 140 14 75 chr12 111685737 111686150 -32596339 + MLT1B LTR MaLR 1 388 -2 478 291 33 29 chr12 111686391 111686601 -32595888 + L2 LINE L2 2629 2839 -475 220 313 71 10 chr12 111686895 111686994 -32595495 + L2 LINE L2 3168 3272 0 206 93 163 0 chr12 111687665 111687708 -32594781 - MIR SINE MIR -124 138 89 1148 224 138 60 chr12 111687777 111688276 -32594213 + MLT1H LTR MaLR 12 549 0 601 247 55 46 chr12 111688444 111688663 -32593826 - MIR SINE MIR -12 250 30 2212 123 0 0 chr12 111688816 111689124 -32593365 + AluSx SINE Alu 1 308 -4 1140 78 0 7 chr12 111689612 111689753 -32592736 - AluSq/x SINE Alu -171 142 3 771 129 30 8 chr12 111689964 111690096 -32592393 - LTR49 LTR ERV1 0 595 461 353 264 18 18 chr12 111690087 111690197 -32592292 - LTR48B LTR ERV1 -155 489 380 * 1207 117 0 0 chr12 111690197 111690351 -32592138 - AluSx SINE Alu -158 154 1 1074 185 43 5 chr12 111690387 111690598 -32591891 - MER20 DNA MER1_type 0 219 1 1169 86 0 0 chr12 111690821 111690960 -32591529 - AluSc SINE Alu -170 139 1 540 0 0 0 chr12 111691865 111691925 -32590564 + (TG)n Simple_repeat Simple_repeat 2 61 0 664 262 79 69 chr12 111692682 111693359 -32589130 - L1ME4a LINE L1 -3 6118 5447 2105 115 3 3 chr12 111693385 111693694 -32588795 - AluSx SINE Alu 0 309 1 520 165 21 0 chr12 111693695 111693792 -32588697 + MER53 DNA DNA 35 133 -56 * 638 151 55 27 chr12 111693788 111693934 -32588555 - MER53 DNA DNA -34 155 6 594 192 72 8 chr12 111694607 111694732 -32587757 - FLAM_A SINE Alu 0 133 1 2109 158 0 0 chr12 111694958 111695268 -32587221 + AluSx SINE Alu 1 310 -2 2094 141 0 3 chr12 111695590 111695888 -32586601 + AluJb SINE Alu 1 297 -15 777 237 53 18 chr12 111696325 111696553 -32585936 + MIR SINE MIR 6 241 -21 816 257 108 53 chr12 111697022 111697400 -32585089 - MLT1J LTR MaLR -82 429 31 1861 105 23 8 chr12 111697424 111697682 -32584807 - AluSq SINE Alu -13 300 39 2429 90 3 0 chr12 111698944 111699245 -32583244 - AluSp SINE Alu -11 302 1 702 252 69 20 chr12 111699973 111700219 -32582270 + MIR SINE MIR 5 262 0 305 257 164 29 chr12 111700762 111700902 -32581587 + MIR SINE MIR 83 241 -21 253 216 108 39 chr12 111700903 111701005 -32581484 + MLT1I LTR MaLR 2 110 -299 703 199 133 24 chr12 111701009 111701175 -32581314 + MLT1I LTR MaLR 214 397 -12 203 278 143 32 chr12 111701307 111701433 -32581056 + MIR SINE MIR 51 190 -72 211 132 26 0 chr12 111702709 111702747 -32579742 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 346 293 10 0 chr12 111702958 111703057 -32579432 + CT-rich Low_complexity Low_complexity 2 101 0 293 363 55 0 chr12 111703061 111703207 -32579282 - L2 LINE L2 0 3272 3119 2395 97 0 0 chr12 111703916 111704224 -32578265 - AluSc SINE Alu -1 308 1 212 296 113 26 chr12 111704743 111704858 -32577631 - L2 LINE L2 0 3272 3148 363 303 91 17 chr12 111704871 111705046 -32577443 - MIR SINE MIR -18 244 57 410 323 219 9 chr12 111706331 111707312 -32575177 - L2 LINE L2 -23 3249 2037 356 296 148 32 chr12 111708507 111708791 -32573698 + L2 LINE L2 2282 2598 -716 2690 160 5 0 chr12 111708816 111709265 -32573224 - L1MC3 LINE L1 -1910 5875 5425 456 272 53 0 chr12 111709412 111709526 -32572963 - MIR SINE MIR -134 128 9 1810 238 72 52 chr12 111709591 111710294 -32572195 - L1MEd LINE L1 -4863 1256 535 1753 139 78 33 chr12 111710294 111710653 -32571836 + THE1C LTR MaLR 1 375 0 1810 238 72 52 chr12 111710653 111710717 -32571772 - L1MEd LINE L1 -5584 535 474 1783 183 0 10 chr12 111711128 111711423 -32571066 - AluJb SINE Alu -20 292 1 427 317 85 18 chr12 111711788 111712012 -32570477 + MIR SINE MIR 21 259 -3 413 241 28 0 chr12 111712175 111712283 -32570206 + MARNA DNA Mariner 356 466 -120 37 23 0 0 chr12 111713028 111713072 -32569417 + AT_rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr12 111713133 111713165 -32569324 + AT_rich Low_complexity Low_complexity 1 32 0 40 108 0 0 chr12 111713279 111713445 -32569044 + AT_rich Low_complexity Low_complexity 1 166 0 2225 134 0 3 chr12 111714155 111714468 -32568021 - AluSx SINE Alu 0 312 1 649 299 70 0 chr12 111714651 111714852 -32567637 - MER58A DNA MER1_type 0 224 10 489 272 51 30 chr12 111714894 111715097 -32567392 - L1MEc LINE L1 -3791 2386 2167 190 240 80 120 chr12 111716563 111716738 -32565751 + MER5B DNA MER1_type 6 173 -5 729 189 120 40 chr12 111716843 111717018 -32565471 + MER5A DNA MER1_type 1 189 0 202 257 248 0 chr12 111717828 111717933 -32564556 - L2 LINE L2 -1 3271 3141 261 159 0 0 chr12 111717938 111718001 -32564488 + CT-rich Low_complexity Low_complexity 2 64 0 324 0 0 0 chr12 111718001 111718037 -32564452 + (CA)n Simple_repeat Simple_repeat 2 37 0 95 79 0 0 chr12 111718253 111718467 -32564022 + GC_rich Low_complexity Low_complexity 1 214 0 21 36 0 0 chr12 111718975 111719003 -32563486 + GC_rich Low_complexity Low_complexity 1 28 0 328 378 68 37 chr12 111719374 111719784 -32562705 - L3 LINE CR1 -509 1068 646 40 59 0 0 chr12 111719898 111719966 -32562523 + GC_rich Low_complexity Low_complexity 1 68 0 5895 158 39 25 chr12 111720595 111721694 -32560795 - L1P LINE L1 -4973 1173 60 511 176 0 14 chr12 111721915 111722057 -32560432 + GA-rich Low_complexity Low_complexity 2 141 0 1116 124 0 0 chr12 111722327 111722394 -32560095 + (GGAA)n Simple_repeat Simple_repeat 1 245 0 1116 124 0 0 chr12 111722394 111722572 -32559917 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 237 132 0 0 chr12 111723086 111723124 -32559365 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 237 380 83 0 chr12 111723165 111723286 -32559203 + MIR3 SINE MIR 53 183 -25 2078 123 4 0 chr12 111723477 111723754 -32558735 + AluSx SINE Alu 2 279 -33 619 211 13 0 chr12 111723755 111723911 -32558578 + GA-rich Low_complexity Low_complexity 1 158 0 337 224 69 9 chr12 111725009 111725125 -32557364 + MER20B DNA MER1_type 538 660 -123 477 170 0 50 chr12 111725365 111725465 -32557024 - MIR3 SINE MIR -13 195 101 2935 6 0 0 chr12 111725557 111725868 -32556621 - AluYa5 SINE Alu 0 311 1 360 254 98 16 chr12 111726356 111726478 -32556011 - L2 LINE L2 -6 3307 3176 308 230 206 43 chr12 111726987 111727196 -32555293 + MIR SINE MIR 8 250 -12 1555 188 82 0 chr12 111727274 111727556 -32554933 + AluJb SINE Alu 2 306 -6 233 116 0 23 chr12 111728139 111728182 -32554307 + (TAA)n Simple_repeat Simple_repeat 2 43 0 661 186 27 22 chr12 111728272 111728427 -32554062 - MIR SINE MIR -57 151 46 664 260 31 63 chr12 111729054 111729308 -32553181 - MIR SINE MIR 0 262 17 981 248 97 42 chr12 111729364 111729819 -32552670 + L2 LINE L2 2326 2805 -509 230 338 13 26 chr12 111729845 111729996 -32552493 + L2 LINE L2 2869 3017 -296 654 287 91 63 chr12 111730006 111730435 -32552054 + MLT1J2 LTR MaLR 2 442 -8 451 321 43 16 chr12 111730493 111730680 -32551809 + L2 LINE L2 3122 3313 0 838 294 44 23 chr12 111730743 111731131 -32551358 + L2 LINE L2 2913 3308 -5 1031 135 11 0 chr12 111731175 111731353 -32551136 + GA-rich Low_complexity Low_complexity 1 180 0 330 132 0 0 chr12 111731353 111731406 -32551083 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 205 261 0 72 chr12 111731453 111731522 -32550967 + polypyrimidine Low_complexity Low_complexity 2 65 0 510 283 60 30 chr12 111731661 111731997 -32550492 - L1MCa LINE L1 -5124 1817 1472 1717 97 8 13 chr12 111731998 111732235 -32550254 - AluSq SINE Alu -6 307 72 314 244 61 9 chr12 111732268 111732383 -32550106 - L1MCa LINE L1 -4946 1477 1357 415 321 25 6 chr12 111732697 111732856 -32549633 + MIR SINE MIR 24 185 -77 832 179 151 6 chr12 111734906 111735085 -32547404 + MER20 DNA MER1_type 1 205 -14 499 261 41 51 chr12 111735116 111735311 -32547178 - MIR SINE MIR -46 216 24 507 275 144 0 chr12 111735331 111735491 -32546998 + MER5A DNA MER1_type 7 189 0 1302 283 87 40 chr12 111736009 111736560 -32545929 - MLT1K LTR MaLR 0 588 12 224 241 12 96 chr12 111737657 111737740 -32544749 - MIR3 SINE MIR 0 208 133 2506 63 0 13 chr12 111738735 111739035 -32543454 + AluY SINE Alu 1 296 -15 766 163 32 0 chr12 111739207 111739330 -32543159 + FLAM_A SINE Alu 1 127 -6 1036 207 8 16 chr12 111739848 111740094 -32542395 + L1MB7 LINE L1 5938 6181 -3 808 273 127 50 chr12 111740482 111741019 -32541470 - L2 LINE L2 -19 3294 2705 1535 180 18 21 chr12 111741019 111741302 -32541187 - AluJo SINE Alu -30 282 1 808 273 127 50 chr12 111741302 111741375 -32541114 - L2 LINE L2 -608 2705 2639 2052 94 32 14 chr12 111741464 111741779 -32540710 - AluY SINE Alu 0 320 1 190 318 48 0 chr12 111741901 111741964 -32540525 - L2 LINE L2 -18 3254 3189 291 164 0 0 chr12 111742295 111742356 -32540133 + C-rich Low_complexity Low_complexity 1 61 0 832 203 0 0 chr12 111743383 111743521 -32538968 - FRAM SINE Alu -30 146 9 1659 114 36 85 chr12 111743538 111743844 -32538645 - AluSx SINE Alu -13 299 9 22 35 0 0 chr12 111743975 111744004 -32538485 + AT_rich Low_complexity Low_complexity 1 29 0 1955 123 43 0 chr12 111744004 111744280 -32538209 - AluSx SINE Alu -24 288 1 462 271 26 2 chr12 111744280 111744420 -32538069 + L1ME1 LINE L1 5578 5689 -477 1469 213 102 31 chr12 111744442 111744987 -32537502 - LTR24B LTR ERV1 -7 569 1 1068 198 59 29 chr12 111744987 111745260 -32537229 + L1ME1 LINE L1 5720 6000 -166 756 157 85 0 chr12 111745265 111745418 -32537071 + L1MA10 LINE L1 6167 6332 -2 1364 88 0 0 chr12 111745481 111745651 -32536838 - AluSx SINE Alu -16 296 127 435 126 57 0 chr12 111745654 111745813 -32536676 + (TA)n Simple_repeat Simple_repeat 1 168 0 863 92 0 85 chr12 111745813 111745954 -32536535 - AluSx SINE Alu -183 129 1 452 134 0 0 chr12 111747110 111747177 -32535312 + MSTB1 LTR MaLR 353 419 -13 481 301 136 43 chr12 111747188 111747775 -32534714 + L2 LINE L2 2664 3311 -2 22 0 0 0 chr12 111747805 111747827 -32534662 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr12 111748039 111748081 -32534408 + AT_rich Low_complexity Low_complexity 1 42 0 1656 182 22 0 chr12 111748081 111748356 -32534133 - AluJo SINE Alu -31 281 1 2085 130 0 7 chr12 111748377 111748678 -32533811 - AluSx SINE Alu -13 299 1 246 256 120 29 chr12 111748689 111748855 -32533634 - MIR3 SINE MIR -66 196 15 2299 153 87 2 chr12 111749036 111749429 -32533060 + MSTB LTR MaLR 1 426 0 376 256 159 0 chr12 111749496 111749672 -32532817 - L1MC4a LINE L1 -1904 5904 5701 1271 275 99 15 chr12 111750352 111750908 -32531581 + L2 LINE L2 2433 3036 -277 4089 144 41 14 chr12 111750913 111751619 -32530870 + L1MB8 LINE L1 5372 6096 -82 21 36 0 0 chr12 111751686 111751714 -32530775 + AT_rich Low_complexity Low_complexity 1 28 0 482 223 70 61 chr12 111752537 111752864 -32529625 + L1MCa LINE L1 1204 1533 -5007 836 161 7 0 chr12 111752950 111753087 -32529402 - FLAM_C SINE Alu 0 143 6 651 215 20 3 chr12 111753096 111753266 -32529223 + L1MCa LINE L1 1843 2052 -4532 2209 119 0 0 chr12 111753268 111753561 -32528928 + AluSg SINE Alu 1 293 -17 1121 255 51 19 chr12 111753571 111754003 -32528486 + L1MCa LINE L1 2372 2817 -3904 800 218 67 40 chr12 111754067 111754292 -32528197 + L1ME1 LINE L1 5931 6161 -5 1327 102 0 17 chr12 111754464 111754641 -32527848 + AluSg/x SINE Alu 119 292 -18 767 185 5 54 chr12 111754714 111754918 -32527571 + AluJo SINE Alu 121 312 0 447 230 69 29 chr12 111754981 111755155 -32527334 + MER113 DNA MER1_type? 340 520 -1 2273 80 7 30 chr12 111755418 111755719 -32526770 - AluSg SINE Alu -16 294 1 1248 172 0 5 chr12 111756086 111756295 -32526194 + AluSg/x SINE Alu 89 296 -16 455 308 72 14 chr12 111756317 111756538 -32525951 + L1ME4a LINE L1 5536 5769 -352 343 229 182 37 chr12 111756544 111756715 -32525774 + L1ME4a LINE L1 5850 6059 -62 1882 85 62 88 chr12 111756715 111757021 -32525468 - AluSx SINE Alu -12 300 3 343 229 182 37 chr12 111757021 111757063 -32525426 + L1ME4a LINE L1 6059 6094 -27 198 276 118 13 chr12 111757179 111757255 -32525234 + MIR SINE MIR 64 147 -61 477 299 72 14 chr12 111757273 111757480 -32525009 + L1MC/D LINE L1 5541 5759 -2049 234 238 0 0 chr12 111757576 111757618 -32524871 + (CA)n Simple_repeat Simple_repeat 2 43 0 2139 112 13 23 chr12 111757713 111758018 -32524471 - AluSx SINE Alu -10 302 1 330 261 28 47 chr12 111759331 111759515 -32522974 - L1M4 LINE L1 -1155 4991 4810 2183 133 0 16 chr12 111759515 111759832 -32522657 - AluSx SINE Alu 0 312 1 330 261 28 47 chr12 111759832 111759858 -32522631 - L1M4 LINE L1 -1336 4810 4785 344 246 42 84 chr12 111759869 111760011 -32522478 + LTR67 LTR ERVL 4 139 -418 2463 181 109 10 chr12 111760011 111760497 -32521992 + MLT1F LTR MaLR 1 534 -8 367 263 82 35 chr12 111760522 111760754 -32521735 - L1M4 LINE L1 -1650 4496 4254 581 171 200 7 chr12 111761128 111761268 -32521221 - L1ME1 LINE L1 0 6166 6000 787 121 57 0 chr12 111761341 111761465 -32521024 + AluJ SINE Alu 1 131 -171 2095 116 27 7 chr12 111761500 111761801 -32520688 - AluSx SINE Alu -5 307 1 923 189 6 6 chr12 111761817 111761976 -32520513 + AluJ SINE Alu 131 289 -23 37 0 0 0 chr12 111761976 111762013 -32520476 + AT_rich Low_complexity Low_complexity 1 37 0 372 309 36 0 chr12 111762024 111762134 -32520355 + L2 LINE L2 3200 3313 0 2352 86 0 3 chr12 111762653 111762954 -32519535 - AluSq SINE Alu -13 300 1 430 147 0 27 chr12 111767692 111767767 -32514722 - MLT1I LTR MaLR -2 407 335 * 1024 202 79 0 chr12 111767758 111767961 -32514528 + MER58A DNA MER1_type 6 224 0 548 290 59 65 chr12 111767974 111768281 -32514208 - MLT1I LTR MaLR -104 305 1 185 328 62 16 chr12 111769041 111769105 -32513384 + MIR3 SINE MIR 90 156 -52 2383 96 3 0 chr12 111769384 111769687 -32512802 - AluSp SINE Alu -9 304 1 189 294 118 0 chr12 111770797 111770865 -32511624 + L2 LINE L2 2182 2257 -1057 244 191 0 0 chr12 111770866 111770908 -32511581 - MER58B DNA MER1_type 0 341 300 529 181 110 16 chr12 111770937 111771046 -32511443 - MER58B DNA MER1_type -2103 317 193 1567 154 81 32 chr12 111771046 111771331 -32511158 + AluJb SINE Alu 1 299 -13 529 181 110 16 chr12 111771331 111771348 -32511141 - MER58B DNA MER1_type -2227 193 179 252 368 26 9 chr12 111771390 111771504 -32510985 + L2 LINE L2 2251 2366 -948 267 105 0 0 chr12 111771712 111771745 -32510744 + Alu SINE Alu 1 33 -266 753 227 130 11 chr12 111771745 111771930 -32510559 + MER3 DNA MER1_type 3 209 0 291 191 0 0 chr12 111771890 111771937 -32510552 - MER3 DNA MER1_type -122 87 41 * 2361 79 3 13 chr12 111772572 111772875 -32509614 + AluSx SINE Alu 1 300 -12 181 175 12 38 chr12 111773050 111773130 -32509359 + GA-rich Low_complexity Low_complexity 1 78 0 1662 184 13 17 chr12 111773785 111774084 -32508405 - AluJo SINE Alu -9 303 6 707 232 106 24 chr12 111774609 111774855 -32507634 + Charlie4a DNA MER1_type 239 504 -4 1154 137 100 37 chr12 111775322 111775593 -32506896 - MER33 DNA MER1_type -4 320 33 242 209 209 0 chr12 111775561 111775628 -32506861 - MER3 DNA MER1_type -97 112 32 * 185 266 16 31 chr12 111777616 111777680 -32504809 + MIR SINE MIR 94 156 -106 23 33 0 0 chr12 111778114 111778144 -32504345 + AT_rich Low_complexity Low_complexity 1 30 0 2213 107 3 0 chr12 111779243 111779541 -32502948 - AluSg SINE Alu -11 299 1 733 188 88 53 chr12 111779852 111780022 -32502467 + FAM SINE Alu 1 40 -9 805 163 8 0 chr12 111780491 111780614 -32501875 + AluJ SINE Alu 1 124 -188 1246 179 0 0 chr12 111780632 111780839 -32501650 + MER2 DNA MER2_type 1 207 -138 904 211 35 0 chr12 111780927 111781098 -32501391 + MER8 DNA MER2_type 1 177 -62 231 138 224 17 chr12 111781125 111781183 -32501306 - Tigger2 DNA MER2_type -2645 73 4 267 306 0 0 chr12 111782002 111782110 -32500379 + GA-rich Low_complexity Low_complexity 1 108 0 1892 87 8 8 chr12 111782729 111782982 -32499507 - AluSg1 SINE Alu -18 291 39 533 233 10 10 chr12 111782996 111783099 -32499390 + AluJ SINE Alu 120 222 -90 400 287 37 0 chr12 111783154 111783262 -32499227 + MLT1F1 LTR MaLR 14 125 -442 1202 161 220 50 chr12 111783262 111783640 -32498849 + L1MD3 LINE L1 7404 7845 -150 1076 103 45 0 chr12 111783643 111783798 -32498691 - AluSx SINE Alu -21 291 130 435 126 57 0 chr12 111783803 111783962 -32498527 + (TA)n Simple_repeat Simple_repeat 1 168 0 851 92 0 85 chr12 111783962 111784103 -32498386 - AluSx SINE Alu -183 129 1 454 134 0 0 chr12 111785259 111785326 -32497163 + MSTB1 LTR MaLR 353 419 -13 598 301 136 43 chr12 111785337 111785924 -32496565 + L2 LINE L2 2664 3311 -2 22 0 0 0 chr12 111785954 111785976 -32496513 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr12 111786188 111786230 -32496259 + AT_rich Low_complexity Low_complexity 1 42 0 1642 182 22 0 chr12 111786230 111786505 -32495984 - AluJo SINE Alu -31 281 1 2069 130 0 7 chr12 111786526 111786827 -32495662 - AluSx SINE Alu -13 299 1 283 256 120 29 chr12 111786838 111787004 -32495485 - MIR3 SINE MIR -66 196 15 2444 153 87 2 chr12 111787185 111787578 -32494911 + MSTB LTR MaLR 1 426 0 397 256 159 0 chr12 111787645 111787821 -32494668 - L1MC4a LINE L1 -1904 5904 5701 1424 274 99 15 chr12 111788501 111789057 -32493432 + L2 LINE L2 2433 3036 -277 4123 144 41 14 chr12 111789062 111789768 -32492721 + L1MB8 LINE L1 5372 6096 -82 180 219 293 12 chr12 111789776 111789858 -32492631 + L2 LINE L2 3209 3313 0 188 273 61 15 chr12 111789860 111789926 -32492563 + L2 LINE L2 3204 3272 0 889 286 102 9 chr12 111791291 111791623 -32490866 + LTR16A LTR ERVL 88 450 0 1354 178 189 59 chr12 111792483 111792626 -32489863 - L1MD3 LINE L1 0 7995 7872 1984 108 47 0 chr12 111792626 111792904 -32489585 + AluSx SINE Alu 1 291 -21 1354 178 189 59 chr12 111792904 111793284 -32489205 - L1MD3 LINE L1 -123 7872 7404 372 284 37 9 chr12 111793284 111793393 -32489096 - MLT1F1 LTR MaLR -442 125 14 492 252 10 10 chr12 111793448 111793551 -32488938 - AluJo SINE Alu -90 222 120 1951 81 8 8 chr12 111793565 111793823 -32488666 + AluSg1 SINE Alu 39 296 -13 267 306 0 0 chr12 111794436 111794544 -32487945 + CT-rich Low_complexity Low_complexity 1 108 0 225 136 220 34 chr12 111795364 111795423 -32487066 + Tigger2 DNA MER2_type 4 73 -2645 904 211 35 0 chr12 111795450 111795621 -32486868 - MER8 DNA MER2_type -62 177 1 380 105 0 0 chr12 111795709 111795766 -32486723 - MER2 DNA MER2_type -138 207 151 3396 172 26 3 chr12 111795886 111796490 -32485999 - L1P LINE L1 -5518 628 11 342 80 0 0 chr12 111796629 111796679 -32485810 - L1MA9 LINE L1 0 6312 6263 766 247 47 0 chr12 111796680 111796830 -32485659 + FRAM SINE Alu 1 156 -20 306 194 0 0 chr12 111796830 111796892 -32485597 + (CATA)n Simple_repeat Simple_repeat 3 64 0 5596 126 22 48 chr12 111796892 111797482 -32485007 - L1MA9 LINE L1 -40 6272 5719 2220 106 0 17 chr12 111797482 111797784 -32484705 + AluSx SINE Alu 1 297 -15 5596 126 22 48 chr12 111797784 111798204 -32484285 - L1MA9 LINE L1 -593 5719 5289 22 70 0 0 chr12 111798528 111798571 -32483918 + AT_rich Low_complexity Low_complexity 1 43 0 3884 151 28 82 chr12 111799933 111800788 -32481701 - L1MA9 LINE L1 -812 5334 4526 273 297 148 4 chr12 111800815 111800950 -32481539 - MIR3 SINE MIR -5 203 52 259 184 13 105 chr12 111800948 111801024 -32481465 - MIR SINE MIR -28 234 166 * 778 236 177 49 chr12 111801044 111801365 -32481124 - L1MC4 LINE L1 0 8042 7764 2354 90 0 0 chr12 111801365 111801654 -32480835 - AluSc SINE Alu -20 289 1 778 236 177 49 chr12 111801654 111802030 -32480459 - L1MC4 LINE L1 -278 7764 7168 266 257 105 41 chr12 111802038 111802170 -32480319 - MIR SINE MIR -65 143 2 234 91 0 0 chr12 111802352 111802385 -32480104 + (CA)n Simple_repeat Simple_repeat 2 34 0 746 270 73 4 chr12 111802817 111803050 -32479439 + MIR SINE MIR 14 262 0 308 282 17 17 chr12 111803110 111803227 -32479262 - MLT1K LTR MaLR -2 586 470 2087 133 0 0 chr12 111804367 111804661 -32477828 - AluSx SINE Alu -12 300 7 1190 230 57 16 chr12 111804678 111804995 -32477494 + L1ME1 LINE L1 5254 5583 -583 1123 160 6 0 chr12 111804995 111805176 -32477313 - AluJb SINE Alu -2 310 129 811 186 0 21 chr12 111805210 111805355 -32477134 - FLAM_C SINE Alu 0 143 2 2559 200 47 11 chr12 111805357 111805912 -32476577 + L1ME1 LINE L1 5574 6148 -18 1251 82 13 0 chr12 111806153 111806311 -32476178 - L1PA10 LINE L1 -4 6164 6005 402 74 0 0 chr12 111806652 111806706 -32475783 + (TG)n Simple_repeat Simple_repeat 2 55 0 1494 33 0 0 chr12 111807335 111807406 -32475083 + (TTC)n Simple_repeat Simple_repeat 1 251 0 1494 33 0 0 chr12 111807406 111807586 -32474903 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1544 126 88 39 chr12 111807654 111807939 -32474550 - AluJo SINE Alu -11 301 3 1212 279 59 11 chr12 111808501 111809022 -32473467 + L2 LINE L2 2761 3311 -2 1901 169 0 7 chr12 111809234 111809536 -32472953 + AluSx SINE Alu 1 300 -12 2206 122 0 0 chr12 111810028 111810340 -32472149 + AluJb SINE Alu 1 312 0 437 189 71 55 chr12 111810404 111810531 -32471958 + MER69 DNA AcHobo 2398 2526 0 791 99 0 41 chr12 111810599 111810720 -32471769 + MER53 DNA DNA 1 116 -73 1108 92 7 0 chr12 111810720 111810862 -32471627 - AluSq/x SINE Alu -170 143 1 22 0 0 0 chr12 111811158 111811180 -32471309 + AT_rich Low_complexity Low_complexity 1 22 0 1996 149 0 10 chr12 111811182 111811490 -32470999 + AluJb SINE Alu 1 305 -7 436 296 76 23 chr12 111811537 111811709 -32470780 - MIR SINE MIR -62 200 20 232 278 29 73 chr12 111811762 111811831 -32470658 + MER113 DNA MER1_type? 28 99 -422 2255 108 0 0 chr12 111811831 111812118 -32470371 + AluSq SINE Alu 1 287 -26 232 278 29 73 chr12 111812118 111812293 -32470196 + MER113 DNA MER1_type? 99 261 -260 317 280 68 8 chr12 111812306 111812424 -32470065 + MER113 DNA MER1_type? 397 521 0 2093 140 16 0 chr12 111812530 111812568 -32469921 - AluSx SINE Alu 0 574 538 1319 67 6 0 chr12 111812568 111812747 -32469742 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2093 140 16 0 chr12 111812747 111813099 -32469390 - AluSx SINE Alu -36 538 1 1798 137 6 61 chr12 111813192 111813443 -32469046 + L1 LINE L1 3975 4238 -1908 180 0 0 0 chr12 111813443 111813463 -32469026 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1801 133 46 4 chr12 111813471 111813734 -32468755 - AluSx SINE Alu -38 274 1 1798 137 6 61 chr12 111813734 111813816 -32468673 + L1 LINE L1 4245 4298 -1848 1682 154 58 3 chr12 111813847 111814015 -32468474 - AluJb SINE Alu -3 309 117 390 21 0 0 chr12 111814015 111814062 -32468427 + (TG)n Simple_repeat Simple_repeat 2 48 0 1682 154 58 3 chr12 111814062 111814186 -32468303 - AluJb SINE Alu -195 117 1 712 253 24 0 chr12 111814614 111814784 -32467705 - MER5A DNA MER1_type 0 189 16 1626 181 35 0 chr12 111815087 111815369 -32467120 - AluJb SINE Alu -20 292 1 1438 167 22 29 chr12 111815413 111815688 -32466801 + AluJo SINE Alu 6 278 -34 269 243 114 0 chr12 111815745 111815815 -32466674 - L2 LINE L2 -41 3272 3195 30 45 0 0 chr12 111815823 111815867 -32466622 + AT_rich Low_complexity Low_complexity 1 44 0 1880 214 60 16 chr12 111815913 111816373 -32466116 + L1MB7 LINE L1 5669 6152 -32 1889 181 22 57 chr12 111816373 111816777 -32465712 - MLT1B LTR MaLR 0 390 1 1880 214 60 16 chr12 111816777 111816801 -32465688 + L1MB7 LINE L1 6152 6174 -10 207 0 0 0 chr12 111817239 111817262 -32465227 + (TA)n Simple_repeat Simple_repeat 2 24 0 2285 97 10 0 chr12 111817262 111817561 -32464928 - AluSp SINE Alu -11 302 1 24 53 0 0 chr12 111817724 111817762 -32464727 + AT_rich Low_complexity Low_complexity 1 38 0 230 250 0 25 chr12 111818628 111818737 -32463752 - L2 LINE L2 0 3272 3125 719 316 110 57 chr12 111818803 111819312 -32463177 - L2 LINE L2 -22 3250 2719 249 208 65 69 chr12 111819420 111819455 -32463034 - L1ME4a LINE L1 0 6121 6087 2592 99 17 8 chr12 111819455 111819807 -32462682 - THE1A LTR MaLR 0 355 1 12636 82 8 4 chr12 111819807 111821382 -32461107 - THE1A-int LTR MaLR 0 1580 1 2620 96 14 8 chr12 111821382 111821735 -32460754 - THE1A LTR MaLR 0 355 1 249 208 65 69 chr12 111821735 111821952 -32460537 - L1ME4a LINE L1 -31 6090 5810 321 141 13 26 chr12 111822140 111822218 -32460271 + GA-rich Low_complexity Low_complexity 1 77 0 567 229 63 74 chr12 111822651 111822971 -32459518 - LTR45 LTR ERV1 0 578 293 213 39 0 0 chr12 111823054 111823080 -32459409 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 14375 48 0 1 chr12 111823080 111825508 -32456981 - L1PA5 LINE L1 -16 6138 3706 1367 272 97 5 chr12 111825628 111826051 -32456438 - MLT1J LTR MaLR -49 462 1 438 237 0 0 chr12 111826363 111826481 -32456008 + CT-rich Low_complexity Low_complexity 2 119 0 1627 195 3 13 chr12 111826484 111826792 -32455697 - AluJo SINE Alu -7 305 1 437 226 129 40 chr12 111826944 111827192 -32455297 + L1MC4a LINE L1 5126 5395 -751 1401 177 67 18 chr12 111827195 111827477 -32455012 + AluJo SINE Alu 1 296 -16 1515 154 0 0 chr12 111827512 111827732 -32454757 + AluSx SINE Alu 63 282 -30 204 0 83 0 chr12 111827735 111827771 -32454718 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 635 295 83 55 chr12 111827824 111828409 -32454080 + L1MC4a LINE L1 5415 5786 -384 350 248 38 29 chr12 111828908 111829013 -32453476 - L1ME3A LINE L1 0 6170 6065 342 276 151 20 chr12 111829011 111829210 -32453279 - L1ME3A LINE L1 -650 5512 5288 * 1841 142 0 68 chr12 111830607 111830746 -32451743 + AluJo SINE Alu 1 148 -164 2282 103 0 0 chr12 111830746 111831037 -32451452 + AluSg SINE Alu 1 291 -19 1841 142 0 68 chr12 111831037 111831222 -32451267 + AluJo SINE Alu 148 303 -9 378 0 0 0 chr12 111831497 111831539 -32450950 + (TG)n Simple_repeat Simple_repeat 2 43 0 354 307 142 9 chr12 111832848 111833066 -32449423 + MIR SINE MIR 14 260 -2 680 283 43 5 chr12 111833372 111833556 -32448933 + MIR SINE MIR 18 208 -54 285 215 31 0 chr12 111833563 111833628 -32448861 + MIR SINE MIR 178 244 -18 1997 262 149 26 chr12 111833733 111834862 -32447627 - L2 LINE L2 -3 3310 2039 25 0 0 0 chr12 111835487 111835512 -32446977 + AT_rich Low_complexity Low_complexity 1 25 0 276 188 104 10 chr12 111835716 111835812 -32446677 + L1MC4 LINE L1 7938 8042 0 2240 114 3 0 chr12 111836105 111836404 -32446085 - AluSx SINE Alu -12 300 1 221 297 149 14 chr12 111836493 111836641 -32445848 + MIR SINE MIR 85 252 -10 231 156 0 0 chr12 111836758 111836803 -32445686 + Alu SINE Alu 259 303 0 215 265 0 0 chr12 111837080 111837129 -32445360 + MIR SINE MIR 195 243 -19 383 214 12 12 chr12 111837148 111837232 -32445257 - MER46C DNA MER2_type -5 333 250 260 219 146 37 chr12 111837244 111837326 -32445163 - MER46C DNA MER2_type -237 101 11 201 277 30 89 chr12 111837330 111837431 -32445058 - MIR SINE MIR -7 255 161 198 0 0 0 chr12 111837447 111837469 -32445020 + (T)n Simple_repeat Simple_repeat 1 22 0 2138 139 0 3 chr12 111837805 111838107 -32444382 + AluSx SINE Alu 1 301 -11 452 302 113 55 chr12 111838495 111838965 -32443524 + MARNA DNA Mariner 74 570 -16 529 271 121 76 chr12 111838965 111839158 -32443331 + L1MC4 LINE L1 5479 5610 -554 507 60 0 0 chr12 111839158 111839225 -32443264 + (TA)n Simple_repeat Simple_repeat 2 68 0 529 271 121 76 chr12 111839225 111839420 -32443069 + L1MC4 LINE L1 5610 5795 -369 904 239 5 50 chr12 111842390 111842612 -32439877 - AluJo SINE Alu -16 296 85 293 211 0 0 chr12 111842612 111842664 -32439825 - AluSp/q SINE Alu -53 250 199 2338 91 0 7 chr12 111842923 111843231 -32439258 + AluY SINE Alu 1 306 -5 420 20 0 0 chr12 111843934 111843983 -32438506 + (TG)n Simple_repeat Simple_repeat 2 50 0 252 333 0 0 chr12 111844002 111844092 -32438397 + L1MC4 LINE L1 6614 6703 -1339 248 253 0 63 chr12 111844063 111844158 -32438331 + L1MC4 LINE L1 6615 6703 -1339 * 1714 79 5 5 chr12 111844617 111844833 -32437656 - AluSx SINE Alu -96 216 1 2047 131 7 0 chr12 111846368 111846658 -32435831 - AluJb SINE Alu -18 294 3 237 268 216 0 chr12 111846658 111846755 -32435734 - MIR SINE MIR -73 189 72 1719 196 3 16 chr12 111847101 111847417 -32435072 - AluJb SINE Alu 0 312 1 2484 81 3 0 chr12 111847610 111847918 -32434571 + AluSp SINE Alu 1 309 -4 567 267 102 29 chr12 111848717 111848923 -32433566 - MIR SINE MIR -37 225 5 23 68 0 0 chr12 111849624 111849668 -32432821 + AT_rich Low_complexity Low_complexity 1 44 0 2327 113 3 3 chr12 111849741 111850052 -32432437 + AluSx SINE Alu 1 311 -1 1297 185 24 5 chr12 111850207 111850418 -32432071 - MER20 DNA MER1_type -4 215 1 361 339 67 85 chr12 111850764 111851055 -32431434 + L2 LINE L2 2370 2665 -607 1914 127 36 26 chr12 111851055 111851363 -32431126 - AluSx SINE Alu -1 311 1 361 339 67 85 chr12 111851363 111851986 -32430503 + L2 LINE L2 2665 3258 -14 252 0 0 0 chr12 111852713 111852741 -32429748 + (TG)n Simple_repeat Simple_repeat 1 28 0 1564 172 11 21 chr12 111852743 111853028 -32429461 - AluJb SINE Alu -30 282 1 630 89 33 0 chr12 111853095 111853185 -32429304 + MSTD LTR MaLR 1 93 -303 1519 196 0 14 chr12 111853188 111853500 -32428989 + AluJo SINE Alu 1 308 0 340 186 0 0 chr12 111853514 111853573 -32428916 + L1MB8 LINE L1 6116 6174 -4 2015 129 3 3 chr12 111854387 111854696 -32427793 + AluSx SINE Alu 1 309 0 693 261 164 51 chr12 111854701 111855092 -32427397 + L1ME4a LINE L1 5427 5861 -260 1797 175 0 0 chr12 111855837 111856128 -32426361 + AluSx SINE Alu 7 297 -15 1128 221 49 46 chr12 111856129 111856436 -32426053 + MSTD LTR MaLR 89 396 0 2570 57 0 16 chr12 111856788 111857103 -32425386 - AluY SINE Alu 0 311 2 1523 200 0 14 chr12 111857212 111857521 -32424968 + AluJo SINE Alu 1 305 0 340 186 0 0 chr12 111857535 111857594 -32424895 + L1MB8 LINE L1 6116 6174 -4 2297 97 3 3 chr12 111858408 111858706 -32423783 + AluSp SINE Alu 1 298 -15 2129 118 0 0 chr12 111859376 111859665 -32422824 + AluSg SINE Alu 1 289 -21 241 261 29 14 chr12 111859864 111859933 -32422556 + MIR3 SINE MIR 99 168 -40 2139 118 20 3 chr12 111860206 111860511 -32421978 - AluSg SINE Alu 0 310 1 1452 210 74 7 chr12 111860615 111860925 -32421564 + MER2 DNA MER2_type 14 344 -1 1211 119 0 31 chr12 111861013 111861207 -32421282 - AluJo SINE Alu -2 310 123 1831 166 7 7 chr12 111861301 111861596 -32420893 - AluJo SINE Alu -17 295 1 735 326 181 19 chr12 111861913 111862449 -32420040 - L3 LINE CR1 -483 1094 472 833 241 76 34 chr12 111862453 111862689 -32419800 + MIR SINE MIR 2 247 -15 1207 87 7 0 chr12 111862795 111862945 -32419544 - AluSq/x SINE Alu -161 151 1 2022 139 20 0 chr12 111863667 111863970 -32418519 + AluSq SINE Alu 1 309 -4 2314 100 3 0 chr12 111864034 111864334 -32418155 + AluSx SINE Alu 1 301 -11 263 197 0 66 chr12 111866313 111866374 -32416115 + MIR SINE MIR 91 147 -61 441 292 0 35 chr12 111866730 111866874 -32415615 - MLT1I LTR MaLR -20 389 251 273 216 0 0 chr12 111866989 111867040 -32415449 + L2 LINE L2 3262 3312 -1 1823 90 126 11 chr12 111867373 111867650 -32414839 + AluSg1 SINE Alu 1 309 0 2045 229 135 22 chr12 111867929 111868415 -32414074 + L1ME LINE L1 4226 4656 -1510 2150 126 0 7 chr12 111868415 111868716 -32413773 + AluSx SINE Alu 1 299 -13 2045 229 135 22 chr12 111868716 111868873 -32413616 + L1ME LINE L1 4656 4794 -1372 2604 170 65 7 chr12 111868873 111869332 -32413157 - MER66B LTR ERV1 0 486 1 2045 229 135 22 chr12 111869332 111869692 -32412797 + L1ME LINE L1 4794 5394 -772 6255 115 112 25 chr12 111869698 111869931 -32412558 - Tigger3b DNA MER2_type -1825 1203 992 2011 107 3 28 chr12 111869931 111870248 -32412241 + AluSx SINE Alu 1 310 0 6255 115 112 25 chr12 111870248 111871120 -32411369 - Tigger3b DNA MER2_type -2036 992 1 802 177 5 81 chr12 111871211 111871409 -32411080 + L1ME LINE L1 5377 5559 -607 1785 115 70 11 chr12 111871412 111871682 -32410807 + AluSx SINE Alu 1 286 -26 207 182 0 23 chr12 111871682 111871711 -32410778 + (TGAA)n Simple_repeat Simple_repeat 1 30 -13 1861 99 121 11 chr12 111871711 111871984 -32410505 + AluSx SINE Alu 1 303 -9 207 182 0 23 chr12 111871984 111871998 -32410491 + (TGAA)n Simple_repeat Simple_repeat 30 43 0 772 251 169 18 chr12 111872610 111872941 -32409548 - MLT1K LTR MaLR -3 585 205 352 304 63 26 chr12 111873348 111873539 -32408950 + MIR SINE MIR 21 218 -44 2251 73 10 3 chr12 111873729 111874017 -32408472 + AluY SINE Alu 3 292 -19 682 281 19 51 chr12 111874922 111875178 -32407311 + MIR SINE MIR 12 259 -3 217 365 76 41 chr12 111876122 111876464 -32406025 + L2 LINE L2 2072 2425 -889 537 298 84 5 chr12 111876491 111876570 -32405919 - MIR SINE MIR -21 241 170 1006 199 0 0 chr12 111876570 111876736 -32405753 - FRAM SINE Alu 0 166 1 537 298 84 5 chr12 111876736 111876871 -32405618 - MIR SINE MIR -92 170 10 304 335 130 10 chr12 111877062 111877262 -32405227 + L2 LINE L2 2627 2850 -464 309 150 300 0 chr12 111877277 111877357 -32405132 + L2 LINE L2 3168 3271 -1 1997 126 14 0 chr12 111877961 111878274 -32404215 + AluSx SINE Alu 1 317 0 1054 154 39 107 chr12 111878333 111878567 -32403922 + MER20 DNA MER1_type 2 219 0 1866 158 3 10 chr12 111879753 111880057 -32402432 + AluJb SINE Alu 1 302 -10 281 275 55 48 chr12 111880555 111880680 -32401809 + MIR SINE MIR 3 127 -81 1356 146 82 5 chr12 111881073 111881292 -32401197 + MER46A DNA MER2_type 1 236 0 403 252 19 10 chr12 111881359 111881462 -32401027 + L2 LINE L2 3169 3272 0 398 261 54 39 chr12 111881569 111881699 -32400790 - L2 LINE L2 0 3272 3141 334 270 28 7 chr12 111882133 111882248 -32400241 - AluJ/FLAM SINE Alu -219 83 11 39591 81 8 7 chr12 111882446 111888570 -32393919 + L1PA6 LINE L1 11 6140 -14 770 167 36 0 chr12 111888673 111888811 -32393678 - Tigger6 DNA MER2_type -936 147 5 1488 235 107 27 chr12 111890038 111890515 -32391974 + LTR33 LTR ERVL 7 521 0 738 45 18 18 chr12 111892202 111892314 -32390175 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 337 280 0 21 chr12 111892315 111892408 -32390081 - MER117 DNA MER1_type -90 107 17 217 247 194 0 chr12 111893063 111893156 -32389333 - L2 LINE L2 -2 3311 3201 1776 156 20 7 chr12 111893355 111893656 -32388833 + AluSq SINE Alu 5 309 -4 1897 151 0 3 chr12 111893720 111894018 -32388471 + AluSx SINE Alu 1 297 -15 189 0 0 0 chr12 111894024 111894045 -32388444 + (CA)n Simple_repeat Simple_repeat 2 22 0 194 250 0 24 chr12 111894228 111894312 -32388177 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 307 198 151 12 chr12 111894474 111894560 -32387929 - MIR SINE MIR -49 213 116 343 252 103 9 chr12 111895126 111895233 -32387256 + FLAM_A SINE Alu 1 117 -16 24 32 0 0 chr12 111895234 111895265 -32387224 + AT_rich Low_complexity Low_complexity 1 31 0 887 226 21 5 chr12 111895521 111895707 -32386782 - MER58A DNA MER1_type -35 189 1 325 341 67 23 chr12 111895720 111896019 -32386470 + L1M4 LINE L1 4828 5139 -1007 2049 136 0 0 chr12 111896064 111896359 -32386130 + AluSg SINE Alu 1 295 -15 334 238 38 9 chr12 111896451 111896556 -32385933 + L1M4 LINE L1 4247 4354 -1792 249 346 67 28 chr12 111897528 111897707 -32384782 - L2 LINE L2 -729 2585 2400 1340 253 0 3 chr12 111897882 111898183 -32384306 + AluJo SINE Alu 2 301 -11 490 266 119 101 chr12 111898188 111898434 -32384055 + L1M4 LINE L1 3110 3350 -2796 811 218 0 0 chr12 111898434 111898567 -32383922 - FLAM_A SINE Alu 0 133 1 490 266 119 101 chr12 111898567 111899082 -32383407 + L1M4 LINE L1 3350 3885 -2261 292 263 58 58 chr12 111899301 111899438 -32383051 + MIR SINE MIR 89 225 -37 1484 191 3 7 chr12 111900239 111900543 -32381946 - AluSp SINE Alu -6 307 5 1560 151 39 32 chr12 111900819 111901104 -32381385 + AluSx SINE Alu 1 287 -25 221 315 11 11 chr12 111901303 111901392 -32381097 - L2 LINE L2 -829 2485 2397 487 235 51 0 chr12 111901765 111901863 -32380626 + MER20 DNA MER1_type 1 103 -116 325 262 83 0 chr12 111901963 111902047 -32380442 + FRAM SINE Alu 69 159 -7 248 262 0 16 chr12 111902047 111902108 -32380381 + (CA)n Simple_repeat Simple_repeat 1 60 0 4254 175 21 58 chr12 111902127 111902700 -32379789 - L1MA9 LINE L1 -67 6245 5723 1562 174 3 20 chr12 111902700 111902998 -32379491 + AluSx SINE Alu 5 297 -15 4254 175 21 58 chr12 111902998 111903418 -32379071 - L1MA9 LINE L1 -589 5723 5289 22 70 0 0 chr12 111903742 111903785 -32378704 + AT_rich Low_complexity Low_complexity 1 43 0 1452 193 3 10 chr12 111904088 111904388 -32378101 - AluSp SINE Alu -15 298 1 340 186 0 0 chr12 111905203 111905262 -32377227 - L1MB8 LINE L1 -4 6174 6116 1441 211 0 14 chr12 111905276 111905585 -32376904 - AluJo SINE Alu 0 305 1 2506 67 0 16 chr12 111905694 111906009 -32376480 + AluY SINE Alu 2 311 0 1068 230 49 46 chr12 111906364 111906668 -32375821 - MSTD LTR MaLR -3 393 89 1454 170 0 0 chr12 111906669 111906892 -32375597 - AluSg/x SINE Alu -15 295 73 25 0 0 0 chr12 111907720 111907745 -32374744 + AT_rich Low_complexity Low_complexity 1 25 0 2212 104 3 0 chr12 111908575 111908862 -32373627 - AluSx SINE Alu -20 292 5 22 0 0 0 chr12 111911005 111911027 -32371462 + AT_rich Low_complexity Low_complexity 1 22 0 398 275 18 0 chr12 111911650 111911759 -32370730 - MIR3 SINE MIR -6 202 92 774 259 16 26 chr12 111914215 111914408 -32368081 - MIR SINE MIR -71 191 1 2063 151 0 59 chr12 111914468 111914826 -32367663 + MER1B DNA MER1_type 1 337 0 2447 84 0 3 chr12 111914952 111915260 -32367229 + AluSx SINE Alu 1 307 -5 2265 82 0 13 chr12 111915738 111916041 -32366448 + AluSq SINE Alu 2 300 -13 518 116 0 0 chr12 111916350 111916419 -32366070 - AluS SINE Alu -239 70 2 271 215 120 47 chr12 111916440 111916631 -32365858 - L1M4 LINE L1 -2734 3412 3208 2080 112 7 3 chr12 111917485 111917780 -32364709 + AluSx SINE Alu 1 296 -16 1580 132 21 28 chr12 111919620 111919907 -32362582 - AluSx SINE Alu -27 285 1 227 260 143 0 chr12 111920073 111920150 -32362339 + L1ME4a LINE L1 5588 5675 -446 829 263 109 8 chr12 111920155 111920513 -32361976 + L1ME4a LINE L1 5698 6091 -30 389 312 8 0 chr12 111921030 111921155 -32361334 - L2 LINE L2 -2 3311 3186 718 266 37 16 chr12 111921156 111921400 -32361089 + L1ME3A LINE L1 5692 5940 -230 1961 81 77 0 chr12 111923499 111923758 -32358731 - AluSq SINE Alu -21 292 14 257 329 130 25 chr12 111924724 111924978 -32357511 - L2 LINE L2 -1217 2097 1818 41 90 0 0 chr12 111925234 111925345 -32357144 + AT_rich Low_complexity Low_complexity 1 111 0 22 0 0 0 chr12 111925649 111925671 -32356818 + AT_rich Low_complexity Low_complexity 1 22 0 1678 68 0 0 chr12 111927555 111927774 -32354715 + L1PA13 LINE L1 5942 6160 -3 40 59 0 0 chr12 111928162 111928230 -32354259 + AT_rich Low_complexity Low_complexity 1 68 0 2258 91 7 3 chr12 111928589 111928887 -32353602 - AluSx SINE Alu -13 299 1 441 276 30 45 chr12 111929065 111929199 -32353290 - MIR SINE MIR -111 151 20 21 0 0 0 chr12 111929390 111929411 -32353078 + AT_rich Low_complexity Low_complexity 1 21 0 1786 150 25 0 chr12 111929504 111929790 -32352699 - AluJo SINE Alu -19 293 1 1088 259 88 38 chr12 111930110 111931274 -32351215 - HAL1 LINE L1 -841 1666 352 259 275 36 65 chr12 111931424 111931562 -32350927 - HAL1 LINE L1 -2364 143 10 465 335 47 6 chr12 111931650 111931820 -32350669 + MIR SINE MIR 24 200 -62 1684 170 28 0 chr12 111932160 111932443 -32350046 + AluJb SINE Alu 12 302 -10 2181 83 0 17 chr12 111932456 111932793 -32349696 + AluSx SINE Alu 2 333 0 329 310 0 0 chr12 111932965 111933052 -32349437 + (CA)n Simple_repeat Simple_repeat 2 88 0 935 278 146 80 chr12 111933611 111933723 -32348766 + L1M4 LINE L1 2506 2609 -3537 721 179 26 0 chr12 111933723 111933840 -32348649 + FLAM_A SINE Alu 1 120 -13 935 278 146 80 chr12 111933840 111934244 -32348245 + L1M4 LINE L1 2609 2985 -3161 1804 193 0 3 chr12 111934244 111934545 -32347944 + AluJo SINE Alu 2 301 -11 935 278 146 80 chr12 111934545 111934796 -32347693 + L1M4 LINE L1 2985 3218 -2928 778 211 0 0 chr12 111934796 111934929 -32347560 - FLAM_A SINE Alu 0 133 1 935 278 146 80 chr12 111934929 111935543 -32346946 + L1M4 LINE L1 3218 3790 -2356 1746 154 0 69 chr12 111935543 111935862 -32346627 + AluJb SINE Alu 1 297 -15 935 278 146 80 chr12 111935862 111935964 -32346525 + L1M4 LINE L1 3790 3884 -2262 1059 227 18 0 chr12 111935964 111936184 -32346305 - MER58A DNA MER1_type 0 224 1 935 278 146 80 chr12 111936184 111936540 -32345949 + L1M4 LINE L1 3884 4215 -1931 2265 102 0 0 chr12 111936540 111936835 -32345654 + AluSg SINE Alu 1 295 -15 935 278 146 80 chr12 111936835 111936939 -32345550 + L1M4 LINE L1 4215 5319 -827 1370 185 16 38 chr12 111936940 111937059 -32345430 + L1M4 LINE L1 4263 4383 -1763 2563 43 0 7 chr12 111937059 111937358 -32345131 + AluY SINE Alu 1 297 -14 1370 185 16 38 chr12 111937358 111937611 -32344878 + L1M4 LINE L1 4383 4627 -1519 1624 209 10 0 chr12 111937611 111937912 -32344577 - AluJb SINE Alu -8 304 1 1791 153 30 6 chr12 111937954 111938293 -32344196 + L1M4 LINE L1 5258 5604 -580 654 178 0 0 chr12 111938293 111938426 -32344063 + AluJb SINE Alu 179 311 0 305 273 41 25 chr12 111938480 111938601 -32343888 + MLT1H LTR MaLR 94 216 -333 2508 64 0 6 chr12 111938897 111939208 -32343281 + AluY SINE Alu 1 309 -2 291 297 125 62 chr12 111939377 111939569 -32342920 - MIR SINE MIR -27 235 32 2883 51 0 19 chr12 111939650 111939675 -32342814 + L1PA8 LINE L1 5805 5829 -343 2378 57 0 20 chr12 111939675 111939972 -32342517 + AluY SINE Alu 1 291 -20 2883 51 0 19 chr12 111939972 111940321 -32342168 + L1PA8 LINE L1 5829 6172 0 1203 194 52 92 chr12 111940341 111940670 -32341819 + L1MA9 LINE L1 5814 6122 -190 1816 151 4 4 chr12 111940670 111940977 -32341512 - AluJb SINE Alu 0 309 3 1203 194 52 92 chr12 111940977 111941124 -32341365 + L1MA9 LINE L1 6122 6273 -39 23 0 0 0 chr12 111941124 111941147 -32341342 + AT_rich Low_complexity Low_complexity 1 23 0 2189 93 0 3 chr12 111942920 111943209 -32339280 + AluSx SINE Alu 7 294 -18 656 173 86 7 chr12 111943209 111943348 -32339141 + MER5A DNA MER1_type 29 178 -11 1288 117 17 69 chr12 111943917 111944148 -32338341 + MER20 DNA MER1_type 1 219 0 341 281 88 35 chr12 111944155 111944326 -32338163 - MIR SINE MIR -71 191 12 882 192 0 0 chr12 111946172 111946342 -32336147 + FRAM SINE Alu 1 169 0 1042 164 6 23 chr12 111946370 111946547 -32335942 - FAM SINE Alu 0 175 2 2426 116 72 12 chr12 111946624 111946982 -32335507 + MSTA LTR MaLR 1 387 -41 2377 89 0 0 chr12 111946982 111947284 -32335205 - AluY SINE Alu -9 302 1 2426 116 72 12 chr12 111947284 111947329 -32335160 + MSTA LTR MaLR 387 428 0 195 184 0 0 chr12 111949152 111949190 -32333299 + (TA)n Simple_repeat Simple_repeat 1 38 0 253 264 22 0 chr12 111949337 111949428 -32333061 - L1ME4a LINE L1 -182 5939 5847 21 0 0 0 chr12 111949691 111949712 -32332777 + AT_rich Low_complexity Low_complexity 1 21 0 412 167 12 0 chr12 111949712 111949796 -32332693 + L1MB4 LINE L1 6096 6180 0 25 0 0 0 chr12 111950119 111950144 -32332345 + AT_rich Low_complexity Low_complexity 1 25 0 222 316 133 10 chr12 111951480 111951578 -32330911 - L2 LINE L2 0 3272 3163 405 244 12 0 chr12 111951647 111951729 -32330760 - L2 LINE L2 -36 3277 3195 * 698 355 56 17 chr12 111951725 111952083 -32330406 + L2 LINE L2 2214 2585 -729 2244 104 0 3 chr12 111953221 111953510 -32328979 - AluSq SINE Alu -25 288 1 1784 167 27 0 chr12 111953521 111953815 -32328674 - AluJb SINE Alu -10 302 1 511 312 49 39 chr12 111954108 111954313 -32328176 - MIR SINE MIR -32 230 24 259 275 36 65 chr12 111954401 111954539 -32327950 + HAL1 LINE L1 10 143 -2364 2161 265 101 30 chr12 111954689 111956389 -32326100 + HAL1 LINE L1 352 2266 -241 291 165 0 106 chr12 111956411 111956467 -32326022 + Tigger2 DNA MER2_type 2 48 -2670 2327 92 0 13 chr12 111956467 111956770 -32325719 - AluY SINE Alu -12 299 1 291 165 0 106 chr12 111956770 111956791 -32325698 + Tigger2 DNA MER2_type 48 70 -2648 271 190 103 0 chr12 111956791 111956849 -32325640 - MER2 DNA MER2_type 0 345 282 * 759 211 29 11 chr12 111956825 111957000 -32325489 - MER8 DNA MER2_type -61 178 1 341 261 23 54 chr12 111957005 111957135 -32325354 + HAL1 LINE L1 2344 2469 -38 305 350 11 50 chr12 111957692 111957872 -32324617 - MER5B DNA MER1_type -4 174 2 28 61 0 0 chr12 111958062 111958111 -32324378 + AT_rich Low_complexity Low_complexity 1 49 0 354 98 0 0 chr12 111958495 111958546 -32323943 + (TA)n Simple_repeat Simple_repeat 1 51 0 375 23 0 0 chr12 111958546 111958590 -32323899 + (CA)n Simple_repeat Simple_repeat 2 45 0 2309 104 7 0 chr12 111958631 111958928 -32323561 - AluSx SINE Alu -13 299 1 201 108 0 0 chr12 111959342 111959379 -32323110 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 339 127 0 63 chr12 111959735 111959786 -32322703 + AluJ/FLAM SINE Alu 2 50 -252 1682 97 0 0 chr12 111959786 111960003 -32322486 + AluSg/x SINE Alu 84 300 -10 339 127 0 63 chr12 111960003 111960014 -32322475 + AluJ/FLAM SINE Alu 50 60 -242 336 181 75 60 chr12 111960014 111960147 -32322342 + HAL1 LINE L1 2244 2378 -129 1206 308 125 21 chr12 111960944 111961909 -32320580 + L2 LINE L2 2240 3304 -9 1714 163 10 17 chr12 111961967 111962255 -32320234 - AluJo SINE Alu -26 286 1 2308 167 54 29 chr12 111962266 111962817 -32319672 - L1MD3 LINE L1 0 7995 7431 308 222 0 0 chr12 111962874 111962937 -32319552 - MLT1F1 LTR MaLR -442 125 63 1057 189 0 0 chr12 111964074 111964243 -32318246 - AluJb SINE Alu -9 303 135 23 0 0 0 chr12 111964376 111964399 -32318090 + AT_rich Low_complexity Low_complexity 1 23 0 834 287 12 8 chr12 111964549 111964807 -32317682 - MIR SINE MIR -2 260 2 1732 133 101 16 chr12 111965451 111965768 -32316721 - MER2 DNA MER2_type 0 344 1 615 180 7 43 chr12 111965990 111966129 -32316360 + MER94 DNA DNA 1 134 0 376 226 78 43 chr12 111966700 111966815 -32315674 - L2 LINE L2 -2 3311 3193 1289 264 154 6 chr12 111966847 111967321 -32315168 + MLT1H1 LTR MaLR 12 555 0 381 335 50 11 chr12 111967506 111967688 -32314801 + HAL1 LINE L1 1550 1738 -769 2350 66 0 10 chr12 111967699 111967987 -32314502 + AluY SINE Alu 1 285 -26 191 61 30 0 chr12 111967990 111968023 -32314466 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2230 92 7 3 chr12 111968458 111968790 -32313699 + AluSx SINE Alu 1 333 0 329 310 0 0 chr12 111968962 111969049 -32313440 + (CA)n Simple_repeat Simple_repeat 2 88 0 935 278 146 80 chr12 111969608 111969720 -32312769 + L1M4 LINE L1 2506 2609 -3537 721 179 26 0 chr12 111969720 111969837 -32312652 + FLAM_A SINE Alu 1 120 -13 935 278 146 80 chr12 111969837 111970241 -32312248 + L1M4 LINE L1 2609 2985 -3161 1804 193 0 3 chr12 111970241 111970542 -32311947 + AluJo SINE Alu 2 301 -11 935 278 146 80 chr12 111970542 111970793 -32311696 + L1M4 LINE L1 2985 3218 -2928 778 211 0 0 chr12 111970793 111970926 -32311563 - FLAM_A SINE Alu 0 133 1 935 278 146 80 chr12 111970926 111971540 -32310949 + L1M4 LINE L1 3218 3790 -2356 1746 154 0 69 chr12 111971540 111971859 -32310630 + AluJb SINE Alu 1 297 -15 935 278 146 80 chr12 111971859 111971961 -32310528 + L1M4 LINE L1 3790 3884 -2262 1059 227 18 0 chr12 111971961 111972181 -32310308 - MER58A DNA MER1_type 0 224 1 935 278 146 80 chr12 111972181 111972537 -32309952 + L1M4 LINE L1 3884 4215 -1931 2265 102 0 0 chr12 111972537 111972832 -32309657 + AluSg SINE Alu 1 295 -15 935 278 146 80 chr12 111972832 111972936 -32309553 + L1M4 LINE L1 4215 5319 -827 1370 185 16 38 chr12 111972937 111973056 -32309433 + L1M4 LINE L1 4263 4383 -1763 2563 43 0 7 chr12 111973056 111973355 -32309134 + AluY SINE Alu 1 297 -14 1370 185 16 38 chr12 111973355 111973608 -32308881 + L1M4 LINE L1 4383 4627 -1519 1624 209 10 0 chr12 111973608 111973909 -32308580 - AluJb SINE Alu -8 304 1 1791 153 30 6 chr12 111973951 111974290 -32308199 + L1M4 LINE L1 5258 5604 -580 654 178 0 0 chr12 111974290 111974423 -32308066 + AluJb SINE Alu 179 311 0 305 273 41 25 chr12 111974477 111974598 -32307891 + MLT1H LTR MaLR 94 216 -333 2508 64 0 6 chr12 111974894 111975205 -32307284 + AluY SINE Alu 1 309 -2 291 297 125 62 chr12 111975374 111975566 -32306923 - MIR SINE MIR -27 235 32 217 182 0 55 chr12 111975631 111975647 -32306842 + A-rich Low_complexity Low_complexity 1 16 -36 2928 51 0 19 chr12 111975647 111975672 -32306817 + L1PA8 LINE L1 5805 5829 -343 2427 57 0 20 chr12 111975672 111975969 -32306520 + AluY SINE Alu 1 291 -20 2928 51 0 19 chr12 111975969 111976318 -32306171 + L1PA8 LINE L1 5829 6172 0 217 182 0 55 chr12 111976318 111976356 -32306133 + A-rich Low_complexity Low_complexity 16 52 0 * 1364 194 52 92 chr12 111976338 111976667 -32305822 + L1MA9 LINE L1 5814 6122 -190 1901 140 4 4 chr12 111976667 111976974 -32305515 - AluJb SINE Alu 0 309 3 1364 194 52 92 chr12 111976974 111977121 -32305368 + L1MA9 LINE L1 6122 6273 -39 23 0 0 0 chr12 111977121 111977144 -32305345 + AT_rich Low_complexity Low_complexity 1 23 0 2223 93 0 3 chr12 111978917 111979206 -32303283 + AluSx SINE Alu 7 294 -18 614 173 86 7 chr12 111979206 111979345 -32303144 + MER5A DNA MER1_type 29 178 -11 1311 117 17 69 chr12 111979914 111980145 -32302344 + MER20 DNA MER1_type 1 219 0 280 281 88 35 chr12 111980152 111980323 -32302166 - MIR SINE MIR -71 191 12 514 281 39 54 chr12 111982114 111982374 -32300115 - MIR SINE MIR -5 257 2 923 176 36 0 chr12 111982439 111982604 -32299885 - FRAM SINE Alu -9 167 1 446 211 15 83 chr12 111982671 111982804 -32299685 + L1MA9 LINE L1 6093 6216 -96 566 81 0 69 chr12 111982820 111982907 -32299582 - MER1B DNA MER1_type 0 329 249 1206 117 6 0 chr12 111982916 111983087 -32299402 - MER1B DNA MER1_type -64 275 104 21 0 0 0 chr12 111983199 111983220 -32299269 + AT_rich Low_complexity Low_complexity 1 21 0 701 190 0 0 chr12 111983229 111983345 -32299144 + AluJb SINE Alu 3 118 -194 1890 117 8 4 chr12 111983629 111983893 -32298596 + AluSx SINE Alu 1 265 -47 1599 210 104 25 chr12 111984375 111984631 -32297858 - MLT1C LTR MaLR 0 467 162 1965 175 0 0 chr12 111984631 111984934 -32297555 - AluJb SINE Alu -9 303 1 1599 210 104 25 chr12 111984934 111985110 -32297379 - MLT1C LTR MaLR -305 162 1 403 354 76 21 chr12 111985254 111985726 -32296763 - L2 LINE L2 -1131 2183 1686 1282 224 62 6 chr12 111985898 111986213 -32296276 + MLT1J LTR MaLR 22 325 -125 1310 196 9 9 chr12 111986420 111986650 -32295839 + Tigger7 DNA MER2_type 29 258 -2229 463 158 13 0 chr12 111986654 111986730 -32295759 + Tigger7 DNA MER2_type 2403 2479 -8 597 221 0 8 chr12 111986929 111987060 -32295429 + MIR SINE MIR 69 198 -64 4197 131 38 21 chr12 111987061 111987773 -32294716 + L1M3f LINE L1 10 733 -4595 1316 178 16 0 chr12 111987793 111988040 -32294449 - Tigger6a DNA MER2_type 0 1083 833 1820 165 53 0 chr12 111988040 111988325 -32294164 - AluJb SINE Alu -12 300 1 2620 189 58 8 chr12 111988336 111988871 -32293618 - Tigger6a DNA MER2_type -404 679 118 945 184 22 23 chr12 111988973 111989284 -32293205 + L1MA9 LINE L1 5885 6291 -21 31 44 0 0 chr12 111989284 111989329 -32293160 + AT_rich Low_complexity Low_complexity 1 45 0 2506 68 0 0 chr12 111989367 111989659 -32292830 - AluY SINE Alu -19 292 1 288 198 276 9 chr12 111989688 111989804 -32292685 - MIR SINE MIR 0 262 116 567 170 104 0 chr12 111990370 111990476 -32292013 + FLAM_A SINE Alu 1 117 -16 25 31 0 0 chr12 111990477 111990509 -32291980 + AT_rich Low_complexity Low_complexity 1 32 0 303 283 36 54 chr12 111990780 111990946 -32291543 + MIR SINE MIR 50 212 -50 738 133 17 0 chr12 111991047 111991167 -32291322 + Charlie5 DNA MER1_type 6 127 -2485 * 789 158 9 136 chr12 111991164 111991255 -32291234 + Charlie5 DNA MER1_type 2234 2280 -344 503 130 16 73 chr12 111991255 111991378 -32291111 - L1MA4 LINE L1 -4 6296 6181 789 158 9 136 chr12 111991378 111991514 -32290975 + Charlie5 DNA MER1_type 2280 2432 -192 1687 100 93 0 chr12 111991516 111991786 -32290703 + L1MA5A LINE L1 5987 6281 -16 748 125 50 19 chr12 111991816 111991976 -32290513 + Charlie5 DNA MER1_type 2421 2585 -27 1103 158 0 18 chr12 111991976 111992147 -32290342 + FRAM SINE Alu 1 166 -10 2408 80 3 0 chr12 111992149 111992450 -32290039 + AluSx SINE Alu 1 302 -10 339 292 29 44 chr12 111994260 111994397 -32288092 + MIR SINE MIR 13 147 -115 222 250 11 65 chr12 111994616 111994708 -32287781 + CT-rich Low_complexity Low_complexity 2 88 0 603 221 29 0 chr12 111994838 111994978 -32287511 - MER103 DNA DNA -21 145 2 907 203 132 0 chr12 111995201 111995398 -32287091 - MER58A DNA MER1_type 0 224 2 1983 140 3 33 chr12 111995497 111995656 -32286833 + MLT1A1 LTR MaLR 1 146 -219 2362 103 0 3 chr12 111995656 111995956 -32286533 + AluSp SINE Alu 1 299 -14 1983 140 3 33 chr12 111995956 111996131 -32286358 + MLT1A1 LTR MaLR 146 325 -40 1663 169 21 28 chr12 111996138 111996428 -32286061 + AluJo SINE Alu 6 293 -19 779 262 62 0 chr12 111996764 111996989 -32285500 + MIR SINE MIR 14 252 -10 437 267 80 27 chr12 111997225 111997280 -32285209 - MER117 DNA MER1_type -23 174 123 738 45 18 18 chr12 111997280 111997392 -32285097 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 437 267 80 27 chr12 111997392 111997486 -32285003 - MER117 DNA MER1_type -74 123 17 191 222 0 0 chr12 111998141 111998186 -32284303 - L2 LINE L2 -2 3311 3267 362 283 131 7 chr12 111998239 111998384 -32284105 + L1MC4 LINE L1 7812 7974 -68 1986 241 224 24 chr12 111998790 111999495 -32282994 - L2 LINE L2 0 3313 2750 2159 130 0 0 chr12 111999495 111999794 -32282695 + AluSx SINE Alu 1 299 -13 1986 241 224 24 chr12 111999794 112000198 -32282291 - L2 LINE L2 -563 2750 1983 1417 141 13 9 chr12 112000364 112000591 -32281898 - MER30 DNA MER1_type 0 230 3 459 261 172 56 chr12 112000778 112001138 -32281351 - MLT1J LTR MaLR -19 492 91 244 278 82 31 chr12 112001221 112001318 -32281171 - L2 LINE L2 -32 3281 3180 267 240 53 13 chr12 112001522 112001597 -32280892 + L2 LINE L2 3194 3271 -1 2078 98 0 51 chr12 112001663 112001835 -32280654 - AluSx SINE Alu 0 305 154 2285 105 0 0 chr12 112001835 112002130 -32280359 - AluSx SINE Alu -17 295 1 2078 98 0 51 chr12 112002130 112002277 -32280212 - AluSx SINE Alu -151 154 1 21 0 0 0 chr12 112002379 112002400 -32280089 + AT_rich Low_complexity Low_complexity 1 21 0 396 248 128 8 chr12 112002842 112002959 -32279530 + L2 LINE L2 3136 3266 -6 485 173 0 48 chr12 112003522 112003626 -32278863 + MIR3 SINE MIR 101 199 -9 1485 222 69 80 chr12 112003862 112004068 -32278421 - MER20B DNA MER1_type -123 660 453 2376 102 0 6 chr12 112004068 112004382 -32278107 + AluSx SINE Alu 1 312 0 1485 222 69 80 chr12 112004382 112004724 -32277765 - MER20B DNA MER1_type -330 453 118 198 321 18 0 chr12 112005051 112005107 -32277382 + L2 LINE L2 3248 3304 -9 26 64 0 0 chr12 112006141 112006188 -32276301 + AT_rich Low_complexity Low_complexity 1 47 0 1722 143 44 7 chr12 112006295 112006567 -32275922 - AluJo SINE Alu -30 282 1 598 221 22 86 chr12 112006603 112006658 -32275831 - MIR SINE MIR -22 240 183 2456 96 0 0 chr12 112006658 112006971 -32275518 + AluSq SINE Alu 1 313 0 598 221 22 86 chr12 112006971 112007137 -32275352 - MIR SINE MIR -79 183 33 234 272 136 35 chr12 112007398 112007626 -32274863 - L1ME4a LINE L1 -12 6109 5859 1993 141 0 24 chr12 112007627 112007924 -32274565 + AluSx SINE Alu 2 291 -21 210 227 216 23 chr12 112007938 112008026 -32274463 - L2 LINE L2 -25 3288 3184 429 250 161 12 chr12 112008206 112008374 -32274115 + MIR SINE MIR 2 194 -68 816 228 73 23 chr12 112008376 112008635 -32273854 - MER74B LTR ERVL 0 622 351 939 171 28 74 chr12 112008635 112008852 -32273637 - AluJb SINE Alu -19 293 87 525 153 12 0 chr12 112008852 112008937 -32273552 - MER74B LTR ERVL -263 359 274 437 245 77 35 chr12 112008952 112009095 -32273394 - MER74A LTR ERVL -409 149 1 466 148 37 118 chr12 112010210 112010245 -32272244 - MER53 DNA DNA 0 189 153 2163 115 3 3 chr12 112010245 112010541 -32271948 - AluSx SINE Alu -16 296 1 466 148 37 118 chr12 112010541 112010640 -32271849 - MER53 DNA DNA -36 153 66 * 638 151 55 27 chr12 112010635 112010781 -32271708 - MER53 DNA DNA -34 155 6 594 192 72 8 chr12 112011453 112011578 -32270911 - FLAM_A SINE Alu 0 133 1 2109 158 0 0 chr12 112011804 112012114 -32270375 + AluSx SINE Alu 1 310 -2 2112 140 0 3 chr12 112012436 112012736 -32269753 + AluJb SINE Alu 1 299 -13 777 237 53 18 chr12 112013173 112013401 -32269088 + MIR SINE MIR 6 241 -21 816 257 108 53 chr12 112013870 112014248 -32268241 - MLT1J LTR MaLR -82 429 31 1868 104 23 8 chr12 112014272 112014531 -32267958 - AluSq SINE Alu -12 301 39 2429 90 3 0 chr12 112015793 112016094 -32266395 - AluSp SINE Alu -11 302 1 702 252 69 20 chr12 112016822 112017068 -32265421 + MIR SINE MIR 5 262 0 305 257 164 29 chr12 112017611 112017751 -32264738 + MIR SINE MIR 83 241 -21 253 216 108 39 chr12 112017752 112017854 -32264635 + MLT1I LTR MaLR 2 110 -299 703 199 133 24 chr12 112017858 112018024 -32264465 + MLT1I LTR MaLR 214 397 -12 238 195 0 0 chr12 112018120 112018161 -32264328 + MLT1I LTR MaLR 357 397 -12 203 278 143 32 chr12 112018293 112018419 -32264070 + MIR SINE MIR 51 190 -72 211 132 26 0 chr12 112019696 112019734 -32262755 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 346 293 10 0 chr12 112019945 112020044 -32262445 + CT-rich Low_complexity Low_complexity 2 101 0 293 363 55 0 chr12 112020048 112020194 -32262295 - L2 LINE L2 0 3272 3119 2441 91 0 0 chr12 112020903 112021212 -32261277 - AluSc SINE Alu 0 309 1 212 296 113 26 chr12 112021731 112021846 -32260643 - L2 LINE L2 0 3272 3148 354 303 91 17 chr12 112021859 112022034 -32260455 - MIR SINE MIR -18 244 57 436 322 219 9 chr12 112023318 112024299 -32258190 - L2 LINE L2 -23 3249 2037 385 289 148 32 chr12 112025499 112025783 -32256706 + L2 LINE L2 2282 2598 -716 3285 168 4 0 chr12 112025808 112026368 -32256121 - L1MC3 LINE L1 -1910 5875 5314 5935 95 8 4 chr12 112026359 112026754 -32255735 - L1PA15 LINE L1 -8 6157 5765 2122 138 0 0 chr12 112026754 112027050 -32255439 - AluSx SINE Alu -14 298 3 5935 95 8 4 chr12 112027050 112028122 -32254367 - L1PA15 LINE L1 -400 5765 4697 1683 222 32 26 chr12 112028141 112028605 -32253884 + MLT1C LTR MaLR 1 467 0 1897 234 45 14 chr12 112028605 112029185 -32253304 - L1MC3 LINE L1 -1467 4679 4082 949 346 57 45 chr12 112029185 112029904 -32252585 + L2 LINE L2 2568 3286 -27 374 346 82 50 chr12 112029948 112030327 -32252162 + L2 LINE L2 2856 3246 -26 202 217 8 33 chr12 112131034 112131154 -32151335 + (TATATG)n Simple_repeat Simple_repeat 6 122 0 510 17 0 0 chr12 112131352 112131411 -32151078 + (TA)n Simple_repeat Simple_repeat 2 60 0 2342 212 82 15 chr12 112131921 112132445 -32150044 - MER68 LTR ERV1 0 562 4 2028 112 0 42 chr12 112133059 112133371 -32149118 - AluSx SINE Alu -13 299 1 1362 210 42 52 chr12 112133808 112134430 -32148059 + MLT1D LTR MaLR 11 505 0 1132 284 130 9 chr12 112134489 112134950 -32147539 + MLT1K LTR MaLR 70 586 -2 237 309 93 10 chr12 112135227 112135324 -32147165 - MIR SINE MIR -86 122 18 285 330 21 21 chr12 112135730 112135827 -32146662 - MIR3 SINE MIR -9 199 103 407 256 183 6 chr12 112135828 112135992 -32146497 - LTR67 LTR ERVL 0 557 365 1117 234 86 29 chr12 112136009 112136393 -32146096 + MLT1C LTR MaLR 9 414 -53 1239 115 0 0 chr12 112136453 112136636 -32145853 + AluSg/x SINE Alu 85 267 -45 1346 181 83 58 chr12 112136638 112136964 -32145525 - MLT1B LTR MaLR -29 361 28 256 280 53 0 chr12 112136977 112137052 -32145437 - MIR3 SINE MIR -119 89 11 559 246 58 58 chr12 112137260 112137467 -32145022 - LTR67 LTR ERVL 0 557 351 360 252 92 25 chr12 112137556 112137675 -32144814 - MIR SINE MIR -47 215 89 299 276 92 65 chr12 112137761 112137946 -32144543 - L1ME LINE L1 -541 5580 5391 2224 113 47 14 chr12 112137949 112138293 -32144196 - THE1A LTR MaLR 0 355 1 369 0 0 0 chr12 112138328 112138369 -32144120 + (TG)n Simple_repeat Simple_repeat 1 41 0 1439 133 12 16 chr12 112138464 112138713 -32143776 - L1PA16 LINE L1 -4 6162 5915 1931 109 61 0 chr12 112138755 112139049 -32143440 - AluSq SINE Alu -1 312 1 185 245 19 38 chr12 112139152 112139205 -32143284 - L2 LINE L2 -8 3305 3254 1618 154 10 14 chr12 112139710 112140003 -32142486 + AluJo SINE Alu 9 300 -12 401 339 54 23 chr12 112140027 112140248 -32142241 + MIR SINE MIR 18 245 -17 330 259 66 67 chr12 112140956 112141137 -32141352 - L1M1 LINE L1 -554 5567 5399 2747 214 112 26 chr12 112141623 112142399 -32140090 + L1ME2 LINE L1 5313 6155 -9 1976 81 48 4 chr12 112142464 112142737 -32139752 - AluSx SINE Alu -13 299 15 1891 134 27 0 chr12 112143760 112144059 -32138430 + AluSx SINE Alu 1 307 -5 316 211 31 25 chr12 112144083 112144244 -32138245 + CT-rich Low_complexity Low_complexity 2 163 0 339 305 9 9 chr12 112144279 112144384 -32138105 + CT-rich Low_complexity Low_complexity 1 105 0 2306 32 3 7 chr12 112145023 112145335 -32137154 + AluY SINE Alu 1 311 0 224 247 11 90 chr12 112145709 112145798 -32136691 - L3 LINE CR1 -1 1576 1495 246 279 15 29 chr12 112145807 112145875 -32136614 - L2 LINE L2 -19 3294 3228 202 235 0 39 chr12 112146764 112146815 -32135674 - L2 LINE L2 -3 3310 3262 249 108 0 0 chr12 112148690 112148727 -32133762 + (T)n Simple_repeat Simple_repeat 1 37 0 2076 119 0 0 chr12 112151286 112151596 -32130893 + AluSx SINE Alu 1 310 -2 282 304 49 29 chr12 112151808 112151910 -32130579 + L2 LINE L2 3169 3272 0 377 244 83 87 chr12 112152743 112152786 -32129703 - L1ME4a LINE L1 -11 6110 6068 2263 98 0 9 chr12 112152786 112153101 -32129388 + AluSp SINE Alu 1 312 -1 377 244 83 87 chr12 112153101 112153286 -32129203 - L1ME4a LINE L1 -53 6068 5883 361 58 0 0 chr12 112153632 112153684 -32128805 + L1MA1 LINE L1 6249 6300 -2 965 231 193 58 chr12 112154413 112154896 -32127593 - L2 LINE L2 -32 3281 2727 2040 125 10 0 chr12 112154972 112155269 -32127220 - AluSx SINE Alu -12 300 1 813 149 0 50 chr12 112155400 112155561 -32126928 - FRAM SINE Alu -8 168 16 2063 98 29 13 chr12 112156757 112157063 -32125426 - AluSx SINE Alu 0 312 2 236 203 14 68 chr12 112157063 112157137 -32125352 - LTR33A LTR ERVL -33 490 421 311 272 26 88 chr12 112157420 112157534 -32124955 - LTR67 LTR ERVL -338 219 56 815 259 92 43 chr12 112157729 112158077 -32124412 - Charlie7 DNA MER1_type -1986 626 262 576 262 77 45 chr12 112158857 112159078 -32123411 - L2 LINE L2 -6 3307 3080 264 185 12 37 chr12 112159129 112159210 -32123279 + (CCCG)n Simple_repeat Simple_repeat 2 80 0 42949 46 2 1 chr12 112159528 112164743 -32117746 - L1P LINE L1 -927 5219 1 509 207 35 55 chr12 112164743 112164888 -32117601 + HsTC2 DNA Tc2 1757 1898 0 449 167 130 37 chr12 112164960 112165068 -32117421 - MIR SINE MIR -119 143 26 188 86 29 0 chr12 112165639 112165674 -32116815 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 183 156 0 0 chr12 112165891 112165923 -32116566 + GA-rich Low_complexity Low_complexity 2 33 0 2543 114 5 14 chr12 112165998 112166365 -32116124 + THE1B LTR MaLR 1 364 0 855 201 108 39 chr12 112167329 112167608 -32114881 - L2 LINE L2 0 3313 3016 371 240 44 103 chr12 112167638 112167719 -32114770 - L2 LINE L2 -782 2532 2448 1494 232 89 69 chr12 112167719 112167819 -32114670 + MLT1E LTR MaLR 1 97 -496 2219 89 0 3 chr12 112167819 112168111 -32114378 - AluSg SINE Alu -19 291 1 1494 232 89 69 chr12 112168111 112168591 -32113898 + MLT1E LTR MaLR 97 593 0 371 240 44 103 chr12 112168591 112168684 -32113805 - L2 LINE L2 -866 2448 2351 1546 121 39 0 chr12 112168684 112168916 -32113573 - AluSx SINE Alu -14 298 58 1664 101 40 8 chr12 112168917 112169165 -32113324 - AluSq SINE Alu -53 260 5 371 240 44 103 chr12 112169165 112169191 -32113298 - L2 LINE L2 -962 2352 2341 1889 151 0 3 chr12 112169340 112169638 -32112851 + AluJb SINE Alu 1 297 -15 361 198 12 47 chr12 112170163 112170249 -32112240 + MLT1L LTR MaLR 144 226 -389 739 259 33 56 chr12 112170279 112170549 -32111940 + MLT1L LTR MaLR 350 613 -2 250 243 13 130 chr12 112170787 112170878 -32111611 + MIR SINE MIR 7 107 -105 2218 90 6 10 chr12 112170878 112171190 -32111299 - AluSp SINE Alu -2 311 1 2164 101 0 0 chr12 112171198 112171521 -32110968 - AluSx SINE Alu 0 312 2 250 243 13 130 chr12 112171521 112171570 -32110919 + MIR SINE MIR 114 147 -65 680 248 108 14 chr12 112171610 112171950 -32110539 + MLT1J2 LTR MaLR 1 435 -15 1028 215 61 103 chr12 112172081 112172310 -32110179 - MLT1A2 LTR MaLR -2 622 385 222 37 0 0 chr12 112172310 112172337 -32110152 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2805 77 11 8 chr12 112172337 112172714 -32109775 - L1PA8 LINE L1 -11 6161 5784 1028 215 61 103 chr12 112172714 112172906 -32109583 - MLT1A2 LTR MaLR -237 387 1 265 236 28 0 chr12 112173001 112173073 -32109416 - MER113 DNA MER1_type? -422 99 26 197 300 0 0 chr12 112173079 112173129 -32109360 + MIR SINE MIR 158 207 -55 1483 164 0 4 chr12 112173148 112173392 -32109097 + AluJb SINE Alu 40 282 -30 477 328 16 0 chr12 112173654 112173776 -32108713 + L2 LINE L2 3148 3271 -1 191 289 105 18 chr12 112173796 112173872 -32108617 - MIR3 SINE MIR -3 205 114 2252 92 3 0 chr12 112173872 112174175 -32108314 + AluSp SINE Alu 3 306 -7 191 289 105 18 chr12 112174175 112174212 -32108277 - MIR3 SINE MIR -94 114 82 665 250 141 0 chr12 112174218 112174402 -32108087 - MER20B DNA MER1_type -568 215 6 1556 167 59 10 chr12 112174530 112174818 -32107671 + AluJo SINE Alu 1 302 -10 2496 58 0 0 chr12 112175375 112175683 -32106806 - AluY SINE Alu -3 308 1 854 274 10 0 chr12 112176318 112176526 -32105963 + MER63A DNA MER1_type 1 210 0 1675 164 22 0 chr12 112176544 112176843 -32105646 - AluJo SINE Alu 0 307 3 903 296 33 38 chr12 112176848 112177240 -32105249 - L2 LINE L2 -13 3300 2911 323 276 0 0 chr12 112177568 112177644 -32104845 + L2 LINE L2 3230 3305 -8 305 204 0 0 chr12 112177657 112177711 -32104778 + MER20B DNA MER1_type 516 569 -214 616 200 45 7 chr12 112177859 112178014 -32104475 + MER20B DNA MER1_type 594 754 -29 231 326 41 0 chr12 112178794 112178892 -32103597 - MIR SINE MIR -69 139 38 1899 179 54 21 chr12 112178949 112178976 -32103513 - MLT2D LTR ERVL -15 399 374 396 0 0 0 chr12 112178976 112179020 -32103469 + (TG)n Simple_repeat Simple_repeat 2 45 0 1899 179 54 21 chr12 112179020 112179378 -32103111 - MLT2D LTR ERVL -40 374 1 251 318 0 0 chr12 112179581 112179669 -32102820 - L1ME LINE L1 -223 5898 5811 475 252 8 8 chr12 112179710 112179829 -32102660 + MLT1K LTR MaLR 16 134 -454 2150 119 7 0 chr12 112179877 112180170 -32102319 + AluSx SINE Alu 1 295 -17 1147 191 70 47 chr12 112180170 112180469 -32102020 + MLT1K LTR MaLR 275 580 -8 2044 164 0 0 chr12 112180616 112180928 -32101561 + AluJo SINE Alu 1 312 0 180 256 0 0 chr12 112181110 112181153 -32101336 + L2 LINE L2 2778 2820 -494 2085 119 0 3 chr12 112181209 112181494 -32100995 + AluSx SINE Alu 3 286 -26 191 35 0 35 chr12 112181501 112181530 -32100959 + (TAAAA)n Simple_repeat Simple_repeat 4 31 0 265 209 128 0 chr12 112181535 112181621 -32100868 - MER5A DNA MER1_type -83 106 10 2658 107 3 5 chr12 112182441 112182815 -32099674 + THE1C LTR MaLR 3 375 0 538 245 55 31 chr12 112183544 112183707 -32098782 + LTR16A LTR ERVL 276 442 -8 909 222 39 50 chr12 112183888 112184276 -32098213 - Charlie4a DNA MER1_type -55 453 17 251 28 28 0 chr12 112184300 112184336 -32098153 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1818 174 28 19 chr12 112184433 112184795 -32097694 + MLT1A1 LTR MaLR 1 365 0 603 287 66 72 chr12 112185505 112185825 -32096664 - L2 LINE L2 0 3313 2996 2246 120 0 3 chr12 112185825 112186124 -32096365 + AluSx SINE Alu 1 298 -14 603 287 66 72 chr12 112186124 112186291 -32096198 - L2 LINE L2 -317 2996 2829 341 358 77 42 chr12 112186283 112186543 -32095946 - L2 LINE L2 -41 3231 2963 * 1959 257 91 19 chr12 112186678 112187600 -32094889 - L2 LINE L2 -52 3261 2272 527 255 68 27 chr12 112187611 112187852 -32094637 - L1M4 LINE L1 -864 5282 5028 2229 123 3 0 chr12 112187852 112188154 -32094335 - AluSx SINE Alu -9 303 1 527 255 68 27 chr12 112188154 112188175 -32094314 - L1M4 LINE L1 -1118 5028 5009 2178 125 0 10 chr12 112188177 112188481 -32094008 - AluSq SINE Alu -12 301 1 425 241 21 69 chr12 112188864 112188941 -32093548 + MER5A DNA MER1_type 2 71 -118 2106 102 3 7 chr12 112188941 112189250 -32093239 + AluY SINE Alu 1 308 0 425 241 21 69 chr12 112189250 112189316 -32093173 + MER5A DNA MER1_type 71 139 -50 1721 251 44 24 chr12 112189334 112189829 -32092660 - L1ME1 LINE L1 -4 6162 5658 187 250 47 16 chr12 112189829 112189893 -32092596 + MER5A DNA MER1_type 124 189 0 816 173 12 6 chr12 112190225 112190393 -32092096 - L1MB3 LINE L1 -3 6180 6012 243 310 120 0 chr12 112190495 112190637 -32091852 + MIR SINE MIR 48 206 -56 2047 98 26 0 chr12 112190644 112190908 -32091581 + AluSg SINE Alu 21 291 -19 27 0 0 0 chr12 112190911 112190938 -32091551 + AT_rich Low_complexity Low_complexity 1 27 0 1116 201 35 126 chr12 112190994 112191501 -32090988 + MER4C LTR ERV1 1 461 -4 741 215 45 6 chr12 112191543 112191720 -32090769 + MIR SINE MIR 79 262 0 2529 142 40 48 chr12 112192228 112192845 -32089644 - MER4B LTR ERV1 0 779 3 282 143 0 0 chr12 112193208 112193254 -32089235 - AluJb SINE Alu -180 122 85 1282 150 0 44 chr12 112193254 112193481 -32089008 - AluJo SINE Alu -95 217 1 326 301 74 66 chr12 112194043 112194299 -32088190 - L2 LINE L2 0 3272 3015 1951 193 83 9 chr12 112196250 112196685 -32085804 + MLT1C LTR MaLR 1 467 0 334 286 57 82 chr12 112197816 112198097 -32084392 - L1ME LINE L1 -464 5702 5442 1498 201 42 3 chr12 112198097 112198385 -32084104 - AluJo SINE Alu -13 299 1 334 286 57 82 chr12 112198385 112198681 -32083808 - L1ME LINE L1 -724 5442 5140 2209 219 78 88 chr12 112198709 112199335 -32083154 + MLT1E2 LTR MaLR 3 624 -2 237 173 0 107 chr12 112199419 112199494 -32082995 + MER106A DNA MER1_type 1 67 -169 200 154 19 0 chr12 112199514 112199566 -32082923 + (TA)n Simple_repeat Simple_repeat 2 54 0 1244 121 0 0 chr12 112199759 112199932 -32082557 - AluSx SINE Alu -137 175 3 3187 206 55 49 chr12 112199932 112200136 -32082353 + Charlie6 DNA MER1_type 573 774 -2726 1405 188 59 42 chr12 112200136 112200492 -32081997 + MLT1A1 LTR MaLR 3 364 -1 3187 206 55 49 chr12 112200492 112201118 -32081371 + Charlie6 DNA MER1_type 774 1408 -2092 282 125 196 0 chr12 112201107 112201163 -32081326 - Charlie6 DNA MER1_type -2066 1434 1368 * 865 223 74 37 chr12 112201211 112201462 -32081027 - L1ME1 LINE L1 -5 6161 5898 1819 118 5 170 chr12 112201462 112201879 -32080610 + MER7A DNA MER2_type 1 346 0 865 223 74 37 chr12 112201879 112201896 -32080593 - L1ME1 LINE L1 -268 5898 5883 702 257 111 41 chr12 112201913 112202255 -32080234 + MLT1H1 LTR MaLR 185 550 -5 240 293 27 0 chr12 112202593 112202668 -32079821 - MER5A DNA MER1_type -28 161 85 963 217 70 89 chr12 112203708 112203921 -32078568 - L1ME3A LINE L1 -5 6165 5950 2321 107 3 0 chr12 112203921 112204220 -32078269 + AluSx SINE Alu 1 300 -12 963 217 70 89 chr12 112204220 112204390 -32078099 - L1ME3A LINE L1 -220 5950 5790 1387 147 86 79 chr12 112204390 112204682 -32077807 - AluJb SINE Alu -16 296 3 963 217 70 89 chr12 112204682 112204752 -32077737 - L1ME3A LINE L1 -380 5790 5720 233 258 49 12 chr12 112204802 112204893 -32077596 + MIR SINE MIR 38 131 -77 267 256 151 0 chr12 112204928 112205014 -32077475 - L2 LINE L2 -4 3309 3211 245 347 48 8 chr12 112205233 112205357 -32077132 + L2 LINE L2 3128 3256 -16 584 228 31 52 chr12 112205656 112205875 -32076614 - MIR SINE MIR -12 250 34 377 243 131 0 chr12 112206218 112206325 -32076164 - L2 LINE L2 0 3313 3193 4049 137 25 42 chr12 112206336 112206482 -32076007 - MER50 LTR ERV1 -23 711 564 2552 73 0 6 chr12 112206482 112206796 -32075693 + AluSx SINE Alu 1 312 0 4049 137 25 42 chr12 112206796 112207372 -32075117 - MER50 LTR ERV1 -170 564 1 544 265 24 76 chr12 112207710 112207959 -32074530 + L2 LINE L2 2228 2463 -851 1161 246 58 79 chr12 112208011 112208479 -32074010 - MLT1J LTR MaLR -30 481 24 557 305 75 23 chr12 112208533 112208838 -32073651 + L2 LINE L2 2813 3133 -180 2640 208 55 18 chr12 112208892 112209545 -32072944 + MER50 LTR ERV1 1 677 -57 7248 30 7 12 chr12 112209738 112210627 -32071862 + L1PA4 LINE L1 5270 6153 -2 1104 244 53 24 chr12 112210627 112210959 -32071530 - HsTC2 DNA Tc2 -131 1767 1247 303 256 111 0 chr12 112210950 112211040 -32071449 - HsTC2 DNA Tc2 -1760 138 39 * 254 312 106 7 chr12 112212232 112212373 -32070116 - L1MC/D LINE L1 -1986 5822 5668 249 229 177 21 chr12 112212414 112212510 -32069979 - MLT1L LTR MaLR -336 279 169 286 174 14 43 chr12 112212536 112212605 -32069884 + L2 LINE L2 3247 3313 0 1681 182 50 0 chr12 112212975 112213272 -32069217 - AluJo SINE Alu 0 312 1 909 162 0 0 chr12 112213434 112213607 -32068882 + (TGG)n Simple_repeat Simple_repeat 1 173 0 581 188 24 73 chr12 112213607 112213638 -32068851 - MIR SINE MIR -1 261 230 2124 92 42 3 chr12 112213638 112213944 -32068545 + AluSq SINE Alu 1 317 0 581 188 24 73 chr12 112213944 112214074 -32068415 - MIR SINE MIR -32 230 105 453 242 120 76 chr12 112214253 112214546 -32067943 - MLT1I LTR MaLR -19 390 91 2352 155 5 5 chr12 112214656 112215030 -32067459 - MLT1A2 LTR MaLR 0 374 1 1949 212 123 5 chr12 112215107 112215556 -32066933 + MLT1D LTR MaLR 2 503 -2 1699 171 3 40 chr12 112215610 112215908 -32066581 + AluJb SINE Alu 1 287 -25 2208 114 0 0 chr12 112215927 112216228 -32066261 + AluSg SINE Alu 1 301 0 902 203 0 6 chr12 112216282 112216445 -32066044 + FRAM SINE Alu 5 166 -10 276 243 14 111 chr12 112216462 112216606 -32065883 - MIR SINE MIR -95 167 38 191 227 93 40 chr12 112216605 112216680 -32065809 - MIR SINE MIR -92 116 38 * 536 305 0 0 chr12 112217536 112217703 -32064786 + L1M4 LINE L1 3375 3541 -2605 1017 139 11 33 chr12 112217958 112218138 -32064351 + MER20 DNA MER1_type 24 199 -20 2104 115 70 17 chr12 112218147 112218503 -32063986 - THE1C LTR MaLR 0 375 1 498 304 62 29 chr12 112218553 112218796 -32063693 - MIR SINE MIR 0 262 12 198 327 28 0 chr12 112218906 112219013 -32063476 + L2 LINE L2 2148 2257 -1057 360 297 46 29 chr12 112219096 112219271 -32063218 + L2 LINE L2 3095 3272 0 954 199 178 25 chr12 112219563 112219844 -32062645 - MER33 DNA MER1_type 0 324 1 21 0 0 0 chr12 112219907 112219928 -32062561 + AT_rich Low_complexity Low_complexity 1 21 0 1701 141 24 62 chr12 112219931 112220222 -32062267 - AluJo SINE Alu -32 280 1 198 0 0 0 chr12 112220341 112220363 -32062126 + (CA)n Simple_repeat Simple_repeat 2 23 0 251 288 0 0 chr12 112220482 112220548 -32061941 - MIR SINE MIR -106 156 91 324 48 0 0 chr12 112220725 112220767 -32061722 + (TGG)n Simple_repeat Simple_repeat 1 42 0 227 317 0 59 chr12 112220767 112220868 -32061621 - L2 LINE L2 -221 3051 2957 315 130 0 0 chr12 112221854 112221908 -32060581 + (CCA)n Simple_repeat Simple_repeat 3 56 0 192 358 74 62 chr12 112223205 112223381 -32059108 - L2 LINE L2 -86 3186 3009 497 215 16 25 chr12 112223389 112223510 -32058979 - L2 LINE L2 -1 3312 3193 297 0 0 0 chr12 112223609 112223642 -32058847 + (TA)n Simple_repeat Simple_repeat 1 33 0 225 132 0 0 chr12 112223729 112223767 -32058722 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 54 0 0 chr12 112223949 112223986 -32058503 + AT_rich Low_complexity Low_complexity 1 37 0 330 145 72 0 chr12 112224005 112224171 -32058318 + (TA)n Simple_repeat Simple_repeat 1 178 0 29 28 0 0 chr12 112224171 112224207 -32058282 + AT_rich Low_complexity Low_complexity 1 36 0 219 200 50 10 chr12 112224255 112224355 -32058134 + (TA)n Simple_repeat Simple_repeat 1 104 0 823 266 134 29 chr12 112224355 112224773 -32057716 - L1ME4a LINE L1 -157 5964 5503 366 279 127 6 chr12 112225215 112225380 -32057109 - MIR SINE MIR -57 205 21 2076 136 58 9 chr12 112225469 112225815 -32056674 + MLT1A1 LTR MaLR 3 365 0 183 42 0 0 chr12 112226194 112226218 -32056271 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 67 0 0 chr12 112226279 112226324 -32056165 + AT_rich Low_complexity Low_complexity 1 45 0 496 239 76 32 chr12 112227242 112227389 -32055100 - MLT1K LTR MaLR -186 429 257 502 252 25 0 chr12 112227389 112227508 -32054981 + L2 LINE L2 3192 3313 0 21 36 0 0 chr12 112227647 112227675 -32054814 + AT_rich Low_complexity Low_complexity 1 28 0 551 227 128 17 chr12 112227932 112228104 -32054385 - MLT1J LTR MaLR -320 191 1 1691 210 74 42 chr12 112228214 112228307 -32054182 + MLT1C LTR MaLR 21 110 -357 2390 83 0 7 chr12 112228307 112228607 -32053882 + AluSg SINE Alu 3 300 -10 1691 210 74 42 chr12 112228607 112228946 -32053543 + MLT1C LTR MaLR 110 467 0 240 282 47 0 chr12 112228997 112229103 -32053386 + MIR SINE MIR 36 148 -60 323 293 108 27 chr12 112229143 112229365 -32053124 + L2 LINE L2 2738 2977 -337 393 164 0 0 chr12 112229776 112229849 -32052640 + CT-rich Low_complexity Low_complexity 4 76 0 1803 96 19 50 chr12 112229834 112230118 -32052371 - AluSq SINE Alu -18 295 41 275 292 303 11 chr12 112230636 112230821 -32051668 - MIR SINE MIR 0 262 24 2218 95 0 0 chr12 112231219 112231513 -32050976 - AluSx SINE Alu -18 294 1 355 250 102 0 chr12 112232295 112232403 -32050086 - MER103 DNA DNA -45 121 3 323 274 60 0 chr12 112232431 112232515 -32049974 - L2 LINE L2 -1 3271 3183 441 240 13 73 chr12 112232527 112232677 -32049812 + MIR SINE MIR 121 261 -1 224 291 43 86 chr12 112232677 112232887 -32049602 - L2 LINE L2 -115 3198 2998 229 277 24 24 chr12 112233191 112233274 -32049215 - MER5A DNA MER1_type -104 85 3 339 181 0 0 chr12 112233990 112234062 -32048427 + (TG)n Simple_repeat Simple_repeat 1 72 0 263 128 0 0 chr12 112234704 112234743 -32047746 - MIR3 SINE MIR 0 208 170 196 256 0 0 chr12 112234710 112234749 -32047740 - L3b LINE CR1 -2 1581 1543 * 330 270 109 52 chr12 112235188 112235256 -32047233 - MIR SINE MIR 0 262 199 1828 167 7 0 chr12 112235256 112235562 -32046927 - AluJo SINE Alu -3 309 2 330 270 109 52 chr12 112235562 112235667 -32046822 - MIR SINE MIR -63 199 79 1154 130 0 0 chr12 112235905 112236074 -32046415 - FRAM SINE Alu -8 168 1 1032 174 0 0 chr12 112236336 112236772 -32045717 + (TG)n Simple_repeat Simple_repeat 1 436 0 1631 109 87 143 chr12 112236808 112237021 -32045468 - MLT1B LTR MaLR 0 390 167 2188 111 0 6 chr12 112237021 112237336 -32045153 - AluSq SINE Alu 0 313 1 1631 109 87 143 chr12 112237336 112237472 -32045017 - MLT1B LTR MaLR -223 167 64 1980 90 52 0 chr12 112237472 112237762 -32044727 - AluSc SINE Alu 0 304 1 1631 109 87 143 chr12 112237762 112237823 -32044666 - MLT1B LTR MaLR -326 64 1 650 291 141 43 chr12 112239364 112239451 -32043038 + L2 LINE L2 2650 2727 -586 1411 176 15 52 chr12 112239451 112239775 -32042714 - AluJo SINE Alu 0 312 1 650 291 141 43 chr12 112239775 112240096 -32042393 + L2 LINE L2 2727 3015 -298 1922 109 0 0 chr12 112240096 112240362 -32042127 - AluY SINE Alu -13 298 33 650 291 141 43 chr12 112240362 112240572 -32041917 + L2 LINE L2 3015 3313 0 2193 92 0 3 chr12 112240752 112241046 -32041443 + AluSg SINE Alu 3 295 -15 1501 178 62 0 chr12 112241828 112242104 -32040385 - AluJo SINE Alu -19 293 1 211 212 61 45 chr12 112242359 112242425 -32040064 + L2 LINE L2 640 706 -2608 24 0 0 0 chr12 112242778 112242802 -32039687 + AT_rich Low_complexity Low_complexity 1 24 0 3917 187 5 19 chr12 112242806 112243551 -32038938 - L1MB2 LINE L1 -7 6164 5430 773 241 104 14 chr12 112243615 112243835 -32038654 - MIR SINE MIR -2 260 21 2134 166 0 50 chr12 112245132 112245535 -32036954 + MLT1B LTR MaLR 8 390 0 2058 110 3 35 chr12 112245907 112246224 -32036265 - AluSx SINE Alu -5 307 1 205 287 75 53 chr12 112248327 112248421 -32034068 - MIR SINE MIR -97 165 70 374 270 58 52 chr12 112249493 112249667 -32032822 + MIR SINE MIR 52 226 -36 1721 150 3 58 chr12 112250017 112250344 -32032145 - AluJo SINE Alu -1 311 3 526 247 162 0 chr12 112250872 112251026 -32031463 - MER5A DNA MER1_type 0 189 11 261 256 3 0 chr12 112251178 112251242 -32031247 + MIR SINE MIR 44 105 -103 479 246 18 96 chr12 112251345 112251565 -32030924 + MIR SINE MIR 45 247 -15 422 121 0 0 chr12 112252604 112252670 -32029819 - L1PA8 LINE L1 -9 6163 6098 258 287 21 53 chr12 112252681 112252775 -32029714 - MIR SINE MIR -52 210 120 223 239 75 0 chr12 112252801 112252868 -32029621 - L2 LINE L2 -2 3311 3240 410 309 86 30 chr12 112253072 112253305 -32029184 + MIR SINE MIR 17 262 0 214 203 125 0 chr12 112253327 112253391 -32029098 + L2 LINE L2 2997 3068 -245 674 131 0 9 chr12 112254473 112254580 -32027909 + FLAM_A SINE Alu 10 115 -27 272 254 22 97 chr12 112254583 112254717 -32027772 - MER5B DNA MER1_type -43 135 12 751 200 45 55 chr12 112254954 112255174 -32027315 + MER20 DNA MER1_type 1 218 -1 559 188 0 0 chr12 112255216 112255311 -32027178 - MER5A DNA MER1_type -83 106 12 592 256 117 39 chr12 112255311 112255541 -32026948 + MIR SINE MIR 4 251 -11 613 253 39 0 chr12 112256066 112256220 -32026269 + MIR SINE MIR 52 211 -51 198 274 211 0 chr12 112256264 112256359 -32026130 - MER5A DNA MER1_type -5 184 70 431 289 60 20 chr12 112257174 112257323 -32025166 + MIR SINE MIR 9 163 -99 582 261 43 79 chr12 112257413 112257742 -32024747 - MLT1H LTR MaLR -182 367 51 191 274 35 62 chr12 112257894 112258007 -32024482 + L2 LINE L2 2887 2996 -276 692 251 38 55 chr12 112258009 112258244 -32024245 + MIR SINE MIR 31 261 -1 383 163 12 0 chr12 112258671 112258751 -32023738 + (CCA)n Simple_repeat Simple_repeat 2 82 0 1984 126 86 21 chr12 112258852 112259177 -32023312 + THE1B LTR MaLR 19 364 0 219 313 16 16 chr12 112259288 112259352 -32023137 + L2 LINE L2 3241 3304 -9 791 257 148 55 chr12 112259578 112259944 -32022545 - MLT1J2 LTR MaLR 0 450 51 288 324 28 19 chr12 112261456 112261564 -32020925 + MIR SINE MIR 84 192 -70 1352 139 0 28 chr12 112261609 112261825 -32020664 + MER2 DNA MER2_type 1 210 -135 271 203 0 62 chr12 112262134 112262198 -32020291 - L2 LINE L2 -4 3268 3209 516 238 40 0 chr12 112262264 112262390 -32020099 - MER94 DNA DNA 0 134 4 231 186 0 0 chr12 112262900 112262943 -32019546 + G-rich Low_complexity Low_complexity 1 43 0 434 114 14 0 chr12 112263672 112263742 -32018747 - MSTB1 LTR MaLR 0 432 362 1815 159 118 9 chr12 112264318 112264658 -32017831 - MSTB1 LTR MaLR -55 377 1 316 171 11 80 chr12 112264666 112264754 -32017735 + MIR SINE MIR 111 192 -70 1648 197 13 13 chr12 112264826 112265141 -32017348 + MER58B DNA MER1_type 27 341 0 234 0 0 0 chr12 112265282 112265308 -32017181 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 593 254 165 49 chr12 112265310 112265680 -32016809 - L2 LINE L2 -9 3304 2892 907 163 116 6 chr12 112265859 112266031 -32016458 - MER20 DNA MER1_type -8 211 21 370 274 132 20 chr12 112266747 112266944 -32015545 - MIR SINE MIR -3 259 41 261 240 31 31 chr12 112267312 112267408 -32015081 - MER5A DNA MER1_type -80 109 14 1868 121 21 3 chr12 112267796 112268086 -32014403 + AluJo SINE Alu 11 305 -7 249 108 0 0 chr12 112268728 112268765 -32013724 + (T)n Simple_repeat Simple_repeat 1 37 0 414 0 0 0 chr12 112268847 112268893 -32013596 + (TG)n Simple_repeat Simple_repeat 2 47 0 180 341 37 12 chr12 112269948 112270030 -32012459 + MIR SINE MIR 61 144 -118 210 37 0 0 chr12 112270286 112270313 -32012176 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 451 283 112 7 chr12 112271213 112271365 -32011124 - MIR3 SINE MIR -11 197 30 275 298 106 69 chr12 112271982 112272200 -32010289 + MIR SINE MIR 18 243 -19 320 208 14 132 chr12 112272267 112272411 -32010078 + MER5B DNA MER1_type 5 131 -47 698 168 0 0 chr12 112272460 112272567 -32009922 - FLAM_C SINE Alu -34 109 3 299 266 25 48 chr12 112273297 112273398 -32009091 + MIR SINE MIR 38 146 -62 219 114 0 0 chr12 112273808 112273843 -32008646 + (T)n Simple_repeat Simple_repeat 1 35 0 821 176 6 0 chr12 112274301 112274477 -32008012 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 380 280 47 0 chr12 112274482 112274589 -32007900 - L2 LINE L2 -9 3304 3193 680 171 38 142 chr12 112274881 112275092 -32007397 - AluJo SINE Alu -3 309 121 911 268 37 16 chr12 112275244 112275487 -32007002 + MIR SINE MIR 15 262 0 227 30 0 30 chr12 112276003 112276036 -32006453 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 846 128 88 34 chr12 112276840 112276988 -32005501 + MLT1B LTR MaLR 1 156 -234 727 89 73 40 chr12 112276993 112277117 -32005372 + MLT1B LTR MaLR 263 390 0 2010 111 72 33 chr12 112277504 112277865 -32004624 - THE1C LTR MaLR 0 375 1 182 287 230 0 chr12 112277959 112278046 -32004443 - MIR SINE MIR -5 257 151 308 245 326 0 chr12 112279092 112279239 -32003250 + MIR SINE MIR 31 225 -37 1590 247 61 28 chr12 112279248 112279661 -32002828 - MLT1J LTR MaLR -19 492 60 1950 126 0 3 chr12 112279661 112279947 -32002542 + AluSx SINE Alu 1 285 -27 1590 247 61 28 chr12 112279947 112280006 -32002483 - MLT1J LTR MaLR -451 60 4 216 200 0 0 chr12 112280036 112280086 -32002403 + (CAT)n Simple_repeat Simple_repeat 2 51 0 1511 162 96 4 chr12 112280997 112281269 -32001220 + AluJo SINE Alu 5 301 -1 448 340 19 6 chr12 112281695 112281851 -32000638 - MIR SINE MIR -99 163 6 191 267 60 129 chr12 112281848 112282080 -32000409 + L2 LINE L2 2807 3022 -250 * 462 170 113 9 chr12 112282113 112282219 -32000270 + LTR55 LTR ERV 2 118 -430 662 250 34 0 chr12 112282234 112282382 -32000107 - MER21B LTR ERV1 -396 467 315 * 1012 187 192 56 chr12 112282355 112282714 -31999775 + LTR55 LTR ERV 82 489 -59 899 116 0 0 chr12 112282719 112282848 -31999641 - FLAM_A SINE Alu -4 138 10 210 91 0 0 chr12 112283369 112283402 -31999087 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 350 167 39 51 chr12 112286166 112286244 -31996245 + MER5A DNA MER1_type 9 85 -104 335 252 219 0 chr12 112286419 112286542 -31995947 + MIR SINE MIR 113 262 0 362 327 32 3 chr12 112287175 112287284 -31995205 + MIR SINE MIR 3 112 -96 572 198 15 26 chr12 112287360 112287476 -31995013 - L1MC2 LINE L1 0 7770 7654 1633 168 3 7 chr12 112287476 112287768 -31994721 - AluJo SINE Alu -11 301 11 572 198 15 26 chr12 112287768 112288316 -31994173 - L1MC2 LINE L1 -116 7654 6136 768 236 19 61 chr12 112288649 112288861 -31993628 - MIR SINE MIR 0 262 60 571 205 114 30 chr12 112288970 112289136 -31993353 + MIR SINE MIR 21 200 -62 950 183 95 135 chr12 112289520 112289624 -31992865 + MER2 DNA MER2_type 1 108 -237 964 129 0 0 chr12 112289624 112289756 -31992733 - FLAM_C SINE Alu -1 132 1 950 183 95 135 chr12 112289756 112290000 -31992489 + MER2 DNA MER2_type 108 335 -10 22 0 0 0 chr12 112290081 112290103 -31992386 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr12 112290890 112290914 -31991575 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 270 0 0 0 chr12 112290913 112290943 -31991546 + (CA)n Simple_repeat Simple_repeat 1 30 0 1040 122 0 6 chr12 112291560 112291716 -31990773 + AluSg/x SINE Alu 131 285 -25 2304 134 3 14 chr12 112291954 112292320 -31990169 + L1MB3 LINE L1 5561 5922 -261 2689 143 17 2 chr12 112292743 112293163 -31989326 - MSTB LTR MaLR 0 426 1 1629 160 26 16 chr12 112293629 112293966 -31988523 + AluJo SINE Alu 1 340 0 2021 106 34 0 chr12 112294217 112294509 -31987980 + AluSx SINE Alu 1 302 -10 672 276 42 9 chr12 112295383 112295597 -31986892 - MLT1A1 LTR MaLR 0 365 145 619 248 0 8 chr12 112295606 112295735 -31986754 - AluSg/x SINE Alu -8 302 175 738 163 41 0 chr12 112295744 112295867 -31986622 - MLT1A1 LTR MaLR -206 159 32 1776 134 36 0 chr12 112295984 112296260 -31986229 + AluJo SINE Alu 12 297 -15 599 270 61 6 chr12 112297441 112297604 -31984885 + MIR SINE MIR 23 194 -68 268 281 0 0 chr12 112297824 112297881 -31984608 + MLT1L LTR MaLR 559 615 0 228 267 48 95 chr12 112297890 112297995 -31984494 + L2 LINE L2 3150 3249 -23 238 347 0 0 chr12 112298022 112298055 -31984434 + GA-rich Low_complexity Low_complexity 2 34 -42 1012 224 35 0 chr12 112298055 112298256 -31984233 + MER63A DNA MER1_type 2 209 -1 238 347 0 0 chr12 112298256 112298297 -31984192 + GA-rich Low_complexity Low_complexity 33 76 0 22 0 0 0 chr12 112298297 112298319 -31984170 + AT_rich Low_complexity Low_complexity 1 22 0 1557 142 4 8 chr12 112299440 112299694 -31982795 + AluJo SINE Alu 39 291 -21 1038 215 28 0 chr12 112300187 112300401 -31982088 - MER58A DNA MER1_type 0 224 5 531 234 186 7 chr12 112301809 112301954 -31980535 - MER5A DNA MER1_type -6 183 13 333 234 151 124 chr12 112302013 112302073 -31980416 + L2 LINE L2 2923 2980 -333 2063 129 3 0 chr12 112302073 112302382 -31980107 - AluJb SINE Alu 0 312 3 333 234 151 124 chr12 112302382 112302692 -31979797 + L2 LINE L2 2980 3303 -10 596 221 54 7 chr12 112302841 112302990 -31979499 + MIR SINE MIR 106 261 -1 226 226 19 0 chr12 112302993 112303046 -31979443 + (ATGGTG)n Simple_repeat Simple_repeat 2 55 0 197 295 16 16 chr12 112303068 112303129 -31979360 - L2 LINE L2 -219 3053 2993 1337 226 124 24 chr12 112303141 112303164 -31979325 - MLT1E LTR MaLR 0 576 557 1748 152 177 19 chr12 112303164 112303347 -31979142 - MSTA LTR MaLR -2 426 273 255 31 0 0 chr12 112303347 112303379 -31979110 + (GA)n Simple_repeat Simple_repeat 1 32 0 1748 152 177 19 chr12 112303379 112303563 -31978926 - MSTA LTR MaLR -155 273 1 1337 226 124 24 chr12 112303563 112304045 -31978444 - MLT1E LTR MaLR -19 557 1 263 135 0 0 chr12 112304074 112304126 -31978363 - L2 LINE L2 -300 2972 2921 280 342 66 13 chr12 112304182 112304334 -31978155 + MIR3 SINE MIR 1 160 -48 244 229 0 0 chr12 112304773 112304821 -31977668 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 238 262 78 78 chr12 112305310 112305451 -31977038 + MIR3 SINE MIR 34 174 -34 255 265 15 0 chr12 112305994 112306062 -31976427 - MIR SINE MIR -117 145 77 1901 152 35 123 chr12 112306149 112306471 -31976018 - MLT1C LTR MaLR 0 467 205 2330 93 0 0 chr12 112306471 112306772 -31975717 + AluSx SINE Alu 1 301 -11 1901 152 35 123 chr12 112306772 112306961 -31975528 - MLT1C LTR MaLR -262 205 1 259 343 37 0 chr12 112307110 112307218 -31975271 - L2 LINE L2 -491 2823 2712 1809 127 3 7 chr12 112308328 112308611 -31973878 - AluSx SINE Alu -30 282 1 487 222 34 51 chr12 112308961 112309078 -31973411 + L2 LINE L2 3180 3294 -19 1105 287 58 51 chr12 112309080 112309233 -31973256 - L2 LINE L2 0 3313 3162 2193 98 0 0 chr12 112309233 112309551 -31972938 + AluSq SINE Alu 1 318 0 1105 287 58 51 chr12 112309551 112309639 -31972850 - L2 LINE L2 -151 3162 3076 559 74 0 25 chr12 112309639 112309720 -31972769 - MADE1 DNA Mariner -1 79 1 1105 287 58 51 chr12 112309720 112309943 -31972546 - L2 LINE L2 -237 3076 2844 304 336 44 9 chr12 112310359 112310472 -31972017 + MIR SINE MIR 16 132 -76 186 283 195 35 chr12 112310552 112310665 -31971824 + L2 LINE L2 3142 3272 0 332 322 48 7 chr12 112310751 112310897 -31971592 + MIR SINE MIR 40 191 -71 245 244 163 12 chr12 112310970 112311056 -31971433 - MLT1J LTR MaLR -82 429 331 455 269 83 6 chr12 112311160 112311316 -31971173 - MLT1J LTR MaLR -343 168 1 369 294 0 10 chr12 112311447 112311549 -31970940 - MIR SINE MIR -15 247 147 1097 66 0 0 chr12 112311555 112311692 -31970797 - AluSc SINE Alu -14 295 159 188 263 35 18 chr12 112311711 112311768 -31970721 - MIR SINE MIR -187 75 18 194 248 157 58 chr12 112312412 112312533 -31969956 - MIR3 SINE MIR -15 193 61 478 240 13 67 chr12 112312695 112312783 -31969706 + MIR SINE MIR 103 181 -81 1919 105 14 10 chr12 112312783 112313099 -31969390 - AluSx SINE Alu 0 312 1 478 240 13 67 chr12 112313099 112313160 -31969329 + MIR SINE MIR 181 244 -18 187 217 94 75 chr12 112313218 112313324 -31969165 + L2 LINE L2 2435 2542 -772 531 263 48 48 chr12 112314135 112314321 -31968168 + MIR SINE MIR 76 261 -1 2620 113 3 3 chr12 112314473 112314837 -31967652 - THE1B LTR MaLR 0 364 1 2298 104 0 0 chr12 112315020 112315328 -31967161 - AluSx SINE Alu -4 308 1 203 250 98 54 chr12 112315882 112315994 -31966495 + MIR SINE MIR 69 185 -77 338 233 12 35 chr12 112316536 112316622 -31965867 - MER117 DNA MER1_type -36 161 78 1669 159 126 6 chr12 112317471 112317797 -31964692 + MLT1A1 LTR MaLR 1 365 0 899 201 109 0 chr12 112318417 112318601 -31963888 - MIR SINE MIR -57 205 2 886 189 73 16 chr12 112318737 112318928 -31963561 - MIR SINE MIR -32 230 29 234 258 152 0 chr12 112320309 112320375 -31962114 - L2 LINE L2 -37 3276 3201 465 306 45 30 chr12 112320405 112320453 -31962036 - MIR SINE MIR 0 262 216 2100 112 0 0 chr12 112320453 112320749 -31961740 - AluSx SINE Alu -15 297 2 465 306 45 30 chr12 112320749 112320899 -31961590 - MIR SINE MIR -46 216 61 2072 108 7 0 chr12 112320924 112321220 -31961269 - AluSp SINE Alu -14 299 2 8586 44 2 1 chr12 112321515 112322585 -31959904 - L1PA4 LINE L1 -2036 4110 3040 10877 31 7 0 chr12 112322591 112324627 -31957862 + L1PA4 LINE L1 4108 6154 -1 1882 145 3 7 chr12 112324669 112324965 -31957524 + AluSx SINE Alu 1 295 -17 262 231 0 0 chr12 112325050 112325102 -31957387 - L2 LINE L2 -4 3268 3217 501 280 45 13 chr12 112325920 112326077 -31956412 - MIR SINE MIR -51 211 50 334 280 53 30 chr12 112326487 112326619 -31955870 + MER5A DNA MER1_type 43 177 -12 243 0 0 0 chr12 112326994 112327021 -31955468 + (T)n Simple_repeat Simple_repeat 1 27 0 651 36 12 0 chr12 112327035 112327118 -31955371 - L1MB3 LINE L1 -12 6171 6088 333 296 64 40 chr12 112327847 112327972 -31954517 - MIR3 SINE MIR -7 201 74 270 326 52 22 chr12 112329030 112329165 -31953324 + MIR SINE MIR 9 147 -115 317 197 16 0 chr12 112329181 112329242 -31953247 + MIR SINE MIR 86 147 -61 810 145 46 0 chr12 112330517 112330648 -31951841 - FLAM_C SINE Alu -5 138 2 632 297 55 14 chr12 112331889 112332108 -31950381 - MIR SINE MIR -32 230 3 390 206 186 0 chr12 112332413 112332515 -31949974 + MIR SINE MIR 63 183 -79 2161 91 0 3 chr12 112333479 112333766 -31948723 - AluSx SINE Alu -22 290 5 1911 146 10 0 chr12 112334006 112334314 -31948175 - AluSx SINE Alu -1 311 1 386 276 26 46 chr12 112334537 112334689 -31947800 - L1ME LINE L1 -378 5743 5595 769 210 25 0 chr12 112335240 112335402 -31947087 - MIR SINE MIR -15 247 82 1594 199 121 24 chr12 112335417 112335838 -31946651 - MLT1C LTR MaLR 0 467 6 1561 169 3 7 chr12 112337144 112337456 -31945033 - AluJb SINE Alu 0 311 1 351 0 0 0 chr12 112337515 112337554 -31944935 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 363 94 0 0 chr12 112337597 112337650 -31944839 - Alu SINE Alu -1 300 248 1070 232 41 0 chr12 112337834 112338080 -31944409 - L1MB7 LINE L1 -1 6183 5928 2305 170 89 38 chr12 112338593 112338876 -31943613 + L1MB3 LINE L1 5664 5984 -199 1721 176 3 7 chr12 112338876 112339178 -31943311 + AluJb SINE Alu 1 301 -11 2305 170 89 38 chr12 112339178 112339389 -31943100 + L1MB3 LINE L1 5984 6183 0 2004 74 4 0 chr12 112339514 112339800 -31942689 + AluSx SINE Alu 29 315 0 189 301 120 45 chr12 112340011 112340144 -31942345 + MER5A DNA MER1_type 43 185 -4 1096 268 185 19 chr12 112340207 112340398 -31942091 - L2 LINE L2 0 3313 3155 1913 131 7 7 chr12 112340398 112340695 -31941794 + AluSx SINE Alu 1 297 -15 1096 268 185 19 chr12 112340695 112341335 -31941154 - L2 LINE L2 -158 3155 2355 412 313 27 27 chr12 112341674 112341821 -31940668 + MIR3 SINE MIR 19 165 -43 507 178 0 0 chr12 112341843 112341944 -31940545 + C-rich Low_complexity Low_complexity 2 102 0 2212 169 6 8 chr12 112342010 112342376 -31940113 - MLT1A1 LTR MaLR 0 365 1 187 146 125 21 chr12 112342454 112342502 -31939987 + MIR3 SINE MIR 125 177 -31 547 233 53 0 chr12 112343420 112343553 -31938936 + MIR SINE MIR 49 188 -74 235 283 67 0 chr12 112343838 112343898 -31938591 - L2 LINE L2 -1 3271 3208 219 331 51 23 chr12 112343893 112344068 -31938421 + MIR3 SINE MIR 8 187 -21 * 1631 162 40 7 chr12 112344432 112344734 -31937755 + AluJb SINE Alu 1 312 0 483 267 73 13 chr12 112345280 112345430 -31937059 - MIR3 SINE MIR -16 192 34 370 305 147 16 chr12 112345435 112345625 -31936864 - MIR SINE MIR -11 251 37 556 234 9 0 chr12 112345653 112345764 -31936725 - MER81 DNA DNA -2 112 1 673 262 26 78 chr12 112346277 112346548 -31935941 + MIR SINE MIR 6 262 0 276 267 130 20 chr12 112346552 112346698 -31935791 + MIR3 SINE MIR 44 205 -3 206 171 73 0 chr12 112347334 112347375 -31935114 - L2 LINE L2 -6 3266 3223 316 258 0 0 chr12 112347419 112347485 -31935004 + L2 LINE L2 3248 3313 0 676 285 6 12 chr12 112347649 112347814 -31934675 + MIR SINE MIR 33 196 -66 336 188 0 171 chr12 112348271 112348388 -31934101 - MER5A DNA MER1_type -38 151 55 1141 213 146 13 chr12 112349541 112349842 -31932647 + MER58B DNA MER1_type 1 341 0 947 242 13 22 chr12 112350212 112350439 -31932050 - MIR SINE MIR -7 255 31 617 188 12 16 chr12 112350604 112350854 -31931635 + CT-rich Low_complexity Low_complexity 1 249 0 188 322 58 11 chr12 112350890 112350977 -31931512 - L2 LINE L2 -2 3311 3221 277 229 0 33 chr12 112353196 112353257 -31929232 + L2 LINE L2 3168 3226 -46 254 323 54 32 chr12 112353287 112353380 -31929109 + MIR SINE MIR 46 140 -122 440 315 43 30 chr12 112353463 112353640 -31928849 + MIR SINE MIR 6 184 -69 550 279 81 22 chr12 112354638 112354860 -31927629 - MIR SINE MIR -27 235 1 198 0 0 0 chr12 112354913 112354935 -31927554 + (A)n Simple_repeat Simple_repeat 1 22 0 1739 86 0 0 chr12 112355120 112355364 -31927125 + AluY SINE Alu 63 306 -5 21 0 0 0 chr12 112355924 112355945 -31926544 + GC_rich Low_complexity Low_complexity 1 21 0 247 224 0 53 chr12 112356078 112356154 -31926335 + GA-rich Low_complexity Low_complexity 1 72 0 619 270 88 10 chr12 112356156 112356360 -31926129 - MIR SINE MIR -6 256 37 1883 119 36 0 chr12 112356547 112356825 -31925664 + AluSx SINE Alu 1 288 -24 246 32 0 0 chr12 112356828 112356859 -31925630 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 192 275 90 72 chr12 112357323 112357604 -31924885 - L2 LINE L2 -247 3025 2741 372 265 6 118 chr12 112357635 112357744 -31924745 + MIR3 SINE MIR 56 141 -67 634 251 0 27 chr12 112357744 112357927 -31924562 - MER5B DNA MER1_type 0 178 1 372 265 6 118 chr12 112357927 112357987 -31924502 + MIR3 SINE MIR 141 206 -2 2932 116 2 7 chr12 112358005 112358427 -31924062 + MER83 LTR ERV1 14 433 -15 345 258 170 31 chr12 112359314 112359508 -31922981 + MIR SINE MIR 1 221 -41 500 30 15 0 chr12 112359808 112359874 -31922615 + (TG)n Simple_repeat Simple_repeat 2 68 0 280 342 139 16 chr12 112360560 112360747 -31921742 + MIR SINE MIR 50 259 -3 1465 196 16 6 chr12 112360832 112361149 -31921340 - MER33 DNA MER1_type -2 322 3 343 355 8 0 chr12 112361223 112361347 -31921142 + L2 LINE L2 3147 3271 -1 2581 151 47 16 chr12 112361925 112362375 -31920114 - MLT1C LTR MaLR 0 467 4 4565 133 23 49 chr12 112362442 112362704 -31919785 + L1MA9 LINE L1 5478 5745 -567 1631 120 94 11 chr12 112362704 112362979 -31919510 + AluJb SINE Alu 1 298 -14 4565 133 23 49 chr12 112362979 112363037 -31919452 + L1MA9 LINE L1 5745 5803 -509 189 0 0 0 chr12 112363037 112363058 -31919431 + (TAGA)n Simple_repeat Simple_repeat 2 22 0 4565 133 23 49 chr12 112363058 112363154 -31919335 + L1MA9 LINE L1 5803 5900 -412 2340 84 145 18 chr12 112363154 112363534 -31918955 + MSTA LTR MaLR 1 428 0 4565 133 23 49 chr12 112363534 112363971 -31918518 + L1MA9 LINE L1 5900 6311 -1 1417 163 32 4 chr12 112364033 112364285 -31918204 + AluJo SINE Alu 1 259 -53 32 26 0 0 chr12 112364289 112364328 -31918161 + AT_rich Low_complexity Low_complexity 1 39 0 378 214 0 0 chr12 112364391 112364480 -31918009 + (TG)n Simple_repeat Simple_repeat 2 90 0 757 281 16 48 chr12 112365256 112365408 -31917081 + MIR SINE MIR 1 143 -119 2093 122 0 3 chr12 112365408 112365711 -31916778 + AluSx SINE Alu 1 302 -10 757 281 16 48 chr12 112365711 112365807 -31916682 + MIR SINE MIR 143 241 -21 276 240 91 12 chr12 112365990 112366114 -31916375 + MER5B DNA MER1_type 1 176 -2 320 250 52 0 chr12 112366132 112366228 -31916261 + MER5A DNA MER1_type 9 109 -80 2279 81 0 3 chr12 112366231 112366527 -31915962 - AluSc SINE Alu -14 295 1 542 263 7 40 chr12 112367239 112367391 -31915098 + MIR SINE MIR 1 147 -115 758 300 60 9 chr12 112367423 112367656 -31914833 + MIR SINE MIR 8 252 -10 2196 105 0 10 chr12 112367657 112367970 -31914519 - AluSg SINE Alu 0 310 1 1758 164 0 34 chr12 112367975 112368298 -31914191 - AluJb SINE Alu 0 312 1 335 237 99 69 chr12 112368476 112368607 -31913882 - MIR SINE MIR -102 160 26 240 111 0 0 chr12 112370377 112370413 -31912076 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1574 181 99 28 chr12 112371169 112371586 -31910903 + MLT1D LTR MaLR 1 465 -2 872 172 30 12 chr12 112372424 112372593 -31909896 + MIR SINE MIR 65 236 -26 755 156 141 0 chr12 112372773 112372908 -31909581 - MER58B DNA MER1_type 0 341 188 324 326 79 11 chr12 112372941 112373119 -31909370 + MIR SINE MIR 36 225 -37 2109 79 7 33 chr12 112373193 112373496 -31908993 + AluSx SINE Alu 1 295 -17 411 297 9 0 chr12 112374332 112374443 -31908046 + MIR SINE MIR 134 245 -17 1745 194 50 13 chr12 112374475 112374851 -31907638 - MLT1B LTR MaLR 0 390 1 2209 99 0 0 chr12 112375067 112375369 -31907120 - AluSq SINE Alu -11 302 1 4567 117 33 8 chr12 112376315 112377044 -31905445 - L1MC1 LINE L1 0 6333 5587 189 107 0 0 chr12 112377413 112377441 -31905048 + (ATG)n Simple_repeat Simple_repeat 1 28 0 466 284 123 6 chr12 112377541 112377703 -31904786 - MIR SINE MIR -41 221 41 199 330 178 23 chr12 112378243 112378585 -31903904 + L2 LINE L2 2810 3204 -68 383 237 0 0 chr12 112378725 112378801 -31903688 + MIR SINE MIR 6 81 -181 879 216 117 10 chr12 112378801 112379065 -31903424 - MLT1E1 LTR MaLR 0 654 304 1096 132 23 96 chr12 112379097 112379174 -31903315 - Tigger5 DNA MER2_type 0 2323 2242 1969 132 0 7 chr12 112379174 112379462 -31903027 + AluSx SINE Alu 1 286 -26 1096 132 23 96 chr12 112379462 112379604 -31902885 - Tigger5 DNA MER2_type -81 2242 2120 1145 188 47 8 chr12 112379673 112379907 -31902582 - MLT1E1 LTR MaLR -411 243 1 718 224 121 6 chr12 112379907 112380072 -31902417 + MIR SINE MIR 77 260 -2 489 262 77 21 chr12 112381265 112381401 -31901088 + LTR16A1 LTR ERVL 211 367 -90 854 218 6 17 chr12 112381401 112381580 -31900909 - MER45A DNA AcHobo 0 178 2 489 262 77 21 chr12 112381580 112381676 -31900813 + LTR16A1 LTR ERVL 367 456 -1 213 293 66 92 chr12 112381684 112382001 -31900488 - L2 LINE L2 -44 3228 2920 2245 95 7 13 chr12 112383123 112383427 -31899062 - AluSx SINE Alu -10 302 1 384 221 135 10 chr12 112383722 112383826 -31898663 - L2 LINE L2 -5 3308 3192 492 211 141 35 chr12 112383853 112383995 -31898494 + L2 LINE L2 3155 3311 -2 219 69 0 0 chr12 112384645 112384674 -31897815 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 431 220 11 0 chr12 112384677 112384768 -31897721 + MER96 DNA MER1_type? 3 94 -81 398 272 40 8 chr12 112385780 112385905 -31896584 - MIR SINE MIR -106 156 28 1024 199 27 0 chr12 112386326 112386512 -31895977 + MIR SINE MIR 46 236 -26 2021 139 3 13 chr12 112386731 112387033 -31895456 + AluJb SINE Alu 1 299 -13 1340 24 0 30 chr12 112387035 112387202 -31895287 + L1PA4 LINE L1 5993 6154 -1 317 290 122 74 chr12 112387251 112387725 -31894764 + L2 LINE L2 2729 3246 -26 224 197 0 15 chr12 112387835 112387901 -31894588 + GA-rich Low_complexity Low_complexity 1 65 0 328 227 55 68 chr12 112387907 112388070 -31894419 - MER112 DNA MER1_type -83 177 17 379 151 62 130 chr12 112388977 112389123 -31893366 + L1M4 LINE L1 5678 5814 -360 1826 229 8 3 chr12 112389127 112389511 -31892978 - LTR31 LTR ERV1 -25 594 209 5122 160 49 31 chr12 112389511 112390486 -31892003 + L1MC2 LINE L1 5225 6222 -122 1880 209 126 77 chr12 112390486 112391274 -31891215 + LTR1B LTR ERV1 1 826 0 5122 160 49 31 chr12 112391274 112391400 -31891089 + L1MC2 LINE L1 6222 6344 0 687 272 142 43 chr12 112391483 112391575 -31890914 + L1ME4a LINE L1 5557 5638 -483 922 203 37 51 chr12 112391575 112391792 -31890697 + MER20 DNA MER1_type 4 217 -2 687 272 142 43 chr12 112391792 112392059 -31890430 + L1ME4a LINE L1 5638 5877 -244 1949 149 3 37 chr12 112392059 112392382 -31890107 - AluJb SINE Alu 0 312 1 687 272 142 43 chr12 112392382 112392535 -31889954 + L1ME4a LINE L1 5877 6121 0 1950 155 3 16 chr12 112392724 112393033 -31889456 + AluJo SINE Alu 1 305 -7 198 0 0 0 chr12 112393319 112393341 -31889148 + (CA)n Simple_repeat Simple_repeat 1 22 0 2519 70 10 0 chr12 112394627 112394929 -31887560 - AluY SINE Alu -6 305 1 447 234 55 23 chr12 112394997 112395125 -31887364 - MIR SINE MIR -85 177 46 268 318 42 108 chr12 112395824 112396134 -31886355 + L2 LINE L2 2840 3116 -156 1825 92 126 0 chr12 112396134 112396395 -31886094 + AluSc SINE Alu 1 294 -5 268 318 42 108 chr12 112396395 112396509 -31885980 + L2 LINE L2 3116 3236 -36 228 111 0 0 chr12 112396515 112396551 -31885938 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 382 281 45 0 chr12 112396552 112396641 -31885848 - L2 LINE L2 -13 3300 3208 323 265 29 66 chr12 112396714 112396850 -31885639 + L3 LINE CR1 1378 1508 -69 21 36 0 0 chr12 112397021 112397049 -31885440 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr12 112397199 112397229 -31885260 + AT_rich Low_complexity Low_complexity 1 30 0 1347 269 105 12 chr12 112397347 112397833 -31884656 - MLT1F LTR MaLR -7 535 5 397 227 75 101 chr12 112398137 112398210 -31884279 - LTR33 LTR ERVL -9 512 439 2180 120 13 13 chr12 112398210 112398511 -31883978 + AluSx SINE Alu 1 301 -11 397 227 75 101 chr12 112398511 112398828 -31883661 - LTR33 LTR ERVL -82 439 32 22 0 0 0 chr12 112398960 112398982 -31883507 + AT_rich Low_complexity Low_complexity 1 22 0 436 322 54 50 chr12 112398991 112399233 -31883256 - MIR SINE MIR 0 262 20 424 221 376 0 chr12 112400538 112400687 -31881802 + MIR SINE MIR 14 218 -44 300 286 59 17 chr12 112400886 112401005 -31881484 + L3 LINE CR1 832 955 -622 2368 172 14 0 chr12 112402664 112403101 -31879388 - L1MB2 LINE L1 0 6171 5729 622 251 32 85 chr12 112403294 112403541 -31878948 - MIR SINE MIR -1 261 28 289 185 222 0 chr12 112403752 112403833 -31878656 - L2 LINE L2 -6 3266 3168 332 235 12 12 chr12 112405634 112405715 -31876774 - MLT1J LTR MaLR -193 318 238 252 327 73 67 chr12 112406650 112406815 -31875674 - MIR SINE MIR -26 182 17 1419 182 47 71 chr12 112407862 112408242 -31874247 - MLT1B LTR MaLR -19 371 1 1175 261 4 0 chr12 112408423 112408672 -31873817 - MIR SINE MIR 0 262 13 613 192 66 42 chr12 112408867 112409034 -31873455 + MIR SINE MIR 48 218 -44 1411 167 30 46 chr12 112409135 112409366 -31873123 + MER33 DNA MER1_type 1 227 -2358 1955 136 0 52 chr12 112409366 112409674 -31872815 + AluJo SINE Alu 1 292 -20 1411 167 30 46 chr12 112409674 112409771 -31872718 + MER33 DNA MER1_type 227 324 0 420 244 11 11 chr12 112409795 112409885 -31872604 + L2 LINE L2 3173 3262 -10 442 299 58 7 chr12 112410765 112410919 -31871570 + MIR SINE MIR 47 208 -54 1341 159 7 113 chr12 112410927 112411068 -31871421 + AluJb SINE Alu 1 95 -217 189 0 0 0 chr12 112411068 112411089 -31871400 + (CTA)n Simple_repeat Simple_repeat 1 21 0 1341 159 7 113 chr12 112411089 112411249 -31871240 + AluJb SINE Alu 95 270 -42 201 244 0 0 chr12 112411790 112411831 -31870658 + L2 LINE L2 3216 3256 -16 590 241 52 42 chr12 112411875 112412066 -31870423 + MIR SINE MIR 20 212 -50 471 258 82 19 chr12 112413018 112413285 -31869204 - L1ME4a LINE L1 0 6121 5838 285 98 0 0 chr12 112413536 112413577 -31868912 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 331 320 53 47 chr12 112414841 112414991 -31867498 + MIR SINE MIR 32 182 -80 468 269 57 0 chr12 112415181 112415322 -31867167 + MIR SINE MIR 113 261 -1 2446 82 3 3 chr12 112415452 112415800 -31866689 - AluSc SINE Alu 0 348 1 235 271 106 24 chr12 112416606 112416691 -31865798 + L2 LINE L2 3171 3262 -10 520 294 45 6 chr12 112417286 112417463 -31865026 + MIR SINE MIR 34 217 -45 468 228 101 34 chr12 112417496 112417645 -31864844 + MER5B DNA MER1_type 19 177 -1 601 236 16 114 chr12 112417711 112417965 -31864524 + MIR SINE MIR 25 253 -9 216 317 73 0 chr12 112417963 112418045 -31864444 - MIR SINE MIR -49 213 126 * 387 297 40 20 chr12 112419320 112419468 -31863021 + MIR SINE MIR 16 166 -96 480 268 132 29 chr12 112419472 112419677 -31862812 + MIR SINE MIR 31 256 -6 630 198 9 7 chr12 112420154 112420612 -31861877 + (CA)n Simple_repeat Simple_repeat 1 459 0 384 303 191 0 chr12 112420975 112421137 -31861352 + MIR SINE MIR 33 225 -37 285 109 0 0 chr12 112421411 112421457 -31861032 + (TC)n Simple_repeat Simple_repeat 1 46 0 1243 218 201 17 chr12 112422589 112422998 -31859491 - MLT1D LTR MaLR -17 488 5 915 213 10 20 chr12 112423094 112423291 -31859198 + MIR SINE MIR 68 262 0 285 98 0 0 chr12 112423443 112423484 -31859005 + MIR SINE MIR 80 120 -142 787 234 69 65 chr12 112424007 112424268 -31858221 - MIR SINE MIR 0 262 1 357 180 259 43 chr12 112424533 112424672 -31857817 + MIR SINE MIR 81 249 -13 605 233 168 15 chr12 112425305 112425507 -31856982 + MIR SINE MIR 13 245 -17 256 300 139 28 chr12 112425485 112425665 -31856824 - MIR SINE MIR -34 228 29 * 1879 190 114 26 chr12 112425823 112426107 -31856382 - MLT1D LTR MaLR -1 504 162 2206 86 36 0 chr12 112426107 112426385 -31856104 - AluSc SINE Alu -21 288 1 1879 190 114 26 chr12 112426385 112426563 -31855926 - MLT1D LTR MaLR -343 162 1 238 320 139 0 chr12 112426735 112426857 -31855632 + MIR SINE MIR 124 262 0 800 275 130 12 chr12 112427491 112427836 -31854653 + L2 LINE L2 2819 3204 -109 349 316 29 50 chr12 112427982 112428121 -31854368 + L2 LINE L2 3168 3303 -10 403 186 255 0 chr12 112428127 112428229 -31854260 - MIR SINE MIR -22 240 113 320 255 155 25 chr12 112428452 112428613 -31853876 - MIR SINE MIR 0 262 81 457 287 60 27 chr12 112428774 112428924 -31853565 - MIR SINE MIR -85 177 23 416 282 145 36 chr12 112429727 112430189 -31852300 - L2 LINE L2 0 3313 2778 706 240 82 25 chr12 112430541 112430737 -31851752 + MIR SINE MIR 16 222 -40 1622 181 82 9 chr12 112430909 112431281 -31851208 + L1MB8 LINE L1 5774 6333 -1 581 162 0 30 chr12 112431335 112431434 -31851055 + AluJb SINE Alu 87 182 -130 2579 58 0 10 chr12 112431502 112431815 -31850674 - AluY SINE Alu -1 310 1 651 112 0 0 chr12 112433939 112434037 -31848452 + (TGGA)n Simple_repeat Simple_repeat 1 98 0 260 217 14 58 chr12 112434071 112434140 -31848349 + MIR SINE MIR 86 151 -111 267 93 0 0 chr12 112434204 112434247 -31848242 + (GTTTG)n Simple_repeat Simple_repeat 3 45 0 2165 101 0 17 chr12 112434248 112434535 -31847954 - AluSx SINE Alu -30 282 1 444 291 153 11 chr12 112435177 112435366 -31847123 + MIR SINE MIR 37 252 -10 1581 187 9 29 chr12 112435628 112435944 -31846545 + AluJo SINE Alu 1 310 -2 2340 118 0 0 chr12 112436329 112436642 -31845847 - AluSq SINE Alu 0 313 1 771 246 44 10 chr12 112437079 112437282 -31845207 - MIR SINE MIR -12 250 41 493 317 43 29 chr12 112437980 112438188 -31844301 - MIR SINE MIR -50 212 2 448 212 28 55 chr12 112438300 112438517 -31843972 + L1ME4a LINE L1 5647 5857 -264 584 140 21 0 chr12 112438537 112438630 -31843859 + FLAM_A SINE Alu 2 96 -46 396 282 70 70 chr12 112438657 112438884 -31843605 + L1ME4a LINE L1 5874 6100 -21 217 307 63 16 chr12 112439239 112439366 -31843123 - L2 LINE L2 -2 3270 3138 2080 131 3 10 chr12 112440238 112440544 -31841945 + AluJb SINE Alu 1 304 -8 236 324 118 0 chr12 112440769 112440871 -31841618 + MIR SINE MIR 30 143 -65 2201 111 0 7 chr12 112441184 112441482 -31841007 - AluSc SINE Alu -13 296 1 542 245 97 13 chr12 112442070 112442225 -31840264 - MIR SINE MIR 0 262 95 276 232 0 0 chr12 112442225 112442281 -31840208 - MLT1B LTR MaLR 0 390 335 1965 124 8 77 chr12 112442281 112442645 -31839844 + MER1B DNA MER1_type 1 339 0 1762 172 11 44 chr12 112442645 112442987 -31839502 - MLT1B LTR MaLR -55 335 6 257 221 208 13 chr12 112442991 112443068 -31839421 - MIR SINE MIR -166 96 5 547 233 25 0 chr12 112443082 112443202 -31839287 + MER94 DNA DNA 8 130 -4 601 209 30 132 chr12 112443227 112443462 -31839027 - L2 LINE L2 -83 3189 2979 505 211 23 11 chr12 112443597 112443774 -31838715 - MER58 DNA MER1_type -13 2407 24 292 295 90 39 chr12 112443896 112444052 -31838437 + MIR SINE MIR 18 181 -81 180 398 12 12 chr12 112444060 112444143 -31838346 - L2 LINE L2 -2 3270 3188 300 352 25 25 chr12 112444753 112444912 -31837577 + MIR SINE MIR 31 189 -73 184 296 0 0 chr12 112444917 112444961 -31837528 - MIR SINE MIR -3 259 216 229 306 0 0 chr12 112445044 112445093 -31837396 - MIR SINE MIR -213 49 1 285 29 0 0 chr12 112445141 112445175 -31837314 + (TG)n Simple_repeat Simple_repeat 2 35 0 247 295 152 38 chr12 112445183 112445288 -31837201 - L2 LINE L2 -1 3271 3155 2052 106 0 86 chr12 112446049 112446388 -31836101 + AluSx SINE Alu 1 310 -2 333 338 0 0 chr12 112446656 112446789 -31835700 - L1ME LINE L1 -349 5813 5681 2410 126 167 5 chr12 112446906 112447343 -31835146 + MLT2B2 LTR ERVL 1 508 -7 274 263 71 114 chr12 112447655 112448005 -31834484 + L2 LINE L2 2548 2882 -432 239 364 74 25 chr12 112448186 112448307 -31834182 + L2 LINE L2 3180 3306 -7 588 269 32 19 chr12 112448758 112448914 -31833575 + MER5A DNA MER1_type 27 184 -5 1192 171 99 33 chr12 112448927 112449231 -31833258 + MER33 DNA MER1_type 1 324 0 225 224 176 12 chr12 112449440 112449525 -31832964 - L1M2a LINE L1 -5266 1902 1804 795 314 32 16 chr12 112450124 112450376 -31832113 + MIR SINE MIR 7 262 0 1601 108 5 0 chr12 112450523 112450727 -31831762 + AluSc SINE Alu 1 205 -104 305 283 41 44 chr12 112450827 112450960 -31831529 - MIR SINE MIR -57 151 16 382 136 45 23 chr12 112451207 112451295 -31831194 + L3 LINE CR1 1403 1492 -85 669 241 96 22 chr12 112451943 112452163 -31830326 - MIR SINE MIR 0 262 22 423 222 50 10 chr12 112452811 112452910 -31829579 + L2 LINE L2 3211 3313 0 785 257 217 19 chr12 112452943 112453582 -31828907 + L2 LINE L2 2249 3047 -266 197 179 54 36 chr12 112453583 112453639 -31828850 + MIR SINE MIR 174 230 -32 198 304 38 25 chr12 112453705 112453784 -31828705 + L2 LINE L2 3229 3308 -5 422 309 105 16 chr12 112454940 112455131 -31827358 + MIR SINE MIR 32 239 -23 308 250 45 76 chr12 112455197 112455329 -31827160 - L2 LINE L2 -78 3235 3108 1973 146 30 0 chr12 112455332 112455627 -31826862 + AluSx SINE Alu 1 304 -8 896 176 26 7 chr12 112455630 112455783 -31826706 + AluJo/FRAM SINE Alu 130 285 -27 2148 80 7 14 chr12 112455812 112456098 -31826391 + AluSx SINE Alu 20 303 -9 219 69 0 0 chr12 112456124 112456153 -31826336 + (TGGG)n Simple_repeat Simple_repeat 2 30 0 * 231 36 0 0 chr12 112456152 112456180 -31826309 + (GA)n Simple_repeat Simple_repeat 1 28 0 277 239 14 0 chr12 112456183 112456254 -31826235 - L2 LINE L2 -247 3066 2995 473 331 148 32 chr12 112456684 112456962 -31825527 + L2 LINE L2 2960 3269 -3 451 248 67 20 chr12 112457005 112457154 -31825335 - MER112 DNA MER1_type -6 254 99 207 254 0 18 chr12 112457429 112457484 -31825005 + (CA)n Simple_repeat Simple_repeat 2 55 0 440 335 0 11 chr12 112457495 112457674 -31824815 + (CA)n Simple_repeat Simple_repeat 2 178 0 402 277 71 39 chr12 112457887 112458042 -31824447 + MIR SINE MIR 25 184 -78 222 333 154 12 chr12 112458050 112458212 -31824277 + MIR SINE MIR 8 192 -70 195 250 0 0 chr12 112459243 112459287 -31823202 - MIR SINE MIR -70 192 149 592 193 40 60 chr12 112459379 112459529 -31822960 + L1MB7 LINE L1 5916 6062 -122 461 145 0 0 chr12 112459522 112459598 -31822891 + L1MB8 LINE L1 6098 6173 -5 * 1776 171 3 13 chr12 112459610 112459909 -31822580 + AluJo SINE Alu 1 296 -16 33 0 0 0 chr12 112461404 112461437 -31821052 + AT_rich Low_complexity Low_complexity 1 33 0 379 346 102 15 chr12 112461801 112462006 -31820483 - MIR SINE MIR -11 251 29 364 286 116 9 chr12 112462120 112462242 -31820247 - MIR3 SINE MIR -49 159 24 321 89 0 0 chr12 112464244 112464289 -31818200 + (ATG)n Simple_repeat Simple_repeat 3 47 0 628 201 26 12 chr12 112464430 112464569 -31817920 + MIR SINE MIR 25 161 -63 286 264 90 76 chr12 112464687 112464778 -31817711 + MIR SINE MIR 47 142 -120 2322 96 0 29 chr12 112464778 112465092 -31817397 + AluSx SINE Alu 1 305 -7 286 264 90 76 chr12 112465092 112465144 -31817345 + MIR SINE MIR 142 192 -70 * 398 267 119 45 chr12 112465138 112465340 -31817149 - MIR SINE MIR 0 262 46 814 231 149 0 chr12 112465985 112466193 -31816296 + MIR SINE MIR 2 240 -22 310 289 231 0 chr12 112466225 112466346 -31816143 + L2 LINE L2 3123 3271 -1 736 132 16 0 chr12 112466494 112466615 -31815874 - MLT1D LTR MaLR -4 501 379 736 191 95 111 chr12 112466630 112466961 -31815528 - MLT1D LTR MaLR -192 320 1 2161 106 3 0 chr12 112467187 112467495 -31814994 + AluSg SINE Alu 1 309 0 1231 101 0 0 chr12 112467495 112467653 -31814836 + AluSg/x SINE Alu 131 288 -22 26 0 0 0 chr12 112467653 112467679 -31814810 + AT_rich Low_complexity Low_complexity 1 26 0 941 277 8 8 chr12 112467785 112468020 -31814469 - MIR SINE MIR -8 254 20 256 370 7 22 chr12 112468049 112468187 -31814302 - MIR SINE MIR -56 206 71 490 303 103 15 chr12 112469900 112470095 -31812394 - MIR SINE MIR -12 250 39 201 143 0 0 chr12 112470984 112471019 -31811470 + (CA)n Simple_repeat Simple_repeat 1 35 0 341 219 10 128 chr12 112471065 112471235 -31811254 + MIR SINE MIR 47 195 -63 1434 184 86 4 chr12 112471695 112471851 -31810638 - AluJb SINE Alu -23 289 147 312 27 0 0 chr12 112471851 112471888 -31810601 + (TG)n Simple_repeat Simple_repeat 1 37 0 1434 184 86 4 chr12 112471888 112471998 -31810491 - AluJb SINE Alu -165 147 1 230 205 82 139 chr12 112472901 112473023 -31809466 - MIR SINE MIR -73 189 75 273 200 53 13 chr12 112473521 112473596 -31808893 + L1MB3 LINE L1 5786 5863 -320 541 304 120 5 chr12 112473663 112473880 -31808609 - L2 LINE L2 -500 2814 2573 1125 170 107 14 chr12 112473883 112474172 -31808317 + L1MB3 LINE L1 5861 6176 -7 666 174 99 6 chr12 112474491 112474652 -31807837 - MER53 DNA DNA -13 176 1 368 313 37 0 chr12 112474764 112474898 -31807591 + MIR SINE MIR 53 191 -71 372 296 104 0 chr12 112475047 112475172 -31807317 + MIR3 SINE MIR 43 180 -28 25 0 0 0 chr12 112475207 112475232 -31807257 + AT_rich Low_complexity Low_complexity 1 25 0 233 298 18 0 chr12 112477269 112477326 -31805163 + L2 LINE L2 3215 3272 0 351 274 150 9 chr12 112477408 112477521 -31804968 - L2 LINE L2 -1 3312 3184 202 244 0 0 chr12 112477743 112477788 -31804701 + (TAA)n Simple_repeat Simple_repeat 3 47 0 188 271 127 17 chr12 112478930 112479048 -31803441 + MIR SINE MIR 70 200 -62 271 264 187 11 chr12 112479132 112479223 -31803266 - MER5A DNA MER1_type -32 157 51 712 297 18 14 chr12 112479882 112480101 -31802388 + MIR SINE MIR 35 254 -8 259 260 177 0 chr12 112480297 112480393 -31802096 - L2 LINE L2 -232 3040 2928 240 269 77 0 chr12 112481325 112481403 -31801086 + MIR SINE MIR 102 185 -77 245 309 93 0 chr12 112481551 112481648 -31800841 - L2 LINE L2 -20 3252 3147 506 278 122 10 chr12 112482643 112482848 -31799641 - MIR SINE MIR -33 229 2 205 268 54 0 chr12 112483204 112483260 -31799229 - MIR SINE MIR -6 256 198 520 114 13 0 chr12 112483281 112483360 -31799129 - MADE1 DNA Mariner 0 80 1 601 181 17 26 chr12 112483360 112483476 -31799013 - MIR SINE MIR -111 151 37 22 35 0 0 chr12 112483909 112483938 -31798551 + AT_rich Low_complexity Low_complexity 1 29 0 325 227 56 72 chr12 112484095 112484214 -31798275 - MIR3 SINE MIR -46 162 46 339 331 88 7 chr12 112484691 112484818 -31797671 - L2 LINE L2 -9 3263 3126 822 278 69 12 chr12 112484818 112485063 -31797426 + MIR SINE MIR 1 259 -3 222 300 0 0 chr12 112485996 112486046 -31796443 + polypurine Low_complexity Low_complexity 2 51 0 407 320 74 10 chr12 112486991 112487194 -31795295 + MIR SINE MIR 16 231 -31 309 303 173 0 chr12 112488313 112488475 -31794014 - MIR SINE MIR -70 192 3 749 213 30 0 chr12 112489124 112489293 -31793196 - MIR SINE MIR -87 175 2 335 311 21 37 chr12 112489410 112489600 -31792889 - MIR SINE MIR -49 213 27 383 288 68 0 chr12 112490196 112490342 -31792147 + MIR3 SINE MIR 47 202 -6 262 351 34 14 chr12 112491514 112491662 -31790827 + MER5A DNA MER1_type 28 189 0 631 276 0 0 chr12 112491749 112491905 -31790584 - MIR SINE MIR -19 243 88 304 249 147 30 chr12 112492774 112492971 -31789518 - L2 LINE L2 0 3313 3094 240 220 17 0 chr12 112493239 112493298 -31789191 + Charlie8 DNA MER1_type 82 141 -2276 7888 159 6 10 chr12 112493311 112494540 -31787949 - L1PA13 LINE L1 -4 6159 4926 396 0 0 0 chr12 112494540 112494584 -31787905 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2240 105 0 0 chr12 112494584 112494869 -31787620 - AluSx SINE Alu -27 285 1 7888 159 6 10 chr12 112494869 112495773 -31786716 - L1PA13 LINE L1 -1235 4928 4014 263 320 10 10 chr12 112495775 112495875 -31786614 + Charlie8 DNA MER1_type 128 227 -2190 358 156 62 42 chr12 112496787 112496883 -31785606 + MER5B DNA MER1_type 79 176 -2 599 234 206 0 chr12 112496967 112497151 -31785338 + MIR SINE MIR 40 261 -1 291 143 0 0 chr12 112497984 112498033 -31784456 + MER5A DNA MER1_type 3 51 -138 893 230 61 43 chr12 112498033 112498478 -31784011 + MLT1B LTR MaLR 1 380 -10 703 184 21 21 chr12 112498481 112498622 -31783867 + MER5A DNA MER1_type 49 189 0 2404 96 0 6 chr12 112500125 112500439 -31782050 - AluSx SINE Alu 0 312 1 23 0 0 0 chr12 112500457 112500480 -31782009 + AT_rich Low_complexity Low_complexity 1 23 0 35 63 0 0 chr12 112500536 112500599 -31781890 + AT_rich Low_complexity Low_complexity 1 63 0 307 250 45 0 chr12 112501440 112501528 -31780961 - MIR SINE MIR -85 177 86 1997 207 46 7 chr12 112501702 112502136 -31780353 - MLT1C LTR MaLR -4 463 13 2099 105 0 3 chr12 112502191 112502524 -31779965 - AluSx SINE Alu 0 332 1 373 299 55 0 chr12 112502601 112502728 -31779761 - L2 LINE L2 0 3313 3180 208 246 107 25 chr12 112502733 112502855 -31779634 + MIR3 SINE MIR 2 133 -75 281 261 90 27 chr12 112502984 112503095 -31779394 + MIR SINE MIR 126 243 -19 807 217 111 76 chr12 112503962 112504390 -31778099 - MLT1H LTR MaLR 0 555 32 2074 123 13 16 chr12 112505199 112505508 -31776981 + AluSx SINE Alu 1 308 -4 270 0 0 0 chr12 112506238 112506268 -31776221 + (TG)n Simple_repeat Simple_repeat 2 31 0 1745 178 4 0 chr12 112506271 112506552 -31775937 - AluJo SINE Alu -30 282 1 22 56 0 0 chr12 112507784 112507820 -31774669 + AT_rich Low_complexity Low_complexity 1 36 0 345 196 163 11 chr12 112508248 112508340 -31774149 - L2 LINE L2 -8 3305 3200 407 246 116 14 chr12 112508560 112508698 -31773791 + MER117 DNA MER1_type 11 162 -35 23 33 0 0 chr12 112509141 112509171 -31773318 + AT_rich Low_complexity Low_complexity 1 30 0 419 212 139 46 chr12 112509696 112509847 -31772642 + MER103 DNA DNA 2 166 0 333 0 0 0 chr12 112511170 112511207 -31771282 + (CA)n Simple_repeat Simple_repeat 2 38 0 214 232 0 36 chr12 112512037 112512093 -31770396 - MIR SINE MIR -189 73 20 2306 100 3 0 chr12 112512251 112512550 -31769939 - AluSc SINE Alu -9 300 1 889 153 25 19 chr12 112512650 112512807 -31769682 - FRAM SINE Alu -21 155 1 2492 71 0 26 chr12 112513536 112513846 -31768643 - AluSc SINE Alu -7 302 1 21 0 0 0 chr12 112514979 112515000 -31767489 + AT_rich Low_complexity Low_complexity 1 21 0 2244 85 0 39 chr12 112515177 112515521 -31766968 - AluY SINE Alu 0 311 1 278 241 121 54 chr12 112515897 112516011 -31766478 - MIR SINE MIR -5 257 127 2257 88 74 37 chr12 112516011 112516362 -31766127 + THE1B LTR MaLR 1 364 0 278 241 121 54 chr12 112516362 112516413 -31766076 - MIR SINE MIR -135 127 81 225 257 14 68 chr12 112517134 112517208 -31765281 - L2 LINE L2 0 3272 3203 297 299 0 0 chr12 112517404 112517471 -31765018 + MER20 DNA MER1_type 152 218 -1 392 269 0 0 chr12 112517743 112517836 -31764653 + MER5A DNA MER1_type 9 101 -88 320 291 80 106 chr12 112517988 112518187 -31764302 + MER91A DNA MER1_type 1 194 -2 1361 231 34 3 chr12 112518199 112518523 -31763966 + MER46C DNA MER2_type 5 338 0 317 243 122 48 chr12 112518523 112518627 -31763862 - MIR SINE MIR -61 147 42 189 0 0 0 chr12 112518694 112518715 -31763774 + (T)n Simple_repeat Simple_repeat 1 21 0 259 122 0 0 chr12 112519614 112519655 -31762834 - L1M LINE L1 -804 5370 5330 * 2293 217 65 50 chr12 112519653 112521883 -31760606 - L1MEc LINE L1 -888 5327 2276 1757 158 14 0 chr12 112521883 112522167 -31760322 - AluJo SINE Alu -24 288 1 2293 217 65 50 chr12 112522167 112522813 -31759676 - L1MEc LINE L1 -3939 2276 1642 * 2523 279 57 41 chr12 112522808 112523175 -31759314 - L1MEc LINE L1 -5064 1332 973 234 0 0 0 chr12 112523175 112523201 -31759288 + (TG)n Simple_repeat Simple_repeat 2 27 0 2523 279 57 41 chr12 112523201 112524106 -31758383 - L1MEc LINE L1 -5423 973 39 279 326 45 28 chr12 112524290 112524468 -31758021 - L1ME LINE L1 -459 5662 5482 192 125 0 0 chr12 112524813 112524845 -31757644 + (TCC)n Simple_repeat Simple_repeat 2 33 0 1775 156 80 0 chr12 112524861 112525150 -31757339 - AluJb SINE Alu 0 312 1 283 287 16 57 chr12 112525331 112525453 -31757036 + L2 LINE L2 3187 3303 -10 1049 223 172 0 chr12 112527884 112528175 -31754314 + MER2 DNA MER2_type 2 342 -2 990 233 147 48 chr12 112528547 112529105 -31753384 + HAL1 LINE L1 817 1429 -1078 219 173 19 0 chr12 112529748 112529800 -31752689 + (CA)n Simple_repeat Simple_repeat 2 54 0 1012 235 88 84 chr12 112529888 112530824 -31751665 - MER52A LTR ERV1 -5 1750 287 369 287 30 0 chr12 112530969 112531070 -31751419 - L2 LINE L2 0 3313 3210 1566 273 104 0 chr12 112531088 112531586 -31750903 - L2 LINE L2 -346 2968 2419 630 253 129 9 chr12 112531618 112531843 -31750646 - MIR SINE MIR 0 262 11 304 181 12 72 chr12 112531855 112531938 -31750551 - L2 LINE L2 -911 2403 2326 1290 220 121 52 chr12 112531938 112532428 -31750061 - MLT1F1 LTR MaLR 0 567 31 251 292 42 0 chr12 112532432 112532504 -31749985 - L2 LINE L2 -995 2319 2245 290 259 37 28 chr12 112532535 112532643 -31749846 - LTR67 LTR ERVL -97 460 352 298 273 130 50 chr12 112532947 112533430 -31749059 + HAL1 LINE L1 916 1437 -1070 746 195 133 26 chr12 112533498 112533724 -31748765 - MIR SINE MIR -2 260 11 402 247 58 63 chr12 112533728 112533902 -31748587 + HAL1 LINE L1 1506 1678 -829 310 259 61 0 chr12 112533923 112534070 -31748419 + (TA)n Simple_repeat Simple_repeat 1 156 0 499 195 188 60 chr12 112535070 112535219 -31747270 + MER5A DNA MER1_type 16 183 -6 1775 182 49 3 chr12 112535341 112535649 -31746840 - MSTD LTR MaLR -74 322 1 2061 184 66 10 chr12 112536563 112537055 -31745434 + MER54A LTR ERVL 79 886 -15 752 157 0 0 chr12 112537146 112537267 -31745222 + FLAM_C SINE Alu 1 121 -12 2020 153 0 7 chr12 112538051 112538359 -31744130 + AluSx SINE Alu 1 306 -6 1225 251 78 21 chr12 112538542 112538964 -31743525 - MER74B LTR ERVL -56 566 121 26 0 0 0 chr12 112539025 112539051 -31743438 + AT_rich Low_complexity Low_complexity 1 26 0 1101 91 10 111 chr12 112539106 112539165 -31743324 - L1PB1 LINE L1 -9 6142 6079 2353 82 0 7 chr12 112539165 112539471 -31743018 - AluSx SINE Alu -6 306 3 1101 91 10 111 chr12 112539471 112539619 -31742870 - L1PB1 LINE L1 -72 6079 5956 225 0 0 0 chr12 112539685 112539710 -31742779 + (TA)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr12 112539710 112539735 -31742754 + (T)n Simple_repeat Simple_repeat 1 25 0 247 209 171 29 chr12 112540111 112540216 -31742273 + MER5B DNA MER1_type 59 178 0 429 259 54 29 chr12 112540943 112541148 -31741341 - L1ME4a LINE L1 -236 5885 5676 248 0 31 0 chr12 112542167 112542199 -31740290 + (TG)n Simple_repeat Simple_repeat 2 34 0 359 177 10 52 chr12 112542701 112542797 -31739692 + MLT1J2 LTR MaLR 15 106 -344 252 155 129 43 chr12 112543648 112543764 -31738725 - L1ME4a LINE L1 -13 6108 5983 307 255 71 0 chr12 112543785 112543883 -31738606 - L1ME4a LINE L1 -218 5903 5799 1804 161 20 13 chr12 112543914 112544213 -31738276 - AluJo SINE Alu -11 301 1 22 35 0 0 chr12 112544332 112544361 -31738128 + AT_rich Low_complexity Low_complexity 1 29 0 838 250 103 48 chr12 112544431 112544867 -31737622 - L1MC4a LINE L1 -1723 6085 5626 612 40 0 0 chr12 112545970 112546045 -31736444 + (TG)n Simple_repeat Simple_repeat 1 75 0 809 241 37 0 chr12 112546046 112546237 -31736252 - MER58A DNA MER1_type -26 198 1 736 266 184 3 chr12 112546284 112546604 -31735885 - L1MC4a LINE L1 -2176 5632 5255 316 184 40 0 chr12 112546610 112546686 -31735803 - L1M4 LINE L1 -3459 2687 2609 1492 264 57 21 chr12 112546686 112547122 -31735367 - L2 LINE L2 -977 2337 1886 1113 191 32 73 chr12 112547125 112547534 -31734955 + MER65A-int LTR ERV1 2044 2435 -4323 827 172 32 41 chr12 112547761 112547982 -31734507 + MER65A-int LTR ERV1 3512 3730 -2868 1458 159 127 86 chr12 112548062 112548972 -31733517 + MER65A-int LTR ERV1 3730 4699 -1632 254 249 11 50 chr12 112549185 112549366 -31733123 + (GGGTG)n Simple_repeat Simple_repeat 3 176 0 * 369 295 0 22 chr12 112549238 112549421 -31733068 + G-rich Low_complexity Low_complexity 1 179 0 3351 121 63 15 chr12 112550728 112551346 -31731143 - Tigger3(Golem) DNA MER2_type -21 3008 2361 1104 178 32 94 chr12 112551396 112551705 -31730784 - Tigger3(Golem) DNA MER2_type -2737 292 3 1155 98 6 0 chr12 112551705 112551888 -31730601 + L1MA8 LINE L1 6108 6291 0 356 185 134 34 chr12 112552053 112552172 -31730317 + L1MEc LINE L1 968 1098 -5298 749 295 98 7 chr12 112552748 112553463 -31729026 - L1MEd LINE L1 -2850 3279 2500 2210 103 0 0 chr12 112553469 112553777 -31728712 - AluSg SINE Alu 0 308 1 360 211 48 109 chr12 112553792 112553939 -31728550 - L1MEd LINE L1 -4971 1148 1011 25 31 0 0 chr12 112554251 112554283 -31728206 + AT_rich Low_complexity Low_complexity 1 32 0 470 240 36 86 chr12 112555092 112555371 -31727118 - L1ME3 LINE L1 -222 5940 5676 470 234 8 0 chr12 112555398 112555522 -31726967 - Charlie4 DNA MER1_type -1 1960 1836 183 123 0 137 chr12 112555541 112555614 -31726875 - MER5C DNA MER1_type -135 189 127 2238 97 0 10 chr12 112555798 112556098 -31726391 + AluSq SINE Alu 1 297 -16 303 100 140 0 chr12 112556340 112556390 -31726099 + MER65A-int LTR ERV1 5336 5392 -939 5498 199 61 5 chr12 112556400 112557602 -31724887 + MER65A-int LTR ERV1 3603 4871 0 2466 124 35 49 chr12 112557602 112558053 -31724436 + MER65A LTR ERV1 1 445 0 874 277 131 3 chr12 112558100 112558429 -31724060 - L2 LINE L2 -2017 1297 927 329 316 48 49 chr12 112559502 112559679 -31722810 + MIR SINE MIR 19 191 -51 26 30 0 0 chr12 112560570 112560603 -31721886 + AT_rich Low_complexity Low_complexity 1 33 0 1262 137 0 0 chr12 112560616 112560798 -31721691 + AluSg/x SINE Alu 129 310 0 180 0 0 0 chr12 112560972 112560992 -31721497 + (CA)n Simple_repeat Simple_repeat 1 20 0 1286 105 0 0 chr12 112561143 112561315 -31721174 + AluSg/x SINE Alu 141 312 0 180 0 0 0 chr12 112561489 112561509 -31720980 + (CA)n Simple_repeat Simple_repeat 1 20 0 274 289 107 13 chr12 112562821 112562980 -31719509 - L2 LINE L2 -1293 2021 1848 9279 28 1 0 chr12 112563209 112565084 -31717405 - L1PA4 LINE L1 -3 6152 4277 1277 179 94 122 chr12 112565650 112566126 -31716363 + MLT1D LTR MaLR 43 505 0 181 324 105 29 chr12 112567384 112567489 -31715000 - L2 LINE L2 -18 3295 3183 486 96 0 96 chr12 112567676 112567770 -31714719 - MER2 DNA MER2_type -260 85 1 571 259 93 82 chr12 112567777 112568313 -31714176 - L1MEd LINE L1 -5574 545 4 235 203 0 34 chr12 112568313 112568372 -31714117 + T-rich Low_complexity Low_complexity 2 58 0 541 209 117 11 chr12 112568436 112568590 -31713899 + MIR SINE MIR 3 169 -63 22 56 0 0 chr12 112568779 112568815 -31713674 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chr12 112569104 112569143 -31713346 + AT_rich Low_complexity Low_complexity 1 39 0 572 280 32 16 chr12 112569823 112570012 -31712477 - MIR SINE MIR -7 255 64 1510 152 76 4 chr12 112570169 112570458 -31712031 - AluJb SINE Alu 0 308 1 21 36 0 0 chr12 112570460 112570488 -31712001 + AT_rich Low_complexity Low_complexity 1 28 0 881 262 145 14 chr12 112570551 112570979 -31711510 - HAL1 LINE L1 -566 1941 1458 328 248 271 15 chr12 112570982 112571115 -31711374 - MIR SINE MIR 0 262 96 609 346 128 20 chr12 112571207 112571661 -31710828 - HAL1 LINE L1 -1860 647 145 433 313 113 0 chr12 112571965 112572160 -31710329 - L1ME3A LINE L1 -301 5869 5653 377 237 69 0 chr12 112572319 112572431 -31710058 - L1ME3A LINE L1 -535 5635 5514 330 296 88 10 chr12 112572456 112572599 -31709890 + MIR SINE MIR 15 167 -41 242 318 23 0 chr12 112572612 112572700 -31709789 + MIR SINE MIR 98 187 -75 592 183 10 0 chr12 112572708 112572812 -31709677 - MER58A DNA MER1_type 0 109 5 27 49 0 0 chr12 112572937 112572978 -31709511 + AT_rich Low_complexity Low_complexity 1 41 0 235 328 138 88 chr12 112573101 112573565 -31708924 - L3 LINE CR1 -126 1451 965 190 219 244 49 chr12 112573629 112573711 -31708778 - MIR SINE MIR -117 145 48 506 236 217 0 chr12 112574159 112574371 -31708118 - MIR SINE MIR -2 260 3 5128 34 0 0 chr12 112574453 112575104 -31707385 + L1P LINE L1 3317 3967 -2179 1440 195 64 20 chr12 112575518 112575924 -31706565 + L1M4 LINE L1 4782 5205 -941 617 257 16 0 chr12 112575926 112576113 -31706376 + L1MA9 LINE L1 6057 6246 -66 4173 124 45 48 chr12 112576181 112576958 -31705531 + LTR1 LTR ERV1 11 785 0 17141 149 19 12 chr12 112576958 112579959 -31702530 + HUERS-P2 LTR ERV1 1 3084 -4 4334 106 47 46 chr12 112580005 112580785 -31701704 + LTR1 LTR ERV1 5 785 0 485 150 75 38 chr12 112580829 112580962 -31701527 + L1M4 LINE L1 5190 5327 -819 1462 203 70 3 chr12 112581128 112581444 -31701045 + MER58B DNA MER1_type 4 340 -1 419 356 51 23 chr12 112581551 112581609 -31700880 + MIR SINE MIR 25 80 -182 1075 191 81 84 chr12 112581609 112581954 -31700535 + MER2 DNA MER2_type 1 344 0 419 356 51 23 chr12 112581954 112582111 -31700378 + MIR SINE MIR 80 246 -16 470 206 84 0 chr12 112582300 112582431 -31700058 - L1ME3A LINE L1 -226 5944 5803 842 203 0 0 chr12 112582464 112582607 -31699882 - FLAM_C SINE Alu 0 143 1 186 43 0 0 chr12 112582634 112582657 -31699832 + (TC)n Simple_repeat Simple_repeat 2 24 0 504 238 8 33 chr12 112582657 112582779 -31699710 - FLAM_C SINE Alu -24 119 1 637 179 0 0 chr12 112582827 112582939 -31699550 + MER7A DNA MER2_type 1 110 -236 297 238 213 0 chr12 112583316 112583396 -31699093 - L2 LINE L2 -4 3268 3172 200 186 0 47 chr12 112586103 112586146 -31696343 - MIR SINE MIR -4 258 218 256 351 40 0 chr12 112586175 112586249 -31696240 - MIR SINE MIR -57 151 75 288 260 123 14 chr12 112586511 112586657 -31695832 - MIR SINE MIR -51 211 50 2132 107 7 3 chr12 112587257 112587548 -31694941 - AluSx SINE Alu -20 292 1 757 262 147 0 chr12 112587563 112587788 -31694701 + MIR SINE MIR 5 262 0 296 214 63 92 chr12 112588479 112588609 -31693880 - MIR SINE MIR -77 131 30 251 306 61 61 chr12 112588856 112589153 -31693336 - L2 LINE L2 -923 2391 2095 362 302 195 14 chr12 112589184 112589399 -31693090 - MIR SINE MIR -7 255 2 24 0 0 0 chr12 112589941 112589965 -31692524 + AT_rich Low_complexity Low_complexity 1 24 0 220 313 88 0 chr12 112590226 112590306 -31692183 + L2 LINE L2 3200 3286 -27 2430 75 0 3 chr12 112590900 112591208 -31691281 - AluSg SINE Alu -3 307 1 21 36 0 0 chr12 112592201 112592229 -31690260 + AT_rich Low_complexity Low_complexity 1 28 0 319 141 258 86 chr12 112592429 112592592 -31689897 - L1MC5 LINE L1 -47 7914 7724 247 283 202 54 chr12 112592825 112593083 -31689406 - L2 LINE L2 -2 3311 3016 357 238 36 0 chr12 112595153 112595237 -31687252 + MIR SINE MIR 164 250 -12 407 267 57 17 chr12 112595496 112595672 -31686817 + HAL1 LINE L1 1994 2176 -331 1745 161 3 26 chr12 112596350 112596654 -31685835 + AluJo SINE Alu 1 297 -15 586 241 134 34 chr12 112597783 112598074 -31684415 + L1ME LINE L1 155 474 -5949 1683 219 20 10 chr12 112598078 112598485 -31684004 + L1ME LINE L1 1081 1491 -4932 * 2377 221 138 27 chr12 112598472 112598670 -31683819 + L1ME LINE L1 3029 3203 -3738 2156 106 0 10 chr12 112598670 112598971 -31683518 + AluSc SINE Alu 1 298 -11 2377 221 138 27 chr12 112598971 112599085 -31683404 + L1ME LINE L1 3203 3303 -3638 1184 155 40 0 chr12 112599085 112599285 -31683204 + MER6B DNA MER2_type 2 209 -1 2377 221 138 27 chr12 112599285 112599982 -31682507 + L1ME LINE L1 3303 4152 -2789 575 279 66 12 chr12 112599986 112600244 -31682245 + L1ME LINE L1 4524 4795 -2146 243 0 0 0 chr12 112600245 112600272 -31682217 + (CA)n Simple_repeat Simple_repeat 1 27 0 819 243 98 32 chr12 112600285 112600685 -31681804 + L1ME LINE L1 5655 6080 -861 679 289 18 46 chr12 112600695 112600894 -31681595 + L1ME LINE L1 6198 6401 -556 1821 174 0 0 chr12 112600894 112601175 -31681314 + AluJo SINE Alu 1 281 -31 198 103 0 0 chr12 112601177 112601206 -31681283 + (TAAG)n Simple_repeat Simple_repeat 3 31 0 679 289 18 46 chr12 112601206 112601287 -31681202 + L1ME LINE L1 6402 6473 -484 669 241 85 40 chr12 112602302 112602526 -31679963 + MIR SINE MIR 29 262 0 204 40 0 0 chr12 112602716 112602741 -31679748 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1353 183 0 16 chr12 112602744 112602990 -31679499 - AluJo SINE Alu -24 288 47 544 148 11 0 chr12 112603241 112603329 -31679160 + HY4 scRNA scRNA 1 89 -4 21 0 0 0 chr12 112603331 112603352 -31679137 + AT_rich Low_complexity Low_complexity 1 21 0 450 0 0 0 chr12 112605126 112605176 -31677313 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1491 185 0 54 chr12 112605179 112605477 -31677012 - AluJo SINE Alu -30 282 1 525 240 55 50 chr12 112605497 112605697 -31676792 + MER106A DNA MER1_type 36 236 0 2541 40 0 0 chr12 112605699 112606001 -31676488 + AluY SINE Alu 1 302 -9 22 70 0 0 chr12 112606618 112606661 -31675828 + AT_rich Low_complexity Low_complexity 1 43 0 272 272 58 0 chr12 112606935 112607038 -31675451 - L1ME LINE L1 -305 5865 5757 331 339 216 20 chr12 112607253 112607427 -31675062 - L2 LINE L2 -898 2416 2277 514 183 324 0 chr12 112607427 112607569 -31674920 - MER5A DNA MER1_type -1 188 1 331 339 216 20 chr12 112607569 112608209 -31674280 - L2 LINE L2 -1037 2277 1442 886 215 77 105 chr12 112608258 112608649 -31673840 + L1MEc LINE L1 1688 2067 -4329 5430 30 6 3 chr12 112608783 112609428 -31673061 + L1PA5 LINE L1 5505 6151 -3 22 0 0 0 chr12 112609617 112609639 -31672850 + AT_rich Low_complexity Low_complexity 1 22 0 254 279 45 65 chr12 112609735 112609906 -31672583 + MIR SINE MIR 20 249 -13 768 169 0 0 chr12 112610074 112610198 -31672291 - AluJo SINE Alu -157 155 32 1680 173 0 33 chr12 112611160 112611460 -31671029 - AluJb SINE Alu -22 290 1 1768 43 26 0 chr12 112611596 112611829 -31670660 + L1PA8 LINE L1 5933 6171 -1 1657 152 52 17 chr12 112611998 112612288 -31670201 - AluJo SINE Alu -8 304 5 27 0 0 0 chr12 112613189 112613216 -31669273 + AT_rich Low_complexity Low_complexity 1 27 0 259 250 70 0 chr12 112613960 112614060 -31668429 - L1ME4a LINE L1 -49 6072 5966 821 108 58 0 chr12 112614079 112614218 -31668271 - L1MA8 LINE L1 -6 6285 6139 1341 139 51 0 chr12 112614218 112614455 -31668034 - L1MA8 LINE L1 -44 6247 5999 32 86 0 0 chr12 112614458 112614539 -31667950 + AT_rich Low_complexity Low_complexity 1 81 0 1510 208 14 3 chr12 112614579 112614867 -31667622 + AluJo SINE Alu 7 297 -15 4158 250 146 70 chr12 112614879 112617164 -31665325 - HAL1 LINE L1 -48 2459 2 539 284 62 29 chr12 112617166 112617472 -31665017 - L1ME4a LINE L1 -218 5903 5588 339 105 0 0 chr12 112617777 112617834 -31664655 + (CA)n Simple_repeat Simple_repeat 2 58 0 24 0 0 0 chr12 112617998 112618022 -31664467 + AT_rich Low_complexity Low_complexity 1 24 0 690 251 135 5 chr12 112618283 112618498 -31663991 - MIR SINE MIR -3 259 17 33 25 0 0 chr12 112619445 112619485 -31663004 + AT_rich Low_complexity Low_complexity 1 40 0 1777 133 47 109 chr12 112619950 112620417 -31662072 + L1MB7 LINE L1 5582 6019 -165 802 219 0 0 chr12 112620426 112620581 -31661908 - FRAM SINE Alu -21 155 1 801 166 7 0 chr12 112620582 112620721 -31661768 + L1MB7 LINE L1 6026 6165 -19 468 207 0 86 chr12 112620820 112620960 -31661529 + L1MC4 LINE L1 7914 8041 -1 256 317 48 60 chr12 112721171 112721338 -31561151 + L2 LINE L2 3001 3165 -107 600 184 0 9 chr12 112721631 112721740 -31560749 - L1PB4 LINE L1 -43 6113 6006 1088 252 112 3 chr12 112721987 112722273 -31560216 - MLT1J LTR MaLR -194 317 1 686 229 169 5 chr12 112722475 112722676 -31559813 + MIR SINE MIR 4 237 -25 2365 92 0 0 chr12 112722806 112723101 -31559388 - AluSx SINE Alu -17 295 1 317 222 42 12 chr12 112723513 112723680 -31558809 + (TATAA)n Simple_repeat Simple_repeat 3 174 0 1616 166 45 42 chr12 112723699 112723988 -31558501 - AluJo SINE Alu -22 290 1 951 107 0 0 chr12 112724005 112724145 -31558344 + AluY SINE Alu 169 308 -3 284 153 0 14 chr12 112724149 112724221 -31558268 + (TA)n Simple_repeat Simple_repeat 1 71 0 748 197 0 0 chr12 112725236 112725368 -31557121 - FLAM_A SINE Alu 0 133 2 311 231 170 48 chr12 112725615 112725762 -31556727 + MER103 DNA DNA 2 166 0 315 303 28 18 chr12 112725869 112725978 -31556511 + L2 LINE L2 3182 3291 -22 262 264 98 43 chr12 112726149 112726312 -31556177 - L1ME LINE L1 -372 5749 5578 524 342 69 9 chr12 112727711 112727942 -31554547 + MIR SINE MIR 13 257 -5 1349 150 0 30 chr12 112728390 112728496 -31553993 + AluSg/x SINE Alu 81 189 -123 2246 118 59 3 chr12 112728496 112728851 -31553638 - THE1C LTR MaLR 0 375 1 1349 150 0 30 chr12 112728851 112728977 -31553512 + AluSg/x SINE Alu 189 306 -6 843 171 5 45 chr12 112729295 112729494 -31552995 - AluSx SINE Alu -18 292 102 703 254 201 18 chr12 112730541 112730938 -31551551 - L2 LINE L2 -623 2691 2222 231 281 0 0 chr12 112731510 112731592 -31550897 - AluSx SINE Alu -201 102 21 541 282 63 11 chr12 112731611 112731785 -31550704 + MER5A DNA MER1_type 7 189 0 1552 171 39 25 chr12 112732651 112732817 -31549672 - AluJo SINE Alu -27 285 112 1864 122 4 0 chr12 112732817 112733071 -31549418 + AluSp SINE Alu 1 255 -58 1552 171 39 25 chr12 112733071 112733185 -31549304 - AluJo SINE Alu -200 112 1 777 293 107 25 chr12 112733712 112734115 -31548374 + LTR16B LTR ERVL 2 437 -27 4484 91 37 11 chr12 112734132 112734760 -31547729 + LTR9B LTR ERV1 1 644 0 508 227 37 6 chr12 112734771 112734934 -31547555 + L1M4 LINE L1 3178 3345 -2801 1510 185 50 36 chr12 112734934 112735236 -31547253 + AluJo SINE Alu 1 306 -6 1296 225 85 88 chr12 112736035 112736649 -31545840 + LTR9 LTR ERV1 1 612 0 262 313 0 0 chr12 112736843 112736910 -31545579 - L2 LINE L2 -25 3247 3181 2454 76 3 6 chr12 112737020 112737334 -31545155 + AluSp SINE Alu 1 313 0 701 257 48 61 chr12 112737417 112737728 -31544761 - L1ME1 LINE L1 -15 6151 5845 * 2217 214 50 47 chr12 112737726 112738272 -31544217 - L1MEc LINE L1 -3288 3252 2702 2139 74 95 0 chr12 112738272 112738555 -31543934 - AluSp SINE Alu -3 310 1 2217 214 50 47 chr12 112738555 112738689 -31543800 - L1MEc LINE L1 -3838 2702 2570 672 84 0 11 chr12 112738693 112738788 -31543701 - L1MA3 LINE L1 0 6305 6212 1011 142 7 0 chr12 112738791 112738961 -31543528 + AluSp SINE Alu 137 287 -26 534 151 9 38 chr12 112738955 112739061 -31543428 - L1MA3 LINE L1 -73 6232 6130 * 4190 88 75 40 chr12 112739061 112740002 -31542487 - MER11A LTR ERVK -134 1132 1 342 0 0 0 chr12 112740034 112740072 -31542417 + (TG)n Simple_repeat Simple_repeat 2 39 0 444 247 57 60 chr12 112740099 112740455 -31542034 - L1MEc LINE L1 -4916 1624 1301 1838 151 7 0 chr12 112740455 112740746 -31541743 - AluSx SINE Alu -19 293 1 444 247 57 60 chr12 112740746 112740772 -31541717 - L1MEc LINE L1 -5239 1301 1276 230 139 79 158 chr12 112740996 112741097 -31541392 + L2 LINE L2 3221 3313 0 257 215 122 56 chr12 112741286 112741393 -31541096 + 7SK RNA RNA 8 121 -72 446 300 28 50 chr12 112741555 112741735 -31540754 - MIR3 SINE MIR -13 195 20 359 322 126 16 chr12 112742517 112742648 -31539841 + L1ME4a LINE L1 5636 5794 -327 2198 115 0 6 chr12 112742648 112742961 -31539528 + AluSx SINE Alu 1 311 -1 359 322 126 16 chr12 112742961 112743012 -31539477 + L1ME4a LINE L1 5794 5838 -283 386 302 107 6 chr12 112743257 112743426 -31539063 + MIR SINE MIR 2 187 -75 423 289 57 31 chr12 112743976 112744013 -31538476 + MIR3 SINE MIR 3 38 -170 2077 138 0 0 chr12 112744013 112744325 -31538164 + AluJb SINE Alu 1 312 0 423 289 57 31 chr12 112744325 112744446 -31538043 + MIR3 SINE MIR 38 165 -43 2243 77 10 22 chr12 112744667 112744980 -31537509 - AluSp SINE Alu -4 309 1 253 196 0 0 chr12 112745062 112745108 -31537381 - MIR SINE MIR -113 149 104 276 301 53 15 chr12 112746943 112747043 -31535446 - MIR SINE MIR -72 190 87 2306 58 0 49 chr12 112748020 112748346 -31534143 - AluY SINE Alu -1 310 1 423 107 0 0 chr12 112749041 112749116 -31533373 + (TATG)n Simple_repeat Simple_repeat 2 76 0 1958 127 7 0 chr12 112749137 112749421 -31533068 - AluSx SINE Alu -26 286 1 255 242 0 0 chr12 112749922 112749984 -31532505 + (TA)n Simple_repeat Simple_repeat 2 63 0 234 0 0 0 chr12 112751223 112751249 -31531240 + (CA)n Simple_repeat Simple_repeat 2 27 0 294 95 24 0 chr12 112754281 112754323 -31528166 + MER75 DNA T2_type 462 504 0 2337 65 0 0 chr12 112758151 112758444 -31524045 - AluY SINE Alu -18 293 1 230 299 65 0 chr12 112758868 112758945 -31523544 + L2 LINE L2 3142 3223 -49 320 311 44 71 chr12 112759074 112759257 -31523232 + L2 LINE L2 3001 3178 -94 2343 85 3 0 chr12 112760024 112760330 -31522159 + AluY SINE Alu 1 307 -4 262 320 205 10 chr12 112760533 112760733 -31521756 - MIR SINE MIR -12 250 12 300 344 39 13 chr12 112761244 112761398 -31521091 - MIR SINE MIR -37 225 68 219 279 54 78 chr12 112761544 112761673 -31520816 + MIR SINE MIR 107 232 -30 1886 113 7 23 chr12 112762091 112762400 -31520089 + AluSp SINE Alu 1 304 -9 425 233 0 22 chr12 112762744 112762834 -31519655 + MER21B LTR ERV1 3 90 -773 3110 197 125 22 chr12 112762843 112763621 -31518868 + MER21B LTR ERV1 5 862 -1 416 238 0 0 chr12 112763669 112763749 -31518740 + L2 LINE L2 3232 3311 -2 1866 74 78 32 chr12 112763954 112764238 -31518251 + AluY SINE Alu 1 297 -14 641 188 16 16 chr12 112764428 112764556 -31517933 + FLAM_C SINE Alu 2 129 -4 833 223 173 53 chr12 112764584 112765001 -31517488 + MLT1C LTR MaLR 1 467 0 1619 193 6 22 chr12 112766015 112766331 -31516158 + AluJb SINE Alu 1 311 -1 306 213 33 0 chr12 112767703 112767764 -31514725 + L2 LINE L2 3210 3272 0 936 291 32 12 chr12 112768121 112768372 -31514117 - MIR SINE MIR 0 262 7 971 216 58 10 chr12 112768429 112768637 -31513852 - MER58A DNA MER1_type -3 221 4 753 313 22 5 chr12 112769481 112769705 -31512784 - MIR SINE MIR -29 233 6 214 291 115 27 chr12 112771242 112771390 -31511099 - L2 LINE L2 -498 2816 2656 666 266 52 34 chr12 112771994 112772227 -31510262 - MIR SINE MIR -17 245 9 692 213 92 40 chr12 112772683 112772857 -31509632 + MIR SINE MIR 8 190 -72 1447 156 0 31 chr12 112775083 112775340 -31507149 + AluJo SINE Alu 59 307 -5 685 143 9 0 chr12 112775371 112775476 -31507013 - FLAM_C SINE Alu -17 126 21 200 303 157 22 chr12 112775702 112775880 -31506609 + L2 LINE L2 2379 2580 -734 416 309 25 45 chr12 112775924 112776125 -31506364 + MIR SINE MIR 64 260 -2 182 227 209 27 chr12 112776157 112776267 -31506222 + L2 LINE L2 3057 3186 -86 1170 154 98 5 chr12 112776385 112776599 -31505890 - MER46A DNA MER2_type -1 235 2 2180 104 0 3 chr12 112777954 112778275 -31504214 - AluSq SINE Alu 0 313 1 454 250 61 24 chr12 112779198 112779362 -31503127 + MER112 DNA MER1_type 91 260 0 657 306 5 29 chr12 112779551 112779760 -31502729 - MIR SINE MIR -6 256 53 445 260 135 31 chr12 112780237 112780429 -31502060 - MIR SINE MIR -1 261 50 1795 141 4 0 chr12 112780708 112780985 -31501504 + AluJo SINE Alu 31 308 -4 197 357 112 0 chr12 112781395 112781493 -31500996 + L2 LINE L2 3137 3245 -27 671 280 130 0 chr12 112781906 112782106 -31500383 + MIR SINE MIR 37 262 0 446 222 17 125 chr12 112782442 112782628 -31499861 - MIR3 SINE MIR -17 191 28 648 244 33 61 chr12 112783695 112783908 -31498581 - MIR SINE MIR -25 237 31 27 73 0 0 chr12 112784025 112784080 -31498409 + GC_rich Low_complexity Low_complexity 1 55 0 27 92 0 0 chr12 112784317 112784393 -31498096 + GC_rich Low_complexity Low_complexity 1 76 0 380 229 114 23 chr12 112784940 112785071 -31497418 - MIR3 SINE MIR 0 208 66 2373 67 0 0 chr12 112785184 112785481 -31497008 + AluSg SINE Alu 1 297 -13 205 191 0 21 chr12 112786324 112786371 -31496118 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 364 359 44 56 chr12 112786881 112787201 -31495288 + L2 LINE L2 2948 3263 -9 2222 254 132 107 chr12 112787320 112788816 -31493673 - L2 LINE L2 -27 3286 1829 383 169 0 0 chr12 112788816 112788881 -31493608 - MLT1K LTR MaLR 0 588 524 2222 254 132 107 chr12 112788881 112789047 -31493442 - L2 LINE L2 -1484 1829 1669 1470 134 51 16 chr12 112789047 112789301 -31493188 + AluSx SINE Alu 39 301 -11 2222 254 132 107 chr12 112789301 112789542 -31492947 - L2 LINE L2 -1644 1669 1290 198 325 12 12 chr12 112789539 112789619 -31492870 - MIR SINE MIR -96 166 87 * 188 205 96 121 chr12 112789706 112789768 -31492721 + L2 LINE L2 3185 3246 -26 1996 99 0 21 chr12 112789768 112789799 -31492690 - AluSg SINE Alu -2 308 278 226 0 0 0 chr12 112789799 112789824 -31492665 + (TTTA)n Simple_repeat Simple_repeat 2 164 0 1996 99 0 21 chr12 112789824 112790074 -31492415 - AluSg SINE Alu -32 278 33 188 205 96 121 chr12 112790074 112790094 -31492395 + L2 LINE L2 3246 3265 -7 719 279 50 0 chr12 112790466 112790685 -31491804 - MIR SINE MIR -13 249 20 208 374 111 5 chr12 112790765 112790955 -31491534 + L2 LINE L2 2824 3033 -239 250 292 35 56 chr12 112790968 112791112 -31491377 - L2 LINE L2 -4 3309 3169 2212 194 92 58 chr12 112791153 112791441 -31491048 - MER99 DNA DNA -217 611 334 2113 138 3 0 chr12 112791441 112791746 -31490743 + AluSx SINE Alu 1 306 -6 2212 194 92 58 chr12 112791746 112792044 -31490445 - MER99 DNA DNA -494 334 5 8003 42 5 0 chr12 112792278 112793251 -31489238 - L1PA8 LINE L1 0 6172 5200 1329 236 96 37 chr12 112793314 112793742 -31488747 - MLT1J LTR MaLR 0 511 59 1573 145 30 30 chr12 112793745 112794041 -31488448 + L1MB7 LINE L1 5529 5824 -360 45255 33 1 4 chr12 112794042 112800159 -31482330 + L1PA4 LINE L1 55 6155 0 1751 183 38 30 chr12 112800164 112800531 -31481958 + L1MB7 LINE L1 5814 6183 -1 1426 189 61 18 chr12 112800540 112800820 -31481669 + AluJb SINE Alu 1 292 -20 214 233 41 0 chr12 112800930 112801003 -31481486 + (AATAG)n Simple_repeat Simple_repeat 3 78 0 419 284 26 65 chr12 112801410 112801565 -31480924 + MIR SINE MIR 3 151 -111 375 172 16 0 chr12 112801608 112801672 -31480817 - MLT1K LTR MaLR 0 588 524 222 118 0 0 chr12 112801702 112801736 -31480753 + (TGG)n Simple_repeat Simple_repeat 3 36 0 248 347 107 25 chr12 112802203 112802635 -31479854 + L2 LINE L2 2292 2758 -556 1885 174 96 10 chr12 112802635 112803019 -31479470 - MER45B DNA AcHobo 0 1040 624 1481 189 70 20 chr12 112803026 112803328 -31479161 - MER45B DNA AcHobo -722 318 2 457 297 122 45 chr12 112803463 112803808 -31478681 + L2 LINE L2 2943 3295 -18 1770 181 3 0 chr12 112803835 112804127 -31478362 + AluJo SINE Alu 1 293 -19 572 212 152 0 chr12 112804261 112804393 -31478096 - MER3 DNA MER1_type 0 209 58 715 235 7 0 chr12 112804488 112804637 -31477852 - MER33 DNA MER1_type -170 154 5 22 35 0 0 chr12 112805609 112805638 -31476851 + AT_rich Low_complexity Low_complexity 1 29 0 1698 246 165 35 chr12 112805786 112806283 -31476206 + L2 LINE L2 2215 2646 -667 2364 91 0 0 chr12 112806283 112806579 -31475910 - AluSx SINE Alu -16 296 1 1698 246 165 35 chr12 112806579 112807051 -31475438 + L2 LINE L2 2646 3299 -14 529 258 33 40 chr12 112807324 112807475 -31475014 + MIR SINE MIR 3 152 -110 421 218 30 10 chr12 112807570 112807671 -31474818 + MIR SINE MIR 160 262 0 2144 121 0 0 chr12 112807804 112808102 -31474387 + AluSg SINE Alu 1 298 -12 322 246 29 0 chr12 112808831 112808900 -31473589 + L2 LINE L2 3202 3272 0 214 280 160 0 chr12 112809037 112809137 -31473352 + MIR SINE MIR 100 215 -47 212 267 0 0 chr12 112809353 112809398 -31473091 + L2 LINE L2 3213 3257 -15 2073 136 0 10 chr12 112810353 112810654 -31471835 + AluSx SINE Alu 1 298 -14 5930 107 26 9 chr12 112810697 112811637 -31470852 - L1PB3 LINE L1 0 6154 5200 201 74 0 0 chr12 112811703 112811730 -31470759 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 1735 186 20 0 chr12 112811734 112812040 -31470449 - AluJb SINE Alu 0 312 1 425 217 45 16 chr12 112812052 112812240 -31470249 - L1MEc LINE L1 -5469 513 451 1613 184 3 32 chr12 112812272 112812581 -31469908 - AluJb SINE Alu -9 303 4 291 146 0 0 chr12 112812948 112812996 -31469493 - L1MEc LINE L1 -5652 418 371 2285 104 0 0 chr12 112813403 112813691 -31468798 - AluSc SINE Alu -21 288 1 23 0 0 0 chr12 112813694 112813717 -31468772 + AT_rich Low_complexity Low_complexity 1 23 0 520 196 13 19 chr12 112813745 112813903 -31468586 + CT-rich Low_complexity Low_complexity 1 157 0 1743 186 10 7 chr12 112813906 112814213 -31468276 - AluJo SINE Alu -4 308 1 674 201 33 152 chr12 112814213 112814457 -31468032 - MER58A DNA MER1_type -8 216 2 275 311 115 0 chr12 112814721 112814843 -31467646 - L2 LINE L2 -1 3312 3177 273 119 0 0 chr12 112814897 112814939 -31467550 + (TA)n Simple_repeat Simple_repeat 2 43 0 3152 148 26 5 chr12 112814952 112815064 -31467425 - L1M3 LINE L1 -403 5768 5660 2153 136 0 0 chr12 112815064 112815365 -31467124 - AluSq SINE Alu -12 301 1 3152 148 26 5 chr12 112815365 112815895 -31466594 - L1M3 LINE L1 -511 5660 5116 233 220 0 0 chr12 112816394 112816453 -31466036 + A-rich Low_complexity Low_complexity 2 60 0 2856 10 0 0 chr12 112816503 112816812 -31465677 + AluY SINE Alu 1 309 -2 1323 183 23 8 chr12 112816933 112817374 -31465115 + MLT1D LTR MaLR 1 505 0 1051 85 0 0 chr12 112817497 112817626 -31464863 + AluSq/x SINE Alu 1 129 -184 4002 106 2 12 chr12 112818045 112818604 -31463885 - L1PA14 LINE L1 0 6161 5609 1786 130 138 0 chr12 112819117 112819378 -31463111 - AluSx SINE Alu -3 299 3 1002 228 26 34 chr12 112819452 112819685 -31462804 - MIR SINE MIR -30 232 2 245 255 0 0 chr12 112819988 112820035 -31462454 + L2 LINE L2 3252 3298 -15 245 284 120 7 chr12 112820374 112820536 -31461953 - L1MC/D LINE L1 -439 5803 5662 334 280 144 81 chr12 112820961 112821645 -31460844 - L1M2 LINE L1 -5851 998 295 1597 62 20 0 chr12 112822353 112822548 -31459941 + AluSg/x SINE Alu 65 263 -47 1153 149 237 24 chr12 112823081 112823330 -31459159 - AluJb SINE Alu 0 302 1 21 36 0 0 chr12 112824704 112824732 -31457757 + AT_rich Low_complexity Low_complexity 1 28 0 359 193 219 17 chr12 112825012 112825131 -31457358 - L1ME2 LINE L1 -9 6155 6013 3121 167 37 52 chr12 112825302 112826033 -31456456 - L1MB8 LINE L1 0 6178 5459 576 211 18 0 chr12 112826133 112826242 -31456247 - FLAM_C SINE Alu -32 111 1 1581 161 51 17 chr12 112826632 112826924 -31455565 + AluJb SINE Alu 1 302 -10 34 42 0 0 chr12 112827359 112827407 -31455082 + AT_rich Low_complexity Low_complexity 1 48 0 1639 125 70 42 chr12 112827428 112827715 -31454774 - AluJb SINE Alu -17 295 1 517 264 18 25 chr12 112827772 112827952 -31454537 - L1MCa LINE L1 -4575 1851 1696 225 0 0 0 chr12 112828133 112828158 -31454331 + (A)n Simple_repeat Simple_repeat 1 25 0 2576 38 3 0 chr12 112828329 112828622 -31453867 - AluY SINE Alu -17 294 1 32 43 0 0 chr12 112828697 112828743 -31453746 + AT_rich Low_complexity Low_complexity 1 46 0 570 68 14 0 chr12 112829254 112829328 -31453161 + MADE1 DNA Mariner 1 75 -5 2019 101 0 60 chr12 112829328 112829646 -31452843 - AluSx SINE Alu -13 299 1 207 0 0 0 chr12 112830439 112830462 -31452027 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3020 177 34 19 chr12 112831864 112832479 -31450010 + L1ME1 LINE L1 5527 6150 -16 2174 132 0 0 chr12 112832486 112832781 -31449708 - AluSx SINE Alu -17 295 1 428 216 14 108 chr12 112833456 112833485 -31449004 - MIR SINE MIR -49 213 183 2025 163 49 0 chr12 112833485 112833811 -31448678 + MER2 DNA MER2_type 3 344 0 428 216 14 108 chr12 112833811 112833854 -31448635 - MIR SINE MIR -79 183 138 1620 145 0 0 chr12 112833854 112834088 -31448401 + MER46A DNA MER2_type 2 235 -1 428 216 14 108 chr12 112834088 112834162 -31448327 - MIR SINE MIR -124 138 80 216 333 15 0 chr12 112834168 112834234 -31448255 - L2 LINE L2 -66 3206 3140 688 292 122 23 chr12 112834297 112834756 -31447733 + L1P4 LINE L1 5350 5869 -294 41 21 0 0 chr12 112834988 112835036 -31447453 + AT_rich Low_complexity Low_complexity 1 48 0 380 318 162 28 chr12 112835781 112836045 -31446444 + L2 LINE L2 2905 3221 -51 510 279 120 82 chr12 112836045 112836213 -31446276 - MER102a DNA MER1_type -1088 329 169 1885 96 0 8 chr12 112836213 112836463 -31446026 - AluSx SINE Alu -9 303 56 510 279 120 82 chr12 112836463 112836610 -31445879 - MER102a DNA MER1_type -1248 169 2 380 318 162 28 chr12 112836610 112836666 -31445823 + L2 LINE L2 3221 3268 -4 24 0 0 0 chr12 112836936 112836960 -31445529 + AT_rich Low_complexity Low_complexity 1 24 0 2151 121 0 25 chr12 112837116 112837431 -31445058 + AluSx SINE Alu 1 307 -5 454 321 42 46 chr12 112837663 112837925 -31444564 + MIR SINE MIR 2 262 0 666 207 13 13 chr12 112837963 112838113 -31444376 - MIR SINE MIR 0 262 113 521 272 120 5 chr12 112838168 112838359 -31444130 + MIR SINE MIR 50 262 0 621 276 63 11 chr12 112838436 112838610 -31443879 - MER5A DNA MER1_type 0 189 7 2040 122 0 11 chr12 112838629 112838916 -31443573 + AluSx SINE Alu 21 304 -8 2367 78 0 0 chr12 112839111 112839392 -31443097 - AluSp SINE Alu -32 281 1 2510 87 0 0 chr12 112840207 112840519 -31441970 - AluSx SINE Alu 0 312 1 23 0 0 0 chr12 112840522 112840545 -31441944 + AT_rich Low_complexity Low_complexity 1 23 0 584 180 7 20 chr12 112840583 112840733 -31441756 + CT-rich Low_complexity Low_complexity 1 148 0 1743 186 10 7 chr12 112840736 112841043 -31441446 - AluJo SINE Alu -4 308 1 651 205 33 152 chr12 112841043 112841287 -31441202 - MER58A DNA MER1_type -8 216 2 289 311 115 0 chr12 112841551 112841673 -31440816 - L2 LINE L2 -1 3312 3177 369 62 0 0 chr12 112841725 112841773 -31440716 + (CATA)n Simple_repeat Simple_repeat 4 51 0 3081 149 26 5 chr12 112841786 112841898 -31440591 - L1M3 LINE L1 -403 5768 5660 2133 136 0 0 chr12 112841898 112842199 -31440290 - AluSq SINE Alu -12 301 1 3081 149 26 5 chr12 112842199 112842729 -31439760 - L1M3 LINE L1 -511 5660 5116 233 220 0 0 chr12 112843228 112843287 -31439202 + A-rich Low_complexity Low_complexity 2 60 0 2816 10 0 0 chr12 112843337 112843645 -31438844 + AluY SINE Alu 1 308 -3 1301 183 23 8 chr12 112843766 112844207 -31438282 + MLT1D LTR MaLR 1 505 0 1040 85 0 0 chr12 112844330 112844459 -31438030 + AluSq/x SINE Alu 1 129 -184 3436 117 2 19 chr12 112844878 112845441 -31437048 - L1PA14 LINE L1 0 6161 5609 1660 127 138 0 chr12 112845954 112846214 -31436275 - AluSx SINE Alu -4 298 3 1017 228 26 34 chr12 112846288 112846521 -31435968 - MIR SINE MIR -30 232 2 237 255 0 0 chr12 112846824 112846871 -31435618 + L2 LINE L2 3252 3298 -15 247 290 113 8 chr12 112847224 112847372 -31435117 - L1MC/D LINE L1 -439 5803 5662 389 281 142 80 chr12 112847797 112848488 -31434001 - L1M2 LINE L1 -5851 998 295 1598 66 20 0 chr12 112849183 112849381 -31433108 + AluSx SINE Alu 64 265 -47 185 275 174 14 chr12 112849605 112849674 -31432815 - L2 LINE L2 -4 3268 3189 983 148 236 28 chr12 112849914 112850164 -31432325 - AluJb SINE Alu 0 302 1 21 36 0 0 chr12 112851538 112851566 -31430923 + AT_rich Low_complexity Low_complexity 1 28 0 338 193 219 17 chr12 112851846 112851965 -31430524 - L1ME2 LINE L1 -9 6155 6013 186 235 59 20 chr12 112852069 112852120 -31430369 - MIR SINE MIR 0 262 210 3872 164 42 45 chr12 112852136 112853039 -31429450 - L1MB8 LINE L1 0 6178 5279 696 238 90 26 chr12 112853039 112853228 -31429261 - MIR SINE MIR -60 202 2 217 256 39 39 chr12 112853239 112853317 -31429172 - L3b LINE CR1 -318 1265 1188 396 245 255 33 chr12 112854818 112855030 -31427459 - MIR SINE MIR -2 260 2 24 32 0 0 chr12 112855413 112855444 -31427045 + AT_rich Low_complexity Low_complexity 1 31 0 802 222 93 16 chr12 112856747 112856995 -31425494 + L1MA9 LINE L1 6008 6274 -38 458 281 138 6 chr12 112857062 112857229 -31425260 - LTR50 LTR ERVL -133 662 474 226 264 11 11 chr12 112857283 112857374 -31425115 - L1M4 LINE L1 -3655 2491 2401 324 283 48 32 chr12 112857467 112857654 -31424835 - L1M4 LINE L1 -3786 2360 2171 521 248 0 8 chr12 112857901 112858018 -31424471 - L2 LINE L2 -7 3306 3191 209 302 10 62 chr12 112858332 112858428 -31424061 - L2 LINE L2 -1 3271 3181 480 284 116 53 chr12 112859274 112859499 -31422990 - LTR50 LTR ERVL -51 625 234 1101 31 8 0 chr12 112860212 112860341 -31422148 + BC200 scRNA scRNA 1 130 -70 188 0 74 0 chr12 112860341 112860368 -31422121 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 249 150 333 0 chr12 112860572 112860632 -31421857 - MADE1 DNA Mariner 0 80 1 219 36 0 0 chr12 112860969 112860997 -31421492 + (TG)n Simple_repeat Simple_repeat 2 29 0 2349 96 0 0 chr12 112861768 112862069 -31420420 - AluSc SINE Alu -8 301 1 26 30 0 0 chr12 112862312 112862345 -31420144 + AT_rich Low_complexity Low_complexity 1 33 0 6693 128 85 27 chr12 112862778 112863296 -31419193 + Tigger1 DNA MER2_type 2 489 -1929 1999 115 7 0 chr12 112863296 112863575 -31418914 + AluSx SINE Alu 1 281 -31 6693 128 85 27 chr12 112863575 112864223 -31418266 + Tigger1 DNA MER2_type 489 1235 -1183 975 131 85 0 chr12 112864206 112864382 -31418107 + Tigger1 DNA MER2_type 2119 2309 -109 * 1949 94 4 0 chr12 112864382 112864636 -31417853 - AluSp SINE Alu -12 301 47 2340 101 0 0 chr12 112864736 112865042 -31417447 - AluSg SINE Alu -4 306 1 1089 186 25 5 chr12 112865116 112865320 -31417169 - MER3 DNA MER1_type -1 208 1 1224 124 0 32 chr12 112865440 112865657 -31416832 + Tigger2 DNA MER2_type 1 210 -2508 787 171 55 0 chr12 112865656 112865802 -31416687 + Tigger2 DNA MER2_type 2564 2717 -1 * 399 248 73 24 chr12 112867948 112868154 -31414335 - HAL1 LINE L1 0 2507 2292 * 449 139 35 12 chr12 112868147 112868233 -31414256 - L1MC5 LINE L1 -50 7911 7824 357 296 11 67 chr12 112868263 112868442 -31414047 + L3 LINE CR1 576 744 -833 322 153 111 28 chr12 112868447 112868519 -31413970 + ERVL LTR ERVL 5136 5213 -551 262 320 32 64 chr12 112868551 112868770 -31413719 + L3 LINE CR1 804 1015 -562 1008 130 214 10 chr12 112868796 112868988 -31413501 + MER46A DNA MER2_type 1 231 -5 2046 118 6 46 chr12 112869032 112869209 -31413280 - AluSx SINE Alu -2 310 150 2325 82 0 0 chr12 112869209 112869502 -31412987 - AluSg SINE Alu -12 298 6 2046 118 6 46 chr12 112869502 112869647 -31412842 - AluSx SINE Alu -162 150 1 658 88 9 26 chr12 112869661 112869774 -31412715 - L1PA13 LINE L1 0 6163 6053 582 290 86 52 chr12 112869792 112870082 -31412407 + L3 LINE CR1 1051 1350 -227 393 254 105 41 chr12 112870089 112870204 -31412285 - MIR SINE MIR 0 262 156 639 261 133 0 chr12 112870204 112870430 -31412059 - MIR SINE MIR -2 260 5 393 254 105 41 chr12 112870430 112870555 -31411934 - MIR SINE MIR -106 156 17 255 367 100 7 chr12 112870571 112870721 -31411768 + L3 LINE CR1 1412 1575 -2 2626 14 0 0 chr12 112871323 112871650 -31410839 - AluYb8 SINE Alu 0 327 1 2255 104 0 10 chr12 112872428 112872736 -31409753 - AluSx SINE Alu -7 305 1 525 258 145 0 chr12 112872925 112873052 -31409437 + MIR SINE MIR 49 213 -49 396 0 0 0 chr12 112873052 112873096 -31409393 + (TG)n Simple_repeat Simple_repeat 2 45 0 525 258 145 0 chr12 112873096 112873154 -31409335 + MIR SINE MIR 213 261 -1 999 295 75 35 chr12 112873154 112873893 -31408596 + L2 LINE L2 2543 3313 0 1458 268 168 22 chr12 112874328 112875944 -31406545 - L1MEc LINE L1 -3127 3088 1268 21 0 0 0 chr12 112875975 112875996 -31406493 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 112878466 112878502 -31403987 + AT_rich Low_complexity Low_complexity 1 36 0 511 278 79 48 chr12 112879485 112879673 -31402816 - L1ME LINE L1 -406 5756 5575 354 98 0 0 chr12 112879673 112879724 -31402765 + (TA)n Simple_repeat Simple_repeat 1 51 0 511 278 79 48 chr12 112879724 112880152 -31402337 - L1ME LINE L1 -587 5575 5113 2112 75 43 3 chr12 112880152 112880434 -31402055 - AluSg SINE Alu -15 295 3 511 278 79 48 chr12 112880434 112880526 -31401963 - L1ME LINE L1 -1049 5113 5025 21 0 0 0 chr12 112885379 112885400 -31397089 + AT_rich Low_complexity Low_complexity 1 21 0 247 299 158 0 chr12 112885828 112885955 -31396534 - L2 LINE L2 0 3313 3167 263 333 184 34 chr12 112886141 112886348 -31396141 + MIR SINE MIR 14 251 -11 24 0 0 0 chr12 112886802 112886826 -31395663 + AT_rich Low_complexity Low_complexity 1 24 0 1024 173 43 35 chr12 112886946 112887177 -31395312 - MER46A DNA MER2_type -3 233 1 2423 77 3 0 chr12 112887895 112888195 -31394294 + AluSp SINE Alu 6 306 -7 295 271 188 0 chr12 112888620 112888716 -31393773 - L2 LINE L2 -4 3268 3155 250 235 0 99 chr12 112889284 112889365 -31393124 + L2 LINE L2 3155 3227 -86 24 96 0 0 chr12 112889807 112889880 -31392609 + AT_rich Low_complexity Low_complexity 1 73 0 22 0 0 0 chr12 112890210 112890232 -31392257 + AT_rich Low_complexity Low_complexity 1 22 0 438 272 95 26 chr12 112890512 112890744 -31391745 - L1ME LINE L1 -336 5785 5538 1849 158 3 23 chr12 112890775 112890956 -31391533 + AluSx SINE Alu 5 179 -133 2280 114 50 6 chr12 112890956 112891315 -31391174 - THE1C LTR MaLR 0 375 1 1849 158 3 23 chr12 112891315 112891443 -31391046 + AluSx SINE Alu 179 308 -4 2238 110 0 0 chr12 112891757 112892049 -31390440 - AluSg SINE Alu -18 292 1 213 267 0 0 chr12 112893004 112893049 -31389440 - L2 LINE L2 -15 3257 3213 225 280 160 0 chr12 112893265 112893365 -31389124 - MIR SINE MIR -47 215 100 327 246 29 0 chr12 112893502 112893571 -31388918 - L2 LINE L2 0 3272 3202 2146 121 0 0 chr12 112894300 112894598 -31387891 - AluSg SINE Alu -12 298 1 430 218 30 10 chr12 112894731 112894832 -31387657 - MIR SINE MIR 0 262 160 534 258 33 40 chr12 112894927 112895078 -31387411 - MIR SINE MIR -110 152 3 1741 244 165 35 chr12 112895347 112895819 -31386670 - L2 LINE L2 -14 3299 2890 2357 91 0 0 chr12 112895819 112896115 -31386374 + AluSx SINE Alu 1 296 -16 1741 244 165 35 chr12 112896115 112896612 -31385877 - L2 LINE L2 -423 2890 2215 22 35 0 0 chr12 112896760 112896789 -31385700 + AT_rich Low_complexity Low_complexity 1 29 0 648 235 7 0 chr12 112897761 112897910 -31384579 + MER33 DNA MER1_type 5 154 -170 520 204 152 0 chr12 112898005 112898137 -31384352 + MER3 DNA MER1_type 58 209 0 1650 250 154 25 chr12 112898249 112899214 -31383275 + L1MC4 LINE L1 6953 8042 0 290 346 45 28 chr12 112899826 112900005 -31382484 - L2 LINE L2 -2877 437 256 1767 146 20 33 chr12 112900608 112900909 -31381580 - AluJo SINE Alu -15 297 1 524 168 26 44 chr12 112902214 112902327 -31380162 - MER3 DNA MER1_type -69 140 30 263 290 210 0 chr12 112902345 112902445 -31380044 + L2 LINE L2 3150 3270 -2 331 289 47 34 chr12 112902568 112902717 -31379772 + MIR SINE MIR 1 151 -111 26 0 0 0 chr12 112903043 112903069 -31379420 + AT_rich Low_complexity Low_complexity 1 26 0 2336 71 22 22 chr12 112903204 112903515 -31378974 - AluY SINE Alu 0 311 1 1846 155 0 27 chr12 112903759 112904055 -31378434 - AluJo SINE Alu -12 300 13 23 54 0 0 chr12 112905873 112905910 -31376579 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr12 112905992 112906027 -31376462 + AT_rich Low_complexity Low_complexity 1 35 0 35 63 0 0 chr12 112906607 112906670 -31375819 + AT_rich Low_complexity Low_complexity 1 63 0 25 31 0 0 chr12 112908667 112908699 -31373790 + AT_rich Low_complexity Low_complexity 1 32 0 2549 179 86 10 chr12 112909755 112910407 -31372082 + Tigger7 DNA MER2_type 1 2585 -2 555 194 189 33 chr12 112911362 112911542 -31370947 + MIR SINE MIR 5 212 -50 21 0 0 0 chr12 112912010 112912031 -31370458 + AT_rich Low_complexity Low_complexity 1 21 0 448 266 202 12 chr12 112912377 112912802 -31369687 - L1ME LINE L1 -400 5762 5257 277 242 242 21 chr12 112915031 112915126 -31367363 + MER58A DNA MER1_type 1 116 0 2226 99 0 0 chr12 112915163 112915445 -31367044 - AluSx SINE Alu -30 282 1 248 247 215 11 chr12 112915445 112915538 -31366951 + MER58A DNA MER1_type 113 224 0 245 212 0 91 chr12 112915609 112915630 -31366859 + L2 LINE L2 3137 3158 -114 515 176 314 0 chr12 112915630 112915789 -31366700 - MER3 DNA MER1_type 0 209 1 245 212 0 91 chr12 112915789 112915833 -31366656 + L2 LINE L2 3158 3196 -76 258 262 0 48 chr12 112915900 112915984 -31366505 - MER5A DNA MER1_type -106 83 4 2030 127 10 0 chr12 112918063 112918354 -31364135 - AluSx SINE Alu -18 294 1 875 113 192 31 chr12 112918577 112918806 -31363683 + L1MB7 LINE L1 5910 6175 -9 29585 106 16 57 chr12 112919252 112922298 -31360191 - L1PA7 LINE L1 -3 6151 3522 2184 102 0 14 chr12 112922298 112922592 -31359897 - AluSq SINE Alu -23 290 1 29585 106 16 57 chr12 112922592 112925968 -31356521 - L1PA7 LINE L1 -2632 3522 9 3177 173 93 39 chr12 112926090 112926416 -31356073 - L1MB5 LINE L1 -59 6115 5808 1041 125 180 15 chr12 112926416 112926616 -31355873 - MER46A DNA MER2_type 0 236 4 3177 173 93 39 chr12 112926616 112926869 -31355620 - L1MB5 LINE L1 -366 5808 5570 477 14 0 106 chr12 112926869 112927011 -31355478 + (TA)n Simple_repeat Simple_repeat 2 128 0 3177 173 93 39 chr12 112927011 112927308 -31355181 - L1MB5 LINE L1 -604 5570 5191 780 256 21 56 chr12 112927564 112927798 -31354691 - MIR SINE MIR -6 256 31 779 197 171 4 chr12 112927798 112928053 -31354436 - Charlie5 DNA MER1_type 0 2624 26 198 227 106 45 chr12 112928934 112929000 -31353489 + MIR3 SINE MIR 125 194 -14 2011 127 3 38 chr12 112929278 112929593 -31352896 - AluSx SINE Alu -8 304 1 201 171 24 0 chr12 112930730 112930771 -31351718 + L2 LINE L2 3267 3308 -5 364 299 51 45 chr12 112931434 112931633 -31350856 - MIR3 SINE MIR -4 204 2 522 273 139 10 chr12 112931940 112932149 -31350340 + L2 LINE L2 1902 2137 -1177 212 273 0 18 chr12 112932327 112932382 -31350107 - L2 LINE L2 -38 3234 3181 2262 74 7 0 chr12 112932492 112932777 -31349712 + AluSp SINE Alu 1 287 -26 449 152 19 38 chr12 112932791 112932896 -31349593 - L1MA3 LINE L1 -73 6232 6130 3870 92 74 39 chr12 112932896 112933837 -31348652 - MER11A LTR ERVK -134 1132 1 183 80 0 0 chr12 112933869 112933894 -31348595 + (TG)n Simple_repeat Simple_repeat 1 25 0 200 308 17 52 chr12 112933895 112934067 -31348422 + C-rich Low_complexity Low_complexity 3 168 0 180 163 93 105 chr12 112934521 112934607 -31347882 - L2 LINE L2 -8 3305 3221 715 295 193 23 chr12 112934789 112935406 -31347083 - L2 LINE L2 -366 2948 2227 940 70 0 0 chr12 112985695 112985809 -31296680 + HERVK11 LTR ERVK 3505 3618 -4335 3759 113 6 6 chr12 112985809 112986320 -31296169 - MER9 LTR ERVK 0 511 1 34908 80 16 21 chr12 112986320 112991146 -31291343 - HERVK9 LTR ERVK 0 5916 1113 4806 49 2 0 chr12 112991147 112991714 -31290775 - HERVK9 LTR ERVK -5348 568 1 3832 94 26 8 chr12 112991714 112992216 -31290273 - MER9 LTR ERVK 0 511 1 20069 65 5 2 chr12 112992218 112995364 -31287125 + HERVK11 LTR ERVK 3615 6767 -1186 8526 50 0 0 chr12 112995349 112996346 -31286143 + HERVK11 LTR ERVK 6957 7953 0 * 6980 118 15 19 chr12 112996346 112997421 -31285068 + MER11C LTR ERVK 1 1071 0 314 331 25 38 chr12 112997489 112997646 -31284843 + MER5A DNA MER1_type 35 189 0 254 371 66 28 chr12 112998388 112998676 -31283813 - L2 LINE L2 -54 3218 2920 320 331 28 7 chr12 112998901 112999046 -31283443 + L2 LINE L2 2944 3091 -181 2079 142 0 10 chr12 112999784 113000086 -31282403 + AluSx SINE Alu 3 301 -11 3776 116 114 76 chr12 113000275 113000528 -31281961 + MER4D LTR ERV1 15 257 -615 1926 155 16 3 chr12 113000528 113000831 -31281658 + AluSx SINE Alu 1 307 -5 3776 116 114 76 chr12 113000831 113000981 -31281508 + MER4D LTR ERV1 257 400 -472 2345 89 10 16 chr12 113000981 113001285 -31281204 - AluSx SINE Alu -10 302 1 3776 116 114 76 chr12 113001285 113001707 -31280782 + MER4D LTR ERV1 400 872 0 285 282 82 51 chr12 113002243 113002457 -31280032 - MIR SINE MIR 0 262 33 2107 172 37 31 chr12 113002554 113003100 -31279389 - MLT2A2 LTR ERVL 0 554 1 199 330 11 33 chr12 113003276 113003367 -31279122 + MIR3 SINE MIR 111 199 -9 1957 167 0 0 chr12 113003455 113003760 -31278729 + AluJb SINE Alu 1 305 -7 680 208 78 25 chr12 113004584 113004916 -31277573 - LTR52 LTR ERVL -5 416 20 2336 100 0 3 chr12 113004916 113005216 -31277273 + AluSx SINE Alu 1 299 -13 680 208 78 25 chr12 113005216 113005234 -31277255 - LTR52 LTR ERVL -401 20 4 22 35 0 0 chr12 113006305 113006334 -31276155 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 113006546 113006567 -31275922 + AT_rich Low_complexity Low_complexity 1 21 0 251 194 171 47 chr12 113007745 113007874 -31274615 - L1ME4a LINE L1 -11 6110 5966 21 0 0 0 chr12 113007939 113007960 -31274529 + AT_rich Low_complexity Low_complexity 1 21 0 1720 236 93 37 chr12 113008394 113008933 -31273556 - MLT1K LTR MaLR -7 581 13 236 242 219 16 chr12 113009492 113009620 -31272869 + MIR SINE MIR 7 160 -102 304 340 57 19 chr12 113009656 113009815 -31272674 - MIR SINE MIR 0 262 98 2193 121 13 0 chr12 113010487 113010792 -31271697 - AluSg SINE Alu -1 309 1 24 32 0 0 chr12 113011530 113011561 -31270928 + AT_rich Low_complexity Low_complexity 1 31 0 207 69 0 0 chr12 113011764 113011793 -31270696 + (T)n Simple_repeat Simple_repeat 1 29 0 672 283 74 13 chr12 113012563 113012793 -31269696 - MIR SINE MIR -2 260 17 284 229 78 131 chr12 113013190 113013343 -31269146 - L2 LINE L2 0 3313 3169 244 250 73 62 chr12 113013417 113013513 -31268976 - L2 LINE L2 -48 3265 3169 22 35 0 0 chr12 113015288 113015317 -31267172 + AT_rich Low_complexity Low_complexity 1 29 0 2172 119 3 22 chr12 113016304 113016622 -31265867 - AluSq SINE Alu -1 312 1 297 0 0 0 chr12 113017445 113017478 -31265011 + (TG)n Simple_repeat Simple_repeat 2 34 0 207 228 20 59 chr12 113018049 113018150 -31264339 + C-rich Low_complexity Low_complexity 6 102 0 27 29 0 0 chr12 113018392 113018426 -31264063 + GC_rich Low_complexity Low_complexity 1 34 0 377 314 0 8 chr12 113018982 113019100 -31263389 + MIR SINE MIR 33 149 -113 209 313 0 0 chr12 113019311 113019375 -31263114 - L2 LINE L2 -8 3305 3242 2000 133 18 0 chr12 113019511 113019813 -31262676 + AluSg SINE Alu 1 307 0 1946 229 34 21 chr12 113020232 113020704 -31261785 + MER90 LTR ERV1 70 547 -67 873 99 16 0 chr12 113020772 113020893 -31261596 + L1PB4 LINE L1 6021 6143 -13 219 226 200 37 chr12 113020900 113021090 -31261399 - L2 LINE L2 -39 3274 3054 2132 76 0 0 chr12 113021913 113022190 -31260299 + L1PA8 LINE L1 5894 6170 -2 444 211 135 19 chr12 113023109 113023265 -31259224 - MIR SINE MIR -59 203 30 301 354 15 15 chr12 113023256 113023386 -31259103 + L3 LINE CR1 1399 1528 -49 * 22 0 0 0 chr12 113025100 113025122 -31257367 + AT_rich Low_complexity Low_complexity 1 22 0 322 265 119 53 chr12 113026132 113026283 -31256206 + MIR3 SINE MIR 42 202 -6 2263 97 17 0 chr12 113026501 113026800 -31255689 + AluSx SINE Alu 1 304 -8 2186 110 3 7 chr12 113027896 113028195 -31254294 - AluSx SINE Alu -14 298 1 2353 127 97 20 chr12 113028231 113028632 -31253857 - MSTB1 LTR MaLR 0 432 1 469 291 14 0 chr12 113029067 113029215 -31253274 - MIR SINE MIR 0 262 113 186 43 0 0 chr12 113029375 113029398 -31253091 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 315 172 31 148 chr12 113029657 113029785 -31252704 - MLT1F LTR MaLR -13 529 417 334 267 50 25 chr12 113029939 113030059 -31252430 - MLT1I LTR MaLR -267 142 20 1040 243 9 0 chr12 113030111 113030329 -31252160 + MER58A DNA MER1_type 2 221 -3 518 242 0 39 chr12 113030576 113030729 -31251760 - LTR67 LTR ERVL 0 557 411 237 343 90 8 chr12 113031088 113031222 -31251267 - MIR3 SINE MIR -43 165 21 535 278 71 71 chr12 113031984 113032362 -31250127 - MLT1K LTR MaLR -51 537 160 420 297 53 39 chr12 113032467 113032835 -31249654 + L2 LINE L2 2697 3069 -203 3731 106 14 43 chr12 113032984 113033032 -31249457 - LTR24B LTR ERV1 -7 569 521 1588 146 25 103 chr12 113033032 113033353 -31249136 - AluJo SINE Alu -16 296 1 3731 106 14 43 chr12 113033353 113033890 -31248599 - LTR24B LTR ERV1 -55 521 1 23 33 0 0 chr12 113034305 113034335 -31248154 + AT_rich Low_complexity Low_complexity 1 30 0 251 264 58 11 chr12 113034632 113034719 -31247770 + MIR SINE MIR 29 119 -143 206 231 77 0 chr12 113034748 113034800 -31247689 + MIR SINE MIR 21 76 -186 228 253 209 33 chr12 113034832 113034923 -31247566 + MIR SINE MIR 21 127 -135 545 209 6 23 chr12 113034928 113035100 -31247389 + CT-rich Low_complexity Low_complexity 4 172 0 1673 175 33 3 chr12 113035123 113035426 -31247063 - AluJo SINE Alu 0 312 1 277 283 80 0 chr12 113035427 113035468 -31247021 + MIR SINE MIR 119 155 -107 850 190 113 63 chr12 113035468 113035689 -31246800 + MER8 DNA MER2_type 4 235 -4 277 283 80 0 chr12 113035689 113035760 -31246729 + MIR SINE MIR 155 240 -22 285 200 0 40 chr12 113035936 113036036 -31246453 + C-rich Low_complexity Low_complexity 1 96 0 382 324 17 23 chr12 113036048 113036224 -31246265 + CT-rich Low_complexity Low_complexity 3 177 0 270 0 0 0 chr12 113037654 113037684 -31244805 + (TG)n Simple_repeat Simple_repeat 1 30 0 296 77 19 0 chr12 113037684 113037736 -31244753 + (GA)n Simple_repeat Simple_repeat 2 54 0 1592 192 0 14 chr12 113037738 113038024 -31244465 - AluJb SINE Alu -30 282 1 1522 206 3 28 chr12 113038110 113038430 -31244059 + AluJb SINE Alu 1 312 0 2172 135 0 0 chr12 113039366 113039670 -31242819 + AluSx SINE Alu 1 304 -8 2268 89 0 16 chr12 113040943 113041246 -31241243 + AluY SINE Alu 5 302 -9 1346 252 111 17 chr12 113041423 113041883 -31240606 + MLT1D LTR MaLR 3 505 0 2447 214 74 56 chr12 113042127 113042542 -31239947 - MER21B LTR ERV1 -112 751 345 2442 111 31 0 chr12 113042542 113042895 -31239594 + THE1B LTR MaLR 1 364 0 2447 214 74 56 chr12 113042895 113042921 -31239568 - MER21B LTR ERV1 -518 345 321 1831 148 33 103 chr12 113042921 113043347 -31239142 + MSTD LTR MaLR 1 396 0 2447 214 74 56 chr12 113043347 113043624 -31238865 - MER21B LTR ERV1 -542 321 19 189 74 0 0 chr12 113044659 113044686 -31237803 + (CA)n Simple_repeat Simple_repeat 1 27 0 2374 75 3 7 chr12 113045261 113045567 -31236922 + AluY SINE Alu 1 305 -6 288 51 0 0 chr12 113045580 113045619 -31236870 + Alu SINE Alu 37 75 -233 253 296 45 29 chr12 113045860 113046168 -31236321 + L1 LINE L1 3070 3382 -2764 480 235 16 65 chr12 113046188 113046202 -31236287 - MLT1I LTR MaLR -18 428 415 978 144 0 0 chr12 113046202 113046382 -31236107 + (CTATG)n Simple_repeat Simple_repeat 1 180 0 480 235 16 65 chr12 113046382 113046552 -31235937 - MLT1I LTR MaLR -31 415 232 1904 152 0 0 chr12 113046614 113046890 -31235599 - AluSx SINE Alu -36 276 1 599 282 76 65 chr12 113046943 113047326 -31235163 + LTR16B LTR ERVL 28 414 -50 337 255 90 10 chr12 113047351 113047451 -31235038 - MLT1I LTR MaLR -255 154 61 2278 142 51 40 chr12 113047505 113047797 -31234692 - MER65A LTR ERV1 -6 439 139 2381 97 0 0 chr12 113047797 113048097 -31234392 + AluSp SINE Alu 1 300 -13 2278 142 51 40 chr12 113048097 113048234 -31234255 - MER65A LTR ERV1 -306 139 5 293 309 149 40 chr12 113048254 113048476 -31234013 + MLT1L LTR MaLR 29 304 -311 2204 103 3 13 chr12 113048476 113048778 -31233711 + AluSq SINE Alu 6 304 -9 293 309 149 40 chr12 113048778 113048905 -31233584 + MLT1L LTR MaLR 304 416 -199 233 250 0 0 chr12 113049302 113049358 -31233131 - MIR SINE MIR -7 255 200 240 35 0 0 chr12 113049619 113049648 -31232841 + (T)n Simple_repeat Simple_repeat 1 29 0 2015 94 0 0 chr12 113049849 113050103 -31232386 - AluSx SINE Alu -58 254 1 516 200 15 85 chr12 113050152 113050282 -31232207 - AluJo SINE Alu -106 206 86 2876 3 3 0 chr12 113051132 113051437 -31231052 + AluYa5 SINE Alu 1 306 -5 2301 57 0 0 chr12 113051449 113051713 -31230776 + AluY SINE Alu 37 300 -11 341 281 196 0 chr12 113051807 113051960 -31230529 + MIR SINE MIR 48 230 -32 661 184 161 36 chr12 113052601 113052769 -31229720 - MER3 DNA MER1_type -7 202 14 2325 101 0 7 chr12 113052840 113053147 -31229342 + AluSg SINE Alu 1 305 -5 1290 291 107 37 chr12 113053546 113054808 -31227681 - L2 LINE L2 0 3313 1967 204 231 0 0 chr12 113055577 113055616 -31226873 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 251 272 0 78 chr12 113056144 113056247 -31226242 + L1M4 LINE L1 2351 2445 -3701 1722 178 3 14 chr12 113056720 113057013 -31225476 - AluJb SINE Alu -22 290 1 4732 183 47 72 chr12 113057220 113058217 -31224272 + L1MA6 LINE L1 5307 6278 -22 771 192 6 19 chr12 113058221 113058377 -31224112 + FRAM SINE Alu 9 162 -14 21 36 0 0 chr12 113059324 113059352 -31223137 + AT_rich Low_complexity Low_complexity 1 28 0 448 246 83 150 chr12 113059554 113059961 -31222528 - MLT1J LTR MaLR -23 488 109 324 292 35 89 chr12 113060435 113060637 -31221852 - MIR3 SINE MIR -3 205 15 211 300 50 12 chr12 113060637 113060717 -31221772 - MER5A DNA MER1_type 0 189 107 * 234 333 104 14 chr12 113060654 113060798 -31221691 + MER5A DNA MER1_type 32 188 -1 22 35 0 0 chr12 113062925 113062954 -31219535 + AT_rich Low_complexity Low_complexity 1 29 0 239 239 63 88 chr12 113063237 113063396 -31219093 - LTR67 LTR ERVL 0 557 403 264 258 58 42 chr12 113063555 113063675 -31218814 - MLT1K LTR MaLR -465 123 2 2425 103 27 46 chr12 113064189 113064491 -31217998 + THE1B LTR MaLR 1 296 -68 2524 61 0 16 chr12 113064491 113064802 -31217687 + AluY SINE Alu 1 306 -5 2425 103 27 46 chr12 113064802 113064869 -31217620 + THE1B LTR MaLR 296 363 -1 6646 113 30 34 chr12 113064976 113066051 -31216438 + MER11C LTR ERVK 1 1071 0 2485 97 0 0 chr12 113066051 113066372 -31216117 + HERVK11 LTR ERVK 1 321 -7632 * 4017 109 14 2 chr12 113066363 113067169 -31215320 + HERVK11 LTR ERVK 200 1078 -6875 2266 107 0 3 chr12 113067342 113067641 -31214848 + AluSx SINE Alu 1 298 -14 317 194 15 0 chr12 113069129 113069196 -31213293 + MER87 LTR ERV1 82 149 -392 1020 251 78 66 chr12 113069341 113069767 -31212722 + LTR8A LTR ERV1 121 667 -52 1858 131 62 10 chr12 113069768 113070059 -31212430 - AluSx SINE Alu -6 306 1 252 257 57 0 chr12 113070277 113070347 -31212142 - MIR3 SINE MIR -6 202 129 379 182 15 0 chr12 113071057 113071123 -31211366 + AluS SINE Alu 1 67 -233 321 167 0 0 chr12 113071123 113071177 -31211312 + L1MD3 LINE L1 7224 7277 -718 543 204 29 0 chr12 113071179 113071282 -31211207 + MLT1F1 LTR MaLR 2 107 -460 703 232 5 42 chr12 113071283 113071322 -31211167 + L1MD3 LINE L1 7380 7419 -576 1901 171 7 0 chr12 113071322 113071632 -31210857 + AluJo SINE Alu 1 312 0 703 232 5 42 chr12 113071632 113071782 -31210707 + L1MD3 LINE L1 7419 7562 -433 1031 153 0 0 chr12 113071797 113071947 -31210542 - FRAM SINE Alu -30 146 1 463 223 96 13 chr12 113071950 113072107 -31210382 + L1MD3 LINE L1 7555 7724 -271 430 294 11 75 chr12 113072365 113072475 -31210014 + L2 LINE L2 2889 2984 -329 2487 74 3 3 chr12 113072475 113072786 -31209703 - AluY SINE Alu 0 311 1 430 294 11 75 chr12 113072786 113072862 -31209627 + L2 LINE L2 2984 3063 -250 267 273 50 22 chr12 113072962 113073101 -31209388 + LTR16B LTR ERVL 248 390 -74 306 231 13 13 chr12 113073498 113073576 -31208913 + AluS SINE Alu 1 78 -225 969 290 57 27 chr12 113073724 113074200 -31208289 + L2 LINE L2 2812 3301 -12 528 269 216 14 chr12 113074204 113074341 -31208148 + L1ME4a LINE L1 5465 5573 -548 1987 122 36 0 chr12 113074341 113074620 -31207869 + AluJb SINE Alu 1 289 -23 324 0 0 0 chr12 113074620 113074656 -31207833 + (TG)n Simple_repeat Simple_repeat 2 37 0 528 269 216 14 chr12 113074656 113074933 -31207556 + L1ME4a LINE L1 5572 5964 -157 233 271 0 62 chr12 113074968 113075064 -31207425 - L1MC4 LINE L1 -1339 6703 6614 546 209 176 0 chr12 113076197 113076345 -31206144 + MIR SINE MIR 59 232 -30 2653 40 0 3 chr12 113076398 113076699 -31205790 + AluY SINE Alu 1 300 -11 1276 102 64 11 chr12 113076729 113076962 -31205527 + AluJb SINE Alu 87 329 0 284 281 21 0 chr12 113077020 113077116 -31205373 + MIR SINE MIR 145 242 -20 1750 175 56 28 chr12 113077769 113078124 -31204365 + MLT1A1 LTR MaLR 1 365 0 1506 168 105 14 chr12 113078175 113078461 -31204028 + AluJb SINE Alu 1 312 0 258 32 0 0 chr12 113079037 113079068 -31203421 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1984 159 7 0 chr12 113079068 113079537 -31202952 - AluJo SINE Alu 0 471 1 292 229 12 24 chr12 113079743 113079826 -31202663 - MIR SINE MIR -10 252 171 189 0 0 0 chr12 113080264 113080285 -31202204 + (TG)n Simple_repeat Simple_repeat 1 21 0 516 184 62 134 chr12 113080408 113080587 -31201902 - MER63A DNA MER1_type -44 166 1 326 164 30 0 chr12 113080769 113080836 -31201653 + L2 LINE L2 1730 1798 -1516 2208 108 7 7 chr12 113080844 113081151 -31201338 - AluSg SINE Alu -3 307 1 585 251 21 88 chr12 113081626 113081909 -31200580 - LTR67 LTR ERVL -9 548 285 372 270 22 44 chr12 113081966 113082103 -31200386 - LTR67 LTR ERVL -382 175 42 356 40 20 0 chr12 113082889 113082939 -31199550 + (CA)n Simple_repeat Simple_repeat 1 51 0 2345 94 3 0 chr12 113083146 113083444 -31199045 + AluSx SINE Alu 2 300 -12 4266 127 38 23 chr12 113084827 113085347 -31197142 - Tigger3(Golem) DNA MER2_type -1 3027 2491 2029 78 0 0 chr12 113085347 113085591 -31196898 - AluY SINE Alu -16 295 52 4266 127 38 23 chr12 113085591 113085810 -31196679 - Tigger3(Golem) DNA MER2_type -537 2491 2277 580 223 0 0 chr12 113085801 113085904 -31196585 - Tigger3(Golem) DNA MER2_type -2921 108 6 * 1641 200 66 24 chr12 113085924 113086304 -31196185 - MSTD LTR MaLR 0 396 1 6836 236 35 37 chr12 113086305 113087492 -31194997 - MSTD-int LTR MaLR 0 1735 550 2303 114 0 0 chr12 113087492 113087798 -31194691 - AluSg SINE Alu -4 306 1 6836 236 35 37 chr12 113087798 113088347 -31194142 - MSTD-int LTR MaLR -1185 550 2 911 228 18 12 chr12 113088349 113088574 -31193915 - MSTD LTR MaLR 0 396 194 524 185 66 0 chr12 113088608 113088728 -31193761 + MSTC LTR MaLR 1 136 -229 320 268 33 91 chr12 113089849 113090092 -31192397 + LTR37A-int LTR ERV1 1695 1923 -4878 810 191 72 0 chr12 113090104 113090256 -31192233 + MER2 DNA MER2_type 1 163 -182 1743 161 31 74 chr12 113090256 113090504 -31191985 - THE1C LTR MaLR 0 375 149 1971 72 0 0 chr12 113090504 113090740 -31191749 + AluY SINE Alu 76 311 0 1743 161 31 74 chr12 113090740 113090883 -31191606 - THE1C LTR MaLR -226 149 1 9284 116 62 65 chr12 113090883 113091651 -31190838 - THE1C-int LTR MaLR 0 1580 812 1874 88 23 4 chr12 113091651 113091914 -31190575 - L1PA8 LINE L1 0 6172 5905 9284 116 62 65 chr12 113091914 113092729 -31189760 - THE1C-int LTR MaLR -768 812 1 1540 140 117 51 chr12 113092729 113093080 -31189409 - THE1C LTR MaLR 0 375 2 896 182 57 0 chr12 113093081 113093257 -31189232 + MER2 DNA MER2_type 159 344 -1 2113 75 43 4 chr12 113093592 113093896 -31188593 - AluY SINE Alu 0 311 1 495 232 88 67 chr12 113094069 113094410 -31188079 + LTR37A-int LTR ERV1 1738 2085 -2851 327 245 0 91 chr12 113094702 113094845 -31187644 + LTR37A-int LTR ERV1 3985 4114 -533 1014 244 55 91 chr12 113094858 113095408 -31187081 + MER34 LTR ERV1 11 540 -2 2109 215 28 26 chr12 113095411 113095913 -31186576 + LTR37A-int LTR ERV1 4114 4616 -31 592 291 54 0 chr12 113096189 113096391 -31186098 + MER110A LTR ERV1 212 424 -44 3372 142 143 22 chr12 113096391 113097020 -31185469 + MER50 LTR ERV1 1 705 -29 318 120 21 5 chr12 113097027 113097095 -31185394 + MER110A LTR ERV1 399 468 0 1009 166 39 88 chr12 113097114 113097445 -31185044 - LTR37A LTR ERV1 -109 317 3 339 292 15 23 chr12 113097446 113097576 -31184913 - MIR SINE MIR -28 234 106 1021 174 125 64 chr12 113097770 113098097 -31184392 + LTR37A LTR ERV1 78 424 -2 1257 227 63 72 chr12 113098718 113099163 -31183326 - MLT1K LTR MaLR -1 587 147 2242 31 0 0 chr12 113099216 113099477 -31183012 + L1PA3 LINE L1 5887 6147 -8 806 190 82 22 chr12 113099716 113099948 -31182541 - Charlie4a DNA MER1_type 0 508 263 1990 152 3 3 chr12 113099949 113100258 -31182231 - AluJb SINE Alu -3 309 1 1938 145 3 7 chr12 113100287 113100576 -31181913 + AluJo SINE Alu 1 288 -24 2062 175 70 10 chr12 113100707 113101107 -31181382 - MSTB LTR MaLR -2 424 1 282 29 0 0 chr12 113101217 113101252 -31181237 + (GGGAGA)n Simple_repeat Simple_repeat 6 40 0 233 311 0 0 chr12 113101728 113101789 -31180700 + A-rich Low_complexity Low_complexity 3 63 0 1946 188 54 12 chr12 113101994 113102403 -31180086 + MLT1C LTR MaLR 42 467 0 412 148 65 0 chr12 113102730 113102899 -31179590 + (TA)n Simple_repeat Simple_repeat 1 180 0 611 281 53 0 chr12 113102913 113103116 -31179373 + Charlie8 DNA MER1_type 74 263 -2154 802 255 9 13 chr12 113103190 113103421 -31179068 + MIR SINE MIR 5 234 -28 1903 193 72 25 chr12 113104362 113104808 -31177681 + MLT1C LTR MaLR 1 467 0 1660 171 36 0 chr12 113104960 113105240 -31177249 - AluJb SINE Alu -22 290 1 246 234 0 0 chr12 113105261 113105338 -31177151 + L1MA10 LINE L1 6258 6334 0 450 279 95 46 chr12 113106184 113106446 -31176043 + L1M4 LINE L1 2608 2882 -3264 1996 217 85 14 chr12 113107527 113108033 -31174456 + MLT1F LTR MaLR 1 542 0 2569 92 3 39 chr12 113108315 113108704 -31173785 + THE1C LTR MaLR 1 375 0 1744 140 56 18 chr12 113109159 113109444 -31173045 - AluJb SINE Alu -16 296 1 448 368 24 0 chr12 113109605 113109814 -31172675 - MIR SINE MIR -35 227 14 305 193 148 11 chr12 113110179 113110267 -31172222 - MIR3 SINE MIR -6 202 103 509 214 0 0 chr12 113110322 113110420 -31172069 + MIR SINE MIR 57 154 -108 248 79 0 0 chr12 113110424 113110462 -31172027 + MADE1 DNA Mariner 6 43 -37 373 153 0 56 chr12 113110533 113110605 -31171884 + MLT1A1-int LTR MaLR 1548 1615 -36 32 26 0 0 chr12 113111015 113111054 -31171435 + AT_rich Low_complexity Low_complexity 1 39 0 508 260 6 41 chr12 113111093 113111262 -31171227 - MIR SINE MIR -77 185 23 210 250 0 0 chr12 113112282 113112326 -31170163 + MIR SINE MIR 109 152 -56 * 481 296 112 0 chr12 113112325 113112521 -31169968 + MIR SINE MIR 9 226 -36 477 268 134 6 chr12 113112639 113112818 -31169671 - MIR SINE MIR 0 262 61 999 218 46 40 chr12 113113640 113113943 -31168546 - L1MC5 LINE L1 -34 7927 7623 3533 47 5 20 chr12 113113944 113114390 -31168099 - L1PA7 LINE L1 -6 6148 5710 1090 133 4 133 chr12 113114849 113114872 -31167617 - AluJo SINE Alu -9 303 279 2093 134 36 38 chr12 113114872 113115237 -31167252 + THE1B LTR MaLR 1 364 0 1090 133 4 133 chr12 113115237 113115461 -31167028 - AluJo SINE Alu -33 279 88 400 167 0 0 chr12 113115558 113115618 -31166871 - AluJ/FLAM SINE Alu -251 61 2 1514 262 95 44 chr12 113115649 113116623 -31165866 - HERV16 LTR ERVL -3911 1085 3 1157 256 47 34 chr12 113116630 113116871 -31165618 - LTR16A LTR ERVL -7 443 194 1754 189 36 19 chr12 113116871 113117230 -31165259 + MLT1A1 LTR MaLR 1 365 0 1157 256 47 34 chr12 113117230 113117375 -31165114 - LTR16A LTR ERVL -256 194 52 519 265 73 40 chr12 113117379 113117595 -31164894 + MLT1H LTR MaLR 14 289 -260 2003 139 11 69 chr12 113117769 113117923 -31164566 + MER1B DNA MER1_type 1 162 -2550 2177 112 3 10 chr12 113117923 113118218 -31164271 + AluSg SINE Alu 1 293 -17 2003 139 11 69 chr12 113118218 113118423 -31164066 + MER1B DNA MER1_type 162 339 0 414 206 39 12 chr12 113118453 113118561 -31163928 + MLT1H LTR MaLR 454 546 -3 243 203 0 34 chr12 113119033 113119092 -31163397 + L2 LINE L2 3216 3272 0 489 250 141 21 chr12 113119395 113119587 -31162902 + MIR SINE MIR 48 262 0 240 283 53 26 chr12 113120477 113120590 -31161899 + MIR SINE MIR 67 182 -80 288 0 0 0 chr12 113120987 113121019 -31161470 + (CAA)n Simple_repeat Simple_repeat 2 33 0 361 318 38 8 chr12 113121148 113121280 -31161209 - LTR33 LTR ERVL -364 157 22 187 290 60 40 chr12 113121530 113121630 -31160859 + MIR SINE MIR 24 125 -137 1134 272 69 5 chr12 113121632 113122011 -31160478 - LTR16C LTR ERVL 0 491 89 273 274 135 43 chr12 113122232 113122359 -31160130 - MIR SINE MIR -69 139 11 287 91 0 0 chr12 113122714 113122758 -31159731 - MER20B DNA MER1_type -32 751 708 2201 149 14 40 chr12 113122796 113123100 -31159389 - L1MB3 LINE L1 0 6183 5873 928 103 29 11 chr12 113123100 113123274 -31159215 + CT-rich Low_complexity Low_complexity 2 178 0 1982 133 18 0 chr12 113123276 113123561 -31158928 - AluSx SINE Alu -20 292 3 2201 149 14 40 chr12 113123561 113123682 -31158807 - L1MB3 LINE L1 -311 5872 5766 1050 224 5 0 chr12 113123682 113123883 -31158606 - L1PA16 LINE L1 -21 6145 5944 * 1696 134 4 19 chr12 113123858 113124126 -31158363 - L1MB3 LINE L1 -384 5799 5536 1175 266 156 32 chr12 113124126 113124691 -31157798 - MER20B DNA MER1_type -142 641 7 217 273 62 56 chr12 113125235 113125396 -31157093 + MIR SINE MIR 20 181 -81 1825 141 0 0 chr12 113125462 113125746 -31156743 + L1PA13 LINE L1 4796 5079 -1067 242 135 0 0 chr12 113125743 113125780 -31156709 - L1P LINE L1 -786 5382 5346 * 5799 85 7 29 chr12 113125780 113126606 -31155883 + L1PA13 LINE L1 5337 6144 -19 2014 114 29 26 chr12 113126618 113126925 -31155564 + AluSp SINE Alu 1 308 -5 2547 168 18 13 chr12 113126946 113127398 -31155091 - MLT2C2 LTR ERVL 0 464 11 201 263 0 18 chr12 113127992 113128049 -31154440 - MIR SINE MIR -57 205 150 1988 149 0 3 chr12 113129253 113129549 -31152940 - AluSx SINE Alu -17 295 1 221 326 51 10 chr12 113129549 113129647 -31152842 - MIR SINE MIR -59 203 102 673 274 49 51 chr12 113129945 113130335 -31152154 - LTR16B LTR ERVL -74 390 2 851 211 10 21 chr12 113130533 113130727 -31151762 + MIR SINE MIR 11 202 -60 26 0 0 0 chr12 113130963 113130989 -31151500 + AT_rich Low_complexity Low_complexity 1 26 0 2045 102 0 7 chr12 113131324 113131599 -31150890 - AluSg SINE Alu -16 294 22 461 310 88 30 chr12 113132016 113132345 -31150144 - L1MC4a LINE L1 -1897 5911 5564 588 226 0 0 chr12 113132363 113132518 -31149971 + (TATAG)n Simple_repeat Simple_repeat 1 155 0 343 227 27 17 chr12 113132614 113132763 -31149726 + MIR SINE MIR 32 238 -24 267 281 73 10 chr12 113133597 113133693 -31148796 + MIR SINE MIR 49 150 -112 594 306 119 32 chr12 113133708 113134110 -31148379 - MLT1K LTR MaLR -11 577 141 278 219 78 0 chr12 113134765 113134829 -31147660 + MIR SINE MIR 73 141 -121 2262 84 0 7 chr12 113134830 113135126 -31147363 - AluY SINE Alu -17 294 1 680 209 144 32 chr12 113135742 113135929 -31146560 - MER3 DNA MER1_type 0 209 2 223 291 155 0 chr12 113136194 113136297 -31146192 - MIR SINE MIR -37 225 107 345 279 108 16 chr12 113136627 113136756 -31145733 + MIR SINE MIR 12 152 -110 23 68 0 0 chr12 113137077 113137121 -31145368 + AT_rich Low_complexity Low_complexity 1 44 0 237 33 0 0 chr12 113137755 113137785 -31144704 + (TG)n Simple_repeat Simple_repeat 2 31 0 507 283 35 7 chr12 113138226 113138371 -31144118 + MLT1I LTR MaLR 33 181 -228 331 313 53 13 chr12 113138607 113138757 -31143732 + MIR SINE MIR 32 187 -75 252 59 0 0 chr12 113138880 113138914 -31143575 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 186 103 0 0 chr12 113138967 113138996 -31143493 + (GA)n Simple_repeat Simple_repeat 1 29 0 542 235 10 0 chr12 113139039 113139137 -31143352 + MER81 DNA DNA 11 109 -5 240 59 0 0 chr12 113139137 113139171 -31143318 + (TG)n Simple_repeat Simple_repeat 1 34 0 183 340 21 43 chr12 113139243 113139384 -31143105 - L2 LINE L2 -683 2631 2494 270 0 0 0 chr12 113140311 113140350 -31142139 + L1PA4 LINE L1 6117 6155 0 3604 103 90 11 chr12 113140437 113141002 -31141487 + MER4B LTR ERV1 1 610 0 400 282 4 137 chr12 113142006 113142247 -31140242 - MIR SINE MIR -31 231 23 829 301 126 32 chr12 113142267 113142854 -31139635 - L2 LINE L2 -410 2904 2263 1620 211 30 42 chr12 113142883 113143350 -31139139 - MLT1C LTR MaLR 0 467 5 186 319 93 11 chr12 113143409 113143591 -31138898 - L2 LINE L2 -1133 2181 1985 30 45 0 0 chr12 113143680 113143724 -31138765 + AT_rich Low_complexity Low_complexity 1 44 0 1805 169 10 13 chr12 113143807 113144120 -31138369 - AluJo SINE Alu 0 312 1 1029 256 0 0 chr12 113146118 113146329 -31136160 - MER58A DNA MER1_type -12 212 2 197 315 174 28 chr12 113146329 113146542 -31135947 + L2 LINE L2 2731 2974 -340 2269 135 30 25 chr12 113147242 113147604 -31134885 + THE1B LTR MaLR 1 364 0 288 301 65 8 chr12 113147637 113147760 -31134729 - MIR SINE MIR -2 260 131 1123 246 107 42 chr12 113147760 113148162 -31134327 - MLT1F1 LTR MaLR 0 567 140 726 175 98 88 chr12 113148169 113148363 -31134126 + MLT1A1 LTR MaLR 1 196 -169 431 310 0 16 chr12 113148433 113148562 -31133927 - MLT1F1 LTR MaLR -466 127 1 337 277 118 0 chr12 113148563 113148682 -31133807 - MIR SINE MIR -128 134 2 249 206 32 16 chr12 113148682 113148742 -31133747 - MER5B DNA MER1_type -114 64 4 439 213 234 0 chr12 113148754 113148895 -31133594 - MER5A DNA MER1_type -7 182 9 195 167 0 0 chr12 113149000 113149042 -31133447 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 215 268 18 0 chr12 113149131 113149187 -31133302 + L2 LINE L2 3001 3057 -215 414 278 0 0 chr12 113149268 113149365 -31133124 - MER91B DNA MER1_type 0 190 94 41 36 0 0 chr12 113149396 113149451 -31133038 + AT_rich Low_complexity Low_complexity 1 55 0 2547 51 3 0 chr12 113149802 113150098 -31132391 + AluY SINE Alu 1 297 -14 349 273 31 19 chr12 113150787 113150948 -31131541 + L1ME4a LINE L1 5941 6103 -18 303 296 93 0 chr12 113150973 113151081 -31131408 - L2 LINE L2 -33 3239 3122 214 283 17 0 chr12 113151083 113151143 -31131346 + MER91B DNA MER1_type 31 91 -99 47 61 0 0 chr12 113151305 113151387 -31131102 + AT_rich Low_complexity Low_complexity 1 82 0 1316 309 91 27 chr12 113151460 113151970 -31130519 + L2 LINE L2 2359 2959 -354 1923 210 44 101 chr12 113151970 113152542 -31129947 - MLT1F LTR MaLR 0 542 4 1316 309 91 27 chr12 113152542 113152919 -31129570 + L2 LINE L2 2959 3311 -2 420 180 0 149 chr12 113153717 113153878 -31128611 - LTR37B LTR ERV1 0 468 332 276 30 0 0 chr12 113153888 113153921 -31128568 + (CA)n Simple_repeat Simple_repeat 2 34 0 195 184 0 0 chr12 113153925 113153963 -31128526 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 557 300 57 24 chr12 113154327 113154537 -31127952 - MIR SINE MIR -15 247 31 847 209 9 62 chr12 113154909 113155134 -31127355 + MER96B DNA MER1_type? 43 255 -162 470 211 56 56 chr12 113155265 113155407 -31127082 - L1ME3A LINE L1 -29 6141 6000 374 301 82 3 chr12 113156334 113156530 -31125959 + MIR SINE MIR 50 262 0 942 266 40 72 chr12 113156788 113157075 -31125414 + LTR16A1 LTR ERVL 43 313 -144 1672 172 0 35 chr12 113157075 113157389 -31125100 - AluJb SINE Alu -9 303 1 942 266 40 72 chr12 113157389 113157529 -31124960 + LTR16A1 LTR ERVL 313 456 -1 590 259 78 120 chr12 113158038 113158420 -31124069 - MLT1J LTR MaLR 0 511 146 226 186 0 23 chr12 113158473 113158516 -31123973 - MLT1J LTR MaLR -467 44 3 689 281 17 21 chr12 113159849 113160110 -31122379 - MIR SINE MIR -2 260 3 193 274 0 0 chr12 113160376 113160427 -31122062 + L2 LINE L2 3217 3267 -5 234 0 0 0 chr12 113160817 113160843 -31121646 + (TG)n Simple_repeat Simple_repeat 2 27 0 515 224 6 0 chr12 113163545 113163719 -31118770 + (TG)n Simple_repeat Simple_repeat 2 176 0 582 218 0 0 chr12 113163754 113164039 -31118450 + (TG)n Simple_repeat Simple_repeat 1 285 0 392 222 11 11 chr12 113164096 113164186 -31118303 - MER5B DNA MER1_type -14 164 75 189 241 0 0 chr12 113164497 113164551 -31117938 + CT-rich Low_complexity Low_complexity 3 56 0 306 269 93 0 chr12 113164558 113164666 -31117823 - L2 LINE L2 -5 3308 3191 420 281 17 67 chr12 113165065 113165303 -31117186 - L1ME3A LINE L1 -215 5955 5730 2387 77 0 17 chr12 113165303 113165603 -31116886 - AluSc SINE Alu -11 298 4 722 180 0 0 chr12 113165739 113165850 -31116639 + Tigger3(Golem) DNA MER2_type 2919 3029 0 3267 119 30 104 chr12 113165850 113165916 -31116573 + L1MA6 LINE L1 5380 5449 -851 5485 56 19 1 chr12 113165916 113166592 -31115897 - LTR12 LTR ERV1 0 688 1 3267 119 30 104 chr12 113166592 113167266 -31115223 + L1MA6 LINE L1 5449 6065 -235 1211 126 33 104 chr12 113167262 113167532 -31114957 + L1MB8 LINE L1 5928 6178 0 * 277 268 190 45 chr12 113168375 113168554 -31113935 - MIR SINE MIR -26 236 32 227 319 35 0 chr12 113168650 113168763 -31113726 + MIR3 SINE MIR 65 181 -27 311 264 132 0 chr12 113168950 113169041 -31113448 + MIR SINE MIR 50 152 -110 376 229 12 0 chr12 113169600 113169683 -31112806 + MIR SINE MIR 108 191 -71 814 298 59 11 chr12 113170018 113170290 -31112199 - MLT1J LTR MaLR -42 469 185 651 315 5 11 chr12 113170322 113170522 -31111967 - MLT1J LTR MaLR -286 188 1 24 32 0 0 chr12 113170580 113170611 -31111878 + AT_rich Low_complexity Low_complexity 1 31 0 1062 184 14 32 chr12 113170643 113170861 -31111628 - AluJo SINE Alu -94 218 5 357 141 35 0 chr12 113171424 113171509 -31110980 + GA-rich Low_complexity Low_complexity 1 88 0 284 197 16 0 chr12 113171607 113171668 -31110821 - MLT1K LTR MaLR -5 583 522 548 287 55 0 chr12 113171819 113171983 -31110506 - MLT1K LTR MaLR -414 174 2 431 122 0 12 chr12 113172002 113172084 -31110405 + (GA)n Simple_repeat Simple_repeat 2 82 0 356 242 12 12 chr12 113172151 113172312 -31110177 + GA-rich Low_complexity Low_complexity 1 161 0 183 392 0 10 chr12 113173632 113173734 -31108755 + MIR SINE MIR 47 147 -115 1018 163 29 67 chr12 113174047 113174287 -31108202 - L1MB7 LINE L1 0 6184 5954 725 188 97 17 chr12 113174501 113174677 -31107812 + MER33 DNA MER1_type 2 191 -133 1614 47 5 0 chr12 113174784 113174975 -31107514 - LTR5 LTR ERVK -777 192 1 301 256 111 43 chr12 113175276 113175393 -31107096 - L2 LINE L2 -2 3270 3146 1701 215 89 5 chr12 113175648 113176030 -31106459 + LTR40c LTR ERVL 50 463 -2 1615 195 27 39 chr12 113176778 113177112 -31105377 + MER58B DNA MER1_type 1 330 -11 355 242 227 15 chr12 113177118 113177250 -31105239 - MER5A DNA MER1_type -2 187 28 185 380 33 24 chr12 113177839 113178052 -31104437 + L2 LINE L2 2870 3084 -188 287 271 42 42 chr12 113178371 113178489 -31104000 - MIR SINE MIR -64 144 27 279 0 0 0 chr12 113179060 113179091 -31103398 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 608 212 0 0 chr12 113179094 113179193 -31103296 + AluJ/FLAM SINE Alu 1 99 -213 237 324 101 36 chr12 113179429 113179648 -31102841 - L2 LINE L2 -174 3098 2866 265 384 38 8 chr12 113179744 113179877 -31102612 - L2 LINE L2 -9 3263 3127 310 329 13 34 chr12 113180032 113180151 -31102338 + MIR SINE MIR 2 119 -143 2194 122 36 28 chr12 113180151 113180512 -31101977 + THE1B LTR MaLR 1 364 0 310 329 13 34 chr12 113180512 113180541 -31101948 + MIR SINE MIR 119 147 -115 531 280 60 33 chr12 113181435 113181568 -31100921 + MIR SINE MIR 5 146 -116 1781 163 3 17 chr12 113181568 113181863 -31100626 + AluJo SINE Alu 1 291 -21 531 280 60 33 chr12 113181863 113181911 -31100578 + MIR SINE MIR 146 191 -71 391 329 33 43 chr12 113181967 113182177 -31100312 - L2 LINE L2 0 3272 3065 310 365 13 6 chr12 113182181 113182340 -31100149 + (TGG)n Simple_repeat Simple_repeat 1 160 0 * 377 283 5 63 chr12 113182229 113182420 -31100069 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 313 309 0 10 chr12 113182379 113182476 -31100013 + (TGG)n Simple_repeat Simple_repeat 1 96 0 * 2057 137 20 0 chr12 113183894 113184193 -31098296 - AluSx SINE Alu -7 305 1 3406 166 16 25 chr12 113184199 113184872 -31097617 - L1MA7 LINE L1 0 6291 5625 233 266 47 0 chr12 113184882 113184946 -31097543 - MIR3 SINE MIR -32 176 110 516 243 70 56 chr12 113185002 113185216 -31097273 - MIR SINE MIR -10 252 36 519 150 16 0 chr12 113185319 113185423 -31097066 + MER5A DNA MER1_type 4 109 -80 273 311 0 29 chr12 113185485 113185588 -31096901 + MIR SINE MIR 89 188 -74 300 68 23 0 chr12 113186834 113186878 -31095611 - MADE1 DNA Mariner -1 79 35 254 231 112 22 chr12 113186900 113187034 -31095455 + MIR SINE MIR 46 191 -71 2349 94 0 3 chr12 113187194 113187493 -31094996 + AluSc SINE Alu 1 298 -11 192 335 53 33 chr12 113187574 113187726 -31094763 - L2 LINE L2 -9 3263 3109 639 191 7 7 chr12 113188129 113188270 -31094219 + L1ME1 LINE L1 5756 5896 -270 453 236 135 54 chr12 113188273 113188570 -31093919 - L1ME LINE L1 -585 5577 5257 270 261 99 28 chr12 113188616 113188758 -31093731 + MLT1H1 LTR MaLR 291 442 -113 185 300 33 0 chr12 113188858 113188918 -31093571 + MIR SINE MIR 48 109 -153 405 239 217 7 chr12 113189030 113189168 -31093321 - MIR SINE MIR -77 185 19 1226 274 110 8 chr12 113189931 113190604 -31091885 - L2 LINE L2 -1 3312 2560 1321 179 7 62 chr12 113190737 113191010 -31091479 + AluJo SINE Alu 1 258 -54 374 191 0 0 chr12 113191018 113191112 -31091377 - Zaphod DNA AcHobo -77 3954 3861 2309 72 10 0 chr12 113191383 113191675 -31090814 - AluY SINE Alu -16 295 1 4558 171 42 16 chr12 113191769 113192738 -31089751 - L1MB8 LINE L1 0 6178 5185 5720 125 19 30 chr12 113192925 113193899 -31088590 - Tigger3b DNA MER2_type -266 965 2 768 171 63 6 chr12 113193899 113194074 -31088415 - L1 LINE L1 -764 5382 5198 * 1950 167 68 0 chr12 113194067 113194462 -31088027 - L1 LINE L1 -784 5362 4941 1187 195 13 35 chr12 113194495 113194726 -31087763 + AluJo SINE Alu 67 292 -20 2449 139 10 7 chr12 113194741 113195145 -31087344 - L1 LINE L1 -1191 4955 4551 858 176 3 10 chr12 113195898 113196213 -31086276 + (CCA)n Simple_repeat Simple_repeat 1 312 0 344 296 6 0 chr12 113196176 113196352 -31086137 + (CACCAT)n Simple_repeat Simple_repeat 1 177 0 * 246 143 0 0 chr12 113197040 113197089 -31085400 + (A)n Simple_repeat Simple_repeat 1 49 0 2392 115 3 6 chr12 113197554 113197894 -31084595 - L1PB3 LINE L1 -2 6152 5814 7688 65 10 2 chr12 113198713 113199672 -31082817 - LTR5 LTR ERVK 0 969 3 2028 117 52 0 chr12 113200302 113200592 -31081897 + AluSx SINE Alu 1 305 -7 705 237 95 41 chr12 113200618 113200906 -31081583 + L1M3 LINE L1 4323 4594 -1586 186 43 0 0 chr12 113200906 113200929 -31081560 + (TG)n Simple_repeat Simple_repeat 1 23 0 705 237 95 41 chr12 113200929 113201661 -31080828 + L1M3 LINE L1 4594 5448 -732 403 253 42 83 chr12 113202070 113202335 -31080154 + HsTC2 DNA Tc2 31 284 -1614 948 283 27 3 chr12 113202372 113202669 -31079820 + HsTC2 DNA Tc2 522 825 -1073 691 275 71 4 chr12 113202691 113202931 -31079558 + MIR SINE MIR 5 260 -2 529 192 0 10 chr12 113203175 113203274 -31079215 - AluJ/FLAM SINE Alu -214 98 1 944 189 88 9 chr12 113203274 113203502 -31078987 - Charlie4 DNA MER1_type -1686 275 30 391 297 0 65 chr12 113204752 113204890 -31077599 + MIR SINE MIR 23 151 -111 213 39 0 0 chr12 113205583 113205609 -31076880 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 229 328 37 15 chr12 113206048 113206182 -31076307 - L2 LINE L2 0 3313 3177 1457 205 92 15 chr12 113206401 113206738 -31075751 - MLT1A1 LTR MaLR -1 364 2 236 53 26 0 chr12 113207218 113207256 -31075233 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 858 67 0 0 chr12 113207256 113207360 -31075129 - L1PA10 LINE L1 -18 6150 6047 316 339 93 14 chr12 113208557 113208837 -31073652 + L2 LINE L2 2448 2749 -565 345 330 59 29 chr12 113208875 113209114 -31073375 + L2 LINE L2 2836 3081 -191 250 247 86 11 chr12 113209733 113209826 -31072663 - L2 LINE L2 -16 3256 3157 938 163 7 0 chr12 113210070 113210217 -31072272 - AluSg/x SINE Alu -39 273 126 2052 135 10 3 chr12 113210218 113210515 -31071974 - AluJo SINE Alu -13 299 1 292 229 12 24 chr12 113210721 113210804 -31071685 - MIR SINE MIR -10 252 171 189 0 0 0 chr12 113211241 113211262 -31071227 + (TG)n Simple_repeat Simple_repeat 1 21 0 452 197 62 129 chr12 113211388 113211566 -31070923 - MER63A DNA MER1_type -44 166 1 317 164 45 0 chr12 113211749 113211816 -31070673 + L2 LINE L2 1730 1799 -1515 2228 108 7 7 chr12 113211823 113212129 -31070360 - AluSg SINE Alu -4 306 1 585 251 21 88 chr12 113212604 113212887 -31069602 - LTR67 LTR ERVL -9 548 285 390 259 127 25 chr12 113212944 113213102 -31069387 - LTR67 LTR ERVL -382 175 2 31 0 0 0 chr12 113213380 113213411 -31069078 + GC_rich Low_complexity Low_complexity 1 31 0 669 291 15 0 chr12 113213657 113213856 -31068633 + HsTC2 DNA Tc2 624 825 -1073 691 275 71 4 chr12 113213878 113214118 -31068371 + MIR SINE MIR 5 260 -2 2881 127 24 0 chr12 113214171 113214589 -31067900 - MSTA LTR MaLR 0 428 1 327 294 183 35 chr12 113214864 113215195 -31067294 + L2 LINE L2 2603 2883 -430 2704 170 37 42 chr12 113215195 113215336 -31067153 - MLT2B2 LTR ERVL 0 515 375 2521 70 0 7 chr12 113215336 113215637 -31066852 + AluY SINE Alu 3 301 -10 2704 170 37 42 chr12 113215637 113216013 -31066476 - MLT2B2 LTR ERVL -140 375 1 327 294 183 35 chr12 113216013 113216259 -31066230 + L2 LINE L2 2883 3263 -50 216 0 0 0 chr12 113216269 113216293 -31066196 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 297 0 0 0 chr12 113216292 113216325 -31066164 + (TA)n Simple_repeat Simple_repeat 1 33 0 238 278 31 0 chr12 113216342 113216439 -31066050 + (CATATA)n Simple_repeat Simple_repeat 3 102 0 1725 156 42 68 chr12 113216447 113216832 -31065657 - THE1C LTR MaLR 0 375 1 9988 117 59 7 chr12 113216832 113218334 -31064155 - THE1C-int LTR MaLR 0 1580 1 1663 141 61 72 chr12 113218334 113218696 -31063793 - THE1C LTR MaLR 0 375 18 220 211 19 0 chr12 113218958 113219010 -31063479 + L2 LINE L2 3257 3309 -4 2336 102 0 0 chr12 113219510 113219804 -31062685 + AluSc SINE Alu 1 294 -15 207 0 0 0 chr12 113219807 113219830 -31062659 + (CAA)n Simple_repeat Simple_repeat 2 24 0 191 276 0 53 chr12 113219927 113220003 -31062486 - MIR3 SINE MIR -135 73 2 543 249 90 51 chr12 113220292 113220469 -31062020 - MLT1K LTR MaLR -90 498 315 292 103 0 0 chr12 113222040 113222079 -31060410 - MLT2B2 LTR ERVL 0 515 477 1510 208 0 17 chr12 113222464 113222762 -31059727 + AluJo SINE Alu 1 293 -19 43959 47 5 3 chr12 113223204 113229346 -31053143 - L1PA4 LINE L1 0 6155 4 1775 162 25 164 chr12 113229357 113229881 -31052608 - MLT2B2 LTR ERVL -64 451 1 213 39 0 0 chr12 113229914 113229940 -31052549 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 205 304 14 0 chr12 113230521 113230590 -31051899 + GA-rich Low_complexity Low_complexity 4 73 0 196 283 0 0 chr12 113231528 113231581 -31050908 - MIR SINE MIR -13 249 197 191 342 63 19 chr12 113231696 113231854 -31050635 - MIR SINE MIR -78 184 20 439 297 31 47 chr12 113232008 113232205 -31050284 - MER20B DNA MER1_type -4 215 19 225 0 0 0 chr12 113232559 113232584 -31049905 + (GGGA)n Simple_repeat Simple_repeat 3 27 0 203 213 43 0 chr12 113232934 113232981 -31049508 - L2 LINE L2 -3 3310 3262 499 257 142 20 chr12 113233082 113233289 -31049200 - MIR SINE MIR -14 248 25 203 267 0 0 chr12 113233765 113233810 -31048679 - L2 LINE L2 -6 3307 3263 996 253 46 43 chr12 113234626 113234994 -31047495 - L1ME3A LINE L1 -5 6165 5797 181 206 0 0 chr12 113235008 113235042 -31047447 + MIR SINE MIR 224 257 -5 1190 284 19 19 chr12 113235124 113235497 -31046992 - L1ME3A LINE L1 -381 5789 5417 * 2592 226 92 96 chr12 113235493 113236095 -31046394 - L1MD3 LINE L1 -2 7993 7390 304 234 11 85 chr12 113236095 113236189 -31046300 - MLT1F1 LTR MaLR -446 121 35 2592 226 92 96 chr12 113236189 113236583 -31045906 - L1MD3 LINE L1 -605 7390 6697 661 221 105 53 chr12 113236569 113237014 -31045475 - L1M3 LINE L1 -732 5448 4959 * 307 246 0 0 chr12 113237026 113237087 -31045402 + G-rich Low_complexity Low_complexity 1 61 0 223 239 8 43 chr12 113237104 113237221 -31045268 + C-rich Low_complexity Low_complexity 5 117 0 1291 246 102 10 chr12 113237578 113238038 -31044451 - L1ME3A LINE L1 -92 6078 5574 634 232 19 36 chr12 113239203 113239401 -31043088 - L1ME1 LINE L1 0 6178 5979 267 200 0 0 chr12 113239888 113239943 -31042546 + MER4-int LTR ERV1 1108 1162 -5436 237 250 0 0 chr12 113239945 113240021 -31042468 + (TG)n Simple_repeat Simple_repeat 2 77 0 282 277 129 0 chr12 113240694 113240795 -31041694 - L2 LINE L2 -18 3295 3182 1109 258 63 77 chr12 113240886 113241328 -31041161 + MLT1H LTR MaLR 54 489 -60 5444 144 26 50 chr12 113241842 113242032 -31040457 - L1MA9 LINE L1 -30 6282 6089 1793 137 48 43 chr12 113242032 113242405 -31040084 + THE1C LTR MaLR 1 375 0 5444 144 26 50 chr12 113242405 113243377 -31039112 - L1MA9 LINE L1 -223 6089 5148 209 406 88 0 chr12 113243379 113243539 -31038950 - L2 LINE L2 -13 3259 3086 266 118 0 0 chr12 113244235 113244269 -31038220 - MER58A DNA MER1_type 0 224 191 * 1351 268 105 3 chr12 113244267 113244659 -31037830 - MLT1E LTR MaLR -43 550 119 27 0 0 0 chr12 113244817 113244844 -31037645 + AT_rich Low_complexity Low_complexity 1 27 0 2385 128 28 17 chr12 113245045 113245405 -31037084 - THE1B LTR MaLR 0 364 1 200 243 0 0 chr12 113246285 113246322 -31036167 + L2 LINE L2 3203 3239 -33 523 260 19 19 chr12 113246431 113246585 -31035904 + MIR SINE MIR 2 155 -107 1815 152 158 9 chr12 113246604 113246940 -31035549 + MLT1F1 LTR MaLR 182 567 0 459 0 0 0 chr12 113246943 113246994 -31035495 + (TG)n Simple_repeat Simple_repeat 2 52 0 262 297 11 137 chr12 113246994 113247201 -31035288 - L2 LINE L2 -79 3193 3048 2152 123 0 3 chr12 113247201 113247493 -31034996 - AluSx SINE Alu -21 291 1 262 297 11 137 chr12 113247493 113247642 -31034847 - L2 LINE L2 -224 3048 2882 195 337 74 23 chr12 113248298 113248473 -31034016 + L2 LINE L2 2870 3053 -219 390 300 21 14 chr12 113248962 113249102 -31033387 - MER5A DNA MER1_type -2 187 47 381 316 15 7 chr12 113250506 113250642 -31031847 + LTR16B LTR ERVL 11 147 -317 2479 117 11 16 chr12 113250664 113251041 -31031448 + THE1C LTR MaLR 1 375 0 630 273 81 41 chr12 113251109 113251380 -31031109 + LTR16B LTR ERVL 183 464 0 687 314 118 27 chr12 113252022 113252786 -31029703 + L2 LINE L2 2472 3309 -4 376 320 43 26 chr12 113253105 113253336 -31029153 - MIR SINE MIR 0 262 28 235 214 0 0 chr12 113253785 113253827 -31028662 + MIR SINE MIR 48 89 -173 350 307 13 20 chr12 113254197 113254350 -31028139 - MIR SINE MIR 0 262 111 198 222 0 74 chr12 113254431 113254485 -31028004 + L2 LINE L2 3262 3311 -2 989 231 37 0 chr12 113254492 113254708 -31027781 - MER58A DNA MER1_type 0 224 1 271 215 19 4 chr12 113254746 113254857 -31027632 - MIR SINE MIR -12 250 92 394 303 148 0 chr12 113254953 113255108 -31027381 + MER5A DNA MER1_type 9 186 -3 207 167 0 0 chr12 113256730 113256772 -31025717 + (TAA)n Simple_repeat Simple_repeat 1 42 0 579 259 24 6 chr12 113256829 113256995 -31025494 - MIR SINE MIR -67 195 27 235 70 23 23 chr12 113257024 113257067 -31025422 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 2244 119 0 0 chr12 113257681 113257974 -31024515 - AluSx SINE Alu -12 300 8 866 235 80 111 chr12 113258954 113259414 -31023075 + LTR16A1 LTR ERVL 8 453 -4 240 188 47 31 chr12 113260272 113260336 -31022153 - LTR16A1 LTR ERVL -4 453 389 193 265 48 12 chr12 113260398 113260481 -31022008 - L2 LINE L2 -124 3189 3104 219 360 9 26 chr12 113261569 113261683 -31020806 + L2 LINE L2 2874 2985 -287 428 244 9 17 chr12 113262574 113262689 -31019800 - MIR SINE MIR -70 138 25 406 302 39 22 chr12 113263101 113263283 -31019206 - MIR SINE MIR -72 190 6 189 0 0 0 chr12 113263793 113263814 -31018675 + (T)n Simple_repeat Simple_repeat 1 21 0 1784 139 21 10 chr12 113264680 113264968 -31017521 - AluJb SINE Alu -16 296 6 234 194 0 45 chr12 113265019 113265086 -31017403 + A-rich Low_complexity Low_complexity 2 65 0 248 179 60 0 chr12 113265201 113265268 -31017221 + MIR SINE MIR 71 141 -121 215 267 178 11 chr12 113265394 113265484 -31017005 + L2 LINE L2 3205 3309 -4 233 328 177 0 chr12 113266764 113266950 -31015539 - L2 LINE L2 -257 3056 2838 215 288 75 0 chr12 113267595 113267675 -31014814 - MIR SINE MIR -65 143 58 671 222 64 53 chr12 113268041 113268307 -31014182 + ORSL DNA AcHobo 5 273 -2 267 163 0 0 chr12 113268653 113268696 -31013793 - MER116 DNA Mariner 0 80 38 705 203 135 0 chr12 113268877 113269040 -31013449 - MER5A DNA MER1_type -4 185 1 1968 215 40 16 chr12 113269096 113269547 -31012942 + MLT1C LTR MaLR 1 462 -5 305 188 0 7 chr12 113269575 113269687 -31012802 - MER66B LTR ERV1 -1 477 298 2103 125 0 7 chr12 113269710 113269999 -31012490 + AluSx SINE Alu 1 287 -25 388 253 22 0 chr12 113270063 113270154 -31012335 - MER66A LTR ERV1 -217 261 169 256 289 10 39 chr12 113270131 113270235 -31012254 - MER41A LTR ERV1 -253 301 201 * 198 0 0 0 chr12 113270241 113270263 -31012226 + (T)n Simple_repeat Simple_repeat 1 22 0 219 286 44 44 chr12 113270544 113270635 -31011854 + MER5A DNA MER1_type 69 159 -30 217 333 38 19 chr12 113270545 113270650 -31011839 - MER5B DNA MER1_type -58 120 14 * 908 176 0 18 chr12 113271079 113271244 -31011245 + Ricksha DNA DNA 122 283 -2963 8119 152 10 26 chr12 113271275 113272744 -31009745 + Ricksha DNA DNA 1845 3254 -13 707 225 21 52 chr12 113274146 113274337 -31008152 + MIR SINE MIR 12 196 -66 2071 136 3 10 chr12 113274838 113275146 -31007343 + AluSx SINE Alu 1 306 -6 1545 171 65 10 chr12 113275794 113276087 -31006402 - AluJb SINE Alu -3 309 1 182 274 32 84 chr12 113276195 113276290 -31006199 + MIR SINE MIR 102 191 -71 246 286 22 44 chr12 113276490 113276581 -31005908 - MIR SINE MIR -103 105 17 444 268 22 14 chr12 113276775 113276913 -31005576 - MIR SINE MIR -77 185 47 739 281 201 37 chr12 113276913 113277376 -31005113 - LTR67 LTR ERVL 0 557 19 256 303 172 0 chr12 113277641 113277740 -31004749 + L2 LINE L2 3153 3268 -4 755 258 47 8 chr12 113277803 113278059 -31004430 - L2 LINE L2 -843 2471 2206 28 0 0 0 chr12 113278119 113278147 -31004342 + AT_rich Low_complexity Low_complexity 1 28 0 354 307 29 14 chr12 113278771 113278911 -31003578 + MIR SINE MIR 16 157 -105 378 308 21 14 chr12 113279089 113279232 -31003257 + MIR SINE MIR 14 157 -105 395 302 95 30 chr12 113279306 113279538 -31002951 - L2 LINE L2 -544 2770 2524 22 56 0 0 chr12 113279555 113279591 -31002898 + AT_rich Low_complexity Low_complexity 1 36 0 463 224 201 50 chr12 113279697 113279736 -31002753 - MIR SINE MIR -21 241 209 2077 183 85 65 chr12 113279736 113279774 -31002715 - MLT2B1 LTR ERVL -2 518 482 254 0 0 77 chr12 113279774 113279813 -31002676 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 2077 183 85 65 chr12 113279813 113280282 -31002207 - MLT2B1 LTR ERVL -38 482 1 463 224 201 50 chr12 113280282 113280421 -31002068 - MIR SINE MIR -53 209 36 286 311 44 0 chr12 113281100 113281190 -31001299 - L2 LINE L2 -20 3252 3159 953 213 27 0 chr12 113281190 113281378 -31001111 + MER3 DNA MER1_type 15 207 -2 325 203 31 0 chr12 113281326 113281390 -31001099 - MER3 DNA MER1_type -106 103 38 * 363 317 87 28 chr12 113282152 113282610 -30999879 - L1MC/D LINE L1 -2057 5751 5267 2110 102 35 0 chr12 113282628 113282913 -30999576 - AluSq SINE Alu -18 295 1 212 256 58 12 chr12 113283489 113283575 -30998914 + MIR SINE MIR 30 119 -89 242 345 23 0 chr12 113283878 113283965 -30998524 + L2 LINE L2 370 458 -2856 453 265 107 92 chr12 113284407 113284829 -30997660 + MLT1J LTR MaLR 2 429 -82 455 271 98 89 chr12 113285086 113285514 -30996975 + MLT1J LTR MaLR 2 433 -78 297 0 0 0 chr12 113285755 113285788 -30996701 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2868 236 79 33 chr12 113286167 113287242 -30995247 + L1ME2 LINE L1 4922 6062 -102 2170 124 62 8 chr12 113287242 113287598 -30994891 - THE1C LTR MaLR 0 375 1 2868 236 79 33 chr12 113287598 113287696 -30994793 + L1ME2 LINE L1 6062 6154 -10 810 196 26 15 chr12 113288151 113288380 -30994109 - MSTC LTR MaLR -161 235 1 559 321 16 94 chr12 113288381 113288578 -30993911 + MLT1K LTR MaLR 49 203 -385 2105 147 3 0 chr12 113288578 113288885 -30993604 - AluSx SINE Alu -4 308 1 559 321 16 94 chr12 113288885 113289070 -30993419 + MLT1K LTR MaLR 203 401 -187 804 177 0 0 chr12 113289156 113289286 -30993203 + MSTC LTR MaLR 1 130 -298 231 190 101 25 chr12 113289302 113289381 -30993108 + MLT1K LTR MaLR 496 580 -8 406 311 49 12 chr12 113289452 113289616 -30992873 - MIR SINE MIR -73 189 20 497 260 116 58 chr12 113290761 113291003 -30991486 + MIR SINE MIR 5 260 -2 350 288 112 0 chr12 113291536 113291661 -30990828 + MER5A DNA MER1_type 1 139 -50 1926 112 33 36 chr12 113291664 113291967 -30990522 + AluSx SINE Alu 3 304 -8 355 306 72 6 chr12 113293236 113293416 -30989073 + MLT1L LTR MaLR 414 605 -10 2044 170 8 8 chr12 113295153 113295506 -30986983 + THE1A LTR MaLR 1 353 -2 251 210 32 16 chr12 113295668 113295730 -30986759 + MIR SINE MIR 92 154 -108 1544 197 21 24 chr12 113295761 113296051 -30986438 + AluJb SINE Alu 1 289 -23 185 256 100 22 chr12 113296168 113296258 -30986231 - MIR SINE MIR -80 128 32 206 295 0 16 chr12 113297033 113297094 -30985395 + GA-rich Low_complexity Low_complexity 5 64 0 226 344 0 11 chr12 113297539 113297629 -30984860 + (CA)n Simple_repeat Simple_repeat 2 90 0 300 297 100 71 chr12 113297808 113298139 -30984350 + L1ME4a LINE L1 5596 5945 -176 2273 122 0 3 chr12 113298139 113298450 -30984039 - AluSg SINE Alu 0 310 1 300 297 100 71 chr12 113298450 113298569 -30983920 + L1ME4a LINE L1 5945 6059 -62 198 333 12 0 chr12 113299185 113299266 -30983223 + L3b LINE CR1 1166 1247 -336 735 135 0 0 chr12 113299463 113299567 -30982922 - THE1C LTR MaLR -271 104 1 378 190 20 50 chr12 113299567 113299667 -30982822 + L1MB3 LINE L1 5925 6021 -162 195 289 66 0 chr12 113300471 113300547 -30981942 - L2 LINE L2 -4 3268 3188 395 280 29 40 chr12 113300703 113300878 -30981611 + MER5A DNA MER1_type 2 174 -15 28 0 0 0 chr12 113300951 113300979 -30981510 + AT_rich Low_complexity Low_complexity 1 28 0 1899 151 20 0 chr12 113301028 113301320 -30981169 + AluSx SINE Alu 1 298 -14 281 308 22 0 chr12 113301362 113301453 -30981036 + MARNA DNA Mariner 315 407 -179 220 344 125 30 chr12 113301494 113301823 -30980666 + L2 LINE L2 2913 3272 0 2108 125 25 47 chr12 113302308 113302669 -30979820 - MLT1A1 LTR MaLR 0 365 13 256 253 55 152 chr12 113302696 113302839 -30979650 + MLT1J LTR MaLR 290 403 -108 1825 157 17 27 chr12 113302839 113303133 -30979356 - AluJo SINE Alu -21 291 1 256 253 55 152 chr12 113303133 113303226 -30979263 + MLT1J LTR MaLR 403 503 -8 318 277 30 10 chr12 113303232 113303333 -30979156 - MIR SINE MIR -49 213 111 286 274 0 0 chr12 113304918 113304991 -30977498 + L2 LINE L2 3227 3299 -14 195 277 69 15 chr12 113305245 113305375 -30977114 + MIR SINE MIR 53 189 -73 1804 280 57 40 chr12 113305446 113306530 -30975959 - L1ME LINE L1 -4501 1579 500 920 254 89 58 chr12 113306587 113306980 -30975509 + MLT1J1 LTR MaLR 42 446 0 491 318 71 20 chr12 113307118 113307414 -30975075 - L2 LINE L2 -1151 2163 1853 24601 43 44 2 chr12 113307533 113310590 -30971899 + L1P LINE L1 1 3184 -2962 293 324 52 12 chr12 113311064 113311237 -30971252 + MIR SINE MIR 13 192 -70 458 329 25 0 chr12 113311325 113311486 -30971003 + MIR SINE MIR 36 200 -62 2785 119 11 31 chr12 113311681 113312068 -30970421 + MLT2A1 LTR ERVL 1 379 -65 2487 51 14 0 chr12 113312068 113312361 -30970128 + AluY SINE Alu 1 297 -14 2785 119 11 31 chr12 113312361 113312426 -30970063 + MLT2A1 LTR ERVL 379 444 0 11225 69 2 1 chr12 113312427 113313823 -30968666 + HERVL-A1 LTR ERVL 2 1399 -4255 618 272 39 31 chr12 113314073 113314327 -30968162 - MLT1C LTR MaLR -211 256 1 253 265 136 34 chr12 113314327 113314474 -30968015 + ERVL LTR ERVL 1886 2047 -2949 * 2332 335 35 32 chr12 113314465 113315471 -30967018 + ERVL LTR ERVL 2753 3765 -1999 3186 125 82 0 chr12 113315471 113315958 -30966531 - MER1A DNA MER1_type 0 527 1 2332 335 35 32 chr12 113315958 113316289 -30966200 + ERVL LTR ERVL 3765 4094 -1670 348 341 62 34 chr12 113316293 113316562 -30965927 + ERVL LTR ERVL 4245 4565 -1095 666 274 90 45 chr12 113316814 113317102 -30965387 + LTR67 LTR ERVL 4 304 -253 20904 65 3 0 chr12 113317450 113319988 -30962501 - HERVL LTR ERVL -1029 4625 2082 1738 183 11 23 chr12 113320144 113320494 -30961995 - L1 LINE L1 -2134 4012 3667 1871 166 3 10 chr12 113320633 113320941 -30961548 + AluJo SINE Alu 1 306 -6 237 267 47 12 chr12 113321425 113321534 -30960955 + (TATATG)n Simple_repeat Simple_repeat 1 112 0 400 258 81 0 chr12 113321719 113321843 -30960646 - MER117 DNA MER1_type -28 169 36 633 194 165 95 chr12 113322282 113322524 -30959965 - MLT1E1 LTR MaLR -395 259 1 475 294 27 96 chr12 113322564 113323043 -30959446 + L2 LINE L2 2827 3272 0 306 0 0 0 chr12 113325726 113325760 -30956729 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7670 21 0 1 chr12 113325760 113326628 -30955861 - L1PA2 LINE L1 -18 6137 5271 13525 138 9 11 chr12 113326763 113329045 -30953444 + L1P LINE L1 2942 5218 -928 362 228 0 28 chr12 113329186 113329366 -30953123 + G-rich Low_complexity Low_complexity 1 175 0 304 52 35 52 chr12 113329644 113329702 -30952787 + L1MB3 LINE L1 6125 6181 -2 398 278 161 11 chr12 113329766 113330061 -30952428 - L2 LINE L2 -246 3067 2711 348 233 95 43 chr12 113330172 113330288 -30952201 - MIR SINE MIR -128 134 13 22 0 0 0 chr12 113330290 113330312 -30952177 + AT_rich Low_complexity Low_complexity 1 22 0 1732 144 70 67 chr12 113330343 113330717 -30951772 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr12 113331415 113331436 -30951053 + AT_rich Low_complexity Low_complexity 1 21 0 650 219 0 0 chr12 113331561 113331689 -30950800 + FLAM_C SINE Alu 7 134 -9 592 299 5 11 chr12 113331739 113331926 -30950563 - MIR3 SINE MIR -4 204 19 1044 111 68 12 chr12 113332177 113332339 -30950150 + THE1B LTR MaLR 194 364 0 456 238 9 0 chr12 113332449 113332554 -30949935 - MIR SINE MIR -34 228 123 351 80 0 0 chr12 113332554 113332604 -30949885 - MLT2A2 LTR ERVL 0 453 404 3122 98 20 14 chr12 113332604 113333045 -30949444 - MLT2A1 LTR ERVL 0 444 1 8214 65 9 4 chr12 113333045 113334059 -30948430 - HERVL-A1 LTR ERVL 0 5654 4636 230 176 155 0 chr12 113334195 113334261 -30948228 - MIR SINE MIR -65 143 73 311 273 79 14 chr12 113334448 113334587 -30947902 + MIR SINE MIR 22 169 -93 2074 83 23 0 chr12 113334790 113335056 -30947433 + MLT2A2 LTR ERVL 1 272 -181 183 357 32 8 chr12 113335465 113335591 -30946898 - L2 LINE L2 0 3313 3185 392 315 0 39 chr12 113335672 113335850 -30946639 + CT-rich Low_complexity Low_complexity 1 171 0 5339 123 13 10 chr12 113337232 113338064 -30944425 + L1PA15 LINE L1 5331 6165 0 585 305 24 32 chr12 113338390 113338636 -30943853 - MLT1K LTR MaLR -3 585 342 228 281 0 0 chr12 113339099 113339156 -30943333 + L2 LINE L2 3257 3313 0 222 0 25 50 chr12 113339226 113339266 -30943223 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2130 121 0 0 chr12 113339270 113339550 -30942939 - AluSg SINE Alu -30 280 1 236 318 18 18 chr12 113339735 113339845 -30942644 - L2 LINE L2 -24 3248 3139 252 0 0 0 chr12 113340455 113340483 -30942006 + (TG)n Simple_repeat Simple_repeat 1 28 0 217 225 72 45 chr12 113340683 113340794 -30941695 - L2 LINE L2 -1597 1717 1604 849 286 38 17 chr12 113340922 113341209 -30941280 + L2 LINE L2 2840 3132 -181 1302 228 80 0 chr12 113341226 113341538 -30940951 - MER2 DNA MER2_type -8 337 1 390 256 0 0 chr12 113341604 113341686 -30940803 + L2 LINE L2 3191 3272 -41 276 300 10 10 chr12 113341695 113341795 -30940694 - MIR SINE MIR -140 122 23 794 170 7 0 chr12 113342069 113342222 -30940267 - L1 LINE L1 -1497 4649 4496 195 240 308 0 chr12 113342538 113342642 -30939847 + MIR SINE MIR 4 139 -123 139 78 0 0 chr12 113344079 113344362 -30938127 + GC_rich Low_complexity Low_complexity 1 283 0 3493 149 34 0 chr12 113345679 113346289 -30936200 + L1 LINE L1 4211 4841 -1305 264 30 0 0 chr12 113346537 113346570 -30935919 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 246 291 25 0 chr12 113346658 113346737 -30935752 - HsTC2 DNA Tc2 -1064 834 754 1798 261 95 39 chr12 113346817 113347627 -30934862 + L1M4 LINE L1 3426 4318 -1828 1940 119 53 0 chr12 113347627 113347912 -30934577 + AluSq SINE Alu 2 301 -12 1798 261 95 39 chr12 113347912 113348225 -30934264 + L1M4 LINE L1 4318 4612 -1534 2461 134 84 36 chr12 113348772 113349250 -30933239 - L1PBa LINE L1 -5727 1136 636 1146 153 10 0 chr12 113349252 113349448 -30933041 - L1PBa LINE L1 -6663 200 3 658 301 40 35 chr12 113349496 113349895 -30932594 + L1M4 LINE L1 3770 4170 -1976 866 235 80 111 chr12 113350995 113351455 -30931034 + LTR16A1 LTR ERVL 8 453 -4 13518 86 28 1 chr12 113351997 113353763 -30928726 - HERVL LTR ERVL -2180 3474 1660 1214 204 7 36 chr12 113354616 113354806 -30927683 - L1MA9 LINE L1 -30 6282 6101 1998 133 49 27 chr12 113354806 113355173 -30927316 + THE1C LTR MaLR 1 375 0 1214 204 7 36 chr12 113355173 113355261 -30927228 - L1MA9 LINE L1 -211 6101 6012 5985 151 20 2 chr12 113355385 113355721 -30926768 - L1PB1 LINE L1 -21 6130 5802 930 103 0 0 chr12 113355721 113355866 -30926623 + (TA)n Simple_repeat Simple_repeat 1 145 0 5985 151 20 2 chr12 113355866 113356849 -30925640 - L1PB1 LINE L1 -349 5802 4790 255 188 43 29 chr12 113358283 113358352 -30924137 + L1MC/D LINE L1 5511 5580 -2415 1815 214 85 10 chr12 113358494 113358892 -30923597 + MLT1C LTR MaLR 40 467 0 541 250 77 0 chr12 113358897 113359053 -30923436 - HERV16 LTR ERVL -3111 1885 1718 787 281 59 59 chr12 113359055 113359511 -30922978 - HERV16 LTR ERVL -4207 789 334 2973 193 64 92 chr12 113360035 113361249 -30921240 + L1MDa LINE L1 1468 2647 -3893 276 322 3 39 chr12 113361553 113361789 -30920700 + GA-rich Low_complexity Low_complexity 1 227 0 271 306 8 24 chr12 113361755 113361879 -30920610 + A-rich Low_complexity Low_complexity 5 126 0 * 22 56 0 0 chr12 113362166 113362202 -30920287 + AT_rich Low_complexity Low_complexity 1 36 0 306 221 134 71 chr12 113362308 113362347 -30920142 - MIR SINE MIR -21 241 206 2077 183 85 65 chr12 113362347 113362385 -30920104 - MLT2B1 LTR ERVL -2 518 482 254 0 0 77 chr12 113362385 113362424 -30920065 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 2077 183 85 65 chr12 113362424 113362893 -30919596 - MLT2B1 LTR ERVL -38 482 1 306 221 134 71 chr12 113362893 113362980 -30919509 - MIR SINE MIR -56 206 107 226 330 0 40 chr12 113363011 113363187 -30919302 + CT-rich Low_complexity Low_complexity 2 170 0 467 125 0 0 chr12 113363563 113363627 -30918862 + MSTD LTR MaLR 333 396 0 215 238 0 95 chr12 113364021 113364084 -30918405 - L2 LINE L2 -15 3298 3242 233 306 112 29 chr12 113364911 113365081 -30917408 + LTR16A LTR ERVL 259 442 -8 687 282 22 6 chr12 113365088 113365269 -30917220 + HERV16 LTR ERVL 1 184 -4812 535 233 43 6 chr12 113365866 113366029 -30916460 - MER117 DNA MER1_type -26 171 3 198 143 0 0 chr12 113366655 113366690 -30915799 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 399 200 53 0 chr12 113366749 113366844 -30915645 + MER94 DNA DNA 1 100 -34 513 77 47 47 chr12 113367454 113367624 -30914865 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 286 182 0 0 chr12 113367627 113367682 -30914807 + MLT2A2 LTR ERVL 399 453 0 2103 84 51 3 chr12 113367682 113367978 -30914511 + HERVL-A2 LTR ERVL 1 310 -5344 26 0 0 0 chr12 113368225 113368251 -30914238 + GC_rich Low_complexity Low_complexity 1 26 0 207 290 0 0 chr12 113368493 113368555 -30913934 + T-rich Low_complexity Low_complexity 1 62 0 1304 165 84 61 chr12 113368816 113369201 -30913288 + THE1C LTR MaLR 6 375 0 9988 117 59 7 chr12 113369201 113370703 -30911786 + THE1C-int LTR MaLR 1 1580 0 1725 156 42 68 chr12 113370703 113371088 -30911401 + THE1C LTR MaLR 1 375 0 238 278 31 0 chr12 113371096 113371193 -30911296 + (TATATG)n Simple_repeat Simple_repeat 3 102 0 333 0 0 0 chr12 113371210 113371247 -30911242 + (TA)n Simple_repeat Simple_repeat 1 37 0 198 0 0 0 chr12 113371246 113371268 -30911221 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 234 300 127 32 chr12 113371278 113371498 -30910991 - L2 LINE L2 -50 3263 3023 2324 190 0 0 chr12 113371524 113371898 -30910591 + MLT2B3 LTR ERVL 1 374 -180 2456 66 3 13 chr12 113371900 113372204 -30910285 - AluY SINE Alu -10 301 1 272 255 43 50 chr12 113372393 113372534 -30909955 + L1MC4a LINE L1 5835 5974 -1834 198 0 0 0 chr12 113374021 113374043 -30908446 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 256 273 44 98 chr12 113375533 113375768 -30906721 - MLT1L LTR MaLR -225 390 104 496 269 26 46 chr12 113375937 113376131 -30906358 + MIR SINE MIR 55 244 -18 432 296 6 44 chr12 113376376 113376535 -30905954 - L2 LINE L2 0 3313 3161 318 277 30 10 chr12 113378098 113378199 -30904290 + MIR SINE MIR 111 213 -49 256 253 55 152 chr12 113378205 113378298 -30904191 - MLT1J LTR MaLR -8 503 403 1825 157 17 27 chr12 113378298 113378592 -30903897 + AluJo SINE Alu 1 291 -21 256 253 55 152 chr12 113378592 113378735 -30903754 - MLT1J LTR MaLR -108 403 290 2108 125 25 47 chr12 113378762 113379123 -30903366 + MLT1A1 LTR MaLR 13 365 0 220 344 125 30 chr12 113379608 113379937 -30902552 - L2 LINE L2 0 3272 2913 442 282 108 76 chr12 113379978 113380104 -30902385 - MARNA DNA Mariner -179 407 286 1889 125 15 85 chr12 113380104 113380433 -30902056 - AluSx SINE Alu -6 306 1 442 282 108 76 chr12 113380433 113380622 -30901867 - MARNA DNA Mariner -300 286 82 350 361 35 28 chr12 113380934 113381219 -30901270 + L2 LINE L2 2469 2755 -559 371 316 190 8 chr12 113381326 113381765 -30900724 + L2 LINE L2 2454 2978 -294 375 205 120 51 chr12 113381768 113381885 -30900604 + L2 LINE L2 3189 3313 0 546 177 10 0 chr12 113382570 113382666 -30899823 - MER94 DNA DNA -34 100 4 198 143 0 0 chr12 113382727 113382762 -30899727 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 535 233 43 6 chr12 113383391 113383554 -30898935 + MER117 DNA MER1_type 3 171 -26 2842 123 24 0 chr12 113384520 113384944 -30897545 - MER57B LTR ERV1 0 434 1 1794 146 59 24 chr12 113385156 113385444 -30897045 - AluJb SINE Alu -14 298 1 377 286 93 7 chr12 113385911 113386051 -30896438 - MIR SINE MIR -96 166 15 465 339 55 40 chr12 113386597 113386998 -30895491 + L2 LINE L2 2263 2669 -645 200 351 86 7 chr12 113387167 113387318 -30895171 + L2 LINE L2 2921 3083 -189 613 317 74 67 chr12 113387494 113388295 -30894194 - L2 LINE L2 -1 3271 2462 195 289 66 0 chr12 113388945 113389021 -30893468 - L2 LINE L2 -4 3268 3188 395 280 29 40 chr12 113389177 113389352 -30893137 + MER5A DNA MER1_type 2 174 -15 28 0 0 0 chr12 113389425 113389453 -30893036 + AT_rich Low_complexity Low_complexity 1 28 0 2101 140 3 0 chr12 113389502 113389802 -30892687 + AluSx SINE Alu 1 301 -11 260 303 18 0 chr12 113390672 113390781 -30891708 - MIR SINE MIR -72 136 26 201 39 0 0 chr12 113390913 113390939 -30891550 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 243 170 0 0 chr12 113391103 113391150 -30891339 + (TG)n Simple_repeat Simple_repeat 1 47 0 261 98 0 0 chr12 113392183 113392224 -30890265 + (CA)n Simple_repeat Simple_repeat 1 41 0 418 125 0 14 chr12 113392472 113392544 -30889945 + L1MA2 LINE L1 6062 6132 -172 3833 254 41 30 chr12 113393396 113394661 -30887828 + L1MEc LINE L1 9 1287 -5109 366 239 3 55 chr12 113394847 113394955 -30887534 - MLT1G LTR MaLR -268 327 212 233 306 112 29 chr12 113395210 113395380 -30887109 + LTR16A LTR ERVL 259 442 -8 1133 283 28 30 chr12 113395387 113396017 -30886472 + HERV16 LTR ERVL 1 666 -4330 20481 77 15 2 chr12 113396210 113399329 -30883160 + HERVL-A1 LTR ERVL 2455 5654 0 3147 77 45 7 chr12 113399329 113399756 -30882733 + MLT2A1 LTR ERVL 1 443 -1 267 258 159 26 chr12 113399865 113400016 -30882473 + MIR SINE MIR 92 262 0 7294 208 63 60 chr12 113401000 113403726 -30878763 - L1MDa LINE L1 -966 5574 447 205 292 161 37 chr12 113404037 113404198 -30878291 + MIR SINE MIR 38 218 -44 904 334 89 11 chr12 113404268 113404738 -30877751 + MLT1J LTR MaLR 5 511 0 8042 192 17 32 chr12 113404910 113405226 -30877263 - L1PA15 LINE L1 -14 6151 5832 186 43 0 0 chr12 113405226 113405249 -30877240 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2273 82 7 0 chr12 113405249 113405529 -30876960 - AluSc SINE Alu -27 282 1 8042 192 17 32 chr12 113405529 113405566 -30876923 - L1PA15 LINE L1 -332 5833 5797 384 22 0 0 chr12 113405566 113405611 -30876878 + (TG)n Simple_repeat Simple_repeat 1 45 0 8042 192 17 32 chr12 113405611 113407722 -30874767 - L1PA15 LINE L1 -368 5797 3719 211 364 36 29 chr12 113407787 113407927 -30874562 + MER5A DNA MER1_type 46 186 -3 431 231 39 10 chr12 113408283 113408387 -30874102 - MLT1J2 LTR MaLR 0 450 344 613 281 74 29 chr12 113408611 113408774 -30873715 + HERV16 LTR ERVL 1716 1822 -3174 2167 198 83 9 chr12 113408774 113409209 -30873280 - MLT1C LTR MaLR 0 467 1 613 281 74 29 chr12 113409209 113409351 -30873138 + HERV16 LTR ERVL 1822 1956 -3040 * 2270 333 34 31 chr12 113409346 113410351 -30872138 + HERV16 LTR ERVL 2753 3764 -2000 3380 125 82 0 chr12 113410351 113410838 -30871651 - MER1A DNA MER1_type 0 527 1 2270 333 34 31 chr12 113410838 113411094 -30871395 + HERV16 LTR ERVL 3764 4018 -1746 290 271 8 39 chr12 113411887 113412016 -30870473 + HERV16 LTR ERVL 4566 4690 -306 602 235 2 0 chr12 113412016 113412135 -30870354 + MER45 DNA AcHobo 2 108 -70 1385 180 20 12 chr12 113412160 113412410 -30870079 + MLT1A1 LTR MaLR 2 253 -112 999 216 62 21 chr12 113412410 113412725 -30869764 + MSTD LTR MaLR 5 394 -2 666 162 0 34 chr12 113412726 113412843 -30869646 + MLT1A1 LTR MaLR 253 365 0 252 220 0 0 chr12 113412845 113412895 -30869594 + MER45 DNA AcHobo 1532 1581 0 230 111 0 127 chr12 113413159 113413222 -30869267 - L1MA9 LINE L1 0 6312 6258 1747 201 56 50 chr12 113413258 113413573 -30868916 - L1ME1 LINE L1 -137 6029 5718 2075 158 140 11 chr12 113413573 113413952 -30868537 - MSTA LTR MaLR 0 428 1 1747 201 56 50 chr12 113413952 113414025 -30868464 - L1ME1 LINE L1 -448 5718 5647 1673 74 0 0 chr12 113414025 113414227 -30868262 + AluY SINE Alu 83 284 -27 216 0 0 0 chr12 113414227 113414251 -30868238 + (TA)n Simple_repeat Simple_repeat 2 25 0 279 0 0 0 chr12 113414250 113414281 -30868208 + (TG)n Simple_repeat Simple_repeat 2 32 0 1747 201 56 50 chr12 113414251 113414352 -30868137 - L1ME1 LINE L1 -518 5648 5565 431 250 125 29 chr12 113414352 113414488 -30868001 - MLT1I LTR MaLR -56 353 205 2745 136 14 5 chr12 113414488 113414844 -30867645 - L1MC1 LINE L1 -386 5947 5585 2498 101 13 42 chr12 113414844 113415230 -30867259 + THE1C LTR MaLR 1 375 0 2745 136 14 5 chr12 113415230 113415306 -30867183 - L1MC1 LINE L1 -748 5585 5511 246 265 184 10 chr12 113415312 113415410 -30867079 + MIR SINE MIR 114 228 -34 371 273 36 50 chr12 113416266 113416405 -30866084 - MIR SINE MIR -78 184 48 246 275 88 22 chr12 113416498 113416589 -30865900 + L2 LINE L2 3208 3304 -9 231 213 11 53 chr12 113417731 113417825 -30864664 + T-rich Low_complexity Low_complexity 1 90 0 565 263 53 66 chr12 113418838 113418997 -30863492 - MIR SINE MIR -14 248 92 1682 202 75 49 chr12 113418997 113419383 -30863106 - MSTD LTR MaLR 0 396 1 565 263 53 66 chr12 113419383 113419466 -30863023 - MIR SINE MIR -170 92 9 733 312 123 32 chr12 113419666 113420105 -30862384 + L2 LINE L2 2827 3305 -8 21 0 0 0 chr12 113420254 113420275 -30862214 + AT_rich Low_complexity Low_complexity 1 21 0 554 101 13 0 chr12 113420449 113420528 -30861961 + MADE1 DNA Mariner 1 80 0 2630 62 0 0 chr12 113420555 113420864 -30861625 + AluY SINE Alu 1 309 -2 242 307 50 64 chr12 113420936 113421076 -30861413 + MIR SINE MIR 10 147 -115 517 234 8 8 chr12 113421095 113421219 -30861270 - L2 LINE L2 -1 3312 3189 512 296 110 43 chr12 113421279 113421624 -30860865 + MLT1L LTR MaLR 5 372 -243 187 152 0 0 chr12 113422183 113422216 -30860273 - MER5A DNA MER1_type -76 113 81 306 0 0 0 chr12 113422642 113422676 -30859813 + (TTA)n Simple_repeat Simple_repeat 3 36 0 6308 9 0 0 chr12 113422676 113423336 -30859153 - L1PA3 LINE L1 -18 6137 5478 1801 27 5 0 chr12 113423348 113423571 -30858918 + L1PA3 LINE L1 5255 5478 -677 198 143 0 0 chr12 113423695 113423730 -30858759 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 223 397 0 0 chr12 113423749 113423827 -30858662 - L2 LINE L2 -51 3262 3185 415 231 164 30 chr12 113423940 113424074 -30858415 - MIR SINE MIR -103 159 8 424 226 66 0 chr12 113425135 113425241 -30857248 - MIR SINE MIR -71 191 79 302 235 32 60 chr12 113425604 113425748 -30856741 - MIR3 SINE MIR -5 203 67 232 269 28 71 chr12 113426042 113426183 -30856306 - MIR SINE MIR -78 184 50 2736 98 19 6 chr12 113427515 113427874 -30854615 - THE1B LTR MaLR 0 364 1 634 215 40 45 chr12 113428016 113428193 -30854296 + MIR SINE MIR 31 206 -56 180 194 0 0 chr12 113428513 113428544 -30853945 - L2 LINE L2 -11 3302 3272 218 268 0 18 chr12 113428573 113428629 -30853860 + MIR SINE MIR 159 213 -49 214 222 250 0 chr12 113429030 113429138 -30853351 - L2 LINE L2 -206 3066 2932 597 311 49 22 chr12 113429219 113429541 -30852948 + L2 LINE L2 2779 3107 -206 618 270 33 47 chr12 113429550 113429761 -30852728 + MLT1I LTR MaLR 202 409 0 248 188 0 47 chr12 113431694 113431758 -30850731 + MER116 DNA Mariner 19 79 -1 2439 74 0 10 chr12 113432058 113432369 -30850120 - AluY SINE Alu -3 308 1 971 154 0 26 chr12 113432394 113432550 -30849939 - FRAM SINE Alu -24 152 1 942 223 36 0 chr12 113432551 113432771 -30849718 - L1MD3 LINE L1 -4 7991 7764 1284 255 106 40 chr12 113432785 113433331 -30849158 + MLT1G LTR MaLR 1 582 -8 384 304 189 50 chr12 113433415 113433675 -30848814 - L2 LINE L2 -5 3267 2972 231 247 13 13 chr12 113434372 113434449 -30848040 + MLT1K LTR MaLR 509 585 -3 381 319 41 8 chr12 113434495 113434615 -30847874 - MIR SINE MIR -85 123 4 328 304 58 14 chr12 113434847 113434985 -30847504 - MIR SINE MIR -98 164 21 317 253 33 11 chr12 113435042 113435133 -30847356 - MIR SINE MIR -5 257 165 222 320 41 33 chr12 113435933 113436055 -30846434 - MIR SINE MIR -15 247 125 319 223 81 74 chr12 113436137 113436285 -30846204 - MIR SINE MIR -12 250 102 323 267 244 15 chr12 113436711 113436842 -30845647 - MIR SINE MIR -74 188 28 383 260 34 94 chr12 113437029 113437264 -30845225 + MLT1J LTR MaLR 98 318 -193 199 266 195 39 chr12 113437918 113438072 -30844417 - MIR SINE MIR -57 205 28 247 276 48 76 chr12 113438160 113438265 -30844224 + L3 LINE CR1 1263 1364 -213 378 0 0 0 chr12 113440508 113440550 -30841939 + (CA)n Simple_repeat Simple_repeat 2 43 0 1878 155 41 33 chr12 113441678 113442040 -30840449 + MLT1A1 LTR MaLR 1 365 0 2052 111 45 24 chr12 113442130 113442463 -30840026 + L1MA3 LINE L1 5965 6304 -1 194 290 43 0 chr12 113442505 113442574 -30839915 + MIR3 SINE MIR 134 205 -3 304 303 112 30 chr12 113443021 113443351 -30839138 - L1MC4 LINE L1 -126 7916 7560 * 43757 31 23 4 chr12 113443346 113449405 -30833084 - L1PA3 LINE L1 0 6155 1 363 230 40 10 chr12 113449405 113449505 -30832984 + MER20B DNA MER1_type 55 157 -626 507 139 0 93 chr12 113449533 113449641 -30832848 - L1PA11 LINE L1 -1 6173 6076 984 237 69 99 chr12 113449853 113450275 -30832214 + MLT1I LTR MaLR 1 409 0 2082 200 5 28 chr12 113450549 113450944 -30831545 - MLT1B LTR MaLR -2 388 3 262 213 149 118 chr12 113452401 113452622 -30829867 + MLT1K LTR MaLR 300 527 -61 225 0 0 0 chr12 113452622 113452647 -30829842 + (T)n Simple_repeat Simple_repeat 1 25 0 236 186 68 34 chr12 113452721 113452780 -30829709 + MIR SINE MIR 84 144 -118 2139 128 7 0 chr12 113452859 113453155 -30829334 - AluSx SINE Alu -13 299 2 23 33 0 0 chr12 113453746 113453776 -30828713 + AT_rich Low_complexity Low_complexity 1 30 0 934 144 0 23 chr12 113453777 113453909 -30828580 - FLAM_C SINE Alu -2 131 3 1465 156 35 149 chr12 113454324 113454746 -30827743 + MLT1A2 LTR MaLR 1 374 0 190 273 20 71 chr12 113455262 113455361 -30827128 - L2 LINE L2 -1896 1418 1325 401 329 108 38 chr12 113455472 113455816 -30826673 - MLT1J2 LTR MaLR -2 448 81 853 206 65 18 chr12 113456617 113456787 -30825702 + MER45A DNA AcHobo 1 178 0 219 264 97 0 chr12 113456805 113456877 -30825612 + MIR3 SINE MIR 124 202 -6 468 259 19 74 chr12 113457284 113457477 -30825012 + MIR3 SINE MIR 10 192 -59 236 369 0 0 chr12 113457685 113457750 -30824739 - L2 LINE L2 -4 3268 3204 207 0 0 0 chr12 113457765 113457788 -30824701 + (TTAAA)n Simple_repeat Simple_repeat 5 27 0 1538 99 19 5 chr12 113457788 113457994 -30824495 - L1PA10 LINE L1 -19 6149 5941 2724 103 5 56 chr12 113457994 113458439 -30824050 + L1P LINE L1 4609 5030 -1116 213 167 28 0 chr12 113458531 113458567 -30823922 - L2 LINE L2 -10 3303 3267 249 33 0 0 chr12 113458926 113458956 -30823533 + (GA)n Simple_repeat Simple_repeat 1 30 0 379 289 10 0 chr12 113459035 113459132 -30823357 + MER91B DNA MER1_type 16 113 -77 780 130 108 13 chr12 113459132 113459332 -30823157 + LTR54B LTR ERV1 1 239 -271 623 187 8 16 chr12 113459333 113459456 -30823033 + MER57A-int LTR ERV1 7371 7492 -45 2234 170 72 0 chr12 113459464 113459840 -30822649 + MER57A LTR ERV1 1 403 0 2714 48 0 0 chr12 113461742 113462053 -30820436 - AluY SINE Alu 0 311 1 180 188 0 0 chr12 113462634 113462666 -30819823 + MIR SINE MIR 122 153 -109 3232 159 28 40 chr12 113462667 113463151 -30819338 + L1MB7 LINE L1 5535 6010 -174 1366 224 77 45 chr12 113463151 113463503 -30818986 - MLT1A1 LTR MaLR -2 363 1 3232 159 28 40 chr12 113463503 113463667 -30818822 + L1MB7 LINE L1 6010 6175 -9 271 314 128 0 chr12 113464589 113464691 -30817798 + L2 LINE L2 3158 3272 0 1575 196 76 120 chr12 113464820 113465324 -30817165 + MLT2B2 LTR ERVL 1 481 -39 543 69 0 0 chr12 113465324 113465396 -30817093 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 1575 196 76 120 chr12 113465396 113465433 -30817056 + MLT2B2 LTR ERVL 481 518 -2 411 306 97 0 chr12 113465963 113466097 -30816392 - MLT1G1 LTR MaLR -224 371 225 206 330 53 128 chr12 113466378 113466605 -30815884 - L2 LINE L2 -19 3253 3044 27 0 0 0 chr12 113467406 113467433 -30815056 + AT_rich Low_complexity Low_complexity 1 27 0 481 212 113 7 chr12 113467857 113468008 -30814481 - MARNA DNA Mariner -24 562 396 * 496 278 78 13 chr12 113467880 113468110 -30814379 + MARNA DNA Mariner 53 297 -289 652 246 8 0 chr12 113468744 113468866 -30813623 + FLAM_A SINE Alu 1 123 -19 2317 79 3 31 chr12 113468873 113469191 -30813298 + AluY SINE Alu 1 309 -2 767 214 25 45 chr12 113469347 113469548 -30812941 - MIR SINE MIR -1 261 65 2692 167 18 8 chr12 113469846 113470338 -30812151 - L1MC1 LINE L1 0 7764 6151 1920 181 148 51 chr12 113470338 113470946 -30811543 + LTR1B LTR ERV1 1 707 -119 795 105 0 0 chr12 113471055 113471179 -30811310 + (TA)n Simple_repeat Simple_repeat 2 125 0 11376 185 11 10 chr12 113471179 113474113 -30808376 - L1P5 LINE L1 -371 6496 3565 3732 228 145 80 chr12 113474115 113475171 -30807318 - L1P5 LINE L1 -5103 1760 636 1076 152 10 10 chr12 113475173 113475371 -30807118 - L1P5 LINE L1 -6663 200 3 901 275 132 35 chr12 113475474 113477019 -30805470 + L1ME4a LINE L1 3820 5694 -468 2356 150 31 75 chr12 113477130 113477582 -30804907 - MSTB1 LTR MaLR 0 432 1 572 269 132 79 chr12 113477602 113478111 -30804378 + L1MC4 LINE L1 7492 8027 -15 351 260 125 0 chr12 113478690 113478786 -30803703 + MIR SINE MIR 83 190 -72 421 325 0 8 chr12 113479042 113479168 -30803321 + MER5A DNA MER1_type 21 145 -44 359 264 104 9 chr12 113479168 113479274 -30803215 + L2 LINE L2 3156 3271 -1 602 217 147 13 chr12 113479531 113479688 -30802801 + MER5B DNA MER1_type 1 178 0 571 265 127 5 chr12 113480015 113480204 -30802285 - MIR SINE MIR -30 232 21 221 303 110 9 chr12 113480530 113480639 -30801850 - L2 LINE L2 -382 2931 2812 23 33 0 0 chr12 113480779 113480809 -30801680 + AT_rich Low_complexity Low_complexity 1 30 0 433 357 6 11 chr12 113481304 113481486 -30801003 - MER5A DNA MER1_type -8 181 1 843 157 7 26 chr12 113482068 113482221 -30800268 + FRAM SINE Alu 23 172 -4 284 219 73 92 chr12 113482237 113482401 -30800088 + L1ME4a LINE L1 5738 5898 -223 1280 296 38 20 chr12 113482408 113482857 -30799632 - L2 LINE L2 0 3313 2857 437 220 0 0 chr12 113484212 113484303 -30798186 + MER103 DNA DNA 1 91 -75 224 235 0 0 chr12 113484779 113484830 -30797659 + (CA)n Simple_repeat Simple_repeat 2 52 0 670 286 27 18 chr12 113485345 113485565 -30796924 - MIR SINE MIR -34 228 7 234 222 74 0 chr12 113485622 113485676 -30796813 + L2 LINE L2 2638 2695 -619 1030 278 33 36 chr12 113485746 113486138 -30796351 - MLT1J LTR MaLR -116 395 5 808 257 101 34 chr12 113486139 113486627 -30795862 + L2 LINE L2 2688 3313 0 252 307 55 54 chr12 113488101 113488268 -30794221 - MIR SINE MIR -65 143 19 193 317 56 56 chr12 113488263 113488424 -30794065 - L2 LINE L2 -1 3312 3152 * 240 275 50 50 chr12 113489326 113489446 -30793043 + LTR67 LTR ERVL 427 546 -11 505 223 0 0 chr12 113490332 113490426 -30792063 - MLT2E LTR ERVL -469 159 66 24 53 0 0 chr12 113490782 113490820 -30791669 + AT_rich Low_complexity Low_complexity 1 38 0 268 101 101 0 chr12 113490820 113490958 -30791531 + (TA)n Simple_repeat Simple_repeat 1 152 0 246 235 0 0 chr12 113491019 113491070 -30791419 + (CA)n Simple_repeat Simple_repeat 2 52 0 52 17 0 0 chr12 113491502 113491561 -30790928 + AT_rich Low_complexity Low_complexity 1 59 0 195 94 38 19 chr12 113491564 113491617 -30790872 + (TA)n Simple_repeat Simple_repeat 1 54 0 476 264 84 22 chr12 113491628 113491806 -30790683 - ERVL LTR ERVL -654 5110 4922 31 58 0 0 chr12 113492276 113492328 -30790161 + AT_rich Low_complexity Low_complexity 1 52 0 998 297 92 2 chr12 113492888 113493332 -30789157 + LTR16C LTR ERVL 1 484 -7 280 263 116 11 chr12 113493448 113493543 -30788946 + MIR SINE MIR 157 261 -1 292 232 30 60 chr12 113494237 113494370 -30788119 + MIR SINE MIR 92 224 -38 745 255 48 76 chr12 113494473 113494725 -30787764 + MIR SINE MIR 14 262 0 1190 259 20 23 chr12 113495005 113495306 -30787183 + LTR16C LTR ERVL 192 491 0 378 151 0 0 chr12 113496186 113496259 -30786230 + CT-rich Low_complexity Low_complexity 2 74 0 285 316 29 43 chr12 113496267 113496406 -30786083 - MIR SINE MIR -111 151 15 518 261 30 8 chr12 113496851 113496985 -30785504 + MIR3 SINE MIR 20 156 -52 859 291 80 27 chr12 113497032 113497166 -30785323 - L2 LINE L2 -1 3312 3186 1434 185 63 4 chr12 113497166 113497436 -30785053 + AluJb SINE Alu 1 286 -26 408 55 0 0 chr12 113497436 113497491 -30784998 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 859 291 80 27 chr12 113497491 113497757 -30784732 - L2 LINE L2 -126 3187 2890 2361 100 6 0 chr12 113497757 113498068 -30784421 + AluSq SINE Alu 1 313 0 310 255 128 0 chr12 113498380 113498482 -30784007 - L2 LINE L2 0 3313 3199 1400 158 18 5 chr12 113498562 113498783 -30783706 - MER58A DNA MER1_type 0 224 1 464 176 176 0 chr12 113499592 113499694 -30782795 - L2 LINE L2 0 3272 3153 291 212 61 15 chr12 113499741 113499807 -30782682 + MER91C DNA MER1_type 26 94 -46 276 167 0 0 chr12 113499808 113499850 -30782639 + 5S rRNA rRNA 1 42 -79 181 254 90 30 chr12 113499998 113500065 -30782424 - L2 LINE L2 -10 3303 3233 409 306 16 8 chr12 113500113 113500237 -30782252 - L2 LINE L2 -9 3304 3180 183 174 43 101 chr12 113500997 113501066 -30781423 + MER5B DNA MER1_type 2 66 -112 * 263 213 115 0 chr12 113501033 113501094 -30781395 - MER5A DNA MER1_type -119 70 3 283 352 74 52 chr12 113501456 113501820 -30780669 - L2 LINE L2 -3 3269 2898 257 241 0 0 chr12 113501907 113501961 -30780528 - LTR41 LTR ERVL -6 767 714 3445 132 49 2 chr12 113504957 113505597 -30776892 + L1MA4 LINE L1 5214 5884 -416 603 227 95 15 chr12 113507904 113508477 -30774012 + L1ME1 LINE L1 5049 5818 -348 1296 190 70 18 chr12 113508477 113508804 -30773685 + MER2 DNA MER2_type 1 344 0 603 227 95 15 chr12 113508804 113508982 -30773507 + L1ME1 LINE L1 5818 5980 -186 426 194 8 39 chr12 113509047 113509176 -30773313 + L1MA9 LINE L1 6177 6301 -11 2451 67 3 13 chr12 113509212 113509526 -30772963 - AluY SINE Alu 0 311 1 225 291 28 35 chr12 113509715 113509856 -30772633 + L1MC4a LINE L1 5835 5974 -1834 390 271 18 24 chr12 113510796 113510962 -30771527 + A-rich Low_complexity Low_complexity 2 166 0 228 114 0 0 chr12 113511435 113511470 -30771019 - L1MC3 LINE L1 -509 7276 7242 * 1127 225 24 7 chr12 113511466 113511764 -30770725 - L1MCb LINE L1 -4993 1052 750 687 213 12 6 chr12 113511761 113511921 -30770568 - L1MCb LINE L1 -6248 316 156 * 2494 105 8 8 chr12 113512457 113512820 -30769669 + THE1B LTR MaLR 2 364 0 1643 129 21 0 chr12 113513034 113513159 -30769330 + AluSx SINE Alu 1 122 -190 225 0 0 0 chr12 113513159 113513184 -30769305 + (CA)n Simple_repeat Simple_repeat 2 26 0 1643 129 21 0 chr12 113513184 113513299 -30769190 + AluSx SINE Alu 122 246 -66 1991 293 132 14 chr12 113513358 113514273 -30768216 + L2 LINE L2 1865 2887 -427 1304 136 41 8 chr12 113514277 113514520 -30767969 - AluSp SINE Alu -4 309 59 457 75 38 75 chr12 113514651 113514837 -30767652 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 232 167 19 0 chr12 113514840 113514894 -30767595 + MLT2A2 LTR ERVL 399 453 0 16891 79 17 19 chr12 113514894 113517318 -30765171 + HERVL-A2 LTR ERVL 1 2421 -3233 522 125 62 0 chr12 113517441 113517585 -30764904 + (TA)n Simple_repeat Simple_repeat 1 153 0 2416 96 29 5 chr12 113517592 113517966 -30764523 - MLT2A1 LTR ERVL -61 383 1 466 352 34 0 chr12 113518157 113518336 -30764153 - MIR SINE MIR -62 200 16 390 311 52 16 chr12 113518386 113518579 -30763910 - MIR SINE MIR -50 212 13 322 223 184 0 chr12 113518969 113519072 -30763417 + MIR SINE MIR 32 153 -109 274 331 31 8 chr12 113569300 113569430 -30713059 + L3 LINE CR1 1208 1340 -237 275 324 28 56 chr12 113569441 113569620 -30712869 + Charlie8 DNA MER1_type 1 174 -2243 344 274 44 44 chr12 113569852 113569987 -30712502 + Charlie8 DNA MER1_type 154 288 -2129 392 319 68 39 chr12 113570038 113570245 -30712244 + L3 LINE CR1 1340 1552 -25 388 326 94 6 chr12 113570833 113571014 -30711475 - L3b LINE CR1 -208 1375 1179 2235 115 0 0 chr12 113571722 113572026 -30710463 - AluSq SINE Alu -9 304 1 494 234 158 68 chr12 113572726 113572948 -30709541 + MLT1H LTR MaLR 67 308 -241 337 283 53 35 chr12 113573020 113573133 -30709356 + MLT1H LTR MaLR 435 549 0 232 258 62 31 chr12 113573228 113573356 -30709133 - L1ME4a LINE L1 -2 6119 5988 244 206 113 62 chr12 113573642 113573739 -30708750 + L1P5 LINE L1 5352 5453 -701 627 234 54 6 chr12 113574325 113574492 -30707997 - LTR16A1 LTR ERVL -23 434 260 199 284 69 10 chr12 113575542 113575644 -30706845 + L2 LINE L2 2800 2907 -407 466 223 102 36 chr12 113576205 113576371 -30706118 - MIR SINE MIR 0 262 86 444 322 73 19 chr12 113576982 113577219 -30705270 + MIR SINE MIR 3 252 -10 351 275 56 39 chr12 113577764 113577942 -30704547 - L1ME4a LINE L1 -4 6117 5937 366 250 160 21 chr12 113579437 113579625 -30702864 + MIR SINE MIR 49 262 0 1205 130 77 5 chr12 113581101 113581309 -30701180 - AluSc SINE Alu 0 309 87 447 340 93 7 chr12 113581390 113581607 -30700882 + MIR SINE MIR 15 246 -16 187 211 26 0 chr12 113581971 113582009 -30700480 - L2 LINE L2 -20 3293 3255 2411 171 0 47 chr12 113582340 113582785 -30699704 - MSTB LTR MaLR 0 426 3 476 294 15 40 chr12 113582842 113583043 -30699446 + MIR SINE MIR 64 259 -3 235 143 31 174 chr12 113583403 113583464 -30699025 + MER112 DNA MER1_type 1 44 -216 198 0 0 0 chr12 113583464 113583486 -30699003 + (TG)n Simple_repeat Simple_repeat 2 23 0 235 143 31 174 chr12 113583486 113583522 -30698967 + MER112 DNA MER1_type 44 84 -176 7992 36 0 0 chr12 113583546 113585234 -30697255 + L1PA4 LINE L1 4465 6153 -2 2792 49 3 6 chr12 113585393 113585718 -30696771 + L1PA6 LINE L1 5823 6146 -8 809 179 85 22 chr12 113585819 113586043 -30696446 - L1MC3 LINE L1 0 7785 7548 38 22 0 0 chr12 113586170 113586215 -30696274 + AT_rich Low_complexity Low_complexity 1 45 0 2411 130 12 3 chr12 113586312 113586657 -30695832 - L1PB4 LINE L1 -13 6143 5796 27 0 0 0 chr12 113586667 113586694 -30695795 + AT_rich Low_complexity Low_complexity 1 27 0 2450 48 0 3 chr12 113586742 113587037 -30695452 + AluY SINE Alu 1 294 -17 740 170 38 12 chr12 113587260 113587411 -30695078 - L1ME4a LINE L1 -496 5804 5652 207 258 113 0 chr12 113587411 113587473 -30695016 - MIR SINE MIR -147 115 47 1288 290 102 25 chr12 113587524 113588134 -30694355 + L1MCc LINE L1 17 673 -5750 1862 205 68 25 chr12 113588195 113588638 -30693851 - MLT1C LTR MaLR 0 467 6 1019 283 133 25 chr12 113588672 113588865 -30693624 + L1MCc LINE L1 781 952 -5471 1243 198 63 121 chr12 113588865 113589279 -30693210 + MLT1B LTR MaLR 1 390 0 1019 283 133 25 chr12 113589279 113589527 -30692962 + L1MCc LINE L1 952 1270 -5153 519 268 6 9 chr12 113590465 113590656 -30691833 + MIR SINE MIR 20 262 0 244 292 51 66 chr12 113590815 113590952 -30691537 + L2 LINE L2 3137 3271 -1 825 182 119 59 chr12 113591172 113591408 -30691081 + MIR SINE MIR 13 262 0 247 387 33 29 chr12 113591547 113591790 -30690699 + MIR SINE MIR 1 244 -18 1628 224 55 50 chr12 113593079 113593516 -30688973 - MLT1H LTR MaLR -110 439 1 398 309 68 23 chr12 113593869 113594089 -30688400 + L2 LINE L2 3043 3272 0 217 339 61 28 chr12 113594128 113594308 -30688181 - L2 LINE L2 -263 3009 2824 277 222 0 14 chr12 113594423 113594495 -30687994 + MIR SINE MIR 86 156 -106 830 245 79 28 chr12 113594498 113594569 -30687920 - MIR SINE MIR -35 227 161 207 100 0 0 chr12 113594569 113594599 -30687890 + (TTA)n Simple_repeat Simple_repeat 3 32 0 830 245 79 28 chr12 113594599 113594743 -30687746 - MIR SINE MIR -101 161 1 389 184 46 55 chr12 113594759 113594868 -30687621 + MIR SINE MIR 155 262 0 797 178 0 0 chr12 113595167 113595313 -30687176 - MLT1B-int LTR MaLR -1224 147 2 2125 155 16 39 chr12 113595313 113595694 -30686795 - MLT1B LTR MaLR -18 372 1 2082 135 7 0 chr12 113595730 113596018 -30686471 + AluSx SINE Alu 1 290 -22 369 0 0 0 chr12 113596033 113596074 -30686415 + (GA)n Simple_repeat Simple_repeat 2 42 0 334 339 40 8 chr12 113596958 113597082 -30685407 + MIR SINE MIR 16 143 -65 212 294 152 22 chr12 113597157 113597249 -30685240 + MIR SINE MIR 28 131 -131 254 154 0 19 chr12 113597256 113597308 -30685181 - L2 LINE L2 0 3313 3263 239 278 63 48 chr12 113597339 113597465 -30685024 + MIR SINE MIR 125 252 -10 265 333 0 0 chr12 113597852 113597930 -30684559 + (CA)n Simple_repeat Simple_repeat 2 79 0 598 189 81 14 chr12 113598115 113598263 -30684226 - MER103 DNA DNA -1 165 8 271 292 39 45 chr12 113598902 113599059 -30683430 - MER5A DNA MER1_type -3 175 25 258 322 42 35 chr12 113599110 113599253 -30683236 + L2 LINE L2 2926 3069 -203 958 236 100 24 chr12 113599396 113599777 -30682712 - L1ME4a LINE L1 -4 6117 5708 486 278 179 0 chr12 113599780 113599953 -30682536 + LTR33 LTR ERVL 1 204 -317 568 230 43 104 chr12 113599986 113600216 -30682273 + LTR33 LTR ERVL 304 519 -2 343 278 195 42 chr12 113600226 113600539 -30681950 - L1ME4a LINE L1 -416 5705 5345 231 321 12 0 chr12 113600783 113600867 -30681622 - MIR SINE MIR 0 262 178 244 321 67 72 chr12 113602916 113603307 -30679182 + MLT1K LTR MaLR 168 558 -30 2596 111 45 78 chr12 113603307 113603756 -30678733 + Tigger2a DNA MER2_type 1 434 0 244 321 67 72 chr12 113603756 113603769 -30678720 + MLT1K LTR MaLR 558 570 -18 602 220 67 13 chr12 113603830 113603980 -30678509 - MIR SINE MIR -34 228 71 235 335 34 67 chr12 113603978 113604187 -30678302 - L2 LINE L2 -1340 1974 1773 * 595 244 12 18 chr12 113604209 113604373 -30678116 - MLT1L LTR MaLR -4 611 449 284 257 0 62 chr12 113604375 113604547 -30677942 - L1MEd LINE L1 -4862 1257 1177 214 367 102 72 chr12 113605117 113605547 -30676942 - L2 LINE L2 -23 3249 2807 488 225 18 9 chr12 113605639 113605750 -30676739 - MER5A DNA MER1_type -77 112 1 429 319 139 47 chr12 113606655 113607128 -30675361 + L2 LINE L2 2337 2853 -461 297 290 37 26 chr12 113607322 113607572 -30674917 - L1P5 LINE L1 -693 5463 5208 212 326 38 61 chr12 113607613 113607745 -30674744 - MIR3 SINE MIR -73 135 7 425 306 8 0 chr12 113608027 113608148 -30674341 - MER117 DNA MER1_type -5 192 71 2355 118 35 32 chr12 113608308 113608682 -30673807 + THE1C LTR MaLR 1 375 0 511 317 120 61 chr12 113608861 113609653 -30672836 + L1MEc LINE L1 1149 1987 -4409 272 172 7 172 chr12 113609751 113609852 -30672637 + L1ME4a LINE L1 5991 6061 -60 2020 149 0 13 chr12 113609852 113610167 -30672322 - AluSx SINE Alu -1 311 1 272 172 7 172 chr12 113610167 113610216 -30672273 + L1ME4a LINE L1 6061 6116 -5 25 0 0 0 chr12 113610217 113610242 -30672247 + AT_rich Low_complexity Low_complexity 1 25 0 208 404 11 0 chr12 113610276 113610370 -30672119 + L3 LINE CR1 1475 1569 -8 222 308 51 13 chr12 113610690 113610768 -30671721 + MIR SINE MIR 47 127 -135 298 327 43 53 chr12 113611327 113611535 -30670954 - L3 LINE CR1 -50 1527 1322 389 294 0 24 chr12 113611537 113611663 -30670826 + MER94 DNA DNA 1 123 -11 1138 210 192 93 chr12 113611922 113612230 -30670259 - MLT1F1 LTR MaLR -1 566 290 2047 175 5 49 chr12 113612230 113612636 -30669853 - MLT1B LTR MaLR 0 390 3 1138 210 192 93 chr12 113612636 113612842 -30669647 - MLT1F1 LTR MaLR -277 290 1 24 0 0 29 chr12 113613273 113613293 -30669196 + AT_rich Low_complexity Low_complexity 1 21 -13 860 174 0 36 chr12 113613293 113613431 -30669058 + FLAM_C SINE Alu 1 133 0 24 0 0 29 chr12 113613431 113613445 -30669044 + AT_rich Low_complexity Low_complexity 21 34 0 1096 199 0 39 chr12 113613453 113613684 -30668805 + AluJo SINE Alu 87 308 -4 21 57 0 0 chr12 113614471 113614506 -30667983 + AT_rich Low_complexity Low_complexity 1 35 0 16313 122 35 8 chr12 113614544 113616899 -30665590 + Tigger1 DNA MER2_type 1 2417 -1 199 295 143 45 chr12 113617263 113617375 -30665114 + L2 LINE L2 3121 3243 -29 669 283 66 18 chr12 113617772 113617998 -30664491 + MIR SINE MIR 20 256 -6 344 275 133 0 chr12 113618609 113618729 -30663760 + MIR SINE MIR 53 188 -74 13110 152 111 18 chr12 113618745 113621075 -30661414 + L1MA3 LINE L1 3361 5472 -2252 4297 31 6 4 chr12 113621075 113621558 -30660931 + SVA Other Other 902 1385 -1 13110 152 111 18 chr12 113621558 113623223 -30659266 + L1MA3 LINE L1 5472 7724 0 974 193 117 21 chr12 113623263 113623502 -30658987 + MIR SINE MIR 1 262 0 297 51 0 0 chr12 113624264 113624303 -30658186 + (A)n Simple_repeat Simple_repeat 1 39 0 276 278 11 17 chr12 113624506 113624686 -30657803 + (TA)n Simple_repeat Simple_repeat 2 180 0 419 329 116 9 chr12 113625035 113625245 -30657244 - MIR SINE MIR -6 256 19 2611 46 20 0 chr12 113625245 113625550 -30656939 - L1PA7 LINE L1 0 6154 5844 419 329 116 9 chr12 113625550 113625564 -30656925 - MIR SINE MIR -243 19 8 859 259 114 69 chr12 113625597 113625761 -30656728 - L2 LINE L2 0 3313 3158 7347 125 58 12 chr12 113625761 113626938 -30655551 - Tigger3b DNA MER2_type 0 1231 1 859 259 114 69 chr12 113626938 113627210 -30655279 - L2 LINE L2 -155 3158 2857 525 268 8 0 chr12 113627212 113627335 -30655154 + MER5A DNA MER1_type 3 126 -63 342 115 0 0 chr12 113627337 113627389 -30655100 + (TG)n Simple_repeat Simple_repeat 2 53 0 932 207 36 0 chr12 113627389 113627582 -30654907 - L1MD3 LINE L1 -8 7987 7788 283 258 32 0 chr12 113627582 113627644 -30654845 + MER5A DNA MER1_type 125 188 -1 394 209 52 52 chr12 113627645 113627779 -30654710 - L2 LINE L2 -449 2865 2732 * 626 239 102 75 chr12 113627765 113628058 -30654431 + L2 LINE L2 3008 3308 -5 360 262 16 115 chr12 113628076 113628267 -30654222 - L2 LINE L2 -579 2735 2564 457 280 30 0 chr12 113628726 113628858 -30653631 + MIR SINE MIR 25 160 -102 214 310 0 0 chr12 113630830 113630888 -30651601 - MIR SINE MIR -62 146 89 22 0 0 0 chr12 113630980 113631002 -30651487 + AT_rich Low_complexity Low_complexity 1 22 0 1478 167 56 52 chr12 113631002 113631290 -30651199 - AluJo SINE Alu -23 289 1 202 328 75 63 chr12 113631392 113631645 -30650844 - L2 LINE L2 0 3313 3058 217 302 47 35 chr12 113632202 113632288 -30650201 + MIR3 SINE MIR 112 198 -10 2459 271 53 22 chr12 113632292 113632469 -30650020 + L1MEc LINE L1 36 206 -6190 2252 137 60 20 chr12 113632469 113632819 -30649670 + THE1B LTR MaLR 1 364 0 2459 271 53 22 chr12 113632819 113633833 -30648656 + L1MEc LINE L1 206 1625 -4771 649 153 105 0 chr12 113633855 113633991 -30648498 + L1MB8 LINE L1 5790 5945 -256 1367 163 15 56 chr12 113634052 113634322 -30648167 + L1MB8 LINE L1 5911 6169 -9 748 228 31 26 chr12 113634324 113634517 -30647972 + L1MEc LINE L1 1622 1815 -4581 258 250 50 10 chr12 113634513 113634613 -30647876 - L1ME LINE L1 -253 5868 5765 * 288 284 34 0 chr12 113634618 113634706 -30647783 - L2 LINE L2 -1732 1582 1492 2370 227 22 4 chr12 113635016 113635550 -30646939 + L1MD3 LINE L1 7428 7971 -24 1183 223 13 13 chr12 113635980 113636204 -30646285 - MER58A DNA MER1_type 0 224 1 270 222 0 0 chr12 113636948 113637002 -30645487 + MER113 DNA MER1_type? 1 54 -467 2112 104 11 0 chr12 113637074 113637352 -30645137 + AluSq SINE Alu 1 281 -32 543 267 50 42 chr12 113637949 113638211 -30644278 - MLT1J LTR MaLR -19 492 229 818 161 0 0 chr12 113638526 113638644 -30643845 + FLAM_A SINE Alu 3 120 -13 26 74 0 0 chr12 113638650 113638704 -30643785 + AT_rich Low_complexity Low_complexity 1 54 0 1067 175 31 57 chr12 113638821 113638883 -30643606 + MER58A DNA MER1_type 2 64 -2356 2092 135 0 7 chr12 113638883 113639186 -30643303 - AluSg SINE Alu -9 301 1 1067 175 31 57 chr12 113639186 113639352 -30643137 + MER58A DNA MER1_type 64 224 0 192 71 0 0 chr12 113639796 113639818 -30642671 + (A)n Simple_repeat Simple_repeat 1 23 0 2030 119 0 4 chr12 113639818 113640095 -30642394 - AluSx SINE Alu -36 276 1 347 275 144 19 chr12 113640766 113640926 -30641563 - MIR SINE MIR -52 210 31 564 283 87 18 chr12 113640926 113641145 -30641344 + MLT1L LTR MaLR 372 605 -10 334 231 30 6 chr12 113641652 113641821 -30640668 + GA-rich Low_complexity Low_complexity 1 173 0 281 375 10 0 chr12 113641856 113641960 -30640529 + MIR SINE MIR 6 110 -152 578 178 22 128 chr12 113642121 113642183 -30640306 + MIR SINE MIR 101 168 -94 2105 128 7 0 chr12 113642183 113642487 -30640002 - AluSx SINE Alu -6 306 1 578 178 22 128 chr12 113642487 113642604 -30639885 + MIR SINE MIR 168 261 -1 463 246 17 8 chr12 113642606 113642724 -30639765 - MIR SINE MIR -124 138 20 2479 115 19 25 chr12 113643121 113643487 -30639002 - THE1B LTR MaLR 0 364 1 509 336 53 25 chr12 113643704 113643948 -30638541 + MIR SINE MIR 12 262 0 1087 266 52 15 chr12 113644424 113644820 -30637669 + LTR16A1 LTR ERVL 72 457 0 3169 164 122 17 chr12 113644882 113645540 -30636949 - LTR8A LTR ERV1 0 727 1 1951 156 112 43 chr12 113645910 113646347 -30636142 - LTR10A LTR ERV1 -61 548 82 1224 129 74 10 chr12 113646779 113646981 -30635508 + MER20 DNA MER1_type 1 215 -4 252 355 44 39 chr12 113647581 113647627 -30634862 + MIR SINE MIR 34 78 -184 1030 184 50 10 chr12 113647627 113647828 -30634661 - MER3 DNA MER1_type 0 209 1 252 355 44 39 chr12 113647828 113647984 -30634505 + MIR SINE MIR 78 237 -25 318 148 19 0 chr12 113648924 113648978 -30633511 - L2 LINE L2 -76 3237 3183 307 264 67 8 chr12 113649529 113649659 -30632830 - MIR SINE MIR -49 213 70 226 100 0 0 chr12 113649823 113649853 -30632636 - MLT2B2 LTR ERVL 0 520 491 6705 130 70 18 chr12 113649855 113649939 -30632550 + Tigger3b DNA MER2_type 24 102 -2926 6552 66 2 18 chr12 113649939 113650731 -30631758 - LTR17 LTR ERV1 0 780 1 6705 130 70 18 chr12 113650731 113651795 -30630694 + Tigger3b DNA MER2_type 102 1231 0 1572 182 161 3 chr12 113651800 113652124 -30630365 - MLT2B2 LTR ERVL -50 465 91 234 62 0 0 chr12 113652668 113652700 -30629789 + (ATG)n Simple_repeat Simple_repeat 2 33 0 397 223 55 19 chr12 113652831 113652971 -30629518 + MLT1L LTR MaLR 148 305 -283 221 279 0 35 chr12 113653905 113653985 -30628504 + MIR SINE MIR 90 147 -61 490 279 91 9 chr12 113654047 113654266 -30628223 + MIR SINE MIR 20 256 -6 339 359 0 0 chr12 113654248 113654351 -30628138 - L2 LINE L2 -8 3305 3203 * 445 376 36 20 chr12 113655103 113655353 -30627136 + L2 LINE L2 2543 2796 -518 641 234 85 0 chr12 113655432 113655573 -30626916 + MLT1L LTR MaLR 126 278 -337 306 319 100 19 chr12 113655617 113655663 -30626826 + MLT1L LTR MaLR 354 395 -220 592 239 9 0 chr12 113655663 113655776 -30626713 - MER81 DNA DNA 0 114 1 306 319 100 19 chr12 113655776 113655889 -30626600 + MLT1L LTR MaLR 395 526 -89 266 319 59 30 chr12 113656236 113656371 -30626118 + L2 LINE L2 3132 3270 -2 1805 75 0 38 chr12 113656644 113656911 -30625578 + L1MA1 LINE L1 6046 6302 0 527 286 134 41 chr12 113657166 113657509 -30624980 + MLT1J2 LTR MaLR 46 420 -30 381 286 85 11 chr12 113657696 113657929 -30624560 - MLT1L LTR MaLR -50 565 231 204 289 19 0 chr12 113658371 113658423 -30624066 + MIR3 SINE MIR 147 199 -9 186 43 0 0 chr12 113658424 113658447 -30624042 + (TC)n Simple_repeat Simple_repeat 2 24 0 1329 213 105 70 chr12 113659168 113659756 -30622733 + L1MC5 LINE L1 6913 7521 -440 383 234 183 51 chr12 113661194 113661369 -30621120 - MIR SINE MIR -60 202 5 476 276 182 0 chr12 113661621 113661824 -30620665 + MIR SINE MIR 23 262 0 28 0 0 0 chr12 113661825 113661853 -30620636 + AT_rich Low_complexity Low_complexity 1 28 0 506 286 40 8 chr12 113662736 113662862 -30619627 + L2 LINE L2 3129 3258 -14 248 245 0 0 chr12 113662938 113662991 -30619498 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 206 345 17 0 chr12 113663073 113663131 -30619358 + L2 LINE L2 3209 3267 -5 389 186 0 12 chr12 113663691 113663777 -30618712 + CT-rich Low_complexity Low_complexity 4 88 0 24 32 0 0 chr12 113664011 113664042 -30618447 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 113664645 113664666 -30617823 + AT_rich Low_complexity Low_complexity 1 21 0 2154 114 3 3 chr12 113664898 113665195 -30617294 - AluSx SINE Alu -12 300 4 570 251 11 56 chr12 113665472 113665651 -30616838 + MLT1I LTR MaLR 1 171 -238 790 223 80 40 chr12 113665685 113665998 -30616491 + LTR16A1 LTR ERVL 78 453 -4 909 336 30 14 chr12 113667050 113667476 -30615013 - L2 LINE L2 -2 3311 2879 269 314 53 68 chr12 113667453 113667660 -30614829 - L2 LINE L2 -353 2961 2758 * 260 312 123 47 chr12 113667660 113667729 -30614760 - L2 LINE L2 -665 2649 2587 225 0 0 0 chr12 113667729 113667754 -30614735 + (GGAGA)n Simple_repeat Simple_repeat 1 25 0 260 312 123 47 chr12 113667754 113667960 -30614529 - L2 LINE L2 -727 2587 2353 379 276 52 0 chr12 113667989 113668105 -30614384 - MIR SINE MIR -104 158 37 1122 148 22 6 chr12 113668408 113668591 -30613898 + MER5A DNA MER1_type 4 189 0 524 196 21 0 chr12 113669300 113669397 -30613092 - MER58A DNA MER1_type 0 128 30 260 204 0 37 chr12 113669502 113669556 -30612933 + MER112 DNA MER1_type 1 52 -208 260 285 89 8 chr12 113669566 113669689 -30612800 + MER112 DNA MER1_type 96 228 -32 380 222 83 42 chr12 113669964 113670108 -30612381 - MER113 DNA MER1_type? -367 154 5 184 309 25 37 chr12 113670193 113670274 -30612215 + L2 LINE L2 3234 3313 0 431 164 46 13 chr12 113670331 113670483 -30612006 + (TGGA)n Simple_repeat Simple_repeat 3 159 0 637 191 107 0 chr12 113671371 113671502 -30610987 + MIR SINE MIR 107 251 -11 396 40 0 0 chr12 113671827 113671877 -30610612 + (TG)n Simple_repeat Simple_repeat 2 51 0 1653 116 64 169 chr12 113672544 113672951 -30609538 + THE1B LTR MaLR 1 364 0 351 315 57 82 chr12 113672979 113673382 -30609107 - L2 LINE L2 -4 3268 2876 26 0 0 0 chr12 113673396 113673422 -30609067 + AT_rich Low_complexity Low_complexity 1 26 0 264 269 85 57 chr12 113673628 113673769 -30608720 + MER5A DNA MER1_type 22 166 -23 205 276 92 51 chr12 113674946 113675044 -30607445 - MIR SINE MIR -12 250 149 * 292 318 20 34 chr12 113675021 113675169 -30607320 + MIR SINE MIR 109 254 -8 438 312 16 0 chr12 113675204 113675329 -30607160 - MIR SINE MIR -105 157 31 2234 194 89 4 chr12 113675830 113676288 -30606201 - MLT1D LTR MaLR -8 497 1 237 246 16 0 chr12 113676294 113676355 -30606134 - L2 LINE L2 -4 3268 3207 548 292 64 9 chr12 113676482 113676701 -30605788 - MIR SINE MIR -21 241 11 2779 113 3 3 chr12 113677519 113677883 -30604606 + THE1B LTR MaLR 1 364 0 680 290 36 14 chr12 113677959 113678180 -30604309 - MIR SINE MIR -4 258 33 30 27 0 0 chr12 113678470 113678507 -30603982 + AT_rich Low_complexity Low_complexity 1 37 0 381 254 34 25 chr12 113678522 113678640 -30603849 - L1ME1 LINE L1 -52 6114 5996 274 253 126 0 chr12 113678747 113678834 -30603655 - LTR10A LTR ERV1 -511 98 1 982 257 72 46 chr12 113679086 113679549 -30602940 - L2 LINE L2 -190 3123 2640 2625 114 13 16 chr12 113679556 113679932 -30602557 + THE1C LTR MaLR 1 375 0 3062 254 135 30 chr12 113680954 113682274 -30600215 - HAL1 LINE L1 -611 1896 438 1154 245 136 24 chr12 113682300 113682676 -30599813 - MLT1J2 LTR MaLR -13 437 20 354 267 121 55 chr12 113682694 113682859 -30599630 + MIR SINE MIR 87 262 0 307 279 88 59 chr12 113683014 113683150 -30599339 - L2 LINE L2 -1 3312 3173 1758 244 234 2 chr12 113683263 113683879 -30598610 + L2 LINE L2 1888 2646 -668 375 268 82 0 chr12 113683943 113684040 -30598449 + L2 LINE L2 3182 3286 -27 477 248 8 66 chr12 113685002 113685123 -30597366 - MER81 DNA DNA 0 114 1 614 282 44 69 chr12 113685295 113685614 -30596875 + LTR16A1 LTR ERVL 5 315 -142 1197 309 57 36 chr12 113685646 113686119 -30596370 + HERV16 LTR ERVL 2352 2834 -2162 1623 335 79 38 chr12 113686318 113687432 -30595057 + HERV16 LTR ERVL 3078 4237 -1417 1602 247 43 18 chr12 113687438 113687884 -30594605 + MER70A LTR ERVL 4 460 -12 1521 336 68 47 chr12 113687885 113688302 -30594187 + HERV16 LTR ERVL 4279 4686 -1078 2360 87 3 0 chr12 113688302 113688601 -30593888 + AluSp SINE Alu 1 300 -13 1521 336 68 47 chr12 113688601 113689232 -30593257 + HERV16 LTR ERVL 4686 5349 -415 1763 248 35 26 chr12 113689355 113689807 -30592682 + LTR16A1 LTR ERVL 1 456 -1 547 273 27 55 chr12 113689903 113690123 -30592366 + MLT1I LTR MaLR 59 272 -137 241 133 56 65 chr12 113690201 113690285 -30592204 + MLT1F LTR MaLR 317 542 0 383 254 55 0 chr12 113690285 113690395 -30592094 + MER103 DNA DNA 6 121 -45 185 294 43 43 chr12 113691329 113691421 -30591068 + L2 LINE L2 2550 2641 -673 426 302 93 23 chr12 113691529 113691744 -30590745 + MIR SINE MIR 30 259 -3 228 255 32 53 chr12 113692250 113692344 -30590145 + L1ME LINE L1 5795 5886 -284 824 185 43 38 chr12 113692394 113692578 -30589911 + L1MC3 LINE L1 5428 5612 -2173 5788 138 49 18 chr12 113692596 113693945 -30588544 - L1MA8 LINE L1 -3 6288 4896 9629 188 92 10 chr12 113693946 113695955 -30586534 + L1MC3 LINE L1 5593 7765 -20 252 249 149 11 chr12 113696554 113696661 -30585828 + MIR SINE MIR 37 154 -67 446 297 43 0 chr12 113696909 113697047 -30585442 + MIR3 SINE MIR 34 177 -31 182 167 0 0 chr12 113697262 113697292 -30585197 + MIR3 SINE MIR 165 194 -14 193 343 27 0 chr12 113697508 113697581 -30584908 - L2 LINE L2 -5 3308 3234 * 323 338 86 45 chr12 113697576 113697798 -30584691 - L2 LINE L2 -558 2756 2526 297 0 0 0 chr12 113698252 113698285 -30584204 + (TG)n Simple_repeat Simple_repeat 2 34 0 324 300 125 8 chr12 113698849 113698969 -30583520 + MIR SINE MIR 19 152 -110 * 647 243 53 6 chr12 113698962 113699131 -30583358 - MIR SINE MIR -84 178 2 357 264 28 0 chr12 113699183 113699289 -30583200 + MIR SINE MIR 84 192 -70 238 311 126 0 chr12 113699392 113699495 -30582994 + L2 LINE L2 3160 3275 -38 332 247 13 0 chr12 113699561 113699638 -30582851 + MIR SINE MIR 150 227 -35 191 327 131 42 chr12 113700221 113700389 -30582100 + MIR SINE MIR 11 193 -69 313 298 15 46 chr12 113700899 113701030 -30581459 + HAL1 LINE L1 215 341 -2166 11490 191 59 31 chr12 113701162 113703873 -30578616 - Charlie6 DNA MER1_type -30 3470 684 326 329 12 6 chr12 113703954 113704124 -30578365 + L1M4 LINE L1 4757 4927 -1219 533 125 144 10 chr12 113704349 113704453 -30578036 - LTR50 LTR ERVL -677 118 1 614 241 97 38 chr12 113704547 113704784 -30577705 + HAL1 LINE L1 2243 2493 -14 2819 112 0 3 chr12 113705134 113705499 -30576990 - THE1B LTR MaLR 0 364 1 216 318 99 44 chr12 113705668 113705920 -30576569 - L2 LINE L2 -191 3081 2816 252 320 32 0 chr12 113706127 113706252 -30576237 - MIR SINE MIR -25 237 109 2154 186 61 11 chr12 113707006 113707451 -30575038 + MLT1C LTR MaLR 1 467 0 195 100 0 0 chr12 113707461 113707491 -30574998 + (T)n Simple_repeat Simple_repeat 1 30 0 352 326 90 11 chr12 113707562 113707763 -30574726 - MIR SINE MIR -13 249 34 1090 226 14 0 chr12 113707806 113708014 -30574475 - MER58A DNA MER1_type -11 213 3 528 323 23 60 chr12 113708672 113709071 -30573418 + MLT1J LTR MaLR 124 507 -4 398 284 41 44 chr12 113709295 113709469 -30573020 - MIR SINE MIR -64 144 4 378 310 109 21 chr12 113709516 113709717 -30572772 + MIR SINE MIR 38 253 -9 366 290 77 13 chr12 113710420 113710575 -30571914 + MIR SINE MIR 28 192 -70 1438 70 5 0 chr12 113710589 113710775 -30571714 - L1PA8 LINE L1 -14 6158 5972 1985 139 37 0 chr12 113711024 113711319 -30571170 - AluSq SINE Alu -7 306 1 532 220 92 21 chr12 113711715 113711856 -30570633 - MLT1J2 LTR MaLR -255 195 45 487 253 106 93 chr12 113712783 113713177 -30569312 + MLT1J LTR MaLR 25 427 -84 2139 201 27 41 chr12 113713177 113713689 -30568800 - MLT1D LTR MaLR 0 505 1 487 253 106 93 chr12 113713689 113713737 -30568752 + MLT1J LTR MaLR 427 473 -38 238 294 73 0 chr12 113713909 113714018 -30568471 + L2 LINE L2 3155 3271 -1 312 215 62 0 chr12 113714271 113714336 -30568153 - MER103 DNA DNA -86 80 12 405 283 18 0 chr12 113715291 113715404 -30567085 - MIR SINE MIR -62 146 32 354 321 27 9 chr12 113716244 113716356 -30566133 - MIR SINE MIR -128 134 21 200 224 0 20 chr12 113716406 113716455 -30566034 - L2 LINE L2 -16 3256 3209 880 256 185 33 chr12 113718620 113719010 -30563479 - MLT1K LTR MaLR -3 585 137 215 122 20 41 chr12 113719620 113719669 -30562820 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 3775 174 17 18 chr12 113719944 113720668 -30561821 + L1MB8 LINE L1 5447 6169 -9 2938 120 7 4 chr12 113720848 113721298 -30561191 - L1PB1 LINE L1 -2 6149 5699 391 263 10 20 chr12 113721373 113721472 -30561017 + MLT1K LTR MaLR 129 226 -362 845 281 41 51 chr12 113721479 113721871 -30560618 + MLT1K LTR MaLR 193 580 -8 194 324 15 0 chr12 113722656 113722724 -30559765 + L2 LINE L2 3189 3257 -15 1002 281 51 84 chr12 113722819 113723293 -30559196 - MLT1K LTR MaLR -42 546 89 207 313 24 71 chr12 113723308 113723477 -30559012 - MIR SINE MIR -62 146 5 25 0 0 0 chr12 113724025 113724050 -30558439 + AT_rich Low_complexity Low_complexity 1 25 0 280 299 79 5 chr12 113724627 113724759 -30557730 + MIR SINE MIR 10 147 -61 220 344 25 16 chr12 113725284 113725406 -30557083 + MIR SINE MIR 140 262 0 2018 121 7 36 chr12 113725420 113725727 -30556762 - AluSx SINE Alu -12 300 3 298 280 19 57 chr12 113726725 113726778 -30555711 + C-rich Low_complexity Low_complexity 4 57 -97 1501 182 7 108 chr12 113726778 113727184 -30555305 + MLT1A1 LTR MaLR 1 365 0 298 280 19 57 chr12 113727184 113727287 -30555202 + C-rich Low_complexity Low_complexity 57 154 0 1031 262 111 41 chr12 113727319 113728208 -30554281 + HAL1b LINE L1 369 1348 0 562 283 11 17 chr12 113728943 113729120 -30553369 - MIR SINE MIR -48 214 39 288 320 50 10 chr12 113729824 113729924 -30552565 + MER91C DNA MER1_type 1 104 -36 525 295 128 13 chr12 113730056 113730290 -30552199 - MIR SINE MIR -1 261 1 1376 175 7 2 chr12 113730312 113730609 -30551880 - MER2 DNA MER2_type 0 345 1 196 312 65 26 chr12 113730675 113730752 -30551737 + L2 LINE L2 3138 3217 -55 2148 141 42 53 chr12 113731715 113732148 -30550341 + MSTA LTR MaLR 1 428 0 1462 200 74 72 chr12 113732153 113732613 -30549876 - MLT1C LTR MaLR -2 465 5 353 309 201 5 chr12 113733484 113733688 -30548801 + MIR SINE MIR 19 262 0 543 277 114 23 chr12 113733861 113734081 -30548408 - MIR SINE MIR -8 254 15 280 234 43 11 chr12 113735183 113735277 -30547212 - MIR SINE MIR -64 198 102 600 160 193 99 chr12 113735429 113735611 -30546878 - MER21B LTR ERV1 -27 904 631 4323 132 20 3 chr12 113735640 113736300 -30546189 + MER50 LTR ERV1 52 722 -12 2748 214 22 52 chr12 113736333 113736544 -30545945 - MER21B LTR ERV1 -220 643 427 1784 158 3 7 chr12 113736544 113736836 -30545653 + AluSx SINE Alu 15 305 -7 2748 214 22 52 chr12 113736836 113737272 -30545217 - MER21B LTR ERV1 -436 427 16 385 184 18 114 chr12 113737683 113737797 -30544692 - MIR SINE MIR -158 104 2 182 340 21 11 chr12 113737813 113737907 -30544582 - L2 LINE L2 -473 2841 2747 592 253 113 18 chr12 113738354 113738583 -30543906 - MIR SINE MIR -9 253 3 241 331 57 32 chr12 113738950 113739074 -30543415 - L2 LINE L2 -2 3270 3144 2484 96 0 0 chr12 113739382 113739694 -30542795 + AluSx SINE Alu 1 312 0 382 226 226 8 chr12 113740502 113740626 -30541863 - MER5A DNA MER1_type -29 160 10 187 143 0 29 chr12 113741406 113741441 -30541048 - L3 LINE CR1 -2 1575 1542 1007 287 6 27 chr12 113742149 113742484 -30540005 + L2 LINE L2 2528 2855 -459 268 150 0 50 chr12 113742487 113742547 -30539942 - MLT2B1 LTR ERVL 0 520 464 211 215 15 31 chr12 113742558 113742623 -30539866 + (TA)n Simple_repeat Simple_repeat 1 64 0 271 186 29 0 chr12 113742628 113742698 -30539791 + L1MC4 LINE L1 6620 6691 -1351 1148 177 20 10 chr12 113742698 113742901 -30539588 - MLT2B1 LTR ERVL -40 480 276 6952 158 10 16 chr12 113742902 113744006 -30538483 - ERVL LTR ERVL -1650 4114 3018 768 279 63 69 chr12 113744007 113744520 -30537969 + L2 LINE L2 2800 3309 -4 239 278 146 49 chr12 113744566 113744771 -30537718 - MER102b DNA MER1_type -10 331 107 658 189 0 8 chr12 113745331 113745463 -30537026 + MIR SINE MIR 132 262 0 5968 204 59 48 chr12 113745553 113747927 -30534562 + L1ME1 LINE L1 3703 6114 -52 30 27 0 0 chr12 113747942 113747979 -30534510 + AT_rich Low_complexity Low_complexity 1 37 0 626 296 35 7 chr12 113748264 113748492 -30533997 + MIR SINE MIR 27 258 -4 222 193 0 0 chr12 113748513 113748570 -30533919 + (ATG)n Simple_repeat Simple_repeat 2 58 0 676 314 75 41 chr12 113748775 113749332 -30533157 - L2 LINE L2 -467 2847 2272 462 269 26 26 chr12 113749466 113749622 -30532867 + MIR SINE MIR 103 258 -4 413 294 108 41 chr12 113749754 113749884 -30532605 + MIR SINE MIR 41 190 -72 2080 159 43 68 chr12 113749884 113750400 -30532089 + MLT1D LTR MaLR 1 503 -2 413 294 108 41 chr12 113750400 113750463 -30532026 + MIR SINE MIR 190 247 -15 272 370 50 0 chr12 113750581 113750700 -30531789 - L2 LINE L2 -46 3226 3102 26 0 0 0 chr12 113751086 113751112 -30531377 + AT_rich Low_complexity Low_complexity 1 26 0 1984 158 3 10 chr12 113751117 113751428 -30531061 + AluSx SINE Alu 1 309 -3 288 242 121 45 chr12 113751742 113751874 -30530615 - L2 LINE L2 0 3313 3172 490 275 7 7 chr12 113752322 113752460 -30530029 + MIR SINE MIR 20 157 -105 327 306 8 60 chr12 113752821 113752955 -30529534 + MIR3 SINE MIR 52 178 -30 2087 155 0 0 chr12 113753556 113753853 -30528636 - AluSx SINE Alu -15 297 1 257 284 74 32 chr12 113753865 113753960 -30528529 + L2 LINE L2 3122 3220 -52 2253 110 10 0 chr12 113754517 113754818 -30527671 + AluSx SINE Alu 1 304 -8 607 265 130 0 chr12 113755019 113755242 -30527247 + MIR SINE MIR 11 262 0 266 323 74 0 chr12 113755835 113756007 -30526482 + MIR SINE MIR 3 191 -63 316 294 0 22 chr12 113756732 113756824 -30525665 - L2 LINE L2 -4 3268 3179 223 196 0 22 chr12 113757343 113757389 -30525100 - MIR SINE MIR -201 61 17 428 284 79 8 chr12 113759091 113759218 -30523271 + MIR3 SINE MIR 6 141 -67 276 321 18 9 chr12 113759235 113759347 -30523142 + L2 LINE L2 3199 3311 -2 1014 249 69 102 chr12 113760696 113761174 -30521315 + MLT1K LTR MaLR 124 585 -3 2112 171 3 0 chr12 113762270 113762610 -30519879 - MER7A DNA MER2_type -7 339 1 419 182 166 107 chr12 113762623 113762810 -30519679 - MLT1J2 LTR MaLR -11 435 238 1015 255 19 8 chr12 113762836 113763095 -30519394 - LTR16A LTR ERVL -12 438 177 809 221 18 0 chr12 113763224 113763387 -30519102 - MER58A DNA MER1_type -35 189 24 640 244 72 6 chr12 113763398 113763578 -30518911 - MLT1J2 LTR MaLR -258 192 1 470 248 95 13 chr12 113763795 113763999 -30518490 + MIR SINE MIR 23 249 -13 1505 130 0 0 chr12 113764020 113764227 -30518262 + AluSg/x SINE Alu 76 282 -30 1872 135 21 10 chr12 113764293 113764582 -30517907 + AluJo SINE Alu 5 296 -16 258 243 0 27 chr12 113764585 113764659 -30517830 + MIR SINE MIR 79 150 -112 301 181 241 53 chr12 113764880 113765013 -30517476 - MLT1H LTR MaLR -34 515 358 277 198 12 47 chr12 113765117 113765203 -30517286 - MLT1J2 LTR MaLR -439 103 21 558 150 2 18 chr12 113765420 113765523 -30516966 - MLT1J2 LTR MaLR -267 142 48 1957 173 29 24 chr12 113766343 113766725 -30515764 - MER45B DNA AcHobo 0 1040 657 957 127 0 0 chr12 113766736 113766862 -30515627 + AluSq/x SINE Alu 8 133 -180 982 188 0 6 chr12 113766916 113767092 -30515397 - AluSg/x SINE Alu -9 301 127 363 87 0 0 chr12 113767098 113767144 -30515345 - Alu SINE Alu -256 46 1 2958 197 100 2 chr12 113767144 113767722 -30514767 - MER45B DNA AcHobo -399 641 7 510 309 22 69 chr12 113767733 113768195 -30514294 + L2 LINE L2 2313 2752 -562 481 306 118 20 chr12 113768190 113768487 -30514002 + L2 LINE L2 2988 3313 0 * 268 238 71 0 chr12 113768741 113768825 -30513664 + MER94 DNA DNA 40 129 -5 746 50 0 10 chr12 113768937 113769037 -30513452 + (TTC)n Simple_repeat Simple_repeat 3 101 0 213 114 0 0 chr12 113769037 113769067 -30513422 + (TC)n Simple_repeat Simple_repeat 2 31 0 261 228 87 22 chr12 113769090 113769182 -30513307 - MLT1K LTR MaLR -304 284 187 295 264 157 0 chr12 113769361 113769482 -30513007 - L2 LINE L2 -217 3055 2916 482 231 15 22 chr12 113769759 113769893 -30512596 - MER112 DNA MER1_type -58 202 70 511 268 19 68 chr12 113772792 113772997 -30509492 + L2 LINE L2 3119 3313 0 3518 253 60 105 chr12 113773117 113774882 -30507607 + L1M3b LINE L1 3 1642 -4709 2168 107 3 6 chr12 113774882 113775199 -30507290 + L1PB1 LINE L1 5833 6148 -3 3518 253 60 105 chr12 113775199 113775534 -30506955 + L1M3b LINE L1 1642 1990 -4361 663 276 35 0 chr12 113775549 113775723 -30506766 - MIR SINE MIR -73 189 10 244 226 333 0 chr12 113775943 113776045 -30506444 - MIR SINE MIR -93 169 34 210 143 0 0 chr12 113776955 113776990 -30505499 + (TAA)n Simple_repeat Simple_repeat 2 36 0 456 345 17 6 chr12 113777207 113777381 -30505108 - MER91A DNA MER1_type -1 195 20 395 260 29 0 chr12 113778055 113778159 -30504330 + L2 LINE L2 3205 3311 -2 231 242 15 30 chr12 113778173 113778239 -30504250 - L2 LINE L2 -211 3061 2997 865 235 73 66 chr12 113779389 113779968 -30502521 - L2 LINE L2 -23 3290 2690 537 258 50 6 chr12 113779979 113780138 -30502351 - MIR SINE MIR -50 212 47 1218 147 84 52 chr12 113780140 113780250 -30502239 + L1MA9 LINE L1 5997 6102 -210 2135 122 0 3 chr12 113780250 113780562 -30501927 + AluSx SINE Alu 2 312 0 1218 147 84 52 chr12 113780562 113780616 -30501873 + L1MA9 LINE L1 6102 6153 -159 264 59 0 0 chr12 113780616 113780650 -30501839 + (CA)n Simple_repeat Simple_repeat 1 34 0 1218 147 84 52 chr12 113780650 113780769 -30501720 + L1MA9 LINE L1 6153 6291 -21 40 49 0 0 chr12 113780807 113780868 -30501621 + AT_rich Low_complexity Low_complexity 1 61 0 2792 232 117 33 chr12 113781271 113781524 -30500965 - L2 LINE L2 -610 2704 2474 1542 191 0 23 chr12 113781524 113781823 -30500666 + AluJo SINE Alu 1 292 -20 2792 232 117 33 chr12 113781823 113782558 -30499931 - L2 LINE L2 -840 2474 1623 2100 143 60 20 chr12 113782558 113782908 -30499581 + THE1B LTR MaLR 1 364 0 2792 232 117 33 chr12 113782908 113782953 -30499536 - L2 LINE L2 -1691 1623 1583 225 255 52 46 chr12 113783530 113783683 -30498806 + L1M3b LINE L1 2351 2504 -3846 180 0 0 0 chr12 113783976 113783996 -30498493 + (T)n Simple_repeat Simple_repeat 1 20 0 262 326 53 23 chr12 113784335 113784467 -30498022 + L2 LINE L2 2568 2703 -611 328 310 33 113 chr12 113784613 113785010 -30497479 + L2 LINE L2 2893 3257 -15 243 0 0 0 chr12 113785011 113785038 -30497451 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 197 33 33 0 chr12 113785179 113785209 -30497280 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 193 284 34 34 chr12 113786801 113786889 -30495600 - MIR SINE MIR -15 247 160 936 265 8 24 chr12 113786904 113787157 -30495332 + MIR SINE MIR 3 251 -11 277 289 26 0 chr12 113787152 113787228 -30495261 - MIR3 SINE MIR -47 161 84 * 1774 214 35 104 chr12 113787349 113787804 -30494685 + L1MC4 LINE L1 7437 7774 -221 2429 75 0 3 chr12 113787804 113788097 -30494392 + AluY SINE Alu 1 292 -19 1774 214 35 104 chr12 113788097 113788305 -30494184 + L1MC4 LINE L1 7774 7995 0 280 291 73 83 chr12 113788843 113789145 -30493344 - L2 LINE L2 0 3272 2974 3334 150 9 57 chr12 113789197 113790596 -30491893 + L1MB2 LINE L1 5532 6165 -6 2705 124 31 12 chr12 113789276 113790247 -30492242 + MSTA LTR MaLR 1 1298 -55 2182 106 0 3 chr12 113790247 113790563 -30491926 - AluSx SINE Alu 0 315 1 2705 124 31 12 chr12 113790563 113790621 -30491868 + MSTA LTR MaLR 1298 1353 0 873 198 13 114 chr12 113790918 113791155 -30491334 + MER58A DNA MER1_type 9 221 -3 989 189 29 23 chr12 113792019 113792240 -30490249 + MER20 DNA MER1_type 1 213 -6 1017 288 56 44 chr12 113792365 113792883 -30489606 - MLT1L LTR MaLR -91 524 1 236 224 0 17 chr12 113792952 113793010 -30489479 - MER5A DNA MER1_type 0 189 133 * 257 323 73 16 chr12 113793007 113793131 -30489358 + MER5A DNA MER1_type 53 183 -6 255 261 15 0 chr12 113793394 113793459 -30489030 - MIR SINE MIR -13 249 184 350 231 0 26 chr12 113793490 113793568 -30488921 + MER21B LTR ERV1 1 76 -787 22 56 0 0 chr12 113794998 113795034 -30487455 + AT_rich Low_complexity Low_complexity 1 36 0 1665 232 71 47 chr12 113796186 113796794 -30485695 + MER21B LTR ERV1 59 734 -129 448 275 58 18 chr12 113796817 113796988 -30485501 - MIR SINE MIR -69 193 16 522 250 21 14 chr12 113797103 113797270 -30485219 - MER5A DNA MER1_type -10 179 1 887 268 67 26 chr12 113797818 113798387 -30484102 + MLT1G1 LTR MaLR 4 554 -1 187 180 180 0 chr12 113798425 113798475 -30484014 + MER5C DNA MER1_type 1 59 -265 894 249 135 69 chr12 113798476 113798853 -30483636 - MER57A LTR ERV1 0 403 1 213 202 169 11 chr12 113798859 113798948 -30483541 + MER5C DNA MER1_type 75 177 -147 275 174 32 24 chr12 113799137 113799225 -30483264 - MLT1L LTR MaLR -8 607 414 892 228 21 5 chr12 113799349 113799542 -30482947 + LTR16C LTR ERVL 246 441 -50 419 297 81 6 chr12 113799890 113800107 -30482382 + MIR SINE MIR 16 247 -15 326 158 42 74 chr12 113800791 113800886 -30481603 - MER69 DNA AcHobo 0 2526 2435 1010 188 44 0 chr12 113800924 113801105 -30481384 + MLT1E LTR MaLR 403 591 -2 2960 109 21 76 chr12 113801264 113801778 -30480711 + LTR45B LTR ERV1 3 488 -1 180 339 31 0 chr12 113802076 113802141 -30480348 - L3 LINE CR1 -6 1571 1505 906 286 36 48 chr12 113802141 113802343 -30480146 + MLT1J LTR MaLR 151 349 -162 2100 145 3 0 chr12 113802343 113802646 -30479843 + AluSx SINE Alu 3 306 -6 906 286 36 48 chr12 113802646 113802800 -30479689 + MLT1J LTR MaLR 349 503 -8 1523 191 42 69 chr12 113802879 113803256 -30479233 + MLT1A2 LTR MaLR 4 370 -4 202 343 9 38 chr12 113803455 113803560 -30478929 - L3 LINE CR1 -347 1230 1129 1138 248 75 82 chr12 113804008 113804545 -30477944 + MLT1K LTR MaLR 56 588 0 203 311 0 0 chr12 113805337 113805398 -30477091 - MIR SINE MIR -118 144 84 227 372 20 0 chr12 113805575 113805723 -30476766 + (CATA)n Simple_repeat Simple_repeat 4 154 0 213 39 0 0 chr12 113805731 113805757 -30476732 + (CA)n Simple_repeat Simple_repeat 2 27 0 259 300 122 17 chr12 113806758 113806988 -30475501 + L1ME LINE L1 4780 5033 -1113 346 284 0 24 chr12 113807140 113807267 -30475222 + L1ME LINE L1 5036 5159 -987 342 146 31 10 chr12 113807531 113807627 -30474862 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 409 252 45 73 chr12 113807995 113808254 -30474235 - MIR3 SINE MIR -6 256 7 779 243 119 13 chr12 113808828 113809063 -30473426 - MIR SINE MIR 0 262 3 2118 122 3 7 chr12 113809218 113809514 -30472975 + AluSx SINE Alu 1 295 -17 235 162 0 0 chr12 113809972 113810009 -30472480 + MER3 DNA MER1_type 14 50 -159 284 257 92 0 chr12 113810056 113810165 -30472324 + MER91C DNA MER1_type 22 140 0 182 62 31 0 chr12 113810449 113810481 -30472008 + (CCA)n Simple_repeat Simple_repeat 1 33 0 506 270 32 22 chr12 113811185 113811370 -30471119 - L2 LINE L2 -229 3043 2857 430 189 63 27 chr12 113811608 113811719 -30470770 + MER53 DNA DNA 4 118 -71 335 241 13 0 chr12 113811876 113811955 -30470534 + L1ME LINE L1 5557 5636 -485 1791 177 7 3 chr12 113812073 113812378 -30470111 + AluSx SINE Alu 2 307 -5 4102 69 4 9 chr12 113812452 113813002 -30469487 - L1PB1 LINE L1 -3 6148 5602 446 337 148 28 chr12 113813659 113814086 -30468403 - L2 LINE L2 -20 3293 2816 392 304 138 9 chr12 113814120 113814337 -30468152 - MIR SINE MIR -4 258 14 2132 131 27 29 chr12 113814667 113815041 -30467448 - THE1C LTR MaLR -2 373 1 246 227 0 0 chr12 113815101 113815176 -30467313 + C-rich Low_complexity Low_complexity 3 77 0 683 214 0 6 chr12 113815200 113815373 -30467116 + C-rich Low_complexity Low_complexity 1 172 0 467 269 12 0 chr12 113815390 113815557 -30466932 + CT-rich Low_complexity Low_complexity 3 171 0 * 746 191 0 19 chr12 113815519 113815739 -30466750 + C-rich Low_complexity Low_complexity 1 215 0 241 271 43 86 chr12 113816324 113816464 -30466025 + MIR SINE MIR 16 149 -59 686 308 120 5 chr12 113816475 113816952 -30465537 + MLT1K LTR MaLR 18 572 -16 7687 161 157 30 chr12 113816992 113818549 -30463940 - MER52A LTR ERV1 0 1755 1 191 284 30 0 chr12 113818593 113818660 -30463829 - MIR SINE MIR -184 78 10 1890 131 55 30 chr12 113818827 113819155 -30463334 - THE1C LTR MaLR -37 338 3 1752 168 7 43 chr12 113819339 113819642 -30462847 + AluJo SINE Alu 1 292 -20 266 294 0 0 chr12 113820167 113820235 -30462254 + L2 LINE L2 3242 3309 -4 1753 248 60 63 chr12 113820697 113820908 -30461581 + L1MC4a LINE L1 5374 5584 -2224 2025 127 79 20 chr12 113820908 113821262 -30461227 - THE1C LTR MaLR 0 375 1 1753 248 60 63 chr12 113821262 113821904 -30460585 + L1MC4a LINE L1 5584 6224 -1584 243 174 0 0 chr12 113822154 113822200 -30460289 - LTR66 LTR ERVL -171 439 394 243 174 0 0 chr12 113822162 113822208 -30460281 + LTR66 LTR ERVL 394 439 -171 615 242 64 145 chr12 113822572 113823117 -30459372 - MLT1J LTR MaLR -2 509 9 299 192 13 26 chr12 113823207 113823285 -30459204 + MER53 DNA DNA 103 179 -10 * 324 247 12 12 chr12 113823219 113823304 -30459185 - MER53 DNA DNA -104 85 1 364 269 127 35 chr12 113823355 113823552 -30458937 + MIR SINE MIR 7 221 -41 192 233 121 52 chr12 113823814 113823930 -30458559 + MIR SINE MIR 121 244 -18 499 252 33 13 chr12 113824953 113825104 -30457385 + MIR SINE MIR 47 200 -62 517 254 0 8 chr12 113825467 113825597 -30456892 + LTR67 LTR ERVL 429 557 0 1935 190 165 32 chr12 113825775 113826328 -30456161 - MLT1E2 LTR MaLR 0 626 1 39 0 0 0 chr12 113826814 113826853 -30455636 + AT_rich Low_complexity Low_complexity 1 39 0 435 254 168 14 chr12 113827278 113827487 -30455002 + MIR SINE MIR 11 251 -11 236 332 34 39 chr12 113827583 113827725 -30454764 + MIR SINE MIR 24 165 -62 2532 111 5 22 chr12 113827748 113828118 -30454371 - THE1B LTR MaLR 0 364 1 282 236 160 7 chr12 113828118 113828346 -30454143 + LTR33 LTR ERVL 21 335 -186 2770 146 55 47 chr12 113828372 113828878 -30453611 - MER21A LTR ERV1 -6 925 416 644 288 46 46 chr12 113828880 113829165 -30453324 - MLT1K LTR MaLR -15 573 289 208 154 15 77 chr12 113829559 113829624 -30452865 + CT-rich Low_complexity Low_complexity 1 61 0 351 305 110 30 chr12 113830617 113830781 -30451708 + MIR SINE MIR 6 182 -80 188 240 20 0 chr12 113831321 113831371 -30451118 + L2 LINE L2 3263 3313 0 207 298 48 25 chr12 113831635 113831733 -30450756 + MIR SINE MIR 11 112 -96 1784 304 69 39 chr12 113831734 113833466 -30449023 + L1MEc LINE L1 37 1820 -4576 484 259 17 17 chr12 113833461 113833635 -30448854 + L1MEc LINE L1 2965 3138 -3077 * 5151 221 60 37 chr12 113833623 113834106 -30448383 + L1MEc LINE L1 3567 4037 -2184 2243 107 0 7 chr12 113834106 113834404 -30448085 + AluSx SINE Alu 1 296 -16 5151 221 60 37 chr12 113834404 113835683 -30446806 + L1MEc LINE L1 4037 5371 -850 468 149 11 0 chr12 113835687 113835774 -30446715 - MSTC LTR MaLR 0 428 341 356 266 42 49 chr12 113837046 113837189 -30445300 + MIR SINE MIR 8 149 -113 416 272 83 46 chr12 113837328 113837738 -30444751 + MLT1J2 LTR MaLR 2 450 0 431 238 81 50 chr12 113838308 113838468 -30444021 + L2 LINE L2 2926 3090 -223 281 262 24 24 chr12 113838559 113838643 -30443846 + MLT1L LTR MaLR 499 582 -33 383 288 88 0 chr12 113838750 113838875 -30443614 - MIR SINE MIR -28 234 99 816 291 98 30 chr12 113838956 113839355 -30443134 + MLT1K LTR MaLR 145 570 -18 190 370 33 0 chr12 113839471 113839563 -30442926 + L2 LINE L2 2868 2962 -310 202 275 150 0 chr12 113839832 113839912 -30442577 - MIR3 SINE MIR -19 189 98 753 169 56 17 chr12 113840082 113840260 -30442229 - MER53 DNA DNA -1 188 4 280 189 19 0 chr12 113840988 113841041 -30441448 + MLT1K LTR MaLR 511 564 -24 203 125 25 0 chr12 113841128 113841168 -30441321 + A-rich Low_complexity Low_complexity 2 42 0 252 0 0 0 chr12 113843051 113843079 -30439410 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 497 224 109 44 chr12 113843927 113844110 -30438379 - MER117 DNA MER1_type 0 197 3 282 160 0 0 chr12 113846678 113846728 -30435761 - L2 LINE L2 -2 3311 3262 322 234 9 45 chr12 113846821 113846869 -30435620 + (TA)n Simple_repeat Simple_repeat 1 49 -58 3594 186 6 15 chr12 113846869 113847526 -30434963 - MER82 DNA MER2_type -2 651 1 322 234 9 45 chr12 113847526 113847588 -30434901 + (TA)n Simple_repeat Simple_repeat 49 107 0 241 227 0 0 chr12 113847699 113847743 -30434746 + MLT1G3 LTR MaLR 64 107 -423 328 77 0 77 chr12 113847762 113847827 -30434662 + Alu SINE Alu 242 301 -1 292 302 38 0 chr12 113848201 113848307 -30434182 - MIR3 SINE MIR -21 187 78 374 282 11 70 chr12 113848914 113849088 -30433401 - MIR SINE MIR -62 146 30 769 282 87 8 chr12 113849197 113849449 -30433040 - Charlie8 DNA MER1_type -2143 274 3 388 253 112 65 chr12 113849980 113850347 -30432142 + L1ME4a LINE L1 5728 6111 -10 297 267 34 27 chr12 113850781 113850927 -30431562 + MER113 DNA MER1_type? 1 147 -374 183 253 40 91 chr12 113851214 113851313 -30431176 + MIR SINE MIR 99 192 -70 1921 100 0 0 chr12 113851344 113851585 -30430904 + AluSx SINE Alu 53 293 -19 195 204 0 0 chr12 113851746 113851790 -30430699 + (TA)n Simple_repeat Simple_repeat 1 44 0 233 172 0 52 chr12 113851793 113851851 -30430638 - LTR66 LTR ERVL -171 439 385 180 0 0 0 chr12 113851998 113852018 -30430471 + (TAA)n Simple_repeat Simple_repeat 2 21 0 359 167 192 0 chr12 113852104 113852182 -30430307 + L1MB3 LINE L1 6081 6173 -10 217 263 0 18 chr12 113852196 113852253 -30430236 - MIR SINE MIR -63 145 90 297 0 0 0 chr12 113853043 113853076 -30429413 + (CA)n Simple_repeat Simple_repeat 2 34 0 497 276 0 13 chr12 113853192 113853348 -30429141 + MIR SINE MIR 99 252 -10 1419 252 73 9 chr12 113853443 113853892 -30428597 - MER113 DNA MER1_type? -43 478 1 1863 155 53 0 chr12 113854459 113854782 -30427707 + L1MB3 LINE L1 5840 6179 -4 309 263 148 37 chr12 113854946 113855163 -30427326 + MIR SINE MIR 21 261 -1 372 230 0 0 chr12 113855424 113855511 -30426978 + MER5A DNA MER1_type 14 100 -89 437 259 12 56 chr12 113855556 113855718 -30426771 + MIR SINE MIR 104 258 -4 232 294 47 0 chr12 113855725 113855810 -30426679 + MIR SINE MIR 100 188 -74 884 213 0 0 chr12 113855834 113855998 -30426491 + FRAM SINE Alu 1 157 -19 532 210 0 93 chr12 113856013 113856175 -30426314 - MIR SINE MIR -26 236 90 219 359 46 15 chr12 113856870 113857001 -30425488 + MIR SINE MIR 122 256 -6 191 336 34 17 chr12 113857020 113857139 -30425350 + L2 LINE L2 2928 3048 -224 367 285 69 14 chr12 113857223 113857367 -30425122 - L2 LINE L2 -213 3059 2908 360 272 158 11 chr12 113857393 113857577 -30424912 + L2 LINE L2 3040 3250 -63 268 291 117 0 chr12 113857620 113857723 -30424766 + L2 LINE L2 3199 3313 0 246 214 68 87 chr12 113857812 113857915 -30424574 - MSTC LTR MaLR -288 140 40 256 200 47 71 chr12 113858878 113858963 -30423526 - L2 LINE L2 0 3313 3231 263 315 99 9 chr12 113858976 113859087 -30423402 + MIR3 SINE MIR 73 193 -15 223 307 0 68 chr12 113859860 113859948 -30422541 + L2 LINE L2 3182 3263 -9 304 330 128 0 chr12 113859999 113860108 -30422381 - MIR SINE MIR -123 139 17 377 240 129 41 chr12 113860163 113860334 -30422155 - MIR SINE MIR -70 192 7 809 227 6 12 chr12 113861098 113861261 -30421228 + MIR SINE MIR 28 189 -73 316 279 54 27 chr12 113861340 113861451 -30421038 + L2 LINE L2 3151 3264 -8 1442 165 18 18 chr12 113863453 113863750 -30418739 - AluJo SINE Alu 0 310 14 364 292 51 7 chr12 113863843 113863980 -30418509 + L1ME4a LINE L1 5622 5764 -357 723 177 5 0 chr12 113864056 113864259 -30418230 + L1MD3 LINE L1 7728 7995 0 490 266 26 7 chr12 113864278 113864432 -30418057 + L1ME4a LINE L1 5964 6120 -1 266 287 21 32 chr12 113865077 113865171 -30417318 + L2 LINE L2 2740 2832 -482 538 183 92 78 chr12 113865190 113865332 -30417157 + L2 LINE L2 3169 3312 -1 502 262 29 52 chr12 113865363 113865535 -30416954 - MIR SINE MIR 0 262 95 451 299 51 17 chr12 113866315 113866492 -30415997 + MIR SINE MIR 80 262 0 205 176 0 0 chr12 113866694 113866728 -30415761 + GA-rich Low_complexity Low_complexity 1 34 0 1906 129 14 3 chr12 113867266 113867560 -30414929 + AluSx SINE Alu 1 297 -15 519 269 118 34 chr12 113868160 113868398 -30414091 - MIR SINE MIR -2 260 3 240 186 0 0 chr12 113868622 113868665 -30413824 - MIR3 SINE MIR -4 204 162 380 261 200 0 chr12 113869552 113869667 -30412822 - MIR SINE MIR 0 262 125 875 152 0 0 chr12 113869671 113869803 -30412686 + FLAM_C SINE Alu 2 133 0 1346 243 36 61 chr12 113869821 113869993 -30412496 - L1ME3A LINE L1 -99 6071 5896 1853 92 78 4 chr12 113869993 113870264 -30412225 + AluSc SINE Alu 1 291 -18 1346 243 36 61 chr12 113870264 113870536 -30411953 - L1ME3A LINE L1 -274 5896 5638 1889 134 0 32 chr12 113871551 113871865 -30410624 - AluJb SINE Alu -8 304 1 389 184 11 35 chr12 113873217 113873304 -30409185 + MIR SINE MIR 61 145 -117 533 221 0 10 chr12 113874608 113874712 -30407777 + MER5B DNA MER1_type 76 178 0 617 210 91 17 chr12 113874813 113875015 -30407474 - MIR SINE MIR -3 259 44 256 152 22 0 chr12 113875054 113875100 -30407389 + MADE1 DNA Mariner 1 47 -33 184 119 71 48 chr12 113875116 113875158 -30407331 + MIR SINE MIR 204 246 -16 211 200 0 0 chr12 113875174 113875214 -30407275 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 474 224 0 19 chr12 113875490 113875597 -30406892 - MER5A DNA MER1_type 0 189 85 592 317 91 0 chr12 113877307 113877537 -30404952 + MIR SINE MIR 12 262 0 1100 161 0 0 chr12 113877544 113877718 -30404771 - AluSg/x SINE Alu -9 303 130 350 140 8 0 chr12 113878125 113878192 -30404297 - Alu SINE Alu -254 48 1 581 316 145 14 chr12 113878197 113878701 -30403788 + L2 LINE L2 2694 3272 0 233 98 24 0 chr12 113878823 113878864 -30403625 + (TTG)n Simple_repeat Simple_repeat 3 44 0 1762 185 65 5 chr12 113879354 113879722 -30402767 + MLT1B LTR MaLR 1 390 0 372 245 20 20 chr12 113879726 113879824 -30402665 + MIR SINE MIR 95 192 -70 266 275 0 38 chr12 113880242 113880322 -30402167 - Charlie4 DNA MER1_type -3 1958 1882 1234 164 10 0 chr12 113880356 113880563 -30401926 + MER3 DNA MER1_type 1 209 0 408 301 3 14 chr12 113880698 113880868 -30401621 - MIR SINE MIR -58 204 40 188 310 78 23 chr12 113881509 113881638 -30400851 + L2 LINE L2 2928 3063 -209 2677 92 11 5 chr12 113881679 113882047 -30400442 + THE1C LTR MaLR 1 370 -5 1990 149 0 0 chr12 113882087 113882388 -30400101 - AluSx SINE Alu -11 301 1 823 161 51 0 chr12 113882532 113882669 -30399820 - MER5A DNA MER1_type -45 144 1 1973 140 3 0 chr12 113882974 113883274 -30399215 - AluSx SINE Alu -10 302 2 546 295 39 23 chr12 113883319 113883624 -30398865 + L1ME4a LINE L1 5613 5922 -199 262 0 53 0 chr12 113884773 113884811 -30397678 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 215 308 13 64 chr12 113885982 113886060 -30396429 + L2 LINE L2 3229 3302 -11 255 228 0 51 chr12 113886061 113886140 -30396349 + GA-rich Low_complexity Low_complexity 4 78 0 184 259 19 19 chr12 113887190 113887244 -30395245 - MIR SINE MIR -90 118 65 268 240 19 136 chr12 113887267 113887421 -30395068 - MIR SINE MIR 0 262 127 429 141 0 35 chr12 113887512 113887597 -30394892 + MER58 DNA MER1_type 43 124 -91 729 243 162 14 chr12 113887669 113887891 -30394598 + MIR SINE MIR 1 255 -7 487 233 172 18 chr12 113889085 113889248 -30393241 + MIR SINE MIR 74 261 -1 389 188 99 20 chr12 113889623 113889724 -30392765 - MER5A DNA MER1_type -77 112 4 329 235 284 82 chr12 113889789 113889972 -30392517 - MIR SINE MIR -3 259 40 246 326 7 52 chr12 113889987 113890122 -30392367 + L3 LINE CR1 700 828 -749 399 206 27 103 chr12 113891473 113891619 -30390870 + MER5A DNA MER1_type 50 184 -5 361 167 17 0 chr12 113892408 113892468 -30390021 + MIR SINE MIR 119 179 -83 554 245 38 25 chr12 113892559 113892718 -30389771 - MIR3 SINE MIR -18 190 30 226 395 12 0 chr12 113894094 113894175 -30388314 + L2 LINE L2 3199 3280 -33 294 240 27 13 chr12 113894350 113894425 -30388064 + MIR SINE MIR 110 185 -77 453 260 150 53 chr12 113894445 113894672 -30387817 - MIR SINE MIR -1 261 13 294 218 0 0 chr12 113894687 113894742 -30387747 + L2 LINE L2 3251 3305 -8 310 256 0 49 chr12 113895894 113895976 -30386513 + L2 LINE L2 3226 3303 -10 228 247 142 37 chr12 113896216 113896378 -30386111 - MIR SINE MIR -71 191 13 22 0 0 0 chr12 113898430 113898452 -30384037 + AT_rich Low_complexity Low_complexity 1 22 0 644 280 6 6 chr12 113898952 113899127 -30383362 - MER5B DNA MER1_type 0 178 4 316 290 90 33 chr12 113899134 113899319 -30383170 + MIR SINE MIR 16 210 -52 1746 170 0 0 chr12 113899488 113899782 -30382707 + AluSx SINE Alu 1 294 -18 543 301 32 11 chr12 113900366 113900552 -30381937 + MIR SINE MIR 73 262 0 390 273 5 107 chr12 113900707 113900912 -30381577 + MER5A DNA MER1_type 6 189 0 334 325 26 17 chr12 113900912 113901023 -30381466 + L2 LINE L2 3153 3264 -8 334 258 0 67 chr12 113901118 113901207 -30381282 - L2 LINE L2 -1 3271 3189 986 167 97 0 chr12 113901328 113901514 -30380975 + MER3 DNA MER1_type 6 209 0 406 217 54 22 chr12 113902452 113902544 -30379945 - L2 LINE L2 -40 3273 3179 372 305 8 34 chr12 113902628 113902746 -30379743 + L2 LINE L2 3191 3305 -8 1843 112 48 0 chr12 113902746 113903055 -30379434 + AluSx SINE Alu 1 322 0 463 223 25 16 chr12 113903088 113903209 -30379280 - MIR3 SINE MIR -48 160 39 359 306 27 0 chr12 113903236 113903347 -30379142 - L2 LINE L2 -7 3306 3193 499 308 142 19 chr12 113903406 113903617 -30378872 + MIR SINE MIR 11 247 -15 190 233 183 17 chr12 113904262 113904322 -30378167 + L2 LINE L2 3157 3226 -46 487 271 86 0 chr12 113904502 113904642 -30377847 + MIR SINE MIR 111 262 0 415 274 74 7 chr12 113905027 113905162 -30377327 - MIR SINE MIR 0 262 119 1559 179 23 13 chr12 113905182 113905484 -30377005 - AluJo SINE Alu -6 306 2 234 266 0 16 chr12 113905793 113905857 -30376632 - MIR3 SINE MIR -24 184 122 291 281 281 0 chr12 113905965 113906143 -30376346 - MIR SINE MIR -6 256 29 1948 138 3 3 chr12 113906147 113906452 -30376037 - AluSx SINE Alu -4 308 4 368 206 103 31 chr12 113907378 113907475 -30375014 - L2 LINE L2 0 3272 3169 428 307 21 58 chr12 113907731 113907972 -30374517 - MIR SINE MIR 0 262 31 2134 112 0 0 chr12 113908001 113908305 -30374184 - AluSx SINE Alu -8 304 1 323 207 70 150 chr12 113908619 113908832 -30373657 + MER91A DNA MER1_type 1 196 0 509 302 81 18 chr12 113908836 113909058 -30373431 - MIR SINE MIR -12 250 15 2191 138 27 3 chr12 113909204 113909575 -30372914 - L1MB8 LINE L1 -4 6174 5795 2605 128 48 97 chr12 113909575 113909781 -30372708 - L1MB8 LINE L1 -5 6173 5626 189 231 0 39 chr12 113910047 113910099 -30372390 + L3 LINE CR1 1264 1313 -264 224 339 0 0 chr12 113910368 113910433 -30372056 - L2 LINE L2 -5 3267 3203 699 215 200 0 chr12 113910905 113911110 -30371379 + MIR SINE MIR 17 262 0 605 254 28 11 chr12 113911544 113911721 -30370768 + MIR SINE MIR 77 256 -6 228 325 25 12 chr12 113911904 113911984 -30370505 + L2 LINE L2 3187 3267 -5 329 338 13 7 chr12 113912102 113912256 -30370233 + MIR3 SINE MIR 41 195 -13 493 313 30 0 chr12 113913080 113913246 -30369243 - MIR SINE MIR -46 216 46 26 64 0 0 chr12 113916855 113916902 -30365587 + GC_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr12 113917051 113917080 -30365409 + GC_rich Low_complexity Low_complexity 1 29 0 200 100 25 0 chr12 113917200 113917240 -30365249 + (CGG)n Simple_repeat Simple_repeat 3 43 0 24 32 0 0 chr12 113917486 113917517 -30364972 + GC_rich Low_complexity Low_complexity 1 31 0 251 279 13 0 chr12 113918795 113918874 -30363615 + MIR SINE MIR 51 130 -132 1127 283 55 16 chr12 113918937 113919304 -30363185 + MLT1I LTR MaLR 27 407 -2 484 269 42 30 chr12 113919399 113919566 -30362923 - MIR SINE MIR -91 171 3 434 259 61 8 chr12 113919769 113919900 -30362589 + MIR SINE MIR 15 152 -110 3627 41 0 32 chr12 113919903 113920366 -30362123 - LTR7 LTR ERV1 -2 448 1 2163 121 0 7 chr12 113920517 113920814 -30361675 - AluSq SINE Alu -18 295 1 1760 141 35 0 chr12 113921046 113921329 -30361160 + L1MA5 LINE L1 5824 6116 -184 229 121 71 61 chr12 113921383 113921482 -30361007 + (TTATA)n Simple_repeat Simple_repeat 4 103 0 1177 92 65 0 chr12 113921482 113921666 -30360823 + L1MA5 LINE L1 6105 6300 0 324 276 128 0 chr12 113921780 113921936 -30360553 - MIR SINE MIR -76 186 11 735 270 147 58 chr12 113922184 113922532 -30359957 + MLT1J2 LTR MaLR 68 450 0 188 324 162 0 chr12 113922758 113922863 -30359626 - L2 LINE L2 0 3272 3151 653 262 39 43 chr12 113923032 113923288 -30359201 + MIR SINE MIR 8 262 0 191 59 0 29 chr12 113923292 113923326 -30359163 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 255 244 42 34 chr12 113924112 113924231 -30358258 + L2 LINE L2 2918 3037 -235 730 181 21 160 chr12 113924394 113924813 -30357676 - Charlie5 DNA MER1_type 0 2624 2264 213 125 42 42 chr12 113924819 113924891 -30357598 + (TTATA)n Simple_repeat Simple_repeat 5 76 0 429 133 0 0 chr12 113924974 113925049 -30357440 + (TGGA)n Simple_repeat Simple_repeat 3 77 0 601 219 136 73 chr12 113925261 113925548 -30356941 + L2 LINE L2 3006 3310 -3 308 283 100 25 chr12 113925560 113925680 -30356809 + MIR SINE MIR 46 174 -88 25 51 0 0 chr12 113925796 113925835 -30356654 + AT_rich Low_complexity Low_complexity 1 39 0 239 276 163 10 chr12 113926434 113926532 -30355957 - L2 LINE L2 0 3272 3160 1517 165 28 11 chr12 113927775 113928060 -30354429 + MER58B DNA MER1_type 37 326 -15 257 159 0 83 chr12 113928348 113928408 -30354081 + MIR SINE MIR 101 154 -62 2140 119 0 19 chr12 113928929 113929239 -30353250 + AluSx SINE Alu 1 304 -8 474 243 133 22 chr12 113929609 113929790 -30352699 + MIR SINE MIR 48 248 -14 249 108 0 0 chr12 113930657 113930694 -30351795 + (CA)n Simple_repeat Simple_repeat 2 38 0 240 348 70 30 chr12 113931533 113931734 -30350755 + L2 LINE L2 3048 3256 -16 390 250 0 69 chr12 113931761 113931877 -30350612 - MARNA DNA Mariner -17 569 462 634 281 81 60 chr12 113931979 113932042 -30350447 - MLT1L LTR MaLR -10 605 545 2351 97 13 0 chr12 113932042 113932350 -30350139 + AluSx SINE Alu 1 312 0 634 281 81 60 chr12 113932350 113932571 -30349918 - MLT1L LTR MaLR -70 545 315 616 245 38 5 chr12 113932871 113933055 -30349434 - MIR SINE MIR -10 252 63 946 229 68 105 chr12 113933281 113933662 -30348827 + MLT1J LTR MaLR 31 394 -117 2370 46 7 14 chr12 113933662 113933975 -30348514 - AluY SINE Alu 0 311 1 946 229 68 105 chr12 113933975 113934059 -30348430 + MLT1J LTR MaLR 394 480 -31 6267 137 40 19 chr12 113934884 113935019 -30347470 - Tigger3b DNA MER2_type -1798 1230 1099 1556 91 22 26 chr12 113935019 113935250 -30347239 + MER30 DNA MER1_type 1 230 0 6267 137 40 19 chr12 113935250 113936200 -30346289 - Tigger3b DNA MER2_type -1929 1099 123 212 244 98 12 chr12 113936232 113936314 -30346175 + L2 LINE L2 2717 2805 -509 247 91 55 109 chr12 113936479 113936534 -30345955 + HSMAR1 DNA Mariner 1 52 -1235 287 301 19 117 chr12 113936549 113936858 -30345631 - MLT1I LTR MaLR -28 381 103 196 30 61 0 chr12 113937408 113937441 -30345048 + (TAA)n Simple_repeat Simple_repeat 2 36 0 224 278 0 14 chr12 113937441 113937513 -30344976 - MIR SINE MIR -8 254 184 1692 166 41 0 chr12 113937525 113937796 -30344693 + AluJo SINE Alu 3 284 -28 578 234 52 31 chr12 113937814 113938006 -30344483 - MIR SINE MIR -65 197 2 1390 173 14 58 chr12 113938160 113938488 -30344001 - AluJo SINE Alu 0 315 1 183 161 143 36 chr12 113938562 113938618 -30343871 - L2 LINE L2 -1 3271 3210 1592 235 84 35 chr12 113938725 113939155 -30343334 + MLT1H LTR MaLR 99 549 0 4389 163 20 33 chr12 113939648 113939871 -30342618 - L1MB3 LINE L1 -30 6153 5929 2783 128 7 14 chr12 113939871 113940308 -30342181 - MER57B LTR ERV1 0 434 1 4389 163 20 33 chr12 113940308 113940931 -30341558 - L1MB3 LINE L1 -254 5929 5318 308 264 121 6 chr12 113940957 113941131 -30341358 - MIR SINE MIR -32 230 37 31062 105 6 14 chr12 113941601 113942471 -30340018 + L1PA8 LINE L1 706 1582 -4905 1997 69 0 8 chr12 113942471 113942716 -30339773 + AluY SINE Alu 66 308 -3 31062 105 6 14 chr12 113942716 113947642 -30334847 + L1PA8 LINE L1 1582 6486 -1 23 33 0 0 chr12 113949008 113949038 -30333451 + AT_rich Low_complexity Low_complexity 1 30 0 810 121 15 23 chr12 113951035 113951167 -30331322 - FLAM_C SINE Alu -2 131 1 1634 177 81 20 chr12 113951171 113951516 -30330973 - L1MD2 LINE L1 -250 6109 5744 2262 123 0 0 chr12 113952282 113952584 -30329905 - AluSq SINE Alu -11 302 1 553 261 153 0 chr12 113954106 113954309 -30328180 - MIR SINE MIR -25 237 4 319 125 28 14 chr12 113954334 113954406 -30328083 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1971 133 94 55 chr12 113954458 113954841 -30327648 - Tigger7 DNA MER2_type -6 2481 2084 287 224 90 0 chr12 113954828 113954895 -30327594 - Tigger7 DNA MER2_type -470 80 8 * 2390 98 0 0 chr12 113954948 113955254 -30327235 - AluSc SINE Alu -3 306 1 434 252 84 14 chr12 113955349 113955492 -30326997 + LTR33 LTR ERVL 21 173 -348 410 319 24 12 chr12 113956896 113957065 -30325424 + MIR3 SINE MIR 30 200 -8 534 246 51 42 chr12 113957744 113957959 -30324530 + MIR SINE MIR 32 248 -14 903 135 0 8 chr12 113958154 113958287 -30324202 + FLAM_C SINE Alu 1 132 -1 318 272 19 10 chr12 113958643 113958746 -30323743 - MIR SINE MIR -118 144 41 2312 111 0 0 chr12 113959021 113959318 -30323171 - AluSx SINE Alu -15 297 1 24 0 0 0 chr12 113959426 113959450 -30323039 + AT_rich Low_complexity Low_complexity 1 24 0 499 291 70 6 chr12 113959893 113960065 -30322424 + MIR SINE MIR 25 207 -55 1792 159 3 3 chr12 113960793 113961089 -30321400 + AluJb SINE Alu 1 296 -16 347 355 39 46 chr12 113961310 113961592 -30320897 - L2 LINE L2 0 3272 2993 403 257 7 42 chr12 113961592 113961736 -30320753 + Charlie8 DNA MER1_type 94 232 -2185 404 285 118 0 chr12 113962301 113962445 -30320044 - MIR SINE MIR -16 246 86 440 276 158 22 chr12 113962828 113963056 -30319433 + L1ME4a LINE L1 5862 6120 -1 228 224 56 168 chr12 113963345 113963373 -30319116 - MIR SINE MIR -12 250 220 3318 143 39 2 chr12 113963373 113963910 -30318579 + MER41D LTR ERV1 1 557 0 228 224 56 168 chr12 113963910 113964024 -30318465 - MIR SINE MIR -42 220 124 392 273 136 59 chr12 113964638 113964858 -30317631 + MIR SINE MIR 20 256 -6 351 213 50 0 chr12 113965093 113965173 -30317316 - MER103 DNA DNA -80 86 3 221 271 71 14 chr12 113965792 113965862 -30316627 + MIR SINE MIR 29 102 -106 781 201 186 10 chr12 113965993 113966192 -30316297 + MIR SINE MIR 29 262 0 306 241 291 7 chr12 113966984 113967125 -30315364 - MIR SINE MIR -68 194 14 311 351 111 34 chr12 113967200 113967346 -30315143 - L2 LINE L2 -1 3271 3138 700 246 49 20 chr12 113967346 113967549 -30314940 - MER3 DNA MER1_type 0 209 1 311 351 111 34 chr12 113967549 113967727 -30314762 - L2 LINE L2 -134 3138 2922 745 264 5 15 chr12 113967769 113967970 -30314519 + MIR SINE MIR 13 211 -51 342 336 35 0 chr12 113968003 113968116 -30314373 - L2 LINE L2 -470 2844 2728 277 275 113 65 chr12 113968117 113968346 -30314143 - Charlie8 DNA MER1_type -2147 270 31 1571 226 9 0 chr12 113969768 113970113 -30312376 + Charlie4a DNA MER1_type 4 351 -157 182 230 27 81 chr12 113970213 113970287 -30312202 - L2 LINE L2 -275 2997 2928 333 308 224 6 chr12 113970756 113970912 -30311577 + MLT1K LTR MaLR 23 212 -376 748 299 117 10 chr12 113970922 113971213 -30311276 + MLT1K LTR MaLR 172 493 -95 1061 227 55 49 chr12 113971342 113971650 -30310839 - MLT1I LTR MaLR -19 390 81 628 247 25 31 chr12 113971744 113971906 -30310583 - MIR3 SINE MIR -31 177 17 297 240 0 107 chr12 113972901 113973022 -30309467 - MIR SINE MIR -43 219 112 293 253 162 0 chr12 113973101 113973200 -30309289 - L2 LINE L2 0 3272 3158 420 291 16 24 chr12 113974389 113974516 -30307973 - MIR SINE MIR -13 249 124 356 276 6 90 chr12 113974530 113974565 -30307924 - MIR3 SINE MIR -21 187 151 317 345 41 6 chr12 113974565 113974736 -30307753 - MER5B DNA MER1_type 0 178 2 356 276 6 90 chr12 113974736 113974856 -30307633 - MIR3 SINE MIR -57 151 45 375 257 181 0 chr12 113975010 113975115 -30307374 - L2 LINE L2 -8 3305 3182 234 158 0 0 chr12 113975739 113975777 -30306712 - U2 snRNA snRNA -149 39 2 449 215 0 0 chr12 113975822 113975901 -30306588 + MER67A LTR ERV1 3 81 -462 650 163 49 23 chr12 113975902 113976073 -30306416 + MER67A LTR ERV1 4 198 -345 306 87 0 0 chr12 113976239 113976285 -30306204 + (CA)n Simple_repeat Simple_repeat 1 46 0 815 197 0 0 chr12 113976815 113976952 -30305537 + MLT1F LTR MaLR 2 138 -404 773 239 43 16 chr12 113977015 113977203 -30305286 + MLT1H1 LTR MaLR 1 193 -362 * 845 259 10 10 chr12 113977198 113977399 -30305090 + MLT1H1 LTR MaLR 355 555 0 767 172 20 20 chr12 113977427 113977578 -30304911 + Charlie4 DNA MER1_type 24 174 -1787 183 186 0 0 chr12 113977642 113977685 -30304804 + (CA)n Simple_repeat Simple_repeat 2 44 0 272 295 105 9 chr12 113978052 113978157 -30304332 - MIR SINE MIR -94 168 54 2004 131 20 0 chr12 113978362 113978660 -30303829 - AluSx SINE Alu -3 309 6 833 246 18 0 chr12 113978848 113979019 -30303470 - MIR SINE MIR -84 178 5 325 300 127 0 chr12 113979006 113979116 -30303373 + L2 LINE L2 3188 3311 -2 * 294 253 0 58 chr12 113979138 113979225 -30303264 + L2 LINE L2 3232 3313 0 566 280 62 44 chr12 113980318 113980543 -30301946 - L2 LINE L2 0 3313 3085 325 141 129 35 chr12 113980557 113980642 -30301847 - L1ME3A LINE L1 0 6170 6078 1841 143 87 39 chr12 113980642 113980793 -30301696 + THE1C LTR MaLR 1 143 -232 7016 44 0 30 chr12 113980793 113982066 -30300423 + L1PA4 LINE L1 4912 6154 -1 1841 143 87 39 chr12 113982066 113982271 -30300218 + THE1C LTR MaLR 143 374 -1 469 250 68 20 chr12 113982365 113982513 -30299976 + MLT1I LTR MaLR 1 155 -254 427 203 104 44 chr12 113982535 113982725 -30299764 + MLT1I LTR MaLR 234 407 -2 312 298 82 3 chr12 113982729 113982862 -30299627 - L2 LINE L2 -240 3032 2892 2227 152 6 14 chr12 113982864 113983226 -30299263 + MLT1A1 LTR MaLR 1 359 -6 1213 254 52 17 chr12 113983229 113983591 -30298898 - LTR16C LTR ERVL 0 491 117 529 317 76 35 chr12 113983688 113984057 -30298432 + L2 LINE L2 2581 2964 -350 615 263 181 42 chr12 113984097 113984545 -30297944 - L2 LINE L2 0 3313 2804 306 242 0 0 chr12 113984746 113984808 -30297681 + MIR SINE MIR 59 120 -142 16970 81 13 1 chr12 113984852 113987920 -30294569 - L1PA7 LINE L1 0 6154 3047 14199 134 19 96 chr12 113987920 113990909 -30291580 - L1P LINE L1 -3384 2762 3 410 371 74 9 chr12 113991004 113991233 -30291256 + MIR SINE MIR 7 250 -12 2259 147 60 60 chr12 113991490 113991993 -30290496 + MLT1D LTR MaLR 3 505 0 2094 98 0 10 chr12 113992029 113992326 -30290163 + AluSg SINE Alu 1 294 -16 2022 113 17 7 chr12 113992336 113992629 -30289860 + AluSq SINE Alu 1 296 -17 299 113 19 0 chr12 113993674 113993727 -30288762 + GA-rich Low_complexity Low_complexity 1 54 0 243 0 0 0 chr12 113993822 113993849 -30288640 + (CA)n Simple_repeat Simple_repeat 1 27 0 517 315 9 0 chr12 113994537 113994723 -30287766 - L1MA10 LINE L1 0 6334 5985 5188 239 109 52 chr12 113994724 113994807 -30287682 - L1MEc LINE L1 -4268 2128 2051 1474 65 0 0 chr12 113994807 113994991 -30287498 - L1PA7 LINE L1 -2 6152 5969 5188 239 109 52 chr12 113994991 113995314 -30287175 - L1MEc LINE L1 -4345 2051 1748 1594 174 50 7 chr12 113995314 113995492 -30286997 - AluJb SINE Alu 0 312 114 200 31 62 0 chr12 113995492 113995524 -30286965 + T-rich Low_complexity Low_complexity 2 35 0 1594 174 50 7 chr12 113995524 113995644 -30286845 - AluJb SINE Alu -198 114 1 5188 239 109 52 chr12 113995644 113996736 -30285753 - L1MEc LINE L1 -4648 1748 484 2062 121 0 0 chr12 113996736 113997041 -30285448 - AluSx SINE Alu 0 307 3 5188 239 109 52 chr12 113997041 113997518 -30284971 - L1MEc LINE L1 -5912 484 36 194 91 30 0 chr12 113997577 113997610 -30284879 + (TA)n Simple_repeat Simple_repeat 1 34 0 685 309 84 64 chr12 113997615 113997742 -30284747 - L2 LINE L2 -13 3259 3136 670 191 34 39 chr12 113997742 113997920 -30284569 - MER104 DNA MER2_type 0 180 4 685 309 84 64 chr12 113997920 113998273 -30284216 - L2 LINE L2 -136 3136 2792 1938 172 14 14 chr12 113998273 113998621 -30283868 - MER7A DNA MER2_type 0 346 1 685 309 84 64 chr12 113998621 113998960 -30283529 - L2 LINE L2 -480 2792 2346 616 317 153 19 chr12 113999699 114000217 -30282272 - L2 LINE L2 -995 2319 1733 198 156 0 0 chr12 114000218 114000263 -30282226 + T-rich Low_complexity Low_complexity 1 45 0 214 165 266 38 chr12 114000384 114000463 -30282026 - L2 LINE L2 -3 3269 3173 * 626 259 98 22 chr12 114000433 114000463 -30282026 + MIR SINE MIR 6 32 -230 2249 92 0 0 chr12 114000463 114000756 -30281733 + AluSx SINE Alu 1 293 -19 626 259 98 22 chr12 114000756 114000949 -30281540 + MIR SINE MIR 32 246 -16 201 189 0 0 chr12 114000917 114000954 -30281535 - MIR SINE MIR 0 262 226 * 390 143 16 0 chr12 114000960 114001023 -30281466 - L1MEc LINE L1 -6294 102 39 604 254 197 24 chr12 114001110 114001323 -30281166 - MIR SINE MIR -11 251 2 203 290 16 16 chr12 114002193 114002255 -30280234 - MIR3 SINE MIR -5 203 142 247 225 9 108 chr12 114002781 114002892 -30279597 - MER102a DNA MER1_type 0 330 231 1485 187 7 10 chr12 114003121 114003410 -30279079 + AluJb SINE Alu 5 292 -20 769 231 79 32 chr12 114003496 114003712 -30278777 - MIR SINE MIR -5 257 32 1849 144 26 7 chr12 114003727 114004033 -30278456 - AluJb SINE Alu 0 312 1 198 346 108 22 chr12 114004134 114004319 -30278170 + MIR SINE MIR 3 203 -59 2157 104 0 0 chr12 114004434 114004732 -30277757 - AluY SINE Alu -7 304 7 499 286 26 48 chr12 114005418 114005607 -30276882 - MIR3 SINE MIR -6 202 18 314 206 65 52 chr12 114006029 114006125 -30276364 + MIR3 SINE MIR 63 159 -49 1340 167 11 15 chr12 114006371 114006634 -30275855 + AluJb SINE Alu 1 262 -50 391 297 61 33 chr12 114007046 114007258 -30275231 - L1ME2 LINE L1 -254 5910 5693 720 293 67 0 chr12 114007333 114007541 -30274948 - MLT1K LTR MaLR -109 479 258 639 247 114 6 chr12 114007591 114007749 -30274740 - MLT1K LTR MaLR -411 177 3 191 383 44 39 chr12 114007759 114007939 -30274550 + L2 LINE L2 3074 3254 -18 556 93 58 0 chr12 114008241 114008327 -30274162 + L1MB7 LINE L1 6089 6179 -5 844 241 66 0 chr12 114008348 114008589 -30273900 + L1ME3 LINE L1 5904 6160 -2 373 95 79 0 chr12 114008672 114008735 -30273754 + MADE1 DNA Mariner 13 80 0 1034 202 5 37 chr12 114008748 114008966 -30273523 + MIR SINE MIR 49 259 -3 277 303 191 17 chr12 114009464 114009642 -30272847 + L2 LINE L2 3060 3268 -4 187 342 188 21 chr12 114009793 114010027 -30272462 - L2 LINE L2 -831 2483 2211 704 186 5 158 chr12 114010284 114010446 -30272043 + MER5A DNA MER1_type 2 123 -66 2332 99 0 10 chr12 114010446 114010760 -30271729 - AluY SINE Alu 0 311 1 704 186 5 158 chr12 114010760 114010818 -30271671 + MER5A DNA MER1_type 123 188 -1 272 222 0 56 chr12 114010820 114010892 -30271597 - MIR3 SINE MIR -49 159 92 3734 124 85 73 chr12 114010893 114012153 -30270336 + pTR5 LTR ERV1 741 2295 -143 209 300 115 50 chr12 114012896 114013219 -30269270 + L2 LINE L2 2540 2883 -431 247 236 169 22 chr12 114013645 114013734 -30268755 - MIR SINE MIR -21 241 140 234 193 0 0 chr12 114013734 114013791 -30268698 + (CACCAT)n Simple_repeat Simple_repeat 4 60 0 197 169 0 1 chr12 114013793 114013824 -30268665 - MIR SINE MIR -102 106 67 237 302 93 0 chr12 114014151 114014237 -30268252 + L2 LINE L2 3178 3271 -1 456 272 141 29 chr12 114014938 114015144 -30267345 + MIR SINE MIR 34 262 0 306 210 16 0 chr12 114015226 114015288 -30267201 + MER5B DNA MER1_type 1 63 -115 2379 94 0 0 chr12 114015289 114015586 -30266903 + AluY SINE Alu 1 297 -14 2066 108 22 0 chr12 114015992 114016269 -30266220 + AluSx SINE Alu 1 283 -29 481 130 0 52 chr12 114017593 114017670 -30264819 - AluS SINE Alu -239 74 2 303 303 74 41 chr12 114017672 114017794 -30264695 - L1M LINE L1 -698 5423 5298 350 370 17 0 chr12 114017801 114017920 -30264569 - L2 LINE L2 -5 3308 3188 26 0 0 0 chr12 114018167 114018193 -30264296 + AT_rich Low_complexity Low_complexity 1 26 0 230 312 32 43 chr12 114018457 114018550 -30263939 - MER5B DNA MER1_type -1 177 86 1896 151 7 13 chr12 114018563 114018862 -30263627 - AluJb SINE Alu -15 297 1 2373 97 0 0 chr12 114018887 114019196 -30263293 - AluSg SINE Alu -1 309 1 220 367 17 25 chr12 114020305 114020425 -30262064 + MIR SINE MIR 32 150 -112 414 0 0 0 chr12 114020808 114020854 -30261635 + (TG)n Simple_repeat Simple_repeat 1 46 0 2133 100 0 4 chr12 114020854 114021135 -30261354 - AluSq SINE Alu -33 280 1 331 294 96 7 chr12 114021145 114021291 -30261198 + L3b LINE CR1 1303 1461 -122 3575 134 15 31 chr12 114021352 114021810 -30260679 + MER6A DNA MER2_type 1 448 -417 2199 125 0 13 chr12 114021810 114022113 -30260376 - AluSx SINE Alu -13 299 1 3575 134 15 31 chr12 114022113 114022266 -30260223 + MER6A DNA MER2_type 448 602 -3 233 294 11 33 chr12 114022766 114022858 -30259631 - L2 LINE L2 -4 3268 3179 183 270 81 14 chr12 114022881 114022955 -30259534 - MIR SINE MIR -1 261 183 942 250 59 69 chr12 114022987 114023280 -30259209 + L2 LINE L2 2860 3149 -164 2052 96 0 96 chr12 114023280 114023612 -30258877 - AluSx SINE Alu -12 300 1 942 250 59 69 chr12 114023612 114023722 -30258767 + L2 LINE L2 3149 3259 -54 324 244 37 0 chr12 114023925 114024007 -30258482 - MIR SINE MIR -48 214 130 2285 99 0 0 chr12 114024806 114025122 -30257367 + AluSg SINE Alu 1 316 0 15951 156 27 16 chr12 114025182 114025451 -30257038 - L1MA2 LINE L1 0 7723 7458 2243 169 67 5 chr12 114025451 114025854 -30256635 + MSTA LTR MaLR 1 428 0 15951 156 27 16 chr12 114025854 114027556 -30254933 - L1MA2 LINE L1 -265 7458 5776 2101 112 3 19 chr12 114027556 114027588 -30254901 - AluSx SINE Alu 0 312 281 199 0 0 61 chr12 114027588 114027621 -30254868 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2101 112 3 19 chr12 114027621 114027900 -30254589 - AluSx SINE Alu -31 281 6 15951 156 27 16 chr12 114027900 114030557 -30251932 - L1MA2 LINE L1 -1947 5776 3030 2870 25 0 0 chr12 114030557 114030875 -30251614 - AluYb8 SINE Alu 0 318 1 15951 156 27 16 chr12 114030875 114031267 -30251222 - L1MA2 LINE L1 -4693 3030 2644 231 225 0 0 chr12 114031870 114031941 -30250548 + (CAT)n Simple_repeat Simple_repeat 2 72 0 1937 120 0 4 chr12 114031950 114032208 -30250281 - AluSx SINE Alu -55 257 1 393 260 169 69 chr12 114033095 114033183 -30249306 - MIR SINE MIR -8 254 176 1528 178 8 16 chr12 114033183 114033441 -30249048 - AluJb SINE Alu -56 256 1 393 260 169 69 chr12 114033441 114033583 -30248906 - MIR SINE MIR -86 176 1 1635 159 96 0 chr12 114033721 114033992 -30248497 - AluJo SINE Alu -15 297 1 29 28 0 0 chr12 114033998 114034034 -30248455 + AT_rich Low_complexity Low_complexity 1 36 0 182 267 53 53 chr12 114034098 114034173 -30248316 - MIR SINE MIR -65 143 69 205 244 0 0 chr12 114035003 114035044 -30247445 + L2 LINE L2 3265 3305 -8 235 298 9 44 chr12 114035113 114035227 -30247262 - L2 LINE L2 -221 3051 2942 308 215 38 13 chr12 114035308 114035387 -30247102 + MIR SINE MIR 50 130 -78 490 234 119 45 chr12 114035398 114035599 -30246890 + MIR SINE MIR 13 228 -34 225 108 0 0 chr12 114036296 114036333 -30246156 + (TCCCC)n Simple_repeat Simple_repeat 4 40 0 208 160 10 110 chr12 114036337 114036437 -30246052 + C-rich Low_complexity Low_complexity 4 93 0 29 78 0 0 chr12 114036691 114036755 -30245734 + GC_rich Low_complexity Low_complexity 1 64 0 231 114 0 0 chr12 114036859 114036903 -30245586 + (CCG)n Simple_repeat Simple_repeat 3 46 0 210 91 0 0 chr12 114036953 114036986 -30245503 + (CGG)n Simple_repeat Simple_repeat 2 34 0 208 320 0 0 chr12 114036989 114037039 -30245450 + polypyrimidine Low_complexity Low_complexity 2 51 0 2314 94 3 10 chr12 114037849 114038148 -30244341 - AluSx SINE Alu -15 297 1 320 256 56 48 chr12 114038256 114038381 -30244108 - MIR SINE MIR -71 191 66 2390 92 0 0 chr12 114038714 114039017 -30243472 + AluSx SINE Alu 1 303 -9 199 286 18 0 chr12 114039375 114039431 -30243058 + L2 LINE L2 3200 3256 -16 251 333 32 32 chr12 114039674 114039767 -30242722 + MIR3 SINE MIR 98 190 -18 1963 148 3 25 chr12 114039789 114040106 -30242383 - AluJo SINE Alu -2 310 1 848 259 83 4 chr12 114040158 114040386 -30242103 - MIR SINE MIR -11 251 6 223 156 0 0 chr12 114040389 114040421 -30242068 + MIR SINE MIR 221 252 -10 465 312 59 32 chr12 114040639 114040867 -30241622 - MIR SINE MIR -9 253 23 339 337 5 26 chr12 114041246 114041454 -30241035 + MIR SINE MIR 5 251 -11 208 364 136 8 chr12 114041473 114041591 -30240898 + L2 LINE L2 3181 3313 0 200 269 0 0 chr12 114041825 114041877 -30240612 - L2 LINE L2 -4 3268 3217 281 316 120 8 chr12 114042072 114042205 -30240284 - MIR3 SINE MIR -13 195 48 1161 220 21 17 chr12 114042323 114042564 -30239925 - MIR SINE MIR -1 261 20 2805 10 0 3 chr12 114042973 114043277 -30239212 + AluYa5 SINE Alu 1 303 -8 212 167 0 0 chr12 114043339 114043375 -30239114 + CT-rich Low_complexity Low_complexity 4 39 0 25 0 0 0 chr12 114043486 114043511 -30238978 + AT_rich Low_complexity Low_complexity 1 25 0 612 209 39 23 chr12 114043511 114043640 -30238849 - FLAM_A SINE Alu -2 131 1 547 237 43 48 chr12 114043665 114043851 -30238638 - L1MC5 LINE L1 -385 7576 7392 201 175 0 0 chr12 114043897 114043937 -30238552 + T-rich Low_complexity Low_complexity 1 40 0 341 271 42 72 chr12 114044027 114044193 -30238296 - MLT1K LTR MaLR -412 176 16 272 102 0 51 chr12 114046582 114046641 -30235848 + (A)n Simple_repeat Simple_repeat 1 56 0 579 250 35 23 chr12 114046952 114047060 -30235429 - MER5B DNA MER1_type -4 174 62 2526 73 0 0 chr12 114047060 114047361 -30235128 - AluY SINE Alu -10 301 1 579 250 35 23 chr12 114047361 114047424 -30235065 - MER5B DNA MER1_type -116 62 1 432 282 141 29 chr12 114047506 114047712 -30234777 - MIR SINE MIR 0 262 34 259 299 81 0 chr12 114048413 114048500 -30233989 - L2 LINE L2 -1 3271 3178 197 211 0 14 chr12 114048819 114048859 -30233630 + MIR SINE MIR 67 106 -102 234 193 0 0 chr12 114048862 114048919 -30233570 + (ATGGTG)n Simple_repeat Simple_repeat 4 60 0 247 236 169 22 chr12 114048919 114049008 -30233481 + MIR SINE MIR 140 241 -21 209 300 115 50 chr12 114049437 114049760 -30232729 - L2 LINE L2 -431 2883 2540 3683 128 85 73 chr12 114050503 114051763 -30230726 - pTR5 LTR ERV1 -143 2295 741 271 222 0 56 chr12 114051764 114051836 -30230653 + MIR3 SINE MIR 92 159 -49 708 175 24 137 chr12 114051838 114051896 -30230593 - MER5A DNA MER1_type -1 188 125 2276 103 0 10 chr12 114051896 114052206 -30230283 + AluY SINE Alu 1 307 -4 708 175 24 137 chr12 114052206 114052358 -30230131 - MER5A DNA MER1_type -64 125 2 187 346 188 21 chr12 114052615 114052849 -30229640 + L2 LINE L2 2211 2483 -831 281 303 191 17 chr12 114053000 114053178 -30229311 - L2 LINE L2 -4 3268 3060 186 340 111 44 chr12 114053159 114053474 -30229015 + L2 LINE L2 2620 2955 -359 * 1029 202 5 37 chr12 114053676 114053894 -30228595 - MIR SINE MIR -3 259 49 354 95 79 0 chr12 114053907 114053970 -30228519 - MADE1 DNA Mariner 0 80 13 772 249 66 0 chr12 114054053 114054294 -30228195 - L1ME3 LINE L1 -2 6160 5904 549 93 58 0 chr12 114054315 114054401 -30228088 - L1MB7 LINE L1 -5 6179 6089 201 383 44 39 chr12 114054703 114054883 -30227606 - L2 LINE L2 -18 3254 3074 594 241 114 6 chr12 114054893 114055051 -30227438 + MLT1K LTR MaLR 3 177 -411 674 293 67 0 chr12 114055101 114055309 -30227180 + MLT1K LTR MaLR 258 479 -109 403 313 81 29 chr12 114055384 114055630 -30226859 + L1ME2 LINE L1 5693 5951 -213 322 305 39 39 chr12 114055812 114055940 -30226549 - L1MC4 LINE L1 -27 8015 7888 1482 164 11 15 chr12 114056008 114056271 -30226218 - AluJb SINE Alu -50 262 1 309 214 78 46 chr12 114056495 114056613 -30225876 - MIR3 SINE MIR -23 185 63 511 286 26 48 chr12 114057035 114057224 -30225265 + MIR3 SINE MIR 18 202 -6 2303 104 0 0 chr12 114057910 114058208 -30224281 + AluY SINE Alu 7 304 -7 205 346 108 22 chr12 114058323 114058508 -30223981 - MIR SINE MIR -59 203 3 2002 144 26 7 chr12 114058609 114058915 -30223574 + AluJb SINE Alu 1 312 0 768 231 79 32 chr12 114058930 114059146 -30223343 + MIR SINE MIR 32 257 -5 1625 187 7 10 chr12 114059232 114059521 -30222968 - AluJb SINE Alu -20 292 5 203 339 0 0 chr12 114060387 114060449 -30222040 + MIR3 SINE MIR 142 203 -5 602 254 197 24 chr12 114061319 114061532 -30220957 + MIR SINE MIR 2 251 -11 391 143 16 0 chr12 114061619 114061682 -30220807 + L1MEc LINE L1 39 102 -6294 630 265 96 22 chr12 114061687 114061886 -30220603 - MIR SINE MIR -10 252 32 2395 92 0 0 chr12 114061886 114062179 -30220310 - AluSx SINE Alu -19 293 1 213 165 266 38 chr12 114062179 114062258 -30220231 + L2 LINE L2 3173 3269 -3 198 156 0 0 chr12 114062379 114062424 -30220065 + A-rich Low_complexity Low_complexity 1 45 0 424 320 153 19 chr12 114062425 114062943 -30219546 + L2 LINE L2 1733 2319 -995 530 334 103 14 chr12 114063682 114064021 -30218468 + L2 LINE L2 2346 2720 -594 1948 172 14 14 chr12 114064021 114064369 -30218120 + MER7A DNA MER2_type 1 346 0 530 334 103 14 chr12 114064369 114064388 -30218101 + L2 LINE L2 2720 2736 -578 549 292 54 105 chr12 114064460 114064722 -30217767 + L2 LINE L2 2890 3127 -145 680 191 34 39 chr12 114064722 114064900 -30217589 + MER104 DNA MER2_type 4 180 0 549 292 54 105 chr12 114064900 114065027 -30217462 + L2 LINE L2 3127 3259 -13 194 91 30 0 chr12 114065032 114065065 -30217424 + (TA)n Simple_repeat Simple_repeat 1 34 0 5252 237 109 51 chr12 114065124 114065601 -30216888 + L1MEc LINE L1 36 484 -5912 2187 121 0 0 chr12 114065601 114065906 -30216583 + AluSx SINE Alu 3 307 0 5252 237 109 51 chr12 114065906 114066998 -30215491 + L1MEc LINE L1 484 1512 -4884 1705 174 50 7 chr12 114066998 114067118 -30215371 + AluJb SINE Alu 1 114 -198 233 0 62 0 chr12 114067118 114067150 -30215339 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1705 174 50 7 chr12 114067150 114067328 -30215161 + AluJb SINE Alu 114 312 0 5252 237 109 51 chr12 114067328 114067651 -30214838 + L1MEc LINE L1 1512 1815 -4581 1468 65 0 0 chr12 114067651 114067835 -30214654 + L1PA7 LINE L1 5969 6152 -2 5252 237 109 51 chr12 114067835 114067918 -30214571 + L1MEc LINE L1 1815 2128 -4268 514 315 9 0 chr12 114067919 114068105 -30214384 + L1MA10 LINE L1 5985 6334 0 297 0 0 0 chr12 114068791 114068824 -30213665 + (TG)n Simple_repeat Simple_repeat 1 33 0 245 151 19 0 chr12 114068915 114068968 -30213521 + CT-rich Low_complexity Low_complexity 1 54 0 2162 109 17 7 chr12 114070013 114070306 -30212183 - AluSq SINE Alu -17 296 1 2221 98 0 10 chr12 114070316 114070613 -30211876 - AluSg SINE Alu -16 294 1 2231 149 60 60 chr12 114070649 114071152 -30211337 - MLT1D LTR MaLR 0 505 3 319 361 84 7 chr12 114071483 114071638 -30210851 - MIR SINE MIR -89 173 7 33417 105 12 45 chr12 114071733 114078124 -30204365 + L1PA8 LINE L1 3 6171 -1 23 33 0 0 chr12 114079491 114079521 -30202968 + AT_rich Low_complexity Low_complexity 1 30 0 810 121 15 23 chr12 114081520 114081652 -30200837 - FLAM_C SINE Alu -2 131 1 1634 177 81 20 chr12 114081656 114082001 -30200488 - L1MD2 LINE L1 -250 6109 5744 2247 126 0 0 chr12 114082767 114083069 -30199420 - AluSq SINE Alu -11 302 1 553 261 153 0 chr12 114084591 114084794 -30197695 - MIR SINE MIR -25 237 4 319 125 28 14 chr12 114084819 114084891 -30197598 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1971 133 94 55 chr12 114084943 114085326 -30197163 - Tigger7 DNA MER2_type -6 2481 2084 287 224 90 0 chr12 114085313 114085380 -30197109 - Tigger7 DNA MER2_type -470 80 8 * 2390 98 0 0 chr12 114085433 114085739 -30196750 - AluSc SINE Alu -3 306 1 434 252 84 14 chr12 114085834 114085977 -30196512 + LTR33 LTR ERVL 21 173 -348 389 325 24 12 chr12 114087380 114087549 -30194940 + MIR3 SINE MIR 30 200 -8 534 246 51 42 chr12 114088228 114088443 -30194046 + MIR SINE MIR 32 248 -14 903 135 0 8 chr12 114088638 114088771 -30193718 + FLAM_C SINE Alu 1 132 -1 318 272 19 10 chr12 114089127 114089230 -30193259 - MIR SINE MIR -118 144 41 2312 111 0 0 chr12 114089505 114089802 -30192687 - AluSx SINE Alu -15 297 1 24 0 0 0 chr12 114089910 114089934 -30192555 + AT_rich Low_complexity Low_complexity 1 24 0 430 291 70 6 chr12 114090377 114090549 -30191940 + MIR SINE MIR 25 207 -55 1996 112 6 26 chr12 114091150 114091462 -30191027 - AluSx SINE Alu -5 307 2 808 240 28 43 chr12 114091496 114091566 -30190923 - MIR SINE MIR -2 260 190 629 65 21 0 chr12 114091566 114091659 -30190830 - L1PB1 LINE L1 -1 6150 6056 808 240 28 43 chr12 114091659 114091842 -30190647 - MIR SINE MIR -72 190 11 348 241 116 21 chr12 114092339 114092477 -30190012 + MIR SINE MIR 37 189 -73 1883 241 102 24 chr12 114092477 114093187 -30189302 + L2 LINE L2 2362 3123 -190 361 247 13 0 chr12 114093505 114093655 -30188834 + (ATG)n Simple_repeat Simple_repeat 2 153 0 449 299 116 27 chr12 114093737 114093961 -30188528 - MIR SINE MIR -10 252 9 566 0 29 0 chr12 114094582 114094651 -30187838 + (TGGA)n Simple_repeat Simple_repeat 3 73 0 1448 147 27 77 chr12 114094653 114094952 -30187537 - MLT1B LTR MaLR 0 390 107 197 265 102 72 chr12 114095109 114095275 -30187214 + L2 LINE L2 3124 3294 -19 522 108 0 0 chr12 114095275 114095358 -30187131 + (TGGA)n Simple_repeat Simple_repeat 3 85 0 517 160 53 0 chr12 114095362 114095456 -30187033 - MLT1B LTR MaLR -290 100 2 16751 149 26 52 chr12 114095508 114097395 -30185094 + L1MA2 LINE L1 16 1950 -5773 2378 84 10 0 chr12 114097395 114097693 -30184796 - AluSp SINE Alu -12 301 1 16751 149 26 52 chr12 114097693 114098665 -30183824 + L1MA2 LINE L1 1950 2945 -4778 2858 25 0 0 chr12 114098665 114098983 -30183506 + AluYb8 SINE Alu 1 318 0 16751 149 26 52 chr12 114098983 114101640 -30180849 + L1MA2 LINE L1 2945 5669 -2054 2076 97 4 7 chr12 114101640 114101952 -30180537 + AluSx SINE Alu 6 316 0 16751 149 26 52 chr12 114101952 114103688 -30178801 + L1MA2 LINE L1 5669 7451 -272 2195 169 67 5 chr12 114103688 114104091 -30178398 - MSTA LTR MaLR 0 428 1 16751 149 26 52 chr12 114104091 114104358 -30178131 + L1MA2 LINE L1 7451 7723 0 2196 117 3 3 chr12 114104426 114104734 -30177755 - AluSg SINE Alu -2 308 1 280 244 37 0 chr12 114105532 114105614 -30176875 + MIR SINE MIR 130 214 -48 790 250 59 69 chr12 114105817 114105927 -30176562 - L2 LINE L2 -54 3259 3149 2029 96 0 96 chr12 114105927 114106259 -30176230 + AluSx SINE Alu 1 300 -12 790 250 59 69 chr12 114106259 114106552 -30175937 - L2 LINE L2 -164 3149 2860 21 36 0 0 chr12 114106581 114106609 -30175880 + AT_rich Low_complexity Low_complexity 1 28 0 195 294 11 33 chr12 114106681 114106773 -30175716 + L2 LINE L2 3179 3268 -4 3545 136 15 31 chr12 114107273 114107426 -30175063 - MER6A DNA MER2_type -263 602 448 2175 125 0 13 chr12 114107426 114107729 -30174760 + AluSx SINE Alu 1 299 -13 3545 136 15 31 chr12 114107729 114108187 -30174302 - MER6A DNA MER2_type -417 448 1 271 294 96 7 chr12 114108248 114108394 -30174095 - L3b LINE CR1 -122 1461 1303 2122 100 0 4 chr12 114108404 114108685 -30173804 + AluSq SINE Alu 1 280 -33 378 0 0 0 chr12 114108685 114108727 -30173762 + (CA)n Simple_repeat Simple_repeat 1 42 0 358 138 0 0 chr12 114110305 114110363 -30172126 + Alu SINE Alu 245 302 0 24 0 0 0 chr12 114110363 114110387 -30172102 + AT_rich Low_complexity Low_complexity 1 24 0 1947 153 0 13 chr12 114110397 114110698 -30171791 + AluJb SINE Alu 1 297 -15 194 312 32 43 chr12 114110711 114110804 -30171685 + MER5B DNA MER1_type 86 177 -1 26 0 0 0 chr12 114111068 114111094 -30171395 + AT_rich Low_complexity Low_complexity 1 26 0 317 370 17 0 chr12 114111341 114111460 -30171029 + L2 LINE L2 3188 3308 -5 1560 163 10 33 chr12 114111588 114111888 -30170601 + AluSx SINE Alu 1 293 -19 353 155 28 0 chr12 114111888 114111959 -30170530 + GA-rich Low_complexity Low_complexity 1 73 0 826 186 14 0 chr12 114112030 114112175 -30170314 + FRAM SINE Alu 21 167 -9 397 197 17 92 chr12 114112704 114112947 -30169542 - MER63 DNA MER1_type -3 1059 10 307 293 48 18 chr12 114113697 114113928 -30168561 + L1ME4a LINE L1 5576 5820 -301 343 258 0 31 chr12 114114055 114114152 -30168337 + L1ME4a LINE L1 5970 6063 -58 763 218 39 79 chr12 114114193 114114270 -30168219 - MIR SINE MIR -14 248 170 959 202 0 0 chr12 114114270 114114443 -30168046 + FAM SINE Alu 1 173 -2 763 218 39 79 chr12 114114443 114114594 -30167895 - MIR SINE MIR -92 170 29 5434 113 30 53 chr12 114114862 114115773 -30166716 + MER4D LTR ERV1 16 903 0 3481 180 140 20 chr12 114116862 114117728 -30164761 - LTR28 LTR ERV1 0 1020 1 207 0 0 0 chr12 114117996 114118019 -30164470 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 187 337 30 10 chr12 114118245 114118346 -30164143 - MIR SINE MIR -8 254 152 269 235 0 0 chr12 114118379 114118447 -30164042 - L1ME1 LINE L1 -222 5944 5877 262 281 0 9 chr12 114118458 114118548 -30163941 - MIR SINE MIR -102 106 19 3330 230 39 20 chr12 114118833 114119663 -30162826 + L1ME1 LINE L1 5318 6162 -4 342 0 0 0 chr12 114119667 114119705 -30162784 + (CA)n Simple_repeat Simple_repeat 2 39 0 1627 182 98 9 chr12 114119705 114120040 -30162449 + MLT1A1 LTR MaLR 1 365 0 270 0 0 0 chr12 114120043 114120073 -30162416 + (CA)n Simple_repeat Simple_repeat 2 31 0 259 361 107 17 chr12 114120505 114120804 -30161685 + L2 LINE L2 2636 2961 -353 333 146 18 0 chr12 114120810 114120865 -30161624 - U7 snRNA snRNA -6 57 2 307 313 18 119 chr12 114120867 114121202 -30161287 + L2 LINE L2 2939 3239 -33 2393 82 7 10 chr12 114121379 114121685 -30160804 - AluSp SINE Alu -8 305 1 595 184 77 51 chr12 114121986 114122182 -30160307 - L2 LINE L2 0 3313 3113 307 227 114 0 chr12 114122273 114122361 -30160128 + MLT1L LTR MaLR 514 611 -4 1140 266 194 15 chr12 114122677 114123311 -30159178 + L2 LINE L2 2566 3313 0 458 134 51 13 chr12 114123472 114123629 -30158860 + (TA)n Simple_repeat Simple_repeat 1 163 0 2258 98 0 10 chr12 114124427 114124724 -30157765 - AluSg SINE Alu -16 294 1 2071 133 10 0 chr12 114124872 114125166 -30157323 + AluSq SINE Alu 1 297 -16 3357 156 22 2 chr12 114126143 114126680 -30155809 - MER44D DNA MER2_type -2 603 1 1035 263 75 62 chr12 114126685 114127221 -30155268 + MLT1H1 LTR MaLR 10 552 -3 202 254 15 0 chr12 114127281 114127348 -30155141 - L2 LINE L2 -530 2784 2717 1898 138 10 10 chr12 114127589 114127885 -30154604 - AluSx SINE Alu -16 296 1 249 361 128 8 chr12 114128141 114128274 -30154215 - L2 LINE L2 -1 3271 3123 1690 169 43 4 chr12 114128329 114128448 -30154041 + AluJo SINE Alu 3 116 -196 207 0 0 0 chr12 114128448 114128471 -30154018 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1690 169 43 4 chr12 114128471 114128630 -30153859 + AluJo SINE Alu 116 292 -20 245 214 184 87 chr12 114128664 114128767 -30153722 - MLT1J2 LTR MaLR -300 150 38 322 344 19 13 chr12 114128794 114128948 -30153541 - MIR SINE MIR -56 206 52 1817 133 37 114 chr12 114129074 114129451 -30153038 + Tigger3(Golem) DNA MER2_type 1 3028 -1 2169 97 0 10 chr12 114129973 114130297 -30152192 + AluSx SINE Alu 1 321 0 867 197 40 55 chr12 114131555 114131829 -30150660 - LTR37B LTR ERV1 0 468 199 1569 192 14 7 chr12 114131914 114132200 -30150289 - AluJo SINE Alu -24 288 1 414 262 49 43 chr12 114132249 114132413 -30150076 - LTR37B LTR ERV1 -295 173 9 22 35 0 0 chr12 114133579 114133608 -30148881 + AT_rich Low_complexity Low_complexity 1 29 0 2234 112 0 3 chr12 114133621 114133916 -30148573 - AluSx SINE Alu -18 294 1 2204 125 7 3 chr12 114134507 114134812 -30147677 + AluSx SINE Alu 1 306 -6 252 115 211 0 chr12 114136156 114136208 -30146281 - L1MC1 LINE L1 0 6333 6271 23 33 0 0 chr12 114136380 114136410 -30146079 + AT_rich Low_complexity Low_complexity 1 30 0 2259 110 0 3 chr12 114136410 114136701 -30145788 - AluSx SINE Alu -22 290 1 2040 130 10 3 chr12 114136702 114136994 -30145495 - AluSq SINE Alu -19 294 1 940 192 6 28 chr12 114137310 114137492 -30144997 - MER45A DNA AcHobo 0 178 1 2251 82 0 7 chr12 114138207 114138508 -30143981 - AluSg SINE Alu 0 299 1 400 228 54 15 chr12 114139218 114139389 -30143100 - MIR SINE MIR -3 259 40 404 167 47 47 chr12 114140188 114140338 -30142151 + C-rich Low_complexity Low_complexity 2 151 0 385 241 14 21 chr12 114141625 114141770 -30140719 - MER113 DNA MER1_type? -372 149 6 622 245 38 81 chr12 114142955 114143216 -30139273 + MIR SINE MIR 13 262 0 192 276 149 0 chr12 114143299 114143386 -30139103 - L2 LINE L2 -46 3226 3127 428 357 18 13 chr12 114143582 114143809 -30138680 - L2 LINE L2 -259 3054 2827 832 214 212 57 chr12 114144109 114144529 -30137960 - L1MC4 LINE L1 -1 8041 7557 449 279 188 14 chr12 114144556 114144764 -30137725 - MIR SINE MIR 0 262 19 361 284 67 0 chr12 114145709 114145843 -30136646 - MIR SINE MIR 0 262 120 200 328 0 0 chr12 114146184 114146251 -30136238 - MIR SINE MIR -110 98 32 194 250 100 0 chr12 114146901 114146961 -30135528 - L2 LINE L2 -186 3086 3021 194 276 171 9 chr12 114147608 114147713 -30134776 + L2 LINE L2 3150 3271 -1 233 248 175 15 chr12 114148410 114148547 -30133942 - MIR SINE MIR -40 222 64 343 267 126 56 chr12 114149988 114150258 -30132231 - L1ME4a LINE L1 -236 5885 5597 2294 111 3 0 chr12 114150474 114150771 -30131718 + AluSx SINE Alu 1 298 -14 2076 105 22 0 chr12 114151176 114151493 -30130996 + AluSx SINE Alu 1 323 0 2468 63 7 3 chr12 114151637 114151937 -30130552 - AluY SINE Alu -10 301 1 378 0 0 0 chr12 114152407 114152449 -30130040 + (TG)n Simple_repeat Simple_repeat 1 42 0 312 48 0 0 chr12 114152448 114152490 -30129999 + (GA)n Simple_repeat Simple_repeat 1 42 0 * 1766 164 3 23 chr12 114152590 114152895 -30129594 + AluJo SINE Alu 2 300 -12 1539 115 17 4 chr12 114152900 114153134 -30129355 + AluSq SINE Alu 77 313 0 513 314 7 84 chr12 114153166 114153440 -30129049 + L2 LINE L2 3006 3258 -14 814 309 83 28 chr12 114153997 114154719 -30127770 + L2 LINE L2 2548 3313 0 2285 103 0 0 chr12 114155108 114155399 -30127090 + AluSx SINE Alu 1 291 -21 238 323 0 0 chr12 114155422 114155484 -30127005 - L2 LINE L2 0 3272 3211 249 186 29 0 chr12 114156107 114156177 -30126312 + L1ME4a LINE L1 6048 6119 -2 1309 195 0 0 chr12 114156370 114156585 -30125904 - MLT1A1 LTR MaLR -1 364 150 1245 114 0 0 chr12 114156585 114156752 -30125737 - AluSg/x SINE Alu -12 300 134 2634 30 0 7 chr12 114156752 114157086 -30125403 - AluYb8 SINE Alu 0 318 1 948 142 6 43 chr12 114157086 114157248 -30125241 - MLT1A1 LTR MaLR -209 156 1 265 318 189 0 chr12 114157502 114157719 -30124770 - MIR SINE MIR 0 262 5 5114 147 29 18 chr12 114157918 114157993 -30124496 + MER6 DNA MER2_type 1 74 -791 2233 110 7 3 chr12 114157993 114158301 -30124188 + AluSc SINE Alu 1 309 0 5114 147 29 18 chr12 114158301 114159080 -30123409 + MER6 DNA MER2_type 74 865 0 237 345 84 21 chr12 114159783 114159925 -30122564 - L2 LINE L2 -45 3227 3077 738 207 144 118 chr12 114159961 114160296 -30122193 - MLT1J2 LTR MaLR -2 448 66 1535 155 8 12 chr12 114161423 114161681 -30120808 + AluSx SINE Alu 1 257 -55 231 225 0 0 chr12 114161690 114161761 -30120728 + (ATG)n Simple_repeat Simple_repeat 2 72 0 2116 124 3 7 chr12 114162226 114162533 -30119956 - AluSx SINE Alu -5 307 2 291 234 18 54 chr12 114162567 114162637 -30119852 - MIR SINE MIR -2 260 194 629 65 21 0 chr12 114162637 114162730 -30119759 - L1PB1 LINE L1 -1 6150 6056 291 234 18 54 chr12 114162730 114162770 -30119719 - MIR SINE MIR -68 194 154 39 95 0 0 chr12 114162851 114162967 -30119522 + GC_rich Low_complexity Low_complexity 1 116 0 22 35 0 0 chr12 114163212 114163241 -30119248 + GC_rich Low_complexity Low_complexity 1 29 0 206 254 16 15 chr12 114163299 114163377 -30119112 + C-rich Low_complexity Low_complexity 2 127 0 23 33 0 0 chr12 114163636 114163666 -30118823 + GC_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr12 114164622 114164652 -30117837 + GC_rich Low_complexity Low_complexity 1 30 0 368 353 111 22 chr12 114165290 114165658 -30116831 - L2 LINE L2 -440 2874 2474 639 263 125 13 chr12 114165780 114166004 -30116485 + MIR SINE MIR 11 259 -3 426 102 0 0 chr12 114166040 114166099 -30116390 + Alu SINE Alu 1 59 -259 2052 115 0 26 chr12 114167094 114167406 -30115083 + AluSx SINE Alu 1 304 -8 391 255 88 10 chr12 114167407 114167509 -30114980 + L1ME LINE L1 5523 5632 -532 3234 127 25 43 chr12 114167521 114168175 -30114314 - L1PA4 LINE L1 -3 6152 5511 32 0 0 0 chr12 114168299 114168331 -30114158 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 114168413 114168434 -30114055 + AT_rich Low_complexity Low_complexity 1 21 0 227 79 26 0 chr12 114169313 114169351 -30113138 + (TA)n Simple_repeat Simple_repeat 2 40 0 2275 126 0 0 chr12 114170278 114170588 -30111901 + AluSp SINE Alu 1 310 -3 215 217 253 12 chr12 114171055 114171138 -30111351 + MIR3 SINE MIR 100 202 -6 1996 232 28 34 chr12 114171268 114171672 -30110817 + MLT1F1 LTR MaLR 3 405 -162 1016 189 6 6 chr12 114171672 114171847 -30110642 - FAM SINE Alu 0 175 1 1996 232 28 34 chr12 114171847 114171942 -30110547 + MLT1F1 LTR MaLR 405 499 -68 271 151 132 0 chr12 114172403 114172456 -30110033 + MER46A DNA MER2_type 1 60 -176 2044 154 6 3 chr12 114172494 114172805 -30109684 - AluSx SINE Alu 0 312 1 936 222 0 12 chr12 114172827 114172994 -30109495 - FAM SINE Alu -10 165 1 1168 153 0 45 chr12 114172995 114173197 -30109292 + MER46A DNA MER2_type 44 236 0 2300 104 0 0 chr12 114174126 114174424 -30108065 + AluSc SINE Alu 1 298 -11 377 282 122 27 chr12 114174866 114175054 -30107435 - MIR SINE MIR -36 226 21 463 271 140 37 chr12 114175230 114175558 -30106931 + L1ME4a LINE L1 5559 5920 -201 2420 81 0 0 chr12 114175818 114176116 -30106373 - AluY SINE Alu -12 299 2 21 0 0 0 chr12 114176232 114176253 -30106236 + AT_rich Low_complexity Low_complexity 1 21 0 2194 110 10 0 chr12 114176379 114176678 -30105811 - AluSx SINE Alu -10 302 1 3306 195 21 42 chr12 114177423 114177620 -30104869 + MER82 DNA MER2_type 1 201 -452 1994 120 14 0 chr12 114177620 114177911 -30104578 + AluSg SINE Alu 1 295 -15 3306 195 21 42 chr12 114177911 114178379 -30104110 + MER82 DNA MER2_type 201 652 -1 9582 123 50 22 chr12 114178505 114178734 -30103755 + Tigger1 DNA MER2_type 1 222 -2196 2422 100 7 0 chr12 114178734 114179044 -30103445 - AluSx SINE Alu 0 312 1 9582 123 50 22 chr12 114179044 114180363 -30102126 + Tigger1 DNA MER2_type 222 1593 -825 845 144 7 14 chr12 114180363 114180502 -30101987 + MER41A-int LTR ERV1 5807 5944 -2 3125 86 18 59 chr12 114180505 114180993 -30101496 + MER41A LTR ERV1 1 468 -86 5260 122 14 63 chr12 114181010 114181892 -30100597 + Tigger1 DNA MER2_type 1581 2418 0 1018 187 0 0 chr12 114181977 114182143 -30100346 - AluJb SINE Alu -14 298 133 1596 193 0 29 chr12 114182144 114182450 -30100039 - AluJb SINE Alu -15 297 1 338 286 106 53 chr12 114183272 114183461 -30099028 - MIR SINE MIR -34 228 30 330 273 229 29 chr12 114183461 114183666 -30098823 + MIR SINE MIR 5 250 -12 22 0 0 0 chr12 114184072 114184094 -30098395 + AT_rich Low_complexity Low_complexity 1 22 0 1516 194 26 0 chr12 114184620 114184925 -30097564 - AluJo SINE Alu 0 316 5 22 56 0 0 chr12 114185551 114185587 -30096902 + AT_rich Low_complexity Low_complexity 1 36 0 1664 179 53 0 chr12 114185839 114186124 -30096365 + AluJb SINE Alu 1 300 -12 1932 138 44 3 chr12 114186596 114186892 -30095597 + AluSx SINE Alu 1 308 -4 733 293 49 56 chr12 114187059 114187862 -30094627 + L1MEc LINE L1 895 1731 -4579 2266 91 0 14 chr12 114187926 114188223 -30094266 + AluSc SINE Alu 1 293 -16 1873 141 7 20 chr12 114188235 114188541 -30093948 + AluJb SINE Alu 11 312 0 2298 96 3 0 chr12 114188976 114189269 -30093220 - AluSx SINE Alu -18 294 1 321 26 0 0 chr12 114190318 114190356 -30092133 + (TG)n Simple_repeat Simple_repeat 1 38 0 342 0 0 0 chr12 114190586 114190624 -30091865 + (CA)n Simple_repeat Simple_repeat 2 39 0 286 105 0 0 chr12 114191809 114191847 -30090642 - MSTA LTR MaLR 0 428 391 1208 169 24 10 chr12 114191849 114192056 -30090433 + AluJb SINE Alu 84 293 -19 2270 127 53 13 chr12 114192056 114192435 -30090054 - MSTA LTR MaLR -34 394 1 2103 85 37 4 chr12 114192515 114192787 -30089702 + AluSx SINE Alu 1 281 -31 212 357 69 79 chr12 114193281 114193558 -30088931 - L2 LINE L2 -42 3230 2957 1691 154 30 37 chr12 114193628 114193755 -30088734 + AluJo SINE Alu 1 127 -185 240 35 0 0 chr12 114193755 114193784 -30088705 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1691 154 30 37 chr12 114193784 114193954 -30088535 + AluJo SINE Alu 127 296 -16 311 218 11 23 chr12 114194012 114194099 -30088390 - L1MC5 LINE L1 -44 7917 7832 541 163 33 85 chr12 114194169 114194322 -30088167 - L1ME2 LINE L1 -108 6056 5912 1125 182 97 77 chr12 114194337 114194677 -30087812 - L1ME2 LINE L1 -194 5970 5624 44933 34 8 2 chr12 114194680 114200394 -30082095 + L1P2 LINE L1 6 5758 -397 880 306 25 2 chr12 114200572 114200980 -30081509 - L1MEd LINE L1 -3437 2692 2276 2312 112 0 0 chr12 114201017 114201311 -30081178 + AluSx SINE Alu 1 294 -18 1873 141 7 20 chr12 114201746 114202052 -30080437 - AluJb SINE Alu 0 312 11 2266 91 0 14 chr12 114202064 114202361 -30080128 - AluSc SINE Alu -16 293 1 733 289 44 56 chr12 114202425 114203228 -30079261 - L1MEd LINE L1 -4573 1556 895 1932 138 44 3 chr12 114203395 114203691 -30078798 - AluSx SINE Alu -4 308 1 1664 179 53 0 chr12 114204163 114204448 -30078041 - AluJb SINE Alu -12 300 1 22 56 0 0 chr12 114204700 114204736 -30077753 + AT_rich Low_complexity Low_complexity 1 36 0 1517 194 26 0 chr12 114205362 114205667 -30076822 + AluJo SINE Alu 5 316 0 22 0 0 0 chr12 114206193 114206215 -30076274 + AT_rich Low_complexity Low_complexity 1 22 0 330 273 229 29 chr12 114206621 114206826 -30075663 - MIR SINE MIR -12 250 5 312 291 106 53 chr12 114206826 114207015 -30075474 + MIR SINE MIR 30 228 -34 1411 209 0 29 chr12 114207837 114208143 -30074346 + AluJb SINE Alu 1 297 -15 952 199 0 0 chr12 114208144 114208310 -30074179 + AluJb SINE Alu 133 298 -14 5260 122 14 63 chr12 114208395 114209277 -30073212 - Tigger1 DNA MER2_type 0 2418 1581 3207 88 14 57 chr12 114209294 114209783 -30072706 - MER41A LTR ERV1 -86 468 1 995 117 7 0 chr12 114209786 114209923 -30072566 - MER41A-int LTR ERV1 -2 5944 5807 9784 121 48 21 chr12 114209923 114211243 -30071246 - Tigger1 DNA MER2_type -825 1593 222 2422 100 7 0 chr12 114211243 114211553 -30070936 + AluSx SINE Alu 1 312 0 9784 121 48 21 chr12 114211553 114211782 -30070707 - Tigger1 DNA MER2_type -2196 222 1 3306 195 21 42 chr12 114211908 114212376 -30070113 - MER82 DNA MER2_type -1 652 201 1994 120 14 0 chr12 114212376 114212667 -30069822 - AluSg SINE Alu -15 295 1 3306 195 21 42 chr12 114212667 114212864 -30069625 - MER82 DNA MER2_type -452 201 1 2334 90 10 0 chr12 114213609 114213908 -30068581 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr12 114214035 114214056 -30068433 + AT_rich Low_complexity Low_complexity 1 21 0 2429 80 0 0 chr12 114214172 114214471 -30068018 + AluY SINE Alu 2 300 -11 463 271 140 37 chr12 114214730 114215058 -30067431 - L1ME4a LINE L1 -201 5920 5559 377 282 122 27 chr12 114215234 114215422 -30067067 + MIR SINE MIR 21 226 -36 2560 52 3 0 chr12 114215864 114216169 -30066320 - AluYb8 SINE Alu -12 306 1 951 142 6 43 chr12 114216169 114216331 -30066158 - MLT1A1 LTR MaLR -209 156 1 323 318 189 0 chr12 114216586 114216803 -30065686 - MIR SINE MIR 0 262 5 5504 146 27 18 chr12 114217002 114217077 -30065412 + MER6 DNA MER2_type 1 74 -791 2191 114 7 3 chr12 114217077 114217385 -30065104 + AluSc SINE Alu 1 309 0 5504 146 27 18 chr12 114217385 114218166 -30064323 + MER6 DNA MER2_type 74 865 0 311 337 96 28 chr12 114218869 114219047 -30063442 - L2 LINE L2 -45 3227 3038 709 206 122 103 chr12 114219047 114219382 -30063107 - MLT1J2 LTR MaLR -2 448 66 608 270 61 26 chr12 114219876 114220118 -30062371 - MIR SINE MIR -12 250 3 366 67 40 13 chr12 114220672 114220747 -30061742 + (TTAAA)n Simple_repeat Simple_repeat 1 77 0 2239 288 54 10 chr12 114220923 114222001 -30060488 - L2 LINE L2 -1 3312 2190 733 218 107 20 chr12 114222033 114222230 -30060259 - MIR SINE MIR -47 215 2 * 913 285 49 26 chr12 114222230 114222570 -30059919 - L2 LINE L2 -1122 2192 1845 2104 129 7 0 chr12 114222570 114222873 -30059616 + AluSx SINE Alu 1 305 -7 366 216 10 72 chr12 114222927 114223024 -30059465 - MIR SINE MIR -66 196 106 301 309 198 14 chr12 114223170 114223448 -30059041 + L3 LINE CR1 1088 1416 -161 558 244 113 38 chr12 114223470 114223708 -30058781 - MIR SINE MIR -5 257 2 1526 157 55 55 chr12 114224127 114224439 -30058050 - AluJo SINE Alu 0 312 1 303 210 24 113 chr12 114225147 114225223 -30057266 - MIR SINE MIR -66 142 78 2179 96 0 0 chr12 114225223 114225528 -30056961 + AluSg SINE Alu 1 305 0 303 210 24 113 chr12 114225528 114225574 -30056915 - MIR SINE MIR -130 78 30 263 218 39 13 chr12 114225647 114225725 -30056764 - LTR67 LTR ERVL -21 536 457 489 292 46 8 chr12 114226127 114226257 -30056232 + L2 LINE L2 3138 3272 0 676 237 28 28 chr12 114226439 114226616 -30055873 + MER5B DNA MER1_type 1 177 -1 1039 147 17 82 chr12 114227299 114227530 -30054959 + MER20 DNA MER1_type 3 218 -1 216 0 0 0 chr12 114228278 114228302 -30054187 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 794 268 69 15 chr12 114228499 114228743 -30053746 - MIR SINE MIR -8 254 4 775 171 41 0 chr12 114229045 114229191 -30053298 - MER63 DNA MER1_type 0 1062 911 1493 179 101 0 chr12 114229192 114229499 -30052990 + L1MD2 LINE L1 5565 5902 -457 1346 200 89 34 chr12 114229505 114229855 -30052634 - MLT1A2 LTR MaLR -5 369 1 1267 220 122 29 chr12 114229855 114230274 -30052215 + L1MD2 LINE L1 5899 6356 -3 1047 216 138 10 chr12 114230290 114230587 -30051902 + L1ME2 LINE L1 5813 6147 -17 22 80 0 0 chr12 114230595 114230645 -30051844 + AT_rich Low_complexity Low_complexity 1 50 0 365 241 0 25 chr12 114230755 114230834 -30051655 - MER63 DNA MER1_type -229 832 756 198 226 38 19 chr12 114230839 114230892 -30051597 - MIR3 SINE MIR -54 154 101 * 199 374 0 9 chr12 114230867 114230974 -30051515 - L2 LINE L2 -1035 2279 2174 372 352 64 0 chr12 114231308 114231527 -30050962 + L2 LINE L2 2397 2629 -685 2337 99 0 3 chr12 114231618 114231921 -30050568 + AluSc SINE Alu 1 302 -7 317 135 0 0 chr12 114232105 114232157 -30050332 + U5 snRNA snRNA 1 52 -64 455 256 98 8 chr12 114232417 114232550 -30049939 + L2 LINE L2 3108 3252 -20 24 0 0 0 chr12 114232960 114232984 -30049505 + AT_rich Low_complexity Low_complexity 1 24 0 2188 73 0 0 chr12 114233505 114233766 -30048723 - AluSc SINE Alu -8 301 41 232 339 94 41 chr12 114234211 114234382 -30048107 - MIR3 SINE MIR -5 203 24 620 257 88 52 chr12 114234541 114234790 -30047699 + MIR SINE MIR 3 260 -2 5951 121 45 9 chr12 114235118 114235814 -30046675 - L1PA15 LINE L1 0 6165 5433 2220 117 0 13 chr12 114235814 114236122 -30046367 + AluSx SINE Alu 1 304 -8 5951 121 45 9 chr12 114236122 114236656 -30045833 - L1PA15 LINE L1 -732 5433 4920 239 273 23 57 chr12 114236934 114237022 -30045467 - MIR SINE MIR -120 88 2 1072 317 57 45 chr12 114238452 114239032 -30043457 - MLT1K LTR MaLR 0 588 2 307 281 132 9 chr12 114239518 114239632 -30042857 + L2 LINE L2 3186 3313 0 411 279 27 18 chr12 114239638 114239749 -30042740 - MIR SINE MIR -141 121 10 204 333 191 29 chr12 114240850 114241264 -30041225 - L2 LINE L2 -548 2766 2286 288 232 242 11 chr12 114241312 114241407 -30041082 - L2 LINE L2 0 3272 3156 2795 160 29 4 chr12 114242112 114242567 -30039922 - MLT1C LTR MaLR -1 466 1 460 152 120 0 chr12 114242673 114242765 -30039724 - L1ME2 LINE L1 -123 6041 5939 1122 242 70 31 chr12 114242792 114243180 -30039309 + L2 LINE L2 2041 2443 -871 217 250 0 19 chr12 114243452 114243504 -30038985 + (TATG)n Simple_repeat Simple_repeat 4 54 0 2361 189 44 0 chr12 114244173 114244608 -30037881 + L1MB7 LINE L1 5431 5884 -300 2265 85 0 3 chr12 114244626 114244920 -30037569 + AluSg SINE Alu 1 293 -17 315 317 28 14 chr12 114244979 114245124 -30037365 - L2 LINE L2 -447 2867 2721 650 258 0 0 chr12 114245159 114245291 -30037198 - FLAM_A SINE Alu -1 132 1 2168 113 0 13 chr12 114245346 114245646 -30036843 + AluSx SINE Alu 2 297 -15 1643 108 48 4 chr12 114245651 114245882 -30036607 - Tigger3(Golem) DNA MER2_type -677 2352 2112 723 136 0 0 chr12 114245901 114246004 -30036485 - Tigger3(Golem) DNA MER2_type -2924 105 3 2074 140 3 3 chr12 114246594 114246902 -30035587 + AluSx SINE Alu 1 308 -4 5379 210 73 41 chr12 114247012 114248777 -30033712 - L1MC4a LINE L1 0 7808 5878 390 238 162 9 chr12 114249513 114249618 -30032871 + MIR SINE MIR 114 234 -28 198 341 80 72 chr12 114250058 114250196 -30032293 - L2 LINE L2 0 3272 3134 2260 114 0 13 chr12 114250392 114250708 -30031781 - AluSx SINE Alu 0 312 1 7624 25 0 0 chr12 114250894 114251725 -30030764 + L1PA3 LINE L1 5321 6151 -4 2575 214 80 47 chr12 114251738 114251840 -30030649 - L1MC4a LINE L1 -533 5631 5534 2182 121 0 10 chr12 114251840 114252145 -30030344 - AluSx SINE Alu -10 302 1 2575 214 80 47 chr12 114252145 114253201 -30029288 - L1MC4a LINE L1 -630 5534 4437 385 209 34 47 chr12 114253220 114253290 -30029199 + L1ME4a LINE L1 5976 6045 -76 369 0 0 0 chr12 114253290 114253331 -30029158 + (CA)n Simple_repeat Simple_repeat 2 42 0 385 209 34 47 chr12 114253331 114253408 -30029081 + L1ME4a LINE L1 6045 6121 0 22 0 0 0 chr12 114254049 114254071 -30028418 + AT_rich Low_complexity Low_complexity 1 22 0 518 165 96 1 chr12 114254152 114254274 -30028215 - L1MB4 LINE L1 -4 6180 6055 293 351 38 8 chr12 114254307 114254438 -30028051 - MIR3 SINE MIR -35 173 39 32 0 0 0 chr12 114254452 114254484 -30028005 + AT_rich Low_complexity Low_complexity 1 32 0 443 294 57 21 chr12 114254959 114255153 -30027336 + MIR SINE MIR 11 211 -51 2244 102 3 0 chr12 114255298 114255592 -30026897 + AluSp SINE Alu 1 295 -18 1004 195 75 0 chr12 114256131 114256305 -30026184 + MER5A DNA MER1_type 3 189 0 222 37 0 0 chr12 114257101 114257128 -30025361 + (T)n Simple_repeat Simple_repeat 1 27 0 195 384 56 24 chr12 114257871 114257996 -30024493 - L2 LINE L2 -27 3245 3117 204 40 0 0 chr12 114258088 114258113 -30024376 + (AGATG)n Simple_repeat Simple_repeat 2 26 0 1761 161 25 7 chr12 114258586 114258865 -30023624 - AluJo SINE Alu -27 285 2 516 216 86 0 chr12 114258865 114258981 -30023508 + MER94 DNA DNA 8 133 -1 * 603 175 88 15 chr12 114258981 114259117 -30023372 - Charlie8 DNA MER1_type -2228 189 44 2074 214 56 63 chr12 114259229 114259780 -30022709 - MLT1H LTR MaLR -2 547 1 2496 75 0 0 chr12 114261144 114261449 -30021040 - AluSg SINE Alu -5 305 1 2387 93 3 0 chr12 114261459 114261761 -30020728 - AluSg SINE Alu -7 303 1 270 0 0 0 chr12 114262629 114262659 -30019830 + (T)n Simple_repeat Simple_repeat 1 30 0 282 366 110 45 chr12 114263072 114263252 -30019237 - L2 LINE L2 0 3272 3105 1923 147 11 0 chr12 114263252 114263538 -30018951 + AluSx SINE Alu 1 289 -23 282 366 110 45 chr12 114263538 114263749 -30018740 - L2 LINE L2 -167 3105 2848 2078 127 0 10 chr12 114263749 114264049 -30018440 + AluSx SINE Alu 1 297 -15 282 366 110 45 chr12 114264049 114264082 -30018407 - L2 LINE L2 -424 2848 2819 302 229 67 76 chr12 114264288 114264393 -30018096 - LTR67 LTR ERVL -26 531 428 355 259 108 42 chr12 114264846 114265012 -30017477 - MLT1J2 LTR MaLR -21 429 253 340 236 130 24 chr12 114265047 114265170 -30017319 - MLT1J2 LTR MaLR -307 143 8 228 349 47 17 chr12 114265458 114265630 -30016859 + MIR SINE MIR 19 195 -67 543 282 126 5 chr12 114266220 114266426 -30016063 - MIR SINE MIR -7 255 25 2324 118 0 6 chr12 114266450 114266764 -30015725 + AluSx SINE Alu 1 312 0 790 143 15 38 chr12 114266785 114266918 -30015571 + FLAM_C SINE Alu 1 130 -3 602 301 151 5 chr12 114267717 114267936 -30014553 + MIR SINE MIR 5 255 -7 2360 79 3 13 chr12 114268108 114268413 -30014076 - AluSg SINE Alu -8 302 1 331 279 130 19 chr12 114268587 114268741 -30013748 - Charlie8 DNA MER1_type -2132 285 115 359 232 81 141 chr12 114268946 114269012 -30013477 + MER5A DNA MER1_type 2 70 -119 2307 84 3 0 chr12 114269012 114269309 -30013180 + AluSx SINE Alu 1 298 -14 359 232 81 141 chr12 114269309 114269325 -30013164 + MER5A DNA MER1_type 70 85 -104 2045 101 22 0 chr12 114269325 114269593 -30012896 + AluSx SINE Alu 7 280 -32 359 232 81 141 chr12 114269593 114269707 -30012782 + MER5A DNA MER1_type 85 187 -2 1502 39 6 0 chr12 114269985 114270165 -30012324 + AluYb8 SINE Alu 136 316 -2 923 141 31 12 chr12 114270289 114270452 -30012037 - L1MB3 LINE L1 -1 6182 6017 228 239 84 0 chr12 114270477 114270548 -30011941 - L1P LINE L1 -825 5321 5245 370 242 22 0 chr12 114270952 114271043 -30011446 - L1MB3 LINE L1 -2011 5797 5705 314 372 83 12 chr12 114272246 114272488 -30010001 - L2 LINE L2 -341 2973 2715 1774 157 45 0 chr12 114272519 114272806 -30009683 + AluJb SINE Alu 1 300 -12 32 57 0 0 chr12 114273012 114273065 -30009424 + AT_rich Low_complexity Low_complexity 1 53 0 1557 164 78 0 chr12 114273162 114273431 -30009058 + AluSx SINE Alu 1 290 -22 254 244 0 0 chr12 114275983 114276065 -30006424 + AluY SINE Alu 3 84 -216 350 319 70 73 chr12 114276128 114276485 -30006004 + L1M2 LINE L1 759 1114 -5735 12485 49 14 0 chr12 114276678 114278275 -30004214 + L1P LINE L1 3284 4903 -1243 1740 97 0 4 chr12 114278455 114278682 -30003807 - AluSg/x SINE Alu -13 299 74 1174 60 0 0 chr12 114278683 114278817 -30003672 - AluSg1 SINE Alu -173 136 3 342 206 0 0 chr12 114278819 114278882 -30003607 + MER5A DNA MER1_type 126 188 -1 333 250 164 0 chr12 114278893 114278997 -30003492 - L1MB3 LINE L1 -524 5646 5526 21 0 0 0 chr12 114279045 114279066 -30003423 + GC_rich Low_complexity Low_complexity 1 21 0 393 22 0 0 chr12 114280547 114280593 -30001896 + (TG)n Simple_repeat Simple_repeat 1 46 0 1940 145 3 0 chr12 114280864 114281154 -30001335 + AluSq SINE Alu 3 293 -20 1004 195 75 0 chr12 114281691 114281865 -30000624 + MER5A DNA MER1_type 3 189 0 198 71 0 0 chr12 114282661 114282689 -29999800 + (T)n Simple_repeat Simple_repeat 1 28 0 515 265 151 53 chr12 114283415 114283926 -29998563 - MLT1F LTR MaLR -13 529 20 2364 92 3 0 chr12 114284447 114284752 -29997737 - AluSp SINE Alu -7 306 1 481 279 0 51 chr12 114284854 114285012 -29997477 - L2 LINE L2 0 3313 3164 1626 266 113 37 chr12 114285176 114285955 -29996534 - L1ME LINE L1 -5166 904 67 1046 219 70 5 chr12 114285955 114286170 -29996319 - MER82 DNA MER2_type 0 653 425 1768 173 29 2 chr12 114286176 114286593 -29995896 - L1M3 LINE L1 -745 5401 5004 400 255 39 0 chr12 114286718 114286820 -29995669 + MIR SINE MIR 88 193 -69 389 309 16 12 chr12 114286852 114287098 -29995391 - L1MCc LINE L1 -4894 2228 1982 402 196 21 64 chr12 114287390 114287544 -29994945 - HsTC2 DNA Tc2 -3 1895 29 392 248 80 16 chr12 114287578 114287703 -29994786 - L1MCc LINE L1 -5317 1614 1482 339 333 48 16 chr12 114288059 114288185 -29994304 + L2 LINE L2 3143 3272 0 301 356 126 22 chr12 114288265 114288582 -29993907 + L2 LINE L2 2406 2755 -559 204 271 14 14 chr12 114290077 114290147 -29992342 + L2 LINE L2 2782 2851 -463 751 308 118 9 chr12 114290542 114290889 -29991600 - L2 LINE L2 -346 2968 2584 207 0 0 0 chr12 114293109 114293132 -29989357 + (T)n Simple_repeat Simple_repeat 1 23 0 672 255 11 27 chr12 114293154 114293338 -29989151 - MLT1H1 LTR MaLR -2 553 373 436 197 72 106 chr12 114293359 114293567 -29988922 - MLT1H1 LTR MaLR -343 247 47 1209 220 89 62 chr12 114293569 114293973 -29988516 - L1MCc LINE L1 -5649 1282 868 26 88 0 0 chr12 114294245 114294313 -29988176 + AT_rich Low_complexity Low_complexity 1 68 0 793 264 186 36 chr12 114294317 114295029 -29987460 - L1ME3 LINE L1 -210 5952 5348 2299 101 0 0 chr12 114295029 114295317 -29987172 - AluSx SINE Alu -24 288 1 793 264 186 36 chr12 114295317 114295399 -29987090 - L1ME3 LINE L1 -814 5348 5280 2894 129 31 7 chr12 114295399 114295817 -29986672 + MSTA LTR MaLR 1 428 0 793 264 186 36 chr12 114295817 114296389 -29986100 - L1ME3 LINE L1 -882 5280 4383 433 193 61 94 chr12 114296380 114296593 -29985896 - L1MC5 LINE L1 -35 7926 7721 * 2839 174 8 13 chr12 114296681 114297159 -29985330 - MLT2B2 LTR ERVL -39 476 1 2271 98 3 3 chr12 114297174 114297471 -29985018 - AluSg SINE Alu -13 297 1 372 186 21 121 chr12 114297471 114297611 -29984878 - L1MC5 LINE L1 -564 7397 7272 808 205 56 78 chr12 114297713 114298056 -29984433 - L1MC4 LINE L1 -719 7242 6931 687 227 18 39 chr12 114298039 114298535 -29983954 - L1M4 LINE L1 -1475 4671 4048 * 249 318 27 0 chr12 114298537 114298647 -29983842 - L1MCc LINE L1 -5654 769 657 497 253 89 32 chr12 114298916 114299106 -29983383 - L1MCc LINE L1 -5954 469 269 762 252 77 35 chr12 114299139 114299425 -29983064 - L1ME3A LINE L1 -183 5987 5690 390 328 9 0 chr12 114299425 114299541 -29982948 + MER5A DNA MER1_type 14 130 -59 405 0 0 0 chr12 114299542 114299587 -29982902 + (TG)n Simple_repeat Simple_repeat 2 46 0 1678 100 0 0 chr12 114299587 114299797 -29982692 - AluSg/x SINE Alu -28 281 72 1174 60 0 0 chr12 114299798 114299932 -29982557 - AluSg1 SINE Alu -173 136 3 342 206 0 0 chr12 114299934 114299997 -29982492 + MER5A DNA MER1_type 126 188 -1 333 250 164 0 chr12 114300008 114300112 -29982377 - L1ME3A LINE L1 -524 5646 5526 1573 167 76 0 chr12 114302482 114302758 -29979731 - AluSx SINE Alu -15 297 1 32 57 0 0 chr12 114302855 114302908 -29979581 + AT_rich Low_complexity Low_complexity 1 53 0 27277 26 7 0 chr12 114303443 114307447 -29975042 + L1PA2 LINE L1 2118 6151 -4 231 294 128 0 chr12 114307596 114307698 -29974791 - L2 LINE L2 0 3313 3199 37185 96 12 12 chr12 114307715 114313448 -29969041 + L1P2 LINE L1 11 5743 -412 24182 42 45 3 chr12 114313592 114316596 -29965893 - L1P LINE L1 -3017 3129 2 2168 131 0 6 chr12 114316597 114316911 -29965578 - AluSx SINE Alu 0 312 1 26 0 0 0 chr12 114317430 114317456 -29965033 + AT_rich Low_complexity Low_complexity 1 26 0 1009 225 142 79 chr12 114317545 114318052 -29964437 - HAL1 LINE L1 -904 1603 1065 2422 84 0 10 chr12 114318076 114318387 -29964102 - AluY SINE Alu -3 308 1 1355 137 11 163 chr12 114318417 114318854 -29963635 - AluJb SINE Alu 0 399 16 290 286 152 41 chr12 114318904 114319075 -29963414 - HAL1 LINE L1 -1594 913 724 879 245 202 37 chr12 114319403 114320103 -29962386 - L2 LINE L2 -3 3310 2495 258 297 117 36 chr12 114320365 114320476 -29962013 - HAL1 LINE L1 -2387 120 1 21 0 0 0 chr12 114320555 114320576 -29961913 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr12 114320642 114320662 -29961827 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2453 111 141 5 chr12 114321017 114321394 -29961095 - MSTA LTR MaLR 0 428 1 1932 131 137 11 chr12 114322119 114322491 -29959998 - MSTA LTR MaLR -9 419 1 1211 212 77 5 chr12 114322860 114323082 -29959407 + MER8 DNA MER2_type 2 239 0 435 305 64 32 chr12 114323355 114323542 -29958947 - L3 LINE CR1 0 1577 1385 534 306 54 0 chr12 114324146 114324293 -29958196 - L2 LINE L2 0 3313 3159 698 144 0 36 chr12 114324306 114324417 -29958072 + FLAM_A SINE Alu 29 135 -7 742 318 46 31 chr12 114324435 114324831 -29957658 - L2 LINE L2 -169 3144 2743 882 205 108 4 chr12 114324846 114325175 -29957314 - MSTD LTR MaLR 0 396 4 1582 251 76 20 chr12 114325185 114325674 -29956815 - L2 LINE L2 -578 2736 2221 2510 72 3 0 chr12 114325810 114326117 -29956372 + AluY SINE Alu 1 308 -3 280 304 65 0 chr12 114326121 114326213 -29956276 - MIR SINE MIR -131 131 34 180 0 0 0 chr12 114327060 114327080 -29955409 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr12 114329721 114329744 -29952745 + AT_rich Low_complexity Low_complexity 1 23 0 279 354 112 6 chr12 114331157 114331318 -29951171 + L2 LINE L2 3093 3270 -2 1390 213 89 14 chr12 114331716 114332064 -29950425 - L1MC4a LINE L1 0 7808 7435 496 277 116 22 chr12 114332136 114332403 -29950086 - L1ME LINE L1 -306 5815 5524 250 289 26 26 chr12 114333561 114333637 -29948852 - MIR SINE MIR -179 83 8 202 303 105 0 chr12 114334184 114334260 -29948229 - L2 LINE L2 -52 3220 3137 408 217 113 17 chr12 114334346 114334461 -29948028 - MIR SINE MIR -74 188 63 337 186 43 14 chr12 114334670 114334740 -29947749 - L2 LINE L2 -1 3312 3241 236 284 68 47 chr12 114334940 114335088 -29947401 + MLT1K LTR MaLR 27 177 -411 1993 116 0 55 chr12 114335291 114335602 -29946887 - AluSx SINE Alu -17 295 2 317 244 24 12 chr12 114335604 114335686 -29946803 + LTR67 LTR ERVL 461 543 -14 612 271 57 21 chr12 114335702 114335894 -29946595 + MIR SINE MIR 45 243 -19 2552 77 26 6 chr12 114338081 114338420 -29944069 - L1PA10 LINE L1 -41 6127 5782 338 263 0 0 chr12 114338564 114338659 -29943830 + (TA)n Simple_repeat Simple_repeat 2 96 0 938 178 23 11 chr12 114338660 114338834 -29943655 - AluJo SINE Alu -17 295 120 1605 172 32 18 chr12 114339263 114339548 -29942941 + AluJo SINE Alu 13 301 -11 1200 160 10 0 chr12 114339604 114339798 -29942691 + AluJo SINE Alu 84 279 -33 1698 175 10 17 chr12 114339933 114340225 -29942264 + AluJo SINE Alu 1 290 -22 1073 243 151 15 chr12 114340283 114340839 -29941650 + L2 LINE L2 2412 3060 -253 907 295 84 21 chr12 114341005 114341445 -29941044 + L2 LINE L2 2782 3245 -68 230 140 0 20 chr12 114341797 114341831 -29940658 + (TA)n Simple_repeat Simple_repeat 2 36 -14 2067 153 23 40 chr12 114341831 114342185 -29940304 - MER7A DNA MER2_type 0 346 1 230 140 0 20 chr12 114342185 114342200 -29940289 + (TA)n Simple_repeat Simple_repeat 36 50 0 327 205 12 23 chr12 114342201 114342316 -29940173 - L1ME LINE L1 -302 5819 5708 2354 110 3 0 chr12 114342378 114342688 -29939801 + AluSp SINE Alu 1 311 -2 1525 164 102 6 chr12 114343586 114343939 -29938550 - Charlie5 DNA MER1_type 0 2624 2238 631 76 50 84 chr12 114343958 114344077 -29938412 - Charlie5 DNA MER1_type -2488 124 10 2084 114 3 10 chr12 114344100 114344399 -29938090 - AluSx SINE Alu -15 297 1 2242 97 7 0 chr12 114344410 114344699 -29937790 - AluSc SINE Alu -18 291 1 299 326 91 8 chr12 114345733 114345865 -29936624 - L2 LINE L2 0 3313 3171 23 0 0 0 chr12 114346960 114346983 -29935506 + AT_rich Low_complexity Low_complexity 1 23 0 198 103 0 0 chr12 114346996 114347025 -29935464 + (A)n Simple_repeat Simple_repeat 1 29 0 2297 106 10 13 chr12 114349006 114349318 -29933171 - AluSx SINE Alu -1 311 1 252 276 39 79 chr12 114349553 114349596 -29932893 + L2 LINE L2 3151 3194 -78 2629 106 11 0 chr12 114349596 114349953 -29932536 - MER46B DNA MER2_type 0 236 1 2790 138 23 23 chr12 114349958 114350392 -29932097 - Tigger2a DNA MER2_type 0 434 1 252 276 39 79 chr12 114350392 114350469 -29932020 + L2 LINE L2 3198 3272 0 3029 189 102 61 chr12 114350518 114351919 -29930570 + L1ME1 LINE L1 4681 6334 0 1873 147 25 11 chr12 114351925 114352210 -29930279 + AluSx SINE Alu 1 289 -23 240 111 0 0 chr12 114352213 114352249 -29930240 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 191 326 0 0 chr12 114353476 114353522 -29928967 - L2 LINE L2 -17 3255 3210 1825 161 43 0 chr12 114353592 114353891 -29928598 - AluJo SINE Alu 0 312 1 1904 151 43 0 chr12 114354092 114354391 -29928098 - AluJo SINE Alu 0 312 1 21 57 0 0 chr12 114355338 114355373 -29927116 + AT_rich Low_complexity Low_complexity 1 35 0 208 244 0 0 chr12 114357374 114357419 -29925070 + T-rich Low_complexity Low_complexity 5 49 0 522 271 47 59 chr12 114357730 114357900 -29924589 + MIR3 SINE MIR 36 203 -5 288 255 0 20 chr12 114358454 114358552 -29923937 - L1ME4a LINE L1 -64 6057 5962 515 324 82 55 chr12 114358787 114359192 -29923297 - L2 LINE L2 -90 3182 2750 1597 174 43 13 chr12 114359192 114359491 -29922998 - AluJb SINE Alu -4 308 1 515 324 82 55 chr12 114359491 114359612 -29922877 - L2 LINE L2 -522 2750 2634 201 39 0 0 chr12 114360106 114360132 -29922357 + (TG)n Simple_repeat Simple_repeat 1 26 0 841 192 20 20 chr12 114360133 114360284 -29922205 - AluJo SINE Alu -38 274 124 311 288 14 75 chr12 114360867 114361013 -29921476 + MIR3 SINE MIR 61 197 -11 220 336 64 14 chr12 114361181 114361321 -29921168 - L2 LINE L2 -4 3268 3122 916 251 34 0 chr12 114361351 114361586 -29920903 - MIR SINE MIR -16 246 4 387 359 55 43 chr12 114361739 114362157 -29920332 + L2 LINE L2 1490 1912 -1402 1763 156 24 7 chr12 114362179 114362468 -29920021 - AluSg SINE Alu -16 294 1 445 300 14 7 chr12 114362469 114362609 -29919880 - L2 LINE L2 -10 3303 3163 473 230 26 18 chr12 114362656 114362769 -29919720 + L2 LINE L2 3200 3313 0 2203 91 21 0 chr12 114363334 114363620 -29918869 - AluSg SINE Alu -18 292 1 263 320 131 60 chr12 114363739 114364152 -29918337 + L2 LINE L2 2826 3267 -5 520 231 100 15 chr12 114364213 114364343 -29918146 + MIR SINE MIR 49 189 -73 522 272 75 0 chr12 114365062 114365235 -29917254 - MIR3 SINE MIR 0 208 23 1142 232 31 4 chr12 114365390 114365644 -29916845 - MIR SINE MIR 0 262 2 221 176 0 39 chr12 114365646 114365697 -29916792 + MIR SINE MIR 201 249 -13 6842 60 10 21 chr12 114366547 114367569 -29914920 - L1PA7 LINE L1 -1 6153 5118 31272 36 35 2 chr12 114367690 114371490 -29910999 - L1PA7 LINE L1 -1887 4259 336 24 0 0 0 chr12 114371803 114371827 -29910662 + GC_rich Low_complexity Low_complexity 1 24 0 1421 102 0 0 chr12 114371980 114372167 -29910322 + THE1B LTR MaLR 178 364 0 21 36 0 0 chr12 114372631 114372659 -29909830 + AT_rich Low_complexity Low_complexity 1 28 0 295 357 32 7 chr12 114375399 114375553 -29906936 + MLT1J LTR MaLR 352 509 -2 195 337 24 0 chr12 114375559 114375642 -29906847 - MIR SINE MIR -177 85 1 381 221 0 79 chr12 114376270 114376397 -29906092 - MIR SINE MIR -32 230 114 321 345 78 13 chr12 114378359 114378591 -29903898 + L1ME LINE L1 5266 5512 -609 240 213 98 0 chr12 114378592 114378653 -29903836 + L1ME LINE L1 5560 5626 -495 838 143 74 118 chr12 114378697 114378900 -29903589 + AluJo SINE Alu 1 194 -118 633 280 94 18 chr12 114379434 114379709 -29902780 + MLT1K LTR MaLR 72 367 -221 21 36 0 0 chr12 114379760 114379788 -29902701 + AT_rich Low_complexity Low_complexity 1 28 0 2140 129 0 0 chr12 114379788 114380082 -29902407 + AluSx SINE Alu 1 294 -18 859 280 46 41 chr12 114380089 114380486 -29902003 - L1ME1 LINE L1 -28 6138 5742 229 106 85 43 chr12 114380499 114380546 -29901943 + MLT1K LTR MaLR 435 483 -105 4626 173 35 20 chr12 114380754 114381685 -29900804 - L1MB5 LINE L1 0 6174 5227 974 236 55 66 chr12 114381853 114382293 -29900196 + MER113 DNA MER1_type? 7 441 -80 319 276 13 0 chr12 114383479 114383555 -29898934 + L2 LINE L2 3192 3268 -4 219 327 20 40 chr12 114386258 114386359 -29896130 - MIR SINE MIR -50 212 114 1362 144 159 42 chr12 114387386 114387650 -29894839 + AluJo SINE Alu 1 295 -17 712 203 31 6 chr12 114391573 114391736 -29890753 + MIR SINE MIR 58 224 -38 1512 93 30 55 chr12 114392118 114392354 -29890135 - MER30 DNA MER1_type 0 230 1 493 141 106 0 chr12 114392494 114392579 -29889910 + FLAM SINE Alu 38 131 -12 281 315 81 0 chr12 114392755 114392866 -29889623 - L2 LINE L2 -3 3310 3191 789 266 106 4 chr12 114392906 114393162 -29889327 + L2 LINE L2 3032 3313 0 2281 97 0 37 chr12 114393662 114393983 -29888506 - AluSq SINE Alu 0 313 5 242 308 189 12 chr12 114394734 114394903 -29887586 - MIR3 SINE MIR -5 203 5 255 264 147 39 chr12 114395131 114395260 -29887229 + MIR SINE MIR 47 189 -73 1109 300 56 25 chr12 114395450 114396161 -29886328 - L2 LINE L2 -3 3310 2574 192 370 0 0 chr12 114397004 114397077 -29885412 + L2 LINE L2 3157 3229 -43 1052 158 99 15 chr12 114397180 114397382 -29885107 + MER20 DNA MER1_type 1 219 0 183 241 58 69 chr12 114397514 114397601 -29884888 + MIR SINE MIR 125 210 -52 187 295 114 29 chr12 114399020 114399125 -29883364 - MIR SINE MIR -146 116 3 284 317 89 56 chr12 114399673 114399853 -29882636 - MIR3 SINE MIR -6 202 17 504 254 17 0 chr12 114399919 114400037 -29882452 - L2 LINE L2 -4 3309 3190 1972 132 40 10 chr12 114400375 114400678 -29881811 - AluJb SINE Alu 0 312 1 430 213 115 8 chr12 114402929 114403051 -29879438 - L1ME4a LINE L1 0 6121 5987 261 312 251 0 chr12 114403190 114403453 -29879036 - L1ME4a LINE L1 -233 5888 5560 269 178 140 75 chr12 114405577 114405684 -29876805 + MER103 DNA DNA 10 123 -43 2160 121 7 7 chr12 114405868 114406175 -29876314 - AluJb SINE Alu -5 307 1 226 271 167 0 chr12 114406510 114406606 -29875883 - L2 LINE L2 -21 3251 3140 263 283 28 9 chr12 114406741 114406847 -29875642 - MIR SINE MIR -114 148 41 796 170 0 22 chr12 114407191 114407326 -29875163 + FLAM_A SINE Alu 2 133 0 21 110 0 0 chr12 114407360 114407451 -29875038 + AT_rich Low_complexity Low_complexity 1 91 0 1018 232 52 65 chr12 114407760 114408143 -29874346 - MLT1B LTR MaLR -8 382 5 1552 228 97 54 chr12 114408189 114408371 -29874118 + L1ME3A LINE L1 5580 5753 -417 1866 121 39 70 chr12 114408371 114408758 -29873731 + THE1C LTR MaLR 1 375 0 1552 228 97 54 chr12 114408758 114408867 -29873622 + L1ME3A LINE L1 5753 5856 -314 2301 100 0 3 chr12 114408867 114409167 -29873322 + AluSx SINE Alu 5 303 -9 1552 228 97 54 chr12 114409167 114409430 -29873059 + L1ME3A LINE L1 5856 6159 -11 528 254 114 14 chr12 114409463 114409683 -29872806 + MIR SINE MIR 18 259 -3 683 179 30 0 chr12 114411001 114411135 -29871354 + MER5A DNA MER1_type 1 138 -51 985 115 214 16 chr12 114411416 114411529 -29870960 + MER30 DNA MER1_type 1 90 -140 2323 97 0 0 chr12 114411529 114411819 -29870670 + AluSg SINE Alu 6 295 -15 985 115 214 16 chr12 114411819 114411897 -29870592 + MER30 DNA MER1_type 90 230 0 438 275 0 0 chr12 114412068 114412188 -29870301 + MIR SINE MIR 143 262 0 1177 174 39 0 chr12 114412219 114412426 -29870063 - MER20 DNA MER1_type -4 215 1 409 302 121 26 chr12 114413502 114413647 -29868842 + MIR SINE MIR 8 185 -77 1666 164 10 48 chr12 114413647 114413769 -29868720 + AluJo SINE Alu 1 126 -186 2617 53 0 0 chr12 114413769 114414068 -29868421 - AluY SINE Alu -12 299 1 1666 164 10 48 chr12 114414068 114414238 -29868251 + AluJo SINE Alu 126 282 -30 409 302 121 26 chr12 114414238 114414324 -29868165 + MIR SINE MIR 185 261 -1 193 265 73 15 chr12 114415661 114415729 -29866760 - L2 LINE L2 -43 3270 3199 197 333 0 14 chr12 114416243 114416315 -29866174 - L2 LINE L2 -217 3055 2985 253 297 242 0 chr12 114417654 114417782 -29864707 - MIR SINE MIR -58 204 46 662 153 7 0 chr12 114417992 114418136 -29864353 + (TG)n Simple_repeat Simple_repeat 1 145 0 257 240 40 0 chr12 114418700 114418775 -29863714 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 189 74 0 0 chr12 114419027 114419054 -29863435 + (CA)n Simple_repeat Simple_repeat 1 27 0 3377 221 55 53 chr12 114419073 114420263 -29862226 - L1MC5 LINE L1 -49 7912 6717 432 0 0 0 chr12 114420263 114420311 -29862178 + (TG)n Simple_repeat Simple_repeat 1 48 0 3377 221 55 53 chr12 114420311 114420393 -29862096 - L1MC5 LINE L1 -1244 6717 6637 217 175 0 35 chr12 114420402 114420432 -29862057 + GA-rich Low_complexity Low_complexity 2 31 -25 1144 190 153 43 chr12 114420432 114420758 -29861731 + MLT1A1 LTR MaLR 2 363 -2 217 175 0 35 chr12 114420758 114420784 -29861705 + GA-rich Low_complexity Low_complexity 31 56 0 496 281 79 119 chr12 114420792 114421042 -29861447 - L1MC4a LINE L1 -1223 6585 6326 1455 130 0 5 chr12 114421042 114421249 -29861240 - AluSg/x SINE Alu -10 302 97 496 281 79 119 chr12 114421249 114421545 -29860944 - L1MC4a LINE L1 -1482 6326 6061 33 25 0 0 chr12 114421553 114421593 -29860896 + AT_rich Low_complexity Low_complexity 1 40 0 245 250 0 0 chr12 114421633 114421697 -29860792 - L1MC4a LINE L1 -1915 5893 5830 4141 211 41 43 chr12 114422065 114423398 -29859091 + L1MCb LINE L1 3 1541 -5204 2237 113 7 0 chr12 114423398 114423699 -29858790 + AluSx SINE Alu 1 303 -9 4141 211 41 43 chr12 114423699 114424444 -29858045 + L1MCb LINE L1 1541 2287 -4458 14333 192 37 12 chr12 114424491 114424827 -29857662 - L1PB1 LINE L1 -2 6865 6539 249 108 0 0 chr12 114424827 114424864 -29857625 + (TG)n Simple_repeat Simple_repeat 2 38 0 14333 192 37 12 chr12 114424864 114425322 -29857167 - L1PB1 LINE L1 -328 6539 6094 2538 61 3 0 chr12 114425322 114425632 -29856857 - AluY SINE Alu 0 311 1 14333 192 37 12 chr12 114425632 114431380 -29851109 - L1PB1 LINE L1 -773 6094 31 4340 164 68 35 chr12 114431442 114432442 -29850047 + L1MC3 LINE L1 5318 6350 -1435 1717 151 48 45 chr12 114432448 114432780 -29849709 + MER1B DNA MER1_type 7 339 0 512 158 58 72 chr12 114432781 114432920 -29849569 + L1MC3 LINE L1 6344 6480 -1305 1366 173 31 3 chr12 114432931 114433220 -29849269 + L1MC3 LINE L1 7489 7785 0 2447 220 39 41 chr12 114433299 114434050 -29848439 + L1ME2 LINE L1 5423 6330 -4 32 0 0 0 chr12 114434340 114434372 -29848117 + AT_rich Low_complexity Low_complexity 1 32 0 2107 150 35 11 chr12 114434493 114434859 -29847630 - THE1C LTR MaLR 0 375 1 27 29 0 0 chr12 114434861 114434895 -29847594 + AT_rich Low_complexity Low_complexity 1 34 0 2445 179 19 2 chr12 114435083 114435502 -29846987 - MSTB LTR MaLR 0 426 1 9318 153 35 14 chr12 114435502 114436662 -29845827 - MSTB-int LTR MaLR 0 1651 446 1947 155 0 29 chr12 114436662 114436971 -29845518 + AluSx SINE Alu 1 300 -12 9318 153 35 14 chr12 114436971 114437427 -29845062 - MSTB-int LTR MaLR -1205 446 1 2649 149 17 7 chr12 114437427 114437849 -29844640 - MSTB LTR MaLR 0 426 1 2370 82 7 3 chr12 114438080 114438383 -29844106 + AluSq SINE Alu 1 304 -9 302 331 45 7 chr12 114438627 114438781 -29843708 + L1M4 LINE L1 2895 3054 -3092 206 245 0 0 chr12 114438782 114438831 -29843658 + A-rich Low_complexity Low_complexity 5 53 0 6288 162 32 50 chr12 114438998 114439725 -29842764 + L1MA6 LINE L1 4043 4782 -1421 2493 30 3 7 chr12 114439725 114440024 -29842465 + AluY SINE Alu 1 298 -13 6288 162 32 50 chr12 114440024 114440593 -29841896 + L1MA6 LINE L1 4782 5341 -862 2331 110 0 3 chr12 114440593 114440902 -29841587 + AluSc SINE Alu 1 308 -1 6288 162 32 50 chr12 114440902 114441020 -29841469 + L1MA6 LINE L1 5341 5460 -743 * 37365 75 10 7 chr12 114441019 114447148 -29835341 - L1PA6 LINE L1 0 6154 11 5169 122 24 7 chr12 114447158 114448000 -29834489 + L1MA6 LINE L1 5445 6300 0 201 237 0 0 chr12 114448777 114448815 -29833674 + polypurine Low_complexity Low_complexity 4 41 0 2214 110 0 0 chr12 114448890 114449172 -29833317 + AluSx SINE Alu 1 282 -30 37 62 0 0 chr12 114449491 114449556 -29832933 + AT_rich Low_complexity Low_complexity 1 65 0 1152 236 85 35 chr12 114449559 114449759 -29832730 - MLT1C LTR MaLR 0 467 279 2300 114 89 30 chr12 114449759 114450163 -29832326 + MSTA LTR MaLR 1 428 0 1152 236 85 35 chr12 114450163 114450380 -29832109 - MLT1C LTR MaLR -188 279 24 1466 160 98 4 chr12 114450445 114450701 -29831788 - AluJb SINE Alu -11 301 22 1854 147 49 43 chr12 114450732 114451080 -29831409 - THE1B LTR MaLR 0 364 15 365 244 31 0 chr12 114451321 114451448 -29831041 + L1MC4a LINE L1 4518 4648 -1498 323 272 81 42 chr12 114451455 114451716 -29830773 + L1MC4a LINE L1 5611 5881 -1927 238 229 0 0 chr12 114451791 114451839 -29830650 - MIR SINE MIR -7 255 208 643 299 63 19 chr12 114452178 114452446 -29830043 - MLT1K LTR MaLR -4 584 305 3107 131 25 0 chr12 114452741 114453261 -29829228 - Tigger3(Golem) DNA MER2_type -2 3027 2495 7534 29 0 1 chr12 114453448 114454883 -29827606 - L1PA4 LINE L1 0 6155 4722 992 96 56 88 chr12 114454891 114455058 -29827431 - Tigger3(Golem) DNA MER2_type -524 2505 2347 1491 165 96 0 chr12 114455058 114455330 -29827159 + AluSg SINE Alu 1 298 -12 992 96 56 88 chr12 114455330 114455412 -29827077 - Tigger3(Golem) DNA MER2_type -682 2347 2264 631 157 59 0 chr12 114455384 114455486 -29827003 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 326 290 73 8 chr12 114455617 114455741 -29826748 + L2 LINE L2 3168 3299 -14 21 0 0 0 chr12 114455763 114455784 -29826705 + AT_rich Low_complexity Low_complexity 1 21 0 699 229 0 7 chr12 114455992 114456136 -29826353 + MLT1J LTR MaLR 60 202 -309 792 266 171 48 chr12 114456149 114456668 -29825821 + MLT1G1 LTR MaLR 13 595 0 2008 123 25 2 chr12 114456695 114457057 -29825432 + MSTB1 LTR MaLR 3 432 0 241 213 173 13 chr12 114457066 114457141 -29825348 + MLT1J LTR MaLR 224 310 -201 263 208 65 0 chr12 114457208 114457285 -29825204 + MLT1J LTR MaLR 427 508 -3 822 178 101 53 chr12 114458081 114458289 -29824200 - MER20 DNA MER1_type 0 219 2 415 314 78 23 chr12 114458661 114459094 -29823395 + HAL1 LINE L1 1164 1620 -887 474 291 184 6 chr12 114459496 114459823 -29822666 + L1ME LINE L1 2156 2540 -3606 366 156 39 0 chr12 114459834 114459911 -29822578 + L1ME2 LINE L1 6072 6151 -13 878 276 115 42 chr12 114459917 114460344 -29822145 - LTR16B LTR ERVL -6 458 1 1595 158 7 32 chr12 114460626 114460905 -29821584 + AluJb SINE Alu 1 272 -40 721 138 12 30 chr12 114460905 114461072 -29821417 + GA-rich Low_complexity Low_complexity 1 164 0 415 305 96 32 chr12 114461084 114461366 -29821123 + L1ME LINE L1 4616 4915 -1231 699 157 72 10 chr12 114461366 114461534 -29820955 + MLT1B LTR MaLR 1 172 -213 260 216 14 151 chr12 114461537 114461676 -29820813 + MER21B LTR ERV1 329 448 -415 654 225 56 11 chr12 114462512 114462690 -29819799 + MLT1B LTR MaLR 189 374 0 558 275 7 13 chr12 114462884 114463033 -29819456 - MLT1E LTR MaLR -444 149 2 246 278 80 68 chr12 114463038 114463281 -29819208 + L1ME LINE L1 5346 5598 -523 2144 202 19 5 chr12 114463281 114463701 -29818788 + MSTB LTR MaLR 1 426 0 246 278 80 68 chr12 114463701 114463910 -29818579 + L1ME LINE L1 5598 5803 -318 1010 128 0 0 chr12 114464043 114464220 -29818269 - AluSg/x SINE Alu 0 315 139 1703 127 4 0 chr12 114464221 114464457 -29818032 - AluSx SINE Alu -75 237 1 989 292 37 19 chr12 114465128 114465559 -29816930 + MLT1L LTR MaLR 93 531 -84 323 211 16 16 chr12 114465642 114465765 -29816724 + CT-rich Low_complexity Low_complexity 2 124 0 2169 136 7 0 chr12 114465922 114466232 -29816257 - AluJb SINE Alu 0 312 1 3628 211 31 33 chr12 114466474 114467013 -29815476 + L1MCb LINE L1 56 595 -6150 1751 167 49 26 chr12 114467013 114467318 -29815171 + AluSx SINE Alu 1 312 0 3628 211 31 33 chr12 114467318 114467708 -29814781 + L1MCb LINE L1 595 985 -5760 2292 90 0 13 chr12 114467708 114468007 -29814482 + AluSx SINE Alu 2 296 -16 3628 211 31 33 chr12 114468007 114468925 -29813564 + L1MCb LINE L1 985 2088 -4657 1434 134 9 13 chr12 114468926 114468948 -29813541 + AluSg/x SINE Alu 66 4294967236 -372 640 224 122 20 chr12 114468948 114469323 -29813166 + FRAM SINE Alu 1 254 0 828 246 160 12 chr12 114469325 114469895 -29812594 + L1MCb LINE L1 2101 2736 -3947 1259 118 38 9 chr12 114469899 114470110 -29812379 + AluSc SINE Alu 75 291 -18 401 298 16 0 chr12 114470110 114470234 -29812255 + L1MCb LINE L1 2741 2866 -3698 2686 210 51 106 chr12 114470999 114472110 -29810379 + L1MC5 LINE L1 6706 7755 -206 401 269 31 23 chr12 114472374 114472504 -29809985 + MER5A DNA MER1_type 53 183 -6 779 328 72 0 chr12 114472529 114472929 -29809560 + L2 LINE L2 2231 2659 -655 279 222 97 0 chr12 114472959 114473031 -29809458 - MLT1H LTR MaLR -17 532 454 656 202 219 0 chr12 114473324 114473507 -29808982 + MIR SINE MIR 40 262 0 305 107 14 112 chr12 114473601 114473671 -29808818 - MLT1H LTR MaLR -35 514 270 242 275 93 83 chr12 114473710 114473903 -29808586 - MLT1H LTR MaLR -248 301 107 272 304 40 32 chr12 114474980 114475105 -29807384 + MIR SINE MIR 137 262 0 429 181 48 19 chr12 114475137 114475242 -29807247 - L1ME3A LINE L1 -5 6165 6058 231 88 0 0 chr12 114475256 114475290 -29807199 + L2 LINE L2 3019 3052 -261 424 199 0 133 chr12 114475320 114475486 -29807003 + L2 LINE L2 3168 3311 -2 267 254 8 90 chr12 114476202 114476336 -29806153 - L2 LINE L2 -252 3061 2939 253 179 388 0 chr12 114476403 114476470 -29806019 - MIR SINE MIR -65 143 50 26 0 0 0 chr12 114476736 114476762 -29805727 + GC_rich Low_complexity Low_complexity 1 26 0 235 359 6 6 chr12 114477041 114477208 -29805281 + GA-rich Low_complexity Low_complexity 1 167 0 * 375 249 40 34 chr12 114477155 114477332 -29805157 + (CAGAGA)n Simple_repeat Simple_repeat 3 180 0 26 82 0 0 chr12 114477695 114477756 -29804733 + GC_rich Low_complexity Low_complexity 1 61 0 280 171 0 29 chr12 114478203 114478273 -29804216 + T-rich Low_complexity Low_complexity 1 68 0 252 143 0 0 chr12 114478307 114478349 -29804140 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 271 305 0 0 chr12 114478624 114478706 -29803783 + (TG)n Simple_repeat Simple_repeat 1 82 0 330 127 270 0 chr12 114483739 114483802 -29798687 - MADE1 DNA Mariner 0 80 1 201 307 223 6 chr12 114484548 114484714 -29797775 - MIR SINE MIR -15 247 46 324 284 133 28 chr12 114485033 114485244 -29797245 - L2 LINE L2 0 3313 3081 180 292 124 0 chr12 114485262 114485375 -29797114 + MIR SINE MIR 63 189 -73 259 315 36 0 chr12 114485385 114485496 -29796993 - MIR SINE MIR -2 260 146 1794 168 10 7 chr12 114485765 114486068 -29796421 + AluJo SINE Alu 1 304 -8 227 207 11 161 chr12 114486131 114486218 -29796271 - MIR SINE MIR -184 78 5 186 43 0 0 chr12 114486232 114486255 -29796234 + (TTTC)n Simple_repeat Simple_repeat 1 23 0 2376 82 10 3 chr12 114486364 114486667 -29795822 - AluSg SINE Alu -5 305 1 408 335 57 8 chr12 114486982 114487230 -29795259 + MIR SINE MIR 3 262 0 207 298 0 0 chr12 114489981 114490038 -29792451 + GA-rich Low_complexity Low_complexity 2 58 0 486 266 94 34 chr12 114490174 114490375 -29792114 - MIR SINE MIR -36 226 17 705 250 49 18 chr12 114490884 114491108 -29791381 + MIR SINE MIR 18 248 -14 2388 110 19 22 chr12 114491209 114491574 -29790915 + THE1B LTR MaLR 1 364 0 243 296 23 11 chr12 114491898 114491986 -29790503 + L2 LINE L2 3184 3272 0 191 212 106 15 chr12 114492119 114492185 -29790304 - MIR SINE MIR -5 257 186 375 269 74 40 chr12 114492305 114492480 -29790009 - MIR SINE MIR -62 200 20 600 237 82 21 chr12 114492600 114492794 -29789695 - MIR SINE MIR -49 213 8 837 234 0 0 chr12 114492815 114492969 -29789520 + FRAM SINE Alu 1 154 -12 380 359 22 11 chr12 114493068 114493252 -29789237 - MIR SINE MIR -21 241 56 268 247 0 9 chr12 114494488 114494567 -29787922 + MIR SINE MIR 27 103 -105 375 60 0 0 chr12 114494573 114494623 -29787866 + (ATG)n Simple_repeat Simple_repeat 1 50 0 617 212 8 8 chr12 114494882 114495014 -29787475 - MER94 DNA DNA -1 133 2 446 335 97 40 chr12 114495288 114495658 -29786831 + L2 LINE L2 2875 3265 -7 524 266 125 22 chr12 114495715 114496169 -29786320 + L2 LINE L2 2730 3312 -1 291 312 45 19 chr12 114496904 114497058 -29785431 + L2 LINE L2 2887 3044 -228 180 148 99 99 chr12 114497161 114497242 -29785247 + MIR3 SINE MIR 3 83 -125 299 244 0 39 chr12 114497551 114497629 -29784860 - MIR SINE MIR -167 95 21 330 262 81 54 chr12 114497646 114497936 -29784553 + L2 LINE L2 2827 3141 -172 300 260 83 10 chr12 114497939 114498035 -29784454 - L2 LINE L2 -35 3278 3176 234 302 21 10 chr12 114499033 114499129 -29783360 - L2 LINE L2 -18 3254 3158 2440 78 0 7 chr12 114499217 114499523 -29782966 - AluSx SINE Alu -8 304 1 187 265 0 0 chr12 114499538 114499587 -29782902 + L2 LINE L2 3216 3264 -8 749 264 14 14 chr12 114500056 114500272 -29782217 + MIR SINE MIR 47 262 0 464 325 87 42 chr12 114500604 114500939 -29781550 + L3 LINE CR1 975 1324 -253 347 296 106 21 chr12 114502050 114502192 -29780297 + MIR SINE MIR 96 249 -13 257 0 30 0 chr12 114502858 114502891 -29779598 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2340 85 14 0 chr12 114503012 114503306 -29779183 + AluSq SINE Alu 1 298 -15 294 143 0 0 chr12 114503847 114503896 -29778593 + (T)n Simple_repeat Simple_repeat 1 49 0 1507 223 63 34 chr12 114504780 114505225 -29777264 - L1ME2 LINE L1 0 6098 5641 1128 73 0 0 chr12 114505226 114505363 -29777126 + AluY SINE Alu 169 305 -6 7552 184 25 32 chr12 114505388 114506610 -29775879 - L1MB3 LINE L1 0 6183 4955 2256 104 0 7 chr12 114506610 114506909 -29775580 - AluSg SINE Alu -10 300 4 7552 184 25 32 chr12 114506909 114507657 -29774832 - L1MB3 LINE L1 -1228 4955 4204 2258 115 0 0 chr12 114507657 114507953 -29774536 + AluSx SINE Alu 1 296 -16 7552 184 25 32 chr12 114507953 114508468 -29774021 - L1MB3 LINE L1 -1979 4204 3724 2194 108 3 3 chr12 114508468 114508765 -29773724 - AluSq SINE Alu -16 297 1 7552 184 25 32 chr12 114508765 114508922 -29773567 - L1MB3 LINE L1 -2459 3724 3567 7188 238 48 39 chr12 114508921 114509269 -29773220 - L1ME2 LINE L1 -469 5635 5292 * 2283 107 0 0 chr12 114509269 114509560 -29772929 - AluSg SINE Alu -19 291 1 7188 238 48 39 chr12 114509560 114509579 -29772910 - L1ME2 LINE L1 -812 5292 5275 387 0 0 0 chr12 114509579 114509622 -29772867 + (TG)n Simple_repeat Simple_repeat 2 44 0 2473 49 0 3 chr12 114509626 114509910 -29772579 - AluY SINE Alu -28 283 1 7188 238 48 39 chr12 114509910 114511873 -29770616 - L1ME2 LINE L1 -831 5273 3239 2125 112 0 30 chr12 114511873 114512169 -29770320 - AluSg SINE Alu -23 287 1 7188 238 48 39 chr12 114512169 114512807 -29769682 - L1ME2 LINE L1 -2865 3239 2608 2187 133 0 0 chr12 114512828 114513128 -29769361 - AluSx SINE Alu -12 300 1 344 150 8 181 chr12 114513135 114513268 -29769221 - L1ME2 LINE L1 -3401 2679 2570 208 155 84 0 chr12 114513281 114513352 -29769137 + (TA)n Simple_repeat Simple_repeat 2 78 0 2003 253 84 74 chr12 114513364 114515346 -29767143 - L1ME2 LINE L1 -3513 2567 564 3786 105 78 27 chr12 114515354 114516416 -29766073 - MER11A LTR ERVK -4 1232 1 412 288 79 28 chr12 114516963 114517140 -29765349 - L1ME2 LINE L1 -5884 186 1 397 289 19 0 chr12 114517156 114517260 -29765229 - MIR SINE MIR -73 135 30 27 0 0 0 chr12 114517318 114517345 -29765144 + AT_rich Low_complexity Low_complexity 1 27 0 333 170 181 75 chr12 114517364 114517552 -29764937 - L1ME4a LINE L1 -18 6103 5896 213 330 0 10 chr12 114517572 114517672 -29764817 - MIR SINE MIR -50 212 114 2301 77 17 17 chr12 114517724 114518021 -29764468 - AluSc SINE Alu -12 297 1 347 174 0 7 chr12 114518045 114518114 -29764375 - MIR SINE MIR -97 111 45 2240 81 53 0 chr12 114518139 114518424 -29764065 - AluY SINE Alu -11 300 1 357 252 37 37 chr12 114518586 114518693 -29763796 + L2 LINE L2 3165 3271 -42 875 164 0 0 chr12 114518759 114518899 -29763590 + AluJb SINE Alu 156 295 -17 752 289 80 37 chr12 114518905 114519255 -29763234 - MLT1L LTR MaLR -10 605 241 646 205 82 87 chr12 114519353 114519406 -29763083 + MER58C DNA MER1_type 22 74 -2346 213 0 36 0 chr12 114519415 114519443 -29763046 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 2202 89 0 27 chr12 114519443 114519726 -29762763 - AluSc SINE Alu -8 301 3 646 205 82 87 chr12 114519726 114519867 -29762622 + MER58C DNA MER1_type 74 215 0 593 263 0 7 chr12 114520182 114520319 -29762170 - MIR3 SINE MIR -33 175 40 449 279 57 9 chr12 114520869 114521066 -29761423 - MIR SINE MIR -33 229 19 356 230 182 34 chr12 114521223 114521371 -29761118 + MER5A DNA MER1_type 13 182 -7 223 213 0 0 chr12 114521399 114521446 -29761043 - L2 LINE L2 -222 3050 3004 2045 118 11 7 chr12 114522357 114522670 -29759819 + AluSq SINE Alu 1 314 0 315 139 139 76 chr12 114523414 114523493 -29758996 + L2 LINE L2 3168 3251 -21 1242 250 98 55 chr12 114523669 114523864 -29758625 - L1MC4a LINE L1 -1641 6167 5982 2037 145 10 0 chr12 114523864 114524160 -29758329 - AluSx SINE Alu -13 299 1 1242 250 98 55 chr12 114524160 114524547 -29757942 - L1MC4a LINE L1 -1826 5982 5560 1769 164 33 4 chr12 114524556 114524874 -29757615 - AluJb SINE Alu 0 326 1 308 123 19 13 chr12 114524877 114524981 -29757508 - AluJo SINE Alu -161 141 1 640 241 87 23 chr12 114524989 114525254 -29757235 - L1MC4a LINE L1 -2255 5553 5272 457 208 47 0 chr12 114526056 114526162 -29756327 + MIR SINE MIR 46 156 -106 262 268 49 0 chr12 114526235 114526317 -29756172 + MIR SINE MIR 167 252 -10 2122 156 11 16 chr12 114526516 114526881 -29755608 + MLT1A1 LTR MaLR 1 363 -2 666 242 64 0 chr12 114527080 114527237 -29755252 - MIR SINE MIR -71 191 25 784 185 0 0 chr12 114527789 114527919 -29754570 - FLAM_A SINE Alu -3 130 1 349 286 76 9 chr12 114528036 114528141 -29754348 + L2 LINE L2 3161 3272 0 420 302 55 6 chr12 114528418 114528600 -29753889 + MIR SINE MIR 70 260 -2 354 289 78 34 chr12 114528617 114528821 -29753668 - MIR SINE MIR -42 220 8 233 293 108 45 chr12 114529068 114529290 -29753199 + L1ME4a LINE L1 5874 6109 -12 189 225 0 0 chr12 114529328 114529368 -29753121 + L2 LINE L2 3005 3044 -228 341 281 0 43 chr12 114529543 114529682 -29752807 - MIR SINE MIR -46 216 84 262 269 115 98 chr12 114529822 114530127 -29752362 + L2 LINE L2 2963 3272 0 304 287 65 9 chr12 114530157 114530265 -29752224 - MIR SINE MIR -65 143 30 1913 139 17 3 chr12 114530427 114530714 -29751775 - AluSx SINE Alu -21 291 1 248 314 63 49 chr12 114530743 114531030 -29751459 - L1ME LINE L1 -452 5669 5379 239 320 47 39 chr12 114531130 114531258 -29751231 - L2 LINE L2 -33 3239 3111 1825 102 0 42 chr12 114531258 114531522 -29750967 + AluSq SINE Alu 61 313 0 990 261 95 56 chr12 114531801 114532388 -29750101 - MLT1L LTR MaLR -5 610 1 1408 208 36 34 chr12 114532888 114533119 -29749370 + MER58D DNA MER1_type 1 235 -2185 2148 121 21 0 chr12 114533119 114533409 -29749080 - AluSx SINE Alu -16 296 1 1408 208 36 34 chr12 114533409 114533562 -29748927 + MER58D DNA MER1_type 235 386 0 471 151 0 0 chr12 114533657 114533730 -29748759 - MLT1A1 LTR MaLR -3 362 290 1626 142 35 53 chr12 114533754 114534072 -29748417 - MLT1A1 LTR MaLR -53 312 1 482 281 48 17 chr12 114535219 114535404 -29747085 - MIR SINE MIR -48 214 25 2078 142 0 0 chr12 114535880 114536182 -29746307 - AluSx SINE Alu -10 302 1 970 250 9 0 chr12 114536327 114536547 -29745942 + MIR SINE MIR 24 245 -17 374 253 0 11 chr12 114536903 114536994 -29745495 - L2 LINE L2 0 3272 3183 262 226 0 0 chr12 114537009 114537071 -29745418 - LTR66 LTR ERVL -148 462 401 227 133 0 17 chr12 114537073 114537123 -29745366 + (TA)n Simple_repeat Simple_repeat 1 51 -8 2165 112 3 0 chr12 114537123 114537408 -29745081 - AluSp SINE Alu -24 289 4 227 133 0 17 chr12 114537408 114537417 -29745072 + (TA)n Simple_repeat Simple_repeat 51 59 0 1809 153 7 17 chr12 114537439 114537727 -29744762 + AluJo SINE Alu 5 289 -23 350 327 100 23 chr12 114537740 114537960 -29744529 - L2 LINE L2 -146 3167 2931 711 309 25 18 chr12 114537999 114538274 -29744215 - LTR16A LTR ERVL -47 403 127 215 333 0 33 chr12 114538380 114538500 -29743989 - L2 LINE L2 -381 2932 2817 22 0 0 0 chr12 114538846 114538868 -29743621 + AT_rich Low_complexity Low_complexity 1 22 0 360 298 82 62 chr12 114539208 114539332 -29743157 - L1MC4a LINE L1 -1921 5887 5767 2317 113 3 0 chr12 114539332 114539633 -29742856 - AluSx SINE Alu -9 303 2 360 298 82 62 chr12 114539633 114539861 -29742628 - L1MC4a LINE L1 -2041 5767 5528 252 0 0 0 chr12 114541533 114541561 -29740928 + (A)n Simple_repeat Simple_repeat 1 28 0 321 230 96 96 chr12 114542204 114542339 -29740150 + L2 LINE L2 3138 3272 0 181 388 26 20 chr12 114542361 114542513 -29739976 + MIR SINE MIR 28 180 -82 22 35 0 0 chr12 114542552 114542581 -29739908 + AT_rich Low_complexity Low_complexity 1 29 0 499 270 81 11 chr12 114542892 114543066 -29739423 - MIR SINE MIR -54 208 23 252 333 33 0 chr12 114545021 114545111 -29737378 + L2 LINE L2 2560 2652 -662 239 188 0 0 chr12 114545107 114545155 -29737334 - L2 LINE L2 0 3313 3266 * 2203 106 17 0 chr12 114545552 114545845 -29736644 + AluSx SINE Alu 1 298 -14 210 71 0 0 chr12 114545982 114546010 -29736479 + (TTA)n Simple_repeat Simple_repeat 2 29 0 498 229 109 27 chr12 114546377 114546560 -29735929 + MIR SINE MIR 65 262 0 868 193 201 47 chr12 114546751 114547025 -29735464 - MER102a DNA MER1_type -8 322 7 383 229 143 0 chr12 114547272 114547377 -29735112 + L2 LINE L2 3189 3308 -5 359 241 165 8 chr12 114547380 114547513 -29734976 + L2 LINE L2 3160 3313 0 255 336 48 0 chr12 114547523 114547627 -29734862 - L2 LINE L2 -4 3268 3160 981 297 61 50 chr12 114547873 114548334 -29734155 + MARNA DNA Mariner 80 545 -41 526 263 65 21 chr12 114548466 114548652 -29733837 - MIR SINE MIR -21 241 48 257 304 29 20 chr12 114549121 114549223 -29733266 + MIR SINE MIR 42 144 -64 789 203 96 17 chr12 114551317 114551494 -29730995 - MER3 DNA MER1_type -18 191 1 240 214 18 18 chr12 114551761 114551817 -29730672 + CT-rich Low_complexity Low_complexity 3 58 0 246 226 32 11 chr12 114552907 114553000 -29729489 + L2 LINE L2 3094 3188 -125 434 178 161 8 chr12 114553117 114553235 -29729254 + L2 LINE L2 3171 3306 -7 226 265 92 41 chr12 114553255 114553353 -29729136 - MIR SINE MIR -26 236 134 1035 253 8 4 chr12 114554673 114554918 -29727571 - MIR SINE MIR -3 259 14 2264 135 3 15 chr12 114555755 114556096 -29726393 + MER1B DNA MER1_type 1 337 0 311 309 0 0 chr12 114556224 114556308 -29726181 + MIR3 SINE MIR 74 157 -51 253 278 33 0 chr12 114556373 114556463 -29726026 - MIR SINE MIR -21 241 149 6944 135 17 36 chr12 114556489 114557985 -29724504 - L1MC1 LINE L1 -16 6317 4857 376 202 135 56 chr12 114558662 114558840 -29723649 + MIR SINE MIR 63 254 -8 509 268 35 52 chr12 114559633 114559871 -29722618 + L1MC/D LINE L1 5529 5770 -468 23 0 0 0 chr12 114559974 114559997 -29722492 + AT_rich Low_complexity Low_complexity 1 23 0 208 250 0 0 chr12 114560000 114560044 -29722445 + GA-rich Low_complexity Low_complexity 3 46 0 726 191 16 0 chr12 114560790 114560916 -29721573 + FLAM_C SINE Alu 1 128 -5 303 316 8 26 chr12 114561024 114561141 -29721348 + MIR SINE MIR 20 134 -128 197 255 0 0 chr12 114561844 114561891 -29720598 + MIR3 SINE MIR 130 176 -32 607 115 122 101 chr12 114562032 114562171 -29720318 + FLAM_C SINE Alu 2 143 0 931 178 31 76 chr12 114562294 114562508 -29719981 - MER2 DNA MER2_type -21 324 119 2182 128 0 0 chr12 114562508 114562806 -29719683 + AluSx SINE Alu 1 298 -14 2162 120 3 7 chr12 114562827 114563128 -29719361 + AluSx SINE Alu 1 300 -12 473 234 9 0 chr12 114563133 114563243 -29719246 - Charlie7 DNA MER1_type -1851 761 651 2272 163 33 5 chr12 114563243 114563635 -29718854 + MSTB LTR MaLR 1 403 -23 1609 234 87 80 chr12 114563617 114564211 -29718278 - Charlie7 DNA MER1_type -1931 681 80 * 2565 68 0 3 chr12 114564211 114564519 -29717970 + AluY SINE Alu 1 307 -4 1609 234 87 80 chr12 114564519 114564600 -29717889 - Charlie7 DNA MER1_type -2532 80 1 253 386 0 9 chr12 114564600 114564714 -29717775 + L2 LINE L2 1791 1903 -1411 365 228 152 14 chr12 114564953 114565098 -29717391 - MIR SINE MIR -15 247 83 186 257 186 0 chr12 114565158 114565228 -29717261 + L2 LINE L2 3230 3312 -1 2684 251 161 18 chr12 114565410 114566582 -29715907 + L2 LINE L2 1728 3068 -245 2221 93 10 17 chr12 114566592 114566725 -29715764 + AluSg SINE Alu 1 133 -177 2353 101 0 3 chr12 114566725 114567031 -29715458 + AluSc SINE Alu 1 305 -4 2221 93 10 17 chr12 114567031 114567199 -29715290 + AluSg SINE Alu 133 300 -10 194 184 61 0 chr12 114567702 114567751 -29714738 - MIR SINE MIR -170 92 41 2341 110 0 19 chr12 114568116 114568433 -29714056 + AluSx SINE Alu 1 311 -1 215 125 25 0 chr12 114568455 114568495 -29713994 + A-rich Low_complexity Low_complexity 4 44 0 207 0 0 0 chr12 114568842 114568865 -29713624 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7968 17 0 0 chr12 114568865 114570262 -29712227 - L1PA3 LINE L1 -8 6147 4751 195 335 118 49 chr12 114571091 114571482 -29711007 + L2 LINE L2 2823 3240 -32 371 278 71 0 chr12 114572289 114572415 -29710074 - L2 LINE L2 0 3272 3138 187 125 62 0 chr12 114572795 114572827 -29709662 + MIR SINE MIR 112 145 -117 390 308 51 26 chr12 114572962 114573030 -29709459 - MIR SINE MIR -40 222 157 1895 149 3 0 chr12 114573030 114573312 -29709177 - AluJb SINE Alu -24 288 6 390 308 51 26 chr12 114573312 114573438 -29709051 - MIR SINE MIR -105 157 23 707 186 197 5 chr12 114574508 114574701 -29707788 + MIR SINE MIR 11 240 -22 478 255 21 35 chr12 114574765 114574906 -29707583 + L2 LINE L2 3134 3272 0 376 298 21 33 chr12 114574910 114575064 -29707425 + MIR3 SINE MIR 56 208 0 269 238 75 0 chr12 114575077 114575157 -29707332 - MIR SINE MIR 0 262 177 1726 163 0 49 chr12 114575182 114575488 -29707001 + AluJb SINE Alu 11 301 -11 531 244 15 0 chr12 114576733 114576864 -29705625 + MIR3 SINE MIR 49 181 -27 500 317 54 63 chr12 114576880 114577325 -29705164 - L2 LINE L2 -5 3267 2827 224 29 0 29 chr12 114579414 114579448 -29703041 + (TAA)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr12 114580759 114580779 -29701710 + (TG)n Simple_repeat Simple_repeat 1 20 0 1655 128 125 21 chr12 114583098 114583379 -29699110 + AluJo SINE Alu 1 310 -2 564 137 58 153 chr12 114583705 114583769 -29698720 + MER5B DNA MER1_type 1 69 -109 1712 180 18 0 chr12 114583769 114584052 -29698437 + AluJo SINE Alu 1 288 -24 564 137 58 153 chr12 114584052 114584177 -29698312 + MER5B DNA MER1_type 69 172 -6 254 278 50 2 chr12 114585259 114585353 -29697136 - MIR SINE MIR -57 151 53 661 180 36 0 chr12 114585360 114585471 -29697018 + FLAM_C SINE Alu 3 117 -16 232 289 83 32 chr12 114586795 114586951 -29695538 - MIR SINE MIR -6 256 93 232 286 0 0 chr12 114587081 114587130 -29695359 - MIR SINE MIR -140 68 20 186 188 29 87 chr12 114587426 114587495 -29694994 - L3 LINE CR1 -4 1573 1509 21 0 0 0 chr12 114588031 114588052 -29694437 + AT_rich Low_complexity Low_complexity 1 21 0 2163 136 0 0 chr12 114588146 114588447 -29694042 - AluSx SINE Alu -11 301 1 2319 90 7 10 chr12 114588489 114588789 -29693700 - AluSp SINE Alu -14 299 1 524 269 0 0 chr12 114588909 114589028 -29693461 + MER5B DNA MER1_type 1 119 -59 211 299 0 46 chr12 114589143 114589230 -29693259 - MIR3 SINE MIR -7 201 119 258 296 133 15 chr12 114590061 114590196 -29692293 + MIR3 SINE MIR 33 183 -25 221 216 39 0 chr12 114590567 114590618 -29691871 + MIR SINE MIR 99 151 -111 210 236 55 0 chr12 114590790 114590845 -29691644 + L2 LINE L2 3210 3267 -5 232 197 143 22 chr12 114591129 114591245 -29691244 + MIR SINE MIR 15 149 -63 459 191 70 9 chr12 114591259 114591374 -29691115 + L2 LINE L2 3189 3310 -3 260 292 0 0 chr12 114591535 114591600 -29690889 + MIR SINE MIR 46 110 -152 195 188 0 0 chr12 114592537 114592585 -29689904 + GA-rich Low_complexity Low_complexity 4 51 0 430 257 35 0 chr12 114593218 114593331 -29689158 - MIR SINE MIR -60 202 86 377 158 167 50 chr12 114593403 114593523 -29688966 - MIR SINE MIR -54 208 75 373 302 101 28 chr12 114593932 114594111 -29688378 - MIR SINE MIR -70 192 1 214 240 0 0 chr12 114594346 114594396 -29688093 - L2 LINE L2 0 3313 3264 1431 180 46 18 chr12 114594799 114595082 -29687407 - AluJb SINE Alu -20 292 2 594 294 52 20 chr12 114595534 114595786 -29686703 + MIR SINE MIR 2 261 -1 943 215 58 5 chr12 114595813 114596036 -29686453 + MIR SINE MIR 22 256 -6 183 42 0 0 chr12 114596347 114596371 -29686118 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 280 310 118 32 chr12 114596415 114596602 -29685887 - MIR SINE MIR -10 252 50 565 213 0 113 chr12 114596701 114596842 -29685647 + MER2 DNA MER2_type 1 125 -220 730 106 0 10 chr12 114596843 114596947 -29685542 - AluSp/q SINE Alu -23 290 188 445 285 49 0 chr12 114597055 114597199 -29685290 + L1M4 LINE L1 4034 4184 -1962 620 202 16 8 chr12 114597201 114597330 -29685159 + MLT1C LTR MaLR 194 323 -144 11457 196 58 37 chr12 114598821 114603976 -29678513 - L1MCa LINE L1 -1145 5281 20 745 213 97 124 chr12 114604174 114604554 -29677935 - MLT1J LTR MaLR -49 462 93 675 167 8 32 chr12 114604573 114604699 -29677790 + FLAM_A SINE Alu 1 123 -10 359 302 38 0 chr12 114605243 114605349 -29677140 - MIR3 SINE MIR -31 177 68 342 0 0 0 chr12 114605967 114606005 -29676484 + (TG)n Simple_repeat Simple_repeat 2 39 0 538 234 75 66 chr12 114606018 114606245 -29676244 + MIR SINE MIR 30 258 -4 466 236 103 67 chr12 114607356 114607551 -29674938 - MARNA DNA Mariner -219 367 166 2242 122 3 3 chr12 114607775 114608087 -29674402 - AluSx SINE Alu 0 312 1 221 256 12 73 chr12 114609557 114609639 -29672850 - MIR SINE MIR -74 188 112 247 320 0 0 chr12 114609849 114609927 -29672562 + L1ME LINE L1 5691 5768 -353 1196 262 47 21 chr12 114609966 114610451 -29672038 + L2 LINE L2 2585 3093 -220 2262 122 3 0 chr12 114610451 114610755 -29671734 - AluSx SINE Alu -7 305 1 1196 262 47 21 chr12 114610755 114610982 -29671507 + L2 LINE L2 3093 3313 0 1889 103 6 35 chr12 114611144 114611274 -29671215 + L1MA8 LINE L1 5989 6121 -170 2133 142 3 0 chr12 114611274 114611585 -29670904 + AluSx SINE Alu 1 312 0 1889 103 6 35 chr12 114611585 114611766 -29670723 + L1MA8 LINE L1 6121 6291 0 307 312 14 55 chr12 114611808 114612026 -29670463 - L2 LINE L2 -220 3052 2844 195 279 163 0 chr12 114612108 114612255 -29670234 - L2 LINE L2 -655 2659 2489 653 250 27 0 chr12 114613074 114613258 -29669231 + MIR SINE MIR 37 225 -37 268 289 0 24 chr12 114613242 114613325 -29669164 - MIR SINE MIR -181 81 1 * 254 342 25 55 chr12 114613441 114613678 -29668811 - L2 LINE L2 -392 2922 2693 1077 129 18 0 chr12 114613689 114613852 -29668637 + FRAM SINE Alu 1 166 -10 443 296 52 26 chr12 114613856 114614086 -29668403 - L2 LINE L2 -647 2667 2432 454 236 118 23 chr12 114614891 114615111 -29667378 - L1ME4a LINE L1 -233 5888 5648 2179 124 13 3 chr12 114615301 114615608 -29666881 + AluSx SINE Alu 1 310 -2 329 264 208 20 chr12 114615902 114616099 -29666390 + L3 LINE CR1 878 1111 -466 261 210 32 0 chr12 114616541 114616603 -29665886 - MIR SINE MIR -126 136 73 872 263 33 4 chr12 114616887 114617130 -29665359 - MIR SINE MIR 0 262 13 491 246 114 62 chr12 114617372 114617845 -29664644 - L2 LINE L2 -91 3222 2713 325 303 200 20 chr12 114618686 114618881 -29663608 - L2 LINE L2 -31 3241 3012 490 193 104 15 chr12 114619061 114619196 -29663293 + MER103 DNA DNA 15 161 -5 424 288 181 21 chr12 114619357 114619600 -29662889 - MARNA DNA Mariner -220 366 85 219 36 0 0 chr12 114619600 114619628 -29662861 + (A)n Simple_repeat Simple_repeat 1 28 0 2138 118 3 0 chr12 114620212 114620501 -29661988 + AluSx SINE Alu 1 290 -22 236 148 0 93 chr12 114620501 114620555 -29661934 + L1PA8A LINE L1 6082 6130 -1 470 304 31 0 chr12 114620879 114621040 -29661449 + L3 LINE CR1 1336 1501 -76 232 277 131 46 chr12 114621203 114621333 -29661156 + MER5A DNA MER1_type 1 141 -48 671 238 6 12 chr12 114621465 114621633 -29660856 + MIR SINE MIR 51 217 -45 437 284 14 27 chr12 114621639 114621787 -29660702 - MER5A DNA MER1_type -7 182 37 334 284 17 26 chr12 114621684 114621800 -29660689 + MER5A DNA MER1_type 64 178 -11 * 397 265 82 41 chr12 114621848 114622057 -29660432 + MIR SINE MIR 38 249 -13 2367 103 3 6 chr12 114622261 114622572 -29659917 + AluSg SINE Alu 1 310 0 228 225 0 0 chr12 114622962 114623002 -29659487 + polypyrimidine Low_complexity Low_complexity 1 40 0 336 64 0 0 chr12 114623266 114623313 -29659176 + (TC)n Simple_repeat Simple_repeat 2 48 0 306 0 0 0 chr12 114623313 114623347 -29659142 + (CA)n Simple_repeat Simple_repeat 1 34 0 2229 106 20 3 chr12 114623392 114623695 -29658794 + AluSq SINE Alu 1 308 -5 966 138 60 0 chr12 114623699 114623866 -29658623 + L1MC3 LINE L1 7593 7769 -16 235 146 36 0 chr12 114623895 114623950 -29658539 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 2532 81 0 0 chr12 114624181 114624488 -29658001 - AluSg SINE Alu -3 307 1 21 36 0 0 chr12 114624839 114624867 -29657622 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 114624885 114624907 -29657582 + AT_rich Low_complexity Low_complexity 1 22 0 349 200 63 42 chr12 114625048 114625143 -29657346 - L2 LINE L2 -35 3237 3141 387 202 16 65 chr12 114625547 114625671 -29656818 - MIR SINE MIR -13 249 132 637 278 146 17 chr12 114626580 114626921 -29655568 - MLT1J2 LTR MaLR -3 443 63 224 281 12 0 chr12 114627438 114627520 -29654969 - MIR SINE MIR -91 117 35 438 270 104 0 chr12 114627759 114627922 -29654567 + L2 LINE L2 3134 3313 0 2514 78 0 0 chr12 114627997 114628293 -29654196 + AluSc SINE Alu 1 296 -13 510 262 8 0 chr12 114628369 114628491 -29653998 + MIR SINE MIR 47 169 -93 453 240 146 6 chr12 114629052 114629223 -29653266 + L2 LINE L2 2335 2529 -785 421 254 212 0 chr12 114629995 114630184 -29652305 - MIR SINE MIR 0 262 34 214 200 33 17 chr12 114630805 114630865 -29651624 + MIR SINE MIR 188 248 -14 2031 103 17 17 chr12 114630878 114631170 -29651319 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr12 114632693 114632722 -29649767 + AT_rich Low_complexity Low_complexity 1 29 0 228 250 31 0 chr12 114633006 114633070 -29649419 + LTR33 LTR ERVL 1 66 -455 1418 173 14 29 chr12 114633592 114633870 -29648619 - MLT1C LTR MaLR 0 467 194 584 289 36 0 chr12 114633872 114634038 -29648451 - L1MDb LINE L1 -1962 4979 4808 2218 99 0 7 chr12 114634073 114634395 -29648094 - AluSq SINE Alu 0 320 1 1020 166 37 78 chr12 114634401 114634618 -29647871 - AluJo SINE Alu -21 291 84 514 189 11 89 chr12 114634637 114634827 -29647662 - L1MDb LINE L1 -2373 4568 4394 4191 240 59 36 chr12 114634832 114636147 -29646342 - L1MDb LINE L1 -2789 4152 2869 1722 180 3 23 chr12 114636147 114636452 -29646037 - AluJo SINE Alu -13 299 1 4191 240 59 36 chr12 114636452 114636515 -29645974 - L1MDb LINE L1 -4072 2869 2809 2865 16 0 0 chr12 114636515 114636826 -29645663 - AluY SINE Alu 0 311 1 4191 240 59 36 chr12 114636826 114637862 -29644627 - L1MDb LINE L1 -4132 2809 1689 1147 208 136 8 chr12 114637869 114638119 -29644370 + AluJo SINE Alu 1 282 -30 33 66 0 0 chr12 114638119 114638180 -29644309 + AT_rich Low_complexity Low_complexity 1 61 0 1859 189 199 17 chr12 114638184 114638777 -29643712 - L1MDb LINE L1 -4901 1522 822 1628 279 52 14 chr12 114638883 114639436 -29643053 - L1MDb LINE L1 -5825 598 25 298 239 92 46 chr12 114639431 114639561 -29642928 + L1ME4a LINE L1 5975 6110 -11 * 2192 136 0 0 chr12 114639901 114640210 -29642279 + AluSx SINE Alu 1 309 -3 470 261 23 0 chr12 114640294 114640424 -29642065 - L2 LINE L2 0 3313 3181 188 313 15 0 chr12 114640571 114640638 -29641851 - L2 LINE L2 0 3313 3246 339 130 0 0 chr12 114640919 114640973 -29641516 + (TG)n Simple_repeat Simple_repeat 2 55 0 574 260 86 7 chr12 114641127 114641352 -29641137 + MIR SINE MIR 5 248 -14 505 242 41 31 chr12 114641677 114641871 -29640618 - L2 LINE L2 -300 3013 2818 601 312 96 45 chr12 114641939 114642621 -29639868 - L2 LINE L2 -5 3267 2518 592 236 116 88 chr12 114642682 114643304 -29639185 + L1MC5 LINE L1 7293 7931 -30 203 289 66 0 chr12 114643328 114643404 -29639085 - L2 LINE L2 -884 2430 2350 295 278 178 45 chr12 114643604 114643904 -29638585 - L2 LINE L2 -1264 2050 1791 207 0 0 0 chr12 114643904 114643927 -29638562 + (TTG)n Simple_repeat Simple_repeat 2 24 0 295 278 178 45 chr12 114643927 114643969 -29638520 - L2 LINE L2 -1523 1791 1756 2124 117 7 3 chr12 114643969 114644259 -29638230 + AluSx SINE Alu 1 291 -21 295 278 178 45 chr12 114644259 114644612 -29637877 - L2 LINE L2 -1558 1756 1261 352 282 193 20 chr12 114645641 114645843 -29636646 - MIR SINE MIR -14 248 12 340 220 104 82 chr12 114645852 114646023 -29636466 - MIR SINE MIR -66 196 24 392 259 77 77 chr12 114648256 114648596 -29633893 + MER102b DNA MER1_type 1 340 -1 199 269 19 0 chr12 114649430 114649482 -29633007 - L2 LINE L2 -3 3310 3258 361 328 80 5 chr12 114649519 114649720 -29632769 - L2 LINE L2 -174 3139 2924 2225 111 7 7 chr12 114649904 114650210 -29632279 + AluSq SINE Alu 1 306 -7 330 254 115 33 chr12 114650325 114650447 -29632042 - MIR SINE MIR -98 164 33 28 0 0 0 chr12 114650658 114650686 -29631803 + AT_rich Low_complexity Low_complexity 1 28 0 652 284 55 5 chr12 114652835 114653053 -29629436 - MIR SINE MIR 0 262 34 201 74 0 0 chr12 114653119 114653146 -29629343 + (A)n Simple_repeat Simple_repeat 1 27 0 360 311 33 8 chr12 114653703 114653825 -29628664 - L2 LINE L2 -21 3251 3127 532 202 58 52 chr12 114654470 114654643 -29627846 + MIR SINE MIR 3 176 -86 2467 65 0 37 chr12 114654947 114655268 -29627221 + AluY SINE Alu 1 309 -2 183 238 0 0 chr12 114655336 114655378 -29627111 - MIR SINE MIR -130 132 91 * 234 224 53 40 chr12 114655365 114655441 -29627048 - L2 LINE L2 -1 3271 3195 2110 121 0 16 chr12 114656491 114656805 -29625684 - AluJb SINE Alu -3 309 1 211 203 81 40 chr12 114660174 114660248 -29622241 - MIR SINE MIR -70 192 116 181 335 112 35 chr12 114660333 114660503 -29621986 - MIR SINE MIR -60 202 20 342 262 186 6 chr12 114660649 114660826 -29621663 + L1MEc LINE L1 1537 1743 -833 2203 90 35 3 chr12 114660858 114661146 -29621343 + AluSx SINE Alu 1 297 -15 392 212 40 50 chr12 114661181 114661280 -29621209 - MLT1G LTR MaLR 0 590 493 593 261 85 10 chr12 114661285 114661484 -29621005 - MLT1G LTR MaLR -367 223 10 2400 83 3 13 chr12 114662083 114662396 -29620093 + AluSg SINE Alu 1 310 0 2137 140 0 0 chr12 114664174 114664481 -29618008 - AluSx SINE Alu -5 307 1 526 248 7 15 chr12 114664510 114664647 -29617842 - L1MA10 LINE L1 -3 6331 6196 * 1241 184 35 21 chr12 114664640 114664928 -29617561 + L1 LINE L1 4756 5047 -1099 1149 244 118 56 chr12 114666891 114666977 -29615512 + L1M4 LINE L1 3627 3706 -2440 2235 117 0 0 chr12 114666977 114667268 -29615221 - AluSx SINE Alu -21 291 1 1149 244 118 56 chr12 114667268 114667808 -29614681 + L1M4 LINE L1 3706 4292 -1854 598 205 3 101 chr12 114667819 114668117 -29614372 - AluSg SINE Alu -15 295 27 1650 171 57 30 chr12 114668289 114668386 -29614103 + MER2 DNA MER2_type 2 95 -249 2310 103 0 3 chr12 114668386 114668688 -29613801 + AluSc SINE Alu 1 301 -8 1650 171 57 30 chr12 114668688 114668924 -29613565 + MER2 DNA MER2_type 95 344 0 22 0 0 0 chr12 114669407 114669429 -29613060 + AT_rich Low_complexity Low_complexity 1 22 0 962 208 22 0 chr12 114670366 114670549 -29611940 - MER5A DNA MER1_type -2 187 1 335 313 269 5 chr12 114670868 114671069 -29611420 + MIR SINE MIR 8 261 -1 189 107 0 0 chr12 114671556 114671584 -29610905 + (T)n Simple_repeat Simple_repeat 1 28 0 409 177 0 0 chr12 114671643 114671705 -29610784 + AluJ/FLAM SINE Alu 2 63 -249 33 25 0 0 chr12 114671820 114671860 -29610629 + AT_rich Low_complexity Low_complexity 1 40 0 1298 166 30 11 chr12 114671903 114672174 -29610315 + L1MA4 LINE L1 6017 6292 -8 2351 88 3 7 chr12 114672325 114672632 -29609857 - AluSg SINE Alu -4 306 1 441 264 56 0 chr12 114672947 114673072 -29609417 + MIR SINE MIR 63 194 -68 653 224 14 42 chr12 114673117 114673331 -29609158 - L2 LINE L2 0 3313 3106 182 351 0 0 chr12 114673555 114673629 -29608860 + L2 LINE L2 3197 3270 -2 321 355 16 8 chr12 114673733 114673854 -29608635 + MIR3 SINE MIR 49 170 -38 738 274 41 8 chr12 114674204 114674449 -29608040 + MIR SINE MIR 10 262 0 293 286 25 25 chr12 114674460 114674579 -29607910 - MIR SINE MIR -140 122 4 258 286 13 0 chr12 114675071 114675148 -29607341 + MIR3 SINE MIR 94 171 -37 403 207 121 0 chr12 114675215 114675331 -29607158 + MIR SINE MIR 119 248 -14 220 149 21 21 chr12 114675336 114675383 -29607106 + (ATG)n Simple_repeat Simple_repeat 3 49 0 2130 120 3 0 chr12 114675432 114675723 -29606766 + AluSx SINE Alu 1 292 -20 182 308 103 26 chr12 114676611 114676728 -29605761 - L2 LINE L2 -4 3268 3143 1971 134 3 3 chr12 114677131 114677458 -29605031 + AluSx SINE Alu 1 327 0 1019 176 122 0 chr12 114677857 114678045 -29604444 + AluJo SINE Alu 85 295 -17 2943 149 34 2 chr12 114678537 114679029 -29603460 + L1MB3 LINE L1 5639 6151 -32 2443 82 0 0 chr12 114679029 114679322 -29603167 + AluSx SINE Alu 3 295 -17 2943 149 34 2 chr12 114679322 114679354 -29603135 + L1MB3 LINE L1 6151 6180 -3 1516 174 71 17 chr12 114679493 114679787 -29602702 + AluJo SINE Alu 1 310 -2 468 305 101 19 chr12 114679845 114680301 -29602188 + L1MEd LINE L1 926 1507 -983 962 300 43 20 chr12 114680804 114680994 -29601495 - MLT1J2 LTR MaLR 0 450 266 758 226 44 0 chr12 114680994 114681175 -29601314 + MER5A DNA MER1_type 1 189 0 962 300 43 20 chr12 114681175 114681424 -29601065 - MLT1J2 LTR MaLR -184 266 1 333 0 0 0 chr12 114681876 114681913 -29600576 + (T)n Simple_repeat Simple_repeat 1 37 0 286 315 99 31 chr12 114681978 114682200 -29600289 - L2 LINE L2 0 3313 3077 21 36 0 0 chr12 114683714 114683742 -29598747 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr12 114683836 114683865 -29598624 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 23 33 0 0 chr12 114683898 114683928 -29598561 + AT_rich Low_complexity Low_complexity 1 30 0 201 74 0 0 chr12 114685271 114685298 -29597191 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 845 267 109 28 chr12 114685298 114685758 -29596731 - L2 LINE L2 -13 3300 2804 607 111 0 11 chr12 114685920 114686010 -29596479 + AluSg/x SINE Alu 210 298 -12 1079 166 34 15 chr12 114686124 114686329 -29596160 + MER3 DNA MER1_type 1 209 0 2209 103 42 21 chr12 114686442 114686772 -29595717 - MER1B DNA MER1_type 0 337 1 1885 148 14 0 chr12 114686876 114687193 -29595296 - AluJb SINE Alu 0 321 1 406 236 207 6 chr12 114687260 114687411 -29595078 + MER5A DNA MER1_type 4 189 0 577 234 120 6 chr12 114687423 114687581 -29594908 + MIR SINE MIR 32 207 -55 186 280 0 0 chr12 114687621 114687671 -29594818 - L2 LINE L2 0 3313 3264 318 204 129 0 chr12 114688320 114688413 -29594076 - L2 LINE L2 -12 3260 3156 239 263 76 25 chr12 114688666 114688784 -29593705 - L1ME4a LINE L1 -3 6118 5995 452 258 73 0 chr12 114689285 114689409 -29593080 - MIR SINE MIR -82 180 48 287 307 61 9 chr12 114689419 114689533 -29592956 + MIR SINE MIR 10 129 -133 194 100 0 0 chr12 114689946 114689976 -29592513 + MIR SINE MIR 120 149 -113 1844 162 3 7 chr12 114690657 114690786 -29591703 + AluJb SINE Alu 3 131 -181 2392 101 0 7 chr12 114690786 114691093 -29591396 + AluSg SINE Alu 1 305 -5 1844 162 3 7 chr12 114691093 114691259 -29591230 + AluJb SINE Alu 131 297 -15 257 141 16 78 chr12 114691552 114691616 -29590873 + CT-rich Low_complexity Low_complexity 3 62 0 377 273 33 16 chr12 114691618 114691739 -29590750 - L2 LINE L2 -15 3298 3176 220 333 114 20 chr12 114691884 114692085 -29590404 - L2 LINE L2 -353 2961 2742 2139 128 20 3 chr12 114692361 114692667 -29589822 + AluSx SINE Alu 1 311 -1 407 241 41 59 chr12 114692765 114692935 -29589554 - MIR SINE MIR -76 186 20 2152 105 10 23 chr12 114693377 114693514 -29588975 + AluSx SINE Alu 1 138 -174 2423 91 0 3 chr12 114693514 114693821 -29588668 + AluSc SINE Alu 1 306 -3 2152 105 10 23 chr12 114693821 114693989 -29588500 + AluSx SINE Alu 138 302 -10 194 184 61 0 chr12 114694492 114694541 -29587948 - MIR SINE MIR -170 92 41 2341 110 0 19 chr12 114694906 114695223 -29587266 + AluSx SINE Alu 1 311 -1 215 125 25 0 chr12 114695245 114695285 -29587204 + A-rich Low_complexity Low_complexity 4 44 0 207 0 0 0 chr12 114695632 114695655 -29586834 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7968 17 0 0 chr12 114695655 114697052 -29585437 - L1PA3 LINE L1 -8 6147 4751 214 331 121 49 chr12 114697882 114698272 -29584217 + L2 LINE L2 2823 3240 -32 371 278 71 0 chr12 114699079 114699205 -29583284 - L2 LINE L2 0 3272 3138 187 125 62 0 chr12 114699585 114699617 -29582872 + MIR SINE MIR 112 145 -117 404 303 51 26 chr12 114699752 114699820 -29582669 - MIR SINE MIR -40 222 157 1881 153 3 0 chr12 114699820 114700102 -29582387 - AluJb SINE Alu -24 288 6 404 303 51 26 chr12 114700102 114700228 -29582261 - MIR SINE MIR -105 157 23 707 186 197 5 chr12 114701297 114701490 -29580999 + MIR SINE MIR 11 240 -22 478 255 21 35 chr12 114701554 114701695 -29580794 + L2 LINE L2 3134 3272 0 376 298 21 33 chr12 114701699 114701853 -29580636 + MIR3 SINE MIR 56 208 0 269 238 75 0 chr12 114701866 114701946 -29580543 - MIR SINE MIR 0 262 177 1726 163 0 49 chr12 114701971 114702277 -29580212 + AluJb SINE Alu 11 301 -11 531 244 15 0 chr12 114703522 114703653 -29578836 + MIR3 SINE MIR 49 181 -27 500 317 54 63 chr12 114703669 114704114 -29578375 - L2 LINE L2 -5 3267 2827 224 29 0 29 chr12 114706203 114706237 -29576252 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1664 128 124 21 chr12 114709888 114710170 -29572319 + AluJo SINE Alu 1 311 -1 564 137 58 153 chr12 114710495 114710559 -29571930 + MER5B DNA MER1_type 1 69 -109 1712 180 18 0 chr12 114710559 114710842 -29571647 + AluJo SINE Alu 1 288 -24 564 137 58 153 chr12 114710842 114710967 -29571522 + MER5B DNA MER1_type 69 172 -6 254 278 50 2 chr12 114712049 114712143 -29570346 - MIR SINE MIR -57 151 53 661 180 36 0 chr12 114712150 114712261 -29570228 + FLAM_C SINE Alu 3 117 -16 232 289 83 32 chr12 114713585 114713741 -29568748 - MIR SINE MIR -6 256 93 232 286 0 0 chr12 114713871 114713920 -29568569 - MIR SINE MIR -140 68 20 186 188 29 87 chr12 114714216 114714285 -29568204 - L3 LINE CR1 -4 1573 1509 21 0 0 0 chr12 114714821 114714842 -29567647 + AT_rich Low_complexity Low_complexity 1 21 0 2163 136 0 0 chr12 114714936 114715237 -29567252 - AluSx SINE Alu -11 301 1 2319 90 7 10 chr12 114715279 114715579 -29566910 - AluSp SINE Alu -14 299 1 524 269 0 0 chr12 114715699 114715818 -29566671 + MER5B DNA MER1_type 1 119 -59 211 299 0 46 chr12 114715933 114716020 -29566469 - MIR3 SINE MIR -7 201 119 273 301 125 15 chr12 114716851 114716987 -29565502 + MIR3 SINE MIR 33 183 -25 221 216 39 0 chr12 114717358 114717409 -29565080 + MIR SINE MIR 99 151 -111 210 236 55 0 chr12 114717581 114717636 -29564853 + L2 LINE L2 3210 3267 -5 232 197 143 22 chr12 114717920 114718036 -29564453 + MIR SINE MIR 15 149 -63 459 191 70 9 chr12 114718050 114718165 -29564324 + L2 LINE L2 3189 3310 -3 260 292 0 0 chr12 114718326 114718391 -29564098 + MIR SINE MIR 46 110 -152 195 188 0 0 chr12 114719328 114719376 -29563113 + GA-rich Low_complexity Low_complexity 4 51 0 430 257 35 0 chr12 114720009 114720122 -29562367 - MIR SINE MIR -60 202 86 377 158 167 50 chr12 114720194 114720314 -29562175 - MIR SINE MIR -54 208 75 419 291 101 28 chr12 114720723 114720902 -29561587 - MIR SINE MIR -70 192 1 214 240 0 0 chr12 114721137 114721187 -29561302 - L2 LINE L2 0 3313 3264 1431 180 46 18 chr12 114721590 114721873 -29560616 - AluJb SINE Alu -20 292 2 594 294 52 20 chr12 114722325 114722577 -29559912 + MIR SINE MIR 2 261 -1 943 215 58 5 chr12 114722604 114722827 -29559662 + MIR SINE MIR 22 256 -6 183 42 0 0 chr12 114723138 114723162 -29559327 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 361 259 114 75 chr12 114723206 114723434 -29559055 - MIR SINE MIR -10 252 16 1145 174 19 164 chr12 114723492 114723634 -29558855 + MER2 DNA MER2_type 1 162 -183 2197 100 3 3 chr12 114723634 114723924 -29558565 - AluSp SINE Alu -23 290 1 1145 174 19 164 chr12 114723924 114723945 -29558544 + MER2 DNA MER2_type 162 184 -161 2170 128 0 0 chr12 114723945 114724243 -29558246 - AluSx SINE Alu -14 298 1 1145 174 19 164 chr12 114724243 114724457 -29558032 + MER2 DNA MER2_type 184 324 -21 622 118 125 73 chr12 114724580 114724716 -29557773 - FLAM_C SINE Alu 0 143 1 211 255 0 0 chr12 114724856 114724903 -29557586 - MIR3 SINE MIR -32 176 130 353 316 8 26 chr12 114725606 114725723 -29556766 - MIR SINE MIR -128 134 20 728 186 16 0 chr12 114725833 114725957 -29556532 - FLAM_C SINE Alu -7 126 1 208 250 0 0 chr12 114726703 114726747 -29555742 + CT-rich Low_complexity Low_complexity 3 46 0 23 0 0 0 chr12 114726750 114726773 -29555716 + AT_rich Low_complexity Low_complexity 1 23 0 463 237 0 46 chr12 114726983 114727114 -29555375 - L1ME LINE L1 -468 5653 5529 511 211 119 62 chr12 114727907 114728101 -29554388 - MIR SINE MIR -8 254 50 407 343 56 81 chr12 114728244 114728603 -29553886 + L2 LINE L2 2825 3174 -98 1517 162 63 15 chr12 114729099 114729370 -29553119 - AluJo SINE Alu -28 284 1 364 361 126 39 chr12 114729524 114730278 -29552211 + L2 LINE L2 2450 3270 -2 261 300 92 25 chr12 114730370 114730490 -29551999 + MER5B DNA MER1_type 1 128 -50 261 0 0 0 chr12 114730493 114730522 -29551967 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 297 0 0 0 chr12 114730521 114730554 -29551935 + (TG)n Simple_repeat Simple_repeat 2 34 0 1339 225 71 0 chr12 114730571 114730838 -29551651 - AluJo SINE Alu -26 286 1 2547 65 0 0 chr12 114730847 114731153 -29551336 - AluY SINE Alu -5 306 1 854 249 88 11 chr12 114731182 114731455 -29551034 + L1MC/D LINE L1 5511 5804 -2004 2118 126 9 14 chr12 114732209 114732558 -29549931 - THE1A LTR MaLR -8 347 1 11894 85 6 1 chr12 114732558 114734129 -29548360 - THE1A-int LTR MaLR 0 1580 2 2001 126 86 3 chr12 114734132 114734458 -29548031 - THE1A LTR MaLR -2 353 1 291 326 31 0 chr12 114734773 114734871 -29547618 - MIR SINE MIR -99 163 63 208 272 304 0 chr12 114735640 114735732 -29546757 + L2 LINE L2 3193 3312 -1 4254 236 108 30 chr12 114737188 114737361 -29545128 + L1MB7 LINE L1 1 159 -6800 893 201 0 6 chr12 114737361 114737520 -29544969 + FRAM SINE Alu 1 158 -8 4254 236 108 30 chr12 114737520 114739585 -29542904 + L1MB7 LINE L1 159 2416 -4543 298 284 92 37 chr12 114739742 114739966 -29542523 + L1MB7 LINE L1 2473 2722 -4416 3545 102 76 22 chr12 114739966 114740547 -29541942 - LTR9 LTR ERV1 0 612 1 298 284 92 37 chr12 114740547 114740649 -29541840 + L1MB7 LINE L1 2722 2817 -4321 4142 190 118 11 chr12 114740661 114740960 -29541529 + L1MB7 LINE L1 5256 5522 -1473 828 118 0 76 chr12 114740960 114741104 -29541385 + AluJo SINE Alu 1 133 -169 4142 190 118 11 chr12 114741104 114742382 -29540107 + L1MB7 LINE L1 5522 6994 -1 662 245 98 1 chr12 114742417 114742617 -29539872 - MIR SINE MIR -41 221 7 287 290 170 0 chr12 114743043 114743143 -29539346 - MIR SINE MIR -56 152 36 441 294 41 24 chr12 114743220 114743390 -29539099 - L3 LINE CR1 -62 1515 1343 399 280 94 40 chr12 114744027 114744257 -29538232 - MIR SINE MIR -17 245 9 260 287 185 38 chr12 114744314 114744471 -29538018 - MIR SINE MIR -82 180 1 1255 179 35 112 chr12 114744560 114744860 -29537629 - MLT1A2 LTR MaLR 0 374 111 2196 124 119 13 chr12 114744860 114745247 -29537242 - MSTA LTR MaLR 0 428 1 1255 179 35 112 chr12 114745247 114745348 -29537141 - MLT1A2 LTR MaLR -263 111 4 234 0 0 0 chr12 114747239 114747265 -29535224 + (T)n Simple_repeat Simple_repeat 1 26 0 349 284 69 17 chr12 114747424 114747540 -29534949 + MIR SINE MIR 19 140 -68 1635 180 10 29 chr12 114747631 114747942 -29534547 + AluJo SINE Alu 1 305 -7 383 268 73 8 chr12 114748600 114748723 -29533766 - MIR SINE MIR -65 197 67 345 142 157 127 chr12 114748812 114748901 -29533588 - MIR SINE MIR 0 262 166 2137 92 26 23 chr12 114748901 114749206 -29533283 - AluSx SINE Alu -1 311 6 345 142 157 127 chr12 114749206 114749250 -29533239 - MIR SINE MIR -96 166 125 639 312 47 44 chr12 114749912 114750060 -29532429 + L2 LINE L2 2400 2546 -768 815 206 38 0 chr12 114750060 114750220 -29532269 + AluJo SINE Alu 137 302 0 639 312 47 44 chr12 114750220 114750411 -29532078 + L2 LINE L2 2546 2740 -574 1090 291 214 25 chr12 114750412 114750638 -29531851 + L2 LINE L2 1597 1779 -1535 2287 96 10 6 chr12 114750638 114750950 -29531539 - AluSp SINE Alu 0 313 1 1090 291 214 25 chr12 114750950 114751258 -29531231 + L2 LINE L2 1779 2028 -1286 2090 121 10 0 chr12 114751258 114751555 -29530934 + AluSg SINE Alu 6 305 -5 1090 291 214 25 chr12 114751555 114751857 -29530632 + L2 LINE L2 2028 2592 -722 289 287 74 33 chr12 114752221 114752343 -29530146 - MLT1J2 LTR MaLR -273 177 51 2404 84 3 0 chr12 114752507 114752805 -29529684 + AluSx SINE Alu 1 299 -13 1183 160 19 0 chr12 114752855 114753061 -29529428 - MER2 DNA MER2_type -134 211 2 525 229 256 23 chr12 114753166 114753428 -29529061 - MER5C DNA MER1_type 0 324 2 24 32 0 0 chr12 114753525 114753556 -29528933 + AT_rich Low_complexity Low_complexity 1 31 0 192 388 38 0 chr12 114753848 114753928 -29528561 + MIR SINE MIR 30 112 -150 2320 98 7 3 chr12 114753945 114754252 -29528237 + AluSx SINE Alu 1 308 -4 1516 146 15 7 chr12 114754401 114754675 -29527814 - L1MA4 LINE L1 -8 6292 6017 33 25 0 0 chr12 114754718 114754758 -29527731 + AT_rich Low_complexity Low_complexity 1 40 0 367 206 0 0 chr12 114754874 114754937 -29527552 - AluJ/FLAM SINE Alu -239 63 1 189 107 0 0 chr12 114754995 114755023 -29527466 + (A)n Simple_repeat Simple_repeat 1 28 0 402 313 269 5 chr12 114755510 114755711 -29526778 - MIR SINE MIR -1 261 8 952 208 22 0 chr12 114756030 114756213 -29526276 + MER5A DNA MER1_type 1 187 -2 22 0 0 0 chr12 114757150 114757172 -29525317 + AT_rich Low_complexity Low_complexity 1 22 0 1607 174 57 30 chr12 114757656 114757892 -29524597 - MER2 DNA MER2_type 0 344 95 2296 103 0 3 chr12 114757892 114758194 -29524295 - AluSc SINE Alu -8 301 1 1607 174 57 30 chr12 114758194 114758291 -29524198 - MER2 DNA MER2_type -249 95 2 181 423 81 9 chr12 114760080 114760191 -29522298 + MIR SINE MIR 19 137 -71 281 304 55 75 chr12 114761829 114762030 -29520459 - L2 LINE L2 0 3313 3117 2448 55 0 19 chr12 114762242 114762549 -29519940 + AluY SINE Alu 1 301 -10 295 241 43 17 chr12 114762757 114762873 -29519616 - L1ME4a LINE L1 0 6121 6003 2393 74 10 0 chr12 114762873 114763169 -29519320 - AluSg SINE Alu -11 299 1 1442 172 61 11 chr12 114763188 114763449 -29519040 - AluJo SINE Alu -33 279 6 2197 99 7 0 chr12 114763477 114763770 -29518719 - AluSp SINE Alu -18 295 1 1539 139 87 49 chr12 114764172 114764459 -29518030 + AluJo SINE Alu 1 298 -14 38 39 0 0 chr12 114764481 114764533 -29517956 + AT_rich Low_complexity Low_complexity 1 52 0 292 278 44 0 chr12 114765828 114765918 -29516571 - MIR SINE MIR -88 174 81 1484 240 103 39 chr12 114766002 114766505 -29515984 + L1ME3A LINE L1 4787 5256 -914 2529 71 0 0 chr12 114766505 114766813 -29515676 + AluY SINE Alu 4 311 0 1484 240 103 39 chr12 114766813 114767273 -29515216 + L1ME3A LINE L1 5256 5814 -356 246 200 113 12 chr12 114767275 114767355 -29515134 - MER5C DNA MER1_type -6 318 231 406 314 16 0 chr12 114767366 114767487 -29515002 - MER5C DNA MER1_type -201 123 1 796 253 120 25 chr12 114767493 114767809 -29514680 + L1ME3A LINE L1 5808 6153 -17 189 353 59 0 chr12 114767951 114768036 -29514453 - L2 LINE L2 -266 3047 2958 2379 83 0 3 chr12 114768390 114768691 -29513798 - AluSq SINE Alu -13 300 1 225 361 59 8 chr12 114768917 114769036 -29513453 - MIR SINE MIR -50 212 88 2210 103 0 35 chr12 114769319 114769631 -29512858 + AluSq SINE Alu 1 301 -12 789 266 28 19 chr12 114770814 114771040 -29511449 - MIR SINE MIR 0 262 34 42 17 0 17 chr12 114771159 114771177 -29511312 + AT_rich Low_complexity Low_complexity 1 18 -41 2006 128 3 7 chr12 114771177 114771466 -29511023 + AluSx SINE Alu 1 288 -24 42 17 0 17 chr12 114771466 114771507 -29510982 + AT_rich Low_complexity Low_complexity 18 59 0 1820 144 49 3 chr12 114771511 114771796 -29510693 + AluSx SINE Alu 1 298 -14 24 0 0 0 chr12 114772734 114772758 -29509731 + AT_rich Low_complexity Low_complexity 1 24 0 363 175 167 8 chr12 114774328 114774448 -29508041 - L1MB3 LINE L1 0 6183 6045 1354 199 29 3 chr12 114774694 114775005 -29507484 - L1 LINE L1 -1300 4846 4528 316 359 120 0 chr12 114775055 114775172 -29507317 - L2 LINE L2 -19 3253 3123 194 182 11 125 chr12 114775425 114775513 -29506976 + L2 LINE L2 3047 3124 -189 1209 264 30 75 chr12 114776636 114777014 -29505475 + L2 LINE L2 2844 3196 -117 1955 110 4 0 chr12 114777014 114777287 -29505202 + AluSx SINE Alu 24 297 -15 1209 264 30 75 chr12 114777287 114777400 -29505089 + L2 LINE L2 3196 3313 0 184 376 87 36 chr12 114777409 114777800 -29504689 + L2 LINE L2 1380 1790 -1524 264 238 130 16 chr12 114777808 114777993 -29504496 - Charlie7 DNA MER1_type 0 2612 2407 2299 114 3 0 chr12 114778025 114778324 -29504165 + AluSx SINE Alu 1 300 -12 425 221 10 0 chr12 114778336 114778439 -29504050 - Charlie7 DNA MER1_type -1858 754 651 2091 163 33 5 chr12 114778439 114778831 -29503658 + MSTB LTR MaLR 1 403 -23 1397 231 91 81 chr12 114778843 114779407 -29503082 - Charlie7 DNA MER1_type -1959 653 80 2570 62 0 3 chr12 114779407 114779715 -29502774 + AluY SINE Alu 1 307 -4 1397 231 91 81 chr12 114779715 114779796 -29502693 - Charlie7 DNA MER1_type -2532 80 1 296 377 0 9 chr12 114779796 114779910 -29502579 + L2 LINE L2 1791 1903 -1411 411 228 152 14 chr12 114780148 114780293 -29502196 - MIR SINE MIR -15 247 83 218 257 186 0 chr12 114780353 114780423 -29502066 + L2 LINE L2 3230 3312 -1 3070 251 161 18 chr12 114780605 114781777 -29500712 + L2 LINE L2 1728 3068 -245 2050 93 4 4 chr12 114781787 114782055 -29500434 + AluSg SINE Alu 1 268 -42 25 0 0 0 chr12 114782215 114782240 -29500249 + AT_rich Low_complexity Low_complexity 1 25 0 2127 140 0 0 chr12 114782249 114782556 -29499933 - AluSx SINE Alu -5 307 1 471 236 8 16 chr12 114782585 114782712 -29499777 - L1MA10 LINE L1 -3 6331 6206 1334 171 35 7 chr12 114782715 114783001 -29499488 + L1MA9 LINE L1 4756 5049 -1097 1008 188 24 0 chr12 114783003 114783168 -29499321 + AluJb SINE Alu 131 299 -13 180 97 0 0 chr12 114783171 114783202 -29499287 + (GGA)n Simple_repeat Simple_repeat 1 31 0 3858 164 45 47 chr12 114783207 114784328 -29498161 + L1MA9 LINE L1 5052 6165 -147 1809 151 21 7 chr12 114784355 114784634 -29497855 + AluJb SINE Alu 5 287 -25 2050 68 0 0 chr12 114788113 114788362 -29494127 + AluY SINE Alu 56 304 -7 1111 283 153 14 chr12 114788725 114789488 -29493001 - L2 LINE L2 -2 3311 2443 3392 254 169 26 chr12 114789512 114790942 -29491547 + L2 LINE L2 806 2440 -874 250 412 0 0 chr12 114792324 114792426 -29490063 + C-rich Low_complexity Low_complexity 1 102 0 21 36 0 0 chr12 114792430 114792458 -29490031 + AT_rich Low_complexity Low_complexity 1 28 0 345 351 71 66 chr12 114792462 114792887 -29489602 + L1M2 LINE L1 897 1323 -5526 21 81 0 0 chr12 114792898 114792935 -29489554 + GC_rich Low_complexity Low_complexity 1 37 0 287 243 35 49 chr12 114793004 114793148 -29489341 + (CCCCG)n Simple_repeat Simple_repeat 1 142 0 239 365 0 42 chr12 114793659 114793755 -29488734 + C-rich Low_complexity Low_complexity 1 92 0 30 0 0 0 chr12 114793808 114793838 -29488651 + AT_rich Low_complexity Low_complexity 1 30 0 60 206 0 0 chr12 114793838 114793940 -29488549 + GC_rich Low_complexity Low_complexity 1 102 0 293 177 48 57 chr12 114793956 114793991 -29488498 + G-rich Low_complexity Low_complexity 6 40 -88 217 68 45 0 chr12 114793991 114794035 -29488454 + (CCGCG)n Simple_repeat Simple_repeat 2 47 0 293 177 48 57 chr12 114794035 114794123 -29488366 + G-rich Low_complexity Low_complexity 40 128 0 32 29 0 0 chr12 114794123 114794157 -29488332 + GC_rich Low_complexity Low_complexity 1 34 0 262 167 42 17 chr12 114794157 114794277 -29488212 + (CGCGG)n Simple_repeat Simple_repeat 4 126 0 218 153 19 64 chr12 114794258 114794415 -29488074 + (CGG)n Simple_repeat Simple_repeat 3 152 0 * 231 212 30 61 chr12 114794418 114794550 -29487939 + (CGCGG)n Simple_repeat Simple_repeat 4 131 0 290 176 39 39 chr12 114794558 114794711 -29487778 + (CGGG)n Simple_repeat Simple_repeat 4 156 0 251 221 0 73 chr12 114795383 114795451 -29487038 + L2 LINE L2 3206 3268 -4 2303 263 66 12 chr12 114795457 114796388 -29486101 - L2 LINE L2 -1 3312 2330 727 180 39 2 chr12 114796390 114796543 -29485946 + L1MB1 LINE L1 5933 6090 -78 1966 80 55 34 chr12 114796543 114796867 -29485622 + L1MA3 LINE L1 5972 6305 0 330 26 0 0 chr12 114796888 114796927 -29485562 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 937 107 0 0 chr12 114796927 114797049 -29485440 - FLAM_C SINE Alu -21 122 1 26 50 0 0 chr12 114797049 114797089 -29485400 + AT_rich Low_complexity Low_complexity 1 40 0 264 216 284 11 chr12 114797148 114797236 -29485253 + MER5A DNA MER1_type 77 188 -1 676 282 41 41 chr12 114797496 114797543 -29484946 - L2 LINE L2 -1035 2279 2233 2014 108 62 25 chr12 114797543 114797868 -29484621 + MER1B DNA MER1_type 1 337 0 676 282 41 41 chr12 114797868 114798065 -29484424 - L2 LINE L2 -1080 2234 2035 361 58 0 0 chr12 114798154 114798206 -29484283 + MADE1 DNA Mariner 29 80 0 216 400 25 0 chr12 114798218 114798338 -29484151 + MIR SINE MIR 140 262 0 861 168 46 63 chr12 114798391 114798629 -29483860 + MER46A DNA MER2_type 2 235 -1 189 0 0 0 chr12 114798917 114798938 -29483551 + (T)n Simple_repeat Simple_repeat 1 21 0 387 267 163 23 chr12 114800143 114800315 -29482174 - MIR SINE MIR -17 245 50 385 257 178 0 chr12 114800574 114800726 -29481763 + L1ME4a LINE L1 5930 6108 -13 23 68 0 0 chr12 114800798 114800842 -29481647 + AT_rich Low_complexity Low_complexity 1 44 0 2429 97 0 0 chr12 114801059 114801369 -29481120 - AluSg SINE Alu 0 310 1 192 340 0 0 chr12 114801457 114801510 -29480979 - L2 LINE L2 -50 3222 3170 351 233 0 0 chr12 114801533 114801606 -29480883 - Charlie8 DNA MER1_type -1 2416 2344 275 277 248 0 chr12 114801702 114801843 -29480646 - Charlie8 DNA MER1_type -2202 215 40 261 0 0 0 chr12 114801915 114801944 -29480545 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 2410 78 7 0 chr12 114802113 114802407 -29480082 + AluSc SINE Alu 1 296 -13 1192 335 104 51 chr12 114803043 114804405 -29478084 + L2 LINE L2 1831 3272 0 259 365 79 15 chr12 114804642 114804845 -29477644 - L2 LINE L2 -466 2848 2633 574 294 147 0 chr12 114807116 114807313 -29475176 - MIR SINE MIR -19 243 18 38 0 0 0 chr12 114811140 114811178 -29471311 + AT_rich Low_complexity Low_complexity 1 38 0 788 223 156 5 chr12 114811993 114812204 -29470285 - MIR SINE MIR 0 262 20 2501 155 144 40 chr12 114812268 114812934 -29469555 - L1MB3 LINE L1 -2 6181 5447 1221 263 132 44 chr12 114813151 114813877 -29468612 + L2 LINE L2 2490 3313 0 401 232 24 8 chr12 114814270 114814395 -29468094 + MER102a DNA MER1_type 39 165 -165 552 279 85 10 chr12 114814403 114814604 -29467885 + MER102a DNA MER1_type 105 320 -10 441 0 0 0 chr12 114816370 114816419 -29466070 + (CA)n Simple_repeat Simple_repeat 2 50 0 360 96 19 0 chr12 114816456 114816532 -29465957 - Alu SINE Alu 0 301 252 21 0 0 0 chr12 114817050 114817071 -29465418 + AT_rich Low_complexity Low_complexity 1 21 0 2028 132 10 0 chr12 114817262 114817566 -29464923 + AluSx SINE Alu 2 308 -4 249 57 0 0 chr12 114819075 114819110 -29463379 + (A)n Simple_repeat Simple_repeat 1 35 0 2390 86 3 3 chr12 114819990 114820294 -29462195 + AluSp SINE Alu 1 304 -9 440 271 116 26 chr12 114821173 114821328 -29461161 - L2 LINE L2 -8 3264 3096 29 0 0 0 chr12 114823304 114823333 -29459156 + AT_rich Low_complexity Low_complexity 1 29 0 1330 146 82 54 chr12 114823749 114824064 -29458425 + MER33 DNA MER1_type 1 324 0 1219 108 65 5 chr12 114825346 114825531 -29456958 - MER30 DNA MER1_type -34 196 1 666 188 15 0 chr12 114828018 114828151 -29454338 - MIR3 SINE MIR -39 169 35 333 252 58 19 chr12 114828335 114828438 -29454051 - L2 LINE L2 -17 3255 3149 331 253 11 21 chr12 114828645 114828740 -29453749 - L2 LINE L2 -5 3267 3174 182 363 59 0 chr12 114829622 114829724 -29452765 + L2 LINE L2 3098 3205 -67 400 291 87 54 chr12 114829790 114830031 -29452458 - MIR SINE MIR -9 253 5 195 42 0 0 chr12 114830079 114830103 -29452386 + (TTA)n Simple_repeat Simple_repeat 1 24 0 388 226 104 27 chr12 114830143 114830273 -29452216 - MIR SINE MIR -61 147 19 182 340 71 17 chr12 114831012 114831250 -29451239 + L2 LINE L2 2286 2536 -778 200 316 143 10 chr12 114831860 114831958 -29450531 + L2 LINE L2 3161 3271 -1 638 194 143 17 chr12 114831996 114832171 -29450318 + MIR3 SINE MIR 5 201 -7 250 312 0 13 chr12 114832913 114832990 -29449499 + GA-rich Low_complexity Low_complexity 6 81 0 258 207 0 0 chr12 114834770 114834828 -29447661 + (TA)n Simple_repeat Simple_repeat 1 58 0 1393 141 141 3 chr12 114836658 114836948 -29445541 - L1ME4a LINE L1 -7 6114 5785 25 0 0 0 chr12 114837016 114837041 -29445448 + AT_rich Low_complexity Low_complexity 1 25 0 754 176 96 21 chr12 114837640 114837828 -29444661 + MER105 DNA DNA 1 202 -2 366 212 54 136 chr12 114838113 114838297 -29444192 - MIR SINE MIR -86 176 8 251 281 102 16 chr12 114838510 114838638 -29443851 - L2 LINE L2 -4 3309 3171 351 332 63 11 chr12 114838910 114839100 -29443389 - L2 LINE L2 -616 2698 2499 738 206 50 0 chr12 114839685 114839826 -29442663 - MER63 DNA MER1_type -62 774 1 556 285 169 46 chr12 114839831 114840263 -29442226 + HAL1 LINE L1 254 738 -1769 1239 266 82 13 chr12 114840299 114840776 -29441713 - L2 LINE L2 0 3313 2804 494 234 19 39 chr12 114840789 114840943 -29441546 + HAL1 LINE L1 778 928 -1579 7165 123 32 45 chr12 114841116 114841342 -29441147 + Tigger3b DNA MER2_type 1 228 -2800 1810 168 0 11 chr12 114841342 114841628 -29440861 + AluJo SINE Alu 1 283 -29 7165 123 32 45 chr12 114841628 114841959 -29440530 + Tigger3b DNA MER2_type 228 562 -2466 2260 99 3 3 chr12 114841959 114842252 -29440237 - AluSg SINE Alu -17 293 1 7165 123 32 45 chr12 114842252 114842940 -29439549 + Tigger3b DNA MER2_type 562 1231 0 618 128 11 0 chr12 114843132 114843226 -29439263 - FLAM SINE Alu -10 133 39 291 93 0 0 chr12 114843369 114843412 -29439077 + (CAT)n Simple_repeat Simple_repeat 2 44 0 210 366 37 22 chr12 114843764 114843898 -29438591 - MIR SINE MIR -126 136 1 746 136 41 0 chr12 114844010 114844179 -29438310 + G-rich Low_complexity Low_complexity 2 177 0 897 65 21 54 chr12 114844201 114844387 -29438102 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 265 290 134 13 chr12 114844449 114844673 -29437816 - MIR SINE MIR 0 262 12 238 268 14 14 chr12 114846600 114846671 -29435818 + MIR SINE MIR 19 89 -119 209 345 14 27 chr12 114846749 114846897 -29435592 - MIR SINE MIR -70 192 47 2323 89 0 7 chr12 114847084 114847386 -29435103 + AluSc SINE Alu 1 300 -9 603 269 92 34 chr12 114847626 114847864 -29434625 - MLT1L LTR MaLR -354 261 10 277 234 0 0 chr12 114847964 114848028 -29434461 + MIR SINE MIR 186 249 -13 195 42 0 0 chr12 114848036 114848060 -29434429 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2050 116 3 11 chr12 114848062 114848347 -29434142 - AluSp SINE Alu -30 283 1 271 254 14 0 chr12 114848348 114848419 -29434070 - MER5A DNA MER1_type -114 75 4 280 248 182 41 chr12 114848711 114848832 -29433657 - MIR SINE MIR -91 171 34 2230 95 24 7 chr12 114849236 114849532 -29432957 - AluSx SINE Alu -11 301 1 217 274 36 12 chr12 114850568 114850652 -29431837 + MIR SINE MIR 176 261 -1 641 195 75 5 chr12 114851729 114851928 -29430561 + L1MD2 LINE L1 6108 6357 -2 957 264 14 0 chr12 114852145 114852361 -29430128 + MER69 DNA AcHobo 65 283 -2243 * 3226 199 66 55 chr12 114852349 114853056 -29429433 + MER69 DNA AcHobo 1452 2150 -376 2263 111 13 0 chr12 114853056 114853362 -29429127 - AluSx SINE Alu -2 310 1 3226 199 66 55 chr12 114853362 114853468 -29429021 + MER69 DNA AcHobo 2150 2253 -273 1878 231 3 0 chr12 114853468 114853832 -29428657 - MLT1A1 LTR MaLR 0 365 1 3226 199 66 55 chr12 114853832 114854078 -29428411 + MER69 DNA AcHobo 2253 2524 -2 299 208 100 4 chr12 114854177 114854319 -29428170 - MIR SINE MIR -36 226 18 181 222 44 0 chr12 114854394 114854439 -29428050 - MIR SINE MIR -57 205 159 351 79 171 40 chr12 114854477 114854553 -29427936 - MLT1I LTR MaLR 0 409 324 2285 112 3 7 chr12 114854819 114855124 -29427365 - AluSq SINE Alu -9 304 1 194 189 0 0 chr12 114855149 114855186 -29427303 - MIR SINE MIR -109 153 117 213 39 0 0 chr12 114855877 114855903 -29426586 + (T)n Simple_repeat Simple_repeat 1 26 0 2175 146 56 5 chr12 114855943 114856321 -29426168 + MER57A LTR ERV1 1 397 -6 222 145 29 43 chr12 114856323 114856392 -29426097 + CT-rich Low_complexity Low_complexity 4 71 0 1368 149 110 4 chr12 114856417 114856645 -29425844 - AluJb SINE Alu -39 273 22 637 215 22 0 chr12 114856760 114856895 -29425594 + AluJb SINE Alu 116 253 -59 2485 73 0 0 chr12 114857398 114857699 -29424790 + AluY SINE Alu 1 301 -10 1864 144 17 10 chr12 114857717 114858008 -29424481 - AluJo SINE Alu -15 297 5 340 307 36 14 chr12 114858991 114859131 -29423358 - MIR SINE MIR -110 152 10 2034 148 7 0 chr12 114859435 114859745 -29422744 - AluJo SINE Alu 0 312 1 2093 141 3 0 chr12 114859803 114860102 -29422387 - AluSx SINE Alu -12 300 1 329 299 173 14 chr12 114860308 114860522 -29421967 + MIR SINE MIR 3 250 -12 281 156 311 11 chr12 114861619 114861709 -29420780 - MER5B DNA MER1_type -8 170 54 310 209 55 55 chr12 114861799 114861909 -29420580 - MIR3 SINE MIR -27 181 72 2378 23 0 0 chr12 114862029 114862287 -29420202 - AluY SINE Alu -53 258 1 320 147 73 0 chr12 114862289 114862357 -29420132 + MER115 DNA AcHobo 613 685 -8 600 308 51 60 chr12 114862761 114863076 -29419413 - L1ME LINE L1 -461 5660 5349 641 268 126 57 chr12 114863205 114863664 -29418825 + L2 LINE L2 2818 3308 -5 1429 139 51 27 chr12 114863664 114863809 -29418680 - L1MA4A LINE L1 -2 6301 6161 1980 140 45 0 chr12 114863809 114864101 -29418388 - AluJo SINE Alu -7 305 1 1429 139 51 27 chr12 114864101 114864250 -29418239 - L1MA4A LINE L1 -142 6161 6000 1395 178 87 0 chr12 114864370 114864612 -29417877 + AluJo SINE Alu 1 263 -49 244 0 56 0 chr12 114865857 114865893 -29416596 + (TAA)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr12 114866051 114866073 -29416416 + (CA)n Simple_repeat Simple_repeat 1 22 0 185 327 59 10 chr12 114866411 114866512 -29415977 + MIR3 SINE MIR 74 179 -29 229 257 14 29 chr12 114867024 114867094 -29415395 + L2 LINE L2 3201 3269 -3 230 275 29 0 chr12 114867549 114867618 -29414871 + MIR3 SINE MIR 124 194 -14 490 226 83 0 chr12 114867915 114868048 -29414441 - MIR SINE MIR -54 208 65 319 173 161 43 chr12 114868102 114868264 -29414225 - L1ME4a LINE L1 0 6121 5941 1524 55 5 30 chr12 114868424 114868625 -29413864 - MER107 DNA MER1_type -1 196 1 2053 107 55 7 chr12 114869460 114869751 -29412738 - AluSx SINE Alu -7 305 1 4018 72 25 7 chr12 114869757 114870323 -29412166 - L1MA2 LINE L1 0 6304 5729 2632 194 56 94 chr12 114870325 114870655 -29411834 - L1MC5 LINE L1 -111 7850 7509 381 164 0 0 chr12 114870655 114870716 -29411773 - L1PA10 LINE L1 -10 6158 6098 2632 194 56 94 chr12 114870716 114871226 -29411263 - L1MC5 LINE L1 -452 7509 7053 2697 87 20 3 chr12 114871226 114871584 -29410905 - THE1B LTR MaLR 0 364 1 2632 194 56 94 chr12 114871584 114871750 -29410739 - L1MC5 LINE L1 -908 7053 6882 189 0 0 0 chr12 114871750 114871771 -29410718 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 251 277 24 12 chr12 114871771 114871854 -29410635 - L1MC4 LINE L1 -1064 6978 6895 * 1973 244 22 18 chr12 114871842 114872338 -29410151 - L1MC4 LINE L1 -1868 5940 5443 1870 116 0 97 chr12 114872460 114872780 -29409709 - AluSx SINE Alu -23 289 1 1239 140 106 53 chr12 114872833 114872863 -29409626 + MLT1B LTR MaLR 112 139 -251 2225 105 7 0 chr12 114872863 114873159 -29409330 - AluSx SINE Alu -14 298 1 1239 140 106 53 chr12 114873159 114873340 -29409149 + MLT1B LTR MaLR 139 342 -48 1969 151 43 6 chr12 114873340 114873665 -29408824 - MER1B DNA MER1_type 0 337 1 1239 140 106 53 chr12 114873665 114873717 -29408772 + MLT1B LTR MaLR 342 390 0 2021 146 3 0 chr12 114873788 114874083 -29408406 - AluJb SINE Alu -16 296 1 909 223 20 5 chr12 114874183 114874385 -29408104 - L1MD3 LINE L1 -6 7989 7785 463 168 10 10 chr12 114874390 114874491 -29407998 + CT-rich Low_complexity Low_complexity 3 103 0 1614 168 12 53 chr12 114874497 114874691 -29407798 - AluJb SINE Alu -3 309 132 2273 124 0 0 chr12 114874691 114874997 -29407492 + AluSx SINE Alu 1 306 -6 1614 168 12 53 chr12 114874997 114875124 -29407365 - AluJb SINE Alu -180 132 1 2680 173 165 83 chr12 114875133 114875511 -29406978 - L1MC3 LINE L1 -222 7563 7217 265 226 0 48 chr12 114875511 114875573 -29406916 - MLT1F1 LTR MaLR -472 95 37 2680 173 165 83 chr12 114875573 114875626 -29406863 - L1MC3 LINE L1 -568 7217 7170 201 94 0 0 chr12 114875626 114875658 -29406831 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2680 173 165 83 chr12 114875658 114875954 -29406535 - L1MC3 LINE L1 -615 7170 6710 814 295 80 61 chr12 114875956 114876080 -29406409 - L1MC4 LINE L1 -1127 5019 4899 1584 165 40 37 chr12 114876080 114876377 -29406112 + AluJo SINE Alu 1 298 -14 814 295 80 61 chr12 114876377 114877621 -29404868 - L1MC4 LINE L1 -1247 4899 3625 4198 146 12 3 chr12 114877621 114878569 -29403920 + L1MB7 LINE L1 4559 5515 -743 876 154 21 27 chr12 114878569 114878745 -29403744 + L1MB7 LINE L1 5998 6184 0 1961 148 3 7 chr12 114878754 114879045 -29403444 + AluJo SINE Alu 1 290 -22 461 17 0 17 chr12 114879932 114879991 -29402498 + (TA)n Simple_repeat Simple_repeat 1 58 0 348 118 66 66 chr12 114880018 114880094 -29402395 - Tigger1 DNA MER2_type -2342 76 1 271 188 12 47 chr12 114880094 114880179 -29402310 + (TA)n Simple_repeat Simple_repeat 1 82 0 10661 103 19 125 chr12 114880201 114881860 -29400629 + Tigger1 DNA MER2_type 403 1971 -447 1077 154 32 5 chr12 114881860 114882048 -29400441 + AluJb SINE Alu 120 312 0 10661 103 19 125 chr12 114882048 114882452 -29400037 + Tigger1 DNA MER2_type 1971 2416 -2 212 83 0 28 chr12 114882452 114882488 -29400001 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr12 114882959 114882981 -29399508 + AT_rich Low_complexity Low_complexity 1 22 0 982 150 0 12 chr12 114882981 114883141 -29399348 - L1PB3 LINE L1 -2 6152 5995 2174 119 3 0 chr12 114883492 114883785 -29398704 + AluSx SINE Alu 1 294 -18 1632 172 0 27 chr12 114884040 114884337 -29398152 - AluJo SINE Alu -23 289 1 1998 82 93 4 chr12 114884346 114884625 -29397864 - AluSc SINE Alu -5 304 1 23 0 0 0 chr12 114884625 114884648 -29397841 + AT_rich Low_complexity Low_complexity 1 23 0 214 208 19 19 chr12 114884668 114884721 -29397768 + CT-rich Low_complexity Low_complexity 5 57 0 1669 229 102 29 chr12 114884965 114885144 -29397345 + L1MC4a LINE L1 6442 6606 -1202 414 0 0 0 chr12 114885144 114885190 -29397299 + (TG)n Simple_repeat Simple_repeat 2 47 0 1669 229 102 29 chr12 114885190 114885530 -29396959 + L1MC4a LINE L1 6606 6999 -809 2190 122 7 0 chr12 114885601 114885904 -29396585 + AluSx SINE Alu 1 305 -7 242 351 182 0 chr12 114886284 114886432 -29396057 - MIR SINE MIR -87 175 1 2857 90 53 101 chr12 114886676 114887100 -29395389 - MER4B LTR ERV1 0 779 224 2193 121 10 0 chr12 114887100 114887407 -29395082 - AluSg SINE Alu 0 310 1 2857 90 53 101 chr12 114887407 114887621 -29394868 - MER4B LTR ERV1 -555 224 1 2255 109 20 49 chr12 114887621 114888026 -29394463 - MER4B-int LTR ERV1 0 6758 6366 19631 115 23 36 chr12 114888075 114890896 -29391593 - MER4B-int LTR ERV1 -415 6343 3489 2841 10 0 0 chr12 114890896 114891206 -29391283 - AluY SINE Alu -1 310 1 19631 115 23 36 chr12 114891206 114891424 -29391065 - MER4B-int LTR ERV1 -3269 3489 3270 2313 104 3 0 chr12 114891424 114891731 -29390758 - AluSq SINE Alu -5 308 1 19631 115 23 36 chr12 114891731 114892079 -29390410 - MER4B-int LTR ERV1 -3488 3270 2997 1063 101 126 0 chr12 114892079 114892238 -29390251 - AluSg/x SINE Alu 0 310 132 8084 112 27 45 chr12 114892238 114894399 -29388090 - MER4B-int LTR ERV1 -3748 3010 1435 1899 200 63 43 chr12 114893349 114893674 -29388815 - LTR57-int LTR ERVL -3766 1577 1260 * 2227 53 15 0 chr12 114893674 114893936 -29388553 + AluY SINE Alu 23 288 -23 1899 200 63 43 chr12 114893936 114893948 -29388541 - LTR57-int LTR ERVL -4083 1260 1250 2148 118 0 3 chr12 114893948 114894244 -29388245 + AluSg SINE Alu 1 295 -15 1899 200 63 43 chr12 114894244 114894491 -29387998 - LTR57-int LTR ERVL -4093 1250 980 * 2775 133 24 13 chr12 114894477 114894937 -29387552 - MER4B-int LTR ERV1 -6056 702 238 1478 137 28 25 chr12 114894979 114895263 -29387226 - MER4B-int LTR ERV1 -6473 285 1 2786 103 60 72 chr12 114895271 114895878 -29386611 - MER4B LTR ERV1 -9 770 1 1728 81 0 4 chr12 114896933 114897167 -29385322 - THE1C LTR MaLR -142 233 1 2572 188 107 20 chr12 114897486 114898184 -29384305 - L1ME1 LINE L1 -6 6160 5402 776 182 39 0 chr12 114898201 114898382 -29384107 + L1ME1 LINE L1 5804 5991 -175 * 1349 202 76 47 chr12 114898381 114898534 -29383955 - L1ME1 LINE L1 -747 5399 5252 2166 97 31 0 chr12 114898534 114898655 -29383834 + AluY SINE Alu 1 117 -194 222 37 0 0 chr12 114898655 114898682 -29383807 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2166 97 31 0 chr12 114898682 114898850 -29383639 + AluY SINE Alu 117 299 -12 1349 202 76 47 chr12 114898850 114899167 -29383322 - L1ME1 LINE L1 -894 5252 4915 2607 190 48 37 chr12 114899379 114899947 -29382542 - MER90 LTR ERV1 0 575 2 557 256 11 83 chr12 114899949 114900129 -29382360 + MIR SINE MIR 8 174 -88 1704 150 4 11 chr12 114900811 114901071 -29381418 - AluJo SINE Alu -30 282 25 1743 183 0 0 chr12 114901135 114901420 -29381069 - AluJb SINE Alu -17 295 11 219 287 171 0 chr12 114902709 114902838 -29379651 - L2 LINE L2 -9 3304 3154 474 18 0 0 chr12 114904769 114904824 -29377665 + (TG)n Simple_repeat Simple_repeat 1 55 0 347 301 49 41 chr12 114905142 114905265 -29377224 + L2 LINE L2 3146 3269 -3 27 49 0 0 chr12 114905902 114905943 -29376546 + AT_rich Low_complexity Low_complexity 1 41 0 910 144 0 0 chr12 114906382 114906514 -29375975 - FLAM_C SINE Alu -11 132 1 417 259 69 23 chr12 114906631 114906762 -29375727 + L2 LINE L2 3134 3270 -2 2009 113 0 0 chr12 114906851 114907126 -29375363 - AluSx SINE Alu -17 295 21 30 27 0 0 chr12 114907520 114907557 -29374932 + AT_rich Low_complexity Low_complexity 1 37 0 2354 96 0 0 chr12 114907646 114907938 -29374551 - AluSx SINE Alu -20 292 1 243 103 0 0 chr12 114908600 114908639 -29373850 + (TTCTC)n Simple_repeat Simple_repeat 3 41 0 276 30 0 0 chr12 114908639 114908672 -29373817 + (TCCTG)n Simple_repeat Simple_repeat 4 36 0 1279 184 14 88 chr12 114908673 114908956 -29373533 - AluJo SINE Alu -27 285 24 306 339 117 37 chr12 114910020 114910395 -29372094 + L2 LINE L2 2006 2410 -904 984 256 246 26 chr12 114910474 114911105 -29371384 - L2 LINE L2 -25 3288 2435 240 378 0 20 chr12 114911648 114911746 -29370743 - L2 LINE L2 -35 3237 3142 272 289 122 0 chr12 114911912 114912002 -29370487 - MIR SINE MIR -157 105 5 1045 265 105 63 chr12 114912423 114912928 -29369561 + L2 LINE L2 2541 3081 -232 2443 84 3 0 chr12 114912928 114913226 -29369263 + AluSx SINE Alu 1 299 -13 1045 265 105 63 chr12 114913226 114913400 -29369089 + L2 LINE L2 3081 3246 -67 4365 126 26 10 chr12 114913580 114914277 -29368212 - L1PA15 LINE L1 -3 6162 5455 2234 114 0 9 chr12 114914849 114915164 -29367325 - AluSx SINE Alu 0 312 1 650 93 0 0 chr12 114915910 114915996 -29366493 + AluSg/x SINE Alu 212 297 -13 2556 64 0 0 chr12 114917048 114917346 -29365143 + AluY SINE Alu 1 298 -13 1782 178 111 21 chr12 114917806 114918285 -29364204 - Charlie1b DNA MER1_type -1 522 1 22 0 0 0 chr12 114920464 114920486 -29362003 + AT_rich Low_complexity Low_complexity 1 22 0 363 284 93 10 chr12 114921799 114921910 -29360579 + MER5A DNA MER1_type 48 166 -12 244 304 188 9 chr12 114922047 114922159 -29360330 - MIR SINE MIR -6 256 125 207 292 0 0 chr12 114922784 114922832 -29359657 + L2 LINE L2 1197 1244 -2070 1556 165 10 41 chr12 114922910 114923201 -29359288 - AluJo SINE Alu -30 282 1 658 267 30 25 chr12 114923361 114923563 -29358926 + L2 LINE L2 2142 2344 -970 244 202 60 48 chr12 114923587 114923671 -29358818 + MER94 DNA DNA 10 94 -40 221 250 109 33 chr12 114923724 114923816 -29358673 + L2 LINE L2 2814 2912 -401 247 221 176 0 chr12 114923819 114923887 -29358602 + MIR SINE MIR 81 160 -102 302 230 216 43 chr12 114924433 114924572 -29357917 + MIR SINE MIR 35 197 -65 28 29 0 0 chr12 114924964 114924999 -29357490 + AT_rich Low_complexity Low_complexity 1 35 0 577 160 40 0 chr12 114926531 114926631 -29355858 + AluSp/q SINE Alu 192 295 -18 1217 81 0 7 chr12 114927084 114927233 -29355256 + AluSx SINE Alu 24 171 -141 963 179 81 16 chr12 114927403 114927495 -29354994 - MER34 LTR ERV1 0 542 457 2321 95 0 10 chr12 114927495 114927799 -29354690 - AluSc SINE Alu -8 301 1 963 179 81 16 chr12 114927799 114928162 -29354327 - MER34 LTR ERV1 -85 457 31 289 265 102 20 chr12 114928917 114929015 -29353474 + MIR SINE MIR 131 236 -26 207 0 0 0 chr12 114929111 114929134 -29353355 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1952 133 0 14 chr12 114929138 114929424 -29353065 - AluJb SINE Alu -30 282 1 257 254 74 16 chr12 114929463 114929585 -29352904 - L1ME4a LINE L1 -8 6113 5985 292 258 184 39 chr12 114930230 114930463 -29352026 - L1ME4a LINE L1 -331 5790 5524 1542 178 70 0 chr12 114930754 114931085 -29351404 - L1MB4 LINE L1 0 6180 5827 233 301 0 37 chr12 114931498 114931634 -29350855 + L2 LINE L2 1279 1409 -1905 687 141 23 47 chr12 114932036 114932139 -29350350 - AluJb SINE Alu -187 125 24 2178 135 33 28 chr12 114932139 114932501 -29349988 + THE1B LTR MaLR 1 364 0 687 141 23 47 chr12 114932501 114932525 -29349964 - AluJb SINE Alu -288 24 1 290 266 153 31 chr12 114932526 114932755 -29349734 + L2 LINE L2 1939 2195 -1119 217 333 135 43 chr12 114932804 114933011 -29349478 + L2 LINE L2 2715 2940 -374 226 339 59 8 chr12 114933625 114933743 -29348746 + L2 LINE L2 3185 3308 -5 512 188 188 19 chr12 114933799 114933959 -29348530 + MIR SINE MIR 36 222 -40 453 168 189 120 chr12 114933962 114934153 -29348336 - MIR SINE MIR -50 212 9 208 254 0 34 chr12 114934134 114934193 -29348296 + L2 LINE L2 3208 3264 -8 * 448 225 33 66 chr12 114935376 114935527 -29346962 - L2 LINE L2 0 3313 3168 202 267 0 0 chr12 114935767 114935812 -29346677 + L2 LINE L2 3220 3264 -8 2195 91 7 3 chr12 114936992 114937290 -29345199 + AluY SINE Alu 1 299 -12 1140 185 5 29 chr12 114937518 114937723 -29344766 - AluJo SINE Alu -30 282 83 1487 157 0 111 chr12 114937724 114938056 -29344433 - AluSx SINE Alu -17 295 1 868 185 0 7 chr12 114938057 114938203 -29344286 - FRAM SINE Alu -31 145 1 216 286 18 0 chr12 114938465 114938521 -29343968 - MER91 DNA MER1_type 0 140 84 467 291 119 7 chr12 114938596 114938747 -29343742 - MIR SINE MIR -93 169 2 21 36 0 0 chr12 114939809 114939837 -29342652 + AT_rich Low_complexity Low_complexity 1 28 0 391 176 0 15 chr12 114941339 114941423 -29341066 - L1M3 LINE L1 -695 5476 5395 206 130 43 22 chr12 114941649 114941695 -29340794 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 554 301 39 6 chr12 114942663 114942819 -29339670 + MIR SINE MIR 23 183 -79 474 197 121 0 chr12 114943060 114943192 -29339297 - L1MD1 LINE L1 -14 6228 6081 5028 92 11 18 chr12 114943246 114943444 -29339045 - L1PA11 LINE L1 0 6174 5976 2312 92 3 10 chr12 114943444 114943749 -29338740 - AluSp SINE Alu -10 303 1 5028 92 11 18 chr12 114943749 114944277 -29338212 - L1PA11 LINE L1 -198 5976 5453 22 35 0 0 chr12 114946172 114946201 -29336288 + AT_rich Low_complexity Low_complexity 1 29 0 297 0 0 0 chr12 114946263 114946296 -29336193 + (CA)n Simple_repeat Simple_repeat 2 34 0 2200 115 3 7 chr12 114946364 114946668 -29335821 + AluSx SINE Alu 1 303 -9 25 0 0 0 chr12 114946777 114946802 -29335687 + AT_rich Low_complexity Low_complexity 1 25 0 2146 116 7 0 chr12 114947958 114948251 -29334238 - AluSx SINE Alu -15 297 3 2064 144 3 3 chr12 114948255 114948553 -29333936 - AluSx SINE Alu -14 298 1 717 246 38 41 chr12 114950001 114950275 -29332214 - L1MA9 LINE L1 -27 6285 6011 2440 96 16 22 chr12 114950275 114950641 -29331848 + THE1B LTR MaLR 1 364 0 717 246 38 41 chr12 114950641 114950659 -29331830 - L1MA9 LINE L1 -301 6011 5994 21 0 0 0 chr12 114950849 114950870 -29331619 + AT_rich Low_complexity Low_complexity 1 21 0 310 309 21 31 chr12 114950984 114951081 -29331408 - MIR3 SINE MIR -52 156 61 2283 94 3 3 chr12 114951411 114951708 -29330781 - AluSg SINE Alu -13 297 1 187 288 85 0 chr12 114952517 114952576 -29329913 - MIR SINE MIR -48 214 151 459 161 0 0 chr12 114952609 114952696 -29329793 + L1MB3 LINE L1 6097 6183 0 2005 113 39 3 chr12 114953707 114953991 -29328498 + AluSx SINE Alu 1 294 -18 387 304 37 61 chr12 114954081 114954242 -29328247 - L1MD1 LINE L1 -2165 5643 5487 1967 121 20 46 chr12 114954242 114954547 -29327942 - AluSg SINE Alu -13 297 1 387 304 37 61 chr12 114954547 114954599 -29327890 - L1MD1 LINE L1 -2321 5487 5435 413 246 169 15 chr12 114954819 114954949 -29327540 + MIR SINE MIR 3 152 -110 1731 198 0 7 chr12 114955125 114955428 -29327061 - AluJo SINE Alu -6 306 6 766 251 70 47 chr12 114956117 114956277 -29326212 - L1MD1 LINE L1 -1987 4159 4004 2576 108 8 3 chr12 114956277 114956639 -29325850 + THE1B LTR MaLR 1 364 0 766 251 70 47 chr12 114956639 114956864 -29325625 - L1MD1 LINE L1 -2142 4004 3765 2035 133 17 0 chr12 114956865 114957166 -29325323 + AluSx SINE Alu 1 306 -6 351 0 0 0 chr12 114957167 114957206 -29325283 + (TA)n Simple_repeat Simple_repeat 1 39 0 679 187 0 45 chr12 114957230 114957364 -29325125 + FLAM_C SINE Alu 1 128 -15 1500 240 37 23 chr12 114957383 114957945 -29324544 - L1MD1 LINE L1 -2392 3754 3185 14195 116 20 33 chr12 114958002 114958215 -29324274 + Tigger1 DNA MER2_type 10 224 -2194 744 206 0 0 chr12 114958215 114958346 -29324143 - FLAM_A SINE Alu -2 131 1 14195 116 20 33 chr12 114958346 114958668 -29323821 + Tigger1 DNA MER2_type 224 549 -1869 2239 98 3 19 chr12 114958668 114958983 -29323506 + AluSg SINE Alu 1 310 0 14195 116 20 33 chr12 114958983 114959512 -29322977 + Tigger1 DNA MER2_type 549 1083 -1335 2183 119 3 0 chr12 114959512 114959815 -29322674 + AluSx SINE Alu 1 304 -8 14195 116 20 33 chr12 114959815 114961189 -29321300 + Tigger1 DNA MER2_type 1083 2418 0 771 193 95 54 chr12 114961280 114961575 -29320914 + MER33 DNA MER1_type 18 324 0 250 224 17 0 chr12 114962060 114962118 -29320371 - LTR50 LTR ERVL -726 69 11 542 176 124 29 chr12 114962128 114962338 -29320151 - L1MD1 LINE L1 -2959 3187 2958 703 170 0 0 chr12 114962339 114962451 -29320038 + MER2 DNA MER2_type 1 112 -233 2164 124 0 0 chr12 114962481 114962779 -29319710 - AluSg SINE Alu -12 298 1 1365 155 0 23 chr12 114962948 114963167 -29319322 - AluJo SINE Alu -17 295 82 1485 152 0 9 chr12 114963297 114963527 -29318962 - AluJo SINE Alu -22 290 63 2118 123 0 0 chr12 114963631 114963949 -29318540 + AluSx SINE Alu 1 318 0 2604 251 81 14 chr12 114964223 114964960 -29317529 + L2 LINE L2 2191 2977 -337 625 275 103 30 chr12 114965061 114965401 -29317088 - MLT1H LTR MaLR -165 390 1 993 253 115 10 chr12 114965402 114965706 -29316783 + L2 LINE L2 2974 3309 -4 1793 167 10 29 chr12 114965902 114966214 -29316275 + AluSx SINE Alu 1 306 -6 207 114 0 0 chr12 114967016 114967051 -29315438 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1298 219 41 31 chr12 114967252 114967544 -29314945 + AluJo SINE Alu 1 295 -17 2221 100 107 63 chr12 114967979 114968389 -29314100 + MSTA LTR MaLR 1 428 0 394 311 27 34 chr12 114968402 114968550 -29313939 + MIR3 SINE MIR 19 165 -43 2251 107 3 3 chr12 114968606 114968905 -29313584 + AluSx SINE Alu 2 300 -12 578 241 102 51 chr12 114968948 114969242 -29313247 + L1MC4a LINE L1 5610 5918 -1890 219 218 0 0 chr12 114969299 114969354 -29313135 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 25 31 0 0 chr12 114969811 114969843 -29312646 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr12 114969945 114969967 -29312522 + AT_rich Low_complexity Low_complexity 1 22 0 999 157 56 30 chr12 114970874 114971072 -29311417 - MER3 DNA MER1_type -1 208 6 1505 166 111 7 chr12 114972011 114972282 -29310207 - AluJb SINE Alu -13 299 1 655 180 29 14 chr12 114973049 114973188 -29309301 + MIR SINE MIR 122 262 0 464 83 64 0 chr12 114973683 114973792 -29308697 + (TA)n Simple_repeat Simple_repeat 1 116 0 2038 125 3 10 chr12 114973848 114974137 -29308352 - AluSx SINE Alu -25 287 1 189 0 0 0 chr12 114974373 114974394 -29308095 + (T)n Simple_repeat Simple_repeat 1 21 0 326 250 70 0 chr12 114974408 114974508 -29307981 - MER20B DNA MER1_type -194 589 483 2086 226 21 88 chr12 114976065 114976687 -29305802 - MER20B DNA MER1_type -20 763 101 629 219 8 17 chr12 114976687 114976806 -29305683 - FLAM_A SINE Alu -14 119 2 2086 226 21 88 chr12 114976806 114976912 -29305577 - MER20B DNA MER1_type -682 101 90 1908 135 0 50 chr12 114976912 114977230 -29305259 + AluJb SINE Alu 1 302 -10 2086 226 21 88 chr12 114977230 114977297 -29305192 - MER20B DNA MER1_type -693 90 20 317 226 235 0 chr12 114977641 114977743 -29304746 + L2 LINE L2 3147 3272 0 213 313 241 30 chr12 114977838 114978004 -29304485 - MIR SINE MIR -42 220 20 243 259 116 18 chr12 114978178 114978290 -29304199 - MLT1I LTR MaLR -286 123 1 2509 194 58 14 chr12 114979108 114979525 -29302964 + L1MD3 LINE L1 7400 7850 -145 2417 87 3 0 chr12 114979525 114979837 -29302652 - AluSq SINE Alu 0 313 1 2509 194 58 14 chr12 114979837 114979990 -29302499 + L1MD3 LINE L1 7850 7995 0 183 42 0 0 chr12 114980109 114980133 -29302356 + (CA)n Simple_repeat Simple_repeat 2 25 0 1066 189 66 1 chr12 114980178 114980405 -29302084 + AluJb SINE Alu 1 275 -37 1754 266 83 39 chr12 114980460 114981452 -29301037 + L1MB1 LINE L1 3075 4109 -2037 769 160 237 21 chr12 114981485 114981545 -29300944 + MER46A DNA MER2_type 1 47 -2684 3260 171 19 22 chr12 114981545 114982182 -29300307 + MER41B LTR ERV1 1 635 0 769 160 237 21 chr12 114982182 114982315 -29300174 + MER46A DNA MER2_type 47 236 0 307 200 0 0 chr12 114982315 114982390 -29300099 + L1MB1 LINE L1 4145 4219 -1927 386 264 66 0 chr12 114982930 114983036 -29299453 - L2 LINE L2 -10 3303 3191 750 201 140 28 chr12 114983072 114983286 -29299203 - MIR SINE MIR -10 252 15 249 272 146 0 chr12 114983279 114983382 -29299107 - L2 LINE L2 -151 3162 3045 * 323 139 97 0 chr12 114983429 114983501 -29298988 + L2 LINE L2 2372 2450 -864 481 266 118 38 chr12 114983512 114983884 -29298605 - MLT1I LTR MaLR -7 402 1 1443 266 51 42 chr12 114983884 114984662 -29297827 + L2 LINE L2 2458 3241 -72 849 276 69 86 chr12 114984692 114984878 -29297611 - L2 LINE L2 -278 3035 2847 2061 106 4 0 chr12 114984878 114985152 -29297337 + AluSq SINE Alu 25 299 -14 849 276 69 86 chr12 114985152 114985301 -29297188 - L2 LINE L2 -466 2847 2697 243 0 0 0 chr12 114985301 114985328 -29297161 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1824 177 0 0 chr12 114985330 114985612 -29296877 - AluJo SINE Alu -30 282 1 849 276 69 86 chr12 114985612 114985806 -29296683 - L2 LINE L2 -617 2696 2514 320 292 85 0 chr12 114985812 114985942 -29296547 - L2 LINE L2 -1018 2296 2156 1125 265 76 12 chr12 114986253 114986580 -29295909 + L1M3d LINE L1 1 621 -5270 1211 118 0 6 chr12 114986581 114986751 -29295738 + AluSp SINE Alu 137 305 -8 3990 171 30 52 chr12 114986761 114987875 -29294614 + L1MB1 LINE L1 4964 6048 -120 2303 97 6 10 chr12 114987875 114988186 -29294303 - AluSg SINE Alu 0 310 1 3990 171 30 52 chr12 114988186 114988304 -29294185 + L1MB1 LINE L1 6048 6167 -1 708 181 9 0 chr12 114988536 114988652 -29293837 - FLAM_C SINE Alu -16 117 1 2803 215 80 14 chr12 114989450 114990190 -29292299 + L1MC4a LINE L1 6683 7471 -337 10884 168 34 46 chr12 114990210 114992205 -29290284 + L1M2a LINE L1 13 1983 -5185 3605 178 26 8 chr12 114992206 114992980 -29289509 + L1M2a LINE L1 2134 2921 -4247 953 144 0 0 chr12 114992981 114993120 -29289369 + AluSc SINE Alu 1 139 -170 1763 37 0 0 chr12 114993120 114993336 -29289153 - L1P LINE L1 -1015 5131 4916 1870 42 0 8 chr12 114993336 114993573 -29288916 + L1PA5 LINE L1 5916 6151 -3 1376 98 0 0 chr12 114993573 114993747 -29288742 + AluSc SINE Alu 124 297 -12 892 209 0 0 chr12 114993750 114993908 -29288581 + AluJo/FRAM SINE Alu 137 294 -8 3717 212 42 21 chr12 114993908 114995016 -29287473 + L1M2a LINE L1 2912 4057 -3110 2487 114 8 16 chr12 114995016 114995394 -29287095 + THE1C LTR MaLR 1 375 0 3717 212 42 21 chr12 114995394 114995627 -29286862 + L1M2a LINE L1 4057 4284 -2883 2120 120 0 3 chr12 114995691 114995983 -29286506 - AluSg SINE Alu -19 291 1 519 284 55 11 chr12 114996131 114996399 -29286090 - L1M3f LINE L1 -4164 1164 1021 328 256 106 50 chr12 114996419 114996599 -29285890 - L1MCb LINE L1 -4963 944 757 2003 143 0 10 chr12 114996979 114997279 -29285210 - AluSx SINE Alu -13 299 3 332 353 120 17 chr12 114997427 114997719 -29284770 - L2 LINE L2 -959 2355 2034 256 324 11 28 chr12 114997748 114997902 -29284587 + GA-rich Low_complexity Low_complexity 1 153 -26 2065 197 31 7 chr12 114997902 114998318 -29284171 + MSTB LTR MaLR 1 426 0 256 324 11 28 chr12 114998318 114998345 -29284144 + GA-rich Low_complexity Low_complexity 153 179 0 21 0 0 0 chr12 114999510 114999531 -29282958 + AT_rich Low_complexity Low_complexity 1 21 0 763 304 159 35 chr12 114999959 115000676 -29281813 - L2 LINE L2 0 3313 2508 238 283 90 38 chr12 115000728 115000927 -29281562 + L1MEd LINE L1 1306 1493 -4978 2321 92 0 3 chr12 115000927 115001221 -29281268 - AluSp SINE Alu -20 293 1 238 283 90 38 chr12 115001221 115001458 -29281031 + L1MEd LINE L1 1493 1954 -4517 310 261 153 33 chr12 115001512 115001727 -29280762 + L1MEd LINE L1 1856 2096 -4444 208 158 0 53 chr12 115001958 115002015 -29280474 + (TTAA)n Simple_repeat Simple_repeat 2 55 0 882 254 70 98 chr12 115002106 115003332 -29279157 + L1MEd LINE L1 2504 3695 -2845 528 178 178 0 chr12 115003335 115003442 -29279047 + AluJo SINE Alu 5 130 -172 330 292 68 99 chr12 115003670 115003862 -29278627 + L1MEd LINE L1 294 479 -5726 1419 117 38 5 chr12 115004071 115004284 -29278205 - MER30 DNA MER1_type 0 230 11 330 271 128 56 chr12 115004348 115004636 -29277853 + L1MEd LINE L1 1444 1752 -4644 951 174 0 0 chr12 115005185 115005334 -29277155 + AluJo SINE Alu 134 282 -30 1769 141 31 21 chr12 115005390 115005680 -29276809 + AluJo SINE Alu 11 303 -9 21 0 0 0 chr12 115005806 115005827 -29276662 + AT_rich Low_complexity Low_complexity 1 21 0 198 150 0 0 chr12 115005873 115005913 -29276576 + (CA)n Simple_repeat Simple_repeat 2 41 0 253 332 223 19 chr12 115006106 115006425 -29276064 + L3 LINE CR1 219 602 -975 247 327 69 10 chr12 115006563 115006664 -29275825 + MIR3 SINE MIR 85 191 -17 395 220 121 0 chr12 115006712 115006844 -29275645 + MER112 DNA MER1_type 80 227 -33 1765 166 14 17 chr12 115006857 115007153 -29275336 - AluJo SINE Alu -14 298 4 394 232 226 11 chr12 115007324 115007505 -29274984 + L3 LINE CR1 737 956 -621 429 259 59 47 chr12 115007731 115007790 -29274699 - MIR SINE MIR -44 218 161 1719 188 97 3 chr12 115007790 115008152 -29274337 + MSTD LTR MaLR 1 396 0 429 259 59 47 chr12 115008152 115008262 -29274227 - MIR SINE MIR -101 161 47 2216 74 51 0 chr12 115008312 115008608 -29273881 + AluY SINE Alu 1 311 0 35 63 0 0 chr12 115008754 115008817 -29273672 + AT_rich Low_complexity Low_complexity 1 63 0 2217 102 0 30 chr12 115008980 115009285 -29273204 - AluSx SINE Alu -16 296 1 1001 127 0 19 chr12 115009502 115009659 -29272830 + AluJb SINE Alu 159 312 0 196 313 188 9 chr12 115010807 115010919 -29271570 - L2 LINE L2 -779 2535 2404 2325 98 3 0 chr12 115011194 115011500 -29270989 - AluSq SINE Alu -6 307 1 210 350 20 30 chr12 115011555 115011655 -29270834 - MER5A DNA MER1_type -41 148 50 267 246 29 14 chr12 115011661 115011730 -29270759 + L1ME2 LINE L1 5997 6066 -98 * 556 170 38 0 chr12 115011726 115011832 -29270657 + L1MA7 LINE L1 5794 5903 -388 1429 168 78 3 chr12 115011832 115012154 -29270335 + L1MC/D LINE L1 5258 5603 -2439 274 225 69 62 chr12 115012539 115012618 -29269871 + HAL1b LINE L1 642 719 -629 1932 135 14 7 chr12 115012618 115012906 -29269583 + AluSx SINE Alu 1 290 -22 2244 112 0 7 chr12 115012914 115013218 -29269271 + AluSq SINE Alu 1 302 -11 274 225 69 62 chr12 115013218 115013289 -29269200 + HAL1b LINE L1 725 802 -546 479 223 194 5 chr12 115013843 115014049 -29268440 + HAL1b LINE L1 1018 1262 -86 1975 135 6 32 chr12 115014055 115014367 -29268122 - AluJb SINE Alu -8 304 1 1561 153 0 50 chr12 115014395 115014676 -29267813 - AluJb SINE Alu -8 304 38 800 226 103 10 chr12 115014711 115014906 -29267583 + MER58C DNA MER1_type 2 214 -1 786 214 161 0 chr12 115015646 115015838 -29266651 + MER58A DNA MER1_type 2 224 0 1927 144 7 7 chr12 115015909 115016201 -29266288 - AluSx SINE Alu -20 292 1 3603 162 72 35 chr12 115016202 115016830 -29265659 - L1MB5 LINE L1 -32 6142 5480 1469 69 0 0 chr12 115016830 115017005 -29265484 - AluY SINE Alu -14 297 123 3603 162 72 35 chr12 115017005 115017124 -29265365 - L1MB5 LINE L1 -694 5480 5367 580 82 13 56 chr12 115017130 115017378 -29265111 + (TA)n Simple_repeat Simple_repeat 1 237 0 563 317 97 28 chr12 115017403 115018003 -29264486 + L1ME3 LINE L1 5297 5937 -225 2197 80 0 14 chr12 115018270 115018607 -29263882 - AluY SINE Alu 0 333 1 508 285 180 10 chr12 115018663 115019022 -29263467 - L1M4 LINE L1 -1918 4228 3816 263 302 26 26 chr12 115019088 115019204 -29263285 - L1M4 LINE L1 -2525 3621 3506 317 274 92 12 chr12 115019250 115019414 -29263075 + L1M4 LINE L1 3207 3383 -2763 721 191 33 0 chr12 115020828 115020980 -29261509 - AluSg/x SINE Alu 0 312 156 375 296 107 38 chr12 115021096 115021255 -29261234 + L2 LINE L2 3101 3270 -2 466 338 71 71 chr12 115021857 115022165 -29260324 - L2 LINE L2 0 3272 2965 562 265 230 5 chr12 115022220 115022420 -29260069 + MIR SINE MIR 18 262 0 207 0 0 0 chr12 115023054 115023077 -29259412 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2132 109 3 0 chr12 115023093 115023416 -29259073 + AluSp SINE Alu 1 324 0 377 286 51 84 chr12 115024776 115024917 -29257572 - MIR3 SINE MIR -17 191 56 2174 122 0 13 chr12 115024917 115025229 -29257260 + AluSx SINE Alu 1 308 -4 377 286 51 84 chr12 115025229 115025265 -29257224 - MIR3 SINE MIR -152 56 20 517 319 103 26 chr12 115025344 115025576 -29256913 - MIR SINE MIR 0 262 13 416 269 90 42 chr12 115026880 115027047 -29255442 - MIR3 SINE MIR -2 206 32 2045 138 36 28 chr12 115027268 115027629 -29254860 + THE1B LTR MaLR 1 364 0 426 281 103 18 chr12 115027738 115028014 -29254475 - L2 LINE L2 -35 3278 2883 281 234 81 48 chr12 115028640 115028764 -29253725 + MIR SINE MIR 121 248 -14 530 197 31 31 chr12 115028821 115028948 -29253541 + MIR SINE MIR 63 189 -73 1903 186 35 30 chr12 115030088 115030460 -29252029 - MLT1A2 LTR MaLR 0 374 1 454 193 111 7 chr12 115030616 115030751 -29251738 + AluJb SINE Alu 4 152 -160 611 208 0 0 chr12 115030852 115030948 -29251541 + AluJb SINE Alu 110 205 -107 429 275 9 9 chr12 115031295 115031404 -29251085 - L2 LINE L2 -1 3312 3204 312 120 0 0 chr12 115031460 115031510 -29250979 - Alu SINE Alu -3 299 250 454 149 0 0 chr12 115031520 115031587 -29250902 + MSTA LTR MaLR 362 428 0 523 207 118 7 chr12 115031587 115031639 -29250850 - Ricksha DNA DNA -2841 405 339 14099 144 38 24 chr12 115031639 115033356 -29249133 - ERVL LTR ERVL 0 5764 4072 1981 88 35 21 chr12 115033356 115033639 -29248850 - AluSq SINE Alu -26 287 1 14099 144 38 24 chr12 115033639 115034086 -29248403 - ERVL LTR ERVL -1692 4072 3563 2099 134 0 0 chr12 115034086 115034384 -29248105 - AluSx SINE Alu -14 298 1 14099 144 38 24 chr12 115034384 115034583 -29247906 - ERVL LTR ERVL -2201 3563 3368 271 360 0 0 chr12 115034653 115034728 -29247761 - MIR SINE MIR -180 82 8 421 279 38 67 chr12 115034745 115035089 -29247400 - L1ME4a LINE L1 -225 5896 5563 471 251 34 56 chr12 115035510 115035750 -29246739 + MLT1L LTR MaLR 84 417 -198 774 209 16 42 chr12 115035841 115036032 -29246457 - MIR SINE MIR -20 242 57 220 246 169 0 chr12 115036049 115036114 -29246375 - MIR SINE MIR -180 82 7 289 267 68 9 chr12 115036321 115036576 -29245913 - AluSg/x SINE Alu -5 295 120 256 324 11 28 chr12 115036764 115036918 -29245571 + GA-rich Low_complexity Low_complexity 1 153 -26 2246 197 31 7 chr12 115036918 115037334 -29245155 + MSTB LTR MaLR 1 426 0 256 324 11 28 chr12 115037334 115037361 -29245128 + GA-rich Low_complexity Low_complexity 153 179 0 21 0 0 0 chr12 115038529 115038550 -29243939 + AT_rich Low_complexity Low_complexity 1 21 0 707 306 159 33 chr12 115038978 115039695 -29242794 - L2 LINE L2 0 3313 2508 367 270 191 43 chr12 115039707 115039937 -29242552 + L1MEd LINE L1 859 1122 -4997 2319 96 0 3 chr12 115039946 115040238 -29242251 - AluSp SINE Alu -20 293 3 180 0 0 0 chr12 115040478 115040498 -29241991 + (T)n Simple_repeat Simple_repeat 1 20 0 369 240 70 0 chr12 115040512 115040612 -29241877 - MER20B DNA MER1_type -194 589 483 182 304 43 0 chr12 115042265 115042334 -29240155 + L3 LINE CR1 370 441 -1136 2063 174 24 49 chr12 115042590 115043015 -29239474 + MLT2D LTR ERVL 1 414 0 2414 228 69 42 chr12 115043827 115044559 -29237930 - L2 LINE L2 -870 2444 1688 2204 106 0 0 chr12 115044559 115044861 -29237628 + AluSq SINE Alu 1 302 0 2414 228 69 42 chr12 115044861 115044898 -29237591 - L2 LINE L2 -1626 1688 1653 398 248 38 0 chr12 115044910 115045015 -29237474 - L1ME LINE L1 -320 5801 5693 260 202 65 55 chr12 115045042 115045170 -29237319 - MLT1K LTR MaLR -340 248 144 362 247 176 39 chr12 115045264 115045519 -29236970 - L1ME LINE L1 -412 5709 5420 333 0 0 0 chr12 115045714 115045751 -29236738 + (TTA)n Simple_repeat Simple_repeat 3 39 0 2580 42 0 0 chr12 115045751 115046040 -29236449 - L1PA5 LINE L1 -18 6136 5848 1784 108 123 4 chr12 115046694 115046971 -29235518 + AluY SINE Alu 1 310 -1 2028 185 81 79 chr12 115047063 115047582 -29234907 + MLT2B1 LTR ERVL 1 520 0 980 211 59 49 chr12 115047986 115048290 -29234199 - L1MC4a LINE L1 -1846 5962 5656 1258 237 101 50 chr12 115048297 115048636 -29233853 + L2 LINE L2 2705 3025 -288 1743 166 7 7 chr12 115048636 115048926 -29233563 - AluJb SINE Alu -22 290 1 1258 237 101 50 chr12 115048926 115049133 -29233356 + L2 LINE L2 3025 3276 -37 2197 151 27 3 chr12 115049133 115049465 -29233024 - MER2 DNA MER2_type -1 343 4 1258 237 101 50 chr12 115049465 115049506 -29232983 + L2 LINE L2 3276 3313 0 184 348 14 0 chr12 115049510 115049579 -29232910 + L2 LINE L2 3201 3270 -2 851 284 69 4 chr12 115050719 115050980 -29231509 + MLT1I LTR MaLR 115 392 -17 923 242 121 51 chr12 115051151 115051236 -29231253 + L1M4 LINE L1 2608 2686 -3460 695 194 7 50 chr12 115051236 115051375 -29231114 - FLAM_A SINE Alu 0 133 1 923 242 121 51 chr12 115051375 115051842 -29230647 + L1M4 LINE L1 2686 3199 -2947 296 313 75 34 chr12 115051977 115052124 -29230365 + L1ME3A LINE L1 5636 5788 -382 23 24 0 24 chr12 115052124 115052147 -29230342 + AT_rich Low_complexity Low_complexity 1 24 -16 722 168 0 7 chr12 115052147 115052284 -29230205 - L1MA7 LINE L1 -1 6290 6155 23 24 0 24 chr12 115052284 115052301 -29230188 + AT_rich Low_complexity Low_complexity 24 40 0 1574 129 17 0 chr12 115052313 115052545 -29229944 - AluSx SINE Alu -76 236 1 941 143 5 58 chr12 115052558 115052708 -29229781 - L1MA7 LINE L1 -235 6056 5916 3358 69 47 5 chr12 115052708 115053130 -29229359 - MLT2A1 LTR ERVL 0 444 5 941 143 5 58 chr12 115053130 115053168 -29229321 - L1MA7 LINE L1 -375 5916 5878 472 230 130 12 chr12 115053165 115053326 -29229163 + L1ME3A LINE L1 5786 5965 -205 * 241 304 0 0 chr12 115053757 115053813 -29228676 - L2 LINE L2 -289 3024 2969 322 291 120 48 chr12 115054236 115054505 -29227984 + L2 LINE L2 2623 2918 -396 2623 151 92 2 chr12 115054505 115054950 -29227539 - MER31A LTR ERV1 0 485 1 322 291 120 48 chr12 115054950 115054989 -29227500 + L2 LINE L2 2918 2953 -361 1004 303 62 21 chr12 115055158 115055627 -29226862 + MLT1L LTR MaLR 120 607 -8 574 280 108 9 chr12 115056549 115056763 -29225726 - MIR SINE MIR 0 262 28 877 320 71 27 chr12 115057516 115057994 -29224495 - LTR33 LTR ERVL -22 499 1 348 214 11 34 chr12 115058375 115058464 -29224025 + MLT1J1 LTR MaLR 63 149 -297 472 225 146 20 chr12 115058545 115058696 -29223793 + MLT1J2 LTR MaLR 263 432 -18 209 175 0 0 chr12 115059287 115059327 -29223162 + A-rich Low_complexity Low_complexity 1 40 0 259 187 107 40 chr12 115059939 115060014 -29222475 + MIR SINE MIR 91 170 -92 26 30 0 0 chr12 115060105 115060138 -29222351 + AT_rich Low_complexity Low_complexity 1 33 0 1418 180 46 42 chr12 115060143 115060426 -29222063 - LTR39 LTR ERV1 -160 623 340 199 154 0 0 chr12 115060510 115060549 -29221940 + A-rich Low_complexity Low_complexity 1 39 0 44 35 0 0 chr12 115060555 115060613 -29221876 + AT_rich Low_complexity Low_complexity 1 58 0 198 0 0 0 chr12 115060636 115060658 -29221831 + (A)n Simple_repeat Simple_repeat 1 22 0 617 229 25 0 chr12 115060743 115060861 -29221628 - FLAM_C SINE Alu -12 121 1 1449 83 56 5 chr12 115060861 115061077 -29221412 - LTR39 LTR ERV1 -556 227 1 723 258 75 96 chr12 115061463 115061784 -29220705 - MLT1J LTR MaLR -2 509 202 1725 156 4 11 chr12 115061784 115062060 -29220429 - AluJb SINE Alu -38 274 1 723 258 75 96 chr12 115062060 115062258 -29220231 - MLT1J LTR MaLR -309 202 1 608 324 159 28 chr12 115062514 115063160 -29219329 + L2 LINE L2 1840 2570 -744 344 272 58 0 chr12 115063730 115063833 -29218656 + L2 LINE L2 2188 2296 -1018 684 271 25 102 chr12 115063857 115064033 -29218456 + L2 LINE L2 2536 2682 -632 1826 177 0 0 chr12 115064033 115064344 -29218145 + AluJo SINE Alu 1 311 0 684 271 25 102 chr12 115064344 115064478 -29218011 + L2 LINE L2 2682 2825 -489 2162 114 7 0 chr12 115064493 115064790 -29217699 - AluSq SINE Alu -14 299 1 224 366 67 8 chr12 115064995 115065129 -29217360 + L2 LINE L2 3117 3258 -14 2255 118 0 3 chr12 115065455 115065768 -29216721 + AluSx SINE Alu 1 312 0 206 303 67 0 chr12 115066149 115066238 -29216251 + MIR SINE MIR 109 203 -59 437 217 61 24 chr12 115066435 115066630 -29215859 + MLT1E1 LTR MaLR 1 258 -396 482 175 7 119 chr12 115066633 115066776 -29215713 + MLT1E3 LTR MaLR 490 616 -8 25 0 0 0 chr12 115067676 115067701 -29214788 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr12 115068326 115068361 -29214128 + AT_rich Low_complexity Low_complexity 1 35 0 463 191 15 96 chr12 115069255 115069391 -29213098 - MLT1H LTR MaLR -204 345 221 518 322 93 0 chr12 115069562 115069776 -29212713 + L2 LINE L2 2126 2359 -955 334 235 105 117 chr12 115069959 115070568 -29211921 - L1MEc LINE L1 -3435 2780 2179 208 158 0 53 chr12 115070659 115070716 -29211773 + (TTAA)n Simple_repeat Simple_repeat 2 55 0 395 320 146 12 chr12 115070947 115071440 -29211049 - L1MEc LINE L1 -4584 1812 1254 2136 128 3 13 chr12 115071453 115071759 -29210730 + AluSx SINE Alu 1 303 -9 2509 154 46 2 chr12 115071805 115072215 -29210274 + MSTA LTR MaLR 1 428 0 216 67 0 0 chr12 115072272 115072302 -29210187 + (CA)n Simple_repeat Simple_repeat 2 31 0 404 257 115 27 chr12 115073076 115073224 -29209265 + MIR SINE MIR 52 212 -50 292 220 0 0 chr12 115073743 115073793 -29208696 - MIR3 SINE MIR -48 160 111 453 230 66 38 chr12 115073988 115074171 -29208318 - MLT1J LTR MaLR -332 179 1 250 156 0 0 chr12 115074171 115074216 -29208273 + L2 LINE L2 3266 3310 -3 194 286 77 77 chr12 115074242 115074311 -29208178 - MIR SINE MIR -102 106 35 2138 141 68 8 chr12 115074311 115074665 -29207824 - THE1C LTR MaLR 0 375 1 194 286 77 77 chr12 115074665 115074686 -29207803 - MIR SINE MIR -172 36 16 301 314 39 39 chr12 115075327 115075480 -29207009 + MIR3 SINE MIR 30 182 -26 241 308 32 32 chr12 115075685 115075841 -29206648 - L1ME4a LINE L1 -193 5928 5773 1437 290 71 16 chr12 115075841 115076581 -29205908 + L2 LINE L2 2453 3231 -82 195 255 39 0 chr12 115076723 115076774 -29205715 + MIR SINE MIR 203 255 -7 1251 176 0 5 chr12 115077154 115077358 -29205131 - AluJo SINE Alu -25 287 85 546 257 217 6 chr12 115078128 115078303 -29204186 + MIR SINE MIR 40 251 -11 285 175 0 37 chr12 115078332 115078409 -29204080 + MIR SINE MIR 91 145 -63 241 109 36 0 chr12 115078483 115078538 -29203951 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 363 121 0 0 chr12 115078539 115078597 -29203892 + (TC)n Simple_repeat Simple_repeat 1 58 0 197 287 70 89 chr12 115078728 115078885 -29203604 - L2 LINE L2 -2 3311 3158 244 304 99 12 chr12 115078895 115079056 -29203433 + L2 LINE L2 2500 2674 -640 241 222 0 19 chr12 115079966 115080020 -29202469 - MIR3 SINE MIR -2 206 154 2367 103 0 0 chr12 115080041 115080351 -29202138 + AluSq SINE Alu 1 310 -3 639 282 128 31 chr12 115080978 115081361 -29201128 - L2 LINE L2 -596 2718 2299 2097 250 79 21 chr12 115081487 115082144 -29200345 - L2 LINE L2 -460 2854 2160 2105 127 0 0 chr12 115082384 115082702 -29199787 - AluSx SINE Alu 0 318 1 1436 161 0 9 chr12 115082806 115083036 -29199453 + AluJo SINE Alu 63 290 -22 1456 111 5 28 chr12 115083173 115083389 -29199100 + AluSc SINE Alu 87 297 -12 1103 155 0 0 chr12 115083389 115083550 -29198939 + AluSg/x SINE Alu 134 294 -18 1323 201 46 13 chr12 115083550 115083984 -29198505 + L1M2 LINE L1 2593 3036 -3812 399 299 71 8 chr12 115084174 115084301 -29198188 + L2 LINE L2 3179 3313 0 343 339 79 6 chr12 115085114 115085291 -29197198 + MIR3 SINE MIR 16 205 -3 606 110 11 0 chr12 115085615 115085706 -29196783 - L1MA4 LINE L1 -11 6289 6198 3286 153 4 10 chr12 115085735 115086257 -29196232 + LTR44 LTR ERV1 1 519 0 8670 98 9 2 chr12 115086438 115087699 -29194790 - L1P LINE L1 -2552 3594 2325 318 254 15 0 chr12 115087709 115087776 -29194713 - MST-int LTR MaLR -1582 69 2 567 252 0 0 chr12 115087785 115087888 -29194601 - MSTB1 LTR MaLR -329 103 1 746 199 15 0 chr12 115087888 115088024 -29194465 - MLT1A1 LTR MaLR -227 138 1 449 270 98 37 chr12 115088098 115088313 -29194176 - L2 LINE L2 -14 3299 3072 184 244 0 24 chr12 115088342 115088383 -29194106 + L2 LINE L2 3252 3291 -22 271 283 0 101 chr12 115088892 115089030 -29193459 + L2 LINE L2 1774 1897 -1417 368 240 149 23 chr12 115089353 115089528 -29192961 + HAL1b LINE L1 1066 1262 -86 1927 133 7 36 chr12 115089540 115089848 -29192641 - AluJb SINE Alu -13 299 1 1568 153 0 50 chr12 115089876 115090157 -29192332 - AluJb SINE Alu -8 304 38 812 214 107 11 chr12 115090200 115090387 -29192102 + MER58C DNA MER1_type 10 214 -1 543 247 167 16 chr12 115091127 115091313 -29191176 + MER58A DNA MER1_type 2 215 -9 352 181 32 53 chr12 115091569 115091663 -29190826 + Charlie5 DNA MER1_type 2490 2581 -31 269 236 28 28 chr12 115092744 115092816 -29189673 + MLT1H LTR MaLR 1 72 -477 1577 199 14 0 chr12 115093001 115093288 -29189201 - ERVL LTR ERVL -2441 3323 3033 666 247 6 0 chr12 115093296 115093458 -29189031 - MLT2B1 LTR ERVL -357 163 1 605 213 164 0 chr12 115093458 115093577 -29188912 + MLT1D LTR MaLR 333 471 -34 899 299 178 28 chr12 115093648 115094056 -29188433 - L2 LINE L2 -654 2660 2315 2411 77 0 0 chr12 115094056 115094353 -29188136 + AluY SINE Alu 1 297 -14 899 299 178 28 chr12 115094353 115094623 -29187866 - L2 LINE L2 -999 2315 1880 391 255 230 25 chr12 115094774 115094996 -29187493 - L2 LINE L2 -270 3043 2791 2129 131 3 0 chr12 115095103 115095400 -29187089 - AluSx SINE Alu -14 298 1 22 0 0 0 chr12 115096249 115096271 -29186218 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 115096354 115096377 -29186112 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 115096453 115096474 -29186015 + GC_rich Low_complexity Low_complexity 1 21 0 211 270 0 0 chr12 115096479 115096516 -29185973 + C-rich Low_complexity Low_complexity 2 38 0 326 306 118 16 chr12 115096709 115096964 -29185525 - MSTB LTR MaLR -132 294 14 1361 221 36 11 chr12 115097032 115097312 -29185177 - AluJo SINE Alu -15 287 1 2397 209 44 4 chr12 115097312 115097766 -29184723 - MSTB-int LTR MaLR -29 1622 1151 897 223 12 0 chr12 115097803 115097969 -29184520 - MST-int LTR MaLR -333 1318 1151 412 149 0 23 chr12 115098009 115098096 -29184393 + (TTTTC)n Simple_repeat Simple_repeat 2 86 0 595 218 115 0 chr12 115098160 115098316 -29184173 - MST-int LTR MaLR -510 1141 968 235 314 39 10 chr12 115098665 115098785 -29183704 - MIR SINE MIR -68 140 33 294 297 0 0 chr12 115098961 115099035 -29183454 - L2 LINE L2 0 3272 3199 523 209 170 26 chr12 115099114 115099267 -29183222 + MLT1J2 LTR MaLR 1 175 -275 289 279 231 30 chr12 115099897 115100166 -29182323 + L2 LINE L2 2804 3126 -187 349 289 20 86 chr12 115100173 115100325 -29182164 - MIR SINE MIR -19 243 102 236 341 131 33 chr12 115100372 115100586 -29181903 + L2 LINE L2 3030 3264 -8 194 279 75 122 chr12 115101129 115101276 -29181213 + MIR3 SINE MIR 5 144 -64 379 322 42 0 chr12 115101416 115101559 -29180930 + MIR SINE MIR 102 250 -12 453 62 0 0 chr12 115102503 115102568 -29179921 + (CA)n Simple_repeat Simple_repeat 2 66 0 1744 181 7 0 chr12 115102777 115103069 -29179420 - AluJo SINE Alu -18 294 1 2672 140 9 82 chr12 115103765 115104315 -29178174 - L1MB8 LINE L1 -95 6083 5574 335 132 15 0 chr12 115104477 115104545 -29177944 + GA-rich Low_complexity Low_complexity 1 69 0 1713 150 3 44 chr12 115104608 115104902 -29177587 + AluJb SINE Alu 1 282 -30 246 62 0 0 chr12 115104908 115104940 -29177549 + (TA)n Simple_repeat Simple_repeat 1 32 0 188 290 23 107 chr12 115105067 115105163 -29177326 - MIR SINE MIR -27 235 151 2058 120 3 10 chr12 115105163 115105464 -29177025 - AluSx SINE Alu -13 299 1 188 290 23 107 chr12 115105464 115105498 -29176991 - MIR SINE MIR -111 151 116 55 16 0 0 chr12 115105646 115105708 -29176781 + AT_rich Low_complexity Low_complexity 1 62 0 594 217 75 97 chr12 115105737 115106004 -29176485 - MIR SINE MIR 0 262 2 21 57 0 0 chr12 115106140 115106175 -29176314 + AT_rich Low_complexity Low_complexity 1 35 0 432 0 0 0 chr12 115106606 115106654 -29175835 + (CA)n Simple_repeat Simple_repeat 1 48 0 1462 194 82 3 chr12 115107118 115107412 -29175077 + MSTB LTR MaLR 106 422 -4 1127 161 117 5 chr12 115107415 115107620 -29174869 + MLT1A1 LTR MaLR 133 360 -5 2297 180 23 7 chr12 115107736 115108163 -29174326 - L1MB7 LINE L1 -90 6094 5661 582 168 7 58 chr12 115108241 115108396 -29174093 - FRAM SINE Alu 0 176 30 2362 219 50 150 chr12 115108906 115109068 -29173421 + L2 LINE L2 1841 2017 -1296 2047 107 3 13 chr12 115109068 115109367 -29173122 - AluSx SINE Alu 0 312 17 2362 219 50 150 chr12 115109367 115110037 -29172452 + L2 LINE L2 2017 2446 -867 1814 121 67 21 chr12 115110037 115110319 -29172170 - AluSg SINE Alu -15 295 1 2362 219 50 150 chr12 115110319 115111100 -29171389 + L2 LINE L2 2446 3303 -10 383 220 83 46 chr12 115113476 115113585 -29168904 - L2 LINE L2 -4 3309 3197 206 346 40 10 chr12 115113678 115113779 -29168710 + L2 LINE L2 2993 3096 -176 188 313 54 62 chr12 115113886 115113998 -29168491 + L2 LINE L2 3137 3247 -25 192 77 0 0 chr12 115114003 115114029 -29168460 + (TGAG)n Simple_repeat Simple_repeat 1 26 0 1762 205 134 24 chr12 115114084 115114503 -29167986 + MLT1C LTR MaLR 3 467 0 2978 96 0 3 chr12 115114641 115115017 -29167472 + THE1C LTR MaLR 1 375 0 10957 105 38 33 chr12 115115017 115116590 -29165899 + THE1C-int LTR MaLR 1 1580 0 2057 140 6 12 chr12 115116590 115116932 -29165557 + THE1C LTR MaLR 1 340 -35 714 168 34 0 chr12 115117072 115117191 -29165298 - FLAM_C SINE Alu -9 124 2 198 258 73 113 chr12 115117230 115117381 -29165108 + L2 LINE L2 3113 3257 -56 979 198 6 6 chr12 115117462 115117644 -29164845 + LTR41 LTR ERVL 1 182 -591 453 252 76 69 chr12 115117915 115118177 -29164312 + LTR41 LTR ERVL 510 773 0 372 241 59 24 chr12 115119748 115119884 -29162605 - MLT1K LTR MaLR -2 586 469 246 184 0 0 chr12 115119906 115119955 -29162534 - L2 LINE L2 -35 3237 3189 716 198 15 5 chr12 115119968 115120104 -29162385 + MLT1G1 LTR MaLR 403 581 -14 941 174 152 131 chr12 115120127 115120569 -29161920 - LTR49 LTR ERV1 0 595 145 466 286 93 0 chr12 115120687 115120869 -29161620 + LTR33A LTR ERVL 325 523 0 425 216 45 0 chr12 115120899 115120987 -29161502 - MIR SINE MIR -88 174 83 24 32 0 0 chr12 115121030 115121061 -29161428 + AT_rich Low_complexity Low_complexity 1 31 0 1826 148 22 0 chr12 115121071 115121341 -29161148 - AluJo SINE Alu -36 276 1 22 0 0 0 chr12 115121344 115121366 -29161123 + AT_rich Low_complexity Low_complexity 1 22 0 609 201 97 0 chr12 115121392 115121536 -29160953 + L1ME3A LINE L1 6008 6165 -5 247 298 75 0 chr12 115121706 115121800 -29160689 - L2 LINE L2 -36 3277 3177 1093 68 0 0 chr12 115122224 115122356 -29160133 - AluY SINE Alu -11 300 169 4661 118 5 2 chr12 115122527 115123160 -29159329 + MER41B LTR ERV1 1 635 0 32 57 0 0 chr12 115124368 115124421 -29158068 + AT_rich Low_complexity Low_complexity 1 53 0 1176 184 17 4 chr12 115126152 115126385 -29156104 + MER33 DNA MER1_type 1 236 -88 2410 169 5 21 chr12 115126386 115126572 -29155917 + L1MC3 LINE L1 7241 7429 -356 2732 106 8 3 chr12 115126572 115126931 -29155558 + THE1B LTR MaLR 3 363 -1 2410 169 5 21 chr12 115126931 115127175 -29155314 + L1MC3 LINE L1 7429 7664 -121 795 208 0 62 chr12 115127215 115127393 -29155096 - AluJo SINE Alu -22 290 124 203 323 40 10 chr12 115127532 115127631 -29154858 - L2 LINE L2 -1212 2102 2001 565 203 8 0 chr12 115127962 115128095 -29154394 + LTR37A LTR ERV1 290 423 -3 182 310 0 56 chr12 115128529 115128600 -29153889 + MIR SINE MIR 45 111 -97 9145 88 18 2 chr12 115128719 115129979 -29152510 - L1P LINE L1 -894 5252 3972 816 224 24 5 chr12 115130083 115130288 -29152201 + LTR37A LTR ERV1 197 405 -21 514 153 0 0 chr12 115130298 115130370 -29152119 + AluJ/FRAM SINE Alu 221 292 -20 554 263 58 23 chr12 115130688 115130859 -29151630 - MIR3 SINE MIR -11 197 21 29 0 0 0 chr12 115131107 115131136 -29151353 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr12 115181634 115181661 -29100828 + (T)n Simple_repeat Simple_repeat 1 27 0 516 287 7 0 chr12 115181673 115181809 -29100680 + MIR SINE MIR 125 261 -1 2410 94 0 0 chr12 115181958 115182265 -29100224 + AluSx SINE Alu 1 307 -5 3090 138 13 48 chr12 115182558 115183103 -29099386 + LTR26B LTR ERV1 1 526 -5 25 51 0 0 chr12 115183150 115183189 -29099300 + AT_rich Low_complexity Low_complexity 1 39 0 2282 231 50 67 chr12 115183191 115183666 -29098823 - L1ME3A LINE L1 -11 6159 5699 4411 24 10 0 chr12 115183666 115184157 -29098332 - L1PA4 LINE L1 -8 6147 5652 2282 231 50 67 chr12 115184157 115184398 -29098091 - L1ME3A LINE L1 -471 5699 5455 2146 127 0 16 chr12 115184419 115184734 -29097755 - AluSx SINE Alu -1 311 2 2201 179 7 21 chr12 115184896 115185333 -29097156 - L1MB8 LINE L1 -1 6177 5747 21 0 0 0 chr12 115185461 115185482 -29097007 + AT_rich Low_complexity Low_complexity 1 21 0 2194 103 3 0 chr12 115185482 115185774 -29096715 + AluSg SINE Alu 1 293 -17 999 159 34 67 chr12 115186339 115186547 -29095942 + MER20 DNA MER1_type 1 201 -18 195 42 0 0 chr12 115186634 115186658 -29095831 + (TC)n Simple_repeat Simple_repeat 1 24 0 278 282 191 9 chr12 115187036 115187146 -29095343 + L2 LINE L2 3141 3270 -2 975 151 10 47 chr12 115187697 115187889 -29094600 + MLT1B LTR MaLR 1 185 -205 1998 135 21 44 chr12 115187922 115188262 -29094227 + MER65C LTR ERV1 1 332 -129 2306 108 15 3 chr12 115188269 115188601 -29093888 + MER65C LTR ERV1 126 461 0 1268 165 0 5 chr12 115188601 115188797 -29093692 + MLT1B LTR MaLR 196 390 0 35803 33 7 0 chr12 115189036 115194045 -29088444 + L1PA4 LINE L1 1114 6151 -4 736 200 11 58 chr12 115194383 115194573 -29087916 + L1ME3A LINE L1 5795 5975 -195 1696 195 38 69 chr12 115194577 115195053 -29087436 - MLT1C LTR MaLR 0 467 7 698 220 44 28 chr12 115195061 115195243 -29087246 + L1ME3A LINE L1 5978 6162 -8 516 235 124 60 chr12 115195664 115195881 -29086608 + MIR SINE MIR 32 262 0 1761 199 25 25 chr12 115196708 115197104 -29085385 - MSTD LTR MaLR 0 396 1 523 275 88 12 chr12 115197384 115197555 -29084934 + MIR SINE MIR 74 257 -5 270 116 0 0 chr12 115197696 115197739 -29084750 + (TG)n Simple_repeat Simple_repeat 2 44 0 3363 196 12 36 chr12 115197757 115198325 -29084164 - L1MB3 LINE L1 -11 6172 5623 2296 107 0 0 chr12 115198325 115198623 -29083866 - AluSx SINE Alu -14 298 1 3363 196 12 36 chr12 115198623 115198773 -29083716 - L1MB3 LINE L1 -560 5623 5471 1413 223 38 19 chr12 115198784 115199152 -29083337 + MLT2D LTR ERVL 1 474 -46 559 26 26 0 chr12 115199152 115199229 -29083260 + (TCTA)n Simple_repeat Simple_repeat 1 79 0 364 113 38 0 chr12 115199338 115199418 -29083071 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 947 210 52 35 chr12 115199542 115199771 -29082718 - MIR SINE MIR -10 252 20 1355 108 0 0 chr12 115200364 115200540 -29081949 - AluSc SINE Alu -2 307 132 2204 103 20 0 chr12 115200554 115200855 -29081634 - AluSc SINE Alu -2 307 1 261 0 0 0 chr12 115200863 115200892 -29081597 + (T)n Simple_repeat Simple_repeat 1 29 0 226 341 0 0 chr12 115201186 115201268 -29081221 - MIR3 SINE MIR -15 193 112 199 341 126 23 chr12 115201360 115201574 -29080915 + L3 LINE CR1 733 968 -609 269 292 204 51 chr12 115201834 115202011 -29080478 + L3 LINE CR1 1009 1158 -419 4113 92 22 27 chr12 115202011 115202599 -29079890 - L1MA3 LINE L1 -2 6303 5719 269 292 204 51 chr12 115202599 115202695 -29079794 + L3 LINE CR1 1158 1324 -253 245 295 0 0 chr12 115202817 115202878 -29079611 + L3 LINE CR1 1429 1489 -88 720 206 0 15 chr12 115203190 115203321 -29079168 - FLAM_C SINE Alu -4 129 1 501 262 9 98 chr12 115204094 115204308 -29078181 - MIR SINE MIR 0 262 68 322 225 45 63 chr12 115204852 115204963 -29077526 + MIR SINE MIR 52 160 -102 286 204 117 48 chr12 115204965 115205068 -29077421 + MIR SINE MIR 95 204 -58 641 143 0 0 chr12 115205339 115205423 -29077066 - FLAM SINE Alu -20 123 40 665 226 83 104 chr12 115205428 115205620 -29076869 - L1ME4a LINE L1 -1 6120 5925 2271 104 0 7 chr12 115205620 115205918 -29076571 - AluSg SINE Alu -14 296 1 665 226 83 104 chr12 115205918 115206282 -29076207 - L1ME4a LINE L1 -196 5925 5576 * 3337 221 40 33 chr12 115206268 115207048 -29075441 - L1ME1 LINE L1 -31 6135 5330 2101 130 0 0 chr12 115207048 115207341 -29075148 - AluSc SINE Alu -16 293 1 3337 221 40 33 chr12 115207341 115207480 -29075009 - L1ME1 LINE L1 -836 5330 5194 796 149 4 140 chr12 115207479 115207714 -29074775 - L1ME1 LINE L1 -1724 4422 4220 * 4044 169 33 15 chr12 115207717 115208383 -29074106 - L1MB5 LINE L1 0 6174 5491 2146 146 3 0 chr12 115208383 115208691 -29073798 - AluSq SINE Alu -4 309 1 4044 169 33 15 chr12 115208691 115208776 -29073713 - L1MB5 LINE L1 -683 5491 5409 1000 268 56 56 chr12 115208795 115209292 -29073197 - L1M4 LINE L1 -4299 2839 2343 1034 172 0 0 chr12 115209292 115209449 -29073040 - FRAM SINE Alu -21 155 1 892 250 19 8 chr12 115209449 115209712 -29072777 - L1M4 LINE L1 -4765 2194 1929 325 271 39 8 chr12 115210042 115210171 -29072318 - L1M4 LINE L1 -6661 198 66 2082 106 0 68 chr12 115210254 115210575 -29071914 - AluSx SINE Alu -13 299 1 591 294 27 14 chr12 115210576 115210803 -29071686 - L1ME LINE L1 -514 5607 5388 273 220 101 9 chr12 115211351 115211460 -29071029 - L1ME4a LINE L1 0 6121 6003 27 0 0 26 chr12 115211551 115211569 -29070920 + AT_rich Low_complexity Low_complexity 1 18 -19 198 0 0 0 chr12 115211569 115211591 -29070898 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 27 0 0 26 chr12 115211591 115211610 -29070879 + AT_rich Low_complexity Low_complexity 18 37 0 29 47 0 0 chr12 115211940 115211983 -29070506 + AT_rich Low_complexity Low_complexity 1 43 0 300 244 122 0 chr12 115212231 115212313 -29070176 - MER5C DNA MER1_type 0 324 233 280 255 194 0 chr12 115212341 115212439 -29070050 - MER5C DNA MER1_type -202 122 6 258 233 0 0 chr12 115212499 115212542 -29069947 + MER63 DNA MER1_type 1 43 -887 5007 60 206 26 chr12 115212547 115213247 -29069242 + LTR12 LTR ERV1 1 826 0 20628 92 41 19 chr12 115213247 115215475 -29067014 + HERV9 LTR ERV1 1 2308 -6091 7574 58 1 0 chr12 115215475 115217103 -29065386 + L1PA5 LINE L1 4536 6151 -3 20628 92 41 19 chr12 115217103 115217783 -29064706 + HERV9 LTR ERV1 2308 2972 -5427 17695 75 4 11 chr12 115217781 115220131 -29062358 + HERV9 LTR ERV1 6068 8399 0 * 6100 62 90 28 chr12 115220131 115220909 -29061580 + LTR12 LTR ERV1 1 826 0 328 205 39 126 chr12 115220913 115221040 -29061449 + MER63 DNA MER1_type 689 804 -256 412 299 31 0 chr12 115221182 115221309 -29061180 + LTR67 LTR ERVL 40 170 -387 410 148 46 83 chr12 115221538 115221594 -29060895 + LTR67 LTR ERVL 454 506 -51 3150 122 26 13 chr12 115221594 115222062 -29060427 + MER101 LTR ERV1 1 474 0 410 148 46 83 chr12 115222062 115222113 -29060376 + LTR67 LTR ERVL 506 557 0 3335 150 27 40 chr12 115222136 115222762 -29059727 - L1MB8 LINE L1 -5 6173 5556 827 153 13 38 chr12 115222762 115222919 -29059570 + FRAM SINE Alu 23 175 -1 353 268 106 28 chr12 115222958 115223100 -29059389 + L3 LINE CR1 1342 1494 -83 1064 144 39 6 chr12 115223818 115223998 -29058491 + AluSg/x SINE Alu 122 307 -3 310 284 0 14 chr12 115224023 115224097 -29058392 - MIR SINE MIR -170 92 20 338 247 11 11 chr12 115224219 115224308 -29058181 - MLT1J LTR MaLR -33 478 390 2146 119 0 19 chr12 115224470 115224788 -29057701 + AluSx SINE Alu 1 312 0 382 192 77 0 chr12 115225150 115225228 -29057261 - MIR SINE MIR -66 142 59 252 86 0 0 chr12 115225289 115225324 -29057165 + (T)n Simple_repeat Simple_repeat 1 35 0 2029 124 0 3 chr12 115225409 115225717 -29056772 - AluSx SINE Alu 0 309 3 1451 82 0 5 chr12 115226508 115226692 -29055797 + AluSx SINE Alu 1 183 -129 300 96 19 0 chr12 115226692 115226744 -29055745 + AluSp/q SINE Alu 251 303 0 330 313 61 30 chr12 115227060 115227258 -29055231 + L1ME4a LINE L1 5747 5950 -171 1930 129 18 4 chr12 115227372 115227691 -29054798 - AluSq SINE Alu 0 323 1 1625 82 23 5 chr12 115227834 115228053 -29054436 + AluSg/x SINE Alu 74 296 -16 2107 115 0 3 chr12 115228055 115228372 -29054117 + AluSg SINE Alu 1 316 0 703 159 0 0 chr12 115228374 115228481 -29054008 + AluJo/FRAM SINE Alu 131 237 -75 227 130 0 22 chr12 115228571 115228617 -29053872 + (GGA)n Simple_repeat Simple_repeat 1 45 0 1520 187 27 23 chr12 115229356 115229656 -29052833 + AluJo SINE Alu 1 301 -11 598 298 105 18 chr12 115229855 115230083 -29052406 + MIR SINE MIR 8 255 -7 466 100 71 0 chr12 115230233 115230303 -29052186 + MER5A DNA MER1_type 1 75 -114 1243 118 163 0 chr12 115230304 115230507 -29051982 + AluSg/x SINE Alu 74 309 -3 430 208 13 0 chr12 115230508 115230585 -29051904 + MER5A DNA MER1_type 62 139 -50 280 160 0 20 chr12 115230638 115230688 -29051801 + MER5A DNA MER1_type 140 188 -1 213 175 0 0 chr12 115231386 115231426 -29051063 + CT-rich Low_complexity Low_complexity 2 41 0 1444 239 50 33 chr12 115231886 115232284 -29050205 - MLT1I LTR MaLR 0 409 5 304 251 241 43 chr12 115232285 115232472 -29050017 - MIR SINE MIR -36 226 3 288 255 28 28 chr12 115232497 115232603 -29049886 - MIR SINE MIR -14 248 143 897 268 55 8 chr12 115233528 115233763 -29048726 - MIR SINE MIR -11 251 6 337 361 67 6 chr12 115233786 115233966 -29048523 + L3 LINE CR1 986 1176 -401 653 259 110 22 chr12 115233967 115234195 -29048294 - MIR SINE MIR 0 262 15 344 179 95 0 chr12 115234238 115234322 -29048167 - MER5A DNA MER1_type -84 105 14 308 316 20 59 chr12 115234362 115234514 -29047975 + L3 LINE CR1 1175 1320 -257 440 340 184 18 chr12 115234533 115235151 -29047338 + L2 LINE L2 2245 2965 -349 1020 125 46 0 chr12 115235356 115235508 -29046981 - AluSg/x SINE Alu -19 293 135 1153 281 94 65 chr12 115235589 115236174 -29046315 + L2 LINE L2 2445 3070 -243 1082 195 6 0 chr12 115236174 115236348 -29046141 + FAM SINE Alu 1 175 0 1153 281 94 65 chr12 115236348 115236591 -29045898 + L2 LINE L2 3070 3305 -8 432 318 50 23 chr12 115236602 115236822 -29045667 + L3 LINE CR1 1323 1548 -29 267 230 100 40 chr12 115237000 115237100 -29045389 - L1ME4a LINE L1 -49 6072 5967 503 233 171 36 chr12 115237140 115237525 -29044964 - MLT1F1 LTR MaLR 0 584 140 252 356 40 10 chr12 115237587 115237688 -29044801 - L2 LINE L2 -1 3271 3168 345 227 27 0 chr12 115237813 115237888 -29044601 + MIR SINE MIR 180 256 -6 535 291 166 7 chr12 115237900 115238317 -29044172 + LTR33A LTR ERVL 1 509 -14 1580 159 19 15 chr12 115238337 115238607 -29043882 + AluJb SINE Alu 18 288 -24 681 235 49 19 chr12 115238623 115238785 -29043704 - MIR SINE MIR -63 199 33 239 351 42 36 chr12 115241335 115241500 -29040989 + L2 LINE L2 2896 3061 -211 903 183 56 6 chr12 115241504 115241684 -29040805 + MER53 DNA DNA 1 189 0 542 246 51 37 chr12 115242057 115242272 -29040217 - MIR SINE MIR -14 248 31 1056 257 63 41 chr12 115242372 115242831 -29039658 - MLT1J LTR MaLR -42 469 1 672 286 76 93 chr12 115243011 115243378 -29039111 + LTR67 LTR ERVL 2 362 -195 456 317 53 47 chr12 115243388 115243724 -29038765 + MLT1H LTR MaLR 1 301 -108 511 250 53 26 chr12 115244032 115244184 -29038305 + LTR67 LTR ERVL 398 553 -4 364 291 65 12 chr12 115244431 115244570 -29037919 + MIR SINE MIR 16 154 -70 242 323 72 12 chr12 115244706 115244873 -29037616 + L1ME4a LINE L1 5941 6117 -4 321 93 0 0 chr12 115245562 115245616 -29036873 + (GA)n Simple_repeat Simple_repeat 1 54 0 250 258 15 0 chr12 115245667 115245733 -29036756 - L2 LINE L2 -5 3267 3201 757 271 71 12 chr12 115245806 115246046 -29036443 - MIR SINE MIR -8 254 1 392 282 48 34 chr12 115246046 115246248 -29036241 - L2 LINE L2 -171 3101 2897 632 320 32 16 chr12 115246605 115246855 -29035634 + MIR SINE MIR 9 262 0 1051 291 92 27 chr12 115246881 115247327 -29035162 - L2 LINE L2 -3 3310 2836 589 283 129 13 chr12 115247342 115247575 -29034914 - MIR SINE MIR 0 262 3 378 151 0 0 chr12 115247637 115247710 -29034779 + (TG)n Simple_repeat Simple_repeat 1 73 0 1095 231 20 20 chr12 115247913 115248164 -29034325 + MIR SINE MIR 2 252 -10 1304 236 211 21 chr12 115248318 115248793 -29033696 + L2 LINE L2 680 1244 -2070 633 241 68 11 chr12 115248807 115248998 -29033491 + L2 LINE L2 1495 1696 -1618 828 199 137 97 chr12 115249070 115249150 -29033339 - MLT1F LTR MaLR -123 419 344 324 0 0 0 chr12 115249150 115249186 -29033303 + (CA)n Simple_repeat Simple_repeat 1 36 0 828 199 137 97 chr12 115249186 115249399 -29033090 - MLT1F LTR MaLR -198 344 103 3920 141 54 6 chr12 115249399 115250031 -29032458 + L1MB3 LINE L1 5512 6173 -10 828 199 137 97 chr12 115250031 115250139 -29032350 - MLT1F LTR MaLR -439 103 1 2135 142 0 0 chr12 115250161 115250471 -29032018 - AluSx SINE Alu 0 312 3 1755 200 84 68 chr12 115250507 115251108 -29031381 + MLT1E1 LTR MaLR 1 652 -2 3549 247 65 49 chr12 115251109 115252622 -29029867 + L2 LINE L2 1775 3304 -9 241 264 47 94 chr12 115252603 115252709 -29029780 - L2 LINE L2 -10 3303 3203 * 462 310 14 18 chr12 115252726 115252907 -29029582 + MER5A DNA MER1_type 4 175 -3 202 171 24 0 chr12 115252974 115253015 -29029474 + MIR SINE MIR 91 132 -76 2499 79 0 0 chr12 115253175 115253480 -29029009 - AluY SINE Alu -6 305 1 265 280 85 17 chr12 115253738 115253856 -29028633 + MIR SINE MIR 28 153 -109 1659 259 98 48 chr12 115254036 115254111 -29028378 - L1MC4 LINE L1 -1 8041 7971 2115 203 82 52 chr12 115254111 115254649 -29027840 - MLT2B3 LTR ERVL 0 554 1 1659 259 98 48 chr12 115254649 115254689 -29027800 - L1MC4 LINE L1 -71 7971 7934 432 0 0 0 chr12 115254689 115254737 -29027752 + (CA)n Simple_repeat Simple_repeat 2 49 0 1659 259 98 48 chr12 115254737 115255403 -29027086 - L1MC4 LINE L1 -108 7934 7220 195 239 34 11 chr12 115255498 115255586 -29026903 + CT-rich Low_complexity Low_complexity 4 93 0 583 233 27 43 chr12 115255586 115255767 -29026722 - MLT1E2 LTR MaLR -212 414 206 374 156 86 94 chr12 115255924 115256052 -29026437 + MER106B DNA MER1_type 903 1029 -30 2420 118 13 55 chr12 115256299 115256679 -29025810 + THE1B LTR MaLR 1 364 0 795 244 113 4 chr12 115256704 115256934 -29025555 + MIR SINE MIR 8 262 0 26 30 0 0 chr12 115257840 115257873 -29024616 + AT_rich Low_complexity Low_complexity 1 33 0 1545 141 25 116 chr12 115257994 115258314 -29024175 + AluJo SINE Alu 1 291 -21 333 318 105 63 chr12 115258368 115258701 -29023788 - MLT1K LTR MaLR -111 477 131 1780 163 76 17 chr12 115259719 115260054 -29022435 + MLT1A1 LTR MaLR 5 365 0 6167 194 42 31 chr12 115260516 115260784 -29021705 + Charlie1a DNA MER1_type 1 265 -2496 2018 119 17 3 chr12 115260784 115261078 -29021411 + AluSx SINE Alu 15 312 0 6167 194 42 31 chr12 115261078 115261141 -29021348 + Charlie1a DNA MER1_type 265 326 -2435 2094 107 17 0 chr12 115261141 115261430 -29021059 - AluSc SINE Alu -15 294 1 6167 194 42 31 chr12 115261430 115262260 -29020229 + Charlie1a DNA MER1_type 326 1183 -1578 1605 91 9 0 chr12 115262260 115262470 -29020019 - AluSq SINE Alu -2 311 100 6167 194 42 31 chr12 115262470 115262746 -29019743 + Charlie1a DNA MER1_type 1183 1455 0 248 51 0 26 chr12 115263101 115263140 -29019349 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 2080 17 0 0 chr12 115263140 115263372 -29019117 - L1PA4 LINE L1 -24 6131 5900 3412 23 0 0 chr12 115263373 115263766 -29018723 + L1P LINE L1 4898 5290 -856 2300 93 0 7 chr12 115263792 115264093 -29018396 + AluY SINE Alu 1 299 -12 394 262 92 0 chr12 115264154 115264272 -29018217 + MIR SINE MIR 37 164 -63 192 97 0 0 chr12 115264334 115264365 -29018124 + (CAT)n Simple_repeat Simple_repeat 1 31 0 248 250 17 0 chr12 115265313 115265373 -29017116 - MLT1K LTR MaLR -4 584 524 841 284 47 4 chr12 115265458 115265694 -29016795 + MIR SINE MIR 15 260 -2 21 0 0 0 chr12 115265762 115265783 -29016706 + AT_rich Low_complexity Low_complexity 1 21 0 2260 118 0 9 chr12 115265783 115266098 -29016391 + AluSx SINE Alu 1 312 0 3889 262 72 48 chr12 115266513 115267393 -29015096 + L1ME3A LINE L1 711 1569 -4646 2057 124 0 0 chr12 115267393 115267676 -29014813 + AluSx SINE Alu 1 283 -29 3889 262 72 48 chr12 115267676 115269642 -29012847 + L1ME3A LINE L1 1569 3579 -2636 1795 232 120 25 chr12 115269640 115270200 -29012289 + L1ME3A LINE L1 5627 6239 0 * 2192 271 75 11 chr12 115270303 115270946 -29011543 - MER115 DNA AcHobo -1 692 9 209 171 0 0 chr12 115270994 115271029 -29011460 + GA-rich Low_complexity Low_complexity 2 36 0 257 261 109 59 chr12 115271102 115271221 -29011268 + L2 LINE L2 3185 3309 -4 246 224 138 0 chr12 115271578 115271636 -29010853 - MIR SINE MIR -57 151 86 184 317 0 0 chr12 115271747 115271788 -29010701 - MER5A DNA MER1_type 0 189 149 234 184 0 0 chr12 115271801 115271839 -29010650 - MER5B DNA MER1_type -140 38 1 184 266 68 113 chr12 115272563 115272740 -29009749 - L2 LINE L2 -138 3134 2966 398 347 48 7 chr12 115273292 115273439 -29009050 + MIR SINE MIR 32 184 -78 528 147 0 0 chr12 115274163 115274238 -29008251 - 5S rRNA rRNA -33 88 14 216 275 0 0 chr12 115274534 115274683 -29007806 + GA-rich Low_complexity Low_complexity 1 149 0 1602 172 69 3 chr12 115276421 115276712 -29005777 + AluSx SINE Alu 3 312 0 396 40 0 0 chr12 115276732 115276782 -29005707 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 32 67 0 0 chr12 115277196 115277256 -29005233 + AT_rich Low_complexity Low_complexity 1 60 0 494 358 0 6 chr12 115277301 115277474 -29005015 - MIR3 SINE MIR -7 201 30 323 331 69 28 chr12 115279299 115279444 -29003045 - L3 LINE CR1 -2 1575 1425 222 37 0 0 chr12 115279445 115279472 -29003017 + (CACAG)n Simple_repeat Simple_repeat 1 27 0 303 374 30 8 chr12 115280068 115280199 -29002290 - L3 LINE CR1 -940 637 504 497 323 24 6 chr12 115280266 115280433 -29002056 + MIR SINE MIR 35 204 -58 634 361 21 0 chr12 115280447 115280688 -29001801 + MIR SINE MIR 3 248 -14 265 260 130 13 chr12 115280760 115280837 -29001652 - L3 LINE CR1 -1165 412 327 2328 104 7 0 chr12 115281294 115281601 -29000888 + AluSq SINE Alu 5 313 0 722 254 83 77 chr12 115281628 115282135 -29000354 + L1ME4a LINE L1 5566 6075 -46 1749 220 118 45 chr12 115282245 115282735 -28999754 + MLT1E LTR MaLR 68 593 0 2419 239 102 24 chr12 115282747 115282923 -28999566 - Zaphod DNA AcHobo -3133 898 737 1965 133 0 14 chr12 115282923 115283208 -28999281 + AluSx SINE Alu 1 340 0 511 17 0 0 chr12 115283208 115283267 -28999222 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 2419 239 102 24 chr12 115283267 115283852 -28998637 - Zaphod DNA AcHobo -3294 737 76 1994 132 3 3 chr12 115283875 115284179 -28998310 - AluSx SINE Alu -7 305 2 998 116 7 7 chr12 115284228 115284374 -28998115 - THE1C LTR MaLR -229 146 1 4062 104 4 7 chr12 115284374 115284923 -28997566 - THE1C-int LTR MaLR 0 1580 1034 2921 106 72 98 chr12 115284925 115285463 -28997026 - THE1C-int LTR MaLR -1056 524 1 1855 152 37 35 chr12 115285463 115285837 -28996652 - THE1C LTR MaLR 0 375 1 835 281 28 60 chr12 115286646 115287045 -28995444 + MLT1J2 LTR MaLR 65 450 0 257 285 103 118 chr12 115287045 115287308 -28995181 + L2 LINE L2 2996 3254 -18 649 256 102 71 chr12 115287430 115287879 -28994610 + MLT1J LTR MaLR 11 473 -38 479 242 107 62 chr12 115288131 115288375 -28994114 - MIR SINE MIR -7 255 1 240 242 15 0 chr12 115288495 115288561 -28993928 - MLT1K LTR MaLR 0 588 522 303 242 0 15 chr12 115288785 115288851 -28993638 - MLT1K LTR MaLR -333 255 191 3741 140 48 28 chr12 115289212 115289821 -28992668 + MER4D LTR ERV1 1 625 -278 2157 113 3 0 chr12 115289821 115290123 -28992366 - AluSx SINE Alu -9 303 1 3741 140 48 28 chr12 115290123 115290163 -28992326 + MER4D LTR ERV1 625 663 -240 586 265 168 59 chr12 115290181 115290622 -28991867 - MLT1L LTR MaLR -92 523 35 319 280 8 45 chr12 115290679 115290811 -28991678 + L2 LINE L2 3161 3287 -26 356 311 74 37 chr12 115290949 115291139 -28991350 - L2 LINE L2 -1 3271 3075 1087 169 53 83 chr12 115291224 115291525 -28990964 + AluJo SINE Alu 12 303 -9 307 271 78 54 chr12 115291559 115291688 -28990801 - MIR SINE MIR -83 179 48 363 213 0 0 chr12 115292382 115292462 -28990027 + CT-rich Low_complexity Low_complexity 1 80 0 1993 138 7 0 chr12 115292464 115292768 -28989721 - AluSx SINE Alu -6 306 1 945 201 34 30 chr12 115293152 115293415 -28989074 - AluJo SINE Alu -17 295 32 193 370 0 0 chr12 115293837 115293910 -28988579 - L2 LINE L2 -5 3308 3236 725 275 61 48 chr12 115293933 115294338 -28988151 + MLT1H LTR MaLR 30 549 0 255 369 24 12 chr12 115294341 115294425 -28988064 - L2 LINE L2 -71 3201 3117 296 321 57 7 chr12 115295069 115295209 -28987280 + MIR SINE MIR 3 149 -113 955 269 131 80 chr12 115295213 115295603 -28986886 + MLT1J2 LTR MaLR 1 406 -3 2233 154 37 26 chr12 115295873 115296416 -28986073 + MLT2A2 LTR ERVL 1 552 -2 973 259 34 4 chr12 115296798 115297060 -28985429 + MER102b DNA MER1_type 71 340 -1 410 371 81 50 chr12 115297164 115297248 -28985241 - L2 LINE L2 -1 3271 3191 1822 159 0 0 chr12 115297248 115297531 -28984958 + AluSx SINE Alu 1 283 -29 239 54 27 0 chr12 115297535 115297572 -28984917 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 410 371 81 50 chr12 115297572 115298321 -28984168 - L2 LINE L2 -83 3189 2396 2245 96 3 0 chr12 115298337 115298638 -28983851 - AluSc SINE Alu -7 302 1 434 329 94 12 chr12 115299217 115299387 -28983102 - MIR SINE MIR -56 206 23 669 251 143 57 chr12 115299504 115299966 -28982523 - MLT1H LTR MaLR -16 533 1 767 294 148 19 chr12 115300050 115300567 -28981922 + L2 LINE L2 2743 3313 0 2170 120 0 3 chr12 115300621 115300930 -28981559 - AluSg SINE Alu -2 308 1 499 212 108 13 chr12 115301203 115301356 -28981133 + MIR SINE MIR 23 190 -62 278 226 48 0 chr12 115301813 115301875 -28980614 - MIR3 SINE MIR -46 162 98 396 0 0 0 chr12 115301914 115301958 -28980531 + (TG)n Simple_repeat Simple_repeat 2 45 0 973 260 74 9 chr12 115301981 115302304 -28980185 - Tigger8 DNA MER2_type -91 575 232 1744 255 32 91 chr12 115302347 115302919 -28979570 - MER69 DNA AcHobo -1826 700 181 2854 55 0 0 chr12 115302919 115303264 -28979225 - L1PA5 LINE L1 -3 6151 5807 1744 255 32 91 chr12 115303264 115303435 -28979054 - MER69 DNA AcHobo -2345 181 1 234 250 0 0 chr12 115303554 115303602 -28978887 + MER58A DNA MER1_type 1 48 -176 854 204 29 29 chr12 115304162 115304368 -28978121 + L2 LINE L2 2605 2810 -504 876 229 40 36 chr12 115304368 115304591 -28977898 + MER58A DNA MER1_type 1 224 0 1051 283 76 55 chr12 115304617 115304700 -28977789 + L2 LINE L2 2817 2897 -416 1440 109 4 50 chr12 115304700 115304938 -28977551 - MER30 DNA MER1_type -2 228 2 1051 283 76 55 chr12 115304938 115305341 -28977148 + L2 LINE L2 2897 3313 0 489 278 61 77 chr12 115305396 115305774 -28976715 - MLT1J LTR MaLR -111 400 29 254 302 35 23 chr12 115305980 115306066 -28976423 + L2 LINE L2 3186 3272 0 254 314 128 66 chr12 115306143 115306369 -28976120 - MIR SINE MIR -12 250 11 325 170 0 0 chr12 115306374 115306427 -28976062 - L2 LINE L2 0 3313 3261 481 168 53 11 chr12 115306802 115306897 -28975592 - LTR67 LTR ERVL -2 555 457 831 291 60 44 chr12 115307059 115307444 -28975045 - MLT1I LTR MaLR -18 391 1 1813 220 107 22 chr12 115307941 115308469 -28974020 + MLT1F1 LTR MaLR 1 567 0 186 239 227 11 chr12 115308473 115308561 -28973928 - L2 LINE L2 -1 3312 3206 288 284 17 0 chr12 115308561 115308677 -28973812 + MER103 DNA DNA 33 150 -16 240 286 57 0 chr12 115308890 115308960 -28973529 - L2 LINE L2 -4 3268 3195 380 306 148 32 chr12 115309630 115309908 -28972581 + L1ME4a LINE L1 4995 5304 -842 604 264 150 0 chr12 115309925 115310092 -28972397 + MIR SINE MIR 68 259 -3 667 283 63 52 chr12 115310092 115310459 -28972030 + L1ME4a LINE L1 5455 5825 -296 488 188 194 88 chr12 115310470 115310789 -28971700 + L1MC4 LINE L1 7690 8042 0 181 250 0 23 chr12 115310909 115310953 -28971536 - L2 LINE L2 -20 3252 3210 * 316 333 88 37 chr12 115310925 115311141 -28971348 - MIR SINE MIR -29 233 7 244 312 54 21 chr12 115311320 115311413 -28971076 - L2 LINE L2 -241 3031 2936 191 389 7 22 chr12 115311575 115311714 -28970775 - L2 LINE L2 -612 2702 2566 1355 248 37 77 chr12 115311807 115312226 -28970263 + LTR33A LTR ERVL 2 397 -126 2156 112 0 0 chr12 115312226 115312521 -28969968 - AluSx SINE Alu -17 295 1 1355 248 37 77 chr12 115312521 115312637 -28969852 + LTR33A LTR ERVL 397 516 -7 207 255 0 0 chr12 115312895 115312942 -28969547 - L2 LINE L2 0 3313 3267 377 328 92 37 chr12 115313127 115313398 -28969091 - L2 LINE L2 0 3313 3028 592 263 34 34 chr12 115313586 115313765 -28968724 + MLT1I LTR MaLR 1 179 -230 1653 104 0 0 chr12 115313982 115314204 -28968285 + AluSq SINE Alu 1 222 -91 396 231 0 44 chr12 115314223 115314314 -28968175 - MLT1I LTR MaLR -230 179 93 513 165 0 29 chr12 115314314 115314417 -28968072 + AluSg/x SINE Alu 201 300 -10 322 223 157 25 chr12 115314886 115315007 -28967482 - MIR SINE MIR 0 262 126 228 91 114 0 chr12 115315013 115315057 -28967432 + MADE1 DNA Mariner 32 80 0 929 129 26 19 chr12 115315435 115315590 -28966899 + FRAM SINE Alu 1 151 -25 22 0 0 0 chr12 115316064 115316086 -28966403 + AT_rich Low_complexity Low_complexity 1 22 0 2352 130 28 0 chr12 115316160 115316514 -28965975 - THE1B LTR MaLR 0 364 1 342 272 85 67 chr12 115316517 115316637 -28965852 + L1ME4a LINE L1 5681 5797 -324 363 44 0 0 chr12 115316637 115316682 -28965807 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 0 0 0 chr12 115316681 115316708 -28965781 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 342 272 85 67 chr12 115316682 115316962 -28965527 + L1ME4a LINE L1 5797 6062 -59 293 279 29 0 chr12 115317248 115317316 -28965173 - L2 LINE L2 -211 3061 2992 399 315 20 96 chr12 115317397 115317648 -28964841 - MIR SINE MIR -2 260 29 212 228 80 130 chr12 115317750 115317912 -28964577 - L2 LINE L2 -1084 2230 2077 * 291 328 51 56 chr12 115317903 115318098 -28964391 - L2 LINE L2 -219 3053 2860 189 222 0 0 chr12 115318140 115318203 -28964286 + (TG)n Simple_repeat Simple_repeat 2 64 0 1182 119 0 71 chr12 115318234 115318444 -28964045 - L1M2 LINE L1 -618 5694 5500 5736 130 15 18 chr12 115318834 115319479 -28963010 - L1MA9 LINE L1 -5 6307 5664 2118 132 0 0 chr12 115319479 115319789 -28962700 - AluSx SINE Alu -2 310 1 5736 130 15 18 chr12 115319789 115320087 -28962402 - L1MA9 LINE L1 -648 5664 5367 299 246 180 48 chr12 115320131 115320359 -28962130 - L2 LINE L2 -1 3271 3014 21 0 0 0 chr12 115321145 115321166 -28961323 + AT_rich Low_complexity Low_complexity 1 21 0 219 290 9 9 chr12 115322666 115322773 -28959716 + (CGG)n Simple_repeat Simple_repeat 3 109 0 * 236 169 28 42 chr12 115322725 115322796 -28959693 + (CCG)n Simple_repeat Simple_repeat 2 71 0 292 254 0 0 chr12 115324118 115324189 -28958300 + (TG)n Simple_repeat Simple_repeat 1 71 0 252 0 0 0 chr12 115324447 115324475 -28958014 + (CA)n Simple_repeat Simple_repeat 1 28 0 524 245 19 32 chr12 115324771 115324926 -28957563 + MIR3 SINE MIR 34 186 -22 379 226 321 0 chr12 115325559 115325665 -28956824 - MIR SINE MIR -118 144 5 193 298 53 43 chr12 115325800 115325894 -28956595 + L2 LINE L2 3170 3264 -8 725 150 31 16 chr12 115325978 115326105 -28956384 - FLAM_A SINE Alu 0 142 14 248 281 146 12 chr12 115326481 115326563 -28955926 + L2 LINE L2 2928 3020 -252 280 209 11 121 chr12 115326627 115326718 -28955771 + L2 LINE L2 3188 3268 -4 702 273 100 22 chr12 115326773 115327004 -28955485 + MIR SINE MIR 13 261 -1 473 214 0 0 chr12 115327227 115327311 -28955178 + FLAM SINE Alu 38 121 -22 217 0 61 0 chr12 115327311 115327344 -28955145 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 279 110 3 0 chr12 115327472 115327516 -28954973 - AluSq/x SINE Alu -188 115 78 270 161 0 18 chr12 115327518 115327574 -28954915 + L1ME3 LINE L1 6108 6162 0 260 204 68 199 chr12 115327738 115327914 -28954575 + MIR SINE MIR 95 247 -15 231 196 39 27 chr12 115328599 115328674 -28953815 + MIR SINE MIR 87 168 -40 * 284 170 113 28 chr12 115328658 115328764 -28953725 - MIR SINE MIR -1 261 147 2039 113 3 0 chr12 115328764 115329048 -28953441 - AluSq SINE Alu -28 285 1 519 275 68 68 chr12 115329082 115329362 -28953127 - MLT1J1 LTR MaLR -52 394 115 689 271 203 9 chr12 115330606 115330927 -28951562 - MLT1J1 LTR MaLR 0 446 64 641 228 29 0 chr12 115331003 115331139 -28951350 - MIR SINE MIR -85 177 38 251 296 80 11 chr12 115331142 115331230 -28951259 + MIR SINE MIR 159 252 -10 598 323 85 5 chr12 115331416 115331617 -28950872 - MIR SINE MIR -32 230 14 890 289 4 33 chr12 115332086 115332328 -28950161 + MIR SINE MIR 27 261 -1 512 266 283 0 chr12 115332442 115332615 -28949874 + MIR SINE MIR 40 261 -1 394 292 145 60 chr12 115332648 115333226 -28949263 - L2 LINE L2 -55 3217 2609 366 304 9 18 chr12 115333208 115333358 -28949131 - MIR SINE MIR -62 146 19 * 537 234 89 9 chr12 115333380 115333536 -28948953 - MIR3 SINE MIR -41 167 1 212 339 39 47 chr12 115334080 115334207 -28948282 - L2 LINE L2 -30 3242 3117 243 280 67 0 chr12 115334994 115335069 -28947420 + MIR SINE MIR 80 159 -103 545 248 101 7 chr12 115335218 115335367 -28947122 - MIR SINE MIR -91 171 9 226 344 21 11 chr12 115335473 115335566 -28946923 - MIR SINE MIR -142 120 27 495 258 58 32 chr12 115336278 115336467 -28946022 + MIR SINE MIR 20 211 -51 2983 250 107 19 chr12 115336497 115337751 -28944738 - L2 LINE L2 -2 3311 1961 2137 153 0 3 chr12 115337847 115338160 -28944329 + AluJo SINE Alu 1 312 0 599 232 165 18 chr12 115339212 115339436 -28943053 + MIR SINE MIR 6 262 0 228 229 148 0 chr12 115339535 115339596 -28942893 + L2 LINE L2 3242 3311 -2 441 222 28 28 chr12 115339601 115339709 -28942780 + L2 LINE L2 3192 3299 -14 180 341 47 24 chr12 115340048 115340133 -28942356 - MIR SINE MIR -66 142 56 378 296 79 16 chr12 115340319 115340508 -28941981 - MIR SINE MIR -26 236 36 191 170 106 0 chr12 115340787 115340834 -28941655 - L2 LINE L2 0 3313 3262 407 228 108 42 chr12 115341181 115341348 -28941141 - MIR SINE MIR -65 197 20 965 203 6 0 chr12 115341670 115341833 -28940656 - FAM SINE Alu -11 164 1 281 169 17 0 chr12 115342507 115342566 -28939923 + (TG)n Simple_repeat Simple_repeat 1 60 0 207 301 145 0 chr12 115343743 115343826 -28938663 - L2 LINE L2 -22 3250 3156 219 143 0 0 chr12 115344312 115344347 -28938142 + MIR SINE MIR 115 149 -59 2137 154 93 18 chr12 115344531 115344928 -28937561 + MSTA LTR MaLR 1 427 -1 219 281 16 16 chr12 115345782 115345846 -28936643 + L2 LINE L2 3126 3189 -83 1840 181 3 16 chr12 115345848 115346157 -28936332 - AluJo SINE Alu -7 305 1 1114 234 43 90 chr12 115346358 115346473 -28936016 - MLT1J LTR MaLR -18 493 374 1972 155 21 39 chr12 115346473 115346854 -28935635 - THE1C LTR MaLR 0 375 2 1114 234 43 90 chr12 115346854 115347229 -28935260 - MLT1J LTR MaLR -137 374 26 428 197 25 74 chr12 115348287 115348409 -28934080 - MLT1K LTR MaLR -11 577 462 488 330 17 22 chr12 115348742 115348921 -28933568 - MIR SINE MIR -38 224 47 2155 114 0 7 chr12 115349311 115349600 -28932889 - AluSc SINE Alu -20 289 3 232 203 72 14 chr12 115350053 115350122 -28932367 - L2 LINE L2 -7 3306 3234 21 36 0 0 chr12 115350137 115350165 -28932324 + AT_rich Low_complexity Low_complexity 1 28 0 447 169 153 24 chr12 115350197 115350321 -28932168 - MLT1G1 LTR MaLR -2 553 414 505 248 121 10 chr12 115350404 115350700 -28931789 - MLT1G1 LTR MaLR -302 288 1 303 203 0 0 chr12 115351045 115351119 -28931370 + (TA)n Simple_repeat Simple_repeat 1 74 0 237 65 0 0 chr12 115351128 115351159 -28931330 + (CA)n Simple_repeat Simple_repeat 2 32 0 685 263 181 51 chr12 115351184 115351297 -28931192 - L2 LINE L2 -2 3311 3214 1748 147 46 11 chr12 115351297 115351582 -28930907 + AluJb SINE Alu 2 296 -16 685 263 181 51 chr12 115351582 115351822 -28930667 - L2 LINE L2 -99 3214 2912 210 71 0 0 chr12 115352282 115352310 -28930179 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 495 223 119 4 chr12 115352320 115352470 -28930019 + MIR SINE MIR 24 192 -63 568 142 277 0 chr12 115352484 115352632 -28929857 + MER53 DNA DNA 1 189 0 2249 65 28 10 chr12 115353113 115353404 -28929085 + AluY SINE Alu 1 296 -15 272 313 156 36 chr12 115353972 115354196 -28928293 - MIR SINE MIR -10 252 2 284 197 26 111 chr12 115354280 115354305 -28928184 + MIR SINE MIR 42 68 -140 1863 174 115 6 chr12 115354305 115354662 -28927827 + MSTD LTR MaLR 1 396 0 284 197 26 111 chr12 115354662 115354753 -28927736 + MIR SINE MIR 68 148 -60 431 291 123 68 chr12 115354862 115355350 -28927139 - L2 LINE L2 -18 3254 2740 400 335 159 6 chr12 115355350 115355520 -28926969 + MER91A DNA MER1_type 1 196 0 779 225 60 11 chr12 115356421 115356603 -28925886 - MER117 DNA MER1_type -3 194 4 607 262 231 38 chr12 115357175 115357562 -28924927 + L2 LINE L2 2792 3271 -42 1345 132 47 19 chr12 115357562 115357775 -28924714 - MER20 DNA MER1_type 0 219 1 607 262 231 38 chr12 115357775 115357829 -28924660 + L2 LINE L2 3271 3313 0 305 280 32 32 chr12 115358128 115358221 -28924268 + MIR SINE MIR 169 261 -1 397 302 14 36 chr12 115358286 115358425 -28924064 - MIR3 SINE MIR -54 154 19 1842 186 0 7 chr12 115359777 115360065 -28922424 + AluJb SINE Alu 1 288 -24 396 0 0 0 chr12 115360065 115360109 -28922380 + (CAT)n Simple_repeat Simple_repeat 2 45 0 1842 186 0 7 chr12 115360109 115360127 -28922362 + AluJb SINE Alu 288 305 -7 231 251 22 153 chr12 115360198 115360381 -28922108 + MIR3 SINE MIR 42 200 -8 776 284 125 31 chr12 115360476 115361020 -28921469 + L2 LINE L2 2726 3313 0 193 245 75 0 chr12 115361201 115361254 -28921235 + MIR3 SINE MIR 152 208 0 312 215 298 78 chr12 115361386 115361591 -28920898 - MIR SINE MIR 0 262 13 1399 294 9 29 chr12 115361654 115362031 -28920458 + LTR16A LTR ERVL 7 390 -60 189 0 0 0 chr12 115362031 115362052 -28920437 + (GA)n Simple_repeat Simple_repeat 1 21 0 324 0 0 0 chr12 115362057 115362093 -28920396 + (TG)n Simple_repeat Simple_repeat 2 37 0 1399 294 9 29 chr12 115362093 115362158 -28920331 + LTR16A LTR ERVL 394 446 -4 723 278 41 10 chr12 115362992 115363186 -28919303 - MIR SINE MIR -3 259 60 659 243 95 33 chr12 115363634 115363877 -28918612 + MIR SINE MIR 2 259 -3 2640 110 3 6 chr12 115363906 115364271 -28918218 + THE1B LTR MaLR 1 364 0 184 311 123 19 chr12 115364322 115364428 -28918061 - L2 LINE L2 -1 3271 3155 258 265 83 38 chr12 115364464 115364596 -28917893 + MIR SINE MIR 38 175 -87 193 245 75 0 chr12 115364652 115364705 -28917784 + MIR3 SINE MIR 152 208 0 237 190 52 69 chr12 115365166 115365224 -28917265 - MIR SINE MIR -68 140 89 274 220 77 44 chr12 115365594 115365685 -28916804 + Charlie7 DNA MER1_type 2519 2612 0 534 237 124 40 chr12 115365701 115365950 -28916539 + L2 LINE L2 3044 3313 0 275 327 210 8 chr12 115366023 115366271 -28916218 - L2 LINE L2 -165 3107 2810 944 237 40 12 chr12 115366346 115366599 -28915890 + MIR SINE MIR 2 261 -1 487 280 168 36 chr12 115366600 115366850 -28915639 - L2 LINE L2 -4 3309 3027 1237 59 0 0 chr12 115367048 115367218 -28915271 - L1P LINE L1 -1740 4406 4237 2860 51 0 6 chr12 115367218 115367568 -28914921 + L1PA7 LINE L1 5807 6154 0 983 266 52 20 chr12 115367993 115368245 -28914244 + MIR SINE MIR 2 261 -1 184 289 67 39 chr12 115368290 115368394 -28914095 + MIR SINE MIR 156 262 0 488 336 136 14 chr12 115368766 115368986 -28913503 - MIR SINE MIR -6 256 10 1024 257 138 6 chr12 115369126 115369445 -28913044 - LTR16A LTR ERVL 0 450 90 506 245 78 59 chr12 115369777 115369981 -28912508 - L2 LINE L2 0 3313 3106 270 146 247 11 chr12 115370614 115370703 -28911786 + MIR SINE MIR 37 146 -62 564 286 132 45 chr12 115370745 115371102 -28911387 + L2 LINE L2 2920 3307 -6 348 24 0 0 chr12 115371534 115371575 -28910914 + (TG)n Simple_repeat Simple_repeat 1 41 0 2592 70 0 0 chr12 115371619 115371921 -28910568 - AluSq SINE Alu -11 302 1 511 286 53 23 chr12 115372048 115372219 -28910270 - L2 LINE L2 -10 3303 3128 228 262 0 33 chr12 115372269 115372330 -28910159 - L2 LINE L2 0 3272 3214 442 222 15 26 chr12 115372537 115372604 -28909885 + CT-rich Low_complexity Low_complexity 1 67 -656 2413 103 3 0 chr12 115372604 115372915 -28909574 - AluSx SINE Alu 0 312 1 442 222 15 26 chr12 115372915 115373269 -28909220 + CT-rich Low_complexity Low_complexity 67 723 0 241 236 18 0 chr12 115373409 115373464 -28909025 + MIR SINE MIR 189 244 -18 270 251 299 43 chr12 115373933 115374140 -28908349 - MIR SINE MIR -1 261 2 592 256 114 37 chr12 115374222 115374468 -28908021 - MLT1H1 LTR MaLR 0 555 291 426 79 0 0 chr12 115374478 115374541 -28907948 + (TG)n Simple_repeat Simple_repeat 2 64 0 299 262 12 12 chr12 115374724 115374808 -28907681 - MLT1F LTR MaLR -458 84 1 647 248 48 39 chr12 115374875 115375081 -28907408 - MIR SINE MIR -52 210 3 603 265 34 91 chr12 115375441 115375512 -28906977 - MIR SINE MIR -5 257 184 2320 125 0 0 chr12 115375512 115375815 -28906674 + AluSx SINE Alu 1 303 -9 603 265 34 91 chr12 115375815 115376007 -28906482 - MIR SINE MIR -78 184 9 268 308 110 0 chr12 115376187 115376278 -28906211 - MIR SINE MIR -66 142 42 187 100 25 25 chr12 115376465 115376505 -28905984 + (TG)n Simple_repeat Simple_repeat 1 40 0 536 319 101 5 chr12 115376584 115376791 -28905698 + MIR SINE MIR 24 250 -12 325 340 139 12 chr12 115377027 115377466 -28905023 + L2 LINE L2 2770 3267 -5 324 191 0 127 chr12 115378179 115378289 -28904200 + L2 LINE L2 3175 3270 -2 2408 92 0 0 chr12 115378293 115378598 -28903891 + AluY SINE Alu 1 305 -6 297 297 81 18 chr12 115378601 115378712 -28903777 - MIR SINE MIR -130 132 15 277 382 40 7 chr12 115378805 115378957 -28903532 - MIR SINE MIR -58 204 48 914 220 131 0 chr12 115379212 115379426 -28903063 + MIR SINE MIR 18 259 -3 246 253 0 58 chr12 115380441 115380528 -28901961 - MIR SINE MIR -116 146 65 325 294 150 0 chr12 115380972 115381115 -28901374 + MIR SINE MIR 39 206 -56 21 0 0 0 chr12 115381225 115381246 -28901243 + AT_rich Low_complexity Low_complexity 1 21 0 303 302 61 19 chr12 115381534 115381683 -28900806 - L1MB8 LINE L1 -205 5959 5804 663 307 80 38 chr12 115381765 115382112 -28900377 - L1MB8 LINE L1 -519 5651 5320 213 65 0 0 chr12 115382112 115382143 -28900346 + (TG)n Simple_repeat Simple_repeat 2 32 0 663 307 80 38 chr12 115382143 115382604 -28899885 - L1MB8 LINE L1 -850 5320 4806 2567 75 8 0 chr12 115384395 115384754 -28897735 - L1PA8 LINE L1 -208 5964 5603 473 262 87 0 chr12 115384839 115384965 -28897524 - MER5A DNA MER1_type -52 137 1 365 266 119 35 chr12 115385060 115385203 -28897286 + MIR SINE MIR 108 262 0 710 206 103 54 chr12 115386639 115386823 -28895666 - MIR SINE MIR -13 195 3 381 272 82 8 chr12 115386835 115386994 -28895495 + MIR SINE MIR 23 197 -65 323 325 53 16 chr12 115387619 115387815 -28894674 - MIR SINE MIR -14 248 42 278 221 117 48 chr12 115387972 115388117 -28894372 + MIR SINE MIR 98 252 -10 2445 103 0 0 chr12 115388395 115388707 -28893782 + AluSx SINE Alu 1 312 0 486 296 33 49 chr12 115389347 115389584 -28892905 - MIR SINE MIR -27 235 4 499 228 39 24 chr12 115389662 115389789 -28892700 + MER91C DNA MER1_type 9 137 -3 397 296 49 14 chr12 115390329 115390471 -28892018 + MIR3 SINE MIR 19 165 -43 793 207 87 58 chr12 115390512 115390754 -28891735 + MIR SINE MIR 2 250 -12 1044 170 0 24 chr12 115390797 115390962 -28891527 + FRAM SINE Alu 1 160 -16 610 203 86 61 chr12 115391130 115391327 -28891162 - L2 LINE L2 0 3313 3112 729 225 55 35 chr12 115391434 115391634 -28890855 + MIR SINE MIR 22 225 -37 691 205 73 7 chr12 115391637 115391788 -28890701 + MIR SINE MIR 81 241 -21 346 202 42 109 chr12 115391803 115391922 -28890567 - MLT1H LTR MaLR -9 546 436 575 253 90 36 chr12 115391976 115392253 -28890236 - MLT1H LTR MaLR -237 312 21 311 254 203 0 chr12 115393035 115393153 -28889336 - MIR SINE MIR -3 259 118 258 222 13 41 chr12 115393243 115393322 -28889167 + MIR SINE MIR 20 93 -115 408 344 126 16 chr12 115393328 115393575 -28888914 - L2 LINE L2 0 3272 2999 266 243 14 0 chr12 115393588 115393658 -28888831 + CT-rich Low_complexity Low_complexity 2 72 0 445 250 10 0 chr12 115393658 115393758 -28888731 + MLT1G3 LTR MaLR 153 253 -277 291 243 14 27 chr12 115393759 115393833 -28888656 - MER45A DNA AcHobo 0 178 106 2710 93 61 2 chr12 115393833 115394386 -28888103 + L1PA10 LINE L1 5525 6167 -1 650 219 0 34 chr12 115394414 115394560 -28887929 - MER45A DNA AcHobo -35 143 3 21 0 0 0 chr12 115394739 115394760 -28887729 + AT_rich Low_complexity Low_complexity 1 21 0 473 316 206 24 chr12 115394779 115395453 -28887036 - L2 LINE L2 -337 2977 2181 325 183 0 157 chr12 115395471 115395532 -28886957 - MER3 DNA MER1_type 0 209 173 1913 123 3 40 chr12 115395532 115395833 -28886656 + AluSx SINE Alu 1 290 -22 325 183 0 157 chr12 115395833 115395886 -28886603 - MER3 DNA MER1_type -36 173 113 227 291 9 64 chr12 115395925 115396035 -28886454 + MIR SINE MIR 156 259 -3 592 304 11 11 chr12 115396660 115396841 -28885648 - MIR SINE MIR -3 259 79 233 293 155 9 chr12 115397014 115397130 -28885359 - MIR3 SINE MIR -4 204 72 275 346 5 87 chr12 115397350 115397511 -28884978 + MER5A DNA MER1_type 18 164 -25 2713 30 0 0 chr12 115397511 115397809 -28884680 + AluY SINE Alu 1 298 -13 275 346 5 87 chr12 115397809 115397832 -28884657 + MER5A DNA MER1_type 164 187 -2 314 237 0 0 chr12 115397856 115397915 -28884574 - MIR SINE MIR -125 137 79 429 180 0 125 chr12 115398196 115398224 -28884265 + MER103 DNA DNA 15 45 -121 538 215 133 19 chr12 115398224 115398382 -28884107 + MER5B DNA MER1_type 2 177 -1 429 180 0 125 chr12 115398382 115398481 -28884008 + MER103 DNA DNA 45 126 -40 312 259 0 25 chr12 115398834 115398915 -28883574 + L2 LINE L2 2687 2765 -549 354 308 39 77 chr12 115399172 115399225 -28883264 + L2 LINE L2 2812 2865 -407 2202 133 13 3 chr12 115399225 115399533 -28882956 - AluSx SINE Alu -1 311 1 354 308 39 77 chr12 115399533 115399934 -28882555 + L2 LINE L2 2865 3267 -5 1569 94 5 9 chr12 115399945 115400157 -28882332 + AluY SINE Alu 1 211 -100 1003 81 0 27 chr12 115400294 115400443 -28882046 + Alu SINE Alu 167 311 0 321 312 16 32 chr12 115400455 115400580 -28881909 - MIR3 SINE MIR -83 125 3 189 0 0 0 chr12 115401358 115401379 -28881110 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1337 158 134 24 chr12 115401382 115401636 -28880853 - AluJo SINE Alu -30 282 1 191 266 188 0 chr12 115401889 115401953 -28880536 + MIR SINE MIR 15 90 -172 399 162 0 15 chr12 115401953 115402021 -28880468 - MLT1C LTR MaLR 0 467 401 257 223 117 76 chr12 115402028 115402225 -28880264 - MLT1C LTR MaLR -218 287 83 379 340 0 9 chr12 115402239 115402345 -28880144 + MIR SINE MIR 67 171 -91 193 233 0 23 chr12 115402410 115402453 -28880036 - L2 LINE L2 -18 3254 3213 3590 67 18 2 chr12 115402715 115403161 -28879328 + MLT2A2 LTR ERVL 1 453 0 197 325 34 43 chr12 115403386 115403503 -28878986 + MIR3 SINE MIR 44 159 -49 282 152 0 0 chr12 115403814 115403860 -28878629 - MLT2A2 LTR ERVL -56 397 352 186 297 81 0 chr12 115404031 115404105 -28878384 + L2 LINE L2 2761 2840 -474 459 321 10 25 chr12 115404135 115404331 -28878158 + L2 LINE L2 2921 3113 -200 * 636 200 124 7 chr12 115404314 115404459 -28878030 + MIR SINE MIR 98 259 -3 198 248 228 24 chr12 115404559 115404765 -28877724 - L2 LINE L2 -338 2976 2729 229 281 116 20 chr12 115404830 115404976 -28877513 + L2 LINE L2 1858 2017 -1297 2618 108 8 3 chr12 115404976 115405338 -28877151 - THE1B LTR MaLR 0 364 1 197 259 89 27 chr12 115405410 115405522 -28876967 + MIR SINE MIR 46 164 -98 300 287 20 50 chr12 115406450 115406551 -28875938 - MIR3 SINE MIR -23 185 88 1441 245 66 58 chr12 115406569 115407390 -28875099 - L2 LINE L2 0 3313 2487 393 296 128 23 chr12 115407432 115407815 -28874674 - MLT1K LTR MaLR 0 588 122 490 324 40 17 chr12 115409191 115409364 -28873125 + MIR SINE MIR 15 191 -71 200 305 85 43 chr12 115409381 115409522 -28872967 + L2 LINE L2 2245 2391 -923 245 170 57 0 chr12 115410003 115410056 -28872433 + L1MB5 LINE L1 5800 5855 -319 658 201 18 30 chr12 115410059 115410228 -28872261 + L1MB5 LINE L1 6008 6174 0 272 186 34 0 chr12 115410234 115410293 -28872196 + L1MB5 LINE L1 6114 6174 0 2317 153 97 36 chr12 115411691 115411987 -28870502 - MLT1D LTR MaLR 0 505 168 1368 168 137 11 chr12 115411987 115412249 -28870240 - AluJo SINE Alu -17 295 1 2317 153 97 36 chr12 115412249 115412428 -28870061 - MLT1D LTR MaLR -337 168 1 290 172 0 109 chr12 115412803 115412867 -28869622 + L2 LINE L2 3209 3265 -7 972 266 62 50 chr12 115413044 115413447 -28869042 + LTR16C LTR ERVL 82 489 -2 672 251 37 53 chr12 115413481 115413668 -28868821 - MIR SINE MIR 0 262 79 831 281 65 32 chr12 115414703 115415198 -28867291 - L1ME4a LINE L1 -109 6012 5502 206 222 0 0 chr12 115415271 115415307 -28867182 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 374 278 48 16 chr12 115415307 115415433 -28867056 - L1ME4a LINE L1 -1990 4156 4027 2193 93 4 4 chr12 115416032 115416310 -28866179 + AluSg SINE Alu 1 278 -32 1798 180 24 12 chr12 115416429 115416768 -28865721 + LTR32 LTR ERVL 10 352 -119 181 290 0 58 chr12 115417267 115417336 -28865153 + L2 LINE L2 3208 3272 0 190 318 135 40 chr12 115417404 115417530 -28864959 - MER5A DNA MER1_type -2 187 50 * 431 326 7 14 chr12 115417428 115417566 -28864923 + MER5A DNA MER1_type 50 186 -3 2930 6 0 16 chr12 115417706 115418027 -28864462 + AluYb8 SINE Alu 1 316 -2 478 204 120 7 chr12 115418326 115418467 -28864022 - LTR16C LTR ERVL 0 491 335 1497 215 29 6 chr12 115418467 115418811 -28863678 - MLT1A1 LTR MaLR 0 365 14 971 247 144 0 chr12 115418823 115419114 -28863375 - LTR16C LTR ERVL -158 333 1 1943 152 3 19 chr12 115419282 115419598 -28862891 + AluJo SINE Alu 1 311 -1 492 307 21 46 chr12 115420074 115420315 -28862174 + L2 LINE L2 3079 3313 0 295 238 129 34 chr12 115420370 115420517 -28861972 - L1ME LINE L1 -347 5774 5614 954 204 36 0 chr12 115420530 115420726 -28861763 + MER3 DNA MER1_type 7 209 0 208 308 141 13 chr12 115421428 115421506 -28860983 + L2 LINE L2 3216 3303 -10 276 157 0 0 chr12 115421506 115421557 -28860932 + L1MA4 LINE L1 6250 6300 0 1108 230 143 46 chr12 115421836 115422088 -28860401 - MLT1D LTR MaLR -8 497 271 2345 117 0 16 chr12 115422088 115422405 -28860084 - AluSx SINE Alu 0 312 1 1108 230 143 46 chr12 115422405 115422605 -28859884 - MLT1D LTR MaLR -234 271 1 581 275 0 7 chr12 115424392 115424541 -28857948 - L1MA10 LINE L1 -26 6308 6161 239 339 18 18 chr12 115424589 115424698 -28857791 + L2 LINE L2 2688 2796 -518 508 311 64 63 chr12 115424923 115425426 -28857063 + L2 LINE L2 2792 3312 -1 202 316 25 0 chr12 115425426 115425505 -28856984 + GA-rich Low_complexity Low_complexity 3 83 0 401 272 95 6 chr12 115425555 115425713 -28856776 - MIR SINE MIR -43 219 48 200 214 0 24 chr12 115425802 115425844 -28856645 - MER5A DNA MER1_type -2 187 147 3768 69 4 0 chr12 115425854 115426334 -28856155 + L1PA10 LINE L1 5683 6164 -4 1911 186 0 6 chr12 115426361 115426673 -28855816 + AluJb SINE Alu 3 312 0 231 349 37 28 chr12 115426687 115426796 -28855693 - MER5A DNA MER1_type -34 155 46 300 250 73 0 chr12 115426850 115426918 -28855571 + L2 LINE L2 3200 3272 0 2009 159 46 6 chr12 115427525 115427876 -28854613 - MLT1A1 LTR MaLR 0 365 1 253 155 6 23 chr12 115427989 115428062 -28854427 + Alu SINE Alu 1 43 -258 722 227 50 7 chr12 115428136 115428385 -28854104 - L2 LINE L2 -297 3016 2761 335 275 58 43 chr12 115429227 115429365 -28853124 - MIR SINE MIR -91 171 32 240 280 40 0 chr12 115429939 115430014 -28852475 - L2 LINE L2 -44 3269 3192 297 374 35 17 chr12 115430015 115430130 -28852359 - L2 LINE L2 0 3272 3156 862 194 204 28 chr12 115430335 115430551 -28851938 - MLT1D LTR MaLR -2 503 250 252 0 0 0 chr12 115430947 115430975 -28851514 + (A)n Simple_repeat Simple_repeat 1 28 0 537 285 55 25 chr12 115431656 115431856 -28850633 - MIR SINE MIR -48 214 9 2286 100 7 7 chr12 115432046 115432346 -28850143 + AluSq SINE Alu 11 310 -3 956 233 20 40 chr12 115432355 115432448 -28850041 + MIR SINE MIR 13 106 -156 3457 144 41 4 chr12 115432448 115432956 -28849533 - MER1A DNA MER1_type 0 527 1 956 233 20 40 chr12 115432956 115433115 -28849374 + MIR SINE MIR 106 260 -2 1216 217 46 94 chr12 115433186 115433642 -28848847 + MLT1H LTR MaLR 116 549 0 260 316 61 10 chr12 115433645 115433743 -28848746 - L2 LINE L2 -31 3241 3139 187 261 138 0 chr12 115433919 115433984 -28848505 - MIR SINE MIR -155 107 34 412 285 49 0 chr12 115433987 115434110 -28848379 + MIR SINE MIR 25 153 -109 510 232 22 81 chr12 115434167 115434352 -28848137 + MIR SINE MIR 89 262 0 601 203 81 0 chr12 115434791 115434949 -28847540 + MER45A DNA AcHobo 1 178 0 496 226 49 10 chr12 115435049 115435151 -28847338 - L2 LINE L2 0 3313 3208 1055 276 60 76 chr12 115435168 115435551 -28846938 + L2 LINE L2 2351 2739 -574 2272 152 3 16 chr12 115435551 115435919 -28846570 - MLT1A1 LTR MaLR -2 363 1 1055 276 60 76 chr12 115435919 115436324 -28846165 + L2 LINE L2 2739 3149 -164 2011 111 39 16 chr12 115436324 115436630 -28845859 - AluSq SINE Alu 0 313 1 1055 276 60 76 chr12 115436630 115436693 -28845796 + L2 LINE L2 3149 3212 -101 2614 40 7 0 chr12 115436693 115436996 -28845493 + AluY SINE Alu 1 305 -6 1055 276 60 76 chr12 115436996 115437118 -28845371 + L2 LINE L2 3212 3313 0 191 359 0 0 chr12 115437123 115437176 -28845313 - L2 LINE L2 -109 3163 3111 224 350 0 58 chr12 115437229 115437366 -28845123 + MIR SINE MIR 134 262 0 243 335 126 42 chr12 115437429 115437739 -28844750 - L2 LINE L2 -338 2976 2641 315 292 0 0 chr12 115438225 115438321 -28844168 + MER34 LTR ERV1 1 96 -446 237 167 15 76 chr12 115438324 115438390 -28844099 + LTR29 LTR ERV1 137 198 -424 * 1282 212 55 53 chr12 115438384 115438932 -28843557 + LTR29 LTR ERV1 79 595 0 395 268 78 73 chr12 115439161 115439257 -28843232 - MIR SINE MIR -7 255 156 1582 183 35 3 chr12 115439257 115439541 -28842948 + AluJo SINE Alu 1 293 -19 395 268 78 73 chr12 115439541 115439623 -28842866 - MIR SINE MIR -106 156 76 220 351 38 9 chr12 115440053 115440173 -28842316 - MIR SINE MIR -66 142 19 1181 117 12 7 chr12 115440329 115440569 -28841920 + AluSx SINE Alu 2 310 -2 297 276 43 17 chr12 115441083 115441199 -28841290 + MIR SINE MIR 112 230 -32 2237 111 3 3 chr12 115441757 115442055 -28840434 + AluSq SINE Alu 1 298 -15 539 287 20 4 chr12 115442280 115442469 -28840020 - MIR SINE MIR -62 146 1 198 273 91 55 chr12 115442980 115443090 -28839399 - L2 LINE L2 -14 3258 3145 710 269 42 19 chr12 115443172 115443384 -28839105 + MIR SINE MIR 8 224 -38 2293 129 6 23 chr12 115443394 115443736 -28838753 + MER1B DNA MER1_type 2 337 0 311 224 38 1 chr12 115443808 115443898 -28838591 - L1ME1 LINE L1 -51 6115 6035 2588 130 16 34 chr12 115443984 115444593 -28837896 - L1MB8 LINE L1 0 6178 5435 554 278 91 5 chr12 115444609 115444807 -28837682 - L1ME1 LINE L1 -177 5989 5775 184 329 41 14 chr12 115445469 115445542 -28836947 - MIR SINE MIR -121 141 67 296 242 99 0 chr12 115445645 115445736 -28836753 + MER113 DNA MER1_type? 1 100 -421 233 383 17 17 chr12 115445967 115446082 -28836407 + L2 LINE L2 3156 3270 -2 197 267 0 0 chr12 115446604 115446649 -28835840 - L2 LINE L2 -11 3261 3217 1644 195 0 10 chr12 115447120 115447412 -28835077 + AluJo SINE Alu 23 311 -1 255 111 32 32 chr12 115447725 115447788 -28834701 + CT-rich Low_complexity Low_complexity 2 64 0 1336 229 97 37 chr12 115447811 115448265 -28834224 - L2 LINE L2 -14 3299 2819 449 196 20 77 chr12 115448300 115448368 -28834121 + MER5A DNA MER1_type 52 123 -66 1859 160 17 0 chr12 115448368 115448662 -28833827 - AluSx SINE Alu -13 299 1 449 196 20 77 chr12 115448662 115448723 -28833766 + MER5A DNA MER1_type 123 186 -3 462 226 29 0 chr12 115449006 115449108 -28833381 - MIR3 SINE MIR -5 203 99 301 224 0 0 chr12 115449510 115449568 -28832921 - MIR SINE MIR -115 147 90 246 243 27 27 chr12 115449698 115449772 -28832717 + CT-rich Low_complexity Low_complexity 5 78 0 299 316 75 43 chr12 115449961 115450148 -28832341 - L2 LINE L2 -214 3058 2866 1693 151 3 108 chr12 115450528 115450860 -28831629 - AluJb SINE Alu -15 297 1 840 271 133 19 chr12 115450910 115451338 -28831151 - L1ME4a LINE L1 -24 6097 5621 2128 149 14 30 chr12 115451543 115451912 -28830577 + MLT1A1 LTR MaLR 1 363 -2 1931 160 3 0 chr12 115452280 115452573 -28829916 + AluJo SINE Alu 1 294 -18 714 318 51 0 chr12 115452577 115452794 -28829695 - MIR SINE MIR -24 238 11 719 257 34 11 chr12 115453612 115453791 -28828698 + MIR SINE MIR 3 185 -77 403 227 0 0 chr12 115453793 115453881 -28828608 - MLT1I LTR MaLR -7 402 315 2229 118 0 13 chr12 115454045 115454360 -28828129 - AluSx SINE Alu -1 311 1 26 0 0 0 chr12 115454611 115454637 -28827852 + AT_rich Low_complexity Low_complexity 1 26 0 237 222 99 62 chr12 115454661 115454742 -28827747 + L3 LINE CR1 1363 1446 -131 772 291 31 24 chr12 115454792 115455046 -28827443 + MIR SINE MIR 7 262 0 287 221 158 31 chr12 115455072 115455199 -28827290 + MIR SINE MIR 106 248 -14 188 323 129 11 chr12 115455299 115455392 -28827097 + MIR SINE MIR 158 261 -1 217 275 38 62 chr12 115455948 115456028 -28826461 + L2 LINE L2 3193 3270 -2 1939 138 10 10 chr12 115457096 115457408 -28825081 - AluSx SINE Alu 0 312 1 957 254 118 45 chr12 115457681 115458055 -28824434 - MLT1I LTR MaLR -8 401 1 867 331 41 24 chr12 115458067 115458983 -28823506 - L1M4 LINE L1 -392 5782 4852 2104 119 3 16 chr12 115458996 115459306 -28823183 - AluSq SINE Alu -7 306 1 603 280 76 36 chr12 115459992 115460217 -28822272 + MIR SINE MIR 19 252 -10 503 287 105 24 chr12 115460330 115460539 -28821950 - MIR SINE MIR -16 246 21 353 265 144 0 chr12 115460684 115460816 -28821673 - MIR3 SINE MIR -7 201 51 750 218 18 24 chr12 115461259 115461424 -28821065 - MIR SINE MIR -70 192 29 933 246 180 15 chr12 115461475 115461808 -28820681 - L2 LINE L2 0 3313 2926 444 239 45 45 chr12 115462306 115462440 -28820049 + MIR SINE MIR 18 151 -57 2035 126 10 16 chr12 115462513 115462823 -28819666 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr12 115462954 115462977 -28819512 + AT_rich Low_complexity Low_complexity 1 23 0 1388 201 78 31 chr12 115463008 115463079 -28819410 + MLT1C LTR MaLR 51 117 -350 2419 113 25 6 chr12 115463079 115463433 -28819056 - THE1B LTR MaLR 0 364 4 1388 201 78 31 chr12 115463433 115463720 -28818769 + MLT1C LTR MaLR 117 426 -41 643 239 6 12 chr12 115464605 115465107 -28817382 + (ATGGTG)n Simple_repeat Simple_repeat 1 499 0 679 221 0 11 chr12 115465107 115465288 -28817201 + (ATG)n Simple_repeat Simple_repeat 1 179 0 739 199 9 13 chr12 115465291 115465527 -28816962 + (ATGGTG)n Simple_repeat Simple_repeat 1 235 0 991 270 4 4 chr12 115465542 115465772 -28816717 - MIR SINE MIR -19 243 14 237 337 105 0 chr12 115465844 115465939 -28816550 - MIR SINE MIR -33 229 125 372 261 90 30 chr12 115466015 115466149 -28816340 + MIR3 SINE MIR 33 174 -34 468 0 0 0 chr12 115466346 115466398 -28816091 + (TG)n Simple_repeat Simple_repeat 2 53 0 705 240 78 75 chr12 115466407 115466444 -28816045 - L2 LINE L2 -255 3058 3023 1852 194 0 0 chr12 115466444 115466748 -28815741 - AluJo SINE Alu -8 304 1 705 240 78 75 chr12 115466748 115466903 -28815586 - L2 LINE L2 -290 3023 2863 946 208 0 91 chr12 115466903 115467087 -28815402 + MER20 DNA MER1_type 1 159 -60 252 0 0 0 chr12 115467087 115467115 -28815374 + (CA)n Simple_repeat Simple_repeat 2 29 0 946 208 0 91 chr12 115467115 115467171 -28815318 + MER20 DNA MER1_type 159 219 0 705 240 78 75 chr12 115467171 115467256 -28815233 - L2 LINE L2 -450 2863 2780 196 202 164 58 chr12 115467398 115467502 -28814987 - MIR SINE MIR -126 136 22 413 268 176 26 chr12 115467504 115467657 -28814832 + L2 LINE L2 3094 3269 -3 299 308 22 22 chr12 115468062 115468153 -28814336 - L2 LINE L2 0 3272 3182 207 321 24 24 chr12 115468958 115469042 -28813447 - L2 LINE L2 -212 3060 2977 412 259 37 0 chr12 115469043 115469151 -28813338 + MER46C DNA MER2_type 220 331 -7 228 304 0 39 chr12 115469157 115469259 -28813230 + MIR SINE MIR 153 250 -12 219 125 0 0 chr12 115469744 115469784 -28812705 + (CA)n Simple_repeat Simple_repeat 1 40 0 397 263 276 0 chr12 115470788 115470944 -28811545 - L2 LINE L2 -10 3303 3105 272 245 0 102 chr12 115471016 115471114 -28811375 + MIR SINE MIR 83 170 -92 671 323 1 32 chr12 115471456 115471686 -28810803 + MIR SINE MIR 10 232 -30 340 213 163 0 chr12 115471786 115471866 -28810623 + MIR SINE MIR 154 246 -16 277 211 0 28 chr12 115471874 115471945 -28810544 + MER116 DNA Mariner 2 70 -10 1342 40 11 6 chr12 115471989 115472166 -28810323 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1969 178 3 0 chr12 115472172 115472475 -28810014 - AluSx SINE Alu -8 304 1 216 196 36 18 chr12 115473062 115473118 -28809371 + L2 LINE L2 3168 3224 -48 656 246 77 11 chr12 115473264 115473447 -28809042 - MIR SINE MIR -3 259 65 202 188 0 0 chr12 115473581 115473613 -28808876 + polypurine Low_complexity Low_complexity 3 34 0 347 269 7 87 chr12 115473627 115473776 -28808713 - MIR SINE MIR 0 262 126 205 303 45 30 chr12 115474065 115474131 -28808358 - MIR SINE MIR -57 151 85 981 234 9 22 chr12 115474565 115474792 -28807697 + MIR SINE MIR 16 239 -23 1163 226 134 57 chr12 115475285 115475499 -28806990 - L1ME3A LINE L1 -3 6167 5971 1919 114 4 0 chr12 115475499 115475754 -28806735 - AluSx SINE Alu -19 293 38 1163 226 134 57 chr12 115475754 115475928 -28806561 - L1ME3A LINE L1 -199 5971 5812 2170 102 65 3 chr12 115475928 115476221 -28806268 - AluSx SINE Alu -1 311 1 1163 226 134 57 chr12 115476221 115476340 -28806149 - L1ME3A LINE L1 -358 5812 5620 182 284 126 47 chr12 115476929 115477056 -28805433 - MER5B DNA MER1_type -41 137 1 229 337 45 0 chr12 115477407 115477496 -28804993 + MIR SINE MIR 104 196 -66 268 233 67 58 chr12 115477609 115477729 -28804760 + L2 LINE L2 2622 2742 -572 386 209 15 97 chr12 115477786 115477920 -28804569 - MIR SINE MIR -51 211 89 224 342 11 0 chr12 115478540 115478656 -28803833 + MIR SINE MIR 36 152 -66 192 308 31 15 chr12 115478868 115478933 -28803556 + L2 LINE L2 3123 3188 -84 198 0 0 0 chr12 115478950 115478972 -28803517 + (TG)n Simple_repeat Simple_repeat 2 23 0 215 32 32 0 chr12 115479063 115479094 -28803395 + L2 LINE L2 3274 3305 -8 212 172 17 0 chr12 115479740 115479798 -28802691 + T-rich Low_complexity Low_complexity 5 63 0 285 313 0 24 chr12 115480524 115480607 -28801882 + L2 LINE L2 3187 3267 -5 845 221 78 20 chr12 115481497 115481701 -28800788 + MIR SINE MIR 47 262 0 389 231 96 147 chr12 115481853 115482104 -28800385 - MIR SINE MIR -13 249 12 287 324 132 18 chr12 115482205 115482517 -28799972 - L2 LINE L2 -233 3039 2685 352 328 114 8 chr12 115482587 115482718 -28799771 - MIR SINE MIR -80 128 4 529 199 0 16 chr12 115483150 115483308 -28799181 + MER20 DNA MER1_type 1 219 0 335 161 9 143 chr12 115483631 115483743 -28798746 - MIR3 SINE MIR -22 186 90 535 308 184 16 chr12 115483752 115484020 -28798469 - MLT1K LTR MaLR 0 588 366 477 50 0 0 chr12 115484020 115484080 -28798409 + (TC)n Simple_repeat Simple_repeat 1 60 0 535 308 184 16 chr12 115484080 115484305 -28798184 - MLT1K LTR MaLR -222 366 12 1628 174 3 85 chr12 115484897 115484993 -28797496 - AluJb SINE Alu 0 377 275 1150 89 6 11 chr12 115484993 115485172 -28797317 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 1628 174 3 85 chr12 115485172 115485480 -28797009 - AluJb SINE Alu -102 275 1 1791 183 3 16 chr12 115485822 115486128 -28796361 - AluJo SINE Alu -10 302 1 1679 264 113 56 chr12 115486204 115487132 -28795357 - L2 LINE L2 -20 3293 2295 346 358 16 11 chr12 115487171 115487358 -28795131 - MIR SINE MIR -55 207 20 828 172 121 0 chr12 115488180 115488354 -28794135 + MSTB2 LTR MaLR 1 195 -262 676 159 254 0 chr12 115488466 115488604 -28793885 + MER58A DNA MER1_type 45 217 -7 626 156 0 0 chr12 115488681 115488771 -28793718 - 5S rRNA rRNA -31 90 1 958 264 44 0 chr12 115488887 115489114 -28793375 - MIR SINE MIR 0 262 26 223 163 20 20 chr12 115489131 115489180 -28793309 - MIR SINE MIR -101 161 113 301 275 46 18 chr12 115489309 115489418 -28793071 + L2 LINE L2 3143 3254 -18 245 324 67 38 chr12 115490276 115490381 -28792108 + MIR SINE MIR 13 120 -142 480 230 43 29 chr12 115490384 115490524 -28791965 + L1ME1 LINE L1 6034 6334 0 382 300 42 0 chr12 115490532 115490652 -28791837 + MIR SINE MIR 114 238 -24 584 117 19 10 chr12 115490808 115490911 -28791578 - L1MB3 LINE L1 -15 6168 6065 328 275 94 84 chr12 115491257 115491374 -28791115 + L1ME LINE L1 5482 5596 -525 1930 123 7 0 chr12 115491374 115491689 -28790800 + AluSx SINE Alu 1 317 0 328 275 94 84 chr12 115491689 115491890 -28790599 + L1ME LINE L1 5596 5804 -317 869 159 45 6 chr12 115491899 115492056 -28790433 - FRAM SINE Alu -13 163 1 216 0 0 0 chr12 115492056 115492080 -28790409 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 470 275 79 32 chr12 115492970 115493159 -28789330 - MIR SINE MIR -36 226 29 324 333 76 7 chr12 115493521 115493665 -28788824 - L2 LINE L2 0 3272 3119 1921 147 0 0 chr12 115493686 115493978 -28788511 + AluSx SINE Alu 11 302 -10 1251 161 18 9 chr12 115494068 115494286 -28788203 - LTR26B LTR ERV1 -66 465 246 2166 194 33 13 chr12 115495701 115496159 -28786330 + MLT1C LTR MaLR 1 467 0 680 233 45 45 chr12 115497910 115498086 -28784403 + MIR SINE MIR 83 258 -4 975 261 40 0 chr12 115498787 115499013 -28783476 - MIR SINE MIR -15 247 13 240 235 0 0 chr12 115499191 115499242 -28783247 + MIR SINE MIR 189 239 -23 392 198 38 19 chr12 115499251 115499408 -28783081 + (CACCAT)n Simple_repeat Simple_repeat 2 161 0 645 235 0 0 chr12 115499437 115499616 -28782873 + (CAT)n Simple_repeat Simple_repeat 2 180 0 407 160 25 25 chr12 115499604 115499723 -28782766 + (CACCAT)n Simple_repeat Simple_repeat 1 119 0 * 197 282 39 26 chr12 115499723 115499801 -28782688 + L2 LINE L2 3194 3272 0 1331 192 32 52 chr12 115500543 115501011 -28781478 - MLT1D LTR MaLR -2 503 3 263 281 192 7 chr12 115501120 115501266 -28781223 + MIR SINE MIR 83 255 -7 254 73 24 0 chr12 115501498 115501539 -28780950 + (TG)n Simple_repeat Simple_repeat 1 42 0 1561 169 82 25 chr12 115501631 115501815 -28780674 - THE1C LTR MaLR 0 375 203 2089 137 0 0 chr12 115501815 115502121 -28780368 - AluSx SINE Alu -6 306 1 1561 169 82 25 chr12 115502121 115502291 -28780198 - THE1C LTR MaLR -172 203 1 215 243 50 29 chr12 115502626 115502711 -28779778 + MIR SINE MIR 32 120 -88 198 154 96 58 chr12 115502787 115502839 -28779650 + MER5B DNA MER1_type 1 54 -124 288 298 63 52 chr12 115502897 115503088 -28779401 + L2 LINE L2 2642 2834 -480 989 189 4 96 chr12 115503092 115503341 -28779148 + MIR SINE MIR 23 248 -14 1991 140 3 3 chr12 115503553 115503853 -28778636 + AluSx SINE Alu 1 300 -12 642 198 6 80 chr12 115504078 115504203 -28778286 - MER5B DNA MER1_type 0 178 66 2001 129 0 17 chr12 115504203 115504505 -28777984 - AluSx SINE Alu -15 297 1 642 198 6 80 chr12 115504505 115504541 -28777948 - MER5B DNA MER1_type -112 66 29 624 228 18 48 chr12 115504541 115504708 -28777781 + MER106A DNA MER1_type 1 162 -74 2160 146 0 26 chr12 115504721 115505064 -28777425 + MER1B DNA MER1_type 3 336 -1 2918 171 25 23 chr12 115505094 115505620 -28776869 - MER74A LTR ERVL -27 531 5 1918 133 33 0 chr12 115505620 115505922 -28776567 + AluJb SINE Alu 1 312 0 288 141 115 77 chr12 115505964 115506042 -28776447 + MER106B DNA MER1_type 979 1059 0 279 257 0 57 chr12 115506992 115507097 -28775392 - MER113 DNA MER1_type? -122 399 301 279 278 52 46 chr12 115507369 115507542 -28774947 + L1M4 LINE L1 4643 4816 -1330 4273 76 12 5 chr12 115507735 115508301 -28774188 - L1PA13 LINE L1 -72 6091 5522 345 322 72 11 chr12 115508325 115508685 -28773804 + L1M4 LINE L1 5010 5391 -755 380 241 99 7 chr12 115508828 115508969 -28773520 + L2 LINE L2 3160 3313 0 269 265 93 104 chr12 115509748 115510016 -28772473 + L2 LINE L2 2804 3068 -204 489 156 0 0 chr12 115510182 115510278 -28772211 + (TGGA)n Simple_repeat Simple_repeat 3 98 0 348 244 78 35 chr12 115510280 115510395 -28772094 + L2 LINE L2 3192 3311 -2 198 103 0 0 chr12 115510419 115510448 -28772041 + (TGGA)n Simple_repeat Simple_repeat 1 29 0 2147 97 19 10 chr12 115510575 115510883 -28771606 - AluY SINE Alu 0 311 1 209 283 21 110 chr12 115511623 115511814 -28770675 - L2 LINE L2 -93 3179 3006 417 320 102 0 chr12 115512064 115512261 -28770228 - MIR SINE MIR -2 260 44 860 265 46 71 chr12 115512603 115512768 -28769721 - L2 LINE L2 -110 3203 3048 1731 155 0 23 chr12 115512768 115513078 -28769411 + AluJb SINE Alu 1 303 -9 860 265 46 71 chr12 115513078 115513236 -28769253 - L2 LINE L2 -265 3048 2888 1765 218 100 30 chr12 115513424 115513933 -28768556 - MLT1H LTR MaLR -1 548 4 229 227 136 23 chr12 115514679 115514767 -28767722 + L2 LINE L2 3154 3251 -21 762 266 11 73 chr12 115514775 115514919 -28767570 + MIR SINE MIR 2 123 -139 933 265 15 8 chr12 115514919 115515179 -28767310 - MIR SINE MIR 0 262 1 762 266 11 73 chr12 115515179 115515309 -28767180 + MIR SINE MIR 123 259 -3 2154 117 32 35 chr12 115515418 115515794 -28766695 + THE1C LTR MaLR 1 375 0 426 265 146 27 chr12 115516145 115516330 -28766159 - MIR SINE MIR -13 249 43 580 250 16 109 chr12 115517083 115517331 -28765158 - MIR SINE MIR -10 252 28 599 294 12 32 chr12 115517976 115518158 -28764331 - MER112 DNA MER1_type -6 254 77 255 61 0 0 chr12 115518158 115518191 -28764298 + (TG)n Simple_repeat Simple_repeat 1 33 0 599 294 12 32 chr12 115518191 115518260 -28764229 - MER112 DNA MER1_type -183 77 8 2268 98 0 3 chr12 115518361 115518667 -28763822 - AluSx SINE Alu -7 305 1 5942 39 4 0 chr12 115519098 115519820 -28762669 - L1PA5 LINE L1 -1085 5061 4337 7425 39 15 0 chr12 115519829 115520900 -28761589 + L1PA5 LINE L1 5071 6154 0 253 260 21 73 chr12 115521077 115521173 -28761316 + L2 LINE L2 3139 3229 -43 1884 135 30 0 chr12 115521450 115521753 -28760736 - AluSx SINE Alu 0 312 1 552 290 6 40 chr12 115522993 115523108 -28759381 + MIR SINE MIR 93 201 -61 2275 144 24 65 chr12 115523108 115523399 -28759090 - MER65A LTR ERV1 0 445 179 369 0 0 0 chr12 115523399 115523440 -28759049 + (TG)n Simple_repeat Simple_repeat 2 42 0 2275 144 24 65 chr12 115523440 115523612 -28758877 - MER65A LTR ERV1 -266 179 1 552 290 6 40 chr12 115523612 115523672 -28758817 + MIR SINE MIR 201 262 0 683 237 137 51 chr12 115523686 115524054 -28758435 + L2 LINE L2 2693 3103 -210 1609 206 35 19 chr12 115524054 115524422 -28758067 - MLT1A2 LTR MaLR 0 374 1 683 237 137 51 chr12 115524422 115524494 -28757995 + L2 LINE L2 3103 3167 -146 866 201 75 9 chr12 115524494 115524712 -28757777 - L1MB7 LINE L1 0 6184 5952 349 224 0 0 chr12 115524755 115524822 -28757667 + L2 LINE L2 3230 3296 -17 560 142 21 28 chr12 115524863 115525004 -28757485 + GA-rich Low_complexity Low_complexity 3 142 0 950 214 37 53 chr12 115525516 115525839 -28756650 - Charlie4a DNA MER1_type -2 506 189 391 351 19 13 chr12 115526744 115526898 -28755591 - MIR SINE MIR -105 157 3 1723 161 8 105 chr12 115527105 115527179 -28755310 + MER7A DNA MER2_type 5 85 -2953 2000 132 10 6 chr12 115527179 115527490 -28754999 + AluJo SINE Alu 1 312 0 1723 161 8 105 chr12 115527490 115527788 -28754701 + MER7A DNA MER2_type 85 339 -7 521 182 0 0 chr12 115528009 115528097 -28754392 - MIR SINE MIR -108 154 67 1286 241 51 55 chr12 115529081 115529414 -28753075 + L2 LINE L2 2881 3213 -100 2085 113 0 3 chr12 115529414 115529707 -28752782 - AluSx SINE Alu -20 292 1 1286 241 51 55 chr12 115529707 115529808 -28752681 + L2 LINE L2 3213 3313 0 328 291 29 0 chr12 115530046 115530149 -28752340 + MIR SINE MIR 80 185 -77 679 240 60 5 chr12 115530428 115530628 -28751861 - MER113 DNA MER1_type? -307 214 4 195 129 0 0 chr12 115530879 115530910 -28751579 + (CTG)n Simple_repeat Simple_repeat 1 31 0 937 124 0 32 chr12 115530916 115531102 -28751387 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 1002 144 0 0 chr12 115531115 115531317 -28751172 + (ATG)n Simple_repeat Simple_repeat 1 382 0 1002 144 0 0 chr12 115531317 115531497 -28750992 + (ATG)n Simple_repeat Simple_repeat 1 180 0 291 146 0 0 chr12 115531572 115531627 -28750862 + (ATGGTG)n Simple_repeat Simple_repeat 2 56 0 524 220 113 7 chr12 115531642 115531792 -28750697 - MIR SINE MIR 0 262 97 369 256 238 6 chr12 115531792 115531956 -28750533 - MIR SINE MIR -59 203 2 852 273 95 36 chr12 115532543 115533070 -28749419 - L1ME4a LINE L1 0 6121 5564 552 273 103 16 chr12 115533137 115533237 -28749252 + MIR SINE MIR 20 110 -152 936 193 91 0 chr12 115533237 115533434 -28749055 - MER20 DNA MER1_type -4 215 1 552 273 103 16 chr12 115533434 115533527 -28748962 + MIR SINE MIR 110 230 -32 11473 181 38 12 chr12 115533738 115536188 -28746301 + L1MA5 LINE L1 252 2637 -4725 1001 211 0 0 chr12 115536188 115536363 -28746126 + FAM SINE Alu 1 175 0 11473 181 38 12 chr12 115536363 115539667 -28742822 + L1MA5 LINE L1 2637 7362 0 500 280 120 3 chr12 115540347 115540576 -28741913 + MIR SINE MIR 3 256 -6 431 273 153 34 chr12 115541104 115541313 -28741176 + MIR SINE MIR 10 243 -19 277 279 275 0 chr12 115541844 115542005 -28740484 - MIR SINE MIR -24 238 25 791 251 15 20 chr12 115542214 115542413 -28740076 - MLT1A1 LTR MaLR -4 361 164 * 1810 126 4 26 chr12 115542408 115542678 -28739811 - MLT2B3 LTR ERVL -290 264 1 1462 143 50 57 chr12 115542837 115543137 -28739352 + AluJo SINE Alu 1 298 -14 276 204 0 0 chr12 115543137 115543186 -28739303 + MER117 DNA MER1_type 50 98 -99 2207 116 50 112 chr12 115543523 115543867 -28738622 - MLT2D LTR ERVL -1 413 100 1205 174 10 0 chr12 115543867 115544068 -28738421 + L1PA15 LINE L1 5963 6165 0 2207 116 50 112 chr12 115544068 115544162 -28738327 - MLT2D LTR ERVL -314 100 2 2273 81 0 7 chr12 115544163 115544461 -28738028 + AluSx SINE Alu 1 296 -16 467 239 224 15 chr12 115544488 115544714 -28737775 - MER113 DNA MER1_type? -3 518 228 2549 150 11 23 chr12 115544714 115545153 -28737336 - Tigger2a DNA MER2_type 0 434 1 467 239 224 15 chr12 115545153 115545189 -28737300 - MER113 DNA MER1_type? -293 228 201 2083 124 0 9 chr12 115545189 115545504 -28736985 + AluSx SINE Alu 1 312 0 507 301 7 7 chr12 115545550 115545693 -28736796 - L2 LINE L2 -221 3051 2909 630 228 243 5 chr12 115546935 115547137 -28735352 + MIR SINE MIR 13 262 0 1754 130 13 25 chr12 115547363 115547678 -28734811 - AluJb SINE Alu -1 311 1 493 285 89 42 chr12 115548170 115548384 -28734105 + L2 LINE L2 3090 3313 0 295 341 123 30 chr12 115548387 115548689 -28733800 + L2 LINE L2 2274 2603 -711 1823 113 0 4 chr12 115548752 115549008 -28733481 + AluSx SINE Alu 36 290 -22 28 0 0 0 chr12 115549008 115549036 -28733453 + AT_rich Low_complexity Low_complexity 1 28 0 1918 157 0 0 chr12 115549047 115549347 -28733142 + AluJb SINE Alu 1 300 -12 210 191 0 0 chr12 115549347 115549389 -28733100 + G-rich Low_complexity Low_complexity 2 43 0 306 326 140 26 chr12 115549817 115550010 -28732479 + MIR SINE MIR 22 230 -32 198 337 128 0 chr12 115550418 115550504 -28731985 + L2 LINE L2 3140 3236 -36 317 333 29 0 chr12 115551269 115551374 -28731115 + HAL1 LINE L1 825 932 -1575 307 382 16 27 chr12 115552280 115552466 -28730023 - LTR67 LTR ERVL -110 447 264 299 272 103 44 chr12 115552511 115552647 -28729842 - LTR67 LTR ERVL -407 150 7 2206 121 0 6 chr12 115552704 115553018 -28729471 - AluSx SINE Alu 0 312 1 265 231 0 0 chr12 115553601 115553653 -28728836 - MER112 DNA MER1_type -6 254 203 1031 228 38 0 chr12 115553661 115553872 -28728617 + MER58A DNA MER1_type 5 223 -1 2269 87 3 0 chr12 115553888 115554187 -28728302 - AluSq SINE Alu -13 300 1 208 268 98 24 chr12 115554281 115554363 -28728126 - MIR SINE MIR -163 99 12 334 295 47 7 chr12 115554467 115554616 -28727873 - L1ME4a LINE L1 -13 6108 5954 230 374 43 0 chr12 115554718 115554833 -28727656 - MIR3 SINE MIR -3 205 86 259 294 44 59 chr12 115554864 115555000 -28727489 + L2 LINE L2 2924 3057 -215 259 167 0 21 chr12 115555017 115555065 -28727424 + L2 LINE L2 3262 3308 -5 192 171 24 24 chr12 115555065 115555106 -28727383 - MIR SINE MIR -138 70 30 345 271 175 34 chr12 115555152 115555329 -28727160 + MIR SINE MIR 61 262 0 747 218 6 46 chr12 115555378 115555552 -28726937 - MIR SINE MIR -14 248 82 1808 141 0 4 chr12 115555792 115556068 -28726421 + AluSx SINE Alu 1 275 -37 455 270 71 8 chr12 115556196 115556322 -28726167 - MIR SINE MIR -10 252 119 362 129 57 0 chr12 115556390 115556460 -28726029 - L1MA5 LINE L1 0 6300 6227 881 245 30 30 chr12 115556495 115556728 -28725761 + MIR SINE MIR 30 262 0 631 197 184 0 chr12 115556768 115556920 -28725569 - MER5A DNA MER1_type 0 189 10 824 209 99 5 chr12 115557753 115557944 -28724545 - MER3 DNA MER1_type 0 209 1 717 296 45 29 chr12 115558140 115558231 -28724258 - MIR SINE MIR -14 248 160 2250 85 3 3 chr12 115558231 115558525 -28723964 - AluSp SINE Alu -13 300 7 717 296 45 29 chr12 115558525 115558676 -28723813 - MIR SINE MIR -102 160 2 2096 113 0 3 chr12 115558864 115559157 -28723332 + AluSx SINE Alu 1 292 -20 1996 170 17 14 chr12 115559241 115559588 -28722901 - MER7A DNA MER2_type 0 346 1 1025 236 37 21 chr12 115559782 115560023 -28722466 - MIR SINE MIR -10 252 8 612 283 49 41 chr12 115560832 115561076 -28721413 - MIR SINE MIR -3 259 14 313 303 62 37 chr12 115561063 115561225 -28721264 + L2 LINE L2 3078 3243 -29 * 761 279 93 19 chr12 115561989 115562355 -28720134 - L1ME4a LINE L1 0 6121 5729 205 354 61 0 chr12 115562730 115562812 -28719677 - MIR SINE MIR -67 141 55 1525 265 63 20 chr12 115564290 115564773 -28717716 - L2 LINE L2 -67 3246 2750 580 296 45 0 chr12 115565451 115565630 -28716859 - L2 LINE L2 0 3313 3127 423 0 0 0 chr12 115566226 115566273 -28716216 + (TG)n Simple_repeat Simple_repeat 2 48 0 431 321 183 4 chr12 115566301 115566575 -28715914 - L3 LINE CR1 -11 1566 1244 276 248 55 83 chr12 115566622 115566767 -28715722 - MIR SINE MIR -111 151 11 180 363 8 57 chr12 115566771 115566895 -28715594 - L2 LINE L2 -5 3308 3191 239 245 0 71 chr12 115568286 115568384 -28714105 + T-rich Low_complexity Low_complexity 2 92 0 336 24 0 0 chr12 115568784 115568825 -28713664 + (CA)n Simple_repeat Simple_repeat 2 42 0 192 262 49 16 chr12 115568892 115568953 -28713536 + MER5B DNA MER1_type 8 70 -108 1566 161 0 22 chr12 115568983 115569256 -28713233 + AluJo SINE Alu 18 284 -28 281 222 16 16 chr12 115569414 115569477 -28713012 - MIR3 SINE MIR -27 181 119 1571 167 0 0 chr12 115569479 115569722 -28712767 + MER7A DNA MER2_type 1 241 -105 2310 122 33 3 chr12 115569722 115570051 -28712438 + MER1B DNA MER1_type 1 339 0 446 176 0 197 chr12 115570051 115570191 -28712298 + MER7A DNA MER2_type 234 345 -1 356 294 24 59 chr12 115570240 115570451 -28712038 + MIR SINE MIR 6 254 -8 883 198 96 5 chr12 115570621 115570808 -28711681 - MER3 DNA MER1_type 0 209 6 266 228 87 43 chr12 115570949 115571041 -28711448 - MIR SINE MIR -76 132 37 1822 234 63 15 chr12 115571850 115572324 -28710165 - MLT1J LTR MaLR -14 497 1 2025 125 3 3 chr12 115572347 115572650 -28709839 - AluSx SINE Alu -9 303 1 212 202 58 98 chr12 115572882 115573055 -28709434 + L2 LINE L2 2800 2965 -349 719 270 95 5 chr12 115573059 115573281 -28709208 + MIR SINE MIR 5 246 -16 * 804 249 120 13 chr12 115573277 115573502 -28708987 - MIR SINE MIR 0 262 14 1224 204 142 70 chr12 115574115 115574586 -28707903 + MLT1D LTR MaLR 1 505 0 194 358 0 0 chr12 115574603 115574670 -28707819 + MER5A DNA MER1_type 120 186 -3 376 82 0 0 chr12 115575460 115575509 -28706980 - MLT2C1 LTR ERVL 0 397 349 792 100 0 0 chr12 115575534 115575654 -28706835 + (TGGA)n Simple_repeat Simple_repeat 1 120 0 321 130 0 0 chr12 115575701 115575747 -28706742 + MLT2C2 LTR ERVL 417 462 -2 * 2111 177 32 5 chr12 115575747 115576113 -28706376 - MLT2D LTR ERVL -38 482 1 189 186 70 0 chr12 115576225 115576268 -28706221 + MIR SINE MIR 162 207 -55 315 238 12 12 chr12 115576302 115576386 -28706103 + LTR67 LTR ERVL 102 185 -372 423 208 131 115 chr12 115576502 115576576 -28705913 + MER5A DNA MER1_type 4 75 -114 1855 122 61 3 chr12 115576576 115576871 -28705618 + AluSx SINE Alu 1 312 0 423 208 131 115 chr12 115576871 115576979 -28705510 + MER5A DNA MER1_type 75 189 0 905 248 51 31 chr12 115577484 115577573 -28704916 - MIR SINE MIR 0 262 176 1969 181 122 26 chr12 115577573 115578032 -28704457 - MLT1D LTR MaLR -2 503 1 905 248 51 31 chr12 115578032 115578196 -28704293 - MIR SINE MIR -86 176 4 2130 154 31 11 chr12 115578416 115578798 -28703691 - MLT1B LTR MaLR 0 390 1 1048 201 10 20 chr12 115579184 115579383 -28703106 + MER58A DNA MER1_type 28 224 0 363 294 34 34 chr12 115579387 115579533 -28702956 - MIR3 SINE MIR -43 165 20 513 308 8 15 chr12 115579880 115580048 -28702441 + MER5A DNA MER1_type 11 188 -1 339 85 0 0 chr12 115580503 115580550 -28701939 + (T)n Simple_repeat Simple_repeat 1 47 0 460 241 9 9 chr12 115581045 115581161 -28701328 - L2 LINE L2 -12 3301 3186 379 345 43 24 chr12 115581468 115581677 -28700812 + MIR SINE MIR 2 214 -48 234 217 159 0 chr12 115581899 115581968 -28700521 + MER96 DNA MER1_type? 94 173 -2 216 311 123 19 chr12 115582009 115582115 -28700374 + MER5A DNA MER1_type 7 123 -66 899 205 29 12 chr12 115582151 115582322 -28700167 + MER5A DNA MER1_type 1 174 -15 648 250 12 25 chr12 115582311 115582471 -28700018 + MER5B DNA MER1_type 21 178 0 * 255 227 13 40 chr12 115583016 115583091 -28699398 - MIR SINE MIR -50 158 85 25 0 0 0 chr12 115583443 115583468 -28699021 + GC_rich Low_complexity Low_complexity 1 25 0 944 279 46 8 chr12 115584349 115584589 -28697900 - MIR SINE MIR -1 261 13 268 299 86 8 chr12 115584702 115584819 -28697670 - MIR SINE MIR -12 250 125 689 318 27 27 chr12 115585123 115585381 -28697108 + MIR SINE MIR 5 262 0 424 257 3 31 chr12 115585523 115585674 -28696815 - MIR SINE MIR -62 146 6 479 239 32 0 chr12 115586437 115586566 -28695923 - MIR SINE MIR -63 145 45 188 286 117 13 chr12 115586844 115586921 -28695568 + MIR3 SINE MIR 15 99 -109 257 213 93 46 chr12 115587590 115587698 -28694791 + MIR SINE MIR 58 170 -92 224 200 0 55 chr12 115588875 115588930 -28693559 - L2 LINE L2 -7 3265 3214 362 287 90 93 chr12 115589009 115589600 -28692889 - L2 LINE L2 -205 3067 2498 757 136 185 0 chr12 115589644 115589806 -28692683 + L1MB3 LINE L1 5989 6180 -3 1869 181 67 25 chr12 115589992 115590439 -28692050 - MLT1C LTR MaLR -1 466 1 2115 114 0 0 chr12 115590656 115590954 -28691535 - AluSx SINE Alu -12 300 3 1148 223 12 8 chr12 115591075 115591331 -28691158 + MIR SINE MIR 3 259 -3 314 106 0 0 chr12 115591930 115591977 -28690512 + L2 LINE L2 3266 3312 -1 2213 97 0 13 chr12 115592049 115592349 -28690140 - AluSx SINE Alu -16 296 1 222 332 98 13 chr12 115592394 115592754 -28689735 - L2 LINE L2 -1015 2299 1842 226 200 0 0 chr12 115593306 115593341 -28689148 + MIR3 SINE MIR 153 187 -21 2162 123 136 21 chr12 115593388 115593771 -28688718 - MSTA LTR MaLR -1 427 1 413 338 66 9 chr12 115593881 115594094 -28688395 - MIR SINE MIR -17 245 21 586 296 142 19 chr12 115594297 115594817 -28687672 + L1ME3A LINE L1 5365 5948 -222 889 191 121 10 chr12 115595280 115595479 -28687010 + MER58A DNA MER1_type 1 221 -3 186 323 42 31 chr12 115595626 115595722 -28686767 + L2 LINE L2 3168 3264 -8 1234 246 143 24 chr12 115595751 115596206 -28686283 - MLT1J LTR MaLR 0 511 3 977 142 99 62 chr12 115597006 115597217 -28685272 - MER20 DNA MER1_type 0 219 1 255 291 94 34 chr12 115597299 115597416 -28685073 + MIR3 SINE MIR 85 208 0 698 259 39 17 chr12 115597773 115597966 -28684523 + MIR SINE MIR 3 206 -56 195 162 0 0 chr12 115597970 115598007 -28684482 + (TA)n Simple_repeat Simple_repeat 2 38 0 319 217 43 61 chr12 115598016 115598131 -28684358 - L1MCa LINE L1 -4335 2091 1979 2001 134 3 6 chr12 115598467 115598780 -28683709 + AluSx SINE Alu 1 312 0 245 246 0 18 chr12 115598875 115598932 -28683557 + CT-rich Low_complexity Low_complexity 4 59 0 1492 201 130 11 chr12 115599419 115599773 -28682716 - MSTD LTR MaLR 0 396 1 419 237 85 40 chr12 115599794 115599971 -28682518 - MLT1J LTR MaLR 0 511 327 908 178 168 0 chr12 115599979 115600164 -28682325 + MER58A DNA MER1_type 1 216 -8 947 256 10 5 chr12 115600284 115600491 -28681998 + MER63A DNA MER1_type 3 210 0 629 220 28 73 chr12 115600500 115600677 -28681812 - MLT1J LTR MaLR -319 192 24 613 304 33 5 chr12 115600849 115601033 -28681456 - MIR3 SINE MIR -5 203 15 370 302 9 9 chr12 115601081 115601197 -28681292 - MER117 DNA MER1_type -81 116 1 432 298 18 42 chr12 115601402 115601570 -28680919 - MIR SINE MIR -56 206 43 193 352 14 0 chr12 115601810 115601881 -28680608 + L2 LINE L2 3201 3272 -41 231 107 0 107 chr12 115601883 115601939 -28680550 + L1MA5 LINE L1 6249 6298 -2 215 308 211 0 chr12 115601985 115602089 -28680400 + L2 LINE L2 3139 3264 -8 454 250 87 41 chr12 115602147 115602343 -28680146 + MIR SINE MIR 22 226 -36 * 665 278 90 14 chr12 115602326 115602538 -28679951 + MIR SINE MIR 35 262 0 552 312 48 22 chr12 115603188 115603416 -28679073 - MIR SINE MIR -12 250 18 243 364 70 8 chr12 115603454 115603583 -28678906 + MIR SINE MIR 117 253 -9 1098 219 32 8 chr12 115603741 115603987 -28678502 + MIR SINE MIR 9 260 -2 369 242 105 24 chr12 115603995 115604119 -28678370 - MIR SINE MIR -101 161 28 744 272 72 17 chr12 115604590 115604825 -28677664 - MIR SINE MIR -8 254 7 3850 124 31 45 chr12 115605590 115606023 -28676466 + L1MA8 LINE L1 4873 5310 -981 2417 59 0 0 chr12 115606023 115606313 -28676176 + AluY SINE Alu 1 290 -21 3850 124 31 45 chr12 115606313 115606335 -28676154 + L1MA8 LINE L1 5310 5331 -960 1540 143 8 0 chr12 115606335 115606573 -28675916 + AluSx SINE Alu 34 273 -39 3850 124 31 45 chr12 115606573 115607177 -28675312 + L1MA8 LINE L1 5331 5920 -371 574 135 143 32 chr12 115607171 115607297 -28675192 + L1MA8 LINE L1 6146 6285 -6 * 1264 277 136 41 chr12 115607363 115608257 -28674232 - L2 LINE L2 -36 3236 2245 550 227 171 15 chr12 115608254 115608455 -28674034 + MIR SINE MIR 21 256 -6 * 279 301 129 0 chr12 115608588 115608681 -28673808 + L2 LINE L2 3155 3259 -13 278 235 43 70 chr12 115608842 115608957 -28673532 - L3 LINE CR1 -136 1441 1330 534 101 0 14 chr12 115609269 115609393 -28673096 - MER53 DNA DNA -6 183 1 1690 149 24 28 chr12 115610723 115611149 -28671340 + AluJo SINE Alu 1 425 0 420 348 66 17 chr12 115611254 115611435 -28671054 + L2 LINE L2 3072 3261 -11 213 279 59 66 chr12 115611688 115611824 -28670665 - L2 LINE L2 -18 3295 3161 851 256 57 5 chr12 115611882 115612093 -28670396 + MIR SINE MIR 40 261 -1 264 200 0 0 chr12 115613351 115613396 -28669093 - FAM SINE Alu -4 171 127 1401 156 0 0 chr12 115613396 115613614 -28668875 - AluJo SINE Alu -92 220 3 443 258 120 25 chr12 115613618 115613901 -28668588 - L1ME4a LINE L1 -286 5835 5526 343 311 194 26 chr12 115613927 115614309 -28668180 - L1ME4a LINE L1 -813 5333 4888 391 275 62 62 chr12 115615594 115615754 -28666735 + MIR SINE MIR 23 182 -80 271 280 30 45 chr12 115617717 115617835 -28664654 - MER5B DNA MER1_type -23 166 41 201 209 0 23 chr12 115618748 115618791 -28663698 + L3 LINE CR1 1534 1575 -2 518 242 172 19 chr12 115618878 115619035 -28663454 - MER5A DNA MER1_type 0 189 9 336 156 109 0 chr12 115619613 115619677 -28662812 + MER5A DNA MER1_type 56 126 -63 287 222 12 0 chr12 115620567 115620648 -28661841 + (CA)n Simple_repeat Simple_repeat 1 82 0 425 283 58 42 chr12 115620783 115620963 -28661526 - MER5A DNA MER1_type -8 170 1 196 284 80 34 chr12 115621662 115621750 -28660739 + MIR SINE MIR 59 150 -58 233 255 0 0 chr12 115622062 115622113 -28660376 + C-rich Low_complexity Low_complexity 2 52 0 639 286 36 5 chr12 115623709 115623929 -28658560 - L1ME3A LINE L1 -5 6165 5939 1037 121 0 7 chr12 115624094 115624243 -28658246 + AluJb SINE Alu 1 148 -164 1849 148 28 0 chr12 115624618 115624909 -28657580 - AluSx SINE Alu -13 299 1 2225 102 0 3 chr12 115625191 115625494 -28656995 - AluSc SINE Alu -7 302 1 2194 123 0 0 chr12 115625494 115625802 -28656687 - AluSx SINE Alu -4 308 1 698 336 109 12 chr12 115625842 115626253 -28656236 - L2 LINE L2 -10 3303 2853 5719 141 28 17 chr12 115626401 115627447 -28655042 - L1MD1 LINE L1 -8 6234 5181 4347 197 143 10 chr12 115627426 115628445 -28654044 - L1MDa LINE L1 -5385 1155 1 * 2035 97 0 11 chr12 115628479 115628757 -28653732 - AluY SINE Alu -10 301 27 628 132 0 0 chr12 115629038 115629129 -28653360 + FLAM SINE Alu 38 128 -15 23 0 0 0 chr12 115629129 115629152 -28653337 + AT_rich Low_complexity Low_complexity 1 23 0 299 267 317 17 chr12 115629500 115629680 -28652809 - MIR SINE MIR -28 234 1 212 333 33 0 chr12 115629832 115629892 -28652597 - L3b LINE CR1 -7 1576 1515 266 241 108 0 chr12 115630012 115630095 -28652394 + MER113 DNA MER1_type? 123 214 -307 1980 119 0 7 chr12 115630293 115630578 -28651911 - AluSq SINE Alu -30 283 1 301 197 99 0 chr12 115630806 115630877 -28651612 - MER116 DNA Mariner -2 78 1 593 300 56 0 chr12 115630889 115631069 -28651420 - MIR SINE MIR -61 201 12 1727 160 0 20 chr12 115631270 115631570 -28650919 + AluJo SINE Alu 1 294 -18 279 105 0 0 chr12 115632381 115632419 -28650070 + L2 LINE L2 3262 3299 -14 231 36 0 0 chr12 115632421 115632449 -28650040 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 227 171 0 0 chr12 115632618 115632659 -28649830 - Alu SINE Alu -8 125 85 822 187 96 53 chr12 115632659 115632868 -28649621 - AluJo SINE Alu -92 220 3 3460 168 30 31 chr12 115632868 115633077 -28649412 - L1MC3 LINE L1 -1 7784 7576 3532 131 9 14 chr12 115633077 115633659 -28648830 - L1PA16 LINE L1 -2 6164 5586 3460 168 30 31 chr12 115633659 115634122 -28648367 - L1MC3 LINE L1 -209 7576 7113 2515 183 32 78 chr12 115634699 115635234 -28647255 - MLT1E2 LTR MaLR 0 626 125 1574 170 139 9 chr12 115635234 115635557 -28646932 + MLT1A1 LTR MaLR 1 365 0 2515 183 32 78 chr12 115635557 115635677 -28646812 - MLT1E2 LTR MaLR -501 125 1 487 245 199 0 chr12 115635677 115635828 -28646661 - MER5A DNA MER1_type 0 189 9 950 192 57 0 chr12 115635912 115636089 -28646400 - MER5A DNA MER1_type -2 187 1 267 54 0 0 chr12 115637998 115638035 -28644454 + (CA)n Simple_repeat Simple_repeat 1 37 0 486 113 0 0 chr12 115639127 115639189 -28643300 + AluS SINE Alu 2 63 -248 251 276 23 11 chr12 115639219 115639306 -28643183 - MIR SINE MIR -1 261 174 1696 118 0 17 chr12 115639309 115639546 -28642943 + AluSg/x SINE Alu 66 298 -14 278 186 9 177 chr12 115639803 115639916 -28642573 - MER102b DNA MER1_type 0 341 248 432 0 0 0 chr12 115639922 115639970 -28642519 + (TG)n Simple_repeat Simple_repeat 1 48 0 613 234 161 46 chr12 115640801 115641019 -28641470 - MIR SINE MIR -1 261 19 614 319 70 31 chr12 115641163 115641701 -28640788 - L2 LINE L2 -213 3059 2498 375 306 67 30 chr12 115641798 115641932 -28640557 + MIR SINE MIR 12 150 -112 453 262 97 14 chr12 115642709 115642854 -28639635 - MER91A DNA MER1_type -39 157 1 975 94 44 0 chr12 115643426 115643586 -28638903 + L1MD3 LINE L1 7829 7995 0 394 274 0 38 chr12 115643737 115643843 -28638646 - L2 LINE L2 -10 3303 3202 615 264 72 78 chr12 115644468 115644816 -28637673 - L2 LINE L2 0 3272 2927 2005 112 10 34 chr12 115645267 115645562 -28636927 + AluJb SINE Alu 19 306 -6 1752 178 0 38 chr12 115645881 115646196 -28636293 - AluJb SINE Alu -2 310 8 531 264 16 8 chr12 115646202 115646327 -28636162 - MIR SINE MIR -112 150 25 851 168 22 50 chr12 115646420 115646599 -28635890 + MER5B DNA MER1_type 1 174 -4 334 191 22 70 chr12 115646619 115646742 -28635747 - MER5A DNA MER1_type -6 183 88 1635 134 128 26 chr12 115646752 115647095 -28635394 - L1PA15 LINE L1 -9 6156 5779 2321 68 34 10 chr12 115647108 115647402 -28635087 - AluSq SINE Alu -12 301 1 341 183 56 0 chr12 115647403 115647474 -28635015 - MER5A DNA MER1_type -114 75 1 465 293 66 18 chr12 115647485 115647652 -28634837 - MIR SINE MIR -70 192 18 230 162 0 0 chr12 115647833 115647870 -28634619 + L2 LINE L2 3263 3299 -14 2101 156 0 3 chr12 115649182 115649489 -28633000 + AluJb SINE Alu 1 306 -6 1028 198 0 0 chr12 115649490 115649662 -28632827 + AluJo/FRAM SINE Alu 133 304 -8 816 278 57 4 chr12 115649820 115650065 -28632424 - MIR SINE MIR -3 259 2 2052 117 3 3 chr12 115650234 115650516 -28631973 + AluSx SINE Alu 1 282 -30 306 0 0 0 chr12 115650516 115650550 -28631939 + (CA)n Simple_repeat Simple_repeat 1 34 0 421 310 129 54 chr12 115650861 115651248 -28631241 + L3 LINE CR1 1084 1499 -78 943 199 102 5 chr12 115652258 115652474 -28630015 + MIR SINE MIR 10 246 -16 1864 116 72 0 chr12 115652671 115652947 -28629542 - AluY SINE Alu -15 296 1 549 89 0 0 chr12 115652947 115653026 -28629463 + HY3 scRNA scRNA 22 100 -1 186 43 0 0 chr12 115653026 115653049 -28629440 + (TAAAAA)n Simple_repeat Simple_repeat 5 27 0 515 292 109 35 chr12 115653214 115653471 -28629018 - L2 LINE L2 -2 3270 2995 351 242 74 11 chr12 115654193 115654288 -28628201 - MER5A DNA MER1_type -77 112 12 742 220 64 6 chr12 115654292 115654465 -28628024 + MER5A DNA MER1_type 5 187 -2 703 259 24 12 chr12 115654473 115654643 -28627846 + MER5B DNA MER1_type 2 173 -5 260 265 59 44 chr12 115654691 115654827 -28627662 + MER5B DNA MER1_type 9 146 -32 210 386 11 0 chr12 115654860 115654948 -28627541 - MIR3 SINE MIR -39 169 81 1071 134 20 0 chr12 115655033 115655211 -28627278 - AluSp SINE Alu 0 314 134 2437 90 0 3 chr12 115655370 115655682 -28626807 + AluY SINE Alu 1 311 0 721 236 40 6 chr12 115655722 115655896 -28626593 - MIR SINE MIR -9 253 74 3235 131 14 10 chr12 115655908 115656420 -28626069 - L1MB3 LINE L1 -8 6175 5662 2166 132 23 0 chr12 115656431 115656734 -28625755 - AluSx SINE Alu -2 310 1 240 156 0 22 chr12 115656734 115656779 -28625710 - L1MB3 LINE L1 -507 5676 5633 199 275 29 43 chr12 115656780 115656849 -28625640 - MIR SINE MIR -194 68 1 405 0 0 0 chr12 115656951 115656996 -28625493 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr12 115657390 115657411 -28625078 + AT_rich Low_complexity Low_complexity 1 21 0 1939 134 7 42 chr12 115658141 115658448 -28624041 + AluJb SINE Alu 1 296 -16 916 188 97 19 chr12 115658489 115658696 -28623793 - MER58A DNA MER1_type 0 224 2 202 288 0 51 chr12 115658696 115658748 -28623741 + MIR SINE MIR 38 88 -120 189 246 35 0 chr12 115658925 115658982 -28623507 + MIR3 SINE MIR 112 170 -38 1059 147 0 83 chr12 115658999 115659203 -28623286 + AluSg/x SINE Alu 119 305 -5 321 250 0 0 chr12 115659374 115659442 -28623047 - MIR3 SINE MIR -51 157 90 259 218 0 18 chr12 115659443 115659498 -28622991 - MLT1H LTR MaLR -429 120 67 227 256 239 8 chr12 115662995 115663112 -28619377 + L3 LINE CR1 1431 1574 -3 337 180 36 139 chr12 115663511 115663660 -28618829 + MIR SINE MIR 22 148 -114 2326 109 0 3 chr12 115663660 115663971 -28618518 + AluSx SINE Alu 1 310 -2 337 180 36 139 chr12 115663971 115664015 -28618474 + MIR SINE MIR 148 195 -67 212 290 81 0 chr12 115664247 115664309 -28618180 + L2 LINE L2 3201 3267 -5 207 242 48 3 chr12 115665209 115665283 -28617206 + MIR SINE MIR 58 135 -73 1089 182 83 57 chr12 115665593 115665965 -28616524 - L1MD2 LINE L1 -12 6230 5881 1381 197 42 4 chr12 115665965 115666135 -28616354 - AluJb SINE Alu 0 302 116 207 0 0 0 chr12 115666135 115666158 -28616331 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1381 197 42 4 chr12 115666158 115666271 -28616218 - AluJb SINE Alu -186 116 9 769 161 0 0 chr12 115666293 115666405 -28616084 - FLAM_C SINE Alu -17 126 15 405 261 4 10 chr12 115666417 115666537 -28615952 - L1MD2 LINE L1 -287 5891 5772 1190 163 30 5 chr12 115666545 115666747 -28615742 - AluJb SINE Alu -30 282 76 443 158 0 24 chr12 115666821 115666924 -28615565 - MER5A DNA MER1_type -86 103 4 1434 67 5 0 chr12 115667116 115667309 -28615180 + L1PA8 LINE L1 5896 6089 -83 1541 76 0 0 chr12 115667309 115667504 -28614985 + L1PA5 LINE L1 5956 6153 -1 487 346 16 16 chr12 115668244 115668426 -28614063 + L3 LINE CR1 904 1085 -492 320 278 102 0 chr12 115668432 115668540 -28613949 - LTR67 LTR ERVL 0 557 439 283 215 13 63 chr12 115668617 115668696 -28613793 + L3 LINE CR1 1180 1254 -323 456 269 81 0 chr12 115668933 115669093 -28613396 - LTR67 LTR ERVL -381 176 4 675 298 116 45 chr12 115669100 115669171 -28613318 + L3 LINE CR1 1098 1163 -414 2090 112 19 57 chr12 115669171 115669485 -28613004 + AluSx SINE Alu 1 302 -10 675 298 116 45 chr12 115669485 115669594 -28612895 + L3 LINE CR1 1163 1263 -314 1623 215 3 10 chr12 115669594 115669901 -28612588 + AluJb SINE Alu 1 305 -7 675 298 116 45 chr12 115669901 115670159 -28612330 + L3 LINE CR1 1263 1568 -9 370 248 186 19 chr12 115671246 115671407 -28611082 - MIR SINE MIR -55 207 20 1449 170 101 4 chr12 115671501 115671778 -28610711 + AluJo SINE Alu 1 304 -8 801 182 8 0 chr12 115671786 115671918 -28610571 + FLAM_A SINE Alu 1 133 0 254 259 43 52 chr12 115673648 115673764 -28608725 + MIR SINE MIR 22 136 -126 393 242 222 7 chr12 115673806 115673959 -28608530 + MER5A DNA MER1_type 4 189 0 2000 130 16 36 chr12 115674054 115674362 -28608127 + AluJb SINE Alu 1 302 -10 1965 161 55 6 chr12 115674889 115675237 -28607252 + MLT1A1 LTR MaLR 1 365 0 778 202 64 0 chr12 115675692 115675865 -28606624 + MER20 DNA MER1_type 36 219 0 843 132 7 37 chr12 115676221 115676357 -28606132 + AluSq/x SINE Alu 1 132 -180 26 50 0 0 chr12 115676372 115676412 -28606077 + AT_rich Low_complexity Low_complexity 1 40 0 511 288 49 80 chr12 115676807 115676853 -28605636 - MIR SINE MIR -31 231 185 2138 103 0 0 chr12 115676853 115677148 -28605341 - AluSx SINE Alu 0 307 13 511 288 49 80 chr12 115677148 115677326 -28605163 - MIR SINE MIR -77 185 13 297 279 64 24 chr12 115677402 115677544 -28604945 + MIR SINE MIR 5 154 -54 332 294 11 11 chr12 115677598 115677690 -28604799 - MIR3 SINE MIR -49 159 68 1978 151 10 3 chr12 115677929 115678234 -28604255 + AluJb SINE Alu 1 307 -5 2458 76 7 0 chr12 115678235 115678538 -28603951 + AluSp SINE Alu 1 305 -8 213 167 258 30 chr12 115678676 115678742 -28603747 - L2 LINE L2 0 3313 3233 205 295 11 63 chr12 115678859 115678954 -28603535 - L2 LINE L2 -1 3312 3223 1945 131 31 56 chr12 115679150 115679508 -28602981 - THE1B LTR MaLR -15 349 1 214 391 31 16 chr12 115679616 115679744 -28602745 + MIR3 SINE MIR 3 132 -76 344 253 0 0 chr12 115679746 115679829 -28602660 + MLT1K LTR MaLR 1 83 -472 303 264 124 60 chr12 115679834 115680099 -28602390 + L2 LINE L2 2573 2854 -460 197 336 69 9 chr12 115680496 115680612 -28601877 + L2 LINE L2 3184 3306 -7 881 298 145 19 chr12 115680632 115681108 -28601381 + MLT1K LTR MaLR 46 581 -7 2211 113 17 13 chr12 115681245 115681545 -28600944 - AluSx SINE Alu -11 301 1 504 267 33 0 chr12 115681585 115681705 -28600784 - L2 LINE L2 0 3272 3149 282 245 128 29 chr12 115682333 115682435 -28600054 - L2 LINE L2 0 3313 3202 233 128 0 0 chr12 115682664 115682703 -28599786 + L1MB3 LINE L1 6099 6137 -46 436 140 0 0 chr12 115682703 115682760 -28599729 + FRAM SINE Alu 75 131 -45 3083 126 30 72 chr12 115682762 115683315 -28599174 + LTR36 LTR ERV1 1 527 -84 2317 115 0 0 chr12 115683315 115683619 -28598870 - AluSx SINE Alu -8 304 1 3083 126 30 72 chr12 115683619 115683690 -28598799 + LTR36 LTR ERV1 527 599 -12 1812 141 18 25 chr12 115683700 115683849 -28598640 - AluJb SINE Alu 0 312 164 6539 145 101 19 chr12 115683849 115685030 -28597459 - MER52C LTR ERV1 0 1278 1 1812 141 18 25 chr12 115685030 115685164 -28597325 - AluJb SINE Alu -148 164 31 260 91 0 0 chr12 115685232 115685276 -28597213 + L1MB4 LINE L1 6136 6179 -1 1363 199 85 111 chr12 115685298 115685585 -28596904 - MLT1G LTR MaLR -38 552 332 2162 105 28 95 chr12 115685585 115685759 -28596730 + THE1B LTR MaLR 1 136 -228 2245 131 0 0 chr12 115685759 115686065 -28596424 - AluSg SINE Alu -4 306 1 2162 105 28 95 chr12 115686065 115686280 -28596209 + THE1B LTR MaLR 136 364 0 1363 199 85 111 chr12 115686280 115686604 -28595885 - MLT1G LTR MaLR -258 332 1 436 238 203 21 chr12 115687216 115687414 -28595075 + MIR SINE MIR 10 241 -21 186 273 15 61 chr12 115688495 115688561 -28593928 + L2 LINE L2 1127 1189 -2125 * 221 240 10 67 chr12 115688545 115688649 -28593840 - L2 LINE L2 -633 2681 2584 297 278 154 6 chr12 115688747 115688820 -28593669 - L2 LINE L2 -22 3291 3230 2747 32 0 13 chr12 115688820 115689134 -28593355 + AluY SINE Alu 2 311 0 297 278 154 6 chr12 115689134 115689222 -28593267 - L2 LINE L2 -83 3230 3106 637 244 55 39 chr12 115689499 115689679 -28592810 - MER5B DNA MER1_type -3 186 2 648 204 0 0 chr12 115689754 115689862 -28592627 + FRAM SINE Alu 1 108 -68 2572 71 3 0 chr12 115689884 115690195 -28592294 + AluSx SINE Alu 1 312 0 874 146 206 2 chr12 115691291 115691554 -28590935 + MER44D DNA MER2_type 1 605 0 2338 88 0 3 chr12 115691597 115691892 -28590597 + AluSx SINE Alu 1 294 -18 853 150 56 25 chr12 115692369 115692529 -28589960 + FRAM SINE Alu 1 164 -12 1725 135 4 0 chr12 115692600 115692852 -28589637 - AluSg SINE Alu -14 296 44 206 315 95 45 chr12 115693515 115693715 -28588774 - L2 LINE L2 -545 2769 2560 373 285 92 0 chr12 115694419 115694549 -28587940 - MER103 DNA DNA -23 143 2 788 139 29 44 chr12 115695474 115695611 -28586878 - FLAM_C SINE Alu -7 136 2 872 166 31 43 chr12 115695719 115695882 -28586607 + FRAM SINE Alu 1 161 -5 2320 73 0 36 chr12 115697109 115697412 -28585077 + AluY SINE Alu 2 293 -18 22 56 0 0 chr12 115697582 115697618 -28584871 + AT_rich Low_complexity Low_complexity 1 36 0 2406 99 0 0 chr12 115698164 115698467 -28584022 - AluSx SINE Alu -9 303 1 275 184 293 61 chr12 115699353 115699500 -28582989 + MER5A DNA MER1_type 9 189 0 2179 103 20 0 chr12 115700215 115700507 -28581982 + AluSx SINE Alu 1 298 -14 893 200 0 12 chr12 115700514 115700674 -28581815 + AluJb SINE Alu 137 294 -18 1715 167 3 38 chr12 115700709 115701026 -28581463 - AluJo SINE Alu -6 306 1 1910 138 11 0 chr12 115701116 115701415 -28581074 + AluSg SINE Alu 1 302 0 4506 128 57 42 chr12 115701931 115701976 -28580513 - L1MB3 LINE L1 0 6183 6140 2753 125 0 11 chr12 115701976 115702344 -28580145 - THE1B LTR MaLR 0 364 1 4506 128 57 42 chr12 115702344 115703039 -28579450 - L1MB3 LINE L1 -43 6140 5427 667 194 24 24 chr12 115703039 115703163 -28579326 - FLAM_A SINE Alu -9 124 1 4506 128 57 42 chr12 115703163 115703270 -28579219 - L1MB3 LINE L1 -756 5427 5323 979 161 0 7 chr12 115703271 115703426 -28579063 - AluJb SINE Alu -22 290 137 3095 185 34 93 chr12 115703477 115703813 -28578676 - L1MB3 LINE L1 -890 5256 4901 2056 137 3 0 chr12 115703813 115704112 -28578377 - AluSx SINE Alu -12 300 1 3095 185 34 93 chr12 115704112 115704419 -28578070 - L1MB3 LINE L1 -1245 4901 4686 2089 122 10 3 chr12 115704419 115704713 -28577776 - AluSx SINE Alu -16 296 1 3095 185 34 93 chr12 115704713 115705021 -28577468 - L1MB3 LINE L1 -1460 4686 4361 294 141 141 33 chr12 115705282 115705374 -28577115 - MIR SINE MIR -54 208 107 327 260 0 0 chr12 115706123 115706196 -28576293 - MLT1H LTR MaLR -456 93 21 15429 34 5 5 chr12 115707509 115710069 -28572420 - L1PA5 LINE L1 -1 6153 3620 21 0 0 0 chr12 115711647 115711668 -28570821 + AT_rich Low_complexity Low_complexity 1 21 0 294 208 0 0 chr12 115711818 115711871 -28570618 - L2 LINE L2 -4 3268 3216 22 0 0 0 chr12 115711926 115711948 -28570541 + AT_rich Low_complexity Low_complexity 1 22 0 703 198 0 0 chr12 115712707 115712818 -28569671 - FLAM_A SINE Alu -26 116 6 251 186 0 0 chr12 115712876 115712919 -28569570 + U2 snRNA snRNA 1 43 -145 3288 107 6 19 chr12 115713055 115713532 -28568957 - MER9 LTR ERVK -1 510 40 272 269 77 0 chr12 115714927 115715005 -28567484 - L2 LINE L2 0 3272 3189 2152 110 0 3 chr12 115716157 115716447 -28566042 + AluSq SINE Alu 1 289 -24 2178 108 16 0 chr12 115716693 115716999 -28565490 - AluSx SINE Alu -1 311 1 248 279 132 25 chr12 115717790 115717994 -28564495 + L1MEd LINE L1 1046 1271 -4934 2078 214 64 11 chr12 115717995 115718527 -28563962 + L1MB8 LINE L1 5595 6154 -24 1534 186 28 45 chr12 115718552 115718842 -28563647 + AluJb SINE Alu 1 285 -27 332 293 86 35 chr12 115718965 115719163 -28563326 + L1MEd LINE L1 1869 2076 -4320 2042 129 4 0 chr12 115719326 115719605 -28562884 + AluSx SINE Alu 1 280 -32 692 249 107 11 chr12 115719619 115719973 -28562516 + L1MEd LINE L1 3142 3529 -2686 251 320 10 0 chr12 115720337 115720434 -28562055 + ERVL LTR ERVL 813 910 -4854 303 312 32 40 chr12 115721081 115721206 -28561283 - LTR67 LTR ERVL -335 222 99 539 265 39 106 chr12 115721326 115721685 -28560804 - L1MC4a LINE L1 -1935 5873 5539 368 223 135 34 chr12 115722388 115722536 -28559953 - L1MC4a LINE L1 -746 5424 5262 551 267 94 64 chr12 115722652 115722894 -28559595 - L1MC4a LINE L1 -1127 5019 4786 1192 43 0 0 chr12 115722894 115723032 -28559457 - L1PA8 LINE L1 -7 6165 6028 551 267 94 64 chr12 115723032 115723311 -28559178 - L1MC4a LINE L1 -1360 4786 4517 1978 108 0 14 chr12 115723311 115723590 -28558899 - AluSx SINE Alu -1 311 37 1587 180 26 4 chr12 115723590 115723861 -28558628 - AluJo SINE Alu -30 282 5 551 267 94 64 chr12 115723861 115724101 -28558388 - L1MC4a LINE L1 -1628 4518 4233 232 284 37 0 chr12 115724115 115724196 -28558293 - L1MC4a LINE L1 -1988 4158 4075 2279 123 0 0 chr12 115724259 115724568 -28557921 - AluSc SINE Alu 0 309 1 21 36 0 0 chr12 115724578 115724606 -28557883 + AT_rich Low_complexity Low_complexity 1 28 0 329 47 0 0 chr12 115724609 115724652 -28557837 - AluSc SINE Alu -7 292 250 289 319 44 0 chr12 115724687 115724778 -28557711 + L2 LINE L2 2941 3035 -237 752 83 0 0 chr12 115724783 115724879 -28557610 + L1PA5 LINE L1 3 98 -6048 * 38285 46 8 6 chr12 115724877 115730401 -28552088 + L1PA5 LINE L1 623 6152 -2 1953 154 3 0 chr12 115730533 115730831 -28551658 - AluSx SINE Alu -13 299 1 2096 96 25 3 chr12 115731901 115732183 -28550306 - AluSq SINE Alu -9 304 17 470 136 0 0 chr12 115732691 115732757 -28549732 + AluS SINE Alu 2 67 -246 1731 156 32 65 chr12 115733130 115733501 -28548988 - MLT1B LTR MaLR -4 386 28 355 292 67 31 chr12 115734030 115734225 -28548264 - MIR SINE MIR -32 230 29 889 275 47 94 chr12 115736831 115737126 -28545363 - L1ME2 LINE L1 -209 5955 5699 1149 183 0 0 chr12 115737126 115737301 -28545188 - FAM SINE Alu 0 175 1 889 275 47 94 chr12 115737301 115737579 -28544910 - L1ME2 LINE L1 -465 5699 5409 1232 182 23 5 chr12 115737622 115737836 -28544653 + MER20 DNA MER1_type 2 219 0 213 178 0 22 chr12 115737839 115737884 -28544605 - MIR3 SINE MIR -14 194 151 257 228 13 51 chr12 115738111 115738190 -28544299 - MIR3 SINE MIR -48 160 85 1323 268 176 49 chr12 115738247 115739238 -28543251 - L2 LINE L2 -5 3308 2171 197 298 0 18 chr12 115739738 115739795 -28542694 + L3 LINE CR1 1462 1517 -60 643 293 0 18 chr12 115739799 115739963 -28542526 + MER5B DNA MER1_type 1 161 -17 766 191 92 40 chr12 115739966 115740139 -28542350 + MLT1A2 LTR MaLR 6 187 -187 517 210 8 16 chr12 115740152 115740276 -28542213 - MLT1B LTR MaLR -55 335 213 255 251 3 0 chr12 115740277 115740339 -28542150 + MLT1B LTR MaLR 312 379 0 362 319 48 48 chr12 115740709 115740919 -28541570 + L2 LINE L2 2540 2749 -565 397 183 0 0 chr12 115740920 115740991 -28541498 + L1MB2 LINE L1 6069 6139 -32 327 25 0 0 chr12 115741011 115741051 -28541438 + (CA)n Simple_repeat Simple_repeat 2 41 0 427 110 82 0 chr12 115742167 115742240 -28540249 - MER58B DNA MER1_type -1 340 262 1741 199 0 0 chr12 115742341 115742632 -28539857 + AluJb SINE Alu 1 291 -21 1396 214 17 31 chr12 115743564 115743854 -28538635 + AluJo SINE Alu 1 286 -26 1632 175 13 23 chr12 115744900 115745203 -28537286 - AluJo SINE Alu -12 300 1 2055 161 3 0 chr12 115745969 115746280 -28536209 + AluSx SINE Alu 1 312 0 2433 88 0 0 chr12 115746914 115747221 -28535268 + AluSx SINE Alu 1 307 -5 1441 144 25 84 chr12 115747427 115747747 -28534742 + AluJo SINE Alu 12 312 0 2100 136 3 0 chr12 115748625 115748920 -28533569 - AluSx SINE Alu -16 296 1 781 148 0 37 chr12 115749135 115749270 -28533219 + FLAM_C SINE Alu 1 130 -3 426 113 0 0 chr12 115749931 115749993 -28532496 - AluJb SINE Alu -12 300 239 724 189 0 15 chr12 115749994 115750126 -28532363 - AluJb SINE Alu -120 192 63 1377 135 14 5 chr12 115750129 115750344 -28532145 + AluY SINE Alu 94 310 -1 3246 165 88 6 chr12 115750353 115750977 -28531512 + L1MB7 LINE L1 5494 6168 -16 455 283 102 5 chr12 115751258 115751463 -28531026 + L2 LINE L2 2154 2378 -936 884 136 0 0 chr12 115751532 115751657 -28530832 - FLAM_C SINE Alu -6 137 13 276 257 46 37 chr12 115752289 115752398 -28530091 + L2 LINE L2 3180 3289 -24 1722 170 18 4 chr12 115752399 115752675 -28529814 + AluJb SINE Alu 1 280 -32 296 285 199 0 chr12 115753321 115753472 -28529017 + MIR SINE MIR 66 246 -16 807 167 15 0 chr12 115754064 115754196 -28528293 - FAM SINE Alu -27 158 25 620 164 10 0 chr12 115754196 115754300 -28528189 - FAM SINE Alu -73 112 8 33 25 0 0 chr12 115755728 115755768 -28526721 + AT_rich Low_complexity Low_complexity 1 40 0 592 257 120 80 chr12 115755814 115756251 -28526238 + L1ME4a LINE L1 5471 5941 -180 1032 170 103 100 chr12 115756251 115756551 -28525938 + AluJo SINE Alu 1 301 -1 592 257 120 80 chr12 115756551 115756740 -28525749 + L1ME4a LINE L1 5941 6121 0 26 30 0 0 chr12 115757519 115757552 -28524937 + AT_rich Low_complexity Low_complexity 1 33 0 2104 106 36 0 chr12 115757559 115757834 -28524655 - AluSx SINE Alu -27 285 1 1561 179 3 46 chr12 115758252 115758559 -28523930 - AluJb SINE Alu -18 294 1 2266 92 0 16 chr12 115758969 115759272 -28523217 + AluSq SINE Alu 6 303 -10 1203 121 0 0 chr12 115759274 115759431 -28523058 + AluSg/x SINE Alu 134 290 -20 215 292 71 18 chr12 115760237 115760350 -28522139 - MIR SINE MIR -64 198 80 296 285 199 0 chr12 115760680 115760831 -28521658 - MIR SINE MIR -16 246 66 277 259 0 12 chr12 115761315 115761400 -28521089 - MIR SINE MIR 0 262 179 1371 145 4 4 chr12 115761400 115761627 -28520862 - AluJo SINE Alu -1 311 85 432 279 41 20 chr12 115761627 115761774 -28520715 - MIR SINE MIR -98 164 15 1227 196 84 31 chr12 115762151 115762437 -28520052 + AluJo SINE Alu 3 303 -9 201 155 0 52 chr12 115764049 115764107 -28518382 + (CCCCG)n Simple_repeat Simple_repeat 2 56 0 3812 192 66 21 chr12 115765493 115765603 -28516886 + L1ME1 LINE L1 5006 5110 -1056 1878 139 25 4 chr12 115765603 115765884 -28516605 + AluJo SINE Alu 7 293 -19 3812 192 66 21 chr12 115765884 115766325 -28516164 + L1ME1 LINE L1 5110 5530 -636 2054 149 7 0 chr12 115766325 115766634 -28515855 - AluSx SINE Alu -1 311 1 3812 192 66 21 chr12 115766634 115767185 -28515304 + L1ME1 LINE L1 5530 6160 -6 214 333 71 0 chr12 115767350 115767434 -28515055 + L2 LINE L2 3182 3271 -1 1630 183 30 20 chr12 115767600 115767900 -28514589 + AluJb SINE Alu 1 303 -9 1941 122 11 109 chr12 115767953 115768321 -28514168 - MER7A DNA MER2_type -16 330 1 1327 265 33 28 chr12 115768739 115769165 -28513324 - L2 LINE L2 -5 3308 2881 273 280 0 0 chr12 115769167 115769247 -28513242 + MER3 DNA MER1_type 41 2334 0 255 224 0 0 chr12 115769341 115769390 -28513099 + MLT1H LTR MaLR 91 139 -410 1971 130 49 3 chr12 115769714 115769998 -28512491 - AluJb SINE Alu -15 297 1 4533 132 46 82 chr12 115770183 115771105 -28511384 - MER21A LTR ERV1 -43 888 1 681 294 109 22 chr12 115771566 115771616 -28510873 + L1M4 LINE L1 3472 3516 -2630 1683 181 38 0 chr12 115771616 115771903 -28510586 + AluJb SINE Alu 1 298 -14 681 294 109 22 chr12 115771903 115772349 -28510140 + L1M4 LINE L1 3516 4011 -2135 1908 147 0 17 chr12 115772394 115772694 -28509795 + AluSc SINE Alu 1 295 -14 346 248 28 9 chr12 115772697 115772806 -28509683 + L1ME3 LINE L1 6051 6161 -1 377 304 28 61 chr12 115772880 115772977 -28509512 + L1M4 LINE L1 4370 4469 -1677 180 0 0 0 chr12 115772977 115772997 -28509492 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2334 83 0 0 chr12 115772997 115773286 -28509203 - AluSc SINE Alu -20 289 1 377 304 28 61 chr12 115773286 115773401 -28509088 + L1M4 LINE L1 4467 4576 -1570 1662 187 0 3 chr12 115773409 115773692 -28508797 - AluJb SINE Alu -30 282 1 228 283 0 0 chr12 115773872 115773925 -28508564 + MER91 DNA MER1_type 138 190 0 2428 76 10 10 chr12 115774397 115774701 -28507788 - AluSp SINE Alu -9 304 1 204 40 0 0 chr12 115774731 115774756 -28507733 + (GA)n Simple_repeat Simple_repeat 1 25 0 369 279 139 0 chr12 115775134 115775299 -28507190 - L1MC4a LINE L1 -1899 5909 5722 1916 133 55 3 chr12 115775311 115775604 -28506885 - AluSg SINE Alu -2 308 1 2245 114 0 3 chr12 115775609 115775907 -28506582 - AluSx SINE Alu -13 299 3 930 141 20 7 chr12 115776056 115776244 -28506245 + AluSg/x SINE Alu 132 321 0 302 265 12 0 chr12 115776277 115776360 -28506129 - L1MC4a LINE L1 -2290 5518 5435 319 268 57 32 chr12 115776361 115776518 -28505971 + L2 LINE L2 2641 2801 -513 799 164 0 8 chr12 115776663 115776797 -28505692 - FLAM_C SINE Alu 0 133 1 584 160 11 0 chr12 115780811 115780905 -28501584 + AluJ/FLAM SINE Alu 2 96 -216 1427 200 0 24 chr12 115781001 115781296 -28501193 + AluJo SINE Alu 1 288 -24 213 39 0 0 chr12 115781698 115781724 -28500765 + (CACCC)n Simple_repeat Simple_repeat 1 26 0 256 290 53 15 chr12 115781774 115781905 -28500584 + MIR3 SINE MIR 48 183 -25 1769 137 32 11 chr12 115783022 115783300 -28499189 + AluJo SINE Alu 5 288 -24 2049 134 3 3 chr12 115784245 115784560 -28497929 - AluSx SINE Alu 0 315 1 1580 182 64 34 chr12 115785005 115785363 -28497126 + MLT1A2 LTR MaLR 1 369 -5 1757 125 22 72 chr12 115786343 115786663 -28495826 - AluJo SINE Alu -4 308 5 1558 184 24 31 chr12 115786675 115786969 -28495520 - AluJo SINE Alu -20 292 1 411 241 165 13 chr12 115786989 115787147 -28495342 - MIR SINE MIR -70 192 11 372 270 57 19 chr12 115787666 115787825 -28494664 + MIR SINE MIR 47 211 -51 740 254 128 47 chr12 115787992 115788293 -28494196 - MLT1H LTR MaLR -6 549 169 2392 69 10 0 chr12 115788293 115788583 -28493906 + AluY SINE Alu 1 293 -18 740 254 128 47 chr12 115788583 115788767 -28493722 - MLT1H LTR MaLR -386 169 1 412 210 26 1 chr12 115788797 115788907 -28493582 - L1MC4 LINE L1 0 8038 7880 528 124 247 21 chr12 115789000 115789097 -28493392 - FLAM_C SINE Alu -14 119 1 1968 153 3 0 chr12 115789107 115789414 -28493075 - AluSx SINE Alu -4 308 1 1707 266 82 16 chr12 115789414 115789963 -28492526 - L1MC4 LINE L1 -406 7636 7052 1362 171 25 13 chr12 115789992 115790231 -28492258 - AluJo SINE Alu -25 287 46 312 27 0 0 chr12 115790231 115790268 -28492221 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 1806 148 11 0 chr12 115790268 115790545 -28491944 - AluJo SINE Alu -32 280 1 621 168 61 15 chr12 115790551 115790682 -28491807 - L1MC4 LINE L1 -1031 7011 6875 419 0 20 0 chr12 115790703 115790754 -28491735 + (CA)n Simple_repeat Simple_repeat 2 53 0 201 294 0 0 chr12 115791005 115791056 -28491433 + MIR SINE MIR 210 260 -2 258 288 72 14 chr12 115791602 115791741 -28490748 + MIR3 SINE MIR 61 207 -1 2505 131 69 5 chr12 115791780 115792185 -28490304 - MER61C LTR ERV1 -3 431 1 18846 106 28 40 chr12 115792185 115794058 -28488431 - MER61C-int LTR ERV1 0 5217 3392 2132 120 0 3 chr12 115794058 115794359 -28488130 + AluSx SINE Alu 11 310 -2 18846 106 28 40 chr12 115794359 115795439 -28487050 - MER61C-int LTR ERV1 -1825 3392 2300 1207 146 10 5 chr12 115795554 115795759 -28486730 + AluSg/x SINE Alu 93 298 -14 1455 193 139 17 chr12 115795807 115796160 -28486329 - MSTD LTR MaLR 0 396 1 365 288 62 17 chr12 115796181 115796358 -28486131 - MLT1J LTR MaLR 0 511 327 530 165 239 0 chr12 115796366 115796475 -28486014 + MER58A DNA MER1_type 1 135 0 254 224 0 0 chr12 115796661 115796710 -28485779 - MLT1J LTR MaLR -410 139 91 1877 103 0 4 chr12 115796877 115797140 -28485349 + AluY SINE Alu 1 262 -49 389 271 57 48 chr12 115797356 115797537 -28484952 + MER5A DNA MER1_type 1 170 -8 276 231 259 28 chr12 115797704 115797812 -28484677 + MER5A DNA MER1_type 57 189 0 1943 160 20 0 chr12 115849281 115849587 -28432902 - AluSx SINE Alu 0 312 1 2098 106 4 0 chr12 115849985 115850260 -28432229 + AluSx SINE Alu 21 296 -16 229 196 0 39 chr12 115850306 115850357 -28432132 + L1 LINE L1 3526 3574 -2572 * 368 250 40 40 chr12 115850337 115850489 -28432000 + L1MC/D LINE L1 5588 5739 -2046 2588 47 3 3 chr12 115850532 115850831 -28431658 + AluY SINE Alu 1 299 -12 968 196 22 57 chr12 115850839 115851069 -28431420 + AluJb SINE Alu 87 308 -4 308 273 126 33 chr12 115851656 115851839 -28430650 + MIR SINE MIR 46 245 -17 1726 182 3 14 chr12 115852762 115853058 -28429431 + AluJo SINE Alu 1 293 -19 2711 264 61 70 chr12 115854133 115854479 -28428010 + ERVL LTR ERVL 3605 3953 -1811 2285 125 0 3 chr12 115854479 115854792 -28427697 + AluSx SINE Alu 1 312 0 2711 264 61 70 chr12 115854792 115855102 -28427387 + ERVL LTR ERVL 3953 4264 -1500 1511 171 70 89 chr12 115855102 115855542 -28426947 + MSTB1 LTR MaLR 1 432 0 2711 264 61 70 chr12 115855542 115856049 -28426440 + ERVL LTR ERVL 4264 4758 -1006 2015 214 69 26 chr12 115856064 115856526 -28425963 - MER74A LTR ERVL -17 541 60 3187 117 22 70 chr12 115856950 115857533 -28424956 - LTR10A LTR ERV1 -54 555 1 1463 197 46 20 chr12 115857612 115857944 -28424545 - AluJo SINE Alu 0 312 1 256 241 160 19 chr12 115858306 115858496 -28423993 + LTR41 LTR ERVL 584 793 -2 347 237 35 74 chr12 115858617 115858806 -28423683 + L1M4c LINE L1 1405 1591 -4837 1585 182 7 14 chr12 115858807 115859082 -28423407 + AluJb SINE Alu 1 273 -39 2365 174 32 16 chr12 115859082 115859575 -28422914 + Charlie5 DNA MER1_type 1066 1566 -1046 676 206 32 7 chr12 115859644 115859799 -28422690 + Charlie5 DNA MER1_type 1741 1899 -713 362 133 56 67 chr12 115860357 115860447 -28422042 - MER20 DNA MER1_type -130 89 1 2238 120 0 0 chr12 115860496 115860795 -28421694 - AluSq SINE Alu -14 299 1 2477 81 0 0 chr12 115860986 115861295 -28421194 + LTR12 LTR ERV1 406 714 0 17460 100 19 6 chr12 115861295 115863707 -28418782 + HERV9 LTR ERV1 1 2445 -5954 7329 78 1 9 chr12 115863700 115864651 -28417838 + HERV9 LTR ERV1 3445 4387 -4012 * 3807 134 9 2 chr12 115864655 115865216 -28417273 - HERV30 LTR ERV1 -722 7535 6971 453 143 26 0 chr12 115865221 115865298 -28417191 + LTR5 LTR ERVK 4 82 -887 1769 106 51 4 chr12 115865298 115865552 -28416937 - HERVK LTR ERVK -6977 266 1 5721 155 21 20 chr12 115865552 115866520 -28415969 - LTR5 LTR ERVK 0 969 1 2774 160 11 0 chr12 115866526 115866977 -28415512 - HERV30 LTR ERV1 -1289 6968 6513 10862 99 16 9 chr12 115867068 115867882 -28414607 - HERV30 LTR ERV1 -1748 6509 5679 2901 10 0 0 chr12 115867882 115868189 -28414300 + AluYb8 SINE Alu 1 307 -11 10862 99 16 9 chr12 115868189 115868846 -28413643 - HERV30 LTR ERV1 -2578 5679 5028 3652 67 2 0 chr12 115868847 115869308 -28413181 - L1PA5 LINE L1 -2 6152 5691 779 142 0 0 chr12 115869310 115869437 -28413052 + FRAM SINE Alu 49 175 -1 467 251 22 77 chr12 115869881 115870064 -28412425 - MIR SINE MIR -67 195 23 828 217 88 18 chr12 115870713 115870939 -28411550 - MIR SINE MIR -19 243 2 240 278 78 17 chr12 115871626 115871741 -28410748 + L2 LINE L2 2394 2515 -799 182 292 34 22 chr12 115871755 115871844 -28410645 + MIR SINE MIR 23 112 -150 2026 107 0 0 chr12 115872846 115873107 -28409382 - AluSc SINE Alu -16 293 33 226 236 109 55 chr12 115873470 115873580 -28408909 + MIR SINE MIR 82 197 -65 182 292 34 22 chr12 115873615 115873704 -28408785 - MIR SINE MIR -150 112 23 22 0 0 0 chr12 115873835 115873857 -28408632 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 115874196 115874219 -28408270 + AT_rich Low_complexity Low_complexity 1 23 0 290 122 0 20 chr12 115874354 115874403 -28408086 - MADE1 DNA Mariner -30 50 3 1710 298 25 11 chr12 115874808 115875539 -28406950 + L1ME LINE L1 4219 4959 -1187 904 267 11 22 chr12 115876321 115876646 -28405843 + L1ME LINE L1 5290 5606 -560 546 230 34 14 chr12 115876647 115876795 -28405694 + L1MA10 LINE L1 6175 6325 -9 568 205 23 171 chr12 115878200 115878463 -28404026 - MIR SINE MIR -18 244 21 431 249 267 25 chr12 115879271 115879556 -28402933 + L2 LINE L2 1638 1991 -1323 2249 88 3 47 chr12 115879955 115880272 -28402217 - AluSg SINE Alu -7 303 1 23 33 0 0 chr12 115880927 115880957 -28401532 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr12 115881029 115881071 -28401418 + AT_rich Low_complexity Low_complexity 1 42 0 2117 96 17 0 chr12 115882018 115882310 -28400179 + AluSx SINE Alu 7 303 -9 482 79 34 101 chr12 115884068 115884157 -28398332 - AluSq SINE Alu -110 203 121 781 11 0 0 chr12 115884161 115884251 -28398238 - L1HS LINE L1 -2 6153 6064 1013 90 0 8 chr12 115884256 115884390 -28398099 - AluSq SINE Alu -179 133 1 372 115 0 0 chr12 115885577 115885584 -28396905 + (GA)n Simple_repeat Simple_repeat 1 7 -54 1855 154 7 0 chr12 115885584 115885869 -28396620 + AluSx SINE Alu 17 303 -9 372 115 0 0 chr12 115885869 115885922 -28396567 + (GA)n Simple_repeat Simple_repeat 6 61 0 758 222 176 23 chr12 115886486 115886838 -28395651 - LTR56 LTR ERV1 0 445 40 1134 177 8 31 chr12 115887321 115887575 -28394914 + Tigger1 DNA MER2_type 1 248 -2170 2729 116 41 55 chr12 115887575 115888068 -28394421 + LTR19A LTR ERV1 1 486 0 8654 102 28 21 chr12 115888068 115889487 -28393002 + LTR19A-int LTR ERV1 1 1503 -4083 2182 113 3 0 chr12 115889487 115889806 -28392683 - AluSx SINE Alu 0 320 1 8654 102 28 21 chr12 115889806 115890517 -28391972 + LTR19A-int LTR ERV1 1503 2207 -3379 2525 93 0 3 chr12 115890549 115890894 -28391595 + L1PA8 LINE L1 5829 6172 0 2291 52 0 0 chr12 115891083 115891352 -28391137 + AluY SINE Alu 1 269 -42 242 0 0 0 chr12 115891352 115891380 -28391109 + AluY SINE Alu 254 281 -20 1200 69 0 0 chr12 115891383 115891542 -28390947 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 693 192 0 0 chr12 115892039 115892164 -28390325 + AluSg/x SINE Alu 134 258 -54 450 93 0 0 chr12 115894546 115894600 -28387889 + AluSc SINE Alu 60 113 -196 1601 101 57 0 chr12 115895271 115895498 -28386991 - AluSc SINE Alu -14 295 56 2423 102 0 0 chr12 115895689 115896002 -28386487 - AluSq SINE Alu 0 313 1 315 0 0 0 chr12 115896308 115896343 -28386146 + (CA)n Simple_repeat Simple_repeat 2 36 0 279 0 0 0 chr12 115896342 115896373 -28386116 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 1440 242 61 16 chr12 115896343 115896790 -28385699 + L1M4 LINE L1 3966 4404 -1742 189 339 15 0 chr12 115896790 115896855 -28385634 + L2 LINE L2 3205 3270 -2 212 275 77 44 chr12 115896856 115896947 -28385542 - L2 LINE L2 -473 2841 2748 500 272 44 6 chr12 115897079 115897237 -28385252 - MIR SINE MIR -26 236 73 1586 261 72 7 chr12 115897639 115898187 -28384302 - L1ME1 LINE L1 -153 6013 5557 635 230 24 20 chr12 115898199 115898406 -28384083 + L1M4 LINE L1 1735 2035 -4349 3626 131 22 0 chr12 115898406 115898988 -28383501 + L1PA15-16 LINE L1 1951 2545 -4304 384 55 8 8 chr12 115899332 115899396 -28383093 + L1PA15-16 LINE L1 2528 2591 -4258 * 17968 101 10 1 chr12 115899389 115901971 -28380518 + L1P LINE L1 1771 4373 -1773 286 239 0 26 chr12 115901971 115902088 -28380401 + pTR5 LTR ERV1 747 860 -1578 5458 93 97 4 chr12 115902412 115903168 -28379321 + LTR12 LTR ERV1 1 826 0 7985 78 22 3 chr12 115903168 115904948 -28377541 + L1PA7 LINE L1 4364 6150 -4 1570 157 14 60 chr12 115904989 115905340 -28377149 - L1MA9 LINE L1 -32 6280 5946 4723 135 51 13 chr12 115905350 115906179 -28376310 - Tigger3b DNA MER2_type -371 860 1 2428 155 27 0 chr12 115906179 115906592 -28375897 - L1MA9 LINE L1 -506 5785 5362 2341 239 19 11 chr12 115906584 115907221 -28375268 + L1M4 LINE L1 2573 3214 -3168 * 724 214 34 47 chr12 115907945 115908179 -28374310 + L1MA9 LINE L1 5866 6096 -216 431 209 94 94 chr12 115908182 115908383 -28374106 + L1MA9 LINE L1 6046 6246 -66 343 256 78 0 chr12 115908384 115908513 -28373976 - MER3 DNA MER1_type -87 122 31 22 0 0 0 chr12 115908562 115908584 -28373905 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr12 115908731 115908775 -28373714 + (CA)n Simple_repeat Simple_repeat 2 45 0 206 239 22 0 chr12 115909141 115909187 -28373302 - L3 LINE CR1 -401 1176 1130 487 157 41 6 chr12 115909200 115909312 -28373177 - MSTC LTR MaLR -262 112 1 2232 114 7 3 chr12 115909453 115909760 -28372729 + AluSc SINE Alu 1 308 -1 1642 139 89 14 chr12 115910149 115910429 -28372060 - AluJb SINE Alu -1 311 11 343 225 202 31 chr12 115910429 115910558 -28371931 - MER58A DNA MER1_type -32 192 42 202 125 75 25 chr12 115911809 115911849 -28370640 - MIR SINE MIR -112 150 109 2303 93 0 13 chr12 115911871 115912182 -28370307 - AluSc SINE Alu 0 309 3 27 81 0 0 chr12 115913174 115913236 -28369253 + AT_rich Low_complexity Low_complexity 1 62 0 2128 137 0 3 chr12 115913941 115914254 -28368235 - AluSx SINE Alu 0 312 1 1691 141 46 14 chr12 115914530 115914814 -28367675 - L1MA5A LINE L1 -4 6293 6001 203 206 44 15 chr12 115915061 115915129 -28367360 + (TA)n Simple_repeat Simple_repeat 1 70 0 182 103 73 44 chr12 115915137 115915205 -28367284 + (TATAA)n Simple_repeat Simple_repeat 3 72 0 2053 124 0 33 chr12 115915726 115916033 -28366456 - AluSx SINE Alu -15 297 1 1893 142 7 7 chr12 115917085 115917374 -28365115 + AluSx SINE Alu 3 291 -21 180 231 26 0 chr12 115919539 115919578 -28362911 + MER5B DNA MER1_type 1 40 -138 492 238 0 0 chr12 115919662 115919767 -28362722 - L1PB4 LINE L1 -12 6144 6040 1497 169 13 50 chr12 115922011 115922313 -28360176 - AluJb SINE Alu -21 291 1 563 170 80 101 chr12 115922629 115922670 -28359819 - L1M4 LINE L1 -3176 2970 2930 805 177 0 0 chr12 115922670 115922794 -28359695 - FLAM_A SINE Alu -9 124 1 563 170 80 101 chr12 115922794 115923028 -28359461 - L1M4 LINE L1 -3216 2930 2701 2058 86 0 0 chr12 115923648 115923936 -28358553 + AluSg SINE Alu 26 313 0 826 171 0 29 chr12 115924046 115924186 -28358303 + AluJo SINE Alu 1 136 -176 809 248 135 7 chr12 115924983 115925265 -28357224 - MER33 DNA MER1_type -6 318 1 2325 82 0 20 chr12 115925882 115926186 -28356303 - AluSg SINE Alu -12 298 1 350 197 121 0 chr12 115926294 115926360 -28356129 + MER3 DNA MER1_type 37 110 -99 738 107 57 7 chr12 115926365 115926505 -28355984 + MER3 DNA MER1_type 2430 2576 0 428 211 232 21 chr12 115926523 115926665 -28355824 - MER5A DNA MER1_type -3 186 15 2395 98 0 0 chr12 115927671 115927978 -28354511 - AluSc SINE Alu -2 307 1 418 195 42 8 chr12 115927978 115928096 -28354393 - L1M4 LINE L1 -3226 2920 2799 1059 216 23 4 chr12 115928441 115928700 -28353789 + L1MA4 LINE L1 6036 6299 -1 2131 169 8 32 chr12 115929267 115929640 -28352849 + MLT1A1 LTR MaLR 2 365 0 541 270 26 21 chr12 115929723 115929956 -28352533 + L1ME LINE L1 5451 5684 -486 465 305 93 42 chr12 115929978 115930214 -28352275 + MIR SINE MIR 15 262 0 2555 74 0 0 chr12 115930349 115930658 -28351831 - AluY SINE Alu -2 309 1 294 243 18 45 chr12 115930738 115930849 -28351640 - LTR41 LTR ERVL -6 767 660 2572 53 0 0 chr12 115931291 115931592 -28350897 - AluY SINE Alu -10 301 1 232 243 117 58 chr12 115931907 115932010 -28350479 + L2 LINE L2 3145 3253 -19 22 0 0 0 chr12 115932062 115932084 -28350405 + AT_rich Low_complexity Low_complexity 1 22 0 3123 124 13 2 chr12 115932085 115932546 -28349943 - L1MA3 LINE L1 -2 6303 5838 2094 158 59 35 chr12 115933095 115933638 -28348851 - MLT2A2 LTR ERVL 0 554 1 23 0 0 0 chr12 115934299 115934322 -28348167 + AT_rich Low_complexity Low_complexity 1 23 0 659 225 22 16 chr12 115934509 115934691 -28347798 + L1MD3 LINE L1 7323 7505 -490 21 0 0 0 chr12 115934930 115934951 -28347538 + AT_rich Low_complexity Low_complexity 1 21 0 2177 88 29 0 chr12 115935309 115935606 -28346883 - AluSc SINE Alu 0 305 1 1660 164 25 0 chr12 115935802 115935975 -28346514 - AluJo SINE Alu -14 298 114 188 35 35 0 chr12 115935975 115936004 -28346485 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 1660 164 25 0 chr12 115936004 115936110 -28346379 - AluJo SINE Alu -198 114 12 881 201 11 0 chr12 115936217 115936391 -28346098 - FRAM SINE Alu -8 168 1 25 0 0 0 chr12 115936557 115936582 -28345907 + AT_rich Low_complexity Low_complexity 1 25 0 2494 113 126 5 chr12 115938455 115938837 -28343652 + MSTA LTR MaLR 1 428 0 369 143 60 12 chr12 115939104 115939188 -28343301 - L1MC5 LINE L1 -45 7916 7829 858 202 87 87 chr12 115939288 115939634 -28342855 - L1MC5 LINE L1 -919 7042 6697 267 310 133 0 chr12 115940219 115940332 -28342157 + L2 LINE L2 3143 3270 -2 309 305 144 6 chr12 115940433 115940600 -28341889 + MIR SINE MIR 72 261 -1 197 234 21 0 chr12 115940707 115940754 -28341735 - L2 LINE L2 -15 3257 3210 23 54 0 0 chr12 115941575 115941612 -28340877 + GC_rich Low_complexity Low_complexity 1 37 0 2911 7 0 0 chr12 115942090 115942400 -28340089 - AluYa5 SINE Alu -1 310 1 200 244 0 0 chr12 115943055 115943096 -28339393 + (TA)n Simple_repeat Simple_repeat 2 42 0 2053 180 24 32 chr12 115943318 115943665 -28338824 - L1MB5 LINE L1 0 6174 5829 1943 185 22 11 chr12 115943665 115944022 -28338467 + MLT1A1 LTR MaLR 5 365 0 2053 180 24 32 chr12 115944022 115944116 -28338373 - L1MB5 LINE L1 -345 5829 5736 207 114 0 0 chr12 115944672 115944707 -28337782 + (TG)n Simple_repeat Simple_repeat 2 36 0 303 250 0 0 chr12 115944721 115944785 -28337704 + MLT1E1 LTR MaLR 571 634 -20 374 179 13 13 chr12 115946129 115946207 -28336282 - MIR SINE MIR -164 98 21 248 377 65 7 chr12 115946661 115946799 -28335690 + L2 LINE L2 3112 3257 -15 2531 94 35 27 chr12 115947315 115947718 -28334771 - L1PA11 LINE L1 -7 6167 5762 329 209 28 46 chr12 115950849 115950975 -28331514 + L1MC/D LINE L1 5601 5718 -498 238 279 82 32 chr12 115951033 115951191 -28331298 - L1MDa LINE L1 -4179 2361 2196 5999 48 3 132 chr12 115951921 115952869 -28329620 - LTR12 LTR ERV1 0 826 1 847 138 69 0 chr12 115953717 115953816 -28328673 + L1PA16 LINE L1 5898 5989 -177 186 43 0 0 chr12 115953816 115953839 -28328650 + (GGGA)n Simple_repeat Simple_repeat 1 23 0 847 138 69 0 chr12 115953839 115953956 -28328533 + L1PA16 LINE L1 5989 6164 -2 2307 96 3 0 chr12 115954014 115954307 -28328182 + AluSx SINE Alu 2 295 -17 1709 143 31 14 chr12 115954648 115954935 -28327554 + Tigger2 DNA MER2_type 2427 2718 0 1527 196 13 39 chr12 115954990 115955301 -28327188 - AluJo SINE Alu -9 303 1 300 120 0 0 chr12 115955353 115955403 -28327086 + (TG)n Simple_repeat Simple_repeat 2 51 0 356 237 114 0 chr12 115955580 115955694 -28326795 + L2 LINE L2 3142 3268 -4 435 269 26 39 chr12 115955713 115955869 -28326620 + MER90 LTR ERV1 1 154 -421 485 259 23 24 chr12 115955923 115956197 -28326292 + MER90 LTR ERV1 289 602 -12 708 268 13 18 chr12 115956262 115956490 -28325999 - MIR SINE MIR -21 241 15 180 125 0 0 chr12 115956580 115956612 -28325877 + (GGAGAA)n Simple_repeat Simple_repeat 4 35 0 234 163 31 54 chr12 115956874 115957003 -28325486 + GA-rich Low_complexity Low_complexity 1 126 0 239 315 0 0 chr12 115957004 115957096 -28325393 - L1MC4 LINE L1 -1337 6705 6614 232 247 47 0 chr12 115957050 115957135 -28325354 + L1MC4 LINE L1 6614 6702 -1340 * 191 59 0 29 chr12 115957158 115957192 -28325297 + (CA)n Simple_repeat Simple_repeat 2 34 0 557 221 184 37 chr12 115957540 115957757 -28324732 + MIR SINE MIR 8 256 -6 3470 137 18 59 chr12 115957788 115957994 -28324495 + MER6A DNA MER2_type 1 214 -651 2017 146 0 0 chr12 115957994 115958288 -28324201 + AluJb SINE Alu 1 294 -18 3470 137 18 59 chr12 115958288 115958555 -28323934 + MER6A DNA MER2_type 214 444 -421 2576 57 0 0 chr12 115958555 115958856 -28323633 + AluY SINE Alu 1 301 -10 3470 137 18 59 chr12 115958856 115959010 -28323479 + MER6A DNA MER2_type 444 603 -2 209 273 136 0 chr12 115959473 115959583 -28322906 - MIR SINE MIR -12 250 126 332 294 89 7 chr12 115960301 115960447 -28322042 - MIR SINE MIR -51 211 54 270 250 0 0 chr12 115960633 115960705 -28321784 + L2 LINE L2 3201 3272 0 2009 249 86 30 chr12 115961811 115962305 -28320184 - MER69 DNA AcHobo -9 2517 1961 351 0 0 0 chr12 115962305 115962344 -28320145 + (TG)n Simple_repeat Simple_repeat 1 39 0 2009 249 86 30 chr12 115962344 115962637 -28319852 - MER69 DNA AcHobo -565 1961 1686 1168 291 24 57 chr12 115962641 115963095 -28319394 - MER69 DNA AcHobo -1832 694 256 449 143 0 0 chr12 115963150 115963220 -28319269 - L1PA8A LINE L1 -2634 3512 3443 12773 108 1 12 chr12 115963220 115965084 -28317405 + L1PA8A LINE L1 3527 5381 -750 2291 109 7 0 chr12 115965084 115965378 -28317111 + AluSg SINE Alu 1 296 -14 12773 108 1 12 chr12 115965378 115966117 -28316372 + L1PA8A LINE L1 5381 6127 -4 992 279 104 27 chr12 115966256 115967088 -28315401 + L1ME3A LINE L1 4900 5790 -380 212 160 64 32 chr12 115967462 115967556 -28314933 + (TTTG)n Simple_repeat Simple_repeat 4 100 0 180 77 0 0 chr12 115967766 115967792 -28314697 + (GTGTG)n Simple_repeat Simple_repeat 3 28 0 1477 202 13 13 chr12 115967806 115968123 -28314366 + MER44D DNA MER2_type 23 609 0 412 250 92 0 chr12 115968123 115968243 -28314246 + L1ME3A LINE L1 5782 5912 -258 409 221 74 27 chr12 115968244 115968393 -28314096 - MIR SINE MIR -34 228 73 924 203 105 52 chr12 115968911 115969216 -28313273 - MER33 DNA MER1_type 0 324 4 533 281 14 0 chr12 115969331 115969470 -28313019 - MIR SINE MIR -81 181 41 337 229 114 29 chr12 115969850 115969955 -28312534 + MER81 DNA DNA 1 114 0 881 324 34 41 chr12 115970138 115970649 -28311840 + L2 LINE L2 2618 3121 -151 288 0 0 0 chr12 115970649 115970681 -28311808 + (TG)n Simple_repeat Simple_repeat 2 33 0 881 324 34 41 chr12 115970681 115970830 -28311659 + L2 LINE L2 3121 3270 -2 1643 194 7 7 chr12 115971052 115971376 -28311113 - AluJo SINE Alu 0 324 1 2406 87 0 7 chr12 115971392 115971691 -28310798 + AluSp SINE Alu 1 297 -16 255 282 12 0 chr12 115971894 115971979 -28310510 + MIR SINE MIR 49 134 -128 359 296 89 7 chr12 115972826 115972961 -28309528 + MIR SINE MIR 21 166 -96 380 186 0 161 chr12 115973002 115973126 -28309363 - MER102a DNA MER1_type -15 315 212 261 263 0 0 chr12 115973294 115973351 -28309138 - MER102a DNA MER1_type -149 181 125 1953 136 3 17 chr12 115973385 115973686 -28308803 - AluJo SINE Alu -15 297 1 342 227 34 0 chr12 115973730 115973818 -28308671 + MIR SINE MIR 75 165 -97 440 231 88 27 chr12 115973818 115973965 -28308524 - MIR SINE MIR -43 219 64 421 269 46 51 chr12 115974821 115975037 -28307452 + MIR SINE MIR 17 231 -31 327 263 81 73 chr12 115975394 115975641 -28306848 + MLT1H LTR MaLR 74 322 -227 228 217 130 0 chr12 115975703 115975772 -28306717 + MLT1I LTR MaLR 323 400 -9 666 304 16 5 chr12 115975846 115976040 -28306449 - LTR33 LTR ERVL -318 203 8 2641 127 33 28 chr12 115976041 115976467 -28306022 - MSTA LTR MaLR 0 428 1 253 336 134 9 chr12 115976940 115977172 -28305317 + MIR SINE MIR 1 261 -1 307 350 12 12 chr12 115977733 115977893 -28304596 + (CCCA)n Simple_repeat Simple_repeat 2 161 0 * 321 280 27 20 chr12 115977801 115977951 -28304538 + (TCCA)n Simple_repeat Simple_repeat 1 151 0 385 232 22 54 chr12 115977974 115978159 -28304330 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 256 282 14 0 chr12 115978174 115978245 -28304244 - L2 LINE L2 0 3313 3242 347 393 16 6 chr12 115978374 115978557 -28303932 + MIR SINE MIR 13 197 -65 1352 233 43 3 chr12 115978581 115978903 -28303586 + MLT1E3 LTR MaLR 290 624 0 202 259 0 19 chr12 115978906 115978960 -28303529 - MIR SINE MIR -158 104 52 635 294 38 5 chr12 115980125 115980336 -28302153 - MIR SINE MIR -37 225 8 204 40 0 0 chr12 115980577 115980602 -28301887 + (CAATT)n Simple_repeat Simple_repeat 3 27 0 641 330 70 30 chr12 115980605 115981269 -28301220 - L2 LINE L2 0 3313 2609 392 295 119 88 chr12 115981307 115981693 -28300796 + L2 LINE L2 2863 3260 -12 2243 108 0 7 chr12 115981794 115982089 -28300400 - AluSc SINE Alu -16 293 1 450 318 24 14 chr12 115982137 115982348 -28300141 - MIR SINE MIR -30 232 20 245 320 156 8 chr12 115982376 115982498 -28299991 - L2 LINE L2 0 3272 3133 7481 180 37 12 chr12 115983558 115985756 -28296733 + L1MA4 LINE L1 1 2223 -4065 10043 194 29 35 chr12 115985900 115988318 -28294171 + L1MA4 LINE L1 2448 4850 -1478 5696 146 37 26 chr12 115989634 115991233 -28291256 + L1MA4 LINE L1 4843 6476 -6 242 286 0 14 chr12 115991707 115991777 -28290712 + MER113 DNA MER1_type? 453 521 0 526 225 40 52 chr12 115991859 115992032 -28290457 - MIR SINE MIR -12 250 80 297 280 30 0 chr12 115993029 115993129 -28289360 - MIR SINE MIR -54 208 106 2258 113 3 3 chr12 115993165 115993476 -28289013 + AluSx SINE Alu 1 311 -1 1111 165 65 50 chr12 115993487 115993747 -28288742 - MER96B DNA MER1_type? -1 416 153 394 179 0 0 chr12 115993780 115993847 -28288642 + MER96B DNA MER1_type? 347 413 -4 222 330 21 0 chr12 115993851 115993945 -28288544 + L2 LINE L2 2678 2773 -541 519 324 28 6 chr12 115994047 115994223 -28288266 + MIR SINE MIR 12 191 -71 184 212 0 0 chr12 115994282 115994315 -28288174 + MIR SINE MIR 217 249 -13 608 247 16 93 chr12 115994321 115994568 -28287921 - MIR SINE MIR -6 256 29 318 375 39 23 chr12 115994599 115994727 -28287762 + L2 LINE L2 3125 3254 -18 298 335 51 51 chr12 115994882 115995291 -28287198 + L2 LINE L2 2344 2752 -562 238 386 0 0 chr12 115995305 115995406 -28287083 + Charlie7 DNA MER1_type 1 101 -2511 1039 251 99 44 chr12 115995469 115995578 -28286911 - LTR16A1 LTR ERVL -3 454 352 1830 137 0 25 chr12 115995578 115995863 -28286626 + AluJb SINE Alu 16 293 -19 1039 251 99 44 chr12 115995863 115996115 -28286374 - LTR16A1 LTR ERVL -105 352 73 333 336 44 44 chr12 115996152 115996381 -28286108 - HAL1b LINE L1 -1091 257 29 483 269 0 28 chr12 115996501 115996642 -28285847 + LTR16A1 LTR ERVL 294 430 -27 221 0 35 0 chr12 115996742 115996771 -28285718 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2049 80 4 8 chr12 115996771 115997033 -28285456 - AluY SINE Alu -33 278 18 244 356 44 0 chr12 115997370 115997460 -28285029 + L2 LINE L2 3218 3311 -2 204 97 0 0 chr12 115997486 115997517 -28284972 + (TTA)n Simple_repeat Simple_repeat 2 32 0 850 225 90 0 chr12 115997532 115997732 -28284757 - MIR SINE MIR -21 241 24 208 281 104 30 chr12 115997904 115998039 -28284450 + MIR3 SINE MIR 1 145 -63 662 300 52 9 chr12 115998393 115998626 -28283863 + MIR SINE MIR 8 250 -12 815 260 20 0 chr12 115998775 115998975 -28283514 - MIR SINE MIR -10 252 49 351 278 97 45 chr12 115999553 115999729 -28282760 + MIR3 SINE MIR 1 185 -23 1222 44 0 27 chr12 116000623 116000806 -28281683 + (TTC)n Simple_repeat Simple_repeat 3 180 0 1319 67 0 6 chr12 116000841 116001021 -28281468 + (TTC)n Simple_repeat Simple_repeat 2 180 0 372 226 36 0 chr12 116001265 116001349 -28281140 - MIR SINE MIR -70 192 106 617 248 7 22 chr12 116001426 116001563 -28280926 - MIR SINE MIR -127 135 1 285 128 0 0 chr12 116001688 116001735 -28280754 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 884 270 186 14 chr12 116001735 116002224 -28280265 - L2 LINE L2 0 3272 2709 625 222 93 0 chr12 116002316 116002478 -28280011 - MIR SINE MIR 0 262 86 289 298 16 83 chr12 116003057 116003178 -28279311 + MIR SINE MIR 3 115 -147 217 254 18 0 chr12 116003306 116003361 -28279128 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 521 242 118 7 chr12 116003362 116003529 -28278960 - MIR SINE MIR -58 204 19 234 273 76 23 chr12 116004052 116004184 -28278305 + MIR SINE MIR 84 222 -40 466 239 8 31 chr12 116004238 116004368 -28278121 + LTR67 LTR ERVL 6 132 -425 545 322 21 29 chr12 116004416 116004446 -28278043 - L1ME3A LINE L1 0 6170 6141 2499 66 0 0 chr12 116004446 116004747 -28277742 + AluY SINE Alu 1 301 -10 545 322 21 29 chr12 116004747 116004955 -28277534 - L1ME3A LINE L1 -29 6141 5934 207 0 0 0 chr12 116004968 116004991 -28277498 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2650 59 3 12 chr12 116004991 116005332 -28277157 - L1PA8A LINE L1 -27 6104 5767 1882 224 77 55 chr12 116005318 116005414 -28277075 - L1ME3A LINE L1 -232 5938 5846 * 2061 145 3 0 chr12 116005414 116005718 -28276771 - AluJb SINE Alu -7 305 1 1882 224 77 55 chr12 116005718 116006157 -28276332 - L1ME3A LINE L1 -324 5846 5418 2337 95 10 0 chr12 116006157 116006463 -28276026 - AluY SINE Alu -2 309 1 1882 224 77 55 chr12 116006463 116007054 -28275435 - L1ME3A LINE L1 -752 5418 4782 268 282 90 75 chr12 116007056 116007311 -28275178 + LTR67 LTR ERVL 184 442 -115 557 288 112 5 chr12 116007895 116008110 -28274379 - MIR SINE MIR -15 247 10 306 321 46 9 chr12 116008178 116008287 -28274202 - MIR SINE MIR -103 159 47 395 250 83 65 chr12 116008420 116008588 -28273901 - MER69A DNA AcHobo -1 176 6 495 276 114 65 chr12 116008798 116009106 -28273383 + MER5C DNA MER1_type 2 324 0 2722 212 90 8 chr12 116009393 116009993 -28272496 - MLT1E1 LTR MaLR 0 654 6 193 319 44 11 chr12 116010006 116010097 -28272392 - MER5A DNA MER1_type -48 141 48 422 287 39 21 chr12 116010106 116010265 -28272224 + MIR SINE MIR 31 190 -59 561 188 121 67 chr12 116010324 116010447 -28272042 + MER5B DNA MER1_type 3 138 -40 1767 151 21 7 chr12 116010447 116010783 -28271706 - AluJo SINE Alu 0 340 1 561 188 121 67 chr12 116010783 116010807 -28271682 + MER5B DNA MER1_type 138 159 -19 517 275 64 76 chr12 116010837 116011217 -28271272 - MLT1H LTR MaLR -25 384 50 181 289 22 0 chr12 116011294 116011339 -28271150 + L2 LINE L2 3251 3296 -17 22 35 0 0 chr12 116011753 116011782 -28270707 + AT_rich Low_complexity Low_complexity 1 29 0 218 349 9 19 chr12 116012469 116012575 -28269914 - MIR3 SINE MIR -53 155 51 834 265 8 17 chr12 116012708 116012946 -28269543 - MIR SINE MIR -6 256 21 431 287 9 0 chr12 116013645 116013760 -28268729 - MER117 DNA MER1_type -50 147 32 279 0 0 0 chr12 116013909 116013940 -28268549 + (TTA)n Simple_repeat Simple_repeat 3 33 0 8039 28 0 0 chr12 116013940 116015213 -28267276 - L1PA4 LINE L1 -18 6137 4865 772 313 9 13 chr12 116015291 116015521 -28266968 + MIR SINE MIR 26 254 -8 388 294 76 8 chr12 116015594 116015748 -28266741 - MIR SINE MIR -62 146 11 2005 171 0 0 chr12 116015800 116016147 -28266342 - AluSx SINE Alu 0 347 1 552 209 56 97 chr12 116016147 116016415 -28266074 + L2 LINE L2 3057 3313 0 265 391 51 17 chr12 116016472 116016707 -28265782 - MIR SINE MIR 0 262 20 476 104 15 0 chr12 116016835 116016902 -28265587 - MLT1C LTR MaLR 0 467 400 805 182 0 8 chr12 116016903 116017035 -28265454 + FLAM_C SINE Alu 2 132 -11 1909 163 123 13 chr12 116017037 116017411 -28265078 - MLT1C LTR MaLR -52 415 1 201 94 0 0 chr12 116017420 116017452 -28265037 + (TA)n Simple_repeat Simple_repeat 1 32 0 4689 215 43 56 chr12 116017511 116018832 -28263657 - L1MB8 LINE L1 -8 6170 4894 3069 158 2 40 chr12 116018832 116019230 -28263259 - MER66B LTR ERV1 0 486 109 1979 143 0 3 chr12 116019230 116019524 -28262965 - AluJb SINE Alu -15 297 5 3069 158 2 40 chr12 116019524 116019630 -28262859 - MER66B LTR ERV1 -377 109 1 4689 215 43 56 chr12 116019630 116020094 -28262395 - L1MB8 LINE L1 -1284 4894 4425 343 286 170 16 chr12 116020311 116020493 -28261996 - MIR SINE MIR -19 243 34 231 221 19 144 chr12 116020808 116020912 -28261577 + MER5A DNA MER1_type 77 167 -22 357 277 62 15 chr12 116020972 116021102 -28261387 + MIR SINE MIR 112 247 -15 331 320 77 22 chr12 116021210 116021391 -28261098 + MIR SINE MIR 22 212 -50 968 218 0 16 chr12 116021572 116021765 -28260724 - MIR SINE MIR -24 238 49 270 0 0 0 chr12 116022405 116022435 -28260054 + (TG)n Simple_repeat Simple_repeat 2 31 0 822 278 20 24 chr12 116023242 116023490 -28258999 + MIR SINE MIR 15 261 -1 1288 176 17 13 chr12 116024019 116024257 -28258232 - AluJo SINE Alu -6 306 68 717 276 42 5 chr12 116024364 116024556 -28257933 + MIR SINE MIR 32 230 -32 191 366 50 0 chr12 116024915 116025016 -28257473 - L2 LINE L2 -502 2812 2707 223 244 0 0 chr12 116025023 116025068 -28257421 + (ATG)n Simple_repeat Simple_repeat 3 47 0 319 219 37 37 chr12 116025074 116025156 -28257333 - MIR SINE MIR -18 244 163 499 328 80 17 chr12 116025688 116025990 -28256499 + L2 LINE L2 2422 2742 -572 225 69 0 0 chr12 116026515 116026544 -28255945 - L2 LINE L2 -19 3294 3266 2107 236 82 21 chr12 116026638 116027197 -28255292 - MLT1E LTR MaLR 0 593 1 268 270 63 16 chr12 116027749 116027812 -28254677 + MER91A DNA MER1_type 1 66 -130 180 0 0 0 chr12 116027887 116027907 -28254582 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 545 264 27 20 chr12 116028481 116028629 -28253860 + MER5A DNA MER1_type 1 149 -40 2051 113 50 0 chr12 116029055 116029337 -28253152 + AluSg SINE Alu 1 296 -14 3098 147 78 4 chr12 116029358 116029861 -28252628 + L1PA16 LINE L1 5625 6164 -2 257 281 56 117 chr12 116030104 116030335 -28252154 - MLT1L LTR MaLR -364 251 35 590 300 47 12 chr12 116030524 116030694 -28251795 + MER5B DNA MER1_type 3 178 0 946 253 60 44 chr12 116030734 116031132 -28251357 - MLT1I LTR MaLR 0 446 3 1900 145 10 0 chr12 116031147 116031436 -28251053 + AluJb SINE Alu 1 292 -20 315 0 0 0 chr12 116031688 116031723 -28250766 + (CA)n Simple_repeat Simple_repeat 2 36 0 187 216 0 0 chr12 116031772 116031809 -28250680 + MER5B DNA MER1_type 125 161 -17 288 130 0 0 chr12 116032163 116032209 -28250280 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 728 261 21 5 chr12 116033013 116033201 -28249288 + MIR SINE MIR 72 262 0 207 0 0 0 chr12 116033462 116033485 -28249004 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 191 314 107 59 chr12 116033685 116033778 -28248711 - L2 LINE L2 -351 2963 2876 2691 145 8 2 chr12 116033778 116034179 -28248310 - MER57A LTR ERV1 0 403 1 191 314 107 59 chr12 116034179 116034356 -28248133 - L2 LINE L2 -438 2876 2680 190 318 122 9 chr12 116034891 116034998 -28247491 - L2 LINE L2 -3 3310 3192 2254 226 28 30 chr12 116035077 116035613 -28246876 - MLT1H LTR MaLR -2 547 13 306 285 114 32 chr12 116036547 116036670 -28245819 - L2 LINE L2 -19 3253 3121 318 372 34 14 chr12 116036964 116037112 -28245377 + L2 LINE L2 2929 3079 -193 4164 186 11 16 chr12 116037272 116038095 -28244394 - L1MA5 LINE L1 -2 6298 5480 2671 136 12 25 chr12 116038221 116038977 -28243512 - L1M2 LINE L1 -680 6641 5891 * 12054 192 22 33 chr12 116038969 116041038 -28241451 - L1M2 LINE L1 -1710 5457 3368 3495 195 20 76 chr12 116041038 116042064 -28240425 - LTR5 LTR ERVK 0 969 1 12054 192 22 33 chr12 116042064 116045473 -28237016 - L1M2 LINE L1 -3799 3368 2 354 246 161 17 chr12 116045501 116045619 -28236870 + L2 LINE L2 3137 3271 -1 322 109 0 0 chr12 116046014 116046060 -28236429 - MADE1 DNA Mariner 0 80 35 1440 269 50 30 chr12 116046060 116046815 -28235674 + L2 LINE L2 2535 3312 -1 284 214 24 36 chr12 116049752 116049793 -28232696 + MIR3 SINE MIR 82 122 -86 2051 120 7 14 chr12 116049793 116050085 -28232404 - AluSg SINE Alu -20 290 1 284 214 24 36 chr12 116050085 116050127 -28232362 + MIR3 SINE MIR 122 164 -44 205 156 0 0 chr12 116050512 116050544 -28231945 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 3714 112 47 0 chr12 116050826 116051355 -28231134 - MER41A LTR ERV1 0 554 1 245 267 33 0 chr12 116051592 116051652 -28230837 - MARNA DNA Mariner -467 119 58 189 237 0 0 chr12 116052157 116052195 -28230294 + MIR SINE MIR 224 261 -1 2094 227 35 118 chr12 116052214 116053019 -28229470 - MER21B LTR ERV1 -125 738 1 1494 129 95 21 chr12 116053759 116053811 -28228678 - AluJo SINE Alu -24 288 241 5195 76 6 0 chr12 116053811 116054467 -28228022 + PABL_A LTR ERV1 1 660 0 1494 129 95 21 chr12 116054467 116054563 -28227926 - AluJo SINE Alu -71 241 154 302 0 26 0 chr12 116054563 116054601 -28227888 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1494 129 95 21 chr12 116054601 116054692 -28227797 - AluJo SINE Alu -158 154 30 229 333 32 16 chr12 116054706 116054829 -28227660 + L2 LINE L2 2934 3058 -214 809 272 171 23 chr12 116055143 116055520 -28226969 - L1ME4a LINE L1 -189 5932 5507 293 274 34 26 chr12 116055737 116055854 -28226635 - L1MEd LINE L1 -5346 773 656 338 250 24 55 chr12 116056140 116056304 -28226185 - L1MEd LINE L1 -5949 170 12 614 309 51 5 chr12 116056600 116056817 -28225672 - MIR SINE MIR -26 236 10 230 239 0 0 chr12 116057002 116057048 -28225441 + CT-rich Low_complexity Low_complexity 2 47 0 749 220 0 12 chr12 116057267 116057435 -28225054 - MER5B DNA MER1_type -6 172 7 963 195 11 0 chr12 116057534 116057708 -28224781 - MER5A DNA MER1_type -12 177 2 257 254 0 0 chr12 116058192 116058247 -28224242 - MIR SINE MIR -116 146 92 454 232 67 37 chr12 116058259 116058423 -28224066 - L2 LINE L2 -17 3296 3128 415 229 21 0 chr12 116058567 116058663 -28223826 - L2 LINE L2 -513 2801 2704 189 167 0 0 chr12 116059328 116059358 -28223131 + MIR SINE MIR 119 148 -114 231 288 0 0 chr12 116060509 116060575 -28221914 + L2 LINE L2 3207 3272 0 595 324 29 12 chr12 116060874 116061118 -28221371 + MIR SINE MIR 2 249 -13 585 296 92 17 chr12 116061446 116061870 -28220619 - LTR16C LTR ERVL -10 481 1 299 343 7 22 chr12 116062593 116062730 -28219759 + MIR SINE MIR 19 153 -55 879 171 0 62 chr12 116062731 116062907 -28219582 + FRAM SINE Alu 1 165 -1 943 134 11 16 chr12 116062974 116063160 -28219329 - Charlie5 DNA MER1_type -10 2602 2418 240 240 70 70 chr12 116063205 116063334 -28219155 + L3b LINE CR1 1327 1455 -128 * 506 271 79 39 chr12 116063328 116063531 -28218958 + MIR SINE MIR 35 245 -17 423 264 88 0 chr12 116063657 116063805 -28218684 - MER117 DNA MER1_type -36 161 1 210 91 0 0 chr12 116063896 116063929 -28218560 + (GA)n Simple_repeat Simple_repeat 2 34 0 513 285 152 44 chr12 116064825 116065365 -28217124 + L2 LINE L2 2714 3312 -1 482 284 102 8 chr12 116065366 116065602 -28216887 - MIR SINE MIR -2 260 3 2017 131 26 47 chr12 116066079 116066462 -28216027 - THE1C LTR MaLR 0 375 1 684 263 67 74 chr12 116067245 116067693 -28214796 - L1ME4a LINE L1 -1 6120 5676 378 0 0 0 chr12 116067710 116067752 -28214737 + (TG)n Simple_repeat Simple_repeat 1 42 0 1627 160 10 58 chr12 116067752 116068045 -28214444 - AluJb SINE Alu -33 279 1 624 283 28 28 chr12 116068209 116068421 -28214068 + MIR SINE MIR 43 254 -8 1176 279 58 13 chr12 116069339 116069733 -28212756 + LTR16C LTR ERVL 77 488 -3 303 348 59 12 chr12 116069737 116070059 -28212430 + L2 LINE L2 2468 2804 -510 261 263 44 148 chr12 116070156 116070224 -28212265 + L2 LINE L2 3018 3091 -181 2141 141 39 34 chr12 116070224 116070608 -28211881 - MLT1B LTR MaLR 0 390 5 261 263 44 148 chr12 116070608 116070809 -28211680 + L2 LINE L2 3091 3259 -13 2140 84 10 55 chr12 116071264 116071572 -28210917 - AluY SINE Alu -17 294 1 674 206 0 0 chr12 116071840 116071966 -28210523 + MER3 DNA MER1_type 5 130 -79 204 67 0 0 chr12 116071966 116071996 -28210493 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 204 246 138 0 chr12 116072046 116072111 -28210378 + MIR3 SINE MIR 95 168 -40 356 286 154 57 chr12 116072116 116072466 -28210023 - MLT1J1 LTR MaLR -8 438 55 1220 278 126 12 chr12 116072605 116073098 -28209391 - MLT1H LTR MaLR 0 549 1 213 136 68 0 chr12 116074324 116074368 -28208121 - MIR SINE MIR -109 153 107 555 305 118 33 chr12 116074850 116075155 -28207334 - LTR16C LTR ERVL 0 491 161 321 228 22 33 chr12 116075975 116076067 -28206422 - MER5A DNA MER1_type -1 188 98 23 0 0 0 chr12 116076286 116076309 -28206180 + AT_rich Low_complexity Low_complexity 1 23 0 453 246 128 17 chr12 116076577 116076756 -28205733 + MIR SINE MIR 21 219 -43 512 293 47 26 chr12 116077215 116077447 -28205042 - MIR SINE MIR -13 249 13 412 236 34 27 chr12 116077767 116077915 -28204574 + MIR SINE MIR 84 232 -30 495 270 6 2 chr12 116078091 116078286 -28204203 + MIR SINE MIR 34 262 0 458 222 79 0 chr12 116078895 116079021 -28203468 + MIR SINE MIR 57 192 -70 1063 224 37 11 chr12 116079038 116079306 -28203183 + MER33 DNA MER1_type 1 275 -49 2171 101 7 0 chr12 116079306 116079613 -28202876 + L1PA12 LINE L1 5818 6126 -42 688 149 72 52 chr12 116079663 116079857 -28202632 + Charlie5 DNA MER1_type 2417 2614 0 677 286 48 16 chr12 116079991 116080243 -28202246 - MIR SINE MIR 0 262 3 1502 130 9 130 chr12 116080877 116081027 -28201462 - AluJo SINE Alu -35 277 183 2216 129 0 0 chr12 116081027 116081337 -28201152 - AluSg SINE Alu 0 310 1 1502 130 9 130 chr12 116081337 116081501 -28200988 - AluJo SINE Alu -129 183 1 237 207 35 0 chr12 116082897 116082955 -28199534 - MIR SINE MIR -102 160 101 609 237 87 34 chr12 116083020 116083227 -28199262 + MER58A DNA MER1_type 6 223 -1 210 231 0 0 chr12 116083321 116083360 -28199129 + polypurine Low_complexity Low_complexity 3 41 0 317 286 41 0 chr12 116083920 116084018 -28198471 + MIR SINE MIR 91 192 -70 446 227 136 0 chr12 116084168 116084278 -28198211 + MLT1J LTR MaLR 40 164 -347 843 223 147 8 chr12 116084621 116084859 -28197630 + MLT1J LTR MaLR 231 501 -10 304 233 43 35 chr12 116084863 116084979 -28197510 + MIR SINE MIR 75 191 -71 253 198 132 33 chr12 116085026 116085117 -28197372 - MER5A DNA MER1_type -48 141 42 259 196 0 18 chr12 116085581 116085637 -28196852 + MIR SINE MIR 81 135 -73 * 594 226 44 0 chr12 116085635 116085794 -28196695 - MIR SINE MIR -29 233 68 180 233 0 0 chr12 116086759 116086802 -28195687 - MIR3 SINE MIR -48 160 118 205 130 0 37 chr12 116087164 116087218 -28195271 + (GA)n Simple_repeat Simple_repeat 1 52 0 811 185 25 0 chr12 116087863 116088147 -28194342 + (TCCA)n Simple_repeat Simple_repeat 1 291 0 547 177 23 17 chr12 116088160 116088335 -28194154 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 563 132 23 16 chr12 116088390 116088519 -28193970 + (TCCA)n Simple_repeat Simple_repeat 4 133 0 2436 93 0 13 chr12 116088532 116088845 -28193644 - AluSc SINE Alu 0 309 1 316 223 10 58 chr12 116088851 116088954 -28193535 - HAL1 LINE L1 0 2507 2410 748 322 115 14 chr12 116088971 116089621 -28192868 - L2 LINE L2 -227 3086 2377 707 301 0 5 chr12 116089633 116089846 -28192643 + MIR SINE MIR 38 249 -13 780 63 31 0 chr12 116089899 116090026 -28192463 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 335 311 55 18 chr12 116090353 116090517 -28191972 - MIR SINE MIR -47 215 46 459 205 47 31 chr12 116090559 116090686 -28191803 + L1ME LINE L1 5648 5776 -345 192 152 0 0 chr12 116090717 116090750 -28191739 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 1660 176 24 7 chr12 116090862 116091151 -28191338 - AluJo SINE Alu -18 294 1 823 161 23 0 chr12 116091151 116091281 -28191208 - AluJo SINE Alu -177 135 3 822 277 121 45 chr12 116092241 116092664 -28189825 + MLT1K LTR MaLR 134 588 0 259 211 21 0 chr12 116092746 116092841 -28189648 + (CAATT)n Simple_repeat Simple_repeat 4 100 0 351 0 0 0 chr12 116093018 116093057 -28189432 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 467 284 135 14 chr12 116093071 116093293 -28189196 + MIR SINE MIR 2 250 -12 226 184 0 0 chr12 116093260 116093298 -28189191 + L2 LINE L2 3222 3259 -13 * 301 295 86 0 chr12 116093835 116093940 -28188549 - MIR SINE MIR -62 146 33 3720 93 5 53 chr12 116094115 116094718 -28187771 - L1P LINE L1 -746 5400 4827 589 256 18 12 chr12 116094831 116094995 -28187494 - Charlie8 DNA MER1_type -2141 276 112 263 328 205 0 chr12 116095924 116096046 -28186443 - MIR SINE MIR -103 159 13 195 232 0 0 chr12 116096109 116096165 -28186324 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 272 282 63 28 chr12 116096176 116096318 -28186171 - MIR SINE MIR -49 213 67 428 307 93 10 chr12 116096820 116097025 -28185464 + MIR SINE MIR 4 225 -37 834 219 63 96 chr12 116097455 116097854 -28184635 + MLT1H1 LTR MaLR 24 406 -149 503 298 140 4 chr12 116098188 116098416 -28184073 + HAL1 LINE L1 2245 2503 -4 1707 162 3 24 chr12 116098440 116098773 -28183716 - AluJo SINE Alu 0 327 1 190 337 82 10 chr12 116098858 116098956 -28183533 + L2 LINE L2 3162 3266 -6 1185 199 131 23 chr12 116099042 116099394 -28183095 + MER113 DNA MER1_type? 37 426 -95 500 219 114 52 chr12 116101594 116101930 -28180559 + MLT1H LTR MaLR 19 407 -142 479 248 34 27 chr12 116102169 116102318 -28180171 + MIR SINE MIR 111 260 -2 309 51 0 0 chr12 116102320 116102359 -28180130 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 657 202 16 71 chr12 116103061 116103244 -28179245 + MER104 DNA Tc2 8 180 0 256 231 46 0 chr12 116104821 116104886 -28177603 - L2 LINE L2 -10 3303 3236 267 79 0 0 chr12 116105039 116105077 -28177412 + (CA)n Simple_repeat Simple_repeat 2 39 0 1296 278 53 64 chr12 116105130 116105222 -28177267 - MLT1K LTR MaLR 0 588 496 360 206 27 0 chr12 116105222 116105295 -28177194 - MER116 DNA Mariner -4 76 2 1296 278 53 64 chr12 116105295 116105749 -28176740 - MLT1K LTR MaLR -92 496 48 239 141 11 130 chr12 116105777 116105869 -28176620 + L1ME4a LINE L1 6022 6102 -19 224 274 46 92 chr12 116106348 116106501 -28175988 + MIR SINE MIR 86 231 -31 439 333 68 13 chr12 116106545 116106782 -28175707 + MIR SINE MIR 13 262 0 545 180 16 0 chr12 116107089 116107211 -28175278 + (TCCA)n Simple_repeat Simple_repeat 1 124 0 349 305 51 8 chr12 116107214 116107332 -28175157 - L2 LINE L2 0 3272 3150 328 353 13 0 chr12 116107852 116108005 -28174484 - MIR SINE MIR -65 197 43 538 282 122 13 chr12 116109214 116109533 -28172956 + L1MC3 LINE L1 5464 5814 -307 1009 284 95 50 chr12 116110636 116110821 -28171668 + L1M4 LINE L1 3617 3792 -2354 2777 119 44 0 chr12 116110821 116111231 -28171258 + MSTA LTR MaLR 1 428 0 1009 284 95 50 chr12 116111231 116111267 -28171222 + L1M4 LINE L1 3792 3825 -2321 2415 69 3 22 chr12 116111267 116111584 -28170905 + AluY SINE Alu 1 311 0 1009 284 95 50 chr12 116111584 116112280 -28170209 + L1M4 LINE L1 3825 4576 -1570 362 80 0 0 chr12 116112292 116112342 -28170147 - L1PA16 LINE L1 -16 6150 6101 267 252 57 31 chr12 116112381 116112540 -28169949 - L1ME4a LINE L1 -152 5969 5807 330 280 40 60 chr12 116112676 116112826 -28169663 + L2 LINE L2 33 179 -3135 251 211 0 35 chr12 116112938 116112995 -28169494 + MER4-int LTR ERV1 1112 1166 -5432 390 224 19 28 chr12 116113033 116113140 -28169349 + L2 LINE L2 3208 3313 0 314 260 10 10 chr12 116113149 116113249 -28169240 - L1ME4a LINE L1 -401 5720 5621 5907 161 33 16 chr12 116113404 116114541 -28167948 + L1MC3 LINE L1 5929 7085 -700 240 271 0 14 chr12 116114541 116114611 -28167878 + MLT1F1 LTR MaLR 24 92 -475 2643 160 58 9 chr12 116114611 116115147 -28167342 + L1MC3 LINE L1 7222 7783 -2 281 318 124 8 chr12 116115411 116115540 -28166949 - MIR SINE MIR -115 147 4 3903 122 25 28 chr12 116116036 116116682 -28165807 - LTR9B LTR ERV1 0 644 1 293 275 17 0 chr12 116116750 116116854 -28165635 + MIR SINE MIR 48 146 -62 319 328 83 0 chr12 116116939 116117107 -28165382 - MIR SINE MIR -52 210 31 315 316 5 21 chr12 116117842 116117958 -28164531 + CT-rich Low_complexity Low_complexity 1 114 0 305 267 76 23 chr12 116118302 116118433 -28164056 - L1ME4a LINE L1 -260 5861 5724 854 150 0 0 chr12 116118689 116118822 -28163667 - FLAM_A SINE Alu 0 133 1 362 322 58 29 chr12 116119762 116119936 -28162553 - MIR SINE MIR -78 184 6 1000 211 47 0 chr12 116120080 116120293 -28162196 + MER58A DNA MER1_type 2 224 0 217 296 12 12 chr12 116120478 116120559 -28161930 - MIR SINE MIR -89 119 39 2074 139 7 7 chr12 116121405 116121715 -28160774 - AluJb SINE Alu -2 310 1 403 245 76 49 chr12 116121742 116121886 -28160603 + MIR SINE MIR 7 153 -66 216 0 0 0 chr12 116121909 116121933 -28160556 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 337 246 0 85 chr12 116122080 116122210 -28160279 - MLT1H LTR MaLR -336 213 95 183 80 0 0 chr12 116123137 116123162 -28159327 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 1016 302 75 9 chr12 116123328 116123765 -28158724 + MLT1L LTR MaLR 142 607 -8 237 344 18 29 chr12 116123776 116123913 -28158576 - MIR SINE MIR -92 116 20 186 326 10 10 chr12 116124200 116124298 -28158191 + MIR SINE MIR 36 133 -75 250 271 23 85 chr12 116124425 116124602 -28157887 + MIR3 SINE MIR 41 206 -2 432 262 91 91 chr12 116125250 116125383 -28157106 + MLT1K LTR MaLR 155 287 -301 4568 168 15 21 chr12 116125383 116125889 -28156600 + MER54B LTR ERVL 1 502 -291 225 0 0 0 chr12 116125889 116125914 -28156575 + (GA)n Simple_repeat Simple_repeat 2 26 0 4568 168 15 21 chr12 116125914 116126205 -28156284 + MER54B LTR ERVL 502 793 0 432 262 91 91 chr12 116126205 116126498 -28155991 + MLT1K LTR MaLR 286 581 -7 320 298 39 0 chr12 116126548 116126652 -28155837 - L2 LINE L2 -10 3262 3155 530 96 24 0 chr12 116126659 116126742 -28155747 - MER3 DNA MER1_type 0 209 125 5377 129 6 30 chr12 116126742 116127621 -28154868 + L1MA9 LINE L1 5293 6150 -162 2569 167 26 14 chr12 116127622 116128106 -28154383 + LTR45B LTR ERV1 3 603 0 1056 92 0 46 chr12 116128106 116128279 -28154210 + L1MA9 LINE L1 6148 6312 0 214 242 10 20 chr12 116128421 116128520 -28153969 + (CATATA)n Simple_repeat Simple_repeat 4 101 0 570 207 66 13 chr12 116128636 116128795 -28153694 - MER3 DNA MER1_type -77 132 5 528 264 155 0 chr12 116128816 116128971 -28153518 + MER5A DNA MER1_type 11 189 0 339 25 0 0 chr12 116129518 116129558 -28152931 + (CA)n Simple_repeat Simple_repeat 2 41 0 358 176 30 99 chr12 116130096 116130227 -28152262 + MER103 DNA DNA 32 153 -13 510 204 0 0 chr12 116130342 116130450 -28152039 + CT-rich Low_complexity Low_complexity 1 108 0 877 201 24 30 chr12 116130450 116130619 -28151870 - FAM SINE Alu -4 171 4 498 298 15 0 chr12 116130624 116130755 -28151734 - MLT1H1 LTR MaLR -382 173 41 443 301 122 10 chr12 116131147 116131343 -28151146 - MIR SINE MIR -27 235 18 582 261 60 33 chr12 116131439 116131664 -28150825 - MIR SINE MIR -13 249 6 696 232 205 44 chr12 116132530 116132823 -28149666 + LTR16C LTR ERVL 152 491 0 189 302 16 0 chr12 116133090 116133153 -28149336 - L2 LINE L2 -15 3257 3194 2104 124 7 3 chr12 116133221 116133511 -28148978 - AluSx SINE Alu -21 291 1 506 259 0 34 chr12 116133511 116133658 -28148831 - MER5B DNA MER1_type -36 142 1 351 60 0 0 chr12 116133993 116134043 -28148446 + (CA)n Simple_repeat Simple_repeat 2 51 0 570 264 74 30 chr12 116134081 116134312 -28148177 - MIR SINE MIR -12 250 10 327 169 0 0 chr12 116134353 116134424 -28148065 + (TGAA)n Simple_repeat Simple_repeat 1 71 0 2179 102 0 0 chr12 116134658 116134933 -28147556 + AluSg SINE Alu 1 275 -35 219 36 0 0 chr12 116134937 116134965 -28147524 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 671 210 42 12 chr12 116135266 116135433 -28147056 + MIR SINE MIR 26 197 -65 1069 161 29 49 chr12 116135438 116135643 -28146846 + MER20 DNA MER1_type 1 201 -18 3320 139 14 18 chr12 116135643 116136213 -28146276 + L1MB3 LINE L1 5614 6181 -2 1694 150 0 85 chr12 116136324 116136665 -28145824 - AluSx SINE Alu 0 312 1 2150 100 3 36 chr12 116136757 116137058 -28145431 + AluSg SINE Alu 1 291 -19 28 29 0 0 chr12 116137168 116137203 -28145286 + AT_rich Low_complexity Low_complexity 1 35 0 1247 206 4 12 chr12 116137218 116137475 -28145014 - L1PA16 LINE L1 0 6166 5912 648 148 19 31 chr12 116137475 116137637 -28144852 - Charlie5 DNA MER1_type -19 2593 2434 273 241 83 41 chr12 116137758 116137903 -28144586 - MER113 DNA MER1_type? -354 167 17 260 200 0 62 chr12 116138107 116138197 -28144292 + (CAGAGA)n Simple_repeat Simple_repeat 1 84 0 253 210 32 16 chr12 116138447 116138509 -28143980 - MER96B DNA MER1_type? -6 169 107 351 288 118 21 chr12 116140595 116140883 -28141606 - L1ME4a LINE L1 -28 6093 5778 1885 173 49 21 chr12 116141549 116141764 -28140725 - MER89 LTR ERV1 0 559 351 2182 142 83 34 chr12 116141764 116142173 -28140316 + MSTB1 LTR MaLR 4 432 0 1885 173 49 21 chr12 116142173 116142401 -28140088 - MER89 LTR ERV1 -208 351 4 254 165 24 63 chr12 116143806 116143933 -28138556 + GA-rich Low_complexity Low_complexity 5 126 0 478 107 18 65 chr12 116143941 116144012 -28138477 + (TAGA)n Simple_repeat Simple_repeat 2 75 -86 2125 134 0 0 chr12 116144012 116144302 -28138187 + AluSx SINE Alu 1 290 -22 478 107 18 65 chr12 116144302 116144398 -28138091 + (TAGA)n Simple_repeat Simple_repeat 75 161 0 368 319 45 10 chr12 116144864 116145131 -28137358 - L1ME4a LINE L1 -652 5510 5255 339 307 26 18 chr12 116145988 116146102 -28136387 - MER5A DNA MER1_type -22 167 53 467 253 281 4 chr12 116146182 116146435 -28136054 - MLT1H LTR MaLR -226 323 1 375 282 8 26 chr12 116146948 116147065 -28135424 - MER5A DNA MER1_type -22 167 53 198 128 0 0 chr12 116147241 116147280 -28135209 + (T)n Simple_repeat Simple_repeat 1 39 0 462 299 54 11 chr12 116147366 116147550 -28134939 + MIR SINE MIR 57 248 -14 1196 284 70 52 chr12 116147954 116148493 -28133996 + MLT1H LTR MaLR 1 549 0 470 309 38 39 chr12 116148550 116148754 -28133735 - MIR SINE MIR -22 240 34 272 262 56 20 chr12 116148786 116148936 -28133553 + L2 LINE L2 2763 3032 -240 1394 84 19 9 chr12 116149238 116149451 -28133038 - L1PB1 LINE L1 -58 6093 5879 343 203 0 0 chr12 116149458 116149517 -28132972 + L1MC4 LINE L1 6644 6702 -1340 345 197 0 42 chr12 116149545 116149616 -28132873 - L1MCa LINE L1 -4363 2063 1996 336 356 0 0 chr12 116149553 116149643 -28132846 + L1MC4 LINE L1 6614 6703 -1339 * 574 135 37 0 chr12 116149644 116149806 -28132683 - L1P5 LINE L1 -360 5791 5505 233 86 0 0 chr12 116149785 116149820 -28132669 + L1PB1 LINE L1 6116 6150 -1 * 991 224 32 6 chr12 116149846 116150095 -28132394 + L1MB1 LINE L1 5927 6165 -3 189 225 0 0 chr12 116150823 116150863 -28131626 - MIR SINE MIR -112 150 111 1659 230 115 13 chr12 116150869 116151416 -28131073 + L1ME2 LINE L1 5549 6151 -13 193 295 167 0 chr12 116151562 116151640 -28130849 - L2 LINE L2 -21 3251 3161 782 212 117 22 chr12 116151938 116152160 -28130329 - MIR SINE MIR -12 250 8 281 312 51 38 chr12 116152239 116152396 -28130093 + MIR SINE MIR 104 262 0 298 342 126 18 chr12 116152418 116152640 -28129849 - MIR SINE MIR -2 260 15 856 223 19 34 chr12 116152643 116152908 -28129581 + MER33 DNA MER1_type 6 266 -58 2398 68 0 10 chr12 116152911 116153206 -28129283 + AluY SINE Alu 1 292 -19 3364 113 18 2 chr12 116153211 116153723 -28128766 + L1PA14 LINE L1 5638 6157 -4 298 215 0 0 chr12 116153880 116153945 -28128544 + MER33 DNA MER1_type 258 322 -2 254 348 15 37 chr12 116154632 116154767 -28127722 + MIR SINE MIR 84 215 -47 458 252 7 59 chr12 116155097 116155232 -28127257 - MIR3 SINE MIR -77 131 4 256 259 0 0 chr12 116155232 116155269 -28127220 - MIR3 SINE MIR -64 144 108 362 321 58 7 chr12 116156103 116156240 -28126249 - MIR SINE MIR -8 254 111 320 246 70 58 chr12 116156856 116157010 -28125479 + MIR SINE MIR 2 155 -63 381 22 0 0 chr12 116157538 116157584 -28124905 + (CA)n Simple_repeat Simple_repeat 2 47 0 221 292 0 0 chr12 116157702 116157767 -28124722 - MIR SINE MIR -3 259 195 1031 226 83 4 chr12 116157793 116158058 -28124431 - MLT1J LTR MaLR -1 510 225 500 48 0 0 chr12 116158062 116158124 -28124365 + AluY SINE Alu 235 296 -15 407 269 58 67 chr12 116158129 116158352 -28124137 - MLT1J LTR MaLR -290 221 1 202 159 0 68 chr12 116158359 116158403 -28124086 - MIR SINE MIR -105 157 117 564 262 139 27 chr12 116158556 116158888 -28123601 - MLT1L LTR MaLR -92 523 155 451 291 8 16 chr12 116159177 116159304 -28123185 + L2 LINE L2 3182 3307 -6 204 339 102 34 chr12 116159580 116159698 -28122791 - MIR SINE MIR -63 145 20 498 263 22 27 chr12 116159859 116160040 -28122449 + MLT1I LTR MaLR 12 223 -241 785 141 16 8 chr12 116160089 116160210 -28122279 + FLAM_C SINE Alu 2 123 -20 339 227 41 21 chr12 116160255 116160352 -28122137 + MLT1I LTR MaLR 275 373 -36 246 292 42 0 chr12 116160391 116160463 -28122026 - MIR SINE MIR -28 234 160 355 250 12 0 chr12 116160493 116160573 -28121916 + L2 LINE L2 3229 3309 -4 182 100 67 0 chr12 116160637 116160667 -28121822 - L2 LINE L2 -31 3282 3251 907 273 89 40 chr12 116160682 116161030 -28121459 - L2 LINE L2 -6 3307 2943 1547 145 123 48 chr12 116161067 116161168 -28121321 + L1MA7 LINE L1 5887 5979 -312 186 43 0 0 chr12 116161168 116161191 -28121298 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 1547 145 123 48 chr12 116161191 116161311 -28121178 + L1MA7 LINE L1 5979 6089 -202 1708 193 7 3 chr12 116161311 116161611 -28120878 - AluJo SINE Alu -11 301 1 1547 145 123 48 chr12 116161611 116161761 -28120728 + L1MA7 LINE L1 6089 6287 -4 268 299 0 0 chr12 116161790 116161857 -28120632 - MIR SINE MIR -187 75 9 1670 191 13 26 chr12 116162132 116162441 -28120048 + AluJo SINE Alu 1 305 -7 396 242 136 0 chr12 116163126 116163258 -28119231 + MIR SINE MIR 34 183 -79 362 257 0 0 chr12 116163470 116163540 -28118949 - L2 LINE L2 -4 3309 3240 548 95 51 0 chr12 116163567 116163704 -28118785 + (TA)n Simple_repeat Simple_repeat 2 145 0 424 280 71 62 chr12 116165153 116165378 -28117111 + MIR SINE MIR 36 262 0 430 271 146 20 chr12 116165748 116165899 -28116590 + MIR SINE MIR 34 203 -59 251 275 51 72 chr12 116165939 116166077 -28116412 - L2 LINE L2 -19 3294 3160 554 259 59 0 chr12 116166288 116166423 -28116066 - MIR SINE MIR -72 190 48 326 252 252 0 chr12 116166534 116166649 -28115840 - L2 LINE L2 -10 3262 3119 729 273 0 48 chr12 116166842 116167073 -28115416 + LTR16B LTR ERVL 232 451 -13 283 238 0 133 chr12 116167264 116167407 -28115082 + MIR SINE MIR 105 228 -34 1151 220 83 23 chr12 116167979 116168329 -28114160 - L1ME3A LINE L1 -6 6164 5794 230 292 15 0 chr12 116168352 116168417 -28114072 + LTR16B LTR ERVL 392 457 -7 318 264 147 0 chr12 116168427 116168556 -28113933 - L1ME3A LINE L1 -377 5793 5646 1139 174 19 39 chr12 116168571 116168778 -28113711 - AluJo SINE Alu -24 288 86 245 303 81 10 chr12 116169096 116169195 -28113294 + MIR3 SINE MIR 85 190 -18 327 270 208 25 chr12 116169231 116169390 -28113099 - MIR SINE MIR -1 261 74 336 111 0 0 chr12 116169653 116169707 -28112782 + (TA)n Simple_repeat Simple_repeat 1 54 0 606 300 12 19 chr12 116169723 116169980 -28112509 - L1ME3A LINE L1 -231 5939 5685 2132 186 3 8 chr12 116170027 116170393 -28112096 + MLT1A1 LTR MaLR 2 365 0 417 269 37 19 chr12 116170440 116170548 -28111941 - L2 LINE L2 -1 3271 3162 698 278 41 37 chr12 116170973 116171218 -28111271 - MIR SINE MIR -1 261 16 337 273 81 25 chr12 116172009 116172135 -28110354 - MIR SINE MIR -41 167 68 371 188 260 45 chr12 116172135 116172289 -28110200 + MER53 DNA DNA 1 187 -2 337 273 81 25 chr12 116172289 116172318 -28110171 - MIR SINE MIR -140 68 42 645 264 18 6 chr12 116172437 116172600 -28109889 - MIR SINE MIR -68 194 30 231 103 0 0 chr12 116172608 116172647 -28109842 + (A)n Simple_repeat Simple_repeat 1 39 0 308 237 85 25 chr12 116172650 116172768 -28109721 - L1ME3A LINE L1 -14 6156 6032 426 216 0 11 chr12 116172840 116172928 -28109561 - MIR SINE MIR -109 153 67 182 241 17 35 chr12 116172911 116172969 -28109520 - MIR SINE MIR -73 135 79 * 236 313 30 20 chr12 116173022 116173121 -28109368 - L2 LINE L2 -20 3293 3194 * 283 333 59 13 chr12 116173103 116173256 -28109233 - MIR SINE MIR -12 250 91 23 54 0 0 chr12 116173565 116173602 -28108887 + GC_rich Low_complexity Low_complexity 1 37 0 414 0 0 0 chr12 116174568 116174614 -28107875 + (TG)n Simple_repeat Simple_repeat 2 47 0 537 267 72 28 chr12 116175266 116175446 -28107043 + MIR3 SINE MIR 20 207 -1 355 306 147 0 chr12 116175489 116175674 -28106815 + MIR SINE MIR 34 244 -18 222 118 0 0 chr12 116176129 116176163 -28106326 + (TG)n Simple_repeat Simple_repeat 1 34 0 207 351 0 0 chr12 116176422 116176499 -28105990 + (TG)n Simple_repeat Simple_repeat 1 77 0 201 287 11 11 chr12 116176544 116176631 -28105858 + (TG)n Simple_repeat Simple_repeat 1 87 0 351 321 0 6 chr12 116177023 116177185 -28105304 + (TG)n Simple_repeat Simple_repeat 2 162 0 299 305 12 12 chr12 116177226 116177390 -28105099 + (TG)n Simple_repeat Simple_repeat 2 165 0 584 297 0 35 chr12 116178319 116178521 -28103968 + MLT1H LTR MaLR 29 223 -326 387 282 69 19 chr12 116178864 116179055 -28103434 - MIR SINE MIR 0 262 2 456 99 0 0 chr12 116179208 116179279 -28103210 + (TCCA)n Simple_repeat Simple_repeat 1 71 0 289 225 65 138 chr12 116179282 116179420 -28103069 - L2 LINE L2 -4 3268 3141 265 307 20 18 chr12 116179426 116179589 -28102900 + MIR SINE MIR 21 248 -14 198 143 0 0 chr12 116179595 116179630 -28102859 + (TCC)n Simple_repeat Simple_repeat 3 37 0 566 248 9 9 chr12 116179705 116179818 -28102671 + MER81 DNA DNA 1 113 -1 1416 167 5 0 chr12 116179862 116180084 -28102405 + MER58A DNA MER1_type 2 224 0 187 301 27 0 chr12 116180261 116180334 -28102155 - MIR SINE MIR -66 142 68 262 276 284 22 chr12 116180368 116180502 -28101987 + MIR3 SINE MIR 35 203 -5 563 308 79 5 chr12 116180618 116180832 -28101657 - MIR SINE MIR -20 242 13 205 232 18 71 chr12 116181966 116182022 -28100467 + L2 LINE L2 3252 3304 -9 691 298 32 11 chr12 116182467 116182655 -28099834 + MIR SINE MIR 16 207 -55 234 200 0 120 chr12 116182900 116182975 -28099514 - L2 LINE L2 0 3272 3207 290 185 174 33 chr12 116183052 116183144 -28099345 + L2 LINE L2 3209 3313 0 966 278 20 4 chr12 116183595 116183850 -28098639 + MIR SINE MIR 4 262 0 404 320 44 2 chr12 116183967 116184168 -28098321 + MIR SINE MIR 10 222 -32 581 283 152 0 chr12 116184220 116184418 -28098071 + MIR SINE MIR 33 260 -2 222 292 0 0 chr12 116184958 116185006 -28097483 - MIR SINE MIR -134 74 27 990 195 20 20 chr12 116185137 116185332 -28097157 - AluJo SINE Alu 0 312 118 762 189 0 0 chr12 116185369 116185491 -28096998 - FLAM_A SINE Alu -10 123 2 1488 193 181 6 chr12 116185495 116185837 -28096652 - MLT1D LTR MaLR -53 452 51 339 214 15 74 chr12 116186553 116186680 -28095809 + MIR SINE MIR 36 156 -66 381 196 105 96 chr12 116186683 116186892 -28095597 - MLT1K LTR MaLR 0 588 378 1827 167 10 10 chr12 116186906 116187206 -28095283 - AluJo SINE Alu -12 300 1 288 355 19 0 chr12 116187611 116187718 -28094771 + MIR SINE MIR 153 261 -1 428 268 35 66 chr12 116187975 116188173 -28094316 - MER102b DNA MER1_type -4 337 146 390 255 83 32 chr12 116188619 116188776 -28093713 + MIR SINE MIR 50 214 -48 531 250 101 24 chr12 116188847 116189055 -28093434 - MIR SINE MIR -19 243 20 313 260 0 0 chr12 116189140 116189217 -28093272 + MIR SINE MIR 55 131 -77 449 304 61 75 chr12 116189219 116189565 -28092924 + L2 LINE L2 2896 3236 -36 1113 282 60 2 chr12 116189615 116190030 -28092459 + L1ME3A LINE L1 5524 5962 -208 245 200 73 80 chr12 116190119 116190269 -28092220 + L1ME3A LINE L1 6006 6154 -16 300 300 252 36 chr12 116191058 116191126 -28091363 - L2 LINE L2 -3 3269 3217 521 209 27 9 chr12 116191126 116191236 -28091253 - MER81 DNA DNA -1 113 2 300 300 252 36 chr12 116191236 116191417 -28091072 - L2 LINE L2 -55 3217 2966 230 380 19 0 chr12 116191651 116191692 -28090797 + L2 LINE L2 2421 2460 -854 1747 170 76 7 chr12 116191692 116191981 -28090508 + AluJo SINE Alu 4 312 0 230 380 19 0 chr12 116191981 116192047 -28090442 + L2 LINE L2 2460 2530 -784 * 477 264 54 54 chr12 116192045 116192175 -28090314 + L2 LINE L2 3075 3207 -106 1017 158 40 79 chr12 116192175 116192403 -28090086 - MER20 DNA MER1_type 0 219 1 477 264 54 54 chr12 116192403 116192511 -28089978 + L2 LINE L2 3206 3313 0 210 297 93 51 chr12 116192684 116192802 -28089687 - MIR SINE MIR -60 148 26 705 248 61 19 chr12 116192826 116193040 -28089449 - MIR SINE MIR 0 262 40 190 107 0 0 chr12 116193626 116193654 -28088835 - MIR SINE MIR -118 144 117 283 192 346 0 chr12 116193819 116193897 -28088592 - L2 LINE L2 -12 3301 3197 615 267 220 0 chr12 116193924 116194115 -28088374 - MIR SINE MIR -23 239 7 851 240 87 25 chr12 116194126 116194368 -28088121 - MIR SINE MIR 0 262 6 1089 149 17 85 chr12 116195263 116195498 -28086991 - MER20 DNA MER1_type 0 219 1 389 275 83 0 chr12 116195627 116195736 -28086753 - MIR3 SINE MIR -54 154 37 425 229 57 79 chr12 116196852 116196911 -28085578 + MIR SINE MIR 86 145 -117 2152 102 3 18 chr12 116196911 116197224 -28085265 + AluSx SINE Alu 1 309 0 425 229 57 79 chr12 116197224 116197303 -28085186 + MIR SINE MIR 145 222 -40 909 279 83 18 chr12 116197616 116198011 -28084478 - LTR33 LTR ERVL -91 430 10 2555 188 47 6 chr12 116198241 116198726 -28083763 - MLT1D LTR MaLR 0 505 1 463 255 186 0 chr12 116199134 116199279 -28083210 + MIR3 SINE MIR 36 207 -1 596 122 41 157 chr12 116199418 116199590 -28082899 - MLT1B LTR MaLR -85 305 154 741 221 6 0 chr12 116200007 116200165 -28082324 - MLT1B LTR MaLR -230 160 2 310 300 122 1 chr12 116200218 116200369 -28082120 - MIR SINE MIR -60 202 36 749 220 5 80 chr12 116200450 116200650 -28081839 + MER5A DNA MER1_type 5 189 0 740 236 40 6 chr12 116201012 116201186 -28081303 + MIR SINE MIR 31 210 -52 1381 114 0 0 chr12 116201192 116201396 -28081093 + AluSg/x SINE Alu 129 332 0 321 250 170 10 chr12 116201493 116201593 -28080896 + L2 LINE L2 3193 3308 -5 254 208 0 0 chr12 116201776 116201824 -28080665 + L2 LINE L2 3225 3272 0 248 318 45 0 chr12 116201880 116201968 -28080521 - MIR SINE MIR -96 166 75 891 202 6 33 chr12 116202048 116202231 -28080258 - MER45A DNA AcHobo 0 178 1 202 273 44 32 chr12 116202231 116202334 -28080155 - MIR SINE MIR -56 152 47 661 179 0 0 chr12 116202909 116203015 -28079474 - FRAM SINE Alu -9 167 62 393 316 23 15 chr12 116203238 116203371 -28079118 - MIR SINE MIR -108 154 21 2727 100 112 9 chr12 116203743 116204163 -28078326 - MER4C LTR ERV1 -2 463 1 506 239 26 0 chr12 116204346 116204459 -28078030 + MER20 DNA MER1_type 104 219 0 185 333 83 0 chr12 116204534 116204594 -28077895 + MIR SINE MIR 38 102 -106 554 295 75 4 chr12 116205064 116205305 -28077184 + MIR SINE MIR 1 258 -4 235 255 10 78 chr12 116205368 116205470 -28077019 + MIR3 SINE MIR 93 187 -21 539 296 20 20 chr12 116205839 116206035 -28076454 + MIR3 SINE MIR 11 206 -2 206 260 42 73 chr12 116206046 116206142 -28076347 - MIR SINE MIR -2 260 168 * 253 270 0 108 chr12 116206105 116206216 -28076273 + MIR3 SINE MIR 93 191 -17 398 154 0 0 chr12 116206348 116206413 -28076076 - MER58 DNA MER1_type -1 2419 2355 438 307 30 12 chr12 116206668 116206834 -28075655 + L2 LINE L2 2921 3089 -224 295 301 142 0 chr12 116206839 116206952 -28075537 + MER112 DNA MER1_type 5 133 -127 3131 121 82 2 chr12 116207495 116208007 -28074482 - L1MC1 LINE L1 0 6333 5781 461 100 0 0 chr12 116208009 116208079 -28074410 - L1MC1 LINE L1 -674 5659 5590 955 200 100 21 chr12 116208747 116208987 -28073502 + MIR SINE MIR 4 262 0 448 280 68 8 chr12 116208993 116209125 -28073364 - MIR SINE MIR -45 217 78 23 0 0 0 chr12 116209305 116209328 -28073161 + AT_rich Low_complexity Low_complexity 1 23 0 397 223 129 22 chr12 116210144 116210283 -28072206 + MIR SINE MIR 29 182 -80 377 257 26 44 chr12 116210303 116210416 -28072073 + L1ME LINE L1 5669 5779 -342 906 286 89 7 chr12 116210539 116210819 -28071670 - LTR16C LTR ERVL -96 395 93 357 283 40 101 chr12 116210867 116211143 -28071346 + L1ME LINE L1 5451 5709 -453 427 293 17 0 chr12 116211326 116211442 -28071047 - MIR SINE MIR -56 206 89 194 238 155 12 chr12 116211425 116211509 -28070980 + MIR SINE MIR 153 248 -14 * 262 177 114 51 chr12 116212083 116212162 -28070327 - MIR3 SINE MIR -18 190 107 308 329 28 28 chr12 116212205 116212348 -28070141 - MIR SINE MIR -62 200 58 237 336 21 64 chr12 116212452 116212592 -28069897 + MIR SINE MIR 129 262 0 265 220 11 22 chr12 116212625 116212716 -28069773 + GA-rich Low_complexity Low_complexity 1 90 0 436 240 84 84 chr12 116213495 116213720 -28068769 - MIR SINE MIR -18 244 20 201 290 36 115 chr12 116213911 116214163 -28068326 + L2 LINE L2 2867 3098 -174 642 258 100 17 chr12 116214297 116214537 -28067952 + MIR SINE MIR 2 261 -1 348 302 155 0 chr12 116214599 116214728 -28067761 + L2 LINE L2 3123 3271 -1 306 233 7 20 chr12 116214731 116214877 -28067612 + (TGGA)n Simple_repeat Simple_repeat 4 147 0 660 168 5 32 chr12 116214901 116215086 -28067403 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 377 243 58 10 chr12 116215098 116215201 -28067288 + L2 LINE L2 3203 3310 -3 232 310 133 38 chr12 116215445 116215603 -28066886 - MER5A DNA MER1_type -2 187 15 615 244 103 72 chr12 116215711 116215942 -28066547 + MIR SINE MIR 2 253 -9 608 225 7 56 chr12 116216024 116216166 -28066323 + L2 LINE L2 3179 3313 0 555 204 9 9 chr12 116217651 116217759 -28064730 - MIR SINE MIR -105 157 50 680 233 163 5 chr12 116217834 116218036 -28064453 - MIR SINE MIR -3 259 26 483 310 6 53 chr12 116218142 116218313 -28064176 - MIR SINE MIR -62 200 38 387 351 30 0 chr12 116218740 116218874 -28063615 + MIR3 SINE MIR 37 174 -34 1338 288 42 29 chr12 116219113 116219593 -28062896 + L2 LINE L2 2828 3313 0 295 357 128 20 chr12 116219622 116219818 -28062671 + L2 LINE L2 2949 3165 -107 228 290 0 0 chr12 116219890 116219959 -28062530 - MIR SINE MIR 0 262 194 190 271 0 71 chr12 116219960 116220045 -28062444 + MIR SINE MIR 184 262 0 555 314 109 13 chr12 116220051 116220290 -28062199 - MIR SINE MIR 0 262 1 526 216 105 41 chr12 116220764 116220935 -28061554 + MIR SINE MIR 19 200 -62 777 291 18 9 chr12 116220939 116221166 -28061323 - MIR SINE MIR -22 240 12 436 256 60 23 chr12 116221249 116221382 -28061107 - MIR SINE MIR -102 160 23 531 264 25 19 chr12 116221582 116221741 -28060748 - MIR SINE MIR -102 160 1 294 73 0 0 chr12 116221771 116221812 -28060677 + (TTCA)n Simple_repeat Simple_repeat 2 42 0 247 333 0 0 chr12 116221814 116221883 -28060606 - L2 LINE L2 -18 3295 3227 190 342 26 35 chr12 116222032 116222146 -28060343 - L2 LINE L2 -179 3093 2981 2002 211 20 9 chr12 116222378 116222818 -28059671 - MLT1C LTR MaLR 0 467 23 241 288 186 8 chr12 116222857 116222975 -28059514 - MIR SINE MIR -87 175 37 204 179 77 0 chr12 116223712 116223751 -28058738 - L2 LINE L2 0 3272 3231 2329 116 6 0 chr12 116223829 116224175 -28058314 + L1PA13 LINE L1 5814 6161 -2 284 289 89 28 chr12 116224469 116224649 -28057840 - MLT1K LTR MaLR -20 568 378 182 294 82 35 chr12 116225199 116225284 -28057205 - L2 LINE L2 -531 2783 2695 263 256 182 50 chr12 116225385 116225506 -28056983 + MIR SINE MIR 120 256 -6 201 129 0 0 chr12 116225513 116225544 -28056945 + (TCTCTG)n Simple_repeat Simple_repeat 5 35 0 313 269 0 48 chr12 116225616 116225720 -28056769 + CT-rich Low_complexity Low_complexity 3 101 0 327 330 27 9 chr12 116226320 116226432 -28056057 + MIR SINE MIR 34 147 -61 700 241 94 14 chr12 116226494 116226706 -28055783 + MIR SINE MIR 8 236 -26 180 353 118 32 chr12 116226974 116227161 -28055328 - MIR SINE MIR -14 248 46 2211 98 0 64 chr12 116228665 116228993 -28053496 - AluSc SINE Alu -2 307 1 311 299 33 79 chr12 116229152 116229366 -28053123 - L2 LINE L2 -57 3215 3012 354 301 49 28 chr12 116229381 116229524 -28052965 - L2 LINE L2 0 3272 3127 653 219 24 37 chr12 116229541 116229705 -28052784 - MIR SINE MIR 0 262 101 259 371 32 28 chr12 116229835 116230088 -28052401 - L2 LINE L2 -338 2976 2723 451 246 86 70 chr12 116230093 116230280 -28052209 - L2 LINE L2 -3 3310 3121 528 208 214 46 chr12 116231989 116232162 -28050327 - MIR SINE MIR -43 219 18 313 283 33 33 chr12 116232336 116232456 -28050033 - MIR SINE MIR -2 260 141 496 220 220 13 chr12 116232622 116232772 -28049717 - MER5A DNA MER1_type 0 189 9 303 28 0 0 chr12 116232937 116232973 -28049516 + (TA)n Simple_repeat Simple_repeat 2 37 0 2007 128 0 37 chr12 116232973 116233269 -28049220 - AluSg SINE Alu -25 285 1 393 220 14 7 chr12 116233779 116233920 -28048569 + CT-rich Low_complexity Low_complexity 2 143 0 282 73 0 0 chr12 116233920 116233961 -28048528 + (CA)n Simple_repeat Simple_repeat 1 41 0 298 262 139 16 chr12 116234391 116234513 -28047976 - L2 LINE L2 -3 3269 3133 188 320 13 0 chr12 116235036 116235111 -28047378 - MIR SINE MIR -105 103 28 474 355 42 23 chr12 116236552 116236766 -28045723 + MIR SINE MIR 18 235 -27 712 286 43 17 chr12 116237427 116237658 -28044831 + MIR SINE MIR 2 238 -24 231 203 76 63 chr12 116237734 116237813 -28044676 - MER91C DNA MER1_type -26 114 35 868 287 81 12 chr12 116237851 116238172 -28044317 - LTR16C LTR ERVL 0 491 149 538 233 104 15 chr12 116238337 116238537 -28043952 - MIR SINE MIR -18 244 20 267 273 23 0 chr12 116239452 116239540 -28042949 - MIR SINE MIR -108 154 65 234 191 0 0 chr12 116239570 116239612 -28042877 - MIR SINE MIR -62 146 105 192 135 0 0 chr12 116240882 116240919 -28041570 + (CA)n Simple_repeat Simple_repeat 1 37 0 751 262 59 9 chr12 116241416 116241637 -28040852 + MIR SINE MIR 23 254 -8 387 344 44 11 chr12 116241644 116241827 -28040662 + MIR SINE MIR 73 261 -1 1652 191 0 27 chr12 116241846 116242144 -28040345 - AluJo SINE Alu -22 290 1 578 299 66 33 chr12 116242175 116242416 -28040073 + MIR SINE MIR 1 249 -13 1820 137 0 11 chr12 116242583 116242846 -28039643 + AluSx SINE Alu 5 264 -48 200 211 0 77 chr12 116243093 116243145 -28039344 - MIR3 SINE MIR -51 157 110 396 270 37 17 chr12 116243655 116243800 -28038689 + MIR SINE MIR 103 250 -12 503 161 0 11 chr12 116243971 116244058 -28038431 - FLAM SINE Alu -15 128 43 467 251 100 92 chr12 116244062 116244163 -28038326 - L1ME4a LINE L1 0 6121 6022 2254 158 2 60 chr12 116244163 116244581 -28037908 - MLT2C1 LTR ERVL -3 394 1 467 251 100 92 chr12 116244581 116244922 -28037567 - L1ME4a LINE L1 -99 6022 5672 1095 189 144 101 chr12 116244922 116245360 -28037129 + LTR16A1 LTR ERVL 1 457 0 467 251 100 92 chr12 116245360 116245395 -28037094 - L1ME4a LINE L1 -449 5672 5639 272 267 70 0 chr12 116245889 116245975 -28036514 + MIR SINE MIR 41 132 -76 188 294 147 15 chr12 116246203 116246339 -28036150 + L3 LINE CR1 1163 1316 -261 2458 130 0 22 chr12 116246414 116246782 -28035707 - THE1B LTR MaLR -2 362 3 201 360 126 0 chr12 116246847 116246958 -28035531 + L3 LINE CR1 1416 1540 -37 325 221 63 87 chr12 116246978 116247105 -28035384 + L2 LINE L2 3165 3288 -25 288 212 165 0 chr12 116247234 116247319 -28035170 + MER113 DNA MER1_type? 326 424 -97 704 233 96 47 chr12 116247795 116248139 -28034350 - MER113 DNA MER1_type? -154 367 7 594 250 62 23 chr12 116248689 116248865 -28033624 + MIR3 SINE MIR 21 203 -5 911 148 0 16 chr12 116248989 116249172 -28033317 + (ATG)n Simple_repeat Simple_repeat 1 180 0 457 319 6 44 chr12 116249214 116249396 -28033093 - MIR SINE MIR -14 248 74 495 309 97 5 chr12 116249523 116249740 -28032749 - MIR SINE MIR -3 259 23 613 261 108 28 chr12 116249840 116250016 -28032473 + MER91A DNA MER1_type 5 194 -2 239 205 0 0 chr12 116250469 116250508 -28031981 - MIR SINE MIR -7 255 217 946 261 26 0 chr12 116250522 116250752 -28031737 - MIR SINE MIR -11 251 16 469 262 94 7 chr12 116250785 116250934 -28031555 - MIR SINE MIR -69 193 32 345 314 5 81 chr12 116251153 116251338 -28031151 - L1MC4 LINE L1 -11 8031 7861 243 216 172 17 chr12 116251386 116251502 -28030987 - L1ME2 LINE L1 -11 6153 6020 381 312 19 38 chr12 116251729 116251886 -28030603 - MIR SINE MIR -62 200 47 235 295 128 42 chr12 116252051 116252363 -28030126 - L2 LINE L2 -1370 1944 1606 266 62 98 0 chr12 116252785 116252831 -28029658 - MIR SINE MIR -55 153 100 291 279 0 0 chr12 116252862 116252930 -28029559 - MIR SINE MIR -51 211 144 320 64 21 0 chr12 116253172 116253219 -28029270 + (GGAA)n Simple_repeat Simple_repeat 4 51 0 214 303 121 18 chr12 116253293 116253458 -28029031 - L2 LINE L2 -357 2957 2776 252 87 98 0 chr12 116253488 116253534 -28028955 + MIR SINE MIR 100 153 -55 627 258 22 94 chr12 116253720 116253995 -28028494 - MIR SINE MIR -5 257 3 196 240 230 10 chr12 116254567 116254667 -28027822 - MIR SINE MIR -11 251 130 476 224 60 9 chr12 116254814 116254930 -28027559 - MIR SINE MIR -62 200 79 438 179 47 38 chr12 116255201 116255307 -28027182 + MIR SINE MIR 70 176 -86 1332 91 0 0 chr12 116255313 116255500 -28026989 + MER30 DNA MER1_type 1 187 -43 21 0 0 0 chr12 116255743 116255764 -28026725 + AT_rich Low_complexity Low_complexity 1 21 0 255 145 48 65 chr12 116255843 116255905 -28026584 - MIR SINE MIR -199 63 3 254 288 27 99 chr12 116256051 116256104 -28026385 - MIR3 SINE MIR -3 205 163 321 304 82 33 chr12 116256104 116256288 -28026201 + MER117 DNA MER1_type 1 193 -4 254 288 27 99 chr12 116256288 116256345 -28026144 - MIR3 SINE MIR -45 163 103 * 423 291 40 42 chr12 116256340 116256513 -28025976 + MIR3 SINE MIR 36 205 -28 624 266 25 6 chr12 116256609 116256767 -28025722 + MER5B DNA MER1_type 14 174 -4 275 331 33 16 chr12 116257451 116257572 -28024917 + MIR3 SINE MIR 67 189 -19 267 79 0 0 chr12 116257839 116257877 -28024612 + (TC)n Simple_repeat Simple_repeat 2 39 0 351 351 0 14 chr12 116257924 116258159 -28024330 + CT-rich Low_complexity Low_complexity 1 231 0 359 263 51 36 chr12 116259882 116260019 -28022470 - MIR SINE MIR -71 191 53 694 220 145 5 chr12 116260101 116260287 -28022202 + MIR SINE MIR 16 227 -35 339 329 105 19 chr12 116260421 116260631 -28021858 + L2 LINE L2 2826 3053 -219 309 259 97 54 chr12 116260740 116260925 -28021564 - MLT1H LTR MaLR -259 290 98 2041 124 3 32 chr12 116260983 116261298 -28021191 - AluJo SINE Alu -6 306 1 367 174 0 14 chr12 116261452 116261521 -28020968 + L2 LINE L2 3245 3312 -1 231 36 0 0 chr12 116261831 116261859 -28020630 + (GGGGA)n Simple_repeat Simple_repeat 2 29 0 397 294 103 7 chr12 116262057 116262193 -28020296 + MIR SINE MIR 4 152 -110 316 190 0 0 chr12 116262422 116262484 -28020005 - MIR SINE MIR -86 122 61 210 265 5 0 chr12 116262489 116262548 -28019941 + MIR SINE MIR 25 84 -124 532 236 7 61 chr12 116262769 116262823 -28019666 - MIR SINE MIR -117 145 90 1658 169 12 35 chr12 116262823 116263167 -28019322 + L1MA10 LINE L1 5989 6324 -10 532 236 7 61 chr12 116263167 116263260 -28019229 - MIR SINE MIR -172 90 6 212 211 0 39 chr12 116263296 116263348 -28019141 + L2 LINE L2 3212 3261 -11 187 167 0 0 chr12 116263739 116263769 -28018720 - MIR3 SINE MIR -19 189 160 266 315 126 0 chr12 116263776 116263887 -28018602 + MER5B DNA MER1_type 1 125 -53 1268 77 55 0 chr12 116263888 116264069 -28018420 - L1PA11 LINE L1 -4 6170 5980 247 316 0 0 chr12 116264315 116264394 -28018095 + MER102a DNA MER1_type 252 330 0 657 151 105 134 chr12 116264403 116264508 -28017981 + MER5A DNA MER1_type 23 124 -65 2233 87 11 0 chr12 116264508 116264811 -28017678 - AluY SINE Alu 0 306 1 657 151 105 134 chr12 116264811 116264876 -28017613 + MER5A DNA MER1_type 124 189 0 555 250 128 11 chr12 116264887 116265051 -28017438 + MER5A DNA MER1_type 4 189 0 709 325 17 4 chr12 116265759 116265990 -28016499 - MIR SINE MIR 0 262 29 34 24 0 0 chr12 116266116 116266157 -28016332 + AT_rich Low_complexity Low_complexity 1 41 0 1331 103 70 1 chr12 116266197 116266444 -28016045 - L1P5 LINE L1 -322 5833 5568 395 332 47 36 chr12 116266466 116266659 -28015830 + MIR SINE MIR 49 243 -19 225 222 48 16 chr12 116267286 116267349 -28015140 - L2 LINE L2 -4 3268 3204 469 268 83 13 chr12 116267376 116267533 -28014956 + MIR SINE MIR 30 197 -65 188 274 48 113 chr12 116268232 116268356 -28014133 - MIR SINE MIR 0 262 147 1123 176 21 5 chr12 116268357 116268550 -28013939 + MIR SINE MIR 1 196 -66 39 88 0 0 chr12 116268554 116268656 -28013833 + AT_rich Low_complexity Low_complexity 1 102 0 2029 148 0 3 chr12 116268829 116269134 -28013355 - AluJo SINE Alu -8 304 1 258 32 0 0 chr12 116271449 116271480 -28011009 + (TG)n Simple_repeat Simple_repeat 1 31 0 284 136 0 15 chr12 116271480 116271546 -28010943 + (GA)n Simple_repeat Simple_repeat 2 66 0 258 132 0 0 chr12 116272055 116272108 -28010381 + (GA)n Simple_repeat Simple_repeat 2 54 0 198 0 0 0 chr12 116273404 116273426 -28009063 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 333 280 28 19 chr12 116273427 116273534 -28008955 - L2 LINE L2 -14 3299 3192 220 216 69 95 chr12 116273619 116273735 -28008754 - MIR SINE MIR -79 183 71 190 239 28 0 chr12 116274770 116274841 -28007648 + CT-rich Low_complexity Low_complexity 6 78 0 211 300 0 50 chr12 116274867 116274967 -28007522 + CT-rich Low_complexity Low_complexity 6 100 0 285 29 0 0 chr12 116275105 116275139 -28007350 + (GA)n Simple_repeat Simple_repeat 2 35 0 206 229 21 0 chr12 116275217 116275265 -28007224 + L2 LINE L2 3248 3296 -17 215 320 59 0 chr12 116275269 116275422 -28007067 - L2 LINE L2 -733 2581 2420 257 284 40 0 chr12 116275610 116275684 -28006805 - MIR SINE MIR -84 124 48 331 165 24 0 chr12 116275738 116275823 -28006666 + GA-rich Low_complexity Low_complexity 2 88 0 263 328 35 52 chr12 116276657 116276773 -28005716 + MER5B DNA MER1_type 31 144 -34 258 282 14 0 chr12 116276973 116277044 -28005445 + L2 LINE L2 3201 3272 0 714 209 63 0 chr12 116277198 116277356 -28005133 - MER63A DNA MER1_type 0 210 43 335 156 33 11 chr12 116277358 116277448 -28005041 + CT-rich Low_complexity Low_complexity 2 93 0 1020 222 43 13 chr12 116277985 116278219 -28004270 + MIR SINE MIR 12 252 -10 318 314 41 8 chr12 116278626 116278747 -28003742 + MIR SINE MIR 20 144 -118 195 268 0 0 chr12 116278775 116278816 -28003673 + MIR SINE MIR 221 261 -1 1869 180 36 15 chr12 116279579 116279968 -28002521 - L1MC2 LINE L1 -11 6333 5937 293 228 228 0 chr12 116279992 116280106 -28002383 + Charlie8 DNA MER1_type 79 218 -2199 375 289 8 56 chr12 116280925 116281073 -28001416 + MIR SINE MIR 29 169 -59 329 229 152 29 chr12 116281212 116281317 -28001172 - L2 LINE L2 -1 3312 3195 182 286 79 0 chr12 116281343 116281406 -28001083 + L2 LINE L2 2559 2626 -688 207 350 125 6 chr12 116281486 116281646 -28000843 + L2 LINE L2 2861 3039 -233 504 283 37 42 chr12 116281704 116281895 -28000594 - MIR SINE MIR -2 260 71 411 256 86 8 chr12 116281907 116282024 -28000465 + L2 LINE L2 3147 3272 0 221 270 30 30 chr12 116282710 116282739 -27999750 + (ATATG)n Simple_repeat Simple_repeat 1 29 -71 2571 120 80 12 chr12 116282739 116283140 -27999349 - MSTA LTR MaLR 0 428 1 221 270 30 30 chr12 116283140 116283210 -27999279 + (ATATG)n Simple_repeat Simple_repeat 28 100 0 660 281 11 6 chr12 116283246 116283424 -27999065 + MIR SINE MIR 13 191 -71 456 320 26 41 chr12 116283452 116283646 -27998843 + MIR SINE MIR 14 204 -58 2554 158 9 18 chr12 116283651 116284107 -27998382 + MLT1C LTR MaLR 1 452 -15 214 265 0 0 chr12 116284108 116284157 -27998332 + L2 LINE L2 3213 3261 -11 290 254 15 15 chr12 116284250 116284317 -27998172 + MIR SINE MIR 81 147 -61 405 248 97 28 chr12 116284370 116284557 -27997932 - MIR SINE MIR -54 208 14 426 343 40 11 chr12 116285324 116285499 -27996990 - MIR SINE MIR -16 246 67 1755 86 0 34 chr12 116285595 116285829 -27996660 + AluY SINE Alu 86 311 0 2269 166 73 25 chr12 116285853 116286335 -27996154 + MLT1D LTR MaLR 1 505 0 216 0 0 0 chr12 116286561 116286585 -27995904 + (T)n Simple_repeat Simple_repeat 1 24 0 1334 253 160 24 chr12 116286618 116287113 -27995376 - L1ME3 LINE L1 -12 6150 5589 2997 149 29 27 chr12 116287361 116287826 -27994663 - LTR45 LTR ERV1 0 525 57 758 197 8 0 chr12 116287826 116287953 -27994536 - FLAM_C SINE Alu -5 128 1 2997 149 29 27 chr12 116287953 116288011 -27994478 - LTR45 LTR ERV1 -468 57 1 1160 250 160 2 chr12 116288095 116288539 -27993950 + MER113 DNA MER1_type? 8 521 0 450 257 99 26 chr12 116288563 116288715 -27993774 + MIR SINE MIR 35 197 -65 302 258 63 88 chr12 116289073 116289117 -27993372 + MIR SINE MIR 38 82 -180 877 81 15 7 chr12 116289117 116289253 -27993236 + (TTTC)n Simple_repeat Simple_repeat 3 139 0 2104 119 0 0 chr12 116289253 116289531 -27992958 - AluSx SINE Alu -32 280 3 302 258 63 88 chr12 116289531 116289644 -27992845 + MIR SINE MIR 80 192 -70 538 288 148 35 chr12 116289915 116290321 -27992168 - MLT1K LTR MaLR -31 557 106 341 313 52 0 chr12 116290683 116290798 -27991691 + MIR3 SINE MIR 15 135 -73 811 233 24 29 chr12 116290919 116291125 -27991364 + MIR SINE MIR 37 241 -21 333 311 84 0 chr12 116291182 116291301 -27991188 + L2 LINE L2 3141 3269 -3 3127 106 6 37 chr12 116291339 116291828 -27990661 + MER1A DNA MER1_type 56 529 0 341 266 7 0 chr12 116292746 116292889 -27989600 + (ATG)n Simple_repeat Simple_repeat 3 146 0 238 247 21 62 chr12 116292899 116292996 -27989493 - MIR SINE MIR -29 233 141 382 247 0 0 chr12 116293000 116293081 -27989408 + MIR SINE MIR 77 157 -105 234 270 168 19 chr12 116293137 116293289 -27989200 - MIR SINE MIR -50 212 30 1231 219 52 1 chr12 116293778 116294086 -27988403 + MER33 DNA MER1_type 1 312 -12 531 321 0 0 chr12 116294126 116294260 -27988229 + MIR SINE MIR 16 149 -113 526 221 153 0 chr12 116294567 116294698 -27987791 - MIR SINE MIR -109 153 3 368 225 45 0 chr12 116294723 116294812 -27987677 - MIR SINE MIR -102 160 68 1903 217 54 11 chr12 116294829 116295272 -27987217 + MLT1C LTR MaLR 6 467 0 953 141 203 76 chr12 116295277 116295568 -27986921 + MLT1A1 LTR MaLR 1 328 -37 405 0 0 0 chr12 116296232 116296277 -27986212 + (TG)n Simple_repeat Simple_repeat 2 46 0 573 289 82 5 chr12 116296419 116296613 -27985876 - MIR SINE MIR -34 228 20 432 277 215 31 chr12 116296718 116296913 -27985576 + MIR SINE MIR 5 235 -27 1729 165 3 38 chr12 116297029 116297344 -27985145 - AluJo SINE Alu -8 304 1 263 281 12 12 chr12 116297366 116297448 -27985041 - L2 LINE L2 -37 3235 3154 838 195 76 43 chr12 116297508 116297718 -27984771 + MER20 DNA MER1_type 3 219 0 2415 60 0 0 chr12 116298250 116298560 -27983929 - AluY SINE Alu 0 310 1 2625 175 97 26 chr12 116298582 116299234 -27983255 - L1ME1 LINE L1 -2 6164 5467 447 299 115 11 chr12 116299458 116299632 -27982857 + MIR SINE MIR 13 204 -58 26 64 0 0 chr12 116299638 116299685 -27982804 + AT_rich Low_complexity Low_complexity 1 47 0 197 297 40 0 chr12 116299689 116299763 -27982726 + MIR SINE MIR 166 242 -20 810 202 22 28 chr12 116299837 116300015 -27982474 + MIR SINE MIR 34 210 -52 832 152 8 15 chr12 116300061 116300193 -27982296 + FLAM_C SINE Alu 2 132 -1 652 250 12 0 chr12 116300194 116300358 -27982131 + L1ME3 LINE L1 5930 6095 -67 910 283 62 4 chr12 116300811 116301051 -27981438 - MIR SINE MIR -1 261 8 1068 227 0 14 chr12 116301790 116302010 -27980479 + MER20 DNA MER1_type 3 219 0 324 313 0 27 chr12 116302079 116302191 -27980298 + MIR SINE MIR 71 179 -83 211 244 0 0 chr12 116302235 116302280 -27980209 + (TTA)n Simple_repeat Simple_repeat 3 47 0 446 341 114 7 chr12 116302675 116302948 -27979541 - LTR16C LTR ERVL 0 491 190 436 302 47 16 chr12 116303244 116303373 -27979116 + MIR SINE MIR 106 238 -24 395 243 69 28 chr12 116303822 116303966 -27978523 - Charlie8 DNA MER1_type -1928 489 340 296 333 12 12 chr12 116304063 116304234 -27978255 + L1M4 LINE L1 2 172 -6370 1365 269 30 21 chr12 116304237 116304702 -27977787 + L1M4 LINE L1 832 1300 -5242 379 329 9 5 chr12 116305211 116305424 -27977065 + L1M4 LINE L1 1896 2109 -4537 203 255 21 0 chr12 116305954 116306001 -27976488 + MER91 DNA MER1_type 1 48 -92 201 306 89 32 chr12 116306078 116306202 -27976287 - MIR3 SINE MIR -1 207 77 563 240 211 6 chr12 116306252 116306423 -27976066 - MIR SINE MIR -37 225 20 681 223 115 42 chr12 116306558 116306845 -27975644 - MLT1G1 LTR MaLR -285 310 3 312 243 24 3 chr12 116307017 116307194 -27975295 + LTR33 LTR ERVL 4 227 -294 260 91 23 0 chr12 116307466 116307510 -27974979 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 204 122 41 20 chr12 116307893 116307942 -27974547 - MIR SINE MIR -76 132 83 429 312 8 16 chr12 116308424 116308549 -27973940 + MIR SINE MIR 21 144 -118 3579 216 38 33 chr12 116308642 116309310 -27973179 - L1ME1 LINE L1 -5 6161 5498 203 0 37 0 chr12 116309310 116309337 -27973152 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1598 164 44 36 chr12 116309340 116309615 -27972874 - AluJo SINE Alu -35 277 1 3579 216 38 33 chr12 116309615 116310018 -27972471 - L1ME1 LINE L1 -669 5497 5077 237 301 118 26 chr12 116310665 116310818 -27971671 - MIR SINE MIR -15 247 81 253 246 14 0 chr12 116310878 116310947 -27971542 - MIR SINE MIR -6 256 187 229 219 24 134 chr12 116310947 116311029 -27971460 - MLT1J LTR MaLR 0 549 477 424 268 109 25 chr12 116311130 116311398 -27971091 - MLT1H LTR MaLR -144 265 3 393 262 195 0 chr12 116311401 116311550 -27970939 - MIR SINE MIR -72 190 13 238 265 136 56 chr12 116312813 116312975 -27969514 + MLT1H LTR MaLR 375 549 0 287 290 142 13 chr12 116313147 116313302 -27969187 - MLT1L LTR MaLR -2 613 439 215 229 0 0 chr12 116313304 116313352 -27969137 + T-rich Low_complexity Low_complexity 3 50 0 319 234 25 125 chr12 116313358 116313663 -27968826 - MLT1J LTR MaLR -174 441 111 944 253 94 41 chr12 116313850 116314190 -27968299 + LTR16A LTR ERVL 93 450 0 863 233 71 5 chr12 116314253 116314463 -27968026 - MER58A DNA MER1_type 0 224 1 201 280 0 20 chr12 116314465 116314515 -27967974 - MIR3 SINE MIR -50 158 110 437 268 76 11 chr12 116314521 116314709 -27967780 - MIR SINE MIR -50 158 5 205 356 41 14 chr12 116315202 116315275 -27967214 + MIR SINE MIR 8 82 -180 557 253 167 0 chr12 116315283 116315433 -27967056 + MER5A DNA MER1_type 9 183 -6 300 253 165 0 chr12 116315438 116315517 -27966972 + L2 LINE L2 2983 3074 -198 456 326 50 0 chr12 116315685 116315866 -27966623 - MIR SINE MIR -72 190 1 603 263 82 12 chr12 116316409 116316580 -27965909 - MIR SINE MIR -23 239 57 221 330 75 0 chr12 116316671 116316777 -27965712 + MIR SINE MIR 122 235 -27 262 353 8 57 chr12 116316846 116316968 -27965521 - MIR SINE MIR -62 146 31 273 250 0 0 chr12 116316995 116317059 -27965430 - MIR SINE MIR -59 149 86 201 239 159 12 chr12 116317066 116317186 -27965303 + MIR SINE MIR 8 146 -62 349 232 16 64 chr12 116317666 116317791 -27964698 + MIR SINE MIR 32 150 -112 1556 199 77 24 chr12 116318601 116318977 -27963512 + MSTD LTR MaLR 1 396 0 1837 187 5 72 chr12 116319317 116319735 -27962754 - MLT1B LTR MaLR 0 390 1 715 142 0 0 chr12 116320044 116320185 -27962304 - FLAM_C SINE Alu 0 171 31 374 356 7 0 chr12 116320208 116320343 -27962146 - MIR SINE MIR -36 226 91 229 237 51 0 chr12 116320600 116320659 -27961830 + L1ME LINE L1 5716 5777 -344 6824 25 2 0 chr12 116320742 116321559 -27960930 - L1PA4 LINE L1 -3 6152 5334 636 175 12 32 chr12 116321700 116321948 -27960541 + CT-rich Low_complexity Low_complexity 1 242 0 1000 304 149 15 chr12 116322199 116322741 -27959748 + MLT1L LTR MaLR 1 615 0 189 361 0 16 chr12 116323659 116323720 -27958769 + MIR SINE MIR 20 79 -183 * 365 260 90 0 chr12 116323717 116323817 -27958672 + L2 LINE L2 3188 3296 -17 1064 168 0 0 chr12 116324262 116324423 -27958066 + FRAM SINE Alu 1 158 -18 2347 101 0 13 chr12 116324651 116324957 -27957532 + AluSg SINE Alu 1 302 -8 2009 153 0 10 chr12 116327076 116327377 -27955112 - AluSx SINE Alu -14 298 1 759 293 156 42 chr12 116327611 116328244 -27954245 - L2 LINE L2 -1 3312 2599 465 195 70 144 chr12 116328244 116328459 -27954030 - MIR SINE MIR -35 227 29 306 219 29 131 chr12 116328726 116328863 -27953626 - L1ME3 LINE L1 -9 6153 6031 239 297 0 66 chr12 116329194 116329285 -27953204 + MIR3 SINE MIR 117 201 -7 722 297 42 13 chr12 116329474 116329710 -27952779 + MIR SINE MIR 20 262 0 547 320 115 35 chr12 116330188 116330732 -27951757 + L2 LINE L2 2488 3095 -177 1570 140 25 65 chr12 116330732 116331011 -27951478 + AluJb SINE Alu 1 268 -44 547 320 115 35 chr12 116331011 116331205 -27951284 + L2 LINE L2 3095 3272 0 487 322 0 0 chr12 116331205 116331348 -27951141 + (TGGG)n Simple_repeat Simple_repeat 1 143 0 373 201 4 64 chr12 116331363 116331619 -27950870 + (TGGG)n Simple_repeat Simple_repeat 1 240 0 239 368 9 9 chr12 116331702 116331808 -27950681 + MIR SINE MIR 21 126 -82 272 293 12 12 chr12 116331911 116331993 -27950496 + MIR SINE MIR 68 149 -59 344 245 32 32 chr12 116332345 116332439 -27950050 + MIR3 SINE MIR 110 203 -5 270 271 29 0 chr12 116332760 116332830 -27949659 + CT-rich Low_complexity Low_complexity 5 76 0 202 333 16 0 chr12 116332855 116332918 -27949571 + MIR SINE MIR 37 100 -162 217 246 66 82 chr12 116333612 116333734 -27948755 + MIR3 SINE MIR 81 200 -8 866 229 76 5 chr12 116334266 116334476 -27948013 + MIR SINE MIR 36 260 -2 640 284 21 5 chr12 116334514 116334704 -27947785 + MIR SINE MIR 20 212 -50 209 308 0 0 chr12 116337099 116337151 -27945338 - L2 LINE L2 -1 3312 3261 * 889 248 101 0 chr12 116337126 116337344 -27945145 - MIR SINE MIR -22 240 1 185 240 90 80 chr12 116337354 116337454 -27945035 - L2 LINE L2 -95 3218 3118 418 278 38 55 chr12 116337745 116337909 -27944580 - MIR SINE MIR -63 145 7 182 345 126 8 chr12 116338093 116338212 -27944277 - MIR SINE MIR -20 242 110 619 303 66 5 chr12 116338470 116338668 -27943821 + MIR SINE MIR 50 259 -3 207 239 155 42 chr12 116338674 116338745 -27943744 - MIR SINE MIR -164 98 20 290 306 64 20 chr12 116339185 116339356 -27943133 - MIR SINE MIR -32 176 2 415 282 114 46 chr12 116339435 116339697 -27942792 - L2 LINE L2 -38 3234 2955 748 174 22 62 chr12 116340160 116340338 -27942151 + MIR SINE MIR 20 190 -72 2121 123 10 0 chr12 116340544 116340837 -27941652 + AluSx SINE Alu 1 296 -16 2668 140 0 21 chr12 116341061 116341497 -27940992 + Tigger2a DNA MER2_type 3 429 -5 363 214 167 3 chr12 116341567 116341689 -27940800 - MIR SINE MIR -68 140 34 407 268 174 18 chr12 116342252 116342476 -27940013 - MIR SINE MIR -2 260 2 377 274 44 9 chr12 116342977 116343090 -27939399 + MIR SINE MIR 80 196 -66 1157 192 100 60 chr12 116343523 116343924 -27938565 + MLT1C LTR MaLR 51 467 0 542 217 42 42 chr12 116344158 116344324 -27938165 - MLT1G LTR MaLR -309 281 116 532 219 55 0 chr12 116344334 116344462 -27938027 - L1MD2 LINE L1 -18 6341 6207 279 0 0 0 chr12 116344466 116344497 -27937992 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 671 317 20 20 chr12 116344575 116344824 -27937665 + MIR SINE MIR 1 249 -13 312 331 40 20 chr12 116344824 116344972 -27937517 - MIR SINE MIR -12 250 100 2329 109 0 7 chr12 116345071 116345375 -27937114 - AluSc SINE Alu -7 302 1 263 159 0 0 chr12 116345532 116345576 -27936913 + L2 LINE L2 3249 3292 -21 228 186 34 68 chr12 116345534 116345593 -27936896 + MIR SINE MIR 206 262 0 * 392 262 71 16 chr12 116345605 116345731 -27936758 - MIR SINE MIR -13 249 117 181 206 15 15 chr12 116345902 116345970 -27936519 + (CA)n Simple_repeat Simple_repeat 2 69 0 298 299 103 22 chr12 116346062 116346286 -27936203 + L1MC/D LINE L1 5296 5537 -2271 373 245 19 9 chr12 116346404 116346510 -27935979 - LTR16A1 LTR ERVL -14 443 337 306 213 128 11 chr12 116347430 116347524 -27934965 - MIR SINE MIR -77 185 81 203 240 115 73 chr12 116347982 116348078 -27934411 - MIR SINE MIR -80 182 83 373 224 58 19 chr12 116348491 116348691 -27933798 + (TCTCTG)n Simple_repeat Simple_repeat 1 207 0 187 277 205 0 chr12 116349071 116349154 -27933335 - MIR3 SINE MIR -24 184 85 323 153 17 0 chr12 116349160 116349219 -27933270 + L2 LINE L2 3215 3274 -39 362 310 9 9 chr12 116349254 116349367 -27933122 - MIR SINE MIR -119 143 31 353 322 107 0 chr12 116350229 116350434 -27932055 + LTR33 LTR ERVL 289 515 -6 296 333 83 26 chr12 116350532 116350724 -27931765 + L2 LINE L2 2594 2796 -518 247 180 12 18 chr12 116351970 116352027 -27930462 - MIR SINE MIR -63 145 90 442 259 147 0 chr12 116352120 116352263 -27930226 + MIR SINE MIR 49 212 -50 477 268 30 30 chr12 116352809 116352973 -27929516 - L2 LINE L2 -1 3312 3149 * 853 228 54 42 chr12 116352966 116353207 -27929282 + MIR SINE MIR 10 253 -9 207 266 31 0 chr12 116353268 116353332 -27929157 + L2 LINE L2 3027 3092 -221 723 150 0 8 chr12 116353429 116353549 -27928940 + FRAM SINE Alu 42 160 -16 381 235 25 17 chr12 116354018 116354137 -27928352 - L2 LINE L2 -208 3064 2945 315 0 0 0 chr12 116354163 116354198 -27928291 + (TG)n Simple_repeat Simple_repeat 2 36 0 255 286 134 49 chr12 116354199 116354423 -27928066 - L2 LINE L2 -449 2865 2623 1798 159 0 36 chr12 116355332 116355640 -27926849 + AluJo SINE Alu 1 297 -15 190 317 0 67 chr12 116355876 116355996 -27926493 + L2 LINE L2 2878 2989 -324 292 341 51 42 chr12 116356066 116356283 -27926206 - MIR SINE MIR -25 237 19 581 268 32 0 chr12 116356552 116356709 -27925780 - MIR SINE MIR -81 181 20 243 256 56 11 chr12 116357317 116357407 -27925082 - MIR3 SINE MIR -1 207 114 206 225 200 12 chr12 116357454 116357534 -27924955 + MIR SINE MIR 56 150 -112 407 277 18 0 chr12 116357569 116357681 -27924808 + MER81 DNA DNA 1 114 0 609 209 8 15 chr12 116358755 116358889 -27923600 - FLAM_C SINE Alu 0 133 1 2251 89 52 0 chr12 116358930 116359221 -27923268 - AluSp SINE Alu -7 306 1 504 263 45 0 chr12 116359502 116359635 -27922854 - MIR SINE MIR -18 244 106 186 304 0 0 chr12 116359706 116359752 -27922737 - MIR SINE MIR -98 164 119 323 269 128 14 chr12 116359825 116359966 -27922523 + MIR SINE MIR 27 183 -79 624 219 85 0 chr12 116360065 116360229 -27922260 - MER45A DNA AcHobo 0 178 1 202 232 12 37 chr12 116360382 116360464 -27922025 + GA-rich Low_complexity Low_complexity 4 83 0 1546 134 8 39 chr12 116360847 116361101 -27921388 - AluJb SINE Alu -66 246 1 758 268 68 31 chr12 116361873 116362211 -27920278 - L1MC4a LINE L1 -337 5828 5658 230 286 114 0 chr12 116362462 116362532 -27919957 + MIR SINE MIR 109 186 -76 474 281 89 0 chr12 116363258 116363404 -27919085 - MIR SINE MIR -55 207 49 606 235 42 115 chr12 116363419 116363679 -27918810 + MIR SINE MIR 9 249 -13 201 74 0 0 chr12 116363685 116363712 -27918777 + (TTG)n Simple_repeat Simple_repeat 1 27 0 512 278 210 10 chr12 116363873 116364164 -27918325 - L2 LINE L2 0 3272 2924 512 284 7 7 chr12 116364919 116365067 -27917422 + LTR16A1 LTR ERVL 1 148 -309 298 250 25 0 chr12 116365084 116365164 -27917325 + LTR16A1 LTR ERVL 256 337 -120 475 168 32 56 chr12 116365189 116365314 -27917175 + MER96B DNA MER1_type? 5 126 -291 871 178 0 0 chr12 116365314 116365460 -27917029 + FRAM SINE Alu 1 40 0 229 154 58 0 chr12 116365460 116365512 -27916977 - MER96B DNA MER1_type? -122 295 241 368 188 23 11 chr12 116365533 116365647 -27916842 + LTR16A1 LTR ERVL 377 457 0 1000 196 27 0 chr12 116365832 116366016 -27916473 + MSTB1 LTR MaLR 1 189 -237 277 261 246 7 chr12 116366466 116366608 -27915881 + L2 LINE L2 2924 3099 -173 1578 144 57 0 chr12 116366611 116366875 -27915614 + MSTB1 LTR MaLR 154 432 0 243 0 0 0 chr12 116367341 116367368 -27915121 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 278 314 23 0 chr12 116367547 116367633 -27914856 + MIR SINE MIR 36 123 -85 558 208 0 0 chr12 116368309 116368415 -27914074 + MIR SINE MIR 41 146 -116 220 261 0 0 chr12 116369032 116369078 -27913411 + GA-rich Low_complexity Low_complexity 2 47 0 357 188 12 71 chr12 116369616 116369701 -27912788 - MIR SINE MIR -87 175 96 223 296 6 34 chr12 116370548 116370724 -27911765 + (CATATA)n Simple_repeat Simple_repeat 4 174 0 * 318 247 17 23 chr12 116370610 116370784 -27911705 + (TA)n Simple_repeat Simple_repeat 1 173 0 205 244 0 0 chr12 116370903 116370948 -27911541 - MIR SINE MIR -57 151 107 22 0 0 0 chr12 116371471 116371493 -27910996 + AT_rich Low_complexity Low_complexity 1 22 0 652 203 99 45 chr12 116372134 116372272 -27910217 + MIR SINE MIR 49 203 -59 1576 144 94 21 chr12 116372272 116372612 -27909877 - MLT1A1 LTR MaLR 0 365 1 652 203 99 45 chr12 116372612 116372675 -27909814 + MIR SINE MIR 203 261 -1 452 205 18 27 chr12 116372788 116372900 -27909589 + MIR SINE MIR 56 166 -96 1070 199 13 22 chr12 116372950 116373176 -27909313 + MER58A DNA MER1_type 1 224 0 204 235 0 0 chr12 116374131 116374182 -27908307 + T-rich Low_complexity Low_complexity 1 51 0 785 161 0 0 chr12 116374197 116374321 -27908168 - FLAM_C SINE Alu -9 124 1 226 330 9 19 chr12 116374413 116374519 -27907970 + L2 LINE L2 3184 3288 -25 352 279 0 0 chr12 116374864 116374950 -27907539 + L2 LINE L2 3187 3272 0 3388 139 29 42 chr12 116375217 116375742 -27906747 + L1MB8 LINE L1 5494 6009 -169 2107 150 0 10 chr12 116375742 116376048 -27906441 - AluSx SINE Alu -9 303 1 3388 139 29 42 chr12 116376048 116376211 -27906278 + L1MB8 LINE L1 6009 6173 -5 210 211 39 39 chr12 116376211 116376333 -27906156 + (TTATA)n Simple_repeat Simple_repeat 3 124 0 2519 158 19 0 chr12 116376353 116376771 -27905718 - MSTB LTR MaLR 0 426 1 28 0 0 0 chr12 116376949 116376977 -27905512 + AT_rich Low_complexity Low_complexity 1 28 0 630 26 0 0 chr12 116377039 116377115 -27905374 + (TG)n Simple_repeat Simple_repeat 1 76 0 475 205 17 34 chr12 116377115 116377232 -27905257 + L1ME4a LINE L1 5961 6075 -46 468 273 122 17 chr12 116377693 116377797 -27904692 - MIR SINE MIR -41 221 129 180 0 0 0 chr12 116377797 116377817 -27904672 + (GA)n Simple_repeat Simple_repeat 1 20 0 468 273 122 17 chr12 116377817 116377884 -27904605 - MIR SINE MIR -133 129 32 2021 148 0 7 chr12 116377994 116378292 -27904197 + AluJo SINE Alu 1 296 -16 208 250 0 0 chr12 116378331 116378375 -27904114 + MIR SINE MIR 102 145 -63 517 293 0 0 chr12 116379200 116379340 -27903149 - MIR SINE MIR -70 192 53 220 238 0 0 chr12 116380566 116380608 -27901881 + L2 LINE L2 3226 3267 -5 198 211 140 0 chr12 116380629 116380686 -27901803 + MIR SINE MIR 108 150 -58 842 270 115 51 chr12 116380738 116381252 -27901237 + MLT1H LTR MaLR 3 549 0 219 233 138 35 chr12 116381958 116382074 -27900415 - MIR SINE MIR -12 250 123 2188 163 94 15 chr12 116382324 116382790 -27899699 + MLT1D LTR MaLR 3 505 0 227 206 0 82 chr12 116382982 116383055 -27899434 - MIR SINE MIR -132 130 64 726 133 0 0 chr12 116383070 116383175 -27899314 + AluJb SINE Alu 9 113 -199 274 0 0 0 chr12 116383175 116383208 -27899281 + MLT2A1 LTR ERVL 2 34 -419 1633 117 78 23 chr12 116383327 116383634 -27898855 + MLT2A1 LTR ERVL 120 443 -1 1131 176 32 5 chr12 116383634 116383822 -27898667 + AluJb SINE Alu 107 299 -13 446 252 16 16 chr12 116384377 116384500 -27897989 - MIR SINE MIR -36 226 104 310 268 24 32 chr12 116384842 116384965 -27897524 + MIR SINE MIR 23 144 -118 257 317 139 0 chr12 116384961 116385062 -27897427 + L2 LINE L2 3158 3272 0 * 515 256 83 6 chr12 116385527 116385705 -27896784 + MIR SINE MIR 30 206 -28 370 243 118 41 chr12 116386084 116386253 -27896236 + MLT1J2 LTR MaLR 66 247 -203 240 269 39 13 chr12 116386329 116386407 -27896082 + MLT1J1 LTR MaLR 367 446 0 340 273 82 0 chr12 116386410 116386520 -27895969 - MIR3 SINE MIR -54 154 36 334 274 84 39 chr12 116387042 116387165 -27895324 - MER5A DNA MER1_type -2 187 52 2525 70 3 0 chr12 116387165 116387467 -27895022 + AluY SINE Alu 1 303 -8 334 274 84 39 chr12 116387467 116387522 -27894967 - MER5A DNA MER1_type -137 52 1 691 281 24 5 chr12 116387731 116387941 -27894548 - MIR SINE MIR 0 262 49 217 269 30 0 chr12 116387966 116388033 -27894456 - MIR SINE MIR -108 154 86 364 241 0 0 chr12 116388091 116388174 -27894315 + MIR SINE MIR 109 191 -71 189 206 0 132 chr12 116388224 116388292 -27894197 - MIR3 SINE MIR -36 172 114 261 354 75 19 chr12 116388296 116388457 -27894032 - L2 LINE L2 -1 3271 3102 739 312 109 31 chr12 116389090 116389717 -27892772 + L1ME4a LINE L1 5216 5905 -216 413 291 73 51 chr12 116390543 116390859 -27891630 + L2 LINE L2 2913 3235 -37 693 283 73 0 chr12 116390906 116391111 -27891378 - MIR SINE MIR -35 227 8 250 328 78 17 chr12 116391142 116391322 -27891167 - MIR SINE MIR -43 219 29 312 161 25 42 chr12 116391365 116391483 -27891006 + GA-rich Low_complexity Low_complexity 4 119 0 374 259 47 0 chr12 116391636 116391721 -27890768 - MIR3 SINE MIR -38 170 82 299 211 28 0 chr12 116391819 116391890 -27890599 - MIR SINE MIR -63 145 73 2148 113 50 19 chr12 116391893 116392257 -27890232 - THE1C LTR MaLR 0 375 1 750 222 61 11 chr12 116392337 116392517 -27889972 + MER5A DNA MER1_type 1 189 0 454 239 31 15 chr12 116392578 116392708 -27889781 + MIR SINE MIR 4 135 -127 496 168 20 42 chr12 116392719 116393123 -27889366 + GA-rich Low_complexity Low_complexity 1 395 0 270 205 19 45 chr12 116393158 116393314 -27889175 + GA-rich Low_complexity Low_complexity 1 152 0 295 323 15 0 chr12 116393918 116394048 -27888441 + MER117 DNA MER1_type 32 163 -34 226 234 223 32 chr12 116394506 116394600 -27887889 - L2 LINE L2 -1 3271 3160 2050 119 6 35 chr12 116394619 116394938 -27887551 - AluSx SINE Alu 0 312 3 1719 172 16 10 chr12 116395011 116395319 -27887170 + AluSx SINE Alu 1 310 -2 2027 180 72 39 chr12 116395395 116395884 -27886605 + MLT1D LTR MaLR 1 505 0 498 237 197 15 chr12 116395905 116396103 -27886386 + MIR SINE MIR 21 254 -8 185 182 0 0 chr12 116396421 116396454 -27886035 + L2 LINE L2 3005 3037 -235 256 235 141 0 chr12 116397474 116397559 -27884930 - MIR SINE MIR -79 129 33 243 250 0 0 chr12 116397764 116397820 -27884669 + L2 LINE L2 2994 3049 -223 547 146 13 0 chr12 116397944 116398045 -27884444 - MSTA LTR MaLR -329 103 1 328 164 0 0 chr12 116398325 116398392 -27884097 - L1MC4 LINE L1 0 8042 7976 280 199 45 23 chr12 116398398 116398574 -27883915 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 202 189 85 0 chr12 116398622 116398728 -27883761 + (TA)n Simple_repeat Simple_repeat 2 116 0 254 258 45 0 chr12 116399768 116399834 -27882655 - L2 LINE L2 -39 3274 3206 288 203 14 40 chr12 116399889 116399963 -27882526 + MIR SINE MIR 81 152 -110 1680 92 48 4 chr12 116400095 116400322 -27882167 + AluSg/x SINE Alu 72 308 -4 666 145 176 0 chr12 116400453 116400584 -27881905 - MER5A DNA MER1_type -35 154 1 397 279 151 11 chr12 116400615 116400794 -27881695 + MIR SINE MIR 49 252 -10 255 254 0 0 chr12 116401221 116401280 -27881209 + MIR SINE MIR 81 139 -69 1331 161 5 14 chr12 116401292 116401503 -27880986 + AluJo SINE Alu 1 209 -103 192 238 0 0 chr12 116401683 116401746 -27880743 + G-rich Low_complexity Low_complexity 1 63 0 200 256 0 24 chr12 116401843 116401925 -27880564 + G-rich Low_complexity Low_complexity 2 81 0 268 260 17 33 chr12 116401979 116402160 -27880329 + G-rich Low_complexity Low_complexity 2 179 0 261 140 183 54 chr12 116404652 116404745 -27877744 - L2 LINE L2 -17 3255 3151 * 439 327 78 14 chr12 116404744 116404961 -27877528 - MIR SINE MIR -1 261 31 1755 199 16 81 chr12 116405207 116405699 -27876790 - MER113 DNA MER1_type? -61 460 1 261 57 0 0 chr12 116406053 116406088 -27876401 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 323 285 8 24 chr12 116406274 116406397 -27876092 - L2 LINE L2 -188 3084 2964 858 173 23 6 chr12 116406711 116406884 -27875605 + MER5B DNA MER1_type 1 176 -2 257 234 26 52 chr12 116406925 116407002 -27875487 - L2 LINE L2 -10 3262 3188 452 178 30 40 chr12 116407118 116407219 -27875270 - MER5A DNA MER1_type -77 112 13 453 314 50 36 chr12 116407962 116408182 -27874307 - Charlie8 DNA MER1_type -2194 223 1 264 315 267 16 chr12 116408355 116408515 -27873974 - L2 LINE L2 -2 3311 3192 1998 127 3 0 chr12 116408515 116408807 -27873682 + AluJb SINE Alu 1 293 -19 264 315 267 16 chr12 116408807 116408957 -27873532 - L2 LINE L2 -121 3192 2923 358 196 205 18 chr12 116408971 116409083 -27873406 - MIR SINE MIR -64 198 66 236 275 55 28 chr12 116409699 116409808 -27872681 - MLT1H LTR MaLR -16 526 415 657 216 11 65 chr12 116409842 116410027 -27872462 - MLT1H LTR MaLR -245 304 130 683 292 92 41 chr12 116410362 116410677 -27871812 - LTR16A LTR ERVL -78 372 42 1212 275 26 14 chr12 116410690 116411039 -27871450 - MER115 DNA AcHobo 0 693 341 525 263 249 10 chr12 116411068 116411277 -27871212 - MER115 DNA AcHobo -423 270 12 724 228 181 14 chr12 116411341 116411556 -27870933 + MIR SINE MIR 2 252 -10 202 132 38 0 chr12 116411941 116411994 -27870495 + (TG)n Simple_repeat Simple_repeat 1 55 0 564 122 58 18 chr12 116412005 116412332 -27870157 + (TG)n Simple_repeat Simple_repeat 1 340 0 541 97 51 29 chr12 116412386 116412561 -27869928 + (TG)n Simple_repeat Simple_repeat 2 180 0 778 39 33 44 chr12 116412597 116412778 -27869711 + (TG)n Simple_repeat Simple_repeat 2 180 0 1220 193 52 0 chr12 116413343 116413576 -27868913 - MIR SINE MIR -1 261 17 257 217 17 17 chr12 116413601 116413661 -27868828 + L2 LINE L2 3205 3264 -8 267 291 146 10 chr12 116414333 116414436 -27868053 - L2 LINE L2 0 3313 3197 2141 97 0 13 chr12 116414526 116414825 -27867664 - AluSc SINE Alu -14 295 1 416 308 17 0 chr12 116414919 116415036 -27867453 + MIR3 SINE MIR 90 208 0 1575 138 0 47 chr12 116415713 116416010 -27866479 + AluJo SINE Alu 28 310 -2 269 241 45 98 chr12 116416179 116416291 -27866198 - MIR SINE MIR -62 146 41 278 295 4 0 chr12 116417300 116417550 -27864939 + (TTGG)n Simple_repeat Simple_repeat 1 251 0 244 330 88 24 chr12 116418152 116418316 -27864173 - MIR SINE MIR -51 157 20 766 175 0 35 chr12 116419044 116419187 -27863302 + FLAM_C SINE Alu 2 139 -4 327 276 138 66 chr12 116419263 116419444 -27863045 - MIR SINE MIR -55 207 14 2067 121 0 0 chr12 116419817 116420115 -27862374 + AluSx SINE Alu 1 298 -14 725 182 113 0 chr12 116420248 116420407 -27862082 + MER3 DNA MER1_type 25 201 -8 262 151 0 75 chr12 116420372 116420425 -27862064 - MER3 DNA MER1_type -119 90 42 * 645 292 48 40 chr12 116420432 116420682 -27861807 - MIR SINE MIR 0 262 11 234 248 168 40 chr12 116420972 116421097 -27861392 - LTR33 LTR ERVL -170 351 211 722 321 137 44 chr12 116421258 116421993 -27860496 - L2 LINE L2 0 3272 2468 229 356 0 29 chr12 116422219 116422323 -27860166 - L2 LINE L2 -9 3304 3204 705 256 34 39 chr12 116422430 116422608 -27859881 - L2 LINE L2 -337 2977 2799 2057 231 79 55 chr12 116422608 116423187 -27859302 - MLT1E LTR MaLR 0 593 1 705 256 34 39 chr12 116423187 116423215 -27859274 - L2 LINE L2 -515 2799 2772 299 295 74 29 chr12 116423359 116423514 -27858975 - MIR3 SINE MIR -63 145 13 591 256 19 77 chr12 116423986 116424193 -27858296 + LTR33A LTR ERVL 2 196 -327 280 103 0 0 chr12 116424194 116424233 -27858256 - MSTD LTR MaLR 0 396 358 1170 195 195 24 chr12 116424298 116424626 -27857863 - MSTD LTR MaLR -12 384 1 471 279 39 0 chr12 116424682 116424811 -27857678 + LTR33A LTR ERVL 262 395 -128 1078 301 33 6 chr12 116424813 116425145 -27857344 - LTR16C LTR ERVL -2 489 149 1476 227 38 3 chr12 116425145 116425489 -27857000 + L1ME2 LINE L1 5374 5729 -435 5901 160 29 8 chr12 116425497 116427533 -27854956 + L1PA16 LINE L1 4073 6157 -9 1043 211 66 91 chr12 116427541 116427696 -27854793 + L1ME2 LINE L1 5768 5925 -239 1266 186 34 68 chr12 116427696 116428019 -27854470 + AluJo SINE Alu 1 312 0 2089 112 23 0 chr12 116428024 116428328 -27854161 + AluSx SINE Alu 1 311 -1 1043 211 66 91 chr12 116428328 116428573 -27853916 + L1ME2 LINE L1 5929 6164 0 328 311 25 25 chr12 116429122 116429274 -27853215 + MIR3 SINE MIR 15 164 -79 * 466 304 22 0 chr12 116429264 116429402 -27853087 - MIR SINE MIR -11 251 111 276 277 85 11 chr12 116429414 116429508 -27852981 + MIR SINE MIR 148 248 -14 276 211 0 0 chr12 116429612 116429664 -27852825 - MIR SINE MIR -74 134 83 242 353 0 0 chr12 116429759 116429827 -27852662 + MIR SINE MIR 21 88 -174 423 213 111 9 chr12 116429919 116430027 -27852462 + MIR SINE MIR 35 153 -109 450 237 0 0 chr12 116430085 116430161 -27852328 - MER5A DNA MER1_type -107 82 7 584 257 137 0 chr12 116430192 116430367 -27852122 + MIR SINE MIR 50 248 -14 446 211 61 18 chr12 116430881 116430995 -27851494 + MIR3 SINE MIR 85 203 -5 506 233 175 32 chr12 116431179 116431368 -27851121 - MER20 DNA MER1_type 0 219 4 734 315 29 39 chr12 116431488 116431872 -27850617 - L2 LINE L2 -117 3196 2817 513 330 11 11 chr12 116432677 116432856 -27849633 + MIR SINE MIR 5 183 -79 788 306 19 8 chr12 116433005 116433273 -27849216 + MLT1-int LTR MaLR 330 600 -771 369 332 16 32 chr12 116433463 116433653 -27848836 + MLT1-int LTR MaLR 699 885 -486 335 267 59 37 chr12 116434068 116434203 -27848286 + MLT1K LTR MaLR 160 297 -291 310 308 55 64 chr12 116434287 116434680 -27847809 - L2 LINE L2 -225 3047 2658 1445 248 94 26 chr12 116434854 116435310 -27847179 - LTR16C LTR ERVL -4 487 1 320 276 0 31 chr12 116435336 116435434 -27847055 + GA-rich Low_complexity Low_complexity 5 99 0 297 302 86 7 chr12 116435436 116435575 -27846914 - MIR SINE MIR -13 249 100 398 204 0 68 chr12 116436102 116436190 -27846299 + MIR SINE MIR 64 145 -63 2404 151 75 0 chr12 116436192 116436590 -27845899 + MSTA LTR MaLR 1 428 0 1997 206 80 44 chr12 116436594 116437093 -27845396 - MLT2B1 LTR ERVL -3 517 1 1326 225 178 26 chr12 116437142 116437496 -27844993 + LTR16C LTR ERVL 6 436 -55 189 107 0 0 chr12 116437496 116437524 -27844965 + (TA)n Simple_repeat Simple_repeat 1 28 0 1326 225 178 26 chr12 116437524 116437591 -27844898 + LTR16C LTR ERVL 436 491 0 324 275 11 11 chr12 116437652 116437743 -27844746 + L3 LINE CR1 1294 1384 -193 571 219 6 6 chr12 116438190 116438354 -27844135 + (CAT)n Simple_repeat Simple_repeat 1 164 0 * 614 215 0 17 chr12 116438336 116438513 -27843976 + (CACCAT)n Simple_repeat Simple_repeat 3 176 0 205 298 0 0 chr12 116438518 116438565 -27843924 + (CCA)n Simple_repeat Simple_repeat 3 49 0 735 196 0 0 chr12 116438567 116438730 -27843759 + (CAT)n Simple_repeat Simple_repeat 3 165 0 278 255 37 125 chr12 116438745 116438961 -27843528 - MIR SINE MIR -46 216 20 237 138 0 121 chr12 116438980 116439038 -27843451 - L2 LINE L2 0 3313 3263 * 518 250 234 11 chr12 116439006 116439194 -27843295 - MIR SINE MIR -13 249 20 338 319 24 60 chr12 116439440 116439691 -27842798 - L2 LINE L2 -213 3059 2818 230 280 10 16 chr12 116440093 116440169 -27842320 + MIR SINE MIR 89 145 -63 228 163 0 0 chr12 116440180 116440223 -27842266 + (TTA)n Simple_repeat Simple_repeat 3 45 0 627 276 177 65 chr12 116440275 116440838 -27841651 - L2 LINE L2 -13 3259 2620 294 366 33 13 chr12 116441474 116441627 -27840862 - L2 LINE L2 -8 3264 3109 1940 98 87 39 chr12 116441685 116442043 -27840446 - THE1C LTR MaLR 0 375 1 756 212 17 39 chr12 116442082 116442261 -27840228 - MIR SINE MIR -59 203 29 209 272 109 11 chr12 116442555 116442647 -27839842 - MIR SINE MIR -65 143 43 414 280 47 0 chr12 116442710 116442817 -27839672 + MIR3 SINE MIR 77 188 -20 1219 224 12 45 chr12 116443648 116443983 -27838506 + MER46C DNA MER2_type 15 338 0 250 241 38 13 chr12 116443983 116444062 -27838427 + L1MC/D LINE L1 5715 5795 -2013 307 231 90 0 chr12 116444093 116444171 -27838318 - MIR SINE MIR -88 174 90 7362 51 3 1 chr12 116444208 116445199 -27837290 + L1PA5 LINE L1 5162 6154 0 207 0 0 0 chr12 116445729 116445752 -27836737 + (TG)n Simple_repeat Simple_repeat 1 23 0 481 323 39 0 chr12 116445810 116445965 -27836524 - MIR SINE MIR -55 207 47 434 282 20 93 chr12 116446047 116446292 -27836197 - L2 LINE L2 -187 3126 2865 4962 26 0 2 chr12 116446292 116446857 -27835632 + L1PA5 LINE L1 5576 6139 -15 243 0 0 0 chr12 116446857 116446884 -27835605 + (TA)n Simple_repeat Simple_repeat 1 27 0 434 282 20 93 chr12 116446884 116447004 -27835485 - L2 LINE L2 -446 2867 2785 280 281 22 0 chr12 116447012 116447101 -27835388 + MER113 DNA MER1_type? 295 385 -136 381 214 10 41 chr12 116447158 116447256 -27835233 + MLT2C1 LTR ERVL 1 95 -302 1208 194 59 45 chr12 116447467 116447820 -27834669 + MLT2C1 LTR ERVL 26 395 -2 587 270 137 5 chr12 116447939 116448150 -27834339 - MIR SINE MIR -18 244 6 292 301 10 19 chr12 116448474 116448577 -27833912 + MIR SINE MIR 19 120 -88 269 275 119 28 chr12 116448629 116448738 -27833751 - MIR3 SINE MIR -54 154 36 908 215 5 16 chr12 116449072 116449263 -27833226 - MER5A DNA MER1_type 0 189 1 546 328 46 0 chr12 116449328 116449523 -27832966 + MIR SINE MIR 45 248 -14 493 181 110 0 chr12 116449603 116449730 -27832759 - L1MC4 LINE L1 -2 8040 7900 448 157 34 11 chr12 116449815 116449904 -27832585 - MLT1D LTR MaLR -2 503 413 419 218 0 0 chr12 116449884 116449962 -27832527 + MLT1D LTR MaLR 369 446 -59 * 815 171 0 0 chr12 116449992 116450121 -27832368 - FLAM_C SINE Alu -4 129 1 298 180 66 0 chr12 116450121 116450182 -27832307 + MLT1D LTR MaLR 559 623 -3 317 247 72 10 chr12 116450185 116450282 -27832207 - L1MC4 LINE L1 -734 7308 7206 772 264 54 12 chr12 116450298 116450540 -27831949 - MIR SINE MIR -8 254 3 209 263 18 0 chr12 116450558 116450615 -27831874 - MIR3 SINE MIR -51 157 100 237 315 14 0 chr12 116451058 116451131 -27831358 - L2 LINE L2 -38 3275 3202 1894 187 60 42 chr12 116451237 116451687 -27830802 - MER74C LTR ERVL 0 460 3 213 65 0 0 chr12 116451687 116451718 -27830771 + (A)n Simple_repeat Simple_repeat 1 31 0 254 172 313 0 chr12 116451758 116451857 -27830632 + MIR SINE MIR 108 237 -25 195 42 0 0 chr12 116451898 116451922 -27830567 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 342 169 0 0 chr12 116452195 116452260 -27830229 + CT-rich Low_complexity Low_complexity 2 66 0 1761 95 114 8 chr12 116452452 116452715 -27829774 + AluSg SINE Alu 1 291 -19 224 254 300 31 chr12 116453180 116453310 -27829179 + MIR3 SINE MIR 18 182 -26 2187 70 0 11 chr12 116453582 116453867 -27828622 + AluY SINE Alu 21 302 -9 332 194 90 60 chr12 116454318 116454452 -27828037 + MIR SINE MIR 39 176 -86 199 125 143 54 chr12 116454457 116454513 -27827976 + MER5B DNA MER1_type 1 61 -117 2451 259 46 34 chr12 116454533 116455448 -27827041 + L1ME LINE L1 12 1008 -5253 787 203 0 0 chr12 116455448 116455581 -27826908 + FLAM_C SINE Alu 1 133 0 2451 259 46 34 chr12 116455581 116455726 -27826763 + L1ME LINE L1 1008 1150 -5111 267 268 158 0 chr12 116455809 116455891 -27826598 - MER5A DNA MER1_type -86 103 9 788 236 40 0 chr12 116455907 116456106 -27826383 + MER3 DNA MER1_type 1 207 -2 492 262 0 0 chr12 116456938 116457041 -27825448 + MIR SINE MIR 80 182 -80 192 258 34 101 chr12 116457221 116457310 -27825179 - L3b LINE CR1 -34 1549 1467 * 466 265 163 0 chr12 116457244 116457391 -27825098 - MER5A DNA MER1_type -6 183 13 557 265 48 7 chr12 116457513 116457660 -27824829 - MIR SINE MIR -107 155 3 492 247 117 19 chr12 116457756 116457852 -27824637 + MER5B DNA MER1_type 1 86 -92 1990 142 0 0 chr12 116457852 116458147 -27824342 + AluJb SINE Alu 1 295 -17 492 247 117 19 chr12 116458147 116458212 -27824277 + MER5B DNA MER1_type 86 178 0 280 270 54 0 chr12 116459430 116459504 -27822985 + MIR SINE MIR 50 127 -81 740 295 0 0 chr12 116460277 116460450 -27822039 - MER102a DNA MER1_type 0 330 158 935 215 10 43 chr12 116460451 116460660 -27821829 + MIR SINE MIR 59 260 -2 1436 185 99 102 chr12 116461049 116461558 -27820931 + L1MC5 LINE L1 6935 7444 -517 1621 163 14 10 chr12 116461558 116461847 -27820642 + AluJo SINE Alu 1 290 -22 1436 185 99 102 chr12 116461847 116461944 -27820545 + L1MC5 LINE L1 7444 7540 -421 1663 239 51 32 chr12 116461944 116462438 -27820051 + MLT1D LTR MaLR 1 503 -2 1436 185 99 102 chr12 116462438 116462465 -27820024 + L1MC5 LINE L1 7540 7566 -395 786 59 49 0 chr12 116462465 116462567 -27819922 + L1PA11 LINE L1 6065 6171 -3 1436 185 99 102 chr12 116462567 116462655 -27819834 + L1MC5 LINE L1 7566 7656 -305 710 227 68 26 chr12 116462753 116463122 -27819367 - LTR16A1 LTR ERVL -49 408 1 1431 334 86 34 chr12 116463636 116464550 -27817939 - ERVL LTR ERVL -776 4988 4012 2122 120 0 3 chr12 116464550 116464849 -27817640 + AluSx SINE Alu 1 298 -14 1431 334 86 34 chr12 116464849 116464980 -27817509 - ERVL LTR ERVL -1752 4012 3889 274 128 0 0 chr12 116464998 116465037 -27817452 - MSTB LTR MaLR 0 428 390 1948 137 16 0 chr12 116465037 116465345 -27817144 + AluSq SINE Alu 1 539 0 210 140 20 0 chr12 116465345 116465571 -27816918 + GA-rich Low_complexity Low_complexity 3 180 0 723 104 0 0 chr12 116465572 116465678 -27816811 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 2067 166 32 63 chr12 116465678 116466031 -27816458 - MSTB LTR MaLR -29 397 57 1696 158 68 0 chr12 116466031 116466323 -27816166 - AluJb SINE Alu 0 312 1 2067 166 32 63 chr12 116466323 116466379 -27816110 - MSTB LTR MaLR -369 57 1 360 299 87 0 chr12 116466397 116466524 -27815965 - ERVL LTR ERVL -1907 3857 3720 685 296 0 26 chr12 116466622 116466848 -27815641 - ERVL LTR ERVL -2147 3507 3288 2353 180 22 13 chr12 116466874 116467330 -27815159 - MLT1C LTR MaLR 0 467 8 1278 312 31 14 chr12 116467363 116467786 -27814703 - ERVL LTR ERVL -2533 3231 2802 1457 176 16 35 chr12 116467786 116467816 -27814673 - AluJo SINE Alu -5 307 278 984 119 11 49 chr12 116467816 116467893 -27814596 - L1MA5A LINE L1 -3 6294 6216 1416 180 0 101 chr12 116467893 116468221 -27814268 + AluJo SINE Alu 1 295 -17 984 119 11 49 chr12 116468221 116468328 -27814161 - L1MA5A LINE L1 -81 6216 6117 303 28 0 0 chr12 116468329 116468365 -27814124 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1457 176 16 35 chr12 116468365 116468645 -27813844 - AluJo SINE Alu -33 279 1 234 108 0 0 chr12 116468646 116468683 -27813806 - L1MA5A LINE L1 -169 6128 6092 * 1419 127 104 8 chr12 116468671 116468920 -27813569 + L1MA5A LINE L1 5822 6097 -200 2003 291 33 40 chr12 116468923 116469337 -27813152 - ERVL LTR ERVL -2226 2770 2355 5217 66 10 4 chr12 116469337 116470030 -27812459 + SVA Other Other 673 1369 -17 275 19 37 37 chr12 116470037 116470091 -27812398 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 2003 291 33 40 chr12 116470091 116470361 -27812128 - ERVL LTR ERVL -2647 2349 2083 2663 201 58 42 chr12 116470541 116471096 -27811393 - MLT1E2 LTR MaLR 0 626 59 1411 229 48 53 chr12 116471096 116471146 -27811343 - MSTD LTR MaLR 0 396 347 2485 56 0 3 chr12 116471146 116471452 -27811037 - AluY SINE Alu -6 305 1 1411 229 48 53 chr12 116471452 116471799 -27810690 - MSTD LTR MaLR -49 347 1 2663 201 58 42 chr12 116471799 116471859 -27810630 - MLT1E2 LTR MaLR -567 59 1 285 185 37 0 chr12 116471933 116471987 -27810502 - ERVL LTR ERVL -3497 2267 2212 1075 306 30 27 chr12 116471992 116472565 -27809924 - ERVL LTR ERVL -3144 1871 1323 1968 134 13 0 chr12 116472565 116472863 -27809626 - AluSx SINE Alu -10 302 1 1075 306 30 27 chr12 116472863 116472922 -27809567 - ERVL LTR ERVL -3692 1323 1266 1724 319 39 44 chr12 116473138 116473976 -27808513 - ERVL LTR ERVL -4130 866 33 628 180 0 0 chr12 116473992 116474145 -27808344 - AluJ SINE Alu 0 335 183 603 190 0 9 chr12 116474136 116474252 -27808237 - AluJ SINE Alu -170 142 28 * 1319 225 54 34 chr12 116474252 116474639 -27807850 - LTR16A1 LTR ERVL -17 440 46 762 150 8 23 chr12 116474763 116474896 -27807593 + FLAM_A SINE Alu 3 133 0 920 259 21 41 chr12 116474934 116475288 -27807201 + L1ME1 LINE L1 5820 6161 -5 461 270 35 0 chr12 116475390 116475505 -27806984 - MIR SINE MIR -125 137 19 552 264 74 80 chr12 116475567 116475957 -27806532 - MLT1K LTR MaLR -20 568 181 782 267 60 73 chr12 116476241 116476500 -27805989 - LTR16B LTR ERVL -3 461 209 1284 193 128 67 chr12 116476500 116476555 -27805934 + MLT1D LTR MaLR 1 51 -454 2321 77 0 7 chr12 116476555 116476865 -27805624 + AluSc SINE Alu 1 308 -1 1284 193 128 67 chr12 116476865 116477285 -27805204 + MLT1D LTR MaLR 51 505 0 782 267 60 73 chr12 116477285 116477490 -27804999 - LTR16B LTR ERVL -255 209 3 203 212 15 121 chr12 116477494 116477560 -27804929 + L2 LINE L2 3207 3265 -7 232 319 83 0 chr12 116477580 116477652 -27804837 + L3 LINE CR1 1294 1371 -206 248 292 0 0 chr12 116477710 116477775 -27804714 + (TATG)n Simple_repeat Simple_repeat 3 67 0 240 145 177 0 chr12 116477805 116477867 -27804622 - MIR SINE MIR -71 191 119 * 382 282 163 53 chr12 116477861 116477956 -27804533 - MIR SINE MIR -17 245 162 1347 189 92 4 chr12 116477956 116478237 -27804252 - AluJo SINE Alu -6 306 1 382 282 163 53 chr12 116478237 116478350 -27804139 - MIR SINE MIR -100 162 14 300 219 23 94 chr12 116478881 116479008 -27803481 + MIR3 SINE MIR 1 118 -90 653 310 37 12 chr12 116479008 116479250 -27803239 + MIR SINE MIR 2 249 -13 1505 164 51 11 chr12 116479274 116479549 -27802940 + AluJb SINE Alu 13 298 -14 278 260 120 10 chr12 116479855 116479955 -27802534 + MIR SINE MIR 86 196 -66 706 299 10 0 chr12 116479957 116480154 -27802335 - MIR SINE MIR -51 211 13 1135 56 14 0 chr12 116480503 116480647 -27801842 - AluSc SINE Alu -8 301 156 264 320 0 0 chr12 116480834 116480912 -27801577 + L2 LINE L2 3236 3313 0 575 317 97 4 chr12 116481133 116481360 -27801129 - MIR SINE MIR -8 254 7 3300 87 5 11 chr12 116481824 116482271 -27800218 - MLT2A1 LTR ERVL 0 444 1 2490 68 0 0 chr12 116482458 116482767 -27799722 + AluSg SINE Alu 2 310 0 1045 244 68 73 chr12 116482769 116483207 -27799282 + MLT1L LTR MaLR 121 556 -59 291 176 306 24 chr12 116483831 116483916 -27798573 + MIR SINE MIR 37 145 -63 2100 128 3 3 chr12 116484024 116484336 -27798153 - AluSx SINE Alu 0 312 1 930 159 0 12 chr12 116484340 116484503 -27797986 - FRAM SINE Alu -15 161 1 3293 82 2 2 chr12 116484515 116484956 -27797533 - L1PB2 LINE L1 -2 6149 5709 939 206 68 103 chr12 116485044 116485443 -27797046 + MLT1C LTR MaLR 6 390 0 191 311 33 33 chr12 116485443 116485491 -27796998 + L2 LINE L2 3211 3261 -11 276 100 0 0 chr12 116485491 116485531 -27796958 + (TGAG)n Simple_repeat Simple_repeat 4 43 0 191 311 33 33 chr12 116485531 116485543 -27796946 + L2 LINE L2 3260 3271 -1 192 77 0 0 chr12 116485634 116485660 -27796829 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 342 56 14 0 chr12 116486802 116486853 -27795636 + FLAM SINE Alu 86 124 -9 629 260 44 18 chr12 116486873 116487100 -27795389 + L2 LINE L2 2842 3074 -198 21 0 0 0 chr12 116487129 116487150 -27795339 + AT_rich Low_complexity Low_complexity 1 21 0 309 222 108 48 chr12 116487383 116487463 -27795026 + L1ME4a LINE L1 5945 6019 -102 1828 233 98 17 chr12 116487463 116487944 -27794545 - MLT2B1 LTR ERVL 0 520 1 309 222 108 48 chr12 116487944 116488030 -27794459 + L1ME4a LINE L1 6019 6121 0 217 250 67 17 chr12 116488245 116488305 -27794184 + MIR SINE MIR 102 164 -98 5311 128 12 55 chr12 116488305 116488507 -27793982 + MER4D LTR ERV1 1 210 -693 3964 107 9 2 chr12 116488507 116489057 -27793432 + MER41A LTR ERV1 1 554 0 5311 128 12 55 chr12 116489057 116489194 -27793295 + MER4D LTR ERV1 210 351 -552 2140 100 0 0 chr12 116489194 116489483 -27793006 - AluSx SINE Alu -23 289 1 5311 128 12 55 chr12 116489483 116489821 -27792668 + MER4D LTR ERV1 351 631 -272 2206 92 10 10 chr12 116489821 116490124 -27792365 + AluSq SINE Alu 9 311 -2 5311 128 12 55 chr12 116490124 116490377 -27792112 + MER4D LTR ERV1 631 893 -10 659 307 32 0 chr12 116490503 116490721 -27791768 + MIR SINE MIR 35 259 -3 304 299 110 39 chr12 116491200 116491535 -27790954 + L1MC/D LINE L1 5406 5764 -2044 1646 177 133 31 chr12 116491699 116492153 -27790336 + LTR10A LTR ERV1 1 548 -61 4146 93 9 0 chr12 116492433 116492982 -27789507 - MER41A LTR ERV1 0 554 1 2428 59 0 7 chr12 116493024 116493330 -27789159 + AluY SINE Alu 1 304 -7 1275 148 219 47 chr12 116493351 116493735 -27788754 - LTR7 LTR ERV1 0 450 1 1903 120 0 78 chr12 116494346 116494680 -27787809 + AluSp SINE Alu 1 308 -5 2194 116 0 3 chr12 116494808 116495118 -27787371 - AluSx SINE Alu -3 309 1 258 258 25 75 chr12 116495683 116495803 -27786686 - MLT1K LTR MaLR -35 553 440 244 100 20 20 chr12 116495951 116496001 -27786488 + (TC)n Simple_repeat Simple_repeat 1 50 0 679 188 21 35 chr12 116496144 116496288 -27786201 - MLT1F LTR MaLR -1 566 425 624 232 69 58 chr12 116496307 116496576 -27785913 + MER4C LTR ERV1 5 216 -249 1798 146 32 0 chr12 116496576 116496856 -27785633 - AluSx SINE Alu -23 289 1 624 232 69 58 chr12 116496856 116497109 -27785380 + MER4C LTR ERV1 216 465 0 691 214 62 31 chr12 116497109 116497301 -27785188 - MLT1F LTR MaLR -178 364 167 24 53 0 0 chr12 116497313 116497351 -27785138 + AT_rich Low_complexity Low_complexity 1 38 0 659 216 116 28 chr12 116497351 116497532 -27784957 - MLT1F LTR MaLR -369 198 2 3289 131 80 0 chr12 116497587 116498100 -27784389 - MER41C LTR ERV1 0 554 1 397 200 23 85 chr12 116498275 116498405 -27784084 - MLT1K LTR MaLR -290 298 177 412 309 71 16 chr12 116498411 116498595 -27783894 + MIR SINE MIR 34 227 -35 2037 108 3 22 chr12 116498658 116498972 -27783517 - AluSg SINE Alu -2 308 1 1157 121 17 0 chr12 116498974 116499148 -27783341 - AluSg/x SINE Alu -10 302 126 183 42 0 0 chr12 116499148 116499172 -27783317 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2199 91 0 0 chr12 116499172 116499457 -27783032 - AluSx SINE Alu -27 285 1 403 249 59 132 chr12 116499537 116499944 -27782545 - MLT1K LTR MaLR -183 405 3 * 972 199 42 11 chr12 116499944 116500131 -27782358 + MER58A DNA MER1_type 32 224 0 576 288 43 62 chr12 116500888 116500970 -27781519 + MIR SINE MIR 7 89 -173 1389 256 102 18 chr12 116500970 116501423 -27781066 - LTR16C LTR ERVL 0 491 1 576 288 43 62 chr12 116501423 116501597 -27780892 + MIR SINE MIR 89 258 -4 1207 295 94 20 chr12 116503126 116503507 -27778982 - MLT1K LTR MaLR -24 564 138 4197 84 0 12 chr12 116503507 116504066 -27778423 + MER41A LTR ERV1 3 554 0 1207 295 94 20 chr12 116504066 116504172 -27778317 - MLT1K LTR MaLR -450 138 41 302 271 49 33 chr12 116504294 116504416 -27778073 - MIR SINE MIR -109 153 30 311 250 0 11 chr12 116504904 116504992 -27777497 + L1ME4a LINE L1 5614 5700 -421 2071 107 3 3 chr12 116505056 116505347 -27777142 + AluSx SINE Alu 9 299 -13 568 138 0 0 chr12 116505452 116505539 -27776950 + FRAM SINE Alu 75 161 -15 1909 202 96 52 chr12 116505583 116506084 -27776405 + MLT1F LTR MaLR 11 533 -9 206 304 72 0 chr12 116506900 116506969 -27775520 - MER91C DNA MER1_type -30 110 37 * 600 221 38 0 chr12 116506966 116507097 -27775392 + MIR SINE MIR 116 251 -11 488 297 36 5 chr12 116507337 116507532 -27774957 - L1MC/D LINE L1 -2023 5785 5585 357 202 11 64 chr12 116508483 116508577 -27773912 - L2 LINE L2 -3 3269 3181 384 167 97 0 chr12 116508579 116508651 -27773838 + Tigger5 DNA MER2_type 1 79 -2244 302 290 57 40 chr12 116508724 116508848 -27773641 + L1ME4a LINE L1 5951 6076 -45 250 273 83 8 chr12 116508870 116508991 -27773498 + L1ME4a LINE L1 5830 5959 -162 1787 151 0 33 chr12 116509117 116509422 -27773067 + AluJb SINE Alu 1 295 -17 983 142 0 0 chr12 116510704 116510845 -27771644 - AluJb SINE Alu -171 141 1 444 82 0 0 chr12 116510871 116510932 -27771557 + (TA)n Simple_repeat Simple_repeat 2 62 0 247 327 47 33 chr12 116510951 116511101 -27771388 - L1ME LINE L1 -211 5910 5759 574 172 16 0 chr12 116511729 116511857 -27770632 + G-rich Low_complexity Low_complexity 1 130 0 311 227 17 101 chr12 116512002 116512121 -27770368 - MIR SINE MIR -65 143 35 790 299 72 52 chr12 116512283 116512692 -27769797 + L2 LINE L2 2485 2919 -394 1453 160 24 35 chr12 116512692 116512979 -27769510 + AluJo SINE Alu 18 301 -11 790 299 72 52 chr12 116512979 116513165 -27769324 + L2 LINE L2 2919 3100 -213 707 299 66 5 chr12 116513628 116513839 -27768650 - MIR SINE MIR -31 231 8 265 327 0 0 chr12 116514459 116514572 -27767917 + (TG)n Simple_repeat Simple_repeat 2 114 0 2075 120 0 10 chr12 116514877 116515177 -27767312 - AluSx SINE Alu -7 305 9 376 252 52 57 chr12 116515483 116515693 -27766796 + MLT1J2 LTR MaLR 265 450 0 200 302 0 0 chr12 116515750 116515803 -27766686 + MIR3 SINE MIR 150 202 -6 662 224 28 0 chr12 116516236 116516379 -27766110 + MIR SINE MIR 38 184 -78 612 158 0 0 chr12 116517413 116517527 -27764962 + G-rich Low_complexity Low_complexity 4 117 0 1805 255 52 18 chr12 116518525 116519737 -27762752 + L1MC4 LINE L1 6502 7902 -140 395 289 135 6 chr12 116519775 116519931 -27762558 - MIR SINE MIR -1 261 86 264 337 116 0 chr12 116519939 116520034 -27762455 - L2 LINE L2 -5 3267 3162 314 343 34 7 chr12 116520149 116520295 -27762194 - L2 LINE L2 -463 2851 2702 1919 141 0 13 chr12 116520302 116520600 -27761889 - AluSx SINE Alu -18 294 1 1259 160 15 0 chr12 116521137 116521343 -27761146 + MER3 DNA MER1_type 1 209 0 324 274 42 116 chr12 116522111 116522352 -27760137 + L2 LINE L2 2472 2694 -620 868 293 124 27 chr12 116522353 116522691 -27759798 - MLT1I LTR MaLR 0 409 39 408 304 17 0 chr12 116522691 116522806 -27759683 - MIR3 SINE MIR -17 191 75 366 351 74 0 chr12 116522892 116523040 -27759449 - L2 LINE L2 -1 3271 3113 1806 117 9 50 chr12 116523118 116523435 -27759054 - AluSq SINE Alu -9 304 1 195 275 0 0 chr12 116523695 116523735 -27758754 + L2 LINE L2 3273 3312 -1 1660 119 9 95 chr12 116523746 116524083 -27758406 + AluY SINE Alu 1 308 -3 1449 231 75 46 chr12 116524365 116524777 -27757712 + LTR16C LTR ERVL 68 491 0 1633 174 10 7 chr12 116525403 116525696 -27756793 - AluJo SINE Alu -18 294 1 389 207 177 52 chr12 116525910 116526083 -27756406 + MIR SINE MIR 15 212 -50 3188 150 72 16 chr12 116526326 116526905 -27755584 + LTR9 LTR ERV1 1 612 0 607 210 142 45 chr12 116526942 116527249 -27755240 - MLT1D LTR MaLR -134 333 8 196 301 52 73 chr12 116527297 116527433 -27755056 + L2 LINE L2 3139 3271 -42 621 195 175 0 chr12 116528447 116528601 -27753888 - MER5A DNA MER1_type 0 189 9 376 278 16 63 chr12 116528749 116528875 -27753614 + MIR3 SINE MIR 88 207 -1 1943 274 73 6 chr12 116528943 116529493 -27752996 + MLT1K LTR MaLR 2 588 0 258 269 97 11 chr12 116529610 116529703 -27752786 - MIR SINE MIR -62 146 46 202 247 202 0 chr12 116529929 116530018 -27752471 - MIR3 SINE MIR -3 205 99 1736 164 46 49 chr12 116530078 116530236 -27752253 + MLT1A1 LTR MaLR 1 158 -207 1952 138 0 0 chr12 116530236 116530525 -27751964 + AluSx SINE Alu 1 289 -23 1736 164 46 49 chr12 116530525 116530732 -27751757 + MLT1A1 LTR MaLR 158 365 0 2153 85 3 7 chr12 116530806 116531101 -27751388 - AluSp SINE Alu -19 294 1 2149 97 38 50 chr12 116531765 116532106 -27750383 + MER1B DNA MER1_type 1 337 0 280 197 288 15 chr12 116532118 116532184 -27750305 + L2 LINE L2 3208 3291 -22 378 257 188 103 chr12 116532252 116532758 -27749731 - MLT1H LTR MaLR 0 549 1 656 308 42 16 chr12 116532933 116533199 -27749290 - MER102a DNA MER1_type -1087 330 53 1534 188 0 0 chr12 116533199 116533465 -27749024 + AluJo SINE Alu 1 266 -46 656 308 42 16 chr12 116533465 116533510 -27748979 - MER102a DNA MER1_type -1364 53 11 395 200 29 0 chr12 116533611 116533681 -27748808 + L2 LINE L2 3168 3239 -33 253 258 32 0 chr12 116533687 116533749 -27748740 + GA-rich Low_complexity Low_complexity 1 64 0 1798 154 33 73 chr12 116533807 116533974 -27748515 + MLT1B LTR MaLR 11 183 -207 2396 108 33 25 chr12 116533974 116534335 -27748154 + THE1B LTR MaLR 1 364 0 1798 154 33 73 chr12 116534335 116534563 -27747926 + MLT1B LTR MaLR 183 390 0 438 223 50 50 chr12 116534628 116534767 -27747722 - MIR SINE MIR -50 212 74 651 305 127 16 chr12 116534949 116535326 -27747163 + LTR16C LTR ERVL 72 490 -1 3119 43 3 0 chr12 116535643 116536018 -27746471 - L1PA5 LINE L1 0 6154 5779 642 198 16 55 chr12 116536036 116536218 -27746271 + L1P LINE L1 4861 5035 -1111 3369 156 29 4 chr12 116536228 116536519 -27745970 + L1PA16 LINE L1 4706 4988 -1178 1977 138 0 0 chr12 116536519 116536815 -27745674 - AluSx SINE Alu -16 296 1 3369 156 29 4 chr12 116536815 116537578 -27744911 + L1PA16 LINE L1 4988 5780 -386 1906 162 0 0 chr12 116537596 116537898 -27744591 + AluJb SINE Alu 1 302 -10 347 157 14 0 chr12 116537907 116537977 -27744512 + GA-rich Low_complexity Low_complexity 4 74 0 2655 128 0 0 chr12 116537988 116538377 -27744112 + L1PA16 LINE L1 5769 6157 -9 431 272 157 55 chr12 116538388 116538743 -27743746 + L1ME LINE L1 5272 5687 -434 2052 100 38 0 chr12 116538743 116539034 -27743455 + AluSx SINE Alu 3 304 -8 431 272 157 55 chr12 116539034 116539091 -27743398 + L1ME LINE L1 5687 5737 -384 241 347 103 29 chr12 116539122 116539364 -27743125 - LTR16C LTR ERVL -55 436 177 681 330 102 18 chr12 116540067 116540509 -27741980 + MLT1K LTR MaLR 97 575 -13 351 272 155 0 chr12 116540961 116541064 -27741425 - MIR SINE MIR -1 261 143 368 200 12 25 chr12 116541161 116541241 -27741248 + MLT1K LTR MaLR 187 265 -323 209 339 115 15 chr12 116541614 116541744 -27740745 - MIR SINE MIR -118 144 2 1018 276 134 31 chr12 116542042 116542263 -27740226 + L2 LINE L2 2414 2611 -661 1388 255 99 27 chr12 116542263 116542749 -27739740 + LTR33A LTR ERVL 3 523 0 1018 276 134 31 chr12 116542749 116543241 -27739248 + L2 LINE L2 2611 3224 -48 2612 197 9 60 chr12 116543241 116543825 -27738664 - MLT2B3 LTR ERVL 0 554 1 1018 276 134 31 chr12 116543825 116543880 -27738609 + L2 LINE L2 3224 3272 0 274 297 33 0 chr12 116543942 116544033 -27738456 - LTR16A1 LTR ERVL 0 457 364 372 281 64 41 chr12 116544344 116544515 -27737974 + MER20B DNA MER1_type 43 217 -566 558 207 18 0 chr12 116544520 116544631 -27737858 - MIR3 SINE MIR -54 154 42 576 185 134 8 chr12 116545515 116545634 -27736855 - L2 LINE L2 0 3313 3180 1831 145 0 7 chr12 116545677 116545966 -27736523 + AluSx SINE Alu 1 287 -25 2401 48 0 3 chr12 116546536 116546831 -27735658 + AluY SINE Alu 1 294 -17 2038 94 7 17 chr12 116547167 116547464 -27735025 + AluJo SINE Alu 1 294 -18 370 305 17 52 chr12 116547704 116547743 -27734746 - MIR SINE MIR -31 231 192 1688 154 0 35 chr12 116547743 116548054 -27734435 - AluJo SINE Alu -12 300 1 370 305 17 52 chr12 116548054 116548188 -27734301 - MIR SINE MIR -70 192 64 949 230 211 17 chr12 116548224 116548663 -27733826 + L2 LINE L2 2741 3264 -49 358 214 76 99 chr12 116549448 116549579 -27732910 + L1MC4a LINE L1 6058 6185 -1623 249 182 0 55 chr12 116549587 116549642 -27732847 + MER5A DNA MER1_type 7 58 -131 966 165 0 12 chr12 116549669 116549833 -27732656 + AluSg/x SINE Alu 130 291 -21 606 186 114 122 chr12 116549840 116550103 -27732386 - L1MD3 LINE L1 -10 7985 7725 * 928 259 111 3 chr12 116550097 116550394 -27732095 - L1MC4 LINE L1 -231 7811 7483 1737 148 52 3 chr12 116550550 116550841 -27731648 + AluJb SINE Alu 1 305 -7 1795 165 0 16 chr12 116551321 116551624 -27730865 + AluJb SINE Alu 1 298 -14 2400 113 10 15 chr12 116551634 116551775 -27730714 + L1MB3 LINE L1 5796 5936 -247 3305 119 40 2 chr12 116551775 116552254 -27730235 - LOR1a LTR ERV1 0 497 1 2400 113 10 15 chr12 116552254 116552501 -27729988 + L1MB3 LINE L1 5936 6182 -1 210 188 21 0 chr12 116552860 116552908 -27729581 + L2 LINE L2 3265 3313 0 1133 119 11 23 chr12 116553358 116553535 -27728954 + LTR9 LTR ERV1 438 612 0 254 200 0 0 chr12 116553537 116553582 -27728907 + HUERS-P3 LTR ERV1 2 46 -8873 1423 126 0 0 chr12 116553633 116553832 -27728657 + HUERS-P3 LTR ERV1 8720 8918 -1 2694 155 92 14 chr12 116553832 116554323 -27728166 + LTR9 LTR ERV1 1 529 -83 4147 170 4 7 chr12 116554339 116555091 -27727398 + L1MA4 LINE L1 5551 6300 0 499 158 63 0 chr12 116555098 116555193 -27727296 - MLT1C LTR MaLR -366 101 1 493 259 70 19 chr12 116555204 116555362 -27727127 + MIR SINE MIR 6 171 -91 207 122 73 0 chr12 116555439 116555480 -27727009 - L2 LINE L2 -71 3242 3199 1867 144 0 3 chr12 116555525 116555856 -27726633 + AluSx SINE Alu 1 330 0 1521 148 44 30 chr12 116556409 116556707 -27725782 + L1MB7 LINE L1 5877 6178 -6 2147 195 97 24 chr12 116557536 116558029 -27724460 + MLT1F LTR MaLR 7 535 -7 689 263 92 5 chr12 116558255 116558472 -27724017 + MIR SINE MIR 10 245 -17 190 219 47 62 chr12 116558562 116558626 -27723863 - MER5B DNA MER1_type -87 91 29 589 249 124 23 chr12 116558637 116558894 -27723595 + L1ME3A LINE L1 5647 5929 -241 2021 136 0 23 chr12 116559159 116559461 -27723028 + AluJb SINE Alu 1 295 -17 1219 122 0 0 chr12 116559468 116559632 -27722857 + AluJb SINE Alu 132 295 -17 245 271 43 14 chr12 116559788 116559858 -27722631 + MARNA DNA Mariner 466 537 -49 2606 53 0 0 chr12 116559996 116560300 -27722189 - AluY SINE Alu -7 304 1 573 288 5 11 chr12 116561045 116561229 -27721260 + Charlie8 DNA MER1_type 84 266 -2151 288 281 0 11 chr12 116561414 116561503 -27720986 - MIR SINE MIR -144 118 31 2133 115 0 7 chr12 116561726 116562038 -27720451 + AluSx SINE Alu 1 310 0 905 174 0 0 chr12 116562045 116562183 -27720306 + FRAM SINE Alu 14 151 -25 452 18 18 0 chr12 116562183 116562240 -27720249 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 438 249 6 62 chr12 116562255 116562432 -27720057 - MIR SINE MIR -61 201 35 477 213 80 33 chr12 116562552 116562702 -27719787 - MIR SINE MIR -98 164 8 730 180 0 0 chr12 116562869 116562991 -27719498 + AluJ SINE Alu 11 132 -180 2404 84 0 0 chr12 116563000 116563299 -27719190 + AluSx SINE Alu 1 299 -13 215 77 0 51 chr12 116563314 116563353 -27719136 + (GAAAA)n Simple_repeat Simple_repeat 5 41 0 1149 135 0 12 chr12 116563353 116563523 -27718966 + AluJ SINE Alu 130 297 -15 389 321 23 28 chr12 116564644 116564859 -27717630 + MIR SINE MIR 47 260 -2 510 275 54 40 chr12 116565256 116565478 -27717011 + MIR SINE MIR 30 254 -8 300 259 25 105 chr12 116566248 116566487 -27716002 - L2 LINE L2 -223 3049 2830 665 199 19 26 chr12 116566506 116566662 -27715827 - MER20 DNA MER1_type -43 176 22 290 196 210 73 chr12 116566670 116566889 -27715600 - LTR33 LTR ERVL -96 425 177 317 297 58 7 chr12 116570896 116571034 -27711455 + L1MC5 LINE L1 7751 7895 -66 504 309 24 5 chr12 116574483 116574690 -27707799 + MIR SINE MIR 37 247 -15 293 346 29 0 chr12 116575623 116575759 -27706730 - MER5A DNA MER1_type -48 141 2 2113 136 3 0 chr12 116576534 116576842 -27705647 - AluSx SINE Alu -3 309 1 2268 86 10 10 chr12 116576978 116577280 -27705209 + AluSx SINE Alu 1 302 -10 1352 221 155 60 chr12 116577564 116577617 -27704872 + L1MC4 LINE L1 6480 6527 -1515 2120 127 0 3 chr12 116577617 116577909 -27704580 + AluSx SINE Alu 1 291 -21 1352 221 155 60 chr12 116577909 116578062 -27704427 + L1MC4 LINE L1 6527 6664 -1378 222 118 0 0 chr12 116578062 116578096 -27704393 + (CA)n Simple_repeat Simple_repeat 2 35 0 1352 221 155 60 chr12 116578096 116578373 -27704116 + L1MC4 LINE L1 6664 7010 -1032 938 256 69 12 chr12 116578385 116578705 -27703784 + L1MC4 LINE L1 7380 7717 -325 237 303 114 23 chr12 116578716 116578848 -27703641 + L1MC4 LINE L1 7760 7903 -139 2529 61 0 7 chr12 116579352 116579648 -27702841 + AluY SINE Alu 1 294 -17 725 213 46 29 chr12 116580596 116580770 -27701719 + MER20 DNA MER1_type 1 177 -42 1568 140 0 0 chr12 116581533 116581754 -27700735 - AluSq SINE Alu -16 297 77 23 68 0 0 chr12 116581837 116581881 -27700608 + AT_rich Low_complexity Low_complexity 1 44 0 910 198 85 0 chr12 116581907 116582084 -27700405 + Charlie1a DNA MER1_type 5 196 -1259 * 3797 181 132 33 chr12 116582079 116583104 -27699385 + Charlie1a DNA MER1_type 328 1453 -2 231 196 54 0 chr12 116583108 116583164 -27699325 + L1ME4a LINE L1 5974 6032 -89 1544 146 64 58 chr12 116583178 116583473 -27699016 + AluSx SINE Alu 1 297 -15 309 191 48 67 chr12 116584576 116584681 -27697808 + MIR SINE MIR 41 143 -119 295 296 96 8 chr12 116584858 116584983 -27697506 + L2 LINE L2 3153 3288 -25 190 304 216 0 chr12 116585642 116585744 -27696745 - L2 LINE L2 -24 3248 3125 272 171 148 34 chr12 116586591 116586679 -27695810 - MER103 DNA DNA 0 166 69 738 208 47 58 chr12 116587114 116587485 -27695004 + L1MC5 LINE L1 7458 7941 -20 226 309 53 20 chr12 116588579 116588731 -27693758 + L1ME3A LINE L1 413 569 -5961 328 267 89 73 chr12 116588874 116589204 -27693285 + L1ME3A LINE L1 1723 1945 -4595 22 0 0 0 chr12 116589220 116589242 -27693247 + AT_rich Low_complexity Low_complexity 1 22 0 1201 224 135 83 chr12 116589262 116589909 -27692580 + L1ME3A LINE L1 4893 5505 -1059 2103 98 7 7 chr12 116589909 116590195 -27692294 + AluSx SINE Alu 9 294 -18 1201 224 135 83 chr12 116590195 116590319 -27692170 + L1ME3A LINE L1 5505 5621 -943 2240 85 0 17 chr12 116590319 116590614 -27691875 - AluSg SINE Alu -20 290 1 1625 174 3 49 chr12 116590619 116590923 -27691566 - AluJo SINE Alu -22 290 1 1201 224 135 83 chr12 116590923 116591660 -27690829 + L1ME3A LINE L1 5624 6487 -77 248 254 75 75 chr12 116592011 116592145 -27690344 - MER117 DNA MER1_type -26 171 38 658 237 121 0 chr12 116592173 116592388 -27690101 - MIR SINE MIR -21 241 1 1655 193 14 0 chr12 116593346 116593641 -27688848 - AluJo SINE Alu -13 299 1 2204 107 0 7 chr12 116594462 116594761 -27687728 + AluSg SINE Alu 1 297 -13 1995 141 0 0 chr12 116594984 116595275 -27687214 - AluY SINE Alu -20 291 1 2058 119 10 26 chr12 116595287 116595597 -27686892 - AluSx SINE Alu -7 305 1 2182 134 0 0 chr12 116595606 116595896 -27686593 - AluSx SINE Alu -22 290 1 707 214 48 0 chr12 116595925 116596070 -27686419 + L1MEd LINE L1 2160 2311 -4229 444 180 0 45 chr12 116596062 116596151 -27686338 + L1MD2 LINE L1 6037 6121 -238 * 699 170 61 14 chr12 116596165 116596312 -27686177 + L1MD2 LINE L1 6194 6347 -12 554 335 30 8 chr12 116597060 116597296 -27685193 - MIR SINE MIR 0 262 22 288 256 0 12 chr12 116597381 116597467 -27685022 + L1ME LINE L1 5668 5752 -369 361 250 27 18 chr12 116598277 116598389 -27684100 + MIR SINE MIR 82 194 -68 1909 155 13 7 chr12 116598510 116598813 -27683676 + AluJb SINE Alu 1 305 -7 913 195 66 9 chr12 116598944 116599170 -27683319 + L1MDa LINE L1 1936 2174 -4366 1468 232 52 31 chr12 116599182 116599357 -27683132 + L1MDa LINE L1 2218 2388 -4152 2018 105 52 7 chr12 116599357 116599643 -27682846 + AluSg SINE Alu 1 299 -11 1468 232 52 31 chr12 116599643 116600223 -27682266 + L1MDa LINE L1 2388 2985 -3555 22 35 0 0 chr12 116600278 116600307 -27682182 + AT_rich Low_complexity Low_complexity 1 29 0 1374 227 67 12 chr12 116600334 116600753 -27681736 + L1MDa LINE L1 2971 3412 -3128 * 4021 216 59 33 chr12 116600734 116601993 -27680496 + L1MDa LINE L1 4136 5426 -1114 1086 167 24 14 chr12 116602026 116602236 -27680253 + L1MD1 LINE L1 6031 6242 0 239 327 67 0 chr12 116602770 116602920 -27679569 + L2 LINE L2 2900 3059 -213 1682 238 95 76 chr12 116603088 116603741 -27678748 + L1M4 LINE L1 3693 4332 -1814 1246 138 85 11 chr12 116603741 116604001 -27678488 + L1MB2 LINE L1 5892 6170 -1 1682 238 95 76 chr12 116604001 116604159 -27678330 + L1M4 LINE L1 4332 4486 -1660 1877 166 0 0 chr12 116604159 116604455 -27678034 + AluJb SINE Alu 1 296 -16 1682 238 95 76 chr12 116604455 116604769 -27677720 + L1M4 LINE L1 4486 4840 -1306 1701 163 14 20 chr12 116604877 116605172 -27677317 - AluJb SINE Alu -17 295 3 201 231 0 0 chr12 116605408 116605447 -27677042 + MIR3 SINE MIR 121 159 -49 1140 75 0 0 chr12 116605983 116606130 -27676359 - AluSg/x SINE Alu -5 305 159 493 328 39 6 chr12 116606313 116606493 -27675996 - MIR SINE MIR -21 241 56 1432 185 20 17 chr12 116606658 116606950 -27675539 + AluJb SINE Alu 1 293 -19 2553 45 0 0 chr12 116607528 116607838 -27674651 + AluY SINE Alu 1 310 -1 208 269 0 60 chr12 116608087 116608154 -27674335 + MIR SINE MIR 83 145 -63 2123 122 3 0 chr12 116608160 116608471 -27674018 + AluSx SINE Alu 1 312 0 711 241 69 10 chr12 116608471 116608674 -27673815 + LTR33 LTR ERVL 1 215 -306 340 305 136 17 chr12 116608743 116608920 -27673569 + LTR33 LTR ERVL 324 521 0 187 347 31 20 chr12 116608999 116609097 -27673392 - MIR SINE MIR -82 180 82 567 257 131 10 chr12 116609269 116609475 -27673014 + MIR SINE MIR 14 244 -18 372 293 58 29 chr12 116610650 116610824 -27671665 + L2 LINE L2 3118 3296 -17 267 290 19 47 chr12 116610844 116610951 -27671538 - MIR SINE MIR -112 150 47 * 283 323 47 31 chr12 116610936 116611063 -27671426 + MIR SINE MIR 28 156 -106 278 250 52 31 chr12 116611831 116611927 -27670562 + MIR SINE MIR 51 148 -60 289 270 95 15 chr12 116612689 116612826 -27669663 - MARNA DNA Mariner -232 354 207 24 32 0 0 chr12 116614254 116614285 -27668204 + AT_rich Low_complexity Low_complexity 1 31 0 515 267 94 40 chr12 116616244 116616446 -27666043 - MIR SINE MIR -30 232 20 294 308 206 0 chr12 116617240 116617386 -27665103 - MIR SINE MIR -3 259 84 27 29 0 0 chr12 116618101 116618135 -27664354 + AT_rich Low_complexity Low_complexity 1 34 0 180 325 105 35 chr12 116618445 116618559 -27663930 - MER5A DNA MER1_type -22 167 46 2065 112 3 0 chr12 116618702 116618998 -27663491 + AluSg SINE Alu 1 297 -13 183 261 0 22 chr12 116620201 116620247 -27662242 + MER5B DNA MER1_type 81 125 -53 416 277 46 15 chr12 116620282 116620412 -27662077 - MIR3 SINE MIR -71 137 4 654 230 0 0 chr12 116620916 116621055 -27661434 + MIR SINE MIR 80 218 -44 1658 149 0 96 chr12 116621069 116621161 -27661328 + AluJo SINE Alu 1 100 -212 4108 117 17 8 chr12 116621161 116621758 -27660731 + LTR43 LTR ERV1 1 602 0 1658 149 0 96 chr12 116621758 116622008 -27660481 + AluJo SINE Alu 100 310 -2 559 271 119 49 chr12 116622086 116622315 -27660174 - MIR SINE MIR -18 244 3 2857 152 14 39 chr12 116622344 116622687 -27659802 - Tigger1 DNA MER2_type 0 2418 2091 2051 101 29 16 chr12 116622687 116622995 -27659494 - AluSx SINE Alu 0 312 1 2857 152 14 39 chr12 116622995 116623163 -27659326 - Tigger1 DNA MER2_type -327 2091 1920 536 147 57 19 chr12 116623164 116623321 -27659168 + CT-rich Low_complexity Low_complexity 2 164 0 1937 158 3 0 chr12 116623333 116623643 -27658846 - AluSx SINE Alu -1 311 1 885 135 232 0 chr12 116623644 116623829 -27658660 - Tigger1 DNA MER2_type -494 1924 1697 2005 108 0 0 chr12 116623831 116624108 -27658381 - AluSx SINE Alu -35 277 1 834 158 0 8 chr12 116624116 116624249 -27658240 - FLAM_C SINE Alu -11 132 1 5077 140 70 14 chr12 116624249 116624572 -27657917 - Tigger1 DNA MER2_type -1442 976 672 2309 98 0 0 chr12 116624572 116624877 -27657612 - AluSg1 SINE Alu -4 305 1 5077 140 70 14 chr12 116624877 116625458 -27657031 - Tigger1 DNA MER2_type -1746 672 22 223 254 0 17 chr12 116625466 116625525 -27656964 + (CTA)n Simple_repeat Simple_repeat 1 58 0 748 287 9 9 chr12 116626092 116626308 -27656181 + MIR SINE MIR 46 261 -1 872 164 0 16 chr12 116626317 116626500 -27655989 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 923 238 129 60 chr12 116626553 116626734 -27655755 + MLT1B LTR MaLR 1 168 -222 1581 178 35 0 chr12 116626734 116627020 -27655469 + AluJo SINE Alu 14 309 -3 923 238 129 60 chr12 116627020 116627203 -27655286 + MLT1B LTR MaLR 168 390 0 537 125 0 0 chr12 116627203 116627283 -27655206 + (CAT)n Simple_repeat Simple_repeat 2 81 0 789 190 0 0 chr12 116627285 116627464 -27655025 + (CCA)n Simple_repeat Simple_repeat 2 180 0 504 246 0 0 chr12 116627502 116627677 -27654812 + (CCA)n Simple_repeat Simple_repeat 2 176 0 512 235 0 6 chr12 116627690 116628037 -27654452 + (CCA)n Simple_repeat Simple_repeat 1 344 0 327 314 25 17 chr12 116628040 116628158 -27654331 + L1M4 LINE L1 4117 4235 -1911 1802 167 0 16 chr12 116628550 116628856 -27653633 + AluJo SINE Alu 1 301 -11 301 292 46 64 chr12 116628892 116628936 -27653553 - L1MC/D LINE L1 -2034 5774 5731 2019 148 0 0 chr12 116628936 116629247 -27653242 - AluSx SINE Alu -1 311 1 301 292 46 64 chr12 116629247 116629421 -27653068 - L1MC/D LINE L1 -2077 5731 5560 359 276 66 66 chr12 116629577 116629773 -27652716 + L3b LINE CR1 1304 1499 -84 2062 131 3 0 chr12 116629823 116630120 -27652369 - AluJb SINE Alu -14 298 1 251 326 0 11 chr12 116630255 116630344 -27652145 - MIR SINE MIR -82 126 39 255 93 0 0 chr12 116630805 116630848 -27651641 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 634 279 74 0 chr12 116630905 116631095 -27651394 + MIR SINE MIR 51 254 -8 199 130 0 130 chr12 116631297 116631351 -27651138 - MIR SINE MIR -9 253 207 552 271 131 10 chr12 116632355 116632554 -27649935 - MIR SINE MIR -37 225 3 197 247 178 0 chr12 116633271 116633344 -27649145 - MER5B DNA MER1_type -4 174 89 441 248 23 23 chr12 116633417 116633546 -27648943 + MIR SINE MIR 70 198 -64 1632 198 23 59 chr12 116633552 116633991 -27648498 + L1ME1 LINE L1 5694 6116 -50 2062 124 0 0 chr12 116633991 116634342 -27648147 - AluSc SINE Alu 0 309 1 1933 123 13 28 chr12 116634364 116634681 -27647808 - AluJb SINE Alu 0 312 1 581 156 117 62 chr12 116634691 116634819 -27647670 - AluJb SINE Alu -176 136 2 334 176 29 0 chr12 116634819 116634887 -27647602 + L1MA10 LINE L1 6264 6333 -1 252 250 269 0 chr12 116634979 116635087 -27647402 + L2 LINE L2 3164 3300 -13 589 256 56 28 chr12 116635385 116635565 -27646924 + MIR SINE MIR 20 204 -58 280 362 21 0 chr12 116635638 116635732 -27646757 - L2 LINE L2 -26 3287 3192 207 329 25 0 chr12 116635724 116635803 -27646686 - MER5A DNA MER1_type -43 146 66 * 694 229 23 0 chr12 116635803 116635934 -27646555 - FLAM_C SINE Alu -8 135 2 1688 129 50 7 chr12 116635946 116636103 -27646386 - AluJo SINE Alu -22 290 114 315 0 0 0 chr12 116636103 116636138 -27646351 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1688 129 50 7 chr12 116636138 116636258 -27646231 - AluJo SINE Alu -198 114 1 233 178 22 0 chr12 116636258 116636303 -27646186 + MER5B DNA MER1_type 114 159 -19 416 232 30 0 chr12 116636333 116636432 -27646057 - MIR SINE MIR -58 150 49 837 252 97 0 chr12 116637096 116637334 -27645155 + MIR SINE MIR 2 262 0 355 242 0 83 chr12 116637371 116637528 -27644961 - L2 LINE L2 -214 3058 2915 261 184 140 23 chr12 116638340 116638431 -27644058 - MIR SINE MIR -92 116 22 1963 75 37 41 chr12 116639189 116639483 -27643006 + AluSx SINE Alu 1 293 -19 729 163 23 8 chr12 116639870 116639999 -27642490 - FLAM_C SINE Alu -2 131 1 22 0 0 0 chr12 116640712 116640734 -27641755 + GC_rich Low_complexity Low_complexity 1 22 0 335 328 47 0 chr12 116641335 116641463 -27641026 + L2 LINE L2 3133 3266 -6 504 285 30 6 chr12 116641478 116641643 -27640846 - MIR SINE MIR 0 262 94 2193 102 0 7 chr12 116641937 116642242 -27640247 + AluSx SINE Alu 1 303 -9 264 300 67 0 chr12 116642765 116642855 -27639634 - MIR SINE MIR -73 135 40 1828 158 10 3 chr12 116643048 116643358 -27639131 + AluJb SINE Alu 1 312 0 1119 128 128 5 chr12 116643435 116643631 -27638858 + AluJo SINE Alu 1 220 -92 238 180 0 20 chr12 116643631 116643681 -27638808 + Alu SINE Alu 86 134 -168 667 203 85 1 chr12 116643757 116643936 -27638553 - MIR SINE MIR -37 225 33 288 207 25 0 chr12 116643942 116644063 -27638426 + (CA)n Simple_repeat Simple_repeat 2 125 0 583 186 23 8 chr12 116644079 116644484 -27638005 + (CA)n Simple_repeat Simple_repeat 1 411 0 283 269 186 36 chr12 116644744 116644911 -27637578 + MIR SINE MIR 44 235 -27 515 132 11 0 chr12 116645136 116645227 -27637262 + (CA)n Simple_repeat Simple_repeat 2 93 0 269 175 48 0 chr12 116645408 116645471 -27637018 + MIR SINE MIR 81 146 -62 240 305 38 9 chr12 116645575 116645680 -27636809 - MIR3 SINE MIR -53 155 48 427 267 52 0 chr12 116645714 116645830 -27636659 + MIR SINE MIR 69 190 -72 180 0 0 0 chr12 116646233 116646253 -27636236 + (CA)n Simple_repeat Simple_repeat 1 20 0 270 212 45 23 chr12 116646264 116646396 -27636093 + (CA)n Simple_repeat Simple_repeat 2 136 0 200 151 0 38 chr12 116646861 116646914 -27635575 + CT-rich Low_complexity Low_complexity 1 51 0 207 270 135 0 chr12 116647339 116647428 -27635061 + MIR3 SINE MIR 104 204 -4 251 301 58 0 chr12 116647474 116647577 -27634912 - MIR SINE MIR -117 145 37 300 27 0 0 chr12 116647611 116647648 -27634841 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 223 342 115 48 chr12 116647650 116648068 -27634421 - L2 LINE L2 -14 3258 2813 201 333 69 0 chr12 116648868 116648970 -27633519 - MIR SINE MIR -117 145 37 315 0 0 0 chr12 116649004 116649039 -27633450 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 206 97 0 0 chr12 116649101 116649132 -27633357 + MIR SINE MIR 117 147 -115 1691 215 48 44 chr12 116649233 116649655 -27632834 - MLT1D LTR MaLR -5 500 74 1511 191 17 7 chr12 116649655 116649948 -27632541 + AluJo SINE Alu 1 296 -16 1691 215 48 44 chr12 116649948 116650022 -27632467 - MLT1D LTR MaLR -431 74 2 207 217 33 50 chr12 116650098 116650158 -27632331 + L2 LINE L2 3214 3272 0 543 13 13 26 chr12 116650376 116650454 -27632035 + (CA)n Simple_repeat Simple_repeat 2 78 0 267 310 145 7 chr12 116650535 116650680 -27631809 + MIR3 SINE MIR 42 206 -2 1024 157 23 6 chr12 116650738 116650910 -27631579 - AluJb SINE Alu -17 295 121 195 332 120 34 chr12 116650959 116651308 -27631181 - L2 LINE L2 -13 3300 2922 354 231 99 0 chr12 116651385 116651476 -27631013 + L2 LINE L2 3214 3313 0 483 83 0 0 chr12 116651512 116651584 -27630905 - L1PA5 LINE L1 0 6154 6083 544 55 55 0 chr12 116651586 116651659 -27630830 + L1PA6 LINE L1 5903 5979 -175 220 316 0 0 chr12 116652396 116652453 -27630036 + MIR SINE MIR 83 139 -123 389 262 29 0 chr12 116652462 116652565 -27629924 - L2 LINE L2 -1 3271 3166 * 441 275 83 89 chr12 116652558 116652882 -27629607 + L2 LINE L2 2933 3254 -18 236 245 0 0 chr12 116652894 116652947 -27629542 - MIR3 SINE MIR -50 158 106 481 324 66 48 chr12 116652993 116653388 -27629101 - L2 LINE L2 -5 3308 2907 193 291 165 0 chr12 116653507 116653586 -27628903 + MIR3 SINE MIR 113 204 -4 1644 197 125 49 chr12 116653634 116654049 -27628440 + L1ME2 LINE L1 5514 5979 -185 1564 168 35 3 chr12 116654049 116654335 -27628154 + AluJo SINE Alu 1 295 -17 1644 197 125 49 chr12 116654335 116654446 -27628043 + L1ME2 LINE L1 5979 6080 -84 310 262 55 12 chr12 116654450 116654614 -27627875 + (TTGG)n Simple_repeat Simple_repeat 3 173 0 * 411 264 0 39 chr12 116654556 116654929 -27627560 + (TGGG)n Simple_repeat Simple_repeat 1 358 0 306 256 12 61 chr12 116654936 116655100 -27627389 + (TTAG)n Simple_repeat Simple_repeat 4 159 0 * 435 211 22 65 chr12 116654978 116655163 -27627326 + (TTGG)n Simple_repeat Simple_repeat 2 178 0 269 230 126 0 chr12 116655164 116655251 -27627238 + L1ME3 LINE L1 6063 6160 -2 466 175 19 44 chr12 116655797 116655957 -27626532 + C-rich Low_complexity Low_complexity 5 160 0 219 204 0 0 chr12 116655953 116656004 -27626485 + CT-rich Low_complexity Low_complexity 1 51 0 232 231 165 33 chr12 116655970 116656083 -27626406 - L2 LINE L2 -1 3312 3210 1385 153 0 0 chr12 116656083 116656285 -27626204 + AluJb SINE Alu 1 202 -110 249 108 0 0 chr12 116656306 116656343 -27626146 + (A)n Simple_repeat Simple_repeat 1 37 0 1740 163 40 0 chr12 116656353 116656632 -27625857 + AluJb SINE Alu 1 313 0 187 43 0 0 chr12 116656632 116656655 -27625834 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 333 324 51 0 chr12 116656788 116656966 -27625523 - L2 LINE L2 -293 3020 2834 469 195 131 89 chr12 116657195 116657431 -27625058 + AluJb SINE Alu 67 312 0 402 240 83 16 chr12 116657740 116657861 -27624628 + MIR SINE MIR 64 192 -70 2445 84 0 0 chr12 116657941 116658240 -27624249 - AluSx SINE Alu -13 299 1 477 273 129 0 chr12 116658741 116658935 -27623554 - MIR SINE MIR -10 252 34 605 258 73 0 chr12 116659234 116659412 -27623077 - L2 LINE L2 -260 3053 2863 916 146 168 0 chr12 116660111 116660296 -27622193 - MER20 DNA MER1_type -2 217 2 431 219 31 16 chr12 116660381 116660509 -27621980 - L1ME4a LINE L1 -28 6093 5964 578 229 28 7 chr12 116660616 116660760 -27621729 - MIR SINE MIR -5 257 111 210 250 167 21 chr12 116660895 116660991 -27621498 - L2 LINE L2 -8 3264 3155 2222 108 0 7 chr12 116661255 116661550 -27620939 + AluSx SINE Alu 10 302 -10 1549 146 23 31 chr12 116661853 116662114 -27620375 - AluJo SINE Alu -42 270 12 210 352 46 0 chr12 116662544 116662652 -27619837 - MIR SINE MIR -61 147 35 542 217 7 36 chr12 116662907 116663045 -27619444 + MIR SINE MIR 39 172 -90 180 152 0 0 chr12 116663881 116663914 -27618575 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 3178 203 45 53 chr12 116663915 116664161 -27618328 - L1ME2 LINE L1 -10 6154 5908 1945 117 7 24 chr12 116664161 116664451 -27618038 + AluJo SINE Alu 12 296 -16 3178 203 45 53 chr12 116664451 116664979 -27617510 - L1ME2 LINE L1 -256 5908 5386 260 315 141 26 chr12 116664980 116665320 -27617169 + L2 LINE L2 2288 2666 -648 192 308 0 44 chr12 116665355 116665446 -27617043 + L2 LINE L2 2933 3019 -253 435 130 0 0 chr12 116665602 116665671 -27616818 - AluS SINE Alu -227 86 18 420 345 41 18 chr12 116665948 116666119 -27616370 + MIR SINE MIR 74 248 -14 424 224 143 12 chr12 116666359 116666520 -27615969 + MIR SINE MIR 1 182 -80 641 199 98 9 chr12 116666641 116666973 -27615516 - MER63 DNA MER1_type 0 1060 1 2215 141 0 3 chr12 116667783 116668096 -27614393 - AluJb SINE Alu 0 312 1 2418 169 80 90 chr12 116668276 116668973 -27613516 + LTR8 LTR ERV1 1 690 -1 515 172 54 0 chr12 116669041 116669134 -27613355 + MER81 DNA DNA 17 114 0 909 171 51 60 chr12 116669144 116669360 -27613129 + MER58A DNA MER1_type 1 214 -10 2039 125 9 154 chr12 116669521 116669613 -27612876 + MER31A LTR ERV1 5 109 -376 2452 76 7 0 chr12 116669613 116669915 -27612574 + AluSp SINE Alu 1 304 -9 2039 125 9 154 chr12 116669915 116670366 -27612123 + MER31A LTR ERV1 109 468 -17 2357 100 0 13 chr12 116670366 116670667 -27611822 - AluSx SINE Alu -15 297 1 2039 125 9 154 chr12 116670667 116670680 -27611809 + MER31A LTR ERV1 468 481 -4 196 214 243 0 chr12 116671049 116671119 -27611370 - L2 LINE L2 -2 3311 3225 2277 113 7 0 chr12 116673462 116673763 -27608726 - AluSx SINE Alu -9 303 1 268 353 60 0 chr12 116674138 116674254 -27608235 + MIR SINE MIR 134 256 -6 2404 106 0 3 chr12 116674899 116675211 -27607278 - AluSx SINE Alu -1 311 1 1846 163 7 21 chr12 116675287 116675576 -27606913 - AluJo SINE Alu -27 285 1 2103 139 3 0 chr12 116675598 116675893 -27606596 + AluSq SINE Alu 1 296 -17 426 244 8 41 chr12 116675928 116676051 -27606438 - MIR3 SINE MIR -41 167 49 734 285 16 29 chr12 116676223 116676435 -27606054 + MIR SINE MIR 9 219 -43 1910 155 3 16 chr12 116676435 116676567 -27605922 + AluJb SINE Alu 5 137 -175 1989 133 3 37 chr12 116676567 116676889 -27605600 + AluJb SINE Alu 1 311 -1 1910 155 3 16 chr12 116676889 116677060 -27605429 + AluJb SINE Alu 137 304 -8 734 285 16 29 chr12 116677060 116677093 -27605396 + MIR SINE MIR 219 251 -11 414 0 0 0 chr12 116677094 116677140 -27605349 + (CA)n Simple_repeat Simple_repeat 2 47 0 464 206 59 43 chr12 116677583 116677751 -27604738 + MIR SINE MIR 18 193 -67 316 207 0 92 chr12 116678014 116678101 -27604388 - MER81 DNA DNA -35 79 1 1889 142 17 0 chr12 116678204 116678492 -27603997 + AluJo SINE Alu 1 293 -19 180 77 0 0 chr12 116679320 116679346 -27603143 + (CCCTG)n Simple_repeat Simple_repeat 1 26 0 488 253 13 23 chr12 116679346 116679495 -27602994 + MIR SINE MIR 35 181 -62 400 207 56 117 chr12 116679945 116680034 -27602455 - MER106A DNA MER1_type -6 230 156 1765 158 48 3 chr12 116680034 116680325 -27602164 - AluJo SINE Alu -8 304 1 400 207 56 117 chr12 116680325 116680414 -27602075 - MER106A DNA MER1_type -80 156 63 221 234 0 0 chr12 116680775 116680822 -27601667 + MIR SINE MIR 98 144 -118 378 42 0 0 chr12 116681165 116681213 -27601276 + (TG)n Simple_repeat Simple_repeat 2 49 0 2020 155 0 3 chr12 116681295 116681591 -27600898 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 116681591 116681619 -27600870 + AT_rich Low_complexity Low_complexity 1 28 0 281 217 261 0 chr12 116681812 116681904 -27600585 + MIR3 SINE MIR 56 171 -37 1903 167 13 0 chr12 116681998 116682297 -27600192 + AluJo SINE Alu 1 303 -9 2407 72 7 13 chr12 116683676 116683982 -27598507 - AluSp SINE Alu -9 304 1 958 210 150 9 chr12 116684283 116684516 -27597973 + MER58B DNA MER1_type 28 293 -48 520 291 170 0 chr12 116684532 116684738 -27597751 - MIR SINE MIR -10 252 12 950 152 18 24 chr12 116684830 116684994 -27597495 - FRAM SINE Alu -14 162 1 2319 122 0 0 chr12 116685561 116685872 -27596617 - AluSx SINE Alu -1 311 1 735 264 26 5 chr12 116685872 116686065 -27596424 - MIR SINE MIR -64 198 2 416 314 104 50 chr12 116686560 116686917 -27595572 + Tigger8 DNA MER2_type 199 574 -92 234 273 176 30 chr12 116688132 116688297 -27594192 - L2 LINE L2 0 3313 3125 391 280 135 5 chr12 116688425 116688550 -27593939 - L2 LINE L2 -458 2856 2749 1388 197 93 0 chr12 116688550 116688860 -27593629 - MER58B DNA MER1_type 0 341 3 391 280 135 5 chr12 116688860 116688941 -27593548 - L2 LINE L2 -565 2749 2623 1045 207 45 123 chr12 116688941 116689158 -27593331 + MLT2D LTR ERVL 1 168 -246 2389 92 3 7 chr12 116689158 116689461 -27593028 + AluSx SINE Alu 4 305 -7 1045 207 45 123 chr12 116689461 116689683 -27592806 + MLT2D LTR ERVL 168 406 -8 239 291 163 7 chr12 116689696 116689837 -27592652 - L2 LINE L2 -703 2611 2449 323 325 49 8 chr12 116692561 116692684 -27589805 - L1ME LINE L1 -438 5683 5556 223 317 79 20 chr12 116693576 116693677 -27588812 - MIR SINE MIR -109 153 47 180 77 0 0 chr12 116694006 116694032 -27588457 + (A)n Simple_repeat Simple_repeat 1 26 0 1794 158 44 10 chr12 116698956 116699254 -27583235 - AluJb SINE Alu -4 308 1 514 295 83 5 chr12 116699313 116699506 -27582983 + MIR SINE MIR 41 248 -14 1182 132 42 0 chr12 116699725 116699914 -27582575 - AluSx SINE Alu -3 307 111 1274 89 0 0 chr12 116700654 116700812 -27581677 + AluSg/x SINE Alu 137 294 -18 219 69 0 0 chr12 116700818 116700847 -27581642 + (T)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr12 116703228 116703254 -27579235 + AT_rich Low_complexity Low_complexity 1 26 0 2075 125 7 13 chr12 116703470 116703775 -27578714 - AluSx SINE Alu -4 308 6 261 191 145 61 chr12 116703801 116703932 -27578557 - L1ME4a LINE L1 -4 6117 5976 9629 41 5 197 chr12 116704127 116705841 -27576648 + SVA Other Other 1 1386 0 22 0 0 0 chr12 116705841 116705863 -27576626 + AT_rich Low_complexity Low_complexity 1 22 0 243 333 83 0 chr12 116706318 116706438 -27576051 - MIR SINE MIR -97 165 36 258 56 0 0 chr12 116706963 116706999 -27575490 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1029 90 0 0 chr12 116706999 116707121 -27575368 - AluSx SINE Alu -190 122 1 258 32 0 0 chr12 116707794 116707825 -27574664 + (GA)n Simple_repeat Simple_repeat 2 32 0 376 227 100 27 chr12 116708197 116708347 -27574142 - L1ME4a LINE L1 -52 6069 5909 2502 75 3 0 chr12 116708945 116709252 -27573237 + AluSp SINE Alu 1 308 -5 846 193 12 1 chr12 116709804 116709974 -27572515 - L1ME1 LINE L1 -1 6183 6007 765 275 128 12 chr12 116710031 116710376 -27572113 + L1ME4a LINE L1 5736 6120 -1 989 122 0 0 chr12 116711108 116711247 -27571242 - AluSg/x SINE Alu -3 309 171 4758 171 34 23 chr12 116711581 116712638 -27569851 + L1MB7 LINE L1 5119 6184 0 21 0 0 0 chr12 116714035 116714056 -27568433 + AT_rich Low_complexity Low_complexity 1 21 0 311 294 189 40 chr12 116714537 116714765 -27567724 + MIR SINE MIR 1 262 0 282 310 70 9 chr12 116715443 116715606 -27566883 + MIR SINE MIR 30 201 -61 477 203 137 76 chr12 116715656 116715853 -27566636 + MIR SINE MIR 20 228 -34 24 32 0 0 chr12 116716264 116716295 -27566194 + AT_rich Low_complexity Low_complexity 1 31 0 254 291 184 0 chr12 116716384 116716487 -27566002 + FLAM_C SINE Alu 9 130 -3 267 208 0 0 chr12 116717223 116717271 -27565218 + U7 snRNA snRNA 1 48 -15 181 246 0 62 chr12 116718228 116718293 -27564196 - MIR SINE MIR -99 163 103 217 282 0 53 chr12 116719669 116719771 -27562718 + A-rich Low_complexity Low_complexity 1 96 -28 180 0 0 0 chr12 116719771 116719791 -27562698 + (TAA)n Simple_repeat Simple_repeat 2 21 0 217 282 0 53 chr12 116719791 116719819 -27562670 + A-rich Low_complexity Low_complexity 96 124 0 1735 155 38 10 chr12 116719826 116720116 -27562373 + AluJo SINE Alu 1 298 -14 441 320 75 50 chr12 116720126 116720532 -27561957 + HAL1b LINE L1 80 504 -844 1689 154 3 18 chr12 116720532 116720838 -27561651 - AluJb SINE Alu 0 302 1 441 320 75 50 chr12 116720838 116720951 -27561538 + HAL1b LINE L1 504 613 -735 13444 117 73 21 chr12 116721377 116722530 -27559959 + Tigger1 DNA MER2_type 1 1093 -1325 1183 38 0 0 chr12 116722530 116722686 -27559803 + L1PA3 LINE L1 6019 6174 0 13444 117 73 21 chr12 116722686 116723056 -27559433 + Tigger1 DNA MER2_type 1093 1442 -976 2125 79 48 17 chr12 116723056 116723348 -27559141 + AluSc SINE Alu 1 301 -8 13444 117 73 21 chr12 116723348 116723996 -27558493 + Tigger1 DNA MER2_type 1442 2286 -132 2196 207 47 87 chr12 116724000 116724849 -27557640 + L1MC5 LINE L1 6717 7531 -430 296 224 49 70 chr12 116724939 116725082 -27557407 + L1ME3A LINE L1 5963 6102 -68 2307 105 0 0 chr12 116725270 116725564 -27556925 + AluSx SINE Alu 6 299 -13 26 50 0 0 chr12 116725790 116725830 -27556659 + AT_rich Low_complexity Low_complexity 1 40 0 2356 78 0 0 chr12 116726534 116726816 -27555673 + AluSx SINE Alu 23 304 -8 21 0 0 0 chr12 116727492 116727513 -27554976 + AT_rich Low_complexity Low_complexity 1 21 0 2345 80 30 0 chr12 116727615 116727967 -27554522 + AluSc SINE Alu 1 361 0 565 270 28 39 chr12 116728505 116728683 -27553806 + MIR SINE MIR 17 192 -70 542 310 94 49 chr12 116728832 116729077 -27553412 - L2 LINE L2 -10 3262 3007 602 313 33 5 chr12 116729282 116729493 -27552996 + MIR SINE MIR 36 252 -10 209 195 24 0 chr12 116729765 116729806 -27552683 + CT-rich Low_complexity Low_complexity 2 43 0 728 188 120 0 chr12 116729807 116729940 -27552549 - FAM SINE Alu -36 149 1 557 284 63 54 chr12 116729997 116730482 -27552007 + L1MC/D LINE L1 1230 1702 -874 522 288 93 48 chr12 116731171 116731914 -27550575 + L1MC/D LINE L1 2407 3190 -3025 2243 126 0 3 chr12 116731914 116732223 -27550266 + AluSg SINE Alu 2 309 -1 522 288 93 48 chr12 116732223 116732278 -27550211 + L1MC/D LINE L1 3190 3241 -2974 479 274 97 36 chr12 116732552 116732800 -27549689 + L1MC/D LINE L1 3578 3840 -2375 714 301 92 28 chr12 116732876 116733311 -27549178 + L1MC/D LINE L1 5367 5829 -2048 418 258 86 26 chr12 116734159 116734310 -27548179 - MIR SINE MIR 0 262 103 1381 119 16 0 chr12 116736084 116736269 -27546220 + AluJo SINE Alu 102 289 -23 2082 110 11 0 chr12 116736278 116736559 -27545930 + AluSx SINE Alu 1 284 -28 28 29 0 0 chr12 116736559 116736594 -27545895 + AT_rich Low_complexity Low_complexity 1 35 0 2224 109 3 0 chr12 116737518 116737812 -27544677 - AluSx SINE Alu -17 295 1 180 111 0 0 chr12 116739991 116740018 -27542471 + (CAAGC)n Simple_repeat Simple_repeat 2 28 0 4076 243 47 34 chr12 116740752 116741838 -27540651 + L1MDa LINE L1 11 1110 -5430 290 316 100 36 chr12 116741965 116742215 -27540274 + L2 LINE L2 2710 2975 -339 774 261 0 0 chr12 116742316 116742534 -27539955 + L1MDa LINE L1 3209 3426 -3114 1727 126 0 0 chr12 116742546 116742776 -27539713 + AluSq SINE Alu 1 230 -83 780 215 43 9 chr12 116742859 116743092 -27539397 + L1MDa LINE L1 3432 3672 -2868 196 345 44 53 chr12 116743496 116743609 -27538880 + MIR SINE MIR 21 132 -76 183 289 99 33 chr12 116743662 116743783 -27538706 - MIR SINE MIR -37 225 97 357 176 0 0 chr12 116744008 116744082 -27538407 + GA-rich Low_complexity Low_complexity 2 75 0 285 273 20 10 chr12 116744101 116744200 -27538289 + GA-rich Low_complexity Low_complexity 1 100 0 385 252 15 10 chr12 116744966 116745087 -27537402 - MIR SINE MIR -66 142 38 1309 161 3 125 chr12 116745093 116745429 -27537060 - AluJo SINE Alu -17 295 1 2247 102 10 0 chr12 116746634 116746763 -27535726 + AluSx SINE Alu 1 127 -185 2228 104 14 3 chr12 116746763 116747060 -27535429 + AluSg SINE Alu 1 300 -10 2247 102 10 0 chr12 116747060 116747225 -27535264 + AluSx SINE Alu 127 298 -14 2396 89 0 0 chr12 116750804 116751107 -27531382 - AluSx SINE Alu -9 303 1 22 0 0 0 chr12 116751162 116751184 -27531305 + AT_rich Low_complexity Low_complexity 1 22 0 2024 116 45 0 chr12 116752022 116752314 -27530175 + AluSg SINE Alu 1 305 -5 2116 171 112 7 chr12 116752934 116753361 -27529128 - MLT1F LTR MaLR 0 542 71 539 186 52 122 chr12 116753736 116753908 -27528581 + MER105 DNA DNA 3 162 -42 2456 68 3 0 chr12 116756421 116756716 -27525773 - AluSx SINE Alu -16 296 1 339 352 7 14 chr12 116756741 116756883 -27525606 - MIR3 SINE MIR -63 145 5 255 276 0 11 chr12 116759613 116759700 -27522789 - MIR3 SINE MIR 0 208 123 358 273 100 78 chr12 116761361 116761772 -27520717 + HAL1 LINE L1 28 447 -2060 286 283 40 10 chr12 116761925 116762024 -27520465 + HAL1 LINE L1 747 848 -1659 2162 108 14 0 chr12 116762207 116762495 -27519994 + AluSg SINE Alu 3 294 -16 280 319 64 48 chr12 116762780 116762968 -27519521 + MIR SINE MIR 1 191 -71 349 245 163 0 chr12 116763091 116763189 -27519300 + MIR SINE MIR 41 154 -108 2081 104 66 0 chr12 116763206 116763495 -27518994 + AluSx SINE Alu 1 308 -4 7539 185 69 18 chr12 116763505 116763914 -27518575 + L1MB8 LINE L1 3506 3892 -2286 2215 129 0 0 chr12 116763914 116764224 -27518265 + AluSx SINE Alu 1 310 -2 7539 185 69 18 chr12 116764224 116764611 -27517878 + L1MB8 LINE L1 3892 4258 -1920 2030 124 39 0 chr12 116764611 116764893 -27517596 - AluSx SINE Alu -19 293 1 7539 185 69 18 chr12 116764893 116766472 -27516017 + L1MB8 LINE L1 4258 5754 -424 2436 90 0 0 chr12 116766472 116766771 -27515718 - AluSx SINE Alu -13 299 1 1499 183 38 17 chr12 116766773 116767062 -27515427 - AluJo SINE Alu -15 297 3 7539 185 69 18 chr12 116767062 116767203 -27515286 + L1MB8 LINE L1 5754 6160 -18 548 57 0 0 chr12 116768329 116768399 -27514090 + MER41A LTR ERV1 399 468 -86 2479 82 3 0 chr12 116768566 116768871 -27513618 - AluSc SINE Alu -3 306 1 1717 184 0 22 chr12 116769091 116769406 -27513083 + AluJo SINE Alu 2 309 -3 2369 107 0 0 chr12 116769407 116769706 -27512783 + AluSx SINE Alu 1 299 -13 1958 136 17 7 chr12 116770300 116770602 -27511887 + AluSq SINE Alu 1 305 -8 774 172 0 0 chr12 116770709 116770831 -27511658 + AluJo SINE Alu 1 122 -180 651 115 124 26 chr12 116770831 116770944 -27511545 + AluJo SINE Alu 180 303 -9 367 261 89 76 chr12 116771893 116772118 -27510371 + Tigger8 DNA MER2_type 213 445 -221 2373 72 0 33 chr12 116772118 116772425 -27510064 + AluSc SINE Alu 1 297 -12 367 261 89 76 chr12 116772425 116772502 -27509987 + Tigger8 DNA MER2_type 445 519 -147 1749 124 85 7 chr12 116772509 116772791 -27509698 + AluJb SINE Alu 4 307 -5 718 238 0 41 chr12 116773071 116773243 -27509246 + AluJo SINE Alu 118 282 -30 225 0 0 0 chr12 116773248 116773273 -27509216 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2467 72 10 0 chr12 116773861 116774167 -27508322 + AluSc SINE Alu 1 309 0 22 0 0 0 chr12 116774305 116774327 -27508162 + AT_rich Low_complexity Low_complexity 1 22 0 486 254 57 53 chr12 116774885 116775094 -27507395 - L2 LINE L2 0 3313 3104 412 258 86 56 chr12 116775278 116775546 -27506943 - L2 LINE L2 -434 2880 2605 23 54 0 0 chr12 116775794 116775831 -27506658 + AT_rich Low_complexity Low_complexity 1 37 0 2318 111 0 13 chr12 116775945 116776081 -27506408 + AluSx SINE Alu 1 137 -175 2302 87 0 50 chr12 116776081 116776402 -27506087 + AluY SINE Alu 1 305 -6 2318 111 0 13 chr12 116776402 116776580 -27505909 + AluSx SINE Alu 137 311 -1 2024 133 0 3 chr12 116777912 116778198 -27504291 + AluJb SINE Alu 1 285 -27 180 125 0 0 chr12 116778198 116778230 -27504259 + (CA)n Simple_repeat Simple_repeat 1 32 0 2398 78 3 3 chr12 116778535 116778831 -27503658 - AluY SINE Alu -14 297 2 294 282 0 0 chr12 116778940 116779011 -27503478 - L2 LINE L2 0 3272 3202 231 231 20 16 chr12 116782428 116782498 -27499991 + MIR SINE MIR 86 158 -50 203 178 0 22 chr12 116783060 116783105 -27499384 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 472 311 31 21 chr12 116783401 116783614 -27498875 - MIR SINE MIR -43 219 6 265 105 0 0 chr12 116783810 116783876 -27498613 - AluSg SINE Alu 0 309 244 1918 110 8 4 chr12 116783877 116784141 -27498348 - AluSg SINE Alu -44 266 2 26 30 0 0 chr12 116784144 116784177 -27498312 + AT_rich Low_complexity Low_complexity 1 33 0 2055 64 0 38 chr12 116784184 116784450 -27498039 + AluY SINE Alu 40 295 -16 859 166 0 14 chr12 116784537 116784682 -27497807 + FLAM_C SINE Alu 1 143 0 1158 147 121 17 chr12 116785742 116786466 -27496023 + L1MB8 LINE L1 5131 6144 -34 993 114 60 12 chr12 116786466 116786632 -27495857 + L1MB8 LINE L1 6005 6178 0 1158 147 121 17 chr12 116786632 116786671 -27495818 + L1MB8 LINE L1 6144 6178 0 30 83 0 0 chr12 116789537 116789609 -27492880 + GC_rich Low_complexity Low_complexity 1 72 0 399 324 14 0 chr12 116790424 116790572 -27491917 + MIR3 SINE MIR 30 179 -29 369 184 40 0 chr12 116790768 116790844 -27491645 + MIR SINE MIR 95 173 -89 397 42 0 0 chr12 116790882 116790930 -27491559 - MADE1 DNA Mariner -26 54 7 213 206 32 16 chr12 116791111 116791174 -27491315 + MIR SINE MIR 184 247 -15 1895 142 0 14 chr12 116791185 116791480 -27491009 - AluJb SINE Alu -17 295 5 2619 38 0 0 chr12 116791614 116791904 -27490585 - AluY SINE Alu -21 290 1 434 243 80 75 chr12 116791961 116792061 -27490428 - MIR SINE MIR -8 254 156 1459 184 93 4 chr12 116792061 116792339 -27490150 - AluJo SINE Alu -9 303 1 434 243 80 75 chr12 116792339 116792477 -27490012 - MIR SINE MIR -106 156 15 423 304 15 83 chr12 116792504 116792778 -27489711 + MIR SINE MIR 2 255 -7 2167 96 22 26 chr12 116792799 116793112 -27489377 + AluSx SINE Alu 1 312 0 24 0 0 0 chr12 116793846 116793870 -27488619 + AT_rich Low_complexity Low_complexity 1 24 0 384 137 0 0 chr12 116794061 116794134 -27488355 - L1MD2 LINE L1 0 6359 6287 1097 123 0 13 chr12 116794134 116794288 -27488201 + AluSg/x SINE Alu 137 288 -24 282 56 0 0 chr12 116794288 116794324 -27488165 + (GA)n Simple_repeat Simple_repeat 1 36 0 844 152 8 0 chr12 116794333 116794458 -27488031 + AluJb SINE Alu 1 126 -186 4710 133 17 68 chr12 116794463 116795349 -27487140 - L1MC2 LINE L1 -50 6688 5756 2228 130 0 0 chr12 116795349 116795648 -27486841 - AluSx SINE Alu -13 299 1 4710 133 17 68 chr12 116795648 116795692 -27486797 - L1MC2 LINE L1 -982 5756 5711 2083 125 16 13 chr12 116795697 116796008 -27486481 - AluJo SINE Alu 0 312 1 6515 213 51 72 chr12 116796008 116796493 -27485996 - L1MC2 LINE L1 -1761 4779 4285 715 92 0 67 chr12 116796493 116796613 -27485876 + HY1 scRNA scRNA 1 112 0 6515 213 51 72 chr12 116796613 116796850 -27485639 - L1MC2 LINE L1 -2255 4285 4045 1890 176 10 0 chr12 116796850 116797157 -27485332 - AluJb SINE Alu -2 310 1 6515 213 51 72 chr12 116797157 116797209 -27485280 - L1MC2 LINE L1 -2495 4045 3993 2184 91 0 7 chr12 116797209 116797483 -27485006 - AluSg SINE Alu -38 272 1 6515 213 51 72 chr12 116797483 116797851 -27484638 - L1MC2 LINE L1 -2547 3993 3619 2219 105 7 3 chr12 116797851 116798156 -27484333 - AluSg1 SINE Alu -3 306 1 6515 213 51 72 chr12 116798156 116798387 -27484102 - L1MC2 LINE L1 -2921 3619 3385 2204 140 0 0 chr12 116798387 116798695 -27483794 - AluSx SINE Alu -4 308 1 6515 213 51 72 chr12 116798695 116799205 -27483284 - L1MC2 LINE L1 -3155 3385 2866 1989 135 47 7 chr12 116799205 116799502 -27482987 + AluSx SINE Alu 1 309 -3 6515 213 51 72 chr12 116799502 116799761 -27482728 - L1MC2 LINE L1 -3674 2866 2603 2301 99 10 0 chr12 116799761 116800063 -27482426 - AluSc SINE Alu -4 305 1 6515 213 51 72 chr12 116800063 116800166 -27482323 - L1MC2 LINE L1 -3937 2603 2499 1699 122 111 0 chr12 116800166 116800436 -27482053 - AluSx SINE Alu -12 300 1 6515 213 51 72 chr12 116800436 116800681 -27481808 - L1MC2 LINE L1 -4041 2499 2327 857 112 41 51 chr12 116800717 116800913 -27481576 + L1MDa LINE L1 1280 1473 -5067 663 244 0 0 chr12 116800936 116801104 -27481385 - L1MDa LINE L1 -3136 3404 3237 4007 141 58 47 chr12 116801119 116801492 -27480997 + L1MDa LINE L1 1468 1835 -4705 1987 170 0 0 chr12 116801492 116801792 -27480697 - AluJo SINE Alu -12 300 1 4007 141 58 47 chr12 116801792 116801956 -27480533 + L1MDa LINE L1 1835 1996 -4544 2281 112 13 0 chr12 116801956 116802259 -27480230 + AluSg SINE Alu 1 307 -3 4007 141 58 47 chr12 116802259 116802559 -27479930 + L1MDa LINE L1 1996 2316 -4224 200 130 22 0 chr12 116802559 116802605 -27479884 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 2983 217 65 27 chr12 116802626 116802874 -27479615 - L1MDa LINE L1 -5284 1256 1019 1467 140 45 64 chr12 116802874 116803042 -27479447 - AluJo SINE Alu -13 299 136 2371 91 0 0 chr12 116803042 116803338 -27479151 - AluSx SINE Alu -16 296 1 1467 140 45 64 chr12 116803338 116803434 -27479055 - AluJo SINE Alu -176 136 40 2983 217 65 27 chr12 116803434 116803919 -27478570 - L1MDa LINE L1 -5521 1019 495 358 290 24 0 chr12 116804030 116804154 -27478335 + MIR SINE MIR 38 164 -98 381 223 32 0 chr12 116804275 116804369 -27478120 - MIR SINE MIR -89 173 77 2111 95 44 27 chr12 116804533 116804827 -27477662 + AluSc SINE Alu 1 299 -10 845 95 103 16 chr12 116804829 116804955 -27477534 + AluJo SINE Alu 1 137 -175 561 130 61 9 chr12 116804956 116805071 -27477418 + L1MC3 LINE L1 7665 7785 0 1093 109 0 0 chr12 116805083 116805230 -27477259 + AluSp/q SINE Alu 167 313 0 546 99 0 0 chr12 116805251 116805322 -27477167 + AluJ/FLAM SINE Alu 2 72 -240 1171 258 45 21 chr12 116805322 116805766 -27476723 + MLT1H LTR MaLR 60 549 0 226 196 71 0 chr12 116805784 116805840 -27476649 + L1ME LINE L1 5601 5660 -461 1950 155 17 141 chr12 116805864 116806068 -27476421 + MER82 DNA MER2_type 2 230 -423 1851 161 7 3 chr12 116806068 116806354 -27476135 - AluJb SINE Alu -25 287 1 1950 155 17 141 chr12 116806354 116806396 -27476093 + MER82 DNA MER2_type 230 276 -377 2323 101 3 0 chr12 116806396 116806692 -27475797 + AluSp SINE Alu 1 297 -16 1950 155 17 141 chr12 116806692 116806945 -27475544 + MER82 DNA MER2_type 276 438 -215 288 149 0 0 chr12 116806945 116806992 -27475497 + MLT1A1 LTR MaLR 3 49 -316 1829 199 0 0 chr12 116806995 116807306 -27475183 + AluJb SINE Alu 1 311 -1 2227 164 72 14 chr12 116807320 116807734 -27474755 - MLT2B1 LTR ERVL -81 439 2 2281 112 3 0 chr12 116807735 116808030 -27474459 + AluSx SINE Alu 1 296 -16 1941 128 29 45 chr12 116808135 116808447 -27474042 - AluSg SINE Alu -3 307 1 1021 158 26 90 chr12 116808805 116809039 -27473450 + MER20 DNA MER1_type 1 219 0 491 196 9 0 chr12 116809073 116809180 -27473309 - MIR SINE MIR -43 219 112 2388 112 0 0 chr12 116809197 116809502 -27472987 + AluSx SINE Alu 1 305 -7 1808 159 0 30 chr12 116809575 116809876 -27472613 - AluJo SINE Alu -20 292 1 201 283 33 54 chr12 116810402 116810494 -27471995 - L2 LINE L2 -1 3271 3182 568 240 8 8 chr12 116810634 116810759 -27471730 + MIR SINE MIR 22 146 -116 2043 125 6 41 chr12 116810811 116810985 -27471504 - AluSx SINE Alu -4 308 148 2480 94 0 0 chr12 116810985 116811294 -27471195 - AluSq SINE Alu -1 312 4 2043 125 6 41 chr12 116811294 116811438 -27471051 - AluSx SINE Alu -164 148 1 273 183 48 115 chr12 116811655 116811759 -27470730 + MLT1A1 LTR MaLR 196 292 -257 450 169 32 106 chr12 116811785 116811974 -27470515 + MLT1H LTR MaLR 375 549 0 276 217 116 0 chr12 116811980 116812049 -27470440 - MIR SINE MIR -111 151 75 2125 124 3 16 chr12 116812628 116812943 -27469546 + AluSx SINE Alu 1 311 -1 811 265 60 56 chr12 116812953 116813141 -27469348 + MIR SINE MIR 12 203 -59 2554 67 3 0 chr12 116813141 116813438 -27469051 + AluSp SINE Alu 2 299 -14 811 265 60 56 chr12 116813438 116813498 -27468991 + MIR SINE MIR 203 261 -1 363 252 15 10 chr12 116813488 116813609 -27468880 - MIR SINE MIR -66 142 38 * 1411 161 3 122 chr12 116813615 116813950 -27468539 - AluJo SINE Alu -17 295 1 2370 96 0 0 chr12 116814153 116814444 -27468045 + AluSc SINE Alu 1 291 -18 394 258 65 39 chr12 116814538 116814693 -27467796 - MIR SINE MIR -44 218 60 448 222 25 118 chr12 116814746 116814877 -27467612 - MIR SINE MIR 0 262 120 1769 192 0 29 chr12 116814877 116815184 -27467305 + AluJo SINE Alu 1 298 -14 448 222 25 118 chr12 116815184 116815198 -27467291 - MIR SINE MIR -142 120 106 510 17 0 0 chr12 116815198 116815257 -27467232 + (CA)n Simple_repeat Simple_repeat 2 60 0 1874 160 9 31 chr12 116815266 116815585 -27466904 + AluJb SINE Alu 1 312 0 448 222 25 118 chr12 116815585 116815631 -27466858 - MIR SINE MIR -164 98 79 1172 98 6 37 chr12 116815651 116815815 -27466674 - AluSg/x SINE Alu -9 301 143 2147 138 0 19 chr12 116816155 116816334 -27466155 - AluSx SINE Alu 0 312 140 2514 73 0 7 chr12 116816334 116816635 -27465854 - AluSg SINE Alu -11 299 1 2147 138 0 19 chr12 116816635 116816773 -27465716 - AluSx SINE Alu -172 140 1 192 40 0 0 chr12 116816796 116816821 -27465668 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 782 121 9 0 chr12 116816823 116816939 -27465550 - FLAM_C SINE Alu -16 117 1 740 210 12 6 chr12 116817284 116817446 -27465043 + FRAM SINE Alu 1 163 -3 1980 164 0 6 chr12 116817502 116817814 -27464675 + AluJb SINE Alu 1 310 -2 1937 225 60 44 chr12 116817873 116818277 -27464212 - MLT1F LTR MaLR -1 541 145 2519 81 3 0 chr12 116818277 116818586 -27463903 - AluSp SINE Alu -3 310 1 1937 225 60 44 chr12 116818586 116818656 -27463833 - MLT1F LTR MaLR -397 145 56 1202 223 107 26 chr12 116818656 116819002 -27463487 - MLT1A2 LTR MaLR 0 374 1 1937 225 60 44 chr12 116819002 116819047 -27463442 - MLT1F LTR MaLR -486 56 13 463 276 96 6 chr12 116819054 116819210 -27463279 + L1ME LINE L1 5632 5801 -320 2336 120 3 0 chr12 116819438 116819746 -27462743 + AluSx SINE Alu 1 309 -3 2069 95 4 11 chr12 116819980 116820253 -27462236 + AluSg SINE Alu 1 271 -39 422 113 0 14 chr12 116820254 116820325 -27462164 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 2233 138 0 0 chr12 116820602 116820913 -27461576 - AluSx SINE Alu -1 311 1 559 299 27 10 chr12 116821111 116821329 -27461160 + MIR SINE MIR 1 224 -38 1604 200 0 3 chr12 116821329 116821639 -27460850 + AluY SINE Alu 2 310 -1 559 299 27 10 chr12 116821639 116821654 -27460835 + MIR SINE MIR 224 237 -25 406 267 0 9 chr12 116821763 116821868 -27460621 + MIR SINE MIR 83 186 -76 2060 115 32 0 chr12 116821929 116822208 -27460281 - AluJb SINE Alu -14 298 11 2507 63 0 0 chr12 116822901 116823208 -27459281 + AluSc SINE Alu 1 307 0 259 303 0 0 chr12 116823279 116823345 -27459144 - L2 LINE L2 0 3272 3207 722 194 62 0 chr12 116823439 116823599 -27458890 + MER3 DNA MER1_type 3 125 -84 231 149 21 0 chr12 116823608 116823655 -27458834 + (TTTAA)n Simple_repeat Simple_repeat 4 51 0 2302 86 3 20 chr12 116823890 116824194 -27458295 - AluSx SINE Alu -13 299 1 2290 90 7 23 chr12 116824200 116824510 -27457979 - AluSc SINE Alu -4 305 1 184 278 148 95 chr12 116824852 116824954 -27457535 + MIR SINE MIR 12 128 -134 2190 104 0 3 chr12 116824954 116825264 -27457225 - AluSx SINE Alu 0 312 1 184 278 148 95 chr12 116825264 116825330 -27457159 + MIR SINE MIR 128 189 -73 225 339 0 70 chr12 116825481 116825596 -27456893 - MIR3 SINE MIR -52 156 50 374 204 144 23 chr12 116826384 116826516 -27455973 + MIR SINE MIR 67 214 -48 1943 111 13 50 chr12 116826545 116826863 -27455626 - AluSx SINE Alu 0 312 1 375 131 0 0 chr12 116827020 116827081 -27455408 + MIR SINE MIR 81 141 -67 313 265 265 22 chr12 116827117 116827302 -27455187 - MIR SINE MIR -3 259 30 271 224 103 19 chr12 116827732 116827839 -27454650 - L2 LINE L2 0 3272 3157 508 291 11 28 chr12 116827871 116828050 -27454439 - MIR SINE MIR -56 206 31 190 200 0 0 chr12 116828077 116828112 -27454377 - L2 LINE L2 -18 3295 3261 540 226 0 9 chr12 116828140 116828255 -27454234 - MIR SINE MIR -114 148 35 377 180 180 0 chr12 116828318 116828418 -27454071 - L2 LINE L2 -2 3311 3194 1830 158 3 20 chr12 116828626 116828923 -27453566 + AluJo SINE Alu 2 293 -19 2360 108 0 0 chr12 116828924 116829221 -27453268 + AluSg SINE Alu 1 297 -13 266 328 75 8 chr12 116829605 116829739 -27452750 + MIR SINE MIR 47 189 -73 204 40 0 0 chr12 116829757 116829782 -27452707 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1720 159 4 8 chr12 116829782 116830046 -27452443 - AluJb SINE Alu -32 280 18 215 246 53 0 chr12 116830051 116830108 -27452381 - MIR SINE MIR -20 242 183 672 258 0 0 chr12 116830468 116830897 -27451592 + (TG)n Simple_repeat Simple_repeat 1 429 0 745 172 6 61 chr12 116831518 116831698 -27450791 - LTR9 LTR ERV1 -86 526 357 363 41 20 0 chr12 116831698 116831747 -27450742 - HUERS-P3 LTR ERV1 -8392 527 478 582 103 23 0 chr12 116831749 116831836 -27450653 - AluSg/x SINE Alu -40 269 181 2594 149 28 7 chr12 116831840 116832269 -27450220 - HUERS-P3 LTR ERV1 -8478 441 4 1070 119 17 11 chr12 116832272 116832449 -27450040 - LTR9 LTR ERV1 0 612 435 423 296 0 42 chr12 116832466 116832608 -27449881 - MIR SINE MIR -105 157 22 595 231 147 6 chr12 116832623 116832779 -27449710 - MER45A DNA AcHobo 0 178 1 21 36 0 0 chr12 116833047 116833075 -27449414 + AT_rich Low_complexity Low_complexity 1 28 0 2306 122 0 0 chr12 116833076 116833379 -27449110 - AluSg SINE Alu -7 303 1 2560 68 0 3 chr12 116833394 116833701 -27448788 - AluY SINE Alu -5 306 1 1791 130 4 4 chr12 116833734 116833988 -27448501 + AluSx SINE Alu 43 296 -16 2413 104 0 0 chr12 116833988 116834286 -27448203 + AluSx SINE Alu 1 299 -13 1812 175 6 16 chr12 116834877 116835191 -27447298 - AluJo SINE Alu -1 311 1 403 243 200 13 chr12 116835500 116835678 -27446811 + MIR SINE MIR 10 217 -45 303 264 94 0 chr12 116835703 116835809 -27446680 - MIR SINE MIR 0 262 147 234 0 0 0 chr12 116835848 116835874 -27446615 + (CCA)n Simple_repeat Simple_repeat 3 28 0 1823 162 10 3 chr12 116835912 116836208 -27446281 - AluJb SINE Alu -10 302 5 214 256 110 12 chr12 116836614 116836696 -27445793 + MIR SINE MIR 61 150 -112 2471 94 0 0 chr12 116836775 116837082 -27445407 - AluSx SINE Alu -5 307 1 248 271 57 0 chr12 116837637 116837707 -27444782 - MER5A DNA MER1_type -3 186 113 2380 103 3 0 chr12 116837864 116838166 -27444323 + AluSp SINE Alu 1 303 -10 1275 193 84 0 chr12 116838244 116838361 -27444128 + AluJo SINE Alu 1 107 -205 189 0 0 0 chr12 116838361 116838382 -27444107 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1275 193 84 0 chr12 116838382 116838502 -27443987 + AluJo SINE Alu 107 258 -54 370 245 21 11 chr12 116838766 116838860 -27443629 + MLT1J2 LTR MaLR 68 162 -288 1872 124 0 65 chr12 116838949 116839272 -27443217 + AluJo SINE Alu 11 312 0 23 0 0 0 chr12 116839932 116839955 -27442534 + AT_rich Low_complexity Low_complexity 1 23 0 2401 66 0 30 chr12 116842225 116842529 -27439960 - AluSq SINE Alu -18 295 1 446 200 53 0 chr12 116843583 116843678 -27438811 - MER58C DNA MER1_type 0 215 116 623 170 0 0 chr12 116843703 116843803 -27438686 + AluJb SINE Alu 195 294 -18 304 263 0 0 chr12 116846769 116846845 -27435644 - L2 LINE L2 -221 3051 2976 799 128 0 0 chr12 116846984 116847101 -27435388 - FLAM_C SINE Alu -16 117 1 2175 125 3 0 chr12 116847261 116847557 -27434932 - AluSq SINE Alu -16 297 1 1062 106 0 0 chr12 116847559 116847691 -27434798 - AluSq/x SINE Alu -181 132 1 2218 125 0 0 chr12 116848220 116848515 -27433974 - AluSg SINE Alu -15 295 1 1589 155 68 8 chr12 116848598 116848863 -27433626 + AluJb SINE Alu 1 281 -31 353 249 152 36 chr12 116848885 116849050 -27433439 + L1MC5 LINE L1 7682 7865 -96 376 131 49 0 chr12 116849272 116849333 -27433156 + AluY SINE Alu 127 190 -111 1800 152 24 20 chr12 116850506 116850803 -27431686 - AluJo SINE Alu -14 298 1 1940 117 5 97 chr12 116851713 116852106 -27430383 + MER4A LTR ERV1 1 357 -307 512 148 204 35 chr12 116852172 116852314 -27430175 + MER4C LTR ERV1 300 465 0 195 256 0 0 chr12 116852320 116852363 -27430126 - MIR SINE MIR -69 193 151 1975 107 30 19 chr12 116852370 116852640 -27429849 - AluSx SINE Alu -17 295 23 1563 167 84 14 chr12 116852695 116852970 -27429519 + AluJb SINE Alu 1 294 -18 2109 131 0 26 chr12 116853010 116853323 -27429166 - AluSx SINE Alu -7 305 1 2765 167 56 27 chr12 116853324 116853846 -27428643 - L1MB3 LINE L1 -41 6142 5600 2333 112 3 0 chr12 116853846 116854149 -27428340 - AluSp SINE Alu -9 304 1 2765 167 56 27 chr12 116854149 116854214 -27428275 - L1MB3 LINE L1 -583 5600 5538 1166 198 0 14 chr12 116854226 116854443 -27428046 - AluSg/x SINE Alu -4 308 95 1941 197 117 115 chr12 116854445 116855329 -27427160 + LTR28 LTR ERV1 9 816 -13 572 135 11 0 chr12 116855345 116855434 -27427055 - AluJ/FLAM SINE Alu -221 91 2 868 220 6 0 chr12 116855453 116855612 -27426877 - FRAM SINE Alu -19 157 1 192 358 12 0 chr12 116855623 116855704 -27426785 - MIR SINE MIR -121 141 60 340 260 123 41 chr12 116858109 116858255 -27424234 + L1ME4a LINE L1 5964 6121 0 23 0 0 0 chr12 116858840 116858863 -27423626 + AT_rich Low_complexity Low_complexity 1 23 0 222 91 0 0 chr12 116859661 116859694 -27422795 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 991 273 92 45 chr12 116859841 116860417 -27422072 + L1ME4a LINE L1 5517 6119 -2 34 24 0 0 chr12 116861165 116861206 -27421283 + AT_rich Low_complexity Low_complexity 1 41 0 821 142 8 0 chr12 116861206 116861326 -27421163 - FLAM_A SINE Alu -11 122 2 190 298 282 16 chr12 116861328 116861452 -27421037 - MIR SINE MIR -62 200 44 830 159 0 0 chr12 116862684 116862816 -27419673 + FLAM_C SINE Alu 1 132 -1 332 267 56 0 chr12 116863155 116863245 -27419244 - MIR SINE MIR -140 122 28 492 329 198 13 chr12 116863772 116864146 -27418343 - L3 LINE CR1 -66 1511 1069 204 40 0 0 chr12 116864526 116864551 -27417938 + (T)n Simple_repeat Simple_repeat 1 25 0 2146 118 0 7 chr12 116865049 116865345 -27417144 - AluSx SINE Alu -18 294 1 2036 153 0 6 chr12 116865929 116866243 -27416246 - AluSx SINE Alu 0 312 1 2207 112 0 26 chr12 116866276 116866588 -27415901 + AluJb SINE Alu 1 304 -8 426 174 0 23 chr12 116866600 116866686 -27415803 + L1MB4 LINE L1 6085 6168 -12 53 57 0 0 chr12 116867259 116867347 -27415142 + AT_rich Low_complexity Low_complexity 1 88 0 2379 90 3 0 chr12 116867349 116867649 -27414840 + AluSx SINE Alu 1 301 -11 1549 182 11 22 chr12 116869963 116870232 -27412257 - AluJo SINE Alu -3 309 44 1626 168 47 27 chr12 116870544 116870841 -27411648 + AluJb SINE Alu 4 306 -6 449 76 0 54 chr12 116870841 116870933 -27411556 + (GGGAA)n Simple_repeat Simple_repeat 2 88 0 2314 110 0 0 chr12 116871051 116871350 -27411139 + AluSx SINE Alu 1 299 -13 291 286 38 19 chr12 116872064 116872169 -27410320 + L2 LINE L2 3147 3253 -19 279 234 58 47 chr12 116872277 116872424 -27410065 + MIR SINE MIR 41 192 -62 187 351 218 6 chr12 116872467 116872632 -27409857 + L3 LINE CR1 1280 1479 -98 341 323 37 94 chr12 116873110 116873460 -27409029 + L2 LINE L2 2943 3272 0 244 290 60 0 chr12 116873758 116873858 -27408631 + L2 LINE L2 2950 3055 -217 2174 135 0 3 chr12 116874401 116874712 -27407777 + AluSx SINE Alu 1 310 -2 1785 171 13 10 chr12 116875027 116875326 -27407163 + AluJo SINE Alu 1 300 -12 2112 127 0 3 chr12 116875872 116876164 -27406325 - AluSx SINE Alu -21 291 1 1457 169 120 4 chr12 116876657 116876923 -27405566 + AluJo SINE Alu 2 298 -4 226 77 0 173 chr12 116877097 116877149 -27405340 + L1MB1 LINE L1 6113 6155 -13 944 117 0 29 chr12 116877151 116877288 -27405201 - FLAM_C SINE Alu 0 133 1 1483 186 55 39 chr12 116878207 116878326 -27404163 + AluJo SINE Alu 1 117 -195 243 0 0 0 chr12 116878326 116878353 -27404136 + (CA)n Simple_repeat Simple_repeat 2 28 0 1483 186 55 39 chr12 116878353 116878540 -27403949 + AluJo SINE Alu 117 312 0 314 266 193 35 chr12 116878592 116878819 -27403670 - MIR SINE MIR -1 261 3 458 165 0 35 chr12 116879159 116879244 -27403245 - AluJb SINE Alu -8 304 223 1374 166 5 9 chr12 116879321 116879544 -27402945 - AluJb SINE Alu -90 222 1 969 185 0 0 chr12 116879553 116879715 -27402774 - FRAM SINE Alu -9 167 6 286 274 32 0 chr12 116879725 116879820 -27402669 + MARNA DNA Mariner 149 246 -340 2015 153 13 0 chr12 116880773 116881073 -27401416 - AluSx SINE Alu -8 304 1 2170 107 3 35 chr12 116881276 116881593 -27400896 + AluSx SINE Alu 5 311 -1 575 104 0 0 chr12 116881783 116881860 -27400629 + AluJb SINE Alu 38 114 -198 303 211 167 44 chr12 116882011 116882125 -27400364 + L1ME4a LINE L1 5982 6109 -12 2123 122 4 0 chr12 116886157 116886435 -27396054 + AluSx SINE Alu 3 281 -31 487 270 5 81 chr12 116886788 116886929 -27395560 - MER5B DNA MER1_type -3 175 50 1660 181 21 17 chr12 116886929 116887216 -27395273 + AluJb SINE Alu 1 288 -24 487 270 5 81 chr12 116887216 116887259 -27395230 - MER5B DNA MER1_type -128 50 5 1887 143 13 38 chr12 116887279 116887593 -27394896 + AluSx SINE Alu 1 306 -6 790 137 0 0 chr12 116887937 116888054 -27394435 - FLAM_C SINE Alu -16 117 1 195 231 154 77 chr12 116888104 116888195 -27394294 - MIR SINE MIR -64 198 101 364 266 67 110 chr12 116888497 116888779 -27393710 - L2 LINE L2 -5 3267 2998 1343 161 0 0 chr12 116889208 116889407 -27393082 + AluJb SINE Alu 85 283 -29 212 0 36 0 chr12 116889423 116889451 -27393038 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 191 369 0 0 chr12 116889458 116889523 -27392966 - MIR SINE MIR -138 124 60 629 239 0 38 chr12 116890811 116890970 -27391519 + MER3 DNA MER1_type 53 205 -4 344 221 47 12 chr12 116891484 116891570 -27390919 - MIR3 SINE MIR -37 171 83 403 193 151 35 chr12 116891570 116891758 -27390731 - MER2 DNA MER2_type 0 345 7 181 296 74 19 chr12 116891768 116891822 -27390667 - MIR SINE MIR -131 77 21 201 267 0 0 chr12 116892311 116892356 -27390133 - MIR SINE MIR -40 222 178 948 152 97 0 chr12 116892399 116892564 -27389925 + AluSg/x SINE Alu 130 310 0 305 342 9 0 chr12 116892570 116892681 -27389808 - MIR SINE MIR -138 124 13 37 52 0 0 chr12 116892912 116892970 -27389519 + AT_rich Low_complexity Low_complexity 1 58 0 185 92 74 80 chr12 116892987 116893150 -27389339 + (TTAA)n Simple_repeat Simple_repeat 4 165 0 278 94 39 94 chr12 116893152 116893280 -27389209 + (TATAA)n Simple_repeat Simple_repeat 3 123 0 1602 218 153 15 chr12 116893302 116893765 -27388724 + L1MC4 LINE L1 6522 7048 -994 1705 271 82 19 chr12 116893788 116894106 -27388383 + L1MC4 LINE L1 7245 7542 -500 2142 137 0 3 chr12 116894106 116894413 -27388076 + AluSx SINE Alu 1 306 -6 1705 271 82 19 chr12 116894413 116894714 -27387775 + L1MC4 LINE L1 7542 7903 -139 822 138 26 7 chr12 116894774 116894926 -27387563 - L1MA4A LINE L1 -5 6298 6144 1975 144 3 20 chr12 116894936 116895241 -27387248 - AluJb SINE Alu -12 300 1 199 297 99 30 chr12 116896230 116896331 -27386158 + L2 LINE L2 3205 3312 -1 2251 121 7 3 chr12 116897407 116897713 -27384776 + AluSx SINE Alu 1 307 -5 379 328 32 8 chr12 116898216 116898341 -27384148 - MIR3 SINE MIR -45 163 36 2310 74 3 20 chr12 116898683 116898981 -27383508 + AluSx SINE Alu 1 293 -19 207 162 0 0 chr12 116898982 116899019 -27383470 + (TA)n Simple_repeat Simple_repeat 2 38 0 1905 153 50 10 chr12 116899019 116899319 -27383170 + AluJb SINE Alu 1 312 0 194 225 45 162 chr12 116899750 116899861 -27382628 - MIR SINE MIR -89 119 22 433 314 81 38 chr12 116899913 116900098 -27382391 + MIR SINE MIR 16 208 -54 800 219 51 15 chr12 116900141 116900337 -27382152 + L2 LINE L2 3107 3309 -4 700 126 7 98 chr12 116900616 116900682 -27381807 + MER45A DNA AcHobo 49 97 -1484 2358 110 0 0 chr12 116900682 116900992 -27381497 - AluSx SINE Alu -2 310 1 700 126 7 98 chr12 116900992 116901068 -27381421 + MER45A DNA AcHobo 97 178 0 302 250 215 23 chr12 116901227 116901399 -27381090 - MIR SINE MIR -12 250 46 247 54 108 0 chr12 116901910 116901947 -27380542 + MLT1E1 LTR MaLR 299 339 -315 1372 108 54 0 chr12 116901984 116902169 -27380320 + AluSx SINE Alu 1 195 -117 265 150 0 0 chr12 116902180 116902220 -27380269 + AluSc SINE Alu 150 189 -110 988 101 119 12 chr12 116902220 116902388 -27380101 + AluSg/x SINE Alu 125 310 0 875 186 59 93 chr12 116902389 116902563 -27379926 + MLT1E1 LTR MaLR 426 591 -63 2174 117 3 10 chr12 116902563 116902863 -27379626 + AluSq SINE Alu 1 298 -15 875 186 59 93 chr12 116902863 116902925 -27379564 + MLT1E1 LTR MaLR 591 654 0 290 303 130 0 chr12 116903095 116903303 -27379186 - L2 LINE L2 -2781 533 299 1994 146 7 7 chr12 116904061 116904356 -27378133 - AluJo SINE Alu -17 295 1 216 320 48 41 chr12 116904384 116904531 -27377958 - MIR SINE MIR -87 175 28 2131 88 25 3 chr12 116904632 116904915 -27377574 - AluSx SINE Alu -23 289 1 1953 141 13 29 chr12 116906423 116906729 -27375760 + AluJo SINE Alu 1 301 -11 433 236 1 96 chr12 116906964 116907443 -27375046 + G-rich Low_complexity Low_complexity 1 433 0 351 222 5 90 chr12 116907500 116907689 -27374800 + G-rich Low_complexity Low_complexity 3 175 0 446 257 5 80 chr12 116907721 116908012 -27374477 + G-rich Low_complexity Low_complexity 1 269 0 752 175 8 8 chr12 116909085 116909211 -27373278 + FLAM_C SINE Alu 2 127 -16 2260 92 24 10 chr12 116909393 116909687 -27372802 - AluSc SINE Alu -11 298 1 2224 112 3 0 chr12 116910799 116911095 -27371394 + AluSx SINE Alu 1 297 -15 650 210 183 5 chr12 116911272 116911458 -27371031 + MER20B DNA MER1_type 1 219 0 2260 129 56 24 chr12 116912247 116912658 -27369831 + L1MB7 LINE L1 5729 6152 -32 39 95 0 0 chr12 116914465 116914581 -27367908 + GC_rich Low_complexity Low_complexity 1 116 0 26 0 0 0 chr12 116914711 116914737 -27367752 + GC_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr12 116914757 116914781 -27367708 + (CCGGG)n Simple_repeat Simple_repeat 4 27 0 223 191 0 32 chr12 116914784 116914847 -27367642 + C-rich Low_complexity Low_complexity 6 66 0 24 0 0 0 chr12 116914973 116914997 -27367492 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 116915013 116915035 -27367454 + GC_rich Low_complexity Low_complexity 1 22 0 2637 52 0 3 chr12 116915143 116915450 -27367039 + AluSc SINE Alu 1 306 -3 314 303 92 13 chr12 116915567 116915719 -27366770 - L2 LINE L2 -198 3074 2911 241 262 68 10 chr12 116915781 116915884 -27366605 - L2 LINE L2 -610 2704 2596 847 226 103 31 chr12 116916193 116916454 -27366035 + MER20B DNA MER1_type 3 282 -501 498 61 0 0 chr12 116916458 116916524 -27365965 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 1011 215 182 4 chr12 116916529 116916776 -27365713 - AluJb SINE Alu -11 291 1 1299 119 0 6 chr12 116916810 116916987 -27365502 + AluSg/x SINE Alu 97 272 -38 1368 62 0 0 chr12 116917008 116917187 -27365302 + (GGGGA)n Simple_repeat Simple_repeat 2 180 0 303 244 15 84 chr12 116917196 116917327 -27365162 + MER20B DNA MER1_type 349 470 -313 360 233 0 0 chr12 116917476 116917566 -27364923 + MER20B DNA MER1_type 541 630 -153 779 201 62 6 chr12 116917566 116917745 -27364744 - MER5A DNA MER1_type 0 189 1 859 137 19 153 chr12 116918151 116918273 -27364216 + MER96B DNA MER1_type? 42 179 -238 2072 116 51 0 chr12 116918273 116918566 -27363923 - AluSx SINE Alu -4 308 1 859 137 19 153 chr12 116918566 116918582 -27363907 + MER96B DNA MER1_type? 179 196 -221 1584 175 18 11 chr12 116918582 116918868 -27363621 - AluJo SINE Alu -24 288 1 859 137 19 153 chr12 116918868 116918990 -27363499 + MER96B DNA MER1_type? 196 268 -149 982 120 140 0 chr12 116919038 116919188 -27363301 + AluSg/x SINE Alu 134 304 -6 268 228 25 13 chr12 116919562 116919641 -27362848 + L2 LINE L2 3019 3098 -174 359 331 32 0 chr12 116919728 116919852 -27362637 - MIR SINE MIR -111 151 24 264 66 40 132 chr12 116919897 116919973 -27362516 + MADE1 DNA Mariner 1 69 -11 2408 94 0 0 chr12 116920008 116920305 -27362184 - AluSx SINE Alu -15 297 1 1929 199 50 79 chr12 116920388 116920745 -27361744 + MLT1D LTR MaLR 3 369 -136 767 155 77 42 chr12 116920745 116920913 -27361576 - FAM SINE Alu 0 175 2 1462 52 0 10 chr12 116920918 116921110 -27361379 - L1PA7 LINE L1 -1 6153 5964 1929 199 50 79 chr12 116921110 116921141 -27361348 + MLT1D LTR MaLR 373 403 -102 628 150 0 86 chr12 116921141 116921171 -27361318 - FLAM_A SINE Alu -171 131 100 1553 163 107 4 chr12 116921171 116921441 -27361048 + AluJb SINE Alu 1 298 -14 628 150 0 86 chr12 116921441 116921550 -27360939 - FLAM_A SINE Alu -202 100 4 1929 199 50 79 chr12 116921550 116921672 -27360817 + MLT1D LTR MaLR 403 505 0 251 317 117 25 chr12 116921776 116921896 -27360593 - L2 LINE L2 -4 3268 3138 2208 106 7 7 chr12 116921968 116922269 -27360220 + AluSx SINE Alu 1 301 -11 336 191 147 29 chr12 116922328 116922464 -27360025 - L2 LINE L2 -147 3166 3015 1527 148 93 22 chr12 116922559 116922829 -27359660 - AluSx SINE Alu -23 289 1 2367 112 3 0 chr12 116922878 116923190 -27359299 + AluSq SINE Alu 1 313 0 1426 179 147 51 chr12 116923297 116923450 -27359039 + MLT1C LTR MaLR 6 143 -324 2280 99 3 0 chr12 116923450 116923768 -27358721 + AluSp SINE Alu 2 320 0 1426 179 147 51 chr12 116923768 116924027 -27358462 + MLT1C LTR MaLR 143 459 -8 2050 146 7 0 chr12 116924517 116924811 -27357678 + AluSx SINE Alu 5 300 -12 2665 192 9 55 chr12 116924881 116925245 -27357244 + MLT1F LTR MaLR 1 332 -210 1944 144 0 7 chr12 116925245 116925555 -27356934 - AluSx SINE Alu 0 308 1 2665 192 9 55 chr12 116925555 116925751 -27356738 + MLT1F LTR MaLR 332 536 -6 362 263 69 74 chr12 116925887 116926062 -27356427 + L1ME LINE L1 4455 4628 -1518 351 247 21 0 chr12 116926365 116926458 -27356031 - MIR SINE MIR -156 106 12 2220 148 0 0 chr12 116926586 116926897 -27355592 + AluSx SINE Alu 1 311 -1 2284 119 3 0 chr12 116926915 116927225 -27355264 + AluSq SINE Alu 3 313 0 2066 142 0 3 chr12 116927496 116927798 -27354691 + AluSx SINE Alu 2 302 -10 2508 75 0 0 chr12 116927908 116928203 -27354286 + AluSp SINE Alu 1 295 -18 726 167 64 32 chr12 116928295 116928409 -27354080 - FRAM SINE Alu -141 171 49 2995 119 93 87 chr12 116928409 116928991 -27353498 + LTR8 LTR ERV1 1 589 -102 2221 104 6 19 chr12 116928991 116929308 -27353181 + AluSq SINE Alu 1 313 0 2995 119 93 87 chr12 116929308 116929412 -27353077 + LTR8 LTR ERV1 589 691 0 726 167 64 32 chr12 116929412 116929453 -27353036 - FRAM SINE Alu -263 49 11 397 217 120 91 chr12 116929486 116929549 -27352940 + L1ME LINE L1 5209 5269 -877 2586 73 0 0 chr12 116929549 116929850 -27352639 + AluSg SINE Alu 1 301 -9 397 217 120 91 chr12 116929850 116929961 -27352528 + L1ME LINE L1 5269 5388 -758 436 214 152 0 chr12 116929978 116930090 -27352399 + MER96 DNA MER1_type? 1 129 -46 414 300 40 0 chr12 116930090 116930240 -27352249 + L1ME LINE L1 5544 5699 -422 2057 138 3 23 chr12 116930311 116930615 -27351874 + AluJo SINE Alu 1 298 -14 1019 135 14 0 chr12 116930660 116930808 -27351681 + FRAM SINE Alu 21 170 -6 337 295 93 38 chr12 116930886 116931069 -27351420 + HAL1b LINE L1 1154 1346 -2 1946 147 31 0 chr12 116931450 116931743 -27350746 - AluJb SINE Alu -10 302 1 1883 127 33 0 chr12 116932107 116932382 -27350107 + AluSg SINE Alu 11 294 -16 441 0 0 0 chr12 116932389 116932438 -27350051 + (CA)n Simple_repeat Simple_repeat 2 50 0 301 186 48 21 chr12 116932562 116932707 -27349782 + CT-rich Low_complexity Low_complexity 1 149 0 1475 200 24 86 chr12 116932734 116933154 -27349335 - L1ME3 LINE L1 -42 6120 5727 4917 160 14 47 chr12 116933158 116933350 -27349139 + MER49 LTR ERV1 1 198 -725 1808 168 46 0 chr12 116933350 116933469 -27349020 + AluJb SINE Alu 1 113 -199 243 0 0 0 chr12 116933469 116933496 -27348993 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1808 168 46 0 chr12 116933496 116933661 -27348828 + AluJb SINE Alu 113 298 -14 4917 160 14 47 chr12 116933661 116934090 -27348399 + MER49 LTR ERV1 198 640 -283 255 61 0 0 chr12 116934090 116934123 -27348366 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 2012 135 0 4 chr12 116934123 116934404 -27348085 - AluJb SINE Alu -32 280 1 4917 160 14 47 chr12 116934404 116934725 -27347764 + MER49 LTR ERV1 638 914 -9 419 270 21 0 chr12 116934746 116934888 -27347601 - L1ME3 LINE L1 -456 5714 5567 242 287 78 62 chr12 116934890 116934969 -27347520 + MIR SINE MIR 129 212 -50 2293 115 0 10 chr12 116934969 116935283 -27347206 + AluSx SINE Alu 1 311 -1 242 287 78 62 chr12 116935283 116935332 -27347157 + MIR SINE MIR 212 259 -3 1389 164 102 27 chr12 116935552 116935795 -27346694 + AluJo SINE Alu 7 231 -81 180 0 0 0 chr12 116935795 116935815 -27346674 + (TC)n Simple_repeat Simple_repeat 2 21 0 2266 116 3 10 chr12 116935815 116936125 -27346364 - AluSx SINE Alu -4 308 1 1389 164 102 27 chr12 116936125 116936136 -27346353 + AluJo SINE Alu 230 281 -31 2150 130 0 9 chr12 116936149 116936464 -27346025 - AluSx SINE Alu 0 312 1 617 271 33 6 chr12 116937530 116937711 -27344778 + MIR SINE MIR 77 262 0 430 347 60 0 chr12 116938085 116938284 -27344205 + MIR SINE MIR 46 256 -6 324 0 0 0 chr12 116938319 116938355 -27344134 + (CA)n Simple_repeat Simple_repeat 1 36 0 324 0 0 0 chr12 116938631 116938667 -27343822 + (CA)n Simple_repeat Simple_repeat 2 37 0 2149 125 10 7 chr12 116938758 116939062 -27343427 - AluSq SINE Alu -8 305 1 279 54 0 0 chr12 116939113 116939150 -27343339 + (TTTTA)n Simple_repeat Simple_repeat 5 41 0 2223 129 0 0 chr12 116939387 116939681 -27342808 + AluSq SINE Alu 1 294 -19 392 211 0 88 chr12 116939682 116939710 -27342779 - MIR SINE MIR -123 139 110 483 169 17 59 chr12 116939710 116939828 -27342661 - MER81 DNA DNA 0 114 2 392 211 0 88 chr12 116939828 116939913 -27342576 - MIR SINE MIR -152 110 36 938 179 0 0 chr12 116940025 116940187 -27342302 + FRAM SINE Alu 3 164 -2 241 305 37 0 chr12 116940205 116940287 -27342202 - MIR SINE MIR -66 142 58 2159 137 0 3 chr12 116940296 116940602 -27341887 - AluSg SINE Alu -5 305 1 394 261 87 29 chr12 116940685 116940823 -27341666 - MIR SINE MIR -16 246 101 274 286 77 11 chr12 116941323 116941414 -27341075 + L2 LINE L2 3168 3264 -8 774 261 0 41 chr12 116941429 116941647 -27340842 + MIR SINE MIR 54 262 0 280 215 15 15 chr12 116941731 116941796 -27340693 - MIR SINE MIR -150 112 48 502 289 75 12 chr12 116941916 116942089 -27340400 + MIR SINE MIR 71 254 -8 2072 132 27 3 chr12 116942484 116942780 -27339709 + AluSx SINE Alu 2 304 -8 2212 122 10 0 chr12 116942912 116943208 -27339281 - AluSq SINE Alu -14 299 1 257 176 0 20 chr12 116943208 116943259 -27339230 - AluJo SINE Alu -167 135 86 1263 204 0 5 chr12 116943259 116943480 -27339009 - AluJo SINE Alu -92 220 1 1664 177 4 4 chr12 116943656 116943922 -27338567 - AluJo SINE Alu -46 266 1 554 287 179 15 chr12 116943971 116944239 -27338250 - MLT1J2 LTR MaLR -137 313 2 859 260 10 10 chr12 116945108 116945316 -27337173 - MIR SINE MIR -21 241 34 303 298 50 16 chr12 116945439 116945497 -27336992 - MIR SINE MIR -39 223 168 2257 113 7 0 chr12 116945497 116945790 -27336699 - AluSx SINE Alu -17 295 1 303 298 50 16 chr12 116945790 116945852 -27336637 - MIR SINE MIR -94 168 99 1015 285 8 0 chr12 116946015 116946264 -27336225 + MIR SINE MIR 11 261 -1 2144 133 0 13 chr12 116946266 116946566 -27335923 - AluSx SINE Alu -16 296 1 454 215 49 1 chr12 116946940 116947065 -27335424 - MIR SINE MIR -64 144 15 378 274 25 32 chr12 116947158 116947315 -27335174 - L3 LINE CR1 -166 1411 1256 221 250 47 16 chr12 116947597 116947661 -27334828 + MER5B DNA MER1_type 1 66 -112 251 311 82 15 chr12 116947694 116947900 -27334589 - L1 LINE L1 -1880 4266 4047 2311 97 0 10 chr12 116947979 116948277 -27334212 - AluY SINE Alu -16 295 1 2129 146 0 3 chr12 116948323 116948632 -27333857 + AluJb SINE Alu 1 308 -4 398 234 12 117 chr12 116948654 116948747 -27333742 + MER5A DNA MER1_type 37 105 -84 1838 166 0 20 chr12 116948747 116949042 -27333447 - AluJo SINE Alu -9 303 15 398 234 12 117 chr12 116949042 116949119 -27333370 + MER5A DNA MER1_type 105 189 0 2511 65 0 13 chr12 116949309 116949617 -27332872 - AluY SINE Alu -2 309 6 328 287 180 0 chr12 116949821 116949943 -27332546 + MIR3 SINE MIR 33 176 -32 203 245 0 0 chr12 116950666 116950715 -27331774 + L2 LINE L2 3207 3255 -17 294 312 65 43 chr12 116951102 116951288 -27331201 - MIR SINE MIR -38 224 35 200 98 0 24 chr12 116951838 116951879 -27330610 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1845 158 38 10 chr12 116951881 116952172 -27330317 - AluJb SINE Alu -13 299 1 734 279 5 25 chr12 116952175 116952376 -27330113 - MIR SINE MIR -62 200 4 610 206 6 6 chr12 116952408 116952588 -27329901 + (TG)n Simple_repeat Simple_repeat 1 180 0 524 255 2 7 chr12 116952601 116953011 -27329478 + (TG)n Simple_repeat Simple_repeat 1 407 0 2879 123 108 46 chr12 116953027 116953298 -27329191 - LTR59 LTR ERV1 0 597 344 2412 76 10 3 chr12 116953298 116953599 -27328890 + AluSg SINE Alu 1 303 -7 2879 123 108 46 chr12 116953599 116953889 -27328600 - LTR59 LTR ERV1 -253 344 1 2348 103 3 3 chr12 116954371 116954673 -27327816 - AluSq SINE Alu -11 302 1 2109 130 3 0 chr12 116954832 116955117 -27327372 + AluJb SINE Alu 11 296 -16 231 368 29 0 chr12 116955147 116955318 -27327171 + (ATGGTG)n Simple_repeat Simple_repeat 5 180 0 378 328 6 22 chr12 116955560 116955743 -27326746 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 441 243 11 69 chr12 116956182 116956443 -27326046 + (ATGGTG)n Simple_repeat Simple_repeat 1 245 0 316 241 25 13 chr12 116956764 116956843 -27325646 - MIR SINE MIR -58 150 71 527 325 21 10 chr12 116957128 116957322 -27325167 - MIR SINE MIR -13 249 54 512 252 0 0 chr12 116958034 116958141 -27324348 - MER103 DNA DNA -59 107 1 559 299 27 10 chr12 116958516 116958531 -27323958 - MIR SINE MIR -25 237 224 2256 117 0 0 chr12 116958531 116958840 -27323649 - AluY SINE Alu -1 310 2 559 299 27 10 chr12 116958840 116959058 -27323431 - MIR SINE MIR -38 224 1 2233 138 0 0 chr12 116959256 116959567 -27322922 + AluSx SINE Alu 1 311 -1 422 113 0 14 chr12 116959844 116959915 -27322574 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 2069 95 4 11 chr12 116959916 116960189 -27322300 - AluSg SINE Alu -39 271 1 2193 99 16 7 chr12 116960423 116960727 -27321762 - AluSx SINE Alu -5 307 1 363 133 0 0 chr12 116960884 116960944 -27321545 + MIR SINE MIR 81 140 -68 305 70 0 0 chr12 117161210 117161253 -27121236 - MIR SINE MIR -114 148 106 231 36 0 0 chr12 117161826 117161854 -27120635 + (TC)n Simple_repeat Simple_repeat 1 28 0 1765 155 0 0 chr12 117161854 117162118 -27120371 - AluJb SINE Alu -48 264 1 219 36 0 0 chr12 117162424 117162452 -27120037 + (TA)n Simple_repeat Simple_repeat 2 29 0 826 225 6 11 chr12 117162479 117162657 -27119832 - AluJb SINE Alu 0 312 136 233 339 54 8 chr12 117162658 117162788 -27119701 - L2 LINE L2 -13 3259 3124 1163 193 9 5 chr12 117163294 117163512 -27118977 + MER20 DNA MER1_type 1 219 0 5559 179 58 65 chr12 117163561 117164383 -27118106 - L1M3 LINE L1 -496 5684 4857 2522 72 0 7 chr12 117164383 117164687 -27117802 - AluY SINE Alu -9 302 1 5559 179 58 65 chr12 117164687 117165719 -27116770 - L1M3 LINE L1 -1323 4857 3849 2085 129 0 0 chr12 117165954 117166249 -27116240 + AluSx SINE Alu 1 295 -17 542 182 0 0 chr12 117166373 117166461 -27116028 - AluSg/x SINE Alu -22 288 201 2075 133 3 19 chr12 117166465 117166781 -27115708 - AluSx SINE Alu -1 311 1 2317 100 0 6 chr12 117167171 117167482 -27115007 + AluSx SINE Alu 1 309 -3 278 261 27 27 chr12 117167827 117167938 -27114551 + L2 LINE L2 3153 3263 -50 658 192 102 97 chr12 117167966 117168205 -27114284 + L1ME1 LINE L1 5594 5826 -340 1659 159 20 30 chr12 117168205 117168500 -27113989 + AluJb SINE Alu 1 292 -20 658 192 102 97 chr12 117168500 117168571 -27113918 + L1ME1 LINE L1 5826 5895 -271 2114 157 25 22 chr12 117168572 117168928 -27113561 - MSTC LTR MaLR -71 357 1 792 226 47 5 chr12 117168928 117169118 -27113371 + L1ME1 LINE L1 5911 6108 -58 233 190 0 52 chr12 117169118 117169176 -27113313 - L2 LINE L2 -88 3225 3171 2009 140 0 13 chr12 117169183 117169491 -27112998 + AluJo SINE Alu 1 304 -8 395 313 129 9 chr12 117169527 117169760 -27112729 - MIR SINE MIR 0 262 2 341 210 37 0 chr12 117170273 117170354 -27112135 + MIR3 SINE MIR 87 170 -38 197 269 15 0 chr12 117170399 117170466 -27112023 + MER5A DNA MER1_type 101 168 -21 202 260 0 0 chr12 117170485 117170535 -27111954 + MIR3 SINE MIR 151 200 -8 189 0 0 0 chr12 117170986 117171007 -27111482 + (TG)n Simple_repeat Simple_repeat 1 21 0 322 222 60 103 chr12 117171206 117171391 -27111098 + MER5B DNA MER1_type 2 178 0 253 198 325 48 chr12 117171444 117171570 -27110919 - MER5A DNA MER1_type -26 163 3 2117 108 3 42 chr12 117171631 117171938 -27110551 + AluSx SINE Alu 1 295 -17 242 73 0 24 chr12 117171942 117171983 -27110506 + L1MB4 LINE L1 6138 6177 -3 378 143 0 0 chr12 117171983 117172046 -27110443 + (CA)n Simple_repeat Simple_repeat 1 63 0 661 240 0 0 chr12 117172111 117172240 -27110249 + FLAM_C SINE Alu 2 130 -13 1944 163 10 0 chr12 117172300 117172606 -27109883 + AluSx SINE Alu 1 309 -3 265 213 13 40 chr12 117172606 117172672 -27109817 + MER5A DNA MER1_type 10 75 -114 1965 159 0 3 chr12 117172673 117172968 -27109521 + AluJo SINE Alu 1 294 -18 43844 33 22 1 chr12 117172972 117178997 -27103492 + L1PA2 LINE L1 1 6150 -5 281 106 0 0 chr12 117179010 117179057 -27103432 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 307 257 229 0 chr12 117179060 117179165 -27103324 + MER5A DNA MER1_type 61 189 0 1910 160 3 0 chr12 117179644 117179944 -27102545 - AluJo SINE Alu -11 301 1 1596 156 78 11 chr12 117180447 117180729 -27101760 - AluJb SINE Alu -11 301 1 326 23 23 0 chr12 117180739 117180782 -27101707 + (CATTT)n Simple_repeat Simple_repeat 2 45 0 2079 132 0 0 chr12 117180783 117181064 -27101425 - AluSx SINE Alu -31 281 1 662 257 29 19 chr12 117181234 117181440 -27101049 + MIR SINE MIR 21 228 -34 232 316 77 32 chr12 117181445 117181600 -27100889 - L2 LINE L2 0 3313 3152 302 268 49 0 chr12 117181673 117181755 -27100734 - MIR SINE MIR -77 185 100 320 266 31 45 chr12 117181824 117182026 -27100463 - L2 LINE L2 -315 2957 2689 2031 126 4 0 chr12 117182070 117182374 -27100115 - AluSq SINE Alu 0 309 5 2630 206 7 18 chr12 117182388 117182950 -27099539 - MER74A LTR ERVL -2 556 1 530 312 33 0 chr12 117183423 117183638 -27098851 + L3 LINE CR1 1249 1470 -107 343 332 47 67 chr12 117183662 117183789 -27098700 - MIR SINE MIR 0 262 141 1947 150 3 0 chr12 117183789 117184076 -27098413 + AluJo SINE Alu 7 294 -18 343 332 47 67 chr12 117184076 117184201 -27098288 - MIR SINE MIR -121 141 15 321 243 10 48 chr12 117184238 117184341 -27098148 + MER5A DNA MER1_type 47 145 -44 201 270 0 16 chr12 117184418 117184481 -27098008 + MIR3 SINE MIR 146 207 -1 572 355 16 4 chr12 117184625 117184867 -27097622 - MIR SINE MIR -5 257 13 2386 106 0 0 chr12 117184978 117185289 -27097200 - AluSx SINE Alu -1 311 1 1744 78 0 9 chr12 117185524 117185742 -27096747 - AluSq SINE Alu -97 216 1 1204 148 32 19 chr12 117185748 117185964 -27096525 + MER20 DNA MER1_type 1 219 0 930 162 0 30 chr12 117186005 117186172 -27096317 + FRAM SINE Alu 2 163 -3 27 29 0 0 chr12 117186172 117186206 -27096283 + AT_rich Low_complexity Low_complexity 1 34 0 1761 158 41 0 chr12 117186539 117186830 -27095659 - AluJo SINE Alu -9 303 1 2035 135 0 10 chr12 117186942 117187239 -27095250 - AluSx SINE Alu -12 300 7 3599 102 31 36 chr12 117187687 117188029 -27094460 + L1MA8 LINE L1 5699 6038 -253 2246 112 7 0 chr12 117188029 117188324 -27094165 + AluSx SINE Alu 1 297 -15 3599 102 31 36 chr12 117188324 117188570 -27093919 + L1MA8 LINE L1 6038 6284 -7 34 0 0 0 chr12 117188571 117188605 -27093884 + AT_rich Low_complexity Low_complexity 1 34 0 1845 162 0 7 chr12 117188675 117188965 -27093524 + AluJo SINE Alu 1 288 -24 251 267 92 15 chr12 117189223 117189354 -27093135 - L2 LINE L2 -96 3217 3077 2044 133 25 73 chr12 117189371 117189422 -27093067 - L1MB3 LINE L1 0 6183 6131 2177 131 3 0 chr12 117189422 117189719 -27092770 - AluSx SINE Alu -14 298 1 2044 133 25 73 chr12 117189719 117190039 -27092450 - L1MB3 LINE L1 -52 6131 5833 1965 144 10 13 chr12 117190039 117190345 -27092144 - AluSg SINE Alu -5 305 1 2044 133 25 73 chr12 117190345 117190408 -27092081 - L1MB3 LINE L1 -350 5833 5769 1617 160 30 48 chr12 117190455 117190745 -27091744 - L1MB3 LINE L1 -394 5777 5492 1834 174 0 10 chr12 117190745 117191055 -27091434 - AluJo SINE Alu -5 307 1 1617 160 30 48 chr12 117191055 117191096 -27091393 - L1MB3 LINE L1 -679 5492 5452 1252 246 122 24 chr12 117191098 117191560 -27090929 - L2 LINE L2 -230 3083 2470 1689 151 40 4 chr12 117191560 117191854 -27090635 + AluSx SINE Alu 1 304 0 1252 246 122 24 chr12 117191854 117191999 -27090490 - L2 LINE L2 -843 2470 2341 377 255 114 16 chr12 117192152 117192336 -27090153 - MIR SINE MIR -35 227 26 503 283 84 27 chr12 117192477 117192738 -27089751 + L2 LINE L2 2776 3060 -212 1245 146 23 46 chr12 117192781 117193000 -27089489 - AluJo SINE Alu -12 300 87 857 124 0 78 chr12 117193081 117193128 -27089361 + MER3 DNA MER1_type 1 50 -112 2029 125 26 47 chr12 117193128 117193472 -27089017 + MER1B DNA MER1_type 1 337 0 857 124 0 78 chr12 117193472 117193577 -27088912 + MER3 DNA MER1_type 50 141 -68 2023 116 32 11 chr12 117193598 117193882 -27088607 - AluSx SINE Alu -22 290 1 28 61 0 0 chr12 117193897 117193946 -27088543 + AT_rich Low_complexity Low_complexity 1 49 0 343 110 0 68 chr12 117193964 117194037 -27088452 + MER3 DNA MER1_type 142 209 0 261 130 0 74 chr12 117193990 117194044 -27088445 - MER3 DNA MER1_type -119 90 41 * 279 54 0 0 chr12 117194129 117194166 -27088323 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 987 248 49 4 chr12 117194845 117195091 -27087398 - MIR SINE MIR 0 262 6 25 0 0 0 chr12 117195756 117195781 -27086708 + AT_rich Low_complexity Low_complexity 1 25 0 388 267 52 0 chr12 117197366 117197482 -27085007 - L2 LINE L2 -3 3269 3148 432 183 202 0 chr12 117197678 117197782 -27084707 + L2 LINE L2 3186 3310 -3 263 236 228 81 chr12 117197778 117197873 -27084616 + MER5B DNA MER1_type 2 120 -58 * 1864 156 13 19 chr12 117197873 117198187 -27084302 - AluJo SINE Alu 0 312 1 263 236 228 81 chr12 117198187 117198214 -27084275 + MER5B DNA MER1_type 120 142 -36 564 306 31 18 chr12 117198509 117198731 -27083758 - MIR SINE MIR -30 232 8 2027 127 0 7 chr12 117199301 117199609 -27082880 + AluSx SINE Alu 1 306 0 1069 164 0 11 chr12 117200064 117200247 -27082242 - AluJb SINE Alu -6 306 126 1432 141 4 21 chr12 117200248 117200482 -27082007 - AluJb SINE Alu -82 230 1 1601 166 40 4 chr12 117200754 117201031 -27081458 + AluJo SINE Alu 1 287 -25 324 219 16 0 chr12 117202794 117202858 -27079631 - MIR3 SINE MIR -34 174 110 278 235 24 12 chr12 117204273 117204358 -27078131 + (TATG)n Simple_repeat Simple_repeat 3 88 0 225 154 0 0 chr12 117204443 117204482 -27078007 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 22 0 0 0 chr12 117204497 117204519 -27077970 + AT_rich Low_complexity Low_complexity 1 22 0 1297 153 19 0 chr12 117205130 117205345 -27077144 - MER20 DNA MER1_type 0 219 1 883 205 0 0 chr12 117205517 117205673 -27076816 - FRAM SINE Alu -14 162 7 195 310 0 14 chr12 117206141 117206212 -27076277 + MIR SINE MIR 82 151 -111 230 283 33 0 chr12 117207538 117207598 -27074891 - Charlie8 DNA MER1_type -2343 74 13 408 111 0 0 chr12 117208093 117208156 -27074333 + (TG)n Simple_repeat Simple_repeat 2 64 0 445 243 159 21 chr12 117208657 117208756 -27073733 + L1ME4a LINE L1 5617 5701 -420 1984 170 36 0 chr12 117208756 117209092 -27073397 - MER7A DNA MER2_type 0 346 1 445 243 159 21 chr12 117209092 117209231 -27073258 + L1ME4a LINE L1 5701 5888 -233 1063 263 119 70 chr12 117209249 117210095 -27072394 + L1ME LINE L1 2 805 -5456 2045 150 0 13 chr12 117210095 117210409 -27072080 + AluJb SINE Alu 1 310 -2 1063 263 119 70 chr12 117210409 117211110 -27071379 + L1ME LINE L1 805 1668 -4593 973 76 0 0 chr12 117211148 117211267 -27071222 - AluSg/x SINE Alu -16 296 178 864 139 0 84 chr12 117211270 117211322 -27071167 + L1M2 LINE L1 5514 5569 -743 2307 95 0 0 chr12 117211322 117211617 -27070872 - AluSg SINE Alu -15 295 1 864 139 0 84 chr12 117211617 117211730 -27070759 + L1M2 LINE L1 5569 5665 -647 1357 234 119 24 chr12 117211740 117212434 -27070055 + L1ME LINE L1 1725 2458 -3622 * 2884 218 36 42 chr12 117212431 117212730 -27069759 + L1ME LINE L1 3479 3778 -2302 2696 42 0 7 chr12 117212730 117213037 -27069452 + AluY SINE Alu 1 305 -6 2884 218 36 42 chr12 117213037 117213604 -27068885 + L1ME LINE L1 3778 4340 -1740 4736 130 64 43 chr12 117213749 117214115 -27068374 + L1MA9 LINE L1 5169 5526 -786 2036 130 3 10 chr12 117214115 117214408 -27068081 + AluSx SINE Alu 1 291 -21 4736 130 64 43 chr12 117214408 117215145 -27067344 + L1MA9 LINE L1 5526 6312 0 3456 164 8 34 chr12 117215142 117215796 -27066693 + L1MB7 LINE L1 5428 6064 -120 * 180 0 0 0 chr12 117215827 117215847 -27066642 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr12 117215903 117215925 -27066564 + AT_rich Low_complexity Low_complexity 1 22 0 364 269 118 78 chr12 117216752 117216997 -27065492 + MIR SINE MIR 8 262 0 2983 166 48 2 chr12 117218463 117219010 -27063479 - L1MB3 LINE L1 0 6183 5612 288 285 62 19 chr12 117219106 117219327 -27063162 + L2 LINE L2 2650 2933 -339 401 294 99 46 chr12 117219440 117220239 -27062250 + L2 LINE L2 2479 3313 0 599 276 50 17 chr12 117220594 117220775 -27061714 + MIR SINE MIR 22 208 -54 1571 182 19 97 chr12 117222447 117222724 -27059765 - L1M4 LINE L1 -5707 835 599 2569 103 76 38 chr12 117222724 117223172 -27059317 - L1PA11 LINE L1 0 6174 5710 1571 182 19 97 chr12 117223172 117223307 -27059182 - L1M4 LINE L1 -5943 599 455 1858 204 44 11 chr12 117223310 117223988 -27058501 - L1ME LINE L1 -488 5678 4982 2223 117 0 0 chr12 117224340 117224630 -27057859 - AluSc SINE Alu -19 290 1 383 340 13 7 chr12 117224987 117225137 -27057352 - MER5A DNA MER1_type -38 151 1 2342 184 92 29 chr12 117225144 117225654 -27056835 - MLT1F LTR MaLR 0 542 1 2237 129 0 0 chr12 117226076 117226385 -27056104 + AluSg SINE Alu 1 309 -1 267 291 49 66 chr12 117226684 117226928 -27055561 - L1ME4a LINE L1 -30 6091 5852 574 278 107 5 chr12 117227143 117227359 -27055130 - L1MC4a LINE L1 -1871 5937 5700 * 5483 207 30 7 chr12 117227355 117228570 -27053919 + L1MB3 LINE L1 4021 5263 -883 3097 146 19 26 chr12 117228570 117229079 -27053410 + L1MB3 LINE L1 5621 6132 -51 1815 181 3 0 chr12 117229079 117229382 -27053107 + AluJo SINE Alu 3 306 -6 3097 146 19 26 chr12 117229382 117229434 -27053055 + L1MB3 LINE L1 6132 6183 0 395 291 132 42 chr12 117229496 117229710 -27052779 - L1MC4a LINE L1 -2189 5619 5371 2286 72 52 3 chr12 117229710 117230000 -27052489 - AluSx SINE Alu -8 304 1 395 291 132 42 chr12 117230000 117230074 -27052415 - L1MC4a LINE L1 -2437 5371 5305 411 272 7 0 chr12 117230273 117230427 -27052062 + MIR SINE MIR 70 224 -38 367 121 0 0 chr12 117230494 117230548 -27051941 - MLT2C1 LTR ERVL 0 397 350 1686 154 28 94 chr12 117230629 117230814 -27051675 - MLT2D LTR ERVL -40 480 284 2201 97 0 44 chr12 117230814 117231134 -27051355 - AluSc SINE Alu -3 306 1 1686 154 28 94 chr12 117231134 117231349 -27051140 - MLT2D LTR ERVL -236 284 1 2250 89 0 3 chr12 117231407 117231719 -27050770 - AluSx SINE Alu 0 311 1 287 244 110 12 chr12 117231771 117231853 -27050636 - MER94 DNA DNA 0 134 45 824 88 0 26 chr12 117232460 117232573 -27049916 + AluJb SINE Alu 34 143 -169 892 219 66 26 chr12 117232605 117232800 -27049689 + Charlie1 DNA MER1_type 3 210 -2551 1971 137 3 26 chr12 117232800 117233107 -27049382 - AluJb SINE Alu -12 300 1 892 219 66 26 chr12 117233107 117233139 -27049350 + Charlie1 DNA MER1_type 210 239 -2522 251 213 85 43 chr12 117233145 117233239 -27049250 + L1ME1 LINE L1 5964 6061 -105 1931 91 0 8 chr12 117233239 117233493 -27048996 + AluSx SINE Alu 61 312 0 2054 132 40 6 chr12 117233493 117233818 -27048671 - MER49 LTR ERV1 -587 336 1 * 3814 130 49 16 chr12 117233818 117234255 -27048234 - Tigger1 DNA MER2_type -1783 635 171 2085 144 0 3 chr12 117234255 117234560 -27047929 + AluSx SINE Alu 1 304 -8 3814 130 49 16 chr12 117234560 117234735 -27047754 - Tigger1 DNA MER2_type -2247 171 3 2320 98 0 0 chr12 117234736 117235042 -27047447 + AluSg SINE Alu 1 306 -4 402 179 205 0 chr12 117235077 117235189 -27047300 + Charlie1 DNA MER1_type 2627 2761 0 1108 165 96 60 chr12 117235328 117235449 -27047040 + MER33 DNA MER1_type 1 104 -2481 2094 76 69 7 chr12 117235449 117235725 -27046764 + AluSg SINE Alu 1 293 -17 1108 165 96 60 chr12 117235725 117235778 -27046711 + MER33 DNA MER1_type 104 154 -2431 632 181 15 23 chr12 117235778 117235911 -27046578 - FLAM_C SINE Alu -1 132 1 1108 165 96 60 chr12 117235911 117235972 -27046517 + MER33 DNA MER1_type 154 211 -2374 2077 115 0 44 chr12 117235972 117236293 -27046196 - AluSx SINE Alu -5 307 1 2368 100 0 0 chr12 117236293 117236592 -27045897 - AluSx SINE Alu -13 299 1 1108 165 96 60 chr12 117236592 117236676 -27045813 + MER33 DNA MER1_type 210 322 -2 391 276 117 37 chr12 117236677 117236891 -27045598 + MIR SINE MIR 30 260 -2 205 152 0 0 chr12 117237344 117237377 -27045112 + (CGG)n Simple_repeat Simple_repeat 1 33 0 268 261 217 25 chr12 117238612 117238815 -27043674 + MIR SINE MIR 14 255 -7 1860 153 3 31 chr12 117238961 117239282 -27043207 + AluJb SINE Alu 1 312 0 660 154 206 6 chr12 117239332 117239507 -27042982 - MIR SINE MIR -2 260 51 247 289 12 12 chr12 117239737 117239820 -27042669 + (CATATA)n Simple_repeat Simple_repeat 5 87 0 351 113 0 0 chr12 117240071 117240124 -27042365 + (TA)n Simple_repeat Simple_repeat 1 53 0 2230 98 20 0 chr12 117240124 117240419 -27042070 - AluSx SINE Alu -11 301 1 524 235 123 72 chr12 117240419 117240793 -27041696 - L2 LINE L2 -10 3303 2911 1880 163 0 0 chr12 117240894 117241215 -27041274 - AluSx SINE Alu 0 321 1 22 35 0 0 chr12 117241906 117241935 -27040554 + AT_rich Low_complexity Low_complexity 1 29 0 2369 84 7 10 chr12 117243011 117243310 -27039179 + AluSp SINE Alu 1 298 -15 712 304 82 7 chr12 117243474 117243780 -27038709 + L1ME4a LINE L1 5347 5675 -446 248 309 24 0 chr12 117243817 117243901 -27038588 - MER103 DNA DNA -11 155 70 1961 154 0 10 chr12 117243913 117244219 -27038270 - AluSx SINE Alu -9 303 1 2156 121 13 0 chr12 117244228 117244533 -27037956 - AluSx SINE Alu -3 309 1 491 216 0 0 chr12 117244709 117244797 -27037692 + 5S rRNA rRNA 3 90 -31 230 310 0 0 chr12 117244948 117245019 -27037470 + L1ME4a LINE L1 5969 6039 -82 1370 69 23 74 chr12 117245246 117245380 -27037109 - MER75B DNA T2_type -261 243 104 2096 114 35 0 chr12 117245380 117245669 -27036820 - AluSx SINE Alu -13 299 1 834 122 0 65 chr12 117245669 117245808 -27036681 - AluJo/FLAM SINE Alu -172 130 1 1370 69 23 74 chr12 117245808 117245888 -27036601 - MER75B DNA T2_type -398 106 39 3688 230 40 54 chr12 117246033 117247065 -27035424 + L1M4c LINE L1 696 1741 -4641 1957 120 18 0 chr12 117247065 117247348 -27035141 + AluSx SINE Alu 20 307 -5 3688 230 40 54 chr12 117247348 117247478 -27035011 + L1M4c LINE L1 1741 1871 -4511 1623 193 14 3 chr12 117247478 117247763 -27034726 - AluJo SINE Alu -24 288 1 3688 230 40 54 chr12 117247763 117247982 -27034507 + L1M4c LINE L1 1871 2092 -4290 2396 87 0 0 chr12 117247982 117248297 -27034192 + AluSc SINE Alu 1 315 0 3688 230 40 54 chr12 117248297 117249065 -27033424 + L1M4c LINE L1 2092 2909 -3473 913 118 0 22 chr12 117249065 117249200 -27033289 - FLAM_C SINE Alu -1 132 1 3688 230 40 54 chr12 117249200 117249497 -27032992 + L1M4c LINE L1 2909 3209 -3173 2743 139 33 16 chr12 117250028 117250481 -27032008 + MER65C LTR ERV1 1 461 0 2392 156 11 47 chr12 117250850 117251319 -27031170 - L1MB7 LINE L1 -53 6131 5680 1226 164 27 0 chr12 117251329 117251531 -27030958 - AluJb SINE Alu -16 296 86 1560 181 45 31 chr12 117251531 117251818 -27030671 - AluJo SINE Alu -16 296 6 1226 164 27 0 chr12 117251818 117251834 -27030655 - AluJb SINE Alu -226 86 72 2023 159 11 16 chr12 117251834 117252212 -27030277 - L1MB4 LINE L1 -224 5956 5581 24 0 0 0 chr12 117252452 117252476 -27030013 + AT_rich Low_complexity Low_complexity 1 24 0 433 221 10 10 chr12 117252550 117252654 -27029835 - L1MD1 LINE L1 0 6242 6139 1136 113 160 51 chr12 117252656 117252731 -27029758 - L1MA9 LINE L1 -33 6279 6214 2246 98 3 0 chr12 117252731 117253027 -27029462 + AluSg1 SINE Alu 1 297 -12 1136 113 160 51 chr12 117253027 117253207 -27029282 - L1MA9 LINE L1 -98 6214 5996 492 287 110 0 chr12 117253307 117253471 -27029018 - MIR SINE MIR -59 203 22 3697 129 41 0 chr12 117253873 117254430 -27028059 + LTR19B LTR ERV1 1 580 0 2195 118 126 60 chr12 117254686 117254868 -27027621 + MSTB LTR MaLR 1 170 -256 2169 131 3 0 chr12 117254868 117255180 -27027309 + AluSq SINE Alu 1 313 0 2195 118 126 60 chr12 117255180 117255395 -27027094 + MSTB LTR MaLR 170 424 -2 4760 147 46 17 chr12 117255399 117256066 -27026423 + L1MB4 LINE L1 5277 5974 -206 1700 170 23 23 chr12 117256066 117256372 -27026117 + AluJo SINE Alu 1 306 -6 4760 147 46 17 chr12 117256372 117256533 -27025956 + L1MB4 LINE L1 5974 6129 -51 1059 204 21 70 chr12 117256547 117256832 -27025657 + MLT1A2 LTR MaLR 2 272 -102 583 89 0 0 chr12 117256957 117257036 -27025453 - MER75B DNA T2_type -164 79 1 32 0 0 23 chr12 117257224 117257244 -27025245 + AT_rich Low_complexity Low_complexity 1 20 -22 1691 177 3 13 chr12 117257244 117257543 -27024946 - AluJb SINE Alu -16 296 1 32 0 0 23 chr12 117257543 117257565 -27024924 + AT_rich Low_complexity Low_complexity 20 42 0 1919 148 30 0 chr12 117257765 117258068 -27024421 - AluJb SINE Alu 0 312 1 2461 57 23 3 chr12 117258162 117258461 -27024028 - AluY SINE Alu -6 305 1 4234 152 48 57 chr12 117258535 117258931 -27023558 - L1MB3 LINE L1 -1 6182 5784 2221 129 0 3 chr12 117258931 117259234 -27023255 - AluSx SINE Alu -10 302 1 4234 152 48 57 chr12 117259234 117259708 -27022781 - L1MB3 LINE L1 -399 5784 5312 2221 101 17 3 chr12 117259708 117260004 -27022485 - AluSc SINE Alu -8 301 2 4234 152 48 57 chr12 117260004 117260090 -27022399 - L1MB3 LINE L1 -871 5312 5227 1718 166 3 51 chr12 117260100 117260413 -27022076 - AluSx SINE Alu -14 298 1 466 261 148 43 chr12 117260413 117260643 -27021846 - L1MD1 LINE L1 -1985 5823 5570 587 65 0 0 chr12 117260859 117260936 -27021553 - MER41B LTR ERV1 -88 547 471 680 191 0 0 chr12 117261123 117261233 -27021256 + MER58A DNA MER1_type 1 110 0 647 295 50 39 chr12 117261233 117261590 -27020899 - LTR24B LTR ERV1 -9 567 207 340 173 76 19 chr12 117261629 117261724 -27020765 - LTR24B LTR ERV1 -368 97 1 656 142 15 119 chr12 117261724 117261803 -27020686 + MER58A DNA MER1_type 105 166 -2254 1915 162 14 0 chr12 117261803 117262100 -27020389 + AluJb SINE Alu 1 301 -11 656 142 15 119 chr12 117262100 117262154 -27020335 + MER58A DNA MER1_type 166 224 0 2176 103 3 7 chr12 117262241 117262532 -27019957 + AluSg SINE Alu 5 294 -16 519 303 13 33 chr12 117262942 117263249 -27019240 - AluY SINE Alu 0 301 1 349 250 0 0 chr12 117263850 117263922 -27018567 + MIR SINE MIR 81 152 -56 2054 155 0 3 chr12 117263923 117264227 -27018262 + AluJb SINE Alu 1 303 -9 702 145 105 0 chr12 117264646 117264770 -27017719 + FLAM_C SINE Alu 7 143 0 2050 131 3 3 chr12 117264773 117265078 -27017411 + AluSq SINE Alu 1 305 0 1077 156 49 15 chr12 117265272 117265477 -27017012 - LTR54 LTR ERV1 0 510 299 1916 143 3 55 chr12 117265490 117265818 -27016671 - AluJb SINE Alu -1 311 1 698 230 111 141 chr12 117265818 117266510 -27015979 - L1MC5 LINE L1 -175 7786 7075 190 0 67 0 chr12 117266510 117266540 -27015949 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2031 144 7 3 chr12 117266545 117266843 -27015646 - AluJb SINE Alu -13 299 1 698 230 111 141 chr12 117266843 117267276 -27015213 - L1MC5 LINE L1 -890 7071 6687 389 333 25 0 chr12 117267290 117267410 -27015079 - L2 LINE L2 -609 2705 2583 200 278 0 19 chr12 117267420 117267474 -27015015 + MIR SINE MIR 202 254 -8 503 226 169 0 chr12 117267493 117267670 -27014819 - MIR SINE MIR -55 207 1 291 291 99 43 chr12 117267774 117267915 -27014574 + L2 LINE L2 3124 3272 0 1904 159 0 31 chr12 117268232 117268552 -27013937 + AluJo SINE Alu 3 312 0 250 227 0 0 chr12 117268569 117268613 -27013876 - L2 LINE L2 -10 3262 3219 419 285 32 16 chr12 117269029 117269152 -27013337 + MIR3 SINE MIR 37 161 -47 1300 166 0 65 chr12 117269205 117269452 -27013037 + AluSg/x SINE Alu 71 301 -11 226 307 73 58 chr12 117269819 117269956 -27012533 + L2 LINE L2 2953 3091 -181 1066 116 0 0 chr12 117270004 117270150 -27012339 - AluSg/x SINE Alu -33 277 132 2244 100 0 17 chr12 117270150 117270473 -27012016 - AluSq SINE Alu 0 313 1 657 198 0 9 chr12 117270646 117270762 -27011727 - FLAM_C SINE Alu -17 126 12 800 174 0 14 chr12 117270928 117271066 -27011423 - AluSx SINE Alu -165 148 13 2099 140 31 40 chr12 117271066 117271172 -27011317 - L1MB3 LINE L1 -53 6130 6025 505 272 33 67 chr12 117271172 117271521 -27010968 - L1MD1 LINE L1 -226 6016 5678 1975 154 0 25 chr12 117271521 117271840 -27010649 - AluJb SINE Alu -1 311 1 598 248 173 15 chr12 117271961 117272163 -27010326 + MIR SINE MIR 5 238 -24 2168 126 10 0 chr12 117272182 117272483 -27010006 - AluSx SINE Alu -8 304 1 281 268 83 57 chr12 117273093 117273250 -27009239 + L2 LINE L2 3106 3266 -6 260 113 75 0 chr12 117273311 117273364 -27009125 - L1MB3 LINE L1 0 6183 6127 1941 108 93 0 chr12 117273388 117273657 -27008832 + AluSx SINE Alu 1 294 -18 580 193 0 35 chr12 117273657 117273771 -27008718 - FLAM_A SINE Alu -29 113 4 810 170 21 18 chr12 117273818 117274001 -27008488 - L1MB5 LINE L1 -34 6146 5950 912 135 0 8 chr12 117274395 117274528 -27007961 - FLAM_C SINE Alu -1 132 1 738 150 206 11 chr12 117274616 117274796 -27007693 - MER20 DNA MER1_type 0 219 5 281 262 267 14 chr12 117274809 117275030 -27007459 - L2 LINE L2 -233 3080 2804 706 144 119 0 chr12 117275149 117275267 -27007222 + FLAM_C SINE Alu 1 132 -1 193 176 0 0 chr12 117275507 117275541 -27006948 + MIR SINE MIR 197 230 -32 396 283 21 41 chr12 117276123 117276268 -27006221 - MIR SINE MIR -58 204 63 729 237 10 31 chr12 117276348 117276542 -27005947 - MIR SINE MIR -32 230 41 224 271 174 14 chr12 117276604 117276748 -27005741 + MIR3 SINE MIR 16 182 -26 2109 134 3 3 chr12 117278316 117278614 -27003875 - AluSx SINE Alu -11 301 4 545 195 87 34 chr12 117278626 117278775 -27003714 - MIR3 SINE MIR -47 161 5 1738 164 14 28 chr12 117279224 117279510 -27002979 + AluJb SINE Alu 15 296 -16 316 177 16 0 chr12 117279510 117279572 -27002917 + MLT1A2 LTR MaLR 312 374 0 35 0 0 22 chr12 117279586 117279603 -27002886 + AT_rich Low_complexity Low_complexity 1 17 -28 1984 143 3 0 chr12 117279603 117279890 -27002599 + AluJb SINE Alu 1 288 -24 35 0 0 22 chr12 117279890 117279918 -27002571 + AT_rich Low_complexity Low_complexity 17 45 0 497 264 123 18 chr12 117279934 117279994 -27002495 - HAL1 LINE L1 -23 2484 2432 1819 132 16 53 chr12 117279994 117280297 -27002192 + AluJo SINE Alu 2 293 -19 497 264 123 18 chr12 117280297 117280456 -27002033 - HAL1 LINE L1 -75 2432 2242 277 170 0 0 chr12 117280568 117280615 -27001874 - MLT2B2 LTR ERVL 0 554 508 21 57 0 0 chr12 117280623 117280658 -27001831 + AT_rich Low_complexity Low_complexity 1 35 0 1476 259 50 44 chr12 117280673 117281064 -27001425 - MLT2B2 LTR ERVL -52 463 67 2281 97 0 0 chr12 117281064 117281353 -27001136 + AluY SINE Alu 6 294 -17 1476 259 50 44 chr12 117281353 117281417 -27001072 - MLT2B2 LTR ERVL -448 67 5 1477 152 0 0 chr12 117281420 117281637 -27000852 + AluJb SINE Alu 1 217 -95 2680 23 0 7 chr12 117282400 117282704 -26999785 - AluY SINE Alu -9 302 1 2383 79 10 0 chr12 117282854 117283146 -26999343 + AluSp SINE Alu 1 295 -18 280 326 23 0 chr12 117284367 117284453 -26998036 - MIR3 SINE MIR -28 180 93 183 291 68 39 chr12 117284916 117285019 -26997470 + MIR SINE MIR 62 167 -95 646 250 71 0 chr12 117285238 117285422 -26997067 + Charlie1 DNA MER1_type 30 226 -2535 235 91 0 0 chr12 117285404 117285448 -26997041 - Alu SINE Alu -2 300 257 * 362 305 0 14 chr12 117285620 117285761 -26996728 - L1M4 LINE L1 -5007 1535 1397 378 210 37 0 chr12 117286398 117286479 -26996010 - MIR3 SINE MIR -38 170 87 523 309 129 9 chr12 117286992 117287225 -26995264 + MIR SINE MIR 2 262 0 2043 145 0 13 chr12 117287258 117287569 -26994920 - AluJo SINE Alu -5 307 1 258 190 0 52 chr12 117287576 117287634 -26994855 + L2 LINE L2 3171 3225 -88 745 226 47 5 chr12 117287634 117287824 -26994665 - L1ME1 LINE L1 -58 6108 5911 1953 166 25 22 chr12 117287824 117288180 -26994309 + MSTC LTR MaLR 1 357 -71 566 189 101 108 chr12 117288181 117288252 -26994237 - L1ME1 LINE L1 -271 5895 5825 1701 156 20 30 chr12 117288252 117288547 -26993942 - AluJb SINE Alu -20 292 1 566 189 101 108 chr12 117288547 117288789 -26993700 - L1ME1 LINE L1 -341 5825 5594 338 304 72 52 chr12 117288817 117289067 -26993422 - L2 LINE L2 -50 3263 3009 2339 100 0 6 chr12 117289273 117289584 -26992905 - AluSx SINE Alu -3 309 1 194 255 53 32 chr12 117289664 117289758 -26992731 - L2 LINE L2 -747 2567 2472 1813 75 36 159 chr12 117289974 117290307 -26992182 + AluSx SINE Alu 1 292 -10 230 167 62 0 chr12 117290356 117290404 -26992085 - Alu SINE Alu -249 53 3 849 175 0 7 chr12 117290494 117290648 -26991841 - FRAM SINE Alu -30 146 1 1989 117 53 0 chr12 117293066 117293348 -26989141 + AluSx SINE Alu 1 297 -15 189 292 0 0 chr12 117294207 117294255 -26988234 - L3 LINE CR1 -108 1469 1422 282 254 23 119 chr12 117294323 117294378 -26988111 + L1ME LINE L1 5501 5560 -561 2250 67 88 0 chr12 117294378 117294661 -26987828 - AluSc SINE Alu -1 308 1 282 254 23 119 chr12 117294661 117294695 -26987794 + L1ME LINE L1 5560 5596 -525 1692 177 0 13 chr12 117294695 117294995 -26987494 + AluJo SINE Alu 1 296 -16 282 254 23 119 chr12 117294995 117295081 -26987408 + L1ME LINE L1 5596 5660 -461 1047 161 41 41 chr12 117295379 117295597 -26986892 - MER20 DNA MER1_type -1 218 1 1002 133 44 0 chr12 117295603 117295761 -26986728 + AluSg/x SINE Alu 137 301 -11 2408 94 0 13 chr12 117296219 117296527 -26985962 - AluSx SINE Alu -8 304 1 350 137 0 0 chr12 117296540 117296591 -26985898 + MER52C LTR ERV1 1 51 -1227 201 121 0 0 chr12 117296888 117296921 -26985568 + (T)n Simple_repeat Simple_repeat 1 33 0 2040 119 19 19 chr12 117297308 117297619 -26984870 - AluSx SINE Alu -1 311 1 455 272 171 18 chr12 117297695 117297923 -26984566 + L2 LINE L2 2364 2626 -688 2077 124 10 3 chr12 117298194 117298485 -26984004 - AluSx SINE Alu -19 293 1 691 251 34 11 chr12 117299449 117299624 -26982865 - MIR SINE MIR -70 192 14 1908 175 42 15 chr12 117299813 117299888 -26982601 + MER7A DNA MER2_type 2 74 -2964 1591 124 124 19 chr12 117299888 117300148 -26982341 + AluSg1 SINE Alu 1 289 -15 405 102 0 0 chr12 117300148 117300207 -26982282 + (TA)n Simple_repeat Simple_repeat 2 60 0 1908 175 42 15 chr12 117300212 117300473 -26982016 + MER7A DNA MER2_type 74 345 -1 2082 131 0 13 chr12 117300478 117300776 -26981713 - AluJb SINE Alu -18 294 1 2449 92 10 0 chr12 117300790 117301096 -26981393 - AluSp SINE Alu -4 309 1 207 0 0 0 chr12 117301122 117301145 -26981344 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 338 349 123 14 chr12 117301290 117301502 -26980987 - L1MC4a LINE L1 -1909 5899 5665 226 137 59 39 chr12 117301508 117301559 -26980930 + Tigger5 DNA MER2_type 6 57 -2266 1858 174 10 3 chr12 117301623 117301927 -26980562 + AluJb SINE Alu 1 306 -6 1637 198 4 7 chr12 117301927 117302203 -26980286 - AluJo SINE Alu -35 277 1 1318 144 38 49 chr12 117302203 117302466 -26980023 + Tigger5 DNA MER2_type 2064 2323 0 2304 59 62 14 chr12 117302773 117303061 -26979428 + AluSc SINE Alu 1 302 -7 1442 121 10 0 chr12 117304817 117305015 -26977474 - AluSg/x SINE Alu 0 310 111 43 56 0 0 chr12 117305398 117305469 -26977020 + AT_rich Low_complexity Low_complexity 1 71 0 351 297 9 27 chr12 117305479 117305590 -26976899 - L1MC4 LINE L1 -1343 6699 6591 2097 73 80 28 chr12 117305692 117305981 -26976508 + AluSp SINE Alu 1 304 -9 1255 187 116 16 chr12 117306108 117306418 -26976071 - MER58B DNA MER1_type 0 341 1 1198 201 34 0 chr12 117307251 117307460 -26975029 - AluJo SINE Alu -12 300 85 259 253 80 0 chr12 117307666 117307741 -26974748 - MER5B DNA MER1_type -38 140 60 1745 140 24 61 chr12 117307834 117308152 -26974337 + AluJo SINE Alu 1 307 0 263 291 219 32 chr12 117308402 117308604 -26973885 - MIR SINE MIR -16 246 3 213 39 0 0 chr12 117310316 117310342 -26972147 + (T)n Simple_repeat Simple_repeat 1 26 0 2216 127 16 0 chr12 117310354 117310661 -26971828 + AluSx SINE Alu 1 312 0 362 205 26 0 chr12 117310972 117311050 -26971439 + MER81 DNA DNA 3 82 -32 1963 43 0 17 chr12 117311088 117311321 -26971168 - AluY SINE Alu -82 229 1 2345 124 0 0 chr12 117311678 117311985 -26970504 - AluSx SINE Alu -5 307 1 413 259 64 61 chr12 117312342 117312530 -26969959 - MIR SINE MIR -65 143 5 2192 121 3 0 chr12 117312580 117312877 -26969612 + AluSx SINE Alu 1 298 -14 2204 113 7 0 chr12 117312890 117313182 -26969307 + AluSx SINE Alu 5 298 -14 362 136 15 0 chr12 117313540 117313606 -26968883 + MER103 DNA DNA 59 125 -41 318 148 0 0 chr12 117313802 117313856 -26968633 + (TG)n Simple_repeat Simple_repeat 2 55 0 331 337 269 0 chr12 117314035 117314210 -26968279 + MIR SINE MIR 33 254 -8 2323 111 0 0 chr12 117314211 117314508 -26967981 - AluSx SINE Alu -12 300 4 208 189 0 0 chr12 117314694 117314731 -26967758 - L2 LINE L2 -96 3217 3181 382 232 96 48 chr12 117315028 117315153 -26967336 - L2 LINE L2 -9 3304 3174 316 308 38 66 chr12 117315448 117315600 -26966889 + MIR SINE MIR 56 202 -60 1553 159 144 0 chr12 117315600 117315864 -26966625 + AluJo SINE Alu 1 302 0 316 308 38 66 chr12 117315864 117315922 -26966567 + MIR SINE MIR 202 260 -2 21 0 0 0 chr12 117316151 117316172 -26966317 + AT_rich Low_complexity Low_complexity 1 21 0 2588 54 3 0 chr12 117316172 117316468 -26966021 + AluY SINE Alu 1 297 -14 225 65 0 0 chr12 117316633 117316664 -26965825 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2238 118 0 3 chr12 117316681 117316977 -26965512 + AluSx SINE Alu 1 295 -17 1625 117 53 57 chr12 117316977 117317260 -26965229 - AluJb SINE Alu -30 282 1 667 230 112 142 chr12 117317260 117317952 -26964537 - L1MC5 LINE L1 -177 7784 7073 190 0 67 0 chr12 117317952 117317982 -26964507 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2031 144 7 3 chr12 117317987 117318285 -26964204 - AluJb SINE Alu -13 299 1 667 230 112 142 chr12 117318285 117318718 -26963771 - L1MC5 LINE L1 -892 7069 6687 389 333 25 0 chr12 117318732 117318852 -26963637 - L2 LINE L2 -609 2705 2583 200 278 0 19 chr12 117318862 117318916 -26963573 + MIR SINE MIR 202 254 -8 503 226 169 0 chr12 117318935 117319112 -26963377 - MIR SINE MIR -55 207 1 291 291 99 43 chr12 117319216 117319357 -26963132 + L2 LINE L2 3124 3272 0 1904 159 0 31 chr12 117319674 117319994 -26962495 + AluJo SINE Alu 3 312 0 250 227 0 0 chr12 117320011 117320055 -26962434 - L2 LINE L2 -10 3262 3219 419 285 32 16 chr12 117320466 117320589 -26961900 + MIR3 SINE MIR 37 161 -47 1346 158 0 65 chr12 117320642 117320889 -26961600 + AluSg/x SINE Alu 71 301 -11 226 307 73 58 chr12 117321256 117321393 -26961096 + L2 LINE L2 2953 3091 -181 1066 116 0 0 chr12 117321441 117321587 -26960902 - AluSg/x SINE Alu -33 279 134 2244 100 0 17 chr12 117321587 117321910 -26960579 - AluSq SINE Alu 0 313 1 800 186 0 0 chr12 117322083 117322207 -26960282 - FLAM_C SINE Alu -17 126 3 689 153 119 0 chr12 117322269 117322387 -26960102 + FLAM_C SINE Alu 1 132 -1 193 176 0 0 chr12 117322627 117322661 -26959828 + MIR SINE MIR 197 230 -32 396 283 21 41 chr12 117323243 117323388 -26959101 - MIR SINE MIR -58 204 63 729 237 10 31 chr12 117323468 117323662 -26958827 - MIR SINE MIR -32 230 41 224 271 174 14 chr12 117323724 117323868 -26958621 + MIR3 SINE MIR 16 182 -26 2319 107 3 3 chr12 117325436 117325736 -26956753 - AluSx SINE Alu -12 300 1 331 152 0 45 chr12 117325885 117325951 -26956538 - MIR SINE MIR -109 153 91 267 31 0 0 chr12 117326506 117326538 -26955951 + (TC)n Simple_repeat Simple_repeat 1 32 0 1784 155 0 0 chr12 117326538 117326802 -26955687 - AluJb SINE Alu -48 264 1 252 0 0 0 chr12 117327108 117327136 -26955353 + (TA)n Simple_repeat Simple_repeat 2 29 0 180 77 0 0 chr12 117327136 117327162 -26955327 + (T)n Simple_repeat Simple_repeat 1 26 0 892 208 6 11 chr12 117327176 117327354 -26955135 - AluJb SINE Alu 0 312 136 262 346 54 8 chr12 117327355 117327485 -26955004 - L2 LINE L2 -13 3259 3124 1196 193 9 5 chr12 117327991 117328209 -26954280 + MER20 DNA MER1_type 1 219 0 5219 181 58 65 chr12 117328258 117329080 -26953409 - L1M3 LINE L1 -496 5684 4857 2518 73 0 7 chr12 117329080 117329382 -26953107 - AluY SINE Alu -11 300 1 5219 181 58 65 chr12 117329382 117330414 -26952075 - L1M3 LINE L1 -1323 4857 3849 2091 132 0 0 chr12 117330649 117330944 -26951545 + AluSx SINE Alu 1 295 -17 558 182 0 0 chr12 117331068 117331156 -26951333 - AluSg/x SINE Alu -22 287 200 2211 118 3 19 chr12 117331160 117331475 -26951014 - AluSx SINE Alu -2 310 1 273 299 149 0 chr12 117331579 117331686 -26950803 - L2 LINE L2 -1 3312 3190 1824 132 71 0 chr12 117331864 117332144 -26950345 + AluSg SINE Alu 1 300 -10 1564 167 48 6 chr12 117332148 117332459 -26950030 - L1MB8 LINE L1 -9 6169 5846 263 264 99 11 chr12 117332468 117332559 -26949930 - MIR SINE MIR -78 130 32 1203 21 0 0 chr12 117333487 117333629 -26948860 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 2228 141 0 0 chr12 117333646 117333951 -26948538 + AluSx SINE Alu 1 305 -7 1973 140 26 23 chr12 117334159 117334467 -26948022 - AluJo SINE Alu -3 309 1 198 0 0 0 chr12 117334467 117334489 -26948000 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 324 248 27 40 chr12 117334693 117334842 -26947647 - L1ME4a LINE L1 -11 6110 5964 545 195 87 34 chr12 117335079 117335228 -26947261 + MIR3 SINE MIR 5 161 -47 2020 166 0 3 chr12 117335240 117335542 -26946947 + AluJo SINE Alu 4 304 -8 2387 111 3 0 chr12 117335831 117336138 -26946351 - AluSx SINE Alu -4 308 1 350 250 0 0 chr12 117336378 117336450 -26946039 + MIR SINE MIR 81 152 -56 2063 154 0 3 chr12 117336451 117336756 -26945733 + AluJb SINE Alu 1 304 -8 702 145 105 0 chr12 117337175 117337299 -26945190 + FLAM_C SINE Alu 7 143 0 2021 135 3 3 chr12 117337302 117337606 -26944883 + AluSx SINE Alu 1 304 0 1300 192 128 75 chr12 117337799 117338014 -26944475 - LTR54B LTR ERV1 -1 497 295 2301 107 0 25 chr12 117338014 117338332 -26944157 - AluSg SINE Alu 0 310 1 1300 192 128 75 chr12 117338332 117338584 -26943905 - LTR54B LTR ERV1 -203 295 5 1332 153 21 0 chr12 117338586 117338822 -26943667 - L1PB4 LINE L1 -7 6149 5909 2090 113 0 33 chr12 117338990 117339290 -26943199 + AluSg SINE Alu 1 290 -20 521 249 38 135 chr12 117339737 117339863 -26942626 + L2 LINE L2 2887 3024 -289 826 142 136 37 chr12 117339863 117339943 -26942546 + MER45A DNA AcHobo 1 72 -1509 1922 181 0 0 chr12 117339943 117340246 -26942243 - AluJb SINE Alu -9 303 1 826 142 136 37 chr12 117340246 117340327 -26942162 + MER45A DNA AcHobo 72 178 0 521 249 38 135 chr12 117340327 117340494 -26941995 + L2 LINE L2 3024 3206 -107 243 0 0 0 chr12 117340494 117340521 -26941968 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1577 157 20 68 chr12 117340522 117340816 -26941673 - AluSx SINE Alu -32 280 1 521 249 38 135 chr12 117340816 117340992 -26941497 + L2 LINE L2 3205 3313 0 354 162 0 0 chr12 117341057 117341131 -26941358 + (TGAA)n Simple_repeat Simple_repeat 4 77 0 466 195 149 12 chr12 117341749 117341984 -26940505 + MER46C DNA MER2_type 24 335 -3 264 204 37 0 chr12 117341984 117342038 -26940451 + MIR SINE MIR 197 252 -10 234 128 0 0 chr12 117342064 117342103 -26940386 + (TG)n Simple_repeat Simple_repeat 2 40 0 207 239 22 0 chr12 117342278 117342324 -26940165 - MIR3 SINE MIR -51 157 111 787 131 0 0 chr12 117342748 117342855 -26939634 + FRAM SINE Alu 40 146 -30 230 306 65 37 chr12 117342983 117343091 -26939398 - L2 LINE L2 0 3272 3162 533 294 105 18 chr12 117343160 117343388 -26939101 + MIR SINE MIR 13 260 -2 281 297 0 0 chr12 117343452 117343526 -26938963 + MIR SINE MIR 107 180 -82 2462 89 0 19 chr12 117344207 117344554 -26937935 - AluSg SINE Alu 0 341 1 521 118 0 0 chr12 117345137 117345213 -26937276 + MADE1 DNA Mariner 1 76 -4 2048 150 13 0 chr12 117345908 117346215 -26936274 - AluJb SINE Alu -1 311 1 2136 132 0 7 chr12 117346250 117346560 -26935929 - AluSx SINE Alu -4 308 1 421 125 0 0 chr12 117346574 117346646 -26935843 - L1MA4A LINE L1 -13 6290 6219 721 138 7 35 chr12 117346646 117346791 -26935698 - LTR49 LTR ERV1 0 595 455 2010 139 17 0 chr12 117346935 117347229 -26935260 - AluSx SINE Alu -13 299 1 380 233 248 16 chr12 117347246 117347375 -26935114 + MIR SINE MIR 33 191 -71 280 219 103 55 chr12 117348749 117348895 -26933594 - L1ME4a LINE L1 -28 6093 5941 1330 197 45 26 chr12 117348968 117349277 -26933212 + MER58B DNA MER1_type 27 341 0 1104 139 6 0 chr12 117349350 117349516 -26932973 + FAM SINE Alu 1 167 -8 1793 180 10 3 chr12 117349521 117349810 -26932679 + AluJo SINE Alu 3 293 -19 265 333 54 39 chr12 117350139 117350268 -26932221 - MIR SINE MIR 0 262 132 287 222 56 78 chr12 117350418 117350508 -26931981 + MIR SINE MIR 49 137 -71 1798 144 41 0 chr12 117350541 117350842 -26931647 - AluJb SINE Alu 0 312 1 472 227 64 43 chr12 117351249 117351390 -26931099 + MER5B DNA MER1_type 1 144 -34 1383 219 14 46 chr12 117351416 117351671 -26930818 - MER58B DNA MER1_type -2081 339 77 1796 181 20 0 chr12 117351671 117351963 -26930526 + AluJo SINE Alu 1 298 -14 2211 132 0 3 chr12 117351963 117352274 -26930215 + AluSx SINE Alu 1 310 -2 1383 219 14 46 chr12 117352274 117352364 -26930125 - MER58B DNA MER1_type -2341 79 4 392 274 43 8 chr12 117352754 117352871 -26929618 - MIR SINE MIR -109 153 33 1032 161 75 0 chr12 117352876 117353075 -26929414 - MER20 DNA MER1_type 0 219 6 2465 84 0 0 chr12 117353079 117353377 -26929112 + AluSx SINE Alu 1 298 -14 411 277 77 19 chr12 117353528 117353683 -26928806 + MIR SINE MIR 29 192 -70 825 133 14 3 chr12 117354300 117354462 -26928027 + L1P5 LINE L1 5505 5669 -485 1991 116 4 0 chr12 117354548 117354840 -26927649 + AluSx SINE Alu 16 308 0 816 123 8 0 chr12 117354840 117354970 -26927519 + L1P5 LINE L1 5661 5791 -365 263 28 28 0 chr12 117355003 117355039 -26927450 + (TG)n Simple_repeat Simple_repeat 2 38 0 2097 136 0 7 chr12 117355247 117355549 -26926940 - AluSx SINE Alu -11 301 2 2726 264 104 38 chr12 117355551 117356190 -26926299 + HAL1 LINE L1 140 736 -1771 2326 101 0 3 chr12 117356190 117356496 -26925993 - AluSq SINE Alu -8 305 1 2726 264 104 38 chr12 117356496 117356910 -26925579 + HAL1 LINE L1 736 1121 -1386 2146 140 0 0 chr12 117356910 117357221 -26925268 - AluSx SINE Alu 0 312 1 2726 264 104 38 chr12 117357221 117357509 -26924980 + HAL1 LINE L1 1121 1580 -927 2100 146 3 0 chr12 117357509 117357803 -26924686 - AluSx SINE Alu -17 295 1 2726 264 104 38 chr12 117357803 117357859 -26924630 + HAL1 LINE L1 1580 1631 -876 810 182 0 0 chr12 117357859 117357980 -26924509 - FRAM SINE Alu -55 121 1 1137 140 0 0 chr12 117357989 117358153 -26924336 - AluSg/x SINE Alu -12 300 137 629 188 42 7 chr12 117358162 117358306 -26924183 + HAL1 LINE L1 1680 1828 -679 635 281 21 21 chr12 117358379 117358617 -26923872 + HAL1 LINE L1 1690 1927 -580 862 157 0 14 chr12 117358620 117358760 -26923729 - FLAM_C SINE Alu -5 138 1 478 241 93 88 chr12 117358803 117359180 -26923309 + HAL1 LINE L1 1988 2366 -141 800 115 74 8 chr12 117359275 117359397 -26923092 + FLAM_C SINE Alu 1 130 -3 1278 201 148 4 chr12 117359678 117359941 -26922548 + AluJb SINE Alu 2 302 0 292 344 107 0 chr12 117360392 117360523 -26921966 + MIR SINE MIR 108 252 -10 1867 146 3 55 chr12 117360572 117360880 -26921609 + AluJb SINE Alu 1 292 -20 351 65 0 0 chr12 117360880 117360926 -26921563 + (TA)n Simple_repeat Simple_repeat 2 47 0 180 0 0 0 chr12 117360939 117360959 -26921530 + (TCCA)n Simple_repeat Simple_repeat 4 23 0 235 254 16 16 chr12 117361698 117361761 -26920728 + L2 LINE L2 2648 2710 -604 1881 158 0 20 chr12 117361813 117362110 -26920379 + AluJo SINE Alu 9 299 -13 2146 124 6 19 chr12 117362130 117362444 -26920045 + AluSx SINE Alu 3 312 0 359 296 26 26 chr12 117362597 117362712 -26919777 - MIR SINE MIR -117 145 31 254 281 125 42 chr12 117362704 117363102 -26919387 + L2 LINE L2 2732 3228 -85 * 1688 115 0 0 chr12 117363418 117363636 -26918853 - AluSx SINE Alu -94 218 1 236 262 0 0 chr12 117363645 117363706 -26918783 - L1ME LINE L1 -462 5659 5599 1887 139 38 38 chr12 117363723 117364090 -26918399 + L1MB2 LINE L1 5803 6169 -2 1800 167 0 53 chr12 117364102 117364425 -26918064 - AluJb SINE Alu -6 306 1 2319 108 0 9 chr12 117364606 117364921 -26917568 - AluSx SINE Alu 0 312 1 863 133 0 0 chr12 117365372 117365492 -26916997 - FLAM_C SINE Alu -12 121 2 4220 122 25 2 chr12 117365829 117366568 -26915921 + L1PA14 LINE L1 5344 6129 -32 1094 226 5 5 chr12 117366856 117367068 -26915421 + MER58A DNA MER1_type 9 220 -4 24 0 0 0 chr12 117367640 117367664 -26914825 + AT_rich Low_complexity Low_complexity 1 24 0 671 254 75 55 chr12 117367670 117367849 -26914640 - L1ME4a LINE L1 -18 6103 5929 1580 168 16 63 chr12 117367849 117368152 -26914337 + AluJo SINE Alu 10 298 -14 671 254 75 55 chr12 117368152 117368449 -26914040 - L1ME4a LINE L1 -192 5929 5617 1981 166 0 10 chr12 117368676 117368989 -26913500 - AluJo SINE Alu -1 311 2 2101 138 3 0 chr12 117369892 117370188 -26912301 - AluSx SINE Alu -15 297 1 678 306 91 57 chr12 117370308 117370779 -26911710 - L1ME4a LINE L1 -115 6006 5520 723 248 68 0 chr12 117370865 117371087 -26911402 - L1MD3 LINE L1 -36 7959 7723 602 159 0 28 chr12 117371109 117371216 -26911273 - L1MC1 LINE L1 0 6333 6230 1922 145 121 3 chr12 117371857 117372195 -26910294 - MER83B LTR ERV1 0 378 1 240 273 47 31 chr12 117372588 117372716 -26909773 + L3 LINE CR1 1333 1462 -115 1907 163 0 13 chr12 117372761 117373062 -26909427 - AluJo SINE Alu -15 297 1 590 248 37 22 chr12 117373567 117373797 -26908692 - MER106B DNA MER1_type -1 1058 1 258 167 0 0 chr12 117373848 117373902 -26908587 - L1MA3 LINE L1 0 6305 6252 802 68 0 0 chr12 117373902 117374005 -26908484 - AluSg/x SINE Alu -5 304 202 5883 131 19 49 chr12 117374005 117374490 -26907999 - L1MA3 LINE L1 -68 6237 5739 2398 120 0 0 chr12 117374490 117374799 -26907690 - AluSx SINE Alu -3 309 1 5883 131 19 49 chr12 117374799 117375107 -26907382 - L1MA3 LINE L1 -566 5739 5423 2256 114 3 0 chr12 117375107 117375414 -26907075 - AluY SINE Alu -3 308 1 5883 131 19 49 chr12 117375414 117375642 -26906847 - L1MA3 LINE L1 -882 5423 5190 1848 183 0 7 chr12 117375642 117375937 -26906552 - AluJo SINE Alu -15 297 5 5883 131 19 49 chr12 117375937 117377051 -26905438 - L1MA3 LINE L1 -1115 5190 4152 202 194 0 0 chr12 117377059 117377095 -26905394 + CT-rich Low_complexity Low_complexity 1 36 0 226 121 0 0 chr12 117377098 117377131 -26905358 - Alu SINE Alu -189 113 81 976 212 134 95 chr12 117377189 117377326 -26905163 - L1MC4 LINE L1 0 8042 7912 2401 94 0 0 chr12 117377326 117377624 -26904865 - AluSx SINE Alu -14 298 1 976 212 134 95 chr12 117377624 117377978 -26904511 - L1MC4 LINE L1 -130 7912 7516 1867 153 0 17 chr12 117377978 117378266 -26904223 - AluJb SINE Alu -12 300 18 976 212 134 95 chr12 117378266 117378438 -26904051 - L1MC4 LINE L1 -526 7516 7352 222 247 129 11 chr12 117379073 117379166 -26903323 - MIR3 SINE MIR -16 192 89 2492 97 0 0 chr12 117379191 117379502 -26902987 - AluSx SINE Alu -1 311 1 333 250 50 17 chr12 117379998 117380118 -26902371 - LTR67 LTR ERVL 0 557 434 471 194 15 15 chr12 117380324 117380458 -26902031 + GA-rich Low_complexity Low_complexity 3 136 0 1864 146 4 0 chr12 117380703 117381024 -26901465 - AluJo SINE Alu 0 329 8 858 112 5 48 chr12 117381450 117381638 -26900851 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 236 158 0 0 chr12 117381638 117381676 -26900813 + C-rich Low_complexity Low_complexity 3 40 0 517 206 17 11 chr12 117381676 117381851 -26900638 + CT-rich Low_complexity Low_complexity 3 178 0 413 266 37 9 chr12 117382805 117382914 -26899575 + MER81 DNA DNA 1 112 -2 2383 113 0 0 chr12 117383100 117383411 -26899078 + AluSq SINE Alu 1 311 -2 1492 87 5 0 chr12 117383474 117383659 -26898830 - AluSp SINE Alu -127 186 1 1952 168 7 0 chr12 117383887 117384197 -26898292 - AluJo SINE Alu 0 312 1 602 248 71 38 chr12 117384244 117384482 -26898007 - MIR SINE MIR 0 262 17 2277 120 0 0 chr12 117384484 117384785 -26897704 - AluSx SINE Alu -11 301 1 1189 176 4 40 chr12 117385657 117385884 -26896605 - MER20 DNA MER1_type 0 219 1 1746 156 3 52 chr12 117385927 117386234 -26896255 - AluJo SINE Alu -18 294 3 2293 113 0 0 chr12 117386489 117386789 -26895700 - AluSx SINE Alu -12 300 1 967 191 135 147 chr12 117387218 117387451 -26895038 - MLT1C LTR MaLR 0 467 233 2126 128 0 3 chr12 117387451 117387758 -26894731 - AluSx SINE Alu 0 312 11 967 191 135 147 chr12 117387758 117387774 -26894715 - MLT1C LTR MaLR -234 233 218 381 43 0 0 chr12 117387774 117387821 -26894668 + (TG)n Simple_repeat Simple_repeat 2 48 0 967 191 135 147 chr12 117387821 117387882 -26894607 - MLT1C LTR MaLR -249 218 158 351 0 0 0 chr12 117387882 117387921 -26894568 + (TG)n Simple_repeat Simple_repeat 2 40 0 967 191 135 147 chr12 117387921 117388113 -26894376 - MLT1C LTR MaLR -309 158 4 287 283 154 12 chr12 117388754 117388994 -26893495 - L1ME4a LINE L1 -9 6112 5839 711 259 72 0 chr12 117389034 117389227 -26893262 + MER3 DNA MER1_type 3 209 0 1815 227 3 6 chr12 117389554 117389920 -26892569 - MLT1A1 LTR MaLR 0 365 1 243 282 250 8 chr12 117390774 117390898 -26891591 - L2 LINE L2 -22 3250 3097 1962 160 0 10 chr12 117391157 117391469 -26891020 - AluJb SINE Alu -3 309 1 26 0 0 0 chr12 117391673 117391699 -26890790 + AT_rich Low_complexity Low_complexity 1 26 0 1325 172 10 5 chr12 117391745 117391954 -26890535 + AluJb SINE Alu 59 268 -44 1347 137 0 24 chr12 117391956 117392161 -26890328 - AluJo SINE Alu -76 236 37 2572 62 0 10 chr12 117392177 117392484 -26890005 + AluY SINE Alu 1 304 -7 2431 55 0 70 chr12 117393003 117393331 -26889158 + AluY SINE Alu 1 305 -6 332 215 13 13 chr12 117393352 117393431 -26889058 + L1MC3 LINE L1 7668 7746 -39 1804 174 10 7 chr12 117393456 117393755 -26888734 - AluSx SINE Alu -12 300 1 622 294 103 0 chr12 117393837 117394031 -26888458 - MIR SINE MIR -6 256 43 530 263 21 32 chr12 117394109 117394295 -26888194 - MIR SINE MIR -70 192 9 282 216 294 0 chr12 117394574 117394676 -26887813 + MIR SINE MIR 120 251 -11 530 296 36 40 chr12 117395071 117395321 -26887168 + L2 LINE L2 2650 2898 -416 282 188 208 7 chr12 117395447 117395591 -26886898 - L1MD3 LINE L1 0 7994 7613 2278 96 3 3 chr12 117395595 117395886 -26886603 - AluSx SINE Alu -21 291 1 274 143 0 65 chr12 117395918 117395995 -26886494 - L1MC3 LINE L1 -101 7684 7613 615 147 130 3 chr12 117396035 117396114 -26886375 - L1MC3 LINE L1 -114 7673 7605 2670 172 26 8 chr12 117396114 117396609 -26885880 - L1MB3 LINE L1 -1 6182 5679 615 147 130 3 chr12 117396609 117396690 -26885799 - L1MC3 LINE L1 -182 7605 7504 569 240 0 45 chr12 117396755 117396909 -26885580 + L2 LINE L2 3164 3310 -3 391 248 26 53 chr12 117397061 117397174 -26885315 + L2 LINE L2 3204 3313 0 22 0 0 0 chr12 117397224 117397246 -26885243 + AT_rich Low_complexity Low_complexity 1 22 0 2671 138 10 33 chr12 117397307 117397543 -26884946 - L1MA3 LINE L1 -1 6304 6083 2473 92 0 0 chr12 117397543 117397846 -26884643 - AluSq SINE Alu -10 303 1 2671 138 10 33 chr12 117397846 117398093 -26884396 - L1MA3 LINE L1 -222 6083 5832 1992 148 0 23 chr12 117398121 117398424 -26884065 - AluSx SINE Alu -15 297 2 2177 117 0 13 chr12 117398726 117399025 -26883464 - AluSx SINE Alu -17 295 1 205 178 0 22 chr12 117399058 117399103 -26883386 + G-rich Low_complexity Low_complexity 3 46 0 190 264 153 14 chr12 117399115 117399187 -26883302 + L2 LINE L2 3232 3313 0 2337 79 14 0 chr12 117399425 117399716 -26882773 + AluSc SINE Alu 1 295 -14 26 0 0 0 chr12 117400244 117400270 -26882219 + AT_rich Low_complexity Low_complexity 1 26 0 1604 117 4 4 chr12 117400296 117400527 -26881962 - AluJb SINE Alu -81 231 1 651 268 50 54 chr12 117400912 117400959 -26881530 - MIR SINE MIR -1 261 215 2216 111 0 3 chr12 117400959 117401248 -26881241 - AluSx SINE Alu -21 291 4 651 268 50 54 chr12 117401248 117401461 -26881028 - MIR SINE MIR -47 215 2 1981 129 31 0 chr12 117401489 117401775 -26880714 - AluJb SINE Alu -13 299 5 208 274 85 28 chr12 117401776 117401882 -26880607 - MIR SINE MIR -11 251 140 772 282 82 16 chr12 117401921 117402166 -26880323 + MIR SINE MIR 1 261 -1 204 97 0 0 chr12 117403035 117403066 -26879423 + (TG)n Simple_repeat Simple_repeat 2 32 0 337 289 24 0 chr12 117403066 117403149 -26879340 + L1MC4 LINE L1 6618 6702 -1340 316 322 23 0 chr12 117403082 117403169 -26879320 - L1MC4 LINE L1 -1339 6703 6615 * 207 326 0 0 chr12 117403169 117403218 -26879271 + (CA)n Simple_repeat Simple_repeat 1 49 0 322 337 0 0 chr12 117403225 117403314 -26879175 + L1MC4 LINE L1 6615 6703 -1339 319 294 0 43 chr12 117403297 117403389 -26879100 - L1MC4 LINE L1 -1340 6702 6615 * 225 299 23 0 chr12 117403393 117403480 -26879009 - L1MC4 LINE L1 -1340 6702 6614 * 227 322 0 0 chr12 117403440 117403530 -26878959 + L1MC4 LINE L1 6614 6703 -1339 384 286 0 0 chr12 117403533 117403673 -26878816 + (TA)n Simple_repeat Simple_repeat 1 140 0 247 315 0 0 chr12 117403689 117403778 -26878711 + L1MC4 LINE L1 6615 6703 -1339 237 291 23 0 chr12 117403749 117403835 -26878654 - L1MC4 LINE L1 -1340 6702 6615 * 225 178 0 0 chr12 117403836 117403881 -26878608 + (TA)n Simple_repeat Simple_repeat 1 45 0 1932 111 4 0 chr12 117403904 117404157 -26878332 + AluSx SINE Alu 1 254 -58 619 130 78 0 chr12 117404497 117404612 -26877877 + L1MB7 LINE L1 5795 5918 -256 198 0 0 0 chr12 117404614 117404636 -26877853 + (T)n Simple_repeat Simple_repeat 1 22 0 1285 125 0 16 chr12 117404640 117404824 -26877665 - AluSx SINE Alu -131 181 1 1365 169 8 26 chr12 117404825 117405091 -26877398 + L1MB7 LINE L1 5908 6168 -16 3728 123 8 0 chr12 117405518 117406040 -26876449 - MER1A DNA MER1_type 0 527 2 248 353 78 0 chr12 117406293 117406395 -26876094 + MIR SINE MIR 18 127 -81 1877 102 0 0 chr12 117406399 117406635 -26875854 - AluSx SINE Alu -76 236 1 2284 89 0 20 chr12 117406868 117407171 -26875318 - AluY SINE Alu -14 297 1 1879 157 3 23 chr12 117407244 117407549 -26874940 + AluJo SINE Alu 1 299 -13 2065 153 7 0 chr12 117408087 117408387 -26874102 + AluJb SINE Alu 1 302 -10 185 329 12 37 chr12 117408600 117408682 -26873807 + MIR SINE MIR 45 124 -84 2439 54 0 10 chr12 117408753 117409048 -26873441 + AluY SINE Alu 1 292 -19 1785 170 27 7 chr12 117409076 117409370 -26873119 - AluJb SINE Alu -12 300 1 479 143 55 11 chr12 117409374 117409465 -26873024 - FLAM_A SINE Alu -7 135 41 2448 80 0 0 chr12 117409491 117409791 -26872698 - AluSg SINE Alu -10 300 1 542 145 132 101 chr12 117410232 117410271 -26872218 - MER58B DNA MER1_type -2079 341 305 2318 125 0 0 chr12 117410271 117410574 -26871915 + AluSx SINE Alu 1 303 -9 542 145 132 101 chr12 117410574 117410693 -26871796 - MER58B DNA MER1_type -2115 305 178 604 167 0 0 chr12 117410694 117410790 -26871699 + FLAM_C SINE Alu 39 134 -9 2157 134 0 3 chr12 117410790 117411089 -26871400 + AluJb SINE Alu 3 300 -12 736 255 83 28 chr12 117411160 117411376 -26871113 - MIR SINE MIR -21 241 14 1960 135 44 0 chr12 117411464 117411639 -26870850 - AluJo SINE Alu -3 309 114 324 0 0 0 chr12 117411639 117411675 -26870814 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1960 135 44 0 chr12 117411675 117411795 -26870694 - AluJo SINE Alu -198 114 1 806 80 0 0 chr12 117411924 117412024 -26870465 - AluSg/x SINE Alu -11 299 200 2334 92 7 0 chr12 117412043 117412338 -26870151 - AluSx SINE Alu -15 297 1 832 180 36 57 chr12 117412339 117412533 -26869956 - MER58A DNA MER1_type -8 216 27 688 216 0 54 chr12 117412627 117412775 -26869714 + MER5B DNA MER1_type 1 140 -38 274 224 128 99 chr12 117412780 117413093 -26869396 + L1MC4 LINE L1 7719 8040 -2 191 263 0 0 chr12 117413106 117413144 -26869345 + MER5B DNA MER1_type 135 172 -6 225 0 0 0 chr12 117413805 117413830 -26868659 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2140 122 0 10 chr12 117413832 117414126 -26868363 - AluSx SINE Alu -21 291 1 476 276 39 56 chr12 117414910 117415142 -26867347 + MIR SINE MIR 20 247 -15 1965 125 0 51 chr12 117415151 117415464 -26867025 - AluJb SINE Alu -15 297 1 234 192 0 0 chr12 117415548 117415600 -26866889 + (TGAG)n Simple_repeat Simple_repeat 4 55 0 1570 151 84 28 chr12 117416747 117417032 -26865457 + AluJo SINE Alu 1 301 -11 631 248 6 19 chr12 117417291 117417452 -26865037 - MIR SINE MIR -91 171 13 207 0 0 0 chr12 117417804 117417827 -26864662 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1743 101 4 0 chr12 117417837 117418065 -26864424 - AluSq SINE Alu -46 267 39 681 188 8 0 chr12 117418435 117418563 -26863926 - FLAM_A SINE Alu -4 129 1 984 167 0 0 chr12 117418654 117418804 -26863685 - AluJo SINE Alu -162 150 1 363 224 53 0 chr12 117418804 117418880 -26863609 - MER68 LTR ERV1 -425 137 58 1440 162 47 37 chr12 117418980 117419257 -26863232 + MER33 DNA MER1_type 1 283 -2302 1841 153 16 26 chr12 117419257 117419564 -26862925 + AluJo SINE Alu 1 304 -8 1440 162 47 37 chr12 117419564 117419607 -26862882 + MER33 DNA MER1_type 283 324 0 947 220 46 18 chr12 117419615 117419689 -26862800 + MER58A DNA MER1_type 1 71 -2349 2563 78 3 0 chr12 117419689 117419997 -26862492 + AluSp SINE Alu 1 309 -4 947 220 46 18 chr12 117419997 117420140 -26862349 + MER58A DNA MER1_type 71 224 0 1944 161 3 0 chr12 117420223 117420521 -26861968 - AluJb SINE Alu -13 299 1 388 220 194 81 chr12 117420964 117421022 -26861467 - MER3 DNA MER1_type 0 209 159 2438 67 7 10 chr12 117421022 117421322 -26861167 + AluSx SINE Alu 1 299 -13 388 220 194 81 chr12 117421322 117421338 -26861151 - MER3 DNA MER1_type -50 159 146 2133 118 10 10 chr12 117421338 117421635 -26860854 + AluSg SINE Alu 12 308 -2 2092 134 0 16 chr12 117421643 117421950 -26860539 + AluSx SINE Alu 1 302 -10 388 220 194 81 chr12 117421950 117422051 -26860438 - MER3 DNA MER1_type -69 140 3 185 290 16 0 chr12 117422062 117422124 -26860365 + MIR SINE MIR 175 237 -25 2165 101 59 3 chr12 117422227 117422514 -26859975 - AluSx SINE Alu -9 303 1 1995 141 14 10 chr12 117422803 117423100 -26859389 - AluSx SINE Alu -14 298 1 1951 152 0 22 chr12 117423686 117424001 -26858488 - AluJo SINE Alu -4 308 1 311 259 109 45 chr12 117424446 117424647 -26857842 - Charlie8 DNA MER1_type -2129 288 75 2252 185 75 17 chr12 117424834 117425365 -26857124 - MER68 LTR ERV1 0 562 1 664 271 39 47 chr12 117426297 117426552 -26855937 + MIR SINE MIR 8 260 -2 233 277 161 45 chr12 117426591 117426746 -26855743 - MIR SINE MIR -44 218 46 180 286 29 14 chr12 117427415 117427485 -26855004 + MIR SINE MIR 30 100 -162 402 94 47 16 chr12 117427707 117427771 -26854718 + AluJ/FRAM SINE Alu 225 290 -22 383 101 0 43 chr12 117427814 117427883 -26854606 - L1MB8 LINE L1 -1 6177 6112 2294 85 3 15 chr12 117427884 117428214 -26854275 + L1PA8A LINE L1 5805 6130 -1 1718 156 3 57 chr12 117428214 117428566 -26853923 - L1MB8 LINE L1 -57 6121 5789 1900 149 13 17 chr12 117428987 117429288 -26853201 + AluJb SINE Alu 1 300 -12 733 136 9 0 chr12 117429288 117429398 -26853091 - FLAM_A SINE Alu -18 115 5 939 204 66 5 chr12 117429680 117429891 -26852598 + MER58A DNA MER1_type 1 224 0 236 284 39 0 chr12 117430711 117430813 -26851676 - L2 LINE L2 -31 3241 3136 2272 132 0 0 chr12 117431001 117431311 -26851178 + AluSx SINE Alu 1 310 -2 344 320 66 52 chr12 117431613 117431845 -26850644 - L1ME4a LINE L1 -126 5995 5757 2281 100 3 3 chr12 117431845 117432136 -26850353 - AluSp SINE Alu -22 291 1 344 320 66 52 chr12 117432136 117432175 -26850314 - L1ME4a LINE L1 -364 5757 5720 2286 105 10 0 chr12 117432190 117432485 -26850004 - AluSq SINE Alu -15 298 1 1643 205 28 25 chr12 117432490 117432851 -26849638 - MER74A LTR ERVL -1 557 196 393 119 30 0 chr12 117432851 117432918 -26849571 - MER74A LTR ERVL -489 69 1 717 153 0 8 chr12 117433665 117433783 -26848706 + AluJo SINE Alu 20 136 -176 92 50 0 0 chr12 117433783 117433924 -26848565 + AT_rich Low_complexity Low_complexity 1 141 0 198 251 62 6 chr12 117434079 117434184 -26848305 + MIR SINE MIR 106 214 -48 985 116 8 0 chr12 117434789 117434918 -26847571 - AluSq/x SINE Alu -182 130 1 601 194 0 0 chr12 117435123 117435221 -26847268 - FLAM_A SINE Alu -43 99 2 473 228 26 90 chr12 117435228 117435461 -26847028 - L1MD3 LINE L1 -11 7984 7767 1848 116 84 4 chr12 117435978 117436253 -26846236 + AluJb SINE Alu 2 298 -14 322 237 115 14 chr12 117436325 117436464 -26846025 - L1ME4a LINE L1 -2 6119 5967 210 344 73 0 chr12 117436471 117436567 -26845922 - L2 LINE L2 -19 3294 3192 2389 113 0 0 chr12 117436588 117436898 -26845591 + AluSx SINE Alu 1 310 -2 201 108 0 0 chr12 117437148 117437185 -26845304 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 618 27 0 0 chr12 117437185 117437260 -26845229 - L1PA5 LINE L1 -16 6138 6064 1317 51 18 0 chr12 117437260 117437455 -26845034 + L1P LINE L1 5142 5339 -815 558 228 35 7 chr12 117437570 117437715 -26844774 + MIR SINE MIR 46 194 -68 1180 141 0 0 chr12 117437866 117438029 -26844460 - AluSx SINE Alu -149 163 1 240 100 0 0 chr12 117438058 117438098 -26844391 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 1936 89 111 0 chr12 117438190 117438460 -26844029 + AluSp SINE Alu 2 301 -12 1956 164 0 19 chr12 117439078 117439396 -26843093 + AluJb SINE Alu 1 312 0 721 160 19 32 chr12 117439818 117439974 -26842515 + MER106B DNA MER1_type 906 1059 0 1432 179 10 63 chr12 117440069 117440370 -26842119 + AluJo SINE Alu 13 297 -15 248 231 111 70 chr12 117440483 117440682 -26841807 + MER106A DNA MER1_type 1 207 -29 563 187 66 66 chr12 117441453 117441545 -26840944 + MER103 DNA DNA 1 95 -71 1924 200 77 67 chr12 117441545 117442094 -26840395 - MLT2B3 LTR ERVL 0 554 1 563 187 66 66 chr12 117442094 117442167 -26840322 + MER103 DNA DNA 94 166 0 2712 115 40 13 chr12 117442294 117442747 -26839742 - MER4C LTR ERV1 0 465 1 2169 109 0 0 chr12 117442766 117443041 -26839448 - AluSx SINE Alu -15 297 23 417 297 23 32 chr12 117443415 117443634 -26838855 - L1MC5 LINE L1 -44 7917 7701 512 128 0 20 chr12 117443898 117444000 -26838489 + (TAG)n Simple_repeat Simple_repeat 1 100 0 3566 139 60 8 chr12 117444022 117444627 -26837862 - MER50 LTR ERV1 -98 636 1 848 174 41 41 chr12 117444773 117444991 -26837498 - L1MD3 LINE L1 -7 7988 7771 586 198 0 0 chr12 117445888 117445994 -26836495 + MER5A DNA MER1_type 8 113 -76 639 257 29 18 chr12 117446044 117446215 -26836274 - MER5B DNA MER1_type -5 173 1 600 275 53 0 chr12 117446730 117446901 -26835588 + MIR SINE MIR 31 210 -52 2279 112 7 0 chr12 117448050 117448346 -26834143 - AluSx SINE Alu -14 298 1 252 213 0 0 chr12 117448367 117448428 -26834061 + (CA)n Simple_repeat Simple_repeat 2 62 0 264 271 71 50 chr12 117449884 117450024 -26832465 - L3 LINE CR1 -115 1462 1320 397 234 103 9 chr12 117450084 117450191 -26832298 + MIR SINE MIR 100 216 -46 2346 108 0 0 chr12 117450263 117450568 -26831921 + AluSx SINE Alu 1 305 -7 187 268 54 0 chr12 117450596 117450652 -26831837 - L3 LINE CR1 -278 1299 1241 420 238 108 76 chr12 117450799 117450836 -26831653 - MER3 DNA MER1_type -9 200 166 2035 163 0 0 chr12 117450836 117451142 -26831347 - AluJo SINE Alu -6 306 1 420 238 108 76 chr12 117451142 117451289 -26831200 - MER3 DNA MER1_type -43 166 10 247 250 67 39 chr12 117451920 117452024 -26830465 + MIR3 SINE MIR 15 121 -87 205 192 8 183 chr12 117452495 117452563 -26829926 - MIR SINE MIR -81 181 141 1642 142 83 53 chr12 117452563 117452865 -26829624 + AluJo SINE Alu 2 312 0 205 192 8 183 chr12 117452865 117452916 -26829573 - MIR SINE MIR -121 141 83 358 282 17 8 chr12 117453161 117453278 -26829211 + MIR SINE MIR 80 197 -65 414 217 109 63 chr12 117453495 117453670 -26828819 - MIR3 SINE MIR -25 183 1 297 258 86 47 chr12 117454177 117454305 -26828184 + L2 LINE L2 3179 3311 -2 253 326 45 61 chr12 117454541 117454673 -26827816 - L2 LINE L2 0 3313 3184 2411 109 0 0 chr12 117454860 117455171 -26827318 + AluSx SINE Alu 1 311 -1 427 280 25 57 chr12 117455385 117455542 -26826947 - MIR3 SINE MIR -22 186 35 1746 165 34 0 chr12 117455887 117456178 -26826311 - AluJb SINE Alu -1 311 11 297 0 0 0 chr12 117456222 117456255 -26826234 + (TA)n Simple_repeat Simple_repeat 2 34 0 2226 116 0 0 chr12 117456441 117456748 -26825741 - AluSx SINE Alu 0 307 1 715 214 242 3 chr12 117456830 117457115 -26825374 - L1M4 LINE L1 -2462 3684 3332 584 240 20 7 chr12 117457785 117457931 -26824558 + MER5B DNA MER1_type 30 177 -1 1865 124 91 0 chr12 117460177 117460442 -26822047 - AluSx SINE Alu -13 299 11 356 256 179 0 chr12 117461841 117461958 -26820531 - MIR SINE MIR -115 147 10 308 238 38 12 chr12 117462165 117462245 -26820244 + MLT1K LTR MaLR 167 248 -340 366 274 105 58 chr12 117462270 117462460 -26820029 + MLT1K LTR MaLR 359 557 -31 1899 179 0 0 chr12 117462981 117463277 -26819212 - AluJo SINE Alu -16 296 1 341 231 65 19 chr12 117463279 117463387 -26819102 - MIR SINE MIR -114 148 36 454 224 46 46 chr12 117464816 117464968 -26817521 + L2 LINE L2 2938 3089 -183 2179 142 0 0 chr12 117465235 117465538 -26816951 - AluSx SINE Alu -9 303 1 3192 129 113 44 chr12 117465559 117466034 -26816455 - L1MB3 LINE L1 -3 6180 5642 2274 116 3 0 chr12 117466034 117466335 -26816154 + AluSx SINE Alu 1 302 -10 3192 129 113 44 chr12 117466335 117466540 -26815949 - L1MB3 LINE L1 -541 5642 5453 207 0 0 0 chr12 117467158 117467181 -26815308 + (TC)n Simple_repeat Simple_repeat 2 24 0 2358 113 0 0 chr12 117467181 117467482 -26815007 - AluSx SINE Alu -11 301 1 1788 176 0 17 chr12 117467520 117467822 -26814667 - AluJo SINE Alu -15 297 1 230 67 0 0 chr12 117467823 117467853 -26814636 - Alu SINE Alu -19 114 85 377 198 93 0 chr12 117468596 117468682 -26813807 + MIR SINE MIR 53 146 -116 1648 139 160 79 chr12 117468682 117469007 -26813482 - MLT1D LTR MaLR 0 505 135 1870 142 20 43 chr12 117469007 117469310 -26813179 - AluJo SINE Alu -15 297 2 1648 139 160 79 chr12 117469310 117469416 -26813073 - MLT1D LTR MaLR -370 135 39 252 128 0 0 chr12 117469563 117469602 -26812887 + MIR SINE MIR 110 148 -114 395 233 84 70 chr12 117469925 117470140 -26812349 - MLT1K LTR MaLR -217 371 154 2292 79 4 0 chr12 117470372 117470652 -26811837 + AluSc SINE Alu 14 294 -15 547 244 6 67 chr12 117470688 117470852 -26811637 + MIR SINE MIR 88 241 -21 235 97 14 0 chr12 117471135 117471174 -26811315 + MIR SINE MIR 106 144 -118 2283 108 3 3 chr12 117473332 117473638 -26808851 + AluSx SINE Alu 1 306 -6 272 331 99 7 chr12 117473666 117473808 -26808681 + MIR SINE MIR 60 214 -48 582 244 22 7 chr12 117474198 117474333 -26808156 + MIR SINE MIR 30 166 -96 786 134 49 28 chr12 117474405 117474547 -26807942 - MER46A DNA MER2_type -91 145 1 327 239 87 0 chr12 117475130 117475222 -26807267 + MIR SINE MIR 45 144 -64 1722 173 14 4 chr12 117475453 117475730 -26806759 + AluJo SINE Alu 14 293 -19 247 353 34 8 chr12 117476091 117476210 -26806279 - MIR SINE MIR -113 149 28 516 268 96 102 chr12 117476495 117476747 -26805742 - L1ME4a LINE L1 -37 6084 5832 2516 80 0 0 chr12 117476747 117477047 -26805442 - AluSx SINE Alu -12 300 1 516 268 96 102 chr12 117477047 117477526 -26804963 - L1ME4a LINE L1 -289 5832 5372 198 209 0 0 chr12 117477700 117477743 -26804746 + (TG)n Simple_repeat Simple_repeat 1 43 0 216 158 0 0 chr12 117477817 117477855 -26804634 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 167 0 0 chr12 117478019 117478061 -26804428 + (TG)n Simple_repeat Simple_repeat 1 42 0 216 226 0 0 chr12 117478138 117478200 -26804289 + (TG)n Simple_repeat Simple_repeat 1 62 0 280 273 0 0 chr12 117478269 117478335 -26804154 + (TG)n Simple_repeat Simple_repeat 1 66 0 243 217 0 0 chr12 117478396 117478456 -26804033 + (TG)n Simple_repeat Simple_repeat 1 60 0 279 0 0 0 chr12 117478516 117478547 -26803942 + (TG)n Simple_repeat Simple_repeat 1 31 0 349 284 37 0 chr12 117478942 117479051 -26803438 - Charlie8 DNA MER1_type -2154 263 151 1063 170 0 0 chr12 117479134 117479293 -26803196 - AluJb SINE Alu -9 303 145 207 262 83 0 chr12 117479532 117479616 -26802873 - MIR SINE MIR -78 184 94 279 54 0 0 chr12 117480032 117480069 -26802420 + (CAGGG)n Simple_repeat Simple_repeat 3 39 0 329 291 7 34 chr12 117480324 117480470 -26802019 - MIR SINE MIR -67 141 45 213 280 0 67 chr12 117480977 117481052 -26801437 - MIR SINE MIR -86 176 107 468 283 133 0 chr12 117481623 117481789 -26800700 + MIR SINE MIR 73 260 -2 230 184 294 55 chr12 117481968 117482077 -26800412 - MER117 DNA MER1_type -32 165 31 223 390 41 8 chr12 117482169 117482292 -26800197 + L2 LINE L2 3162 3288 -25 236 272 117 29 chr12 117482373 117482476 -26800013 - MIR SINE MIR -72 190 79 894 188 109 0 chr12 117482496 117482698 -26799791 + MER58A DNA MER1_type 1 224 0 244 286 0 0 chr12 117482891 117482961 -26799528 - MIR SINE MIR -14 248 179 474 160 0 0 chr12 117482966 117483041 -26799448 - MER58B DNA MER1_type 0 341 267 605 178 0 0 chr12 117483042 117483143 -26799346 - MER58B DNA MER1_type -235 106 6 334 298 40 0 chr12 117483241 117483365 -26799124 - MIR SINE MIR -84 178 50 448 195 195 8 chr12 117483820 117483938 -26798551 - MIR SINE MIR -10 252 113 377 336 46 14 chr12 117484127 117484344 -26798145 - MIR SINE MIR -19 243 20 285 248 10 40 chr12 117484793 117484894 -26797595 + CT-rich Low_complexity Low_complexity 4 101 0 686 250 134 5 chr12 117485675 117485899 -26796590 + MIR SINE MIR 10 262 0 223 125 25 0 chr12 117486061 117486101 -26796388 - MIR SINE MIR -117 145 105 2032 108 0 0 chr12 117486773 117487033 -26795456 - AluSg SINE Alu -16 294 35 214 311 87 10 chr12 117487205 117487308 -26795181 - MIR SINE MIR -117 145 35 182 197 66 16 chr12 117487404 117487465 -26795024 + MER5A DNA MER1_type 37 100 -89 270 311 48 0 chr12 117487527 117487630 -26794859 + MIR SINE MIR 23 130 -78 310 203 78 78 chr12 117488235 117488363 -26794126 + MIR SINE MIR 30 157 -105 2390 98 0 0 chr12 117488775 117489071 -26793418 + AluSx SINE Alu 1 296 -16 348 308 18 0 chr12 117489147 117489271 -26793218 + MIR SINE MIR 32 156 -61 374 280 37 69 chr12 117490139 117490328 -26792161 - MIR SINE MIR -21 241 59 1886 132 44 58 chr12 117490403 117490606 -26791883 + MER1B DNA MER1_type 1 198 -2512 2155 125 13 3 chr12 117490606 117490909 -26791580 - AluSq SINE Alu -7 306 1 1886 132 44 58 chr12 117490909 117491047 -26791442 + MER1B DNA MER1_type 198 337 0 564 225 133 7 chr12 117491091 117491242 -26791247 - MER3 DNA MER1_type -26 183 14 207 331 182 7 chr12 117491439 117491593 -26790896 + L3 LINE CR1 1370 1550 -27 249 42 42 21 chr12 117491606 117491654 -26790835 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2055 112 18 4 chr12 117491658 117491934 -26790555 - AluSq SINE Alu -33 280 1 249 360 0 0 chr12 117492023 117492109 -26790380 + MIR3 SINE MIR 89 174 -34 368 263 26 18 chr12 117492126 117492240 -26790249 + MIR SINE MIR 77 191 -71 360 245 14 7 chr12 117492575 117492714 -26789775 + (CA)n Simple_repeat Simple_repeat 1 140 0 423 296 19 19 chr12 117493226 117493388 -26789101 + MIR SINE MIR 60 221 -41 194 132 79 0 chr12 117493498 117493536 -26788953 - MIR SINE MIR -9 253 213 447 311 34 4 chr12 117493671 117493836 -26788653 - MIR3 SINE MIR -62 146 1 1947 175 0 0 chr12 117493900 117494208 -26788281 + AluJo SINE Alu 3 310 -2 218 314 65 39 chr12 117494402 117494555 -26787934 + MIR3 SINE MIR 17 173 -35 375 293 184 11 chr12 117494624 117494947 -26787542 + L2 LINE L2 2674 3059 -213 189 250 83 0 chr12 117495177 117495249 -26787240 + L2 LINE L2 2977 3054 -218 634 251 66 16 chr12 117495739 117495922 -26786567 + MIR SINE MIR 52 243 -19 292 167 50 0 chr12 117496975 117497035 -26785454 + MIR3 SINE MIR 106 168 -40 474 286 51 17 chr12 117497077 117497193 -26785296 + MIR SINE MIR 64 190 -72 2051 122 7 3 chr12 117497193 117497618 -26784871 + AluSx SINE Alu 12 312 0 474 286 51 17 chr12 117497618 117497679 -26784810 + MIR SINE MIR 190 247 -15 309 240 32 0 chr12 117498214 117498308 -26784181 - MIR SINE MIR -62 146 83 331 369 34 0 chr12 117498388 117498564 -26783925 + MIR SINE MIR 11 192 -70 228 67 0 0 chr12 117498640 117498670 -26783819 + (TTA)n Simple_repeat Simple_repeat 3 32 0 2026 139 10 10 chr12 117498718 117499028 -26783461 + AluSx SINE Alu 2 311 -1 332 264 22 0 chr12 117499507 117499598 -26782891 - MIR SINE MIR -54 208 116 181 288 261 39 chr12 117499817 117499970 -26782519 - MIR SINE MIR -17 245 59 441 217 0 0 chr12 117499974 117500057 -26782432 - MIR SINE MIR -71 191 109 337 231 8 14 chr12 117500185 117500271 -26782218 + MIR SINE MIR 78 146 -62 404 225 0 63 chr12 117500743 117500854 -26781635 + MIR3 SINE MIR 88 191 -17 343 200 63 0 chr12 117500974 117501069 -26781420 - MIR3 SINE MIR -27 181 81 23 0 0 0 chr12 117502149 117502172 -26780317 + AT_rich Low_complexity Low_complexity 1 23 0 29 104 0 0 chr12 117502993 117503099 -26779390 + GC_rich Low_complexity Low_complexity 1 106 0 375 163 0 0 chr12 117503186 117503266 -26779223 + (CGG)n Simple_repeat Simple_repeat 1 80 0 206 122 0 61 chr12 117503333 117503382 -26779107 + (CCCCG)n Simple_repeat Simple_repeat 2 47 0 192 330 33 22 chr12 117504787 117504878 -26777611 + MER5B DNA MER1_type 87 178 0 2164 77 36 4 chr12 117505472 117505653 -26776836 - AluY SINE Alu 0 311 116 306 0 0 0 chr12 117505653 117505687 -26776802 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2164 77 36 4 chr12 117505687 117505807 -26776682 - AluY SINE Alu -195 116 1 231 114 0 0 chr12 117506032 117506076 -26776413 + (T)n Simple_repeat Simple_repeat 1 44 0 2000 136 3 23 chr12 117506230 117506539 -26775950 + AluJo SINE Alu 1 303 -9 2132 133 0 13 chr12 117507141 117507456 -26775033 - AluSq SINE Alu -2 311 1 237 139 0 0 chr12 117507456 117507499 -26774990 + (T)n Simple_repeat Simple_repeat 1 43 0 211 304 108 10 chr12 117507870 117507972 -26774517 + MIR SINE MIR 77 188 -74 2122 122 0 7 chr12 117508102 117508390 -26774099 + AluJb SINE Alu 14 299 -13 511 306 63 47 chr12 117508728 117509113 -26773376 + Charlie8 DNA MER1_type 1 381 -2036 23 0 0 0 chr12 117510588 117510611 -26771878 + AT_rich Low_complexity Low_complexity 1 23 0 311 172 118 0 chr12 117511401 117511494 -26770995 + L1MD3 LINE L1 6987 7090 -905 30 59 0 0 chr12 117511537 117511588 -26770901 + AT_rich Low_complexity Low_complexity 1 51 0 2445 216 25 70 chr12 117511592 117512316 -26770173 + L1MD3 LINE L1 7302 7992 -3 2289 153 43 50 chr12 117512338 117512874 -26769615 + L1MB2 LINE L1 5636 6167 -4 746 238 48 33 chr12 117512947 117513157 -26769332 - MER20 DNA MER1_type -6 213 1 225 0 0 0 chr12 117513193 117513218 -26769271 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 272 222 0 0 chr12 117513241 117513295 -26769194 - MER3 DNA MER1_type -3 206 153 1831 163 14 14 chr12 117513303 117513597 -26768892 + AluJo SINE Alu 1 294 -18 2209 113 0 44 chr12 117513599 117513919 -26768570 + AluSx SINE Alu 1 306 -6 490 301 101 71 chr12 117513928 117514079 -26768410 + L1ME LINE L1 4937 5082 -1064 2217 106 0 3 chr12 117514079 117514363 -26768126 + AluSc SINE Alu 1 283 -26 490 301 101 71 chr12 117514363 117514542 -26767947 + L1ME LINE L1 5082 5286 -860 2229 92 14 10 chr12 117514542 117514837 -26767652 + AluSx SINE Alu 1 296 -16 490 301 101 71 chr12 117514837 117514941 -26767548 + L1ME LINE L1 5286 5385 -761 404 344 45 42 chr12 117514974 117515332 -26767157 + L1ME LINE L1 5410 5768 -394 2363 109 0 3 chr12 117515810 117516114 -26766375 + AluSg SINE Alu 1 303 -7 2245 79 7 4 chr12 117516114 117516391 -26766098 + AluSc SINE Alu 17 294 -15 339 273 180 22 chr12 117516770 117516909 -26765580 - MER5A DNA MER1_type -3 186 26 1406 226 162 48 chr12 117517057 117517169 -26765320 - MLT1G LTR MaLR 0 590 492 668 200 23 0 chr12 117517169 117517299 -26765190 + FLAM_C SINE Alu 1 133 0 1406 226 162 48 chr12 117517299 117517744 -26764745 - MLT1G LTR MaLR -98 492 4 4560 75 2 0 chr12 117517975 117518592 -26763897 - L1PA8 LINE L1 0 6172 5555 3439 74 40 3 chr12 117518591 117519259 -26763230 + L1PA8 LINE L1 4874 5560 -612 559 198 60 84 chr12 117519682 117519750 -26762739 - MLT1G1 LTR MaLR -430 165 97 1830 160 11 0 chr12 117519750 117520090 -26762399 - AluSx SINE Alu 0 343 1 559 198 60 84 chr12 117520090 117520187 -26762302 - MLT1G1 LTR MaLR -498 97 3 2318 100 0 10 chr12 117520394 117520704 -26761785 - AluSg1 SINE Alu -2 307 1 2057 119 36 0 chr12 117520739 117521041 -26761448 + AluSq SINE Alu 1 313 0 327 273 0 0 chr12 117521146 117521223 -26761266 - MIR SINE MIR 0 262 186 581 158 0 10 chr12 117521469 117521570 -26760919 - L1MB5 LINE L1 0 6174 6075 328 221 60 121 chr12 117521570 117521632 -26760857 - MIR SINE MIR -62 200 136 832 164 0 15 chr12 117521632 117521766 -26760723 - FLAM_C SINE Alu 0 133 2 328 221 60 121 chr12 117521766 117521852 -26760637 - MIR SINE MIR -126 136 61 459 154 10 28 chr12 117522013 117522037 -26760452 + L1MA9 LINE L1 6096 6119 -176 790 118 8 8 chr12 117522037 117522164 -26760325 - L1MA9 LINE L1 0 6312 6186 459 154 10 28 chr12 117522164 117522237 -26760252 + L1MA9 LINE L1 6119 6186 -109 219 69 0 0 chr12 117522291 117522320 -26760169 + (T)n Simple_repeat Simple_repeat 1 29 0 868 232 22 5 chr12 117522485 117522670 -26759819 + MER58A DNA MER1_type 37 224 0 299 287 50 40 chr12 117523156 117523257 -26759232 - L2 LINE L2 -54 3259 3158 1033 197 30 4 chr12 117523281 117523515 -26758974 + L1MD3 LINE L1 7741 7980 -15 213 121 0 0 chr12 117523548 117523581 -26758908 + (CATA)n Simple_repeat Simple_repeat 3 35 0 646 253 12 36 chr12 117525208 117525374 -26757115 + MIR SINE MIR 80 241 -21 1740 162 3 22 chr12 117525840 117526154 -26756335 - AluJo SINE Alu -4 308 1 2240 110 0 0 chr12 117526310 117526602 -26755887 + AluSq SINE Alu 2 293 -20 372 263 0 0 chr12 117526908 117526984 -26755505 + Tigger5 DNA MER2_type 1 76 -2247 410 195 26 0 chr12 117526987 117527064 -26755425 - Tigger5 DNA MER2_type -3 2320 2242 * 425 192 51 0 chr12 117527054 117527132 -26755357 + Tigger5 DNA MER2_type 2242 2323 0 2187 119 0 10 chr12 117527186 117527591 -26754898 - AluSx SINE Alu 0 402 1 738 149 0 9 chr12 117527632 117527746 -26754743 - FLAM_C SINE Alu -29 114 2 251 200 62 15 chr12 117527749 117527814 -26754675 - MIR SINE MIR -97 165 98 2128 153 104 60 chr12 117528027 117528496 -26753993 - L1MB7 LINE L1 -1 6183 5694 1563 167 71 3 chr12 117528499 117528781 -26753708 - MSTA LTR MaLR -126 302 2 286 279 148 29 chr12 117528867 117529111 -26753378 - L1M4 LINE L1 -1511 4635 4363 786 125 0 0 chr12 117529256 117529360 -26753129 - FRAM SINE Alu -16 160 57 694 298 46 58 chr12 117529719 117530048 -26752441 - MLT1K LTR MaLR -121 467 143 288 239 60 15 chr12 117530049 117530116 -26752373 - MLT1K LTR MaLR -380 208 139 * 327 235 0 15 chr12 117530083 117530151 -26752338 - MLT1K LTR MaLR -348 240 174 2906 85 3 3 chr12 117530651 117531015 -26751474 - THE1B LTR MaLR 0 364 1 912 211 13 0 chr12 117531348 117531504 -26750985 - FRAM SINE Alu -8 158 1 2307 108 7 0 chr12 117531757 117532062 -26750427 + AluSx SINE Alu 1 307 -5 1982 137 0 17 chr12 117532354 117532654 -26749835 + AluSx SINE Alu 1 295 -17 508 281 58 66 chr12 117532829 117533378 -26749111 + L1MC/D LINE L1 5198 5430 -801 1987 88 42 25 chr12 117533445 117533728 -26748761 - AluSx SINE Alu -12 300 13 605 199 35 78 chr12 117533747 117533978 -26748511 - MER97c DNA MER1_type? -41 1049 829 2195 116 0 7 chr12 117534176 117534478 -26748011 + AluSx SINE Alu 1 300 -12 2831 206 20 11 chr12 117534707 117535260 -26747229 - MER89 LTR ERV1 -1 558 1 2171 106 0 62 chr12 117535395 117535716 -26746773 - AluSx SINE Alu -11 301 1 1997 156 0 0 chr12 117535813 117536114 -26746375 - AluJo SINE Alu -11 301 1 788 189 0 8 chr12 117536208 117536335 -26746154 + FLAM_C SINE Alu 2 127 -16 1629 272 25 9 chr12 117536386 117536823 -26745666 - MER97b DNA MER1_type? -542 511 68 1933 151 25 0 chr12 117537175 117537500 -26744989 - L1MC3 LINE L1 -196 7589 7257 5154 175 39 9 chr12 117537530 117539320 -26743169 + L1MB7 LINE L1 4253 6100 -84 1961 145 63 0 chr12 117539327 117539645 -26742844 - MER2 DNA MER2_type -7 338 1 2191 121 0 3 chr12 117539750 117540047 -26742442 + AluSx SINE Alu 1 296 -16 32 67 0 0 chr12 117540047 117540107 -26742382 + AT_rich Low_complexity Low_complexity 1 60 0 258 105 0 0 chr12 117540846 117540884 -26741605 + (T)n Simple_repeat Simple_repeat 1 38 0 705 242 112 0 chr12 117541509 117541687 -26740802 + MER3 DNA MER1_type 3 200 -9 1631 196 14 0 chr12 117542652 117542948 -26739541 + AluJb SINE Alu 1 300 -12 2521 51 0 3 chr12 117542950 117543246 -26739243 + AluY SINE Alu 1 295 -16 206 31 0 31 chr12 117543250 117543282 -26739207 + (TTATA)n Simple_repeat Simple_repeat 3 33 0 2374 129 34 20 chr12 117543541 117543898 -26738591 + THE1B LTR MaLR 1 362 -2 458 221 103 7 chr12 117544072 117544208 -26738281 - L1MC4a LINE L1 0 7808 7660 248 305 0 0 chr12 117544861 117544920 -26737569 + L2 LINE L2 3207 3265 -7 358 344 20 7 chr12 117546109 117546260 -26736229 - L1ME2 LINE L1 -10 6154 6002 2429 92 7 0 chr12 117546385 117546691 -26735798 + AluSx SINE Alu 1 308 -4 472 217 87 14 chr12 117546922 117546948 -26735541 + L1ME4a LINE L1 5973 5996 -125 1941 97 7 18 chr12 117546948 117547226 -26735263 - AluSx SINE Alu -37 275 1 472 217 87 14 chr12 117547226 117547337 -26735152 + L1ME4a LINE L1 5996 6120 -1 2120 104 0 55 chr12 117547592 117547920 -26734569 + AluY SINE Alu 1 310 -1 212 263 18 18 chr12 117548630 117548687 -26733802 - MER5A DNA MER1_type -9 180 124 1828 113 76 46 chr12 117548929 117549289 -26733200 - AluSx SINE Alu 0 369 1 194 0 39 0 chr12 117549651 117549677 -26732812 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 411 60 0 0 chr12 117550739 117550789 -26731700 - MER58 DNA MER1_type -3 2417 2368 * 863 104 104 19 chr12 117550787 117550941 -26731548 - MER58 DNA MER1_type -2162 258 92 715 191 22 15 chr12 117551134 117551270 -26731219 - MER58 DNA MER1_type -2277 143 7 216 0 0 0 chr12 117552118 117552142 -26730347 + (A)n Simple_repeat Simple_repeat 1 24 0 213 154 0 0 chr12 117553366 117553405 -26729084 + T-rich Low_complexity Low_complexity 1 39 0 236 53 26 0 chr12 117553707 117553745 -26728744 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 591 226 53 62 chr12 117554433 117554641 -26727848 - L1ME3A LINE L1 0 6170 5965 2085 126 3 22 chr12 117554795 117555112 -26727377 + AluJb SINE Alu 1 311 -1 1453 198 60 64 chr12 117555670 117556090 -26726399 - MER39 LTR ERV1 0 707 290 2269 95 7 0 chr12 117556703 117556999 -26725490 + AluSq SINE Alu 1 298 -15 1712 128 110 7 chr12 117557189 117557470 -26725019 + AluSx SINE Alu 1 310 -2 1355 158 24 8 chr12 117557610 117557857 -26724632 - AluJb SINE Alu -22 290 40 1845 161 0 23 chr12 117558260 117558565 -26723924 + AluJo SINE Alu 1 298 -14 523 281 116 0 chr12 117558818 117558982 -26723507 + MIR SINE MIR 15 197 -65 2319 136 0 23 chr12 117559079 117559424 -26723065 + MER1B DNA MER1_type 1 337 0 240 159 27 42 chr12 117560008 117560085 -26722404 + MIR SINE MIR 13 85 -123 1290 178 30 4 chr12 117560108 117560338 -26722151 + MER46A DNA MER2_type 1 236 0 304 365 77 0 chr12 117560405 117560638 -26721851 + L1 LINE L1 5146 5396 -750 2291 78 0 3 chr12 117560792 117561123 -26721366 - AluY SINE Alu 0 330 1 964 163 0 7 chr12 117561137 117561290 -26721199 - FRAM SINE Alu -24 152 1 389 296 0 40 chr12 117561473 117561598 -26720891 + L2 LINE L2 3152 3271 -1 2148 101 52 0 chr12 117561645 117561932 -26720557 + AluSx SINE Alu 1 302 -10 1908 103 136 55 chr12 117561974 117562258 -26720231 - L1PA16 LINE L1 -6 6160 5838 1854 107 0 4 chr12 117562258 117562502 -26719987 - AluSx SINE Alu -12 300 58 1908 103 136 55 chr12 117562502 117562584 -26719905 - L1PA16 LINE L1 -328 5838 5764 2627 105 28 25 chr12 117563071 117563434 -26719055 - THE1B LTR MaLR 0 364 1 232 311 37 67 chr12 117563733 117563868 -26718621 + MIR SINE MIR 119 249 -13 322 265 36 0 chr12 117564046 117564129 -26718360 - L2 LINE L2 0 3272 3187 1910 172 0 6 chr12 117564475 117564789 -26717700 - AluJb SINE Alu 0 312 1 360 251 18 11 chr12 117564795 117564922 -26717567 - L1M1 LINE L1 -459 5845 5719 * 673 287 94 41 chr12 117564910 117565645 -26716844 - L1MC/D LINE L1 -743 5403 4901 303 183 15 0 chr12 117565650 117565727 -26716762 - L1ME1 LINE L1 -4 6158 6081 639 280 109 66 chr12 117565984 117566969 -26715520 - L1MC/D LINE L1 -1438 4708 3682 1184 104 7 0 chr12 117567111 117567265 -26715224 + AluSg/x SINE Alu 135 289 -23 249 269 37 28 chr12 117567277 117567385 -26715104 - L1ME1 LINE L1 -213 5951 5843 964 220 53 13 chr12 117567521 117567748 -26714741 + MIR SINE MIR 20 255 -7 665 275 138 53 chr12 117567749 117568131 -26714358 - L1ME1 LINE L1 -378 5792 5444 2246 109 0 0 chr12 117568131 117568425 -26714064 - AluSx SINE Alu -17 295 2 1926 155 7 0 chr12 117568428 117568724 -26713765 - AluJb SINE Alu -14 298 1 665 275 138 53 chr12 117568724 117568824 -26713665 - L1ME1 LINE L1 -727 5443 5265 1793 183 0 3 chr12 117568967 117569252 -26713237 + AluJo SINE Alu 1 284 -28 423 193 23 0 chr12 117569272 117569360 -26713129 - L1ME1 LINE L1 -1053 5093 5004 * 1601 196 60 11 chr12 117569359 117569712 -26712777 - L1MB8 LINE L1 0 6178 5809 1522 258 37 48 chr12 117569702 117570257 -26712232 - L1ME1 LINE L1 -1120 5026 4478 * 1053 198 8 34 chr12 117570257 117570445 -26712044 - L1MB5 LINE L1 -8 6166 5984 2145 143 63 54 chr12 117570445 117570872 -26711617 - MSTB1 LTR MaLR -1 431 1 1053 198 8 34 chr12 117570872 117570921 -26711568 - L1MB5 LINE L1 -190 5984 5935 1522 258 37 48 chr12 117570921 117571017 -26711472 - L1ME1 LINE L1 -1668 4478 4382 523 288 46 14 chr12 117571074 117571293 -26711196 - L1MC5 LINE L1 -61 7900 7675 707 139 0 0 chr12 117571327 117571442 -26711047 - L1MB7 LINE L1 0 6184 6070 1039 128 20 98 chr12 117571446 117571575 -26710914 - L1MB7 LINE L1 -503 5675 5566 1768 171 16 25 chr12 117571575 117571890 -26710599 - AluJb SINE Alu 0 312 1 1039 128 20 98 chr12 117571890 117571963 -26710526 - L1MB7 LINE L1 -612 5566 5489 528 148 59 10 chr12 117571975 117572076 -26710413 - MSTB1 LTR MaLR -124 308 203 326 44 0 0 chr12 117572083 117572128 -26710361 - L1MB7 LINE L1 -725 5459 5415 356 218 106 24 chr12 117572136 117572306 -26710183 - L1MC5 LINE L1 -447 7514 7331 958 169 60 20 chr12 117572307 117572508 -26709981 - MER3 DNA MER1_type 0 209 1 420 284 28 7 chr12 117572532 117572673 -26709816 - L1ME1 LINE L1 -3363 2783 2640 385 271 104 32 chr12 117572760 117572981 -26709508 + L1MC5 LINE L1 5746 5982 -1826 2342 106 0 0 chr12 117573001 117573302 -26709187 - AluSc SINE Alu -8 301 1 815 112 22 22 chr12 117573333 117573467 -26709022 - AluJo SINE Alu -178 134 1 2099 125 3 0 chr12 117573936 117574223 -26708266 + AluSx SINE Alu 1 288 -24 605 255 77 19 chr12 117574258 117574532 -26707957 + L1MC5 LINE L1 6563 6863 -951 789 259 0 6 chr12 117574533 117574703 -26707786 + FRAM SINE Alu 1 164 -12 2838 219 60 70 chr12 117574715 117574794 -26707695 + L1MC5 LINE L1 6854 6932 -1029 2004 109 0 67 chr12 117574794 117575106 -26707383 + AluSx SINE Alu 1 291 -21 2838 219 60 70 chr12 117575106 117576095 -26706394 + L1MC5 LINE L1 6932 7911 -50 29 78 0 0 chr12 117576096 117576160 -26706329 + AT_rich Low_complexity Low_complexity 1 64 0 203 79 26 0 chr12 117576163 117576201 -26706288 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 233 266 21 11 chr12 117576201 117576295 -26706194 - MER113 DNA MER1_type? -423 98 4 630 260 92 57 chr12 117576676 117577023 -26705466 - MLT1J2 LTR MaLR 0 450 62 473 308 24 39 chr12 117577334 117577542 -26704947 + MER102b DNA MER1_type 137 341 0 192 77 0 0 chr12 117577612 117577638 -26704851 + (TTTAA)n Simple_repeat Simple_repeat 3 28 0 226 288 43 43 chr12 117577707 117577846 -26704643 - L3b LINE CR1 -342 1241 1103 490 259 127 5 chr12 117578302 117578507 -26703982 - MIR SINE MIR -32 230 1 1870 180 10 6 chr12 117578554 117578865 -26703624 - AluJb SINE Alu 0 312 1 359 221 27 60 chr12 117578984 117579133 -26703356 - L1MC5 LINE L1 -36 7925 7782 3772 198 77 15 chr12 117579155 117580267 -26702222 - L1ME2 LINE L1 0 6164 4980 414 0 0 0 chr12 117580267 117580313 -26702176 + (TG)n Simple_repeat Simple_repeat 2 47 0 3772 198 77 15 chr12 117580313 117580353 -26702136 - L1ME2 LINE L1 -1184 4980 4944 682 185 0 15 chr12 117580366 117580496 -26701993 - AluJo SINE Alu -178 134 7 318 294 0 10 chr12 117580507 117580609 -26701880 - L1ME2 LINE L1 -1198 4948 4848 283 226 0 0 chr12 117580637 117580699 -26701790 - L1ME2 LINE L1 -1433 4713 4652 754 218 26 16 chr12 117580699 117580892 -26701597 + LTR41 LTR ERVL 1 195 -578 230 300 14 14 chr12 117581249 117581319 -26701170 + LTR41 LTR ERVL 513 582 -191 23 54 0 0 chr12 117581438 117581475 -26701014 + AT_rich Low_complexity Low_complexity 1 37 0 551 280 93 11 chr12 117581565 117581747 -26700742 + MIR SINE MIR 45 241 -21 1106 282 120 41 chr12 117582271 117582806 -26699683 - MLT1K LTR MaLR -10 578 2 23 0 0 0 chr12 117583005 117583028 -26699461 + AT_rich Low_complexity Low_complexity 1 23 0 820 159 8 0 chr12 117583479 117583611 -26698878 - FLAM_A SINE Alu 0 133 1 2102 100 0 10 chr12 117583924 117584215 -26698274 - AluSx SINE Alu 0 312 25 6158 79 22 6 chr12 117584344 117585403 -26697086 - L1PA11 LINE L1 0 6174 5082 348 264 146 33 chr12 117585450 117585712 -26696777 + L2 LINE L2 2755 3051 -221 2210 87 25 0 chr12 117585712 117585998 -26696491 + AluSx SINE Alu 1 293 -19 348 264 146 33 chr12 117585998 117586009 -26696480 + L2 LINE L2 3051 3059 -213 2257 80 6 19 chr12 117586067 117586379 -26696110 - AluSc SINE Alu -1 308 1 1038 144 0 0 chr12 117586805 117586985 -26695504 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1781 154 3 11 chr12 117588049 117588335 -26694154 - AluJb SINE Alu -28 284 1 2305 101 0 3 chr12 117588725 117589021 -26693468 + AluSg SINE Alu 1 295 -15 2185 119 0 22 chr12 117589143 117589494 -26692995 - AluSx SINE Alu 0 312 1 2217 124 0 6 chr12 117590086 117590400 -26692089 - AluSx SINE Alu 0 312 1 252 266 9 53 chr12 117591115 117591228 -26691261 - MLT1K LTR MaLR -11 577 470 827 241 79 81 chr12 117591228 117591685 -26690804 + L1ME3A LINE L1 5417 5872 -298 2143 103 30 13 chr12 117591735 117592037 -26690452 + AluSq SINE Alu 1 307 -6 745 204 7 13 chr12 117592082 117592234 -26690255 - MER58B DNA MER1_type 0 341 191 1725 229 176 32 chr12 117592502 117592581 -26689908 - L1ME3 LINE L1 -53 6109 6043 2375 105 0 0 chr12 117592581 117592887 -26689602 + AluSx SINE Alu 1 306 -6 1725 229 176 32 chr12 117592887 117592901 -26689588 - L1ME3 LINE L1 -119 6043 6032 1857 161 0 17 chr12 117592901 117593193 -26689296 + AluJo SINE Alu 1 287 -25 1725 229 176 32 chr12 117593193 117593869 -26688620 - L1ME3 LINE L1 -130 6032 5223 795 278 42 71 chr12 117593868 117594321 -26688168 + L1ME3 LINE L1 4757 5196 -950 * 781 192 23 23 chr12 117594759 117594936 -26687553 - MER5B DNA MER1_type -1 177 1 1958 157 0 0 chr12 117595010 117595304 -26687185 - AluJb SINE Alu -11 301 8 829 122 9 0 chr12 117595762 117595877 -26686612 + FLAM_C SINE Alu 5 120 -13 459 19 0 0 chr12 117596468 117596520 -26685969 - L1PA3 LINE L1 -18 6137 6086 855 130 42 68 chr12 117597433 117597467 -26685022 + MER53 DNA DNA 3 36 -153 2206 116 0 13 chr12 117597467 117597778 -26684711 + AluSx SINE Alu 1 307 -5 855 130 42 68 chr12 117597778 117597935 -26684554 + MER53 DNA DNA 36 189 0 1922 153 0 14 chr12 117598200 117598494 -26683995 + AluJo SINE Alu 1 290 -22 219 69 0 0 chr12 117598494 117598523 -26683966 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 30 chr12 117598573 117598587 -26683902 + AT_rich Low_complexity Low_complexity 1 14 -18 2313 85 3 7 chr12 117598587 117598881 -26683608 - AluSc SINE Alu -16 293 1 22 0 0 30 chr12 117598881 117598899 -26683590 + AT_rich Low_complexity Low_complexity 14 32 0 1568 133 0 145 chr12 117599590 117599928 -26682561 + AluJb SINE Alu 1 289 -13 412 242 0 0 chr12 117599928 117600019 -26682470 + AluJ/FRAM SINE Alu 219 309 -3 580 299 76 33 chr12 117600209 117600677 -26681812 + L2 LINE L2 2763 3252 -20 271 165 24 27 chr12 117600758 117600970 -26681519 + AluJo SINE Alu 1 283 -19 200 284 90 15 chr12 117601273 117601340 -26681149 + L2 LINE L2 3151 3222 -50 1694 187 10 10 chr12 117601439 117601738 -26680751 - AluJo SINE Alu -5 307 9 2174 120 3 7 chr12 117602063 117602362 -26680127 - AluSx SINE Alu -14 298 1 471 176 0 0 chr12 117602453 117602544 -26679945 + CT-rich Low_complexity Low_complexity 2 92 0 2125 143 0 0 chr12 117603413 117603713 -26678776 - AluJo SINE Alu -12 300 1 2301 117 0 0 chr12 117604131 117604439 -26678050 + AluSx SINE Alu 1 308 -4 1185 202 9 0 chr12 117604455 117604673 -26677816 - AluJb SINE Alu -92 220 1 1988 152 0 0 chr12 117605438 117605727 -26676762 - AluJb SINE Alu -21 291 3 475 248 72 0 chr12 117605824 117605949 -26676540 - L1ME3 LINE L1 -6 6156 6023 1171 136 0 0 chr12 117606026 117606225 -26676264 - AluSg/x SINE Alu 0 312 133 285 98 0 0 chr12 117606225 117606266 -26676223 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2018 118 14 4 chr12 117606266 117606546 -26675943 - AluSx SINE Alu -29 283 1 723 253 148 44 chr12 117606782 117606899 -26675590 + L1ME3A LINE L1 5760 5863 -307 2360 105 0 0 chr12 117606899 117607195 -26675294 + AluSx SINE Alu 1 296 -16 723 253 148 44 chr12 117607195 117607441 -26675048 + L1ME3A LINE L1 5863 6161 -9 2241 125 0 3 chr12 117607465 117607778 -26674711 + AluSx SINE Alu 1 312 0 2003 151 0 13 chr12 117607978 117608283 -26674206 - AluJo SINE Alu -11 301 1 2265 110 0 3 chr12 117608466 117608767 -26673722 + AluSg SINE Alu 1 300 -10 2393 169 38 92 chr12 117609052 117609175 -26673314 - L1MB7 LINE L1 0 6184 6056 452 18 18 0 chr12 117609175 117609232 -26673257 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 1742 111 77 4 chr12 117609232 117609493 -26672996 - AluSg SINE Alu -30 280 1 2393 169 38 92 chr12 117609493 117609978 -26672511 - L1MB7 LINE L1 -126 6058 5608 2203 86 3 60 chr12 117609978 117610293 -26672196 + AluSq SINE Alu 1 297 -16 1150 131 0 0 chr12 117610293 117610453 -26672036 + AluSg/x SINE Alu 134 293 -19 1301 175 18 88 chr12 117610456 117610630 -26671859 - L1MB7 LINE L1 -743 5403 5218 2123 86 0 0 chr12 117610630 117610898 -26671591 - AluY SINE Alu -43 268 1 1301 175 18 88 chr12 117610898 117611077 -26671412 - L1MB7 LINE L1 -928 5218 5327 2439 39 0 4 chr12 117611077 117611387 -26671102 - AluY SINE Alu 0 309 1 1301 175 18 88 chr12 117611387 117611599 -26670890 - L1MB7 LINE L1 -818 5328 5103 1420 128 5 5 chr12 117611609 117611813 -26670676 - AluSq SINE Alu -1 312 109 225 0 0 0 chr12 117611813 117611838 -26670651 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2175 69 22 4 chr12 117611840 117612114 -26670375 - AluY SINE Alu -31 280 2 273 29 0 0 chr12 117612459 117612493 -26669996 + (CA)n Simple_repeat Simple_repeat 2 35 0 1458 154 59 15 chr12 117612507 117612780 -26669709 - L1M3f LINE L1 -5028 300 16 21 0 0 0 chr12 117612807 117612828 -26669661 + AT_rich Low_complexity Low_complexity 1 21 0 1707 159 7 46 chr12 117612830 117613132 -26669357 - AluJo SINE Alu -22 290 1 981 157 27 76 chr12 117613542 117613602 -26668887 + MER20 DNA MER1_type 4 65 -154 2113 132 145 5 chr12 117613602 117613974 -26668515 - MSTA LTR MaLR -2 426 3 981 157 27 76 chr12 117613974 117614136 -26668353 + MER20 DNA MER1_type 65 215 -4 519 281 128 61 chr12 117614466 117614825 -26667664 - L2 LINE L2 -5 3308 2926 243 259 19 56 chr12 117614943 117615051 -26667438 - MIR SINE MIR -74 134 31 1766 146 25 0 chr12 117615110 117615385 -26667104 - AluJo SINE Alu -25 287 6 1912 150 0 38 chr12 117616064 117616377 -26666112 + AluJb SINE Alu 2 302 -10 1553 161 21 112 chr12 117616378 117616427 -26666062 - L1MB2 LINE L1 0 6171 6119 2188 121 0 10 chr12 117616427 117616733 -26665756 - AluSx SINE Alu -9 303 1 1553 161 21 112 chr12 117616733 117617112 -26665377 - L1MB2 LINE L1 -52 6119 5782 23 0 0 0 chr12 117617135 117617158 -26665331 + AT_rich Low_complexity Low_complexity 1 23 0 343 250 9 37 chr12 117617325 117617433 -26665056 - L1MC4a LINE L1 -1853 5955 5851 1885 153 24 7 chr12 117617433 117617727 -26664762 - AluJo SINE Alu -13 299 1 264 33 0 0 chr12 117618243 117618273 -26664216 + AluY SINE Alu 16 45 -258 844 136 0 0 chr12 117618274 117618399 -26664090 + FLAM_C SINE Alu 16 140 -3 974 164 6 19 chr12 117618454 117618613 -26663876 + FRAM SINE Alu 1 152 -24 539 239 12 84 chr12 117618685 117618936 -26663553 - L2 LINE L2 -1 3312 3080 210 128 0 0 chr12 117619174 117619213 -26663276 + (TC)n Simple_repeat Simple_repeat 2 40 0 1013 142 0 0 chr12 117619486 117619627 -26662862 + AluJb SINE Alu 14 154 -158 * 1186 158 0 0 chr12 117619626 117619803 -26662686 + AluJo SINE Alu 112 288 -24 833 183 21 108 chr12 117620048 117620289 -26662200 - MER102b DNA MER1_type -14 327 108 2433 92 0 7 chr12 117620303 117620609 -26661880 + AluSq SINE Alu 1 304 -9 1924 144 3 46 chr12 117621034 117621181 -26661308 + AluJb SINE Alu 1 153 -159 252 0 0 0 chr12 117621181 117621209 -26661280 + (TA)n Simple_repeat Simple_repeat 2 29 0 1924 144 3 46 chr12 117621209 117621387 -26661102 + AluJb SINE Alu 153 312 0 267 221 15 0 chr12 117621844 117621912 -26660577 - MER116 DNA Mariner -8 72 4 592 257 196 52 chr12 117622168 117622198 -26660291 - L2 LINE L2 0 3313 3289 2080 146 7 0 chr12 117622198 117622492 -26659997 + AluSx SINE Alu 1 296 -16 592 257 196 52 chr12 117622492 117622621 -26659868 - L2 LINE L2 -24 3289 3180 1353 186 93 31 chr12 117622621 117622944 -26659545 - MER2 DNA MER2_type -1 343 1 592 257 196 52 chr12 117622944 117623073 -26659416 - L2 LINE L2 -133 3180 3071 1995 157 80 0 chr12 117623073 117623411 -26659078 - MLT1A1 LTR MaLR 0 365 1 592 257 196 52 chr12 117623411 117623524 -26658965 - L2 LINE L2 -242 3071 2852 2043 125 14 0 chr12 117623920 117624201 -26658288 + AluSx SINE Alu 3 287 -25 768 62 0 0 chr12 117624245 117624342 -26658147 + AluY SINE Alu 201 297 -14 2366 74 0 3 chr12 117624369 117624679 -26657810 + AluY SINE Alu 1 309 0 338 318 0 0 chr12 117624744 117624832 -26657657 - MIR SINE MIR -48 214 127 1452 149 124 32 chr12 117625102 117625264 -26657225 - AluJb SINE Alu -4 308 162 2547 68 0 10 chr12 117625264 117625575 -26656914 - AluY SINE Alu -3 308 1 1452 149 124 32 chr12 117625575 117625694 -26656795 - AluJb SINE Alu -150 162 1 593 149 50 144 chr12 117625734 117625915 -26656574 - L1ME LINE L1 -388 5776 5613 2293 107 17 0 chr12 117627281 117627580 -26654909 - AluSx SINE Alu -7 305 2 1215 127 6 0 chr12 117627619 117627792 -26654697 + AluSq SINE Alu 137 310 -3 745 188 152 65 chr12 117627864 117628256 -26654233 - MLT1C LTR MaLR -2 388 6 603 294 22 43 chr12 117628886 117629117 -26653372 - MIR SINE MIR -18 244 19 248 315 77 35 chr12 117629338 117629481 -26653008 + MIR SINE MIR 54 202 -60 1905 162 17 0 chr12 117630078 117630197 -26652292 + AluJb SINE Alu 1 117 -195 198 0 0 0 chr12 117630197 117630219 -26652270 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 1905 162 17 0 chr12 117630219 117630395 -26652094 + AluJb SINE Alu 117 301 -11 22 0 0 0 chr12 117630585 117630607 -26651882 + AT_rich Low_complexity Low_complexity 1 22 0 315 237 34 59 chr12 117630625 117630743 -26651746 - L1ME3A LINE L1 -266 5904 5790 633 247 31 0 chr12 117630761 117630923 -26651566 - MER58A DNA MER1_type -34 190 24 257 206 72 52 chr12 117630931 117631028 -26651461 - L1ME3A LINE L1 -371 5791 5693 2200 136 0 0 chr12 117631077 117631379 -26651110 + AluSx SINE Alu 1 302 -10 448 244 52 147 chr12 117632111 117632334 -26650155 - MER102b DNA MER1_type -1087 341 161 2348 114 0 13 chr12 117632334 117632650 -26649839 - AluSx SINE Alu 0 312 1 448 244 52 147 chr12 117632650 117632774 -26649715 - MER102b DNA MER1_type -1267 161 27 2266 117 0 3 chr12 117633309 117633607 -26648882 - AluSx SINE Alu -15 297 1 375 274 132 0 chr12 117633721 117633827 -26648662 + MER5A DNA MER1_type 69 188 -1 922 222 30 5 chr12 117634414 117634617 -26647872 - MER58A DNA MER1_type -16 208 1 2110 104 3 3 chr12 117635040 117635329 -26647160 + AluSx SINE Alu 5 293 -19 318 326 139 0 chr12 117635854 117636026 -26646463 + MIR SINE MIR 40 235 -27 207 0 0 0 chr12 117636067 117636090 -26646399 + (T)n Simple_repeat Simple_repeat 1 23 0 352 243 0 0 chr12 117636267 117636337 -26646152 + L1MC4 LINE L1 6634 6703 -1339 538 211 28 0 chr12 117636342 117636484 -26646005 + (TATATG)n Simple_repeat Simple_repeat 5 150 0 320 337 0 0 chr12 117636486 117636575 -26645914 + L1MC4 LINE L1 6615 6703 -1339 303 224 45 0 chr12 117636559 117636626 -26645863 + L1MCa LINE L1 1995 2064 -4362 * 381 43 0 0 chr12 117636627 117636674 -26645815 + (CA)n Simple_repeat Simple_repeat 2 48 0 1148 139 12 0 chr12 117637030 117637196 -26645293 + FRAM SINE Alu 2 169 -7 2132 131 0 3 chr12 117637856 117638154 -26644335 + AluSx SINE Alu 1 297 -15 275 242 32 0 chr12 117639237 117639299 -26643190 - MER5B DNA MER1_type -61 117 54 2318 95 3 3 chr12 117639753 117640047 -26642442 + AluSx SINE Alu 1 294 -18 3127 179 157 11 chr12 117640816 117641554 -26640935 + MER6 DNA MER2_type 1 846 -19 2041 131 3 7 chr12 117642716 117643006 -26639483 + AluSg SINE Alu 1 289 -21 195 363 57 8 chr12 117646198 117646322 -26636167 - MIR3 SINE MIR -31 177 48 1693 198 27 7 chr12 117646328 117646626 -26635863 - AluJo SINE Alu -8 304 1 870 135 8 8 chr12 117646638 117646764 -26635725 - FLAM_C SINE Alu -17 126 1 1124 256 39 76 chr12 117647220 117647705 -26634784 + L1MDb LINE L1 795 1261 -5148 1955 156 3 3 chr12 117647718 117648019 -26634470 + AluJo SINE Alu 1 301 -11 287 317 65 8 chr12 117648025 117648148 -26634341 + MIR3 SINE MIR 48 177 -31 558 287 63 21 chr12 117649631 117649868 -26632621 - MIR SINE MIR -8 254 8 3184 137 31 77 chr12 117650069 117650743 -26631746 + L1MB7 LINE L1 5521 6163 -21 290 261 11 0 chr12 117651665 117651757 -26630732 + HAL1 LINE L1 51 143 -2364 1336 254 97 32 chr12 117651923 117652615 -26629874 + HAL1 LINE L1 501 1237 -1270 1267 278 81 23 chr12 117652622 117653190 -26629299 + HAL1 LINE L1 1894 2494 -13 241 262 83 24 chr12 117653781 117653865 -26628624 - MIR SINE MIR -68 194 106 837 254 30 45 chr12 117655834 117656169 -26626320 - MER102b DNA MER1_type -11 330 1 250 197 45 45 chr12 117656258 117656324 -26626165 - MIR3 SINE MIR -52 156 91 310 333 146 18 chr12 117656964 117657135 -26625354 + MIR SINE MIR 52 244 -18 227 290 40 40 chr12 117657448 117657548 -26624941 + MER5A DNA MER1_type 16 115 -74 979 192 62 10 chr12 117657548 117657756 -26624733 - MER20 DNA MER1_type 0 219 1 330 261 143 10 chr12 117657803 117658103 -26624386 + L1ME3A LINE L1 5170 5506 -660 270 317 109 4 chr12 117658395 117658625 -26623864 + L1ME3A LINE L1 5687 5940 -230 555 210 217 0 chr12 117658694 117658837 -26623652 + MER5B DNA MER1_type 3 176 -2 419 296 98 30 chr12 117659581 117659784 -26622705 - MIR SINE MIR -12 250 34 180 236 55 73 chr12 117659809 117659864 -26622625 - MIR SINE MIR -189 73 20 294 292 104 42 chr12 117660460 117660604 -26621885 + MIR SINE MIR 47 199 -63 1985 146 0 7 chr12 117660609 117660910 -26621579 + AluJo SINE Alu 1 299 -13 2641 59 0 0 chr12 117661916 117662223 -26620266 - AluY SINE Alu -4 307 1 322 277 59 8 chr12 117662355 117662474 -26620015 - MIR SINE MIR -91 171 47 228 330 19 48 chr12 117662582 117662685 -26619804 - MIR SINE MIR -73 135 35 * 361 191 15 0 chr12 117662676 117662744 -26619745 + L2 LINE L2 2990 3058 -255 560 298 96 14 chr12 117663052 117663334 -26619155 + MER102b DNA MER1_type 18 322 -19 1943 197 92 14 chr12 117663863 117664371 -26618118 + MER90 LTR ERV1 67 614 0 4757 130 78 23 chr12 117665179 117666107 -26616382 - Tigger3b DNA MER2_type -252 979 1 556 209 81 27 chr12 117666131 117666279 -26616210 - L1ME2 LINE L1 -1 6163 6008 205 292 146 11 chr12 117666571 117666660 -26615829 + MIR SINE MIR 14 114 -148 2246 111 3 0 chr12 117667054 117667352 -26615137 - AluSp SINE Alu -14 299 1 1080 98 0 0 chr12 117667354 117667486 -26615003 - AluSp SINE Alu -181 132 1 606 217 54 6 chr12 117667704 117667870 -26614619 - MER5B DNA MER1_type 0 178 5 224 322 124 8 chr12 117668207 117668328 -26614161 + MIR3 SINE MIR 40 174 -34 421 160 46 186 chr12 117668403 117668463 -26614026 + MER5B DNA MER1_type 1 68 -110 1731 158 10 26 chr12 117668463 117668767 -26613722 + AluJo SINE Alu 1 299 -13 421 160 46 186 chr12 117668767 117668900 -26613589 + MER5B DNA MER1_type 68 167 -11 653 184 76 32 chr12 117669350 117669508 -26612981 - MER5A DNA MER1_type -24 165 1 204 279 0 25 chr12 117670325 117670404 -26612085 + C-rich Low_complexity Low_complexity 1 77 0 461 255 198 16 chr12 117671308 117671500 -26610989 + MIR SINE MIR 22 248 -14 2243 72 3 0 chr12 117671770 117672063 -26610426 + AluSq SINE Alu 1 294 -19 587 230 27 9 chr12 117672653 117672820 -26609669 - MIR SINE MIR -61 147 16 197 293 145 66 chr12 117673494 117673637 -26608852 - MIR SINE MIR 0 262 91 1845 167 0 10 chr12 117673637 117673936 -26608553 + AluJo SINE Alu 1 296 -16 197 293 145 66 chr12 117673936 117674034 -26608455 - MIR SINE MIR -171 91 2 385 271 99 13 chr12 117674040 117674191 -26608298 - L1ME4a LINE L1 -26 6095 5932 993 34 0 0 chr12 117674274 117674393 -26608096 + AluY SINE Alu 180 298 -13 234 143 0 0 chr12 117674403 117674438 -26608051 + Alu SINE Alu 1 35 -267 978 156 19 0 chr12 117674445 117674605 -26607884 + AluSg/x SINE Alu 138 300 -10 317 101 89 89 chr12 117675095 117675174 -26607315 - MADE1 DNA Mariner -1 79 1 21 0 0 0 chr12 117675441 117675462 -26607027 + AT_rich Low_complexity Low_complexity 1 21 0 1631 158 34 3 chr12 117675462 117675759 -26606730 - L1PB4 LINE L1 -4 6152 5847 199 200 22 0 chr12 117676261 117676306 -26606183 + L2 LINE L2 3268 3313 0 233 283 131 0 chr12 117677261 117677360 -26605129 - MIR SINE MIR -1 261 150 2020 114 0 3 chr12 117677672 117677961 -26604528 - AluSc SINE Alu -21 288 1 22 0 0 0 chr12 117677965 117677987 -26604502 + AT_rich Low_complexity Low_complexity 1 22 0 1787 138 7 4 chr12 117678043 117678318 -26604171 - AluJb SINE Alu -26 286 11 252 329 20 46 chr12 117678549 117678701 -26603788 - L2 LINE L2 -38 3234 3087 350 256 35 0 chr12 117678706 117678792 -26603697 - MIR SINE MIR -117 145 57 320 212 242 15 chr12 117678926 117679058 -26603431 - Charlie8 DNA MER1_type -2164 253 92 207 0 0 0 chr12 117679852 117679875 -26602614 + (A)n Simple_repeat Simple_repeat 1 23 0 329 264 64 48 chr12 117680419 117680544 -26601945 - MLT1K LTR MaLR -319 269 143 303 340 27 37 chr12 117681012 117681200 -26601289 + MIR3 SINE MIR 19 204 -4 1076 204 51 42 chr12 117681270 117681524 -26600965 - MIR SINE MIR 0 262 8 264 256 91 170 chr12 117682366 117682772 -26599717 - L2 LINE L2 0 3272 2899 203 152 0 0 chr12 117683791 117683824 -26598665 - MIR SINE MIR -71 191 159 494 202 167 0 chr12 117684091 117684205 -26598284 - FLAM_A SINE Alu 0 133 1 267 325 37 31 chr12 117685022 117685185 -26597304 - MER103 DNA DNA 0 166 3 866 188 65 6 chr12 117685271 117685441 -26597048 - MER58A DNA MER1_type 0 224 45 1117 186 25 0 chr12 117685467 117685671 -26596818 - MER3 DNA MER1_type 0 209 1 1004 157 63 47 chr12 117685707 117685731 -26596758 - MER33 DNA MER1_type -2319 266 244 1758 157 16 13 chr12 117685731 117686037 -26596452 + AluJb SINE Alu 1 307 -5 1004 157 63 47 chr12 117686037 117686267 -26596222 - MER33 DNA MER1_type -2341 244 8 712 278 71 0 chr12 117687028 117687097 -26595392 - MIR SINE MIR -31 231 168 1675 146 26 33 chr12 117687097 117687399 -26595090 - AluJo SINE Alu -12 300 1 712 278 71 0 chr12 117687399 117687527 -26594962 - MIR SINE MIR -94 168 20 4915 165 41 15 chr12 117688641 117688752 -26593737 - L1MB7 LINE L1 0 6184 6077 3776 92 2 10 chr12 117688752 117689265 -26593224 - MER9 LTR ERVK 0 511 3 4915 165 41 15 chr12 117689265 117690353 -26592136 - L1MB7 LINE L1 -107 6077 4960 392 223 114 5 chr12 117690379 117690581 -26591908 - L1ME4a LINE L1 -1 6120 5897 317 282 17 8 chr12 117690673 117690790 -26591699 - L1ME3A LINE L1 -64 6106 5989 379 233 68 34 chr12 117690797 117690943 -26591546 - L1ME3A LINE L1 -215 5906 5756 1572 151 50 7 chr12 117692092 117692370 -26590119 - AluJb SINE Alu -7 305 16 281 244 198 51 chr12 117692536 117692733 -26589756 - MIR SINE MIR -1 261 36 28 48 0 0 chr12 117693176 117693218 -26589271 + AT_rich Low_complexity Low_complexity 1 42 0 366 239 82 52 chr12 117693968 117694102 -26588387 + MIR SINE MIR 90 227 -35 1383 201 6 43 chr12 117694911 117695235 -26587254 - AluJo SINE Alu 0 312 1 25 31 0 0 chr12 117696834 117696866 -26585623 + AT_rich Low_complexity Low_complexity 1 32 0 344 213 38 0 chr12 117696888 117696968 -26585521 - L1ME4a LINE L1 -259 5862 5780 528 291 99 11 chr12 117697195 117697377 -26585112 - L2 LINE L2 0 3313 3116 413 302 43 43 chr12 117697380 117697407 -26585082 - L2 LINE L2 -710 2604 2578 1075 191 27 32 chr12 117697407 117697627 -26584862 - MER20 DNA MER1_type 0 219 1 413 302 43 43 chr12 117697627 117697834 -26584655 - L2 LINE L2 -735 2579 2370 199 275 58 58 chr12 117697897 117698035 -26584454 - L2 LINE L2 -1076 2238 2101 1781 52 0 21 chr12 117698078 117698311 -26584178 - AluY SINE Alu -14 297 70 667 244 0 67 chr12 117699519 117699608 -26582881 + MER58A DNA MER1_type 1 76 -265 2205 89 3 10 chr12 117699608 117699922 -26582567 - AluSq SINE Alu -1 312 1 667 244 0 67 chr12 117699922 117699996 -26582493 + MER58A DNA MER1_type 76 153 -71 1019 181 145 104 chr12 117699996 117700361 -26582128 + MER57A LTR ERV1 1 380 -23 342 213 0 13 chr12 117700367 117700442 -26582047 + MER58A DNA MER1_type 151 224 0 849 270 99 0 chr12 117700443 117700665 -26581824 + MIR SINE MIR 18 261 -1 703 270 71 27 chr12 117701329 117701724 -26580765 + MIR SINE MIR 5 262 0 211 208 0 62 chr12 117702095 117702143 -26580346 - L2 LINE L2 0 3272 3228 700 203 25 13 chr12 117702355 117702513 -26579976 - L1MC5 LINE L1 -53 7908 7749 193 56 28 28 chr12 117702514 117702550 -26579939 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 1210 83 0 0 chr12 117702550 117702706 -26579783 - L1PA8 LINE L1 -24 6148 5993 311 177 0 0 chr12 117702710 117702772 -26579717 - L1MC5 LINE L1 -203 7758 7697 832 258 62 0 chr12 117704208 117704417 -26578072 - MER58A DNA MER1_type 0 224 3 198 332 117 29 chr12 117704838 117705145 -26577344 - L2 LINE L2 -341 2973 2640 395 344 206 10 chr12 117706060 117706458 -26576031 - L3 LINE CR1 -10 1567 1092 624 230 170 0 chr12 117706575 117706710 -26575779 + MER119 DNA MER1_type 56 213 -370 727 209 90 15 chr12 117706711 117706912 -26575577 + MER119 DNA MER1_type 368 583 0 205 267 200 57 chr12 117707533 117707638 -26574851 + MIR SINE MIR 45 164 -98 2506 55 0 0 chr12 117708177 117708484 -26574005 - AluY SINE Alu -4 307 1 2206 104 3 0 chr12 117708631 117708940 -26573549 - AluSp SINE Alu -3 310 1 2328 92 0 16 chr12 117709431 117709748 -26572741 - AluSx SINE Alu 0 312 1 216 296 259 0 chr12 117710682 117710763 -26571726 - MER91B DNA MER1_type -2 188 87 282 315 39 39 chr12 117710777 117710907 -26571582 - MER91B DNA MER1_type -60 130 1 339 193 216 0 chr12 117711363 117711451 -26571038 - Charlie8 DNA MER1_type -1914 503 397 279 267 108 25 chr12 117711533 117711653 -26570836 - Charlie8 DNA MER1_type -2160 257 128 348 302 73 39 chr12 117712363 117712542 -26569947 - MIR3 SINE MIR -6 202 18 407 329 148 35 chr12 117713214 117713667 -26568822 + L3 LINE CR1 327 830 -747 235 331 117 6 chr12 117713788 117713951 -26568538 + L2 LINE L2 2637 2817 -497 228 67 0 0 chr12 117714015 117714045 -26568444 + (T)n Simple_repeat Simple_repeat 1 30 0 413 321 45 18 chr12 117714976 117715170 -26567319 - MIR SINE MIR -45 217 21 233 274 53 44 chr12 117715340 117715453 -26567036 + MIR SINE MIR 79 192 -70 242 171 0 0 chr12 117716088 117716129 -26566360 + MIR SINE MIR 110 150 -112 183 269 0 77 chr12 117718694 117718746 -26563743 + MIR3 SINE MIR 140 187 -21 305 221 0 0 chr12 117719271 117719347 -26563142 - L1MC/D LINE L1 -361 5809 5757 2357 71 0 0 chr12 117719862 117720157 -26562332 + AluSg SINE Alu 1 295 -15 203 170 0 38 chr12 117721541 117721594 -26560895 + CT-rich Low_complexity Low_complexity 3 53 0 2099 112 16 0 chr12 117721843 117722148 -26560341 + AluSq SINE Alu 1 310 -3 2175 108 3 10 chr12 117722148 117722462 -26560027 + AluSx SINE Alu 1 312 0 794 203 0 0 chr12 117730288 117730421 -26552068 - FLAM_C SINE Alu 0 133 1 2222 77 17 0 chr12 117730974 117731272 -26551217 - AluY SINE Alu -8 303 1 306 290 155 26 chr12 117731655 117731848 -26550641 + MIR SINE MIR 21 238 -24 2135 116 0 13 chr12 117732225 117732536 -26549953 + AluSx SINE Alu 1 307 -5 366 335 25 13 chr12 117732698 117732856 -26549633 + MIR SINE MIR 21 180 -82 1656 170 0 29 chr12 117733464 117733770 -26548719 - AluJb SINE Alu -3 309 13 454 336 124 13 chr12 117734563 117734789 -26547700 + MIR SINE MIR 2 252 -10 1417 221 86 34 chr12 117734885 117735329 -26547160 - MLT1C LTR MaLR 0 467 1 314 305 12 0 chr12 117735445 117735527 -26546962 - MER117 DNA MER1_type 0 197 115 353 309 119 14 chr12 117735632 117735747 -26546742 - MIR SINE MIR 0 262 160 2081 201 89 2 chr12 117735747 117736174 -26546315 + MLT1C LTR MaLR 4 467 0 353 309 119 14 chr12 117736174 117736268 -26546221 - MIR SINE MIR -102 160 31 406 279 61 18 chr12 117736273 117736438 -26546051 - Charlie8 DNA MER1_type -2198 219 48 386 275 29 43 chr12 117736683 117736821 -26545668 + L3 LINE CR1 973 1108 -469 1968 104 28 3 chr12 117736828 117737116 -26545373 + AluSx SINE Alu 1 295 -17 243 326 63 0 chr12 117738215 117738310 -26544179 - MIR SINE MIR -116 146 46 299 296 72 16 chr12 117738571 117738696 -26543793 - L2 LINE L2 -4 3268 3137 390 273 20 23 chr12 117738758 117738909 -26543580 - MIR SINE MIR -72 136 10 220 300 0 0 chr12 117738898 117738968 -26543521 - L2 LINE L2 -279 2993 2924 * 279 152 30 45 chr12 117739911 117739977 -26542512 - L2 LINE L2 -1 3312 3248 1822 154 10 3 chr12 117739988 117740281 -26542208 - AluJb SINE Alu -17 295 1 302 329 193 0 chr12 117740489 117740650 -26541839 + MIR SINE MIR 13 204 -58 259 283 0 0 chr12 117740714 117740767 -26541722 + (CACG)n Simple_repeat Simple_repeat 4 56 0 1628 169 13 7 chr12 117740836 117741138 -26541351 + MER90 LTR ERV1 307 610 -4 459 283 110 39 chr12 117742484 117742848 -26539641 - L1ME4a LINE L1 -26 6095 5706 207 0 0 0 chr12 117742861 117742884 -26539605 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 207 125 0 0 chr12 117742923 117742963 -26539526 + (A)n Simple_repeat Simple_repeat 1 40 0 403 326 34 0 chr12 117742987 117743134 -26539355 - L1ME4a LINE L1 -460 5661 5510 1537 167 14 20 chr12 117743918 117744211 -26538278 - AluJo SINE Alu -21 291 1 376 354 56 6 chr12 117744369 117744530 -26537959 + MIR SINE MIR 22 190 -72 490 231 75 46 chr12 117744662 117744835 -26537654 + MIR SINE MIR 81 258 -4 * 712 275 25 25 chr12 117744832 117745068 -26537421 + MIR SINE MIR 25 260 -2 2152 105 0 16 chr12 117745095 117745399 -26537090 + AluSx SINE Alu 2 300 -12 2311 87 0 3 chr12 117745399 117745698 -26536791 + AluSx SINE Alu 1 298 -14 296 273 102 11 chr12 117745701 117745789 -26536700 + MIR3 SINE MIR 105 200 -8 209 322 110 0 chr12 117746051 117746169 -26536320 - MIR SINE MIR -89 173 43 450 291 60 39 chr12 117746172 117746406 -26536083 - MIR SINE MIR 0 262 24 288 322 11 0 chr12 117747463 117747550 -26534939 + MIR SINE MIR 154 241 -21 516 258 46 0 chr12 117747665 117747816 -26534673 + MER96B DNA MER1_type? 19 176 -241 24 0 0 0 chr12 117748419 117748443 -26534046 + AT_rich Low_complexity Low_complexity 1 24 0 1817 113 0 39 chr12 117748547 117748830 -26533659 - AluSx SINE Alu -5 307 36 194 313 30 0 chr12 117749161 117749228 -26533261 + L2 LINE L2 3203 3271 -1 405 0 0 0 chr12 117749920 117749965 -26532524 + (CA)n Simple_repeat Simple_repeat 1 45 0 279 248 163 35 chr12 117750752 117750893 -26531596 - MER5A DNA MER1_type -2 187 29 675 172 53 53 chr12 117750894 117751063 -26531426 - MER20 DNA MER1_type -14 205 37 479 371 38 4 chr12 117752019 117752256 -26530233 + L2 LINE L2 3026 3270 -2 317 331 30 8 chr12 117753251 117753384 -26529105 - L1MC/D LINE L1 -2000 5808 5673 373 345 39 20 chr12 117753476 117753679 -26528810 + MIR SINE MIR 4 210 -52 213 253 63 25 chr12 117754023 117754102 -26528387 + L2 LINE L2 3155 3236 -77 362 99 0 66 chr12 117754206 117754297 -26528192 + (TCTCCC)n Simple_repeat Simple_repeat 3 87 0 2513 118 83 8 chr12 117755244 117755642 -26526847 + MSTA LTR MaLR 1 428 0 236 311 81 34 chr12 117756313 117756461 -26526028 + MIR SINE MIR 10 164 -98 343 278 99 13 chr12 117756490 117756665 -26525824 + MIR SINE MIR 11 208 -54 240 295 74 68 chr12 117756732 117756922 -26525567 - L2 LINE L2 -74 3198 3008 851 209 136 0 chr12 117757370 117757561 -26524928 - MER20 DNA MER1_type -2 217 1 1634 180 0 38 chr12 117757651 117757967 -26524522 - AluJb SINE Alu -8 304 1 1519 191 40 0 chr12 117757967 117758239 -26524250 - AluJb SINE Alu -29 283 1 323 235 12 0 chr12 117758239 117758320 -26524169 - MIR SINE MIR -114 148 67 238 289 0 12 chr12 117759022 117759105 -26523384 - L2 LINE L2 -199 3073 2992 431 287 85 31 chr12 117759191 117759633 -26522856 - LTR33 LTR ERVL 0 521 1 848 95 0 0 chr12 117760347 117760463 -26522026 + AluSp/q SINE Alu 189 304 -9 622 290 41 14 chr12 117760466 117760687 -26521802 - MIR SINE MIR -1 261 35 229 292 15 0 chr12 117760820 117760885 -26521604 + MLT1I LTR MaLR 72 137 -272 1840 146 3 24 chr12 117760910 117761204 -26521285 - AluJb SINE Alu -19 293 6 944 158 0 0 chr12 117761244 117761383 -26521106 - U4 snRNA snRNA -2 143 5 812 289 20 20 chr12 117761392 117761638 -26520851 + MLT1I LTR MaLR 164 409 0 1877 137 18 3 chr12 117762228 117762513 -26519976 - AluSx SINE Alu -18 294 6 800 230 25 10 chr12 117762524 117762724 -26519765 - L1ME3A LINE L1 -5 6165 5963 2063 194 60 29 chr12 117762892 117763252 -26519237 + MER90 LTR ERV1 1 381 -233 1871 137 24 3 chr12 117763252 117763544 -26518945 + AluSx SINE Alu 1 298 -14 2063 194 60 29 chr12 117763544 117763667 -26518822 + MER90 LTR ERV1 381 499 -115 463 163 0 33 chr12 117763667 117763759 -26518730 - L1MB3 LINE L1 0 6183 6095 1706 169 0 23 chr12 117763861 117764163 -26518326 + AluJo SINE Alu 6 300 -12 317 339 58 58 chr12 117764229 117764509 -26517980 - L1ME4a LINE L1 -11 6110 5828 2079 122 0 26 chr12 117764509 117764821 -26517668 - AluSx SINE Alu -6 306 3 317 339 58 58 chr12 117764821 117764853 -26517636 - L1ME4a LINE L1 -292 5829 5798 190 244 0 0 chr12 117765210 117765255 -26517234 + L2 LINE L2 3263 3307 -6 345 319 63 46 chr12 117765256 117765494 -26516995 - MIR SINE MIR -14 248 7 1659 171 3 26 chr12 117765500 117765823 -26516666 - AluJb SINE Alu 0 312 1 850 117 7 36 chr12 117765828 117765965 -26516524 - FRAM SINE Alu -18 158 26 207 143 41 0 chr12 117767096 117767145 -26515344 + (CGG)n Simple_repeat Simple_repeat 1 51 0 21 36 0 0 chr12 117767151 117767179 -26515310 + GC_rich Low_complexity Low_complexity 1 28 0 301 272 56 32 chr12 117767295 117767420 -26515069 + MIR SINE MIR 86 213 -49 550 286 27 16 chr12 117767423 117767608 -26514881 + L1MC/D LINE L1 5567 5753 -2055 576 302 33 19 chr12 117767693 117767905 -26514584 - MIR SINE MIR 0 262 48 201 250 25 62 chr12 117767961 117768041 -26514448 + MIR3 SINE MIR 114 190 -18 480 222 52 33 chr12 117768360 117768513 -26513976 - L2 LINE L2 -1089 2225 2070 405 251 81 37 chr12 117768512 117768694 -26513795 - MIR SINE MIR -59 203 19 * 1321 132 151 23 chr12 117768694 117768959 -26513530 - AluJb SINE Alu -13 299 1 405 251 81 37 chr12 117768959 117768974 -26513515 - MIR SINE MIR -243 19 6 23 0 0 0 chr12 117769562 117769585 -26512904 + AT_rich Low_complexity Low_complexity 1 23 0 254 290 54 11 chr12 117769590 117769683 -26512806 + L1MC/D LINE L1 5814 5910 -1898 2314 94 0 0 chr12 117769860 117770159 -26512330 + AluSx SINE Alu 1 299 -13 757 163 0 50 chr12 117770746 117770887 -26511602 - AluJo SINE Alu -177 135 2 218 156 78 47 chr12 117771263 117771327 -26511162 + MIR SINE MIR 59 124 -84 821 173 8 0 chr12 117771536 117771663 -26510826 - FLAM_A SINE Alu -1 132 5 193 231 26 0 chr12 117771672 117771711 -26510778 - L2 LINE L2 -11 3302 3263 * 649 271 72 25 chr12 117771677 117771913 -26510576 - MIR SINE MIR -10 252 6 180 97 0 0 chr12 117772365 117772396 -26510093 + (TG)n Simple_repeat Simple_repeat 2 32 0 1944 159 0 0 chr12 117772409 117772711 -26509778 - AluJb SINE Alu -10 302 1 654 255 110 10 chr12 117772715 117772915 -26509574 - MIR SINE MIR -6 256 37 1827 154 14 0 chr12 117773388 117773674 -26508815 - AluJb SINE Alu -22 290 1 293 293 72 50 chr12 117774168 117774390 -26508099 - L2 LINE L2 -160 3112 2886 613 256 37 11 chr12 117774873 117775064 -26507425 - MIR SINE MIR -59 203 8 216 0 0 0 chr12 117775550 117775574 -26506915 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 724 95 11 0 chr12 117775583 117775718 -26506771 - AluSg/x SINE Alu 0 325 190 255 31 0 0 chr12 117775875 117775907 -26506582 + (CACCC)n Simple_repeat Simple_repeat 4 35 0 181 352 77 33 chr12 117776041 117776223 -26506266 + L2 LINE L2 2823 3012 -260 189 0 0 0 chr12 117776285 117776306 -26506183 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 5908 22 0 0 chr12 117776369 117777035 -26505454 - L1PA3 LINE L1 0 6155 5490 468 229 110 8 chr12 117777117 117777235 -26505254 + L2 LINE L2 3184 3313 0 490 296 51 59 chr12 117777258 117777511 -26504978 + MIR SINE MIR 12 262 0 462 274 51 56 chr12 117777460 117777675 -26504814 - MIR SINE MIR -17 245 32 * 378 301 108 17 chr12 117777691 117777874 -26504615 - MIR SINE MIR -20 242 37 2240 98 0 0 chr12 117777874 117778169 -26504320 + AluSq SINE Alu 1 295 -18 378 301 108 17 chr12 117778169 117778209 -26504280 - MIR SINE MIR -225 37 2 370 244 0 0 chr12 117778690 117778776 -26503713 - MIR SINE MIR -116 146 61 1925 91 94 4 chr12 117778776 117779052 -26503437 + AluSg SINE Alu 1 301 -9 311 306 32 57 chr12 117779548 117779672 -26502817 + MER5A DNA MER1_type 69 189 0 844 169 120 0 chr12 117781086 117781269 -26501220 - MER20 DNA MER1_type 0 219 15 219 333 49 0 chr12 117781602 117781683 -26500806 - L2 LINE L2 -1 3271 3187 273 286 89 27 chr12 117781813 117781925 -26500564 + MIR3 SINE MIR 37 155 -53 797 296 143 18 chr12 117781978 117782427 -26500062 - L2 LINE L2 0 3313 2809 256 383 77 5 chr12 117783540 117783736 -26498753 + L2 LINE L2 2849 3058 -214 196 319 22 44 chr12 117783734 117783825 -26498664 + L2 LINE L2 3184 3272 0 * 182 286 0 0 chr12 117785022 117785064 -26497425 - L2 LINE L2 -7 3306 3265 180 327 40 40 chr12 117785121 117785222 -26497267 + MIR SINE MIR 7 107 -155 1493 167 117 0 chr12 117785238 117785502 -26496987 + AluJb SINE Alu 4 298 -14 570 229 81 32 chr12 117785845 117786041 -26496448 - MIR SINE MIR -50 212 2 245 196 0 0 chr12 117786017 117786063 -26496426 - L2 LINE L2 -1 3312 3267 * 462 235 44 8 chr12 117786761 117786909 -26495580 + MIR SINE MIR 17 168 -62 2079 113 20 10 chr12 117786988 117787289 -26495200 - AluSx SINE Alu -8 304 1 418 280 49 7 chr12 117787289 117787432 -26495057 - MIR SINE MIR -97 165 17 598 251 25 0 chr12 117787714 117787877 -26494612 - MLT1K LTR MaLR -2 586 420 355 301 84 0 chr12 117787976 117788119 -26494370 - MLT1K LTR MaLR -330 258 104 473 249 101 3 chr12 117788533 117788704 -26493785 + MIR SINE MIR 42 227 -35 257 258 48 6 chr12 117789027 117789130 -26493359 + CT-rich Low_complexity Low_complexity 1 174 0 658 321 78 0 chr12 117789270 117789488 -26493001 - MIR SINE MIR -11 251 17 539 320 140 0 chr12 117791372 117791594 -26490895 - MIR SINE MIR 0 262 10 240 299 78 0 chr12 117791670 117791747 -26490742 - MER5B DNA MER1_type -81 97 15 439 231 109 58 chr12 117792131 117792287 -26490202 - MER5B DNA MER1_type 0 178 15 1100 108 0 30 chr12 117792292 117792458 -26490031 + FRAM SINE Alu 7 167 -9 784 287 15 5 chr12 117792530 117792732 -26489757 + MIR SINE MIR 58 261 -1 2127 105 7 3 chr12 117793143 117793437 -26489052 - AluSx SINE Alu -17 295 1 205 229 16 16 chr12 117793736 117793797 -26488692 - MIR SINE MIR -182 80 20 341 271 282 0 chr12 117793816 117793944 -26488545 - L1ME4a LINE L1 -2 6119 6028 243 0 0 0 chr12 117793944 117793971 -26488518 + (TG)n Simple_repeat Simple_repeat 2 28 0 341 271 282 0 chr12 117793971 117794030 -26488459 - L1ME4a LINE L1 -93 6028 5879 234 0 0 0 chr12 117794188 117794214 -26488275 + (CA)n Simple_repeat Simple_repeat 2 27 0 712 283 74 4 chr12 117794344 117794574 -26487915 - MIR SINE MIR -14 248 3 462 286 16 16 chr12 117794924 117795050 -26487439 - MIR3 SINE MIR -8 200 75 278 281 58 50 chr12 117795087 117795226 -26487263 + MIR3 SINE MIR 3 142 -66 192 343 29 0 chr12 117795227 117795297 -26487192 - MIR SINE MIR -36 226 155 346 284 158 16 chr12 117795299 117795489 -26487000 - MER46C DNA MER2_type 0 338 122 2096 135 0 0 chr12 117795515 117795819 -26486670 - AluJb SINE Alu -8 304 1 259 257 178 20 chr12 117795892 117795993 -26486496 - MIR SINE MIR -109 153 37 1930 134 16 10 chr12 117796585 117796891 -26485598 - AluJo SINE Alu 0 312 5 280 271 52 21 chr12 117797102 117797198 -26485291 - L2 LINE L2 -4 3268 3170 405 257 91 17 chr12 117797198 117797423 -26485066 - MIR3 SINE MIR -23 239 1 280 260 0 13 chr12 117797528 117797605 -26484884 + MIR SINE MIR 75 150 -58 423 296 7 42 chr12 117797667 117797809 -26484680 + MIR SINE MIR 28 164 -98 1864 132 7 7 chr12 117797822 117798131 -26484358 + AluJb SINE Alu 1 309 0 353 271 178 0 chr12 117798169 117798287 -26484202 - MIR SINE MIR -97 165 27 348 131 238 12 chr12 117798738 117798822 -26483667 - MIR SINE MIR -120 142 40 237 225 28 42 chr12 117799112 117799183 -26483306 + MIR SINE MIR 74 143 -65 307 296 33 46 chr12 117799359 117799511 -26482978 - Charlie8 DNA MER1_type -2209 208 59 657 250 85 0 chr12 117800385 117800578 -26481911 + MIR SINE MIR 15 225 -37 269 376 28 14 chr12 117800595 117800736 -26481753 - L2 LINE L2 -5 3267 3125 293 276 52 131 chr12 117800818 117801199 -26481290 + L2 LINE L2 2922 3272 0 337 310 228 5 chr12 117801645 117801842 -26480647 - MIR SINE MIR 0 262 22 * 410 280 68 40 chr12 117801841 117802058 -26480431 - MIR SINE MIR -12 250 6 349 305 73 34 chr12 117802425 117802602 -26479887 - MIR SINE MIR -64 198 15 222 330 131 70 chr12 117802722 117803080 -26479409 - L2 LINE L2 -38 3234 2855 1686 145 3 50 chr12 117803373 117803676 -26478813 - AluJo SINE Alu -23 289 1 1345 198 117 36 chr12 117803770 117804190 -26478299 - MLT1C LTR MaLR -13 454 1 906 148 0 0 chr12 117804200 117804335 -26478154 + AluJ SINE Alu 1 135 -177 1681 173 0 29 chr12 117804335 117804642 -26477847 + AluJb SINE Alu 1 298 -14 209 277 18 18 chr12 117805399 117805475 -26477014 + MIR SINE MIR 88 150 -58 390 324 98 12 chr12 117805509 117805682 -26476807 - MIR SINE MIR -65 197 10 1905 150 10 0 chr12 117805711 117806005 -26476484 - AluJb SINE Alu -12 300 4 198 270 67 22 chr12 117806316 117806405 -26476084 - MIR SINE MIR -69 139 47 * 355 278 90 23 chr12 117806384 117806517 -26475972 + MIR SINE MIR 11 152 -110 746 168 77 14 chr12 117806587 117806730 -26475759 + AluJ SINE Alu 140 291 -21 282 360 81 0 chr12 117806821 117806957 -26475532 - MIR3 SINE MIR -32 176 30 289 185 247 0 chr12 117807995 117808076 -26474413 + MIR SINE MIR 63 163 -99 2078 118 3 10 chr12 117808186 117808203 -26474286 - AluSx SINE Alu -16 296 280 393 22 0 0 chr12 117808203 117808249 -26474240 + (TG)n Simple_repeat Simple_repeat 1 46 0 2078 118 3 10 chr12 117808249 117808528 -26473961 - AluSx SINE Alu -32 280 2 1852 142 6 32 chr12 117808531 117808847 -26473642 - AluJo SINE Alu -4 308 1 342 301 63 17 chr12 117808855 117809016 -26473473 - MIR SINE MIR -81 181 10 290 285 54 31 chr12 117809363 117809497 -26472992 + MIR3 SINE MIR 42 180 -28 186 335 89 18 chr12 117809820 117809972 -26472517 + MIR SINE MIR 89 253 -9 626 293 108 25 chr12 117810008 117810442 -26472047 - LTR33 LTR ERVL -5 516 47 185 311 16 0 chr12 117810877 117810938 -26471551 - L2 LINE L2 -3 3310 3249 285 316 120 0 chr12 117810969 117811086 -26471403 - L2 LINE L2 -6 3266 3136 195 129 0 0 chr12 117811651 117811682 -26470807 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 1060 126 0 6 chr12 117811951 117812110 -26470379 - FRAM SINE Alu -10 166 9 518 205 57 0 chr12 117812614 117812736 -26469753 - MIR3 SINE MIR -2 206 78 537 217 0 0 chr12 117813411 117813517 -26468972 + Charlie1a DNA MER1_type 1 106 -1349 424 233 0 11 chr12 117813513 117813603 -26468886 - 5S rRNA rRNA -32 89 1 * 4592 176 57 18 chr12 117813601 117813812 -26468677 + Charlie1a DNA MER1_type 87 288 -2473 2210 113 3 0 chr12 117813812 117814112 -26468377 + AluSx SINE Alu 3 303 -9 4592 176 57 18 chr12 117814112 117814970 -26467519 + Charlie1a DNA MER1_type 288 1198 -257 183 293 0 0 chr12 117814976 117815038 -26467451 - MIR SINE MIR -63 145 87 * 198 130 93 37 chr12 117815021 117815075 -26467414 + MIR SINE MIR 79 135 -127 521 261 92 22 chr12 117815743 117815927 -26466562 - MIR SINE MIR -37 225 29 1046 196 0 0 chr12 117816219 117816436 -26466053 - AluJb SINE Alu 0 350 134 1837 145 17 10 chr12 117816436 117816732 -26465757 - AluSx SINE Alu -14 298 1 2117 130 3 3 chr12 117816743 117817051 -26465438 - AluSx SINE Alu -4 308 1 550 276 68 43 chr12 117817153 117817479 -26465010 - MER115 DNA AcHobo -237 456 123 525 175 0 0 chr12 117817962 117818065 -26464424 + (TG)n Simple_repeat Simple_repeat 1 103 0 301 304 98 9 chr12 117819407 117819519 -26462970 - MIR SINE MIR -92 170 49 239 200 66 10 chr12 117819561 117819633 -26462856 - MIR SINE MIR -28 180 101 316 299 24 33 chr12 117820122 117820316 -26462173 + MIR SINE MIR 69 262 0 200 139 0 23 chr12 117820318 117820361 -26462128 + (TGGA)n Simple_repeat Simple_repeat 2 43 0 216 213 0 133 chr12 117820480 117820530 -26461959 + L2 LINE L2 3205 3243 -29 2194 107 30 0 chr12 117820530 117820828 -26461661 - AluSx SINE Alu -5 307 1 216 213 0 133 chr12 117820828 117820852 -26461637 + L2 LINE L2 3243 3269 -3 404 266 12 58 chr12 117820979 117821171 -26461318 + MIR3 SINE MIR 12 198 -64 308 330 186 0 chr12 117821968 117822146 -26460343 - L1M4 LINE L1 -1288 3193 1011 1293 188 15 26 chr12 117822153 117822601 -26459888 - AluJo SINE Alu 0 312 40 338 389 83 25 chr12 117822605 117822965 -26459524 + L2 LINE L2 2886 3266 -6 2171 188 60 17 chr12 117823207 117823365 -26459124 - L1MB8 LINE L1 -9 6169 6019 315 0 0 0 chr12 117823365 117823400 -26459089 + (CA)n Simple_repeat Simple_repeat 1 35 0 2171 188 60 17 chr12 117823400 117823773 -26458716 - L1MB8 LINE L1 -159 6019 5615 1018 105 49 12 chr12 117823780 117823942 -26458547 - FAM SINE Alu -2 47 1 268 325 60 26 chr12 117824118 117824235 -26458254 + MIR SINE MIR 71 191 -71 367 281 110 24 chr12 117825201 117825365 -26457124 + MIR SINE MIR 77 254 -8 188 348 76 8 chr12 117826211 117826329 -26456160 + L2 LINE L2 3132 3257 -15 279 79 0 0 chr12 117826347 117826385 -26456104 + (GGGA)n Simple_repeat Simple_repeat 2 39 0 2320 99 20 0 chr12 117826491 117826795 -26455694 + AluSx SINE Alu 1 310 -2 246 105 0 0 chr12 117826822 117826860 -26455629 + (TG)n Simple_repeat Simple_repeat 1 38 0 1762 216 57 7 chr12 117826861 117827301 -26455188 + MLT1C LTR MaLR 6 467 0 1170 128 0 16 chr12 117827463 117827825 -26454664 + (CCA)n Simple_repeat Simple_repeat 1 356 0 1233 134 0 0 chr12 117827862 117828413 -26454076 + (CCA)n Simple_repeat Simple_repeat 1 551 0 225 152 0 43 chr12 117828225 117828449 -26454040 + (CACCAT)n Simple_repeat Simple_repeat 4 47 0 1251 142 2 3 chr12 117828453 117829284 -26453205 + (CCA)n Simple_repeat Simple_repeat 1 1010 0 653 201 0 24 chr12 117829297 117829543 -26452946 + (CACCAT)n Simple_repeat Simple_repeat 1 239 0 208 361 49 0 chr12 117829869 117830013 -26452476 - L2 LINE L2 -607 2707 2557 2003 211 29 9 chr12 117830085 117830531 -26451958 - MLT1C LTR MaLR -7 460 6 202 176 0 0 chr12 117830615 117830649 -26451840 - L2 LINE L2 -88 3225 3192 314 255 159 57 chr12 117831357 117831514 -26450975 - MIR SINE MIR -55 207 35 1257 175 0 18 chr12 117831560 117831789 -26450700 + AluJo SINE Alu 87 311 -1 190 209 0 47 chr12 117832066 117832109 -26450380 - MIR SINE MIR -1 261 221 * 493 274 132 24 chr12 117832080 117832292 -26450197 - L2 LINE L2 -19 3253 3019 223 224 102 20 chr12 117832297 117832395 -26450094 + L2 LINE L2 3161 3266 -6 2074 139 30 11 chr12 117832399 117832767 -26449722 + THE1C LTR MaLR 1 375 0 377 260 31 39 chr12 117832910 117833037 -26449452 + MIR SINE MIR 20 145 -117 2021 141 0 46 chr12 117833064 117833391 -26449098 - AluJo SINE Alu 0 312 1 235 276 41 20 chr12 117833399 117833497 -26448992 - L1MC5 LINE L1 -30 7931 7832 546 229 239 10 chr12 117833513 117833714 -26448775 - HsTC2 DNA Tc2 -1651 247 1 311 0 26 0 chr12 117833803 117833842 -26448647 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2093 143 3 0 chr12 117833915 117834216 -26448273 + AluSx SINE Alu 1 302 -10 182 224 121 0 chr12 117834241 117834299 -26448190 - L2 LINE L2 -240 3073 3009 3685 95 9 11 chr12 117834549 117835098 -26447391 - L1PB3 LINE L1 -2 6152 5605 1891 126 0 4 chr12 117835098 117835359 -26447130 - AluSx SINE Alu -9 303 44 393 49 88 0 chr12 117835359 117835461 -26447028 + (TA)n Simple_repeat Simple_repeat 1 111 0 1789 167 7 10 chr12 117835461 117835755 -26446734 - AluJo SINE Alu -19 293 1 1162 283 113 19 chr12 117835849 117836524 -26445965 + L2 LINE L2 2153 2890 -424 826 138 0 31 chr12 117836557 117836687 -26445802 + FLAM_C SINE Alu 1 126 -7 1463 168 26 10 chr12 117836699 117837009 -26445480 - L1MB7 LINE L1 -19 6165 5851 1505 195 17 20 chr12 117837009 117837306 -26445183 + AluJo SINE Alu 3 298 -14 211 297 62 0 chr12 117837390 117837454 -26445035 + L2 LINE L2 3233 3300 -13 198 0 0 0 chr12 117837455 117837477 -26445012 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 290 256 11 124 chr12 117838049 117838226 -26444263 - MIR SINE MIR -62 146 5 234 378 12 12 chr12 117838237 117838409 -26444080 + MER5A DNA MER1_type 18 189 0 316 293 27 37 chr12 117838254 117838405 -26444084 - MER5B DNA MER1_type -23 163 19 310 374 16 16 chr12 117838881 117839063 -26443426 + MIR SINE MIR 77 258 -4 497 320 85 3 chr12 117839205 117839590 -26442899 - LTR16C LTR ERVL -17 474 43 2004 183 20 3 chr12 117839611 117839998 -26442491 + MLT1B LTR MaLR 1 396 0 584 297 136 42 chr12 117840009 117840437 -26442052 + L2 LINE L2 2827 3294 -19 203 143 122 0 chr12 117840544 117840593 -26441896 + L2 LINE L2 3258 3312 -1 461 328 38 16 chr12 117841041 117841224 -26441265 + MIR SINE MIR 2 188 -74 2176 129 3 7 chr12 117842468 117842771 -26439718 + AluSx SINE Alu 1 302 -10 1785 174 0 3 chr12 117842776 117843074 -26439415 + AluJb SINE Alu 3 299 -13 671 229 100 0 chr12 117843104 117843274 -26439215 + MIR SINE MIR 76 262 0 312 263 42 11 chr12 117843480 117843575 -26438914 + MIR SINE MIR 110 207 -55 1777 201 0 0 chr12 117843587 117843896 -26438593 + AluJo SINE Alu 1 309 -3 264 170 348 0 chr12 117844429 117844541 -26437948 - MIR3 SINE MIR -20 188 38 1997 113 3 38 chr12 117844562 117844898 -26437591 + AluSx SINE Alu 1 326 0 496 232 40 0 chr12 117844996 117845121 -26437368 + MIR SINE MIR 20 149 -113 720 234 0 43 chr12 117845660 117845848 -26436641 + MIR SINE MIR 81 260 -2 400 234 50 41 chr12 117846625 117846769 -26435720 + MIR SINE MIR 16 160 -72 2874 177 85 3 chr12 117846769 117847344 -26435145 - LTR26E LTR ERV1 0 622 1 400 234 50 41 chr12 117847344 117847356 -26435133 + MIR SINE MIR 160 170 -62 237 236 9 57 chr12 117847540 117847646 -26434843 - MIR SINE MIR -73 135 35 202 307 161 16 chr12 117847972 117848156 -26434333 - MIR SINE MIR -9 253 34 2312 103 0 3 chr12 117848359 117848660 -26433829 - AluSx SINE Alu -12 300 1 233 235 188 45 chr12 117849066 117849199 -26433290 + MIR SINE MIR 20 167 -65 182 283 0 0 chr12 117849213 117849259 -26433230 + L2 LINE L2 3216 3261 -11 288 308 112 14 chr12 117849272 117849415 -26433074 + MER5A DNA MER1_type 1 157 -32 * 313 213 131 57 chr12 117849309 117849431 -26433058 - MER5A DNA MER1_type -27 162 32 1522 107 171 8 chr12 117849602 117849854 -26432635 + AluSg SINE Alu 1 293 -7 724 316 97 15 chr12 117850414 117850961 -26431528 - L2 LINE L2 -59 3254 2664 425 311 34 11 chr12 117851177 117851354 -26431135 - MIR SINE MIR -71 191 11 339 121 0 0 chr12 117851870 117851928 -26430561 + (TG)n Simple_repeat Simple_repeat 1 58 0 252 274 71 35 chr12 117852439 117852552 -26429937 - MIR SINE MIR -63 145 41 453 287 8 8 chr12 117852553 117852675 -26429814 - MLT1G LTR MaLR -61 529 408 1943 169 13 0 chr12 117852687 117852994 -26429495 + AluJb SINE Alu 2 312 0 518 245 59 64 chr12 117853043 117853247 -26429242 - MLT1G LTR MaLR -195 395 193 2064 138 3 3 chr12 117853356 117853652 -26428837 + AluSq SINE Alu 1 296 -17 1885 116 4 14 chr12 117853864 117854140 -26428349 + AluSx SINE Alu 38 310 -2 498 282 0 4 chr12 117854559 117854833 -26427656 + (CTA)n Simple_repeat Simple_repeat 1 272 0 237 331 0 0 chr12 117854835 117854980 -26427509 + (CCA)n Simple_repeat Simple_repeat 1 145 0 733 281 6 0 chr12 117855034 117855212 -26427277 + (CTA)n Simple_repeat Simple_repeat 2 180 0 261 331 0 0 chr12 117855215 117855390 -26427099 + (CCA)n Simple_repeat Simple_repeat 1 175 0 478 275 2 7 chr12 117855393 117855826 -26426663 + (CTA)n Simple_repeat Simple_repeat 1 430 0 237 243 0 0 chr12 117855861 117855931 -26426558 + (CTA)n Simple_repeat Simple_repeat 2 71 0 481 234 7 7 chr12 117855951 117856105 -26426384 + (CTA)n Simple_repeat Simple_repeat 2 155 0 954 89 0 182 chr12 117856218 117856454 -26426035 - 7SK RNA RNA 0 193 1 488 249 71 114 chr12 117856616 117857037 -26425452 + L2 LINE L2 2870 3272 0 215 286 0 0 chr12 117857046 117857095 -26425394 - L2 LINE L2 -217 3055 3007 551 293 99 19 chr12 117857725 117858049 -26424440 + L1MC4a LINE L1 5716 6065 -1743 1375 178 0 0 chr12 117858123 117858348 -26424141 - AluJo SINE Alu -1 311 87 308 253 25 25 chr12 117858406 117858485 -26424004 + HAL1b LINE L1 1268 1346 -2 2198 87 58 0 chr12 117858495 117858770 -26423719 - AluSx SINE Alu -21 291 1 1682 188 33 0 chr12 117858925 117859045 -26423444 + AluJo SINE Alu 1 116 -196 207 0 0 0 chr12 117859045 117859068 -26423421 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1682 188 33 0 chr12 117859068 117859223 -26423266 + AluJo SINE Alu 116 285 -27 345 47 0 0 chr12 117859223 117859266 -26423223 + (GA)n Simple_repeat Simple_repeat 2 44 0 609 264 119 60 chr12 117859566 117859802 -26422687 + MLT1K LTR MaLR 17 238 -350 2419 93 0 7 chr12 117859802 117860112 -26422377 - AluSg SINE Alu -2 308 1 609 264 119 60 chr12 117860112 117860392 -26422097 + MLT1K LTR MaLR 238 588 0 638 53 114 18 chr12 117860559 117860673 -26421816 - L1MA5A LINE L1 -4 6293 6169 427 264 188 41 chr12 117860770 117860967 -26421522 + MIR SINE MIR 4 229 -33 277 374 45 11 chr12 117861211 117861390 -26421099 + L3 LINE CR1 1337 1521 -56 220 35 0 0 chr12 117861407 117861436 -26421053 - L2 LINE L2 0 3272 3244 1305 176 106 22 chr12 117861440 117861713 -26420776 - AluJo SINE Alu -16 296 1 1059 90 0 0 chr12 117861815 117861948 -26420541 + AluJb SINE Alu 1 133 -179 1735 201 10 0 chr12 117861998 117862306 -26420183 + AluJb SINE Alu 1 311 -1 2163 112 7 0 chr12 117862575 117862870 -26419619 + AluSq SINE Alu 1 297 -16 235 294 15 75 chr12 117863252 117863422 -26419067 - MIR SINE MIR -13 249 91 325 249 75 9 chr12 117863482 117863646 -26418843 - MIR SINE MIR -63 145 19 305 310 0 26 chr12 117864087 117864203 -26418286 + C-rich Low_complexity Low_complexity 1 113 0 219 250 33 0 chr12 117864547 117864607 -26417882 - L2 LINE L2 -21 3251 3190 1012 191 51 4 chr12 117864688 117865054 -26417435 + MLT1F LTR MaLR 117 542 0 822 173 0 0 chr12 117865185 117865312 -26417177 + FLAM_C SINE Alu 1 127 -16 240 240 20 10 chr12 117865326 117865426 -26417063 + (TA)n Simple_repeat Simple_repeat 2 102 0 610 271 18 6 chr12 117865476 117865646 -26416843 - MIR SINE MIR -64 198 27 369 281 59 7 chr12 117865668 117865809 -26416680 - MIR3 SINE MIR -71 137 6 253 388 0 12 chr12 117866361 117866526 -26415963 + (CA)n Simple_repeat Simple_repeat 1 163 0 857 281 57 0 chr12 117866579 117866807 -26415682 + MIR SINE MIR 12 252 -10 322 261 94 29 chr12 117867060 117867198 -26415291 + MIR SINE MIR 20 166 -96 347 328 39 28 chr12 117867489 117867669 -26414820 + MIR SINE MIR 80 261 -1 206 381 12 0 chr12 117867670 117867754 -26414735 + MIR3 SINE MIR 123 207 -1 210 250 86 43 chr12 117867913 117868029 -26414460 - MIR SINE MIR -71 137 17 2123 109 0 58 chr12 117868038 117868350 -26414139 - AluSx SINE Alu -18 294 1 358 284 103 24 chr12 117868587 117868721 -26413768 - MIR SINE MIR -63 145 1 473 289 47 57 chr12 117869355 117869458 -26413031 + MIR SINE MIR 41 143 -119 1831 155 23 13 chr12 117869458 117869767 -26412722 + AluJo SINE Alu 1 312 0 473 289 47 57 chr12 117869767 117869874 -26412615 + MIR SINE MIR 143 249 -13 487 331 33 6 chr12 117870140 117870321 -26412168 - MIR SINE MIR -7 255 70 206 195 24 0 chr12 117870446 117870487 -26412002 - MIR3 SINE MIR -53 155 114 220 284 291 15 chr12 117871109 117871243 -26411246 - MIR SINE MIR -3 259 89 281 337 0 0 chr12 117871751 117871840 -26410649 - MIR3 SINE MIR -46 162 74 249 262 95 0 chr12 117871888 117871972 -26410517 + MER91C DNA MER1_type 2 93 -47 505 289 156 5 chr12 117872453 117872671 -26409818 - MIR SINE MIR -6 256 6 352 330 23 23 chr12 117872845 117873058 -26409431 - MIR3 SINE MIR -42 220 8 1799 158 44 14 chr12 117873475 117873772 -26408717 + AluSx SINE Alu 1 306 -6 513 223 79 7 chr12 117873963 117874102 -26408387 - MIR SINE MIR -51 211 63 1544 148 65 55 chr12 117874178 117874503 -26407986 - AluJo SINE Alu 0 312 1 26 0 0 0 chr12 117874510 117874536 -26407953 + AT_rich Low_complexity Low_complexity 1 26 0 2296 159 37 29 chr12 117874556 117875046 -26407443 - L1MC3 LINE L1 -15 7770 7277 1915 118 30 4 chr12 117875046 117875308 -26407181 + AluSg SINE Alu 1 269 -41 180 0 0 0 chr12 117875393 117875413 -26407076 + (A)n Simple_repeat Simple_repeat 1 20 0 459 158 0 0 chr12 117875417 117875499 -26406990 - L1MC3 LINE L1 -499 7286 7205 596 172 0 10 chr12 117875499 117875598 -26406891 - AluJb SINE Alu -58 254 157 380 256 0 0 chr12 117875635 117875725 -26406764 - MLT1F1 LTR MaLR -442 125 36 657 160 45 0 chr12 117875726 117875870 -26406619 - L1MC3 LINE L1 -688 7097 6948 1416 175 29 54 chr12 117876050 117876364 -26406125 - AluJb SINE Alu -6 306 1 624 231 6 0 chr12 117876604 117876985 -26405504 + (TGGA)n Simple_repeat Simple_repeat 1 383 0 1894 132 0 65 chr12 117877030 117877355 -26405134 - AluSx SINE Alu -8 304 1 591 239 98 23 chr12 117877476 117877690 -26404799 - MIR SINE MIR -3 259 35 302 317 58 17 chr12 117877906 117878026 -26404463 - L1MDa LINE L1 -3975 2565 2441 2003 125 3 37 chr12 117878026 117878347 -26404142 - AluSx SINE Alu 0 312 3 606 282 43 27 chr12 117879416 117879604 -26402885 + MIR SINE MIR 17 207 -55 1870 153 7 0 chr12 117880100 117880388 -26402101 + AluJo SINE Alu 1 290 -22 476 264 168 15 chr12 117880400 117880597 -26401892 - MIR SINE MIR -16 246 20 403 297 29 69 chr12 117880649 117880824 -26401665 + MER91A DNA MER1_type 1 168 -28 1677 151 0 75 chr12 117880938 117881283 -26401206 - AluJb SINE Alu 0 312 1 290 278 24 63 chr12 117882041 117882167 -26400322 + MIR3 SINE MIR 1 121 -87 2929 171 25 90 chr12 117882265 117882358 -26400131 + MER63C DNA MER1_type 32 129 -931 1959 129 7 23 chr12 117882358 117882661 -26399828 - AluJb SINE Alu -14 298 1 2929 171 25 90 chr12 117882661 117883026 -26399463 + MER63C DNA MER1_type 129 516 -544 1693 160 27 17 chr12 117883026 117883326 -26399163 + AluJo SINE Alu 1 303 -9 2929 171 25 90 chr12 117883326 117883374 -26399115 + MER63C DNA MER1_type 516 566 -494 2268 104 0 0 chr12 117883374 117883681 -26398808 - AluY SINE Alu -4 307 1 2106 125 0 20 chr12 117883681 117883984 -26398505 - AluSx SINE Alu -15 297 1 2929 171 25 90 chr12 117883984 117884339 -26398150 + MER63C DNA MER1_type 564 840 -90 2062 113 3 27 chr12 117884463 117884763 -26397726 - AluSq SINE Alu -20 293 1 1837 178 0 0 chr12 117884765 117885051 -26397438 - AluJb SINE Alu -22 290 5 1187 257 110 48 chr12 117885104 117885668 -26396821 + MER21B LTR ERV1 141 739 -124 296 243 0 14 chr12 117885673 117885743 -26396746 + MER63C DNA MER1_type 843 911 -19 307 261 98 0 chr12 117885831 117885923 -26396566 - L2 LINE L2 0 3313 3213 564 308 92 13 chr12 117886009 117886368 -26396121 + LTR16A1 LTR ERVL 73 463 -28 416 346 73 35 chr12 117886375 117886664 -26395825 - L2 LINE L2 -94 3219 2920 348 366 12 16 chr12 117886868 117887119 -26395370 + L1MC4a LINE L1 5637 5886 -1922 196 278 56 0 chr12 117887220 117887274 -26395215 + L2 LINE L2 3251 3307 -6 243 0 0 0 chr12 117887281 117887308 -26395181 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 554 212 0 3 chr12 117887404 117887543 -26394946 - L1ME1 LINE L1 0 6166 6041 1835 130 10 47 chr12 117887867 117888167 -26394322 + AluJb SINE Alu 1 289 -23 2123 106 10 10 chr12 117888171 117888306 -26394183 + AluSx SINE Alu 1 135 -177 2329 68 0 7 chr12 117888306 117888624 -26393865 + AluY SINE Alu 1 311 0 2123 106 10 10 chr12 117888624 117888789 -26393700 + AluSx SINE Alu 134 301 -11 195 190 0 0 chr12 117889802 117889860 -26392629 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 608 310 30 15 chr12 117889897 117890097 -26392392 + MIR SINE MIR 15 217 -45 183 42 0 0 chr12 117890158 117890182 -26392307 + (TTG)n Simple_repeat Simple_repeat 2 25 0 438 217 95 39 chr12 117890306 117890490 -26391999 + MIR SINE MIR 32 250 -12 236 191 0 0 chr12 117890456 117890498 -26391991 + L2 LINE L2 3221 3262 -10 * 1956 155 0 22 chr12 117890704 117891021 -26391468 - AluSx SINE Alu -2 310 1 515 366 51 18 chr12 117891453 117891789 -26390700 - L2 LINE L2 -2 3270 2924 1920 146 17 0 chr12 117891855 117892156 -26390333 + AluJb SINE Alu 1 306 -6 347 223 32 32 chr12 117892216 117892310 -26390179 - MIR SINE MIR -88 174 81 2137 113 0 7 chr12 117892349 117892649 -26389840 - AluSx SINE Alu -14 298 1 814 176 0 40 chr12 117892649 117892797 -26389692 - AluJo SINE Alu -170 142 1 317 250 0 0 chr12 117892837 117892905 -26389584 + MIR SINE MIR 78 145 -63 316 302 101 25 chr12 117893408 117893521 -26388968 + MIR SINE MIR 92 222 -40 2128 118 0 0 chr12 117893521 117893817 -26388672 - AluSx SINE Alu -16 296 1 703 253 17 17 chr12 117893817 117893995 -26388494 - MIR SINE MIR -3 259 82 208 351 26 23 chr12 117894859 117895000 -26387489 + MIR SINE MIR 76 215 -47 919 131 0 21 chr12 117895054 117895199 -26387290 + FLAM_C SINE Alu 1 142 -1 197 224 0 75 chr12 117895227 117895294 -26387195 + MIR SINE MIR 86 147 -115 245 197 0 221 chr12 117895701 117895823 -26386666 + MIR3 SINE MIR 64 158 -50 423 325 18 0 chr12 117895826 117895992 -26386497 - MER117 DNA MER1_type 0 197 29 681 247 53 53 chr12 117896118 117896340 -26386149 - MIR SINE MIR -2 260 38 1996 151 0 0 chr12 117896340 117896639 -26385850 + AluSx SINE Alu 1 299 -13 436 277 6 9 chr12 117896759 117896924 -26385565 - MIR SINE MIR -62 146 17 259 287 129 0 chr12 117896915 117897016 -26385473 + L2 LINE L2 3141 3254 -18 * 2034 126 3 0 chr12 117897387 117897702 -26384787 + AluSq SINE Alu 1 316 0 445 326 62 7 chr12 117897876 117898020 -26384469 + MIR3 SINE MIR 18 169 -39 304 282 39 29 chr12 117898160 117898263 -26384226 - L2 LINE L2 -1 3271 3168 389 294 46 1 chr12 117898440 117898571 -26383918 - L1MC4 LINE L1 0 8041 7851 292 236 42 0 chr12 117898749 117898821 -26383668 - MLT1J2 LTR MaLR -118 332 258 2109 110 0 3 chr12 117898889 117899190 -26383299 - AluJb SINE Alu -12 300 1 206 250 0 0 chr12 117899442 117899486 -26383003 - L2 LINE L2 -5 3308 3265 442 213 65 19 chr12 117899607 117899715 -26382774 - MIR SINE MIR -79 129 17 493 316 0 0 chr12 117899796 117899935 -26382554 - MIR SINE MIR -48 214 76 355 360 57 19 chr12 117900818 117901029 -26381460 + MIR SINE MIR 41 259 -3 1072 92 7 0 chr12 117901111 117901252 -26381237 - AluSq/x SINE Alu -167 146 5 416 260 39 39 chr12 117901297 117901424 -26381065 - MIR SINE MIR -62 146 20 343 172 0 69 chr12 117901492 117901579 -26380910 - MER117 DNA MER1_type -49 148 68 386 261 41 94 chr12 117901579 117901728 -26380761 + MIR SINE MIR 8 149 -59 1059 295 56 39 chr12 117901835 117901981 -26380508 - L2 LINE L2 -1 3312 3170 2270 79 22 32 chr12 117901981 117902296 -26380193 + AluSx SINE Alu 1 312 0 1059 295 56 39 chr12 117902296 117902617 -26379872 - L2 LINE L2 -143 3170 2837 643 310 129 16 chr12 117903074 117903384 -26379105 + L2 LINE L2 2928 3272 0 1907 152 3 3 chr12 117903456 117903758 -26378731 + AluJo SINE Alu 11 312 0 272 247 27 14 chr12 117903850 117903923 -26378566 - MIR SINE MIR -112 150 77 891 346 96 0 chr12 117904014 117904410 -26378079 - L2 LINE L2 -4 3268 2835 246 236 0 0 chr12 117904759 117904814 -26377675 - MIR3 SINE MIR -2 206 152 237 226 151 11 chr12 117904817 117904910 -26377579 - MER5B DNA MER1_type -4 174 69 322 227 11 34 chr12 117904910 117904998 -26377491 - MIR3 SINE MIR -53 155 70 * 450 284 136 15 chr12 117904992 117905196 -26377293 + MIR SINE MIR 8 239 -23 672 257 68 10 chr12 117905782 117905988 -26376501 - MIR SINE MIR -12 250 33 316 319 22 29 chr12 117906275 117906413 -26376076 + MIR SINE MIR 113 249 -13 282 149 45 30 chr12 117906478 117906545 -26375944 + MIR SINE MIR 96 163 -99 401 133 67 0 chr12 117906548 117906623 -26375866 + MIR SINE MIR 120 199 -63 281 261 11 43 chr12 117906667 117906759 -26375730 + MIR SINE MIR 162 250 -12 23 0 0 0 chr12 117907042 117907065 -26375424 + GC_rich Low_complexity Low_complexity 1 23 0 38 107 0 0 chr12 117907163 117907313 -26375176 + GC_rich Low_complexity Low_complexity 1 150 0 21 95 0 0 chr12 117907754 117907817 -26374672 + GC_rich Low_complexity Low_complexity 1 63 0 24 32 0 0 chr12 117907908 117907939 -26374550 + GC_rich Low_complexity Low_complexity 1 31 0 351 344 113 11 chr12 117910129 117910315 -26372174 - MIR SINE MIR -44 218 14 215 326 101 16 chr12 117910692 117910821 -26371668 - L2 LINE L2 -189 3083 2944 580 298 110 14 chr12 117911205 117911423 -26371066 + MIR SINE MIR 15 253 -9 22 0 0 0 chr12 117911965 117911987 -26370502 + GC_rich Low_complexity Low_complexity 1 22 0 271 291 111 8 chr12 117912286 117912403 -26370086 - MIR3 SINE MIR -65 143 15 345 250 36 54 chr12 117912479 117912591 -26369898 - MIR SINE MIR -87 175 66 337 233 80 62 chr12 117913158 117913343 -26369146 + MIR SINE MIR 21 212 -50 233 317 37 24 chr12 117913909 117913991 -26368498 - L2 LINE L2 -1 3271 3189 305 325 69 25 chr12 117914105 117914265 -26368224 - L2 LINE L2 -36 3236 3070 274 297 81 27 chr12 117914313 117914461 -26368028 - MIR SINE MIR -27 235 80 467 228 95 53 chr12 117914666 117914855 -26367634 - MER117 DNA MER1_type 0 197 1 407 335 46 28 chr12 117915057 117915275 -26367214 - MIR SINE MIR -1 261 40 277 363 33 23 chr12 117915310 117915525 -26366964 - L2 LINE L2 -214 3058 2842 284 203 0 62 chr12 117915692 117915756 -26366733 + L2 LINE L2 3254 3313 0 210 380 8 23 chr12 117917405 117917534 -26364955 + L2 LINE L2 2868 2994 -278 379 270 40 16 chr12 117917853 117917979 -26364510 + MIR SINE MIR 19 147 -115 222 128 0 0 chr12 117918095 117918134 -26364355 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 473 236 0 69 chr12 117918255 117918399 -26364090 - MIR SINE MIR -109 153 20 257 304 22 0 chr12 117918376 117918468 -26364021 - MIR3 SINE MIR -47 161 68 * 460 304 56 31 chr12 117918460 117918696 -26363793 - MIR SINE MIR 0 262 19 198 0 0 0 chr12 117919386 117919408 -26363081 + (A)n Simple_repeat Simple_repeat 1 22 0 198 287 21 59 chr12 117919410 117919567 -26362922 + MIR3 SINE MIR 2 151 -111 299 262 95 0 chr12 117919691 117919775 -26362714 - MIR SINE MIR -168 94 3 240 286 107 65 chr12 117920165 117920356 -26362133 - MIR SINE MIR -62 146 5 222 291 0 0 chr12 117920857 117920912 -26361577 - MIR SINE MIR -114 148 94 255 290 46 53 chr12 117921245 117921376 -26361113 + MIR SINE MIR 101 230 -32 224 338 20 54 chr12 117921536 117921684 -26360805 - MIR3 SINE MIR -63 145 3 205 175 95 48 chr12 117921941 117922004 -26360485 + L2 LINE L2 3187 3252 -20 442 273 123 26 chr12 117923136 117923290 -26359199 - MIR SINE MIR -85 177 9 446 216 26 35 chr12 117923483 117923599 -26358890 + MIR SINE MIR 35 149 -113 190 269 46 56 chr12 117924082 117924190 -26358299 + MIR SINE MIR 30 136 -72 497 317 16 44 chr12 117924204 117924387 -26358102 - MIR SINE MIR -37 225 48 215 291 155 10 chr12 117925200 117925303 -26357186 + MIR3 SINE MIR 15 132 -76 418 326 89 0 chr12 117926171 117926395 -26356094 - L2 LINE L2 -106 3207 2964 988 167 118 69 chr12 117926418 117926672 -26355817 + MER33 DNA MER1_type 23 294 -2291 2367 54 0 10 chr12 117926672 117926970 -26355519 - AluY SINE Alu -16 295 1 988 167 118 69 chr12 117926970 117927003 -26355486 + MER33 DNA MER1_type 294 324 0 350 322 89 33 chr12 117927013 117927202 -26355287 - L2 LINE L2 -350 2964 2787 1810 155 17 0 chr12 117927202 117927493 -26354996 + AluJo SINE Alu 6 301 -11 350 322 89 33 chr12 117927493 117927663 -26354826 - L2 LINE L2 -527 2787 2585 198 103 0 0 chr12 117927864 117927893 -26354596 + (A)n Simple_repeat Simple_repeat 1 29 0 259 164 68 14 chr12 117927895 117927968 -26354521 - L1ME4a LINE L1 -16 6105 6029 188 260 80 0 chr12 117928002 117928052 -26354437 - MIR SINE MIR -200 62 9 207 350 164 11 chr12 117928548 117928725 -26353764 + MIR SINE MIR 59 262 0 314 207 92 23 chr12 117929650 117929737 -26352752 - MIR SINE MIR -57 151 59 218 163 0 102 chr12 117929911 117929960 -26352529 + L2 LINE L2 3247 3290 -23 260 283 23 35 chr12 117931228 117931374 -26351115 + GA-rich Low_complexity Low_complexity 1 144 0 298 261 35 17 chr12 117932074 117932189 -26350300 - MIR3 SINE MIR -18 190 74 241 293 12 49 chr12 117932651 117932733 -26349756 + L2 LINE L2 3194 3272 0 341 248 19 29 chr12 117933033 117933138 -26349351 + MIR SINE MIR 42 145 -117 261 318 12 0 chr12 117933865 117933950 -26348539 + MIR SINE MIR 59 144 -64 324 330 194 13 chr12 117933968 117934344 -26348145 - L2 LINE L2 -3 3269 2826 205 321 0 0 chr12 117935837 117935893 -26346596 + CT-rich Low_complexity Low_complexity 2 57 0 493 269 49 67 chr12 117938045 117938268 -26344221 + Charlie8 DNA MER1_type 91 309 -2108 22 35 0 0 chr12 117938282 117938311 -26344178 + AT_rich Low_complexity Low_complexity 1 29 0 891 316 104 5 chr12 117938489 117938929 -26343560 - L1MC4a LINE L1 -1896 6148 5665 183 42 0 0 chr12 117938929 117938953 -26343536 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 679 181 0 0 chr12 117938956 117939072 -26343417 - FLAM_C SINE Alu -27 116 1 282 289 89 41 chr12 117939103 117939473 -26343016 - L1MC4a LINE L1 -743 5639 5243 2176 113 0 0 chr12 117939473 117939774 -26342715 + AluSx SINE Alu 1 301 -11 282 289 89 41 chr12 117939774 117939839 -26342650 - L1MC4a LINE L1 -1139 5243 5183 949 155 132 9 chr12 117939887 117940100 -26342389 - L1MB8 LINE L1 -8 6170 5932 308 143 89 0 chr12 117940102 117940158 -26342331 - L1MB3 LINE L1 -290 5893 5833 998 141 197 5 chr12 117940163 117940361 -26342128 - MER46A DNA MER2_type 0 236 1 2056 116 7 3 chr12 117940367 117940661 -26341828 - AluSx SINE Alu -17 295 1 646 302 146 38 chr12 117940662 117942355 -26340134 - L1MC4a LINE L1 -1399 4983 2946 2125 106 3 0 chr12 117942355 117942672 -26339817 - AluSp SINE Alu 0 318 1 646 302 146 38 chr12 117942672 117943361 -26339128 - L1MC4a LINE L1 -3436 2946 2332 568 117 0 0 chr12 117943655 117943732 -26338757 + AluJ/FLAM SINE Alu 6 82 -230 800 304 102 23 chr12 117943897 117944288 -26338201 - HAL1b LINE L1 -679 669 248 443 304 122 14 chr12 117945165 117945379 -26337110 - L1MC/D LINE L1 -1993 5815 5579 313 304 18 18 chr12 117945855 117945967 -26336522 + MIR3 SINE MIR 87 198 -10 223 247 104 0 chr12 117946534 117946611 -26335878 + MIR SINE MIR 79 163 -99 247 275 92 61 chr12 117946634 117946765 -26335724 + MIR SINE MIR 21 155 -107 442 112 303 0 chr12 117947569 117947658 -26334831 + FLAM_A SINE Alu 24 139 -3 1041 205 44 0 chr12 117947722 117947927 -26334562 - MER58A DNA MER1_type 0 224 11 1765 170 3 13 chr12 117947931 117948237 -26334252 - AluJb SINE Alu -9 303 1 5257 235 98 20 chr12 117948237 117948566 -26333923 - L1 LINE L1 -818 5328 5026 2267 79 3 49 chr12 117948566 117948894 -26333595 - AluSp SINE Alu 0 313 1 5257 235 98 20 chr12 117948894 117950370 -26332119 - L1 LINE L1 -1120 5026 3382 305 260 271 17 chr12 117950438 117950619 -26331870 + L1M4 LINE L1 4490 4716 -1430 365 304 51 7 chr12 117950708 117950968 -26331521 + L1M4 LINE L1 4907 5268 -878 284 297 99 0 chr12 117952428 117952539 -26329950 + MIR SINE MIR 67 188 -74 237 219 61 12 chr12 117952547 117952629 -26329860 + L1PA13 LINE L1 554 639 -6148 249 197 49 16 chr12 117953758 117953819 -26328670 + MER102b DNA MER1_type 1 63 -278 442 287 48 10 chr12 117954283 117954492 -26327997 - MIR3 SINE MIR -37 225 1 254 338 73 23 chr12 117955037 117955386 -26327103 + L2 LINE L2 2657 3067 -246 415 260 22 76 chr12 117955575 117955766 -26326723 - MLT1G3 LTR MaLR -293 284 78 256 334 118 9 chr12 117956438 117956567 -26325922 + MIR SINE MIR 5 146 -70 2203 202 60 49 chr12 117956568 117957102 -26325387 - MLT1F LTR MaLR 0 542 3 1818 138 30 0 chr12 117957235 117957504 -26324985 + AluJb SINE Alu 22 298 -14 729 227 22 16 chr12 117958445 117958630 -26323859 - MER20 DNA MER1_type 0 219 34 229 325 105 31 chr12 117958670 117958898 -26323591 + L2 LINE L2 2820 3064 -208 281 279 27 45 chr12 117959195 117959306 -26323183 - MIR SINE MIR -67 195 87 213 251 50 0 chr12 117959399 117959470 -26323019 - MIR SINE MIR -61 147 86 189 278 122 22 chr12 117959816 117959906 -26322583 - MIR SINE MIR -60 202 104 565 310 9 13 chr12 117959932 117960128 -26322361 + L1PA8A LINE L1 5460 5658 -473 1285 183 0 51 chr12 117960159 117960416 -26322073 - AluJo SINE Alu -9 303 60 463 100 0 0 chr12 117960527 117960587 -26321902 + AluY SINE Alu 190 249 -62 1177 141 48 0 chr12 117960587 117960621 -26321868 + AluSg/x SINE Alu 85 116 -196 203 0 37 0 chr12 117960621 117960648 -26321841 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1177 141 48 0 chr12 117960648 117960819 -26321670 + AluSg/x SINE Alu 116 300 -12 195 190 0 0 chr12 117961841 117961899 -26320590 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 221 321 71 12 chr12 117961936 117962020 -26320469 + MIR SINE MIR 15 103 -159 283 207 117 45 chr12 117962210 117962321 -26320168 - MIR SINE MIR -107 155 37 868 123 221 41 chr12 117962345 117962540 -26319949 - AluJo SINE Alu -13 299 70 498 302 117 10 chr12 117963084 117963289 -26319200 - MIR SINE MIR -21 241 15 1318 113 11 0 chr12 117963764 117963950 -26318539 - AluSx SINE Alu -111 201 14 21 36 0 0 chr12 117964408 117964436 -26318053 + AT_rich Low_complexity Low_complexity 1 28 0 685 210 102 0 chr12 117964552 117964719 -26317770 + LTR26E LTR ERV1 115 298 -324 360 304 0 0 chr12 117964719 117964945 -26317544 + (CTA)n Simple_repeat Simple_repeat 1 226 0 427 219 8 8 chr12 117964995 117965118 -26317371 + (CTA)n Simple_repeat Simple_repeat 3 125 0 1161 273 73 3 chr12 117966136 117966521 -26315968 + L1ME3A LINE L1 5759 6170 0 683 165 159 47 chr12 117968600 117968770 -26313719 + MER91B DNA MER1_type 2 190 0 331 322 187 0 chr12 117969678 117969849 -26312640 - MIR SINE MIR -9 253 51 184 200 36 18 chr12 117970122 117970177 -26312312 - MIR SINE MIR -63 145 90 213 213 0 0 chr12 117970373 117970420 -26312069 - MIR SINE MIR -93 169 123 242 230 162 0 chr12 117971085 117971159 -26311330 + MIR3 SINE MIR 109 194 -14 331 224 15 90 chr12 117971350 117971484 -26311005 - MIR SINE MIR -63 145 22 288 298 12 0 chr12 117972331 117972415 -26310074 + MIR3 SINE MIR 71 155 -53 242 133 83 17 chr12 117972556 117972616 -26309873 + MIR SINE MIR 83 146 -62 1735 157 11 3 chr12 117972624 117972911 -26309578 + AluJo SINE Alu 5 293 -19 480 187 42 90 chr12 117973076 117973198 -26309291 - MER103 DNA DNA -1 165 52 1785 116 0 12 chr12 117973198 117973449 -26309040 - AluSx SINE Alu -64 248 1 480 187 42 90 chr12 117973449 117973492 -26308997 - MER103 DNA DNA -114 52 8 226 211 0 6 chr12 117973586 117973649 -26308840 + MIR SINE MIR 92 132 -76 * 229 226 57 0 chr12 117973635 117973688 -26308801 - MIR SINE MIR -114 94 39 340 213 106 0 chr12 117973806 117973891 -26308598 - MIR SINE MIR -61 147 73 307 283 11 11 chr12 117974433 117974525 -26307964 + MIR SINE MIR 62 153 -109 1185 252 126 40 chr12 117974532 117974961 -26307528 - MLT1L LTR MaLR 0 615 150 466 260 63 0 chr12 117976010 117976137 -26306352 + MIR SINE MIR 23 157 -105 207 0 0 0 chr12 117976224 117976247 -26306242 + (CA)n Simple_repeat Simple_repeat 2 24 0 376 285 69 15 chr12 117976357 117976487 -26306002 - MLT1L LTR MaLR -358 191 55 191 346 115 0 chr12 117976542 117976646 -26305843 + L3 LINE CR1 1418 1533 -44 1043 210 106 84 chr12 117976647 117976884 -26305605 + MER113 DNA MER1_type? 2 232 -289 2128 116 0 28 chr12 117976884 117977204 -26305285 - AluSx SINE Alu -1 311 1 1043 210 106 84 chr12 117977204 117977475 -26305014 + MER113 DNA MER1_type? 232 521 0 1137 144 0 11 chr12 117977675 117977863 -26304626 + AluSg/x SINE Alu 119 304 -6 360 277 223 9 chr12 117978043 117978263 -26304226 + MLT1L LTR MaLR 1 267 -348 381 255 83 13 chr12 117978456 117978613 -26303876 + MLT1L LTR MaLR 442 609 -6 1678 119 46 69 chr12 117978700 117979003 -26303486 - AluSx SINE Alu -16 296 1 252 287 63 9 chr12 117979054 117979168 -26303321 - MIR SINE MIR -63 145 30 2296 103 0 3 chr12 117979173 117979483 -26303006 - AluSq SINE Alu -4 309 1 274 254 0 16 chr12 117980200 117980263 -26302226 - MIR SINE MIR -55 153 92 2644 68 51 23 chr12 117980601 117980955 -26301534 + THE1B LTR MaLR 1 364 0 180 77 0 0 chr12 117981523 117981549 -26300940 + (CCA)n Simple_repeat Simple_repeat 2 27 0 180 172 0 0 chr12 117982469 117982498 -26299991 - L2 LINE L2 -22 3291 3263 286 331 83 14 chr12 117982500 117982645 -26299844 - MIR SINE MIR -87 175 21 201 288 34 0 chr12 117982833 117982892 -26299597 - MIR SINE MIR -58 150 90 772 136 19 93 chr12 117983150 117983180 -26299309 - L1MB4 LINE L1 0 6180 6149 2021 106 10 45 chr12 117983180 117983492 -26298997 + AluSx SINE Alu 1 301 -11 252 0 0 0 chr12 117983493 117983521 -26298968 + (TG)n Simple_repeat Simple_repeat 2 29 0 772 136 19 93 chr12 117983521 117983650 -26298839 - L1MB4 LINE L1 -30 6150 6031 1559 159 59 24 chr12 117983650 117983940 -26298549 - AluJb SINE Alu -12 300 1 247 170 0 0 chr12 117983943 117983990 -26298499 - L1MB4 LINE L1 -369 5805 5759 28 61 0 0 chr12 117983990 117984039 -26298450 + AT_rich Low_complexity Low_complexity 1 49 0 759 115 25 8 chr12 117984051 117984173 -26298316 - AluSc SINE Alu -12 297 174 1607 126 115 4 chr12 117984483 117984752 -26297737 + AluJo SINE Alu 1 299 -13 327 137 0 0 chr12 117984774 117984825 -26297664 - MIR SINE MIR -92 170 120 439 289 42 21 chr12 117985154 117985296 -26297193 - MIR SINE MIR -33 229 85 288 247 35 12 chr12 117985704 117985789 -26296700 - MER102b DNA MER1_type 0 1330 1244 744 238 32 11 chr12 117985824 117986013 -26296476 - MER102b DNA MER1_type -51 290 98 1649 150 4 0 chr12 117986056 117986310 -26296179 + AluJb SINE Alu 2 256 -56 1130 156 0 0 chr12 117987686 117987866 -26294623 - 7SLRNA srpRNA srpRNA -1 319 140 1093 150 43 0 chr12 117987904 117988091 -26294398 + MER20 DNA MER1_type 24 218 -1 339 223 97 10 chr12 117988260 117988363 -26294126 - MER117 DNA MER1_type -38 159 48 609 284 5 30 chr12 117988449 117988646 -26293843 + MER117 DNA MER1_type 1 192 -5 1347 232 93 69 chr12 117989263 117989333 -26293156 + MLT1H LTR MaLR 35 102 -447 915 130 8 0 chr12 117989333 117989464 -26293025 + FLAM_C SINE Alu 1 132 -1 1347 232 93 69 chr12 117989464 117989833 -26292656 + MLT1H LTR MaLR 102 490 -59 2033 130 7 0 chr12 117989833 117990133 -26292356 + AluSx SINE Alu 1 302 -10 1347 232 93 69 chr12 117990133 117990187 -26292302 + MLT1H LTR MaLR 490 541 -8 2132 108 0 7 chr12 117990212 117990517 -26291972 - AluSx SINE Alu -9 303 1 511 242 85 18 chr12 117990518 117990683 -26291806 + MIR SINE MIR 70 245 -17 2010 109 9 47 chr12 117990683 117991003 -26291486 + AluSq SINE Alu 1 308 -5 513 296 48 0 chr12 117991867 117992053 -26290436 - MER117 DNA MER1_type -2 195 1 192 77 0 0 chr12 117992376 117992402 -26290087 + (GGAGA)n Simple_repeat Simple_repeat 5 30 0 345 327 0 32 chr12 117992472 117992628 -26289861 + GA-rich Low_complexity Low_complexity 2 152 0 188 239 22 0 chr12 117993418 117993464 -26289025 - L3 LINE CR1 -2 1575 1529 2154 117 0 0 chr12 117993470 117993769 -26288720 + AluSq SINE Alu 1 299 -14 236 223 289 16 chr12 117993955 117994076 -26288413 - MER117 DNA MER1_type -42 155 2 220 277 109 8 chr12 117994096 117994215 -26288274 - MIR3 SINE MIR -63 145 15 327 322 140 28 chr12 117994318 117994461 -26288028 + L1ME4a LINE L1 5726 5884 -237 1703 143 3 41 chr12 117994472 117994793 -26287696 - AluJb SINE Alu 0 310 1 692 288 90 5 chr12 117994835 117995057 -26287432 - MIR SINE MIR 0 262 22 215 239 44 0 chr12 117995813 117995884 -26286605 - MIR SINE MIR -69 139 74 2199 92 0 7 chr12 117995894 117996188 -26286301 - AluSx SINE Alu -20 292 1 925 181 0 0 chr12 117996200 117996355 -26286134 - AluJb SINE Alu -24 288 134 366 158 0 0 chr12 117996480 117996537 -26285952 - FLAM_A SINE Alu -59 73 17 636 265 50 15 chr12 117996544 117996744 -26285745 - MIR SINE MIR -23 239 33 957 195 38 14 chr12 117996757 117996967 -26285522 + MER20 DNA MER1_type 4 218 -1 2283 87 13 0 chr12 117997885 117998183 -26284306 - AluSx SINE Alu -10 302 1 261 343 0 13 chr12 117998389 117998483 -26284006 - MIR SINE MIR -62 146 52 1789 168 3 16 chr12 117998483 117998662 -26283827 - AluJo SINE Alu 0 312 132 270 0 0 0 chr12 117998662 117998692 -26283797 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1998 101 7 14 chr12 117998692 117998979 -26283510 - AluSx SINE Alu -27 285 1 1789 168 3 16 chr12 117998979 117999114 -26283375 - AluJo SINE Alu -178 134 1 261 343 0 13 chr12 117999114 117999150 -26283339 - MIR SINE MIR -156 52 35 759 169 31 0 chr12 117999769 117999899 -26282590 + AluJo SINE Alu 2 135 -177 1613 179 3 23 chr12 117999899 117999997 -26282492 + AluJo SINE Alu 1 99 -213 2785 98 3 8 chr12 117999997 118000374 -26282115 + THE1C LTR MaLR 1 375 0 1613 179 3 23 chr12 118000374 118000576 -26281913 + AluJo SINE Alu 99 295 -17 1841 138 0 60 chr12 118000862 118001027 -26281462 - AluJb SINE Alu -11 301 163 2258 107 3 0 chr12 118001027 118001335 -26281154 - AluSq SINE Alu -4 309 1 1841 138 0 60 chr12 118001335 118001487 -26281002 - AluJb SINE Alu -149 163 3 444 51 0 0 chr12 118001544 118001603 -26280886 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 1685 170 0 37 chr12 118002169 118002492 -26279997 - AluJo SINE Alu -1 311 1 487 254 22 14 chr12 118002514 118002652 -26279837 + MER103 DNA DNA 2 140 -26 396 239 101 67 chr12 118002729 118002938 -26279551 - MER113 DNA MER1_type? 0 521 306 219 293 17 0 chr12 118003103 118003161 -26279328 + MIR SINE MIR 32 90 -172 221 274 65 0 chr12 118003350 118003412 -26279077 + MIR SINE MIR 37 102 -106 648 316 22 78 chr12 118003633 118003991 -26278498 + L2 LINE L2 2930 3267 -5 257 287 46 35 chr12 118004390 118004477 -26278012 - MER69A DNA AcHobo -88 89 2 2052 114 0 32 chr12 118004930 118005238 -26277251 - AluSx SINE Alu -14 298 1 690 191 88 7 chr12 118005412 118005559 -26276930 - AluJb SINE Alu -17 295 137 393 205 246 8 chr12 118005946 118006068 -26276421 - MIR SINE MIR -105 157 7 180 77 0 0 chr12 118006088 118006114 -26276375 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 258 140 0 0 chr12 118006114 118006164 -26276325 - MIR SINE MIR -132 130 81 1032 132 12 14 chr12 118006721 118007701 -26274788 + (TCCA)n Simple_repeat Simple_repeat 1 1155 0 196 262 0 0 chr12 118007919 118007961 -26274528 + MIR SINE MIR 221 262 0 255 211 0 0 chr12 118008135 118008187 -26274302 - L2 LINE L2 0 3313 3262 218 304 163 0 chr12 118008213 118008305 -26274184 + L2 LINE L2 3205 3311 -2 498 351 25 38 chr12 118009040 118009389 -26273100 + L2 LINE L2 2911 3256 -16 2100 134 0 0 chr12 118009389 118009695 -26272794 + AluSx SINE Alu 1 306 -6 498 351 25 38 chr12 118009695 118009712 -26272777 + L2 LINE L2 3256 3272 0 358 344 0 0 chr12 118010516 118010638 -26271851 + (TGAA)n Simple_repeat Simple_repeat 4 125 0 254 29 29 0 chr12 118010711 118010746 -26271743 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 321 298 16 8 chr12 118010823 118010944 -26271545 + (TGGA)n Simple_repeat Simple_repeat 3 124 0 290 194 15 0 chr12 118010958 118011025 -26271464 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 368 370 6 17 chr12 118011047 118011143 -26271346 + (TGGA)n Simple_repeat Simple_repeat 1 96 -83 2138 98 3 10 chr12 118011143 118011440 -26271049 + AluSg SINE Alu 1 295 -15 368 370 6 17 chr12 118011440 118011524 -26270965 + (TGGA)n Simple_repeat Simple_repeat 96 179 0 798 171 21 12 chr12 118011564 118012149 -26270340 + (TGGA)n Simple_repeat Simple_repeat 1 590 0 836 164 6 0 chr12 118012166 118012343 -26270146 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 22 0 0 0 chr12 118012770 118012792 -26269697 + GC_rich Low_complexity Low_complexity 1 22 0 403 299 140 14 chr12 118013152 118013359 -26269130 + MIR SINE MIR 15 247 -15 232 232 0 6 chr12 118013455 118013522 -26268967 - MIR SINE MIR -63 145 92 233 339 142 23 chr12 118013558 118013776 -26268713 + L2 LINE L2 2967 3210 -62 265 268 196 22 chr12 118013784 118013922 -26268567 - MIR SINE MIR -86 176 15 716 275 0 5 chr12 118014294 118014483 -26268006 + MIR SINE MIR 23 210 -52 2057 113 0 0 chr12 118014515 118014799 -26267690 + AluSx SINE Alu 7 290 -22 349 125 0 0 chr12 118014800 118014861 -26267628 + MIR SINE MIR 88 149 -59 338 336 74 0 chr12 118014892 118015041 -26267448 + MIR SINE MIR 13 172 -90 1055 209 0 32 chr12 118015768 118015988 -26266501 + MER20 DNA MER1_type 1 213 -6 739 190 14 0 chr12 118015994 118016136 -26266353 - MIR SINE MIR -91 171 28 380 247 0 0 chr12 118016310 118016407 -26266082 + MER20 DNA MER1_type 123 219 0 590 208 8 16 chr12 118016407 118016532 -26265957 - MIR SINE MIR -91 171 48 188 256 67 33 chr12 118016512 118016602 -26265887 - MIR SINE MIR -33 229 137 * 409 259 144 29 chr12 118016603 118016742 -26265747 + MIR SINE MIR 107 261 -1 273 219 61 24 chr12 118016889 118016971 -26265518 - MIR SINE MIR -70 192 108 228 293 0 0 chr12 118017056 118017114 -26265375 + (CA)n Simple_repeat Simple_repeat 2 59 0 2009 123 3 3 chr12 118017583 118017875 -26264614 - AluSx SINE Alu -20 292 1 658 218 67 11 chr12 118018066 118018245 -26264244 - L2 LINE L2 -4 3309 3121 392 289 114 38 chr12 118018411 118018530 -26263959 + MIR SINE MIR 22 131 -131 2408 49 7 7 chr12 118018530 118018836 -26263653 - AluY SINE Alu -5 306 1 392 289 114 38 chr12 118018836 118018927 -26263562 + MIR SINE MIR 131 248 -14 553 284 66 72 chr12 118019342 118019552 -26262937 + L2 LINE L2 2913 3122 -150 2058 109 7 7 chr12 118019552 118019845 -26262644 - AluSx SINE Alu -19 293 1 553 284 66 72 chr12 118019845 118019982 -26262507 + L2 LINE L2 3122 3258 -14 201 162 27 0 chr12 118020199 118020236 -26262253 + (TGGG)n Simple_repeat Simple_repeat 1 38 0 345 277 19 21 chr12 118020494 118020609 -26261880 - MIR SINE MIR -53 155 43 678 281 43 8 chr12 118020663 118020904 -26261585 + MIR SINE MIR 7 262 0 1325 97 40 26 chr12 118021561 118021788 -26260701 + L1MB7 LINE L1 5888 6117 -67 573 217 98 21 chr12 118021987 118022130 -26260359 + MER117 DNA MER1_type 1 154 -43 1932 115 7 11 chr12 118022191 118022477 -26260012 - AluSx SINE Alu -22 290 6 227 256 179 0 chr12 118022570 118022648 -26259841 + MIR SINE MIR 159 250 -12 845 202 16 16 chr12 118022781 118022969 -26259520 + MER20 DNA MER1_type 32 219 0 2277 83 6 13 chr12 118023297 118023611 -26258878 - AluSx SINE Alu 0 312 1 291 91 30 45 chr12 118023627 118023693 -26258796 + T-rich Low_complexity Low_complexity 4 68 0 1967 138 0 31 chr12 118023695 118023873 -26258616 - AluJb SINE Alu -3 309 144 1979 126 0 3 chr12 118023873 118024167 -26258322 - AluSx SINE Alu -15 297 5 1967 138 0 31 chr12 118024167 118024307 -26258182 - AluJb SINE Alu -168 144 1 271 188 29 0 chr12 118024582 118024651 -26257838 - AluS SINE Alu 0 302 232 323 239 9 80 chr12 118026361 118026474 -26256015 - MER31A LTR ERV1 -28 457 353 1746 177 0 0 chr12 118026686 118026986 -26255503 - AluJb SINE Alu -8 304 5 1570 118 106 0 chr12 118027376 118027622 -26254867 - AluSx SINE Alu -39 273 2 540 252 0 0 chr12 118027623 118027750 -26254739 + MIR SINE MIR 122 248 -14 1994 118 0 14 chr12 118027763 118028050 -26254439 + AluSx SINE Alu 1 283 -29 989 125 0 28 chr12 118027906 118028050 -26254439 + AluSg/x SINE Alu 142 315 0 307 0 0 0 chr12 118028050 118028084 -26254405 + (TAAAA)n Simple_repeat Simple_repeat 2 175 0 2325 82 16 13 chr12 118028658 118028964 -26253525 - AluSg SINE Alu -3 307 1 341 254 85 17 chr12 118029156 118029274 -26253215 + MIR SINE MIR 70 195 -67 1258 98 122 0 chr12 118030490 118030595 -26251894 - MER30 DNA MER1_type 0 230 139 192 40 0 0 chr12 118030595 118030620 -26251869 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1258 98 122 0 chr12 118030620 118030719 -26251770 - MER30 DNA MER1_type -91 139 1 21 0 0 0 chr12 118030759 118030780 -26251709 + AT_rich Low_complexity Low_complexity 1 21 0 2413 95 0 3 chr12 118030932 118031236 -26251253 + AluSg SINE Alu 1 303 -7 958 192 0 0 chr12 118031241 118031397 -26251092 + FRAM SINE Alu 1 155 -21 207 0 0 0 chr12 118031397 118031420 -26251069 + (CA)n Simple_repeat Simple_repeat 2 24 0 472 214 18 36 chr12 118031765 118031877 -26250612 + MIR SINE MIR 36 145 -63 567 217 98 21 chr12 118032145 118032288 -26250201 + MER117 DNA MER1_type 1 154 -43 2183 116 0 10 chr12 118032349 118032642 -26249847 - AluSx SINE Alu -22 290 1 561 311 44 0 chr12 118033459 118033639 -26248850 + L1ME LINE L1 5613 5800 -321 2020 148 0 13 chr12 118033640 118033945 -26248544 + AluSx SINE Alu 1 301 -11 573 237 178 0 chr12 118033945 118034097 -26248392 + AluJo/FRAM SINE Alu 134 312 0 738 151 22 22 chr12 118034097 118034276 -26248213 + GA-rich Low_complexity Low_complexity 2 180 0 183 80 0 0 chr12 118034345 118034370 -26248119 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1843 162 0 4 chr12 118034427 118034728 -26247761 - AluJb SINE Alu 0 305 6 244 256 179 0 chr12 118034821 118034899 -26247590 + MIR SINE MIR 159 250 -12 913 145 135 16 chr12 118035027 118035220 -26247269 + MER20 DNA MER1_type 4 219 0 959 185 28 23 chr12 118035882 118036098 -26246391 - MER20 DNA MER1_type -2 217 1 502 248 18 0 chr12 118036315 118036428 -26246061 - L2 LINE L2 -1 3312 3198 298 263 88 26 chr12 118036553 118036667 -26245822 - MIR SINE MIR -39 223 103 291 267 0 17 chr12 118037978 118038094 -26244395 + (CCG)n Simple_repeat Simple_repeat 2 115 0 25 0 0 0 chr12 118038152 118038177 -26244312 + GC_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr12 118038226 118038251 -26244238 + GC_rich Low_complexity Low_complexity 1 25 0 1530 188 134 27 chr12 118038701 118039253 -26243236 + MER51B LTR ERV1 1 377 0 769 281 64 62 chr12 118039510 118039816 -26242673 - L2 LINE L2 -32 3281 2972 1492 85 28 14 chr12 118039816 118040028 -26242461 + AluSq SINE Alu 87 301 -12 769 281 64 62 chr12 118040028 118040176 -26242313 - L2 LINE L2 -341 2972 2826 2517 65 3 16 chr12 118040228 118040537 -26241952 - AluSg SINE Alu -5 305 1 1708 181 16 13 chr12 118040606 118040916 -26241573 - AluJo SINE Alu -1 311 1 202 194 0 0 chr12 118041420 118041456 -26241033 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 718 213 11 64 chr12 118041622 118041768 -26240721 + FRAM SINE Alu 1 132 -180 2442 80 3 3 chr12 118041768 118042068 -26240421 - AluY SINE Alu -11 300 1 718 213 11 64 chr12 118042068 118042109 -26240380 + FRAM SINE Alu 132 174 -2 489 263 15 15 chr12 118042144 118042277 -26240212 - Charlie8 DNA MER1_type -2247 170 38 840 241 10 0 chr12 118042342 118042545 -26239944 - L1MC4 LINE L1 -141 7901 7697 2368 92 0 3 chr12 118042545 118042850 -26239639 - AluSx SINE Alu -8 304 1 622 158 0 153 chr12 118042851 118043047 -26239442 - L1MC4 LINE L1 -491 7551 7386 2302 81 17 0 chr12 118043059 118043357 -26239132 - AluY SINE Alu -8 303 1 975 146 7 26 chr12 118043357 118043508 -26238981 - FRAM SINE Alu -16 160 13 538 245 48 0 chr12 118043509 118043656 -26238833 - L1MC4 LINE L1 -650 7392 7239 1265 163 77 12 chr12 118043657 118043714 -26238775 - L1MC4 LINE L1 -961 7081 7029 2314 113 0 0 chr12 118043714 118044016 -26238473 - AluSx SINE Alu -10 302 1 1265 163 77 12 chr12 118044016 118044204 -26238285 - L1MC4 LINE L1 -1013 7029 6820 1883 96 0 29 chr12 118044327 118044607 -26237882 - AluY SINE Alu -39 272 1 2046 129 0 14 chr12 118044622 118044909 -26237580 - AluSx SINE Alu -29 283 1 312 277 8 34 chr12 118045496 118045615 -26236874 + L3b LINE CR1 1217 1332 -251 1469 157 0 25 chr12 118045616 118045851 -26236638 + AluJb SINE Alu 1 229 -83 2506 90 0 0 chr12 118045851 118046161 -26236328 + AluY SINE Alu 1 311 0 420 222 0 0 chr12 118046161 118046242 -26236247 + AluJb SINE Alu 219 299 -13 2221 118 3 3 chr12 118046478 118046783 -26235706 + AluSx SINE Alu 1 305 -7 2007 129 0 57 chr12 118046849 118047167 -26235322 + AluJo SINE Alu 1 300 -12 2043 159 13 0 chr12 118047417 118047719 -26234770 + 7SLRNA srpRNA srpRNA 1 306 -14 235 225 14 0 chr12 118047791 118047862 -26234627 - L1M LINE L1 -855 5329 5258 743 134 0 8 chr12 118048192 118048311 -26234178 + FLAM_C SINE Alu 1 118 -15 1881 112 0 4 chr12 118048340 118048582 -26233907 - AluSx SINE Alu -71 241 1 1088 109 7 0 chr12 118048915 118049102 -26233387 + AluSg/x SINE Alu 137 324 0 203 279 173 10 chr12 118049236 118049340 -26233149 + MIR SINE MIR 9 129 -133 237 174 228 0 chr12 118049461 118049534 -26232955 - MIR SINE MIR -77 131 45 215 361 31 10 chr12 118050177 118050274 -26232215 - MIR SINE MIR -53 209 111 204 40 0 0 chr12 118050413 118050438 -26232051 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 198 227 147 13 chr12 118050466 118050541 -26231948 - L2 LINE L2 -41 3231 3147 2436 98 0 0 chr12 118050850 118051157 -26231332 - AluSq SINE Alu -6 307 1 1105 197 16 0 chr12 118051161 118051349 -26231140 - AluJo SINE Alu -14 298 108 249 239 239 9 chr12 118051363 118051472 -26231017 + MER102a DNA MER1_type 197 330 0 442 320 60 30 chr12 118052118 118052168 -26230321 - MIR SINE MIR -16 246 199 2317 100 3 0 chr12 118052168 118052459 -26230030 - AluSg SINE Alu -18 292 1 442 320 60 30 chr12 118052459 118052642 -26229847 - MIR SINE MIR -63 199 6 836 208 0 0 chr12 118053286 118053430 -26229059 + FRAM SINE Alu 2 145 -31 2252 96 14 0 chr12 118053649 118053940 -26228549 + AluSp SINE Alu 1 295 -18 230 62 0 0 chr12 118053994 118054026 -26228463 - MADE1 DNA Mariner -48 32 1 593 121 139 36 chr12 118054219 118054384 -26228105 - Tigger3(Golem) DNA MER2_type -568 2461 2280 2319 93 3 0 chr12 118054399 118054689 -26227800 - AluSx SINE Alu -21 291 1 1091 158 0 23 chr12 118054703 118054880 -26227609 + FRAM SINE Alu 1 168 -8 743 217 12 6 chr12 118055666 118055832 -26226657 - MIR SINE MIR -62 200 34 513 234 117 18 chr12 118055960 118056131 -26226358 + MIR SINE MIR 75 262 0 238 364 86 0 chr12 118056606 118056757 -26225732 - MIR SINE MIR -19 243 80 * 281 246 108 85 chr12 118056746 118056876 -26225613 + MER91B DNA MER1_type 7 139 -51 1646 142 29 0 chr12 118056878 118057117 -26225372 - AluSx SINE Alu -10 302 57 203 224 119 45 chr12 118057126 118057193 -26225296 + MER91A DNA MER1_type 114 185 -11 291 289 53 0 chr12 118057806 118057920 -26224569 - L2 LINE L2 -5 3267 3148 284 315 0 11 chr12 118059280 118059369 -26223120 - MIR SINE MIR -76 186 99 410 252 59 0 chr12 118059393 118059528 -26222961 + MIR SINE MIR 107 249 -13 2241 109 0 26 chr12 118059540 118059851 -26222638 - AluJb SINE Alu -9 303 1 1808 206 80 54 chr12 118059851 118060110 -26222379 - L1MC4 LINE L1 -1026 7016 6765 2454 100 0 0 chr12 118060110 118060420 -26222069 - AluSg SINE Alu 0 310 1 1808 206 80 54 chr12 118060420 118060555 -26221934 - L1MC4 LINE L1 -1277 6765 6635 2256 96 38 0 chr12 118060555 118060848 -26221641 + AluSc SINE Alu 1 304 -5 1808 206 80 54 chr12 118060848 118060993 -26221496 - L1MC4 LINE L1 -1407 6635 6459 1984 166 0 0 chr12 118061185 118061487 -26221002 - AluJo SINE Alu -10 302 1 288 216 108 0 chr12 118062124 118062198 -26220291 + MIR SINE MIR 48 129 -133 636 193 133 171 chr12 118062205 118062328 -26220161 - MLT1D LTR MaLR -41 464 338 1022 240 124 0 chr12 118062328 118062595 -26219894 + AluJo SINE Alu 2 301 -1 2408 63 18 0 chr12 118062605 118062890 -26219599 + AluY SINE Alu 1 290 -21 636 193 133 171 chr12 118062890 118063019 -26219470 - MLT1D LTR MaLR -176 329 173 344 300 29 36 chr12 118063019 118063159 -26219330 + MIR SINE MIR 123 261 -1 1250 132 14 38 chr12 118063679 118063892 -26218597 + AluJo SINE Alu 84 291 -21 2296 125 0 0 chr12 118063910 118064222 -26218267 - AluSx SINE Alu 0 312 1 1930 130 6 48 chr12 118064798 118065113 -26217376 - AluSx SINE Alu -10 302 1 1645 128 8 23 chr12 118065119 118065376 -26217113 - AluSq SINE Alu -15 298 46 1413 133 0 0 chr12 118065419 118065607 -26216882 + AluSg/x SINE Alu 104 291 -21 373 269 192 11 chr12 118065669 118065851 -26216638 - L2 LINE L2 -202 3070 2856 220 326 92 0 chr12 118066374 118066472 -26216017 + MIR3 SINE MIR 62 168 -40 2300 106 3 3 chr12 118066509 118066810 -26215679 + AluSq SINE Alu 1 301 -12 3938 164 55 29 chr12 118066885 118067313 -26215176 + MER54A LTR ERVL 78 493 -408 2157 138 0 3 chr12 118067313 118067611 -26214878 + AluSx SINE Alu 1 297 -15 2238 74 0 18 chr12 118067611 118067895 -26214594 + AluY SINE Alu 24 302 -9 2472 88 3 0 chr12 118067895 118068200 -26214289 + AluSp SINE Alu 1 306 -7 3938 164 55 29 chr12 118068200 118068572 -26213917 + MER54A LTR ERVL 492 901 0 1412 176 42 70 chr12 118068617 118068930 -26213559 - AluJo SINE Alu -8 304 1 2284 114 0 0 chr12 118069368 118069658 -26212831 - AluSx SINE Alu -22 290 1 631 250 87 0 chr12 118069748 118069932 -26212557 + MIR SINE MIR 57 256 -6 257 229 156 42 chr12 118070024 118070051 -26212438 - L2 LINE L2 -1 3312 3289 1932 114 39 25 chr12 118070051 118070331 -26212158 + AluSx SINE Alu 1 284 -28 233 70 47 0 chr12 118070331 118070374 -26212115 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 257 229 156 42 chr12 118070374 118070441 -26212048 - L2 LINE L2 -23 3290 3206 401 363 26 11 chr12 118070451 118070641 -26211848 + MIR SINE MIR 21 213 -49 343 222 0 50 chr12 118070812 118070911 -26211578 - MIR3 SINE MIR -37 171 78 2205 133 10 0 chr12 118070961 118071269 -26211220 - AluSx SINE Alu -1 311 1 2235 112 3 3 chr12 118071616 118071921 -26210568 - AluSx SINE Alu -7 305 1 423 281 83 0 chr12 118071932 118072053 -26210436 - MIR SINE MIR -107 155 25 1044 162 0 0 chr12 118072053 118072207 -26210282 - AluJb SINE Alu -26 286 133 270 56 0 0 chr12 118072207 118072243 -26210246 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 2188 119 0 0 chr12 118072244 118072530 -26209959 - AluSx SINE Alu -26 286 1 253 288 12 0 chr12 118072550 118072630 -26209859 + GA-rich Low_complexity Low_complexity 3 83 0 2316 89 3 3 chr12 118072769 118073062 -26209427 + AluSc SINE Alu 1 293 -16 328 270 207 0 chr12 118073090 118073201 -26209288 - MER5B DNA MER1_type 0 178 45 1314 152 18 5 chr12 118073210 118073427 -26209062 - AluJo SINE Alu -12 300 81 211 162 0 0 chr12 118073428 118073465 -26209024 - MER5B DNA MER1_type -141 37 1 27 29 0 0 chr12 118073876 118073910 -26208579 + GC_rich Low_complexity Low_complexity 1 34 0 258 240 133 38 chr12 118074367 118074472 -26208017 + MIR SINE MIR 33 148 -60 223 263 0 105 chr12 118074584 118074679 -26207810 + MIR SINE MIR 21 105 -157 2836 144 39 53 chr12 118074775 118075339 -26207150 + LTR6A LTR ERV1 9 564 0 1916 124 45 0 chr12 118075581 118075872 -26206617 - AluJb SINE Alu -8 304 1 2039 106 0 7 chr12 118075880 118076177 -26206312 - AluSg SINE Alu 0 303 9 398 217 28 105 chr12 118076217 118076360 -26206129 - MER5B DNA MER1_type -45 133 2 284 306 194 35 chr12 118076981 118077151 -26205338 + MIR SINE MIR 8 204 -58 801 131 16 0 chr12 118079289 118079411 -26203078 - FLAM_A SINE Alu -9 124 1 1961 138 7 3 chr12 118080302 118080599 -26201890 - AluJo SINE Alu -14 298 1 198 236 57 104 chr12 118081610 118081716 -26200773 - L2 LINE L2 -8 3264 3164 865 219 105 0 chr12 118082450 118082678 -26199811 + L1MA9 LINE L1 5987 6238 -74 2231 103 0 42 chr12 118082949 118083094 -26199395 + AluSx SINE Alu 1 128 -184 2115 130 7 3 chr12 118083094 118083401 -26199088 + AluSq SINE Alu 1 308 -5 2231 103 0 42 chr12 118083401 118083565 -26198924 + AluSx SINE Alu 128 297 -15 1621 165 83 0 chr12 118083743 118084009 -26198480 - AluJb SINE Alu -24 288 1 247 295 84 0 chr12 118084028 118084123 -26198366 - L1MC/D LINE L1 -2011 5797 5695 1766 179 11 3 chr12 118084741 118085026 -26197463 + AluJb SINE Alu 1 287 -25 1147 148 46 65 chr12 118085351 118085513 -26196976 - AluJo SINE Alu -17 295 136 2287 91 0 42 chr12 118085513 118085820 -26196669 - AluSx SINE Alu -18 294 1 1147 148 46 65 chr12 118085820 118085874 -26196615 - AluJo SINE Alu -176 136 83 734 217 122 122 chr12 118085877 118086195 -26196294 + MER87 LTR ERV1 68 388 -153 2332 80 0 3 chr12 118086195 118086482 -26196007 - AluSc SINE Alu -23 286 1 734 217 122 122 chr12 118086482 118086637 -26195852 + MER87 LTR ERV1 387 541 0 315 218 196 60 chr12 118086637 118086770 -26195719 + MIR SINE MIR 102 252 -10 444 299 0 0 chr12 118086840 118086957 -26195532 + MIR SINE MIR 56 172 -90 503 255 141 16 chr12 118087505 118087697 -26194792 + MIR SINE MIR 47 262 0 2066 135 0 23 chr12 118087795 118088098 -26194391 - AluSx SINE Alu -16 296 1 312 230 81 0 chr12 118088179 118088266 -26194223 + MIR SINE MIR 60 153 -55 2803 121 20 67 chr12 118088266 118088507 -26193982 + L1MA4A LINE L1 5737 5988 -315 2158 124 3 0 chr12 118088507 118088798 -26193691 + AluSx SINE Alu 3 294 -18 2803 121 20 67 chr12 118088798 118088973 -26193516 + L1MA4A LINE L1 5988 6119 -184 1901 153 0 29 chr12 118088973 118089144 -26193345 - AluSx SINE Alu -8 304 145 2166 129 0 7 chr12 118089144 118089453 -26193036 - AluSx SINE Alu -3 309 3 1901 153 0 29 chr12 118089453 118089594 -26192895 - AluSx SINE Alu -167 145 1 2803 121 20 67 chr12 118089594 118089770 -26192719 + L1MA4A LINE L1 6119 6302 -1 673 127 0 0 chr12 118089776 118089886 -26192603 + L1PB3 LINE L1 6041 6150 -4 41 0 0 0 chr12 118089886 118089927 -26192562 + AT_rich Low_complexity Low_complexity 1 41 0 194 239 22 0 chr12 118089935 118089981 -26192508 + MIR3 SINE MIR 152 198 -10 2381 77 3 10 chr12 118089988 118090285 -26192204 - AluSp SINE Alu -18 295 1 261 320 245 34 chr12 118090502 118090586 -26191903 - L2 LINE L2 -6 3307 3242 189 0 0 0 chr12 118090586 118090607 -26191882 + (TC)n Simple_repeat Simple_repeat 2 22 0 2377 87 0 13 chr12 118090607 118090907 -26191582 - AluSx SINE Alu -16 296 1 261 320 245 34 chr12 118090907 118091209 -26191280 - L2 LINE L2 -70 3243 2838 202 237 65 32 chr12 118092036 118092129 -26190360 + MIR SINE MIR 43 138 -70 200 300 0 33 chr12 118092797 118092887 -26189602 + G-rich Low_complexity Low_complexity 1 87 0 206 188 12 153 chr12 118092933 118093018 -26189471 + MIR SINE MIR 110 182 -80 532 307 79 9 chr12 118093125 118093340 -26189149 - MIR SINE MIR -13 249 20 782 161 0 0 chr12 118093340 118093504 -26188985 - FLAM_C SINE Alu 0 165 2 545 119 37 75 chr12 118093540 118093601 -26188888 - L1MB8 LINE L1 -9 6169 6107 2185 102 19 32 chr12 118093601 118093914 -26188575 - AluSg SINE Alu -1 309 1 545 119 37 75 chr12 118093914 118093986 -26188503 - L1MB8 LINE L1 -71 6107 6041 720 221 0 0 chr12 118093989 118094129 -26188360 + FRAM SINE Alu 1 137 -39 2548 160 54 40 chr12 118094129 118094546 -26187943 - L1MB7 LINE L1 -146 6038 5610 2127 132 0 23 chr12 118094546 118094850 -26187639 - AluSx SINE Alu -14 298 2 2548 160 54 40 chr12 118094850 118094989 -26187500 - L1MB7 LINE L1 -574 5610 5474 917 211 0 0 chr12 118094996 118095162 -26187327 - AluJb SINE Alu -10 302 137 237 257 236 36 chr12 118095191 118095331 -26187158 + MIR SINE MIR 30 197 -65 322 257 0 0 chr12 118095425 118095495 -26186994 + L2 LINE L2 3185 3254 -18 1839 162 9 32 chr12 118095672 118095987 -26186502 + AluJo SINE Alu 1 308 -4 530 152 16 56 chr12 118095998 118096123 -26186366 - L1MB2 LINE L1 -79 6092 5973 2258 92 17 3 chr12 118096127 118096419 -26186070 - AluSq SINE Alu -17 296 1 354 219 151 78 chr12 118096423 118096642 -26185847 - MIR SINE MIR -6 256 22 233 209 16 163 chr12 118096641 118096770 -26185719 + MIR3 SINE MIR 78 187 -21 * 180 0 0 0 chr12 118096933 118096953 -26185536 + (CCCCAG)n Simple_repeat Simple_repeat 2 21 0 206 203 76 13 chr12 118097103 118097177 -26185312 + MIR SINE MIR 92 169 -63 2336 94 3 3 chr12 118097480 118097778 -26184711 + AluSx SINE Alu 1 298 -14 285 276 39 55 chr12 118097807 118097934 -26184555 - MIR SINE MIR -78 184 60 185 191 0 24 chr12 118097965 118098007 -26184482 + L3 LINE CR1 1424 1464 -113 1580 186 33 13 chr12 118098082 118098383 -26184106 + AluJb SINE Alu 6 312 0 1844 172 3 10 chr12 118098396 118098699 -26183790 + AluJb SINE Alu 1 301 -11 186 107 0 0 chr12 118099017 118099045 -26183444 - MIR SINE MIR -118 144 117 252 215 47 28 chr12 118099141 118099248 -26183241 + (CGGG)n Simple_repeat Simple_repeat 4 112 0 231 254 32 0 chr12 118099463 118099526 -26182963 + MIR SINE MIR 81 145 -63 188 65 0 32 chr12 118099837 118099868 -26182621 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 190 286 0 0 chr12 118099967 118100009 -26182480 - MIR3 SINE MIR -53 155 114 195 271 42 25 chr12 118100456 118100574 -26181915 + MIR SINE MIR 64 183 -79 186 210 48 81 chr12 118101218 118101280 -26181209 + L2 LINE L2 3210 3269 -3 199 298 97 9 chr12 118101583 118101697 -26180792 - L2 LINE L2 -586 2728 2605 240 186 0 0 chr12 118101764 118101807 -26180682 + L2 LINE L2 3264 3306 -7 450 308 154 5 chr12 118102223 118102437 -26180052 - MIR SINE MIR -1 261 16 1822 158 35 0 chr12 118102532 118102816 -26179673 + AluJo SINE Alu 1 294 -18 224 308 13 0 chr12 118102868 118102946 -26179543 + MIR SINE MIR 63 141 -67 393 257 200 0 chr12 118103249 118103389 -26179100 + MIR SINE MIR 12 179 -83 1609 151 65 18 chr12 118103452 118103730 -26178759 - AluJo SINE Alu -6 306 16 461 250 20 0 chr12 118103800 118103900 -26178589 - MIR SINE MIR -62 146 45 242 302 21 10 chr12 118103983 118104079 -26178410 + MIR SINE MIR 30 126 -136 289 277 59 10 chr12 118104297 118104398 -26178091 + MIR3 SINE MIR 54 159 -49 249 128 0 0 chr12 118104691 118104776 -26177713 + (TG)n Simple_repeat Simple_repeat 1 85 0 309 250 23 20 chr12 118104776 118104916 -26177573 + L1MC4 LINE L1 1995 6986 -1336 669 192 6 12 chr12 118104923 118105095 -26177394 + (TG)n Simple_repeat Simple_repeat 2 172 0 284 285 70 58 chr12 118105269 118105438 -26177051 + MIR3 SINE MIR 7 177 -63 200 167 24 24 chr12 118105461 118105503 -26176986 + L2 LINE L2 3231 3272 0 231 36 0 0 chr12 118105600 118105628 -26176861 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 311 293 47 0 chr12 118105629 118105735 -26176754 - L2 LINE L2 -14 3299 3189 496 280 0 8 chr12 118105808 118105926 -26176563 - MIR SINE MIR -100 162 46 293 301 210 17 chr12 118106053 118106229 -26176260 + MIR SINE MIR 51 260 -2 1772 169 14 14 chr12 118106324 118106620 -26175869 + AluJb SINE Alu 1 296 -16 202 71 0 0 chr12 118107209 118107237 -26175252 + MIR SINE MIR 126 153 -109 1027 103 0 7 chr12 118107321 118107457 -26175032 + AluJo SINE Alu 1 135 -177 33 0 0 0 chr12 118107457 118107490 -26174999 + AT_rich Low_complexity Low_complexity 1 33 0 1947 117 10 27 chr12 118107866 118108164 -26174325 - AluJb SINE Alu -11 301 9 2026 114 10 17 chr12 118108203 118108493 -26173996 + AluSx SINE Alu 1 288 -24 2384 92 3 0 chr12 118108546 118108840 -26173649 - AluSg SINE Alu -15 295 1 757 241 45 27 chr12 118109117 118109337 -26173152 - MIR SINE MIR -19 243 20 2496 74 0 3 chr12 118110100 118110398 -26172091 + AluSq SINE Alu 1 297 -16 1869 113 12 0 chr12 118110398 118110654 -26171835 + AluSq SINE Alu 49 307 -6 180 0 0 0 chr12 118110876 118110896 -26171593 + (TTG)n Simple_repeat Simple_repeat 2 21 0 928 125 0 15 chr12 118111435 118111571 -26170918 - AluJo SINE Alu -178 134 1 2374 109 3 0 chr12 118111648 118111960 -26170529 + AluSq SINE Alu 1 313 0 2401 58 3 0 chr12 118111977 118112286 -26170203 + L1PA8 LINE L1 5805 6114 -58 247 222 61 147 chr12 118112342 118112540 -26169949 + Charlie8 DNA MER1_type 195 375 -2042 203 346 0 65 chr12 118112540 118112647 -26169842 - L2 LINE L2 -100 3172 3073 2435 73 10 3 chr12 118113021 118113322 -26169167 - AluSg SINE Alu -7 303 1 21 0 0 0 chr12 118113322 118113343 -26169146 + AT_rich Low_complexity Low_complexity 1 21 0 712 176 8 0 chr12 118113720 118113845 -26168644 - FLAM_A SINE Alu -3 130 5 1532 177 7 70 chr12 118114016 118114150 -26168339 + AluJb SINE Alu 1 107 -205 2279 94 17 10 chr12 118114150 118114449 -26168040 + AluSq SINE Alu 1 301 -12 1532 177 7 70 chr12 118114449 118114613 -26167876 + AluJb SINE Alu 107 280 -32 1218 209 55 17 chr12 118114799 118115091 -26167398 - MER82 DNA MER2_type 0 653 351 402 153 141 24 chr12 118115100 118115185 -26167304 + AluJb SINE Alu 192 286 -26 2405 88 0 10 chr12 118115195 118115491 -26166998 + AluSg SINE Alu 1 293 -17 1349 169 0 5 chr12 118115498 118115711 -26166778 + AluJo SINE Alu 89 300 -12 1456 123 14 0 chr12 118115716 118115935 -26166554 - MER82 DNA MER2_type -299 354 133 2461 70 0 10 chr12 118115999 118116298 -26166191 + AluY SINE Alu 1 296 -15 2420 109 0 0 chr12 118116553 118116866 -26165623 + AluSq SINE Alu 1 313 0 2420 55 3 0 chr12 118116882 118117191 -26165298 + L1PA8 LINE L1 5805 6114 -58 247 222 61 147 chr12 118117247 118117445 -26165044 + Charlie8 DNA MER1_type 195 375 -2042 203 346 0 65 chr12 118117445 118117552 -26164937 - L2 LINE L2 -100 3172 3073 2404 80 10 3 chr12 118117922 118118224 -26164265 - AluSg SINE Alu -6 304 1 22 0 0 0 chr12 118118224 118118246 -26164243 + AT_rich Low_complexity Low_complexity 1 22 0 343 310 0 0 chr12 118118478 118118565 -26163924 - MIR SINE MIR 0 262 176 2263 123 3 0 chr12 118118800 118119102 -26163387 + AluSx SINE Alu 1 303 -9 195 42 0 0 chr12 118121734 118121758 -26160731 + (GGA)n Simple_repeat Simple_repeat 3 26 0 792 151 0 0 chr12 118123624 118123750 -26158739 + FLAM_A SINE Alu 2 127 -6 1716 183 35 3 chr12 118124571 118124855 -26157634 - AluJb SINE Alu -19 293 1 2234 111 3 10 chr12 118124859 118125166 -26157323 - AluSp SINE Alu -8 305 1 2260 86 7 7 chr12 118125555 118125845 -26156644 + AluSc SINE Alu 1 290 -19 348 311 112 1 chr12 118126337 118126508 -26155981 - L1ME LINE L1 -344 5818 5632 293 337 163 0 chr12 118126977 118127155 -26155334 + L2 LINE L2 2174 2380 -934 262 276 82 15 chr12 118127344 118127478 -26155011 + L2 LINE L2 2664 2806 -508 1207 122 6 0 chr12 118127824 118127988 -26154501 + AluSp SINE Alu 137 301 -12 180 268 14 28 chr12 118128519 118128590 -26153899 + MIR SINE MIR 23 92 -170 1087 117 0 0 chr12 118128667 118128804 -26153685 + AluSq/x SINE Alu 1 137 -175 2391 75 3 3 chr12 118128805 118129097 -26153392 + AluSp SINE Alu 1 292 -21 251 349 28 0 chr12 118129907 118130013 -26152476 + MIR SINE MIR 117 225 -37 2043 118 36 0 chr12 118130259 118130539 -26151950 + AluSx SINE Alu 1 290 -22 2232 120 13 0 chr12 118130558 118130866 -26151623 + AluSq SINE Alu 1 312 -1 2204 92 0 0 chr12 118131930 118132223 -26150266 - AluSx SINE Alu -19 293 1 7384 113 54 49 chr12 118132236 118133382 -26149107 + MER52C LTR ERV1 1 1156 -122 2407 81 0 0 chr12 118133382 118133690 -26148799 + AluSg SINE Alu 1 308 -2 7384 113 54 49 chr12 118133690 118133814 -26148675 + MER52C LTR ERV1 1156 1278 0 384 217 39 85 chr12 118133932 118134021 -26148468 + MIR SINE MIR 126 209 -53 1855 108 70 18 chr12 118134021 118134307 -26148182 + AluSg SINE Alu 1 301 -9 384 217 39 85 chr12 118134307 118134346 -26148143 + MIR SINE MIR 209 248 -14 309 169 99 0 chr12 118134471 118134542 -26147947 + MER5A DNA MER1_type 51 128 -61 1951 116 14 3 chr12 118135013 118135305 -26147184 + AluSx SINE Alu 1 295 -17 1923 92 3 54 chr12 118135388 118135716 -26146773 + AluSp SINE Alu 3 315 0 740 229 32 55 chr12 118137521 118137774 -26144715 + MER102a DNA MER1_type 50 296 -34 180 77 0 0 chr12 118139683 118139709 -26142780 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2145 83 4 0 chr12 118139716 118139992 -26142497 - AluSp SINE Alu -36 277 1 873 198 22 16 chr12 118140589 118140771 -26141718 - AluJo SINE Alu -129 183 1 2188 100 3 7 chr12 118141750 118142049 -26140440 + AluSx SINE Alu 1 298 -14 1992 126 7 0 chr12 118142874 118143167 -26139322 - AluSq SINE Alu -18 295 1 201 254 0 17 chr12 118143334 118143393 -26139096 + A-rich Low_complexity Low_complexity 4 61 0 1372 159 112 18 chr12 118144733 118144838 -26137651 + AluJo SINE Alu 1 95 -217 464 0 0 18 chr12 118144838 118144895 -26137594 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 1372 159 112 18 chr12 118144895 118145066 -26137423 + AluJo SINE Alu 95 303 -9 311 344 104 0 chr12 118145077 118145231 -26137258 - MIR3 SINE MIR -3 205 36 359 269 118 43 chr12 118145259 118145445 -26137044 + MARNA DNA Mariner 332 531 -55 1659 177 3 0 chr12 118145762 118146094 -26136395 + AluSx SINE Alu 1 333 0 1958 134 13 0 chr12 118146687 118146985 -26135504 - AluSq SINE Alu -11 302 1 1990 129 7 3 chr12 118146987 118147289 -26135200 - AluJb SINE Alu -9 303 1 1738 156 3 23 chr12 118147491 118147798 -26134691 - AluSx SINE Alu -11 301 1 1408 188 10 27 chr12 118148501 118148799 -26133690 - AluSx SINE Alu -19 293 1 1692 140 41 51 chr12 118148830 118149145 -26133344 - AluJb SINE Alu 0 312 1 1056 166 18 0 chr12 118149194 118149363 -26133126 + FAM SINE Alu 4 175 0 1970 129 3 0 chr12 118151022 118151309 -26131180 + AluSx SINE Alu 5 292 -20 259 192 0 0 chr12 118155818 118155870 -26126619 - L2 LINE L2 -18 3295 3244 192 97 0 0 chr12 118156786 118156817 -26125672 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 569 258 186 8 chr12 118156837 118157101 -26125388 - L2 LINE L2 -44 3269 2959 203 205 0 0 chr12 118158003 118158042 -26124447 + L2 LINE L2 3233 3271 -1 1516 181 3 26 chr12 118158517 118158821 -26123668 + AluJo SINE Alu 15 311 -1 2324 58 34 0 chr12 118159192 118159486 -26123003 + AluY SINE Alu 1 304 -7 1936 129 7 0 chr12 118159782 118160062 -26122427 + AluSx SINE Alu 1 282 -30 1687 115 105 7 chr12 118160162 118160448 -26122041 + MSTB1 LTR MaLR 119 432 0 2164 61 0 0 chr12 118160482 118160745 -26121744 - AluY SINE Alu -15 296 34 257 253 25 13 chr12 118160826 118160905 -26121584 - L1ME LINE L1 -449 5672 5593 2268 95 0 0 chr12 118160922 118161216 -26121273 - AluY SINE Alu -17 294 1 2061 112 3 10 chr12 118161221 118161516 -26120973 - AluSx SINE Alu -19 293 1 2320 90 0 0 chr12 118162030 118162340 -26120149 - AluSx SINE Alu -2 310 1 864 139 7 0 chr12 118162564 118162701 -26119788 + L1PA8A LINE L1 5994 6131 0 1550 106 173 12 chr12 118163314 118163568 -26118921 + AluSg SINE Alu 1 295 -5 508 295 109 55 chr12 118163585 118164128 -26118361 - L1MC/D LINE L1 -341 5780 5266 1996 144 0 0 chr12 118165043 118165349 -26117140 + AluJb SINE Alu 1 306 -6 187 380 46 60 chr12 118165556 118165772 -26116717 + L2 LINE L2 3040 3252 -20 900 176 0 24 chr12 118165828 118165998 -26116491 + FRAM SINE Alu 1 166 -10 620 228 136 5 chr12 118166374 118166558 -26115931 - MIR SINE MIR -1 261 54 249 243 0 0 chr12 118166638 118166708 -26115781 + GA-rich Low_complexity Low_complexity 4 73 0 190 234 43 64 chr12 118166866 118166960 -26115529 - MIR SINE MIR -168 94 3 21 0 0 0 chr12 118167090 118167111 -26115378 + AT_rich Low_complexity Low_complexity 1 21 0 504 0 0 0 chr12 118167639 118167695 -26114794 + (CA)n Simple_repeat Simple_repeat 2 57 0 477 125 0 0 chr12 118168937 118169009 -26113480 + AluS SINE Alu 2 73 -237 983 97 0 0 chr12 118169010 118169144 -26113345 - AluSg/x SINE Alu -8 304 171 431 174 0 0 chr12 118169247 118169316 -26113173 + FLAM SINE Alu 51 119 -24 261 57 0 0 chr12 118169316 118169351 -26113138 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1284 222 43 0 chr12 118169521 118169810 -26112679 + MER58B DNA MER1_type 42 341 0 1287 219 121 30 chr12 118170681 118171079 -26111410 - L1ME LINE L1 -452 6108 5675 2157 98 0 3 chr12 118171097 118171392 -26111097 - AluSp SINE Alu -19 294 1 1761 144 0 17 chr12 118171394 118171693 -26110796 - AluSx SINE Alu -18 294 1 669 194 9 57 chr12 118171693 118171826 -26110663 - L1ME LINE L1 -856 5684 5563 2128 119 7 3 chr12 118171826 118172136 -26110353 - AluSp SINE Alu -2 311 1 669 194 9 57 chr12 118172136 118172213 -26110276 - L1ME LINE L1 -977 5563 5484 863 173 7 7 chr12 118172234 118172384 -26110105 - FRAM SINE Alu -30 146 1 657 156 0 0 chr12 118172415 118172524 -26109965 - AluSg/x SINE Alu -2 308 200 1448 173 20 4 chr12 118172624 118172873 -26109616 - AluJb SINE Alu -59 253 1 667 194 118 46 chr12 118172873 118173110 -26109379 - L1ME LINE L1 -1489 5051 4798 2000 115 7 3 chr12 118173116 118173411 -26109078 - AluSx SINE Alu -16 296 1 253 228 53 0 chr12 118173411 118173468 -26109021 - L1ME LINE L1 -2300 4240 4181 1674 173 7 23 chr12 118173470 118173776 -26108713 - AluJo SINE Alu -11 301 1 219 69 0 0 chr12 118173778 118173807 -26108682 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2038 117 0 0 chr12 118173807 118174089 -26108400 - AluSx SINE Alu -30 282 1 4038 209 46 86 chr12 118174151 118174408 -26108081 - L1MDa LINE L1 -2878 3662 3396 1993 128 0 0 chr12 118174408 118174696 -26107793 + AluSx SINE Alu 1 288 -24 4038 209 46 86 chr12 118174696 118174893 -26107596 - L1MDa LINE L1 -3144 3396 3193 2103 107 3 0 chr12 118174893 118175183 -26107306 + AluSx SINE Alu 1 291 -21 4038 209 46 86 chr12 118175183 118175853 -26106636 - L1MDa LINE L1 -3347 3193 2498 1407 184 10 42 chr12 118175853 118176162 -26106327 - AluJo SINE Alu -13 299 1 4038 209 46 86 chr12 118176162 118176420 -26106069 - L1MDa LINE L1 -4042 2498 2231 2144 101 7 3 chr12 118176420 118176716 -26105773 - AluSc SINE Alu -12 297 1 4038 209 46 86 chr12 118176716 118176754 -26105735 - L1MDa LINE L1 -4309 2231 2193 264 30 0 0 chr12 118176754 118176787 -26105702 + (CA)n Simple_repeat Simple_repeat 2 34 0 4038 209 46 86 chr12 118176787 118176932 -26105557 - L1MDa LINE L1 -4347 2193 2044 2483 53 0 0 chr12 118176932 118177231 -26105258 - AluY SINE Alu -11 300 2 2142 112 7 0 chr12 118177232 118177537 -26104952 - AluSx SINE Alu -5 307 1 4038 209 46 86 chr12 118177537 118177892 -26104597 - L1MDa LINE L1 -4496 2044 1676 1736 153 35 0 chr12 118177892 118178180 -26104309 + AluJb SINE Alu 6 303 -9 2064 110 0 0 chr12 118178190 118178481 -26104008 + AluSg SINE Alu 1 291 -19 4038 209 46 86 chr12 118178481 118178726 -26103763 - L1MDa LINE L1 -4873 1667 1414 2152 121 0 0 chr12 118178726 118179031 -26103458 - AluSx SINE Alu -7 305 1 4038 209 46 86 chr12 118179031 118179619 -26102870 - L1MDa LINE L1 -5126 1414 1002 2233 84 10 3 chr12 118179921 118180220 -26102269 - AluY SINE Alu -9 302 2 259 325 26 9 chr12 118180355 118180469 -26102020 - L1MDa LINE L1 -5949 581 466 862 171 17 51 chr12 118180546 118180721 -26101768 - MER58A DNA MER1_type 0 224 56 1324 166 41 51 chr12 118180721 118181016 -26101473 - AluJo SINE Alu -19 293 2 279 0 54 0 chr12 118181022 118181059 -26101430 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 357 143 0 0 chr12 118181059 118181108 -26101381 - Alu SINE Alu -19 283 235 332 286 0 0 chr12 118181108 118181178 -26101311 - MER58A DNA MER1_type -37 70 1 272 280 25 62 chr12 118182033 118182201 -26100288 - MER5A DNA MER1_type -30 148 2 465 83 0 0 chr12 118182477 118182537 -26099952 - MADE1 DNA Mariner -20 60 1 356 245 0 43 chr12 118182605 118182699 -26099790 + MER104 DNA Tc2 11 100 -80 211 376 35 0 chr12 118182830 118183003 -26099486 + L2 LINE L2 2842 3020 -252 25 31 0 0 chr12 118183319 118183351 -26099138 + AT_rich Low_complexity Low_complexity 1 32 0 2111 130 3 19 chr12 118183361 118183668 -26098821 - AluSx SINE Alu -10 302 1 211 261 80 57 chr12 118184607 118184695 -26097794 - MIR SINE MIR -119 143 54 239 246 70 0 chr12 118184826 118184883 -26097606 + AluSp SINE Alu 108 168 -135 1463 139 9 5 chr12 118185139 118185362 -26097127 + AluJb SINE Alu 86 309 -3 2299 90 20 0 chr12 118185366 118185665 -26096824 + AluSx SINE Alu 1 305 -7 228 265 98 10 chr12 118186868 118186970 -26095519 + MER113 DNA MER1_type? 1 111 -410 2392 77 7 7 chr12 118187821 118188119 -26094370 + AluSx SINE Alu 1 298 -14 2485 95 0 0 chr12 118188934 118189240 -26093249 - AluSx SINE Alu -6 306 1 2186 99 3 3 chr12 118189458 118189765 -26092724 - AluSx SINE Alu 0 307 1 330 242 233 23 chr12 118190242 118190457 -26092032 + MIR SINE MIR 2 261 -1 198 0 0 0 chr12 118190869 118190891 -26091598 + (A)n Simple_repeat Simple_repeat 1 22 0 224 248 107 40 chr12 118192244 118192393 -26090096 - MIR SINE MIR -69 193 35 207 222 37 0 chr12 118192732 118192786 -26089703 + G-rich Low_complexity Low_complexity 3 58 0 482 270 66 7 chr12 118193430 118193582 -26088907 - L2 LINE L2 0 3313 3153 2114 94 11 11 chr12 118193589 118193723 -26088766 + AluSx SINE Alu 1 134 -178 2503 63 17 0 chr12 118193723 118194023 -26088466 + AluSg SINE Alu 1 305 -5 2114 94 11 11 chr12 118194023 118194175 -26088314 + AluSx SINE Alu 133 287 -25 395 255 0 20 chr12 118194281 118194379 -26088110 + MER58C DNA MER1_type 34 129 -86 239 333 103 0 chr12 118194742 118194859 -26087630 - L2 LINE L2 -5 3308 3180 746 165 149 26 chr12 118195537 118195731 -26086758 + MER20 DNA MER1_type 2 219 0 22 35 0 0 chr12 118196259 118196288 -26086201 + GC_rich Low_complexity Low_complexity 1 29 0 503 309 87 0 chr12 118196717 118196947 -26085542 - MIR SINE MIR 0 262 13 332 220 23 0 chr12 118197018 118197111 -26085378 + MIR SINE MIR 53 153 -55 230 267 86 29 chr12 118197121 118197226 -26085263 + MER5A DNA MER1_type 77 187 -2 987 167 31 45 chr12 118197309 118197531 -26084958 + MER20 DNA MER1_type 1 219 0 2542 77 3 0 chr12 118197538 118197850 -26084639 - AluSp SINE Alu 0 313 1 1867 129 70 0 chr12 118198226 118198513 -26083976 - AluSx SINE Alu -5 307 1 677 117 0 0 chr12 118198774 118198868 -26083621 - AluJ/FLAM SINE Alu -213 99 6 2268 96 3 10 chr12 118199130 118199433 -26083056 + AluSx SINE Alu 3 303 -9 476 161 0 23 chr12 118200575 118200662 -26081827 + FLAM_A SINE Alu 41 125 -17 2138 129 0 3 chr12 118200670 118200965 -26081524 + AluSg SINE Alu 1 294 -16 2291 68 3 52 chr12 118201127 118201435 -26081054 + AluSp SINE Alu 1 293 -20 296 245 113 38 chr12 118201589 118201748 -26080741 - MIR SINE MIR -1 261 91 4693 132 34 67 chr12 118201801 118201933 -26080556 - L1MB7 LINE L1 0 6184 6049 1476 181 84 11 chr12 118201933 118202220 -26080269 - AluJo SINE Alu 0 312 5 4693 132 34 67 chr12 118202220 118202618 -26079871 - L1MB7 LINE L1 -135 6049 5640 2269 103 10 0 chr12 118202618 118202910 -26079579 - AluSx SINE Alu -17 295 1 4693 132 34 67 chr12 118202910 118203396 -26079093 - L1MB7 LINE L1 -544 5640 5201 2333 96 3 0 chr12 118203396 118203689 -26078800 - AluSp SINE Alu -19 294 1 6688 229 48 40 chr12 118203691 118204157 -26078332 - L1MB7 LINE L1 -1191 4955 4494 2372 89 3 16 chr12 118204157 118204473 -26078016 - AluSp SINE Alu -1 312 1 6688 229 48 40 chr12 118204473 118205398 -26077091 - L1MB7 LINE L1 -1652 4494 3578 2118 132 0 0 chr12 118205398 118205687 -26076802 + AluSx SINE Alu 3 291 -21 6688 229 48 40 chr12 118205687 118205883 -26076606 - L1MB7 LINE L1 -2568 3578 3385 2441 88 3 0 chr12 118205883 118206189 -26076300 - AluSp SINE Alu -6 307 1 6688 229 48 40 chr12 118206189 118206411 -26076078 - L1MB7 LINE L1 -2761 3385 3130 2263 91 0 7 chr12 118206659 118206975 -26075514 - AluSx SINE Alu 0 314 1 1055 177 0 0 chr12 118207767 118207931 -26074558 + AluJb SINE Alu 137 300 -12 1272 166 0 10 chr12 118208977 118209182 -26073307 + AluJb SINE Alu 88 290 -22 1546 140 24 82 chr12 118210299 118210591 -26071898 + AluJo SINE Alu 1 275 -37 193 73 24 24 chr12 118210594 118210635 -26071854 + (TAA)n Simple_repeat Simple_repeat 2 42 0 2539 75 0 0 chr12 118210939 118211245 -26071244 + AluY SINE Alu 1 306 -5 2388 44 41 17 chr12 118211589 118211884 -26070605 - AluY SINE Alu -9 302 1 2050 117 17 13 chr12 118212360 118212659 -26069830 - AluSx SINE Alu -12 300 1 1953 141 13 0 chr12 118212751 118213056 -26069433 - AluJb SINE Alu -3 309 1 210 167 0 0 chr12 118213067 118213103 -26069386 + T-rich Low_complexity Low_complexity 1 36 0 2234 137 0 3 chr12 118213569 118213882 -26068607 - AluSx SINE Alu 0 312 1 1022 118 0 0 chr12 118213882 118214018 -26068471 - AluSq/x SINE Alu -177 136 1 2396 75 7 0 chr12 118214460 118214754 -26067735 + AluSx SINE Alu 1 296 -16 261 0 0 0 chr12 118216578 118216607 -26065882 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 267 278 19 56 chr12 118217602 118217710 -26064779 + MIR3 SINE MIR 70 173 -35 2310 113 3 0 chr12 118218223 118218533 -26063956 - AluSx SINE Alu -1 311 1 2416 87 0 0 chr12 118218976 118219274 -26063215 + AluY SINE Alu 1 298 -13 22 0 0 0 chr12 118221209 118221231 -26061258 + AT_rich Low_complexity Low_complexity 1 22 0 2350 103 0 0 chr12 118221882 118222184 -26060305 + AluSx SINE Alu 1 302 -10 2384 80 0 10 chr12 118222773 118223073 -26059416 - AluSx SINE Alu -15 297 1 2238 106 3 13 chr12 118223100 118223402 -26059087 + AluSp SINE Alu 1 299 -14 2301 121 0 0 chr12 118223408 118223714 -26058775 + AluSx SINE Alu 1 306 -6 536 251 38 43 chr12 118223937 118224148 -26058341 + MIR SINE MIR 43 252 -10 295 242 208 17 chr12 118224173 118224293 -26058196 - MIR SINE MIR -112 150 8 2415 73 0 0 chr12 118225555 118225844 -26056645 - AluSg SINE Alu -21 289 1 27 0 0 0 chr12 118225855 118225882 -26056607 + AT_rich Low_complexity Low_complexity 1 27 0 332 253 199 75 chr12 118226918 118226974 -26055515 + MIR SINE MIR 54 102 -160 2391 106 0 0 chr12 118226974 118227275 -26055214 - AluSx SINE Alu -11 301 1 332 253 199 75 chr12 118227275 118227404 -26055085 + MIR SINE MIR 102 262 0 25 75 0 0 chr12 118227568 118227621 -26054868 + AT_rich Low_complexity Low_complexity 1 53 0 2369 72 0 36 chr12 118227621 118227927 -26054562 + AluSp SINE Alu 1 295 -18 686 212 12 36 chr12 118228103 118228166 -26054323 - L1ME1 LINE L1 -5 6161 6098 1895 134 49 0 chr12 118228166 118228450 -26054039 - AluSx SINE Alu -14 298 1 686 212 12 36 chr12 118228450 118228551 -26053938 - L1ME1 LINE L1 -68 6098 6001 1627 203 23 113 chr12 118228555 118229166 -26053323 - L1M4 LINE L1 -1737 4409 3854 863 277 86 29 chr12 118229282 118229701 -26052788 + L1ME3A LINE L1 5504 5946 -224 2573 50 6 28 chr12 118229852 118230169 -26052320 - AluY SINE Alu 0 311 2 21 36 0 0 chr12 118230252 118230280 -26052209 + AT_rich Low_complexity Low_complexity 1 28 0 815 175 36 0 chr12 118231271 118231408 -26051081 - FAM SINE Alu -42 143 2 329 214 153 0 chr12 118231631 118231729 -26050760 - L2 LINE L2 0 3272 3160 1658 185 3 26 chr12 118232131 118232254 -26050235 + AluJo SINE Alu 1 125 -187 2110 145 0 0 chr12 118232254 118232558 -26049931 - AluSx SINE Alu -8 304 1 1658 185 3 26 chr12 118232558 118232737 -26049752 + AluJo SINE Alu 125 296 -16 2432 58 7 10 chr12 118233276 118233570 -26048919 + AluY SINE Alu 1 293 -18 398 313 180 18 chr12 118233892 118234109 -26048380 + MIR SINE MIR 8 259 -3 2602 71 0 0 chr12 118236874 118237185 -26045304 - AluSq SINE Alu -2 311 1 2316 95 0 7 chr12 118237591 118237887 -26044602 + AluSq SINE Alu 1 294 -19 621 306 130 32 chr12 118239317 118239584 -26042905 - L2 LINE L2 0 3313 3074 1974 108 38 70 chr12 118239584 118239900 -26042589 + AluSx SINE Alu 1 306 -6 621 306 130 32 chr12 118239900 118240263 -26042226 - L2 LINE L2 -239 3074 2629 2411 100 0 10 chr12 118240380 118240690 -26041799 + AluSg SINE Alu 1 307 -3 207 69 0 0 chr12 118240826 118240855 -26041634 + (A)n Simple_repeat Simple_repeat 1 29 0 2263 96 20 0 chr12 118241073 118241376 -26041113 + AluSg SINE Alu 1 309 -1 2545 84 3 0 chr12 118241500 118241811 -26040678 + AluSp SINE Alu 1 312 -1 2134 106 24 0 chr12 118242119 118242412 -26040077 + AluSc SINE Alu 1 300 -9 2024 152 0 0 chr12 118242485 118242788 -26039701 + AluSx SINE Alu 1 303 -9 2195 108 0 7 chr12 118242954 118243250 -26039239 + AluSc SINE Alu 1 294 -15 496 279 170 25 chr12 118243276 118243559 -26038930 - MER5C DNA MER1_type 0 324 1 587 255 65 51 chr12 118243567 118243783 -26038706 + MER20 DNA MER1_type 1 219 0 218 338 0 0 chr12 118243789 118243860 -26038629 + MIR SINE MIR 180 250 -12 661 299 5 58 chr12 118244114 118244218 -26038271 + MIR SINE MIR 51 138 -124 1582 129 80 59 chr12 118244218 118244505 -26037984 + AluJo SINE Alu 4 296 -16 661 299 5 58 chr12 118244505 118244624 -26037865 + MIR SINE MIR 138 262 0 1215 84 0 0 chr12 118244805 118244948 -26037541 + AluSg/x SINE Alu 77 219 -91 474 243 25 86 chr12 118245709 118245952 -26036537 + L2 LINE L2 3022 3249 -64 1169 34 54 0 chr12 118245960 118246108 -26036381 + LTR2B LTR ERV1 4 159 -331 1215 184 72 92 chr12 118246137 118246582 -26035907 - LTR7 LTR ERV1 -14 436 1 * 2827 31 0 11 chr12 118246582 118246922 -26035567 + LTR2B LTR ERV1 155 490 0 243 314 171 0 chr12 118246965 118247070 -26035419 - MIR SINE MIR -126 136 14 4403 72 2 2 chr12 118247152 118247705 -26034784 + MER41A LTR ERV1 1 553 -1 516 274 181 10 chr12 118248008 118248212 -26034277 + MIR SINE MIR 4 242 -20 2321 103 0 0 chr12 118248242 118248533 -26033956 - AluSg SINE Alu -19 291 1 2334 55 65 14 chr12 118248713 118249004 -26033485 - AluY SINE Alu -5 306 1 2040 130 3 10 chr12 118249004 118249304 -26033185 - AluJo SINE Alu -14 298 1 325 207 183 0 chr12 118249317 118249399 -26033090 - MIR SINE MIR -14 248 152 471 237 31 113 chr12 118249593 118249729 -26032760 - MER5B DNA MER1_type 0 178 32 2053 116 39 0 chr12 118249729 118250013 -26032476 + AluSc SINE Alu 1 295 -14 471 237 31 113 chr12 118250013 118250025 -26032464 - MER5B DNA MER1_type -146 32 21 2163 147 0 0 chr12 118250025 118250324 -26032165 + AluSx SINE Alu 1 299 -13 471 237 31 113 chr12 118250324 118250368 -26032121 - MER5B DNA MER1_type -157 21 1 493 270 70 76 chr12 118250392 118250610 -26031879 + L1ME3A LINE L1 5577 5794 -376 1945 152 30 0 chr12 118250610 118250907 -26031582 + AluJb SINE Alu 1 306 -6 493 270 70 76 chr12 118250907 118251003 -26031486 + L1ME3A LINE L1 5794 5889 -281 2486 154 75 17 chr12 118251044 118251525 -26030964 + L1MB5 LINE L1 5666 6174 0 948 193 6 6 chr12 118251613 118251779 -26030710 - FAM SINE Alu -9 166 1 2242 100 24 0 chr12 118252023 118252314 -26030175 - AluSx SINE Alu -13 299 2 3196 69 33 0 chr12 118252338 118252761 -26029728 - LTR8 LTR ERV1 0 691 255 1056 118 0 0 chr12 118252761 118252897 -26029592 + AluSg/x SINE Alu 163 298 -14 205 310 56 63 chr12 118253043 118253185 -26029304 + MIR3 SINE MIR 68 208 0 779 183 0 8 chr12 118253276 118253407 -26029082 + FLAM_A SINE Alu 4 133 0 1910 88 179 38 chr12 118253470 118253789 -26028700 + THE1B LTR MaLR 1 364 0 460 219 84 0 chr12 118254440 118254559 -26027930 - MLT1D LTR MaLR 0 505 377 409 315 35 65 chr12 118254563 118254590 -26027899 - L1ME4a LINE L1 -69 6052 6026 2270 122 0 6 chr12 118254590 118254902 -26027587 + AluSx SINE Alu 1 310 -2 409 315 35 65 chr12 118254902 118255134 -26027355 - L1ME4a LINE L1 -95 6026 5801 2199 121 0 19 chr12 118255190 118255503 -26026986 + AluSx SINE Alu 1 307 -5 552 207 28 151 chr12 118255669 118255920 -26026569 - MIR SINE MIR -25 237 18 1517 218 6 39 chr12 118255920 118256278 -26026211 - L1M4 LINE L1 -1750 4396 4051 302 273 251 22 chr12 118256485 118256760 -26025729 + L3 LINE CR1 1086 1423 -154 1317 109 6 0 chr12 118256865 118257040 -26025449 + AluSp SINE Alu 113 288 -25 1385 286 37 108 chr12 118257045 118257562 -26024927 + L2 LINE L2 1712 2264 -1050 1924 100 4 0 chr12 118257562 118257812 -26024677 + AluSq SINE Alu 1 251 -62 1385 286 37 108 chr12 118257812 118257826 -26024663 + L2 LINE L2 2264 2277 -1037 360 116 58 29 chr12 118257826 118257895 -26024594 - LTR8 LTR ERV1 -65 626 556 1385 286 37 108 chr12 118257895 118258341 -26024148 + L2 LINE L2 2277 2684 -630 2236 117 0 3 chr12 118258344 118258644 -26023845 - AluSg SINE Alu -11 299 1 592 236 32 45 chr12 118258661 118258790 -26023699 + MIR SINE MIR 19 147 -115 2162 137 0 0 chr12 118258790 118259083 -26023406 + AluSx SINE Alu 1 293 -19 592 236 32 45 chr12 118259083 118259110 -26023379 + MIR SINE MIR 147 173 -89 1086 192 8 40 chr12 118259159 118259409 -26023080 + L1MB7 LINE L1 5931 6172 -12 1802 147 0 72 chr12 118259432 118259751 -26022738 - AluJb SINE Alu -16 296 1 2176 94 25 0 chr12 118259762 118260048 -26022441 - AluSq SINE Alu -20 293 1 24 0 0 0 chr12 118260052 118260076 -26022413 + AT_rich Low_complexity Low_complexity 1 24 0 2140 129 3 22 chr12 118260085 118260396 -26022093 - AluSq SINE Alu -6 307 3 801 112 0 9 chr12 118260403 118260560 -26021929 - AluSp/q SINE Alu 0 313 177 1085 154 0 0 chr12 118260560 118260752 -26021737 + AluSg/x SINE Alu 128 319 0 447 161 37 0 chr12 118260753 118260834 -26021655 + MLT1E2 LTR MaLR 414 497 -129 278 235 0 29 chr12 118260930 118260998 -26021491 - Zaphod DNA AcHobo -3964 67 2 415 256 53 0 chr12 118261061 118261194 -26021295 - LTR67 LTR ERVL -366 191 52 283 318 0 11 chr12 118261228 118261316 -26021173 + MIR SINE MIR 157 243 -19 28 0 0 0 chr12 118261904 118261932 -26020557 + AT_rich Low_complexity Low_complexity 1 28 0 250 189 0 0 chr12 118261932 118261985 -26020504 + L1MC4 LINE L1 6648 6700 -1342 2236 100 3 0 chr12 118261985 118262274 -26020215 - AluSx SINE Alu -18 294 5 799 312 160 2 chr12 118262349 118262743 -26019746 + L2 LINE L2 2505 2960 -354 2071 116 61 0 chr12 118262913 118263207 -26019282 + AluSx SINE Alu 1 312 0 2510 63 3 3 chr12 118263214 118263515 -26018974 + AluSp SINE Alu 1 301 -12 296 250 0 0 chr12 118263928 118263988 -26018501 + L2 LINE L2 2722 2781 -533 628 108 0 0 chr12 118264400 118264483 -26018006 - AluS SINE Alu -229 84 2 841 280 83 55 chr12 118264515 118264738 -26017751 + MLT1K LTR MaLR 141 356 -232 2206 69 33 4 chr12 118264738 118265140 -26017349 + AluSp SINE Alu 1 410 0 841 280 83 55 chr12 118265140 118265351 -26017138 + MLT1K LTR MaLR 356 588 0 23 0 0 0 chr12 118265875 118265898 -26016591 + AT_rich Low_complexity Low_complexity 1 23 0 2262 82 0 0 chr12 118265968 118266273 -26016216 + AluY SINE Alu 2 306 0 1918 157 47 7 chr12 118266776 118267076 -26015413 + AluSx SINE Alu 1 312 0 1833 161 6 29 chr12 118267090 118267406 -26015083 + AluJb SINE Alu 1 309 -3 2220 149 0 0 chr12 118267574 118267883 -26014606 - AluSx SINE Alu -3 309 1 529 232 159 0 chr12 118267968 118268106 -26014383 - MIR SINE MIR 0 262 103 222 196 36 0 chr12 118268179 118268235 -26014254 + (TA)n Simple_repeat Simple_repeat 2 59 0 395 252 211 14 chr12 118268264 118268411 -26014078 - MIR SINE MIR -12 250 75 318 26 0 0 chr12 118268474 118268513 -26013976 + (CAT)n Simple_repeat Simple_repeat 3 41 0 3680 140 26 55 chr12 118268528 118268954 -26013535 + L1MB8 LINE L1 5406 5802 -376 858 168 0 0 chr12 118268954 118269085 -26013404 + FLAM_C SINE Alu 2 132 -1 3680 140 26 55 chr12 118269085 118269421 -26013068 + L1MB8 LINE L1 5802 6146 -32 2074 112 0 74 chr12 118269449 118269787 -26012702 + AluSq SINE Alu 1 313 0 3106 179 77 10 chr12 118271081 118271708 -26010781 - LTR65 LTR ERV1 0 669 1 2217 75 4 14 chr12 118271959 118272267 -26010222 - AluY SINE Alu 0 309 5 466 196 116 0 chr12 118272272 118272384 -26010105 + LTR33 LTR ERVL 397 521 0 2170 114 10 0 chr12 118272457 118272755 -26009734 + AluSq SINE Alu 11 311 -2 238 290 16 0 chr12 118272767 118272829 -26009660 + MIR SINE MIR 35 97 -165 216 97 0 0 chr12 118272840 118272871 -26009618 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 1027 169 0 40 chr12 118272911 118273082 -26009407 + L1MB7 LINE L1 5734 5895 -289 2464 90 0 0 chr12 118273082 118273382 -26009107 - AluSc SINE Alu -9 300 1 1027 169 0 40 chr12 118273382 118273435 -26009054 + L1MB7 LINE L1 5895 5949 -235 2185 144 0 0 chr12 118273473 118273785 -26008704 - AluSx SINE Alu 0 312 1 433 324 31 51 chr12 118273819 118274112 -26008377 + L2 LINE L2 1798 2084 -1230 1999 153 0 0 chr12 118274128 118274423 -26008066 - AluJo SINE Alu -17 295 1 555 270 23 17 chr12 118274505 118274679 -26007810 - MLT1I LTR MaLR -8 401 227 180 0 0 0 chr12 118274758 118274778 -26007711 + (A)n Simple_repeat Simple_repeat 1 20 0 523 227 34 74 chr12 118274778 118274954 -26007535 - MLT1I LTR MaLR -240 169 1 915 224 24 0 chr12 118275084 118275254 -26007235 - MER45A DNA AcHobo 0 178 5 2002 63 12 8 chr12 118275381 118275633 -26006856 - AluSp SINE Alu -17 296 44 2216 106 10 0 chr12 118275871 118276164 -26006325 + AluSx SINE Alu 1 296 -16 230 56 28 0 chr12 118276861 118276897 -26005592 + (GA)n Simple_repeat Simple_repeat 1 37 0 336 171 93 195 chr12 118276930 118277074 -26005415 + LTR16C LTR ERVL 225 333 -158 2069 109 0 7 chr12 118277074 118277358 -26005131 - AluSx SINE Alu -30 282 1 336 171 93 195 chr12 118277358 118277470 -26005019 + LTR16C LTR ERVL 333 455 -36 314 275 116 36 chr12 118277490 118277628 -26004861 - L2 LINE L2 -527 2787 2639 2064 136 10 10 chr12 118277916 118278226 -26004263 + AluJo SINE Alu 3 312 0 2410 64 44 3 chr12 118279249 118279545 -26002944 - AluY SINE Alu -3 308 1 2088 104 24 10 chr12 118279739 118280028 -26002461 - AluSp SINE Alu -20 293 1 1059 185 40 10 chr12 118280143 118280343 -26002146 - MER3 DNA MER1_type -2 207 2 1392 164 65 45 chr12 118280450 118280560 -26001929 + AluJb SINE Alu 15 121 -191 2233 120 3 0 chr12 118280560 118280860 -26001629 - AluSq SINE Alu 0 313 13 1674 99 0 14 chr12 118280860 118281081 -26001408 - AluSg/x SINE Alu -29 283 66 1392 164 65 45 chr12 118281081 118281261 -26001228 + AluJb SINE Alu 120 312 0 350 73 0 18 chr12 118281269 118281324 -26001165 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 539 325 11 5 chr12 118282230 118282421 -26000068 - MLT1L LTR MaLR 0 615 424 265 296 72 8 chr12 118282478 118282603 -25999886 - MLT1L LTR MaLR -341 274 142 654 281 177 50 chr12 118282662 118283300 -25999189 - L2 LINE L2 -2280 1034 316 1190 148 27 58 chr12 118283544 118283682 -25998807 + AluJo SINE Alu 5 135 -177 1574 94 0 5 chr12 118283682 118283895 -25998594 + AluSq SINE Alu 1 212 -101 664 175 9 9 chr12 118283899 118284013 -25998476 - FLAM_C SINE Alu -28 115 2 655 134 0 0 chr12 118284095 118284192 -25998297 + AluY SINE Alu 212 308 -3 421 188 0 79 chr12 118284194 118284295 -25998194 + AluJo/FRAM SINE Alu 137 229 -83 252 0 0 0 chr12 118284317 118284345 -25998144 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 391 225 27 27 chr12 118284432 118284543 -25997946 + MLT1L LTR MaLR 158 268 -347 1469 188 14 0 chr12 118284550 118284826 -25997663 + AluJo SINE Alu 1 280 -32 426 143 0 0 chr12 118284826 118284903 -25997586 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 250 178 0 0 chr12 118284950 118284995 -25997494 + MLT1L LTR MaLR 416 460 -155 576 133 0 0 chr12 118285039 118285129 -25997360 - AluS SINE Alu 0 311 222 668 180 8 0 chr12 118285130 118285258 -25997231 - L1M3 LINE L1 -468 5715 5587 2167 102 0 10 chr12 118285264 118285567 -25996922 - AluSx SINE Alu -12 300 1 21 0 0 0 chr12 118285758 118285779 -25996710 + AT_rich Low_complexity Low_complexity 1 21 0 1275 123 14 41 chr12 118287211 118287431 -25995058 + AluJo SINE Alu 1 214 -98 750 174 0 0 chr12 118287433 118287554 -25994935 - AluJo/FLAM SINE Alu -190 122 2 632 277 106 35 chr12 118287558 118287814 -25994675 - MLT1J LTR MaLR -173 338 65 1049 270 58 28 chr12 118288465 118288949 -25993540 + MLT1K LTR MaLR 66 584 -4 2279 104 3 0 chr12 118289051 118289358 -25993131 - AluSx SINE Alu -4 308 1 297 135 0 0 chr12 118289429 118289481 -25993008 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 236 295 13 13 chr12 118289583 118289645 -25992844 - L2 LINE L2 0 3272 3211 697 304 16 5 chr12 118289645 118289836 -25992653 + MIR SINE MIR 4 196 -66 549 80 0 0 chr12 118289924 118289999 -25992490 + (GA)n Simple_repeat Simple_repeat 2 76 0 741 179 130 72 chr12 118290061 118290237 -25992252 + MER20 DNA MER1_type 1 193 -26 1816 144 3 7 chr12 118290237 118290560 -25991929 + AluJo SINE Alu 1 322 0 741 179 130 72 chr12 118290560 118290589 -25991900 + MER20 DNA MER1_type 193 219 0 270 138 0 123 chr12 118290621 118290686 -25991803 + L2 LINE L2 3216 3272 0 220 200 0 0 chr12 118290686 118290736 -25991753 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 547 265 118 24 chr12 118291176 118291387 -25991102 - L2 LINE L2 0 3313 3083 379 58 0 0 chr12 118291399 118291451 -25991038 - L1MB5 LINE L1 -8 6166 6115 672 139 26 9 chr12 118291452 118291567 -25990922 + FLAM_C SINE Alu 2 118 -25 1901 124 7 20 chr12 118291579 118291885 -25990604 - AluSx SINE Alu -10 302 1 2593 147 20 15 chr12 118291894 118292351 -25990138 - L1MB5 LINE L1 -43 6131 5673 937 134 0 0 chr12 118292351 118292485 -25990004 + AluSq/x SINE Alu 1 134 -179 1824 198 26 10 chr12 118292502 118292692 -25989797 - L1MB5 LINE L1 -501 5679 5493 1963 100 25 0 chr12 118292692 118292972 -25989517 - AluSx SINE Alu -25 287 1 1824 198 26 10 chr12 118292972 118293170 -25989319 - L1MB5 LINE L1 -687 5493 5285 2145 97 0 7 chr12 118293183 118293496 -25988993 - AluSq SINE Alu 0 311 1 1739 166 0 17 chr12 118293499 118293800 -25988689 - AluJb SINE Alu -16 296 1 730 236 14 0 chr12 118293805 118293949 -25988540 - L2 LINE L2 -244 3069 2924 214 261 15 31 chr12 118293940 118294005 -25988484 + MIR SINE MIR 89 152 -110 * 598 206 120 23 chr12 118294050 118294225 -25988264 + MIR SINE MIR 63 254 -8 1461 153 8 4 chr12 118294260 118294501 -25987988 - AluJb SINE Alu -70 242 1 2051 110 3 0 chr12 118294505 118294797 -25987692 - AluSp SINE Alu -20 293 1 182 139 47 0 chr12 118294808 118294851 -25987638 + C-rich Low_complexity Low_complexity 2 46 0 972 172 18 0 chr12 118294857 118295026 -25987463 - FRAM SINE Alu -5 171 1 1258 88 119 5 chr12 118295142 118295335 -25987154 + AluSq SINE Alu 84 298 -15 301 265 145 0 chr12 118295366 118295449 -25987040 + MIR SINE MIR 43 137 -71 2270 68 7 3 chr12 118295564 118295856 -25986633 + AluSp SINE Alu 1 293 -20 342 275 210 7 chr12 118296035 118296173 -25986316 + MIR SINE MIR 52 217 -45 2263 89 10 0 chr12 118296236 118296540 -25985949 + AluSx SINE Alu 1 307 -5 2261 107 0 0 chr12 118296624 118296934 -25985555 + AluSg SINE Alu 1 310 0 347 308 67 0 chr12 118297011 118297115 -25985374 + MIR SINE MIR 19 129 -79 223 224 0 17 chr12 118297532 118297590 -25984899 - MIR SINE MIR -110 152 96 2047 111 0 20 chr12 118297598 118297936 -25984553 - AluSx SINE Alu 0 312 5 777 143 8 15 chr12 118297949 118298082 -25984407 - FLAM_C SINE Alu 0 133 2 1099 105 7 0 chr12 118298440 118298593 -25983896 - AluSg/x SINE Alu -14 298 145 2279 81 0 3 chr12 118298597 118298894 -25983595 - AluSq SINE Alu -17 296 1 779 240 159 48 chr12 118298962 118299358 -25983131 - MLT1L LTR MaLR -29 586 147 976 168 40 0 chr12 118299360 118299533 -25982956 + MER20 DNA MER1_type 4 183 -36 812 120 8 8 chr12 118299861 118299986 -25982503 - FLAM_C SINE Alu -17 126 2 251 196 0 22 chr12 118299987 118300033 -25982456 + MER20 DNA MER1_type 175 219 0 327 152 65 76 chr12 118300408 118300500 -25981989 - L1ME4a LINE L1 -56 6065 5975 2129 101 16 0 chr12 118300813 118301120 -25981369 - AluSx SINE Alu 0 312 1 1320 279 60 47 chr12 118301121 118301652 -25980837 + MLT1K LTR MaLR 35 572 -16 306 246 149 9 chr12 118301680 118301826 -25980663 + MIR SINE MIR 22 191 -61 540 194 194 101 chr12 118302026 118302274 -25980215 - Charlie8 DNA MER1_type -2005 412 142 2036 131 0 7 chr12 118302339 118302644 -25979845 - AluSx SINE Alu -9 303 1 183 274 48 0 chr12 118303064 118303126 -25979363 - MIR3 SINE MIR -139 69 5 270 164 18 18 chr12 118303359 118303414 -25979075 - Charlie8 DNA MER1_type -2267 150 96 2094 135 0 0 chr12 118303415 118303727 -25978762 - AluSx SINE Alu 0 312 1 664 75 0 0 chr12 118303727 118303807 -25978682 - AluSq/x SINE Alu -195 117 38 277 239 42 0 chr12 118304040 118304111 -25978378 - MIR SINE MIR -72 190 117 1879 139 0 14 chr12 118304409 118304704 -25977785 + AluJb SINE Alu 1 291 -21 1376 269 81 5 chr12 118304710 118305107 -25977382 + LTR16B LTR ERVL 38 464 0 515 240 73 73 chr12 118305184 118305315 -25977174 + MIR SINE MIR 1 134 -128 1266 155 4 35 chr12 118305315 118305541 -25976948 + MER20 DNA MER1_type 1 219 0 515 240 73 73 chr12 118305541 118305601 -25976888 + MIR SINE MIR 133 192 -70 201 319 17 59 chr12 118305630 118305749 -25976740 + L2 LINE L2 3197 3310 -3 317 205 51 39 chr12 118305782 118305860 -25976629 + L2 LINE L2 3194 3272 0 465 76 38 0 chr12 118306269 118306348 -25976141 + CT-rich Low_complexity Low_complexity 1 82 0 375 183 0 14 chr12 118306823 118306894 -25975595 + MIR SINE MIR 74 143 -119 546 211 23 53 chr12 118306908 118307041 -25975448 + L2 LINE L2 3184 3312 -1 590 222 97 28 chr12 118307112 118307279 -25975210 - L2 LINE L2 -13 3300 3119 2279 71 3 3 chr12 118307279 118307573 -25974916 - AluSp SINE Alu -19 294 1 2048 133 3 3 chr12 118307791 118308093 -25974396 + AluSx SINE Alu 1 302 -10 662 195 39 0 chr12 118308103 118308231 -25974258 + FLAM_C SINE Alu 1 133 0 1517 156 51 20 chr12 118308269 118308379 -25974110 - AluJo SINE Alu -8 304 199 1813 156 187 8 chr12 118308379 118308770 -25973719 + LOR1b LTR ERV1 1 461 0 1517 156 51 20 chr12 118308770 118308954 -25973535 - AluJo SINE Alu -113 199 1 828 238 98 86 chr12 118308957 118309377 -25973112 + MLT1H LTR MaLR 110 534 -15 452 210 86 49 chr12 118309370 118309383 -25973106 + MER112 DNA MER1_type 89 100 -160 * 2107 107 3 10 chr12 118309383 118309693 -25972796 + AluSx SINE Alu 1 308 -4 452 210 86 49 chr12 118309693 118309841 -25972648 + MER112 DNA MER1_type 100 256 -4 1834 132 58 0 chr12 118309897 118310192 -25972297 + AluJo SINE Alu 1 312 0 249 121 30 45 chr12 118310192 118310258 -25972231 + GA-rich Low_complexity Low_complexity 2 66 0 2235 173 7 38 chr12 118310286 118310423 -25972066 - L1MB5 LINE L1 -7 6167 6027 2204 112 0 3 chr12 118310423 118310736 -25971753 - AluSx SINE Alu 0 312 1 2235 173 7 38 chr12 118310736 118311021 -25971468 - L1MB5 LINE L1 -147 6027 5758 594 286 35 20 chr12 118311571 118311723 -25970766 + MIR SINE MIR 2 159 -103 2000 127 7 3 chr12 118311723 118312023 -25970466 + AluJo SINE Alu 1 301 -11 594 286 35 20 chr12 118312023 118312069 -25970420 + MIR SINE MIR 159 203 -59 2067 121 3 0 chr12 118312277 118312566 -25969923 - AluSx SINE Alu -22 290 1 657 240 150 21 chr12 118312566 118312958 -25969531 + LTR33 LTR ERVL 34 521 0 1713 153 4 4 chr12 118313420 118313744 -25968745 - AluJb SINE Alu 0 324 1 271 250 0 53 chr12 118313964 118314040 -25968449 + MIR SINE MIR 184 255 -7 1429 152 66 48 chr12 118314082 118314371 -25968118 + AluJb SINE Alu 1 294 -18 273 180 49 16 chr12 118315406 118315467 -25967022 + MLT1K LTR MaLR 236 298 -290 2102 127 0 6 chr12 118315477 118315791 -25966698 - AluSx SINE Alu 0 312 1 700 142 9 0 chr12 118315791 118315897 -25966592 + LTR47A LTR ERVL 346 452 0 2443 139 14 99 chr12 118316451 118316597 -25965892 + L1MB7 LINE L1 5678 5835 -349 1882 129 0 49 chr12 118316597 118316923 -25965566 + AluSx SINE Alu 1 310 -2 2443 139 14 99 chr12 118316923 118317260 -25965229 + L1MB7 LINE L1 5835 6111 -73 2038 109 0 50 chr12 118317260 118317581 -25964908 - AluSx SINE Alu -7 305 1 2443 139 14 99 chr12 118317581 118317650 -25964839 + L1MB7 LINE L1 6111 6184 0 965 120 7 13 chr12 118317933 118318083 -25964406 + AluSg/x SINE Alu 135 283 -27 480 18 0 0 chr12 118318083 118318140 -25964349 + (CA)n Simple_repeat Simple_repeat 2 58 0 2176 129 0 0 chr12 118318517 118318866 -25963623 - AluSx SINE Alu 0 350 2 825 137 15 0 chr12 118318916 118319047 -25963442 - FLAM_C SINE Alu 0 143 11 627 243 119 10 chr12 118319071 118319273 -25963216 - MIR SINE MIR 0 262 39 189 347 56 0 chr12 118319499 118319571 -25962918 + L2 LINE L2 2931 3006 -266 280 143 0 20 chr12 118319571 118319620 -25962869 - FAM SINE Alu -11 164 117 825 168 19 39 chr12 118319620 118319775 -25962714 - AluJo SINE Alu -159 153 2 361 269 21 48 chr12 118319928 118320073 -25962416 + L2 LINE L2 3161 3301 -12 237 98 0 0 chr12 118320763 118320804 -25961685 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 489 100 36 18 chr12 118320983 118321093 -25961396 + (CCCCG)n Simple_repeat Simple_repeat 3 114 0 2256 82 0 0 chr12 118322198 118322502 -25959987 - AluSx SINE Alu -7 305 2 2512 43 0 0 chr12 118322805 118323105 -25959384 + AluY SINE Alu 1 300 -11 188 319 73 81 chr12 118323207 118323455 -25959034 - L2 LINE L2 -223 3049 2804 494 239 31 15 chr12 118323639 118323769 -25958720 - Charlie8 DNA MER1_type -2191 226 95 335 245 49 12 chr12 118324378 118324489 -25958000 + MIR SINE MIR 66 184 -24 1660 162 33 23 chr12 118325316 118325619 -25956870 + AluJb SINE Alu 1 306 -6 320 237 132 35 chr12 118326254 118326368 -25956121 + MER94 DNA DNA 1 125 -9 21 0 0 0 chr12 118326643 118326664 -25955825 + AT_rich Low_complexity Low_complexity 1 21 0 2111 100 3 13 chr12 118327174 118327475 -25955014 - AluSg SINE Alu -12 298 1 243 88 0 0 chr12 118327575 118327609 -25954880 + (TA)n Simple_repeat Simple_repeat 1 34 0 1921 143 3 3 chr12 118327809 118328109 -25954380 + AluJb SINE Alu 1 300 -12 2167 108 0 3 chr12 118328160 118328456 -25954033 - AluSx SINE Alu -17 295 1 571 339 151 25 chr12 118328456 118328848 -25953641 - L2 LINE L2 -7 3265 2825 2332 75 10 0 chr12 118328991 118329296 -25953193 + AluSg SINE Alu 1 308 -2 1980 145 0 3 chr12 118329769 118330072 -25952417 - AluJb SINE Alu -2 310 9 1893 143 3 16 chr12 118330149 118330456 -25952033 + AluJo SINE Alu 1 303 -9 589 269 163 27 chr12 118330534 118330816 -25951673 - L1ME4a LINE L1 -209 5912 5565 1556 92 5 0 chr12 118330816 118331022 -25951467 - AluSg/x SINE Alu -19 293 87 589 269 163 27 chr12 118331022 118331114 -25951375 - L1ME4a LINE L1 -556 5565 5487 2065 134 0 0 chr12 118332395 118332700 -25949789 + AluSg SINE Alu 1 305 -5 2049 98 22 0 chr12 118333874 118334150 -25948339 + AluSg SINE Alu 1 282 -28 2095 132 0 7 chr12 118334260 118334549 -25947940 + AluSx SINE Alu 1 287 -25 244 0 0 0 chr12 118334549 118334576 -25947913 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2421 87 0 0 chr12 118335242 118335541 -25946948 - AluSp SINE Alu -14 299 1 288 146 0 0 chr12 118335813 118335861 -25946628 - L1MA10 LINE L1 -3 6331 6284 2075 142 3 6 chr12 118335864 118336175 -25946314 + AluJb SINE Alu 3 312 0 1590 170 0 90 chr12 118336210 118336336 -25946153 + AluJo SINE Alu 10 146 -166 2081 71 0 8 chr12 118336336 118336590 -25945899 + AluY SINE Alu 38 289 -22 1590 170 0 90 chr12 118336590 118336605 -25945884 + AluJo SINE Alu 146 161 -151 816 9 45 0 chr12 118336605 118336716 -25945773 + (TAAAA)n Simple_repeat Simple_repeat 5 120 0 1590 170 0 90 chr12 118336716 118336884 -25945605 + AluJo SINE Alu 161 292 -20 368 154 8 130 chr12 118336890 118336913 -25945576 - L1MA10 LINE L1 -46 6288 6264 1282 107 17 0 chr12 118336913 118337090 -25945399 - L1PA8 LINE L1 -1 6171 5992 431 211 19 91 chr12 118337090 118337299 -25945190 - L1ME1 LINE L1 -46 6120 5927 2347 73 0 10 chr12 118337505 118337835 -25944654 - AluSp SINE Alu 0 327 1 2212 94 0 42 chr12 118337837 118338146 -25944343 - AluSp SINE Alu -17 296 1 1951 116 10 23 chr12 118338406 118338709 -25943780 + AluSx SINE Alu 1 299 -13 2038 131 3 19 chr12 118338961 118339275 -25943214 - AluSx SINE Alu -3 309 1 1677 159 3 44 chr12 118339430 118339725 -25942764 + AluJb SINE Alu 14 296 -16 25 0 0 0 chr12 118340164 118340189 -25942300 + AT_rich Low_complexity Low_complexity 1 25 0 1174 105 12 23 chr12 118340816 118340988 -25941501 - AluSg/x SINE Alu -9 301 132 2382 91 0 0 chr12 118340988 118341321 -25941168 - AluSg SINE Alu 0 310 3 2171 113 3 0 chr12 118341326 118341618 -25940871 - AluSx SINE Alu -19 293 1 1194 105 19 0 chr12 118341672 118341834 -25940655 - AluSg/x SINE Alu -7 303 139 1679 172 3 35 chr12 118341837 118342151 -25940338 - AluJb SINE Alu -8 304 1 2245 103 7 3 chr12 118342243 118342544 -25939945 - AluSg SINE Alu -8 302 1 2113 109 0 3 chr12 118342607 118342920 -25939569 - AluSx SINE Alu 0 312 1 974 121 0 0 chr12 118343499 118343623 -25938866 + FLAM_C SINE Alu 5 128 -5 29 0 0 0 chr12 118344164 118344193 -25938296 + AT_rich Low_complexity Low_complexity 1 29 0 3234 196 65 105 chr12 118344471 118344845 -25937644 - L1MC5 LINE L1 -36 7925 7538 198 0 0 0 chr12 118344845 118344867 -25937622 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3234 196 65 105 chr12 118344867 118345288 -25937201 - L1MC5 LINE L1 -423 7538 7102 2310 92 7 0 chr12 118345288 118345581 -25936908 - AluSg1 SINE Alu -14 295 1 3234 196 65 105 chr12 118345581 118346048 -25936441 - L1MC5 LINE L1 -859 7102 6618 4435 133 36 67 chr12 118346048 118346858 -25935631 - LTR1 LTR ERV1 0 785 1 3234 196 65 105 chr12 118346858 118346903 -25935586 - L1MC5 LINE L1 -1343 6618 6573 1989 103 99 0 chr12 118346903 118347185 -25935304 - AluSg SINE Alu 0 310 1 3234 196 65 105 chr12 118347185 118347415 -25935074 - L1MC5 LINE L1 -1388 6573 6448 21 36 0 0 chr12 118347434 118347462 -25935027 + AT_rich Low_complexity Low_complexity 1 28 0 365 230 44 18 chr12 118347676 118347789 -25934700 - L1MC5 LINE L1 -1849 5959 5844 2926 138 15 31 chr12 118347808 118348328 -25934161 - L1MB8 LINE L1 -1 6413 5902 6494 118 30 5 chr12 118348339 118349352 -25933137 - L1MA8 LINE L1 0 6291 5254 1393 194 0 36 chr12 118349353 118349420 -25933069 - L1MB8 LINE L1 -820 5562 5494 1574 169 65 0 chr12 118349420 118349699 -25932790 - AluJo SINE Alu -15 297 1 1393 194 0 36 chr12 118349699 118349940 -25932549 - L1MB8 LINE L1 -888 5494 5265 656 161 26 52 chr12 118349954 118350033 -25932456 - L1MB8 LINE L1 -2493 3889 3814 2144 89 19 29 chr12 118350033 118350346 -25932143 - AluSp SINE Alu -3 310 1 656 161 26 52 chr12 118350346 118350421 -25932068 - L1MB8 LINE L1 -2568 3814 3739 2147 89 10 30 chr12 118350423 118350725 -25931764 - AluSp SINE Alu -17 296 1 331 161 0 0 chr12 118350738 118350800 -25931689 - L1MB8 LINE L1 -2582 3800 3739 1899 124 0 8 chr12 118350802 118351069 -25931420 - AluSg1 SINE Alu -22 287 23 560 138 0 0 chr12 118351069 118351149 -25931340 + AluY SINE Alu 216 295 -16 2188 131 13 0 chr12 118351157 118351463 -25931026 + AluSx SINE Alu 1 310 -2 458 258 8 0 chr12 118351470 118351602 -25930887 - L1MB8 LINE L1 -3267 3115 2983 421 131 16 0 chr12 118351602 118351663 -25930826 - Alu SINE Alu -22 289 228 3583 132 42 55 chr12 118351676 118352128 -25930361 - L1MB8 LINE L1 -3486 2896 2440 2360 86 0 3 chr12 118352128 118352420 -25930069 - AluSq SINE Alu -22 291 1 3583 132 42 55 chr12 118352420 118353309 -25929180 - L1MB8 LINE L1 -3942 2440 1653 2118 145 0 0 chr12 118353309 118353605 -25928884 - AluSx SINE Alu -16 296 1 3583 132 42 55 chr12 118353605 118353825 -25928664 - L1MB8 LINE L1 -4729 1653 1432 2207 110 0 3 chr12 118353876 118354168 -25928321 + AluSg SINE Alu 1 291 -19 21 36 0 0 chr12 118354172 118354200 -25928289 + AT_rich Low_complexity Low_complexity 1 28 0 3258 148 17 2 chr12 118354278 118354865 -25927624 - L1MB8 LINE L1 -4940 1444 849 2006 132 6 35 chr12 118354871 118355189 -25927300 - AluSx SINE Alu -3 309 1 792 203 0 0 chr12 118355226 118355344 -25927145 - FLAM_C SINE Alu -15 118 1 253 182 0 0 chr12 118355344 118355399 -25927090 - L1MB8 LINE L1 -5520 864 810 2400 64 3 0 chr12 118355399 118355696 -25926793 - AluY SINE Alu -13 298 1 1176 60 0 0 chr12 118355696 118355830 -25926659 - AluY SINE Alu -177 134 1 3715 153 78 42 chr12 118355830 118355995 -25926494 - L1MB8 LINE L1 -5571 813 655 1576 186 36 4 chr12 118355995 118356275 -25926214 + AluJb SINE Alu 1 289 -23 3715 153 78 42 chr12 118356275 118356881 -25925608 - L1MB8 LINE L1 -5729 655 14 2077 204 33 69 chr12 118356969 118357519 -25924970 - MLT2B3 LTR ERVL -24 530 1 432 260 97 33 chr12 118357594 118357872 -25924617 - L1M4 LINE L1 -1862 4284 3991 2141 131 0 22 chr12 118357943 118358256 -25924233 - AluSx SINE Alu -6 306 1 1931 135 13 33 chr12 118358259 118358562 -25923927 - AluJo SINE Alu -15 297 1 2372 104 0 0 chr12 118359134 118359443 -25923046 - AluSg SINE Alu -1 309 1 2261 128 0 0 chr12 118360037 118360349 -25922140 - AluSq SINE Alu -1 312 1 2419 80 0 0 chr12 118360423 118360722 -25921767 - AluSg SINE Alu -11 299 1 32 0 0 0 chr12 118360760 118360792 -25921697 + AT_rich Low_complexity Low_complexity 1 32 0 391 355 76 29 chr12 118361835 118362111 -25920378 + L3 LINE CR1 100 388 -1189 22 0 0 0 chr12 118362144 118362166 -25920323 + AT_rich Low_complexity Low_complexity 1 22 0 381 312 217 0 chr12 118362375 118362564 -25919925 - MIR SINE MIR -7 255 26 276 229 88 3 chr12 118362560 118362644 -25919845 + MIR SINE MIR 81 170 -38 * 825 253 131 0 chr12 118362768 118362997 -25919492 + MIR SINE MIR 2 260 -2 187 184 0 0 chr12 118363005 118363043 -25919446 + L3 LINE CR1 643 680 -897 540 156 0 37 chr12 118363256 118363365 -25919124 + L1MB3 LINE L1 6072 6176 -7 193 346 94 24 chr12 118364407 118364534 -25917955 + L3 LINE CR1 533 668 -909 * 635 287 30 42 chr12 118364532 118364636 -25917853 - MIR SINE MIR 0 262 158 1940 121 6 61 chr12 118364636 118364966 -25917523 - AluJo SINE Alu 0 312 1 635 287 30 42 chr12 118364966 118365098 -25917391 - MIR SINE MIR -104 158 29 332 298 31 62 chr12 118365096 118365257 -25917232 + L3 LINE CR1 685 840 -737 * 296 326 68 15 chr12 118365343 118365475 -25917014 + L3 LINE CR1 1040 1178 -399 1066 151 48 11 chr12 118365607 118365793 -25916696 + MER68 LTR ERV1 1 193 -369 608 103 21 0 chr12 118365811 118365908 -25916581 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 1965 190 63 0 chr12 118365910 118366258 -25916231 + MER68 LTR ERV1 193 562 0 183 360 37 22 chr12 118366258 118366394 -25916095 + L3 LINE CR1 1281 1418 -159 2012 120 0 0 chr12 118366396 118366671 -25915818 - AluSx SINE Alu -37 275 1 2492 78 0 3 chr12 118366752 118367061 -25915428 - AluY SINE Alu -3 308 1 1043 101 0 0 chr12 118368956 118369095 -25913394 + AluSq/x SINE Alu 1 139 -173 1249 126 10 15 chr12 118369139 118369151 -25913338 + AluSg/x SINE Alu 108 119 -193 9960 38 2 156 chr12 118369151 118370790 -25911699 + SVA Other Other 1 1386 0 1249 126 10 15 chr12 118370790 118370804 -25911685 + AluSg/x SINE Alu 119 132 -180 2701 45 0 3 chr12 118370804 118371116 -25911373 + AluY SINE Alu 1 311 0 1249 126 10 15 chr12 118371116 118371286 -25911203 + AluSg/x SINE Alu 132 304 -8 438 256 43 0 chr12 118372204 118372321 -25910168 + MER5C DNA MER1_type 1 122 -202 208 143 143 55 chr12 118372328 118372419 -25910070 + MER5C DNA MER1_type 226 324 0 491 251 110 26 chr12 118372426 118372617 -25909872 - L1ME LINE L1 -529 5637 5431 207 0 0 0 chr12 118372617 118372640 -25909849 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 297 222 0 0 chr12 118372671 118372734 -25909755 - L1MC4 LINE L1 -1520 6522 6460 476 231 29 0 chr12 118373218 118373322 -25909167 + Charlie1 DNA MER1_type 111 217 -2544 1972 134 0 3 chr12 118374069 118374392 -25908097 - AluSx SINE Alu 0 322 1 2395 88 0 0 chr12 118374621 118374917 -25907572 + AluSx SINE Alu 1 296 -16 817 153 8 0 chr12 118375576 118375694 -25906795 - AluSq/x SINE Alu -194 119 1 2334 83 0 20 chr12 118375893 118376194 -25906295 + AluSx SINE Alu 1 295 -17 726 291 83 17 chr12 118376321 118376610 -25905879 - L1MC4 LINE L1 -2109 5699 5392 206 304 13 13 chr12 118377152 118377231 -25905258 + (TATATG)n Simple_repeat Simple_repeat 5 83 0 301 246 115 39 chr12 118377352 118377482 -25905007 + L2 LINE L2 3133 3272 0 182 345 18 0 chr12 118377494 118377549 -25904940 + MIR SINE MIR 83 138 -124 3395 156 30 51 chr12 118378765 118379465 -25903024 - L1MB2 LINE L1 -2 6169 5485 615 168 19 0 chr12 118379483 118379590 -25902899 - AluSg/x SINE Alu -1 309 201 2198 125 0 0 chr12 118379620 118379917 -25902572 - AluSp SINE Alu -16 297 1 1347 156 0 5 chr12 118380434 118380645 -25901844 - AluJo SINE Alu -19 293 84 2072 122 3 29 chr12 118380789 118380904 -25901585 + AluSx SINE Alu 1 117 -195 2375 105 0 0 chr12 118380904 118381208 -25901281 + AluSx SINE Alu 1 304 -8 2072 122 3 29 chr12 118381208 118381404 -25901085 + AluSx SINE Alu 117 304 -8 297 323 105 0 chr12 118382033 118382166 -25900323 + MIR SINE MIR 49 195 -67 1840 176 57 0 chr12 118382774 118383110 -25899379 - MLT1D LTR MaLR 0 505 151 264 272 211 0 chr12 118385407 118385521 -25896968 - MIR SINE MIR -40 222 85 190 107 0 0 chr12 118385543 118385571 -25896918 + (TTTG)n Simple_repeat Simple_repeat 1 176 0 2047 135 0 0 chr12 118385571 118385852 -25896637 - AluSx SINE Alu -1 308 1 365 240 144 0 chr12 118387733 118387858 -25894631 - L2 LINE L2 -5 3267 3125 527 188 67 129 chr12 118387914 118388021 -25894468 + MIR SINE MIR 53 140 -122 2310 85 0 0 chr12 118388021 118388304 -25894185 + AluSg SINE Alu 3 285 -25 527 188 67 129 chr12 118388304 118388420 -25894069 + MIR SINE MIR 140 262 0 316 85 0 0 chr12 118388599 118388646 -25893843 + Alu SINE Alu 254 300 -2 2123 127 7 3 chr12 118388668 118388975 -25893514 + AluJb SINE Alu 1 308 -4 432 167 47 13 chr12 118388979 118389238 -25893251 + AluJo SINE Alu 1 311 -1 2641 59 0 0 chr12 118389317 118389624 -25892865 - AluY SINE Alu -4 307 1 2262 97 3 7 chr12 118390722 118391022 -25891467 + AluY SINE Alu 1 299 -12 1065 164 6 0 chr12 118391022 118391181 -25891308 + AluSg/x SINE Alu 132 291 -19 619 163 0 0 chr12 118391181 118391279 -25891210 + AluSg/x SINE Alu 134 231 -81 352 319 7 71 chr12 118391452 118391593 -25890896 - L2 LINE L2 -4 3268 3137 43 71 0 0 chr12 118391711 118391796 -25890693 + AT_rich Low_complexity Low_complexity 1 85 0 1639 227 63 7 chr12 118392810 118393273 -25889216 - L1MEc LINE L1 -3183 3032 2544 1698 188 123 24 chr12 118393273 118393687 -25888802 - LTR16A1 LTR ERVL -2 455 1 2767 335 52 23 chr12 118393788 118395276 -25887213 - HERV16 LTR ERVL -90 5334 3843 1566 285 31 40 chr12 118395271 118395561 -25886928 - HERV16 LTR ERVL -4369 627 336 * 2467 76 0 0 chr12 118395561 118395862 -25886627 + AluY SINE Alu 1 301 -10 1566 285 31 40 chr12 118395862 118396003 -25886486 - HERV16 LTR ERVL -4660 336 195 1950 257 15 28 chr12 118396003 118396473 -25886016 - LTR16B LTR ERVL 0 464 1 1566 285 31 40 chr12 118396473 118396622 -25885867 - HERV16 LTR ERVL -4801 195 51 2189 105 0 23 chr12 118396678 118396982 -25885507 - AluSc SINE Alu -12 297 1 1649 159 47 22 chr12 118397110 118397386 -25885103 - AluJo SINE Alu -23 289 7 897 264 111 19 chr12 118397442 118397731 -25884758 - L1MEc LINE L1 -4583 1813 1552 342 0 0 0 chr12 118397731 118397769 -25884720 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 897 264 111 19 chr12 118397769 118397991 -25884498 - L1MEc LINE L1 -4844 1552 1255 2139 112 13 25 chr12 118397994 118398308 -25884181 - AluSg SINE Alu 0 310 1 322 217 15 2 chr12 118398334 118398407 -25884082 + L1MC/D LINE L1 5696 5770 -394 767 222 58 16 chr12 118398741 118398930 -25883559 + MIR SINE MIR 50 246 -16 210 350 64 0 chr12 118399084 118399224 -25883265 + L3 LINE CR1 1399 1547 -30 2370 103 6 0 chr12 118400211 118400522 -25881967 - AluSp SINE Alu 0 313 1 2241 104 0 3 chr12 118400523 118400820 -25881669 - AluSx SINE Alu -16 296 1 413 300 111 22 chr12 118401314 118401584 -25880905 + L3 LINE CR1 661 954 -623 456 48 0 0 chr12 118401646 118401708 -25880781 - AluSx SINE Alu -11 301 240 1195 123 6 0 chr12 118401709 118401872 -25880617 - AluSx SINE Alu -148 164 1 2210 103 0 23 chr12 118401976 118402276 -25880213 - AluSg SINE Alu -17 293 1 478 284 59 39 chr12 118402276 118402480 -25880009 + L3 LINE CR1 1215 1422 -155 431 286 50 100 chr12 118403338 118403536 -25878953 - L2 LINE L2 0 3313 3107 2079 141 10 0 chr12 118403536 118403841 -25878648 + AluSx SINE Alu 1 308 -4 431 286 50 100 chr12 118403841 118403905 -25878584 - L2 LINE L2 -206 3107 3041 1990 127 0 33 chr12 118403905 118404205 -25878284 - AluJo SINE Alu -20 292 3 431 286 50 100 chr12 118404205 118404322 -25878167 - L2 LINE L2 -272 3041 2952 37 93 0 0 chr12 118405834 118405941 -25876548 + GC_rich Low_complexity Low_complexity 1 107 0 277 196 132 52 chr12 118410244 118410457 -25872032 - L2 LINE L2 -15 3298 3001 2314 91 3 13 chr12 118410695 118411002 -25871487 - AluSq SINE Alu -9 304 1 2387 104 0 0 chr12 118411617 118411926 -25870563 + AluSg SINE Alu 1 309 -1 1944 135 13 33 chr12 118412498 118412801 -25869688 + AluJo SINE Alu 1 297 -15 2151 123 0 3 chr12 118412804 118413096 -25869393 + AluSg SINE Alu 1 291 -19 21 36 0 0 chr12 118413100 118413128 -25869361 + AT_rich Low_complexity Low_complexity 1 28 0 3218 148 17 2 chr12 118413206 118413793 -25868696 - L1M4c LINE L1 -4940 1444 849 2013 132 6 35 chr12 118413799 118414117 -25868372 - AluSx SINE Alu -3 309 1 743 203 0 0 chr12 118414154 118414272 -25868217 - FLAM_C SINE Alu -15 118 1 248 182 0 0 chr12 118414272 118414327 -25868162 - L1M4c LINE L1 -5520 864 810 2426 64 3 0 chr12 118414327 118414624 -25867865 - AluY SINE Alu -13 298 1 1183 60 0 0 chr12 118414624 118414758 -25867731 - AluY SINE Alu -177 134 1 3715 153 78 42 chr12 118414758 118414923 -25867566 - L1M4c LINE L1 -5571 813 655 1593 186 36 4 chr12 118414923 118415203 -25867286 + AluJb SINE Alu 1 289 -23 3715 153 78 42 chr12 118415203 118415809 -25866680 - L1M4c LINE L1 -5729 655 14 2098 204 33 69 chr12 118415897 118416447 -25866042 - MLT2B3 LTR ERVL -24 530 1 337 304 51 28 chr12 118416583 118416800 -25865689 - L1 LINE L1 -1934 4212 3991 1206 140 0 0 chr12 118416871 118417042 -25865447 - AluSg/x SINE Alu -6 304 134 1394 69 0 6 chr12 118417165 118417338 -25865151 + AluY SINE Alu 140 311 0 22 0 0 0 chr12 118417539 118417561 -25864928 + AT_rich Low_complexity Low_complexity 1 22 0 1090 120 0 24 chr12 118418616 118418783 -25863706 + AluJb SINE Alu 134 296 -16 2240 89 24 0 chr12 118418783 118419076 -25863413 + AluSp SINE Alu 1 300 -13 2010 128 7 3 chr12 118419087 118419375 -25863114 + AluSx SINE Alu 1 289 -23 846 142 0 8 chr12 118419656 118419790 -25862699 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr12 118420240 118420262 -25862227 + AT_rich Low_complexity Low_complexity 1 22 0 2197 104 3 3 chr12 118421286 118421583 -25860906 + AluSx SINE Alu 1 297 -15 1716 164 0 57 chr12 118421596 118421914 -25860575 + AluJo SINE Alu 1 300 -12 1113 145 11 6 chr12 118422423 118422602 -25859887 + AluJb SINE Alu 1 180 -132 621 124 0 0 chr12 118422815 118422912 -25859577 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 1586 173 15 4 chr12 118422919 118423191 -25859298 - AluJo SINE Alu -37 275 1 226 232 113 53 chr12 118423191 118423342 -25859147 + L1M4 LINE L1 2219 2378 -3768 711 227 0 0 chr12 118423401 118423529 -25858960 - FLAM_A SINE Alu -3 139 12 2205 131 0 3 chr12 118423566 118423872 -25858617 - AluSx SINE Alu -7 305 1 771 136 24 59 chr12 118423880 118424049 -25858440 - L1MB4 LINE L1 0 6180 6018 248 159 0 0 chr12 118424102 118424146 -25858343 + L1M4 LINE L1 2653 2696 -3450 779 311 98 27 chr12 118424157 118424604 -25857885 + HAL1b LINE L1 397 875 -473 203 250 0 19 chr12 118424882 118424934 -25857555 + GA-rich Low_complexity Low_complexity 2 52 0 23 0 0 0 chr12 118425001 118425024 -25857465 + AT_rich Low_complexity Low_complexity 1 23 0 822 107 29 36 chr12 118425539 118425679 -25856810 + FLAM_C SINE Alu 5 143 0 2821 138 17 0 chr12 118425855 118426276 -25856213 + MSTA LTR MaLR 1 428 0 1828 163 7 11 chr12 118426946 118427229 -25855260 - AluJo SINE Alu -30 282 1 2209 114 0 0 chr12 118427679 118427994 -25854495 + AluSx SINE Alu 1 315 0 504 323 46 46 chr12 118428033 118428358 -25854131 + L2 LINE L2 2914 3238 -34 454 202 0 40 chr12 118428558 118428657 -25853832 + HAL1 LINE L1 1794 1888 -619 1051 134 0 0 chr12 118428692 118428834 -25853655 + FRAM SINE Alu 14 155 -21 803 317 88 29 chr12 118428959 118429643 -25852846 + L2 LINE L2 2560 3299 -14 2080 132 0 0 chr12 118429647 118429935 -25852554 + AluSx SINE Alu 1 288 -24 1007 149 48 5 chr12 118430581 118430769 -25851720 - L1MB4 LINE L1 0 6180 5985 1067 180 0 0 chr12 118431216 118431394 -25851095 + AluSg/x SINE Alu 126 303 -9 28 0 0 0 chr12 118431613 118431641 -25850848 + AT_rich Low_complexity Low_complexity 1 28 0 493 239 31 15 chr12 118432115 118432245 -25850244 - Charlie8 DNA MER1_type -2180 237 106 295 250 11 11 chr12 118432854 118432942 -25849547 + MIR SINE MIR 66 153 -109 1656 148 28 32 chr12 118433792 118434076 -25848413 + AluJb SINE Alu 1 283 -29 2226 125 0 3 chr12 118434108 118434413 -25848076 + AluSx SINE Alu 1 304 -8 1688 172 3 35 chr12 118434506 118434820 -25847669 + AluJb SINE Alu 1 304 -8 1200 105 19 0 chr12 118434823 118434985 -25847504 + AluSg/x SINE Alu 139 303 -7 2193 113 3 0 chr12 118435039 118435331 -25847158 + AluSx SINE Alu 1 293 -19 2403 91 0 0 chr12 118435336 118435669 -25846820 + AluSg SINE Alu 3 310 0 1094 105 12 47 chr12 118435669 118435820 -25846669 + AluSg/x SINE Alu 134 299 -13 21 0 0 0 chr12 118435820 118435841 -25846648 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr12 118436468 118436493 -25845996 + AT_rich Low_complexity Low_complexity 1 25 0 3233 124 20 0 chr12 118436731 118437223 -25845266 + Tigger3(Golem) DNA MER2_type 2528 3029 0 401 243 201 71 chr12 118437223 118437462 -25845027 + L1MEd LINE L1 62 331 -5788 1248 276 89 33 chr12 118437886 118438279 -25844210 + L1MEd LINE L1 474 844 -5275 2182 120 7 0 chr12 118438279 118438587 -25843902 + AluSx SINE Alu 1 310 -2 1248 276 89 33 chr12 118438587 118438913 -25843576 + L1MEd LINE L1 844 1233 -4886 2444 91 3 0 chr12 118439379 118439688 -25842801 + AluSp SINE Alu 1 310 -3 261 0 0 0 chr12 118439806 118439835 -25842654 + (TA)n Simple_repeat Simple_repeat 2 30 0 1578 171 36 33 chr12 118440009 118440314 -25842175 + AluJb SINE Alu 1 306 -6 314 237 132 35 chr12 118440949 118441063 -25841426 + MER94 DNA DNA 1 125 -9 21 0 0 0 chr12 118441338 118441359 -25841130 + AT_rich Low_complexity Low_complexity 1 21 0 2322 99 0 13 chr12 118441869 118442173 -25840316 - AluSx SINE Alu -12 300 1 2441 80 0 0 chr12 118442247 118442546 -25839943 - AluSg SINE Alu -11 299 1 32 0 0 0 chr12 118442584 118442616 -25839873 + AT_rich Low_complexity Low_complexity 1 32 0 321 359 73 29 chr12 118443662 118443935 -25838554 + L3 LINE CR1 104 388 -1189 22 0 0 0 chr12 118443968 118443990 -25838499 + AT_rich Low_complexity Low_complexity 1 22 0 459 208 0 0 chr12 118444368 118444445 -25838044 - L1MC5 LINE L1 -1144 6817 6741 22 0 0 0 chr12 118445468 118445490 -25836999 + AT_rich Low_complexity Low_complexity 1 22 0 274 179 0 45 chr12 118445824 118445891 -25836598 + L1ME4a LINE L1 5988 6051 -70 1292 137 26 56 chr12 118445912 118446146 -25836343 - AluJo SINE Alu -1 311 85 288 0 0 0 chr12 118446632 118446664 -25835825 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1777 140 14 28 chr12 118446667 118446953 -25835536 - AluJo SINE Alu -30 282 1 1658 113 27 58 chr12 118446978 118447235 -25835254 - AluSx SINE Alu -14 298 50 202 269 115 13 chr12 118447246 118447324 -25835165 + L2 LINE L2 3187 3272 0 892 155 30 35 chr12 118448152 118448352 -25834137 + HAL1b LINE L1 910 1108 -240 2023 74 0 8 chr12 118448501 118448759 -25833730 - AluY SINE Alu -11 300 45 31 82 0 0 chr12 118448828 118448901 -25833588 + AT_rich Low_complexity Low_complexity 1 73 0 525 284 96 43 chr12 118449112 118449164 -25833325 - L1MC4a LINE L1 -157 5964 5916 1605 202 7 14 chr12 118449164 118449461 -25833028 + AluJb SINE Alu 3 297 -15 525 284 96 43 chr12 118449461 118449759 -25832730 - L1MC4a LINE L1 -205 5916 5596 23 0 0 0 chr12 118450164 118450187 -25832302 + AT_rich Low_complexity Low_complexity 1 23 0 2365 96 0 0 chr12 118450429 118450731 -25831758 + AluSx SINE Alu 1 302 -10 205 268 0 0 chr12 118450799 118450855 -25831634 - MIR SINE MIR -33 229 174 2162 144 59 13 chr12 118451202 118451577 -25830912 - MSTB LTR MaLR -32 394 3 661 195 18 0 chr12 118451578 118451691 -25830798 - FLAM_C SINE Alu -18 115 1 1255 96 0 0 chr12 118451697 118451853 -25830636 - AluSp SINE Alu -14 299 144 2251 101 3 3 chr12 118453484 118453782 -25828707 - AluSp SINE Alu -15 298 1 2246 126 0 0 chr12 118454367 118454669 -25827820 - AluSx SINE Alu -10 302 1 2361 103 0 0 chr12 118455087 118455387 -25827102 + AluSx SINE Alu 1 300 -12 569 166 53 0 chr12 118455389 118455540 -25826949 - Tigger3(Golem) DNA MER2_type -505 2524 2366 2132 128 7 3 chr12 118455540 118455837 -25826652 + AluSx SINE Alu 1 298 -14 2074 242 45 60 chr12 118456012 118456316 -25826173 - L2 LINE L2 -734 2580 2273 2135 119 3 0 chr12 118456316 118456628 -25825861 + AluSq SINE Alu 1 313 0 2074 242 45 60 chr12 118456628 118457022 -25825467 - L2 LINE L2 -1041 2273 1892 2249 83 13 33 chr12 118457022 118457322 -25825167 - AluSg SINE Alu -16 294 1 2074 242 45 60 chr12 118457322 118457424 -25825065 - L2 LINE L2 -1422 1892 1790 2441 75 0 7 chr12 118457608 118457914 -25824575 - AluY SINE Alu -7 304 1 2045 134 20 3 chr12 118458400 118458706 -25823783 + AluSq SINE Alu 1 311 -2 295 140 140 0 chr12 118458707 118458764 -25823725 + MLT1K LTR MaLR 401 465 -123 255 340 97 0 chr12 118458940 118459084 -25823405 + L3 LINE CR1 279 436 -1141 393 136 0 0 chr12 118459084 118459143 -25823346 - Alu SINE Alu -3 298 240 1719 148 10 35 chr12 118459334 118459645 -25822844 + AluSx SINE Alu 5 307 -5 255 322 86 50 chr12 118459869 118460170 -25822319 - L2 LINE L2 -36 3236 2925 2153 135 3 6 chr12 118460788 118461162 -25821327 + AluSx SINE Alu 1 373 0 315 0 0 0 chr12 118461851 118461886 -25820603 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 851 120 0 0 chr12 118461891 118462008 -25820481 - FLAM_C SINE Alu -16 117 1 1223 166 19 66 chr12 118462157 118462428 -25820061 - AluJb SINE Alu -54 258 1 340 290 12 86 chr12 118462433 118462678 -25819811 - L1MEc LINE L1 -5095 2043 1817 241 234 0 0 chr12 118462682 118462746 -25819743 - L1MEc LINE L1 -5184 1675 1612 1054 124 0 0 chr12 118462858 118463003 -25819486 - AluSg/x SINE Alu -6 306 162 2263 126 0 0 chr12 118463021 118463331 -25819158 - AluSq SINE Alu -1 312 3 1425 207 74 0 chr12 118463335 118463606 -25818883 - AluJo SINE Alu -21 291 1 3507 179 31 61 chr12 118465001 118465046 -25817443 - L1M4 LINE L1 -1608 4538 4493 2382 99 3 0 chr12 118465046 118465349 -25817140 - AluSp SINE Alu -5 308 5 3507 179 31 61 chr12 118465349 118465364 -25817125 - L1M4 LINE L1 -1653 4493 4479 2399 74 0 0 chr12 118465364 118465671 -25816818 - AluY SINE Alu 0 307 1 3507 179 31 61 chr12 118465671 118466422 -25816067 - L1M4 LINE L1 -1667 4479 3752 2108 141 3 3 chr12 118466422 118466734 -25815755 - AluSx SINE Alu 0 312 1 3507 179 31 61 chr12 118466734 118466821 -25815668 - L1M4 LINE L1 -2394 3752 3664 660 312 177 17 chr12 118466890 118467303 -25815186 - L2 LINE L2 0 3313 2835 1101 105 0 20 chr12 118467307 118467483 -25815006 + AluSq SINE Alu 136 308 0 1013 275 123 39 chr12 118467504 118467550 -25814939 - L2 LINE L2 -493 2821 2780 1980 104 4 0 chr12 118467550 118467836 -25814653 - AluSx SINE Alu 0 312 33 1013 275 123 39 chr12 118467836 118468349 -25814140 - L2 LINE L2 -534 2780 2215 1709 148 28 28 chr12 118468903 118469186 -25813303 + AluJb SINE Alu 1 283 -29 2178 127 0 3 chr12 118469218 118469517 -25812972 + AluSx SINE Alu 1 298 -14 476 133 62 18 chr12 118469532 118469615 -25812874 + L1MB3 LINE L1 6066 6157 -26 2323 96 3 0 chr12 118469615 118469908 -25812581 - AluSp SINE Alu -19 294 1 476 133 62 18 chr12 118469908 118469937 -25812552 + L1MB3 LINE L1 6157 6183 0 1359 156 0 5 chr12 118470425 118470636 -25811853 - AluJo SINE Alu -19 293 84 2101 121 3 29 chr12 118470780 118470895 -25811594 + AluSx SINE Alu 1 117 -195 2396 105 0 0 chr12 118470895 118471199 -25811290 + AluSx SINE Alu 1 304 -8 2101 121 3 29 chr12 118471199 118471396 -25811093 + AluSx SINE Alu 117 305 -7 269 348 26 0 chr12 118472043 118472158 -25810331 + MIR SINE MIR 78 195 -67 1854 176 57 0 chr12 118472766 118473102 -25809387 - MLT1D LTR MaLR 0 505 151 229 272 211 0 chr12 118475399 118475513 -25806976 - MIR SINE MIR -40 222 85 2047 135 0 0 chr12 118475535 118475844 -25806645 - AluSx SINE Alu 0 309 1 365 240 144 0 chr12 118477725 118477850 -25804639 - L2 LINE L2 -5 3267 3125 527 188 67 129 chr12 118477906 118478013 -25804476 + MIR SINE MIR 53 140 -122 2310 85 0 0 chr12 118478013 118478296 -25804193 + AluSg SINE Alu 3 285 -25 527 188 67 129 chr12 118478296 118478412 -25804077 + MIR SINE MIR 140 262 0 316 85 0 0 chr12 118478591 118478638 -25803851 + Alu SINE Alu 254 300 -2 2123 127 7 3 chr12 118478660 118478967 -25803522 + AluJb SINE Alu 1 308 -4 432 167 47 13 chr12 118478971 118479230 -25803259 + AluJo SINE Alu 1 311 -1 2641 59 0 0 chr12 118479309 118479616 -25802873 - AluY SINE Alu -4 307 1 2262 97 3 7 chr12 118480713 118481013 -25801476 + AluY SINE Alu 1 299 -12 1458 158 21 92 chr12 118481015 118481350 -25801139 + AluSx SINE Alu 1 311 -1 2288 104 10 3 chr12 118481394 118481702 -25800787 - AluSq SINE Alu -3 310 1 1815 146 71 4 chr12 118481745 118482026 -25800463 - AluJb SINE Alu -12 300 1 260 217 0 29 chr12 118482046 118482115 -25800374 - MIR SINE MIR -36 226 160 447 156 26 0 chr12 118482115 118482192 -25800297 - AluJ/FLAM SINE Alu -232 80 2 1920 164 17 3 chr12 118482200 118482498 -25799991 - AluJb SINE Alu -10 302 1 517 260 119 53 chr12 118482511 118482665 -25799824 - L1ME LINE L1 -301 5820 5678 2538 63 3 0 chr12 118482665 118482964 -25799525 - AluSp SINE Alu -13 300 1 517 260 119 53 chr12 118482964 118483094 -25799395 - L1ME LINE L1 -443 5678 5517 279 258 41 10 chr12 118483117 118483214 -25799275 - L1ME LINE L1 -716 5458 5359 315 0 0 0 chr12 118483263 118483298 -25799191 + (TG)n Simple_repeat Simple_repeat 2 36 0 2340 119 0 0 chr12 118483301 118483612 -25798877 - AluSx SINE Alu -1 311 1 1927 124 11 0 chr12 118484385 118484651 -25797838 - AluSx SINE Alu -43 269 1 2279 110 0 3 chr12 118485020 118485321 -25797168 + AluSg SINE Alu 1 300 -10 1644 155 33 95 chr12 118485690 118485980 -25796509 - MLT2C1 LTR ERVL -3 394 136 2144 141 0 0 chr12 118485980 118486279 -25796210 - AluJb SINE Alu -13 299 1 1644 155 33 95 chr12 118486279 118486408 -25796081 - MLT2C1 LTR ERVL -261 136 1 767 216 79 87 chr12 118486451 118486854 -25795635 - MER113 DNA MER1_type? 0 521 122 25 53 0 18 chr12 118486821 118486854 -25795635 + AT_rich Low_complexity Low_complexity 1 34 -22 * 2212 112 3 0 chr12 118486854 118487141 -25795348 + AluSx SINE Alu 1 288 -24 25 53 0 18 chr12 118487141 118487164 -25795325 + AT_rich Low_complexity Low_complexity 34 56 0 2249 123 0 7 chr12 118487177 118487487 -25795002 + AluJb SINE Alu 5 312 0 243 0 0 0 chr12 118487488 118487515 -25794974 + (TA)n Simple_repeat Simple_repeat 1 27 0 263 235 12 35 chr12 118487650 118487735 -25794754 + L1MC5 LINE L1 7835 7917 -44 2408 64 0 10 chr12 118487757 118488069 -25794420 + AluY SINE Alu 1 309 -2 2053 61 4 4 chr12 118488080 118488343 -25794146 + AluSp SINE Alu 40 302 -11 952 156 69 6 chr12 118488622 118488795 -25793694 - AluJb SINE Alu -11 301 118 800 156 7 7 chr12 118488796 118488931 -25793558 + AluSg/x SINE Alu 171 305 -7 1769 114 0 117 chr12 118489293 118489626 -25792863 + AluJo SINE Alu 1 294 -8 1854 153 41 25 chr12 118489627 118489993 -25792496 + L1MB2 LINE L1 5800 6171 0 2308 76 3 0 chr12 118490667 118490968 -25791521 + AluSx SINE Alu 1 302 -10 2162 95 10 0 chr12 118491134 118491428 -25791061 + AluSx SINE Alu 1 297 -15 1656 157 0 57 chr12 118491441 118491759 -25790730 + AluJo SINE Alu 1 300 -12 1496 146 75 4 chr12 118492268 118492578 -25789911 + AluJb SINE Alu 1 329 0 1878 118 11 7 chr12 118492685 118492993 -25789496 - AluSx SINE Alu 0 309 1 457 245 53 26 chr12 118493403 118493554 -25788935 - MIR SINE MIR -27 235 81 186 341 37 49 chr12 118494551 118494633 -25787856 - L3 LINE CR1 -3 1574 1494 1898 106 0 0 chr12 118494722 118494977 -25787512 - AluSx SINE Alu -16 296 42 1787 93 104 18 chr12 118495066 118495345 -25787144 - AluSq SINE Alu -10 303 1 377 291 19 38 chr12 118495449 118495607 -25786882 + MIR SINE MIR 99 253 -9 1946 147 0 6 chr12 118495613 118495946 -25786543 - AluSx SINE Alu 0 312 1 201 65 0 0 chr12 118495946 118495957 -25786532 + (TTCC)n Simple_repeat Simple_repeat 3 13 -14 1982 109 17 10 chr12 118495957 118496251 -25786238 - AluSx SINE Alu -16 296 1 201 65 0 0 chr12 118496251 118496264 -25786225 + (TTCC)n Simple_repeat Simple_repeat 12 27 0 346 304 13 0 chr12 118498082 118498161 -25784328 - L2 LINE L2 -4 3268 3189 4137 72 45 0 chr12 118498247 118498777 -25783712 - MER41A LTR ERV1 0 554 1 242 259 200 12 chr12 118498778 118498863 -25783626 - L2 LINE L2 -94 3219 3119 385 277 124 71 chr12 118499002 118499081 -25783408 - L2 LINE L2 -996 2318 2245 1924 107 7 4 chr12 118499081 118499386 -25783103 + AluSx SINE Alu 1 306 0 385 277 124 71 chr12 118499386 118499497 -25782992 - L2 LINE L2 -1069 2245 2107 1760 147 13 20 chr12 118499497 118499797 -25782692 + AluJb SINE Alu 3 300 -12 385 277 124 71 chr12 118499797 118499871 -25782618 - L2 LINE L2 -1207 2107 2038 2093 116 0 3 chr12 118499906 118500200 -25782289 + AluSx SINE Alu 1 293 -19 268 291 162 8 chr12 118500255 118500372 -25782117 - L2 LINE L2 -219 3053 2919 2057 134 0 0 chr12 118500509 118500808 -25781681 - AluSx SINE Alu -13 299 1 882 210 45 0 chr12 118500943 118501119 -25781370 + MER5A DNA MER1_type 4 187 -2 324 284 23 11 chr12 118501124 118501212 -25781277 + MLT1K LTR MaLR 74 162 -426 505 163 69 88 chr12 118501256 118501345 -25781144 + MLT1K LTR MaLR 309 398 -190 2143 89 4 0 chr12 118501345 118501672 -25780817 + AluSx SINE Alu 1 328 0 2001 124 20 3 chr12 118501682 118501988 -25780501 + AluSq SINE Alu 1 311 -2 505 163 69 88 chr12 118501988 118502046 -25780443 + MLT1K LTR MaLR 407 465 -123 411 326 181 7 chr12 118502163 118502374 -25780115 + L3 LINE CR1 201 374 -1203 2243 83 0 0 chr12 118502374 118502663 -25779826 - AluSg SINE Alu -21 289 1 2113 104 0 3 chr12 118502664 118502961 -25779528 - AluSx SINE Alu -16 296 1 411 326 181 7 chr12 118502961 118503017 -25779472 + L3 LINE CR1 373 517 -1060 517 293 111 22 chr12 118503455 118503725 -25778764 + L3 LINE CR1 661 954 -623 460 48 0 0 chr12 118503787 118503850 -25778639 - AluSx SINE Alu -10 302 240 1126 123 6 0 chr12 118503851 118504014 -25778475 - AluSx SINE Alu -148 164 1 538 285 116 42 chr12 118504039 118504118 -25778371 + L3 LINE CR1 1118 1190 -387 2087 103 0 23 chr12 118504118 118504418 -25778071 - AluSg SINE Alu -17 293 1 538 285 116 42 chr12 118504418 118504622 -25777867 + L3 LINE CR1 1190 1422 -155 639 282 81 70 chr12 118505480 118505678 -25776811 - L2 LINE L2 0 3313 3119 1991 138 10 0 chr12 118505678 118505983 -25776506 + AluSx SINE Alu 1 308 -4 639 282 81 70 chr12 118505983 118506024 -25776465 - L2 LINE L2 -194 3119 3080 1862 127 0 43 chr12 118506024 118506347 -25776142 - AluJo SINE Alu -1 311 3 639 282 81 70 chr12 118506347 118506464 -25776025 - L2 LINE L2 -233 3080 2952 37 93 0 0 chr12 118507976 118508083 -25774406 + GC_rich Low_complexity Low_complexity 1 107 0 331 167 457 38 chr12 118512380 118512590 -25769899 - L2 LINE L2 -15 3298 3001 2184 91 3 13 chr12 118512828 118513135 -25769354 - AluSq SINE Alu -9 304 1 22 0 0 0 chr12 118513606 118513628 -25768861 + AT_rich Low_complexity Low_complexity 1 22 0 2243 78 0 14 chr12 118513879 118514174 -25768315 + AluSx SINE Alu 1 291 -21 2142 96 0 3 chr12 118514537 118514828 -25767661 - AluSx SINE Alu -22 290 1 729 140 70 28 chr12 118514864 118515007 -25767482 - AluJo SINE Alu -22 290 142 1223 187 100 42 chr12 118515014 118515303 -25767186 - AluJo SINE Alu -6 306 1 2092 109 3 3 chr12 118515314 118515617 -25766872 - AluSq SINE Alu -10 303 1 22 0 0 0 chr12 118516641 118516663 -25765826 + AT_rich Low_complexity Low_complexity 1 22 0 854 142 0 8 chr12 118517113 118517247 -25765242 - AluJo SINE Alu -169 133 1 1890 131 7 3 chr12 118517525 118517816 -25764673 - AluSx SINE Alu -20 292 1 2114 89 24 0 chr12 118517827 118518120 -25764369 - AluSp SINE Alu -13 300 1 2087 107 0 7 chr12 118518120 118518418 -25764071 - AluSx SINE Alu -15 297 1 1941 101 20 29 chr12 118518553 118518859 -25763630 - AluSq SINE Alu -10 303 1 1954 110 7 7 chr12 118519190 118519481 -25763008 - AluSx SINE Alu -21 291 1 854 188 13 0 chr12 118519550 118519704 -25762785 + AluJb SINE Alu 134 289 -23 2003 80 45 3 chr12 118519993 118520280 -25762209 - AluSg SINE Alu -11 299 1 255 93 0 0 chr12 118520282 118520325 -25762164 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1796 142 0 4 chr12 118520326 118520607 -25761882 - AluSq SINE Alu -32 281 2 351 0 0 0 chr12 118520739 118520778 -25761711 + (TG)n Simple_repeat Simple_repeat 2 40 0 1071 146 0 0 chr12 118520783 118520954 -25761535 - AluSg/x SINE Alu -6 306 136 2349 83 0 0 chr12 118520955 118521255 -25761234 - AluY SINE Alu -11 300 1 1643 141 43 4 chr12 118521294 118521571 -25760918 + AluSx SINE Alu 5 292 -20 2061 109 7 3 chr12 118521738 118522031 -25760458 - AluSx SINE Alu -18 294 1 1342 214 17 10 chr12 118522078 118522377 -25760112 - AluJo SINE Alu -11 301 1 539 264 144 5 chr12 118522800 118523001 -25759488 - MIR SINE MIR -4 258 30 221 0 35 0 chr12 118523015 118523044 -25759445 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 764 111 0 0 chr12 118523047 118523155 -25759334 - AluSg/x SINE Alu -32 280 173 21 0 0 0 chr12 118523720 118523741 -25758748 + AT_rich Low_complexity Low_complexity 1 21 0 2095 108 10 3 chr12 118524070 118524365 -25758124 + AluSc SINE Alu 1 297 -12 1557 167 15 4 chr12 118524522 118524810 -25757679 - AluJb SINE Alu 0 308 18 1977 113 0 10 chr12 118525350 118525643 -25756846 + AluSc SINE Alu 1 290 -19 630 246 121 9 chr12 118525658 118525882 -25756607 - L1MC4 LINE L1 -85 7957 7709 1602 141 14 21 chr12 118525901 118526184 -25756305 - AluJb SINE Alu -31 281 1 286 220 60 80 chr12 118526361 118526461 -25756028 + MER5B DNA MER1_type 2 99 -79 1519 172 13 23 chr12 118526531 118526834 -25755655 - AluJb SINE Alu -12 300 1 1043 68 0 0 chr12 118526836 118526968 -25755521 - AluSp SINE Alu -181 132 1 180 163 0 0 chr12 118526977 118527020 -25755469 + (TCCG)n Simple_repeat Simple_repeat 2 44 0 * 324 120 0 0 chr12 118527010 118527060 -25755429 + (TCCCC)n Simple_repeat Simple_repeat 3 52 0 1420 152 22 54 chr12 118527097 118527264 -25755225 - AluJo SINE Alu -7 305 151 1970 96 48 14 chr12 118527264 118527556 -25754933 - AluY SINE Alu -9 302 1 1420 152 22 54 chr12 118527556 118527703 -25754786 - AluJo SINE Alu -161 151 1 804 134 0 8 chr12 118527961 118528080 -25754409 - FLAM_C SINE Alu -15 118 1 703 326 110 22 chr12 118528286 118528731 -25753758 + L2 LINE L2 2371 2854 -460 1027 135 78 5 chr12 118529024 118529217 -25753272 - L1MB3 LINE L1 -4 6179 5973 1785 151 3 7 chr12 118529470 118529809 -25752680 - AluSg SINE Alu 0 310 1 21 0 0 0 chr12 118530135 118530156 -25752333 + AT_rich Low_complexity Low_complexity 1 21 0 1672 132 0 51 chr12 118530157 118530304 -25752185 - AluSx SINE Alu -31 281 128 267 79 0 0 chr12 118530304 118530342 -25752147 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2047 81 3 18 chr12 118530342 118530626 -25751863 - AluSc SINE Alu -29 280 1 1672 132 0 51 chr12 118530626 118530773 -25751716 - AluSx SINE Alu -182 130 1 2676 192 134 32 chr12 118530796 118531756 -25750733 - L1MB7 LINE L1 -75 6109 5057 364 167 0 33 chr12 118531779 118531839 -25750650 + AluJ/FLAM SINE Alu 3 60 -242 2143 109 0 13 chr12 118531844 118532146 -25750343 - AluSx SINE Alu -14 298 1 787 196 11 34 chr12 118532164 118532343 -25750146 + FRAM SINE Alu 1 169 -7 1486 193 103 53 chr12 118532344 118532868 -25749621 - L1MB7 LINE L1 -1170 4976 4427 2196 55 0 28 chr12 118532939 118533251 -25749238 - AluY SINE Alu 0 304 1 21 0 0 0 chr12 118533256 118533277 -25749212 + AT_rich Low_complexity Low_complexity 1 21 0 2009 173 52 21 chr12 118533277 118533649 -25748840 - L1PA16 LINE L1 -21 6145 5786 1382 158 12 106 chr12 118533649 118533971 -25748518 - AluSp SINE Alu -21 292 1 2009 173 52 21 chr12 118533971 118534135 -25748354 - L1PA16 LINE L1 -380 5786 5629 1615 190 3 10 chr12 118534135 118534445 -25748044 - AluJb SINE Alu -3 309 2 2009 173 52 21 chr12 118534445 118534923 -25747566 - L1PA16 LINE L1 -537 5629 4986 1543 217 75 5 chr12 118534923 118535296 -25747193 - L1MB7 LINE L1 -1764 4382 3984 2456 77 0 0 chr12 118536058 118536370 -25746119 - AluSx SINE Alu 0 312 1 1875 146 0 19 chr12 118536533 118536841 -25745648 + AluJb SINE Alu 1 302 -10 1090 199 107 34 chr12 118537047 118537338 -25745151 - AluJo SINE Alu 0 312 1 564 217 87 0 chr12 118538162 118538240 -25744249 - FLAM_C SINE Alu -187 125 32 2144 85 0 27 chr12 118538240 118538535 -25743954 + AluSg SINE Alu 21 307 -3 564 217 87 0 chr12 118538535 118538571 -25743918 - FLAM_C SINE Alu -280 32 1 889 152 0 0 chr12 118538668 118538793 -25743696 + FLAM_C SINE Alu 1 125 -18 1521 146 41 51 chr12 118538816 118539110 -25743379 + AluJb SINE Alu 1 291 -21 321 231 207 16 chr12 118539154 118539275 -25743214 - MER5A DNA MER1_type 0 189 46 2055 157 0 0 chr12 118539480 118539792 -25742697 + AluSx SINE Alu 1 312 0 2193 100 7 10 chr12 118540218 118540527 -25741962 - AluY SINE Alu -3 308 1 2148 110 7 23 chr12 118540618 118540927 -25741562 - AluSx SINE Alu -8 304 1 2308 110 7 0 chr12 118540960 118541270 -25741219 + AluSp SINE Alu 1 312 -1 357 229 86 63 chr12 118541492 118541667 -25740822 + MIR SINE MIR 84 262 0 2518 70 0 0 chr12 118541779 118542077 -25740412 - AluY SINE Alu -12 299 2 233 301 57 15 chr12 118542443 118542549 -25739940 - MIR SINE MIR -62 146 38 1994 112 7 0 chr12 118542571 118542840 -25739649 + AluSx SINE Alu 1 271 -41 1254 115 6 0 chr12 118542846 118543020 -25739469 + AluSq SINE Alu 130 304 -9 295 244 98 32 chr12 118543458 118543581 -25738908 - L2 LINE L2 -1 3312 3182 1758 99 121 18 chr12 118544316 118544589 -25737900 - AluSx SINE Alu 0 302 2 2038 129 18 0 chr12 118545400 118545686 -25736803 - AluSx SINE Alu -21 291 1 1049 179 0 37 chr12 118545968 118546158 -25736331 + AluJb SINE Alu 130 312 0 224 111 49 49 chr12 118546523 118546604 -25735885 + (TA)n Simple_repeat Simple_repeat 1 81 0 891 207 76 10 chr12 118546762 118546960 -25735529 + MER46A DNA MER2_type 26 236 0 2033 144 7 3 chr12 118547859 118548165 -25734324 + AluSx SINE Alu 1 307 -5 433 191 0 0 chr12 118548377 118548461 -25734028 - AluSx SINE Alu -6 304 221 985 168 0 12 chr12 118548461 118548622 -25733867 - AluSx SINE Alu -128 184 26 1074 32 0 0 chr12 118548904 118549028 -25733461 - AluY SINE Alu -13 298 175 619 169 154 15 chr12 118549270 118549400 -25733089 + AluJb SINE Alu 146 293 -19 2058 120 0 0 chr12 118550122 118550397 -25732092 - AluSx SINE Alu -37 275 1 1684 150 66 0 chr12 118550440 118550713 -25731776 + AluJb SINE Alu 1 291 -21 2067 113 0 0 chr12 118551339 118551614 -25730875 - AluSg SINE Alu -17 293 19 477 181 0 0 chr12 118551629 118551712 -25730777 + AluJ/FLAM SINE Alu 2 84 -228 1756 158 56 0 chr12 118551741 118552025 -25730464 - AluSx SINE Alu -12 300 1 25 51 0 0 chr12 118552025 118552064 -25730425 + AT_rich Low_complexity Low_complexity 1 39 0 2119 110 24 3 chr12 118552264 118552555 -25729934 + AluSx SINE Alu 1 297 -15 1587 183 7 21 chr12 118552624 118552913 -25729576 + AluJb SINE Alu 12 296 -16 315 301 53 0 chr12 118553721 118553854 -25728635 + L1MC4 LINE L1 7886 8025 -17 2116 125 10 0 chr12 118555203 118555500 -25726989 + AluSx SINE Alu 3 302 -10 1546 192 14 14 chr12 118555500 118555780 -25726709 - AluJb SINE Alu -31 281 1 1536 157 67 73 chr12 118555929 118556273 -25726216 + MER2 DNA MER2_type 2 343 -1 2306 98 0 16 chr12 118556318 118556634 -25725855 - AluSp SINE Alu -2 311 1 273 169 115 41 chr12 118556784 118556953 -25725536 - LTR37A LTR ERV1 -5 463 242 368 227 52 0 chr12 118556998 118557095 -25725394 - LTR37B LTR ERV1 -366 102 1 2130 105 20 14 chr12 118557874 118558168 -25724321 + AluSx SINE Alu 1 296 -16 1943 117 11 4 chr12 118558274 118558548 -25723941 - AluSg1 SINE Alu -33 276 1 543 272 284 18 chr12 118561081 118561482 -25721007 + L2 LINE L2 1249 1756 -1558 2382 77 7 3 chr12 118561499 118561798 -25720691 - AluSx SINE Alu -10 302 3 243 139 23 0 chr12 118561809 118561852 -25720637 + L1M4 LINE L1 3623 3666 -2480 202 206 0 0 chr12 118561858 118561892 -25720597 + (TGG)n Simple_repeat Simple_repeat 3 36 0 701 200 100 0 chr12 118562296 118562436 -25720053 + FRAM SINE Alu 2 155 -11 353 255 170 0 chr12 118564770 118564876 -25717613 + L1M4 LINE L1 4095 4218 -1928 342 258 219 4 chr12 118564880 118565113 -25717376 + L2 LINE L2 1916 2198 -1116 335 263 160 23 chr12 118565113 118565288 -25717201 - MER3 DNA MER1_type -10 199 1 1433 128 57 4 chr12 118565378 118565605 -25716884 - AluSq SINE Alu -19 294 56 282 273 173 69 chr12 118565643 118566106 -25716383 + L2 LINE L2 2732 3257 -56 2280 102 3 7 chr12 118567168 118567473 -25715016 + AluSp SINE Alu 2 305 -8 2156 100 21 0 chr12 118568504 118568793 -25713696 + AluSx SINE Alu 1 295 -17 1562 133 87 14 chr12 118569666 118569952 -25712537 - AluSx SINE Alu -5 307 1 228 111 0 0 chr12 118573930 118573966 -25708523 + (CACCC)n Simple_repeat Simple_repeat 1 36 0 192 77 0 0 chr12 118574474 118574500 -25707989 + (TG)n Simple_repeat Simple_repeat 2 27 0 623 167 40 40 chr12 118575497 118575623 -25706866 + FLAM_C SINE Alu 1 126 -7 1683 65 134 40 chr12 118578641 118578763 -25703726 + AluY SINE Alu 6 115 -196 2599 68 0 0 chr12 118578763 118579073 -25703416 + AluY SINE Alu 2 311 0 1683 65 134 40 chr12 118579073 118579197 -25703292 + AluY SINE Alu 115 275 -36 252 274 27 0 chr12 118579325 118579398 -25703091 + L1MC3 LINE L1 4091 4165 -1981 1380 220 4 0 chr12 118580519 118580778 -25701711 - AluJo SINE Alu -52 260 1 337 258 59 51 chr12 118580837 118581093 -25701396 + L1MC3 LINE L1 5680 5937 -1871 3658 160 154 42 chr12 118581143 118581339 -25701150 + L1MC3 LINE L1 6433 6606 -1179 1544 171 63 3 chr12 118581339 118581625 -25700864 + AluJb SINE Alu 1 303 -9 3658 160 154 42 chr12 118581625 118582372 -25700117 + L1MC3 LINE L1 6606 7481 -304 2229 111 0 16 chr12 118582403 118582710 -25699779 + AluSx SINE Alu 1 302 -10 2279 75 6 62 chr12 118582710 118583032 -25699457 + AluY SINE Alu 1 304 -7 993 196 22 31 chr12 118583038 118583089 -25699400 + AluJo SINE Alu 85 135 -177 1885 136 0 35 chr12 118583089 118583406 -25699083 + AluSg SINE Alu 1 306 -4 993 196 22 31 chr12 118583406 118583583 -25698906 + AluJo SINE Alu 135 311 -1 2251 97 3 0 chr12 118583636 118583924 -25698565 + AluSp SINE Alu 1 289 -24 475 202 11 0 chr12 118584093 118584182 -25698307 + AluS SINE Alu 2 91 -222 * 606 183 10 0 chr12 118584177 118584281 -25698208 + AluJb SINE Alu 162 266 -46 23 0 0 0 chr12 118584302 118584325 -25698164 + AT_rich Low_complexity Low_complexity 1 23 0 459 114 57 0 chr12 118584325 118584395 -25698094 + FLAM_A SINE Alu 2 75 -57 1523 184 6 52 chr12 118584420 118584747 -25697742 + AluJb SINE Alu 1 312 0 258 270 146 91 chr12 118584783 118585014 -25697475 + L1MEc LINE L1 1420 1670 -4726 2106 134 16 7 chr12 118585014 118585321 -25697168 + AluSx SINE Alu 1 310 -2 258 270 146 91 chr12 118585321 118585363 -25697126 + L1MEc LINE L1 1670 1708 -4688 2368 85 3 20 chr12 118585721 118586026 -25696463 - AluY SINE Alu -11 300 1 817 159 0 8 chr12 118586146 118586272 -25696217 + FLAM_C SINE Alu 1 125 -8 1179 109 0 0 chr12 118586280 118586427 -25696062 + AluSg SINE Alu 1 147 -163 1260 147 30 0 chr12 118586474 118586672 -25695817 + AluJb SINE Alu 90 293 -19 22 0 0 0 chr12 118586759 118586781 -25695708 + AT_rich Low_complexity Low_complexity 1 22 0 1383 129 0 15 chr12 118586847 118587048 -25695441 - AluSx SINE Alu -69 243 46 2446 91 0 0 chr12 118587049 118587346 -25695143 - AluSg SINE Alu -13 297 1 2324 107 3 0 chr12 118587350 118587659 -25694830 - 7SLRNA srpRNA srpRNA -10 310 1 1124 166 0 0 chr12 118587676 118587851 -25694638 + AluJb SINE Alu 132 306 -6 2089 122 21 0 chr12 118587861 118588149 -25694340 + AluSx SINE Alu 1 294 -18 1903 149 7 7 chr12 118588422 118588710 -25693779 + AluSx SINE Alu 1 288 -24 539 245 116 37 chr12 118588750 118588809 -25693680 + L1ME LINE L1 5049 5102 -1060 1772 86 115 57 chr12 118588809 118589088 -25693401 + AluY SINE Alu 1 295 -16 539 245 116 37 chr12 118589088 118589472 -25693017 + L1ME LINE L1 5102 5518 -644 976 141 51 6 chr12 118589639 118589816 -25692673 + L1MC3 LINE L1 7408 7592 -193 1796 115 86 4 chr12 118589816 118590094 -25692395 + AluSx SINE Alu 1 301 -11 948 165 41 31 chr12 118590105 118590137 -25692352 + L1MC2 LINE L1 6138 6168 -176 2100 102 0 16 chr12 118590137 118590441 -25692048 + AluSg SINE Alu 1 299 -11 948 165 41 31 chr12 118590441 118590602 -25691887 + L1MC2 LINE L1 6168 6333 -11 1124 184 9 9 chr12 118590612 118590829 -25691660 + AluJo SINE Alu 1 217 -95 1313 44 0 0 chr12 118590868 118591027 -25691462 - AluY SINE Alu -17 294 136 189 196 0 0 chr12 118591028 118591074 -25691415 + (TA)n Simple_repeat Simple_repeat 2 47 0 1853 122 0 38 chr12 118591132 118591296 -25691193 - AluSx SINE Alu -15 297 147 2155 94 13 0 chr12 118591296 118591595 -25690894 - AluSp SINE Alu -10 303 1 1853 122 0 38 chr12 118591595 118591718 -25690771 - AluSx SINE Alu -165 147 21 2133 109 0 0 chr12 118591721 118592015 -25690474 - AluSg1 SINE Alu -15 294 1 1046 93 0 7 chr12 118592019 118592159 -25690330 - AluSq/x SINE Alu -174 139 1 309 237 46 46 chr12 118592160 118592291 -25690198 + MER97c DNA MER1_type? 932 1062 -28 2359 70 0 0 chr12 118592292 118592593 -25689896 + AluY SINE Alu 1 301 -10 181 302 0 0 chr12 118592629 118592672 -25689817 + MIR SINE MIR 198 240 -22 549 252 42 138 chr12 118592672 118592714 -25689775 + MER34 LTR ERV1 1 45 -497 1791 151 23 3 chr12 118592714 118593018 -25689471 + AluJo SINE Alu 1 310 -2 549 252 42 138 chr12 118593018 118593079 -25689410 + MER34 LTR ERV1 45 110 -432 1851 130 46 0 chr12 118593079 118593363 -25689126 + AluSx SINE Alu 1 297 -15 549 252 42 138 chr12 118593363 118593825 -25688664 + MER34 LTR ERV1 110 513 -29 3622 64 14 36 chr12 118593871 118594096 -25688393 - LTR15 LTR ERV1 -6 487 259 2666 7 3 0 chr12 118594096 118594396 -25688093 - AluYa5 SINE Alu -10 301 1 3622 64 14 36 chr12 118594396 118594668 -25687821 - LTR15 LTR ERV1 -234 259 1 1452 78 0 0 chr12 118594701 118594893 -25687596 - AluY SINE Alu 0 311 120 413 199 212 60 chr12 118594896 118595012 -25687477 - L2 LINE L2 -1378 1936 1839 1870 132 3 7 chr12 118595012 118595307 -25687182 - AluSx SINE Alu -18 294 1 2222 80 3 13 chr12 118595312 118595612 -25686877 - AluSg SINE Alu -13 297 1 413 199 212 60 chr12 118595612 118595640 -25686849 - L2 LINE L2 -1478 1836 1763 718 174 70 76 chr12 118595641 118595813 -25686676 + MER20 DNA MER1_type 2 172 -47 908 164 19 0 chr12 118595835 118595994 -25686495 + AluSg/x SINE Alu 137 298 -14 230 196 22 0 chr12 118596014 118596060 -25686429 + MER20 DNA MER1_type 173 219 0 295 190 170 0 chr12 118596061 118596161 -25686328 - L2 LINE L2 -1545 1769 1653 2271 105 0 0 chr12 118596202 118596507 -25685982 + AluSg SINE Alu 1 305 -5 1694 153 7 20 chr12 118596641 118596969 -25685520 - AluJo SINE Alu 0 328 5 925 168 6 0 chr12 118596971 118597138 -25685351 - FRAM SINE Alu -12 164 1 1194 148 43 5 chr12 118597239 118597469 -25685020 - AluJb SINE Alu 0 301 64 3379 100 19 4 chr12 118597470 118597950 -25684539 + LTR15 LTR ERV1 1 487 -6 421 154 0 0 chr12 118597956 118598021 -25684468 - AluJb SINE Alu -246 66 2 187 192 144 115 chr12 118598122 118598226 -25684263 - MIR3 SINE MIR -3 205 99 2160 148 57 73 chr12 118598754 118598904 -25683585 + L1MB4 LINE L1 5660 5811 -369 2094 107 7 0 chr12 118598904 118599194 -25683295 + AluSx SINE Alu 1 292 -20 2160 148 57 73 chr12 118599194 118599308 -25683181 + L1MB4 LINE L1 5811 5925 -255 1954 130 0 17 chr12 118599308 118599608 -25682881 - AluSx SINE Alu -17 295 1 2160 148 57 73 chr12 118599608 118599847 -25682642 + L1MB4 LINE L1 5925 6156 -24 297 143 157 0 chr12 118599860 118599930 -25682559 + L1MB8 LINE L1 6089 6169 -9 2349 80 3 3 chr12 118599931 118600242 -25682247 - AluSp SINE Alu -2 311 1 372 249 43 120 chr12 118600952 118601088 -25681401 + MIR SINE MIR 31 176 -86 2143 112 0 3 chr12 118601088 118601401 -25681088 - AluSx SINE Alu 0 312 1 2042 99 0 119 chr12 118601401 118601603 -25680886 - AluSx SINE Alu 0 302 77 2219 100 0 3 chr12 118601603 118601914 -25680575 - AluSg SINE Alu 0 310 1 2006 114 17 0 chr12 118601914 118602212 -25680277 - AluSq SINE Alu -8 305 3 2042 99 0 119 chr12 118602212 118602351 -25680138 - AluSx SINE Alu -223 79 1 372 249 43 120 chr12 118602351 118602422 -25680067 + MIR SINE MIR 174 223 -39 1962 125 0 0 chr12 118602867 118603147 -25679342 - AluSx SINE Alu -8 304 25 2168 110 0 0 chr12 118603180 118603480 -25679009 - AluSc SINE Alu -9 300 1 2080 100 14 0 chr12 118603701 118603992 -25678497 - AluSg SINE Alu -15 295 1 271 232 136 62 chr12 118604176 118604206 -25678283 - L1ME4a LINE L1 -201 5920 5894 1962 112 7 3 chr12 118604206 118604493 -25677996 - AluSg SINE Alu -22 288 1 271 232 136 62 chr12 118604493 118604638 -25677851 - L1ME4a LINE L1 -227 5894 5732 375 23 0 0 chr12 118606437 118606481 -25676008 + (TG)n Simple_repeat Simple_repeat 2 45 0 902 132 0 22 chr12 118606538 118606674 -25675815 + FLAM_C SINE Alu 1 133 0 2561 51 0 0 chr12 118606684 118606995 -25675494 + AluY SINE Alu 1 311 0 2063 113 7 0 chr12 118607125 118607417 -25675072 + AluSx SINE Alu 1 294 -18 180 77 0 0 chr12 118607481 118607507 -25674982 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr12 118607644 118607666 -25674823 + AT_rich Low_complexity Low_complexity 1 22 0 2118 35 24 38 chr12 118607668 118607958 -25674531 + AluY SINE Alu 1 286 -25 317 269 0 43 chr12 118607959 118608052 -25674437 + L1MC4 LINE L1 6614 6702 -1340 361 200 0 100 chr12 118608057 118608157 -25674332 - L1MC4 LINE L1 -1339 6703 6614 234 237 0 0 chr12 118608157 118608233 -25674256 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 314 250 21 62 chr12 118608235 118608331 -25674158 + L1MC4 LINE L1 6614 6705 -1337 697 119 30 0 chr12 118608332 118608433 -25674056 + AluSq/x SINE Alu 2 105 -208 683 67 0 11 chr12 118608449 118608539 -25673950 - AluJb SINE Alu -14 298 210 778 172 8 15 chr12 118608683 118608798 -25673691 + AluJo/FLAM SINE Alu 1 116 -186 2165 110 3 0 chr12 118608798 118609107 -25673382 + AluSx SINE Alu 2 311 -1 778 172 8 15 chr12 118609107 118609125 -25673364 + AluJo/FLAM SINE Alu 116 133 -169 1154 153 30 0 chr12 118609133 118609335 -25673154 + AluJb SINE Alu 96 303 -9 2175 82 0 13 chr12 118609596 118609899 -25672590 - AluY SINE Alu -12 299 1 2075 69 6 82 chr12 118609900 118610078 -25672411 - AluSp SINE Alu -18 295 150 2308 91 0 0 chr12 118610078 118610385 -25672104 - AluSq SINE Alu -6 307 1 2075 69 6 82 chr12 118610385 118610525 -25671964 - AluSp SINE Alu -163 150 1 1386 150 47 72 chr12 118610574 118610934 -25671555 + L1MB7 LINE L1 5814 6164 -20 21 0 0 0 chr12 118611357 118611378 -25671111 + AT_rich Low_complexity Low_complexity 1 21 0 2335 55 0 29 chr12 118611405 118611712 -25670777 - AluY SINE Alu -13 298 1 1999 122 0 7 chr12 118611720 118612008 -25670481 - AluSx SINE Alu -26 286 1 369 0 0 0 chr12 118612790 118612831 -25669658 + (CA)n Simple_repeat Simple_repeat 2 42 0 264 111 0 0 chr12 118612850 118612886 -25669603 - Charlie4 DNA MER1_type -1925 36 1 2367 72 0 0 chr12 118613451 118613744 -25668745 - AluSx SINE Alu -19 293 1 1953 151 0 0 chr12 118614090 118614394 -25668095 + AluSx SINE Alu 1 304 -8 2101 112 0 3 chr12 118614394 118614697 -25667792 + AluSc SINE Alu 1 302 -7 1977 85 53 0 chr12 118614728 118615009 -25667480 - AluSp SINE Alu -17 296 1 1961 114 14 0 chr12 118615066 118615355 -25667134 - AluSx SINE Alu -13 299 7 604 90 0 0 chr12 118615356 118615434 -25667055 - AluJo SINE Alu -175 137 60 1805 152 0 7 chr12 118615627 118615924 -25666565 + AluY SINE Alu 1 295 -16 212 182 23 0 chr12 118615926 118615970 -25666519 + L2 LINE L2 3268 3312 -1 1211 201 18 0 chr12 118615983 118616202 -25666287 - MER58A DNA MER1_type -1 223 1 2368 74 0 0 chr12 118616623 118616922 -25665567 - AluY SINE Alu -12 299 1 2295 77 0 3 chr12 118616922 118617219 -25665270 - AluY SINE Alu -15 296 1 2081 92 25 0 chr12 118617222 118617505 -25664984 - AluSg SINE Alu -18 292 3 328 213 84 84 chr12 118617562 118617614 -25664875 - HAL1b LINE L1 0 1348 1297 1344 154 24 139 chr12 118617614 118617825 -25664664 - AluJo SINE Alu -8 294 133 2127 104 3 3 chr12 118617825 118618124 -25664365 + AluSq SINE Alu 1 299 -14 1344 154 24 139 chr12 118618124 118618243 -25664246 - AluJo SINE Alu -169 133 2 328 213 84 84 chr12 118618243 118618402 -25664087 - HAL1b LINE L1 -51 1297 1134 2159 113 0 0 chr12 118618402 118618704 -25663785 + AluSx SINE Alu 1 302 -10 328 213 84 84 chr12 118618704 118618825 -25663664 - HAL1b LINE L1 -213 1135 1015 2327 50 0 27 chr12 118619200 118619497 -25662992 - AluY SINE Alu -17 294 6 1973 145 0 0 chr12 118619505 118619809 -25662680 - AluSx SINE Alu -8 304 1 254 220 0 34 chr12 118619931 118619990 -25662499 + L2 LINE L2 3257 3313 0 2099 119 7 3 chr12 118620046 118620348 -25662141 - AluSp SINE Alu -10 303 1 2130 121 0 0 chr12 118620365 118620662 -25661827 - AluSx SINE Alu -15 297 1 1209 165 89 122 chr12 118621761 118621899 -25660590 - MER63 DNA MER1_type 0 1060 919 1923 119 14 3 chr12 118621899 118622193 -25660296 + AluSx SINE Alu 1 297 -15 1209 165 89 122 chr12 118622193 118622234 -25660255 - MER63 DNA MER1_type -141 919 878 834 176 0 0 chr12 118622234 118622365 -25660124 - FLAM_C SINE Alu -1 132 2 2102 106 3 0 chr12 118622375 118622668 -25659821 - AluSp SINE Alu -13 300 7 1209 165 89 122 chr12 118622668 118622689 -25659800 - MER63 DNA MER1_type -191 869 849 2373 65 0 0 chr12 118622689 118622983 -25659506 - AluSg SINE Alu -15 295 2 1209 165 89 122 chr12 118622983 118623164 -25659325 - MER63 DNA MER1_type -211 849 679 267 290 57 33 chr12 118623186 118623332 -25659157 + MIR SINE MIR 45 191 -58 334 267 275 0 chr12 118623440 118623571 -25658918 - L2 LINE L2 0 3272 3106 1998 110 0 36 chr12 118623574 118623901 -25658588 + AluSc SINE Alu 5 309 0 647 218 95 17 chr12 118623944 118623964 -25658525 + MIR SINE MIR 21 38 -224 1681 160 51 7 chr12 118623964 118624257 -25658232 - AluJo SINE Alu -6 306 1 647 218 95 17 chr12 118624257 118624415 -25658074 + MIR SINE MIR 38 213 -49 1461 165 92 4 chr12 118624472 118624744 -25657745 + AluJo SINE Alu 1 296 -16 2155 69 11 0 chr12 118624877 118625151 -25657338 - AluSg SINE Alu -33 277 1 432 237 97 65 chr12 118625162 118625348 -25657141 + L2 LINE L2 3120 3311 -2 2141 80 13 3 chr12 118625358 118625658 -25656831 + AluSx SINE Alu 1 303 -9 271 244 219 59 chr12 118626610 118626649 -25655840 + L2 LINE L2 3000 3031 -282 2131 62 69 0 chr12 118626649 118626939 -25655550 + AluSx SINE Alu 1 310 -2 271 244 219 59 chr12 118626939 118627169 -25655320 + L2 LINE L2 3031 3312 -1 767 221 87 15 chr12 118627205 118627400 -25655089 + MIR SINE MIR 35 243 -19 205 294 137 29 chr12 118627687 118627789 -25654700 + L2 LINE L2 3160 3272 0 2123 114 0 3 chr12 118628223 118628520 -25653969 - AluSx SINE Alu -16 296 1 28 0 0 0 chr12 118629479 118629507 -25652982 + AT_rich Low_complexity Low_complexity 1 28 0 240 43 0 64 chr12 118630461 118630508 -25651981 - AluSx SINE Alu 0 303 260 1574 93 9 0 chr12 118630509 118630723 -25651766 - AluSx SINE Alu -90 222 7 1558 169 19 33 chr12 118630734 118630904 -25651585 - AluJb SINE Alu -9 303 132 2128 101 0 7 chr12 118630904 118631201 -25651288 - AluSq SINE Alu -18 295 1 2096 106 3 17 chr12 118631204 118631505 -25650984 - AluSx SINE Alu -15 297 1 1558 169 19 33 chr12 118631505 118631637 -25650852 - AluJb SINE Alu -182 130 1 2130 117 3 0 chr12 118632125 118632432 -25650057 + AluSq SINE Alu 1 308 -5 24 0 0 0 chr12 118632459 118632483 -25650006 + AT_rich Low_complexity Low_complexity 1 24 0 1723 167 0 30 chr12 118632769 118633074 -25649415 - AluJo SINE Alu -15 297 2 1891 97 3 41 chr12 118633273 118633563 -25648926 + AluSx SINE Alu 33 311 -1 1845 112 51 7 chr12 118633923 118634199 -25648290 + AluSx SINE Alu 1 288 -24 186 43 0 0 chr12 118634202 118634225 -25648264 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 796 160 0 16 chr12 118634275 118634400 -25648089 + FLAM_C SINE Alu 2 124 -19 334 255 11 11 chr12 118634413 118634507 -25647982 + L1ME3A LINE L1 6070 6163 -7 1996 137 7 0 chr12 118634577 118634884 -25647605 + AluSq SINE Alu 1 309 -4 389 273 236 65 chr12 118634906 118635309 -25647180 + L2 LINE L2 2807 3288 -25 2434 78 0 0 chr12 118635309 118635617 -25646872 - AluY SINE Alu -3 308 1 389 273 236 65 chr12 118635617 118635641 -25646848 + L2 LINE L2 3288 3307 -6 749 255 119 56 chr12 118636082 118636509 -25645980 + L1MC4a LINE L1 5742 6195 -1613 208 292 0 0 chr12 118636531 118636579 -25645910 + MIR SINE MIR 87 134 -74 886 114 38 0 chr12 118636631 118636762 -25645727 + AluSx SINE Alu 1 136 -176 1960 114 4 0 chr12 118636762 118637042 -25645447 + AluSg SINE Alu 1 281 -29 1053 144 12 0 chr12 118637515 118637688 -25644801 + AluSx SINE Alu 119 293 -17 1704 168 0 3 chr12 118637925 118638216 -25644273 - AluJb SINE Alu -18 294 5 230 243 40 14 chr12 118638220 118638294 -25644195 + MLT1K LTR MaLR 513 588 0 353 339 16 0 chr12 118638494 118638621 -25643868 + L2 LINE L2 2458 2586 -728 1164 127 0 0 chr12 118638666 118638832 -25643657 - AluSp SINE Alu -14 299 134 2405 60 0 0 chr12 118638832 118639133 -25643356 - AluY SINE Alu -10 301 1 512 255 124 89 chr12 118639143 118639215 -25643274 + L2 LINE L2 2642 2710 -603 1508 144 17 121 chr12 118639215 118639563 -25642926 + AluJb SINE Alu 1 312 0 1637 119 52 93 chr12 118639565 118639875 -25642614 + AluJb SINE Alu 1 297 -15 512 255 124 89 chr12 118639875 118640081 -25642408 + L2 LINE L2 2710 2907 -406 818 161 8 0 chr12 118640081 118640211 -25642278 - FLAM_A SINE Alu -2 131 1 512 255 124 89 chr12 118640211 118640538 -25641951 + L2 LINE L2 2907 3313 0 654 59 0 0 chr12 118640664 118640749 -25641740 - Alu SINE Alu -6 304 220 2419 83 0 7 chr12 118640669 118640970 -25641519 - AluSg SINE Alu -11 299 1 266 236 164 9 chr12 118641663 118641773 -25640716 - L2 LINE L2 -245 3068 2942 2322 101 0 3 chr12 118641872 118642169 -25640320 + AluSx SINE Alu 1 296 -16 229 250 119 60 chr12 118642205 118642289 -25640200 + L2 LINE L2 3169 3257 -15 318 264 0 55 chr12 118642310 118642420 -25640069 + L2 LINE L2 3195 3298 -15 242 188 0 0 chr12 118642518 118642566 -25639923 + L2 LINE L2 2926 2973 -299 1880 142 21 0 chr12 118642585 118642873 -25639616 - AluJb SINE Alu -18 294 1 1798 168 14 3 chr12 118643070 118643367 -25639122 - AluJb SINE Alu -12 300 1 771 270 87 40 chr12 118643451 118643821 -25638668 + MER113 DNA MER1_type? 132 518 -3 296 191 106 43 chr12 118643911 118644005 -25638484 + MIR SINE MIR 93 192 -70 2261 96 3 13 chr12 118645573 118645886 -25636603 - AluSx SINE Alu -2 310 1 2082 60 0 0 chr12 118646175 118646424 -25636065 - AluY SINE Alu -11 300 52 1510 87 0 10 chr12 118646553 118646749 -25635740 - AluSg/x SINE Alu -10 302 109 285 161 36 0 chr12 118646766 118646822 -25635667 - MIR SINE MIR -99 163 106 226 320 164 8 chr12 118647042 118647164 -25635325 - MIR3 SINE MIR -10 198 58 2218 78 24 10 chr12 118647170 118647464 -25635025 - AluSc SINE Alu -10 299 2 558 250 38 25 chr12 118647486 118647646 -25634843 - L1ME1 LINE L1 -5 6161 6000 469 265 122 5 chr12 118647648 118647837 -25634652 - L2 LINE L2 -552 2762 2552 2220 118 3 0 chr12 118648032 118648337 -25634152 + AluSx SINE Alu 6 311 -1 824 164 113 0 chr12 118648497 118648656 -25633833 + AluJo SINE Alu 126 302 -10 2118 129 30 0 chr12 118648780 118649082 -25633407 + AluSx SINE Alu 1 311 -1 2401 101 0 0 chr12 118649282 118649589 -25632900 - AluSx SINE Alu -5 307 1 219 204 20 0 chr12 118650159 118650208 -25632281 + (TA)n Simple_repeat Simple_repeat 2 51 0 2461 93 0 6 chr12 118650485 118650797 -25631692 + AluSx SINE Alu 1 310 -2 2213 77 34 14 chr12 118650798 118651095 -25631394 + AluSp SINE Alu 2 304 -9 2198 95 14 0 chr12 118651332 118651615 -25630874 - AluSx SINE Alu -25 287 1 845 183 0 0 chr12 118651646 118651788 -25630701 - AluJb SINE Alu -9 303 162 1741 142 8 4 chr12 118651848 118652115 -25630374 - AluJo SINE Alu -44 268 1 391 223 187 0 chr12 118652139 118652278 -25630211 - L1MC4 LINE L1 -246 7796 7632 2317 72 0 30 chr12 118652281 118652585 -25629904 - AluY SINE Alu -16 295 1 2215 118 3 13 chr12 118652590 118652904 -25629585 - AluSx SINE Alu -1 311 1 975 178 6 0 chr12 118652940 118653097 -25629392 - AluJb SINE Alu -18 294 137 2658 187 67 42 chr12 118653098 118653424 -25629065 - L1MC4 LINE L1 -491 7551 7235 2259 70 0 14 chr12 118653424 118653733 -25628756 - AluY SINE Alu 0 305 1 2658 187 67 42 chr12 118653733 118653788 -25628701 - L1MC4 LINE L1 -807 7235 7183 2486 68 0 0 chr12 118653788 118654084 -25628405 - AluY SINE Alu -15 296 1 2658 187 67 42 chr12 118654084 118654416 -25628073 - L1MC4 LINE L1 -859 7183 6818 1172 212 92 27 chr12 118654416 118654952 -25627537 + MLT1E2 LTR MaLR 1 626 0 2268 33 92 4 chr12 118654984 118655256 -25627233 + AluY SINE Alu 1 296 -15 1038 204 44 124 chr12 118655268 118655634 -25626855 - L1MC4a LINE L1 -1088 6720 6399 2349 97 0 13 chr12 118655634 118655945 -25626544 + AluSc SINE Alu 1 307 -2 1038 204 44 124 chr12 118655945 118656053 -25626436 - L1MC4a LINE L1 -1409 6399 6284 1142 91 0 59 chr12 118656058 118656105 -25626384 - L1MB3 LINE L1 -4 6179 6131 1953 103 68 7 chr12 118656105 118656271 -25626218 - AluSq SINE Alu -15 298 107 2546 65 3 3 chr12 118656271 118656580 -25625909 - AluY SINE Alu -2 309 1 1953 103 68 7 chr12 118656580 118656694 -25625795 - AluSq SINE Alu -206 107 1 1142 91 0 59 chr12 118656694 118656832 -25625657 - L1MB3 LINE L1 -52 6131 6005 714 137 7 98 chr12 118656836 118656989 -25625500 + FLAM_C SINE Alu 5 143 0 2270 154 30 21 chr12 118656990 118657425 -25625064 - L1MB3 LINE L1 -168 6015 5577 1768 120 13 70 chr12 118657426 118657742 -25624747 - AluSx SINE Alu -14 298 1 2237 93 21 7 chr12 118658164 118658453 -25624036 - AluSx SINE Alu -17 295 3 958 212 44 54 chr12 118658484 118658591 -25623898 + L1ME2 LINE L1 5705 5812 -352 2526 61 0 0 chr12 118658591 118658887 -25623602 + AluY SINE Alu 1 296 -15 958 212 44 54 chr12 118658887 118659095 -25623394 + L1ME2 LINE L1 5812 6017 -147 2369 60 3 23 chr12 118659121 118659421 -25623068 + AluY SINE Alu 1 294 -17 2080 133 26 0 chr12 118659620 118659922 -25622567 + AluSx SINE Alu 2 311 -1 993 130 25 31 chr12 118660046 118660208 -25622281 + FRAM SINE Alu 1 161 -5 2579 62 3 0 chr12 118660224 118660533 -25621956 + AluY SINE Alu 1 310 -1 30 27 0 0 chr12 118660665 118660702 -25621787 + AT_rich Low_complexity Low_complexity 1 37 0 1301 132 218 0 chr12 118660834 118661077 -25621412 - AluJb SINE Alu -16 296 1 1232 186 126 30 chr12 118662839 118663108 -25619381 - AluJo SINE Alu -17 295 1 2391 81 3 3 chr12 118663216 118663512 -25618977 - AluSp SINE Alu -17 296 1 2387 99 0 3 chr12 118664205 118664518 -25617971 + AluSx SINE Alu 1 312 0 1463 90 70 16 chr12 118664742 118664986 -25617503 - Tigger7 DNA MER2_type -1 2486 2230 2015 90 4 0 chr12 118665300 118665556 -25616933 + AluSx SINE Alu 1 257 -55 2271 87 3 23 chr12 118666562 118666861 -25615628 + AluSg SINE Alu 1 293 -17 2020 115 11 0 chr12 118667145 118667454 -25615035 - AluSq SINE Alu 0 312 1 21 36 0 0 chr12 118667658 118667686 -25614803 + AT_rich Low_complexity Low_complexity 1 28 0 2289 115 0 0 chr12 118668365 118668660 -25613829 + AluSx SINE Alu 1 295 -17 418 0 35 17 chr12 118668665 118668723 -25613766 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 1610 183 15 7 chr12 118668723 118668997 -25613492 - AluJb SINE Alu -36 276 1 2214 105 3 7 chr12 118669440 118669735 -25612754 - AluSq SINE Alu -15 298 5 497 212 82 7 chr12 118670000 118670146 -25612343 - MIR SINE MIR 0 262 106 2593 53 0 7 chr12 118670329 118670631 -25611858 - AluY SINE Alu -11 300 1 296 294 183 8 chr12 118670673 118670799 -25611690 - MIR3 SINE MIR -10 198 51 2314 96 0 3 chr12 118670804 118671097 -25611392 - AluY SINE Alu -19 292 1 646 241 23 22 chr12 118671115 118671293 -25611196 - L1ME1 LINE L1 0 6178 6001 529 233 122 11 chr12 118671293 118671482 -25611007 - L2 LINE L2 -553 2761 2552 2090 134 13 0 chr12 118671506 118671811 -25610678 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr12 118673258 118673280 -25609209 + AT_rich Low_complexity Low_complexity 1 22 0 2611 77 0 0 chr12 118673282 118673594 -25608895 - AluSx SINE Alu 0 312 1 2018 103 0 82 chr12 118673686 118674015 -25608474 + AluSx SINE Alu 1 302 -10 2276 116 0 0 chr12 118674048 118674349 -25608140 - AluSq SINE Alu -12 301 1 227 208 0 0 chr12 118675694 118675742 -25606747 + A-rich Low_complexity Low_complexity 1 48 0 339 192 0 0 chr12 118676850 118676923 -25605566 - LTR30 LTR ERV1 -98 624 552 2239 60 24 17 chr12 118676975 118677273 -25605216 + AluSx SINE Alu 1 300 -12 379 273 31 37 chr12 118678824 118678985 -25603504 + MIR SINE MIR 60 219 -43 2208 121 0 3 chr12 118679040 118679347 -25603142 + AluSx SINE Alu 1 306 -6 222 207 0 17 chr12 118679688 118679746 -25602743 - MIR SINE MIR -13 249 193 688 289 56 38 chr12 118680151 118680264 -25602225 + Charlie8 DNA MER1_type 3 112 -229 2337 87 0 29 chr12 118680264 118680576 -25601913 + AluSq SINE Alu 1 303 -10 688 289 56 38 chr12 118680576 118680728 -25601761 + Charlie8 DNA MER1_type 112 273 -68 1542 177 16 35 chr12 118680792 118681108 -25601381 + AluJo SINE Alu 1 310 -2 298 228 20 0 chr12 118681172 118681273 -25601216 + (TA)n Simple_repeat Simple_repeat 1 103 0 23 0 0 0 chr12 118681517 118681540 -25600949 + AT_rich Low_complexity Low_complexity 1 23 0 593 164 0 35 chr12 118681540 118681656 -25600833 - FLAM_C SINE Alu -25 118 7 2186 115 0 3 chr12 118681975 118682263 -25600226 - AluSx SINE Alu -25 287 1 2623 34 0 0 chr12 118682274 118682565 -25599924 - AluY SINE Alu -20 291 1 2152 93 31 14 chr12 118682921 118683212 -25599277 - AluSx SINE Alu -16 296 1 411 59 102 0 chr12 118683410 118683528 -25598961 + (TA)n Simple_repeat Simple_repeat 1 130 0 450 114 84 6 chr12 118683572 118683738 -25598751 + (TA)n Simple_repeat Simple_repeat 2 180 0 2142 119 3 0 chr12 118683741 118684027 -25598462 - AluSq SINE Alu -26 287 1 25 51 0 0 chr12 118684034 118684073 -25598416 + AT_rich Low_complexity Low_complexity 1 39 0 359 274 109 23 chr12 118684240 118684415 -25598074 + MIR SINE MIR 70 259 -3 270 221 80 97 chr12 118684583 118684696 -25597793 - MLT1K LTR MaLR -16 572 462 932 95 0 0 chr12 118684715 118684831 -25597658 - FLAM_C SINE Alu -19 124 9 1818 133 3 55 chr12 118684854 118685039 -25597450 - AluJb SINE Alu 0 308 143 2397 75 0 20 chr12 118685039 118685345 -25597144 - AluY SINE Alu -11 300 1 1818 133 3 55 chr12 118685345 118685478 -25597011 - AluJb SINE Alu -165 143 5 21 0 0 0 chr12 118685512 118685533 -25596956 + AT_rich Low_complexity Low_complexity 1 21 0 624 212 8 8 chr12 118685533 118685651 -25596838 - FLAM_C SINE Alu -15 118 1 741 176 14 7 chr12 118686086 118686228 -25596261 + L2 LINE L2 2671 2813 -501 289 303 25 8 chr12 118686280 118686399 -25596090 + L2 LINE L2 3149 3269 -44 662 267 63 37 chr12 118686401 118686684 -25595805 + MLT1H LTR MaLR 1 327 -222 271 240 40 0 chr12 118686708 118686783 -25595706 + MIR SINE MIR 156 233 -29 1242 188 9 0 chr12 118686834 118687058 -25595431 + AluJo SINE Alu 86 311 -1 198 103 0 0 chr12 118687073 118687102 -25595387 + (GAAAA)n Simple_repeat Simple_repeat 5 33 0 4577 105 19 32 chr12 118687247 118687926 -25594563 + L1MA4A LINE L1 5581 6267 -36 2371 78 3 3 chr12 118687926 118688222 -25594267 - AluSc SINE Alu -13 296 1 2208 132 0 7 chr12 118688222 118688526 -25593963 - AluSx SINE Alu -10 302 1 4577 105 19 32 chr12 118688526 118688571 -25593918 + L1MA4A LINE L1 6265 6297 -6 2232 88 0 10 chr12 118689048 118689345 -25593144 - AluY SINE Alu -17 294 1 1830 170 0 14 chr12 118689759 118690105 -25592384 - AluJb SINE Alu 0 342 1 450 36 0 0 chr12 118690105 118690161 -25592328 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 696 137 93 14 chr12 118690400 118690539 -25591950 + L1M4 LINE L1 5281 5430 -748 256 144 16 12 chr12 118690541 118690604 -25591885 + L1MB7 LINE L1 6120 6184 0 2271 97 13 7 chr12 118691456 118691756 -25590733 + AluSx SINE Alu 1 302 -10 571 156 0 41 chr12 118691915 118692037 -25590452 - MIR SINE MIR -32 230 114 1539 173 28 0 chr12 118692063 118692317 -25590172 + AluJb SINE Alu 35 295 -17 26 39 0 20 chr12 118692588 118692607 -25589882 + AT_rich Low_complexity Low_complexity 1 19 -31 2167 88 3 14 chr12 118692607 118692892 -25589597 + AluSc SINE Alu 1 282 -27 26 39 0 20 chr12 118692892 118692923 -25589566 + AT_rich Low_complexity Low_complexity 19 50 0 284 182 197 53 chr12 118692936 118693068 -25589421 - L1ME4a LINE L1 -2 6119 5969 1670 163 32 3 chr12 118693132 118693414 -25589075 + AluJo SINE Alu 1 290 -22 2141 127 3 0 chr12 118693420 118693720 -25588769 + AluSx SINE Alu 1 301 -11 351 0 0 0 chr12 118693829 118693868 -25588621 + (CA)n Simple_repeat Simple_repeat 2 40 0 2520 63 0 10 chr12 118693984 118694286 -25588203 + AluY SINE Alu 1 299 -12 1035 148 7 0 chr12 118694305 118694460 -25588029 + AluJb SINE Alu 147 302 -10 2303 107 0 0 chr12 118695181 118695481 -25587008 - AluSx SINE Alu -12 300 1 1899 101 0 20 chr12 118695487 118695773 -25586716 - AluSp SINE Alu 0 321 41 243 61 0 0 chr12 118696268 118696301 -25586188 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1785 150 0 18 chr12 118696303 118696589 -25585900 - AluJb SINE Alu -31 281 1 2296 112 0 13 chr12 118696693 118697026 -25585463 - AluSg SINE Alu 0 329 1 735 205 104 81 chr12 118697074 118697246 -25585243 - L1ME4a LINE L1 -11 6110 5943 1869 158 14 3 chr12 118697246 118697531 -25584958 - AluJb SINE Alu -24 288 1 735 205 104 81 chr12 118697531 118697630 -25584859 - L1ME4a LINE L1 -178 5943 5827 2277 96 0 7 chr12 118697630 118697933 -25584556 - AluSg1 SINE Alu -8 301 1 735 205 104 81 chr12 118697933 118698007 -25584482 - L1ME4a LINE L1 -294 5827 5756 1621 173 31 7 chr12 118699231 118699520 -25582969 + AluJo SINE Alu 1 296 -16 566 276 149 13 chr12 118700130 118700358 -25582131 + MIR SINE MIR 1 259 -3 2373 82 0 3 chr12 118700358 118700652 -25581837 + AluSg SINE Alu 1 293 -17 1160 90 7 0 chr12 118700698 118700843 -25581646 + AluSc SINE Alu 1 146 -163 689 137 0 0 chr12 118700843 118700938 -25581551 - AluS SINE Alu -216 96 2 2097 115 13 16 chr12 118701055 118701368 -25581121 - AluSq SINE Alu -1 312 1 1107 83 0 0 chr12 118701370 118701503 -25580986 - AluSq/x SINE Alu -180 133 1 1052 209 31 15 chr12 118701524 118701783 -25580706 - L1MC4 LINE L1 -501 7541 7279 2180 106 0 3 chr12 118701783 118702067 -25580422 - AluSg SINE Alu -27 283 1 1049 96 7 14 chr12 118702067 118702213 -25580276 - AluSq/x SINE Alu -168 145 1 2533 82 0 0 chr12 118702705 118703011 -25579478 + AluY SINE Alu 1 306 -5 1807 209 78 35 chr12 118703038 118703522 -25578967 - MLT1D LTR MaLR 0 505 1 241 240 133 0 chr12 118703661 118703736 -25578753 - L2 LINE L2 -14 3299 3215 279 261 139 44 chr12 118703894 118704487 -25578002 - L2 LINE L2 -257 3056 2338 375 305 16 0 chr12 118704487 118704615 -25577874 + MER20 DNA MER1_type 88 217 -2 2175 112 10 3 chr12 118704801 118705105 -25577384 - AluSx SINE Alu -6 306 1 243 242 182 45 chr12 118705118 118705226 -25577263 - L2 LINE L2 -1477 1837 1707 2277 84 14 3 chr12 118705226 118705522 -25576967 - AluSq SINE Alu -14 299 1 243 242 182 45 chr12 118705522 118705545 -25576944 - L2 LINE L2 -1607 1707 1688 1399 225 25 0 chr12 118705546 118705830 -25576659 + AluJo SINE Alu 1 291 -11 2429 68 3 16 chr12 118706115 118706422 -25576067 - AluY SINE Alu -8 303 1 2032 122 7 3 chr12 118707283 118707569 -25574920 - AluSx SINE Alu -25 287 1 910 119 67 0 chr12 118708501 118708635 -25573854 + AluJb SINE Alu 1 143 -169 1542 145 77 86 chr12 118708679 118709030 -25573459 + MER7A DNA MER2_type 1 346 0 247 207 86 25 chr12 118714781 118714874 -25567615 + MIR SINE MIR 79 185 -23 790 248 80 27 chr12 118714890 118715152 -25567337 + L2 LINE L2 3010 3285 -28 182 273 50 41 chr12 118715215 118715336 -25567153 - MIR SINE MIR -75 187 66 1720 103 16 109 chr12 118716399 118716720 -25565769 - AluY SINE Alu -11 300 10 2468 68 0 0 chr12 118716857 118717152 -25565337 - AluY SINE Alu -16 295 1 2258 103 3 26 chr12 118717178 118717490 -25564999 + AluSx SINE Alu 2 306 -6 2231 94 30 3 chr12 118717504 118717802 -25564687 + AluSq SINE Alu 2 307 -6 2106 139 0 13 chr12 118717941 118718251 -25564238 + AluSx SINE Alu 1 306 -6 2195 105 10 16 chr12 118718467 118718781 -25563708 + AluSx SINE Alu 1 312 0 2328 77 11 0 chr12 118720631 118720917 -25561572 + AluSq SINE Alu 1 289 -24 488 206 131 0 chr12 118721041 118721148 -25561341 - FLAM_A SINE Alu -9 124 4 2395 99 0 0 chr12 118721166 118721470 -25561019 - AluSx SINE Alu -8 304 1 735 244 135 21 chr12 118722886 118723312 -25559177 + L1ME LINE L1 5315 5799 -322 855 211 22 40 chr12 118723316 118723539 -25558950 + MIR SINE MIR 1 219 -43 230 186 0 43 chr12 118723663 118723733 -25558756 + L1MC4 LINE L1 6129 6195 -1847 245 231 66 44 chr12 118723806 118723897 -25558592 + MIR SINE MIR 54 146 -116 2114 125 0 7 chr12 118723903 118724198 -25558291 + AluSx SINE Alu 4 296 -16 27 62 0 0 chr12 118725690 118725738 -25556751 + AT_rich Low_complexity Low_complexity 1 48 0 276 230 92 0 chr12 118725959 118726046 -25556443 - MIR SINE MIR -60 148 54 2462 88 0 0 chr12 118726301 118726607 -25555882 - AluY SINE Alu -5 306 1 548 244 98 43 chr12 118727163 118727397 -25555092 - L1ME LINE L1 -390 5780 5534 2388 86 0 3 chr12 118727422 118727723 -25554766 - AluSp SINE Alu -12 301 2 747 274 185 21 chr12 118728175 118728500 -25553989 + Tigger8 DNA MER2_type 35 412 -254 683 151 34 204 chr12 118728561 118728660 -25553829 + MER33 DNA MER1_type 3 117 -2507 2301 71 0 0 chr12 118728660 118728964 -25553525 + AluY SINE Alu 1 304 0 683 151 34 204 chr12 118728964 118729013 -25553476 + MER33 DNA MER1_type 117 173 -2451 1845 110 0 4 chr12 118729013 118729259 -25553230 + AluSq SINE Alu 37 281 -32 1970 76 23 8 chr12 118729259 118729521 -25552968 - AluSc SINE Alu -41 268 1 683 151 34 204 chr12 118729521 118729574 -25552915 + MER33 DNA MER1_type 172 232 -2392 1768 191 0 0 chr12 118729574 118729878 -25552611 + AluJb SINE Alu 1 304 -8 683 151 34 204 chr12 118729878 118729946 -25552543 + MER33 DNA MER1_type 232 310 -2314 1949 127 32 11 chr12 118729946 118730230 -25552259 - AluSx SINE Alu -22 290 1 683 151 34 204 chr12 118730230 118730263 -25552226 + MER33 DNA MER1_type 310 268 -2356 1691 191 0 17 chr12 118730263 118730556 -25551933 - AluJo SINE Alu -24 288 1 683 151 34 204 chr12 118730556 118730639 -25551850 + MER33 DNA MER1_type 267 362 -1 479 222 99 37 chr12 118731401 118731563 -25550926 + L1MC5 LINE L1 7742 7913 -48 647 203 13 44 chr12 118733199 118733357 -25549132 + MER33 DNA MER1_type 1 153 -171 1645 172 17 20 chr12 118733358 118733655 -25548834 - AluJo SINE Alu -16 296 1 565 130 65 9 chr12 118733655 118733763 -25548726 - Tigger7 DNA MER2_type -121 2366 2253 1905 112 48 18 chr12 118733786 118734113 -25548376 - THE1C LTR MaLR 0 375 1 2073 89 67 3 chr12 118734699 118734981 -25547508 - AluSg SINE Alu -8 302 3 1777 177 7 20 chr12 118735100 118735405 -25547084 - AluJo SINE Alu -9 303 3 1752 167 16 43 chr12 118735490 118735521 -25546968 - AluJo SINE Alu -15 297 267 2392 109 0 0 chr12 118735521 118735832 -25546657 + AluSx SINE Alu 1 311 -1 1752 167 16 43 chr12 118735832 118736105 -25546384 - AluJo SINE Alu -45 267 1 1889 157 3 10 chr12 118736195 118736500 -25545989 + AluJo SINE Alu 1 303 -9 2066 125 0 31 chr12 118737380 118737701 -25544788 - AluSx SINE Alu -1 311 1 1610 149 62 21 chr12 118737756 118738044 -25544445 + AluJb SINE Alu 5 304 -8 365 208 52 21 chr12 118738101 118738161 -25544328 + FRAM SINE Alu 54 120 -182 1457 129 0 21 chr12 118738161 118738394 -25544095 + AluSg/x SINE Alu 85 312 0 365 208 52 21 chr12 118738394 118738429 -25544060 + FRAM SINE Alu 120 152 -14 2051 158 3 0 chr12 118738589 118738900 -25543589 + AluSx SINE Alu 1 312 0 2312 106 10 13 chr12 118738917 118739229 -25543260 + AluSx SINE Alu 1 311 -1 2226 108 7 0 chr12 118739412 118739707 -25542782 + AluSq SINE Alu 1 297 -16 303 221 21 42 chr12 118740824 118740919 -25541570 + L1MC4 LINE L1 6611 6703 -1339 192 152 0 0 chr12 118740919 118740952 -25541537 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 2021 125 31 3 chr12 118740957 118741244 -25541245 - AluSq SINE Alu -18 295 1 2367 82 0 3 chr12 118741329 118741632 -25540857 - AluSg1 SINE Alu -7 302 1 408 312 122 38 chr12 118742441 118742678 -25539811 + MIR SINE MIR 2 258 -4 195 289 0 0 chr12 118743288 118743333 -25539156 - MER5B DNA MER1_type 0 178 134 2554 37 0 0 chr12 118744331 118744629 -25537860 - AluY SINE Alu -13 298 1 215 295 115 0 chr12 118744656 118744717 -25537772 + L2 LINE L2 3129 3196 -76 854 198 0 31 chr12 118744946 118745108 -25537381 + FAM SINE Alu 1 157 -18 2188 109 0 0 chr12 118745128 118745439 -25537050 + AluSx SINE Alu 1 311 -1 450 276 58 58 chr12 118745454 118745628 -25536861 + MIR3 SINE MIR 6 179 -29 180 0 0 0 chr12 118746074 118746094 -25536395 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7872 60 1 0 chr12 118746115 118747080 -25535409 + LTR5 LTR ERVK 1 966 -3 4565 18 2 0 chr12 118747083 118747598 -25534891 + HERVK LTR ERVK 1 516 -6727 687 150 16 31 chr12 118747681 118747808 -25534681 + Tigger7 DNA MER2_type 2322 2446 -45 2052 114 10 16 chr12 118748236 118748544 -25533945 + AluSg SINE Alu 1 306 -4 2109 95 3 0 chr12 118748947 118749257 -25533232 - AluSx SINE Alu 0 311 1 815 209 107 0 chr12 118749270 118749476 -25533013 + L1ME LINE L1 5586 5813 -308 2253 75 3 0 chr12 118749777 118750083 -25532406 + AluSp SINE Alu 1 307 0 808 147 7 60 chr12 118750095 118750245 -25532244 + FLAM_C SINE Alu 2 143 0 188 271 115 31 chr12 118750366 118750462 -25532027 + MIR SINE MIR 138 241 -21 1792 128 0 40 chr12 118750870 118751168 -25531321 - AluSx SINE Alu -26 286 1 252 0 0 0 chr12 118751685 118751713 -25530776 + (A)n Simple_repeat Simple_repeat 1 28 0 2722 166 76 3 chr12 118752366 118752934 -25529555 + L1MB7 LINE L1 5550 6158 -26 2295 89 7 0 chr12 118752963 118753266 -25529223 + AluSq SINE Alu 1 305 -8 284 109 0 73 chr12 118753333 118753388 -25529101 + L1PA8 LINE L1 6121 6171 -1 232 280 115 32 chr12 118753404 118753561 -25528928 - MARNA DNA Mariner -356 230 61 494 267 29 78 chr12 118754085 118754291 -25528198 + MIR3 SINE MIR 8 203 -5 1934 130 0 10 chr12 118754941 118755240 -25527249 + AluSx SINE Alu 1 296 -16 2158 89 0 43 chr12 118755808 118756133 -25526356 + AluSq SINE Alu 1 311 -2 216 258 97 97 chr12 118756150 118756305 -25526184 - MIR3 SINE MIR -20 188 34 2213 93 0 3 chr12 118756416 118756717 -25525772 - AluSx SINE Alu -12 300 1 2132 113 0 0 chr12 118756825 118757127 -25525362 - AluSg SINE Alu -8 302 1 1988 91 0 25 chr12 118757217 118757502 -25524987 + AluSg SINE Alu 14 291 -19 336 214 270 8 chr12 118758642 118758768 -25523721 + MIR SINE MIR 84 242 -20 180 0 0 0 chr12 118759012 118759032 -25523457 + (CCG)n Simple_repeat Simple_repeat 1 20 0 25 51 0 0 chr12 118759109 118759148 -25523341 + GC_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 118759357 118759378 -25523111 + GC_rich Low_complexity Low_complexity 1 21 0 195 206 0 111 chr12 118759974 118760037 -25522452 + L2 LINE L2 2911 2966 -347 192 40 0 0 chr12 118760110 118760135 -25522354 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 315 328 95 9 chr12 118760137 118760253 -25522236 + L2 LINE L2 3187 3312 -1 1941 104 35 14 chr12 118760262 118760551 -25521938 + AluSx SINE Alu 1 295 -17 1296 111 22 49 chr12 118762045 118762270 -25520219 - MER20 DNA MER1_type 0 219 1 180 256 0 0 chr12 118762298 118762341 -25520148 - MIR SINE MIR -10 252 210 1916 139 0 7 chr12 118762425 118762726 -25519763 + AluSx SINE Alu 1 299 -13 2192 95 0 3 chr12 118762990 118763284 -25519205 + AluSx SINE Alu 1 293 -19 535 223 230 0 chr12 118763298 118763437 -25519052 + FAM SINE Alu 1 171 -4 1759 119 0 53 chr12 118763447 118763708 -25518781 + L1MB7 LINE L1 5880 6124 -60 1718 164 3 20 chr12 118763708 118763843 -25518646 + AluJb SINE Alu 1 137 -175 1917 92 0 15 chr12 118763843 118764114 -25518375 + AluSc SINE Alu 22 288 -21 1718 164 3 20 chr12 118764114 118764271 -25518218 + AluJb SINE Alu 137 288 -24 1759 119 0 53 chr12 118764271 118764311 -25518178 + L1MB7 LINE L1 6124 6165 -19 2158 114 3 0 chr12 118764327 118764626 -25517863 + AluSx SINE Alu 2 301 -11 216 214 0 0 chr12 118764718 118764760 -25517729 + (TAA)n Simple_repeat Simple_repeat 2 43 0 2073 126 0 7 chr12 118764812 118765113 -25517376 - AluSx SINE Alu -13 299 1 2052 103 3 17 chr12 118765134 118765434 -25517055 - AluSc SINE Alu -13 296 1 478 241 107 64 chr12 118765471 118765586 -25516903 + L2 LINE L2 3116 3243 -70 1530 179 13 39 chr12 118765586 118765894 -25516595 + AluJb SINE Alu 1 300 -12 478 241 107 64 chr12 118765894 118765965 -25516524 + L2 LINE L2 3243 3310 -3 1559 278 72 41 chr12 118766181 118766510 -25515979 + MLT1K LTR MaLR 14 368 -220 1975 137 3 13 chr12 118766510 118766825 -25515664 - AluSx SINE Alu 0 312 1 1559 278 72 41 chr12 118766825 118767053 -25515436 + MLT1K LTR MaLR 368 588 0 1763 135 3 38 chr12 118768281 118768600 -25513889 - AluJb SINE Alu -4 308 1 1551 126 169 8 chr12 118768614 118768868 -25513621 - AluSg SINE Alu -5 295 1 1816 124 17 17 chr12 118768895 118769222 -25513267 + AluSx SINE Alu 1 312 0 877 129 0 29 chr12 118769313 118769452 -25513037 - FRAM SINE Alu -21 155 21 408 40 0 0 chr12 118769543 118769593 -25512896 + (TA)n Simple_repeat Simple_repeat 2 51 0 2175 73 52 0 chr12 118769593 118769881 -25512608 - AluSp SINE Alu -10 303 1 1434 158 3 84 chr12 118769981 118770134 -25512355 - AluJb SINE Alu -26 286 169 1484 90 5 0 chr12 118770134 118770335 -25512154 - AluY SINE Alu -17 294 93 1434 158 3 84 chr12 118770335 118770492 -25511997 - AluJb SINE Alu -143 169 1 419 259 156 62 chr12 118770492 118770557 -25511932 + L1M4 LINE L1 4890 4947 -1199 1843 164 7 0 chr12 118770557 118770850 -25511639 + AluSx SINE Alu 1 295 -17 419 259 156 62 chr12 118770850 118771027 -25511462 + L1M4 LINE L1 4947 5155 -991 1707 129 108 0 chr12 118771037 118771316 -25511173 + AluJb SINE Alu 1 309 -3 1159 210 30 7 chr12 118771320 118771591 -25510898 + L1MB3 LINE L1 4989 5265 -881 1633 179 0 3 chr12 118771596 118771897 -25510592 + AluJo SINE Alu 13 312 0 2176 91 13 0 chr12 118771915 118772222 -25510267 + AluSp SINE Alu 1 311 -2 1277 112 16 0 chr12 118772224 118772412 -25510077 + L1MB3 LINE L1 5483 5673 -510 1740 143 11 4 chr12 118772413 118772693 -25509796 + AluSx SINE Alu 1 282 -30 2198 138 8 90 chr12 118772722 118772849 -25509640 + L1MB3 LINE L1 5672 5808 -375 2295 84 0 0 chr12 118772849 118773145 -25509344 - AluY SINE Alu -15 296 1 2198 138 8 90 chr12 118773145 118773169 -25509320 + L1MB3 LINE L1 5808 5832 -351 2245 79 3 0 chr12 118773169 118773461 -25509028 - AluSc SINE Alu -16 293 1 2198 138 8 90 chr12 118773461 118773493 -25508996 + L1MB3 LINE L1 5832 5865 -318 1379 217 20 20 chr12 118773493 118773793 -25508696 + AluJo SINE Alu 5 304 -8 1981 132 30 0 chr12 118773798 118774101 -25508388 + AluSx SINE Alu 1 312 0 2198 138 8 90 chr12 118774101 118774467 -25508022 + L1MB3 LINE L1 5869 6179 -4 2044 106 7 17 chr12 118774469 118774770 -25507719 - AluSx SINE Alu -14 298 1 2155 118 0 0 chr12 118774883 118775188 -25507301 + AluSq SINE Alu 1 305 -8 577 192 118 96 chr12 118775189 118775216 -25507273 - LTR37B LTR ERV1 -31 437 412 1819 165 3 0 chr12 118775216 118775525 -25506964 + AluJb SINE Alu 1 310 -2 577 192 118 96 chr12 118775525 118775740 -25506749 - LTR37B LTR ERV1 -56 412 184 1725 120 70 33 chr12 118775740 118776041 -25506448 + AluSx SINE Alu 1 312 0 577 192 118 96 chr12 118776041 118776120 -25506369 - LTR37B LTR ERV1 -284 184 108 766 108 77 39 chr12 118776168 118776298 -25506191 - AluJo SINE Alu -176 136 2 698 173 27 119 chr12 118776301 118776486 -25506003 + MER58B DNA MER1_type 174 341 0 531 213 8 25 chr12 118776486 118776602 -25505887 - LTR37B LTR ERV1 -352 116 3 2310 159 80 27 chr12 118776739 118777055 -25505434 - LTR24 LTR ERV1 0 467 169 2024 113 7 0 chr12 118777055 118777348 -25505141 - AluSg SINE Alu -8 302 8 1903 107 15 0 chr12 118777348 118777609 -25504880 - AluSq SINE Alu -48 265 1 2310 159 80 27 chr12 118777609 118777731 -25504758 - LTR24 LTR ERV1 -297 170 5 2031 129 3 0 chr12 118777748 118778058 -25504431 + AluSx SINE Alu 1 311 -1 343 202 154 39 chr12 118778279 118778383 -25504106 + L2 LINE L2 3152 3267 -5 2247 93 0 0 chr12 118778653 118778955 -25503534 - AluY SINE Alu -7 304 3 1138 152 20 20 chr12 118778979 118779176 -25503313 - AluJo SINE Alu -30 282 86 561 231 85 8 chr12 118779254 118779384 -25503105 - MIR SINE MIR -101 161 22 2013 108 6 38 chr12 118779411 118779727 -25502762 - AluSx SINE Alu -6 306 1 2069 128 0 7 chr12 118779736 118780041 -25502448 - AluSx SINE Alu -9 303 1 587 139 79 0 chr12 118780041 118780142 -25502347 - L1MC1 LINE L1 -8 6325 6217 838 265 132 53 chr12 118780218 118780727 -25501762 + HAL1 LINE L1 12 560 -1947 2066 120 0 0 chr12 118780727 118781018 -25501471 + AluSx SINE Alu 1 291 -21 228 189 0 19 chr12 118781072 118781125 -25501364 + (TTA)n Simple_repeat Simple_repeat 2 53 0 2161 107 0 22 chr12 118781206 118781525 -25500964 + AluSx SINE Alu 1 312 0 2303 85 3 0 chr12 118781529 118781834 -25500655 + AluSq SINE Alu 1 306 -7 2138 103 3 10 chr12 118782138 118782448 -25500041 - AluSg SINE Alu -2 308 1 1047 228 122 32 chr12 118782463 118782841 -25499648 + L1ME1 LINE L1 5414 5825 -341 2350 91 3 0 chr12 118782843 118783150 -25499339 + AluSp SINE Alu 1 308 -5 906 104 8 0 chr12 118783157 118783282 -25499207 + AluJ SINE Alu 1 126 -186 2322 203 31 5 chr12 118783292 118784042 -25498447 + L1M3 LINE L1 4807 5575 -608 717 193 15 7 chr12 118784042 118784177 -25498312 - AluJo SINE Alu -172 140 5 315 194 0 15 chr12 118784179 118784246 -25498243 + L1ME1 LINE L1 6045 6110 -56 2129 119 3 10 chr12 118784247 118784559 -25497930 + AluSq SINE Alu 1 310 -3 987 160 5 32 chr12 118784564 118784752 -25497737 + AluJ SINE Alu 130 312 0 2084 115 6 3 chr12 118784975 118785287 -25497202 - AluSq SINE Alu 0 313 1 2013 127 3 13 chr12 118785406 118785722 -25496767 + AluSq SINE Alu 1 313 0 2189 104 3 0 chr12 118785914 118786221 -25496268 + AluSg SINE Alu 1 308 -2 968 166 0 6 chr12 118786498 118786661 -25495828 - AluJb SINE Alu -20 292 131 222 274 0 0 chr12 118787349 118787400 -25495089 - L3b LINE CR1 -1 1582 1532 2171 106 0 0 chr12 118787424 118787717 -25494772 + AluSx SINE Alu 5 297 -15 2270 88 0 0 chr12 118787911 118788205 -25494284 - AluSc SINE Alu -15 294 1 1492 129 58 4 chr12 118788518 118788758 -25493731 - AluJb SINE Alu -59 253 1 882 118 0 0 chr12 118789004 118789131 -25493358 + FLAM_C SINE Alu 1 127 -16 1629 127 3 82 chr12 118789396 118789711 -25492778 + AluJb SINE Alu 1 290 -22 211 296 14 14 chr12 118789717 118789788 -25492701 - MER5A DNA MER1_type -51 138 68 1061 105 0 0 chr12 118789790 118789943 -25492546 - AluJb SINE Alu -2 310 158 448 293 95 0 chr12 118790554 118790701 -25491788 - MIR SINE MIR 0 262 102 1655 109 87 0 chr12 118791092 118791357 -25491132 + AluSx SINE Alu 6 293 -19 1792 162 0 10 chr12 118791552 118791861 -25490628 - AluJo SINE Alu -6 306 1 1785 129 30 10 chr12 118792328 118792623 -25489866 - AluJb SINE Alu -11 301 1 616 210 36 14 chr12 118792671 118792809 -25489680 - MIR SINE MIR 0 262 122 1947 101 67 11 chr12 118793423 118793691 -25488798 - AluSx SINE Alu -17 295 13 2319 119 0 0 chr12 118793706 118794016 -25488473 - AluSg SINE Alu 0 310 1 2108 113 19 44 chr12 118794129 118794318 -25488171 - AluSx SINE Alu 0 312 133 2435 70 3 10 chr12 118794318 118794616 -25487873 - AluY SINE Alu -15 296 1 2108 113 19 44 chr12 118794616 118794744 -25487745 - AluSx SINE Alu -179 133 3 2032 124 10 25 chr12 118794966 118795280 -25487209 + AluSq SINE Alu 1 309 -4 272 317 10 21 chr12 118795575 118795689 -25486800 + MER5B DNA MER1_type 6 128 -61 2443 71 0 3 chr12 118796202 118796497 -25485992 + AluY SINE Alu 1 294 -17 2182 111 27 0 chr12 118796884 118797181 -25485308 - AluSx SINE Alu -7 305 1 2281 102 0 3 chr12 118797553 118797848 -25484641 - AluSg SINE Alu -16 294 1 208 273 0 0 chr12 118797876 118797931 -25484558 + L2 LINE L2 3251 3305 -8 2224 116 13 0 chr12 118797932 118798235 -25484254 + AluSq SINE Alu 1 307 -6 628 296 169 21 chr12 118798412 118798968 -25483521 - L2 LINE L2 -16 3256 2615 882 276 19 22 chr12 118799457 118799725 -25482764 + L1ME4a LINE L1 5479 5745 -376 1379 148 43 17 chr12 118799729 118799959 -25482530 - AluJo SINE Alu -74 238 3 311 250 201 21 chr12 118799981 118800125 -25482364 + L1ME4a LINE L1 5762 5931 -190 809 167 0 0 chr12 118800166 118800298 -25482191 - FLAM_C SINE Alu -1 132 1 1790 135 39 14 chr12 118800304 118800586 -25481903 - AluJo SINE Alu -23 289 1 2145 116 20 13 chr12 118800657 118800958 -25481531 - AluSx SINE Alu -9 303 1 535 96 0 0 chr12 118800996 118801069 -25481420 - AluS SINE Alu -239 74 2 569 220 8 38 chr12 118801367 118801499 -25480990 - FLAM_A SINE Alu -5 128 1 2009 119 43 0 chr12 118801548 118801826 -25480663 + AluSx SINE Alu 1 290 -22 1111 145 0 0 chr12 118801952 118802111 -25480378 - AluSq SINE Alu -37 276 118 448 262 76 17 chr12 118802140 118802312 -25480177 - MIR SINE MIR -5 257 76 2234 106 0 0 chr12 118802374 118802657 -25479832 + AluSq SINE Alu 1 283 -30 2265 108 7 0 chr12 118802657 118802962 -25479527 + AluSq SINE Alu 1 307 -6 2095 142 0 0 chr12 118803236 118803539 -25478950 + AluJb SINE Alu 1 303 -9 2158 109 19 19 chr12 118804070 118804381 -25478108 + AluSx SINE Alu 1 311 -1 481 231 68 0 chr12 118804548 118804665 -25477824 + FLAM_C SINE Alu 15 139 -4 2070 156 0 9 chr12 118804773 118805088 -25477401 - AluSx SINE Alu 0 312 1 2361 112 0 6 chr12 118805221 118805535 -25476954 - AluSx SINE Alu 0 312 1 262 203 16 0 chr12 118805609 118805673 -25476816 + MER116 DNA Mariner 1 65 -15 2458 92 26 0 chr12 118805872 118806218 -25476271 - THE1A LTR MaLR 0 355 1 10550 97 35 1 chr12 118806218 118807747 -25474742 - THE1A-int LTR MaLR 0 1580 1 2411 88 35 0 chr12 118807747 118808090 -25474399 - THE1A LTR MaLR 0 355 1 719 164 179 0 chr12 118808444 118808578 -25473911 + FRAM SINE Alu 7 164 -12 275 309 0 0 chr12 118808784 118808852 -25473637 + MIR SINE MIR 84 151 -57 873 230 78 31 chr12 118809111 118809368 -25473121 - MLT1C LTR MaLR 0 467 199 2127 128 20 0 chr12 118809371 118809667 -25472822 - AluSx SINE Alu -10 302 1 1073 97 8 0 chr12 118809667 118809801 -25472688 - AluSq/x SINE Alu -177 135 1 650 167 81 63 chr12 118809803 118809977 -25472512 - MLT1C LTR MaLR -285 182 6 1915 89 115 7 chr12 118810668 118810937 -25471552 - AluSg1 SINE Alu -11 298 1 193 316 181 35 chr12 118810977 118811148 -25471341 - L2 LINE L2 -92 3180 2985 234 265 88 52 chr12 118811466 118811602 -25470887 - L2 LINE L2 -823 2491 2351 329 301 0 0 chr12 118812019 118812112 -25470377 - MLT1K LTR MaLR -12 576 484 2072 140 7 10 chr12 118812188 118812488 -25470001 - AluSx SINE Alu -11 301 3 307 51 0 0 chr12 118812584 118812623 -25469866 + AluSq SINE Alu 116 154 -149 2010 125 11 7 chr12 118812980 118813267 -25469222 + AluJb SINE Alu 1 288 -24 2291 93 3 0 chr12 118813276 118813567 -25468922 + AluSq SINE Alu 1 292 -21 405 290 106 29 chr12 118813757 118814105 -25468384 - L2 LINE L2 -87 3226 2852 1163 277 120 78 chr12 118814128 118814255 -25468234 - L1MEc LINE L1 -5143 1253 1133 2281 77 0 18 chr12 118814255 118814572 -25467917 - AluY SINE Alu 0 312 1 1163 277 120 78 chr12 118814572 118814675 -25467814 - L1MEc LINE L1 -5263 1133 1036 2334 117 3 0 chr12 118814675 118814984 -25467505 - AluSp SINE Alu -3 310 1 1163 277 120 78 chr12 118814984 118815129 -25467360 - L1MEc LINE L1 -5360 1036 899 2374 109 7 0 chr12 118815129 118815433 -25467056 - AluSp SINE Alu -7 306 1 1163 277 120 78 chr12 118815433 118816223 -25466266 - L1MEc LINE L1 -5497 899 35 21 67 0 0 chr12 118816449 118816479 -25466010 + AT_rich Low_complexity Low_complexity 1 30 0 2248 223 31 20 chr12 118816893 118817449 -25465040 + MER68 LTR ERV1 1 562 0 1901 151 17 10 chr12 118817469 118817761 -25464728 + AluJb SINE Alu 1 294 -18 188 274 120 11 chr12 118817814 118817989 -25464500 + L2 LINE L2 2828 3021 -251 552 230 70 2 chr12 118818579 118818768 -25463721 - MIR SINE MIR -46 216 15 424 254 119 30 chr12 118818861 118818982 -25463507 + MER112 DNA MER1_type 34 143 -117 2196 141 0 3 chr12 118818982 118819294 -25463195 - AluJb SINE Alu -1 311 1 424 254 119 30 chr12 118819294 118819373 -25463116 + MER112 DNA MER1_type 143 252 -8 353 289 21 0 chr12 118819665 118819762 -25462727 - MER5B DNA MER1_type -17 161 63 381 279 33 41 chr12 118820010 118820114 -25462375 - MIR SINE MIR -35 227 123 2904 19 0 0 chr12 118820114 118820426 -25462063 + AluYb8 SINE Alu 1 312 -6 381 279 33 41 chr12 118820426 118820443 -25462046 - MIR SINE MIR -139 123 107 1957 149 0 41 chr12 118821177 118821492 -25460997 + AluSx SINE Alu 1 302 -10 374 153 12 159 chr12 118821628 118821791 -25460698 + MER104 DNA Tc2 3 141 -39 276 354 19 25 chr12 118821862 118822023 -25460466 - L1ME LINE L1 -477 5644 5485 195 42 0 0 chr12 118822198 118822222 -25460267 + (CAT)n Simple_repeat Simple_repeat 2 25 0 330 224 9 84 chr12 118822491 118822531 -25459958 + MIR SINE MIR 21 62 -200 2176 129 0 0 chr12 118822531 118822825 -25459664 - AluSq SINE Alu -14 299 6 1622 133 5 0 chr12 118822825 118823041 -25459448 - AluSx SINE Alu -93 219 1 330 224 9 84 chr12 118823041 118823106 -25459383 + MIR SINE MIR 60 119 -143 284 199 35 135 chr12 118823151 118823292 -25459197 - MIR SINE MIR -62 200 74 1730 100 4 4 chr12 118823300 118823529 -25458960 + AluSp SINE Alu 77 305 -8 2120 133 20 82 chr12 118823967 118824170 -25458319 + L1MB5 LINE L1 5636 5797 -377 2453 97 0 3 chr12 118824170 118824481 -25458008 + AluSx SINE Alu 1 310 -2 2120 133 20 82 chr12 118824481 118824730 -25457759 + L1MB5 LINE L1 5797 6060 -114 604 126 84 17 chr12 118824798 118824917 -25457572 + L1MB5 LINE L1 6048 6174 0 2193 192 38 28 chr12 118825545 118826045 -25456444 + MLT1D LTR MaLR 1 505 0 265 277 143 8 chr12 118826093 118826212 -25456277 - L1MC/D LINE L1 -1990 5818 5684 1794 186 27 0 chr12 118826220 118826521 -25455968 - AluJo SINE Alu 0 312 4 2173 126 3 20 chr12 118826544 118826846 -25455643 - AluSx SINE Alu -15 297 1 235 311 107 74 chr12 118827652 118828018 -25454471 - L2 LINE L2 -25 3288 2911 242 285 136 41 chr12 118828122 118828343 -25454146 - L2 LINE L2 -654 2660 2419 403 244 65 0 chr12 118828693 118828816 -25453673 - MIR SINE MIR -33 229 99 394 272 25 43 chr12 118829112 118829280 -25453209 + MIR SINE MIR 1 160 -59 248 47 0 70 chr12 118829710 118829753 -25452736 + (CCCCCG)n Simple_repeat Simple_repeat 2 41 0 1655 176 172 16 chr12 118830515 118830952 -25451537 - MLT1D LTR MaLR 0 505 1 2219 118 7 3 chr12 118831008 118831312 -25451177 - AluSx SINE Alu -6 306 2 2115 114 0 0 chr12 118831315 118831588 -25450901 - AluSx SINE Alu -37 275 3 2456 67 0 3 chr12 118831600 118831898 -25450591 - AluY SINE Alu -14 297 1 379 268 102 13 chr12 118832677 118832834 -25449655 + L1M4 LINE L1 4077 4247 -1899 2092 142 0 19 chr12 118832973 118833290 -25449199 + AluJo SINE Alu 1 311 -1 1432 211 47 82 chr12 118833305 118833403 -25449086 + Charlie4a DNA MER1_type 11 111 -1850 1700 156 0 80 chr12 118833403 118833717 -25448772 - AluJo SINE Alu -14 298 10 1432 211 47 82 chr12 118833717 118833797 -25448692 + Charlie4a DNA MER1_type 111 192 -1769 2507 84 3 3 chr12 118833797 118834107 -25448382 + AluSq SINE Alu 1 310 -3 1432 211 47 82 chr12 118834107 118834438 -25448051 + Charlie4a DNA MER1_type 192 503 -5 1829 181 3 0 chr12 118834609 118834897 -25447592 - AluJb SINE Alu -23 289 1 316 252 136 34 chr12 118835497 118835644 -25446845 - L2 LINE L2 -2 3311 3150 846 150 0 0 chr12 118835662 118835782 -25446707 + FLAM_C SINE Alu 1 120 -23 222 118 0 0 chr12 118835797 118835831 -25446658 + (CA)n Simple_repeat Simple_repeat 2 35 0 30 83 0 0 chr12 118835831 118835903 -25446586 + AT_rich Low_complexity Low_complexity 1 72 0 279 0 0 0 chr12 118835907 118835938 -25446551 + (CA)n Simple_repeat Simple_repeat 2 32 0 1130 141 0 0 chr12 118835943 118836099 -25446390 + AluJb SINE Alu 135 290 -22 383 255 52 47 chr12 118836186 118836378 -25446111 - L2 LINE L2 -220 3052 2860 409 255 27 27 chr12 118836480 118836629 -25445860 - AluYa5 SINE Alu -4 297 149 341 152 5 16 chr12 118836810 118836879 -25445610 - Alu SINE Alu -259 44 1 1616 189 50 67 chr12 118836884 118837034 -25445455 - L1MB5 LINE L1 -14 6160 6009 784 171 0 0 chr12 118837034 118837163 -25445326 + FLAM_A SINE Alu 2 130 -3 1616 189 50 67 chr12 118837163 118837429 -25445060 - L1MB5 LINE L1 -165 6009 5751 540 295 212 19 chr12 118837435 118838066 -25444423 - L2 LINE L2 -607 2707 1955 2392 93 0 3 chr12 118838249 118838549 -25443940 - AluSg SINE Alu -11 299 1 342 240 116 17 chr12 118838559 118838689 -25443800 - MIR SINE MIR -62 146 15 817 152 0 0 chr12 118838767 118838899 -25443590 - FLAM_C SINE Alu -1 132 1 2310 116 0 0 chr12 118839445 118839748 -25442741 + AluSx SINE Alu 1 303 -9 214 338 28 0 chr12 118840313 118840384 -25442105 - MIR SINE MIR -32 230 158 770 227 170 50 chr12 118840391 118840827 -25441662 - MLT1J LTR MaLR -3 508 21 240 318 24 0 chr12 118840834 118840919 -25441570 - MIR SINE MIR -64 144 58 235 338 14 0 chr12 118841113 118841187 -25441302 - L3 LINE CR1 -110 1467 1393 1090 136 13 0 chr12 118841201 118841355 -25441134 - AluJb SINE Alu -19 293 138 591 297 115 18 chr12 118841496 118841826 -25440663 + MLT1K LTR MaLR 224 585 -3 489 265 49 27 chr12 118841915 118842100 -25440389 + MER5A DNA MER1_type 1 189 0 2135 108 0 4 chr12 118842173 118842450 -25440039 + AluSx SINE Alu 1 276 -36 1163 93 7 0 chr12 118842576 118842726 -25439763 - AluSp/q SINE Alu -8 305 155 2260 97 0 10 chr12 118843113 118843285 -25439204 - AluSx SINE Alu 0 305 136 2441 92 3 0 chr12 118843285 118843588 -25438901 - AluSp SINE Alu -8 305 2 2260 97 0 10 chr12 118843588 118843723 -25438766 - AluSx SINE Alu -169 136 1 1377 158 84 77 chr12 118843748 118843764 -25438725 + AluJb SINE Alu 1 312 0 1424 153 48 82 chr12 118843764 118844058 -25438431 + AluJb SINE Alu 29 312 0 455 231 116 56 chr12 118844061 118844312 -25438177 + L1MC5 LINE L1 7691 7956 -5 2262 120 0 0 chr12 118844328 118844620 -25437869 - AluSx SINE Alu -20 292 1 616 285 30 34 chr12 118844682 118844945 -25437544 + L1MC4a LINE L1 5614 5875 -1933 1958 138 0 38 chr12 118845002 118845321 -25437168 + AluJo SINE Alu 1 307 -5 923 104 0 8 chr12 118846059 118846184 -25436305 + AluJb SINE Alu 174 297 -15 508 169 0 11 chr12 118846184 118846273 -25436216 - L1MC1 LINE L1 -16 6317 6230 28 29 0 0 chr12 118846313 118846348 -25436141 + AT_rich Low_complexity Low_complexity 1 35 0 523 130 70 70 chr12 118846371 118846486 -25436003 + FRAM SINE Alu 40 154 -22 2594 62 7 0 chr12 118846525 118846834 -25435655 + AluY SINE Alu 1 311 0 662 228 91 54 chr12 118847050 118847152 -25435337 - MIR SINE MIR 0 262 165 7200 48 24 5 chr12 118847152 118848568 -25433921 - L1PA6 LINE L1 0 6154 4725 662 228 91 54 chr12 118848568 118848706 -25433783 - MIR SINE MIR -97 165 13 719 202 64 199 chr12 118849110 118849204 -25433285 + L1MEd LINE L1 449 554 -5565 2160 129 7 13 chr12 118849204 118849514 -25432975 + AluSx SINE Alu 3 310 -2 719 202 64 199 chr12 118849514 118849871 -25432618 + L1MEd LINE L1 554 957 -5162 2125 127 0 3 chr12 118849871 118850163 -25432326 - AluSg1 SINE Alu -18 291 1 719 202 64 199 chr12 118850163 118850200 -25432289 + L1MEd LINE L1 957 997 -5122 2196 92 43 0 chr12 118850200 118850482 -25432007 - AluSx SINE Alu -18 294 1 719 202 64 199 chr12 118850482 118850568 -25431921 + L1MEd LINE L1 997 884 -5235 396 0 0 0 chr12 118850568 118850612 -25431877 + (TAA)n Simple_repeat Simple_repeat 2 45 0 719 202 64 199 chr12 118850612 118850860 -25431629 + L1MEd LINE L1 883 1163 -4956 1021 96 0 7 chr12 118850896 118851032 -25431457 + AluSq/x SINE Alu 1 135 -178 2566 84 0 0 chr12 118851072 118851381 -25431108 + AluY SINE Alu 1 309 -2 822 170 0 15 chr12 118851386 118851521 -25430968 + AluJo SINE Alu 2 134 -178 2230 110 10 10 chr12 118851526 118851835 -25430654 + AluSx SINE Alu 1 309 -3 706 214 0 0 chr12 118851903 118852034 -25430455 + FLAM_A SINE Alu 1 131 -2 2049 113 7 3 chr12 118852278 118852586 -25429903 + AluSp SINE Alu 1 309 0 1739 152 104 9 chr12 118852599 118852915 -25429574 + MER7A DNA MER2_type 1 344 -2 23 33 0 0 chr12 118852916 118852946 -25429543 + AT_rich Low_complexity Low_complexity 1 30 0 2135 120 13 0 chr12 118852992 118853300 -25429189 + AluSx SINE Alu 1 312 0 1945 118 20 10 chr12 118853424 118853728 -25428761 + AluSp SINE Alu 1 307 -6 1846 152 10 7 chr12 118853766 118854062 -25428427 - AluSx SINE Alu -15 297 1 1932 128 52 3 chr12 118854461 118854751 -25427738 + AluSx SINE Alu 2 305 -7 2337 89 3 0 chr12 118855174 118855465 -25427024 + AluSx SINE Alu 21 312 0 1398 127 0 42 chr12 118855961 118856174 -25426315 - AluJb SINE Alu -24 288 85 2254 88 10 10 chr12 118856252 118856549 -25425940 - AluSp SINE Alu -16 297 1 2169 128 0 3 chr12 118856985 118857282 -25425207 - AluSx SINE Alu -16 296 1 2286 68 0 11 chr12 118858046 118858324 -25424165 - AluY SINE Alu -36 275 1 1642 183 7 10 chr12 118864150 118864439 -25418050 - AluJo SINE Alu -24 288 1 2494 75 0 0 chr12 118864586 118864893 -25417596 + AluY SINE Alu 2 308 -3 804 177 7 0 chr12 118864908 118865049 -25417440 + FLAM_C SINE Alu 1 142 -1 856 144 0 0 chr12 118865570 118865695 -25416794 + FLAM_C SINE Alu 1 125 -18 2313 88 3 0 chr12 118866513 118866828 -25415661 + AluSp SINE Alu 1 316 0 886 97 0 0 chr12 118867173 118867286 -25415203 + AluSp/q SINE Alu 179 291 -22 1230 182 0 14 chr12 118867385 118867599 -25414890 + MER46A DNA MER2_type 26 236 0 1548 166 17 60 chr12 118867682 118867984 -25414505 - AluSx SINE Alu -23 289 1 28 48 0 0 chr12 118868452 118868494 -25413995 + AT_rich Low_complexity Low_complexity 1 42 0 2685 39 3 0 chr12 118868850 118869160 -25413329 + AluY SINE Alu 1 311 0 739 206 84 7 chr12 118869201 118869356 -25413133 + FRAM SINE Alu 1 164 -12 2220 113 0 3 chr12 118869925 118870225 -25412264 - AluSc SINE Alu -10 299 1 341 164 164 14 chr12 118870439 118870512 -25411977 + L1MB7 LINE L1 5902 5985 -193 459 151 85 9 chr12 118870516 118870622 -25411867 + L1MB7 LINE L1 6071 6184 0 1662 179 4 4 chr12 118870809 118871088 -25411401 + AluJb SINE Alu 1 279 -33 1069 100 52 14 chr12 118872908 118873158 -25409331 + AluSc SINE Alu 2 309 0 761 215 60 0 chr12 118874361 118874510 -25407979 - AluJb SINE Alu -18 294 137 186 197 197 0 chr12 118874942 118875013 -25407476 + L2 LINE L2 3187 3271 -1 2213 96 10 0 chr12 118875081 118875373 -25407116 - AluSp SINE Alu -18 295 1 747 120 106 14 chr12 118875591 118875733 -25406756 + AluSg/x SINE Alu 135 289 -21 1675 99 0 5 chr12 118875845 118876067 -25406422 - AluSg1 SINE Alu -88 221 1 1095 107 0 0 chr12 118876092 118876242 -25406247 - AluY SINE Alu 0 311 162 21 0 0 0 chr12 118876353 118876374 -25406115 + AT_rich Low_complexity Low_complexity 1 21 0 1252 110 0 0 chr12 118876606 118876769 -25405720 - AluSg/x SINE Alu -23 287 125 2386 88 3 7 chr12 118876779 118877087 -25405402 - AluSp SINE Alu -6 307 1 2225 132 3 0 chr12 118877101 118877412 -25405077 - AluSx SINE Alu 0 312 1 2313 107 0 0 chr12 118878357 118878656 -25403833 - AluSx SINE Alu -13 299 1 6859 57 28 3 chr12 118879108 118880253 -25402236 + L1PA7 LINE L1 4989 6154 0 205 146 0 83 chr12 118880803 118880851 -25401638 - L2 LINE L2 -10 3262 3219 * 351 218 150 8 chr12 118880820 118880953 -25401536 - MIR SINE MIR -17 245 94 1375 130 5 5 chr12 118880973 118881201 -25401288 - AluSg/x SINE Alu 0 309 82 1980 133 3 0 chr12 118881319 118881604 -25400885 + AluSx SINE Alu 18 303 -9 553 266 90 22 chr12 118881658 118881880 -25400609 - L1ME LINE L1 -383 5738 5502 21 95 0 0 chr12 118882023 118882086 -25400403 + AT_rich Low_complexity Low_complexity 1 63 0 406 239 51 26 chr12 118882261 118882378 -25400111 + L2 LINE L2 3149 3268 -4 600 88 0 0 chr12 118882555 118882635 -25399854 - MADE1 DNA Mariner 0 80 1 565 283 121 0 chr12 118882683 118882856 -25399633 - L3 LINE CR1 -9 1568 1375 262 272 150 6 chr12 118882919 118883092 -25399397 - MIR SINE MIR -57 205 8 2016 152 20 0 chr12 118883310 118883612 -25398877 + AluJb SINE Alu 1 308 -4 1561 236 118 10 chr12 118883648 118884131 -25398358 + L1MC4a LINE L1 5425 5959 -1849 933 136 0 0 chr12 118884344 118884476 -25398013 + AluSq/x SINE Alu 1 132 -180 25 0 0 0 chr12 118884886 118884911 -25397578 + AT_rich Low_complexity Low_complexity 1 25 0 1189 159 0 109 chr12 118885324 118885607 -25396882 + AluJb SINE Alu 44 295 -17 190 296 0 0 chr12 118887094 118887138 -25395351 + MIR SINE MIR 31 74 -188 238 327 27 45 chr12 118887741 118887851 -25394638 + L2 LINE L2 3204 3311 -2 235 310 20 0 chr12 118887932 118888032 -25394457 - MIR SINE MIR -33 229 128 285 29 0 0 chr12 118889235 118889269 -25393220 + (TG)n Simple_repeat Simple_repeat 1 34 0 2621 142 56 16 chr12 118889464 118889950 -25392539 - L1MB7 LINE L1 -20 6164 5660 338 243 83 14 chr12 118889948 118890092 -25392397 - L1ME4a LINE L1 -106 6015 5862 * 1899 132 10 45 chr12 118892396 118892558 -25389931 - AluJo SINE Alu -13 299 152 2253 112 3 0 chr12 118892558 118892852 -25389637 - AluSx SINE Alu -17 295 1 1899 132 10 45 chr12 118892852 118892999 -25389490 - AluJo SINE Alu -160 152 1 1020 240 98 21 chr12 118893137 118893483 -25389006 - HAL1 LINE L1 0 2507 2128 1797 154 11 0 chr12 118893483 118893768 -25388721 - AluJb SINE Alu -24 288 1 1020 240 98 21 chr12 118893768 118893800 -25388689 - HAL1 LINE L1 -379 2128 2100 370 211 122 64 chr12 118893863 118894019 -25388470 + MER103 DNA DNA 1 165 -1 2274 98 7 7 chr12 118894190 118894497 -25387992 + AluSq SINE Alu 1 307 -6 892 140 87 0 chr12 118894529 118894679 -25387810 + FRAM SINE Alu 1 163 -13 369 313 33 53 chr12 118895016 118895232 -25387257 + MIR SINE MIR 3 226 -36 293 211 74 32 chr12 118896192 118896287 -25386202 - L1MC5 LINE L1 -30 7931 7833 1950 145 17 0 chr12 118897776 118898066 -25384423 - AluJo SINE Alu -17 295 1 2350 96 3 0 chr12 118899648 118899940 -25382549 - AluSp SINE Alu -20 293 1 2016 129 7 20 chr12 118900491 118900794 -25381695 - AluJb SINE Alu -13 299 1 190 289 0 0 chr12 118901366 118901411 -25381078 - L2 LINE L2 -58 3255 3211 369 259 81 60 chr12 118901411 118901596 -25380893 + L1MB5 LINE L1 5564 5752 -2056 584 165 41 25 chr12 118901684 118901805 -25380684 + FLAM_A SINE Alu 1 123 -10 2001 122 26 7 chr12 118901907 118902210 -25380279 + AluSx SINE Alu 1 309 -3 995 272 131 64 chr12 118902235 118902973 -25379516 + L1MC4 LINE L1 6840 7527 -515 1983 165 3 0 chr12 118902973 118903276 -25379213 + AluJo SINE Alu 1 304 -8 995 272 131 64 chr12 118903276 118903355 -25379134 + L1MC4 LINE L1 7527 7599 -443 2104 112 21 0 chr12 118903355 118903642 -25378847 + AluSx SINE Alu 1 293 -19 995 272 131 64 chr12 118903642 118903778 -25378711 + L1MC4 LINE L1 7599 7858 -184 598 144 0 29 chr12 118903948 118904052 -25378437 + AluJ/FLAM SINE Alu 1 101 -211 2302 104 0 3 chr12 118904267 118904575 -25377914 - AluSq SINE Alu -6 307 1 2284 125 0 0 chr12 118905501 118905798 -25376691 - AluSx SINE Alu -13 299 3 209 327 19 10 chr12 118906170 118906274 -25376215 + (TGG)n Simple_repeat Simple_repeat 1 105 0 1485 162 88 31 chr12 118906775 118907006 -25375483 + L1MB5 LINE L1 5803 6062 -112 2482 93 0 3 chr12 118907006 118907318 -25375171 + AluSq SINE Alu 1 311 -2 1485 162 88 31 chr12 118907318 118907438 -25375051 + L1MB5 LINE L1 6062 6174 0 246 372 52 0 chr12 118907683 118907855 -25374634 + MIR SINE MIR 47 227 -35 191 279 0 0 chr12 118908596 118908639 -25373850 + L2 LINE L2 3271 3313 0 920 134 0 0 chr12 118909431 118909558 -25372931 + FLAM_C SINE Alu 1 127 -6 2142 105 18 0 chr12 118909580 118909857 -25372632 + AluSx SINE Alu 1 282 -30 180 0 0 0 chr12 118909857 118909877 -25372612 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 1707 82 5 0 chr12 118909889 118910095 -25372394 + AluSq SINE Alu 1 207 -106 1411 215 105 15 chr12 118910359 118910763 -25371726 - L1MB8 LINE L1 -17 6161 5718 256 270 27 27 chr12 118910788 118910862 -25371627 + L2 LINE L2 3238 3311 -2 204 97 0 0 chr12 118911099 118911130 -25371359 + (TCC)n Simple_repeat Simple_repeat 1 31 0 645 295 60 44 chr12 118912106 118912220 -25370269 + L1ME3 LINE L1 5012 5123 -1039 1879 175 0 10 chr12 118912220 118912528 -25369961 + AluSx SINE Alu 7 311 -1 645 295 60 44 chr12 118912528 118913115 -25369374 + L1ME3 LINE L1 5123 5732 -430 1814 152 51 0 chr12 118913115 118913411 -25369078 + AluJb SINE Alu 1 311 -1 645 295 60 44 chr12 118913411 118913512 -25368977 + L1ME3 LINE L1 5732 5830 -332 567 241 8 15 chr12 118913544 118913677 -25368812 + L2 LINE L2 1954 2085 -1229 1477 203 23 23 chr12 118913713 118914014 -25368475 - AluJo SINE Alu -11 301 1 245 233 17 0 chr12 118914032 118914092 -25368397 + L2 LINE L2 3237 3297 -16 588 274 49 27 chr12 118914905 118915128 -25367361 + MIR SINE MIR 6 233 -29 2055 102 29 0 chr12 118915180 118915491 -25366998 - AluSx SINE Alu 0 319 1 920 134 0 0 chr12 118915513 118915640 -25366849 - FLAM_C SINE Alu -6 127 1 424 271 28 57 chr12 118916964 118917141 -25365348 + MIR SINE MIR 59 230 -32 865 160 35 0 chr12 118917157 118917301 -25365188 + MIR SINE MIR 16 164 -98 2169 88 44 0 chr12 118917309 118917583 -25364906 + AluSx SINE Alu 9 294 -18 2065 131 0 3 chr12 118917620 118917902 -25364587 + AluSg1 SINE Alu 1 281 -28 544 221 76 17 chr12 118917933 118918105 -25364384 + MLT1C LTR MaLR 208 389 -78 1537 228 74 14 chr12 118918115 118918545 -25363944 - MLT1C LTR MaLR -6 461 6 386 244 177 12 chr12 118918579 118918743 -25363746 + L2 LINE L2 2538 2728 -586 520 291 114 0 chr12 118919342 118919579 -25362910 + Charlie8 DNA MER1_type 1 264 -2153 2137 116 10 0 chr12 118919680 118919972 -25362517 - AluSx SINE Alu -9 303 9 847 286 36 0 chr12 118920067 118920291 -25362198 - MIR SINE MIR -29 233 2 2418 86 0 0 chr12 118920584 118920887 -25361602 + AluY SINE Alu 1 303 -8 1996 112 32 4 chr12 118920895 118921173 -25361316 + AluSp SINE Alu 1 286 -27 2161 120 7 0 chr12 118921184 118921475 -25361014 + AluSx SINE Alu 1 293 -19 496 244 0 8 chr12 118922280 118922403 -25360086 + L1M3 LINE L1 5550 5671 -512 424 192 50 17 chr12 118922576 118922696 -25359793 + FRAM SINE Alu 53 176 0 361 313 33 53 chr12 118923009 118923225 -25359264 + MIR SINE MIR 3 226 -36 27 0 0 0 chr12 118925478 118925505 -25356984 + AT_rich Low_complexity Low_complexity 1 27 0 1687 183 25 0 chr12 118925620 118925904 -25356585 + AluJb SINE Alu 1 291 -21 475 42 153 14 chr12 118925910 118925982 -25356507 + AluSq/x SINE Alu 50 131 -181 556 219 91 27 chr12 118926503 118926690 -25355799 - L1ME1 LINE L1 -36 6130 5932 289 207 281 16 chr12 118928059 118928180 -25354309 - MIR SINE MIR -77 185 33 189 370 12 0 chr12 118928318 118928399 -25354090 + L2 LINE L2 3232 3313 0 1102 176 14 53 chr12 118929158 118929442 -25353047 - AluSg SINE Alu -33 277 5 1556 125 177 0 chr12 118929653 118929901 -25352588 - AluJo SINE Alu -20 292 1 758 184 129 0 chr12 118931705 118931852 -25350637 + FRAM SINE Alu 1 166 0 2263 88 3 0 chr12 118932927 118933243 -25349246 + AluSq SINE Alu 1 317 0 1282 111 148 0 chr12 118933422 118933639 -25348850 + AluSg SINE Alu 45 293 -17 24 0 0 0 chr12 118933639 118933663 -25348826 + AT_rich Low_complexity Low_complexity 1 24 0 229 81 0 0 chr12 118933666 118933703 -25348786 + L1M4 LINE L1 4616 4652 -1494 2117 99 65 3 chr12 118933807 118934100 -25348389 + AluSp SINE Alu 1 311 -2 641 313 38 21 chr12 118935226 118935466 -25347023 - MIR SINE MIR -3 259 16 445 255 67 6 chr12 118936166 118936320 -25346169 - MLT1H LTR MaLR -366 183 19 300 289 52 21 chr12 118936486 118936583 -25345906 + L2 LINE L2 3163 3262 -10 273 321 36 12 chr12 118936701 118936785 -25345704 + L2 LINE L2 3187 3272 0 357 286 93 44 chr12 118936966 118937148 -25345341 - MIR3 SINE MIR -12 196 6 191 330 80 10 chr12 118937888 118937988 -25344501 + MIR SINE MIR 50 156 -106 2599 219 36 9 chr12 118938158 118938793 -25343696 - L1MB7 LINE L1 -10 6174 5523 1416 202 18 7 chr12 118939241 118939523 -25342966 - AluJo SINE Alu -25 287 3 537 283 155 23 chr12 118939526 118939706 -25342783 - L2 LINE L2 -8 3305 3150 1535 207 0 43 chr12 118939706 118939837 -25342652 + AluJb SINE Alu 1 136 -176 2136 111 17 0 chr12 118939837 118940126 -25342363 - AluSq SINE Alu -19 294 1 1535 207 0 43 chr12 118940126 118940299 -25342190 + AluJb SINE Alu 136 292 -20 537 283 155 23 chr12 118940299 118940422 -25342067 - L2 LINE L2 -163 3150 2962 1944 126 49 7 chr12 118941663 118941949 -25340540 + AluSx SINE Alu 1 298 -14 2145 110 19 19 chr12 118942153 118942463 -25340026 + AluSx SINE Alu 1 310 -2 1099 180 140 40 chr12 118942619 118942891 -25339598 + AluJo SINE Alu 1 299 -3 191 59 0 59 chr12 118943461 118943495 -25338994 + (TCC)n Simple_repeat Simple_repeat 2 33 0 1550 189 11 14 chr12 118943495 118943776 -25338713 - AluJo SINE Alu -15 297 18 433 274 53 9 chr12 118944000 118944113 -25338376 + MIR SINE MIR 34 151 -111 502 275 143 35 chr12 118944186 118944444 -25338045 + MLT1G1 LTR MaLR 12 297 -298 244 342 9 36 chr12 118944853 118944964 -25337525 + L2 LINE L2 3137 3244 -28 286 276 35 0 chr12 118945039 118945126 -25337363 - MIR SINE MIR -73 189 100 706 228 98 5 chr12 118945126 118945341 -25337148 - LTR16B LTR ERVL -8 456 222 2125 99 0 7 chr12 118945392 118945674 -25336815 + AluSc SINE Alu 1 280 -29 269 136 86 16 chr12 118945711 118945803 -25336686 + AluS SINE Alu 1 77 -231 3737 179 46 19 chr12 118945985 118946862 -25335627 + L1 LINE L1 2993 3892 -2254 181 94 0 78 chr12 118946864 118946928 -25335561 + (TA)n Simple_repeat Simple_repeat 1 59 0 427 96 206 7 chr12 118946974 118947120 -25335369 + AluY SINE Alu 2 176 -135 262 207 12 0 chr12 118947329 118947403 -25335086 - L1ME LINE L1 -339 5782 5704 2008 142 10 6 chr12 118947405 118947716 -25334773 + AluSx SINE Alu 1 312 0 903 180 0 0 chr12 118947741 118947880 -25334609 + FLAM_C SINE Alu 1 139 -4 485 267 24 21 chr12 118947884 118948074 -25334415 - L1ME LINE L1 -469 5652 5502 1446 89 5 11 chr12 118948697 118948887 -25333602 - AluSg SINE Alu -121 189 1 526 173 192 0 chr12 118948892 118948996 -25333493 - FRAM SINE Alu -22 154 31 188 378 22 0 chr12 118949385 118949475 -25333014 - MER5A DNA MER1_type -8 181 90 * 190 303 79 13 chr12 118949423 118949499 -25332990 + MER5A DNA MER1_type 57 137 -52 204 156 0 0 chr12 118949819 118949851 -25332638 + L2 LINE L2 3221 3252 -20 1438 146 6 100 chr12 118953051 118953380 -25329109 + AluJb SINE Alu 1 298 -14 287 244 82 15 chr12 118953387 118953522 -25328967 + L1ME4a LINE L1 5978 6121 0 2276 159 8 58 chr12 118954499 118954996 -25327493 + L1MB8 LINE L1 5695 6166 -12 353 101 76 0 chr12 118954996 118955069 -25327420 + L1MB7 LINE L1 6100 6184 0 3002 50 32 32 chr12 118955230 118955691 -25326798 + SVA Other Other 1 461 -925 1065 74 15 0 chr12 118955850 118955985 -25326504 - AluSp SINE Alu -176 137 1 594 180 137 0 chr12 118955985 118956124 -25326365 - Tigger1 DNA MER2_type -945 1473 1316 1884 130 0 0 chr12 118956124 118956386 -25326103 - AluSx SINE Alu -14 298 37 495 146 0 0 chr12 118956388 118956484 -25326005 + Charlie5 DNA MER1_type 2450 2545 -67 407 82 0 16 chr12 118956486 118956547 -25325942 - AluSx SINE Alu -8 303 244 1126 162 12 0 chr12 118956547 118956720 -25325769 - AluSx SINE Alu -137 175 1 293 235 12 0 chr12 118956723 118956804 -25325685 + Charlie5 DNA MER1_type 2543 2624 0 476 242 25 0 chr12 118956819 118956939 -25325550 + MER58A DNA MER1_type 5 127 0 1631 164 4 11 chr12 118958272 118958524 -25323965 + AluJb SINE Alu 32 283 -29 438 20 0 0 chr12 118958524 118958575 -25323914 + (CA)n Simple_repeat Simple_repeat 2 52 0 1631 164 4 11 chr12 118958575 118958590 -25323899 + AluJb SINE Alu 283 297 -15 189 0 0 0 chr12 118958788 118958809 -25323680 + (T)n Simple_repeat Simple_repeat 1 21 0 1226 94 6 0 chr12 118958831 118958990 -25323499 - AluSx SINE Alu -152 160 1 2155 107 4 0 chr12 118958991 118959272 -25323217 - AluSq SINE Alu -31 282 1 318 263 73 22 chr12 118959334 118959471 -25323018 + MIR SINE MIR 76 219 -43 372 324 53 13 chr12 118959857 118960175 -25322314 + L1ME LINE L1 5191 5526 -640 236 381 10 10 chr12 118961033 118961130 -25321359 + MIR SINE MIR 20 116 -92 1070 168 144 24 chr12 118962252 118962460 -25320029 - AluJo SINE Alu -79 233 1 443 157 78 20 chr12 118962461 118962563 -25319926 - MLT1D LTR MaLR -316 189 82 1091 166 6 0 chr12 118962577 118962752 -25319737 - AluJb SINE Alu -1 311 136 180 104 65 13 chr12 118963590 118963667 -25318822 + (TG)n Simple_repeat Simple_repeat 1 81 0 327 113 51 34 chr12 118963700 118963877 -25318612 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 390 132 57 0 chr12 118963996 118964155 -25318334 + (TG)n Simple_repeat Simple_repeat 1 168 0 404 143 71 12 chr12 118964159 118964327 -25318162 + (GTGTG)n Simple_repeat Simple_repeat 1 178 0 454 94 67 7 chr12 118964327 118964476 -25318013 + (TG)n Simple_repeat Simple_repeat 2 159 0 397 141 36 79 chr12 118964476 118964841 -25317648 + (GTGTG)n Simple_repeat Simple_repeat 1 349 0 198 80 60 0 chr12 118964853 118964903 -25317586 + (TG)n Simple_repeat Simple_repeat 2 54 0 276 89 98 0 chr12 118964939 118965062 -25317427 + (TG)n Simple_repeat Simple_repeat 1 135 0 323 302 24 24 chr12 118965243 118965369 -25317120 + MIR SINE MIR 31 156 -106 550 319 60 26 chr12 118965424 118965841 -25316648 + L2 LINE L2 2560 2998 -274 234 321 12 12 chr12 118966131 118966212 -25316277 - AluSc SINE Alu -43 256 176 972 182 0 0 chr12 118966432 118966591 -25315898 - AluJb SINE Alu -21 291 133 1096 230 50 57 chr12 118966602 118966682 -25315807 - L1ME2 LINE L1 -266 5898 5819 2212 111 3 25 chr12 118966682 118966997 -25315492 - AluJb SINE Alu -4 308 1 1096 230 50 57 chr12 118966997 118967320 -25315169 - L1ME2 LINE L1 -345 5819 5498 282 267 30 10 chr12 118967352 118967453 -25315036 - AluSg/x SINE Alu -6 296 194 345 245 0 0 chr12 118967581 118967683 -25314806 + (CA)n Simple_repeat Simple_repeat 1 102 0 334 167 0 0 chr12 118968837 118968897 -25313592 + Charlie1 DNA MER1_type 167 226 -2535 * 552 243 7 7 chr12 118968895 118969035 -25313454 + Charlie1 DNA MER1_type 2622 2761 0 207 0 0 0 chr12 118970132 118970155 -25312334 + (A)n Simple_repeat Simple_repeat 1 23 0 248 143 41 0 chr12 118970338 118970387 -25312102 - HSMAR1 DNA Mariner -2 1285 1235 1033 133 18 68 chr12 118970391 118970661 -25311828 + L1M4 LINE L1 5531 5781 -399 360 43 0 0 chr12 118974340 118974386 -25308103 + (CA)n Simple_repeat Simple_repeat 2 47 0 369 280 56 8 chr12 118977048 118977173 -25305316 - MIR SINE MIR -81 181 51 201 288 68 0 chr12 118978662 118978721 -25303768 - MIR SINE MIR -90 172 110 240 35 0 0 chr12 118979200 118979229 -25303260 + (TA)n Simple_repeat Simple_repeat 2 30 0 468 35 0 0 chr12 118979232 118979290 -25303199 + (GA)n Simple_repeat Simple_repeat 2 59 0 199 361 12 0 chr12 118979292 118979375 -25303114 - MIR SINE MIR -25 237 154 896 120 0 0 chr12 118980444 118980561 -25301928 - AluSq/x SINE Alu -196 117 1 250 279 81 0 chr12 118980571 118980657 -25301832 - L2 LINE L2 0 3313 3221 1946 109 58 34 chr12 118980661 118980955 -25301534 + AluSx SINE Alu 1 301 -11 692 328 45 60 chr12 118980959 118981429 -25301060 - MLT1K LTR MaLR -113 475 13 978 185 6 0 chr12 118981535 118981697 -25300792 + FRAM SINE Alu 2 164 -2 2241 92 7 0 chr12 118982195 118982499 -25299990 + AluSx SINE Alu 1 306 0 2055 167 0 0 chr12 118982684 118982989 -25299500 - AluSx SINE Alu -7 305 1 2061 141 3 10 chr12 118982989 118983293 -25299196 - AluJo SINE Alu -8 304 3 30 0 0 0 chr12 118983717 118983747 -25298742 + AT_rich Low_complexity Low_complexity 1 30 0 1279 141 27 0 chr12 118983760 118983945 -25298544 + AluJo SINE Alu 85 274 -38 840 157 0 0 chr12 118983974 118984089 -25298400 - FLAM_A SINE Alu -17 116 2 420 228 73 17 chr12 118984097 118984233 -25298256 - MIR SINE MIR -64 144 2 2197 104 3 16 chr12 118984260 118984568 -25297921 + AluSx SINE Alu 1 304 -8 659 287 81 5 chr12 118984609 118984818 -25297671 - MIR SINE MIR -1 261 37 551 167 0 10 chr12 118984894 118984996 -25297493 - MER96 DNA MER1_type? -74 101 1 1198 182 128 57 chr12 118984996 118985163 -25297326 + LTR16C LTR ERVL 80 234 -257 231 61 0 0 chr12 118985163 118985196 -25297293 + (TATG)n Simple_repeat Simple_repeat 2 34 0 1574 127 41 0 chr12 118985196 118985417 -25297072 - AluSx SINE Alu -27 285 56 1198 182 128 57 chr12 118985417 118985616 -25296873 + LTR16C LTR ERVL 233 473 -18 2254 111 7 7 chr12 118985753 118986059 -25296430 + AluSg SINE Alu 2 307 -3 1959 164 0 16 chr12 118986499 118986809 -25295680 - AluSx SINE Alu -7 305 1 328 271 37 50 chr12 118986844 118986993 -25295496 + L1MC4 LINE L1 6545 6633 -1152 659 271 5 37 chr12 118987101 118987289 -25295200 - MIR SINE MIR -47 215 34 450 271 116 67 chr12 118987327 118987611 -25294878 - MLT1I LTR MaLR -14 395 98 192 77 0 0 chr12 118987987 118988013 -25294476 + (TAA)n Simple_repeat Simple_repeat 3 28 0 238 246 112 75 chr12 118988014 118988148 -25294341 - MIR SINE MIR -7 255 117 2068 148 0 0 chr12 118988402 118988699 -25293790 - AluJo SINE Alu -15 297 1 2073 112 41 0 chr12 118988766 118989060 -25293429 + AluSx SINE Alu 1 306 -6 269 235 0 15 chr12 118989074 118989142 -25293347 - MLT1J LTR MaLR -31 480 414 565 126 32 0 chr12 118989144 118989239 -25293250 + MER4A LTR ERV1 1 98 -566 1824 120 3 41 chr12 118989239 118989598 -25292891 + MER4A LTR ERV1 261 664 0 913 293 11 7 chr12 118989605 118989878 -25292611 - MLT1J LTR MaLR -105 406 133 1533 153 27 44 chr12 118989897 118990028 -25292461 - MER41B LTR ERV1 0 635 503 1983 161 3 0 chr12 118990028 118990326 -25292163 + AluJb SINE Alu 1 299 -13 2266 118 0 0 chr12 118990331 118990637 -25291852 + AluY SINE Alu 1 306 -5 1533 153 27 44 chr12 118990637 118990793 -25291696 - MER41B LTR ERV1 -136 499 347 3805 92 31 38 chr12 118990798 118991376 -25291113 - LTR19B LTR ERV1 -6 574 1 576 62 12 0 chr12 118991376 118991456 -25291033 - MER41B LTR ERV1 -295 340 260 441 0 0 0 chr12 118991461 118991510 -25290979 + (CA)n Simple_repeat Simple_repeat 2 50 0 221 244 0 0 chr12 118991510 118991555 -25290934 - MIR SINE MIR -149 113 69 1323 143 0 0 chr12 118991611 118991793 -25290696 - AluSg/x SINE Alu -11 299 118 797 170 0 0 chr12 118991793 118991928 -25290561 + MER41B LTR ERV1 139 273 -362 2384 90 0 10 chr12 118991930 118992241 -25290248 + AluY SINE Alu 1 308 -3 2366 92 0 25 chr12 118992404 118992540 -25289949 + AluSx SINE Alu 1 139 -173 2384 87 3 0 chr12 118992540 118992839 -25289650 + AluSg SINE Alu 1 300 -10 2366 92 0 25 chr12 118992839 118993017 -25289472 + AluSx SINE Alu 139 307 -5 723 258 0 6 chr12 118993159 118993326 -25289163 + MIR SINE MIR 49 214 -48 599 167 86 37 chr12 118993424 118993453 -25289036 - MER33 DNA MER1_type -2261 324 298 2169 106 24 0 chr12 118993453 118993746 -25288743 + AluSq SINE Alu 1 300 -13 599 167 86 37 chr12 118993746 118993878 -25288611 - MER33 DNA MER1_type -2287 298 155 2255 127 13 0 chr12 118993887 118994194 -25288295 + AluSq SINE Alu 1 311 -2 884 181 0 0 chr12 118994207 118994377 -25288112 + FLAM_C SINE Alu 1 170 0 323 111 0 32 chr12 118994464 118994527 -25287962 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 545 197 49 0 chr12 118994591 118994713 -25287776 - MER33 DNA MER1_type -191 133 6 847 286 36 0 chr12 118995211 118995435 -25287054 + MIR SINE MIR 2 233 -29 2265 107 0 3 chr12 118995530 118995828 -25286661 + AluSx SINE Alu 9 305 -7 208 324 15 15 chr12 118995834 118995902 -25286587 + MIR SINE MIR 30 97 -111 217 293 123 19 chr12 118995922 118996028 -25286461 - MIR SINE MIR 0 262 146 2315 81 3 0 chr12 118996047 118996330 -25286159 - AluSx SINE Alu -28 284 1 496 254 16 8 chr12 118996331 118996453 -25286036 - MIR SINE MIR -102 160 38 2117 146 0 0 chr12 118996666 118996968 -25285521 - AluSx SINE Alu 0 312 11 210 150 0 0 chr12 118997550 118997590 -25284899 + (GA)n Simple_repeat Simple_repeat 2 41 0 204 260 17 57 chr12 118997628 118997805 -25284684 + (CAGAGA)n Simple_repeat Simple_repeat 6 175 0 2047 150 0 0 chr12 118997805 118998112 -25284377 + AluJb SINE Alu 1 307 -5 291 261 54 15 chr12 118998184 118998314 -25284175 + (CAGAGA)n Simple_repeat Simple_repeat 4 138 0 912 130 0 0 chr12 118998351 118998482 -25284007 + FLAM_C SINE Alu 1 131 -2 490 259 59 6 chr12 118998849 118999019 -25283470 + MER117 DNA MER1_type 18 196 -1 295 161 48 0 chr12 118999055 118999117 -25283372 - MER115 DNA AcHobo -24 669 605 2105 141 23 0 chr12 118999128 118999433 -25283056 + AluJo SINE Alu 1 312 0 2259 111 7 0 chr12 118999462 118999768 -25282721 + AluSx SINE Alu 1 308 -4 345 247 0 26 chr12 119000133 119000210 -25282279 + L2 LINE L2 3197 3271 -1 2235 139 18 6 chr12 119000244 119000583 -25281906 - MER61A LTR ERV1 0 343 1 685 229 40 6 chr12 119000659 119000834 -25281655 - L2 LINE L2 -243 3070 2890 1387 145 0 0 chr12 119000835 119001035 -25281454 + AluSx SINE Alu 2 201 -111 521 246 62 22 chr12 119001068 119001247 -25281242 - L2 LINE L2 -411 2903 2718 228 191 222 0 chr12 119001248 119001311 -25281178 - L2 LINE L2 -704 2610 2534 1055 176 172 27 chr12 119001311 119001634 -25280855 + Tigger7 DNA MER2_type 1 2491 0 518 259 38 25 chr12 119001638 119001796 -25280693 - L2 LINE L2 -783 2531 2372 2164 81 47 3 chr12 119001833 119002129 -25280360 + AluSg SINE Alu 1 309 -1 2348 200 43 2 chr12 119002382 119002892 -25279597 + MER119 DNA MER1_type 3 533 -50 2036 130 10 23 chr12 119002916 119003217 -25279272 - AluSx SINE Alu -15 297 1 2107 131 0 25 chr12 119003230 119003544 -25278945 - AluSx SINE Alu -6 306 1 1928 83 8 0 chr12 119003827 119004067 -25278422 + AluJo SINE Alu 63 304 -8 869 109 8 23 chr12 119004314 119004442 -25278047 - FLAM_C SINE Alu -7 126 1 2084 132 30 0 chr12 119004781 119005084 -25277405 + AluSx SINE Alu 1 312 0 3029 150 30 79 chr12 119005170 119005696 -25276793 - MER21A LTR ERV1 -28 903 353 2076 107 7 0 chr12 119005696 119005967 -25276522 - AluSx SINE Alu -19 293 21 3029 150 30 79 chr12 119005967 119006381 -25276108 - MER21A LTR ERV1 -578 353 66 2414 102 0 0 chr12 119006381 119006684 -25275805 + AluSp SINE Alu 1 303 -10 3029 150 30 79 chr12 119006684 119006747 -25275742 - MER21A LTR ERV1 -865 66 1 2160 134 0 3 chr12 119006826 119007132 -25275357 - AluSx SINE Alu -7 305 1 374 239 15 31 chr12 119007204 119007334 -25275155 - MER94 DNA DNA 0 134 7 318 182 0 0 chr12 119007358 119007413 -25275076 + MSTA LTR MaLR 2 56 -372 * 740 71 0 102 chr12 119007410 119007537 -25274952 + MSTA LTR MaLR 313 426 -2 2233 118 3 16 chr12 119007538 119007675 -25274814 + AluSx SINE Alu 1 138 -174 2514 82 0 0 chr12 119007675 119007979 -25274510 + AluSc SINE Alu 1 304 -5 2233 118 3 16 chr12 119007979 119008147 -25274342 + AluSx SINE Alu 138 302 -10 1035 138 6 50 chr12 119008147 119008328 -25274161 + AluSg/x SINE Alu 132 304 -6 704 319 41 21 chr12 119008469 119008858 -25273631 - L1ME3A LINE L1 -219 5951 5555 727 218 62 32 chr12 119008860 119009294 -25273195 - MLT1D LTR MaLR 0 505 3 2258 97 20 13 chr12 119009372 119009672 -25272817 - AluSx SINE Alu -10 302 1 794 316 92 33 chr12 119009706 119010098 -25272391 - L2 LINE L2 -22 3250 2836 624 171 98 16 chr12 119010125 119010248 -25272241 + FLAM_C SINE Alu 1 133 0 1724 158 4 0 chr12 119010271 119010536 -25271953 + AluJb SINE Alu 42 307 -5 22 35 0 0 chr12 119010590 119010619 -25271870 + AT_rich Low_complexity Low_complexity 1 29 0 2183 122 3 0 chr12 119010764 119011059 -25271430 + AluSx SINE Alu 1 296 -16 984 84 0 0 chr12 119011174 119011320 -25271169 + AluSp/q SINE Alu 167 312 0 292 198 27 81 chr12 119011325 119011436 -25271053 - L1ME3 LINE L1 -15 6147 6043 294 29 0 0 chr12 119011448 119011483 -25271006 + (TC)n Simple_repeat Simple_repeat 2 36 0 248 0 31 0 chr12 119011482 119011514 -25270975 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 1825 160 14 0 chr12 119011514 119011795 -25270694 - AluSx SINE Alu -27 285 1 2159 124 0 0 chr12 119012162 119012487 -25270002 - AluSx SINE Alu 0 312 1 23 33 0 0 chr12 119012494 119012524 -25269965 + AT_rich Low_complexity Low_complexity 1 30 0 1624 147 90 29 chr12 119012524 119012826 -25269663 + AluJb SINE Alu 1 312 0 375 248 20 0 chr12 119012832 119012933 -25269556 - L1MC4a LINE L1 -1927 5881 5779 417 254 92 15 chr12 119013410 119013540 -25268949 - MIR SINE MIR -12 250 111 230 204 153 6 chr12 119013575 119013677 -25268812 - MIR SINE MIR -57 151 29 * 241 200 138 62 chr12 119013674 119013754 -25268735 + L2 LINE L2 3187 3272 0 1093 287 77 67 chr12 119013765 119013917 -25268572 - L2 LINE L2 -9 3304 3155 2034 125 10 0 chr12 119013917 119014213 -25268276 + AluSx SINE Alu 1 299 -13 1093 287 77 67 chr12 119014213 119014584 -25267905 - L2 LINE L2 -158 3155 2789 1054 181 0 0 chr12 119014584 119014750 -25267739 + FRAM SINE Alu 1 166 0 1093 287 77 67 chr12 119014750 119015358 -25267131 - L2 LINE L2 -524 2789 2161 2302 116 0 0 chr12 119015440 119015742 -25266747 + AluSx SINE Alu 3 304 -8 1059 164 6 23 chr12 119016250 119016427 -25266062 + AluJo SINE Alu 124 297 -15 1792 123 160 12 chr12 119016467 119016792 -25265697 - THE1C LTR MaLR -2 373 1 284 256 13 13 chr12 119017015 119017093 -25265396 + L2 LINE L2 3194 3271 -1 2024 163 0 0 chr12 119017141 119017441 -25265048 - AluSx SINE Alu -12 300 1 1301 173 40 33 chr12 119017441 119017635 -25264854 - MLT1E1 LTR MaLR -371 261 95 2505 69 0 10 chr12 119017635 119017938 -25264551 - AluY SINE Alu -11 300 1 1301 173 40 33 chr12 119017938 119018034 -25264455 - MLT1E1 LTR MaLR -537 95 1 1156 143 0 26 chr12 119018037 119018226 -25264263 + MLT1F LTR MaLR 62 245 -297 * 1256 247 158 48 chr12 119018220 119018579 -25263910 + Zaphod DNA AcHobo 61 379 -3652 1852 143 4 0 chr12 119018579 119018838 -25263651 + AluSx SINE Alu 1 260 -52 1256 247 158 48 chr12 119018838 119018921 -25263568 + Zaphod DNA AcHobo 379 452 -3579 2428 211 87 18 chr12 119018921 119019476 -25263013 + MLT1E LTR MaLR 1 593 0 1256 247 158 48 chr12 119019476 119019506 -25262983 + Zaphod DNA AcHobo 452 586 -3445 2168 146 0 0 chr12 119019509 119019818 -25262671 + AluSx SINE Alu 1 309 -3 271 256 16 83 chr12 119019827 119019948 -25262541 + MER115 DNA AcHobo 578 690 -3 558 239 0 74 chr12 119020121 119020284 -25262205 - MER45A DNA AcHobo -11 167 17 430 223 14 14 chr12 119020424 119020563 -25261926 - MER113 DNA MER1_type? -377 144 6 757 177 28 39 chr12 119020984 119021165 -25261324 + L1MB8 LINE L1 5999 6177 -1 360 266 55 16 chr12 119021316 119021444 -25261045 - MLT1H LTR MaLR -271 278 146 515 257 63 31 chr12 119021960 119022182 -25260307 - L2 LINE L2 -213 3059 2831 531 246 70 12 chr12 119022202 119022373 -25260116 + MLT2F LTR ERVL 6 186 -477 548 229 174 0 chr12 119022400 119022618 -25259871 + MLT2F LTR ERVL 406 661 -2 1060 290 79 12 chr12 119022700 119023104 -25259385 + MLT1J2 LTR MaLR 2 432 -18 800 240 16 47 chr12 119023107 119023155 -25259334 + MER113 DNA MER1_type? 64 112 -409 2678 52 0 0 chr12 119023155 119023460 -25259029 - AluY SINE Alu -6 305 1 2386 99 13 0 chr12 119023463 119023766 -25258723 - AluSx SINE Alu -5 307 1 800 240 16 47 chr12 119023766 119024030 -25258459 + MER113 DNA MER1_type? 114 370 -151 2190 129 10 0 chr12 119024158 119024467 -25258022 - AluSx SINE Alu 0 312 1 842 235 64 107 chr12 119024473 119024639 -25257850 - L1MC5 LINE L1 -48 7913 7741 2072 134 20 3 chr12 119024639 119024938 -25257551 - AluJo SINE Alu -8 304 1 842 235 64 107 chr12 119024938 119024986 -25257503 - L1MC5 LINE L1 -220 7741 7692 2466 88 0 0 chr12 119024986 119025283 -25257206 - AluSc SINE Alu -10 299 3 842 235 64 107 chr12 119025283 119025366 -25257123 - L1MC5 LINE L1 -269 7692 7607 2461 71 10 3 chr12 119025366 119025675 -25256814 + AluSp SINE Alu 1 311 -2 842 235 64 107 chr12 119025675 119025823 -25256666 - L1MC5 LINE L1 -354 7607 7454 1285 209 141 68 chr12 119025823 119026270 -25256219 + MLT1H LTR MaLR 1 414 -135 1818 158 7 0 chr12 119026270 119026587 -25255902 + AluJb SINE Alu 1 312 0 2369 89 10 0 chr12 119026589 119026892 -25255597 + AluSp SINE Alu 1 306 -7 1285 209 141 68 chr12 119026892 119026953 -25255536 + MLT1H LTR MaLR 414 549 0 842 235 64 107 chr12 119026953 119027130 -25255359 - L1MC5 LINE L1 -507 7454 7315 204 184 20 20 chr12 119027258 119027307 -25255182 - L2 LINE L2 -212 3060 3012 468 333 6 0 chr12 119027563 119027737 -25254752 + MER117 DNA MER1_type 15 189 -8 2146 133 0 0 chr12 119027855 119028149 -25254340 - AluSx SINE Alu -18 294 1 1163 299 10 18 chr12 119028179 119028563 -25253926 + LTR16A LTR ERVL 61 441 -9 471 191 111 0 chr12 119028569 119028695 -25253794 + MER112 DNA MER1_type 73 212 -48 805 255 75 85 chr12 119028759 119029183 -25253306 - MLT1L LTR MaLR -2 613 194 2370 111 3 0 chr12 119029240 119029546 -25252943 + AluSx SINE Alu 1 307 -5 438 36 0 0 chr12 119029579 119029635 -25252854 + (TG)n Simple_repeat Simple_repeat 2 57 0 198 247 235 25 chr12 119030336 119030417 -25252072 + MER5A DNA MER1_type 50 147 -42 650 204 189 49 chr12 119030429 119030714 -25251775 - L1MC4 LINE L1 -9 8033 7709 2177 129 0 7 chr12 119030775 119031077 -25251412 - AluSx SINE Alu -12 300 1 316 139 0 42 chr12 119031145 119031217 -25251272 + (TTCTCC)n Simple_repeat Simple_repeat 4 72 0 353 207 110 0 chr12 119031217 119031299 -25251190 - FLAM SINE Alu -1 132 42 314 206 0 0 chr12 119031302 119031370 -25251119 - L1MC4 LINE L1 -468 7574 7507 1318 121 11 0 chr12 119031827 119032017 -25250472 + AluSg/x SINE Alu 118 309 -1 440 273 0 0 chr12 119032140 119032239 -25250250 - MIR SINE MIR -105 157 59 1039 169 0 0 chr12 119032239 119032399 -25250090 - AluJo/FRAM SINE Alu -16 296 137 1467 192 80 0 chr12 119032399 119032675 -25249814 - AluJo SINE Alu -14 298 1 199 264 0 69 chr12 119032677 119032749 -25249740 - MIR3 SINE MIR -140 68 2 411 189 27 0 chr12 119032920 119032994 -25249495 + MIR SINE MIR 22 97 -165 451 293 85 39 chr12 119033065 119033324 -25249165 + LTR33 LTR ERVL 108 378 -143 1983 111 14 11 chr12 119033325 119033630 -25248859 - AluSx SINE Alu 0 306 1 715 227 55 0 chr12 119033639 119033802 -25248687 - MIR SINE MIR -11 251 80 813 257 29 5 chr12 119034015 119034225 -25248264 + MIR SINE MIR 47 261 -1 562 242 37 106 chr12 119034605 119034878 -25247611 - L2 LINE L2 -20 3293 3040 851 92 0 0 chr12 119034953 119035073 -25247416 + MER51A LTR ERV1 1 120 -514 655 227 49 34 chr12 119035218 119035451 -25247038 + MIR SINE MIR 8 252 -10 28 0 0 0 chr12 119035548 119035576 -25246913 + AT_rich Low_complexity Low_complexity 1 28 0 2247 55 0 61 chr12 119035628 119035939 -25246550 - AluY SINE Alu -19 292 1 1157 60 0 0 chr12 119035939 119036073 -25246416 - AluY SINE Alu -177 134 1 543 167 0 0 chr12 119036112 119036208 -25246281 + MIR SINE MIR 121 216 -46 2235 133 0 3 chr12 119036266 119036574 -25245915 - AluSx SINE Alu -5 307 1 1683 174 7 7 chr12 119036576 119036863 -25245626 - AluJo SINE Alu -15 297 11 4247 76 9 4 chr12 119037016 119037567 -25244922 - MER41A LTR ERV1 0 554 1 408 245 70 28 chr12 119038170 119038313 -25244176 - MIR SINE MIR -2 260 112 473 230 111 7 chr12 119038315 119038450 -25244039 + MLT1J LTR MaLR 1 149 -362 568 213 6 22 chr12 119038698 119038881 -25243608 + CT-rich Low_complexity Low_complexity 1 180 0 670 195 20 28 chr12 119038903 119039230 -25243259 + CT-rich Low_complexity Low_complexity 1 324 0 861 159 0 0 chr12 119039232 119039408 -25243081 - FLAM_C SINE Alu 0 176 1 2129 102 38 0 chr12 119039632 119039925 -25242564 - AluSx SINE Alu -8 304 1 358 162 0 0 chr12 119039926 119039994 -25242495 + L1MB8 LINE L1 6111 6178 0 322 305 126 13 chr12 119040171 119040322 -25242167 - MIR SINE MIR -18 244 77 397 280 103 46 chr12 119040795 119041013 -25241476 - MIR SINE MIR -1 261 35 313 266 142 35 chr12 119041054 119041283 -25241206 + L2 LINE L2 2778 3036 -277 2145 142 0 0 chr12 119041319 119041621 -25240868 + AluSx SINE Alu 1 302 -10 290 263 11 42 chr12 119041648 119041743 -25240746 - L2 LINE L2 -60 3253 3162 250 261 0 87 chr12 119041918 119042010 -25240479 + L2 LINE L2 3140 3223 -49 537 189 0 168 chr12 119042033 119042218 -25240271 - MIR SINE MIR 0 262 109 1782 121 4 0 chr12 119042218 119042450 -25240039 - AluSq SINE Alu -80 233 1 1019 135 4 15 chr12 119042511 119042950 -25239539 + (GGAA)n Simple_repeat Simple_repeat 3 256 0 212 349 0 0 chr12 119043491 119043554 -25238935 - MIR SINE MIR -16 246 184 294 258 0 79 chr12 119043595 119043684 -25238805 + MIR3 SINE MIR 78 159 -49 214 245 0 0 chr12 119043658 119043711 -25238778 - MIR SINE MIR -147 115 63 * 288 195 289 8 chr12 119043827 119043955 -25238534 + MER117 DNA MER1_type 34 197 0 2374 125 0 0 chr12 119044191 119044503 -25237986 - AluSx SINE Alu 0 312 1 2046 138 0 10 chr12 119044505 119044803 -25237686 - AluJo SINE Alu -16 296 2 471 262 15 11 chr12 119044808 119044955 -25237534 + MIR SINE MIR 42 190 -18 344 264 99 8 chr12 119045105 119045226 -25237263 - MIR SINE MIR -129 133 2 21 36 0 0 chr12 119045545 119045573 -25236916 + AT_rich Low_complexity Low_complexity 1 28 0 2290 98 0 3 chr12 119045573 119045858 -25236631 - AluSx SINE Alu -22 290 7 350 283 53 0 chr12 119046347 119046519 -25235970 - L1M4 LINE L1 -2946 3200 3073 2268 106 10 10 chr12 119046533 119046698 -25235791 - AluSx SINE Alu -11 301 134 2284 93 3 7 chr12 119046698 119047008 -25235481 - AluSx SINE Alu 0 312 1 2268 106 10 10 chr12 119047008 119047143 -25235346 - AluSx SINE Alu -177 135 1 861 231 14 52 chr12 119047868 119048000 -25234489 + MIR SINE MIR 33 156 -106 2061 121 6 62 chr12 119048000 119048323 -25234166 + AluSx SINE Alu 1 305 -7 861 231 14 52 chr12 119048323 119048402 -25234087 + MIR SINE MIR 156 236 -26 1736 155 10 27 chr12 119048414 119048710 -25233779 + AluJo SINE Alu 2 292 -20 256 175 0 88 chr12 119048766 119048823 -25233666 - Charlie8 DNA MER1_type -2252 165 114 443 224 65 130 chr12 119048826 119048969 -25233520 - MIR SINE MIR -25 237 86 2135 100 7 0 chr12 119048969 119049240 -25233249 + AluSq SINE Alu 1 273 -40 443 224 65 130 chr12 119049240 119049289 -25233200 - MIR SINE MIR -176 86 62 497 204 18 9 chr12 119049289 119049402 -25233087 - MER81 DNA DNA 0 114 1 443 224 65 130 chr12 119049402 119049454 -25233035 - MIR SINE MIR -200 62 8 666 206 7 0 chr12 119049577 119049718 -25232771 + MIR SINE MIR 114 255 -7 282 29 0 0 chr12 119049727 119049762 -25232727 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2221 140 13 0 chr12 119049768 119050076 -25232413 - AluSx SINE Alu 0 312 1 1389 179 56 77 chr12 119050137 119050461 -25232028 + MER77 LTR ERV1 276 592 -13 500 151 143 10 chr12 119050704 119050836 -25231653 - MIR SINE MIR -61 147 22 2431 88 3 19 chr12 119051252 119051570 -25230919 - AluSq SINE Alu 0 313 1 662 212 7 53 chr12 119051667 119051736 -25230753 + MIR SINE MIR 119 190 -72 2238 127 7 0 chr12 119051736 119052036 -25230453 + AluSx SINE Alu 1 302 -10 662 212 7 53 chr12 119052036 119052117 -25230372 + MIR SINE MIR 190 262 0 2383 85 3 23 chr12 119052336 119052643 -25229846 + AluSx SINE Alu 1 301 -11 483 213 191 38 chr12 119052650 119052833 -25229656 - MLT1J LTR MaLR -74 437 227 862 266 96 4 chr12 119052892 119053163 -25229326 - LTR16A1 LTR ERVL -2 455 160 312 212 70 123 chr12 119053344 119053412 -25229077 - MLT1J LTR MaLR -320 158 109 2347 122 0 0 chr12 119053412 119053724 -25228765 - AluSx SINE Alu 0 312 1 312 212 70 123 chr12 119053724 119053811 -25228678 - MLT1J LTR MaLR -369 109 19 899 118 39 0 chr12 119054145 119054272 -25228217 + AluJb SINE Alu 179 310 -2 2272 110 10 0 chr12 119054277 119054585 -25227904 + AluSx SINE Alu 1 311 -1 717 291 102 55 chr12 119054749 119055237 -25227252 - LTR33 LTR ERVL 0 521 11 792 126 0 31 chr12 119055320 119055447 -25227042 - FLAM_C SINE Alu -10 123 1 2380 86 0 0 chr12 119055538 119055829 -25226660 + AluY SINE Alu 6 296 -15 881 240 52 35 chr12 119055855 119056142 -25226347 - L1ME3A LINE L1 -5 6165 5874 2141 124 6 13 chr12 119056331 119056511 -25225978 - AluSq SINE Alu 0 313 134 1592 95 183 4 chr12 119056511 119056773 -25225716 - AluSg1 SINE Alu 0 309 1 2141 124 6 13 chr12 119056773 119056907 -25225582 - AluSq SINE Alu -179 134 1 1596 180 53 7 chr12 119056988 119057272 -25225217 + AluJb SINE Alu 1 297 -15 2315 103 0 13 chr12 119057272 119057584 -25224905 + AluSq SINE Alu 1 308 -5 287 301 0 49 chr12 119057997 119058010 -25224479 - L1ME3A LINE L1 -437 5684 5672 2136 131 0 3 chr12 119058010 119058307 -25224182 + AluSx SINE Alu 1 296 -16 287 301 0 49 chr12 119058307 119058416 -25224073 - L1ME3A LINE L1 -449 5672 5568 2228 142 0 0 chr12 119058489 119058800 -25223689 - AluSx SINE Alu -1 311 1 263 314 0 0 chr12 119058891 119058961 -25223528 - MIR SINE MIR -81 127 58 4033 89 4 0 chr12 119058997 119059549 -25222940 - MER41A LTR ERV1 0 554 1 528 86 0 0 chr12 119059849 119059919 -25222570 + AluSc SINE Alu 183 252 -57 2096 147 0 7 chr12 119060195 119060501 -25221988 - AluSx SINE Alu -8 304 1 347 248 55 18 chr12 119060634 119060743 -25221746 - LTR67 LTR ERVL 0 557 445 2226 138 0 0 chr12 119061707 119062011 -25220478 - AluJo SINE Alu -7 305 2 413 284 66 56 chr12 119062424 119062824 -25219665 - MLT1L LTR MaLR -10 605 168 313 256 171 23 chr12 119063564 119063693 -25218796 + MIR SINE MIR 14 161 -101 379 253 164 7 chr12 119063704 119063850 -25218639 + MER46C DNA MER2_type 77 245 -93 1635 114 12 135 chr12 119063954 119064295 -25218194 - AluSx SINE Alu -3 299 1 188 83 0 28 chr12 119064727 119064763 -25217726 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr12 119065307 119065328 -25217161 + GC_rich Low_complexity Low_complexity 1 21 0 1753 125 44 27 chr12 119065475 119065771 -25216718 + AluJb SINE Alu 1 301 -11 205 102 34 34 chr12 119065810 119065869 -25216620 + A-rich Low_complexity Low_complexity 2 60 0 413 213 71 55 chr12 119066844 119067001 -25215488 - MIR SINE MIR -21 241 72 991 276 111 37 chr12 119067387 119067684 -25214805 - MLT1L LTR MaLR -2 613 269 2386 114 0 0 chr12 119067684 119067992 -25214497 - AluSx SINE Alu -4 308 1 991 276 111 37 chr12 119067992 119068154 -25214335 - MLT1L LTR MaLR -346 269 120 577 254 98 45 chr12 119068219 119068527 -25213962 - MLT1J2 LTR MaLR -16 434 72 2323 85 4 0 chr12 119068653 119068959 -25213530 + AluSq SINE Alu 1 307 0 278 299 0 73 chr12 119069070 119069207 -25213282 + L2 LINE L2 2925 3051 -221 846 266 86 90 chr12 119069331 119069875 -25212614 - MLT1K LTR MaLR -10 578 37 424 282 206 0 chr12 119069953 119070123 -25212366 - MIR SINE MIR -5 257 53 2211 104 3 20 chr12 119070456 119070754 -25211735 - AluSx SINE Alu -19 293 1 474 249 139 12 chr12 119071183 119071356 -25211133 - MIR SINE MIR -20 242 48 183 80 0 0 chr12 119072440 119072465 -25210024 + (T)n Simple_repeat Simple_repeat 1 25 0 2339 115 0 6 chr12 119072476 119072788 -25209701 - AluSq SINE Alu -3 310 1 2014 131 30 3 chr12 119072987 119073284 -25209205 - AluSx SINE Alu -7 305 1 489 179 4 213 chr12 119073325 119073565 -25208924 - MER91B DNA MER1_type 0 190 1 2373 107 3 0 chr12 119073764 119074074 -25208415 - AluSq SINE Alu -2 311 1 2319 112 3 0 chr12 119074270 119074575 -25207914 - AluSq SINE Alu -3 310 5 655 177 69 34 chr12 119074722 119074897 -25207592 - MER3 DNA MER1_type -20 189 9 357 232 84 11 chr12 119074899 119074994 -25207495 + MER58A DNA MER1_type 3 104 -3 1234 158 169 15 chr12 119075038 119075298 -25207191 - AluSg SINE Alu 0 300 1 2292 104 0 3 chr12 119075310 119075618 -25206871 - AluSg1 SINE Alu -2 307 1 386 247 10 21 chr12 119075697 119075794 -25206695 - MER5A DNA MER1_type -80 109 14 2217 109 3 0 chr12 119076018 119076377 -25206112 + AluSx SINE Alu 1 360 0 812 269 37 34 chr12 119077237 119077505 -25204984 - MLT1I LTR MaLR -2 407 139 2223 112 10 0 chr12 119077505 119077799 -25204690 - AluSx SINE Alu -15 297 1 324 299 10 10 chr12 119077906 119078003 -25204486 - MLT1I LTR MaLR -303 106 10 300 239 211 0 chr12 119078064 119078173 -25204316 + L2 LINE L2 2921 3052 -220 422 227 99 14 chr12 119078199 119078340 -25204149 - LTR33 LTR ERVL 0 521 369 345 286 49 76 chr12 119078527 119078712 -25203777 + L2 LINE L2 3122 3301 -12 2269 118 39 32 chr12 119078734 119078765 -25203724 - MSTA LTR MaLR -19 409 380 2071 129 3 19 chr12 119078765 119079082 -25203407 - AluSx SINE Alu 0 312 1 2269 118 39 32 chr12 119079082 119079456 -25203033 - MSTA LTR MaLR -48 380 1 710 321 75 30 chr12 119079481 119079773 -25202716 + L2 LINE L2 2717 2994 -278 1962 103 45 41 chr12 119079773 119080064 -25202425 - AluSx SINE Alu -20 292 1 710 321 75 30 chr12 119080064 119080310 -25202179 + L2 LINE L2 2994 3272 0 2321 123 7 0 chr12 119080939 119081249 -25201240 - AluSx SINE Alu 0 312 1 216 0 0 0 chr12 119081457 119081481 -25201008 + (TG)n Simple_repeat Simple_repeat 2 25 0 2337 120 0 0 chr12 119081735 119082034 -25200455 - AluSx SINE Alu -13 299 1 378 261 62 23 chr12 119082205 119082335 -25200154 - MLT1L LTR MaLR -332 283 149 341 222 111 0 chr12 119082341 119082431 -25200058 + MER58 DNA MER1_type 1 100 -241 343 169 31 0 chr12 119082450 119082515 -25199974 + MER58 DNA MER1_type 2353 2419 -1 712 98 27 0 chr12 119082523 119082635 -25199854 + FLAM_A SINE Alu 20 134 -8 1952 106 75 20 chr12 119082635 119082927 -25199562 + AluSx SINE Alu 1 308 -4 297 151 0 0 chr12 119083658 119083711 -25198778 + A-rich Low_complexity Low_complexity 1 53 0 235 317 69 0 chr12 119083711 119083812 -25198677 + Charlie8 DNA MER1_type 95 202 -2215 254 293 122 49 chr12 119083940 119084104 -25198385 + MLT1L LTR MaLR 220 395 -220 2025 141 0 0 chr12 119084167 119084451 -25198038 - AluSx SINE Alu -8 304 21 6860 49 2 30 chr12 119084505 119085367 -25197122 - SVA Other Other 0 1386 549 21 57 0 0 chr12 119085393 119085428 -25197061 + GC_rich Low_complexity Low_complexity 1 35 0 5629 73 27 54 chr12 119085433 119086904 -25195585 - SVA Other Other -518 868 57 695 53 21 0 chr12 119086904 119086999 -25195490 + (GGGAGA)n Simple_repeat Simple_repeat 1 97 0 358 160 53 0 chr12 119088009 119088084 -25194405 - MLT1L LTR MaLR 0 615 537 1166 177 17 58 chr12 119088093 119088283 -25194206 - L1MD3 LINE L1 -1 7994 7819 2204 116 3 0 chr12 119088283 119088575 -25193914 - AluSq SINE Alu -20 293 1 1166 177 17 58 chr12 119088575 119088678 -25193811 - L1MD3 LINE L1 -176 7819 7713 261 329 0 0 chr12 119089160 119089239 -25193250 + L2 LINE L2 1868 1946 -1368 2533 76 0 0 chr12 119089330 119089634 -25192855 - AluY SINE Alu -7 304 1 413 132 0 13 chr12 119089678 119089754 -25192735 + (TTCC)n Simple_repeat Simple_repeat 1 75 0 404 146 0 73 chr12 119089754 119089836 -25192653 - AluSc SINE Alu -3 296 221 696 297 48 4 chr12 119089845 119090114 -25192375 - L1ME3 LINE L1 -20 6142 5862 1596 264 52 76 chr12 119090115 119090318 -25192171 - MER20B DNA MER1_type -24 759 553 1182 196 9 0 chr12 119090318 119090537 -25191952 - MER58A DNA MER1_type -3 221 1 1596 264 52 76 chr12 119090537 119090819 -25191670 - MER20B DNA MER1_type -230 553 266 1730 151 15 7 chr12 119090819 119091090 -25191399 - AluJb SINE Alu -9 303 31 1596 264 52 76 chr12 119091090 119091145 -25191344 - MER20B DNA MER1_type -517 266 211 2118 135 0 22 chr12 119091145 119091464 -25191025 + AluSx SINE Alu 1 312 0 1596 264 52 76 chr12 119091464 119091696 -25190793 - MER20B DNA MER1_type -572 211 4 537 247 82 85 chr12 119092650 119093134 -25189355 - MLT1K LTR MaLR -46 542 11 301 322 24 38 chr12 119093367 119093501 -25188988 + MER5A DNA MER1_type 1 148 -41 181 283 189 0 chr12 119093541 119093594 -25188895 + L2 LINE L2 3210 3272 0 605 86 0 0 chr12 119093640 119093721 -25188768 - AluJ/FRAM SINE Alu -16 296 216 580 216 46 26 chr12 119093741 119093935 -25188554 - L1M4 LINE L1 -2680 3466 3269 2171 121 0 45 chr12 119094003 119094317 -25188172 + AluSx SINE Alu 1 300 -12 617 268 67 0 chr12 119094616 119094780 -25187709 + MER96 DNA MER1_type 1 175 0 36 23 0 0 chr12 119094904 119094947 -25187542 + AT_rich Low_complexity Low_complexity 1 43 0 1642 151 84 35 chr12 119094947 119095231 -25187258 + AluJb SINE Alu 3 300 -12 1830 197 15 70 chr12 119095235 119095407 -25187082 - L1MA9 LINE L1 -38 6274 6094 2310 102 0 16 chr12 119095407 119095711 -25186778 - AluSx SINE Alu -13 299 1 1830 197 15 70 chr12 119095711 119095890 -25186599 - L1MA9 LINE L1 -218 6094 5959 2399 103 0 3 chr12 119095890 119096200 -25186289 - AluSx SINE Alu -3 309 1 1830 197 15 70 chr12 119096200 119096374 -25186115 - L1MA9 LINE L1 -353 5959 5777 338 201 28 62 chr12 119096388 119096495 -25185994 - L1MC4 LINE L1 -1339 6983 1995 2371 102 0 0 chr12 119096514 119096808 -25185681 - AluSx SINE Alu -18 294 1 1466 165 0 4 chr12 119096810 119097059 -25185430 - L1MA9 LINE L1 -534 5778 5531 466 293 93 52 chr12 119097099 119097473 -25185016 - L1MC4 LINE L1 -9 8033 7503 875 175 112 48 chr12 119097473 119097679 -25184810 + MER20 DNA MER1_type 1 219 0 466 293 93 52 chr12 119097679 119097862 -25184627 - L1MC4 LINE L1 -539 7503 7329 470 296 85 25 chr12 119098397 119098596 -25183893 - MIR SINE MIR -1 261 51 221 358 45 0 chr12 119098698 119098765 -25183724 + MIR SINE MIR 5 74 -188 804 201 4 0 chr12 119098855 119099107 -25183382 + (ATG)n Simple_repeat Simple_repeat 1 253 0 207 139 0 0 chr12 119099524 119099560 -25182929 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 555 120 12 232 chr12 119099588 119099637 -25182852 + MER53 DNA DNA 2 60 -129 2157 109 14 7 chr12 119099637 119099921 -25182568 + AluSx SINE Alu 7 292 -20 555 120 12 232 chr12 119099921 119100112 -25182377 + MER53 DNA DNA 60 189 0 873 275 68 12 chr12 119100172 119100423 -25182066 - MER68 LTR ERV1 -2 560 296 1298 171 5 14 chr12 119100423 119100640 -25181849 + AluJo SINE Alu 1 215 -97 637 120 54 0 chr12 119100679 119100771 -25181718 + AluJo SINE Alu 199 295 -17 697 184 0 0 chr12 119100792 119100906 -25181583 - MER68 LTR ERV1 -276 286 173 423 157 0 0 chr12 119100907 119100977 -25181512 + FLAM_A SINE Alu 1 70 -62 207 0 0 0 chr12 119101044 119101067 -25181422 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1304 164 80 55 chr12 119101071 119101230 -25181259 - AluJo SINE Alu -30 282 112 2512 74 0 3 chr12 119101230 119101529 -25180960 - AluSc SINE Alu -11 298 1 1304 164 80 55 chr12 119101529 119101644 -25180845 - AluJo SINE Alu -200 112 1 319 239 0 14 chr12 119101657 119101728 -25180761 + L2 LINE L2 3242 3311 -2 2243 109 0 0 chr12 119101798 119102133 -25180356 - AluSx SINE Alu 0 335 1 1740 183 14 10 chr12 119102578 119102867 -25179622 - AluJb SINE Alu -20 292 3 2109 114 0 44 chr12 119102878 119103194 -25179295 - AluSx SINE Alu -10 302 1 654 206 75 7 chr12 119103304 119103450 -25179039 + MER58C DNA MER1_type 38 193 -22 403 125 0 0 chr12 119103518 119103582 -25178907 - MER103 DNA DNA -83 83 20 194 281 116 16 chr12 119103777 119103898 -25178591 + L2 LINE L2 2910 3042 -230 2247 110 3 0 chr12 119104298 119104598 -25177891 + AluSx SINE Alu 1 301 -11 404 262 58 39 chr12 119104788 119104994 -25177495 - LTR33 LTR ERVL -297 224 15 203 241 108 72 chr12 119105183 119105266 -25177223 + MIR3 SINE MIR 112 197 -11 2329 97 6 10 chr12 119105306 119105617 -25176872 - AluSx SINE Alu 0 312 3 27 0 0 0 chr12 119105817 119105844 -25176645 + AT_rich Low_complexity Low_complexity 1 27 0 1538 39 11 0 chr12 119105909 119106088 -25176401 - AluSc SINE Alu -128 181 1 408 202 45 0 chr12 119106157 119106246 -25176243 + Charlie8 DNA MER1_type 91 183 -2234 307 181 59 21 chr12 119106630 119106724 -25175765 + MIR3 SINE MIR 93 186 -49 372 276 63 0 chr12 119106826 119106953 -25175536 - L1ME4a LINE L1 -12 6109 5975 717 12 0 0 chr12 119106973 119107055 -25175434 + (TTCC)n Simple_repeat Simple_repeat 2 83 0 1419 173 13 0 chr12 119107056 119107287 -25175202 - AluJb SINE Alu 0 312 79 898 245 170 55 chr12 119107365 119107921 -25174568 - L2 LINE L2 0 3313 2704 328 248 153 22 chr12 119108082 119108219 -25174270 - L1ME4a LINE L1 -1 6120 5966 1956 96 4 50 chr12 119108236 119108517 -25173972 + AluJb SINE Alu 33 300 -12 2112 139 3 7 chr12 119108962 119109272 -25173217 - AluJb SINE Alu -3 309 1 1003 163 0 0 chr12 119109358 119109552 -25172937 + AluSg/x SINE Alu 137 330 0 1731 153 71 17 chr12 119109564 119109858 -25172631 + AluJb SINE Alu 3 312 0 244 250 38 25 chr12 119109858 119109938 -25172551 + MER5A DNA MER1_type 62 142 -47 483 314 37 5 chr12 119109967 119110155 -25172334 - L1ME4a LINE L1 -327 5794 5601 942 168 16 52 chr12 119110179 119110370 -25172119 + MER5A DNA MER1_type 1 184 -5 643 175 49 126 chr12 119110386 119110476 -25172013 - MER3 DNA MER1_type -3 206 111 848 103 0 90 chr12 119110476 119110621 -25171868 + FLAM_C SINE Alu 1 132 -1 643 175 49 126 chr12 119110621 119110753 -25171736 - MER3 DNA MER1_type -98 111 1 1809 124 11 15 chr12 119110771 119111036 -25171453 + AluSx SINE Alu 43 306 -6 447 313 94 0 chr12 119111736 119111896 -25170593 - MIR SINE MIR -11 251 77 300 197 16 0 chr12 119111921 119111982 -25170507 - MLT1J LTR MaLR -19 492 431 1442 124 34 5 chr12 119112000 119112209 -25170280 + AluSg/x SINE Alu 93 307 -5 668 264 71 91 chr12 119112209 119112603 -25169886 - MLT1J LTR MaLR -96 415 30 1217 123 6 0 chr12 119113099 119113278 -25169211 - AluSg/x SINE Alu -3 309 130 2389 91 0 3 chr12 119113280 119113301 -25169188 - AluSx SINE Alu -6 306 286 198 0 0 0 chr12 119113301 119113323 -25169166 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2389 91 0 3 chr12 119113323 119113608 -25168881 - AluSx SINE Alu -26 286 1 780 251 85 4 chr12 119113758 119113993 -25168496 + MIR SINE MIR 9 262 0 201 200 11 133 chr12 119114126 119114216 -25168273 + MIR3 SINE MIR 98 176 -32 1073 139 6 12 chr12 119114338 119114503 -25167986 - AluJb SINE Alu -16 296 133 286 294 0 0 chr12 119114649 119114717 -25167772 + MIR SINE MIR 111 178 -84 738 185 22 39 chr12 119114840 119115018 -25167471 + MER5B DNA MER1_type 1 175 -3 1058 167 16 0 chr12 119115027 119115213 -25167276 - MER5A DNA MER1_type 0 189 1 860 135 0 57 chr12 119115345 119115486 -25167003 + FLAM_C SINE Alu 1 133 0 1822 142 0 36 chr12 119115504 119115785 -25166704 + AluJo SINE Alu 6 276 -36 1652 117 17 8 chr12 119115923 119116162 -25166327 - AluSx SINE Alu -9 303 63 205 311 14 0 chr12 119117171 119117245 -25165244 + MIR SINE MIR 124 198 -64 1288 178 8 116 chr12 119117252 119117409 -25165080 + L1M4 LINE L1 3880 3980 -2166 2171 142 3 0 chr12 119117409 119117718 -25164771 + AluSx SINE Alu 1 310 -2 1288 178 8 116 chr12 119117718 119117915 -25164574 + L1M4 LINE L1 3980 4196 -1950 2435 90 0 0 chr12 119118075 119118375 -25164114 - AluSg SINE Alu -10 300 1 573 194 10 0 chr12 119118439 119118542 -25163947 - MER68 LTR ERV1 -26 536 433 3092 97 48 46 chr12 119118621 119118872 -25163617 - L1MA2 LINE L1 0 6304 6055 844 165 0 0 chr12 119118872 119119005 -25163484 - FLAM_C SINE Alu 0 133 1 3092 97 48 46 chr12 119119005 119119292 -25163197 - L1MA2 LINE L1 -249 6055 5765 183 42 0 0 chr12 119119292 119119316 -25163173 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 2174 130 7 0 chr12 119119316 119119608 -25162881 - AluSq SINE Alu -19 294 1 629 221 68 0 chr12 119119608 119119771 -25162718 - MER68 LTR ERV1 -388 174 1 315 292 66 60 chr12 119119773 119120112 -25162377 + L2 LINE L2 2793 3145 -168 2050 117 33 13 chr12 119120189 119120362 -25162127 - AluSx SINE Alu -6 306 123 2102 134 20 0 chr12 119120362 119120654 -25161835 - AluSx SINE Alu -14 298 1 2050 117 33 13 chr12 119120654 119120780 -25161709 - AluSx SINE Alu -189 123 1 267 286 52 0 chr12 119121020 119121097 -25161392 + L2 LINE L2 3178 3258 -14 246 62 0 0 chr12 119121099 119121131 -25161358 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 383 294 28 14 chr12 119121188 119121331 -25161158 - L2 LINE L2 -213 3059 2915 615 227 23 31 chr12 119121389 119121551 -25160938 - MER106B DNA MER1_type -2 1057 895 1679 169 61 0 chr12 119121551 119121830 -25160659 + AluJb SINE Alu 1 296 -16 615 227 23 31 chr12 119121830 119121906 -25160583 - MER106B DNA MER1_type -164 895 2 245 289 16 51 chr12 119123008 119123205 -25159284 + L1MC/D LINE L1 5710 5901 -220 304 296 153 31 chr12 119123315 119123511 -25158978 + L1MCa LINE L1 1995 2214 -4212 * 330 221 63 100 chr12 119123363 119123553 -25158936 - L1MC5 LINE L1 -209 7752 7570 855 182 57 0 chr12 119123558 119123717 -25158772 + MER20 DNA MER1_type 1 168 -51 289 149 0 54 chr12 119123750 119123824 -25158665 + (GGA)n Simple_repeat Simple_repeat 2 71 0 287 146 18 0 chr12 119124105 119124160 -25158329 + (CA)n Simple_repeat Simple_repeat 1 56 0 515 212 183 22 chr12 119124444 119124581 -25157908 - MER91A DNA MER1_type -36 160 2 303 294 0 0 chr12 119125356 119125656 -25156833 + (TG)n Simple_repeat Simple_repeat 1 300 0 262 185 35 23 chr12 119125657 119125830 -25156659 + (TCTCTG)n Simple_repeat Simple_repeat 6 180 0 224 178 47 16 chr12 119125861 119125990 -25156499 + (TCTCTG)n Simple_repeat Simple_repeat 6 138 0 407 97 0 140 chr12 119126031 119126124 -25156365 - Alu SINE Alu -10 302 223 223 246 0 0 chr12 119126124 119126189 -25156300 + (TCTCTG)n Simple_repeat Simple_repeat 4 68 0 1977 106 0 46 chr12 119126718 119127002 -25155487 - AluSx SINE Alu -13 299 29 507 319 155 28 chr12 119127033 119127465 -25155024 + MLT1K LTR MaLR 24 510 -78 1825 164 65 0 chr12 119127467 119127760 -25154729 - AluJb SINE Alu 0 312 1 548 273 33 29 chr12 119128796 119129038 -25153451 + LTR16A LTR ERVL 112 354 -96 23 0 0 0 chr12 119129328 119129351 -25153138 + AT_rich Low_complexity Low_complexity 1 23 0 664 206 39 44 chr12 119129361 119129541 -25152948 - MIR SINE MIR -13 249 71 250 264 23 46 chr12 119129694 119129781 -25152708 - MER91B DNA MER1_type -5 185 101 448 301 32 0 chr12 119129797 119129920 -25152569 - MER91B DNA MER1_type -62 128 2 584 262 27 43 chr12 119129959 119130034 -25152455 + MIR SINE MIR 9 84 -178 2099 116 0 17 chr12 119130034 119130326 -25152163 - AluSx SINE Alu -9 303 17 584 262 27 43 chr12 119130326 119130437 -25152052 + MIR SINE MIR 84 192 -70 695 291 44 5 chr12 119131014 119131217 -25151272 + MIR SINE MIR 46 256 -6 1900 140 0 18 chr12 119131224 119131535 -25150954 - AluSx SINE Alu 0 306 1 234 62 0 0 chr12 119131623 119131655 -25150834 + (CA)n Simple_repeat Simple_repeat 2 33 0 348 224 15 82 chr12 119131845 119131979 -25150510 + L1ME4a LINE L1 5629 5753 -368 1986 146 3 3 chr12 119131994 119132296 -25150193 - AluJb SINE Alu -10 302 1 212 226 36 71 chr12 119132421 119132505 -25149984 - MER5B DNA MER1_type -22 156 76 398 281 150 13 chr12 119132510 119132663 -25149826 - MER91B DNA MER1_type -16 174 1 309 325 113 10 chr12 119132787 119132981 -25149508 + L1ME4a LINE L1 5908 6121 0 3403 146 22 25 chr12 119133408 119133531 -25148958 + L1MB7 LINE L1 5571 5693 -491 2320 127 0 0 chr12 119133531 119133839 -25148650 + AluSx SINE Alu 1 308 -4 3403 146 22 25 chr12 119133839 119134317 -25148172 + L1MB7 LINE L1 5693 6170 -14 1986 125 14 4 chr12 119134317 119134623 -25147866 - AluSx SINE Alu 0 309 1 1245 120 6 11 chr12 119134790 119134965 -25147524 + AluSq SINE Alu 1 174 -139 291 54 0 0 chr12 119134965 119135002 -25147487 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 1819 188 3 0 chr12 119135279 119135577 -25146912 + AluJb SINE Alu 1 299 -13 468 251 135 86 chr12 119135793 119136155 -25146334 + L1ME4a LINE L1 5402 5781 -340 496 216 47 26 chr12 119136217 119136407 -25146082 + L1ME4a LINE L1 5926 6119 -2 814 179 13 148 chr12 119137299 119137528 -25144961 - MIR SINE MIR -52 210 13 771 261 58 70 chr12 119138396 119138559 -25143930 + L2 LINE L2 2921 3085 -228 1798 167 0 7 chr12 119138559 119138853 -25143636 + AluJo SINE Alu 6 297 -15 771 261 58 70 chr12 119138853 119139087 -25143402 + L2 LINE L2 3085 3313 0 581 239 80 71 chr12 119139084 119139322 -25143167 - MIR SINE MIR -3 259 20 * 2196 116 7 0 chr12 119139400 119139702 -25142787 + AluSx SINE Alu 2 305 -7 2192 112 27 0 chr12 119139702 119139996 -25142493 + AluSx SINE Alu 1 302 -10 243 222 111 0 chr12 119140434 119140524 -25141965 - L2 LINE L2 -302 2970 2871 315 198 123 0 chr12 119141225 119141306 -25141183 + MIR SINE MIR 102 192 -70 327 156 28 39 chr12 119141854 119141914 -25140575 - MLT1D LTR MaLR 0 505 446 1945 145 14 24 chr12 119141914 119142211 -25140278 - AluJo SINE Alu -17 295 2 327 156 28 39 chr12 119142211 119142298 -25140191 - MLT1D LTR MaLR -59 446 311 2030 131 0 7 chr12 119142839 119143121 -25139368 - AluSx SINE Alu -32 280 1 288 300 75 33 chr12 119143702 119143942 -25138547 + HAL1 LINE L1 1287 1536 -971 648 222 85 7 chr12 119144053 119144206 -25138283 + MIR SINE MIR 28 192 -70 1955 146 0 38 chr12 119144230 119144546 -25137943 + AluJb SINE Alu 8 311 -1 326 215 0 0 chr12 119144747 119144812 -25137677 + L1ME3A LINE L1 6104 6168 -2 660 252 108 0 chr12 119144979 119145193 -25137296 - L1ME2 LINE L1 -2 6162 5926 844 220 27 15 chr12 119145211 119145462 -25137027 - L1MD3 LINE L1 -1 7929 7514 270 73 0 0 chr12 119145491 119145532 -25136957 + (CA)n Simple_repeat Simple_repeat 2 42 0 2356 94 0 0 chr12 119145840 119146137 -25136352 - AluSx SINE Alu -15 297 1 561 266 29 29 chr12 119146893 119147066 -25135423 + MIR SINE MIR 90 262 0 2390 75 0 0 chr12 119147127 119147431 -25135058 + AluSc SINE Alu 1 304 0 346 358 7 13 chr12 119147900 119148051 -25134438 + MIR SINE MIR 48 197 -65 209 292 0 0 chr12 119148064 119148112 -25134377 - MIR SINE MIR -1 261 214 582 181 0 18 chr12 119148191 119148515 -25133974 + (TG)n Simple_repeat Simple_repeat 1 318 0 249 198 0 0 chr12 119148502 119148583 -25133906 + (TGAG)n Simple_repeat Simple_repeat 2 82 0 * 760 269 39 13 chr12 119148827 119149061 -25133428 - MIR SINE MIR -21 241 2 808 216 19 38 chr12 119149625 119149838 -25132651 - MER20 DNA MER1_type -7 212 4 256 343 41 47 chr12 119149955 119150124 -25132365 + MIR SINE MIR 15 182 -80 1793 130 48 24 chr12 119150278 119150570 -25131919 - AluJo SINE Alu -13 299 1 2132 96 3 0 chr12 119150806 119151097 -25131392 - AluSx SINE Alu -16 296 5 942 165 96 27 chr12 119151202 119151390 -25131099 - MER20 DNA MER1_type -3 216 16 376 298 26 0 chr12 119151511 119151625 -25130864 + L2 LINE L2 3153 3269 -3 234 211 202 26 chr12 119151657 119151771 -25130718 + L2 LINE L2 3168 3301 -12 447 179 0 104 chr12 119152072 119152178 -25130311 + MER117 DNA MER1_type 102 196 -1 443 264 241 65 chr12 119152678 119153201 -25129288 - MLT1L LTR MaLR 0 615 1 2136 114 0 0 chr12 119153283 119153580 -25128909 + AluSx SINE Alu 1 297 -15 239 204 0 0 chr12 119153605 119153649 -25128840 + MER103 DNA DNA 44 87 -79 243 221 83 39 chr12 119153649 119153817 -25128672 - MIR SINE MIR -1 261 23 569 308 9 32 chr12 119154029 119154250 -25128239 + L2 LINE L2 3097 3312 -1 1472 143 241 14 chr12 119154269 119154618 -25127871 + MSTA LTR MaLR 1 428 0 994 225 42 151 chr12 119155304 119155602 -25126887 - L2 LINE L2 -1 3312 2983 2339 73 3 0 chr12 119155602 119155905 -25126584 - AluSc SINE Alu -5 304 1 1600 143 26 42 chr12 119155907 119156215 -25126274 - AluJo SINE Alu -9 303 1 994 225 42 151 chr12 119156215 119156371 -25126118 - L2 LINE L2 -331 2982 2905 873 264 60 55 chr12 119156436 119156871 -25125618 - L1ME4a LINE L1 -81 6040 5604 340 285 54 39 chr12 119156978 119157108 -25125381 + L1ME4a LINE L1 5974 6105 -16 29 0 0 0 chr12 119157308 119157337 -25125152 + AT_rich Low_complexity Low_complexity 1 29 0 851 154 0 0 chr12 119157429 119157565 -25124924 - AluJo SINE Alu -176 136 1 584 151 0 0 chr12 119157588 119157674 -25124815 + MER8 DNA MER2_type 1 86 -153 436 169 0 0 chr12 119157674 119157739 -25124750 - Tigger2 DNA MER2_type -2653 65 1 1779 140 19 25 chr12 119157788 119158102 -25124387 - AluJo SINE Alu 0 312 1 258 267 103 9 chr12 119158112 119158228 -25124261 - L1ME LINE L1 -302 5819 5693 513 323 32 0 chr12 119158301 119158487 -25124002 + MIR SINE MIR 71 262 0 523 299 6 17 chr12 119159151 119159328 -25123161 - MIR SINE MIR 0 262 88 905 231 60 20 chr12 119159442 119159693 -25122796 + LTR16B LTR ERVL 124 384 -80 1792 146 32 23 chr12 119159703 119159890 -25122599 - AluJb SINE Alu 0 312 119 189 0 0 0 chr12 119159890 119159911 -25122578 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1792 146 32 23 chr12 119159911 119160032 -25122457 - AluJb SINE Alu -193 119 1 881 119 8 8 chr12 119160037 119160171 -25122318 - AluJo SINE Alu -178 134 1 372 186 10 62 chr12 119160173 119160270 -25122219 + LTR16B LTR ERVL 367 458 -6 187 365 0 16 chr12 119160276 119160339 -25122150 - MIR SINE MIR -195 67 6 486 259 19 0 chr12 119160482 119160590 -25121899 + MIR SINE MIR 83 192 -70 198 0 0 0 chr12 119160655 119160677 -25121812 + (CA)n Simple_repeat Simple_repeat 2 23 0 311 313 109 41 chr12 119160741 119161035 -25121454 - MLT1J LTR MaLR -3 508 195 207 0 0 0 chr12 119161516 119161539 -25120950 + (A)n Simple_repeat Simple_repeat 1 23 0 319 291 100 21 chr12 119161551 119161698 -25120791 - L1ME4a LINE L1 -1 6117 1188 558 281 113 31 chr12 119161712 119162103 -25120386 - L1ME4a LINE L1 -208 5913 5491 3271 118 23 34 chr12 119162286 119162357 -25120132 - L1MB3 LINE L1 0 6183 6113 1876 104 24 37 chr12 119162357 119162654 -25119835 + AluSx SINE Alu 1 293 -19 3271 118 23 34 chr12 119162654 119163141 -25119348 - L1MB3 LINE L1 -70 6113 5631 2422 241 51 18 chr12 119163283 119163856 -25118633 - MLT1G1 LTR MaLR -1 594 3 454 260 74 128 chr12 119163860 119164226 -25118263 - MLT1G1-int LTR MaLR -3 1368 1023 298 366 32 27 chr12 119164381 119164567 -25117922 - MLT1G1-int LTR MaLR -487 884 698 2156 107 0 3 chr12 119164764 119165063 -25117426 - AluSq SINE Alu -15 298 1 1556 180 198 31 chr12 119165126 119165478 -25117011 - L1MD3 LINE L1 -361 5805 5632 2769 157 38 22 chr12 119165478 119165975 -25116514 - MLT1D LTR MaLR 0 505 1 1556 180 198 31 chr12 119165975 119166157 -25116332 - L1MD3 LINE L1 -534 5632 5482 1701 229 79 9 chr12 119166158 119166590 -25115899 - MLT1C LTR MaLR 0 467 6 1402 194 38 24 chr12 119166590 119167045 -25115444 - L1MD3 LINE L1 -743 5403 5040 975 161 86 0 chr12 119167129 119167303 -25115186 - MER46A DNA MER2_type 0 236 48 2223 88 0 7 chr12 119167465 119167762 -25114727 - AluSg SINE Alu -15 295 1 6157 67 22 67 chr12 119167777 119167790 -25114699 - SVA Other Other -520 1386 1374 207 0 0 0 chr12 119167790 119167813 -25114676 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 6157 67 22 67 chr12 119167813 119169686 -25112803 - SVA Other Other -532 1374 88 180 0 0 0 chr12 119169686 119169706 -25112783 + (GGGAGA)n Simple_repeat Simple_repeat 4 23 0 6157 67 22 67 chr12 119169706 119169791 -25112698 - SVA Other Other -1818 88 1 264 172 103 23 chr12 119169810 119169897 -25112592 - L1MD3 LINE L1 -1079 5067 4974 * 3121 210 40 25 chr12 119169895 119170709 -25111780 + L1M4 LINE L1 4078 4904 -1242 2653 185 20 26 chr12 119170749 119171333 -25111156 - L1M4 LINE L1 -844 5302 4722 556 294 103 53 chr12 119171366 119171648 -25110841 - MLT1G1-int LTR MaLR -769 602 307 999 218 38 45 chr12 119171820 119172176 -25110313 - MLT1G LTR MaLR -271 324 1 3266 157 62 9 chr12 119172311 119172953 -25109536 - MER63C DNA MER1_type 0 930 255 246 147 0 0 chr12 119172956 119172990 -25109499 - MER63D DNA MER1_type -718 343 310 540 133 109 70 chr12 119172997 119173125 -25109364 + AluJo SINE Alu 86 218 -94 361 211 0 0 chr12 119173241 119173331 -25109158 - MER63D DNA MER1_type -923 138 49 786 186 0 0 chr12 119173338 119173462 -25109027 - FLAM_C SINE Alu -9 124 1 1035 226 78 0 chr12 119173571 119173814 -25108675 - MIR SINE MIR 0 262 1 1764 159 0 17 chr12 119173894 119174196 -25108293 + AluJb SINE Alu 1 297 -15 426 297 135 5 chr12 119174225 119174417 -25108072 - MIR SINE MIR -32 230 14 660 284 123 5 chr12 119175110 119175314 -25107175 + MIR SINE MIR 35 262 0 655 297 55 35 chr12 119175668 119175958 -25106531 + MLT1K LTR MaLR 139 434 -154 285 217 36 48 chr12 119176454 119176537 -25105952 + MLT1L LTR MaLR 1 82 -533 620 235 51 46 chr12 119176560 119176790 -25105699 + MLT1L LTR MaLR 190 337 -174 893 237 5 0 chr12 119176848 119177034 -25105455 - MER58A DNA MER1_type -27 197 11 424 200 13 0 chr12 119177213 119177288 -25105201 - L2 LINE L2 0 3313 3238 348 221 185 69 chr12 119177332 119177631 -25104858 - L2 LINE L2 -212 3060 2719 1906 122 45 0 chr12 119177832 119178119 -25104370 - AluSx SINE Alu -12 300 1 336 218 242 53 chr12 119178638 119178933 -25103556 - MLT1J LTR MaLR -22 489 210 226 240 49 110 chr12 119179127 119179373 -25103116 - HAL1 LINE L1 -161 2346 2116 2797 184 16 15 chr12 119179375 119179924 -25102565 + L1MC3 LINE L1 7228 7777 -8 866 184 10 51 chr12 119179968 119180164 -25102325 - AluJ SINE Alu -1 311 124 593 218 144 16 chr12 119180164 119180352 -25102137 - HAL1 LINE L1 -387 2120 1909 278 344 11 0 chr12 119180686 119180776 -25101713 - MIR SINE MIR -1 261 171 1830 122 11 24 chr12 119181399 119181715 -25100774 - AluSx SINE Alu 0 312 1 213 244 0 0 chr12 119181786 119181831 -25100658 - L2 LINE L2 -10 3262 3218 757 194 43 56 chr12 119181838 119182070 -25100419 + MER113 DNA MER1_type? 1 229 -292 502 322 0 7 chr12 119182130 119182276 -25100213 - MIR SINE MIR -79 183 39 563 182 127 0 chr12 119183253 119183363 -25099126 - AluJ SINE Alu -177 125 2 200 213 16 0 chr12 119183380 119183441 -25099048 + CT-rich Low_complexity Low_complexity 1 62 0 1117 266 34 59 chr12 119184731 119185140 -25097349 + LTR16C LTR ERVL 93 491 0 354 242 229 7 chr12 119185175 119185328 -25097161 + L2 LINE L2 3117 3303 -10 472 241 21 78 chr12 119185333 119185474 -25097015 + MIR SINE MIR 59 191 -71 425 248 65 26 chr12 119185678 119185831 -25096658 - MLT1L LTR MaLR 0 615 457 642 183 26 9 chr12 119185843 119185958 -25096531 + FLAM_C SINE Alu 2 118 -25 438 261 92 15 chr12 119185974 119186104 -25096385 - MLT1J LTR MaLR -146 365 226 330 254 0 0 chr12 119186212 119186283 -25096206 - MLT1J2 LTR MaLR -308 142 72 1681 143 0 8 chr12 119186285 119186578 -25095911 - AluJb SINE Alu 0 317 27 2608 173 35 2 chr12 119186672 119187124 -25095365 + MLT1C LTR MaLR 1 467 0 1828 129 0 60 chr12 119187159 119187514 -25094975 - AluSx SINE Alu 0 312 1 1706 160 0 57 chr12 119187639 119187957 -25094532 + AluJo SINE Alu 1 300 -12 483 254 109 129 chr12 119188034 119188592 -25093897 - LTR67 LTR ERVL -1 556 10 470 274 110 12 chr12 119188594 119188758 -25093731 - MIR SINE MIR -55 207 28 1518 203 44 7 chr12 119189069 119189365 -25093124 - MLT1H1 LTR MaLR -2 553 247 387 255 11 0 chr12 119189363 119189457 -25093032 - MLT1H1 LTR MaLR -486 104 10 * 906 208 57 10 chr12 119190427 119190619 -25091870 - MER3 DNA MER1_type 0 209 9 1537 237 91 52 chr12 119190771 119191311 -25091178 + MLT1K LTR MaLR 23 583 -5 326 271 57 115 chr12 119191760 119192153 -25090336 + L1ME4a LINE L1 5588 5941 -180 1554 163 50 0 chr12 119192153 119192430 -25090059 + AluJo SINE Alu 1 291 -21 326 271 57 115 chr12 119192430 119192594 -25089895 + L1ME4a LINE L1 5941 6113 -8 1977 135 0 0 chr12 119192673 119192976 -25089513 + AluSx SINE Alu 1 303 -9 742 306 70 0 chr12 119193136 119193365 -25089124 + MIR SINE MIR 15 259 -3 433 183 19 19 chr12 119193398 119193515 -25088974 + L1MB5 LINE L1 5601 5716 -452 292 176 0 0 chr12 119193481 119193532 -25088957 - L1MB4 LINE L1 -35 6145 6095 * 326 127 0 18 chr12 119193637 119193704 -25088785 - L1MB4 LINE L1 -88 6092 6027 425 93 227 13 chr12 119193734 119193809 -25088680 - Tigger2 DNA MER2_type -298 2420 2330 1331 206 26 29 chr12 119193809 119194119 -25088370 + L1MB5 LINE L1 5728 6036 -138 1962 110 17 3 chr12 119194125 119194417 -25088072 - Tigger2a DNA MER2_type -138 296 1 594 336 65 0 chr12 119194581 119194843 -25087646 - L2 LINE L2 -340 2974 2696 949 251 98 4 chr12 119195321 119195556 -25086933 - MLT1I LTR MaLR 0 409 153 403 257 55 130 chr12 119195675 119195928 -25086561 - MIR SINE MIR -12 250 17 1938 142 10 0 chr12 119195939 119196248 -25086241 - AluSx SINE Alu 0 312 1 430 315 107 14 chr12 119196339 119196555 -25085934 + L2 LINE L2 2586 2821 -493 699 228 141 43 chr12 119196934 119197047 -25085442 - L1ME3 LINE L1 0 6162 6061 1801 144 0 29 chr12 119197047 119197353 -25085136 + AluJb SINE Alu 1 297 -15 699 228 141 43 chr12 119197353 119197515 -25084974 - L1ME3 LINE L1 -101 6061 5860 2074 122 0 0 chr12 119197600 119197896 -25084593 + AluSx SINE Alu 1 296 -16 199 328 0 0 chr12 119198587 119198651 -25083838 + L2 LINE L2 3207 3270 -2 297 330 9 9 chr12 119198651 119198766 -25083723 + GA-rich Low_complexity Low_complexity 1 115 0 2039 137 0 0 chr12 119199003 119199302 -25083187 + AluSx SINE Alu 1 299 -13 1998 106 0 56 chr12 119199519 119199839 -25082650 + AluSx SINE Alu 1 302 -10 487 323 27 18 chr12 119200025 119200248 -25082241 - HAL1b LINE L1 -671 677 453 513 224 108 143 chr12 119200362 119200852 -25081637 + MLT1G LTR MaLR 3 475 -67 2116 135 10 0 chr12 119200961 119201258 -25081231 - AluSx SINE Alu -11 301 2 1780 154 11 4 chr12 119201919 119202228 -25080261 - AluJb SINE Alu 0 311 1 2064 147 0 10 chr12 119202542 119202855 -25079634 - AluJo SINE Alu -2 310 1 243 344 62 16 chr12 119203349 119203477 -25079012 - L2 LINE L2 0 3313 3180 306 363 10 10 chr12 119203534 119203636 -25078853 - MIR SINE MIR -91 117 16 651 291 64 9 chr12 119203953 119204173 -25078316 + MIR SINE MIR 31 262 0 246 277 139 58 chr12 119204179 119204316 -25078173 + L2 LINE L2 3115 3262 -10 460 247 27 7 chr12 119204466 119204616 -25077873 - MER103 DNA DNA -11 155 3 589 202 14 138 chr12 119205451 119205669 -25076820 - MIR SINE MIR 0 262 72 1166 187 4 25 chr12 119205747 119205982 -25076507 - L1MB5 LINE L1 -8 6166 5937 267 274 0 0 chr12 119206253 119206315 -25076174 - MIR SINE MIR -112 150 89 320 303 27 109 chr12 119206786 119207007 -25075482 + L1ME4a LINE L1 5848 6050 -71 860 281 58 78 chr12 119207141 119207559 -25074930 - L1ME4a LINE L1 -128 5993 5568 719 176 0 8 chr12 119207559 119207684 -25074805 + FLAM_A SINE Alu 1 124 -9 860 281 58 78 chr12 119207684 119207807 -25074682 - L1ME4a LINE L1 -553 5568 5444 2523 79 0 0 chr12 119207807 119208112 -25074377 - AluY SINE Alu -6 305 1 860 281 58 78 chr12 119208112 119208260 -25074229 - L1ME4a LINE L1 -677 5444 5317 1346 228 49 6 chr12 119208316 119208640 -25073849 - MER46C DNA MER2_type 0 338 1 1830 121 132 51 chr12 119208680 119209051 -25073438 + MSTA LTR MaLR 1 401 -27 263 189 75 0 chr12 119209552 119209605 -25072884 + MSTA LTR MaLR 370 426 -2 2270 116 0 7 chr12 119209627 119209930 -25072559 + AluSq SINE Alu 5 305 -8 624 256 116 5 chr12 119211477 119211684 -25070805 + MLT1K LTR MaLR 18 247 -341 564 273 35 49 chr12 119211716 119212076 -25070413 + MLT1K LTR MaLR 143 443 -145 624 281 171 0 chr12 119212097 119212314 -25070175 - MIR SINE MIR 0 262 9 373 198 121 60 chr12 119212315 119212396 -25070093 - L2 LINE L2 -6 3266 3175 1505 192 47 89 chr12 119212396 119212468 -25070021 - MLT1B LTR MaLR 0 390 317 1835 163 0 7 chr12 119212468 119212778 -25069711 + AluJb SINE Alu 1 308 0 1505 192 47 89 chr12 119212778 119213109 -25069380 - MLT1B LTR MaLR -73 317 2 373 198 121 60 chr12 119213109 119213143 -25069346 - L2 LINE L2 -97 3175 3144 2175 139 0 0 chr12 119213543 119213846 -25068643 + AluSx SINE Alu 1 303 -9 303 350 19 10 chr12 119214158 119214261 -25068228 - L2 LINE L2 -198 3074 2971 1309 189 5 0 chr12 119214327 119214544 -25067945 + AluSg/x SINE Alu 85 302 -10 346 246 33 25 chr12 119214569 119214691 -25067798 - MIR SINE MIR -37 225 103 * 871 287 4 17 chr12 119214685 119214922 -25067567 + MIR SINE MIR 17 250 -12 198 143 0 0 chr12 119214924 119214959 -25067530 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 1259 131 14 23 chr12 119214968 119215189 -25067300 + THE1C LTR MaLR 1 219 -156 264 319 11 0 chr12 119215193 119215287 -25067202 + MIR SINE MIR 160 254 -8 3151 214 15 49 chr12 119215684 119216178 -25066311 + LTR8 LTR ERV1 2 466 -225 180 0 0 0 chr12 119216178 119216198 -25066291 + (CCCCAA)n Simple_repeat Simple_repeat 1 20 0 3151 214 15 49 chr12 119216198 119216417 -25066072 + LTR8 LTR ERV1 466 691 0 379 287 56 21 chr12 119216424 119216567 -25065922 - MIR SINE MIR -13 249 102 2372 204 67 45 chr12 119217673 119218403 -25064086 + L1MC4 LINE L1 7268 8013 -29 1675 144 119 4 chr12 119218408 119218686 -25063803 - AluJo SINE Alu -2 310 1 1766 180 9 25 chr12 119218813 119219014 -25063475 - AluJo SINE Alu 0 312 116 267 31 0 0 chr12 119219014 119219046 -25063443 + (TTG)n Simple_repeat Simple_repeat 1 32 0 1766 180 9 25 chr12 119219046 119219161 -25063328 - AluJo SINE Alu -196 116 1 428 204 28 9 chr12 119219206 119219314 -25063175 - MER103 DNA DNA -19 147 38 187 279 0 0 chr12 119219335 119219378 -25063111 - L2 LINE L2 -19 3294 3252 * 485 256 29 17 chr12 119219377 119219538 -25062951 - MIR SINE MIR -67 141 9 316 173 267 0 chr12 119219560 119219635 -25062854 + MIR SINE MIR 12 106 -156 314 273 40 10 chr12 119219714 119219813 -25062676 - MIR SINE MIR -132 130 29 2422 179 69 81 chr12 119219908 119220298 -25062191 - LTR8A LTR ERV1 -8 719 341 2593 60 3 0 chr12 119220298 119220596 -25061893 - AluSp SINE Alu -14 299 1 2422 179 69 81 chr12 119220596 119220933 -25061556 - LTR8A LTR ERV1 -386 341 1 1226 154 0 24 chr12 119222054 119222262 -25060227 - AluJo SINE Alu -25 287 85 880 205 94 12 chr12 119222375 119222619 -25059870 - LTR33 LTR ERVL -250 271 8 484 178 8 68 chr12 119222636 119222754 -25059735 - MIR SINE MIR -50 212 102 1895 180 0 6 chr12 119222829 119223140 -25059349 + AluJb SINE Alu 1 309 -3 821 265 84 14 chr12 119223167 119223454 -25059035 + MLT1L LTR MaLR 309 615 0 392 268 9 27 chr12 119224054 119224166 -25058323 + MIR SINE MIR 110 219 -43 2398 102 0 13 chr12 119224432 119224746 -25057743 + AluSx SINE Alu 1 310 -2 216 0 0 0 chr12 119224749 119224773 -25057716 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 591 249 73 12 chr12 119224786 119224951 -25057538 + MIR SINE MIR 48 222 -40 2371 102 0 0 chr12 119225188 119225483 -25057006 - AluSx SINE Alu -17 295 1 208 231 0 0 chr12 119225567 119225606 -25056883 + L2 LINE L2 3223 3261 -11 1681 182 46 54 chr12 119225625 119225998 -25056491 - MLT1A2 LTR MaLR -4 370 1 340 219 105 29 chr12 119226165 119226270 -25056219 + MIR SINE MIR 35 147 -61 1032 236 53 42 chr12 119226431 119226787 -25055702 + MLT1K LTR MaLR 200 559 -29 665 279 140 41 chr12 119227108 119227166 -25055323 + MLT1L LTR MaLR 166 217 -398 2306 119 19 32 chr12 119227166 119227535 -25054954 - THE1B LTR MaLR 0 364 1 665 279 140 41 chr12 119227535 119227870 -25054619 + MLT1L LTR MaLR 217 598 -17 311 145 29 29 chr12 119227949 119228018 -25054471 - MLT1K LTR MaLR -7 581 513 1552 191 60 40 chr12 119228050 119228470 -25054019 + L1ME1 LINE L1 5739 6166 0 2188 128 3 3 chr12 119228473 119228777 -25053712 + AluSx SINE Alu 1 304 -8 27 0 0 0 chr12 119228777 119228804 -25053685 + AT_rich Low_complexity Low_complexity 1 27 0 439 210 89 0 chr12 119228809 119228933 -25053556 + L1MB4 LINE L1 5994 6128 -52 460 101 34 45 chr12 119229439 119229528 -25052961 - THE1B LTR MaLR -83 281 194 295 176 15 0 chr12 119229626 119229694 -25052795 + L1MB3 LINE L1 6114 6182 -1 438 165 0 0 chr12 119229694 119229773 -25052716 + GA-rich Low_complexity Low_complexity 1 79 0 904 257 122 36 chr12 119229781 119230143 -25052346 - MLT1K LTR MaLR -110 478 86 601 267 111 48 chr12 119230880 119231370 -25051119 - MLT1L LTR MaLR -16 599 25 1233 249 94 5 chr12 119231436 119231766 -25050723 + LTR16C LTR ERVL 69 439 -52 1557 168 10 125 chr12 119231766 119232159 -25050330 + MER7A DNA MER2_type 1 346 0 1233 249 94 5 chr12 119232159 119232209 -25050280 + LTR16C LTR ERVL 439 483 -8 279 134 10 62 chr12 119232251 119232286 -25050203 + GA-rich Low_complexity Low_complexity 1 36 -56 2133 136 0 7 chr12 119232286 119232595 -25049894 + AluSg SINE Alu 3 309 -1 279 134 10 62 chr12 119232595 119232656 -25049833 + GA-rich Low_complexity Low_complexity 36 92 0 925 224 96 29 chr12 119232900 119233034 -25049455 + MER46C DNA MER2_type 2 126 -212 216 0 0 0 chr12 119233034 119233058 -25049431 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 925 224 96 29 chr12 119233058 119233235 -25049254 + MER46C DNA MER2_type 126 334 -4 488 244 67 8 chr12 119233249 119233368 -25049121 - MIR SINE MIR -108 154 29 1109 233 80 21 chr12 119233390 119233764 -25048725 + MER113 DNA MER1_type? 15 410 -111 2204 147 0 0 chr12 119233869 119234175 -25048314 + AluSx SINE Alu 1 306 -6 586 197 16 8 chr12 119234679 119234806 -25047683 + MLT1I LTR MaLR 243 370 -39 230 278 10 0 chr12 119234925 119235022 -25047467 + CT-rich Low_complexity Low_complexity 3 100 0 2334 111 0 16 chr12 119235029 119235344 -25047145 - AluSx SINE Alu 0 312 3 1642 179 26 0 chr12 119235908 119236181 -25046308 + AluJo SINE Alu 1 280 -32 783 181 0 0 chr12 119236187 119236342 -25046147 + GA-rich Low_complexity Low_complexity 4 158 0 214 190 121 0 chr12 119236461 119236519 -25045970 - MIR SINE MIR -78 130 66 2057 103 0 24 chr12 119236784 119237106 -25045383 - AluSc SINE Alu 0 315 1 2139 113 7 16 chr12 119237108 119237448 -25045041 - AluSq SINE Alu 0 313 1 1500 271 24 47 chr12 119237502 119237717 -25044772 - L1ME3A LINE L1 -221 5949 5731 1790 177 3 20 chr12 119237717 119238022 -25044467 - AluJb SINE Alu -12 300 1 1500 271 24 47 chr12 119238022 119238469 -25044020 - L1ME3A LINE L1 -439 5731 5304 1992 144 20 0 chr12 119238470 119238768 -25043721 + AluJo SINE Alu 1 304 -8 520 319 29 18 chr12 119239654 119239930 -25042559 - MLT1H LTR MaLR -270 279 1 320 258 129 1 chr12 119239930 119239950 -25042539 - MIR SINE MIR -81 127 111 2281 116 3 3 chr12 119239950 119240253 -25042236 - AluSx SINE Alu -5 307 5 320 258 129 1 chr12 119240253 119240343 -25042146 - MIR SINE MIR -97 111 41 898 159 90 50 chr12 119240895 119241019 -25041470 + MIR SINE MIR 28 164 -98 1869 162 10 7 chr12 119241019 119241316 -25041173 + AluJo SINE Alu 1 298 -14 898 159 90 50 chr12 119241316 119241392 -25041097 + MIR SINE MIR 164 236 -26 222 261 250 0 chr12 119241533 119241625 -25040864 - MIR SINE MIR -48 214 100 402 173 25 0 chr12 119241627 119241708 -25040781 + AluJ/FLAM SINE Alu 2 84 -228 319 169 34 0 chr12 119241708 119241767 -25040722 - MIR SINE MIR -151 111 51 408 228 16 73 chr12 119241916 119242039 -25040450 - MIR SINE MIR -118 144 29 223 401 0 12 chr12 119242653 119242820 -25039669 + (TG)n Simple_repeat Simple_repeat 1 165 0 419 356 0 31 chr12 119243438 119243629 -25038860 + MIR SINE MIR 7 191 -71 376 299 10 0 chr12 119243965 119244062 -25038427 + MIR SINE MIR 46 143 -65 211 211 0 0 chr12 119244130 119244168 -25038321 + (ATG)n Simple_repeat Simple_repeat 2 39 0 276 248 0 68 chr12 119244307 119244424 -25038065 + GA-rich Low_complexity Low_complexity 4 112 0 201 74 0 0 chr12 119245124 119245151 -25037338 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 1025 276 68 34 chr12 119245262 119245758 -25036731 - L1ME3A LINE L1 -1147 4999 4487 396 328 79 71 chr12 119245847 119245909 -25036580 - L1ME4a LINE L1 -5 6116 6056 1779 154 10 42 chr12 119245909 119246220 -25036269 + AluJo SINE Alu 3 303 -9 396 328 79 71 chr12 119246220 119246478 -25036011 - L1ME4a LINE L1 -65 6056 5790 1393 244 137 13 chr12 119246478 119246513 -25035976 - LTR33 LTR ERVL -4 517 488 2262 128 0 0 chr12 119246513 119246818 -25035671 - AluSx SINE Alu -7 305 1 1393 244 137 13 chr12 119246818 119247242 -25035247 - LTR33 LTR ERVL -33 488 1 396 328 79 71 chr12 119247242 119247286 -25035203 - L1ME4a LINE L1 -331 5790 5748 384 313 67 40 chr12 119247429 119247661 -25034828 + MIR SINE MIR 3 236 -26 * 1022 190 35 0 chr12 119247642 119247842 -25034647 - MIR SINE MIR -51 211 5 2395 190 50 52 chr12 119249162 119249820 -25032669 - L1MC4 LINE L1 0 8042 7386 330 67 0 0 chr12 119250828 119250873 -25031616 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 22 80 0 0 chr12 119251828 119251878 -25030611 + GC_rich Low_complexity Low_complexity 1 50 0 51 84 0 22 chr12 119251935 119252022 -25030467 + GC_rich Low_complexity Low_complexity 1 83 -92 257 0 30 0 chr12 119252022 119252055 -25030434 + (CGG)n Simple_repeat Simple_repeat 2 35 0 51 84 0 22 chr12 119252055 119252146 -25030343 + GC_rich Low_complexity Low_complexity 83 175 0 32 81 0 0 chr12 119252363 119252437 -25030052 + GC_rich Low_complexity Low_complexity 1 74 0 307 0 23 23 chr12 119252764 119252808 -25029681 + (GGA)n Simple_repeat Simple_repeat 1 44 0 219 88 0 0 chr12 119252912 119252946 -25029543 + (CCG)n Simple_repeat Simple_repeat 1 34 0 298 286 11 11 chr12 119253218 119253309 -25029180 + CT-rich Low_complexity Low_complexity 5 95 0 186 43 0 0 chr12 119254007 119254030 -25028459 + (GA)n Simple_repeat Simple_repeat 2 24 0 212 184 0 0 chr12 119256983 119257021 -25025468 + T-rich Low_complexity Low_complexity 1 38 0 1918 138 54 0 chr12 119257591 119257867 -25024622 - AluSx SINE Alu -5 307 17 2123 139 0 0 chr12 119258058 119258359 -25024130 + AluJo SINE Alu 3 303 -9 440 289 56 22 chr12 119258364 119258617 -25023872 + L2 LINE L2 2753 3029 -284 703 147 70 0 chr12 119258841 119258970 -25023519 - MER58A DNA MER1_type 0 141 4 820 212 24 68 chr12 119259099 119259326 -25023163 + MIR SINE MIR 18 234 -28 429 330 58 6 chr12 119259542 119259715 -25022774 + Charlie8 DNA MER1_type 1 182 -2235 225 212 15 0 chr12 119259735 119259801 -25022688 - L2 LINE L2 -327 2986 2920 1090 165 12 73 chr12 119260514 119260683 -25021806 + MIR SINE MIR 20 171 -91 1864 161 7 20 chr12 119260683 119260987 -25021502 - AluJb SINE Alu -12 300 1 1090 165 12 73 chr12 119260987 119261065 -25021424 + MIR SINE MIR 171 252 -10 26 74 0 0 chr12 119261124 119261178 -25021311 + AT_rich Low_complexity Low_complexity 1 54 0 433 320 108 25 chr12 119261185 119261501 -25020988 - L2 LINE L2 -73 3199 2858 1349 99 6 6 chr12 119261582 119261763 -25020726 + AluSx SINE Alu 1 181 -131 405 259 0 36 chr12 119261763 119261875 -25020614 - MIR SINE MIR -105 157 50 229 343 0 0 chr12 119262012 119262082 -25020407 + LTR16B LTR ERVL 131 200 -264 638 269 128 11 chr12 119262379 119262781 -25019708 + L2 LINE L2 2781 3310 -3 428 267 33 17 chr12 119263384 119263504 -25018985 - L2 LINE L2 0 3313 3192 202 185 0 37 chr12 119263619 119263673 -25018816 + (TTA)n Simple_repeat Simple_repeat 1 52 0 477 315 65 5 chr12 119263750 119263950 -25018539 + MIR SINE MIR 37 248 -14 566 261 53 53 chr12 119264379 119264605 -25017884 - MIR SINE MIR -25 237 12 2382 102 0 0 chr12 119264703 119265008 -25017481 - AluSx SINE Alu -7 305 1 21 57 0 0 chr12 119265382 119265417 -25017072 + AT_rich Low_complexity Low_complexity 1 35 0 572 197 158 0 chr12 119265590 119265742 -25016747 - MIR SINE MIR -71 191 16 445 307 57 32 chr12 119265746 119266314 -25016175 - L2 LINE L2 0 3272 2650 810 197 3 10 chr12 119267137 119267445 -25015044 + (TCCA)n Simple_repeat Simple_repeat 1 305 0 182 205 51 0 chr12 119268043 119268082 -25014407 - MIR SINE MIR -60 148 108 586 327 113 36 chr12 119268224 119268867 -25013622 + L2 LINE L2 2013 2705 -609 1771 91 66 4 chr12 119268912 119269186 -25013303 + L1MA4A LINE L1 6008 6298 -5 2144 205 36 19 chr12 119269300 119269997 -25012492 - L1MEc LINE L1 -3515 2700 2032 227 309 129 10 chr12 119270081 119270275 -25012214 + L2 LINE L2 2828 3044 -228 476 302 0 7 chr12 119270513 119270811 -25011678 + (TG)n Simple_repeat Simple_repeat 1 296 0 482 318 13 0 chr12 119271141 119271295 -25011194 + MIR SINE MIR 107 262 0 189 167 0 0 chr12 119271634 119271670 -25010819 + L2 LINE L2 2937 2972 -341 2439 100 3 0 chr12 119271924 119272234 -25010255 + AluSx SINE Alu 1 311 -1 36 0 0 0 chr12 119272546 119272582 -25009907 + AT_rich Low_complexity Low_complexity 1 36 0 680 223 136 50 chr12 119272588 119272687 -25009802 - MIR SINE MIR -5 257 168 2266 113 0 0 chr12 119272687 119272978 -25009511 - AluSx SINE Alu -21 291 1 680 223 136 50 chr12 119272978 119273098 -25009391 - MIR SINE MIR -94 168 19 219 305 86 0 chr12 119273939 119274044 -25008445 + MIR SINE MIR 33 146 -62 1802 257 75 16 chr12 119274293 119274850 -25007639 - MLT1G1 LTR MaLR -5 590 1 396 111 0 0 chr12 119276579 119276651 -25005838 + (GA)n Simple_repeat Simple_repeat 2 73 0 3023 130 95 0 chr12 119276743 119277249 -25005240 - MER41C LTR ERV1 0 554 1 327 334 174 22 chr12 119278280 119278642 -25003847 + L2 LINE L2 2838 3254 -18 342 0 0 0 chr12 119279230 119279268 -25003221 + (CA)n Simple_repeat Simple_repeat 1 38 0 392 315 81 34 chr12 119279903 119280138 -25002351 + MIR SINE MIR 9 254 -8 181 288 41 41 chr12 119280143 119280216 -25002273 + L2 LINE L2 3238 3310 -3 435 277 144 63 chr12 119280553 119281070 -25001419 - L2 LINE L2 -2 3311 2753 620 241 126 25 chr12 119282315 119282514 -24999975 + MIR SINE MIR 42 260 -2 363 233 209 12 chr12 119282788 119282960 -24999529 + MIR SINE MIR 46 251 -11 624 175 76 6 chr12 119283027 119283198 -24999291 - L1MEd LINE L1 -5298 821 639 521 254 158 0 chr12 119283216 119283381 -24999108 - MER58A DNA MER1_type -30 194 4 2308 114 0 7 chr12 119283381 119283687 -24998802 - AluSx SINE Alu -8 304 1 1052 197 0 0 chr12 119283789 119283972 -24998517 + MER5A DNA MER1_type 1 183 -6 503 242 22 67 chr12 119283988 119284166 -24998323 - L1MEd LINE L1 -5605 514 345 802 214 32 0 chr12 119284232 119284419 -24998070 - L1MEd LINE L1 -5925 194 2 587 317 75 13 chr12 119284779 119285006 -24997483 + MIR SINE MIR 2 242 -20 461 208 19 28 chr12 119285252 119285358 -24997131 + MLT1K LTR MaLR 168 272 -316 206 28 0 83 chr12 119285389 119285425 -24997064 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 2067 122 7 3 chr12 119286875 119287171 -24995318 + AluSx SINE Alu 1 297 -15 232 250 226 9 chr12 119287204 119287319 -24995170 + MIR SINE MIR 105 243 -19 223 365 19 9 chr12 119287416 119287523 -24994966 + L2 LINE L2 2941 3048 -224 375 78 0 0 chr12 119287572 119287623 -24994866 + (TG)n Simple_repeat Simple_repeat 2 52 0 1540 149 63 35 chr12 119287623 119287938 -24994551 - MLT1B LTR MaLR -66 324 1 950 103 0 7 chr12 119288365 119288511 -24993978 + (TTCC)n Simple_repeat Simple_repeat 3 147 0 6118 158 27 16 chr12 119288520 119290398 -24992091 - L1MC1 LINE L1 -17 6316 4421 1498 251 87 24 chr12 119291071 119291566 -24990923 - L1ME3A LINE L1 0 6170 5645 838 184 44 0 chr12 119291570 119291728 -24990761 - MER20 DNA MER1_type -1 218 54 1749 179 17 3 chr12 119291729 119292019 -24990470 + AluJo SINE Alu 1 294 -18 472 152 6 175 chr12 119292019 119292190 -24990299 + MER53 DNA DNA 47 188 -1 294 214 117 43 chr12 119292268 119292408 -24990081 + MER5A DNA MER1_type 4 163 -26 278 323 93 19 chr12 119293703 119293864 -24988625 - MIR SINE MIR -13 249 77 689 224 215 5 chr12 119293957 119294162 -24988327 - MIR SINE MIR -1 261 14 484 184 61 0 chr12 119294459 119294557 -24987932 - MIR SINE MIR -109 153 50 418 291 43 7 chr12 119296195 119296336 -24986153 - L2 LINE L2 -1 3312 3167 289 260 170 30 chr12 119296384 119296436 -24986053 - L2 LINE L2 -469 2845 2802 1912 162 0 10 chr12 119296436 119296733 -24985756 + AluJo SINE Alu 1 294 -18 289 260 170 30 chr12 119296733 119296915 -24985574 - L2 LINE L2 -512 2802 2578 223 158 158 0 chr12 119297459 119297516 -24984973 - MIR SINE MIR -117 145 80 540 242 8 0 chr12 119298003 119298131 -24984358 + MIR SINE MIR 32 160 -102 * 1050 248 72 72 chr12 119298129 119298441 -24984048 + L2 LINE L2 2883 3197 -116 1720 156 27 34 chr12 119298441 119298736 -24983753 + AluJo SINE Alu 1 293 -19 1050 248 72 72 chr12 119298736 119298854 -24983635 + L2 LINE L2 3196 3313 0 216 221 147 15 chr12 119298855 119298923 -24983566 + MIR SINE MIR 186 262 0 319 185 25 49 chr12 119298945 119299026 -24983463 + MIR SINE MIR 104 182 -80 225 175 0 0 chr12 119299560 119299600 -24982889 - LTR67 LTR ERVL -4 553 514 286 221 13 26 chr12 119299612 119299689 -24982800 - LTR67 LTR ERVL -476 81 6 417 292 119 11 chr12 119299880 119300065 -24982424 + LTR16C LTR ERVL 73 277 -214 692 253 55 0 chr12 119301032 119301234 -24981255 - MER20 DNA MER1_type -4 215 3 196 376 0 0 chr12 119301711 119301804 -24980685 - L2 LINE L2 -93 3220 3128 299 217 43 62 chr12 119302032 119302193 -24980296 - L2 LINE L2 -212 3060 2903 609 258 115 10 chr12 119303010 119303219 -24979270 - L2 LINE L2 0 3313 3083 1067 201 31 0 chr12 119303223 119303417 -24979072 - MER63A DNA MER1_type -2 208 9 334 289 96 19 chr12 119303424 119303580 -24978909 - L2 LINE L2 -316 2997 2830 361 323 190 21 chr12 119303626 119303963 -24978526 + L2 LINE L2 2920 3313 0 606 221 37 101 chr12 119304678 119304837 -24977652 + MIR SINE MIR 50 193 -69 839 163 0 0 chr12 119304837 119304960 -24977529 + FLAM_A SINE Alu 1 123 -10 606 221 37 101 chr12 119304960 119305017 -24977472 + MIR SINE MIR 193 252 -10 2326 76 16 38 chr12 119305129 119305446 -24977043 + AluSx SINE Alu 1 310 -2 522 243 103 7 chr12 119305683 119305819 -24976670 + L2 LINE L2 3164 3312 -1 1957 216 79 10 chr12 119305855 119306360 -24976129 + L1MD1 LINE L1 5647 6186 -56 406 219 0 24 chr12 119306362 119306444 -24976045 - AluS SINE Alu -231 81 2 380 76 106 0 chr12 119306444 119306510 -24975979 + L1MD2 LINE L1 6287 6359 0 507 296 41 12 chr12 119306629 119306801 -24975688 - MIR SINE MIR -66 196 20 221 167 79 0 chr12 119307081 119307141 -24975348 - MIR SINE MIR -65 143 95 463 264 34 54 chr12 119307257 119307405 -24975084 + MIR SINE MIR 11 155 -107 536 287 43 88 chr12 119307669 119308218 -24974271 - L2 LINE L2 -223 3049 2531 2169 95 35 3 chr12 119308332 119308616 -24973873 - AluSx SINE Alu -19 293 1 237 276 49 65 chr12 119309048 119309171 -24973318 + MIR SINE MIR 16 136 -126 1021 263 64 15 chr12 119309656 119309998 -24972491 - MLT1C LTR MaLR 0 467 109 437 117 0 0 chr12 119310010 119310070 -24972419 - AluS SINE Alu -257 61 2 347 151 178 0 chr12 119310105 119310178 -24972311 - MLT1C LTR MaLR -376 91 6 323 227 0 0 chr12 119310471 119310537 -24971952 + MIR SINE MIR 118 183 -79 375 274 0 126 chr12 119310771 119310857 -24971632 - MIR SINE MIR -76 186 131 2095 152 0 3 chr12 119310857 119311167 -24971322 - AluJb SINE Alu -3 309 1 375 274 0 126 chr12 119311167 119311255 -24971234 - MIR SINE MIR -131 131 34 200 163 0 102 chr12 119311259 119311308 -24971181 + MIR SINE MIR 101 144 -64 1519 198 7 3 chr12 119312558 119312841 -24969648 - AluJb SINE Alu -20 292 9 274 269 69 54 chr12 119313208 119313228 -24969261 + MIR SINE MIR 14 32 -230 2114 142 0 0 chr12 119313228 119313523 -24968966 + AluJb SINE Alu 1 295 -17 274 269 69 54 chr12 119313523 119313632 -24968857 + MIR SINE MIR 32 145 -117 347 343 42 24 chr12 119313638 119313804 -24968685 + MIR SINE MIR 94 262 0 381 204 43 21 chr12 119314505 119314598 -24967891 - MIR3 SINE MIR -33 175 81 2097 110 14 0 chr12 119314769 119315051 -24967438 + AluSq SINE Alu 23 308 -5 229 270 44 106 chr12 119315915 119316169 -24966320 - L2 LINE L2 -430 2884 2649 2224 119 3 3 chr12 119316169 119316471 -24966018 + AluSx SINE Alu 1 302 -10 229 270 44 106 chr12 119316471 119316509 -24965980 - L2 LINE L2 -665 2649 2610 197 293 35 0 chr12 119317137 119317195 -24965294 + L2 LINE L2 3161 3220 -52 291 321 128 16 chr12 119317200 119317387 -24965102 - L2 LINE L2 -235 3037 2830 372 130 0 0 chr12 119318233 119318302 -24964187 + (TG)n Simple_repeat Simple_repeat 2 70 0 221 303 17 0 chr12 119318434 119318553 -24963936 + (TG)n Simple_repeat Simple_repeat 2 122 0 418 247 21 0 chr12 119319712 119319805 -24962684 + MIR SINE MIR 81 175 -87 532 266 69 37 chr12 119319830 119320048 -24962441 + MIR SINE MIR 32 256 -6 348 333 50 21 chr12 119320601 119320742 -24961747 - MIR SINE MIR -12 250 106 288 260 226 83 chr12 119320739 119320943 -24961546 + MIR SINE MIR 30 262 0 * 243 336 9 71 chr12 119321149 119321262 -24961227 + L2 LINE L2 3207 3312 -1 180 0 0 0 chr12 119321548 119321568 -24960921 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 635 244 49 27 chr12 119321720 119321945 -24960544 - MLT1K LTR MaLR -6 582 353 181 348 93 17 chr12 119322046 119322164 -24960325 + L2 LINE L2 2932 3058 -214 557 250 20 10 chr12 119322518 119322675 -24959814 + MIR SINE MIR 1 150 -63 216 0 0 0 chr12 119323537 119323561 -24958928 + (TG)n Simple_repeat Simple_repeat 1 24 0 733 205 18 24 chr12 119323689 119323855 -24958634 + MIR SINE MIR 28 192 -70 1915 173 0 0 chr12 119323916 119324216 -24958273 - AluJo SINE Alu -12 300 1 737 175 9 0 chr12 119324217 119324331 -24958158 - AluJo/FLAM SINE Alu -186 126 12 1212 211 122 22 chr12 119324377 119324647 -24957842 - AluJo SINE Alu -15 297 1 262 157 398 0 chr12 119325113 119325196 -24957293 - MIR SINE MIR -30 232 117 3070 204 87 15 chr12 119325842 119326646 -24955843 - L1MC4a LINE L1 0 7808 6947 271 322 13 20 chr12 119326649 119326801 -24955688 + CT-rich Low_complexity Low_complexity 3 153 0 1649 217 35 135 chr12 119326802 119327708 -24954781 - L1MC5 LINE L1 -465 7496 6681 1761 148 0 25 chr12 119327925 119328202 -24954287 - AluJo SINE Alu -10 302 33 2406 101 0 0 chr12 119329071 119329377 -24953112 + AluSx SINE Alu 1 306 -6 449 196 319 22 chr12 119329634 119329772 -24952717 - MER5A DNA MER1_type -2 187 9 370 197 130 61 chr12 119331060 119331361 -24951128 - L2 LINE L2 -247 3025 2700 3522 231 22 78 chr12 119331409 119331605 -24950884 - L1ME1 LINE L1 -99 6067 5862 2262 119 0 7 chr12 119331605 119331908 -24950581 - AluSx SINE Alu -11 301 1 3522 231 22 78 chr12 119331908 119333327 -24949162 - L1ME1 LINE L1 -304 5862 4561 2208 97 0 0 chr12 119333327 119333606 -24948883 - AluY SINE Alu -2 309 31 3522 231 22 78 chr12 119333606 119333664 -24948825 - L1ME1 LINE L1 -1605 4561 4501 464 300 124 24 chr12 119333672 119333922 -24948567 + L2 LINE L2 2964 3238 -75 228 67 0 0 chr12 119333956 119333986 -24948503 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 188 351 106 11 chr12 119334987 119335081 -24947408 - MIR3 SINE MIR -104 104 2 1089 221 66 71 chr12 119335226 119335637 -24946852 - MLT1I LTR MaLR 0 409 1 826 241 49 65 chr12 119335700 119335945 -24946544 - MIR SINE MIR -6 256 16 371 214 0 22 chr12 119335932 119336021 -24946468 - MIR SINE MIR -108 154 68 * 1816 184 47 31 chr12 119336166 119336589 -24945900 - MER63B DNA MER1_type -6 430 1 580 183 13 98 chr12 119336783 119336936 -24945553 - MER5B DNA MER1_type 0 178 39 693 197 0 0 chr12 119337154 119337281 -24945208 - MER58B DNA MER1_type -8 333 207 935 125 0 8 chr12 119337372 119337500 -24944989 + FLAM_C SINE Alu 1 127 -6 2337 96 0 0 chr12 119337829 119338120 -24944369 + AluSx SINE Alu 3 293 -19 275 361 8 50 chr12 119338229 119338348 -24944141 + L2 LINE L2 3199 3312 -1 2120 114 50 0 chr12 119339416 119339713 -24942776 - AluSx SINE Alu 0 312 1 2236 125 0 3 chr12 119341232 119341535 -24940954 - AluSx SINE Alu -10 302 1 439 254 152 61 chr12 119341536 119341595 -24940894 - MIR SINE MIR -15 247 195 2003 162 0 0 chr12 119341595 119341885 -24940604 - AluJb SINE Alu -20 292 3 439 254 152 61 chr12 119341885 119342022 -24940467 - MIR SINE MIR -67 195 33 936 150 19 0 chr12 119342031 119342191 -24940298 - L1MB5 LINE L1 0 6174 6012 3564 135 19 49 chr12 119342191 119342687 -24939802 - MER39B LTR ERV1 -1 652 180 1826 150 10 0 chr12 119342687 119342980 -24939509 - L1PA16 LINE L1 -1 6165 5870 3564 135 19 49 chr12 119342980 119343155 -24939334 - MER39B LTR ERV1 -473 180 1 1309 194 48 21 chr12 119343164 119343232 -24939257 - L1MB5 LINE L1 -175 5999 5934 2152 124 3 0 chr12 119343232 119343530 -24938959 - AluSx SINE Alu -13 299 1 1309 194 48 21 chr12 119343530 119343750 -24938739 - L1MB5 LINE L1 -240 5934 5703 343 243 211 20 chr12 119343864 119344016 -24938473 - Charlie8 DNA MER1_type -2216 201 21 1505 199 78 110 chr12 119344028 119344162 -24938327 - MLT2B1 LTR ERVL -8 512 375 2139 110 0 11 chr12 119344162 119344443 -24938046 - AluSx SINE Alu -14 298 21 1505 199 78 110 chr12 119344443 119344837 -24937652 - MLT2B1 LTR ERVL -145 375 1 5539 126 46 20 chr12 119344837 119345736 -24936753 - ERVL-B1 LTR ERVL -7 5757 4830 2435 98 52 6 chr12 119345736 119346084 -24936405 - THE1B LTR MaLR 0 364 1 5539 126 46 20 chr12 119346084 119346137 -24936352 - ERVL-B1 LTR ERVL -934 4830 4780 * 20751 163 47 22 chr12 119346136 119349107 -24933382 - ERVL-B1 LTR ERVL -1787 3977 1083 2850 70 3 6 chr12 119349107 119349462 -24933027 - THE1A LTR MaLR 0 355 2 11952 96 8 6 chr12 119349463 119350609 -24931880 - THE1A-int LTR MaLR 0 1580 429 2364 113 0 3 chr12 119350609 119350919 -24931570 - AluSx SINE Alu -3 309 1 11952 96 8 6 chr12 119350919 119351349 -24931140 - THE1A-int LTR MaLR -1151 429 1 2637 103 11 0 chr12 119351349 119351700 -24930789 - THE1A LTR MaLR 0 355 1 20751 163 47 22 chr12 119351700 119352602 -24929887 - ERVL-B1 LTR ERVL -4680 1084 2 246 54 108 0 chr12 119352603 119352640 -24929849 - ERVL-B1 LTR ERVL 0 515 475 276 30 0 0 chr12 119352640 119352673 -24929816 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr12 119352672 119352701 -24929788 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 546 276 13 13 chr12 119352766 119352922 -24929567 - L2 LINE L2 -179 3093 2938 262 284 29 29 chr12 119353011 119353113 -24929376 - L2 LINE L2 -540 2774 2673 * 403 284 131 39 chr12 119353102 119353384 -24929105 - L2 LINE L2 -18 3295 2988 3001 186 33 10 chr12 119353384 119354013 -24928476 + L1MB5 LINE L1 5500 6139 -35 725 234 184 21 chr12 119354082 119354462 -24928027 - L2 LINE L2 -526 2788 2347 488 274 85 28 chr12 119354613 119354825 -24927664 - MIR SINE MIR -11 251 28 1897 142 23 13 chr12 119354979 119355282 -24927207 - AluJb SINE Alu -2 310 5 287 64 0 21 chr12 119355401 119355448 -24927041 + (TTG)n Simple_repeat Simple_repeat 2 47 0 1770 182 0 28 chr12 119355551 119355870 -24926619 - AluJb SINE Alu -2 310 1 218 176 265 0 chr12 119355980 119356048 -24926441 + MIR SINE MIR 37 122 -86 265 189 0 0 chr12 119356530 119356583 -24925906 + MIR SINE MIR 80 132 -130 664 239 183 41 chr12 119356709 119357103 -24925386 + LTR16A1 LTR ERVL 8 457 0 232 355 19 9 chr12 119357137 119357244 -24925245 + MIR SINE MIR 80 187 -75 475 269 32 2 chr12 119357909 119358071 -24924418 + MIR SINE MIR 18 146 -62 286 257 0 0 chr12 119358819 119358919 -24923570 + MIR SINE MIR 79 179 -29 261 0 0 0 chr12 119359279 119359308 -24923181 + (CA)n Simple_repeat Simple_repeat 2 30 0 244 341 12 0 chr12 119359387 119359472 -24923017 + MIR SINE MIR 75 160 -102 690 229 67 46 chr12 119359493 119359733 -24922756 - MIR SINE MIR 0 262 18 227 329 0 0 chr12 119359747 119359817 -24922672 + L2 LINE L2 3191 3260 -12 2346 92 10 0 chr12 119359856 119360150 -24922339 + AluSx SINE Alu 1 297 -15 212 321 0 93 chr12 119362152 119362292 -24920197 + L2 LINE L2 3177 3303 -10 274 316 133 19 chr12 119362406 119362564 -24919925 + L2 LINE L2 2889 3064 -208 1745 152 14 35 chr12 119363429 119363719 -24918770 - AluJo SINE Alu -28 284 1 2141 103 7 26 chr12 119363720 119363897 -24918592 - AluSg SINE Alu -14 296 126 249 57 0 0 chr12 119363897 119363932 -24918557 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 2141 103 7 26 chr12 119363932 119364056 -24918433 - AluSg SINE Alu -184 126 1 2259 172 12 7 chr12 119364067 119364497 -24917992 - L1MC1 LINE L1 0 6333 5902 236 0 0 0 chr12 119364497 119364524 -24917965 + THE1B LTR MaLR 2 28 -336 232 171 0 0 chr12 119364517 119364558 -24917931 + MLT1B LTR MaLR 342 382 -8 * 238 197 45 0 chr12 119364627 119364693 -24917796 - MIR SINE MIR -98 164 96 497 285 20 13 chr12 119364746 119364897 -24917592 + MIR SINE MIR 4 155 -107 2099 130 3 3 chr12 119364903 119365196 -24917293 + AluSx SINE Alu 1 293 -19 3169 165 42 0 chr12 119366002 119366602 -24915887 + L1MB3 LINE L1 5550 6174 -9 270 254 15 0 chr12 119366606 119366673 -24915816 + (CTA)n Simple_repeat Simple_repeat 1 68 0 2057 128 0 23 chr12 119366765 119367069 -24915420 + AluJo SINE Alu 1 297 -15 285 330 9 27 chr12 119367108 119367220 -24915269 - MIR SINE MIR -138 124 15 875 87 318 0 chr12 119367233 119367406 -24915083 - MER30 DNA MER1_type -1 229 2 1144 132 32 36 chr12 119367434 119367654 -24914835 - MER20 DNA MER1_type 0 219 1 265 149 164 60 chr12 119368164 119368231 -24914258 + L2 LINE L2 3230 3303 -10 228 122 14 108 chr12 119368266 119368340 -24914149 + HAL1b LINE L1 1282 1348 0 2164 111 7 3 chr12 119370055 119370375 -24912114 + AluSx SINE Alu 1 312 0 570 291 114 0 chr12 119370458 119370695 -24911794 - Charlie8 DNA MER1_type -2153 264 1 222 118 0 0 chr12 119371273 119371307 -24911182 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 531 242 0 23 chr12 119371308 119371377 -24911112 - L2 LINE L2 -25 3288 3222 1626 185 51 15 chr12 119371377 119371712 -24910777 - MER7A DNA MER2_type 0 346 2 531 242 0 23 chr12 119371712 119371774 -24910715 - L2 LINE L2 -91 3222 3160 1574 198 50 19 chr12 119371830 119372208 -24910281 - MLT1B LTR MaLR 0 390 1 405 275 31 44 chr12 119372984 119373144 -24909345 + MIR SINE MIR 51 208 -54 1084 243 8 4 chr12 119373178 119373425 -24909064 + MIR SINE MIR 13 260 -2 188 33 0 33 chr12 119373969 119373999 -24908490 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 2285 103 6 28 chr12 119374747 119375067 -24907422 + AluSq SINE Alu 1 313 0 300 353 0 0 chr12 119375219 119375321 -24907168 + MER117 DNA MER1_type 15 116 -81 272 217 14 29 chr12 119375323 119375392 -24907097 - L2 LINE L2 -2 3311 3244 * 388 317 26 87 chr12 119375391 119375621 -24906868 - L2 LINE L2 -484 2830 2615 821 136 0 15 chr12 119376380 119376512 -24905977 + FLAM_C SINE Alu 4 133 0 28 0 0 0 chr12 119376512 119376540 -24905949 + AT_rich Low_complexity Low_complexity 1 28 0 186 330 0 64 chr12 119376802 119376896 -24905593 + L3 LINE CR1 180 267 -1310 1606 193 0 11 chr12 119377192 119377501 -24904988 - AluJo SINE Alu 0 306 1 23 0 0 0 chr12 119377575 119377598 -24904891 + AT_rich Low_complexity Low_complexity 1 23 0 2331 103 6 6 chr12 119377794 119378106 -24904383 + AluSx SINE Alu 1 312 0 297 192 164 0 chr12 119378126 119378199 -24904290 - L2 LINE L2 0 3313 3229 270 300 6 29 chr12 119378376 119378546 -24903943 + (TG)n Simple_repeat Simple_repeat 2 167 0 190 344 52 13 chr12 119378601 119378755 -24903734 - L2 LINE L2 -469 2845 2686 238 276 78 69 chr12 119378777 119379110 -24903379 - L2 LINE L2 -735 2579 2244 590 242 99 16 chr12 119379581 119379763 -24902726 - MIR SINE MIR -64 198 2 2191 134 0 3 chr12 119379780 119380085 -24902404 - AluJb SINE Alu -6 306 3 420 257 0 10 chr12 119380119 119380220 -24902269 - MIR SINE MIR -103 159 60 520 274 226 24 chr12 119380795 119380815 -24901674 + MIR SINE MIR 8 23 -239 2405 94 0 0 chr12 119380815 119381114 -24901375 + AluSx SINE Alu 1 299 -13 520 274 226 24 chr12 119381114 119381301 -24901188 + MIR SINE MIR 23 257 -5 644 224 42 7 chr12 119381334 119381477 -24901012 - MER58B DNA MER1_type -15 326 179 692 296 36 40 chr12 119381525 119381799 -24900690 + MLT1K LTR MaLR 316 588 0 670 281 5 28 chr12 119381960 119382177 -24900312 + MIR SINE MIR 50 261 -1 2492 103 0 0 chr12 119382345 119382656 -24899833 + AluSx SINE Alu 1 311 -1 252 271 0 0 chr12 119382940 119382999 -24899490 + MER5A DNA MER1_type 128 186 -3 612 237 58 0 chr12 119383012 119383168 -24899321 + MLT1K LTR MaLR 378 542 -46 509 294 0 29 chr12 119383556 119383726 -24898763 + MIR SINE MIR 21 185 -77 719 262 54 0 chr12 119383752 119383920 -24898569 - MER63A DNA MER1_type -33 177 1 1910 163 0 10 chr12 119384066 119384373 -24898116 - AluJo SINE Alu -8 304 1 769 267 67 9 chr12 119384503 119384728 -24897761 - MIR SINE MIR -6 256 19 500 208 135 78 chr12 119385637 119385721 -24896768 - MIR SINE MIR -26 236 158 2154 117 3 0 chr12 119385721 119386043 -24896446 - AluSx SINE Alu 0 325 3 500 208 135 78 chr12 119386043 119386149 -24896340 - MIR SINE MIR -104 158 34 1531 226 62 18 chr12 119387044 119387483 -24895006 + MLT1C LTR MaLR 1 458 -9 2340 88 37 0 chr12 119388209 119388506 -24893983 + AluSp SINE Alu 1 308 -5 186 264 19 0 chr12 119388534 119388587 -24893902 - MIR SINE MIR -159 103 50 702 105 0 0 chr12 119388594 119388699 -24893790 - AluSg/x SINE Alu -1 309 205 342 265 0 0 chr12 119389965 119390082 -24892407 + (TG)n Simple_repeat Simple_repeat 2 118 0 357 234 0 0 chr12 119390131 119390242 -24892247 + (TG)n Simple_repeat Simple_repeat 2 112 0 660 306 72 60 chr12 119391478 119391769 -24890720 - L2 LINE L2 0 3272 2986 826 194 61 11 chr12 119391769 119391949 -24890540 - MER5A DNA MER1_type 0 189 1 660 306 72 60 chr12 119391949 119392365 -24890124 - L2 LINE L2 -286 2986 2556 211 331 33 41 chr12 119392600 119392721 -24889768 - MIR SINE MIR -56 206 87 287 169 15 31 chr12 119392909 119392974 -24889515 - MER116 DNA Mariner -16 64 1 180 0 0 0 chr12 119393393 119393413 -24889076 + (T)n Simple_repeat Simple_repeat 1 20 0 1936 139 23 19 chr12 119394088 119394397 -24888092 - AluJo SINE Alu 0 312 3 589 291 0 8 chr12 119394423 119394598 -24887891 + MIR SINE MIR 34 205 -57 1076 202 34 5 chr12 119394927 119395135 -24887354 - MER20 DNA MER1_type -5 214 1 2251 111 3 0 chr12 119395453 119395742 -24886747 - AluSx SINE Alu -22 290 1 448 305 142 0 chr12 119395846 119396036 -24886453 + MIR SINE MIR 46 262 0 383 235 25 0 chr12 119396672 119396753 -24885736 - L2 LINE L2 -6 3307 3225 472 322 84 38 chr12 119397239 119397478 -24885011 + MIR SINE MIR 11 260 -2 * 539 189 16 16 chr12 119397472 119397594 -24884895 + MIR SINE MIR 74 195 -67 243 0 0 0 chr12 119397645 119397672 -24884817 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2042 115 7 26 chr12 119397729 119398034 -24884455 - AluSx SINE Alu -13 299 1 598 313 38 21 chr12 119400968 119401208 -24881281 - MIR SINE MIR -3 259 16 683 301 18 13 chr12 119401586 119401815 -24880674 + MIR SINE MIR 2 231 -31 428 311 61 42 chr12 119402097 119402361 -24880128 + L1MC4a LINE L1 5496 5764 -2044 321 231 31 115 chr12 119402420 119402550 -24879939 + L1MC4a LINE L1 5727 5845 -1963 1185 156 4 91 chr12 119402591 119402822 -24879667 + AluJo SINE Alu 86 296 -16 2309 69 7 10 chr12 119402833 119403124 -24879365 + AluY SINE Alu 1 290 -21 392 289 30 22 chr12 119403355 119403490 -24878999 + MIR SINE MIR 8 143 -119 269 239 0 33 chr12 119403939 119404119 -24878370 + CT-rich Low_complexity Low_complexity 1 174 0 412 293 36 0 chr12 119404657 119404797 -24877692 + MIR SINE MIR 36 180 -82 2223 136 0 0 chr12 119404834 119405129 -24877360 - AluSx SINE Alu -16 296 2 310 249 41 71 chr12 119405337 119405534 -24876955 + L2 LINE L2 2920 3110 -203 225 200 0 0 chr12 119406196 119406236 -24876253 - L2 LINE L2 -2 3311 3272 636 252 176 38 chr12 119406567 119406993 -24875496 - L2 LINE L2 -314 2999 2521 1871 155 41 0 chr12 119407053 119407344 -24875145 + AluJb SINE Alu 1 303 -9 1208 229 16 52 chr12 119407344 119407710 -24874779 - L1ME3A LINE L1 -125 6045 5693 499 203 250 7 chr12 119407715 119407863 -24874626 - MER5A DNA MER1_type 0 189 6 1397 241 88 10 chr12 119407869 119408322 -24874167 - L1ME3A LINE L1 -477 5685 5191 592 286 30 10 chr12 119409112 119409311 -24873178 + MIR SINE MIR 31 233 -29 1977 130 22 0 chr12 119409347 119409677 -24872812 - AluSx SINE Alu 0 336 1 250 314 14 36 chr12 119409771 119409911 -24872578 + L2 LINE L2 2920 3056 -257 2076 127 0 11 chr12 119410167 119410477 -24872012 - AluSx SINE Alu 0 311 5 1042 248 9 4 chr12 119410735 119410961 -24871528 + Charlie1 DNA MER1_type 1 227 -2534 582 237 7 7 chr12 119410958 119411097 -24871392 + Charlie1 DNA MER1_type 2623 2761 0 * 661 193 28 7 chr12 119412173 119412318 -24870171 + MIR SINE MIR 31 178 -84 705 277 36 29 chr12 119412410 119412688 -24869801 + Charlie8 DNA MER1_type 3 282 -2135 181 260 188 31 chr12 119412729 119412825 -24869664 + L2 LINE L2 3197 3307 -6 2855 211 37 3 chr12 119413900 119414527 -24867962 - L1MB7 LINE L1 -10 6174 5527 803 190 63 44 chr12 119414683 119414888 -24867601 + MER3 DNA MER1_type 1 209 0 656 296 41 10 chr12 119415084 119415320 -24867169 + MIR SINE MIR 1 239 -23 526 220 34 0 chr12 119415443 119415561 -24866928 + L2 LINE L2 3192 3313 0 608 317 121 16 chr12 119416220 119416244 -24866245 - L2 LINE L2 -4 3309 3289 2154 131 3 3 chr12 119416244 119416542 -24865947 + AluSx SINE Alu 1 298 -14 608 317 121 16 chr12 119416542 119417193 -24865296 - L2 LINE L2 -24 3289 2560 363 348 13 13 chr12 119417248 119417403 -24865086 - MIR SINE MIR -106 156 2 193 279 198 0 chr12 119417459 119417545 -24864944 - MIR SINE MIR -112 150 48 218 261 14 0 chr12 119417732 119417801 -24864688 + (TG)n Simple_repeat Simple_repeat 2 71 0 298 221 8 8 chr12 119417820 119417947 -24864542 + (TG)n Simple_repeat Simple_repeat 2 128 0 202 306 0 0 chr12 119419657 119419706 -24862783 + MIR SINE MIR 204 252 -10 321 290 35 19 chr12 119419875 119420037 -24862452 + MIR3 SINE MIR 6 165 -64 303 211 113 0 chr12 119420111 119420182 -24862307 + L2 LINE L2 3194 3272 0 952 255 138 73 chr12 119420621 119421001 -24861488 - L2 LINE L2 0 3313 2959 2342 115 0 0 chr12 119421001 119421306 -24861183 + AluSx SINE Alu 1 305 -7 2085 154 3 3 chr12 119421314 119421626 -24860863 + AluJb SINE Alu 1 312 0 952 255 138 73 chr12 119421626 119421936 -24860553 - L2 LINE L2 -360 2953 2544 272 317 57 24 chr12 119422166 119422289 -24860200 - MIR SINE MIR -120 142 16 190 279 105 58 chr12 119422373 119422459 -24860030 + L2 LINE L2 3115 3204 -68 198 167 0 0 chr12 119422483 119422519 -24859970 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 207 374 0 12 chr12 119422611 119422694 -24859795 + MIR SINE MIR 35 116 -92 330 208 52 26 chr12 119423513 119423590 -24858899 - L2 LINE L2 -6 3307 3229 383 249 107 68 chr12 119423670 119423847 -24858642 - MIR SINE MIR -36 226 43 180 297 16 16 chr12 119423862 119423926 -24858563 + L2 LINE L2 2891 2954 -318 432 281 275 0 chr12 119423926 119424093 -24858396 - L2 LINE L2 0 3313 3101 1700 184 14 0 chr12 119424117 119424394 -24858095 + AluJo SINE Alu 13 293 -19 411 291 93 69 chr12 119424399 119424732 -24857757 + L2 LINE L2 2930 3270 -2 442 273 13 0 chr12 119424823 119425135 -24857354 + (TGGA)n Simple_repeat Simple_repeat 1 316 0 243 255 0 0 chr12 119425482 119425533 -24856956 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 328 360 46 13 chr12 119425868 119426107 -24856382 - L2 LINE L2 -182 3090 2844 215 227 72 11 chr12 119426603 119426697 -24855792 + MIR SINE MIR 58 163 -45 402 312 88 14 chr12 119426700 119426915 -24855574 - MER113 DNA MER1_type? -3 518 288 344 308 24 47 chr12 119427044 119427213 -24855276 + L1ME3 LINE L1 5921 6085 -77 1516 137 22 4 chr12 119427227 119427453 -24855036 + AluJb SINE Alu 61 290 -22 227 343 19 0 chr12 119427526 119427631 -24854858 - MER113 DNA MER1_type? -414 107 1 2079 138 3 16 chr12 119428563 119428867 -24853622 + AluJb SINE Alu 1 300 -12 305 214 14 0 chr12 119429106 119429176 -24853313 + MIR SINE MIR 188 258 -4 2449 74 0 7 chr12 119429655 119429954 -24852535 + AluY SINE Alu 1 297 -14 1519 122 185 0 chr12 119430458 119430696 -24851793 - AluJo SINE Alu -30 282 1 186 189 0 0 chr12 119432204 119432241 -24850248 + T-rich Low_complexity Low_complexity 1 37 0 585 273 25 12 chr12 119434271 119434432 -24848057 + MIR3 SINE MIR 35 197 -11 317 323 128 12 chr12 119434462 119434719 -24847770 + MER102a DNA MER1_type 40 326 -4 369 262 79 16 chr12 119435638 119435764 -24846725 - MER103 DNA DNA -2 164 31 1895 168 0 7 chr12 119436290 119436588 -24845901 + AluJb SINE Alu 8 303 -9 336 303 25 8 chr12 119436601 119436720 -24845769 + MIR3 SINE MIR 85 205 -3 390 271 28 57 chr12 119437576 119437753 -24844736 + MIR SINE MIR 59 230 -32 874 215 20 85 chr12 119437769 119437921 -24844568 + MIR SINE MIR 16 147 -115 2310 100 0 0 chr12 119437921 119438210 -24844279 + AluSx SINE Alu 9 297 -15 874 215 20 85 chr12 119438210 119438304 -24844185 + MIR SINE MIR 147 246 -16 465 276 110 26 chr12 119438522 119438676 -24843813 + MIR SINE MIR 8 188 -74 1860 149 0 90 chr12 119438676 119439019 -24843470 + AluJo SINE Alu 1 312 0 465 276 110 26 chr12 119439019 119439092 -24843397 + MIR SINE MIR 188 254 -8 216 67 0 0 chr12 119439838 119439868 -24842621 + (TG)n Simple_repeat Simple_repeat 1 30 0 381 258 93 20 chr12 119440627 119440778 -24841711 + MIR3 SINE MIR 35 196 -12 256 321 36 12 chr12 119440959 119441043 -24841446 - L2 LINE L2 0 3272 3187 273 304 49 20 chr12 119441156 119441258 -24841231 - L2 LINE L2 -5 3267 3163 509 256 108 11 chr12 119441424 119441688 -24840801 + MLT1H1 LTR MaLR 19 264 -291 294 115 39 0 chr12 119441768 119441820 -24840669 + MLT1H1 LTR MaLR 365 418 -149 263 292 111 42 chr12 119441823 119441967 -24840522 + L2 LINE L2 2908 3061 -252 558 237 15 0 chr12 119442049 119442180 -24840309 - L2 LINE L2 -513 2801 2669 189 0 0 0 chr12 119442568 119442589 -24839900 + (T)n Simple_repeat Simple_repeat 1 21 0 742 296 12 33 chr12 119442844 119442951 -24839538 + MIR SINE MIR 28 136 -126 1491 147 9 0 chr12 119442951 119443175 -24839314 - AluJb SINE Alu -4 308 83 742 296 12 33 chr12 119443175 119443307 -24839182 + MIR SINE MIR 136 262 0 192 297 27 0 chr12 119443340 119443414 -24839075 - MIR SINE MIR -74 188 113 401 228 17 23 chr12 119443505 119443637 -24838852 - MIR SINE MIR -67 141 54 187 318 0 0 chr12 119443887 119443931 -24838558 + L2 LINE L2 3252 3295 -18 1956 110 0 0 chr12 119444040 119444295 -24838194 - AluSx SINE Alu -57 255 1 293 329 0 0 chr12 119445153 119445235 -24837254 - L2 LINE L2 0 3313 3232 261 200 314 0 chr12 119445389 119445494 -24836995 + MIR SINE MIR 48 185 -77 273 361 35 35 chr12 119445869 119446013 -24836476 - L2 LINE L2 -5 3267 3124 322 274 89 7 chr12 119446099 119446234 -24836255 - L2 LINE L2 0 3272 3127 593 235 27 20 chr12 119446258 119446337 -24836152 + MIR SINE MIR 1 83 -179 487 238 57 97 chr12 119446337 119446487 -24836002 + MER8 DNA MER2_type 2 140 -99 2200 115 0 0 chr12 119446487 119446775 -24835714 - AluSx SINE Alu -24 288 1 487 238 57 97 chr12 119446775 119446872 -24835617 + MER8 DNA MER2_type 140 239 0 593 235 27 20 chr12 119446872 119446941 -24835548 + MIR SINE MIR 83 150 -112 305 267 20 10 chr12 119447020 119447121 -24835368 + MIR SINE MIR 137 238 -24 215 301 126 0 chr12 119447477 119447580 -24834909 - MIR3 SINE MIR -78 130 15 1252 184 161 11 chr12 119447671 119447790 -24834699 + AluJo SINE Alu 1 101 -211 1914 167 24 0 chr12 119447790 119448084 -24834405 + AluJb SINE Alu 1 301 -11 1252 184 161 11 chr12 119448084 119448225 -24834264 + AluJo SINE Alu 101 300 -12 216 238 0 0 chr12 119448228 119448291 -24834198 + G-rich Low_complexity Low_complexity 2 64 0 431 244 128 6 chr12 119448417 119448573 -24833916 + MER5A DNA MER1_type 14 188 -1 500 239 98 6 chr12 119448586 119448749 -24833740 - MER5B DNA MER1_type 0 178 1 1799 188 61 40 chr12 119448796 119449078 -24833411 + MER63B DNA MER1_type 1 296 -766 1942 127 15 9 chr12 119449078 119449417 -24833072 - L1MB3 LINE L1 -2 6181 5841 1799 188 61 40 chr12 119449417 119449559 -24832930 + MER63B DNA MER1_type 296 434 -2 344 192 205 0 chr12 119449613 119449691 -24832798 + MER58A DNA MER1_type 1 94 -13 * 488 206 160 36 chr12 119449683 119449877 -24832612 - MER2 DNA MER2_type -7 338 121 1597 118 0 0 chr12 119449877 119450081 -24832408 + AluSc SINE Alu 1 204 -105 630 62 0 0 chr12 119450184 119450265 -24832224 + AluSc SINE Alu 208 288 -21 1774 159 54 7 chr12 119450285 119450580 -24831909 + AluJo SINE Alu 1 309 -3 838 159 0 0 chr12 119450580 119450712 -24831777 - MER2 DNA MER2_type -213 132 1 262 239 104 0 chr12 119450721 119450788 -24831701 + MER58A DNA MER1_type 151 224 0 609 277 113 62 chr12 119450848 119451184 -24831305 - L2 LINE L2 0 3272 2920 260 231 121 11 chr12 119451768 119451859 -24830630 - MIR SINE MIR -122 140 40 627 270 41 36 chr12 119451912 119452216 -24830273 - MLT1J2 LTR MaLR -84 366 4 431 291 91 66 chr12 119452671 119452764 -24829725 + MIR SINE MIR 13 102 -160 2227 137 0 0 chr12 119452764 119453070 -24829419 - AluSx SINE Alu -6 306 1 431 291 91 66 chr12 119453070 119453217 -24829272 + MIR SINE MIR 102 259 -3 2308 119 0 0 chr12 119453492 119453787 -24828702 + AluSg SINE Alu 1 295 -15 579 259 112 16 chr12 119454029 119454238 -24828251 + MIR SINE MIR 33 261 -1 356 346 8 0 chr12 119454378 119454505 -24827984 - MIR SINE MIR -25 237 110 2067 152 3 10 chr12 119454919 119455228 -24827261 + AluJb SINE Alu 1 307 -5 362 313 75 25 chr12 119455336 119455496 -24826993 + L2 LINE L2 2924 3091 -181 516 293 148 41 chr12 119455605 119455914 -24826575 + L2 LINE L2 2646 2920 -393 1035 158 84 0 chr12 119455914 119456116 -24826373 - MER20 DNA MER1_type 0 219 1 516 293 148 41 chr12 119456116 119456408 -24826081 + L2 LINE L2 2920 3310 -3 1059 226 8 16 chr12 119456431 119456674 -24825815 - MIR SINE MIR -11 251 11 315 143 191 0 chr12 119456663 119456726 -24825763 - L2 LINE L2 -10 3303 3229 * 2065 159 0 0 chr12 119456814 119457116 -24825373 + AluSx SINE Alu 1 302 -10 287 238 25 12 chr12 119457119 119457199 -24825290 - MIR SINE MIR -118 144 64 588 264 43 0 chr12 119458105 119458245 -24824244 - MIR SINE MIR -71 191 46 1784 148 92 44 chr12 119459034 119459446 -24823043 - MSTB1 LTR MaLR 0 432 1 328 157 200 0 chr12 119460072 119460142 -24822347 - L2 LINE L2 -1 3312 3229 389 280 131 12 chr12 119460185 119460353 -24822136 - MIR SINE MIR -13 249 62 849 222 134 0 chr12 119460366 119460560 -24821929 + MER58A DNA MER1_type 1 220 -4 2077 103 0 0 chr12 119460583 119460844 -24821645 + AluSx SINE Alu 1 261 -51 2500 67 0 0 chr12 119460845 119460891 -24821598 - L1PA7 LINE L1 -90 6064 6019 927 261 37 21 chr12 119460891 119461180 -24821309 - L1MA1 LINE L1 -275 6027 5739 798 234 136 27 chr12 119461180 119461548 -24820941 - L1MC5 LINE L1 -32 7929 5698 1441 92 0 0 chr12 119461548 119461722 -24820767 - FRAM SINE Alu -5 171 1 407 227 11 11 chr12 119461737 119461825 -24820664 + MER81 DNA DNA 1 88 -26 323 176 0 0 chr12 119461834 119461885 -24820604 + MER81 DNA DNA 59 109 -5 521 130 110 0 chr12 119462144 119462244 -24820245 - FLAM_C SINE Alu -3 140 30 192 196 107 0 chr12 119462495 119462551 -24819938 + MIR SINE MIR 40 101 -107 681 246 41 0 chr12 119462554 119462725 -24819764 - L1MC5 LINE L1 -531 7430 7253 865 98 0 30 chr12 119463306 119463438 -24819051 + AluJ SINE Alu 2 129 -173 1037 158 13 0 chr12 119463522 119463680 -24818809 + AluJ SINE Alu 132 291 -21 628 260 0 19 chr12 119464085 119464239 -24818250 + MIR SINE MIR 13 163 -99 672 142 35 28 chr12 119464268 119464409 -24818080 - MER63 DNA MER1_type -62 774 7 330 250 0 0 chr12 119464410 119464486 -24818003 + MIR SINE MIR 155 230 -32 472 245 87 54 chr12 119464539 119464723 -24817766 - Charlie8 DNA MER1_type -2221 196 7 351 271 28 9 chr12 119465048 119465155 -24817334 - MIR SINE MIR 0 262 154 2025 115 36 23 chr12 119465948 119466252 -24816237 - AluSx SINE Alu -4 308 1 459 281 96 0 chr12 119466780 119466915 -24815574 - Charlie8 DNA MER1_type -2185 232 85 426 129 0 0 chr12 119466951 119467021 -24815468 - L1ME3 LINE L1 -4 6158 6089 562 253 82 6 chr12 119467249 119467431 -24815058 + MIR SINE MIR 21 216 -46 207 0 0 0 chr12 119467452 119467475 -24815014 + (T)n Simple_repeat Simple_repeat 1 23 0 2378 100 0 25 chr12 119467489 119467809 -24814680 - AluSx SINE Alu 0 312 1 1360 189 17 24 chr12 119467809 119468105 -24814384 - L1MC2 LINE L1 -15 6329 6036 210 91 0 0 chr12 119469912 119469945 -24812544 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 1891 126 0 39 chr12 119469962 119470247 -24812242 + AluJo SINE Alu 14 287 -25 589 283 45 0 chr12 119470279 119470477 -24812012 - MIR3 SINE MIR 0 208 2 757 126 0 8 chr12 119470831 119470950 -24811539 + FLAM_C SINE Alu 1 118 -15 189 0 0 0 chr12 119470950 119470971 -24811518 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 1391 262 112 29 chr12 119470974 119471773 -24810716 + L2 LINE L2 2429 3313 0 193 333 16 0 chr12 119471771 119471834 -24810655 - MIR SINE MIR -13 249 186 * 991 112 0 15 chr12 119471947 119472081 -24810408 - AluSq/x SINE Alu -180 132 1 2132 98 46 0 chr12 119472903 119473188 -24809301 - AluSx SINE Alu -14 298 1 395 271 186 14 chr12 119473625 119473835 -24808654 + MIR SINE MIR 16 261 -1 275 282 67 67 chr12 119473931 119474080 -24808409 - L3 LINE CR1 -7 1570 1422 395 328 0 51 chr12 119474691 119474868 -24807621 + MIR SINE MIR 8 175 -87 703 170 3 42 chr12 119475238 119475553 -24806936 + CT-rich Low_complexity Low_complexity 1 302 0 * 767 111 0 53 chr12 119475525 119475715 -24806774 + (TCC)n Simple_repeat Simple_repeat 1 180 0 528 153 0 42 chr12 119475721 119475865 -24806624 + CT-rich Low_complexity Low_complexity 3 140 0 197 322 67 11 chr12 119476136 119476226 -24806263 - MIR SINE MIR -58 204 110 2451 85 0 0 chr12 119476289 119476583 -24805906 + AluSx SINE Alu 8 301 -11 1045 189 0 0 chr12 119476740 119476904 -24805585 - AluJo/FRAM SINE Alu -15 297 134 1511 180 71 37 chr12 119476904 119477083 -24805406 - AluJo SINE Alu -8 304 110 471 18 0 0 chr12 119477083 119477139 -24805350 + (TG)n Simple_repeat Simple_repeat 1 56 0 1511 180 71 37 chr12 119477139 119477253 -24805236 - AluJo SINE Alu -202 110 1 966 220 14 5 chr12 119477316 119477534 -24804955 - MER58A DNA MER1_type 0 224 5 296 235 12 0 chr12 119477549 119477630 -24804859 - MER33 DNA MER1_type 0 324 243 415 141 4 3 chr12 119477633 119477867 -24804622 + AluSx SINE Alu 1 304 -8 944 164 27 86 chr12 119477869 119477967 -24804522 - MER33 DNA MER1_type -2340 245 143 1850 107 12 4 chr12 119477967 119478219 -24804270 + AluSx SINE Alu 37 290 -22 944 164 27 86 chr12 119478219 119478235 -24804254 - MER33 DNA MER1_type -2442 143 128 2552 61 0 0 chr12 119478235 119478530 -24803959 + AluY SINE Alu 2 296 -15 944 164 27 86 chr12 119478530 119478670 -24803819 - MER33 DNA MER1_type -2457 128 5 458 291 91 24 chr12 119479201 119479411 -24803078 + MIR SINE MIR 39 262 0 287 193 0 0 chr12 119479514 119479571 -24802918 - Alu SINE Alu -5 297 241 2059 119 0 14 chr12 119479670 119479976 -24802513 + AluSx SINE Alu 1 302 0 525 231 50 8 chr12 119480223 119480344 -24802145 + L2 LINE L2 3145 3270 -2 2153 144 0 0 chr12 119480431 119480730 -24801759 - AluJo SINE Alu -13 299 1 688 253 94 10 chr12 119480981 119481183 -24801306 - MIR SINE MIR -28 234 16 583 145 89 16 chr12 119481242 119481366 -24801123 + FLAM_C SINE Alu 1 133 0 1851 119 7 70 chr12 119481375 119481711 -24800778 + AluSx SINE Alu 1 317 0 511 241 122 69 chr12 119482290 119482390 -24800099 + L1ME3A LINE L1 5854 5947 -223 1950 189 24 28 chr12 119482390 119482504 -24799985 + L1MB5 LINE L1 5717 5830 -344 2018 112 7 49 chr12 119482504 119482809 -24799680 + AluSx SINE Alu 1 292 -20 1950 189 24 28 chr12 119482809 119483154 -24799335 + L1MB5 LINE L1 5830 6174 0 511 241 122 69 chr12 119483154 119483315 -24799174 + L1ME3A LINE L1 5947 6129 -41 2280 92 0 3 chr12 119483343 119483694 -24798795 - AluSx SINE Alu 0 350 1 208 298 18 0 chr12 119483731 119483788 -24798701 - MIR SINE MIR -58 150 93 1426 223 57 37 chr12 119484071 119484245 -24798244 + MLT1C LTR MaLR 1 170 -297 2131 112 20 3 chr12 119484245 119484541 -24797948 + AluSx SINE Alu 1 301 -11 1426 223 57 37 chr12 119484541 119484824 -24797665 + MLT1C LTR MaLR 170 467 0 374 144 0 0 chr12 119484892 119484965 -24797524 + MER5A DNA MER1_type 4 76 -113 2082 141 6 6 chr12 119484965 119485277 -24797212 + AluJb SINE Alu 1 312 0 267 247 247 0 chr12 119485296 119485393 -24797096 + MER5A DNA MER1_type 61 181 -8 197 186 0 0 chr12 119485479 119485522 -24796967 - MIR SINE MIR -139 123 81 758 253 91 12 chr12 119485615 119485856 -24796633 - MLT1C LTR MaLR -4 463 204 1322 161 127 21 chr12 119485912 119486148 -24796341 - AluJo SINE Alu -51 261 1 448 157 78 20 chr12 119486149 119486251 -24796238 - MLT1C LTR MaLR -316 189 82 1101 153 6 11 chr12 119486263 119486440 -24796049 - AluJb SINE Alu -1 311 136 229 164 0 82 chr12 119486461 119486522 -24795967 - MLT1C LTR MaLR -563 63 8 434 312 29 7 chr12 119487041 119487179 -24795310 + MIR SINE MIR 47 187 -75 203 175 100 0 chr12 119487305 119487345 -24795144 + L2 LINE L2 3262 3305 -8 513 211 15 45 chr12 119487441 119487574 -24794915 - L2 LINE L2 -2 3311 3183 446 323 32 5 chr12 119488900 119489086 -24793403 + MIR SINE MIR 21 211 -51 325 326 186 3 chr12 119489274 119489602 -24792887 - L1ME4a LINE L1 0 6121 5734 458 293 16 69 chr12 119489722 119490002 -24792487 - L1ME4a LINE L1 -720 5442 5174 2185 117 3 0 chr12 119490510 119490813 -24791676 - AluSx SINE Alu 0 306 3 582 298 10 29 chr12 119491287 119491492 -24790997 - MIR SINE MIR -12 250 50 307 281 83 33 chr12 119491833 119491954 -24790535 + MIR SINE MIR 102 228 -34 459 263 44 0 chr12 119491970 119492084 -24790405 - L2 LINE L2 -4 3268 3150 1007 108 16 0 chr12 119492150 119492279 -24790210 - AluSq/x SINE Alu -180 133 3 563 306 65 20 chr12 119492309 119492508 -24789981 + MIR SINE MIR 49 256 -6 204 67 0 0 chr12 119493003 119493033 -24789456 + (A)n Simple_repeat Simple_repeat 1 30 0 846 261 21 93 chr12 119493836 119494124 -24788365 - MER113 DNA MER1_type? -154 367 113 1918 154 0 16 chr12 119494124 119494429 -24788060 + AluJo SINE Alu 3 302 -10 846 261 21 93 chr12 119494429 119494527 -24787962 - MER113 DNA MER1_type? -408 113 9 431 262 24 36 chr12 119494548 119494669 -24787820 + MIR SINE MIR 46 166 -96 2317 80 20 7 chr12 119494669 119494998 -24787491 - AluSg SINE Alu 0 310 1 431 262 24 36 chr12 119494998 119495044 -24787445 + MIR SINE MIR 166 211 -51 379 331 30 0 chr12 119495655 119495788 -24786701 + L2 LINE L2 3136 3272 0 1258 185 4 46 chr12 119495840 119496100 -24786389 - MLT1D LTR MaLR -4 501 253 396 144 67 115 chr12 119496141 119496186 -24786303 - MLT1D LTR MaLR -406 99 53 2083 128 3 16 chr12 119496186 119496491 -24785998 + AluJb SINE Alu 1 301 -11 396 144 67 115 chr12 119496491 119496549 -24785940 - MLT1D LTR MaLR -452 53 1 183 182 0 0 chr12 119496639 119496672 -24785817 - MIR SINE MIR -3 259 227 1375 200 93 27 chr12 119497418 119497593 -24784896 + MLT1C LTR MaLR 1 163 -304 784 241 0 0 chr12 119497593 119497751 -24784738 + FRAM SINE Alu 1 158 -8 2388 94 0 0 chr12 119497753 119498052 -24784437 + AluSc SINE Alu 1 299 -10 2157 133 0 16 chr12 119498053 119498361 -24784128 + AluSx SINE Alu 1 303 -9 1375 200 93 27 chr12 119498361 119498545 -24783944 + MLT1C LTR MaLR 162 389 -78 1591 237 67 7 chr12 119498555 119498985 -24783504 - MLT1C LTR MaLR -6 461 6 359 287 144 6 chr12 119499019 119499193 -24783296 + L2 LINE L2 2538 2735 -579 183 437 0 0 chr12 119499553 119499624 -24782865 + L2 LINE L2 3180 3250 -63 274 276 35 0 chr12 119499737 119499824 -24782665 - MIR SINE MIR -73 189 100 781 242 90 0 chr12 119499824 119500047 -24782442 - LTR16B LTR ERVL -8 456 214 2492 70 0 3 chr12 119500091 119500389 -24782100 + AluY SINE Alu 1 297 -14 2312 112 3 0 chr12 119500396 119500701 -24781788 + AluSq SINE Alu 1 306 -7 745 258 0 0 chr12 119500704 119500867 -24781622 - MLT1B LTR MaLR -35 355 193 2271 103 0 20 chr12 119500982 119501282 -24781207 + AluSx SINE Alu 1 294 -18 432 266 122 51 chr12 119501521 119501735 -24780754 - MIR SINE MIR 0 262 34 1019 119 8 0 chr12 119501787 119501921 -24780568 - AluSq/x SINE Alu -177 135 1 561 269 108 0 chr12 119501965 119502151 -24780338 + LTR16B LTR ERVL 214 419 -45 773 271 41 9 chr12 119502549 119502770 -24779719 - MIR SINE MIR -14 248 21 300 195 24 61 chr12 119503225 119503307 -24779182 - LTR67 LTR ERVL 0 557 479 332 295 39 16 chr12 119503708 119503837 -24778652 + MIR SINE MIR 81 212 -50 274 245 111 0 chr12 119504275 119504416 -24778073 - MIR SINE MIR -9 253 93 817 162 15 7 chr12 119504505 119504641 -24777848 + AluJo SINE Alu 1 137 -175 2016 150 13 0 chr12 119504642 119504942 -24777547 + AluSx SINE Alu 1 304 -8 422 305 102 61 chr12 119505985 119506329 -24776160 - L2 LINE L2 -62 3210 2853 356 280 193 34 chr12 119506336 119506543 -24775946 - MIR SINE MIR -15 247 8 2121 141 0 13 chr12 119506596 119506732 -24775757 + AluSx SINE Alu 1 137 -175 2093 126 44 0 chr12 119506732 119507025 -24775464 + AluSx SINE Alu 1 306 -6 2121 141 0 13 chr12 119507025 119507201 -24775288 + AluSx SINE Alu 137 309 -3 321 216 160 21 chr12 119507379 119507505 -24774984 + MIR SINE MIR 41 184 -65 714 123 9 9 chr12 119508220 119508326 -24774163 + AluJb SINE Alu 87 192 -120 1658 166 3 24 chr12 119508330 119508480 -24774009 - AluJb SINE Alu -28 284 141 2082 122 3 0 chr12 119508480 119508776 -24773713 - AluSx SINE Alu -13 299 3 1658 166 3 24 chr12 119508776 119508915 -24773574 - AluJb SINE Alu -171 141 1 2268 94 0 7 chr12 119508919 119509216 -24773273 - AluSx SINE Alu -17 295 1 311 359 15 0 chr12 119509753 119509884 -24772605 - L2 LINE L2 -48 3265 3133 2079 183 121 48 chr12 119510071 119510361 -24772128 + L1MB5 LINE L1 5570 5837 -337 2183 116 0 0 chr12 119510361 119510662 -24771827 + AluSg SINE Alu 1 301 -9 2079 183 121 48 chr12 119510662 119510892 -24771597 + L1MB5 LINE L1 5837 6136 -38 2137 103 3 19 chr12 119510892 119511204 -24771285 + AluSx SINE Alu 1 307 -5 2079 183 121 48 chr12 119511204 119511245 -24771244 + L1MB5 LINE L1 6136 6173 -1 204 200 0 0 chr12 119511619 119511659 -24770830 + GA-rich Low_complexity Low_complexity 4 43 0 339 280 50 3 chr12 119511757 119511876 -24770613 + MIR SINE MIR 28 146 -62 360 282 8 43 chr12 119511890 119512007 -24770482 - MLT2D LTR ERVL -8 406 294 24 32 0 0 chr12 119512023 119512054 -24770435 + AT_rich Low_complexity Low_complexity 1 31 0 451 179 0 0 chr12 119512055 119512122 -24770367 - AluJ/FRAM SINE Alu -25 287 221 1558 140 17 53 chr12 119512122 119512203 -24770286 + AluJo SINE Alu 21 103 -209 1784 116 0 0 chr12 119512203 119512445 -24770044 - AluSx SINE Alu -57 255 14 1558 140 17 53 chr12 119512445 119512663 -24769826 + AluJo SINE Alu 103 309 -3 2180 109 0 3 chr12 119512665 119512969 -24769520 + AluSx SINE Alu 1 303 -9 312 250 13 0 chr12 119513054 119513130 -24769359 - MIR SINE MIR -80 182 106 803 160 0 8 chr12 119513685 119513801 -24768688 + FLAM_C SINE Alu 1 117 -185 261 0 0 0 chr12 119513801 119513830 -24768659 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 468 303 70 0 chr12 119513895 119514037 -24768452 - Charlie8 DNA MER1_type -2141 276 125 390 299 80 85 chr12 119515696 119516098 -24766391 - L2 LINE L2 -2 3311 2912 216 313 36 83 chr12 119516799 119516991 -24765498 - L2 LINE L2 -91 3181 2999 1171 124 0 50 chr12 119517948 119518149 -24764340 - AluJb SINE Alu -32 280 90 1784 159 0 14 chr12 119518174 119518470 -24764019 - AluJb SINE Alu -20 292 1 406 265 61 20 chr12 119518483 119518630 -24763859 - L1MC4a LINE L1 -1886 5922 5770 865 182 59 0 chr12 119518633 119518803 -24763686 - MER58A DNA MER1_type 0 224 45 1907 141 0 3 chr12 119518817 119519107 -24763382 + AluJo SINE Alu 13 301 -11 312 266 152 13 chr12 119519217 119519375 -24763114 + LTR68 LTR ERV1 1 180 -560 1351 153 106 22 chr12 119519565 119519840 -24762649 - AluJo SINE Alu -14 298 1 666 273 35 43 chr12 119520365 119520596 -24761893 - MIR SINE MIR -5 257 29 2105 134 0 3 chr12 119520666 119520979 -24761510 + AluSx SINE Alu 1 312 0 1944 155 0 0 chr12 119520989 119521298 -24761191 + AluJb SINE Alu 1 309 -3 292 274 26 35 chr12 119521327 119521404 -24761085 - MIR SINE MIR -62 200 123 2205 113 0 3 chr12 119521404 119521715 -24760774 + AluSx SINE Alu 1 310 -2 292 274 26 35 chr12 119521715 119521750 -24760739 - MIR SINE MIR -139 123 89 570 232 62 51 chr12 119523495 119523600 -24758889 + MIR SINE MIR 84 193 -69 871 165 0 0 chr12 119523600 119523727 -24758762 + FLAM_A SINE Alu 1 127 -6 570 232 62 51 chr12 119523727 119523798 -24758691 + MIR SINE MIR 193 262 0 270 267 7 27 chr12 119523877 119524027 -24758462 + (TG)n Simple_repeat Simple_repeat 2 148 0 338 200 24 64 chr12 119524752 119524877 -24757612 - L1ME3A LINE L1 0 6170 6051 1728 138 3 30 chr12 119525457 119525762 -24756727 + AluJb SINE Alu 1 297 -15 1588 105 70 0 chr12 119525803 119526031 -24756458 + AluSx SINE Alu 53 296 -16 2207 100 0 0 chr12 119526964 119527255 -24755234 - AluSx SINE Alu -21 291 1 271 333 88 0 chr12 119527264 119527378 -24755111 + MIR SINE MIR 72 195 -67 191 81 54 0 chr12 119527688 119527725 -24754764 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 471 172 0 23 chr12 119527771 119528036 -24754453 + CT-rich Low_complexity Low_complexity 1 258 0 225 0 0 0 chr12 119528056 119528081 -24754408 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 478 207 7 59 chr12 119528780 119528915 -24753574 + MIR SINE MIR 23 150 -58 387 303 206 6 chr12 119529133 119529308 -24753181 + MIR SINE MIR 45 254 -8 1980 143 0 3 chr12 119529341 119529635 -24752854 - AluSx SINE Alu -15 297 5 2148 125 3 0 chr12 119529637 119529948 -24752541 - AluSx SINE Alu 0 312 1 2192 107 3 0 chr12 119530469 119530767 -24751722 + AluSx SINE Alu 1 299 -13 293 198 12 37 chr12 119530887 119530968 -24751521 + L2 LINE L2 2965 3043 -229 600 196 30 83 chr12 119531032 119531121 -24751368 + MIR SINE MIR 34 126 -136 1926 111 0 30 chr12 119531121 119531418 -24751071 - AluSg SINE Alu -21 289 2 600 196 30 83 chr12 119531418 119531444 -24751045 + MIR SINE MIR 126 152 -110 1878 98 0 8 chr12 119531444 119531710 -24750779 + AluSq SINE Alu 37 300 -13 600 196 30 83 chr12 119531710 119531761 -24750728 + MIR SINE MIR 152 192 -70 2157 114 3 0 chr12 119532229 119532528 -24749961 + AluSq SINE Alu 1 300 -13 186 320 0 0 chr12 119533033 119533083 -24749406 - L2 LINE L2 0 3272 3223 551 55 27 0 chr12 119533164 119533237 -24749252 - Alu SINE Alu -233 77 3 1938 101 4 0 chr12 119533268 119533536 -24748953 + AluSq SINE Alu 43 311 -2 1202 170 10 0 chr12 119533536 119533736 -24748753 + AluSg/x SINE Alu 108 309 -3 550 281 142 67 chr12 119534091 119534302 -24748187 + L1ME4a LINE L1 5628 5822 -299 2072 120 0 7 chr12 119534302 119534602 -24747887 + AluSx SINE Alu 1 298 -14 854 181 0 0 chr12 119534606 119534739 -24747750 + FLAM_A SINE Alu 1 133 0 550 281 142 67 chr12 119534739 119534938 -24747551 + L1ME4a LINE L1 5824 6074 -47 1827 202 22 34 chr12 119534968 119535010 -24747479 - L1MB5 LINE L1 0 6174 6133 2158 86 10 23 chr12 119535010 119535312 -24747177 - AluSp SINE Alu -14 299 2 2254 92 7 7 chr12 119535314 119535617 -24746872 - AluSx SINE Alu -9 303 1 1827 202 22 34 chr12 119535617 119535982 -24746507 - L1MB5 LINE L1 -42 6132 5769 180 279 0 0 chr12 119536246 119536307 -24746182 + (TATG)n Simple_repeat Simple_repeat 2 62 0 195 100 0 0 chr12 119536307 119536337 -24746152 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 2100 114 7 13 chr12 119536581 119536889 -24745600 + AluSx SINE Alu 1 306 -6 1458 146 46 99 chr12 119536917 119537257 -24745232 - AluJb SINE Alu 0 324 1 294 189 50 119 chr12 119537264 119537305 -24745184 - L1ME3A LINE L1 -284 5886 5844 1002 164 0 34 chr12 119537305 119537482 -24745007 + FAM SINE Alu 4 174 -1 294 189 50 119 chr12 119537482 119537555 -24744934 - L1ME3A LINE L1 -326 5844 5783 1424 188 65 4 chr12 119537555 119537832 -24744657 - AluJo SINE Alu -18 294 1 294 189 50 119 chr12 119537832 119537875 -24744614 - L1ME3A LINE L1 -387 5783 5739 1440 186 113 15 chr12 119537899 119538173 -24744316 + AluJb SINE Alu 1 301 -1 23 33 0 0 chr12 119538197 119538227 -24744262 + AT_rich Low_complexity Low_complexity 1 30 0 1726 150 25 0 chr12 119538324 119538618 -24743871 + AluSx SINE Alu 1 301 0 365 322 22 33 chr12 119538639 119538819 -24743670 - L1ME4a LINE L1 -250 5871 5694 982 95 0 7 chr12 119539916 119540053 -24742436 + AluJb SINE Alu 1 136 -176 1995 130 0 10 chr12 119540053 119540352 -24742137 + AluSc SINE Alu 1 296 -13 1088 161 58 31 chr12 119540354 119540578 -24741911 + AluJo SINE Alu 77 306 -6 223 229 14 14 chr12 119540690 119540760 -24741729 - L2 LINE L2 -173 3099 3030 183 42 0 0 chr12 119540880 119540904 -24741585 + (GGGGA)n Simple_repeat Simple_repeat 4 27 0 1929 124 13 26 chr12 119540904 119541211 -24741278 + AluSx SINE Alu 3 305 -7 270 272 12 12 chr12 119541774 119541855 -24740634 - MER117 DNA MER1_type -61 136 56 1434 157 111 4 chr12 119542376 119542638 -24739851 + AluJo SINE Alu 1 290 -22 1374 163 83 35 chr12 119542641 119542929 -24739560 + AluJo SINE Alu 1 302 -10 2015 129 3 10 chr12 119542935 119543245 -24739244 + AluSg SINE Alu 1 308 -2 2192 96 3 6 chr12 119543355 119543668 -24738821 - AluSx SINE Alu 0 312 1 2256 65 3 33 chr12 119543872 119544179 -24738310 + AluY SINE Alu 1 298 -13 465 300 18 13 chr12 119544195 119544420 -24738069 - MIR SINE MIR -16 246 21 316 122 0 0 chr12 119544685 119544734 -24737755 - Alu SINE Alu -7 295 247 906 121 0 0 chr12 119544805 119544937 -24737552 + AluSq/x SINE Alu 1 132 -180 316 122 0 0 chr12 119545713 119545762 -24736727 - Alu SINE Alu -7 295 247 1979 114 4 0 chr12 119545833 119546137 -24736352 + AluSx SINE Alu 1 305 0 2040 199 92 23 chr12 119546139 119546796 -24735693 - L1MB7 LINE L1 -32 6152 5396 1583 170 20 23 chr12 119546986 119547286 -24735203 + AluJb SINE Alu 1 299 -13 360 0 0 0 chr12 119547792 119547832 -24734657 + (TG)n Simple_repeat Simple_repeat 1 40 0 1849 109 49 4 chr12 119547832 119548099 -24734390 - AluSx SINE Alu -33 279 1 565 186 7 7 chr12 119548153 119548298 -24734191 + CT-rich Low_complexity Low_complexity 2 146 0 466 274 0 0 chr12 119548341 119548443 -24734046 + MER81 DNA DNA 12 113 -1 2088 120 0 13 chr12 119548832 119549148 -24733341 - AluSx SINE Alu 0 312 1 189 301 68 0 chr12 119549512 119549585 -24732904 - L2 LINE L2 -54 3259 3182 * 652 306 16 0 chr12 119549573 119549756 -24732733 + MIR SINE MIR 12 197 -65 807 136 0 0 chr12 119549763 119549881 -24732608 + AluJ SINE Alu 1 118 -194 885 19 0 0 chr12 119549888 119549991 -24732498 + (TA)n Simple_repeat Simple_repeat 1 103 0 193 361 55 33 chr12 119550181 119550364 -24732125 - L2 LINE L2 -232 3040 2854 185 277 0 0 chr12 119550418 119550465 -24732024 - L2 LINE L2 -556 2758 2712 390 278 0 0 chr12 119550557 119550647 -24731842 + MER91B DNA MER1_type 68 157 -33 200 314 42 85 chr12 119550846 119550964 -24731525 - MIR SINE MIR -66 196 84 919 183 0 18 chr12 119551022 119551036 -24731453 + AluJ SINE Alu 121 134 -178 1883 127 0 45 chr12 119551036 119551344 -24731145 + AluSx SINE Alu 1 294 -18 919 183 0 18 chr12 119551344 119551498 -24730991 + AluJ SINE Alu 134 286 -26 441 245 140 10 chr12 119551539 119551739 -24730750 - L1MC4 LINE L1 -371 7671 7446 1867 93 4 4 chr12 119551845 119552102 -24730387 - AluSx SINE Alu -55 257 1 415 269 127 4 chr12 119552285 119552558 -24729931 - L1MC4 LINE L1 0 8042 7692 1935 120 0 45 chr12 119552595 119552903 -24729586 + AluSx SINE Alu 1 294 -18 914 179 0 0 chr12 119552906 119553057 -24729432 + AluJo/FRAM SINE Alu 136 286 -26 1035 229 96 7 chr12 119553098 119553399 -24729090 - L1MC4 LINE L1 -371 7671 7344 858 77 17 0 chr12 119553399 119553516 -24728973 + AluSg/x SINE Alu 152 270 -40 327 148 0 0 chr12 119553521 119553575 -24728914 - L1MC4a LINE L1 -542 7266 7213 414 107 0 0 chr12 119553576 119553632 -24728857 + Alu SINE Alu 2 57 -261 180 0 0 0 chr12 119554218 119554238 -24728251 + (A)n Simple_repeat Simple_repeat 1 20 0 1928 136 3 16 chr12 119554261 119554570 -24727919 - AluSx SINE Alu -7 305 1 466 274 0 0 chr12 119554868 119554970 -24727519 - MER81 DNA DNA -1 113 12 1510 98 10 0 chr12 119605043 119605246 -24677243 + AluSg/x SINE Alu 97 301 -11 582 243 23 29 chr12 119605715 119605888 -24676601 + MIR SINE MIR 28 199 -63 230 287 184 44 chr12 119607194 119607330 -24675159 + MIR SINE MIR 5 159 -103 2235 241 62 12 chr12 119607335 119607849 -24674640 - MLT1F LTR MaLR -2 540 1 265 252 143 25 chr12 119607863 119607982 -24674507 - MER5A DNA MER1_type -14 175 43 * 422 254 127 8 chr12 119607879 119608013 -24674476 + MER5A DNA MER1_type 40 189 0 238 211 118 13 chr12 119608402 119608478 -24674011 - MLT1K LTR MaLR -329 259 176 1129 170 23 46 chr12 119608799 119608839 -24673650 - L1MB3 LINE L1 0 6183 6144 276 30 0 0 chr12 119608839 119608872 -24673617 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1885 139 11 0 chr12 119608872 119609153 -24673336 - AluJb SINE Alu -28 284 1 1129 170 23 46 chr12 119609153 119609370 -24673119 - L1MB3 LINE L1 -37 6146 5931 3080 158 80 51 chr12 119609174 119609370 -24673119 - L1MB2 LINE L1 -54 6130 5941 353 132 103 0 chr12 119609370 119609438 -24673051 - MADE1 DNA Mariner 0 80 6 3080 158 80 51 chr12 119609438 119609696 -24672793 - L1MB2 LINE L1 -243 5941 5692 2284 93 3 0 chr12 119609696 119609997 -24672492 + AluSx SINE Alu 2 303 -9 3080 158 80 51 chr12 119609997 119610303 -24672186 - L1MB2 LINE L1 -492 5692 5396 1974 128 7 0 chr12 119610303 119610600 -24671889 - AluSx SINE Alu -11 301 3 2048 113 0 0 chr12 119610604 119610911 -24671578 - AluSx SINE Alu 0 307 1 3080 158 80 51 chr12 119610911 119611011 -24671478 - L1MB2 LINE L1 -790 5394 5221 1930 87 105 0 chr12 119611147 119611424 -24671065 - AluSp SINE Alu -7 306 1 325 288 39 51 chr12 119611745 119611870 -24670619 - MLT1L LTR MaLR -184 431 306 2194 103 0 3 chr12 119611870 119612171 -24670318 - AluSg SINE Alu -10 300 1 325 288 39 51 chr12 119612171 119612277 -24670212 - MLT1L LTR MaLR -309 306 122 371 323 39 7 chr12 119612982 119613137 -24669352 - MER117 DNA MER1_type 0 197 38 367 226 32 4 chr12 119613322 119613429 -24669060 + MIR SINE MIR 39 145 -63 361 197 8 8 chr12 119615807 119615924 -24666565 + (CTGGGG)n Simple_repeat Simple_repeat 2 118 0 384 305 47 0 chr12 119616431 119616559 -24665930 - MIR3 SINE MIR -31 177 44 461 306 87 6 chr12 119616619 119616802 -24665687 - MIR SINE MIR -19 243 46 586 259 14 83 chr12 119616962 119617053 -24665436 - L2 LINE L2 -5 3308 3212 1553 93 5 5 chr12 119617053 119617269 -24665220 + AluSq SINE Alu 85 300 -13 586 259 14 83 chr12 119617269 119617393 -24665096 - L2 LINE L2 -101 3212 3108 1945 113 27 7 chr12 119617393 119617685 -24664804 + AluSx SINE Alu 1 298 -14 1055 135 6 0 chr12 119617685 119617848 -24664641 + AluSg/x SINE Alu 133 296 -14 218 288 34 0 chr12 119618348 119618407 -24664082 - L2 LINE L2 -212 3060 3000 2950 89 5 0 chr12 119618410 119618801 -24663688 + L1PA8A LINE L1 5734 6126 -5 571 291 28 0 chr12 119619079 119619261 -24663228 + MIR SINE MIR 48 234 -28 373 279 32 119 chr12 119619352 119619696 -24662793 + L2 LINE L2 2474 2787 -527 245 180 33 14 chr12 119619696 119619945 -24662544 + AluJo SINE Alu 1 299 -1 653 285 92 0 chr12 119619950 119620199 -24662290 + L2 LINE L2 2816 3087 -226 240 300 80 10 chr12 119620329 119620429 -24662060 - MIR SINE MIR -77 185 79 339 229 3 0 chr12 119620830 119620916 -24661573 + MIR SINE MIR 59 142 -66 186 336 146 9 chr12 119621014 119621124 -24661365 + MIR SINE MIR 119 243 -19 193 273 152 0 chr12 119621137 119621203 -24661286 - MIR SINE MIR -92 116 41 21 0 0 0 chr12 119622047 119622068 -24660421 + GC_rich Low_complexity Low_complexity 1 21 0 561 191 0 9 chr12 119622325 119622430 -24660059 + AluJo SINE Alu 44 147 -165 488 243 28 27 chr12 119622581 119622734 -24659755 + MIR3 SINE MIR 10 161 -62 236 258 11 65 chr12 119622914 119623007 -24659482 - L2 LINE L2 -5 3267 3180 1149 153 40 27 chr12 119623078 119623300 -24659189 - AluJo SINE Alu -3 309 85 1302 221 82 32 chr12 119623309 119623527 -24658962 - L2 LINE L2 -244 3069 2863 2186 101 0 49 chr12 119623527 119623855 -24658634 + AluSx SINE Alu 1 312 0 1302 221 82 32 chr12 119623855 119624158 -24658331 - L2 LINE L2 -450 2863 2527 2798 85 3 0 chr12 119624166 119624520 -24657969 - THE1A LTR MaLR 0 355 1 8246 113 25 2 chr12 119624520 119625648 -24656841 - THE1A-int LTR MaLR 0 1580 391 2158 116 6 3 chr12 119625648 119625959 -24656530 - AluSx SINE Alu 0 312 1 8246 113 25 2 chr12 119625959 119626358 -24656131 - THE1A-int LTR MaLR -1189 391 3 348 183 0 0 chr12 119626360 119626420 -24656069 - THE1A LTR MaLR 0 355 296 1671 88 17 17 chr12 119626421 119626660 -24655829 - AluSg SINE Alu -7 303 65 1717 39 5 0 chr12 119626660 119626865 -24655624 - L1PA5 LINE L1 -2 6152 5947 609 64 0 0 chr12 119626865 119626943 -24655546 - AluSg SINE Alu -231 79 2 2277 80 3 0 chr12 119626944 119627246 -24655243 - THE1A LTR MaLR -52 303 1 204 216 0 0 chr12 119627298 119627335 -24655154 + GA-rich Low_complexity Low_complexity 1 37 0 2247 103 0 10 chr12 119627352 119627664 -24654825 + AluSg1 SINE Alu 1 309 0 917 219 0 30 chr12 119627673 119627874 -24654615 + AluJo SINE Alu 1 195 -117 25 0 0 0 chr12 119627888 119627913 -24654576 + AT_rich Low_complexity Low_complexity 1 25 0 674 228 38 61 chr12 119627954 119628135 -24654354 + L1M4 LINE L1 4879 5063 -1083 1610 155 30 24 chr12 119628135 119628432 -24654057 + AluJo SINE Alu 2 300 -12 2087 118 3 16 chr12 119628432 119628567 -24653922 + AluSg SINE Alu 1 136 -174 2296 88 3 3 chr12 119628567 119628874 -24653615 + AluSx SINE Alu 1 307 -5 2087 118 3 16 chr12 119628874 119629051 -24653438 + AluSg SINE Alu 136 309 -1 674 228 38 61 chr12 119629051 119629131 -24653358 + L1M4 LINE L1 5061 5135 -1011 1956 136 27 0 chr12 119629151 119629446 -24653043 - AluSx SINE Alu -9 303 1 264 100 0 0 chr12 119629496 119629536 -24652953 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 184 73 0 73 chr12 119629529 119629570 -24652919 + (GGAAA)n Simple_repeat Simple_repeat 5 42 0 * 451 212 30 48 chr12 119629570 119629735 -24652754 + L1M4 LINE L1 5176 5337 -809 762 173 23 40 chr12 119629747 119629920 -24652569 - AluSp SINE Alu -27 286 117 639 0 0 0 chr12 119630110 119630181 -24652308 + (TA)n Simple_repeat Simple_repeat 1 71 0 193 361 55 33 chr12 119630371 119630554 -24651935 - L2 LINE L2 -232 3040 2854 185 277 0 0 chr12 119630608 119630655 -24651834 - L2 LINE L2 -556 2758 2712 390 278 0 0 chr12 119630747 119630837 -24651652 + MER91B DNA MER1_type 68 157 -33 200 314 42 85 chr12 119631036 119631154 -24651335 - MIR SINE MIR -66 196 84 1974 126 3 16 chr12 119631226 119631535 -24650954 + AluSx SINE Alu 1 305 -7 2203 95 3 3 chr12 119631558 119631862 -24650627 - AluSx SINE Alu -8 304 1 302 262 30 11 chr12 119632045 119632318 -24650171 - L1MC4 LINE L1 0 8042 7692 1935 120 0 45 chr12 119632355 119632663 -24649826 + AluSx SINE Alu 1 294 -18 914 179 0 0 chr12 119632666 119632817 -24649672 + AluJo/FRAM SINE Alu 136 286 -26 1035 229 96 7 chr12 119632858 119633159 -24649330 - L1MC4 LINE L1 -371 7671 7344 858 77 17 0 chr12 119633159 119633276 -24649213 + AluSg/x SINE Alu 152 270 -40 821 144 10 93 chr12 119633281 119633335 -24649154 - L1MC4 LINE L1 -696 7346 7289 2336 71 0 7 chr12 119633335 119633632 -24648857 + AluSc SINE Alu 1 295 -14 821 144 10 93 chr12 119633632 119633771 -24648718 - L1MC4 LINE L1 -753 7289 7169 1501 157 3 86 chr12 119634220 119634533 -24647956 + AluJo SINE Alu 5 291 -21 2186 99 0 7 chr12 119634538 119634832 -24647657 + AluSx SINE Alu 1 292 -20 2078 117 13 0 chr12 119634858 119635158 -24647331 + AluSx SINE Alu 1 304 -8 852 146 43 30 chr12 119635206 119635370 -24647119 + FRAM SINE Alu 11 176 0 309 290 42 78 chr12 119635733 119635854 -24646635 - L1ME4a LINE L1 -5 6116 5992 315 0 0 0 chr12 119635854 119635889 -24646600 + (TG)n Simple_repeat Simple_repeat 2 36 0 1836 118 10 24 chr12 119635889 119636177 -24646312 - AluSx SINE Alu -28 284 1 309 290 42 78 chr12 119636177 119636247 -24646242 - L1ME4a LINE L1 -127 5994 5931 1828 170 0 0 chr12 119636322 119636633 -24645856 + AluJo SINE Alu 1 311 -1 1131 165 0 0 chr12 119636633 119636809 -24645680 + AluSg/x SINE Alu 132 307 -3 296 305 106 6 chr12 119636833 119637108 -24645381 - L1ME4a LINE L1 -319 5855 5547 2161 113 7 0 chr12 119637183 119637484 -24645005 + AluSx SINE Alu 1 303 -9 332 210 62 24 chr12 119638087 119638185 -24644304 + AluYa8 SINE Alu 132 223 -77 237 91 0 0 chr12 119638178 119638211 -24644278 + Alu SINE Alu 172 204 -98 * 635 156 115 49 chr12 119638215 119638337 -24644152 + FAM SINE Alu 36 165 -20 2161 121 10 0 chr12 119638381 119638688 -24643801 + AluSx SINE Alu 2 311 -1 474 153 153 0 chr12 119638956 119639041 -24643448 + 5S rRNA rRNA 1 98 -23 2052 112 0 11 chr12 119639351 119639636 -24642853 + AluSx SINE Alu 9 290 -22 736 163 0 54 chr12 119639857 119639975 -24642514 + FLAM_C SINE Alu 2 114 -198 4819 53 12 3 chr12 119639975 119640561 -24641928 + LTR10C LTR ERV1 1 591 0 1359 185 0 97 chr12 119640578 119640907 -24641582 + AluJo SINE Alu 3 299 -13 1809 154 14 10 chr12 119641627 119641920 -24640569 + AluJo SINE Alu 3 296 -16 506 292 64 50 chr12 119641946 119642106 -24640383 + MIR SINE MIR 57 222 -40 2088 132 7 0 chr12 119642106 119642410 -24640079 + AluSx SINE Alu 1 306 -6 506 292 64 50 chr12 119642410 119642451 -24640038 + MIR SINE MIR 222 261 -1 184 182 0 0 chr12 119643106 119643139 -24639350 - MIR SINE MIR -61 147 115 2022 120 27 0 chr12 119643208 119643507 -24638982 + AluSx SINE Alu 1 307 -5 230 367 138 0 chr12 119643702 119643898 -24638591 - L2 LINE L2 -91 3181 2959 241 218 287 10 chr12 119643941 119644042 -24638447 - L2 LINE L2 0 3313 3185 182 250 16 47 chr12 119644100 119644164 -24638325 + L3 LINE CR1 1510 1571 -6 287 54 0 0 chr12 119644322 119644359 -24638130 + MADE1 DNA Mariner 1 37 -43 902 108 31 0 chr12 119644369 119644498 -24637991 - AluSq/x SINE Alu -179 133 1 2218 75 17 10 chr12 119644597 119644891 -24637598 + AluSc SINE Alu 1 296 -13 2302 58 22 26 chr12 119644891 119645203 -24637286 + AluY SINE Alu 1 311 0 240 88 0 0 chr12 119645205 119645239 -24637250 + MADE1 DNA Mariner 47 80 0 2120 99 19 25 chr12 119645257 119645571 -24636918 + AluSx SINE Alu 1 312 0 240 88 0 0 chr12 119645571 119645605 -24636884 - MADE1 DNA Mariner -46 34 1 2239 108 0 0 chr12 119645623 119645930 -24636559 + AluSx SINE Alu 1 307 -5 190 259 0 74 chr12 119645938 119645992 -24636497 + L2 LINE L2 3210 3259 -13 2041 128 3 0 chr12 119646162 119646458 -24636031 + AluSx SINE Alu 3 299 -13 798 199 35 0 chr12 119646487 119646657 -24635832 - MER33 DNA MER1_type -259 65 1 731 195 40 6 chr12 119646663 119646847 -24635642 + MIR SINE MIR 34 226 -36 21 0 0 0 chr12 119648054 119648075 -24634414 + AT_rich Low_complexity Low_complexity 1 21 0 858 188 34 0 chr12 119650092 119650241 -24632248 + FRAM SINE Alu 5 158 -8 897 134 0 8 chr12 119650271 119650405 -24632084 + FLAM_C SINE Alu 1 133 0 505 239 172 24 chr12 119650407 119650616 -24631873 + MER102b DNA MER1_type 96 335 -6 365 261 101 0 chr12 119650851 119650970 -24631519 + MIR SINE MIR 117 247 -15 840 132 0 90 chr12 119650972 119651139 -24631350 + AluSg/x SINE Alu 123 274 -38 1561 44 5 15 chr12 119651139 119651344 -24631145 - AluY SINE Alu -6 305 103 1777 74 0 9 chr12 119651471 119651701 -24630788 + AluY SINE Alu 66 293 -18 2114 172 27 46 chr12 119651711 119651958 -24630531 + L1MB5 LINE L1 5356 5606 -560 2224 94 0 3 chr12 119651958 119652256 -24630233 + AluSx SINE Alu 2 298 -14 2085 116 30 0 chr12 119652256 119652559 -24629930 + AluSx SINE Alu 1 312 0 2114 172 27 46 chr12 119652559 119652787 -24629702 + L1MB5 LINE L1 5604 5823 -343 743 194 57 70 chr12 119652789 119652815 -24629674 + L1MB5 LINE L1 5915 5940 -234 2178 112 0 0 chr12 119652815 119653118 -24629371 + AluSx SINE Alu 1 303 -9 743 194 57 70 chr12 119653118 119653318 -24629171 + L1MB5 LINE L1 5940 6138 -36 399 21 0 0 chr12 119653333 119653381 -24629108 + (TG)n Simple_repeat Simple_repeat 2 49 0 301 137 0 0 chr12 119653401 119653452 -24629037 + L1MB3 LINE L1 6133 6183 0 1846 158 3 3 chr12 119653459 119653756 -24628733 + AluJo SINE Alu 1 297 -15 2358 90 3 0 chr12 119653756 119654066 -24628423 + AluSp SINE Alu 1 311 -2 184 147 0 0 chr12 119654126 119654160 -24628329 - L2 LINE L2 -703 2611 2578 566 273 181 12 chr12 119654356 119654605 -24627884 + L2 LINE L2 3022 3312 -1 282 306 148 0 chr12 119654608 119654716 -24627773 + L2 LINE L2 3185 3308 -5 291 28 0 0 chr12 119655129 119655165 -24627324 + (CA)n Simple_repeat Simple_repeat 2 37 0 324 48 0 0 chr12 119655220 119655262 -24627227 + (CA)n Simple_repeat Simple_repeat 2 43 0 417 275 55 3 chr12 119655295 119655518 -24626971 + MLT1K LTR MaLR 163 462 -126 301 175 0 0 chr12 119655795 119655858 -24626631 - L1MB5 LINE L1 0 6174 6112 795 163 0 8 chr12 119655859 119655982 -24626507 + FLAM_C SINE Alu 2 123 -20 2159 113 0 0 chr12 119656421 119656714 -24625775 + AluJb SINE Alu 1 293 -19 1639 176 3 7 chr12 119656993 119657288 -24625201 - AluJo SINE Alu -1 311 18 1857 135 3 43 chr12 119657457 119657601 -24624888 + AluSq SINE Alu 1 128 -185 2285 85 0 7 chr12 119657601 119657908 -24624581 + AluSc SINE Alu 1 305 -4 1857 135 3 43 chr12 119657908 119658067 -24624422 + AluSq SINE Alu 128 292 -21 1272 111 0 0 chr12 119658077 119658257 -24624232 + AluSg/x SINE Alu 126 305 -5 975 173 0 0 chr12 119658562 119658724 -24623765 + AluJb SINE Alu 137 298 -14 1659 170 16 16 chr12 119659143 119659454 -24623035 + AluJb SINE Alu 1 311 -1 429 189 19 9 chr12 119659872 119659978 -24622511 + L1MB5 LINE L1 5804 5910 -264 2317 90 0 0 chr12 119660017 119660316 -24622173 + AluY SINE Alu 1 299 -12 2120 117 0 0 chr12 119660428 119660710 -24621779 + AluSx SINE Alu 1 282 -30 391 180 0 0 chr12 119660710 119660740 -24621749 + AluYb8 SINE Alu 1 312 0 912 192 0 17 chr12 119660881 119661058 -24621431 + AluJb SINE Alu 129 302 -10 381 189 0 0 chr12 119661058 119661132 -24621357 - L1MB5 LINE L1 -50 6124 6051 1591 146 22 47 chr12 119661171 119661454 -24621035 - L1MB5 LINE L1 -111 6063 5789 1897 136 3 36 chr12 119661454 119661762 -24620727 - AluJb SINE Alu -14 298 1 1591 146 22 47 chr12 119661762 119661840 -24620649 - L1MB5 LINE L1 -385 5789 5711 954 309 64 35 chr12 119661950 119662512 -24619977 + L2 LINE L2 2507 3079 -193 248 271 14 14 chr12 119662528 119662598 -24619891 - L2 LINE L2 -3 3269 3200 1849 153 10 3 chr12 119662603 119662898 -24619591 + AluSx SINE Alu 1 297 -15 795 128 16 24 chr12 119662970 119663119 -24619370 + AluJb SINE Alu 159 306 0 864 148 0 22 chr12 119663131 119663266 -24619223 + FLAM_C SINE Alu 2 133 0 716 284 69 39 chr12 119663318 119663624 -24618865 - L2 LINE L2 -79 3234 2920 333 244 114 8 chr12 119663640 119663771 -24618718 - L2 LINE L2 -1135 2179 2035 411 239 37 18 chr12 119663829 119663938 -24618551 + L2 LINE L2 3182 3292 -21 1186 129 0 16 chr12 119664415 119664601 -24617888 - AluSc SINE Alu -5 304 122 850 114 193 0 chr12 119664913 119665053 -24617436 - AluSp SINE Alu -7 306 140 1228 100 12 6 chr12 119665345 119665510 -24616979 + FAM SINE Alu 1 167 -4 2442 51 0 0 chr12 119665510 119665804 -24616685 - AluY SINE Alu -17 294 1 553 204 0 0 chr12 119665880 119665983 -24616506 + MIR SINE MIR 49 151 -111 2127 118 10 0 chr12 119665983 119666288 -24616201 + AluSx SINE Alu 1 308 -4 403 284 57 28 chr12 119666317 119666458 -24616031 - MIR SINE MIR -74 188 44 * 536 260 110 0 chr12 119666410 119666556 -24615933 + MIR SINE MIR 33 194 -68 429 246 39 73 chr12 119666554 119666733 -24615756 + L2 LINE L2 3122 3294 -19 * 651 255 32 11 chr12 119666960 119667148 -24615341 - MLT1K LTR MaLR -26 562 371 1906 87 8 8 chr12 119667179 119667433 -24615056 - AluSx SINE Alu -58 254 1 420 158 20 30 chr12 119667800 119667901 -24614588 - MIR SINE MIR -147 115 16 294 95 0 0 chr12 119668157 119668199 -24614290 + (TA)n Simple_repeat Simple_repeat 2 43 0 288 0 0 0 chr12 119668202 119668234 -24614255 + (GA)n Simple_repeat Simple_repeat 1 32 0 771 147 0 0 chr12 119668236 119668345 -24614144 - AluJb SINE Alu -201 111 3 2558 184 13 40 chr12 119668812 119668875 -24613614 - L1MB5 LINE L1 -6 6168 6105 1466 177 49 14 chr12 119668875 119669039 -24613450 - AluJo SINE Alu -14 298 118 311 0 26 0 chr12 119669039 119669078 -24613411 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1466 177 49 14 chr12 119669078 119669201 -24613288 - AluJo SINE Alu -194 118 1 2558 184 13 40 chr12 119669201 119669681 -24612808 - L1MB5 LINE L1 -69 6105 5640 838 154 0 8 chr12 119669690 119669820 -24612669 - FLAM_C SINE Alu -3 130 2 2242 108 0 0 chr12 119669840 119670136 -24612353 - AluSx SINE Alu -16 296 1 1867 127 14 0 chr12 119670253 119670554 -24611935 - AluSx SINE Alu 0 309 5 409 183 2 0 chr12 119670572 119670660 -24611829 - MIR SINE MIR -63 145 62 655 231 82 24 chr12 119671233 119671441 -24611048 + MIR SINE MIR 15 234 -28 2061 113 0 31 chr12 119671479 119671797 -24610692 + AluSx SINE Alu 1 308 -4 2224 100 0 0 chr12 119671820 119672111 -24610378 + AluSg SINE Alu 1 291 -19 406 315 28 14 chr12 119672179 119672322 -24610167 + MIR SINE MIR 13 157 -105 1697 181 34 157 chr12 119672749 119672907 -24609582 - MLT1F1 LTR MaLR 0 567 391 918 213 6 23 chr12 119672907 119673081 -24609408 + FAM SINE Alu 4 174 -1 1697 181 34 157 chr12 119673081 119673405 -24609084 - MLT1F1 LTR MaLR -176 391 29 1460 86 0 0 chr12 119673405 119673591 -24608898 + AluY SINE Alu 1 186 -125 489 82 0 0 chr12 119673591 119673652 -24608837 + AluY SINE Alu 220 280 -32 646 43 0 22 chr12 119673653 119673745 -24608744 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 1697 181 34 157 chr12 119673745 119673840 -24608649 - MLT1F1 LTR MaLR -536 31 5 708 250 116 82 chr12 119673843 119674027 -24608462 - L2 LINE L2 -26 3287 3111 2025 130 13 3 chr12 119674027 119674327 -24608162 + AluJo SINE Alu 1 303 -9 708 250 116 82 chr12 119674327 119674432 -24608057 - L2 LINE L2 -202 3111 3011 1998 131 0 13 chr12 119674432 119674737 -24607752 + AluSx SINE Alu 1 301 -11 708 250 116 82 chr12 119674737 119674850 -24607639 - L2 LINE L2 -302 3011 2870 205 224 0 20 chr12 119674936 119674985 -24607504 - MIR SINE MIR -106 156 109 289 200 71 0 chr12 119675182 119675252 -24607237 + MIR SINE MIR 70 144 -118 2097 116 3 3 chr12 119675354 119675648 -24606841 - AluSq SINE Alu -16 297 4 517 272 72 46 chr12 119675652 119675847 -24606642 - MIR SINE MIR -4 258 59 2138 101 3 7 chr12 119675849 119676147 -24606342 - AluSg SINE Alu -13 297 1 914 142 49 0 chr12 119676151 119676334 -24606155 - L1MA3 LINE L1 0 6305 6114 2453 74 3 0 chr12 119676406 119676718 -24605771 - AluSp SINE Alu 0 313 1 191 333 17 0 chr12 119677350 119677410 -24605079 + MIR SINE MIR 81 141 -67 2120 126 0 0 chr12 119677445 119677747 -24604742 - AluSx SINE Alu -10 302 1 941 287 112 4 chr12 119677840 119678324 -24604165 + L2 LINE L2 2727 3271 -42 473 264 62 21 chr12 119678498 119678642 -24603847 - MIR SINE MIR -20 242 93 21 82 0 0 chr12 119679606 119679655 -24602834 + GC_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr12 119679784 119679810 -24602679 + GC_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr12 119679937 119679967 -24602522 + GC_rich Low_complexity Low_complexity 1 30 0 258 246 194 39 chr12 119681562 119681765 -24600724 + MIR SINE MIR 8 233 -29 427 235 101 8 chr12 119681935 119682054 -24600435 + MIR SINE MIR 71 200 -62 190 314 201 18 chr12 119682555 119682724 -24599765 + MIR SINE MIR 63 262 0 288 343 45 15 chr12 119682784 119682918 -24599571 + MIR SINE MIR 49 186 -76 442 305 140 6 chr12 119682955 119683119 -24599370 + MIR SINE MIR 77 262 0 1595 176 55 3 chr12 119684842 119685132 -24597357 + AluJb SINE Alu 1 305 -7 205 240 173 39 chr12 119685875 119685979 -24596510 + L2 LINE L2 3176 3293 -20 * 221 67 0 0 chr12 119685951 119685981 -24596508 + MIR SINE MIR 221 250 -12 1845 157 3 7 chr12 119686330 119686629 -24595860 - AluJb SINE Alu -14 298 1 181 225 12 150 chr12 119686768 119686848 -24595641 - L2 LINE L2 0 3313 3245 460 282 15 15 chr12 119686878 119687009 -24595480 + MIR SINE MIR 98 228 -34 1111 119 0 0 chr12 119687016 119687176 -24595313 + FRAM SINE Alu 5 164 -12 271 276 263 7 chr12 119687482 119687634 -24594855 - L2 LINE L2 -1 3312 3122 2018 139 7 0 chr12 119688068 119688363 -24594126 + AluJb SINE Alu 1 297 -15 228 315 36 27 chr12 119688720 119688831 -24593658 + L2 LINE L2 3140 3251 -21 182 147 0 0 chr12 119689309 119689343 -24593146 + L2 LINE L2 2578 2611 -703 2272 103 3 0 chr12 119689403 119689713 -24592776 - AluSq SINE Alu -2 311 1 507 342 27 14 chr12 119690339 119690561 -24591928 + MIR SINE MIR 22 246 -16 2263 65 7 33 chr12 119690577 119690883 -24591606 - AluY SINE Alu -13 298 1 2363 87 3 0 chr12 119691087 119691398 -24591091 + AluSx SINE Alu 1 312 0 2045 129 3 10 chr12 119691508 119691818 -24590671 - AluSg SINE Alu -2 308 1 1360 164 87 35 chr12 119691824 119692111 -24590378 - AluJo SINE Alu -10 302 1 1465 157 111 4 chr12 119692114 119692376 -24590113 - AluJo SINE Alu -22 290 1 246 272 12 12 chr12 119692897 119692978 -24589511 + MER117 DNA MER1_type 56 136 -61 1953 124 13 26 chr12 119693541 119693848 -24588641 - AluSx SINE Alu -7 305 3 183 42 0 0 chr12 119693848 119693872 -24588617 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 180 279 78 31 chr12 119693933 119694062 -24588427 + L2 LINE L2 2965 3099 -173 1119 174 58 18 chr12 119694174 119694398 -24588091 - AluJo SINE Alu -3 309 77 2024 130 0 10 chr12 119694400 119694699 -24587790 - AluSc SINE Alu -13 296 1 990 95 0 7 chr12 119694699 119694836 -24587653 - AluJb SINE Alu -176 136 1 337 296 23 37 chr12 119695935 119696114 -24586375 + L1ME4a LINE L1 5695 5871 -250 1763 150 25 0 chr12 119696135 119696429 -24586060 - AluSx SINE Alu 0 301 1 23 33 0 0 chr12 119696526 119696556 -24585933 + AT_rich Low_complexity Low_complexity 1 30 0 1463 196 115 0 chr12 119696584 119696854 -24585635 - AluJb SINE Alu -1 301 1 259 195 50 119 chr12 119696878 119696921 -24585568 + L1ME LINE L1 5739 5783 -387 1467 188 65 4 chr12 119696921 119697198 -24585291 + AluJo SINE Alu 1 294 -18 259 195 50 119 chr12 119697198 119697271 -24585218 + L1ME LINE L1 5783 5844 -326 1012 164 0 34 chr12 119697271 119697448 -24585041 - FAM SINE Alu -1 174 4 259 195 50 119 chr12 119697448 119697489 -24585000 + L1ME LINE L1 5844 5886 -284 1445 151 39 97 chr12 119697496 119697837 -24584652 + AluJb SINE Alu 1 312 0 2104 117 7 13 chr12 119697865 119698173 -24584316 - AluSx SINE Alu -6 306 1 304 181 56 42 chr12 119698401 119698417 -24584072 - L1MCa LINE L1 -4348 2078 2064 195 100 0 0 chr12 119698417 119698447 -24584042 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 304 181 56 42 chr12 119698447 119698502 -24583987 - L1MCa LINE L1 -4362 2064 2006 1716 202 22 34 chr12 119698772 119699137 -24583352 + L1MB5 LINE L1 5769 6137 -37 2278 92 7 7 chr12 119699137 119699440 -24583049 + AluSx SINE Alu 1 303 -9 2182 86 10 23 chr12 119699442 119699744 -24582745 + AluSp SINE Alu 2 299 -14 1716 202 22 34 chr12 119699744 119699786 -24582703 + L1MB5 LINE L1 6138 6174 0 474 285 146 62 chr12 119699828 119700015 -24582474 - L1ME4a LINE L1 -56 6065 5895 852 181 0 0 chr12 119700015 119700148 -24582341 - FLAM_A SINE Alu 0 133 1 2056 120 3 7 chr12 119700152 119700451 -24582038 - AluSx SINE Alu -14 298 1 474 285 146 62 chr12 119700451 119700662 -24581827 - L1ME4a LINE L1 -228 5893 5628 1228 170 10 0 chr12 119701017 119701217 -24581272 - AluSg/x SINE Alu -3 307 106 1903 101 8 0 chr12 119701217 119701484 -24581005 - AluSq SINE Alu -2 311 43 556 55 27 0 chr12 119701515 119701588 -24580901 + Alu SINE Alu 3 77 -232 185 320 0 0 chr12 119701669 119701719 -24580770 + L2 LINE L2 3223 3272 0 1904 97 0 8 chr12 119702224 119702491 -24579998 - AluSq SINE Alu -13 300 36 346 88 18 0 chr12 119702499 119702567 -24579922 + Alu SINE Alu 1 53 -249 1188 111 0 0 chr12 119702701 119702863 -24579626 + AluSg/x SINE Alu 130 291 -21 446 193 48 0 chr12 119702869 119702952 -24579537 - MIR SINE MIR -142 120 34 295 198 12 37 chr12 119703016 119703097 -24579392 - L2 LINE L2 -229 3043 2965 202 278 49 99 chr12 119703157 119703217 -24579272 - L2 LINE L2 -481 2833 2772 2217 107 3 0 chr12 119703217 119703515 -24578974 - AluSx SINE Alu -13 299 1 202 278 49 99 chr12 119703515 119703616 -24578873 - L2 LINE L2 -542 2772 2680 2174 125 3 0 chr12 119704036 119704347 -24578142 + AluSx SINE Alu 1 312 0 2010 143 0 3 chr12 119704349 119704643 -24577846 + AluSx SINE Alu 5 297 -15 424 303 206 6 chr12 119704676 119704851 -24577638 - MIR SINE MIR -8 254 45 498 207 7 59 chr12 119705069 119705204 -24577285 - MIR SINE MIR -58 150 23 225 0 0 0 chr12 119705903 119705928 -24576561 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 306 336 183 30 chr12 119705952 119706318 -24576171 + HAL1 LINE L1 880 1301 -1206 302 333 88 0 chr12 119706606 119706720 -24575769 - MIR SINE MIR -67 195 72 2239 100 0 0 chr12 119706729 119707020 -24575469 + AluSx SINE Alu 1 291 -21 1610 105 70 0 chr12 119707953 119708181 -24574308 - AluSx SINE Alu -16 296 53 1766 138 3 30 chr12 119708222 119708527 -24573962 - AluJb SINE Alu -15 297 1 298 122 0 0 chr12 119709839 119709888 -24572601 - Alu SINE Alu -7 295 247 2015 114 4 0 chr12 119709959 119710263 -24572226 + AluSx SINE Alu 1 305 0 1886 207 131 24 chr12 119710265 119710922 -24571567 - L1MB7 LINE L1 -32 6152 5396 1620 170 20 23 chr12 119711112 119711412 -24571077 + AluJb SINE Alu 1 299 -13 360 0 0 0 chr12 119711918 119711958 -24570531 + (TG)n Simple_repeat Simple_repeat 1 40 0 1849 109 49 4 chr12 119711958 119712225 -24570264 - AluSx SINE Alu -33 279 1 565 186 7 7 chr12 119712279 119712424 -24570065 + CT-rich Low_complexity Low_complexity 2 146 0 466 274 0 0 chr12 119712467 119712569 -24569920 + MER81 DNA DNA 12 113 -1 2088 120 0 13 chr12 119712958 119713274 -24569215 - AluSx SINE Alu 0 312 1 189 301 68 0 chr12 119713638 119713711 -24568778 - L2 LINE L2 -54 3259 3182 * 410 341 34 0 chr12 119713699 119713875 -24568614 + MIR SINE MIR 12 193 -69 1983 139 7 0 chr12 119714209 119714504 -24567985 + AluJb SINE Alu 1 297 -15 277 376 0 0 chr12 119714761 119714862 -24567627 - MIR SINE MIR -91 171 71 * 430 239 28 0 chr12 119714859 119714968 -24567521 + L2 LINE L2 3140 3251 -21 228 122 0 0 chr12 119715468 119715509 -24566980 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 2168 123 0 0 chr12 119715519 119715821 -24566668 - AluSx SINE Alu -10 302 1 300 27 0 0 chr12 119715822 119715859 -24566630 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 2236 57 0 3 chr12 119715859 119716141 -24566348 - AluY SINE Alu -30 281 1 691 273 109 34 chr12 119716199 119716381 -24566108 - MIR SINE MIR 0 262 56 2285 103 0 0 chr12 119716381 119716693 -24565796 - AluSx SINE Alu 0 312 1 691 273 109 34 chr12 119716693 119716748 -24565741 - MIR SINE MIR -206 56 7 357 276 126 19 chr12 119716926 119717205 -24565284 - L1ME3 LINE L1 -233 5929 5620 1431 161 0 77 chr12 119717206 119717360 -24565129 - L1 LINE L1 -1996 4150 4027 1418 151 102 26 chr12 119717360 119717656 -24564833 - AluJb SINE Alu 0 316 1 1431 161 0 77 chr12 119717656 119717799 -24564690 - L1 LINE L1 -2119 4027 3875 247 323 39 16 chr12 119717828 119717955 -24564534 - L1ME3 LINE L1 -769 5575 5446 23 0 0 0 chr12 119718097 119718120 -24564369 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 119718416 119718441 -24564048 + GC_rich Low_complexity Low_complexity 1 25 0 1784 158 27 3 chr12 119718928 119719226 -24563263 + AluJo SINE Alu 1 305 -7 1367 229 27 33 chr12 119719226 119719254 -24563235 - L1MC3 LINE L1 -14 7771 7744 1992 142 3 3 chr12 119719254 119719550 -24562939 + AluSx SINE Alu 1 296 -16 1367 229 27 33 chr12 119719550 119719888 -24562601 - L1MC3 LINE L1 -41 7744 7407 1358 140 0 0 chr12 119720084 119720291 -24562198 + AluJb SINE Alu 100 306 -6 386 154 15 0 chr12 119720542 119720607 -24561882 - L2 LINE L2 -1 3312 3247 469 212 76 30 chr12 119720898 119721030 -24561459 - L1ME3 LINE L1 -123 6039 5902 965 188 0 0 chr12 119721034 119721210 -24561279 - AluJb SINE Alu -4 308 133 1817 243 54 41 chr12 119721221 119721297 -24561192 - L1ME3 LINE L1 -266 5898 5824 2082 116 3 25 chr12 119721297 119721616 -24560873 - AluJb SINE Alu 0 312 1 1817 243 54 41 chr12 119721616 119721967 -24560522 - L1ME3 LINE L1 -340 5824 5458 1646 97 0 4 chr12 119721967 119722193 -24560296 - AluSg/x SINE Alu 0 310 86 1817 243 54 41 chr12 119722193 119722397 -24560092 - L1ME3 LINE L1 -706 5458 5258 2315 83 0 3 chr12 119722458 119722759 -24559730 - AluSg SINE Alu -10 300 1 1133 59 0 0 chr12 119722761 119722896 -24559593 - AluSq/x SINE Alu -177 135 1 384 223 3 58 chr12 119722931 119723112 -24559377 - L2 LINE L2 -304 2968 2797 2319 81 0 3 chr12 119723259 119723569 -24558920 - AluY SINE Alu -2 309 1 850 107 33 0 chr12 119723600 119723721 -24558768 + AluSq/x SINE Alu 1 125 -187 2146 108 6 10 chr12 119723731 119724045 -24558444 + AluSq SINE Alu 1 313 0 458 225 60 26 chr12 119724054 119724205 -24558284 + MIR SINE MIR 20 175 -87 445 282 144 16 chr12 119725249 119725572 -24556917 - L2 LINE L2 -165 3107 2727 3212 176 39 45 chr12 119725755 119726286 -24556203 - MER39 LTR ERV1 0 707 179 847 117 15 44 chr12 119726286 119726423 -24556066 - FLAM_C SINE Alu 0 133 1 3212 176 39 45 chr12 119726423 119726602 -24555887 - MER39 LTR ERV1 -528 179 1 307 205 114 74 chr12 119726683 119726829 -24555660 - MIR SINE MIR -63 145 12 361 149 33 165 chr12 119726917 119727003 -24555486 + Charlie8 DNA MER1_type 74 141 -189 2240 119 0 0 chr12 119727003 119727315 -24555174 + AluSx SINE Alu 1 312 0 361 149 33 165 chr12 119727315 119727349 -24555140 + Charlie8 DNA MER1_type 141 178 -152 198 300 43 0 chr12 119727541 119727611 -24554878 + MIR3 SINE MIR 114 186 -22 184 209 0 23 chr12 119727625 119727668 -24554821 + MIR SINE MIR 114 155 -107 643 263 78 5 chr12 119727696 119727901 -24554588 - MIR SINE MIR -6 256 37 252 265 72 0 chr12 119728305 119728388 -24554101 + MIR SINE MIR 58 146 -116 201 256 20 0 chr12 119728700 119728775 -24553714 - MIR SINE MIR -62 146 108 474 18 0 0 chr12 119728915 119728970 -24553519 + (GGA)n Simple_repeat Simple_repeat 2 56 0 298 307 124 7 chr12 119729013 119729166 -24553323 + MIR SINE MIR 60 230 -32 2113 113 0 7 chr12 119729224 119729533 -24552956 - AluSx SINE Alu -5 307 1 539 256 85 6 chr12 119729537 119729713 -24552776 - MIR SINE MIR -14 248 59 359 280 56 8 chr12 119730545 119730670 -24551819 + MIR SINE MIR 51 181 -81 297 255 72 26 chr12 119731338 119731480 -24551009 - L1ME4a LINE L1 0 6121 5970 1507 140 6 100 chr12 119731480 119731809 -24550680 - AluJo SINE Alu -4 298 1 1616 71 33 0 chr12 119732034 119732244 -24550245 - AluSx SINE Alu -95 217 1 418 256 29 22 chr12 119732246 119732383 -24550106 - L1ME4a LINE L1 -385 5736 5599 4247 144 17 62 chr12 119732400 119732969 -24549520 - L1MB7 LINE L1 -13 6171 5578 1996 130 3 0 chr12 119732969 119733261 -24549228 + AluSx SINE Alu 1 293 -19 4247 144 17 62 chr12 119733261 119733453 -24549036 - L1MB7 LINE L1 -606 5578 5450 1554 161 0 90 chr12 119733453 119733662 -24548827 - AluJo SINE Alu -10 302 131 221 0 0 33 chr12 119733662 119733692 -24548797 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1554 161 0 90 chr12 119733692 119733804 -24548685 - AluJo SINE Alu -181 131 10 4247 144 17 62 chr12 119733804 119733901 -24548588 - L1MB7 LINE L1 -734 5450 5350 1049 168 58 0 chr12 119734058 119734266 -24548223 - L1MB7 LINE L1 -20 6164 5945 459 380 87 15 chr12 119734273 119734663 -24547826 - L1ME4a LINE L1 -757 5389 4972 1895 114 21 0 chr12 119735266 119735546 -24546943 - AluSx SINE Alu -16 296 11 418 253 0 0 chr12 119737424 119737511 -24544978 - MIR SINE MIR -89 173 87 197 362 21 28 chr12 119737866 119738007 -24544482 - L2 LINE L2 -111 3161 3022 349 240 260 5 chr12 119738634 119738834 -24543655 - L2 LINE L2 -245 3068 2818 2002 95 7 30 chr12 119738860 119739039 -24543450 - AluSg SINE Alu 0 310 137 2189 107 3 3 chr12 119739039 119739349 -24543140 - AluSp SINE Alu -3 310 1 2002 95 7 30 chr12 119739349 119739483 -24543006 - AluSg SINE Alu -173 137 1 523 173 192 0 chr12 119739488 119739592 -24542897 - FRAM SINE Alu -22 154 31 190 378 22 0 chr12 119739982 119740072 -24542417 - MER5A DNA MER1_type -8 181 90 203 205 0 0 chr12 119740416 119740455 -24542034 + L2 LINE L2 3221 3259 -13 499 148 102 0 chr12 119740914 119741002 -24541487 + FRAM SINE Alu 60 156 -20 1351 128 104 32 chr12 119741028 119741278 -24541211 + AluJo SINE Alu 35 302 -10 204 230 149 0 chr12 119741280 119741354 -24541135 - MIR SINE MIR -79 129 45 319 103 191 15 chr12 119741578 119741646 -24540843 + MER103 DNA DNA 9 88 -78 875 135 0 0 chr12 119741836 119741962 -24540527 - AluSg/x SINE Alu -17 293 168 238 259 71 12 chr12 119742169 119742254 -24540235 - MIR SINE MIR -117 145 56 201 288 68 0 chr12 119743137 119743196 -24539293 - MIR SINE MIR -90 172 110 221 301 92 4 chr12 119743710 119743801 -24538688 - MIR SINE MIR -69 139 49 2175 103 0 13 chr12 119743808 119744119 -24538370 + AluSx SINE Alu 1 307 -5 225 0 0 0 chr12 119747447 119747472 -24535017 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 2135 98 20 0 chr12 119749826 119750122 -24532367 - AluSq SINE Alu -11 302 1 41 36 0 0 chr12 119752117 119752172 -24530317 + AT_rich Low_complexity Low_complexity 1 55 0 189 0 0 0 chr12 119752329 119752350 -24530139 + (T)n Simple_repeat Simple_repeat 1 21 0 195 42 0 0 chr12 119753322 119753346 -24529143 + (CTG)n Simple_repeat Simple_repeat 2 25 0 2314 66 7 3 chr12 119756643 119756947 -24525542 - AluY SINE Alu -6 305 1 1908 98 88 18 chr12 119758042 119758327 -24524162 - AluSx SINE Alu -7 305 1 2167 91 10 0 chr12 119759342 119759639 -24522850 - AluSx SINE Alu -12 300 1 1864 95 77 0 chr12 119759642 119759916 -24522573 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 119759916 119759944 -24522545 + AT_rich Low_complexity Low_complexity 1 28 0 2039 93 35 7 chr12 119759984 119760273 -24522216 - AluSx SINE Alu -15 297 1 2217 87 0 0 chr12 119761087 119761404 -24521085 + AluSq SINE Alu 1 317 0 1969 86 4 12 chr12 119761584 119761845 -24520644 + AluSg1 SINE Alu 45 299 -10 247 214 0 0 chr12 119762863 119762919 -24519570 - L1MC4 LINE L1 -1339 6703 6648 1842 135 64 0 chr12 119763195 119763476 -24519013 - AluSx SINE Alu -13 299 1 2113 133 0 3 chr12 119763693 119763987 -24518502 - AluSx SINE Alu -19 293 1 324 0 0 0 chr12 119764147 119764183 -24518306 + (TG)n Simple_repeat Simple_repeat 2 37 0 381 22 0 0 chr12 119764224 119764270 -24518219 + (TG)n Simple_repeat Simple_repeat 2 47 0 415 224 35 9 chr12 119765129 119765245 -24517244 + L1ME4a LINE L1 5974 6092 -29 2209 116 7 0 chr12 119765389 119765692 -24516797 + AluSg SINE Alu 1 305 -5 2337 93 3 6 chr12 119765784 119766097 -24516392 + AluSx SINE Alu 1 312 0 2368 65 0 10 chr12 119766116 119766407 -24516082 + AluY SINE Alu 1 288 -23 37 23 0 0 chr12 119766789 119766833 -24515656 + AT_rich Low_complexity Low_complexity 1 44 0 1556 164 6 59 chr12 119767030 119767354 -24515135 - AluJo SINE Alu -5 307 1 2368 92 0 3 chr12 119768593 119768899 -24513590 - AluSg SINE Alu -5 305 1 23 0 0 0 chr12 119768956 119768979 -24513510 + AT_rich Low_complexity Low_complexity 1 23 0 245 268 61 0 chr12 119769015 119769097 -24513392 - L1ME LINE L1 -310 5860 5774 252 333 22 54 chr12 119770697 119770943 -24511546 + L2 LINE L2 2781 3078 -194 23 0 0 0 chr12 119771777 119771800 -24510689 + AT_rich Low_complexity Low_complexity 1 23 0 309 210 0 0 chr12 119771820 119771882 -24510607 + MSTB2 LTR MaLR 1 62 -395 1526 203 0 7 chr12 119771882 119772172 -24510317 + AluJb SINE Alu 1 288 -24 240 255 21 83 chr12 119772423 119772460 -24510029 + L1M4 LINE L1 4450 4488 -1658 2061 118 10 26 chr12 119772460 119772773 -24509716 - AluSx SINE Alu -4 308 1 240 255 21 83 chr12 119772773 119772880 -24509609 + L1M4 LINE L1 4488 4585 -1561 1853 166 0 10 chr12 119772890 119773198 -24509291 + AluJb SINE Alu 1 305 -7 1129 169 13 70 chr12 119773235 119773536 -24508953 + L1MC5 LINE L1 6960 7243 -718 579 251 49 27 chr12 119773585 119773808 -24508681 + L1MC5 LINE L1 7215 7442 -519 1541 186 86 0 chr12 119773862 119774142 -24508347 + AluJb SINE Alu 1 304 -8 659 183 0 61 chr12 119774193 119774360 -24508129 + FLAM_C SINE Alu 21 179 0 1029 163 0 6 chr12 119774362 119774522 -24507967 + AluJo/FRAM SINE Alu 141 299 -3 396 211 0 0 chr12 119774533 119774604 -24507885 + L1MC5 LINE L1 7713 7783 -178 1733 104 115 11 chr12 119774701 119774831 -24507658 + AluSg SINE Alu 1 116 -194 2490 51 0 3 chr12 119774831 119775123 -24507366 + AluY SINE Alu 1 291 -20 1733 104 115 11 chr12 119775123 119775261 -24507228 + AluSg SINE Alu 116 297 -13 1118 167 0 6 chr12 119775377 119775557 -24506932 - AluSg/x SINE Alu 0 310 132 1684 189 0 4 chr12 119775872 119776152 -24506337 - AluJo SINE Alu -33 279 1 230 127 79 32 chr12 119776153 119776216 -24506273 + L1ME1 LINE L1 3890 3955 -2191 1755 246 235 14 chr12 119776255 119776960 -24505529 + L1ME1 LINE L1 4021 4569 -1577 2015 121 10 45 chr12 119776960 119777274 -24505215 + AluSq SINE Alu 1 303 -10 1755 246 235 14 chr12 119777274 119777599 -24504890 + L1ME1 LINE L1 4569 5279 -867 1428 160 3 116 chr12 119777656 119777993 -24504496 - AluJb SINE Alu -11 301 3 2011 129 4 0 chr12 119778024 119778303 -24504186 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr12 119778303 119778326 -24504163 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1780 206 41 90 chr12 119778326 119778624 -24503865 + L1ME1 LINE L1 5319 5581 -585 2251 115 0 6 chr12 119778624 119778936 -24503553 + AluSx SINE Alu 1 310 -2 1780 206 41 90 chr12 119778936 119779170 -24503319 + L1ME1 LINE L1 5581 5825 -341 1339 97 0 127 chr12 119779170 119779398 -24503091 + AluSx SINE Alu 1 199 -113 1415 84 139 0 chr12 119779527 119779729 -24502760 - MER30 DNA MER1_type 0 230 1 24 0 0 0 chr12 119779748 119779772 -24502717 + AT_rich Low_complexity Low_complexity 1 24 0 666 148 148 0 chr12 119779777 119779885 -24502604 + FLAM_C SINE Alu 1 124 -9 215 102 0 61 chr12 119779898 119779947 -24502542 + (A)n Simple_repeat Simple_repeat 1 46 0 412 244 110 53 chr12 119779965 119780174 -24502315 + L1ME1 LINE L1 5942 6162 -4 425 94 0 0 chr12 119780272 119780325 -24502164 - AluJ/FLAM SINE Alu -220 92 40 1588 121 58 4 chr12 119780342 119780582 -24501907 + AluSg SINE Alu 49 301 -9 1407 188 20 45 chr12 119780582 119780928 -24501561 + L1M4 LINE L1 4874 5212 -934 955 138 0 0 chr12 119780931 119781061 -24501428 + AluSq/x SINE Alu 5 134 -178 1599 171 48 3 chr12 119781062 119781355 -24501134 + AluJb SINE Alu 1 306 -6 1017 184 191 54 chr12 119781355 119781561 -24500928 + L1M4 LINE L1 5432 5609 -569 2017 123 20 20 chr12 119781561 119781861 -24500628 - AluSx SINE Alu -12 300 1 1017 184 191 54 chr12 119781861 119781969 -24500520 + L1M4 LINE L1 5609 5789 -389 851 132 0 0 chr12 119781969 119782090 -24500399 + AluSq/x SINE Alu 1 121 -192 2440 77 3 0 chr12 119782090 119782390 -24500099 - AluY SINE Alu -8 303 3 1567 165 4 11 chr12 119782838 119783088 -24499401 + AluJb SINE Alu 34 283 -29 438 20 0 0 chr12 119783088 119783139 -24499350 + (CA)n Simple_repeat Simple_repeat 2 52 0 1567 165 4 11 chr12 119783139 119783154 -24499335 + AluJb SINE Alu 283 297 -15 275 23 23 0 chr12 119783353 119783396 -24499093 - AluSx SINE Alu 0 300 257 1125 144 0 0 chr12 119783396 119783556 -24498933 - AluSx SINE Alu -152 160 1 1516 191 14 17 chr12 119783689 119783983 -24498506 - AluJb SINE Alu -19 293 1 593 165 157 9 chr12 119784185 119784300 -24498189 - FLAM_C SINE Alu -1 132 1 2130 94 3 14 chr12 119784310 119784635 -24497854 - AluSx SINE Alu 0 322 1 1759 170 14 3 chr12 119784645 119784927 -24497562 - AluJo SINE Alu -27 285 1 26 0 0 0 chr12 119786016 119786042 -24496447 + AT_rich Low_complexity Low_complexity 1 26 0 1572 179 111 7 chr12 119786077 119786384 -24496105 + MER2 DNA MER2_type 1 339 -6 192 358 30 0 chr12 119786424 119786491 -24495998 - MIR SINE MIR -81 127 59 1693 149 59 28 chr12 119786983 119787272 -24495217 - AluSx SINE Alu -14 298 1 2004 121 7 0 chr12 119787353 119787648 -24494841 - AluSx SINE Alu 0 307 11 239 299 169 13 chr12 119788906 119788983 -24493506 - L2 LINE L2 -16 3256 3168 2405 68 7 0 chr12 119789232 119789526 -24492963 + AluY SINE Alu 1 296 -15 744 198 0 0 chr12 119789539 119789655 -24492834 + FLAM_C SINE Alu 1 116 -27 220 26 26 26 chr12 119789661 119789699 -24492790 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 2048 123 7 26 chr12 119789820 119790130 -24492359 + AluSx SINE Alu 1 304 -8 324 305 23 34 chr12 119790138 119790315 -24492174 - L2 LINE L2 -518 2796 2622 6663 194 63 17 chr12 119790446 119790875 -24491614 + L1MA3 LINE L1 17 425 -7140 1996 126 27 3 chr12 119790875 119791168 -24491321 + AluSp SINE Alu 1 300 -13 6663 194 63 17 chr12 119791168 119792301 -24490188 + L1MA3 LINE L1 425 2023 -5542 2310 108 0 0 chr12 119792301 119792606 -24489883 + AluSg SINE Alu 1 305 -5 6663 194 63 17 chr12 119792606 119793036 -24489453 + L1MA3 LINE L1 2023 2432 -5133 2158 123 3 3 chr12 119793040 119793341 -24489148 + AluSx SINE Alu 5 305 -7 3607 150 25 58 chr12 119793341 119793530 -24488959 + L1MA3 LINE L1 2994 3188 -4377 2202 99 7 3 chr12 119793530 119793823 -24488666 - AluSg SINE Alu -14 296 3 192 40 0 0 chr12 119793823 119793848 -24488641 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2105 100 11 0 chr12 119793848 119794129 -24488360 - AluSx SINE Alu -28 284 1 3607 150 25 58 chr12 119794129 119794325 -24488164 + L1MA3 LINE L1 3186 3387 -4178 2328 101 0 0 chr12 119794325 119794623 -24487866 - AluSg SINE Alu -12 298 1 3607 150 25 58 chr12 119794623 119794923 -24487566 + L1MA3 LINE L1 3387 3695 -3870 2329 95 0 7 chr12 119794923 119795227 -24487262 + AluSq SINE Alu 1 302 -11 3607 150 25 58 chr12 119795227 119795756 -24486733 + L1MA3 LINE L1 3695 4172 -3393 1432 189 3 50 chr12 119795766 119796099 -24486390 + AluJb SINE Alu 6 312 0 12521 166 30 33 chr12 119796099 119796149 -24486340 + L1MA3 LINE L1 4186 4235 -3330 2339 105 0 13 chr12 119796149 119796464 -24486025 + AluSx SINE Alu 1 311 -1 12521 166 30 33 chr12 119796464 119797634 -24484855 + L1MA3 LINE L1 4235 5407 -2158 2465 76 0 0 chr12 119797634 119797936 -24484553 + AluY SINE Alu 1 302 -9 12521 166 30 33 chr12 119797936 119799321 -24483168 + L1MA3 LINE L1 5407 6785 -780 1525 138 119 8 chr12 119799321 119799598 -24482891 + AluSg SINE Alu 1 305 0 795 168 0 0 chr12 119799613 119799726 -24482763 + FLAM_C SINE Alu 2 114 -29 4480 133 19 6 chr12 119799732 119800434 -24482055 + L1MA3 LINE L1 6782 7492 -232 23 42 0 21 chr12 119800463 119800492 -24481997 + AT_rich Low_complexity Low_complexity 1 30 -17 2255 101 0 0 chr12 119800492 119800788 -24481701 + AluSc SINE Alu 1 296 -13 23 42 0 21 chr12 119800788 119800806 -24481683 + AT_rich Low_complexity Low_complexity 30 47 0 1486 159 4 12 chr12 119800806 119801064 -24481425 + L1MA3 LINE L1 7469 7724 0 386 171 45 81 chr12 119801775 119801794 -24480695 - MIR SINE MIR -25 237 219 1657 199 3 3 chr12 119801794 119802091 -24480398 - AluJb SINE Alu -15 297 1 386 171 45 81 chr12 119802091 119802182 -24480307 - MIR SINE MIR -43 219 131 2254 112 0 3 chr12 119802324 119802629 -24479860 - AluSq SINE Alu -8 305 2 543 332 87 9 chr12 119802722 119802951 -24479538 - MIR SINE MIR 0 262 16 523 322 57 0 chr12 119803216 119803393 -24479096 + MIR SINE MIR 62 248 -14 27 0 0 0 chr12 119803446 119803473 -24479016 + AT_rich Low_complexity Low_complexity 1 27 0 2016 130 40 13 chr12 119803488 119803789 -24478700 - AluSx SINE Alu -3 309 1 763 215 5 67 chr12 119804055 119804202 -24478287 + L1MB8 LINE L1 4757 4889 -1257 1824 128 24 24 chr12 119804202 119804492 -24477997 - AluSx SINE Alu -22 290 1 763 215 5 67 chr12 119804492 119804553 -24477936 + L1MB8 LINE L1 4889 4952 -1194 734 106 0 0 chr12 119804770 119804874 -24477615 - MER41A LTR ERV1 0 554 451 1320 154 89 28 chr12 119804875 119805122 -24477367 + AluJb SINE Alu 35 296 -16 4637 168 37 29 chr12 119805126 119806287 -24476202 + L1MB8 LINE L1 4989 6166 -12 401 101 76 0 chr12 119806287 119806360 -24476129 + L1MB7 LINE L1 6100 6184 0 7435 43 5 34 chr12 119806529 119808070 -24474419 + SVA Other Other 1 1381 -5 2337 103 0 0 chr12 119808341 119808643 -24473846 - AluSx SINE Alu -7 305 4 216 149 0 128 chr12 119810513 119810560 -24471929 + L2 LINE L2 3014 3054 -259 1602 93 0 10 chr12 119810723 119810928 -24471561 - AluSq SINE Alu -110 203 1 2242 96 0 20 chr12 119811360 119811663 -24470826 - AluSg SINE Alu -13 297 1 1956 131 71 0 chr12 119811868 119812150 -24470339 - AluSq SINE Alu -11 302 1 210 37 0 0 chr12 119812201 119812228 -24470261 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2492 72 0 7 chr12 119812351 119812655 -24469834 - AluY SINE Alu -9 302 1 202 200 0 0 chr12 119813504 119813544 -24468945 + (CA)n Simple_repeat Simple_repeat 2 41 0 24 0 0 0 chr12 119813647 119813671 -24468818 + AT_rich Low_complexity Low_complexity 1 24 0 1738 99 141 11 chr12 119814424 119814687 -24467802 - AluSg1 SINE Alu -12 297 1 203 283 106 44 chr12 119818920 119819033 -24463456 + L2 LINE L2 2350 2469 -845 240 254 34 0 chr12 119819373 119819432 -24463057 + L2 LINE L2 3022 3082 -190 2371 87 0 0 chr12 119820270 119820570 -24461919 + AluSc SINE Alu 1 300 -9 221 313 84 38 chr12 119821452 119821583 -24460906 + MIR3 SINE MIR 3 139 -69 350 47 125 0 chr12 119821685 119821749 -24460740 - MER41B LTR ERV1 -94 541 470 2323 92 0 0 chr12 119822228 119822523 -24459966 + AluY SINE Alu 1 295 -16 2236 104 0 3 chr12 119822530 119822818 -24459671 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr12 119822874 119822895 -24459594 + AT_rich Low_complexity Low_complexity 1 21 0 1557 81 77 0 chr12 119822898 119823107 -24459382 + AluSg SINE Alu 1 225 -85 234 77 0 0 chr12 119823108 119823147 -24459342 + AluSg SINE Alu 262 300 -2 366 291 106 6 chr12 119823160 119823339 -24459150 - L1MC4a LINE L1 -1908 5900 5704 2216 124 0 6 chr12 119823341 119823655 -24458834 + AluSx SINE Alu 1 312 0 886 180 0 0 chr12 119823680 119823819 -24458670 + FLAM_C SINE Alu 1 139 -4 480 245 28 14 chr12 119823867 119824010 -24458479 - L1MC4a LINE L1 -472 5649 5505 790 188 0 0 chr12 119824361 119824494 -24457995 - FLAM_A SINE Alu 0 133 1 2268 92 7 3 chr12 119825586 119825881 -24456608 - AluSg SINE Alu -14 296 1 2309 113 0 0 chr12 119825975 119826276 -24456213 + AluSc SINE Alu 1 301 -8 2218 113 3 0 chr12 119826303 119826604 -24455885 - AluSx SINE Alu -10 302 1 761 170 129 0 chr12 119828871 119829018 -24453471 - FRAM SINE Alu 0 166 1 2379 86 0 0 chr12 119830432 119830735 -24451754 + AluY SINE Alu 1 303 -8 2062 90 32 4 chr12 119830743 119831021 -24451468 + AluSp SINE Alu 1 286 -27 2235 82 6 60 chr12 119831032 119831349 -24451140 + AluSc SINE Alu 1 300 -9 1395 210 38 75 chr12 119831697 119831969 -24450520 - Charlie4a DNA MER1_type -1454 507 227 645 240 0 0 chr12 119831969 119832090 -24450399 + FLAM_A SINE Alu 1 121 -12 2165 98 7 0 chr12 119832098 119832383 -24450106 + AluSx SINE Alu 1 287 -25 1395 210 38 75 chr12 119832383 119832624 -24449865 - Charlie4a DNA MER1_type -1741 220 4 1667 160 70 30 chr12 119833159 119833413 -24449076 + MER2 DNA MER2_type 1 272 -72 1663 170 32 32 chr12 119833413 119833724 -24448765 - AluSx SINE Alu 0 312 2 1667 160 70 30 chr12 119833724 119833800 -24448689 + MER2 DNA MER2_type 272 344 0 59 27 0 0 chr12 119833960 119834033 -24448456 + AT_rich Low_complexity Low_complexity 1 73 0 1444 187 60 8 chr12 119834041 119834308 -24448181 + AluSx SINE Alu 9 289 -23 1201 174 100 68 chr12 119834754 119835035 -24447454 + AluJo SINE Alu 3 292 -20 2051 115 3 0 chr12 119835246 119835541 -24446948 + AluSg SINE Alu 5 300 -10 2761 7 0 0 chr12 119835618 119835916 -24446573 + AluYa5 SINE Alu 1 298 -13 202 306 90 52 chr12 119836010 119836144 -24446345 - L2 LINE L2 -563 2751 2613 717 178 0 33 chr12 119836279 119836431 -24446058 + L1MB7 LINE L1 5428 5574 -610 1610 171 60 116 chr12 119836535 119836677 -24445812 + L1MB7 LINE L1 5572 5720 -464 2269 108 3 7 chr12 119836677 119836984 -24445505 - AluSx SINE Alu -6 306 1 1610 171 60 116 chr12 119836984 119837202 -24445287 + L1MB7 LINE L1 5720 5891 -293 2145 126 7 0 chr12 119837202 119837504 -24444985 + AluSx SINE Alu 1 304 -8 1610 171 60 116 chr12 119837504 119837710 -24444779 + L1MB7 LINE L1 5891 6107 -77 1709 178 16 16 chr12 119837713 119838016 -24444473 + AluJo SINE Alu 1 303 -9 1424 175 0 13 chr12 119838318 119838552 -24443937 - AluJb SINE Alu -81 231 1 780 163 7 7 chr12 119839101 119839236 -24443253 + AluJo SINE Alu 1 135 -177 234 234 0 0 chr12 119839238 119839285 -24443204 + GA-rich Low_complexity Low_complexity 2 48 0 2487 73 0 6 chr12 119839365 119839678 -24442811 + AluY SINE Alu 1 311 0 21 36 0 0 chr12 119840429 119840457 -24442032 + AT_rich Low_complexity Low_complexity 1 28 0 331 274 129 68 chr12 119840537 119840596 -24441893 - L1M4 LINE L1 -924 5222 5168 2222 114 10 7 chr12 119840596 119840895 -24441594 - AluSx SINE Alu -12 300 1 331 274 129 68 chr12 119840895 119841160 -24441329 - L1M4 LINE L1 -978 5168 4878 2268 76 66 0 chr12 119841243 119841532 -24440957 - AluSp SINE Alu -5 308 1 227 81 0 0 chr12 119841636 119841673 -24440816 - L1M4 LINE L1 -1494 4652 4616 24 0 0 0 chr12 119841676 119841700 -24440789 + AT_rich Low_complexity Low_complexity 1 24 0 1757 112 109 0 chr12 119841700 119841967 -24440522 - AluSq SINE Alu -17 296 1 1629 98 47 4 chr12 119842137 119842371 -24440118 - AluSx SINE Alu -19 293 50 1660 183 25 0 chr12 119842377 119842661 -24439828 - AluJb SINE Alu -21 291 1 27 0 0 0 chr12 119842776 119842803 -24439686 + AT_rich Low_complexity Low_complexity 1 27 0 1281 126 0 0 chr12 119843331 119843505 -24438984 - AluSg/x SINE Alu -10 300 127 1712 171 7 17 chr12 119843698 119843996 -24438493 + AluJo SINE Alu 5 299 -13 365 266 35 70 chr12 119844278 119844421 -24438068 - L2 LINE L2 -1 3271 3134 2449 75 7 0 chr12 119844777 119845084 -24437405 + AluY SINE Alu 1 309 -2 1544 70 5 0 chr12 119845214 119845401 -24437088 + AluSq SINE Alu 1 188 -125 549 138 0 0 chr12 119845401 119845488 -24437001 + AluS SINE Alu 221 307 -5 1725 171 23 23 chr12 119845580 119845879 -24436610 + AluJb SINE Alu 1 299 -13 607 215 55 12 chr12 119846210 119846373 -24436116 - MER58B DNA MER1_type 0 341 172 200 272 0 37 chr12 119846540 119846621 -24435868 + A-rich Low_complexity Low_complexity 3 80 0 2203 115 0 0 chr12 119847046 119847334 -24435155 + AluSg SINE Alu 1 288 -22 2321 101 3 0 chr12 119847343 119847649 -24434840 + AluSp SINE Alu 1 307 -6 21 0 0 0 chr12 119847674 119847695 -24434794 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr12 119847736 119847760 -24434729 + (T)n Simple_repeat Simple_repeat 1 24 0 2078 141 3 0 chr12 119847810 119848107 -24434382 + AluSx SINE Alu 1 298 -14 462 256 67 33 chr12 119848207 119848387 -24434102 + MIR SINE MIR 77 262 0 1794 104 46 19 chr12 119848659 119848919 -24433570 - AluSx SINE Alu -45 267 1 331 225 108 67 chr12 119848993 119849113 -24433376 + MER5B DNA MER1_type 54 178 0 1549 108 0 43 chr12 119849228 119849459 -24433030 + AluSg/x SINE Alu 84 304 -6 2313 88 7 7 chr12 119849683 119849990 -24432499 + AluSg SINE Alu 3 309 -1 2377 87 0 0 chr12 119850916 119851215 -24431274 + AluSc SINE Alu 1 299 -10 2175 123 10 10 chr12 119851772 119852080 -24430409 - AluSx SINE Alu -4 308 1 1314 184 22 4 chr12 119853200 119853472 -24429017 + MER2 DNA MER2_type 1 277 -68 288 0 0 0 chr12 119853472 119853504 -24428985 + (A)n Simple_repeat Simple_repeat 1 32 0 1667 186 3 14 chr12 119853504 119853800 -24428689 - AluJb SINE Alu -19 293 1 401 197 0 0 chr12 119853809 119853875 -24428614 + MER2 DNA MER2_type 280 345 0 647 183 8 8 chr12 119854157 119854283 -24428206 - MER46A DNA MER2_type 0 236 111 531 219 91 27 chr12 119854544 119854731 -24427758 + L1ME1 LINE L1 5932 6130 -36 2502 117 22 5 chr12 119855224 119855593 -24426896 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr12 119855827 119855851 -24426638 + AT_rich Low_complexity Low_complexity 1 24 0 870 176 27 0 chr12 119856131 119856279 -24426210 + FRAM SINE Alu 1 150 -26 2275 112 0 0 chr12 119856435 119856738 -24425751 + AluSg SINE Alu 1 303 -7 305 290 80 0 chr12 119857228 119857328 -24425161 + MIR3 SINE MIR 100 207 -1 488 320 27 7 chr12 119857457 119857604 -24424885 - MIR SINE MIR -111 151 2 1867 171 3 0 chr12 119858416 119858702 -24423787 + AluJb SINE Alu 2 288 -24 470 244 17 0 chr12 119858718 119858837 -24423652 + L1MC5 LINE L1 7774 7894 -67 228 249 81 67 chr12 119858903 119859029 -24423460 + L1MC5 LINE L1 7320 7452 -509 1860 100 130 0 chr12 119859029 119859298 -24423191 - AluSx SINE Alu -8 304 1 228 249 81 67 chr12 119859298 119859380 -24423109 + L1MC5 LINE L1 7452 7531 -430 2244 102 6 16 chr12 119859391 119859704 -24422785 + AluSg SINE Alu 1 310 0 607 285 22 0 chr12 119859878 119860057 -24422432 + L1M4b LINE L1 862 1044 -5815 1053 157 39 10 chr12 119860150 119860354 -24422135 - MER2 DNA MER2_type -134 211 2 1336 206 123 48 chr12 119860361 119860841 -24421648 + L1M4b LINE L1 1051 1566 -5293 233 159 0 0 chr12 119860842 119860886 -24421603 + AluY SINE Alu 1 44 -258 1521 93 0 28 chr12 119860886 119861100 -24421389 + AluY SINE Alu 90 297 -14 1967 120 7 23 chr12 119861112 119861413 -24421076 + AluSq SINE Alu 1 296 -17 1737 155 60 0 chr12 119861451 119861716 -24420773 + AluSx SINE Alu 1 281 -31 2300 98 0 0 chr12 119861716 119862010 -24420479 - AluY SINE Alu -16 295 1 1312 213 49 14 chr12 119862052 119862338 -24420151 + AluJo SINE Alu 2 297 -15 2298 108 3 0 chr12 119862338 119862645 -24419844 + AluSp SINE Alu 1 308 -5 2356 178 49 125 chr12 119862645 119863447 -24419042 + L1MC4 LINE L1 7138 7886 -156 23 33 0 0 chr12 119863447 119863477 -24419012 + AT_rich Low_complexity Low_complexity 1 30 0 2356 178 49 125 chr12 119863477 119863623 -24418866 + L1MC4 LINE L1 7886 8041 -1 195 325 121 45 chr12 119863710 119863867 -24418622 + L2 LINE L2 2995 3163 -109 334 346 83 6 chr12 119863957 119864113 -24418376 - MER91A DNA MER1_type -21 175 8 653 212 21 95 chr12 119864291 119864480 -24418009 + MER58C DNA MER1_type 38 212 -3 686 207 8 0 chr12 119864543 119864664 -24417825 + FLAM_A SINE Alu 1 122 -11 348 148 16 16 chr12 119864721 119864782 -24417707 - U7 snRNA snRNA -1 62 2 847 181 0 0 chr12 119864789 119864922 -24417567 - FLAM_C SINE Alu 0 133 1 1345 156 28 211 chr12 119865107 119865613 -24416876 + Tigger1 DNA MER2_type 1 413 -2005 1937 144 0 0 chr12 119865613 119865911 -24416578 + AluSx SINE Alu 1 298 -14 3271 132 49 32 chr12 119865911 119866050 -24416439 + Tigger1 DNA MER2_type 1316 1451 -967 2266 79 3 19 chr12 119866050 119866365 -24416124 + AluSp SINE Alu 1 310 -3 3271 132 49 32 chr12 119866365 119866533 -24415956 + Tigger1 DNA MER2_type 1451 1615 -803 2237 102 0 3 chr12 119866533 119866837 -24415652 - AluSq SINE Alu -10 303 1 3271 132 49 32 chr12 119866837 119867118 -24415371 + Tigger1 DNA MER2_type 1615 1915 -503 2131 112 0 0 chr12 119867119 119867414 -24415075 + AluSg SINE Alu 1 295 -15 1940 128 28 0 chr12 119867431 119867721 -24414768 + AluSx SINE Alu 1 298 -14 2155 119 0 0 chr12 119867878 119868189 -24414300 + AluSx SINE Alu 1 311 -1 398 270 73 15 chr12 119868493 119868630 -24413859 + L2 LINE L2 2962 3106 -207 266 0 29 0 chr12 119868886 119868920 -24413569 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 703 238 12 115 chr12 119869050 119869294 -24413195 + MIR SINE MIR 43 261 -1 1575 161 51 4 chr12 119869346 119869619 -24412870 + AluJb SINE Alu 1 286 -26 877 211 30 10 chr12 119869804 119870003 -24412486 + MER3 DNA MER1_type 5 207 -2 218 266 124 47 chr12 119870012 119870181 -24412308 - L3 LINE CR1 -113 1464 1283 417 204 95 20 chr12 119870181 119870328 -24412161 + L1MC5 LINE L1 7768 7925 -36 577 242 227 0 chr12 119870886 119871084 -24411405 - MIR SINE MIR 0 262 20 441 210 55 125 chr12 119871566 119871635 -24410854 + MER58C DNA MER1_type 30 102 -2318 2074 113 21 0 chr12 119871635 119871926 -24410563 + AluSx SINE Alu 1 297 -15 441 210 55 125 chr12 119871926 119872017 -24410472 + MER58C DNA MER1_type 102 176 -2244 2026 127 0 3 chr12 119872017 119872317 -24410172 + AluSq SINE Alu 1 299 -14 441 210 55 125 chr12 119872317 119872355 -24410134 + MER58C DNA MER1_type 176 215 0 28 0 0 0 chr12 119872938 119872966 -24409523 + AT_rich Low_complexity Low_complexity 1 28 0 1968 115 0 10 chr12 119873084 119873395 -24409094 - AluSx SINE Alu 0 308 1 599 266 45 41 chr12 119873444 119873688 -24408801 + MIR SINE MIR 6 250 -12 192 77 0 0 chr12 119873759 119873785 -24408704 + (T)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chr12 119873847 119873877 -24408612 + AT_rich Low_complexity Low_complexity 1 30 0 2097 91 37 7 chr12 119873935 119874233 -24408256 + AluY SINE Alu 1 307 -4 1702 164 16 30 chr12 119874318 119874622 -24407867 - AluJo SINE Alu -12 300 1 457 283 51 14 chr12 119874791 119874929 -24407560 + MIR SINE MIR 60 202 -60 892 201 54 34 chr12 119875130 119875369 -24407120 - AluJo SINE Alu -56 256 13 267 320 134 0 chr12 119875507 119875604 -24406885 + L2 LINE L2 3186 3295 -18 2019 93 11 0 chr12 119875701 119875980 -24406509 + AluSq SINE Alu 1 282 -31 474 33 0 0 chr12 119875980 119876040 -24406449 + (CATAA)n Simple_repeat Simple_repeat 3 62 0 1648 159 30 34 chr12 119876060 119876356 -24406133 + AluSx SINE Alu 1 295 -17 967 179 11 6 chr12 119876396 119876575 -24405914 - AluSg/x SINE Alu -26 286 107 2048 71 7 11 chr12 119876576 119876886 -24405603 + AluY SINE Alu 1 309 0 1359 213 13 54 chr12 119876914 119877084 -24405405 - AluJo SINE Alu 0 302 149 1523 155 4 8 chr12 119877084 119877349 -24405140 - AluSx SINE Alu -14 298 35 1359 213 13 54 chr12 119877349 119877493 -24404996 - AluJo SINE Alu -153 149 1 1973 117 17 0 chr12 119878386 119878686 -24403803 - AluSx SINE Alu -7 305 1 201 196 34 17 chr12 119878694 119878814 -24403675 + CT-rich Low_complexity Low_complexity 1 122 0 338 145 0 29 chr12 119878827 119878896 -24403593 + (TCCC)n Simple_repeat Simple_repeat 1 67 0 470 208 94 0 chr12 119878897 119878993 -24403496 - FLAM_A SINE Alu -15 127 23 1497 162 0 87 chr12 119879017 119879350 -24403139 - AluJo SINE Alu -8 304 1 681 186 26 0 chr12 119879432 119879545 -24402944 + FLAM_A SINE Alu 1 116 -17 2111 94 7 7 chr12 119879545 119879843 -24402646 + AluSx SINE Alu 1 298 -14 906 190 81 103 chr12 119879845 119879981 -24402508 - L1ME1 LINE L1 -315 5851 5714 2321 83 3 0 chr12 119879981 119880282 -24402207 + AluSp SINE Alu 1 302 -11 906 190 81 103 chr12 119880282 119880496 -24401993 - L1ME1 LINE L1 -452 5714 5439 1572 163 21 10 chr12 119880496 119880784 -24401705 - AluJb SINE Alu -21 291 1 906 190 81 103 chr12 119880784 119880875 -24401614 - L1ME1 LINE L1 -727 5439 5348 2475 148 46 0 chr12 119880888 119881327 -24401162 - Tigger3(Golem) DNA MER2_type -4 3025 2567 2251 93 0 3 chr12 119881328 119881629 -24400860 - AluSx SINE Alu -12 300 1 819 218 21 90 chr12 119881658 119881892 -24400597 - AluJo SINE Alu -92 220 3 24 0 0 0 chr12 119882126 119882150 -24400339 + AT_rich Low_complexity Low_complexity 1 24 0 1379 172 112 0 chr12 119882157 119882425 -24400064 + AluJb SINE Alu 1 298 -14 192 77 0 0 chr12 119882526 119882552 -24399937 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2021 120 17 0 chr12 119882569 119882861 -24399628 + AluSq SINE Alu 1 297 -16 2153 84 13 7 chr12 119882876 119883174 -24399315 + AluSq SINE Alu 1 300 -13 2328 89 0 0 chr12 119883271 119883575 -24398914 + AluSx SINE Alu 1 304 -8 2108 98 0 38 chr12 119883847 119884165 -24398324 - AluSx SINE Alu -6 306 1 207 100 0 0 chr12 119884381 119884411 -24398078 + (A)n Simple_repeat Simple_repeat 1 30 0 489 287 96 28 chr12 119884726 119885008 -24397481 + L2 LINE L2 3006 3306 -7 1083 91 0 0 chr12 119885113 119885256 -24397233 - AluSg/x SINE Alu -16 296 154 409 297 75 5 chr12 119885910 119886122 -24396367 + L1ME LINE L1 5549 5775 -346 1991 124 3 0 chr12 119886130 119886428 -24396061 + AluSx SINE Alu 1 299 -13 967 78 0 49 chr12 119886544 119886686 -24395803 + AluSq/x SINE Alu 1 135 -177 1885 117 3 21 chr12 119886686 119886976 -24395513 + AluSx SINE Alu 1 285 -27 405 0 0 0 chr12 119886976 119887021 -24395468 + (CA)n Simple_repeat Simple_repeat 2 46 0 29 60 0 0 chr12 119889478 119889528 -24392961 + GC_rich Low_complexity Low_complexity 1 50 0 582 15 0 0 chr12 119889724 119889791 -24392698 + (CTG)n Simple_repeat Simple_repeat 1 67 0 25 90 0 0 chr12 119889882 119889949 -24392540 + GC_rich Low_complexity Low_complexity 1 67 0 34 42 0 0 chr12 119890143 119890191 -24392298 + GC_rich Low_complexity Low_complexity 1 48 0 1504 72 31 0 chr12 119891511 119891733 -24390756 + AluSg/x SINE Alu 83 310 0 317 245 182 6 chr12 119891816 119891975 -24390514 - L2 LINE L2 -258 3055 2869 2116 105 0 7 chr12 119892027 119892333 -24390156 + AluSq SINE Alu 1 304 -9 2007 98 3 7 chr12 119892399 119892686 -24389803 + AluSx SINE Alu 7 292 -20 717 191 0 8 chr12 119892728 119892854 -24389635 + FLAM_C SINE Alu 2 126 -17 1932 195 58 24 chr12 119892929 119893391 -24389098 - L1MB7 LINE L1 -4 6180 5703 1555 137 0 72 chr12 119893403 119893546 -24388943 + AluJo SINE Alu 11 124 -188 2267 92 0 3 chr12 119893546 119893850 -24388639 + AluSx SINE Alu 1 303 -9 1555 137 0 72 chr12 119893850 119893999 -24388490 + AluJo SINE Alu 124 282 -30 498 189 0 19 chr12 119894060 119894166 -24388323 - L1MB7 LINE L1 -470 5714 5611 187 28 56 28 chr12 119894167 119894203 -24388286 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2122 93 0 17 chr12 119894263 119894398 -24388091 + AluSc SINE Alu 1 137 -172 2316 80 0 0 chr12 119894398 119894700 -24387789 + AluY SINE Alu 1 302 -9 2122 93 0 17 chr12 119894700 119894855 -24387634 + AluSc SINE Alu 137 286 -23 180 0 0 0 chr12 119894857 119894877 -24387612 + (TA)n Simple_repeat Simple_repeat 2 21 0 332 232 12 12 chr12 119894904 119894986 -24387503 + MLT1E LTR MaLR 1 82 -511 904 175 6 23 chr12 119894999 119895176 -24387313 - AluJb SINE Alu -12 300 127 1626 170 35 0 chr12 119895189 119895472 -24387017 - AluSx SINE Alu -14 298 6 2171 119 0 0 chr12 119895820 119896130 -24386359 - AluSg SINE Alu 0 310 1 2119 110 0 35 chr12 119896130 119896311 -24386178 - AluSx SINE Alu -6 306 139 2536 52 0 0 chr12 119896311 119896619 -24385870 - AluY SINE Alu -2 309 2 2119 110 0 35 chr12 119896619 119896754 -24385735 - AluSx SINE Alu -173 139 1 299 202 30 91 chr12 119898054 119898153 -24384336 - MIR SINE MIR 0 262 170 577 188 30 0 chr12 119898198 119898299 -24384190 + MER20 DNA MER1_type 29 132 -87 2664 168 226 65 chr12 119898299 119898581 -24383908 + MER21B LTR ERV1 1 236 -627 1979 132 3 3 chr12 119898581 119898892 -24383597 - AluSx SINE Alu -1 311 1 1920 83 0 104 chr12 119898894 119899220 -24383269 - AluY SINE Alu -15 296 5 2664 168 226 65 chr12 119899220 119899603 -24382886 + MER21B LTR ERV1 236 556 -307 2239 90 0 7 chr12 119899603 119899904 -24382585 - AluSx SINE Alu -13 299 1 2664 168 226 65 chr12 119899904 119899917 -24382572 + MER21B LTR ERV1 556 566 -297 2214 101 7 0 chr12 119899917 119900224 -24382265 - AluSx SINE Alu -3 309 1 2664 168 226 65 chr12 119900224 119900283 -24382206 + MER21B LTR ERV1 566 863 0 582 167 0 10 chr12 119900290 119900386 -24382103 + MER20 DNA MER1_type 125 219 0 735 269 12 6 chr12 119900387 119900558 -24381931 - MIR SINE MIR -86 176 5 2027 108 6 32 chr12 119900575 119900889 -24381600 + AluSx SINE Alu 1 306 -6 207 0 0 0 chr12 119901106 119901129 -24381360 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1978 120 7 19 chr12 119901131 119901439 -24381050 + AluSx SINE Alu 3 306 -6 1887 131 10 6 chr12 119901441 119901753 -24380736 + AluSp SINE Alu 1 313 0 1029 144 0 24 chr12 119901754 119901921 -24380568 + AluJb SINE Alu 132 294 -18 1805 124 7 46 chr12 119901923 119902063 -24380426 + AluSx SINE Alu 1 145 -167 2052 122 0 3 chr12 119902063 119902358 -24380131 + AluSg SINE Alu 1 294 -16 2093 57 3 57 chr12 119902360 119902683 -24379806 + AluY SINE Alu 1 307 0 1805 124 7 46 chr12 119902683 119902844 -24379645 + AluSx SINE Alu 146 294 -18 1657 145 0 38 chr12 119902851 119903175 -24379314 + AluY SINE Alu 5 317 0 2336 81 0 0 chr12 119903402 119903699 -24378790 + AluY SINE Alu 1 297 -14 910 126 7 0 chr12 119903785 119903920 -24378569 + AluSq/x SINE Alu 1 136 -176 2036 89 41 3 chr12 119903920 119904211 -24378278 + AluSx SINE Alu 1 302 -10 2066 99 0 10 chr12 119904774 119905068 -24377421 + AluSx SINE Alu 11 301 -11 455 259 32 132 chr12 119905209 119905272 -24377217 + MIR SINE MIR 1 69 -193 1712 140 53 13 chr12 119905272 119905572 -24376917 + AluJo SINE Alu 1 312 0 1730 150 34 3 chr12 119905573 119905867 -24376622 + AluJb SINE Alu 1 303 -9 455 259 32 132 chr12 119905867 119905878 -24376611 + MIR SINE MIR 69 79 -183 1869 136 0 29 chr12 119905878 119906194 -24376295 + AluSq SINE Alu 1 307 -6 455 259 32 132 chr12 119906194 119906367 -24376122 + MIR SINE MIR 79 226 -36 2107 103 3 3 chr12 119907702 119908003 -24374486 - AluSx SINE Alu -11 301 1 1526 130 28 8 chr12 119908126 119908373 -24374116 - AluJo SINE Alu -60 252 1 2282 90 3 3 chr12 119908534 119908846 -24373643 - AluSp SINE Alu -1 312 1 2142 107 0 22 chr12 119908876 119909195 -24373294 + AluSx SINE Alu 1 312 0 2027 114 4 0 chr12 119909840 119910147 -24372342 + AluSx SINE Alu 1 308 0 864 122 8 0 chr12 119910458 119910589 -24371900 + AluSq/x SINE Alu 1 132 -180 2174 111 3 0 chr12 119910608 119910906 -24371583 + AluSx SINE Alu 1 299 -13 1975 119 10 3 chr12 119911620 119911923 -24370566 + AluSx SINE Alu 1 305 -7 1835 121 19 54 chr12 119912056 119912370 -24370119 - AluJo SINE Alu -9 303 1 2338 77 0 16 chr12 119912410 119912721 -24369768 - AluY SINE Alu -5 306 1 21 0 0 0 chr12 119912936 119912957 -24369532 + AT_rich Low_complexity Low_complexity 1 21 0 2272 104 0 0 chr12 119915416 119915703 -24366786 - AluSq SINE Alu -21 292 6 2288 113 0 0 chr12 119915717 119916018 -24366471 - AluSg SINE Alu -9 301 1 1683 161 3 46 chr12 119916346 119916651 -24365838 + AluJo SINE Alu 1 292 -20 1620 171 49 14 chr12 119916676 119916963 -24365526 + AluJo SINE Alu 12 308 -4 638 233 30 115 chr12 119917049 119917144 -24365345 + L1ME LINE L1 5510 5612 -509 2327 105 3 0 chr12 119917144 119917449 -24365040 + AluSg SINE Alu 1 306 -4 638 233 30 115 chr12 119917449 119917629 -24364860 + L1ME LINE L1 5612 5753 -368 1549 187 13 47 chr12 119917629 119917929 -24364560 + AluJo SINE Alu 1 290 -22 638 233 30 115 chr12 119917929 119917991 -24364498 + L1ME LINE L1 5753 5819 -302 897 160 13 114 chr12 119918240 119918274 -24364215 + AluJb SINE Alu 99 135 -177 2189 95 54 0 chr12 119918274 119918570 -24363919 + AluSp SINE Alu 1 312 -1 897 160 13 114 chr12 119918570 119918668 -24363821 + AluJb SINE Alu 135 241 -71 2142 77 7 74 chr12 119918668 119918978 -24363511 + AluSc SINE Alu 1 289 -20 2246 74 0 74 chr12 119918982 119919292 -24363197 + AluSc SINE Alu 1 287 -22 2409 58 7 3 chr12 119919296 119919587 -24362902 + AluY SINE Alu 1 292 -19 897 160 13 114 chr12 119919587 119919680 -24362809 + AluJb SINE Alu 247 311 -1 1954 154 7 0 chr12 119919810 119920103 -24362386 - AluJb SINE Alu -17 295 1 2419 87 0 0 chr12 119920917 119921216 -24361273 - AluSx SINE Alu -13 299 1 885 94 79 8 chr12 119921216 119921343 -24361146 - AluSq/x SINE Alu -177 136 1 267 31 0 0 chr12 119921882 119921914 -24360575 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2045 140 3 0 chr12 119921914 119922221 -24360268 + AluSg1 SINE Alu 1 308 -1 2463 104 0 0 chr12 119922282 119922591 -24359898 - AluSg SINE Alu -1 309 1 2262 103 0 0 chr12 119922887 119923178 -24359311 - AluY SINE Alu -20 291 1 1471 162 0 102 chr12 119923249 119923375 -24359114 + AluJo SINE Alu 1 138 -164 2175 97 3 10 chr12 119923375 119923665 -24358824 - AluSc SINE Alu -21 288 1 1471 162 0 102 chr12 119923665 119923871 -24358618 + AluJo SINE Alu 138 299 -3 301 234 131 7 chr12 119923897 119924034 -24358455 + MER112 DNA MER1_type 67 220 -40 2266 117 0 0 chr12 119924973 119925271 -24357218 - AluSx SINE Alu -14 298 1 183 264 0 38 chr12 119926469 119926522 -24355967 - L2 LINE L2 -73 3240 3190 435 306 149 0 chr12 119926740 119926874 -24355615 + L2 LINE L2 3119 3272 0 303 221 115 82 chr12 119927291 119927376 -24355113 + L2 LINE L2 3147 3228 -44 1865 174 9 25 chr12 119927376 119927693 -24354796 - AluJo SINE Alu 0 312 1 303 221 115 82 chr12 119927693 119927705 -24354784 + L2 LINE L2 3228 3238 -34 2428 82 0 0 chr12 119927705 119927998 -24354491 - AluSq SINE Alu -20 293 1 303 221 115 82 chr12 119927998 119928021 -24354468 + L2 LINE L2 3238 3272 0 634 149 0 30 chr12 119928267 119928401 -24354088 - L1MB8 LINE L1 0 6178 6049 1644 186 0 14 chr12 119928402 119928682 -24353807 + AluJo SINE Alu 2 277 -35 2236 113 0 3 chr12 119928682 119928981 -24353508 - AluSq SINE Alu -14 299 1 517 92 0 119 chr12 119928989 119929044 -24353445 - L1MA2 LINE L1 0 6304 6267 2345 102 0 0 chr12 119929044 119929338 -24353151 - AluSx SINE Alu -16 296 3 517 92 0 119 chr12 119929338 119929391 -24353098 - L1MA2 LINE L1 -37 6267 6209 1016 168 0 0 chr12 119929403 119929570 -24352919 - AluJb SINE Alu -8 304 138 234 0 0 0 chr12 119929570 119929596 -24352893 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 737 154 0 0 chr12 119929596 119929713 -24352776 - AluSg/x SINE Alu -29 281 165 1299 123 80 88 chr12 119929713 119929964 -24352525 - AluSg1 SINE Alu -60 249 1 28 0 0 0 chr12 119929975 119930003 -24352486 + AT_rich Low_complexity Low_complexity 1 28 0 772 175 8 0 chr12 119930003 119930129 -24352360 - FLAM_C SINE Alu -6 127 1 1056 243 96 69 chr12 119930130 119930567 -24351922 + L2 LINE L2 2308 2732 -581 2176 118 23 3 chr12 119930567 119930873 -24351616 - AluSx SINE Alu 0 312 1 1056 243 96 69 chr12 119930873 119930886 -24351603 + L2 LINE L2 2732 2743 -570 2255 112 0 7 chr12 119930886 119931189 -24351300 - AluSx SINE Alu -11 301 1 1056 243 96 69 chr12 119931189 119931370 -24351119 + L2 LINE L2 2743 3015 -298 1968 120 3 37 chr12 119931377 119931542 -24350947 - AluSx SINE Alu -12 300 148 2294 92 3 0 chr12 119931542 119931835 -24350654 - AluY SINE Alu -17 294 1 1968 120 3 37 chr12 119931835 119931969 -24350520 - AluSx SINE Alu -164 148 11 2171 120 0 3 chr12 119931975 119932276 -24350213 - AluSx SINE Alu -10 302 3 1826 157 0 3 chr12 119932280 119932567 -24349922 - AluJb SINE Alu -8 304 19 1638 159 13 60 chr12 119932568 119932870 -24349619 - AluJb SINE Alu -18 294 7 2358 50 14 0 chr12 119932990 119933268 -24349221 - AluY SINE Alu -7 304 23 1860 209 54 48 chr12 119933318 119933429 -24349060 - MLT1D LTR MaLR -4 501 392 1452 146 68 75 chr12 119933429 119933598 -24348891 - AluJo SINE Alu -19 293 125 1879 173 0 0 chr12 119933598 119933887 -24348602 - AluJb SINE Alu -21 291 3 1452 146 68 75 chr12 119933887 119934012 -24348477 - AluJo SINE Alu -187 125 1 1860 209 54 48 chr12 119934012 119934398 -24348091 - MLT1D LTR MaLR -113 392 1 2354 94 7 0 chr12 119934610 119934908 -24347581 + AluSx SINE Alu 1 300 -12 1068 143 78 137 chr12 119935056 119935200 -24347289 - AluJo SINE Alu 0 312 161 2378 81 20 0 chr12 119935200 119935496 -24346993 - AluSq SINE Alu -10 303 2 1855 113 4 25 chr12 119935503 119935778 -24346711 - AluSx SINE Alu 0 312 44 1068 143 78 137 chr12 119935778 119935932 -24346557 - AluJo SINE Alu -157 155 24 584 265 56 41 chr12 119936322 119936518 -24345971 - MIR SINE MIR -63 199 1 2371 99 3 3 chr12 119936647 119936950 -24345539 + AluSx SINE Alu 1 303 -9 1055 164 0 0 chr12 119936950 119937109 -24345380 + AluSg/x SINE Alu 132 290 -20 571 313 5 62 chr12 119937187 119937265 -24345224 - MIR SINE MIR -43 219 138 1505 160 102 11 chr12 119937265 119937540 -24344949 - AluJo SINE Alu -12 300 1 571 313 5 62 chr12 119937540 119937685 -24344804 - MIR SINE MIR -124 138 9 2270 136 0 0 chr12 119937772 119938082 -24344407 + AluSx SINE Alu 1 310 -2 189 242 242 0 chr12 119938085 119938151 -24344338 + MIR SINE MIR 32 113 -95 412 285 32 145 chr12 119938170 119938514 -24343975 - L2 LINE L2 -56 3216 2912 2313 95 24 0 chr12 119938528 119938823 -24343666 + AluSc SINE Alu 1 302 -7 2128 122 3 0 chr12 119938983 119939277 -24343212 - AluSg SINE Alu -15 295 1 225 279 0 16 chr12 119939285 119939346 -24343143 - MIR SINE MIR -111 151 92 298 202 95 48 chr12 119939368 119939452 -24343037 - L2 LINE L2 -36 3277 3190 2307 108 0 3 chr12 119939470 119939777 -24342712 + AluSx SINE Alu 1 306 -6 791 168 132 0 chr12 119939805 119939972 -24342517 - MER53 DNA DNA 0 189 1 22 35 0 0 chr12 119940057 119940086 -24342403 + AT_rich Low_complexity Low_complexity 1 29 0 2020 162 13 0 chr12 119940086 119940394 -24342095 + AluJb SINE Alu 1 312 0 277 170 0 0 chr12 119940413 119940460 -24342029 - MER66B LTR ERV1 -142 344 298 1101 83 8 0 chr12 119940537 119940670 -24341819 + AluSc SINE Alu 1 134 -175 1928 94 69 18 chr12 119940670 119940947 -24341542 + AluSp SINE Alu 1 291 -22 441 216 78 0 chr12 119940959 119941075 -24341414 + MER112 DNA MER1_type 129 253 -7 2126 133 0 0 chr12 119941217 119941510 -24340979 + AluSx SINE Alu 1 293 -19 2151 120 13 0 chr12 119941510 119941817 -24340672 + AluSq SINE Alu 1 312 -1 1734 164 23 27 chr12 119941892 119942191 -24340298 - AluJb SINE Alu -14 298 1 2113 95 10 33 chr12 119942206 119942375 -24340114 - AluSq SINE Alu -15 298 138 2303 81 24 7 chr12 119942375 119942672 -24339817 - AluSc SINE Alu -7 302 1 2113 95 10 33 chr12 119942672 119942807 -24339682 - AluSq SINE Alu -175 138 1 542 167 0 10 chr12 119942981 119943083 -24339406 + FLAM_A SINE Alu 42 142 0 1789 195 13 0 chr12 119943364 119943667 -24338822 + AluJb SINE Alu 1 307 -5 1352 212 32 11 chr12 119943897 119944210 -24338279 + AluJb SINE Alu 1 319 0 2006 110 4 0 chr12 119944366 119944630 -24337859 + AluSx SINE Alu 40 304 -8 2436 80 10 13 chr12 119944696 119945008 -24337481 + AluY SINE Alu 1 311 0 2111 114 0 0 chr12 119945021 119945292 -24337197 + AluSx SINE Alu 3 273 -39 1657 167 3 46 chr12 119945337 119945476 -24337013 + AluJb SINE Alu 1 144 -168 1901 157 0 0 chr12 119945476 119945750 -24336739 + AluSx SINE Alu 1 274 -38 1657 167 3 46 chr12 119945750 119945915 -24336574 + AluJb SINE Alu 144 292 -20 2074 133 3 13 chr12 119945915 119946215 -24336274 + AluSx SINE Alu 1 297 -15 2219 109 7 0 chr12 119946393 119946686 -24335803 + AluSc SINE Alu 1 295 -14 952 172 73 26 chr12 119946688 119946880 -24335609 + MER1B DNA MER1_type 44 244 -95 514 117 0 13 chr12 119946881 119946958 -24335531 - AluY SINE Alu -18 293 218 2112 121 31 7 chr12 119947094 119947384 -24335105 - AluSx SINE Alu -15 297 1 2171 81 9 81 chr12 119947456 119947776 -24334713 - AluSq SINE Alu -16 297 1 2018 113 0 0 chr12 119948565 119948830 -24333659 + AluSq SINE Alu 42 306 -7 1767 147 0 96 chr12 119948887 119949051 -24333438 + AluJo SINE Alu 1 118 -184 185 0 0 39 chr12 119949051 119949077 -24333412 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1767 147 0 96 chr12 119949077 119949246 -24333243 + AluJo SINE Alu 118 302 0 23 24 0 24 chr12 119949498 119949520 -24332969 + AT_rich Low_complexity Low_complexity 1 23 -17 793 174 8 0 chr12 119949520 119949652 -24332837 + FLAM_C SINE Alu 1 133 0 23 24 0 24 chr12 119949652 119949670 -24332819 + AT_rich Low_complexity Low_complexity 23 40 0 23 33 0 0 chr12 119949961 119949991 -24332498 + AT_rich Low_complexity Low_complexity 1 30 0 2314 98 0 3 chr12 119950135 119950430 -24332059 - AluSc SINE Alu -15 294 1 2316 109 3 0 chr12 119950430 119950731 -24331758 - AluSp SINE Alu -10 303 1 1567 142 0 0 chr12 119950866 119951085 -24331404 - AluSg/x SINE Alu -13 299 81 272 122 0 0 chr12 119951085 119951126 -24331363 - Alu SINE Alu -266 42 2 2385 89 3 0 chr12 119951422 119951713 -24330776 + AluSp SINE Alu 1 292 -21 411 189 0 14 chr12 119951993 119952067 -24330422 + AluJ/FLAM SINE Alu 2 74 -238 2127 139 3 0 chr12 119952318 119952620 -24329869 + AluSx SINE Alu 1 303 -9 520 306 0 6 chr12 119953004 119953161 -24329328 + MIR3 SINE MIR 50 205 -3 1890 151 0 20 chr12 119953201 119953493 -24328996 + AluJo SINE Alu 12 297 -15 286 330 11 0 chr12 119953759 119953847 -24328642 - L2 LINE L2 -32 3281 3193 998 171 0 12 chr12 119954983 119955153 -24327336 - AluJb SINE Alu -8 304 137 195 42 0 0 chr12 119955253 119955277 -24327212 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 511 245 38 0 chr12 119955287 119955393 -24327096 - L2 LINE L2 -23 3290 3181 477 189 20 153 chr12 119955585 119955781 -24326708 - L2 LINE L2 0 3313 3144 2302 100 0 7 chr12 119956565 119956875 -24325614 + AluSg1 SINE Alu 2 309 0 2169 102 0 0 chr12 119957097 119957371 -24325118 + AluSg SINE Alu 6 279 -31 2526 71 10 7 chr12 119957808 119958118 -24324371 - AluY SINE Alu 0 311 1 1869 148 3 26 chr12 119958893 119959057 -24323432 - AluSx SINE Alu -14 298 132 2251 76 3 23 chr12 119959057 119959384 -24323105 - AluY SINE Alu 0 311 1 2167 106 7 0 chr12 119959386 119959679 -24322810 - AluSx SINE Alu -17 295 1 1869 148 3 26 chr12 119959679 119959816 -24322673 - AluSx SINE Alu -181 131 1 229 191 180 67 chr12 119960073 119960162 -24322327 - MIR3 SINE MIR -27 181 83 2472 65 7 3 chr12 119960341 119960647 -24321842 + AluY SINE Alu 1 307 -4 1391 159 9 0 chr12 119960862 119961076 -24321413 + AluJb SINE Alu 75 290 -22 2152 139 0 0 chr12 119961076 119961371 -24321118 + AluSq SINE Alu 1 295 -18 242 208 19 0 chr12 119961425 119961478 -24321011 + MLT1H LTR MaLR 245 298 -251 1451 114 10 0 chr12 119961606 119961799 -24320690 - AluSp SINE Alu -17 296 102 1126 75 0 0 chr12 119961831 119961964 -24320525 - AluSp SINE Alu -180 133 1 342 179 32 63 chr12 119961965 119962060 -24320429 + MLT1H LTR MaLR 458 549 0 2338 58 6 35 chr12 119962481 119962792 -24319697 + AluY SINE Alu 1 302 -9 1671 163 22 56 chr12 119962824 119963143 -24319346 + AluJb SINE Alu 1 308 -4 2279 86 0 0 chr12 119963512 119963824 -24318665 + AluSg SINE Alu 2 313 0 1419 138 22 4 chr12 119964085 119964310 -24318179 + AluSg/x SINE Alu 70 298 -12 2275 92 17 0 chr12 119965270 119965564 -24316925 + AluSp SINE Alu 1 299 -14 699 128 10 0 chr12 119965701 119965803 -24316686 - AluSp SINE Alu -210 103 1 624 161 67 7 chr12 119965803 119965943 -24316546 + MLT1B LTR MaLR 81 225 -165 * 767 181 169 115 chr12 119965940 119966122 -24316367 - MLT1H LTR MaLR -191 358 187 2134 111 30 0 chr12 119966122 119966420 -24316069 + AluSx SINE Alu 2 298 -14 767 181 169 115 chr12 119966420 119966575 -24315914 - MLT1H LTR MaLR -362 187 3 315 186 150 35 chr12 119966579 119966692 -24315797 + L2 LINE L2 3043 3168 -145 1105 164 0 5 chr12 119966807 119966996 -24315493 + AluSg/x SINE Alu 120 307 -3 1958 142 0 0 chr12 119967138 119967434 -24315055 + AluSx SINE Alu 2 297 -15 577 211 0 0 chr12 119967446 119967550 -24314939 + AluJ SINE Alu 2 105 -207 1570 151 11 4 chr12 119967551 119967816 -24314673 - AluJb SINE Alu -7 305 39 476 133 13 0 chr12 119967816 119967891 -24314598 - AluJ/FLAM SINE Alu -235 77 2 933 188 6 6 chr12 119967903 119968084 -24314405 + AluJ SINE Alu 112 292 -20 1164 189 57 4 chr12 119968232 119968460 -24314029 - L1MB7 LINE L1 -21 6163 5924 2336 87 3 0 chr12 119969092 119969404 -24313085 + AluSp SINE Alu 1 313 0 23 0 0 0 chr12 119969485 119969508 -24312981 + AT_rich Low_complexity Low_complexity 1 23 0 1848 140 3 3 chr12 119970119 119970411 -24312078 - AluSx SINE Alu -20 292 1 1574 134 0 0 chr12 119970909 119971155 -24311334 + AluJb SINE Alu 63 308 -4 394 291 48 0 chr12 119971341 119971444 -24311045 - L2 LINE L2 -14 3258 3151 800 179 0 0 chr12 119971923 119972046 -24310443 - FLAM_C SINE Alu -10 123 1 793 242 114 14 chr12 119972161 119972289 -24310200 + MIR SINE MIR 15 129 -133 1842 153 0 7 chr12 119972289 119972584 -24309905 - AluSx SINE Alu -19 293 1 793 242 114 14 chr12 119972584 119972674 -24309815 + MIR SINE MIR 129 255 -7 664 284 27 24 chr12 119973262 119973506 -24308983 + MIR SINE MIR 16 261 -1 2225 94 13 0 chr12 119973839 119974146 -24308343 + AluSp SINE Alu 1 311 -2 2229 103 0 0 chr12 119974245 119974546 -24307943 + AluSg SINE Alu 1 301 -9 634 105 0 11 chr12 119974555 119974650 -24307839 - AluSg/x SINE Alu -10 300 207 703 164 62 23 chr12 119974705 119974833 -24307656 + FLAM_C SINE Alu 1 133 0 2354 78 0 7 chr12 119975462 119975768 -24306721 + AluY SINE Alu 1 304 -7 1840 68 8 0 chr12 119975885 119976121 -24306368 - AluSg SINE Alu -71 239 2 1909 134 26 10 chr12 119976284 119976590 -24305899 + AluSx SINE Alu 2 312 0 2179 93 3 3 chr12 119976956 119977257 -24305232 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr12 119977452 119977473 -24305016 + AT_rich Low_complexity Low_complexity 1 21 0 1805 108 87 14 chr12 119978108 119978396 -24304093 + AluSc SINE Alu 1 309 0 1835 146 17 0 chr12 119978498 119978786 -24303703 + AluSq SINE Alu 1 293 -20 2180 104 0 3 chr12 119979411 119979710 -24302779 - AluSx SINE Alu -14 298 1 510 232 0 18 chr12 119980020 119980132 -24302357 + L2 LINE L2 3161 3270 -2 308 285 97 81 chr12 119980255 119980532 -24301957 + L2 LINE L2 3008 3292 -21 2272 92 0 0 chr12 119980532 119980837 -24301652 - AluSq SINE Alu -8 305 1 308 285 97 81 chr12 119980837 119980857 -24301632 + L2 LINE L2 3292 3310 -3 637 272 63 29 chr12 119980930 119981169 -24301320 + MIR SINE MIR 12 258 -4 195 369 0 0 chr12 119981253 119981318 -24301171 - L2 LINE L2 -87 3185 3121 23 0 0 0 chr12 119981673 119981696 -24300793 + GC_rich Low_complexity Low_complexity 1 23 0 250 226 53 0 chr12 119982207 119982283 -24300206 - MIR SINE MIR -63 145 62 2068 94 14 3 chr12 119982305 119982602 -24299887 + AluSq SINE Alu 1 300 -13 290 267 139 12 chr12 119982666 119982752 -24299737 - L2 LINE L2 -6 3266 3170 985 135 26 79 chr12 119983173 119983402 -24299087 - MER20 DNA MER1_type 0 219 3 768 308 36 5 chr12 119983510 119983731 -24298758 - MIR SINE MIR -31 231 4 2032 108 14 3 chr12 119983736 119984033 -24298456 - AluSg SINE Alu -10 300 1 720 220 8 0 chr12 119984233 119984357 -24298132 + MER2 DNA MER2_type 13 137 -208 270 52 0 207 chr12 119984357 119984393 -24298096 - MER75 DNA T2_type 0 504 483 2135 91 10 10 chr12 119984393 119984700 -24297789 + AluSx SINE Alu 6 312 0 270 52 0 207 chr12 119984700 119984721 -24297768 - MER75 DNA T2_type -21 483 459 2048 112 0 0 chr12 119984779 119985064 -24297425 + AluSc SINE Alu 1 285 -24 210 158 13 26 chr12 119985064 119985140 -24297349 + (TA)n Simple_repeat Simple_repeat 2 76 0 235 143 0 71 chr12 119985142 119985198 -24297291 + MER2 DNA MER2_type 159 210 -135 1789 143 0 38 chr12 119985226 119985541 -24296948 - AluSx SINE Alu -5 307 5 2381 73 0 0 chr12 119985581 119985883 -24296606 - AluY SINE Alu -9 302 1 370 215 15 0 chr12 119985890 119985955 -24296534 + MER2 DNA MER2_type 279 344 -1 1837 105 102 24 chr12 119986020 119986353 -24296136 - MER46B DNA MER2_type -1 235 2 2058 121 14 0 chr12 119986371 119986668 -24295821 + AluSx SINE Alu 1 301 -11 357 127 0 0 chr12 119986669 119986724 -24295765 - MER46B DNA MER2_type -302 59 5 252 273 15 0 chr12 119987018 119987084 -24295405 + (TATG)n Simple_repeat Simple_repeat 2 68 0 253 308 225 32 chr12 119987276 119987463 -24295026 - L2 LINE L2 -226 3046 2896 1890 133 3 7 chr12 119987463 119987764 -24294725 - AluSx SINE Alu -11 301 2 253 308 225 32 chr12 119987764 119987837 -24294652 - L2 LINE L2 -376 2896 2838 2252 84 3 0 chr12 119987837 119988136 -24294353 - AluSp SINE Alu -13 300 1 253 308 225 32 chr12 119988136 119988480 -24294009 - L2 LINE L2 -434 2838 2301 387 273 77 46 chr12 119988893 119989087 -24293402 + MIR SINE MIR 54 253 -9 1700 177 3 0 chr12 119989125 119989425 -24293064 + AluJb SINE Alu 1 301 -11 785 281 44 27 chr12 119989640 119989935 -24292554 - MLT1J LTR MaLR -2 509 210 310 188 0 88 chr12 119990307 119990387 -24292102 + AluJ/FRAM SINE Alu 220 292 -10 264 297 163 44 chr12 119990421 119990626 -24291863 + L2 LINE L2 2508 2687 -585 1652 169 0 7 chr12 119990626 119990922 -24291567 + AluJb SINE Alu 15 308 -4 264 297 163 44 chr12 119990922 119991156 -24291333 + L2 LINE L2 2687 3008 -264 1810 159 0 0 chr12 119991600 119991895 -24290594 + AluSx SINE Alu 1 295 -17 1569 177 32 0 chr12 119991934 119992216 -24290273 - AluJo SINE Alu -16 296 6 1450 193 10 21 chr12 119992219 119992509 -24289980 + MER58B DNA MER1_type 39 325 -16 23 33 0 0 chr12 119992586 119992616 -24289873 + AT_rich Low_complexity Low_complexity 1 30 0 2264 88 0 0 chr12 119992668 119992964 -24289525 + AluY SINE Alu 1 296 -15 1021 146 0 0 chr12 119992966 119993124 -24289365 + AluSg/x SINE Alu 140 297 -15 1542 142 0 0 chr12 119993217 119993449 -24289040 - AluSg/x SINE Alu 0 312 81 2134 104 3 3 chr12 119993453 119993752 -24288737 - AluY SINE Alu -12 299 1 1905 144 0 10 chr12 119993868 119994166 -24288323 - AluSx SINE Alu -17 295 1 442 129 79 79 chr12 119994166 119994267 -24288222 - FLAM_A SINE Alu -8 134 34 24 0 0 0 chr12 119994273 119994297 -24288192 + AT_rich Low_complexity Low_complexity 1 24 0 2139 99 7 0 chr12 119994352 119994644 -24287845 - AluSp SINE Alu -19 294 1 280 191 24 0 chr12 119994649 119994742 -24287747 - L1 LINE L1 -890 5256 5163 1552 193 3 19 chr12 119994742 119995053 -24287436 - AluJb SINE Alu -6 306 1 346 320 32 19 chr12 119995055 119995211 -24287278 - L1 LINE L1 -1093 5053 4896 933 187 58 71 chr12 119995471 119995510 -24286979 - MER58A DNA MER1_type -2198 222 184 1669 176 10 3 chr12 119995510 119995805 -24286684 + AluJo SINE Alu 5 301 -11 933 187 58 71 chr12 119995805 119995942 -24286547 - MER58A DNA MER1_type -2236 184 47 786 163 8 0 chr12 119995942 119996065 -24286424 + FLAM_A SINE Alu 1 124 -9 933 187 58 71 chr12 119996065 119996112 -24286377 - MER58A DNA MER1_type -2373 47 1 869 310 35 0 chr12 119996126 119996439 -24286050 - L1ME LINE L1 -303 5818 5495 244 178 86 145 chr12 119996524 119996592 -24285897 + L1ME4a LINE L1 5978 6048 -73 189 0 0 0 chr12 119996592 119996613 -24285876 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 1784 166 3 13 chr12 119996614 119996927 -24285562 - AluJo SINE Alu -2 310 1 244 178 86 145 chr12 119996927 119997008 -24285481 + L1ME4a LINE L1 6047 6120 -1 1701 164 0 30 chr12 119997242 119997547 -24284942 + AluSx SINE Alu 1 296 -16 2070 110 10 3 chr12 119998317 119998616 -24283873 + AluSq SINE Alu 1 301 -12 1619 179 38 3 chr12 119998680 119998971 -24283518 + AluJo SINE Alu 1 301 -11 645 276 65 18 chr12 119998995 119999165 -24283324 - MER21B LTR ERV1 -360 503 326 261 227 182 11 chr12 119999229 119999317 -24283172 - MIR SINE MIR 0 262 160 313 134 146 37 chr12 119999324 119999336 -24283153 - L1MC4 LINE L1 -1337 6705 6696 767 106 8 53 chr12 119999336 119999424 -24283065 + L1MB3 LINE L1 6051 6133 -50 2137 108 0 19 chr12 119999424 119999731 -24282758 + AluSx SINE Alu 1 301 -11 767 106 8 53 chr12 119999731 119999774 -24282715 + L1MB3 LINE L1 6133 6176 -7 313 134 146 37 chr12 119999774 119999818 -24282671 - L1MC4 LINE L1 -1346 6696 6658 1826 151 3 35 chr12 119999818 120000003 -24282486 + L1MB8 LINE L1 5852 6023 -155 2369 69 0 3 chr12 120000003 120000308 -24282181 - AluSc SINE Alu -5 304 1 1826 151 3 35 chr12 120000308 120000460 -24282029 + L1MB8 LINE L1 6023 6178 0 313 134 146 37 chr12 120000460 120000484 -24282005 - L1MC4 LINE L1 -1384 6658 6615 2313 90 0 0 chr12 120000545 120000855 -24281634 - AluY SINE Alu -1 310 1 1387 177 26 15 chr12 120001126 120001391 -24281098 - AluJo SINE Alu -44 268 1 2201 117 0 3 chr12 120002310 120002619 -24279870 - AluSx SINE Alu -4 308 1 189 0 0 0 chr12 120002631 120002652 -24279837 + (TA)n Simple_repeat Simple_repeat 1 21 0 1892 138 7 13 chr12 120002652 120002946 -24279543 - AluSx SINE Alu -18 294 1 1760 149 3 23 chr12 120002963 120003264 -24279225 - AluSx SINE Alu -17 295 1 386 285 76 19 chr12 120003677 120003835 -24278654 - MER5B DNA MER1_type -4 174 8 276 236 0 110 chr12 120005032 120005159 -24277330 - MIR SINE MIR -66 196 84 1943 152 7 0 chr12 120005947 120006256 -24276233 - AluJo SINE Alu -1 311 1 1674 130 49 7 chr12 120006366 120006651 -24275838 - AluSx SINE Alu -15 297 1 555 248 25 8 chr12 120006656 120006777 -24275712 - FLAM_A SINE Alu -10 123 1 4291 90 3 39 chr12 120006957 120007066 -24275423 + LTR10C LTR ERV1 1 112 -479 2178 90 0 29 chr12 120007066 120007377 -24275112 - AluY SINE Alu -9 302 1 4291 90 3 39 chr12 120007377 120007391 -24275098 + LTR10C LTR ERV1 112 125 -466 2077 90 42 0 chr12 120007391 120007680 -24274809 - AluY SINE Alu -10 301 1 4291 90 3 39 chr12 120007680 120008168 -24274321 + LTR10C LTR ERV1 125 591 0 2155 111 0 0 chr12 120008902 120009199 -24273290 + AluSg SINE Alu 4 300 -10 2039 143 0 0 chr12 120009215 120009522 -24272967 + AluSx SINE Alu 5 311 -1 1979 120 13 20 chr12 120009523 120009824 -24272665 + AluSx SINE Alu 1 299 -13 2092 124 0 3 chr12 120009831 120010130 -24272359 + AluSx SINE Alu 2 299 -13 2056 125 10 0 chr12 120010251 120010555 -24271934 + AluSx SINE Alu 1 307 -5 198 0 0 0 chr12 120010570 120010592 -24271897 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 2096 96 14 10 chr12 120010592 120010880 -24271609 - AluSq SINE Alu -24 289 1 1243 235 7 24 chr12 120011952 120012241 -24270248 + AluJo SINE Alu 1 284 -18 473 273 22 86 chr12 120012256 120012445 -24270044 + L1ME LINE L1 5543 5712 -409 1612 166 14 7 chr12 120012445 120012740 -24269749 + AluJb SINE Alu 1 297 -15 473 273 22 86 chr12 120012740 120012817 -24269672 + L1ME LINE L1 5712 5792 -329 434 262 35 14 chr12 120012835 120012976 -24269513 - MIR SINE MIR 0 262 119 1379 158 43 12 chr12 120012983 120013236 -24269253 + AluJb SINE Alu 43 303 -9 248 336 19 39 chr12 120013236 120013340 -24269149 - MIR SINE MIR -155 107 6 1430 169 75 11 chr12 120013439 120013718 -24268771 - AluJo SINE Alu -15 297 1 566 244 76 76 chr12 120013718 120013906 -24268583 - L1MEc LINE L1 -2642 3573 3386 2013 143 3 0 chr12 120013906 120014213 -24268276 - AluSx SINE Alu 0 312 5 566 244 76 76 chr12 120014213 120014340 -24268149 - L1MEc LINE L1 -2829 3386 3255 2117 114 3 3 chr12 120014340 120014647 -24267842 - AluSx SINE Alu -5 307 1 566 244 76 76 chr12 120014647 120014658 -24267831 - L1MEc LINE L1 -2959 3256 3246 1910 133 0 49 chr12 120014691 120015015 -24267474 + AluSx SINE Alu 1 308 -4 2119 245 34 45 chr12 120015015 120015124 -24267365 - L1MEc LINE L1 -3271 2944 2835 1936 135 0 3 chr12 120015124 120015420 -24267069 - AluSc SINE Alu -14 295 1 1790 154 0 16 chr12 120015420 120015588 -24266901 - AluSq SINE Alu -12 301 139 2323 88 0 0 chr12 120015588 120015895 -24266594 - AluY SINE Alu -4 307 1 1790 154 0 16 chr12 120015895 120016032 -24266457 - AluSq SINE Alu -174 139 1 2119 245 34 45 chr12 120016032 120016622 -24265867 - L1MEc LINE L1 -3379 2836 2241 250 42 42 21 chr12 120016622 120016670 -24265819 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 1989 139 4 0 chr12 120016670 120016951 -24265538 - AluSx SINE Alu -1 329 1 2119 245 34 45 chr12 120016951 120017117 -24265372 - L1MEc LINE L1 -3972 2243 2119 2139 133 0 0 chr12 120017154 120017474 -24265015 + AluSx SINE Alu 1 288 -24 249 119 0 0 chr12 120017906 120017948 -24264541 - AluSx SINE Alu -3 298 257 1920 141 0 11 chr12 120017948 120018232 -24264257 - AluSx SINE Alu -31 281 1 311 0 26 0 chr12 120018238 120018277 -24264212 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6622 60 17 47 chr12 120018277 120019237 -24263252 - SVA Other Other -23 1363 433 5477 87 61 41 chr12 120019250 120020721 -24261768 - SVA Other Other -518 868 2 259 125 16 16 chr12 120020730 120020794 -24261695 + GA-rich Low_complexity Low_complexity 3 66 0 300 227 72 120 chr12 120020850 120021094 -24261395 - L1MC4 LINE L1 0 8042 7788 1831 150 0 21 chr12 120021094 120021381 -24261108 + AluJb SINE Alu 1 281 -31 300 227 72 120 chr12 120021381 120021393 -24261096 - L1MC4 LINE L1 -254 7788 7777 2286 126 3 0 chr12 120021393 120021702 -24260787 - AluSx SINE Alu -2 310 1 300 227 72 120 chr12 120021702 120021818 -24260671 - L1MC4 LINE L1 -265 7777 7687 1778 144 0 0 chr12 120021881 120022145 -24260344 + AluSx SINE Alu 42 305 0 342 290 101 36 chr12 120022381 120022448 -24260041 - MIR SINE MIR -68 194 133 2189 114 0 7 chr12 120022448 120022738 -24259751 + AluSc SINE Alu 1 288 -21 342 290 101 36 chr12 120022738 120022808 -24259681 - MIR SINE MIR -129 133 48 2260 119 0 0 chr12 120022814 120023109 -24259380 + AluSx SINE Alu 3 297 -15 2490 56 0 0 chr12 120023111 120023433 -24259056 + AluY SINE Alu 1 322 0 264 200 0 0 chr12 120023573 120023628 -24258861 + (TG)n Simple_repeat Simple_repeat 1 55 0 718 165 0 8 chr12 120024418 120024539 -24257950 - FLAM_A SINE Alu -12 121 2 1901 153 30 0 chr12 120024554 120024849 -24257640 - AluJb SINE Alu -8 304 1 815 203 135 19 chr12 120024856 120025063 -24257426 - MIR SINE MIR -21 241 11 326 256 25 91 chr12 120025065 120025114 -24257375 - LTR67 LTR ERVL -52 505 454 2132 105 25 3 chr12 120025114 120025400 -24257089 - AluSq SINE Alu -21 292 1 326 256 25 91 chr12 120025400 120025471 -24257018 - LTR67 LTR ERVL -103 454 393 284 257 27 0 chr12 120025483 120025557 -24256932 - LTR67 LTR ERVL -446 111 36 879 201 33 9 chr12 120025963 120026177 -24256312 - MER20 DNA MER1_type 0 219 1 320 143 107 0 chr12 120026194 120026250 -24256239 + 5S rRNA rRNA 1 62 -59 1824 135 0 115 chr12 120026619 120026959 -24255530 - AluSx SINE Alu -11 301 1 225 208 21 0 chr12 120027621 120027669 -24254820 + L1ME2 LINE L1 5539 5587 -575 2217 119 7 0 chr12 120027669 120027971 -24254518 + AluSx SINE Alu 1 304 -8 311 341 112 6 chr12 120028106 120028285 -24254204 + L1ME2 LINE L1 5766 5963 -201 276 307 58 22 chr12 120028524 120028661 -24253828 - LTR33 LTR ERVL -13 508 367 768 232 191 125 chr12 120028692 120028963 -24253526 - MLT1G LTR MaLR -13 582 330 1647 150 48 48 chr12 120028963 120029256 -24253233 - AluJo SINE Alu -19 293 1 768 232 191 125 chr12 120029256 120029492 -24252997 - MLT1G LTR MaLR -265 330 1 486 238 138 22 chr12 120029543 120029724 -24252765 - LTR33 LTR ERVL -305 216 15 2302 101 7 0 chr12 120030214 120030510 -24251979 + AluSg SINE Alu 1 298 -12 415 281 75 75 chr12 120030511 120030810 -24251679 - L1ME4a LINE L1 -26 6095 5794 2539 60 0 3 chr12 120030810 120031108 -24251381 + AluY SINE Alu 1 297 -14 415 281 75 75 chr12 120031108 120031275 -24251214 - L1ME4a LINE L1 -326 5795 5629 2526 68 0 0 chr12 120031328 120031623 -24250866 - AluY SINE Alu -16 295 1 315 85 0 0 chr12 120031677 120031724 -24250765 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2256 108 0 3 chr12 120031752 120032049 -24250440 - AluSx SINE Alu -16 296 1 2383 104 0 13 chr12 120032051 120032359 -24250130 - AluSx SINE Alu -8 304 1 2115 139 0 13 chr12 120033045 120033355 -24249134 - AluSx SINE Alu -6 306 1 252 0 0 0 chr12 120033710 120033738 -24248751 + (TG)n Simple_repeat Simple_repeat 2 29 0 1983 136 0 14 chr12 120033738 120034025 -24248464 - AluSx SINE Alu -29 283 1 363 218 11 23 chr12 120034029 120034116 -24248373 - L1MC5 LINE L1 -1095 6866 6781 1721 101 0 0 chr12 120034116 120034334 -24248155 + AluSq SINE Alu 85 302 -11 2164 233 58 104 chr12 120034334 120034453 -24248036 + L1MC5 LINE L1 6859 6982 -979 2031 135 0 22 chr12 120034453 120034765 -24247724 + AluSx SINE Alu 1 305 -7 2164 233 58 104 chr12 120034765 120035343 -24247146 + L1MC5 LINE L1 6982 7489 -472 2190 106 10 3 chr12 120035343 120035636 -24246853 + AluSq SINE Alu 1 295 -18 2164 233 58 104 chr12 120035636 120036046 -24246443 + L1MC5 LINE L1 7489 7916 -45 2217 112 10 0 chr12 120036050 120036346 -24246143 + AluSx SINE Alu 1 299 -13 2262 84 0 78 chr12 120036346 120036681 -24245808 + AluSc SINE Alu 1 309 0 256 179 60 60 chr12 120036876 120036960 -24245529 - L2 LINE L2 -2 3311 3228 183 343 133 0 chr12 120038222 120038327 -24244162 + L2 LINE L2 3144 3262 -10 742 178 0 22 chr12 120038447 120038582 -24243907 + AluJo/FLAM SINE Alu 2 133 -169 2118 127 10 0 chr12 120038584 120038875 -24243614 - AluSq SINE Alu -19 294 1 531 297 57 14 chr12 120039025 120039237 -24243252 + L1ME1 LINE L1 5831 6051 -115 291 68 0 0 chr12 120039238 120039282 -24243207 - AluSx SINE Alu -3 305 262 1737 99 9 0 chr12 120039282 120039503 -24242986 - AluSx SINE Alu -89 223 1 255 302 47 0 chr12 120039503 120039589 -24242900 + L1ME1 LINE L1 6042 6131 -35 2280 109 6 6 chr12 120039605 120039916 -24242573 - AluSx SINE Alu -1 311 1 380 306 143 5 chr12 120040208 120040417 -24242072 + MIR SINE MIR 13 250 -12 1804 87 0 0 chr12 120041477 120041695 -24240794 - AluSg SINE Alu -82 228 11 1205 129 6 0 chr12 120041704 120041874 -24240615 - FRAM SINE Alu -6 170 1 2279 116 0 0 chr12 120042260 120042552 -24239937 - AluSx SINE Alu -16 296 5 1656 164 14 14 chr12 120042586 120042867 -24239622 + AluJb SINE Alu 1 281 -31 272 304 59 37 chr12 120043728 120043863 -24238626 - MIR SINE MIR -115 147 10 1507 151 0 110 chr12 120045515 120045646 -24236843 + AluJo SINE Alu 3 147 -155 2502 75 0 0 chr12 120045646 120045940 -24236549 - AluSc SINE Alu -14 295 2 1507 151 0 110 chr12 120045940 120045955 -24236534 + AluJo SINE Alu 147 162 -140 2334 69 0 87 chr12 120045955 120046288 -24236201 - AluY SINE Alu -7 304 1 1507 151 0 110 chr12 120046288 120046477 -24236012 + AluJo SINE Alu 162 302 0 347 240 70 97 chr12 120046978 120047199 -24235290 + HAL1b LINE L1 1202 1428 80 1576 193 33 36 chr12 120047199 120047317 -24235172 + AluJb SINE Alu 1 118 -194 2287 124 0 6 chr12 120047317 120047631 -24234858 + AluSx SINE Alu 1 312 0 1576 193 33 36 chr12 120047631 120047645 -24234844 + AluJb SINE Alu 118 131 -181 2523 77 3 0 chr12 120047645 120047944 -24234545 + AluSp SINE Alu 1 300 -13 1576 193 33 36 chr12 120047944 120048116 -24234373 + AluJb SINE Alu 131 305 -7 347 240 70 97 chr12 120048116 120048147 -24234342 + HAL1b LINE L1 1428 1458 110 267 31 0 0 chr12 120048147 120048179 -24234310 + (TTG)n Simple_repeat Simple_repeat 2 33 0 347 240 70 97 chr12 120048179 120048190 -24234299 + HAL1b LINE L1 1458 1137 -211 2269 96 0 17 chr12 120048190 120048491 -24233998 + AluSq SINE Alu 1 296 -17 347 240 70 97 chr12 120048491 120048691 -24233798 + HAL1b LINE L1 1136 1340 -8 222 200 0 0 chr12 120048710 120048730 -24233759 + A-rich Low_complexity Low_complexity 1 20 -30 1962 186 0 0 chr12 120048730 120049042 -24233447 + AluJb SINE Alu 1 312 0 222 200 0 0 chr12 120049042 120049071 -24233418 + A-rich Low_complexity Low_complexity 19 50 0 427 143 26 0 chr12 120050187 120050264 -24232225 - AluJb SINE Alu -1 301 223 639 119 10 0 chr12 120050266 120050367 -24232122 - AluJb SINE Alu -124 188 87 2177 119 0 22 chr12 120050955 120051274 -24231215 - AluSx SINE Alu 0 312 1 1106 204 0 49 chr12 120051276 120051502 -24230987 - AluJb SINE Alu -18 294 80 483 267 21 63 chr12 120051733 120051924 -24230565 - MIR SINE MIR -60 202 20 183 326 31 39 chr12 120054004 120054133 -24228356 - L2 LINE L2 -2 3311 3184 349 266 18 131 chr12 120054815 120054835 -24227654 + MIR SINE MIR 6 27 -235 1219 163 117 123 chr12 120054835 120054875 -24227614 - MER67A LTR ERV1 0 543 504 2230 135 0 0 chr12 120054875 120055172 -24227317 - AluSx SINE Alu -14 298 2 1219 163 117 123 chr12 120055172 120055677 -24226812 - MER67A LTR ERV1 -39 504 1 349 266 18 131 chr12 120055677 120055797 -24226692 + MIR SINE MIR 27 159 -103 180 0 0 0 chr12 120055797 120055817 -24226672 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 808 142 0 8 chr12 120055819 120055946 -24226543 - FLAM_C SINE Alu -7 126 1 349 266 18 131 chr12 120055946 120056023 -24226466 + MIR SINE MIR 160 202 -60 180 228 123 0 chr12 120056249 120056306 -24226183 - MER5A DNA MER1_type -119 70 7 411 299 124 16 chr12 120056393 120056438 -24226051 - MIR SINE MIR -16 246 207 2085 128 20 0 chr12 120056438 120056735 -24225754 - AluSx SINE Alu -9 303 1 411 299 124 16 chr12 120056735 120056889 -24225600 - MIR SINE MIR -55 207 42 366 23 0 0 chr12 120057160 120057203 -24225286 + (TG)n Simple_repeat Simple_repeat 2 44 0 2221 101 17 0 chr12 120057288 120057586 -24224903 - AluSp SINE Alu -10 303 1 2254 133 0 3 chr12 120058184 120058492 -24223997 + AluSx SINE Alu 1 307 -5 932 147 0 0 chr12 120059134 120059270 -24223219 + FLAM_C SINE Alu 2 137 -6 2232 117 16 35 chr12 120059282 120059347 -24223142 - THE1B LTR MaLR -4 360 295 2314 102 7 3 chr12 120059347 120059651 -24222838 + AluSx SINE Alu 1 305 -7 2232 117 16 35 chr12 120059651 120059952 -24222537 - THE1B LTR MaLR -69 295 1 872 200 12 6 chr12 120059952 120060117 -24222372 + FRAM SINE Alu 1 166 0 282 257 40 30 chr12 120060119 120060220 -24222269 + L1MC4a LINE L1 4744 4845 -1301 936 283 71 54 chr12 120060236 120060668 -24221821 + L1MC4a LINE L1 5212 5635 -529 1883 125 36 36 chr12 120060668 120060851 -24221638 - AluSx SINE Alu -2 310 125 495 0 0 0 chr12 120060851 120060906 -24221583 + (TG)n Simple_repeat Simple_repeat 2 56 0 1883 125 36 36 chr12 120060906 120061027 -24221462 - AluSx SINE Alu -186 126 6 936 283 71 54 chr12 120061027 120061256 -24221233 + L1MC4a LINE L1 5635 5566 -598 2071 114 36 0 chr12 120061256 120061537 -24220952 + AluSq SINE Alu 3 293 -20 441 242 178 35 chr12 120061623 120061854 -24220635 + MLT1J1 LTR MaLR 18 281 -165 2618 56 0 0 chr12 120061857 120062163 -24220326 + AluY SINE Alu 2 307 -4 187 253 105 21 chr12 120062239 120062334 -24220155 + L2 LINE L2 2851 2953 -319 25 0 0 0 chr12 120062725 120062750 -24219739 + GC_rich Low_complexity Low_complexity 1 25 0 608 222 58 18 chr12 120063871 120064042 -24218447 - MIR SINE MIR -29 233 56 794 118 0 8 chr12 120064424 120064543 -24217946 + FLAM_C SINE Alu 1 118 -15 1755 143 18 31 chr12 120064570 120064856 -24217633 + AluJo SINE Alu 6 287 -25 737 233 13 0 chr12 120065149 120065308 -24217181 + FRAM SINE Alu 10 170 -6 286 210 0 140 chr12 120065691 120065732 -24216757 + MIR SINE MIR 111 132 -130 2423 98 0 0 chr12 120065732 120066027 -24216462 + AluSg SINE Alu 1 295 -15 286 210 0 140 chr12 120066027 120066085 -24216404 + MIR SINE MIR 132 196 -66 1605 144 32 87 chr12 120066330 120066501 -24215988 - AluJb SINE Alu -8 304 156 1997 121 3 20 chr12 120066501 120066798 -24215691 - AluSx SINE Alu 0 312 21 1605 144 32 87 chr12 120066798 120066938 -24215551 - AluJb SINE Alu -156 156 10 1807 150 0 4 chr12 120066982 120067248 -24215241 + AluJo SINE Alu 1 265 -47 236 307 48 48 chr12 120067270 120067459 -24215030 + L1ME LINE L1 5688 5876 -288 2233 113 0 19 chr12 120067685 120067996 -24214493 + AluSx SINE Alu 1 305 -7 2363 84 7 0 chr12 120068230 120068529 -24213960 - AluSg SINE Alu -9 301 1 1182 158 0 0 chr12 120068531 120068708 -24213781 - FRAM SINE Alu -1 175 1 303 104 0 0 chr12 120068783 120068831 -24213658 + AluSc SINE Alu 252 299 0 1596 106 41 0 chr12 120068845 120069063 -24213426 + AluSp SINE Alu 1 227 -86 447 69 0 0 chr12 120069076 120069134 -24213355 - Alu SINE Alu -251 59 2 455 282 32 19 chr12 120069306 120069462 -24213027 - MIR SINE MIR -3 259 102 360 320 50 0 chr12 120069632 120069732 -24212757 + L2 LINE L2 3168 3272 0 247 264 42 14 chr12 120072275 120072347 -24210142 - MIR SINE MIR -140 122 49 984 113 0 0 chr12 120072347 120072480 -24210009 + AluJb SINE Alu 1 133 -179 2166 112 35 0 chr12 120072567 120072853 -24209636 - AluSx SINE Alu -16 296 1 601 243 41 18 chr12 120072979 120073148 -24209341 + MIR SINE MIR 20 192 -70 271 341 40 16 chr12 120074005 120074131 -24208358 - MIR SINE MIR -78 184 56 2491 80 0 0 chr12 120074131 120074433 -24208056 + AluSq SINE Alu 1 302 -11 2238 78 7 7 chr12 120074435 120074716 -24207773 + AluY SINE Alu 16 296 -15 1914 161 24 0 chr12 120074733 120075024 -24207465 - AluJb SINE Alu -14 298 1 1865 164 7 16 chr12 120075054 120075358 -24207131 - AluJb SINE Alu -11 301 1 2327 97 3 3 chr12 120075761 120076060 -24206429 - AluSq SINE Alu -14 299 1 1017 297 86 15 chr12 120076243 120076697 -24205792 + L2 LINE L2 2827 3312 -1 1863 158 47 0 chr12 120076709 120077007 -24205482 + AluJo SINE Alu 1 312 0 527 292 111 6 chr12 120077008 120077041 -24205448 - MIR SINE MIR -70 192 164 1224 209 172 51 chr12 120077041 120077535 -24204954 + MLT1H1 LTR MaLR 2 555 0 527 292 111 6 chr12 120077535 120077672 -24204817 - MIR SINE MIR -98 164 4 864 142 0 8 chr12 120078306 120078440 -24204049 + FLAM_C SINE Alu 1 133 0 2396 95 3 7 chr12 120078471 120078777 -24203712 + AluSg SINE Alu 1 305 -5 2237 105 0 0 chr12 120079362 120079678 -24202811 - AluSx SINE Alu 0 316 1 256 319 52 0 chr12 120079852 120079968 -24202521 + L2 LINE L2 2656 2777 -537 1372 163 10 0 chr12 120079983 120080192 -24202297 + AluJo SINE Alu 82 292 -20 1773 157 66 0 chr12 120080476 120080763 -24201726 - AluSg SINE Alu -4 306 1 2183 143 0 0 chr12 120081310 120081618 -24200871 + AluSx SINE Alu 1 308 -4 934 220 63 37 chr12 120081691 120082073 -24200416 - L1 LINE L1 -2660 3486 3095 198 0 0 0 chr12 120082085 120082107 -24200382 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 2437 78 0 0 chr12 120082108 120082403 -24200086 - AluY SINE Alu -15 296 2 2055 148 7 3 chr12 120082416 120082714 -24199775 - AluJo SINE Alu -12 300 2 2242 133 0 3 chr12 120082791 120083100 -24199389 + AluSx SINE Alu 1 308 -4 2141 84 36 36 chr12 120083482 120083618 -24198871 + AluSq SINE Alu 1 136 -177 2488 73 0 25 chr12 120083618 120083933 -24198556 + AluY SINE Alu 1 307 -4 2141 84 36 36 chr12 120083933 120084104 -24198385 + AluSq SINE Alu 135 308 -5 1059 186 10 5 chr12 120084139 120084338 -24198151 + MER20 DNA MER1_type 18 217 -2 1954 140 0 14 chr12 120084587 120084873 -24197616 + AluJo SINE Alu 1 282 -30 2457 87 0 3 chr12 120084874 120085184 -24197305 - AluSg SINE Alu 0 310 2 1264 148 10 0 chr12 120085187 120085390 -24197099 + AluSg/x SINE Alu 105 309 0 286 267 19 29 chr12 120085394 120085499 -24196990 - MER5B DNA MER1_type -48 130 27 562 273 58 19 chr12 120085905 120086059 -24196430 + MIR SINE MIR 12 171 -91 2088 130 20 0 chr12 120086641 120086933 -24195556 + AluJo SINE Alu 1 298 -14 1104 150 6 0 chr12 120087616 120087783 -24194706 + AluJb SINE Alu 129 296 -16 420 252 63 28 chr12 120088700 120088884 -24193605 + MIR SINE MIR 16 212 -50 878 212 0 0 chr12 120089071 120089252 -24193237 - FRAM SINE Alu 0 181 1 1996 159 24 71 chr12 120089253 120089454 -24193035 - L1MC2 LINE L1 -15 6329 6120 1613 127 45 4 chr12 120089454 120089699 -24192790 - AluSx SINE Alu -2 310 56 1996 159 24 71 chr12 120089699 120089883 -24192606 - L1MC2 LINE L1 -224 6120 5971 2462 89 0 3 chr12 120089883 120090186 -24192303 - AluSc SINE Alu -7 302 1 1996 159 24 71 chr12 120090186 120090303 -24192186 - L1MC2 LINE L1 -373 5971 5850 2097 144 0 0 chr12 120090384 120090675 -24191814 - AluJo SINE Alu -21 291 1 2173 169 62 11 chr12 120090692 120091143 -24191346 - L1MB7 LINE L1 -9 6175 5702 2211 118 7 0 chr12 120091155 120091451 -24191038 - AluSx SINE Alu -14 298 1 2339 102 3 3 chr12 120091456 120091759 -24190730 - AluSg SINE Alu -7 303 1 1477 174 38 56 chr12 120091853 120091990 -24190499 + AluJo SINE Alu 7 145 -167 1640 99 0 50 chr12 120091990 120092232 -24190257 + AluSg/x SINE Alu 81 310 0 1477 174 38 56 chr12 120092232 120092382 -24190107 + AluJo SINE Alu 145 289 -23 1586 191 7 14 chr12 120092489 120092771 -24189718 + AluJb SINE Alu 1 280 -32 1908 112 105 0 chr12 120092825 120093101 -24189388 - AluSg SINE Alu -5 305 1 538 274 75 47 chr12 120093185 120093271 -24189218 - L1MC2 LINE L1 -2021 5787 5705 1471 160 0 0 chr12 120093271 120093496 -24188993 + AluSg/x SINE Alu 83 307 -3 538 274 75 47 chr12 120093496 120093664 -24188825 - L1MC2 LINE L1 -2103 5705 5526 1078 172 0 0 chr12 120094411 120094574 -24187915 - FRAM SINE Alu -20 156 1 2147 102 0 7 chr12 120094593 120094877 -24187612 + AluSx SINE Alu 1 282 -30 484 98 0 0 chr12 120094886 120094947 -24187542 - AluSg/x SINE Alu -165 145 85 1237 168 9 31 chr12 120094947 120095030 -24187459 - AluJo SINE Alu -91 221 138 2244 105 3 7 chr12 120095030 120095335 -24187154 - AluSx SINE Alu -8 304 1 1237 168 9 31 chr12 120095335 120095477 -24187012 - AluJo SINE Alu -174 138 1 1189 151 25 63 chr12 120096281 120096520 -24185969 - AluJo SINE Alu -1 311 82 3303 167 14 38 chr12 120096538 120096874 -24185615 + L1MB7 LINE L1 5494 5837 -347 2369 98 69 20 chr12 120096874 120097221 -24185268 - THE1B LTR MaLR 0 364 1 3303 167 14 38 chr12 120097221 120097287 -24185202 + L1MB7 LINE L1 5837 5903 -281 2216 116 17 0 chr12 120097287 120097580 -24184909 + AluSx SINE Alu 3 300 -12 3303 167 14 38 chr12 120097580 120097841 -24184648 + L1MB7 LINE L1 5903 6142 -42 1957 103 12 100 chr12 120097841 120098004 -24184485 + AluSq SINE Alu 1 122 -191 2310 112 0 0 chr12 120098004 120098300 -24184189 + AluSg SINE Alu 5 300 -10 1957 103 12 100 chr12 120098300 120098466 -24184023 + AluSq SINE Alu 122 301 -12 2590 68 0 0 chr12 120098467 120098777 -24183712 + AluY SINE Alu 1 310 -1 2177 116 19 22 chr12 120098779 120099090 -24183399 + AluSg SINE Alu 1 310 0 30 69 0 0 chr12 120099090 120099148 -24183341 + AT_rich Low_complexity Low_complexity 1 58 0 183 129 0 0 chr12 120099150 120099181 -24183308 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 933 152 0 0 chr12 120099186 120099324 -24183165 + FLAM_C SINE Alu 3 140 -3 1464 203 21 10 chr12 120099326 120099616 -24182873 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr12 120099616 120099644 -24182845 + AT_rich Low_complexity Low_complexity 1 28 0 2548 71 3 7 chr12 120100334 120100643 -24181846 + AluSx SINE Alu 3 310 -2 28 0 0 0 chr12 120100681 120100709 -24181780 + AT_rich Low_complexity Low_complexity 1 28 0 431 313 117 17 chr12 120100716 120101074 -24181415 + L1ME4a LINE L1 5570 5963 -158 552 171 11 0 chr12 120101109 120101197 -24181292 + FLAM_A SINE Alu 4 92 -50 1791 148 8 0 chr12 120101234 120101491 -24180998 - AluJb SINE Alu -53 259 1 2337 80 21 0 chr12 120101611 120101898 -24180591 + AluSc SINE Alu 1 293 -16 2435 95 0 13 chr12 120101900 120102215 -24180274 + AluY SINE Alu 1 311 0 2207 116 10 0 chr12 120102558 120102851 -24179638 + AluSx SINE Alu 1 296 -16 2291 75 11 0 chr12 120102853 120103167 -24179322 + AluY SINE Alu 1 317 0 323 304 84 43 chr12 120103419 120103744 -24178745 - L2 LINE L2 -215 3057 2716 2158 117 10 3 chr12 120103744 120104043 -24178446 - AluSx SINE Alu -11 301 1 323 304 84 43 chr12 120104043 120104075 -24178414 - L2 LINE L2 -556 2716 2687 674 193 163 10 chr12 120104078 120104280 -24178209 + L1MB8 LINE L1 5946 6178 0 2312 99 0 0 chr12 120104291 120104584 -24177905 + AluSx SINE Alu 1 293 -19 619 301 154 29 chr12 120104584 120105033 -24177456 - L2 LINE L2 -610 2704 2200 1687 154 4 4 chr12 120105040 120105300 -24177189 + AluJo SINE Alu 1 260 -52 2173 120 0 3 chr12 120105893 120106193 -24176296 + AluSx SINE Alu 5 303 -9 1711 126 133 0 chr12 120106474 120106737 -24175752 - AluJo SINE Alu 0 302 5 2306 105 0 37 chr12 120106923 120107248 -24175241 + AluSp SINE Alu 1 313 0 2392 106 0 0 chr12 120107330 120107642 -24174847 - AluSx SINE Alu 0 312 1 3820 49 2 4 chr12 120107645 120108138 -24174351 - LTR13 LTR ERVK 0 1007 516 1094 62 0 0 chr12 120108134 120108278 -24174211 - LTR13 LTR ERVK -863 144 1 * 1953 161 23 3 chr12 120108463 120108768 -24173721 + AluJb SINE Alu 1 311 -1 2720 166 22 34 chr12 120109329 120109818 -24172671 + L1MB5 LINE L1 5644 6137 -37 2305 87 7 32 chr12 120109818 120109934 -24172555 + AluSx SINE Alu 1 118 -194 2609 53 0 0 chr12 120109934 120110233 -24172256 + AluY SINE Alu 1 299 -12 2305 87 7 32 chr12 120110233 120110426 -24172063 + AluSx SINE Alu 118 302 -10 1966 134 38 3 chr12 120110436 120110726 -24171763 + AluSx SINE Alu 6 305 -7 2720 166 22 34 chr12 120110726 120110762 -24171727 + L1MB5 LINE L1 6146 6174 0 221 255 0 0 chr12 120111000 120111051 -24171438 - L2 LINE L2 -11 3302 3252 1482 178 24 4 chr12 120111075 120111328 -24171161 - AluJb SINE Alu -9 303 46 1183 186 115 61 chr12 120111515 120111794 -24170695 - AluJo SINE Alu -8 294 1 915 138 114 6 chr12 120111860 120112027 -24170462 + MSTB LTR MaLR 5 189 -237 2824 120 7 5 chr12 120112040 120112465 -24170024 - LTR3 LTR ERVK -6 426 1 45679 22 10 5 chr12 120112467 120114758 -24167731 - HERVK3 LTR ERVK -2 7241 4964 2571 81 3 0 chr12 120114758 120115066 -24167423 - AluSc SINE Alu 0 309 1 45679 22 10 5 chr12 120115066 120116602 -24165887 - HERVK3 LTR ERVK -2279 4964 3438 8873 60 3 2 chr12 120116602 120117672 -24164817 - MER11C LTR ERVK 0 1071 1 45679 22 10 5 chr12 120117672 120120822 -24161667 - HERVK3 LTR ERVK -3805 3438 223 2273 47 0 4 chr12 120120822 120121100 -24161389 - AluY SINE Alu -6 305 29 45679 22 10 5 chr12 120121100 120121286 -24161203 - HERVK3 LTR ERVK -7020 223 40 2857 123 9 12 chr12 120121299 120121721 -24160768 - LTR3 LTR ERVK -7 425 5 1158 149 70 66 chr12 120121726 120121916 -24160573 + MSTB LTR MaLR 185 378 -48 2065 126 3 0 chr12 120121916 120122217 -24160272 + AluSx SINE Alu 1 302 -10 1158 149 70 66 chr12 120122217 120122267 -24160222 + MSTB LTR MaLR 378 426 0 810 156 17 73 chr12 120122367 120122494 -24159995 + L1MB2 LINE L1 6002 6118 -53 2162 104 0 3 chr12 120122494 120122791 -24159698 + AluSx SINE Alu 1 296 -16 810 156 17 73 chr12 120122791 120122842 -24159647 + L1MB2 LINE L1 6118 6170 -1 226 240 67 27 chr12 120122867 120122942 -24159547 + L3 LINE CR1 1254 1331 -246 23 54 0 0 chr12 120123193 120123230 -24159259 + AT_rich Low_complexity Low_complexity 1 37 0 2120 117 0 0 chr12 120123234 120123542 -24158947 - AluSp SINE Alu -1 312 5 463 198 216 18 chr12 120123542 120123653 -24158836 - AluJo SINE Alu -177 135 3 2008 111 60 20 chr12 120123830 120124303 -24158186 + MER51B LTR ERV1 1 377 0 319 173 40 13 chr12 120124532 120124607 -24157882 - MLT1K LTR MaLR -329 259 183 478 196 19 28 chr12 120124693 120124800 -24157689 + MER5A DNA MER1_type 7 112 -77 1148 133 0 0 chr12 120124820 120124985 -24157504 - AluSx SINE Alu -147 165 1 198 0 0 0 chr12 120125025 120125047 -24157442 + (TTA)n Simple_repeat Simple_repeat 3 24 0 45458 37 1 1 chr12 120125047 120131184 -24151305 - L1PA3 LINE L1 -18 6137 1 1132 101 0 0 chr12 120131191 120131340 -24151149 - AluSg SINE Alu -17 293 145 4854 144 87 36 chr12 120131340 120132356 -24150133 + pTR5 LTR ERV1 743 2025 -413 344 265 10 0 chr12 120132356 120132454 -24150035 + LTR30 LTR ERV1 544 642 -80 1621 73 0 9 chr12 120132457 120132676 -24149813 + pTR5 LTR ERV1 172 388 -2050 871 135 78 0 chr12 120132676 120132817 -24149672 - AluSg SINE Alu -158 152 1 32 0 0 0 chr12 120132817 120132849 -24149640 + AT_rich Low_complexity Low_complexity 1 32 0 2178 94 7 0 chr12 120132849 120133136 -24149353 - AluSx SINE Alu -23 289 1 664 271 110 4 chr12 120133136 120133372 -24149117 - MLT1F1 LTR MaLR -38 529 269 1486 186 125 47 chr12 120133373 120133682 -24148807 + MLT1C LTR MaLR 1 285 -182 2039 102 7 7 chr12 120133682 120133977 -24148512 - AluY SINE Alu -12 299 5 1892 117 0 27 chr12 120133983 120134283 -24148206 - AluSx SINE Alu -20 292 1 1486 186 125 47 chr12 120134283 120134391 -24148098 + MLT1C LTR MaLR 289 458 -9 292 252 132 58 chr12 120134398 120134587 -24147902 - MLT1E LTR MaLR -341 226 24 255 297 133 31 chr12 120134673 120134801 -24147688 - L2 LINE L2 0 3313 3173 2188 92 0 0 chr12 120134869 120135164 -24147325 + AluSx SINE Alu 1 295 -17 256 214 89 0 chr12 120135276 120135332 -24147157 + L2 LINE L2 3191 3251 -62 508 107 0 13 chr12 120135433 120135508 -24146981 + MADE1 DNA Mariner 2 75 -5 533 235 184 67 chr12 120135588 120135979 -24146510 - MLT1J2 LTR MaLR -2 444 8 1262 289 96 26 chr12 120135980 120136231 -24146258 + L2 LINE L2 2277 2509 -805 1598 145 42 11 chr12 120136231 120136514 -24145975 + AluJb SINE Alu 1 292 -20 1262 289 96 26 chr12 120136514 120136792 -24145697 + L2 LINE L2 2509 2843 -471 959 82 0 15 chr12 120136807 120136942 -24145547 - AluSq/x SINE Alu -180 133 1 668 328 137 9 chr12 120136942 120137366 -24145123 + L2 LINE L2 2831 3308 -5 291 295 66 66 chr12 120137434 120137600 -24144889 + MIR SINE MIR 35 200 -62 22 35 0 0 chr12 120138066 120138095 -24144394 + GC_rich Low_complexity Low_complexity 1 29 0 215 262 12 0 chr12 120138119 120138203 -24144286 + (CGG)n Simple_repeat Simple_repeat 2 86 0 203 133 0 0 chr12 120138383 120138413 -24144076 + (CCG)n Simple_repeat Simple_repeat 2 31 0 2234 70 0 32 chr12 120139675 120139990 -24142499 - AluY SINE Alu -6 305 1 1998 115 0 19 chr12 120140046 120140359 -24142130 - AluSc SINE Alu -2 307 1 255 275 99 44 chr12 120140456 120140547 -24141942 - L2 LINE L2 -30 3283 3188 743 256 134 0 chr12 120140586 120140911 -24141578 - L2 LINE L2 -228 3085 2716 1472 140 0 102 chr12 120141002 120141324 -24141165 - AluYa8 SINE Alu -21 289 1 436 204 28 161 chr12 120141337 120141508 -24140981 + MIR SINE MIR 74 213 -49 2162 93 0 3 chr12 120141508 120141798 -24140691 + AluSx SINE Alu 1 289 -23 436 204 28 161 chr12 120141798 120141837 -24140652 + MIR SINE MIR 213 256 -6 1201 201 68 36 chr12 120142255 120142359 -24140130 + Tigger7 DNA MER2_type 7 106 -2381 2201 95 7 10 chr12 120142359 120142665 -24139824 - AluSg SINE Alu -5 305 1 1201 201 68 36 chr12 120142665 120142809 -24139680 + Tigger7 DNA MER2_type 106 263 -2224 543 178 30 0 chr12 120142802 120142903 -24139586 + Tigger7 DNA MER2_type 2388 2491 0 * 1985 116 10 20 chr12 120142928 120143230 -24139259 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr12 120143458 120143479 -24139010 + AT_rich Low_complexity Low_complexity 1 21 0 2697 218 80 51 chr12 120143514 120144281 -24138208 - L1ME1 LINE L1 -34 6199 5456 2165 97 10 0 chr12 120144281 120144579 -24137910 - AluSx SINE Alu -11 301 1 2697 218 80 51 chr12 120144579 120144603 -24137886 - L1ME1 LINE L1 -777 5456 5434 1868 100 3 106 chr12 120144603 120144932 -24137557 - AluSx SINE Alu -17 295 1 2697 218 80 51 chr12 120144932 120144966 -24137523 - L1ME1 LINE L1 -799 5434 5349 675 120 0 0 chr12 120144967 120145090 -24137399 - FLAM_C SINE Alu 0 147 25 2043 115 6 34 chr12 120145109 120145430 -24137059 - AluSq SINE Alu -1 312 1 859 123 20 0 chr12 120145431 120145577 -24136912 - L1ME1 LINE L1 -865 5350 5202 1408 203 16 32 chr12 120145579 120145890 -24136599 - AluJo SINE Alu -4 308 3 2079 113 0 0 chr12 120145903 120146195 -24136294 - AluSg SINE Alu -18 292 1 3828 106 41 3 chr12 120146196 120146762 -24135727 + Tigger2 DNA MER2_type 851 1437 -1281 2257 79 7 0 chr12 120146763 120147066 -24135423 - AluSx SINE Alu -7 305 1 7138 138 52 13 chr12 120147067 120147207 -24135282 + Tigger2 DNA MER2_type 1500 1633 -1085 1879 143 0 0 chr12 120147207 120147494 -24134995 - AluSx SINE Alu -25 287 1 7138 138 52 13 chr12 120147494 120148523 -24133966 + Tigger2 DNA MER2_type 1633 2715 -3 791 239 98 14 chr12 120148525 120148644 -24133845 - L1ME1 LINE L1 -1602 4613 4505 2040 134 0 0 chr12 120148644 120148942 -24133547 - AluSx SINE Alu -14 298 1 791 239 98 14 chr12 120148942 120148968 -24133521 - L1ME1 LINE L1 -1710 4505 4483 2033 91 0 25 chr12 120148968 120149254 -24133235 + AluY SINE Alu 17 295 -16 791 239 98 14 chr12 120149254 120149404 -24133085 - L1ME1 LINE L1 -1732 4483 4292 2105 112 0 0 chr12 120149409 120149703 -24132786 - AluSx SINE Alu -18 294 1 2198 245 46 64 chr12 120149713 120150094 -24132395 - L1M4c LINE L1 -2192 4452 4065 2186 96 3 16 chr12 120150094 120150407 -24132082 - AluSc SINE Alu 0 309 1 2198 245 46 64 chr12 120150407 120150446 -24132043 - L1M4c LINE L1 -2579 4065 4027 373 157 0 0 chr12 120150446 120150497 -24131992 + Alu SINE Alu 2 52 -250 2198 245 46 64 chr12 120150497 120150524 -24131965 - L1M4c LINE L1 -2617 4027 4001 1126 173 28 23 chr12 120150524 120150738 -24131751 + MER20 DNA MER1_type 3 217 -2 2198 245 46 64 chr12 120150738 120151415 -24131074 - L1M4c LINE L1 -2643 4001 3313 2151 107 3 0 chr12 120151415 120151706 -24130783 + AluSg SINE Alu 1 292 -18 2198 245 46 64 chr12 120151706 120151718 -24130771 - L1M4c LINE L1 -3331 3313 3302 2308 92 3 0 chr12 120151718 120152023 -24130466 - AluSp SINE Alu -7 306 1 2198 245 46 64 chr12 120152023 120152167 -24130322 - L1M4c LINE L1 -3342 3302 3216 259 267 16 91 chr12 120152185 120152264 -24130225 - L1ME1 LINE L1 -4368 2028 1945 2131 129 0 3 chr12 120152264 120152575 -24129914 - AluSx SINE Alu -2 310 1 259 267 16 91 chr12 120152575 120152813 -24129676 - L1ME1 LINE L1 -4451 1945 1735 305 261 65 33 chr12 120152853 120153006 -24129483 - L1M4c LINE L1 -4338 2487 2330 2027 273 88 31 chr12 120153028 120153101 -24129388 - L1M4c LINE L1 -4474 2170 2103 1996 112 0 40 chr12 120153101 120153422 -24129067 - AluSx SINE Alu -4 308 1 2027 273 88 31 chr12 120153422 120153729 -24128760 - L1M4c LINE L1 -4541 2103 1815 1836 148 0 28 chr12 120153729 120153758 -24128731 - AluJb SINE Alu -4 308 280 219 36 0 0 chr12 120153758 120153786 -24128703 + (TG)n Simple_repeat Simple_repeat 1 28 0 1836 148 0 28 chr12 120153786 120154073 -24128416 - AluJb SINE Alu -32 280 1 2027 273 88 31 chr12 120154073 120154409 -24128080 - L1M4c LINE L1 -4829 1815 1500 2203 100 3 0 chr12 120154409 120154709 -24127780 - AluSg SINE Alu -9 301 1 2027 273 88 31 chr12 120154709 120155142 -24127347 - L1M4c LINE L1 -5144 1500 893 23 0 0 53 chr12 120155142 120155159 -24127330 + AT_rich Low_complexity Low_complexity 1 17 -19 1944 92 51 0 chr12 120155159 120155432 -24127057 - AluSg SINE Alu -23 287 1 23 0 0 53 chr12 120155432 120155452 -24127037 + AT_rich Low_complexity Low_complexity 17 36 0 2308 90 3 0 chr12 120155506 120155816 -24126673 - AluSq SINE Alu -1 312 2 1034 96 0 0 chr12 120155817 120155953 -24126536 + AluSp/q SINE Alu 162 297 -16 233 221 29 44 chr12 120155993 120156061 -24126428 - L1M4c LINE L1 -5654 888 822 273 85 0 85 chr12 120156079 120156126 -24126363 - tRNA-Cys-TGC tRNA tRNA -32 43 1 317 308 77 50 chr12 120156494 120156676 -24125813 - L1M4c LINE L1 -6296 246 60 1798 92 8 0 chr12 120156787 120157036 -24125453 + AluSq SINE Alu 43 293 -20 243 252 7 126 chr12 120157118 120157187 -24125302 + MER5B DNA MER1_type 57 104 -74 2242 91 10 0 chr12 120157187 120157494 -24124995 - AluSg SINE Alu 0 310 1 243 252 7 126 chr12 120157494 120157559 -24124930 + MER5B DNA MER1_type 104 175 -3 1011 206 11 0 chr12 120157584 120157768 -24124721 - MER58A DNA MER1_type -9 215 30 2074 101 31 0 chr12 120158287 120158574 -24123915 + AluSx SINE Alu 1 296 -16 229 296 136 8 chr12 120159016 120159141 -24123348 + MIR3 SINE MIR 44 184 -24 2163 94 7 0 chr12 120159475 120159772 -24122717 - AluSp SINE Alu -13 300 2 1416 162 0 58 chr12 120159875 120160134 -24122355 + AluJo SINE Alu 21 265 -47 1674 86 0 5 chr12 120160134 120160355 -24122134 - AluSc SINE Alu -76 233 14 1416 162 0 58 chr12 120160355 120160373 -24122116 + AluJo SINE Alu 265 282 -30 2294 89 0 0 chr12 120161424 120161727 -24120762 + AluSc SINE Alu 1 303 -6 2165 89 28 0 chr12 120162479 120162770 -24119719 - AluSp SINE Alu -14 299 1 1843 134 17 13 chr12 120162796 120163094 -24119395 - AluJb SINE Alu -11 301 3 199 174 0 58 chr12 120163618 120163687 -24118802 + CT-rich Low_complexity Low_complexity 1 65 0 349 291 19 32 chr12 120163687 120163845 -24118644 - L1MC5 LINE L1 -36 7925 7770 204 97 0 0 chr12 120164560 120164591 -24117898 + (T)n Simple_repeat Simple_repeat 1 31 0 2022 122 0 10 chr12 120167227 120167538 -24114951 + AluY SINE Alu 1 308 -3 1784 224 107 38 chr12 120167554 120168395 -24114094 - L1ME1 LINE L1 -5 6659 5732 2067 176 151 0 chr12 120168398 120168829 -24113660 - MLT1D LTR MaLR -9 496 1 2209 192 97 61 chr12 120168840 120169201 -24113288 - L1ME1 LINE L1 -918 5726 5379 2076 80 7 14 chr12 120169201 120169511 -24112978 - AluSq SINE Alu 0 308 1 2209 192 97 61 chr12 120169511 120169981 -24112508 - L1ME1 LINE L1 -1265 5379 4927 2210 118 0 0 chr12 120169981 120170277 -24112212 + AluSq SINE Alu 1 296 -17 2209 192 97 61 chr12 120170277 120170324 -24112165 - L1ME1 LINE L1 -1717 4927 4883 2281 91 29 13 chr12 120170324 120170631 -24111858 - AluSq SINE Alu -1 312 1 2209 192 97 61 chr12 120170631 120170642 -24111847 - L1ME1 LINE L1 -1761 4883 4874 2466 69 0 10 chr12 120170642 120170945 -24111544 - AluY SINE Alu -11 300 1 2209 192 97 61 chr12 120170945 120171044 -24111445 - L1ME1 LINE L1 -1770 4874 4731 868 252 70 105 chr12 120171068 120171497 -24110992 - L1MCc LINE L1 -5163 1260 847 854 288 28 34 chr12 120171487 120171792 -24110697 - L1MCc LINE L1 -6008 415 111 * 2219 109 3 3 chr12 120171792 120172095 -24110394 + AluSx SINE Alu 1 303 -9 854 288 28 34 chr12 120172095 120172116 -24110373 - L1MCc LINE L1 -6312 111 91 1032 79 0 84 chr12 120172169 120172347 -24110142 + L1PA15 LINE L1 6001 6163 -2 226 234 100 115 chr12 120172351 120172620 -24109869 - L1ME1 LINE L1 -4836 1706 1442 1208 181 25 4 chr12 120172653 120172891 -24109598 - L1M2 LINE L1 -653 5659 5417 2228 99 7 7 chr12 120172894 120173187 -24109302 - AluSx SINE Alu -19 293 1 1020 200 10 58 chr12 120173248 120173543 -24108946 - L1MC/D LINE L1 -806 5538 5258 1855 155 0 36 chr12 120173551 120173860 -24108629 - AluJb SINE Alu -14 298 1 3482 189 28 71 chr12 120173912 120174267 -24108222 - L1MC/D LINE L1 -883 5263 4894 2235 79 7 0 chr12 120174267 120174587 -24107902 - AluY SINE Alu 0 322 1 3482 189 28 71 chr12 120174587 120175187 -24107302 - L1MC/D LINE L1 -1252 4894 4348 2394 90 7 0 chr12 120175256 120175556 -24106933 - AluSq SINE Alu -11 302 1 200 184 20 41 chr12 120176859 120176908 -24105581 + MIR SINE MIR 209 256 -6 2324 110 0 0 chr12 120176941 120177242 -24105247 - AluSx SINE Alu -11 301 1 2422 86 0 3 chr12 120177272 120177574 -24104915 - AluSx SINE Alu -11 301 1 2396 68 0 3 chr12 120177967 120178259 -24104230 + AluSc SINE Alu 1 291 -18 2318 92 0 29 chr12 120178959 120179274 -24103215 + AluSg SINE Alu 1 306 -4 2123 112 0 0 chr12 120180094 120180379 -24102110 - AluSx SINE Alu -27 285 1 2106 114 7 10 chr12 120183258 120183548 -24098941 + AluSx SINE Alu 1 289 -23 369 0 0 0 chr12 120183683 120183724 -24098765 + (CA)n Simple_repeat Simple_repeat 2 42 0 208 229 0 0 chr12 120184897 120184945 -24097544 + (TG)n Simple_repeat Simple_repeat 1 48 0 2246 110 0 0 chr12 120186536 120186826 -24095663 - AluSx SINE Alu -22 290 1 2005 123 0 27 chr12 120186943 120187270 -24095219 - AluSx SINE Alu 0 319 1 2250 94 0 44 chr12 120187380 120187700 -24094789 + AluY SINE Alu 1 306 -5 2528 212 96 50 chr12 120187701 120188614 -24093875 - L1ME3A LINE L1 -14 6156 5203 23 97 0 0 chr12 120188953 120189025 -24093464 + AT_rich Low_complexity Low_complexity 1 72 0 2332 107 0 0 chr12 120189580 120189889 -24092600 - AluSq SINE Alu -4 309 1 2135 92 40 0 chr12 120189901 120190205 -24092284 - AluSq SINE Alu 0 315 1 255 61 0 0 chr12 120190633 120190666 -24091823 + (TG)n Simple_repeat Simple_repeat 1 33 0 2507 65 0 16 chr12 120190966 120191274 -24091215 - AluY SINE Alu -8 303 1 2239 90 0 0 chr12 120191423 120191702 -24090787 - AluSg SINE Alu -31 279 1 2255 108 0 10 chr12 120192720 120193017 -24089472 + AluSx SINE Alu 1 294 -18 708 191 0 0 chr12 120193017 120193132 -24089357 - FLAM_A SINE Alu -18 115 1 2325 86 0 0 chr12 120194050 120194340 -24088149 - AluSx SINE Alu -20 292 3 21 0 0 0 chr12 120197362 120197383 -24085106 + AT_rich Low_complexity Low_complexity 1 21 0 324 188 0 0 chr12 120197503 120197567 -24084922 + GA-rich Low_complexity Low_complexity 3 66 0 29 70 0 0 chr12 120197719 120197776 -24084713 + AT_rich Low_complexity Low_complexity 1 57 0 1928 102 34 0 chr12 120198348 120198613 -24083876 - AluSg SINE Alu -2 308 35 2145 135 0 3 chr12 120198795 120199106 -24083383 + AluSx SINE Alu 1 310 -2 29 0 0 0 chr12 120199126 120199155 -24083334 + AT_rich Low_complexity Low_complexity 1 29 0 1755 168 3 30 chr12 120199265 120199568 -24082921 + AluJo SINE Alu 1 295 -17 305 290 166 30 chr12 120199569 120199738 -24082751 - MIR SINE MIR -23 239 48 21 0 0 0 chr12 120199777 120199798 -24082691 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 120200099 120200121 -24082368 + AT_rich Low_complexity Low_complexity 1 22 0 499 162 36 18 chr12 120200131 120200242 -24082247 + L1MA2 LINE L1 18 130 -7435 20299 123 29 43 chr12 120200242 120203365 -24079124 + L1MA2 LINE L1 344 3422 -4143 2130 123 0 0 chr12 120203365 120203650 -24078839 - AluSx SINE Alu -27 285 1 20299 123 29 43 chr12 120203650 120203937 -24078552 + L1MA2 LINE L1 3422 3711 -3854 2461 93 0 3 chr12 120203937 120204247 -24078242 + AluSp SINE Alu 1 309 -4 10153 127 35 37 chr12 120204248 120206056 -24076433 + L1MA2 LINE L1 4936 6737 -986 2470 65 3 0 chr12 120206056 120206348 -24076141 + AluY SINE Alu 1 293 -18 10153 127 35 37 chr12 120206348 120206811 -24075678 + L1MA2 LINE L1 6737 7199 -524 1357 181 0 5 chr12 120206811 120207032 -24075457 + AluJb SINE Alu 1 220 -92 3783 92 13 0 chr12 120207032 120207553 -24074936 + L1MA2 LINE L1 7196 7723 0 551 188 94 0 chr12 120207600 120207696 -24074793 - FRAM SINE Alu -30 146 42 767 161 31 8 chr12 120207708 120207838 -24074651 - FLAM_C SINE Alu -9 134 2 348 135 0 0 chr12 120209091 120209143 -24073346 - MER63 DNA MER1_type -333 727 676 1700 178 10 16 chr12 120209145 120209454 -24073035 + AluJb SINE Alu 1 307 -5 1585 182 53 59 chr12 120209590 120209904 -24072585 + L1MB8 LINE L1 5506 5820 -358 1732 150 0 86 chr12 120209904 120210105 -24072384 + AluJo SINE Alu 1 218 -94 2354 99 0 13 chr12 120210105 120210409 -24072080 - AluSx SINE Alu -12 300 1 1732 150 0 86 chr12 120210409 120210503 -24071986 + AluJo SINE Alu 218 268 -44 2392 73 7 13 chr12 120210503 120210803 -24071686 - AluY SINE Alu -13 298 1 1732 150 0 86 chr12 120210803 120210833 -24071656 + AluJo SINE Alu 268 299 -13 1585 182 53 59 chr12 120210833 120210892 -24071597 + L1MB8 LINE L1 5820 5877 -301 2482 74 0 0 chr12 120210893 120211189 -24071300 + AluY SINE Alu 1 296 -15 1364 212 102 39 chr12 120211219 120211728 -24070761 - L1M4 LINE L1 -1314 4832 4292 * 2879 220 18 30 chr12 120211727 120212316 -24070173 - L1M4 LINE L1 -2079 4067 3489 2365 81 37 0 chr12 120212316 120212613 -24069876 - AluSp SINE Alu -4 309 2 2879 220 18 30 chr12 120212613 120212815 -24069674 - L1M4 LINE L1 -2657 3489 3286 1802 94 13 4 chr12 120212843 120213077 -24069412 + AluSc SINE Alu 1 236 -73 971 75 23 0 chr12 120213077 120213210 -24069279 + AluSg/x SINE Alu 177 312 0 2250 78 0 14 chr12 120213302 120213619 -24068870 - AluY SINE Alu 0 321 9 2237 122 0 0 chr12 120213771 120214067 -24068422 - AluSx SINE Alu -16 296 1 23 0 0 0 chr12 120214297 120214320 -24068169 + AT_rich Low_complexity Low_complexity 1 23 0 751 184 64 0 chr12 120214534 120214654 -24067835 + AluJo SINE Alu 2 134 -178 279 0 0 0 chr12 120214654 120214685 -24067804 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 751 184 64 0 chr12 120214685 120214705 -24067784 + AluJo SINE Alu 134 151 -161 2085 128 4 0 chr12 120214780 120215094 -24067395 + AluSx SINE Alu 1 315 0 1500 177 15 0 chr12 120215108 120215374 -24067115 + AluSx SINE Alu 43 312 0 2444 90 0 6 chr12 120215376 120215687 -24066802 + AluY SINE Alu 3 311 0 23 33 0 0 chr12 120215819 120215849 -24066640 + AT_rich Low_complexity Low_complexity 1 30 0 819 133 7 22 chr12 120216054 120216189 -24066300 + AluJb SINE Alu 1 133 -179 702 199 41 18 chr12 120216246 120216417 -24066072 + L1MC2 LINE L1 2644 2818 -3328 235 169 62 0 chr12 120216437 120216502 -24065987 + L1MB2 LINE L1 6103 6171 0 418 202 21 0 chr12 120216522 120216616 -24065873 + L1MC2 LINE L1 2800 2895 -3251 1301 131 40 0 chr12 120216616 120216814 -24065675 + AluJo SINE Alu 1 206 -106 8737 195 56 31 chr12 120216854 120217540 -24064949 + L1MC2 LINE L1 2879 3546 -2798 2275 126 0 0 chr12 120217540 120217849 -24064640 + AluSg SINE Alu 1 309 -1 8737 195 56 31 chr12 120217849 120219352 -24063137 + L1MC2 LINE L1 3546 5009 -1335 1617 155 0 19 chr12 120219352 120219616 -24062873 - AluJb SINE Alu -53 259 1 8737 195 56 31 chr12 120219616 120219957 -24062532 + L1MC2 LINE L1 5009 5340 -1004 2169 109 3 13 chr12 120219957 120220269 -24062220 + AluSc SINE Alu 1 309 0 8737 195 56 31 chr12 120220269 120221077 -24061412 + L1MC2 LINE L1 5340 6295 -49 2265 99 0 3 chr12 120221849 120222152 -24060337 + AluSx SINE Alu 1 302 -10 1715 187 0 32 chr12 120222512 120222827 -24059662 - AluJo SINE Alu -7 305 1 834 80 0 0 chr12 120223176 120223276 -24059213 + AluS SINE Alu 1 100 -212 2293 123 0 0 chr12 120225052 120225362 -24057127 + AluSq SINE Alu 1 310 -3 1073 82 11 28 chr12 120225362 120225544 -24056945 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 2219 94 7 7 chr12 120225576 120225873 -24056616 + AluSx SINE Alu 5 301 -11 413 146 12 37 chr12 120226656 120226738 -24055751 + MER116 DNA Mariner 1 80 0 2433 90 0 0 chr12 120228832 120229131 -24053358 + AluSx SINE Alu 1 299 -13 2467 71 0 26 chr12 120229360 120229669 -24052820 - AluY SINE Alu -10 301 1 2191 107 10 0 chr12 120230355 120230654 -24051835 + AluSg SINE Alu 3 304 -6 2160 113 3 10 chr12 120230970 120231270 -24051219 - AluSx SINE Alu -14 298 1 432 0 0 0 chr12 120231487 120231535 -24050954 + (TG)n Simple_repeat Simple_repeat 2 49 0 1864 148 22 0 chr12 120231535 120231812 -24050677 - AluSx SINE Alu -27 285 3 23 33 0 0 chr12 120232176 120232206 -24050283 + AT_rich Low_complexity Low_complexity 1 30 0 312 360 7 27 chr12 120233691 120233841 -24048648 - MIR3 SINE MIR -17 191 45 2281 113 0 0 chr12 120235046 120235346 -24047143 + AluSc SINE Alu 1 300 -9 1681 155 3 92 chr12 120235389 120235724 -24046765 + AluJo SINE Alu 1 305 -7 501 17 0 0 chr12 120235754 120235812 -24046677 + (TG)n Simple_repeat Simple_repeat 1 58 0 2235 115 0 0 chr12 120235864 120236152 -24046337 + AluSx SINE Alu 1 288 -24 251 224 0 0 chr12 120236152 120236210 -24046279 + (TA)n Simple_repeat Simple_repeat 1 58 0 640 182 0 0 chr12 120236231 120236330 -24046159 - AluJb SINE Alu -7 305 207 210 191 0 0 chr12 120236340 120236382 -24046107 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 245 130 0 0 chr12 120236382 120236428 -24046061 - LTR66 LTR ERVL -171 439 394 233 119 0 0 chr12 120236394 120236436 -24046053 + LTR66 LTR ERVL 398 439 -171 * 2269 108 0 0 chr12 120236969 120237264 -24045225 + AluSc SINE Alu 1 295 -14 855 198 83 0 chr12 120237325 120237517 -24044972 - MER3 DNA MER1_type 0 209 2 332 233 6 183 chr12 120237738 120237801 -24044688 - MIR3 SINE MIR -3 205 132 2369 107 3 0 chr12 120237801 120238111 -24044378 - AluSp SINE Alu -2 311 1 332 233 6 183 chr12 120238111 120238133 -24044356 - MIR3 SINE MIR -76 132 108 2427 80 0 6 chr12 120238133 120238445 -24044044 - AluY SINE Alu -1 310 1 332 233 6 183 chr12 120238445 120238538 -24043951 - MIR3 SINE MIR -100 108 58 375 89 0 0 chr12 120238632 120238688 -24043801 + (TG)n Simple_repeat Simple_repeat 1 56 0 1465 158 142 11 chr12 120238837 120239097 -24043392 - AluJb SINE Alu -8 294 1 2149 112 0 10 chr12 120239405 120239710 -24042779 - AluSq SINE Alu -11 302 1 633 272 24 19 chr12 120240028 120240234 -24042255 + L1MEc LINE L1 22 228 -6168 965 106 23 0 chr12 120240252 120240384 -24042105 + AluSc SINE Alu 1 135 -174 1036 279 88 20 chr12 120240389 120240798 -24041691 + L1MEc LINE L1 248 684 -5712 1144 134 6 0 chr12 120240798 120240969 -24041520 + AluSg/x SINE Alu 130 301 -9 1972 78 0 4 chr12 120241001 120241246 -24041243 + AluSg/x SINE Alu 68 311 -1 1740 107 30 15 chr12 120241631 120241893 -24040596 + MER47A DNA MER2_type 1 266 -100 441 158 11 53 chr12 120241950 120242045 -24040444 + MER65A-int LTR ERV1 3642 3732 -2866 3301 113 55 10 chr12 120242081 120242570 -24039919 - MER9 LTR ERVK 0 511 1 1781 203 114 73 chr12 120242626 120242669 -24039820 + MER65A-int LTR ERV1 2477 2517 -2419 944 59 59 30 chr12 120242669 120242804 -24039685 - MER85 DNA T2_type 0 139 1 1781 203 114 73 chr12 120242804 120243795 -24038694 + MER65A-int LTR ERV1 2517 3498 -1438 255 326 34 0 chr12 120244274 120244363 -24038126 + L2 LINE L2 3166 3257 -15 22 0 0 0 chr12 120244578 120244600 -24037889 + AT_rich Low_complexity Low_complexity 1 22 0 1396 162 35 121 chr12 120244670 120244791 -24037698 + AluJo SINE Alu 1 131 -181 180 0 0 0 chr12 120244791 120244811 -24037678 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1396 162 35 121 chr12 120244811 120245029 -24037460 + AluJo SINE Alu 131 311 -1 1089 224 9 22 chr12 120245032 120245350 -24037139 + MER65A-int LTR ERV1 3078 3792 -1144 2393 247 20 21 chr12 120245376 120245707 -24036782 + MER65A-int LTR ERV1 3519 3849 -1087 2070 123 3 14 chr12 120245707 120246035 -24036454 + AluSx SINE Alu 1 312 0 2393 247 20 21 chr12 120246035 120246348 -24036141 + MER65A-int LTR ERV1 3849 4391 -545 6698 90 26 2 chr12 120246368 120247705 -24034784 + L1PA13 LINE L1 4804 6161 -2 2135 111 0 4 chr12 120247821 120248126 -24034363 + AluSc SINE Alu 1 304 0 2621 208 50 48 chr12 120248151 120248345 -24034144 + MER65A-int LTR ERV1 4177 4369 -502 3837 59 20 0 chr12 120248345 120248789 -24033700 + MLT2A2 LTR ERVL 1 453 0 2621 208 50 48 chr12 120248789 120249287 -24033202 + MER65A-int LTR ERV1 4369 4871 0 2439 137 84 12 chr12 120249287 120249702 -24032787 + MER65A LTR ERV1 1 445 0 429 247 74 62 chr12 120250355 120250517 -24031972 - MIR SINE MIR -52 210 47 1120 213 54 1 chr12 120250786 120251219 -24031270 + LTR22 LTR ERVK 10 509 0 2426 124 32 3 chr12 120251552 120251890 -24030599 + MER7A DNA MER2_type 1 346 0 6505 87 20 34 chr12 120252368 120254174 -24028315 + SVA Other Other 12 1386 0 30939 89 8 9 chr12 120254174 120256087 -24026402 + L1PA7 LINE L1 942 2855 -3299 2441 83 0 10 chr12 120256087 120256401 -24026088 + AluY SINE Alu 1 311 0 30939 89 8 9 chr12 120256401 120259692 -24022797 + L1PA7 LINE L1 2855 6138 -16 2380 84 0 10 chr12 120260038 120260337 -24022152 + AluSc SINE Alu 1 296 -13 1808 171 0 20 chr12 120260567 120260871 -24021618 - AluJo SINE Alu -12 300 3 1899 146 3 37 chr12 120261522 120261845 -24020644 + AluSx SINE Alu 1 312 0 2220 123 3 0 chr12 120261904 120262205 -24020284 + AluSx SINE Alu 1 302 -10 226 374 11 22 chr12 120263091 120263182 -24019307 - MIR SINE MIR -102 106 17 27 73 0 0 chr12 120263363 120263418 -24019071 + AT_rich Low_complexity Low_complexity 1 55 0 3405 259 24 24 chr12 120263593 120264555 -24017934 + L1MEc LINE L1 9 970 -5426 2309 110 7 0 chr12 120264592 120264902 -24017587 + AluSx SINE Alu 1 312 0 2368 90 3 0 chr12 120264918 120265218 -24017271 + AluSp SINE Alu 1 301 -12 936 147 33 71 chr12 120265270 120265454 -24017035 - AluSg/x SINE Alu -2 310 134 2103 105 3 13 chr12 120265454 120265759 -24016730 - AluY SINE Alu -9 302 1 2929 256 80 33 chr12 120265778 120265864 -24016625 + L1MEc LINE L1 1071 1152 -5244 1901 132 3 55 chr12 120265864 120266191 -24016298 + AluSx SINE Alu 1 310 -2 2929 256 80 33 chr12 120266191 120266466 -24016023 + L1MEc LINE L1 1152 1413 -4983 2365 75 0 20 chr12 120266466 120266771 -24015718 - AluY SINE Alu -12 299 1 2929 256 80 33 chr12 120266771 120267672 -24014817 + L1MEc LINE L1 1413 2393 -4003 1481 193 20 20 chr12 120267676 120267976 -24014513 + AluJo SINE Alu 5 304 -8 2174 195 92 39 chr12 120268045 120268477 -24014012 + L1MEc LINE L1 2357 2765 -3450 2149 123 10 3 chr12 120268477 120268779 -24013710 + AluSx SINE Alu 2 305 -7 1904 107 0 11 chr12 120268782 120269043 -24013446 + AluSc SINE Alu 46 303 -6 2174 195 92 39 chr12 120269043 120269267 -24013222 + L1MEc LINE L1 2766 3052 -3163 489 175 144 10 chr12 120269270 120269367 -24013122 + FLAM_A SINE Alu 12 121 -21 674 204 138 0 chr12 120269382 120269549 -24012940 + L1MEc LINE L1 3032 3221 -2994 1519 124 146 11 chr12 120269549 120269824 -24012665 + AluSq SINE Alu 1 312 -1 3608 210 31 53 chr12 120269829 120270240 -24012249 + L1MEc LINE L1 3835 4253 -1962 2114 112 9 47 chr12 120270240 120270562 -24011927 + AluSx SINE Alu 1 310 -2 3608 210 31 53 chr12 120270562 120271035 -24011454 + L1MEc LINE L1 4253 4697 -1518 1624 173 0 37 chr12 120271035 120271335 -24011154 - AluJo SINE Alu -23 289 1 3608 210 31 53 chr12 120271335 120271473 -24011016 + L1MEc LINE L1 4697 4836 -1379 401 277 0 10 chr12 120271465 120271566 -24010923 + L1MC2 LINE L1 140 239 -6325 * 1566 233 35 42 chr12 120271564 120271871 -24010618 + L1MC2 LINE L1 452 757 -5288 1817 103 4 30 chr12 120271871 120272133 -24010356 - AluSg SINE Alu -3 307 53 1566 233 35 42 chr12 120272133 120272258 -24010231 + L1MC2 LINE L1 757 881 -5164 777 53 0 0 chr12 120272258 120272388 -24010101 + AluSp/q SINE Alu 182 282 -31 4071 199 168 30 chr12 120272399 120273282 -24009207 + L1MC2 LINE L1 894 1653 -4911 573 83 36 0 chr12 120273282 120273366 -24009123 + L1MB5 LINE L1 6080 6166 -8 4071 199 168 30 chr12 120273366 120274005 -24008484 + L1MC2 LINE L1 1653 2202 -4362 2336 76 14 3 chr12 120274005 120274294 -24008195 + AluSg SINE Alu 7 298 -12 4071 199 168 30 chr12 120274294 120274374 -24008115 + L1MC2 LINE L1 2202 2270 -4294 1743 177 25 30 chr12 120274374 120274741 -24007748 + MLT1A1 LTR MaLR 1 365 0 4071 199 168 30 chr12 120274741 120274756 -24007733 + L1MC2 LINE L1 2270 2730 -3834 834 191 65 17 chr12 120274749 120274980 -24007509 + L1MC2 LINE L1 5254 5495 -1069 * 1969 178 87 23 chr12 120275032 120275515 -24006974 + L1MB5 LINE L1 5661 6174 0 * 4563 168 71 13 chr12 120275491 120276635 -24005854 + L1MC2 LINE L1 5553 6761 -1 1931 147 31 0 chr12 120276671 120276963 -24005526 + AluJb SINE Alu 1 301 -11 252 100 250 0 chr12 120276963 120277023 -24005466 + L1MA10 LINE L1 6259 6333 -1 1346 289 62 72 chr12 120277035 120277626 -24004863 + L1M4 LINE L1 2 597 -5945 3371 120 10 31 chr12 120277626 120278184 -24004305 + L1MA8 LINE L1 5708 6255 -36 2117 122 3 3 chr12 120278184 120278480 -24004009 - AluSx SINE Alu -16 296 1 3371 120 10 31 chr12 120278480 120278506 -24003983 + L1MA8 LINE L1 6255 6280 -11 225 0 0 0 chr12 120278512 120278537 -24003952 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 1346 289 62 72 chr12 120278537 120278883 -24003606 + L1M4 LINE L1 602 937 -5605 1466 141 55 79 chr12 120278883 120279035 -24003454 + AluJo SINE Alu 1 155 -156 2207 108 7 20 chr12 120279035 120279340 -24003149 + AluSx SINE Alu 1 301 -11 1466 141 55 79 chr12 120279340 120279505 -24002984 + AluJo SINE Alu 155 311 0 2271 177 24 43 chr12 120279509 120280086 -24002403 + L1MB3 LINE L1 3441 4006 -2140 2229 97 19 71 chr12 120280086 120280510 -24001979 + L1MA2 LINE L1 5781 6182 -122 1313 108 5 9 chr12 120280510 120280720 -24001769 + L1MA2 LINE L1 6092 6304 0 4914 174 65 28 chr12 120280942 120281157 -24001332 + L1MB3 LINE L1 4029 4234 -1949 222 37 0 0 chr12 120281157 120281184 -24001305 + (CA)n Simple_repeat Simple_repeat 2 28 0 4914 174 65 28 chr12 120281184 120281473 -24001016 + L1MB3 LINE L1 4234 4511 -1672 1925 132 7 30 chr12 120281473 120281776 -24000713 - AluJo SINE Alu -16 296 1 4914 174 65 28 chr12 120281776 120281958 -24000531 + L1MB3 LINE L1 4511 4685 -1498 1960 166 0 10 chr12 120281958 120282259 -24000230 + AluJb SINE Alu 6 303 -9 4914 174 65 28 chr12 120282259 120282407 -24000082 + L1MB3 LINE L1 4685 4826 -1357 2014 152 3 0 chr12 120282407 120282703 -23999786 + AluJo SINE Alu 1 297 -15 4914 174 65 28 chr12 120282703 120283102 -23999387 + L1MB3 LINE L1 4826 5208 -975 2214 113 0 17 chr12 120283102 120283404 -23999085 + AluSx SINE Alu 1 297 -15 4914 174 65 28 chr12 120283404 120284227 -23998262 + L1MB3 LINE L1 5208 6181 -2 242 65 0 43 chr12 120284233 120284279 -23998210 + L1MB3 LINE L1 6139 6182 -1 2130 92 3 27 chr12 120284291 120284583 -23997906 + AluSc SINE Alu 1 285 -24 2339 90 0 7 chr12 120284589 120284899 -23997590 + AluSg SINE Alu 1 308 -2 925 297 44 57 chr12 120284961 120285682 -23996807 + L1ME LINE L1 74 785 -5285 486 191 48 48 chr12 120285696 120285843 -23996646 + L1MA10 LINE L1 6188 6334 0 2480 71 0 0 chr12 120285853 120286149 -23996340 + AluY SINE Alu 1 296 -15 326 291 82 0 chr12 120286180 120286290 -23996199 - MIR SINE MIR -98 164 46 235 275 33 0 chr12 120286717 120286808 -23995681 + L1ME LINE L1 5804 5897 -224 2544 70 0 0 chr12 120286818 120287119 -23995370 + AluSc SINE Alu 1 301 -8 2409 73 3 7 chr12 120287120 120287421 -23995068 + AluY SINE Alu 1 300 -11 2387 73 0 0 chr12 120288149 120288436 -23994053 - AluY SINE Alu -12 299 13 320 253 11 0 chr12 120288719 120288814 -23993675 + L1ME3A LINE L1 4575 4670 -1476 957 244 90 71 chr12 120290130 120290205 -23992284 + L1ME3A LINE L1 4656 4728 -1442 6630 74 33 2 chr12 120290205 120291075 -23991414 - MER11D LTR ERVK 0 897 1 957 244 90 71 chr12 120291075 120291341 -23991148 + L1ME3A LINE L1 4728 4987 -1183 2155 94 22 0 chr12 120291341 120291616 -23990873 + AluSx SINE Alu 1 281 -31 957 244 90 71 chr12 120291616 120291627 -23990862 + L1ME3A LINE L1 4987 4996 -1174 2000 149 0 32 chr12 120291627 120291942 -23990547 + AluJb SINE Alu 1 305 -7 957 244 90 71 chr12 120291942 120292869 -23989620 + L1ME3A LINE L1 4996 5951 -219 1531 187 19 32 chr12 120293151 120293467 -23989022 + AluJo SINE Alu 1 312 0 21 82 0 0 chr12 120293681 120293730 -23988759 + AT_rich Low_complexity Low_complexity 1 49 0 2021 208 13 13 chr12 120293872 120294329 -23988160 - MER65C LTR ERV1 -4 457 1 2137 108 0 11 chr12 120294415 120294694 -23987795 + AluSx SINE Alu 1 276 -36 203 49 98 24 chr12 120294696 120294737 -23987752 + GA-rich Low_complexity Low_complexity 5 48 0 2206 96 10 20 chr12 120295195 120295497 -23986992 + AluSg SINE Alu 1 299 -11 186 133 0 0 chr12 120295498 120295528 -23986961 + (TA)n Simple_repeat Simple_repeat 1 30 0 707 125 0 111 chr12 120296400 120296544 -23985945 - AluJb SINE Alu -6 306 179 680 173 93 120 chr12 120297135 120297196 -23985293 + MER20 DNA MER1_type 1 62 -157 981 165 13 13 chr12 120297196 120297354 -23985135 - FRAM SINE Alu -7 159 2 680 173 93 120 chr12 120297354 120297517 -23984972 + MER20 DNA MER1_type 62 219 0 624 282 51 43 chr12 120297752 120298007 -23984482 + MIR SINE MIR 1 257 -5 749 150 0 0 chr12 120298060 120298173 -23984316 + AluSg1 SINE Alu 1 113 -196 520 127 0 0 chr12 120298169 120298240 -23984249 + AluSp/q SINE Alu 180 250 -63 * 1332 150 0 26 chr12 120298240 120298473 -23984016 + AluSg/x SINE Alu 83 309 -1 574 246 89 11 chr12 120298479 120298670 -23983819 + MIR SINE MIR 57 262 0 2603 47 0 0 chr12 120299166 120299463 -23983026 + AluY SINE Alu 1 297 -14 1727 192 3 0 chr12 120299872 120300159 -23982330 - AluJo SINE Alu -24 288 1 2014 148 0 7 chr12 120300168 120300466 -23982023 - AluJo SINE Alu -16 296 1 496 189 0 54 chr12 120300479 120300536 -23981953 - U6 snRNA snRNA -2 105 55 1168 151 198 35 chr12 120300536 120300674 -23981815 - AluSg SINE Alu 0 300 186 215 61 30 0 chr12 120300674 120300707 -23981782 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1168 151 198 35 chr12 120300707 120300826 -23981663 - AluSg SINE Alu -114 186 1 496 189 0 54 chr12 120300826 120300879 -23981610 - U6 snRNA snRNA -52 55 1 491 202 0 0 chr12 120301459 120301543 -23980946 + AluJ/FLAM SINE Alu 1 84 -228 181 397 71 7 chr12 120302414 120302555 -23979934 - L2 LINE L2 -2 3270 3121 180 0 0 0 chr12 120302814 120302834 -23979655 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 884 238 0 0 chr12 120302838 120303010 -23979479 + FAM SINE Alu 1 172 -3 2132 127 7 0 chr12 120303013 120303320 -23979169 + AluSx SINE Alu 1 309 -3 276 130 0 0 chr12 120303931 120303977 -23978512 + FRAM/FAM SINE Alu 16 61 -105 1747 102 16 16 chr12 120353979 120354235 -23928254 - AluY SINE Alu -55 256 1 319 143 0 18 chr12 120354655 120354711 -23927778 - L1MB8 LINE L1 -5 6173 6119 1829 156 0 46 chr12 120354711 120355038 -23927451 + AluJo SINE Alu 1 312 0 849 158 0 0 chr12 120355217 120355350 -23927139 + AluJo SINE Alu 1 133 -179 2153 112 10 3 chr12 120355352 120355647 -23926842 + AluSx SINE Alu 1 297 -15 40 0 0 0 chr12 120355647 120355687 -23926802 + AT_rich Low_complexity Low_complexity 1 40 0 969 174 60 0 chr12 120355691 120355858 -23926631 + AluJo SINE Alu 118 294 -18 196 291 0 25 chr12 120356109 120356188 -23926301 + MIR SINE MIR 81 157 -105 2313 85 0 0 chr12 120356207 120356541 -23925948 + AluSg SINE Alu 1 334 0 2082 132 0 44 chr12 120356872 120357008 -23925481 + AluSx SINE Alu 1 141 -171 2230 79 32 4 chr12 120357008 120357287 -23925202 + AluSc SINE Alu 1 287 -22 2082 132 0 44 chr12 120357287 120357469 -23925020 + AluSx SINE Alu 141 305 -7 745 101 0 28 chr12 120357789 120357898 -23924591 - FRAM SINE Alu -9 167 62 2015 99 6 64 chr12 120357942 120358076 -23924413 + AluSq SINE Alu 1 141 -172 2342 75 0 60 chr12 120358076 120358407 -23924082 + AluY SINE Alu 1 311 0 2015 99 6 64 chr12 120358407 120358586 -23923903 + AluSq SINE Alu 141 296 -17 277 215 0 46 chr12 120358595 120358660 -23923829 + L2 LINE L2 3155 3216 -56 2222 121 0 3 chr12 120359111 120359409 -23923080 - AluSx SINE Alu -15 297 1 289 316 0 22 chr12 120360779 120360918 -23921571 + L1MC/D LINE L1 5406 5541 -701 22 0 0 0 chr12 120361063 120361085 -23921404 + AT_rich Low_complexity Low_complexity 1 22 0 442 158 188 10 chr12 120361164 120361265 -23921224 - L1MD2 LINE L1 0 6359 6241 2204 113 0 28 chr12 120361415 120361734 -23920755 + AluSx SINE Alu 1 310 -2 2332 91 0 3 chr12 120361749 120362046 -23920443 + AluSq SINE Alu 7 302 -11 1620 157 78 4 chr12 120362073 120362180 -23920309 + AluJo SINE Alu 1 99 -213 210 37 0 0 chr12 120362180 120362207 -23920282 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1620 157 78 4 chr12 120362207 120362380 -23920109 + AluJo SINE Alu 99 302 -10 266 336 90 40 chr12 120362423 120362646 -23919843 + HAL1 LINE L1 146 379 -2128 369 217 100 88 chr12 120362994 120363209 -23919280 + HAL1 LINE L1 2256 2476 -31 766 189 0 0 chr12 120363209 120363341 -23919148 - FLAM_A SINE Alu -1 132 1 369 217 100 88 chr12 120363341 120363374 -23919115 + HAL1 LINE L1 2476 2507 0 2000 134 13 19 chr12 120363521 120363828 -23918661 - AluSx SINE Alu -7 305 1 2155 99 7 0 chr12 120364053 120364363 -23918126 + AluSp SINE Alu 1 312 0 2177 110 0 35 chr12 120364372 120364515 -23917974 + AluSx SINE Alu 1 147 -165 2137 107 10 10 chr12 120364515 120364814 -23917675 + AluSq SINE Alu 1 299 -14 2177 110 0 35 chr12 120364814 120364989 -23917500 + AluSx SINE Alu 147 308 -4 256 288 213 31 chr12 120365651 120365970 -23916519 - L3 LINE CR1 -88 1489 1113 1409 108 14 27 chr12 120366304 120366526 -23915963 + AluSg/x SINE Alu 83 301 -9 519 206 9 0 chr12 120366586 120366703 -23915786 + L1M4 LINE L1 5184 5301 -850 1499 153 0 4 chr12 120366727 120366956 -23915533 + AluSx SINE Alu 1 228 -84 519 148 0 12 chr12 120367064 120367145 -23915344 - AluSg1 SINE Alu -228 81 2 1677 145 30 44 chr12 120367242 120367539 -23914950 + AluJb SINE Alu 1 293 -19 1759 181 3 7 chr12 120367557 120367850 -23914639 + AluJo SINE Alu 1 292 -20 854 73 0 0 chr12 120368636 120368746 -23913743 - HY1 scRNA scRNA -1 111 2 2470 103 0 0 chr12 120368859 120369171 -23913318 - AluSx SINE Alu 0 312 1 188 242 106 15 chr12 120369325 120369391 -23913098 - MIR3 SINE MIR -6 202 131 2471 71 0 0 chr12 120370138 120370434 -23912055 + AluSg1 SINE Alu 1 296 -13 2234 120 3 0 chr12 120370810 120371119 -23911370 + AluSg SINE Alu 1 310 0 845 149 0 0 chr12 120371733 120371854 -23910635 - FLAM_A SINE Alu -14 128 8 213 210 0 0 chr12 120371860 120371922 -23910567 + T-rich Low_complexity Low_complexity 1 62 0 2805 39 15 0 chr12 120371924 120372261 -23910228 - L1PA3 LINE L1 0 6155 5814 261 250 94 10 chr12 120372818 120372914 -23909575 - MIR SINE MIR -38 224 121 226 247 86 62 chr12 120373093 120373174 -23909315 + L1MEd LINE L1 425 507 -5612 1544 197 0 7 chr12 120373238 120373507 -23908982 - AluJb SINE Alu -45 267 1 2180 119 0 3 chr12 120373535 120373837 -23908652 + AluSx SINE Alu 1 301 -11 226 206 215 0 chr12 120373945 120374052 -23908437 + L1MEd LINE L1 711 840 -5279 1532 198 17 3 chr12 120374078 120374376 -23908113 + AluJb SINE Alu 2 303 -9 699 144 72 8 chr12 120374862 120374987 -23907502 + FLAM_C SINE Alu 1 133 0 288 229 156 67 chr12 120375259 120375438 -23907051 - L1ME4a LINE L1 -223 5898 5704 2211 100 16 13 chr12 120375481 120375662 -23906827 - AluSx SINE Alu 0 312 133 291 28 0 0 chr12 120375662 120375698 -23906791 + (TTG)n Simple_repeat Simple_repeat 1 36 0 2331 78 0 0 chr12 120375698 120375979 -23906510 - AluSx SINE Alu -31 281 1 2211 100 16 13 chr12 120375979 120376107 -23906382 - AluSx SINE Alu -178 134 1 330 286 97 62 chr12 120376392 120376762 -23905727 - L1ME4a LINE L1 -788 5358 4976 2352 79 0 10 chr12 120378057 120378360 -23904129 + AluY SINE Alu 1 300 -11 585 252 38 25 chr12 120378748 120378907 -23903582 + MIR SINE MIR 38 198 -64 779 156 7 30 chr12 120379243 120379378 -23903111 + FLAM_C SINE Alu 1 132 -1 269 211 72 72 chr12 120379469 120379621 -23902868 - L1ME LINE L1 -360 5761 5610 2170 134 7 0 chr12 120380085 120380392 -23902097 - AluSx SINE Alu -3 309 1 261 83 0 0 chr12 120381667 120381703 -23900786 + (TA)n Simple_repeat Simple_repeat 2 37 0 190 271 0 0 chr12 120382109 120382157 -23900332 + L3 LINE CR1 1508 1555 -22 27 0 0 0 chr12 120383262 120383289 -23899200 + AT_rich Low_complexity Low_complexity 1 27 0 345 334 81 7 chr12 120384356 120384609 -23897880 - L2 LINE L2 -333 2980 2714 2068 77 11 0 chr12 120384788 120385048 -23897441 - AluSg SINE Alu -12 298 36 2439 66 13 0 chr12 120385338 120385642 -23896847 - AluSq SINE Alu -5 308 1 709 156 0 16 chr12 120386038 120386160 -23896329 + FLAM_A SINE Alu 5 124 -9 21 36 0 0 chr12 120386759 120386787 -23895702 + AT_rich Low_complexity Low_complexity 1 28 0 394 271 60 15 chr12 120388552 120388685 -23893804 + MIR SINE MIR 9 147 -115 992 282 102 12 chr12 120388692 120388772 -23893717 - L2 LINE L2 -16 3297 3226 2369 87 0 13 chr12 120388772 120389082 -23893407 + AluSg SINE Alu 1 306 -4 992 282 102 12 chr12 120389082 120389423 -23893066 - L2 LINE L2 -87 3226 2838 615 266 76 46 chr12 120389633 120389858 -23892631 + MIR SINE MIR 34 262 0 2683 170 58 18 chr12 120391427 120391998 -23890491 - L1MB5 LINE L1 -1 6173 5580 1014 186 62 24 chr12 120392160 120392370 -23890119 + AluJo SINE Alu 1 218 -94 474 278 0 0 chr12 120392396 120392576 -23889913 + C-rich Low_complexity Low_complexity 1 180 0 243 256 0 0 chr12 120392612 120392702 -23889787 + C-rich Low_complexity Low_complexity 1 90 0 260 228 0 13 chr12 120392732 120392811 -23889678 + C-rich Low_complexity Low_complexity 1 78 0 447 139 156 49 chr12 120393177 120393299 -23889190 + AluJb SINE Alu 162 296 -16 338 301 157 30 chr12 120393302 120393564 -23888925 - L2 LINE L2 -33 3280 2986 218 345 9 26 chr12 120393679 120393792 -23888697 - L2 LINE L2 -488 2826 2716 2121 122 3 0 chr12 120393809 120394103 -23888386 + AluSx SINE Alu 1 295 -17 1547 150 4 8 chr12 120395907 120396153 -23886336 + AluJb SINE Alu 42 286 -26 450 0 0 0 chr12 120396153 120396203 -23886286 + (TATAA)n Simple_repeat Simple_repeat 2 51 0 2331 84 0 0 chr12 120396249 120396535 -23885954 + AluSq SINE Alu 1 286 -27 483 271 70 25 chr12 120396585 120396829 -23885660 + L1ME3 LINE L1 5908 6162 0 1579 232 64 7 chr12 120396945 120397117 -23885372 - L1ME1 LINE L1 -253 5913 5752 1844 164 3 3 chr12 120397117 120397410 -23885079 + AluSx SINE Alu 1 293 -19 1579 232 64 7 chr12 120397410 120397642 -23884847 - L1ME1 LINE L1 -414 5752 5486 2147 108 0 3 chr12 120398056 120398373 -23884116 - AluSx SINE Alu 0 316 1 1862 155 3 10 chr12 120398992 120399289 -23883200 + AluJo SINE Alu 1 295 -17 2188 107 0 20 chr12 120399297 120399595 -23882894 + AluSx SINE Alu 1 292 -20 367 164 21 0 chr12 120399595 120399667 -23882822 + AluY SINE Alu 133 193 -108 1469 57 11 0 chr12 120399769 120399981 -23882508 + AluY SINE Alu 103 316 0 1724 136 31 41 chr12 120400036 120400330 -23882159 + AluJo SINE Alu 1 291 -21 2201 94 20 7 chr12 120400486 120400785 -23881704 + AluY SINE Alu 1 303 -8 2007 137 0 0 chr12 120400789 120401082 -23881407 + AluSx SINE Alu 1 293 -19 1850 214 98 43 chr12 120401259 120401792 -23880697 + MER68 LTR ERV1 1 562 0 303 275 33 45 chr12 120401826 120402003 -23880486 - L1ME LINE L1 -448 5673 5495 239 252 95 20 chr12 120402210 120402357 -23880132 - L1ME LINE L1 -1038 5108 4951 2383 102 0 0 chr12 120402504 120402809 -23879680 - AluSq SINE Alu -8 305 1 297 51 26 0 chr12 120402834 120402873 -23879616 + FRAM SINE Alu 62 101 -65 25 0 0 0 chr12 120405319 120405344 -23877145 + AT_rich Low_complexity Low_complexity 1 25 0 1224 133 0 41 chr12 120405778 120405973 -23876516 - AluSg/x SINE Alu -1 311 125 1642 106 94 8 chr12 120406919 120407174 -23875315 - AluY SINE Alu -34 277 1 2035 129 11 0 chr12 120407250 120407575 -23874914 + AluSx SINE Alu 1 328 0 2164 117 0 3 chr12 120407575 120407873 -23874616 + AluSx SINE Alu 2 298 -14 222 118 0 0 chr12 120407969 120408003 -23874486 + (TA)n Simple_repeat Simple_repeat 2 35 0 216 0 0 0 chr12 120408003 120408027 -23874462 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1990 121 24 3 chr12 120408048 120408337 -23874152 + AluSx SINE Alu 1 295 -17 211 71 48 0 chr12 120408337 120408379 -23874110 + (TA)n Simple_repeat Simple_repeat 2 45 0 314 167 167 0 chr12 120408400 120408472 -23874017 - AluJ/FLAM SINE Alu -218 84 1 244 167 0 0 chr12 120408844 120408892 -23873597 + L1ME3A LINE L1 4637 4684 -1462 1363 151 39 17 chr12 120408898 120409130 -23873359 + AluJo SINE Alu 1 237 -75 518 236 55 24 chr12 120409152 120409317 -23873172 + L1ME3A LINE L1 4745 4914 -1232 1866 165 0 19 chr12 120409331 120409647 -23872842 - AluJo SINE Alu -2 310 1 180 0 0 0 chr12 120410185 120410205 -23872284 + (TAA)n Simple_repeat Simple_repeat 2 21 0 726 186 50 68 chr12 120410533 120410694 -23871795 + AluJb SINE Alu 147 304 -8 2439 79 0 0 chr12 120410700 120410992 -23871497 + AluSc SINE Alu 1 292 -17 907 224 82 74 chr12 120411074 120411427 -23871062 + L1ME3A LINE L1 5595 5950 -220 1984 150 3 0 chr12 120411427 120411727 -23870762 - AluSx SINE Alu -11 301 1 1036 181 8 79 chr12 120411899 120412164 -23870325 - AluJo SINE Alu -66 246 1 260 260 179 40 chr12 120412164 120412387 -23870102 - L1ME4a LINE L1 -123 5998 5745 218 233 26 86 chr12 120412628 120412744 -23869745 + L3 LINE CR1 1468 1576 -1 180 0 0 0 chr12 120413735 120413755 -23868734 + (T)n Simple_repeat Simple_repeat 1 20 0 1197 203 21 16 chr12 120415343 120415585 -23866904 - AluJb SINE Alu -69 243 1 2431 96 0 3 chr12 120415604 120415916 -23866573 - AluSx SINE Alu -1 311 1 1782 149 13 26 chr12 120416610 120416918 -23865571 + AluJb SINE Alu 1 304 -8 1334 173 114 7 chr12 120416921 120417192 -23865297 + AluSx SINE Alu 1 300 -12 2283 112 0 3 chr12 120417194 120417499 -23864990 + AluSx SINE Alu 1 304 -8 1012 136 11 43 chr12 120417499 120417683 -23864806 + AluSg/x SINE Alu 134 311 -1 2075 147 0 0 chr12 120418089 120418396 -23864093 - AluSx SINE Alu -5 307 1 1423 171 0 23 chr12 120418406 120418711 -23863778 - AluSx SINE Alu -14 298 1 2329 90 13 0 chr12 120420017 120420318 -23862171 - AluSp SINE Alu -8 305 1 2257 118 3 0 chr12 120420529 120420834 -23861655 - AluSx SINE Alu -6 306 1 270 0 0 0 chr12 120420944 120420974 -23861515 + (TG)n Simple_repeat Simple_repeat 2 31 0 216 0 0 0 chr12 120420973 120420997 -23861492 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 2218 101 10 3 chr12 120421014 120421311 -23861178 - AluSg SINE Alu -11 299 1 2236 114 0 16 chr12 120421626 120421806 -23860683 - AluSx SINE Alu -1 311 137 2251 109 0 0 chr12 120421806 120422099 -23860390 - AluSg SINE Alu -17 293 1 2236 114 0 16 chr12 120422099 120422234 -23860255 - AluSx SINE Alu -175 137 1 2261 116 0 0 chr12 120422235 120422537 -23859952 - AluSx SINE Alu -10 302 1 333 133 33 17 chr12 120423153 120423213 -23859276 + AluSg/x SINE Alu 108 168 -134 401 111 14 56 chr12 120423320 120423392 -23859097 - AluS SINE Alu -242 70 2 1356 165 4 9 chr12 120423393 120423623 -23858866 - L1MC4a LINE L1 -339 7469 7241 2056 107 55 0 chr12 120423842 120424132 -23858357 + AluSx SINE Alu 1 306 -6 1370 156 24 133 chr12 120424145 120424484 -23858005 + AluJb SINE Alu 1 302 0 703 62 0 0 chr12 120424397 120424493 -23857996 + AluY SINE Alu 215 310 -1 334 183 0 61 chr12 120424517 120424599 -23857890 + L1ME3 LINE L1 6064 6140 -22 25 0 0 0 chr12 120424620 120424645 -23857844 + AT_rich Low_complexity Low_complexity 1 25 0 1717 185 10 7 chr12 120424665 120424968 -23857521 + AluJb SINE Alu 4 307 -5 2292 108 10 0 chr12 120424972 120425279 -23857210 + AluSx SINE Alu 1 310 -2 2311 107 3 0 chr12 120425280 120425580 -23856909 + AluSq SINE Alu 2 302 -11 1852 139 9 49 chr12 120425759 120426083 -23856406 + AluJo SINE Alu 1 311 -1 1723 139 43 27 chr12 120426124 120426425 -23856064 - AluSx SINE Alu -6 306 1 1879 119 43 50 chr12 120427749 120428052 -23854437 - AluSx SINE Alu -11 301 1 1105 129 0 7 chr12 120428078 120428233 -23854256 - FRAM SINE Alu -12 154 1 1300 211 51 97 chr12 120428241 120428676 -23853813 + L1MD2 LINE L1 5928 6342 -17 612 126 68 0 chr12 120429135 120429238 -23853251 + HY1 scRNA scRNA 3 112 0 1746 162 22 0 chr12 120429254 120429532 -23852957 + AluSx SINE Alu 1 284 -28 186 43 0 0 chr12 120429532 120429555 -23852934 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1983 147 0 22 chr12 120429567 120429886 -23852603 + AluSx SINE Alu 1 312 0 1099 170 42 21 chr12 120429886 120430118 -23852371 + L1MB8 LINE L1 5818 6057 -121 1328 284 12 111 chr12 120430125 120430459 -23852030 + AluSq SINE Alu 3 303 0 2230 128 0 3 chr12 120431289 120431586 -23850903 - AluSx SINE Alu -16 296 1 268 206 0 44 chr12 120432302 120432370 -23850119 + AluS SINE Alu 1 65 -243 306 87 0 0 chr12 120432517 120432563 -23849926 + (TA)n Simple_repeat Simple_repeat 2 47 0 1180 231 116 97 chr12 120432596 120432982 -23849507 - L1MC4 LINE L1 -865 6943 6566 2018 134 28 0 chr12 120432982 120433272 -23849217 - AluSx SINE Alu -14 298 1 1180 231 116 97 chr12 120433272 120433706 -23848783 - L1MC4 LINE L1 -1242 6566 6140 1752 179 7 26 chr12 120433853 120434161 -23848328 + AluJo SINE Alu 1 302 -10 2324 104 0 0 chr12 120434423 120434720 -23847769 + AluSg SINE Alu 1 297 -13 2289 87 0 13 chr12 120434961 120435260 -23847229 + AluY SINE Alu 1 295 -16 672 241 0 0 chr12 120435284 120435417 -23847072 - FLAM_A SINE Alu 0 133 1 196 270 14 14 chr12 120436016 120436090 -23846399 - MIR SINE MIR -2 260 187 * 267 253 101 24 chr12 120436089 120436237 -23846252 + MIR SINE MIR 5 245 -17 1046 164 174 0 chr12 120436237 120436438 -23846051 + MER46A DNA MER2_type 1 236 0 267 253 101 24 chr12 120436438 120436455 -23846034 + MIR SINE MIR 245 259 -3 2361 93 0 3 chr12 120437452 120437752 -23844737 - AluSg SINE Alu -11 299 1 1955 58 0 0 chr12 120438007 120438230 -23844259 + AluSq SINE Alu 1 223 -90 21 0 0 0 chr12 120438230 120438251 -23844238 + AT_rich Low_complexity Low_complexity 1 21 0 2538 68 7 0 chr12 120438253 120438560 -23843929 + AluSq SINE Alu 1 309 -4 1906 137 7 4 chr12 120438580 120438857 -23843632 + AluSx SINE Alu 25 302 -10 225 238 119 40 chr12 120440091 120440217 -23842272 + L1P5 LINE L1 5507 5642 -509 28 29 0 0 chr12 120442183 120442218 -23840271 + AT_rich Low_complexity Low_complexity 1 35 0 31 0 0 0 chr12 120442229 120442260 -23840229 + AT_rich Low_complexity Low_complexity 1 31 0 1841 143 0 68 chr12 120442269 120442590 -23839899 + AluJb SINE Alu 1 299 -13 2288 107 0 3 chr12 120442599 120442907 -23839582 + AluSc SINE Alu 1 307 -2 895 222 55 25 chr12 120442912 120443039 -23839450 - L1MC4a LINE L1 -71 7924 7802 2006 166 3 3 chr12 120443039 120443347 -23839142 + AluJb SINE Alu 1 308 -4 895 222 55 25 chr12 120443347 120443490 -23838999 - L1MC4a LINE L1 -193 7802 7467 637 176 80 0 chr12 120443490 120443615 -23838874 - AluSg/x SINE Alu -10 299 165 1693 148 4 8 chr12 120443720 120443983 -23838506 - AluSp SINE Alu -51 262 1 2290 110 10 0 chr12 120444056 120444364 -23838125 - AluSx SINE Alu -1 311 1 22832 118 19 85 chr12 120447391 120447403 -23835086 - L1P LINE L1 -1885 4261 4250 2143 112 3 0 chr12 120447403 120447689 -23834800 - AluSg SINE Alu -23 287 1 22832 118 19 85 chr12 120447689 120448180 -23834309 - L1P LINE L1 -1896 4250 3728 2425 60 27 7 chr12 120448180 120448478 -23834011 - AluY SINE Alu -7 304 1 22832 118 19 85 chr12 120448478 120452523 -23829966 - L1P LINE L1 -2418 3728 12 22 0 0 0 chr12 120453309 120453331 -23829158 + AT_rich Low_complexity Low_complexity 1 22 0 405 267 72 114 chr12 120457271 120457503 -23824986 + MLT1K LTR MaLR 145 385 -203 2348 95 0 3 chr12 120457503 120457799 -23824690 - AluSq SINE Alu -16 297 3 2322 75 24 0 chr12 120457804 120458096 -23824393 - AluSg1 SINE Alu -10 299 1 405 267 72 114 chr12 120458096 120458229 -23824260 + MLT1K LTR MaLR 389 496 -92 2643 57 0 0 chr12 120458229 120458530 -23823959 - AluY SINE Alu -10 301 1 405 267 72 114 chr12 120458530 120458614 -23823875 + MLT1K LTR MaLR 496 582 -6 265 266 37 28 chr12 120459432 120459541 -23822948 + MIR SINE MIR 22 131 -77 246 293 48 48 chr12 120460950 120461097 -23821392 + MIR SINE MIR 46 192 -70 224 306 126 36 chr12 120461554 120461665 -23820824 + MIR SINE MIR 33 153 -55 309 243 66 29 chr12 120462867 120463003 -23819486 + MLT1J LTR MaLR 1 141 -370 335 189 245 0 chr12 120464440 120464546 -23817943 - L1MD2 LINE L1 -21 6338 6207 2445 75 3 0 chr12 120464789 120465081 -23817408 - AluSp SINE Alu -20 293 1 227 207 58 81 chr12 120465371 120465458 -23817031 + L2 LINE L2 3185 3269 -3 1588 136 3 92 chr12 120466074 120466258 -23816231 - AluJo SINE Alu -17 295 145 2493 76 0 16 chr12 120466258 120466572 -23815917 - AluY SINE Alu -2 309 1 1588 136 3 92 chr12 120466572 120466682 -23815807 - AluJo SINE Alu -167 145 27 2270 99 30 3 chr12 120466844 120467148 -23815341 - AluSp SINE Alu -1 312 1 2027 126 42 3 chr12 120467148 120467433 -23815056 - AluSq SINE Alu -16 297 1 2226 81 57 0 chr12 120467443 120467726 -23814763 - AluSg SINE Alu -11 299 1 1902 164 41 39 chr12 120468013 120468402 -23814087 + MLT1B LTR MaLR 1 390 0 812 217 28 42 chr12 120469842 120470054 -23812435 - MER3 DNA MER1_type 0 209 1 284 222 28 118 chr12 120470226 120470257 -23812232 + L1MC4a LINE L1 5779 5811 -1997 2564 60 0 3 chr12 120470257 120470559 -23811930 - AluY SINE Alu -10 301 1 284 222 28 118 chr12 120470559 120470671 -23811818 + L1MC4a LINE L1 5811 5909 -1899 1484 123 33 53 chr12 120470951 120471194 -23811295 - AluJb SINE Alu -11 301 64 1538 152 42 11 chr12 120471429 120471693 -23810796 + AluJb SINE Alu 3 274 -38 233 204 148 46 chr12 120472398 120472506 -23809983 + MLT1J2 LTR MaLR 18 136 -314 1930 141 50 0 chr12 120473144 120473441 -23809048 + AluSx SINE Alu 1 312 0 528 240 0 23 chr12 120473696 120473825 -23808664 - MER96B DNA MER1_type? 0 417 292 633 64 0 75 chr12 120473862 120473956 -23808533 + AluS SINE Alu 5 91 -221 857 98 0 0 chr12 120473961 120474073 -23808416 + AluSg/x SINE Alu 196 307 -3 1061 175 142 4 chr12 120474075 120474321 -23808168 - MER96B DNA MER1_type? -137 280 1 1921 136 47 0 chr12 120474359 120474638 -23807851 - AluJo SINE Alu -20 292 1 2410 88 0 3 chr12 120474688 120474982 -23807507 + AluSx SINE Alu 1 293 -19 814 163 0 8 chr12 120475068 120475197 -23807292 + AluJo SINE Alu 7 134 -178 198 220 0 0 chr12 120475222 120475281 -23807208 + A-rich Low_complexity Low_complexity 1 59 0 358 341 111 4 chr12 120475303 120475529 -23806960 + L3b LINE CR1 1129 1378 -205 304 155 299 21 chr12 120475813 120475910 -23806579 + L1MC2 LINE L1 6206 6329 -15 24 53 0 0 chr12 120478110 120478148 -23804341 + GC_rich Low_complexity Low_complexity 1 38 0 414 304 104 46 chr12 120478386 120478626 -23803863 - MIR SINE MIR 0 262 9 1699 124 42 55 chr12 120478861 120479168 -23803321 - AluJo SINE Alu -9 303 1 2083 102 0 43 chr12 120479194 120479517 -23802972 - AluSg1 SINE Alu 0 309 1 1924 144 0 13 chr12 120479541 120479846 -23802643 - AluSx SINE Alu -11 301 1 2252 78 14 0 chr12 120479858 120480154 -23802335 - AluSp SINE Alu -13 300 1 313 245 11 43 chr12 120480169 120480263 -23802226 - MER113 DNA MER1_type? -222 299 209 803 130 0 0 chr12 120480300 120480415 -23802074 - FLAM_C SINE Alu -27 116 2 510 141 12 164 chr12 120480416 120480496 -23801993 - MER113 DNA MER1_type? -304 217 126 2380 81 0 0 chr12 120480496 120480804 -23801685 - AluY SINE Alu -3 308 1 510 141 12 164 chr12 120480804 120480883 -23801606 - MER113 DNA MER1_type? -395 126 109 1986 132 0 7 chr12 120480883 120481179 -23801310 + AluSx SINE Alu 1 294 -18 510 141 12 164 chr12 120481179 120481274 -23801215 - MER113 DNA MER1_type? -412 109 1 578 182 99 16 chr12 120481916 120482037 -23800452 - FLAM_C SINE Alu -11 132 2 426 236 104 124 chr12 120482059 120482149 -23800340 + MER102b DNA MER1_type 84 174 -1254 2425 68 3 0 chr12 120482149 120482458 -23800031 + AluY SINE Alu 1 310 -1 426 236 104 124 chr12 120482458 120482617 -23799872 + MER102b DNA MER1_type 174 328 -13 2155 88 7 7 chr12 120482635 120482932 -23799557 - AluSq SINE Alu -16 297 1 227 278 42 90 chr12 120482961 120483173 -23799316 - L1MC4 LINE L1 -5 8037 7836 236 242 16 0 chr12 120483212 120483274 -23799215 - L1ME2 LINE L1 -10 6154 6092 2545 166 56 6 chr12 120488163 120488664 -23793825 + L1MB8 LINE L1 5653 6178 0 1532 154 81 0 chr12 120488758 120489031 -23793458 + AluJo SINE Alu 1 295 -17 1606 138 18 89 chr12 120489467 120489677 -23792812 - AluJo SINE Alu -8 304 124 2150 111 0 0 chr12 120489677 120489974 -23792515 - AluSx SINE Alu -15 297 1 1606 138 18 89 chr12 120489974 120490090 -23792399 - AluJo SINE Alu -188 124 1 824 175 13 26 chr12 120490213 120490367 -23792122 - FRAM SINE Alu -27 149 1 186 171 68 125 chr12 120490729 120490791 -23791698 - L2 LINE L2 -9 3304 3247 1549 117 5 0 chr12 120490791 120491013 -23791476 - AluSx SINE Alu -89 223 1 186 171 68 125 chr12 120491013 120491038 -23791451 - L2 LINE L2 -66 3247 3222 229 286 36 12 chr12 120491127 120491211 -23791278 - L2 LINE L2 -254 3059 2974 213 283 44 44 chr12 120491320 120491433 -23791056 - L2 LINE L2 -564 2750 2638 196 197 0 197 chr12 120492251 120492368 -23790121 - L2 LINE L2 -1000 2314 2221 209 315 76 0 chr12 120492558 120492650 -23789839 + L2 LINE L2 3160 3258 -14 203 272 48 68 chr12 120492799 120492902 -23789587 + L2 LINE L2 2221 2321 -993 2010 131 0 0 chr12 120493034 120493332 -23789157 - AluSx SINE Alu -14 298 1 441 95 0 0 chr12 120493728 120493791 -23788698 + (TG)n Simple_repeat Simple_repeat 2 64 0 1925 140 7 0 chr12 120493977 120494270 -23788219 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 120494423 120494451 -23788038 + AT_rich Low_complexity Low_complexity 1 28 0 2053 135 0 0 chr12 120495088 120495384 -23787105 - AluSx SINE Alu -16 296 1 305 277 0 36 chr12 120495741 120495824 -23786665 - MIR3 SINE MIR -48 160 81 1815 139 34 0 chr12 120495824 120496119 -23786370 - AluJb SINE Alu -7 305 1 229 0 54 27 chr12 120496737 120496774 -23785715 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 278 150 17 0 chr12 120496862 120496922 -23785567 + L1MC/D LINE L1 5273 5333 -813 1362 109 0 0 chr12 120496922 120497114 -23785375 - AluSg/x SINE Alu -13 297 106 2136 116 0 0 chr12 120497729 120498031 -23784458 + AluSx SINE Alu 1 302 -10 1975 107 7 0 chr12 120498032 120498302 -23784187 + AluSx SINE Alu 1 272 -40 232 211 79 13 chr12 120498303 120498379 -23784110 + L1MC/D LINE L1 5704 5784 -2024 2114 116 3 10 chr12 120498462 120498772 -23783717 - AluSx SINE Alu -4 308 1 1672 167 10 7 chr12 120499092 120499391 -23783098 + AluJo SINE Alu 1 300 -12 2336 80 0 0 chr12 120499412 120499714 -23782775 - AluY SINE Alu -9 302 1 447 68 0 0 chr12 120499977 120500036 -23782453 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1902 113 7 7 chr12 120500036 120500320 -23782169 - AluSx SINE Alu -28 284 1 367 230 111 31 chr12 120500342 120500481 -23782008 - MIR SINE MIR -8 200 52 201 156 0 0 chr12 120501382 120501414 -23781075 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1736 167 10 3 chr12 120501772 120502078 -23780411 - AluJo SINE Alu -4 308 1 2208 87 7 3 chr12 120502206 120502504 -23779985 - AluSp SINE Alu -14 299 1 697 301 89 80 chr12 120503318 120503803 -23778686 + L2 LINE L2 2825 3313 0 225 369 0 0 chr12 120503863 120503928 -23778561 - L2 LINE L2 -461 2853 2789 1142 145 0 0 chr12 120503948 120504114 -23778375 + AluSg SINE Alu 1 166 -144 790 183 14 7 chr12 120504114 120504256 -23778233 - FAM SINE Alu -42 143 1 1763 229 45 92 chr12 120504258 120504900 -23777589 - L2 LINE L2 -513 2801 2190 2041 113 0 0 chr12 120505667 120505974 -23776515 - AluSx SINE Alu 0 307 1 2228 77 0 0 chr12 120506283 120506570 -23775919 + AluY SINE Alu 1 287 -24 299 25 25 0 chr12 120506570 120506610 -23775879 + (TA)n Simple_repeat Simple_repeat 1 41 0 2013 157 0 0 chr12 120506618 120506924 -23775565 + AluJo SINE Alu 1 306 -6 389 248 50 16 chr12 120507257 120507378 -23775111 + L2 LINE L2 3147 3271 -1 1991 143 3 0 chr12 120507750 120508057 -23774432 + AluSx SINE Alu 1 308 -4 1925 145 24 0 chr12 120508514 120508811 -23773678 - AluJb SINE Alu -8 304 1 477 50 0 0 chr12 120510176 120510236 -23772253 + (CA)n Simple_repeat Simple_repeat 1 60 0 1905 156 0 3 chr12 120510237 120510532 -23771957 - AluJo SINE Alu -18 294 1 255 154 39 0 chr12 120510863 120510915 -23771574 - Alu SINE Alu 0 302 249 1027 95 0 0 chr12 120510915 120511052 -23771437 + AluSg/x SINE Alu 160 296 -14 294 143 0 0 chr12 120511052 120511101 -23771388 - L1MB8 LINE L1 -27 6151 6103 298 64 0 0 chr12 120511108 120511155 -23771334 - L1MA3 LINE L1 0 6305 6259 * 2217 157 22 53 chr12 120511154 120511607 -23770882 - L1MB7 LINE L1 -67 6117 5679 1953 131 7 0 chr12 120511622 120511912 -23770577 - AluSx SINE Alu -20 292 1 2343 81 0 0 chr12 120512481 120512778 -23769711 - AluSx SINE Alu -15 297 1 430 264 62 16 chr12 120512927 120513056 -23769433 + MIR SINE MIR 128 262 0 262 270 67 0 chr12 120513116 120513205 -23769284 - L2 LINE L2 -16 3297 3203 200 135 27 0 chr12 120513218 120513255 -23769234 + (CA)n Simple_repeat Simple_repeat 1 38 0 1931 153 0 0 chr12 120513393 120513700 -23768789 + AluSx SINE Alu 1 307 -5 822 138 0 0 chr12 120513717 120513833 -23768656 + AluJo/FLAM SINE Alu 7 122 -190 1318 134 0 14 chr12 120513833 120514042 -23768447 - AluJb SINE Alu -17 295 90 1629 170 38 3 chr12 120514128 120514417 -23768072 - AluJb SINE Alu -13 299 1 1584 137 57 63 chr12 120514520 120514621 -23767868 + AluJb SINE Alu 3 103 -199 2187 111 0 13 chr12 120514621 120514800 -23767689 - AluSx SINE Alu 0 312 137 2249 94 3 0 chr12 120514800 120515099 -23767390 - AluSg SINE Alu -10 300 1 2187 111 0 13 chr12 120515099 120515235 -23767254 - AluSx SINE Alu -175 137 1 1584 137 57 63 chr12 120515235 120515265 -23767224 + AluJb SINE Alu 103 132 -170 1963 148 0 0 chr12 120515265 120515563 -23766926 + AluSx SINE Alu 3 300 -12 1584 137 57 63 chr12 120515563 120515729 -23766760 + AluJb SINE Alu 132 299 -3 2051 139 0 0 chr12 120516289 120516598 -23765891 - AluSx SINE Alu -3 309 1 37 0 0 0 chr12 120516777 120516814 -23765675 + AT_rich Low_complexity Low_complexity 1 37 0 2455 50 0 3 chr12 120517144 120517444 -23765045 - AluY SINE Alu -12 299 1 319 204 109 122 chr12 120518034 120518255 -23764234 + L1M3c LINE L1 1256 1473 -4668 1485 189 106 66 chr12 120518360 120518684 -23763805 + L1MC5 LINE L1 7302 7661 -300 824 157 0 0 chr12 120518684 120518805 -23763684 - FLAM_A SINE Alu -12 121 1 1485 189 106 66 chr12 120518805 120519067 -23763422 + L1MC5 LINE L1 7661 7911 -50 384 71 0 0 chr12 120519068 120519124 -23763365 + (CA)n Simple_repeat Simple_repeat 1 56 0 2089 115 0 0 chr12 120520056 120520351 -23762138 + AluSx SINE Alu 1 295 -17 868 96 0 0 chr12 120520510 120520635 -23761854 - AluSp/q SINE Alu -6 307 183 1978 134 0 0 chr12 120521923 120522242 -23760247 + AluSx SINE Alu 1 319 0 615 270 34 29 chr12 120524850 120525006 -23757483 - L1MC4a LINE L1 -1918 5890 5731 2069 116 7 3 chr12 120525006 120525308 -23757181 - AluSx SINE Alu -9 303 1 615 270 34 29 chr12 120525308 120525355 -23757134 - L1MC4a LINE L1 -2077 5731 5686 22 0 0 0 chr12 120525499 120525521 -23756968 + AT_rich Low_complexity Low_complexity 1 22 0 2013 137 0 3 chr12 120526093 120526399 -23756090 - AluJo SINE Alu -5 307 3 229 67 0 0 chr12 120526683 120526713 -23755776 - Alu SINE Alu -270 30 1 265 267 46 51 chr12 120526777 120526910 -23755579 - L1MC4a LINE L1 -2281 5527 5373 22 0 0 0 chr12 120526910 120526932 -23755557 + AT_rich Low_complexity Low_complexity 1 22 0 265 267 46 51 chr12 120526932 120526994 -23755495 - L1MC4a LINE L1 -2435 5373 5312 294 301 6 58 chr12 120527783 120527939 -23754550 + MIR SINE MIR 113 260 -2 1764 88 52 0 chr12 120528990 120529239 -23753250 - LTR29 LTR ERV1 -66 556 295 239 286 286 0 chr12 120530388 120530559 -23751930 + L2 LINE L2 2891 3110 -162 2389 81 3 0 chr12 120530636 120530932 -23751557 - AluSp SINE Alu -16 297 1 1057 144 20 0 chr12 120531102 120531255 -23751234 - AluJb SINE Alu -20 292 137 1101 165 21 74 chr12 120531353 120531596 -23750893 + AluJo SINE Alu 38 267 -45 33 0 0 0 chr12 120531605 120531638 -23750851 + AT_rich Low_complexity Low_complexity 1 33 0 191 274 32 32 chr12 120533002 120533064 -23749425 - L3 LINE CR1 -12 1565 1504 443 222 97 28 chr12 120533113 120533257 -23749232 + MER103 DNA DNA 12 165 -1 2056 151 0 3 chr12 120533318 120533629 -23748860 - AluJo SINE Alu -2 310 1 327 211 11 21 chr12 120533816 120533911 -23748578 + L1ME4a LINE L1 5678 5771 -350 263 260 29 48 chr12 120533976 120534080 -23748409 + L1ME4a LINE L1 5986 6087 -34 1828 154 7 7 chr12 120534336 120534634 -23747855 - AluJo SINE Alu -10 302 5 312 98 0 0 chr12 120534699 120534740 -23747749 + FRAM/FAM SINE Alu 21 61 -114 1971 152 3 3 chr12 120535209 120535506 -23746983 + AluJb SINE Alu 1 297 -15 2184 123 0 3 chr12 120535506 120535807 -23746682 + AluSx SINE Alu 1 300 -12 33 43 0 0 chr12 120537066 120537113 -23745376 + AT_rich Low_complexity Low_complexity 1 47 0 2064 132 3 22 chr12 120537231 120537549 -23744940 - AluSx SINE Alu 0 312 1 1891 153 3 3 chr12 120537887 120538181 -23744308 - AluJo SINE Alu -18 294 1 26 0 0 0 chr12 120538223 120538249 -23744240 + AT_rich Low_complexity Low_complexity 1 26 0 2239 107 0 0 chr12 120538728 120539017 -23743472 + AluSx SINE Alu 1 289 -23 315 0 0 0 chr12 120539020 120539055 -23743434 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 2160 125 0 3 chr12 120539233 120539538 -23742951 + AluSx SINE Alu 4 307 -5 261 0 0 0 chr12 120540856 120540885 -23741604 + (CA)n Simple_repeat Simple_repeat 2 30 0 1826 162 0 19 chr12 120541451 120541765 -23740724 - AluJo SINE Alu -4 308 1 2086 108 4 0 chr12 120541971 120542248 -23740241 + AluSx SINE Alu 21 298 -14 695 236 130 0 chr12 120542691 120542852 -23739637 - MER5A DNA MER1_type -6 183 2 614 227 25 0 chr12 120544405 120544524 -23737965 - L2 LINE L2 -4 3309 3188 2281 112 3 6 chr12 120544637 120544950 -23737539 - AluSx SINE Alu 0 312 1 2034 152 0 13 chr12 120545689 120545992 -23736497 - AluJb SINE Alu -13 299 1 2180 133 0 0 chr12 120546002 120546303 -23736186 - AluSx SINE Alu -11 301 1 192 376 43 0 chr12 120548306 120548399 -23734090 - L3b LINE CR1 -137 1446 1350 244 341 126 6 chr12 120548439 120548606 -23733883 - L3b LINE CR1 -226 1357 1171 949 174 56 15 chr12 120550058 120550254 -23732235 - MER3 DNA MER1_type -5 204 1 392 181 32 21 chr12 120550276 120550370 -23732119 - L1MA10 LINE L1 -1 6333 6239 1738 221 100 27 chr12 120550373 120550786 -23731703 - L1ME1 LINE L1 -137 6029 5575 2319 106 0 3 chr12 120550786 120551087 -23731402 + AluSg SINE Alu 1 300 -10 1738 221 100 27 chr12 120551087 120551152 -23731337 - L1ME1 LINE L1 -591 5575 5516 916 144 14 7 chr12 120552396 120552542 -23729947 - FRAM SINE Alu -9 167 21 1433 134 37 8 chr12 120552826 120553072 -23729417 - L1MB3 LINE L1 0 6183 5931 1514 69 0 54 chr12 120553458 120553662 -23728827 - AluY SINE Alu -15 296 104 2330 101 0 16 chr12 120555107 120555424 -23727065 + AluSx SINE Alu 1 312 0 2044 125 0 3 chr12 120555506 120555795 -23726694 - AluSx SINE Alu -24 288 1 334 270 117 15 chr12 120555899 120556036 -23726453 - MIR SINE MIR -12 250 100 276 30 0 0 chr12 120556586 120556603 -23725886 + (CA)n Simple_repeat Simple_repeat 1 50 0 276 30 0 0 chr12 120556603 120556636 -23725853 + (CA)n Simple_repeat Simple_repeat 2 34 0 2294 91 0 0 chr12 120557658 120557943 -23724546 - AluSx SINE Alu -27 285 1 1868 147 3 7 chr12 120559360 120559660 -23722829 - AluJo SINE Alu -13 299 1 22 35 0 0 chr12 120559916 120559945 -23722544 + AT_rich Low_complexity Low_complexity 1 29 0 787 110 0 16 chr12 120559956 120560083 -23722406 + 7SK RNA RNA 1 125 -68 498 88 0 0 chr12 120560119 120560187 -23722302 + 7SK RNA RNA 121 188 -5 852 155 0 0 chr12 120560252 120560368 -23722121 - FLAM_C SINE Alu -17 116 1 1427 173 17 51 chr12 120560707 120561002 -23721487 - AluJb SINE Alu -27 285 1 717 173 38 0 chr12 120561016 120561149 -23721340 - L1MA10 LINE L1 -17 6317 6180 2337 105 0 0 chr12 120561352 120561656 -23720833 + AluSq SINE Alu 1 304 -9 2679 26 3 0 chr12 120561747 120562051 -23720438 - AluY SINE Alu -6 305 1 467 231 261 5 chr12 120562087 120562282 -23720207 - MIR SINE MIR -15 247 3 207 0 0 0 chr12 120562336 120562359 -23720130 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 631 291 136 5 chr12 120563538 120563758 -23718731 - MIR SINE MIR -1 261 13 344 200 170 20 chr12 120563826 120563926 -23718563 - L2 LINE L2 -961 2353 2239 361 245 0 0 chr12 120563952 120564046 -23718443 - L1MB7 LINE L1 0 6184 6091 401 189 14 0 chr12 120564161 120564235 -23718254 + MLT1F1 LTR MaLR 20 94 -473 1169 215 22 26 chr12 120564235 120564505 -23717984 + L1MD3 LINE L1 7392 7660 -335 745 217 65 102 chr12 120564509 120564832 -23717657 - L1M4 LINE L1 -5090 1765 1455 2029 102 3 34 chr12 120564900 120565228 -23717261 - AluSq SINE Alu 0 319 1 243 226 107 148 chr12 120565299 120565542 -23716947 - L1M4 LINE L1 -5670 1185 953 328 328 114 30 chr12 120565640 120565841 -23716648 - L1M4 LINE L1 -6012 847 630 436 272 76 37 chr12 120565853 120566067 -23716422 - L1M4 LINE L1 -6316 539 36 27 0 0 0 chr12 120567269 120567296 -23715193 + AT_rich Low_complexity Low_complexity 1 27 0 1884 149 3 3 chr12 120567302 120567612 -23714877 + AluJo SINE Alu 1 310 0 660 258 113 0 chr12 120568299 120568485 -23714004 + MIR SINE MIR 1 207 -55 3392 151 16 18 chr12 120569296 120569316 -23713173 + L1MB7 LINE L1 5288 5307 -877 2338 85 7 0 chr12 120569316 120569622 -23712867 - AluSc SINE Alu -1 308 1 3392 151 16 18 chr12 120569622 120570211 -23712278 + L1MB7 LINE L1 5307 5896 -288 430 204 0 0 chr12 120570215 120570308 -23712181 + THE1C LTR MaLR 201 293 -82 197 139 0 28 chr12 120570362 120570398 -23712091 + MIR SINE MIR 91 125 -83 232 302 103 9 chr12 120570700 120570816 -23711673 - MIR SINE MIR -79 183 57 1489 163 82 4 chr12 120570971 120571241 -23711248 + L1MB7 LINE L1 5880 6170 -14 2178 116 0 0 chr12 120571489 120571783 -23710706 + AluSx SINE Alu 1 294 -18 990 150 7 0 chr12 120572633 120572786 -23709703 - MER46A DNA MER2_type -1 235 82 517 169 84 6 chr12 120572782 120572912 -23709577 - MER46A DNA MER2_type -141 95 2 * 2145 121 0 10 chr12 120573663 120573969 -23708520 - AluSq SINE Alu -10 303 1 473 141 0 64 chr12 120574085 120574163 -23708326 + FLAM_A SINE Alu 55 127 -15 245 94 0 0 chr12 120574209 120574241 -23708248 - U6 snRNA snRNA -75 32 1 180 0 0 0 chr12 120574418 120574438 -23708051 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 2644 46 0 0 chr12 120574980 120575286 -23707203 + AluY SINE Alu 1 306 -5 631 251 82 8 chr12 120575296 120575539 -23706950 + L1MC4a LINE L1 5876 6136 -1672 237 132 0 0 chr12 120576819 120576857 -23705632 + (T)n Simple_repeat Simple_repeat 1 38 0 1979 156 0 22 chr12 120577701 120578016 -23704473 - AluJb SINE Alu -4 308 1 629 313 73 62 chr12 120578190 120578548 -23703941 + L2 LINE L2 2952 3313 0 786 269 55 72 chr12 120579126 120579270 -23703219 + L2 LINE L2 2563 2708 -606 1540 152 43 22 chr12 120579270 120579393 -23703096 + AluJb SINE Alu 1 120 -192 204 40 0 0 chr12 120579393 120579418 -23703071 + (CA)n Simple_repeat Simple_repeat 2 26 0 1540 152 43 22 chr12 120579418 120579571 -23702918 + AluJb SINE Alu 120 283 -29 786 269 55 72 chr12 120579571 120579828 -23702661 + L2 LINE L2 2708 2957 -357 497 213 19 37 chr12 120579834 120579942 -23702547 - MER81 DNA DNA -7 107 2 586 250 38 42 chr12 120579953 120580189 -23702300 + L2 LINE L2 2988 3222 -91 571 107 122 107 chr12 120580519 120580650 -23701839 + FLAM_C SINE Alu 1 133 0 303 207 0 0 chr12 120580809 120580867 -23701622 + MLT1F LTR MaLR 20 77 -465 2142 111 35 0 chr12 120580925 120581214 -23701275 + AluSx SINE Alu 1 299 -13 1610 160 10 31 chr12 120581224 120581518 -23700971 + AluJo SINE Alu 6 293 -19 252 182 34 80 chr12 120581674 120581762 -23700727 + MLT1H1 LTR MaLR 365 448 -107 1288 153 22 36 chr12 120581977 120582200 -23700289 - AluJb SINE Alu -11 301 82 183 42 0 0 chr12 120582552 120582576 -23699913 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2170 98 0 0 chr12 120582580 120582855 -23699634 - AluSx SINE Alu -37 275 1 1919 159 3 0 chr12 120582917 120583206 -23699283 + AluJb SINE Alu 1 290 -22 189 0 0 0 chr12 120583207 120583228 -23699261 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 916 192 0 6 chr12 120583251 120583428 -23699061 + AluJb SINE Alu 131 306 -6 2449 93 0 0 chr12 120583444 120583754 -23698735 + AluSp SINE Alu 1 310 -3 322 245 194 39 chr12 120583827 120583982 -23698507 + L2 LINE L2 2530 2708 -606 503 213 29 101 chr12 120584157 120584332 -23698157 - L1MC5 LINE L1 -198 7763 7577 966 132 0 22 chr12 120584332 120584468 -23698021 + AluJo/FLAM SINE Alu 1 133 -169 2440 74 0 0 chr12 120584469 120584766 -23697723 + AluY SINE Alu 1 297 -14 503 213 29 101 chr12 120584766 120584865 -23697624 - L1MC5 LINE L1 -383 7578 7507 1355 274 88 22 chr12 120584868 120585468 -23697021 + L2 LINE L2 2667 3313 0 2117 121 0 3 chr12 120585619 120585917 -23696572 + AluSg SINE Alu 1 297 -13 2505 76 3 0 chr12 120585962 120586265 -23696224 + AluSx SINE Alu 1 304 -8 1040 121 0 38 chr12 120586265 120586422 -23696067 + AluSg/x SINE Alu 132 282 -28 216 0 0 0 chr12 120586422 120586446 -23696043 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 299 270 10 40 chr12 120586474 120586574 -23695915 + L1MC4a LINE L1 5877 5973 -1835 22 0 0 0 chr12 120586703 120586725 -23695764 + AT_rich Low_complexity Low_complexity 1 22 0 1361 149 0 40 chr12 120586771 120586999 -23695490 - AluJo SINE Alu -12 300 82 419 148 0 0 chr12 120587018 120587079 -23695410 - U6 snRNA snRNA -46 61 1 408 311 58 36 chr12 120587379 120587688 -23694801 + L2 LINE L2 1695 2010 -1304 752 238 149 117 chr12 120587839 120587904 -23694585 - L2 LINE L2 0 3313 3252 700 202 0 8 chr12 120587904 120588028 -23694461 + FLAM_C SINE Alu 5 127 -6 752 238 149 117 chr12 120588028 120588246 -23694243 - L2 LINE L2 -61 3252 3043 1480 147 114 26 chr12 120588246 120588518 -23693971 - AluJo SINE Alu -16 296 1 1398 181 16 90 chr12 120588519 120588840 -23693649 - AluJo SINE Alu -15 297 1 752 238 149 117 chr12 120588840 120589016 -23693473 - L2 LINE L2 -269 3044 2836 1597 259 165 44 chr12 120590353 120591195 -23691294 - L2 LINE L2 -757 2557 1614 286 287 96 0 chr12 120591223 120591338 -23691151 - L1MC4a LINE L1 -1872 5936 5811 24 0 0 0 chr12 120591338 120591362 -23691127 + AT_rich Low_complexity Low_complexity 1 24 0 716 119 0 175 chr12 120591362 120591479 -23691010 - FLAM_C SINE Alu -169 133 50 2237 108 3 0 chr12 120591479 120591776 -23690713 + AluSx SINE Alu 1 298 -14 716 119 0 175 chr12 120591776 120591818 -23690671 - FLAM_C SINE Alu -252 50 2 561 215 116 62 chr12 120591961 120592203 -23690286 - L1MC5 LINE L1 -48 7913 7659 1738 124 11 29 chr12 120592227 120592537 -23689952 + AluJb SINE Alu 16 320 0 354 267 0 0 chr12 120592781 120592867 -23689622 - HAL1 LINE L1 -857 1650 1565 2081 122 26 0 chr12 120592912 120593216 -23689273 + AluSx SINE Alu 1 312 0 709 227 151 16 chr12 120593226 120593477 -23689012 - HAL1 LINE L1 -932 1575 1291 1313 190 0 9 chr12 120593478 120593710 -23688779 - AluJb SINE Alu -14 298 69 2390 84 0 10 chr12 120593756 120594064 -23688425 - AluSg SINE Alu -5 305 1 1934 114 28 31 chr12 120594068 120594358 -23688131 - AluSg SINE Alu -19 291 3 509 207 241 25 chr12 120594365 120594689 -23687800 - HAL1 LINE L1 -1209 1298 905 248 181 108 48 chr12 120595570 120595653 -23686836 - HAL1 LINE L1 -1588 919 832 269 223 32 43 chr12 120595673 120595767 -23686722 - L1MC5 LINE L1 -36 7925 7833 189 0 0 0 chr12 120595857 120595878 -23686611 + (T)n Simple_repeat Simple_repeat 1 21 0 327 325 110 39 chr12 120595890 120596145 -23686344 - HAL1 LINE L1 -1702 805 533 1964 148 3 28 chr12 120596446 120596764 -23685725 + AluJb SINE Alu 1 310 -2 371 235 159 23 chr12 120596861 120596993 -23685496 + HAL1 LINE L1 2301 2450 -57 1331 128 4 70 chr12 120597117 120597359 -23685130 - AluJb SINE Alu -6 306 81 507 92 0 0 chr12 120597359 120597424 -23685065 + LTR19B LTR ERV1 1 65 -515 528 156 13 0 chr12 120597425 120597502 -23684987 - AluJb SINE Alu -233 79 2 908 202 37 0 chr12 120597949 120598137 -23684352 + MER3 DNA MER1_type 1 195 -14 232 292 106 68 chr12 120597999 120598160 -23684329 - MER3 DNA MER1_type -4 205 39 * 351 261 64 1 chr12 120598191 120598334 -23684155 + L2 LINE L2 2851 3005 -308 270 277 62 0 chr12 120599515 120599580 -23682909 + L2 LINE L2 3169 3237 -35 204 333 0 12 chr12 120599595 120599676 -23682813 + GA-rich Low_complexity Low_complexity 1 80 0 367 172 263 10 chr12 120600494 120600593 -23681896 - L2 LINE L2 -1 3271 3148 392 256 34 34 chr12 120600702 120600819 -23681670 + MIR3 SINE MIR 3 119 -89 188 235 0 59 chr12 120600822 120600873 -23681616 - L2 LINE L2 0 3272 3225 * 309 297 133 0 chr12 120600871 120600999 -23681490 + MIR SINE MIR 117 261 -1 186 331 53 38 chr12 120601022 120601155 -23681334 - L2 LINE L2 -40 3232 3098 243 114 0 0 chr12 120601305 120601349 -23681140 + (A)n Simple_repeat Simple_repeat 1 44 0 484 291 30 18 chr12 120602955 120603120 -23679369 + MIR SINE MIR 84 250 -12 370 293 122 0 chr12 120603152 120603299 -23679190 - L3 LINE CR1 -207 1370 1206 463 233 17 8 chr12 120603730 120603850 -23678639 + L1MC5 LINE L1 7806 7926 -35 2461 78 0 0 chr12 120603858 120604154 -23678335 + AluSq SINE Alu 1 296 -17 1642 172 43 13 chr12 120604193 120604316 -23678173 + AluJo SINE Alu 1 119 -193 297 0 0 0 chr12 120604316 120604349 -23678140 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1642 172 43 13 chr12 120604349 120604528 -23677961 + AluJo SINE Alu 119 312 0 1230 115 0 16 chr12 120606178 120606360 -23676129 - AluSg/x SINE Alu 0 312 134 2178 111 3 7 chr12 120606360 120606667 -23675822 - AluSx SINE Alu -6 306 1 23 0 0 0 chr12 120606669 120606692 -23675797 + AT_rich Low_complexity Low_complexity 1 23 0 401 226 2 2 chr12 120606788 120606880 -23675609 + L1ME4a LINE L1 1216 6048 -41 982 176 0 0 chr12 120606925 120607078 -23675411 - AluSg/x SINE Alu -20 290 138 392 316 13 40 chr12 120608337 120608488 -23674001 + MIR3 SINE MIR 3 148 -72 1145 154 0 0 chr12 120608628 120608797 -23673692 + FRAM SINE Alu 1 169 -7 810 188 0 0 chr12 120608798 120608915 -23673574 - AluJo/FLAM SINE Alu -185 117 1 701 292 91 25 chr12 120608930 120609440 -23673049 + L2 LINE L2 2766 3307 -6 317 325 105 0 chr12 120609452 120609566 -23672923 + L2 LINE L2 3147 3272 0 1713 146 84 3 chr12 120610575 120610862 -23671627 + AluSq SINE Alu 1 310 -3 2091 121 44 7 chr12 120610872 120611170 -23671319 + AluSx SINE Alu 1 309 -3 2059 138 3 0 chr12 120611256 120611552 -23670937 - AluSx SINE Alu -15 297 1 1980 140 3 13 chr12 120612931 120613245 -23669244 + AluJb SINE Alu 1 311 -1 2220 95 0 10 chr12 120613296 120613590 -23668899 + AluSg SINE Alu 1 291 -19 2202 100 14 0 chr12 120613732 120614021 -23668468 - AluSx SINE Alu -18 294 2 213 183 50 17 chr12 120614654 120614714 -23667775 + A-rich Low_complexity Low_complexity 2 63 0 200 213 25 38 chr12 120614782 120614832 -23667657 + GA-rich Low_complexity Low_complexity 2 52 -28 1155 148 30 0 chr12 120614832 120615001 -23667488 + FAM SINE Alu 1 174 -1 200 213 25 38 chr12 120615001 120615030 -23667459 + GA-rich Low_complexity Low_complexity 52 80 0 959 168 12 12 chr12 120615103 120615270 -23667219 + FRAM SINE Alu 1 167 -9 836 129 48 0 chr12 120615974 120616098 -23666391 + FLAM_C SINE Alu 1 130 -3 1013 239 52 50 chr12 120616348 120616691 -23665798 + L1ME1 LINE L1 5798 6141 -25 22 56 0 0 chr12 120616768 120616804 -23665685 + AT_rich Low_complexity Low_complexity 1 36 0 1079 128 0 6 chr12 120616826 120617005 -23665484 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 1591 161 28 24 chr12 120617007 120617298 -23665191 - AluJo SINE Alu -20 292 1 1576 106 146 55 chr12 120618692 120618967 -23663522 - AluJo SINE Alu -12 300 1 1928 147 30 0 chr12 120619098 120619397 -23663092 + AluJo SINE Alu 1 308 -4 403 202 84 73 chr12 120619790 120619924 -23662565 + L1ME LINE L1 5625 5763 -358 2161 104 31 0 chr12 120619924 120620211 -23662278 + AluSg SINE Alu 1 296 -14 403 202 84 73 chr12 120620211 120620254 -23662235 + L1ME LINE L1 5763 5804 -317 206 89 44 44 chr12 120620266 120620311 -23662178 + (TTAAA)n Simple_repeat Simple_repeat 1 45 0 1819 160 7 3 chr12 120620989 120621316 -23661173 - AluJb SINE Alu 0 328 1 2101 141 7 0 chr12 120622242 120622546 -23659943 - AluSx SINE Alu -6 306 1 765 172 0 33 chr12 120622705 120622827 -23659662 + FLAM_C SINE Alu 2 119 -24 31 26 0 0 chr12 120622827 120622865 -23659624 + AT_rich Low_complexity Low_complexity 1 38 0 2359 84 3 0 chr12 120622873 120623170 -23659319 + AluSq SINE Alu 1 298 -15 438 247 153 27 chr12 120623446 120623596 -23658893 + L2 LINE L2 3104 3272 0 289 297 33 22 chr12 120623671 120623762 -23658727 - L3 LINE CR1 -237 1340 1249 372 282 28 22 chr12 120623792 120623808 -23658681 + MIR SINE MIR 23 37 -188 436 214 24 176 chr12 120623808 120623951 -23658538 + MER5B DNA MER1_type 1 104 -74 2165 113 3 0 chr12 120623951 120624244 -23658245 - AluSx SINE Alu -13 299 6 436 214 24 176 chr12 120624244 120624310 -23658179 + MER5B DNA MER1_type 104 178 0 372 282 28 22 chr12 120624310 120624430 -23658059 + MIR SINE MIR 37 164 -61 1531 226 118 7 chr12 120624636 120625060 -23657429 + L3 LINE CR1 912 1382 -195 342 210 56 91 chr12 120625072 120625129 -23657360 - MER5A DNA MER1_type -8 181 124 2219 103 0 26 chr12 120625129 120625440 -23657049 + AluSx SINE Alu 1 303 -9 342 210 56 91 chr12 120625440 120625525 -23656964 - MER5A DNA MER1_type -65 124 44 21 0 0 0 chr12 120625538 120625559 -23656930 + AT_rich Low_complexity Low_complexity 1 21 0 4098 167 41 39 chr12 120625560 120626391 -23656098 - L1MB8 LINE L1 0 6178 5346 757 156 30 22 chr12 120626445 120626580 -23655909 + FLAM_C SINE Alu 2 137 -6 1324 220 55 93 chr12 120626602 120626805 -23655684 + L1MC5 LINE L1 6923 7132 -829 2050 110 4 4 chr12 120626805 120627130 -23655359 + AluSx SINE Alu 1 325 0 6652 78 12 30 chr12 120627131 120627391 -23655098 + L1PB1 LINE L1 5215 5478 -673 1998 96 13 60 chr12 120627391 120627705 -23654784 + AluSq SINE Alu 1 299 -14 6652 78 12 30 chr12 120627705 120628022 -23654467 + L1PB1 LINE L1 5478 5799 -352 300 27 0 0 chr12 120628022 120628059 -23654430 + (CA)n Simple_repeat Simple_repeat 2 38 0 6652 78 12 30 chr12 120628059 120628300 -23654189 + L1PB1 LINE L1 5799 6020 -131 2210 91 11 0 chr12 120628300 120628576 -23653913 + AluSg SINE Alu 12 290 -20 6652 78 12 30 chr12 120628576 120628705 -23653784 + L1PB1 LINE L1 6020 6150 -1 1324 220 55 93 chr12 120628705 120629080 -23653409 + L1MC5 LINE L1 7131 7482 -479 2546 65 0 0 chr12 120629120 120629414 -23653075 + AluY SINE Alu 1 294 -17 945 196 44 62 chr12 120629430 120629751 -23652738 + L1MC5 LINE L1 7605 7919 -42 293 284 64 0 chr12 120630727 120630836 -23651653 + L1ME3A LINE L1 5494 5609 -555 1304 189 4 0 chr12 120630837 120631065 -23651424 - MLT1D LTR MaLR 0 505 277 256 156 31 94 chr12 120631152 120631179 -23651310 - MLT1D LTR MaLR -404 101 74 2227 144 75 34 chr12 120631179 120631220 -23651269 - MSTA LTR MaLR 0 428 390 2109 140 13 0 chr12 120631220 120631528 -23650961 + AluSx SINE Alu 1 312 0 2227 144 75 34 chr12 120631528 120631897 -23650592 - MSTA LTR MaLR -38 390 1 256 156 31 94 chr12 120631897 120631933 -23650556 - MLT1D LTR MaLR -431 74 42 974 255 30 18 chr12 120631933 120632266 -23650223 + L1ME3A LINE L1 5615 5951 -219 216 67 0 0 chr12 120632462 120632492 -23649997 + (TG)n Simple_repeat Simple_repeat 2 31 0 335 253 38 0 chr12 120632564 120632643 -23649846 - Tigger5 DNA MER2_type 0 2323 2242 2242 110 20 0 chr12 120632645 120632944 -23649545 + AluSx SINE Alu 1 305 -7 436 197 13 0 chr12 120632946 120633022 -23649467 + Tigger5 DNA MER2_type 2247 2323 0 22 0 0 0 chr12 120633028 120633050 -23649439 + AT_rich Low_complexity Low_complexity 1 22 0 1119 151 43 0 chr12 120633350 120633535 -23648954 + MER20 DNA MER1_type 27 219 0 21 0 0 0 chr12 120633706 120633727 -23648762 + AT_rich Low_complexity Low_complexity 1 21 0 182 156 0 0 chr12 120633853 120633885 -23648604 + MIR SINE MIR 216 247 -15 372 214 48 0 chr12 120633954 120634038 -23648451 + L2 LINE L2 3220 3307 -6 1734 170 7 11 chr12 120635052 120635334 -23647155 + AluJo SINE Alu 1 281 -31 185 0 40 0 chr12 120635340 120635365 -23647124 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1607 187 0 27 chr12 120636366 120636666 -23645823 + AluJo SINE Alu 1 292 -20 2157 142 3 0 chr12 120637515 120637824 -23644665 + AluSq SINE Alu 1 310 -3 1642 188 13 23 chr12 120637853 120638157 -23644332 + AluJb SINE Alu 1 301 -11 21 36 0 0 chr12 120638362 120638390 -23644099 + AT_rich Low_complexity Low_complexity 1 28 0 2136 68 4 0 chr12 120638537 120638803 -23643686 + AluY SINE Alu 45 311 0 294 273 62 31 chr12 120638980 120639108 -23643381 - MIR SINE MIR -117 145 14 200 227 23 0 chr12 120639233 120639277 -23643212 + CT-rich Low_complexity Low_complexity 4 48 0 265 253 69 35 chr12 120639860 120639947 -23642542 - Charlie8 DNA MER1_type -2327 90 1 30 45 0 0 chr12 120639974 120640018 -23642471 + AT_rich Low_complexity Low_complexity 1 44 0 2080 136 3 3 chr12 120640106 120640416 -23642073 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr12 120640993 120641015 -23641474 + AT_rich Low_complexity Low_complexity 1 22 0 1184 184 71 57 chr12 120641360 120641642 -23640847 + AluJo SINE Alu 5 290 -12 23 0 0 0 chr12 120641662 120641685 -23640804 + AT_rich Low_complexity Low_complexity 1 23 0 312 226 149 54 chr12 120641699 120641867 -23640622 + L1ME4a LINE L1 5922 6105 -16 2307 92 13 3 chr12 120641989 120642294 -23640195 + AluSg SINE Alu 1 308 -2 1902 149 23 3 chr12 120642825 120643127 -23639362 - AluJo SINE Alu -4 308 1 23 0 0 0 chr12 120644979 120645002 -23637487 + AT_rich Low_complexity Low_complexity 1 23 0 369 299 0 9 chr12 120645104 120645211 -23637278 + MER5B DNA MER1_type 6 111 -67 2180 83 0 0 chr12 120645214 120645478 -23637011 - AluSq SINE Alu -13 300 37 1850 183 0 0 chr12 120645484 120645785 -23636704 - AluJo SINE Alu -11 301 1 1042 116 14 0 chr12 120646427 120646573 -23635916 + AluSg SINE Alu 1 148 -162 579 235 9 0 chr12 120646811 120646926 -23635563 + FLAM_A SINE Alu 6 121 -21 1662 177 45 0 chr12 120646942 120647230 -23635259 - AluJb SINE Alu -3 309 9 1249 167 18 13 chr12 120647346 120647573 -23634916 + AluJb SINE Alu 67 294 -18 273 98 0 0 chr12 120647578 120647619 -23634870 + (CA)n Simple_repeat Simple_repeat 2 42 0 2121 80 28 7 chr12 120647864 120648152 -23634337 - AluSx SINE Alu -17 295 2 1160 109 0 36 chr12 120648174 120648356 -23634133 + AluSg/x SINE Alu 121 297 -15 2282 93 6 13 chr12 120648356 120648668 -23633821 + AluSx SINE Alu 1 310 -2 205 51 51 0 chr12 120649293 120649332 -23633157 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1491 140 14 0 chr12 120649338 120649559 -23632930 - AluJb SINE Alu -31 281 58 2091 131 3 0 chr12 120650160 120650457 -23632032 - AluSx SINE Alu -14 298 1 423 98 0 0 chr12 120650853 120650914 -23631575 + (TG)n Simple_repeat Simple_repeat 2 62 0 2045 140 7 0 chr12 120651100 120651393 -23631096 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 120651546 120651574 -23630915 + AT_rich Low_complexity Low_complexity 1 28 0 2176 135 0 0 chr12 120652211 120652507 -23629982 - AluSx SINE Alu -16 296 1 277 277 0 36 chr12 120652864 120652947 -23629542 - MIR3 SINE MIR -48 160 81 1931 139 34 0 chr12 120652947 120653242 -23629247 - AluJb SINE Alu -7 305 1 229 0 54 27 chr12 120653860 120653897 -23628592 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 283 150 17 0 chr12 120653985 120654045 -23628444 + L1M4 LINE L1 5273 5333 -813 2196 120 0 3 chr12 120654045 120654345 -23628144 - AluSx SINE Alu -13 299 1 564 96 85 11 chr12 120655169 120655263 -23627226 + MER53 DNA DNA 1 101 -88 752 124 0 18 chr12 120655298 120655411 -23627078 - FRAM SINE Alu -10 166 56 1839 126 14 37 chr12 120655442 120655594 -23626895 - AluSx SINE Alu -25 287 144 2542 69 7 3 chr12 120655594 120655900 -23626589 - AluY SINE Alu -4 307 1 1839 126 14 37 chr12 120655900 120656041 -23626448 - AluSx SINE Alu -168 144 1 2135 107 38 3 chr12 120656064 120656354 -23626135 - AluSx SINE Alu -12 300 1 1940 133 0 0 chr12 120656373 120656644 -23625845 - AluSx SINE Alu -36 276 6 674 241 104 8 chr12 120656646 120656887 -23625602 + L2 LINE L2 3050 3313 0 217 180 0 135 chr12 120656889 120656978 -23625511 + MIR SINE MIR 131 207 -55 4493 68 68 49 chr12 120657064 120657478 -23625011 + PABL_A LTR ERV1 1 433 -227 2277 43 58 0 chr12 120657478 120657755 -23624734 - AluYa5 SINE Alu -17 294 2 4493 68 68 49 chr12 120657755 120657988 -23624501 + PABL_A LTR ERV1 433 660 0 2619 39 3 7 chr12 120658009 120658317 -23624172 - AluY SINE Alu -4 307 1 35 41 0 0 chr12 120658921 120658970 -23623519 + GC_rich Low_complexity Low_complexity 1 49 0 197 242 143 22 chr12 120659303 120659394 -23623095 - MIR SINE MIR -77 131 30 302 273 0 11 chr12 120660170 120660258 -23622231 - MIR SINE MIR -126 136 50 1838 147 50 0 chr12 120660281 120660560 -23621929 - AluSg SINE Alu -17 293 1 1914 143 19 13 chr12 120660571 120660878 -23621611 - AluJb SINE Alu -3 309 1 241 224 79 53 chr12 120660922 120660998 -23621491 - MIR SINE MIR -96 112 35 284 238 163 61 chr12 120661486 120661633 -23620856 + Tigger8 DNA MER2_type 14 175 -491 384 235 189 0 chr12 120661675 120661807 -23620682 - MIR SINE MIR -91 171 15 254 191 85 0 chr12 120661807 120661854 -23620635 + Tigger8 DNA MER2_type 170 220 -446 1872 139 42 0 chr12 120662227 120662515 -23619974 - AluJb SINE Alu -12 300 1 1248 100 6 0 chr12 120662529 120662689 -23619800 - AluSg/x SINE Alu -23 286 126 2203 126 0 0 chr12 120662689 120662998 -23619491 - AluY SINE Alu -2 309 1 201 159 0 0 chr12 120663114 120663158 -23619331 + T-rich Low_complexity Low_complexity 1 44 0 1779 143 51 48 chr12 120663509 120663844 -23618645 + MER1B DNA MER1_type 2 337 0 2256 115 0 0 chr12 120664266 120664562 -23617927 + AluSx SINE Alu 1 296 -16 2137 113 3 0 chr12 120664565 120664876 -23617613 + AluSx SINE Alu 1 312 0 572 128 256 0 chr12 120664876 120664993 -23617496 + MER30 DNA MER1_type 84 230 0 210 241 114 38 chr12 120665334 120665413 -23617076 + L2 LINE L2 2542 2626 -688 374 323 132 47 chr12 120665826 120666290 -23616199 - L2 LINE L2 -1 3271 2764 2459 69 3 0 chr12 120666304 120666607 -23615882 + AluY SINE Alu 1 304 -7 2239 94 0 3 chr12 120666761 120667048 -23615441 + AluSc SINE Alu 1 286 -23 182 283 0 0 chr12 120667124 120667170 -23615319 + L2 LINE L2 3268 3313 0 833 236 127 32 chr12 120667652 120667934 -23614555 + MER113 DNA MER1_type? 1 323 -198 2317 101 0 10 chr12 120667934 120668230 -23614259 + AluSc SINE Alu 1 293 -16 833 236 127 32 chr12 120668230 120668294 -23614195 + MER113 DNA MER1_type? 323 380 -141 749 131 188 25 chr12 120668300 120668460 -23614029 + AluSg/x SINE Alu 115 300 -10 2274 99 3 10 chr12 120669080 120669383 -23613106 - AluSx SINE Alu -8 304 4 2566 57 0 0 chr12 120669596 120669896 -23612593 - AluY SINE Alu -11 300 1 2277 149 63 33 chr12 120671051 120671541 -23610948 - L1MC2 LINE L1 0 6344 5840 673 181 0 53 chr12 120672918 120673051 -23609438 + FLAM_A SINE Alu 1 126 -7 2488 61 0 7 chr12 120673075 120673372 -23609117 - AluY SINE Alu -16 295 1 23 0 0 0 chr12 120674460 120674483 -23608006 + AT_rich Low_complexity Low_complexity 1 23 0 2269 113 0 0 chr12 120674559 120674868 -23607621 - AluSx SINE Alu -3 309 1 1471 181 0 7 chr12 120676352 120676622 -23605867 - AluSx SINE Alu -44 268 1 2295 106 0 0 chr12 120676904 120677197 -23605292 + AluSg SINE Alu 1 293 -17 1598 184 0 11 chr12 120677347 120677614 -23604875 - AluJb SINE Alu -39 273 10 25 31 0 0 chr12 120677630 120677662 -23604827 + AT_rich Low_complexity Low_complexity 1 32 0 1975 129 3 3 chr12 120677672 120677959 -23604530 - AluSp SINE Alu -22 291 5 2343 97 0 3 chr12 120678036 120678347 -23604142 - AluY SINE Alu -1 310 1 1397 197 39 28 chr12 120678438 120678589 -23603900 - AluJb SINE Alu -20 292 135 1699 167 0 48 chr12 120678589 120678900 -23603589 - AluJb SINE Alu -16 296 1 1397 197 39 28 chr12 120678900 120679032 -23603457 - AluJb SINE Alu -177 135 6 1417 167 94 14 chr12 120679047 120679323 -23603166 - AluJb SINE Alu -14 298 1 1896 94 8 4 chr12 120680089 120680345 -23602144 + AluSq SINE Alu 54 310 -3 929 315 82 5 chr12 120680533 120680946 -23601543 + L2 LINE L2 2864 3308 -5 2022 83 4 4 chr12 120681212 120681476 -23601013 - AluY SINE Alu -13 298 35 324 257 114 14 chr12 120681632 120681772 -23600717 - L2 LINE L2 0 3313 3160 512 294 135 34 chr12 120681896 120682332 -23600157 - L2 LINE L2 -1 3312 2833 284 189 347 0 chr12 120682338 120682433 -23600056 - L2 LINE L2 -622 2692 2565 2436 88 0 0 chr12 120682616 120682913 -23599576 - AluSq SINE Alu -16 297 1 2378 87 0 3 chr12 120682918 120683217 -23599272 - AluSx SINE Alu -14 298 1 2097 117 73 0 chr12 120683631 120683947 -23598542 - MER1B DNA MER1_type 0 339 1 2004 128 31 0 chr12 120685540 120685828 -23596661 + AluSx SINE Alu 1 297 -15 1270 158 14 5 chr12 120686201 120686410 -23596079 + AluJb SINE Alu 82 292 -20 234 105 0 0 chr12 120686754 120686792 -23595697 + (TG)n Simple_repeat Simple_repeat 2 39 0 4949 127 45 58 chr12 120686836 120687812 -23594677 + MER52C LTR ERV1 26 1278 0 2093 125 6 26 chr12 120688251 120688562 -23593927 - AluSx SINE Alu -6 306 2 297 253 70 70 chr12 120688575 120688733 -23593756 - L3 LINE CR1 -1228 349 192 2228 103 7 17 chr12 120689127 120689429 -23593060 - AluSq SINE Alu -14 299 1 2359 89 0 0 chr12 120689626 120689918 -23592571 - AluSg1 SINE Alu -17 292 1 865 141 13 40 chr12 120689918 120690067 -23592422 - AluJb SINE Alu -16 296 152 2007 125 0 16 chr12 120690678 120690989 -23591500 - AluSc SINE Alu -3 306 1 198 272 40 72 chr12 120691097 120691222 -23591267 + L2 LINE L2 3180 3300 -13 874 151 0 0 chr12 120691619 120691745 -23590744 - FLAM_C SINE Alu -17 126 1 1885 108 0 137 chr12 120691956 120692300 -23590189 - AluSq SINE Alu -16 297 1 1398 214 3 29 chr12 120692903 120693211 -23589278 - AluJb SINE Alu -12 300 1 2159 127 10 0 chr12 120693222 120693529 -23588960 - AluSx SINE Alu -2 310 1 1853 124 7 38 chr12 120694520 120694699 -23587790 - AluJo SINE Alu -18 294 126 2257 112 0 0 chr12 120694699 120694985 -23587504 + AluSc SINE Alu 1 286 -23 1853 124 7 38 chr12 120694985 120695095 -23587394 - AluJo SINE Alu -186 126 14 2501 68 6 13 chr12 120695188 120695499 -23586990 - AluY SINE Alu -2 309 1 205 196 43 0 chr12 120695698 120695744 -23586745 + MIR SINE MIR 101 148 -60 265 287 103 52 chr12 120695811 120695913 -23586576 + MIR SINE MIR 12 128 -134 1458 163 78 39 chr12 120695913 120696196 -23586293 - AluSx SINE Alu -18 294 1 265 287 103 52 chr12 120696196 120696267 -23586222 + MIR SINE MIR 128 194 -68 40 21 0 0 chr12 120697680 120697727 -23584762 + AT_rich Low_complexity Low_complexity 1 47 0 756 187 0 15 chr12 120697861 120697995 -23584494 - FLAM_A SINE Alu -1 132 1 2386 98 3 0 chr12 120698002 120698307 -23584182 - AluSx SINE Alu -6 306 1 194 0 39 0 chr12 120698310 120698336 -23584153 + (TTA)n Simple_repeat Simple_repeat 2 28 0 304 250 192 0 chr12 120698336 120698456 -23584033 - L1MC4a LINE L1 -1930 5878 5736 1801 186 0 10 chr12 120698475 120698787 -23583702 - AluJo SINE Alu -3 309 1 2330 108 0 0 chr12 120699315 120699611 -23582878 + AluSq SINE Alu 1 296 -17 2456 90 0 0 chr12 120699788 120700098 -23582391 - AluY SINE Alu -1 310 1 1444 140 0 9 chr12 120700323 120700545 -23581944 - AluJo SINE Alu -92 220 1 348 316 13 40 chr12 120702231 120702382 -23580107 + MIR3 SINE MIR 3 148 -72 1151 154 0 0 chr12 120702522 120702691 -23579798 + FRAM SINE Alu 1 169 -7 758 188 0 0 chr12 120702692 120702809 -23579680 - AluJo/FLAM SINE Alu -185 117 1 575 292 91 25 chr12 120702824 120703334 -23579155 + L2 LINE L2 2766 3307 -6 280 325 105 0 chr12 120703346 120703460 -23579029 + L2 LINE L2 3147 3272 0 1729 146 84 3 chr12 120704469 120704756 -23577733 + AluSq SINE Alu 1 310 -3 2144 124 24 0 chr12 120704766 120705064 -23577425 + AluSx SINE Alu 1 305 -7 436 197 13 0 chr12 120705066 120705142 -23577347 + Tigger5 DNA MER2_type 2247 2323 0 22 0 0 0 chr12 120705148 120705170 -23577319 + AT_rich Low_complexity Low_complexity 1 22 0 1119 151 43 0 chr12 120705470 120705655 -23576834 + MER20 DNA MER1_type 27 219 0 21 0 0 0 chr12 120705826 120705847 -23576642 + AT_rich Low_complexity Low_complexity 1 21 0 182 156 0 0 chr12 120705973 120706005 -23576484 + MIR SINE MIR 216 247 -15 372 214 48 0 chr12 120706074 120706158 -23576331 + L2 LINE L2 3220 3307 -6 1734 170 7 11 chr12 120707172 120707454 -23575035 + AluJo SINE Alu 1 281 -31 185 0 40 0 chr12 120707460 120707485 -23575004 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1607 187 0 27 chr12 120708486 120708786 -23573703 + AluJo SINE Alu 1 292 -20 2157 142 3 0 chr12 120709635 120709944 -23572545 + AluSq SINE Alu 1 310 -3 1642 188 13 23 chr12 120709973 120710277 -23572212 + AluJb SINE Alu 1 301 -11 21 36 0 0 chr12 120710482 120710510 -23571979 + AT_rich Low_complexity Low_complexity 1 28 0 2136 68 4 0 chr12 120710657 120710923 -23571566 + AluY SINE Alu 45 311 0 294 273 62 31 chr12 120711100 120711228 -23571261 - MIR SINE MIR -117 145 14 200 227 23 0 chr12 120711353 120711397 -23571092 + CT-rich Low_complexity Low_complexity 4 48 0 265 253 69 35 chr12 120711980 120712067 -23570422 - Charlie8 DNA MER1_type -2327 90 1 30 45 0 0 chr12 120712094 120712138 -23570351 + AT_rich Low_complexity Low_complexity 1 44 0 2080 136 3 3 chr12 120712226 120712536 -23569953 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr12 120713113 120713135 -23569354 + AT_rich Low_complexity Low_complexity 1 22 0 1184 184 71 57 chr12 120713480 120713762 -23568727 + AluJo SINE Alu 5 290 -12 23 0 0 0 chr12 120713782 120713805 -23568684 + AT_rich Low_complexity Low_complexity 1 23 0 312 226 149 54 chr12 120713819 120713987 -23568502 + L1ME4a LINE L1 5922 6105 -16 2307 92 13 3 chr12 120714109 120714414 -23568075 + AluSg SINE Alu 1 308 -2 1902 149 23 3 chr12 120714945 120715247 -23567242 - AluJo SINE Alu -4 308 1 23 0 0 0 chr12 120717099 120717122 -23565367 + AT_rich Low_complexity Low_complexity 1 23 0 369 299 0 9 chr12 120717224 120717331 -23565158 + MER5B DNA MER1_type 6 111 -67 2180 83 0 0 chr12 120717334 120717598 -23564891 - AluSq SINE Alu -13 300 37 1850 183 0 0 chr12 120717604 120717905 -23564584 - AluJo SINE Alu -11 301 1 1042 116 14 0 chr12 120718547 120718693 -23563796 + AluSg SINE Alu 1 148 -162 579 235 9 0 chr12 120718931 120719046 -23563443 + FLAM_A SINE Alu 6 121 -21 1662 177 45 0 chr12 120719062 120719350 -23563139 - AluJb SINE Alu -3 309 9 1413 156 12 12 chr12 120719466 120719710 -23562779 + AluJb SINE Alu 67 310 -2 205 51 51 0 chr12 120720335 120720374 -23562115 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1816 136 29 0 chr12 120720380 120720653 -23561836 - AluJb SINE Alu -31 281 1 364 204 133 0 chr12 120720828 120720926 -23561563 - MER5C DNA MER1_type -213 111 1 218 157 39 39 chr12 120721033 120721084 -23561405 + MIR3 SINE MIR 152 202 -6 406 160 0 40 chr12 120721328 120721403 -23561086 + AluJb SINE Alu 165 236 -66 2138 125 3 3 chr12 120721841 120722138 -23560351 + AluSx SINE Alu 1 297 -15 702 225 0 0 chr12 120722255 120722384 -23560105 + FLAM_A SINE Alu 1 129 -4 2275 79 3 30 chr12 120722814 120723119 -23559370 + AluY SINE Alu 1 297 -14 285 192 41 27 chr12 120723128 120723201 -23559288 + MER5A DNA MER1_type 13 86 -103 2045 138 3 0 chr12 120723348 120723639 -23558850 - AluSx SINE Alu -20 292 1 826 175 39 13 chr12 120723643 120723797 -23558692 - FRAM SINE Alu -18 158 1 229 220 80 0 chr12 120723802 120723852 -23558637 + MER5A DNA MER1_type 130 183 -6 1005 185 0 17 chr12 120724093 120724271 -23558218 + FAM SINE Alu 1 175 0 2482 77 0 0 chr12 120724622 120724921 -23557568 + AluSq SINE Alu 1 299 -14 1687 156 43 14 chr12 120725211 120725493 -23556996 - AluJo SINE Alu -22 290 1 197 215 62 54 chr12 120726330 120726460 -23556029 - L2 LINE L2 -356 2957 2827 1865 159 7 0 chr12 120726627 120726922 -23555567 - AluJb SINE Alu -15 297 1 26 74 0 0 chr12 120726970 120727024 -23555465 + AT_rich Low_complexity Low_complexity 1 54 0 200 282 39 0 chr12 120727111 120727189 -23555300 + (TA)n Simple_repeat Simple_repeat 1 81 0 747 142 53 0 chr12 120727209 120727322 -23555167 - FLAM_C SINE Alu -23 120 2 2248 93 0 53 chr12 120727615 120727938 -23554551 + AluSg SINE Alu 1 306 -4 25 0 0 0 chr12 120727975 120728000 -23554489 + AT_rich Low_complexity Low_complexity 1 25 0 2207 127 0 6 chr12 120728043 120728357 -23554132 + AluSx SINE Alu 1 312 0 1752 156 3 22 chr12 120728369 120728683 -23553806 + AluJb SINE Alu 2 309 -3 788 195 73 6 chr12 120728832 120728996 -23553493 - MER58A DNA MER1_type -48 176 2 623 138 44 77 chr12 120729004 120729185 -23553304 - MER33 DNA MER1_type -1 323 149 825 154 132 0 chr12 120729186 120729322 -23553167 + FRAM SINE Alu 1 152 -24 749 169 38 12 chr12 120729337 120729497 -23552992 - MER33 DNA MER1_type -160 164 1 1991 125 3 16 chr12 120729682 120729987 -23552502 - AluJb SINE Alu -2 310 10 21 0 0 0 chr12 120730038 120730059 -23552430 + AT_rich Low_complexity Low_complexity 1 21 0 1484 177 13 50 chr12 120730148 120730447 -23552042 + AluJo SINE Alu 1 288 -24 2331 89 3 0 chr12 120730538 120730831 -23551658 + AluSq SINE Alu 20 313 0 630 182 13 84 chr12 120730882 120730940 -23551549 - Charlie4 DNA MER1_type -350 158 97 2024 123 11 0 chr12 120730940 120731281 -23551208 + AluSx SINE Alu 1 275 -37 630 182 13 84 chr12 120731281 120731376 -23551113 - Charlie4 DNA MER1_type -411 97 16 2345 87 0 3 chr12 120731458 120731769 -23550720 + AluSx SINE Alu 1 310 -2 401 267 124 30 chr12 120732456 120732738 -23549751 + L1ME4a LINE L1 5774 6116 -5 2057 124 3 10 chr12 120733257 120733564 -23548925 - AluSx SINE Alu -7 305 1 548 271 109 13 chr12 120733602 120733831 -23548658 + L1MC4a LINE L1 5501 5751 -370 2573 164 39 24 chr12 120733833 120734326 -23548163 + MLT1D LTR MaLR 2 501 -4 343 288 73 26 chr12 120734327 120734518 -23547971 + L1MC4a LINE L1 5743 5942 -1866 2027 134 3 0 chr12 120735214 120735521 -23546968 + AluSq SINE Alu 1 308 -5 2254 100 3 0 chr12 120735525 120735835 -23546654 + AluSp SINE Alu 1 311 -2 1510 185 30 13 chr12 120736025 120736182 -23546307 - AluJo SINE Alu -4 308 155 2198 56 0 78 chr12 120736182 120736504 -23545985 - AluY SINE Alu -14 297 1 1510 185 30 13 chr12 120736504 120736649 -23545840 - AluJo SINE Alu -157 155 1 1358 191 52 10 chr12 120736677 120736965 -23545524 - AluJb SINE Alu -12 300 1 724 204 39 123 chr12 120737024 120737179 -23545310 + MIR SINE MIR 1 127 -135 1889 101 66 0 chr12 120737179 120737466 -23545023 + AluSx SINE Alu 1 306 -6 724 204 39 123 chr12 120737466 120737570 -23544919 + MIR SINE MIR 127 238 -24 2116 120 3 0 chr12 120737643 120737944 -23544545 + AluSx SINE Alu 1 302 -10 1438 181 50 4 chr12 120737975 120738252 -23544237 + AluJo SINE Alu 1 290 -22 377 300 36 0 chr12 120738260 120738370 -23544119 - MIR SINE MIR -148 114 1 1997 196 80 36 chr12 120738823 120739298 -23543191 - L1ME1 LINE L1 -1 6165 5670 1603 148 13 39 chr12 120739707 120740017 -23542472 + AluSx SINE Alu 1 302 -10 888 262 117 77 chr12 120740080 120740162 -23542327 + L2 LINE L2 2636 2713 -600 2456 53 0 0 chr12 120740162 120740466 -23542023 - AluY SINE Alu -7 304 1 888 262 117 77 chr12 120740466 120740751 -23541738 + L2 LINE L2 2713 2985 -328 1895 141 3 6 chr12 120740751 120741063 -23541426 + AluSx SINE Alu 1 311 -1 888 262 117 77 chr12 120741063 120741078 -23541411 + L2 LINE L2 2985 2998 -315 622 181 63 24 chr12 120741078 120741205 -23541284 + FLAM_C SINE Alu 1 132 -1 888 262 117 77 chr12 120741205 120741447 -23541042 + L2 LINE L2 2998 3309 -4 2133 114 3 0 chr12 120741509 120741808 -23540681 + AluSx SINE Alu 1 300 -12 1743 124 40 47 chr12 120742134 120742432 -23540057 + AluJb SINE Alu 1 296 -16 1641 144 0 109 chr12 120742506 120742845 -23539644 - AluJb SINE Alu 0 302 1 1850 123 7 42 chr12 120742912 120743076 -23539413 - AluSx SINE Alu -13 299 150 1872 92 0 0 chr12 120743076 120743316 -23539173 - AluSg SINE Alu -11 299 60 1850 123 7 42 chr12 120743316 120743461 -23539028 - AluSx SINE Alu -162 150 1 256 180 49 16 chr12 120743483 120743544 -23538945 + MLT1G1 LTR MaLR 1 63 -532 21 0 0 0 chr12 120743544 120743565 -23538924 + AT_rich Low_complexity Low_complexity 1 21 0 297 51 0 0 chr12 120743565 120743604 -23538885 + (TTA)n Simple_repeat Simple_repeat 3 41 0 2403 11 4 0 chr12 120743618 120743894 -23538595 - AluYa5 SINE Alu -34 277 1 930 202 128 23 chr12 120743895 120744152 -23538337 + Charlie1b DNA MER1_type 19 302 -221 1063 153 56 5 chr12 120744156 120744352 -23538137 - AluJo SINE Alu -22 290 85 1775 115 31 14 chr12 120744460 120744748 -23537741 - AluSx SINE Alu -19 293 1 611 269 41 0 chr12 120744748 120744919 -23537570 - AluJb SINE Alu -13 299 122 310 256 184 0 chr12 120744921 120745046 -23537443 + L1MC/D LINE L1 5460 5607 -2201 491 181 43 0 chr12 120745053 120745147 -23537342 + AluJ/FLAM SINE Alu 2 99 -213 332 281 38 75 chr12 120748101 120748164 -23534325 - MIR SINE MIR -61 201 137 1745 106 91 0 chr12 120748164 120748429 -23534060 - AluSx SINE Alu -23 289 1 332 281 38 75 chr12 120748429 120748525 -23533964 - MIR SINE MIR -125 137 48 1830 122 34 3 chr12 120750138 120750434 -23532055 + AluSx SINE Alu 1 305 -7 772 181 58 119 chr12 120750436 120750696 -23531793 + AluJo SINE Alu 2 245 -67 309 157 0 0 chr12 120750785 120750836 -23531653 + Alu SINE Alu 256 306 -2 326 250 38 76 chr12 120750837 120750969 -23531520 + MIR SINE MIR 136 262 0 2364 93 0 3 chr12 120750971 120751283 -23531206 - AluSx SINE Alu 0 312 2 321 200 175 3 chr12 120751418 120751547 -23530942 - MIR SINE MIR -66 196 8 2180 93 0 13 chr12 120752291 120752456 -23530033 - AluSx SINE Alu -14 298 137 2276 75 0 0 chr12 120752456 120752748 -23529741 - AluY SINE Alu -19 292 1 2180 93 0 13 chr12 120752748 120752884 -23529605 - AluSx SINE Alu -175 137 1 1322 136 9 9 chr12 120752887 120753100 -23529389 - AluJb SINE Alu -14 298 86 1513 92 0 0 chr12 120753137 120753378 -23529111 + AluSg/x SINE Alu 87 327 0 210 238 16 16 chr12 120753382 120753445 -23529044 + (TG)n Simple_repeat Simple_repeat 2 64 0 2286 80 0 10 chr12 120753664 120753976 -23528513 + AluY SINE Alu 1 309 -2 294 104 15 134 chr12 120753987 120754082 -23528407 - FLAM SINE Alu 0 133 53 230 319 52 109 chr12 120754111 120754153 -23528336 - L2 LINE L2 -37 3235 3192 842 163 0 15 chr12 120754153 120754288 -23528201 + FLAM_C SINE Alu 1 133 0 230 319 52 109 chr12 120754288 120754612 -23527877 - L2 LINE L2 -80 3192 2890 232 203 0 87 chr12 120754719 120754788 -23527701 - L2 LINE L2 -583 2731 2669 481 251 212 0 chr12 120754856 120755013 -23527476 - MIR SINE MIR 0 262 74 2272 75 7 7 chr12 120755031 120755336 -23527153 + AluY SINE Alu 1 305 -6 400 344 46 31 chr12 120755428 120755687 -23526802 - L2 LINE L2 -198 3074 2812 662 182 0 0 chr12 120755709 120755819 -23526670 + FLAM_C SINE Alu 15 124 -19 2128 107 0 10 chr12 120755839 120756139 -23526350 + AluSx SINE Alu 1 297 -15 735 176 0 15 chr12 120756140 120756271 -23526218 - AluJo/FLAM SINE Alu -171 131 3 2002 118 0 41 chr12 120756365 120756542 -23525947 - AluSx SINE Alu -10 302 142 2547 52 0 0 chr12 120756542 120756847 -23525642 - AluY SINE Alu -6 305 1 2002 118 0 41 chr12 120756847 120756984 -23525505 - AluSx SINE Alu -170 142 1 1007 79 0 0 chr12 120756992 120757118 -23525371 - AluSq/x SINE Alu -182 130 5 200 302 94 31 chr12 120757119 120757215 -23525274 - L2 LINE L2 -587 2727 2626 230 333 0 14 chr12 120757395 120757467 -23525022 + MIR SINE MIR 20 90 -172 1979 128 3 0 chr12 120757467 120757765 -23524724 - AluSx SINE Alu -13 299 1 327 365 22 29 chr12 120757812 120757949 -23524540 + L2 LINE L2 2564 2699 -615 913 98 8 0 chr12 120757971 120758103 -23524386 - FLAM_C SINE Alu 0 143 11 1668 109 0 19 chr12 120758109 120758366 -23524123 - AluJb SINE Alu -56 256 5 2275 57 0 0 chr12 120758402 120758685 -23523804 - AluSc SINE Alu -26 283 1 1379 167 120 4 chr12 120758693 120758951 -23523538 - AluJb SINE Alu -14 288 1 373 207 27 99 chr12 120758951 120759056 -23523433 - MIR SINE MIR -111 151 55 23 54 0 0 chr12 120759547 120759584 -23522905 + GC_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr12 120759686 120759716 -23522773 + GC_rich Low_complexity Low_complexity 1 30 0 328 195 12 37 chr12 120760178 120760260 -23522229 - MIR SINE MIR -71 191 112 569 237 53 0 chr12 120760360 120760491 -23521998 - MIR SINE MIR -69 193 56 2334 91 7 0 chr12 120760741 120761049 -23521440 - AluSg SINE Alu 0 310 1 694 230 6 12 chr12 120761633 120761798 -23520691 - L1MA10 LINE L1 -1 6333 6170 243 136 17 85 chr12 120761819 120761878 -23520611 - L1ME1 LINE L1 -190 5976 5922 792 184 0 15 chr12 120761885 120762021 -23520468 - AluJo SINE Alu -177 135 2 1702 145 28 3 chr12 120762053 120762335 -23520154 - AluJo SINE Alu -23 289 1 238 262 325 21 chr12 120762356 120762593 -23519896 - L2 LINE L2 0 3313 3005 188 344 0 0 chr12 120763584 120763645 -23518844 - L2 LINE L2 -78 3194 3134 1966 149 0 0 chr12 120763699 120763987 -23518502 - AluSx SINE Alu -18 294 7 331 268 7 87 chr12 120763992 120764130 -23518359 + L1MC4 LINE L1 6577 6703 -1339 1784 154 0 22 chr12 120764148 120764459 -23518030 - AluJo SINE Alu -8 304 1 535 303 44 29 chr12 120764531 120764921 -23517568 - L2 LINE L2 0 3313 2632 860 142 88 0 chr12 120765128 120765276 -23517213 - AluSg/x SINE Alu -20 292 132 429 20 0 0 chr12 120765276 120765326 -23517163 + (TG)n Simple_repeat Simple_repeat 2 51 0 256 213 0 0 chr12 120765326 120765373 -23517116 - AluY SINE Alu -132 169 123 396 0 0 0 chr12 120765373 120765417 -23517072 + (TG)n Simple_repeat Simple_repeat 2 45 0 259 88 0 0 chr12 120765418 120765452 -23517037 - AluJb SINE Alu -182 120 87 720 95 9 9 chr12 120765452 120765557 -23516932 - AluJb SINE Alu -203 109 5 316 319 14 57 chr12 120765572 120765713 -23516776 + L1M4 LINE L1 5679 5813 -365 913 163 0 0 chr12 120765958 120766105 -23516384 - L1PB4 LINE L1 -10 6146 6000 1228 170 146 4 chr12 120766147 120766400 -23516089 - AluJo SINE Alu -23 289 1 2086 118 0 0 chr12 120766667 120766964 -23515525 - AluSq SINE Alu -16 297 1 186 43 0 0 chr12 120767131 120767154 -23515335 + (TG)n Simple_repeat Simple_repeat 2 24 0 840 158 0 0 chr12 120767211 120767344 -23515145 - FLAM_C SINE Alu 0 133 1 1831 151 0 3 chr12 120767370 120767662 -23514827 + AluSx SINE Alu 1 291 -21 200 140 0 18 chr12 120767662 120767672 -23514817 + (TA)n Simple_repeat Simple_repeat 1 10 -46 2329 68 0 0 chr12 120767672 120767965 -23514524 + AluY SINE Alu 1 293 -18 200 140 0 18 chr12 120767965 120768011 -23514478 + (TA)n Simple_repeat Simple_repeat 10 56 0 1708 191 3 0 chr12 120768149 120768458 -23514031 - AluJo SINE Alu -2 310 1 212 256 0 0 chr12 120768492 120768535 -23513954 - L2 LINE L2 0 3313 3271 189 0 0 0 chr12 120768804 120768825 -23513664 + (T)n Simple_repeat Simple_repeat 1 21 0 1844 121 68 0 chr12 120769155 120769436 -23513053 - AluSp SINE Alu -13 300 1 1329 194 57 35 chr12 120769548 120769856 -23512633 - AluJo SINE Alu 0 315 2 22 35 0 0 chr12 120769856 120769885 -23512604 + AT_rich Low_complexity Low_complexity 1 29 0 300 263 26 0 chr12 120770336 120770412 -23512077 - L2 LINE L2 -13 3259 3182 879 107 8 0 chr12 120770417 120770548 -23511941 + FRAM SINE Alu 34 165 -11 229 290 0 0 chr12 120770895 120770957 -23511532 - MIR SINE MIR -43 219 158 598 296 109 17 chr12 120770993 120771428 -23511061 + L1ME LINE L1 5122 5596 -743 427 213 0 0 chr12 120771443 120771518 -23510971 + Tigger3(Golem) DNA MER2_type 2 76 -2953 2099 108 3 10 chr12 120771518 120771824 -23510665 + AluSq SINE Alu 1 304 -9 2316 69 0 20 chr12 120772339 120772645 -23509844 - AluY SINE Alu -10 301 2 2273 77 3 0 chr12 120772884 120773182 -23509307 + AluY SINE Alu 1 299 -12 214 266 153 24 chr12 120773345 120773496 -23508993 + MIR SINE MIR 38 204 -58 2138 114 0 0 chr12 120773535 120773833 -23508656 + AluSx SINE Alu 2 299 -13 25 0 0 0 chr12 120773834 120773859 -23508630 + AT_rich Low_complexity Low_complexity 1 25 0 2230 104 0 0 chr12 120774290 120774597 -23507892 + AluSx SINE Alu 6 312 0 246 32 0 0 chr12 120776210 120776241 -23506248 + (CCG)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chr12 120776338 120776367 -23506122 + GC_rich Low_complexity Low_complexity 1 29 0 297 0 0 0 chr12 120776450 120776483 -23506006 + (CCG)n Simple_repeat Simple_repeat 2 34 0 1741 121 26 0 chr12 120777133 120777406 -23505083 + AluJo SINE Alu 1 280 -32 2027 105 0 11 chr12 120777620 120777943 -23504546 + AluSx SINE Alu 1 320 0 827 241 15 0 chr12 120777955 120778154 -23504335 + L1ME LINE L1 5604 5805 -316 1805 155 0 13 chr12 120778154 120778457 -23504032 + AluJo SINE Alu 1 299 -13 427 302 67 7 chr12 120778555 120778704 -23503785 - MIR SINE MIR -71 191 34 2179 79 3 57 chr12 120778750 120779065 -23503424 - AluSx SINE Alu -14 298 1 1545 113 0 0 chr12 120779067 120779288 -23503201 - AluSg/x SINE Alu -8 304 84 682 192 0 8 chr12 120779309 120779434 -23503055 - FLAM_C SINE Alu -9 124 1 261 0 0 0 chr12 120780416 120780445 -23502044 + (CA)n Simple_repeat Simple_repeat 2 30 0 2358 53 23 0 chr12 120780917 120781220 -23501269 + AluY SINE Alu 1 310 -1 2086 109 10 23 chr12 120781224 120781528 -23500961 + AluSx SINE Alu 13 312 0 244 327 79 0 chr12 120781607 120781708 -23500781 - L2 LINE L2 -1 3312 3204 217 282 200 27 chr12 120781914 120782024 -23500465 + MIR SINE MIR 42 170 -92 1300 162 24 105 chr12 120782027 120782053 -23500436 - MLT1B LTR MaLR -113 354 327 220 36 0 0 chr12 120782053 120782081 -23500408 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1865 153 4 4 chr12 120782081 120782362 -23500127 - AluJb SINE Alu -1 308 1 1300 162 24 105 chr12 120782362 120782495 -23499994 - MLT1B LTR MaLR -139 328 186 1813 161 34 0 chr12 120782495 120782786 -23499703 - AluJo SINE Alu -11 301 1 1300 162 24 105 chr12 120782786 120782971 -23499518 - MLT1B LTR MaLR -281 186 1 7672 31 4 8 chr12 120783105 120784124 -23498365 + L1PA5 LINE L1 5139 6154 0 29 47 0 0 chr12 120784124 120784167 -23498322 + AT_rich Low_complexity Low_complexity 1 43 0 2058 123 3 19 chr12 120784167 120784483 -23498006 + AluSx SINE Alu 1 311 -1 239 239 52 37 chr12 120784514 120784648 -23497841 - L1MC4 LINE L1 -1298 6744 6609 27 29 0 0 chr12 120784684 120784718 -23497771 + AT_rich Low_complexity Low_complexity 1 34 0 303 199 47 14 chr12 120784750 120784971 -23497518 + T-rich Low_complexity Low_complexity 1 228 0 386 119 9 0 chr12 120785077 120785144 -23497345 - AluS SINE Alu -209 93 35 1644 176 0 4 chr12 120785144 120785411 -23497078 - AluJb SINE Alu -46 266 1 24 0 0 0 chr12 120785739 120785763 -23496726 + AT_rich Low_complexity Low_complexity 1 24 0 904 110 0 0 chr12 120785994 120786112 -23496377 + FLAM_C SINE Alu 1 118 -15 22 56 0 0 chr12 120786112 120786148 -23496341 + AT_rich Low_complexity Low_complexity 1 36 0 515 215 148 0 chr12 120786432 120786581 -23495908 - MIR SINE MIR -56 206 36 255 273 58 8 chr12 120787110 120787231 -23495258 - L1M4 LINE L1 -1006 5140 5014 2134 106 6 38 chr12 120787232 120787552 -23494937 - AluSx SINE Alu -2 310 1 572 291 35 3 chr12 120787592 120787877 -23494612 - L1M4 LINE L1 -2344 3802 3509 278 143 24 0 chr12 120787918 120787960 -23494529 - MER57A LTR ERV1 -66 337 295 1642 182 6 31 chr12 120788404 120788578 -23493911 - AluJo SINE Alu -2 310 146 2271 115 0 3 chr12 120788578 120788874 -23493615 - AluSx SINE Alu -17 295 1 1642 182 6 31 chr12 120788874 120789017 -23493472 - AluJo SINE Alu -166 146 1 669 219 135 0 chr12 120789107 120789285 -23493204 - MIR SINE MIR -36 226 25 1157 149 5 0 chr12 120789378 120789566 -23492923 - AluSq SINE Alu -5 308 120 2131 115 0 3 chr12 120789575 120789861 -23492628 - AluSx SINE Alu -27 285 1 204 67 0 0 chr12 120789876 120789906 -23492583 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2271 77 35 3 chr12 120790368 120790655 -23491834 - AluY SINE Alu -15 296 1 2260 123 0 7 chr12 120790655 120790965 -23491524 - AluSx SINE Alu -2 310 3 2327 99 6 3 chr12 120791043 120791355 -23491134 - AluSp SINE Alu 0 313 1 1916 154 0 13 chr12 120791355 120791654 -23490835 - AluJb SINE Alu -17 295 1 2443 54 7 3 chr12 120791874 120792168 -23490321 - AluY SINE Alu -16 295 1 384 170 16 0 chr12 120792247 120792356 -23490133 - L1MC4 LINE L1 -1 8041 7707 1076 118 84 89 chr12 120792356 120792552 -23489937 - MER46A DNA MER2_type -2495 236 40 2186 113 3 0 chr12 120792552 120792843 -23489646 - AluSx SINE Alu -20 292 1 1076 118 84 89 chr12 120792843 120792883 -23489606 - MER46A DNA MER2_type -2691 40 1 185 0 40 0 chr12 120792894 120792919 -23489570 + (TC)n Simple_repeat Simple_repeat 2 27 0 1139 164 50 14 chr12 120793142 120793361 -23489128 - AluSg/x SINE Alu -9 303 77 2231 124 0 0 chr12 120793361 120793652 -23488837 - AluSx SINE Alu -21 291 1 432 222 83 0 chr12 120793654 120793794 -23488695 - L1 LINE L1 -916 5230 5077 456 208 49 35 chr12 120793807 120793951 -23488538 + L2 LINE L2 2875 3020 -252 1669 179 86 31 chr12 120794065 120794118 -23488371 + MSTB LTR MaLR 4 53 -404 2202 114 3 0 chr12 120794118 120794407 -23488082 + AluSq SINE Alu 1 290 -23 1669 179 86 31 chr12 120794407 120794421 -23488068 + MSTB LTR MaLR 53 65 -392 2279 124 0 0 chr12 120794421 120794727 -23487762 + AluSx SINE Alu 3 308 -4 1669 179 86 31 chr12 120794727 120795062 -23487427 + MSTB LTR MaLR 65 418 -39 1747 157 3 37 chr12 120795063 120795363 -23487126 + AluJb SINE Alu 1 290 -22 226 37 0 0 chr12 120795376 120795403 -23487086 + MSTB LTR MaLR 373 399 -27 2109 108 0 75 chr12 120795462 120795611 -23486878 + AluSx SINE Alu 1 114 -198 1984 125 7 4 chr12 120795611 120795913 -23486576 + AluSq SINE Alu 5 307 0 2109 108 0 75 chr12 120795913 120796095 -23486394 + AluSx SINE Alu 114 308 -4 251 128 0 0 chr12 120796112 120796151 -23486338 + L1M4 LINE L1 5571 5609 -569 2247 92 3 0 chr12 120796151 120796456 -23486033 + AluSp SINE Alu 1 306 0 11031 106 3 15 chr12 120796456 120797251 -23485238 + L1P LINE L1 1395 2198 -3948 2360 95 0 0 chr12 120797251 120797547 -23484942 + AluY SINE Alu 1 296 -15 11031 106 3 15 chr12 120797547 120797558 -23484931 + L1P LINE L1 2198 2208 -3938 2126 131 0 7 chr12 120797558 120797856 -23484633 + AluSg SINE Alu 1 296 -14 11031 106 3 15 chr12 120797856 120798677 -23483812 + L1P LINE L1 2208 3003 -3143 941 54 0 0 chr12 120798677 120798788 -23483701 - AluY SINE Alu -11 300 190 7255 57 0 17 chr12 120798788 120798918 -23483571 + L1PA8 LINE L1 5123 5254 -918 2493 55 0 0 chr12 120798918 120799210 -23483279 - AluY SINE Alu -19 292 1 7255 57 0 17 chr12 120799210 120799925 -23482564 + L1PA8 LINE L1 5254 5942 -230 2495 63 3 0 chr12 120799925 120800228 -23482261 + AluY SINE Alu 1 304 -7 7255 57 0 17 chr12 120800228 120800455 -23482034 + L1PA8 LINE L1 5942 6171 -1 2286 54 11 4 chr12 120800459 120800735 -23481754 + AluY SINE Alu 1 278 -33 999 158 15 4 chr12 120801174 120801434 -23481055 + (TA)n Simple_repeat Simple_repeat 1 264 0 777 211 88 48 chr12 120801434 120801661 -23480828 - L1MC4 LINE L1 -124 7918 7683 2089 116 17 0 chr12 120801822 120802116 -23480373 - AluSp SINE Alu -14 299 1 2036 147 0 3 chr12 120802116 120802416 -23480073 - AluJb SINE Alu -13 299 1 455 106 15 0 chr12 120802416 120802482 -23480007 - AluJb SINE Alu -175 137 71 261 0 0 0 chr12 120803421 120803450 -23479039 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 203 180 0 20 chr12 120804632 120804682 -23477807 + G-rich Low_complexity Low_complexity 1 49 0 189 0 0 0 chr12 120805441 120805462 -23477027 + (G)n Simple_repeat Simple_repeat 1 21 0 2021 99 0 55 chr12 120806210 120806502 -23475987 - AluSx SINE Alu -35 277 2 353 25 0 0 chr12 120806647 120806687 -23475802 + LTR23 LTR ERV1 320 359 -78 2384 160 28 48 chr12 120806774 120807273 -23475216 + L1MC2 LINE L1 5644 6132 -212 253 144 144 22 chr12 120807297 120807387 -23475102 + L1MC2 LINE L1 6112 6212 -132 192 77 0 0 chr12 120807388 120807414 -23475075 + (T)n Simple_repeat Simple_repeat 1 26 0 490 240 50 52 chr12 120807727 120807931 -23474558 + L1M4 LINE L1 5615 5820 -358 1682 185 0 22 chr12 120807935 120808248 -23474241 + AluJo SINE Alu 1 306 -6 1717 161 63 3 chr12 120808281 120808567 -23473922 + AluJo SINE Alu 1 303 -9 1985 104 0 0 chr12 120808594 120808844 -23473645 + AluSc SINE Alu 1 250 -59 316 185 0 0 chr12 120809000 120809054 -23473435 + MSTB LTR MaLR 3 56 -370 2167 114 3 3 chr12 120809054 120809344 -23473145 + AluSq SINE Alu 1 290 -23 1066 111 0 14 chr12 120809358 120809502 -23472987 + AluSq/x SINE Alu 3 144 -168 1907 147 7 7 chr12 120809505 120809798 -23472691 + AluSx SINE Alu 5 297 -15 1793 160 13 3 chr12 120810596 120810902 -23471587 - AluY SINE Alu -2 309 1 351 78 0 20 chr12 120810902 120810953 -23471536 - AluJb SINE Alu -167 135 86 1423 171 0 9 chr12 120810953 120811175 -23471314 - AluJo SINE Alu -92 220 1 849 164 39 50 chr12 120811214 120811425 -23471064 - L1MB3 LINE L1 -272 5911 5609 2338 94 7 0 chr12 120811425 120811724 -23470765 - AluSx SINE Alu -11 301 1 849 164 39 50 chr12 120811724 120811750 -23470739 - L1MB3 LINE L1 -574 5609 5584 2129 167 52 131 chr12 120811776 120812227 -23470262 - L1MC4 LINE L1 -978 7064 6678 2238 105 0 0 chr12 120812227 120812512 -23469977 - AluSx SINE Alu -23 289 5 2129 167 52 131 chr12 120812512 120812711 -23469778 - L1MC4 LINE L1 -1364 6678 6465 2278 99 7 0 chr12 120812721 120813024 -23469465 - AluSp SINE Alu -8 305 1 21 0 0 0 chr12 120813796 120813817 -23468672 + AT_rich Low_complexity Low_complexity 1 21 0 791 143 23 23 chr12 120813825 120813958 -23468531 - FLAM_C SINE Alu 0 133 1 1871 157 7 17 chr12 120813958 120814251 -23468238 - AluJo SINE Alu -20 292 3 2313 108 0 0 chr12 120814589 120814884 -23467605 - AluSq SINE Alu -18 295 1 2124 142 0 3 chr12 120814884 120815186 -23467303 - AluSx SINE Alu -11 301 1 484 271 77 72 chr12 120815194 120815286 -23467203 - L1MC4a LINE L1 -1750 6058 5968 2041 149 6 19 chr12 120815286 120815601 -23466888 - AluSx SINE Alu -1 311 1 484 271 77 72 chr12 120815601 120815896 -23466593 - L1MC4a LINE L1 -1840 5968 5669 2362 94 0 0 chr12 120815962 120816271 -23466218 - AluSq SINE Alu -4 309 1 2354 90 0 16 chr12 120816305 120816616 -23465873 + AluY SINE Alu 1 306 -5 253 79 0 26 chr12 120816616 120816654 -23465835 - L1ME LINE L1 -358 5812 5776 387 188 97 49 chr12 120816657 120816801 -23465688 - L1ME LINE L1 -344 5818 5668 2173 94 3 66 chr12 120816868 120817187 -23465302 + AluSp SINE Alu 1 299 -14 311 322 16 16 chr12 120818612 120818733 -23463756 - MER5A DNA MER1_type -19 170 50 2282 119 0 7 chr12 120818947 120819257 -23463232 - AluSx SINE Alu -1 311 4 2351 91 7 0 chr12 120819314 120819610 -23462879 - AluSx SINE Alu -14 298 1 1904 160 3 7 chr12 120819613 120819913 -23462576 - AluJb SINE Alu -13 299 1 279 0 0 0 chr12 120820573 120820604 -23461885 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 213 108 0 0 chr12 120820724 120820761 -23461728 + (T)n Simple_repeat Simple_repeat 1 37 0 1143 208 135 4 chr12 120820769 120821029 -23461460 - AluJb SINE Alu -5 297 4 515 178 69 0 chr12 120821191 120821209 -23461280 - L1M3 LINE L1 -540 5794 5779 2001 132 34 0 chr12 120821209 120821504 -23460985 - AluSx SINE Alu -7 305 1 515 178 69 0 chr12 120821504 120821586 -23460903 - L1M3 LINE L1 -555 5779 5687 419 233 61 50 chr12 120821820 120821903 -23460586 - L1MC5 LINE L1 -46 7915 7834 2173 120 7 0 chr12 120821903 120822204 -23460285 - AluSx SINE Alu -9 303 1 419 233 61 50 chr12 120822204 120822300 -23460189 - L1MC5 LINE L1 -127 7834 7734 2345 105 3 0 chr12 120822314 120822619 -23459870 - AluSx SINE Alu -6 306 1 1840 172 0 3 chr12 120823543 120823840 -23458649 - AluJb SINE Alu -12 300 5 646 128 0 18 chr12 120823842 120823951 -23458538 - AluJb SINE Alu -175 137 31 4455 42 46 135 chr12 120824021 120824779 -23457710 - L1PA8 LINE L1 -4 6168 5478 374 285 49 32 chr12 120824906 120825029 -23457460 + L2 LINE L2 3142 3266 -6 242 253 147 0 chr12 120825190 120825265 -23457224 - MIR SINE MIR -86 176 91 219 36 0 0 chr12 120825280 120825308 -23457181 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1821 167 7 0 chr12 120825313 120825594 -23456895 - AluJo SINE Alu -29 283 1 281 300 22 22 chr12 120825709 120825799 -23456690 - L2 LINE L2 -42 3230 3141 1881 158 3 0 chr12 120825840 120826131 -23456358 + AluJb SINE Alu 5 296 -16 633 214 107 59 chr12 120826355 120826518 -23455971 - L1MC5 LINE L1 -36 7925 7740 2139 114 0 32 chr12 120826518 120826852 -23455637 - AluSx SINE Alu 0 312 1 633 214 107 59 chr12 120826852 120826977 -23455512 - L1MC5 LINE L1 -221 7740 7623 306 0 0 0 chr12 120826993 120827027 -23455462 + (CA)n Simple_repeat Simple_repeat 2 35 0 2108 130 3 0 chr12 120827039 120827331 -23455158 - AluSx SINE Alu -18 294 2 24 32 0 0 chr12 120827460 120827491 -23454998 + AT_rich Low_complexity Low_complexity 1 31 0 2201 91 0 0 chr12 120827648 120827947 -23454542 + AluSc SINE Alu 3 301 0 984 199 89 48 chr12 120828028 120828364 -23454125 - L1MC5 LINE L1 -499 7462 7113 1530 207 30 3 chr12 120828407 120828711 -23453778 - AluJo SINE Alu 0 312 1 681 164 17 0 chr12 120828718 120828834 -23453655 - AluJo SINE Alu -176 136 19 671 262 199 44 chr12 120828893 120829161 -23453328 - L1MC4a LINE L1 -211 5910 6113 1650 171 23 13 chr12 120829161 120829460 -23453029 + AluJo SINE Alu 2 303 -9 671 262 199 44 chr12 120829460 120830001 -23452488 - L1MC4a LINE L1 -7 6114 5658 42 20 0 0 chr12 120830267 120830316 -23452173 + AT_rich Low_complexity Low_complexity 1 49 0 623 148 148 0 chr12 120830348 120830449 -23452040 - FLAM_C SINE Alu -16 117 2 1816 139 39 29 chr12 120831500 120831809 -23450680 - AluSx SINE Alu 0 312 1 878 172 86 0 chr12 120831818 120831969 -23450520 - FAM SINE Alu -8 167 4 1980 108 59 11 chr12 120832234 120832521 -23449968 + AluSq SINE Alu 1 301 -12 1233 291 74 14 chr12 120833052 120833472 -23449017 - L2 LINE L2 -1 3312 2868 506 179 168 0 chr12 120833502 120833597 -23448892 + AluJo/FLAM SINE Alu 2 112 -200 1127 93 0 0 chr12 120833597 120833736 -23448753 - AluSq/x SINE Alu -173 139 1 25 51 0 0 chr12 120833780 120833819 -23448670 + AT_rich Low_complexity Low_complexity 1 39 0 2064 155 85 18 chr12 120834350 120834574 -23447915 - MSTB LTR MaLR 0 426 219 2247 105 0 13 chr12 120834574 120834879 -23447610 - AluSx SINE Alu -11 301 1 2064 155 85 18 chr12 120834879 120835053 -23447436 - MSTB LTR MaLR -207 219 1 1887 168 0 0 chr12 120835866 120836163 -23446326 + AluJo SINE Alu 1 297 -15 738 259 97 40 chr12 120836281 120836591 -23445898 - MER113 DNA MER1_type? -41 480 138 2190 136 0 0 chr12 120836591 120836899 -23445590 - AluSx SINE Alu -4 308 1 738 259 97 40 chr12 120836899 120837012 -23445477 - MER113 DNA MER1_type? -383 138 33 1300 209 0 0 chr12 120837013 120837243 -23445246 - AluJb SINE Alu -19 293 64 387 219 56 12 chr12 120837243 120837356 -23445133 - MER5A DNA MER1_type -77 106 1 382 271 40 11 chr12 120837388 120837574 -23444915 - MIR SINE MIR -3 259 68 406 154 0 0 chr12 120838462 120838527 -23443962 - AluJ/FRAM SINE Alu -7 295 231 348 24 0 0 chr12 120838535 120838576 -23443913 + (GA)n Simple_repeat Simple_repeat 2 42 0 1534 122 0 0 chr12 120838842 120839056 -23443433 - AluSg/x SINE Alu -17 295 82 510 165 176 0 chr12 120839116 120839207 -23443282 - AluSq/x SINE Alu -205 108 2 766 168 8 0 chr12 120839243 120839368 -23443121 - FLAM_A SINE Alu -4 129 4 340 273 91 59 chr12 120839442 120839618 -23442871 - L1ME4a LINE L1 -237 5884 5696 1617 131 124 0 chr12 120839618 120839885 -23442604 - AluSx SINE Alu -12 300 1 340 273 91 59 chr12 120839885 120839961 -23442528 - L1ME4a LINE L1 -425 5696 5624 201 133 0 0 chr12 120840086 120840116 -23442373 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 2285 92 7 0 chr12 120840649 120840942 -23441547 + AluSq SINE Alu 1 295 -18 1533 156 49 38 chr12 120840989 120841152 -23441337 - AluJo SINE Alu -21 291 122 2162 83 3 61 chr12 120841152 120841478 -23441011 + AluSx SINE Alu 1 307 -5 1533 156 49 38 chr12 120841478 120841602 -23440887 - AluJo SINE Alu -190 122 1 1922 149 0 49 chr12 120841687 120842015 -23440474 - AluJb SINE Alu 0 312 1 180 0 0 0 chr12 120842495 120842515 -23439974 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 871 131 0 16 chr12 120842517 120842639 -23439850 - FLAM_C SINE Alu -23 120 1 194 118 29 59 chr12 120842855 120842923 -23439566 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 744 150 0 57 chr12 120843049 120843189 -23439300 - FLAM_C SINE Alu -1 132 1 2146 134 0 0 chr12 120843571 120843863 -23438626 + AluSx SINE Alu 1 292 -20 210 37 0 0 chr12 120843868 120843895 -23438594 + (CAA)n Simple_repeat Simple_repeat 2 28 0 689 131 85 51 chr12 120843903 120844079 -23438410 - L1MC5 LINE L1 -44 7917 7736 1795 150 57 0 chr12 120844115 120844395 -23438094 - AluSx SINE Alu -16 296 1 510 207 21 48 chr12 120844397 120844542 -23437947 - L1MD3 LINE L1 -9 7986 7846 1082 288 73 5 chr12 120845234 120845375 -23437114 - L1MEc LINE L1 -4973 1423 1293 826 169 0 0 chr12 120845375 120845505 -23436984 + FLAM_C SINE Alu 1 130 -3 1082 288 73 5 chr12 120845505 120845804 -23436685 - L1MEc LINE L1 -5103 1293 953 2046 143 3 3 chr12 120845810 120846118 -23436371 - AluSx SINE Alu -4 308 1 2085 118 24 0 chr12 120847448 120847744 -23434745 - AluSx SINE Alu -9 303 1 2123 122 3 0 chr12 120848586 120848872 -23433617 - AluSx SINE Alu -21 291 5 400 269 71 7 chr12 120849394 120849535 -23432954 - L2 LINE L2 0 3313 3164 606 85 0 11 chr12 120849538 120849632 -23432857 + AluJ/FLAM SINE Alu 2 94 -218 335 300 35 50 chr12 120850034 120850234 -23432255 - L2 LINE L2 0 3313 3117 1859 160 0 20 chr12 120850272 120850578 -23431911 - AluJb SINE Alu -12 300 1 183 313 151 32 chr12 120850676 120851053 -23431436 - L2 LINE L2 -601 2713 2292 194 329 157 26 chr12 120851072 120851774 -23430715 - L2 LINE L2 -1736 1578 785 957 147 35 6 chr12 120851825 120851995 -23430494 + FRAM SINE Alu 1 175 -1 1708 154 42 18 chr12 120852063 120852348 -23430141 + AluSx SINE Alu 1 292 -20 263 357 84 29 chr12 120852510 120852748 -23429741 - MIR SINE MIR -3 259 9 2305 104 0 13 chr12 120852779 120853086 -23429403 + AluSx SINE Alu 1 303 -9 2191 120 7 0 chr12 120854218 120854518 -23427971 - AluSq SINE Alu -11 302 1 23 0 0 0 chr12 120854825 120854848 -23427641 + AT_rich Low_complexity Low_complexity 1 23 0 2052 139 0 0 chr12 120854880 120855168 -23427321 - AluSx SINE Alu -24 288 1 377 302 57 19 chr12 120855231 120855390 -23427099 - MIR SINE MIR -90 172 8 1818 175 0 7 chr12 120857389 120857692 -23424797 - AluJb SINE Alu -11 301 1 861 178 0 0 chr12 120857694 120857829 -23424660 - FLAM_C SINE Alu -6 137 3 239 265 96 12 chr12 120858377 120858460 -23424029 - L1MC4 LINE L1 -32 8010 7921 22 35 0 0 chr12 120858474 120858503 -23423986 + AT_rich Low_complexity Low_complexity 1 29 0 2305 174 75 55 chr12 120858600 120858791 -23423698 - L1MC4 LINE L1 -206 7836 7650 2102 130 0 7 chr12 120858791 120859091 -23423398 - AluJb SINE Alu -14 298 1 2305 174 75 55 chr12 120859091 120859405 -23423084 - L1MC4 LINE L1 -392 7650 7321 759 138 49 79 chr12 120859517 120859607 -23422882 - L1MC4a LINE L1 -548 7260 7169 2423 78 0 0 chr12 120859607 120859901 -23422588 - AluY SINE Alu -17 294 1 759 138 49 79 chr12 120859901 120860013 -23422476 - L1MC4a LINE L1 -639 7169 7064 * 1914 173 173 9 chr12 120860011 120860147 -23422342 - L1MA9 LINE L1 0 6312 6200 2204 125 0 0 chr12 120860147 120860443 -23422046 - AluSx SINE Alu -16 296 1 1914 173 173 9 chr12 120860443 120860468 -23422021 - L1MA9 LINE L1 -112 6200 6180 2113 134 0 13 chr12 120860468 120860773 -23421716 - AluSx SINE Alu -11 301 1 1914 173 173 9 chr12 120860773 120861056 -23421433 - L1MA9 LINE L1 -132 6180 5794 2009 104 0 4 chr12 120861056 120861315 -23421174 + AluSx SINE Alu 2 259 -53 455 250 8 0 chr12 120861318 120861446 -23421043 - L1 LINE L1 -993 5153 5025 839 239 173 10 chr12 120861448 120861783 -23420706 - L1MC4 LINE L1 -869 7126 6712 1601 105 231 0 chr12 120861866 120862161 -23420328 + MER47A DNA MER2_type 1 363 -3 2423 169 41 26 chr12 120862179 120862687 -23419802 - L1MD3 LINE L1 -62 7933 7418 1882 158 115 6 chr12 120862687 120863017 -23419472 - MER47A DNA MER2_type 0 366 1 388 250 0 0 chr12 120863033 120863113 -23419376 - MLT1F1 LTR MaLR -442 125 46 3254 191 53 11 chr12 120863135 120863847 -23418642 - L1MC3 LINE L1 -682 7103 6362 2321 93 0 0 chr12 120863986 120864277 -23418212 + AluSx SINE Alu 13 303 -9 311 292 58 17 chr12 120864434 120864554 -23417935 - L2 LINE L2 -2 3311 3187 370 298 25 90 chr12 120864726 120864955 -23417534 - L2 LINE L2 -404 2910 2712 2262 124 0 0 chr12 120864955 120865254 -23417235 + AluSx SINE Alu 1 299 -13 370 298 25 90 chr12 120865254 120865390 -23417099 - L2 LINE L2 -602 2712 2569 903 150 38 0 chr12 120866126 120866286 -23416203 + L1MB1 LINE L1 5991 6156 -12 29 0 0 0 chr12 120866341 120866370 -23416119 + AT_rich Low_complexity Low_complexity 1 29 0 1998 128 13 23 chr12 120866418 120866722 -23415767 - AluSx SINE Alu -10 302 2 1890 133 34 14 chr12 120866752 120867046 -23415443 + AluJo SINE Alu 1 300 -12 2226 116 3 0 chr12 120867046 120867349 -23415140 + AluSx SINE Alu 1 304 -8 2183 130 7 0 chr12 120867677 120867976 -23414513 - AluSx SINE Alu -11 301 1 1059 103 6 86 chr12 120867979 120868154 -23414335 - FRAM SINE Alu -16 160 1 1966 133 3 14 chr12 120868430 120868723 -23413766 + AluSx SINE Alu 7 296 -16 198 0 0 0 chr12 120869398 120869420 -23413069 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2219 99 0 3 chr12 120869548 120869854 -23412635 + AluSx SINE Alu 1 305 0 580 176 86 122 chr12 120870112 120870334 -23412155 + MER58C DNA MER1_type 1 214 -1 2237 98 3 0 chr12 120871291 120871576 -23410913 - AluSg SINE Alu -23 287 2 227 292 15 0 chr12 120872250 120872315 -23410174 + MIR SINE MIR 31 96 -112 1994 92 64 27 chr12 120872471 120872766 -23409723 + AluSp SINE Alu 3 308 -5 21 0 0 0 chr12 120873225 120873246 -23409243 + AT_rich Low_complexity Low_complexity 1 21 0 463 219 158 63 chr12 120873684 120874031 -23408458 - MLT1H LTR MaLR -16 533 154 423 0 0 0 chr12 120874031 120874078 -23408411 + (ATG)n Simple_repeat Simple_repeat 1 47 0 245 186 17 51 chr12 120874113 120874172 -23408317 - MLT1H LTR MaLR -391 158 102 666 139 8 66 chr12 120877262 120877384 -23405105 + FLAM_A SINE Alu 1 115 -18 345 100 0 0 chr12 120877427 120877477 -23405012 + (CA)n Simple_repeat Simple_repeat 1 50 0 2057 138 0 26 chr12 120877874 120878185 -23404304 + AluSx SINE Alu 1 303 -9 2071 100 0 29 chr12 120879424 120879704 -23402785 - AluSx SINE Alu -40 272 1 1949 153 7 3 chr12 120879713 120880013 -23402476 - AluSx SINE Alu -10 302 2 180 0 0 0 chr12 120880152 120880172 -23402317 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1581 209 0 7 chr12 120880174 120880457 -23402032 - AluJo SINE Alu -31 281 1 207 250 62 38 chr12 120880774 120880854 -23401635 - L2 LINE L2 0 3313 3232 963 144 56 12 chr12 120881059 120881219 -23401270 + THE1C LTR MaLR 1 167 -208 2429 100 0 0 chr12 120881233 120881544 -23400945 + AluSx SINE Alu 1 311 -1 878 154 7 7 chr12 120881770 120881919 -23400570 - AluJo/FRAM SINE Alu -30 282 134 1898 154 0 22 chr12 120881921 120882240 -23400249 - AluSx SINE Alu 0 312 1 292 297 110 7 chr12 120882254 120882399 -23400090 + L2 LINE L2 2626 2785 -529 404 293 68 37 chr12 120882399 120882590 -23399899 - MER20 DNA MER1_type -22 197 1 1921 115 61 0 chr12 120882663 120882941 -23399548 - AluSx SINE Alu -17 295 1 511 238 61 7 chr12 120882953 120883100 -23399389 + L2 LINE L2 3159 3313 0 334 271 8 51 chr12 120883117 120883235 -23399254 - L2 LINE L2 -314 2999 2887 226 188 14 87 chr12 120883233 120883302 -23399187 - L2 LINE L2 -925 2389 2326 * 344 289 40 7 chr12 120883303 120883455 -23399034 - LTR33 LTR ERVL 0 521 365 1816 184 44 16 chr12 120883468 120883832 -23398657 - MLT1D LTR MaLR -131 374 1 1901 108 93 0 chr12 120883865 120884124 -23398365 + AluSx SINE Alu 1 283 -29 369 0 0 0 chr12 120884122 120884163 -23398326 + (CA)n Simple_repeat Simple_repeat 1 41 0 297 170 0 0 chr12 120884160 120884207 -23398282 + Alu SINE Alu 235 281 -19 414 0 0 0 chr12 120884207 120884253 -23398236 + (CA)n Simple_repeat Simple_repeat 1 46 0 327 288 75 38 chr12 120884295 120884552 -23397937 - LTR33 LTR ERVL -270 253 15 486 238 163 31 chr12 120884553 120884713 -23397776 + MER5A DNA MER1_type 2 182 -7 1691 154 13 50 chr12 120884737 120885035 -23397454 - AluJo SINE Alu -20 292 6 445 230 128 66 chr12 120885847 120886073 -23396416 + MIR SINE MIR 9 248 -14 218 171 0 0 chr12 120886045 120886080 -23396409 + L2 LINE L2 3266 3300 -13 * 4135 107 139 139 chr12 120886145 120887542 -23394947 - pTR5 LTR ERV1 0 2438 66 435 204 121 21 chr12 120887887 120888032 -23394457 + MIR SINE MIR 31 198 -62 2335 109 0 0 chr12 120888055 120888357 -23394132 - AluSx SINE Alu -10 302 1 2041 124 0 3 chr12 120888359 120888641 -23393848 - AluJo SINE Alu -25 287 7 399 325 59 51 chr12 120888656 120888893 -23393596 + L1ME3 LINE L1 5709 5947 -215 2207 123 0 0 chr12 120888929 120889231 -23393258 + AluSx SINE Alu 3 304 -8 2136 110 0 0 chr12 120889231 120889540 -23392949 + HSMAR2 DNA Mariner 47 355 -947 1072 169 0 0 chr12 120889543 120889709 -23392780 + AluSg/x SINE Alu 135 300 -10 5655 106 18 2 chr12 120889709 120890561 -23391928 + HSMAR2 DNA Mariner 350 1214 -88 836 123 0 0 chr12 120890593 120890707 -23391782 + AluJb SINE Alu 191 304 -8 550 103 21 0 chr12 120890707 120890804 -23391685 + HSMAR2 DNA Mariner 1204 1302 0 543 207 9 9 chr12 120890804 120890920 -23391569 - MIR SINE MIR -30 232 117 1395 166 110 42 chr12 120890921 120891258 -23391231 + THE1B LTR MaLR 1 360 -4 1064 184 0 48 chr12 120891393 120891621 -23390868 - MER58B DNA MER1_type -3 338 122 920 165 114 23 chr12 120891621 120891797 -23390692 - AluJb SINE Alu -1 311 120 368 255 10 59 chr12 120891798 120891900 -23390589 - MER58B DNA MER1_type -241 100 4 218 360 99 0 chr12 120891906 120892017 -23390472 + L2 LINE L2 3151 3272 0 324 243 14 0 chr12 120892095 120892169 -23390320 + MER94 DNA DNA 52 126 -8 225 0 0 0 chr12 120892233 120892258 -23390231 + (TG)n Simple_repeat Simple_repeat 2 26 0 897 243 12 0 chr12 120892311 120892484 -23390005 - FAM SINE Alu 0 175 1 751 62 25 43 chr12 120892613 120892774 -23389715 + (TCTA)n Simple_repeat Simple_repeat 2 159 0 1799 242 76 14 chr12 120892804 120893354 -23389135 - L1MC4 LINE L1 -170 7872 7289 664 293 78 70 chr12 120893746 120893880 -23388609 + L2 LINE L2 2576 2708 -606 2301 101 3 10 chr12 120893880 120894186 -23388303 + AluSx SINE Alu 1 304 -8 664 293 78 70 chr12 120894186 120894450 -23388039 + L2 LINE L2 2708 2977 -337 1363 299 55 15 chr12 120894488 120894957 -23387532 - MLT1K LTR MaLR -98 490 3 2408 61 0 3 chr12 120895022 120895315 -23387174 - AluY SINE Alu -19 292 1 2083 121 21 0 chr12 120895318 120895608 -23386881 - AluSx SINE Alu -16 296 1 901 198 6 0 chr12 120895732 120895899 -23386590 - FRAM SINE Alu -11 165 1 1011 154 0 63 chr12 120895919 120895947 -23386542 - AluJb SINE Alu -148 164 136 2309 116 0 0 chr12 120895947 120896257 -23386232 - AluSx SINE Alu -2 310 1 1011 154 0 63 chr12 120896257 120896403 -23386086 - AluJb SINE Alu -176 136 1 26 0 0 0 chr12 120896408 120896434 -23386055 + AT_rich Low_complexity Low_complexity 1 26 0 1796 124 90 11 chr12 120896434 120896701 -23385788 + AluSx SINE Alu 1 288 -24 781 180 7 14 chr12 120896714 120896853 -23385636 + AluJo SINE Alu 2 139 -173 33 0 0 0 chr12 120896927 120896960 -23385529 + AT_rich Low_complexity Low_complexity 1 33 0 276 271 114 36 chr12 120896963 120897103 -23385386 - MIR SINE MIR -56 206 56 362 21 21 0 chr12 120897543 120897590 -23384899 + (TTA)n Simple_repeat Simple_repeat 3 50 0 1369 19 0 0 chr12 120897590 120897745 -23384744 - L1PA3 LINE L1 -18 6137 5983 21 0 0 0 chr12 120897981 120898002 -23384487 + AT_rich Low_complexity Low_complexity 1 21 0 412 263 97 59 chr12 120898250 120898387 -23384102 - MER113 DNA MER1_type? -35 486 339 1678 171 63 30 chr12 120898387 120898749 -23383740 + MLT1A2 LTR MaLR 1 374 0 412 263 97 59 chr12 120898749 120898797 -23383692 - MER113 DNA MER1_type? -182 339 294 2274 113 0 3 chr12 120898850 120899152 -23383337 - AluSx SINE Alu -11 301 1 1013 216 81 8 chr12 120899214 120899450 -23383039 - MIR SINE MIR -7 255 3 21 0 0 0 chr12 120899634 120899655 -23382834 + AT_rich Low_complexity Low_complexity 1 21 0 1158 106 38 12 chr12 120899661 120899821 -23382668 - AluSg/x SINE Alu -27 285 122 1221 85 0 13 chr12 120899861 120900014 -23382475 - AluSq/x SINE Alu -161 151 1 2311 108 0 0 chr12 120900016 120900312 -23382177 - AluSx SINE Alu -16 296 1 803 167 0 0 chr12 120900457 120900583 -23381906 + FRAM SINE Alu 46 171 -5 1673 137 3 94 chr12 120900914 120901090 -23381399 - AluJo SINE Alu -9 303 113 279 0 0 0 chr12 120901090 120901121 -23381368 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2399 67 0 0 chr12 120901121 120901405 -23381084 - AluY SINE Alu -27 284 1 1673 137 3 94 chr12 120901405 120901556 -23380933 - AluJo SINE Alu -197 115 5 330 241 25 10 chr12 120901626 120901832 -23380657 + (CCCTAA)n Simple_repeat Simple_repeat 1 209 0 189 107 0 0 chr12 120901855 120901883 -23380606 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 486 217 42 132 chr12 120901890 120901911 -23380578 - L2 LINE L2 -17 3296 3275 652 278 100 66 chr12 120901911 120902411 -23380078 - LTR33 LTR ERVL -2 519 3 486 217 42 132 chr12 120902411 120902489 -23380000 - L2 LINE L2 -38 3275 3192 2061 113 7 0 chr12 120902489 120902795 -23379694 + AluSx SINE Alu 1 308 0 486 217 42 132 chr12 120902795 120902905 -23379584 - L2 LINE L2 -121 3192 3104 909 200 5 84 chr12 120902916 120903096 -23379393 - MER58A DNA MER1_type -2199 221 59 1849 146 3 27 chr12 120903096 120903391 -23379098 + AluJo SINE Alu 24 311 -1 909 200 5 84 chr12 120903391 120903425 -23379064 - MER58A DNA MER1_type -2361 59 24 392 205 47 71 chr12 120903485 120903612 -23378877 - L2 LINE L2 -246 3067 2944 344 269 23 85 chr12 120903612 120903742 -23378747 - L2 LINE L2 -1 3312 3191 1916 159 3 10 chr12 120904289 120904590 -23377899 - AluJo SINE Alu -10 302 4 856 194 51 0 chr12 120904639 120904814 -23377675 - L1MB5 LINE L1 0 6174 5991 1014 84 0 0 chr12 120904902 120905044 -23377445 + (TTCC)n Simple_repeat Simple_repeat 2 143 0 977 190 0 0 chr12 120905044 120905191 -23377298 - FRAM SINE Alu -162 150 1 813 248 72 84 chr12 120905191 120905503 -23376986 + Charlie8 DNA MER1_type 122 429 -1988 2336 66 0 14 chr12 120905503 120905789 -23376700 - AluSg SINE Alu 0 310 29 813 248 72 84 chr12 120905789 120905904 -23376585 + Charlie8 DNA MER1_type 429 544 -1873 437 268 8 55 chr12 120905981 120906108 -23376381 - MIR3 SINE MIR -83 125 5 183 42 0 0 chr12 120906233 120906257 -23376232 + (A)n Simple_repeat Simple_repeat 1 24 0 260 266 21 32 chr12 120906619 120906713 -23375776 + MIR SINE MIR 35 127 -135 1327 273 41 0 chr12 120906717 120907106 -23375383 + LTR16A LTR ERVL 32 436 -14 205 225 155 28 chr12 120907211 120907282 -23375207 - L2 LINE L2 -2 3311 3232 210 305 42 53 chr12 120907304 120907399 -23375090 - MIR SINE MIR -149 113 20 * 624 304 20 36 chr12 120907383 120907630 -23374859 + MIR SINE MIR 20 262 0 1718 188 10 0 chr12 120907729 120908017 -23374472 - AluJb SINE Alu -18 294 4 1303 111 11 0 chr12 120908029 120908209 -23374280 - AluSx SINE Alu -4 308 127 344 333 0 0 chr12 120908235 120908325 -23374164 - L1MC4 LINE L1 -1339 6703 6614 934 121 0 0 chr12 120908334 120908458 -23374031 - AluSx SINE Alu -189 124 1 971 278 69 95 chr12 120908475 120908909 -23373580 - L2 LINE L2 -23 3290 2854 4156 138 9 2 chr12 120908909 120909414 -23373075 + MER41B LTR ERV1 1 513 -122 2171 88 51 0 chr12 120909414 120909710 -23372779 - AluY SINE Alu 0 311 1 4156 138 9 2 chr12 120909710 120909834 -23372655 + MER41B LTR ERV1 513 635 0 971 278 69 95 chr12 120909834 120909990 -23372499 - L2 LINE L2 -459 2854 2695 572 175 5 16 chr12 120910306 120910483 -23372006 + CT-rich Low_complexity Low_complexity 1 175 0 2198 121 3 0 chr12 120910483 120910773 -23371716 - AluSx SINE Alu -21 291 1 204 214 0 0 chr12 120910896 120910952 -23371537 + CT-rich Low_complexity Low_complexity 2 57 0 1228 154 0 5 chr12 120911288 120911476 -23371013 - AluJo SINE Alu -22 290 104 2415 78 3 0 chr12 120911770 120912063 -23370426 - AluSp SINE Alu -19 294 1 1661 247 77 6 chr12 120912271 120912853 -23369636 - MER115 DNA AcHobo -8 685 33 2318 103 3 3 chr12 120913030 120913332 -23369157 + AluSx SINE Alu 1 302 -10 2048 154 0 3 chr12 120913659 120913958 -23368531 - AluJo SINE Alu -14 298 1 793 273 144 16 chr12 120913994 120914430 -23368059 - LTR33 LTR ERVL -20 501 10 527 269 19 71 chr12 120914582 120914794 -23367695 - Charlie8 DNA MER1_type -2195 222 22 2102 134 13 0 chr12 120914870 120915175 -23367314 - AluSx SINE Alu -3 309 1 1035 165 43 101 chr12 120915365 120915523 -23366966 - MLT1D LTR MaLR 0 505 339 2306 97 10 16 chr12 120915523 120915832 -23366657 - AluSx SINE Alu -5 307 1 1035 165 43 101 chr12 120915832 120915891 -23366598 - MLT1D LTR MaLR -166 339 328 3918 106 2 9 chr12 120915891 120916422 -23366067 - MER1A DNA MER1_type 0 527 1 1035 165 43 101 chr12 120916422 120916527 -23365962 - MLT1D LTR MaLR -177 328 219 198 0 0 0 chr12 120916530 120916552 -23365937 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 387 0 0 0 chr12 120916551 120916594 -23365895 + (TG)n Simple_repeat Simple_repeat 2 44 0 870 130 0 0 chr12 120916595 120916710 -23365779 - AluJb SINE Alu -26 286 172 472 169 0 0 chr12 120916720 120916803 -23365686 - MLT1D LTR MaLR -446 180 98 1826 156 0 7 chr12 120916829 120916983 -23365506 - AluJb SINE Alu -38 274 121 201 39 0 0 chr12 120916983 120917009 -23365480 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1826 156 0 7 chr12 120917009 120917130 -23365359 - AluJb SINE Alu -191 121 1 526 128 0 128 chr12 120917134 120917259 -23365230 - MLT1D LTR MaLR -396 109 1 261 355 36 0 chr12 120917282 120917392 -23365097 + MIR SINE MIR 129 242 -20 183 196 65 109 chr12 120917416 120917508 -23364981 + MIR SINE MIR 89 176 -86 504 278 95 69 chr12 120917533 120917802 -23364687 - L2 LINE L2 0 3313 3034 2171 118 47 0 chr12 120917802 120918099 -23364390 + AluSx SINE Alu 1 311 -1 504 278 95 69 chr12 120918099 120918135 -23364354 - L2 LINE L2 -279 3034 3000 191 219 0 62 chr12 120918114 120918178 -23364311 - L2 LINE L2 -546 2768 2709 * 1081 182 5 10 chr12 120918598 120918790 -23363699 + AluSg/x SINE Alu 110 300 -12 2098 139 0 0 chr12 120919125 120919426 -23363063 + AluJb SINE Alu 1 301 -11 360 224 240 16 chr12 120919464 120919589 -23362900 - MIR SINE MIR -62 200 48 216 67 0 0 chr12 120919626 120919656 -23362833 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2842 69 6 0 chr12 120919656 120920020 -23362469 - L1PA7 LINE L1 -11 6143 5778 1583 238 120 48 chr12 120920020 120920761 -23361728 + L2 LINE L2 2517 3311 -2 371 143 196 80 chr12 120920819 120920931 -23361558 - L1M2 LINE L1 -648 5514 5411 1985 148 0 26 chr12 120921406 120921711 -23360778 - AluJb SINE Alu -15 297 1 521 314 0 15 chr12 120921885 120922022 -23360467 - MIR3 SINE MIR -32 176 42 1953 155 0 22 chr12 120922045 120922362 -23360127 + AluJo SINE Alu 1 310 -2 626 194 45 30 chr12 120922414 120922615 -23359874 + MER113 DNA MER1_type? 45 248 -273 750 220 12 0 chr12 120922708 120922876 -23359613 + MER113 DNA MER1_type? 264 433 -88 414 226 108 61 chr12 120923260 120923472 -23359017 + LTR45 LTR ERV1 304 525 0 225 204 19 19 chr12 120923760 120923814 -23358675 + GA-rich Low_complexity Low_complexity 3 56 0 602 237 161 107 chr12 120923845 120924011 -23358478 + MLT1J LTR MaLR 1 157 -354 1944 168 0 3 chr12 120924011 120924314 -23358175 - AluJb SINE Alu -10 302 1 602 237 161 107 chr12 120924314 120924349 -23358140 + MLT1J LTR MaLR 157 189 -322 1789 141 6 48 chr12 120924349 120924661 -23357828 + AluJo SINE Alu 1 299 -13 602 237 161 107 chr12 120924661 120924935 -23357554 + MLT1J LTR MaLR 189 503 -8 252 303 15 0 chr12 120924960 120925026 -23357463 + MIR SINE MIR 30 96 -112 924 144 0 0 chr12 120926431 120926563 -23355926 - FLAM_C SINE Alu -1 132 1 2047 208 44 11 chr12 120926764 120927197 -23355292 + MER41B LTR ERV1 162 608 -27 2119 142 0 0 chr12 120927326 120927621 -23354868 - AluJb SINE Alu -17 295 1 881 203 0 6 chr12 120927627 120927785 -23354704 - FRAM SINE Alu -7 159 3 2788 196 29 24 chr12 120927787 120928410 -23354079 - L1ME3A LINE L1 -2 6168 5543 2071 130 143 11 chr12 120928624 120929002 -23353487 + MSTA LTR MaLR 1 428 0 2368 92 0 16 chr12 120929431 120929735 -23352754 + AluSx SINE Alu 1 299 -13 1028 308 160 23 chr12 120929848 120930132 -23352357 + L2 LINE L2 2383 2627 -686 1774 169 49 0 chr12 120930132 120930416 -23352073 + AluJb SINE Alu 1 298 -14 1028 308 160 23 chr12 120930416 120930448 -23352041 + L2 LINE L2 2627 2653 -660 1408 246 95 39 chr12 120930448 120930912 -23351577 + LTR16C LTR ERVL 2 491 0 1028 308 160 23 chr12 120930912 120931375 -23351114 + L2 LINE L2 2653 3271 -42 220 180 112 67 chr12 120931380 120931469 -23351020 + MER91C DNA MER1_type 26 118 -22 3148 199 48 14 chr12 120931991 120932209 -23350280 - L1ME1 LINE L1 -5 6161 5952 2213 117 7 0 chr12 120932209 120932508 -23349981 + AluSx SINE Alu 1 301 -11 3148 199 48 14 chr12 120932508 120933004 -23349485 - L1ME1 LINE L1 -214 5952 5423 339 44 0 0 chr12 120933005 120933050 -23349439 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1329 112 5 16 chr12 120933053 120933240 -23349249 - AluSg/x SINE Alu -25 285 101 591 209 34 73 chr12 120933241 120933289 -23349200 - L1ME1 LINE L1 -733 5433 5385 1885 155 10 14 chr12 120933289 120933586 -23348903 + AluJb SINE Alu 3 298 -14 591 209 34 73 chr12 120933586 120933714 -23348775 - L1ME1 LINE L1 -781 5385 5264 818 189 0 100 chr12 120933882 120933985 -23348504 - MER5A DNA MER1_type -8 181 104 1842 131 81 34 chr12 120933985 120934343 -23348146 + THE1C LTR MaLR 1 375 0 818 189 0 100 chr12 120934343 120934429 -23348060 - MER5A DNA MER1_type -85 104 11 1588 190 30 17 chr12 120934430 120934725 -23347764 + AluJo SINE Alu 3 301 -11 363 251 49 71 chr12 120935040 120935170 -23347319 + Charlie8 DNA MER1_type 1 128 -202 1426 133 0 127 chr12 120935170 120935519 -23346970 + AluJb SINE Alu 1 308 0 363 251 49 71 chr12 120935519 120935570 -23346919 + Charlie8 DNA MER1_type 128 179 -151 381 220 121 21 chr12 120935630 120935771 -23346718 + LTR33 LTR ERVL 349 503 -18 208 308 110 0 chr12 120935864 120935955 -23346534 + MIR SINE MIR 102 202 -60 541 201 47 181 chr12 120936157 120936234 -23346255 - MIR SINE MIR 0 262 176 2166 108 0 0 chr12 120936234 120936531 -23345958 + AluSq SINE Alu 1 297 -16 765 178 0 8 chr12 120936534 120936663 -23345826 - AluJo/FLAM SINE Alu -173 129 2 541 201 47 181 chr12 120936663 120936718 -23345771 - MIR SINE MIR -88 174 113 2103 125 0 0 chr12 120936718 120937022 -23345467 - AluSx SINE Alu -8 304 1 541 201 47 181 chr12 120937022 120937182 -23345307 - MIR SINE MIR -149 113 5 612 266 96 37 chr12 120937366 120937637 -23344852 + MLT1K LTR MaLR 151 437 -151 2021 115 38 0 chr12 120937871 120938158 -23344331 - AluSx SINE Alu -14 298 1 1285 178 33 124 chr12 120938231 120938562 -23343927 + AluJo SINE Alu 2 302 0 1159 152 5 5 chr12 120938762 120938959 -23343530 + AluJb SINE Alu 72 268 -44 212 31 62 0 chr12 120938973 120939005 -23343484 + A-rich Low_complexity Low_complexity 1 34 0 210 246 0 18 chr12 120939174 120939231 -23343258 + GA-rich Low_complexity Low_complexity 4 59 0 1077 67 22 17 chr12 120939500 120939679 -23342810 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 385 66 33 0 chr12 120939679 120939740 -23342749 + (TC)n Simple_repeat Simple_repeat 1 63 0 1548 191 14 0 chr12 120939740 120940023 -23342466 - AluJb SINE Alu -25 287 1 265 300 17 13 chr12 120940060 120940149 -23342340 + MIR SINE MIR 37 127 -81 819 160 0 14 chr12 120940149 120940293 -23342196 - AluJo SINE Alu -170 142 1 258 289 22 22 chr12 120940296 120940386 -23342103 - Charlie8 DNA MER1_type -2301 116 27 393 214 34 11 chr12 120940508 120940597 -23341892 - MIR SINE MIR -1 261 171 245 284 46 9 chr12 120940793 120940902 -23341587 - L2 LINE L2 -338 2976 2864 266 242 11 34 chr12 120940950 120941258 -23341231 + G-rich Low_complexity Low_complexity 1 300 0 339 170 7 37 chr12 120941262 120941397 -23341092 + GA-rich Low_complexity Low_complexity 1 131 0 221 259 0 32 chr12 120941458 120941643 -23340846 + GA-rich Low_complexity Low_complexity 1 179 0 259 329 0 0 chr12 120941662 120941747 -23340742 + G-rich Low_complexity Low_complexity 3 87 0 282 251 0 16 chr12 120941748 120941931 -23340558 + GA-rich Low_complexity Low_complexity 1 180 0 350 179 5 49 chr12 120941952 120942136 -23340353 + GA-rich Low_complexity Low_complexity 1 176 0 206 269 0 0 chr12 120942326 120942378 -23340111 + (CGG)n Simple_repeat Simple_repeat 3 54 0 725 284 67 8 chr12 120943095 120943334 -23339155 - MIR SINE MIR -8 254 2 1398 103 0 5 chr12 120943408 120943603 -23338886 - AluSx SINE Alu -118 194 1 687 197 8 0 chr12 120943607 120943739 -23338750 - FLAM_C SINE Alu 0 133 1 26 50 0 0 chr12 120943917 120943957 -23338532 + AT_rich Low_complexity Low_complexity 1 40 0 995 163 0 0 chr12 120943978 120944144 -23338345 - AluJb SINE Alu 0 312 147 4485 112 5 2 chr12 120944144 120944777 -23337712 - MER41B LTR ERV1 0 635 1 882 158 0 0 chr12 120944794 120944927 -23337562 - FLAM_C SINE Alu 0 133 1 229 217 14 0 chr12 120945497 120945566 -23336923 + A-rich Low_complexity Low_complexity 1 70 0 563 272 53 77 chr12 120945803 120946049 -23336440 - MER102a DNA MER1_type -2 328 89 318 306 97 8 chr12 120946677 120946801 -23335688 - HAL1 LINE L1 -10 2497 2363 1056 158 0 11 chr12 120946801 120946984 -23335505 - AluJb SINE Alu -1 311 131 208 333 10 21 chr12 120947082 120947178 -23335311 - L2 LINE L2 -4 3268 3174 339 303 0 8 chr12 120947179 120947311 -23335178 + CT-rich Low_complexity Low_complexity 2 132 0 2551 35 0 10 chr12 120947479 120947790 -23334699 - AluY SINE Alu -3 308 1 2546 86 51 11 chr12 120948210 120948560 -23333929 - THE1B LTR MaLR 0 364 1 752 124 0 0 chr12 120948666 120948771 -23333718 - AluJb SINE Alu -194 118 14 588 283 23 12 chr12 120948869 120949042 -23333447 + MIR3 SINE MIR 23 197 -11 332 212 144 27 chr12 120949079 120949225 -23333264 - L1ME4a LINE L1 -2 6119 5957 779 245 0 0 chr12 120949341 120949496 -23332993 - FRAM SINE Alu -23 153 1 1802 127 0 52 chr12 120949542 120949833 -23332656 - AluJb SINE Alu -23 289 14 298 323 42 0 chr12 120949841 120950008 -23332481 - L1ME4a LINE L1 -295 5826 5653 540 261 155 26 chr12 120950302 120950528 -23331961 - MIR SINE MIR 0 262 8 438 333 5 59 chr12 120950668 120950787 -23331702 + MIR3 SINE MIR 32 139 -69 2007 134 0 3 chr12 120950787 120951085 -23331404 + AluSx SINE Alu 1 297 -15 438 333 5 59 chr12 120951085 120951151 -23331338 + MIR3 SINE MIR 139 207 -1 1906 163 54 36 chr12 120951900 120952419 -23330070 - MLT2A2 LTR ERVL 0 554 24 2187 101 0 7 chr12 120952538 120952835 -23329654 + AluSx SINE Alu 2 296 -16 372 296 69 38 chr12 120952949 120953108 -23329381 - MER5A DNA MER1_type -1 188 25 753 314 111 19 chr12 120953274 120953698 -23328791 - L2 LINE L2 -18 3295 2833 570 284 97 6 chr12 120953783 120953959 -23328530 - MIR SINE MIR -70 192 1 336 256 58 10 chr12 120954270 120954422 -23328067 + L1M4 LINE L1 2857 3016 -3130 674 232 39 61 chr12 120954443 120954624 -23327865 + MIR SINE MIR 3 179 -83 498 294 84 16 chr12 120954603 120954903 -23327586 + L2 LINE L2 2922 3313 0 * 188 333 15 0 chr12 120954930 120954996 -23327493 + MIR SINE MIR 188 254 -8 248 204 0 0 chr12 120955210 120955259 -23327230 + L2 LINE L2 3265 3313 0 2529 105 22 14 chr12 120955317 120955678 -23326811 - THE1B LTR MaLR 0 364 1 449 278 51 104 chr12 120955830 120956261 -23326228 - L2 LINE L2 -51 3221 2814 1140 248 146 27 chr12 120956477 120956881 -23325608 + L2 LINE L2 2857 3308 -5 2141 126 0 0 chr12 120956893 120957194 -23325295 + AluSx SINE Alu 9 309 -3 343 324 63 19 chr12 120957204 120957411 -23325078 - MIR SINE MIR -35 227 12 187 302 63 0 chr12 120957437 120957500 -23324989 + MIR SINE MIR 51 117 -91 340 260 57 50 chr12 120957704 120957888 -23324601 + MER102a DNA MER1_type 19 216 -114 1252 166 45 79 chr12 120957910 120958200 -23324289 - AluJo SINE Alu -30 282 3 1104 149 157 44 chr12 120958220 120958468 -23324021 - AluJo SINE Alu -30 282 7 252 214 135 11 chr12 120958492 120958581 -23323908 + MER102a DNA MER1_type 231 330 0 1294 146 19 5 chr12 120958973 120959179 -23323310 + MER2 DNA MER2_type 1 209 -136 924 149 0 0 chr12 120959179 120959320 -23323169 + AluJb SINE Alu 1 141 -171 396 204 183 15 chr12 120959371 120959419 -23323070 + MER2 DNA MER2_type 186 225 -120 1948 123 14 0 chr12 120959419 120959703 -23322786 - AluSx SINE Alu -24 288 1 396 204 183 15 chr12 120959703 120959791 -23322698 + MER2 DNA MER2_type 225 345 0 613 284 77 35 chr12 120959878 120960072 -23322417 + MLT1I LTR MaLR 82 288 -121 1614 203 28 25 chr12 120960072 120960436 -23322053 + MLT1A1 LTR MaLR 1 365 0 613 284 77 35 chr12 120960436 120960564 -23321925 + MLT1I LTR MaLR 288 409 0 212 286 65 13 chr12 120960787 120960864 -23321625 - MIR SINE MIR -104 158 78 691 327 70 44 chr12 120960888 120961160 -23321329 + L2 LINE L2 2993 3271 -1 433 368 49 0 chr12 120961163 120961326 -23321163 + MIR3 SINE MIR 38 208 0 323 273 0 0 chr12 120961403 120961469 -23321020 - MIR SINE MIR -184 78 13 235 200 12 12 chr12 120961521 120961606 -23320883 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 409 293 16 8 chr12 120961631 120961754 -23320735 - L2 LINE L2 0 3313 3190 259 279 16 0 chr12 120961916 120961977 -23320512 - L2 LINE L2 0 3272 3211 1001 255 29 8 chr12 120962094 120962337 -23320152 + MIR SINE MIR 1 248 -14 1317 226 69 14 chr12 120962540 120962889 -23319600 + LTR52 LTR ERVL 17 384 -37 1222 181 0 18 chr12 120963224 120963450 -23319039 - AluJo SINE Alu -10 302 81 1659 247 38 44 chr12 120963455 120964111 -23318378 - L1M4 LINE L1 -1156 4990 4339 226 281 12 24 chr12 120964173 120964255 -23318234 + L1ME4a LINE L1 5945 6025 -96 1265 182 44 69 chr12 120964385 120964703 -23317786 + AluJb SINE Alu 1 310 -2 552 278 36 37 chr12 120965082 120965402 -23317087 - LTR16C LTR ERVL -4 487 113 310 276 13 0 chr12 120965741 120965817 -23316672 + MIR SINE MIR 176 252 -10 21 0 0 0 chr12 120966535 120966556 -23315933 + AT_rich Low_complexity Low_complexity 1 21 0 477 340 37 5 chr12 120966965 120967156 -23315333 + MIR SINE MIR 66 262 0 346 234 48 48 chr12 120967501 120967648 -23314841 + MIR SINE MIR 16 145 -63 1564 123 4 0 chr12 120967650 120967878 -23314611 - THE1C-int LTR MaLR -1351 229 1 2229 110 55 27 chr12 120967878 120968243 -23314246 - THE1C LTR MaLR 0 375 1 227 289 56 33 chr12 120968246 120968336 -23314153 + MIR SINE MIR 171 262 0 262 307 134 22 chr12 120968504 120968683 -23313806 + L1ME3A LINE L1 5746 5944 -226 1911 134 0 29 chr12 120968734 120969040 -23313449 + AluJb SINE Alu 1 297 -15 992 151 12 17 chr12 120969720 120969892 -23312597 + FRAM SINE Alu 1 164 -12 1348 208 76 40 chr12 120969908 120970361 -23312128 - MER39 LTR ERV1 -1 700 10 3035 164 30 9 chr12 120970393 120970934 -23311555 - MER41C LTR ERV1 -2 552 1 437 258 8 31 chr12 120971182 120971310 -23311179 - MIR SINE MIR -131 131 7 242 232 205 18 chr12 120971514 120971626 -23310863 - MIR SINE MIR -6 256 124 1912 200 112 54 chr12 120971637 120972173 -23310316 - MLT1F1 LTR MaLR 0 567 1 1938 144 0 0 chr12 120972177 120972499 -23309990 + AluSx SINE Alu 1 312 0 229 311 78 11 chr12 120972557 120972647 -23309842 - MIR SINE MIR -150 112 17 577 288 16 52 chr12 120973347 120973390 -23309099 + MIR SINE MIR 61 104 -158 2015 106 134 53 chr12 120973390 120973461 -23309028 - MSTA LTR MaLR 0 428 364 1450 136 33 0 chr12 120973461 120973704 -23308785 - AluSx SINE Alu 0 312 62 2015 106 134 53 chr12 120973704 120974028 -23308461 - MSTA LTR MaLR -64 364 1 577 288 16 52 chr12 120974028 120974175 -23308314 + MIR SINE MIR 104 244 -18 388 313 47 0 chr12 120974226 120974354 -23308135 + MIR3 SINE MIR 74 207 -1 2106 111 3 0 chr12 120975194 120975500 -23306989 - AluSq SINE Alu -6 307 1 207 261 0 0 chr12 120975513 120975559 -23306930 + L2 LINE L2 3263 3308 -5 688 219 53 21 chr12 120975820 120976007 -23306482 - Charlie5 DNA MER1_type -178 2434 2242 457 246 0 33 chr12 120976024 120976146 -23306343 - Charlie5 DNA MER1_type -2492 120 3 797 193 33 7 chr12 120976277 120976427 -23306062 - AluJo SINE Alu -133 179 26 353 304 200 45 chr12 120976429 120976804 -23305685 + L2 LINE L2 2821 3253 -19 787 249 123 85 chr12 120977024 120977310 -23305179 + L2 LINE L2 2727 3001 -312 2122 117 0 0 chr12 120977310 120977610 -23304879 + AluSx SINE Alu 6 305 -7 787 249 123 85 chr12 120977610 120977712 -23304777 + L2 LINE L2 3001 3098 -215 2094 105 0 16 chr12 120977712 120978016 -23304473 - AluY SINE Alu -8 303 5 787 249 123 85 chr12 120978016 120978194 -23304295 + L2 LINE L2 3098 3312 -1 306 163 0 0 chr12 120978363 120978412 -23304077 - L1ME1 LINE L1 -57 6109 6061 1778 112 0 27 chr12 120978571 120978830 -23303659 - AluSx SINE Alu -60 252 1 1971 133 0 35 chr12 120979644 120979960 -23302529 - AluJb SINE Alu -7 305 1 702 315 22 9 chr12 120980097 120980329 -23302160 - MIR SINE MIR -1 261 27 244 257 40 27 chr12 120980432 120980506 -23301983 + MIR SINE MIR 7 81 -181 1554 201 116 19 chr12 120980506 120980738 -23301751 + MLT1D LTR MaLR 1 209 -296 1439 181 13 40 chr12 120980738 120981037 -23301452 + AluJo SINE Alu 1 291 -21 1554 201 116 19 chr12 120981037 120981338 -23301151 + MLT1D LTR MaLR 209 497 -8 511 248 22 22 chr12 120981344 120981481 -23301008 + MIR SINE MIR 76 212 -50 1847 142 6 22 chr12 120981486 120981802 -23300687 + AluJb SINE Alu 1 311 -1 798 174 0 0 chr12 120981881 120982013 -23300476 - FRAM SINE Alu -24 152 21 243 270 45 22 chr12 120982176 120982265 -23300224 + L2 LINE L2 3221 3311 -2 529 219 207 24 chr12 120982834 120983003 -23299486 + MIR SINE MIR 48 247 -15 2281 90 0 0 chr12 120983224 120983525 -23298964 - AluSx SINE Alu -5 307 7 367 282 0 12 chr12 120983702 120983787 -23298702 - MIR SINE MIR -83 125 42 249 108 0 0 chr12 120984525 120984562 -23297927 + (CTCA)n Simple_repeat Simple_repeat 4 40 0 203 217 167 17 chr12 120984722 120984782 -23297707 - L2 LINE L2 -188 3084 3016 1072 140 0 0 chr12 120984784 120984948 -23297541 - AluJ SINE Alu -12 300 137 251 289 44 39 chr12 120985688 120985774 -23296715 - L1MC4a LINE L1 -1849 5959 5875 3746 165 32 21 chr12 120985774 120986331 -23296158 - L1MB8 LINE L1 -6 6172 5623 477 0 0 0 chr12 120986331 120986384 -23296105 + (TG)n Simple_repeat Simple_repeat 2 54 0 2181 109 11 0 chr12 120986384 120986667 -23295822 - AluSq SINE Alu -27 286 1 3746 165 32 21 chr12 120986667 120986852 -23295637 - L1MB8 LINE L1 -554 5624 5421 251 289 44 39 chr12 120986852 120986969 -23295520 - L1MC4a LINE L1 -1933 5875 5755 824 288 137 17 chr12 120986972 120987316 -23295173 - MLT1K LTR MaLR 0 588 204 1174 235 69 81 chr12 120987485 120988038 -23294451 + L2 LINE L2 2007 2607 -707 849 174 0 0 chr12 120988095 120988227 -23294262 - AluJ SINE Alu -170 132 1 44118 28 22 2 chr12 120988282 120994313 -23288176 + L1PA2 LINE L1 4 6155 0 208 240 28 56 chr12 120994316 120994495 -23287994 + (TTATA)n Simple_repeat Simple_repeat 2 175 0 * 285 213 26 58 chr12 120994434 120994589 -23287900 + (TATAA)n Simple_repeat Simple_repeat 5 154 0 1188 241 61 37 chr12 120994624 120994874 -23287615 - L2 LINE L2 -17 3296 3053 2179 126 121 23 chr12 120994874 120995262 -23287227 - MSTA LTR MaLR -2 426 1 1188 241 61 37 chr12 120995262 120995546 -23286943 - L2 LINE L2 -260 3053 2748 1115 159 80 110 chr12 120995549 120995850 -23286639 + AluJo SINE Alu 18 309 -3 386 214 136 48 chr12 120995852 120996058 -23286431 - L2 LINE L2 -560 2754 2531 1531 172 0 29 chr12 120996550 120996823 -23285666 - AluJo SINE Alu -9 303 39 231 125 0 0 chr12 120996846 120996886 -23285603 + (TAA)n Simple_repeat Simple_repeat 2 41 0 592 256 35 15 chr12 120996892 120997091 -23285398 - MIR SINE MIR -13 249 47 503 162 10 0 chr12 120997175 120997274 -23285215 + (TCCA)n Simple_repeat Simple_repeat 1 100 0 1257 208 92 32 chr12 120997390 120997737 -23284752 - LTR16A1 LTR ERVL -31 426 59 317 328 49 8 chr12 120997817 120997939 -23284550 - L2 LINE L2 0 3272 3146 1709 159 10 40 chr12 120998607 120998908 -23283581 - AluJb SINE Alu -20 292 1 997 206 9 40 chr12 120998926 120999023 -23283466 - L1PB4 LINE L1 -21 6135 6036 2543 110 5 27 chr12 120999023 120999395 -23283094 + THE1B LTR MaLR 1 364 0 997 206 9 40 chr12 120999395 120999520 -23282969 - L1PB4 LINE L1 -120 6036 5920 505 151 29 1 chr12 120999760 120999849 -23282640 + MER20 DNA MER1_type 29 110 -109 257 333 39 0 chr12 120999866 120999968 -23282521 - L2 LINE L2 -427 2887 2782 1796 149 25 48 chr12 120999995 121000310 -23282179 + AluJo SINE Alu 1 308 -4 2869 99 33 21 chr12 121000386 121000809 -23281680 + MSTC LTR MaLR 1 428 0 209 254 209 0 chr12 121000901 121000968 -23281521 + MIR SINE MIR 33 113 -149 2396 64 0 0 chr12 121001151 121001481 -23281008 + AluY SINE Alu 1 330 0 1154 123 35 0 chr12 121001481 121001651 -23280838 + AluY SINE Alu 123 298 -13 1327 201 72 54 chr12 121001715 121002158 -23280331 - MER113 DNA MER1_type? -1 520 70 1102 185 70 0 chr12 121002158 121002358 -23280131 - MER58A DNA MER1_type 0 224 11 731 209 148 22 chr12 121002386 121002616 -23279873 + MIR SINE MIR 2 260 -2 1590 256 42 0 chr12 121003100 121003483 -23279006 - MLT1J LTR MaLR -44 467 69 540 310 24 10 chr12 121003494 121003702 -23278787 + MER20B DNA MER1_type 1 214 -5 395 239 35 9 chr12 121004390 121004503 -23277986 - L1MC5 LINE L1 -60 7901 7786 2403 141 53 10 chr12 121005034 121005446 -23277043 + MSTB1 LTR MaLR 1 430 -2 422 143 48 38 chr12 121005674 121005779 -23276710 + MER103 DNA DNA 49 154 -12 2326 106 56 11 chr12 121006379 121006738 -23275751 + L1PA11 LINE L1 5790 6164 -10 459 274 48 7 chr12 121006977 121007123 -23275366 - MIR SINE MIR -74 188 37 2343 104 0 13 chr12 121007123 121007440 -23275049 + AluSq SINE Alu 1 313 0 253 267 22 22 chr12 121007530 121007620 -23274869 + CT-rich Low_complexity Low_complexity 2 91 0 2110 126 0 29 chr12 121008472 121008782 -23273707 - AluSx SINE Alu -11 301 1 735 250 61 22 chr12 121008916 121009144 -23273345 - MIR SINE MIR -6 256 20 207 317 122 0 chr12 121009128 121009210 -23273279 - L2 LINE L2 -24 3248 3157 * 474 227 77 96 chr12 121009265 121009437 -23273052 - MIR SINE MIR -6 256 87 949 132 44 22 chr12 121009437 121009619 -23272870 + MER53 DNA DNA 1 186 -3 474 227 77 96 chr12 121009619 121009666 -23272823 - MIR SINE MIR -175 87 41 900 225 31 27 chr12 121009813 121009936 -23272553 - MIR SINE MIR 0 262 141 1015 171 57 19 chr12 121009936 121010147 -23272342 + MER20 DNA MER1_type 1 219 0 900 225 31 27 chr12 121010147 121010281 -23272208 - MIR SINE MIR -121 141 4 189 419 8 0 chr12 121010281 121010397 -23272092 - MIR SINE MIR -64 144 28 193 287 218 0 chr12 121010555 121010656 -23271833 - L2 LINE L2 0 3272 3150 1265 244 92 51 chr12 121010713 121010858 -23271631 - LTR16C LTR ERVL -1 490 352 3489 103 51 0 chr12 121010858 121011384 -23271105 + L1PB4 LINE L1 5601 6153 -3 1265 244 92 51 chr12 121011384 121011627 -23270862 - LTR16C LTR ERVL -139 352 86 232 151 245 0 chr12 121011693 121011746 -23270743 - MIR SINE MIR -10 252 187 527 322 35 26 chr12 121011952 121012182 -23270307 + MLT1K LTR MaLR 355 586 -2 504 194 45 117 chr12 121013000 121013222 -23269267 + MIR SINE MIR 54 259 -3 428 308 159 24 chr12 121013232 121013566 -23268923 - MLT1L LTR MaLR -10 605 227 262 270 0 0 chr12 121013741 121013804 -23268685 + MIR SINE MIR 77 139 -69 238 337 22 0 chr12 121013821 121013910 -23268579 - L2 LINE L2 -16 3297 3207 483 245 147 0 chr12 121014333 121014476 -23268013 + MIR SINE MIR 15 178 -84 848 227 169 56 chr12 121014500 121014675 -23267814 - L2 LINE L2 -20 3293 3139 303 28 0 0 chr12 121014675 121014711 -23267778 + (TG)n Simple_repeat Simple_repeat 2 37 0 848 227 169 56 chr12 121014711 121014931 -23267558 - L2 LINE L2 -174 3139 2853 317 289 0 0 chr12 121014928 121015011 -23267478 + MIR SINE MIR 180 262 0 * 478 241 179 29 chr12 121015193 121015533 -23266956 - L1ME4a LINE L1 -108 6013 5623 1828 152 3 41 chr12 121015536 121015852 -23266637 + AluJo SINE Alu 1 304 -8 1855 156 25 0 chr12 121015902 121016198 -23266291 - AluSx SINE Alu 0 303 1 279 261 0 0 chr12 121016523 121016592 -23265897 + MIR SINE MIR 70 138 -70 204 259 0 19 chr12 121016714 121016768 -23265721 + L2 LINE L2 3186 3238 -75 1830 172 86 14 chr12 121016772 121017132 -23265357 - MLT1B LTR MaLR 0 390 5 337 364 7 7 chr12 121017304 121017458 -23265031 - MIR SINE MIR -107 155 2 272 232 84 71 chr12 121017641 121017796 -23264693 + L2 LINE L2 3152 3308 -5 1837 162 3 7 chr12 121017818 121018115 -23264374 - AluJo SINE Alu -15 297 2 1751 153 0 31 chr12 121018168 121018462 -23264027 + AluJb SINE Alu 6 290 -22 207 0 0 0 chr12 121018470 121018493 -23263996 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3161 156 29 20 chr12 121018654 121019250 -23263239 - L1MB4 LINE L1 0 6180 5580 1794 154 24 14 chr12 121019278 121019570 -23262919 + AluJo SINE Alu 1 295 -17 201 121 0 0 chr12 121019759 121019792 -23262697 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 272 282 45 27 chr12 121019793 121019903 -23262586 - L2 LINE L2 0 3272 3161 16041 113 44 38 chr12 121019907 121020194 -23262295 - Tigger3(Golem) DNA MER2_type 0 3029 2745 2059 98 73 0 chr12 121020194 121020480 -23262009 + AluSx SINE Alu 1 307 -5 16041 113 44 38 chr12 121020480 121020727 -23261762 - Tigger3(Golem) DNA MER2_type -284 2745 2501 692 83 147 0 chr12 121020727 121020836 -23261653 - L1PA14 LINE L1 -11 6150 6026 16041 113 44 38 chr12 121020836 121022649 -23259840 - Tigger3(Golem) DNA MER2_type -528 2501 662 2257 110 7 7 chr12 121022649 121022958 -23259531 - AluSx SINE Alu -3 309 1 16041 113 44 38 chr12 121022958 121023295 -23259194 - Tigger3(Golem) DNA MER2_type -2367 662 328 1704 101 4 0 chr12 121023322 121023550 -23258939 - Tigger3(Golem) DNA MER2_type -1256 1773 1545 5530 124 13 3 chr12 121023553 121023881 -23258608 - L1PB4 LINE L1 -47 6109 5786 222 37 0 0 chr12 121023881 121023908 -23258581 + (TA)n Simple_repeat Simple_repeat 2 28 0 5530 124 13 3 chr12 121023908 121024445 -23258044 - L1PB4 LINE L1 -370 5786 5236 1889 171 30 12 chr12 121024448 121024776 -23257713 - Tigger3(Golem) DNA MER2_type -2695 334 1 1380 241 89 36 chr12 121024799 121025240 -23257249 - L2 LINE L2 -132 3181 2704 1893 163 0 0 chr12 121025240 121025562 -23256927 - AluSx SINE Alu 0 322 1 1380 241 89 36 chr12 121025562 121025787 -23256702 - L2 LINE L2 -609 2704 2492 3707 216 158 56 chr12 121026108 121027480 -23255009 - L1MC4 LINE L1 -6 8036 6433 901 214 0 0 chr12 121027621 121027789 -23254700 + FRAM SINE Alu 1 165 -11 430 267 74 22 chr12 121027796 121027931 -23254558 - MIR SINE MIR -106 156 15 338 185 0 0 chr12 121028120 121028185 -23254304 + MIR SINE MIR 119 183 -79 244 267 0 0 chr12 121028298 121028358 -23254131 + MIR SINE MIR 84 143 -119 * 506 330 21 21 chr12 121028355 121028588 -23253901 + MIR SINE MIR 19 251 -11 182 182 91 0 chr12 121028712 121028756 -23253733 - MIR SINE MIR -60 148 101 357 62 0 0 chr12 121029438 121029486 -23253003 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 284 264 81 0 chr12 121029497 121029584 -23252905 - MIR SINE MIR -108 154 61 391 273 0 0 chr12 121029633 121029721 -23252768 - MER58A DNA MER1_type 0 224 137 812 167 0 141 chr12 121029722 121029914 -23252575 - MER58A DNA MER1_type 0 165 1 503 228 99 82 chr12 121029955 121030145 -23252344 + MLT1K LTR MaLR 131 316 -272 261 0 0 0 chr12 121030145 121030174 -23252315 + (TG)n Simple_repeat Simple_repeat 1 29 0 503 228 99 82 chr12 121030174 121030306 -23252183 + MLT1K LTR MaLR 316 527 -61 1563 186 14 25 chr12 121030313 121030598 -23251891 - AluJo SINE Alu -30 282 1 901 150 0 0 chr12 121030615 121030742 -23251747 - FLAM_C SINE Alu -16 127 1 303 239 28 0 chr12 121030758 121030829 -23251660 + MLT1K LTR MaLR 516 588 0 377 282 141 57 chr12 121030870 121031097 -23251392 - MLT1K LTR MaLR -218 370 125 952 316 52 37 chr12 121031906 121032314 -23250175 + LTR16C LTR ERVL 76 489 -2 813 255 34 25 chr12 121032483 121032718 -23249771 + MIR SINE MIR 26 262 0 221 316 153 31 chr12 121034038 121034234 -23248255 + L2 LINE L2 2731 2950 -364 707 284 36 57 chr12 121034234 121034568 -23247921 + L2 LINE L2 2150 2476 -838 414 251 66 30 chr12 121034569 121034736 -23247753 - LTR33 LTR ERVL 0 521 349 531 0 0 0 chr12 121034748 121034807 -23247682 + (GA)n Simple_repeat Simple_repeat 2 60 0 236 307 119 10 chr12 121034871 121034972 -23247517 - LTR33 LTR ERVL -274 247 136 626 347 9 60 chr12 121035020 121035351 -23247138 + L2 LINE L2 2959 3272 0 3158 58 22 0 chr12 121035504 121035916 -23246573 + L1PA8 LINE L1 5750 6170 -2 503 244 201 6 chr12 121036156 121036320 -23246169 + MER91A DNA MER1_type 1 196 0 494 204 10 0 chr12 121036349 121036452 -23246037 + L1MA5 LINE L1 6186 6289 -11 284 286 52 19 chr12 121036784 121036938 -23245551 - L1MC4a LINE L1 -1882 5926 5768 604 310 26 0 chr12 121036997 121037237 -23245252 - L1MC4a LINE L1 -336 5785 5538 1671 143 0 0 chr12 121037269 121037514 -23244975 - AluSx SINE Alu -13 299 55 1631 251 108 18 chr12 121037583 121038085 -23244404 - MLT1H LTR MaLR -2 547 1 1848 224 120 7 chr12 121038279 121038720 -23243769 - MLT1J LTR MaLR -2 509 19 332 35 70 70 chr12 121038896 121038936 -23243553 - MLT2D LTR ERVL 0 414 375 189 0 0 0 chr12 121038936 121038957 -23243532 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 * 198 0 0 0 chr12 121038956 121038978 -23243511 + (CA)n Simple_repeat Simple_repeat 2 23 0 332 35 70 70 chr12 121038957 121038994 -23243495 - MLT2D LTR ERVL -38 376 375 296 140 20 0 chr12 121039033 121039083 -23243406 - MLT1H LTR MaLR -35 514 464 219 36 0 0 chr12 121039111 121039139 -23243350 + (TA)n Simple_repeat Simple_repeat 2 29 0 2227 130 56 26 chr12 121039142 121039520 -23242969 - MLT2C2 LTR ERVL -48 416 28 274 295 76 9 chr12 121039721 121039826 -23242663 + LTR16C LTR ERVL 100 211 -280 326 256 23 0 chr12 121039834 121039920 -23242569 - MER81 DNA DNA -2 112 25 631 254 116 26 chr12 121039944 121040247 -23242242 + LTR16C LTR ERVL 115 444 -47 1148 186 0 0 chr12 121040418 121040612 -23241877 - AluJo SINE Alu -14 298 105 2878 77 13 13 chr12 121040639 121041028 -23241461 - L1MA1 LINE L1 -11 6291 5903 751 181 0 0 chr12 121041028 121041144 -23241345 - AluJo SINE Alu -186 116 1 1483 127 0 9 chr12 121041146 121041359 -23241130 - AluJo SINE Alu -17 295 85 419 297 32 19 chr12 121042530 121042685 -23239804 - MIR SINE MIR -87 175 19 1173 244 172 3 chr12 121042896 121043286 -23239203 - LTR33A LTR ERVL -2 521 66 1005 135 0 0 chr12 121044416 121044579 -23237910 + (TTCC)n Simple_repeat Simple_repeat 2 164 0 495 171 181 0 chr12 121044579 121044684 -23237805 - AluJo SINE Alu -177 125 2 383 282 51 26 chr12 121044698 121044854 -23237635 + MIR SINE MIR 77 236 -26 2156 105 0 21 chr12 121044994 121045280 -23237209 + AluSx SINE Alu 1 280 -32 227 69 0 0 chr12 121045289 121045483 -23237006 + Alu SINE Alu 252 445 0 199 345 35 76 chr12 121045786 121045983 -23236506 - L2 LINE L2 -9 3263 3075 2216 102 0 0 chr12 121046245 121046529 -23235960 - AluY SINE Alu -18 293 10 1950 136 0 0 chr12 121046539 121046811 -23235678 - AluSx SINE Alu -40 272 1 329 315 101 29 chr12 121046834 121047387 -23235102 - L2 LINE L2 -49 3264 2670 247 255 0 0 chr12 121047458 121047509 -23234980 - L2 LINE L2 0 3272 3222 * 777 191 157 19 chr12 121047475 121047685 -23234804 - MIR SINE MIR -11 251 13 315 176 25 34 chr12 121047940 121048059 -23234430 + CT-rich Low_complexity Low_complexity 6 123 0 187 246 71 111 chr12 121048387 121048513 -23233976 + L2 LINE L2 2638 2758 -556 204 152 43 0 chr12 121048609 121048655 -23233834 + L2 LINE L2 2587 2634 -680 607 243 182 48 chr12 121049083 121049183 -23233306 - MLT1J2 LTR MaLR 0 450 365 2220 165 160 20 chr12 121049183 121049632 -23232857 - MLT2B2 LTR ERVL 0 515 4 607 243 182 48 chr12 121049632 121049844 -23232645 - MLT1J2 LTR MaLR -85 365 96 434 347 108 28 chr12 121049918 121050241 -23232248 + L2 LINE L2 2914 3262 -10 831 289 103 26 chr12 121050523 121050979 -23231510 - LTR16C LTR ERVL 0 491 1 287 262 0 0 chr12 121051088 121051172 -23231317 + (TA)n Simple_repeat Simple_repeat 2 85 0 412 268 70 7 chr12 121051189 121051331 -23231158 - L1ME LINE L1 -460 5661 5511 1983 154 0 28 chr12 121051335 121051653 -23230836 - AluSx SINE Alu -3 309 1 1127 205 29 5 chr12 121051836 121052041 -23230448 - MLT1A1 LTR MaLR 0 365 156 1416 163 72 38 chr12 121052058 121052322 -23230167 - AluJo SINE Alu -39 273 1 617 179 119 0 chr12 121052331 121052465 -23230024 - MLT1A1 LTR MaLR -215 150 1 340 257 14 0 chr12 121052862 121052936 -23229553 - HAL1 LINE L1 -1616 891 817 953 209 158 88 chr12 121053375 121053886 -23228603 + MLT1H LTR MaLR 1 547 -2 1460 149 88 34 chr12 121053935 121054197 -23228292 + AluJo SINE Alu 1 276 -36 547 198 118 108 chr12 121054212 121054650 -23227839 - MLT1J LTR MaLR -19 492 11 210 287 90 25 chr12 121055705 121055827 -23226662 - MIR SINE MIR -6 256 127 268 254 16 0 chr12 121055827 121055890 -23226599 - MLT1J2 LTR MaLR -526 64 1 243 304 0 89 chr12 121055967 121056079 -23226410 - MIR SINE MIR -68 140 39 356 257 0 0 chr12 121056205 121056279 -23226210 - Charlie8 DNA MER1_type -1 2416 2343 668 217 105 105 chr12 121056329 121056605 -23225884 - Charlie8 DNA MER1_type -2141 276 1 2353 32 46 4 chr12 121058117 121058397 -23224092 - AluY SINE Alu -19 292 1 241 291 58 29 chr12 121058485 121058588 -23223901 - L1ME4a LINE L1 -172 5949 5844 324 291 50 50 chr12 121058680 121058821 -23223668 + MIR SINE MIR 56 196 -66 257 313 43 9 chr12 121058889 121059004 -23223485 - MIR SINE MIR -53 209 91 3159 123 38 9 chr12 121059019 121059546 -23222943 + L1MA5A LINE L1 5755 6296 -1 507 101 0 0 chr12 121059561 121059630 -23222859 - MER33 DNA MER1_type -250 74 6 278 320 10 10 chr12 121059634 121059731 -23222758 - MIR SINE MIR -152 110 14 597 299 147 22 chr12 121060569 121061049 -23221440 + L2 LINE L2 2782 3308 -5 432 111 0 0 chr12 121061632 121061704 -23220785 + (GA)n Simple_repeat Simple_repeat 1 72 0 381 131 0 0 chr12 121061709 121061770 -23220719 + (CA)n Simple_repeat Simple_repeat 2 62 0 235 239 130 94 chr12 121061845 121061983 -23220506 + MIR SINE MIR 87 229 -33 980 138 27 21 chr12 121062103 121062291 -23220198 - MER53 DNA DNA 0 189 1 4308 105 13 3 chr12 121062931 121063550 -23218939 - L1PB2 LINE L1 -2 6149 5525 4798 217 43 14 chr12 121064086 121064669 -23217820 + L1M4 LINE L1 4001 4565 -1581 2073 133 3 0 chr12 121064669 121064962 -23217527 + AluSq SINE Alu 1 294 -19 4798 217 43 14 chr12 121064962 121065604 -23216885 + L1M4 LINE L1 4565 5262 -884 529 233 46 15 chr12 121065629 121065890 -23216599 + L1ME2 LINE L1 5128 5589 -575 600 144 0 43 chr12 121065894 121066033 -23216456 + (TTCTCC)n Simple_repeat Simple_repeat 4 136 0 1827 150 18 0 chr12 121066033 121066306 -23216183 - AluJb SINE Alu -34 278 1 2424 215 55 6 chr12 121066311 121066855 -23215634 + L1ME2 LINE L1 5585 6155 -9 308 274 12 12 chr12 121066993 121067077 -23215412 + L2 LINE L2 3186 3269 -3 1962 112 4 0 chr12 121067151 121067420 -23215069 - AluSq SINE Alu -9 304 35 672 318 83 34 chr12 121067555 121068197 -23214292 + L2 LINE L2 1773 2445 -869 319 343 103 25 chr12 121068448 121068690 -23213799 + L3 LINE CR1 1230 1490 -87 266 245 149 15 chr12 121069549 121069685 -23212804 - MIR3 SINE MIR -69 139 10 236 230 27 40 chr12 121069856 121069930 -23212559 - MER103 DNA DNA -52 114 42 439 230 191 28 chr12 121069967 121070145 -23212344 + MLT1H LTR MaLR 1 207 -342 392 298 13 46 chr12 121070150 121070301 -23212188 + MLT1H LTR MaLR 167 312 -237 2495 118 4 3 chr12 121070548 121071021 -23211468 + LTR26B LTR ERV1 1 531 0 2260 120 0 3 chr12 121071166 121071474 -23211015 - AluSx SINE Alu -4 308 2 1130 248 65 41 chr12 121072144 121072483 -23210006 - MLT1J LTR MaLR -163 348 2 30 84 0 25 chr12 121072708 121072827 -23209662 + AT_rich Low_complexity Low_complexity 1 116 0 192 158 0 0 chr12 121072948 121072986 -23209503 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 246 343 147 0 chr12 121073011 121073113 -23209376 - L2 LINE L2 -34 3238 3122 1245 267 35 0 chr12 121073306 121073624 -23208865 + LTR16C LTR ERVL 152 480 -11 306 260 31 31 chr12 121074282 121074378 -23208111 + MIR SINE MIR 41 136 -126 673 279 35 5 chr12 121074426 121074627 -23207862 - MIR SINE MIR -42 220 14 1681 226 97 36 chr12 121074883 121075379 -23207110 - LTR26B LTR ERV1 0 531 6 2106 130 3 3 chr12 121076353 121076652 -23205837 + AluJo SINE Alu 1 299 -13 351 221 0 0 chr12 121076689 121076757 -23205732 - L2 LINE L2 -1 3312 3245 418 204 46 9 chr12 121076890 121076998 -23205491 - MIR SINE MIR -71 191 80 2548 47 0 7 chr12 121077062 121077361 -23205128 - AluY SINE Alu -14 297 1 325 185 31 15 chr12 121077382 121077447 -23205042 - MER81 DNA DNA -41 73 8 203 275 0 50 chr12 121077873 121077953 -23204536 + T-rich Low_complexity Low_complexity 2 77 0 359 158 0 0 chr12 121077971 121078028 -23204461 + L2 LINE L2 3257 3313 0 297 304 43 29 chr12 121078231 121078369 -23204120 + MER5A DNA MER1_type 35 174 -15 2319 101 3 0 chr12 121078920 121079217 -23203272 - AluSp SINE Alu -15 298 1 219 114 0 0 chr12 121079290 121079325 -23203164 + (CACG)n Simple_repeat Simple_repeat 2 36 0 344 164 27 14 chr12 121079430 121079503 -23202986 - MER116 DNA Mariner -6 74 1 236 232 61 20 chr12 121079538 121079637 -23202852 - L1MC5 LINE L1 -23 7938 7836 309 51 0 0 chr12 121079741 121079780 -23202709 + (TG)n Simple_repeat Simple_repeat 2 40 0 1621 127 18 133 chr12 121079796 121080004 -23202485 - AluJo SINE Alu -1 301 145 1273 60 0 11 chr12 121080004 121080186 -23202303 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1621 127 18 133 chr12 121080186 121080316 -23202173 - AluJo SINE Alu -157 145 2 310 217 70 43 chr12 121080374 121080489 -23202000 - L1ME3A LINE L1 -240 5930 5813 278 234 31 0 chr12 121080757 121080821 -23201668 + L2 LINE L2 3248 3313 0 532 235 77 31 chr12 121081002 121081198 -23201291 + MIR SINE MIR 49 253 -9 446 288 96 0 chr12 121081762 121081939 -23200550 + MER117 DNA MER1_type 1 194 -3 1023 288 50 46 chr12 121082180 121082639 -23199850 + L2 LINE L2 2852 3312 -1 4301 121 34 0 chr12 121082798 121083411 -23199078 - MER41B LTR ERV1 0 635 2 271 154 0 19 chr12 121083515 121083567 -23198922 - MLT1J LTR MaLR -48 463 413 670 259 78 0 chr12 121083678 121083871 -23198618 - MLT1J LTR MaLR -300 211 4 227 219 228 35 chr12 121084058 121084172 -23198317 - MIR SINE MIR 0 262 127 632 205 59 128 chr12 121084191 121084497 -23197992 - L1MC2 LINE L1 -126 6218 5893 383 22 0 0 chr12 121084497 121084543 -23197946 + MADE1 DNA Mariner 1 46 -34 632 205 59 128 chr12 121084543 121085026 -23197463 - L1MC2 LINE L1 -451 5893 5447 502 230 55 70 chr12 121085786 121085986 -23196503 + MER117 DNA MER1_type 1 197 0 926 174 101 0 chr12 121086108 121086286 -23196203 + MER20 DNA MER1_type 24 219 0 1045 227 79 0 chr12 121086343 121086559 -23195930 - LTR16C LTR ERVL -84 407 175 407 289 167 0 chr12 121086624 121086738 -23195751 + L2 LINE L2 3140 3272 0 203 323 16 0 chr12 121087249 121087311 -23195178 + (TG)n Simple_repeat Simple_repeat 2 64 0 609 250 77 59 chr12 121087609 121088012 -23194477 - MLT1H LTR MaLR 0 549 1 721 315 13 17 chr12 121088018 121088256 -23194233 + MIR SINE MIR 21 257 -5 239 233 27 27 chr12 121089129 121089202 -23193287 - MIR3 SINE MIR -13 195 123 989 256 65 83 chr12 121089540 121090047 -23192442 + MLT1J LTR MaLR 12 509 -2 1738 124 0 34 chr12 121090208 121090473 -23192016 - Tigger2 DNA MER2_type 0 2718 2463 4678 143 22 18 chr12 121090506 121091129 -23191360 - Tigger2 DNA MER2_type -1940 778 150 1692 174 9 37 chr12 121091129 121091450 -23191039 - AluJb SINE Alu 0 312 1 4678 143 22 18 chr12 121091450 121091601 -23190888 - Tigger2 DNA MER2_type -2568 150 1 189 217 55 15 chr12 121091607 121091672 -23190817 - MIR SINE MIR -68 140 89 411 192 0 0 chr12 121091696 121091769 -23190720 + L2 LINE L2 3190 3262 -10 2229 110 3 0 chr12 121091772 121092063 -23190426 + AluSx SINE Alu 1 292 -20 2489 83 0 0 chr12 121092064 121092364 -23190125 + AluSx SINE Alu 13 312 0 306 317 25 8 chr12 121092653 121092773 -23189716 + MLT1K LTR MaLR 107 228 -360 32 0 0 0 chr12 121092801 121092833 -23189656 + AT_rich Low_complexity Low_complexity 1 32 0 2268 75 0 0 chr12 121092844 121093180 -23189309 - AluY SINE Alu 0 336 1 1969 135 0 0 chr12 121093218 121093484 -23189005 - AluSx SINE Alu -30 282 17 500 191 11 0 chr12 121093484 121093573 -23188916 - L1PB4 LINE L1 -30 6126 6037 585 220 50 32 chr12 121093605 121093823 -23188666 - L1MC5 LINE L1 -44 7917 7696 2286 88 0 14 chr12 121093826 121094155 -23188334 + AluSx SINE Alu 1 312 0 1062 149 0 0 chr12 121094339 121094493 -23187996 + AluSg/x SINE Alu 144 297 -13 510 70 0 0 chr12 121094506 121094577 -23187912 + (CA)n Simple_repeat Simple_repeat 2 72 0 378 313 61 46 chr12 121094633 121094962 -23187527 + MLT1K LTR MaLR 252 585 -3 451 268 38 8 chr12 121095954 121096124 -23186365 - MER41B LTR ERV1 -205 430 220 679 137 0 0 chr12 121096228 121096323 -23186166 - AluJb SINE Alu -16 296 202 1200 149 21 16 chr12 121096376 121096570 -23185919 - AluJb SINE Alu -116 196 2 2144 155 99 21 chr12 121096890 121097082 -23185407 + MLT1C LTR MaLR 1 177 -290 270 81 0 0 chr12 121097082 121097119 -23185370 + (CA)n Simple_repeat Simple_repeat 2 38 0 2144 155 99 21 chr12 121097119 121097359 -23185130 + MLT1C LTR MaLR 177 467 0 994 279 69 22 chr12 121097401 121097763 -23184726 + LTR16A LTR ERVL 61 439 -11 341 117 17 0 chr12 121098297 121098357 -23184132 + GA-rich Low_complexity Low_complexity 2 62 0 421 283 145 6 chr12 121099400 121099566 -23182923 + MIR SINE MIR 18 206 -56 1055 276 47 0 chr12 121099588 121099889 -23182600 - LTR16A LTR ERVL -4 446 132 263 209 0 45 chr12 121100084 121100151 -23182338 - L2 LINE L2 -2 3270 3207 493 326 0 6 chr12 121100251 121100432 -23182057 + (CA)n Simple_repeat Simple_repeat 1 180 0 459 282 65 20 chr12 121100454 121100756 -23181733 - LTR16B LTR ERVL 0 464 77 465 259 88 0 chr12 121101028 121101175 -23181314 - MIR SINE MIR -13 249 90 2330 144 3 0 chr12 121101177 121101524 -23180965 + MER7A DNA MER2_type 1 346 0 4260 121 21 0 chr12 121101547 121102169 -23180320 - MER41B LTR ERV1 0 635 1 494 290 116 53 chr12 121103047 121103197 -23179292 + L2 LINE L2 2895 3034 -238 928 198 74 0 chr12 121103197 121103399 -23179090 - MER20 DNA MER1_type -2 217 1 494 290 116 53 chr12 121103399 121103603 -23178886 + L2 LINE L2 3034 3271 -1 338 278 43 0 chr12 121103683 121103798 -23178691 + MIR SINE MIR 143 262 0 2221 135 0 0 chr12 121103958 121104270 -23178219 + AluJb SINE Alu 1 312 0 467 226 252 0 chr12 121104338 121104497 -23177992 + MIR SINE MIR 10 208 -54 241 238 205 33 chr12 121104624 121104746 -23177743 - MER117 DNA MER1_type -16 181 39 333 210 62 0 chr12 121104894 121104975 -23177514 + MER5C DNA MER1_type 2 87 -237 799 249 70 18 chr12 121104982 121105267 -23177222 - MLT1C LTR MaLR 0 467 168 1060 135 0 0 chr12 121105284 121105432 -23177057 - AluJb SINE Alu -18 294 147 724 177 98 18 chr12 121105434 121105598 -23176891 - MLT1C LTR MaLR -285 182 6 383 254 37 67 chr12 121106368 121106533 -23175956 - MIR3 SINE MIR -51 157 45 183 203 139 13 chr12 121106710 121106789 -23175700 + MIR SINE MIR 47 135 -127 962 235 49 7 chr12 121106817 121107207 -23175282 + LTR33A LTR ERVL 64 523 0 511 245 14 7 chr12 121107213 121107352 -23175137 + MIR SINE MIR 97 236 -26 3347 104 57 10 chr12 121108723 121109213 -23173276 + LTR64 LTR ERVK 1 513 0 494 266 8 8 chr12 121109599 121109727 -23172762 - LTR33 LTR ERVL -12 509 382 1894 196 40 69 chr12 121109832 121110352 -23172137 - MLT1D LTR MaLR 0 505 1 199 298 97 32 chr12 121110564 121110688 -23171801 + L2 LINE L2 3125 3256 -16 232 263 13 13 chr12 121111029 121111105 -23171384 + L2 LINE L2 3189 3264 -8 195 42 0 0 chr12 121111154 121111178 -23171311 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 2134 117 0 0 chr12 121111180 121111461 -23171028 - AluSx SINE Alu -31 281 1 195 238 24 0 chr12 121111462 121111504 -23170985 + MIR3 SINE MIR 117 159 -49 635 284 45 8 chr12 121111654 121111897 -23170592 - MIR SINE MIR -10 252 1 2161 229 160 25 chr12 121111934 121112639 -23169850 - L1MC4 LINE L1 -95 7713 6964 180 284 0 0 chr12 121113186 121113253 -23169236 + CT-rich Low_complexity Low_complexity 3 69 0 379 198 66 18 chr12 121113783 121113950 -23168539 + (TCTCTG)n Simple_repeat Simple_repeat 3 177 0 193 160 60 60 chr12 121114143 121114193 -23168296 + L2 LINE L2 3193 3242 -71 1903 154 62 9 chr12 121114248 121114573 -23167916 + MLT1A1 LTR MaLR 24 365 0 397 145 0 0 chr12 121114641 121114703 -23167786 + L2 LINE L2 3211 3272 0 914 239 118 31 chr12 121114823 121115213 -23167276 - MLT1J1 LTR MaLR -22 424 1 296 337 11 0 chr12 121115234 121115323 -23167166 + L2 LINE L2 3146 3235 -37 440 173 24 178 chr12 121115332 121115428 -23167061 - MER5B DNA MER1_type -2 176 127 1802 185 0 3 chr12 121115428 121115720 -23166769 - AluJo SINE Alu -21 291 1 440 173 24 178 chr12 121115720 121115831 -23166658 - MER5B DNA MER1_type -51 127 1 460 272 46 64 chr12 121115905 121116078 -23166411 + Charlie8 DNA MER1_type 1 170 -2247 291 282 107 20 chr12 121116404 121116553 -23165936 + MIR3 SINE MIR 24 185 -23 1678 226 23 3 chr12 121117316 121117670 -23164819 - LTR16C LTR ERVL 0 491 131 625 301 118 21 chr12 121117840 121118262 -23164227 + MLT1L LTR MaLR 147 609 -6 450 316 21 11 chr12 121118387 121118577 -23163912 + MIR SINE MIR 2 193 -69 832 137 8 0 chr12 121118720 121118837 -23163652 + FLAM_C SINE Alu 1 118 -25 22 0 0 0 chr12 121119718 121119740 -23162749 + AT_rich Low_complexity Low_complexity 1 22 0 463 245 81 85 chr12 121119783 121120152 -23162337 - L1MC4a LINE L1 -9 6155 5643 401 248 23 53 chr12 121120790 121120842 -23161647 + MIR SINE MIR 16 68 -140 1956 186 177 2 chr12 121120842 121121272 -23161217 + MLT1D LTR MaLR 1 505 0 401 248 23 53 chr12 121121272 121121352 -23161137 + MIR SINE MIR 68 144 -64 771 204 31 6 chr12 121121903 121122065 -23160424 + MER5B DNA MER1_type 7 172 -6 369 263 11 0 chr12 121122086 121122181 -23160308 + L2 LINE L2 3162 3257 -15 384 22 0 0 chr12 121122384 121122429 -23160060 + (CA)n Simple_repeat Simple_repeat 2 46 0 276 195 50 20 chr12 121122536 121122627 -23159862 + MLT1H LTR MaLR 52 162 -264 1333 132 40 18 chr12 121123050 121123277 -23159212 + L1MA5 LINE L1 6008 6239 -61 2127 108 7 0 chr12 121123305 121123584 -23158905 - AluSp SINE Alu -19 294 14 23 0 0 0 chr12 121123589 121123612 -23158877 + AT_rich Low_complexity Low_complexity 1 23 0 280 123 0 0 chr12 121123628 121123685 -23158804 + L1MA5 LINE L1 6242 6298 -2 1850 231 57 11 chr12 121123701 121124177 -23158312 - L1MC/D LINE L1 -2019 5789 5292 1125 128 17 6 chr12 121124478 121124657 -23157832 + L1MA5 LINE L1 6073 6253 -47 380 88 0 0 chr12 121124696 121124753 -23157736 + L1MA5 LINE L1 6242 6298 -2 366 298 130 10 chr12 121125598 121125806 -23156683 - MIR SINE MIR -8 254 22 240 59 0 0 chr12 121126295 121126329 -23156160 + (TG)n Simple_repeat Simple_repeat 2 35 0 420 179 57 28 chr12 121126598 121126704 -23155785 - MIR3 SINE MIR -86 122 14 492 212 0 0 chr12 121127310 121127409 -23155080 + MIR SINE MIR 43 141 -67 338 261 15 31 chr12 121127830 121127960 -23154529 - MER117 DNA MER1_type -1 196 69 335 253 51 0 chr12 121127988 121128067 -23154422 - MER117 DNA MER1_type -114 83 1 601 265 103 26 chr12 121128981 121129215 -23153274 + MIR SINE MIR 7 258 -4 215 318 47 0 chr12 121129504 121129589 -23152900 + L2 LINE L2 2871 2959 -313 1588 283 81 8 chr12 121129600 121130095 -23152394 - MLT1K LTR MaLR -2 586 56 284 271 0 0 chr12 121130282 121130341 -23152148 + L2 LINE L2 3211 3269 -3 3491 112 14 22 chr12 121130341 121130962 -23151527 - MER4B LTR ERV1 0 779 3 306 296 106 25 chr12 121130999 121131181 -23151308 + LTR33A LTR ERVL 21 214 -307 2900 133 81 4 chr12 121131205 121131724 -23150765 - LTR49 LTR ERV1 -36 559 1 198 0 0 0 chr12 121131764 121131786 -23150703 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1010 202 77 0 chr12 121131811 121132044 -23150445 + LTR33A LTR ERVL 271 521 -2 351 0 0 0 chr12 121132332 121132371 -23150118 + (TG)n Simple_repeat Simple_repeat 2 40 0 428 314 69 39 chr12 121132593 121132797 -23149692 + MIR SINE MIR 47 256 -6 859 226 19 69 chr12 121133197 121133473 -23149016 + MIR SINE MIR 3 262 0 556 265 97 29 chr12 121133503 121133782 -23148707 - LTR16C LTR ERVL -1 490 193 182 308 62 15 chr12 121134244 121134309 -23148180 + L2 LINE L2 3139 3206 -66 525 247 26 19 chr12 121134692 121134846 -23147643 + MIR SINE MIR 38 192 -70 2089 162 19 3 chr12 121134850 121135214 -23147275 + L1MB7 LINE L1 5796 6165 -19 1000 257 111 24 chr12 121135277 121135716 -23146773 + L2 LINE L2 2595 3113 -200 1680 201 3 0 chr12 121135716 121136004 -23146485 + AluJo SINE Alu 1 289 -23 1000 257 111 24 chr12 121136004 121136225 -23146264 + L2 LINE L2 3113 3313 0 560 339 14 0 chr12 121137089 121137310 -23145179 - L1MC4a LINE L1 -1898 5910 5687 207 0 0 0 chr12 121137372 121137395 -23145094 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1646 172 7 0 chr12 121137419 121137698 -23144791 - AluJb SINE Alu 0 312 32 344 233 30 68 chr12 121138299 121138432 -23144057 - L1MC5 LINE L1 -29 7932 7805 * 1088 328 12 5 chr12 121138415 121138833 -23143656 - L1MC4a LINE L1 -1922 5886 5466 453 209 20 164 chr12 121138867 121139111 -23143378 - MER112 DNA MER1_type -46 214 6 403 302 30 26 chr12 121139391 121139585 -23142904 - MER20B DNA MER1_type -17 202 5 323 231 0 0 chr12 121139677 121139742 -23142747 + MIR SINE MIR 198 262 0 183 42 0 0 chr12 121139797 121139821 -23142668 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2347 131 3 0 chr12 121139832 121140192 -23142297 - L1PB1 LINE L1 -8 6143 5783 560 128 6 1 chr12 121140218 121140318 -23142171 - L1ME LINE L1 -354 5808 5706 1931 93 58 14 chr12 121140884 121141175 -23141314 + AluSx SINE Alu 1 304 -8 225 273 0 0 chr12 121141257 121141323 -23141166 + (TA)n Simple_repeat Simple_repeat 2 67 0 224 230 88 44 chr12 121141509 121141622 -23140867 + MIR SINE MIR 22 139 -69 2395 67 16 80 chr12 121141679 121142066 -23140423 + L1PA10 LINE L1 5806 6167 -1 1278 145 35 9 chr12 121142096 121142324 -23140165 + L1PA11 LINE L1 5941 6174 0 403 241 0 0 chr12 121142423 121142502 -23139987 - L2 LINE L2 0 3272 3194 353 257 21 29 chr12 121142715 121142855 -23139634 + L1MDa LINE L1 2443 2581 -3959 192 323 0 15 chr12 121143167 121143232 -23139257 + MIR SINE MIR 4 67 -195 230 288 0 0 chr12 121143244 121143303 -23139186 - L2 LINE L2 0 3313 3255 466 249 30 73 chr12 121143303 121143340 -23139149 + MIR SINE MIR 97 134 -128 1302 185 120 135 chr12 121143340 121143678 -23138811 - MLT1H LTR MaLR 0 549 221 2461 80 0 0 chr12 121143678 121143989 -23138500 + AluY SINE Alu 1 311 0 1302 185 120 135 chr12 121143989 121144207 -23138282 - MLT1H LTR MaLR -328 221 1 466 249 30 73 chr12 121144207 121144334 -23138155 + MIR SINE MIR 134 254 -8 1309 293 86 24 chr12 121145640 121146131 -23136358 - MLT1K LTR MaLR -58 530 10 1336 258 76 9 chr12 121146147 121146582 -23135907 - LTR16B LTR ERVL 0 464 1 247 262 110 35 chr12 121146653 121146764 -23135725 - MIR3 SINE MIR -44 164 46 1522 191 42 37 chr12 121146801 121147156 -23135333 + MLT1C LTR MaLR 7 363 -104 945 199 11 0 chr12 121147293 121147479 -23135010 - L1PB4 LINE L1 -9 6147 5960 300 320 47 23 chr12 121147681 121147809 -23134680 - MIR SINE MIR -6 256 126 1927 100 3 21 chr12 121147958 121148313 -23134176 + AluSx SINE Alu 1 350 0 309 89 0 0 chr12 121148759 121148804 -23133685 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 208 288 213 12 chr12 121148804 121148884 -23133605 - L2 LINE L2 -14 3299 3204 395 308 173 22 chr12 121149240 121149425 -23133064 + MIR SINE MIR 2 214 -48 210 282 0 42 chr12 121149481 121149552 -23132937 - L2 LINE L2 -183 3089 3022 294 330 119 0 chr12 121149552 121149661 -23132828 + L2 LINE L2 3151 3272 0 753 271 63 34 chr12 121149843 121150112 -23132377 - L1ME LINE L1 -311 5810 5534 765 236 57 7 chr12 121150670 121150886 -23131603 - MIR SINE MIR 0 262 32 204 400 73 0 chr12 121151673 121151783 -23130706 - L2 LINE L2 -18 3295 3178 2300 82 3 3 chr12 121152026 121152330 -23130159 + AluSp SINE Alu 1 304 -9 1006 254 30 4 chr12 121152674 121152906 -23129583 - MIR SINE MIR -24 238 1 304 283 40 10 chr12 121153124 121153223 -23129266 - MIR SINE MIR -63 145 44 2332 157 45 66 chr12 121153871 121154387 -23128102 - MLT1D LTR MaLR 0 505 1 529 245 83 60 chr12 121154436 121154652 -23127837 + MIR SINE MIR 20 240 -22 333 321 161 12 chr12 121154697 121154859 -23127630 + MIR SINE MIR 6 191 -71 21 0 0 0 chr12 121155332 121155353 -23127136 + AT_rich Low_complexity Low_complexity 1 21 0 601 266 87 19 chr12 121155524 121155731 -23126758 + MIR SINE MIR 19 239 -23 199 299 126 58 chr12 121155845 121155932 -23126557 + MIR SINE MIR 30 122 -86 1878 143 3 0 chr12 121155962 121156255 -23126234 + AluSx SINE Alu 1 294 -18 202 255 0 0 chr12 121156261 121156308 -23126181 - L2 LINE L2 -18 3295 3249 * 461 320 9 13 chr12 121156297 121156458 -23126031 + MIR3 SINE MIR 13 175 -52 739 289 37 5 chr12 121156534 121156752 -23125737 + MIR SINE MIR 22 246 -16 349 229 0 28 chr12 121156757 121156901 -23125588 + (CACCAT)n Simple_repeat Simple_repeat 1 140 0 1117 195 4 33 chr12 121156901 121157142 -23125347 + AluJo SINE Alu 47 280 -32 2167 107 0 3 chr12 121157142 121157442 -23125047 - AluSq SINE Alu -13 300 2 255 123 41 14 chr12 121158938 121159011 -23123478 - HERVFH21 LTR ERV1 -6435 94 20 40 0 0 0 chr12 121161004 121161044 -23121445 + AT_rich Low_complexity Low_complexity 1 40 0 434 203 264 7 chr12 121161249 121161397 -23121092 + MIR3 SINE MIR 20 205 -3 312 208 196 0 chr12 121161788 121161879 -23120610 - MIR3 SINE MIR -48 160 49 424 282 0 9 chr12 121162623 121162733 -23119756 + MIR SINE MIR 23 131 -131 588 307 179 0 chr12 121162750 121162962 -23119527 + MIR SINE MIR 3 252 -10 232 279 110 16 chr12 121163063 121163224 -23119265 + MIR SINE MIR 2 182 -63 201 308 115 94 chr12 121163329 121163563 -23118926 + L2 LINE L2 3034 3272 0 338 283 54 0 chr12 121163760 121163852 -23118637 - L2 LINE L2 0 3272 3176 1862 144 25 0 chr12 121163853 121164137 -23118352 + AluSx SINE Alu 1 291 -21 1795 120 24 14 chr12 121164782 121165074 -23117415 - AluJo SINE Alu -17 295 1 186 189 0 0 chr12 121165469 121165506 -23116983 + T-rich Low_complexity Low_complexity 4 40 0 238 254 8 71 chr12 121165730 121165875 -23116614 + (TCTCTG)n Simple_repeat Simple_repeat 1 135 0 225 195 23 35 chr12 121165902 121165989 -23116500 + CT-rich Low_complexity Low_complexity 1 86 0 403 214 16 111 chr12 121166109 121166189 -23116300 + MER81 DNA DNA 1 66 -48 1672 173 3 10 chr12 121166189 121166501 -23115988 + AluJo SINE Alu 1 310 -2 403 214 16 111 chr12 121166501 121166546 -23115943 + MER81 DNA DNA 66 114 0 847 185 130 0 chr12 121166877 121167039 -23115450 - MER5A DNA MER1_type -6 183 1 361 302 129 47 chr12 121167085 121167843 -23114646 - L2 LINE L2 -47 3266 2453 390 290 55 49 chr12 121168868 121169111 -23113378 - L1MB8 LINE L1 -166 6008 5758 747 236 22 17 chr12 121169338 121169516 -23112973 + MIR SINE MIR 21 199 -63 238 193 26 18 chr12 121169621 121169735 -23112754 + (TG)n Simple_repeat Simple_repeat 2 116 0 234 0 0 0 chr12 121170572 121170598 -23111891 + (TTA)n Simple_repeat Simple_repeat 1 26 0 43 20 0 0 chr12 121170710 121170760 -23111729 + AT_rich Low_complexity Low_complexity 1 50 0 1071 225 62 4 chr12 121170863 121171107 -23111382 + MIR SINE MIR 2 259 -3 277 325 24 41 chr12 121171158 121171281 -23111208 - MIR SINE MIR -82 180 60 587 279 30 60 chr12 121171672 121171873 -23110616 + MIR SINE MIR 5 199 -63 180 0 0 0 chr12 121172118 121172138 -23110351 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr12 121172176 121172202 -23110287 + AT_rich Low_complexity Low_complexity 1 26 0 371 306 28 14 chr12 121172366 121172510 -23109979 - MER5A DNA MER1_type -1 188 43 267 308 103 6 chr12 121172576 121172732 -23109757 - L3 LINE CR1 -116 1461 1291 2045 117 21 0 chr12 121173450 121173741 -23108748 + AluSx SINE Alu 13 309 -3 562 302 176 20 chr12 121173813 121174308 -23108181 - L2 LINE L2 -36 3236 2678 794 294 43 5 chr12 121174565 121174776 -23107713 + MIR SINE MIR 44 262 0 758 268 45 56 chr12 121174858 121175145 -23107344 + L2 LINE L2 3029 3312 -1 807 232 21 37 chr12 121175765 121175955 -23106534 + MER5A DNA MER1_type 3 189 0 486 299 30 30 chr12 121175984 121176148 -23106341 - MER5B DNA MER1_type -2 176 13 630 309 27 9 chr12 121176636 121176856 -23105633 - MIR SINE MIR 0 262 39 251 162 44 15 chr12 121177965 121178033 -23104456 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 192 152 0 0 chr12 121178039 121178072 -23104417 + (TG)n Simple_repeat Simple_repeat 2 34 0 1020 208 42 14 chr12 121178096 121178308 -23104181 + MER82 DNA MER2_type 2 219 -434 2188 203 35 55 chr12 121178311 121178853 -23103636 + MER82 DNA MER2_type 122 652 -1 1315 284 67 41 chr12 121178870 121179408 -23103081 - MLT1K LTR MaLR 0 588 37 273 119 0 0 chr12 121179755 121179797 -23102692 + (TC)n Simple_repeat Simple_repeat 1 42 0 218 328 0 0 chr12 121179940 121180001 -23102488 + MIR SINE MIR 189 249 -13 992 243 5 18 chr12 121180068 121180286 -23102203 - MIR SINE MIR -28 234 20 473 281 75 12 chr12 121180802 121180962 -23101527 - MIR SINE MIR -80 182 13 195 114 0 0 chr12 121181018 121181053 -23101436 + (TG)n Simple_repeat Simple_repeat 2 36 0 193 241 18 0 chr12 121181122 121181234 -23101255 + (TG)n Simple_repeat Simple_repeat 2 115 0 625 326 11 5 chr12 121181467 121181654 -23100835 - L3 LINE CR1 -74 1503 1316 483 304 84 16 chr12 121181685 121181876 -23100613 + MIR SINE MIR 7 210 -52 414 316 17 0 chr12 121181952 121182069 -23100420 + MIR SINE MIR 2 120 -142 998 157 58 5 chr12 121182151 121182342 -23100147 - LTR33 LTR ERVL -318 203 3 329 215 13 0 chr12 121182356 121182435 -23100054 + MER116 DNA Mariner 1 80 0 214 196 206 56 chr12 121182443 121182550 -23099939 + MIR SINE MIR 23 145 -63 489 346 11 21 chr12 121183241 121183429 -23099060 + MIR SINE MIR 53 238 -24 401 282 226 21 chr12 121183430 121183717 -23098772 - MLT1I LTR MaLR -5 404 59 188 143 24 0 chr12 121183779 121183821 -23098668 + (TTA)n Simple_repeat Simple_repeat 2 44 0 726 277 84 5 chr12 121183986 121184199 -23098290 - MIR SINE MIR -32 230 1 2242 67 44 0 chr12 121185116 121185414 -23097075 + AluY SINE Alu 1 311 0 1442 283 107 27 chr12 121185426 121185910 -23096579 - MLT1K LTR MaLR -64 524 2 247 231 0 0 chr12 121186057 121186109 -23096380 - MIR SINE MIR -55 207 156 345 293 0 38 chr12 121186109 121186206 -23096283 - L1MC4 LINE L1 -1333 6709 6615 1903 127 3 7 chr12 121186206 121186489 -23096000 - AluSx SINE Alu -27 285 4 202 283 264 9 chr12 121186497 121186603 -23095886 - MIR SINE MIR -101 161 29 1503 207 102 66 chr12 121186633 121187160 -23095329 - MLT1H LTR MaLR -3 546 1 246 223 87 87 chr12 121187377 121187477 -23095012 - MIR SINE MIR -1 261 162 657 298 48 9 chr12 121187477 121187705 -23094784 + MIR SINE MIR 2 238 -24 452 207 55 69 chr12 121187715 121187860 -23094629 - MIR SINE MIR -95 167 25 1705 242 55 35 chr12 121188398 121188974 -23093515 + L2 LINE L2 2701 3303 -10 276 297 40 47 chr12 121188975 121189123 -23093366 - Charlie8 DNA MER1_type -2251 166 20 554 214 103 7 chr12 121189803 121189948 -23092541 + MIR SINE MIR 88 246 -16 786 274 107 13 chr12 121190337 121190571 -23091918 + MIR SINE MIR 6 261 -1 1481 243 35 42 chr12 121191110 121191562 -23090927 - LTR16A1 LTR ERVL -6 451 3 900 249 85 105 chr12 121192726 121192979 -23089510 - L2 LINE L2 -1 3312 3055 180 0 0 0 chr12 121192979 121192999 -23089490 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 900 249 85 105 chr12 121192999 121193028 -23089461 - L2 LINE L2 -258 3055 3027 1043 124 0 12 chr12 121193028 121193189 -23089300 - L1PA10 LINE L1 -11 6157 5999 900 249 85 105 chr12 121193189 121193526 -23088963 - L2 LINE L2 -286 3027 2702 2050 219 34 59 chr12 121193545 121194142 -23088347 - L1ME3 LINE L1 -30 6132 5551 2126 178 64 5 chr12 121194145 121194584 -23087905 - L1MB7 LINE L1 -12 6172 5708 647 283 4 78 chr12 121194586 121194786 -23087703 - L2 LINE L2 -649 2665 2483 1583 78 5 0 chr12 121194786 121194992 -23087497 + L1PA7 LINE L1 5945 6151 -3 647 283 4 78 chr12 121194992 121195021 -23087468 - L2 LINE L2 -831 2483 2453 353 338 56 12 chr12 121195134 121195294 -23087195 + MIR3 SINE MIR 14 180 -28 576 252 52 19 chr12 121195695 121195850 -23086639 + MIR3 SINE MIR 1 160 -48 716 279 88 20 chr12 121195850 121196144 -23086345 + MER102a DNA MER1_type 1 314 -16 240 173 39 19 chr12 121196174 121196226 -23086263 + L3 LINE CR1 1524 1576 -1 1921 145 10 3 chr12 121196353 121196657 -23085832 - AluJo SINE Alu -6 306 1 1020 224 100 26 chr12 121196697 121197116 -23085373 + MER113 DNA MER1_type? 1 450 -71 1054 271 130 38 chr12 121197118 121198048 -23084441 - L1MEd LINE L1 -2993 3433 2418 1039 213 33 14 chr12 121198048 121198259 -23084230 - MER58A DNA MER1_type -6 218 4 302 257 59 59 chr12 121198274 121198410 -23084079 - L1MEd LINE L1 -4038 2388 2253 470 220 72 129 chr12 121198847 121199532 -23082957 - L1MEd LINE L1 -948 1839 1083 522 213 14 97 chr12 121199533 121199645 -23082844 - MER63 DNA MER1_type 0 1061 972 1644 177 0 3 chr12 121199645 121199928 -23082561 + AluJo SINE Alu 1 282 -30 522 213 14 97 chr12 121199928 121200022 -23082467 - MER63 DNA MER1_type -89 972 872 865 106 0 0 chr12 121200023 121200146 -23082343 - AluSx SINE Alu -13 297 175 912 87 0 0 chr12 121200146 121200261 -23082228 - AluSx SINE Alu -198 115 1 681 187 86 0 chr12 121200261 121200400 -23082089 - MER63 DNA MER1_type -181 881 731 371 85 0 0 chr12 121200410 121200457 -23082032 - MER63 DNA MER1_type -1014 47 1 265 296 28 0 chr12 121200540 121200611 -23081878 - L1MEd LINE L1 -5451 965 893 1322 226 14 7 chr12 121200816 121201103 -23081386 - AluJo SINE Alu -13 299 11 2500 243 63 32 chr12 121201118 121202045 -23080444 - L1ME2 LINE L1 -77 6070 5112 318 225 78 70 chr12 121202061 121202190 -23080299 - L1ME2 LINE L1 -5970 149 20 21 0 0 0 chr12 121202438 121202459 -23080030 + AT_rich Low_complexity Low_complexity 1 21 0 205 167 0 0 chr12 121203057 121203093 -23079396 - MIR SINE MIR -77 131 96 29 0 0 0 chr12 121203757 121203786 -23078703 + AT_rich Low_complexity Low_complexity 1 29 0 274 336 8 37 chr12 121204261 121204395 -23078094 + MIR SINE MIR 63 192 -70 271 363 20 14 chr12 121204564 121204710 -23077779 + MIR3 SINE MIR 55 201 -7 425 103 15 0 chr12 121204937 121205005 -23077484 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 679 322 61 57 chr12 121205005 121205412 -23077077 - L2 LINE L2 -1 3271 2863 216 191 0 24 chr12 121205646 121205688 -23076801 + GA-rich Low_complexity Low_complexity 5 45 0 199 343 96 28 chr12 121206045 121206223 -23076266 + MIR3 SINE MIR 16 205 -3 1120 271 188 30 chr12 121206423 121206791 -23075698 - MLT1H LTR MaLR 0 549 90 1944 148 0 3 chr12 121206791 121207096 -23075393 + AluSx SINE Alu 1 304 -8 1120 271 188 30 chr12 121207096 121207195 -23075294 - MLT1H LTR MaLR -459 90 8 24 0 0 0 chr12 121207212 121207236 -23075253 + AT_rich Low_complexity Low_complexity 1 24 0 1594 141 3 23 chr12 121207268 121207573 -23074916 - L1MA4 LINE L1 -2 6298 6000 484 295 16 0 chr12 121207573 121207695 -23074794 + MER5A DNA MER1_type 60 183 -6 739 186 40 0 chr12 121208151 121208275 -23074214 + FLAM_A SINE Alu 5 133 0 463 291 171 0 chr12 121208471 121208646 -23073843 + MIR SINE MIR 2 206 -56 360 316 140 7 chr12 121208644 121208780 -23073709 - MIR SINE MIR -89 173 20 * 273 135 0 0 chr12 121208966 121209018 -23073471 + (TC)n Simple_repeat Simple_repeat 1 52 0 588 321 31 9 chr12 121209390 121209614 -23072875 - MIR SINE MIR -14 248 20 462 291 44 13 chr12 121209885 121210043 -23072446 - MIR SINE MIR -44 218 56 261 288 131 26 chr12 121211016 121211169 -23071320 + L3 LINE CR1 1322 1490 -87 2265 221 48 33 chr12 121211174 121211754 -23070735 + MLT1E LTR MaLR 5 593 0 2240 185 114 22 chr12 121211812 121212304 -23070185 - MLT1F LTR MaLR -5 537 1 501 211 5 174 chr12 121212452 121212642 -23069847 - MER69 DNA AcHobo -17 2509 3 747 260 107 35 chr12 121212762 121213227 -23069262 - L2 LINE L2 -6 3307 2772 587 180 27 0 chr12 121213227 121213338 -23069151 - L1MB5 LINE L1 0 6174 6061 747 260 107 35 chr12 121213338 121213391 -23069098 - L2 LINE L2 -541 2772 2724 699 269 6 0 chr12 121213977 121214137 -23068352 + MIR SINE MIR 40 200 -62 285 264 16 72 chr12 121214307 121214432 -23068057 - Charlie8 DNA MER1_type -2269 148 31 221 337 166 6 chr12 121214567 121214736 -23067753 - MIR SINE MIR -15 247 52 630 304 32 27 chr12 121215508 121215728 -23066761 + MIR SINE MIR 34 254 -8 369 62 0 0 chr12 121216494 121216542 -23065947 + (TG)n Simple_repeat Simple_repeat 2 49 0 636 208 73 47 chr12 121216631 121216823 -23065666 + L2 LINE L2 3117 3313 0 886 266 62 4 chr12 121217158 121217399 -23065090 + MIR SINE MIR 8 262 0 579 218 14 35 chr12 121218211 121218353 -23064136 - MIR SINE MIR -40 222 84 952 262 60 54 chr12 121219007 121219490 -23062999 - MLT1H1 LTR MaLR 0 555 18 1926 140 10 0 chr12 121220632 121220924 -23061565 + AluSx SINE Alu 1 295 -17 264 200 32 116 chr12 121221047 121221142 -23061347 + MIR3 SINE MIR 97 183 -25 1115 167 32 19 chr12 121221142 121221358 -23061131 - MER20 DNA MER1_type 0 219 1 1046 227 27 35 chr12 121221445 121221705 -23060784 - MIR SINE MIR 0 262 5 562 281 113 30 chr12 121221709 121221912 -23060577 - MIR SINE MIR -6 256 37 704 282 34 14 chr12 121222222 121222431 -23060058 + MIR SINE MIR 31 243 -19 257 171 0 14 chr12 121222974 121223044 -23059445 + GA-rich Low_complexity Low_complexity 1 69 0 273 57 0 0 chr12 121223564 121223599 -23058890 + (TG)n Simple_repeat Simple_repeat 2 36 0 205 254 0 18 chr12 121223631 121223686 -23058803 + (TG)n Simple_repeat Simple_repeat 2 55 0 816 293 61 12 chr12 121223844 121224090 -23058399 - MIR SINE MIR 0 262 5 186 71 0 0 chr12 121224132 121224160 -23058329 + (TG)n Simple_repeat Simple_repeat 2 29 0 2106 179 117 9 chr12 121224364 121224817 -23057672 + MLT1D LTR MaLR 2 503 -2 1800 159 19 13 chr12 121225072 121225380 -23057109 + AluJo SINE Alu 1 310 -2 233 285 126 26 chr12 121225473 121225624 -23056865 + L2 LINE L2 2796 2961 -353 523 264 104 22 chr12 121225651 121225833 -23056656 + L2 LINE L2 3117 3313 0 481 203 71 93 chr12 121226455 121226637 -23055852 - L1ME4a LINE L1 0 6121 5944 242 247 82 52 chr12 121226789 121226886 -23055603 + MER5A DNA MER1_type 4 103 -86 253 245 0 19 chr12 121228291 121228344 -23054145 - MIR3 SINE MIR -52 156 105 757 278 26 10 chr12 121228618 121228812 -23053677 + MIR SINE MIR 2 198 -64 2401 76 0 0 chr12 121228817 121229120 -23053369 + AluY SINE Alu 1 303 -8 735 204 0 29 chr12 121229136 121229273 -23053216 + AluJo SINE Alu 14 146 -166 920 218 20 15 chr12 121229294 121229496 -23052993 + AluJo SINE Alu 86 288 -24 238 218 64 39 chr12 121229515 121229593 -23052896 + MIR SINE MIR 183 262 0 416 247 167 37 chr12 121230202 121230364 -23052125 + MER5A DNA MER1_type 1 183 -6 1999 127 3 7 chr12 121230403 121230702 -23051787 - AluSx SINE Alu -12 300 3 659 254 138 5 chr12 121230705 121230894 -23051595 + MIR SINE MIR 49 262 0 397 306 16 0 chr12 121230964 121231085 -23051404 - L2 LINE L2 0 3272 3150 2141 97 7 3 chr12 121231256 121231554 -23050935 + AluSc SINE Alu 1 299 -10 203 274 147 32 chr12 121231709 121231804 -23050685 + MER5A DNA MER1_type 1 106 -83 258 200 0 0 chr12 121231905 121231950 -23050539 - MER5A DNA MER1_type -77 112 68 * 363 286 46 81 chr12 121231931 121232301 -23050188 - L2 LINE L2 -788 2526 2170 757 240 93 103 chr12 121234537 121235062 -23047427 - LTR33 LTR ERVL -1 520 1 209 289 0 161 chr12 121235169 121235318 -23047171 + MIR SINE MIR 22 146 -62 259 234 0 0 chr12 121236419 121236466 -23046023 + L2 LINE L2 3211 3257 -15 238 313 16 0 chr12 121237201 121237265 -23045224 - L2 LINE L2 0 3313 3249 733 311 0 33 chr12 121237968 121238209 -23044280 - MIR SINE MIR -10 252 20 2172 163 15 10 chr12 121238260 121238625 -23043864 - L1MB3 LINE L1 -1 6182 5813 840 88 96 0 chr12 121238625 121238750 -23043739 + MER85 DNA T2_type 1 137 -2 2172 163 15 10 chr12 121238750 121238783 -23043706 - L1MB3 LINE L1 -370 5813 5782 273 152 61 30 chr12 121238786 121238885 -23043604 + (TA)n Simple_repeat Simple_repeat 1 102 0 313 231 33 55 chr12 121238888 121238979 -23043510 - L1MC4 LINE L1 -1340 6702 6614 2550 190 21 16 chr12 121239003 121239814 -23042675 - L1MB3 LINE L1 -392 5788 4974 617 303 66 8 chr12 121240233 121240477 -23042012 - MIR SINE MIR 0 262 5 367 279 199 0 chr12 121240731 121240905 -23041584 + MIR SINE MIR 58 262 0 364 252 163 49 chr12 121240929 121241052 -23041437 + L2 LINE L2 3136 3272 0 858 258 67 9 chr12 121241361 121241586 -23040903 + MIR SINE MIR 24 261 -1 295 296 136 28 chr12 121241526 121241702 -23040787 - MIR SINE MIR -21 241 47 * 637 236 78 10 chr12 121241760 121241957 -23040532 - MIR SINE MIR -12 250 39 181 273 0 0 chr12 121242522 121242566 -23039923 - MIR SINE MIR -55 153 110 1111 222 8 21 chr12 121243025 121243259 -23039230 + MIR SINE MIR 32 262 0 740 190 113 31 chr12 121243321 121243516 -23038973 - MIR SINE MIR -24 238 28 337 246 85 39 chr12 121243547 121243677 -23038812 - MER5A DNA MER1_type -15 174 39 399 184 0 0 chr12 121244161 121244248 -23038241 - L1MB4 LINE L1 0 6180 6094 440 186 0 0 chr12 121244256 121244326 -23038163 + L1M3 LINE L1 5576 5645 -535 483 100 0 0 chr12 121244475 121244545 -23037944 + (CA)n Simple_repeat Simple_repeat 2 71 0 637 298 11 0 chr12 121244919 121245119 -23037370 - MIR SINE MIR 0 262 62 1104 274 86 17 chr12 121245498 121245849 -23036640 - L2 LINE L2 -8 3305 2931 418 311 68 23 chr12 121245850 121245982 -23036507 - L2 LINE L2 -1 3271 3134 305 282 24 12 chr12 121246083 121246168 -23036321 + L2 LINE L2 3187 3272 0 697 234 6 13 chr12 121246905 121247063 -23035426 + MIR SINE MIR 23 179 -83 444 266 9 0 chr12 121247065 121247174 -23035315 - MER94 DNA DNA -9 125 16 489 268 94 0 chr12 121247462 121247600 -23034889 - MIR SINE MIR -49 213 63 316 324 20 0 chr12 121247603 121247705 -23034784 - MIR SINE MIR -55 207 104 2728 121 11 38 chr12 121247716 121248162 -23034327 - Tigger2a DNA MER2_type 0 434 1 833 223 83 9 chr12 121248480 121248702 -23033787 - MIR SINE MIR 0 262 20 333 104 0 0 chr12 121250892 121250940 -23031549 - MADE1 DNA Mariner 0 80 33 631 184 30 87 chr12 121250941 121251119 -23031370 - L1M3 LINE L1 -378 5793 5626 332 263 66 29 chr12 121251119 121251256 -23031233 - L1ME4a LINE L1 -236 5885 5744 568 278 42 37 chr12 121251565 121251806 -23030683 - L1ME LINE L1 -370 5794 5553 2821 227 81 4 chr12 121251820 121252525 -23029964 - L1ME3A LINE L1 -8 6162 5404 354 276 46 74 chr12 121252543 121252675 -23029814 - L1ME LINE L1 -313 5808 5674 1432 108 7 95 chr12 121252675 121252970 -23029519 - L1MA2 LINE L1 0 6304 6036 354 276 46 74 chr12 121252970 121253120 -23029369 - L1ME LINE L1 -447 5674 5534 2264 155 0 12 chr12 121253368 121253709 -23028780 - MER1B DNA MER1_type 0 337 1 292 263 168 11 chr12 121253799 121253894 -23028595 + MIR SINE MIR 34 143 -65 2820 238 63 7 chr12 121253949 121254722 -23027767 + L1ME3 LINE L1 5345 6161 -1 624 266 83 0 chr12 121255273 121255465 -23027024 + MIR SINE MIR 42 249 -13 1023 199 43 0 chr12 121255549 121255760 -23026729 + MIR SINE MIR 1 220 -42 246 293 21 107 chr12 121255818 121255958 -23026531 - MER5A DNA MER1_type -4 174 47 209 293 150 20 chr12 121255953 121256100 -23026389 - MIR3 SINE MIR -39 169 4 * 260 194 111 28 chr12 121256592 121256664 -23025825 + MIR3 SINE MIR 109 186 -22 563 209 39 8 chr12 121256780 121256909 -23025580 + MIR SINE MIR 44 176 -86 224 183 0 72 chr12 121258182 121258277 -23024212 - MIR SINE MIR -83 125 42 590 295 51 32 chr12 121258526 121258554 -23023935 + MIR SINE MIR 10 36 -226 1140 272 104 9 chr12 121258554 121258977 -23023512 - LTR16B LTR ERVL 0 464 2 590 295 51 32 chr12 121258977 121259165 -23023324 + MIR SINE MIR 36 230 -32 394 218 0 0 chr12 121259267 121259345 -23023144 + MIR SINE MIR 77 154 -108 1247 256 98 37 chr12 121259356 121259786 -23022703 - LTR16B LTR ERVL 0 464 9 222 331 36 50 chr12 121260402 121260541 -23021948 - MIR SINE MIR -78 184 48 1813 173 0 3 chr12 121260601 121260914 -23021575 - AluJo SINE Alu 0 312 1 289 174 0 0 chr12 121260914 121260960 -23021529 - L2 LINE L2 -6 3307 3262 386 320 199 9 chr12 121260969 121261200 -23021289 - L2 LINE L2 -338 2976 2702 567 261 170 5 chr12 121261322 121261540 -23020949 + MIR SINE MIR 8 261 -1 408 249 160 61 chr12 121261848 121262061 -23020428 + L1ME4a LINE L1 5804 6037 -84 2040 109 3 0 chr12 121262183 121262487 -23020002 - AluSx SINE Alu 0 305 1 315 71 0 0 chr12 121264219 121264261 -23018228 + (CA)n Simple_repeat Simple_repeat 2 43 0 242 289 23 70 chr12 121264555 121264683 -23017806 + CT-rich Low_complexity Low_complexity 6 127 0 202 204 0 0 chr12 121265140 121265184 -23017305 + CT-rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 121265295 121265318 -23017171 + AT_rich Low_complexity Low_complexity 1 23 0 230 250 0 0 chr12 121266035 121266079 -23016410 - MIR SINE MIR -2 260 217 376 273 55 77 chr12 121266275 121266458 -23016031 - MIR3 SINE MIR -7 201 23 2066 127 0 0 chr12 121266604 121266904 -23015585 - AluSx SINE Alu -12 300 1 2200 123 0 0 chr12 121267144 121267454 -23015035 + AluSx SINE Alu 1 310 -2 657 225 13 0 chr12 121267630 121267781 -23014708 - MER117 DNA MER1_type -43 154 2 494 259 165 0 chr12 121268011 121268181 -23014308 + MIR SINE MIR 53 250 -12 642 178 0 8 chr12 121268656 121268774 -23013715 + L1MA3 LINE L1 6189 6305 0 2098 119 3 3 chr12 121268782 121269084 -23013405 + AluSq SINE Alu 1 302 -11 2244 85 20 3 chr12 121269143 121269448 -23013041 + AluSg SINE Alu 1 310 0 212 211 19 19 chr12 121269469 121269521 -23012968 + MIR SINE MIR 65 116 -92 21 36 0 0 chr12 121269935 121269963 -23012526 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 121269999 121270020 -23012469 + AT_rich Low_complexity Low_complexity 1 21 0 769 188 0 0 chr12 121270052 121270185 -23012304 - FLAM_C SINE Alu 0 133 1 1724 126 15 23 chr12 121270202 121270526 -23011963 - MER4A LTR ERV1 -26 638 261 622 71 31 31 chr12 121270526 121270624 -23011865 - MER4A LTR ERV1 -566 98 1 3909 110 66 27 chr12 121270629 121271230 -23011259 - MER4A-int LTR ERV1 -1 6597 5966 1585 219 56 43 chr12 121271230 121271673 -23010816 + LTR2 LTR ERV1 1 449 0 3909 110 66 27 chr12 121271673 121271736 -23010753 - MER4A-int LTR ERV1 -632 5966 5907 1567 224 12 29 chr12 121271891 121272184 -23010305 + L1M4 LINE L1 2639 2924 -3222 2006 131 0 0 chr12 121272184 121272481 -23010008 + AluJo SINE Alu 1 297 -15 1567 224 12 29 chr12 121272481 121272603 -23009886 + L1M4 LINE L1 2924 3047 -3099 272 143 20 0 chr12 121272606 121272655 -23009834 + L1MC1 LINE L1 5994 6043 -290 1480 166 75 4 chr12 121272657 121273027 -23009462 - MER66A LTR ERV1 -3 475 27 1317 163 50 35 chr12 121273034 121273317 -23009172 + L1MC2 LINE L1 6043 6329 -15 1196 179 9 0 chr12 121273318 121273536 -23008953 + AluJo SINE Alu 89 308 -4 240 311 74 20 chr12 121273605 121273753 -23008736 + L1ME4a LINE L1 5947 6102 -19 180 0 0 0 chr12 121274369 121274389 -23008100 + (GA)n Simple_repeat Simple_repeat 1 20 0 190 256 85 49 chr12 121274485 121274567 -23007922 + MER5A DNA MER1_type 105 189 0 347 250 0 0 chr12 121274696 121274764 -23007725 + MIR SINE MIR 71 138 -124 1033 180 63 27 chr12 121274774 121274996 -23007493 - MER61E LTR ERV1 0 569 340 249 196 0 39 chr12 121275040 121275091 -23007398 - MER61E LTR ERV1 -404 165 117 180 247 65 65 chr12 121275234 121275307 -23007182 + MIR SINE MIR 160 232 -30 714 262 78 29 chr12 121275307 121275551 -23006938 + MIR SINE MIR 4 259 -3 214 356 0 0 chr12 121276309 121276410 -23006079 + MIR SINE MIR 91 191 -71 1351 193 3 41 chr12 121276462 121276757 -23005732 + AluJo SINE Alu 1 284 -28 457 244 63 55 chr12 121276786 121276913 -23005576 + MER119 DNA MER1_type 7 134 -449 291 268 71 31 chr12 121276981 121277108 -23005381 + MER119 DNA MER1_type 451 582 -1 2154 128 0 0 chr12 121277171 121277476 -23005013 + AluSx SINE Alu 1 305 -7 740 279 162 10 chr12 121277504 121277986 -23004503 - L2 LINE L2 -189 3124 2553 382 340 6 19 chr12 121278362 121278521 -23003968 + G-rich Low_complexity Low_complexity 2 158 0 522 184 61 0 chr12 121278524 121278622 -23003867 + L2 LINE L2 3210 3313 0 198 103 0 0 chr12 121278629 121278658 -23003831 + (CA)n Simple_repeat Simple_repeat 2 30 0 299 270 0 22 chr12 121278724 121278813 -23003676 + MIR SINE MIR 52 138 -124 245 264 38 159 chr12 121278899 121279138 -23003351 - MIR SINE MIR 0 262 53 1611 170 0 7 chr12 121279141 121279452 -23003037 + AluJb SINE Alu 1 309 0 252 188 21 0 chr12 121279484 121279532 -23002957 + L2 LINE L2 3265 3313 0 619 301 11 23 chr12 121279678 121279854 -23002635 + MER20B DNA MER1_type 2 175 -608 1135 273 112 22 chr12 121280036 121280855 -23001634 - L1MEd LINE L1 -4584 1726 796 27 0 0 0 chr12 121280858 121280885 -23001604 + AT_rich Low_complexity Low_complexity 1 27 0 6405 126 15 29 chr12 121281034 121281825 -23000664 - L1PB1 LINE L1 0 6151 5350 1311 54 0 6 chr12 121281825 121281991 -23000498 - L1PA4 LINE L1 0 6155 5991 6405 126 15 29 chr12 121281991 121282917 -22999572 - L1PB1 LINE L1 -801 5350 4442 464 318 82 26 chr12 121282919 121283152 -22999337 - L1MEd LINE L1 -5295 824 579 428 323 92 18 chr12 121283163 121283327 -22999162 - MIR SINE MIR -70 192 17 1112 204 19 28 chr12 121283328 121283544 -22998945 - MER58A DNA MER1_type -1 223 10 447 337 25 10 chr12 121283918 121284114 -22998375 - MIR SINE MIR -12 250 52 772 295 4 13 chr12 121284207 121284471 -22998018 - MIR SINE MIR 0 262 3 358 241 0 46 chr12 121285016 121285124 -22997365 - MIR SINE MIR 0 262 160 1914 135 77 14 chr12 121285134 121285666 -22996823 - L1PB4 LINE L1 -7 6167 5568 542 231 82 8 chr12 121285667 121285801 -22996688 - MIR SINE MIR -115 147 4 1287 246 52 45 chr12 121285959 121286386 -22996103 - LTR16A LTR ERVL 0 450 21 358 282 121 20 chr12 121286657 121286806 -22995683 - MIR3 SINE MIR -29 179 16 621 150 0 44 chr12 121287065 121287178 -22995311 - L2 LINE L2 0 3313 3206 209 167 28 0 chr12 121287210 121287246 -22995243 - L2 LINE L2 -82 3231 3195 1147 201 78 45 chr12 121287355 121287664 -22994825 + MER33 DNA MER1_type 6 324 0 620 292 10 21 chr12 121287880 121288072 -22994417 - MIR SINE MIR -62 200 11 627 192 67 17 chr12 121288132 121288252 -22994237 - MLT2B1 LTR ERVL -234 286 161 * 864 110 8 0 chr12 121288251 121288378 -22994111 - MLT2B2 LTR ERVL -387 128 1 590 344 14 22 chr12 121288550 121288826 -22993663 - ERVL LTR ERVL -2370 3394 3121 * 1824 269 78 27 chr12 121288821 121289453 -22993036 - ERVL LTR ERVL -2667 2329 1666 566 200 221 47 chr12 121289683 121289918 -22992571 - ERVL LTR ERVL -3672 1324 1049 897 187 0 6 chr12 121289927 121290093 -22992396 - AluJo SINE Alu -125 187 23 2748 158 45 12 chr12 121290185 121290845 -22991644 - L1M3 LINE L1 -379 5789 5107 1605 161 11 0 chr12 121290856 121291129 -22991360 + L1M3 LINE L1 4849 5124 -1022 956 279 66 50 chr12 121291137 121291761 -22990728 - L1M3 LINE L1 -1164 4982 4349 388 298 64 68 chr12 121292509 121292626 -22989863 + MIR SINE MIR 28 144 -118 1761 134 4 0 chr12 121292626 121292905 -22989584 + AluJo SINE Alu 37 316 0 388 298 64 68 chr12 121292905 121293020 -22989469 + MIR SINE MIR 144 261 -1 329 282 13 0 chr12 121293025 121293103 -22989386 - L2 LINE L2 -6 3266 3188 572 200 0 18 chr12 121293263 121293373 -22989116 - FLAM_C SINE Alu -34 109 2 4259 131 175 28 chr12 121293443 121294434 -22988055 - MER11B LTR ERVK 0 1236 1 369 219 0 42 chr12 121294731 121294827 -22987662 - MLT1J2 LTR MaLR 0 450 359 728 254 206 26 chr12 121295485 121295950 -22986539 - MLT1H LTR MaLR 0 549 1 924 225 0 0 chr12 121296630 121296799 -22985690 - MIR SINE MIR -13 249 81 499 235 7 59 chr12 121296959 121297014 -22985475 - MIR SINE MIR -37 171 115 3073 124 2 2 chr12 121297014 121297442 -22985047 + MSTA LTR MaLR 1 428 0 499 235 7 59 chr12 121297442 121297563 -22984926 - MIR SINE MIR -93 115 3 325 250 22 22 chr12 121298282 121298374 -22984115 - MIR SINE MIR -12 250 159 1045 282 13 0 chr12 121298395 121298629 -22983860 + MIR SINE MIR 13 249 -13 213 270 140 20 chr12 121298634 121298734 -22983755 - MIR SINE MIR -119 143 32 447 268 80 9 chr12 121298755 121298867 -22983622 - MIR SINE MIR -56 152 33 207 204 0 0 chr12 121299217 121299266 -22983223 + CT-rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr12 121299266 121299295 -22983194 + AT_rich Low_complexity Low_complexity 1 29 0 2202 121 0 3 chr12 121299395 121299708 -22982781 + AluSx SINE Alu 1 312 0 184 308 19 0 chr12 121299743 121299795 -22982694 - L2 LINE L2 -19 3253 3201 * 648 205 47 47 chr12 121299780 121299951 -22982538 - MIR SINE MIR -89 173 3 371 247 0 35 chr12 121300002 121300087 -22982402 + MIR SINE MIR 80 161 -101 1052 189 104 69 chr12 121300418 121300690 -22981799 - MER58B DNA MER1_type -2083 337 51 2181 121 16 0 chr12 121300690 121300997 -22981492 + AluSq SINE Alu 1 312 -1 1052 189 104 69 chr12 121300997 121301042 -22981447 - MER58B DNA MER1_type -2369 51 9 316 333 106 0 chr12 121301056 121301188 -22981301 - L1MC4 LINE L1 -1 8041 7896 2253 98 51 0 chr12 121301250 121301691 -22980798 + AluSx SINE Alu 2 457 0 359 292 43 43 chr12 121302020 121302181 -22980308 + L2 LINE L2 3133 3293 -20 225 0 0 0 chr12 121302181 121302206 -22980283 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2148 128 0 0 chr12 121302208 121302496 -22979993 - AluSq SINE Alu -25 288 1 236 296 15 30 chr12 121302527 121302659 -22979830 - L1MEd LINE L1 -5018 1101 972 1151 218 81 60 chr12 121302866 121303251 -22979238 - MSTD LTR MaLR -1 395 3 656 228 48 12 chr12 121304923 121305090 -22977399 + MIR SINE MIR 20 192 -70 503 246 90 0 chr12 121305967 121306101 -22976388 - MIR SINE MIR -98 164 19 198 171 0 0 chr12 121306114 121306155 -22976334 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 370 257 105 0 chr12 121306285 121306390 -22976099 - MIR SINE MIR -63 199 84 2173 142 0 3 chr12 121306393 121306704 -22975785 - AluJb SINE Alu 0 312 3 421 40 0 0 chr12 121306705 121306755 -22975734 - AluJb SINE Alu -176 136 87 353 308 115 8 chr12 121307185 121307315 -22975174 + MIR SINE MIR 92 235 -27 195 260 156 13 chr12 121307431 121307508 -22974981 + MIR SINE MIR 51 138 -70 2196 138 0 0 chr12 121307806 121308110 -22974379 + AluSx SINE Alu 1 304 -8 784 200 0 0 chr12 121308127 121308252 -22974237 + FAM SINE Alu 1 125 -60 1288 145 60 5 chr12 121308252 121308452 -22974037 + AluJo SINE Alu 85 295 -17 282 233 14 0 chr12 121309000 121309073 -22973416 + MIR SINE MIR 54 127 -81 428 217 6 127 chr12 121309392 121309514 -22972975 + MIR SINE MIR 117 215 -47 1374 199 47 36 chr12 121309514 121309815 -22972674 + AluJo SINE Alu 1 304 -8 428 217 6 127 chr12 121309815 121309858 -22972631 + MIR SINE MIR 215 262 0 348 133 0 0 chr12 121309858 121309918 -22972571 + (TTA)n Simple_repeat Simple_repeat 2 61 0 186 43 0 0 chr12 121310013 121310036 -22972453 + (CA)n Simple_repeat Simple_repeat 2 24 0 1990 148 11 0 chr12 121310036 121310320 -22972169 - AluJb SINE Alu -25 287 1 666 269 77 6 chr12 121310340 121310522 -22971967 - MIR SINE MIR -1 261 67 735 278 65 23 chr12 121310580 121310796 -22971693 + MIR SINE MIR 12 236 -26 1889 115 78 0 chr12 121310808 121311078 -22971411 - AluSx SINE Alu -21 291 1 359 253 67 48 chr12 121311799 121312116 -22970373 - L1M LINE L1 -768 5378 5072 2393 108 0 0 chr12 121312116 121312423 -22970066 + AluSx SINE Alu 2 308 -4 444 282 12 16 chr12 121312700 121312882 -22969607 + MIR3 SINE MIR 13 193 -15 900 179 0 0 chr12 121312931 121313076 -22969413 + FRAM SINE Alu 1 145 -31 23 0 0 0 chr12 121313076 121313099 -22969390 + AT_rich Low_complexity Low_complexity 1 23 0 304 164 30 45 chr12 121314212 121314279 -22968210 - MER5B DNA MER1_type -8 170 105 1480 209 99 14 chr12 121314356 121314782 -22967707 - L1ME3 LINE L1 -88 6074 5613 214 100 0 0 chr12 121314820 121314850 -22967639 + MER5B DNA MER1_type 143 172 -6 674 255 7 0 chr12 121314854 121315003 -22967486 - MIR SINE MIR -98 164 15 2259 113 0 23 chr12 121315299 121315608 -22966881 + AluSx SINE Alu 1 302 -10 236 268 0 18 chr12 121315763 121315819 -22966670 + MER91 DNA MER1_type 135 189 -1 214 277 10 79 chr12 121315819 121315875 -22966614 + MIR SINE MIR 105 153 -55 462 255 171 67 chr12 121316477 121316824 -22965665 + L2 LINE L2 2698 3107 -206 2432 94 0 0 chr12 121316824 121317131 -22965358 + AluSq SINE Alu 3 309 -4 462 255 171 67 chr12 121317131 121317277 -22965212 + L2 LINE L2 3107 3236 -77 213 250 18 18 chr12 121317281 121317337 -22965152 - L2 LINE L2 -1 3271 3216 661 276 138 50 chr12 121318380 121318802 -22963687 - L1MEd LINE L1 -3013 3116 2732 1936 108 10 61 chr12 121318802 121319098 -22963391 + AluSx SINE Alu 3 283 -29 661 276 138 50 chr12 121319098 121319429 -22963060 - L1MEd LINE L1 -3397 2732 2297 262 331 45 8 chr12 121319704 121319837 -22962652 - HAL1 LINE L1 -762 1745 1608 39453 67 4 5 chr12 121320079 121321343 -22961146 - L1PA5 LINE L1 -6 6148 4883 2306 93 0 19 chr12 121321343 121321681 -22960808 - AluY SINE Alu 0 311 1 39453 67 4 5 chr12 121321681 121326573 -22955916 - L1PA5 LINE L1 -1271 4883 2 1258 275 49 75 chr12 121326592 121327483 -22955006 - L1MEd LINE L1 -4862 1257 390 675 254 136 13 chr12 121327619 121327847 -22954642 - MIR SINE MIR -3 259 4 384 267 96 27 chr12 121328693 121328880 -22953609 + MLT1K LTR MaLR 323 522 -66 1911 172 0 3 chr12 121328887 121329178 -22953311 - AluJb SINE Alu -18 294 5 263 213 175 12 chr12 121329273 121329353 -22953136 - L2 LINE L2 0 3272 3180 398 267 92 8 chr12 121329525 121329656 -22952833 + MIR3 SINE MIR 59 200 -8 1080 233 118 5 chr12 121330594 121330968 -22951521 + LTR16A1 LTR ERVL 28 443 -14 247 253 13 27 chr12 121331050 121331125 -22951364 - MIR SINE MIR -72 190 117 1245 274 171 15 chr12 121331671 121332150 -22950339 - MLT1K LTR MaLR -9 579 26 304 248 73 18 chr12 121332281 121332370 -22950119 + MIR3 SINE MIR 74 168 -40 470 203 39 92 chr12 121332370 121332523 -22949966 + MER5B DNA MER1_type 1 145 -33 281 195 59 0 chr12 121332677 121332755 -22949734 - MIR SINE MIR -92 116 76 599 247 98 23 chr12 121333158 121333332 -22949157 + MER91B DNA MER1_type 1 187 -3 366 276 0 0 chr12 121333337 121333424 -22949065 + MIR SINE MIR 49 135 -73 289 261 98 22 chr12 121333520 121333612 -22948877 - L2 LINE L2 0 3313 3215 1734 183 0 7 chr12 121333734 121334029 -22948460 - AluJo SINE Alu -19 293 1 913 268 16 16 chr12 121334099 121334409 -22948080 + MER113 DNA MER1_type? 210 519 -2 354 191 244 26 chr12 121334817 121334932 -22947557 + MIR SINE MIR 113 252 -10 1103 144 0 31 chr12 121335436 121335599 -22946890 - MER53 DNA DNA 0 189 31 2041 116 33 7 chr12 121335599 121335900 -22946589 - AluSq SINE Alu -4 309 1 1103 144 0 31 chr12 121335900 121335931 -22946558 - MER53 DNA DNA -158 31 1 372 324 0 29 chr12 121336039 121336149 -22946340 + MER117 DNA MER1_type 33 140 -57 1185 176 44 9 chr12 121336149 121336376 -22946113 + MER46A DNA MER2_type 2 236 0 372 324 0 29 chr12 121336376 121336401 -22946088 + MER117 DNA MER1_type 140 164 -33 230 302 0 0 chr12 121336404 121336467 -22946022 + MER117 DNA MER1_type 109 171 -26 180 279 0 0 chr12 121337154 121337215 -22945274 + (TG)n Simple_repeat Simple_repeat 2 62 0 492 303 34 17 chr12 121337496 121337674 -22944815 + MER117 DNA MER1_type 2 182 -15 260 210 0 32 chr12 121338159 121338221 -22944268 - LTR33A LTR ERVL -6 517 458 281 345 49 38 chr12 121339491 121339755 -22942734 + L1M4 LINE L1 4526 4792 -1354 645 248 68 24 chr12 121339755 121339961 -22942528 + HERV16 LTR ERVL 266 480 -4516 306 0 0 0 chr12 121339965 121339999 -22942490 + (TG)n Simple_repeat Simple_repeat 2 35 0 423 119 59 40 chr12 121340003 121340104 -22942385 - L1MB7 LINE L1 0 6184 6082 1744 187 35 93 chr12 121340156 121340669 -22941820 - L1MB7 LINE L1 -89 6095 5659 2937 180 18 2 chr12 121340669 121341179 -22941310 - MLT2B1 LTR ERVL 0 520 3 1744 187 35 93 chr12 121341179 121341374 -22941115 - L1MB7 LINE L1 -525 5659 5454 2180 282 72 38 chr12 121341408 121341504 -22940985 + HERV16 LTR ERVL 501 592 -4404 2299 112 3 0 chr12 121341504 121341807 -22940682 - AluSx SINE Alu -8 304 1 2180 282 72 38 chr12 121341807 121342754 -22939735 + HERV16 LTR ERVL 592 1579 -3417 1829 146 7 4 chr12 121342977 121343257 -22939232 + AluJb SINE Alu 1 281 -31 310 154 77 0 chr12 121343265 121343369 -22939120 + (TA)n Simple_repeat Simple_repeat 2 113 0 764 240 44 66 chr12 121343370 121343543 -22938946 + L1MC4 LINE L1 7741 7845 -150 1876 137 0 32 chr12 121343543 121343856 -22938633 + AluJb SINE Alu 1 303 -9 764 240 44 66 chr12 121343856 121344002 -22938487 + L1MC4 LINE L1 7845 7993 -2 402 309 0 24 chr12 121344010 121344133 -22938356 + MIR SINE MIR 21 140 -122 2152 156 29 36 chr12 121344224 121344641 -22937848 - MLT2D LTR ERVL 0 414 1 291 205 108 0 chr12 121344950 121345033 -22937456 + MIR SINE MIR 45 136 -72 544 284 113 5 chr12 121345105 121345299 -22937190 - MIR SINE MIR -32 230 16 538 186 21 79 chr12 121345996 121346136 -22936353 + MIR SINE MIR 56 187 -75 236 309 71 12 chr12 121346611 121346695 -22935794 - MIR SINE MIR -172 90 2 1192 223 94 31 chr12 121346714 121346941 -22935548 - L1ME3A LINE L1 -11 6159 5897 440 250 65 9 chr12 121346941 121347049 -22935440 + MER81 DNA DNA 1 114 0 1192 223 94 31 chr12 121347049 121347202 -22935287 - L1ME3A LINE L1 -273 5897 5755 14355 180 38 45 chr12 121347203 121350301 -22932188 - L1MA4 LINE L1 -4 7358 4252 2129 123 3 0 chr12 121350301 121350610 -22931879 - AluSq SINE Alu -3 310 1 14355 180 38 45 chr12 121350610 121352910 -22929579 - L1MA4 LINE L1 -3110 4252 1938 865 206 6 0 chr12 121352912 121353087 -22929402 + FRAM SINE Alu 1 176 0 2565 279 96 6 chr12 121353091 121353899 -22928590 - L1MA4 LINE L1 -5276 1933 1109 281 265 24 0 chr12 121353914 121353997 -22928492 - L1ME3A LINE L1 -419 5747 5663 401 294 212 0 chr12 121354632 121354778 -22927711 - MER5A DNA MER1_type 0 189 13 2574 143 10 2 chr12 121355312 121355712 -22926777 - MER57A LTR ERV1 0 403 1 989 206 6 6 chr12 121355801 121355976 -22926513 + MER41D LTR ERV1 382 556 -1 4037 96 44 19 chr12 121355985 121356127 -22926362 - MER4B LTR ERV1 0 610 473 2617 90 34 6 chr12 121356127 121356481 -22926008 + THE1B LTR MaLR 1 364 0 4037 96 44 19 chr12 121356481 121356933 -22925556 - MER4B LTR ERV1 -137 473 1 676 267 117 51 chr12 121356952 121357213 -22925276 + L2 LINE L2 2472 2714 -558 5515 117 61 9 chr12 121357213 121358071 -22924418 - MER4D LTR ERV1 -1 902 1 676 267 117 51 chr12 121358071 121358321 -22924168 + L2 LINE L2 2714 3014 -258 1843 128 14 75 chr12 121358407 121358776 -22923713 - MER4A LTR ERV1 0 664 261 680 81 10 20 chr12 121358776 121358875 -22923614 - MER4A LTR ERV1 -566 98 1 272 339 144 0 chr12 121358900 121359018 -22923471 + L2 LINE L2 3138 3272 0 244 162 15 29 chr12 121359025 121359093 -22923396 + (TGGA)n Simple_repeat Simple_repeat 3 69 0 1753 176 20 0 chr12 121359198 121359504 -22922985 + AluJo SINE Alu 1 312 0 261 83 0 0 chr12 121359508 121359544 -22922945 + (GGGGA)n Simple_repeat Simple_repeat 5 40 0 295 347 118 7 chr12 121360381 121360525 -22921964 + MIR SINE MIR 100 259 -3 1370 166 58 25 chr12 121360684 121360962 -22921527 + AluJo SINE Alu 1 287 -25 216 182 0 0 chr12 121361004 121361048 -22921441 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 2722 136 19 0 chr12 121361069 121361480 -22921009 + LOR1b LTR ERV1 43 461 0 2058 130 0 0 chr12 121361500 121361807 -22920682 - AluSx SINE Alu -5 307 1 1465 248 49 67 chr12 121362601 121362911 -22919578 - L1ME3 LINE L1 -2 6160 5863 1807 145 7 0 chr12 121362911 121363187 -22919302 - AluJb SINE Alu -34 278 1 1465 248 49 67 chr12 121363187 121363429 -22919060 - L1ME3 LINE L1 -299 5863 5618 264 247 74 0 chr12 121363502 121363583 -22918906 - L1ME3 LINE L1 -565 5605 5519 3582 155 39 28 chr12 121363586 121364220 -22918269 - LTR39 LTR ERV1 0 783 143 892 146 6 61 chr12 121364273 121364438 -22918051 - LTR39 LTR ERV1 -627 156 1 307 229 0 0 chr12 121364438 121364499 -22917990 - L1ME3 LINE L1 -645 5519 5459 201 302 52 43 chr12 121365173 121365289 -22917200 - MIR3 SINE MIR -78 130 14 1321 226 69 62 chr12 121365581 121366045 -22916444 - MLT1C LTR MaLR 0 467 1 568 240 82 97 chr12 121366841 121366992 -22915497 - L1MC4 LINE L1 -1 8041 7889 809 116 7 51 chr12 121366992 121367130 -22915359 - FLAM_C SINE Alu -1 132 1 568 240 82 97 chr12 121367130 121367390 -22915099 - L1MC4 LINE L1 -153 7889 7636 393 188 0 0 chr12 121367560 121367645 -22914844 + (CA)n Simple_repeat Simple_repeat 1 85 0 261 192 0 0 chr12 121367646 121367698 -22914791 - MER4-int LTR ERV1 -5436 1162 1111 492 229 18 0 chr12 121367699 121367865 -22914624 + (CA)n Simple_repeat Simple_repeat 1 169 0 282 164 15 45 chr12 121368079 121368146 -22914343 - MLT1D LTR MaLR -3 502 438 1624 123 78 11 chr12 121368147 121368415 -22914074 + AluJb SINE Alu 1 286 -26 398 295 42 0 chr12 121368428 121368523 -22913966 - L1MC4 LINE L1 -1330 6712 6614 375 311 0 0 chr12 121368443 121368533 -22913956 + L1MC4 LINE L1 6614 6703 -1339 * 360 322 0 0 chr12 121368529 121368619 -22913870 + L1MC4 LINE L1 6614 6703 -1339 * 388 273 23 0 chr12 121368543 121368631 -22913858 - L1MC4 LINE L1 -1339 6703 6614 497 201 6 46 chr12 121368631 121368834 -22913655 - MLT1D LTR MaLR -174 331 159 1621 154 0 31 chr12 121368835 121369128 -22913361 + AluJo SINE Alu 7 290 -22 878 150 7 7 chr12 121369141 121369288 -22913201 + L1PA16 LINE L1 6015 6161 -5 25 31 0 0 chr12 121369290 121369322 -22913167 + AT_rich Low_complexity Low_complexity 1 32 0 346 225 62 0 chr12 121369328 121369408 -22913081 - MLT1D LTR MaLR -328 177 93 * 656 213 7 15 chr12 121369407 121369543 -22912946 + MLT1C LTR MaLR 333 467 0 674 250 108 39 chr12 121370416 121370676 -22911813 - MLT1C LTR MaLR -184 283 6 198 103 0 0 chr12 121371451 121371480 -22911009 + (GGA)n Simple_repeat Simple_repeat 1 29 0 375 151 27 27 chr12 121371502 121371575 -22910914 + MER58 DNA MER1_type 2345 2417 -3 916 107 23 73 chr12 121372490 121372633 -22909856 + AluSg/x SINE Alu 138 287 -25 210 37 0 0 chr12 121372633 121372660 -22909829 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 916 107 23 73 chr12 121372660 121372671 -22909818 + AluSg/x SINE Alu 287 285 -27 1731 124 45 51 chr12 121372671 121372788 -22909701 + AluJo SINE Alu 1 117 -195 281 26 26 0 chr12 121372788 121372826 -22909663 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1731 124 45 51 chr12 121372826 121373022 -22909467 + AluJo SINE Alu 117 312 0 916 107 23 73 chr12 121373022 121373043 -22909446 + AluSg/x SINE Alu 284 305 -7 594 243 156 0 chr12 121373092 121373265 -22909224 + MER3 DNA MER1_type 1 200 -9 278 146 0 0 chr12 121374170 121374211 -22908278 - MER20 DNA MER1_type -70 149 109 267 284 79 42 chr12 121374401 121374572 -22907917 + MIR SINE MIR 80 262 0 2081 107 0 7 chr12 121375713 121376013 -22906476 - AluSx SINE Alu -14 298 1 626 134 62 9 chr12 121376522 121376634 -22905855 - MER20 DNA MER1_type -70 149 32 846 188 100 6 chr12 121377035 121377205 -22905284 - MER20 DNA MER1_type 0 219 34 331 290 43 58 chr12 121378276 121378432 -22904057 + MER21B LTR ERV1 1 197 -408 * 1710 246 59 64 chr12 121378405 121379050 -22903439 + MER21B LTR ERV1 98 739 -124 25 65 0 0 chr12 121379165 121379211 -22903278 + AT_rich Low_complexity Low_complexity 1 46 0 2016 137 3 3 chr12 121379407 121379720 -22902769 + AluSq SINE Alu 1 313 0 504 950 553 0 chr12 121379933 121380155 -22902334 + L1MC5 LINE L1 6971 6481 -1511 3469 103 9 64 chr12 121380155 121380530 -22901959 - LTR26B LTR ERV1 0 531 137 222 62 0 0 chr12 121380530 121380562 -22901927 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1755 148 0 4 chr12 121380568 121380845 -22901644 - AluJb SINE Alu -36 276 1 3469 103 9 64 chr12 121380845 121381024 -22901465 - LTR26B LTR ERV1 -399 132 1 504 950 553 0 chr12 121381024 121381103 -22901386 + L1MC5 LINE L1 6480 7255 -737 1691 174 3 7 chr12 121381147 121381457 -22901032 - AluJb SINE Alu -1 311 3 1881 109 7 18 chr12 121383288 121383571 -22898918 + AluSx SINE Alu 6 285 -27 256 158 0 0 chr12 121383717 121383755 -22898734 + MLT1E2 LTR MaLR 9 46 -459 * 320 89 0 0 chr12 121383753 121383798 -22898691 - MADE1 DNA Mariner -34 46 2 1176 249 74 3 chr12 121383798 121384123 -22898366 + MLT1E2 LTR MaLR 158 505 -121 1286 173 126 15 chr12 121384125 121384396 -22898093 - MLT1D LTR MaLR -204 301 1 1900 127 70 59 chr12 121384401 121384614 -22897875 - THE1C LTR MaLR 0 375 155 2283 89 13 0 chr12 121384614 121384916 -22897573 + AluSc SINE Alu 1 306 -3 1900 127 70 59 chr12 121384916 121385073 -22897416 - THE1C LTR MaLR -220 155 1 309 221 26 0 chr12 121385078 121385155 -22897334 - L2 LINE L2 -1085 2229 2151 804 204 18 0 chr12 121385161 121385328 -22897161 + FRAM SINE Alu 1 170 -6 949 60 0 87 chr12 121385571 121385720 -22896769 + AluSq/x SINE Alu 1 136 -177 1908 114 3 46 chr12 121385721 121386045 -22896444 + AluSx SINE Alu 3 312 0 219 305 105 38 chr12 121386433 121386538 -22895951 - MIR SINE MIR -115 147 36 706 113 0 35 chr12 121386538 121386653 -22895836 - MLT1D LTR MaLR -8 497 387 549 220 79 75 chr12 121386714 121386928 -22895561 - MLT1D LTR MaLR -121 384 170 1198 258 32 24 chr12 121386928 121386963 -22895526 + L1ME3 LINE L1 5634 5667 -495 2370 144 48 22 chr12 121386963 121387380 -22895109 + MSTA LTR MaLR 1 428 0 1198 258 32 24 chr12 121387380 121387720 -22894769 + L1ME3 LINE L1 5667 6012 -150 331 281 49 79 chr12 121387825 121387989 -22894500 - L1M LINE L1 -2386 5422 5264 1972 120 3 13 chr12 121388324 121388625 -22893864 - AluSx SINE Alu -14 298 1 210 328 120 8 chr12 121388761 121388886 -22893603 + L2 LINE L2 2941 3079 -193 2766 131 24 5 chr12 121389139 121389559 -22892930 - MSTA LTR MaLR 0 428 1 2490 157 66 9 chr12 121389621 121389867 -22892622 + LTR47A LTR ERVL 1 283 -169 2882 210 12 68 chr12 121389867 121390427 -22892062 + LTR8 LTR ERV1 1 512 -179 2281 79 0 23 chr12 121390427 121390731 -22891758 - AluSg SINE Alu -13 297 1 2882 210 12 68 chr12 121390731 121390902 -22891587 + LTR8 LTR ERV1 512 691 0 2490 157 66 9 chr12 121390902 121391082 -22891407 + LTR47A LTR ERVL 283 451 -1 180 229 0 0 chr12 121391434 121391469 -22891020 - MIR SINE MIR -65 197 163 886 170 48 0 chr12 121391521 121391686 -22890803 + MER3 DNA MER1_type 1 126 -83 573 216 50 110 chr12 121391696 121391774 -22890715 + MIR SINE MIR 57 138 -124 1800 105 15 197 chr12 121391774 121391838 -22890651 + MLT1B LTR MaLR 1 75 -315 1930 113 42 0 chr12 121391838 121392122 -22890367 - AluSx SINE Alu -16 296 1 1800 105 15 197 chr12 121392122 121392534 -22889955 + MLT1B LTR MaLR 75 390 0 573 216 50 110 chr12 121392534 121392557 -22889932 + MIR SINE MIR 138 161 -101 1758 143 23 33 chr12 121392557 121392857 -22889632 + AluJo SINE Alu 1 297 -15 573 216 50 110 chr12 121392857 121392972 -22889517 + MIR SINE MIR 161 261 -1 358 285 60 14 chr12 121392953 121393102 -22889387 - MIR SINE MIR -69 139 6 * 2945 159 30 0 chr12 121393388 121393860 -22888629 - MER66B LTR ERV1 0 486 1 2116 154 0 0 chr12 121394117 121394428 -22888061 - AluSx SINE Alu -1 311 1 1400 110 8 8 chr12 121394702 121394822 -22887667 - L1MA8 LINE L1 -3 6288 6169 1954 143 137 8 chr12 121394822 121395201 -22887288 + MSTA LTR MaLR 1 428 0 1400 110 8 8 chr12 121395201 121395325 -22887164 - L1MA8 LINE L1 -121 6170 6044 230 306 0 14 chr12 121395326 121395398 -22887091 + MIR3 SINE MIR 117 187 -21 1795 194 0 0 chr12 121395845 121396138 -22886351 + AluJo SINE Alu 1 293 -19 2122 132 7 3 chr12 121396800 121397096 -22885393 - AluSx SINE Alu -13 299 3 236 241 35 0 chr12 121397097 121397155 -22885334 - MIR3 SINE MIR -51 157 98 482 155 48 0 chr12 121397155 121397239 -22885250 - AluS SINE Alu -223 89 2 1834 139 0 8 chr12 121397257 121397516 -22884973 - AluSx SINE Alu -55 257 1 457 192 67 0 chr12 121397518 121397622 -22884867 - MIR3 SINE MIR -54 154 44 235 253 0 69 chr12 121398093 121398180 -22884309 + CT-rich Low_complexity Low_complexity 6 86 0 1641 204 68 108 chr12 121398658 121399373 -22883116 + L1MB4 LINE L1 4497 5183 -963 3140 136 0 16 chr12 121399378 121399805 -22882684 + MER66B LTR ERV1 3 422 -64 2460 78 8 60 chr12 121399805 121399989 -22882500 + THE1B LTR MaLR 1 156 -208 2287 104 3 0 chr12 121399989 121400287 -22882202 + AluSx SINE Alu 1 299 -13 2460 78 8 60 chr12 121400287 121400486 -22882003 + THE1B LTR MaLR 156 364 0 3140 136 0 16 chr12 121400486 121400550 -22881939 + MER66B LTR ERV1 422 486 0 3831 181 44 22 chr12 121400561 121400831 -22881658 + L1MB4 LINE L1 5196 5459 -721 2229 134 0 0 chr12 121400831 121401129 -22881360 - AluSx SINE Alu -14 298 1 3831 181 44 22 chr12 121401129 121401540 -22880949 + L1MB4 LINE L1 5459 5906 -274 1729 169 0 46 chr12 121401540 121401847 -22880642 + AluJb SINE Alu 1 293 -19 3831 181 44 22 chr12 121401847 121402128 -22880361 + L1MB4 LINE L1 5906 6179 -1 2100 137 3 34 chr12 121402244 121402566 -22879923 + AluJb SINE Alu 1 312 0 281 248 168 53 chr12 121402676 121402789 -22879700 + FLAM_C SINE Alu 8 133 0 558 187 32 97 chr12 121403058 121403144 -22879345 - MER45A DNA AcHobo -1403 178 104 1846 162 0 3 chr12 121403144 121403455 -22879034 + AluJo SINE Alu 1 310 0 558 187 32 97 chr12 121403455 121403522 -22878967 - MER45A DNA AcHobo -1477 104 34 238 321 108 28 chr12 121403771 121403983 -22878506 + MLT1L LTR MaLR 212 440 -175 2294 92 26 20 chr12 121404195 121404500 -22877989 - AluSx SINE Alu -5 307 1 348 227 197 0 chr12 121404650 121404782 -22877707 - MIR SINE MIR -20 242 85 416 301 71 44 chr12 121405227 121405453 -22877036 - MIR SINE MIR -13 249 18 2110 145 6 13 chr12 121405572 121406058 -22876431 + AluSx SINE Alu 1 312 0 488 16 16 0 chr12 121406075 121406136 -22876353 + (GAAA)n Simple_repeat Simple_repeat 1 62 0 1698 180 11 72 chr12 121406290 121406663 -22875826 - MLT1A1 LTR MaLR -15 350 1 2257 118 0 0 chr12 121406768 121407064 -22875425 + AluSx SINE Alu 3 298 -14 899 202 108 29 chr12 121407064 121407333 -22875156 - Charlie4a DNA MER1_type -1665 296 3 1495 161 46 7 chr12 121407494 121407799 -22874690 - L1MA9 LINE L1 -340 5972 5656 301 247 0 14 chr12 121408178 121408251 -22874238 + MLT1J2 LTR MaLR 365 436 -14 2126 117 3 7 chr12 121408346 121408637 -22873852 - AluSx SINE Alu -22 290 1 848 246 12 48 chr12 121408667 121408919 -22873570 - MIR SINE MIR -5 257 15 2309 107 7 0 chr12 121408927 121409227 -22873262 + AluSg SINE Alu 1 302 -8 318 265 54 61 chr12 121409328 121409386 -22873103 + MIR SINE MIR 15 72 -190 1412 186 119 57 chr12 121409386 121409858 -22872631 + MLT1D LTR MaLR 2 502 -3 318 265 54 61 chr12 121409858 121409926 -22872563 + MIR SINE MIR 72 139 -123 2311 123 3 0 chr12 121409926 121410236 -22872253 + AluSx SINE Alu 1 311 -1 318 265 54 61 chr12 121410236 121410314 -22872175 + MIR SINE MIR 139 221 -41 869 221 31 77 chr12 121410829 121411062 -22871427 + MLT1L LTR MaLR 9 251 -364 1714 166 0 22 chr12 121411062 121411340 -22871149 + AluJo SINE Alu 14 285 -27 276 30 0 0 chr12 121411340 121411373 -22871116 + (GA)n Simple_repeat Simple_repeat 2 34 0 869 221 31 77 chr12 121411373 121411535 -22870954 + MLT1L LTR MaLR 249 440 -175 1527 183 81 0 chr12 121411548 121411870 -22870619 + MLT2D LTR ERVL 1 348 -66 581 154 30 24 chr12 121411889 121412058 -22870431 + GA-rich Low_complexity Low_complexity 5 174 0 1206 249 61 39 chr12 121412309 121412559 -22869930 - L2 LINE L2 -17 3296 3053 1986 127 124 26 chr12 121412559 121412946 -22869543 - MSTA LTR MaLR -2 426 2 1206 249 61 39 chr12 121412946 121413231 -22869258 - L2 LINE L2 -260 3053 2748 1564 161 3 95 chr12 121413234 121413551 -22868938 + AluJo SINE Alu 18 305 -7 1952 162 24 0 chr12 121413601 121413897 -22868592 - AluSx SINE Alu -9 303 1 297 261 0 0 chr12 121414222 121414291 -22868198 + MIR SINE MIR 70 138 -70 213 259 0 19 chr12 121414413 121414467 -22868022 + L2 LINE L2 3186 3238 -75 672 121 10 0 chr12 121414471 121414570 -22867919 - MLT1B LTR MaLR 0 390 291 1034 126 20 0 chr12 121414842 121414993 -22867496 - AluSq SINE Alu -45 268 115 2020 93 4 14 chr12 121415371 121415651 -22866838 - AluY SINE Alu 0 311 35 1118 88 0 0 chr12 121415651 121415787 -22866702 - AluSq SINE Alu -176 136 1 1511 147 120 19 chr12 121415958 121416217 -22866272 + AluJo SINE Alu 12 296 -16 586 76 0 0 chr12 121417366 121417445 -22865044 - AluSg/x SINE Alu -19 290 212 475 278 139 19 chr12 121417451 121417660 -22864829 + L2 LINE L2 3025 3258 -14 2441 100 0 3 chr12 121417687 121417997 -22864492 + AluSp SINE Alu 1 309 -4 1316 176 9 14 chr12 121418008 121418230 -22864259 + AluJo SINE Alu 6 226 -86 989 175 0 90 chr12 121418256 121418467 -22864022 + AluJo SINE Alu 16 207 -105 243 0 0 0 chr12 121418502 121418529 -22863960 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1306 174 46 95 chr12 121418529 121418827 -22863662 + L1MC/D LINE L1 5286 5506 -672 2053 91 0 50 chr12 121418827 121419125 -22863364 - AluSx SINE Alu -1 311 29 1306 174 46 95 chr12 121419125 121419317 -22863172 + L1MC/D LINE L1 5506 5706 -472 401 276 212 10 chr12 121419340 121419543 -22862946 + MIR SINE MIR 18 261 -1 273 326 8 30 chr12 121419584 121419716 -22862773 + L1P LINE L1 4887 5015 -1131 859 150 0 0 chr12 121419739 121419872 -22862617 + FLAM_C SINE Alu 1 133 0 247 288 98 42 chr12 121420129 121420344 -22862145 + L1MC4a LINE L1 5261 5487 -2321 355 82 0 0 chr12 121420345 121420394 -22862095 + HY3 scRNA scRNA 1 49 -52 784 288 54 37 chr12 121420411 121420762 -22861727 + L1MC4a LINE L1 5536 5892 -1916 2253 125 0 0 chr12 121420762 121421057 -22861432 + AluSx SINE Alu 1 295 -17 24 0 0 0 chr12 121421057 121421081 -22861408 + AT_rich Low_complexity Low_complexity 1 24 0 1822 166 0 3 chr12 121421158 121421441 -22861048 + AluJb SINE Alu 1 282 -30 360 0 0 0 chr12 121421448 121421488 -22861001 + (CA)n Simple_repeat Simple_repeat 1 40 0 680 262 33 53 chr12 121421488 121421732 -22860757 + MIR SINE MIR 20 258 -4 241 169 31 15 chr12 121421732 121421797 -22860692 + (TA)n Simple_repeat Simple_repeat 2 67 0 696 128 0 101 chr12 121421811 121421959 -22860530 - AluJo SINE Alu -178 134 2 1871 174 0 16 chr12 121422123 121422428 -22860061 + AluJo SINE Alu 1 300 -12 309 125 0 0 chr12 121423006 121423062 -22859427 + (CA)n Simple_repeat Simple_repeat 2 57 0 251 104 21 0 chr12 121423249 121423297 -22859192 + (CA)n Simple_repeat Simple_repeat 2 50 0 767 215 16 0 chr12 121424089 121424259 -22858230 + MIR SINE MIR 59 231 -31 2360 95 0 0 chr12 121424359 121424655 -22857834 - AluSx SINE Alu -16 296 1 359 237 28 34 chr12 121424708 121424885 -22857604 + (TATAA)n Simple_repeat Simple_repeat 2 177 0 282 302 51 69 chr12 121424885 121425160 -22857329 - L2 LINE L2 -162 3110 2841 1084 141 37 0 chr12 121425242 121425405 -22857084 - AluJo/FRAM SINE Alu -11 301 133 2253 105 7 0 chr12 121425406 121425702 -22856787 - AluSq SINE Alu -15 298 1 677 296 80 4 chr12 121425745 121425971 -22856518 - MIR SINE MIR 0 262 20 583 190 35 26 chr12 121426093 121426196 -22856293 + L2 LINE L2 3194 3300 -13 192 77 0 0 chr12 121426196 121426222 -22856267 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 583 190 35 26 chr12 121426222 121426234 -22856255 + L2 LINE L2 3300 3310 -3 743 243 201 30 chr12 121427266 121427749 -22854740 + L2 LINE L2 2724 3306 -7 2104 139 3 0 chr12 121428242 121428537 -22853952 + AluSx SINE Alu 2 297 -15 259 232 101 0 chr12 121429262 121429331 -22853158 + MIR SINE MIR 93 168 -94 685 208 0 0 chr12 121429391 121429521 -22852968 - MIR SINE MIR -87 175 46 549 228 101 0 chr12 121429558 121429707 -22852782 - MIR SINE MIR -55 207 44 1283 144 0 0 chr12 121429723 121429911 -22852578 - AluSx SINE Alu -1 309 122 999 120 0 0 chr12 121429945 121430078 -22852411 - AluSx SINE Alu -179 133 1 412 162 111 34 chr12 121430138 121430255 -22852234 - MIR SINE MIR -20 242 117 365 193 71 9 chr12 121430795 121430916 -22851573 - L1MC4 LINE L1 0 8041 7878 462 114 0 0 chr12 121430918 121430988 -22851501 + (TCC)n Simple_repeat Simple_repeat 3 72 0 842 223 65 34 chr12 121430993 121431015 -22851474 - L1MC4 LINE L1 -107 7935 7915 282 29 0 0 chr12 121431015 121431050 -22851439 + (CA)n Simple_repeat Simple_repeat 2 36 0 842 223 65 34 chr12 121431050 121431319 -22851170 - L1MC4 LINE L1 -127 7915 7635 476 223 127 30 chr12 121431327 121431493 -22850996 + MLT1H LTR MaLR 366 547 -2 337 213 75 11 chr12 121431510 121431604 -22850885 - MLT1L LTR MaLR -10 605 506 287 167 0 0 chr12 121431636 121431684 -22850805 - MLT2C1 LTR ERVL 0 397 350 560 185 21 31 chr12 121431701 121431993 -22850496 + CT-rich Low_complexity Low_complexity 1 289 0 712 282 14 14 chr12 121432359 121432572 -22849917 + MIR SINE MIR 49 261 -1 307 269 28 17 chr12 121432628 121432749 -22849740 + MIR SINE MIR 37 154 -63 717 133 72 72 chr12 121432832 121432998 -22849491 + L1MB2 LINE L1 5454 5619 -552 2045 138 14 3 chr12 121433031 121433328 -22849161 + AluSx SINE Alu 1 300 -12 215 74 0 0 chr12 121433328 121433355 -22849134 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 672 134 22 8 chr12 121433355 121433489 -22849000 + GA-rich Low_complexity Low_complexity 4 139 0 686 197 21 7 chr12 121433489 121433631 -22848858 - MLT1B LTR MaLR -25 365 222 457 202 29 10 chr12 121433768 121433793 -22848696 - MLT1B LTR MaLR -235 139 116 1358 94 3 98 chr12 121433793 121434121 -22848368 - AluSx SINE Alu -15 297 1 457 202 29 10 chr12 121434121 121434199 -22848290 - MLT1B LTR MaLR -258 116 34 2681 166 31 20 chr12 121434226 121434776 -22847713 + L1MB2 LINE L1 5615 6170 -1 327 25 0 0 chr12 121434990 121435030 -22847459 + (CA)n Simple_repeat Simple_repeat 2 41 0 373 269 181 5 chr12 121435337 121435486 -22847003 + MIR SINE MIR 24 216 -46 2093 118 14 0 chr12 121435486 121435766 -22846723 + AluSx SINE Alu 11 294 -18 373 269 181 5 chr12 121435766 121435809 -22846680 + MIR SINE MIR 216 250 -12 565 257 64 5 chr12 121436181 121436383 -22846106 + L2 LINE L2 2861 3074 -239 1479 151 0 0 chr12 121436386 121436598 -22845891 + AluJb SINE Alu 85 296 -16 1626 157 56 24 chr12 121436742 121437029 -22845460 + AluJo SINE Alu 1 296 -16 1217 303 35 17 chr12 121437140 121437650 -22844839 - L1ME3A LINE L1 -220 5950 5504 602 277 11 37 chr12 121437650 121437838 -22844651 + L2 LINE L2 3131 3313 0 244 305 68 17 chr12 121437968 121438086 -22844403 - MER5B DNA MER1_type -54 124 1 217 286 0 43 chr12 121438711 121438781 -22843708 + L2 LINE L2 3227 3293 -20 878 271 36 73 chr12 121438838 121439370 -22843119 + L2 LINE L2 2752 3272 0 280 115 0 33 chr12 121439401 121439412 -22843077 + (GGAA)n Simple_repeat Simple_repeat 4 14 -48 2278 121 0 0 chr12 121439412 121439710 -22842779 + AluSc SINE Alu 1 298 -11 280 115 0 33 chr12 121439710 121439759 -22842730 + (GGAA)n Simple_repeat Simple_repeat 14 62 0 851 158 14 5 chr12 121439774 121439989 -22842500 + (TGGA)n Simple_repeat Simple_repeat 1 217 0 616 211 98 69 chr12 121440744 121440974 -22841515 + MIR SINE MIR 18 250 -12 266 262 124 55 chr12 121441031 121441176 -22841313 - L2 LINE L2 -111 3161 3007 313 323 24 16 chr12 121441185 121441309 -22841180 + MIR3 SINE MIR 31 155 -53 202 208 19 0 chr12 121442238 121442291 -22840198 + MIR SINE MIR 84 137 -125 310 197 42 14 chr12 121442428 121442499 -22839990 - L2 LINE L2 0 3313 3241 212 122 24 0 chr12 121442664 121442705 -22839784 + C-rich Low_complexity Low_complexity 4 45 0 965 158 0 0 chr12 121443496 121443635 -22838854 - AluJo SINE Alu -173 139 1 688 248 105 5 chr12 121444259 121444336 -22838153 + MIR SINE MIR 28 96 -166 2070 141 0 16 chr12 121444336 121444641 -22837848 - AluSx SINE Alu -12 300 1 688 248 105 5 chr12 121444641 121444773 -22837716 + MIR SINE MIR 96 258 -4 825 167 25 19 chr12 121444774 121444936 -22837553 + MIR SINE MIR 67 229 -33 251 53 0 26 chr12 121444959 121444997 -22837492 + (ATGGTG)n Simple_repeat Simple_repeat 2 38 0 2048 120 0 17 chr12 121445171 121445470 -22837019 + AluSx SINE Alu 1 294 -18 243 232 12 37 chr12 121446414 121446496 -22835993 + MIR3 SINE MIR 82 161 -47 353 277 46 39 chr12 121446587 121446717 -22835772 + MER5A DNA MER1_type 57 187 -2 1570 178 10 10 chr12 121446736 121447039 -22835450 - AluJo SINE Alu -9 303 1 240 35 0 0 chr12 121449266 121449295 -22833194 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 855 155 0 7 chr12 121449295 121449437 -22833052 - FRAM SINE Alu 0 40 1 726 135 0 0 chr12 121449438 121449542 -22832947 - AluJb SINE Alu -207 105 2 2095 107 3 0 chr12 121449549 121449839 -22832650 - AluSg SINE Alu -19 291 1 1026 216 140 31 chr12 121450187 121450485 -22832004 - L2 LINE L2 0 3313 3049 1838 154 30 0 chr12 121450485 121450783 -22831706 + AluJb SINE Alu 3 309 -3 1026 216 140 31 chr12 121450783 121451096 -22831393 - L2 LINE L2 -264 3049 2633 214 278 19 0 chr12 121451774 121451828 -22830661 - MIR SINE MIR -118 144 90 452 287 0 0 chr12 121452615 121452723 -22829766 + MIR SINE MIR 37 144 -64 815 238 21 5 chr12 121452723 121452912 -22829577 + MER117 DNA MER1_type 6 197 0 1002 117 76 23 chr12 121452950 121453121 -22829368 + L1PA6 LINE L1 5971 6150 -4 1070 231 68 13 chr12 121453122 121453209 -22829280 - L2 LINE L2 -158 3155 3074 1478 190 23 17 chr12 121453209 121453339 -22829150 + AluJo SINE Alu 1 129 -183 234 0 0 0 chr12 121453339 121453365 -22829124 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1478 190 23 17 chr12 121453365 121453534 -22828955 + AluJo SINE Alu 129 302 -10 1070 231 68 13 chr12 121453534 121453855 -22828634 - L2 LINE L2 -239 3074 2709 313 256 23 23 chr12 121454521 121454607 -22827882 + MER117 DNA MER1_type 110 195 -2 290 137 315 0 chr12 121454970 121455043 -22827446 - MIR SINE MIR -54 208 113 233 374 6 0 chr12 121455694 121455860 -22826629 + (TG)n Simple_repeat Simple_repeat 2 168 0 310 222 5 101 chr12 121455934 121456132 -22826357 + (TG)n Simple_repeat Simple_repeat 2 180 0 411 194 32 33 chr12 121456513 121456634 -22825855 - MIR SINE MIR -67 141 71 400 345 36 27 chr12 121456749 121456972 -22825517 - MIR SINE MIR -18 244 20 327 287 70 0 chr12 121457092 121457235 -22825254 + MER103 DNA DNA 4 156 -10 353 261 117 0 chr12 121458688 121458799 -22823690 - L1M4 LINE L1 -925 5221 5098 923 163 35 12 chr12 121458928 121459100 -22823389 + FRAM SINE Alu 1 176 0 464 268 92 7 chr12 121460059 121460212 -22822277 - MIR SINE MIR -55 207 42 455 252 7 42 chr12 121460248 121460391 -22822098 - Charlie8 DNA MER1_type -2249 168 31 2121 103 3 0 chr12 121460419 121460709 -22821780 + AluSg SINE Alu 1 291 -19 726 135 0 0 chr12 121460716 121460820 -22821669 + AluJb SINE Alu 2 105 -207 865 149 0 7 chr12 121460821 121460996 -22821493 + FRAM SINE Alu 1 73 0 1570 178 10 10 chr12 121463223 121463526 -22818963 + AluJo SINE Alu 1 303 -9 343 285 46 39 chr12 121463545 121463675 -22818814 - MER5A DNA MER1_type -2 187 57 243 232 12 37 chr12 121463766 121463848 -22818641 - MIR3 SINE MIR -47 161 82 2048 120 0 17 chr12 121464792 121465091 -22817398 - AluSx SINE Alu -18 294 1 251 53 0 26 chr12 121465265 121465303 -22817186 + (CACCAT)n Simple_repeat Simple_repeat 2 38 0 816 167 25 19 chr12 121465326 121465488 -22817001 - MIR SINE MIR -33 229 67 688 248 105 5 chr12 121465489 121465621 -22816868 - MIR SINE MIR -4 258 96 1944 141 0 16 chr12 121465621 121465926 -22816563 + AluSx SINE Alu 1 300 -12 688 248 105 5 chr12 121465926 121466003 -22816486 - MIR SINE MIR -166 96 28 1817 137 19 39 chr12 121466627 121466769 -22815720 + AluJo SINE Alu 1 144 -168 2000 138 0 0 chr12 121466769 121467066 -22815423 + AluSx SINE Alu 1 297 -15 1817 137 19 39 chr12 121467066 121467230 -22815259 + AluJo SINE Alu 144 301 -11 311 306 51 69 chr12 121467312 121467587 -22814902 + L2 LINE L2 2841 3110 -162 359 237 28 34 chr12 121467587 121467764 -22814725 + (TTATA)n Simple_repeat Simple_repeat 2 177 0 2226 95 0 0 chr12 121467817 121468113 -22814376 + AluSx SINE Alu 1 296 -16 768 215 16 0 chr12 121468213 121468383 -22814106 - MIR SINE MIR -31 231 59 2139 97 10 3 chr12 121468985 121469295 -22813194 - AluSx SINE Alu 0 312 1 684 296 80 4 chr12 121469338 121469564 -22812925 - MIR SINE MIR 0 262 20 584 190 35 26 chr12 121469686 121469789 -22812700 + L2 LINE L2 3194 3300 -13 192 77 0 0 chr12 121469789 121469815 -22812674 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 584 190 35 26 chr12 121469815 121469827 -22812662 + L2 LINE L2 3300 3310 -3 187 265 59 0 chr12 121470082 121470150 -22812339 + MIR SINE MIR 75 146 -62 757 259 238 19 chr12 121470859 121471342 -22811147 + L2 LINE L2 2724 3306 -7 1927 139 7 0 chr12 121471837 121472131 -22810358 + AluSx SINE Alu 2 297 -15 262 232 101 0 chr12 121472855 121472924 -22809565 + MIR SINE MIR 93 168 -94 692 208 0 0 chr12 121472982 121473112 -22809377 - MIR SINE MIR -87 175 46 514 236 108 0 chr12 121473149 121473297 -22809192 - MIR SINE MIR -55 207 44 1219 143 0 0 chr12 121473313 121473502 -22808987 - AluSx SINE Alu 0 312 124 925 128 0 0 chr12 121473538 121473671 -22808818 - AluSx SINE Alu -180 133 1 396 210 109 17 chr12 121473731 121473850 -22808639 - MIR SINE MIR -20 242 113 318 203 43 0 chr12 121474744 121474813 -22807676 + MIR3 SINE MIR 90 161 -47 442 273 68 90 chr12 121475013 121475128 -22807361 + Charlie8 DNA MER1_type 3 119 -211 1761 139 18 0 chr12 121475128 121475409 -22807080 + AluJo SINE Alu 1 286 -26 442 273 68 90 chr12 121475409 121475571 -22806918 + Charlie8 DNA MER1_type 119 274 -56 784 243 62 41 chr12 121475827 121476070 -22806419 + MIR SINE MIR 15 262 0 2137 95 0 20 chr12 121476086 121476390 -22806099 - AluSx SINE Alu -14 298 1 417 318 110 39 chr12 121476856 121477161 -22805328 + L2 LINE L2 2837 3181 -132 1946 120 3 3 chr12 121477161 121477467 -22805022 + AluSx SINE Alu 3 308 0 417 318 110 39 chr12 121477467 121477569 -22804920 + L2 LINE L2 3181 3274 -39 438 205 92 11 chr12 121477753 121477897 -22804592 - MIR SINE MIR -63 145 29 516 258 38 0 chr12 121478037 121478169 -22804320 + MIR SINE MIR 46 182 -80 2030 157 0 3 chr12 121478681 121478993 -22803496 + AluJb SINE Alu 2 312 0 344 231 130 9 chr12 121479012 121479120 -22803369 - MIR SINE MIR -138 124 4 374 255 94 0 chr12 121479870 121479976 -22802513 - MIR SINE MIR -112 150 35 2023 130 33 0 chr12 121480576 121480876 -22801613 + AluSx SINE Alu 1 310 -2 426 169 13 0 chr12 121481857 121481934 -22800555 - MIR SINE MIR -63 145 68 1315 196 80 10 chr12 121482040 121482352 -22800137 - L1MB8 LINE L1 0 6178 5845 328 145 0 79 chr12 121482375 121482431 -22800058 - MER6 DNA MER2_type -58 807 757 1967 155 3 0 chr12 121482431 121482741 -22799748 + AluSx SINE Alu 1 311 -1 328 145 0 79 chr12 121482741 121482760 -22799729 - MER6 DNA MER2_type -108 757 738 * 446 169 0 0 chr12 121482758 121482829 -22799660 - MER6 DNA MER2_type -139 5 -65 1381 146 39 0 chr12 121482829 121483083 -22799406 - L1MB8 LINE L1 -355 5829 5566 821 296 4 18 chr12 121483128 121483354 -22799135 + MIR SINE MIR 12 234 -28 255 274 0 0 chr12 121483398 121483460 -22799029 + MIR SINE MIR 84 145 -117 379 196 80 36 chr12 121484109 121484221 -22798268 - MIR SINE MIR -87 175 59 627 297 38 5 chr12 121484278 121484463 -22798026 + MIR SINE MIR 51 241 -21 1794 256 101 2 chr12 121485291 121485736 -22796753 + MLT1K LTR MaLR 85 573 -15 810 217 27 76 chr12 121486142 121486206 -22796283 - MIR SINE MIR -7 255 189 1899 154 0 3 chr12 121486206 121486511 -22795978 - AluJb SINE Alu -8 304 1 810 217 27 76 chr12 121486511 121486709 -22795780 - MIR SINE MIR -73 189 6 1619 159 0 4 chr12 121486853 121487111 -22795378 - AluJb SINE Alu -53 259 3 978 296 41 41 chr12 121487139 121487873 -22794616 - L1MEc LINE L1 -4952 1358 617 1937 142 3 0 chr12 121488074 121488370 -22794119 - AluSx SINE Alu -15 297 1 1999 136 7 0 chr12 121488425 121488727 -22793762 + AluSx SINE Alu 1 304 -8 429 266 194 31 chr12 121489049 121489271 -22793218 + MIR SINE MIR 4 261 -1 267 326 8 30 chr12 121489312 121489444 -22793045 + L1P LINE L1 4887 5015 -1131 913 150 0 0 chr12 121489467 121489600 -22792889 + FLAM_C SINE Alu 1 133 0 310 327 94 25 chr12 121489648 121489850 -22792639 + L1MC4a LINE L1 5038 5253 -893 251 293 98 42 chr12 121489857 121490072 -22792417 + L1MC4a LINE L1 5261 5487 -2321 353 82 0 0 chr12 121490073 121490122 -22792367 + HY3 scRNA scRNA 1 49 -52 811 302 48 31 chr12 121490139 121490490 -22791999 + L1MC4a LINE L1 5536 5892 -1916 2073 138 3 0 chr12 121490490 121490801 -22791688 + AluSx SINE Alu 1 312 0 1705 166 0 3 chr12 121490885 121491168 -22791321 + AluJb SINE Alu 1 282 -30 360 0 0 0 chr12 121491175 121491215 -22791274 + (CA)n Simple_repeat Simple_repeat 1 40 0 666 262 33 53 chr12 121491215 121491459 -22791030 + MIR SINE MIR 20 258 -4 180 127 55 0 chr12 121491464 121491519 -22790970 + (TA)n Simple_repeat Simple_repeat 1 58 0 754 128 0 101 chr12 121491538 121491686 -22790803 - AluJo SINE Alu -178 134 2 1845 175 0 13 chr12 121491850 121492165 -22790324 + AluJo SINE Alu 1 311 -1 327 121 0 0 chr12 121492731 121492789 -22789700 + (CA)n Simple_repeat Simple_repeat 2 59 0 251 104 21 0 chr12 121492976 121493024 -22789465 + (CA)n Simple_repeat Simple_repeat 2 50 0 336 147 0 0 chr12 121493414 121493489 -22789000 + (CA)n Simple_repeat Simple_repeat 2 76 0 344 307 115 32 chr12 121493510 121493958 -22788531 - L2 LINE L2 0 3272 2784 237 221 15 15 chr12 121495487 121495555 -22786934 - MIR SINE MIR -64 144 77 332 302 34 49 chr12 121495705 121495883 -22786606 + MIR SINE MIR 16 190 -68 626 276 163 35 chr12 121496194 121496439 -22786050 + L2 LINE L2 2857 3069 -244 2286 112 0 3 chr12 121496439 121496752 -22785737 - AluSx SINE Alu 0 312 1 626 276 163 35 chr12 121496752 121496911 -22785578 + L2 LINE L2 3069 3313 0 390 218 20 37 chr12 121497862 121498003 -22784486 + MIR3 SINE MIR 81 262 0 260 263 92 0 chr12 121498976 121499052 -22783437 - MIR3 SINE MIR -49 159 77 672 266 9 52 chr12 121500822 121501055 -22781434 - MIR SINE MIR 0 262 40 * 767 277 9 24 chr12 121501035 121501248 -22781241 + MIR SINE MIR 50 259 -3 1627 114 80 48 chr12 121501870 121502159 -22780330 - AluSq SINE Alu -15 298 1 324 276 23 11 chr12 121502846 121502933 -22779556 + MIR SINE MIR 163 250 -12 850 282 24 16 chr12 121503045 121503297 -22779192 + MIR SINE MIR 8 261 -1 510 261 43 0 chr12 121503716 121503854 -22778635 - MER63A DNA MER1_type -4 206 63 1877 149 3 7 chr12 121504037 121504333 -22778156 + AluJo SINE Alu 1 295 -17 850 144 0 0 chr12 121504335 121504453 -22778036 + FLAM_C SINE Alu 1 118 -15 1989 147 7 0 chr12 121504487 121504793 -22777696 + AluSx SINE Alu 1 308 -4 434 305 73 34 chr12 121504840 121505017 -22777472 + L1ME4a LINE L1 5769 5952 -169 290 309 48 67 chr12 121505020 121505185 -22777304 - L2 LINE L2 -2 3270 3109 598 186 0 186 chr12 121505275 121505490 -22776999 - FAM SINE Alu 0 175 1 1994 117 0 69 chr12 121505493 121505690 -22776799 - AluSx SINE Alu -1 311 145 2033 89 0 0 chr12 121505690 121505961 -22776528 - AluY SINE Alu -6 305 35 1994 117 0 69 chr12 121505961 121506097 -22776392 - AluSx SINE Alu -167 145 1 1435 147 120 19 chr12 121506268 121506527 -22775962 + AluJo SINE Alu 12 296 -16 618 76 0 0 chr12 121507675 121507754 -22774735 - AluSg/x SINE Alu -19 293 215 527 280 136 19 chr12 121507760 121507974 -22774515 + L2 LINE L2 3025 3263 -9 2324 100 0 3 chr12 121507996 121508306 -22774183 + AluSp SINE Alu 1 309 -4 1245 180 9 14 chr12 121508317 121508539 -22773950 + AluJo SINE Alu 6 226 -86 948 175 0 90 chr12 121508565 121508776 -22773713 + AluJo SINE Alu 16 207 -105 243 0 0 0 chr12 121508811 121508838 -22773651 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1324 143 35 177 chr12 121508838 121509136 -22773353 + L1MC/D LINE L1 5286 5488 -754 1941 91 0 50 chr12 121509136 121509434 -22773055 - AluSx SINE Alu -1 311 29 1324 143 35 177 chr12 121509434 121509626 -22772863 + L1MC/D LINE L1 5488 5706 -536 22 35 0 0 chr12 121509626 121509655 -22772834 + AT_rich Low_complexity Low_complexity 1 29 0 2536 169 46 105 chr12 121509655 121509693 -22772796 + L1MD2 LINE L1 5665 5704 -655 1517 179 39 32 chr12 121509693 121509978 -22772511 - AluJb SINE Alu -25 287 1 2536 169 46 105 chr12 121509978 121510250 -22772239 + L1MD2 LINE L1 5704 5990 -369 1801 155 3 7 chr12 121510250 121510541 -22771948 - AluJb SINE Alu -22 290 1 2536 169 46 105 chr12 121510541 121510961 -22771528 + L1MD2 LINE L1 5990 6353 -6 * 2592 203 29 54 chr12 121510949 121510961 -22771528 + L1ME1 LINE L1 5414 5425 -741 1800 158 10 0 chr12 121510961 121511258 -22771231 + AluJb SINE Alu 1 300 -12 2592 203 29 54 chr12 121511258 121511300 -22771189 + L1ME1 LINE L1 5425 5467 -699 2118 107 17 3 chr12 121511300 121511591 -22770898 - AluSx SINE Alu -17 295 1 2592 203 29 54 chr12 121511591 121512299 -22770190 + L1ME1 LINE L1 5467 6158 -8 2058 125 0 3 chr12 121512325 121512629 -22769860 + AluSx SINE Alu 1 303 -9 1927 155 0 7 chr12 121512723 121512752 -22769737 - AluJo SINE Alu -4 308 280 189 0 0 0 chr12 121512752 121512773 -22769716 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1927 155 0 7 chr12 121512773 121513053 -22769436 - AluJo SINE Alu -32 280 1 237 315 54 22 chr12 121513306 121513398 -22769091 + MIR SINE MIR 150 244 -18 2140 106 0 0 chr12 121513404 121513697 -22768792 + AluSx SINE Alu 1 293 -19 272 192 0 0 chr12 121514504 121514573 -22767916 - MIR SINE MIR -62 146 85 185 103 0 0 chr12 121514762 121514791 -22767698 + MIR SINE MIR 118 146 -116 778 277 238 30 chr12 121514826 121515495 -22766994 + L2 LINE L2 2222 2750 -563 207 0 0 0 chr12 121515495 121515518 -22766971 + (TTA)n Simple_repeat Simple_repeat 2 24 0 778 277 238 30 chr12 121515518 121515668 -22766821 + L2 LINE L2 2750 3312 -1 2141 108 0 3 chr12 121515676 121515962 -22766527 + AluSx SINE Alu 3 287 -25 21 0 0 0 chr12 121515963 121515984 -22766505 + AT_rich Low_complexity Low_complexity 1 21 0 1624 144 47 50 chr12 121515987 121516286 -22766203 + AluJo SINE Alu 3 300 -12 286 299 170 14 chr12 121516556 121516703 -22765786 + MIR SINE MIR 72 241 -21 * 588 317 107 39 chr12 121516677 121517059 -22765430 - L2 LINE L2 -37 3235 2828 1933 84 7 28 chr12 121518072 121518358 -22764131 - AluJb SINE Alu -24 288 9 267 231 0 121 chr12 121518371 121518462 -22764027 - MIR SINE MIR -74 188 109 1883 117 32 4 chr12 121518470 121518751 -22763738 + AluJo SINE Alu 1 289 -23 2159 107 0 0 chr12 121519357 121519657 -22762832 + AluSx SINE Alu 2 301 -11 2009 114 28 3 chr12 121520398 121520688 -22761801 - AluSx SINE Alu -14 298 2 418 138 25 12 chr12 121520797 121520877 -22761612 - LTR2B LTR ERV1 0 490 410 672 266 9 52 chr12 121522104 121522337 -22760152 - MIR SINE MIR 0 262 40 * 767 277 9 24 chr12 121522317 121522530 -22759959 + MIR SINE MIR 50 259 -3 1627 114 80 48 chr12 121523152 121523441 -22759048 - AluSq SINE Alu -15 298 1 324 276 23 11 chr12 121524128 121524215 -22758274 + MIR SINE MIR 163 250 -12 850 282 24 16 chr12 121524327 121524579 -22757910 + MIR SINE MIR 8 261 -1 510 261 43 0 chr12 121524998 121525136 -22757353 - MER63A DNA MER1_type -4 206 63 1877 149 3 7 chr12 121525319 121525615 -22756874 + AluJo SINE Alu 1 295 -17 850 144 0 0 chr12 121525617 121525735 -22756754 + FLAM_C SINE Alu 1 118 -15 1989 147 7 0 chr12 121525769 121526075 -22756414 + AluSx SINE Alu 1 308 -4 434 305 73 34 chr12 121526122 121526299 -22756190 + L1ME4a LINE L1 5769 5952 -169 290 309 48 67 chr12 121526302 121526467 -22756022 - L2 LINE L2 -2 3270 3109 571 121 0 0 chr12 121526551 121526634 -22755855 - AluS SINE Alu -6 303 221 * 667 177 27 82 chr12 121526628 121526775 -22755714 - AluSg/x SINE Alu -40 270 132 2229 112 0 10 chr12 121526775 121527089 -22755400 - AluSx SINE Alu -1 311 1 343 202 18 1 chr12 121527288 121527363 -22755126 - MIR3 SINE MIR -37 171 103 2098 234 106 51 chr12 121527884 121528031 -22754458 - L2 LINE L2 -24 3289 3151 2011 100 18 11 chr12 121528031 121528312 -22754177 + AluSx SINE Alu 1 283 -29 2098 234 106 51 chr12 121528312 121529177 -22753312 - L2 LINE L2 -162 3151 2207 428 324 0 7 chr12 121529258 121529394 -22753095 - MIR SINE MIR -113 149 15 204 328 0 15 chr12 121529463 121529530 -22752959 - MIR SINE MIR -109 153 88 259 284 12 0 chr12 121529605 121529686 -22752803 - MER103 DNA DNA -62 104 23 239 291 0 29 chr12 121529808 121529911 -22752578 + (TGAA)n Simple_repeat Simple_repeat 1 100 0 656 237 119 20 chr12 121529945 121530198 -22752291 - L2 LINE L2 0 3313 3036 2166 111 3 0 chr12 121530270 121530567 -22751922 + AluSx SINE Alu 3 300 -12 853 133 0 15 chr12 121530571 121530706 -22751783 + FLAM_C SINE Alu 1 133 0 255 270 0 0 chr12 121530752 121530926 -22751563 + (TGAA)n Simple_repeat Simple_repeat 2 175 0 23 33 0 0 chr12 121531741 121531771 -22750718 + GC_rich Low_complexity Low_complexity 1 30 0 216 244 0 26 chr12 121531889 121531967 -22750522 + (CCG)n Simple_repeat Simple_repeat 2 77 0 49 66 0 0 chr12 121532034 121532125 -22750364 + GC_rich Low_complexity Low_complexity 1 91 0 525 299 118 21 chr12 121532310 121532497 -22749992 - MIR SINE MIR 0 262 58 269 331 81 22 chr12 121532658 121532794 -22749695 - MIR3 SINE MIR -52 156 13 236 359 22 0 chr12 121533421 121533513 -22748976 - MIR3 SINE MIR -10 198 105 394 184 0 120 chr12 121533561 121533600 -22748889 + MIR SINE MIR 35 77 -185 1860 148 37 0 chr12 121533600 121533775 -22748714 - AluSx SINE Alu -4 308 116 333 0 0 0 chr12 121533775 121533812 -22748677 + (TG)n Simple_repeat Simple_repeat 2 38 0 1860 148 37 0 chr12 121533812 121533933 -22748556 - AluSx SINE Alu -196 116 1 394 184 0 120 chr12 121533933 121534018 -22748471 + MIR SINE MIR 77 144 -118 453 36 0 0 chr12 121534656 121534711 -22747778 + (GAATG)n Simple_repeat Simple_repeat 3 57 0 1836 149 7 3 chr12 121534779 121535074 -22747415 + AluJo SINE Alu 3 298 -14 1771 116 54 0 chr12 121535179 121535438 -22747051 + AluSx SINE Alu 35 307 -5 260 293 90 87 chr12 121535530 121535919 -22746570 - L2 LINE L2 -69 3203 2814 1869 142 3 19 chr12 121536668 121536985 -22745504 - AluJo SINE Alu 0 312 1 2336 124 45 16 chr12 121537005 121537384 -22745105 - MLT1B LTR MaLR 0 390 1 2089 117 7 0 chr12 121537423 121537713 -22744776 - AluSx SINE Alu -20 292 1 259 106 0 0 chr12 121537715 121537762 -22744727 + MADE1 DNA Mariner 29 75 -5 299 310 14 7 chr12 121537768 121537913 -22744576 + CT-rich Low_complexity Low_complexity 1 146 0 308 286 9 38 chr12 121537937 121538042 -22744447 + MIR SINE MIR 69 170 -92 256 277 8 76 chr12 121538086 121538205 -22744284 - MIR3 SINE MIR -32 176 66 616 237 29 23 chr12 121538432 121538477 -22744012 - MIR SINE MIR -12 250 207 1988 136 7 3 chr12 121538477 121538772 -22743717 - AluJo SINE Alu -16 296 1 616 237 29 23 chr12 121538772 121538899 -22743590 - MIR SINE MIR -55 207 77 278 280 23 44 chr12 121538947 121539077 -22743412 + MIR SINE MIR 32 145 -63 2002 128 3 3 chr12 121539141 121539437 -22743052 - AluSx SINE Alu -16 296 1 228 322 26 20 chr12 121539565 121539717 -22742772 - L1P LINE L1 -749 5397 5245 1204 228 139 28 chr12 121539780 121540075 -22742414 - L2 LINE L2 0 3313 3052 1884 152 30 0 chr12 121540075 121540372 -22742117 + AluJo SINE Alu 3 308 -4 1204 228 139 28 chr12 121540372 121540708 -22741781 - L2 LINE L2 -261 3052 2611 224 278 19 0 chr12 121541360 121541414 -22741075 - MIR SINE MIR -118 144 90 466 287 0 0 chr12 121542201 121542309 -22740180 + MIR SINE MIR 37 144 -64 762 233 21 5 chr12 121542309 121542498 -22739991 + MER117 DNA MER1_type 6 197 0 960 111 83 33 chr12 121542524 121542705 -22739784 + L1PA6 LINE L1 5961 6150 -4 214 188 31 47 chr12 121542706 121542770 -22739719 - L2 LINE L2 -158 3155 3093 295 254 16 0 chr12 121543215 121543278 -22739211 + MIR SINE MIR 28 91 -171 1349 209 0 27 chr12 121543291 121543587 -22738902 - AluSq SINE Alu -12 301 14 335 272 25 31 chr12 121543633 121543795 -22738694 + (CCA)n Simple_repeat Simple_repeat 2 162 0 560 254 107 73 chr12 121543813 121544018 -22738471 + MIR SINE MIR 2 213 -49 516 225 133 6 chr12 121544034 121544207 -22738282 - MIR SINE MIR -27 235 41 500 225 133 6 chr12 121547092 121547265 -22735224 + MIR SINE MIR 41 235 -27 540 259 107 73 chr12 121547281 121547486 -22735003 - MIR SINE MIR -49 213 2 437 265 27 24 chr12 121547503 121547802 -22734687 + (TGG)n Simple_repeat Simple_repeat 1 300 0 247 226 36 24 chr12 121547883 121547967 -22734522 + (ATGGTG)n Simple_repeat Simple_repeat 5 89 0 1156 181 15 0 chr12 121548251 121548456 -22734033 - MER3 DNA MER1_type 0 209 2 624 288 111 36 chr12 121548683 121549156 -22733333 - L2 LINE L2 0 3272 2763 247 292 157 0 chr12 121549970 121550059 -22732430 + MIR SINE MIR 75 177 -85 199 351 26 0 chr12 121550085 121550162 -22732327 - L2 LINE L2 -5 3267 3189 1971 123 3 16 chr12 121550176 121550485 -22732004 - AluSx SINE Alu -7 305 1 348 24 0 0 chr12 121550509 121550550 -22731939 + (CA)n Simple_repeat Simple_repeat 1 41 0 1511 209 55 6 chr12 121550708 121551033 -22731456 - MER58B DNA MER1_type 0 341 1 312 218 81 0 chr12 121552355 121552442 -22730047 - MIR SINE MIR -72 136 43 760 202 10 66 chr12 121553069 121553267 -22729222 + MIR SINE MIR 57 243 -19 190 323 108 11 chr12 121553744 121553837 -22728652 - MIR SINE MIR -62 146 45 222 169 46 0 chr12 121553964 121554029 -22728460 + CT-rich Low_complexity Low_complexity 2 69 0 203 313 6 44 chr12 121554083 121554265 -22728224 + G-rich Low_complexity Low_complexity 5 179 0 2226 101 3 0 chr12 121554723 121555021 -22727468 + AluSx SINE Alu 1 299 -13 292 278 0 74 chr12 121555036 121555144 -22727345 + MIR SINE MIR 79 178 -84 479 262 33 0 chr12 121555148 121555270 -22727219 - L2 LINE L2 0 3313 3188 264 289 124 0 chr12 121555855 121555952 -22726537 + MIR SINE MIR 30 138 -70 251 300 0 0 chr12 121555952 121556012 -22726477 - Charlie8 DNA MER1_type 0 2417 2358 238 184 0 0 chr12 121556049 121556087 -22726402 + L2 LINE L2 3262 3299 -14 256 256 70 91 chr12 121556095 121556235 -22726254 - Charlie8 DNA MER1_type -105 236 99 1619 163 0 25 chr12 121556235 121556538 -22725951 + AluJb SINE Alu 11 306 0 256 256 70 91 chr12 121556538 121556595 -22725894 - Charlie8 DNA MER1_type -242 99 42 183 80 0 0 chr12 121556661 121556686 -22725803 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 694 342 104 18 chr12 121556854 121557375 -22725114 - L2 LINE L2 -181 3091 2532 317 231 31 176 chr12 121557364 121557619 -22724870 + MIR SINE MIR 44 261 -1 * 384 291 91 33 chr12 121558103 121558313 -22724176 + MIR SINE MIR 33 254 -8 195 273 273 0 chr12 121558400 121558477 -22724012 + MIR SINE MIR 47 144 -118 286 329 68 2 chr12 121558484 121558642 -22723847 + MIR SINE MIR 11 176 -62 215 279 82 0 chr12 121559178 121559239 -22723250 + L3 LINE CR1 1425 1490 -87 637 271 0 0 chr12 121559327 121559478 -22723011 + MIR SINE MIR 104 254 -8 215 365 66 47 chr12 121560680 121560954 -22721535 - L2 LINE L2 -30 3242 2964 477 263 23 23 chr12 121560993 121561126 -22721363 - MIR SINE MIR -13 249 117 2281 102 0 9 chr12 121561167 121561482 -22721007 - AluSx SINE Alu 0 312 1 306 197 179 34 chr12 121561684 121561801 -22720688 - MIR3 SINE MIR -38 170 37 2022 233 115 44 chr12 121562268 121562415 -22720074 - L2 LINE L2 -24 3289 3154 1976 100 18 11 chr12 121562415 121562696 -22719793 + AluSx SINE Alu 1 283 -29 2022 233 115 44 chr12 121562696 121563552 -22718937 - L2 LINE L2 -159 3154 2207 414 290 4 10 chr12 121563633 121563779 -22718710 - MIR SINE MIR -63 145 4 192 244 16 18 chr12 121563838 121563900 -22718589 - MIR SINE MIR -60 148 93 275 222 37 25 chr12 121563980 121564061 -22718428 - MER103 DNA DNA -62 104 23 239 291 0 29 chr12 121564183 121564286 -22718203 + (TGAA)n Simple_repeat Simple_repeat 1 100 0 639 237 119 20 chr12 121564320 121564573 -22717916 - L2 LINE L2 0 3313 3036 2171 107 3 0 chr12 121564645 121564944 -22717545 + AluSx SINE Alu 3 302 -10 848 133 0 15 chr12 121564948 121565083 -22717406 + FLAM_C SINE Alu 1 133 0 264 244 0 0 chr12 121565113 121565240 -22717249 + (TGAA)n Simple_repeat Simple_repeat 2 128 0 439 216 49 0 chr12 121565415 121565517 -22716972 + FLAM_A SINE Alu 10 116 -26 2029 128 0 0 chr12 121565553 121565835 -22716654 - AluSx SINE Alu -30 282 1 871 161 0 0 chr12 121565838 121565981 -22716508 - FLAM_C SINE Alu 0 143 1 1501 176 28 3 chr12 121566021 121566305 -22716184 + AluJo SINE Alu 4 294 -18 224 290 131 17 chr12 121566309 121566485 -22716004 + L2 LINE L2 2770 2965 -349 1163 149 43 24 chr12 121566485 121566693 -22715796 + MER58A DNA MER1_type 1 212 -12 1824 140 10 27 chr12 121566695 121566995 -22715494 + AluSx SINE Alu 1 295 -17 194 360 12 0 chr12 121566999 121567085 -22715404 + L2 LINE L2 2943 3029 -284 188 211 58 39 chr12 121567228 121567280 -22715209 + L2 LINE L2 3261 3313 0 1275 114 16 0 chr12 121567307 121567500 -22714989 + AluSq SINE Alu 1 196 -117 240 158 0 0 chr12 121567603 121567641 -22714848 + Alu SINE Alu 253 290 -10 299 325 125 8 chr12 121567774 121567894 -22714595 - MIR3 SINE MIR -69 139 6 205 306 112 31 chr12 121568640 121568738 -22713751 - L2 LINE L2 -5 3308 3203 1055 255 116 25 chr12 121569043 121569396 -22713093 + MLT1J LTR MaLR 111 495 -16 1878 144 7 0 chr12 121569517 121569808 -22712681 - AluJb SINE Alu -14 298 6 3111 135 22 26 chr12 121569926 121570030 -22712459 + LTR10C LTR ERV1 41 144 -447 2720 12 0 22 chr12 121570030 121570351 -22712138 + AluYb8 SINE Alu 1 314 -4 2330 72 3 13 chr12 121570357 121570663 -22711826 + AluY SINE Alu 1 303 -8 3111 135 22 26 chr12 121570663 121571086 -22711403 + LTR10C LTR ERV1 149 573 -18 603 161 0 0 chr12 121571097 121571190 -22711299 + AluSg/x SINE Alu 203 295 -17 1892 156 0 0 chr12 121571200 121571489 -22711000 + AluJo SINE Alu 1 289 -23 1947 111 0 0 chr12 121571518 121571780 -22710709 + AluSx SINE Alu 31 292 -20 420 311 258 4 chr12 121572936 121573196 -22709293 - LTR33A LTR ERVL -59 464 139 1895 123 55 0 chr12 121573344 121573636 -22708853 - AluSg SINE Alu -2 308 1 1355 125 10 87 chr12 121573707 121573844 -22708645 + L1MD3 LINE L1 7729 7834 -161 1493 172 30 0 chr12 121573844 121574106 -22708383 - AluJo SINE Alu -42 270 1 1355 125 10 87 chr12 121574106 121574256 -22708233 + L1MD3 LINE L1 7834 7994 -1 1709 161 6 38 chr12 121574266 121574583 -22707906 + AluSx SINE Alu 1 307 -5 295 336 144 8 chr12 121574637 121574762 -22707727 + MIR SINE MIR 6 147 -115 940 136 0 0 chr12 121574902 121575034 -22707455 + FLAM_C SINE Alu 1 132 -1 242 268 78 73 chr12 121575096 121575275 -22707214 + L2 LINE L2 3035 3214 -99 221 243 42 122 chr12 121575320 121575509 -22706980 - L2 LINE L2 -815 2499 2326 1057 130 0 30 chr12 121575552 121575721 -22706768 - AluJo SINE Alu -60 252 89 1700 146 18 14 chr12 121576207 121576488 -22706001 + AluJb SINE Alu 1 282 -30 2056 123 7 0 chr12 121576491 121576792 -22705697 - AluSq SINE Alu -10 303 1 252 0 0 0 chr12 121577600 121577628 -22704861 + (A)n Simple_repeat Simple_repeat 1 28 0 1063 90 6 19 chr12 121577662 121577818 -22704671 - L1PA15 LINE L1 0 6165 6012 838 205 27 27 chr12 121577862 121578047 -22704442 - MIR SINE MIR -15 247 63 2035 112 51 0 chr12 121578100 121578396 -22704093 + AluSx SINE Alu 1 311 -1 391 237 0 0 chr12 121578397 121578473 -22704016 - AluJo/FLAM SINE Alu -190 112 37 2161 113 10 6 chr12 121578650 121578961 -22703528 + AluSx SINE Alu 1 312 0 265 244 13 48 chr12 121579546 121579632 -22702857 + MIR SINE MIR 71 152 -65 367 242 11 22 chr12 121579636 121579736 -22702753 + MIR SINE MIR 47 145 -63 5617 118 24 33 chr12 121580222 121581133 -22701356 + L1MC1 LINE L1 5422 6324 -9 1925 115 0 65 chr12 121581207 121581529 -22700960 + AluSx SINE Alu 1 301 -11 1928 214 60 74 chr12 121581764 121581945 -22700544 - L1ME1 LINE L1 -5 6161 5979 1995 146 0 0 chr12 121581945 121582253 -22700236 - AluSx SINE Alu -4 308 1 1928 214 60 74 chr12 121582253 121582339 -22700150 - L1ME1 LINE L1 -187 5979 5893 1230 198 14 5 chr12 121582339 121582556 -22699933 + MER20 DNA MER1_type 1 219 0 2277 68 0 26 chr12 121582559 121582866 -22699623 - AluSp SINE Alu -14 299 1 1651 163 3 30 chr12 121582869 121583164 -22699325 - AluJb SINE Alu -20 292 6 1928 214 60 74 chr12 121583164 121583446 -22699043 - L1ME1 LINE L1 -277 5889 5613 2130 125 0 0 chr12 121583446 121583757 -22698732 - AluSx SINE Alu -1 311 1 1928 214 60 74 chr12 121583757 121583902 -22698587 - L1ME1 LINE L1 -553 5613 5467 568 158 57 57 chr12 121583903 121584080 -22698409 - L1ME1 LINE L1 -798 5348 5172 786 150 0 16 chr12 121584088 121584215 -22698274 - AluSx SINE Alu -8 304 180 270 0 0 0 chr12 121584215 121584245 -22698244 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1968 77 7 57 chr12 121584245 121584545 -22697944 - AluSx SINE Alu -27 285 1 2038 119 7 0 chr12 121584680 121584973 -22697516 - AluSx SINE Alu -15 297 3 188 35 35 0 chr12 121584973 121585002 -22697487 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1498 96 10 0 chr12 121585827 121586026 -22696463 - AluSx SINE Alu -111 201 1 256 287 0 43 chr12 121586501 121586595 -22695894 + MIR SINE MIR 23 112 -150 264 315 130 20 chr12 121586671 121586817 -22695672 + MIR SINE MIR 90 251 -11 1647 143 6 107 chr12 121586824 121587152 -22695337 + AluJo SINE Alu 1 295 -7 1220 145 65 83 chr12 121587446 121587638 -22694851 - AluJo SINE Alu 0 315 129 2271 91 3 0 chr12 121587638 121587935 -22694554 + AluSx SINE Alu 1 298 -14 1220 145 65 83 chr12 121587935 121588062 -22694427 - AluJo SINE Alu -186 129 1 2071 149 40 27 chr12 121588068 121588443 -22694046 - L1MB5 LINE L1 0 6174 5795 524 240 73 91 chr12 121588443 121588636 -22693853 + L2 LINE L2 2702 2890 -424 2129 122 7 0 chr12 121588636 121588940 -22693549 - AluSx SINE Alu -6 306 1 524 240 73 91 chr12 121588940 121589021 -22693468 + L2 LINE L2 2890 2971 -343 * 547 271 128 5 chr12 121589019 121589222 -22693267 + MIR SINE MIR 33 260 -2 910 114 0 50 chr12 121589538 121589678 -22692811 + FLAM_C SINE Alu 1 133 0 215 239 0 0 chr12 121589845 121589891 -22692598 - L2 LINE L2 0 3313 3268 * 300 347 41 47 chr12 121589885 121590055 -22692434 + MIR SINE MIR 75 243 -19 196 286 0 0 chr12 121590412 121590475 -22692014 + L3b LINE CR1 1318 1380 -203 438 317 125 14 chr12 121590556 121590764 -22691725 - MIR SINE MIR -12 250 20 279 279 0 0 chr12 121591217 121591296 -22691193 + GA-rich Low_complexity Low_complexity 3 81 0 22 0 0 0 chr12 121591392 121591414 -22691075 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr12 121591843 121591887 -22690602 + AT_rich Low_complexity Low_complexity 1 44 0 1847 137 0 47 chr12 121591887 121592208 -22690281 + AluJb SINE Alu 1 306 -6 877 102 0 0 chr12 121592215 121592333 -22690156 - FLAM_C SINE Alu -15 118 1 392 284 59 108 chr12 121592338 121592620 -22689869 + Charlie8 DNA MER1_type 66 320 -2097 1978 147 0 0 chr12 121592620 121592919 -22689570 - AluSx SINE Alu -13 299 1 392 284 59 108 chr12 121592919 121593080 -22689409 + Charlie8 DNA MER1_type 320 487 -1930 807 128 0 8 chr12 121593087 121593204 -22689285 + AluJ SINE Alu 2 117 -185 936 151 14 59 chr12 121593242 121593261 -22689228 + AluJb SINE Alu 103 121 -191 2422 50 3 3 chr12 121593261 121593559 -22688930 - AluY SINE Alu -13 298 1 936 151 14 59 chr12 121593559 121593758 -22688731 + AluJb SINE Alu 121 311 -1 269 26 26 0 chr12 121593764 121593802 -22688687 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 282 29 0 0 chr12 121594198 121594233 -22688256 + (CA)n Simple_repeat Simple_repeat 2 36 0 251 305 74 0 chr12 121594364 121594459 -22688030 + MER113 DNA MER1_type? 7 108 -413 226 200 0 36 chr12 121595287 121595342 -22687147 + L1ME LINE L1 5886 5938 -228 660 158 24 16 chr12 121595356 121595483 -22687006 + AluJb SINE Alu 1 128 -184 969 255 207 28 chr12 121596383 121596779 -22685710 + MLT1K LTR MaLR 122 588 0 1463 189 20 27 chr12 121596802 121597098 -22685391 - AluJo SINE Alu -14 298 5 2293 99 0 13 chr12 121597104 121597418 -22685071 - AluSg SINE Alu 0 310 1 1882 136 31 3 chr12 121597418 121597712 -22684777 - AluJo SINE Alu -10 302 1 189 0 0 0 chr12 121597712 121597733 -22684756 + (T)n Simple_repeat Simple_repeat 1 21 0 247 273 65 0 chr12 121598004 121598081 -22684408 - L3 LINE CR1 -541 1036 955 766 213 87 65 chr12 121598250 121598356 -22684133 + MLT1B LTR MaLR 3 105 -285 2218 106 3 0 chr12 121598356 121598667 -22683822 + AluSx SINE Alu 1 312 0 766 213 87 65 chr12 121598667 121598959 -22683530 + MLT1B LTR MaLR 105 336 -54 2048 80 42 0 chr12 121598959 121599248 -22683241 + AluSp SINE Alu 1 301 -12 1215 106 0 0 chr12 121599251 121599412 -22683077 + AluSg/x SINE Alu 136 296 -16 405 103 0 0 chr12 121599412 121599470 -22683019 + MLT1B LTR MaLR 328 385 -5 324 308 87 73 chr12 121599480 121599686 -22682803 - L3 LINE CR1 -899 678 465 1865 145 14 0 chr12 121599686 121599976 -22682513 - AluJb SINE Alu -8 304 11 324 308 87 73 chr12 121599976 121600055 -22682434 - L3 LINE CR1 -1112 465 389 183 314 29 0 chr12 121600076 121600146 -22682343 + MIR SINE MIR 82 153 -55 646 286 34 5 chr12 121600170 121600376 -22682113 - MIR SINE MIR -7 255 44 287 230 40 50 chr12 121600892 121600992 -22681497 + MER20B DNA MER1_type 8 106 -677 443 264 137 0 chr12 121601156 121601338 -22681151 - MIR SINE MIR -50 212 6 1623 165 0 7 chr12 121602368 121602647 -22679842 - AluJo SINE Alu -22 290 14 496 252 20 33 chr12 121602660 121602811 -22679678 - MIR SINE MIR -14 248 100 1509 185 3 32 chr12 121602819 121602961 -22679528 + AluJo SINE Alu 1 146 -166 2251 80 3 0 chr12 121602961 121603250 -22679239 + AluSx SINE Alu 5 294 -18 1509 185 3 32 chr12 121603250 121603421 -22679068 + AluJo SINE Alu 146 305 -7 328 272 29 29 chr12 121603445 121603548 -22678941 - MIR SINE MIR -148 114 12 255 143 24 0 chr12 121603768 121603810 -22678679 + L2 LINE L2 3254 3296 -17 445 281 38 19 chr12 121603883 121604043 -22678446 + MIR SINE MIR 14 176 -86 1732 120 64 14 chr12 121604043 121604326 -22678163 + AluJb SINE Alu 1 297 -15 2132 110 10 0 chr12 121604346 121604646 -22677843 + AluSx SINE Alu 1 303 -9 593 169 108 48 chr12 121604728 121604894 -22677595 - MER58C DNA MER1_type 0 215 40 932 263 58 4 chr12 121604930 121605170 -22677319 + MIR SINE MIR 10 262 0 870 130 14 7 chr12 121605193 121605331 -22677158 - FLAM_C SINE Alu -4 139 1 1682 176 0 57 chr12 121605592 121605910 -22676579 + AluJo SINE Alu 1 300 -12 618 200 27 0 chr12 121606674 121606784 -22675705 + FLAM_C SINE Alu 2 114 -19 266 324 66 37 chr12 121606895 121607136 -22675353 - L1MC5 LINE L1 -286 7675 7428 2090 128 0 3 chr12 121608359 121608672 -22673817 + AluSx SINE Alu 1 312 0 647 126 0 21 chr12 121608682 121608777 -22673712 + HY4 scRNA scRNA 1 93 0 2037 135 3 3 chr12 121608935 121609247 -22673242 - AluJb SINE Alu 0 312 1 285 292 151 9 chr12 121609312 121609477 -22673012 - MIR SINE MIR -61 201 19 2033 114 4 0 chr12 121610608 121610915 -22671574 - AluSx SINE Alu 0 308 1 923 226 23 5 chr12 121610948 121611165 -22671324 + MIR SINE MIR 8 228 -34 2094 71 4 7 chr12 121611250 121611530 -22670959 - AluY SINE Alu -32 279 1 433 131 283 0 chr12 121611530 121611629 -22670860 - AluJo SINE Alu -171 141 15 238 276 23 0 chr12 121611841 121611928 -22670561 + (CGG)n Simple_repeat Simple_repeat 2 90 0 522 187 67 22 chr12 121612435 121612569 -22669920 + MIR3 SINE MIR 17 156 -52 318 210 250 16 chr12 121612602 121612728 -22669761 + MIR SINE MIR 5 160 -48 866 188 67 19 chr12 121612728 121612936 -22669553 - MER20 DNA MER1_type -1 218 1 949 124 86 65 chr12 121612984 121613170 -22669319 - MER30B DNA MER1_type 0 190 1 307 171 13 40 chr12 121613272 121613348 -22669141 + L1MC5 LINE L1 7834 7907 -54 1879 110 23 13 chr12 121613882 121614190 -22668299 - AluSx SINE Alu -1 311 1 613 279 50 50 chr12 121614489 121614747 -22667742 + MIR SINE MIR 5 262 0 2371 42 3 0 chr12 121614757 121615041 -22667448 - AluY SINE Alu -26 285 1 1950 125 7 0 chr12 121615100 121615395 -22667094 - AluSx SINE Alu -15 297 1 1674 195 0 13 chr12 121615395 121615703 -22666786 - AluJo SINE Alu -8 304 1 837 141 87 43 chr12 121615877 121615893 -22666596 - AluJo SINE Alu -1 311 297 2025 105 26 3 chr12 121615893 121616198 -22666291 - AluSx SINE Alu 0 312 1 837 141 87 43 chr12 121616198 121616365 -22666124 - AluJo SINE Alu -15 297 120 23 0 0 0 chr12 121616377 121616400 -22666089 + AT_rich Low_complexity Low_complexity 1 23 0 789 172 8 15 chr12 121616430 121616564 -22665925 - AluJo SINE Alu -169 133 1 588 142 80 0 chr12 121616612 121616631 -22665858 - L1MB7 LINE L1 -19 6165 6149 1825 150 17 3 chr12 121616631 121616925 -22665564 - AluSx SINE Alu -14 298 1 588 142 80 0 chr12 121616925 121617018 -22665471 - L1MB7 LINE L1 -35 6149 6044 25 31 0 0 chr12 121617028 121617060 -22665429 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 121617885 121617906 -22664583 + AT_rich Low_complexity Low_complexity 1 21 0 615 215 7 9 chr12 121618458 121618597 -22663892 - MIR SINE MIR -68 140 15 1860 125 17 27 chr12 121618669 121618966 -22663523 + AluJo SINE Alu 1 294 -18 571 171 116 0 chr12 121618987 121619116 -22663373 - MIR SINE MIR -56 206 63 231 376 52 40 chr12 121619764 121619845 -22662644 + L2 LINE L2 2598 2677 -637 2100 96 7 10 chr12 121619845 121620136 -22662353 - AluSx SINE Alu -22 290 1 231 376 52 40 chr12 121620136 121620304 -22662185 + L2 LINE L2 2677 2850 -464 1194 129 48 5 chr12 121620626 121620812 -22661677 - AluSx SINE Alu -5 305 112 812 199 66 11 chr12 121620812 121620993 -22661496 - MLT1B LTR MaLR -135 255 65 760 151 0 0 chr12 121620993 121621099 -22661390 - AluSx SINE Alu -205 107 2 2093 161 35 5 chr12 121621538 121621910 -22660579 - MLT1B LTR MaLR -7 383 1 306 336 18 9 chr12 121622971 121623084 -22659405 + MIR SINE MIR 92 205 -57 481 301 75 22 chr12 121624040 121624266 -22658223 - MIR SINE MIR -16 246 9 475 342 16 5 chr12 121625072 121625262 -22657227 - Charlie8 DNA MER1_type -2164 253 62 330 165 41 62 chr12 121626621 121626718 -22655771 + MER102b DNA MER1_type 247 341 0 556 135 39 39 chr12 121626877 121626981 -22655508 + AluSg/x SINE Alu 199 302 -8 757 284 41 21 chr12 121627055 121627298 -22655191 + MIR SINE MIR 14 261 -1 2130 113 0 7 chr12 121627701 121628003 -22654486 - AluSx SINE Alu -12 300 1 454 114 0 29 chr12 121629030 121629100 -22653389 - AluS SINE Alu -249 69 2 1761 152 7 10 chr12 121629356 121629645 -22652844 + AluJo SINE Alu 1 288 -24 2066 108 13 13 chr12 121631474 121631779 -22650710 - AluSq SINE Alu -8 305 1 387 60 0 0 chr12 121632488 121632538 -22649951 + (TG)n Simple_repeat Simple_repeat 1 50 0 219 293 52 0 chr12 121632578 121632636 -22649853 + L2 LINE L2 3251 3311 -2 636 296 10 20 chr12 121633133 121633336 -22649153 + MIR SINE MIR 60 260 -2 324 286 77 0 chr12 121633667 121633758 -22648731 + L2 LINE L2 3201 3298 -15 2123 125 0 0 chr12 121633816 121634111 -22648378 + AluSx SINE Alu 1 295 -17 2096 113 3 3 chr12 121634212 121634513 -22647976 + AluSq SINE Alu 13 313 0 1980 134 0 16 chr12 121635710 121636024 -22646465 + AluJb SINE Alu 1 309 -3 1960 126 6 35 chr12 121636152 121636470 -22646019 - AluSx SINE Alu -3 309 1 568 275 24 48 chr12 121637069 121637276 -22645213 - MIR SINE MIR 0 262 61 190 239 0 0 chr12 121637437 121637483 -22645006 + MER5C DNA MER1_type 205 250 -74 562 301 35 10 chr12 121637560 121637759 -22644730 - MIR3 SINE MIR -3 205 2 567 290 149 34 chr12 121638166 121638857 -22643632 + L2 LINE L2 2555 3312 -1 2541 31 0 19 chr12 121641509 121641826 -22640663 - AluY SINE Alu 0 311 1 566 140 228 0 chr12 121641826 121641940 -22640549 - AluJo SINE Alu -171 141 2 261 172 0 17 chr12 121642289 121642347 -22640142 + (CTGGGG)n Simple_repeat Simple_repeat 1 57 0 1654 166 0 30 chr12 121642817 121643112 -22639377 - AluJb SINE Alu -4 308 23 1992 134 13 0 chr12 121643131 121643429 -22639060 - AluSx SINE Alu -10 302 1 423 279 66 25 chr12 121643434 121643631 -22638858 - L1MC5 LINE L1 -36 7925 7721 1329 193 7 59 chr12 121643964 121644269 -22638220 - AluJo SINE Alu -21 291 3 643 260 73 5 chr12 121644287 121644479 -22638010 - MIR SINE MIR 0 262 58 206 255 0 0 chr12 121644619 121644666 -22637823 - MIR SINE MIR -196 66 20 309 184 0 0 chr12 121645085 121645134 -22637355 - FLAM SINE Alu -9 124 76 471 158 0 0 chr12 121645134 121645210 -22637279 + AluJ/FRAM SINE Alu 231 306 -6 1231 196 71 0 chr12 121645248 121645503 -22636986 + Tigger5 DNA MER2_type 2051 2323 0 890 219 57 31 chr12 121645591 121645714 -22636775 - L1MB3 LINE L1 -2 6181 6063 1964 115 14 7 chr12 121645714 121646010 -22636479 - AluSx SINE Alu -14 298 1 890 219 57 31 chr12 121646010 121646141 -22636348 - L1MB3 LINE L1 -120 6063 5906 507 332 64 48 chr12 121646353 121646502 -22635987 - L1ME4a LINE L1 -158 5963 5818 963 216 40 50 chr12 121646502 121646697 -22635792 - MER58A DNA MER1_type -2199 221 27 1540 187 11 0 chr12 121646697 121646970 -22635519 - AluJo SINE Alu -36 276 1 963 216 40 50 chr12 121646970 121646996 -22635493 - MER58A DNA MER1_type -2393 27 2 507 332 64 48 chr12 121646996 121647141 -22635348 - L1ME4a LINE L1 -303 5818 5664 637 150 16 71 chr12 121647667 121647685 -22634804 - AluJo/FRAM SINE Alu -12 300 283 2086 105 20 13 chr12 121647685 121647989 -22634500 - AluSx SINE Alu -6 306 1 637 150 16 71 chr12 121647989 121648097 -22634392 - AluJo/FRAM SINE Alu -29 283 193 263 291 82 22 chr12 121648169 121648303 -22634186 + MER102b DNA MER1_type 197 338 -3 2242 97 3 0 chr12 121648381 121648680 -22633809 - AluSq SINE Alu -13 300 1 263 345 128 0 chr12 121648800 121648948 -22633541 - MIR SINE MIR -46 216 50 373 265 60 0 chr12 121649685 121649802 -22632687 + MIR SINE MIR 20 143 -119 271 221 47 47 chr12 121649822 121649894 -22632595 + L1MC5 LINE L1 7816 7890 -71 1831 164 10 3 chr12 121649894 121650232 -22632257 - AluJo SINE Alu 0 312 1 271 221 47 47 chr12 121650232 121650245 -22632244 + L1MC5 LINE L1 7889 7901 -60 273 205 77 0 chr12 121650288 121650366 -22632123 + MIR SINE MIR 155 238 -24 338 316 99 1 chr12 121650418 121650566 -22631923 + MIR SINE MIR 8 169 -39 1817 158 6 19 chr12 121650592 121650908 -22631581 - AluJb SINE Alu 0 312 1 339 244 107 8 chr12 121650979 121651110 -22631379 - MER58A DNA MER1_type 0 144 1 186 293 85 12 chr12 121651722 121651804 -22630685 - MIR SINE MIR -85 123 36 353 289 39 0 chr12 121652170 121652274 -22630215 + MIR SINE MIR 8 115 -147 2026 128 17 3 chr12 121652276 121652573 -22629916 - AluJb SINE Alu -11 301 1 2202 122 0 0 chr12 121652587 121652890 -22629599 - AluSx SINE Alu -9 303 1 223 241 0 0 chr12 121653201 121653255 -22629234 + GA-rich Low_complexity Low_complexity 3 56 0 281 326 11 0 chr12 121653456 121653548 -22628941 - MER46C DNA MER2_type -94 244 152 196 255 112 61 chr12 121653857 121653955 -22628534 - MIR SINE MIR -125 137 35 180 243 0 0 chr12 121655155 121655192 -22627297 - L2 LINE L2 -12 3301 3265 * 187 280 200 0 chr12 121655159 121655234 -22627255 - MIR SINE MIR -10 252 163 218 28 0 56 chr12 121655504 121655540 -22626949 + (CGGGGG)n Simple_repeat Simple_repeat 2 35 0 305 200 114 0 chr12 121656425 121656495 -22625994 + MER116 DNA Mariner 3 80 0 193 308 48 19 chr12 121656834 121656938 -22625551 - MIR SINE MIR -63 145 79 253 294 0 47 chr12 121657551 121657636 -22624853 + MIR SINE MIR 51 131 -77 607 239 126 39 chr12 121657806 121658036 -22624453 - MIR SINE MIR 0 262 13 211 254 34 0 chr12 121658486 121658545 -22623944 - L2 LINE L2 -10 3262 3202 207 233 0 0 chr12 121658624 121658667 -22623822 - L2 LINE L2 -244 3028 2986 360 205 26 43 chr12 121660208 121660325 -22622164 + MER113 DNA MER1_type? 135 249 -272 464 143 33 11 chr12 121660453 121660544 -22621945 + HY3 scRNA scRNA 3 95 -6 307 91 0 0 chr12 121660774 121660818 -22621671 - LTR2B LTR ERV1 0 490 447 350 319 80 35 chr12 121710921 121711147 -22571342 - L1ME LINE L1 -304 5817 5582 2286 110 0 0 chr12 121711150 121711458 -22571031 + AluSx SINE Alu 1 308 -4 485 103 0 13 chr12 121711489 121711567 -22570922 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 253 154 0 46 chr12 121711566 121711631 -22570858 + T-rich Low_complexity Low_complexity 3 64 0 * 771 161 8 15 chr12 121711644 121711774 -22570715 - FLAM_C SINE Alu 0 133 5 367 283 19 44 chr12 121711876 121712035 -22570454 + L3 LINE CR1 1412 1566 -11 473 287 82 20 chr12 121712234 121712429 -22570060 + MIR SINE MIR 12 218 -44 1932 151 3 0 chr12 121712456 121712755 -22569734 + AluSx SINE Alu 1 300 -12 1666 161 11 4 chr12 121712974 121713248 -22569241 - AluJo SINE Alu -36 276 1 959 269 84 78 chr12 121713250 121713670 -22568819 + MLT1G LTR MaLR 32 435 -155 2189 123 0 0 chr12 121713670 121713980 -22568509 - AluSq SINE Alu -3 310 1 959 269 84 78 chr12 121713980 121714137 -22568352 + MLT1G LTR MaLR 435 590 0 739 157 0 0 chr12 121714156 121714271 -22568218 - FRAM SINE Alu -3 173 59 205 100 0 60 chr12 121714328 121714359 -22568130 + (TAA)n Simple_repeat Simple_repeat 1 29 -18 2449 57 0 0 chr12 121714359 121714655 -22567834 + AluY SINE Alu 1 296 -15 205 100 0 60 chr12 121714655 121714673 -22567816 + (TAA)n Simple_repeat Simple_repeat 29 47 0 814 109 8 17 chr12 121714762 121714881 -22567608 - FLAM_C SINE Alu -24 119 2 647 243 37 48 chr12 121714883 121715072 -22567417 - MIR SINE MIR -59 203 17 1985 139 10 0 chr12 121715630 121715931 -22566558 - AluSx SINE Alu -8 304 1 1848 153 0 3 chr12 121716031 121716332 -22566157 + AluJo SINE Alu 1 300 -12 321 253 10 40 chr12 121716339 121716438 -22566051 - MIR SINE MIR -86 176 81 328 293 85 28 chr12 121716569 121716781 -22565708 - L2 LINE L2 -223 3049 2826 372 57 57 0 chr12 121717156 121717209 -22565280 + U6 snRNA snRNA 1 56 -51 23 54 0 0 chr12 121717221 121717258 -22565231 + AT_rich Low_complexity Low_complexity 1 37 0 828 134 0 37 chr12 121717261 121717297 -22565192 + FLAM_C SINE Alu 5 41 -271 4494 75 2 5 chr12 121717297 121717853 -22564636 - MER41A LTR ERV1 0 554 1 828 134 0 37 chr12 121717853 121717950 -22564539 + FLAM_C SINE Alu 41 133 -179 1520 189 10 16 chr12 121717953 121718265 -22564224 + AluJb SINE Alu 1 310 -2 249 220 0 60 chr12 121718592 121718692 -22563797 + (CGGGG)n Simple_repeat Simple_repeat 5 98 0 475 206 10 0 chr12 121719176 121719278 -22563211 - MIR SINE MIR -113 149 47 191 269 0 0 chr12 121719763 121719815 -22562674 + MIR SINE MIR 63 114 -148 2225 115 0 0 chr12 121719815 121720120 -22562369 + AluSx SINE Alu 2 306 -6 424 184 48 19 chr12 121720241 121720344 -22562145 + MIR SINE MIR 103 208 -54 1543 260 36 34 chr12 121721141 121721292 -22561197 - L2 LINE L2 -1 3312 3163 1527 161 27 0 chr12 121721292 121721552 -22560937 + AluSx SINE Alu 35 301 -11 1543 260 36 34 chr12 121721552 121721985 -22560504 - L2 LINE L2 -150 3163 2727 2190 81 5 158 chr12 121721996 121722414 -22560075 - MLT2A2 LTR ERVL 0 453 100 1594 109 13 8 chr12 121722414 121722652 -22559837 - AluSg/x SINE Alu -7 303 65 337 252 19 0 chr12 121722668 121722771 -22559718 - L2 LINE L2 -829 2485 2381 312 312 115 6 chr12 121723283 121723440 -22559049 - MIR SINE MIR -77 185 12 829 239 245 12 chr12 121723558 121724047 -22558442 - L2 LINE L2 -2 3311 2694 519 250 47 6 chr12 121724512 121724692 -22557797 + MIR SINE MIR 40 230 -32 2004 103 0 33 chr12 121724774 121725076 -22557413 + AluJb SINE Alu 3 294 -18 1800 152 35 3 chr12 121725110 121725400 -22557089 + AluSx SINE Alu 3 301 -11 274 250 45 11 chr12 121725401 121725489 -22557000 - L1MC4a LINE L1 -1651 6157 6067 246 145 48 72 chr12 121725559 121725642 -22556847 - L1MC4a LINE L1 -1876 5932 5852 744 199 13 25 chr12 121725779 121726101 -22556388 + (TCCA)n Simple_repeat Simple_repeat 1 317 0 2121 125 3 0 chr12 121726208 121726513 -22555976 + AluSx SINE Alu 1 306 -6 304 304 71 49 chr12 121726520 121726744 -22555745 - L2 LINE L2 -192 3080 2852 1649 151 14 0 chr12 121726930 121727240 -22555249 + AluJb SINE Alu 1 314 0 2119 98 14 3 chr12 121727263 121727560 -22554929 - AluSq SINE Alu -13 300 1 1688 123 112 0 chr12 121727562 121727831 -22554658 - AluSx SINE Alu -13 299 1 327 255 118 0 chr12 121727868 121727970 -22554519 - MIR SINE MIR -108 154 41 849 201 23 11 chr12 121728420 121728594 -22553895 + FRAM SINE Alu 1 176 0 1993 148 3 0 chr12 121728594 121728905 -22553584 + AluSx SINE Alu 1 312 0 1392 224 46 7 chr12 121728927 121729231 -22553258 - MER58B DNA MER1_type -25 316 1 2411 54 3 0 chr12 121729398 121729695 -22552794 + AluY SINE Alu 1 298 -13 1739 140 10 27 chr12 121729699 121729999 -22552490 + AluJo SINE Alu 1 295 -17 335 278 111 0 chr12 121730130 121730256 -22552233 - MIR SINE MIR -59 203 64 2026 146 0 0 chr12 121730257 121730552 -22551937 + AluSx SINE Alu 1 295 -17 2196 118 0 0 chr12 121730554 121730858 -22551631 + AluSx SINE Alu 1 304 -8 1923 144 7 3 chr12 121730921 121731219 -22551270 - AluJo SINE Alu -1 311 13 2207 115 0 0 chr12 121731529 121731834 -22550655 - AluSx SINE Alu -7 305 1 566 234 42 37 chr12 121732102 121732281 -22550208 + LTR16C LTR ERVL 146 385 -106 1873 166 0 10 chr12 121732281 121732594 -22549895 - AluJo SINE Alu 0 312 3 566 234 42 37 chr12 121732594 121732702 -22549787 + LTR16C LTR ERVL 385 491 0 404 292 29 74 chr12 121732912 121733068 -22549421 + MIR SINE MIR 21 164 -98 1587 156 64 21 chr12 121733068 121733350 -22549139 - AluJo SINE Alu -18 294 1 404 292 29 74 chr12 121733350 121733436 -22549053 + MIR SINE MIR 164 252 -10 26 0 0 0 chr12 121733456 121733482 -22549007 + AT_rich Low_complexity Low_complexity 1 26 0 453 229 9 18 chr12 121735020 121735129 -22547360 - MLT1K LTR MaLR -4 584 477 1830 158 0 10 chr12 121735168 121735465 -22547024 + AluJo SINE Alu 1 294 -18 507 268 201 38 chr12 121735523 121735915 -22546574 - LTR33 LTR ERVL -11 510 55 506 231 22 0 chr12 121736661 121736893 -22545596 + (CA)n Simple_repeat Simple_repeat 1 237 0 278 243 17 28 chr12 121736913 121737090 -22545399 + (CATA)n Simple_repeat Simple_repeat 4 178 0 240 262 36 0 chr12 121737114 121737282 -22545207 + (CA)n Simple_repeat Simple_repeat 1 174 0 415 214 24 6 chr12 121737381 121737549 -22544940 + (CA)n Simple_repeat Simple_repeat 1 171 0 1441 144 69 29 chr12 121737872 121738149 -22544340 + AluJo SINE Alu 1 288 -24 1565 185 180 28 chr12 121738926 121739019 -22543470 + MLT1D LTR MaLR 15 93 -412 2460 50 0 7 chr12 121739019 121739318 -22543171 - AluY SINE Alu -14 297 1 1565 185 180 28 chr12 121739318 121739646 -22542843 + MLT1D LTR MaLR 93 500 -5 1799 137 11 14 chr12 121739979 121740257 -22542232 - AluSx SINE Alu -35 277 1 612 206 137 50 chr12 121740473 121740692 -22541797 + MER102b DNA MER1_type 94 331 -10 1123 137 11 0 chr12 121741213 121741411 -22541078 - AluSg/x SINE Alu 0 322 123 610 224 133 64 chr12 121741429 121741504 -22540985 + MER113 DNA MER1_type? 2 70 -451 2052 124 7 3 chr12 121741504 121741803 -22540686 - AluSx SINE Alu -12 300 1 381 224 265 0 chr12 121741813 121741911 -22540578 - FLAM_A SINE Alu -9 124 1 610 224 133 64 chr12 121741911 121742065 -22540424 + MER113 DNA MER1_type? 78 220 -301 2052 134 0 0 chr12 121742065 121742364 -22540125 + AluSx SINE Alu 11 309 -3 610 224 133 64 chr12 121742364 121742514 -22539975 + MER113 DNA MER1_type? 220 420 -101 1749 126 0 0 chr12 121742863 121743109 -22539380 - AluSx SINE Alu -66 246 1 1122 157 0 0 chr12 121743393 121743559 -22538930 + FRAM SINE Alu 1 166 0 1877 141 0 17 chr12 121743629 121743790 -22538699 - AluJb SINE Alu -19 293 138 2152 113 3 0 chr12 121743790 121744092 -22538397 - AluSx SINE Alu -9 303 1 1877 141 0 17 chr12 121744092 121744228 -22538261 - AluJb SINE Alu -174 138 1 232 252 189 24 chr12 121744523 121744650 -22537839 + MER117 DNA MER1_type 19 166 -31 1848 113 4 4 chr12 121745188 121745444 -22537045 - AluSx SINE Alu -53 259 4 483 345 41 8 chr12 121745533 121745779 -22536710 - MIR SINE MIR -1 261 8 965 145 0 0 chr12 121745857 121746009 -22536480 - AluJ SINE Alu 0 312 161 815 108 0 0 chr12 121746009 121746120 -22536369 - AluJ SINE Alu -201 111 1 591 155 10 0 chr12 121746127 121746224 -22536265 - FLAM_A SINE Alu -17 125 28 1225 115 0 0 chr12 121747712 121747894 -22534595 - AluSg/x SINE Alu -2 310 129 2058 117 3 24 chr12 121750238 121750528 -22531961 + AluSx SINE Alu 1 284 -28 196 42 0 0 chr12 121750528 121750552 -22531937 + (GAAAA)n Simple_repeat Simple_repeat 2 170 0 1832 144 8 69 chr12 121750565 121750790 -22531699 - MLT1A1 LTR MaLR 0 365 128 185 30 61 0 chr12 121750790 121750823 -22531666 + T-rich Low_complexity Low_complexity 131 180 0 2215 97 0 0 chr12 121750823 121751102 -22531387 - AluSg SINE Alu -31 279 1 1832 144 8 69 chr12 121751102 121751264 -22531225 - MLT1A1 LTR MaLR -235 130 1 1458 170 3 64 chr12 121751300 121751612 -22530877 + AluJo SINE Alu 2 294 -18 345 298 101 8 chr12 121751820 121752011 -22530478 - L1ME3A LINE L1 -216 5948 5743 507 278 157 5 chr12 121752657 121752873 -22529616 + Charlie8 DNA MER1_type 29 277 -2140 1826 147 8 48 chr12 121754291 121754495 -22527994 + MER2 DNA MER2_type 1 187 -157 2199 118 17 0 chr12 121754495 121754784 -22527705 + AluSx SINE Alu 1 294 -18 1826 147 8 48 chr12 121754784 121754934 -22527555 + MER2 DNA MER2_type 187 341 -3 494 251 126 35 chr12 121754950 121755202 -22527287 - MIR SINE MIR -1 261 1 2335 86 0 20 chr12 121755567 121755868 -22526621 - AluSx SINE Alu -17 295 1 2293 74 20 14 chr12 121755897 121756194 -22526295 - AluY SINE Alu -12 299 1 1003 243 9 0 chr12 121756304 121756526 -22525963 + MER58A DNA MER1_type 1 224 0 280 323 140 0 chr12 121758786 121758950 -22523539 + MIR SINE MIR 70 256 -6 203 162 0 0 chr12 121759254 121759291 -22523198 + (TG)n Simple_repeat Simple_repeat 1 37 0 315 223 180 7 chr12 121759413 121759552 -22522937 - L1ME4a LINE L1 0 6121 5959 282 116 0 0 chr12 121759620 121759663 -22522826 + (TG)n Simple_repeat Simple_repeat 2 44 0 230 151 0 0 chr12 121759670 121759723 -22522766 + LTR66 LTR ERVL 395 447 -163 1719 118 4 0 chr12 121759837 121760065 -22522424 + AluSg/x SINE Alu 70 298 -12 554 211 138 127 chr12 121760068 121760429 -22522060 + MLT1H LTR MaLR 177 541 -8 1874 173 0 19 chr12 121760467 121760779 -22521710 + AluJb SINE Alu 1 306 -6 473 276 1 38 chr12 121761166 121761330 -22521159 - MIR3 SINE MIR -63 145 5 824 214 7 0 chr12 121761951 121762363 -22520126 + (TGGA)n Simple_repeat Simple_repeat 1 415 0 269 247 86 43 chr12 121763550 121763643 -22518846 - L2 LINE L2 -2 3311 3215 235 255 0 0 chr12 121763721 121763772 -22518717 + MLT1H LTR MaLR 248 298 -251 245 235 15 0 chr12 121763865 121763933 -22518556 + L2 LINE L2 2990 3058 -214 * 277 325 50 0 chr12 121763929 121764046 -22518443 - L2 LINE L2 -9 3263 3141 273 371 32 14 chr12 121764046 121764267 -22518222 + MIR SINE MIR 2 226 -36 857 169 6 25 chr12 121764830 121764990 -22517499 - FRAM SINE Alu 0 40 1 2242 129 0 3 chr12 121765151 121765454 -22517035 + AluSx SINE Alu 11 312 0 2236 167 14 23 chr12 121765666 121765719 -22516770 - L1MB7 LINE L1 -18 6166 6114 2336 108 0 0 chr12 121765719 121766014 -22516475 + AluSx SINE Alu 1 295 -17 2236 167 14 23 chr12 121766014 121766402 -22516087 - L1MB7 LINE L1 -70 6114 5729 368 329 19 34 chr12 121766863 121767070 -22515419 - L1MB7 LINE L1 -2074 5734 5531 371 235 26 98 chr12 121767082 121767235 -22515254 - MIR SINE MIR -9 253 112 625 230 65 73 chr12 121767248 121767509 -22514980 + MLT1H LTR MaLR 36 294 -255 245 253 84 0 chr12 121767563 121767646 -22514843 + MLT1H LTR MaLR 459 548 -1 195 196 137 0 chr12 121767662 121767713 -22514776 - MIR SINE MIR -170 92 35 2025 125 7 0 chr12 121767818 121768099 -22514390 - AluSx SINE Alu -9 303 21 2082 139 7 3 chr12 121768146 121768449 -22514040 - AluJb SINE Alu -6 306 3 248 286 0 0 chr12 121768451 121768507 -22513982 - MER5A DNA MER1_type -118 71 16 229 274 147 16 chr12 121768544 121768734 -22513755 - L1MB7 LINE L1 -2290 5518 5304 1686 150 54 4 chr12 121768816 121769096 -22513393 + AluSg SINE Alu 3 296 -14 220 169 17 17 chr12 121769096 121769155 -22513334 + G-rich Low_complexity Low_complexity 1 59 0 1671 184 21 3 chr12 121769158 121769446 -22513043 + AluJo SINE Alu 11 303 -9 227 326 0 11 chr12 121770049 121770138 -22512351 - L2 LINE L2 -217 3055 2968 509 207 16 135 chr12 121770250 121770306 -22512183 - MIR SINE MIR -36 226 165 2045 111 38 3 chr12 121770306 121770594 -22511895 + AluSx SINE Alu 1 298 -14 509 207 16 135 chr12 121770594 121770730 -22511759 - MIR SINE MIR -97 165 57 459 310 19 6 chr12 121770934 121771092 -22511397 + MIR SINE MIR 20 179 -83 1668 138 59 35 chr12 121771163 121771452 -22511037 + AluJo SINE Alu 6 301 -11 1741 151 8 0 chr12 121772050 121772309 -22510180 + AluJo SINE Alu 1 261 -51 522 150 0 0 chr12 121772334 121772414 -22510075 + FLAM SINE Alu 42 121 -22 202 273 91 34 chr12 121772784 121772872 -22509617 - L2 LINE L2 -521 2793 2701 678 283 5 22 chr12 121774092 121774276 -22508213 + MIR SINE MIR 35 215 -47 293 268 0 0 chr12 121774295 121774366 -22508123 + MIR SINE MIR 145 215 -47 1522 283 120 8 chr12 121774369 121774903 -22507586 - MLT1G1 LTR MaLR -1 594 1 443 250 19 0 chr12 121775009 121775117 -22507372 + MIR SINE MIR 3 112 -150 4714 218 48 13 chr12 121775121 121775601 -22506888 + L1ME1 LINE L1 3400 3862 -2284 1312 140 35 4 chr12 121775601 121775830 -22506659 - MER46A DNA MER2_type 0 236 1 4714 218 48 13 chr12 121775830 121776546 -22505943 + L1ME1 LINE L1 3862 4637 -1509 2102 117 3 17 chr12 121776561 121776859 -22505630 - AluSx SINE Alu -18 294 1 1658 189 11 3 chr12 121776861 121777146 -22505343 - AluJo SINE Alu -19 293 7 272 167 61 30 chr12 121777171 121777224 -22505265 - AluJo SINE Alu -167 135 78 180 0 0 0 chr12 121777224 121777244 -22505245 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 272 167 61 30 chr12 121777244 121777256 -22505233 - AluJo SINE Alu -224 78 68 277 149 0 0 chr12 121777320 121777367 -22505122 - FLAM_A SINE Alu -3 130 84 672 191 45 13 chr12 121777418 121777575 -22504914 + L1ME1 LINE L1 4623 4784 -1362 842 203 136 54 chr12 121777579 121777821 -22504668 - AluJo SINE Alu -7 305 44 2358 191 112 65 chr12 121777827 121778239 -22504250 + L1ME1 LINE L1 5058 5449 -717 2195 105 17 7 chr12 121778239 121778533 -22503956 + AluSx SINE Alu 1 297 -15 2358 191 112 65 chr12 121778533 121779156 -22503333 + L1ME1 LINE L1 5449 6122 -44 347 275 76 0 chr12 121779072 121779203 -22503286 + L1MA10 LINE L1 6194 6334 0 * 2192 141 3 0 chr12 121779214 121779520 -22502969 + AluSx SINE Alu 1 307 -5 1884 176 3 7 chr12 121779529 121779819 -22502670 + AluJo SINE Alu 1 289 -23 2262 108 7 0 chr12 121780009 121780306 -22502183 - AluSx SINE Alu -13 299 1 511 293 237 21 chr12 121780454 121780792 -22501697 - MLT1K LTR MaLR -29 559 149 543 242 21 16 chr12 121781018 121781204 -22501285 - L1MC4a LINE L1 -1755 6053 5867 23 33 0 0 chr12 121781910 121781940 -22500549 + AT_rich Low_complexity Low_complexity 1 30 0 2110 107 35 3 chr12 121781940 121782229 -22500260 + AluSx SINE Alu 1 298 -14 244 232 274 21 chr12 121782236 121782426 -22500063 - L1ME4a LINE L1 -5 6116 5879 2366 95 6 19 chr12 121782442 121782758 -22499731 - AluSx SINE Alu 0 312 1 1202 194 14 0 chr12 121783244 121783455 -22499034 + AluJb SINE Alu 87 300 -12 497 279 64 12 chr12 121783790 121783962 -22498527 - MIR SINE MIR -76 186 6 351 310 108 60 chr12 121784019 121784251 -22498238 + L1ME4a LINE L1 5878 6120 -1 1984 150 11 0 chr12 121784301 121784588 -22497901 - AluSx SINE Alu -22 290 1 2454 96 0 0 chr12 121785424 121785726 -22496763 + AluSx SINE Alu 1 302 -10 325 100 86 0 chr12 121785730 121785800 -22496689 + L1MA7 LINE L1 6210 6285 -6 781 243 31 62 chr12 121785984 121786062 -22496427 + L1ME3A LINE L1 5898 5977 -193 1802 143 8 0 chr12 121786062 121786321 -22496168 + AluSx SINE Alu 50 310 -2 781 243 31 62 chr12 121786321 121786501 -22495988 + L1ME3A LINE L1 5977 6148 -22 325 322 45 28 chr12 121786468 121786773 -22495716 - L1ME4a LINE L1 -489 5632 5492 * 934 229 0 0 chr12 121786904 121787079 -22495410 - AluJb SINE Alu -15 297 123 660 238 20 0 chr12 121787114 121787265 -22495224 + MLT1H LTR MaLR 8 161 -388 2365 110 0 0 chr12 121787272 121787572 -22494917 + AluSx SINE Alu 1 300 -12 2280 95 13 13 chr12 121787582 121787887 -22494602 + AluSx SINE Alu 1 305 -7 2206 123 7 0 chr12 121788852 121789153 -22493336 + AluSx SINE Alu 1 303 -9 772 162 0 22 chr12 121789164 121789300 -22493189 + FLAM_C SINE Alu 1 133 0 392 253 0 35 chr12 121789369 121789392 -22493097 + MIR SINE MIR 2 24 -184 2127 156 63 23 chr12 121789392 121789676 -22492813 + MER65C LTR ERV1 1 311 -150 1847 167 3 14 chr12 121789676 121789969 -22492520 - AluJo SINE Alu -22 290 1 2127 156 63 23 chr12 121789969 121790127 -22492362 + MER65C LTR ERV1 311 461 0 392 253 0 35 chr12 121790127 121790229 -22492260 + MIR SINE MIR 24 121 -87 2035 122 58 22 chr12 121790465 121790827 -22491662 - THE1C LTR MaLR 0 375 1 371 263 155 43 chr12 121791038 121791238 -22491251 - MIR SINE MIR 0 262 31 2310 101 10 0 chr12 121791238 121791534 -22490955 - AluSx SINE Alu -13 299 1 371 263 155 43 chr12 121791534 121791565 -22490924 - MIR SINE MIR -231 31 5 1252 138 144 57 chr12 121791607 121791664 -22490825 - MER4B LTR ERV1 -246 364 313 1619 162 62 10 chr12 121791664 121791954 -22490535 + AluSx SINE Alu 1 305 -7 1252 138 144 57 chr12 121791954 121792224 -22490265 - MER4B LTR ERV1 -293 317 7 2214 131 3 0 chr12 121792224 121792530 -22489959 + AluSx SINE Alu 1 307 -5 1357 230 30 15 chr12 121792546 121792589 -22489900 - MLT1A1 LTR MaLR -26 339 298 2457 86 3 6 chr12 121792589 121792902 -22489587 + AluSp SINE Alu 1 312 -1 1357 230 30 15 chr12 121792902 121793188 -22489301 - MLT1A1 LTR MaLR -67 298 5 1495 184 11 0 chr12 121793273 121793534 -22488955 - AluJb SINE Alu -48 264 1 297 250 68 0 chr12 121794244 121794332 -22488157 - L1MC5 LINE L1 -381 7580 7487 755 186 115 0 chr12 121794422 121794605 -22487884 - MER3 DNA MER1_type -4 205 2 588 147 52 15 chr12 121794630 121794766 -22487723 - L1MC5 LINE L1 -1208 6753 6613 2012 110 43 4 chr12 121794888 121795169 -22487320 - AluSx SINE Alu -20 292 1 1635 188 38 3 chr12 121795377 121795669 -22486820 - AluJb SINE Alu -10 302 1 1286 106 0 28 chr12 121795739 121795918 -22486571 - AluSq SINE Alu -6 307 134 2381 106 3 3 chr12 121795918 121796221 -22486268 - AluSx SINE Alu -9 303 1 837 104 8 0 chr12 121796545 121796670 -22485819 + FLAM_C SINE Alu 1 126 -7 1489 200 4 4 chr12 121796692 121796942 -22485547 - AluJb SINE Alu -60 252 3 193 313 47 23 chr12 121797133 121797261 -22485228 - MIR3 SINE MIR -73 135 5 1005 212 4 48 chr12 121797627 121797820 -22484669 + MER58A DNA MER1_type 1 184 -2236 2320 101 6 19 chr12 121797820 121798136 -22484353 + AluSx SINE Alu 1 312 0 1005 212 4 48 chr12 121798136 121798173 -22484316 + MER58A DNA MER1_type 184 221 -3 277 338 115 0 chr12 121798281 121798438 -22484051 - MIR SINE MIR 0 262 88 2517 99 0 0 chr12 121798870 121799182 -22483307 + AluSx SINE Alu 1 312 0 323 287 21 11 chr12 121799276 121799370 -22483119 - MER91A DNA MER1_type -97 99 5 452 204 102 36 chr12 121799939 121800076 -22482413 + MIR SINE MIR 117 262 0 2403 99 3 3 chr12 121800105 121800417 -22482072 + AluSx SINE Alu 1 312 0 910 232 18 0 chr12 121800512 121800732 -22481757 - L1MB8 LINE L1 -130 6048 5825 2297 99 0 3 chr12 121800904 121801196 -22481293 - AluSx SINE Alu -21 291 1 945 118 29 7 chr12 121801218 121801354 -22481135 - AluSg/x SINE Alu -16 294 156 720 174 29 29 chr12 121801492 121801630 -22480859 + AluSp/q SINE Alu 158 295 -18 783 272 31 24 chr12 121801632 121801653 -22480836 - L1MC4a LINE L1 -1967 5841 5822 1767 176 3 3 chr12 121801653 121801958 -22480531 - AluJo SINE Alu -7 305 16 783 272 31 24 chr12 121801958 121802190 -22480299 - L1MC4a LINE L1 -1986 5822 5586 183 408 53 18 chr12 121803091 121803319 -22479170 + L2 LINE L2 3078 3313 0 1839 155 0 16 chr12 121803356 121803660 -22478829 - AluJo SINE Alu -13 299 1 193 343 108 0 chr12 121807464 121807566 -22474923 - MER5A DNA MER1_type 0 189 77 230 253 21 21 chr12 121809995 121810090 -22472399 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 356 253 118 29 chr12 121810163 121810333 -22472156 - HAL1 LINE L1 -22 2485 2301 713 151 0 0 chr12 121810492 121810598 -22471891 + AluJb SINE Alu 194 299 -13 275 296 104 17 chr12 121811623 121811738 -22470751 - MER102b DNA MER1_type -8 333 209 1664 68 0 0 chr12 121811832 121812039 -22470450 - AluSg/x SINE Alu -21 291 85 1094 196 65 4 chr12 121812068 121812313 -22470176 - AluJo SINE Alu -10 302 43 2120 121 0 0 chr12 121812330 121812628 -22469861 + AluSx SINE Alu 1 298 -14 267 306 0 0 chr12 121812648 121812720 -22469769 - MER102b DNA MER1_type -221 120 49 311 218 126 23 chr12 121813177 121813264 -22469225 + MIR3 SINE MIR 105 200 -8 945 178 6 0 chr12 121813285 121813454 -22469035 + FRAM SINE Alu 4 173 -3 228 287 61 9 chr12 121817125 121817240 -22465249 + Charlie5 DNA MER1_type 2488 2608 -4 206 177 7 109 chr12 121818023 121818170 -22464319 + (CAA)n Simple_repeat Simple_repeat 1 132 0 1650 117 57 73 chr12 121818179 121818505 -22463984 + AluSx SINE Alu 1 321 0 2259 116 0 0 chr12 121818837 121819148 -22463341 + AluSx SINE Alu 1 311 -1 237 321 84 0 chr12 121819165 121819296 -22463193 + L1MC4 LINE L1 7900 8041 -1 2242 102 0 7 chr12 121819317 121819622 -22462867 - AluSq SINE Alu -10 303 1 568 248 92 5 chr12 121819652 121819852 -22462637 - MIR SINE MIR -10 252 37 977 275 114 29 chr12 121820052 121820477 -22462012 + MLT1C LTR MaLR 1 466 -1 183 80 0 0 chr12 121820984 121821009 -22461480 + (CA)n Simple_repeat Simple_repeat 2 26 0 291 140 0 70 chr12 121821037 121821137 -22461352 + (CA)n Simple_repeat Simple_repeat 2 94 0 482 236 18 0 chr12 121821877 121821987 -22460502 - FRAM SINE Alu -22 154 43 2233 84 0 16 chr12 121822211 121822519 -22459970 + AluSx SINE Alu 1 303 -9 23 33 0 0 chr12 121822643 121822673 -22459816 + GC_rich Low_complexity Low_complexity 1 30 0 300 110 110 0 chr12 121824640 121824713 -22457776 + MIR SINE MIR 53 133 -75 1725 138 4 0 chr12 121824768 121825036 -22457453 - AluSx SINE Alu 0 312 44 182 229 49 66 chr12 121825150 121825211 -22457278 - MIR SINE MIR -62 146 87 1884 158 0 22 chr12 121825451 121825768 -22456721 - AluJo SINE Alu 0 312 3 1627 139 82 14 chr12 121826187 121826467 -22456022 + AluJb SINE Alu 1 299 -13 2001 128 3 35 chr12 121826900 121827219 -22455270 - AluSx SINE Alu -3 309 1 1687 152 27 7 chr12 121827276 121827573 -22454916 + AluJo SINE Alu 1 303 -9 975 104 7 7 chr12 121828205 121828349 -22454140 + AluSg/x SINE Alu 159 302 -10 297 0 0 0 chr12 121828349 121828382 -22454107 + (CA)n Simple_repeat Simple_repeat 2 34 0 192 40 0 0 chr12 121828386 121828411 -22454078 + (CCA)n Simple_repeat Simple_repeat 1 25 0 1549 169 4 4 chr12 121828504 121828770 -22453719 + AluJb SINE Alu 30 295 -17 1476 221 47 42 chr12 121828772 121829096 -22453393 + Charlie4a DNA MER1_type 97 425 -1536 1856 171 0 3 chr12 121829096 121829406 -22453083 + AluJo SINE Alu 2 310 -2 1476 221 47 42 chr12 121829406 121829488 -22453001 + Charlie4a DNA MER1_type 425 505 -3 449 173 13 0 chr12 121830686 121830761 -22451728 - MER2 DNA MER2_type -1 344 269 2184 97 3 0 chr12 121830783 121831117 -22451372 + AluY SINE Alu 1 311 0 227 88 123 18 chr12 121831120 121831177 -22451312 - MER2 DNA MER2_type -134 211 149 461 248 75 0 chr12 121831727 121831860 -22450629 + MER117 DNA MER1_type 14 156 -41 221 288 12 12 chr12 121832428 121832508 -22449981 + GA-rich Low_complexity Low_complexity 2 81 0 404 87 0 244 chr12 121832653 121832719 -22449770 - FLAM SINE Alu -180 132 104 2329 99 0 0 chr12 121832719 121833031 -22449458 - AluSx SINE Alu 0 312 1 404 87 0 244 chr12 121833031 121833079 -22449410 - FLAM SINE Alu -208 104 46 232 271 0 14 chr12 121833215 121833285 -22449204 + L2 LINE L2 2981 3049 -223 482 293 83 24 chr12 121833381 121833586 -22448903 - MIR SINE MIR -45 217 1 1072 239 99 10 chr12 121833851 121834209 -22448280 + MLT1J LTR MaLR 70 507 -4 1972 122 44 0 chr12 121834221 121834517 -22447972 + AluSq SINE Alu 1 309 -4 358 270 81 0 chr12 121834536 121834647 -22447842 + L2 LINE L2 3151 3270 -2 791 146 13 21 chr12 121834696 121834916 -22447573 + CT-rich Low_complexity Low_complexity 1 218 0 263 135 0 0 chr12 121834916 121834953 -22447536 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 1044 108 0 7 chr12 121835081 121835229 -22447260 + FRAM SINE Alu 13 159 -17 271 273 0 26 chr12 121835229 121835306 -22447183 - LTR8 LTR ERV1 -561 130 56 267 243 100 0 chr12 121835349 121835419 -22447070 - LTR8 LTR ERV1 -613 78 2 281 241 0 0 chr12 121835526 121835584 -22446905 + MIR SINE MIR 73 130 -132 460 276 77 11 chr12 121836349 121836530 -22445959 + MIR SINE MIR 25 217 -45 2157 105 0 22 chr12 121836605 121836920 -22445569 + AluSx SINE Alu 1 308 -4 769 207 46 37 chr12 121836949 121837166 -22445323 - MIR SINE MIR -42 220 2 26 30 0 0 chr12 121837205 121837238 -22445251 + AT_rich Low_complexity Low_complexity 1 33 0 323 319 0 11 chr12 121837245 121837336 -22445153 + L1MC4 LINE L1 6614 6703 -1339 427 429 71 62 chr12 121837480 121838563 -22443926 - L1M4 LINE L1 -2695 3451 2359 393 377 96 49 chr12 121838182 121838993 -22443496 + L1MC5 LINE L1 6904 7752 -209 * 353 197 0 42 chr12 121838939 121838996 -22443493 - L1MC4 LINE L1 -1337 6705 6650 * 1981 116 18 3 chr12 121838996 121839281 -22443208 - AluSq SINE Alu -24 289 1 353 197 0 42 chr12 121839281 121839294 -22443195 - L1MC4 LINE L1 -1392 6650 6638 328 320 21 0 chr12 121839381 121839478 -22443011 - L1MC4 LINE L1 -1340 6702 6604 712 188 0 0 chr12 121839494 121839611 -22442878 + FLAM_C SINE Alu 2 118 -25 312 27 0 0 chr12 121839611 121839648 -22442841 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 234 330 72 57 chr12 121839754 121839963 -22442526 + L2 LINE L2 3030 3241 -31 278 289 33 4 chr12 121840107 121840228 -22442261 - MIR SINE MIR -63 145 53 * 522 339 155 31 chr12 121840218 121840726 -22441763 + L2 LINE L2 2702 3272 0 2050 119 3 0 chr12 121840863 121841156 -22441333 + AluSq SINE Alu 1 294 -19 307 275 0 0 chr12 121841303 121841383 -22441106 + MIR SINE MIR 66 145 -63 254 302 167 0 chr12 121842019 121842115 -22440374 - MIR SINE MIR -62 146 35 644 250 47 6 chr12 121842446 121842618 -22439871 + MIR SINE MIR 3 181 -81 1533 221 3 0 chr12 121842624 121842922 -22439567 + AluJo SINE Alu 11 309 -3 920 156 16 92 chr12 121843152 121843402 -22439087 - AluSp SINE Alu -4 309 79 937 122 0 14 chr12 121843522 121843670 -22438819 + AluJb SINE Alu 161 306 -6 260 258 67 0 chr12 121843677 121843797 -22438692 + L1MD2 LINE L1 5116 5243 -903 219 119 34 17 chr12 121843797 121843856 -22438633 + (TA)n Simple_repeat Simple_repeat 2 61 0 796 169 8 0 chr12 121843883 121844013 -22438476 + AluJ SINE Alu 1 131 -171 721 192 102 30 chr12 121844013 121844046 -22438443 + AluJ SINE Alu 134 163 -149 3812 83 66 36 chr12 121844046 121844624 -22437865 - LTR61 LTR ERV1 0 595 1 721 192 102 30 chr12 121844624 121844757 -22437732 + AluJ SINE Alu 163 312 0 685 134 8 8 chr12 121844766 121844893 -22437596 + (GGAA)n Simple_repeat Simple_repeat 3 129 0 423 265 42 18 chr12 121844895 121845061 -22437428 + L1MD2 LINE L1 5270 5439 -2369 312 221 0 13 chr12 121845108 121845185 -22437304 + LTR56 LTR ERV1 354 429 -16 1989 124 0 32 chr12 121845203 121845517 -22436972 + AluSx SINE Alu 1 304 -8 395 221 0 12 chr12 121845523 121845609 -22436880 + L1MD2 LINE L1 6198 6282 -77 2066 89 38 0 chr12 121845631 121845923 -22436566 + AluSg SINE Alu 1 303 -7 1416 99 18 14 chr12 121846063 121846304 -22436185 + AluSc SINE Alu 57 298 0 186 304 62 36 chr12 121846358 121846470 -22436019 + L2 LINE L2 3087 3201 -112 1050 244 83 34 chr12 121846479 121846753 -22435736 - L2 LINE L2 -6 3307 3048 1550 166 7 34 chr12 121846753 121847048 -22435441 + AluJo SINE Alu 1 287 -25 1050 244 83 34 chr12 121847048 121847377 -22435112 - L2 LINE L2 -265 3048 2667 266 176 47 82 chr12 121847377 121847433 -22435056 - L1MC4 LINE L1 -814 7228 7174 1669 158 92 0 chr12 121847433 121847717 -22434772 - AluJo SINE Alu -2 310 1 266 176 47 82 chr12 121847717 121847745 -22434744 - L1MC4 LINE L1 -868 7174 7147 243 176 0 0 chr12 121847748 121847799 -22434690 - FLAM_A SINE Alu 0 133 83 1178 199 84 77 chr12 121847800 121848203 -22434286 - L1MC4 LINE L1 -888 7154 6749 614 126 24 16 chr12 121848268 121848395 -22434094 + CT-rich Low_complexity Low_complexity 3 130 0 189 253 13 13 chr12 121848407 121848486 -22434003 + CT-rich Low_complexity Low_complexity 4 82 0 259 392 0 0 chr12 121848667 121848718 -22433771 + A-rich Low_complexity Low_complexity 1 51 0 * 297 252 20 41 chr12 121848710 121848857 -22433632 + GA-rich Low_complexity Low_complexity 3 146 0 292 253 33 33 chr12 121848980 121849130 -22433359 + L1MC4a LINE L1 6153 6302 -1506 254 114 0 0 chr12 121849154 121849189 -22433300 - Alu SINE Alu -265 35 1 747 168 0 0 chr12 121849236 121849379 -22433110 + GA-rich Low_complexity Low_complexity 4 146 0 2062 93 42 0 chr12 121849395 121849684 -22432805 - AluSx SINE Alu -11 301 1 859 238 29 63 chr12 121849690 121850014 -22432475 + L1MC4a LINE L1 6374 6675 -1133 1493 214 3 37 chr12 121850018 121850341 -22432148 + AluJb SINE Alu 1 312 0 431 190 5 38 chr12 121850350 121850534 -22431955 + GA-rich Low_complexity Low_complexity 2 179 0 2298 85 3 0 chr12 121850833 121851138 -22431351 + AluY SINE Alu 3 308 -3 1820 137 18 4 chr12 121851215 121851515 -22430974 - AluJo SINE Alu 0 304 1 2111 134 0 0 chr12 121851521 121851828 -22430661 - AluSg SINE Alu -3 307 1 528 249 9 15 chr12 121851828 121852033 -22430456 - L1MC/D LINE L1 -1985 5823 5580 750 170 0 30 chr12 121852183 121852318 -22430171 - FLAM_C SINE Alu -6 137 7 2010 120 33 0 chr12 121852336 121852636 -22429853 - AluSg SINE Alu 0 310 1 2145 122 3 3 chr12 121852689 121853000 -22429489 + AluSx SINE Alu 1 311 -1 462 239 42 28 chr12 121853050 121853192 -22429297 + MIR SINE MIR 46 189 -73 4003 129 14 28 chr12 121853495 121853629 -22428860 - L1PA16 LINE L1 -2 6164 6030 2263 92 0 13 chr12 121853629 121853795 -22428694 - AluSx SINE Alu -13 299 137 2086 80 3 54 chr12 121853795 121854109 -22428380 - AluY SINE Alu -13 298 1 2263 92 0 13 chr12 121854109 121854245 -22428244 - AluSx SINE Alu -175 137 1 1967 99 10 14 chr12 121854251 121854694 -22427795 - AluSc SINE Alu 0 309 1 4003 129 14 28 chr12 121854694 121855196 -22427293 - L1PA16 LINE L1 -141 6025 5530 206 301 58 39 chr12 121855230 121855333 -22427156 + L2 LINE L2 3182 3286 -27 745 219 6 0 chr12 121855480 121855640 -22426849 - LTR16C LTR ERVL 0 491 331 269 258 219 8 chr12 121856307 121856435 -22426054 - MIR3 SINE MIR -22 186 32 * 412 307 27 15 chr12 121856366 121856525 -22425964 + MIR SINE MIR 11 168 -40 * 674 256 28 11 chr12 121856521 121856701 -22425788 - MIR SINE MIR -14 248 66 2293 96 3 0 chr12 121856887 121857190 -22425299 + AluSx SINE Alu 1 304 -8 1574 163 0 51 chr12 121857890 121858185 -22424304 + AluJo SINE Alu 1 280 -32 541 176 24 40 chr12 121858214 121858339 -22424150 - MLT1C LTR MaLR -292 175 53 2200 95 3 3 chr12 121858349 121858643 -22423846 - AluSx SINE Alu -17 295 2 214 380 13 0 chr12 121859298 121859377 -22423112 + L2 LINE L2 3192 3271 -1 532 332 112 27 chr12 121859408 121859739 -22422750 + L2 LINE L2 2914 3272 0 247 167 30 0 chr12 121859768 121859834 -22422655 + (TGGA)n Simple_repeat Simple_repeat 4 71 0 389 208 19 13 chr12 121859903 121860057 -22422432 + (TGGA)n Simple_repeat Simple_repeat 3 157 0 653 294 5 16 chr12 121860893 121861087 -22421402 - MIR SINE MIR 0 262 71 398 231 24 0 chr12 121861126 121861295 -22421194 + (TCCA)n Simple_repeat Simple_repeat 3 175 0 209 225 0 0 chr12 121861316 121861356 -22421133 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 629 171 17 22 chr12 121861358 121861539 -22420950 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 397 253 23 0 chr12 121861570 121861836 -22420653 + (TCCA)n Simple_repeat Simple_repeat 1 272 0 207 182 0 0 chr12 121862334 121862378 -22420111 + MIR SINE MIR 81 124 -84 1765 148 0 7 chr12 121862466 121862750 -22419739 - AluJo SINE Alu -10 302 21 350 232 56 40 chr12 121862977 121863102 -22419387 + MIR SINE MIR 18 144 -118 509 212 176 6 chr12 121863214 121863379 -22419110 - MIR SINE MIR -12 250 58 1605 182 57 68 chr12 121864462 121864682 -22417807 - MLT1A1 LTR MaLR 0 365 149 1988 154 0 0 chr12 121864682 121864994 -22417495 - AluSx SINE Alu 0 312 1 1605 182 57 68 chr12 121864994 121865142 -22417347 - MLT1A1 LTR MaLR -216 149 1 206 349 0 0 chr12 121865163 121865249 -22417240 + (TG)n Simple_repeat Simple_repeat 1 86 0 466 198 87 48 chr12 121865350 121865476 -22417013 - MER102a DNA MER1_type -9 321 191 520 196 28 35 chr12 121865611 121865754 -22416735 + MLT1K LTR MaLR 139 280 -308 1833 150 10 16 chr12 121866232 121866545 -22415944 - AluSx SINE Alu 0 312 2 1371 226 71 92 chr12 121866933 121867039 -22415450 - MLT1J LTR MaLR 0 511 404 1918 131 4 0 chr12 121867039 121867313 -22415176 + AluSx SINE Alu 1 275 -37 233 57 29 0 chr12 121867313 121867348 -22415141 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1371 226 71 92 chr12 121867348 121867727 -22414762 - MLT1J LTR MaLR -106 405 34 1733 174 23 0 chr12 121867727 121868031 -22414458 + AluSx SINE Alu 1 311 -1 1371 226 71 92 chr12 121868031 121868065 -22414424 - MLT1J LTR MaLR -477 34 1 985 263 108 35 chr12 121868131 121868503 -22413986 - MLT1J LTR MaLR -112 399 1 224 316 137 47 chr12 121868653 121868909 -22413580 - L2 LINE L2 -723 2591 2313 * 733 228 90 39 chr12 121868876 121869109 -22413380 - L2 LINE L2 -2 3311 3067 254 250 12 12 chr12 121869116 121869196 -22413293 - L1MC5 LINE L1 -179 7782 7703 1187 178 0 14 chr12 121869209 121869422 -22413067 + AluJo SINE Alu 88 297 -15 2253 121 0 0 chr12 121869422 121869735 -22412754 + AluSq SINE Alu 1 313 0 288 0 0 0 chr12 121869763 121869795 -22412694 + (GA)n Simple_repeat Simple_repeat 1 32 0 826 138 23 15 chr12 121869844 121869974 -22412515 - FLAM_C SINE Alu 0 133 3 498 226 184 40 chr12 121870032 121870337 -22412152 - L2 LINE L2 -248 3065 2731 715 263 98 87 chr12 121870418 121870665 -22411824 + LTR16A1 LTR ERVL 1 244 -213 1765 108 23 8 chr12 121870665 121870925 -22411564 + AluSq SINE Alu 1 264 -49 795 65 16 16 chr12 121870925 121871049 -22411440 + (GAA)n Simple_repeat Simple_repeat 3 126 0 715 263 98 87 chr12 121871049 121871248 -22411241 + LTR16A1 LTR ERVL 243 453 -4 227 207 0 17 chr12 121871783 121871841 -22410648 - MIR SINE MIR -88 174 118 482 225 50 0 chr12 121871922 121872042 -22410447 + MIR SINE MIR 48 173 -89 804 234 6 0 chr12 121872197 121872355 -22410134 - FRAM SINE Alu -14 162 4 332 284 67 71 chr12 121872363 121872631 -22409858 + L1MCa LINE L1 1895 2161 -4265 326 309 70 55 chr12 121872488 121872951 -22409538 - L1MCa LINE L1 -12 8229 1954 * 396 87 75 46 chr12 121872952 121873125 -22409364 + (CATAT)n Simple_repeat Simple_repeat 1 178 0 182 68 108 27 chr12 121873137 121873211 -22409278 + (CATAT)n Simple_repeat Simple_repeat 1 80 0 302 231 21 91 chr12 121873238 121873381 -22409108 - L1MCa LINE L1 -4335 2091 1959 22 35 0 0 chr12 121873384 121873413 -22409076 + AT_rich Low_complexity Low_complexity 1 29 0 1706 205 0 0 chr12 121873418 121873725 -22408764 + AluJo SINE Alu 1 307 -5 295 207 37 37 chr12 121873727 121873809 -22408680 - MER96B DNA MER1_type? -327 90 9 326 360 15 7 chr12 121873910 121874046 -22408443 + L2 LINE L2 3136 3272 0 626 86 0 32 chr12 121874089 121874182 -22408307 - AluJ/FRAM SINE Alu -7 305 216 341 264 0 0 chr12 121874246 121874333 -22408156 - MIR SINE MIR -115 147 61 1748 158 0 41 chr12 121874498 121874815 -22407674 - AluJo SINE Alu -8 304 1 835 259 147 3 chr12 121874872 121875212 -22407277 + MER113 DNA MER1_type? 133 521 0 2067 104 9 25 chr12 121875433 121875750 -22406739 - AluSx SINE Alu 0 312 1 2110 130 7 0 chr12 121875750 121876057 -22406432 - AluSx SINE Alu -3 309 1 1955 184 15 15 chr12 121876082 121876452 -22406037 - L1MB5 LINE L1 -23 6151 5779 1618 172 0 67 chr12 121876452 121876467 -22406022 - AluJb SINE Alu -3 309 295 180 0 0 0 chr12 121876467 121876487 -22406002 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 1618 172 0 67 chr12 121876487 121876802 -22405687 - AluJb SINE Alu -17 295 1 1955 184 15 15 chr12 121876802 121876833 -22405656 - L1MB5 LINE L1 -394 5780 5750 1279 173 45 77 chr12 121876838 121877151 -22405338 - AluJo SINE Alu -4 308 6 2039 138 0 10 chr12 121877229 121877540 -22404949 - AluSx SINE Alu 0 312 5 257 345 28 28 chr12 121877809 121877954 -22404535 - MIR SINE MIR -37 225 81 452 189 33 0 chr12 121878279 121878369 -22404120 - MER5A DNA MER1_type -93 96 4 283 376 0 0 chr12 121878370 121878471 -22404018 + MIR SINE MIR 36 136 -72 384 22 0 0 chr12 121879536 121879581 -22402908 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 551 292 31 6 chr12 121879631 121879792 -22402697 + MIR SINE MIR 28 192 -70 180 260 60 0 chr12 121879861 121879911 -22402578 + MER5A DNA MER1_type 39 91 -98 236 296 101 44 chr12 121880367 121880526 -22401963 - MIR SINE MIR -74 188 21 255 339 0 0 chr12 121880874 121881052 -22401437 + (TG)n Simple_repeat Simple_repeat 1 178 0 267 318 18 0 chr12 121881080 121881190 -22401299 + (TG)n Simple_repeat Simple_repeat 2 113 0 206 214 51 10 chr12 121881411 121881509 -22400980 + CT-rich Low_complexity Low_complexity 1 102 0 258 182 0 0 chr12 121881759 121881803 -22400686 + MIR SINE MIR 45 88 -174 301 256 103 111 chr12 121881803 121882161 -22400328 + L1ME4a LINE L1 5616 5971 -150 240 59 0 0 chr12 121882161 121882195 -22400294 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 301 256 103 111 chr12 121882195 121882312 -22400177 + L1ME4a LINE L1 5971 6087 -34 1883 118 8 0 chr12 121882577 121883006 -22399483 - AluSx SINE Alu 0 449 19 311 312 32 0 chr12 121883008 121883101 -22399388 - MIR3 SINE MIR -24 184 89 294 232 50 40 chr12 121883364 121883463 -22399026 - L2 LINE L2 0 3272 3173 260 272 19 10 chr12 121884238 121884341 -22398148 + CT-rich Low_complexity Low_complexity 2 105 0 40 21 0 0 chr12 121884770 121884817 -22397672 + GC_rich Low_complexity Low_complexity 1 47 0 204 310 0 30 chr12 121885189 121885289 -22397200 + G-rich Low_complexity Low_complexity 5 101 0 210 258 31 50 chr12 121885519 121885678 -22396811 + (CAGAGA)n Simple_repeat Simple_repeat 2 157 0 25 0 0 0 chr12 121887090 121887115 -22395374 + GC_rich Low_complexity Low_complexity 1 25 0 200 118 0 59 chr12 121888215 121888266 -22394223 + (T)n Simple_repeat Simple_repeat 1 48 0 183 42 0 0 chr12 121888329 121888353 -22394136 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 262 259 0 121 chr12 121892798 121892972 -22389517 - MIR3 SINE MIR -40 168 16 239 150 17 0 chr12 121895886 121895946 -22386543 + (TG)n Simple_repeat Simple_repeat 2 62 0 314 320 0 41 chr12 121896487 121896659 -22385830 + CT-rich Low_complexity Low_complexity 2 166 0 210 169 34 34 chr12 121898743 121898802 -22383687 + G-rich Low_complexity Low_complexity 4 62 0 180 176 0 0 chr12 121899076 121899110 -22383379 + CT-rich Low_complexity Low_complexity 2 35 0 577 117 0 19 chr12 121899290 121899393 -22383096 + (TTCC)n Simple_repeat Simple_repeat 3 103 0 333 159 0 0 chr12 121900703 121900766 -22381723 + (TG)n Simple_repeat Simple_repeat 2 64 0 275 150 17 0 chr12 121901586 121901646 -22380843 + (TG)n Simple_repeat Simple_repeat 1 61 0 195 42 0 0 chr12 121902095 121902119 -22380370 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 368 231 92 59 chr12 121903895 121904070 -22378419 - MIR SINE MIR -62 146 10 420 20 0 0 chr12 121904113 121904162 -22378327 + (TA)n Simple_repeat Simple_repeat 2 50 0 1350 270 46 14 chr12 121904345 121905135 -22377354 + L2 LINE L2 2449 3313 0 590 249 30 18 chr12 121905542 121905711 -22376778 + MIR SINE MIR 8 178 -84 374 301 24 79 chr12 121905923 121906150 -22376339 + MIR SINE MIR 13 226 -36 321 346 38 38 chr12 121906630 121906763 -22375726 - L2 LINE L2 0 3272 3140 621 214 32 80 chr12 121906859 121907046 -22375443 + MIR SINE MIR 79 256 -6 902 171 53 92 chr12 121907435 121907663 -22374826 + MER20 DNA MER1_type 1 219 0 623 221 174 0 chr12 121908242 121908391 -22374098 - MIR SINE MIR -31 231 57 243 233 70 47 chr12 121908466 121908552 -22373937 + MIR SINE MIR 60 147 -115 371 321 226 14 chr12 121909031 121909535 -22372954 + L2 LINE L2 2252 2862 -452 259 261 90 27 chr12 121909706 121909817 -22372672 + L2 LINE L2 3136 3253 -19 774 264 52 35 chr12 121909934 121910222 -22372267 - L1ME1 LINE L1 -5 6161 5869 424 138 0 0 chr12 121910477 121910542 -22371947 - L2 LINE L2 -1 3312 3248 346 293 68 8 chr12 121910552 121910685 -22371804 + LTR33 LTR ERVL 2 142 -379 964 133 23 0 chr12 121911064 121911237 -22371252 + CT-rich Low_complexity Low_complexity 4 180 0 1305 39 11 17 chr12 121911238 121911419 -22371070 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1501 170 0 9 chr12 121911424 121911654 -22370835 - AluJb SINE Alu -84 228 1 1634 210 13 16 chr12 121911973 121912282 -22370207 - AluJb SINE Alu -4 308 1 443 307 236 7 chr12 121912555 121912851 -22369638 + L3 LINE CR1 1174 1537 -40 198 273 61 15 chr12 121912852 121912918 -22369571 + MER5A DNA MER1_type 6 74 -115 * 445 320 58 85 chr12 121912914 121913199 -22369290 - L2 LINE L2 0 3313 3022 2857 79 0 0 chr12 121913199 121913553 -22368936 + THE1A LTR MaLR 1 354 -1 12306 89 1 5 chr12 121913554 121915140 -22367349 + THE1A-int LTR MaLR 1 1580 0 2790 79 3 3 chr12 121915140 121915495 -22366994 + THE1A LTR MaLR 1 355 0 1583 180 0 18 chr12 121915505 121915777 -22366712 - AluJo SINE Alu -45 267 1 445 320 58 85 chr12 121915777 121915855 -22366634 - L2 LINE L2 -299 3014 2946 241 273 23 80 chr12 121915956 121916044 -22366445 + MER5B DNA MER1_type 89 171 -7 598 272 14 7 chr12 121916398 121916545 -22365944 - MER45A DNA AcHobo -30 148 1 1979 144 6 16 chr12 121916601 121916914 -22365575 + AluSx SINE Alu 3 312 0 629 288 26 13 chr12 121916964 121917197 -22365292 - MIR SINE MIR -20 242 7 192 284 30 0 chr12 121917339 121917406 -22365083 + L2 LINE L2 2617 2685 -629 997 169 24 0 chr12 121917424 121917590 -22364899 - AluJb SINE Alu -25 287 118 270 128 0 0 chr12 121917596 121917643 -22364846 - L1MB4 LINE L1 -8 6172 6126 2176 206 39 8 chr12 121917666 121918151 -22364338 - L1MB4 LINE L1 -28 6152 5653 1138 126 17 7 chr12 121918176 121918479 -22364010 + (TCTA)n Simple_repeat Simple_repeat 1 306 0 2077 107 0 54 chr12 121918491 121918789 -22363700 - AluSx SINE Alu -30 282 1 818 273 125 3 chr12 121918844 121919220 -22363269 + L2 LINE L2 2708 3124 -189 296 44 44 0 chr12 121919220 121919265 -22363224 + (TTTC)n Simple_repeat Simple_repeat 4 50 0 889 178 6 18 chr12 121919265 121919428 -22363061 - FRAM SINE Alu 0 40 1 272 289 233 0 chr12 121919436 121919578 -22362911 + L2 LINE L2 3118 3302 -11 320 225 0 0 chr12 121919578 121919658 -22362831 + MER116 DNA Mariner 1 80 0 272 289 233 0 chr12 121919658 121919674 -22362815 + L2 LINE L2 3302 3313 0 253 250 152 38 chr12 121919892 121920024 -22362465 + L3b LINE CR1 1149 1295 -288 286 240 0 11 chr12 121920085 121920264 -22362225 + (TG)n Simple_repeat Simple_repeat 2 178 0 297 227 28 8 chr12 121920302 121920560 -22361929 + (TCTG)n Simple_repeat Simple_repeat 1 263 0 511 222 19 0 chr12 121920859 121920967 -22361522 - MIR SINE MIR -93 169 60 474 249 5 127 chr12 121921415 121921580 -22360909 + MER5A DNA MER1_type 8 145 -44 2015 107 65 28 chr12 121921580 121921870 -22360619 - AluSx SINE Alu -11 301 1 474 249 5 127 chr12 121921870 121921909 -22360580 + MER5A DNA MER1_type 145 187 -2 286 362 110 20 chr12 121921925 121922179 -22360310 - L2 LINE L2 -470 2844 2568 202 244 85 37 chr12 121922337 121922419 -22360070 - L2 LINE L2 -216 3056 2971 192 77 0 0 chr12 121923581 121923607 -22358882 + (CA)n Simple_repeat Simple_repeat 2 27 0 261 0 0 0 chr12 121923719 121923748 -22358741 + (CA)n Simple_repeat Simple_repeat 1 29 0 551 315 75 47 chr12 121924512 121925004 -22357485 + L1ME3A LINE L1 5378 5883 -287 1469 246 32 23 chr12 121925047 121925481 -22357008 + L1ME1 LINE L1 5724 6161 -5 1083 196 0 0 chr12 121925648 121925827 -22356662 + AluJo SINE Alu 100 278 -34 264 59 0 0 chr12 121925827 121925861 -22356628 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 204 99 84 0 chr12 121925861 121925932 -22356557 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 304 218 45 75 chr12 121926350 121926483 -22356006 + MLT1I LTR MaLR 281 409 0 712 94 154 8 chr12 121926659 121926819 -22355670 + AluSg/x SINE Alu 149 325 0 242 340 118 20 chr12 121927037 121927190 -22355299 + L2 LINE L2 2859 3026 -246 799 232 5 41 chr12 121927201 121927395 -22355094 - MIR SINE MIR -10 252 66 2289 89 0 0 chr12 121927408 121927714 -22354775 + AluSg SINE Alu 1 306 0 1031 274 95 45 chr12 121928163 121928840 -22353649 + L2 LINE L2 2501 3222 -91 1889 94 68 4 chr12 121928851 121929147 -22353342 - AluSx SINE Alu 0 315 3 245 211 39 0 chr12 121929162 121929214 -22353275 + MIR SINE MIR 66 119 -143 1024 239 19 0 chr12 121929248 121929461 -22353028 + MER58A DNA MER1_type 5 221 -3 299 217 0 0 chr12 121929463 121929523 -22352966 + L2 LINE L2 3213 3272 0 548 223 23 15 chr12 121929648 121929778 -22352711 - MLT1K LTR MaLR -8 580 450 472 284 28 0 chr12 121929814 121929955 -22352534 + MIR SINE MIR 65 209 -53 1836 161 30 7 chr12 121929962 121930266 -22352223 - AluJb SINE Alu -1 311 1 2667 142 4 59 chr12 121930278 121930785 -22351704 + MLT1D LTR MaLR 27 505 0 214 233 0 0 chr12 121930786 121930829 -22351660 + MIR SINE MIR 199 241 -21 754 226 30 89 chr12 121931608 121931673 -22350816 - MIR SINE MIR -22 240 173 451 155 19 0 chr12 121931673 121931776 -22350713 - L1MA8 LINE L1 0 6291 6187 754 226 30 89 chr12 121931776 121931950 -22350539 - MIR SINE MIR -89 173 17 2019 135 4 0 chr12 121931973 121932280 -22350209 - AluSx SINE Alu 0 308 1 328 251 50 132 chr12 121932417 121932636 -22349853 - MIR SINE MIR -32 230 30 812 221 67 29 chr12 121932677 121932917 -22349572 - MLT1C LTR MaLR -8 459 211 868 137 0 23 chr12 121932999 121933130 -22349359 + FLAM_C SINE Alu 9 136 -7 525 213 69 50 chr12 121933145 121933305 -22349184 - MLT1C LTR MaLR -227 163 1 319 211 333 9 chr12 121933431 121933545 -22348944 + L2 LINE L2 3122 3272 0 216 175 0 0 chr12 121934387 121934427 -22348062 + C-rich Low_complexity Low_complexity 6 45 0 254 214 165 0 chr12 121934513 121934616 -22347873 + MIR3 SINE MIR 53 172 -36 542 220 0 0 chr12 121935174 121935274 -22347215 - L2 LINE L2 0 3313 3214 338 204 10 68 chr12 121935344 121935415 -22347074 - L1ME LINE L1 -353 5817 5752 2152 172 10 22 chr12 121935415 121935821 -22346668 - MER57A LTR ERV1 -2 401 1 338 204 10 68 chr12 121935821 121935852 -22346637 - L1ME LINE L1 -418 5752 5721 4391 99 9 58 chr12 121935981 121936520 -22345969 + MER41B LTR ERV1 1 503 -132 2154 119 0 0 chr12 121936520 121936828 -22345661 - AluSx SINE Alu 0 308 1 4391 99 9 58 chr12 121936828 121936955 -22345534 + MER41B LTR ERV1 503 635 0 252 86 0 0 chr12 121937596 121937631 -22344858 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 429 135 0 198 chr12 121938028 121938139 -22344350 - L2 LINE L2 0 3313 3225 404 239 37 9 chr12 121938277 121938386 -22344103 + MIR SINE MIR 23 134 -128 774 120 0 0 chr12 121938391 121938516 -22343973 + (TCCC)n Simple_repeat Simple_repeat 1 125 0 2295 122 0 0 chr12 121938516 121938819 -22343670 - AluSx SINE Alu -9 303 1 1759 167 57 0 chr12 121938821 121939102 -22343387 - AluJo SINE Alu -15 297 1 4479 211 61 49 chr12 121939117 121940128 -22342361 - L1MC4 LINE L1 0 8042 7010 1918 171 0 3 chr12 121940128 121940420 -22342069 - AluJo SINE Alu -20 292 2 4479 211 61 49 chr12 121940420 121940720 -22341769 - L1MC4 LINE L1 -1032 7010 6715 495 285 29 0 chr12 121940729 121940866 -22341623 + MIR SINE MIR 117 257 -5 718 246 159 22 chr12 121940868 121941100 -22341389 - L2 LINE L2 -143 3170 2907 23 0 0 0 chr12 121941136 121941159 -22341330 + AT_rich Low_complexity Low_complexity 1 23 0 970 205 0 0 chr12 121941169 121941335 -22341154 - FRAM SINE Alu 0 166 1 492 284 51 47 chr12 121941452 121941667 -22340822 - MIR SINE MIR -17 245 30 234 0 0 0 chr12 121942632 121942658 -22339831 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 280 271 52 21 chr12 121943002 121943098 -22339391 + L2 LINE L2 3162 3260 -12 226 289 134 10 chr12 121943155 121943252 -22339237 - MIR SINE MIR -63 145 37 531 110 0 0 chr12 121943407 121943480 -22339009 + FRAM SINE Alu 20 92 -84 26 0 0 0 chr12 121943489 121943515 -22338974 + AT_rich Low_complexity Low_complexity 1 26 0 665 268 12 6 chr12 121943697 121943861 -22338628 + MER5B DNA MER1_type 7 171 -7 483 281 127 56 chr12 121943869 121944136 -22338353 + L2 LINE L2 2985 3270 -2 470 322 67 0 chr12 121944620 121944769 -22337720 + MIR SINE MIR 20 178 -84 251 143 238 12 chr12 121944830 121944914 -22337575 + MIR SINE MIR 147 249 -13 1227 163 0 0 chr12 121945235 121945425 -22337064 + AluSg/x SINE Alu 118 307 -5 1105 262 173 32 chr12 121945738 121946227 -22336262 + L2 LINE L2 2668 3240 -73 1544 146 0 4 chr12 121946227 121946466 -22336023 - AluSg/x SINE Alu -3 307 70 1105 262 173 32 chr12 121946466 121946525 -22335964 + L2 LINE L2 3240 3289 -24 802 285 80 44 chr12 121946829 121947099 -22335390 + LTR33A LTR ERVL 8 306 -217 2319 122 0 0 chr12 121947099 121947411 -22335078 - AluSx SINE Alu 0 312 1 802 285 80 44 chr12 121947411 121947638 -22334851 + LTR33A LTR ERVL 306 523 0 840 154 71 18 chr12 121947816 121947985 -22334504 - MER20 DNA MER1_type -40 179 2 302 287 0 91 chr12 121948009 121948152 -22334337 + MER5B DNA MER1_type 2 131 -47 219 286 112 0 chr12 121948210 121948308 -22334181 - MIR SINE MIR -109 153 45 841 270 51 9 chr12 121948928 121949143 -22333346 + MER58A DNA MER1_type 1 224 0 322 260 125 10 chr12 121949185 121949281 -22333208 + MIR SINE MIR 43 149 -59 1944 153 0 19 chr12 121949282 121949596 -22332893 - AluJo SINE Alu -4 308 1 1055 270 144 20 chr12 121949610 121950255 -22332234 + L2 LINE L2 2516 3259 -13 1684 181 10 26 chr12 121950261 121950564 -22331925 + AluJo SINE Alu 1 298 -14 211 333 81 11 chr12 121950596 121950683 -22331806 + MIR SINE MIR 156 248 -14 250 354 13 0 chr12 121951556 121951635 -22330854 - L2 LINE L2 -334 2979 2900 205 229 125 0 chr12 121951919 121951967 -22330522 + MIR SINE MIR 45 98 -110 3998 136 21 17 chr12 121951970 121952796 -22329693 + THE1-int LTR MaLR 290 1063 -517 342 250 23 38 chr12 121953028 121953160 -22329329 + CT-rich Low_complexity Low_complexity 5 134 0 549 0 0 0 chr12 121953522 121953583 -22328906 + (TA)n Simple_repeat Simple_repeat 2 62 0 374 172 17 180 chr12 121953788 121953868 -22328621 - MIR SINE MIR -30 178 131 2463 97 0 0 chr12 121953868 121954179 -22328310 + AluY SINE Alu 1 311 0 374 172 17 180 chr12 121954179 121954255 -22328234 - MIR SINE MIR -77 131 44 682 239 128 14 chr12 121954421 121954639 -22327850 - MIR SINE MIR 0 262 20 296 294 0 0 chr12 121954650 121954742 -22327747 - MLT1H LTR MaLR 0 549 458 634 335 36 5 chr12 121954891 121955115 -22327374 - MLT1H LTR MaLR -296 253 23 231 309 85 11 chr12 121955371 121955465 -22327024 + L2 LINE L2 3192 3292 -21 297 0 0 0 chr12 121955626 121955659 -22326830 + (TG)n Simple_repeat Simple_repeat 1 33 0 610 239 14 21 chr12 121955715 121955857 -22326632 + L2 LINE L2 3172 3312 -1 348 214 29 0 chr12 121955876 121955946 -22326543 - MIR SINE MIR -93 169 98 349 322 58 0 chr12 121956531 121956652 -22325837 + MIR SINE MIR 105 232 -30 481 274 126 17 chr12 121956803 121956978 -22325511 - MIR SINE MIR -6 256 63 212 320 0 0 chr12 121957312 121957390 -22325099 + G-rich Low_complexity Low_complexity 4 81 0 188 159 0 23 chr12 121957390 121957434 -22325055 + GA-rich Low_complexity Low_complexity 1 43 0 233 310 13 37 chr12 121957483 121957707 -22324782 + GA-rich Low_complexity Low_complexity 1 218 0 374 246 34 25 chr12 121957875 121957993 -22324496 - MLT1H LTR MaLR -201 348 230 228 233 0 0 chr12 121959423 121959466 -22323023 + (CA)n Simple_repeat Simple_repeat 1 43 0 443 348 13 0 chr12 121959763 121959918 -22322571 - MIR3 SINE MIR -2 206 50 1154 52 13 0 chr12 121960116 121960269 -22322220 + (TTTC)n Simple_repeat Simple_repeat 4 158 0 304 195 11 58 chr12 121960453 121960540 -22321949 - LTR33 LTR ERVL -9 512 430 651 276 24 38 chr12 121960649 121960859 -22321630 - LTR33 LTR ERVL -307 214 8 1020 219 89 82 chr12 121961395 121961882 -22320607 - MLT1H LTR MaLR 0 549 18 613 304 134 27 chr12 121961932 121962191 -22320298 + L2 LINE L2 2869 3188 -125 2273 117 7 0 chr12 121962191 121962498 -22319991 - AluSx SINE Alu -3 309 1 613 304 134 27 chr12 121962498 121962640 -22319849 + L2 LINE L2 3188 3313 0 1465 242 93 20 chr12 121962910 121963414 -22319075 - MLT1H LTR MaLR -2 547 7 851 319 64 25 chr12 121963639 121964182 -22318307 + L2 LINE L2 2734 3307 -6 225 0 0 0 chr12 121964321 121964346 -22318143 + (TA)n Simple_repeat Simple_repeat 2 26 0 486 48 0 0 chr12 121964350 121964413 -22318076 - L1PA5 LINE L1 -13 6141 6079 735 276 32 28 chr12 121964459 121964676 -22317813 + MIR SINE MIR 12 229 -33 316 296 72 40 chr12 121964653 121964805 -22317684 - MIR SINE MIR -22 240 84 * 493 225 55 21 chr12 121964980 121965143 -22317346 + MIR SINE MIR 34 205 -57 2134 140 7 0 chr12 121965846 121966146 -22316343 - AluSq SINE Alu -11 302 1 959 229 106 67 chr12 121966146 121966608 -22315881 + LTR33 LTR ERVL 38 517 -4 1627 173 3 67 chr12 121966611 121966924 -22315565 + AluJb SINE Alu 6 298 -14 924 137 58 26 chr12 121967219 121967409 -22315080 + MER20 DNA MER1_type 23 218 -1 314 219 140 79 chr12 121967925 121968039 -22314450 + MIR SINE MIR 35 155 -107 980 261 121 38 chr12 121968043 121968491 -22313998 - MLT1H1 LTR MaLR -1 554 70 952 209 19 28 chr12 121968809 121968855 -22313634 - MIR SINE MIR -8 254 209 2012 118 45 0 chr12 121968855 121969142 -22313347 - AluSg SINE Alu -10 300 1 952 209 19 28 chr12 121969142 121969306 -22313183 - MIR SINE MIR -53 209 46 1932 211 68 51 chr12 121969319 121969849 -22312640 - MLT1F1 LTR MaLR 0 567 4 390 364 9 23 chr12 121971309 121971529 -22310960 - MIR SINE MIR -42 220 4 970 208 0 12 chr12 121971932 121972105 -22310384 - AluJo SINE Alu -141 171 1 314 311 0 0 chr12 121972616 121972690 -22309799 + (CACG)n Simple_repeat Simple_repeat 2 75 0 315 0 0 0 chr12 121972986 121973021 -22309468 + (CA)n Simple_repeat Simple_repeat 2 36 0 209 274 16 0 chr12 121973033 121973095 -22309394 + (CA)n Simple_repeat Simple_repeat 2 64 0 195 42 0 0 chr12 121973212 121973236 -22309253 + (CA)n Simple_repeat Simple_repeat 2 25 0 198 143 0 0 chr12 121973271 121973306 -22309183 + (TG)n Simple_repeat Simple_repeat 2 36 0 201 342 56 56 chr12 121973766 121973927 -22308562 + L2 LINE L2 3087 3247 -25 695 273 110 22 chr12 121974061 121974288 -22308201 + MIR SINE MIR 16 262 0 823 168 145 0 chr12 121974396 121974575 -22307914 - MER3 DNA MER1_type 0 209 5 477 0 0 0 chr12 121974943 121974996 -22307493 + (TG)n Simple_repeat Simple_repeat 2 54 0 243 0 0 0 chr12 121975081 121975108 -22307381 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 602 271 50 6 chr12 121975283 121975464 -22307025 + LTR16C LTR ERVL 255 443 -48 876 250 55 17 chr12 121976474 121976710 -22305779 + MIR SINE MIR 18 262 0 464 222 111 43 chr12 121976744 121976906 -22305583 - MIR SINE MIR -70 192 20 373 320 85 13 chr12 121978088 121978241 -22304248 - MIR SINE MIR -19 243 80 615 256 0 72 chr12 121978306 121978394 -22304095 + MER5A DNA MER1_type 9 77 -112 2278 107 0 0 chr12 121978394 121978683 -22303806 - AluSg SINE Alu -21 289 1 615 256 0 72 chr12 121978683 121978789 -22303700 + MER5A DNA MER1_type 77 189 0 644 286 132 29 chr12 121979066 121979428 -22303061 - LTR16A LTR ERVL -2 455 56 217 156 0 0 chr12 121979487 121979519 -22302970 + MIR SINE MIR 119 150 -112 512 268 133 20 chr12 121979597 121979828 -22302661 - MIR SINE MIR -14 248 8 1675 151 49 21 chr12 121980483 121980767 -22301722 + AluJo SINE Alu 1 292 -20 965 187 61 33 chr12 121980776 121980990 -22301499 + MER58A DNA MER1_type 1 220 -4 256 239 54 54 chr12 121981185 121981277 -22301212 + L2 LINE L2 3181 3272 0 254 261 156 6 chr12 121981278 121981375 -22301114 + MIR3 SINE MIR 49 179 -29 2310 129 0 0 chr12 121981375 121981686 -22300803 - AluSx SINE Alu -1 311 1 254 261 156 6 chr12 121981686 121981722 -22300767 + MIR3 SINE MIR 179 208 0 767 204 70 0 chr12 121982557 121982729 -22299760 - MER20 DNA MER1_type -1 218 35 2326 95 3 0 chr12 121982977 121983271 -22299218 - AluSg SINE Alu -15 295 1 6709 88 22 0 chr12 121983640 121984685 -22297804 - L1PA11 LINE L1 0 6174 5121 504 258 17 0 chr12 121984874 121984994 -22297495 - MIR SINE MIR -56 206 85 305 297 9 0 chr12 121984994 121985105 -22297384 + MER113 DNA MER1_type? 306 417 -104 188 189 27 0 chr12 121985112 121985149 -22297340 - MER5A DNA MER1_type -3 186 149 1215 190 43 65 chr12 121985170 121985538 -22296951 + L1MD2 LINE L1 5986 6345 -14 248 276 79 13 chr12 121985549 121985625 -22296864 - MER5A DNA MER1_type -76 113 33 896 204 19 5 chr12 121985784 121985990 -22296499 + MER33 DNA MER1_type 27 235 -89 902 134 0 0 chr12 121985990 121986117 -22296372 + FLAM_C SINE Alu 1 127 -16 330 206 0 39 chr12 121986117 121986219 -22296270 + MER33 DNA MER1_type 227 324 0 272 262 252 28 chr12 121986289 121986396 -22296093 - L2 LINE L2 -1 3271 3141 534 316 38 14 chr12 121986556 121986768 -22295721 - MIR SINE MIR -36 226 10 195 170 0 0 chr12 121987510 121987557 -22294932 + (TG)n Simple_repeat Simple_repeat 1 47 0 281 267 68 7 chr12 121987764 121987910 -22294579 + MIR3 SINE MIR 2 156 -52 733 87 10 0 chr12 121988660 121988764 -22293725 - AluY SINE Alu -204 107 3 896 150 20 13 chr12 121988799 121988952 -22293537 - FRAM SINE Alu -22 154 1 2390 100 0 3 chr12 121989124 121989433 -22293056 + AluSx SINE Alu 2 309 -3 285 367 0 0 chr12 121989582 121989691 -22292798 + (TGGG)n Simple_repeat Simple_repeat 2 110 0 215 212 0 15 chr12 121989710 121989776 -22292713 + (TGGG)n Simple_repeat Simple_repeat 4 68 0 632 266 9 6 chr12 121989874 121990219 -22292270 + (TGGA)n Simple_repeat Simple_repeat 1 346 0 332 190 13 0 chr12 121990250 121990329 -22292160 + (TGGA)n Simple_repeat Simple_repeat 3 82 0 205 256 0 0 chr12 121990348 121990391 -22292098 + (TGGA)n Simple_repeat Simple_repeat 1 43 0 279 0 0 0 chr12 121991071 121991102 -22291387 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2227 107 0 0 chr12 121991105 121991386 -22291103 - AluSx SINE Alu -31 281 1 200 180 0 20 chr12 121992030 121992080 -22290409 + GA-rich Low_complexity Low_complexity 5 53 0 270 328 5 5 chr12 121992245 121992430 -22290059 + (CA)n Simple_repeat Simple_repeat 1 186 0 2078 126 34 0 chr12 121992769 121993062 -22289427 - AluSx SINE Alu -5 307 5 273 267 95 19 chr12 121993100 121993205 -22289284 - MIR SINE MIR -118 144 32 1674 170 13 29 chr12 121993284 121993590 -22288899 + AluJb SINE Alu 3 303 -9 371 317 41 37 chr12 121993801 121993858 -22288631 - L1ME3A LINE L1 -208 5962 5907 1084 195 9 44 chr12 121993858 121994084 -22288405 - MER20 DNA MER1_type -1 218 1 371 317 41 37 chr12 121994084 121994297 -22288192 - L1ME3A LINE L1 -263 5907 5691 227 340 40 0 chr12 121994475 121994575 -22287914 + MIR SINE MIR 35 138 -124 594 197 0 34 chr12 121994633 121994688 -22287801 - MIR SINE MIR -87 175 120 1776 162 3 39 chr12 121994688 121994996 -22287493 + AluJo SINE Alu 1 297 -15 594 197 0 34 chr12 121994996 121995057 -22287432 - MIR SINE MIR -142 120 63 325 314 155 69 chr12 121995083 121995425 -22287064 - L2 LINE L2 -2 3311 2925 4212 94 4 0 chr12 121995425 121995977 -22286512 + MER41A LTR ERV1 1 554 0 325 314 155 69 chr12 121995977 121996054 -22286435 - L2 LINE L2 -388 2925 2856 260 278 17 61 chr12 121996539 121996654 -22285835 + MIR SINE MIR 58 167 -95 183 286 14 14 chr12 121996811 121996881 -22285608 - L3b LINE CR1 -340 1243 1174 312 219 95 19 chr12 121997371 121997495 -22284994 + L1M4 LINE L1 3775 3911 -2235 351 304 57 36 chr12 121998137 121998384 -22284105 + L1M4 LINE L1 4032 4283 -1863 466 268 128 34 chr12 121998779 121998958 -22283531 + MIR SINE MIR 3 198 -64 260 313 12 24 chr12 121999030 121999113 -22283376 + L2 LINE L2 3226 3307 -6 237 345 58 0 chr12 121999117 121999204 -22283285 - L2 LINE L2 -13 3300 3209 509 341 86 9 chr12 121999354 121999574 -22282915 + MIR SINE MIR 16 252 -10 303 217 194 21 chr12 121999539 121999683 -22282806 - MIR3 SINE MIR -51 211 37 * 2142 161 65 0 chr12 122000266 122000638 -22281851 - MSTD LTR MaLR 0 396 1 234 229 59 68 chr12 122001056 122001174 -22281315 + L1MC4a LINE L1 6058 6174 -1634 351 236 24 24 chr12 122001305 122001428 -22281061 - L1ME4a LINE L1 -38 6083 5961 372 283 14 38 chr12 122002349 122002596 -22279893 + GA-rich Low_complexity Low_complexity 1 241 0 393 213 0 0 chr12 122003397 122003477 -22279012 + MIR SINE MIR 112 191 -71 2162 119 7 0 chr12 122003903 122004196 -22278293 + AluSx SINE Alu 6 300 -12 366 207 35 35 chr12 122004812 122004899 -22277590 + MIR SINE MIR 21 107 -155 285 125 62 0 chr12 122004910 122004958 -22277531 - MLT1H1 LTR MaLR -12 543 493 835 142 0 0 chr12 122004959 122005079 -22277410 + AluSq/x SINE Alu 1 120 -192 330 26 0 0 chr12 122005080 122005119 -22277370 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 292 246 0 0 chr12 122005231 122005292 -22277197 - L2 LINE L2 -5 3308 3248 217 0 0 0 chr12 122005354 122005378 -22277111 + (TTTG)n Simple_repeat Simple_repeat 1 80 0 940 50 0 2 chr12 122005378 122005619 -22276870 - AluY SINE Alu -31 280 1 34 24 0 0 chr12 122005802 122005843 -22276646 + AT_rich Low_complexity Low_complexity 1 41 0 351 224 35 9 chr12 122005856 122005972 -22276517 + (TG)n Simple_repeat Simple_repeat 2 120 0 1102 139 0 0 chr12 122006003 122006169 -22276320 - AluSg/x SINE Alu -15 295 130 2238 100 3 3 chr12 122006170 122006479 -22276010 - AluSg SINE Alu -1 309 1 273 302 47 0 chr12 122006572 122006658 -22275831 - MIR SINE MIR -76 132 43 203 311 0 14 chr12 122007410 122007497 -22274992 + MIR SINE MIR 80 132 -76 2201 115 0 0 chr12 122008120 122008432 -22274057 + AluSx SINE Alu 1 312 0 952 226 99 101 chr12 122008551 122008976 -22273513 - LTR16C LTR ERVL 0 491 68 358 296 96 8 chr12 122009390 122009515 -22272974 - MIR SINE MIR -93 169 34 1414 186 36 46 chr12 122009552 122009859 -22272630 + AluJo SINE Alu 1 304 -8 219 69 0 0 chr12 122009859 122009888 -22272601 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 443 133 48 0 chr12 122009888 122009971 -22272518 + LTR8A LTR ERV1 308 394 -333 899 166 4 116 chr12 122010069 122010310 -22272179 - MER20 DNA MER1_type -5 214 1 2024 139 0 0 chr12 122010624 122010925 -22271564 - AluSx SINE Alu -3 309 9 1501 271 64 16 chr12 122011118 122011917 -22270572 - L2 LINE L2 -10 3303 2463 2137 90 3 27 chr12 122011925 122012225 -22270264 + AluSx SINE Alu 1 293 -19 339 256 163 23 chr12 122012245 122012417 -22270072 - MIR SINE MIR 0 262 67 191 161 0 0 chr12 122012711 122012742 -22269747 + MIR SINE MIR 114 144 -64 2086 106 0 3 chr12 122012791 122013084 -22269405 - AluSx SINE Alu 0 312 21 1898 124 3 17 chr12 122013219 122013518 -22268971 - AluJb SINE Alu -17 295 1 922 270 54 4 chr12 122013519 122013760 -22268729 - MIR SINE MIR -6 256 4 2026 133 0 3 chr12 122014082 122014376 -22268113 + AluJb SINE Alu 2 294 -18 1095 184 77 42 chr12 122014395 122014598 -22267891 + L1MB7 LINE L1 5742 5937 -247 2185 102 7 0 chr12 122014598 122014893 -22267596 + AluSx SINE Alu 1 297 -15 1095 184 77 42 chr12 122014893 122015065 -22267424 + L1MB7 LINE L1 5937 6184 0 739 192 64 0 chr12 122015184 122015309 -22267180 - FLAM_A SINE Alu 0 133 1 2111 115 3 0 chr12 122015318 122015613 -22266876 - AluJb SINE Alu -16 296 1 204 382 53 10 chr12 122015928 122016135 -22266354 + MIR SINE MIR 35 250 -12 209 108 27 0 chr12 122016458 122016495 -22265994 + (TG)n Simple_repeat Simple_repeat 1 38 0 246 62 0 0 chr12 122016593 122016625 -22265864 + (ATG)n Simple_repeat Simple_repeat 1 32 0 556 266 0 0 chr12 122016691 122016815 -22265674 - MIR SINE MIR -89 173 50 316 89 0 0 chr12 122016940 122016985 -22265504 - L1MA1 LINE L1 -4 6298 6254 2213 104 0 0 chr12 122017001 122017298 -22265191 - AluSx SINE Alu -15 297 1 513 247 41 7 chr12 122017298 122017444 -22265045 + MIR SINE MIR 15 165 -97 285 315 15 46 chr12 122017511 122017641 -22264848 - MIR SINE MIR -14 248 123 1277 116 82 39 chr12 122017641 122017660 -22264829 - MER4C LTR ERV1 0 465 448 2051 109 13 3 chr12 122017660 122017962 -22264527 + AluSq SINE Alu 1 305 -8 1277 116 82 39 chr12 122017962 122018314 -22264175 - MER4C LTR ERV1 -17 448 16 1179 181 42 67 chr12 122018320 122018539 -22263950 - MER4C-int LTR ERV1 -4418 2180 1974 1827 161 13 7 chr12 122018539 122018849 -22263640 - AluJb SINE Alu 0 312 1 1179 181 42 67 chr12 122018849 122019032 -22263457 - MER4C-int LTR ERV1 -4624 1974 1788 814 142 44 48 chr12 122019037 122019256 -22263233 + AluJb SINE Alu 6 308 -4 793 180 110 61 chr12 122019256 122019484 -22263005 - MER4C-int LTR ERV1 -4046 969 731 26 0 0 0 chr12 122019486 122019512 -22262977 + AT_rich Low_complexity Low_complexity 1 26 0 1181 172 61 50 chr12 122019543 122019886 -22262603 - MER4C-int LTR ERV1 -5043 1555 1209 1921 152 0 19 chr12 122019886 122020202 -22262287 + AluSx SINE Alu 1 310 -2 186 43 0 0 chr12 122020216 122020239 -22262250 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 * 243 0 0 0 chr12 122020238 122020265 -22262224 + (CA)n Simple_repeat Simple_repeat 2 28 0 1695 188 124 69 chr12 122020265 122021167 -22261322 - MER4C-int LTR ERV1 -5487 1111 68 1848 139 4 4 chr12 122021167 122021441 -22261048 + AluSx SINE Alu 1 274 -38 1695 188 124 69 chr12 122021441 122021506 -22260983 - MER4C-int LTR ERV1 -6530 68 8 2703 113 63 58 chr12 122021517 122021834 -22260655 - MER4C LTR ERV1 0 465 144 1736 105 45 0 chr12 122021834 122022081 -22260408 - AluSx SINE Alu -21 291 34 2703 113 63 58 chr12 122022081 122022225 -22260264 - MER4C LTR ERV1 -321 144 2 1540 158 0 64 chr12 122022686 122022818 -22259671 + AluJo SINE Alu 1 140 -172 1813 70 0 4 chr12 122022818 122023046 -22259443 - AluSg/x SINE Alu -18 294 68 1540 158 0 64 chr12 122023046 122023224 -22259265 + AluJo SINE Alu 140 291 -21 360 210 0 12 chr12 122023261 122023342 -22259147 + MIR SINE MIR 112 191 -71 183 374 65 36 chr12 122024052 122024191 -22258298 + L3 LINE CR1 1346 1488 -89 552 151 255 0 chr12 122024399 122024505 -22257984 + FLAM_C SINE Alu 2 134 -9 * 777 156 0 0 chr12 122024496 122024618 -22257871 + AluSc SINE Alu 188 309 0 591 240 78 21 chr12 122024658 122024850 -22257639 + L2 LINE L2 3106 3308 -5 385 217 139 9 chr12 122024917 122025032 -22257457 - MIR SINE MIR -112 150 21 281 145 72 0 chr12 122025212 122025295 -22257194 + (TGGA)n Simple_repeat Simple_repeat 1 89 0 744 202 8 16 chr12 122025353 122025611 -22256878 + (TGGA)n Simple_repeat Simple_repeat 1 256 0 653 218 4 15 chr12 122025632 122026103 -22256386 + (TGGA)n Simple_repeat Simple_repeat 1 465 0 285 297 14 0 chr12 122026184 122026258 -22256231 + (TGGA)n Simple_repeat Simple_repeat 4 78 0 2137 125 3 0 chr12 122026259 122026570 -22255919 + AluSx SINE Alu 1 312 0 436 184 43 0 chr12 122026579 122026720 -22255769 + (TGGA)n Simple_repeat Simple_repeat 4 150 0 180 0 0 0 chr12 122026959 122026979 -22255510 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 2173 83 21 3 chr12 122027915 122028205 -22254284 - AluSx SINE Alu -17 295 1 183 306 73 32 chr12 122028663 122028787 -22253702 + L2 LINE L2 2949 3077 -195 2204 104 3 0 chr12 122029446 122029745 -22252744 + AluSx SINE Alu 1 300 -12 1343 137 6 109 chr12 122029751 122030094 -22252395 + AluSc SINE Alu 6 315 0 433 299 10 72 chr12 122030159 122030216 -22252273 + MIR SINE MIR 14 73 -189 2091 136 0 0 chr12 122030216 122030518 -22251971 + AluSx SINE Alu 3 304 -8 433 299 10 72 chr12 122030518 122030667 -22251822 + MIR SINE MIR 73 207 -55 206 278 37 0 chr12 122031829 122031883 -22250606 + MIR SINE MIR 94 149 -59 2147 113 7 0 chr12 122032243 122032543 -22249946 - AluSx SINE Alu -6 306 5 426 307 79 50 chr12 122032547 122032827 -22249662 + L2 LINE L2 3009 3296 -17 2156 126 7 0 chr12 122032952 122033261 -22249228 - AluSx SINE Alu -1 311 1 555 221 64 23 chr12 122033266 122033438 -22249051 - MIR SINE MIR -64 198 20 1920 104 25 4 chr12 122033936 122034216 -22248273 + AluSx SINE Alu 1 286 -26 288 70 0 0 chr12 122034216 122034259 -22248230 + (CCA)n Simple_repeat Simple_repeat 2 44 0 423 190 17 139 chr12 122034515 122034752 -22247737 + L1MC5 LINE L1 7492 7699 -262 348 179 18 80 chr12 122034741 122034853 -22247636 - L1ME1 LINE L1 -2 6332 6070 * 1964 139 0 3 chr12 122034881 122035169 -22247320 + AluJb SINE Alu 1 287 -25 315 271 51 56 chr12 122035173 122035329 -22247160 + L1MC5 LINE L1 7701 7857 -104 2175 109 0 7 chr12 122035329 122035632 -22246857 - AluSx SINE Alu -7 305 5 315 271 51 56 chr12 122035632 122035689 -22246800 + L1MC5 LINE L1 7857 7913 -48 314 184 35 46 chr12 122035816 122035903 -22246586 + L2 LINE L2 3228 3313 0 252 250 35 13 chr12 122035988 122036075 -22246414 - MIR3 SINE MIR -50 158 70 204 227 15 15 chr12 122036378 122036444 -22246045 + GA-rich Low_complexity Low_complexity 2 67 0 1290 291 117 11 chr12 122036849 122037319 -22245170 - MLT1K LTR MaLR -8 580 61 721 179 12 0 chr12 122038117 122038279 -22244210 + CT-rich Low_complexity Low_complexity 1 164 0 357 24 0 0 chr12 122038342 122038384 -22244105 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 212 365 125 0 chr12 122038384 122038592 -22243897 - L2 LINE L2 -15 3298 3065 653 281 21 47 chr12 122038605 122038982 -22243507 - MLT1H LTR MaLR -17 392 60 186 43 0 0 chr12 122038986 122039009 -22243480 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 829 150 0 0 chr12 122039013 122039133 -22243356 + FLAM_A SINE Alu 2 121 -12 3781 77 2 4 chr12 122039494 122039990 -22242499 + THE1B-int LTR MaLR 1086 1580 0 2250 136 48 20 chr12 122039990 122040343 -22242146 + THE1B LTR MaLR 2 364 0 1298 122 51 0 chr12 122040346 122040543 -22241946 - AluSx SINE Alu -105 207 1 572 281 38 16 chr12 122040700 122040885 -22241604 - MIR SINE MIR -21 241 53 271 308 13 0 chr12 122041871 122041949 -22240540 + MIR SINE MIR 81 159 -103 323 201 161 57 chr12 122041972 122042258 -22240231 + LTR33A LTR ERVL 9 361 -162 261 283 9 75 chr12 122042349 122042455 -22240034 + MIR SINE MIR 159 257 -5 365 330 124 16 chr12 122042474 122042659 -22239830 - MIR SINE MIR -11 251 47 409 339 17 16 chr12 122042730 122042900 -22239589 - MIR SINE MIR -62 146 16 1976 121 0 0 chr12 122043265 122043537 -22238952 - AluSx SINE Alu -22 290 19 427 250 92 13 chr12 122043580 122043732 -22238757 + MIR SINE MIR 24 187 -75 262 306 23 38 chr12 122043893 122044070 -22238419 + MIR SINE MIR 24 192 -63 268 256 73 0 chr12 122044180 122044262 -22238227 - MIR SINE MIR -96 166 79 744 200 123 0 chr12 122044505 122044675 -22237814 - MER3 DNA MER1_type -2 207 17 880 213 165 5 chr12 122044696 122044884 -22237605 - MER20 DNA MER1_type -1 218 1 216 174 58 43 chr12 122044918 122044987 -22237502 + L3b LINE CR1 1315 1384 -199 1544 151 41 63 chr12 122044993 122045312 -22237177 + AluJo SINE Alu 1 312 0 669 284 5 25 chr12 122045328 122045532 -22236957 + MIR SINE MIR 11 210 -52 508 319 21 21 chr12 122046243 122046431 -22236058 - L2 LINE L2 -1 3312 3125 1530 132 59 193 chr12 122046436 122046928 -22235561 - MSTB LTR MaLR 0 426 1 2101 116 14 0 chr12 122047077 122047370 -22235119 + AluSx SINE Alu 2 298 -14 245 266 18 53 chr12 122047386 122047454 -22235035 - L2 LINE L2 -298 2974 2910 1695 221 37 74 chr12 122047454 122047939 -22234550 + MLT1C LTR MaLR 1 467 0 245 266 18 53 chr12 122047939 122047983 -22234506 - L2 LINE L2 -362 2910 2866 795 160 8 8 chr12 122048001 122048126 -22234363 + FLAM_A SINE Alu 1 125 -8 1708 190 100 11 chr12 122048197 122048457 -22234032 + MLT1F LTR MaLR 130 436 -106 2214 91 0 17 chr12 122048457 122048755 -22233734 - AluSc SINE Alu -16 293 1 1708 190 100 11 chr12 122048755 122048873 -22233616 + MLT1F LTR MaLR 436 542 0 215 292 14 28 chr12 122048879 122048951 -22233538 - MIR SINE MIR -122 86 16 2221 184 107 30 chr12 122049420 122049914 -22232575 - MLT1F LTR MaLR 0 542 11 606 296 79 9 chr12 122050165 122050381 -22232108 + MIR SINE MIR 32 262 0 232 398 8 16 chr12 122050468 122050596 -22231893 + L2 LINE L2 2924 3050 -222 438 266 162 7 chr12 122050716 122050870 -22231619 - MIR SINE MIR -79 183 6 911 217 33 5 chr12 122051031 122051215 -22231274 + MER5A DNA MER1_type 1 189 0 324 158 0 0 chr12 122051701 122051758 -22230731 + CT-rich Low_complexity Low_complexity 4 60 0 215 334 50 19 chr12 122051802 122051955 -22230534 - MIR3 SINE MIR -32 176 54 1934 90 0 4 chr12 122051962 122052217 -22230272 + AluSq SINE Alu 1 254 -59 1113 43 0 7 chr12 122052329 122052643 -22229846 + AluY SINE Alu 141 453 0 500 277 30 18 chr12 122053291 122053457 -22229032 + MIR SINE MIR 47 214 -48 288 352 0 0 chr12 122053471 122053559 -22228930 - L2 LINE L2 0 3313 3226 806 212 22 16 chr12 122053876 122054060 -22228429 + MER5A DNA MER1_type 3 187 -2 2001 102 36 10 chr12 122054065 122054369 -22228120 + AluSx SINE Alu 1 312 0 512 309 36 0 chr12 122054549 122054714 -22227775 + MER5B DNA MER1_type 8 178 0 247 289 0 67 chr12 122054855 122054959 -22227530 - MER5A DNA MER1_type -26 163 67 1604 163 44 7 chr12 122054959 122055253 -22227236 - AluJb SINE Alu -5 307 3 293 287 0 9 chr12 122055590 122055698 -22226791 + L1MEc LINE L1 11 117 -6279 5202 121 11 6 chr12 122055724 122056550 -22225939 - L1PA13 LINE L1 -7 6156 5327 197 32 0 32 chr12 122056551 122056582 -22225907 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2017 110 0 3 chr12 122056586 122056868 -22225621 - AluSq SINE Alu -31 282 2 324 191 37 94 chr12 122056871 122056979 -22225510 - L1MCa LINE L1 -1339 6983 1983 655 144 23 61 chr12 122056982 122057114 -22225375 - FLAM_A SINE Alu -6 127 1 313 28 0 0 chr12 122057129 122057165 -22225324 - U2 snRNA snRNA -152 36 1 822 43 0 60 chr12 122057189 122057306 -22225183 - FLAM_C SINE Alu -32 111 2 261 268 84 7 chr12 122057311 122057453 -22225036 - MIR3 SINE MIR -53 155 3 24 67 0 0 chr12 122057526 122057571 -22224918 + GC_rich Low_complexity Low_complexity 1 45 0 189 195 0 0 chr12 122058514 122058555 -22223934 + (CA)n Simple_repeat Simple_repeat 2 42 0 241 133 0 22 chr12 122058555 122058600 -22223889 + MER69 DNA AcHobo 1984 2027 -499 1171 92 6 30 chr12 122058707 122058871 -22223618 - MER49 LTR ERV1 -41 882 723 1494 79 5 37 chr12 122058874 122059089 -22223400 - AluSx SINE Alu -104 208 1 249 106 0 0 chr12 122059089 122059136 -22223353 - L1P LINE L1 -837 5331 5285 1516 266 101 27 chr12 122059136 122059772 -22222717 + L1MEc LINE L1 106 788 -5608 * 2058 221 53 44 chr12 122059766 122059878 -22222611 + L1ME1 LINE L1 5569 5679 -487 1986 97 14 21 chr12 122059878 122060196 -22222293 - AluSq SINE Alu 0 316 1 2058 221 53 44 chr12 122060196 122060670 -22221819 + L1ME1 LINE L1 5679 6161 -5 712 250 78 16 chr12 122060679 122060935 -22221554 + L1ME4a LINE L1 5600 5871 -250 545 289 34 28 chr12 122060937 122061190 -22221299 + MIR SINE MIR 10 261 -1 346 310 28 7 chr12 122061235 122061380 -22221109 + L1ME4a LINE L1 5968 6115 -6 1721 130 33 39 chr12 122061549 122061895 -22220594 + AluSx SINE Alu 5 312 0 704 283 30 8 chr12 122062288 122062525 -22219964 - MIR SINE MIR -20 242 1 1917 150 0 0 chr12 122063481 122063781 -22218708 + AluJb SINE Alu 1 300 -12 272 180 33 0 chr12 122064035 122064096 -22218393 + MER116 DNA Mariner 13 75 -5 197 247 31 72 chr12 122065238 122065335 -22217154 + MIR SINE MIR 170 262 0 709 250 161 0 chr12 122065375 122065555 -22216934 - MIR SINE MIR -1 261 53 273 175 32 32 chr12 122066065 122066128 -22216361 - U7 snRNA snRNA 0 63 1 351 252 7 13 chr12 122066412 122066563 -22215926 + CT-rich Low_complexity Low_complexity 1 150 0 517 308 76 27 chr12 122066797 122067021 -22215468 + MIR SINE MIR 18 252 -10 279 93 0 0 chr12 122067355 122067398 -22215091 + (TG)n Simple_repeat Simple_repeat 1 43 0 415 286 0 50 chr12 122067711 122067830 -22214659 + L2 LINE L2 3191 3303 -10 223 245 0 0 chr12 122068222 122068271 -22214218 + MIR SINE MIR 100 148 -114 1820 118 33 52 chr12 122068967 122069273 -22213216 - AluSx SINE Alu -12 300 1 288 0 0 0 chr12 122070595 122070627 -22211862 + (CTG)n Simple_repeat Simple_repeat 1 32 0 452 299 108 17 chr12 122070642 122070873 -22211616 - MIR SINE MIR -1 261 10 297 109 0 0 chr12 122070975 122071021 -22211468 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 733 235 99 102 chr12 122071134 122071466 -22211023 + MLT1K LTR MaLR 17 347 -241 681 160 0 32 chr12 122071488 122071613 -22210876 - FLAM_C SINE Alu 0 143 23 294 169 0 77 chr12 122071694 122071759 -22210730 + MLT1K LTR MaLR 448 507 -81 2064 95 0 3 chr12 122072967 122073252 -22209237 + AluSc SINE Alu 1 284 -25 242 239 65 13 chr12 122074001 122074156 -22208333 + L1MDa LINE L1 2473 2635 -3905 1783 239 52 55 chr12 122074396 122074996 -22207493 + MLT1E2 LTR MaLR 35 626 0 246 344 44 28 chr12 122074999 122075179 -22207310 - L3 LINE CR1 -181 1396 1214 285 332 57 37 chr12 122075297 122075584 -22206905 + L2 LINE L2 2712 3037 -235 231 222 44 0 chr12 122075620 122075665 -22206824 + L2 LINE L2 3264 3310 -3 850 298 30 54 chr12 122075686 122076022 -22206467 - MLT1I LTR MaLR -81 328 1 407 329 148 25 chr12 122076030 122076307 -22206182 + L2 LINE L2 3003 3313 0 251 267 183 30 chr12 122076512 122076643 -22205846 + MIR3 SINE MIR 32 182 -26 355 293 115 13 chr12 122076714 122076871 -22205618 - MIR SINE MIR -78 184 12 877 278 44 32 chr12 122076907 122077159 -22205330 + MIR SINE MIR 8 262 0 540 222 38 24 chr12 122077213 122077365 -22205124 - L1ME2 LINE L1 -176 6002 5826 2324 135 92 0 chr12 122077365 122077757 -22204732 + MSTA LTR MaLR 1 428 0 540 222 38 24 chr12 122077757 122077842 -22204647 - L1ME2 LINE L1 -352 5826 5744 337 211 57 8 chr12 122077842 122077912 -22204577 + (TTATA)n Simple_repeat Simple_repeat 5 85 -48 2032 124 81 35 chr12 122077912 122078260 -22204229 - THE1B LTR MaLR 0 364 1 337 211 57 8 chr12 122078260 122078312 -22204177 + (TTATA)n Simple_repeat Simple_repeat 85 133 0 416 279 35 8 chr12 122078317 122078499 -22203990 - L1M4 LINE L1 -383 5791 5606 355 243 165 45 chr12 122078503 122078746 -22203743 - MER113 DNA MER1_type? -184 337 66 312 197 0 170 chr12 122078746 122078893 -22203596 + L1ME1 LINE L1 4877 4998 -1148 1536 154 9 66 chr12 122078893 122079212 -22203277 + AluJb SINE Alu 1 301 -11 8176 151 20 21 chr12 122079212 122079516 -22202973 + L1MC3 LINE L1 6307 6610 -1175 1738 154 0 51 chr12 122079516 122079827 -22202662 + AluJb SINE Alu 3 297 -15 8176 151 20 21 chr12 122079827 122080063 -22202426 + L1MC3 LINE L1 6610 6845 -940 432 51 0 0 chr12 122080063 122080122 -22202367 + (CA)n Simple_repeat Simple_repeat 2 60 0 8176 151 20 21 chr12 122080122 122080404 -22202085 + L1MC3 LINE L1 6845 7126 -659 1574 200 0 13 chr12 122080404 122080714 -22201775 - AluJo SINE Alu -6 306 1 8176 151 20 21 chr12 122080714 122081369 -22201120 + L1MC3 LINE L1 7126 7785 0 330 170 0 60 chr12 122081382 122081470 -22201019 + L1ME1 LINE L1 5742 5825 -339 1642 161 3 18 chr12 122081470 122081755 -22200734 + AluJo SINE Alu 1 281 -31 330 170 0 60 chr12 122081755 122081766 -22200723 + L1ME1 LINE L1 5825 5835 -329 26 0 0 0 chr12 122081766 122081792 -22200697 + AT_rich Low_complexity Low_complexity 1 26 0 941 234 38 69 chr12 122081793 122082171 -22200318 + L1ME1 LINE L1 5808 6333 -1 1359 124 10 0 chr12 122082644 122082900 -22199589 - AluJb SINE Alu 0 344 87 285 166 13 13 chr12 122082900 122082960 -22199529 - Alu SINE Alu -258 44 1 * 304 254 132 48 chr12 122082960 122083181 -22199308 - MARNA DNA Mariner -49 537 298 460 248 33 41 chr12 122083235 122083356 -22199133 + L2 LINE L2 3153 3272 0 874 268 41 57 chr12 122083365 122083905 -22198584 + L2 LINE L2 2520 3048 -224 1967 170 53 23 chr12 122083979 122084378 -22198111 + L1MB5 LINE L1 5739 6149 -25 472 147 46 64 chr12 122084387 122084496 -22197993 - MER96B DNA MER1_type? -132 285 179 399 263 167 59 chr12 122084497 122084628 -22197861 + L2 LINE L2 3015 3131 -182 1883 126 13 17 chr12 122084628 122084929 -22197560 - AluSx SINE Alu -12 300 1 399 263 167 59 chr12 122084929 122085067 -22197422 + L2 LINE L2 3131 3313 0 282 95 0 0 chr12 122085069 122085111 -22197378 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 261 299 28 18 chr12 122085847 122085970 -22196519 + MIR SINE MIR 70 196 -12 * 382 188 0 0 chr12 122085959 122086023 -22196466 + MIR SINE MIR 105 168 -94 485 255 97 38 chr12 122086036 122086326 -22196163 - L1MC4 LINE L1 0 8042 7736 376 179 48 0 chr12 122086328 122086412 -22196077 + MIR SINE MIR 164 251 -11 1757 173 3 3 chr12 122086413 122086713 -22195776 - AluJb SINE Alu -12 300 1 204 40 0 0 chr12 122087557 122087582 -22194907 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 404 224 88 48 chr12 122087584 122087709 -22194780 - L2 LINE L2 -15 3298 3169 270 0 0 0 chr12 122087710 122087740 -22194749 + (TAA)n Simple_repeat Simple_repeat 2 31 0 811 213 20 0 chr12 122087744 122087920 -22194569 - MIR SINE MIR -10 252 74 467 274 141 29 chr12 122087931 122088172 -22194317 - L2 LINE L2 -168 3145 2878 5423 97 18 3 chr12 122088871 122089231 -22193258 - L1PB1 LINE L1 0 6151 5798 546 16 0 0 chr12 122089231 122089294 -22193195 + (TA)n Simple_repeat Simple_repeat 1 63 0 5423 97 18 3 chr12 122089294 122089700 -22192789 - L1PB1 LINE L1 -353 5798 5373 1764 127 27 33 chr12 122090018 122090318 -22192171 + AluSx SINE Alu 1 298 -14 1036 175 52 22 chr12 122090383 122090651 -22191838 - MER33 DNA MER1_type -6 318 43 459 149 22 30 chr12 122090711 122090845 -22191644 + CT-rich Low_complexity Low_complexity 3 135 0 226 306 0 16 chr12 122091054 122091068 -22191421 - L2 LINE L2 -3 3269 3256 1858 161 0 7 chr12 122091068 122091372 -22191117 + AluJo SINE Alu 1 302 -10 226 306 0 16 chr12 122091372 122091419 -22191070 - L2 LINE L2 -16 3256 3209 534 262 148 33 chr12 122091497 122091707 -22190782 + MIR SINE MIR 25 258 -4 1382 181 9 83 chr12 122091741 122092077 -22190412 + AluJo SINE Alu 1 311 -1 249 292 0 0 chr12 122092331 122092403 -22190086 - L1MC/D LINE L1 -2286 5522 5451 1775 201 102 3 chr12 122092999 122093391 -22189098 - MER63B DNA MER1_type -5 431 1 189 278 0 0 chr12 122094169 122094205 -22188284 - MIR SINE MIR -110 152 117 198 167 0 0 chr12 122095333 122095369 -22187120 + C-rich Low_complexity Low_complexity 1 36 0 240 130 0 0 chr12 122096080 122096126 -22186363 + (CA)n Simple_repeat Simple_repeat 2 47 0 269 343 10 0 chr12 122096359 122096458 -22186031 + L2 LINE L2 2896 2995 -277 191 287 49 90 chr12 122096661 122096783 -22185706 + L2 LINE L2 3158 3274 -39 255 93 0 0 chr12 122096847 122096890 -22185599 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 799 152 49 122 chr12 122096909 122097172 -22185317 - ORSL DNA AcHobo -2 273 30 458 238 10 10 chr12 122097502 122097603 -22184886 - FLAM_C SINE Alu -31 112 12 181 277 96 53 chr12 122097618 122097712 -22184777 - MIR SINE MIR -69 193 96 1989 146 0 0 chr12 122097852 122098161 -22184328 + AluSx SINE Alu 1 309 -3 495 309 97 39 chr12 122098311 122098808 -22183681 - L2 LINE L2 0 3313 2791 827 182 19 65 chr12 122098976 122099283 -22183206 + AluSx SINE Alu 11 303 -9 * 1126 193 0 44 chr12 122099281 122099530 -22182959 + AluJo SINE Alu 57 294 -18 343 241 35 0 chr12 122099766 122099853 -22182636 + MLT1I LTR MaLR 1 90 -319 2563 36 3 0 chr12 122100021 122100329 -22182160 + AluY SINE Alu 1 309 -2 299 146 0 0 chr12 122100355 122100403 -22182086 + MLT1I LTR MaLR 362 409 0 742 220 0 0 chr12 122100875 122101007 -22181482 + FLAM_A SINE Alu 1 132 -1 207 0 0 0 chr12 122101220 122101243 -22181246 + (T)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chr12 122101432 122101458 -22181031 + AT_rich Low_complexity Low_complexity 1 26 0 527 276 6 11 chr12 122102324 122102478 -22180011 + CT-rich Low_complexity Low_complexity 1 155 -25 1475 169 33 13 chr12 122102478 122102780 -22179709 - AluJo SINE Alu -3 309 2 527 276 6 11 chr12 122102780 122102806 -22179683 + CT-rich Low_complexity Low_complexity 155 180 0 289 225 13 66 chr12 122102820 122102971 -22179518 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 336 102 0 0 chr12 122103226 122103275 -22179214 + (CA)n Simple_repeat Simple_repeat 1 49 0 265 297 27 0 chr12 122103318 122103392 -22179097 - MIR SINE MIR -63 145 70 533 237 105 13 chr12 122103787 122103939 -22178550 - MIR SINE MIR -21 241 76 308 294 0 9 chr12 122103979 122104088 -22178401 + (TA)n Simple_repeat Simple_repeat 2 109 0 218 245 0 0 chr12 122104504 122104553 -22177936 - MIR SINE MIR -64 198 150 278 286 31 20 chr12 122104656 122104754 -22177735 + MIR SINE MIR 92 190 -72 1237 58 23 0 chr12 122105721 122105894 -22176595 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 479 111 0 12 chr12 122105894 122105975 -22176514 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 623 173 0 0 chr12 122105988 122106098 -22176391 - FLAM_A SINE Alu -1 141 32 788 171 16 6 chr12 122106135 122106459 -22176030 + CT-rich Low_complexity Low_complexity 1 327 0 689 245 112 0 chr12 122106499 122106695 -22175794 + MIR SINE MIR 45 262 0 226 339 87 9 chr12 122107044 122107159 -22175330 + MIR3 SINE MIR 9 132 -76 610 248 287 15 chr12 122107223 122107771 -22174718 + L2 LINE L2 2620 3304 -9 1718 142 3 113 chr12 122108114 122108451 -22174038 - AluJo SINE Alu -2 300 1 800 191 0 0 chr12 122108455 122108586 -22173903 - FLAM_C SINE Alu -1 132 2 593 335 40 13 chr12 122108896 122109123 -22173366 - MIR SINE MIR -7 255 23 356 246 63 26 chr12 122109862 122110007 -22172482 - MIR SINE MIR -63 145 35 556 246 95 8 chr12 122110048 122110278 -22172211 + MIR SINE MIR 3 262 0 195 42 0 0 chr12 122110287 122110311 -22172178 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1648 169 0 15 chr12 122110311 122110577 -22171912 - AluJo SINE Alu -30 282 21 219 213 85 0 chr12 122110932 122110979 -22171510 - MER91C DNA MER1_type -32 108 58 667 279 42 38 chr12 122111016 122111253 -22171236 - MIR SINE MIR -23 239 2 2079 136 13 0 chr12 122111348 122111650 -22170839 + AluSq SINE Alu 1 306 -7 221 284 14 40 chr12 122111892 122111966 -22170523 + L2 LINE L2 3181 3252 -20 2294 112 7 0 chr12 122112121 122112416 -22170073 + AluSx SINE Alu 2 298 -14 343 219 116 103 chr12 122112624 122112690 -22169799 - MIR3 SINE MIR -56 152 88 631 174 18 0 chr12 122112690 122112799 -22169690 - MER81 DNA DNA 0 114 4 343 219 116 103 chr12 122112799 122112878 -22169611 - MIR3 SINE MIR -120 88 5 874 200 60 5 chr12 122113504 122113704 -22168785 + MER20 DNA MER1_type 1 211 -8 388 196 224 9 chr12 122114252 122114359 -22168130 - MER5A DNA MER1_type -7 182 53 861 282 41 0 chr12 122115419 122115639 -22166850 + MIR SINE MIR 22 250 -12 1108 207 18 9 chr12 122116142 122116359 -22166130 - MER20 DNA MER1_type 0 219 1 290 305 182 35 chr12 122116635 122116838 -22165651 + MIR SINE MIR 14 246 -16 311 285 24 32 chr12 122116897 122117020 -22165469 + L2 LINE L2 3140 3261 -52 1795 199 162 33 chr12 122117218 122117730 -22164759 - MLT1E LTR MaLR -2 591 14 1694 106 13 0 chr12 122117730 122117957 -22164532 + MER30 DNA MER1_type 1 230 0 333 261 0 43 chr12 122117977 122118031 -22164458 - MIR SINE MIR -51 211 161 2286 120 3 0 chr12 122118031 122118339 -22164150 - AluSx SINE Alu -3 309 1 333 261 0 43 chr12 122118339 122118376 -22164113 - MIR SINE MIR -101 161 124 533 262 41 52 chr12 122118868 122119101 -22163388 - MLT1H1 LTR MaLR -284 271 24 764 280 170 40 chr12 122119124 122119578 -22162911 + MER68 LTR ERV1 50 562 0 435 252 105 0 chr12 122119878 122120021 -22162468 + L1ME4a LINE L1 5693 5850 -271 198 0 0 0 chr12 122120111 122120133 -22162356 + (TTAA)n Simple_repeat Simple_repeat 2 23 0 321 198 105 58 chr12 122120198 122120284 -22162205 - MIR SINE MIR -2 260 171 1523 195 89 12 chr12 122120284 122120622 -22161867 + MLT1H LTR MaLR 1 364 -185 270 59 47 0 chr12 122120733 122120769 -22161720 + MLT1H LTR MaLR 529 549 0 567 295 29 23 chr12 122120769 122120942 -22161547 - MIR SINE MIR -87 175 2 300 224 30 0 chr12 122120945 122121012 -22161477 + L2 LINE L2 3200 3268 -4 898 251 53 75 chr12 122122144 122122558 -22159931 - MLT1I LTR MaLR 0 409 5 538 239 90 0 chr12 122122769 122122903 -22159586 - MIR SINE MIR -48 214 69 828 197 83 5 chr12 122123456 122123649 -22158840 + MER3 DNA MER1_type 1 208 -1 2338 109 0 3 chr12 122123705 122124016 -22158473 - AluSx SINE Alu -2 310 1 1372 215 34 39 chr12 122124027 122124464 -22158025 - MER113 DNA MER1_type? -75 446 12 1333 181 0 11 chr12 122124483 122124748 -22157741 - L1MD3 LINE L1 0 7995 7734 438 240 0 29 chr12 122125334 122125438 -22157051 - L3 LINE CR1 -87 1490 1390 354 371 16 39 chr12 122125583 122125649 -22156840 - L3 LINE CR1 -475 1102 1036 787 194 22 78 chr12 122125649 122125881 -22156608 + MER20 DNA MER1_type 1 219 0 354 371 16 39 chr12 122125881 122125901 -22156588 - L3 LINE CR1 -541 1036 1017 1961 158 7 3 chr12 122125901 122126199 -22156290 - AluJb SINE Alu -13 299 1 354 371 16 39 chr12 122126199 122126367 -22156122 - L3 LINE CR1 -560 1017 853 181 294 43 43 chr12 122126402 122126494 -22155995 + L2 LINE L2 2531 2622 -692 607 287 15 41 chr12 122126554 122126749 -22155740 - MIR SINE MIR -56 206 17 292 222 22 67 chr12 122126833 122126923 -22155566 - L2 LINE L2 -564 2750 2665 286 301 39 93 chr12 122127101 122127433 -22155056 + L2 LINE L2 2967 3280 -33 22 0 0 0 chr12 122127433 122127455 -22155034 + AT_rich Low_complexity Low_complexity 1 22 0 339 273 62 62 chr12 122127455 122127547 -22154942 - MIR SINE MIR -95 167 73 537 16 0 0 chr12 122127547 122127609 -22154880 + (TG)n Simple_repeat Simple_repeat 2 63 0 339 273 62 62 chr12 122127609 122127644 -22154845 - MIR SINE MIR -188 74 40 231 152 0 0 chr12 122128536 122128582 -22153907 + (CA)n Simple_repeat Simple_repeat 2 47 0 208 135 19 19 chr12 122129277 122129329 -22153160 + (CA)n Simple_repeat Simple_repeat 1 52 0 206 335 106 37 chr12 122130099 122130260 -22152229 + MIR SINE MIR 22 193 -69 235 306 127 37 chr12 122130602 122130736 -22151753 - L2 LINE L2 -159 3113 2968 655 235 77 0 chr12 122130890 122131073 -22151416 + MIR SINE MIR 64 260 -2 364 361 6 11 chr12 122131276 122131459 -22151030 + L2 LINE L2 2917 3098 -174 200 155 17 69 chr12 122131800 122131858 -22150631 + L2 LINE L2 3030 3084 -188 476 311 45 11 chr12 122132016 122132193 -22150296 + MIR SINE MIR 32 214 -48 419 221 107 23 chr12 122132331 122132462 -22150027 + MIR SINE MIR 74 215 -47 725 189 208 5 chr12 122132496 122132708 -22149781 - MIR SINE MIR 0 262 8 2199 106 0 0 chr12 122132829 122133156 -22149333 + AluSx SINE Alu 1 327 0 673 264 10 16 chr12 122133265 122133458 -22149031 + MIR SINE MIR 3 194 -68 225 298 32 11 chr12 122133800 122133894 -22148595 + GA-rich Low_complexity Low_complexity 2 97 0 189 245 0 0 chr12 122133961 122134010 -22148479 + (TAA)n Simple_repeat Simple_repeat 2 50 0 301 273 50 29 chr12 122134330 122134469 -22148020 - MLT1J LTR MaLR -369 142 1 512 203 164 7 chr12 122134475 122134654 -22147835 - MIR SINE MIR -2 260 45 622 250 77 39 chr12 122135333 122135541 -22146948 + MIR SINE MIR 33 248 -14 876 175 32 114 chr12 122135881 122136050 -22146439 - MER33 DNA MER1_type -2271 314 185 1937 158 16 0 chr12 122136050 122136354 -22146135 + AluJb SINE Alu 1 309 -3 876 175 32 114 chr12 122136354 122136526 -22145963 - MER33 DNA MER1_type -2400 185 1 22 0 0 0 chr12 122136570 122136592 -22145897 + AT_rich Low_complexity Low_complexity 1 22 0 2279 117 0 7 chr12 122136594 122136901 -22145588 + AluSg SINE Alu 3 307 -3 216 0 0 0 chr12 122137019 122137043 -22145446 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 207 228 0 18 chr12 122137498 122137555 -22144934 + (TA)n Simple_repeat Simple_repeat 2 57 0 735 44 0 0 chr12 122137858 122137949 -22144540 + (TTCC)n Simple_repeat Simple_repeat 4 94 0 803 176 7 7 chr12 122137977 122138119 -22144370 - FLAM_C SINE Alu -1 142 1 473 173 29 12 chr12 122138156 122138329 -22144160 + CT-rich Low_complexity Low_complexity 1 176 0 359 309 12 24 chr12 122138341 122138506 -22143983 + CT-rich Low_complexity Low_complexity 2 164 0 216 0 0 0 chr12 122138781 122138805 -22143684 + (GA)n Simple_repeat Simple_repeat 1 24 0 273 302 69 9 chr12 122139208 122139324 -22143165 + MIR SINE MIR 13 135 -127 211 304 33 33 chr12 122139731 122139823 -22142666 + L3 LINE CR1 1280 1371 -206 245 328 180 8 chr12 122139907 122140029 -22142460 + L3 LINE CR1 1391 1533 -44 * 384 217 200 8 chr12 122140026 122140146 -22142343 + MIR SINE MIR 29 171 -91 279 174 88 19 chr12 122140309 122140405 -22142084 + MIR SINE MIR 46 152 -56 542 184 10 0 chr12 122140523 122140621 -22141868 + MIR SINE MIR 45 143 -65 666 280 106 14 chr12 122140915 122141190 -22141299 + LTR16C LTR ERVL 88 387 -104 331 314 77 0 chr12 122141376 122141532 -22140957 - L2 LINE L2 -227 3045 2878 340 211 28 0 chr12 122141533 122141604 -22140885 + MIR SINE MIR 71 143 -65 984 269 95 32 chr12 122141795 122142360 -22140129 - L2 LINE L2 -89 3224 2625 487 250 47 34 chr12 122142860 122143008 -22139481 - MIR3 SINE MIR -17 191 42 1643 178 72 0 chr12 122143144 122143420 -22139069 + AluJo SINE Alu 1 296 -16 357 274 205 59 chr12 122143597 122143949 -22138540 - Charlie8 DNA MER1_type -2184 233 2 320 307 18 43 chr12 122143951 122144114 -22138375 - MIR3 SINE MIR -49 159 1 793 192 104 68 chr12 122144247 122144555 -22137934 + MER113 DNA MER1_type? 3 321 -200 2164 180 13 0 chr12 122144557 122144844 -22137645 + L1MB8 LINE L1 5605 5884 -294 2164 184 26 9 chr12 122144844 122145268 -22137221 + L1MB8 LINE L1 5745 6175 -3 2164 180 13 0 chr12 122145268 122145319 -22137170 + L1MB8 LINE L1 5884 6175 -3 756 220 0 0 chr12 122145319 122145451 -22137038 + AluJb SINE Alu 130 261 -51 420 20 0 0 chr12 122145452 122145501 -22136988 + (TAA)n Simple_repeat Simple_repeat 2 50 0 605 223 52 28 chr12 122145501 122145712 -22136777 + L1ME3 LINE L1 5941 6156 -6 587 258 13 0 chr12 122145735 122145890 -22136599 + MER113 DNA MER1_type? 331 487 -34 619 181 10 8 chr12 122145988 122146128 -22136361 - MIR SINE MIR -58 150 15 220 350 62 0 chr12 122146158 122146255 -22136234 - L3 LINE CR1 -89 1488 1386 237 211 0 33 chr12 122146596 122146667 -22135822 + MIR SINE MIR 99 166 -62 193 321 60 15 chr12 122146831 122146965 -22135524 + MIR SINE MIR 51 190 -72 589 169 196 14 chr12 122146987 122147135 -22135354 - MER5A DNA MER1_type -6 183 9 194 212 0 0 chr12 122147149 122147182 -22135307 + MIR SINE MIR 218 250 -12 234 0 0 0 chr12 122147845 122147871 -22134618 + (CAG)n Simple_repeat Simple_repeat 3 28 0 370 270 123 31 chr12 122148062 122148225 -22134264 + MIR SINE MIR 29 206 -56 321 234 65 110 chr12 122148419 122148573 -22133916 - MIR SINE MIR -70 192 46 579 283 133 0 chr12 122148628 122148808 -22133681 + MIR SINE MIR 47 250 -12 528 242 23 62 chr12 122149577 122149766 -22132723 + MIR SINE MIR 20 203 -59 1380 118 11 0 chr12 122149766 122149952 -22132537 + AluSg/x SINE Alu 85 272 -40 180 0 0 0 chr12 122149952 122149972 -22132517 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 269 26 0 26 chr12 122149971 122150010 -22132479 + (CA)n Simple_repeat Simple_repeat 1 38 0 233 328 129 0 chr12 122150052 122150168 -22132321 + MIR SINE MIR 63 193 -69 1476 132 0 41 chr12 122150250 122150492 -22131997 + AluJo SINE Alu 76 307 -5 362 202 168 0 chr12 122150532 122150583 -22131906 - MER3 DNA MER1_type -1 208 167 2310 129 0 0 chr12 122150583 122150894 -22131595 + AluSx SINE Alu 1 311 -1 362 202 168 0 chr12 122150894 122150961 -22131528 - MER3 DNA MER1_type -42 167 70 286 281 302 0 chr12 122150971 122151110 -22131379 - MER5A DNA MER1_type 0 189 9 1157 203 45 19 chr12 122151126 122151436 -22131053 + MER33 DNA MER1_type 1 318 -6 2018 111 27 27 chr12 122151501 122151799 -22130690 - AluSx SINE Alu -14 298 1 748 285 102 32 chr12 122152042 122152445 -22130044 + MLT1K LTR MaLR 69 499 -89 1502 235 86 79 chr12 122152591 122153162 -22129327 + MLT1G1 LTR MaLR 13 587 -8 295 258 0 16 chr12 122153371 122153480 -22129009 - MIR SINE MIR -61 147 47 444 79 53 0 chr12 122153561 122153637 -22128852 - L1MB5 LINE L1 0 6174 6095 2350 160 19 9 chr12 122153641 122154073 -22128416 - L1MB5 LINE L1 -172 6002 5567 591 222 243 30 chr12 122154185 122154518 -22127971 - L2 LINE L2 0 3313 2910 181 111 0 0 chr12 122154570 122154597 -22127892 + MIR SINE MIR 118 144 -118 2925 148 43 13 chr12 122154605 122155161 -22127328 + L1MA4 LINE L1 5728 6300 0 330 279 11 0 chr12 122155226 122155323 -22127166 - MIR SINE MIR -70 138 41 665 279 47 34 chr12 122155599 122155832 -22126657 - MIR SINE MIR -25 237 2 383 284 19 7 chr12 122156306 122156461 -22126028 + (TG)n Simple_repeat Simple_repeat 1 157 0 445 179 168 0 chr12 122156757 122156852 -22125637 - MIR SINE MIR -33 229 119 502 197 51 29 chr12 122156888 122157025 -22125464 - MER58B DNA MER1_type -1 340 201 508 304 150 49 chr12 122157124 122157450 -22125039 - L2 LINE L2 0 3272 2914 636 195 8 8 chr12 122157799 122157922 -22124567 + L2 LINE L2 3182 3304 -9 324 234 170 43 chr12 122158092 122158233 -22124256 + L2 LINE L2 3153 3311 -2 712 247 134 34 chr12 122159145 122159473 -22123016 - LTR16A1 LTR ERVL 0 457 97 229 191 0 0 chr12 122160172 122160214 -22122275 + MIR SINE MIR 106 147 -115 329 214 51 41 chr12 122160338 122160436 -22122053 - MIR3 SINE MIR -17 191 93 318 274 125 77 chr12 122160459 122160627 -22121862 + MIR3 SINE MIR 12 187 -21 183 238 0 24 chr12 122160783 122160825 -22121664 + MIR SINE MIR 32 72 -136 427 318 144 5 chr12 122160840 122161041 -22121448 - MIR SINE MIR -20 242 14 1145 233 26 0 chr12 122161297 122161568 -22120921 + LTR16A1 LTR ERVL 168 445 -12 262 244 77 26 chr12 122161729 122161807 -22120682 + L2 LINE L2 3227 3308 -5 525 313 67 10 chr12 122162225 122162420 -22120069 - MIR SINE MIR -28 234 29 31 0 0 24 chr12 122162483 122162500 -22119989 + AT_rich Low_complexity Low_complexity 1 17 -24 2228 90 9 27 chr12 122162500 122162648 -22119841 + L1MA2 LINE L1 5977 6126 -178 2252 100 10 3 chr12 122162648 122162947 -22119542 - AluSx SINE Alu -11 301 1 2228 90 9 27 chr12 122162947 122163132 -22119357 + L1MA2 LINE L1 6126 6304 0 31 0 0 24 chr12 122163132 122163156 -22119333 + AT_rich Low_complexity Low_complexity 17 41 0 374 268 169 54 chr12 122163365 122163660 -22118829 + MLT1H LTR MaLR 108 436 -113 2532 96 34 6 chr12 122163664 122164018 -22118471 + THE1B LTR MaLR 1 364 0 1841 175 14 0 chr12 122164038 122164330 -22118159 - AluJo SINE Alu -15 297 2 467 267 107 15 chr12 122164700 122164906 -22117583 - MIR SINE MIR -21 241 17 339 264 178 39 chr12 122165018 122165173 -22117316 - MIR SINE MIR -62 200 28 360 160 32 75 chr12 122165193 122165287 -22117202 - L1MC4 LINE L1 -1339 6703 6614 205 105 26 26 chr12 122165289 122165327 -22117162 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 382 152 51 42 chr12 122165331 122165448 -22117041 - L1MC4 LINE L1 -1339 6983 1996 208 73 0 49 chr12 122165450 122165491 -22116998 + (TA)n Simple_repeat Simple_repeat 1 39 0 1036 114 11 0 chr12 122165669 122165809 -22116680 + (TTCC)n Simple_repeat Simple_repeat 1 319 0 1036 114 11 0 chr12 122165809 122165985 -22116504 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 364 324 34 57 chr12 122166025 122166201 -22116288 - L2 LINE L2 -4 3268 3097 * 586 289 90 9 chr12 122166200 122166411 -22116078 + MIR SINE MIR 14 241 -21 385 250 242 0 chr12 122167091 122167219 -22115270 + MIR SINE MIR 2 160 -102 632 295 37 16 chr12 122167219 122167409 -22115080 + MIR SINE MIR 63 256 -6 205 316 0 0 chr12 122167423 122167480 -22115009 + CT-rich Low_complexity Low_complexity 4 60 0 212 286 0 0 chr12 122167482 122167545 -22114944 - L2 LINE L2 -1 3271 3209 2489 76 0 3 chr12 122167874 122168176 -22114313 - AluSq SINE Alu -12 301 1 180 111 0 0 chr12 122168592 122168619 -22113870 + (T)n Simple_repeat Simple_repeat 1 27 0 427 265 92 13 chr12 122169740 122169905 -22112584 + L1MC4a LINE L1 5712 5771 -531 2214 122 0 0 chr12 122169905 122170199 -22112290 + AluSg SINE Alu 1 294 -16 427 265 92 13 chr12 122170199 122170259 -22112230 + L1MC4a LINE L1 5771 5825 -477 794 217 44 92 chr12 122170883 122171243 -22111246 - L1ME2 LINE L1 -1 6163 5821 5776 117 24 48 chr12 122171256 122171809 -22110680 + L1ME2 LINE L1 5288 5806 -497 2452 92 0 13 chr12 122171809 122172124 -22110365 + AluSx SINE Alu 1 311 -1 5776 117 24 48 chr12 122172124 122172609 -22109880 + L1MA4A LINE L1 5806 6301 -2 1549 180 8 140 chr12 122172633 122172758 -22109731 - L1ME2 LINE L1 -342 5822 5682 2056 153 0 0 chr12 122172758 122173053 -22109436 - AluSx SINE Alu -17 295 1 1549 180 8 140 chr12 122173053 122173427 -22109062 - L1ME2 LINE L1 -482 5682 5389 331 250 80 0 chr12 122173427 122173515 -22108974 - MIR SINE MIR -119 143 49 1815 176 86 0 chr12 122173516 122173852 -22108637 + MLT1A1 LTR MaLR 1 365 0 1463 244 107 7 chr12 122174709 122175140 -22107349 + MLT1K LTR MaLR 3 476 0 510 287 36 31 chr12 122175238 122175433 -22107056 - L3 LINE CR1 -2 1575 1380 911 270 63 35 chr12 122175481 122176129 -22106360 + L2 LINE L2 2639 3308 -5 922 246 205 29 chr12 122176714 122177152 -22105337 - L2 LINE L2 -30 3283 2691 2070 120 90 3 chr12 122177152 122177485 -22105004 - THE1B LTR MaLR 0 364 3 922 246 205 29 chr12 122177485 122177639 -22104850 - L2 LINE L2 -622 2691 2565 304 286 107 27 chr12 122177674 122177786 -22104703 - L2 LINE L2 -5 3308 3188 708 177 9 0 chr12 122177808 122177921 -22104568 - MER81 DNA DNA 0 114 1 344 283 42 33 chr12 122178000 122178120 -22104369 - MIR3 SINE MIR -44 164 44 794 161 0 39 chr12 122178311 122178441 -22104048 - FLAM_C SINE Alu -17 126 2 815 274 105 33 chr12 122178503 122179419 -22103070 + L1ME3A LINE L1 4968 5949 -221 1723 156 24 31 chr12 122179675 122179964 -22102525 + AluSx SINE Alu 1 287 -25 180 0 0 0 chr12 122179964 122179984 -22102505 + (TA)n Simple_repeat Simple_repeat 2 21 0 289 250 12 71 chr12 122180030 122180114 -22102375 - L2 LINE L2 0 3313 3235 406 229 179 94 chr12 122180134 122180185 -22102304 - MIR SINE MIR -13 249 204 2449 94 0 0 chr12 122180185 122180492 -22101997 - AluSg SINE Alu -3 307 1 406 229 179 94 chr12 122180492 122180625 -22101864 - MIR SINE MIR -58 204 40 1889 207 119 37 chr12 122180625 122181172 -22101317 + MLT1G1 LTR MaLR 1 592 -3 406 229 179 94 chr12 122181172 122181209 -22101280 - MIR SINE MIR -222 40 8 276 326 78 33 chr12 122181349 122181595 -22100894 - L2 LINE L2 -211 3061 2789 194 312 65 0 chr12 122181764 122181857 -22100632 + MIR SINE MIR 33 131 -77 765 206 0 0 chr12 122182243 122182369 -22100120 - AluJb SINE Alu -68 244 119 567 62 0 0 chr12 122182370 122182450 -22100039 + (GA)n Simple_repeat Simple_repeat 2 81 0 202 222 205 53 chr12 122183448 122183619 -22098870 - L2 LINE L2 -190 3082 2886 493 197 157 7 chr12 122183678 122183825 -22098664 - MIR SINE MIR -18 244 76 1784 162 36 17 chr12 122183845 122184147 -22098342 - AluJo SINE Alu -4 308 1 324 229 0 0 chr12 122184556 122184639 -22097850 + GA-rich Low_complexity Low_complexity 1 83 0 235 218 55 0 chr12 122185105 122185160 -22097329 - MIR SINE MIR -39 223 166 1096 168 0 0 chr12 122185171 122185344 -22097145 - FRAM SINE Alu -3 173 1 634 271 89 23 chr12 122185368 122185582 -22096907 - MIR SINE MIR -7 255 28 309 236 28 0 chr12 122185652 122185724 -22096765 + L3b LINE CR1 1317 1390 -193 2004 117 0 0 chr12 122186150 122186407 -22096082 - AluSx SINE Alu -55 257 1 554 181 114 0 chr12 122186429 122186534 -22095955 + FRAM SINE Alu 1 117 -59 934 139 35 14 chr12 122186534 122186678 -22095811 + AluJo/FRAM SINE Alu 152 298 -14 766 219 12 12 chr12 122186686 122186850 -22095639 - AluJo SINE Alu -147 165 2 180 0 0 0 chr12 122186852 122186872 -22095617 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 989 188 0 0 chr12 122186887 122187047 -22095442 + FRAM SINE Alu 1 160 -16 990 251 141 24 chr12 122187088 122187817 -22094672 - L2 LINE L2 0 3313 2527 1633 154 79 7 chr12 122187868 122188147 -22094342 - AluSg SINE Alu -11 299 1 331 231 98 64 chr12 122188153 122188326 -22094163 - L2 LINE L2 -13 3300 3122 445 290 19 25 chr12 122188349 122188511 -22093978 - MIR3 SINE MIR -15 193 33 223 423 6 0 chr12 122189456 122189619 -22092870 + (CCCCAG)n Simple_repeat Simple_repeat 5 168 0 * 282 326 16 8 chr12 122189555 122189684 -22092805 + (CCCTAG)n Simple_repeat Simple_repeat 2 131 0 671 275 93 30 chr12 122189805 122190139 -22092350 + MLT1I LTR MaLR 55 409 0 258 229 0 0 chr12 122190267 122190315 -22092174 + L2 LINE L2 3259 3306 -7 277 245 47 47 chr12 122190438 122190544 -22091945 + MIR SINE MIR 48 153 -109 230 242 200 21 chr12 122190704 122190799 -22091690 - MIR SINE MIR -8 254 143 639 158 22 25 chr12 122190856 122191096 -22091393 + CT-rich Low_complexity Low_complexity 1 239 0 828 307 70 0 chr12 122191132 122191376 -22091113 + MIR SINE MIR 2 262 0 537 342 79 0 chr12 122191457 122191697 -22090792 - MIR SINE MIR 0 262 4 25 31 0 0 chr12 122192112 122192144 -22090345 + AT_rich Low_complexity Low_complexity 1 32 0 481 213 221 7 chr12 122192511 122192647 -22089842 - MER5A DNA MER1_type 0 189 25 507 276 76 32 chr12 122192761 122192946 -22089543 + MIR SINE MIR 53 245 -17 634 126 0 17 chr12 122192947 122193066 -22089423 + (TCCC)n Simple_repeat Simple_repeat 2 118 0 744 250 189 7 chr12 122193404 122193700 -22088789 + LTR16C LTR ERVL 142 491 0 357 24 0 0 chr12 122193813 122193855 -22088634 + (TC)n Simple_repeat Simple_repeat 2 43 0 258 32 0 0 chr12 122193854 122193885 -22088604 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 215 164 16 0 chr12 122193885 122193946 -22088543 + CT-rich Low_complexity Low_complexity 2 63 0 298 276 35 23 chr12 122194082 122194169 -22088320 - MIR SINE MIR -98 164 77 278 236 0 0 chr12 122194156 122194211 -22088278 - L2 LINE L2 -5 3267 3213 * 335 256 9 160 chr12 122194235 122194298 -22088191 - MER5A DNA MER1_type -1 188 117 1898 166 0 0 chr12 122194298 122194588 -22087901 + AluSx SINE Alu 1 290 -22 335 256 9 160 chr12 122194588 122194743 -22087746 - MER5A DNA MER1_type -72 117 3 375 272 150 0 chr12 122195135 122195282 -22087207 - MIR SINE MIR -74 188 20 376 297 109 40 chr12 122195549 122195724 -22086765 - MIR SINE MIR -73 189 3 206 140 0 40 chr12 122196083 122196133 -22086356 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 2108 104 0 24 chr12 122196210 122196533 -22085956 + AluSx SINE Alu 1 316 0 535 306 65 27 chr12 122196686 122196872 -22085617 + MER91A DNA MER1_type 4 196 0 736 122 12 41 chr12 122197258 122197430 -22085059 + (TCCA)n Simple_repeat Simple_repeat 2 168 0 2426 93 6 6 chr12 122197441 122197753 -22084736 - AluSx SINE Alu 0 312 1 414 332 69 20 chr12 122197755 122197957 -22084532 - L2 LINE L2 -92 3221 3010 491 222 17 34 chr12 122198308 122198425 -22084064 + MIR SINE MIR 32 146 -116 666 232 134 0 chr12 122198504 122198668 -22083821 - MER5A DNA MER1_type 0 189 4 188 344 16 0 chr12 122198800 122198861 -22083628 + MIR SINE MIR 195 256 -6 275 254 95 77 chr12 122199444 122199613 -22082876 - MIR SINE MIR -52 210 39 * 294 276 10 10 chr12 122199599 122199697 -22082792 - MER5A DNA MER1_type -88 101 4 243 400 9 9 chr12 122199769 122199884 -22082605 - L2 LINE L2 0 3272 3158 546 128 64 40 chr12 122200273 122200398 -22082091 + MER53 DNA DNA 2 129 -60 365 232 160 24 chr12 122200410 122200535 -22081954 + MER5B DNA MER1_type 37 178 0 1877 164 0 23 chr12 122200726 122201036 -22081453 + AluJb SINE Alu 1 303 -9 23 0 0 0 chr12 122201107 122201130 -22081359 + AT_rich Low_complexity Low_complexity 1 23 0 816 204 0 45 chr12 122201133 122201309 -22081180 - MIR SINE MIR -14 248 81 369 0 0 0 chr12 122201759 122201800 -22080689 + (TC)n Simple_repeat Simple_repeat 1 41 0 821 156 16 0 chr12 122202027 122202155 -22080334 - FLAM_C SINE Alu -2 131 2 180 77 0 0 chr12 122202159 122202185 -22080304 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 1081 239 0 0 chr12 122202267 122202489 -22080000 - MLT1D-int LTR MaLR -488 883 662 1936 216 9 67 chr12 122202556 122203098 -22079391 - MLT1D-int LTR MaLR -724 647 169 1636 190 7 0 chr12 122203098 122203377 -22079112 - AluJb SINE Alu 0 312 32 1936 216 9 67 chr12 122203377 122203533 -22078956 - MLT1D-int LTR MaLR -1202 169 5 2084 203 94 13 chr12 122203537 122204004 -22078485 - MLT1D LTR MaLR 0 505 1 295 278 62 17 chr12 122204220 122204396 -22078093 + L1ME4a LINE L1 5927 6110 -11 660 261 25 45 chr12 122205003 122205202 -22077287 + MIR SINE MIR 34 228 -34 213 108 0 0 chr12 122205209 122205246 -22077243 + (CAT)n Simple_repeat Simple_repeat 2 38 0 335 269 19 46 chr12 122205351 122205459 -22077030 + MIR SINE MIR 154 258 -4 213 158 26 0 chr12 122205477 122205515 -22076974 + GA-rich Low_complexity Low_complexity 2 40 0 248 239 26 8 chr12 122205550 122205667 -22076822 + GA-rich Low_complexity Low_complexity 2 120 0 212 333 144 23 chr12 122206586 122206718 -22075771 - L2 LINE L2 -9 3263 3116 218 336 20 67 chr12 122206746 122206895 -22075594 + MIR SINE MIR 108 249 -13 706 254 111 11 chr12 122206904 122207085 -22075404 + MIR SINE MIR 33 231 -31 1323 156 56 12 chr12 122207122 122207198 -22075291 - Tigger7 DNA MER2_type 0 2491 2420 2084 144 0 39 chr12 122207198 122207350 -22075139 + MER47A DNA MER2_type 1 157 -2166 1858 130 30 23 chr12 122207350 122207649 -22074840 + AluJo SINE Alu 1 301 -11 2084 144 0 39 chr12 122207649 122207877 -22074612 + MER47A DNA MER2_type 157 366 0 1323 156 56 12 chr12 122207877 122208050 -22074439 - Tigger7 DNA MER2_type -71 2420 2231 303 169 117 26 chr12 122208125 122208202 -22074287 + MIR SINE MIR 117 200 -62 309 53 0 0 chr12 122208209 122208247 -22074242 + LTR56 LTR ERV1 351 388 -57 1707 159 142 20 chr12 122208292 122208644 -22073845 - MSTD LTR MaLR -1 395 1 748 220 6 33 chr12 122208943 122209125 -22073364 - MLT1C LTR MaLR 0 467 298 1056 214 123 22 chr12 122209158 122209476 -22073013 - MLT1K LTR MaLR -43 545 196 382 303 34 0 chr12 122209820 122209939 -22072550 - MIR3 SINE MIR -33 175 53 234 316 0 13 chr12 122210043 122210122 -22072367 - L2 LINE L2 -222 3050 2973 256 247 26 39 chr12 122210147 122210224 -22072265 + CT-rich Low_complexity Low_complexity 3 78 0 571 188 0 0 chr12 122210484 122210601 -22071888 + L1MA9 LINE L1 6195 6311 -1 758 253 184 47 chr12 122211196 122211722 -22070767 + L2 LINE L2 2708 3311 -2 335 269 13 0 chr12 122211726 122211804 -22070685 - MIR SINE MIR -63 145 67 228 270 45 57 chr12 122211746 122211883 -22070606 + MIR SINE MIR 32 165 -62 * 215 291 0 0 chr12 122212097 122212152 -22070337 - MIR3 SINE MIR -1 207 153 188 302 9 75 chr12 122212156 122212262 -22070227 + MER5A DNA MER1_type 19 117 -72 281 308 61 37 chr12 122212271 122212485 -22070004 - LTR16B LTR ERVL -139 325 107 180 150 75 0 chr12 122212683 122212723 -22069766 - MIR3 SINE MIR -1 207 165 1080 194 24 0 chr12 122212923 122213134 -22069355 + MER20 DNA MER1_type 4 219 0 229 252 21 10 chr12 122213274 122213368 -22069121 + L2 LINE L2 2894 2987 -285 1021 257 20 12 chr12 122213386 122213631 -22068858 - MIR SINE MIR -14 248 2 202 328 229 0 chr12 122213659 122213781 -22068708 + L2 LINE L2 3123 3272 0 1643 216 76 36 chr12 122214116 122214565 -22067924 - MLT1C LTR MaLR 0 467 1 2130 101 35 7 chr12 122214678 122214966 -22067523 - AluSg SINE Alu -14 296 1 280 256 128 34 chr12 122214970 122215087 -22067402 - MIR SINE MIR -48 214 87 381 261 7 99 chr12 122215092 122215234 -22067255 - MER5A DNA MER1_type -6 183 55 881 219 117 43 chr12 122215266 122215745 -22066744 - MLT1F LTR MaLR 0 542 14 2279 144 37 3 chr12 122216035 122216388 -22066101 + MLT1A1 LTR MaLR 1 365 0 365 231 66 50 chr12 122216905 122217026 -22065463 - MIR SINE MIR -90 172 50 545 256 29 98 chr12 122217536 122217782 -22064707 - L2 LINE L2 -2 3311 3083 396 103 0 0 chr12 122217805 122217863 -22064626 + (GGGGA)n Simple_repeat Simple_repeat 3 60 0 795 153 0 16 chr12 122217890 122218014 -22064475 - FLAM_C SINE Alu -21 122 1 538 265 135 35 chr12 122218024 122218423 -22064066 - L2 LINE L2 -284 3029 2542 713 245 11 33 chr12 122218779 122218963 -22063526 + MIR SINE MIR 50 229 -33 1021 244 109 50 chr12 122218995 122219437 -22063052 + MLT1H LTR MaLR 78 545 -4 1874 177 38 27 chr12 122219496 122219868 -22062621 + MLT1D LTR MaLR 10 385 -120 677 178 0 0 chr12 122220000 122220101 -22062388 - FLAM_A SINE Alu -40 102 2 533 202 0 0 chr12 122220106 122220205 -22062284 + MLT1D LTR MaLR 407 505 0 770 286 17 17 chr12 122220339 122220570 -22061919 - MIR SINE MIR 0 262 32 1373 252 57 39 chr12 122221075 122221586 -22060903 + MLT1K LTR MaLR 40 559 -29 2101 138 17 0 chr12 122221629 122221927 -22060562 - AluSx SINE Alu -9 303 1 507 243 14 21 chr12 122221932 122222076 -22060413 - LTR16C LTR ERVL 0 491 349 1817 220 50 38 chr12 122222219 122222718 -22059771 + MLT1D LTR MaLR 1 505 0 540 244 0 8 chr12 122222998 122223117 -22059372 - MER117 DNA MER1_type -47 150 33 * 884 153 82 10 chr12 122223114 122223315 -22059174 + MLT1D LTR MaLR 238 439 -66 356 309 132 40 chr12 122223567 122223719 -22058770 - MIR SINE MIR -13 249 84 2024 122 0 18 chr12 122223806 122224119 -22058370 + AluJb SINE Alu 1 308 0 439 306 81 29 chr12 122224199 122224372 -22058117 - L2 LINE L2 -2 3311 3130 1812 159 0 14 chr12 122224815 122225092 -22057397 + AluJb SINE Alu 31 303 -9 707 237 11 88 chr12 122225096 122225358 -22057131 - MER102b DNA MER1_type -15 326 85 302 222 8 84 chr12 122225418 122225516 -22056973 - MIR3 SINE MIR -47 161 69 233 271 10 10 chr12 122225751 122225847 -22056642 + CT-rich Low_complexity Low_complexity 1 96 0 236 241 12 35 chr12 122225871 122226049 -22056440 + CT-rich Low_complexity Low_complexity 1 173 0 189 74 0 0 chr12 122226414 122226441 -22056048 + (TCTCCC)n Simple_repeat Simple_repeat 5 31 0 303 245 0 0 chr12 122226935 122227029 -22055460 + (TG)n Simple_repeat Simple_repeat 1 94 0 428 282 23 35 chr12 122227095 122227269 -22055220 + (CATG)n Simple_repeat Simple_repeat 1 172 0 249 312 13 0 chr12 122227243 122227320 -22055169 + (TG)n Simple_repeat Simple_repeat 1 78 0 * 312 301 13 39 chr12 122227496 122227652 -22054837 - MIR3 SINE MIR -27 181 30 703 235 59 13 chr12 122227783 122228002 -22054487 - MIR SINE MIR 0 208 4 311 161 18 0 chr12 122228203 122228259 -22054230 - MIR SINE MIR -110 152 96 467 265 77 33 chr12 122228333 122228514 -22053975 + MIR SINE MIR 60 248 -14 286 123 0 113 chr12 122229003 122229206 -22053283 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 349 158 22 44 chr12 122229232 122229415 -22053074 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 307 261 0 0 chr12 122229420 122229713 -22052776 + CT-rich Low_complexity Low_complexity 1 293 0 33 43 0 0 chr12 122229818 122229865 -22052624 + GC_rich Low_complexity Low_complexity 1 47 0 467 227 68 68 chr12 122230376 122230552 -22051937 + MIR SINE MIR 12 187 -75 192 303 61 0 chr12 122230740 122230806 -22051683 + MER5B DNA MER1_type 1 70 -108 352 287 41 33 chr12 122230971 122231093 -22051396 - MIR SINE MIR -107 155 33 1910 161 0 0 chr12 122231623 122231897 -22050592 + AluSx SINE Alu 31 304 -8 209 340 0 72 chr12 122231960 122232057 -22050432 - L2 LINE L2 -35 3237 3148 2485 84 0 3 chr12 122232083 122232391 -22050098 + AluSq SINE Alu 1 307 -6 1109 186 17 22 chr12 122232540 122232771 -22049718 - MIR SINE MIR -17 245 16 212 241 0 19 chr12 122233235 122233289 -22049200 + (CTGGGG)n Simple_repeat Simple_repeat 1 53 0 1456 160 13 4 chr12 122233665 122233896 -22048593 - AluJo SINE Alu -30 282 50 818 201 16 63 chr12 122233900 122234089 -22048400 - AluJo SINE Alu -132 180 1 438 354 38 0 chr12 122234597 122234806 -22047683 - MIR SINE MIR -11 251 35 435 252 34 25 chr12 122234824 122234943 -22047546 - MIR SINE MIR -115 147 28 200 207 172 23 chr12 122235023 122235110 -22047379 + MIR SINE MIR 119 218 -44 * 243 227 0 0 chr12 122235096 122235140 -22047349 + L2 LINE L2 2929 2972 -300 1217 189 67 47 chr12 122235188 122235442 -22047047 - AluJo SINE Alu -53 259 1 1820 143 10 23 chr12 122235741 122236042 -22046447 - AluJo SINE Alu -1 311 15 685 279 29 83 chr12 122236119 122236431 -22046058 - L2 LINE L2 -49 3223 2929 381 244 34 80 chr12 122236457 122236633 -22045856 - MIR SINE MIR -93 169 2 2312 112 0 0 chr12 122236655 122236958 -22045531 + AluSx SINE Alu 1 303 -9 1242 257 57 33 chr12 122237042 122237582 -22044907 - MLT1K LTR MaLR -14 574 87 2423 112 0 0 chr12 122237661 122237973 -22044516 + AluSx SINE Alu 1 312 0 227 258 32 105 chr12 122238189 122238313 -22044176 + MIR SINE MIR 109 223 -39 207 403 65 0 chr12 122238331 122238455 -22044034 - MIR SINE MIR -110 152 21 576 227 162 0 chr12 122238807 122238992 -22043497 - MIR SINE MIR -14 248 34 353 215 0 13 chr12 122239106 122239185 -22043304 + MER96 DNA MER1_type? 83 160 -15 215 21 106 0 chr12 122239200 122239247 -22043242 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 240 143 0 143 chr12 122239263 122239296 -22043193 - L2 LINE L2 -5 3267 3244 954 246 116 60 chr12 122239296 122239727 -22042762 - LTR16A1 LTR ERVL -2 455 1 240 143 0 143 chr12 122239727 122239749 -22042740 - L2 LINE L2 -28 3244 3220 281 242 121 30 chr12 122239796 122239895 -22042594 - MIR SINE MIR -48 214 107 415 270 31 37 chr12 122240306 122240469 -22042020 - MIR SINE MIR -43 219 58 348 285 98 24 chr12 122240607 122240730 -22041759 + MIR SINE MIR 5 136 -126 2711 7 0 0 chr12 122240832 122241159 -22041330 - AluYb8 SINE Alu 0 327 1 192 115 0 0 chr12 122241473 122241499 -22040990 - MIR SINE MIR -117 145 120 309 26 0 0 chr12 122241523 122241561 -22040928 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 1108 182 87 95 chr12 122241814 122242160 -22040329 - MER2 DNA MER2_type 0 344 2 492 333 118 5 chr12 122242178 122242373 -22040116 - MIR SINE MIR -21 241 25 213 194 30 60 chr12 122242965 122243032 -22039457 - L2 LINE L2 -16 3256 3192 * 342 244 22 74 chr12 122243031 122243166 -22039323 + L2 LINE L2 2627 2754 -560 1118 200 120 92 chr12 122243172 122243684 -22038805 + MLT1H LTR MaLR 35 409 0 324 109 0 0 chr12 122243861 122243907 -22038582 + L2 LINE L2 3268 3313 0 526 340 75 25 chr12 122243923 122244219 -22038270 - L2 LINE L2 -73 3199 2884 2237 121 0 0 chr12 122244219 122244567 -22037922 + AluSg SINE Alu 1 310 0 526 340 75 25 chr12 122244567 122244588 -22037901 - L2 LINE L2 -388 2884 2866 335 224 24 0 chr12 122245104 122245189 -22037300 + MER117 DNA MER1_type 106 192 -5 1008 182 33 33 chr12 122245588 122245802 -22036687 + MER58A DNA MER1_type 1 214 -10 511 293 89 0 chr12 122245818 122245975 -22036514 - MIR SINE MIR -41 221 51 617 191 149 26 chr12 122246168 122246363 -22036126 - MIR SINE MIR -16 246 26 262 216 0 0 chr12 122246511 122246562 -22035927 - MIR SINE MIR -110 152 102 261 180 0 0 chr12 122247578 122247628 -22034861 + (CA)n Simple_repeat Simple_repeat 2 51 0 685 250 80 0 chr12 122247634 122247810 -22034679 + MIR SINE MIR 48 237 -25 218 31 0 31 chr12 122247923 122247955 -22034534 + (CA)n Simple_repeat Simple_repeat 2 32 0 599 200 78 72 chr12 122248025 122248205 -22034284 + MIR SINE MIR 81 261 -1 1563 155 64 39 chr12 122248612 122248711 -22033778 + Charlie1 DNA MER1_type 2345 2440 -321 1967 156 3 16 chr12 122248711 122249025 -22033464 + AluJb SINE Alu 3 312 0 1563 155 64 39 chr12 122249025 122249092 -22033397 + Charlie1 DNA MER1_type 2440 2504 -257 1845 88 0 4 chr12 122249092 122249318 -22033171 - AluSx SINE Alu -87 225 1 1563 155 64 39 chr12 122249318 122249557 -22032932 + Charlie1 DNA MER1_type 2504 2761 0 278 289 96 26 chr12 122250901 122251057 -22031432 - LTR33 LTR ERVL -49 472 306 600 233 42 8 chr12 122251059 122251267 -22031222 + MER106B DNA MER1_type 1 1037 -22 1918 169 16 0 chr12 122251280 122251587 -22030902 + AluJb SINE Alu 1 312 0 393 306 217 9 chr12 122251601 122251951 -22030538 + HAL1 LINE L1 880 1302 -1205 252 125 0 69 chr12 122251951 122252023 -22030466 + (GAAA)n Simple_repeat Simple_repeat 1 67 0 355 190 9 36 chr12 122252024 122252141 -22030348 - AluS SINE Alu -246 57 2 616 228 99 13 chr12 122252208 122252574 -22029915 - L1ME3 LINE L1 0 6162 5652 2197 131 3 6 chr12 122252705 122253018 -22029471 + AluSx SINE Alu 1 312 0 460 149 0 0 chr12 122253486 122253553 -22028936 - AluJ/FLAM SINE Alu -245 67 1 2489 105 30 16 chr12 122253776 122254146 -22028343 - THE1C LTR MaLR 0 375 1 275 258 65 0 chr12 122255188 122255281 -22027208 - MLT1L LTR MaLR -10 605 507 2313 115 0 0 chr12 122255319 122255623 -22026866 - AluSx SINE Alu -8 304 1 254 250 51 77 chr12 122255651 122255807 -22026682 - MLT1L LTR MaLR -224 391 240 2095 120 13 28 chr12 122255817 122256134 -22026355 - AluSx SINE Alu 0 312 1 228 254 28 14 chr12 122256136 122256207 -22026282 - MLT1J LTR MaLR -331 180 109 479 268 29 62 chr12 122256431 122256640 -22025849 + L2 LINE L2 2899 3100 -213 202 216 0 0 chr12 122256909 122256946 -22025543 + (CA)n Simple_repeat Simple_repeat 1 37 0 219 347 32 11 chr12 122257368 122257463 -22025026 + L2 LINE L2 3122 3218 -54 214 106 43 0 chr12 122259664 122259711 -22022778 + GA-rich Low_complexity Low_complexity 1 49 0 276 263 53 0 chr12 122260308 122260384 -22022105 + MIR SINE MIR 101 180 -82 930 224 103 10 chr12 122260423 122260713 -22021776 - L2 LINE L2 -6 3307 2991 460 291 31 25 chr12 122261215 122261401 -22021088 + MIR SINE MIR 5 192 -63 201 231 19 19 chr12 122262252 122262304 -22020185 - L2 LINE L2 -18 3295 3244 533 289 0 7 chr12 122262476 122262611 -22019878 + L2 LINE L2 3180 3313 0 2185 86 0 62 chr12 122262905 122263230 -22019259 - AluY SINE Alu -6 305 1 726 290 68 5 chr12 122263360 122263567 -22018922 + MIR SINE MIR 14 233 -29 2107 52 59 0 chr12 122263637 122263909 -22018580 - AluSp SINE Alu -6 307 20 1966 119 26 26 chr12 122264265 122264568 -22017921 + AluSx SINE Alu 1 303 -9 306 308 70 47 chr12 122264830 122265002 -22017487 + L2 LINE L2 3097 3272 0 369 296 51 66 chr12 122265084 122265280 -22017209 + MIR SINE MIR 69 261 -1 645 275 44 16 chr12 122265787 122265969 -22016520 + MIR SINE MIR 16 202 -60 260 218 77 0 chr12 122266113 122266194 -22016295 - MIR SINE MIR -62 146 60 505 268 14 22 chr12 122266205 122266343 -22016146 - MIR SINE MIR -89 173 37 250 323 125 53 chr12 122267341 122267678 -22014811 + L2 LINE L2 2909 3269 -3 219 315 115 23 chr12 122267679 122267809 -22014680 - MIR SINE MIR -14 248 107 2233 119 3 3 chr12 122267906 122268218 -22014271 - AluSx SINE Alu 0 312 1 244 335 98 59 chr12 122269409 122269645 -22012844 - L2 LINE L2 -62 3210 2966 187 269 193 0 chr12 122269625 122269744 -22012745 - L2 LINE L2 -650 2664 2523 * 600 285 91 33 chr12 122269889 122270219 -22012270 + MLT1H LTR MaLR 201 549 0 703 314 104 19 chr12 122270250 122270568 -22011921 - L1M4 LINE L1 -3124 3022 2678 2584 119 56 17 chr12 122270678 122270909 -22011580 - MSTA LTR MaLR 0 428 173 2227 99 0 3 chr12 122270909 122271211 -22011278 - AluSc SINE Alu -2 307 7 2584 119 56 17 chr12 122271211 122271391 -22011098 - MSTA LTR MaLR -255 173 1 365 272 198 6 chr12 122271625 122271787 -22010702 + MIR SINE MIR 59 251 -11 325 276 80 2 chr12 122272201 122272371 -22010118 - MLT1D LTR MaLR -62 405 216 199 336 88 15 chr12 122272622 122272759 -22009730 + L2 LINE L2 2913 3059 -213 1921 111 20 30 chr12 122272868 122273166 -22009323 - AluSx SINE Alu -17 295 1 983 104 8 0 chr12 122273166 122273300 -22009189 - AluSq/x SINE Alu -178 135 1 288 302 12 0 chr12 122273304 122273390 -22009099 + L2 LINE L2 3226 3312 -1 330 184 140 26 chr12 122273413 122273527 -22008962 + MLT1C LTR MaLR 8 134 -371 1534 114 138 8 chr12 122273558 122273812 -22008677 + AluSg1 SINE Alu 1 287 -22 642 222 6 35 chr12 122273812 122273974 -22008515 + MLT1C LTR MaLR 309 467 0 2060 147 0 0 chr12 122274271 122274583 -22007906 + AluJo SINE Alu 1 312 0 2742 72 3 0 chr12 122274628 122274975 -22007514 - L1PA7 LINE L1 0 6154 5807 581 274 111 4 chr12 122275106 122275340 -22007149 + MLT1J LTR MaLR 2 260 -251 182 333 87 8 chr12 122275914 122276040 -22006449 + MIR SINE MIR 29 164 -98 370 306 165 0 chr12 122276497 122276667 -22005822 - MIR SINE MIR 0 262 65 191 138 215 31 chr12 122276833 122276898 -22005591 + MIR3 SINE MIR 84 160 -48 829 136 65 0 chr12 122276916 122277070 -22005419 - MER58A DNA MER1_type -21 203 40 2146 90 3 7 chr12 122277396 122277685 -22004804 - AluSc SINE Alu -21 288 1 2038 141 0 3 chr12 122277879 122278183 -22004306 + AluSx SINE Alu 7 309 -3 728 343 108 16 chr12 122278219 122278261 -22004228 + L2 LINE L2 2160 2197 -1117 1942 148 0 6 chr12 122278261 122278572 -22003917 - AluJo SINE Alu -3 309 1 728 343 108 16 chr12 122278572 122279022 -22003467 + L2 LINE L2 2197 2697 -617 366 282 32 16 chr12 122279285 122279409 -22003080 + L2 LINE L2 3181 3306 -7 181 270 127 0 chr12 122279424 122279487 -22003002 + L2 LINE L2 2077 2147 -1167 236 324 14 14 chr12 122280151 122280225 -22002264 - L2 LINE L2 -66 3206 3133 255 293 0 0 chr12 122280971 122281029 -22001460 + L2 LINE L2 3201 3258 -14 267 31 0 0 chr12 122281029 122281061 -22001428 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 931 122 15 0 chr12 122281477 122281608 -22000881 + AluSq/x SINE Alu 1 133 -180 2032 102 51 0 chr12 122281611 122281906 -22000583 + AluSx SINE Alu 1 310 -2 259 391 32 13 chr12 122282237 122282393 -22000096 - MIR SINE MIR -1 261 103 266 337 19 12 chr12 122282644 122282807 -21999682 - LTR33 LTR ERVL -339 184 45 875 111 130 6 chr12 122283815 122283977 -21998512 + MER30 DNA MER1_type 3 184 -46 279 282 188 18 chr12 122283998 122284275 -21998214 - L2 LINE L2 -290 3023 2682 462 283 19 25 chr12 122284682 122284841 -21997648 - MIR SINE MIR -80 182 25 573 216 274 0 chr12 122285273 122285426 -21997063 + AluJo SINE Alu 107 301 -11 482 323 36 16 chr12 122285732 122285924 -21996565 - MIR SINE MIR -46 216 21 411 359 81 0 chr12 122286333 122286542 -21995947 - MIR SINE MIR -35 227 2 303 294 11 43 chr12 122287044 122287228 -21995261 + GA-rich Low_complexity Low_complexity 1 178 0 193 268 18 18 chr12 122287543 122287599 -21994890 + L2 LINE L2 3217 3272 0 383 290 131 0 chr12 122287821 122287966 -21994523 - MIR SINE MIR -79 183 20 193 250 65 65 chr12 122288262 122288354 -21994135 + L2 LINE L2 3187 3278 -35 208 224 41 0 chr12 122288373 122288422 -21994067 + MIR SINE MIR 82 132 -76 288 290 14 0 chr12 122288757 122288826 -21993663 + L2 LINE L2 3227 3296 -17 956 265 161 18 chr12 122289390 122290077 -21992412 + L2 LINE L2 2510 3311 -2 233 136 258 0 chr12 122290316 122290382 -21992107 + MIR SINE MIR 114 196 -66 671 215 75 51 chr12 122291453 122291667 -21990822 + MIR SINE MIR 44 262 0 198 0 0 0 chr12 122291764 122291786 -21990703 + (A)n Simple_repeat Simple_repeat 1 22 0 269 279 0 0 chr12 122291873 122291941 -21990548 + Charlie8 DNA MER1_type 88 155 -2262 1664 144 76 11 chr12 122292668 122292945 -21989544 - AluSx SINE Alu -17 295 1 247 287 124 39 chr12 122293030 122293159 -21989330 + MIR SINE MIR 46 185 -77 262 241 101 25 chr12 122293165 122293244 -21989245 - L2 LINE L2 -1 3312 3228 264 310 115 18 chr12 122293344 122293457 -21989032 + MIR SINE MIR 108 231 -31 234 333 116 22 chr12 122293634 122293772 -21988717 - MIR SINE MIR -79 183 33 183 321 85 57 chr12 122293893 122293904 -21988585 + MER5A DNA MER1_type 7 20 -169 402 287 95 2 chr12 122293904 122294060 -21988429 - MER5B DNA MER1_type 0 178 19 21 0 0 0 chr12 122294233 122294254 -21988235 + GC_rich Low_complexity Low_complexity 1 21 0 382 314 37 16 chr12 122294733 122294921 -21987568 - Charlie8 DNA MER1_type -2225 192 1 2137 121 0 0 chr12 122295849 122296146 -21986343 - AluSx SINE Alu -7 305 9 1049 307 125 59 chr12 122296652 122297401 -21985088 + L2 LINE L2 2202 3094 -219 2040 117 0 23 chr12 122297401 122297701 -21984788 - AluJo SINE Alu -10 302 10 1049 307 125 59 chr12 122297701 122297923 -21984566 + L2 LINE L2 3094 3300 -13 234 0 0 0 chr12 122297923 122297949 -21984540 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 888 215 0 15 chr12 122298127 122298322 -21984167 - MER58A DNA MER1_type -3 221 30 259 359 63 19 chr12 122298461 122298620 -21983869 + MIR SINE MIR 83 248 -14 279 287 128 11 chr12 122298820 122298914 -21983575 + MIR SINE MIR 158 262 0 223 267 33 0 chr12 122300345 122300405 -21982084 - L2 LINE L2 -22 3250 3189 192 77 0 0 chr12 122300482 122300508 -21981981 + (CA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr12 122300580 122300605 -21981884 + (CA)n Simple_repeat Simple_repeat 1 25 0 357 24 0 0 chr12 122300655 122300697 -21981792 + (CA)n Simple_repeat Simple_repeat 2 43 0 309 51 0 0 chr12 122300744 122300783 -21981706 + (CATA)n Simple_repeat Simple_repeat 3 41 0 258 56 0 0 chr12 122300833 122300869 -21981620 + (CA)n Simple_repeat Simple_repeat 2 37 0 288 0 0 0 chr12 122300911 122300943 -21981546 + (CA)n Simple_repeat Simple_repeat 2 33 0 347 343 83 18 chr12 122301123 122301292 -21981197 - MIR SINE MIR -13 249 70 513 204 9 9 chr12 122301374 122301482 -21981007 + MIR SINE MIR 51 158 -104 2108 168 53 32 chr12 122301499 122301974 -21980515 - MER6A DNA MER2_type -26 579 95 384 206 31 31 chr12 122302157 122302254 -21980235 - MER6A DNA MER2_type -477 128 32 693 291 4 5 chr12 122303134 122303349 -21979140 + MIR SINE MIR 22 237 -25 261 236 24 144 chr12 122303390 122303579 -21978910 - MIR SINE MIR -65 143 12 539 311 82 26 chr12 122304160 122304575 -21977914 + LTR33 LTR ERVL 5 442 -79 285 333 92 7 chr12 122304781 122304934 -21977555 + MIR SINE MIR 63 228 -34 2363 89 0 3 chr12 122305076 122305389 -21977100 - AluSx SINE Alu 0 312 1 191 273 55 0 chr12 122305453 122305508 -21976981 + MIR SINE MIR 29 86 -176 336 299 47 19 chr12 122305618 122305725 -21976764 + MIR SINE MIR 97 206 -56 513 281 54 88 chr12 122306189 122306599 -21975890 - L2 LINE L2 -23 3249 2854 248 269 92 15 chr12 122307490 122307620 -21974869 + L2 LINE L2 2832 2971 -342 387 280 150 0 chr12 122308012 122308205 -21974284 - LTR33 LTR ERVL -297 224 3 1182 172 76 8 chr12 122309106 122309368 -21973121 - L1MB8 LINE L1 -1 6177 5898 576 313 71 8 chr12 122309475 122309715 -21972774 + MIR SINE MIR 8 262 0 1518 173 88 54 chr12 122310043 122310393 -21972096 + MLT1C LTR MaLR 36 403 -64 1823 158 7 0 chr12 122310393 122310677 -21971812 - AluJo SINE Alu -26 286 1 1518 173 88 54 chr12 122310677 122310736 -21971753 + MLT1C LTR MaLR 403 459 -8 714 291 94 0 chr12 122311630 122311864 -21970625 + MIR SINE MIR 7 262 0 346 269 48 54 chr12 122313485 122313671 -21968818 + LTR33 LTR ERVL 44 228 -293 236 336 84 15 chr12 122315232 122315363 -21967126 + MIR SINE MIR 106 245 -17 33 0 0 0 chr12 122315399 122315432 -21967057 + AT_rich Low_complexity Low_complexity 1 33 0 2249 95 7 3 chr12 122315432 122315726 -21966763 + AluSx SINE Alu 1 295 -17 251 373 38 6 chr12 122316317 122316475 -21966014 - MIR SINE MIR -31 231 69 370 305 128 0 chr12 122317736 122317900 -21964589 + MIR SINE MIR 22 206 -56 669 268 57 10 chr12 122320464 122320673 -21961816 - MIR SINE MIR -30 232 14 282 336 112 0 chr12 122320972 122321097 -21961392 - MIR SINE MIR -16 246 108 180 342 62 51 chr12 122324299 122324574 -21957915 + L2 LINE L2 2994 3271 -1 294 299 137 8 chr12 122324693 122324810 -21957679 - MIR SINE MIR -110 152 21 360 0 0 0 chr12 122325139 122325179 -21957310 + (TG)n Simple_repeat Simple_repeat 1 40 0 309 109 0 0 chr12 122325210 122325256 -21957233 + (GA)n Simple_repeat Simple_repeat 1 46 0 258 305 19 19 chr12 122325663 122325768 -21956721 + L3b LINE CR1 1282 1386 -197 259 267 27 0 chr12 122325868 122325943 -21956546 - MIR3 SINE MIR -39 169 93 264 30 0 0 chr12 122326869 122326902 -21955587 + (TG)n Simple_repeat Simple_repeat 1 33 0 269 301 32 11 chr12 122327648 122327741 -21954748 - MIR SINE MIR -81 181 87 190 309 43 11 chr12 122327760 122327854 -21954635 - MIR SINE MIR -145 117 21 816 338 93 16 chr12 122328698 122329239 -21953250 + L2 LINE L2 2731 3313 0 209 235 21 0 chr12 122330195 122330252 -21952237 + MIR SINE MIR 50 107 -101 393 250 188 7 chr12 122330262 122330406 -21952083 + MER5A DNA MER1_type 18 187 -2 439 299 99 5 chr12 122330406 122330607 -21951882 - Charlie8 DNA MER1_type -2182 235 16 283 242 53 38 chr12 122331171 122331303 -21951186 - Charlie7 DNA MER1_type -25 2587 2454 1671 163 7 28 chr12 122331303 122331585 -21950904 + AluSx SINE Alu 1 276 -36 216 0 0 0 chr12 122331592 122331616 -21950873 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 380 354 49 18 chr12 122331706 122331932 -21950557 - MIR SINE MIR -9 253 21 386 282 38 15 chr12 122332156 122332287 -21950202 + MER103 DNA DNA 16 149 -17 218 205 0 0 chr12 122332597 122332636 -21949853 + MIR SINE MIR 107 145 -63 714 236 168 0 chr12 122335100 122335291 -21947198 - MER58A DNA MER1_type 0 224 2 21 36 0 0 chr12 122335474 122335502 -21946987 + GC_rich Low_complexity Low_complexity 1 28 0 2717 37 0 186 chr12 122335553 122336359 -21946130 + SVA Other Other 393 866 -520 6905 58 14 52 chr12 122336375 122337367 -21945122 + SVA Other Other 433 1386 0 280 224 0 131 chr12 122337838 122337945 -21944544 + L2 LINE L2 3221 3313 0 364 297 31 8 chr12 122340033 122340161 -21942328 + MIR SINE MIR 117 247 -15 1919 174 7 0 chr12 122340173 122340483 -21942006 + AluJb SINE Alu 1 312 0 257 203 47 31 chr12 122341213 122341277 -21941212 + MLT1I LTR MaLR 345 409 0 774 275 28 5 chr12 122341599 122341817 -21940672 + MER58A DNA MER1_type 2 224 0 360 0 0 0 chr12 122342297 122342337 -21940152 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr12 122343092 122343115 -21939374 + AT_rich Low_complexity Low_complexity 1 23 0 427 242 31 37 chr12 122343752 122343850 -21938639 + MER53 DNA DNA 23 121 -68 216 0 0 0 chr12 122343850 122343874 -21938615 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 427 242 31 37 chr12 122343874 122343936 -21938553 + MER53 DNA DNA 121 182 -7 348 119 0 0 chr12 122346692 122346751 -21935738 + (GA)n Simple_repeat Simple_repeat 1 59 0 553 231 56 7 chr12 122347267 122347410 -21935079 - MIR SINE MIR -111 151 2 4929 209 87 35 chr12 122347458 122347661 -21934828 + L1MC4 LINE L1 6487 6678 -1364 1658 174 3 30 chr12 122347661 122347959 -21934530 + AluJo SINE Alu 5 294 -18 324 0 0 0 chr12 122347963 122347999 -21934490 + (CA)n Simple_repeat Simple_repeat 2 37 0 4929 209 87 35 chr12 122347999 122348020 -21934469 + L1MC4 LINE L1 6680 6698 -1344 935 133 78 87 chr12 122348020 122348238 -21934251 + MER20 DNA MER1_type 4 219 0 4929 209 87 35 chr12 122348238 122349486 -21933003 + L1MC4 LINE L1 6698 8041 -1 2369 75 0 10 chr12 122349532 122349827 -21932662 - AluY SINE Alu -11 300 9 1815 165 0 0 chr12 122349830 122350097 -21932392 - AluJb SINE Alu -45 267 1 335 23 23 0 chr12 122350327 122350371 -21932118 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 1034 228 45 14 chr12 122350652 122350942 -21931547 + MER58B DNA MER1_type 43 341 0 317 260 8 81 chr12 122350956 122351019 -21931470 - MER5B DNA MER1_type -6 172 121 2405 87 7 3 chr12 122351019 122351329 -21931160 + AluY SINE Alu 1 311 0 317 260 8 81 chr12 122351329 122351388 -21931101 - MER5B DNA MER1_type -57 121 59 1706 188 0 7 chr12 122351393 122351686 -21930803 - AluJb SINE Alu -21 291 1 229 260 96 32 chr12 122352201 122352382 -21930107 - MIR SINE MIR -46 216 21 * 352 341 93 22 chr12 122352319 122352545 -21929944 + MIR SINE MIR 8 249 -13 371 252 122 0 chr12 122352567 122352706 -21929783 + MER20B DNA MER1_type 1 156 -627 761 187 47 0 chr12 122352815 122352965 -21929524 - MER20 DNA MER1_type -62 157 1 223 25 50 25 chr12 122353315 122353355 -21929134 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr12 122353807 122353829 -21928660 + AT_rich Low_complexity Low_complexity 1 22 0 1788 143 3 50 chr12 122354466 122354767 -21927722 - AluJo SINE Alu -25 287 1 436 252 79 29 chr12 122355861 122356000 -21926489 + MIR SINE MIR 20 165 -97 407 233 92 31 chr12 122356492 122356655 -21925834 - L1ME4a LINE L1 0 6121 5949 1729 144 74 25 chr12 122356691 122356975 -21925514 - AluJo SINE Alu -14 298 1 567 120 0 11 chr12 122357002 122357094 -21925395 - AluJ/FLAM SINE Alu -220 92 2 531 289 11 32 chr12 122357197 122357387 -21925102 - L1ME4a LINE L1 -347 5774 5589 707 222 22 93 chr12 122357387 122357612 -21924877 - MER3 DNA MER1_type 0 209 1 307 180 90 45 chr12 122359516 122359605 -21922884 + L1MC3 LINE L1 6569 6661 -1124 251 228 0 0 chr12 122359606 122359663 -21922826 + (TA)n Simple_repeat Simple_repeat 2 58 0 516 127 13 0 chr12 122360521 122360600 -21921889 - MER119 DNA MER1_type -49 534 455 491 278 63 0 chr12 122360601 122360727 -21921762 - MER119 DNA MER1_type -449 134 1 363 213 107 60 chr12 122360740 122360833 -21921656 - MIR SINE MIR -54 208 104 2139 138 10 0 chr12 122360833 122361130 -21921359 - AluSx SINE Alu -12 300 1 363 213 107 60 chr12 122361130 122361186 -21921303 - MIR SINE MIR -158 104 52 761 189 0 0 chr12 122361195 122361327 -21921162 + FLAM_A SINE Alu 1 132 -1 309 217 0 0 chr12 122361346 122361406 -21921083 + MER91B DNA MER1_type 1 60 -130 21 36 0 0 chr12 122362659 122362687 -21919802 + AT_rich Low_complexity Low_complexity 1 28 0 474 264 43 55 chr12 122362787 122362950 -21919539 - MIR3 SINE MIR -12 196 36 195 244 0 0 chr12 122363089 122363130 -21919359 - MIR SINE MIR -57 151 111 242 247 13 78 chr12 122363261 122363338 -21919151 + L2 LINE L2 3233 3304 -9 425 231 56 0 chr12 122364047 122364155 -21918334 - MER117 DNA MER1_type -53 144 31 353 297 102 8 chr12 122364170 122364298 -21918191 - MIR3 SINE MIR -50 158 19 273 75 0 0 chr12 122365151 122365191 -21917298 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 2174 104 0 21 chr12 122365191 122365479 -21917010 - AluSx SINE Alu -30 282 1 260 305 12 24 chr12 122365480 122365562 -21916927 - L3 LINE CR1 -69 1508 1428 1570 163 66 170 chr12 122365609 122365984 -21916505 - L1MD1 LINE L1 -1 6241 5955 1974 146 17 7 chr12 122365984 122366286 -21916203 + AluJo SINE Alu 1 305 -7 1570 163 66 170 chr12 122366286 122366535 -21915954 - L1MD1 LINE L1 -287 5955 5682 1091 211 13 8 chr12 122366550 122366787 -21915702 - L1MB8 LINE L1 -4 6174 5937 464 125 14 0 chr12 122366788 122366860 -21915629 + MER2 DNA MER2_type 7 79 -266 229 259 0 0 chr12 122366867 122366921 -21915568 + MER2 DNA MER2_type 282 335 -10 1305 223 185 13 chr12 122366934 122367324 -21915165 - L1MB8 LINE L1 -267 5917 5461 273 346 28 55 chr12 122367611 122367828 -21914661 - L3 LINE CR1 -615 962 752 343 294 166 28 chr12 122368499 122368788 -21913701 + L2 LINE L2 2386 2714 -600 2558 250 48 50 chr12 122368860 122370275 -21912214 + L1ME3A LINE L1 4729 6148 -22 356 235 199 15 chr12 122370292 122370428 -21912061 + L2 LINE L2 2910 3070 -243 1115 245 83 5 chr12 122370473 122370845 -21911644 + MLT1C LTR MaLR 66 466 -1 584 246 58 68 chr12 122370850 122371057 -21911432 + L2 LINE L2 3089 3293 -20 270 0 0 0 chr12 122372238 122372268 -21910221 + (A)n Simple_repeat Simple_repeat 1 30 0 275 198 28 34 chr12 122372388 122372470 -21910019 + MIR SINE MIR 43 123 -85 216 228 203 57 chr12 122372521 122372644 -21909845 - L2 LINE L2 -4 3309 3169 1599 174 22 4 chr12 122372787 122373062 -21909427 - AluJo SINE Alu -12 300 21 469 258 133 31 chr12 122373487 122373712 -21908777 - MIR SINE MIR 0 262 15 663 202 0 0 chr12 122374036 122374155 -21908334 - MER45A DNA AcHobo 0 178 60 257 329 12 0 chr12 122374291 122374373 -21908116 + MIR SINE MIR 109 191 -71 286 309 0 12 chr12 122375206 122375290 -21907199 - MIR SINE MIR -4 258 176 195 250 0 0 chr12 122375999 122376035 -21906454 + L2 LINE L2 3240 3275 -38 375 335 58 54 chr12 122376113 122376373 -21906116 + MIR SINE MIR 2 262 0 593 266 11 23 chr12 122378081 122378258 -21904231 + MER5B DNA MER1_type 1 175 -3 616 302 86 5 chr12 122379298 122379520 -21902969 + MIR SINE MIR 22 261 -1 338 198 139 35 chr12 122379539 122379711 -21902778 + L2 LINE L2 2999 3188 -125 906 205 0 67 chr12 122379720 122379792 -21902697 - MER3 DNA MER1_type 0 209 134 2245 107 14 0 chr12 122379792 122380082 -21902407 + AluSx SINE Alu 1 294 -18 906 205 0 67 chr12 122380082 122380115 -21902374 - MER3 DNA MER1_type -75 134 100 2528 208 58 4 chr12 122380115 122380629 -21901860 + MLT1F LTR MaLR 1 542 0 906 205 0 67 chr12 122380629 122380746 -21901743 - MER3 DNA MER1_type -109 100 1 185 333 0 15 chr12 122380775 122380841 -21901648 + L2 LINE L2 3244 3308 -5 203 211 0 0 chr12 122381033 122381071 -21901418 + MER5A DNA MER1_type 88 125 -64 215 322 0 0 chr12 122381419 122381478 -21901011 - MIR SINE MIR -19 243 185 2566 54 0 0 chr12 122382952 122383248 -21899241 + AluY SINE Alu 1 296 -15 434 258 153 45 chr12 122383473 122383956 -21898533 + L2 LINE L2 2605 3129 -184 359 323 123 47 chr12 122384968 122385327 -21897162 - Tigger8 DNA MER2_type -91 575 190 527 256 116 74 chr12 122385522 122385995 -21896494 + LTR33 LTR ERVL 29 521 0 1537 189 128 62 chr12 122386393 122386515 -21895974 + MLT1C LTR MaLR 1 113 -354 2159 118 7 3 chr12 122386515 122386812 -21895677 + AluSx SINE Alu 1 298 -14 1537 189 128 62 chr12 122386812 122387127 -21895362 + MLT1C LTR MaLR 113 467 0 282 266 36 86 chr12 122387155 122387294 -21895195 + L2 LINE L2 2729 2860 -454 304 395 12 19 chr12 122388796 122388958 -21893531 + L2 LINE L2 3147 3307 -6 753 243 6 29 chr12 122389051 122389224 -21893265 - MIR SINE MIR -54 208 40 312 292 29 70 chr12 122389255 122389426 -21893063 + MIR3 SINE MIR 37 200 -8 210 143 0 0 chr12 122390785 122390820 -21891669 + (TTC)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 122390904 122390928 -21891561 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 240 59 0 0 chr12 122391246 122391280 -21891209 + (A)n Simple_repeat Simple_repeat 1 34 0 320 291 51 20 chr12 122391475 122391671 -21890818 + L1ME4a LINE L1 5705 5906 -215 2216 131 0 0 chr12 122391716 122392038 -21890451 + AluSx SINE Alu 1 322 0 321 26 0 0 chr12 122392076 122392114 -21890375 + (CA)n Simple_repeat Simple_repeat 1 38 0 333 0 0 0 chr12 122392287 122392324 -21890165 + (TG)n Simple_repeat Simple_repeat 2 38 0 459 305 58 0 chr12 122393587 122393761 -21888728 - Charlie8 DNA MER1_type -2153 264 81 337 277 64 0 chr12 122394521 122394637 -21887852 + MIR SINE MIR 42 165 -66 382 264 64 49 chr12 122395246 122395615 -21886874 + L2 LINE L2 2820 3205 -108 437 313 60 18 chr12 122395775 122395941 -21886548 + MIR SINE MIR 15 187 -75 1780 141 4 11 chr12 122397627 122397890 -21884599 - AluJb SINE Alu -25 287 27 312 172 62 0 chr12 122397971 122398035 -21884454 - MIR SINE MIR -111 151 84 233 304 50 70 chr12 122398157 122398358 -21884131 - L2 LINE L2 -5 3308 3112 318 283 55 35 chr12 122398627 122398772 -21883717 - L2 LINE L2 -57 3256 3109 2126 99 21 7 chr12 122399411 122399724 -21882765 + AluSq SINE Alu 1 317 0 701 111 41 29 chr12 122401088 122401260 -21881229 + GA-rich Low_complexity Low_complexity 3 176 0 355 190 9 36 chr12 122401283 122401400 -21881089 - AluS SINE Alu -246 57 2 352 277 61 32 chr12 122401633 122401821 -21880668 - L1ME2 LINE L1 -317 5847 5648 300 307 9 9 chr12 122403030 122403144 -21879345 + Charlie8 DNA MER1_type 109 222 -2195 931 217 79 5 chr12 122404243 122404446 -21878043 - MER20 DNA MER1_type 0 219 2 373 286 0 11 chr12 122405174 122405265 -21877224 - L1MC4 LINE L1 -1339 6703 6614 1579 158 22 11 chr12 122405601 122405874 -21876615 - MLT1A1 LTR MaLR -25 340 65 1121 115 44 11 chr12 122405870 122406070 -21876419 + MLT2A2 LTR ERVL 293 453 0 * 353 266 55 9 chr12 122406238 122406347 -21876142 + MIR SINE MIR 28 141 -67 2100 165 29 11 chr12 122406504 122406885 -21875604 - MLT1B LTR MaLR 0 390 3 988 247 94 43 chr12 122407018 122407508 -21874981 - MLT1H1 LTR MaLR -8 547 33 207 328 15 15 chr12 122408168 122408235 -21874254 + MIR SINE MIR 16 82 -126 417 276 31 0 chr12 122408281 122408379 -21874110 - MIR SINE MIR -45 217 117 702 209 4 12 chr12 122408440 122408702 -21873787 + GA-rich Low_complexity Low_complexity 1 259 0 2251 124 3 0 chr12 122409221 122409520 -21872969 - AluSx SINE Alu -12 300 1 303 279 184 28 chr12 122409531 122409648 -21872841 - L1ME4a LINE L1 -188 5933 5836 224 59 29 0 chr12 122409648 122409682 -21872807 + (TA)n Simple_repeat Simple_repeat 2 36 0 303 279 184 28 chr12 122409682 122409743 -21872746 - L1ME4a LINE L1 -285 5836 5727 456 302 144 14 chr12 122409910 122410125 -21872364 + MIR SINE MIR 17 259 -3 277 255 102 31 chr12 122410139 122410237 -21872252 + MIR SINE MIR 116 220 -42 1073 159 14 48 chr12 122410251 122410459 -21872030 - AluJb SINE Alu -27 285 85 21 57 0 0 chr12 122410469 122410504 -21871985 + AT_rich Low_complexity Low_complexity 1 35 0 235 258 0 32 chr12 122410983 122411045 -21871444 - MIR SINE MIR -192 70 11 1886 152 69 13 chr12 122411174 122411563 -21870926 - L1MA5 LINE L1 0 6300 5890 279 256 58 23 chr12 122411579 122411665 -21870824 - MIR SINE MIR -87 175 87 882 171 55 0 chr12 122412269 122412415 -21870074 + AluJb SINE Alu 137 290 -22 308 306 117 57 chr12 122412430 122412536 -21869953 - L1MC/D LINE L1 -1900 5908 5810 1131 114 144 0 chr12 122412536 122412737 -21869752 + MER30 DNA MER1_type 1 230 0 308 306 117 57 chr12 122412737 122413014 -21869475 - L1MC/D LINE L1 -1998 5810 5502 680 246 62 35 chr12 122413379 122413668 -21868821 + LTR16A1 LTR ERVL 148 444 -13 230 235 133 10 chr12 122414568 122414666 -21867823 - L1MC/D LINE L1 -2034 5774 5665 472 247 198 8 chr12 122414687 122414973 -21867516 - MER110 LTR ERV1 -6 485 130 283 276 129 0 chr12 122415090 122415206 -21867283 - MER97b DNA MER1_type? -901 152 22 1332 251 121 21 chr12 122415400 122416056 -21866433 - L1MD3 LINE L1 -19 7976 7059 436 186 88 10 chr12 122416273 122416375 -21866114 + MER5A DNA MER1_type 3 112 -77 2033 133 0 7 chr12 122416859 122417137 -21865352 - AluSx SINE Alu -36 276 1 990 177 67 5 chr12 122417165 122417374 -21865115 - L1MB3 LINE L1 -72 6111 5890 184 271 56 76 chr12 122417407 122417551 -21864938 - MIR SINE MIR -95 167 27 281 102 0 61 chr12 122417555 122417604 -21864885 - MSTA LTR MaLR 0 426 381 * 733 76 0 19 chr12 122417600 122417705 -21864784 + LTR7 LTR ERV1 346 448 -2 1094 82 0 0 chr12 122417707 122417854 -21864635 + HERVH LTR ERV1 1 147 -7566 * 1125 129 0 0 chr12 122417852 122418022 -21864467 + HERVH LTR ERV1 1946 2115 -5598 2367 77 104 5 chr12 122418039 122418414 -21864075 + LTR7 LTR ERV1 1 412 -38 180 0 0 0 chr12 122418414 122418434 -21864055 + (A)n Simple_repeat Simple_repeat 1 20 0 1864 115 161 6 chr12 122418434 122418781 -21863708 - MSTA LTR MaLR -27 401 1 1599 138 241 11 chr12 122419121 122419469 -21863020 + MSTA LTR MaLR 1 428 0 875 242 17 83 chr12 122419796 122419963 -21862526 - MER58A DNA MER1_type -2196 224 76 1898 140 30 7 chr12 122419963 122420263 -21862226 + AluJb SINE Alu 1 307 -5 875 242 17 83 chr12 122420263 122420335 -21862154 - MER58A DNA MER1_type -2344 76 1 595 258 156 41 chr12 122420537 122420928 -21861561 + LTR33 LTR ERVL 84 519 -2 1565 231 173 20 chr12 122421011 122421513 -21860976 + MLT1E LTR MaLR 10 588 -5 260 292 83 0 chr12 122421525 122421621 -21860868 - MIR SINE MIR -112 150 47 356 261 126 0 chr12 122422516 122422635 -21859854 - L2 LINE L2 -5 3308 3175 780 236 169 49 chr12 122422635 122423101 -21859388 - MLT1H LTR MaLR -14 535 14 422 202 105 26 chr12 122423286 122423400 -21859089 - MIR SINE MIR -111 151 29 1220 256 43 61 chr12 122423746 122424191 -21858298 - LTR40a LTR ERVL -82 437 1 513 248 92 19 chr12 122424191 122424397 -21858092 - MIR SINE MIR -29 233 13 258 256 248 16 chr12 122424453 122424582 -21857907 - MIR SINE MIR -71 191 33 353 254 142 32 chr12 122426389 122426547 -21855942 - MIR SINE MIR -48 214 28 464 343 56 15 chr12 122426738 122426936 -21855553 - MIR SINE MIR -50 212 7 400 256 0 0 chr12 122427780 122427862 -21854627 - L2 LINE L2 -15 3257 3176 209 106 0 43 chr12 122428412 122428459 -21854030 + (TGG)n Simple_repeat Simple_repeat 3 47 0 606 301 35 20 chr12 122428557 122428760 -21853729 - MIR SINE MIR -38 224 19 200 333 13 13 chr12 122429029 122429107 -21853382 + MIR SINE MIR 114 191 -71 303 269 111 0 chr12 122429309 122429417 -21853072 + L1ME LINE L1 5676 5795 -375 2645 106 6 82 chr12 122429860 122430351 -21852138 + Tigger1 DNA MER2_type 1511 1964 -454 836 162 45 0 chr12 122430391 122430570 -21851919 - L1MA4 LINE L1 -18 6282 6096 251 295 152 48 chr12 122430768 122430978 -21851511 + MIR SINE MIR 2 233 -29 515 248 124 19 chr12 122430999 122431160 -21851329 + MER5B DNA MER1_type 1 178 0 21 0 0 0 chr12 122431347 122431368 -21851121 + AT_rich Low_complexity Low_complexity 1 21 0 323 289 189 31 chr12 122431578 122431838 -21850651 + L2 LINE L2 2652 2952 -362 528 269 108 32 chr12 122431897 122432083 -21850406 - MIR SINE MIR -43 219 20 3513 136 15 4 chr12 122432364 122432885 -21849604 + MER1A DNA MER1_type 1 527 0 216 298 85 32 chr12 122433770 122433864 -21848625 + MIR SINE MIR 8 106 -156 2121 61 11 8 chr12 122434045 122434306 -21848183 - AluY SINE Alu -11 300 39 485 227 156 32 chr12 122434673 122434827 -21847662 - MIR SINE MIR -10 252 80 330 303 0 56 chr12 122436453 122436595 -21845894 - MIR SINE MIR -120 142 9 869 207 0 0 chr12 122436787 122436932 -21845557 - FRAM SINE Alu -31 145 1 1078 181 70 0 chr12 122437336 122437579 -21844910 - L1MD3 LINE L1 -6 7989 7730 513 242 115 6 chr12 122437726 122437883 -21844606 - MER3 DNA MER1_type -5 204 31 360 270 121 11 chr12 122438006 122438180 -21844309 - L1MC4a LINE L1 -1933 5875 5683 303 202 192 72 chr12 122438529 122438722 -21843767 - MIR SINE MIR -30 232 17 497 214 88 13 chr12 122438761 122438920 -21843569 - L1MD3 LINE L1 -54 7941 7771 200 297 62 0 chr12 122439131 122439195 -21843294 - L2 LINE L2 -215 3057 2990 194 313 104 0 chr12 122439691 122439758 -21842731 + MER5B DNA MER1_type 48 121 -57 277 200 19 29 chr12 122439759 122439864 -21842625 + (TA)n Simple_repeat Simple_repeat 2 105 0 428 253 69 29 chr12 122440123 122440297 -21842192 + MER20B DNA MER1_type 5 185 -598 1019 132 88 13 chr12 122441409 122441568 -21840921 + FRAM SINE Alu 1 169 -7 355 231 51 0 chr12 122441789 122441867 -21840622 + MIR SINE MIR 65 146 -62 212 268 54 0 chr12 122442166 122442222 -21840267 + MIR SINE MIR 124 182 -80 1233 221 58 49 chr12 122442358 122442787 -21839702 + MLT1C LTR MaLR 35 467 0 1308 148 0 14 chr12 122442900 122443109 -21839380 + AluJo SINE Alu 89 294 -18 2510 54 0 3 chr12 122443257 122443554 -21838935 + AluY SINE Alu 1 296 -15 183 279 15 44 chr12 122444143 122444211 -21838278 + MIR SINE MIR 9 74 -188 590 227 136 32 chr12 122444392 122444612 -21837877 + LTR16C LTR ERVL 247 489 -2 230 253 73 133 chr12 122444613 122444763 -21837726 + MIR SINE MIR 76 216 -46 22 0 0 0 chr12 122444772 122444794 -21837695 + AT_rich Low_complexity Low_complexity 1 22 0 462 275 12 81 chr12 122444850 122445010 -21837479 + MIR SINE MIR 44 192 -70 738 213 127 23 chr12 122445094 122445315 -21837174 + MIR SINE MIR 17 260 -2 781 87 40 23 chr12 122445328 122445501 -21836988 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 517 265 45 17 chr12 122445544 122445727 -21836762 + MIR3 SINE MIR 17 205 -3 1891 158 0 44 chr12 122446382 122446698 -21835791 - AluJb SINE Alu -10 302 1 180 302 146 31 chr12 122446752 122446944 -21835545 + L2 LINE L2 2851 3064 -249 694 220 65 104 chr12 122447144 122447329 -21835160 + MER33 DNA MER1_type 2 170 -2415 2109 100 4 14 chr12 122447329 122447610 -21834879 + AluSp SINE Alu 7 284 -29 694 220 65 104 chr12 122447610 122447760 -21834729 + MER33 DNA MER1_type 170 324 0 1851 163 7 0 chr12 122447879 122448179 -21834310 - AluSx SINE Alu -6 306 5 1596 164 25 32 chr12 122448313 122448594 -21833895 + AluJo SINE Alu 13 291 -21 303 177 0 48 chr12 122448703 122448765 -21833724 - L1MCa LINE L1 -4362 2064 2006 676 231 34 46 chr12 122448842 122449080 -21833409 + L1MA9 LINE L1 6019 6253 -59 505 287 42 12 chr12 122449233 122449400 -21833089 + MIR SINE MIR 15 186 -76 541 221 46 15 chr12 122449973 122450104 -21832385 - MIR SINE MIR -21 241 107 405 258 40 24 chr12 122450915 122451039 -21831450 - L2 LINE L2 0 3313 3188 204 40 0 0 chr12 122451108 122451133 -21831356 + (CA)n Simple_repeat Simple_repeat 1 25 0 550 291 101 20 chr12 122451463 122451662 -21830827 + MIR SINE MIR 37 251 -11 369 231 256 12 chr12 122452506 122452666 -21829823 - MIR SINE MIR -58 204 6 485 327 95 21 chr12 122453498 122453825 -21828664 + L2 LINE L2 2920 3270 -43 652 176 0 0 chr12 122454926 122455028 -21827461 - FLAM_A SINE Alu -14 128 27 216 316 292 12 chr12 122455274 122455381 -21827108 - MIR SINE MIR 0 262 186 279 71 0 0 chr12 122455381 122455423 -21827066 + (CA)n Simple_repeat Simple_repeat 1 42 0 216 316 292 12 chr12 122455423 122455486 -21827003 - MIR SINE MIR -76 186 44 340 242 51 118 chr12 122456999 122457064 -21825425 + L1ME LINE L1 5304 5372 -2436 2317 96 3 0 chr12 122457064 122457356 -21825133 + AluSq SINE Alu 1 293 -20 340 242 51 118 chr12 122457356 122457468 -21825021 + L1ME LINE L1 5372 5469 -2339 244 288 119 0 chr12 122457473 122457591 -21824898 + L1ME LINE L1 5483 5614 -507 874 235 70 0 chr12 122457620 122457820 -21824669 + MER58C DNA MER1_type 1 214 -1 261 211 14 14 chr12 122457831 122457902 -21824587 + L1ME LINE L1 5701 5771 -350 454 208 28 0 chr12 122458073 122458179 -21824310 + FRAM SINE Alu 68 176 0 23 0 0 0 chr12 122458430 122458453 -21824036 + AT_rich Low_complexity Low_complexity 1 23 0 686 231 112 0 chr12 122458541 122458710 -21823779 + MER58A DNA MER1_type 8 195 -29 285 287 11 35 chr12 122459390 122459477 -21823012 - MIR SINE MIR -16 246 162 335 287 4 100 chr12 122459483 122459713 -21822776 + MER46C DNA MER2_type 3 210 -128 342 366 8 0 chr12 122459863 122459986 -21822503 - MIR SINE MIR -104 158 35 225 239 30 15 chr12 122460053 122460120 -21822369 + GA-rich Low_complexity Low_complexity 3 70 0 2321 103 13 0 chr12 122460154 122460456 -21822033 + AluSx SINE Alu 1 306 -6 320 311 42 0 chr12 122460629 122460746 -21821743 + MIR SINE MIR 45 165 -65 1550 141 49 19 chr12 122461266 122461529 -21820960 + AluSx SINE Alu 42 312 0 355 263 205 16 chr12 122462200 122462539 -21819950 + L2 LINE L2 2632 3032 -240 604 341 26 9 chr12 122462727 122462956 -21819533 + L2 LINE L2 3079 3311 -2 209 266 0 81 chr12 122463595 122463768 -21818721 + CT-rich Low_complexity Low_complexity 12 170 0 566 332 78 17 chr12 122464059 122464291 -21818198 - MIR SINE MIR -2 260 15 1863 151 3 17 chr12 122464691 122464982 -21817507 - AluJo SINE Alu -25 287 1 239 304 86 36 chr12 122465025 122465245 -21817244 - HAL1b LINE L1 -2 1346 1116 198 304 55 110 chr12 122465333 122465570 -21816919 + L2 LINE L2 3031 3254 -18 727 236 34 6 chr12 122465584 122465762 -21816727 + MER5A DNA MER1_type 3 185 -4 332 274 100 63 chr12 122466217 122466407 -21816082 + MIR SINE MIR 59 255 -7 1864 194 102 13 chr12 122466458 122466911 -21815578 + MLT1D LTR MaLR 13 505 0 320 248 71 26 chr12 122467161 122467274 -21815215 - MIR SINE MIR -64 198 81 185 319 0 0 chr12 122467350 122467397 -21815092 + L2 LINE L2 2709 2755 -559 218 358 102 65 chr12 122467502 122467795 -21814694 + L2 LINE L2 2917 3220 -52 857 246 33 9 chr12 122467847 122468058 -21814431 + MIR SINE MIR 41 256 -6 242 308 0 25 chr12 122468596 122468646 -21813843 + A-rich Low_complexity Low_complexity 4 54 -66 2229 96 3 34 chr12 122468646 122468968 -21813521 + AluSx SINE Alu 1 312 0 242 308 0 25 chr12 122468968 122469037 -21813452 + A-rich Low_complexity Low_complexity 54 120 0 237 319 33 11 chr12 122470421 122470512 -21811977 - MIR SINE MIR -118 144 52 254 215 86 32 chr12 122470593 122470686 -21811803 + MIR SINE MIR 53 150 -112 3916 176 44 6 chr12 122470926 122471266 -21811223 - L1MB8 LINE L1 -1 6177 5851 1897 149 0 32 chr12 122471266 122471575 -21810914 - AluJb SINE Alu -7 305 7 3916 176 44 6 chr12 122471575 122472025 -21810464 - L1MB8 LINE L1 -327 5851 5357 985 246 114 41 chr12 122472539 122472587 -21809902 + MLT1C LTR MaLR 45 88 -379 2523 84 39 22 chr12 122472587 122472945 -21809544 - THE1B LTR MaLR 0 364 1 985 246 114 41 chr12 122472945 122473290 -21809199 + MLT1C LTR MaLR 88 467 0 678 283 83 17 chr12 122473290 122473650 -21808839 - LTR33 LTR ERVL -92 429 46 270 247 11 22 chr12 122473699 122473788 -21808701 + L1MC4a LINE L1 5842 5929 -1879 1753 195 59 8 chr12 122473876 122474250 -21808239 - MLT1C LTR MaLR -61 406 14 1117 162 6 6 chr12 122474619 122474792 -21807697 - AluSx SINE Alu -139 173 1 2018 162 0 0 chr12 122474792 122475100 -21807389 - AluJo SINE Alu -4 308 1 458 245 185 0 chr12 122475116 122475267 -21807222 - MER58A DNA MER1_type 0 224 46 1347 239 49 56 chr12 122475311 122475779 -21806710 - MLT1C LTR MaLR 0 467 3 1735 154 8 4 chr12 122476589 122476855 -21805634 + AluJo SINE Alu 37 303 -9 402 340 25 6 chr12 122477050 122477209 -21805280 + L2 LINE L2 2430 2591 -723 1031 213 93 10 chr12 122477214 122477645 -21804844 - MLT1D LTR MaLR 0 505 3 249 326 61 0 chr12 122477648 122477746 -21804743 + L2 LINE L2 2593 2696 -618 886 301 34 42 chr12 122477817 122478069 -21804420 + L2 LINE L2 2863 3113 -200 2044 94 4 8 chr12 122478069 122478509 -21803980 - AluSc SINE Alu 0 452 14 886 301 34 42 chr12 122478509 122478664 -21803825 + L2 LINE L2 3113 3268 -45 278 270 120 18 chr12 122479010 122479154 -21803335 + L1MC/D LINE L1 5671 5825 -399 4215 182 94 8 chr12 122479155 122479395 -21803094 + L1MC3 LINE L1 6711 6929 -856 2261 88 3 0 chr12 122479395 122479701 -21802788 + AluSq SINE Alu 1 307 0 4215 182 94 8 chr12 122479701 122479835 -21802654 + L1MC3 LINE L1 6929 7050 -735 1941 155 23 3 chr12 122479835 122480139 -21802350 + AluJo SINE Alu 1 310 -2 4215 182 94 8 chr12 122480139 122480745 -21801744 + L1MC3 LINE L1 7050 7777 -8 1973 139 4 0 chr12 122480754 122481027 -21801462 - AluSq SINE Alu -39 274 1 628 219 29 88 chr12 122481153 122481261 -21801228 - L1MC4 LINE L1 -564 7478 7386 2373 88 17 0 chr12 122481261 122481558 -21800931 - AluSc SINE Alu -7 302 1 628 219 29 88 chr12 122481558 122481654 -21800835 - L1MC4 LINE L1 -656 7386 7286 282 241 55 29 chr12 122481749 122481851 -21800638 - MIR SINE MIR -60 148 35 1788 166 0 10 chr12 122482600 122482890 -21799599 - AluJb SINE Alu -14 298 12 548 286 0 54 chr12 122482965 122483112 -21799377 - L2 LINE L2 0 3272 3134 2030 137 20 0 chr12 122483127 122483419 -21799070 + AluSq SINE Alu 1 298 -15 707 255 53 14 chr12 122483762 122483970 -21798519 + MIR SINE MIR 21 236 -26 556 223 163 11 chr12 122483962 122484146 -21798343 - MIR SINE MIR 0 262 51 * 1018 214 96 53 chr12 122484885 122485002 -21797487 + MLT1D LTR MaLR 84 195 -310 2117 150 0 3 chr12 122485002 122485315 -21797174 + AluSx SINE Alu 1 312 0 1018 214 96 53 chr12 122485315 122485594 -21796895 + MLT1D LTR MaLR 195 497 -8 396 181 23 90 chr12 122485710 122485843 -21796646 - LTR33 LTR ERVL -343 178 55 1107 224 12 16 chr12 122486283 122486533 -21795956 + MIR SINE MIR 13 261 -1 1810 141 4 14 chr12 122486554 122486830 -21795659 + AluJb SINE Alu 36 308 -4 449 279 136 7 chr12 122486887 122487041 -21795448 - MIR SINE MIR -77 185 12 230 250 129 14 chr12 122487449 122487589 -21794900 - LTR33 LTR ERVL -37 484 329 484 279 80 16 chr12 122487625 122487876 -21794613 - LTR33 LTR ERVL -245 276 10 291 257 14 14 chr12 122488245 122488319 -21794170 + MIR SINE MIR 45 118 -144 434 135 22 167 chr12 122488348 122488480 -21794009 + MIR SINE MIR 45 164 -66 1923 211 68 7 chr12 122488488 122488928 -21793561 + MLT1C LTR MaLR 1 467 0 428 236 57 8 chr12 122488934 122489057 -21793432 - MLT1G1 LTR MaLR -2 588 460 * 766 212 45 88 chr12 122489026 122489356 -21793133 - MLT1G1 LTR MaLR -239 356 41 1609 137 94 4 chr12 122489717 122489972 -21792517 + AluJo SINE Alu 3 280 -32 191 61 30 0 chr12 122489973 122490006 -21792483 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 536 131 82 49 chr12 122490052 122490174 -21792315 + MLT1B LTR MaLR 4 129 -261 672 278 6 22 chr12 122490479 122490659 -21791830 - MIR SINE MIR -16 246 70 1807 172 0 20 chr12 122490877 122491173 -21791316 - AluJb SINE Alu -22 290 1 594 231 7 42 chr12 122491173 122491316 -21791173 - MIR SINE MIR -102 160 23 301 248 146 36 chr12 122491784 122491921 -21790568 - MIR SINE MIR 0 262 111 2294 125 0 0 chr12 122491976 122492288 -21790201 + AluSx SINE Alu 1 312 0 210 37 0 0 chr12 122492288 122492315 -21790174 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 300 252 72 63 chr12 122493133 122493244 -21789245 + MIR SINE MIR 108 219 -43 631 78 47 0 chr12 122493483 122493611 -21788878 + (TCTA)n Simple_repeat Simple_repeat 2 135 0 36 23 0 0 chr12 122493675 122493718 -21788771 + AT_rich Low_complexity Low_complexity 1 43 0 327 153 321 18 chr12 122494662 122494774 -21787715 + MIR SINE MIR 100 243 -19 215 271 0 57 chr12 122494880 122494950 -21787539 + MIR SINE MIR 95 160 -102 198 349 0 35 chr12 122494932 122495018 -21787471 - MIR3 SINE MIR -23 185 103 * 504 243 58 17 chr12 122495232 122495405 -21787084 - L1ME3A LINE L1 -2 6168 5989 523 228 123 16 chr12 122495439 122495598 -21786891 - MIR SINE MIR -63 145 16 1052 229 105 30 chr12 122495763 122496134 -21786355 - LTR47B LTR ERVL -14 429 31 287 260 55 0 chr12 122496346 122496419 -21786070 - LTR16C LTR ERVL 0 491 415 2353 111 27 41 chr12 122496419 122496745 -21785744 + THE1B LTR MaLR 1 323 -41 2095 132 0 16 chr12 122496745 122497048 -21785441 - AluSx SINE Alu -14 298 1 2353 111 27 41 chr12 122497048 122497090 -21785399 + THE1B LTR MaLR 323 364 0 1756 179 60 56 chr12 122497663 122497754 -21784735 + MLT1C LTR MaLR 1 90 -377 1648 154 30 47 chr12 122497754 122498052 -21784437 + AluJo SINE Alu 1 293 -19 1756 179 60 56 chr12 122498052 122498159 -21784330 + MLT1C LTR MaLR 90 195 -272 270 95 0 0 chr12 122498159 122498201 -21784288 + (CA)n Simple_repeat Simple_repeat 2 43 0 1756 179 60 56 chr12 122498201 122498432 -21784057 + MLT1C LTR MaLR 195 433 -34 1698 151 10 48 chr12 122498432 122498743 -21783746 - AluJo SINE Alu -13 299 1 2091 158 7 0 chr12 122498774 122499084 -21783405 - AluSx SINE Alu 0 312 1 741 275 68 35 chr12 122499754 122500132 -21782357 + LTR16A1 LTR ERVL 90 457 0 835 155 24 121 chr12 122500330 122500490 -21781999 - MER20 DNA MER1_type 0 219 82 1709 144 3 38 chr12 122500490 122500782 -21781707 + AluJo SINE Alu 1 282 -30 835 155 24 121 chr12 122500782 122500828 -21781661 - MER20 DNA MER1_type -137 82 33 600 323 93 8 chr12 122500844 122501208 -21781281 - L2 LINE L2 -250 3022 2612 465 250 18 9 chr12 122501256 122501368 -21781121 - MER63 DNA MER1_type -272 790 678 1035 219 30 50 chr12 122501384 122501592 -21780897 - L1M4 LINE L1 -1917 4229 4027 2022 150 0 3 chr12 122501592 122501892 -21780597 - AluJb SINE Alu -13 299 1 1035 219 30 50 chr12 122501892 122501984 -21780505 - L1M4 LINE L1 -2119 4027 3935 2274 89 7 20 chr12 122501987 122502290 -21780199 + AluSg SINE Alu 1 299 -11 1473 179 117 0 chr12 122502324 122502631 -21779858 + MLT1A1 LTR MaLR 1 343 -22 245 118 0 0 chr12 122502631 122502665 -21779824 + MLT1A1 LTR MaLR 320 353 -12 342 308 77 33 chr12 122502669 122502851 -21779638 - L2 LINE L2 -600 2714 2525 375 271 34 17 chr12 122502891 122503009 -21779480 - LTR16A1 LTR ERVL -103 354 235 342 45 0 0 chr12 122503346 122503390 -21779099 + (TG)n Simple_repeat Simple_repeat 2 45 0 438 226 11 11 chr12 122503418 122503511 -21778978 + MER81 DNA DNA 22 114 0 2267 113 28 28 chr12 122503913 122504277 -21778212 - THE1B LTR MaLR 0 364 1 2381 97 3 7 chr12 122504352 122504660 -21777829 - AluSp SINE Alu -6 307 1 533 258 0 0 chr12 122505701 122505829 -21776660 - LTR16C LTR ERVL 0 491 364 1694 127 42 80 chr12 122505979 122506263 -21776226 - MLT1B LTR MaLR -17 373 80 2144 119 0 3 chr12 122506263 122506549 -21775940 + AluSq SINE Alu 2 286 -27 432 0 0 0 chr12 122506549 122506597 -21775892 + (CA)n Simple_repeat Simple_repeat 2 49 0 1694 127 42 80 chr12 122506597 122506672 -21775817 - MLT1B LTR MaLR -308 82 27 371 234 0 0 chr12 122506668 122506745 -21775744 - FRAM SINE Alu -14 152 76 * 537 215 19 0 chr12 122506763 122506870 -21775619 - FRAM SINE Alu -68 108 1 513 241 101 13 chr12 122507229 122507387 -21775102 + MER5B DNA MER1_type 5 176 -2 315 0 0 0 chr12 122507515 122507579 -21774910 + (CA)n Simple_repeat Simple_repeat 1 99 0 315 0 0 0 chr12 122507579 122507614 -21774875 + (CA)n Simple_repeat Simple_repeat 2 36 0 2195 117 3 3 chr12 122507628 122507927 -21774562 - AluSx SINE Alu -13 299 1 444 294 185 25 chr12 122508072 122508504 -21773985 + LTR33 LTR ERVL 19 519 -2 287 250 0 0 chr12 122508631 122508699 -21773790 + MER113 DNA MER1_type? 334 401 -120 2117 236 15 30 chr12 122508812 122509350 -21773139 - MER74A LTR ERVL -3 555 26 256 279 23 23 chr12 122509839 122509920 -21772569 - MIR SINE MIR -82 126 45 2213 121 0 3 chr12 122509920 122510217 -21772272 - AluSx SINE Alu -16 296 1 433 288 17 0 chr12 122510538 122510656 -21771833 - MIR SINE MIR -29 233 114 1369 204 11 11 chr12 122510804 122511073 -21771416 - AluJo SINE Alu -43 269 1 559 323 55 0 chr12 122511075 122511239 -21771250 - MIR SINE MIR -48 214 42 475 271 100 31 chr12 122511277 122511506 -21770983 + LTR16C LTR ERVL 238 482 -9 292 266 81 24 chr12 122511586 122511710 -21770779 - MIR SINE MIR -36 226 96 1661 181 20 3 chr12 122511770 122512063 -21770426 - AluJb SINE Alu -14 298 1 438 195 0 80 chr12 122512137 122512247 -21770242 + MER20 DNA MER1_type 1 101 -118 720 177 10 89 chr12 122512247 122512450 -21770039 + MLT1E2 LTR MaLR 1 187 -439 259 355 24 16 chr12 122512901 122513025 -21769464 - L2 LINE L2 -213 3059 2935 931 217 79 5 chr12 122513273 122513476 -21769013 + MER20 DNA MER1_type 2 219 0 300 307 9 9 chr12 122514575 122514689 -21767800 - Charlie8 DNA MER1_type -2206 211 98 272 239 114 60 chr12 122515206 122515390 -21767099 - MER112 DNA MER1_type -9 251 58 330 289 204 0 chr12 122515394 122515546 -21766943 - MER63A DNA MER1_type 0 210 28 920 237 130 51 chr12 122515611 122516020 -21766469 - LTR16A LTR ERVL -3 447 7 495 194 85 142 chr12 122516061 122516272 -21766217 + MLT1H LTR MaLR 241 439 -110 1002 62 23 0 chr12 122516318 122516448 -21766041 - L1PA7 LINE L1 -7 6147 6015 1097 163 93 0 chr12 122516448 122516663 -21765826 + L1M3 LINE L1 5582 5816 -518 332 151 19 0 chr12 122516668 122516721 -21765768 + MLT1H LTR MaLR 496 549 0 1819 186 88 2 chr12 122516903 122517302 -21765187 - L1PB4 LINE L1 -3 6153 5721 405 294 170 53 chr12 122517617 122518035 -21764454 + LTR33A LTR ERVL 4 470 -53 205 246 66 49 chr12 122518188 122518249 -21764240 - L2 LINE L2 -60 3253 3192 377 293 84 12 chr12 122518263 122518430 -21764059 + LTR16B LTR ERVL 122 300 -164 586 194 202 0 chr12 122518444 122518573 -21763916 + MER63 DNA MER1_type 5 785 -51 332 320 186 6 chr12 122518816 122519040 -21763449 + L2 LINE L2 2738 2996 -317 1968 149 41 149 chr12 122519113 122519629 -21762860 + LTR32 LTR ERVL 12 471 0 271 236 97 14 chr12 122519664 122519736 -21762753 + L2 LINE L2 3203 3280 -33 370 278 66 56 chr12 122519917 122520115 -21762374 + LTR16C LTR ERVL 102 301 -190 1403 202 72 19 chr12 122520118 122520425 -21762064 - MLT1A1 LTR MaLR -2 363 41 1655 174 73 52 chr12 122520425 122520810 -21761679 + MER57A LTR ERV1 1 393 -10 195 231 26 0 chr12 122522008 122522047 -21760442 - L2 LINE L2 -91 3222 3183 320 269 28 57 chr12 122522292 122522433 -21760056 + L2 LINE L2 2914 3050 -222 741 253 199 10 chr12 122522496 122522793 -21759696 + LTR16A LTR ERVL 93 445 -5 187 245 41 0 chr12 122523733 122523782 -21758707 - MIR SINE MIR -113 149 99 1464 167 109 63 chr12 122524118 122524548 -21757941 + LTR7 LTR ERV1 1 450 0 1249 181 13 25 chr12 122524548 122524976 -21757513 + HERVH LTR ERV1 1 459 -7254 22237 163 22 41 chr12 122525036 122529778 -21752711 + HERVH LTR ERV1 801 5097 -2616 8681 174 19 5 chr12 122529772 122531334 -21751155 + HERVH LTR ERV1 6130 7713 0 * 1432 165 119 72 chr12 122531334 122531764 -21750725 + LTR7 LTR ERV1 1 450 0 203 238 48 0 chr12 122531771 122531834 -21750655 + MIR SINE MIR 73 145 -63 241 250 42 0 chr12 122531905 122531977 -21750512 - MLT1G1 LTR MaLR -42 553 479 1489 194 57 40 chr12 122532964 122533315 -21749174 + LTR10A LTR ERV1 192 548 -61 873 241 65 25 chr12 122533324 122533602 -21748887 + LTR10A-int LTR ERV1 1 289 -6360 32516 216 30 29 chr12 122533664 122540991 -21741498 + LTR10A-int LTR ERV1 487 7767 -18 1738 194 92 62 chr12 122541011 122541543 -21740946 + LTR10A LTR ERV1 1 548 -61 394 289 129 26 chr12 122541832 122542064 -21740425 + LTR16B LTR ERVL 68 323 -141 390 275 72 59 chr12 122543569 122543791 -21738698 - LTR16C LTR ERVL -69 422 198 1616 236 94 5 chr12 122548863 122549299 -21733190 + MER68 LTR ERV1 88 562 0 2113 115 0 3 chr12 122549504 122549808 -21732681 - AluSp SINE Alu -10 303 1 350 261 164 5 chr12 122550169 122550364 -21732125 - L1MEc LINE L1 -3667 2548 2323 226 159 159 0 chr12 122550363 122550407 -21732082 + L1MEc LINE L1 2306 2356 -4040 * 469 216 248 20 chr12 122550439 122550745 -21731744 - L1MEc LINE L1 -4180 2216 1841 243 273 154 0 chr12 122551086 122551196 -21731293 - L1MEc LINE L1 -4888 1327 1201 3871 175 218 1 chr12 122551196 122552134 -21730355 + Tigger3b DNA MER2_type 10 1150 -81 7759 12 15 3 chr12 122552187 122553517 -21728972 - L1PA3 LINE L1 -1 6154 4811 8726 29 1 1 chr12 122553517 122554537 -21727952 + L1PA3 LINE L1 3797 4816 -1330 2240 253 142 24 chr12 122554544 122554686 -21727803 - L1MEc LINE L1 -5382 1014 890 1321 216 18 3 chr12 122554686 122554968 -21727521 - AluJo SINE Alu -26 286 1 2240 253 142 24 chr12 122554968 122555729 -21726760 - L1MEc LINE L1 -5506 890 5 271 313 52 30 chr12 122560019 122560153 -21722336 + ERVL LTR ERVL 4779 4915 -849 9749 181 173 11 chr12 122560227 122560524 -21721965 + Tigger4(Zombi) DNA MER2_type 32 279 -2452 3777 92 0 23 chr12 122560524 122561047 -21721442 + MER9 LTR ERVK 1 511 0 9749 181 173 11 chr12 122561047 122563070 -21719419 + Tigger4(Zombi) DNA MER2_type 279 2729 -2 380 320 94 11 chr12 122563801 122563982 -21718507 + LTR16A LTR ERVL 177 372 -78 1668 109 13 77 chr12 122564437 122564748 -21717741 - AluSx SINE Alu -13 299 9 695 215 16 0 chr12 122564775 122564896 -21717593 - FLAM_C SINE Alu -10 123 1 333 0 60 0 chr12 122565742 122565792 -21716697 + L1PA3 LINE L1 6103 6155 0 613 203 108 14 chr12 122565884 122566032 -21716457 + AluJb SINE Alu 130 291 -21 1522 203 108 133 chr12 122567347 122568305 -21714184 - LTR1B LTR ERV1 0 1020 1 1848 68 20 4 chr12 122569260 122569511 -21712978 - L1PA7 LINE L1 -894 5252 4998 6714 62 29 2 chr12 122569521 122570399 -21712090 + L1PA7 LINE L1 5254 6154 0 256 294 24 12 chr12 122572077 122572162 -21710327 + L1MD3 LINE L1 6727 6812 -1183 855 277 109 19 chr12 122572991 122573312 -21709177 + MLT1A1 LTR MaLR 16 365 0 2044 217 104 26 chr12 122574799 122575492 -21706997 - MER21A LTR ERV1 -56 875 195 279 244 123 85 chr12 122577451 122577923 -21704566 + L1MC5 LINE L1 7382 7871 -90 1274 297 135 22 chr12 122580378 122581022 -21701467 - L1M4b LINE L1 -5904 955 239 1762 153 53 39 chr12 122581407 122581766 -21700723 + THE1B LTR MaLR 1 364 0 1195 124 74 10 chr12 122583072 122583298 -21699191 - L1PBa LINE L1 -4223 2626 2385 546 98 0 24 chr12 122588663 122588745 -21693744 - MADE1 DNA Mariner 0 80 1 866 162 27 0 chr12 122591789 122591937 -21690552 - FRAM SINE Alu -27 149 1 471 286 91 21 chr12 122595029 122595270 -21687219 + L1MC4 LINE L1 6753 7010 -1032 498 328 74 5 chr12 122598405 122598594 -21683895 + LTR16A LTR ERVL 177 378 -72 649 137 0 0 chr12 122599552 122599647 -21682842 + AluS SINE Alu 2 96 -217 621 0 0 0 chr12 122601325 122601394 -21681095 + (TA)n Simple_repeat Simple_repeat 2 70 0 1784 151 14 0 chr12 122601838 122602122 -21680367 - AluSx SINE Alu -24 288 1 206 286 103 40 chr12 122604474 122604600 -21677889 - MIR SINE MIR -127 135 2 194 213 147 40 chr12 122605438 122605513 -21676976 - MIR SINE MIR -70 192 110 570 330 73 24 chr12 122605560 122605848 -21676641 + MLT1J LTR MaLR 6 307 -204 206 243 135 0 chr12 122607653 122607727 -21674762 - MIR SINE MIR -113 149 66 298 291 106 7 chr12 122608190 122608341 -21674148 + LTR33 LTR ERVL 350 515 -6 371 298 43 0 chr12 122608409 122608503 -21673986 - MER45 DNA AcHobo -1483 98 1 316 262 222 0 chr12 122609241 122609367 -21673122 + LTR16B LTR ERVL 311 464 0 197 287 170 21 chr12 122609386 122609480 -21673009 - MIR SINE MIR -134 128 21 208 281 281 0 chr12 122612295 122612384 -21670105 + MIR SINE MIR 32 145 -63 648 238 184 10 chr12 122615348 122615646 -21666843 - L1MD3 LINE L1 -70 7925 7333 186 296 159 0 chr12 122616721 122616809 -21665680 + L3 LINE CR1 1413 1514 -63 4033 71 28 6 chr12 122619058 122619604 -21662885 - L1PA7 LINE L1 -223 5931 5374 1583 100 41 0 chr12 122619604 122619815 -21662674 + L1PA7 LINE L1 5907 6135 -19 1717 152 83 40 chr12 122619942 122620291 -21662198 + THE1B LTR MaLR 1 364 0 339 272 168 15 chr12 122621873 122622018 -21660471 + L1MEc LINE L1 2210 2413 -3793 239 171 0 0 chr12 122625214 122625255 -21657234 - L1M4 LINE L1 -3800 2346 2306 185 269 173 29 chr12 122629965 122630069 -21652420 - L2 LINE L2 -27 3245 3127 261 250 74 37 chr12 122630808 122630916 -21651573 + L1ME LINE L1 5538 5649 -472 252 0 0 0 chr12 122631812 122631840 -21650649 + (T)n Simple_repeat Simple_repeat 1 28 0 186 189 0 75 chr12 122633335 122633388 -21649101 + L2 LINE L2 3101 3149 -164 186 308 92 0 chr12 122633432 122633497 -21648992 + L2 LINE L2 3198 3268 -4 1367 176 199 28 chr12 122635518 122635915 -21646574 + MLT1E3 LTR MaLR 153 617 -7 181 282 114 47 chr12 122637083 122637232 -21645257 + L2 LINE L2 2834 2992 -321 249 190 66 116 chr12 122637882 122638003 -21644486 + MIR3 SINE MIR 89 203 -5 208 286 260 11 chr12 122638685 122638954 -21643535 + L2 LINE L2 2360 2695 -619 338 338 108 0 chr12 122639095 122639243 -21643246 + L2 LINE L2 2911 3074 -239 286 81 0 0 chr12 122641102 122641139 -21641350 + LTR32 LTR ERVL 32 68 -403 1565 192 114 47 chr12 122641139 122641399 -21641090 + LTR32 LTR ERVL 15 317 -154 1990 106 3 10 chr12 122641399 122641691 -21640798 - AluSg SINE Alu -20 290 1 1565 192 114 47 chr12 122641691 122641858 -21640631 + LTR32 LTR ERVL 317 471 0 518 185 136 115 chr12 122642892 122643178 -21639311 + MER51A LTR ERV1 348 639 -1 705 275 46 27 chr12 122643670 122643932 -21638557 + MER51-int LTR ERV1 625 891 -6925 301 270 102 35 chr12 122644675 122644901 -21637588 + MER51-int LTR ERV1 2336 2576 -4100 1057 323 103 34 chr12 122645877 122647236 -21635253 + MER51-int LTR ERV1 4798 6250 -1506 421 308 25 0 chr12 122647480 122647600 -21634889 + MER51-int LTR ERV1 7690 7812 -4 492 238 161 26 chr12 122647828 122648021 -21634468 + MER51C LTR ERV1 422 640 0 2741 97 82 10 chr12 122648421 122648835 -21633654 + MLT2A1 LTR ERVL 1 444 0 488 231 135 13 chr12 122649005 122649161 -21633328 + L1PB4 LINE L1 5945 6119 -37 341 190 105 3 chr12 122650700 122650804 -21631685 - MIR SINE MIR -56 152 38 2086 123 7 0 chr12 122651912 122652213 -21630276 + AluSx SINE Alu 1 303 -9 251 300 50 0 chr12 122652221 122652301 -21630188 - MER94 DNA DNA -35 99 16 635 246 97 26 chr12 122652695 122652890 -21629599 + MIR SINE MIR 43 251 -11 312 261 49 78 chr12 122653002 122653056 -21629433 - MIR SINE MIR -96 166 112 2026 125 0 0 chr12 122653056 122653351 -21629138 + AluSx SINE Alu 7 301 -11 312 261 49 78 chr12 122653351 122653438 -21629051 - MIR SINE MIR -150 112 29 557 189 0 119 chr12 122653816 122653959 -21628530 + L2 LINE L2 3188 3313 0 772 257 17 0 chr12 122654171 122654346 -21628143 + MIR SINE MIR 82 259 -3 728 290 61 16 chr12 122655490 122655735 -21626754 - MIR SINE MIR 0 262 7 944 211 22 5 chr12 122656200 122656385 -21626104 - MER58A DNA MER1_type 0 224 37 310 214 7 172 chr12 122656663 122656808 -21625681 - MIR SINE MIR -114 148 28 627 253 95 21 chr12 122657139 122657329 -21625160 + MIR SINE MIR 48 251 -11 568 267 40 7 chr12 122657476 122657626 -21624863 - MER5A DNA MER1_type 0 189 35 233 298 137 36 chr12 122657673 122657841 -21624648 - L2 LINE L2 -529 2785 2601 364 313 175 6 chr12 122658047 122658207 -21624282 - MIR SINE MIR -45 217 31 327 229 0 14 chr12 122658373 122658443 -21624046 - MLT1J2 LTR MaLR -122 328 260 667 281 220 21 chr12 122658644 122659250 -21623239 + L2 LINE L2 2597 3307 -6 364 258 114 30 chr12 122659224 122659356 -21623133 - MIR SINE MIR -100 162 20 * 806 237 82 48 chr12 122659890 122660206 -21622283 + LTR33 LTR ERVL 1 327 -194 358 188 313 9 chr12 122660469 122660581 -21621908 - L2 LINE L2 -9 3304 3159 257 173 12 99 chr12 122660673 122660704 -21621785 + MIR3 SINE MIR 129 161 -47 2043 127 0 7 chr12 122660704 122661011 -21621478 - AluSq SINE Alu -8 305 1 257 173 12 99 chr12 122661011 122661060 -21621429 + MIR3 SINE MIR 161 202 -6 276 111 0 0 chr12 122661898 122661934 -21620555 + U2 snRNA snRNA 1 36 -152 227 270 189 27 chr12 122661962 122662073 -21620416 - LTR33 LTR ERVL -19 502 374 2017 210 101 13 chr12 122662092 122662549 -21619940 + MLT1D LTR MaLR 9 505 0 269 313 108 0 chr12 122662595 122662761 -21619728 - LTR33 LTR ERVL -235 286 103 592 363 13 9 chr12 122662979 122663205 -21619284 + MIR SINE MIR 32 258 -4 1571 179 83 97 chr12 122663315 122663808 -21618681 + L1MD3 LINE L1 7510 7995 0 403 164 18 55 chr12 122664308 122664444 -21618045 - Alu SINE Alu -257 51 1 1018 278 127 31 chr12 122665113 122665288 -21617201 - LTR16A1 LTR ERVL 0 457 300 2233 121 134 8 chr12 122665288 122665668 -21616821 + MSTA LTR MaLR 1 428 0 1018 278 127 31 chr12 122665668 122665909 -21616580 - LTR16A1 LTR ERVL -157 300 1 742 241 105 8 chr12 122665960 122666170 -21616319 - MLT1G1 LTR MaLR -363 212 1 468 280 144 88 chr12 122666171 122666722 -21615767 - L1MEd LINE L1 -3969 2160 1629 2245 68 0 3 chr12 122666778 122667106 -21615383 - AluY SINE Alu 0 327 1 348 316 9 3 chr12 122667121 122667283 -21615206 - HAL1b LINE L1 -858 490 399 550 297 43 31 chr12 122667453 122668001 -21614488 - L1MEd LINE L1 -4896 1223 670 778 228 0 0 chr12 122668282 122668431 -21614058 - MER45B DNA AcHobo -838 202 54 4404 214 26 28 chr12 122668588 122668953 -21613536 + MER45B DNA AcHobo 55 419 -1162 1435 164 23 93 chr12 122668953 122669263 -21613226 + AluJo SINE Alu 1 288 -24 4404 214 26 28 chr12 122669263 122669885 -21612604 + MER45B DNA AcHobo 419 1040 0 467 326 12 45 chr12 122671054 122671299 -21611190 + MIR SINE MIR 20 256 -6 353 282 197 5 chr12 122671400 122671588 -21610901 + MIR SINE MIR 1 224 -38 457 283 136 36 chr12 122671611 122672064 -21610425 + L2 LINE L2 2580 3079 -193 1975 174 65 34 chr12 122672065 122672478 -21610011 + MSTB LTR MaLR 1 426 0 1594 260 18 8 chr12 122672736 122673128 -21609361 + MSTD LTR MaLR 1 396 0 1058 282 20 4 chr12 122673189 122673441 -21609048 + LTR16C LTR ERVL 193 448 -43 240 214 0 0 chr12 122673435 122673477 -21609012 - 5S rRNA rRNA -79 42 1 * 282 242 0 16 chr12 122673477 122673539 -21608950 + LTR16C LTR ERVL 431 491 0 191 294 15 44 chr12 122673547 122673615 -21608874 + L2 LINE L2 3246 3311 -2 213 245 0 0 chr12 122673704 122673753 -21608736 + MIR SINE MIR 94 142 -66 1265 168 0 14 chr12 122673809 122674029 -21608460 + MER20 DNA MER1_type 3 219 0 235 268 0 42 chr12 122674188 122674259 -21608230 + MER104 DNA Tc2 46 113 -67 736 208 39 6 chr12 122675077 122675255 -21607234 - MER5A DNA MER1_type -5 184 1 241 235 51 31 chr12 122675518 122675616 -21606873 - MIR SINE MIR -52 210 111 204 75 38 38 chr12 122676003 122676056 -21606433 + T-rich Low_complexity Low_complexity 3 55 0 243 0 0 0 chr12 122676096 122676123 -21606366 + (T)n Simple_repeat Simple_repeat 1 27 0 408 306 57 38 chr12 122676460 122676669 -21605820 + MLT1J LTR MaLR 247 459 -52 983 286 92 35 chr12 122676839 122677352 -21605137 - L2 LINE L2 -1 3312 2779 240 216 80 45 chr12 122677436 122677524 -21604965 + L2 LINE L2 3223 3313 0 255 176 191 0 chr12 122677568 122677636 -21604853 + MIR SINE MIR 70 150 -112 1638 73 0 0 chr12 122677658 122677863 -21604626 + L1PA6 LINE L1 5941 6145 -9 470 215 62 15 chr12 122677919 122678049 -21604440 - MIR SINE MIR -88 174 39 278 306 160 0 chr12 122679280 122679424 -21603065 - MIR SINE MIR -3 259 93 296 339 43 0 chr12 122679525 122679640 -21602849 - L2 LINE L2 -1 3312 3193 611 309 48 30 chr12 122679753 122680083 -21602406 - LTR16C LTR ERVL 0 491 156 337 148 16 16 chr12 122680261 122680322 -21602167 - MLT1I LTR MaLR 0 409 349 447 332 32 11 chr12 122680356 122680546 -21601943 - MIR SINE MIR -51 211 18 914 288 90 19 chr12 122680789 122681167 -21601322 + MLT1I LTR MaLR 2 406 -3 668 351 104 10 chr12 122681192 122681585 -21600904 - LTR16A LTR ERVL 0 450 21 327 303 92 16 chr12 122681669 122681854 -21600635 - LTR67 LTR ERVL -2 555 357 394 268 34 105 chr12 122681992 122682201 -21600288 - LTR67 LTR ERVL -357 200 7 228 208 0 0 chr12 122682551 122682599 -21599890 - L2 LINE L2 0 3272 3225 578 276 69 10 chr12 122682740 122682943 -21599546 + MIR SINE MIR 48 262 0 2239 109 3 0 chr12 122683184 122683478 -21599011 - AluSx SINE Alu -16 296 2 445 204 0 0 chr12 122683492 122683585 -21598904 + MER5A DNA MER1_type 3 95 -94 450 258 0 23 chr12 122684106 122684234 -21598255 + L2 LINE L2 3189 3313 0 201 219 23 40 chr12 122684972 122685194 -21597295 + GA-rich Low_complexity Low_complexity 1 218 0 1546 187 55 99 chr12 122685194 122685343 -21597146 + LTR33A LTR ERVL 12 166 -357 492 48 0 0 chr12 122685343 122685406 -21597083 + (TC)n Simple_repeat Simple_repeat 2 64 0 1546 187 55 99 chr12 122685406 122685743 -21596746 + LTR33A LTR ERVL 166 477 -46 192 77 0 0 chr12 122685752 122685778 -21596711 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 874 214 227 13 chr12 122685835 122686073 -21596416 + AluJo SINE Alu 1 289 -13 815 180 73 0 chr12 122686282 122686432 -21596057 - FRAM SINE Alu -1 175 15 793 195 0 100 chr12 122686681 122686891 -21595598 - MER5A DNA MER1_type 0 189 1 275 297 27 18 chr12 122687004 122687115 -21595374 - MIR SINE MIR -128 134 23 462 260 75 0 chr12 122687171 122687317 -21595172 + MIR SINE MIR 41 197 -65 1692 116 165 0 chr12 122687744 122688011 -21594478 + AluJb SINE Alu 1 311 -1 390 196 10 52 chr12 122688302 122688399 -21594090 + ORSL DNA AcHobo 1 93 -182 21 36 0 0 chr12 122688402 122688430 -21594059 + AT_rich Low_complexity Low_complexity 1 28 0 357 180 34 11 chr12 122688504 122688593 -21593896 + ORSL DNA AcHobo 140 230 -45 190 214 24 0 chr12 122688608 122688650 -21593839 + L2 LINE L2 3186 3228 -85 292 195 0 24 chr12 122689410 122689492 -21592997 + GA-rich Low_complexity Low_complexity 2 81 0 405 262 34 34 chr12 122689530 122689679 -21592810 - MIR SINE MIR 0 262 114 293 275 107 47 chr12 122689680 122689829 -21592660 - MIR SINE MIR -104 158 1 270 216 112 32 chr12 122689896 122690009 -21592480 - MLT1I LTR MaLR -22 573 281 1127 191 9 14 chr12 122690533 122690753 -21591736 + MER20 DNA MER1_type 1 219 0 197 294 47 47 chr12 122690800 122690885 -21591604 - MER5A DNA MER1_type -50 139 55 366 264 104 52 chr12 122691774 122691986 -21590503 + L1ME LINE L1 5560 5782 -339 872 159 6 6 chr12 122692138 122692308 -21590181 - L1M LINE L1 -874 5426 5257 369 304 128 26 chr12 122692769 122693121 -21589368 - L2 LINE L2 -800 2514 2127 306 353 8 8 chr12 122694063 122694196 -21588293 + L3 LINE CR1 1406 1538 -39 355 236 129 36 chr12 122694412 122694552 -21587937 - Charlie8 DNA MER1_type -2264 153 1 538 306 107 0 chr12 122694588 122694784 -21587705 + MIR SINE MIR 46 262 0 499 194 160 6 chr12 122695190 122695341 -21587148 - MER5A DNA MER1_type -8 181 4 337 253 71 10 chr12 122695494 122695593 -21586896 - MIR SINE MIR -108 154 50 2359 108 0 3 chr12 122695602 122695907 -21586582 + AluSx SINE Alu 1 304 -8 301 215 21 0 chr12 122696015 122696108 -21586381 + CT-rich Low_complexity Low_complexity 3 97 0 333 0 0 0 chr12 122696321 122696358 -21586131 + (CA)n Simple_repeat Simple_repeat 1 37 0 240 372 23 12 chr12 122696648 122696820 -21585669 - MIR3 SINE MIR -20 188 15 649 257 30 20 chr12 122697830 122698032 -21584457 + MIR SINE MIR 28 231 -31 755 292 44 34 chr12 122698117 122698415 -21584074 - MLT1J LTR MaLR 0 511 211 365 247 145 6 chr12 122698419 122698585 -21583904 + MER53 DNA DNA 1 189 0 * 751 260 26 0 chr12 122698585 122698774 -21583715 - MLT1J LTR MaLR -294 217 24 325 260 40 0 chr12 122698927 122699027 -21583462 - MIR SINE MIR -78 184 81 191 305 0 74 chr12 122699139 122699201 -21583288 + L2 LINE L2 3226 3280 -33 1650 244 96 20 chr12 122699201 122699751 -21582738 - MLT1E LTR MaLR -1 592 1 191 305 0 74 chr12 122699751 122699783 -21582706 + L2 LINE L2 3280 3313 0 1544 84 70 0 chr12 122699803 122700017 -21582472 - MER30 DNA MER1_type 0 230 2 541 167 0 0 chr12 122700657 122700741 -21581748 - AluSg/x SINE Alu -18 291 208 446 196 23 8 chr12 122700846 122700979 -21581510 + CT-rich Low_complexity Low_complexity 1 135 0 458 182 9 0 chr12 122700992 122701102 -21581387 + (TCCA)n Simple_repeat Simple_repeat 1 111 0 1001 204 96 22 chr12 122701542 122701803 -21580686 + LTR33 LTR ERVL 1 254 -269 2048 155 6 14 chr12 122701854 122702203 -21580286 + MLT2C1 LTR ERVL 1 346 -51 530 210 17 6 chr12 122702215 122702391 -21580098 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 299 202 11 0 chr12 122702406 122702495 -21579994 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 563 220 6 0 chr12 122702509 122702677 -21579812 + (TAGA)n Simple_repeat Simple_repeat 3 171 0 237 162 0 0 chr12 122702682 122702719 -21579770 + MLT2C1 LTR ERVL 518 554 0 488 306 31 0 chr12 122702719 122702879 -21579610 + LTR33 LTR ERVL 356 520 -1 181 297 78 0 chr12 122702880 122702944 -21579545 + L2 LINE L2 2213 2281 -1033 837 279 85 33 chr12 122703199 122703622 -21578867 - L2 LINE L2 -18 3295 2851 523 311 147 24 chr12 122703618 122704256 -21578233 + L2 LINE L2 2541 3267 -5 * 395 281 41 0 chr12 122704703 122704824 -21577665 + MIR SINE MIR 15 140 -122 458 269 9 0 chr12 122704824 122704932 -21577557 + MER69 DNA AcHobo 18 126 -2400 363 65 0 0 chr12 122704943 122704989 -21577500 + L1PA10 LINE L1 5746 5791 -377 2778 79 22 0 chr12 122705172 122705538 -21576951 + L1PA10 LINE L1 5789 6162 -6 302 92 169 31 chr12 122705549 122705614 -21576875 + MER69 DNA AcHobo 2446 2519 -7 350 256 0 23 chr12 122705647 122705733 -21576756 + MIR SINE MIR 179 262 0 238 358 0 0 chr12 122705782 122705891 -21576598 - LTR67 LTR ERVL -23 534 426 1812 178 117 10 chr12 122706496 122706890 -21575599 + MER63B DNA MER1_type 1 436 0 192 244 0 0 chr12 122706928 122706973 -21575516 + MIR SINE MIR 62 106 -156 597 289 59 59 chr12 122707011 122707250 -21575239 - MIR SINE MIR -21 241 3 197 217 81 136 chr12 122707250 122707407 -21575082 + MIR SINE MIR 106 250 -12 1147 235 131 33 chr12 122707861 122708312 -21574177 + LTR33 LTR ERVL 14 508 -13 198 216 0 0 chr12 122708320 122708357 -21574132 + MIR SINE MIR 109 145 -63 309 224 63 42 chr12 122709792 122709935 -21572554 + L1MC5 LINE L1 7788 7933 -28 435 292 174 5 chr12 122710149 122710344 -21572145 + MIR SINE MIR 9 236 -26 434 291 67 12 chr12 122710391 122710556 -21571933 + MLT1K LTR MaLR 40 213 -375 288 197 92 0 chr12 122710545 122710621 -21571868 + MLT1K LTR MaLR 106 188 -400 * 274 212 76 0 chr12 122710631 122710697 -21571792 + MLT1K LTR MaLR 108 178 -410 259 204 151 11 chr12 122710715 122710808 -21571681 + MLT1K LTR MaLR 108 213 -375 376 275 210 57 chr12 122710898 122711302 -21571187 + MLT1K LTR MaLR 123 588 0 1164 214 27 167 chr12 122711762 122711976 -21570513 - MLT1G LTR MaLR -2 528 286 1960 102 16 0 chr12 122711976 122712231 -21570258 - AluSx SINE Alu -5 307 49 1164 214 27 167 chr12 122712231 122712729 -21569760 - MLT1G LTR MaLR -244 286 1 642 295 29 0 chr12 122712765 122712975 -21569514 - MIR SINE MIR -1 261 46 244 229 43 0 chr12 122713175 122713245 -21569244 - MIR3 SINE MIR -52 156 84 232 316 43 21 chr12 122713934 122714121 -21568368 + L1MC/D LINE L1 5635 5825 -1983 659 214 95 6 chr12 122714173 122714341 -21568148 - LTR33 LTR ERVL -8 513 331 547 212 129 0 chr12 122714346 122714478 -21568011 - LTR33 LTR ERVL -372 149 1 263 286 0 0 chr12 122714702 122714800 -21567689 + (TA)n Simple_repeat Simple_repeat 1 98 0 251 208 0 9 chr12 122714863 122714969 -21567520 + (TA)n Simple_repeat Simple_repeat 2 106 0 277 289 70 23 chr12 122716172 122716300 -21566189 + MIR SINE MIR 20 153 -109 195 125 0 0 chr12 122716380 122716420 -21566069 + (T)n Simple_repeat Simple_repeat 1 40 0 383 241 36 29 chr12 122717175 122717312 -21565177 + L2 LINE L2 3171 3308 -5 249 234 15 15 chr12 122717419 122717487 -21565002 + MIR SINE MIR 56 124 -84 895 303 36 32 chr12 122717739 122718214 -21564275 - L1ME3A LINE L1 -199 5971 5495 21 0 0 0 chr12 122718467 122718488 -21564001 + AT_rich Low_complexity Low_complexity 1 21 0 337 323 30 0 chr12 122718572 122718705 -21563784 - MIR SINE MIR -42 220 84 3177 139 76 28 chr12 122718875 122719231 -21563258 - LTR49 LTR ERV1 0 595 201 2840 83 11 3 chr12 122719231 122719603 -21562886 + THE1C LTR MaLR 1 375 0 3177 139 76 28 chr12 122719603 122719814 -21562675 - LTR49 LTR ERV1 -394 201 1 1224 229 121 76 chr12 122720084 122720556 -21561933 - LTR33 LTR ERVL 0 521 29 843 279 96 30 chr12 122721222 122721587 -21560902 + LTR16A LTR ERVL 62 450 0 806 246 5 5 chr12 122721590 122721777 -21560712 + MIR SINE MIR 76 262 0 741 271 27 16 chr12 122721892 122722080 -21560409 + LTR33 LTR ERVL 8 197 -324 188 296 19 0 chr12 122722378 122722432 -21560057 - L2 LINE L2 -6 3266 3212 1330 245 104 8 chr12 122723442 122723818 -21558671 - MLT1J LTR MaLR -16 495 84 212 381 0 0 chr12 122723866 122723950 -21558539 + MIR SINE MIR 2 85 -177 1154 233 23 0 chr12 122724310 122724529 -21557960 - MER58A DNA MER1_type 0 224 1 1261 186 107 24 chr12 122724650 122724988 -21557501 - MER69 DNA AcHobo 0 2526 2161 * 1362 213 114 18 chr12 122724986 122725410 -21557079 - MER69 DNA AcHobo -2010 516 1 1163 280 63 6 chr12 122726356 122726688 -21555801 - MLT1J LTR MaLR -158 353 3 462 301 74 77 chr12 122726838 122726898 -21555591 - L2 LINE L2 -88 3225 3166 2109 136 13 0 chr12 122726898 122727206 -21555283 + AluJb SINE Alu 1 312 0 462 301 74 77 chr12 122727206 122727392 -21555097 - L2 LINE L2 -147 3166 2981 1977 112 0 0 chr12 122727392 122727693 -21554796 + AluSc SINE Alu 20 320 0 462 301 74 77 chr12 122727693 122727929 -21554560 - L2 LINE L2 -332 2981 2747 209 261 76 22 chr12 122728142 122728234 -21554255 - MIR SINE MIR -114 148 52 472 273 111 20 chr12 122728413 122728754 -21553735 - L1ME4a LINE L1 -12 6109 5738 236 318 16 58 chr12 122728757 122728946 -21553543 + L2 LINE L2 2776 2954 -318 835 292 83 42 chr12 122729274 122729634 -21552855 + LTR33 LTR ERVL 1 375 -146 2364 256 71 7 chr12 122729634 122730224 -21552265 + MLT2E LTR ERVL 1 628 0 2864 180 22 22 chr12 122730318 122730867 -21551622 - MER44D DNA MER2_type -1 604 1 814 223 17 6 chr12 122730879 122731054 -21551435 + MLT1J LTR MaLR 1 177 -334 498 274 54 12 chr12 122731045 122731213 -21551276 + MLT1J LTR MaLR 337 511 0 * 276 218 0 0 chr12 122731499 122731554 -21550935 + MIR SINE MIR 28 82 -180 343 322 34 53 chr12 122732543 122732751 -21549738 + MIR SINE MIR 49 252 -10 249 247 100 55 chr12 122732774 122733045 -21549444 + L1M4c LINE L1 2017 2299 -4085 291 222 62 0 chr12 122734026 122734107 -21548382 + MIR SINE MIR 48 133 -129 183 341 73 78 chr12 122734250 122734429 -21548060 + L2 LINE L2 3024 3201 -71 548 320 0 10 chr12 122734519 122734719 -21547770 + MIR SINE MIR 17 214 -48 292 286 102 0 chr12 122734721 122734819 -21547670 - L2 LINE L2 -3 3269 3162 297 191 12 36 chr12 122735501 122735585 -21546904 + MIR SINE MIR 66 147 -61 280 222 341 8 chr12 122735764 122735890 -21546599 - MER5B DNA MER1_type -2 176 9 565 266 50 15 chr12 122736015 122736214 -21546275 + MIR SINE MIR 48 253 -9 882 228 5 5 chr12 122736274 122736463 -21546026 - MER5A DNA MER1_type 0 189 1 458 259 43 31 chr12 122736579 122736741 -21545748 - MIR3 SINE MIR -2 206 43 318 266 36 17 chr12 122736974 122737090 -21545399 + L1ME LINE L1 5461 5575 -546 1069 207 9 9 chr12 122737113 122737335 -21545154 + MER96B DNA MER1_type? 196 417 0 31 58 0 0 chr12 122737577 122737629 -21544860 + AT_rich Low_complexity Low_complexity 1 52 0 1008 209 74 83 chr12 122737736 122738086 -21544403 - MLT1H LTR MaLR -146 403 57 236 108 62 31 chr12 122738197 122738262 -21544227 + (TTAA)n Simple_repeat Simple_repeat 4 70 0 21 36 0 0 chr12 122739072 122739100 -21543389 + AT_rich Low_complexity Low_complexity 1 28 0 1001 196 0 25 chr12 122739111 122739310 -21543179 + L1PB4 LINE L1 5961 6154 -2 233 376 40 29 chr12 122740535 122740708 -21541781 + L2 LINE L2 2896 3070 -202 270 0 0 0 chr12 122741928 122741958 -21540531 + (CA)n Simple_repeat Simple_repeat 2 31 0 404 281 44 25 chr12 122742065 122742225 -21540264 + MIR SINE MIR 59 221 -41 2423 74 0 3 chr12 122742371 122742667 -21539822 + AluY SINE Alu 1 295 -16 1119 214 5 9 chr12 122742766 122742990 -21539499 - MER58A DNA MER1_type -1 223 1 1218 146 87 9 chr12 122743030 122743350 -21539139 - MSTB1 LTR MaLR 0 432 1 251 149 68 68 chr12 122743360 122743434 -21539055 - MIR SINE MIR -70 192 119 183 80 0 0 chr12 122744533 122744558 -21537931 + (A)n Simple_repeat Simple_repeat 1 25 0 703 189 0 27 chr12 122744577 122744725 -21537764 - MER103 DNA DNA -1 165 22 2748 129 29 2 chr12 122745835 122746253 -21536236 + MER57B LTR ERV1 6 434 0 1115 218 171 69 chr12 122746347 122746838 -21535651 - MLT1F LTR MaLR -1 541 1 334 233 39 48 chr12 122747783 122747886 -21534603 - MER5B DNA MER1_type -3 175 74 1150 192 32 62 chr12 122747886 122748212 -21534277 + L1ME2 LINE L1 5838 6157 -9 253 250 14 0 chr12 122748253 122748325 -21534164 + L1MC4 LINE L1 7830 7902 -140 222 192 0 0 chr12 122748341 122748393 -21534096 + (TGGA)n Simple_repeat Simple_repeat 2 53 0 235 319 35 17 chr12 122748396 122748512 -21533977 + L1MC4 LINE L1 7924 8041 -1 479 279 38 11 chr12 122748679 122748862 -21533627 + MER5A DNA MER1_type 2 189 0 5119 138 29 72 chr12 122748875 122749209 -21533280 + L1MA9 LINE L1 5275 5622 -690 1770 181 0 7 chr12 122749209 122749502 -21532987 + AluJo SINE Alu 1 291 -21 5119 138 29 72 chr12 122749502 122750094 -21532395 + L1MA9 LINE L1 5622 6150 -162 198 91 0 0 chr12 122750094 122750127 -21532362 + (TA)n Simple_repeat Simple_repeat 2 34 0 5119 138 29 72 chr12 122750127 122750284 -21532205 + L1MA9 LINE L1 6150 6312 0 1448 178 0 94 chr12 122750846 122751166 -21531323 - AluJo SINE Alu -21 291 2 181 0 0 0 chr12 122751855 122751877 -21530612 + MIR SINE MIR 82 103 -105 368 269 172 41 chr12 122751980 122752066 -21530423 + MLT1G3 LTR MaLR 1 74 -481 1629 102 0 5 chr12 122752066 122752314 -21530175 - AluSq SINE Alu 0 320 74 368 269 172 41 chr12 122752314 122752672 -21529817 + MLT1G3 LTR MaLR 74 490 -65 230 182 23 0 chr12 122752984 122753028 -21529461 + MLT1G3 LTR MaLR 498 542 0 320 215 38 0 chr12 122753034 122753113 -21529376 - MIR SINE MIR -66 196 115 235 218 154 39 chr12 122753208 122753286 -21529203 + L2 LINE L2 3186 3272 0 301 245 10 41 chr12 122753317 122753415 -21529074 + MIR3 SINE MIR 111 205 -3 305 265 0 10 chr12 122753798 122753896 -21528593 + MER113 DNA MER1_type? 3 99 -422 207 139 0 0 chr12 122753910 122753946 -21528543 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 1493 178 31 39 chr12 122754026 122754312 -21528177 + AluJo SINE Alu 22 305 -7 541 280 16 27 chr12 122755010 122755196 -21527293 - MIR SINE MIR -50 212 29 1184 173 5 0 chr12 122755566 122755763 -21526726 + AluJb SINE Alu 83 280 -32 189 0 0 0 chr12 122755763 122755784 -21526705 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1662 156 19 42 chr12 122755833 122755968 -21526521 + AluJb SINE Alu 1 138 -174 2208 111 7 0 chr12 122755968 122756275 -21526214 + AluSx SINE Alu 1 309 -3 1662 156 19 42 chr12 122756275 122756446 -21526043 + AluJb SINE Alu 138 300 -12 203 340 46 41 chr12 122756636 122756830 -21525659 - L2 LINE L2 -179 3093 2899 199 289 21 52 chr12 122757001 122757098 -21525391 - L2 LINE L2 -599 2715 2622 930 177 0 24 chr12 122757716 122757880 -21524609 - FRAM SINE Alu -7 169 10 446 0 19 0 chr12 122758164 122758218 -21524271 + (CA)n Simple_repeat Simple_repeat 2 56 0 666 258 175 31 chr12 122759928 122760274 -21522215 + MER113 DNA MER1_type? 9 434 -87 1995 137 3 34 chr12 122760274 122760596 -21521893 + AluSq SINE Alu 1 312 -1 666 258 175 31 chr12 122760596 122760694 -21521795 + MER113 DNA MER1_type? 434 517 -4 21 36 0 0 chr12 122760801 122760829 -21521660 + AT_rich Low_complexity Low_complexity 1 28 0 2440 167 7 2 chr12 122760887 122761301 -21521188 + L1MC1 LINE L1 5908 6323 -10 1785 153 3 39 chr12 122761301 122761609 -21520880 - AluJo SINE Alu -15 297 1 2172 124 3 0 chr12 122761612 122761918 -21520571 - AluSx SINE Alu -5 307 1 730 251 0 18 chr12 122761928 122762095 -21520394 - AluJb SINE Alu -4 308 145 22 0 0 0 chr12 122762109 122762131 -21520358 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr12 122762137 122762181 -21520308 + (TG)n Simple_repeat Simple_repeat 2 45 0 847 105 7 77 chr12 122762205 122762348 -21520141 - FLAM_C SINE Alu 0 133 1 2249 118 3 0 chr12 122762387 122762692 -21519797 - AluSx SINE Alu -6 306 1 1959 121 3 14 chr12 122762937 122763256 -21519233 + AluSg SINE Alu 1 316 0 363 327 94 14 chr12 122763256 122763492 -21518997 - L2 LINE L2 -276 2996 2747 230 300 77 31 chr12 122763705 122763835 -21518654 - MIR SINE MIR -114 148 13 472 273 111 20 chr12 122763976 122764317 -21518172 - L1ME4a LINE L1 -12 6109 5738 366 242 0 2 chr12 122764613 122764720 -21517769 + L1P LINE L1 4782 4887 -1259 2259 135 0 0 chr12 122764720 122765031 -21517458 + AluSx SINE Alu 1 311 -1 2068 140 0 3 chr12 122765696 122766004 -21516485 + AluJb SINE Alu 1 307 -5 259 286 52 0 chr12 122766117 122766194 -21516295 + L1ME4a LINE L1 5532 5612 -509 235 274 98 46 chr12 122766204 122766357 -21516132 + L1ME4a LINE L1 5961 6121 0 492 257 195 4 chr12 122766403 122766629 -21515860 + L1ME4a LINE L1 5631 5899 -222 1358 163 0 0 chr12 122767030 122767233 -21515256 + AluJb SINE Alu 1 203 -109 308 69 81 40 chr12 122767233 122767406 -21515083 + (TA)n Simple_repeat Simple_repeat 1 180 0 495 44 100 12 chr12 122767422 122767582 -21514907 + (TA)n Simple_repeat Simple_repeat 1 174 0 207 0 0 0 chr12 122767583 122767606 -21514883 + (CA)n Simple_repeat Simple_repeat 2 24 0 441 193 46 0 chr12 122767629 122767738 -21514751 - MER53 DNA DNA -33 156 43 829 168 0 0 chr12 122767741 122767872 -21514617 + FLAM_A SINE Alu 3 133 0 207 0 0 0 chr12 122768315 122768338 -21514151 + (CA)n Simple_repeat Simple_repeat 2 24 0 325 256 139 0 chr12 122768510 122768639 -21513850 - MIR SINE MIR -12 250 104 261 267 27 0 chr12 122768651 122768726 -21513763 + MIR SINE MIR 174 250 -12 305 276 59 59 chr12 122768794 122768946 -21513543 - MIR SINE MIR 0 262 111 561 244 95 6 chr12 122769871 122770039 -21512450 - MER5A DNA MER1_type -6 183 1 2008 111 90 0 chr12 122770101 122770380 -21512109 - AluSx SINE Alu -8 304 1 356 0 23 0 chr12 122770598 122770642 -21511847 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 191 352 48 0 chr12 122771301 122771406 -21511083 - L2 LINE L2 -222 3050 2941 705 291 167 54 chr12 122771964 122772425 -21510064 - MLT1K LTR MaLR -74 514 2 2426 107 0 0 chr12 122772575 122772885 -21509604 + AluSg SINE Alu 1 310 0 410 194 0 20 chr12 122772890 122772988 -21509501 + GA-rich Low_complexity Low_complexity 3 98 0 192 211 158 13 chr12 122774601 122774677 -21507812 - MIR SINE MIR -175 87 1 235 195 0 0 chr12 122774752 122774793 -21507696 + Charlie7 DNA MER1_type 47 87 -2525 234 203 31 70 chr12 122774795 122774879 -21507610 + Charlie7 DNA MER1_type 2441 2527 -85 351 44 0 0 chr12 122774879 122774924 -21507565 + (TG)n Simple_repeat Simple_repeat 2 46 0 198 0 0 0 chr12 122774923 122774945 -21507544 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 234 203 31 70 chr12 122774924 122774988 -21507501 + Charlie7 DNA MER1_type 2527 2563 -49 1651 173 11 7 chr12 122775019 122775303 -21507186 + AluJb SINE Alu 1 285 -27 1203 272 22 34 chr12 122775306 122775721 -21506768 + L1ME3A LINE L1 5753 6162 -8 289 203 0 14 chr12 122775753 122775820 -21506669 + MLT1G LTR MaLR 72 137 -412 412 343 8 22 chr12 122775820 122776088 -21506401 - LTR16B LTR ERVL 0 464 129 642 222 52 158 chr12 122776238 122776752 -21505737 + MLT1G LTR MaLR 130 589 -1 373 299 144 6 chr12 122776906 122777080 -21505409 + MIR SINE MIR 64 261 -1 5023 122 20 8 chr12 122777993 122778787 -21503702 - L1PA16 LINE L1 0 6166 5363 266 229 0 33 chr12 122778787 122778848 -21503641 + MIR SINE MIR 204 262 0 1582 218 117 12 chr12 122779532 122779959 -21502530 + MLT1H LTR MaLR 5 476 -73 1051 246 4 16 chr12 122780126 122780374 -21502115 - MIR SINE MIR 0 262 18 454 313 30 15 chr12 122780423 122780621 -21501868 + MIR SINE MIR 61 261 -1 247 289 124 0 chr12 122781428 122781525 -21500964 + LTR16A LTR ERVL 3 111 -339 311 274 74 21 chr12 122781946 122782041 -21500448 - MIR SINE MIR -71 191 92 719 287 76 4 chr12 122782178 122782415 -21500074 + MIR SINE MIR 2 255 -7 262 206 11 109 chr12 122782713 122782805 -21499684 - MIR3 SINE MIR -48 160 78 2659 188 45 19 chr12 122783387 122783915 -21498574 + MLT1F LTR MaLR 1 542 0 243 357 20 10 chr12 122783918 122784016 -21498473 - L2 LINE L2 -27 3245 3147 813 252 99 72 chr12 122784194 122784285 -21498204 + L1ME4a LINE L1 5523 5610 -511 1547 150 20 103 chr12 122784285 122784626 -21497863 + AluYb8 SINE Alu 6 318 0 813 252 99 72 chr12 122784626 122785101 -21497388 + L1ME4a LINE L1 5610 6104 -17 350 283 128 55 chr12 122786006 122786296 -21496193 - L2 LINE L2 0 3313 3003 926 157 13 13 chr12 122787133 122787292 -21495197 + FRAM SINE Alu 1 159 -17 661 156 0 0 chr12 122787335 122787444 -21495045 + FRAM SINE Alu 54 162 -14 328 326 32 59 chr12 122788039 122788226 -21494263 + MIR SINE MIR 4 185 -77 203 277 40 30 chr12 122788311 122788412 -21494077 + MIR SINE MIR 151 252 -10 246 23 70 0 chr12 122788872 122788915 -21493574 + CT-rich Low_complexity Low_complexity 1 46 0 540 182 91 28 chr12 122789392 122789535 -21492954 - MIR SINE MIR -72 190 39 215 250 19 74 chr12 122789622 122789730 -21492759 - MIR SINE MIR -121 141 40 2070 164 0 0 chr12 122789777 122790089 -21492400 + AluJb SINE Alu 1 312 0 572 342 0 17 chr12 122790165 122790402 -21492087 + MIR SINE MIR 17 249 -13 2001 143 4 0 chr12 122790442 122790722 -21491767 + AluSx SINE Alu 1 281 -31 246 32 0 0 chr12 122790725 122790756 -21491733 + (TAA)n Simple_repeat Simple_repeat 3 33 0 22 35 0 0 chr12 122790972 122791001 -21491488 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr12 122791016 122791044 -21491445 + (TA)n Simple_repeat Simple_repeat 1 28 0 1047 282 114 28 chr12 122791121 122791832 -21490657 + L2 LINE L2 2514 3308 -5 285 235 0 0 chr12 122791893 122791961 -21490528 + L2 LINE L2 3245 3312 -1 1574 287 47 7 chr12 122792390 122792836 -21489653 - MLT1J LTR MaLR 0 511 48 606 215 164 11 chr12 122792903 122793080 -21489409 - MIR SINE MIR 0 262 59 353 265 0 0 chr12 122793277 122793360 -21489129 + L2 LINE L2 3223 3305 -8 279 219 56 140 chr12 122793389 122793567 -21488922 + L2 LINE L2 3108 3270 -2 270 320 74 10 chr12 122794480 122794683 -21487806 + L2 LINE L2 2836 3051 -221 716 276 58 4 chr12 122795393 122795650 -21486839 + L2 LINE L2 2681 2951 -363 450 320 78 43 chr12 122795753 122796075 -21486414 + L2 LINE L2 2964 3296 -17 195 273 227 0 chr12 122796090 122796178 -21486311 - L2 LINE L2 -5 3267 3160 192 256 58 12 chr12 122796426 122796512 -21485977 - L2 LINE L2 -502 2812 2723 1738 191 19 33 chr12 122796532 122796894 -21485595 - MLT1A1 LTR MaLR -8 357 1 803 285 117 7 chr12 122797047 122797345 -21485144 + MLT1J LTR MaLR 9 339 -172 834 267 67 67 chr12 122797853 122798374 -21484115 - LTR33A LTR ERVL -2 521 1 21 0 0 0 chr12 122799041 122799062 -21483427 + AT_rich Low_complexity Low_complexity 1 21 0 545 178 14 7 chr12 122799410 122799534 -21482955 - MER5A DNA MER1_type -61 128 5 243 180 66 16 chr12 122799560 122799621 -21482868 + Charlie7 DNA MER1_type 32 95 -2517 1957 86 30 4 chr12 122799681 122799950 -21482539 - L1PA10 LINE L1 -9 6159 5884 713 188 0 23 chr12 122800018 122800151 -21482338 - FLAM_A SINE Alu -3 130 1 370 256 196 0 chr12 122800527 122800660 -21481829 - MIR SINE MIR -17 245 87 311 284 31 31 chr12 122801049 122801176 -21481313 - MIR SINE MIR -25 237 111 485 258 3 10 chr12 122801735 122802124 -21480365 + (TG)n Simple_repeat Simple_repeat 1 385 0 472 320 0 6 chr12 122802149 122802327 -21480162 + (TG)n Simple_repeat Simple_repeat 2 178 0 600 332 36 8 chr12 122802485 122802738 -21479751 + MIR SINE MIR 1 260 -2 1196 276 108 9 chr12 122802921 122803377 -21479112 - LTR33 LTR ERVL -18 503 3 2374 93 0 0 chr12 122803483 122803785 -21478704 + AluSc SINE Alu 1 302 -7 514 177 172 96 chr12 122803898 122804096 -21478393 - MLT1J LTR MaLR -143 368 156 304 265 0 49 chr12 122804222 122804324 -21478165 + MIR SINE MIR 25 121 -87 382 298 12 13 chr12 122804438 122804602 -21477887 - MLT1I LTR MaLR -238 171 63 365 311 79 32 chr12 122804693 122804883 -21477606 - MIR SINE MIR -63 199 1 1152 284 60 50 chr12 122805206 122805643 -21476846 + LTR16C LTR ERVL 50 490 -1 269 299 82 41 chr12 122806527 122806674 -21475815 + MIR SINE MIR 98 250 -12 207 159 23 0 chr12 122807178 122807222 -21475267 + MIR SINE MIR 95 139 -123 571 277 76 13 chr12 122807308 122807532 -21474957 - MIR SINE MIR -12 250 13 554 234 176 70 chr12 122808307 122808619 -21473870 + L2 LINE L2 2969 3313 0 354 279 93 29 chr12 122808876 122809048 -21473441 + MIR SINE MIR 8 190 -72 28 71 0 24 chr12 122809163 122809207 -21473282 + AT_rich Low_complexity Low_complexity 1 44 -39 1301 33 0 0 chr12 122809207 122809359 -21473130 - L1PA3 LINE L1 0 6155 6004 28 71 0 24 chr12 122809359 122809399 -21473090 + AT_rich Low_complexity Low_complexity 44 83 0 342 221 106 19 chr12 122809838 122809942 -21472547 - L2 LINE L2 -18 3295 3183 969 250 75 22 chr12 122810219 122810585 -21471904 + LTR16A LTR ERVL 23 450 0 204 229 21 0 chr12 122810597 122810645 -21471844 + L2 LINE L2 3262 3310 -3 283 216 0 0 chr12 122810646 122810697 -21471792 - MLT1K LTR MaLR 0 588 538 300 309 79 8 chr12 122810740 122810866 -21471623 - MLT1K LTR MaLR -143 445 311 1638 198 0 11 chr12 122810918 122811201 -21471288 + AluJb SINE Alu 3 282 -30 1139 140 29 5 chr12 122811211 122811418 -21471071 - L1MA8 LINE L1 -18 6273 6062 782 275 70 35 chr12 122811425 122811709 -21470780 - MLT1K LTR MaLR -272 316 23 200 355 26 59 chr12 122811953 122812105 -21470384 + L2 LINE L2 3014 3160 -112 600 302 49 29 chr12 122812399 122812644 -21469845 - MIR SINE MIR -12 250 1 256 231 33 74 chr12 122812644 122812758 -21469731 - MIR SINE MIR -70 192 84 186 43 0 0 chr12 122813258 122813281 -21469208 + (CCCCCG)n Simple_repeat Simple_repeat 5 27 0 439 210 110 37 chr12 122813835 122814126 -21468363 + MLT1J2 LTR MaLR 90 401 -8 301 282 105 24 chr12 122814348 122814472 -21468017 + MIR SINE MIR 6 139 -123 745 293 54 34 chr12 122814529 122814768 -21467721 + LTR16A LTR ERVL 25 268 -182 1422 238 92 14 chr12 122814768 122815249 -21467240 + MLT1E LTR MaLR 1 591 -2 527 223 0 85 chr12 122815252 122815298 -21467191 + LTR16A LTR ERVL 265 313 -137 1834 146 4 0 chr12 122815298 122815565 -21466924 + AluSx SINE Alu 40 307 -5 527 223 0 85 chr12 122815565 122815648 -21466841 + LTR16A LTR ERVL 313 383 -67 757 176 0 63 chr12 122815648 122815790 -21466699 - MSTD LTR MaLR 0 396 264 756 165 31 0 chr12 122815812 122815939 -21466550 - MSTD LTR MaLR -297 131 1 364 206 59 0 chr12 122815939 122816007 -21466482 + LTR16A LTR ERVL 379 450 0 225 255 0 0 chr12 122816128 122816175 -21466314 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 561 76 0 0 chr12 122816197 122816276 -21466213 + (TGGA)n Simple_repeat Simple_repeat 3 81 0 304 312 9 0 chr12 122816589 122816698 -21465791 + MIR3 SINE MIR 66 175 -33 630 249 50 146 chr12 122816810 122816856 -21465633 - MLT1L LTR MaLR -112 484 435 2690 142 41 2 chr12 122816856 122817299 -21465190 - L1PA16 LINE L1 0 6166 5707 630 249 50 146 chr12 122817299 122817573 -21464916 - MLT1L LTR MaLR -161 435 110 566 300 38 16 chr12 122818023 122818353 -21464136 + L2 LINE L2 2725 3059 -213 924 253 37 4 chr12 122818480 122818721 -21463768 + MIR SINE MIR 3 251 -11 25 31 0 0 chr12 122818726 122818758 -21463731 + AT_rich Low_complexity Low_complexity 1 32 0 286 206 29 15 chr12 122818769 122818837 -21463652 + L2 LINE L2 3245 3313 0 197 232 85 49 chr12 122818858 122818940 -21463549 + L2 LINE L2 3210 3294 -19 204 40 0 0 chr12 122819163 122819188 -21463301 + (GA)n Simple_repeat Simple_repeat 2 26 0 1809 142 0 65 chr12 122819501 122819824 -21462665 - AluJo SINE Alu -8 304 3 2512 67 7 0 chr12 122819865 122820163 -21462326 - AluY SINE Alu -11 300 1 257 262 153 55 chr12 122820417 122820600 -21461889 - L1MC4a LINE L1 -1859 5949 5749 376 262 32 16 chr12 122820631 122820757 -21461732 + MER5B DNA MER1_type 39 166 -12 241 259 0 0 chr12 122820785 122820843 -21461646 - L1MC4a LINE L1 -354 5767 5710 1020 211 0 9 chr12 122820915 122821133 -21461356 - MER20 DNA MER1_type -3 216 1 616 120 0 0 chr12 122821186 122821294 -21461195 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2113 129 7 13 chr12 122821294 122821603 -21460886 - AluSx SINE Alu 0 418 4 287 176 0 29 chr12 122821915 122821983 -21460506 + CT-rich Low_complexity Low_complexity 3 68 0 254 323 36 5 chr12 122822808 122822927 -21459562 - MIR SINE MIR -83 125 44 2012 119 0 17 chr12 122822947 122823241 -21459248 + AluSx SINE Alu 5 293 -19 5809 131 35 4 chr12 122823265 122824374 -21458115 + L1PA16 LINE L1 4879 6029 -137 180 0 0 0 chr12 122824374 122824394 -21458095 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 5809 131 35 4 chr12 122824394 122824525 -21457964 + L1PA16 LINE L1 6029 6154 -12 229 333 22 37 chr12 122825466 122825601 -21456888 + GA-rich Low_complexity Low_complexity 5 137 0 830 203 0 7 chr12 122826055 122826208 -21456281 + AluJb SINE Alu 148 299 -13 2153 110 0 58 chr12 122826502 122826637 -21455852 + AluSx SINE Alu 3 144 -168 2146 123 0 3 chr12 122826637 122826939 -21455550 + AluSg SINE Alu 1 301 -9 2153 110 0 58 chr12 122826939 122827130 -21455359 + AluSx SINE Alu 144 310 -2 725 188 0 15 chr12 122827133 122827266 -21455223 + FLAM_A SINE Alu 1 131 -2 206 292 15 0 chr12 122827955 122828020 -21454469 - MIR SINE MIR -21 241 176 1297 265 64 24 chr12 122828193 122828574 -21453915 + LTR16C LTR ERVL 52 453 -38 1707 162 0 65 chr12 122828574 122828895 -21453594 + AluJb SINE Alu 1 300 -12 1297 265 64 24 chr12 122828895 122828936 -21453553 + LTR16C LTR ERVL 453 491 0 2156 113 0 3 chr12 122828981 122829273 -21453216 + AluSx SINE Alu 1 291 -21 3425 83 15 8 chr12 122829429 122829901 -21452588 + L1PA13 LINE L1 5672 6146 -17 1523 98 0 10 chr12 122829901 122830105 -21452384 - AluSq SINE Alu -20 293 92 1676 237 51 20 chr12 122830354 122830594 -21451895 + MLT1C LTR MaLR 6 268 -199 2192 160 11 78 chr12 122830594 122831057 -21451432 - MSTB1 LTR MaLR 0 432 1 1676 237 51 20 chr12 122831057 122831264 -21451225 + MLT1C LTR MaLR 268 467 0 2173 118 0 0 chr12 122831333 122831629 -21450860 - AluSx SINE Alu -16 296 1 232 186 0 0 chr12 122831724 122831767 -21450722 + tRNA-Gly-GGA tRNA tRNA 3 45 -30 309 258 146 0 chr12 122831989 122832078 -21450411 + L2 LINE L2 3171 3272 0 736 207 59 114 chr12 122832397 122832468 -21450021 - L1MB7 LINE L1 0 6184 6111 1866 138 10 3 chr12 122832468 122832758 -21449731 + AluSx SINE Alu 1 292 -20 736 207 59 114 chr12 122832758 122832957 -21449532 - L1MB7 LINE L1 -73 6111 5929 1425 250 80 67 chr12 122833483 122833710 -21448779 + MLT1E3 LTR MaLR 6 229 -395 1541 192 28 7 chr12 122833710 122834001 -21448488 + AluJb SINE Alu 1 297 -15 1425 250 80 67 chr12 122834001 122834384 -21448105 + MLT1E3 LTR MaLR 229 624 0 1053 153 6 1 chr12 122834684 122834865 -21447624 + L1MB8 LINE L1 5353 5532 -624 1136 197 5 0 chr12 122834865 122835063 -21447426 + MER2 DNA MER2_type 1 199 -146 289 231 0 0 chr12 122835112 122835164 -21447325 + MER2 DNA MER2_type 285 336 -9 2587 187 33 18 chr12 122835172 122835771 -21446718 + L1MB8 LINE L1 5531 6138 -40 338 336 18 0 chr12 122836914 122837024 -21445465 + MER5B DNA MER1_type 1 112 -66 349 217 0 0 chr12 122837037 122837177 -21445312 - AluJ/monomer SINE Alu 0 373 234 628 166 29 72 chr12 122837315 122837454 -21445035 - MER20 DNA MER1_type -86 133 1 1945 155 3 10 chr12 122837480 122837789 -21444700 - AluJb SINE Alu -2 310 4 298 286 36 0 chr12 122838216 122838300 -21444189 + MER58 DNA MER1_type 7 93 -2327 615 212 0 0 chr12 122838331 122838449 -21444040 - FLAM_C SINE Alu -15 118 1 231 184 138 0 chr12 122838450 122838537 -21443952 + MER58 DNA MER1_type 83 181 -160 218 266 106 0 chr12 122839037 122839131 -21443358 + MIR SINE MIR 126 229 -33 252 298 67 10 chr12 122839204 122839308 -21443181 - MIR SINE MIR -103 159 50 964 170 0 0 chr12 122839911 122840058 -21442431 + AluJb SINE Alu 136 282 -30 186 43 0 0 chr12 122840064 122840087 -21442402 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 565 246 123 58 chr12 122840094 122840268 -21442221 - HAL1b LINE L1 -435 913 711 789 134 70 19 chr12 122840268 122840425 -21442064 - L1MA8 LINE L1 -6 6285 6121 565 246 123 58 chr12 122840425 122840543 -21441946 - HAL1b LINE L1 -637 711 602 359 284 76 76 chr12 122840575 122840731 -21441758 - L1MC/D LINE L1 -2083 5725 5567 1686 174 0 47 chr12 122840731 122841048 -21441441 - AluJb SINE Alu -10 302 1 359 284 76 76 chr12 122841048 122841166 -21441323 - L1MC/D LINE L1 -2240 5568 5451 453 266 118 25 chr12 122841176 122841379 -21441110 + MIR SINE MIR 15 236 -26 2171 121 3 26 chr12 122841638 122841985 -21440504 + THE1C LTR MaLR 1 339 -36 1248 137 39 0 chr12 122842005 122842187 -21440302 - AluSx SINE Alu -123 189 1 278 146 0 0 chr12 122842187 122842228 -21440261 + THE1C LTR MaLR 388 428 0 414 295 30 54 chr12 122843080 122843123 -21439366 + MIR SINE MIR 80 123 -139 1279 158 169 19 chr12 122843123 122843383 -21439106 - AluJo SINE Alu -3 299 1 414 295 30 54 chr12 122843383 122843505 -21438984 + MIR SINE MIR 123 241 -21 292 302 40 40 chr12 122843540 122843689 -21438800 - MIR SINE MIR -56 206 58 358 219 0 24 chr12 122844253 122844335 -21438154 + MER116 DNA Mariner 1 80 0 203 244 0 0 chr12 122844530 122844575 -21437914 - MIR SINE MIR -139 123 79 2582 207 37 28 chr12 122844815 122845355 -21437134 - MLT2B3 LTR ERVL -9 545 1 2168 199 29 31 chr12 122845615 122846102 -21436387 + MER66B LTR ERV1 1 486 0 2131 109 0 3 chr12 122846396 122846680 -21435809 + AluSq SINE Alu 1 283 -30 482 49 110 6 chr12 122846698 122846861 -21435628 + (TA)n Simple_repeat Simple_repeat 1 180 0 403 94 65 29 chr12 122846844 122847014 -21435475 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 * 1634 177 25 18 chr12 122847253 122847563 -21434926 - AluJo SINE Alu 0 312 1 394 252 99 60 chr12 122847609 122847838 -21434651 - L1MC4a LINE L1 -311 5810 5663 2829 116 57 21 chr12 122847846 122848322 -21434167 - L1PA16 LINE L1 -4 6162 5670 2413 97 10 0 chr12 122848347 122848655 -21433834 + AluY SINE Alu 1 311 0 1079 172 11 0 chr12 122848668 122848842 -21433647 + AluJb SINE Alu 137 312 0 482 171 0 0 chr12 122848909 122848991 -21433498 + LTR16C LTR ERVL 400 481 -10 218 341 41 24 chr12 122849165 122849288 -21433201 + MIR SINE MIR 19 143 -65 870 168 0 40 chr12 122849355 122849504 -21432985 + AluJo SINE Alu 1 143 -169 1715 119 25 4 chr12 122849512 122849755 -21432734 - AluSq SINE Alu -65 248 1 1190 247 31 14 chr12 122849828 122850006 -21432483 - AluJb SINE Alu -1 301 115 261 0 0 0 chr12 122850006 122850035 -21432454 + (TG)n Simple_repeat Simple_repeat 2 30 0 1190 247 31 14 chr12 122850035 122850148 -21432341 - AluJb SINE Alu -187 115 5 2371 83 0 3 chr12 122850366 122850667 -21431822 - AluY SINE Alu -11 300 1 1607 159 44 34 chr12 122851474 122851769 -21430720 - AluJo SINE Alu -10 302 5 1825 243 41 21 chr12 122851829 122852340 -21430149 - L1ME3 LINE L1 -186 5976 5456 29 0 0 0 chr12 122853073 122853102 -21429387 + AT_rich Low_complexity Low_complexity 1 29 0 285 228 0 0 chr12 122853259 122853338 -21429151 + (TA)n Simple_repeat Simple_repeat 1 79 0 280 280 6 6 chr12 122853365 122853522 -21428967 + (TATATG)n Simple_repeat Simple_repeat 4 160 0 2130 128 0 16 chr12 122854717 122855023 -21427466 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr12 122855051 122855074 -21427415 + AT_rich Low_complexity Low_complexity 1 23 0 2625 46 0 3 chr12 122855249 122855553 -21426936 - AluY SINE Alu -8 303 1 225 196 0 0 chr12 122855885 122855941 -21426548 + (TGAA)n Simple_repeat Simple_repeat 1 56 0 320 271 0 12 chr12 122856205 122856290 -21426199 - MIR SINE MIR -108 154 71 1720 173 7 10 chr12 122856529 122856818 -21425671 + AluJb SINE Alu 1 288 -24 430 319 108 5 chr12 122856837 122857041 -21425448 + MIR SINE MIR 6 230 -32 27 0 0 0 chr12 122857083 122857110 -21425379 + AT_rich Low_complexity Low_complexity 1 27 0 1742 120 10 73 chr12 122857118 122857465 -21425024 + AluJo SINE Alu 1 328 0 287 299 56 19 chr12 122857506 122857613 -21424876 + MIR SINE MIR 36 146 -62 334 265 10 7 chr12 122858127 122858242 -21424247 - MIR SINE MIR -65 143 32 438 240 89 7 chr12 122858242 122858388 -21424101 - MER106B DNA MER1_type 0 1059 902 2187 121 13 0 chr12 122858398 122858703 -21423786 + AluSx SINE Alu 1 309 -3 1877 147 3 3 chr12 122859871 122860157 -21422332 - AluSx SINE Alu -26 286 1 1744 181 0 11 chr12 122860308 122860623 -21421866 - AluJo SINE Alu 0 312 1 253 267 76 46 chr12 122860641 122860762 -21421727 + MIR SINE MIR 70 197 -65 1833 160 3 16 chr12 122860762 122861069 -21421420 + AluJo SINE Alu 1 303 -9 1125 182 49 154 chr12 122861079 122861629 -21420860 + L1MC5 LINE L1 7100 7591 -370 1055 163 0 0 chr12 122861640 122861800 -21420689 - AluJb SINE Alu -17 295 136 1143 56 0 0 chr12 122861876 122862020 -21420469 + L1PA4 LINE L1 6009 6152 -3 2585 101 0 33 chr12 122862097 122862463 -21420026 - MER1A DNA MER1_type 0 529 176 366 87 0 0 chr12 122862464 122862510 -21419979 + Alu SINE Alu 1 46 -256 1370 121 5 0 chr12 122862510 122862700 -21419789 + AluSg/x SINE Alu 110 300 -12 1173 160 6 0 chr12 122862700 122862881 -21419608 - MER1A DNA MER1_type -344 183 2 687 76 29 29 chr12 122862886 122862991 -21419498 + L1MC1 LINE L1 6019 6123 -210 661 186 88 37 chr12 122863002 122863217 -21419272 + L1MC5 LINE L1 7687 7912 -49 2026 147 16 3 chr12 122863252 122863559 -21418930 + AluSx SINE Alu 1 311 -1 913 156 0 56 chr12 122863617 122863777 -21418712 + AluJo SINE Alu 1 151 -161 209 184 0 0 chr12 122863800 122863838 -21418651 + (CA)n Simple_repeat Simple_repeat 2 39 0 1061 198 36 11 chr12 122864326 122864572 -21417917 + L1PA5 LINE L1 5594 5849 -305 1648 50 0 0 chr12 122865410 122865609 -21416880 + L1PA5 LINE L1 5956 6154 0 24 32 0 0 chr12 122865889 122865920 -21416569 + AT_rich Low_complexity Low_complexity 1 31 0 2251 96 10 13 chr12 122865923 122866226 -21416263 + AluSg SINE Alu 1 302 -8 206 286 12 24 chr12 122866650 122866734 -21415755 - L2 LINE L2 -667 2647 2565 205 254 96 0 chr12 122866778 122866868 -21415621 - MER5A DNA MER1_type -83 106 6 257 230 40 14 chr12 122866954 122867028 -21415461 + MIR SINE MIR 117 192 -70 203 270 15 15 chr12 122867581 122867685 -21414804 - MIR SINE MIR -54 208 106 1205 172 0 0 chr12 122867693 122867885 -21414604 + AluJo SINE Alu 1 192 -120 2406 83 0 0 chr12 122867932 122868220 -21414269 + AluSg1 SINE Alu 1 288 -21 812 207 28 0 chr12 122868426 122868605 -21413884 - L1M4 LINE L1 -464 5714 5531 289 231 0 0 chr12 122868613 122868665 -21413824 - MER2 DNA MER2_type -9 336 285 1136 197 5 0 chr12 122868714 122868912 -21413577 - MER2 DNA MER2_type -146 199 1 1039 159 6 1 chr12 122868912 122869093 -21413396 - L1P5 LINE L1 -624 5532 5353 1429 246 82 69 chr12 122869393 122869776 -21412713 - MLT1E3 LTR MaLR 0 624 229 1541 192 28 7 chr12 122869776 122870067 -21412422 - AluJb SINE Alu -15 297 1 1429 246 82 69 chr12 122870067 122870294 -21412195 - MLT1E3 LTR MaLR -395 229 6 716 210 59 114 chr12 122870820 122871019 -21411470 + L1MB7 LINE L1 5929 6111 -73 1853 141 10 3 chr12 122871019 122871309 -21411180 - AluSx SINE Alu -20 292 1 716 210 59 114 chr12 122871309 122871380 -21411109 + L1MB7 LINE L1 6111 6184 0 346 258 146 0 chr12 122871699 122871788 -21410701 - L2 LINE L2 0 3272 3171 232 186 0 0 chr12 122872010 122872053 -21410436 - tRNA-Gly-GGA tRNA tRNA -30 45 3 2194 118 0 0 chr12 122872148 122872444 -21410045 + AluSx SINE Alu 1 296 -16 1579 237 51 20 chr12 122872513 122872720 -21409769 - MLT1C LTR MaLR 0 467 268 2247 160 11 78 chr12 122872720 122873183 -21409306 + MSTB1 LTR MaLR 1 432 0 1579 237 51 20 chr12 122873183 122873423 -21409066 - MLT1C LTR MaLR -199 268 6 1398 122 0 10 chr12 122873674 122873870 -21408619 + AluSq SINE Alu 92 285 -28 2204 141 0 0 chr12 122874025 122874337 -21408152 + AluSx SINE Alu 1 312 0 583 283 0 0 chr12 122874841 122874979 -21407510 + MIR SINE MIR 36 173 -89 1693 177 7 0 chr12 122875097 122875380 -21407109 + AluJb SINE Alu 12 296 -16 198 327 60 60 chr12 122875384 122875552 -21406937 + MIR3 SINE MIR 11 178 -30 2379 172 79 15 chr12 122875632 122876161 -21406328 - L1MD2 LINE L1 -2 6357 5795 1961 158 3 13 chr12 122876625 122876929 -21405560 - AluJb SINE Alu -11 301 1 554 140 11 0 chr12 122877586 122877679 -21404810 - AluSg/x SINE Alu 0 310 217 297 128 0 0 chr12 122877747 122877794 -21404695 + (TG)n Simple_repeat Simple_repeat 2 48 0 237 135 42 21 chr12 122877818 122877914 -21404575 + (TA)n Simple_repeat Simple_repeat 2 99 0 2008 115 7 31 chr12 122878618 122878906 -21403583 - AluSc SINE Alu -21 288 8 237 287 0 58 chr12 122879023 122879117 -21403372 - MIR SINE MIR -63 145 58 538 236 8 8 chr12 122879383 122879506 -21402983 + MIR SINE MIR 76 198 -64 228 141 94 82 chr12 122879499 122879584 -21402905 - MIR SINE MIR -3 259 174 * 23 0 0 0 chr12 122879691 122879714 -21402775 + AT_rich Low_complexity Low_complexity 1 23 0 1953 130 35 0 chr12 122879722 122880007 -21402482 + AluSx SINE Alu 5 299 -13 1254 60 0 22 chr12 122880392 122880576 -21401913 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 884 140 0 32 chr12 122880577 122880763 -21401726 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2149 133 7 0 chr12 122880767 122881067 -21401422 - AluSx SINE Alu -10 302 1 234 240 19 19 chr12 122881080 122881184 -21401305 + CT-rich Low_complexity Low_complexity 1 104 0 292 298 67 10 chr12 122881597 122881701 -21400788 + MIR SINE MIR 50 159 -103 266 296 93 0 chr12 122881760 122881868 -21400621 - MIR SINE MIR -19 243 126 1419 169 90 50 chr12 122882236 122882515 -21399974 + AluJo SINE Alu 13 302 -10 24 32 0 0 chr12 122882535 122882566 -21399923 + AT_rich Low_complexity Low_complexity 1 31 0 2159 113 40 3 chr12 122882678 122882979 -21399510 + AluSx SINE Alu 1 312 0 2145 97 14 3 chr12 122882986 122883275 -21399214 + AluSc SINE Alu 1 292 -17 2307 73 14 0 chr12 122883742 122884029 -21398460 + AluSp SINE Alu 1 291 -22 2106 111 7 0 chr12 122884833 122885112 -21397377 - AluSx SINE Alu -31 281 1 536 298 22 28 chr12 122885382 122885560 -21396929 + L2 LINE L2 3137 3313 0 249 139 0 0 chr12 122885560 122885603 -21396886 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 1883 162 0 0 chr12 122885897 122886168 -21396321 + AluSx SINE Alu 7 277 -35 198 103 0 0 chr12 122886182 122886211 -21396278 + (GGGGA)n Simple_repeat Simple_repeat 2 30 0 1848 154 43 0 chr12 122886702 122887001 -21395488 - AluJb SINE Alu 0 312 1 197 204 0 23 chr12 122887129 122887173 -21395316 - MER5B DNA MER1_type -16 162 120 418 271 15 80 chr12 122887181 122887380 -21395109 + AluJb SINE Alu 16 201 -111 1876 77 4 4 chr12 122887509 122887744 -21394745 - AluSc SINE Alu -74 235 1 275 206 21 21 chr12 122888200 122888297 -21394192 + (TA)n Simple_repeat Simple_repeat 1 97 0 265 153 0 0 chr12 122888297 122888343 -21394146 - Alu SINE Alu -18 284 244 304 222 67 44 chr12 122888398 122888488 -21394001 - L1MC4 LINE L1 -1339 6703 6612 377 276 23 0 chr12 122888706 122888793 -21393696 + L1MC4 LINE L1 6615 6703 -1339 354 311 0 11 chr12 122888756 122888846 -21393643 - L1MC4 LINE L1 -1340 6702 6614 * 246 156 0 0 chr12 122891190 122891235 -21391254 + T-rich Low_complexity Low_complexity 2 46 0 186 80 60 40 chr12 122893052 122893102 -21389387 + CT-rich Low_complexity Low_complexity 3 53 0 335 173 12 0 chr12 122893519 122893600 -21388889 + CT-rich Low_complexity Low_complexity 2 83 0 217 280 0 0 chr12 122893935 122893985 -21388504 + GA-rich Low_complexity Low_complexity 5 54 0 213 175 0 0 chr12 122898647 122898687 -21383802 + (TG)n Simple_repeat Simple_repeat 1 40 0 333 0 0 0 chr12 122899594 122899631 -21382858 + (TG)n Simple_repeat Simple_repeat 1 37 0 378 0 0 0 chr12 122901976 122902018 -21380471 + (CA)n Simple_repeat Simple_repeat 2 43 0 540 273 56 19 chr12 122902584 122902745 -21379744 - MIR SINE MIR -49 213 47 895 221 70 0 chr12 122903751 122903950 -21378539 - MIR SINE MIR -21 241 29 221 0 35 0 chr12 122904785 122904814 -21377675 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 311 245 31 101 chr12 122904982 122905141 -21377348 - MIR SINE MIR -37 225 78 189 0 0 0 chr12 122909141 122909162 -21373327 + (T)n Simple_repeat Simple_repeat 1 21 0 207 271 71 0 chr12 122909485 122909555 -21372934 + C-rich Low_complexity Low_complexity 2 76 0 511 356 36 5 chr12 122910932 122911126 -21371363 - MIR SINE MIR -35 227 28 306 0 0 0 chr12 122911237 122911271 -21371218 + (T)n Simple_repeat Simple_repeat 1 34 0 198 0 0 0 chr12 122913720 122913742 -21368747 + (T)n Simple_repeat Simple_repeat 1 22 0 222 250 15 44 chr12 122914959 122915027 -21367462 - L2 LINE L2 -67 3246 3181 435 286 36 58 chr12 122915067 122915276 -21367213 + MIR SINE MIR 9 212 -45 1962 152 0 34 chr12 122915352 122915675 -21366814 - AluJb SINE Alu 0 312 1 252 0 0 0 chr12 122915775 122915803 -21366686 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2033 132 11 4 chr12 122915805 122916086 -21366403 - AluSx SINE Alu -29 283 1 2098 129 3 19 chr12 122916472 122916643 -21365846 - AluSx SINE Alu -8 304 139 2173 128 7 0 chr12 122916643 122916941 -21365548 - AluSg SINE Alu -10 300 1 2098 129 3 19 chr12 122916941 122917078 -21365411 - AluSx SINE Alu -173 139 1 2063 136 0 3 chr12 122917080 122917374 -21365115 - AluSx SINE Alu -19 293 1 228 295 42 63 chr12 122917392 122917458 -21365031 + L2 LINE L2 2892 2958 -314 1166 189 4 44 chr12 122917458 122917686 -21364803 - MER20 DNA MER1_type 0 219 1 228 295 42 63 chr12 122917686 122917712 -21364777 + L2 LINE L2 2958 2983 -289 2097 142 0 7 chr12 122917712 122918014 -21364475 - AluJb SINE Alu -2 310 11 228 295 42 63 chr12 122918014 122918110 -21364379 + L2 LINE L2 2983 3077 -195 282 274 36 0 chr12 122918450 122918534 -21363955 + MER58 DNA MER1_type 7 93 -2327 768 161 0 0 chr12 122918565 122918683 -21363806 - FLAM_C SINE Alu -15 118 1 630 191 57 2 chr12 122918684 122918896 -21363593 + MER58 DNA MER1_type 83 2420 0 757 115 0 9 chr12 122919592 122919705 -21362784 + HY1 scRNA scRNA 1 112 0 23 0 0 0 chr12 122919706 122919729 -21362760 + AT_rich Low_complexity Low_complexity 1 23 0 1803 171 7 0 chr12 122919737 122920035 -21362454 + AluJo SINE Alu 5 304 -8 237 191 0 0 chr12 122920056 122920103 -21362386 - MIR SINE MIR -128 134 88 404 272 30 71 chr12 122920798 122920967 -21361522 + MIR SINE MIR 20 181 -81 384 312 67 41 chr12 122921632 122921754 -21360735 + MER5B DNA MER1_type 1 139 -50 1913 151 0 45 chr12 122921754 122922134 -21360355 - AluJb SINE Alu 0 381 16 228 159 0 23 chr12 122922142 122922186 -21360303 + MER5B DNA MER1_type 120 162 -16 1831 149 42 0 chr12 122922315 122922584 -21359905 + AluSx SINE Alu 1 284 -28 543 16 0 0 chr12 122922584 122922648 -21359841 + (CA)n Simple_repeat Simple_repeat 1 64 0 1831 149 42 0 chr12 122922648 122922666 -21359823 + AluSx SINE Alu 284 300 -12 301 247 186 0 chr12 122922821 122922918 -21359571 - L2 LINE L2 -4 3309 3195 681 185 7 0 chr12 122922989 122923124 -21359365 - Charlie4 DNA MER1_type -15 1946 1811 1379 148 10 0 chr12 122923200 122923409 -21359080 - AluJb SINE Alu -16 296 86 2012 140 7 0 chr12 122923835 122924128 -21358361 + AluSc SINE Alu 1 295 -14 1514 126 38 15 chr12 122924137 122924398 -21358091 + L1PA13 LINE L1 5888 6154 -9 1907 176 48 46 chr12 122924467 122925025 -21357464 - MLT2A2 LTR ERVL 0 554 1 851 206 259 53 chr12 122925415 122925770 -21356719 - MLT1G LTR MaLR -20 570 143 430 273 124 31 chr12 122926170 122926364 -21356125 - MIR SINE MIR -14 248 37 316 224 26 78 chr12 122926822 122926938 -21355551 + MIR SINE MIR 84 193 -69 458 226 32 16 chr12 122928551 122928675 -21353814 - MER91C DNA MER1_type -9 131 6 1158 250 80 54 chr12 122928915 122929303 -21353186 - LTR16C LTR ERVL -23 468 71 281 189 2 112 chr12 122929543 122929666 -21352823 + MIR SINE MIR 45 135 -73 301 236 63 47 chr12 122929893 122929990 -21352499 + MLT2C1 LTR ERVL 183 281 -116 552 201 14 58 chr12 122929990 122930129 -21352360 + MLT1A2 LTR MaLR 2 134 -240 278 26 26 0 chr12 122930156 122930195 -21352294 + (TC)n Simple_repeat Simple_repeat 1 40 0 2290 142 63 135 chr12 122930249 122930863 -21351626 + L1MD2 LINE L1 5780 6349 -10 2018 117 53 13 chr12 122930867 122931167 -21351322 + AluSx SINE Alu 1 312 0 580 292 188 12 chr12 122931236 122931572 -21350917 - LTR16C LTR ERVL 0 491 97 765 140 0 0 chr12 122931881 122931995 -21350494 + FLAM_C SINE Alu 28 141 -2 282 115 0 0 chr12 122931995 122932047 -21350442 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 271 346 77 6 chr12 122932195 122932377 -21350112 - MIR SINE MIR -35 227 33 1414 206 27 30 chr12 122932868 122933169 -21349320 + AluJo SINE Alu 1 300 -12 1872 153 3 32 chr12 122933300 122933613 -21348876 - AluJo SINE Alu -8 304 1 210 233 0 0 chr12 122933683 122933743 -21348746 + (ATGGTG)n Simple_repeat Simple_repeat 4 63 0 2240 113 3 0 chr12 122933866 122934166 -21348323 + AluSp SINE Alu 1 301 -12 608 258 9 63 chr12 122934193 122934228 -21348261 - MIR SINE MIR -6 256 221 2778 73 20 3 chr12 122934228 122934586 -21347903 + THE1B LTR MaLR 1 364 0 608 258 9 63 chr12 122934586 122934771 -21347718 - MIR SINE MIR -41 221 48 288 50 0 0 chr12 122934893 122934933 -21347556 + L1PA3 LINE L1 6113 6152 -3 1750 125 114 7 chr12 122935458 122935730 -21346759 - AluSg1 SINE Alu -8 301 1 819 289 63 23 chr12 122935733 122936082 -21346407 - L1ME4a LINE L1 -294 5827 5465 2452 72 3 0 chr12 122936137 122936427 -21346062 + AluSp SINE Alu 1 291 -22 247 260 20 113 chr12 122936454 122936567 -21345922 - MIR SINE MIR -10 252 155 739 150 55 8 chr12 122936567 122936694 -21345795 - FLAM_C SINE Alu 0 133 1 247 260 20 113 chr12 122936694 122936730 -21345759 - MIR SINE MIR -107 155 117 182 232 18 36 chr12 122936756 122936812 -21345677 + MIR SINE MIR 64 118 -144 492 317 38 64 chr12 122937142 122937486 -21345003 + L2 LINE L2 2919 3253 -19 22 35 0 0 chr12 122939879 122939908 -21342581 + AT_rich Low_complexity Low_complexity 1 29 0 272 91 23 0 chr12 122940245 122940289 -21342200 + (TC)n Simple_repeat Simple_repeat 2 46 0 421 282 68 25 chr12 122941066 122941229 -21341260 + MIR SINE MIR 80 249 -13 765 186 0 0 chr12 122941238 122941367 -21341122 + FLAM_A SINE Alu 2 130 -3 256 264 11 46 chr12 122941376 122941463 -21341026 + L2 LINE L2 3176 3259 -54 880 255 30 8 chr12 122941503 122941738 -21340751 - MIR SINE MIR -6 256 17 480 72 0 0 chr12 122941779 122941848 -21340641 + (TGGA)n Simple_repeat Simple_repeat 3 71 0 233 270 126 38 chr12 122942210 122942369 -21340120 + MIR SINE MIR 35 207 -55 350 301 75 0 chr12 122942760 122942906 -21339583 - MIR SINE MIR -58 204 48 354 235 0 0 chr12 122942972 122943057 -21339432 - L2 LINE L2 0 3272 3188 291 28 0 0 chr12 122943562 122943598 -21338891 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 192 351 53 9 chr12 122944924 122945038 -21337451 - MIR SINE MIR -72 136 18 828 200 5 0 chr12 122945139 122945577 -21336912 + (TGGA)n Simple_repeat Simple_repeat 1 440 0 234 62 0 0 chr12 122945582 122945614 -21336875 + (TTG)n Simple_repeat Simple_repeat 2 33 0 420 291 24 18 chr12 122945715 122945880 -21336609 + L2 LINE L2 3130 3295 -18 201 263 0 18 chr12 122946760 122946817 -21335672 + MIR SINE MIR 46 101 -161 2008 146 7 3 chr12 122947438 122947747 -21334742 - AluJo SINE Alu -2 310 1 715 244 11 0 chr12 122947845 122948021 -21334468 - MIR SINE MIR -14 248 71 366 205 179 45 chr12 122948424 122948580 -21333909 + MIR SINE MIR 1 177 -85 228 294 11 22 chr12 122949193 122949285 -21333204 - MIR SINE MIR -78 184 94 284 291 30 30 chr12 122949574 122949708 -21332781 - MIR SINE MIR -123 139 6 233 37 0 0 chr12 122949952 122949979 -21332510 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr12 122950306 122950334 -21332155 + AT_rich Low_complexity Low_complexity 1 28 0 1860 173 0 3 chr12 122950334 122950640 -21331849 + AluJb SINE Alu 5 309 -3 560 200 19 52 chr12 122951741 122951896 -21330593 + MIR SINE MIR 101 250 -12 206 241 19 19 chr12 122951929 122951983 -21330506 + GA-rich Low_complexity Low_complexity 2 55 0 271 111 19 19 chr12 122952005 122952059 -21330430 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 875 157 7 7 chr12 122952622 122952775 -21329714 + Charlie4 DNA MER1_type 1808 1960 -1 939 134 0 0 chr12 122952989 122953116 -21329373 + FRAM SINE Alu 18 144 -32 297 0 0 0 chr12 122953116 122953149 -21329340 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 623 267 0 0 chr12 122953239 122953385 -21329104 - MIR SINE MIR -72 190 45 213 121 0 0 chr12 122953786 122953819 -21328670 + (A)n Simple_repeat Simple_repeat 1 33 0 452 281 44 61 chr12 122954626 122954756 -21327733 - MIR SINE MIR -15 247 120 1825 131 93 0 chr12 122954756 122955148 -21327341 + AluSq SINE Alu 1 416 0 452 281 44 61 chr12 122955148 122955244 -21327245 - MIR SINE MIR -142 120 24 370 176 63 176 chr12 122955272 122955527 -21326962 - MLT1B LTR MaLR -57 333 108 1056 141 0 0 chr12 122955586 122955742 -21326747 - L1PB1 LINE L1 -17 6134 5979 1323 135 41 41 chr12 122956795 122957040 -21325449 + L1PB4 LINE L1 5911 6155 -1 1559 190 17 21 chr12 122957088 122957378 -21325111 - AluJo SINE Alu -13 299 11 320 200 118 18 chr12 122957639 122957749 -21324740 + MIR SINE MIR 94 214 -48 393 22 0 0 chr12 122957760 122957806 -21324683 + (CA)n Simple_repeat Simple_repeat 2 47 0 223 274 60 43 chr12 122958049 122958166 -21324323 + MIR SINE MIR 90 208 -54 2288 106 7 0 chr12 122958238 122958539 -21323950 - AluSg SINE Alu -7 303 1 334 233 39 48 chr12 122959117 122959220 -21323269 - MER5B DNA MER1_type -3 175 74 1150 192 32 62 chr12 122959220 122959546 -21322943 + L1ME2 LINE L1 5838 6157 -9 253 250 14 0 chr12 122959587 122959659 -21322830 + L1MC4 LINE L1 7830 7902 -140 222 192 0 0 chr12 122959675 122959727 -21322762 + (TGGA)n Simple_repeat Simple_repeat 2 53 0 235 319 35 17 chr12 122959730 122959846 -21322643 + L1MC4 LINE L1 7924 8041 -1 479 279 38 11 chr12 122960013 122960196 -21322293 + MER5A DNA MER1_type 2 189 0 5082 139 20 90 chr12 122960209 122960543 -21321946 + L1MA9 LINE L1 5275 5631 -681 1770 181 0 7 chr12 122960543 122960836 -21321653 + AluJo SINE Alu 1 291 -21 5082 139 20 90 chr12 122960836 122961618 -21320871 + L1MA9 LINE L1 5631 6312 0 1448 178 0 94 chr12 122962180 122962500 -21319989 - AluJo SINE Alu -21 291 2 181 0 0 0 chr12 122963188 122963210 -21319279 + MIR SINE MIR 82 103 -105 368 269 172 41 chr12 122963313 122963399 -21319090 + MLT1G3 LTR MaLR 1 74 -481 1629 102 0 5 chr12 122963399 122963647 -21318842 - AluSq SINE Alu 0 320 74 368 269 172 41 chr12 122963647 122964005 -21318484 + MLT1G3 LTR MaLR 74 490 -65 230 182 23 0 chr12 122964317 122964361 -21318128 + MLT1G3 LTR MaLR 523 567 0 320 215 38 0 chr12 122964367 122964446 -21318043 - MIR SINE MIR -66 196 115 235 218 154 39 chr12 122964541 122964619 -21317870 + L2 LINE L2 3186 3272 0 301 245 10 41 chr12 122964650 122964748 -21317741 + MIR3 SINE MIR 111 205 -3 305 265 0 10 chr12 122965131 122965229 -21317260 + MER113 DNA MER1_type? 3 99 -422 207 139 0 0 chr12 122965243 122965279 -21317210 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 1484 194 34 0 chr12 122965359 122965622 -21316867 + AluJo SINE Alu 22 293 -19 541 280 16 27 chr12 122966341 122966527 -21315962 - MIR SINE MIR -50 212 29 1172 178 5 0 chr12 122966897 122967094 -21315395 + AluJb SINE Alu 83 280 -32 189 0 0 0 chr12 122967094 122967115 -21315374 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1702 149 19 42 chr12 122967164 122967299 -21315190 + AluJb SINE Alu 1 138 -174 2208 111 7 0 chr12 122967299 122967606 -21314883 + AluSx SINE Alu 1 309 -3 1702 149 19 42 chr12 122967606 122967778 -21314711 + AluJb SINE Alu 138 301 -11 203 340 46 41 chr12 122967968 122968162 -21314327 - L2 LINE L2 -179 3093 2899 199 289 21 52 chr12 122968333 122968430 -21314059 - L2 LINE L2 -599 2715 2622 938 176 0 24 chr12 122969048 122969213 -21313276 - FRAM SINE Alu -6 170 10 356 0 23 0 chr12 122969497 122969541 -21312948 + (CA)n Simple_repeat Simple_repeat 2 46 0 716 261 189 14 chr12 122971248 122971594 -21310895 + MER113 DNA MER1_type? 9 448 -73 1905 135 3 40 chr12 122971594 122971930 -21310559 + AluSq SINE Alu 1 325 0 716 261 189 14 chr12 122971930 122972015 -21310474 + MER113 DNA MER1_type? 448 517 -4 21 36 0 0 chr12 122972122 122972150 -21310339 + AT_rich Low_complexity Low_complexity 1 28 0 2440 167 7 2 chr12 122972208 122972622 -21309867 + L1MC1 LINE L1 5908 6323 -10 1801 149 3 39 chr12 122972622 122972930 -21309559 - AluJo SINE Alu -15 297 1 2156 128 3 0 chr12 122972933 122973239 -21309250 - AluSx SINE Alu -5 307 1 763 253 0 0 chr12 122973262 122973416 -21309073 - AluJb SINE Alu -14 298 145 22 0 0 0 chr12 122973430 122973452 -21309037 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr12 122973458 122973500 -21308989 + (TG)n Simple_repeat Simple_repeat 2 43 0 847 105 7 77 chr12 122973523 122973666 -21308823 - FLAM_C SINE Alu 0 133 1 2252 121 3 0 chr12 122973705 122974010 -21308479 - AluSx SINE Alu -6 306 1 2889 13 0 0 chr12 122974256 122974566 -21307923 + AluYa5 SINE Alu 2 311 0 696 253 163 0 chr12 122976260 122976462 -21306027 - MIR SINE MIR -22 240 6 198 0 0 0 chr12 122976960 122976982 -21305507 + (A)n Simple_repeat Simple_repeat 1 22 0 370 271 8 41 chr12 122977100 122977222 -21305267 + L1MA10 LINE L1 6217 6334 0 1789 168 0 39 chr12 122978810 122979120 -21303369 + AluJb SINE Alu 5 302 -10 22 56 0 0 chr12 122980958 122980994 -21301495 + GC_rich Low_complexity Low_complexity 1 36 0 303 351 6 34 chr12 122983087 122983323 -21299166 + GA-rich Low_complexity Low_complexity 1 229 0 228 272 61 48 chr12 122984052 122984203 -21298286 + MIR SINE MIR 92 248 -14 23 0 0 0 chr12 122985610 122985633 -21296856 + AT_rich Low_complexity Low_complexity 1 23 0 320 290 28 28 chr12 122986443 122986588 -21295901 + CT-rich Low_complexity Low_complexity 6 150 0 201 229 0 0 chr12 122987485 122987533 -21294956 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 209 68 0 68 chr12 122988047 122988091 -21294398 + (GGA)n Simple_repeat Simple_repeat 1 41 0 261 57 0 0 chr12 122990828 122990863 -21291626 + (TC)n Simple_repeat Simple_repeat 2 36 0 194 173 0 19 chr12 122990965 122991017 -21291472 + CT-rich Low_complexity Low_complexity 1 51 0 183 42 0 0 chr12 122993230 122993254 -21289235 + (TTA)n Simple_repeat Simple_repeat 1 24 0 243 244 12 0 chr12 123000110 123000192 -21282297 + (TG)n Simple_repeat Simple_repeat 2 84 0 306 228 30 59 chr12 123001378 123001479 -21281010 - L1MCa LINE L1 -4334 2092 1995 232 350 7 0 chr12 123001631 123001771 -21280718 + (CA)n Simple_repeat Simple_repeat 2 142 0 384 217 0 12 chr12 123002023 123002106 -21280383 + Tigger5 DNA MER2_type 2237 2318 -5 433 253 43 43 chr12 123002646 123002808 -21279681 - MIR3 SINE MIR -15 193 32 418 279 111 13 chr12 123002963 123003001 -21279488 + L2 LINE L2 2712 2745 -569 831 226 6 6 chr12 123003001 123003165 -21279324 + FRAM SINE Alu 1 164 -2 418 279 111 13 chr12 123003165 123003352 -21279137 + L2 LINE L2 2745 2959 -355 2238 70 10 10 chr12 123003498 123003797 -21278692 + L1PA10 LINE L1 5864 6162 -6 445 279 43 14 chr12 123003805 123003945 -21278544 + MIR SINE MIR 97 240 -22 248 349 53 33 chr12 123003955 123004107 -21278382 + L2 LINE L2 3154 3308 -5 540 136 0 11 chr12 123004167 123004255 -21278234 - Tigger5 DNA MER2_type 0 2323 2237 309 208 0 0 chr12 123004265 123004318 -21278171 - Tigger5 DNA MER2_type -2268 55 3 26 0 0 0 chr12 123004999 123005025 -21277464 + AT_rich Low_complexity Low_complexity 1 26 0 356 310 51 5 chr12 123005424 123005612 -21276877 + MIR SINE MIR 43 210 -52 1693 167 115 0 chr12 123005612 123005924 -21276565 + MER7A DNA MER2_type 1 346 0 356 310 51 5 chr12 123005924 123005946 -21276543 + MIR SINE MIR 210 230 -32 4283 94 7 41 chr12 123006652 123007330 -21275159 + L1MA3 LINE L1 5651 6305 0 469 279 121 68 chr12 123007518 123007841 -21274648 + MLT1H LTR MaLR 208 547 -2 2531 74 0 3 chr12 123007908 123008218 -21274271 + AluY SINE Alu 1 309 -2 478 325 39 15 chr12 123008552 123008758 -21273731 + MLT1K LTR MaLR 166 376 -212 384 264 153 7 chr12 123008765 123008909 -21273580 + MIR SINE MIR 95 259 -3 514 311 56 10 chr12 123009048 123009244 -21273245 + MIR SINE MIR 48 252 -10 430 257 20 61 chr12 123010508 123010656 -21271833 + MIR SINE MIR 78 219 -43 426 268 0 18 chr12 123011211 123011323 -21271166 - L2 LINE L2 -15 3298 3189 482 275 20 27 chr12 123011521 123011670 -21270819 - MIR SINE MIR -19 243 96 1276 226 105 6 chr12 123012195 123012558 -21269931 + L1MC4 LINE L1 7494 7892 -150 239 266 0 108 chr12 123012665 123012804 -21269685 + MLT1K LTR MaLR 439 562 -26 218 358 83 28 chr12 123012871 123012980 -21269509 - L2 LINE L2 -43 3229 3115 2314 122 17 3 chr12 123012981 123013335 -21269154 + MER46B DNA MER2_type 1 234 -2 2209 151 0 0 chr12 123013397 123013709 -21268780 - AluSx SINE Alu 0 312 1 717 153 0 0 chr12 123014163 123014274 -21268215 + L1PA16 LINE L1 6046 6156 -10 1298 179 9 5 chr12 123014274 123014484 -21268005 + L1PA15 LINE L1 5925 6149 -16 28 29 0 0 chr12 123014496 123014531 -21267958 + AT_rich Low_complexity Low_complexity 1 35 0 2160 136 0 3 chr12 123014531 123014877 -21267612 + AluSx SINE Alu 1 345 0 2143 180 8 8 chr12 123015418 123015807 -21266682 - MLT1B LTR MaLR -1 389 1 800 294 64 0 chr12 123015807 123016025 -21266464 - MIR SINE MIR -30 232 1 794 254 0 40 chr12 123016315 123016516 -21265973 - ERVL LTR ERVL -2 5762 5570 805 112 0 14 chr12 123016569 123016712 -21265777 + (TG)n Simple_repeat Simple_repeat 2 142 0 186 288 48 104 chr12 123017624 123017749 -21264740 - MIR SINE MIR -79 183 66 248 281 47 0 chr12 123018078 123018142 -21264347 - MIR SINE MIR -114 148 82 180 0 0 0 chr12 123018302 123018322 -21264167 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 2349 81 0 10 chr12 123018322 123018612 -21263877 - AluY SINE Alu -22 289 1 625 224 97 18 chr12 123018659 123018824 -21263665 + MIR SINE MIR 85 262 0 368 265 82 127 chr12 123018825 123019116 -21263373 + L1ME4a LINE L1 5748 6025 -96 522 324 22 6 chr12 123020302 123020484 -21262005 - MIR SINE MIR -32 230 46 22 35 0 0 chr12 123020776 123020805 -21261684 + AT_rich Low_complexity Low_complexity 1 29 0 461 350 79 0 chr12 123021539 123021753 -21260736 + MIR SINE MIR 32 262 0 468 0 0 0 chr12 123022035 123022087 -21260402 + (CA)n Simple_repeat Simple_repeat 2 53 0 671 297 88 29 chr12 123022087 123022495 -21259994 - L1MC4a LINE L1 -1892 5916 5485 201 147 0 0 chr12 123023677 123023711 -21258778 + (A)n Simple_repeat Simple_repeat 1 34 0 209 125 0 42 chr12 123023905 123023953 -21258536 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 201 80 40 20 chr12 123024590 123024640 -21257849 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 287 319 111 7 chr12 123026327 123026471 -21256018 - MIR SINE MIR -64 198 40 518 255 87 6 chr12 123026722 123026883 -21255606 - MIR SINE MIR -71 191 18 183 114 0 0 chr12 123027777 123027812 -21254677 + (CA)n Simple_repeat Simple_repeat 2 36 0 233 0 62 0 chr12 123027868 123027900 -21254589 + (TTTC)n Simple_repeat Simple_repeat 4 37 0 254 277 160 17 chr12 123029178 123029297 -21253192 + L2 LINE L2 3137 3272 0 358 252 163 0 chr12 123029482 123029605 -21252884 - MIR SINE MIR -41 221 79 303 93 0 0 chr12 123030593 123030636 -21251853 + (T)n Simple_repeat Simple_repeat 1 43 0 264 203 0 0 chr12 123031462 123031521 -21250968 + MIR SINE MIR 71 129 -79 1665 161 10 35 chr12 123031616 123031927 -21250562 - AluJb SINE Alu -1 311 9 276 275 77 0 chr12 123032863 123032954 -21249535 - MIR SINE MIR -73 135 38 305 321 27 0 chr12 123034113 123034225 -21248264 - MIR SINE MIR -75 187 73 312 27 0 0 chr12 123035042 123035079 -21247410 + (ATG)n Simple_repeat Simple_repeat 3 39 0 653 300 67 5 chr12 123035081 123035291 -21247198 - MIR SINE MIR -8 254 32 429 95 0 0 chr12 123035761 123035824 -21246665 + (GA)n Simple_repeat Simple_repeat 1 63 0 795 206 0 0 chr12 123036674 123036849 -21245640 + CT-rich Low_complexity Low_complexity 4 178 0 261 221 0 0 chr12 123036863 123036931 -21245558 + CT-rich Low_complexity Low_complexity 2 69 0 693 241 92 27 chr12 123037101 123037395 -21245094 + L1ME LINE L1 5508 5820 -301 1734 148 13 33 chr12 123037396 123037699 -21244790 - AluSx SINE Alu -15 297 1 296 77 19 0 chr12 123037754 123037806 -21244683 + (TTG)n Simple_repeat Simple_repeat 2 54 0 1868 120 15 0 chr12 123037815 123038081 -21244408 - AluSq SINE Alu -43 270 1 344 176 4 8 chr12 123038183 123038256 -21244233 - AluJo SINE Alu -147 155 105 241 316 7 105 chr12 123038559 123038711 -21243778 - L3 LINE CR1 -1 1576 1440 718 161 0 0 chr12 123038979 123039091 -21243398 - AluJo SINE Alu -194 118 7 325 179 0 51 chr12 123039120 123039198 -21243291 + L1MC5 LINE L1 7842 7915 -46 309 325 50 12 chr12 123040162 123040322 -21242167 + MER5A DNA MER1_type 1 166 -23 22 0 0 0 chr12 123040369 123040391 -21242098 + AT_rich Low_complexity Low_complexity 1 22 0 1920 141 3 0 chr12 123040391 123040682 -21241807 - AluJb SINE Alu -20 292 1 469 330 45 6 chr12 123040791 123040967 -21241522 - MIR SINE MIR -1 261 79 208 256 0 0 chr12 123040969 123041012 -21241477 + (CAA)n Simple_repeat Simple_repeat 1 43 0 202 229 84 96 chr12 123041012 123041095 -21241394 - MIR SINE MIR 0 262 181 1748 159 48 7 chr12 123041117 123041406 -21241083 - AluSx SINE Alu -11 301 1 343 137 0 0 chr12 123041499 123041550 -21240939 + AluJb SINE Alu 72 122 -180 428 289 74 0 chr12 123041600 123041735 -21240754 - MIR SINE MIR -78 184 40 1062 133 12 0 chr12 123041814 123041979 -21240510 - AluY SINE Alu -7 304 138 416 293 16 8 chr12 123042221 123042344 -21240145 + MIR SINE MIR 21 144 -64 21 0 0 0 chr12 123042969 123042990 -21239499 + AT_rich Low_complexity Low_complexity 1 21 0 505 226 113 100 chr12 123043425 123043603 -21238886 + L1MC4a LINE L1 5586 5769 -2039 1457 167 3 70 chr12 123043603 123043915 -21238574 + AluJb SINE Alu 9 299 -13 505 226 113 100 chr12 123043915 123043975 -21238514 + L1MC4a LINE L1 5769 5827 -1981 2022 110 0 58 chr12 123044209 123044344 -21238145 + AluSx SINE Alu 3 144 -168 2027 123 0 3 chr12 123044344 123044646 -21237843 + AluSg SINE Alu 1 301 -9 2022 110 0 58 chr12 123044646 123044837 -21237652 + AluSx SINE Alu 144 310 -2 732 188 0 15 chr12 123044840 123044973 -21237516 + FLAM_A SINE Alu 1 131 -2 355 238 101 79 chr12 123044974 123045163 -21237326 + L1ME4a LINE L1 5929 6121 0 231 242 11 95 chr12 123045632 123045727 -21236762 - MIR SINE MIR 0 262 176 1319 265 64 24 chr12 123045900 123046281 -21236208 + LTR16C LTR ERVL 52 453 -38 1591 162 0 65 chr12 123046281 123046602 -21235887 + AluJb SINE Alu 1 300 -12 1319 265 64 24 chr12 123046602 123046643 -21235846 + LTR16C LTR ERVL 453 491 0 2085 118 0 3 chr12 123046688 123047036 -21235453 + AluSx SINE Alu 1 347 0 409 295 80 48 chr12 123047067 123047318 -21235171 - MIR SINE MIR -2 260 2 269 370 49 12 chr12 123047346 123047508 -21234981 - MIR SINE MIR -26 236 69 489 211 42 0 chr12 123048005 123048100 -21234389 + MLT1L LTR MaLR 157 255 -360 853 233 39 131 chr12 123048108 123048598 -21233891 + MLT1H1 LTR MaLR 1 445 -97 328 238 94 116 chr12 123048754 123048935 -21233554 + MLT1J LTR MaLR 316 492 -19 5454 130 61 7 chr12 123048948 123049299 -21233190 - Tigger1 DNA MER2_type 0 2418 2087 2150 52 52 45 chr12 123049299 123049607 -21232882 - AluY SINE Alu -1 310 1 5454 130 61 7 chr12 123049607 123050141 -21232348 - Tigger1 DNA MER2_type -331 2087 1485 4081 117 10 0 chr12 123050147 123050745 -21231744 + Tigger1 DNA MER2_type 380 983 -1435 1968 97 0 0 chr12 123051470 123051729 -21230760 + AluSx SINE Alu 11 269 -43 29 60 0 0 chr12 123051946 123051996 -21230493 + AT_rich Low_complexity Low_complexity 1 50 0 1325 149 9 0 chr12 123052091 123052312 -21230177 + L1MA8 LINE L1 6005 6227 -64 818 171 0 7 chr12 123052312 123052458 -21230031 - AluJb SINE Alu -9 303 159 405 0 0 0 chr12 123052612 123052657 -21229832 + (TA)n Simple_repeat Simple_repeat 1 45 0 2080 234 21 7 chr12 123052663 123053235 -21229254 + L1M4 LINE L1 2557 3136 -3010 722 167 0 0 chr12 123053257 123053365 -21229124 + AluJo SINE Alu 11 118 -194 321 206 0 0 chr12 123053370 123053433 -21229056 + L1M4 LINE L1 3132 3194 -2952 435 335 72 28 chr12 123053513 123053803 -21228686 + L1MC5 LINE L1 7481 7783 -178 657 166 11 112 chr12 123053894 123053974 -21228515 + MER96B DNA MER1_type? 250 302 -115 1551 173 38 3 chr12 123053974 123054263 -21228226 + AluJb SINE Alu 13 311 -1 657 166 11 112 chr12 123054263 123054369 -21228120 + MER96B DNA MER1_type? 302 417 0 676 242 99 28 chr12 123055065 123055276 -21227213 + MIR SINE MIR 37 262 0 842 196 6 6 chr12 123055375 123055554 -21226935 + AluJo SINE Alu 120 298 -14 1994 135 3 0 chr12 123055582 123055885 -21226604 + AluSx SINE Alu 1 304 -8 21 82 0 0 chr12 123055904 123055953 -21226536 + AT_rich Low_complexity Low_complexity 1 49 0 603 277 26 32 chr12 123056514 123056692 -21225797 + MIR SINE MIR 37 213 -49 900 188 31 62 chr12 123056692 123056916 -21225573 - MER20 DNA MER1_type -2 217 1 603 277 26 32 chr12 123056916 123056966 -21225523 + MIR SINE MIR 213 262 0 245 254 0 0 chr12 123057973 123058028 -21224461 + CT-rich Low_complexity Low_complexity 1 55 0 4914 142 12 64 chr12 123058404 123059142 -21223347 - L1MA4 LINE L1 -11 6289 5514 242 0 61 0 chr12 123059142 123059175 -21223314 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1958 114 0 47 chr12 123059175 123059325 -21223164 - AluSx SINE Alu -29 283 152 2451 66 0 0 chr12 123059325 123059629 -21222860 - AluY SINE Alu -7 304 1 1958 114 0 47 chr12 123059629 123059775 -21222714 - AluSx SINE Alu -160 152 1 4914 142 12 64 chr12 123059775 123060001 -21222488 - L1MA4 LINE L1 -784 5516 5374 477 110 0 0 chr12 123060010 123060083 -21222406 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 3427 188 6 6 chr12 123060083 123060789 -21221700 - L1 LINE L1 -813 5333 4641 305 317 78 14 chr12 123060791 123060933 -21221556 - MIR SINE MIR -96 166 16 201 346 146 8 chr12 123060946 123061076 -21221413 + MIR SINE MIR 8 155 -107 408 213 75 0 chr12 123061077 123061171 -21221318 - MER91B DNA MER1_type 0 190 90 547 181 29 101 chr12 123061185 123061230 -21221259 - MER91B DNA MER1_type -60 130 83 1705 192 33 6 chr12 123061230 123061564 -21220925 - MER2 DNA MER2_type 0 344 2 547 181 29 101 chr12 123061564 123061656 -21220833 - MER91B DNA MER1_type -107 83 3 463 301 30 45 chr12 123062128 123062327 -21220162 + MIR SINE MIR 16 211 -51 2014 136 0 3 chr12 123062486 123062817 -21219672 + AluSx SINE Alu 4 333 0 678 300 64 9 chr12 123063498 123063718 -21218771 + MIR SINE MIR 31 262 0 508 181 105 41 chr12 123064224 123064395 -21218094 + MER96B DNA MER1_type? 2 183 -234 189 0 0 0 chr12 123065093 123065114 -21217375 + (T)n Simple_repeat Simple_repeat 1 21 0 183 80 0 0 chr12 123065210 123065235 -21217254 + (GGA)n Simple_repeat Simple_repeat 2 26 0 224 331 6 12 chr12 123066330 123066502 -21215987 + GA-rich Low_complexity Low_complexity 2 172 0 202 24 0 98 chr12 123067352 123067393 -21215096 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 772 241 16 40 chr12 123067522 123067775 -21214714 + L1ME3A LINE L1 5663 5909 -261 385 292 22 56 chr12 123068826 123069004 -21213485 - L2 LINE L2 -1 3312 3141 230 170 70 0 chr12 123069010 123069110 -21213379 + (TA)n Simple_repeat Simple_repeat 2 108 0 9310 70 22 35 chr12 123069114 123070490 -21211999 - SVA Other Other 0 1386 29 216 0 0 0 chr12 123070528 123070552 -21211937 + (GGGAGA)n Simple_repeat Simple_repeat 3 26 0 48 67 0 0 chr12 123070556 123070646 -21211843 + AT_rich Low_complexity Low_complexity 1 90 0 188 135 54 0 chr12 123070652 123070726 -21211763 + (TA)n Simple_repeat Simple_repeat 1 78 0 236 250 73 73 chr12 123070749 123070885 -21211604 - L2 LINE L2 -155 3158 3023 2811 228 71 29 chr12 123070896 123071668 -21210821 - L1ME1 LINE L1 -5 6161 5363 262 273 42 14 chr12 123071825 123071968 -21210521 - L2 LINE L2 -337 2976 2830 2013 266 79 99 chr12 123072019 123072614 -21209875 - MLT1G LTR MaLR -12 578 1 219 284 62 25 chr12 123072683 123072764 -21209725 - L2 LINE L2 -72 3200 3117 541 264 126 19 chr12 123073337 123073496 -21208993 + MER5B DNA MER1_type 3 178 0 714 239 75 38 chr12 123073738 123073951 -21208538 - MIR SINE MIR -10 252 32 1685 156 7 3 chr12 123074781 123075070 -21207419 + AluJo SINE Alu 1 290 -22 1855 122 21 7 chr12 123075070 123075387 -21207102 - AluSg SINE Alu 0 321 1 346 300 63 49 chr12 123076294 123076517 -21205972 + L2 LINE L2 2263 2488 -826 409 296 82 46 chr12 123076537 123076779 -21205710 - MIR SINE MIR -6 256 10 852 214 91 29 chr12 123077250 123077493 -21204996 - MIR SINE MIR 0 262 5 403 271 57 33 chr12 123077499 123077658 -21204831 + MIR SINE MIR 13 185 -62 560 335 33 47 chr12 123078099 123078535 -21203954 - L1ME3A LINE L1 -289 5881 5448 360 239 130 11 chr12 123080190 123080282 -21202207 + L2 LINE L2 3210 3312 -1 913 273 191 10 chr12 123080383 123080870 -21201619 + L1ME4a LINE L1 5520 6094 -27 286 202 0 125 chr12 123081249 123081353 -21201136 - MLT1H LTR MaLR -31 518 428 293 273 66 33 chr12 123081490 123081611 -21200878 - MLT1H LTR MaLR -375 174 50 1886 165 3 7 chr12 123081885 123082182 -21200307 - AluJo SINE Alu -16 296 1 1146 271 68 48 chr12 123082276 123082690 -21199799 + MLT2E LTR ERVL 1 422 -206 281 177 32 0 chr12 123082698 123082760 -21199729 - MIR SINE MIR -113 149 86 367 291 67 45 chr12 123083020 123083250 -21199239 + MLT1I LTR MaLR 98 310 -99 365 182 20 24 chr12 123083301 123083398 -21199091 + MLT1F LTR MaLR 434 526 -16 787 201 21 109 chr12 123083868 123084107 -21198382 + MER20 DNA MER1_type 1 218 -1 1219 196 3 58 chr12 123084441 123084742 -21197747 - L1MB8 LINE L1 -186 5992 5711 815 276 38 4 chr12 123084979 123085219 -21197270 - MIR SINE MIR 0 262 17 505 214 165 33 chr12 123085376 123085558 -21196931 + MIR SINE MIR 36 241 -21 217 208 200 73 chr12 123086556 123086716 -21195773 + MIR3 SINE MIR 2 190 -69 362 211 0 11 chr12 123086759 123086854 -21195635 + GA-rich Low_complexity Low_complexity 3 96 0 1847 198 48 24 chr12 123088037 123088203 -21194286 + L1MB8 LINE L1 5714 5874 -304 1853 145 54 46 chr12 123088203 123088575 -21193914 + THE1C LTR MaLR 1 375 0 1847 198 48 24 chr12 123088575 123088862 -21193627 + L1MB8 LINE L1 5874 6178 0 2252 105 0 13 chr12 123088876 123089181 -21193308 + AluSx SINE Alu 1 301 -11 388 328 129 33 chr12 123089379 123089681 -21192808 + L3 LINE CR1 1245 1575 -2 829 140 4 183 chr12 123089811 123090046 -21192443 - 7SK RNA RNA 0 193 1 372 308 91 14 chr12 123090107 123090250 -21192239 + MIR SINE MIR 1 154 -108 559 223 31 15 chr12 123090598 123090728 -21191761 - 7SK RNA RNA -40 153 22 193 269 0 28 chr12 123090818 123090959 -21191530 + (CCA)n Simple_repeat Simple_repeat 1 137 0 467 256 0 6 chr12 123090975 123091147 -21191342 + (CACCAT)n Simple_repeat Simple_repeat 6 176 0 410 258 83 28 chr12 123093983 123094200 -21188289 + L1ME LINE L1 5591 5819 -302 4217 86 11 11 chr12 123094214 123094782 -21187707 + L1PA10 LINE L1 5600 6167 -1 31 76 0 0 chr12 123094938 123095004 -21187485 + AT_rich Low_complexity Low_complexity 1 66 0 1104 40 0 0 chr12 123095137 123095262 -21187227 + L1PA7 LINE L1 6026 6150 -4 2994 154 3 8 chr12 123095920 123096428 -21186061 + L1HS LINE L1 5652 6144 -161 1203 114 30 0 chr12 123096429 123096595 -21185894 + L1PA11 LINE L1 6000 6170 -4 1214 78 6 12 chr12 123096636 123096802 -21185687 + L1MA3 LINE L1 6132 6296 -9 44 0 0 0 chr12 123096804 123096848 -21185641 + AT_rich Low_complexity Low_complexity 1 44 0 2090 114 23 19 chr12 123096868 123097176 -21185313 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr12 123097203 123097224 -21185265 + AT_rich Low_complexity Low_complexity 1 21 0 252 278 32 32 chr12 123097657 123097799 -21184690 + MIR3 SINE MIR 14 156 -106 1239 137 39 0 chr12 123097835 123098017 -21184472 + AluSx SINE Alu 1 189 -123 2185 118 3 26 chr12 123098037 123098384 -21184105 - THE1C LTR MaLR -36 339 1 514 261 118 25 chr12 123098643 123098846 -21183643 - MIR SINE MIR -26 236 15 377 284 76 76 chr12 123098856 123098974 -21183515 + L1MC5 LINE L1 5451 5568 -2240 1641 176 0 50 chr12 123098974 123099292 -21183197 + AluJb SINE Alu 1 302 -10 377 284 76 76 chr12 123099292 123099448 -21183041 + L1MC5 LINE L1 5567 5725 -2083 764 224 132 88 chr12 123099480 123099598 -21182891 + HAL1b LINE L1 602 713 -635 827 134 70 19 chr12 123099598 123099755 -21182734 + L1MA8 LINE L1 6121 6285 -6 764 224 132 88 chr12 123099755 123099936 -21182553 + HAL1b LINE L1 713 885 -463 186 43 0 0 chr12 123099936 123099959 -21182530 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1347 166 14 71 chr12 123099965 123100260 -21182229 - AluJo SINE Alu -30 282 5 764 224 132 88 chr12 123100260 123100408 -21182081 + HAL1b LINE L1 889 1077 -271 23 68 0 0 chr12 123100414 123100458 -21182031 + AT_rich Low_complexity Low_complexity 1 44 0 1329 233 47 52 chr12 123100486 123100893 -21181596 + L1MC5 LINE L1 6693 7097 -864 1321 174 0 13 chr12 123100897 123101127 -21181362 + AluJo SINE Alu 77 303 -9 1158 184 49 153 chr12 123101133 123101687 -21180802 + L1MC5 LINE L1 7096 7591 -370 1041 163 0 0 chr12 123101698 123101858 -21180631 - AluJb SINE Alu -17 295 136 1214 49 0 0 chr12 123101934 123102078 -21180411 + L1PA4 LINE L1 6009 6152 -3 298 283 108 4 chr12 123102450 123102690 -21179799 + AluSx SINE Alu 38 302 0 388 233 67 60 chr12 123102857 123103007 -21179482 - MIR3 SINE MIR -55 153 3 294 344 8 16 chr12 123103070 123103195 -21179294 - MIR SINE MIR -70 192 69 494 211 42 0 chr12 123103694 123103789 -21178700 + MLT1L LTR MaLR 157 255 -360 828 233 39 131 chr12 123103797 123104287 -21178202 + MLT1H1 LTR MaLR 1 445 -97 324 228 98 114 chr12 123104443 123104636 -21177853 + MLT1J LTR MaLR 316 505 -6 5484 134 59 3 chr12 123104637 123104987 -21177502 - Tigger1 DNA MER2_type 0 2418 2089 2253 52 52 46 chr12 123104987 123105294 -21177195 - AluY SINE Alu -2 309 1 5484 134 59 3 chr12 123105294 123105828 -21176661 - Tigger1 DNA MER2_type -329 2089 1485 4102 117 10 0 chr12 123105834 123106432 -21176057 + Tigger1 DNA MER2_type 380 983 -1435 2063 97 0 0 chr12 123107157 123107416 -21175073 + AluSx SINE Alu 11 269 -43 29 60 0 0 chr12 123107633 123107683 -21174806 + AT_rich Low_complexity Low_complexity 1 50 0 1348 149 9 0 chr12 123107778 123107999 -21174490 + L1MA8 LINE L1 6005 6227 -64 853 171 0 7 chr12 123107999 123108145 -21174344 - AluJb SINE Alu -9 303 159 459 0 0 0 chr12 123108301 123108352 -21174137 + (TA)n Simple_repeat Simple_repeat 1 51 0 2145 234 21 7 chr12 123108358 123108930 -21173559 + L1M4 LINE L1 2557 3136 -3010 765 165 0 25 chr12 123108952 123109073 -21173416 + AluJo SINE Alu 11 128 -184 317 337 70 22 chr12 123109225 123109498 -21172991 + L1MC5 LINE L1 7498 7783 -178 683 166 11 112 chr12 123109589 123109669 -21172820 + MER96B DNA MER1_type? 250 302 -115 1655 173 38 3 chr12 123109669 123109958 -21172531 + AluJb SINE Alu 13 311 -1 683 166 11 112 chr12 123109958 123110064 -21172425 + MER96B DNA MER1_type? 302 417 0 661 242 99 28 chr12 123110760 123110971 -21171518 + MIR SINE MIR 37 262 0 903 196 6 6 chr12 123111070 123111249 -21171240 + AluJo SINE Alu 120 298 -14 2110 135 3 0 chr12 123111277 123111580 -21170909 + AluSx SINE Alu 1 304 -8 21 82 0 0 chr12 123111599 123111648 -21170841 + AT_rich Low_complexity Low_complexity 1 49 0 586 267 27 34 chr12 123112209 123112387 -21170102 + MIR SINE MIR 37 213 -49 948 170 40 71 chr12 123112387 123112611 -21169878 - MER20 DNA MER1_type -2 217 1 586 267 27 34 chr12 123112611 123112647 -21169842 + MIR SINE MIR 213 248 -14 245 254 0 0 chr12 123113668 123113723 -21168766 + CT-rich Low_complexity Low_complexity 1 55 0 5012 142 12 64 chr12 123114099 123114837 -21167652 - L1MA4 LINE L1 -11 6289 5514 242 0 61 0 chr12 123114837 123114870 -21167619 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2059 114 0 47 chr12 123114870 123115020 -21167469 - AluSx SINE Alu -29 283 152 2559 69 0 0 chr12 123115020 123115324 -21167165 - AluY SINE Alu -7 304 1 2059 114 0 47 chr12 123115324 123115470 -21167019 - AluSx SINE Alu -160 152 1 5012 142 12 64 chr12 123115470 123115696 -21166793 - L1MA4 LINE L1 -784 5516 5374 477 110 0 0 chr12 123115705 123115778 -21166711 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 3465 188 6 6 chr12 123115778 123116484 -21166005 - L1 LINE L1 -813 5333 4641 291 317 78 14 chr12 123116486 123116628 -21165861 - MIR SINE MIR -96 166 16 404 234 75 0 chr12 123116772 123116866 -21165623 - MER91B DNA MER1_type 0 190 90 531 181 29 101 chr12 123116880 123116925 -21165564 - MER91B DNA MER1_type -60 130 83 1817 192 33 6 chr12 123116925 123117259 -21165230 - MER2 DNA MER2_type 0 344 2 531 181 29 101 chr12 123117259 123117351 -21165138 - MER91B DNA MER1_type -107 83 3 445 301 30 45 chr12 123117823 123118022 -21164467 + MIR SINE MIR 16 211 -51 2130 136 0 3 chr12 123118181 123118512 -21163977 + AluSx SINE Alu 4 333 0 644 295 62 13 chr12 123119189 123119413 -21163076 + MIR SINE MIR 28 262 0 515 187 105 41 chr12 123119919 123120090 -21162399 + MER96B DNA MER1_type? 2 183 -234 189 0 0 0 chr12 123120788 123120809 -21161680 + (T)n Simple_repeat Simple_repeat 1 21 0 183 80 0 0 chr12 123120905 123120930 -21161559 + (GGA)n Simple_repeat Simple_repeat 2 26 0 224 331 6 12 chr12 123122022 123122194 -21160295 + GA-rich Low_complexity Low_complexity 2 172 0 202 24 0 98 chr12 123123044 123123085 -21159404 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 787 241 16 40 chr12 123123214 123123467 -21159022 + L1ME3A LINE L1 5663 5909 -261 361 292 22 56 chr12 123124518 123124696 -21157793 - L2 LINE L2 -1 3312 3141 230 170 70 0 chr12 123124702 123124802 -21157687 + (TA)n Simple_repeat Simple_repeat 2 108 0 9741 70 22 35 chr12 123124806 123126182 -21156307 - SVA Other Other 0 1386 29 216 0 0 0 chr12 123126220 123126244 -21156245 + (GGGAGA)n Simple_repeat Simple_repeat 3 26 0 48 67 0 0 chr12 123126248 123126338 -21156151 + AT_rich Low_complexity Low_complexity 1 90 0 188 135 54 0 chr12 123126344 123126418 -21156071 + (TA)n Simple_repeat Simple_repeat 1 78 0 250 221 80 80 chr12 123126464 123126577 -21155912 - L2 LINE L2 -178 3135 3023 2831 224 73 30 chr12 123126588 123127360 -21155129 - L1ME1 LINE L1 -5 6161 5363 271 257 24 6 chr12 123127517 123127660 -21154829 - L2 LINE L2 -337 2977 2831 2013 266 79 99 chr12 123127711 123128306 -21154183 - MLT1G LTR MaLR -12 578 1 219 284 62 25 chr12 123128375 123128456 -21154033 - L2 LINE L2 -72 3200 3117 541 264 126 19 chr12 123129029 123129188 -21153301 + MER5B DNA MER1_type 3 178 0 714 239 75 38 chr12 123129430 123129643 -21152846 - MIR SINE MIR -10 252 32 1685 156 7 3 chr12 123130473 123130762 -21151727 + AluJo SINE Alu 1 290 -22 1752 129 25 11 chr12 123130762 123131079 -21151410 - AluSg SINE Alu 0 321 1 346 300 63 49 chr12 123131987 123132210 -21150279 + L2 LINE L2 2263 2488 -826 432 296 82 46 chr12 123132230 123132472 -21150017 - MIR SINE MIR -6 256 10 938 226 78 16 chr12 123132943 123133186 -21149303 - MIR SINE MIR 0 262 5 428 269 57 33 chr12 123133192 123133351 -21149138 + MIR SINE MIR 13 185 -62 535 347 26 40 chr12 123133792 123134228 -21148261 - L1ME3A LINE L1 -288 5881 5445 2619 209 121 70 chr12 123135205 123135416 -21147073 - MER21B LTR ERV1 0 863 664 947 163 19 6 chr12 123135416 123135576 -21146913 - FRAM SINE Alu -4 162 1 2619 209 121 70 chr12 123135576 123136167 -21146322 - MER21B LTR ERV1 -199 664 20 330 276 13 0 chr12 123136175 123136251 -21146238 - MER21B LTR ERV1 -767 96 20 251 306 28 0 chr12 123136277 123136349 -21146140 - MER21B LTR ERV1 -774 89 16 1654 180 3 3 chr12 123136528 123136828 -21145661 - AluJo SINE Alu -8 304 5 183 242 126 32 chr12 123136926 123137021 -21145468 - MIR SINE MIR -64 144 41 997 162 0 6 chr12 123137580 123137747 -21144742 + FRAM SINE Alu 2 167 -9 235 70 23 23 chr12 123137750 123137793 -21144696 + (GA)n Simple_repeat Simple_repeat 2 44 0 378 298 89 84 chr12 123137843 123138094 -21144395 - L1MC4a LINE L1 -1978 5830 5575 1979 129 3 19 chr12 123138094 123138232 -21144257 + AluSq SINE Alu 1 140 -173 2041 123 0 0 chr12 123138232 123138533 -21143956 + AluSg SINE Alu 1 301 -9 1979 129 3 19 chr12 123138533 123138712 -21143777 + AluSq SINE Alu 140 313 0 378 298 89 84 chr12 123138712 123138889 -21143600 - L1MC4a LINE L1 -2233 5575 5400 327 303 11 0 chr12 123139003 123139092 -21143397 + MIR3 SINE MIR 85 174 -34 318 311 109 42 chr12 123139664 123139857 -21142632 - L1ME LINE L1 -628 5538 5333 1813 198 113 32 chr12 123140038 123140103 -21142386 - L1ME1 LINE L1 -283 5952 5894 2142 102 17 0 chr12 123140103 123140398 -21142091 - AluSx SINE Alu -12 300 1 1813 198 113 32 chr12 123140398 123140826 -21141663 - L1ME1 LINE L1 -341 5894 5419 318 104 21 0 chr12 123140833 123140881 -21141608 - Alu SINE Alu -6 296 248 661 191 9 0 chr12 123140886 123140996 -21141493 - FLAM_C SINE Alu -31 112 2 2701 232 29 35 chr12 123140998 123141872 -21140617 - L1ME1 LINE L1 -782 5433 4566 463 238 71 36 chr12 123141854 123142022 -21140467 - L1ME1 LINE L1 -3653 2562 2389 * 602 300 18 13 chr12 123142039 123142266 -21140223 - L1ME1 LINE L1 -6132 264 37 468 323 145 33 chr12 123142511 123143062 -21139427 + L1M4 LINE L1 2324 2936 -3210 581 264 7 7 chr12 123143130 123143274 -21139215 - L1ME3 LINE L1 -7 6155 6012 837 153 0 0 chr12 123143380 123143498 -21138991 + FLAM_C SINE Alu 1 118 -15 264 309 11 0 chr12 123143558 123143652 -21138837 + L1M4 LINE L1 4217 4311 -1835 1419 294 56 34 chr12 123144437 123145063 -21137426 + MLT2F LTR ERVL 24 663 0 1955 181 12 55 chr12 123145082 123145486 -21137003 - MLT1B LTR MaLR 0 390 4 466 246 160 27 chr12 123145542 123145729 -21136760 - MIR SINE MIR -18 244 33 2064 182 0 16 chr12 123145873 123146242 -21136247 - MLT1B LTR MaLR -5 385 23 1390 165 29 37 chr12 123146282 123146555 -21135934 + AluJo SINE Alu 42 312 0 329 287 218 56 chr12 123147002 123147218 -21135271 + MIR SINE MIR 7 257 -5 991 131 0 0 chr12 123147321 123147466 -21135023 + THE1C LTR MaLR 231 375 0 452 333 85 28 chr12 123147510 123147535 -21134954 - HAL1 LINE L1 -10 2497 2475 446 167 0 0 chr12 123147535 123147613 -21134876 + MER116 DNA Mariner 3 80 0 452 333 85 28 chr12 123147613 123147941 -21134548 - HAL1 LINE L1 -32 2475 2124 241 292 20 9 chr12 123148810 123148900 -21133589 - MIR SINE MIR -61 147 60 209 196 22 0 chr12 123148943 123148989 -21133500 + MIR SINE MIR 82 128 -80 360 64 0 0 chr12 123149051 123149098 -21133391 + (T)n Simple_repeat Simple_repeat 1 47 0 372 265 9 54 chr12 123149143 123149292 -21133197 + MIR SINE MIR 18 154 -76 1910 123 3 7 chr12 123149300 123149600 -21132889 + AluSx SINE Alu 1 299 -13 558 260 91 64 chr12 123149704 123149918 -21132571 + L2 LINE L2 2996 3223 -90 1732 143 3 7 chr12 123149918 123150248 -21132241 - AluJb SINE Alu 0 329 1 558 260 91 64 chr12 123150248 123150328 -21132161 + L2 LINE L2 3223 3299 -14 231 88 0 0 chr12 123150330 123150364 -21132125 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 1054 196 11 54 chr12 123151272 123151451 -21131038 + Charlie4 DNA MER1_type 17 183 -325 2169 131 0 0 chr12 123151451 123151756 -21130733 + AluSx SINE Alu 1 305 -7 1054 196 11 54 chr12 123151756 123151836 -21130653 + Charlie4 DNA MER1_type 183 265 -243 758 98 27 9 chr12 123151857 123151969 -21130520 + FLAM_C SINE Alu 14 127 -16 1149 157 23 9 chr12 123151976 123152193 -21130296 + AluJo SINE Alu 1 220 -92 2014 131 0 3 chr12 123152240 123152546 -21129943 + AluSx SINE Alu 1 305 -7 360 43 0 0 chr12 123153533 123153579 -21128910 + (CA)n Simple_repeat Simple_repeat 2 47 0 237 65 0 0 chr12 123153609 123153640 -21128849 + (T)n Simple_repeat Simple_repeat 1 31 0 273 119 0 0 chr12 123153704 123153746 -21128743 + (A)n Simple_repeat Simple_repeat 1 42 0 242 393 8 0 chr12 123154571 123154693 -21127796 + C-rich Low_complexity Low_complexity 3 125 0 223 322 23 23 chr12 123154632 123154803 -21127686 + CT-rich Low_complexity Low_complexity 2 172 0 * 212 346 6 26 chr12 123154876 123155032 -21127457 + CT-rich Low_complexity Low_complexity 2 154 0 297 0 0 0 chr12 123155764 123155797 -21126692 + (TG)n Simple_repeat Simple_repeat 2 34 0 196 179 32 21 chr12 123155824 123155919 -21126570 + (TA)n Simple_repeat Simple_repeat 1 96 0 356 342 13 7 chr12 123155949 123156104 -21126385 - MIR SINE MIR -3 259 104 192 158 0 0 chr12 123157181 123157219 -21125270 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 2149 88 0 14 chr12 123157541 123157836 -21124653 + AluSx SINE Alu 1 291 -21 657 239 0 0 chr12 123158447 123158627 -21123862 + GA-rich Low_complexity Low_complexity 1 180 0 206 204 0 19 chr12 123158659 123158713 -21123776 + A-rich Low_complexity Low_complexity 5 57 0 267 173 0 0 chr12 123159060 123159112 -21123377 + (CA)n Simple_repeat Simple_repeat 2 53 0 516 275 43 43 chr12 123159399 123159606 -21122883 + MIR SINE MIR 17 223 -39 296 231 26 26 chr12 123160311 123160389 -21122100 - L2 LINE L2 0 3272 3195 238 122 0 61 chr12 123160866 123160915 -21121574 + MIR SINE MIR 109 154 -108 346 266 101 0 chr12 123160945 123161054 -21121435 + L2 LINE L2 3188 3307 -6 198 269 45 30 chr12 123161282 123161349 -21121140 - L2 LINE L2 0 3313 3246 219 208 83 0 chr12 123161499 123161547 -21120942 + L2 LINE L2 3258 3309 -4 196 282 71 35 chr12 123161698 123161783 -21120706 - MER5A DNA MER1_type -48 141 54 219 88 0 0 chr12 123161919 123161953 -21120536 + (CA)n Simple_repeat Simple_repeat 2 35 0 273 29 0 0 chr12 123164747 123164781 -21117708 + (CCGCG)n Simple_repeat Simple_repeat 4 37 0 267 31 0 0 chr12 123165400 123165432 -21117057 + (TG)n Simple_repeat Simple_repeat 1 32 0 225 0 0 0 chr12 123167251 123167276 -21115213 + (CA)n Simple_repeat Simple_repeat 2 26 0 301 262 0 67 chr12 123168218 123168382 -21114107 + A-rich Low_complexity Low_complexity 5 157 0 283 167 0 0 chr12 123168597 123168645 -21113844 + A-rich Low_complexity Low_complexity 1 48 0 185 250 0 0 chr12 123168762 123168818 -21113671 + A-rich Low_complexity Low_complexity 1 56 0 269 341 0 0 chr12 123168961 123169043 -21113446 + G-rich Low_complexity Low_complexity 1 82 0 898 242 11 26 chr12 123169637 123169901 -21112588 + MIR SINE MIR 3 262 0 1734 59 5 9 chr12 123169901 123170122 -21112367 - L1PA8 LINE L1 -8 6164 5945 1838 149 0 0 chr12 123170138 123170454 -21112035 - AluJo SINE Alu 0 316 1 246 319 164 9 chr12 123170468 123170584 -21111905 - MIR SINE MIR -5 257 124 1395 193 21 0 chr12 123170620 123170900 -21111589 + AluJb SINE Alu 22 307 -5 1932 133 7 3 chr12 123170993 123171287 -21111202 + AluSx SINE Alu 1 295 -17 2001 246 79 21 chr12 123171287 123171847 -21110642 + MLT1G1 LTR MaLR 4 595 0 335 243 200 32 chr12 123171847 123172032 -21110457 - MIR SINE MIR -29 233 18 24 0 0 0 chr12 123172510 123172534 -21109955 + AT_rich Low_complexity Low_complexity 1 24 0 579 275 16 21 chr12 123172561 123172750 -21109739 - MIR SINE MIR -73 189 2 1838 107 56 102 chr12 123173068 123173461 -21109028 + THE1C LTR MaLR 1 375 0 694 300 67 57 chr12 123173481 123173901 -21108588 - MLT1K LTR MaLR -20 568 145 391 252 8 59 chr12 123173921 123174040 -21108449 + MIR SINE MIR 148 260 -2 1530 155 114 0 chr12 123174182 123174446 -21108043 + AluSx SINE Alu 1 294 -18 248 273 124 16 chr12 123174567 123174688 -21107801 - MIR3 SINE MIR -67 141 8 418 327 0 0 chr12 123174839 123174952 -21107537 - MIR SINE MIR -149 113 1 312 320 49 4 chr12 123175026 123175158 -21107331 + MIR SINE MIR 16 149 -62 525 268 70 0 chr12 123175536 123175693 -21106796 + MIR SINE MIR 77 244 -18 2057 125 3 0 chr12 123175721 123176024 -21106465 + AluSx SINE Alu 1 304 -8 373 246 18 18 chr12 123176089 123176203 -21106286 + L1ME LINE L1 5647 5760 -361 3358 112 16 2 chr12 123176385 123176875 -21105614 + L1PA14 LINE L1 5665 6161 0 244 275 87 0 chr12 123176953 123177022 -21105467 + HAL1b LINE L1 1225 1299 -49 437 193 11 0 chr12 123177039 123177127 -21105362 - L1MC4 LINE L1 -29 8013 7925 345 286 22 22 chr12 123177147 123177325 -21105164 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 349 270 37 12 chr12 123177367 123177530 -21104959 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 308 296 0 23 chr12 123177533 123177621 -21104868 - L1MC4 LINE L1 -1340 6702 6617 * 433 320 0 0 chr12 123177593 123177647 -21104842 + (TATATG)n Simple_repeat Simple_repeat 3 56 -118 319 232 0 63 chr12 123177647 123177742 -21104747 - L1MC4 LINE L1 -1340 6702 6614 479 294 0 11 chr12 123177659 123177731 -21104758 + (CATATA)n Simple_repeat Simple_repeat 1 72 -157 342 229 0 83 chr12 123177731 123177827 -21104662 - L1MC4 LINE L1 -1340 6702 6615 479 294 0 11 chr12 123177827 123177891 -21104598 + (CATATA)n Simple_repeat Simple_repeat 72 229 0 470 206 24 56 chr12 123177918 123178044 -21104445 - L1MC4 LINE L1 -138 7904 7783 1265 215 41 60 chr12 123178608 123179027 -21103462 + L1ME3A LINE L1 5546 5956 -214 2145 114 3 7 chr12 123179609 123179899 -21102590 + AluSq SINE Alu 1 289 -24 2151 97 7 3 chr12 123179990 123180280 -21102209 + AluSg SINE Alu 1 291 -19 3423 81 14 19 chr12 123180280 123180752 -21101737 - L1PA13 LINE L1 -20 6143 5672 2225 110 3 0 chr12 123180908 123181198 -21101291 - AluSx SINE Alu -21 291 1 316 222 230 0 chr12 123181206 123181332 -21101157 - MIR SINE MIR -69 193 39 474 188 5 168 chr12 123181429 123181631 -21100858 + MIR SINE MIR 81 249 -13 634 278 37 0 chr12 123181673 123181860 -21100629 - MIR SINE MIR 0 262 69 575 136 0 18 chr12 123182092 123182202 -21100287 - AluSp/q SINE Alu 0 313 206 742 246 153 24 chr12 123182613 123182941 -21099548 - L1ME1 LINE L1 -18 6148 5809 25 51 0 0 chr12 123183134 123183173 -21099316 + AT_rich Low_complexity Low_complexity 1 39 0 2131 129 0 20 chr12 123183389 123183691 -21098798 + AluSx SINE Alu 1 296 -16 572 258 26 107 chr12 123183760 123184031 -21098458 - L1ME1 LINE L1 -396 5725 5477 300 234 92 35 chr12 123184537 123184678 -21097811 - MIR3 SINE MIR -51 157 9 234 259 0 0 chr12 123184982 123185036 -21097453 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 212 237 0 34 chr12 123185081 123185140 -21097349 + A-rich Low_complexity Low_complexity 1 57 0 250 327 167 18 chr12 123185305 123185473 -21097016 - MIR SINE MIR -50 212 20 1295 147 34 30 chr12 123185625 123185787 -21096702 - L1MA7 LINE L1 -6 6285 6120 2506 67 0 0 chr12 123185787 123186086 -21096403 - AluY SINE Alu -12 299 1 1295 147 34 30 chr12 123186086 123186188 -21096301 - L1MA7 LINE L1 -171 6120 6020 36 0 0 0 chr12 123186189 123186225 -21096264 + AT_rich Low_complexity Low_complexity 1 36 0 3391 136 20 11 chr12 123186274 123186826 -21095663 - L1MA7 LINE L1 -261 6030 5474 2515 168 46 13 chr12 123186818 123187293 -21095196 - L1MC3 LINE L1 -14 7771 7281 * 1140 239 136 62 chr12 123187305 123187695 -21094794 + MER39 LTR ERV1 1 618 -89 2284 92 0 0 chr12 123187695 123188022 -21094467 + AluSg SINE Alu 1 327 0 1140 239 136 62 chr12 123188022 123188118 -21094371 + MER39 LTR ERV1 618 706 -1 1068 195 9 0 chr12 123188120 123188330 -21094159 - L1MC3 LINE L1 -527 7258 7047 228 303 40 10 chr12 123188478 123188577 -21093912 + MIR SINE MIR 17 118 -90 1291 244 76 72 chr12 123188579 123189117 -21093372 - MLT1H1 LTR MaLR 0 555 16 264 30 0 0 chr12 123189120 123189153 -21093336 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr12 123189153 123189176 -21093313 + AT_rich Low_complexity Low_complexity 1 23 0 1746 181 0 4 chr12 123189215 123189492 -21092997 - AluJo SINE Alu -36 276 1 873 152 8 0 chr12 123189495 123189627 -21092862 - AluJb SINE Alu -179 133 1 186 283 19 0 chr12 123189723 123189776 -21092713 - MIR SINE MIR -112 96 43 21 0 0 0 chr12 123190237 123190258 -21092231 + AT_rich Low_complexity Low_complexity 1 21 0 2049 110 23 32 chr12 123190285 123190593 -21091896 - AluSx SINE Alu -7 305 1 228 67 0 0 chr12 123191475 123191505 -21090984 + (TTATA)n Simple_repeat Simple_repeat 1 30 0 1043 216 5 15 chr12 123191548 123191752 -21090737 + MER20 DNA MER1_type 2 203 -16 231 224 20 0 chr12 123191803 123191852 -21090637 - MLT1J1 LTR MaLR -52 394 345 2768 92 8 5 chr12 123191904 123192272 -21090217 - THE1C LTR MaLR -2 373 5 265 326 88 26 chr12 123192502 123192695 -21089794 + L2 LINE L2 2497 2701 -613 681 256 158 32 chr12 123193017 123193455 -21089034 - HAL1 LINE L1 -33 2474 1982 368 327 42 6 chr12 123193490 123193658 -21088831 + L2 LINE L2 2689 2862 -452 2710 270 84 42 chr12 123193851 123195078 -21087411 + L2 LINE L2 969 2246 -1068 310 334 69 47 chr12 123195300 123195617 -21086872 - L1MEd LINE L1 -5559 560 237 294 116 58 14 chr12 123195634 123195703 -21086786 + CT-rich Low_complexity Low_complexity 4 75 0 4167 152 48 3 chr12 123195736 123196212 -21086277 - L1MA9 LINE L1 -30 6282 5760 447 78 0 0 chr12 123196212 123196276 -21086213 + (TG)n Simple_repeat Simple_repeat 2 65 0 4167 152 48 3 chr12 123196276 123196529 -21085960 - L1MA9 LINE L1 -552 5760 5520 261 272 40 48 chr12 123196695 123196820 -21085669 + L2 LINE L2 3108 3231 -82 810 317 99 44 chr12 123196870 123197305 -21085184 + LTR16C LTR ERVL 33 491 0 411 162 29 0 chr12 123197389 123197457 -21085032 + AluJ/FLAM SINE Alu 1 70 -232 506 150 0 0 chr12 123197457 123197537 -21084952 - L1MA9 LINE L1 -331 5981 5902 1207 186 0 18 chr12 123197539 123197760 -21084729 + AluJo SINE Alu 81 297 -15 326 259 82 41 chr12 123198016 123198163 -21084326 - L1ME LINE L1 -404 5717 5565 1524 263 78 43 chr12 123198770 123199030 -21083459 + MLT1E LTR MaLR 23 273 -320 2102 128 10 19 chr12 123199030 123199343 -21083146 + AluJo SINE Alu 1 310 -2 1524 263 78 43 chr12 123199343 123199634 -21082855 + MLT1E LTR MaLR 273 593 0 21 0 0 0 chr12 123199811 123199832 -21082657 + AT_rich Low_complexity Low_complexity 1 21 0 424 160 0 13 chr12 123199833 123199908 -21082581 - FLAM SINE Alu -26 117 44 1105 146 0 0 chr12 123200034 123200192 -21082297 - AluSg/x SINE Alu -22 290 133 1773 171 10 3 chr12 123200546 123200839 -21081650 + AluJb SINE Alu 1 295 -17 2325 162 78 55 chr12 123201324 123201358 -21081131 + L1MD2 LINE L1 5795 5827 -532 2435 96 3 0 chr12 123201358 123201670 -21080819 + AluSp SINE Alu 1 313 0 2325 162 78 55 chr12 123201670 123202185 -21080304 + L1MD2 LINE L1 5827 6357 -2 1646 197 3 0 chr12 123202449 123202733 -21079756 - AluJb SINE Alu -25 287 3 556 269 14 0 chr12 123202835 123202980 -21079509 - MIR SINE MIR -80 182 36 1360 146 0 9 chr12 123203616 123203835 -21078654 - AluSq SINE Alu -5 308 92 23 54 0 0 chr12 123203977 123204014 -21078475 + AT_rich Low_complexity Low_complexity 1 37 0 1732 231 44 24 chr12 123204080 123204325 -21078164 + MLT1C LTR MaLR 1 261 -206 2179 160 11 78 chr12 123204325 123204787 -21077702 - MSTB1 LTR MaLR 0 432 2 1732 231 44 24 chr12 123204787 123204999 -21077490 + MLT1C LTR MaLR 261 467 0 1928 150 10 0 chr12 123205074 123205381 -21077108 - AluSx SINE Alu -2 310 1 384 209 133 9 chr12 123205721 123205826 -21076663 + L2 LINE L2 3155 3272 0 2211 81 0 30 chr12 123206081 123206378 -21076111 - AluY SINE Alu -23 288 1 696 224 159 0 chr12 123206442 123206512 -21075977 - L1MB7 LINE L1 0 6184 6126 1748 158 3 13 chr12 123206512 123206810 -21075679 + AluSg SINE Alu 1 295 -15 696 224 159 0 chr12 123206810 123206953 -21075536 - L1MB7 LINE L1 -58 6126 5937 1448 219 91 82 chr12 123207484 123207717 -21074772 + MLT1E3 LTR MaLR 6 235 -389 1639 208 0 0 chr12 123207717 123208015 -21074474 + AluJb SINE Alu 1 298 -14 1448 219 91 82 chr12 123208015 123208394 -21074095 + MLT1E3 LTR MaLR 235 624 0 991 163 6 0 chr12 123208703 123208863 -21073626 + L1MB8 LINE L1 5372 5532 -646 1194 204 0 0 chr12 123208863 123209074 -21073415 + MER2 DNA MER2_type 1 211 -134 239 219 0 0 chr12 123209120 123209161 -21073328 + MER2 DNA MER2_type 285 325 -20 3107 179 37 12 chr12 123209163 123209813 -21072676 + L1MB8 LINE L1 5507 6172 -6 424 350 16 20 chr12 123210154 123210408 -21072081 + HAL1 LINE L1 2225 2477 -30 412 192 0 0 chr12 123210408 123210486 -21072003 - MER116 DNA Mariner 0 80 3 2462 116 36 0 chr12 123210555 123210917 -21071572 - THE1C LTR MaLR 0 375 1 1665 188 0 11 chr12 123211126 123211408 -21071081 + AluJo SINE Alu 3 281 -31 188 35 35 0 chr12 123211412 123211441 -21071048 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr12 123211696 123211724 -21070765 + AT_rich Low_complexity Low_complexity 1 28 0 413 276 79 93 chr12 123211744 123211841 -21070648 - LTR16B LTR ERVL -3 461 364 1272 183 3 108 chr12 123211841 123211972 -21070517 + AluJo SINE Alu 5 148 -154 1837 144 3 21 chr12 123211972 123212263 -21070226 + AluSx SINE Alu 1 286 -26 1272 183 3 108 chr12 123212263 123212464 -21070025 + AluJo SINE Alu 148 302 0 2375 57 3 0 chr12 123212471 123212753 -21069736 + AluY SINE Alu 5 287 -24 216 0 0 0 chr12 123212763 123212787 -21069702 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 413 276 79 93 chr12 123212787 123213101 -21069388 - LTR16B LTR ERVL -115 349 37 223 264 47 93 chr12 123213239 123213368 -21069121 - MIR SINE MIR -133 129 7 1474 176 32 21 chr12 123213815 123214099 -21068390 - AluJo SINE Alu -20 292 6 1812 198 3 22 chr12 123214105 123214474 -21068015 + MLT1B LTR MaLR 24 385 -5 246 229 202 44 chr12 123214618 123214801 -21067688 + MIR SINE MIR 33 244 -18 2005 170 18 50 chr12 123214857 123215257 -21067232 + MLT1B LTR MaLR 4 390 0 1156 311 70 18 chr12 123215276 123215903 -21066586 - MLT2F LTR ERVL 0 663 4 753 123 0 0 chr12 123216101 123216207 -21066282 - AluSg/x SINE Alu -8 304 199 21 36 0 0 chr12 123216240 123216268 -21066221 + AT_rich Low_complexity Low_complexity 1 28 0 358 290 10 10 chr12 123216319 123216419 -21066070 - L2 LINE L2 -4 3309 3210 2892 169 57 34 chr12 123216926 123217546 -21064943 - LTR27 LTR ERV1 0 636 3 2109 137 0 0 chr12 123218032 123218316 -21064173 - AluSx SINE Alu -28 284 1 1817 118 30 44 chr12 123218333 123218630 -21063859 - AluSq SINE Alu -20 293 1 583 90 0 0 chr12 123218736 123218814 -21063675 - MADE1 DNA Mariner -2 78 1 2208 110 10 3 chr12 123219199 123219509 -21062980 + AluSx SINE Alu 1 312 0 2138 111 14 0 chr12 123219847 123220135 -21062354 - AluSx SINE Alu -20 292 1 618 82 0 0 chr12 123220296 123220381 -21062108 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 2239 96 0 7 chr12 123220394 123220685 -21061804 - AluSx SINE Alu -23 289 1 1228 129 0 74 chr12 123221532 123221749 -21060740 - AluJo SINE Alu -98 214 14 202 246 0 33 chr12 123221759 123221820 -21060669 - MIR SINE MIR -119 143 85 243 79 0 0 chr12 123222408 123222446 -21060043 + (TG)n Simple_repeat Simple_repeat 1 38 0 299 130 19 0 chr12 123222446 123222500 -21059989 + GA-rich Low_complexity Low_complexity 2 56 0 1151 112 6 0 chr12 123222503 123222682 -21059807 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 304 0 89 0 chr12 123222788 123222844 -21059645 + (TA)n Simple_repeat Simple_repeat 1 61 0 2179 115 0 0 chr12 123222868 123223156 -21059333 - AluSx SINE Alu -24 288 1 855 167 7 0 chr12 123223184 123223322 -21059167 - AluJo SINE Alu -173 139 1 2413 68 10 0 chr12 123223332 123223625 -21058864 - AluY SINE Alu -15 296 1 520 244 50 25 chr12 123223650 123223810 -21058679 - MIR SINE MIR -11 251 88 866 187 40 67 chr12 123223888 123224113 -21058376 - MER20 DNA MER1_type 0 219 1 2022 130 13 0 chr12 123224193 123224492 -21057997 - AluSx SINE Alu -9 303 1 1352 148 0 0 chr12 123224754 123224950 -21057539 + AluSx SINE Alu 11 206 -106 579 165 0 0 chr12 123225104 123225213 -21057276 + CT-rich Low_complexity Low_complexity 2 110 0 1897 128 0 18 chr12 123225214 123225488 -21057001 - AluSc SINE Alu -38 271 3 1066 73 22 7 chr12 123225488 123225624 -21056865 - AluSq/x SINE Alu -175 138 1 1552 137 0 101 chr12 123225783 123226090 -21056399 + AluSx SINE Alu 1 276 -36 915 130 0 0 chr12 123227050 123227173 -21055316 + FLAM_C SINE Alu 3 125 -18 22 56 0 0 chr12 123227173 123227209 -21055280 + AT_rich Low_complexity Low_complexity 1 36 0 1830 150 14 7 chr12 123227348 123227634 -21054855 + AluJo SINE Alu 7 294 -18 192 245 38 19 chr12 123229217 123229270 -21053219 + L2 LINE L2 2649 2702 -612 1902 108 3 74 chr12 123229299 123229622 -21052867 - AluSx SINE Alu -12 300 1 337 333 49 37 chr12 123229627 123229789 -21052700 + L2 LINE L2 2693 2856 -458 878 123 29 29 chr12 123229863 123230001 -21052488 + FLAM_C SINE Alu 6 143 0 364 296 26 26 chr12 123230054 123230206 -21052283 + MLT1H LTR MaLR 105 256 -293 312 263 34 25 chr12 123230324 123230442 -21052047 + MLT1H LTR MaLR 431 549 0 1592 164 0 75 chr12 123230453 123230787 -21051702 - AluJo SINE Alu 0 311 1 2356 100 0 7 chr12 123230851 123231152 -21051337 - AluSg SINE Alu -11 299 1 534 286 95 44 chr12 123231188 123231482 -21051007 + L2 LINE L2 3005 3313 0 2117 150 0 0 chr12 123231538 123231838 -21050651 + AluSx SINE Alu 1 300 -12 1475 188 28 3 chr12 123231907 123232194 -21050295 + AluJb SINE Alu 14 307 -5 204 125 0 0 chr12 123232294 123232326 -21050163 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 1683 146 89 0 chr12 123232341 123232622 -21049867 + AluSg SINE Alu 1 306 -4 25 0 0 0 chr12 123232634 123232659 -21049830 + AT_rich Low_complexity Low_complexity 1 25 0 260 286 95 42 chr12 123232820 123233009 -21049480 - L2 LINE L2 -213 3059 2861 1820 93 35 59 chr12 123233063 123233374 -21049115 - AluSq SINE Alu 0 304 1 823 266 23 43 chr12 123233381 123233637 -21048852 - MIR SINE MIR -10 252 2 2001 129 6 35 chr12 123233692 123234009 -21048480 - AluJb SINE Alu -4 308 1 186 294 40 87 chr12 123234877 123235003 -21047486 - MIR SINE MIR -28 234 115 317 302 54 58 chr12 123235066 123235238 -21047251 + MIR3 SINE MIR 7 176 -32 278 259 99 0 chr12 123235513 123235594 -21046895 + MLT1G1 LTR MaLR 17 105 -490 2239 135 0 0 chr12 123235595 123235907 -21046582 + AluSx SINE Alu 1 312 0 207 195 0 24 chr12 123236475 123236516 -21045973 - L2 LINE L2 -12 3260 3221 * 390 308 151 11 chr12 123236482 123236667 -21045822 - MIR SINE MIR -13 249 39 24 0 0 0 chr12 123236756 123236780 -21045709 + AT_rich Low_complexity Low_complexity 1 24 0 2102 134 7 0 chr12 123236781 123237086 -21045403 + AluSx SINE Alu 1 307 0 402 270 133 9 chr12 123237232 123237599 -21044890 - LTR33 LTR ERVL -8 513 79 394 242 9 128 chr12 123237991 123238202 -21044287 + MIR SINE MIR 74 259 -3 2475 93 0 0 chr12 123238327 123238629 -21043860 - AluSx SINE Alu -10 302 1 180 0 0 0 chr12 123238716 123238736 -21043753 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 402 100 0 0 chr12 123238737 123238797 -21043692 + (TC)n Simple_repeat Simple_repeat 1 60 0 1864 148 4 4 chr12 123238802 123239073 -21043416 - AluSx SINE Alu -33 279 9 1794 174 10 7 chr12 123239184 123239482 -21043007 - AluJo SINE Alu -13 299 1 2072 119 3 3 chr12 123239645 123239961 -21042528 - AluSx SINE Alu 0 312 1 628 106 0 0 chr12 123239996 123240081 -21042408 - AluJ/FLAM SINE Alu -213 99 15 2012 149 3 16 chr12 123240126 123240442 -21042047 + AluJb SINE Alu 1 312 0 1664 176 31 104 chr12 123240480 123240723 -21041766 - MLT1B LTR MaLR 0 390 189 2099 137 6 13 chr12 123240723 123241036 -21041453 - AluSx SINE Alu -1 311 1 1664 176 31 104 chr12 123241036 123241213 -21041276 - MLT1B LTR MaLR -201 189 1 2143 105 0 11 chr12 123241225 123241535 -21040954 - AluSc SINE Alu 0 308 2 200 222 0 63 chr12 123241536 123241599 -21040890 - MIR SINE MIR -68 194 136 1785 192 0 0 chr12 123241602 123241941 -21040548 - AluJb SINE Alu 0 339 1 286 169 0 34 chr12 123241958 123242017 -21040472 - MER31A LTR ERV1 -76 409 353 525 234 0 9 chr12 123242017 123242124 -21040365 - MIR SINE MIR -110 152 47 198 71 0 0 chr12 123242132 123242160 -21040329 + (TATG)n Simple_repeat Simple_repeat 2 29 0 857 235 6 0 chr12 123242160 123242322 -21040167 - FRAM SINE Alu -3 163 1 525 278 112 6 chr12 123242913 123243082 -21039407 - MIR SINE MIR -20 242 56 1926 177 0 13 chr12 123243158 123243474 -21039015 - AluJb SINE Alu 0 312 1 2430 109 0 0 chr12 123243493 123243805 -21038684 - AluSx SINE Alu 0 312 1 291 260 21 106 chr12 123243805 123243945 -21038544 + L2 LINE L2 2997 3111 -202 2130 121 3 16 chr12 123243945 123244258 -21038231 - AluSx SINE Alu -3 309 1 291 260 21 106 chr12 123244258 123244352 -21038137 + L2 LINE L2 3111 3211 -102 507 114 9 174 chr12 123244383 123244512 -21037977 - L1MA4A LINE L1 -6 6294 6179 1930 177 0 3 chr12 123244538 123244848 -21037641 + AluJo SINE Alu 1 309 -3 2143 125 3 0 chr12 123244956 123245245 -21037244 + AluSx SINE Alu 1 290 -22 231 162 0 0 chr12 123246006 123246043 -21036446 - MIR SINE MIR -114 148 112 1618 252 35 11 chr12 123246057 123246510 -21035979 - MLT1G LTR MaLR 0 590 127 315 0 0 0 chr12 123246686 123246721 -21035768 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr12 123246744 123246772 -21035717 + AT_rich Low_complexity Low_complexity 1 28 0 1656 128 0 21 chr12 123246836 123246949 -21035540 + AluSx SINE Alu 24 138 -174 2251 121 0 0 chr12 123246949 123247247 -21035242 + AluSx SINE Alu 1 298 -14 1656 128 0 21 chr12 123247247 123247368 -21035121 + AluSx SINE Alu 138 253 -59 382 259 36 26 chr12 123247438 123247465 -21035024 - MIR SINE MIR -81 127 102 2288 121 0 13 chr12 123247465 123247823 -21034666 + AluSx SINE Alu 1 312 0 382 259 36 26 chr12 123247823 123247923 -21034566 - MIR SINE MIR -106 102 3 242 242 53 74 chr12 123248045 123248140 -21034349 - MIR SINE MIR -122 140 48 2396 84 3 0 chr12 123248166 123248463 -21034026 - AluY SINE Alu -13 298 1 315 284 0 14 chr12 123249458 123249532 -21032957 + L1MCa LINE L1 1995 2067 -4359 * 344 240 26 32 chr12 123249466 123249580 -21032909 - L1MCa LINE L1 -1337 6985 1995 340 248 0 76 chr12 123249499 123249604 -21032885 + L1MC4 LINE L1 6613 6709 -1333 * 330 284 64 63 chr12 123249571 123249951 -21032538 - L1M4 LINE L1 -4222 2422 1177 * 322 258 89 8 chr12 123249883 123250007 -21032482 + L1MCa LINE L1 1931 2064 -4362 * 219 69 0 0 chr12 123250012 123250041 -21032448 + (CA)n Simple_repeat Simple_repeat 2 30 0 387 255 68 40 chr12 123250088 123250298 -21032191 - MIR SINE MIR -30 232 24 211 190 89 76 chr12 123251353 123251432 -21031057 - L2 LINE L2 -3 3310 3231 562 246 28 0 chr12 123251520 123251662 -21030827 + MER5A DNA MER1_type 40 185 -4 339 25 0 0 chr12 123253436 123253476 -21029013 + (TG)n Simple_repeat Simple_repeat 2 41 0 2252 109 0 3 chr12 123253514 123253817 -21028672 + AluSx SINE Alu 1 302 -10 283 271 116 31 chr12 123253872 123254001 -21028488 - MIR SINE MIR -18 244 105 1732 176 3 23 chr12 123254183 123254300 -21028189 + AluJb SINE Alu 1 119 -193 1992 134 17 3 chr12 123254300 123254592 -21027897 - AluSx SINE Alu -16 296 1 1732 176 3 23 chr12 123254592 123254776 -21027713 + AluJb SINE Alu 119 296 -16 25 51 0 0 chr12 123254885 123254924 -21027565 + AT_rich Low_complexity Low_complexity 1 39 0 833 153 0 0 chr12 123254925 123255043 -21027446 - FLAM_C SINE Alu -15 118 1 803 209 82 69 chr12 123255043 123255277 -21027212 - MIR SINE MIR -4 258 15 2053 151 0 0 chr12 123255653 123255938 -21026551 + AluSx SINE Alu 3 287 -25 256 187 381 43 chr12 123255938 123256066 -21026423 - MIR SINE MIR -5 257 77 232 278 103 31 chr12 123256180 123256277 -21026212 - MIR3 SINE MIR -30 178 75 1874 95 32 71 chr12 123256290 123256573 -21025916 + AluSx SINE Alu 24 295 -17 2213 103 0 36 chr12 123256582 123256884 -21025605 + AluSg SINE Alu 11 301 -9 351 261 185 0 chr12 123256953 123257072 -21025417 + MIR3 SINE MIR 7 147 -61 297 185 19 0 chr12 123257679 123257733 -21024756 - MIR SINE MIR -139 123 69 2133 116 16 0 chr12 123257834 123257956 -21024533 + AluSx SINE Alu 5 124 -188 333 0 0 0 chr12 123257956 123257993 -21024496 + (CA)n Simple_repeat Simple_repeat 2 38 0 2133 116 16 0 chr12 123257993 123258173 -21024316 + AluSx SINE Alu 124 312 0 183 217 43 0 chr12 123258548 123258594 -21023895 - MIR SINE MIR -87 121 74 234 0 0 0 chr12 123259169 123259195 -21023294 + (CA)n Simple_repeat Simple_repeat 1 26 0 1088 169 76 109 chr12 123259299 123259601 -21022888 - AluJo SINE Alu -10 292 1 185 333 80 0 chr12 123259929 123260004 -21022485 - L2 LINE L2 -13 3300 3220 922 142 0 0 chr12 123260322 123260456 -21022033 + AluJo SINE Alu 1 134 -178 709 305 69 13 chr12 123260732 123260965 -21021524 - MIR SINE MIR 0 262 17 191 359 35 21 chr12 123261810 123261955 -21020534 + L2 LINE L2 2621 2767 -547 21 0 0 0 chr12 123262107 123262128 -21020361 + AT_rich Low_complexity Low_complexity 1 21 0 2289 135 0 0 chr12 123262156 123262467 -21020022 + AluSx SINE Alu 1 311 -1 406 204 39 68 chr12 123262530 123262633 -21019856 - L2 LINE L2 0 3313 3214 237 65 0 0 chr12 123263161 123263192 -21019297 + (TG)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr12 123263351 123263374 -21019115 + (A)n Simple_repeat Simple_repeat 1 23 0 2188 115 10 10 chr12 123264450 123264762 -21017727 - AluSx SINE Alu 0 312 1 1999 159 3 0 chr12 123264762 123265062 -21017427 - AluJb SINE Alu -10 302 1 204 270 90 60 chr12 123265118 123265218 -21017271 + MIR SINE MIR 63 165 -97 687 116 0 45 chr12 123265251 123265363 -21017126 + FLAM_C SINE Alu 27 133 -10 295 194 19 0 chr12 123266035 123266138 -21016351 + GA-rich Low_complexity Low_complexity 1 105 0 1927 134 32 7 chr12 123266329 123266612 -21015877 + AluJb SINE Alu 12 301 -11 364 221 42 70 chr12 123267235 123267377 -21015112 + MIR SINE MIR 106 242 -20 260 305 137 11 chr12 123267798 123267893 -21014596 - MIR SINE MIR -60 148 42 204 179 0 0 chr12 123268707 123268746 -21013743 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 282 106 0 0 chr12 123269018 123269065 -21013424 + (CA)n Simple_repeat Simple_repeat 1 47 0 448 274 54 0 chr12 123270597 123270765 -21011724 - L1ME4a LINE L1 -11 6110 5934 186 43 0 0 chr12 123270794 123270817 -21011672 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 756 165 0 0 chr12 123270820 123270935 -21011554 - FLAM_C SINE Alu -17 116 2 1607 168 0 70 chr12 123270939 123271255 -21011234 - AluJo SINE Alu -17 295 2 22 0 0 0 chr12 123271311 123271333 -21011156 + AT_rich Low_complexity Low_complexity 1 22 0 2487 82 0 0 chr12 123271824 123272127 -21010362 - AluY SINE Alu -8 303 1 1883 164 3 13 chr12 123272276 123272574 -21009915 + AluJb SINE Alu 1 295 -17 2374 91 0 0 chr12 123272819 123273105 -21009384 - AluSg SINE Alu -24 286 1 1041 131 0 0 chr12 123273105 123273250 -21009239 - AluSq/x SINE Alu -167 146 2 380 287 0 0 chr12 123273479 123273573 -21008916 + MIR SINE MIR 51 144 -64 2439 92 0 13 chr12 123273582 123273898 -21008591 + AluSx SINE Alu 1 312 0 347 86 52 0 chr12 123273950 123274008 -21008481 + GA-rich Low_complexity Low_complexity 4 64 0 763 165 0 23 chr12 123274009 123274142 -21008347 + FLAM_C SINE Alu 4 133 0 410 213 254 0 chr12 123274194 123274316 -21008173 - MIR SINE MIR -10 252 100 297 309 202 14 chr12 123274397 123274620 -21007869 + L2 LINE L2 2594 2858 -456 * 308 267 31 140 chr12 123274610 123274666 -21007823 + L2 LINE L2 2971 3032 -240 2295 116 7 0 chr12 123274666 123274969 -21007520 + AluSx SINE Alu 1 305 -7 308 267 31 140 chr12 123274969 123275204 -21007285 + L2 LINE L2 3032 3230 -42 182 268 0 36 chr12 123275206 123275262 -21007227 - MIR SINE MIR -139 69 16 287 278 100 0 chr12 123275347 123275437 -21007052 - MER117 DNA MER1_type -2 195 97 799 158 0 30 chr12 123275494 123275627 -21006862 + FLAM_A SINE Alu 1 129 -4 209 253 88 44 chr12 123275742 123275833 -21006656 - MIR SINE MIR -85 123 29 1150 205 14 0 chr12 123276020 123276235 -21006254 + AluJb SINE Alu 1 218 -94 26 64 0 0 chr12 123276247 123276294 -21006195 + AT_rich Low_complexity Low_complexity 1 47 0 2246 116 3 0 chr12 123276294 123276587 -21005902 + AluSx SINE Alu 1 294 -18 445 196 152 0 chr12 123276593 123276705 -21005784 - L1MD3 LINE L1 -137 7858 7730 222 184 0 0 chr12 123277502 123277540 -21004949 + (CACG)n Simple_repeat Simple_repeat 1 38 0 2369 93 0 0 chr12 123278500 123278800 -21003689 + AluSc SINE Alu 1 300 -9 2423 66 23 0 chr12 123278801 123279103 -21003386 + AluY SINE Alu 2 310 -1 207 0 0 0 chr12 123280254 123280277 -21002212 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1833 151 11 4 chr12 123280277 123280555 -21001934 - AluJo SINE Alu -26 286 7 793 122 22 72 chr12 123280579 123280718 -21001771 - FLAM_C SINE Alu -1 132 1 195 114 0 0 chr12 123280950 123280985 -21001504 + (TG)n Simple_repeat Simple_repeat 1 35 0 2063 122 0 16 chr12 123281229 123281540 -21000949 - AluSx SINE Alu 0 312 7 1838 125 11 4 chr12 123281758 123282059 -21000430 - AluSx SINE Alu 0 303 1 341 294 40 8 chr12 123282203 123282329 -21000160 + L1ME4a LINE L1 5992 6121 0 1671 142 18 14 chr12 123282394 123282695 -20999794 + AluSq SINE Alu 1 302 0 192 325 84 24 chr12 123282704 123282787 -20999702 - MIR SINE MIR -87 121 34 4307 160 11 40 chr12 123282838 123282968 -20999521 + L1MB3 LINE L1 5378 5510 -673 1633 177 0 10 chr12 123282968 123283262 -20999227 + AluJo SINE Alu 1 291 -21 4307 160 11 40 chr12 123283262 123283377 -20999112 + L1MB3 LINE L1 5510 5627 -556 3456 81 18 0 chr12 123283377 123283819 -20998670 - MLT2A2 LTR ERVL 0 453 4 4307 160 11 40 chr12 123283819 123284402 -20998087 + L1MB3 LINE L1 5627 6183 0 21 0 0 0 chr12 123284476 123284497 -20997992 + AT_rich Low_complexity Low_complexity 1 21 0 1829 154 3 0 chr12 123284563 123284862 -20997627 + AluSx SINE Alu 1 300 -12 802 223 0 0 chr12 123284988 123285154 -20997335 - FRAM SINE Alu -7 169 4 445 158 148 10 chr12 123285489 123285590 -20996899 - Charlie4 DNA MER1_type -22 1939 1825 1858 112 10 51 chr12 123285611 123285924 -20996565 + AluSx SINE Alu 1 300 -12 432 250 17 128 chr12 123286003 123286125 -20996364 - MIR SINE MIR -75 187 90 2256 131 5 32 chr12 123286125 123286499 -20995990 + THE1B LTR MaLR 1 364 0 432 250 17 128 chr12 123286499 123286556 -20995933 - MIR SINE MIR -172 90 28 252 167 0 0 chr12 123286608 123286656 -20995833 + (ATG)n Simple_repeat Simple_repeat 1 48 0 844 170 91 0 chr12 123286673 123286838 -20995651 - MIR SINE MIR -38 224 45 2170 111 0 0 chr12 123286878 123287176 -20995313 + AluSx SINE Alu 1 298 -14 262 289 44 35 chr12 123287199 123287313 -20995176 + L2 LINE L2 3154 3268 -45 1834 172 0 0 chr12 123287314 123287611 -20994878 + AluSx SINE Alu 13 309 -3 252 269 26 13 chr12 123287949 123288027 -20994462 - MIR3 SINE MIR -13 195 117 1012 55 30 18 chr12 123288606 123288771 -20993718 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 338 117 33 0 chr12 123288963 123289023 -20993466 + CT-rich Low_complexity Low_complexity 3 64 0 1483 177 0 19 chr12 123289024 123289284 -20993205 - AluJo SINE Alu -57 255 1 198 281 88 0 chr12 123289355 123289412 -20993077 - L2 LINE L2 0 3272 3211 2049 121 10 3 chr12 123289895 123290202 -20992287 - AluSx SINE Alu 0 312 4 579 199 6 13 chr12 123290210 123290366 -20992123 + CT-rich Low_complexity Low_complexity 4 158 0 1319 251 30 12 chr12 123290460 123290791 -20991698 - LTR16C LTR ERVL -2 489 153 1691 149 46 85 chr12 123290890 123291280 -20991209 - THE1C LTR MaLR 0 375 1 7507 130 38 11 chr12 123291280 123292403 -20990086 - THE1C-int LTR MaLR 0 1580 427 264 61 0 0 chr12 123292443 123292476 -20990013 - MER61C LTR ERV1 0 434 402 924 158 0 0 chr12 123292476 123292634 -20989855 + AluSg/x SINE Alu 155 312 0 899 157 98 49 chr12 123292636 123292955 -20989534 - MER61C LTR ERV1 -30 404 14 243 260 0 0 chr12 123292922 123292972 -20989517 - LTR28 LTR ERV1 -958 62 13 * 2225 98 10 3 chr12 123292973 123293280 -20989209 - THE1C-int LTR MaLR -1250 330 22 1671 120 73 92 chr12 123293280 123293654 -20988835 - THE1C LTR MaLR -9 419 1 451 307 28 17 chr12 123294207 123294386 -20988103 + MLT1K LTR MaLR 157 337 -251 219 139 0 0 chr12 123294485 123294521 -20987968 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 326 282 63 14 chr12 123294522 123294664 -20987825 + MLT1K LTR MaLR 413 561 -27 819 159 0 21 chr12 123294798 123294943 -20987546 - FLAM_C SINE Alu -1 142 1 1833 165 0 16 chr12 123294943 123295246 -20987243 - AluJb SINE Alu -14 298 1 1914 135 26 0 chr12 123295586 123295889 -20986600 - AluSx SINE Alu -1 311 1 304 313 121 6 chr12 123295904 123296086 -20986403 - MIR SINE MIR 0 262 60 303 219 34 39 chr12 123296141 123296259 -20986230 - L1MC5 LINE L1 -1 8041 7810 917 201 12 0 chr12 123296294 123296458 -20986031 - AluJo/FRAM SINE Alu 0 302 137 1145 141 51 0 chr12 123296460 123296637 -20985852 - AluSx SINE Alu -116 196 11 1466 153 80 4 chr12 123296653 123296928 -20985561 - AluJo SINE Alu -16 296 1 1033 206 12 4 chr12 123296928 123297176 -20985313 - L1 LINE L1 -1115 5031 4782 1990 145 0 0 chr12 123297188 123297499 -20984990 - AluSx SINE Alu -1 311 1 1698 227 6 0 chr12 123297503 123297860 -20984629 - L1ME1 LINE L1 -265 5901 5543 4922 79 12 0 chr12 123297861 123298504 -20983985 - L1PA8 LINE L1 0 6172 5522 508 257 111 39 chr12 123298564 123298871 -20983618 - L1MC5 LINE L1 -370 7591 7263 664 220 42 97 chr12 123298950 123299133 -20983356 - L1MC4 LINE L1 -730 7231 7094 856 213 0 0 chr12 123299133 123299297 -20983192 + FRAM SINE Alu 1 164 -2 664 220 42 97 chr12 123299297 123299455 -20983034 - L1MC4 LINE L1 -867 7094 6929 264 258 75 57 chr12 123299756 123299915 -20982574 - MLT1K LTR MaLR -60 528 367 860 302 68 31 chr12 123300151 123300343 -20982146 + LTR16C LTR ERVL 97 280 -211 3512 118 10 4 chr12 123300343 123300851 -20981638 - MER9 LTR ERVK 0 511 1 860 302 68 31 chr12 123300851 123301039 -20981450 + LTR16C LTR ERVL 280 491 0 272 223 36 18 chr12 123301477 123301589 -20980900 + (TA)n Simple_repeat Simple_repeat 2 115 0 23 33 0 0 chr12 123301613 123301643 -20980846 + AT_rich Low_complexity Low_complexity 1 30 0 1760 156 3 17 chr12 123301643 123301945 -20980544 - AluJb SINE Alu -14 298 1 1877 104 113 37 chr12 123302071 123302195 -20980294 - L1MB2 LINE L1 -2 6169 6056 2169 117 0 0 chr12 123302195 123302494 -20979995 + AluSx SINE Alu 1 299 -13 1877 104 113 37 chr12 123302494 123302696 -20979793 - L1MB2 LINE L1 -115 6056 5818 2002 118 28 0 chr12 123302696 123302985 -20979504 + AluSx SINE Alu 1 297 -15 1155 166 20 40 chr12 123303121 123303374 -20979115 + AluJo SINE Alu 50 297 -15 282 182 76 0 chr12 123303374 123303440 -20979049 + MLT1C LTR MaLR 38 108 -359 200 232 14 87 chr12 123303491 123303560 -20978929 + MIR3 SINE MIR 100 163 -45 1344 213 17 86 chr12 123303580 123303667 -20978822 + MLT1C LTR MaLR 88 179 -288 2001 118 0 44 chr12 123303667 123303842 -20978647 - AluSx SINE Alu -4 308 152 2387 76 0 0 chr12 123303842 123304143 -20978346 - AluSg SINE Alu -9 301 1 2001 118 0 44 chr12 123304143 123304288 -20978201 - AluSx SINE Alu -160 152 2 1344 213 17 86 chr12 123304288 123304608 -20977881 + MLT1C LTR MaLR 179 467 0 999 238 53 71 chr12 123305239 123305650 -20976839 - L1ME1 LINE L1 -86 6080 5677 1004 186 91 5 chr12 123305660 123305880 -20976609 + AluJo SINE Alu 11 249 -63 253 118 0 0 chr12 123305896 123305930 -20976559 - AluJ/FRAM SINE Alu -49 253 220 2329 74 0 0 chr12 123305948 123306244 -20976245 - AluY SINE Alu -15 296 1 180 0 0 0 chr12 123306262 123306282 -20976207 + (A)n Simple_repeat Simple_repeat 1 20 0 334 239 43 11 chr12 123306286 123306378 -20976111 - L1ME1 LINE L1 -483 5683 5589 1025 218 32 64 chr12 123306391 123306699 -20975790 + L1ME LINE L1 5011 5327 -837 1431 153 122 0 chr12 123306699 123306961 -20975528 + AluJb SINE Alu 1 294 -18 1025 218 32 64 chr12 123306961 123306972 -20975517 + L1ME LINE L1 5327 5337 -827 1215 156 19 134 chr12 123306972 123307326 -20975163 + AluJb SINE Alu 1 317 0 1540 120 139 0 chr12 123307329 123307595 -20974894 + AluSx SINE Alu 1 303 -9 1025 218 32 64 chr12 123307595 123307877 -20974612 + L1ME LINE L1 5339 5600 -564 217 196 22 0 chr12 123307909 123307955 -20974534 + L2 LINE L2 2734 2780 -534 27 49 0 0 chr12 123307962 123308003 -20974486 + AT_rich Low_complexity Low_complexity 1 41 0 278 307 242 23 chr12 123308008 123308405 -20974084 + L2 LINE L2 2830 3313 0 216 268 18 18 chr12 123308427 123308483 -20974006 - MIR SINE MIR -176 86 31 1569 173 19 19 chr12 123308493 123308805 -20973684 + AluJo SINE Alu 1 312 0 1878 144 0 3 chr12 123308847 123309165 -20973324 - AluSx SINE Alu 0 317 1 2227 66 7 0 chr12 123309167 123309456 -20973033 - AluY SINE Alu 0 311 21 21 0 0 0 chr12 123309459 123309480 -20973009 + AT_rich Low_complexity Low_complexity 1 21 0 290 234 138 11 chr12 123309493 123309587 -20972902 - MER46C DNA MER2_type -232 106 1 331 226 36 12 chr12 123310061 123310145 -20972344 - MIR3 SINE MIR -19 189 104 262 111 0 0 chr12 123310220 123310256 -20972233 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 726 145 17 28 chr12 123310257 123310436 -20972053 + CT-rich Low_complexity Low_complexity 3 179 0 1015 170 0 18 chr12 123310470 123310635 -20971854 - FRAM SINE Alu -3 163 2 691 279 74 8 chr12 123310693 123310937 -20971552 + MIR SINE MIR 2 261 -1 217 307 129 21 chr12 123311203 123311343 -20971146 + MIR SINE MIR 56 210 -52 2327 74 0 7 chr12 123311980 123312290 -20970199 + AluSp SINE Alu 1 308 -5 400 244 16 47 chr12 123312366 123312483 -20970006 - MIR SINE MIR -83 179 65 2081 68 0 0 chr12 123312483 123312747 -20969742 + AluY SINE Alu 44 307 -4 1012 141 0 6 chr12 123313030 123313186 -20969303 + AluSg/x SINE Alu 119 273 -37 2064 132 0 0 chr12 123313454 123313758 -20968731 - AluSg SINE Alu -6 304 1 1913 138 0 20 chr12 123314272 123314599 -20967890 - AluSq SINE Alu 0 313 1 1308 154 70 37 chr12 123314906 123315179 -20967310 + AluJo SINE Alu 1 282 -30 237 65 0 0 chr12 123315185 123315216 -20967273 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1656 149 14 69 chr12 123315216 123315566 -20966923 + L1MA10 LINE L1 5972 6302 -32 785 165 0 24 chr12 123315567 123315694 -20966795 + FLAM_C SINE Alu 4 127 -16 25 0 0 0 chr12 123315694 123315719 -20966770 + AT_rich Low_complexity Low_complexity 1 25 0 191 300 79 50 chr12 123315724 123315769 -20966720 + MIR SINE MIR 110 152 -110 1992 138 0 3 chr12 123315769 123316080 -20966409 + AluSx SINE Alu 1 310 -2 191 300 79 50 chr12 123316080 123316174 -20966315 + MIR SINE MIR 152 253 -9 2223 95 0 9 chr12 123316837 123317153 -20965336 - AluSp SINE Alu 0 313 1 211 27 27 27 chr12 123317153 123317190 -20965299 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1815 152 3 0 chr12 123317190 123317473 -20965016 - AluSq SINE Alu -29 284 1 1948 106 14 0 chr12 123317546 123317828 -20964661 - AluSx SINE Alu -17 295 10 1772 152 7 3 chr12 123317917 123318207 -20964282 + AluJb SINE Alu 11 301 -11 958 195 95 0 chr12 123318250 123318450 -20964039 + MER20 DNA MER1_type 1 219 0 471 155 0 0 chr12 123318674 123318758 -20963731 + (TG)n Simple_repeat Simple_repeat 2 85 0 666 219 67 81 chr12 123319178 123319388 -20963101 - MER20 DNA MER1_type -6 213 7 1691 118 15 8 chr12 123319540 123319803 -20962686 - AluSx SINE Alu -37 275 11 1833 130 7 3 chr12 123320186 123320478 -20962011 - AluSx SINE Alu -19 293 1 268 343 102 17 chr12 123320497 123320733 -20961756 - MIR SINE MIR -3 259 4 1068 296 59 24 chr12 123320759 123321168 -20961321 + MLT1K LTR MaLR 2 424 -164 201 154 26 0 chr12 123321296 123321335 -20961154 + L2 LINE L2 3215 3254 -18 1918 127 0 7 chr12 123321336 123321620 -20960869 + AluSx SINE Alu 1 282 -30 348 241 172 0 chr12 123321677 123321793 -20960696 + MIR3 SINE MIR 48 183 -25 430 266 25 67 chr12 123321857 123322069 -20960420 - L1MC5 LINE L1 -83 7878 7678 1654 148 0 24 chr12 123322069 123322388 -20960101 - AluSx SINE Alu 0 312 1 430 266 25 67 chr12 123322388 123322456 -20960033 - L1MC5 LINE L1 -283 7678 7609 234 0 0 0 chr12 123322457 123322483 -20960006 + (TA)n Simple_repeat Simple_repeat 1 26 0 1462 104 0 0 chr12 123322618 123322811 -20959678 - AluSx SINE Alu -117 195 3 802 110 0 8 chr12 123322880 123322998 -20959491 + FLAM_C SINE Alu 2 118 -25 23 78 0 0 chr12 123323009 123323060 -20959429 + AT_rich Low_complexity Low_complexity 1 51 0 843 128 0 0 chr12 123324013 123324130 -20958359 + FLAM_C SINE Alu 1 117 -16 29 0 0 0 chr12 123324145 123324174 -20958315 + AT_rich Low_complexity Low_complexity 1 29 0 288 309 25 0 chr12 123324353 123324434 -20958055 + MIR SINE MIR 67 149 -113 2959 104 9 20 chr12 123324492 123324942 -20957547 + MER65A LTR ERV1 1 445 0 251 233 0 70 chr12 123324988 123325074 -20957415 - L2 LINE L2 -369 2944 2865 1412 154 4 40 chr12 123325337 123325610 -20956879 - AluJo SINE Alu -9 303 41 448 264 122 30 chr12 123325860 123326057 -20956432 + MIR SINE MIR 48 262 0 1052 246 146 39 chr12 123326093 123326223 -20956266 - L2 LINE L2 -4 3309 3194 2108 132 0 0 chr12 123326223 123326534 -20955955 + AluSx SINE Alu 1 311 -1 1052 246 146 39 chr12 123326534 123326576 -20955913 - L2 LINE L2 -119 3194 3158 2099 111 3 13 chr12 123326576 123326891 -20955598 + AluSx SINE Alu 1 312 0 1052 246 146 39 chr12 123326891 123327127 -20955362 - L2 LINE L2 -155 3158 2856 1493 169 72 18 chr12 123327129 123327408 -20955081 + AluJb SINE Alu 4 297 -15 223 229 42 83 chr12 123327456 123327552 -20954937 - L2 LINE L2 -463 2851 2760 303 266 152 51 chr12 123327604 123327715 -20954774 - L1MC4 LINE L1 -1 8041 7906 2032 100 7 10 chr12 123327715 123328034 -20954455 - AluSq SINE Alu 0 318 1 303 266 152 51 chr12 123328034 123328078 -20954411 - L1MC4 LINE L1 -136 7906 7868 1038 262 111 18 chr12 123328224 123328613 -20953876 - L1ME2 LINE L1 -19 6145 5721 391 204 11 0 chr12 123328622 123328710 -20953779 - L1MA6 LINE L1 -1 6299 6211 185 290 29 14 chr12 123328718 123328787 -20953702 - L2 LINE L2 -603 2711 2642 1450 174 62 22 chr12 123328787 123329062 -20953427 + AluJo SINE Alu 1 286 -16 180 0 0 0 chr12 123329062 123329082 -20953407 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 826 214 29 29 chr12 123329605 123329811 -20952678 - AluJo SINE Alu -106 206 1 203 196 22 22 chr12 123329827 123329873 -20952616 + L2 LINE L2 2665 2710 -604 407 180 0 0 chr12 123329880 123329941 -20952548 - FRAM SINE Alu -37 129 69 239 234 31 47 chr12 123329943 123330007 -20952482 - MIR SINE MIR -196 66 4 1755 134 0 56 chr12 123330137 123330272 -20952217 + AluSx SINE Alu 1 142 -170 2303 65 14 0 chr12 123330272 123330563 -20951926 + AluSp SINE Alu 1 295 -18 1755 134 0 56 chr12 123330563 123330732 -20951757 + AluSx SINE Alu 142 288 -24 1124 138 0 18 chr12 123330565 123330733 -20951756 + AluSg/x SINE Alu 125 336 0 424 0 0 0 chr12 123330733 123330780 -20951709 + (TAAAA)n Simple_repeat Simple_repeat 4 120 0 351 219 124 38 chr12 123330828 123330857 -20951632 - MER81 DNA DNA 0 114 89 1722 179 17 7 chr12 123330857 123331168 -20951321 - AluJb SINE Alu -12 300 1 351 219 124 38 chr12 123331168 123331229 -20951260 - MER81 DNA DNA -25 89 1 624 188 17 26 chr12 123381578 123381695 -20900794 - MLT1E LTR MaLR -468 125 10 30 27 0 0 chr12 123381835 123381872 -20900617 + AT_rich Low_complexity Low_complexity 1 37 0 1834 100 0 0 chr12 123381944 123382174 -20900315 - AluSq SINE Alu -78 235 6 1745 193 87 5 chr12 123382178 123382556 -20899933 - L1MB5 LINE L1 -32 6142 5734 1884 164 3 0 chr12 123382559 123382876 -20899613 - AluSx SINE Alu 0 318 1 2074 127 0 13 chr12 123382879 123383187 -20899302 - AluSx SINE Alu -8 304 1 180 97 0 0 chr12 123383370 123383401 -20899088 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 659 253 104 56 chr12 123383402 123383671 -20898818 + MLT1I LTR MaLR 12 293 -116 231 103 0 0 chr12 123383879 123383918 -20898571 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 224 229 14 71 chr12 123383918 123383988 -20898501 - L2 LINE L2 -13 3300 3235 396 0 0 0 chr12 123384854 123384898 -20897591 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 187 430 0 8 chr12 123384919 123385047 -20897442 - MIR SINE MIR -111 151 25 195 184 0 0 chr12 123385708 123385746 -20896743 + (CA)n Simple_repeat Simple_repeat 2 39 0 2400 101 0 0 chr12 123386047 123386353 -20896136 + AluSx SINE Alu 1 306 -6 1014 183 6 11 chr12 123386383 123386558 -20895931 + AluJo SINE Alu 120 293 -19 1961 147 0 3 chr12 123386568 123386884 -20895605 + AluSg SINE Alu 1 315 0 302 219 0 71 chr12 123387197 123387296 -20895193 + AluJ/FRAM SINE Alu 227 302 0 252 80 40 40 chr12 123387312 123387362 -20895127 + L1MB4 LINE L1 6129 6178 -2 254 132 0 0 chr12 123387387 123387425 -20895064 + tRNA-Cys-TGC tRNA tRNA 37 74 -1 442 192 0 0 chr12 123387447 123387520 -20894969 - AluS SINE Alu -229 84 12 2432 97 0 0 chr12 123387638 123387949 -20894540 + AluY SINE Alu 1 311 0 1419 170 4 0 chr12 123388451 123388680 -20893809 + AluSx SINE Alu 1 230 -82 583 118 14 132 chr12 123388787 123388931 -20893558 - MLT1C LTR MaLR -340 127 1 2388 205 45 40 chr12 123389308 123389840 -20892649 + MLT1F LTR MaLR 7 541 -1 281 230 0 112 chr12 123389968 123390129 -20892360 + MIR SINE MIR 82 224 -38 1106 90 0 6 chr12 123390332 123390488 -20892001 + L1PA8 LINE L1 6018 6172 0 244 119 0 24 chr12 123392959 123393001 -20889488 - MER5A DNA MER1_type -83 106 66 642 193 0 0 chr12 123393141 123393260 -20889229 + FLAM_C SINE Alu 2 120 -23 770 239 6 11 chr12 123393832 123394012 -20888477 + MLT1B LTR MaLR 1 179 -211 815 152 0 8 chr12 123394012 123394137 -20888352 + FLAM_C SINE Alu 1 124 -19 1757 135 12 53 chr12 123394155 123394474 -20888015 + AluSx SINE Alu 1 306 -6 1703 195 34 0 chr12 123394966 123395263 -20887226 + AluJo SINE Alu 5 311 -1 422 255 0 0 chr12 123395295 123395389 -20887100 + MIR SINE MIR 59 152 -110 720 146 9 30 chr12 123395391 123395563 -20886926 - MSTD LTR MaLR 0 396 199 605 291 109 33 chr12 123395781 123396111 -20886378 - MLT1J LTR MaLR -153 358 4 211 273 200 18 chr12 123396135 123396245 -20886244 - L2 LINE L2 0 3313 3184 685 227 118 30 chr12 123396328 123396531 -20885958 - MER58A DNA MER1_type 0 224 4 597 204 0 9 chr12 123396704 123396812 -20885677 - AluJb SINE Alu -204 108 2 344 323 38 8 chr12 123396945 123397078 -20885411 + L2 LINE L2 3136 3272 0 216 286 0 0 chr12 123397109 123397165 -20885324 - MIR SINE MIR -130 132 77 370 279 37 37 chr12 123397700 123397861 -20884628 - L2 LINE L2 0 3313 3153 651 208 24 0 chr12 123398591 123398716 -20883773 - FLAM_C SINE Alu -5 128 1 426 228 35 18 chr12 123399090 123399204 -20883285 + FLAM_C SINE Alu 3 118 -15 232 125 0 0 chr12 123399543 123399583 -20882906 + L1MB5 LINE L1 6127 6166 -8 1447 159 11 22 chr12 123399985 123400262 -20882227 + AluSq SINE Alu 1 274 -39 1508 154 4 40 chr12 123400520 123400793 -20881696 - AluJo SINE Alu -9 303 41 285 276 124 46 chr12 123401018 123401235 -20881254 + MIR SINE MIR 29 262 0 270 190 13 25 chr12 123401413 123401492 -20880997 + GA-rich Low_complexity Low_complexity 1 78 0 553 322 80 7 chr12 123401492 123401781 -20880708 - L1ME4a LINE L1 -293 5828 5519 1153 202 15 11 chr12 123401831 123402103 -20880386 + AluSx SINE Alu 1 273 -39 356 171 0 29 chr12 123402312 123402382 -20880107 + AluSc SINE Alu 231 298 -1 1874 145 3 10 chr12 123402482 123402772 -20879717 + AluSx SINE Alu 1 288 -24 265 335 104 39 chr12 123403366 123403596 -20878893 - MIR SINE MIR -12 250 6 2023 149 3 0 chr12 123403816 123404111 -20878378 - AluJo SINE Alu -16 296 1 33 66 0 0 chr12 123404280 123404341 -20878148 + AT_rich Low_complexity Low_complexity 1 61 0 1856 146 34 10 chr12 123405077 123405371 -20877118 + AluJb SINE Alu 1 301 -11 1891 140 4 15 chr12 123405372 123405644 -20876845 + AluSx SINE Alu 1 269 -43 950 133 7 0 chr12 123405644 123405779 -20876710 - AluSq/x SINE Alu -176 136 1 336 238 198 0 chr12 123406004 123406105 -20876384 - L2 LINE L2 -4 3309 3189 221 368 63 0 chr12 123406146 123406241 -20876248 + L2 LINE L2 2874 2974 -298 931 193 136 41 chr12 123407072 123407315 -20875174 - AluJo SINE Alu -12 300 35 221 0 35 0 chr12 123407319 123407348 -20875141 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 243 303 0 0 chr12 123407510 123407576 -20874913 - Charlie8 DNA MER1_type -989 1428 1363 443 292 0 8 chr12 123407579 123407709 -20874780 - LTR33 LTR ERVL 0 521 393 1955 151 0 19 chr12 123407731 123408042 -20874447 + AluSx SINE Alu 2 306 -6 634 238 163 13 chr12 123408056 123408283 -20874206 - L2 LINE L2 -197 3116 2856 643 182 0 0 chr12 123408285 123408384 -20874105 + AluJ/FLAM SINE Alu 4 102 -210 288 213 93 0 chr12 123408830 123408905 -20873584 - Charlie8 DNA MER1_type -1942 475 394 204 239 0 192 chr12 123408909 123409076 -20873413 + MIR SINE MIR 112 246 -16 414 98 0 61 chr12 123409110 123409192 -20873297 - MADE1 DNA Mariner 0 80 4 2166 132 0 0 chr12 123409228 123409539 -20872950 - AluSx SINE Alu -1 311 1 1295 238 10 20 chr12 123409573 123409867 -20872622 - AluJb SINE Alu -17 295 5 665 171 0 0 chr12 123409907 123410012 -20872477 - FLAM_C SINE Alu -18 125 21 885 244 21 72 chr12 123410096 123410375 -20872114 - Charlie8 DNA MER1_type -2141 276 12 246 173 27 47 chr12 123411335 123411485 -20871004 + (TCTG)n Simple_repeat Simple_repeat 4 150 0 358 280 57 32 chr12 123411647 123411804 -20870685 - L2 LINE L2 0 3313 3153 726 154 23 46 chr12 123412558 123412688 -20869801 - FLAM_C SINE Alu -14 129 3 246 308 66 0 chr12 123412690 123412781 -20869708 - MIR SINE MIR -96 166 70 713 199 15 0 chr12 123413060 123413191 -20869298 + FLAM_C SINE Alu 1 133 0 220 280 224 56 chr12 123413475 123413600 -20868889 + L3 LINE CR1 1425 1570 -7 2110 125 0 3 chr12 123413687 123413975 -20868514 + AluSx SINE Alu 2 288 -24 732 261 19 9 chr12 123414124 123414339 -20868150 + MIR SINE MIR 46 262 0 2029 152 0 0 chr12 123415024 123415326 -20867163 - AluSx SINE Alu -10 302 1 759 137 8 23 chr12 123415909 123416040 -20866449 - AluJo SINE Alu -163 149 21 791 205 48 52 chr12 123416136 123416404 -20866085 - L1ME3A LINE L1 -3 6167 5901 1793 148 3 34 chr12 123416859 123417157 -20865332 - AluJb SINE Alu -23 289 1 1296 238 39 49 chr12 123417309 123417720 -20864769 - L1ME3A LINE L1 -266 5904 5498 1750 220 35 61 chr12 123417734 123418103 -20864386 + MER21B LTR ERV1 12 425 -438 2726 110 0 0 chr12 123418103 123418467 -20864022 - THE1B LTR MaLR 0 364 1 1750 220 35 61 chr12 123418467 123418669 -20863820 + MER21B LTR ERV1 425 631 -232 617 262 33 11 chr12 123418806 123418989 -20863500 + MER21B LTR ERV1 616 802 -61 371 338 103 63 chr12 123419225 123419460 -20863029 + L2 LINE L2 2827 3088 -184 789 262 94 0 chr12 123419460 123419662 -20862827 + MER58A DNA MER1_type 4 224 0 371 338 103 63 chr12 123419662 123419855 -20862634 + L2 LINE L2 3088 3272 0 645 301 98 44 chr12 123419879 123420287 -20862202 + MLT1J LTR MaLR 4 433 -78 198 241 52 35 chr12 123420695 123420753 -20861736 - L2 LINE L2 -1 3271 3213 226 153 34 0 chr12 123420820 123420879 -20861610 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 357 290 20 10 chr12 123420960 123421047 -20861442 + MER58B DNA MER1_type 1 91 -2329 210 37 0 0 chr12 123421047 123421074 -20861415 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 357 290 20 10 chr12 123421074 123421086 -20861403 + MER58B DNA MER1_type 91 101 -2319 2703 132 57 2 chr12 123421087 123421527 -20860962 - L1PA13 LINE L1 -25 6138 5675 1542 186 0 4 chr12 123421529 123421793 -20860696 + MER58B DNA MER1_type 77 339 -2 293 287 140 7 chr12 123423031 123423181 -20859308 - L1ME LINE L1 -393 5728 5559 821 130 0 0 chr12 123423204 123423327 -20859162 + L1PA16 LINE L1 6035 6157 -9 1611 147 72 20 chr12 123423428 123423721 -20858768 - AluSg SINE Alu 0 310 3 24 0 0 0 chr12 123423730 123423754 -20858735 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr12 123423780 123423804 -20858685 + AT_rich Low_complexity Low_complexity 1 24 0 2945 212 49 28 chr12 123423821 123424411 -20858078 - L1ME1 LINE L1 -23 6143 5534 2136 170 10 10 chr12 123424411 123424799 -20857690 - MLT1B LTR MaLR 0 390 3 2945 212 49 28 chr12 123424799 123424919 -20857570 - L1ME1 LINE L1 -632 5534 5418 847 267 36 54 chr12 123426199 123426533 -20855956 - MLT1G3 LTR MaLR -244 351 1 255 277 0 92 chr12 123426967 123427086 -20855403 - MIR SINE MIR -63 145 37 911 213 6 0 chr12 123427469 123427638 -20854851 - MER45A DNA AcHobo -8 170 1 2240 117 10 3 chr12 123427771 123428080 -20854409 + AluSx SINE Alu 1 311 -1 186 143 0 0 chr12 123428896 123428931 -20853558 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 324 299 75 22 chr12 123429083 123429271 -20853218 - MIR SINE MIR -40 222 27 304 247 13 13 chr12 123429328 123429405 -20853084 - L2 LINE L2 0 3313 3237 711 146 8 16 chr12 123429466 123429589 -20852900 - AluJ SINE Alu -14 298 177 * 727 149 0 0 chr12 123429582 123429689 -20852800 - AluJ SINE Alu -186 126 20 440 272 91 61 chr12 123430120 123430528 -20851961 + MLT1K LTR MaLR 169 588 0 5173 31 2 11 chr12 123430708 123431341 -20851148 + L1PA5 LINE L1 5535 6161 0 192 338 0 25 chr12 123431353 123431433 -20851056 + MIR SINE MIR 34 111 -97 2315 111 0 0 chr12 123431443 123431750 -20850739 - AluSx SINE Alu -5 307 1 409 362 61 56 chr12 123431929 123432341 -20850148 - L2 LINE L2 -52 3220 2807 360 347 16 0 chr12 123432505 123432626 -20849863 - MIR SINE MIR -56 152 30 1818 118 0 0 chr12 123433770 123434015 -20848474 - AluSx SINE Alu -5 307 63 356 148 0 0 chr12 123434058 123434112 -20848377 - AluSx SINE Alu -245 57 4 225 271 14 0 chr12 123434256 123434326 -20848163 + MIR SINE MIR 83 153 -55 794 258 36 13 chr12 123435032 123435257 -20847232 + MIR SINE MIR 8 237 -25 25 51 0 0 chr12 123435307 123435346 -20847143 + AT_rich Low_complexity Low_complexity 1 39 0 1521 105 56 183 chr12 123435508 123435919 -20846570 - Tigger2 DNA MER2_type 0 2718 2257 180 0 0 0 chr12 123435919 123435939 -20846550 + (GGA)n Simple_repeat Simple_repeat 2 21 0 1521 105 56 183 chr12 123435939 123436032 -20846457 - Tigger2 DNA MER2_type -461 2257 1 367 253 0 0 chr12 123436096 123436190 -20846299 - MIR SINE MIR -61 147 61 440 287 9 0 chr12 123436209 123436324 -20846165 - MER103 DNA DNA -45 121 6 1894 153 0 13 chr12 123436368 123436668 -20845821 + AluSx SINE Alu 1 296 -16 246 95 0 0 chr12 123436704 123436746 -20845743 + LTR66 LTR ERVL 398 439 -171 231 48 0 0 chr12 123436752 123436794 -20845695 + LTR66 LTR ERVL 398 439 -171 187 302 16 0 chr12 123436865 123436928 -20845561 - MER5A DNA MER1_type -3 186 123 757 154 8 0 chr12 123436928 123437045 -20845444 + FLAM_C SINE Alu 2 119 -24 21 0 0 0 chr12 123437091 123437112 -20845377 + AT_rich Low_complexity Low_complexity 1 21 0 243 260 0 26 chr12 123437124 123437201 -20845288 - MER5A DNA MER1_type -89 100 26 1231 72 0 0 chr12 123437392 123437545 -20844944 + AluY SINE Alu 148 300 -11 1904 153 0 23 chr12 123437708 123438016 -20844473 - AluJo SINE Alu -11 301 1 231 179 54 18 chr12 123438353 123438409 -20844080 + T-rich Low_complexity Low_complexity 3 60 0 2406 97 0 0 chr12 123438940 123439248 -20843241 - AluSx SINE Alu -4 308 1 236 309 41 41 chr12 123439369 123439492 -20842997 + MIR SINE MIR 23 145 -63 2002 136 0 3 chr12 123440216 123440534 -20841955 - AluSx SINE Alu 0 317 1 570 318 80 7 chr12 123440584 123440873 -20841616 + L1ME4a LINE L1 5519 5828 -293 285 179 21 32 chr12 123440874 123440969 -20841520 + CT-rich Low_complexity Low_complexity 4 97 0 717 179 6 17 chr12 123441000 123441179 -20841310 + CT-rich Low_complexity Low_complexity 2 178 0 310 270 68 59 chr12 123441266 123441488 -20841001 + L1ME4a LINE L1 5861 6084 -37 923 317 88 25 chr12 123441524 123442004 -20840485 + L2 LINE L2 2804 3313 0 340 308 17 45 chr12 123442255 123442443 -20840046 + MIR SINE MIR 16 199 -59 2254 102 13 0 chr12 123442512 123442816 -20839673 - AluSg SINE Alu -2 308 1 1727 145 48 28 chr12 123442889 123443179 -20839310 - AluJo SINE Alu -16 296 1 224 262 202 0 chr12 123443240 123443324 -20839165 - MIR SINE MIR -113 149 49 3660 157 60 96 chr12 123443747 123443785 -20838704 - L1MB5 LINE L1 0 6174 6136 276 30 0 0 chr12 123443785 123443818 -20838671 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1949 113 23 0 chr12 123443826 123444091 -20838398 - AluSx SINE Alu -36 276 6 3660 157 60 96 chr12 123444091 123444475 -20838014 - L1MB5 LINE L1 -45 6129 5733 1771 169 3 3 chr12 123444475 123444789 -20837700 - AluJb SINE Alu 0 314 1 3660 157 60 96 chr12 123444789 123445276 -20837213 - L1MB5 LINE L1 -441 5733 5287 390 42 0 0 chr12 123445391 123445439 -20837050 + (TC)n Simple_repeat Simple_repeat 1 48 0 943 191 0 0 chr12 123445440 123445592 -20836897 - FRAM SINE Alu -28 148 1 253 308 37 9 chr12 123446390 123446497 -20835992 + MIR SINE MIR 82 191 -71 22 0 0 0 chr12 123446548 123446570 -20835919 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr12 123446600 123446632 -20835857 + AT_rich Low_complexity Low_complexity 1 32 0 902 125 0 0 chr12 123446633 123446753 -20835736 - FLAM_C SINE Alu -21 122 3 258 222 28 98 chr12 123446765 123446913 -20835576 - MIR SINE MIR -66 142 13 1876 136 3 37 chr12 123447992 123448287 -20834202 - AluSx SINE Alu -16 296 12 1699 182 10 14 chr12 123448295 123448592 -20833897 - AluJo SINE Alu -16 296 1 215 289 87 19 chr12 123448664 123448768 -20833721 - MIR SINE MIR -75 187 77 663 271 164 15 chr12 123448815 123449144 -20833345 - MER113 DNA MER1_type? -2 519 142 654 13 0 0 chr12 123449150 123449225 -20833264 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 2312 114 16 0 chr12 123449242 123449549 -20832940 - AluSx SINE Alu 0 312 1 775 157 8 0 chr12 123449618 123449739 -20832750 - Tigger1 DNA MER2_type 0 2418 2297 452 100 0 0 chr12 123449784 123449844 -20832645 + L1PA12 LINE L1 5909 5968 -200 1240 164 9 14 chr12 123450143 123450362 -20832127 + MER20 DNA MER1_type 1 218 -1 2007 152 3 0 chr12 123450742 123451038 -20831451 - AluJb SINE Alu -14 298 2 346 301 45 15 chr12 123451171 123451304 -20831185 + L2 LINE L2 3136 3272 0 216 286 0 0 chr12 123451335 123451391 -20831098 - MIR SINE MIR -130 132 77 279 302 50 29 chr12 123451640 123451779 -20830710 + MIR SINE MIR 110 251 -11 405 0 0 0 chr12 123452554 123452599 -20829890 + (CA)n Simple_repeat Simple_repeat 2 46 0 297 0 0 0 chr12 123452686 123452719 -20829770 + (CA)n Simple_repeat Simple_repeat 1 33 0 503 268 93 8 chr12 123453257 123453612 -20828877 - L1ME4a LINE L1 -11 6110 5673 345 274 149 24 chr12 123453797 123453965 -20828524 - MIR SINE MIR -1 261 73 293 308 115 39 chr12 123454019 123454253 -20828236 - L2 LINE L2 -556 2758 2507 198 422 0 8 chr12 123454861 123454989 -20827500 + MIR SINE MIR 25 151 -111 423 0 0 0 chr12 123455011 123455058 -20827431 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 328 288 104 31 chr12 123455248 123455470 -20827019 - MIR SINE MIR -5 257 20 1922 116 0 93 chr12 123455865 123456209 -20826280 + AluSx SINE Alu 1 312 0 412 246 8 25 chr12 123456212 123456334 -20826155 + L2 LINE L2 3192 3311 -2 301 333 23 0 chr12 123456342 123456471 -20826018 + MIR SINE MIR 131 262 0 235 325 33 25 chr12 123458967 123459087 -20823402 - L2 LINE L2 -4 3268 3148 291 269 0 82 chr12 123459600 123459723 -20822766 - MIR SINE MIR -75 133 20 1439 264 129 19 chr12 123460277 123460742 -20821747 + MLT1G1 LTR MaLR 80 595 0 840 267 42 0 chr12 123461005 123461245 -20821244 - MIR SINE MIR -12 250 1 416 284 54 27 chr12 123461390 123461538 -20820951 - MIR SINE MIR -35 227 76 21 0 0 0 chr12 123462548 123462569 -20819920 + AT_rich Low_complexity Low_complexity 1 21 0 873 225 41 5 chr12 123462871 123463089 -20819400 + MIR SINE MIR 37 262 0 1298 25 0 13 chr12 123464278 123464436 -20818053 - L1PA8 LINE L1 0 6172 6017 481 227 138 36 chr12 123464788 123465035 -20817454 + L2 LINE L2 2900 3171 -142 254 233 0 17 chr12 123465652 123465712 -20816777 + CT-rich Low_complexity Low_complexity 3 61 0 255 218 0 0 chr12 123465854 123465955 -20816534 + (TG)n Simple_repeat Simple_repeat 1 101 0 360 309 6 17 chr12 123465980 123466158 -20816331 + (TG)n Simple_repeat Simple_repeat 1 176 0 279 254 0 0 chr12 123466212 123466334 -20816155 + (TG)n Simple_repeat Simple_repeat 2 123 0 287 309 6 22 chr12 123466348 123466529 -20815960 + (TG)n Simple_repeat Simple_repeat 1 178 0 430 242 0 38 chr12 123466613 123466978 -20815511 + (TG)n Simple_repeat Simple_repeat 1 351 0 180 253 154 11 chr12 123467998 123468089 -20814400 + MIR SINE MIR 123 226 -36 2631 144 19 7 chr12 123468691 123469121 -20813368 - L1MC3 LINE L1 0 7785 7351 251 263 18 0 chr12 123469129 123469186 -20813303 - L2 LINE L2 -82 3190 3133 222 298 0 0 chr12 123469774 123469831 -20812658 + MIR SINE MIR 97 153 -109 2044 132 24 34 chr12 123469931 123470309 -20812180 + THE1C LTR MaLR 1 374 -1 357 215 11 11 chr12 123470311 123470404 -20812085 + L2 LINE L2 3180 3272 0 272 232 10 0 chr12 123470423 123470522 -20811967 + (TGGA)n Simple_repeat Simple_repeat 3 102 0 430 270 29 22 chr12 123471397 123471534 -20810955 + MIR SINE MIR 79 216 -46 195 360 100 0 chr12 123471763 123471913 -20810576 + L2 LINE L2 2593 2757 -557 291 177 24 40 chr12 123471999 123472123 -20810366 + CT-rich Low_complexity Low_complexity 5 126 0 222 37 0 0 chr12 123472572 123472599 -20809890 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2148 97 14 0 chr12 123472602 123472880 -20809609 - AluSx SINE Alu -30 282 1 250 289 94 39 chr12 123472886 123473014 -20809475 + L2 LINE L2 3178 3312 -1 186 279 162 0 chr12 123473436 123473504 -20808985 + MIR SINE MIR 54 132 -76 980 242 26 0 chr12 123473521 123473715 -20808774 + MER58A DNA MER1_type 26 224 0 397 314 19 0 chr12 123473820 123473979 -20808510 - MER113 DNA MER1_type? -18 503 342 282 242 15 0 chr12 123474068 123474134 -20808355 + MER46C DNA MER2_type 3 69 -269 5365 136 37 48 chr12 123474199 123474360 -20808129 + L1MA6 LINE L1 5137 5298 -1002 194 62 31 0 chr12 123474360 123474392 -20808097 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5365 136 37 48 chr12 123474392 123474443 -20808046 + L1MA6 LINE L1 5298 5348 -952 1706 68 0 0 chr12 123474443 123474649 -20807840 + L1PA5 LINE L1 5932 6151 -3 5365 136 37 48 chr12 123474649 123475565 -20806924 + L1MA6 LINE L1 5348 6283 -17 497 185 22 0 chr12 123475701 123475793 -20806696 + MER46C DNA MER2_type 243 336 -2 269 225 42 58 chr12 123475832 123475952 -20806537 - MER113 DNA MER1_type? -398 123 6 291 280 37 19 chr12 123477035 123477142 -20805347 + MIR SINE MIR 36 144 -64 198 196 0 22 chr12 123477156 123477202 -20805287 - MIR SINE MIR -20 242 198 748 169 0 42 chr12 123477224 123477366 -20805123 - FLAM_C SINE Alu -7 136 1 238 329 0 0 chr12 123477416 123477495 -20804994 - MIR SINE MIR -25 237 159 656 301 58 32 chr12 123477497 123477809 -20804680 - LTR16C LTR ERVL -3 488 169 214 330 0 62 chr12 123477967 123478079 -20804410 - MIR SINE MIR -132 130 26 214 362 74 0 chr12 123478104 123478218 -20804271 - MIR SINE MIR -64 144 52 265 294 21 56 chr12 123479126 123479269 -20803220 + MIR3 SINE MIR 45 182 -26 1557 182 34 89 chr12 123479279 123479773 -20802716 - MLT1C LTR MaLR 0 467 1 2383 204 43 39 chr12 123480145 123480684 -20801805 + MLT1F LTR MaLR 1 541 -1 203 250 0 0 chr12 123480704 123480752 -20801737 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 543 256 6 36 chr12 123480794 123480962 -20801527 + MIR SINE MIR 66 228 -34 368 283 134 32 chr12 123481396 123481583 -20800906 + MIR SINE MIR 57 262 0 250 182 0 0 chr12 123483082 123483126 -20799363 + MER5A DNA MER1_type 9 52 -137 382 310 0 0 chr12 123483793 123483948 -20798541 + G-rich Low_complexity Low_complexity 1 155 0 30 51 0 0 chr12 123483948 123483987 -20798502 + GC_rich Low_complexity Low_complexity 1 39 0 571 227 0 0 chr12 123483987 123484128 -20798361 + G-rich Low_complexity Low_complexity 1 141 0 201 338 0 0 chr12 123484438 123484509 -20797980 - L2 LINE L2 0 3313 3243 642 266 71 0 chr12 123484514 123484698 -20797791 - LTR33A LTR ERVL 0 523 327 400 266 91 42 chr12 123484815 123484958 -20797531 - LTR33A LTR ERVL -371 152 3 645 303 48 24 chr12 123485291 123485542 -20796947 - MIR SINE MIR -4 258 2 675 295 123 33 chr12 123485699 123486058 -20796431 - MLT1J LTR MaLR -116 395 5 2253 105 0 0 chr12 123486553 123486849 -20795640 - AluY SINE Alu -15 296 1 313 307 67 7 chr12 123487893 123488043 -20794446 - MIR SINE MIR -10 252 94 1206 163 5 5 chr12 123488103 123488312 -20794177 - L1MB1 LINE L1 0 6168 5960 642 127 15 75 chr12 123488316 123488450 -20794039 - MSTB LTR MaLR -300 126 1 217 269 0 0 chr12 123488519 123488571 -20793918 + MIR SINE MIR 48 99 -163 191 222 0 0 chr12 123488808 123488844 -20793645 + L2 LINE L2 3181 3216 -97 1569 225 91 56 chr12 123488873 123489424 -20793065 + MLT1F1 LTR MaLR 1 567 0 293 275 167 0 chr12 123489521 123489659 -20792830 - MIR SINE MIR -2 260 100 365 329 20 34 chr12 123489745 123489891 -20792598 - MIR3 SINE MIR -49 159 16 227 281 0 0 chr12 123490476 123490533 -20791956 + L2 LINE L2 3184 3240 -32 2339 194 42 40 chr12 123490874 123491421 -20791068 - L1MA10 LINE L1 -2 6332 5785 204 217 0 0 chr12 123491430 123491476 -20791013 + (TA)n Simple_repeat Simple_repeat 1 46 0 1927 149 17 0 chr12 123491502 123491791 -20790698 + AluSx SINE Alu 1 294 -18 479 189 27 0 chr12 123491799 123491910 -20790579 + L1MA8 LINE L1 6158 6271 -20 1808 164 13 0 chr12 123491910 123492214 -20790275 - L1MA10 LINE L1 -507 5784 5477 751 162 54 14 chr12 123492214 123492362 -20790127 - MSTB LTR MaLR -48 378 225 4653 156 18 27 chr12 123492794 123493003 -20789486 - L1MA10 LINE L1 -698 5470 5261 2495 73 0 6 chr12 123493003 123493316 -20789173 + AluY SINE Alu 1 311 0 4653 156 18 27 chr12 123493316 123494185 -20788304 - L1MA10 LINE L1 -907 5261 4450 2235 112 0 0 chr12 123494290 123494577 -20787912 + AluSx SINE Alu 6 292 -20 285 263 34 42 chr12 123494726 123494844 -20787645 - MLT1K LTR MaLR -2 586 470 201 292 0 0 chr12 123494870 123494935 -20787554 + CT-rich Low_complexity Low_complexity 1 65 0 2502 85 0 0 chr12 123495212 123495519 -20786970 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr12 123495858 123495883 -20786606 + AT_rich Low_complexity Low_complexity 1 25 0 478 57 0 0 chr12 123496979 123497049 -20785440 + Alu SINE Alu 243 312 0 237 342 35 40 chr12 123497665 123497864 -20784625 - MIR SINE MIR -13 249 52 253 289 0 0 chr12 123497946 123498022 -20784467 - MIR SINE MIR -135 127 52 1069 184 51 42 chr12 123498301 123498518 -20783971 - MER20 DNA MER1_type 0 219 1 401 165 0 4 chr12 123500120 123500254 -20782235 - MER53 DNA DNA -3 186 5 684 286 0 0 chr12 123500952 123501130 -20781359 + MER5B DNA MER1_type 1 178 0 1887 120 34 80 chr12 123502176 123502502 -20779987 - AluSx SINE Alu -1 311 1 228 203 34 0 chr12 123502505 123502564 -20779925 - MER116 DNA Mariner -19 61 1 2454 196 77 12 chr12 123502614 123503120 -20779369 - MLT1F LTR MaLR 0 542 4 428 329 91 0 chr12 123503567 123503786 -20778703 - MIR SINE MIR -13 249 11 2329 173 34 10 chr12 123503836 123504252 -20778237 - MSTB LTR MaLR 0 426 1 1070 273 15 0 chr12 123504314 123504578 -20777911 - LTR16A LTR ERVL -2 448 181 231 317 25 8 chr12 123505044 123505164 -20777325 + (CA)n Simple_repeat Simple_repeat 2 123 0 188 35 35 0 chr12 123505493 123505522 -20776967 + (CA)n Simple_repeat Simple_repeat 2 31 0 33 0 0 0 chr12 123508012 123508045 -20774444 + AT_rich Low_complexity Low_complexity 1 33 0 213 39 0 0 chr12 123508326 123508352 -20774137 + (TTA)n Simple_repeat Simple_repeat 1 26 0 321 231 106 0 chr12 123508504 123508608 -20773881 - MIR SINE MIR -61 147 33 2165 131 0 0 chr12 123508842 123509148 -20773341 + AluSx SINE Alu 1 306 -6 201 169 23 54 chr12 123509198 123509328 -20773161 + (TG)n Simple_repeat Simple_repeat 2 127 0 275 282 49 12 chr12 123509386 123509549 -20772940 + (TATATG)n Simple_repeat Simple_repeat 3 171 0 261 189 33 0 chr12 123509549 123509639 -20772850 + (TG)n Simple_repeat Simple_repeat 2 94 0 380 208 21 35 chr12 123509653 123509797 -20772692 + (TG)n Simple_repeat Simple_repeat 1 142 0 1618 80 0 0 chr12 123509884 123510084 -20772405 + AluSg1 SINE Alu 1 200 -109 279 416 40 0 chr12 123511112 123511237 -20771252 - L2 LINE L2 -7 3265 3136 339 25 0 0 chr12 123511606 123511646 -20770843 + (TG)n Simple_repeat Simple_repeat 2 41 0 213 39 0 0 chr12 123512627 123512653 -20769836 + (ATG)n Simple_repeat Simple_repeat 3 28 0 658 182 55 0 chr12 123512654 123512764 -20769725 - FLAM_A SINE Alu -16 117 2 1973 196 6 6 chr12 123512886 123513239 -20769250 + MLT1A1 LTR MaLR 1 353 -12 377 293 46 111 chr12 123513420 123513771 -20768718 + L2 LINE L2 2939 3266 -6 180 213 21 0 chr12 123514745 123514792 -20767697 + L2 LINE L2 3265 3312 -1 220 214 0 0 chr12 123515047 123515089 -20767400 + (CTATA)n Simple_repeat Simple_repeat 4 45 0 1915 139 56 0 chr12 123515099 123515386 -20767103 - AluSx SINE Alu -5 307 5 232 244 49 37 chr12 123516037 123516119 -20766370 + MIR SINE MIR 104 186 -76 27 49 0 0 chr12 123516250 123516291 -20766198 + AT_rich Low_complexity Low_complexity 1 41 0 1855 162 0 25 chr12 123516291 123516605 -20765884 - AluJb SINE Alu -3 309 4 758 124 0 47 chr12 123516609 123516738 -20765751 - FLAM_C SINE Alu -10 133 11 195 294 109 25 chr12 123516763 123516882 -20765607 + MIR SINE MIR 94 222 -40 1756 157 71 0 chr12 123517486 123517766 -20764723 + AluJo SINE Alu 1 300 -12 248 313 126 20 chr12 123517992 123518238 -20764251 - L2 LINE L2 -340 2974 2703 472 242 38 25 chr12 123518262 123518419 -20764070 - LTR16C LTR ERVL -28 463 305 355 116 0 0 chr12 123518444 123518500 -20763989 + MLT2D LTR ERVL 366 414 0 592 184 61 18 chr12 123518889 123519052 -20763437 - L1ME4a LINE L1 0 6121 5952 25 83 0 0 chr12 123519052 123519112 -20763377 + AT_rich Low_complexity Low_complexity 1 60 0 751 149 15 22 chr12 123519232 123519366 -20763123 - FLAM_C SINE Alu 0 133 1 1209 195 133 24 chr12 123519431 123519770 -20762719 - L1MC4a LINE L1 -1878 5930 5555 315 122 0 0 chr12 123519793 123519834 -20762655 + Alu SINE Alu 1 41 -267 1487 239 86 50 chr12 123519903 123520322 -20762167 + MLT1K LTR MaLR 151 584 -4 493 156 0 0 chr12 123520509 123520615 -20761874 - AluSg/x SINE Alu 0 311 206 443 211 55 28 chr12 123520615 123520724 -20761765 - MIR SINE MIR -119 143 32 213 39 0 0 chr12 123521386 123521412 -20761077 + (A)n Simple_repeat Simple_repeat 1 26 0 319 280 133 14 chr12 123521762 123521869 -20760620 + MIR3 SINE MIR 37 160 -48 312 276 38 87 chr12 123521869 123522054 -20760435 + MER5B DNA MER1_type 1 176 -2 537 269 81 20 chr12 123522505 123522702 -20759787 - MIR SINE MIR -10 252 44 306 255 43 21 chr12 123523298 123523392 -20759097 + MIR3 SINE MIR 113 208 0 205 182 52 91 chr12 123523388 123523465 -20759024 - L2 LINE L2 0 3272 3199 * 374 335 12 12 chr12 123523637 123523804 -20758685 + MER5A DNA MER1_type 7 173 -16 230 271 0 0 chr12 123523953 123524012 -20758477 + (TA)n Simple_repeat Simple_repeat 1 59 0 421 282 0 9 chr12 123524077 123524187 -20758302 - MIR SINE MIR -128 134 26 1930 263 87 15 chr12 123524548 123524720 -20757769 - MLT1H1 LTR MaLR 0 555 397 1155 227 18 0 chr12 123524720 123524940 -20757549 + MER58A DNA MER1_type 1 224 0 1930 263 87 15 chr12 123524940 123525285 -20757204 - MLT1H1 LTR MaLR -158 397 1 398 263 36 29 chr12 123525398 123525535 -20756954 - L2 LINE L2 -3 3310 3173 4946 189 40 18 chr12 123526499 123527703 -20754786 - L1MA10 LINE L1 -3 6331 5104 207 269 115 0 chr12 123527832 123527910 -20754579 + MIR SINE MIR 110 196 -66 484 271 20 20 chr12 123527940 123528091 -20754398 - MIR SINE MIR -92 170 20 180 0 0 0 chr12 123528271 123528291 -20754198 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2362 88 7 7 chr12 123529046 123529351 -20753138 + AluSx SINE Alu 3 307 -5 504 218 111 34 chr12 123529425 123529603 -20752886 + MIR SINE MIR 33 224 -38 332 319 80 12 chr12 123530796 123530959 -20751530 - MLT1J LTR MaLR -238 273 100 2441 68 0 0 chr12 123531000 123531292 -20751197 + AluY SINE Alu 1 292 -19 1821 173 3 6 chr12 123531623 123531936 -20750553 + AluJo SINE Alu 1 312 0 198 103 0 0 chr12 123531947 123531976 -20750513 + (TAA)n Simple_repeat Simple_repeat 1 29 0 462 286 99 0 chr12 123531985 123532167 -20750322 - MIR SINE MIR -13 249 50 427 298 152 36 chr12 123532901 123533237 -20749252 + MLT1J2 LTR MaLR 63 440 -9 2135 105 34 3 chr12 123533370 123533665 -20748824 + AluSc SINE Alu 1 304 -5 739 154 8 0 chr12 123533678 123533795 -20748694 + L1ME LINE L1 5473 5590 -576 874 237 30 20 chr12 123533795 123533993 -20748496 - MLT1E LTR MaLR -384 209 10 30 27 0 0 chr12 123534133 123534170 -20748319 + AT_rich Low_complexity Low_complexity 1 37 0 1905 89 0 0 chr12 123534242 123534477 -20748012 - AluSq SINE Alu -78 235 1 180 97 0 0 chr12 123534659 123534690 -20747799 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 1031 274 50 50 chr12 123534691 123535089 -20747400 + MLT1I LTR MaLR 12 409 0 496 0 0 0 chr12 123535312 123535367 -20747122 + (TTTA)n Simple_repeat Simple_repeat 3 124 0 2099 113 0 0 chr12 123535367 123535649 -20746840 - AluSx SINE Alu -1 336 1 2550 58 0 16 chr12 123537089 123537400 -20745089 - AluY SINE Alu -5 306 1 2906 186 54 8 chr12 123538100 123538697 -20743792 + L1MB8 LINE L1 5554 6177 -1 2009 170 0 0 chr12 123539174 123539486 -20743003 - AluSx SINE Alu 0 312 1 326 319 28 14 chr12 123539541 123539685 -20742804 + L2 LINE L2 3168 3313 0 292 182 0 0 chr12 123540049 123540104 -20742385 - Charlie5 DNA MER1_type -27 2585 2531 1249 172 0 15 chr12 123540104 123540308 -20742181 + AluJb SINE Alu 84 284 -28 282 29 0 0 chr12 123540312 123540347 -20742142 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 962 219 50 0 chr12 123540347 123540607 -20741882 - Charlie5 DNA MER1_type -38 2574 2302 444 236 47 16 chr12 123541289 123541416 -20741073 + LTR33 LTR ERVL 9 139 -382 457 184 0 132 chr12 123541587 123541723 -20740766 - MER103 DNA DNA -45 121 4 190 359 0 13 chr12 123541858 123541936 -20740553 - MIR SINE MIR -140 122 46 258 326 12 12 chr12 123543114 123543200 -20739289 - L2 LINE L2 0 3313 3228 382 281 18 26 chr12 123543274 123543388 -20739101 - MIR3 SINE MIR -21 187 75 429 289 14 97 chr12 123543611 123543856 -20738633 + MIR SINE MIR 19 241 -21 407 292 9 0 chr12 123544548 123544661 -20737828 + L2 LINE L2 3150 3263 -9 3395 106 29 12 chr12 123544698 123545188 -20737301 - L1PA16 LINE L1 -9 6157 5660 3879 120 79 26 chr12 123545369 123545408 -20737081 + L1MA5A LINE L1 5555 5591 -706 2214 125 36 25 chr12 123545408 123545768 -20736721 - THE1B LTR MaLR 0 364 1 3879 120 79 26 chr12 123545768 123546412 -20736077 + L1MA5A LINE L1 5591 6274 -23 2099 132 3 6 chr12 123546567 123546878 -20735611 - AluSx SINE Alu -2 310 1 564 314 100 49 chr12 123546935 123547387 -20735102 - L2 LINE L2 0 3313 2839 21 57 0 0 chr12 123549039 123549074 -20733415 + AT_rich Low_complexity Low_complexity 1 35 0 1886 167 28 0 chr12 123549433 123549721 -20732768 + AluSx SINE Alu 1 296 -16 553 223 137 24 chr12 123549797 123550153 -20732336 - MLT1J LTR MaLR -55 456 27 298 315 86 43 chr12 123550191 123550353 -20732136 + MIR SINE MIR 16 184 -78 226 357 56 8 chr12 123550514 123550640 -20731849 + L2 LINE L2 3182 3313 0 515 289 64 28 chr12 123550699 123550917 -20731572 - MIR SINE MIR -29 233 8 338 213 11 0 chr12 123551061 123551155 -20731334 + CT-rich Low_complexity Low_complexity 3 97 0 200 281 49 49 chr12 123551320 123551402 -20731087 - MIR3 SINE MIR -36 172 91 2267 112 3 16 chr12 123551428 123551741 -20730748 + AluSx SINE Alu 3 311 -1 539 271 57 52 chr12 123552541 123552751 -20729738 - Charlie8 DNA MER1_type -2153 264 54 240 246 0 16 chr12 123553112 123553173 -20729316 - MLT1L LTR MaLR -2 613 554 422 236 29 11 chr12 123553199 123553373 -20729116 + CT-rich Low_complexity Low_complexity 3 179 0 229 261 0 0 chr12 123553374 123553420 -20729069 + polypyrimidine Low_complexity Low_complexity 3 48 0 527 187 7 32 chr12 123553421 123553715 -20728774 + CT-rich Low_complexity Low_complexity 1 286 0 221 253 11 0 chr12 123553747 123553834 -20728655 + CT-rich Low_complexity Low_complexity 2 89 0 1195 106 0 0 chr12 123554958 123555130 -20727359 - AluY SINE Alu 0 304 133 2298 79 35 0 chr12 123555130 123555420 -20727069 - AluY SINE Alu -11 300 1 2567 87 20 6 chr12 123555442 123555797 -20726692 - L1PA13 LINE L1 -19 6144 5785 253 191 0 0 chr12 123555797 123555839 -20726650 - MER113 DNA MER1_type? -211 310 269 668 305 66 28 chr12 123555925 123556319 -20726170 - MLT1I LTR MaLR 0 409 1 762 262 22 18 chr12 123556431 123556656 -20725833 + MIR SINE MIR 33 258 -4 2058 167 50 34 chr12 123556727 123557271 -20725218 - MLT2A2 LTR ERVL 0 554 1 233 289 13 0 chr12 123558286 123558362 -20724127 - MIR SINE MIR -18 244 168 210 231 167 0 chr12 123558611 123558689 -20723800 - MIR SINE MIR -115 147 57 2374 189 45 142 chr12 123558712 123559121 -20723368 - L1MC4 LINE L1 -6 8036 7752 1640 184 0 31 chr12 123559121 123559441 -20723048 + AluJo SINE Alu 3 312 0 2374 189 45 142 chr12 123559441 123559892 -20722597 - L1MC4 LINE L1 -290 7752 7259 834 247 0 0 chr12 123560118 123560308 -20722181 + L1PB4 LINE L1 5965 6154 -2 2077 139 0 19 chr12 123561612 123561922 -20720567 + AluSx SINE Alu 1 304 -8 284 247 14 0 chr12 123562451 123562524 -20719965 - LTR67 LTR ERVL 0 557 484 2252 211 12 50 chr12 123562888 123562979 -20719510 + MLT1F LTR MaLR 1 94 -448 288 77 0 0 chr12 123562979 123563018 -20719471 + (CA)n Simple_repeat Simple_repeat 2 40 0 2252 211 12 50 chr12 123563018 123563489 -20719000 + MLT1F LTR MaLR 94 542 0 883 244 56 0 chr12 123563686 123563899 -20718590 + LTR16A1 LTR ERVL 218 442 -15 853 183 26 21 chr12 123563928 123564229 -20718260 - MLT1A1 LTR MaLR -15 350 11 458 302 27 62 chr12 123564710 123564968 -20717521 - ERVL LTR ERVL -500 5264 5016 324 231 11 22 chr12 123565329 123565420 -20717069 - L2 LINE L2 0 3313 3224 263 227 45 0 chr12 123565453 123565519 -20716970 + MIR SINE MIR 95 163 -99 332 333 7 13 chr12 123565612 123565762 -20716727 - L2 LINE L2 0 3313 3165 260 259 0 0 chr12 123566300 123566358 -20716131 + L2 LINE L2 3252 3309 -4 468 123 0 0 chr12 123567597 123567670 -20714819 + (GA)n Simple_repeat Simple_repeat 2 74 0 1722 131 142 0 chr12 123567691 123567959 -20714530 + AluSx SINE Alu 1 306 -6 1867 146 17 3 chr12 123568109 123568397 -20714092 - AluSx SINE Alu -20 292 1 220 229 29 14 chr12 123571209 123571279 -20711210 + GA-rich Low_complexity Low_complexity 1 71 0 395 270 146 0 chr12 123571473 123571610 -20710879 + MIR SINE MIR 92 248 -14 1215 253 106 23 chr12 123572596 123572992 -20709497 + LTR16A LTR ERVL 16 444 -6 358 336 40 74 chr12 123573070 123573368 -20709121 - L2 LINE L2 -18 3254 2967 1200 257 58 63 chr12 123573528 123574007 -20708482 + MLT1H LTR MaLR 73 549 0 519 254 57 38 chr12 123574049 123574258 -20708231 - MIR SINE MIR -2 260 48 1863 121 68 0 chr12 123574303 123574583 -20707906 - AluSx SINE Alu 0 312 14 283 282 49 42 chr12 123574792 123574934 -20707555 + MIR3 SINE MIR 5 147 -61 955 266 141 19 chr12 123575465 123575833 -20706656 - LTR16A LTR ERVL -1 449 37 219 139 0 0 chr12 123576353 123576389 -20706100 + (CACCAT)n Simple_repeat Simple_repeat 3 38 0 431 238 41 54 chr12 123576406 123576553 -20705936 - MIR SINE MIR -47 215 71 289 249 89 29 chr12 123578077 123578307 -20704182 - L1M4 LINE L1 -3785 2361 2112 4670 139 16 32 chr12 123578338 123579151 -20703338 - L1MC1 LINE L1 0 6333 5534 211 264 19 0 chr12 123579166 123579219 -20703270 + CT-rich Low_complexity Low_complexity 2 55 0 234 281 47 41 chr12 123579925 123580096 -20702393 + (TCTCTG)n Simple_repeat Simple_repeat 2 173 0 206 272 22 49 chr12 123580193 123580377 -20702112 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 1294 235 68 42 chr12 123581529 123581984 -20700505 - MLT1C LTR MaLR 0 467 1 706 280 100 29 chr12 123582079 123582458 -20700031 - MER113 DNA MER1_type? -115 406 1 187 186 9 127 chr12 123582682 123582768 -20699721 - MIR SINE MIR -107 155 86 345 305 80 1 chr12 123582839 123583004 -20699485 - MIR SINE MIR -58 204 29 432 0 0 0 chr12 123583046 123583094 -20699395 + (CA)n Simple_repeat Simple_repeat 1 48 0 189 284 40 0 chr12 123583712 123583786 -20698703 - MIR SINE MIR -58 150 74 651 297 59 0 chr12 123583943 123584162 -20698327 + MIR SINE MIR 28 259 -3 211 240 20 0 chr12 123585095 123585145 -20697344 + CT-rich Low_complexity Low_complexity 1 51 0 232 266 57 40 chr12 123585196 123585320 -20697169 - MIR SINE MIR -117 145 20 1024 188 10 25 chr12 123585529 123585726 -20696763 - MLT1A1 LTR MaLR -171 194 1 901 294 15 72 chr12 123585805 123586218 -20696271 - LTR16B LTR ERVL -9 441 1 228 311 34 126 chr12 123586228 123586311 -20696178 - L2 LINE L2 -31 3241 3171 2430 73 0 3 chr12 123586311 123586611 -20695878 + AluSc SINE Alu 1 299 -10 228 311 34 126 chr12 123586611 123586646 -20695843 - L2 LINE L2 -101 3171 3134 2389 199 118 9 chr12 123587132 123587664 -20694825 - MLT1G LTR MaLR 0 590 1 380 234 228 23 chr12 123587688 123587859 -20694630 - MIR SINE MIR -29 233 28 468 359 46 14 chr12 123590164 123590381 -20692108 - MIR SINE MIR -19 243 20 480 18 0 0 chr12 123592057 123592114 -20690375 + (TG)n Simple_repeat Simple_repeat 2 58 0 1897 236 35 22 chr12 123592332 123592785 -20689704 + MLT1C LTR MaLR 2 460 -7 191 318 63 0 chr12 123592833 123592896 -20689593 - MIR3 SINE MIR -7 201 135 339 266 63 32 chr12 123592944 123593102 -20689387 - MER103 DNA DNA -2 164 2 255 308 100 0 chr12 123593168 123593260 -20689229 - MIR3 SINE MIR -54 154 53 232 354 21 10 chr12 123593333 123593429 -20689060 + MIR3 SINE MIR 62 158 -50 1054 232 40 61 chr12 123593434 123593583 -20688906 + MLT1A2 LTR MaLR 1 152 -222 2253 137 33 38 chr12 123593583 123593949 -20688540 + THE1B LTR MaLR 1 364 0 1054 232 40 61 chr12 123593949 123594127 -20688362 + MLT1A2 LTR MaLR 152 321 -53 372 126 11 0 chr12 123594181 123594244 -20688245 + MLT1B LTR MaLR 308 375 0 2484 68 0 0 chr12 123594669 123594961 -20687528 - AluY SINE Alu -19 292 1 485 333 10 10 chr12 123594968 123595169 -20687320 + MIR SINE MIR 8 208 -54 956 223 106 22 chr12 123596348 123596621 -20685868 - LTR16C LTR ERVL -8 483 188 2609 147 5 9 chr12 123596631 123597053 -20685436 - L1MA4A LINE L1 -1 6302 5883 762 298 33 33 chr12 123597253 123597528 -20684961 - MLT1K LTR MaLR -76 512 238 246 271 0 29 chr12 123597922 123597992 -20684497 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 609 275 40 50 chr12 123598026 123598248 -20684241 + MLT1K LTR MaLR 283 502 -86 210 301 24 12 chr12 123598274 123598357 -20684132 + (TATG)n Simple_repeat Simple_repeat 2 85 0 848 53 0 58 chr12 123598398 123598569 -20683920 + (TA)n Simple_repeat Simple_repeat 2 162 0 180 339 8 65 chr12 123598628 123598695 -20683794 + L2 LINE L2 3142 3200 -72 2555 58 0 0 chr12 123598695 123598990 -20683499 + AluY SINE Alu 1 295 -16 180 339 8 65 chr12 123598990 123599046 -20683443 + L2 LINE L2 3200 3258 -14 2381 163 68 9 chr12 123599458 123599684 -20682805 + MLT1C LTR MaLR 1 212 -255 461 135 0 101 chr12 123599684 123599773 -20682716 - MADE1 DNA Mariner 0 80 1 2381 163 68 9 chr12 123599773 123599987 -20682502 + MLT1C LTR MaLR 212 467 0 486 297 76 0 chr12 123600558 123600703 -20681786 + MIR SINE MIR 20 175 -87 369 0 0 0 chr12 123600717 123600758 -20681731 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 451 273 137 20 chr12 123601018 123601234 -20681255 - MIR SINE MIR -3 259 20 402 282 59 23 chr12 123602109 123602238 -20680251 + MIR SINE MIR 22 147 -63 635 270 70 15 chr12 123602393 123602593 -20679896 - MIR SINE MIR -51 211 1 180 152 0 0 chr12 123602920 123602953 -20679536 + CT-rich Low_complexity Low_complexity 2 34 0 674 272 61 33 chr12 123603695 123603774 -20678715 - Charlie8 DNA MER1_type -122 219 144 2525 119 113 10 chr12 123603774 123604162 -20678327 - MSTA LTR MaLR 0 428 1 674 272 61 33 chr12 123604162 123604295 -20678194 - Charlie8 DNA MER1_type -197 144 1 287 350 7 49 chr12 123604297 123604440 -20678049 - MIR3 SINE MIR -52 156 20 2228 114 3 0 chr12 123604629 123604919 -20677570 - AluSx SINE Alu -17 295 5 446 252 101 104 chr12 123604938 123605382 -20677107 + MLT1H LTR MaLR 106 548 -1 284 357 76 25 chr12 123605682 123605839 -20676650 + MIR SINE MIR 28 192 -70 370 256 158 24 chr12 123606006 123606170 -20676319 - MLT1L LTR MaLR -210 405 220 2181 123 0 0 chr12 123606399 123606700 -20675789 - AluSx SINE Alu -11 301 1 246 324 6 50 chr12 123607021 123607134 -20675355 - MER5A DNA MER1_type -10 168 60 199 250 132 59 chr12 123607036 123607172 -20675317 + MER5A DNA MER1_type 43 188 -1 * 1356 257 34 44 chr12 123607643 123608056 -20674433 - MLT1I LTR MaLR 0 409 1 357 364 62 10 chr12 123608139 123608334 -20674155 - MIR SINE MIR -48 214 10 24 0 0 0 chr12 123608678 123608702 -20673787 + AT_rich Low_complexity Low_complexity 1 24 0 409 217 79 104 chr12 123608764 123609105 -20673384 + MLT1H LTR MaLR 91 549 0 309 310 42 42 chr12 123609243 123609385 -20673104 + MIR3 SINE MIR 19 160 -48 424 218 128 15 chr12 123609389 123609522 -20672967 + MER117 DNA MER1_type 6 153 -44 309 333 0 0 chr12 123610417 123610519 -20671970 + L2 LINE L2 3212 3313 0 721 306 4 40 chr12 123610657 123610909 -20671580 - MIR SINE MIR -14 248 6 756 176 33 33 chr12 123610930 123611083 -20671406 - MER5A DNA MER1_type -30 159 7 804 285 115 19 chr12 123611102 123611425 -20671064 - MLT1J2 LTR MaLR -42 408 55 363 23 0 0 chr12 123611759 123611803 -20670686 + (TA)n Simple_repeat Simple_repeat 1 44 0 408 278 13 113 chr12 123611880 123612008 -20670481 + L2 LINE L2 3033 3114 -199 2091 118 3 0 chr12 123612008 123612295 -20670194 + AluSx SINE Alu 2 289 -23 408 278 13 113 chr12 123612295 123612475 -20670014 + L2 LINE L2 3114 3310 -3 270 211 0 0 chr12 123612647 123612699 -20669790 - MIR SINE MIR 0 262 211 258 285 16 65 chr12 123613287 123613410 -20669079 - L2 LINE L2 -10 3303 3187 427 236 124 112 chr12 123613411 123613669 -20668820 - MIR SINE MIR 0 262 2 488 288 132 79 chr12 123613728 123614207 -20668282 - MLT1H LTR MaLR -3 546 43 656 279 44 59 chr12 123614310 123614783 -20667706 + L1ME4a LINE L1 5628 6093 -28 535 255 111 38 chr12 123616380 123616615 -20665874 - MIR SINE MIR 0 262 11 1035 186 0 0 chr12 123617311 123617483 -20665006 - FRAM SINE Alu -4 172 1 267 368 61 0 chr12 123617803 123617917 -20664572 + L2 LINE L2 3132 3252 -20 232 348 11 0 chr12 123617970 123618062 -20664427 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 904 217 22 0 chr12 123618860 123619040 -20663449 + MER3 DNA MER1_type 1 184 -25 181 214 24 0 chr12 123619248 123619290 -20663199 + MIR SINE MIR 108 150 -112 261 146 0 0 chr12 123619847 123619895 -20662594 + (CA)n Simple_repeat Simple_repeat 2 49 0 2252 145 58 19 chr12 123619934 123620347 -20662142 - L1M4 LINE L1 -429 6243 5815 * 5041 218 62 68 chr12 123620333 123620659 -20661830 - L1M4 LINE L1 -1980 4664 4338 236 53 0 0 chr12 123620659 123620697 -20661792 - Alu SINE Alu 0 299 262 5041 218 62 68 chr12 123620697 123621507 -20660982 - L1M4 LINE L1 -2306 4338 3503 1719 145 59 14 chr12 123621507 123621796 -20660693 - AluSx SINE Alu -10 302 1 5041 218 62 68 chr12 123621796 123622421 -20660068 - L1M4 LINE L1 -3141 3503 2876 252 122 0 0 chr12 123622670 123622711 -20659778 + (TC)n Simple_repeat Simple_repeat 2 42 0 382 195 0 0 chr12 123622861 123622938 -20659551 - L1MA7 LINE L1 0 6291 6215 4293 142 23 29 chr12 123622938 123623703 -20658786 - L1MA6 LINE L1 -12 6288 5510 1743 211 45 18 chr12 123623713 123624293 -20658196 - L1M4 LINE L1 -3757 2887 2289 3446 243 56 67 chr12 123624354 123626443 -20656046 - L1M4 LINE L1 -4592 2054 4 437 276 48 0 chr12 123626703 123626808 -20655681 + MER81 DNA DNA 1 110 -4 369 0 0 0 chr12 123626825 123626866 -20655623 + (CA)n Simple_repeat Simple_repeat 1 41 0 1014 163 104 20 chr12 123627190 123627392 -20655097 + MER20 DNA MER1_type 1 219 0 1809 137 18 25 chr12 123627458 123627794 -20654695 + AluSx SINE Alu 1 334 0 314 286 0 0 chr12 123628455 123628532 -20653957 + MIR3 SINE MIR 109 185 -23 370 379 0 6 chr12 123628571 123628740 -20653749 - MER117 DNA MER1_type 0 197 30 212 215 0 31 chr12 123628856 123628873 -20653616 + A-rich Low_complexity Low_complexity 3 19 -46 2447 85 0 0 chr12 123628873 123629179 -20653310 + AluY SINE Alu 1 306 -5 212 215 0 31 chr12 123629179 123629226 -20653263 + A-rich Low_complexity Low_complexity 19 65 0 221 318 34 0 chr12 123629240 123629328 -20653161 + MIR SINE MIR 74 164 -98 269 289 72 7 chr12 123629426 123629578 -20652911 + MER104 DNA Tc2 4 165 -15 376 317 70 7 chr12 123629663 123629805 -20652684 - MIR3 SINE MIR -57 151 1 181 346 0 13 chr12 123630148 123630226 -20652263 - L2 LINE L2 -1 3271 3195 755 307 9 13 chr12 123630261 123630518 -20651971 + MIR SINE MIR 2 256 -6 308 238 32 0 chr12 123630524 123630587 -20651902 - L2 LINE L2 0 3313 3249 2531 151 35 33 chr12 123630597 123631022 -20651467 + MSTB LTR MaLR 1 426 0 291 71 0 0 chr12 123631585 123631627 -20650862 + (ATG)n Simple_repeat Simple_repeat 2 43 0 263 381 60 14 chr12 123631630 123631845 -20650644 - MIR SINE MIR -26 236 12 654 299 25 0 chr12 123631868 123632072 -20650417 - MIR SINE MIR -34 228 20 1570 142 107 0 chr12 123632129 123632249 -20650240 + AluJb SINE Alu 1 107 -205 243 0 0 0 chr12 123632249 123632276 -20650213 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1570 142 107 0 chr12 123632276 123632416 -20650073 + AluJb SINE Alu 107 289 -23 665 264 57 57 chr12 123632676 123632888 -20649601 - MIR SINE MIR -23 239 28 342 338 40 0 chr12 123633790 123633941 -20648548 + L3b LINE CR1 1332 1488 -95 27 29 0 0 chr12 123634080 123634114 -20648375 + AT_rich Low_complexity Low_complexity 1 34 0 626 275 46 69 chr12 123634220 123634657 -20647832 - L1ME4a LINE L1 -109 6012 5586 2142 116 3 3 chr12 123634874 123635185 -20647304 - AluSx SINE Alu -1 311 1 1048 126 0 0 chr12 123635185 123635336 -20647153 - L1PA12 LINE L1 -231 5937 5787 1795 153 32 32 chr12 123635401 123635709 -20646780 - AluJo SINE Alu -4 308 1 450 172 32 0 chr12 123635854 123635947 -20646542 + L1MB2 LINE L1 6076 6171 0 429 298 26 7 chr12 123636174 123636325 -20646164 - MIR SINE MIR -14 248 95 1345 181 136 30 chr12 123636496 123636765 -20645724 - AluJo SINE Alu -7 295 3 297 348 92 30 chr12 123636859 123637023 -20645466 + MIR SINE MIR 8 181 -81 1993 128 7 0 chr12 123637023 123637297 -20645192 + AluSx SINE Alu 1 276 -36 324 0 0 0 chr12 123637297 123637333 -20645156 + (TAA)n Simple_repeat Simple_repeat 2 37 0 237 108 0 0 chr12 123637358 123637395 -20645094 + (TC)n Simple_repeat Simple_repeat 1 37 0 1767 235 75 6 chr12 123637449 123637917 -20644572 - MLT1D LTR MaLR 0 505 6 2239 117 3 0 chr12 123638100 123638399 -20644090 - AluSx SINE Alu -12 300 1 219 283 22 0 chr12 123638914 123639052 -20643437 + (TCTA)n Simple_repeat Simple_repeat 2 142 0 237 269 0 109 chr12 123639130 123639249 -20643240 - MER103 DNA DNA -50 116 11 289 311 76 0 chr12 123639480 123639599 -20642890 - MIR SINE MIR -86 176 49 519 320 81 10 chr12 123640620 123640817 -20641672 + MLT1F1 LTR MaLR 5 215 -352 459 240 58 71 chr12 123641023 123641177 -20641312 - MLT1K LTR MaLR -340 248 97 303 244 244 11 chr12 123641325 123641415 -20641074 + L2 LINE L2 3138 3248 -24 352 263 30 0 chr12 123641532 123641631 -20640858 + MIR SINE MIR 70 171 -91 256 248 248 0 chr12 123642252 123642361 -20640128 + MIR SINE MIR 32 167 -95 372 242 78 31 chr12 123642550 123642678 -20639811 - L2 LINE L2 -20 3293 3160 571 289 109 90 chr12 123642724 123643282 -20639207 + MLT1K LTR MaLR 16 584 -4 207 231 0 0 chr12 123643334 123643373 -20639116 + (TA)n Simple_repeat Simple_repeat 2 40 0 1079 158 26 32 chr12 123643668 123643858 -20638631 - MER5A DNA MER1_type 0 189 1 351 178 0 14 chr12 123643971 123644044 -20638445 + MIR SINE MIR 105 176 -86 2392 204 40 57 chr12 123644113 123644715 -20637774 + MLT1G1 LTR MaLR 4 595 0 415 320 77 43 chr12 123645104 123645621 -20636868 + L2 LINE L2 2736 3270 -2 460 237 114 57 chr12 123645819 123646030 -20636459 + MIR SINE MIR 40 262 0 221 163 0 23 chr12 123646030 123646073 -20636416 + (TTG)n Simple_repeat Simple_repeat 2 43 0 324 337 85 20 chr12 123646573 123646772 -20635717 + MIR SINE MIR 4 215 -47 892 250 18 0 chr12 123646784 123647004 -20635485 - MER58A DNA MER1_type 0 224 1 330 233 0 22 chr12 123647007 123647097 -20635392 + MIR SINE MIR 5 92 -170 2531 71 0 0 chr12 123647242 123647539 -20634950 + AluY SINE Alu 1 297 -14 748 165 0 30 chr12 123647665 123647798 -20634691 + FRAM SINE Alu 29 157 -19 248 220 17 0 chr12 123647864 123647923 -20634566 + MIR SINE MIR 6 65 -197 427 39 0 0 chr12 123647937 123647989 -20634500 - MADE1 DNA Mariner 0 80 29 180 111 0 0 chr12 123648114 123648141 -20634348 + (ATGGTG)n Simple_repeat Simple_repeat 6 32 0 216 289 35 63 chr12 123648306 123648448 -20634041 + MIR3 SINE MIR 18 155 -53 666 289 44 26 chr12 123648722 123649080 -20633409 - LTR16A LTR ERVL -30 420 18 384 285 24 8 chr12 123649097 123649220 -20633269 - MIR SINE MIR -106 156 32 319 314 83 44 chr12 123649533 123649707 -20632782 + MIR SINE MIR 15 202 -60 1870 135 30 3 chr12 123649707 123650011 -20632478 - AluSx SINE Alu 0 312 1 319 314 83 44 chr12 123650011 123650065 -20632424 + MIR SINE MIR 202 252 -10 271 281 11 22 chr12 123650654 123650743 -20631746 + GA-rich Low_complexity Low_complexity 3 90 0 202 364 20 10 chr12 123650793 123650892 -20631597 + MIR SINE MIR 74 173 -89 331 209 15 15 chr12 123651057 123651124 -20631365 - MER45B DNA AcHobo -1 1039 973 591 247 123 35 chr12 123651132 123651359 -20631130 - MER45B DNA AcHobo -793 247 1 375 319 14 14 chr12 123651525 123651669 -20630820 - MIR SINE MIR -71 191 48 229 212 8 51 chr12 123652536 123652654 -20629835 + (CATA)n Simple_repeat Simple_repeat 2 114 0 235 243 0 14 chr12 123652726 123652796 -20629693 - L1MCa LINE L1 -4349 2077 2009 245 158 49 24 chr12 123652869 123652951 -20629538 + (CATATA)n Simple_repeat Simple_repeat 6 89 0 554 299 103 9 chr12 123653064 123653278 -20629211 - MIR SINE MIR -13 249 16 2575 68 0 0 chr12 123653701 123654012 -20628477 - AluY SINE Alu 0 311 1 335 267 9 9 chr12 123654187 123654292 -20628197 + L2 LINE L2 3192 3296 -17 236 369 43 7 chr12 123654309 123654450 -20628039 + L2 LINE L2 3121 3266 -6 3107 59 0 0 chr12 123654499 123654888 -20627601 - L1PA8 LINE L1 0 6172 5784 511 283 0 20 chr12 123654888 123655040 -20627449 - MIR SINE MIR -33 229 81 350 376 11 22 chr12 123655692 123655870 -20626619 - MER5B DNA MER1_type -2 176 1 * 499 326 12 0 chr12 123655870 123656038 -20626451 - MIR SINE MIR -73 189 20 205 387 8 8 chr12 123656943 123657067 -20625422 + L3 LINE CR1 903 1026 -551 1214 293 38 22 chr12 123657069 123657264 -20625225 - L2 LINE L2 0 3313 3123 1775 139 0 83 chr12 123657264 123657601 -20624888 + AluSx SINE Alu 1 309 -3 2186 107 3 7 chr12 123657601 123657900 -20624589 + AluSc SINE Alu 1 298 -11 1214 293 38 22 chr12 123657900 123658384 -20624105 - L2 LINE L2 -189 3124 2622 245 295 13 13 chr12 123658419 123658568 -20623921 + (TA)n Simple_repeat Simple_repeat 1 149 0 2218 112 16 50 chr12 123658672 123659018 -20623471 + THE1C LTR MaLR 1 334 -41 2212 101 7 13 chr12 123659018 123659326 -20623163 - AluSc SINE Alu -3 306 1 2218 112 16 50 chr12 123659326 123659363 -20623126 + THE1C LTR MaLR 334 371 -4 420 269 172 14 chr12 123659970 123660115 -20622374 + MER91A DNA MER1_type 1 168 -28 1097 147 24 0 chr12 123660430 123660600 -20621889 - MER58A DNA MER1_type -8 216 43 388 329 59 0 chr12 123660728 123660898 -20621591 - MIR SINE MIR -4 258 79 181 224 20 0 chr12 123661069 123661118 -20621371 - MIR SINE MIR -145 117 68 191 211 0 0 chr12 123661597 123661635 -20620854 - MIR SINE MIR -10 252 215 1693 232 28 30 chr12 123661783 123662248 -20620241 - Charlie4a DNA MER1_type -24 484 21 210 71 0 0 chr12 123662630 123662658 -20619831 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 343 271 34 42 chr12 123662908 123663026 -20619463 - MIR3 SINE MIR -54 154 38 390 307 68 12 chr12 123663133 123663296 -20619193 - MIR SINE MIR -28 234 63 352 339 24 6 chr12 123664392 123664557 -20617932 - MIR SINE MIR -49 213 46 238 347 33 8 chr12 123664824 123664945 -20617544 - L3 LINE CR1 -69 1508 1385 257 317 16 21 chr12 123665070 123665256 -20617233 + L1MC/D LINE L1 5713 5897 -1911 633 174 0 0 chr12 123665739 123665871 -20616618 + CT-rich Low_complexity Low_complexity 1 132 0 2429 91 0 0 chr12 123665932 123666228 -20616261 + AluY SINE Alu 5 300 -11 10609 69 6 4 chr12 123666228 123668410 -20614079 + L1PA7 LINE L1 3979 6154 0 402 300 72 21 chr12 123668794 123669031 -20613458 - L1ME3 LINE L1 -281 5881 5633 258 299 110 8 chr12 123669108 123669235 -20613254 - L2 LINE L2 -9 3304 3165 338 281 8 0 chr12 123669451 123669572 -20612917 + MIR SINE MIR 133 254 -8 290 331 51 13 chr12 123670088 123670245 -20612244 - MIR SINE MIR -14 248 86 419 313 43 6 chr12 123670305 123670468 -20612021 + MIR SINE MIR 59 227 -35 357 220 101 37 chr12 123671711 123671820 -20610669 + MLT1K LTR MaLR 137 252 -336 368 217 70 35 chr12 123671913 123672028 -20610461 + L1MA10 LINE L1 6215 6333 -1 194 143 20 0 chr12 123672237 123672286 -20610203 + (CA)n Simple_repeat Simple_repeat 1 50 0 2587 65 0 0 chr12 123672342 123672651 -20609838 + AluY SINE Alu 2 310 -1 420 282 24 53 chr12 123672670 123672840 -20609649 - MIR SINE MIR -78 184 20 2403 80 3 0 chr12 123673105 123673405 -20609084 - AluSp SINE Alu -12 301 1 331 333 26 33 chr12 123673520 123673793 -20608696 + L2 LINE L2 2259 2529 -785 192 324 37 15 chr12 123674294 123674430 -20608059 + MIR SINE MIR 124 262 0 22 0 0 0 chr12 123674436 123674458 -20608031 + AT_rich Low_complexity Low_complexity 1 22 0 204 246 0 18 chr12 123674919 123674976 -20607513 - MIR SINE MIR -62 146 91 909 284 19 4 chr12 123675006 123675263 -20607226 + MIR SINE MIR 2 262 0 449 291 25 19 chr12 123675258 123675416 -20607073 + L2 LINE L2 2864 3022 -291 * 255 275 0 88 chr12 123675558 123675649 -20606840 + L2 LINE L2 3181 3263 -9 279 0 0 0 chr12 123675770 123675801 -20606688 + (T)n Simple_repeat Simple_repeat 1 31 0 713 232 96 10 chr12 123675991 123676278 -20606211 - MLT1I LTR MaLR 0 409 64 846 222 8 98 chr12 123676391 123676625 -20605864 - MER58A DNA MER1_type -11 213 1 372 235 123 62 chr12 123676746 123676925 -20605564 - MIR SINE MIR -70 192 3 233 339 71 0 chr12 123676999 123677111 -20605378 + MIR SINE MIR 129 248 -14 2167 129 0 0 chr12 123677174 123677468 -20605021 + AluSx SINE Alu 3 296 -16 485 267 64 25 chr12 123677530 123677732 -20604757 + MIR SINE MIR 49 258 -4 935 224 19 52 chr12 123677810 123678020 -20604469 + MER58A DNA MER1_type 1 203 -21 289 236 179 24 chr12 123678056 123678179 -20604310 - L1MC/D LINE L1 -2051 5757 5616 1351 236 54 51 chr12 123679568 123680023 -20602466 - MLT1C LTR MaLR 0 467 1 6223 88 35 8 chr12 123680152 123681034 -20601455 + L1PA10 LINE L1 5262 6167 -1 401 306 58 15 chr12 123681470 123681676 -20600813 + MIR SINE MIR 38 252 -10 360 311 15 30 chr12 123681982 123682002 -20600487 - L2 LINE L2 -1 3271 3252 2150 157 9 0 chr12 123682002 123682346 -20600143 + MER7A DNA MER2_type 2 346 0 360 311 15 30 chr12 123682346 123682457 -20600032 - L2 LINE L2 -20 3252 3142 498 261 94 0 chr12 123683290 123683428 -20599061 - MER96 DNA MER1_type? 0 175 25 1723 183 74 18 chr12 123683442 123683530 -20598959 - L1MB4 LINE L1 0 6180 6098 2369 124 41 8 chr12 123683530 123683892 -20598597 + THE1C LTR MaLR 1 374 -1 1723 183 74 18 chr12 123683892 123684197 -20598292 - L1MB4 LINE L1 -82 6098 5765 1691 142 6 50 chr12 123684197 123684528 -20597961 - MER4A LTR ERV1 -29 635 261 449 141 141 0 chr12 123684528 123684613 -20597876 - MER4A LTR ERV1 -566 98 2 1880 107 65 7 chr12 123684640 123684931 -20597558 - MER4A-int LTR ERV1 -2 6596 6289 2280 211 37 46 chr12 123684931 123685674 -20596815 - L1MB4 LINE L1 -389 5785 5048 2686 90 8 39 chr12 123685674 123686061 -20596428 - THE1C LTR MaLR 0 375 1 2280 211 37 46 chr12 123686061 123686093 -20596396 - L1MB4 LINE L1 -1126 5048 5017 302 238 218 0 chr12 123686129 123686230 -20596259 + MER96 DNA MER1_type? 50 172 -3 787 199 138 25 chr12 123686952 123687148 -20595341 + MER20B DNA MER1_type 1 218 -1 832 93 0 17 chr12 123687444 123687562 -20594927 + L1PA12 LINE L1 5817 5932 -236 654 189 81 14 chr12 123687548 123687696 -20594793 - L1M4 LINE L1 -711 5463 5306 * 953 198 77 0 chr12 123687681 123687903 -20594586 + L1PA13 LINE L1 5921 6159 -4 273 254 131 41 chr12 123687983 123688105 -20594384 - MLT1J2 LTR MaLR 0 450 318 282 206 0 0 chr12 123688147 123688210 -20594279 + CT-rich Low_complexity Low_complexity 3 65 0 634 281 43 9 chr12 123688258 123688468 -20594021 - MLT1J2 LTR MaLR -233 217 1 500 206 31 75 chr12 123688640 123688800 -20593689 - L2 LINE L2 -1 3312 3160 512 303 66 11 chr12 123689959 123690233 -20592256 + L1ME4a LINE L1 5624 5912 -209 184 373 70 30 chr12 123690598 123690799 -20591690 + MIR SINE MIR 5 213 -49 711 234 69 5 chr12 123691359 123691547 -20590942 + L2 LINE L2 2584 2783 -531 460 293 102 19 chr12 123691585 123691751 -20590738 - MIR SINE MIR -3 259 70 2472 82 0 0 chr12 123691751 123692057 -20590432 + AluSg SINE Alu 1 306 -4 460 293 102 19 chr12 123692057 123692105 -20590384 - MIR SINE MIR -192 70 27 1789 165 38 24 chr12 123692120 123692459 -20590030 - MER2 DNA MER2_type 0 344 1 276 318 30 30 chr12 123692504 123692636 -20589853 - MER5B DNA MER1_type -42 136 5 226 327 45 18 chr12 123692639 123692734 -20589755 - MIR SINE MIR -60 202 102 1607 253 51 45 chr12 123692734 123693248 -20589241 + LTR33 LTR ERVL 1 517 -4 226 327 45 18 chr12 123693248 123693262 -20589227 - MIR SINE MIR -160 102 90 2218 154 68 28 chr12 123693337 123693756 -20588733 - MSTC LTR MaLR 0 457 1 880 229 149 8 chr12 123694390 123694652 -20587837 - LTR33A LTR ERVL 0 523 225 276 200 100 14 chr12 123694661 123694731 -20587758 - MLT1H1 LTR MaLR -448 107 32 2500 277 126 45 chr12 123694792 123695801 -20586688 - L1MEc LINE L1 -3692 2523 1597 309 51 0 0 chr12 123695801 123695840 -20586649 + (TG)n Simple_repeat Simple_repeat 2 40 0 2500 277 126 45 chr12 123695840 123697160 -20585329 - L1MEc LINE L1 -4618 1597 35 22 0 0 0 chr12 123697250 123697272 -20585217 + AT_rich Low_complexity Low_complexity 1 22 0 2217 110 16 0 chr12 123698129 123698439 -20584050 - L1PB1 LINE L1 -3 6148 5834 345 296 122 26 chr12 123699001 123699190 -20583299 + MIR SINE MIR 16 222 -40 260 264 166 57 chr12 123699697 123699890 -20582599 - MIR SINE MIR -9 253 40 26 0 0 0 chr12 123699970 123699996 -20582493 + AT_rich Low_complexity Low_complexity 1 26 0 241 246 0 16 chr12 123700748 123700809 -20581680 - MLT1K LTR MaLR -2 553 494 2297 126 17 22 chr12 123700815 123701220 -20581269 + L1MA5A LINE L1 5803 6205 -92 191 346 69 0 chr12 123701331 123701461 -20581028 - MIR SINE MIR 0 262 124 383 89 18 0 chr12 123701484 123701540 -20580949 + L1MA5A LINE L1 6238 6294 -3 300 270 96 77 chr12 123701548 123701961 -20580528 - MLT1H LTR MaLR -58 491 41 504 228 59 0 chr12 123702073 123702209 -20580280 + L1ME3A LINE L1 5793 5936 -234 308 248 82 73 chr12 123702292 123702498 -20579991 + L1ME3A LINE L1 5962 6169 -1 219 204 0 0 chr12 123703831 123703880 -20578609 + GA-rich Low_complexity Low_complexity 3 51 0 188 277 0 0 chr12 123703956 123704003 -20578486 - L2 LINE L2 -16 3297 3251 311 344 16 8 chr12 123704515 123704637 -20577852 - MIR SINE MIR -119 143 21 1211 322 53 33 chr12 123704761 123705271 -20577218 - MLT1K LTR MaLR -66 522 3 211 225 100 79 chr12 123705379 123705519 -20576970 - MIR3 SINE MIR -39 169 19 2434 58 3 7 chr12 123705897 123706206 -20576283 - AluY SINE Alu -2 309 2 1033 200 10 15 chr12 123706319 123706519 -20575970 + MER58A DNA MER1_type 26 224 0 324 324 53 8 chr12 123706583 123706808 -20575681 + Charlie8 DNA MER1_type 12 233 -2184 432 293 38 23 chr12 123707126 123707259 -20575230 - MIR3 SINE MIR -62 146 12 459 152 86 9 chr12 123707286 123707391 -20575098 - MER20B DNA MER1_type -7 776 664 270 0 0 0 chr12 123707393 123707423 -20575066 + (CA)n Simple_repeat Simple_repeat 2 31 0 957 299 98 9 chr12 123707458 123707946 -20574543 - MER20B DNA MER1_type -233 550 1 278 262 36 0 chr12 123708764 123708848 -20573641 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 564 118 118 44 chr12 123708947 123709082 -20573407 - L1 LINE L1 -789 5357 5213 2017 199 14 6 chr12 123710129 123710491 -20571998 + MLT1A1 LTR MaLR 1 365 0 253 340 21 0 chr12 123710550 123710644 -20571845 - MIR SINE MIR -32 230 135 319 191 12 12 chr12 123710686 123710770 -20571719 + CT-rich Low_complexity Low_complexity 1 84 0 346 293 29 52 chr12 123710770 123710929 -20571560 - MIR3 SINE MIR -63 145 3 2863 75 0 14 chr12 123711120 123711479 -20571010 + L1PA8A LINE L1 5777 6130 -1 1919 146 3 9 chr12 123711492 123711815 -20570674 + L1MA8 LINE L1 5804 6124 -167 220 45 91 0 chr12 123711875 123711919 -20570570 + A-rich Low_complexity Low_complexity 6 53 0 309 290 71 32 chr12 123711950 123712105 -20570384 - L1MC4a LINE L1 -1763 6045 5885 344 295 79 58 chr12 123713833 123714023 -20568466 + L2 LINE L2 3120 3313 0 272 308 39 0 chr12 123714027 123714105 -20568384 + L2 LINE L2 3192 3272 0 905 245 3 96 chr12 123714153 123714230 -20568259 - L1ME LINE L1 -5437 633 550 938 98 12 12 chr12 123714230 123714403 -20568086 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 905 245 3 96 chr12 123714403 123714648 -20567841 - L1ME LINE L1 -5520 550 341 653 245 12 37 chr12 123714655 123714818 -20567671 - L1ME LINE L1 -5844 226 68 757 85 43 6 chr12 123714818 123714982 -20567507 + (TCTA)n Simple_repeat Simple_repeat 2 171 0 808 323 115 46 chr12 123714990 123715486 -20567003 - LTR67 LTR ERVL -6 551 22 215 200 36 0 chr12 123715515 123715570 -20566919 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2267 121 12 23 chr12 123715738 123716225 -20566264 - L1MA6 LINE L1 0 6300 5693 201 398 0 0 chr12 123716498 123716606 -20565883 - MIR SINE MIR -71 191 84 291 265 0 12 chr12 123716685 123716768 -20565721 - MLT1I LTR MaLR -11 398 317 384 248 109 40 chr12 123716773 123716874 -20565615 - MER81 DNA DNA -5 109 2 531 214 179 6 chr12 123716962 123717130 -20565359 - MLT1J1 LTR MaLR -235 211 15 2089 174 8 14 chr12 123717178 123717545 -20564944 - MLT1A1 LTR MaLR 0 365 1 435 285 122 19 chr12 123717637 123717949 -20564540 - L1ME4a LINE L1 -19 6102 5759 796 269 42 34 chr12 123717965 123718016 -20564473 + MIR SINE MIR 7 56 -206 1853 288 22 81 chr12 123718016 123718176 -20564313 + MER115 DNA AcHobo 1 169 -524 2076 119 17 3 chr12 123718176 123718470 -20564019 - AluSc SINE Alu -11 298 1 1853 288 22 81 chr12 123718470 123718963 -20563526 + MER115 DNA AcHobo 169 608 -85 2458 66 0 10 chr12 123718963 123719264 -20563225 - AluY SINE Alu -13 298 1 1853 288 22 81 chr12 123719264 123719346 -20563143 + MER115 DNA AcHobo 608 693 0 796 269 42 34 chr12 123719346 123719532 -20562957 + MIR SINE MIR 56 246 -16 230 81 27 0 chr12 123719557 123719594 -20562895 + (TTA)n Simple_repeat Simple_repeat 2 39 0 404 298 45 22 chr12 123719604 123719782 -20562707 - L1ME4a LINE L1 -377 5744 5563 878 264 190 19 chr12 123720480 123720912 -20561577 + LTR33 LTR ERVL 16 521 0 605 304 30 0 chr12 123720981 123721149 -20561340 + MIR SINE MIR 2 174 -88 576 73 0 0 chr12 123721150 123721218 -20561271 - AluJ/FRAM SINE Alu -17 295 228 235 350 154 0 chr12 123721320 123721463 -20561026 - MLT1H1 LTR MaLR 0 595 431 732 284 55 32 chr12 123721466 123721776 -20560713 - MLT1H1 LTR MaLR -225 330 14 2686 145 27 2 chr12 123721866 123722273 -20560216 - L1PA15 LINE L1 0 6165 5749 1310 298 40 64 chr12 123722752 123723454 -20559035 - MER21B LTR ERV1 -155 708 24 1677 171 34 24 chr12 123723468 123723766 -20558723 - AluJo SINE Alu -3 309 9 331 287 119 35 chr12 123724108 123724251 -20558238 + MIR3 SINE MIR 33 187 -21 398 363 65 56 chr12 123724375 123724571 -20557918 - L2 LINE L2 0 3272 3070 2321 77 7 10 chr12 123724571 123724881 -20557608 + AluSc SINE Alu 1 309 0 398 363 65 56 chr12 123724881 123725006 -20557483 - L2 LINE L2 -202 3070 2948 735 249 65 32 chr12 123725287 123725504 -20556985 - MIR SINE MIR -6 256 33 372 333 116 14 chr12 123725672 123725888 -20556601 - MIR SINE MIR -14 248 11 233 240 93 40 chr12 123726521 123726596 -20555893 - Charlie4 DNA MER1_type -16 1945 1867 616 274 79 25 chr12 123726716 123726957 -20555532 + MIR SINE MIR 2 255 -7 234 0 0 0 chr12 123728468 123728494 -20553995 + (TA)n Simple_repeat Simple_repeat 2 27 0 259 242 22 22 chr12 123728498 123728589 -20553900 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 307 142 9 47 chr12 123728605 123728711 -20553778 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 332 286 54 9 chr12 123728874 123728986 -20553503 - MIR SINE MIR -38 224 108 468 266 27 33 chr12 123729930 123730114 -20552375 + MER53 DNA DNA 2 184 -5 219 283 17 0 chr12 123730333 123730393 -20552096 - MIR SINE MIR -90 172 112 276 296 34 0 chr12 123730466 123730554 -20551935 - MIR SINE MIR -138 124 34 330 353 21 11 chr12 123730696 123730883 -20551606 + MIR3 SINE MIR 18 206 -2 195 250 29 88 chr12 123730989 123731057 -20551432 + MIR SINE MIR 58 121 -87 1267 230 84 26 chr12 123731320 123731711 -20550778 - MER119 DNA MER1_type -1 582 169 428 279 49 46 chr12 123731716 123732023 -20550466 + L1MDa LINE L1 35 388 -6152 1832 123 39 3 chr12 123732465 123732749 -20549740 - L1MA5 LINE L1 -10 6290 5997 221 264 94 0 chr12 123732888 123732941 -20549548 + L2 LINE L2 3242 3299 -14 249 33 0 0 chr12 123732942 123732972 -20549517 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 316 299 9 28 chr12 123733124 123733231 -20549258 - MIR SINE MIR -99 163 59 937 213 29 38 chr12 123733481 123733721 -20548768 - L1ME2 LINE L1 -9 6155 5918 501 268 145 22 chr12 123733931 123734159 -20548330 + MIR SINE MIR 7 262 0 443 230 73 26 chr12 123735082 123735218 -20547271 - MIR SINE MIR -58 150 55 807 236 0 31 chr12 123735474 123735669 -20546820 + MER53 DNA DNA 1 189 0 944 249 187 42 chr12 123735907 123736410 -20546079 + MLT1G LTR MaLR 15 590 0 226 243 311 0 chr12 123736428 123736502 -20545987 + MIR SINE MIR 56 152 -110 245 321 45 27 chr12 123736502 123736614 -20545875 - MIR SINE MIR -61 147 34 497 241 143 8 chr12 123736665 123736741 -20545748 + MIR SINE MIR 112 176 -86 312 27 0 0 chr12 123736741 123736778 -20545711 + (CA)n Simple_repeat Simple_repeat 2 38 0 497 241 143 8 chr12 123736778 123736834 -20545655 + MIR SINE MIR 176 262 0 276 252 78 39 chr12 123737565 123737668 -20544821 - MIR SINE MIR -127 135 29 420 298 82 43 chr12 123737714 123737949 -20544540 + MIR SINE MIR 15 258 -4 427 301 51 26 chr12 123738348 123738504 -20543985 - MLT1I LTR MaLR -249 160 1 779 264 35 18 chr12 123738535 123738762 -20543727 - MIR SINE MIR 0 262 32 497 267 35 0 chr12 123739027 123739143 -20543346 + L2 LINE L2 3193 3312 -1 228 245 0 0 chr12 123740342 123740391 -20542098 - MIR SINE MIR -29 233 185 252 333 49 0 chr12 123740399 123740501 -20541988 - MER94 DNA DNA 0 134 28 493 254 30 10 chr12 123740524 123740671 -20541818 - MIR SINE MIR -69 193 46 462 36 0 0 chr12 123740896 123740952 -20541537 + (CA)n Simple_repeat Simple_repeat 2 57 0 576 297 18 45 chr12 123741160 123741382 -20541107 + MER102a DNA MER1_type 115 330 0 505 235 82 29 chr12 123741513 123741683 -20540806 - MER117 DNA MER1_type -10 187 9 261 228 0 0 chr12 123742361 123742440 -20540049 + (TG)n Simple_repeat Simple_repeat 1 79 0 1989 167 51 35 chr12 123742477 123743021 -20539468 - MLT2A2 LTR ERVL 0 554 1 209 357 0 32 chr12 123743094 123743248 -20539241 + (TATATG)n Simple_repeat Simple_repeat 6 154 0 222 91 0 0 chr12 123743733 123743766 -20538723 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 225 0 0 0 chr12 123743765 123743790 -20538699 + (GA)n Simple_repeat Simple_repeat 1 25 0 478 271 16 0 chr12 123744026 123744148 -20538341 + MER117 DNA MER1_type 68 191 -6 975 218 0 0 chr12 123744256 123744430 -20538059 - MER96 DNA MER1_type -1 174 1 253 212 188 0 chr12 123744797 123744882 -20537607 + MIR SINE MIR 158 258 -4 701 229 4 0 chr12 123744897 123745169 -20537320 + (CAT)n Simple_repeat Simple_repeat 1 273 0 844 141 0 22 chr12 123745184 123745368 -20537121 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 189 195 0 0 chr12 123745393 123745434 -20537055 + (CAT)n Simple_repeat Simple_repeat 2 42 0 637 226 11 0 chr12 123746157 123746334 -20536155 + GA-rich Low_complexity Low_complexity 1 179 0 2180 109 0 0 chr12 123746397 123746681 -20535808 + AluSx SINE Alu 27 310 -2 199 255 0 39 chr12 123747352 123747403 -20535086 - MIR SINE MIR -74 134 86 257 200 0 0 chr12 123747503 123747553 -20534936 + MIR SINE MIR 103 152 -110 202 400 0 0 chr12 123747564 123747684 -20534805 - MIR SINE MIR -6 256 137 2032 138 24 0 chr12 123748103 123748400 -20534089 + AluSx SINE Alu 1 304 -8 240 265 73 0 chr12 123748457 123748525 -20533964 - L2 LINE L2 -3 3269 3197 517 241 5 96 chr12 123749778 123749977 -20532512 - MIR SINE MIR -54 208 28 190 302 246 22 chr12 123750085 123750264 -20532225 - MIR SINE MIR -12 250 32 4387 207 26 13 chr12 123750444 123751691 -20530798 + L1MA9 LINE L1 5005 6273 -39 331 325 56 0 chr12 123751766 123751892 -20530597 + L2 LINE L2 3134 3266 -6 735 266 131 27 chr12 123751972 123752025 -20530464 + MER102a DNA MER1_type 3 49 -1368 916 277 33 71 chr12 123752025 123752448 -20530041 - MLT1I LTR MaLR -2 407 1 735 266 131 27 chr12 123752448 123752691 -20529798 + MER102a DNA MER1_type 49 330 0 507 299 123 50 chr12 123753221 123753602 -20528887 - MLT1I LTR MaLR 0 409 1 1946 146 0 0 chr12 123753667 123753947 -20528542 + AluSx SINE Alu 11 290 -22 34 24 0 0 chr12 123753947 123753988 -20528501 + AT_rich Low_complexity Low_complexity 1 41 0 375 244 103 123 chr12 123754047 123754436 -20528053 + L2 LINE L2 2928 3308 -5 430 317 50 11 chr12 123754537 123754717 -20527772 - MIR SINE MIR -74 188 2 2253 113 118 23 chr12 123754840 123755231 -20527258 + MSTA LTR MaLR 1 428 0 1060 198 244 23 chr12 123755347 123755696 -20526793 + MLT1D LTR MaLR 77 502 -3 232 293 75 8 chr12 123756022 123756155 -20526334 + MIR SINE MIR 113 254 -8 29 0 0 0 chr12 123758251 123758280 -20524209 + AT_rich Low_complexity Low_complexity 1 29 0 222 307 260 0 chr12 123758617 123758744 -20523745 + MIR SINE MIR 37 196 -66 587 271 117 0 chr12 123759145 123759333 -20523156 - MIR SINE MIR -6 256 47 1894 135 33 20 chr12 123759753 123760057 -20522432 + AluSx SINE Alu 1 308 -4 266 229 69 99 chr12 123760164 123760295 -20522194 - L2 LINE L2 -6 3266 3140 23 33 0 0 chr12 123760548 123760578 -20521911 + AT_rich Low_complexity Low_complexity 1 30 0 865 253 113 36 chr12 123760591 123760996 -20521493 + MER57A LTR ERV1 1 403 0 533 121 55 11 chr12 123760996 123761087 -20521402 - L1MD2 LINE L1 -37 6322 6228 261 0 0 0 chr12 123761418 123761447 -20521042 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 288 299 22 22 chr12 123761489 123761623 -20520866 - L2 LINE L2 -291 2981 2848 273 293 87 27 chr12 123762516 123762666 -20519823 - MIR SINE MIR -23 239 81 497 245 80 77 chr12 123762666 123762952 -20519537 - MER96B DNA MER1_type? 0 417 131 1483 167 31 31 chr12 123762960 123763254 -20519235 - AluJb SINE Alu -18 294 1 204 40 0 0 chr12 123763254 123763279 -20519210 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 444 104 0 0 chr12 123763301 123763368 -20519121 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 2250 113 0 22 chr12 123763382 123763700 -20518789 - AluSx SINE Alu -1 311 1 1947 107 0 8 chr12 123763702 123763965 -20518524 - AluSx SINE Alu -16 296 36 432 248 86 0 chr12 123763970 123764075 -20518414 + MER96B DNA MER1_type? 302 415 -2 878 273 73 85 chr12 123764407 123764621 -20517868 - L2 LINE L2 0 3313 3098 2022 119 7 23 chr12 123764621 123764923 -20517566 + AluSx SINE Alu 3 299 -13 878 273 73 85 chr12 123764923 123765495 -20516994 - L2 LINE L2 -215 3098 2549 188 305 16 55 chr12 123765652 123765780 -20516709 + MIR SINE MIR 29 151 -111 189 0 0 0 chr12 123766088 123766109 -20516380 + (T)n Simple_repeat Simple_repeat 1 21 0 211 220 165 33 chr12 123766815 123766906 -20515583 + MIR3 SINE MIR 104 206 -2 2333 96 6 10 chr12 123767745 123768057 -20514432 - AluSp SINE Alu -2 311 1 208 362 18 37 chr12 123768215 123768433 -20514056 + MIR SINE MIR 48 261 -1 219 292 9 71 chr12 123769320 123769433 -20513056 + L2 LINE L2 3163 3268 -4 371 341 66 30 chr12 123770054 123770221 -20512268 - L2 LINE L2 -5 3267 3095 402 296 24 8 chr12 123770296 123770421 -20512068 + MIR SINE MIR 106 232 -30 218 213 0 0 chr12 123770460 123770507 -20511982 - MIR SINE MIR -114 148 102 234 193 108 72 chr12 123771465 123771548 -20510941 + L1ME4a LINE L1 5959 6044 -77 403 103 0 0 chr12 123771737 123771805 -20510684 + Alu SINE Alu 245 312 0 255 274 86 8 chr12 123771939 123772056 -20510433 - MER103 DNA DNA -29 137 12 1884 225 81 30 chr12 123772151 123772182 -20510307 + MLT1H LTR MaLR 18 46 -503 4817 113 9 11 chr12 123772182 123772875 -20509614 + LTR8 LTR ERV1 1 691 0 1884 225 81 30 chr12 123772875 123773349 -20509140 + MLT1H LTR MaLR 46 549 0 2083 133 10 3 chr12 123773561 123773861 -20508628 - AluSx SINE Alu -10 302 1 287 254 35 99 chr12 123774962 123775104 -20507385 - MER113 DNA MER1_type? -46 475 343 558 215 140 47 chr12 123775105 123775440 -20507049 + MLT1D LTR MaLR 1 394 -230 346 198 139 0 chr12 123775451 123775537 -20506952 + MLT1D LTR MaLR 500 597 -29 655 253 62 45 chr12 123775545 123775853 -20506636 - MER113 DNA MER1_type? -208 313 1 514 269 55 47 chr12 123776109 123776365 -20506124 + MIR SINE MIR 5 262 0 245 234 106 21 chr12 123776799 123776893 -20505596 + MIR SINE MIR 14 115 -147 974 258 21 0 chr12 123776901 123777134 -20505355 - MIR SINE MIR -4 258 21 2686 100 16 0 chr12 123777297 123777666 -20504823 + THE1C LTR MaLR 1 375 0 214 179 15 15 chr12 123777727 123777794 -20504695 + CT-rich Low_complexity Low_complexity 3 69 0 241 259 0 0 chr12 123777796 123777850 -20504639 - L2 LINE L2 -1 3271 3218 189 363 10 10 chr12 123778581 123778683 -20503806 + MIR SINE MIR 64 165 -97 435 256 148 69 chr12 123779400 123779705 -20502784 + MLT1H LTR MaLR 221 549 0 244 308 131 8 chr12 123779756 123779886 -20502603 - MIR SINE MIR -48 214 69 494 276 38 11 chr12 123779910 123780095 -20502394 + MIR SINE MIR 59 248 -14 192 155 35 17 chr12 123781533 123781591 -20500898 + (TATAA)n Simple_repeat Simple_repeat 5 63 0 293 177 16 16 chr12 123781634 123781696 -20500793 - L1ME4a LINE L1 -91 6030 5969 280 230 5 43 chr12 123781801 123781988 -20500501 + (TA)n Simple_repeat Simple_repeat 1 180 0 1957 141 18 41 chr12 123782087 123782174 -20500315 - MER7A DNA MER2_type -2692 346 258 2110 146 0 0 chr12 123782174 123782483 -20500006 - AluSx SINE Alu -3 309 1 1957 141 18 41 chr12 123782483 123782736 -20499753 - MER7A DNA MER2_type -2780 258 16 952 134 54 0 chr12 123782764 123782913 -20499576 - Tigger3(Golem) DNA MER2_type -2740 289 133 244 188 0 0 chr12 123783065 123783113 -20499376 + L2 LINE L2 3266 3313 0 273 233 27 0 chr12 123783704 123783777 -20498712 + L2 LINE L2 2996 3070 -243 1093 229 22 92 chr12 123783820 123783962 -20498527 - L1ME1 LINE L1 -1 6165 6015 2625 71 0 0 chr12 123783962 123784272 -20498217 + AluY SINE Alu 1 310 -1 1093 229 22 92 chr12 123784272 123784584 -20497905 - L1ME1 LINE L1 -151 6015 5743 237 322 0 11 chr12 123784584 123784674 -20497815 - MIR SINE MIR -147 115 27 226 273 37 0 chr12 123784847 123784927 -20497562 - MIR SINE MIR -85 123 35 249 33 0 0 chr12 123785359 123785389 -20497100 + (CA)n Simple_repeat Simple_repeat 1 30 0 204 298 14 50 chr12 123785801 123785942 -20496547 + (CATA)n Simple_repeat Simple_repeat 1 136 0 265 318 15 15 chr12 123786013 123786145 -20496344 + (CATATA)n Simple_repeat Simple_repeat 4 135 0 502 226 52 0 chr12 123787266 123787381 -20495108 - L2 LINE L2 -1 3312 3192 262 191 0 29 chr12 123787606 123787674 -20494815 + (TA)n Simple_repeat Simple_repeat 1 66 0 586 319 64 38 chr12 123787719 123788293 -20494196 - L1ME4a LINE L1 -287 5883 5284 196 216 0 0 chr12 123788914 123788951 -20493538 - L2 LINE L2 -15 3298 3262 238 294 127 10 chr12 123788974 123789101 -20493388 + MIR SINE MIR 34 173 -65 416 317 66 6 chr12 123789170 123789337 -20493152 - MIR SINE MIR -64 198 22 362 326 84 50 chr12 123789655 123789916 -20492573 - L2 LINE L2 0 3272 3003 181 389 115 0 chr12 123789906 123790019 -20492470 - MER5A DNA MER1_type -26 163 38 * 424 250 0 104 chr12 123790062 123790226 -20492263 + MER5B DNA MER1_type 2 148 -30 212 0 0 35 chr12 123790881 123790910 -20491579 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2229 110 0 0 chr12 123791573 123791872 -20490617 - AluSx SINE Alu -13 299 1 282 204 0 19 chr12 123791966 123792020 -20490469 - LTR16C LTR ERVL -1 490 438 325 313 247 0 chr12 123792031 123792213 -20490276 + MIR SINE MIR 4 230 -32 180 315 68 41 chr12 123792268 123792414 -20490075 + L2 LINE L2 3139 3288 -25 259 271 29 0 chr12 123792470 123792540 -20489949 - MIR SINE MIR -112 150 79 305 211 114 61 chr12 123792780 123792894 -20489595 - LTR67 LTR ERVL -12 545 426 409 352 111 12 chr12 123793186 123793348 -20489141 + MER91A DNA MER1_type 1 178 -18 645 270 75 46 chr12 123793390 123793670 -20488819 + MLT1H1 LTR MaLR 1 240 -315 273 202 165 46 chr12 123793666 123793775 -20488714 - MLT1H1 LTR MaLR -431 124 3 * 539 248 8 39 chr12 123793788 123793917 -20488572 - L2 LINE L2 -4 3309 3185 466 250 0 0 chr12 123795004 123795104 -20487385 + MER103 DNA DNA 21 120 -46 416 305 75 29 chr12 123795228 123795402 -20487087 - MER5A DNA MER1_type -7 182 1 228 230 294 8 chr12 123795405 123795531 -20486958 - MIR3 SINE MIR -14 194 33 385 328 0 33 chr12 123795740 123795862 -20486627 - MIR SINE MIR -119 143 26 553 306 97 0 chr12 123795876 123796082 -20486407 + MIR SINE MIR 27 252 -10 255 333 36 14 chr12 123796234 123796372 -20486117 - L3 LINE CR1 -3 1574 1434 1721 119 4 12 chr12 123796519 123796771 -20485718 - AluSx SINE Alu -62 250 1 342 240 19 39 chr12 123796814 123796918 -20485571 - MER103 DNA DNA -57 109 8 21 0 0 0 chr12 123798363 123798384 -20484105 + AT_rich Low_complexity Low_complexity 1 21 0 1940 124 0 4 chr12 123798400 123798674 -20483815 - AluSx SINE Alu -34 278 6 794 173 58 6 chr12 123799140 123799296 -20483193 - Tigger7 DNA MER2_type -1 2586 2423 535 320 49 52 chr12 123799357 123799704 -20482785 - MLT1K LTR MaLR -58 530 185 303 291 80 114 chr12 123799712 123800062 -20482427 + L2 LINE L2 2935 3272 0 365 287 101 67 chr12 123800290 123800558 -20481931 - LTR33 LTR ERVL -7 514 238 524 195 41 84 chr12 123800602 123800733 -20481756 - LTR33 LTR ERVL -362 159 30 21 0 0 0 chr12 123800817 123800838 -20481651 + AT_rich Low_complexity Low_complexity 1 21 0 405 331 51 34 chr12 123800982 123801275 -20481214 + L3 LINE CR1 445 742 -835 366 281 35 0 chr12 123801735 123801849 -20480640 - L1MC4 LINE L1 -1 8041 7924 512 310 91 25 chr12 123803513 123803710 -20478779 - MIR SINE MIR -34 228 19 392 295 157 19 chr12 123803736 123803946 -20478543 + L3 LINE CR1 1333 1571 -6 887 274 113 47 chr12 123804073 123804898 -20477591 - L2 LINE L2 0 3313 2443 405 0 0 0 chr12 123805004 123805049 -20477440 + (CA)n Simple_repeat Simple_repeat 1 45 0 781 288 153 30 chr12 123805886 123806354 -20476135 + L2 LINE L2 2551 3067 -246 1755 209 39 64 chr12 123806444 123806884 -20475605 - MLT1D LTR MaLR 0 505 78 2321 150 28 0 chr12 123806884 123807238 -20475251 + THE1B LTR MaLR 1 364 0 1755 209 39 64 chr12 123807238 123807313 -20475176 - MLT1D LTR MaLR -427 78 3 316 288 0 58 chr12 123807342 123807481 -20475008 + L2 LINE L2 3180 3310 -3 321 241 24 12 chr12 123807500 123807583 -20474906 + LTR33 LTR ERVL 29 112 -409 223 326 161 61 chr12 123807590 123807869 -20474620 + L2 LINE L2 2943 3249 -23 286 286 0 0 chr12 123808016 123808086 -20474403 - MIR SINE MIR -18 244 175 482 70 14 0 chr12 123808243 123808314 -20474175 + (GA)n Simple_repeat Simple_repeat 1 72 0 1634 173 16 29 chr12 123808813 123809120 -20473369 - AluJb SINE Alu -9 303 1 724 287 70 30 chr12 123809247 123809575 -20472914 + LTR33 LTR ERVL 9 349 -172 9426 83 4 11 chr12 123810369 123811583 -20470906 + HERVL LTR ERVL 1469 2674 -2980 821 122 442 5 chr12 123811683 123811880 -20470609 - THE1C-int LTR MaLR -1297 283 1 2069 164 32 27 chr12 123811880 123812253 -20470236 - THE1C LTR MaLR 0 375 1 1558 158 10 143 chr12 123812253 123812741 -20469748 - L1 LINE L1 -2565 5000 4578 725 204 13 20 chr12 123812844 123812996 -20469493 - MLT1A1 LTR MaLR -214 151 1 3792 141 21 28 chr12 123813964 123814184 -20468305 - L1 LINE L1 -4774 2791 2571 2247 116 26 0 chr12 123814184 123814487 -20468002 - AluY SINE Alu 0 311 1 3792 141 21 28 chr12 123814487 123814992 -20467497 - L1 LINE L1 -4994 2571 2071 224 242 84 42 chr12 123815175 123815270 -20467219 + L2 LINE L2 3168 3266 -6 334 272 0 125 chr12 123815284 123815420 -20467069 + L2 LINE L2 3191 3309 -4 2235 122 0 0 chr12 123815700 123816004 -20466485 + AluSx SINE Alu 2 305 -7 794 239 45 5 chr12 123816006 123816207 -20466282 + MER65C LTR ERV1 1 209 -252 327 248 21 71 chr12 123817100 123817241 -20465248 + L1M4 LINE L1 5106 5239 -907 425 70 18 0 chr12 123817277 123817334 -20465155 + MADE1 DNA Mariner 1 58 -22 8119 77 29 1 chr12 123817483 123818549 -20463940 + HERVL LTR ERVL 56 1151 -4503 9497 97 7 1 chr12 123818649 123819973 -20462516 + L1P LINE L1 1460 2791 -3355 802 85 19 19 chr12 123820073 123820179 -20462310 + L1PA10 LINE L1 6059 6164 -4 411 269 156 30 chr12 123820431 123820653 -20461836 + MIR SINE MIR 19 260 -2 1599 187 3 26 chr12 123820989 123821299 -20461190 - AluJb SINE Alu -9 303 1 471 160 64 0 chr12 123821430 123821524 -20460965 - MER53 DNA DNA -89 100 1 813 161 90 7 chr12 123821809 123821964 -20460525 - MSTA LTR MaLR -259 169 2 264 167 0 0 chr12 123822196 123822244 -20460245 + (TA)n Simple_repeat Simple_repeat 1 48 0 315 329 97 31 chr12 123822427 123822733 -20459756 - MLT1I LTR MaLR 0 409 78 7519 87 8 2 chr12 123823177 123824149 -20458340 + HERVL-A1 LTR ERVL 4677 5654 0 2979 90 2 10 chr12 123824149 123824551 -20457938 + MLT2A1 LTR ERVL 1 399 -45 3134 119 26 9 chr12 123825395 123825856 -20456633 - L1PA16 LINE L1 -2 6164 5696 7128 163 18 29 chr12 123825956 123827278 -20455211 + L1P LINE L1 172 1479 -4667 978 187 0 0 chr12 123827379 123827550 -20454939 - L1 LINE L1 -1344 4802 4632 305 87 0 22 chr12 123827552 123827598 -20454891 - MADE1 DNA Mariner -35 45 1 427 256 59 51 chr12 123828754 123828981 -20453508 + MLT1H LTR MaLR 324 549 0 258 299 52 23 chr12 123828982 123829200 -20453289 - MLT1L LTR MaLR -361 254 2 288 135 0 0 chr12 123830354 123830406 -20452083 + AluSc SINE Alu 247 298 -1 214 414 11 0 chr12 123830794 123830881 -20451608 + L2 LINE L2 338 425 -2889 596 134 12 0 chr12 123831641 123831723 -20450766 - AluS SINE Alu -228 84 2 185 326 0 0 chr12 123832121 123832170 -20450319 - L2 LINE L2 -15 3257 3209 22 35 0 0 chr12 123832233 123832262 -20450227 + AT_rich Low_complexity Low_complexity 1 29 0 524 287 56 41 chr12 123832542 123832737 -20449752 - MER63A DNA MER1_type -12 198 1 189 162 114 114 chr12 123832761 123832866 -20449623 - L2 LINE L2 -664 2650 2546 295 307 74 12 chr12 123832900 123833019 -20449470 - MIR SINE MIR -65 143 31 431 264 168 32 chr12 123833647 123833802 -20448687 - MIR3 SINE MIR -1 207 32 26 82 0 0 chr12 123834003 123834064 -20448425 + AT_rich Low_complexity Low_complexity 1 61 0 2936 247 52 36 chr12 123834196 123835326 -20447163 + L1MEc LINE L1 323 1470 -4926 2318 103 0 0 chr12 123835326 123835627 -20446862 + AluSg SINE Alu 1 301 -9 8791 102 76 0 chr12 123835742 123836986 -20445503 + THE1A-int LTR MaLR 242 1580 0 2627 118 3 3 chr12 123836986 123837341 -20445148 + THE1A LTR MaLR 1 355 0 509 179 26 0 chr12 123837543 123837621 -20444868 - AluS SINE Alu -231 81 2 2829 103 8 13 chr12 123839438 123839815 -20442674 + THE1C LTR MaLR 1 375 0 444 246 46 80 chr12 123840344 123840450 -20442039 - MIR SINE MIR -42 220 100 21 0 0 0 chr12 123840450 123840471 -20442018 + AT_rich Low_complexity Low_complexity 1 21 0 444 246 46 80 chr12 123840471 123840519 -20441970 - MIR SINE MIR -162 100 52 297 250 15 29 chr12 123840524 123840592 -20441897 - MIR SINE MIR -165 97 31 252 0 0 0 chr12 123840740 123840768 -20441721 + (TG)n Simple_repeat Simple_repeat 1 28 0 315 220 340 7 chr12 123841479 123841620 -20440869 - MER5A DNA MER1_type 0 189 2 3416 135 4 4 chr12 123841986 123842483 -20440006 - LOR1a LTR ERV1 0 497 1 25 31 0 0 chr12 123842487 123842519 -20439970 + AT_rich Low_complexity Low_complexity 1 32 0 227 86 0 0 chr12 123842519 123842554 -20439935 - L1PB1 LINE L1 0 6151 6117 243 0 0 0 chr12 123842570 123842597 -20439892 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr12 123843007 123843029 -20439460 + AT_rich Low_complexity Low_complexity 1 22 0 1685 83 0 0 chr12 123843272 123843477 -20439012 - AluSc SINE Alu -32 277 73 489 191 44 73 chr12 123843556 123844568 -20437921 - SVA Other Other -798 588 457 * 604 88 12 0 chr12 123844561 123844641 -20437848 - AluSc SINE Alu -225 84 4 328 195 9 14 chr12 123844776 123844889 -20437600 - MER4A LTR ERV1 -233 431 261 447 141 141 0 chr12 123844889 123844974 -20437515 - MER4A LTR ERV1 -566 98 2 1832 111 46 7 chr12 123845001 123845281 -20437208 - MER4A-int LTR ERV1 -2 6596 6306 345 277 0 39 chr12 123845281 123845383 -20437106 - L1MC/D LINE L1 -550 5784 5696 259 188 0 0 chr12 123845998 123846046 -20436443 - L2 LINE L2 0 3313 3266 829 168 54 0 chr12 123846198 123846347 -20436142 + Tigger3(Golem) DNA MER2_type 133 289 -2740 692 277 32 28 chr12 123846375 123846624 -20435865 + MER7A DNA MER2_type 16 263 -83 360 247 22 3 chr12 123846726 123846833 -20435656 - AluS SINE Alu -230 72 2 515 272 89 30 chr12 123848177 123848379 -20434110 - MIR SINE MIR -5 257 44 316 257 103 15 chr12 123848883 123849019 -20433470 + MIR SINE MIR 112 259 -3 307 142 9 47 chr12 123849551 123849657 -20432832 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 332 286 54 9 chr12 123849821 123849933 -20432556 - MIR SINE MIR -38 224 108 468 266 27 33 chr12 123850877 123851061 -20431428 + MER53 DNA DNA 2 184 -5 219 283 17 0 chr12 123851280 123851340 -20431149 - MIR SINE MIR -90 172 112 276 296 34 0 chr12 123851413 123851501 -20430988 - MIR SINE MIR -138 124 34 330 353 21 11 chr12 123851643 123851830 -20430659 + MIR3 SINE MIR 18 206 -2 195 250 29 88 chr12 123851936 123852004 -20430485 + MIR SINE MIR 58 121 -87 1267 230 84 26 chr12 123852267 123852658 -20429831 - MER119 DNA MER1_type -1 582 169 428 279 49 46 chr12 123852663 123852970 -20429519 + L1MDa LINE L1 35 388 -6152 1832 123 39 3 chr12 123853412 123853696 -20428793 - L1MA5 LINE L1 -10 6290 5997 221 264 94 0 chr12 123853835 123853888 -20428601 + L2 LINE L2 3242 3299 -14 249 33 0 0 chr12 123853889 123853919 -20428570 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 316 299 9 28 chr12 123854071 123854178 -20428311 - MIR SINE MIR -99 163 59 937 213 29 38 chr12 123854428 123854668 -20427821 - L1ME2 LINE L1 -9 6155 5918 501 268 145 22 chr12 123854878 123855106 -20427383 + MIR SINE MIR 7 262 0 443 230 73 26 chr12 123856029 123856165 -20426324 - MIR SINE MIR -58 150 55 807 236 0 31 chr12 123856421 123856616 -20425873 + MER53 DNA DNA 1 189 0 944 249 187 42 chr12 123856854 123857357 -20425132 + MLT1G LTR MaLR 15 590 0 226 243 311 0 chr12 123857375 123857449 -20425040 + MIR SINE MIR 56 152 -110 245 321 45 27 chr12 123857449 123857561 -20424928 - MIR SINE MIR -61 147 34 497 241 143 8 chr12 123857612 123857688 -20424801 + MIR SINE MIR 112 176 -86 312 27 0 0 chr12 123857688 123857725 -20424764 + (CA)n Simple_repeat Simple_repeat 2 38 0 497 241 143 8 chr12 123857725 123857781 -20424708 + MIR SINE MIR 176 262 0 276 252 78 39 chr12 123858512 123858615 -20423874 - MIR SINE MIR -127 135 29 416 291 99 29 chr12 123858661 123858873 -20423616 + MIR SINE MIR 15 233 -29 427 301 51 26 chr12 123859297 123859453 -20423036 - MLT1I LTR MaLR -249 160 1 779 264 35 18 chr12 123859484 123859711 -20422778 - MIR SINE MIR 0 262 32 497 267 35 0 chr12 123859976 123860092 -20422397 + L2 LINE L2 3193 3312 -1 242 245 0 0 chr12 123861291 123861340 -20421149 - MIR SINE MIR -29 233 185 253 333 49 0 chr12 123861348 123861450 -20421039 - MER94 DNA DNA 0 134 28 530 254 30 10 chr12 123861473 123861620 -20420869 - MIR SINE MIR -69 193 46 223 344 78 39 chr12 123861771 123861845 -20420644 - L2 LINE L2 -4 3268 3198 462 36 0 0 chr12 123861845 123861901 -20420588 + (CA)n Simple_repeat Simple_repeat 2 57 0 223 344 78 39 chr12 123861901 123861980 -20420509 - L2 LINE L2 -74 3198 3109 590 297 18 45 chr12 123862109 123862331 -20420158 + MER102a DNA MER1_type 115 330 0 506 235 82 29 chr12 123862462 123862632 -20419857 - MER117 DNA MER1_type -10 187 9 261 228 0 0 chr12 123863310 123863389 -20419100 + (TG)n Simple_repeat Simple_repeat 1 79 0 1980 167 51 35 chr12 123863426 123863970 -20418519 - MLT2A2 LTR ERVL 0 554 1 209 357 0 32 chr12 123864043 123864197 -20418292 + (TATATG)n Simple_repeat Simple_repeat 6 154 0 222 91 0 0 chr12 123864682 123864715 -20417774 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 225 0 0 0 chr12 123864714 123864739 -20417750 + (GA)n Simple_repeat Simple_repeat 1 25 0 476 271 16 0 chr12 123864975 123865097 -20417392 + MER117 DNA MER1_type 68 191 -6 1043 218 0 0 chr12 123865205 123865379 -20417110 - MER96 DNA MER1_type -1 174 1 276 212 188 0 chr12 123865746 123865831 -20416658 + MIR SINE MIR 158 258 -4 844 177 0 21 chr12 123865840 123866317 -20416172 + (CACCAT)n Simple_repeat Simple_repeat 1 466 0 189 195 0 0 chr12 123866342 123866383 -20416106 + (CAT)n Simple_repeat Simple_repeat 2 42 0 637 226 11 0 chr12 123867106 123867283 -20415206 + GA-rich Low_complexity Low_complexity 1 179 0 1430 155 3 90 chr12 123867346 123867656 -20414833 + AluSx SINE Alu 27 309 -3 2157 110 3 7 chr12 123867656 123867955 -20414534 + AluSc SINE Alu 1 298 -11 1324 289 21 19 chr12 123867972 123868439 -20414050 - L2 LINE L2 -235 3078 2622 245 295 13 13 chr12 123868474 123868623 -20413866 + (TA)n Simple_repeat Simple_repeat 1 149 0 2356 99 23 57 chr12 123868727 123869073 -20413416 + THE1C LTR MaLR 1 334 -41 2198 101 7 13 chr12 123869073 123869381 -20413108 - AluSc SINE Alu -3 306 1 2356 99 23 57 chr12 123869381 123869418 -20413071 + THE1C LTR MaLR 334 371 -4 216 327 118 23 chr12 123869455 123869718 -20412771 - L2 LINE L2 -527 2787 2500 469 278 167 19 chr12 123870025 123870187 -20412302 + MER91A DNA MER1_type 1 186 -10 183 268 0 0 chr12 123870258 123870299 -20412190 + L2 LINE L2 3230 3270 -43 1096 147 24 0 chr12 123870485 123870655 -20411834 - MER58A DNA MER1_type -8 216 43 432 329 59 0 chr12 123870783 123870953 -20411536 - MIR SINE MIR -4 258 79 196 224 20 0 chr12 123871124 123871173 -20411316 - MIR SINE MIR -145 117 68 217 291 188 26 chr12 123871652 123871769 -20410720 - MIR SINE MIR -10 252 117 1719 232 28 30 chr12 123871838 123872303 -20410186 - Charlie4a DNA MER1_type -24 484 21 210 71 0 0 chr12 123872685 123872713 -20409776 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 382 271 34 42 chr12 123872963 123873081 -20409408 - MIR3 SINE MIR -54 154 38 429 315 66 11 chr12 123873188 123873369 -20409120 - MIR SINE MIR -28 234 44 395 339 24 6 chr12 123874447 123874612 -20407877 - MIR SINE MIR -49 213 46 276 342 132 7 chr12 123874848 123875000 -20407489 - L3 LINE CR1 -22 1555 1385 277 317 16 21 chr12 123875125 123875311 -20407178 + L1MC4a LINE L1 5713 5897 -1911 633 174 0 0 chr12 123875794 123875926 -20406563 + CT-rich Low_complexity Low_complexity 1 132 0 2412 91 0 0 chr12 123875987 123876283 -20406206 + AluY SINE Alu 5 300 -11 11109 69 6 4 chr12 123876283 123878465 -20404024 + L1PA7 LINE L1 3979 6154 0 236 227 14 49 chr12 123878950 123879041 -20403448 - L1P4 LINE L1 -396 5769 5681 211 225 100 79 chr12 123879541 123879681 -20402808 + MIR3 SINE MIR 19 169 -39 1074 333 55 31 chr12 123879789 123880297 -20402192 + MLT1K LTR MaLR 3 522 -66 1012 170 37 32 chr12 123880383 123880571 -20401918 + MER5A DNA MER1_type 1 189 0 1113 277 69 29 chr12 123881247 123881763 -20400726 - L2 LINE L2 0 3313 2766 186 43 0 0 chr12 123881982 123882005 -20400484 + (CA)n Simple_repeat Simple_repeat 1 23 0 598 158 89 0 chr12 123882768 123882869 -20399620 - MER81 DNA DNA -1 113 4 246 62 0 0 chr12 123882983 123883015 -20399474 + (TC)n Simple_repeat Simple_repeat 2 33 0 191 333 10 20 chr12 123883205 123883307 -20399182 - MIR SINE MIR -130 132 32 296 24 24 0 chr12 123883557 123883598 -20398891 + (TG)n Simple_repeat Simple_repeat 2 43 0 242 234 6 53 chr12 123884122 123884232 -20398257 - MIR SINE MIR -67 195 94 2082 143 0 13 chr12 123884387 123884701 -20397788 + AluSx SINE Alu 3 312 0 447 248 10 10 chr12 123884714 123884815 -20397674 - MER5A DNA MER1_type -80 109 9 1053 302 82 16 chr12 123884816 123885193 -20397296 - MLT1I LTR MaLR -7 402 1 271 200 265 35 chr12 123885491 123885661 -20396828 - L1ME4a LINE L1 -198 5923 5715 2911 153 22 46 chr12 123885670 123886193 -20396296 - L1MA8 LINE L1 -172 6119 5610 2370 75 14 0 chr12 123886193 123886487 -20396002 - AluSp SINE Alu -15 298 1 2911 153 22 46 chr12 123886487 123886545 -20395944 - L1MA8 LINE L1 -681 5610 5552 484 303 90 27 chr12 123886581 123886878 -20395611 - L1ME4a LINE L1 -437 5684 5371 180 0 0 0 chr12 123887061 123887081 -20395408 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 379 289 31 19 chr12 123887117 123887276 -20395213 + L1ME LINE L1 5567 5727 -394 646 114 42 12 chr12 123887418 123887584 -20394905 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 224 208 0 14 chr12 123887615 123887687 -20394802 + (TA)n Simple_repeat Simple_repeat 1 71 0 336 191 0 0 chr12 123887696 123887785 -20394704 + GA-rich Low_complexity Low_complexity 2 90 0 351 317 8 8 chr12 123887787 123887910 -20394579 - MER5B DNA MER1_type 0 178 56 274 353 96 18 chr12 123888020 123888333 -20394156 + L2 LINE L2 2753 3089 -224 220 289 0 0 chr12 123888743 123888795 -20393694 - L2 LINE L2 -17 3296 3245 286 280 93 87 chr12 123889248 123889389 -20393100 - L2 LINE L2 -338 2976 2837 583 282 57 86 chr12 123889389 123889740 -20392749 + MER102b DNA MER1_type 1 341 0 286 280 93 87 chr12 123889740 123889887 -20392602 - L2 LINE L2 -477 2837 2686 1207 236 115 56 chr12 123889893 123889959 -20392530 + L1ME3A LINE L1 5667 5728 -442 2228 89 0 20 chr12 123889959 123890273 -20392216 + AluSg SINE Alu 5 310 0 1207 236 115 56 chr12 123890273 123890651 -20391838 + L1ME3A LINE L1 5728 6137 -33 2060 136 141 13 chr12 123892131 123892506 -20389983 + MSTA LTR MaLR 6 428 0 184 206 0 0 chr12 123892689 123892723 -20389766 + L2 LINE L2 3190 3223 -90 225 94 0 0 chr12 123892800 123892832 -20389657 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 573 338 18 0 chr12 123892988 123893210 -20389279 + MIR SINE MIR 27 252 -10 695 95 35 52 chr12 123893275 123893391 -20389098 + FLAM_C SINE Alu 13 126 -17 315 71 0 0 chr12 123893391 123893433 -20389056 + (CA)n Simple_repeat Simple_repeat 1 42 0 452 140 11 21 chr12 123893503 123893596 -20388893 - L1MA10 LINE L1 -3 6331 6240 300 258 0 0 chr12 123893741 123893807 -20388682 + MER5A DNA MER1_type 118 183 -6 287 278 22 0 chr12 123893826 123893916 -20388573 - MIR SINE MIR -122 140 49 331 246 44 18 chr12 123893940 123894054 -20388435 + MER5A DNA MER1_type 45 161 -28 3947 63 37 2 chr12 123894615 123895124 -20387365 - L1PA8 LINE L1 -3 6169 5643 1909 162 0 13 chr12 123895284 123895586 -20386903 - AluSx SINE Alu -14 298 1 764 73 0 57 chr12 123896054 123896177 -20386312 - L1PA7 LINE L1 0 6154 6039 312 231 31 88 chr12 123896651 123896811 -20385678 - MIR SINE MIR -1 261 111 865 211 127 9 chr12 123896942 123897155 -20385334 - MLT1F LTR MaLR -69 473 236 233 279 25 13 chr12 123897217 123897296 -20385193 + GA-rich Low_complexity Low_complexity 2 81 0 519 254 33 8 chr12 123897305 123897427 -20385062 - MLT1F LTR MaLR -375 167 43 907 292 59 31 chr12 123897751 123898207 -20384282 + LTR33 LTR ERVL 47 515 -6 28 0 0 0 chr12 123899242 123899270 -20383219 + AT_rich Low_complexity Low_complexity 1 28 0 307 327 16 64 chr12 123899553 123899804 -20382685 + L1ME4a LINE L1 5843 6081 -40 501 283 39 29 chr12 123899812 123900017 -20382472 - MIR SINE MIR -2 260 55 2244 115 0 0 chr12 123900019 123900315 -20382174 + AluSc SINE Alu 1 296 -13 1837 160 40 0 chr12 123900801 123901127 -20381362 + AluSx SINE Alu 1 338 0 1115 106 0 6 chr12 123901127 123901306 -20381183 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 210 259 0 0 chr12 123902347 123902405 -20380084 + (TTA)n Simple_repeat Simple_repeat 3 60 0 243 352 9 19 chr12 123902470 123902578 -20379911 + L2 LINE L2 3145 3251 -21 670 167 20 26 chr12 123902588 123903101 -20379388 + GA-rich Low_complexity Low_complexity 1 510 0 321 336 121 0 chr12 123903151 123903291 -20379198 + MIR SINE MIR 99 255 -7 1806 205 20 23 chr12 123904702 123905092 -20377397 + MLT1B LTR MaLR 2 390 0 835 220 17 6 chr12 123905157 123905330 -20377159 - MER58A DNA MER1_type -15 209 35 2459 51 0 0 chr12 123905594 123905886 -20376603 + AluY SINE Alu 19 310 -1 33 43 0 0 chr12 123905887 123905934 -20376555 + AT_rich Low_complexity Low_complexity 1 47 0 462 221 50 85 chr12 123906040 123906178 -20376311 + MIR SINE MIR 64 194 -68 1719 56 73 4 chr12 123906178 123906410 -20376079 + L1PA10 LINE L1 5911 6158 -10 462 221 50 85 chr12 123906410 123906470 -20376019 + MIR SINE MIR 194 255 -7 716 246 48 52 chr12 123907081 123907333 -20375156 - MIR SINE MIR 0 262 12 676 182 113 102 chr12 123907419 123907639 -20374850 - MER58D DNA MER1_type -2034 386 161 1908 123 145 22 chr12 123907639 123907963 -20374526 - THE1B LTR MaLR 0 364 1 676 182 113 102 chr12 123907963 123908017 -20374472 - MER58D DNA MER1_type -2259 161 109 298 295 28 5 chr12 123908163 123908270 -20374219 + MIR SINE MIR 7 117 -91 1010 217 29 5 chr12 123908272 123908479 -20374010 + MER20 DNA MER1_type 1 212 -7 209 281 123 26 chr12 123908493 123908607 -20373882 + MIR SINE MIR 117 241 -21 393 208 19 57 chr12 123908613 123908719 -20373770 - MER58D DNA MER1_type -257 129 28 190 311 57 25 chr12 123909323 123909445 -20373044 - MIR SINE MIR -109 153 28 1300 269 58 24 chr12 123909573 123910224 -20372265 - L1M1 LINE L1 -4166 3400 2628 62 0 0 0 chr12 123910254 123910316 -20372173 + GC_rich Low_complexity Low_complexity 1 62 0 284 162 0 0 chr12 123910432 123910500 -20371989 + G-rich Low_complexity Low_complexity 1 68 0 22 56 0 0 chr12 123910501 123910537 -20371952 + GC_rich Low_complexity Low_complexity 1 36 0 221 336 14 0 chr12 123911323 123911466 -20371023 + (TG)n Simple_repeat Simple_repeat 2 146 0 270 299 11 17 chr12 123911523 123911700 -20370789 + T-rich Low_complexity Low_complexity 1 176 0 * 478 290 11 0 chr12 123911580 123911756 -20370733 + (TG)n Simple_repeat Simple_repeat 2 179 0 547 220 66 29 chr12 123912817 123913016 -20369473 - MIR SINE MIR -3 259 50 276 358 8 0 chr12 123913219 123913339 -20369150 - MIR SINE MIR -50 212 92 525 190 43 79 chr12 123913430 123913634 -20368855 - MER58 DNA MER1_type -15 2405 5 228 256 17 51 chr12 123914500 123914617 -20367872 + MIR SINE MIR 31 143 -65 2297 116 0 0 chr12 123914971 123915273 -20367216 + AluSc SINE Alu 1 302 -7 720 261 15 5 chr12 123915429 123915628 -20366861 + MIR SINE MIR 8 208 -54 540 287 85 78 chr12 123916789 123917096 -20365393 + LTR33A LTR ERVL 2 310 -213 1155 252 18 53 chr12 123917288 123917625 -20364864 - LTR16A LTR ERVL 0 450 126 696 298 66 60 chr12 123918460 123918826 -20363663 - MLT1J LTR MaLR -143 368 1 222 322 92 0 chr12 123918834 123918921 -20363568 - MIR SINE MIR -51 211 117 360 0 0 0 chr12 123919587 123919627 -20362862 + (TG)n Simple_repeat Simple_repeat 2 41 0 490 263 8 8 chr12 123919945 123920063 -20362426 + MLT1K LTR MaLR 166 283 -305 945 249 73 75 chr12 123920164 123920522 -20361967 + LTR16C LTR ERVL 133 489 -2 451 252 8 55 chr12 123920538 123920665 -20361824 + MLT1K LTR MaLR 355 475 -113 312 246 59 17 chr12 123921164 123921282 -20361207 - MIR SINE MIR -34 228 106 362 326 58 11 chr12 123921301 123921491 -20360998 + MIR SINE MIR 39 237 -25 225 0 0 0 chr12 123921500 123921525 -20360964 + (CAT)n Simple_repeat Simple_repeat 2 26 0 497 283 46 17 chr12 123921647 123921820 -20360669 - MIR SINE MIR -74 188 11 201 319 62 0 chr12 123922458 123922571 -20359918 + MIR SINE MIR 143 262 0 271 283 121 10 chr12 123922649 123922748 -20359741 - L2 LINE L2 -15 3298 3189 409 278 0 0 chr12 123922748 123922845 -20359644 + MER3 DNA MER1_type 1 97 -112 632 146 83 42 chr12 123922865 123923009 -20359480 + MER3 DNA MER1_type 59 208 -1 295 163 0 0 chr12 123922967 123923016 -20359473 - MER3 DNA MER1_type -119 90 42 * 547 300 115 36 chr12 123923150 123923563 -20358926 - L2 LINE L2 -267 3046 2594 253 278 58 52 chr12 123924625 123924798 -20357691 + MIR SINE MIR 81 254 -8 2242 117 0 0 chr12 123924835 123925134 -20357355 + AluSx SINE Alu 1 299 -13 364 344 0 0 chr12 123925329 123925460 -20357029 + MIR SINE MIR 45 175 -87 990 258 30 63 chr12 123925683 123926082 -20356407 - L2 LINE L2 -3 3310 2925 628 299 39 30 chr12 123926967 123927198 -20355291 - MIR SINE MIR -21 241 9 1006 216 0 47 chr12 123927243 123927475 -20355014 - MER58A DNA MER1_type -3 221 1 201 154 0 0 chr12 123927629 123927668 -20354821 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 835 236 74 0 chr12 123927717 123927946 -20354543 - LTR16C LTR ERVL -2 489 244 1029 215 51 0 chr12 123928088 123928283 -20354206 + MER58A DNA MER1_type 20 224 0 2602 176 38 4 chr12 123928447 123928948 -20353541 - L1MB1 LINE L1 0 6168 5651 2169 146 52 13 chr12 123928949 123929306 -20353183 + L1MC/D LINE L1 5110 5498 -715 234 0 0 0 chr12 123929306 123929332 -20353157 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2169 146 52 13 chr12 123929332 123929525 -20352964 + L1MC/D LINE L1 5498 5682 -531 1218 159 10 24 chr12 123929583 123929791 -20352698 - AluJo SINE Alu -22 290 86 2139 135 39 34 chr12 123929952 123930308 -20352181 - THE1B LTR MaLR 0 364 7 2024 156 0 9 chr12 123930594 123930909 -20351580 + AluJb SINE Alu 1 312 0 207 100 0 0 chr12 123930928 123930958 -20351531 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 470 314 93 10 chr12 123931312 123931506 -20350983 + MIR SINE MIR 21 230 -32 851 288 60 7 chr12 123931530 123931815 -20350674 - MLT1L LTR MaLR 0 615 316 282 29 0 0 chr12 123932733 123932768 -20349721 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 423 290 25 19 chr12 123932768 123932930 -20349559 - L2 LINE L2 -13 3300 3138 442 284 78 28 chr12 123932986 123933012 -20349477 - MIR SINE MIR -5 257 234 1752 213 60 23 chr12 123933012 123933411 -20349078 + MLT2D LTR ERVL 1 414 0 442 284 78 28 chr12 123933411 123933602 -20348887 - MIR SINE MIR -28 234 29 458 307 14 42 chr12 123934000 123934215 -20348274 + MIR SINE MIR 36 244 -18 2846 81 0 18 chr12 123934216 123934599 -20347890 + L1PB1 LINE L1 5774 6149 -2 318 0 15 75 chr12 123934620 123934687 -20347802 + (TA)n Simple_repeat Simple_repeat 1 63 0 258 283 0 0 chr12 123935745 123935815 -20346674 - MIR SINE MIR -62 146 85 646 175 16 20 chr12 123935830 123936085 -20346404 + GA-rich Low_complexity Low_complexity 1 254 0 507 318 110 25 chr12 123936108 123936435 -20346054 - MLT1I LTR MaLR 0 409 55 239 224 41 128 chr12 123936896 123937007 -20345482 + MER113 DNA MER1_type? 24 112 -409 2081 161 46 0 chr12 123937007 123937379 -20345110 - MLT1B LTR MaLR -1 389 1 239 224 41 128 chr12 123937379 123937463 -20345026 + MER113 DNA MER1_type? 112 202 -319 215 192 77 19 chr12 123937463 123937515 -20344974 + L2 LINE L2 3257 3311 -2 535 283 75 9 chr12 123937526 123937752 -20344737 + MER113 DNA MER1_type? 204 444 -77 222 359 0 34 chr12 123937945 123938062 -20344427 + L2 LINE L2 2900 3012 -260 2265 90 0 46 chr12 123938085 123938408 -20344081 + AluY SINE Alu 1 308 -3 226 319 14 0 chr12 123938869 123938938 -20343551 + MIR SINE MIR 2 71 -191 1272 257 41 57 chr12 123939158 123939350 -20343139 - L2 LINE L2 -188 3125 2932 1487 192 51 51 chr12 123939350 123939604 -20342885 + MLT1B LTR MaLR 1 257 -133 2096 120 21 0 chr12 123939604 123939888 -20342601 + AluSc SINE Alu 1 290 -19 1487 192 51 51 chr12 123939888 123940023 -20342466 + MLT1B LTR MaLR 256 390 0 1272 257 41 57 chr12 123940023 123940518 -20341971 - L2 LINE L2 -381 2932 2425 899 207 39 6 chr12 123940520 123940699 -20341790 + MER20 DNA MER1_type 32 216 -3 615 230 73 17 chr12 123940803 123940981 -20341508 + MIR SINE MIR 75 262 0 186 343 27 0 chr12 123940997 123941070 -20341419 + L2 LINE L2 3229 3303 -10 537 119 30 0 chr12 123941107 123941208 -20341281 + CT-rich Low_complexity Low_complexity 1 104 0 2201 110 13 16 chr12 123941208 123941516 -20340973 - AluSg SINE Alu -3 307 1 218 315 68 0 chr12 123942388 123942461 -20340028 + L2 LINE L2 3234 3311 -2 234 0 0 0 chr12 123942659 123942685 -20339804 + (CA)n Simple_repeat Simple_repeat 2 27 0 359 284 19 52 chr12 123942932 123943087 -20339402 - MLT1L LTR MaLR -329 286 137 1732 191 0 7 chr12 123943096 123943395 -20339094 - AluJb SINE Alu -15 297 1 300 291 0 0 chr12 123943584 123943663 -20338826 + (CA)n Simple_repeat Simple_repeat 2 80 0 44114 29 23 1 chr12 123943879 123949900 -20332589 + L1PA3 LINE L1 1 6155 0 910 191 13 50 chr12 123950152 123950531 -20331958 - MER63B DNA MER1_type -2 434 6 383 286 36 0 chr12 123950643 123950755 -20331734 + MIR SINE MIR 141 256 -6 337 214 0 56 chr12 123950831 123950920 -20331569 + MLT1L LTR MaLR 3 86 -529 1633 185 29 26 chr12 123951106 123951446 -20331043 - MLT1A1 LTR MaLR -13 352 12 3233 129 31 2 chr12 123951591 123952250 -20330239 - L1MA8 LINE L1 -522 5769 5095 2754 150 4 47 chr12 123952250 123952773 -20329716 + L1MA8 LINE L1 5783 6287 -4 291 213 40 13 chr12 123952787 123952862 -20329627 + MLT1J LTR MaLR 435 511 0 371 274 222 0 chr12 123952946 123953063 -20329426 + MER5A DNA MER1_type 18 160 -29 180 0 0 0 chr12 123953203 123953223 -20329266 + (T)n Simple_repeat Simple_repeat 1 20 0 268 356 79 0 chr12 123954153 123954254 -20328235 + L2 LINE L2 3187 3295 -18 623 284 6 12 chr12 123954277 123954439 -20328050 - MIR SINE MIR -76 186 26 465 313 8 8 chr12 123954888 123955022 -20327467 + MER5A DNA MER1_type 55 188 -1 2300 143 6 26 chr12 123955305 123955648 -20326841 - MER1B DNA MER1_type -1 336 1 224 283 0 17 chr12 123955780 123955840 -20326649 + GA-rich Low_complexity Low_complexity 3 61 0 333 68 0 0 chr12 123955884 123955928 -20326561 + (CA)n Simple_repeat Simple_repeat 2 45 0 228 239 141 0 chr12 123956007 123956078 -20326411 + MIR SINE MIR 84 164 -98 379 245 0 20 chr12 123956583 123956681 -20325808 + L2 LINE L2 3202 3297 -16 255 189 108 14 chr12 123956681 123956755 -20325734 + L1MC3 LINE L1 7009 7089 -696 277 317 20 10 chr12 123956862 123956963 -20325526 - L2 LINE L2 -2 3311 3210 613 311 105 9 chr12 123957425 123957644 -20324845 + MIR SINE MIR 13 252 -10 2291 115 0 0 chr12 123958607 123958919 -20323570 + AluSx SINE Alu 1 312 0 180 256 0 0 chr12 123959158 123959197 -20323292 - L2 LINE L2 -3 3310 3272 562 216 173 0 chr12 123959429 123959568 -20322921 - MER5A DNA MER1_type -6 183 21 971 298 57 52 chr12 123960460 123960937 -20321552 + L2 LINE L2 2835 3313 0 331 307 39 78 chr12 123960938 123961143 -20321346 + MLT1K LTR MaLR 185 381 -207 1004 232 40 55 chr12 123961413 123961845 -20320644 + MLT1D LTR MaLR 44 505 0 564 329 31 11 chr12 123961917 123962142 -20320347 + MIR SINE MIR 18 243 -19 190 302 43 72 chr12 123962291 123962430 -20320059 - MER5A DNA MER1_type 0 189 55 4849 97 6 1 chr12 123963155 123963802 -20318687 - L1PB2 LINE L1 0 6151 5502 251 306 208 7 chr12 123964143 123964287 -20318202 + MIR SINE MIR 16 188 -74 367 183 0 28 chr12 123965127 123965198 -20317291 - L2 LINE L2 -59 3254 3186 262 345 69 17 chr12 123965296 123965412 -20317077 - MER91C DNA MER1_type -18 122 1 816 178 0 0 chr12 123965747 123965876 -20316613 - FLAM_A SINE Alu -2 131 3 204 139 28 0 chr12 123965927 123965963 -20316526 + CT-rich Low_complexity Low_complexity 1 37 0 779 283 83 69 chr12 123966259 123966694 -20315795 - MLT1J LTR MaLR 0 511 71 335 256 64 45 chr12 123967109 123967265 -20315224 - MIR SINE MIR -71 191 33 218 229 0 16 chr12 123967345 123967406 -20315083 + T-rich Low_complexity Low_complexity 6 65 0 232 287 107 16 chr12 123967454 123967576 -20314913 + L2 LINE L2 3117 3249 -23 608 304 53 19 chr12 123967991 123968198 -20314291 - MIR SINE MIR -44 218 5 1834 194 0 0 chr12 123968656 123968960 -20313529 - AluJo SINE Alu -8 304 1 293 290 84 4 chr12 123969377 123969539 -20312950 + MIR SINE MIR 69 248 -14 257 300 43 0 chr12 123970541 123970611 -20311878 + MIR3 SINE MIR 83 155 -53 432 322 0 20 chr12 123970666 123970815 -20311674 - MER117 DNA MER1_type -50 147 2 252 0 0 0 chr12 123971252 123971280 -20311209 + (T)n Simple_repeat Simple_repeat 1 28 0 215 302 0 0 chr12 123971891 123971944 -20310545 + L2 LINE L2 3199 3251 -21 220 309 0 0 chr12 123971958 123972013 -20310476 + L2 LINE L2 2608 2662 -652 204 97 0 0 chr12 123972036 123972067 -20310422 + (ATG)n Simple_repeat Simple_repeat 2 32 0 487 262 181 5 chr12 123972089 123972299 -20310190 - MIR SINE MIR -15 247 1 289 261 23 23 chr12 123972531 123972619 -20309870 + MIR SINE MIR 32 119 -89 252 208 0 0 chr12 123973289 123973337 -20309152 + L2 LINE L2 3265 3312 -1 594 283 39 104 chr12 123973514 123973878 -20308611 - MLT1I LTR MaLR -3 406 67 3259 194 23 22 chr12 123974426 123975182 -20307307 + L1MA10 LINE L1 4537 5280 -866 1075 107 17 0 chr12 123975194 123975259 -20307230 + (GAAA)n Simple_repeat Simple_repeat 1 246 0 1075 107 17 0 chr12 123975259 123975436 -20307053 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4699 185 55 29 chr12 123975539 123975821 -20306668 + L1MA10 LINE L1 5321 5594 -740 1846 164 7 0 chr12 123975821 123976133 -20306356 + AluSx SINE Alu 1 314 0 4699 185 55 29 chr12 123976133 123976836 -20305653 + L1MA10 LINE L1 5594 6332 -2 1968 138 7 0 chr12 123977071 123977379 -20305110 - AluSx SINE Alu 0 310 1 5370 50 3 2 chr12 123977509 123978130 -20304359 + L1PA7 LINE L1 5514 6135 -19 934 200 56 6 chr12 123978622 123978802 -20303687 + MER5A DNA MER1_type 1 189 0 491 281 138 24 chr12 123978813 123978980 -20303509 + MER5A DNA MER1_type 4 189 0 181 273 0 0 chr12 123978988 123979032 -20303457 + MER5B DNA MER1_type 1 44 -134 * 474 235 20 10 chr12 123979029 123979127 -20303362 - MER5B DNA MER1_type -77 101 3 2091 141 0 3 chr12 123980435 123980747 -20301742 - AluSx SINE Alu -1 311 1 262 120 100 20 chr12 123981498 123981548 -20300941 + MER117 DNA MER1_type 61 114 -83 882 149 6 11 chr12 123981619 123981793 -20300696 + GA-rich Low_complexity Low_complexity 1 173 0 707 178 20 16 chr12 123981816 123982346 -20300143 + GA-rich Low_complexity Low_complexity 1 531 0 694 259 17 81 chr12 123982588 123982722 -20299767 + L1MC4 LINE L1 7574 7680 -362 1522 153 4 12 chr12 123982722 123982964 -20299525 - AluJo SINE Alu -67 245 6 694 259 17 81 chr12 123982964 123983126 -20299363 + L1MC4 LINE L1 7680 7851 -191 422 327 50 15 chr12 123984654 123984856 -20297633 + MIR SINE MIR 40 248 -14 1914 153 0 13 chr12 123985080 123985381 -20297108 - AluSx SINE Alu -15 297 1 766 281 20 29 chr12 123985384 123985630 -20296859 - MIR SINE MIR -10 252 9 881 249 0 0 chr12 123985737 123985926 -20296563 - MER5A DNA MER1_type 0 189 1 228 97 0 0 chr12 123986067 123986098 -20296391 + HSMAR2 DNA Mariner 9 39 -1263 2943 68 2 51 chr12 123986270 123986664 -20295825 - THE1C LTR MaLR 0 375 1 1054 188 21 13 chr12 123986878 123987112 -20295377 - L1 LINE L1 -1512 4634 4399 475 228 85 43 chr12 123987112 123987323 -20295166 - L1M4 LINE L1 -1624 4522 4303 * 4412 179 40 16 chr12 123987315 123987401 -20295088 - L1 LINE L1 -1737 4409 4327 1466 172 46 53 chr12 123987401 123987704 -20294785 - AluJo SINE Alu -9 303 3 4412 179 40 16 chr12 123987704 123988507 -20293982 - L1 LINE L1 -1819 4327 3498 1410 200 17 0 chr12 123988510 123988805 -20293684 + L1MA10 LINE L1 5076 5375 -771 7365 146 13 4 chr12 123988817 123989961 -20292528 + HSMAR2 DNA Mariner 10 1163 -139 256 299 18 44 chr12 123989969 123990226 -20292263 + CT-rich Low_complexity Low_complexity 1 250 0 777 73 0 65 chr12 123990411 123990535 -20291954 - L1PA7 LINE L1 0 6154 6039 1485 122 7 48 chr12 123990775 123991046 -20291443 + HSMAR2 DNA Mariner 1042 1301 -1 2230 188 77 10 chr12 123991048 123991761 -20290728 + L1MA10 LINE L1 5381 6125 -58 300 27 0 0 chr12 123991761 123991798 -20290691 + (CA)n Simple_repeat Simple_repeat 2 38 0 2230 188 77 10 chr12 123991798 123991839 -20290650 + L1MA10 LINE L1 6125 6162 -21 394 350 0 0 chr12 123992806 123992926 -20289563 + MER5B DNA MER1_type 1 120 -58 904 195 6 0 chr12 123993339 123993501 -20288988 + AluJb SINE Alu 145 304 -8 1058 166 28 0 chr12 123993978 123994159 -20288330 - MER5A DNA MER1_type -3 186 1 310 282 14 43 chr12 123994186 123994409 -20288080 + GA-rich Low_complexity Low_complexity 1 216 0 256 289 9 35 chr12 123995445 123995559 -20286930 - MIR3 SINE MIR -16 192 82 2102 165 17 0 chr12 123995797 123996142 -20286347 - L1PA16 LINE L1 -7 6159 5809 366 281 75 14 chr12 123996257 123996403 -20286086 - MIR SINE MIR -20 242 88 690 231 111 20 chr12 123996567 123996766 -20285723 - MER58A DNA MER1_type 0 224 8 316 297 59 8 chr12 123996924 123997042 -20285447 - MER5A DNA MER1_type 0 189 66 342 67 0 0 chr12 123997042 123997087 -20285402 + (A)n Simple_repeat Simple_repeat 1 45 0 245 95 0 24 chr12 123997128 123997170 -20285319 + (GAA)n Simple_repeat Simple_repeat 2 42 0 210 71 0 0 chr12 123997203 123997231 -20285258 + (A)n Simple_repeat Simple_repeat 1 28 0 3638 128 8 85 chr12 123998417 123999095 -20283394 - L1MA9 LINE L1 -398 5914 5275 2228 95 3 0 chr12 123999095 123999399 -20283090 - AluSq SINE Alu 0 305 1 3638 128 8 85 chr12 123999399 123999443 -20283046 - L1MA9 LINE L1 -1037 5275 5229 293 278 130 72 chr12 123999780 124001000 -20281489 + L1 LINE L1 3681 4934 -1212 434 248 131 26 chr12 124001395 124001548 -20280941 + MIR SINE MIR 30 198 -64 383 232 80 58 chr12 124001570 124001622 -20280867 + MIR SINE MIR 113 162 -100 2364 121 3 24 chr12 124001622 124001994 -20280495 - THE1B LTR MaLR 0 364 1 383 232 80 58 chr12 124001994 124002079 -20280410 + MIR SINE MIR 162 253 -9 261 0 0 0 chr12 124003720 124003749 -20278740 + (CA)n Simple_repeat Simple_repeat 2 30 0 185 0 40 0 chr12 124003749 124003774 -20278715 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2739 93 3 0 chr12 124004037 124004391 -20278098 + THE1A LTR MaLR 1 355 0 12024 95 2 1 chr12 124004391 124005970 -20276519 + THE1A-int LTR MaLR 1 1580 0 2708 96 3 0 chr12 124005971 124006324 -20276165 + THE1A LTR MaLR 2 355 0 698 283 91 19 chr12 124006590 124006897 -20275592 - L3 LINE CR1 -6 1571 1243 237 308 45 32 chr12 124006900 124007056 -20275433 - MIR SINE MIR -60 202 45 214 267 18 40 chr12 124007203 124007326 -20275163 + GA-rich Low_complexity Low_complexity 1 120 0 1616 197 16 7 chr12 124007730 124008039 -20274450 - AluJb SINE Alu 0 312 1 492 235 45 56 chr12 124008638 124008817 -20273672 + L1ME4a LINE L1 5943 6119 -2 1298 283 85 12 chr12 124009819 124010303 -20272186 + LTR33 LTR ERVL 1 519 -2 457 286 121 18 chr12 124010305 124010529 -20271960 + MIR SINE MIR 8 254 -8 1218 177 87 32 chr12 124011126 124011403 -20271086 + AluJo SINE Alu 1 292 -20 2071 108 3 11 chr12 124011405 124011711 -20270778 + AluSc SINE Alu 1 304 0 848 277 109 43 chr12 124011897 124012319 -20270170 - MLT1J2 LTR MaLR 0 450 1 951 137 0 16 chr12 124012674 124012857 -20269632 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 532 224 0 0 chr12 124012936 124013034 -20269455 + MER81 DNA DNA 17 114 0 698 261 20 10 chr12 124013054 124013257 -20269232 + MIR SINE MIR 49 253 -9 437 222 0 0 chr12 124014054 124014144 -20268345 - MIR SINE MIR -124 138 49 985 216 9 18 chr12 124014284 124014502 -20267987 - MER20 DNA MER1_type 0 219 4 1847 144 10 28 chr12 124014543 124014834 -20267655 + AluJo SINE Alu 4 289 -23 29 0 0 0 chr12 124014834 124014863 -20267626 + AT_rich Low_complexity Low_complexity 1 29 0 502 250 122 20 chr12 124014863 124015059 -20267430 - MIR SINE MIR 0 262 47 660 262 19 2 chr12 124016082 124016452 -20266037 - L1ME3A LINE L1 -4 6160 5728 757 276 80 11 chr12 124016772 124017036 -20265453 - L1MC4a LINE L1 -1909 5899 5618 452 283 107 0 chr12 124017391 124017550 -20264939 - MIR SINE MIR -4 258 83 233 375 0 10 chr12 124017575 124017671 -20264818 - L2 LINE L2 -62 3210 3116 342 235 12 0 chr12 124017934 124018019 -20264470 - MIR SINE MIR -78 130 45 212 234 0 21 chr12 124018920 124018967 -20263522 + GA-rich Low_complexity Low_complexity 2 47 0 182 118 29 0 chr12 124019537 124019571 -20262918 + T-rich Low_complexity Low_complexity 2 36 0 512 299 76 49 chr12 124019644 124020052 -20262437 - MLT1L LTR MaLR -4 611 193 609 343 4 4 chr12 124020458 124020697 -20261792 + MIR SINE MIR 12 250 -12 948 216 56 0 chr12 124021389 124021602 -20260887 + MIR SINE MIR 14 238 -24 260 278 87 24 chr12 124021721 124021847 -20260642 - MIR SINE MIR -120 142 9 216 0 0 0 chr12 124022556 124022580 -20259909 + (A)n Simple_repeat Simple_repeat 1 24 0 1595 178 45 14 chr12 124022793 124023079 -20259410 + AluJo SINE Alu 1 295 -17 260 261 149 50 chr12 124023083 124023244 -20259245 - MIR SINE MIR -85 177 1 444 299 47 31 chr12 124023345 124023604 -20258885 - MIR SINE MIR 0 262 7 1020 253 117 5 chr12 124023948 124024343 -20258146 + L2 LINE L2 2301 2739 -575 637 260 121 51 chr12 124024349 124024722 -20257767 + L2 LINE L2 2915 3313 0 708 192 126 28 chr12 124024787 124024916 -20257573 + MER3 DNA MER1_type 5 120 -89 502 81 27 0 chr12 124024916 124024990 -20257499 - L1MC2 LINE L1 0 6344 6269 708 192 126 28 chr12 124024990 124025002 -20257487 + MER3 DNA MER1_type 120 129 -80 198 71 0 0 chr12 124025002 124025030 -20257459 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 708 192 126 28 chr12 124025030 124025069 -20257420 + MER3 DNA MER1_type 129 204 -5 228 35 0 0 chr12 124025576 124025605 -20256884 + (TC)n Simple_repeat Simple_repeat 2 30 0 219 189 0 19 chr12 124025605 124025658 -20256831 + (TA)n Simple_repeat Simple_repeat 2 53 0 218 203 0 16 chr12 124025659 124025723 -20256766 + (CA)n Simple_repeat Simple_repeat 1 63 0 365 116 35 81 chr12 124026380 124026434 -20256055 - LTR50 LTR ERVL -2 793 743 2301 131 120 5 chr12 124026434 124026817 -20255672 + MSTA LTR MaLR 1 427 -1 365 116 35 81 chr12 124026817 124026848 -20255641 - LTR50 LTR ERVL -52 743 712 300 327 45 30 chr12 124027028 124027227 -20255262 - LTR50 LTR ERVL -123 672 471 329 235 0 0 chr12 124027400 124027468 -20255021 - LTR50 LTR ERVL -715 80 13 395 314 88 5 chr12 124027469 124027673 -20254816 - L1ME LINE L1 -325 5796 5576 390 284 47 32 chr12 124027933 124028123 -20254366 + MIR SINE MIR 8 200 -62 318 336 34 8 chr12 124028756 124028875 -20253614 + L1MA9 LINE L1 1695 1816 -5680 2402 257 51 51 chr12 124028969 124030761 -20251728 + L1MA9 LINE L1 2017 3520 -4045 * 4092 194 22 59 chr12 124030733 124032416 -20250073 + L1MA9 LINE L1 5662 7279 -452 206 362 0 0 chr12 124032524 124032593 -20249896 + L2 LINE L2 3170 3238 -34 315 0 0 0 chr12 124032631 124032666 -20249823 + (TGAG)n Simple_repeat Simple_repeat 3 37 0 423 56 0 0 chr12 124032667 124032721 -20249768 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 219 304 11 22 chr12 124033046 124033138 -20249351 + GA-rich Low_complexity Low_complexity 3 93 0 421 252 126 8 chr12 124033195 124033314 -20249175 - L2 LINE L2 0 3313 3181 440 18 18 0 chr12 124033579 124033636 -20248853 + (CA)n Simple_repeat Simple_repeat 1 58 0 340 294 162 49 chr12 124034093 124034313 -20248176 + L2 LINE L2 2491 2685 -587 2874 89 70 9 chr12 124034313 124034740 -20247749 - L1PA10 LINE L1 0 6168 5716 340 294 162 49 chr12 124034740 124034953 -20247536 + L2 LINE L2 2685 2984 -288 2234 219 70 33 chr12 124034953 124035525 -20246964 - MLT1E LTR MaLR 0 593 1 340 294 162 49 chr12 124035525 124035601 -20246888 + L2 LINE L2 2984 3050 -222 200 194 0 0 chr12 124036153 124036189 -20246300 - L2 LINE L2 -21 3251 3216 302 307 127 21 chr12 124036277 124036466 -20246023 + MER63A DNA MER1_type 1 209 -1 185 204 20 20 chr12 124036589 124036638 -20245851 + L2 LINE L2 3213 3261 -11 3842 132 8 13 chr12 124037169 124037785 -20244704 + L1MA4 LINE L1 5679 6291 -9 330 340 10 65 chr12 124037799 124037999 -20244490 - L2 LINE L2 -78 3194 3006 1474 252 128 19 chr12 124038113 124038590 -20243899 - MLT1H1 LTR MaLR -7 548 20 891 239 21 62 chr12 124038627 124038916 -20243573 - L1MD2 LINE L1 -42 6317 6041 2015 127 14 0 chr12 124039002 124039294 -20243195 + AluY SINE Alu 1 296 -15 199 74 0 0 chr12 124039326 124039353 -20243136 + MIR SINE MIR 118 144 -118 222 284 78 0 chr12 124039469 124039571 -20242918 + MIR SINE MIR 119 228 -34 25 0 0 0 chr12 124039978 124040003 -20242486 + AT_rich Low_complexity Low_complexity 1 25 0 371 238 181 25 chr12 124040849 124041009 -20241480 - MER5A DNA MER1_type -1 188 4 1819 209 102 30 chr12 124041245 124041714 -20240775 - MLT1D LTR MaLR 0 505 3 864 167 73 57 chr12 124041883 124042075 -20240414 + MLT1G1 LTR MaLR 1 195 -400 822 251 78 6 chr12 124042076 124042269 -20240220 + MLT1G LTR MaLR 91 301 -289 214 261 72 27 chr12 124042314 124042425 -20240064 - L2 LINE L2 -322 2991 2876 669 211 70 23 chr12 124042489 124042660 -20239829 + MLT1G LTR MaLR 412 590 0 246 293 52 26 chr12 124042942 124043058 -20239431 - MLT1K LTR MaLR -287 301 183 498 267 15 56 chr12 124043668 124043863 -20238626 + MIR SINE MIR 20 206 -56 1819 262 83 44 chr12 124044021 124044182 -20238307 + L1ME3A LINE L1 4991 5144 -1026 420 20 0 0 chr12 124044182 124044231 -20238258 + (TG)n Simple_repeat Simple_repeat 2 50 0 1819 262 83 44 chr12 124044231 124045197 -20237292 + L1ME3A LINE L1 5144 6170 0 683 255 59 5 chr12 124046118 124046322 -20236167 + MIR SINE MIR 47 261 -1 1413 229 113 82 chr12 124046411 124046452 -20236037 - MLT1G LTR MaLR -11 579 541 1299 165 79 29 chr12 124046452 124046731 -20235758 + AluJb SINE Alu 3 295 -17 1413 229 113 82 chr12 124046731 124047238 -20235251 - MLT1G LTR MaLR -49 541 14 396 289 43 47 chr12 124047264 124047496 -20234993 - MIR SINE MIR -26 236 6 633 120 47 0 chr12 124047511 124047661 -20234828 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 207 337 0 20 chr12 124047934 124048032 -20234457 - MIR3 SINE MIR -9 199 104 2096 157 39 36 chr12 124048217 124048765 -20233724 + MLT2A2 LTR ERVL 1 554 0 249 233 17 0 chr12 124049126 124049186 -20233303 + (CAATA)n Simple_repeat Simple_repeat 4 64 0 445 267 44 7 chr12 124049998 124050133 -20232356 - MIR SINE MIR -120 142 3 284 224 0 0 chr12 124050196 124050254 -20232235 - L2 LINE L2 0 3272 3215 302 320 95 62 chr12 124050325 124050650 -20231839 - LTR16C LTR ERVL 0 491 156 27 0 0 0 chr12 124050917 124050944 -20231545 + AT_rich Low_complexity Low_complexity 1 27 0 248 257 80 18 chr12 124051110 124051223 -20231266 - MIR SINE MIR -71 137 18 508 248 26 0 chr12 124051472 124051585 -20230904 + MIR SINE MIR 70 185 -77 286 291 87 35 chr12 124052035 124052207 -20230282 + MER117 DNA MER1_type 17 197 0 205 329 66 0 chr12 124052369 124052445 -20230044 + L2 LINE L2 3148 3228 -44 186 167 0 0 chr12 124052515 124052551 -20229938 + (TGG)n Simple_repeat Simple_repeat 1 36 0 370 270 8 16 chr12 124052590 124052716 -20229773 + (ATGGTG)n Simple_repeat Simple_repeat 1 125 0 327 252 26 5 chr12 124053024 124053164 -20229325 - MIR SINE MIR -16 246 104 21 100 0 0 chr12 124053930 124054000 -20228489 + AT_rich Low_complexity Low_complexity 1 70 0 527 301 81 26 chr12 124054039 124054457 -20228032 - L1ME4a LINE L1 -81 6040 5600 375 282 61 37 chr12 124055092 124055176 -20227313 + MIR SINE MIR 92 172 -90 1327 165 63 107 chr12 124055176 124055558 -20226931 - MLT1A1 LTR MaLR 0 365 1 375 282 61 37 chr12 124055558 124055636 -20226853 + MIR SINE MIR 172 258 -4 186 103 0 0 chr12 124055710 124055739 -20226750 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 352 233 21 39 chr12 124056081 124056252 -20226237 + MIR SINE MIR 1 241 -21 253 315 33 0 chr12 124056672 124056764 -20225725 - MIR SINE MIR -71 191 97 409 343 103 0 chr12 124056786 124056990 -20225499 + MIR SINE MIR 15 239 -23 1924 242 25 37 chr12 124057760 124058355 -20224134 - L1ME3A LINE L1 -1 6169 5582 523 306 25 17 chr12 124058390 124058641 -20223848 - MIR SINE MIR 0 262 10 423 278 117 82 chr12 124058739 124059056 -20223433 + L2 LINE L2 2945 3272 0 190 294 109 11 chr12 124059497 124059589 -20222900 + L2 LINE L2 3116 3216 -56 * 354 294 62 102 chr12 124059578 124060098 -20222391 + L2 LINE L2 2811 3309 -4 1326 296 90 12 chr12 124060222 124061070 -20221419 + L2 LINE L2 2392 3300 -13 553 185 34 13 chr12 124061079 124061321 -20221168 + GA-rich Low_complexity Low_complexity 1 247 0 677 174 18 12 chr12 124061332 124061499 -20220990 + GA-rich Low_complexity Low_complexity 3 170 0 252 197 16 16 chr12 124061499 124061560 -20220929 + (TGAA)n Simple_repeat Simple_repeat 3 63 0 29 70 0 0 chr12 124062211 124062268 -20220221 + AT_rich Low_complexity Low_complexity 1 57 0 356 256 0 12 chr12 124062347 124062433 -20220056 - L2 LINE L2 0 3313 3229 454 313 17 6 chr12 124062549 124062728 -20219761 - L1MC4a LINE L1 -1899 5909 5729 312 379 124 6 chr12 124062966 124063127 -20219362 + L2 LINE L2 3091 3270 -2 853 122 74 47 chr12 124063149 124063297 -20219192 + L1PB4 LINE L1 5641 5792 -364 291 207 41 16 chr12 124063326 124063447 -20219042 + (TATAA)n Simple_repeat Simple_repeat 1 124 0 2124 161 11 5 chr12 124063450 124063822 -20218667 + L1PB4 LINE L1 5783 6156 0 21 0 0 0 chr12 124063822 124063843 -20218646 + AT_rich Low_complexity Low_complexity 1 21 0 181 266 0 32 chr12 124063880 124063972 -20218517 + (TAGA)n Simple_repeat Simple_repeat 3 92 -30 1835 146 3 45 chr12 124063972 124064280 -20218209 + AluSx SINE Alu 1 295 -17 181 266 0 32 chr12 124064280 124064311 -20218178 + (TAGA)n Simple_repeat Simple_repeat 92 122 0 303 28 0 0 chr12 124064357 124064393 -20218096 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 447 254 195 5 chr12 124065303 124065488 -20217001 - MIR SINE MIR -6 256 37 486 304 107 39 chr12 124065869 124066123 -20216366 - L2 LINE L2 -219 3053 2788 1398 288 51 0 chr12 124066127 124066540 -20215949 + LTR16A LTR ERVL 7 440 -10 205 196 0 39 chr12 124067086 124067137 -20215352 - MIR SINE MIR -20 242 194 520 266 39 53 chr12 124067175 124067382 -20215107 - MIR SINE MIR -51 211 8 1134 244 134 10 chr12 124068649 124069043 -20213446 + MLT1J2 LTR MaLR 4 446 -4 1100 249 64 36 chr12 124069190 124069400 -20213089 + MER113 DNA MER1_type? 9 212 -309 1592 178 0 58 chr12 124069400 124069726 -20212763 + AluJb SINE Alu 1 307 -5 1100 249 64 36 chr12 124069726 124069936 -20212553 + MER113 DNA MER1_type? 212 441 -80 288 165 31 62 chr12 124070427 124070524 -20211965 + (TTGTG)n Simple_repeat Simple_repeat 1 94 0 26 74 0 0 chr12 124070645 124070699 -20211790 + AT_rich Low_complexity Low_complexity 1 54 0 208 353 73 7 chr12 124070727 124070863 -20211626 + MIR3 SINE MIR 64 208 0 685 232 6 12 chr12 124070909 124071077 -20211412 + MIR SINE MIR 64 230 -32 246 275 192 0 chr12 124071107 124071227 -20211262 + MIR SINE MIR 96 238 -24 1514 115 51 0 chr12 124071953 124072170 -20210319 + MER30 DNA MER1_type 3 230 0 454 247 84 19 chr12 124072244 124072398 -20210091 + MIR3 SINE MIR 15 178 -30 3063 181 33 8 chr12 124072444 124072957 -20209532 - L1MB7 LINE L1 -297 5887 5352 2271 104 10 3 chr12 124072957 124073264 -20209225 - AluSx SINE Alu -3 309 1 3063 181 33 8 chr12 124073264 124073526 -20208963 - L1MB7 LINE L1 -832 5352 5098 580 143 0 0 chr12 124073621 124073705 -20208784 - AluJb SINE Alu -23 289 206 383 287 47 0 chr12 124074518 124074647 -20207842 - MIR SINE MIR -62 200 66 225 339 82 41 chr12 124074766 124074937 -20207552 + MIR SINE MIR 8 185 -77 355 232 58 45 chr12 124075137 124075292 -20207197 + MIR SINE MIR 69 225 -37 213 94 0 0 chr12 124075614 124075646 -20206843 + (CA)n Simple_repeat Simple_repeat 2 33 0 991 236 103 72 chr12 124076311 124076542 -20205947 - L2 LINE L2 0 3313 3091 450 53 0 0 chr12 124076542 124076599 -20205890 + (TG)n Simple_repeat Simple_repeat 2 58 0 991 236 103 72 chr12 124076599 124076842 -20205647 - L2 LINE L2 -222 3091 2824 259 344 21 0 chr12 124076961 124077057 -20205432 - MIR SINE MIR -63 145 48 628 153 10 0 chr12 124077183 124077281 -20205208 + MER20 DNA MER1_type 121 219 0 207 100 0 0 chr12 124077917 124077947 -20204542 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 209 336 34 84 chr12 124077952 124078071 -20204418 - L2 LINE L2 -24 3248 3136 209 250 18 18 chr12 124078170 124078226 -20204263 - L2 LINE L2 -190 3082 3027 991 174 68 29 chr12 124078237 124078444 -20204045 - MER20 DNA MER1_type -4 215 1 214 281 140 45 chr12 124078488 124078666 -20203823 - L2 LINE L2 -496 2818 2624 260 276 37 12 chr12 124079246 124079360 -20203129 - MIR SINE MIR -67 141 31 3170 70 0 41 chr12 124079461 124079904 -20202585 + MLT2A1 LTR ERVL 1 425 -19 270 48 143 0 chr12 124079909 124079951 -20202538 + MLT2A1 LTR ERVL 394 441 -3 489 17 0 0 chr12 124079961 124080019 -20202470 + (TC)n Simple_repeat Simple_repeat 2 59 0 255 61 0 0 chr12 124080019 124080052 -20202437 + (TA)n Simple_repeat Simple_repeat 2 34 0 302 98 59 0 chr12 124080059 124080110 -20202379 + MLT2A2 LTR ERVL 400 453 0 279 350 127 6 chr12 124080231 124080388 -20202101 - MIR SINE MIR -59 203 28 214 306 82 0 chr12 124080853 124080987 -20201502 + L2 LINE L2 2856 3000 -313 267 322 22 0 chr12 124081138 124081228 -20201261 - MIR SINE MIR -120 142 51 797 273 73 19 chr12 124082058 124082263 -20200226 - MER58A DNA MER1_type -6 218 3 278 289 24 12 chr12 124082487 124082570 -20199919 + L2 LINE L2 3230 3313 0 234 204 0 0 chr12 124082893 124082947 -20199542 + L1ME4a LINE L1 6068 6121 0 299 254 53 85 chr12 124083021 124083073 -20199416 - MER5A DNA MER1_type -6 183 131 1753 163 20 14 chr12 124083073 124083368 -20199121 + AluJo SINE Alu 1 297 -15 299 254 53 85 chr12 124083368 124083504 -20198985 - MER5A DNA MER1_type -58 131 1 880 243 171 58 chr12 124084416 124084885 -20197604 - MLT1G1 LTR MaLR 0 595 74 452 325 24 19 chr12 124085344 124085556 -20196933 - MIR SINE MIR -1 261 49 1407 200 144 19 chr12 124086062 124086472 -20196017 + MLT1C LTR MaLR 7 467 0 699 241 87 104 chr12 124087797 124088142 -20194347 + MER102b DNA MER1_type 1 339 -2 205 274 151 50 chr12 124088333 124088512 -20193977 + L2 LINE L2 2992 3188 -84 195 42 0 0 chr12 124088659 124088683 -20193806 + (TAA)n Simple_repeat Simple_repeat 3 26 0 890 251 73 32 chr12 124088737 124089108 -20193381 - LTR16B LTR ERVL 0 464 79 450 298 43 5 chr12 124089629 124089817 -20192672 - MIR SINE MIR -24 238 44 24 53 0 0 chr12 124090090 124090128 -20192361 + GC_rich Low_complexity Low_complexity 1 38 0 34 72 0 0 chr12 124090163 124090232 -20192257 + GC_rich Low_complexity Low_complexity 1 69 0 332 93 0 19 chr12 124090414 124090468 -20192021 + (TCCCC)n Simple_repeat Simple_repeat 4 56 0 237 180 0 0 chr12 124090565 124090615 -20191874 + (TG)n Simple_repeat Simple_repeat 2 51 0 372 254 20 43 chr12 124090714 124090967 -20191522 + CT-rich Low_complexity Low_complexity 1 247 0 2271 109 7 0 chr12 124091920 124092222 -20190267 - AluSq SINE Alu -9 304 1 922 196 13 0 chr12 124092432 124092590 -20189899 + FAM SINE Alu 4 163 -12 21 0 0 0 chr12 124093101 124093122 -20189367 + AT_rich Low_complexity Low_complexity 1 21 0 279 282 12 0 chr12 124093548 124093633 -20188856 + MIR SINE MIR 69 154 -108 283 260 0 57 chr12 124094015 124094138 -20188351 - MIR SINE MIR -27 235 120 1063 229 120 30 chr12 124094394 124094789 -20187700 - MLT1J1 LTR MaLR -9 441 1 1878 154 0 40 chr12 124094953 124095277 -20187212 + AluSx SINE Alu 1 311 -1 208 154 0 26 chr12 124095277 124095316 -20187173 + GA-rich Low_complexity Low_complexity 1 38 0 791 158 7 0 chr12 124095317 124095361 -20187128 + A-rich Low_complexity Low_complexity 3 149 0 722 69 0 10 chr12 124095361 124095463 -20187026 + (GAAAA)n Simple_repeat Simple_repeat 4 104 0 233 317 85 40 chr12 124095612 124095836 -20186653 + L2 LINE L2 2830 3063 -209 425 274 102 32 chr12 124096129 124096485 -20186004 + MLT1L LTR MaLR 137 542 -73 1652 126 56 0 chr12 124096571 124096841 -20185648 - L1PB4 LINE L1 -116 6040 5756 231 321 0 25 chr12 124096843 124096924 -20185565 + MER94 DNA DNA 56 134 0 215 259 22 126 chr12 124096970 124097046 -20185443 + MIR SINE MIR 118 176 -86 2308 109 0 0 chr12 124097046 124097348 -20185141 + AluSx SINE Alu 1 302 -10 215 259 22 126 chr12 124097348 124097406 -20185083 + MIR SINE MIR 176 238 -24 222 118 0 0 chr12 124097712 124097746 -20184743 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 2295 109 0 3 chr12 124098649 124098961 -20183528 - AluY SINE Alu 0 311 1 324 335 55 40 chr12 124099399 124099671 -20182818 - L1M4 LINE L1 -1011 5135 4860 302 174 116 80 chr12 124099774 124099912 -20182577 - L1M4 LINE L1 -1332 4814 4672 280 313 95 25 chr12 124100037 124100321 -20182168 - L1M4 LINE L1 -1897 4249 3946 270 231 31 0 chr12 124100389 124100454 -20182035 - L1M4 LINE L1 -2311 3835 3769 428 222 67 0 chr12 124100830 124100920 -20181569 - MER81 DNA DNA -15 99 4 23 33 0 0 chr12 124101102 124101132 -20181357 + AT_rich Low_complexity Low_complexity 1 30 0 1414 137 5 9 chr12 124101186 124101405 -20181084 + MER20 DNA MER1_type 2 219 0 316 263 0 35 chr12 124103033 124103147 -20179342 + MER103 DNA DNA 55 164 -2 319 266 49 35 chr12 124103665 124103808 -20178681 + MIR SINE MIR 24 168 -94 531 244 80 11 chr12 124104034 124104230 -20178259 + MIR SINE MIR 36 241 -21 341 241 11 0 chr12 124104577 124104664 -20177825 - L2 LINE L2 0 3272 3185 217 200 19 29 chr12 124104691 124104796 -20177693 + (TATATG)n Simple_repeat Simple_repeat 2 105 0 2002 145 0 3 chr12 124104846 124105142 -20177347 - AluSx SINE Alu -17 295 1 330 278 93 19 chr12 124105252 124105360 -20177129 - L2 LINE L2 -8 3264 3149 423 270 26 120 chr12 124105420 124105581 -20176908 + MIR SINE MIR 2 130 -132 1963 98 0 0 chr12 124105581 124105826 -20176663 + AluSg SINE Alu 54 298 -12 423 270 26 120 chr12 124105826 124105931 -20176558 + MIR SINE MIR 130 243 -19 22 35 0 0 chr12 124106028 124106057 -20176432 + AT_rich Low_complexity Low_complexity 1 29 0 186 71 0 0 chr12 124106075 124106103 -20176386 + (T)n Simple_repeat Simple_repeat 1 28 0 594 177 0 0 chr12 124106244 124106340 -20176149 + MER81 DNA DNA 1 96 -18 342 290 24 24 chr12 124106789 124106913 -20175576 + MIR SINE MIR 48 171 -91 189 0 0 0 chr12 124107381 124107402 -20175087 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 444 315 0 0 chr12 124107418 124107545 -20174944 + MER103 DNA DNA 11 137 -29 315 235 153 10 chr12 124108051 124108149 -20174340 - MIR SINE MIR -88 174 63 332 268 0 0 chr12 124108303 124108374 -20174115 + MER103 DNA DNA 11 81 -85 2121 191 52 54 chr12 124110072 124110574 -20171915 + MLT1D LTR MaLR 5 505 0 1905 171 0 3 chr12 124110716 124111021 -20171468 + AluJb SINE Alu 1 304 -8 475 291 15 31 chr12 124111045 124111241 -20171248 - L2 LINE L2 0 3313 3121 376 244 0 0 chr12 124111647 124111737 -20170752 - MER5A DNA MER1_type -85 104 15 689 219 7 0 chr12 124111888 124112034 -20170455 + MIR SINE MIR 65 211 -51 2140 121 0 0 chr12 124112249 124112554 -20169935 - AluSx SINE Alu 0 305 1 224 351 29 0 chr12 124112737 124112845 -20169644 - MIR SINE MIR -85 123 5 262 295 12 3 chr12 124114557 124114657 -20167832 + L1ME4a LINE L1 5671 5769 -393 22 35 0 0 chr12 124114749 124114778 -20167711 + AT_rich Low_complexity Low_complexity 1 29 0 236 229 0 0 chr12 124114796 124114844 -20167645 + L1ME4a LINE L1 5978 6025 -96 2618 103 0 3 chr12 124114966 124115336 -20167153 - L1PB1 LINE L1 0 6151 5783 198 167 0 0 chr12 124115340 124115376 -20167113 + (CATATA)n Simple_repeat Simple_repeat 2 37 0 227 239 34 11 chr12 124115376 124115464 -20167025 - L1MC4 LINE L1 -1339 6703 6614 226 175 0 126 chr12 124115388 124115491 -20166998 + L1MC4 LINE L1 6614 6703 -1339 * 709 162 0 12 chr12 124115519 124115663 -20166826 - L1P5 LINE L1 -361 5790 5655 275 240 13 0 chr12 124115664 124115739 -20166750 + MIR SINE MIR 129 204 -58 4308 112 5 3 chr12 124115739 124116145 -20166344 + L1PA15 LINE L1 5542 5951 -214 2166 80 4 4 chr12 124116145 124116421 -20166068 + AluY SINE Alu 19 294 -17 4308 112 5 3 chr12 124116421 124116631 -20165858 + L1PA15 LINE L1 5951 6159 -6 749 193 0 22 chr12 124117070 124117205 -20165284 + FLAM_A SINE Alu 1 132 -1 211 95 167 0 chr12 124117708 124117750 -20164739 + L2 LINE L2 3264 3312 -1 2456 54 6 38 chr12 124118401 124118716 -20163773 + AluY SINE Alu 4 308 -3 4349 105 3 2 chr12 124118717 124119324 -20163165 - L1PA13 LINE L1 -19 6144 5537 413 297 190 5 chr12 124119487 124119790 -20162699 + LTR16C LTR ERVL 51 460 -31 406 309 36 0 chr12 124119828 124119967 -20162522 + MIR SINE MIR 115 258 -4 2362 67 0 63 chr12 124120090 124120421 -20162068 + AluY SINE Alu 1 310 -1 446 210 89 15 chr12 124120516 124120664 -20161825 + MIR SINE MIR 100 261 -1 1844 166 0 30 chr12 124120710 124121005 -20161484 + AluJo SINE Alu 1 287 -20 261 57 0 0 chr12 124121005 124121040 -20161449 + (CATA)n Simple_repeat Simple_repeat 2 36 0 185 94 31 0 chr12 124121053 124121085 -20161404 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 859 232 23 18 chr12 124121703 124121923 -20160566 - MIR SINE MIR -10 252 32 394 295 33 0 chr12 124122054 124122176 -20160313 - MER117 DNA MER1_type -65 132 7 232 280 13 13 chr12 124122196 124122271 -20160218 - LTR67 LTR ERVL -17 540 466 294 181 165 45 chr12 124123592 124123725 -20158764 - MIR SINE MIR -47 215 67 207 100 0 0 chr12 124123854 124123884 -20158605 + (TG)n Simple_repeat Simple_repeat 2 31 0 1818 190 161 21 chr12 124124976 124125398 -20157091 + MLT1D LTR MaLR 23 503 -2 239 252 29 29 chr12 124126061 124126164 -20156325 - L2 LINE L2 -496 2818 2716 234 105 0 0 chr12 124126536 124126574 -20155915 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 422 276 115 13 chr12 124126576 124126732 -20155757 - L2 LINE L2 -15 3298 3127 357 266 108 19 chr12 124127019 124127177 -20155312 - L2 LINE L2 -254 3059 2888 194 289 175 35 chr12 124127300 124127414 -20155075 - L2 LINE L2 0 3313 3184 3067 182 22 5 chr12 124128135 124128727 -20153762 + L1MB5 LINE L1 5567 6168 -6 552 270 0 0 chr12 124129614 124129782 -20152707 - MIR SINE MIR -65 143 26 349 283 106 17 chr12 124130202 124130382 -20152107 - L2 LINE L2 0 3313 3118 1014 240 21 114 chr12 124130445 124130499 -20151990 - MLT1J LTR MaLR -22 489 432 2208 114 30 0 chr12 124130499 124130798 -20151691 + AluSq SINE Alu 1 308 -5 1014 240 21 114 chr12 124130798 124131070 -20151419 - MLT1J LTR MaLR -79 432 217 2146 125 0 0 chr12 124131070 124131383 -20151106 + AluSx SINE Alu 1 313 0 1014 240 21 114 chr12 124131383 124131529 -20150960 - MLT1J LTR MaLR -294 217 59 419 313 34 11 chr12 124131542 124131721 -20150768 + MIR SINE MIR 10 192 -70 382 296 40 17 chr12 124132283 124132459 -20150030 - MIR SINE MIR -24 238 59 207 387 0 7 chr12 124132593 124132730 -20149759 - L2 LINE L2 -463 2851 2716 372 198 38 19 chr12 124132788 124132894 -20149595 - MIR SINE MIR -108 154 47 484 315 52 13 chr12 124133550 124133782 -20148707 - MIR SINE MIR -5 257 17 253 306 30 22 chr12 124134230 124134364 -20148125 - MIR3 SINE MIR -63 145 11 1504 217 6 40 chr12 124134456 124134580 -20147909 + MER58B DNA MER1_type 4 131 -2289 2240 113 3 0 chr12 124134580 124134872 -20147617 + AluSx SINE Alu 1 293 -19 1504 217 6 40 chr12 124134872 124135093 -20147396 + MER58B DNA MER1_type 131 337 -4 239 198 22 22 chr12 124135664 124135755 -20146734 + GA-rich Low_complexity Low_complexity 2 92 0 363 222 0 0 chr12 124135759 124135831 -20146658 - Charlie4 DNA MER1_type -24 1937 1866 2808 148 36 22 chr12 124135951 124136301 -20146188 - L1MB3 LINE L1 -90 6093 5732 1874 85 37 54 chr12 124136301 124136596 -20145893 - AluSc SINE Alu -19 290 1 2808 148 36 22 chr12 124136596 124136750 -20145739 - L1MB3 LINE L1 -451 5732 5582 225 336 71 29 chr12 124136767 124136907 -20145582 - L2 LINE L2 -615 2699 2554 469 218 272 0 chr12 124137061 124137208 -20145281 + MIR SINE MIR 11 197 -65 243 258 67 34 chr12 124138010 124138099 -20144390 + MIR SINE MIR 38 129 -133 1832 205 119 7 chr12 124138102 124138522 -20143967 + MLT1C LTR MaLR 1 467 0 1112 106 0 29 chr12 124138727 124138897 -20143592 - L1PA8 LINE L1 0 6172 6008 715 270 65 48 chr12 124138960 124139316 -20143173 - L2 LINE L2 -59 3254 2893 573 219 146 18 chr12 124139436 124139600 -20142889 - MIR SINE MIR -18 244 60 367 300 18 9 chr12 124139827 124139937 -20142552 - L2 LINE L2 -6 3266 3156 197 246 16 0 chr12 124139942 124140003 -20142486 - MIR SINE MIR -115 147 86 228 178 0 0 chr12 124140398 124140443 -20142046 - MIR SINE MIR -87 175 131 194 330 11 0 chr12 124140750 124140841 -20141648 + L2 LINE L2 2920 3011 -261 1387 226 14 7 chr12 124141062 124141349 -20141140 + MLT1F LTR MaLR 4 292 -250 334 241 60 0 chr12 124141498 124141614 -20140875 - MIR SINE MIR -56 206 84 745 214 32 0 chr12 124141614 124141768 -20140721 - MLT1F1 LTR MaLR -5 562 404 460 222 0 0 chr12 124141803 124141893 -20140596 + AluJ/FRAM SINE Alu 217 306 -6 444 171 95 9 chr12 124141895 124142000 -20140489 - MIR SINE MIR -141 121 8 359 241 74 0 chr12 124142263 124142371 -20140118 - MIR SINE MIR -31 231 116 876 292 69 20 chr12 124143200 124143604 -20138885 + LTR16B LTR ERVL 41 464 0 551 255 173 7 chr12 124143612 124143905 -20138584 + L2 LINE L2 2720 3056 -257 647 250 62 13 chr12 124144027 124144251 -20138238 - MIR SINE MIR -1 261 27 4163 93 2 9 chr12 124144371 124144929 -20137560 + MER41A LTR ERV1 1 554 0 889 304 82 15 chr12 124145048 124145452 -20137037 + LTR33 LTR ERVL 34 464 -57 227 236 78 20 chr12 124145528 124145647 -20136842 - MIR SINE MIR -63 145 14 348 252 122 23 chr12 124145688 124145819 -20136670 + MIR SINE MIR 13 156 -106 221 155 52 0 chr12 124145875 124145933 -20136556 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 213 39 0 0 chr12 124145986 124146012 -20136477 + (CAT)n Simple_repeat Simple_repeat 1 26 0 408 340 13 0 chr12 124146633 124146783 -20135706 + MIR SINE MIR 14 165 -97 196 329 0 14 chr12 124146869 124146942 -20135547 + MIR SINE MIR 81 152 -110 215 331 22 43 chr12 124147110 124147249 -20135240 + MIR SINE MIR 127 262 0 818 303 99 41 chr12 124147644 124148007 -20134482 - MLT1K LTR MaLR -169 419 36 684 279 94 7 chr12 124148007 124148304 -20134185 - L1ME3A LINE L1 -196 5974 5652 614 232 35 7 chr12 124148378 124148495 -20133994 + MLT2C1 LTR ERVL 238 361 -36 252 0 0 0 chr12 124148495 124148523 -20133966 + (CA)n Simple_repeat Simple_repeat 2 29 0 614 232 35 7 chr12 124148523 124148547 -20133942 + MLT2C1 LTR ERVL 361 383 -14 207 274 77 23 chr12 124148776 124148911 -20133578 - MIR SINE MIR -63 145 3 569 283 35 115 chr12 124149360 124150009 -20132480 + L2 LINE L2 2658 3255 -17 203 214 24 0 chr12 124150017 124150059 -20132430 + GA-rich Low_complexity Low_complexity 2 44 0 216 306 192 0 chr12 124151036 124151265 -20131224 + L2 LINE L2 2005 2277 -1037 730 272 44 0 chr12 124151277 124151457 -20131032 - MLT1J2 LTR MaLR -7 443 256 735 242 46 0 chr12 124151472 124151625 -20130864 + MER20 DNA MER1_type 37 196 -23 1112 268 19 8 chr12 124151632 124151897 -20130592 - MLT1J2 LTR MaLR -182 268 1 186 255 0 0 chr12 124152192 124152243 -20130246 + (TG)n Simple_repeat Simple_repeat 2 52 0 596 273 13 0 chr12 124152243 124152397 -20130092 + L2 LINE L2 3158 3313 0 1225 98 0 0 chr12 124152643 124152806 -20129683 - AluSp SINE Alu -6 307 145 186 320 131 36 chr12 124152829 124153135 -20129354 + L2 LINE L2 2924 3258 -14 404 362 51 28 chr12 124153510 124153764 -20128725 + L2 LINE L2 2987 3246 -26 976 247 126 38 chr12 124153766 124154068 -20128421 - LTR33A LTR ERVL -2 521 160 2836 80 3 3 chr12 124154068 124154432 -20128057 - THE1B LTR MaLR 0 364 1 976 247 126 38 chr12 124154432 124154606 -20127883 - LTR33A LTR ERVL -363 160 3 705 297 62 50 chr12 124154665 124155066 -20127423 - MLT1I LTR MaLR -3 406 1 999 211 29 10 chr12 124155261 124155465 -20127024 - MLT1F LTR MaLR -38 504 297 2078 222 33 33 chr12 124155526 124156039 -20126450 + MLT1F LTR MaLR 3 515 -27 1023 238 116 30 chr12 124156070 124156432 -20126057 + MSTD LTR MaLR 1 393 -3 202 231 19 0 chr12 124156580 124156632 -20125857 + GA-rich Low_complexity Low_complexity 3 55 0 463 167 11 0 chr12 124158281 124158371 -20124118 + MIR SINE MIR 39 129 -133 1808 98 15 0 chr12 124158562 124158826 -20123663 - L1MA2 LINE L1 0 6304 6037 22 0 0 0 chr12 124158832 124158854 -20123635 + AT_rich Low_complexity Low_complexity 1 22 0 544 311 149 39 chr12 124159434 124159486 -20123003 + MLT1K LTR MaLR 1 46 -542 1906 128 0 104 chr12 124159486 124159831 -20122658 + AluJb SINE Alu 1 309 -3 544 311 149 39 chr12 124159831 124160241 -20122248 + MLT1K LTR MaLR 46 514 -74 1669 180 0 3 chr12 124161168 124161451 -20121038 + AluJo SINE Alu 1 282 -30 649 254 46 15 chr12 124161522 124161719 -20120770 - MIR SINE MIR -58 204 2 312 273 191 5 chr12 124161748 124161957 -20120532 - L1ME4a LINE L1 -4 6117 5870 24 32 0 0 chr12 124162065 124162096 -20120393 + AT_rich Low_complexity Low_complexity 1 31 0 2356 107 0 19 chr12 124162232 124162550 -20119939 + AluSx SINE Alu 1 312 0 342 235 12 0 chr12 124162550 124162635 -20119854 - L1ME4a LINE L1 -1999 5809 5724 235 304 18 36 chr12 124162638 124162750 -20119739 - L2 LINE L2 -279 3034 2925 701 243 72 0 chr12 124163885 124164066 -20118423 - MIR SINE MIR -44 218 25 661 192 69 138 chr12 124164066 124164342 -20118147 + MER33 DNA MER1_type 1 257 -67 238 250 0 0 chr12 124164330 124164386 -20118103 - AluJ/monomer SINE Alu -4 296 241 * 963 227 147 32 chr12 124164403 124164938 -20117551 - LTR50 LTR ERVL -149 646 2 508 29 130 0 chr12 124165238 124165307 -20117182 - MADE1 DNA Mariner -2 78 1 180 211 19 39 chr12 124165438 124165490 -20116999 + L2 LINE L2 3262 3312 -1 2201 126 3 0 chr12 124165885 124166187 -20116302 - AluSx SINE Alu -9 303 1 2550 101 17 3 chr12 124166271 124166629 -20115860 - THE1B LTR MaLR 0 364 2 225 154 0 0 chr12 124166637 124166676 -20115813 + (TA)n Simple_repeat Simple_repeat 1 39 0 232 170 0 0 chr12 124166681 124166728 -20115761 + LTR66 LTR ERVL 394 440 -170 311 242 0 21 chr12 124166876 124166989 -20115500 + MIR SINE MIR 33 139 -69 250 304 25 13 chr12 124167672 124167751 -20114738 + MIR SINE MIR 50 129 -79 482 256 59 30 chr12 124168047 124168250 -20114239 + L1ME4a LINE L1 5698 5906 -215 683 217 16 10 chr12 124168347 124168596 -20113893 + MER58 DNA MER1_type 51 2415 -5 230 319 53 53 chr12 124168885 124169054 -20113435 - MIR SINE MIR -12 250 82 607 263 43 47 chr12 124169927 124170159 -20112330 + MIR SINE MIR 32 262 0 323 212 71 0 chr12 124170367 124170452 -20112037 + MIR SINE MIR 95 185 -77 2361 89 3 25 chr12 124170857 124171173 -20111316 - AluSp SINE Alu 0 313 5 2314 113 0 3 chr12 124171386 124171696 -20110793 + AluSx SINE Alu 1 309 -3 457 324 32 54 chr12 124171888 124172166 -20110323 - MLT1L LTR MaLR -221 394 123 219 306 0 42 chr12 124172361 124172433 -20110056 + L2 LINE L2 3202 3270 -2 968 261 0 26 chr12 124172618 124172848 -20109641 - MER58A DNA MER1_type 0 224 1 1417 293 34 14 chr12 124172933 124173374 -20109115 - LTR16B LTR ERVL 0 464 15 183 42 0 0 chr12 124173901 124173925 -20108564 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1933 151 6 16 chr12 124174073 124174385 -20108104 + AluJo SINE Alu 1 309 -3 418 294 0 16 chr12 124174466 124174592 -20107897 + MIR SINE MIR 116 239 -23 1682 273 90 24 chr12 124175788 124176330 -20106159 + MLT1E LTR MaLR 8 585 -8 1650 222 34 37 chr12 124176723 124177160 -20105329 - MER63B DNA MER1_type 0 436 1 766 172 0 8 chr12 124177386 124177520 -20104969 + FLAM_A SINE Alu 1 133 0 1819 142 0 74 chr12 124177546 124177871 -20104618 + AluJb SINE Alu 12 312 0 416 242 5 124 chr12 124178792 124178986 -20103503 - MLT1L LTR MaLR -430 185 15 517 267 17 50 chr12 124179057 124179237 -20103252 - MIR SINE MIR -33 229 56 827 222 16 16 chr12 124179260 124179320 -20103169 - MER3 DNA MER1_type -1 208 149 1943 178 34 6 chr12 124179320 124179675 -20102814 + MER47A DNA MER2_type 1 365 -1 827 222 16 16 chr12 124179675 124179808 -20102681 - MER3 DNA MER1_type -59 150 15 292 314 148 19 chr12 124180573 124180783 -20101706 + MIR SINE MIR 20 256 -6 276 231 51 0 chr12 124181513 124181591 -20100898 - MER5A DNA MER1_type -55 134 53 480 243 36 14 chr12 124183033 124183173 -20099316 + MER103 DNA DNA 22 164 -2 181 297 29 94 chr12 124183236 124183374 -20099115 - MIR3 SINE MIR -48 160 32 325 365 15 0 chr12 124183435 124183572 -20098917 - L2 LINE L2 0 3313 3175 4394 212 73 5 chr12 124183628 124184627 -20097862 + Tigger6a DNA MER2_type 17 1083 0 372 262 56 65 chr12 124184672 124184886 -20097603 - LTR33 LTR ERVL -3 518 307 435 223 127 71 chr12 124184947 124185024 -20097465 - LTR33 LTR ERVL -306 215 144 2269 135 30 28 chr12 124185024 124185386 -20097103 - THE1B LTR MaLR -1 363 1 435 223 127 71 chr12 124185386 124185505 -20096984 - LTR33 LTR ERVL -377 144 8 874 249 84 0 chr12 124186075 124186288 -20096201 - MIR SINE MIR -31 231 1 684 334 63 60 chr12 124186774 124187490 -20094999 + L2 LINE L2 2174 2891 -423 304 214 12 24 chr12 124187510 124187618 -20094871 + MLT1F1 LTR MaLR 3 109 -458 1402 138 35 0 chr12 124187648 124187879 -20094610 - L1PA16 LINE L1 -9 6157 5919 561 236 84 69 chr12 124187879 124188082 -20094407 + MLT1F1 LTR MaLR 96 301 -266 235 242 40 40 chr12 124188106 124188205 -20094284 + MLT1F1 LTR MaLR 442 540 -2 382 286 50 49 chr12 124188218 124188490 -20093999 + L2 LINE L2 2918 3271 -1 1404 129 0 10 chr12 124189186 124189388 -20093101 - AluSg/x SINE Alu -16 296 97 2634 53 0 0 chr12 124189512 124189812 -20092677 - AluY SINE Alu -11 300 1 2027 142 13 0 chr12 124190153 124190456 -20092033 - AluSx SINE Alu -5 307 1 2228 116 3 0 chr12 124190831 124191125 -20091364 + AluSq SINE Alu 1 295 -18 456 250 53 0 chr12 124192185 124192317 -20090172 + MIR SINE MIR 54 192 -70 254 208 56 21 chr12 124192465 124192579 -20089910 + MIR SINE MIR 59 180 -82 1417 248 90 27 chr12 124193493 124193936 -20088553 - MLT1J LTR MaLR -8 503 33 225 313 24 12 chr12 124194102 124194185 -20088304 - L2 LINE L2 -1 3271 3188 25 0 0 0 chr12 124194432 124194457 -20088032 + AT_rich Low_complexity Low_complexity 1 25 0 2084 124 0 10 chr12 124196020 124196311 -20086178 + AluSx SINE Alu 1 288 -24 303 264 44 11 chr12 124196326 124196417 -20086072 + L1MC4 LINE L1 6607 6700 -1342 2048 247 49 19 chr12 124196418 124196988 -20085501 + L1ME2 LINE L1 5569 6155 -9 209 116 47 23 chr12 124196994 124197037 -20085452 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 384 268 0 47 chr12 124197046 124197173 -20085316 + L2 LINE L2 2930 3050 -263 270 297 20 54 chr12 124197372 124197520 -20084969 + LTR33 LTR ERVL 48 190 -331 3724 131 15 5 chr12 124197530 124198149 -20084340 - L1MC1 LINE L1 -471 5862 5237 2981 245 72 19 chr12 124198254 124199174 -20083315 + MER69B DNA AcHobo 257 1225 -1 437 215 0 0 chr12 124199604 124199683 -20082806 - MIR3 SINE MIR -49 159 81 204 40 0 0 chr12 124200052 124200077 -20082412 + (A)n Simple_repeat Simple_repeat 1 25 0 3754 67 1 4 chr12 124201242 124201701 -20080788 + MLT2A2 LTR ERVL 1 397 0 755 277 24 66 chr12 124201712 124202001 -20080488 - Charlie8 DNA MER1_type -2137 280 4 701 272 123 0 chr12 124202459 124202654 -20079835 + MIR SINE MIR 29 247 -15 366 277 75 43 chr12 124203139 124203327 -20079162 + MIR SINE MIR 3 196 -66 451 176 0 28 chr12 124203608 124203716 -20078773 + C-rich Low_complexity Low_complexity 3 107 0 247 221 8 47 chr12 124203688 124203815 -20078674 + CT-rich Low_complexity Low_complexity 1 122 0 * 348 256 111 20 chr12 124204080 124204279 -20078210 - L1ME4a LINE L1 -23 6098 5882 1341 255 80 34 chr12 124204340 124204563 -20077926 - L2 LINE L2 0 3313 3102 420 20 0 0 chr12 124204563 124204612 -20077877 + (TG)n Simple_repeat Simple_repeat 2 50 0 1341 255 80 34 chr12 124204612 124205017 -20077472 - L2 LINE L2 -211 3102 2664 1340 124 0 10 chr12 124205850 124206052 -20076437 - AluSg/x SINE Alu -16 296 97 2442 47 3 0 chr12 124206172 124206468 -20076021 - AluY SINE Alu -10 301 5 1868 141 13 3 chr12 124206813 124207117 -20075372 - AluSx SINE Alu -5 307 1 190 371 0 21 chr12 124208124 124208221 -20074268 - MIR SINE MIR -147 115 21 344 239 82 15 chr12 124208432 124208566 -20073923 + L1MC/D LINE L1 5610 5752 -2056 224 272 5 41 chr12 124208603 124208687 -20073802 + MIR SINE MIR 18 94 -114 1806 192 48 83 chr12 124208837 124209044 -20073445 + MLT1C LTR MaLR 6 219 -248 2227 114 0 0 chr12 124209044 124209350 -20073139 + AluSx SINE Alu 4 309 -3 1806 192 48 83 chr12 124209350 124209621 -20072868 + MLT1C LTR MaLR 219 467 0 463 306 153 22 chr12 124210727 124210949 -20071540 - MIR SINE MIR -1 261 11 436 281 85 67 chr12 124211169 124211734 -20070755 + L1ME4a LINE L1 5523 6097 -24 701 249 21 7 chr12 124211735 124211918 -20070571 + MLT1I LTR MaLR 2 191 -238 264 165 0 157 chr12 124211946 124212061 -20070428 + MLT1I LTR MaLR 298 394 -15 21 0 0 0 chr12 124212521 124212542 -20069947 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 124213392 124213415 -20069074 + AT_rich Low_complexity Low_complexity 1 23 0 267 114 0 0 chr12 124213614 124213658 -20068831 + (TC)n Simple_repeat Simple_repeat 1 44 0 1852 188 48 83 chr12 124213837 124214108 -20068381 - MLT1C LTR MaLR 0 467 219 2227 114 0 0 chr12 124214108 124214414 -20068075 - AluSx SINE Alu -3 309 4 1852 188 48 83 chr12 124214414 124214621 -20067868 - MLT1C LTR MaLR -248 219 6 224 272 5 41 chr12 124214771 124214855 -20067634 - MIR SINE MIR -114 94 18 355 237 74 15 chr12 124214892 124215027 -20067462 - L1MC/D LINE L1 -2056 5752 5610 397 320 0 0 chr12 124215238 124215338 -20067151 + MIR SINE MIR 21 120 -142 1732 147 23 26 chr12 124215360 124215667 -20066822 + AluSx SINE Alu 7 312 0 180 268 49 0 chr12 124216009 124216050 -20066439 - L2 LINE L2 -2830 484 442 375 325 26 8 chr12 124216306 124216423 -20066066 - L2 LINE L2 -21 3251 3133 1146 188 34 103 chr12 124216702 124217022 -20065467 - AluJo SINE Alu -3 299 2 2041 134 0 6 chr12 124218166 124218480 -20064009 - AluSx SINE Alu 0 312 1 348 24 0 0 chr12 124218699 124218740 -20063749 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 424 191 305 9 chr12 124219479 124219584 -20062905 - MIR SINE MIR -25 237 102 240 272 10 78 chr12 124219586 124219689 -20062800 + MER81 DNA DNA 17 112 -2 210 284 187 45 chr12 124219787 124219921 -20062568 + MIR SINE MIR 24 176 -86 594 270 139 35 chr12 124220605 124220835 -20061654 + MIR SINE MIR 9 262 0 350 269 13 0 chr12 124221031 124221109 -20061380 + MER45C DNA AcHobo 1 79 -874 1089 296 78 45 chr12 124221142 124221568 -20060921 + MER45C DNA AcHobo 137 576 -377 1345 182 53 35 chr12 124221839 124222158 -20060331 + MER45B DNA AcHobo 716 1040 0 398 276 83 13 chr12 124222357 124222513 -20059976 + MIR SINE MIR 84 250 -12 318 200 0 29 chr12 124223239 124223309 -20059180 + L1ME LINE L1 5513 5580 -541 412 266 82 27 chr12 124223326 124223510 -20058979 + L1ME LINE L1 5546 5739 -382 378 253 60 20 chr12 124223544 124223831 -20058658 - MLT1G1 LTR MaLR 0 595 190 340 269 54 40 chr12 124223981 124224130 -20058359 + MER102b DNA MER1_type 190 340 -1 1125 138 14 33 chr12 124224232 124224442 -20058047 + L1PA15 LINE L1 5959 6164 -1 1442 95 46 65 chr12 124225320 124225556 -20056933 - Tigger2 DNA MER2_type 0 2718 2486 1557 180 33 13 chr12 124225556 124225856 -20056633 + AluJo SINE Alu 1 306 -6 1442 95 46 65 chr12 124225856 124225881 -20056608 - Tigger2 DNA MER2_type -232 2486 2462 4596 148 9 4 chr12 124225948 124226687 -20055802 - Tigger2 DNA MER2_type -1974 744 2 507 33 0 0 chr12 124226858 124226919 -20055570 + (CA)n Simple_repeat Simple_repeat 2 62 0 1890 225 34 0 chr12 124226920 124227334 -20055155 - MER63B DNA MER1_type -3 433 6 248 291 0 0 chr12 124227446 124227532 -20054957 + (TA)n Simple_repeat Simple_repeat 2 87 0 221 325 61 61 chr12 124227559 124227673 -20054816 - MIR3 SINE MIR -19 189 76 280 192 19 0 chr12 124228519 124228571 -20053918 - L2 LINE L2 0 3313 3261 592 230 0 109 chr12 124228580 124228754 -20053735 - MER45A DNA AcHobo 0 178 24 1379 303 49 53 chr12 124228781 124229350 -20053139 - L2 LINE L2 -57 3256 2686 1773 183 0 0 chr12 124229350 124229656 -20052833 - AluJo SINE Alu -6 306 1 1379 303 49 53 chr12 124229656 124229754 -20052735 - L2 LINE L2 -627 2686 2589 1416 259 18 3 chr12 124229754 124230090 -20052399 - MER58B DNA MER1_type 0 341 1 1379 303 49 53 chr12 124230090 124230317 -20052172 - L2 LINE L2 -724 2589 2369 456 283 25 83 chr12 124230331 124230571 -20051918 - MIR SINE MIR -1 261 36 411 143 14 0 chr12 124231632 124231702 -20050787 + MADE1 DNA Mariner 9 79 -1 252 293 73 27 chr12 124231917 124232067 -20050422 + MIR SINE MIR 85 241 -21 * 603 294 28 28 chr12 124232060 124232274 -20050215 - MIR SINE MIR -3 259 46 247 316 47 41 chr12 124232514 124232685 -20049804 - LTR16B LTR ERVL 0 464 293 335 309 137 18 chr12 124232716 124232884 -20049605 - LTR16B LTR ERVL -210 254 67 1219 107 0 11 chr12 124233439 124233617 -20048872 - AluSg/x SINE Alu -1 309 134 547 277 15 0 chr12 124233743 124233880 -20048609 + MIR SINE MIR 99 237 -25 1051 212 57 0 chr12 124234718 124234930 -20047559 - MIR SINE MIR -1 261 38 976 259 9 5 chr12 124234933 124235153 -20047336 + MER58A DNA MER1_type 4 224 0 208 244 179 26 chr12 124235267 124235345 -20047144 - MIR3 SINE MIR -41 167 78 259 267 89 0 chr12 124235852 124235953 -20046536 + MER113 DNA MER1_type? 100 209 -312 3768 170 63 38 chr12 124235963 124236111 -20046378 + L1MB7 LINE L1 5186 5329 -855 2374 65 3 7 chr12 124236111 124236420 -20046069 + AluY SINE Alu 1 308 -3 3768 170 63 38 chr12 124236420 124237218 -20045271 + L1MB7 LINE L1 5329 6173 -11 723 229 49 29 chr12 124237218 124237423 -20045066 + MER113 DNA MER1_type? 204 412 -109 434 253 86 29 chr12 124237422 124237596 -20044893 + MER113 DNA MER1_type? 331 514 -7 * 1185 256 71 36 chr12 124237612 124238281 -20044208 + L2 LINE L2 2621 3313 0 817 279 45 9 chr12 124238626 124238848 -20043641 - MIR SINE MIR 0 262 33 352 292 223 0 chr12 124239015 124239145 -20043344 - MIR SINE MIR -21 241 83 431 264 15 27 chr12 124239702 124239872 -20042617 - MIR SINE MIR -10 198 33 572 275 7 7 chr12 124240233 124240371 -20042118 - L2 LINE L2 0 3313 3176 337 186 142 169 chr12 124240372 124240570 -20041919 + MLT1D LTR MaLR 2 191 -314 2031 138 0 7 chr12 124240570 124240875 -20041614 + AluJb SINE Alu 1 303 -9 337 186 142 169 chr12 124240875 124240971 -20041518 + MLT1D LTR MaLR 191 288 -217 666 228 0 0 chr12 124241015 124241142 -20041347 - MIR SINE MIR -102 160 34 972 216 5 10 chr12 124241197 124241401 -20041088 + MLT1D LTR MaLR 303 505 0 881 188 11 28 chr12 124242087 124242268 -20040221 - AluJb SINE Alu -13 299 122 1178 271 51 47 chr12 124242575 124243025 -20039464 + LTR16B LTR ERVL 1 452 -12 420 303 198 35 chr12 124243191 124243505 -20038984 - MER115 DNA AcHobo -168 525 161 3280 223 33 34 chr12 124244124 124244587 -20037902 + L1ME1 LINE L1 5345 5808 -358 2627 134 65 0 chr12 124244587 124244989 -20037500 + MSTA LTR MaLR 1 428 0 3280 223 33 34 chr12 124244989 124245343 -20037146 + L1ME1 LINE L1 5808 6161 -5 2583 143 52 2 chr12 124245362 124245768 -20036721 + MSTB LTR MaLR 1 426 0 824 286 58 0 chr12 124245785 124246009 -20036480 - MIR SINE MIR -21 241 5 557 256 56 11 chr12 124247073 124247253 -20035236 + MER117 DNA MER1_type 9 196 -1 1006 206 6 0 chr12 124247570 124247750 -20034739 + MER58A DNA MER1_type 44 224 0 351 230 171 40 chr12 124248105 124248257 -20034232 + MER117 DNA MER1_type 16 187 -10 1818 151 0 3 chr12 124248507 124248806 -20033683 + AluSx SINE Alu 1 298 -14 259 77 19 19 chr12 124249500 124249552 -20032937 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 1839 144 0 0 chr12 124249555 124249833 -20032656 - AluSx SINE Alu -34 278 1 355 287 78 36 chr12 124249978 124250145 -20032344 + MIR SINE MIR 2 175 -87 996 265 0 35 chr12 124250150 124250407 -20032082 - MLT1C LTR MaLR 0 467 220 286 271 83 35 chr12 124250911 124251055 -20031434 - MLT1C LTR MaLR -274 231 81 209 125 0 25 chr12 124251065 124251105 -20031384 + (TTTTTA)n Simple_repeat Simple_repeat 3 41 0 1584 110 17 0 chr12 124251125 124251361 -20031128 - L1PB1 LINE L1 -1 6150 5911 2455 119 22 0 chr12 124251372 124251741 -20030748 - L1PB1 LINE L1 -300 5851 5475 371 224 31 0 chr12 124251744 124251842 -20030647 - MLT1C LTR MaLR -366 101 1 207 298 0 0 chr12 124251844 124251901 -20030588 + MIR SINE MIR 180 236 -26 381 75 0 0 chr12 124251986 124252039 -20030450 + (TC)n Simple_repeat Simple_repeat 2 54 0 249 255 69 10 chr12 124252040 124252142 -20030347 - LTR16C LTR ERVL -3 488 381 340 256 78 78 chr12 124252149 124252224 -20030265 - LTR16C LTR ERVL -69 422 348 2149 109 7 0 chr12 124252224 124252528 -20029961 - AluSc SINE Alu -3 306 1 340 256 78 78 chr12 124252528 124252682 -20029807 - LTR16C LTR ERVL -142 349 193 1880 193 31 66 chr12 124252956 124253438 -20029051 + MLT1C LTR MaLR 1 465 -2 733 155 39 23 chr12 124254803 124254932 -20027557 + FLAM_A SINE Alu 1 131 -2 719 203 156 47 chr12 124255087 124255299 -20027190 - MLT1H LTR MaLR -7 542 308 950 186 28 0 chr12 124255628 124255805 -20026684 - MER58A DNA MER1_type -6 218 37 239 304 142 63 chr12 124255819 124256200 -20026289 - L2 LINE L2 -2 3311 2901 452 326 65 35 chr12 124256382 124256612 -20025877 + MIR SINE MIR 21 257 -5 214 191 21 0 chr12 124257086 124257133 -20025356 + (GGGTG)n Simple_repeat Simple_repeat 4 51 0 246 318 0 0 chr12 124257593 124257681 -20024808 + G-rich Low_complexity Low_complexity 1 88 0 439 264 111 7 chr12 124258471 124258615 -20023874 + MIR SINE MIR 10 168 -94 589 225 163 12 chr12 124258736 124258896 -20023593 + MER5A DNA MER1_type 4 187 -2 523 259 125 57 chr12 124259416 124259713 -20022776 + L2 LINE L2 2991 3307 -6 279 239 127 67 chr12 124259716 124259850 -20022639 + MIR SINE MIR 118 259 -3 413 275 73 51 chr12 124260127 124260305 -20022184 + MIR SINE MIR 72 253 -9 222 234 39 58 chr12 124260303 124260420 -20022069 - MIR SINE MIR -62 146 90 * 186 133 0 0 chr12 124260436 124260466 -20022023 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 2175 92 3 3 chr12 124260645 124260948 -20021541 - AluSq SINE Alu -10 303 1 627 324 13 13 chr12 124261138 124261363 -20021126 - MIR SINE MIR -4 258 34 773 264 38 5 chr12 124261675 124261887 -20020602 + MIR SINE MIR 30 248 -14 189 0 0 0 chr12 124261887 124261908 -20020581 + (A)n Simple_repeat Simple_repeat 1 21 0 550 183 8 8 chr12 124262469 124262595 -20019894 + (TGGA)n Simple_repeat Simple_repeat 1 126 0 189 74 0 0 chr12 124262656 124262683 -20019806 + (GGATG)n Simple_repeat Simple_repeat 4 30 0 404 228 18 18 chr12 124262766 124262933 -20019556 + (TGGA)n Simple_repeat Simple_repeat 4 170 0 446 263 111 34 chr12 124263175 124263332 -20019157 - MIR SINE MIR -65 143 21 331 294 136 16 chr12 124263458 124263642 -20018847 - MIR SINE MIR -7 255 50 306 243 16 74 chr12 124263794 124263983 -20018506 + A-rich Low_complexity Low_complexity 3 180 0 220 130 0 43 chr12 124264219 124264265 -20018224 + (AGGGGG)n Simple_repeat Simple_repeat 5 48 0 514 281 150 7 chr12 124264708 124264861 -20017628 + MER5A DNA MER1_type 13 187 -2 2033 110 0 46 chr12 124264900 124265227 -20017262 + AluSx SINE Alu 1 312 0 639 264 58 6 chr12 124267620 124267794 -20014695 - MIR SINE MIR -36 226 44 2025 123 7 0 chr12 124268020 124268313 -20014176 - AluSx SINE Alu -17 295 1 334 298 93 7 chr12 124268439 124268590 -20013899 + MLT1K LTR MaLR 2 165 -423 295 321 66 20 chr12 124268737 124268933 -20013556 + MLT1K LTR MaLR 378 582 -6 207 234 21 0 chr12 124269282 124269329 -20013160 + GA-rich Low_complexity Low_complexity 4 51 0 217 322 133 0 chr12 124269406 124269496 -20012993 + L2 LINE L2 3171 3272 0 296 302 147 8 chr12 124269902 124270031 -20012458 - MIR3 SINE MIR -24 184 38 263 296 41 10 chr12 124270082 124270180 -20012309 - MIR SINE MIR -80 128 28 353 281 21 0 chr12 124270399 124270495 -20011994 - MIR SINE MIR -13 249 152 2503 221 17 20 chr12 124270570 124270918 -20011571 - MLT1F LTR MaLR 0 542 195 2204 178 24 22 chr12 124270918 124271372 -20011117 - MSTB2 LTR MaLR -2 455 1 2503 221 17 20 chr12 124271372 124271565 -20010924 - MLT1F LTR MaLR -347 195 3 1219 209 116 8 chr12 124271577 124271845 -20010644 + AluJo SINE Alu 1 297 -5 333 293 8 8 chr12 124273006 124273129 -20009360 - MIR3 SINE MIR -81 127 5 309 308 92 0 chr12 124273592 124273712 -20008777 - MIR SINE MIR -22 240 110 271 320 127 28 chr12 124273978 124274159 -20008330 - MIR SINE MIR -3 259 61 2312 191 60 25 chr12 124274182 124274669 -20007820 + MLT1D LTR MaLR 2 505 0 210 143 0 0 chr12 124275577 124275612 -20006877 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 24 67 0 0 chr12 124275894 124275939 -20006550 + AT_rich Low_complexity Low_complexity 1 45 0 574 223 74 0 chr12 124276021 124276169 -20006320 - MIR SINE MIR -59 203 45 468 0 0 0 chr12 124276328 124276380 -20006109 + (TG)n Simple_repeat Simple_repeat 1 52 0 1384 171 51 12 chr12 124276388 124276645 -20005844 - AluJb SINE Alu -45 267 1 378 275 84 104 chr12 124276747 124277293 -20005196 + L2 LINE L2 2442 2976 -338 296 246 66 57 chr12 124277395 124277450 -20005039 + MIR3 SINE MIR 33 86 -122 2280 95 0 0 chr12 124277450 124277755 -20004734 - AluSg SINE Alu -5 305 1 296 246 66 57 chr12 124277755 124277821 -20004668 + MIR3 SINE MIR 86 155 -53 360 301 15 22 chr12 124277839 124277975 -20004514 - LTR16B LTR ERVL -4 460 326 270 279 39 39 chr12 124278026 124278155 -20004334 - LTR16B LTR ERVL -232 232 104 239 258 47 86 chr12 124278266 124278394 -20004095 + MIR SINE MIR 85 207 -55 3529 166 18 8 chr12 124278583 124279234 -20003255 + L1MB3 LINE L1 5526 6183 0 323 355 114 19 chr12 124279241 124279452 -20003037 + MIR SINE MIR 21 251 -11 256 159 23 0 chr12 124280222 124280266 -20002223 - MLT1J2 LTR MaLR -15 435 391 823 254 106 35 chr12 124280297 124280346 -20002143 - MLT1J2 LTR MaLR -144 306 262 903 178 32 27 chr12 124280346 124280531 -20001958 - MER5A DNA MER1_type 0 189 4 823 254 106 35 chr12 124280531 124280765 -20001724 - MLT1J2 LTR MaLR -188 262 3 516 298 20 7 chr12 124280779 124280930 -20001559 - MIR SINE MIR -76 186 34 347 247 84 67 chr12 124280964 124281142 -20001347 - MIR SINE MIR -21 241 61 222 315 33 11 chr12 124281491 124281583 -20000906 - MIR SINE MIR -102 160 67 468 236 111 14 chr12 124281721 124281865 -20000624 + MIR SINE MIR 36 193 -69 440 232 188 56 chr12 124281892 124282142 -20000347 - L2 LINE L2 -5 3308 3026 413 325 145 28 chr12 124282170 124282266 -20000223 - L2 LINE L2 -2033 1281 1198 1610 183 115 8 chr12 124282266 124282622 -19999867 - MLT2C1 LTR ERVL -1 396 3 413 325 145 28 chr12 124282622 124282959 -19999530 - L2 LINE L2 -2116 1198 797 353 208 14 14 chr12 124283016 124283088 -19999401 + MIR SINE MIR 79 150 -58 986 201 26 82 chr12 124283142 124283258 -19999231 + MER33 DNA MER1_type 1 122 -2463 387 0 0 0 chr12 124283258 124283301 -19999188 + (CA)n Simple_repeat Simple_repeat 2 44 0 986 201 26 82 chr12 124283301 124283379 -19999110 + MER33 DNA MER1_type 122 203 -2382 1879 137 3 0 chr12 124283379 124283663 -19998826 + AluJb SINE Alu 21 305 -7 986 201 26 82 chr12 124283663 124283810 -19998679 + MER33 DNA MER1_type 203 324 0 1582 201 30 6 chr12 124283818 124284151 -19998338 + MER58B DNA MER1_type 1 341 0 370 263 131 0 chr12 124284298 124284435 -19998054 - MIR SINE MIR -25 237 83 511 214 29 0 chr12 124284964 124285067 -19997422 + MIR SINE MIR 49 154 -108 208 227 53 67 chr12 124285079 124285154 -19997335 + MIR SINE MIR 127 200 -62 1055 244 87 64 chr12 124285309 124285747 -19996742 + MLT1J2 LTR MaLR 1 448 -2 1546 194 100 7 chr12 124285822 124286132 -19996357 + MLT1F LTR MaLR 204 542 0 788 285 95 4 chr12 124286133 124286386 -19996103 - LTR16C LTR ERVL -140 351 76 1748 210 12 3 chr12 124287351 124287685 -19994804 + MER58B DNA MER1_type 1 337 -4 2209 83 0 38 chr12 124288258 124288572 -19993917 + AluY SINE Alu 1 302 -9 1294 251 33 30 chr12 124288657 124289019 -19993470 - MSTD LTR MaLR -33 363 1 391 299 28 23 chr12 124289116 124289333 -19993156 - L1ME LINE L1 -346 5775 5558 297 0 0 0 chr12 124289366 124289399 -19993090 + (CA)n Simple_repeat Simple_repeat 1 33 0 1427 250 101 25 chr12 124289399 124290165 -19992324 - L2 LINE L2 -6 3307 2492 359 113 50 0 chr12 124290165 124290245 -19992244 + (TGGA)n Simple_repeat Simple_repeat 3 86 0 355 238 27 116 chr12 124290388 124290535 -19991954 - MIR SINE MIR -76 186 53 485 276 163 27 chr12 124291082 124291303 -19991186 + MIR SINE MIR 11 261 -1 180 234 106 0 chr12 124292655 124292702 -19989787 - L2 LINE L2 0 3313 3262 416 289 27 9 chr12 124293358 124293488 -19989001 - MIR SINE MIR -35 173 40 1382 225 52 65 chr12 124293679 124294142 -19988347 - LTR16A1 LTR ERVL 0 457 1 260 326 11 0 chr12 124294378 124294467 -19988022 + L1ME4a LINE L1 5727 5816 -305 1353 253 81 40 chr12 124294498 124294562 -19987927 + L2 LINE L2 2596 2656 -657 2150 208 22 78 chr12 124294562 124295149 -19987340 - MLT2B3 LTR ERVL 0 554 1 1353 253 81 40 chr12 124295149 124295554 -19986935 + L2 LINE L2 2656 3100 -213 420 20 0 0 chr12 124295554 124295603 -19986886 + (CA)n Simple_repeat Simple_repeat 2 50 0 1353 253 81 40 chr12 124295603 124295826 -19986663 + L2 LINE L2 3100 3313 0 348 256 111 20 chr12 124295887 124296086 -19986403 + L1ME4a LINE L1 5882 6098 -23 247 221 8 47 chr12 124296351 124296478 -19986011 + GA-rich Low_complexity Low_complexity 1 122 0 * 451 176 0 28 chr12 124296450 124296558 -19985931 + G-rich Low_complexity Low_complexity 3 107 0 366 277 75 43 chr12 124296839 124297027 -19985462 - MIR SINE MIR -66 196 3 701 272 123 0 chr12 124297512 124297707 -19984782 - MIR SINE MIR -15 247 29 755 277 24 66 chr12 124298165 124298454 -19984035 + Charlie8 DNA MER1_type 4 280 -2137 3754 67 1 4 chr12 124298465 124298924 -19983565 - MLT2A2 LTR ERVL 0 446 1 204 40 0 0 chr12 124300089 124300114 -19982375 + (T)n Simple_repeat Simple_repeat 1 25 0 404 215 0 0 chr12 124300483 124300562 -19981927 + MIR3 SINE MIR 81 159 -49 3021 245 72 19 chr12 124300992 124301912 -19980577 - MER69B DNA AcHobo -1 1225 257 6184 140 30 10 chr12 124302017 124303091 -19979398 + L1MC1 LINE L1 5237 6332 -1 508 222 19 0 chr12 124303093 124303201 -19979288 - MER69B DNA AcHobo -1097 129 20 235 295 213 29 chr12 124303433 124303640 -19978849 - MIR SINE MIR -2 260 16 988 215 138 87 chr12 124303801 124304285 -19978204 - LTR33A LTR ERVL -8 515 7 180 325 66 30 chr12 124305040 124305206 -19977283 + L2 LINE L2 2890 3061 -252 1054 212 22 22 chr12 124305294 124305494 -19976995 + MER58A DNA MER1_type 1 203 -2217 387 0 0 0 chr12 124305494 124305537 -19976952 + (TAA)n Simple_repeat Simple_repeat 3 45 0 1054 212 22 22 chr12 124305537 124305558 -19976931 + MER58A DNA MER1_type 202 222 -2 26 82 0 0 chr12 124305644 124305705 -19976784 + AT_rich Low_complexity Low_complexity 1 61 0 452 234 39 47 chr12 124306030 124306158 -19976331 + L2 LINE L2 3187 3313 0 23 0 0 0 chr12 124306265 124306288 -19976201 + AT_rich Low_complexity Low_complexity 1 23 0 2017 113 38 20 chr12 124306293 124306586 -19975903 + AluSx SINE Alu 1 298 -14 3799 102 9 11 chr12 124306633 124307184 -19975305 - L1PA16 LINE L1 0 6166 5617 2221 131 14 0 chr12 124307184 124307588 -19974901 + L1PA16 LINE L1 5182 5590 -576 225 280 62 95 chr12 124307641 124308062 -19974427 + L2 LINE L2 2254 2660 -654 1417 248 90 27 chr12 124308650 124309093 -19973396 - MLT1J LTR MaLR -8 503 33 225 313 24 12 chr12 124309259 124309342 -19973147 - L2 LINE L2 -1 3271 3188 25 0 0 0 chr12 124309589 124309614 -19972875 + AT_rich Low_complexity Low_complexity 1 25 0 2084 124 0 10 chr12 124311177 124311468 -19971021 + AluSx SINE Alu 1 288 -24 303 264 44 11 chr12 124311483 124311574 -19970915 + L1MC4 LINE L1 6607 6700 -1342 2065 249 47 19 chr12 124311575 124312146 -19970343 + L1ME2 LINE L1 5569 6155 -9 209 116 47 23 chr12 124312152 124312195 -19970294 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 384 268 0 47 chr12 124312204 124312331 -19970158 + L2 LINE L2 2930 3050 -263 732 294 119 28 chr12 124312522 124312719 -19969770 + LTR33 LTR ERVL 40 217 -304 1031 159 103 0 chr12 124312719 124312914 -19969575 + MER20 DNA MER1_type 1 215 -4 732 294 119 28 chr12 124312914 124313151 -19969338 + LTR33 LTR ERVL 217 514 -7 2369 135 21 56 chr12 124313284 124313751 -19968738 - L1MA10 LINE L1 -2 6332 5882 206 289 26 0 chr12 124313805 124313881 -19968608 - MIR SINE MIR -77 131 54 253 328 94 6 chr12 124314140 124314320 -19968169 + MIR SINE MIR 63 258 -4 375 196 10 6 chr12 124314714 124314815 -19967674 - L1MB1 LINE L1 -212 5956 5855 1783 154 13 26 chr12 124314840 124315152 -19967337 + AluJb SINE Alu 1 308 -4 217 241 19 0 chr12 124315386 124315440 -19967049 + MIR SINE MIR 126 180 -82 2342 45 11 0 chr12 124315446 124315756 -19966733 - L1P3 LINE L1 -606 5548 5236 648 48 12 0 chr12 124315756 124315819 -19966670 + L1PA7 LINE L1 6067 6150 -4 261 296 46 53 chr12 124315942 124316094 -19966395 - HAL1b LINE L1 0 1348 1198 240 270 16 0 chr12 124316158 124316221 -19966268 + MIR SINE MIR 77 140 -122 1505 204 43 70 chr12 124316233 124316650 -19965839 - MLT1C LTR MaLR -9 458 53 181 319 97 9 chr12 124316699 124316812 -19965677 + MIR SINE MIR 138 260 -2 337 317 43 32 chr12 124317407 124317593 -19964896 + MIR3 SINE MIR 7 194 -14 737 141 23 17 chr12 124318300 124318477 -19964012 + CT-rich Low_complexity Low_complexity 1 178 0 958 270 79 49 chr12 124318634 124319105 -19963384 - LTR16C LTR ERVL 0 491 7 388 293 41 20 chr12 124319106 124319253 -19963236 - MIR SINE MIR -105 157 8 577 264 39 11 chr12 124319528 124319706 -19962783 + MIR SINE MIR 80 262 0 628 283 69 33 chr12 124320014 124320535 -19961954 + L2 LINE L2 2639 3169 -144 815 118 8 0 chr12 124320671 124320790 -19961699 + MER20 DNA MER1_type 95 214 -5 421 242 17 33 chr12 124320798 124320918 -19961571 + L2 LINE L2 3192 3309 -4 198 0 0 0 chr12 124321372 124321394 -19961095 + (A)n Simple_repeat Simple_repeat 1 22 0 184 296 28 14 chr12 124321990 124322061 -19960428 - L2 LINE L2 -1 3312 3241 467 246 22 8 chr12 124322100 124322234 -19960255 + MIR SINE MIR 49 184 -78 200 211 0 0 chr12 124322367 124322405 -19960084 - L2 LINE L2 -19 3253 3216 284 323 30 20 chr12 124322455 124322691 -19959798 + MLT1J2 LTR MaLR 3 240 -169 391 289 14 28 chr12 124322704 124322846 -19959643 + LTR16C LTR ERVL 308 447 -44 180 0 0 0 chr12 124322949 124322969 -19959520 + (A)n Simple_repeat Simple_repeat 1 20 0 626 257 7 0 chr12 124323040 124323176 -19959313 + MLT1I LTR MaLR 258 394 -15 349 344 11 38 chr12 124323185 124323368 -19959121 - MIR SINE MIR -81 181 4 866 219 128 76 chr12 124323792 124323916 -19958573 + LTR16C LTR ERVL 189 305 -186 697 132 63 69 chr12 124323916 124324047 -19958442 + MER53 DNA DNA 2 133 -56 2238 116 0 0 chr12 124324047 124324341 -19958148 + AluSg SINE Alu 1 294 -16 697 132 63 69 chr12 124324341 124324398 -19958091 + MER53 DNA DNA 133 189 0 866 219 128 76 chr12 124324398 124324561 -19957928 + LTR16C LTR ERVL 305 491 0 4624 153 27 44 chr12 124324645 124324911 -19957578 + L1MB1 LINE L1 5079 5348 -820 2207 132 0 0 chr12 124324911 124325214 -19957275 + AluSx SINE Alu 3 305 -7 4624 153 27 44 chr12 124325214 124326033 -19956456 + L1MB1 LINE L1 5348 6168 0 471 316 57 10 chr12 124326382 124326591 -19955898 + MIR SINE MIR 10 228 -34 331 290 70 38 chr12 124328439 124328625 -19953864 - MIR SINE MIR -40 222 31 1714 39 0 0 chr12 124328736 124328943 -19953546 - L1PA4 LINE L1 0 6155 5949 8182 21 2 2 chr12 124328943 124329918 -19952571 + L1P LINE L1 2314 3288 -2858 249 250 88 0 chr12 124330018 124330098 -19952391 - MER117 DNA MER1_type -108 89 3 499 256 87 50 chr12 124330809 124331051 -19951438 + MLT1L LTR MaLR 363 613 -2 401 263 0 0 chr12 124331291 124331390 -19951099 + MLT1J LTR MaLR 6 104 -407 247 43 0 64 chr12 124331390 124331437 -19951052 + (TAAAAA)n Simple_repeat Simple_repeat 5 48 0 719 253 106 44 chr12 124331459 124331826 -19950663 + MLT1J LTR MaLR 120 509 -2 258 32 0 0 chr12 124332055 124332086 -19950403 + (TC)n Simple_repeat Simple_repeat 2 32 0 663 282 37 16 chr12 124332653 124332841 -19949648 - LTR16A LTR ERVL -30 420 229 215 217 0 0 chr12 124333036 124333082 -19949407 - L2 LINE L2 0 3313 3268 197 103 0 0 chr12 124333692 124333721 -19948768 + MIR SINE MIR 116 144 -118 1022 288 98 20 chr12 124333807 124334353 -19948136 + L2 LINE L2 2464 3054 -259 1916 155 6 22 chr12 124334373 124334690 -19947799 - AluJo SINE Alu 0 312 1 230 98 24 24 chr12 124334713 124334754 -19947735 + (TCTCC)n Simple_repeat Simple_repeat 5 45 0 695 149 29 11 chr12 124334756 124334931 -19947558 + CT-rich Low_complexity Low_complexity 1 178 0 311 289 0 0 chr12 124335037 124335113 -19947376 + L2 LINE L2 3227 3302 -11 327 259 12 0 chr12 124335417 124335498 -19946991 - MIR3 SINE MIR -22 186 105 210 298 170 21 chr12 124335767 124335861 -19946628 + L2 LINE L2 3201 3308 -5 22 0 0 0 chr12 124335996 124336018 -19946471 + AT_rich Low_complexity Low_complexity 1 22 0 707 269 34 77 chr12 124336364 124336662 -19945827 + MER102b DNA MER1_type 27 311 -30 388 334 13 4 chr12 124336694 124336824 -19945665 - MIR SINE MIR -64 144 16 1479 223 25 66 chr12 124336864 124337349 -19945140 - MLT1C LTR MaLR -2 465 1 180 200 0 0 chr12 124337579 124337619 -19944870 + (TAA)n Simple_repeat Simple_repeat 2 41 0 574 275 16 11 chr12 124337621 124337810 -19944679 - MIR SINE MIR -58 204 15 383 267 78 44 chr12 124338444 124338650 -19943839 + HAL1 LINE L1 1246 1458 -1049 466 227 85 0 chr12 124338866 124339007 -19943482 - MIR SINE MIR -32 230 78 536 45 0 0 chr12 124339263 124339329 -19943160 + THE1A LTR MaLR 1 66 -289 6578 101 7 2 chr12 124339333 124340212 -19942277 + THE1A-int LTR MaLR 698 1580 0 2701 99 0 0 chr12 124340212 124340567 -19941922 + THE1A LTR MaLR 1 355 0 645 299 80 50 chr12 124340650 124341397 -19941092 + L1ME4a LINE L1 5328 6097 -24 699 249 21 7 chr12 124341398 124341581 -19940908 + MLT1I LTR MaLR 2 191 -238 562 151 0 92 chr12 124341609 124341728 -19940761 + MLT1I LTR MaLR 298 405 -4 2231 133 0 0 chr12 124341740 124342041 -19940448 - AluSx SINE Alu -11 301 1 1751 163 64 10 chr12 124342124 124342419 -19940070 + AluJb SINE Alu 2 312 0 269 350 8 16 chr12 124342553 124342676 -19939813 + MIR SINE MIR 2 123 -139 321 252 98 24 chr12 124342749 124342872 -19939617 + MER94 DNA DNA 3 134 0 610 248 121 0 chr12 124342875 124343032 -19939457 - MER5B DNA MER1_type 0 178 3 864 183 18 91 chr12 124343269 124343312 -19939177 + MER20 DNA MER1_type 17 62 -157 1458 168 6 98 chr12 124343312 124343639 -19938850 - AluJo SINE Alu -15 297 1 864 183 18 91 chr12 124343639 124343814 -19938675 + MER20 DNA MER1_type 62 219 0 207 254 17 17 chr12 124344308 124344367 -19938122 + GA-rich Low_complexity Low_complexity 2 60 0 321 285 4 4 chr12 124344367 124344536 -19937953 + (TGGA)n Simple_repeat Simple_repeat 1 206 -60 249 57 0 0 chr12 124344536 124344571 -19937918 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 321 285 4 4 chr12 124344571 124344633 -19937856 + (TGGA)n Simple_repeat Simple_repeat 205 266 0 581 235 12 19 chr12 124344763 124344925 -19937564 + MER5B DNA MER1_type 15 175 -3 450 264 50 70 chr12 124345057 124345258 -19937231 + MIR SINE MIR 25 221 -41 607 222 18 12 chr12 124345317 124345484 -19937005 - MIR SINE MIR 0 262 95 508 181 8 15 chr12 124345500 124345633 -19936856 + (TGGA)n Simple_repeat Simple_repeat 4 135 0 245 89 22 0 chr12 124345660 124345705 -19936784 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 291 330 18 9 chr12 124346082 124346191 -19936298 - L2 LINE L2 -1 3271 3162 443 270 88 7 chr12 124346877 124347025 -19935464 + MIR SINE MIR 37 196 -66 201 171 0 0 chr12 124347062 124347097 -19935392 + (TTA)n Simple_repeat Simple_repeat 2 36 0 674 234 7 0 chr12 124347232 124347373 -19935116 - MER69 DNA AcHobo -2384 142 1 207 88 0 0 chr12 124347381 124347415 -19935074 + (T)n Simple_repeat Simple_repeat 1 34 0 220 220 0 34 chr12 124347870 124347929 -19934560 + G-rich Low_complexity Low_complexity 1 57 0 189 318 82 51 chr12 124348249 124348504 -19933985 + L2 LINE L2 2623 2885 -429 1876 172 3 0 chr12 124348577 124348880 -19933609 - AluJb SINE Alu -8 304 1 279 257 14 0 chr12 124349113 124349183 -19933306 + L2 LINE L2 3237 3307 -6 2531 165 52 12 chr12 124350252 124350737 -19931752 + L1MB3 LINE L1 5679 6182 -1 1684 188 3 10 chr12 124350781 124351095 -19931394 + AluJo SINE Alu 1 312 0 211 158 18 18 chr12 124352447 124352504 -19929985 + CT-rich Low_complexity Low_complexity 1 57 0 237 273 150 42 chr12 124352953 124353119 -19929370 + MIR SINE MIR 19 197 -62 204 175 12 50 chr12 124353152 124353232 -19929257 + (CATA)n Simple_repeat Simple_repeat 3 79 0 541 33 411 0 chr12 124353348 124353438 -19929051 + L1PA16 LINE L1 6029 6155 -11 213 207 17 35 chr12 124353650 124353708 -19928781 - MIR SINE MIR -171 91 35 188 256 0 0 chr12 124354290 124354329 -19928160 - MIR SINE MIR -3 259 221 258 81 0 0 chr12 124354347 124354384 -19928105 + (TG)n Simple_repeat Simple_repeat 2 38 0 912 223 166 92 chr12 124354388 124354899 -19927590 - MLT1H LTR MaLR 0 549 1 1199 280 59 36 chr12 124354924 124355402 -19927087 - L2 LINE L2 0 3313 2825 324 260 110 56 chr12 124355407 124355571 -19926918 - MIR3 SINE MIR -76 132 2 1465 68 26 0 chr12 124355901 124356093 -19926396 - L1PA13 LINE L1 -1 6162 5966 838 302 134 17 chr12 124356333 124357008 -19925481 - L2 LINE L2 0 3313 2561 1918 139 4 0 chr12 124357008 124357281 -19925208 + AluSq SINE Alu 1 274 -39 343 316 52 15 chr12 124357430 124357566 -19924923 - L2 LINE L2 -217 3055 2915 205 226 19 0 chr12 124358481 124358534 -19923955 + L2 LINE L2 3219 3272 0 986 110 0 28 chr12 124358740 124358922 -19923567 + (GGGAA)n Simple_repeat Simple_repeat 4 180 0 414 175 18 48 chr12 124358922 124359088 -19923401 + GA-rich Low_complexity Low_complexity 4 164 0 219 233 0 35 chr12 124359101 124359187 -19923302 + (CGGGA)n Simple_repeat Simple_repeat 3 85 0 508 222 19 0 chr12 124359946 124360054 -19922435 + MER69 DNA AcHobo 20 129 -1097 3003 174 58 18 chr12 124360056 124360734 -19921755 - L1MC1 LINE L1 -1 6332 5628 1853 128 0 50 chr12 124360877 124361174 -19921315 - AluSx SINE Alu -30 282 1 452 281 150 7 chr12 124361213 124361366 -19921123 - MER5A DNA MER1_type -2 187 13 238 288 0 0 chr12 124361616 124361696 -19920793 + C-rich Low_complexity Low_complexity 1 80 0 245 89 22 0 chr12 124362366 124362411 -19920078 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 508 181 8 15 chr12 124362437 124362570 -19919919 + (TCCA)n Simple_repeat Simple_repeat 4 135 0 600 228 18 12 chr12 124362586 124362753 -19919736 + MIR SINE MIR 95 262 0 435 257 50 74 chr12 124362812 124363014 -19919475 - MIR SINE MIR -41 221 25 462 264 19 19 chr12 124363146 124363305 -19919184 - MER5B DNA MER1_type -3 175 17 307 341 0 0 chr12 124363426 124363514 -19918975 + C-rich Low_complexity Low_complexity 1 88 0 1774 196 26 35 chr12 124364398 124364775 -19917714 + MLT1A2 LTR MaLR 1 374 0 3000 164 39 35 chr12 124364799 124365164 -19917325 + L1MC2 LINE L1 5734 6103 -241 1819 135 3 85 chr12 124365164 124365504 -19916985 + AluJo SINE Alu 1 312 0 3000 164 39 35 chr12 124365504 124365734 -19916755 + L1MC2 LINE L1 6103 6331 -13 380 326 33 17 chr12 124366025 124366206 -19916283 - LTR16C LTR ERVL 0 491 308 262 281 49 0 chr12 124366562 124366644 -19915845 - Charlie7 DNA MER1_type -2522 90 5 4820 109 7 9 chr12 124366764 124367403 -19915086 + L1MC1 LINE L1 5434 6073 -260 2203 135 43 0 chr12 124367403 124367752 -19914737 - THE1B LTR MaLR 0 364 1 4820 109 7 9 chr12 124367752 124367799 -19914690 + L1MC1 LINE L1 6073 6119 -214 407 194 97 0 chr12 124368477 124368570 -19913919 + MER5A DNA MER1_type 4 105 -84 313 232 12 12 chr12 124368800 124368882 -19913607 - MER113 DNA MER1_type? -109 412 331 457 225 155 14 chr12 124369216 124369358 -19913131 - MER117 DNA MER1_type -4 193 32 820 202 163 30 chr12 124369522 124369928 -19912561 + L1M4 LINE L1 2800 3259 -2887 1231 278 87 29 chr12 124369973 124370625 -19911864 + L1M4 LINE L1 3329 4018 -2128 2185 133 33 3 chr12 124370702 124371034 -19911455 - L1PA16 LINE L1 -20 6146 5805 422 242 180 8 chr12 124371217 124371345 -19911144 + MLT1K LTR MaLR 109 258 -330 974 251 73 33 chr12 124371802 124372132 -19910357 + MLT1K LTR MaLR 242 584 -4 746 225 74 1 chr12 124372423 124372637 -19909852 - MIR SINE MIR -17 245 17 416 260 53 7 chr12 124372961 124373081 -19909408 + Charlie7 DNA MER1_type 574 704 -1908 989 259 59 6 chr12 124373081 124373402 -19909087 + MER46C DNA MER2_type 1 338 0 416 260 53 7 chr12 124373402 124373431 -19909058 + Charlie7 DNA MER1_type 704 730 -1882 262 238 12 12 chr12 124373403 124373487 -19909002 + Charlie7 DNA MER1_type 2512 2595 -17 * 1817 173 0 17 chr12 124373634 124373929 -19908560 - AluJo SINE Alu -16 296 7 312 230 23 29 chr12 124374014 124374188 -19908301 + GA-rich Low_complexity Low_complexity 2 174 0 352 69 69 35 chr12 124374425 124374483 -19908006 + L1PA6 LINE L1 6089 6148 -6 2627 241 30 18 chr12 124374517 124375194 -19907295 + L1MC4a LINE L1 7123 7807 -1 855 234 127 61 chr12 124375227 124375753 -19906736 + L1ME4a LINE L1 5504 6064 -57 402 295 6 27 chr12 124376020 124376203 -19906286 + GA-rich Low_complexity Low_complexity 2 180 0 * 474 320 0 0 chr12 124376077 124376255 -19906234 + A-rich Low_complexity Low_complexity 1 178 0 2151 108 34 3 chr12 124376659 124376955 -19905534 + AluSg SINE Alu 3 307 -3 255 270 142 34 chr12 124376955 124377159 -19905330 + L1ME4a LINE L1 5856 6081 -40 418 308 0 23 chr12 124377663 124377793 -19904696 + MIR3 SINE MIR 3 129 -79 400 308 30 0 chr12 124377848 124377981 -19904508 - MIR SINE MIR 0 262 126 228 323 53 23 chr12 124378042 124378175 -19904314 - MIR SINE MIR -70 192 56 184 111 0 0 chr12 124379388 124379415 -19903074 - L2 LINE L2 -25 3288 3262 240 178 0 0 chr12 124379562 124379607 -19902882 - L2 LINE L2 -4 3268 3224 207 309 49 0 chr12 124379838 124379919 -19902570 - L2 LINE L2 0 3272 3188 3470 89 0 0 chr12 124379947 124380409 -19902080 + L1PA5 LINE L1 5691 6152 -2 276 30 0 0 chr12 124380412 124380445 -19902044 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 2261 94 7 0 chr12 124380613 124380900 -19901589 + AluSq SINE Alu 1 289 -24 356 260 21 10 chr12 124380996 124381092 -19901397 + MIR SINE MIR 52 148 -60 668 223 38 11 chr12 124381177 124381361 -19901128 - MIR SINE MIR -1 261 73 1983 239 133 6 chr12 124381530 124382056 -19900433 - MLT1E LTR MaLR 0 593 1 1180 101 0 0 chr12 124382076 124382235 -19900254 + L1MA1 LINE L1 6144 6302 0 834 249 65 0 chr12 124382535 124382764 -19899725 - MIR SINE MIR -15 247 4 314 256 24 12 chr12 124382950 124383032 -19899457 + L2 LINE L2 3183 3265 -7 180 259 74 0 chr12 124383332 124383386 -19899103 - MIR SINE MIR -118 144 87 1074 235 29 14 chr12 124383390 124383642 -19898847 + MLT1H LTR MaLR 3 221 -225 596 211 74 48 chr12 124383674 124383976 -19898513 + MLT1H LTR MaLR 218 549 0 618 252 88 36 chr12 124384688 124384989 -19897500 - L2 LINE L2 -245 3068 2754 319 293 75 0 chr12 124385440 124385546 -19896943 + MIR3 SINE MIR 58 171 -37 375 257 17 36 chr12 124385615 124385760 -19896729 + L1ME LINE L1 5490 5606 -515 899 184 102 39 chr12 124385785 124385991 -19896498 + MER20 DNA MER1_type 1 219 0 523 284 12 18 chr12 124386158 124386327 -19896162 + MIR SINE MIR 14 181 -81 575 300 9 24 chr12 124386557 124386767 -19895722 - MIR SINE MIR -40 222 16 325 246 15 0 chr12 124386879 124386944 -19895545 - MER81 DNA DNA -43 71 6 545 222 24 8 chr12 124387287 124387413 -19895076 + MIR SINE MIR 42 169 -93 189 107 0 0 chr12 124387908 124387936 -19894553 + (A)n Simple_repeat Simple_repeat 1 28 0 747 229 108 5 chr12 124388545 124388768 -19893721 + MIR SINE MIR 17 262 0 300 264 13 7 chr12 124389443 124389597 -19892892 + (CCA)n Simple_repeat Simple_repeat 1 155 0 339 228 6 19 chr12 124389609 124389771 -19892718 + (CCA)n Simple_repeat Simple_repeat 1 160 0 412 300 83 26 chr12 124390030 124390260 -19892229 + MIR SINE MIR 20 262 0 1559 147 0 8 chr12 124390581 124390819 -19891670 - MER46A DNA MER2_type 0 236 1 2336 103 0 10 chr12 124391744 124392055 -19890434 + AluSg SINE Alu 1 308 -2 221 370 67 32 chr12 124392642 124392926 -19889563 - L2 LINE L2 -809 2505 2212 1995 146 0 0 chr12 124393110 124393391 -19889098 - AluJb SINE Alu -19 293 13 4145 142 6 6 chr12 124393399 124394052 -19888437 - L1PA16 LINE L1 -19 6147 5495 2262 94 3 0 chr12 124394052 124394339 -19888150 - AluY SINE Alu -23 288 1 1155 277 25 77 chr12 124394507 124394987 -19887502 - LTR16B LTR ERVL 0 464 10 21 0 0 0 chr12 124395123 124395144 -19887345 + AT_rich Low_complexity Low_complexity 1 21 0 1966 137 0 3 chr12 124395309 124395594 -19886895 - AluSx SINE Alu -23 289 6 1927 135 17 7 chr12 124395863 124396159 -19886330 + 7SLRNA srpRNA srpRNA 22 320 0 186 297 104 62 chr12 124396504 124396540 -19885949 + MIR SINE MIR 50 83 -179 2006 180 16 22 chr12 124396540 124396907 -19885582 - MLT1A1 LTR MaLR 0 365 1 186 297 104 62 chr12 124396907 124397062 -19885427 + MIR SINE MIR 83 249 -13 213 139 0 0 chr12 124397357 124397400 -19885089 + (GA)n Simple_repeat Simple_repeat 2 44 0 1585 214 60 46 chr12 124398307 124398761 -19883728 + L1ME3 LINE L1 5618 6077 -85 483 63 0 0 chr12 124398761 124398824 -19883665 + (CA)n Simple_repeat Simple_repeat 2 64 0 211 200 0 0 chr12 124398874 124398914 -19883575 + GA-rich Low_complexity Low_complexity 4 43 0 241 265 0 15 chr12 124398917 124398985 -19883504 - MIR SINE MIR -157 105 39 548 263 85 25 chr12 124399659 124399895 -19882594 + MIR SINE MIR 10 259 -3 232 220 40 0 chr12 124400077 124400127 -19882362 + L3 LINE CR1 1525 1576 -1 531 374 28 13 chr12 124400628 124401016 -19881473 - HERV16 LTR ERVL -772 4992 4599 1061 293 48 3 chr12 124401053 124401367 -19881122 - HERV16 LTR ERVL -1168 4486 4159 690 308 52 38 chr12 124401375 124401794 -19880695 - HERV16 LTR ERVL -1215 3781 3357 309 239 0 0 chr12 124401794 124401865 -19880624 - HERV16 LTR ERVL -4189 807 737 1415 351 33 17 chr12 124402071 124402769 -19879720 - HERV16 LTR ERVL -4285 711 3 1835 274 31 11 chr12 124402771 124403224 -19879265 - LTR16B LTR ERVL 0 464 3 226 363 12 25 chr12 124403245 124403325 -19879164 - L2 LINE L2 -24 3248 3170 617 165 58 0 chr12 124403502 124403605 -19878884 + Tigger3(Golem) DNA MER2_type 2921 3029 0 616 236 20 193 chr12 124403607 124403894 -19878595 - L2 LINE L2 -937 2377 2042 1383 193 0 13 chr12 124403894 124404133 -19878356 - MER46A DNA MER2_type 0 236 1 616 236 20 193 chr12 124404133 124404296 -19878193 - L2 LINE L2 -1272 2042 2093 2322 129 135 5 chr12 124404296 124404675 -19877814 + MSTA LTR MaLR 1 428 0 616 236 20 193 chr12 124404675 124404938 -19877551 - L2 LINE L2 -1220 2094 1787 243 236 0 0 chr12 124405147 124405219 -19877270 + (CA)n Simple_repeat Simple_repeat 1 72 0 732 274 59 102 chr12 124405836 124406278 -19876211 + MLT1K LTR MaLR 151 573 -15 206 319 193 8 chr12 124406615 124406734 -19875755 - MIR SINE MIR -118 144 4 354 312 129 15 chr12 124406743 124406945 -19875544 - MIR SINE MIR -6 256 32 182 372 124 16 chr12 124407204 124407333 -19875156 - L2 LINE L2 -257 3015 2873 585 293 27 5 chr12 124407336 124407524 -19874965 + MER117 DNA MER1_type 2 193 -4 556 226 154 18 chr12 124408090 124408311 -19874178 - MIR SINE MIR -1 261 11 1194 265 70 23 chr12 124409269 124409654 -19872835 - MLT1I LTR MaLR 0 409 7 554 297 158 10 chr12 124409720 124409922 -19872567 - MIR SINE MIR -14 248 17 369 267 37 41 chr12 124410076 124410245 -19872244 - MIR SINE MIR -51 211 40 476 257 29 0 chr12 124410548 124410688 -19871801 - MER117 DNA MER1_type -49 148 5 1513 185 165 53 chr12 124410688 124411179 -19871310 - MLT1H1 LTR MaLR 0 555 10 495 287 30 6 chr12 124411339 124411503 -19870986 - MIR SINE MIR -14 248 81 934 204 124 0 chr12 124411813 124411999 -19870490 + MER3 DNA MER1_type 1 209 0 183 114 0 0 chr12 124412844 124412879 -19869610 + (A)n Simple_repeat Simple_repeat 1 35 0 987 250 21 40 chr12 124412880 124413205 -19869284 + Charlie4a DNA MER1_type 62 380 -128 2536 82 5 217 chr12 124413205 124413607 -19868882 - Tigger3(Golem) DNA MER2_type -1 3028 2807 3330 46 5 0 chr12 124413607 124413992 -19868497 + L1PA7 LINE L1 5759 6149 -5 2536 82 5 217 chr12 124413992 124414221 -19868268 - Tigger3(Golem) DNA MER2_type -222 2807 2531 253 250 18 0 chr12 124414225 124414281 -19868208 - Tigger3(Golem) DNA MER2_type -2969 60 4 345 226 255 0 chr12 124414284 124414386 -19868103 + Charlie4a DNA MER1_type 378 505 -3 203 303 79 56 chr12 124414557 124414735 -19867754 - MIR SINE MIR -14 248 67 404 294 103 34 chr12 124414975 124415237 -19867252 + L2 LINE L2 2417 2696 -618 461 259 36 7 chr12 124415279 124415418 -19867071 + MLT1K LTR MaLR 445 587 -1 264 321 0 12 chr12 124415449 124415530 -19866959 + L2 LINE L2 3189 3268 -4 354 169 0 0 chr12 124415972 124416061 -19866428 + (TG)n Simple_repeat Simple_repeat 1 89 0 269 284 26 9 chr12 124416080 124416196 -19866293 + (TG)n Simple_repeat Simple_repeat 1 118 0 186 208 0 0 chr12 124416230 124416283 -19866206 + (TG)n Simple_repeat Simple_repeat 2 54 0 754 251 94 22 chr12 124416643 124416866 -19865623 + MIR SINE MIR 8 246 -16 467 340 64 58 chr12 124417007 124417351 -19865138 + L2 LINE L2 2912 3257 -15 200 241 19 19 chr12 124417377 124417431 -19865058 - MER5A DNA MER1_type 0 189 136 2406 68 3 10 chr12 124417443 124417750 -19864739 + AluY SINE Alu 1 305 -6 330 151 0 0 chr12 124417751 124417804 -19864685 - MER5A DNA MER1_type -111 78 26 3146 150 12 47 chr12 124417862 124418441 -19864048 + L1MA9 LINE L1 5729 6287 -25 23 68 0 0 chr12 124418442 124418486 -19864003 + AT_rich Low_complexity Low_complexity 1 44 0 190 133 0 0 chr12 124418654 124418684 -19863805 + MIR SINE MIR 106 135 -127 505 285 55 4 chr12 124418696 124418901 -19863588 + MIR3 SINE MIR 29 253 -9 1108 140 63 138 chr12 124419741 124419797 -19862692 - MER33 DNA MER1_type -2262 323 264 1522 171 36 21 chr12 124419797 124420077 -19862412 + AluJo SINE Alu 1 284 -28 405 0 0 0 chr12 124420087 124420132 -19862357 + (TAA)n Simple_repeat Simple_repeat 3 47 0 1108 140 63 138 chr12 124420132 124420193 -19862296 - MER33 DNA MER1_type -2330 255 191 1927 144 0 11 chr12 124420193 124420501 -19861988 + AluJb SINE Alu 1 305 0 1108 140 63 138 chr12 124420501 124420719 -19861770 - MER33 DNA MER1_type -2394 191 1 253 219 9 9 chr12 124420884 124420989 -19861500 + CT-rich Low_complexity Low_complexity 2 106 0 504 341 22 22 chr12 124421206 124421435 -19861054 + MIR SINE MIR 29 257 -5 1178 156 0 0 chr12 124421678 124421857 -19860632 - AluJb SINE Alu -5 307 129 507 60 0 0 chr12 124421945 124422012 -19860477 + (TGGA)n Simple_repeat Simple_repeat 3 69 0 2203 300 18 18 chr12 124422182 124423018 -19859471 + L1ME LINE L1 57 892 -5178 203 227 136 23 chr12 124423045 124423133 -19859356 + L3b LINE CR1 1260 1357 -226 235 288 54 9 chr12 124423302 124423413 -19859076 - MIR SINE MIR -65 197 82 2326 243 37 45 chr12 124423415 124424013 -19858476 - MLT1E LTR MaLR 0 593 1 22 0 0 0 chr12 124424253 124424275 -19858214 + AT_rich Low_complexity Low_complexity 1 22 0 355 246 35 105 chr12 124424628 124424799 -19857690 - MER5A DNA MER1_type -2 187 29 1017 192 39 10 chr12 124424834 124425037 -19857452 + MER3 DNA MER1_type 1 209 0 198 0 0 0 chr12 124425348 124425370 -19857119 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 432 225 27 18 chr12 124425519 124425630 -19856859 + MIR3 SINE MIR 82 193 -15 26 30 0 0 chr12 124425672 124425705 -19856784 + AT_rich Low_complexity Low_complexity 1 33 0 221 136 0 23 chr12 124425777 124425821 -19856668 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 928 287 176 7 chr12 124425978 124426392 -19856097 + MLT1K LTR MaLR 84 567 -21 2136 80 4 0 chr12 124426474 124426737 -19855752 - AluSc SINE Alu -13 296 33 21 71 0 0 chr12 124426745 124426787 -19855702 + AT_rich Low_complexity Low_complexity 1 42 0 581 340 4 21 chr12 124426808 124427043 -19855446 - MIR SINE MIR -1 261 31 492 294 29 7 chr12 124427103 124427239 -19855250 + L2 LINE L2 3134 3272 0 443 223 31 54 chr12 124428139 124428269 -19854220 + L2 LINE L2 2932 3058 -214 234 217 0 0 chr12 124428422 124428468 -19854021 + L2 LINE L2 3263 3308 -5 194 288 102 0 chr12 124428686 124428745 -19853744 + L2 LINE L2 2873 2937 -376 1556 195 0 64 chr12 124429072 124429400 -19853089 - AluJo SINE Alu -5 307 1 2146 126 7 0 chr12 124429472 124429765 -19852724 + AluSx SINE Alu 1 295 -17 621 264 58 6 chr12 124429991 124430165 -19852324 + MIR SINE MIR 44 226 -36 213 132 0 0 chr12 124431883 124431921 -19850568 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr12 124433019 124433040 -19849449 + AT_rich Low_complexity Low_complexity 1 21 0 201 273 0 52 chr12 124433576 124433653 -19848836 + GA-rich Low_complexity Low_complexity 4 76 0 251 154 0 19 chr12 124433680 124433732 -19848757 + GA-rich Low_complexity Low_complexity 3 53 0 21 71 0 0 chr12 124438181 124438223 -19844266 + AT_rich Low_complexity Low_complexity 1 42 0 638 250 27 38 chr12 124438254 124438438 -19844051 - MIR SINE MIR -4 258 77 662 236 120 58 chr12 124438838 124439063 -19843426 + MIR SINE MIR 12 250 -12 379 204 0 23 chr12 124439077 124439209 -19843280 + (ATG)n Simple_repeat Simple_repeat 2 130 0 218 282 243 19 chr12 124439254 124439357 -19843132 - MIR SINE MIR -63 145 20 488 243 37 7 chr12 124440035 124440171 -19842318 - MER117 DNA MER1_type -47 150 11 302 224 12 0 chr12 124440362 124440447 -19842042 + (TTCA)n Simple_repeat Simple_repeat 2 87 0 551 291 48 26 chr12 124440717 124440944 -19841545 - L2 LINE L2 -215 3057 2826 216 356 123 6 chr12 124440946 124441109 -19841380 + L2 LINE L2 2682 2863 -451 299 322 0 76 chr12 124441153 124441271 -19841218 + L2 LINE L2 3189 3297 -16 354 111 12 49 chr12 124441405 124441486 -19841003 + (GGGAA)n Simple_repeat Simple_repeat 3 80 0 348 279 82 14 chr12 124441765 124441919 -19840570 + MIR3 SINE MIR 26 191 -17 208 184 20 0 chr12 124441966 124442015 -19840474 + (TAA)n Simple_repeat Simple_repeat 1 50 0 661 264 34 17 chr12 124442038 124442216 -19840273 - MIR SINE MIR -71 191 11 523 269 67 39 chr12 124442519 124442727 -19839762 + MLT1K LTR MaLR 147 360 -228 363 237 133 30 chr12 124443221 124443356 -19839133 - MIR SINE MIR -66 196 48 2367 93 0 0 chr12 124443384 124443686 -19838803 - AluSc SINE Alu 0 309 8 320 208 130 13 chr12 124444306 124444383 -19838106 - L2 LINE L2 -4 3309 3224 241 362 94 15 chr12 124444388 124444653 -19837836 + L2 LINE L2 2687 2972 -342 424 253 12 16 chr12 124445154 124445324 -19837165 + MIR SINE MIR 21 254 -8 385 279 43 53 chr12 124445415 124445572 -19836917 + MIR SINE MIR 43 192 -65 911 260 113 33 chr12 124445729 124445950 -19836539 - MLT1J1 LTR MaLR -2 444 242 1209 195 27 18 chr12 124445950 124446171 -19836318 + MER58A DNA MER1_type 2 224 0 911 260 113 33 chr12 124446171 124446338 -19836151 - MLT1J1 LTR MaLR -204 242 25 2269 113 0 0 chr12 124446393 124446694 -19835795 + AluSx SINE Alu 1 301 -11 378 287 152 39 chr12 124446835 124447065 -19835424 - MIR SINE MIR 0 262 7 883 264 122 22 chr12 124447146 124447506 -19834983 - LTR33 LTR ERVL -7 514 119 1909 108 0 85 chr12 124448370 124448686 -19833803 + AluSc SINE Alu 1 289 -20 216 306 234 8 chr12 124448953 124449100 -19833389 + MIR SINE MIR 9 166 -42 194 216 0 0 chr12 124449589 124449626 -19832863 + L2 LINE L2 3217 3253 -19 676 220 48 18 chr12 124449694 124449862 -19832627 + MER117 DNA MER1_type 7 179 -18 1945 123 4 0 chr12 124449916 124450193 -19832296 + AluSx SINE Alu 35 312 0 192 138 0 0 chr12 124450248 124450277 -19832212 + MIR SINE MIR 126 154 -108 244 287 70 47 chr12 124450538 124450667 -19831822 + MLT1K LTR MaLR 12 143 -445 808 244 90 0 chr12 124450699 124450900 -19831589 + MER58A DNA MER1_type 6 224 0 255 294 163 15 chr12 124450900 124451068 -19831421 + MLT1K LTR MaLR 148 369 -219 351 313 17 0 chr12 124451648 124451763 -19830726 - MIR SINE MIR -79 183 67 1010 164 6 27 chr12 124452236 124452419 -19830070 - FRAM SINE Alu -4 172 1 781 119 0 0 chr12 124452578 124452679 -19829810 - FLAM_C SINE Alu -32 111 11 855 234 127 61 chr12 124453078 124453604 -19828885 - L1ME4a LINE L1 -57 6064 5504 2627 241 30 18 chr12 124453637 124454314 -19828175 - L1MC4a LINE L1 -1 7807 7123 352 69 69 35 chr12 124454348 124454406 -19828083 - L1PA6 LINE L1 -6 6148 6089 312 230 23 29 chr12 124454643 124454817 -19827672 + CT-rich Low_complexity Low_complexity 2 174 0 1817 173 0 17 chr12 124454902 124455197 -19827292 + AluJo SINE Alu 7 296 -16 262 238 12 12 chr12 124455344 124455428 -19827061 - Charlie7 DNA MER1_type -17 2595 2512 * 416 260 53 7 chr12 124455400 124455429 -19827060 - Charlie7 DNA MER1_type -1882 730 704 989 259 59 6 chr12 124455429 124455750 -19826739 - MER46C DNA MER2_type 0 338 1 416 260 53 7 chr12 124455750 124455870 -19826619 - Charlie7 DNA MER1_type -1908 704 574 746 225 74 1 chr12 124456194 124456408 -19826081 + MIR SINE MIR 17 245 -17 974 251 73 33 chr12 124456699 124457029 -19825460 - MLT1K LTR MaLR -4 584 242 422 242 180 8 chr12 124457486 124457614 -19824875 - MLT1K LTR MaLR -330 258 109 2185 133 33 3 chr12 124457797 124458129 -19824360 + L1PA16 LINE L1 5805 6146 -20 1231 278 87 29 chr12 124458206 124458858 -19823631 - L1M4 LINE L1 -2128 4018 3329 820 202 163 30 chr12 124458903 124459309 -19823180 - L1M4 LINE L1 -2887 3259 2800 457 225 155 14 chr12 124459473 124459615 -19822874 + MER117 DNA MER1_type 32 193 -4 313 232 12 12 chr12 124459949 124460031 -19822458 + MER113 DNA MER1_type? 331 412 -109 407 194 97 0 chr12 124460261 124460354 -19822135 - MER5A DNA MER1_type -84 105 4 279 0 0 0 chr12 124461346 124461377 -19821112 + (CA)n Simple_repeat Simple_repeat 1 31 0 2156 131 27 24 chr12 124461760 124462133 -19820356 - THE1C LTR MaLR 0 375 2 267 299 99 29 chr12 124462428 124462773 -19819716 + L1ME4a LINE L1 2788 3156 -2990 300 253 42 70 chr12 124463037 124463216 -19819273 + L1ME4a LINE L1 5298 5468 -695 1864 98 8 0 chr12 124463474 124463718 -19818771 + AluSx SINE Alu 63 308 -4 1845 166 7 3 chr12 124463719 124464021 -19818468 + MLT1B LTR MaLR 87 389 -1 239 235 0 25 chr12 124464150 124464231 -19818258 + L1ME4a LINE L1 5960 6038 -83 22 0 0 0 chr12 124464308 124464330 -19818159 + AT_rich Low_complexity Low_complexity 1 22 0 3757 50 0 4 chr12 124464447 124464910 -19817579 - L1PA5 LINE L1 0 6154 5694 851 223 54 9 chr12 124464962 124465186 -19817303 - MIR SINE MIR -27 235 2 485 241 50 48 chr12 124465665 124465838 -19816651 + L1MC4a LINE L1 5718 5837 -333 263 28 28 0 chr12 124465888 124465924 -19816565 + (TG)n Simple_repeat Simple_repeat 2 38 0 509 246 65 35 chr12 124465956 124466155 -19816334 + MIR SINE MIR 40 244 -18 454 313 39 35 chr12 124466772 124467002 -19815487 - MIR SINE MIR -3 259 29 245 195 0 0 chr12 124467325 124467366 -19815123 - MER103 DNA DNA -124 42 2 4277 130 12 46 chr12 124467801 124468562 -19813927 - L1MA4A LINE L1 0 6303 5569 1552 267 60 30 chr12 124470520 124471082 -19811407 - MLT1K LTR MaLR 0 588 10 350 267 38 0 chr12 124471544 124471649 -19810840 + MIR SINE MIR 81 189 -73 687 233 70 68 chr12 124471682 124471780 -19810709 - L2 LINE L2 -94 3219 3123 2633 58 0 0 chr12 124471780 124472088 -19810401 + AluY SINE Alu 1 308 -3 687 233 70 68 chr12 124472088 124472128 -19810361 - L2 LINE L2 -190 3123 3085 2450 96 0 13 chr12 124472128 124472442 -19810047 + AluSg SINE Alu 1 310 0 687 233 70 68 chr12 124472442 124472746 -19809743 - L2 LINE L2 -228 3085 2781 294 284 90 0 chr12 124474158 124474292 -19808197 + MIR SINE MIR 47 192 -70 447 177 0 0 chr12 124474411 124474490 -19807999 + L2 LINE L2 3234 3312 -1 194 327 0 0 chr12 124474576 124474631 -19807858 - MER5A DNA MER1_type -68 121 67 1999 146 23 3 chr12 124475585 124475887 -19806602 + AluSx SINE Alu 1 308 -4 481 188 210 17 chr12 124476120 124476296 -19806193 + L1ME3A LINE L1 5960 6169 -1 229 49 0 49 chr12 124476399 124476440 -19806049 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 617 236 15 44 chr12 124476477 124476680 -19805809 + L2 LINE L2 3106 3302 -11 199 239 30 45 chr12 124476804 124476871 -19805618 - L2 LINE L2 -56 3257 3192 722 178 0 23 chr12 124476966 124477095 -19805394 + FLAM_C SINE Alu 1 126 -7 928 217 100 59 chr12 124477306 124477476 -19805013 + MLT1B LTR MaLR 2 164 -226 1689 161 3 63 chr12 124477476 124477793 -19804696 + AluJb SINE Alu 1 298 -14 928 217 100 59 chr12 124477793 124478075 -19804414 + MLT1B LTR MaLR 164 390 0 198 209 0 0 chr12 124478316 124478359 -19804130 - L2 LINE L2 -1 3271 3229 401 135 9 144 chr12 124478802 124478868 -19803621 + MER5A DNA MER1_type 11 84 -105 1762 181 0 7 chr12 124478868 124479155 -19803334 + AluJb SINE Alu 1 285 -27 480 18 0 0 chr12 124479156 124479213 -19803276 + (GA)n Simple_repeat Simple_repeat 2 58 0 401 135 9 144 chr12 124479213 124479255 -19803234 + MER5A DNA MER1_type 83 106 -83 210 91 0 0 chr12 124479255 124479288 -19803201 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2267 92 4 0 chr12 124479290 124479571 -19802918 - AluSc SINE Alu -27 282 1 1106 228 9 9 chr12 124480905 124481129 -19801360 - MER58A DNA MER1_type 0 224 1 333 286 29 0 chr12 124481130 124481235 -19801254 - MIR3 SINE MIR -38 170 63 2518 78 0 0 chr12 124481937 124482243 -19800246 - AluY SINE Alu -5 306 1 342 265 35 31 chr12 124483311 124483608 -19798881 + MLT1J LTR MaLR 110 511 0 791 232 97 14 chr12 124483951 124484158 -19798331 - MER58A DNA MER1_type 0 224 1 587 242 13 13 chr12 124484229 124484382 -19798107 - MER103 DNA DNA -1 165 13 812 227 80 49 chr12 124484738 124485024 -19797465 - L1ME3A LINE L1 -8 6162 5868 371 158 0 13 chr12 124485030 124485106 -19797383 + CT-rich Low_complexity Low_complexity 2 76 0 1800 188 0 0 chr12 124485107 124485410 -19797079 - AluJb SINE Alu -9 303 1 400 260 68 55 chr12 124485482 124485628 -19796861 - L1ME3A LINE L1 -406 5764 5617 248 268 0 0 chr12 124485709 124485765 -19796724 - MER94 DNA DNA -77 57 2 807 224 29 113 chr12 124485767 124486233 -19796256 - L1ME3A LINE L1 -572 5598 5169 2236 23 11 0 chr12 124486246 124486510 -19795979 + L1PA4 LINE L1 5889 6155 0 403 103 0 17 chr12 124486693 124486751 -19795738 + MER3 DNA MER1_type 153 209 0 303 321 167 10 chr12 124486881 124487180 -19795309 + L2 LINE L2 2618 2963 -351 1693 165 20 44 chr12 124487246 124487650 -19794839 - MLT1C LTR MaLR 0 390 1 471 315 119 9 chr12 124487952 124488171 -19794318 + MIR SINE MIR 15 257 -5 272 241 57 133 chr12 124489788 124489946 -19792543 - MLT1H LTR MaLR 0 549 404 245 281 42 83 chr12 124490216 124490408 -19792081 - MLT1I LTR MaLR -200 209 69 577 325 99 19 chr12 124490473 124491072 -19791417 + L2 LINE L2 2430 3073 -199 1894 225 64 39 chr12 124491112 124491596 -19790893 + MLT1G1 LTR MaLR 99 594 -1 194 184 0 41 chr12 124491682 124491731 -19790758 + L2 LINE L2 3216 3262 -10 1262 219 104 32 chr12 124491939 124492343 -19790146 - MLT1C LTR MaLR -5 462 28 2325 81 0 13 chr12 124492357 124492682 -19789807 - AluSg SINE Alu 0 310 1 785 252 122 67 chr12 124492726 124493159 -19789330 - LTR33 LTR ERVL -64 457 1 342 276 26 14 chr12 124493257 124493414 -19789075 + MIR SINE MIR 37 192 -61 187 230 23 92 chr12 124493451 124493538 -19788951 + L2 LINE L2 3227 3307 -6 289 229 0 0 chr12 124493780 124493850 -19788639 - MLT1K LTR MaLR -31 557 488 248 244 77 103 chr12 124494139 124494295 -19788194 - MLT1K LTR MaLR -342 246 95 501 250 0 0 chr12 124494548 124494652 -19787837 - MER63 DNA MER1_type -277 784 681 386 303 148 54 chr12 124494852 124495225 -19787264 + L2 LINE L2 2824 3231 -41 284 320 50 20 chr12 124495271 124495371 -19787118 - L2 LINE L2 -12 3260 3158 498 330 79 5 chr12 124495960 124496175 -19786314 - MIR SINE MIR -29 233 3 256 200 25 50 chr12 124496271 124496351 -19786138 - L1MD2 LINE L1 -264 6095 6018 982 250 62 35 chr12 124497016 124497384 -19785105 + MLT1C LTR MaLR 53 430 -37 2725 117 35 30 chr12 124497480 124497906 -19784583 - MSTA LTR MaLR 0 428 1 379 233 43 17 chr12 124498229 124498345 -19784144 + MIR SINE MIR 110 228 -34 201 309 15 15 chr12 124498348 124498416 -19784073 - L2 LINE L2 0 3313 3246 2252 116 0 3 chr12 124498459 124498762 -19783727 - AluSx SINE Alu -10 302 1 404 287 81 104 chr12 124499180 124499574 -19782915 - L2 LINE L2 -1 3271 2887 307 313 25 25 chr12 124499679 124499842 -19782647 - MIR SINE MIR -10 252 90 203 382 10 0 chr12 124500081 124500183 -19782306 - MIR SINE MIR -88 174 72 190 315 46 39 chr12 124500537 124500667 -19781822 + MIR SINE MIR 84 214 -48 2446 99 0 0 chr12 124501118 124501431 -19781058 + AluSq SINE Alu 1 313 0 251 302 186 12 chr12 124501496 124501668 -19780821 - MIR SINE MIR -57 205 4 336 234 0 173 chr12 124502567 124502633 -19779856 - MER5B DNA MER1_type 0 178 102 2412 86 3 0 chr12 124502633 124502936 -19779553 + AluY SINE Alu 1 304 -7 336 234 0 173 chr12 124502936 124503047 -19779442 - MER5B DNA MER1_type -76 102 41 2083 227 103 15 chr12 124503047 124503589 -19778900 - MLT1E LTR MaLR -3 590 1 336 234 0 173 chr12 124503589 124503624 -19778865 - MER5B DNA MER1_type -137 41 2 182 122 61 41 chr12 124503693 124503742 -19778747 + MER5A DNA MER1_type 43 92 -97 * 288 294 35 0 chr12 124503717 124503802 -19778687 - MER5A DNA MER1_type -93 96 9 696 301 83 0 chr12 124504061 124504364 -19778125 + L2 LINE L2 2698 3031 -282 1225 272 100 4 chr12 124504672 124505294 -19777195 + L2 LINE L2 2611 3311 -2 309 299 22 6 chr12 124505389 124505501 -19776988 - MIR SINE MIR -68 140 30 631 232 164 0 chr12 124506028 124506205 -19776284 + MIR SINE MIR 47 252 -10 837 178 15 51 chr12 124506379 124506576 -19775913 - MER33 DNA MER1_type -134 190 1 214 250 167 0 chr12 124507139 124507211 -19775278 - MIR SINE MIR -10 252 169 260 240 83 42 chr12 124507211 124507307 -19775182 - Charlie8 DNA MER1_type -2233 184 85 5940 122 10 11 chr12 124507324 124507585 -19774904 - L1MC1 LINE L1 0 6333 6073 2203 135 43 0 chr12 124507585 124507934 -19774555 + THE1B LTR MaLR 1 364 0 5940 122 10 11 chr12 124507934 124508573 -19773916 - L1MC1 LINE L1 -260 6073 5434 262 281 49 0 chr12 124508693 124508775 -19773714 + Charlie7 DNA MER1_type 5 90 -2522 380 326 33 17 chr12 124509131 124509312 -19773177 + LTR16C LTR ERVL 308 491 0 3000 164 39 35 chr12 124509603 124509833 -19772656 - L1MC2 LINE L1 -13 6331 6103 1819 135 3 85 chr12 124509833 124510173 -19772316 - AluJo SINE Alu 0 312 1 3000 164 39 35 chr12 124510173 124510538 -19771951 - L1MC2 LINE L1 -241 6103 5734 1774 196 26 35 chr12 124510562 124510939 -19771550 - MLT1A2 LTR MaLR 0 374 1 315 329 36 18 chr12 124511637 124511804 -19770685 - MIR3 SINE MIR -6 202 33 261 182 36 0 chr12 124511964 124512019 -19770470 - MLT1K LTR MaLR -110 478 422 243 0 0 0 chr12 124512717 124512744 -19769745 + (A)n Simple_repeat Simple_repeat 1 27 0 2257 94 0 23 chr12 124513088 124513396 -19769093 + AluSx SINE Alu 9 309 -3 399 223 10 29 chr12 124513423 124513526 -19768963 - L1MC4a LINE L1 -1948 5860 5760 477 205 96 12 chr12 124513568 124513734 -19768755 + L2 LINE L2 2829 3008 -305 1671 121 123 134 chr12 124513741 124513970 -19768519 + L1MA4 LINE L1 5856 6079 -221 1742 120 6 123 chr12 124513970 124514312 -19768177 + AluSx SINE Alu 1 302 0 1671 121 123 134 chr12 124514312 124514529 -19767960 + L1MA4 LINE L1 6079 6297 -3 21 0 0 0 chr12 124514529 124514550 -19767939 + AT_rich Low_complexity Low_complexity 1 21 0 513 288 91 19 chr12 124514592 124514856 -19767633 + L2 LINE L2 3030 3312 -1 218 240 0 0 chr12 124514879 124514929 -19767560 - MIR SINE MIR -104 158 109 1736 152 35 17 chr12 124515003 124515293 -19767196 + AluJo SINE Alu 1 295 -17 262 333 167 4 chr12 124515329 124515557 -19766932 - L2 LINE L2 0 3272 3008 378 0 0 0 chr12 124516007 124516049 -19766440 + (TG)n Simple_repeat Simple_repeat 2 43 0 387 0 0 0 chr12 124516340 124516383 -19766106 + (TG)n Simple_repeat Simple_repeat 1 43 0 426 305 65 63 chr12 124516523 124516568 -19765921 - L2 LINE L2 -2 3270 3227 1700 218 32 44 chr12 124516568 124517041 -19765448 + MLT1C LTR MaLR 1 467 0 426 305 65 63 chr12 124517041 124517424 -19765065 - L2 LINE L2 -45 3227 2841 1888 163 28 36 chr12 124517435 124517496 -19764993 - MLT1A1 LTR MaLR -5 360 300 2228 119 0 0 chr12 124517496 124517791 -19764698 - AluSx SINE Alu -17 295 1 1888 163 28 36 chr12 124517791 124518092 -19764397 - MLT1A1 LTR MaLR -65 300 1 1666 109 23 138 chr12 124518753 124519101 -19763388 - AluYb8 SINE Alu 0 308 1 431 321 32 14 chr12 124519219 124519441 -19763048 - MIR SINE MIR -1 261 35 1822 171 104 56 chr12 124519887 124520081 -19762408 + MLT1D LTR MaLR 1 184 -321 1296 131 105 121 chr12 124520081 124520386 -19762103 + AluJb SINE Alu 1 300 -12 1822 171 104 56 chr12 124520386 124520672 -19761817 + MLT1D LTR MaLR 184 504 -1 614 283 87 38 chr12 124521052 124521317 -19761172 - L2 LINE L2 0 3272 2995 393 307 67 30 chr12 124521346 124521613 -19760876 - L2 LINE L2 -489 2825 2549 1611 240 38 22 chr12 124521647 124522092 -19760397 + MLT1C LTR MaLR 1 452 -15 525 260 68 17 chr12 124522117 124522352 -19760137 + L2 LINE L2 2569 2815 -499 320 292 54 0 chr12 124522391 124522521 -19759968 + L2 LINE L2 2924 3060 -253 242 229 0 0 chr12 124522556 124522604 -19759885 + MLT1D LTR MaLR 1 48 -457 398 301 30 30 chr12 124522606 124522772 -19759717 + L2 LINE L2 3112 3277 -36 1850 166 10 7 chr12 124522935 124523236 -19759253 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr12 124523263 124523285 -19759204 + AT_rich Low_complexity Low_complexity 1 22 0 394 320 89 20 chr12 124523285 124523564 -19758925 + L2 LINE L2 2770 3028 -285 369 0 0 0 chr12 124523564 124523605 -19758884 + (CA)n Simple_repeat Simple_repeat 2 42 0 394 320 89 20 chr12 124523605 124523815 -19758674 + L2 LINE L2 3028 3295 -18 374 231 87 133 chr12 124523887 124523999 -19758490 - MIR3 SINE MIR -4 204 103 2227 115 0 0 chr12 124523999 124524286 -19758203 + AluSx SINE Alu 1 287 -25 374 231 87 133 chr12 124524286 124524368 -19758121 - MIR3 SINE MIR -105 103 19 433 334 47 58 chr12 124524663 124525007 -19757482 + L2 LINE L2 2910 3249 -23 2091 111 4 14 chr12 124525157 124525464 -19757025 - AluSx SINE Alu 0 312 9 188 387 0 0 chr12 124525467 124525542 -19756947 + L2 LINE L2 2553 2627 -687 2135 168 16 18 chr12 124525550 124525936 -19756553 + MLT2D LTR ERVL 8 480 -40 222 171 0 0 chr12 124525936 124525977 -19756512 + (CA)n Simple_repeat Simple_repeat 2 42 0 276 262 25 16 chr12 124525981 124526103 -19756386 + (TA)n Simple_repeat Simple_repeat 2 124 0 260 208 0 0 chr12 124526104 124526152 -19756337 + MLT2C1 LTR ERVL 350 397 0 918 203 29 47 chr12 124526493 124526769 -19755720 - L1MC5 LINE L1 -46 7915 7645 1946 136 30 20 chr12 124526800 124527102 -19755387 - AluSq SINE Alu -8 305 1 373 235 111 13 chr12 124527103 124527175 -19755314 - L1MC5 LINE L1 -304 7657 7593 186 43 0 0 chr12 124527175 124527198 -19755291 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 373 235 111 13 chr12 124527198 124527278 -19755211 - L1MC5 LINE L1 -368 7593 7490 913 255 119 30 chr12 124527279 124527640 -19754849 - LTR16C LTR ERVL 0 491 99 2001 204 47 49 chr12 124527777 124528268 -19754221 - MLT1D LTR MaLR -4 501 12 738 166 40 7 chr12 124528280 124528431 -19754058 - L1MC5 LINE L1 -538 7423 7268 2284 113 6 10 chr12 124529678 124529989 -19752500 + AluSx SINE Alu 1 310 -2 229 242 16 0 chr12 124530049 124530111 -19752378 + (TA)n Simple_repeat Simple_repeat 1 63 0 401 185 259 0 chr12 124530978 124531086 -19751403 - LTR16C LTR ERVL -3 488 353 686 176 141 0 chr12 124531094 124531236 -19751253 + L1MB5 LINE L1 6002 6163 -11 918 107 186 17 chr12 124531246 124531423 -19751066 + L1PB2 LINE L1 5941 6147 -4 787 252 64 9 chr12 124531432 124531650 -19750839 - LTR16C LTR ERVL -139 352 123 203 98 0 49 chr12 124531749 124531790 -19750699 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 3546 99 50 2 chr12 124531799 124532316 -19750173 - L1PA15 LINE L1 -2 6163 5622 1294 92 0 73 chr12 124532316 124532522 -19749967 + L1PA15 LINE L1 5417 5607 -558 4416 135 23 39 chr12 124532646 124533000 -19749489 - L1PB4 LINE L1 -9 6147 5789 609 14 0 0 chr12 124533000 124533070 -19749419 + (TA)n Simple_repeat Simple_repeat 2 71 0 4416 135 23 39 chr12 124533070 124533390 -19749099 - L1PB4 LINE L1 -367 5789 5485 2002 130 3 3 chr12 124533390 124533674 -19748815 + AluJo SINE Alu 1 284 -28 4416 135 23 39 chr12 124533674 124533789 -19748700 - L1PB4 LINE L1 -671 5485 5370 636 268 92 39 chr12 124533788 124533942 -19748547 - L1ME LINE L1 -506 5656 5512 * 2184 77 11 28 chr12 124533942 124534267 -19748222 - AluY SINE Alu 0 320 1 636 268 92 39 chr12 124534267 124534607 -19747882 - L1ME LINE L1 -650 5512 5132 376 318 24 12 chr12 124534629 124534799 -19747690 + L1ME4a LINE L1 5747 5918 -203 633 316 32 8 chr12 124534816 124535063 -19747426 + L1MC4a LINE L1 5476 5728 -2080 509 230 36 14 chr12 124535064 124535203 -19747286 + L1MC4a LINE L1 5771 5912 -1896 182 319 42 0 chr12 124535334 124535406 -19747083 - MIR SINE MIR -78 184 110 22 35 0 0 chr12 124535610 124535639 -19746850 + AT_rich Low_complexity Low_complexity 1 29 0 217 214 51 122 chr12 124535660 124535758 -19746731 - MIR SINE MIR -70 192 102 468 265 26 26 chr12 124535847 124535998 -19746491 + MIR SINE MIR 56 206 -56 646 272 162 36 chr12 124536009 124536548 -19745941 + L2 LINE L2 2690 3297 -16 187 247 148 37 chr12 124537720 124537801 -19744688 + L2 LINE L2 2964 3053 -219 2482 47 0 10 chr12 124537805 124538104 -19744385 - AluY SINE Alu -15 296 1 267 208 52 26 chr12 124538262 124538339 -19744150 + L2 LINE L2 3234 3312 -1 432 241 12 6 chr12 124538403 124538573 -19743916 + (TGAA)n Simple_repeat Simple_repeat 1 171 0 361 243 0 0 chr12 124539273 124539343 -19743146 - L2 LINE L2 0 3272 3203 547 120 109 0 chr12 124539497 124539589 -19742900 + L1MB4 LINE L1 6069 6170 -10 769 234 100 57 chr12 124539733 124540032 -19742457 + MLT1C LTR MaLR 6 317 -150 243 345 29 7 chr12 124540470 124540609 -19741880 + MIR SINE MIR 117 258 -4 906 241 27 5 chr12 124540636 124540860 -19741629 + MIR SINE MIR 33 261 -1 373 277 132 43 chr12 124542074 124542392 -19740097 - MLT1J LTR MaLR -212 299 4 207 139 0 0 chr12 124542444 124542480 -19740009 + (A)n Simple_repeat Simple_repeat 1 36 0 231 365 12 0 chr12 124542775 124542860 -19739629 - L2 LINE L2 -65 3207 3122 220 338 0 0 chr12 124543310 124543390 -19739099 + MIR SINE MIR 183 262 0 3479 30 0 7 chr12 124544256 124544663 -19737826 - L1PA4 LINE L1 -5 6150 5747 603 219 33 48 chr12 124544694 124544904 -19737585 - MIR SINE MIR -15 247 41 193 258 34 56 chr12 124545124 124545213 -19737276 - MIR SINE MIR -70 192 106 954 255 70 38 chr12 124545492 124545935 -19736554 - LTR16B LTR ERVL 0 464 8 2703 164 24 40 chr12 124546041 124546535 -19735954 + MER66B LTR ERV1 1 486 0 543 311 34 13 chr12 124546848 124547086 -19735403 + MIR SINE MIR 13 255 -7 186 294 59 29 chr12 124547115 124547217 -19735272 + MIR SINE MIR 151 255 -7 601 224 95 14 chr12 124547301 124547511 -19734978 - LTR33 LTR ERVL -3 518 292 530 227 37 6 chr12 124547594 124547757 -19734732 - LTR33 LTR ERVL -353 168 1 186 314 51 22 chr12 124548179 124548316 -19734173 - L2 LINE L2 -376 2938 2798 249 33 0 0 chr12 124548318 124548348 -19734141 + (GA)n Simple_repeat Simple_repeat 1 30 0 198 71 0 0 chr12 124548705 124548733 -19733756 + (CGGGG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr12 124549018 124549040 -19733449 + AT_rich Low_complexity Low_complexity 1 22 0 425 306 103 13 chr12 124549070 124549245 -19733244 - MIR SINE MIR 0 262 60 1964 158 7 0 chr12 124549245 124549542 -19732947 + AluSx SINE Alu 1 299 -13 425 306 103 13 chr12 124549542 124549598 -19732891 - MIR SINE MIR -202 60 10 439 280 114 11 chr12 124550869 124551044 -19731445 - MIR SINE MIR -23 239 47 449 316 169 13 chr12 124551474 124551699 -19730790 - MIR SINE MIR 0 262 3 193 361 118 24 chr12 124551758 124552090 -19730399 - L2 LINE L2 -74 3198 2836 1504 197 32 93 chr12 124552095 124552320 -19730169 + L1ME2 LINE L1 5732 5916 -248 2097 141 10 0 chr12 124552320 124552625 -19729864 + AluSx SINE Alu 5 312 0 1504 197 32 93 chr12 124552625 124552860 -19729629 + L1ME2 LINE L1 5916 6164 0 200 200 0 25 chr12 124552860 124552900 -19729589 + GA-rich Low_complexity Low_complexity 2 40 0 219 279 44 0 chr12 124553586 124553654 -19728835 - MIR SINE MIR -146 116 46 300 267 0 23 chr12 124554093 124554179 -19728310 - L2 LINE L2 -4 3268 3185 276 99 0 0 chr12 124554226 124554278 -19728211 - L1ME LINE L1 -281 5840 5789 2520 36 7 3 chr12 124554278 124554579 -19727910 + L1PA7 LINE L1 5852 6153 -1 1046 89 64 50 chr12 124554596 124554798 -19727691 + L1MA8 LINE L1 6084 6288 -3 381 287 169 7 chr12 124554997 124555133 -19727356 + MIR SINE MIR 28 185 -77 1971 270 66 7 chr12 124555212 124555772 -19726717 - MLT1E LTR MaLR 0 593 1 542 276 31 0 chr12 124556131 124556258 -19726231 - L2 LINE L2 0 3313 3183 764 222 0 11 chr12 124556275 124556460 -19726029 + Zaphod DNA AcHobo 3359 3541 -490 332 280 0 28 chr12 124556474 124556581 -19725908 + L1ME2 LINE L1 6049 6152 -12 1641 261 16 22 chr12 124556631 124557136 -19725353 + Zaphod DNA AcHobo 3530 4031 0 385 279 81 15 chr12 124557178 124557314 -19725175 + MIR SINE MIR 16 160 -102 412 269 8 60 chr12 124557747 124557882 -19724607 - MER5A DNA MER1_type -24 165 27 1565 178 3 23 chr12 124557930 124558233 -19724256 - AluJo SINE Alu -7 305 9 893 211 108 10 chr12 124558466 124558670 -19723819 - MER58A DNA MER1_type 0 224 1 458 312 94 0 chr12 124558701 124558871 -19723618 + MIR SINE MIR 77 262 0 569 244 106 50 chr12 124558878 124558907 -19723582 + MIR SINE MIR 36 62 -200 2084 162 43 6 chr12 124558907 124559259 -19723230 + MLT1A1 LTR MaLR 1 365 0 569 244 106 50 chr12 124559259 124559409 -19723080 + MIR SINE MIR 62 225 -37 25 31 0 0 chr12 124559454 124559486 -19723003 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 124559549 124559570 -19722919 + AT_rich Low_complexity Low_complexity 1 21 0 385 263 92 2 chr12 124560424 124560549 -19721940 - MIR3 SINE MIR -3 205 70 524 233 0 33 chr12 124560669 124560789 -19721700 + L2 LINE L2 3192 3307 -6 461 284 198 58 chr12 124561120 124561479 -19721010 + L2 LINE L2 2905 3272 0 221 222 0 11 chr12 124561514 124561604 -19720885 + (TGAA)n Simple_repeat Simple_repeat 1 89 0 612 248 157 17 chr12 124561665 124561895 -19720594 + MIR SINE MIR 1 262 0 516 236 189 22 chr12 124561983 124562262 -19720227 + L1MC4 LINE L1 7380 7833 -209 396 230 130 0 chr12 124562504 124562604 -19719885 - MER117 DNA MER1_type -52 145 33 327 311 146 0 chr12 124562800 124562831 -19719658 + MIR SINE MIR 19 44 -218 252 0 0 0 chr12 124562831 124562859 -19719630 + (TG)n Simple_repeat Simple_repeat 2 29 0 327 311 146 0 chr12 124562859 124562991 -19719498 + MIR SINE MIR 44 205 -57 1220 234 136 30 chr12 124564773 124565244 -19717245 - LTR33 LTR ERVL 0 521 1 703 72 10 0 chr12 124565479 124565576 -19716913 - L1PA10 LINE L1 0 6168 6071 192 308 0 19 chr12 124565585 124565637 -19716852 - MER5A DNA MER1_type -38 151 101 1960 119 26 7 chr12 124565704 124566006 -19716483 + AluSx SINE Alu 1 308 -4 2129 84 24 3 chr12 124566040 124566336 -19716153 + AluY SINE Alu 1 302 -9 541 243 7 21 chr12 124566339 124566479 -19716010 - Charlie8 DNA MER1_type -2206 211 74 481 281 30 30 chr12 124566627 124566791 -19715698 + MIR3 SINE MIR 36 199 -9 2294 88 0 0 chr12 124567018 124567312 -19715177 + AluSq SINE Alu 1 294 -19 1901 141 10 10 chr12 124567317 124567623 -19714866 + AluJb SINE Alu 1 306 -6 1333 135 71 15 chr12 124567879 124568146 -19714343 + L1MA8 LINE L1 6010 6291 0 1459 182 20 24 chr12 124568631 124568928 -19713561 + AluJo SINE Alu 1 296 -16 599 263 84 6 chr12 124569115 124569294 -19713195 + L2 LINE L2 2625 2817 -497 1099 211 5 9 chr12 124569296 124569519 -19712970 - MER58A DNA MER1_type 0 224 3 502 200 21 0 chr12 124569536 124569631 -19712858 + MER5A DNA MER1_type 9 105 -84 461 321 21 27 chr12 124569780 124569967 -19712522 + L2 LINE L2 3118 3303 -10 998 260 149 46 chr12 124570195 124570610 -19711879 + MLT1G1 LTR MaLR 81 538 -57 1795 203 36 5 chr12 124570888 124571341 -19711148 - L1MB5 LINE L1 -1 6170 5680 730 201 164 0 chr12 124571350 124571509 -19710980 + MER20 DNA MER1_type 1 185 -34 774 184 7 20 chr12 124571511 124571658 -19710831 + FRAM SINE Alu 2 146 -30 260 184 41 0 chr12 124571677 124571726 -19710763 + MER20 DNA MER1_type 169 219 0 972 238 125 28 chr12 124572381 124572958 -19709531 - L2 LINE L2 -3 3310 2680 412 205 13 0 chr12 124572974 124573052 -19709437 + MER96 DNA MER1_type? 1 79 -96 1222 261 10 54 chr12 124573157 124573244 -19709245 + LTR16A LTR ERVL 77 166 -284 1053 102 25 25 chr12 124573244 124573401 -19709088 - L1PA10 LINE L1 -2 6166 6010 2537 187 27 34 chr12 124573408 124573970 -19708519 - MER74A LTR ERVL 0 558 1 1222 261 10 54 chr12 124573970 124574265 -19708224 + LTR16A LTR ERVL 172 450 0 747 220 97 111 chr12 124574452 124574883 -19707606 - L1ME3A LINE L1 -7 6163 5739 547 249 0 86 chr12 124574884 124575081 -19707408 + L1ME LINE L1 5338 5517 -647 238 161 12 235 chr12 124575400 124575562 -19706927 - L1M3e LINE L1 -5635 1395 1270 296 153 245 0 chr12 124576399 124576497 -19705992 + L1ME4a LINE L1 5996 6117 -4 362 265 29 29 chr12 124576595 124576697 -19705792 - L2 LINE L2 -32 3281 3180 387 351 70 57 chr12 124576745 124577147 -19705342 + ERVL LTR ERVL 4850 5256 -508 590 264 141 37 chr12 124577360 124577629 -19704860 + LTR16A1 LTR ERVL 1 297 -160 2473 233 105 37 chr12 124577667 124578052 -19704437 - L1ME2 LINE L1 -7 6157 5800 1673 160 10 14 chr12 124578052 124578346 -19704143 - AluJb SINE Alu -19 293 1 2473 233 105 37 chr12 124578346 124579256 -19703233 - L1ME2 LINE L1 -364 5800 4783 478 226 83 30 chr12 124579271 124579404 -19703085 + LTR16A1 LTR ERVL 318 457 0 235 311 116 43 chr12 124579406 124579570 -19702919 - L2 LINE L2 -129 3184 3009 * 367 350 26 21 chr12 124579548 124579742 -19702747 - L2 LINE L2 -2492 822 628 740 143 0 0 chr12 124579785 124579897 -19702592 - FRAM SINE Alu -12 164 53 606 306 103 24 chr12 124579897 124580276 -19702213 - L2 LINE L2 -2783 531 123 376 197 30 0 chr12 124580945 124581011 -19701478 - MER5A DNA MER1_type 0 189 122 336 244 186 49 chr12 124581032 124581195 -19701294 - HAL1 LINE L1 -1091 1416 1277 2936 121 52 11 chr12 124581195 124581731 -19700758 - L1PB1 LINE L1 0 6151 5594 336 244 186 49 chr12 124581731 124582209 -19700280 - HAL1 LINE L1 -1230 1277 633 378 333 82 16 chr12 124582294 124582477 -19700012 - HAL1 LINE L1 -2041 466 272 929 257 28 65 chr12 124582536 124582859 -19699630 - MLT1E LTR MaLR 0 593 283 1183 139 62 12 chr12 124582889 124583133 -19699356 + L1MA5A LINE L1 6037 6292 -5 248 256 51 13 chr12 124583211 124583289 -19699200 - HAL1 LINE L1 -2377 130 50 1710 163 3 7 chr12 124583544 124583845 -19698644 - AluJb SINE Alu -12 300 1 394 113 146 4 chr12 124584319 124584407 -19698082 + L1PB1 LINE L1 5664 5780 -371 276 100 0 0 chr12 124584407 124584447 -19698042 + (TG)n Simple_repeat Simple_repeat 2 41 0 2474 79 13 63 chr12 124584620 124584816 -19697673 + L1PB1 LINE L1 5778 5982 -169 2091 123 7 3 chr12 124584816 124585124 -19697365 + AluSx SINE Alu 1 309 -3 2474 79 13 63 chr12 124585124 124585135 -19697354 + L1PB1 LINE L1 5982 5992 -159 1998 132 0 0 chr12 124585135 124585430 -19697059 + AluSx SINE Alu 1 295 -17 2474 79 13 63 chr12 124585430 124585615 -19696874 + L1PB1 LINE L1 5992 6151 0 2002 125 0 3 chr12 124585807 124586102 -19696387 + AluSx SINE Alu 1 294 -18 2271 77 3 3 chr12 124586104 124586443 -19696046 + AluSp SINE Alu 1 313 0 394 309 20 1 chr12 124587344 124587503 -19694986 - MIR SINE MIR -65 143 21 360 0 0 0 chr12 124587834 124587874 -19694615 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 1413 155 10 72 chr12 124587874 124588164 -19694325 - AluSx SINE Alu -32 280 9 1909 124 10 10 chr12 124588661 124588960 -19693529 + AluSx SINE Alu 1 299 -13 2359 81 3 0 chr12 124588961 124589270 -19693219 + AluY SINE Alu 2 311 0 407 207 99 74 chr12 124589435 124589556 -19692933 - MER63 DNA MER1_type -311 751 2 671 256 92 18 chr12 124589567 124589794 -19692695 + MIR SINE MIR 19 262 0 189 250 0 62 chr12 124589972 124590020 -19692469 + MIR SINE MIR 59 103 -105 254 250 0 40 chr12 124590165 124590255 -19692234 + L2 LINE L2 3139 3308 -5 1194 189 115 57 chr12 124590434 124590783 -19691706 - MLT1A2 LTR MaLR -3 371 3 218 331 18 61 chr12 124590864 124591027 -19691462 + L2 LINE L2 2898 3053 -219 218 309 259 30 chr12 124591094 124591295 -19691194 + MIR SINE MIR 16 262 0 343 236 134 76 chr12 124591625 124591782 -19690707 + MIR SINE MIR 96 261 -1 2218 99 0 13 chr12 124591821 124592133 -19690356 + AluSx SINE Alu 1 308 -4 277 202 24 60 chr12 124592505 124592589 -19689900 - MLT1J LTR MaLR -302 209 129 915 206 34 10 chr12 124592597 124592801 -19689688 - L1 LINE L1 -1053 5093 4885 492 273 7 14 chr12 124593435 124593578 -19688911 - MIR SINE MIR -23 239 98 357 261 11 0 chr12 124593699 124593791 -19688698 + MIR SINE MIR 49 141 -67 441 280 0 0 chr12 124593846 124593946 -19688543 + MER5B DNA MER1_type 19 118 -60 918 152 51 0 chr12 124593955 124594113 -19688376 - AluJb SINE Alu -18 294 129 256 173 0 19 chr12 124594113 124594165 -19688324 + MER5B DNA MER1_type 128 178 0 902 166 139 27 chr12 124594249 124594444 -19688045 + L1MB7 LINE L1 5921 6130 -53 1963 118 3 3 chr12 124594444 124594733 -19687756 + AluSx SINE Alu 1 289 -23 902 166 139 27 chr12 124594733 124594793 -19687696 + L1MB7 LINE L1 6130 6182 -1 539 281 17 39 chr12 124594905 124595083 -19687406 + MIR SINE MIR 16 189 -73 21 0 0 0 chr12 124595221 124595242 -19687247 + GC_rich Low_complexity Low_complexity 1 21 0 303 293 20 0 chr12 124595733 124595832 -19686657 - L2 LINE L2 -310 2962 2862 371 319 95 0 chr12 124595996 124596112 -19686377 - L2 LINE L2 0 3272 3146 1700 121 63 32 chr12 124596813 124597128 -19685361 - THE1C LTR MaLR 0 375 51 336 121 17 0 chr12 124597135 124597193 -19685296 + MER5A DNA MER1_type 131 189 0 201 269 34 101 chr12 124597193 124597302 -19685187 - MER5A DNA MER1_type -88 101 1 463 261 0 0 chr12 124597469 124597557 -19684932 - MER81 DNA DNA -26 88 1 451 288 101 38 chr12 124597814 124598128 -19684361 + L1ME3A LINE L1 5596 5931 -231 2290 73 0 0 chr12 124598194 124598481 -19684008 + AluY SINE Alu 1 287 -24 213 233 0 0 chr12 124598834 124598877 -19683612 + L2 LINE L2 3181 3223 -49 484 256 16 31 chr12 124598909 124599038 -19683451 - MIR SINE MIR -57 151 25 1713 297 67 9 chr12 124599076 124599614 -19682875 + ERVL LTR ERVL 2619 3187 -2577 1690 263 44 40 chr12 124599623 124599773 -19682716 + ERVL LTR ERVL 4932 5080 -684 2094 108 169 37 chr12 124599773 124599933 -19682556 + MSTA LTR MaLR 1 138 -290 1971 108 0 39 chr12 124599933 124600239 -19682250 + AluSc SINE Alu 1 294 -15 2094 108 169 37 chr12 124600239 124600456 -19682033 + MSTA LTR MaLR 138 428 0 1690 263 44 40 chr12 124600456 124600898 -19681591 + ERVL LTR ERVL 5080 5526 -238 2027 207 180 24 chr12 124601142 124601721 -19680768 + LTR41 LTR ERVL 9 677 -96 272 232 15 26 chr12 124601814 124602011 -19680478 + CT-rich Low_complexity Low_complexity 1 194 0 594 0 0 0 chr12 124602460 124602526 -19679963 + (TG)n Simple_repeat Simple_repeat 2 67 0 447 206 11 39 chr12 124602535 124602715 -19679774 + GA-rich Low_complexity Low_complexity 6 180 0 1863 132 7 10 chr12 124603206 124603502 -19678987 - AluJo SINE Alu -17 295 1 268 189 38 0 chr12 124603721 124603774 -19678715 + MIR SINE MIR 96 150 -58 1008 283 4 12 chr12 124603806 124604057 -19678432 - MIR SINE MIR -5 257 9 202 255 21 0 chr12 124604291 124604338 -19678151 + L2 LINE L2 3201 3248 -24 216 250 307 0 chr12 124604456 124604544 -19677945 + L2 LINE L2 3138 3252 -20 2228 110 0 0 chr12 124604987 124605297 -19677192 + AluSg SINE Alu 1 310 0 372 309 73 66 chr12 124605506 124605823 -19676666 - L2 LINE L2 -6 3266 2948 1881 210 60 16 chr12 124606057 124606504 -19675985 + MLT1C LTR MaLR 1 467 0 2290 97 0 3 chr12 124606672 124606970 -19675519 + AluSx SINE Alu 1 297 -15 268 271 51 45 chr12 124607256 124607314 -19675175 - L1ME4a LINE L1 -4 6186 6130 680 158 71 39 chr12 124607314 124607441 -19675048 + FLAM_A SINE Alu 1 131 -2 268 271 51 45 chr12 124607441 124607559 -19674930 - L1ME4a LINE L1 -60 6130 6009 800 181 58 0 chr12 124607631 124607769 -19674720 + FRAM SINE Alu 1 146 -30 286 275 0 22 chr12 124607789 124607880 -19674609 + L1MC4 LINE L1 6614 6702 -1340 249 245 53 21 chr12 124607900 124607994 -19674495 - L1MC4 LINE L1 -1332 6710 6614 620 288 103 28 chr12 124608369 124608988 -19673501 - L1ME4a LINE L1 -373 5860 5191 575 276 89 78 chr12 124609001 124609021 -19673468 - L1ME4a LINE L1 -1071 5144 5126 1866 152 14 3 chr12 124609021 124609311 -19673178 + AluJb SINE Alu 1 293 -19 575 276 89 78 chr12 124609311 124609829 -19672660 - L1ME4a LINE L1 -1089 5126 4600 2349 115 0 0 chr12 124609836 124610141 -19672348 + AluSx SINE Alu 1 305 -7 438 167 11 11 chr12 124610317 124610407 -19672082 - MLT1J2 LTR MaLR -291 159 70 309 293 152 19 chr12 124610496 124610759 -19671730 - L1ME4a LINE L1 -1744 4471 4174 330 271 15 83 chr12 124610808 124610896 -19671593 + MIR SINE MIR 97 175 -87 2157 114 47 0 chr12 124610896 124611017 -19671472 + AluSx SINE Alu 1 115 -197 216 0 0 0 chr12 124611017 124611041 -19671448 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2157 114 47 0 chr12 124611041 124611217 -19671272 + AluSx SINE Alu 115 312 0 330 271 15 83 chr12 124611217 124611261 -19671228 + MIR SINE MIR 175 220 -42 263 275 18 18 chr12 124611314 124611423 -19671066 - L1ME4a LINE L1 -2135 4080 3972 972 111 0 0 chr12 124611441 124611567 -19670922 - FLAM_C SINE Alu -17 126 1 420 288 155 4 chr12 124611889 124612115 -19670374 - L1ME2 LINE L1 -279 5885 5626 720 249 90 32 chr12 124612129 124612539 -19669950 - MLT1H LTR MaLR 0 530 14 372 22 0 0 chr12 124612648 124612663 -19669826 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 372 22 0 0 chr12 124612663 124612708 -19669781 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 2241 112 3 0 chr12 124612749 124613045 -19669444 - AluSx SINE Alu -15 297 1 655 234 84 7 chr12 124613097 124613251 -19669238 - MER58A DNA MER1_type -19 205 40 5544 175 49 38 chr12 124613252 124613758 -19668731 + L1MC1 LINE L1 4815 5314 -1019 2365 88 7 0 chr12 124613758 124614054 -19668435 - AluSx SINE Alu -14 298 1 5544 175 49 38 chr12 124614054 124614806 -19667683 + L1MC1 LINE L1 5314 6095 -238 2318 128 38 16 chr12 124614806 124615173 -19667316 - THE1C LTR MaLR 0 375 1 5544 175 49 38 chr12 124615173 124615415 -19667074 + L1MC1 LINE L1 6095 6333 0 263 245 19 0 chr12 124615422 124615475 -19667014 - MER58A DNA MER1_type -170 54 1 448 273 102 23 chr12 124615979 124616195 -19666294 - L1ME4a LINE L1 -3394 2821 2589 499 298 40 46 chr12 124616206 124616552 -19665937 - L1ME4a LINE L1 -3688 2527 2184 447 306 96 28 chr12 124616904 124617537 -19664952 - L1ME4a LINE L1 -853 1723 1185 236 161 51 127 chr12 124617538 124617598 -19664891 + Charlie4a DNA MER1_type 252 300 -1661 1312 140 31 13 chr12 124617598 124617827 -19664662 + L1MA4 LINE L1 6063 6295 -5 236 161 51 127 chr12 124617827 124617884 -19664605 + Charlie4a DNA MER1_type 300 360 -148 740 167 8 0 chr12 124617887 124618007 -19664482 + FLAM_A SINE Alu 18 138 -4 498 211 53 0 chr12 124618031 124618145 -19664344 + Charlie4a DNA MER1_type 382 501 -7 236 298 21 0 chr12 124618149 124618243 -19664246 - L1ME4a LINE L1 -6013 192 97 229 330 18 28 chr12 124618518 124618627 -19663862 - L2 LINE L2 -24 3248 3141 196 224 20 61 chr12 124618756 124618805 -19663684 - MIR3 SINE MIR -52 156 110 * 659 216 0 0 chr12 124618802 124618927 -19663562 + MIR SINE MIR 93 217 -45 234 277 194 32 chr12 124619042 124619197 -19663292 + L2 LINE L2 3118 3297 -16 2161 130 8 90 chr12 124619501 124619650 -19662839 + MER47A DNA MER2_type 1 161 -2162 1799 159 14 0 chr12 124619650 124619933 -19662556 + AluJb SINE Alu 1 287 -25 2161 130 8 90 chr12 124619933 124620182 -19662307 + MER47A DNA MER2_type 161 366 0 198 0 0 0 chr12 124620230 124620252 -19662237 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 650 153 159 53 chr12 124620269 124620439 -19662050 - MER53 DNA DNA 0 189 2 387 41 0 0 chr12 124620810 124620859 -19661630 + (CA)n Simple_repeat Simple_repeat 1 49 0 2197 127 0 10 chr12 124621026 124621340 -19661149 - AluSx SINE Alu -1 311 1 329 260 92 23 chr12 124621551 124621732 -19660757 - MIR SINE MIR -46 216 21 252 252 57 73 chr12 124622180 124622303 -19660186 + MIR3 SINE MIR 42 162 -46 320 239 0 14 chr12 124622306 124622372 -19660117 - MER58A DNA MER1_type 0 224 160 838 144 0 0 chr12 124622372 124622497 -19659992 - MER58A DNA MER1_type 0 127 3 736 215 28 156 chr12 124622559 124622949 -19659540 - MER102b DNA MER1_type -1 340 1 2577 97 37 0 chr12 124623275 124623626 -19658863 + THE1B LTR MaLR 1 364 0 496 175 0 0 chr12 124624174 124624254 -19658235 + L1MB2 LINE L1 5555 5634 -549 2341 187 54 2 chr12 124624256 124624717 -19657772 + L1MB2 LINE L1 5683 6167 -4 339 254 140 0 chr12 124624726 124624840 -19657649 - L1ME2 LINE L1 -34 6130 6001 234 322 0 0 chr12 124625117 124625176 -19657313 + (CA)n Simple_repeat Simple_repeat 1 59 0 2042 224 19 70 chr12 124625478 124626137 -19656352 + L1MD3 LINE L1 7279 7994 -1 261 299 163 36 chr12 124626156 124626407 -19656082 - L2 LINE L2 -37 3276 2994 550 270 172 61 chr12 124626427 124627292 -19655197 - L2 LINE L2 0 3272 2293 204 255 198 19 chr12 124627436 124627542 -19654947 - MIR SINE MIR -120 142 18 2304 109 62 14 chr12 124628931 124629289 -19653200 - THE1C LTR MaLR 0 375 1 184 339 46 15 chr12 124629625 124629755 -19652734 + L2 LINE L2 1790 1923 -1391 180 333 94 17 chr12 124629924 124629965 -19652524 + L2 LINE L2 2643 2679 -635 2118 126 13 3 chr12 124629965 124630274 -19652215 - AluSx SINE Alu 0 312 1 180 333 94 17 chr12 124630274 124630349 -19652140 + L2 LINE L2 2679 2768 -546 251 302 210 20 chr12 124630381 124630629 -19651860 + L2 LINE L2 2924 3218 -54 263 240 91 65 chr12 124631012 124631166 -19651323 + MER5A DNA MER1_type 1 158 -31 746 194 51 31 chr12 124632488 124632684 -19649805 + Charlie5 DNA MER1_type 1 200 -2412 * 1324 167 19 7 chr12 124632682 124632952 -19649537 + Charlie5 DNA MER1_type 2352 2624 0 29 0 0 0 chr12 124637108 124637137 -19645352 + AT_rich Low_complexity Low_complexity 1 29 0 1309 194 54 3 chr12 124639674 124639800 -19642689 + MER33 DNA MER1_type 1 111 -2474 2206 94 23 10 chr12 124639800 124640108 -19642381 + AluSx SINE Alu 1 312 0 1309 194 54 3 chr12 124640108 124640296 -19642193 + MER33 DNA MER1_type 111 323 -1 1932 135 116 3 chr12 124640305 124640608 -19641881 - MER1B DNA MER1_type 0 337 1 2239 91 11 0 chr12 124640865 124641151 -19641338 + AluY SINE Alu 10 298 -13 1209 163 0 10 chr12 124642025 124642221 -19640268 + AluJb SINE Alu 110 303 -9 300 188 134 9 chr12 124642253 124642365 -19640124 - L1MC5 LINE L1 -201 7760 7635 779 242 99 103 chr12 124642565 124643169 -19639320 - L1MC4 LINE L1 -801 7022 6507 484 258 147 13 chr12 124643249 124643655 -19638834 - L1MC4a LINE L1 -373 5929 5429 2319 111 3 0 chr12 124645004 124645310 -19637179 + AluSx SINE Alu 2 308 -4 516 237 64 45 chr12 124645715 124645871 -19636618 - MIR SINE MIR -97 165 7 1581 103 198 8 chr12 124647684 124647937 -19634552 - AluSg1 SINE Alu -8 301 1 531 229 72 7 chr12 124649271 124649424 -19633065 - MIR SINE MIR -10 252 90 312 170 0 0 chr12 124649686 124649739 -19632750 - MIR SINE MIR -7 255 203 1164 214 52 0 chr12 124652182 124652392 -19630097 + MER58A DNA MER1_type 1 221 -3 1516 239 124 11 chr12 124654110 124654751 -19627738 + L1ME3A LINE L1 5393 6158 -12 1820 150 35 7 chr12 124654992 124655278 -19627211 + AluJb SINE Alu 1 294 -18 313 265 24 0 chr12 124655278 124655361 -19627128 - MER58 DNA MER1_type -2335 85 1 335 323 8 31 chr12 124655388 124655518 -19626971 - MIR3 SINE MIR -5 203 77 1721 135 28 7 chr12 124655540 124655828 -19626661 + L1MB7 LINE L1 5614 5907 -277 1699 150 17 13 chr12 124655828 124656128 -19626361 + AluJb SINE Alu 1 301 -11 414 193 23 11 chr12 124656130 124656205 -19626284 + FLAM_A SINE Alu 50 128 -183 1563 151 24 51 chr12 124656205 124656431 -19626058 + L1MB7 LINE L1 5894 6112 -72 2354 110 0 0 chr12 124656431 124656740 -19625749 - AluSx SINE Alu -3 309 1 1563 151 24 51 chr12 124656740 124656805 -19625684 + L1MB7 LINE L1 6112 6177 -7 414 193 23 11 chr12 124656805 124656817 -19625672 + FLAM_A SINE Alu 128 138 -173 473 264 55 0 chr12 124657057 124657167 -19625322 + L2 LINE L2 3193 3308 -5 1460 196 36 11 chr12 124658461 124658737 -19623752 - AluJo SINE Alu -29 283 1 23 33 0 0 chr12 124659371 124659401 -19623088 + AT_rich Low_complexity Low_complexity 1 30 0 237 269 64 13 chr12 124659638 124659716 -19622773 + L1ME4a LINE L1 5511 5592 -2216 464 248 206 0 chr12 124659826 124660044 -19622445 + L1ME4a LINE L1 5791 6053 -68 1852 169 34 3 chr12 124660049 124660399 -19622090 + MER46B DNA MER2_type 1 236 0 23 54 0 0 chr12 124661013 124661050 -19621439 + AT_rich Low_complexity Low_complexity 1 37 0 497 294 136 7 chr12 124666420 124666729 -19615760 + Charlie8 DNA MER1_type 101 449 -1968 210 264 0 19 chr12 124667034 124667087 -19615402 - L2 LINE L2 -4 3268 3217 699 319 140 53 chr12 124667328 124668535 -19613954 + L2 LINE L2 1836 3209 -63 1208 201 107 28 chr12 124671033 124671352 -19611137 - MER2 DNA MER2_type 0 344 1 29 47 0 0 chr12 124671419 124671462 -19611027 + AT_rich Low_complexity Low_complexity 1 43 0 543 164 110 27 chr12 124672116 124672262 -19610227 - MER3 DNA MER1_type -5 204 47 1920 146 0 34 chr12 124672278 124672600 -19609889 + AluJo SINE Alu 2 312 0 1339 181 4 30 chr12 124673525 124673546 -19608943 - MER47A DNA MER2_type -2059 264 244 1853 141 10 7 chr12 124673546 124673836 -19608653 - AluSx SINE Alu -21 291 1 1339 181 4 30 chr12 124673836 124674085 -19608404 - MER47A DNA MER2_type -2079 244 1 2465 72 0 3 chr12 124674197 124674503 -19607986 - AluSx SINE Alu -5 307 3 1861 169 0 0 chr12 124675537 124675833 -19606656 - AluSx SINE Alu -14 298 3 228 253 32 42 chr12 124676605 124676700 -19605789 + MIR3 SINE MIR 93 186 -22 204 286 99 4 chr12 124676810 124676900 -19605589 + MIR SINE MIR 79 148 -60 1620 158 88 7 chr12 124677244 124677517 -19604972 + AluSx SINE Alu 1 295 -17 271 333 98 11 chr12 124678028 124678202 -19604287 + MIR SINE MIR 65 253 -9 820 149 79 166 chr12 124678939 124679294 -19603195 + MER33 DNA MER1_type 1 324 0 2023 120 0 0 chr12 124679306 124679590 -19602899 - AluSx SINE Alu -8 304 21 24 0 0 0 chr12 124681815 124681839 -19600650 + AT_rich Low_complexity Low_complexity 1 24 0 223 269 149 0 chr12 124683357 124683424 -19599065 - MIR SINE MIR -107 101 25 366 273 102 23 chr12 124685858 124686074 -19596415 - L1MEd LINE L1 -3394 2735 2503 438 307 28 12 chr12 124686085 124686336 -19596153 - L1MEd LINE L1 -3688 2441 2187 389 303 79 31 chr12 124686788 124687424 -19595065 - L1MEd LINE L1 -853 1637 1003 1202 149 32 0 chr12 124687477 124687698 -19594791 + L1MA4 LINE L1 6063 6290 -10 657 165 8 8 chr12 124687770 124687891 -19594598 + FLAM_A SINE Alu 18 138 -4 445 211 53 0 chr12 124687915 124688029 -19594460 + Charlie4 DNA MER1_type 1835 1954 -7 226 330 18 28 chr12 124688402 124688511 -19593978 - L2 LINE L2 -24 3248 3141 196 224 20 61 chr12 124688638 124688687 -19593802 - MIR3 SINE MIR -52 156 110 * 632 232 0 0 chr12 124688684 124688809 -19593680 + MIR SINE MIR 93 217 -45 234 281 188 31 chr12 124688924 124689084 -19593405 + L2 LINE L2 3118 3302 -11 1973 130 8 90 chr12 124689383 124689532 -19592957 + MER47A DNA MER2_type 1 161 -2162 1808 159 14 0 chr12 124689532 124689815 -19592674 + AluJb SINE Alu 1 287 -25 1973 130 8 90 chr12 124689815 124690064 -19592425 + MER47A DNA MER2_type 161 366 0 198 0 0 0 chr12 124690112 124690134 -19592355 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 561 153 159 53 chr12 124690151 124690321 -19592168 - MER53 DNA DNA 0 189 2 387 41 0 0 chr12 124690692 124690741 -19591748 + (CA)n Simple_repeat Simple_repeat 1 49 0 1873 83 0 8 chr12 124690908 124691149 -19591340 - AluSg/x SINE Alu -1 309 71 26 50 0 0 chr12 124691650 124691690 -19590799 + AT_rich Low_complexity Low_complexity 1 40 0 2005 141 0 7 chr12 124692580 124692879 -19589610 + AluSg SINE Alu 1 297 -13 351 264 104 49 chr12 124693661 124693824 -19588665 + MIR SINE MIR 16 187 -75 180 0 0 0 chr12 124694444 124694464 -19588025 + (A)n Simple_repeat Simple_repeat 1 20 0 421 232 309 11 chr12 124694629 124694810 -19587679 + MIR SINE MIR 18 252 -10 2265 84 10 32 chr12 124697673 124697981 -19584508 - AluSg SINE Alu -9 301 1 1236 141 16 5 chr12 124699884 124700069 -19582420 + AluJo SINE Alu 1 187 -125 2125 95 39 9 chr12 124700069 124700405 -19582084 + Tigger4(Zombi) DNA MER2_type 2386 2731 0 1722 196 0 0 chr12 124704130 124704426 -19578063 - AluJb SINE Alu -16 296 1 246 370 109 16 chr12 124704615 124704807 -19577682 - MIR SINE MIR -42 220 11 211 300 0 0 chr12 124704818 124704868 -19577621 - L2 LINE L2 -13 3259 3210 24 0 0 0 chr12 124705212 124705236 -19577253 + AT_rich Low_complexity Low_complexity 1 24 0 183 42 0 0 chr12 124705408 124705432 -19577057 + (A)n Simple_repeat Simple_repeat 1 24 0 568 125 0 0 chr12 124706651 124706731 -19575758 - FLAM SINE Alu -19 124 45 192 283 0 19 chr12 124709434 124709487 -19573002 + L2 LINE L2 3221 3272 0 1586 163 14 18 chr12 124709538 124709814 -19572675 + AluJo SINE Alu 15 289 -23 195 292 104 21 chr12 124710719 124710815 -19571674 - L2 LINE L2 -42 3230 3127 2507 207 37 34 chr12 124710945 124711598 -19570891 - L1MA6 LINE L1 -792 5354 4700 * 5424 136 38 2 chr12 124711594 124712515 -19569974 + L1MA6 LINE L1 5347 6300 0 233 269 75 0 chr12 124712945 124713012 -19569477 + MIR SINE MIR 70 141 -67 * 668 173 53 60 chr12 124713011 124713161 -19569328 - MER5A DNA MER1_type -40 149 1 546 246 138 56 chr12 124713262 124713567 -19568922 + L1MC4a LINE L1 5611 5940 -1868 1650 157 14 4 chr12 124713649 124713955 -19568534 + AluJb SINE Alu 1 309 0 322 302 0 19 chr12 124714243 124714349 -19568140 - L3 LINE CR1 -884 693 590 249 289 13 13 chr12 124714398 124714474 -19568015 - L3 LINE CR1 -1102 475 400 249 319 168 0 chr12 124714978 124715091 -19567398 - MIR3 SINE MIR -35 173 42 215 227 113 52 chr12 124715724 124715821 -19566668 - L2 LINE L2 -178 3135 3033 443 259 142 71 chr12 124716008 124716375 -19566114 + L1M4 LINE L1 2160 2552 -3594 243 0 0 0 chr12 124716529 124716556 -19565933 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1681 135 8 0 chr12 124716559 124716803 -19565686 - AluSx SINE Alu -31 281 36 498 218 77 56 chr12 124716811 124717045 -19565444 + L1M4 LINE L1 2785 3023 -3123 356 241 81 46 chr12 124717052 124717226 -19565263 + L1M4 LINE L1 3080 3259 -2887 307 297 88 48 chr12 124717528 124717869 -19564620 + L1M4 LINE L1 3830 4156 -1990 2077 109 3 41 chr12 124717869 124718189 -19564300 + AluY SINE Alu 1 308 -3 243 0 0 0 chr12 124718189 124718216 -19564273 + (GGGGA)n Simple_repeat Simple_repeat 3 29 0 216 0 0 0 chr12 124718215 124718239 -19564250 + (CGGGA)n Simple_repeat Simple_repeat 2 25 0 307 297 88 48 chr12 124718216 124718250 -19564239 + L1M4 LINE L1 4155 4197 -1949 756 0 0 0 chr12 124718250 124718334 -19564155 + (GAAAA)n Simple_repeat Simple_repeat 5 88 0 423 56 0 0 chr12 124718324 124718378 -19564111 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 * 687 267 122 41 chr12 124718380 124719013 -19563476 + L1M4 LINE L1 4152 4835 -1311 447 272 199 28 chr12 124719015 124719333 -19563156 + L2 LINE L2 2788 3153 -160 358 262 12 42 chr12 124719419 124719587 -19562902 + GA-rich Low_complexity Low_complexity 1 163 0 22 70 0 0 chr12 124719929 124719972 -19562517 + AT_rich Low_complexity Low_complexity 1 43 0 195 42 0 0 chr12 124720319 124720343 -19562146 + (TG)n Simple_repeat Simple_repeat 2 25 0 211 375 52 10 chr12 124720777 124720873 -19561616 + L2 LINE L2 3158 3257 -15 2056 86 11 4 chr12 124721308 124721607 -19560882 + AluSx SINE Alu 13 313 0 346 254 82 36 chr12 124721616 124721726 -19560763 - L2 LINE L2 -4 3268 3154 1672 156 51 0 chr12 124722174 124722450 -19560039 - AluJb SINE Alu -22 290 1 518 279 84 0 chr12 124722547 124722737 -19559752 + L2 LINE L2 3108 3313 0 2167 118 32 6 chr12 124723769 124724117 -19558372 + MER46B DNA MER2_type 5 236 0 24 0 0 0 chr12 124724746 124724770 -19557719 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr12 124725318 124725345 -19557144 + (A)n Simple_repeat Simple_repeat 1 27 0 553 362 65 8 chr12 124726134 124726380 -19556109 - L2 LINE L2 -544 2770 2511 369 269 31 38 chr12 124726380 124726540 -19555949 - L2 LINE L2 -996 2318 2160 387 187 0 44 chr12 124727226 124727317 -19555172 + L1ME LINE L1 5725 5811 -359 1414 181 99 42 chr12 124727664 124728018 -19554471 + THE1C LTR MaLR 2 375 0 441 320 68 59 chr12 124728033 124728136 -19554353 + L3 LINE CR1 1032 1133 -444 2025 99 33 0 chr12 124728136 124728441 -19554048 + AluY SINE Alu 1 314 0 441 320 68 59 chr12 124728441 124728555 -19553934 + L3 LINE CR1 1133 1252 -325 21 0 0 0 chr12 124728662 124728683 -19553806 + AT_rich Low_complexity Low_complexity 1 21 0 266 305 216 5 chr12 124728774 124728964 -19553525 + L3 LINE CR1 1347 1576 -1 22 70 0 0 chr12 124732451 124732494 -19549995 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr12 124733113 124733134 -19549355 + AT_rich Low_complexity Low_complexity 1 21 0 2420 88 0 0 chr12 124733265 124733571 -19548918 + AluY SINE Alu 1 306 -5 1457 199 10 19 chr12 124733641 124733952 -19548537 + AluJo SINE Alu 1 308 -4 2059 122 20 7 chr12 124737233 124737537 -19544952 + AluSx SINE Alu 1 308 -4 460 69 0 0 chr12 124737828 124737886 -19544603 + Alu SINE Alu 228 285 -25 1775 155 36 39 chr12 124738099 124738435 -19544054 - MER46B DNA MER2_type 0 236 27 276 30 0 0 chr12 124738649 124738682 -19543807 + (CA)n Simple_repeat Simple_repeat 2 34 0 220 330 36 127 chr12 124739809 124740085 -19542404 - L2 LINE L2 -76 3196 2946 651 237 69 17 chr12 124740102 124740275 -19542214 - MIR SINE MIR -18 244 63 339 292 96 11 chr12 124740413 124740591 -19541898 - MIR SINE MIR -66 196 4 327 25 0 0 chr12 124740772 124740812 -19541677 + (CA)n Simple_repeat Simple_repeat 2 41 0 1706 250 119 17 chr12 124741258 124741906 -19540583 + L1ME3A LINE L1 5457 6170 0 2115 105 13 10 chr12 124742192 124742497 -19539992 + AluSx SINE Alu 1 306 -6 1142 178 208 8 chr12 124742890 124743126 -19539363 - AluJb SINE Alu -19 283 1 1851 158 28 0 chr12 124745663 124745954 -19536535 - AluJb SINE Alu -13 299 1 2120 118 0 3 chr12 124746012 124746308 -19536181 - AluSq SINE Alu -14 299 5 33 66 0 0 chr12 124746348 124746409 -19536080 + AT_rich Low_complexity Low_complexity 1 61 0 1980 124 19 10 chr12 124746890 124747197 -19535292 + AluSx SINE Alu 1 310 -2 211 289 161 13 chr12 124748008 124748157 -19534332 + MIR SINE MIR 48 218 -44 1903 96 0 4 chr12 124748463 124748723 -19533766 + AluY SINE Alu 51 309 -2 1557 179 0 4 chr12 124748843 124749100 -19533389 - AluSx SINE Alu -16 296 41 1877 101 0 16 chr12 124749175 124749433 -19533056 - AluSc SINE Alu -13 296 43 1391 169 0 28 chr12 124749969 124750218 -19532271 + AluJo SINE Alu 56 297 -15 1704 158 17 48 chr12 124750492 124750587 -19531902 + MER2 DNA MER2_type 2 98 -246 1596 177 27 24 chr12 124750587 124750881 -19531608 + AluJb SINE Alu 1 295 -17 1704 158 17 48 chr12 124750881 124751139 -19531350 + MER2 DNA MER2_type 98 344 0 432 286 18 27 chr12 124751515 124751627 -19530862 + L2 LINE L2 3190 3300 -13 424 252 68 0 chr12 124751642 124751745 -19530744 - Tigger3(Golem) DNA MER2_type -1 3028 2919 27 0 0 0 chr12 124751745 124751772 -19530717 + AT_rich Low_complexity Low_complexity 1 27 0 345 239 14 0 chr12 124751873 124751944 -19530545 - Tigger3(Golem) DNA MER2_type -2949 80 9 195 184 0 0 chr12 124752789 124752827 -19529662 + (CA)n Simple_repeat Simple_repeat 1 38 0 328 45 0 0 chr12 124753231 124753275 -19529214 + MADE1 DNA Mariner 37 80 0 313 315 123 41 chr12 124754350 124754569 -19527920 + MIR SINE MIR 12 248 -14 1888 158 28 3 chr12 124756359 124756682 -19525807 + MER46B DNA MER2_type 31 236 0 21 0 0 0 chr12 124756699 124756720 -19525769 + AT_rich Low_complexity Low_complexity 1 21 0 589 265 35 18 chr12 124756882 124757052 -19525437 + MIR SINE MIR 23 195 -67 605 203 188 30 chr12 124757074 124757271 -19525218 - MIR SINE MIR -28 234 7 24 32 0 0 chr12 124758053 124758084 -19524405 + AT_rich Low_complexity Low_complexity 1 31 0 1085 115 0 0 chr12 124758106 124758268 -19524221 - AluSp SINE Alu 0 306 145 215 278 0 0 chr12 124758951 124759005 -19523484 - MIR3 SINE MIR -29 179 126 1758 87 0 9 chr12 124759136 124759367 -19523122 - AluSg/x SINE Alu -11 299 71 26 50 0 0 chr12 124759868 124759908 -19522581 + AT_rich Low_complexity Low_complexity 1 40 0 2005 137 0 7 chr12 124760798 124761097 -19521392 + AluSg SINE Alu 1 297 -13 347 264 104 49 chr12 124761879 124762042 -19520447 + MIR SINE MIR 16 187 -75 1232 209 0 4 chr12 124762488 124762722 -19519767 + AluJo SINE Alu 78 310 -2 2045 103 41 3 chr12 124764028 124764318 -19518171 + AluSx SINE Alu 1 301 -11 223 312 129 0 chr12 124764584 124764677 -19517812 + MIR SINE MIR 11 115 -147 830 242 18 18 chr12 124764700 124764923 -19517566 + MER58A DNA MER1_type 1 223 -1 1063 144 132 116 chr12 124765074 124765371 -19517118 + Charlie1b DNA MER1_type 67 358 -2403 189 0 0 0 chr12 124765371 124765392 -19517097 + (TGG)n Simple_repeat Simple_repeat 1 21 0 1586 172 28 31 chr12 124765393 124765683 -19516806 - AluJo SINE Alu -23 289 1 1063 144 132 116 chr12 124765683 124765713 -19516776 + Charlie1b DNA MER1_type 358 386 -2375 1639 123 33 8 chr12 124765713 124765957 -19516532 - AluJb SINE Alu -25 287 38 1063 144 132 116 chr12 124765957 124766064 -19516425 + Charlie1b DNA MER1_type 386 511 -12 1493 115 60 0 chr12 124766080 124766297 -19516192 - MER30B DNA MER1_type 0 230 1 865 273 34 61 chr12 124766519 124766622 -19515867 + LTR37B LTR ERV1 6 110 -358 1792 241 117 8 chr12 124766622 124767144 -19515345 + MER119 DNA MER1_type 5 583 0 865 273 34 61 chr12 124767144 124767512 -19514977 + LTR37B LTR ERV1 110 464 -4 1647 169 62 0 chr12 124767759 124768031 -19514458 + AluJb SINE Alu 1 289 -23 643 160 0 0 chr12 124768728 124768834 -19513655 + U6 snRNA snRNA 2 107 0 2027 132 23 0 chr12 124769282 124769585 -19512904 + AluSx SINE Alu 1 310 -2 1113 112 65 0 chr12 124770781 124770950 -19511539 + AluSg/x SINE Alu 120 299 -11 333 180 139 8 chr12 124771853 124771908 -19510581 + HAL1 LINE L1 2228 2274 -233 282 29 0 0 chr12 124771908 124771943 -19510546 + (CA)n Simple_repeat Simple_repeat 1 35 0 333 180 139 8 chr12 124771943 124772009 -19510480 + HAL1 LINE L1 2274 2365 -142 2261 101 7 0 chr12 124772434 124772731 -19509758 - AluSp SINE Alu -11 302 4 1149 219 68 149 chr12 124774094 124774562 -19507927 + L1ME LINE L1 6 510 -5560 1141 177 43 0 chr12 124774562 124774771 -19507718 + MER20 DNA MER1_type 1 218 -1 1149 219 68 149 chr12 124774771 124774884 -19507605 + L1ME LINE L1 510 631 -5439 231 36 0 0 chr12 124774884 124774912 -19507577 + (GGGGA)n Simple_repeat Simple_repeat 4 31 0 1149 219 68 149 chr12 124774912 124775304 -19507185 + L1ME LINE L1 631 901 -5169 690 185 0 59 chr12 124775374 124775509 -19506980 - FLAM_A SINE Alu -6 127 1 2147 113 16 10 chr12 124776995 124777305 -19505184 + AluSx SINE Alu 1 312 0 518 272 154 25 chr12 124777777 124778101 -19504388 + L2 LINE L2 1772 2137 -1177 233 299 139 7 chr12 124780074 124780211 -19502278 - MIR SINE MIR -59 203 49 1715 160 29 7 chr12 124781039 124781320 -19501169 + AluJb SINE Alu 1 287 -25 1967 158 0 3 chr12 124782224 124782534 -19499955 + AluJb SINE Alu 1 309 -3 24 53 0 0 chr12 124782649 124782687 -19499802 + AT_rich Low_complexity Low_complexity 1 38 0 711 198 198 71 chr12 124782984 124783308 -19499181 - HsTC2 DNA Tc2 -51 1847 1566 2053 138 14 0 chr12 124783308 124783598 -19498891 - AluSx SINE Alu -18 294 1 711 198 198 71 chr12 124783598 124783627 -19498862 - HsTC2 DNA Tc2 -332 1566 1273 22 0 0 0 chr12 124783627 124783649 -19498840 + AT_rich Low_complexity Low_complexity 1 22 0 1600 232 62 41 chr12 124783650 124784115 -19498374 - HsTC2 DNA Tc2 -1387 511 37 2378 86 3 3 chr12 124784116 124784429 -19498060 + AluSq SINE Alu 1 313 0 333 328 121 17 chr12 124785211 124785385 -19497104 - MIR SINE MIR -67 195 4 2183 118 3 3 chr12 124786469 124786775 -19495714 + AluSx SINE Alu 1 306 -6 1620 181 16 26 chr12 124786781 124787091 -19495398 + AluJb SINE Alu 1 307 -5 207 389 47 40 chr12 124787358 124787507 -19494982 + L2 LINE L2 3111 3260 -12 2375 86 13 0 chr12 124788863 124789167 -19493322 - AluSg SINE Alu -1 309 2 1375 153 6 107 chr12 124789410 124789737 -19492752 - AluJo SINE Alu -6 296 3 2254 113 7 0 chr12 124790152 124790461 -19492028 - AluSq SINE Alu -2 311 1 877 273 34 27 chr12 124792050 124792343 -19490146 + MLT1I LTR MaLR 111 405 -4 560 339 71 24 chr12 124792499 124792715 -19489774 + L3 LINE CR1 1254 1489 -88 2213 117 0 3 chr12 124792715 124793024 -19489465 + AluSx SINE Alu 1 308 -4 560 339 71 24 chr12 124793024 124793102 -19489387 + L3 LINE CR1 1489 1562 -15 226 279 39 19 chr12 124793134 124793304 -19489185 - MIR SINE MIR 0 262 37 2292 82 0 0 chr12 124793962 124794274 -19488215 + AluSg SINE Alu 1 312 0 265 182 0 0 chr12 124794438 124794482 -19488007 + MER30B DNA MER1_type 2 45 -145 192 77 0 0 chr12 124795182 124795208 -19487281 + (TC)n Simple_repeat Simple_repeat 1 26 0 2414 74 0 7 chr12 124795463 124795760 -19486729 + AluSg1 SINE Alu 1 295 -14 297 319 53 9 chr12 124795902 124796015 -19486474 + L2 LINE L2 2921 3038 -275 2038 261 66 27 chr12 124796038 124796469 -19486020 - MLT1G LTR MaLR 0 590 129 2026 121 0 0 chr12 124796469 124796776 -19485713 - AluY SINE Alu 0 307 1 2038 261 66 27 chr12 124796776 124796907 -19485582 - MLT1G LTR MaLR -461 129 5 302 292 195 9 chr12 124797051 124797164 -19485325 + L2 LINE L2 3180 3313 0 358 336 29 2 chr12 124797636 124797789 -19484700 - MIR SINE MIR -62 146 42 198 227 0 0 chr12 124798104 124798148 -19484341 + MIR SINE MIR 219 262 0 2568 59 3 0 chr12 124798168 124798471 -19484018 - AluSq SINE Alu -9 304 1 27 0 0 0 chr12 124799879 124799906 -19482583 + AT_rich Low_complexity Low_complexity 1 27 0 1911 114 89 0 chr12 124800028 124800308 -19482181 + AluSq SINE Alu 1 305 -8 631 286 13 56 chr12 124800463 124800694 -19481795 + L2 LINE L2 3077 3297 -16 29 28 0 0 chr12 124801788 124801824 -19480665 + AT_rich Low_complexity Low_complexity 1 36 0 1219 279 108 18 chr12 124801915 124802641 -19479848 + L2 LINE L2 2519 3300 -13 2090 130 0 3 chr12 124802721 124803028 -19479461 + AluSx SINE Alu 1 306 -6 495 134 160 59 chr12 124803543 124803662 -19478827 + FLAM_C SINE Alu 2 132 -1 225 238 50 38 chr12 124804964 124805044 -19477445 + MIR SINE MIR 175 255 -7 187 257 0 57 chr12 124805686 124805756 -19476733 + MIR3 SINE MIR 143 208 0 1529 171 58 27 chr12 124805810 124805975 -19476514 - AluJo SINE Alu -11 301 122 405 0 0 0 chr12 124805975 124806020 -19476469 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1529 171 58 27 chr12 124806020 124806146 -19476343 - AluJo SINE Alu -190 122 1 1355 98 12 82 chr12 124806322 124806432 -19476057 - MER30 DNA MER1_type 0 230 145 2333 96 3 0 chr12 124806432 124806735 -19475754 - AluSc SINE Alu -5 304 1 1355 98 12 82 chr12 124806735 124806868 -19475621 - MER30 DNA MER1_type -85 145 4 569 176 0 10 chr12 124806898 124807000 -19475489 + AluS SINE Alu 1 101 -212 1382 178 0 0 chr12 124807541 124807766 -19474723 - AluJb SINE Alu -2 310 86 3120 216 112 46 chr12 124808630 124808838 -19473651 + L1MC4 LINE L1 6871 7064 -978 306 50 0 0 chr12 124808838 124808878 -19473611 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 3120 216 112 46 chr12 124808878 124809761 -19472728 + L1MC4 LINE L1 7064 8034 -8 207 100 0 0 chr12 124809996 124810026 -19472463 + (A)n Simple_repeat Simple_repeat 1 30 0 1367 232 60 17 chr12 124811369 124811783 -19470706 - HsTC2b DNA Tc2 0 920 313 1566 168 0 68 chr12 124811835 124812157 -19470332 + AluJo SINE Alu 1 300 -12 649 102 21 59 chr12 124812164 124812351 -19470138 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 651 270 93 35 chr12 124812660 124812949 -19469540 - HsTC2b DNA Tc2 -572 343 38 1158 207 190 5 chr12 124813015 124813431 -19469058 + L1ME1 LINE L1 4015 4507 -1639 1859 224 81 40 chr12 124813452 124814478 -19468011 + L1ME1 LINE L1 4551 5622 -544 3789 175 54 62 chr12 124814509 124815367 -19467122 + MER21B LTR ERV1 2 852 -11 1393 217 69 12 chr12 124815466 124815872 -19466617 + L1ME1 LINE L1 5672 6100 -66 1805 162 0 10 chr12 124816291 124816587 -19465902 - AluJb SINE Alu -17 295 3 29 60 0 0 chr12 124816589 124816639 -19465850 + AT_rich Low_complexity Low_complexity 1 50 0 23 68 0 0 chr12 124816808 124816852 -19465637 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr12 124817385 124817420 -19465069 + AT_rich Low_complexity Low_complexity 1 35 0 256 297 201 44 chr12 124817652 124817901 -19464588 + LTR67 LTR ERVL 109 396 -161 1036 194 4 23 chr12 124818046 124818319 -19464170 + AluJo SINE Alu 6 312 0 216 0 0 0 chr12 124818319 124818343 -19464146 + (TA)n Simple_repeat Simple_repeat 2 25 0 190 267 0 99 chr12 124818345 124818446 -19464043 - MIR SINE MIR -161 101 11 220 317 3 14 chr12 124818639 124818712 -19463777 - MIR SINE MIR -131 77 3 393 22 0 0 chr12 124818913 124818959 -19463530 + (TC)n Simple_repeat Simple_repeat 1 46 0 * 396 0 0 0 chr12 124818958 124819002 -19463487 + (CA)n Simple_repeat Simple_repeat 1 44 0 557 68 0 11 chr12 124822586 124822674 -19459815 + (GA)n Simple_repeat Simple_repeat 2 88 0 468 259 9 0 chr12 124823670 124823782 -19458707 + FLAM_A SINE Alu 1 113 -29 189 0 0 0 chr12 124823782 124823803 -19458686 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 23 0 0 0 chr12 124824277 124824300 -19458189 + AT_rich Low_complexity Low_complexity 1 23 0 531 277 148 40 chr12 124826186 124826511 -19455978 + L2 LINE L2 2617 2976 -338 453 82 0 0 chr12 124827631 124827692 -19454797 + Alu SINE Alu 1 61 -257 2394 96 0 0 chr12 124828106 124828418 -19454071 + AluSx SINE Alu 1 312 0 475 122 12 37 chr12 124829560 124829642 -19452847 - MER20 DNA MER1_type -139 80 1 1740 156 0 14 chr12 124830193 124830476 -19452013 + AluSx SINE Alu 18 296 -16 2090 112 10 10 chr12 124830477 124830781 -19451708 + AluSq SINE Alu 2 305 -8 223 214 0 36 chr12 124831098 124831118 -19451371 + GA-rich Low_complexity Low_complexity 2 21 -34 2090 111 31 0 chr12 124831118 124831406 -19451083 + AluSx SINE Alu 1 297 -15 223 214 0 36 chr12 124831406 124831441 -19451048 + GA-rich Low_complexity Low_complexity 21 55 0 1455 267 79 24 chr12 124832048 124832603 -19449886 + MLT1G3 LTR MaLR 3 513 -17 1257 99 0 28 chr12 124833636 124833818 -19448671 + AluSg/x SINE Alu 129 305 -7 23 0 0 0 chr12 124834079 124834102 -19448387 + AT_rich Low_complexity Low_complexity 1 23 0 261 174 0 0 chr12 124834336 124834405 -19448084 + (TA)n Simple_repeat Simple_repeat 1 69 0 406 352 61 14 chr12 124836512 124836725 -19445764 + MIR SINE MIR 20 242 -20 182 344 16 16 chr12 124837839 124837903 -19444586 + L2 LINE L2 3117 3180 -92 256 315 158 0 chr12 124838773 124838919 -19443570 + MIR SINE MIR 94 262 0 588 272 84 40 chr12 124839798 124840048 -19442441 - MIR SINE MIR 0 262 2 2051 139 0 3 chr12 124840576 124840870 -19441619 - AluSx SINE Alu -19 293 1 1868 160 7 3 chr12 124840885 124841172 -19441317 + AluJo SINE Alu 1 288 -24 189 0 0 0 chr12 124842146 124842167 -19440322 + (A)n Simple_repeat Simple_repeat 1 21 0 383 330 38 53 chr12 124842620 124842829 -19439660 + MLT1J LTR MaLR 298 503 -8 334 194 60 0 chr12 124843072 124843139 -19439350 + L2 LINE L2 3158 3228 -44 391 248 128 8 chr12 124844526 124844643 -19437846 - MIR SINE MIR -62 200 70 24 32 0 0 chr12 124845811 124845842 -19436647 + AT_rich Low_complexity Low_complexity 1 31 0 236 330 61 17 chr12 124846200 124846315 -19436174 + MIR3 SINE MIR 41 160 -48 22 0 0 0 chr12 124846321 124846343 -19436146 + AT_rich Low_complexity Low_complexity 1 22 0 1229 146 104 71 chr12 124846343 124846611 -19435878 - AluJo SINE Alu -35 277 1 1531 195 151 0 chr12 124846669 124847013 -19435476 - MSTD LTR MaLR 0 396 1 340 310 82 73 chr12 124847251 124847483 -19435006 - L2 LINE L2 -7 3265 3032 1047 187 173 27 chr12 124847794 124848163 -19434326 + LTR54B LTR ERV1 76 498 0 22 35 0 0 chr12 124848632 124848661 -19433828 + AT_rich Low_complexity Low_complexity 1 29 0 570 207 9 43 chr12 124848661 124848777 -19433712 - FLAM_A SINE Alu -17 116 5 24 32 0 0 chr12 124849043 124849074 -19433415 + AT_rich Low_complexity Low_complexity 1 31 0 2244 90 0 0 chr12 124849106 124849383 -19433106 - AluSg SINE Alu -10 300 24 243 0 0 0 chr12 124851003 124851030 -19431459 + (T)n Simple_repeat Simple_repeat 1 27 0 2185 103 3 3 chr12 124851072 124851373 -19431116 - AluY SINE Alu -10 301 1 308 294 87 81 chr12 124851486 124851815 -19430674 + L2 LINE L2 2722 3046 -267 710 153 0 0 chr12 124851823 124851934 -19430555 + AluJb SINE Alu 1 111 -201 1325 96 43 0 chr12 124851936 124852124 -19430365 + MLT2A2 LTR ERVL 1 196 -257 240 57 0 29 chr12 124852122 124852157 -19430332 + MLT2A2 LTR ERVL 420 453 0 * 1064 139 36 0 chr12 124852158 124852323 -19430166 + AluSg/x SINE Alu 110 280 -32 21 0 0 0 chr12 124852323 124852344 -19430145 + AT_rich Low_complexity Low_complexity 1 21 0 367 267 68 48 chr12 124852440 124852586 -19429903 + L2 LINE L2 3165 3313 0 831 197 10 21 chr12 124854496 124854689 -19427800 - Charlie1a DNA MER1_type -1 1454 1264 4571 199 87 40 chr12 124855146 124855468 -19427021 - Charlie1a DNA MER1_type -1513 1248 943 1502 200 3 29 chr12 124855468 124855778 -19426711 + AluJo SINE Alu 1 302 -10 4571 199 87 40 chr12 124855778 124856339 -19426150 - Charlie1a DNA MER1_type -1818 943 292 1950 139 23 3 chr12 124856339 124856642 -19425847 - AluSq SINE Alu -3 310 2 4571 199 87 40 chr12 124856642 124856949 -19425540 - Charlie1a DNA MER1_type -2469 292 1 1064 299 145 52 chr12 124857053 124857882 -19424607 - L3 LINE CR1 -126 1451 546 243 336 68 48 chr12 124858336 124858586 -19423903 + MIR SINE MIR 2 256 -6 1499 162 25 4 chr12 124859594 124859835 -19422654 + AluJo SINE Alu 37 282 -30 1602 164 33 30 chr12 124860522 124860821 -19421668 + AluJo SINE Alu 1 300 -12 209 380 41 20 chr12 124861633 124861828 -19420661 - L2 LINE L2 -969 2345 2147 604 195 20 163 chr12 124861879 124862130 -19420359 + MIR SINE MIR 37 251 -11 234 0 0 0 chr12 124862137 124862163 -19420326 + (CAT)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr12 124862618 124862639 -19419850 + (A)n Simple_repeat Simple_repeat 1 21 0 745 209 21 132 chr12 124862772 124863059 -19419430 - L1ME3A LINE L1 -4 6166 5912 1303 159 100 26 chr12 124863602 124863764 -19418725 - AluJb SINE Alu -11 291 100 294 29 0 0 chr12 124863764 124863799 -19418690 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1303 159 100 26 chr12 124863799 124863907 -19418582 - AluJb SINE Alu -202 100 1 288 0 0 0 chr12 124864946 124864978 -19417511 + (TG)n Simple_repeat Simple_repeat 2 33 0 1522 167 24 27 chr12 124865069 124865362 -19417127 + AluJo SINE Alu 1 292 -20 185 136 0 45 chr12 124865452 124865496 -19416993 + (GAGAA)n Simple_repeat Simple_repeat 4 45 0 496 180 55 47 chr12 124865878 124865981 -19416508 + MER20 DNA MER1_type 91 197 -22 2178 148 29 0 chr12 124865981 124866332 -19416157 + MER46B DNA MER2_type 1 236 0 496 180 55 47 chr12 124866332 124866356 -19416133 + MER20 DNA MER1_type 197 219 0 318 271 93 0 chr12 124866361 124866468 -19416021 + L2 LINE L2 1512 1628 -1686 2176 117 30 0 chr12 124866661 124866960 -19415529 - AluSg SINE Alu -1 309 2 2112 101 20 10 chr12 124867245 124867542 -19414947 - AluSp SINE Alu -9 304 5 1607 260 123 24 chr12 124867774 124868431 -19414058 + L2 LINE L2 951 1672 -1642 339 25 0 0 chr12 124869545 124869585 -19412904 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr12 124870435 124870463 -19412026 + AT_rich Low_complexity Low_complexity 1 28 0 182 329 25 25 chr12 124871264 124871343 -19411146 + L2 LINE L2 2769 2847 -467 528 16 0 0 chr12 124871394 124871455 -19411034 + (TTTTC)n Simple_repeat Simple_repeat 1 61 0 2002 92 15 7 chr12 124871462 124871734 -19410755 - AluSg SINE Alu -36 274 1 279 350 17 24 chr12 124872270 124872461 -19410028 - MIR SINE MIR -65 143 3 666 257 115 9 chr12 124872940 124873158 -19409331 + MIR SINE MIR 2 242 -20 22 35 0 0 chr12 124873855 124873884 -19408605 + AT_rich Low_complexity Low_complexity 1 29 0 2994 162 63 11 chr12 124874244 124874881 -19407608 - L1MD1 LINE L1 -1 6241 5572 1259 218 83 18 chr12 124874897 124875472 -19407017 - L1MD1 LINE L1 -731 5511 4900 1701 196 40 78 chr12 124875477 124876027 -19406462 - L1MD1 LINE L1 -1681 4465 3937 2261 119 0 0 chr12 124876552 124876864 -19405625 + AluSx SINE Alu 1 312 0 27 0 0 0 chr12 124877445 124877472 -19405017 + AT_rich Low_complexity Low_complexity 1 27 0 2216 81 3 17 chr12 124878217 124878514 -19403975 + AluY SINE Alu 1 293 -18 1510 222 66 21 chr12 124878516 124879029 -19403460 + L1M4 LINE L1 2210 2745 -3401 1141 194 14 5 chr12 124879083 124879294 -19403195 + AluJb SINE Alu 85 297 -15 545 250 43 23 chr12 124879299 124879555 -19402934 + L1M4 LINE L1 3045 3305 -2841 289 240 0 13 chr12 124880553 124880628 -19401861 + CT-rich Low_complexity Low_complexity 3 76 0 290 127 127 48 chr12 124881946 124882009 -19400480 + MER110A LTR ERV1 69 136 -332 538 256 141 5 chr12 124882157 124882356 -19400133 + MER110A LTR ERV1 243 468 0 241 170 7 69 chr12 124882399 124882457 -19400032 + MIR SINE MIR 46 107 -101 1510 121 72 24 chr12 124882457 124882747 -19399742 + MLT2A2 LTR ERVL 1 304 -149 669 210 66 6 chr12 124883088 124883255 -19399234 - MER104 DNA MER2_type 0 180 4 243 364 100 0 chr12 124883336 124883476 -19399013 - L2 LINE L2 -9 3263 3110 379 302 60 0 chr12 124883497 124883613 -19398876 + L2 LINE L2 2888 3010 -262 4274 249 70 17 chr12 124884210 124885450 -19397039 - L1MDa LINE L1 -4984 1556 251 311 329 37 31 chr12 124885595 124885756 -19396733 - MIR SINE MIR -81 181 20 229 250 15 15 chr12 124885815 124885883 -19396606 + CT-rich Low_complexity Low_complexity 3 70 0 721 168 0 30 chr12 124887038 124887169 -19395320 - FLAM_A SINE Alu -3 130 4 278 193 0 18 chr12 124887660 124887717 -19394772 - LTR33A LTR ERVL -9 514 459 283 174 0 133 chr12 124889461 124889559 -19392930 + LTR9 LTR ERV1 47 131 -481 213 370 10 0 chr12 124891199 124891299 -19391190 + MIR SINE MIR 40 140 -68 3563 233 71 13 chr12 124892052 124893049 -19389440 + L1MC4a LINE L1 6753 7807 -1 206 296 38 68 chr12 124893386 124893518 -19388971 + MIR SINE MIR 24 151 -111 311 259 44 13 chr12 124893918 124894021 -19388468 + MER91 DNA MER1_type 86 189 -1 224 287 11 11 chr12 124894098 124894185 -19388304 + CT-rich Low_complexity Low_complexity 5 91 0 27 29 0 0 chr12 124894854 124894888 -19387601 + AT_rich Low_complexity Low_complexity 1 34 0 193 276 35 35 chr12 124895121 124895179 -19387310 + L2 LINE L2 3244 3301 -12 608 122 0 0 chr12 124896268 124896358 -19386131 + FLAM_C SINE Alu 30 119 -24 25 51 0 0 chr12 124896361 124896400 -19386089 + AT_rich Low_complexity Low_complexity 1 39 0 1442 163 0 72 chr12 124897270 124897391 -19385098 + AluJo SINE Alu 26 117 -195 1924 134 13 3 chr12 124897391 124897697 -19384792 + AluY SINE Alu 1 309 -2 1442 163 0 72 chr12 124897697 124897851 -19384638 + AluJo SINE Alu 117 281 -31 2237 104 3 0 chr12 124898710 124899007 -19383482 - AluSp SINE Alu -15 298 1 2077 107 21 4 chr12 124900001 124900282 -19382207 - AluSx SINE Alu -15 297 12 417 290 116 52 chr12 124900347 124900657 -19381832 + L1MEd LINE L1 841 1170 -4949 24 0 0 0 chr12 124900770 124900794 -19381695 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 124901260 124901281 -19381208 + AT_rich Low_complexity Low_complexity 1 21 0 2394 91 7 0 chr12 124902027 124902336 -19380153 + AluSp SINE Alu 1 311 -2 392 143 16 0 chr12 124904556 124904619 -19377870 + AluJ/FLAM SINE Alu 3 66 -236 207 225 0 0 chr12 124904622 124904662 -19377827 + A-rich Low_complexity Low_complexity 1 40 0 35 63 0 0 chr12 124905270 124905333 -19377156 + AT_rich Low_complexity Low_complexity 1 63 0 303 320 39 47 chr12 124907086 124907214 -19375275 + MIR SINE MIR 13 139 -123 210 37 0 0 chr12 124907970 124907997 -19374492 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 2246 109 0 3 chr12 124908080 124908384 -19374105 + AluSx SINE Alu 1 303 -9 246 156 0 0 chr12 124910052 124910097 -19372392 + A-rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr12 124910409 124910433 -19372056 + AT_rich Low_complexity Low_complexity 1 24 0 1906 108 0 0 chr12 124910617 124910868 -19371621 - AluSx SINE Alu -6 306 56 499 188 0 21 chr12 124911603 124911699 -19370790 + MER7A DNA MER2_type 1 92 -254 745 167 0 49 chr12 124911699 124911843 -19370646 - FLAM_C SINE Alu -6 137 1 1070 152 143 9 chr12 124911843 124912067 -19370422 + MER7A DNA MER2_type 83 336 0 1070 241 10 88 chr12 124912134 124912655 -19369834 + L1MC5 LINE L1 6414 6825 -983 2217 99 3 7 chr12 124912655 124912948 -19369541 + AluSq SINE Alu 1 292 -21 1070 241 10 88 chr12 124912948 124913042 -19369447 + L1MC5 LINE L1 6825 6925 -883 1571 197 10 26 chr12 124913226 124913531 -19368958 + AluJo SINE Alu 1 300 -12 21 36 0 0 chr12 124913638 124913666 -19368823 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr12 124915094 124915127 -19367362 + (TA)n Simple_repeat Simple_repeat 1 33 0 700 208 50 0 chr12 124915753 124915912 -19366577 + MER3 DNA MER1_type 42 208 -1 837 191 42 12 chr12 124916605 124916773 -19365716 - MER6B DNA MER2_type 0 210 38 290 241 11 35 chr12 124917734 124917821 -19364668 + GA-rich Low_complexity Low_complexity 4 88 0 2350 87 6 10 chr12 124917943 124918254 -19364235 - AluSq SINE Alu -2 311 2 245 370 40 10 chr12 124920088 124920188 -19362301 + L2 LINE L2 3169 3271 -1 614 208 15 0 chr12 124920729 124920859 -19361630 - FLAM_C SINE Alu -1 132 1 302 411 16 16 chr12 124922177 124922362 -19360127 + L2 LINE L2 3087 3271 -1 2053 134 3 10 chr12 124923285 124923584 -19358905 - AluSx SINE Alu -15 297 1 24 32 0 0 chr12 124923957 124923988 -19358501 + AT_rich Low_complexity Low_complexity 1 31 0 2289 75 0 3 chr12 124924338 124924644 -19357845 - AluSg1 SINE Alu 0 305 1 2234 114 0 0 chr12 124924965 124925255 -19357234 + AluSx SINE Alu 1 290 -22 1814 197 3 0 chr12 124925641 124925940 -19356549 + AluJb SINE Alu 1 300 -12 26 30 0 0 chr12 124926391 124926424 -19356065 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr12 124927880 124927930 -19354559 + AT_rich Low_complexity Low_complexity 1 50 0 1952 138 17 3 chr12 124927974 124928270 -19354219 + AluSp SINE Alu 1 300 -13 306 53 0 0 chr12 124928551 124928589 -19353900 - U6 snRNA snRNA -69 38 1 295 366 11 21 chr12 124928589 124928682 -19353807 - L2 LINE L2 -37 3235 3144 227 338 125 50 chr12 124928989 124929149 -19353340 + L2 LINE L2 3083 3254 -18 1776 138 3 64 chr12 124929229 124929541 -19352948 - AluJb SINE Alu -15 297 5 22 56 0 0 chr12 124930441 124930477 -19352012 + AT_rich Low_complexity Low_complexity 1 36 0 180 77 0 0 chr12 124930600 124930626 -19351863 + (T)n Simple_repeat Simple_repeat 1 26 0 2147 130 0 0 chr12 124931135 124931434 -19351055 + AluSx SINE Alu 1 299 -13 5113 140 30 30 chr12 124931893 124932867 -19349622 + Tigger1 DNA MER2_type 2 975 -1443 807 196 68 12 chr12 124932868 124933031 -19349458 - FAM SINE Alu -3 172 1 823 123 0 43 chr12 124933487 124933625 -19348864 - FLAM_C SINE Alu -1 132 1 2395 85 3 0 chr12 124934670 124934975 -19347514 + AluSq SINE Alu 1 306 -7 1767 256 45 30 chr12 124935721 124936381 -19346108 + L1MC4 LINE L1 7249 7918 -124 22 0 0 0 chr12 124936387 124936409 -19346080 + AT_rich Low_complexity Low_complexity 1 22 0 2332 115 0 0 chr12 124937358 124937663 -19344826 + AluSx SINE Alu 2 306 -6 21 82 0 0 chr12 124937792 124937841 -19344648 + AT_rich Low_complexity Low_complexity 1 49 0 458 221 92 15 chr12 124938243 124938374 -19344115 - MIR SINE MIR -118 144 4 1854 128 7 7 chr12 124938768 124939082 -19343407 - AluSx SINE Alu 0 314 1 1671 187 3 16 chr12 124939210 124939515 -19342974 - AluSx SINE Alu -11 301 1 2172 95 0 80 chr12 124943367 124943704 -19338785 + AluSg SINE Alu 1 310 0 516 276 213 19 chr12 124943984 124944303 -19338186 - L1ME4a LINE L1 -175 5946 5566 245 192 24 67 chr12 124944456 124944590 -19337899 + MIR SINE MIR 34 261 -1 1931 121 57 7 chr12 124944670 124944951 -19337538 - AluSx SINE Alu -17 295 1 2137 57 40 27 chr12 124945080 124945378 -19337111 - AluY SINE Alu -7 304 3 2528 52 0 3 chr12 124945886 124946192 -19336297 + AluSc SINE Alu 1 305 -4 192 40 0 0 chr12 124946330 124946355 -19336134 + (TG)n Simple_repeat Simple_repeat 1 25 0 2251 63 10 27 chr12 124946451 124946750 -19335739 + AluY SINE Alu 18 311 0 1083 62 19 6 chr12 124947208 124947369 -19335120 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 298 180 0 0 chr12 124947373 124947423 -19335066 - AluS SINE Alu -21 280 231 186 167 0 0 chr12 124947501 124947537 -19334952 + (TG)n Simple_repeat Simple_repeat 2 37 0 750 260 37 29 chr12 124947966 124948212 -19334277 - MIR SINE MIR 0 262 15 807 306 47 47 chr12 124948621 124948704 -19333785 + L1MC4a LINE L1 5339 5421 -2387 2196 132 0 0 chr12 124948704 124949015 -19333474 + AluSx SINE Alu 1 311 -1 807 306 47 47 chr12 124949015 124949533 -19332956 + L1MC4a LINE L1 5420 5940 -1868 348 314 33 8 chr12 124949898 124950019 -19332470 - MIR SINE MIR -126 136 13 396 325 43 37 chr12 124950451 124950639 -19331850 - MIR3 SINE MIR -11 197 9 1839 151 3 41 chr12 124950860 124951177 -19331312 - AluSx SINE Alu -7 305 1 847 247 150 35 chr12 124951325 124951739 -19330750 - L1MC4a LINE L1 -1931 5877 5512 1588 178 76 12 chr12 124951739 124952082 -19330407 - MLT1A1 LTR MaLR 0 365 1 847 247 150 35 chr12 124952082 124952111 -19330378 - L1MC4a LINE L1 -2296 5512 5488 2016 145 51 0 chr12 124952111 124952442 -19330047 - MER7A DNA MER2_type 0 346 1 847 247 150 35 chr12 124952442 124952511 -19329978 - L1MC4a LINE L1 -2320 5488 5305 1602 164 71 0 chr12 124952540 124952809 -19329680 - AluJo SINE Alu -24 288 1 1979 130 0 53 chr12 124952982 124953018 -19329471 - AluSx SINE Alu -3 309 273 210 37 0 0 chr12 124953018 124953045 -19329444 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1979 130 0 53 chr12 124953045 124953331 -19329158 - AluSx SINE Alu -39 273 4 224 297 23 86 chr12 124953400 124953528 -19328961 - MIR SINE MIR -66 142 23 * 448 297 90 31 chr12 124953517 124953739 -19328750 + MIR SINE MIR 24 258 -4 1226 134 127 96 chr12 124953844 124954135 -19328354 - AluJb SINE Alu -7 305 6 199 225 0 0 chr12 124954399 124954439 -19328050 + L2 LINE L2 3220 3259 -13 231 36 0 0 chr12 124954441 124954469 -19328020 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 191 229 115 33 chr12 124954485 124954546 -19327943 + MIR SINE MIR 177 242 -20 425 242 30 0 chr12 124954615 124954714 -19327775 + MIR SINE MIR 45 146 -116 406 281 133 80 chr12 124954768 124955256 -19327233 + L1M2 LINE L1 776 1289 -5560 210 231 0 0 chr12 124955256 124955295 -19327194 + G-rich Low_complexity Low_complexity 5 43 0 21 57 0 0 chr12 124955360 124955395 -19327094 + GC_rich Low_complexity Low_complexity 1 35 0 1175 226 67 94 chr12 124956041 124956450 -19326039 + L1MEc LINE L1 1419 1795 -4601 2339 85 0 41 chr12 124956450 124956768 -19325721 + AluSx SINE Alu 1 305 -7 1175 226 67 94 chr12 124956768 124957200 -19325289 + L1MEc LINE L1 1795 2237 -4159 21 36 0 0 chr12 124957367 124957395 -19325094 + AT_rich Low_complexity Low_complexity 1 28 0 195 69 0 0 chr12 124958349 124958378 -19324111 + (T)n Simple_repeat Simple_repeat 1 29 0 2278 103 7 0 chr12 124959457 124959767 -19322722 - AluSp SINE Alu -1 312 1 1919 113 37 10 chr12 124960209 124960509 -19321980 - AluSg SINE Alu -2 308 1 1897 62 22 113 chr12 124961144 124961464 -19321025 - AluYb8 SINE Alu -10 308 18 192 40 0 0 chr12 124961560 124961585 -19320904 + (CA)n Simple_repeat Simple_repeat 1 25 0 2518 56 0 3 chr12 124961723 124962029 -19320460 - AluSc SINE Alu -4 305 1 2259 84 0 17 chr12 124962345 124962644 -19319845 + AluSc SINE Alu 1 294 -15 192 36 36 0 chr12 124963110 124963138 -19319351 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 415 219 67 25 chr12 124963138 124963248 -19319241 - FLAM_C SINE Alu -175 137 2 198 0 0 0 chr12 124963305 124963327 -19319162 + (T)n Simple_repeat Simple_repeat 1 22 0 508 43 0 14 chr12 124963368 124963437 -19319052 + L1PA11 LINE L1 5998 6065 -109 2073 97 6 13 chr12 124963438 124963749 -19318740 + AluSc SINE Alu 1 309 0 189 0 0 0 chr12 124963754 124963775 -19318714 + (CA)n Simple_repeat Simple_repeat 2 22 0 2134 102 23 0 chr12 124964454 124964757 -19317732 - AluSx SINE Alu -2 310 1 405 316 26 66 chr12 124965009 124965281 -19317208 - MIR SINE MIR 0 262 2 875 71 94 0 chr12 124965686 124965813 -19316676 + MER85 DNA T2_type 1 139 0 458 340 4 9 chr12 124966142 124966300 -19316189 + MIR3 SINE MIR 1 160 -48 297 325 170 36 chr12 124966444 124966638 -19315851 + L3 LINE CR1 206 425 -1152 4807 245 92 39 chr12 124966714 124967081 -19315408 + HAL1 LINE L1 2 348 -2159 1560 184 0 4 chr12 124967081 124967358 -19315131 + AluJb SINE Alu 1 276 -36 182 61 0 30 chr12 124967364 124967397 -19315092 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 4807 245 92 39 chr12 124967397 124968943 -19313546 + HAL1 LINE L1 352 2024 -483 879 207 28 18 chr12 124968943 124969160 -19313329 + AluJo SINE Alu 1 219 -93 487 191 22 22 chr12 124969184 124969362 -19313127 + G-rich Low_complexity Low_complexity 1 178 0 511 251 108 35 chr12 124969401 124969660 -19312829 + HAL1 LINE L1 2230 2507 0 416 307 129 42 chr12 124970190 124970499 -19311990 + L3 LINE CR1 844 1179 -398 258 370 132 7 chr12 124970644 124970925 -19311564 + L3 LINE CR1 1248 1563 -14 814 225 120 0 chr12 124970998 124971198 -19311291 + MER58A DNA MER1_type 1 224 0 444 269 14 7 chr12 124971241 124971382 -19311107 + L1MEc LINE L1 63 204 -6192 987 312 63 38 chr12 124971385 124972158 -19310331 + L1MEc LINE L1 321 1113 -5283 21 0 0 0 chr12 124972659 124972680 -19309809 + AT_rich Low_complexity Low_complexity 1 21 0 371 354 108 0 chr12 124973378 124973536 -19308953 + L2 LINE L2 3092 3266 -6 225 139 0 0 chr12 124974329 124974372 -19308117 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 278 184 0 17 chr12 124975750 124975817 -19306672 - MLT1J LTR MaLR -333 178 137 281 259 82 12 chr12 124975838 124975923 -19306566 - MLT1L LTR MaLR -518 97 7 326 311 28 9 chr12 124976130 124976236 -19306253 - MIR SINE MIR -42 220 113 2389 60 3 13 chr12 124976582 124976896 -19305593 - AluY SINE Alu 0 311 1 1891 127 0 0 chr12 124976915 124977198 -19305291 - AluSx SINE Alu -29 283 1 490 160 30 50 chr12 124977204 124977304 -19305185 + MIR SINE MIR 65 162 -100 483 215 99 8 chr12 124977443 124977564 -19304925 + MIR SINE MIR 61 192 -70 658 245 83 26 chr12 124977613 124977805 -19304684 + MLT1K LTR MaLR 239 441 -147 2135 112 13 0 chr12 124977830 124978133 -19304356 - AluSx SINE Alu -5 307 1 1720 144 19 19 chr12 124978408 124978720 -19303769 - AluJo SINE Alu 0 312 1 319 302 102 63 chr12 124979617 124979815 -19302674 - L2 LINE L2 -3 3310 3098 1759 157 3 7 chr12 124979815 124980108 -19302381 + AluSx SINE Alu 1 292 -20 319 302 102 63 chr12 124980108 124980164 -19302325 - L2 LINE L2 -215 3098 3046 1766 149 151 44 chr12 124980165 124980499 -19301990 - MSTB1 LTR MaLR 0 432 135 2374 77 3 3 chr12 124980499 124980810 -19301679 - AluSp SINE Alu 0 313 3 2198 99 0 3 chr12 124980812 124981114 -19301375 - AluY SINE Alu -9 302 2 1766 149 151 44 chr12 124981114 124981166 -19301323 - MSTB1 LTR MaLR -297 135 1 238 208 0 21 chr12 124981171 124981219 -19301270 - LTR67 LTR ERVL 0 557 511 277 229 46 144 chr12 124981603 124981756 -19300733 + MLT1J LTR MaLR 111 248 -263 415 219 67 25 chr12 124982334 124982480 -19300009 - FLAM_C SINE Alu 0 143 2 198 0 0 0 chr12 124982537 124982559 -19299930 + (T)n Simple_repeat Simple_repeat 1 22 0 878 73 57 146 chr12 124982600 124982670 -19299819 + L1PA11 LINE L1 5998 6073 -101 1975 115 10 0 chr12 124982670 124982965 -19299524 + AluSc SINE Alu 1 298 -11 878 73 57 146 chr12 124982965 124983086 -19299403 + L1PA11 LINE L1 6073 6172 -2 312 206 15 15 chr12 124983588 124983656 -19298833 - L1MC4 LINE L1 -1339 6703 6636 2213 90 0 0 chr12 124983657 124983945 -19298544 - AluSg SINE Alu -22 288 1 267 245 106 33 chr12 124983948 124984099 -19298390 - L1ME LINE L1 -400 5721 5560 1338 196 12 4 chr12 124984407 124984662 -19297827 - AluJb SINE Alu -53 259 3 1831 167 6 0 chr12 124984665 124984994 -19297495 - L1M4 LINE L1 -577 5607 5277 3621 209 83 50 chr12 124985014 124985115 -19297374 - L1M4c LINE L1 -3960 2686 2590 1627 154 82 17 chr12 124985115 124985408 -19297081 - AluJb SINE Alu 0 312 1 3621 209 83 50 chr12 124985408 124985447 -19297042 - L1M4c LINE L1 -4056 2590 2554 1978 140 0 0 chr12 124985447 124985739 -19296750 - AluSx SINE Alu -16 296 5 3621 209 83 50 chr12 124985739 124987354 -19295135 - L1M4c LINE L1 -4092 2554 835 180 0 0 0 chr12 124987420 124987440 -19295049 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 897 264 20 5 chr12 124987516 124987717 -19294772 + MLT1E LTR MaLR 388 591 -2 305 186 171 116 chr12 124988278 124988321 -19294168 + MIR SINE MIR 117 156 -106 1971 139 7 0 chr12 124988321 124988622 -19293867 + AluSx SINE Alu 1 303 -9 305 186 171 116 chr12 124988622 124988707 -19293782 + MIR SINE MIR 156 252 -10 2063 118 164 13 chr12 124989061 124989433 -19293056 - MSTA LTR MaLR 0 428 1 519 281 35 55 chr12 124989569 124989808 -19292681 - MIR SINE MIR -10 252 14 2242 131 123 5 chr12 124990569 124990952 -19291537 + MSTA LTR MaLR 1 428 0 455 239 15 52 chr12 124991075 124991209 -19291280 + MIR SINE MIR 133 261 -1 478 263 98 8 chr12 124991262 124991395 -19291094 - L2 LINE L2 0 3272 3128 454 188 159 29 chr12 124991441 124991579 -19290910 - MIR SINE MIR -1 261 106 1702 128 4 0 chr12 124991863 124992106 -19290383 + AluSx SINE Alu 8 251 -61 203 0 37 0 chr12 124992106 124992133 -19290356 + (CAA)n Simple_repeat Simple_repeat 1 28 0 2102 154 26 23 chr12 124992238 124992628 -19289861 + Tigger6 DNA MER2_type 4 394 -1203 2051 114 0 0 chr12 124992629 124992952 -19289537 + AluSx SINE Alu 1 323 0 1862 161 48 21 chr12 124992970 124993305 -19289184 - MLT2D LTR ERVL -70 344 1 2328 177 49 45 chr12 124993316 124993593 -19288896 + Tigger6 DNA MER2_type 1066 1347 -250 1728 137 50 4 chr12 124993593 124993871 -19288618 - AluJb SINE Alu -21 291 1 2328 177 49 45 chr12 124993871 124994123 -19288366 + Tigger6 DNA MER2_type 1347 1597 0 2073 110 16 7 chr12 124994241 124994550 -19287939 - AluSx SINE Alu 0 312 1 270 235 76 67 chr12 124995028 124995079 -19287410 - L1ME4a LINE L1 -36 6085 6036 1717 182 0 0 chr12 124995079 124995375 -19287114 + AluJo SINE Alu 1 296 -16 270 235 76 67 chr12 124995375 124995442 -19287047 - L1ME4a LINE L1 -85 6036 5966 225 263 285 7 chr12 124995452 124995589 -19286900 + MIR SINE MIR 8 182 -80 1670 205 0 0 chr12 124995664 124995976 -19286513 - AluJo SINE Alu 0 312 1 1875 103 0 0 chr12 124996123 124996376 -19286113 + AluSq SINE Alu 9 261 -52 333 253 30 10 chr12 124996407 124996506 -19285983 + MIR SINE MIR 46 146 -62 1543 203 52 12 chr12 124996753 124997083 -19285406 + MLT1A1 LTR MaLR 6 348 -17 2066 108 14 0 chr12 124997165 124997453 -19285036 - AluSx SINE Alu -20 292 1 305 337 48 0 chr12 124997559 124997642 -19284847 - L2 LINE L2 -43 3229 3143 849 260 73 28 chr12 124997800 124998158 -19284331 - LTR16A1 LTR ERVL -39 418 45 1416 191 22 7 chr12 124998252 124998554 -19283935 + AluJo SINE Alu 1 306 0 333 263 116 0 chr12 124998569 124998664 -19283825 - MIR3 SINE MIR -10 198 93 790 277 62 28 chr12 124998676 124998869 -19283620 - MER102b DNA MER1_type -1096 332 122 288 0 0 0 chr12 124998869 124998901 -19283588 + (TG)n Simple_repeat Simple_repeat 2 33 0 790 277 62 28 chr12 124998901 124999028 -19283461 - MER102b DNA MER1_type -1306 122 1 1681 156 16 71 chr12 124999282 124999322 -19283167 - L1MB5 LINE L1 0 6174 6133 207 0 0 0 chr12 124999322 124999345 -19283144 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2125 102 0 0 chr12 124999345 124999629 -19282860 - AluSx SINE Alu -28 284 1 1681 156 16 71 chr12 124999629 124999721 -19282768 - L1MB5 LINE L1 -40 6134 6038 1760 154 0 38 chr12 124999721 125000040 -19282449 - AluJo SINE Alu -5 307 1 1681 156 16 71 chr12 125000040 125000230 -19282259 - L1MB5 LINE L1 -136 6038 5871 1861 139 6 25 chr12 125000230 125000546 -19281943 - AluSx SINE Alu -2 310 1 1681 156 16 71 chr12 125000546 125000599 -19281890 - L1MB5 LINE L1 -303 5871 5817 738 209 113 46 chr12 125000689 125000749 -19281740 - ORSL DNA AcHobo -2 273 218 2141 122 0 0 chr12 125000749 125001052 -19281437 - AluSx SINE Alu -9 303 1 738 209 113 46 chr12 125001052 125001230 -19281259 - ORSL DNA AcHobo -57 218 19 346 194 11 75 chr12 125001322 125001388 -19281101 + L2 LINE L2 3227 3287 -26 2328 71 3 0 chr12 125001388 125001685 -19280804 - AluSp SINE Alu -15 298 1 346 194 11 75 chr12 125001685 125001711 -19280778 + L2 LINE L2 3287 3313 0 1966 103 0 0 chr12 125001733 125001994 -19280495 - AluSg SINE Alu -49 261 1 2291 178 69 6 chr12 125001994 125002460 -19280029 + L1MB7 LINE L1 5690 6184 0 1972 104 0 32 chr12 125002843 125003152 -19279337 + AluSx SINE Alu 1 299 -13 628 199 0 37 chr12 125003350 125003486 -19279003 - FLAM_A SINE Alu -2 131 1 992 245 65 4 chr12 125003532 125003777 -19278712 + MLT1C LTR MaLR 208 467 0 2021 125 7 0 chr12 125003967 125004270 -19278219 - AluSx SINE Alu -7 305 1 569 241 35 53 chr12 125004565 125004735 -19277754 - MIR SINE MIR -95 167 1 294 209 15 15 chr12 125004689 125004756 -19277733 + MIR SINE MIR 39 105 -157 * 929 135 0 7 chr12 125004781 125004929 -19277560 - FRAM SINE Alu -6 170 24 2134 120 0 0 chr12 125004934 125005234 -19277255 - AluSx SINE Alu -12 300 1 550 250 70 19 chr12 125005242 125005398 -19277091 + MIR SINE MIR 99 262 0 304 243 262 10 chr12 125006183 125006286 -19276203 - L2 LINE L2 0 3313 3185 648 163 0 0 chr12 125006358 125006456 -19276033 + FRAM SINE Alu 19 116 -60 801 284 107 31 chr12 125006466 125006783 -19275706 - MLT1J2 LTR MaLR 0 450 110 450 353 8 38 chr12 125007001 125007239 -19275250 + MIR SINE MIR 31 261 -1 500 296 35 44 chr12 125007254 125007480 -19275009 + MIR SINE MIR 39 262 0 234 222 19 0 chr12 125007489 125007543 -19274946 - MIR SINE MIR -49 213 159 855 161 13 0 chr12 125007907 125008056 -19274433 - AluJb SINE Alu -25 287 137 205 49 0 148 chr12 125008248 125008309 -19274180 + (CAGGA)n Simple_repeat Simple_repeat 1 52 0 306 0 0 0 chr12 125008904 125008938 -19273551 + (TG)n Simple_repeat Simple_repeat 1 34 0 423 250 81 0 chr12 125009332 125009456 -19273033 + MIR SINE MIR 47 180 -82 1455 168 87 19 chr12 125009457 125009766 -19272723 + MER63B DNA MER1_type 1 330 -106 2061 108 10 0 chr12 125009766 125010061 -19272428 - AluSx SINE Alu -14 298 1 1808 156 20 3 chr12 125010072 125010374 -19272115 - AluJb SINE Alu -1 311 5 547 264 106 25 chr12 125010499 125010734 -19271755 + MIR SINE MIR 1 254 -8 2059 123 0 0 chr12 125011041 125011334 -19271155 + AluSx SINE Alu 1 293 -19 1802 153 0 0 chr12 125011337 125011664 -19270825 + AluSx SINE Alu 1 327 0 1858 116 29 4 chr12 125012191 125012468 -19270021 + AluSx SINE Alu 29 312 0 583 214 141 39 chr12 125012630 125012836 -19269653 - MIR SINE MIR 0 262 36 607 172 75 22 chr12 125012902 125013036 -19269453 - MER96 DNA MER1_type? -2 173 33 468 276 37 15 chr12 125013444 125013578 -19268911 + MIR SINE MIR 14 150 -112 601 203 37 37 chr12 125013599 125013798 -19268691 - MLT1C LTR MaLR -2 465 217 2067 130 3 0 chr12 125013861 125014146 -19268343 + AluSx SINE Alu 3 288 -24 342 0 0 0 chr12 125014150 125014188 -19268301 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 373 207 89 71 chr12 125014264 125014433 -19268056 - MLT1L LTR MaLR -385 230 59 738 225 0 0 chr12 125014460 125014589 -19267900 - AluJb SINE Alu -35 277 149 184 322 267 7 chr12 125014913 125015059 -19267430 - MIR SINE MIR -71 191 8 1981 139 4 0 chr12 125015187 125015488 -19267001 + AluSx SINE Alu 1 302 0 809 167 0 0 chr12 125015496 125015628 -19266861 + FLAM_C SINE Alu 2 133 0 2245 112 10 10 chr12 125015634 125015946 -19266543 + AluSx SINE Alu 1 312 0 189 0 0 0 chr12 125015951 125015972 -19266517 + (CA)n Simple_repeat Simple_repeat 2 22 0 2284 102 23 0 chr12 125016652 125016955 -19265534 - AluSx SINE Alu -2 310 1 396 316 26 66 chr12 125017207 125017479 -19265010 - MIR SINE MIR 0 262 2 874 71 94 0 chr12 125017884 125018011 -19264478 + MER85 DNA T2_type 1 139 0 460 340 4 9 chr12 125018340 125018498 -19263991 + MIR3 SINE MIR 1 160 -48 2530 55 10 0 chr12 125019361 125019690 -19262799 - AluY SINE Alu 0 332 1 189 245 20 0 chr12 125019698 125019747 -19262742 - MIR SINE MIR -65 143 94 2204 102 41 0 chr12 125019860 125020153 -19262336 - AluSx SINE Alu -5 307 3 2237 66 16 35 chr12 125020270 125020587 -19261902 + AluY SINE Alu 1 311 0 1083 62 19 6 chr12 125021045 125021206 -19261283 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 299 180 0 0 chr12 125021210 125021260 -19261229 - AluS SINE Alu -21 279 230 186 167 0 0 chr12 125021338 125021374 -19261115 + (TG)n Simple_repeat Simple_repeat 2 37 0 791 260 37 29 chr12 125021803 125022049 -19260440 - MIR SINE MIR 0 262 15 887 299 52 46 chr12 125022456 125022541 -19259948 + L1MC4a LINE L1 5337 5420 -2388 2230 132 0 0 chr12 125022541 125022852 -19259637 + AluSx SINE Alu 1 311 -1 887 299 52 46 chr12 125022852 125023375 -19259114 + L1MC4a LINE L1 5420 5949 -1859 370 331 16 8 chr12 125023732 125023856 -19258633 - MIR SINE MIR -125 137 13 413 325 43 37 chr12 125024288 125024476 -19258013 - MIR3 SINE MIR -11 197 9 1873 153 3 41 chr12 125024694 125025014 -19257475 - AluSx SINE Alu -4 308 1 899 250 149 35 chr12 125025160 125025576 -19256913 - L1MC4a LINE L1 -1929 5879 5512 1668 181 76 12 chr12 125025576 125025919 -19256570 - MLT1A1 LTR MaLR 0 365 1 899 250 149 35 chr12 125025919 125025948 -19256541 - L1MC4a LINE L1 -2296 5512 5488 2078 145 51 0 chr12 125025948 125026279 -19256210 - MER7A DNA MER2_type 0 346 1 899 250 149 35 chr12 125026279 125026348 -19256141 - L1MC4a LINE L1 -2320 5488 5305 1635 164 71 0 chr12 125026377 125026646 -19255843 - AluJo SINE Alu -24 288 1 2021 130 0 53 chr12 125026819 125026855 -19255634 - AluSx SINE Alu -3 309 273 210 37 0 0 chr12 125026855 125026882 -19255607 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2021 130 0 53 chr12 125026882 125027168 -19255321 - AluSx SINE Alu -39 273 4 222 297 23 86 chr12 125027237 125027365 -19255124 - MIR SINE MIR -66 142 23 * 467 297 90 31 chr12 125027354 125027576 -19254913 + MIR SINE MIR 24 258 -4 1258 134 127 96 chr12 125027681 125027972 -19254517 - AluJb SINE Alu -7 305 6 202 225 0 0 chr12 125028236 125028276 -19254213 + L2 LINE L2 3220 3259 -13 231 36 0 0 chr12 125028278 125028306 -19254183 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 199 229 115 33 chr12 125028322 125028383 -19254106 + MIR SINE MIR 177 242 -20 195 216 0 0 chr12 125028354 125028391 -19254098 + L2 LINE L2 3218 3254 -18 * 450 242 30 0 chr12 125028452 125028551 -19253938 + MIR SINE MIR 45 146 -116 24 32 0 0 chr12 125028797 125028828 -19253661 + GC_rich Low_complexity Low_complexity 1 31 0 195 100 0 0 chr12 125028835 125028865 -19253624 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 214 200 33 0 chr12 125028915 125028975 -19253514 + C-rich Low_complexity Low_complexity 6 67 0 451 271 128 0 chr12 125029650 125029783 -19252706 + L2 LINE L2 3153 3302 -11 1595 129 47 107 chr12 125029785 125030103 -19252386 + AluSx SINE Alu 1 299 -13 3030 78 22 0 chr12 125030155 125030568 -19251921 + MER41A LTR ERV1 1 422 -132 401 266 43 7 chr12 125030638 125030777 -19251712 + MLT1G1 LTR MaLR 43 186 -409 378 324 0 32 chr12 125031472 125031657 -19250832 + C-rich Low_complexity Low_complexity 1 179 0 530 176 8 69 chr12 125033198 125033329 -19249160 - FLAM_C SINE Alu -10 123 1 2635 49 0 0 chr12 125033628 125033936 -19248553 + AluY SINE Alu 1 308 -3 2148 122 3 7 chr12 125033945 125034248 -19248241 + AluSq SINE Alu 1 302 -11 263 267 7 0 chr12 125034433 125034568 -19247921 + (TG)n Simple_repeat Simple_repeat 2 137 0 232 189 0 38 chr12 125034642 125034748 -19247741 + (TG)n Simple_repeat Simple_repeat 1 102 0 459 290 17 0 chr12 125034776 125034952 -19247537 + (TG)n Simple_repeat Simple_repeat 2 180 0 374 239 7 14 chr12 125034964 125035254 -19247235 + (TG)n Simple_repeat Simple_repeat 1 288 0 319 179 137 42 chr12 125036043 125036138 -19246351 + MIR SINE MIR 118 221 -41 237 139 0 0 chr12 125036178 125036221 -19246268 + (CAT)n Simple_repeat Simple_repeat 1 43 0 2071 138 0 19 chr12 125036309 125036620 -19245869 + AluSx SINE Alu 1 305 -7 730 162 0 44 chr12 125036801 125036937 -19245552 + FLAM_A SINE Alu 1 130 -3 375 339 0 0 chr12 125037085 125037194 -19245295 + MIR SINE MIR 47 155 -107 2595 98 5 0 chr12 125037197 125037564 -19244925 + MER41A LTR ERV1 1 369 -185 1182 67 0 0 chr12 125037564 125037699 -19244790 + AluSq/x SINE Alu 1 135 -177 834 73 41 0 chr12 125037699 125037822 -19244667 + MER41A LTR ERV1 427 554 0 190 323 129 16 chr12 125037961 125038085 -19244404 - L2 LINE L2 -1 3271 3134 2354 96 10 0 chr12 125038367 125038670 -19243819 + AluSq SINE Alu 1 306 -7 2121 138 0 3 chr12 125038688 125038992 -19243497 + AluSx SINE Alu 1 303 -9 502 140 86 0 chr12 125038992 125039085 -19243404 - MLT1C LTR MaLR -302 165 65 438 291 8 8 chr12 125039157 125039274 -19243215 + MIR SINE MIR 34 150 -58 2393 112 0 0 chr12 125039275 125039587 -19242902 + AluSx SINE Alu 1 312 0 291 317 124 7 chr12 125040596 125040741 -19241748 + MIR SINE MIR 34 195 -67 867 248 53 104 chr12 125040750 125040783 -19241706 - LTR67 LTR ERVL -2 555 522 867 221 89 0 chr12 125040783 125040973 -19241516 + MER63A DNA MER1_type 4 210 0 867 248 53 104 chr12 125040973 125041410 -19241079 - LTR67 LTR ERVL -35 522 109 336 200 42 43 chr12 125041457 125041618 -19240871 - MLT1D LTR MaLR -152 353 90 * 960 202 42 24 chr12 125041610 125041823 -19240666 - MER58A DNA MER1_type -6 218 2 2191 108 3 3 chr12 125041981 125042269 -19240220 - AluSx SINE Alu -14 298 11 946 159 0 0 chr12 125042282 125042414 -19240075 - FLAM_C SINE Alu -11 132 1 412 293 122 19 chr12 125042835 125043008 -19239481 + MIR SINE MIR 31 230 -32 2254 134 0 0 chr12 125043008 125043314 -19239175 + AluSx SINE Alu 1 306 -6 412 293 122 19 chr12 125043314 125043345 -19239144 + MIR SINE MIR 230 256 -6 945 162 0 7 chr12 125043401 125043555 -19238934 - FRAM SINE Alu -3 173 21 523 300 6 11 chr12 125043975 125044155 -19238334 + AluSg/x SINE Alu 109 287 -25 181 57 57 0 chr12 125044158 125044193 -19238296 + A-rich Low_complexity Low_complexity 24 60 0 507 174 10 0 chr12 125044193 125044291 -19238198 - L1M4 LINE L1 -486 5698 5600 1318 207 4 19 chr12 125044293 125044564 -19237925 - AluJb SINE Alu -5 307 41 28 48 0 0 chr12 125044646 125044688 -19237801 + GC_rich Low_complexity Low_complexity 1 42 0 258 315 19 19 chr12 125044843 125045005 -19237484 + C-rich Low_complexity Low_complexity 4 165 0 1373 134 5 0 chr12 125045302 125045503 -19236986 + AluJb SINE Alu 110 311 -1 432 289 32 19 chr12 125045657 125045813 -19236676 + MIR SINE MIR 69 226 -36 2265 124 0 6 chr12 125045950 125046264 -19236225 - AluSx SINE Alu 0 312 1 24 0 0 0 chr12 125046266 125046290 -19236199 + AT_rich Low_complexity Low_complexity 1 24 0 1027 284 81 38 chr12 125047355 125047870 -19234619 - L2 LINE L2 -1 3312 2771 1999 124 14 0 chr12 125047870 125048182 -19234307 + AluSq SINE Alu 1 313 0 1027 284 81 38 chr12 125048182 125048204 -19234285 - L2 LINE L2 -542 2771 2751 264 307 53 18 chr12 125048569 125048683 -19233806 + MIR SINE MIR 60 177 -85 805 189 0 7 chr12 125048833 125048976 -19233513 + FRAM SINE Alu 1 142 -34 191 143 0 24 chr12 125049004 125049046 -19233443 + (GA)n Simple_repeat Simple_repeat 2 42 0 185 276 197 0 chr12 125049653 125049729 -19232760 + L2 LINE L2 3180 3270 -2 231 341 62 53 chr12 125050471 125050679 -19231810 + MIR SINE MIR 20 229 -33 788 203 133 77 chr12 125050821 125051261 -19231228 + MLT1C LTR MaLR 1 466 -1 2643 61 0 3 chr12 125051567 125051878 -19230611 + AluY SINE Alu 1 310 -1 2185 118 0 19 chr12 125052383 125052698 -19229791 - AluSx SINE Alu -3 309 1 449 310 29 6 chr12 125052953 125053127 -19229362 - L1MC4a LINE L1 -1871 5937 5760 290 335 165 0 chr12 125053290 125053448 -19229041 - MIR SINE MIR -4 258 75 355 298 39 10 chr12 125053636 125053740 -19228749 - L2 LINE L2 -1 3312 3206 1086 235 96 35 chr12 125053799 125053879 -19228610 + MLT1C LTR MaLR 49 123 -344 2030 158 27 24 chr12 125053879 125054253 -19228236 - THE1C LTR MaLR 0 375 1 1086 235 96 35 chr12 125054253 125054567 -19227922 + MLT1C LTR MaLR 123 467 0 2227 130 0 0 chr12 125054583 125054883 -19227606 - AluSx SINE Alu -12 300 1 258 287 130 0 chr12 125055191 125055299 -19227190 - L2 LINE L2 -9 3263 3142 2334 119 30 49 chr12 125055628 125055929 -19226560 + THE1B LTR MaLR 1 295 -69 2154 107 0 42 chr12 125055929 125056239 -19226250 + AluSg SINE Alu 1 297 -13 2334 119 30 49 chr12 125056239 125056307 -19226182 + THE1B LTR MaLR 295 363 -1 238 170 21 0 chr12 125056759 125056806 -19225683 - Charlie8 DNA MER1_type -1013 1404 1357 183 276 171 0 chr12 125057233 125057309 -19225180 - L2 LINE L2 0 3272 3184 1727 101 4 0 chr12 125057321 125057548 -19224941 + AluSg/x SINE Alu 83 310 0 194 156 0 0 chr12 125057593 125057625 -19224864 - L2 LINE L2 -23 3249 3218 386 211 174 0 chr12 125057831 125057940 -19224549 - MIR SINE MIR -127 135 8 285 224 66 0 chr12 125057950 125058026 -19224463 - MIR SINE MIR -76 186 106 1183 216 83 23 chr12 125058044 125058344 -19224145 + MER96B DNA MER1_type? 1 331 -86 819 134 8 0 chr12 125058344 125058502 -19223987 - FLAM_C SINE Alu 0 159 1 1183 216 83 23 chr12 125058502 125058584 -19223905 + MER96B DNA MER1_type? 331 407 -10 1631 137 0 77 chr12 125058639 125058939 -19223550 - AluJo SINE Alu -23 289 13 307 226 89 103 chr12 125059005 125059151 -19223338 - MIR SINE MIR -78 184 41 25 31 0 0 chr12 125059628 125059660 -19222829 + GC_rich Low_complexity Low_complexity 1 32 0 241 315 54 47 chr12 125060134 125060283 -19222206 - MIR SINE MIR -82 180 31 2220 102 9 43 chr12 125060322 125060644 -19221845 - AluSx SINE Alu -1 311 1 842 163 0 0 chr12 125060654 125060783 -19221706 - FLAM_C SINE Alu -4 129 1 2408 49 39 33 chr12 125060785 125061092 -19221397 - AluSg1 SINE Alu 0 309 1 2420 158 65 11 chr12 125061406 125061867 -19220622 - MER66B LTR ERV1 0 486 1 487 262 27 21 chr12 125061937 125061981 -19220508 - MIR3 SINE MIR -79 183 141 2281 103 6 6 chr12 125061981 125062293 -19220196 - AluSx SINE Alu 0 312 1 487 262 27 21 chr12 125062293 125062427 -19220062 - MIR3 SINE MIR -121 141 4 486 264 18 18 chr12 125062734 125062897 -19219592 + MER103 DNA DNA 2 164 -2 237 310 86 0 chr12 125063315 125063373 -19219116 - L2 LINE L2 -86 3186 3124 1093 158 6 0 chr12 125063433 125063604 -19218885 + FRAM SINE Alu 1 165 -11 354 209 61 76 chr12 125063727 125064005 -19218484 - L1ME4a LINE L1 -5 6116 5847 202 260 20 0 chr12 125064194 125064244 -19218245 - L2 LINE L2 -300 2972 2922 2358 109 0 0 chr12 125064244 125064548 -19217941 + AluSx SINE Alu 1 304 -8 2142 125 20 0 chr12 125065145 125065441 -19217048 + AluSx SINE Alu 6 307 -5 266 290 210 0 chr12 125066088 125066212 -19216277 + MIR SINE MIR 46 195 -67 795 164 0 15 chr12 125066303 125066437 -19216052 + FLAM_C SINE Alu 1 132 -1 1929 154 0 26 chr12 125066453 125066765 -19215724 + AluJo SINE Alu 1 304 -8 354 119 48 12 chr12 125066809 125066893 -19215596 + L1MB3 LINE L1 6084 6170 -13 596 246 16 0 chr12 125066893 125067019 -19215470 - FLAM_A SINE Alu -5 128 1 2108 162 0 0 chr12 125067074 125067382 -19215107 - AluSx SINE Alu -4 308 1 2186 114 7 3 chr12 125067392 125067689 -19214800 - AluSx SINE Alu -14 298 1 348 0 0 21 chr12 125067694 125067741 -19214748 + MADE1 DNA Mariner 35 80 0 410 251 216 23 chr12 125067745 125067916 -19214573 - MIR SINE MIR -43 219 16 220 355 153 22 chr12 125067995 125068223 -19214266 - L2 LINE L2 0 3272 3015 2078 133 23 3 chr12 125068224 125068526 -19213963 - AluSx SINE Alu -4 308 1 2084 159 33 40 chr12 125068848 125069302 -19213187 + L1MB7 LINE L1 5733 6183 -1 286 259 310 0 chr12 125069550 125069666 -19212823 - L2 LINE L2 -4 3309 3158 724 183 0 0 chr12 125069682 125069802 -19212687 + AluJo/FLAM SINE Alu 1 120 -182 894 163 129 0 chr12 125069803 125069972 -19212517 - AluSg/x SINE Alu 0 305 118 2166 129 3 13 chr12 125069976 125070285 -19212204 - AluSx SINE Alu -6 306 1 348 331 51 64 chr12 125070311 125070625 -19211864 - L2 LINE L2 -169 3144 2835 26 23 0 23 chr12 125071359 125071383 -19211106 + AT_rich Low_complexity Low_complexity 1 25 -18 1872 145 0 7 chr12 125071383 125071659 -19210830 - AluSx SINE Alu -22 290 17 26 23 0 23 chr12 125071659 125071678 -19210811 + AT_rich Low_complexity Low_complexity 25 43 0 794 173 83 19 chr12 125071727 125071883 -19210606 + FRAM SINE Alu 8 173 -3 991 128 15 15 chr12 125071899 125072095 -19210394 - Charlie5 DNA MER1_type -81 2531 2336 1238 121 0 6 chr12 125072095 125072261 -19210228 - AluSg/x SINE Alu -12 300 136 312 159 216 0 chr12 125072261 125072349 -19210140 - Charlie5 DNA MER1_type -263 2349 2243 560 195 17 0 chr12 125072363 125072481 -19210008 - Charlie5 DNA MER1_type -2488 124 5 1339 220 27 0 chr12 125072564 125072860 -19209629 + MLT1F1 LTR MaLR 1 304 -263 272 205 2 2 chr12 125072859 125072920 -19209569 + MLT1F LTR MaLR 485 538 -4 * 291 267 133 0 chr12 125072926 125073031 -19209458 + MIR SINE MIR 127 245 -17 2160 139 0 0 chr12 125073052 125073353 -19209136 - AluJo SINE Alu -3 309 9 192 125 0 0 chr12 125073359 125073391 -19209098 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 731 309 73 7 chr12 125073620 125073921 -19208568 + LTR16A LTR ERVL 1 321 -129 327 85 0 0 chr12 125074059 125074106 -19208383 + (TCC)n Simple_repeat Simple_repeat 1 47 0 667 144 61 0 chr12 125074205 125074337 -19208152 - MER20 DNA MER1_type -2 217 78 2260 108 7 0 chr12 125074489 125074785 -19207704 + AluSx SINE Alu 1 298 -14 872 173 0 0 chr12 125074872 125075005 -19207484 - FLAM_C SINE Alu -10 133 1 2277 106 0 7 chr12 125075588 125075891 -19206598 - AluSx SINE Alu -11 301 1 1197 137 0 0 chr12 125076042 125076210 -19206279 - AluSx SINE Alu -144 168 1 568 241 35 53 chr12 125076505 125076675 -19205814 - MIR SINE MIR -95 167 1 296 209 15 15 chr12 125076629 125076696 -19205793 + MIR SINE MIR 39 105 -157 * 1004 143 0 7 chr12 125076715 125076869 -19205620 - FRAM SINE Alu 0 176 24 2282 120 0 0 chr12 125076874 125077174 -19205315 - AluSx SINE Alu -12 300 1 546 250 70 19 chr12 125077182 125077338 -19205151 + MIR SINE MIR 99 262 0 307 243 262 10 chr12 125078122 125078225 -19204264 - L2 LINE L2 0 3313 3185 664 163 0 0 chr12 125078297 125078395 -19204094 + FRAM SINE Alu 19 116 -60 712 284 107 31 chr12 125078405 125078722 -19203767 - MLT1J2 LTR MaLR 0 450 110 461 353 8 38 chr12 125078940 125079178 -19203311 + MIR SINE MIR 31 261 -1 505 296 35 44 chr12 125079193 125079419 -19203070 + MIR SINE MIR 39 262 0 232 222 19 0 chr12 125079428 125079482 -19203007 - MIR SINE MIR -49 213 159 922 161 13 0 chr12 125079847 125079996 -19202493 - AluJb SINE Alu -25 287 137 205 49 0 148 chr12 125080188 125080249 -19202240 + (CAGGA)n Simple_repeat Simple_repeat 1 52 0 306 0 0 0 chr12 125080844 125080878 -19201611 + (TG)n Simple_repeat Simple_repeat 1 34 0 429 263 74 0 chr12 125081251 125081396 -19201093 + MIR SINE MIR 27 180 -61 1370 168 87 19 chr12 125081397 125081706 -19200783 + MER63B DNA MER1_type 1 330 -106 2208 108 10 0 chr12 125081706 125082001 -19200488 - AluSx SINE Alu -14 298 1 1959 156 20 3 chr12 125082012 125082314 -19200175 - AluJb SINE Alu -1 311 5 561 264 106 25 chr12 125082439 125082674 -19199815 + MIR SINE MIR 1 254 -8 2205 125 0 0 chr12 125082981 125083277 -19199212 + AluSx SINE Alu 1 296 -16 1938 153 0 0 chr12 125083277 125083604 -19198885 + AluSx SINE Alu 1 327 0 1997 116 29 4 chr12 125084131 125084408 -19198081 + AluSx SINE Alu 29 312 0 534 199 151 48 chr12 125084570 125084776 -19197713 - MIR SINE MIR 0 262 36 560 172 75 22 chr12 125084842 125084976 -19197513 - MER96 DNA MER1_type? -2 173 33 481 277 23 15 chr12 125085383 125085513 -19196976 + MIR SINE MIR 14 144 -118 698 225 164 89 chr12 125085539 125085801 -19196688 - MLT1C LTR MaLR -2 465 157 2398 113 0 0 chr12 125085801 125086111 -19196378 + AluSx SINE Alu 3 312 0 698 225 164 89 chr12 125086111 125086275 -19196214 - MLT1C LTR MaLR -310 157 7 231 264 0 0 chr12 125087140 125087269 -19195220 + (TG)n Simple_repeat Simple_repeat 1 129 0 279 250 0 0 chr12 125087281 125087397 -19195092 + (TG)n Simple_repeat Simple_repeat 1 116 0 233 211 0 79 chr12 125087473 125087549 -19194940 + C-rich Low_complexity Low_complexity 3 72 0 899 182 45 6 chr12 125088698 125088874 -19193615 - MER58A DNA MER1_type 0 224 42 1941 148 14 7 chr12 125088888 125089304 -19193185 - AluSx SINE Alu 0 420 3 2279 122 3 0 chr12 125089682 125089993 -19192496 + AluSp SINE Alu 1 312 -1 358 269 48 104 chr12 125090171 125090247 -19192242 + MIR SINE MIR 28 107 -155 2024 127 7 0 chr12 125090247 125090531 -19191958 + AluSx SINE Alu 3 288 -24 358 269 48 104 chr12 125090531 125090703 -19191786 + MIR SINE MIR 107 262 0 760 175 0 16 chr12 125090886 125091012 -19191477 + AluJo SINE Alu 1 124 -178 748 99 10 0 chr12 125091030 125091131 -19191358 + AluJo SINE Alu 194 295 -17 224 292 0 73 chr12 125091133 125091229 -19191260 - MIR3 SINE MIR -48 160 72 277 333 125 23 chr12 125091247 125091463 -19191026 - MIR SINE MIR -23 239 2 366 243 10 29 chr12 125091530 125091633 -19190856 + MER81 DNA DNA 1 101 -13 1982 133 20 3 chr12 125092376 125092669 -19189820 - AluJb SINE Alu -14 298 1 424 236 19 0 chr12 125092779 125092885 -19189604 - MER81 DNA DNA -5 109 2 773 214 0 8 chr12 125093657 125094026 -19188463 + (CA)n Simple_repeat Simple_repeat 1 365 0 297 254 0 0 chr12 125094026 125094093 -19188396 + (CATA)n Simple_repeat Simple_repeat 3 69 0 710 218 0 3 chr12 125094094 125094387 -19188102 + (CA)n Simple_repeat Simple_repeat 1 291 0 534 256 0 0 chr12 125094411 125094591 -19187898 + (CA)n Simple_repeat Simple_repeat 1 180 0 462 263 0 0 chr12 125094650 125094821 -19187668 + (CA)n Simple_repeat Simple_repeat 1 171 0 1886 149 44 3 chr12 125094894 125095069 -19187420 - AluJo SINE Alu -1 311 118 294 29 0 0 chr12 125095069 125095104 -19187385 + (TG)n Simple_repeat Simple_repeat 2 36 0 1886 149 44 3 chr12 125095104 125095223 -19187266 - AluJo SINE Alu -194 118 5 485 289 97 48 chr12 125095232 125095460 -19187029 - MIR SINE MIR -12 250 12 641 255 85 1 chr12 125096744 125096940 -19185549 + MIR SINE MIR 3 212 -50 2172 86 7 0 chr12 125096948 125097217 -19185272 + AluSg SINE Alu 13 283 -27 258 32 0 0 chr12 125097217 125097248 -19185241 + (CATA)n Simple_repeat Simple_repeat 2 32 0 367 251 75 32 chr12 125097268 125097455 -19185034 - ORSL DNA AcHobo 0 275 81 1737 175 17 3 chr12 125097455 125097747 -19184742 - AluJo SINE Alu -12 300 5 25 51 0 0 chr12 125097819 125097858 -19184631 + AT_rich Low_complexity Low_complexity 1 39 0 523 184 117 18 chr12 125098015 125098178 -19184311 - MER96B DNA MER1_type? -238 179 1 2170 113 0 35 chr12 125099029 125099348 -19183141 + AluSx SINE Alu 1 308 -4 612 180 18 9 chr12 125099557 125099668 -19182821 - L2 LINE L2 -25 3247 3136 931 256 58 59 chr12 125099683 125099876 -19182613 + L2 LINE L2 2779 2971 -342 2330 115 0 0 chr12 125099876 125100181 -19182308 - AluSq SINE Alu -8 305 1 2155 117 10 16 chr12 125100181 125100352 -19182137 - AluSx SINE Alu -6 306 136 2535 48 0 7 chr12 125100352 125100646 -19181843 - AluY SINE Alu -19 292 1 2155 117 10 16 chr12 125100646 125100782 -19181707 - AluSx SINE Alu -176 136 1 931 256 58 59 chr12 125100782 125101029 -19181460 + L2 LINE L2 2969 3227 -86 278 322 28 57 chr12 125101130 125101307 -19181182 - L2 LINE L2 -253 3060 2889 435 275 169 24 chr12 125101313 125101436 -19181053 + MIR SINE MIR 25 129 -133 2188 87 0 0 chr12 125101436 125101700 -19180789 + AluSc SINE Alu 32 295 -14 435 275 169 24 chr12 125101700 125101783 -19180706 + MIR SINE MIR 129 261 -1 2192 114 3 10 chr12 125101860 125102159 -19180330 + AluSg SINE Alu 1 297 -13 1167 169 202 24 chr12 125102167 125102415 -19180074 + AluSx SINE Alu 1 292 -20 337 329 102 12 chr12 125102812 125102979 -19179510 - MIR SINE MIR -35 227 46 2121 131 7 20 chr12 125103645 125103951 -19178538 - AluSx SINE Alu -8 304 3 331 217 58 0 chr12 125103960 125104029 -19178460 + MIR SINE MIR 70 142 -120 721 266 45 87 chr12 125104182 125104544 -19177945 - MLT1J LTR MaLR 0 511 136 183 42 0 0 chr12 125104544 125104568 -19177921 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1991 120 4 4 chr12 125104571 125104847 -19177642 - AluSx SINE Alu -36 276 1 721 266 45 87 chr12 125104847 125104915 -19177574 - MLT1J LTR MaLR -377 134 100 222 37 0 0 chr12 125104915 125104942 -19177547 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 721 266 45 87 chr12 125104942 125105036 -19177453 - MLT1J LTR MaLR -411 100 4 443 158 18 0 chr12 125105149 125105250 -19177239 + Charlie5 DNA MER1_type 23 127 -2485 * 954 138 67 58 chr12 125105248 125105472 -19177017 + Charlie5 DNA MER1_type 2234 2459 -153 2225 102 41 0 chr12 125105476 125105771 -19176718 + AluSx SINE Alu 1 307 -5 189 245 20 0 chr12 125105885 125105934 -19176555 + MIR SINE MIR 94 143 -65 2460 60 7 0 chr12 125105942 125106241 -19176248 + AluY SINE Alu 1 301 -10 1965 113 37 10 chr12 125106874 125107174 -19175315 + AluSg SINE Alu 1 308 -2 2374 97 7 0 chr12 125107616 125107926 -19174563 + AluSp SINE Alu 1 312 -1 195 69 0 0 chr12 125109003 125109032 -19173457 + (A)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr12 125109987 125110015 -19172474 + AT_rich Low_complexity Low_complexity 1 28 0 378 0 0 0 chr12 125110904 125110946 -19171543 + (TG)n Simple_repeat Simple_repeat 1 42 0 213 262 27 44 chr12 125111749 125111932 -19170557 + (CGGGG)n Simple_repeat Simple_repeat 1 180 0 565 282 41 81 chr12 125112529 125112778 -19169711 + L1ME3A LINE L1 5594 5852 -318 2623 99 25 3 chr12 125112778 125113133 -19169356 + THE1B LTR MaLR 1 363 -1 565 282 41 81 chr12 125113133 125113149 -19169340 + L1ME3A LINE L1 5852 5867 -303 3374 146 24 78 chr12 125113149 125113854 -19168635 - L1MB7 LINE L1 -16 6168 5502 565 282 41 81 chr12 125113854 125113956 -19168533 + L1ME3A LINE L1 5867 5947 -223 2075 114 34 13 chr12 125114009 125114307 -19168182 + AluSx SINE Alu 1 304 -8 1536 152 41 8 chr12 125114797 125115041 -19167448 - AluJo SINE Alu -15 297 46 1104 191 0 0 chr12 125115064 125115237 -19167252 - AluJo SINE Alu -139 173 1 2497 176 91 10 chr12 125115243 125115725 -19166764 + MLT1F1 LTR MaLR 41 561 -6 866 254 35 14 chr12 125115724 125115978 -19166511 - MLT1L LTR MaLR -56 559 213 * 436 261 39 8 chr12 125115961 125116091 -19166398 - MLT1L LTR MaLR -337 278 145 * 1165 280 43 39 chr12 125116102 125116289 -19166200 + LTR16B LTR ERVL 1 186 -278 2309 128 0 0 chr12 125116289 125116595 -19165894 - AluSx SINE Alu -1 311 6 1165 280 43 39 chr12 125116595 125116867 -19165622 + LTR16B LTR ERVL 186 462 -2 1256 110 0 0 chr12 125116960 125117154 -19165335 - AluY SINE Alu 0 314 121 443 104 0 15 chr12 125117154 125117221 -19165268 - AluJb SINE Alu -124 188 123 * 453 103 0 15 chr12 125117220 125117288 -19165201 - AluSc SINE Alu -122 187 121 * 478 90 0 15 chr12 125117287 125117354 -19165135 - AluSc SINE Alu -122 187 122 1649 58 0 0 chr12 125117354 125117542 -19164947 - AluY SINE Alu -123 188 1 1648 197 3 14 chr12 125117760 125118054 -19164435 + AluJo SINE Alu 1 291 -21 397 253 53 47 chr12 125118093 125118167 -19164322 - MIR SINE MIR -43 219 147 2257 72 10 7 chr12 125118167 125118458 -19164031 - AluY SINE Alu -19 292 1 397 253 53 47 chr12 125118458 125118533 -19163956 - MIR SINE MIR -115 147 69 335 248 203 8 chr12 125118730 125118863 -19163626 - MIR SINE MIR -1 261 103 448 201 36 128 chr12 125118996 125119215 -19163274 + MIR SINE MIR 51 249 -13 237 137 50 12 chr12 125119721 125119775 -19162714 + MIR SINE MIR 104 159 -103 1479 181 23 3 chr12 125120125 125120428 -19162061 + L1MB7 LINE L1 5646 5954 -230 729 148 35 0 chr12 125120428 125120543 -19161946 + Charlie3 DNA MER1_type 1 119 -2591 1853 145 0 55 chr12 125120563 125120874 -19161615 - AluJo SINE Alu -14 298 5 814 142 12 142 chr12 125121851 125122015 -19160474 - MER20 DNA MER1_type -4 215 92 1977 123 0 31 chr12 125122015 125122307 -19160182 - AluSx SINE Alu -29 283 1 814 142 12 142 chr12 125122307 125122389 -19160100 - MER20 DNA MER1_type -127 92 1 260 286 57 92 chr12 125122629 125122680 -19159809 + L2 LINE L2 2946 2997 -275 2031 138 0 46 chr12 125122680 125123007 -19159482 - AluSx SINE Alu 0 312 1 260 286 57 92 chr12 125123007 125123182 -19159307 + L2 LINE L2 2997 3164 -108 318 219 29 86 chr12 125123478 125123583 -19158906 + MIR SINE MIR 102 200 -62 564 15 0 0 chr12 125123654 125123719 -19158770 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 2223 130 3 0 chr12 125123733 125124040 -19158449 - AluSq SINE Alu -5 308 1 495 188 9 27 chr12 125124043 125124155 -19158334 - L1MA10 LINE L1 0 6334 6225 293 292 29 22 chr12 125124819 125124956 -19157533 - L1ME4a LINE L1 -21 6100 5963 609 307 83 86 chr12 125124970 125125108 -19157381 - L1MC4a LINE L1 -18 6103 5966 3351 95 31 0 chr12 125125108 125125590 -19156899 + LOR1a LTR ERV1 1 497 0 609 307 83 86 chr12 125125590 125125650 -19156839 - L1MC4a LINE L1 -155 5966 5907 2434 102 0 0 chr12 125125650 125125963 -19156526 + AluSq SINE Alu 1 313 0 609 307 83 86 chr12 125125963 125126294 -19156195 - L1MC4a LINE L1 -214 5907 5577 1678 157 7 31 chr12 125126294 125126581 -19155908 + AluJo SINE Alu 12 291 -21 2056 124 3 0 chr12 125126588 125126896 -19155593 + AluSp SINE Alu 1 309 0 609 307 83 86 chr12 125126896 125127121 -19155368 - L1MC4a LINE L1 -550 5571 5353 789 285 71 33 chr12 125127168 125127533 -19154956 - L1ME4a LINE L1 -226 5895 5517 271 217 0 17 chr12 125127534 125127594 -19154895 - MER20 DNA MER1_type -159 60 2 440 271 66 7 chr12 125127942 125128093 -19154396 - MIR SINE MIR -60 202 43 2214 116 3 13 chr12 125128895 125129198 -19153291 - AluSq SINE Alu -13 300 1 359 248 105 0 chr12 125129333 125129466 -19153023 - MER103 DNA DNA -17 149 3 270 176 0 0 chr12 125129686 125129737 -19152752 + GA-rich Low_complexity Low_complexity 2 52 0 356 207 0 0 chr12 125130095 125130182 -19152307 + A-rich Low_complexity Low_complexity 1 87 0 240 86 0 0 chr12 125130181 125130216 -19152273 + (GGGGA)n Simple_repeat Simple_repeat 5 39 0 * 812 294 51 20 chr12 125130351 125130573 -19151916 - L1ME3A LINE L1 -223 5947 5709 1413 219 16 43 chr12 125130573 125130947 -19151542 - MLT1A1 LTR MaLR -1 364 1 812 294 51 20 chr12 125130947 125131074 -19151415 - L1ME3A LINE L1 -461 5709 5587 228 343 29 19 chr12 125131241 125131346 -19151143 + MER5A DNA MER1_type 84 189 0 1944 152 0 10 chr12 125131475 125131765 -19150724 + AluJo SINE Alu 1 287 -25 905 266 144 45 chr12 125131800 125132202 -19150287 + MLT1J2 LTR MaLR 9 450 0 212 336 36 27 chr12 125132315 125132425 -19150064 + MIR SINE MIR 111 221 -41 2009 138 3 26 chr12 125132873 125133185 -19149304 - AluJb SINE Alu -7 305 1 1381 186 99 4 chr12 125133361 125133624 -19148865 + AluJo SINE Alu 1 288 -24 1541 215 58 58 chr12 125134104 125134382 -19148107 - MLT1C LTR MaLR -1 466 186 3019 159 7 5 chr12 125134382 125134935 -19147554 - L1PA16 LINE L1 -6 6160 5607 1541 215 58 58 chr12 125134935 125135122 -19147367 - MLT1C LTR MaLR -280 187 1 2126 132 0 0 chr12 125135129 125135418 -19147071 - AluSx SINE Alu -18 294 6 187 269 50 67 chr12 125135899 125135993 -19146496 + MIR SINE MIR 25 118 -144 2281 117 3 25 chr12 125135993 125136310 -19146179 - AluSx SINE Alu -2 310 1 187 269 50 67 chr12 125136310 125136334 -19146155 + MIR SINE MIR 118 141 -121 181 260 151 0 chr12 125136565 125136638 -19145851 - MIR SINE MIR -3 259 176 2038 109 39 0 chr12 125137275 125137560 -19144929 + AluSx SINE Alu 4 299 -13 202 310 0 56 chr12 125138115 125138186 -19144303 - MER91 DNA MER1_type -1 189 123 447 206 29 10 chr12 125138212 125138314 -19144175 + MIR SINE MIR 102 205 -57 498 217 47 0 chr12 125138338 125138444 -19144045 + MER81 DNA DNA 4 114 0 1969 140 31 10 chr12 125138488 125138781 -19143708 - AluSx SINE Alu -13 299 1 189 186 0 23 chr12 125138961 125139004 -19143485 + L2 LINE L2 3271 3312 -1 328 301 116 0 chr12 125139099 125139245 -19143244 + MIR SINE MIR 87 249 -13 233 373 17 8 chr12 125139285 125139403 -19143086 - MIR SINE MIR -53 209 91 652 257 17 23 chr12 125140115 125140290 -19142199 - MIR SINE MIR -87 175 2 2293 119 0 0 chr12 125140373 125140675 -19141814 - AluSx SINE Alu -8 304 3 875 140 95 6 chr12 125140677 125140856 -19141633 - L1MC2 LINE L1 -13 6331 6137 1809 166 27 57 chr12 125140856 125141083 -19141406 - L1MC3 LINE L1 -188 7597 7386 1086 173 69 118 chr12 125141083 125141533 -19140956 + MSTC LTR MaLR 1 428 0 1809 166 27 57 chr12 125141533 125141709 -19140780 - L1MC3 LINE L1 -399 7386 7206 2297 94 3 19 chr12 125141709 125142017 -19140472 - AluSq SINE Alu -10 303 1 342 218 58 0 chr12 125142019 125142106 -19140383 + MER45 DNA AcHobo 1482 1573 -8 205 300 160 10 chr12 125142455 125142555 -19139934 + MIR SINE MIR 33 147 -61 1814 158 7 17 chr12 125142619 125142775 -19139714 - AluJo SINE Alu -23 289 136 2199 117 0 0 chr12 125142775 125143065 -19139424 - AluSx SINE Alu -22 290 1 1814 158 7 17 chr12 125143065 125143200 -19139289 - AluJo SINE Alu -176 136 1 240 111 0 0 chr12 125144136 125144172 -19138317 + (TG)n Simple_repeat Simple_repeat 2 37 0 336 287 0 0 chr12 125145102 125145196 -19137293 - MLT1K LTR MaLR -344 244 151 228 161 0 218 chr12 125145449 125145536 -19136953 - MER20 DNA MER1_type -151 68 1 1765 120 4 23 chr12 125145638 125145897 -19136592 + AluSq SINE Alu 59 312 -1 197 235 59 29 chr12 125146203 125146271 -19136218 - MIR SINE MIR -40 222 153 226 282 0 26 chr12 125146273 125146351 -19136138 + MIR SINE MIR 186 261 -1 186 43 0 0 chr12 125146359 125146382 -19136107 + (CTA)n Simple_repeat Simple_repeat 1 23 0 801 161 62 94 chr12 125146480 125146704 -19135785 + MER20 DNA MER1_type 1 217 -2 269 359 0 6 chr12 125147297 125147467 -19135022 + GA-rich Low_complexity Low_complexity 1 169 0 32 26 0 0 chr12 125147711 125147750 -19134739 + AT_rich Low_complexity Low_complexity 1 39 0 220 234 0 0 chr12 125147760 125147807 -19134682 + A-rich Low_complexity Low_complexity 1 47 0 439 321 101 19 chr12 125148252 125148570 -19133919 - L2 LINE L2 -1 3312 2969 2215 124 3 13 chr12 125149076 125149390 -19133099 + AluSq SINE Alu 1 311 -2 354 265 29 0 chr12 125149484 125149586 -19132903 + MIR3 SINE MIR 64 168 -40 517 307 37 21 chr12 125149660 125149849 -19132640 - MIR SINE MIR -54 208 17 2209 113 0 10 chr12 125150069 125150362 -19132127 - AluSg SINE Alu -9 301 12 2108 131 0 0 chr12 125150647 125150937 -19131552 - AluSx SINE Alu -22 290 1 180 305 85 0 chr12 125150937 125150996 -19131493 - MIR SINE MIR -93 169 106 1476 198 0 85 chr12 125151005 125151333 -19131156 + AluJb SINE Alu 1 300 -12 791 176 21 62 chr12 125151423 125151535 -19130954 - MER58A DNA MER1_type -2196 224 109 2350 89 13 20 chr12 125151535 125151839 -19130650 + AluSg SINE Alu 1 302 -8 2404 64 7 3 chr12 125151842 125152139 -19130350 + AluY SINE Alu 1 298 -13 791 176 21 62 chr12 125152139 125152215 -19130274 - MER58A DNA MER1_type -2313 107 40 3102 175 65 73 chr12 125152215 125152308 -19130181 + L1MB8 LINE L1 5446 5538 -640 2177 110 24 0 chr12 125152308 125152600 -19129889 + AluSq SINE Alu 3 301 -12 3102 175 65 73 chr12 125152600 125152617 -19129872 + L1MB8 LINE L1 5538 5554 -624 2394 94 7 0 chr12 125152617 125152924 -19129565 + AluSp SINE Alu 1 309 -4 3102 175 65 73 chr12 125152924 125153726 -19128763 + L1MB8 LINE L1 5554 6178 0 284 264 0 0 chr12 125153744 125153797 -19128692 - MER58A DNA MER1_type -170 54 2 381 260 0 19 chr12 125153818 125153922 -19128567 - MLT1K LTR MaLR -10 578 477 1446 185 232 35 chr12 125153929 125154356 -19128133 - MLT2B1 LTR ERVL -7 513 3 586 291 147 66 chr12 125154356 125154664 -19127825 - MLT1K LTR MaLR -105 483 135 2136 142 0 3 chr12 125154664 125154973 -19127516 - AluSx SINE Alu -4 308 1 586 291 147 66 chr12 125154973 125155059 -19127430 - MLT1K LTR MaLR -453 135 57 2280 121 0 0 chr12 125155603 125155901 -19126588 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr12 125155964 125155985 -19126504 + (TG)n Simple_repeat Simple_repeat 2 22 0 1077 97 110 0 chr12 125156866 125157011 -19125478 - AluSq SINE Alu -19 294 134 2324 97 0 3 chr12 125157011 125157300 -19125189 - AluSg SINE Alu -22 288 1 230 309 25 12 chr12 125157332 125157413 -19125076 + L2 LINE L2 3191 3272 0 241 200 27 93 chr12 125157448 125157523 -19124966 + L2 LINE L2 3244 3313 0 386 232 189 0 chr12 125157575 125157670 -19124819 + MER81 DNA DNA 2 114 0 265 349 68 7 chr12 125157884 125158030 -19124459 - MIR SINE MIR -41 221 67 1960 148 3 3 chr12 125158047 125158345 -19124144 + AluJo SINE Alu 1 298 -14 1729 210 50 37 chr12 125158701 125159074 -19123415 - MLT1C LTR MaLR 0 467 85 2010 119 40 59 chr12 125159074 125159445 -19123044 - THE1B LTR MaLR 0 364 1 1729 210 50 37 chr12 125159445 125159532 -19122957 - MLT1C LTR MaLR -382 85 1 224 338 13 19 chr12 125160003 125160157 -19122332 + CT-rich Low_complexity Low_complexity 2 154 0 2337 107 3 0 chr12 125160160 125160468 -19122021 - AluSp SINE Alu -2 311 3 188 252 17 92 chr12 125160480 125160551 -19121938 - L2 LINE L2 -1 3312 3237 1290 210 104 24 chr12 125160551 125160889 -19121600 - MLT1A1 LTR MaLR 0 365 1 188 252 17 92 chr12 125160889 125160910 -19121579 - L2 LINE L2 -76 3237 3228 2102 143 0 0 chr12 125160910 125161204 -19121285 + AluSx SINE Alu 1 294 -18 188 252 17 92 chr12 125161204 125161229 -19121260 - L2 LINE L2 -85 3228 3203 636 189 0 0 chr12 125161303 125161414 -19121075 - FLAM_C SINE Alu -30 113 3 2147 112 7 0 chr12 125161656 125161943 -19120546 - AluSx SINE Alu -23 289 1 1915 124 34 17 chr12 125162485 125162776 -19119713 + AluJb SINE Alu 1 296 -16 296 248 184 0 chr12 125162974 125163083 -19119406 + MLT1L LTR MaLR 154 282 -333 315 0 0 0 chr12 125163256 125163291 -19119198 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2284 92 0 0 chr12 125163293 125163577 -19118912 - AluSx SINE Alu -28 284 1 1672 163 33 53 chr12 125163584 125163885 -19118604 - AluJo SINE Alu -17 295 1 326 280 0 20 chr12 125163886 125163986 -19118503 + MLT1L LTR MaLR 516 613 -2 280 319 106 0 chr12 125164025 125164119 -19118370 + MIR SINE MIR 149 252 -10 1998 142 7 0 chr12 125164126 125164422 -19118067 - AluSq SINE Alu -15 298 1 384 275 18 9 chr12 125164487 125164596 -19117893 + MLT1I LTR MaLR 1 110 -299 2503 62 3 10 chr12 125164901 125165206 -19117283 + AluY SINE Alu 1 303 -8 2252 194 20 86 chr12 125165319 125166080 -19116409 + L1MB7 LINE L1 5445 6122 -61 2240 122 7 10 chr12 125166081 125166101 -19116388 - AluSx SINE Alu -10 302 283 240 35 0 0 chr12 125166101 125166130 -19116359 + (TTCC)n Simple_repeat Simple_repeat 2 30 0 2240 122 7 10 chr12 125166130 125166412 -19116077 - AluSx SINE Alu -29 283 1 232 277 0 72 chr12 125166547 125166630 -19115859 + L2 LINE L2 3184 3260 -12 714 254 29 0 chr12 125167302 125167475 -19115014 - MER45A DNA AcHobo 0 178 1 188 263 0 0 chr12 125167479 125167517 -19114972 - MIR SINE MIR 0 262 225 611 201 149 0 chr12 125167524 125167658 -19114831 + MIR SINE MIR 4 157 -105 297 234 91 103 chr12 125167706 125167773 -19114716 - MIR SINE MIR -41 221 155 1968 117 4 4 chr12 125167773 125168093 -19114396 - AluSx SINE Alu 0 320 1 297 234 91 103 chr12 125168093 125168199 -19114290 - MIR SINE MIR -107 155 49 2386 71 0 3 chr12 125168294 125168604 -19113885 + AluY SINE Alu 1 309 -2 1626 176 0 10 chr12 125169681 125169983 -19112506 - AluJo SINE Alu -13 299 1 2136 199 115 47 chr12 125169991 125170633 -19111856 - L1MC4 LINE L1 0 8042 7357 189 0 0 0 chr12 125170655 125170676 -19111813 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2369 71 0 0 chr12 125170686 125170997 -19111492 + AluY SINE Alu 1 311 0 1356 240 146 17 chr12 125171096 125171562 -19110927 - MLT1H1 LTR MaLR 0 555 30 311 246 98 57 chr12 125172096 125172218 -19110271 - L2 LINE L2 -17 3296 3170 1460 155 3 102 chr12 125172627 125172752 -19109737 + AluJo SINE Alu 1 137 -165 2165 107 7 0 chr12 125172752 125173050 -19109439 - AluSq SINE Alu -13 300 1 1460 155 3 102 chr12 125173050 125173259 -19109230 + AluJo SINE Alu 137 302 0 243 0 0 0 chr12 125173320 125173347 -19109142 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1021 70 0 0 chr12 125173347 125173476 -19109013 - L1PA5 LINE L1 0 6154 6026 198 71 0 0 chr12 125173956 125173984 -19108505 + (T)n Simple_repeat Simple_repeat 1 28 0 2047 109 31 0 chr12 125174040 125174209 -19108280 - AluSp SINE Alu -11 302 119 207 69 0 0 chr12 125174209 125174238 -19108251 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2047 109 31 0 chr12 125174238 125174361 -19108128 - AluSp SINE Alu -194 119 1 2244 113 0 0 chr12 125174374 125174684 -19107805 - AluSq SINE Alu -3 310 1 256 340 29 29 chr12 125174734 125174837 -19107652 - MIR SINE MIR -113 149 47 4177 81 24 0 chr12 125174900 125175441 -19107048 - MER41A LTR ERV1 0 554 1 1903 120 32 0 chr12 125175496 125175779 -19106710 - AluSx SINE Alu -16 296 5 346 240 39 19 chr12 125175793 125175897 -19106592 + MIR SINE MIR 38 143 -65 1647 130 53 11 chr12 125176711 125176996 -19105493 - AluJo SINE Alu -15 297 1 365 164 33 0 chr12 125177533 125177594 -19104895 + MER91B DNA MER1_type 1 63 -127 206 194 0 0 chr12 125177700 125177736 -19104753 + MIR SINE MIR 217 252 -10 1548 164 10 14 chr12 125177742 125178035 -19104454 + AluJo SINE Alu 1 292 -20 1761 155 7 10 chr12 125178045 125178342 -19104147 + AluSx SINE Alu 1 296 -16 363 268 132 59 chr12 125178360 125178481 -19104008 + MARNA DNA Mariner 12 123 -463 2051 104 3 14 chr12 125178481 125178778 -19103711 - AluSx SINE Alu -18 294 1 363 268 132 59 chr12 125178778 125178876 -19103613 + MARNA DNA Mariner 123 247 -339 686 62 80 44 chr12 125179339 125179452 -19103037 + L1PA11 LINE L1 6055 6171 -3 719 127 8 71 chr12 125179744 125179870 -19102619 - FLAM_C SINE Alu -10 133 16 604 227 0 0 chr12 125183432 125183542 -19098947 - FLAM_A SINE Alu -32 110 1 470 270 54 38 chr12 125184017 125184202 -19098287 + MARNA DNA Mariner 28 215 -371 22 70 0 0 chr12 125185089 125185132 -19097357 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr12 125186161 125186197 -19096292 + AT_rich Low_complexity Low_complexity 1 36 0 442 307 123 25 chr12 125186306 125186622 -19095867 - L2 LINE L2 -510 2804 2458 1967 117 20 7 chr12 125186877 125187175 -19095314 - AluSq SINE Alu -11 302 1 263 276 31 68 chr12 125189112 125189304 -19093185 - L1MC/D LINE L1 -1907 5901 5717 365 354 84 19 chr12 125189354 125189593 -19092896 - L1MC/D LINE L1 -557 5564 5308 2259 93 3 0 chr12 125189593 125189894 -19092595 - AluSx SINE Alu -10 302 1 365 354 84 19 chr12 125189894 125189920 -19092569 - L1MC/D LINE L1 -813 5308 5285 531 237 79 13 chr12 125190001 125190153 -19092336 - MIR SINE MIR -20 242 81 861 217 166 24 chr12 125190802 125191055 -19091434 - MLT1J LTR MaLR -140 371 83 2176 89 31 0 chr12 125191414 125191706 -19090783 + AluSc SINE Alu 1 301 -8 1058 208 128 49 chr12 125191773 125192139 -19090350 - L1ME1 LINE L1 -5 6161 5767 491 223 196 41 chr12 125192143 125192363 -19090126 - L1ME1 LINE L1 -459 5705 5452 1014 171 127 0 chr12 125192367 125192572 -19089917 - MER46A DNA MER2_type 0 236 6 5490 235 64 40 chr12 125192587 125193629 -19088860 - L1ME1 LINE L1 -743 5403 4387 1727 143 7 31 chr12 125193629 125193922 -19088567 - AluSx SINE Alu -26 286 1 5490 235 64 40 chr12 125193922 125194341 -19088148 - L1ME1 LINE L1 -1759 4387 3979 2068 100 7 10 chr12 125194341 125194641 -19087848 + AluSx SINE Alu 14 312 0 5490 235 64 40 chr12 125194641 125195096 -19087393 - L1ME1 LINE L1 -2167 3979 3464 2049 112 0 32 chr12 125195096 125195409 -19087080 - AluSq SINE Alu -10 303 1 5490 235 64 40 chr12 125195409 125195544 -19086945 - L1ME1 LINE L1 -2682 3464 3334 1281 206 21 35 chr12 125195692 125195967 -19086522 - Charlie4a DNA MER1_type -1601 360 89 2208 106 10 0 chr12 125195967 125196270 -19086219 + AluSx SINE Alu 1 306 -6 1281 206 21 35 chr12 125196270 125196333 -19086156 - Charlie4a DNA MER1_type -1872 89 27 378 320 66 31 chr12 125196591 125196819 -19085670 + MIR SINE MIR 9 244 -18 537 170 20 39 chr12 125197100 125197422 -19085067 + CT-rich Low_complexity Low_complexity 1 315 0 195 219 0 0 chr12 125198137 125198178 -19084311 + L2 LINE L2 3268 3308 -5 1906 123 3 3 chr12 125198202 125198487 -19084002 + AluSx SINE Alu 1 285 -27 256 156 0 0 chr12 125198681 125198726 -19083763 - L2 LINE L2 0 3313 3269 1559 170 0 42 chr12 125198908 125199220 -19083269 + AluJo SINE Alu 1 299 -13 203 355 161 0 chr12 125199291 125199415 -19083074 + MIR3 SINE MIR 58 201 -7 275 239 76 0 chr12 125199881 125199973 -19082516 - L1ME4a LINE L1 -67 6054 5956 388 319 12 24 chr12 125199999 125200168 -19082321 - L1ME4a LINE L1 -340 5781 5615 2171 108 0 3 chr12 125201366 125201662 -19080827 - AluSx SINE Alu -17 295 1 357 184 20 61 chr12 125201874 125201972 -19080517 + AluJ/FLAM SINE Alu 6 99 -203 182 37 37 0 chr12 125202455 125202482 -19080007 + (TAA)n Simple_repeat Simple_repeat 3 30 0 1500 177 44 3 chr12 125202820 125203114 -19079375 - AluSx SINE Alu -6 306 1 249 294 39 29 chr12 125203632 125203734 -19078755 + L2 LINE L2 3169 3271 -1 2172 92 0 25 chr12 125203816 125204130 -19078359 + AluSx SINE Alu 1 306 -6 273 119 0 0 chr12 125204130 125204172 -19078317 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 336 231 99 0 chr12 125204332 125204423 -19078066 - MER103 DNA DNA -64 102 3 1891 127 0 0 chr12 125204567 125204843 -19077646 + AluSx SINE Alu 1 276 -36 1477 223 59 50 chr12 125205059 125205315 -19077174 + MLT1C LTR MaLR 7 270 -197 2060 127 0 0 chr12 125205315 125205607 -19076882 + AluSx SINE Alu 1 292 -20 1477 223 59 50 chr12 125205607 125205807 -19076682 + MLT1C LTR MaLR 270 467 0 2067 117 21 0 chr12 125206418 125206708 -19075781 - AluSx SINE Alu -16 296 1 404 315 77 0 chr12 125206740 125206883 -19075606 + MIR SINE MIR 107 260 -2 517 169 60 159 chr12 125206944 125207014 -19075475 - MIR SINE MIR -21 241 166 1711 164 0 10 chr12 125207014 125207306 -19075183 - AluJo SINE Alu -23 289 1 517 169 60 159 chr12 125207306 125207436 -19075053 - MIR SINE MIR -96 166 61 285 108 0 0 chr12 125207541 125207602 -19074887 + Alu SINE Alu 244 304 0 204 269 50 67 chr12 125207964 125208058 -19074431 + MIR SINE MIR 25 118 -144 2135 114 3 25 chr12 125208058 125208375 -19074114 - AluSx SINE Alu -2 310 1 204 269 50 67 chr12 125208375 125208399 -19074090 + MIR SINE MIR 118 141 -121 186 284 135 0 chr12 125208630 125208704 -19073785 - MIR SINE MIR -3 259 176 1761 126 34 10 chr12 125209342 125209636 -19072853 + AluSx SINE Alu 4 304 -8 233 299 0 26 chr12 125209817 125209894 -19072595 + L2 LINE L2 3197 3271 -1 363 241 197 7 chr12 125210216 125210358 -19072131 - MIR SINE MIR -2 260 93 515 303 18 0 chr12 125210537 125210702 -19071787 - MLT1K LTR MaLR -1 587 420 1973 142 3 7 chr12 125210707 125211010 -19071479 + AluSx SINE Alu 5 306 -6 658 133 31 44 chr12 125211010 125211214 -19071275 + GA-rich Low_complexity Low_complexity 1 206 -325 2037 77 0 58 chr12 125211214 125211524 -19070965 + AluY SINE Alu 6 297 -14 658 133 31 44 chr12 125211524 125211548 -19070941 + GA-rich Low_complexity Low_complexity 206 531 0 291 210 30 10 chr12 125211562 125211662 -19070827 + GA-rich Low_complexity Low_complexity 3 104 0 312 48 0 0 chr12 125212153 125212195 -19070294 + (CA)n Simple_repeat Simple_repeat 1 42 0 227 259 176 9 chr12 125213096 125213204 -19069285 - MER5A DNA MER1_type -63 126 1 3195 157 18 8 chr12 125213433 125213948 -19068541 + MLT2B1 LTR ERVL 1 520 0 545 298 24 12 chr12 125214002 125214170 -19068319 + LTR16B LTR ERVL 129 298 -166 357 109 0 0 chr12 125214218 125214273 -19068216 + (TCCCC)n Simple_repeat Simple_repeat 4 58 0 1994 116 7 3 chr12 125214273 125214566 -19067923 - AluSx SINE Alu -18 294 1 227 322 25 17 chr12 125214611 125214729 -19067760 + LTR16B LTR ERVL 346 464 0 1739 167 7 0 chr12 125214790 125215090 -19067399 - AluJb SINE Alu -10 302 1 241 148 0 37 chr12 125215357 125215411 -19067078 + (TTAA)n Simple_repeat Simple_repeat 3 54 0 2204 102 7 0 chr12 125215424 125215729 -19066760 - AluSx SINE Alu -5 307 1 371 354 108 0 chr12 125216555 125216713 -19065776 + L2 LINE L2 3092 3266 -6 225 139 0 0 chr12 125217506 125217549 -19064940 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 278 184 0 17 chr12 125218926 125218993 -19063496 - MLT1J LTR MaLR -333 178 137 281 259 82 12 chr12 125219014 125219099 -19063390 - MLT1L LTR MaLR -518 97 7 326 311 28 9 chr12 125219306 125219412 -19063077 - MIR SINE MIR -42 220 113 381 327 63 72 chr12 125219578 125219758 -19062731 + L2 LINE L2 2943 3123 -149 2389 60 3 13 chr12 125219758 125220072 -19062417 - AluY SINE Alu 0 311 1 381 327 63 72 chr12 125220072 125220091 -19062398 + L2 LINE L2 3123 3141 -131 1950 105 25 0 chr12 125220091 125220367 -19062122 - AluSx SINE Alu -29 283 1 381 327 63 72 chr12 125220367 125220499 -19061990 + L2 LINE L2 3141 3272 0 24 32 0 0 chr12 125220585 125220616 -19061873 + AT_rich Low_complexity Low_complexity 1 31 0 776 199 0 31 chr12 125220620 125220781 -19061708 - FRAM SINE Alu -10 156 1 287 232 32 63 chr12 125220956 125221051 -19061438 - MIR SINE MIR -7 255 164 1674 152 10 45 chr12 125221181 125221302 -19061187 + AluJo SINE Alu 1 125 -187 2125 118 0 3 chr12 125221302 125221608 -19060881 - AluSx SINE Alu -7 305 1 1674 152 10 45 chr12 125221608 125221795 -19060694 + AluJo SINE Alu 125 298 -14 511 233 0 0 chr12 125222520 125222636 -19059853 - MER58 DNA MER1_type -175 166 51 650 198 33 0 chr12 125222647 125222768 -19059721 + FLAM_C SINE Alu 2 126 -17 1558 181 7 7 chr12 125222779 125223066 -19059423 + AluJb SINE Alu 1 287 -25 271 217 0 0 chr12 125223097 125223157 -19059332 + MER58 DNA MER1_type 127 186 -2234 334 163 38 12 chr12 125223157 125223237 -19059252 - L1MB7 LINE L1 -10 6174 6093 1813 153 15 15 chr12 125223237 125223566 -19058923 - MER96B DNA MER1_type? -56 361 33 824 274 67 21 chr12 125223707 125224080 -19058409 - L1ME4a LINE L1 -3 6118 5729 453 177 81 65 chr12 125224382 125224506 -19057983 - MER58C DNA MER1_type -85 130 5 281 326 116 43 chr12 125224538 125224771 -19057718 - L1ME4a LINE L1 -411 5710 5461 2016 125 7 3 chr12 125226941 125227244 -19055245 + AluSx SINE Alu 1 304 -8 1752 174 3 0 chr12 125227254 125227547 -19054942 + AluJo SINE Alu 1 294 -18 412 341 14 0 chr12 125227548 125227686 -19054803 + L2 LINE L2 2910 3049 -264 933 225 67 53 chr12 125227757 125228039 -19054450 - MLT1I LTR MaLR 0 549 140 1718 156 29 4 chr12 125228039 125228344 -19054145 + AluSg SINE Alu 1 312 0 933 225 67 53 chr12 125228344 125228486 -19054003 - MLT1I LTR MaLR -409 140 1 392 183 56 63 chr12 125228494 125228620 -19053869 - MLT1L LTR MaLR -10 605 481 258 186 114 29 chr12 125228806 125228876 -19053613 - MLT1J LTR MaLR -325 186 111 237 316 13 13 chr12 125228818 125228894 -19053595 - LTR67 LTR ERVL -385 172 97 * 238 208 0 21 chr12 125229260 125229308 -19053181 + LTR67 LTR ERVL 511 557 0 1766 149 151 44 chr12 125229313 125229365 -19053124 + MSTB1 LTR MaLR 1 46 -386 2198 99 0 3 chr12 125229365 125229667 -19052822 + AluY SINE Alu 2 302 -9 2374 77 3 3 chr12 125229669 125229980 -19052509 + AluSp SINE Alu 3 313 0 1766 149 151 44 chr12 125229980 125230314 -19052175 + MSTB1 LTR MaLR 46 432 0 319 302 102 63 chr12 125230315 125230371 -19052118 + L2 LINE L2 3046 3098 -215 1759 157 3 7 chr12 125230371 125230664 -19051825 - AluSx SINE Alu -20 292 1 319 302 102 63 chr12 125230664 125230862 -19051627 + L2 LINE L2 3098 3310 -3 1720 144 19 19 chr12 125231759 125232071 -19050418 + AluJo SINE Alu 1 312 0 2135 112 13 0 chr12 125232346 125232649 -19049840 + AluSx SINE Alu 1 307 -5 658 245 83 26 chr12 125232674 125232866 -19049623 - MLT1K LTR MaLR -147 441 239 483 215 99 8 chr12 125232915 125233036 -19049453 - MIR SINE MIR -70 192 61 490 160 30 50 chr12 125233175 125233275 -19049214 - MIR SINE MIR -100 162 65 1893 125 0 0 chr12 125233281 125233560 -19048929 + AluSx SINE Alu 1 279 -33 225 0 0 0 chr12 125233562 125233587 -19048902 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 234 217 17 50 chr12 125233947 125234007 -19048482 - L2 LINE L2 -2 3311 3254 1813 129 0 30 chr12 125234131 125234426 -19048063 + AluJb SINE Alu 1 286 -26 2161 97 0 7 chr12 125234727 125235026 -19047463 - AluY SINE Alu -14 297 1 682 202 8 0 chr12 125235348 125235472 -19047017 + FLAM_A SINE Alu 2 126 -7 216 158 0 0 chr12 125235473 125235511 -19046978 + GA-rich Low_complexity Low_complexity 1 38 0 403 259 81 29 chr12 125235521 125235695 -19046794 + L1ME4a LINE L1 5539 5721 -400 2213 90 0 0 chr12 125235698 125235986 -19046503 + AluSg SINE Alu 1 288 -22 312 206 15 15 chr12 125235987 125236055 -19046434 + L1MC4 LINE L1 6636 6703 -1339 1788 128 14 4 chr12 125236083 125236384 -19046105 + AluSx SINE Alu 1 304 0 511 221 30 8 chr12 125236392 125236523 -19045966 + L1ME4a LINE L1 5724 5857 -264 2220 84 0 3 chr12 125236544 125236843 -19045646 + AluSg1 SINE Alu 1 298 -11 257 313 163 34 chr12 125236928 125237075 -19045414 + MIR SINE MIR 6 171 -91 387 60 0 0 chr12 125237126 125237176 -19045313 + (TG)n Simple_repeat Simple_repeat 2 51 0 1502 268 104 52 chr12 125237688 125238244 -19044245 + MLT1K LTR MaLR 4 588 0 2138 103 0 13 chr12 125238460 125238772 -19043717 + AluSx SINE Alu 1 308 -4 827 237 21 16 chr12 125239355 125239545 -19042944 + MIR SINE MIR 39 229 -33 2338 70 70 190 chr12 125239671 125240186 -19042303 + MLT2A2 LTR ERVL 1 453 0 1843 121 50 3 chr12 125240636 125240934 -19041555 - AluSx SINE Alu 0 312 1 339 325 9 75 chr12 125241038 125241250 -19041239 + MIR SINE MIR 13 210 -52 858 136 7 0 chr12 125241256 125241396 -19041093 + FLAM_C SINE Alu 1 141 -2 2217 70 0 11 chr12 125241401 125241688 -19040801 + AluY SINE Alu 1 284 -27 2044 119 7 0 chr12 125241721 125242024 -19040465 + AluSp SINE Alu 1 305 -8 5962 104 12 25 chr12 125242436 125244062 -19038427 - L1PA15 LINE L1 -4 6161 4561 2238 79 3 10 chr12 125244062 125244365 -19038124 - AluY SINE Alu -10 301 1 5962 104 12 25 chr12 125244365 125244642 -19037847 - L1PA15 LINE L1 -1604 4561 4282 281 236 56 0 chr12 125244813 125244885 -19037604 + MIR SINE MIR 117 192 -70 1963 137 0 0 chr12 125245049 125245333 -19037156 + AluSx SINE Alu 1 284 -28 288 0 0 0 chr12 125245333 125245365 -19037124 + (CA)n Simple_repeat Simple_repeat 2 33 0 1008 217 33 5 chr12 125245583 125245795 -19036694 + MER20 DNA MER1_type 2 219 0 319 250 12 12 chr12 125245856 125245936 -19036553 + MIR SINE MIR 172 251 -11 1757 155 3 19 chr12 125246167 125246483 -19036006 - AluJo SINE Alu -1 311 1 25 31 0 0 chr12 125246926 125246958 -19035531 + AT_rich Low_complexity Low_complexity 1 32 0 278 244 58 83 chr12 125247494 125247650 -19034839 - MER117 DNA MER1_type 0 197 46 1917 149 0 19 chr12 125247950 125248258 -19034231 - AluJb SINE Alu -8 304 3 200 61 61 0 chr12 125248903 125248936 -19033553 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 326 310 0 0 chr12 125248936 125249023 -19033466 - L2 LINE L2 0 3272 3186 1100 139 31 16 chr12 125249092 125249286 -19033203 + MER20 DNA MER1_type 3 199 -20 1670 153 3 49 chr12 125249300 125249627 -19032862 + AluJo SINE Alu 1 312 0 525 208 101 27 chr12 125249633 125249782 -19032707 + MER105 DNA DNA 44 203 -1 464 100 0 14 chr12 125249787 125249857 -19032632 + MER5A DNA MER1_type 3 71 -118 2095 110 7 0 chr12 125249860 125250152 -19032337 + AluSx SINE Alu 1 294 -18 527 297 99 22 chr12 125253269 125253478 -19029011 - MIR SINE MIR -1 261 31 2093 117 7 0 chr12 125253478 125253778 -19028711 + AluSx SINE Alu 1 302 -10 527 297 99 22 chr12 125253778 125253800 -19028689 - MIR SINE MIR -231 31 12 1045 234 172 34 chr12 125253930 125254289 -19028200 - MLT1D LTR MaLR 0 505 72 1696 192 0 0 chr12 125254289 125254597 -19027892 - AluJb SINE Alu -4 308 1 1045 234 172 34 chr12 125254597 125254678 -19027811 - MLT1D LTR MaLR -433 72 4 448 292 88 46 chr12 125254817 125255057 -19027432 - MIR SINE MIR -6 256 7 318 87 0 0 chr12 125255279 125255325 -19027164 + (TC)n Simple_repeat Simple_repeat 1 46 0 183 129 0 0 chr12 125255881 125255912 -19026577 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 268 316 240 6 chr12 125256012 125256183 -19026306 - L2 LINE L2 -89 3183 2973 2000 138 0 0 chr12 125256193 125256490 -19025999 - AluSx SINE Alu -15 297 1 638 150 56 62 chr12 125257010 125257170 -19025319 - L1ME2 LINE L1 0 6164 6006 774 205 106 0 chr12 125257365 125257526 -19024963 + MER45A DNA AcHobo 1 178 0 429 130 39 0 chr12 125258450 125258527 -19023962 + MADE1 DNA Mariner 1 80 0 201 297 14 0 chr12 125258814 125258888 -19023601 - MIR SINE MIR -15 247 173 * 1190 246 183 9 chr12 125258882 125259361 -19023128 + L2 LINE L2 2500 3068 -245 965 143 7 0 chr12 125259373 125259527 -19022962 + AluJb SINE Alu 1 155 -157 1046 159 24 19 chr12 125259598 125259806 -19022683 + AluJo SINE Alu 97 305 -7 186 43 0 0 chr12 125259957 125259980 -19022509 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 362 261 75 62 chr12 125259980 125260141 -19022348 - MIR SINE MIR -92 170 8 1945 160 0 0 chr12 125260358 125260665 -19021824 - AluJb SINE Alu -5 307 1 2930 193 8 8 chr12 125260969 125261554 -19020935 + L1MB5 LINE L1 5590 6174 0 621 323 80 24 chr12 125262090 125262396 -19020093 - L1MC4a LINE L1 -344 5822 5591 364 356 6 6 chr12 125262986 125263146 -19019343 - MLT1L LTR MaLR -11 604 445 579 260 47 12 chr12 125263146 125263315 -19019174 + MIR SINE MIR 10 184 -78 1082 148 72 10 chr12 125263322 125263531 -19018958 - AluJo SINE Alu -82 230 9 192 279 0 49 chr12 125263630 125263691 -19018798 + MIR SINE MIR 205 262 0 1997 124 0 7 chr12 125263869 125264159 -19018330 + AluSx SINE Alu 1 288 -24 342 0 0 0 chr12 125264163 125264201 -19018288 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 417 207 89 71 chr12 125264277 125264446 -19018043 - MLT1L LTR MaLR -385 230 59 714 194 16 16 chr12 125264473 125264602 -19017887 - AluJb SINE Alu -35 277 149 183 322 267 7 chr12 125264926 125265072 -19017417 - MIR SINE MIR -71 191 8 1844 139 4 0 chr12 125265201 125265502 -19016987 + AluSx SINE Alu 1 302 0 794 167 0 0 chr12 125265510 125265642 -19016847 + FLAM_C SINE Alu 2 133 0 2268 110 0 0 chr12 125265648 125265957 -19016532 + AluSx SINE Alu 1 309 -3 327 203 114 41 chr12 125265957 125266080 -19016409 + L1ME4a LINE L1 5989 6120 -1 362 211 48 58 chr12 125266310 125266414 -19016075 + MIR SINE MIR 73 175 -87 264 282 14 0 chr12 125266496 125266567 -19015922 - L2 LINE L2 -57 3256 3185 813 260 89 36 chr12 125266571 125266875 -19015614 - L2 LINE L2 -337 2977 2658 245 307 58 83 chr12 125267344 125267549 -19014940 + L2 LINE L2 2971 3170 -102 947 194 24 29 chr12 125267553 125267759 -19014730 - MER3 DNA MER1_type -4 205 1 373 229 183 43 chr12 125267825 125267981 -19014508 + MIR SINE MIR 33 233 -29 1516 167 52 14 chr12 125267981 125268269 -19014220 + AluJo SINE Alu 1 299 -13 373 229 183 43 chr12 125268269 125268304 -19014185 + MIR SINE MIR 233 262 0 474 250 118 59 chr12 125268464 125268684 -19013805 - MIR SINE MIR 0 262 30 577 253 55 63 chr12 125269850 125270087 -19012402 - MIR SINE MIR -13 249 15 1918 137 0 0 chr12 125270229 125270543 -19011946 + AluSx SINE Alu 1 314 0 312 91 0 0 chr12 125270734 125270778 -19011711 + (TG)n Simple_repeat Simple_repeat 1 44 0 1424 259 77 19 chr12 125271937 125272416 -19010073 + LTR33 LTR ERVL 15 521 0 418 261 127 30 chr12 125272420 125272554 -19009935 - MIR SINE MIR -111 151 5 666 266 34 14 chr12 125272560 125272756 -19009733 - MIR SINE MIR 0 262 60 1916 148 0 16 chr12 125272756 125273059 -19009430 + AluJb SINE Alu 1 298 -14 1082 215 135 19 chr12 125273415 125273778 -19008711 - L1ME1 LINE L1 -4 6162 5758 515 70 20 40 chr12 125273795 125273895 -19008594 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 374 218 29 49 chr12 125273955 125274109 -19008380 + L1MC/D LINE L1 5691 5841 -297 1225 152 46 130 chr12 125274361 125274684 -19007805 - AluJo SINE Alu -6 296 1 201 74 0 0 chr12 125274901 125274928 -19007561 + (CA)n Simple_repeat Simple_repeat 1 27 0 890 109 53 0 chr12 125275794 125276061 -19006428 + (TCCA)n Simple_repeat Simple_repeat 1 281 0 182 65 65 22 chr12 125276073 125276119 -19006370 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 460 326 97 15 chr12 125278537 125278804 -19003685 + L1ME4a LINE L1 5512 5800 -321 455 252 116 41 chr12 125278889 125278900 -19003589 - L2 LINE L2 -3 3310 3301 1511 139 42 103 chr12 125278900 125279231 -19003258 - AluSx SINE Alu -1 311 1 455 252 116 41 chr12 125279231 125279366 -19003123 - L2 LINE L2 -12 3301 3153 2310 180 32 121 chr12 125279421 125279544 -19002945 + L1ME1 LINE L1 5561 5693 -473 2307 90 3 0 chr12 125279544 125279845 -19002644 + AluSg SINE Alu 1 302 -8 2310 180 32 121 chr12 125279845 125280381 -19002108 + L1ME1 LINE L1 5693 6161 -5 254 233 100 72 chr12 125280376 125280625 -19001864 + L1ME4a LINE L1 5866 6121 0 * 220 178 22 22 chr12 125281028 125281073 -19001416 - MIR SINE MIR -1 261 217 497 196 78 106 chr12 125281108 125281287 -19001202 - L2 LINE L2 0 3313 3140 2050 102 0 7 chr12 125281316 125281631 -19000858 - AluY SINE Alu 0 313 1 2193 92 3 0 chr12 125281633 125281926 -19000563 - AluSx SINE Alu -18 294 1 878 169 0 7 chr12 125281931 125282085 -19000404 - AluJb SINE Alu -15 297 145 22 0 0 0 chr12 125282109 125282131 -19000358 + AT_rich Low_complexity Low_complexity 1 22 0 831 124 0 0 chr12 125282162 125282283 -19000206 - FLAM_C SINE Alu -10 133 13 627 296 141 19 chr12 125282283 125282767 -18999722 - L2 LINE L2 -166 3147 2570 537 266 13 32 chr12 125282784 125282938 -18999551 + MIR SINE MIR 112 262 0 462 256 17 0 chr12 125283229 125283346 -18999143 + MIR SINE MIR 72 190 -72 1689 116 0 0 chr12 125284200 125284442 -18998047 + AluSg/x SINE Alu 69 310 0 277 208 0 7 chr12 125284456 125284505 -18997984 + AluSg/x SINE Alu 142 178 -122 1520 168 58 14 chr12 125284505 125284796 -18997693 + AluJo SINE Alu 6 309 -3 277 208 0 7 chr12 125284796 125284809 -18997680 + AluSg/x SINE Alu 178 190 -110 216 267 60 35 chr12 125284846 125284962 -18997527 - L2 LINE L2 -618 2696 2578 293 328 102 0 chr12 125285149 125285277 -18997212 + MIR SINE MIR 41 181 -81 201 224 0 60 chr12 125286026 125286093 -18996396 + G-rich Low_complexity Low_complexity 3 65 0 188 67 33 0 chr12 125286286 125286316 -18996173 + (TCC)n Simple_repeat Simple_repeat 1 31 0 210 222 0 63 chr12 125286623 125286686 -18995803 + C-rich Low_complexity Low_complexity 1 59 0 269 306 204 19 chr12 125287181 125287289 -18995200 + MIR SINE MIR 25 152 -110 225 0 0 0 chr12 125287567 125287592 -18994897 + (A)n Simple_repeat Simple_repeat 1 25 0 267 293 60 60 chr12 125287601 125287751 -18994738 + MIR SINE MIR 57 206 -56 216 0 0 0 chr12 125287751 125287775 -18994714 + (A)n Simple_repeat Simple_repeat 1 24 0 2271 100 0 0 chr12 125287983 125288284 -18994205 - AluSx SINE Alu -11 301 1 506 271 12 53 chr12 125288298 125288468 -18994021 + L2 LINE L2 3151 3313 0 1845 120 27 20 chr12 125288982 125289281 -18993208 - AluSx SINE Alu -9 303 3 1097 283 163 14 chr12 125290432 125290917 -18991572 - MLT1K LTR MaLR 0 588 32 674 271 84 19 chr12 125291862 125292076 -18990413 - MIR SINE MIR -4 258 31 402 195 0 0 chr12 125292683 125292765 -18989724 + MER113 DNA MER1_type? 30 111 -410 316 83 50 33 chr12 125292782 125292842 -18989647 - L1MB5 LINE L1 0 6174 6114 2261 166 26 14 chr12 125292879 125293294 -18989195 - L1MB5 LINE L1 -46 6128 5709 180 0 0 0 chr12 125293300 125293320 -18989169 + (TTTAG)n Simple_repeat Simple_repeat 3 22 0 681 167 0 0 chr12 125293320 125293422 -18989067 - AluSg/x SINE Alu -28 284 183 843 86 0 0 chr12 125293524 125293641 -18988848 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 235 298 131 0 chr12 125293862 125293946 -18988543 + MIR SINE MIR 15 109 -153 228 152 0 0 chr12 125293936 125293969 -18988520 + MIR SINE MIR 219 251 -11 * 1307 216 61 51 chr12 125294068 125294526 -18987963 - MLT1C LTR MaLR 0 467 1 716 161 81 112 chr12 125295519 125295648 -18986841 - MLT1B LTR MaLR -201 266 166 2005 116 20 3 chr12 125295648 125295950 -18986539 + AluSq SINE Alu 1 307 -6 716 161 81 112 chr12 125295950 125296095 -18986394 - MLT1B LTR MaLR -301 166 18 180 179 0 0 chr12 125296303 125296342 -18986147 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 351 253 45 71 chr12 125296356 125296510 -18985979 + L2 LINE L2 3152 3301 -12 244 298 79 13 chr12 125297231 125297385 -18985104 + MIR SINE MIR 30 192 -70 200 33 0 33 chr12 125297532 125297562 -18984927 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 315 254 273 9 chr12 125297749 125297859 -18984630 + L2 LINE L2 3134 3272 0 403 216 17 0 chr12 125297859 125297975 -18984514 + (TGGA)n Simple_repeat Simple_repeat 2 119 0 747 168 6 17 chr12 125297997 125298176 -18984313 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 1595 183 35 29 chr12 125298271 125298639 -18983850 - MLT1C LTR MaLR -117 388 1 249 395 58 12 chr12 125298641 125298899 -18983590 + L1ME LINE L1 5616 5885 -285 394 324 90 40 chr12 125299600 125299946 -18982543 - Charlie8 DNA MER1_type -1958 459 97 1696 187 6 24 chr12 125299966 125300297 -18982192 + L1MB5 LINE L1 5430 5754 -420 1700 179 10 3 chr12 125300299 125300607 -18981882 + L1MB5 LINE L1 5833 6142 -32 2202 119 0 0 chr12 125300608 125300919 -18981570 + AluSx SINE Alu 2 312 0 780 134 22 37 chr12 125300944 125301078 -18981411 + FLAM_C SINE Alu 2 133 0 256 125 0 0 chr12 125301088 125301136 -18981353 + L1MB5 LINE L1 6127 6174 0 234 258 100 92 chr12 125301302 125301422 -18981067 - MIR SINE MIR -67 141 21 2149 118 0 10 chr12 125301526 125301839 -18980650 + AluSx SINE Alu 1 310 -2 1144 202 9 14 chr12 125302355 125302573 -18979916 - MER20 DNA MER1_type -1 218 2 4189 57 43 0 chr12 125302704 125303235 -18979254 - MER41A LTR ERV1 0 554 1 334 287 11 0 chr12 125303372 125303459 -18979030 - MIR SINE MIR -126 136 49 1246 297 48 28 chr12 125303691 125304189 -18978300 - MLT1K LTR MaLR -1 587 80 1950 143 0 0 chr12 125304430 125304716 -18977773 - AluSx SINE Alu -24 288 3 1639 119 105 7 chr12 125304813 125305090 -18977399 - AluJo SINE Alu -5 307 4 326 137 39 227 chr12 125305191 125305385 -18977104 - MIR SINE MIR -67 141 30 630 39 0 0 chr12 125306843 125306920 -18975569 + (TA)n Simple_repeat Simple_repeat 2 78 0 2068 97 7 0 chr12 125306922 125307201 -18975288 - AluSx SINE Alu -31 281 1 601 171 67 116 chr12 125307262 125307455 -18975034 + MLT1K LTR MaLR 27 210 -257 315 226 0 71 chr12 125307432 125307516 -18974973 + AluJo SINE Alu 85 162 -140 * 1236 168 0 0 chr12 125307616 125307812 -18974677 + AluSg/x SINE Alu 94 289 -21 1115 138 0 0 chr12 125307818 125307978 -18974511 + AluJo SINE Alu 140 299 -3 732 221 27 0 chr12 125308370 125308519 -18973970 + MIR SINE MIR 56 208 -54 1073 263 103 11 chr12 125308725 125309075 -18973414 + MLT1K LTR MaLR 207 588 0 306 185 141 11 chr12 125309100 125309192 -18973297 - MIR SINE MIR -97 165 62 184 338 27 0 chr12 125309235 125309309 -18973180 + MIR SINE MIR 78 153 -55 3707 292 43 39 chr12 125309514 125309643 -18972846 - L1MEc LINE L1 -4545 1851 1724 1991 108 14 4 chr12 125309643 125309943 -18972546 - AluSp SINE Alu 0 305 3 3707 292 43 39 chr12 125309943 125310602 -18971887 - L1MEc LINE L1 -4672 1724 1069 792 188 0 0 chr12 125310602 125310730 -18971759 - FLAM_A SINE Alu -5 128 1 3707 292 43 39 chr12 125310730 125311746 -18970743 - L1MEc LINE L1 -5327 1069 38 2220 108 13 53 chr12 125311889 125312268 -18970221 - THE1B LTR MaLR 0 364 1 291 276 35 0 chr12 125312453 125312540 -18969949 - MLT1K LTR MaLR -489 99 10 200 238 0 0 chr12 125313236 125313278 -18969211 - MIR SINE MIR -108 154 113 207 0 0 0 chr12 125313303 125313326 -18969163 + (A)n Simple_repeat Simple_repeat 1 23 0 2155 119 3 0 chr12 125313336 125313647 -18968842 + AluSx SINE Alu 1 312 0 240 218 0 18 chr12 125313729 125313784 -18968705 + GA-rich Low_complexity Low_complexity 1 54 0 1502 174 4 0 chr12 125314170 125314445 -18968044 + AluSx SINE Alu 37 312 0 263 194 0 45 chr12 125314512 125314579 -18967910 + GA-rich Low_complexity Low_complexity 3 66 0 2113 120 0 0 chr12 125314950 125315251 -18967238 + AluSx SINE Alu 1 301 -11 368 291 0 12 chr12 125315433 125315519 -18966970 + L2 LINE L2 3188 3272 0 316 255 113 19 chr12 125315921 125316027 -18966462 - MLT1G1 LTR MaLR -46 549 434 1155 157 173 96 chr12 125316033 125316340 -18966149 + MSTC LTR MaLR 5 350 -78 2171 85 16 10 chr12 125316340 125316646 -18965843 - AluY SINE Alu -3 308 1 1155 157 173 96 chr12 125316646 125316732 -18965757 + MSTC LTR MaLR 350 428 0 234 402 39 16 chr12 125316960 125317087 -18965402 + L2 LINE L2 3134 3263 -9 205 213 67 13 chr12 125317181 125317256 -18965233 + A-rich Low_complexity Low_complexity 3 81 0 2066 100 0 0 chr12 125317258 125317563 -18964926 + AluSc SINE Alu 1 305 0 2175 126 69 20 chr12 125317672 125317920 -18964569 + MER47A DNA MER2_type 1 272 -2051 2038 117 90 32 chr12 125317920 125318263 -18964226 + THE1B LTR MaLR 1 363 -1 2175 126 69 20 chr12 125318263 125318363 -18964126 + MER47A DNA MER2_type 272 366 0 435 204 56 19 chr12 125318695 125318803 -18963686 - MER103 DNA DNA -2 164 53 2505 58 0 3 chr12 125318953 125319265 -18963224 - AluY SINE Alu 0 311 1 2336 71 0 0 chr12 125319851 125320148 -18962341 - AluY SINE Alu -14 297 1 1616 163 23 17 chr12 125320407 125320708 -18961781 - AluSx SINE Alu -9 303 1 930 273 69 50 chr12 125320942 125320992 -18961497 + L1ME LINE L1 5221 5269 -893 1989 117 40 0 chr12 125320992 125321292 -18961197 - AluSx SINE Alu 0 312 1 930 273 69 50 chr12 125321292 125321835 -18960654 + L1ME LINE L1 5269 5818 -344 1731 153 3 17 chr12 125321857 125322151 -18960338 + AluJo SINE Alu 14 303 -9 873 97 0 0 chr12 125322206 125322320 -18960169 - AluSq/x SINE Alu -178 134 21 1876 99 84 0 chr12 125322408 125322681 -18959808 + AluSp SINE Alu 4 299 -14 25 31 0 0 chr12 125322687 125322719 -18959770 + AT_rich Low_complexity Low_complexity 1 32 0 491 244 0 47 chr12 125323207 125323334 -18959155 - MER58A DNA MER1_type 0 224 104 553 241 17 0 chr12 125324087 125324203 -18958286 - MER58A DNA MER1_type 0 118 1 1973 135 0 0 chr12 125324247 125324562 -18957927 + AluSq SINE Alu 1 313 0 1355 240 86 114 chr12 125324597 125325652 -18956837 - L1ME3A LINE L1 -37 6133 5114 618 131 41 7 chr12 125325652 125325797 -18956692 + CT-rich Low_complexity Low_complexity 1 150 0 287 159 0 0 chr12 125325797 125325841 -18956648 + polypyrimidine Low_complexity Low_complexity 2 45 0 1592 153 0 28 chr12 125325842 125326129 -18956360 - AluJb SINE Alu -33 279 1 2085 127 7 0 chr12 125326160 125326468 -18956021 - AluSx SINE Alu -2 310 1 914 266 61 63 chr12 125326638 125326888 -18955601 + MLT1H1 LTR MaLR 35 284 -271 1937 124 37 0 chr12 125326888 125327187 -18955302 + AluSx SINE Alu 1 310 -2 914 266 61 63 chr12 125327187 125327447 -18955042 + MLT1H1 LTR MaLR 284 497 -58 1858 136 4 0 chr12 125327447 125327757 -18954732 + AluSx SINE Alu 1 311 0 914 266 61 63 chr12 125327757 125327816 -18954673 + MLT1H1 LTR MaLR 497 555 0 2036 139 98 9 chr12 125328440 125328777 -18953712 + MSTB LTR MaLR 1 367 -59 572 110 0 0 chr12 125328777 125328884 -18953605 + AluSg/x SINE Alu 214 320 0 229 0 0 0 chr12 125328884 125328910 -18953579 + MSTB LTR MaLR 376 401 -27 1659 153 4 8 chr12 125328946 125329214 -18953275 - AluJb SINE Alu -45 267 1 472 215 33 41 chr12 125329214 125329335 -18953154 - MLT1C LTR MaLR -228 239 120 272 280 44 104 chr12 125329373 125329555 -18952934 + L2 LINE L2 3128 3298 -15 180 111 0 0 chr12 125329557 125329584 -18952905 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2091 120 3 0 chr12 125329649 125329950 -18952539 - AluSx SINE Alu -10 302 1 223 333 13 13 chr12 125330013 125330091 -18952398 - MIR SINE MIR -150 112 35 818 201 0 0 chr12 125330109 125330258 -18952231 - AluJo SINE Alu -162 150 2 301 330 10 29 chr12 125331203 125331306 -18951183 - L2 LINE L2 -5 3308 3208 1288 213 3 67 chr12 125331460 125331775 -18950714 - AluJb SINE Alu -17 295 1 2173 156 88 13 chr12 125331842 125332240 -18950249 + MSTA LTR MaLR 1 428 0 2099 204 61 53 chr12 125332293 125332817 -18949672 + MLT1F LTR MaLR 7 534 -8 2061 112 0 40 chr12 125333358 125333681 -18948808 + AluSg SINE Alu 1 310 0 485 246 35 0 chr12 125333773 125333887 -18948602 + MIR SINE MIR 52 169 -93 669 175 11 6 chr12 125334840 125335017 -18947472 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 212 167 0 19 chr12 125335123 125335177 -18947312 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 289 295 148 34 chr12 125335239 125335388 -18947101 - L2 LINE L2 -34 3238 3073 718 272 191 22 chr12 125335549 125335906 -18946583 + MLT1K LTR MaLR 63 479 -109 614 75 0 11 chr12 125336056 125336150 -18946339 + (TGGA)n Simple_repeat Simple_repeat 1 93 0 504 287 0 0 chr12 125336248 125336363 -18946126 + MIR3 SINE MIR 46 160 -48 1879 171 39 78 chr12 125336426 125336653 -18945836 + MLT1C LTR MaLR 3 203 -264 1930 133 7 3 chr12 125336653 125336961 -18945528 + AluJo SINE Alu 1 309 -3 1879 171 39 78 chr12 125336961 125337217 -18945272 + MLT1C LTR MaLR 203 467 0 557 187 57 0 chr12 125337236 125337359 -18945130 - MER103 DNA DNA -26 140 11 2179 84 0 7 chr12 125337485 125337803 -18944686 - AluSx SINE Alu 0 320 5 1018 169 34 6 chr12 125338120 125338297 -18944192 - MER20 DNA MER1_type -37 182 1 429 269 56 76 chr12 125338301 125338432 -18944057 - L1MC4a LINE L1 -1976 5832 5705 2314 64 0 7 chr12 125338432 125338729 -18943760 - AluY SINE Alu -15 296 2 429 269 56 76 chr12 125338729 125338794 -18943695 - L1MC4a LINE L1 -2103 5705 5640 1609 152 88 0 chr12 125338861 125338979 -18943510 + AluSx SINE Alu 1 107 -205 207 69 0 0 chr12 125338979 125339008 -18943481 + (TAA)n Simple_repeat Simple_repeat 1 29 0 1609 152 88 0 chr12 125339008 125339172 -18943317 + AluSx SINE Alu 107 308 -4 701 237 82 58 chr12 125339179 125339436 -18943053 + MLT1K LTR MaLR 317 579 -9 189 267 217 0 chr12 125339578 125339638 -18942851 + L2 LINE L2 3241 3313 0 1520 173 30 10 chr12 125340204 125340499 -18941990 + AluJo SINE Alu 1 301 -11 1620 166 0 42 chr12 125340501 125340637 -18941852 + AluJo SINE Alu 1 141 -171 2111 110 3 3 chr12 125340637 125340946 -18941543 + AluSc SINE Alu 1 309 0 1620 166 0 42 chr12 125340946 125341122 -18941367 + AluJo SINE Alu 141 300 -12 405 288 147 27 chr12 125341174 125341281 -18941208 - L2 LINE L2 -25 3288 3195 2316 91 0 0 chr12 125341281 125341589 -18940900 - AluY SINE Alu -3 308 1 405 288 147 27 chr12 125341589 125341665 -18940824 - L2 LINE L2 -118 3195 3083 196 311 156 8 chr12 125341682 125341804 -18940685 - MIR SINE MIR -57 205 66 2656 195 11 13 chr12 125341842 125342366 -18940123 - MER74A LTR ERVL -35 523 1 207 276 0 115 chr12 125343043 125343130 -18939359 + L2 LINE L2 3237 3313 0 732 138 0 0 chr12 125343137 125343267 -18939222 + (TGGA)n Simple_repeat Simple_repeat 1 130 0 884 155 0 6 chr12 125343313 125343494 -18938995 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 786 248 93 26 chr12 125343849 125344206 -18938283 + L1ME4a LINE L1 5348 5728 -393 202 189 0 0 chr12 125344260 125344297 -18938192 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 288 208 0 0 chr12 125344297 125344350 -18938139 - L2 LINE L2 0 3313 3261 348 259 14 109 chr12 125344366 125344452 -18938037 + L1ME4a LINE L1 5762 5830 -291 1984 154 0 0 chr12 125344452 125344764 -18937725 - AluSx SINE Alu 0 312 1 348 259 14 109 chr12 125344764 125344824 -18937665 + L1ME4a LINE L1 5830 5894 -227 1825 119 0 4 chr12 125344858 125345127 -18937362 + AluSx SINE Alu 30 297 -15 303 175 63 16 chr12 125345304 125345367 -18937122 + L1ME4a LINE L1 6055 6120 -1 194 250 0 45 chr12 125345446 125345490 -18936999 - L2 LINE L2 -31 3241 3200 287 277 271 0 chr12 125345825 125346013 -18936476 + MER102a DNA MER1_type 92 330 0 258 271 53 45 chr12 125346031 125346164 -18936325 - MIR SINE MIR -119 143 10 350 336 0 17 chr12 125346457 125346573 -18935916 - MIR SINE MIR -80 182 69 1759 101 19 12 chr12 125347861 125348118 -18934371 + AluSx SINE Alu 32 290 -22 362 272 178 30 chr12 125348166 125348368 -18934121 + MIR SINE MIR 8 239 -23 180 280 60 0 chr12 125348416 125348466 -18934023 + L2 LINE L2 3261 3313 0 214 240 40 0 chr12 125348486 125348536 -18933953 + MIR SINE MIR 39 90 -118 255 313 9 36 chr12 125348604 125348716 -18933773 + MIR SINE MIR 112 220 -42 740 125 23 31 chr12 125348727 125348855 -18933634 + FLAM_C SINE Alu 2 128 -15 28 0 0 0 chr12 125348855 125348883 -18933606 + AT_rich Low_complexity Low_complexity 1 28 0 385 262 97 0 chr12 125349429 125349532 -18932957 + MER81 DNA DNA 1 113 -1 200 242 0 0 chr12 125349539 125349572 -18932917 - MER91 DNA MER1_type -77 63 31 209 255 0 0 chr12 125350052 125350103 -18932386 - MIR3 SINE MIR -5 203 153 461 271 17 0 chr12 125350103 125350221 -18932268 - MER117 DNA MER1_type 0 197 78 314 260 63 24 chr12 125350345 125350368 -18932121 - MIR SINE MIR -28 234 213 1038 146 29 121 chr12 125350368 125350396 -18932093 - MER20 DNA MER1_type 0 219 190 2145 116 3 0 chr12 125350396 125350697 -18931792 - AluSx SINE Alu -10 302 1 1038 146 29 121 chr12 125350697 125350907 -18931582 - MER20 DNA MER1_type -29 190 3 314 260 63 24 chr12 125350907 125351010 -18931479 - MIR SINE MIR -49 213 103 197 222 32 48 chr12 125351722 125351785 -18930704 + L3 LINE CR1 1419 1480 -97 213 80 40 20 chr12 125352091 125352141 -18930348 + T-rich Low_complexity Low_complexity 1 51 0 349 287 13 53 chr12 125352212 125352362 -18930127 - MER5A DNA MER1_type -39 150 7 1085 134 14 74 chr12 125353092 125353309 -18929180 - L1MC1 LINE L1 0 6333 6130 1999 119 0 10 chr12 125353312 125353607 -18928882 - AluSx SINE Alu -20 292 1 800 198 38 19 chr12 125353609 125353821 -18928668 - L1MD3 LINE L1 -10 7985 7770 511 251 163 15 chr12 125353835 125354038 -18928451 + MIR SINE MIR 30 262 0 214 171 0 0 chr12 125354151 125354186 -18928303 + A-rich Low_complexity Low_complexity 2 36 0 2336 71 0 0 chr12 125354279 125354576 -18927913 - AluY SINE Alu -14 297 1 237 175 0 0 chr12 125354864 125354904 -18927585 - MIR SINE MIR -133 129 90 745 163 106 38 chr12 125354944 125355024 -18927465 - MER45A DNA AcHobo -1403 178 105 2153 117 0 0 chr12 125355024 125355331 -18927158 + AluSx SINE Alu 1 307 -5 745 163 106 38 chr12 125355331 125355410 -18927079 - MER45A DNA AcHobo -1476 105 8 219 341 74 23 chr12 125355441 125355658 -18926831 - L2 LINE L2 -1154 2160 1933 2185 83 7 0 chr12 125355695 125355985 -18926504 + AluSc SINE Alu 10 301 -8 639 161 0 42 chr12 125355985 125356103 -18926386 + L1PB3 LINE L1 5680 5792 -362 275 154 19 48 chr12 125356123 125356227 -18926262 + (TA)n Simple_repeat Simple_repeat 1 101 0 2218 141 30 6 chr12 125356238 125356600 -18925889 + L1PB3 LINE L1 5782 6152 -2 922 130 130 35 chr12 125357228 125357428 -18925061 - MER20 DNA MER1_type 0 219 1 1663 82 9 4 chr12 125357490 125357723 -18924766 - AluSq SINE Alu -15 298 65 1291 131 0 15 chr12 125357836 125358042 -18924447 + AluSg/x SINE Alu 104 306 -6 210 236 22 56 chr12 125358145 125358234 -18924255 + MIR SINE MIR 177 262 0 828 172 8 0 chr12 125358428 125358562 -18923927 + AluJo SINE Alu 2 136 -176 348 270 34 60 chr12 125358570 125358707 -18923782 - MIR3 SINE MIR -99 109 2 998 174 0 0 chr12 125359025 125359186 -18923303 - FRAM SINE Alu -5 161 1 1817 126 36 0 chr12 125359208 125359485 -18923004 - AluSx SINE Alu -25 287 1 1496 127 127 40 chr12 125359625 125359900 -18922589 - AluSx SINE Alu -11 301 3 298 182 0 15 chr12 125359902 125359968 -18922521 - MLT1D LTR MaLR -176 329 265 940 145 0 19 chr12 125360297 125360456 -18922033 - FRAM SINE Alu -1 175 20 240 344 75 19 chr12 125360652 125360812 -18921677 + MIR SINE MIR 6 174 -88 2192 119 0 0 chr12 125361041 125361377 -18921112 + AluSx SINE Alu 2 312 0 305 211 0 0 chr12 125361425 125361482 -18921007 + MIR SINE MIR 129 185 -77 562 277 15 0 chr12 125361525 125361662 -18920827 + MIR SINE MIR 16 154 -108 458 167 0 105 chr12 125361691 125361723 -18920766 - MIR3 SINE MIR -38 170 136 249 33 0 0 chr12 125361723 125361753 -18920736 + (ATG)n Simple_repeat Simple_repeat 1 30 0 458 167 0 105 chr12 125361753 125361834 -18920655 - MIR3 SINE MIR -72 136 69 231 36 0 0 chr12 125362337 125362365 -18920124 + (TA)n Simple_repeat Simple_repeat 2 29 0 1779 138 3 17 chr12 125362979 125363304 -18919185 - AluJo SINE Alu 0 321 1 404 248 80 16 chr12 125364040 125364165 -18918324 + MIR SINE MIR 59 191 -71 531 255 78 31 chr12 125364340 125364532 -18917957 + MIR SINE MIR 28 228 -34 1360 147 29 103 chr12 125364825 125365137 -18917352 - AluJb SINE Alu -12 290 2 2044 124 0 10 chr12 125365139 125365445 -18917044 - AluSx SINE Alu -9 303 1 344 291 113 7 chr12 125365494 125365635 -18916854 + MIR SINE MIR 6 161 -101 463 252 19 0 chr12 125365803 125365910 -18916579 + MIR SINE MIR 51 159 -103 532 246 77 92 chr12 125365957 125366099 -18916390 + L1MC/D LINE L1 5284 5427 -2381 1773 158 44 0 chr12 125366099 125366396 -18916093 + AluSx SINE Alu 1 310 -2 532 246 77 92 chr12 125366396 125366590 -18915899 + L1MC/D LINE L1 5427 5615 -2193 2041 203 103 2 chr12 125366590 125367048 -18915441 + MLT1D LTR MaLR 1 504 -1 451 279 45 6 chr12 125367049 125367228 -18915261 + L1MC/D LINE L1 5611 5796 -2012 199 197 0 42 chr12 125367229 125367300 -18915189 + GA-rich Low_complexity Low_complexity 1 68 0 774 209 0 13 chr12 125367311 125367469 -18915020 + FRAM SINE Alu 20 175 -1 425 224 52 75 chr12 125368640 125368774 -18913715 + MIR SINE MIR 23 153 -109 2130 127 0 0 chr12 125368909 125369208 -18913281 + AluSx SINE Alu 1 299 -13 750 179 68 63 chr12 125369609 125369799 -18912690 - MLT2F LTR ERVL 0 663 473 1764 252 67 72 chr12 125369803 125370525 -18911964 - MER21B LTR ERV1 -122 741 24 835 171 7 13 chr12 125370616 125370768 -18911721 + MLT1A1 LTR MaLR 1 151 -214 1840 171 13 3 chr12 125370772 125371070 -18911419 + AluJo SINE Alu 1 301 -11 2471 69 0 28 chr12 125371075 125371394 -18911095 + AluY SINE Alu 1 310 -1 338 146 0 42 chr12 125371396 125371492 -18910997 + (GGAGAA)n Simple_repeat Simple_repeat 3 94 0 753 189 21 68 chr12 125371523 125371652 -18910837 + MLT1A1 LTR MaLR 193 312 -62 1799 145 30 0 chr12 125371652 125371921 -18910568 + AluJb SINE Alu 25 301 -11 753 189 21 68 chr12 125371921 125371982 -18910507 + MLT1A1 LTR MaLR 312 374 0 981 234 159 15 chr12 125371993 125372326 -18910163 - MLT2F LTR ERVL -280 383 3 1996 121 33 0 chr12 125372499 125372801 -18909688 - AluSx SINE Alu 0 311 1 2338 103 0 3 chr12 125372893 125373195 -18909294 - AluSq SINE Alu -12 301 1 1936 130 24 14 chr12 125373310 125373603 -18908886 - AluJo SINE Alu -6 306 11 1913 161 13 16 chr12 125374053 125374364 -18908125 + AluJo SINE Alu 1 310 -2 1251 114 24 0 chr12 125374544 125374711 -18907778 + AluSx SINE Alu 1 171 -141 341 197 17 77 chr12 125375089 125375206 -18907283 + LTR67 LTR ERVL 435 544 -13 2096 112 21 0 chr12 125375263 125375607 -18906882 - AluSx SINE Alu 0 312 1 1769 162 0 39 chr12 125375609 125375917 -18906572 - AluJo SINE Alu -16 296 1 839 320 94 25 chr12 125375994 125376441 -18906048 + L2 LINE L2 2836 3313 0 932 227 96 0 chr12 125376450 125376670 -18905819 - MIR SINE MIR -7 255 15 364 143 0 26 chr12 125376682 125376759 -18905730 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 2030 145 3 3 chr12 125377656 125377953 -18904536 + AluJo SINE Alu 1 297 -15 325 265 12 0 chr12 125378212 125378295 -18904194 - MER81 DNA DNA -29 85 2 21 0 0 0 chr12 125378827 125378848 -18903641 + AT_rich Low_complexity Low_complexity 1 21 0 2129 127 0 0 chr12 125379649 125379940 -18902549 - AluSx SINE Alu -21 291 1 1425 141 0 23 chr12 125379992 125380212 -18902277 + AluJb SINE Alu 84 298 -14 965 208 9 0 chr12 125380493 125380705 -18901784 - MER20 DNA MER1_type -5 214 1 579 234 0 8 chr12 125380937 125381065 -18901424 + MER94 DNA DNA 8 134 0 769 104 0 9 chr12 125381235 125381341 -18901148 + AluSq/x SINE Alu 1 105 -208 1767 174 10 3 chr12 125381374 125381662 -18900827 - AluJb SINE Alu -22 290 1 2488 151 8 77 chr12 125381692 125382092 -18900397 + L1MB3 LINE L1 5688 6044 -139 2053 121 3 10 chr12 125382092 125382390 -18900099 + AluSx SINE Alu 3 298 -14 2488 151 8 77 chr12 125382390 125382520 -18899969 + L1MB3 LINE L1 6044 6181 -2 1893 167 0 13 chr12 125383435 125383735 -18898754 - AluJo SINE Alu -12 300 5 222 182 121 45 chr12 125384131 125384197 -18898292 - L2 LINE L2 0 3313 3243 2040 140 6 16 chr12 125384568 125384883 -18897606 - AluJo SINE Alu 0 312 1 190 216 363 10 chr12 125385073 125385175 -18897314 - MIR SINE MIR -116 146 9 2188 133 0 0 chr12 125385365 125385666 -18896823 - AluSx SINE Alu -7 305 5 616 268 79 26 chr12 125385829 125386019 -18896470 + MIR SINE MIR 1 200 -62 2297 96 3 23 chr12 125386180 125386483 -18896006 - AluSx SINE Alu -15 297 1 2296 218 55 20 chr12 125387570 125388167 -18894322 + MLT1E3 LTR MaLR 7 624 0 3646 170 40 15 chr12 125388401 125388440 -18894049 + L1MB7 LINE L1 5439 5476 -708 2644 47 0 0 chr12 125388440 125388738 -18893751 + AluY SINE Alu 1 298 -13 3646 170 40 15 chr12 125388738 125389426 -18893063 + L1MB7 LINE L1 5476 6184 0 361 241 78 0 chr12 125389511 125389627 -18892862 - L1MC4 LINE L1 0 8042 7918 253 79 26 0 chr12 125390197 125390235 -18892254 + MER117 DNA MER1_type 117 155 -42 201 359 0 0 chr12 125390959 125391023 -18891466 - MIR SINE MIR -63 145 82 432 259 60 65 chr12 125391093 125391235 -18891254 + MIR SINE MIR 73 215 -47 1616 217 114 48 chr12 125391235 125391327 -18891162 + MLT1D LTR MaLR 1 86 -419 2079 140 0 0 chr12 125391327 125391619 -18890870 - AluSx SINE Alu -20 292 1 1616 217 114 48 chr12 125391619 125392000 -18890489 + MLT1D LTR MaLR 86 505 0 432 259 60 65 chr12 125392000 125392042 -18890447 + MIR SINE MIR 215 256 -6 890 195 22 11 chr12 125392043 125392228 -18890261 + MER58A DNA MER1_type 35 221 -3 669 236 212 62 chr12 125392290 125392776 -18889713 + MLT1G LTR MaLR 2 553 -2 874 132 0 22 chr12 125392892 125393028 -18889461 - FLAM_C SINE Alu 0 133 1 234 265 154 34 chr12 125393091 125393208 -18889281 - MIR SINE MIR -52 210 80 254 193 42 17 chr12 125393681 125393800 -18888689 + (CA)n Simple_repeat Simple_repeat 1 122 0 850 139 8 0 chr12 125393882 125394011 -18888478 + FRAM SINE Alu 1 130 -46 333 0 0 0 chr12 125394018 125394055 -18888434 + (TG)n Simple_repeat Simple_repeat 1 37 0 1450 111 58 0 chr12 125394098 125394324 -18888165 - MER41A LTR ERV1 0 554 316 929 75 0 76 chr12 125394335 125394808 -18887681 + (TTCCC)n Simple_repeat Simple_repeat 1 614 0 1937 144 14 3 chr12 125395475 125395767 -18886722 + AluJo SINE Alu 13 307 -5 365 296 30 30 chr12 125396076 125396208 -18886281 - L2 LINE L2 -223 3049 2918 894 191 6 0 chr12 125396368 125396525 -18885964 + FRAM SINE Alu 1 158 -8 2592 154 27 23 chr12 125396535 125396614 -18885875 + L1MB5 LINE L1 5688 5765 -409 2210 135 138 5 chr12 125396614 125396992 -18885497 + MSTA LTR MaLR 1 428 0 2592 154 27 23 chr12 125396992 125397391 -18885098 + L1MB5 LINE L1 5765 6168 -6 1433 185 82 11 chr12 125397706 125397987 -18884502 + AluJb SINE Alu 1 301 -11 2721 74 34 3 chr12 125398174 125398527 -18883962 + THE1B LTR MaLR 1 364 0 2077 127 0 7 chr12 125398889 125399362 -18883127 + AluSx SINE Alu 21 491 0 779 155 11 17 chr12 125399181 125399397 -18883092 + GA-rich Low_complexity Low_complexity 1 215 0 1147 196 19 5 chr12 125399470 125399684 -18882805 + MER20 DNA MER1_type 1 217 -2 1817 162 16 29 chr12 125400095 125400409 -18882080 + AluJb SINE Alu 1 310 -2 1088 205 57 4 chr12 125400545 125400808 -18881681 + MLT1C LTR MaLR 1 277 -190 679 118 0 132 chr12 125400809 125400945 -18881544 + AluSq/x SINE Alu 2 119 -194 280 136 0 0 chr12 125400955 125400999 -18881490 - THE1B LTR MaLR -320 44 1 3317 185 65 52 chr12 125401011 125401283 -18881206 + L1ME1 LINE L1 5318 5585 -749 2312 125 0 3 chr12 125401283 125401596 -18880893 - AluJo SINE Alu 0 312 1 3317 185 65 52 chr12 125401596 125402041 -18880448 + L1ME1 LINE L1 5585 6214 -120 2432 99 0 0 chr12 125402041 125402366 -18880123 + AluSx SINE Alu 1 325 0 3317 185 65 52 chr12 125402366 125402489 -18880000 + L1ME1 LINE L1 6214 6334 0 2001 141 31 0 chr12 125403342 125403632 -18878857 - AluSx SINE Alu -13 299 1 212 364 67 6 chr12 125403643 125403808 -18878681 + L2 LINE L2 2610 2784 -530 310 313 22 30 chr12 125403817 125403951 -18878538 - MER5A DNA MER1_type -22 167 35 405 258 76 15 chr12 125404358 125404490 -18877999 + L2 LINE L2 3173 3312 -1 232 347 31 20 chr12 125405155 125405253 -18877236 + MIR SINE MIR 9 107 -155 257 361 35 28 chr12 125405390 125405534 -18876955 - MIR SINE MIR -65 197 53 234 62 0 0 chr12 125406168 125406200 -18876289 + (TC)n Simple_repeat Simple_repeat 2 33 0 2441 88 3 0 chr12 125406438 125406744 -18875745 + AluSg1 SINE Alu 1 307 -2 1761 179 23 3 chr12 125406879 125407181 -18875308 - AluJo SINE Alu -4 308 1 421 340 39 39 chr12 125407441 125407700 -18874789 + MIR SINE MIR 3 261 -1 4335 118 154 24 chr12 125407869 125409242 -18873247 + pTR5 LTR ERV1 743 2438 0 252 228 40 59 chr12 125409338 125409439 -18873050 - MIR SINE MIR -67 141 43 2146 109 0 17 chr12 125411088 125411381 -18871108 - AluSx SINE Alu -24 288 1 369 257 29 29 chr12 125411389 125411494 -18870995 + L2 LINE L2 3166 3270 -43 354 259 44 15 chr12 125411821 125411956 -18870533 + MER103 DNA DNA 3 141 -25 198 103 0 0 chr12 125411956 125411985 -18870504 + (T)n Simple_repeat Simple_repeat 1 29 0 2179 137 0 0 chr12 125412173 125412472 -18870017 + AluSx SINE Alu 1 299 -13 2215 135 0 0 chr12 125414028 125414331 -18868158 - AluSx SINE Alu -9 303 1 281 149 0 0 chr12 125414647 125414694 -18867795 + MER58B DNA MER1_type 56 102 -239 1992 127 7 0 chr12 125414703 125414979 -18867510 + AluSx SINE Alu 7 284 -28 1596 159 43 0 chr12 125415057 125415314 -18867175 + AluJo SINE Alu 1 268 -44 2029 167 20 23 chr12 125415317 125415403 -18867086 + MER57A LTR ERV1 10 95 -308 2315 78 0 17 chr12 125415403 125415699 -18866790 + AluSx SINE Alu 1 291 -21 2029 167 20 23 chr12 125415699 125416007 -18866482 + MER57A LTR ERV1 95 403 0 718 266 0 20 chr12 125416033 125416151 -18866338 + MER58B DNA MER1_type 143 257 -2163 1359 164 110 25 chr12 125416151 125416468 -18866021 + MER2 DNA MER2_type 1 344 0 718 266 0 20 chr12 125416468 125416552 -18865937 + MER58B DNA MER1_type 257 341 0 2067 126 0 13 chr12 125417096 125417398 -18865091 + AluJb SINE Alu 1 298 -14 370 283 115 0 chr12 125417439 125417552 -18864937 - MIR SINE MIR -29 233 108 2085 126 17 0 chr12 125418175 125418476 -18864013 - AluSp SINE Alu -7 306 1 1747 192 0 3 chr12 125418741 125419038 -18863451 + AluJo SINE Alu 1 296 -16 221 276 0 82 chr12 125419078 125419176 -18863313 + MIR SINE MIR 56 145 -117 2462 87 7 0 chr12 125420443 125420742 -18861747 + AluSx SINE Alu 1 301 -11 452 285 70 47 chr12 125420958 125421015 -18861474 + MER5A DNA MER1_type 11 65 -124 913 130 0 0 chr12 125421015 125421146 -18861343 + FLAM_C SINE Alu 1 131 -2 452 285 70 47 chr12 125421146 125421260 -18861229 + MER5A DNA MER1_type 65 186 -3 223 299 87 55 chr12 125421147 125421274 -18861215 - MER5A DNA MER1_type -55 134 4 * 214 279 133 66 chr12 125421274 125421395 -18861094 + MIR3 SINE MIR 44 170 -38 1780 157 47 68 chr12 125421441 125421750 -18860739 + L1MB3 LINE L1 5725 6039 -144 2056 115 4 4 chr12 125421750 125422028 -18860461 + AluSx SINE Alu 1 270 -42 219 69 0 0 chr12 125422028 125422057 -18860432 + (CA)n Simple_repeat Simple_repeat 2 30 0 1780 157 47 68 chr12 125422057 125422155 -18860334 + L1MB3 LINE L1 6037 6124 -59 1634 147 16 44 chr12 125422216 125422536 -18859953 + AluJo SINE Alu 2 312 0 25 31 0 0 chr12 125422923 125422955 -18859534 + AT_rich Low_complexity Low_complexity 1 32 0 304 307 9 12 chr12 125423864 125423979 -18858510 - MIR SINE MIR -33 175 57 444 235 82 8 chr12 125424675 125424817 -18857672 - MIR SINE MIR -62 146 40 205 256 192 0 chr12 125425208 125425286 -18857203 + MER5A DNA MER1_type 2 94 -95 279 79 0 0 chr12 125425298 125425336 -18857153 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 1913 108 3 28 chr12 125425358 125425645 -18856844 - AluSx SINE Alu -32 280 1 818 274 87 57 chr12 125425826 125426033 -18856456 - L2 LINE L2 -1 3312 3113 1057 169 63 5 chr12 125426033 125426240 -18856249 + MER20 DNA MER1_type 1 219 0 818 274 87 57 chr12 125426240 125426668 -18855821 - L2 LINE L2 -200 3113 2542 2239 94 3 0 chr12 125426668 125426975 -18855514 + AluSx SINE Alu 1 308 -4 818 274 87 57 chr12 125426975 125427056 -18855433 - L2 LINE L2 -771 2542 2465 986 184 22 40 chr12 125427140 125427363 -18855126 + MER20 DNA MER1_type 1 219 0 186 71 0 0 chr12 125427824 125427852 -18854637 + (CCA)n Simple_repeat Simple_repeat 1 28 0 1045 227 27 9 chr12 125428383 125428603 -18853886 + MER58A DNA MER1_type 1 224 0 808 150 0 23 chr12 125428773 125428906 -18853583 - FLAM_C SINE Alu -3 130 1 4229 137 19 40 chr12 125429266 125429855 -18852634 - MER50 LTR ERV1 -17 717 117 201 39 0 0 chr12 125429855 125429881 -18852608 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4229 137 19 40 chr12 125429881 125429892 -18852597 - MER50 LTR ERV1 -617 117 107 2004 102 0 7 chr12 125429892 125430167 -18852322 - AluSx SINE Alu -39 273 1 4229 137 19 40 chr12 125430167 125430296 -18852193 - MER50 LTR ERV1 -627 107 2 21 0 0 0 chr12 125430332 125430353 -18852136 + AT_rich Low_complexity Low_complexity 1 21 0 1635 146 50 7 chr12 125430358 125430638 -18851851 + AluSg SINE Alu 1 292 -18 189 0 0 0 chr12 125430639 125430660 -18851829 + (TA)n Simple_repeat Simple_repeat 2 22 0 3349 179 13 48 chr12 125430662 125431406 -18851083 - L1MB5 LINE L1 -12 6162 5445 1918 91 3 62 chr12 125431590 125431899 -18850590 - AluSx SINE Alu -21 291 1 252 122 0 0 chr12 125431912 125431953 -18850536 + (GA)n Simple_repeat Simple_repeat 2 42 0 507 85 45 40 chr12 125431956 125432133 -18850356 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 5106 130 41 7 chr12 125432153 125432495 -18849994 - L1PB4 LINE L1 -10 6146 5817 351 0 0 0 chr12 125432495 125432534 -18849955 + (TG)n Simple_repeat Simple_repeat 1 39 0 5106 130 41 7 chr12 125432534 125433148 -18849341 - L1PB4 LINE L1 -339 5817 5157 654 133 0 0 chr12 125433379 125433477 -18849012 - AluSg/x SINE Alu 0 310 213 1534 174 11 7 chr12 125433493 125433763 -18848726 - MER66B LTR ERV1 -215 271 1 281 250 80 45 chr12 125433795 125433907 -18848582 + LTR16A LTR ERVL 319 434 -16 275 326 37 48 chr12 125434231 125434418 -18848071 + L2 LINE L2 2877 3061 -211 433 215 177 67 chr12 125434418 125434627 -18847862 - ORSL DNA AcHobo -19 256 25 345 278 28 0 chr12 125434762 125434870 -18847619 + L2 LINE L2 3201 3311 -2 1545 164 3 45 chr12 125434929 125435241 -18847248 - AluJo SINE Alu -13 299 1 2016 129 0 0 chr12 125436091 125436371 -18846118 + AluSx SINE Alu 1 280 -32 851 170 7 0 chr12 125436395 125436542 -18845947 + FRAM SINE Alu 13 160 -16 791 148 7 22 chr12 125436555 125436690 -18845799 + FLAM_C SINE Alu 1 133 0 1667 137 54 126 chr12 125437203 125437589 -18844900 - L1MB8 LINE L1 0 6178 5830 2778 135 9 11 chr12 125437589 125438040 -18844449 - L1PA16 LINE L1 0 6166 5717 1667 137 54 126 chr12 125438040 125438114 -18844375 - L1MB8 LINE L1 -348 5830 5752 180 0 0 0 chr12 125438122 125438142 -18844347 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 1236 161 68 41 chr12 125438143 125438259 -18844230 - L1MA4 LINE L1 0 6300 6189 2067 129 0 3 chr12 125438259 125438562 -18843927 - AluSx SINE Alu -10 302 1 1236 161 68 41 chr12 125438562 125438737 -18843752 - L1MA4 LINE L1 -111 6189 6001 1954 157 30 16 chr12 125438741 125439111 -18843378 - L1MB8 LINE L1 -575 5603 5228 1956 132 0 28 chr12 125439111 125439430 -18843059 - AluJb SINE Alu -2 310 1 1954 157 30 16 chr12 125439430 125439622 -18842867 - L1MB8 LINE L1 -950 5228 5040 1361 138 13 29 chr12 125439654 125439893 -18842596 - AluJo SINE Alu -77 235 1 804 206 72 9 chr12 125439898 125440121 -18842368 - L1MB8 LINE L1 -1086 5060 4824 * 944 143 112 0 chr12 125440099 125440226 -18842263 - L1MA4 LINE L1 -690 5622 5472 234 0 0 0 chr12 125440226 125440252 -18842237 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 944 143 112 0 chr12 125440252 125440285 -18842204 - L1MA4 LINE L1 -840 5472 5444 3428 175 36 24 chr12 125440285 125440982 -18841507 + L1MA10 LINE L1 5629 6333 -1 1899 144 17 3 chr12 125440992 125441283 -18841206 + AluJo SINE Alu 1 295 -17 2062 99 3 0 chr12 125441538 125441861 -18840628 - AluSx SINE Alu 0 324 1 375 273 123 13 chr12 125441891 125442045 -18840444 + Charlie8 DNA MER1_type 1 171 -2246 405 69 0 0 chr12 125442257 125442315 -18840174 + Alu SINE Alu 2 59 -250 991 277 108 31 chr12 125443368 125443887 -18838602 + L1MC4a LINE L1 5257 5827 -1981 2191 95 7 0 chr12 125443887 125444181 -18838308 + AluSc SINE Alu 1 296 -13 991 277 108 31 chr12 125444181 125444245 -18838244 + L1MC4a LINE L1 5827 5885 -1923 431 280 36 76 chr12 125444570 125444749 -18837740 + MIR SINE MIR 54 229 -33 2631 142 21 7 chr12 125444749 125445171 -18837318 + MSTC LTR MaLR 1 428 0 431 280 36 76 chr12 125445171 125445197 -18837292 + MIR SINE MIR 229 254 -8 2110 98 0 7 chr12 125445477 125445763 -18836726 + AluSx SINE Alu 1 284 -28 375 192 0 0 chr12 125445766 125445844 -18836645 + GA-rich Low_complexity Low_complexity 3 80 0 235 281 228 35 chr12 125446091 125446196 -18836293 + L2 LINE L2 3134 3264 -8 2136 138 0 0 chr12 125446196 125446507 -18835982 - AluSx SINE Alu -1 311 1 1496 110 0 0 chr12 125446871 125447071 -18835418 + AluSc SINE Alu 89 288 -21 2014 133 0 9 chr12 125448049 125448364 -18834125 - AluSx SINE Alu 0 312 1 370 315 31 44 chr12 125448364 125448574 -18833915 - MIR SINE MIR -58 204 2 867 154 0 0 chr12 125448604 125448747 -18833742 - FLAM_C SINE Alu 0 143 1 1791 159 10 126 chr12 125448759 125449244 -18833245 - L1MB7 LINE L1 -77 6107 5679 2119 119 0 3 chr12 125449416 125449719 -18832770 + AluJb SINE Alu 1 302 -10 405 0 0 0 chr12 125449841 125449886 -18832603 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1897 125 4 0 chr12 125449889 125450170 -18832319 - AluSq SINE Alu -31 282 1 710 95 0 9 chr12 125450635 125450740 -18831749 + AluSg/x SINE Alu 204 307 -3 1984 136 10 0 chr12 125451213 125451515 -18830974 + AluSx SINE Alu 3 307 -5 3295 153 38 37 chr12 125451518 125452083 -18830406 + L1MB7 LINE L1 5134 5696 -488 2105 101 13 28 chr12 125452083 125452400 -18830089 + AluSx SINE Alu 1 312 0 3295 153 38 37 chr12 125452400 125452606 -18829883 + L1MB7 LINE L1 5696 5900 -284 1221 126 0 0 chr12 125452618 125452793 -18829696 + AluSq SINE Alu 107 281 -32 225 0 0 0 chr12 125452793 125452818 -18829671 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 577 106 115 0 chr12 125452819 125452923 -18829566 + L1MB7 LINE L1 6060 6175 -9 354 249 117 33 chr12 125453202 125453415 -18829074 + L1ME4a LINE L1 5888 6118 -3 1793 146 3 10 chr12 125453438 125453732 -18828757 + AluJb SINE Alu 21 312 0 206 279 13 51 chr12 125454423 125454502 -18827987 + L2 LINE L2 3234 3309 -4 1099 189 9 19 chr12 125454557 125454769 -18827720 - MER20 DNA MER1_type 0 219 10 1668 185 0 13 chr12 125454784 125455098 -18827391 + AluJo SINE Alu 2 311 -1 210 294 82 0 chr12 125455205 125455290 -18827199 - MIR3 SINE MIR -6 202 111 2043 106 20 3 chr12 125455488 125455781 -18826708 + AluSx SINE Alu 1 298 -14 1649 164 0 21 chr12 125455790 125456077 -18826412 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr12 125456079 125456106 -18826383 + (TC)n Simple_repeat Simple_repeat 1 27 0 187 200 0 0 chr12 125456171 125456201 -18826288 + L2 LINE L2 3228 3257 -15 315 319 71 16 chr12 125457624 125457806 -18824683 + L1ME4a LINE L1 5894 6085 -36 294 263 63 21 chr12 125458294 125458389 -18824100 - MIR3 SINE MIR -23 185 87 258 32 0 0 chr12 125458453 125458484 -18824005 + (CA)n Simple_repeat Simple_repeat 2 32 0 2292 57 3 10 chr12 125458698 125458994 -18823495 + AluY SINE Alu 1 294 -17 1830 128 4 4 chr12 125459080 125459361 -18823128 - AluJo SINE Alu -31 281 1 661 200 133 10 chr12 125460480 125460675 -18821814 - MER20 DNA MER1_type 0 219 1 243 252 58 86 chr12 125461076 125461215 -18821274 + L1MC/D LINE L1 5705 5839 -1969 378 206 93 9 chr12 125461551 125461658 -18820831 - MIR SINE MIR -80 182 67 2277 89 0 3 chr12 125461958 125462262 -18820227 + AluSx SINE Alu 2 304 -8 1122 109 6 0 chr12 125462519 125462675 -18819814 - AluSx SINE Alu -151 161 5 281 285 108 15 chr12 125463121 125463251 -18819238 + MIR3 SINE MIR 2 143 -65 203 159 45 23 chr12 125467415 125467459 -18815030 + GA-rich Low_complexity Low_complexity 5 49 0 206 371 62 0 chr12 125469877 125469974 -18812515 + MIR SINE MIR 39 141 -67 1712 103 153 4 chr12 125471880 125472141 -18810348 + AluSq SINE Alu 2 301 -2 417 274 96 14 chr12 125472264 125472410 -18810079 + MER5B DNA MER1_type 21 178 0 1316 194 89 8 chr12 125472544 125472791 -18809698 + Tigger7 DNA MER2_type 1 267 -2220 492 129 153 0 chr12 125472788 125472873 -18809616 + Tigger7 DNA MER2_type 2389 2486 -1 * 22 0 0 0 chr12 125472939 125472961 -18809528 + AT_rich Low_complexity Low_complexity 1 22 0 2563 54 0 3 chr12 125473049 125473347 -18809142 + AluY SINE Alu 1 297 -14 291 286 78 31 chr12 125473508 125473700 -18808789 - L1ME4a LINE L1 -223 5898 5698 408 245 286 0 chr12 125475049 125475290 -18807199 + L1ME4a LINE L1 5741 6050 -71 551 272 92 31 chr12 125475663 125475858 -18806631 + L2 LINE L2 3104 3310 -3 1443 207 73 65 chr12 125476320 125476828 -18805661 - Charlie1a DNA MER1_type 0 1455 944 2529 161 84 34 chr12 125476832 125477333 -18805156 + L1MB8 LINE L1 5557 6031 -147 2604 65 0 3 chr12 125477333 125477643 -18804846 - AluY SINE Alu -2 309 1 2143 122 20 0 chr12 125477643 125477946 -18804543 - AluSx SINE Alu -3 309 1 2529 161 84 34 chr12 125477946 125478035 -18804454 + L1MB8 LINE L1 6030 6178 0 3347 184 74 10 chr12 125478051 125478875 -18803614 - Charlie1a DNA MER1_type -510 945 5 364 235 137 26 chr12 125478878 125478905 -18803584 - MLT1I LTR MaLR -19 394 371 1561 198 3 40 chr12 125478905 125479229 -18803260 + AluJo SINE Alu 1 312 0 364 235 137 26 chr12 125479229 125479518 -18802971 - MLT1I LTR MaLR -42 371 2 336 245 39 45 chr12 125479563 125479718 -18802771 - Charlie8 DNA MER1_type -2171 246 93 925 152 0 0 chr12 125479736 125479868 -18802621 + AluJo/FLAM SINE Alu 1 132 -180 2350 107 3 0 chr12 125479868 125480177 -18802312 + AluSx SINE Alu 1 310 -2 3567 119 59 28 chr12 125480552 125480633 -18801856 + Tigger3(Golem) DNA MER2_type 2255 2332 -706 2251 78 14 7 chr12 125480633 125480926 -18801563 - AluY SINE Alu -16 295 1 3567 119 59 28 chr12 125480926 125481317 -18801172 + Tigger3(Golem) DNA MER2_type 2332 2821 -217 2287 119 0 0 chr12 125481317 125481619 -18800870 - AluSx SINE Alu -10 302 1 3567 119 59 28 chr12 125481619 125481843 -18800646 + Tigger3(Golem) DNA MER2_type 2821 3037 -1 506 324 107 28 chr12 125481992 125482310 -18800179 - L2 LINE L2 0 3313 2971 867 275 136 20 chr12 125482328 125482681 -18799808 - L2 LINE L2 -570 2744 2351 911 152 25 99 chr12 125482712 125482892 -18799597 + L1MB3 LINE L1 5959 6151 -32 2277 107 0 3 chr12 125482892 125483181 -18799308 + AluSx SINE Alu 1 288 -24 911 152 25 99 chr12 125483181 125483200 -18799289 + L1MB3 LINE L1 6151 6140 -43 2352 94 13 7 chr12 125483200 125483509 -18798980 + AluSp SINE Alu 1 311 -2 911 152 25 99 chr12 125483509 125483551 -18798938 + L1MB3 LINE L1 6139 6183 0 525 243 100 58 chr12 125483566 125483825 -18798664 - L2 LINE L2 -1007 2307 2038 249 247 62 0 chr12 125484016 125484097 -18798392 + MER94 DNA DNA 11 96 -38 627 191 22 26 chr12 125484748 125485164 -18797325 + GA-rich Low_complexity Low_complexity 1 414 0 873 174 0 0 chr12 125485727 125485859 -18796630 - FLAM_A SINE Alu 0 133 2 2194 133 0 0 chr12 125485960 125486260 -18796229 - AluSx SINE Alu -12 300 1 339 256 89 67 chr12 125486542 125486657 -18795832 + MIR SINE MIR 55 177 -85 2084 141 3 0 chr12 125486657 125486956 -18795533 + AluSx SINE Alu 1 300 -12 339 256 89 67 chr12 125486956 125487020 -18795469 + MIR SINE MIR 177 238 -24 526 262 0 24 chr12 125487177 125487303 -18795186 - MIR SINE MIR -63 145 23 189 147 0 0 chr12 125487653 125487687 -18794802 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2219 133 0 0 chr12 125487796 125488097 -18794392 - AluSx SINE Alu -11 301 1 623 123 0 0 chr12 125488101 125488182 -18794307 - AluS SINE Alu -230 82 2 408 169 56 22 chr12 125488306 125488395 -18794094 + MER103 DNA DNA 1 92 -74 324 318 27 18 chr12 125488401 125488511 -18793978 - L2 LINE L2 0 3272 3162 2190 105 3 0 chr12 125488587 125488873 -18793616 + AluSx SINE Alu 11 297 -15 560 257 7 33 chr12 125488873 125489019 -18793470 - MER5B DNA MER1_type -34 144 3 336 23 0 0 chr12 125489204 125489247 -18793242 + L1PB1 LINE L1 5571 5613 -538 2289 77 0 37 chr12 125489251 125489549 -18792940 + AluY SINE Alu 5 291 -20 3923 87 13 6 chr12 125489563 125490113 -18792376 + L1PB1 LINE L1 5593 6146 -5 2372 89 0 0 chr12 125490379 125490671 -18791818 + AluSq SINE Alu 10 301 -12 1521 175 52 35 chr12 125491762 125492048 -18790441 + AluJo SINE Alu 13 303 -9 672 58 12 0 chr12 125492183 125492269 -18790220 - AluS SINE Alu -224 88 2 965 205 6 0 chr12 125492283 125492449 -18790040 + FRAM SINE Alu 1 162 -14 480 338 5 9 chr12 125492457 125492667 -18789822 + L1MC4a LINE L1 5703 5911 -1897 427 295 85 66 chr12 125492785 125492956 -18789533 - Charlie8 DNA MER1_type -62 279 100 787 160 32 0 chr12 125492956 125493081 -18789408 - FLAM_A SINE Alu -4 129 1 427 295 85 66 chr12 125493081 125493180 -18789309 - Charlie8 DNA MER1_type -241 100 4 370 218 58 0 chr12 125493251 125493338 -18789151 + MIR3 SINE MIR 111 202 -6 257 319 133 26 chr12 125493492 125493605 -18788884 - L2 LINE L2 0 3272 3148 1926 152 0 46 chr12 125493785 125494108 -18788381 - AluJb SINE Alu -4 308 1 525 279 26 32 chr12 125494325 125494479 -18788010 - MIR SINE MIR -102 160 8 2109 96 3 24 chr12 125494618 125494909 -18787580 + AluSx SINE Alu 1 285 -27 1668 153 57 3 chr12 125495357 125495639 -18786850 + AluJo SINE Alu 1 297 -15 2066 121 41 0 chr12 125495743 125495913 -18786576 - AluSx SINE Alu -10 302 114 401 0 0 20 chr12 125495913 125495963 -18786526 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2066 121 41 0 chr12 125495963 125496082 -18786407 - AluSx SINE Alu -198 114 1 2364 108 0 6 chr12 125496269 125496583 -18785906 - AluSx SINE Alu 0 312 1 183 303 45 45 chr12 125496784 125496850 -18785639 + L2 LINE L2 3186 3251 -21 386 174 0 23 chr12 125496987 125497073 -18785416 + CT-rich Low_complexity Low_complexity 1 84 0 2204 147 0 0 chr12 125497085 125497391 -18785098 - AluSx SINE Alu -6 306 1 1801 178 3 0 chr12 125497434 125497721 -18784768 - AluJo SINE Alu -22 290 3 1110 295 45 15 chr12 125497780 125498180 -18784309 - L2 LINE L2 -93 3220 2809 1678 148 90 4 chr12 125498219 125498496 -18783993 + AluJb SINE Alu 1 301 -11 24 0 0 0 chr12 125498814 125498838 -18783651 + AT_rich Low_complexity Low_complexity 1 24 0 2344 98 14 0 chr12 125499357 125499653 -18782836 + AluSx SINE Alu 1 300 -12 393 285 8 41 chr12 125499698 125499821 -18782668 + MIR SINE MIR 12 130 -132 3182 176 20 8 chr12 125499824 125500097 -18782392 + L1MB5 LINE L1 5542 5810 -364 2040 127 7 3 chr12 125500097 125500397 -18782092 + AluSx SINE Alu 1 301 -11 3182 176 20 8 chr12 125500397 125500714 -18781775 + L1MB5 LINE L1 5810 6139 -35 637 165 0 31 chr12 125500716 125500843 -18781646 - AluJb SINE Alu 0 312 190 232 239 28 28 chr12 125500950 125501021 -18781468 - MIR SINE MIR -187 75 5 4901 144 16 1 chr12 125501394 125501598 -18780891 - L1PB1 LINE L1 -155 5996 5797 180 111 0 0 chr12 125501598 125501625 -18780864 + (TA)n Simple_repeat Simple_repeat 2 28 0 4901 144 16 1 chr12 125501625 125502614 -18779875 - L1PB1 LINE L1 -354 5797 4784 1398 180 3 3 chr12 125503188 125503472 -18779017 - L1PB1 LINE L1 -1349 4797 4514 237 353 66 25 chr12 125503578 125503700 -18778789 - MIR SINE MIR -134 128 2 982 181 100 52 chr12 125504182 125504318 -18778171 - MER33 DNA MER1_type -2261 324 196 1905 151 13 31 chr12 125504318 125504636 -18777853 - AluJb SINE Alu 0 312 1 982 181 100 52 chr12 125504636 125504681 -18777808 - MER33 DNA MER1_type -2389 196 155 2498 94 0 0 chr12 125504681 125504989 -18777500 - AluSg SINE Alu 0 310 3 982 181 100 52 chr12 125504989 125505115 -18777374 - MER33 DNA MER1_type -2430 155 1 342 70 0 18 chr12 125505213 125505270 -18777219 - AluSp/q SINE Alu -3 300 245 2059 101 43 0 chr12 125505371 125505648 -18776841 - AluSq SINE Alu -24 289 1 328 363 23 29 chr12 125505837 125505905 -18776584 - MIR SINE MIR -68 194 127 1692 214 109 34 chr12 125505905 125506373 -18776116 - MLT1D LTR MaLR -2 503 1 328 363 23 29 chr12 125506373 125506475 -18776014 - MIR SINE MIR -135 127 25 298 341 78 6 chr12 125506516 125506667 -18775822 + MIR SINE MIR 35 201 -61 1648 171 16 33 chr12 125506667 125506971 -18775518 + AluJo SINE Alu 5 303 -9 298 341 78 6 chr12 125506971 125506986 -18775503 + MIR SINE MIR 201 213 -49 2465 90 3 0 chr12 125507154 125507464 -18775025 - AluSp SINE Alu -2 311 1 482 269 17 0 chr12 125507474 125507593 -18774896 - MIR SINE MIR -55 207 87 462 322 59 90 chr12 125507629 125507918 -18774571 + L2 LINE L2 2937 3216 -56 183 129 0 0 chr12 125507941 125507972 -18774517 + (TATG)n Simple_repeat Simple_repeat 4 34 0 246 283 0 0 chr12 125507973 125508026 -18774463 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 758 144 35 0 chr12 125508050 125508223 -18774266 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 557 213 24 0 chr12 125508245 125508414 -18774075 + (TGGA)n Simple_repeat Simple_repeat 3 175 0 190 193 35 0 chr12 125508433 125508490 -18773999 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 235 330 118 97 chr12 125511843 125512164 -18770325 - L2 LINE L2 -1 3271 2944 2203 170 38 11 chr12 125512166 125512642 -18769847 + L1MB7 LINE L1 5646 6134 -50 2041 128 0 21 chr12 125512649 125512976 -18769513 - AluSx SINE Alu 0 323 3 360 294 0 0 chr12 125513146 125513238 -18769251 + LTR33 LTR ERVL 68 159 -362 441 307 84 24 chr12 125513287 125513538 -18768951 + LTR33 LTR ERVL 256 521 0 1905 126 16 35 chr12 125513632 125513942 -18768547 - AluJo SINE Alu -8 304 1 555 222 0 0 chr12 125514619 125514718 -18767771 + AluJ/FLAM SINE Alu 2 100 -212 1900 144 43 10 chr12 125515200 125515499 -18766990 + AluSg SINE Alu 1 309 -1 446 144 54 24 chr12 125515888 125516055 -18766434 + GA-rich Low_complexity Low_complexity 3 174 0 23 0 0 0 chr12 125516206 125516229 -18766260 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 125516296 125516317 -18766172 + GC_rich Low_complexity Low_complexity 1 21 0 1160 270 130 11 chr12 125517619 125518139 -18764350 - L2 LINE L2 -1 3312 2731 1886 99 0 32 chr12 125518215 125518468 -18764021 + AluSx SINE Alu 1 245 -67 541 267 50 17 chr12 125518855 125519035 -18763454 - MIR3 SINE MIR -13 195 10 236 270 52 70 chr12 125519092 125519207 -18763282 + MIR SINE MIR 111 223 -39 1176 231 31 44 chr12 125519607 125519638 -18762851 - MER74B LTR ERVL -8 614 584 1661 169 44 39 chr12 125519638 125519950 -18762539 - MLT1A1 LTR MaLR 0 365 49 1954 158 7 7 chr12 125519950 125520241 -18762248 - AluJo SINE Alu -20 292 2 1661 169 44 39 chr12 125520241 125520290 -18762199 - MLT1A1 LTR MaLR -316 49 2 1176 231 31 44 chr12 125520290 125520553 -18761936 - MER74B LTR ERVL -38 584 324 1996 141 10 29 chr12 125520553 125520865 -18761624 - AluJb SINE Alu -6 306 1 1176 231 31 44 chr12 125520865 125520954 -18761535 - MER74B LTR ERVL -298 324 235 953 207 5 31 chr12 125520960 125521153 -18761336 + AluJb SINE Alu 9 196 -116 418 209 22 11 chr12 125521399 125521490 -18760999 + MER2 DNA MER2_type 1 92 -253 1925 139 4 0 chr12 125521585 125521891 -18760598 - AluJo SINE Alu 0 307 1 924 147 35 7 chr12 125521921 125522064 -18760425 + FRAM SINE Alu 1 147 -19 196 243 0 0 chr12 125522170 125522207 -18760282 - L2 LINE L2 -7 3306 3270 2377 95 3 0 chr12 125522444 125522748 -18759741 + AluSx SINE Alu 1 305 -7 1022 255 8 13 chr12 125523329 125523568 -18758921 + MIR SINE MIR 15 252 -10 2059 141 24 91 chr12 125523593 125523831 -18758658 - MLT1B LTR MaLR 0 390 190 1890 130 14 7 chr12 125523831 125524107 -18758382 - AluJo SINE Alu -26 286 9 2059 141 24 91 chr12 125524107 125524286 -18758203 - MLT1B LTR MaLR -200 190 1 9216 189 50 8 chr12 125524994 125529402 -18753087 - L1PBa LINE L1 -2115 4747 6 741 200 0 0 chr12 125529417 125529547 -18752942 - FRAM SINE Alu -6 170 41 2261 124 3 0 chr12 125529686 125529992 -18752497 - AluSx SINE Alu -5 307 1 464 296 29 23 chr12 125530099 125530271 -18752218 - MIR SINE MIR -19 243 71 1103 163 29 118 chr12 125530414 125530496 -18751993 + MER58A DNA MER1_type 1 89 -2331 1884 168 0 7 chr12 125530496 125530776 -18751713 - AluJo SINE Alu -32 280 3 1103 163 29 118 chr12 125530776 125530939 -18751550 + MER58A DNA MER1_type 89 224 0 926 299 53 15 chr12 125530947 125531288 -18751201 - MLT1L LTR MaLR -100 515 162 1563 215 47 22 chr12 125531290 125531742 -18750747 + MLT1C LTR MaLR 1 467 0 425 37 0 0 chr12 125531751 125531805 -18750684 - MADE1 DNA Mariner 0 80 27 429 254 85 18 chr12 125531811 125531976 -18750513 + MLT1L LTR MaLR 188 363 -252 518 263 67 57 chr12 125531991 125532012 -18750477 - MLT1J LTR MaLR -4 507 488 1929 131 48 0 chr12 125532012 125532302 -18750187 + AluSx SINE Alu 1 304 -8 518 263 67 57 chr12 125532302 125532336 -18750153 - MLT1J LTR MaLR -23 488 456 2513 182 10 36 chr12 125532336 125532835 -18749654 - MER66B LTR ERV1 0 486 1 518 263 67 57 chr12 125532835 125533188 -18749301 - MLT1J LTR MaLR -55 456 32 2761 161 23 38 chr12 125533302 125533421 -18749068 - MER44D DNA MER2_type -1882 605 486 3049 104 29 2 chr12 125533421 125533873 -18748616 + MER4C LTR ERV1 1 464 -1 2761 161 23 38 chr12 125533873 125534202 -18748287 - MER44D DNA MER2_type -2001 486 154 324 0 0 0 chr12 125534202 125534238 -18748251 + (TA)n Simple_repeat Simple_repeat 2 37 0 2173 134 0 0 chr12 125534238 125534537 -18747952 - AluSq SINE Alu -14 299 1 2761 161 23 38 chr12 125534537 125534644 -18747845 - MER44D DNA MER2_type -2331 156 1 1069 198 79 8 chr12 125534644 125534896 -18747593 - L1MD2 LINE L1 -30 6329 6060 * 2735 122 6 39 chr12 125534889 125535258 -18747231 - L1MD2 LINE L1 -442 5800 5447 2225 106 0 3 chr12 125535258 125535577 -18746912 - AluSx SINE Alu 0 318 1 2735 122 6 39 chr12 125535577 125535674 -18746815 - L1MD2 LINE L1 -795 5447 5348 744 194 77 6 chr12 125535676 125535846 -18746643 + MER58A DNA MER1_type 43 224 0 583 257 42 35 chr12 125535972 125536233 -18746256 + L1ME3 LINE L1 5686 5948 -214 692 228 0 0 chr12 125536417 125536531 -18745958 + FLAM_A SINE Alu 1 114 -19 216 0 0 0 chr12 125536535 125536559 -18745930 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2368 99 3 0 chr12 125536612 125536914 -18745575 - AluSx SINE Alu -7 305 3 945 109 0 109 chr12 125537547 125537667 -18744822 + MSTB2 LTR MaLR 286 379 -78 2117 122 7 3 chr12 125537667 125537970 -18744519 + AluSx SINE Alu 1 304 -8 945 109 0 109 chr12 125537970 125538042 -18744447 + MSTB2 LTR MaLR 379 457 0 510 323 6 6 chr12 125538043 125538201 -18744288 - MIR3 SINE MIR -34 174 17 320 271 0 0 chr12 125538851 125538936 -18743553 + MER117 DNA MER1_type 100 184 -13 2241 134 27 9 chr12 125539336 125539665 -18742824 - MER1B DNA MER1_type -2 335 1 639 311 49 29 chr12 125539942 125540186 -18742303 + MIR SINE MIR 2 250 -12 436 168 129 29 chr12 125540185 125540303 -18742186 + MIR SINE MIR 37 153 -62 * 607 265 116 0 chr12 125540309 125540490 -18741999 + LTR33 LTR ERVL 4 205 -316 954 153 107 16 chr12 125540491 125540893 -18741596 - MLT1D LTR MaLR -2 503 27 2238 107 0 7 chr12 125540893 125541193 -18741296 + AluSx SINE Alu 1 298 -14 787 87 29 0 chr12 125541204 125541307 -18741182 + U6 snRNA snRNA 2 107 0 1761 157 6 47 chr12 125541340 125541659 -18740830 + AluJo SINE Alu 6 311 -1 270 336 8 41 chr12 125541744 125541866 -18740623 - MIR SINE MIR -26 236 119 445 187 22 0 chr12 125541959 125542050 -18740439 + LTR33 LTR ERVL 398 490 -31 230 162 0 0 chr12 125542118 125542155 -18740334 + MIR SINE MIR 221 257 -5 260 237 226 21 chr12 125542212 125542355 -18740134 - MIR SINE MIR -63 145 16 866 209 19 63 chr12 125542971 125543239 -18739250 - MIR SINE MIR -2 260 5 423 316 70 86 chr12 125543650 125544276 -18738213 + L2 LINE L2 2325 2940 -374 234 0 0 0 chr12 125544350 125544376 -18738113 + (TG)n Simple_repeat Simple_repeat 1 26 0 1604 179 11 7 chr12 125544387 125544660 -18737829 - AluJb SINE Alu -6 306 33 227 357 12 0 chr12 125544704 125544788 -18737701 + L2 LINE L2 3183 3267 -5 1702 164 4 14 chr12 125544867 125545142 -18737347 + AluJb SINE Alu 1 272 -40 1781 174 20 3 chr12 125545256 125545561 -18736928 - AluJb SINE Alu -2 310 1 207 69 0 0 chr12 125545570 125545599 -18736890 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 723 267 28 0 chr12 125545664 125545840 -18736649 + MER58A DNA MER1_type 44 224 0 303 188 60 158 chr12 125545842 125545888 -18736601 + L1ME4a LINE L1 5989 6038 -83 2228 129 3 3 chr12 125545888 125546198 -18736291 + AluJb SINE Alu 3 312 0 303 188 60 158 chr12 125546198 125546284 -18736205 + L1ME4a LINE L1 6038 6108 -13 240 230 46 46 chr12 125546707 125546794 -18735695 + L2 LINE L2 3227 3313 0 973 198 0 0 chr12 125546802 125546974 -18735515 - AluJo SINE Alu -15 297 126 2412 101 0 0 chr12 125547005 125547312 -18735177 - AluSc SINE Alu -2 307 1 2332 108 0 3 chr12 125547538 125547834 -18734655 - AluSc SINE Alu -14 295 1 1048 82 7 7 chr12 125547834 125547969 -18734520 - AluSq/x SINE Alu -177 135 1 2761 143 15 2 chr12 125548578 125549039 -18733450 + L1MB3 LINE L1 5717 6183 0 240 35 0 0 chr12 125549638 125549667 -18732822 + (GA)n Simple_repeat Simple_repeat 2 30 0 2293 109 6 3 chr12 125549687 125549998 -18732491 + AluSq SINE Alu 1 312 -1 185 143 0 0 chr12 125550103 125550131 -18732358 - MIR SINE MIR -118 144 117 422 282 0 34 chr12 125550200 125550317 -18732172 + MIR SINE MIR 30 142 -66 2212 118 14 0 chr12 125550468 125550764 -18731725 + AluSx SINE Alu 1 300 -12 508 293 35 54 chr12 125551495 125551624 -18730865 + MIR SINE MIR 14 135 -127 2390 103 0 0 chr12 125551624 125551925 -18730564 - AluSx SINE Alu -11 301 1 508 293 35 54 chr12 125551925 125552051 -18730438 + MIR SINE MIR 135 262 0 375 316 0 0 chr12 125552087 125552182 -18730307 + MER5C DNA MER1_type 1 95 -229 586 234 35 0 chr12 125552249 125552390 -18730099 + MIR SINE MIR 33 178 -84 414 333 71 6 chr12 125552428 125552596 -18729893 - MIR SINE MIR -65 197 19 502 238 63 21 chr12 125552600 125552743 -18729746 + MIR SINE MIR 83 231 -31 324 227 0 0 chr12 125552772 125552860 -18729629 + CT-rich Low_complexity Low_complexity 3 90 0 927 143 77 6 chr12 125552912 125553080 -18729409 + MSTB2 LTR MaLR 15 194 -263 1821 92 32 0 chr12 125553182 125553432 -18729057 + L1PA10 LINE L1 5906 6163 -5 2379 110 3 0 chr12 125553451 125553761 -18728728 + AluSp SINE Alu 1 311 -2 500 182 179 21 chr12 125553761 125553916 -18728573 + MIR SINE MIR 24 214 -48 958 239 81 45 chr12 125553918 125554070 -18728419 + L1MC4 LINE L1 7631 7776 -266 2324 101 3 13 chr12 125554070 125554376 -18728113 + AluSx SINE Alu 1 303 -9 958 239 81 45 chr12 125554376 125554620 -18727869 + L1MC4 LINE L1 7776 8041 -1 1775 123 22 74 chr12 125554690 125555014 -18727475 + AluJo SINE Alu 3 309 -3 291 218 0 0 chr12 125555015 125555070 -18727419 + MIR SINE MIR 207 261 -1 516 264 55 60 chr12 125555262 125555497 -18726992 - L2 LINE L2 -213 3059 2826 198 0 0 0 chr12 125555981 125556003 -18726486 + (TC)n Simple_repeat Simple_repeat 2 23 0 1985 154 3 7 chr12 125556018 125556317 -18726172 - AluJo SINE Alu -14 298 1 188 286 357 0 chr12 125556317 125556401 -18726088 + L2 LINE L2 3149 3262 -10 459 218 38 8 chr12 125556583 125556716 -18725773 - Charlie1 DNA MER1_type -5 2756 2620 2112 109 0 21 chr12 125556743 125557059 -18725430 + AluSg SINE Alu 1 310 0 1180 150 48 0 chr12 125557065 125557272 -18725217 - Charlie1 DNA MER1_type -2544 217 1 236 336 131 0 chr12 125557289 125557396 -18725093 + L2 LINE L2 3134 3254 -18 220 196 71 0 chr12 125557447 125557503 -18724986 - L2 LINE L2 -61 3211 3152 1996 154 3 3 chr12 125557762 125558067 -18724422 - AluJo SINE Alu -7 305 1 2098 129 0 0 chr12 125558405 125558721 -18723768 + AluSx SINE Alu 2 317 0 255 286 22 11 chr12 125558797 125558888 -18723601 - MIR SINE MIR -126 136 45 1042 189 63 143 chr12 125558888 125559287 -18723202 + MLT1E LTR MaLR 1 430 -163 267 31 0 0 chr12 125559287 125559319 -18723170 + (TC)n Simple_repeat Simple_repeat 2 33 0 1042 189 63 143 chr12 125559319 125559330 -18723159 + MLT1E LTR MaLR 430 440 -153 1059 94 0 0 chr12 125559330 125559510 -18722979 + (TA)n Simple_repeat Simple_repeat 1 180 0 1042 189 63 143 chr12 125559510 125559524 -18722965 + MLT1E LTR MaLR 440 454 -139 2194 118 0 0 chr12 125559524 125559812 -18722677 - AluSx SINE Alu -24 288 1 1947 163 0 3 chr12 125559813 125560108 -18722381 - AluJo SINE Alu -18 294 1 1042 189 63 143 chr12 125560108 125560214 -18722275 + MLT1E LTR MaLR 453 592 -1 216 67 0 0 chr12 125560334 125560364 -18722125 + (CA)n Simple_repeat Simple_repeat 2 31 0 316 322 58 40 chr12 125560842 125561016 -18721473 + MIR SINE MIR 8 184 -78 249 139 0 0 chr12 125561475 125561518 -18720971 + (TCCC)n Simple_repeat Simple_repeat 1 43 0 216 246 0 0 chr12 125561503 125561572 -18720917 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 * 233 329 0 0 chr12 125561575 125561648 -18720841 + (CCCA)n Simple_repeat Simple_repeat 1 73 0 287 200 0 14 chr12 125561659 125561729 -18720760 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 2017 152 10 0 chr12 125561994 125562284 -18720205 + AluJo SINE Alu 1 293 -19 215 56 56 0 chr12 125562285 125562321 -18720168 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 * 398 212 15 15 chr12 125562319 125562456 -18720033 + GA-rich Low_complexity Low_complexity 4 140 0 1038 154 6 12 chr12 125562608 125562806 -18719683 - FRAM SINE Alu 0 176 1 1806 177 3 13 chr12 125562872 125563171 -18719318 - AluJo SINE Alu -16 296 1 365 333 21 32 chr12 125563736 125563922 -18718567 + L2 LINE L2 2876 3059 -254 991 208 187 75 chr12 125564008 125564475 -18718014 + MLT1G1 LTR MaLR 1 537 -58 1326 184 110 7 chr12 125564475 125564784 -18717705 - MER2 DNA MER2_type -2 342 2 991 208 187 75 chr12 125564784 125564851 -18717638 + MLT1G1 LTR MaLR 537 595 0 469 285 88 7 chr12 125564852 125564989 -18717500 + L2 LINE L2 3165 3312 -1 2323 112 0 13 chr12 125565030 125565342 -18717147 - AluSx SINE Alu -4 308 1 251 234 0 65 chr12 125565360 125565437 -18717052 - L2 LINE L2 -4 3268 3197 212 200 17 17 chr12 125566113 125566173 -18716316 + CT-rich Low_complexity Low_complexity 2 61 0 1890 143 3 20 chr12 125566560 125566853 -18715636 - AluJb SINE Alu -24 288 1 292 309 159 0 chr12 125566857 125566983 -18715506 - MIR SINE MIR -48 214 69 327 205 73 119 chr12 125567131 125567282 -18715207 - MIR SINE MIR 0 262 119 2319 80 0 33 chr12 125567414 125567714 -18714775 - AluSx SINE Alu -22 290 1 22 35 0 0 chr12 125569326 125569355 -18713134 + GC_rich Low_complexity Low_complexity 1 29 0 204 152 30 106 chr12 125569494 125569560 -18712929 + L2 LINE L2 3232 3292 -21 187 214 24 0 chr12 125569660 125569702 -18712787 + L2 LINE L2 3214 3256 -16 204 186 0 47 chr12 125570340 125570383 -18712106 + polypurine Low_complexity Low_complexity 4 44 0 31 44 0 0 chr12 125570613 125570658 -18711831 + GC_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr12 125570763 125570786 -18711703 + GC_rich Low_complexity Low_complexity 1 23 0 200 200 35 59 chr12 125570815 125570900 -18711589 + C-rich Low_complexity Low_complexity 1 83 0 584 294 51 31 chr12 125572193 125572448 -18710041 - MIR SINE MIR -1 261 2 301 273 127 0 chr12 125572452 125572562 -18709927 + MIR SINE MIR 133 256 -6 389 291 9 0 chr12 125572861 125572971 -18709518 - MER3 DNA MER1_type -87 122 12 288 358 81 0 chr12 125573087 125573210 -18709279 + MIR3 SINE MIR 3 135 -73 2320 116 0 0 chr12 125573222 125573525 -18708964 - AluSx SINE Alu -9 303 1 918 188 21 16 chr12 125574240 125574426 -18708063 + MER20 DNA MER1_type 33 219 0 1276 148 30 34 chr12 125574495 125574594 -18707895 + MLT1B LTR MaLR 1 99 -291 1984 109 76 0 chr12 125574594 125574870 -18707619 + AluSx SINE Alu 1 297 -15 1276 148 30 34 chr12 125574870 125574897 -18707592 + MLT1B LTR MaLR 99 125 -265 2446 176 27 33 chr12 125574897 125575386 -18707103 - MER66B LTR ERV1 0 486 1 1276 148 30 34 chr12 125575386 125575522 -18706967 + MLT1B LTR MaLR 125 263 -127 278 111 0 0 chr12 125575512 125575557 -18706932 + Alu SINE Alu 259 303 -5 * 343 250 68 45 chr12 125575568 125575700 -18706789 - L1MC4a LINE L1 -1844 5964 5830 750 170 18 64 chr12 125575707 125575878 -18706611 + MIR SINE MIR 9 171 -91 1865 139 32 29 chr12 125575878 125576188 -18706301 - AluJb SINE Alu -1 311 1 2083 216 66 22 chr12 125576208 125576750 -18705739 - MLT1E2 LTR MaLR 0 626 61 298 108 0 226 chr12 125576971 125577064 -18705425 + AluS SINE Alu 2 73 -229 2113 175 29 5 chr12 125577153 125577531 -18704958 + MSTB LTR MaLR 1 387 -39 1885 122 3 79 chr12 125577531 125577667 -18704822 + AluSx SINE Alu 1 146 -185 2130 119 3 7 chr12 125577667 125577962 -18704527 + AluSx SINE Alu 1 294 -18 1885 122 3 79 chr12 125577962 125578179 -18704310 + AluSx SINE Alu 146 331 0 274 286 71 0 chr12 125578180 125578278 -18704211 - MIR SINE MIR -119 143 39 555 235 90 36 chr12 125578337 125578503 -18703986 - MIR SINE MIR -41 221 47 516 267 119 28 chr12 125578744 125578920 -18703569 + MIR SINE MIR 20 211 -51 2167 132 7 0 chr12 125579126 125579436 -18703053 - AluSx SINE Alu 0 312 1 555 181 128 27 chr12 125579459 125579608 -18702881 - MER103 DNA DNA -1 165 2 936 209 85 0 chr12 125579647 125579848 -18702641 + MER58A DNA MER1_type 1 218 -6 976 216 54 97 chr12 125579860 125580119 -18702370 + MLT1D LTR MaLR 217 502 -3 1997 158 0 0 chr12 125580128 125580432 -18702057 + AluJb SINE Alu 1 304 -8 27 29 0 0 chr12 125580667 125580701 -18701788 + AT_rich Low_complexity Low_complexity 1 34 0 400 237 112 7 chr12 125580854 125581006 -18701483 - MLT1J2 LTR MaLR 0 450 283 198 286 0 0 chr12 125581048 125581090 -18701399 + MER5B DNA MER1_type 7 48 -130 542 260 73 24 chr12 125581107 125581353 -18701136 - MLT1J2 LTR MaLR -192 258 1 609 295 68 104 chr12 125581370 125581551 -18700938 - L1ME2 LINE L1 -162 6002 5816 1025 179 28 0 chr12 125581551 125581730 -18700759 + MER5A DNA MER1_type 4 187 -2 609 295 68 104 chr12 125581730 125582004 -18700485 - L1ME2 LINE L1 -348 5816 5564 1805 186 21 0 chr12 125582004 125582295 -18700194 + AluJb SINE Alu 1 297 -15 609 295 68 104 chr12 125582295 125582336 -18700153 - L1ME2 LINE L1 -600 5564 5523 1946 176 10 47 chr12 125582622 125582780 -18699709 - MLT2C1 LTR ERVL 0 397 235 1981 138 3 0 chr12 125582780 125583089 -18699400 - AluSx SINE Alu 0 312 1 1946 176 10 47 chr12 125583089 125583338 -18699151 - MLT2C1 LTR ERVL -162 235 5 2053 117 46 0 chr12 125583414 125583697 -18698792 + AluSx SINE Alu 1 296 -16 318 80 0 0 chr12 125583697 125583747 -18698742 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1444 159 92 35 chr12 125583796 125584079 -18698410 + AluJo SINE Alu 1 299 -13 370 269 77 0 chr12 125584101 125584257 -18698232 - L1M4 LINE L1 -2252 3894 3727 598 301 48 0 chr12 125584285 125584491 -18697998 - MLT1J LTR MaLR -290 221 6 386 255 19 28 chr12 125584506 125584612 -18697877 - MIR SINE MIR -61 147 43 812 235 47 0 chr12 125584705 125584875 -18697614 - MIR SINE MIR -32 230 53 1715 184 10 14 chr12 125585128 125585284 -18697205 - AluJo SINE Alu -20 292 136 2037 101 63 3 chr12 125585284 125585570 -18696919 - AluSq SINE Alu -10 303 1 1715 184 10 14 chr12 125585570 125585706 -18696783 - AluJo SINE Alu -176 136 1 333 0 0 0 chr12 125586504 125586541 -18695948 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 2200 116 0 7 chr12 125586992 125587286 -18695203 - AluSq SINE Alu -16 297 6 181 279 115 33 chr12 125587298 125587359 -18695130 - MIR SINE MIR -58 150 85 431 324 139 24 chr12 125587373 125587703 -18694786 - L2 LINE L2 0 3272 2905 575 267 7 111 chr12 125588281 125588430 -18694059 + MIR SINE MIR 10 120 -142 603 173 7 86 chr12 125588430 125588569 -18693920 + FLAM_A SINE Alu 2 129 -4 575 267 7 111 chr12 125588569 125588689 -18693800 + MIR SINE MIR 120 251 -11 2326 113 0 0 chr12 125588690 125588991 -18693498 - AluSx SINE Alu -10 302 2 204 182 0 0 chr12 125588992 125589036 -18693453 + (TG)n Simple_repeat Simple_repeat 1 44 0 308 261 121 42 chr12 125589239 125589404 -18693085 + MIR SINE MIR 42 219 -43 197 286 100 0 chr12 125589540 125589610 -18692879 + L2 LINE L2 3231 3307 -6 2286 110 3 0 chr12 125589851 125590150 -18692339 - AluSx SINE Alu -12 300 1 210 341 24 0 chr12 125590155 125590237 -18692252 - MIR SINE MIR -114 148 65 2041 140 0 19 chr12 125590260 125590568 -18691921 - AluJb SINE Alu 0 312 11 662 295 67 59 chr12 125590684 125591040 -18691449 + L2 LINE L2 2914 3272 0 433 281 143 46 chr12 125591121 125591317 -18691172 + MIR SINE MIR 27 241 -21 184 304 0 0 chr12 125591464 125591520 -18690969 - MIR SINE MIR -22 240 185 * 984 266 158 20 chr12 125591516 125591922 -18690567 - L2 LINE L2 -1 3312 2851 236 191 0 0 chr12 125591947 125591989 -18690500 + MER45A DNA AcHobo 54 95 -83 1325 125 0 25 chr12 125591995 125592195 -18690294 - AluSg/x SINE Alu -17 295 101 1125 122 0 6 chr12 125592196 125592352 -18690137 - AluSx SINE Alu -157 155 1 409 171 40 0 chr12 125592352 125592428 -18690061 + MER45A DNA AcHobo 99 177 -1 276 261 17 68 chr12 125592558 125592599 -18689890 - MIR SINE MIR -61 147 105 2631 178 24 24 chr12 125592599 125593104 -18689385 - MLT1D LTR MaLR 0 505 1 276 261 17 68 chr12 125593104 125593243 -18689246 - MIR SINE MIR -103 105 12 565 231 35 59 chr12 125593902 125594071 -18688418 + MIR SINE MIR 14 178 -84 2162 147 0 0 chr12 125594317 125594629 -18687860 - AluSx SINE Alu 0 312 1 770 154 0 31 chr12 125594631 125594761 -18687728 - AluJo/FLAM SINE Alu -181 131 6 335 261 190 67 chr12 125595126 125595394 -18687095 - L2 LINE L2 -3 3310 3010 1328 118 14 36 chr12 125595433 125595653 -18686836 + AluJo SINE Alu 84 298 -14 186 255 0 0 chr12 125595713 125595760 -18686729 + L2 LINE L2 3209 3255 -17 344 189 267 10 chr12 125596013 125596130 -18686359 + MIR SINE MIR 13 143 -65 216 341 23 0 chr12 125596306 125596394 -18686095 + MIR SINE MIR 51 140 -122 26 50 0 0 chr12 125596692 125596732 -18685757 + GC_rich Low_complexity Low_complexity 1 40 0 274 240 177 0 chr12 125597061 125597157 -18685332 - L1ME3 LINE L1 -1 6161 6049 1332 151 17 95 chr12 125597164 125597402 -18685087 - MER33 DNA MER1_type -2265 320 65 198 0 0 0 chr12 125597402 125597424 -18685065 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1611 152 44 4 chr12 125597428 125597698 -18684791 - AluJb SINE Alu -31 281 1 1332 151 17 95 chr12 125597698 125597834 -18684655 - MER33 DNA MER1_type -2523 62 1 413 302 63 19 chr12 125597998 125598157 -18684332 + MIR SINE MIR 10 175 -87 202 259 0 37 chr12 125598300 125598354 -18684135 + MIR SINE MIR 111 162 -100 2170 106 3 58 chr12 125599121 125599451 -18683038 - AluSx SINE Alu 0 312 1 213 65 0 0 chr12 125599647 125599678 -18682811 + (TC)n Simple_repeat Simple_repeat 2 32 0 564 226 0 0 chr12 125599746 125599860 -18682629 + MIR SINE MIR 63 175 -57 180 176 0 0 chr12 125599898 125599932 -18682557 + (CCA)n Simple_repeat Simple_repeat 2 35 0 2254 110 16 7 chr12 125600036 125600345 -18682144 + AluSx SINE Alu 1 312 0 452 270 34 14 chr12 125600361 125600509 -18681980 + MLT1K LTR MaLR 422 572 -16 313 250 148 31 chr12 125600558 125600686 -18681803 - MIR3 SINE MIR -50 158 16 2037 153 3 0 chr12 125600718 125601018 -18681471 + AluSx SINE Alu 1 301 -11 1183 242 20 0 chr12 125601103 125601347 -18681142 - MIR SINE MIR -6 256 8 216 265 0 0 chr12 125601632 125601681 -18680808 - L2 LINE L2 -2 3311 3263 637 262 143 28 chr12 125601684 125601936 -18680553 - MLT1J LTR MaLR -2 509 229 915 215 67 9 chr12 125601987 125602210 -18680279 - MLT1A1 LTR MaLR -129 236 1 358 200 261 42 chr12 125602259 125602424 -18680065 - MLT1G LTR MaLR -46 533 309 319 250 72 33 chr12 125602525 125602677 -18679812 - MLT1G LTR MaLR -282 313 156 382 231 123 99 chr12 125602784 125602853 -18679636 - MIR SINE MIR -12 250 184 672 228 88 16 chr12 125602853 125603046 -18679443 - MER63A DNA MER1_type -3 207 1 382 231 123 99 chr12 125603046 125603219 -18679270 - MIR SINE MIR -78 184 2 387 246 88 147 chr12 125604104 125604255 -18678234 - L2 LINE L2 -21 3251 3093 2189 117 13 3 chr12 125604255 125604564 -18677925 + AluSx SINE Alu 1 312 0 387 246 88 147 chr12 125604564 125604786 -18677703 - L2 LINE L2 -179 3093 2900 1179 224 5 0 chr12 125604859 125605078 -18677411 + MER58A DNA MER1_type 5 224 0 254 361 14 28 chr12 125605128 125605272 -18677217 - MIR SINE MIR -119 143 2 713 210 147 0 chr12 125605547 125605704 -18676785 - MER5A DNA MER1_type -1 188 9 378 324 62 14 chr12 125605805 125605950 -18676539 + L2 LINE L2 3103 3254 -18 279 246 0 24 chr12 125605950 125606117 -18676372 + GA-rich Low_complexity Low_complexity 2 164 0 656 172 0 55 chr12 125606173 125606301 -18676188 + FLAM_C SINE Alu 1 121 -12 1551 118 68 5 chr12 125606973 125607193 -18675296 - AluSx SINE Alu -76 236 3 838 228 28 9 chr12 125607375 125607586 -18674903 - L1MD3 LINE L1 -10 7985 7771 888 103 0 24 chr12 125607587 125607713 -18674776 - FRAM SINE Alu 0 176 54 2135 91 12 56 chr12 125607842 125608161 -18674328 + AluSx SINE Alu 1 305 -7 405 257 38 0 chr12 125608225 125608330 -18674159 + MIR SINE MIR 118 226 -36 259 176 147 15 chr12 125608358 125608426 -18674063 + MIR SINE MIR 86 162 -100 2126 241 17 43 chr12 125608429 125608890 -18673599 + L1ME2 LINE L1 5583 6055 -279 198 0 0 0 chr12 125608890 125608912 -18673577 + (TA)n Simple_repeat Simple_repeat 2 23 0 1973 165 0 10 chr12 125608912 125609215 -18673274 - AluJb SINE Alu -12 300 1 2126 241 17 43 chr12 125609215 125609354 -18673135 + L1ME2 LINE L1 6053 6330 -4 459 307 42 14 chr12 125609390 125609605 -18672884 + L1ME LINE L1 5600 5820 -301 1224 206 19 70 chr12 125609612 125609850 -18672639 + L1MD3 LINE L1 7408 7622 -373 906 150 0 0 chr12 125609850 125609983 -18672506 - FLAM_C SINE Alu 0 133 1 1224 206 19 70 chr12 125609983 125610118 -18672371 + L1MD3 LINE L1 7622 7762 -233 2095 125 19 29 chr12 125610126 125610438 -18672051 - AluSx SINE Alu -3 309 1 1957 117 64 0 chr12 125610652 125610933 -18671556 - AluSx SINE Alu -8 304 6 749 254 98 21 chr12 125611325 125611561 -18670928 + MIR SINE MIR 5 258 -4 326 316 26 0 chr12 125612138 125612255 -18670234 + L1ME LINE L1 5536 5655 -515 859 178 103 0 chr12 125612256 125612430 -18670059 + MER20 DNA MER1_type 1 192 -27 2351 138 8 94 chr12 125612430 125612485 -18670004 + MER65A LTR ERV1 1 59 -386 2360 113 3 0 chr12 125612485 125612794 -18669695 + AluSx SINE Alu 1 310 -2 2351 138 8 94 chr12 125612794 125612807 -18669682 + MER65A LTR ERV1 59 72 -373 1240 116 0 0 chr12 125612807 125612988 -18669501 + L1PA13 LINE L1 5983 6163 0 2351 138 8 94 chr12 125612988 125613405 -18669084 + MER65A LTR ERV1 72 445 0 2370 88 3 0 chr12 125613427 125613721 -18668768 + AluSp SINE Alu 1 295 -18 21 0 0 0 chr12 125614428 125614449 -18668040 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr12 125614755 125614775 -18667714 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1728 137 36 96 chr12 125614776 125614824 -18667665 - L1MB5 LINE L1 -7 6167 6118 2198 129 3 3 chr12 125614824 125615135 -18667354 - AluSx SINE Alu -1 311 1 1728 137 36 96 chr12 125615135 125615473 -18667016 - L1MB5 LINE L1 -56 6118 5804 628 186 27 117 chr12 125615527 125615567 -18666922 - MIR SINE MIR -78 184 142 2328 107 0 0 chr12 125615567 125615866 -18666623 - AluSx SINE Alu -13 299 1 628 186 27 117 chr12 125615866 125616013 -18666476 - MIR SINE MIR -120 142 14 541 261 33 0 chr12 125616309 125616462 -18666027 + MER117 DNA MER1_type 37 194 -3 527 183 92 0 chr12 125617107 125617227 -18665262 + MIR SINE MIR 16 146 -116 384 212 15 106 chr12 125617298 125617359 -18665130 + MIR SINE MIR 92 136 -126 2266 103 0 17 chr12 125617359 125617660 -18664829 + AluSx SINE Alu 1 296 -16 384 212 15 106 chr12 125617660 125617730 -18664759 + MIR SINE MIR 136 211 -51 198 333 21 32 chr12 125617976 125618069 -18664420 - L2 LINE L2 -84 3188 3097 1480 171 3 37 chr12 125618352 125618651 -18663838 + L1MD3 LINE L1 7707 7995 0 204 261 0 0 chr12 125618687 125618733 -18663756 + (TA)n Simple_repeat Simple_repeat 2 47 0 585 222 150 0 chr12 125618778 125618958 -18663531 - L1MC4a LINE L1 -1911 5897 5691 409 283 42 0 chr12 125618959 125619079 -18663410 + MIR SINE MIR 137 261 -1 1011 248 51 27 chr12 125619117 125619411 -18663078 - L1MC4a LINE L1 -2158 5650 5350 201 74 0 0 chr12 125619725 125619752 -18662737 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 249 361 0 24 chr12 125619912 125619995 -18662494 + L2 LINE L2 3134 3214 -58 362 92 0 15 chr12 125620010 125620075 -18662414 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 1092 294 56 24 chr12 125620230 125620702 -18661787 + L2 LINE L2 2631 3087 -226 197 33 33 0 chr12 125620702 125620732 -18661757 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2081 96 7 4 chr12 125620734 125621014 -18661475 - AluSx SINE Alu -31 281 1 1092 294 56 24 chr12 125621014 125621175 -18661314 + L2 LINE L2 3087 3293 -20 221 186 0 23 chr12 125621664 125621707 -18660782 + CT-rich Low_complexity Low_complexity 2 43 0 225 94 0 0 chr12 125621709 125621741 -18660748 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 2272 114 0 3 chr12 125621741 125622038 -18660451 - AluSx SINE Alu -14 298 3 1955 130 3 53 chr12 125622044 125622366 -18660123 - AluJo SINE Alu -6 306 1 2413 104 0 16 chr12 125622511 125622828 -18659661 - AluSx SINE Alu 0 312 1 558 280 11 37 chr12 125622921 125623110 -18659379 - MIR SINE MIR -51 211 28 593 206 0 69 chr12 125623129 125623260 -18659229 - FLAM_A SINE Alu -11 122 1 2106 129 0 19 chr12 125623352 125623661 -18658828 + AluSx SINE Alu 1 303 -9 255 125 0 0 chr12 125623661 125623701 -18658788 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 235 206 196 31 chr12 125624596 125624693 -18657796 + MIR3 SINE MIR 4 116 -92 718 214 117 19 chr12 125625622 125625828 -18656661 - LTR16A1 LTR ERVL 0 457 232 2086 120 23 10 chr12 125626218 125626519 -18655970 + AluJo SINE Alu 1 305 -7 1000 252 124 82 chr12 125626519 125626635 -18655854 - MLT1K LTR MaLR -40 548 438 1822 125 75 11 chr12 125626635 125626743 -18655746 + AluSx SINE Alu 1 101 -211 513 0 0 0 chr12 125626743 125626800 -18655689 + (CA)n Simple_repeat Simple_repeat 2 58 0 1822 125 75 11 chr12 125626800 125626972 -18655517 + AluSx SINE Alu 101 299 -13 1000 252 124 82 chr12 125626972 125627316 -18655173 - MLT1K LTR MaLR -150 438 69 2310 102 0 0 chr12 125627350 125627643 -18654846 + AluSq SINE Alu 1 293 -20 701 306 11 26 chr12 125628611 125628876 -18653613 + MIR SINE MIR 2 262 0 282 152 0 0 chr12 125629141 125629187 -18653302 + L2 LINE L2 3268 3313 0 2354 117 0 0 chr12 125629667 125629975 -18652514 + AluSx SINE Alu 1 308 -4 183 100 0 0 chr12 125630013 125630043 -18652446 + (A)n Simple_repeat Simple_repeat 1 30 0 857 166 18 0 chr12 125630509 125630672 -18651817 - L1 LINE L1 -2144 4002 3837 2113 104 21 0 chr12 125631064 125631353 -18651136 - AluSx SINE Alu -17 295 1 337 270 22 0 chr12 125631538 125631627 -18650862 - MIR3 SINE MIR -6 202 112 2596 58 0 6 chr12 125631805 125632118 -18650371 + AluY SINE Alu 1 311 0 2257 83 0 36 chr12 125632149 125632450 -18650039 + AluSx SINE Alu 1 290 -22 310 192 80 126 chr12 125632582 125632733 -18649756 + MIR SINE MIR 119 262 0 1903 148 37 11 chr12 125633031 125633409 -18649080 - L1MB7 LINE L1 -151 6033 5646 5400 115 63 16 chr12 125633895 125635113 -18647376 + L1MA8 LINE L1 5010 6289 -2 2002 149 0 0 chr12 125635146 125635442 -18647047 + AluSx SINE Alu 3 298 -14 2116 138 0 0 chr12 125635569 125635866 -18646623 + AluSx SINE Alu 1 297 -15 271 247 0 91 chr12 125636070 125636147 -18646342 - L2 LINE L2 -23 3249 3180 1796 145 19 38 chr12 125636336 125636653 -18645836 - AluJb SINE Alu -1 311 1 1752 233 74 2 chr12 125636673 125637119 -18645370 - MLT1E2 LTR MaLR 0 626 149 216 304 0 14 chr12 125638619 125638688 -18643801 + CT-rich Low_complexity Low_complexity 3 70 0 1795 124 15 8 chr12 125639423 125639689 -18642800 - AluSp SINE Alu -45 268 1 1792 158 34 14 chr12 125639689 125639986 -18642503 - AluJb SINE Alu -9 303 1 1828 163 0 7 chr12 125640012 125640294 -18642195 - AluJo SINE Alu -32 280 1 2126 137 33 100 chr12 125640513 125640973 -18641516 + Tigger2a DNA MER2_type 6 434 0 267 229 73 46 chr12 125641122 125641231 -18641258 - MER5A DNA MER1_type -56 133 22 2686 234 28 28 chr12 125642819 125643527 -18638962 - L1M4 LINE L1 -5818 724 17 1611 176 0 55 chr12 125644375 125644705 -18637784 - AluJb SINE Alu 0 312 1 2031 129 0 17 chr12 125644878 125645165 -18637324 - AluSx SINE Alu -30 282 1 580 288 15 35 chr12 125645258 125645456 -18637033 - MIR SINE MIR -51 211 18 237 231 0 120 chr12 125645465 125645582 -18636907 - AluSp SINE Alu -180 123 21 590 259 0 8 chr12 125645867 125645998 -18636491 + FLAM_A SINE Alu 1 130 -3 2292 115 0 0 chr12 125646059 125646363 -18636126 - AluSx SINE Alu -7 305 2 204 182 0 0 chr12 125646364 125646408 -18636081 + (TG)n Simple_repeat Simple_repeat 1 44 0 308 261 121 42 chr12 125646611 125646776 -18635713 + MIR SINE MIR 42 219 -43 1903 236 184 14 chr12 125647347 125648079 -18634410 + L2 LINE L2 1787 2643 -671 270 243 29 0 chr12 125648444 125648514 -18633975 - L1ME LINE L1 -450 5671 5600 204 350 75 5 chr12 125648645 125648831 -18633658 + L2 LINE L2 1803 2001 -1313 592 165 0 10 chr12 125649506 125649609 -18632880 + AluY SINE Alu 210 311 0 565 231 35 59 chr12 125649858 125650027 -18632462 - MIR SINE MIR -84 178 14 305 236 89 49 chr12 125650960 125651016 -18631473 - MIR SINE MIR -1 261 209 1647 141 21 74 chr12 125651016 125651342 -18631147 - AluJo SINE Alu -3 309 1 305 236 89 49 chr12 125651342 125651408 -18631081 - MIR SINE MIR -53 209 134 414 200 32 0 chr12 125652406 125652501 -18629988 + MER117 DNA MER1_type 1 98 -99 301 292 34 91 chr12 125652598 125652807 -18629682 + L2 LINE L2 2981 3177 -95 293 194 194 9 chr12 125653095 125653203 -18629286 + MIR SINE MIR 124 251 -11 216 293 12 24 chr12 125654027 125654109 -18628380 - L2 LINE L2 -1 3312 3232 318 121 35 0 chr12 125654210 125654268 -18628221 - AluS SINE Alu -241 60 1 491 320 95 63 chr12 125654301 125654542 -18627947 + L1ME3A LINE L1 5594 5851 -319 1025 179 28 0 chr12 125654542 125654721 -18627768 - MER5A DNA MER1_type -2 187 4 491 320 95 63 chr12 125654721 125654826 -18627663 + L1ME3A LINE L1 5851 5951 -219 1243 166 204 11 chr12 125655511 125655795 -18626694 + MER44D DNA MER2_type 1 609 0 929 273 211 23 chr12 125655840 125656323 -18626166 + MLT1K LTR MaLR 7 580 -8 220 196 71 0 chr12 125659843 125659899 -18622590 + L2 LINE L2 3152 3211 -61 236 336 131 0 chr12 125659950 125660057 -18622432 - L2 LINE L2 -18 3254 3134 1180 150 48 0 chr12 125660074 125660281 -18622208 + Charlie1 DNA MER1_type 1 217 -2544 523 188 27 97 chr12 125660286 125660472 -18622017 - AluSg/x SINE Alu -3 307 135 2331 41 24 0 chr12 125711257 125711552 -18570937 - AluY SINE Alu -9 302 1 853 208 11 0 chr12 125711709 125711892 -18570597 - MER5A DNA MER1_type 0 189 5 457 333 118 18 chr12 125711898 125712126 -18570363 + MIR SINE MIR 12 262 0 295 311 37 52 chr12 125712214 125712349 -18570140 + MIR SINE MIR 58 190 -72 215 220 0 0 chr12 125714543 125714593 -18567896 - L2 LINE L2 -2 3311 3262 332 303 71 42 chr12 125714847 125715226 -18567263 - L1MEc LINE L1 -4646 1664 1275 304 298 107 8 chr12 125715337 125715468 -18567021 - L1MEc LINE L1 -5022 1097 954 808 292 117 56 chr12 125715470 125716340 -18566149 - L1MEc LINE L1 -5191 928 6 21 36 0 0 chr12 125718114 125718142 -18564347 + AT_rich Low_complexity Low_complexity 1 28 0 310 364 77 0 chr12 125718245 125718440 -18564049 + L1ME4a LINE L1 5911 6120 -1 1721 90 128 4 chr12 125720096 125720362 -18562127 + AluSx SINE Alu 1 299 -13 1462 144 3 98 chr12 125720367 125720694 -18561795 + AluJo SINE Alu 1 296 -16 288 222 56 28 chr12 125720818 125720890 -18561599 + L2 LINE L2 3199 3272 0 201 175 0 0 chr12 125722380 125722420 -18560069 + T-rich Low_complexity Low_complexity 1 40 0 988 134 35 29 chr12 125723234 125723406 -18559083 - MER2 DNA MER2_type -172 173 1 1688 89 12 12 chr12 125724304 125724551 -18557938 + AluSx SINE Alu 64 310 -2 276 201 153 62 chr12 125724868 125725012 -18557477 + MER104 DNA Tc2 6 162 -18 221 0 35 0 chr12 125725015 125725044 -18557445 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1520 252 56 61 chr12 125725186 125725960 -18556529 - L1ME LINE L1 -4869 1211 472 421 296 81 65 chr12 125726015 125726322 -18556167 - L1ME LINE L1 -5575 495 184 371 270 60 72 chr12 125726373 125726679 -18555810 - L1ME LINE L1 -5777 293 6 3417 179 50 8 chr12 125726951 125727615 -18554874 - L1MB8 LINE L1 -3 6175 5484 2875 197 13 37 chr12 125727624 125728356 -18554133 - L1MB8 LINE L1 -743 5403 4718 24 32 0 0 chr12 125728928 125728959 -18553530 + AT_rich Low_complexity Low_complexity 1 31 0 330 318 27 0 chr12 125732616 125732726 -18549763 - L1MCa LINE L1 -4892 1534 1422 420 278 168 10 chr12 125732727 125733018 -18549471 - L1MCa LINE L1 -4862 1554 1218 364 241 213 7 chr12 125733138 125733279 -18549210 - L1MCa LINE L1 -5918 498 329 776 252 85 58 chr12 125733351 125733728 -18548761 - L1MC/D LINE L1 -2168 5640 5254 455 353 88 22 chr12 125734304 125734662 -18547827 - L1MC/D LINE L1 -2390 3756 3372 1709 166 10 13 chr12 125734745 125735052 -18547437 + AluJo SINE Alu 1 306 -6 377 234 46 28 chr12 125735380 125735527 -18546962 - HAL1b LINE L1 -739 1634 470 226 286 0 48 chr12 125736864 125736927 -18545562 - MLT-int LTR MaLR -896 839 780 655 184 125 0 chr12 125737577 125737713 -18544776 + FRAM SINE Alu 1 153 -13 205 327 59 0 chr12 125739592 125739693 -18542796 + MIR3 SINE MIR 81 187 -21 320 337 122 60 chr12 125741338 125741837 -18540652 + L1M4 LINE L1 2453 2982 -3164 1901 136 3 23 chr12 125741979 125742280 -18540209 - AluSx SINE Alu -17 295 1 416 179 0 24 chr12 125743717 125743801 -18538688 - MER6 DNA MER2_type 0 865 784 2188 96 0 0 chr12 125743801 125744094 -18538395 + AluSx SINE Alu 1 293 -19 3955 169 63 9 chr12 125744096 125744876 -18537613 - MER6 DNA MER2_type -43 822 1 2128 80 35 0 chr12 125748105 125748394 -18534095 - AluSx SINE Alu -3 309 11 1585 148 0 11 chr12 125749349 125749643 -18532846 + AluJb SINE Alu 31 321 0 1787 167 7 0 chr12 125750904 125751203 -18531286 + AluJb SINE Alu 1 301 -11 2155 109 0 0 chr12 125753709 125754002 -18528487 - AluSx SINE Alu -19 293 1 269 387 12 12 chr12 125755112 125755226 -18527263 + L1MC/D LINE L1 5700 5816 -1992 970 55 86 0 chr12 125755226 125755354 -18527135 - MER85 DNA T2_type 0 139 1 269 387 12 12 chr12 125755354 125755407 -18527082 + L1MC/D LINE L1 5815 5867 -1941 1788 101 4 36 chr12 125755811 125756119 -18526370 - AluSx SINE Alu 0 315 17 185 281 16 16 chr12 125756157 125756221 -18526268 - MIR SINE MIR -81 181 118 1536 162 0 83 chr12 125756333 125756672 -18525817 + AluJo SINE Alu 1 311 -1 2158 117 7 0 chr12 125756986 125757295 -18525194 + AluSx SINE Alu 1 311 -1 219 214 0 36 chr12 125758343 125758399 -18524090 + MIR3 SINE MIR 110 163 -45 554 194 15 0 chr12 125759328 125759460 -18523029 + MIR SINE MIR 36 169 -63 1967 136 3 13 chr12 125759784 125760093 -18522396 - AluSx SINE Alu -6 306 1 1335 205 10 16 chr12 125760101 125760413 -18522076 - AluJo SINE Alu -2 310 1 308 330 72 34 chr12 125760415 125760624 -18521865 - MIR SINE MIR -12 250 34 366 275 38 0 chr12 125761905 125761985 -18520504 + MER58B DNA MER1_type 1 83 -258 2187 118 0 3 chr12 125761987 125762300 -18520189 + AluSx SINE Alu 1 312 0 669 244 104 0 chr12 125762322 125762486 -18520003 - AluJo SINE Alu -11 301 121 1207 133 120 9 chr12 125762498 125762723 -18519766 + MER58B DNA MER1_type 92 341 0 1699 172 28 0 chr12 125763020 125763311 -18519178 + AluJb SINE Alu 1 299 -13 757 183 8 8 chr12 125764312 125764443 -18518046 - FLAM_A SINE Alu -2 131 1 191 228 0 114 chr12 125765820 125765899 -18516590 + MIR SINE MIR 36 105 -157 237 159 0 0 chr12 125766114 125766158 -18516331 + (CA)n Simple_repeat Simple_repeat 1 44 0 247 160 0 173 chr12 125767473 125767516 -18514973 - MIR SINE MIR -80 182 156 2018 135 0 3 chr12 125767516 125767812 -18514677 - AluSx SINE Alu -17 295 1 247 160 0 173 chr12 125767812 125767843 -18514646 - MIR SINE MIR -106 156 121 860 220 181 58 chr12 125767843 125768274 -18514215 + MLT1F LTR MaLR 7 490 -52 2128 124 0 9 chr12 125768276 125768591 -18513898 - AluSx SINE Alu 0 312 1 1084 82 0 0 chr12 125768591 125768726 -18513763 - AluSq/x SINE Alu -177 135 1 955 153 6 40 chr12 125768731 125768908 -18513581 - FRAM SINE Alu -7 169 1 322 186 0 0 chr12 125768908 125768967 -18513522 + MLT1F LTR MaLR 484 542 0 1825 141 14 3 chr12 125769478 125769768 -18512721 - AluJo SINE Alu -19 293 1 919 148 163 10 chr12 125769927 125770130 -18512359 + L1MB8 LINE L1 5565 5798 -380 623 103 0 0 chr12 125770131 125770218 -18512271 - AluSg/x SINE Alu -8 302 216 1685 181 17 55 chr12 125770218 125770309 -18512180 + L1MB8 LINE L1 5791 5884 -294 1899 112 0 68 chr12 125770309 125770630 -18511859 + AluSx SINE Alu 3 301 -11 1685 181 17 55 chr12 125770630 125770941 -18511548 + L1MB8 LINE L1 5884 6178 0 987 169 0 55 chr12 125770941 125771142 -18511347 + AluJo SINE Alu 120 309 -3 524 132 0 0 chr12 125771928 125772004 -18510485 - AluSx SINE Alu -11 299 224 1671 103 22 0 chr12 125772029 125772261 -18510228 - AluSx SINE Alu -75 237 1 845 216 96 0 chr12 125772261 125772469 -18510020 + L1MB7 LINE L1 5818 6045 -139 364 188 0 0 chr12 125772477 125772541 -18509948 + L1MB7 LINE L1 6112 6175 -9 345 256 76 58 chr12 125772565 125772737 -18509752 + L1ME3A LINE L1 5888 6062 -108 242 283 87 0 chr12 125773039 125773131 -18509358 - MIR SINE MIR -144 118 19 327 343 187 0 chr12 125773362 125773560 -18508929 + MIR SINE MIR 16 250 -12 242 245 102 61 chr12 125773569 125773667 -18508822 + L2 LINE L2 3169 3270 -2 229 242 0 45 chr12 125774097 125774163 -18508326 + MIR SINE MIR 109 171 -91 503 330 10 30 chr12 125774196 125774396 -18508093 + MIR SINE MIR 50 245 -17 281 329 12 0 chr12 125774401 125774486 -18508003 + (TAG)n Simple_repeat Simple_repeat 2 87 0 512 161 168 37 chr12 125774511 125774584 -18507905 - MIR SINE MIR -38 224 162 2279 101 0 0 chr12 125774584 125774892 -18507597 - AluSx SINE Alu -4 308 1 512 161 168 37 chr12 125774892 125774979 -18507510 - MIR SINE MIR -100 162 43 316 283 58 29 chr12 125775464 125775637 -18506852 - MIR SINE MIR -72 190 13 530 176 29 0 chr12 125776239 125776341 -18506148 + MER5A DNA MER1_type 5 109 -80 1356 142 41 0 chr12 125776346 125776565 -18505924 - AluJo SINE Alu -62 250 23 495 294 132 11 chr12 125776891 125777163 -18505326 - L2 LINE L2 -11 3302 2998 604 179 112 0 chr12 125777178 125777312 -18505177 + MER20 DNA MER1_type 71 219 0 796 291 170 40 chr12 125777317 125777977 -18504512 - L2 LINE L2 -338 2976 2220 1804 146 26 0 chr12 125777977 125778244 -18504245 + AluJb SINE Alu 1 274 -38 796 291 170 40 chr12 125778244 125778278 -18504211 - L2 LINE L2 -1094 2220 2192 292 285 80 0 chr12 125778388 125778525 -18503964 + L2 LINE L2 2940 3087 -226 1112 162 0 0 chr12 125778571 125778744 -18503745 - AluJb SINE Alu -6 306 134 2368 68 20 7 chr12 125778744 125779037 -18503452 - AluY SINE Alu -14 297 1 1517 196 3 28 chr12 125779655 125779940 -18502549 + AluJo SINE Alu 1 278 -34 465 188 195 13 chr12 125780075 125780229 -18502260 + MIR SINE MIR 61 242 -20 1722 181 17 7 chr12 125780273 125780566 -18501923 - AluJb SINE Alu -16 296 1 2198 107 3 3 chr12 125780619 125780917 -18501572 + AluSx SINE Alu 1 298 -14 313 233 0 14 chr12 125781539 125781612 -18500877 - MER69 DNA AcHobo -3 2523 2452 2201 104 7 0 chr12 125781622 125781910 -18500579 - AluSx SINE Alu -22 290 1 566 181 20 74 chr12 125782995 125783144 -18499345 + MIR SINE MIR 48 188 -74 1410 128 14 5 chr12 125783146 125783357 -18499132 + AluJb SINE Alu 86 298 -14 186 271 188 10 chr12 125783406 125783502 -18498987 - MIR SINE MIR 0 262 150 223 143 18 18 chr12 125783557 125783613 -18498876 + (TTCA)n Simple_repeat Simple_repeat 4 59 0 264 347 63 21 chr12 125783616 125783806 -18498683 - L2 LINE L2 -1 3271 3074 379 202 219 0 chr12 125784274 125784388 -18498101 + MER5A DNA MER1_type 51 189 0 707 145 120 0 chr12 125784637 125784754 -18497735 - FLAM_C SINE Alu -2 131 1 322 293 112 9 chr12 125784795 125784911 -18497578 - MIR SINE MIR -115 147 20 1362 184 0 0 chr12 125785160 125785378 -18497111 - AluJo SINE Alu -23 289 72 227 237 191 75 chr12 125785530 125785703 -18496786 + MLT1K LTR MaLR 77 269 -319 907 208 119 54 chr12 125786188 125786448 -18496041 + AluJo SINE Alu 20 296 -16 1896 147 3 30 chr12 125786454 125786753 -18495736 + AluJo SINE Alu 6 296 -16 2346 90 0 0 chr12 125787248 125787547 -18494942 + AluY SINE Alu 13 311 0 1578 165 0 73 chr12 125788035 125788219 -18494270 - AluJb SINE Alu -20 292 139 999 86 0 0 chr12 125788219 125788358 -18494131 + (TA)n Simple_repeat Simple_repeat 2 140 0 1578 165 0 73 chr12 125788358 125788488 -18494001 - AluJb SINE Alu -173 139 1 294 208 101 101 chr12 125788769 125788821 -18493668 - MIR SINE MIR -70 192 141 2078 133 3 0 chr12 125788821 125789115 -18493374 - AluSx SINE Alu -17 295 1 294 208 101 101 chr12 125789115 125789240 -18493249 - MIR SINE MIR -120 142 15 231 330 80 0 chr12 125789595 125789695 -18492794 - MIR SINE MIR -65 197 90 1259 241 79 94 chr12 125789705 125790323 -18492166 + L1ME3A LINE L1 5559 6161 -9 281 276 21 41 chr12 125790412 125790557 -18491932 + L1MB8 LINE L1 5623 5764 -2044 2130 118 14 7 chr12 125790557 125790854 -18491635 + AluSx SINE Alu 1 299 -13 555 273 149 0 chr12 125791297 125791491 -18490998 - MIR SINE MIR -2 260 38 2341 98 0 0 chr12 125791651 125791946 -18490543 + AluSx SINE Alu 1 295 -17 1282 188 21 57 chr12 125791951 125792287 -18490202 + L1MB8 LINE L1 5855 6178 0 330 335 114 12 chr12 125792322 125792489 -18490000 - MIR SINE MIR -11 251 68 2073 98 4 0 chr12 125792558 125792824 -18489665 + AluSx SINE Alu 1 267 -45 888 218 36 16 chr12 125793536 125793788 -18488701 + MER33 DNA MER1_type 32 288 -36 306 311 75 67 chr12 125793873 125793993 -18488496 + L1ME4a LINE L1 5611 5729 -392 2485 88 0 3 chr12 125793993 125794300 -18488189 + AluSq SINE Alu 1 306 -7 306 311 75 67 chr12 125794300 125794313 -18488176 + L1ME4a LINE L1 5729 5740 -381 1279 184 115 32 chr12 125794313 125794591 -18487898 + AluJb SINE Alu 1 301 -11 2204 124 7 0 chr12 125794593 125794892 -18487597 + AluSq SINE Alu 1 301 -12 306 311 75 67 chr12 125794892 125795250 -18487239 + L1ME4a LINE L1 5740 6110 -11 3087 201 14 45 chr12 125795274 125795461 -18487028 + L1MB7 LINE L1 5458 5649 -535 1905 152 24 0 chr12 125795461 125795750 -18486739 - AluSx SINE Alu -16 296 1 3087 201 14 45 chr12 125795750 125796186 -18486303 + L1MB7 LINE L1 5649 6057 -127 2129 137 10 0 chr12 125796186 125796486 -18486003 + AluSx SINE Alu 1 303 -9 3087 201 14 45 chr12 125796486 125796601 -18485888 + L1MB7 LINE L1 6057 6174 -10 284 243 191 12 chr12 125796659 125796832 -18485657 - MER102a DNA MER1_type -2 328 125 1294 210 98 18 chr12 125798246 125798632 -18483857 + L1MB5 LINE L1 5710 6126 -48 1053 110 0 0 chr12 125798632 125798768 -18483721 - AluSq/x SINE Alu -176 136 1 2140 96 0 36 chr12 125798803 125799104 -18483385 - AluJo SINE Alu -22 290 1 1266 109 0 0 chr12 125800060 125800225 -18482264 + AluSg/x SINE Alu 132 296 -14 598 258 61 12 chr12 125800337 125800500 -18481989 - MIR SINE MIR -91 171 1 2378 97 0 0 chr12 125800765 125801063 -18481426 + AluSx SINE Alu 1 298 -14 809 283 112 62 chr12 125801147 125802199 -18480290 + L1MDa LINE L1 66 1170 -4949 439 282 164 27 chr12 125802206 125802499 -18479990 + L1MDa LINE L1 1213 1819 -988 509 285 86 0 chr12 125802869 125803020 -18479469 - MIR SINE MIR -50 212 49 429 322 72 11 chr12 125804357 125804537 -18477952 + MIR SINE MIR 39 229 -33 712 167 18 0 chr12 125805056 125805170 -18477319 + FRAM SINE Alu 40 155 -21 662 149 15 67 chr12 125805787 125805921 -18476568 - FLAM_C SINE Alu -11 132 6 357 289 95 47 chr12 125805927 125806117 -18476372 + MIR SINE MIR 62 260 -2 295 327 65 73 chr12 125806815 125807063 -18475426 - L2 LINE L2 -20 3252 3007 2421 103 0 0 chr12 125807102 125807412 -18475077 + AluSq SINE Alu 2 311 -2 435 195 47 62 chr12 125808385 125808513 -18473976 + MER5B DNA MER1_type 6 131 -47 2176 114 7 0 chr12 125808543 125808833 -18473656 - AluSx SINE Alu -19 293 2 205 240 8 116 chr12 125808876 125808894 -18473595 - MIR3 SINE MIR -4 204 186 1502 159 50 25 chr12 125808894 125809177 -18473312 + AluJo SINE Alu 1 290 -22 205 240 8 116 chr12 125809177 125809279 -18473210 - MIR3 SINE MIR -22 186 97 1931 154 0 25 chr12 125809453 125809772 -18472717 - AluJb SINE Alu -1 311 1 991 201 83 0 chr12 125809994 125810198 -18472291 - MER58A DNA MER1_type -2 222 2 298 288 106 41 chr12 125810311 125810481 -18472008 - L1MC4 LINE L1 -107 7935 7755 2369 100 7 3 chr12 125810627 125810937 -18471552 + AluSx SINE Alu 1 311 -1 2022 154 0 3 chr12 125811092 125811391 -18471098 - AluJb SINE Alu -14 298 1 1706 179 0 10 chr12 125812011 125812313 -18470176 - AluJb SINE Alu -13 299 1 676 148 38 148 chr12 125812350 125812613 -18469876 - L1MA9 LINE L1 0 6312 6079 2779 149 21 27 chr12 125812673 125812920 -18469569 - L1MA9 LINE L1 -241 6071 5824 2312 103 20 0 chr12 125812920 125813222 -18469267 - AluSx SINE Alu -4 308 1 2779 149 21 27 chr12 125813222 125813498 -18468991 - L1MA9 LINE L1 -488 5824 5551 2241 108 10 0 chr12 125813756 125814051 -18468438 + AluSq SINE Alu 1 298 -15 590 302 33 11 chr12 125814888 125815070 -18467419 + MIR SINE MIR 37 222 -40 216 249 30 106 chr12 125815122 125815266 -18467223 - MIR SINE MIR -37 171 34 410 246 9 27 chr12 125815442 125815552 -18466937 + MIR SINE MIR 84 191 -71 2116 129 10 0 chr12 125815564 125815867 -18466622 + AluSx SINE Alu 1 306 -6 2251 97 0 3 chr12 125816511 125816799 -18465690 + AluSx SINE Alu 1 287 -25 688 112 0 9 chr12 125817659 125817766 -18464723 - L1MB3 LINE L1 0 6183 6078 2602 65 0 0 chr12 125818008 125818314 -18464175 + AluY SINE Alu 1 306 -5 528 209 76 0 chr12 125818375 125818480 -18464009 + FLAM_A SINE Alu 1 113 -29 25 0 0 0 chr12 125818601 125818626 -18463863 + AT_rich Low_complexity Low_complexity 1 25 0 766 225 67 11 chr12 125818699 125818877 -18463612 - MER5A DNA MER1_type -1 188 1 376 313 37 15 chr12 125818936 125819070 -18463419 + MIR SINE MIR 110 246 -16 2328 118 49 0 chr12 125819072 125819419 -18463070 + THE1B LTR MaLR 1 364 0 215 291 0 0 chr12 125819476 125819531 -18462958 + L2 LINE L2 3242 3296 -17 261 260 102 39 chr12 125819533 125819660 -18462829 - L2 LINE L2 -333 2980 2846 334 228 0 0 chr12 125819744 125819823 -18462666 - L2 LINE L2 -672 2642 2564 206 181 14 104 chr12 125821350 125821494 -18460995 + (CATGT)n Simple_repeat Simple_repeat 3 133 0 225 231 30 52 chr12 125823443 125823671 -18458818 + (CACCAT)n Simple_repeat Simple_repeat 1 222 0 * 363 126 20 131 chr12 125823668 125823867 -18458622 + (CATGT)n Simple_repeat Simple_repeat 1 177 0 223 226 39 66 chr12 125824495 125824676 -18457813 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 232 228 44 50 chr12 125824582 125824762 -18457727 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 222 111 19 37 chr12 125824849 125824903 -18457586 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 467 217 0 118 chr12 125825263 125825345 -18457144 + MIR SINE MIR 13 70 -192 1600 104 0 0 chr12 125825345 125825547 -18456942 - AluSg/x SINE Alu -15 295 94 467 217 0 118 chr12 125825547 125825616 -18456873 + MIR SINE MIR 70 146 -116 1754 141 50 14 chr12 125826453 125826750 -18455739 - AluJb SINE Alu -4 308 1 2342 94 0 3 chr12 125827013 125827312 -18455177 - AluSx SINE Alu -14 298 1 238 114 23 45 chr12 125827571 125827615 -18454874 + MER106B DNA MER1_type 3 45 -1014 507 33 0 0 chr12 125827650 125827711 -18454778 + (TA)n Simple_repeat Simple_repeat 2 62 0 1055 110 0 0 chr12 125827756 125827892 -18454597 + AluSq/x SINE Alu 1 136 -176 2290 107 3 10 chr12 125827892 125828200 -18454289 + AluSq SINE Alu 1 306 -7 1303 180 115 32 chr12 125828213 125828491 -18453998 + AluJb SINE Alu 1 301 -11 1527 103 5 0 chr12 125828493 125828687 -18453802 + AluSq SINE Alu 1 195 -118 2276 114 3 0 chr12 125828840 125829147 -18453342 - AluSg SINE Alu -2 308 1 253 247 14 41 chr12 125829215 125829288 -18453201 - L2 LINE L2 -299 2973 2903 450 289 49 23 chr12 125829345 125829370 -18453119 + MIR SINE MIR 12 35 -227 1770 149 6 37 chr12 125829370 125829691 -18452798 + AluJo SINE Alu 1 311 -1 450 289 49 23 chr12 125829691 125829905 -18452584 + MIR SINE MIR 35 261 -1 382 239 77 1 chr12 125830223 125830320 -18452169 - MIR SINE MIR -72 136 36 585 198 48 8 chr12 125830383 125830509 -18451980 - MIR SINE MIR -44 218 88 411 322 20 0 chr12 125830602 125830748 -18451741 + L2 LINE L2 2914 3062 -251 279 220 55 37 chr12 125831424 125831533 -18450956 - L1MC4a LINE L1 -1643 6165 6055 346 179 45 54 chr12 125832044 125832156 -18450333 - MIR SINE MIR -126 136 26 250 212 47 0 chr12 125832854 125832939 -18449550 - MIR SINE MIR -118 144 56 25 31 0 0 chr12 125832961 125832993 -18449496 + GC_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr12 125833061 125833089 -18449400 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 125833285 125833309 -18449180 + GC_rich Low_complexity Low_complexity 1 24 0 2251 81 3 0 chr12 125833734 125834030 -18448459 + AluSx SINE Alu 1 297 -15 474 204 2 4 chr12 125834044 125834150 -18448339 + L1MB5 LINE L1 5676 5780 -381 1029 154 23 130 chr12 125834150 125834437 -18448052 + AluJb SINE Alu 45 300 -12 1988 125 3 3 chr12 125834437 125834749 -18447740 + AluSx SINE Alu 1 312 0 1029 154 23 130 chr12 125834749 125834760 -18447729 + AluJb SINE Alu 300 311 -1 1873 154 89 5 chr12 125834761 125835130 -18447359 + L1MB5 LINE L1 5775 6174 0 422 163 0 33 chr12 125835140 125835232 -18447257 + MER106A DNA MER1_type 148 236 0 2010 115 30 0 chr12 125835468 125835763 -18446726 + AluSx SINE Alu 1 304 -8 1758 148 47 3 chr12 125835777 125836075 -18446414 - AluJo SINE Alu -1 311 1 195 42 0 0 chr12 125836300 125836324 -18446165 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2219 106 0 0 chr12 125836762 125837064 -18445425 + AluSx SINE Alu 10 311 -1 1604 132 62 7 chr12 125837063 125837335 -18445154 + AluSc SINE Alu 1 287 -22 * 1742 124 14 11 chr12 125837360 125837642 -18444847 + AluSq SINE Alu 19 301 -12 235 229 136 25 chr12 125838318 125838436 -18444053 + MLT1J2 LTR MaLR 20 150 -300 247 167 30 30 chr12 125838923 125838989 -18443500 + MLT1J1 LTR MaLR 363 428 -18 459 211 269 19 chr12 125839326 125839482 -18443007 + MER58C DNA MER1_type 3 197 -18 228 86 0 0 chr12 125839643 125839678 -18442811 + (A)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr12 125842222 125842245 -18440244 + AT_rich Low_complexity Low_complexity 1 23 0 2075 135 3 0 chr12 125843930 125844242 -18438247 + AluSq SINE Alu 1 313 0 237 108 0 0 chr12 125844251 125844288 -18438201 + (A)n Simple_repeat Simple_repeat 1 37 0 2140 114 3 0 chr12 125844289 125844588 -18437901 + AluSg1 SINE Alu 1 300 -9 326 353 26 20 chr12 125845264 125845417 -18437072 + L1MC4 LINE L1 5666 5819 -1989 917 150 0 0 chr12 125846136 125846269 -18436220 - FLAM_C SINE Alu 0 133 1 842 224 63 0 chr12 125846464 125846669 -18435820 + MER20 DNA MER1_type 2 219 0 279 0 0 0 chr12 125847841 125847872 -18434617 + (TG)n Simple_repeat Simple_repeat 2 32 0 423 0 0 0 chr12 125847926 125847973 -18434516 + (TG)n Simple_repeat Simple_repeat 2 48 0 255 241 19 0 chr12 125848039 125848093 -18434396 - MIR SINE MIR -6 256 202 559 266 133 78 chr12 125848595 125849152 -18433337 + L1MC4 LINE L1 6961 7486 -556 1880 143 14 0 chr12 125849152 125849445 -18433044 + AluJb SINE Alu 1 297 -15 559 266 133 78 chr12 125849445 125849884 -18432605 + L1MC4 LINE L1 7486 8012 -30 978 227 0 5 chr12 125851362 125851560 -18430929 - AluJo SINE Alu -21 291 95 895 196 24 0 chr12 125851559 125851727 -18430762 - AluJo SINE Alu -139 173 2 * 349 246 198 8 chr12 125851835 125851961 -18430528 + MIR SINE MIR 4 153 -109 509 331 81 15 chr12 125853081 125853353 -18429136 + L1ME LINE L1 4872 5161 -985 483 249 97 83 chr12 125853362 125853723 -18428766 + L1MC5 LINE L1 7560 7925 -36 558 267 71 40 chr12 125853823 125853869 -18428620 + L1ME LINE L1 5268 5311 -851 1851 123 19 7 chr12 125853869 125854177 -18428312 + AluSx SINE Alu 1 312 0 558 267 71 40 chr12 125854177 125854426 -18428063 + L1ME LINE L1 5311 5572 -590 206 315 14 0 chr12 125856152 125856225 -18426264 - MIR SINE MIR -9 253 180 301 331 41 16 chr12 125856457 125856578 -18425911 - L1MC5 LINE L1 -39 7922 7799 839 223 132 0 chr12 125857071 125857268 -18425221 - MER58A DNA MER1_type -1 223 1 1742 144 0 33 chr12 125857601 125857900 -18424589 - AluJb SINE Alu -22 290 2 322 287 118 76 chr12 125857913 125858310 -18424179 - L2 LINE L2 -2 3270 2857 434 305 36 48 chr12 125859313 125859480 -18423009 + MIR SINE MIR 28 192 -70 2231 103 7 0 chr12 125860219 125860529 -18421960 + AluSx SINE Alu 1 312 0 1874 142 7 10 chr12 125860629 125860932 -18421557 + AluSx SINE Alu 1 302 -10 771 137 53 23 chr12 125860954 125861085 -18421404 + AluJb SINE Alu 2 136 -176 2173 119 3 0 chr12 125861233 125861544 -18420945 - AluSx SINE Alu 0 312 1 2415 79 0 0 chr12 125862876 125863181 -18419308 + AluSp SINE Alu 1 305 -8 1798 142 74 3 chr12 125863184 125863493 -18418996 + L1MC1 LINE L1 6003 6333 0 1990 87 27 27 chr12 125864433 125864731 -18417758 + AluY SINE Alu 1 298 -13 2243 100 0 3 chr12 125865212 125865522 -18416967 + AluSc SINE Alu 1 309 0 1006 290 92 60 chr12 125865578 125865789 -18416700 + L1M4 LINE L1 3620 3823 -2323 4641 92 29 0 chr12 125865789 125866444 -18416045 + L1PA13 LINE L1 5490 6163 0 1006 290 92 60 chr12 125866444 125866641 -18415848 + L1M4 LINE L1 3823 4012 -2134 862 158 0 0 chr12 125866641 125866774 -18415715 - FLAM_A SINE Alu 0 133 1 1006 290 92 60 chr12 125866774 125867500 -18414989 + L1M4 LINE L1 4012 4791 -1355 1888 132 23 3 chr12 125868050 125868354 -18414135 + AluJo SINE Alu 1 310 -2 204 283 0 0 chr12 125868960 125869006 -18413483 + CT-rich Low_complexity Low_complexity 3 48 0 944 120 65 27 chr12 125869137 125869321 -18413168 - L1MD1 LINE L1 0 6242 6052 1314 231 41 44 chr12 125869719 125870005 -18412484 + MER58B DNA MER1_type 1 287 -2133 1992 109 24 7 chr12 125870005 125870298 -18412191 - AluSx SINE Alu -14 298 1 1314 231 41 44 chr12 125870298 125870353 -18412136 + MER58B DNA MER1_type 287 341 0 1937 121 24 0 chr12 125870834 125871123 -18411366 + AluJo SINE Alu 5 300 -12 287 279 116 52 chr12 125872523 125872695 -18409794 + MIR3 SINE MIR 18 200 -8 377 209 5 5 chr12 125873667 125873747 -18408742 + FLAM_A SINE Alu 61 125 -8 193 238 24 0 chr12 125874096 125874138 -18408351 - MIR SINE MIR -81 127 85 1505 260 158 13 chr12 125874963 125875967 -18406522 + L2 LINE L2 2168 3312 -1 2740 225 59 57 chr12 125876381 125877479 -18405010 - L1MC5 LINE L1 -435 7526 6494 1943 86 4 36 chr12 125877598 125877877 -18404612 - AluSc SINE Alu -15 294 25 682 287 70 41 chr12 125878057 125878472 -18404017 - HAL1b LINE L1 -641 707 281 674 96 14 34 chr12 125878489 125878635 -18403854 + (TCTA)n Simple_repeat Simple_repeat 3 145 0 1966 123 0 3 chr12 125878635 125878919 -18403570 - AluSx SINE Alu -29 283 1 366 235 0 0 chr12 125879192 125879260 -18403229 + AluJ/FLAM SINE Alu 13 80 -222 944 120 65 27 chr12 125879593 125879777 -18402712 + L1MD1 LINE L1 6052 6242 0 204 283 0 0 chr12 125879908 125879954 -18402535 + GA-rich Low_complexity Low_complexity 3 48 0 2032 132 23 3 chr12 125880560 125880864 -18401625 - AluJo SINE Alu -2 310 1 862 289 77 64 chr12 125881414 125882140 -18400349 - L1M4 LINE L1 -1355 4791 4077 882 158 0 0 chr12 125882140 125882273 -18400216 + FLAM_A SINE Alu 1 133 0 862 289 77 64 chr12 125882273 125882470 -18400019 - L1M4 LINE L1 -2069 4077 3848 4641 92 29 0 chr12 125882470 125883125 -18399364 - L1PA13 LINE L1 0 6163 5490 862 289 77 64 chr12 125883125 125883285 -18399204 - L1M4 LINE L1 -2298 3848 3692 2400 100 0 3 chr12 125883392 125883702 -18398787 - AluSc SINE Alu 0 309 1 2128 87 27 27 chr12 125884183 125884481 -18398008 - AluY SINE Alu -13 298 1 1810 142 74 3 chr12 125885421 125885730 -18396759 - L1MC1 LINE L1 0 6333 6003 2373 96 7 0 chr12 125885733 125886036 -18396453 - AluSq SINE Alu -8 305 1 253 247 14 41 chr12 125886104 125886177 -18396312 - L2 LINE L2 -299 2973 2903 390 300 53 23 chr12 125886234 125886259 -18396230 + MIR SINE MIR 12 35 -227 1770 149 6 37 chr12 125886259 125886580 -18395909 + AluJo SINE Alu 1 311 -1 390 300 53 23 chr12 125886580 125886793 -18395696 + MIR SINE MIR 35 261 -1 388 239 77 1 chr12 125887111 125887208 -18395281 - MIR SINE MIR -72 136 36 584 198 48 8 chr12 125887271 125887397 -18395092 - MIR SINE MIR -44 218 88 430 322 20 0 chr12 125887490 125887636 -18394853 + L2 LINE L2 2914 3062 -251 254 220 55 37 chr12 125888312 125888421 -18394068 - L1MC4a LINE L1 -1643 6165 6055 356 179 45 54 chr12 125888931 125889043 -18393446 - MIR SINE MIR -126 136 26 264 212 47 0 chr12 125889741 125889826 -18392663 - MIR SINE MIR -118 144 56 25 31 0 0 chr12 125889848 125889880 -18392609 + GC_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr12 125889948 125889976 -18392513 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 125890172 125890196 -18392293 + GC_rich Low_complexity Low_complexity 1 24 0 2429 85 3 0 chr12 125890621 125890927 -18391562 + AluSx SINE Alu 1 307 -5 1862 144 13 30 chr12 125891612 125891911 -18390578 + AluJo SINE Alu 1 294 -18 270 204 214 31 chr12 125892501 125892599 -18389890 + L2 LINE L2 2939 3054 -259 433 323 54 27 chr12 125892797 125892983 -18389506 - L2 LINE L2 -2 3270 3080 349 184 193 56 chr12 125893552 125893732 -18388757 + MIR SINE MIR 6 212 -50 185 222 0 37 chr12 125894076 125894130 -18388359 + MIR SINE MIR 167 218 -44 220 188 78 31 chr12 125894803 125894867 -18387622 + MIR SINE MIR 175 241 -21 429 179 94 60 chr12 125894870 125894987 -18387502 + MER63 DNA MER1_type 1 747 -89 799 188 0 0 chr12 125895022 125895150 -18387339 - FLAM_A SINE Alu -5 128 1 221 288 103 41 chr12 125895262 125895408 -18387081 - L2 LINE L2 -51 3221 3067 3584 128 87 63 chr12 125895639 125895857 -18386632 + LTR8A LTR ERV1 1 212 -515 1810 175 3 22 chr12 125895857 125896171 -18386318 + AluJo SINE Alu 1 308 -4 3584 128 87 63 chr12 125896171 125896662 -18385827 + LTR8A LTR ERV1 212 727 0 349 278 10 10 chr12 125897014 125897111 -18385378 + MIR SINE MIR 48 144 -118 23 0 0 0 chr12 125897639 125897662 -18384827 + AT_rich Low_complexity Low_complexity 1 23 0 2223 149 48 73 chr12 125898006 125898216 -18384273 + MLT1D LTR MaLR 1 215 -290 1709 176 0 11 chr12 125898216 125898500 -18383989 + AluJb SINE Alu 1 281 -31 200 33 0 33 chr12 125898500 125898530 -18383959 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 2223 149 48 73 chr12 125898530 125898769 -18383720 + MLT1D LTR MaLR 214 439 -66 2153 105 7 0 chr12 125898769 125899046 -18383443 - AluSx SINE Alu -19 293 15 2223 149 48 73 chr12 125899046 125899112 -18383377 + MLT1D LTR MaLR 439 505 0 2074 130 17 0 chr12 125899187 125899479 -18383010 - AluJo SINE Alu -15 297 1 1165 108 85 54 chr12 125899599 125899858 -18382631 - L1MA4 LINE L1 -6 6294 6028 1850 117 68 18 chr12 125899867 125900148 -18382341 - AluSx SINE Alu -17 295 1 1349 191 143 0 chr12 125900148 125900399 -18382090 - AluJo SINE Alu -15 287 1 2587 168 43 6 chr12 125900455 125900944 -18381545 - L1MB8 LINE L1 0 6178 5672 234 330 59 40 chr12 125901075 125901266 -18381223 - MIR SINE MIR -30 232 37 184 143 0 0 chr12 125901595 125901623 -18380866 + MER5A DNA MER1_type 118 145 -44 2214 122 0 0 chr12 125901627 125901922 -18380567 + AluSx SINE Alu 1 295 -17 1988 145 24 0 chr12 125903076 125903366 -18379123 - AluSx SINE Alu -14 298 2 206 182 0 23 chr12 125903368 125903412 -18379077 - MIR SINE MIR -58 150 108 572 131 12 0 chr12 125903542 125903626 -18378863 + AluS SINE Alu 3 87 -226 235 244 104 68 chr12 125903787 125903903 -18378586 + MIR SINE MIR 19 145 -63 435 208 48 48 chr12 125904746 125904871 -18377618 + MER5B DNA MER1_type 6 130 -48 26 30 0 0 chr12 125904871 125904904 -18377585 + AT_rich Low_complexity Low_complexity 1 33 0 2246 105 0 39 chr12 125904904 125905209 -18377280 - AluSx SINE Alu -19 293 1 253 149 21 0 chr12 125905216 125905263 -18377226 + MER5B DNA MER1_type 126 173 -5 206 218 316 45 chr12 125905272 125905405 -18377084 + MER5B DNA MER1_type 8 176 -2 246 81 0 0 chr12 125905830 125905867 -18376622 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2219 101 0 7 chr12 125905871 125906159 -18376330 - AluSq SINE Alu -27 286 1 1752 235 3 6 chr12 125906164 125906475 -18376014 - AluJb SINE Alu -2 310 1 312 347 45 40 chr12 125906925 125906997 -18375492 - L1ME LINE L1 -627 5494 5424 2274 76 10 36 chr12 125906997 125907300 -18375189 - AluSq SINE Alu -18 295 1 312 347 45 40 chr12 125907300 125907403 -18375086 - L1ME LINE L1 -697 5424 5318 504 311 136 24 chr12 125907519 125907901 -18374588 - L1ME LINE L1 -1079 5067 4643 247 306 10 20 chr12 125907975 125908073 -18374416 - L1ME LINE L1 -1537 4609 4513 310 366 49 22 chr12 125908147 125908213 -18374276 + L1MC4a LINE L1 5703 5766 -2042 1970 143 27 0 chr12 125908213 125908513 -18373976 + AluSp SINE Alu 1 308 -5 310 366 49 22 chr12 125908513 125908670 -18373819 + L1MC4a LINE L1 5766 5932 -1876 23 0 0 0 chr12 125909515 125909538 -18372951 + AT_rich Low_complexity Low_complexity 1 23 0 2302 90 0 17 chr12 125909617 125909918 -18372571 - AluSx SINE Alu -16 296 1 2102 112 39 0 chr12 125910586 125910872 -18371617 + AluSq SINE Alu 1 297 -16 2413 98 3 0 chr12 125910883 125911188 -18371301 + AluSp SINE Alu 4 309 -4 233 29 29 0 chr12 125911795 125911829 -18370660 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2123 138 0 0 chr12 125911857 125912161 -18370328 - AluSx SINE Alu -8 304 1 308 33 66 0 chr12 125912979 125913040 -18369449 - AluSp/q SINE Alu 0 303 239 831 224 6 24 chr12 125913342 125913512 -18368977 + FRAM SINE Alu 1 165 -11 271 321 18 46 chr12 125913926 125913960 -18368529 - MER5A DNA MER1_type -71 118 85 1108 231 18 9 chr12 125913960 125914181 -18368308 + MER58A DNA MER1_type 1 223 -1 271 321 18 46 chr12 125914181 125914255 -18368234 - MER5A DNA MER1_type -104 85 13 994 243 86 28 chr12 125915058 125915274 -18367215 + L1MDb LINE L1 886 1088 -5432 2336 113 0 10 chr12 125915274 125915585 -18366904 + AluSx SINE Alu 1 308 -4 994 243 86 28 chr12 125915585 125915896 -18366593 + L1MDb LINE L1 1088 1483 -5037 2105 97 4 0 chr12 125916300 125916605 -18365884 + AluSx SINE Alu 3 308 0 180 0 0 0 chr12 125916794 125916814 -18365675 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1831 119 14 14 chr12 125917885 125918162 -18364327 + AluSq SINE Alu 19 295 -18 605 298 22 11 chr12 125918386 125918567 -18363922 + L3 LINE CR1 824 1006 -571 902 139 28 72 chr12 125918601 125918781 -18363708 + AluJb SINE Alu 1 172 -140 626 234 136 11 chr12 125919402 125919586 -18362903 + MER63A DNA MER1_type 1 207 -3 35 24 0 0 chr12 125919806 125919848 -18362641 + GC_rich Low_complexity Low_complexity 1 42 0 259 84 76 25 chr12 125919848 125919967 -18362522 + (CGGG)n Simple_repeat Simple_repeat 3 127 0 74 33 0 0 chr12 125919967 125920057 -18362432 + GC_rich Low_complexity Low_complexity 1 90 0 1779 157 10 7 chr12 125920874 125921179 -18361310 - AluSg SINE Alu -3 307 2 773 278 12 8 chr12 125921932 125922173 -18360316 + MLT1D LTR MaLR 262 503 -2 1161 167 0 0 chr12 125922174 125922354 -18360135 + AluJb SINE Alu 133 312 0 2211 126 0 0 chr12 125922372 125922651 -18359838 + AluSg SINE Alu 1 279 -31 180 0 0 0 chr12 125922651 125922671 -18359818 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 * 207 0 0 0 chr12 125922670 125922693 -18359796 + (CA)n Simple_repeat Simple_repeat 2 24 0 2211 126 0 0 chr12 125922671 125922707 -18359782 + AluSg SINE Alu 278 294 -16 2088 87 69 7 chr12 125922712 125923000 -18359489 + AluSq SINE Alu 1 306 -7 1624 158 87 6 chr12 125923048 125923370 -18359119 - MLT1D LTR MaLR -157 348 1 210 269 0 0 chr12 125923451 125923503 -18358986 - L2 LINE L2 0 3313 3262 2120 105 0 7 chr12 125923560 125923893 -18358596 - AluSx SINE Alu 0 333 3 438 253 108 33 chr12 125924110 125924383 -18358106 + LTR16A LTR ERVL 15 356 -94 323 202 42 24 chr12 125924410 125924578 -18357911 + CT-rich Low_complexity Low_complexity 4 174 0 597 175 0 38 chr12 125924610 125924770 -18357719 + C-rich Low_complexity Low_complexity 1 154 0 279 0 0 0 chr12 125925150 125925181 -18357308 + (TG)n Simple_repeat Simple_repeat 1 31 0 2041 136 3 0 chr12 125925487 125925781 -18356708 - AluSx SINE Alu -17 295 1 893 209 36 0 chr12 125925974 125926170 -18356319 + MER20 DNA MER1_type 17 219 0 1959 143 10 26 chr12 125926729 125927036 -18355453 - AluJo SINE Alu -10 302 1 264 30 0 0 chr12 125927699 125927732 -18354757 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 1857 134 7 11 chr12 125927739 125928016 -18354473 - AluSx SINE Alu -36 276 1 2071 124 10 3 chr12 125928542 125928833 -18353656 + AluSx SINE Alu 1 293 -19 305 321 64 25 chr12 125928995 125929132 -18353357 - MIR3 SINE MIR -45 163 23 183 189 27 0 chr12 125929853 125929890 -18352599 + L2 LINE L2 3264 3301 -12 321 68 0 0 chr12 125931592 125931636 -18350853 + (CA)n Simple_repeat Simple_repeat 1 44 0 2444 88 13 0 chr12 125932185 125932491 -18349998 - AluSx SINE Alu -2 310 1 248 274 16 0 chr12 125932492 125932554 -18349935 + L2 LINE L2 3224 3286 -27 201 39 0 0 chr12 125932559 125932585 -18349904 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2082 148 0 7 chr12 125932628 125932933 -18349556 - AluSx SINE Alu -6 306 4 2479 74 0 0 chr12 125932943 125933240 -18349249 - AluY SINE Alu -14 297 1 2024 148 0 3 chr12 125933240 125933537 -18348952 - AluJo SINE Alu -16 296 1 2164 127 7 0 chr12 125934181 125934473 -18348016 + AluSx SINE Alu 1 294 -18 732 269 11 6 chr12 125934552 125934727 -18347762 - MER5A DNA MER1_type -7 182 7 2461 73 0 16 chr12 125935736 125936039 -18346450 - AluSc SINE Alu -11 298 1 2102 134 0 0 chr12 125936042 125936365 -18346124 - AluSq SINE Alu 0 323 1 230 303 61 0 chr12 125936458 125936524 -18345965 - MER91A DNA MER1_type -126 70 1 457 313 23 27 chr12 125937095 125937357 -18345132 - LTR16C LTR ERVL -18 473 213 1923 125 25 7 chr12 125937882 125938207 -18344282 - AluSx SINE Alu 0 330 1 1093 104 0 0 chr12 125938207 125938342 -18344147 - AluSq/x SINE Alu -177 135 1 1819 137 0 88 chr12 125938376 125938718 -18343771 - AluJb SINE Alu 0 312 1 1143 207 37 7 chr12 125938723 125938993 -18343496 - L1MB4 LINE L1 0 6180 5903 2119 98 8 0 chr12 125939027 125939293 -18343196 - AluSx SINE Alu -25 287 20 216 268 0 0 chr12 125939768 125939839 -18342650 + (CA)n Simple_repeat Simple_repeat 1 71 0 235 220 20 0 chr12 125939954 125940004 -18342485 + MIR SINE MIR 19 69 -193 2297 99 3 0 chr12 125940024 125940318 -18342171 - AluSg SINE Alu -15 295 1 546 158 0 0 chr12 125940324 125940419 -18342070 - AluSg/x SINE Alu -1 309 215 2189 104 4 0 chr12 125940434 125940712 -18341777 - AluSq SINE Alu -34 279 1 381 242 242 0 chr12 125940718 125940846 -18341643 + MIR SINE MIR 101 259 -3 376 205 26 0 chr12 125940952 125941030 -18341459 + L2 LINE L2 3220 3299 -14 2336 83 3 13 chr12 125941030 125941343 -18341146 - AluY SINE Alu -1 310 1 744 219 55 0 chr12 125942150 125942333 -18340156 - MER20 DNA MER1_type 0 219 27 2237 105 10 13 chr12 125942381 125942687 -18339802 - AluSx SINE Alu -7 305 1 297 261 252 8 chr12 125942732 125942851 -18339638 - MER5A DNA MER1_type -7 182 35 254 236 273 0 chr12 125942753 125942863 -18339626 + MER5A DNA MER1_type 40 179 -10 * 285 350 0 0 chr12 125943124 125943204 -18339285 + L2 LINE L2 3147 3226 -46 1652 204 0 16 chr12 125944506 125944820 -18337669 + AluJo SINE Alu 4 312 0 291 104 30 30 chr12 125944826 125944893 -18337596 + GA-rich Low_complexity Low_complexity 2 68 0 535 251 123 50 chr12 125944938 125945117 -18337372 - MIR SINE MIR -62 200 9 2416 76 0 13 chr12 125945536 125945839 -18336650 - AluY SINE Alu -12 299 1 593 259 35 21 chr12 125945984 125946301 -18336188 + LTR16B LTR ERVL 85 464 0 387 0 0 0 chr12 125946321 125946364 -18336125 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 2281 89 0 0 chr12 125946365 125946647 -18335842 - AluSx SINE Alu -30 282 1 1697 177 27 7 chr12 125946674 125946968 -18335521 - AluJo SINE Alu -8 304 5 594 243 23 34 chr12 125947079 125947256 -18335233 - HAL1 LINE L1 -10 2497 2323 2820 125 0 35 chr12 125947556 125947803 -18334686 + L1MA3 LINE L1 5833 6056 -249 1766 129 61 31 chr12 125947803 125948097 -18334392 + AluSx SINE Alu 1 303 -9 2820 125 0 35 chr12 125948097 125948338 -18334151 + L1MA3 LINE L1 6056 6304 -1 356 267 107 15 chr12 125948572 125948703 -18333786 - MER91B DNA MER1_type -11 179 37 728 248 160 5 chr12 125949287 125949493 -18332996 - MIR SINE MIR -21 241 4 1134 147 12 0 chr12 125949616 125949786 -18332703 - FRAM SINE Alu 0 176 5 1450 84 5 39 chr12 125949793 125949996 -18332493 - AluSp SINE Alu -8 305 110 640 141 10 0 chr12 125950124 125950223 -18332266 - AluJ/FLAM SINE Alu -210 102 3 2553 78 0 3 chr12 125950252 125950559 -18331930 + AluSq SINE Alu 1 306 -7 659 294 44 40 chr12 125951553 125951634 -18330855 + L2 LINE L2 1790 1869 -1445 243 0 0 0 chr12 125951634 125951661 -18330828 + (TTA)n Simple_repeat Simple_repeat 3 29 0 1744 188 3 0 chr12 125951663 125951945 -18330544 - AluJb SINE Alu -29 283 1 659 294 44 40 chr12 125951945 125952108 -18330381 + L2 LINE L2 1869 2038 -1276 2119 125 0 0 chr12 125952488 125952768 -18329721 + AluSx SINE Alu 1 280 -32 1902 117 96 0 chr12 125953877 125954158 -18328331 - AluSx SINE Alu -4 308 1 571 262 249 3 chr12 125954484 125954977 -18327512 - L2 LINE L2 -1 3312 2687 337 312 0 11 chr12 125954978 125955071 -18327418 + MER61E LTR ERV1 255 346 -223 * 444 241 63 28 chr12 125955062 125955231 -18327258 + LTR19C LTR ERV1 324 486 -293 2180 118 0 0 chr12 125955231 125955542 -18326947 - AluSg SINE Alu 0 311 1 444 241 63 28 chr12 125955542 125955579 -18326910 + LTR19C LTR ERV1 486 692 -87 455 318 134 19 chr12 125955661 125955922 -18326567 - L2 LINE L2 -659 2655 2365 452 270 35 0 chr12 125957041 125957156 -18325333 + L3 LINE CR1 613 731 -846 416 315 48 6 chr12 125957284 125957449 -18325040 + MIR SINE MIR 83 254 -8 * 558 273 21 7 chr12 125957418 125957594 -18324895 - MIR SINE MIR -6 202 19 2387 101 0 0 chr12 125957657 125957965 -18324524 - AluSg SINE Alu -2 308 1 761 333 124 66 chr12 125958284 125959041 -18323448 + L3 LINE CR1 741 1541 -36 694 196 0 0 chr12 125959500 125959612 -18322877 + FLAM_A SINE Alu 4 115 -18 534 57 0 0 chr12 125960249 125960319 -18322170 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 224 119 0 24 chr12 125960324 125960366 -18322123 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 825 194 0 0 chr12 125960382 125960642 -18321847 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 188 300 0 0 chr12 125960649 125960699 -18321790 - L2 LINE L2 0 3313 3264 1903 149 30 14 chr12 125960971 125961266 -18321223 - AluSx SINE Alu -12 300 1 1640 167 3 16 chr12 125961367 125961673 -18320816 + L1MB8 LINE L1 5734 6035 -143 471 239 85 0 chr12 125962107 125962237 -18320252 + MER3 DNA MER1_type 1 141 -68 24 0 0 0 chr12 125962258 125962282 -18320207 + AT_rich Low_complexity Low_complexity 1 24 0 1854 128 4 4 chr12 125962380 125962667 -18319822 + AluSx SINE Alu 18 304 0 792 199 0 7 chr12 125963026 125963162 -18319327 - AluJo SINE Alu -176 136 2 1844 199 5 17 chr12 125963194 125963600 -18318889 - L1MB7 LINE L1 -23 6161 5761 333 175 0 75 chr12 125963600 125963680 -18318809 + MER3 DNA MER1_type 136 209 0 268 208 0 0 chr12 125963637 125963690 -18318799 - MER3 DNA MER1_type -119 90 38 * 792 163 87 11 chr12 125964312 125964478 -18318011 + MLT1B LTR MaLR 1 184 -206 1882 67 0 0 chr12 125964478 125964703 -18317786 + AluY SINE Alu 87 311 0 792 163 87 11 chr12 125964703 125964720 -18317769 + MLT1B LTR MaLR 184 198 -192 361 103 29 0 chr12 125964722 125964790 -18317699 + CT-rich Low_complexity Low_complexity 2 71 0 646 224 0 0 chr12 125964791 125964916 -18317573 + MLT1B LTR MaLR 214 338 -52 7856 19 6 0 chr12 125964927 125965841 -18316648 - L1PA3 LINE L1 -4 6151 5237 271 133 89 0 chr12 125965871 125965916 -18316573 + MLT1B LTR MaLR 342 390 0 2167 137 0 0 chr12 125967050 125967356 -18315133 - AluSq SINE Alu -7 306 1 2170 117 51 20 chr12 125967698 125968049 -18314440 + MLT1A1 LTR MaLR 3 364 -1 1410 177 0 68 chr12 125968193 125968458 -18314031 - AluJo SINE Alu -65 247 1 2035 151 0 3 chr12 125968467 125968759 -18313730 - AluJb SINE Alu -20 292 2 1530 180 37 42 chr12 125968759 125969142 -18313347 - MER58D DNA MER1_type -5 381 1 1528 143 8 0 chr12 125969228 125969472 -18313017 + L1MC1 LINE L1 6088 6333 0 473 324 0 38 chr12 125969808 125969993 -18312496 + MER5B DNA MER1_type 1 178 0 2191 120 3 0 chr12 125970843 125971134 -18311355 - AluSq SINE Alu -21 292 1 448 262 214 7 chr12 125971136 125971281 -18311208 - MER5A DNA MER1_type -6 183 9 353 216 0 0 chr12 125971300 125971374 -18311115 - MER3 DNA MER1_type -4 205 132 291 167 0 0 chr12 125971391 125971439 -18311050 - MER5B DNA MER1_type -130 48 1 625 208 0 0 chr12 125971454 125971574 -18310915 - MER3 DNA MER1_type -89 120 1 22 0 0 30 chr12 125971704 125971717 -18310772 + AT_rich Low_complexity Low_complexity 1 13 -19 1053 32 0 0 chr12 125971717 125971840 -18310649 + L1PA3 LINE L1 6030 6152 -3 22 0 0 30 chr12 125971840 125971859 -18310630 + AT_rich Low_complexity Low_complexity 13 32 0 304 259 88 34 chr12 125972004 125972151 -18310338 + L1MCa LINE L1 1344 1498 -4928 544 266 4 41 chr12 125972385 125972608 -18309881 - MIR3 SINE MIR -46 216 8 2300 110 3 0 chr12 125973005 125973305 -18309184 - AluSx SINE Alu -11 301 1 694 196 0 0 chr12 125974120 125974232 -18308257 + FLAM_A SINE Alu 4 115 -18 570 54 0 0 chr12 125974869 125974943 -18307546 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 224 119 0 24 chr12 125974948 125974990 -18307499 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 825 194 0 0 chr12 125975006 125975266 -18307223 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 188 300 0 0 chr12 125975273 125975323 -18307166 - L2 LINE L2 0 3313 3264 1903 149 30 14 chr12 125975595 125975890 -18306599 - AluSx SINE Alu -12 300 1 1640 167 3 16 chr12 125975991 125976297 -18306192 + L1MB8 LINE L1 5734 6035 -143 471 239 85 0 chr12 125976731 125976861 -18305628 + MER3 DNA MER1_type 1 141 -68 24 0 0 0 chr12 125976882 125976906 -18305583 + AT_rich Low_complexity Low_complexity 1 24 0 1877 124 4 4 chr12 125977004 125977291 -18305198 + AluSx SINE Alu 18 304 0 792 199 0 7 chr12 125977650 125977786 -18304703 - AluJo SINE Alu -176 136 2 1844 199 5 17 chr12 125977818 125978224 -18304265 - L1MB7 LINE L1 -23 6161 5761 318 188 0 75 chr12 125978224 125978304 -18304185 + MER3 DNA MER1_type 136 209 0 250 226 0 0 chr12 125978261 125978314 -18304175 - MER3 DNA MER1_type -119 90 38 * 792 163 87 11 chr12 125978936 125979102 -18303387 + MLT1B LTR MaLR 1 184 -206 1882 67 0 0 chr12 125979102 125979327 -18303162 + AluY SINE Alu 87 311 0 792 163 87 11 chr12 125979327 125979344 -18303145 + MLT1B LTR MaLR 184 198 -192 361 103 29 0 chr12 125979346 125979414 -18303075 + CT-rich Low_complexity Low_complexity 2 71 0 646 224 0 0 chr12 125979415 125979540 -18302949 + MLT1B LTR MaLR 214 338 -52 7899 17 6 0 chr12 125979551 125980465 -18302024 - L1PA3 LINE L1 -4 6151 5237 271 133 89 0 chr12 125980495 125980540 -18301949 + MLT1B LTR MaLR 342 390 0 2163 140 0 0 chr12 125981674 125981981 -18300508 - AluSq SINE Alu -6 307 1 2144 120 51 20 chr12 125982323 125982674 -18299815 + MLT1A1 LTR MaLR 3 364 -1 1416 178 0 64 chr12 125982818 125983082 -18299407 - AluJo SINE Alu -65 247 1 2020 154 0 3 chr12 125983091 125983383 -18299106 - AluJb SINE Alu -20 292 2 1513 183 37 42 chr12 125983383 125983766 -18298723 - MER58D DNA MER1_type -5 381 1 1528 143 8 0 chr12 125983852 125984096 -18298393 + L1MC1 LINE L1 6088 6333 0 473 324 0 38 chr12 125984432 125984617 -18297872 + MER5B DNA MER1_type 1 178 0 2166 118 3 3 chr12 125985465 125985754 -18296735 - AluSg SINE Alu -21 289 1 615 109 16 55 chr12 125985754 125985882 -18296607 + L1MB5 LINE L1 6021 6143 -31 894 136 0 0 chr12 125985900 125986018 -18296471 + FRAM SINE Alu 21 138 -38 511 327 117 25 chr12 125986035 125986506 -18295983 + L2 LINE L2 2025 2538 -776 257 200 0 0 chr12 125986473 125986523 -18295966 + MIR SINE MIR 104 153 -109 * 234 130 43 0 chr12 125986551 125986597 -18295892 - MLT1H LTR MaLR -3 546 499 228 291 28 95 chr12 125986597 125986776 -18295713 - L2 LINE L2 -46 3267 3101 274 114 63 13 chr12 125986807 125986886 -18295603 + CT-rich Low_complexity Low_complexity 2 84 0 2396 110 3 0 chr12 125986888 125987198 -18295291 - AluSq SINE Alu -2 311 1 1033 55 18 18 chr12 125987200 125987364 -18295125 + (TTTC)n Simple_repeat Simple_repeat 2 165 0 2332 86 3 3 chr12 125987365 125987657 -18294832 - AluSp SINE Alu -21 292 1 1792 156 37 14 chr12 125987659 125987954 -18294535 - AluJb SINE Alu -10 302 1 428 212 66 29 chr12 125988258 125988395 -18294094 - MER67C LTR ERV1 -553 157 16 3833 145 22 77 chr12 125988464 125988627 -18293862 - LTR39 LTR ERV1 -4 779 609 2249 108 0 16 chr12 125988627 125988933 -18293556 - AluSx SINE Alu -11 301 1 3833 145 22 77 chr12 125988933 125989091 -18293398 - LTR39 LTR ERV1 -174 609 444 2233 101 10 3 chr12 125989091 125989389 -18293100 - AluSc SINE Alu -9 300 1 3833 145 22 77 chr12 125989389 125989843 -18292646 - LTR39 LTR ERV1 -339 444 46 459 277 19 13 chr12 125989871 125990030 -18292459 + MER90 LTR ERV1 404 563 -12 969 135 43 65 chr12 125990109 125990250 -18292239 + LTR49 LTR ERV1 371 507 -88 1480 176 0 52 chr12 125990250 125990426 -18292063 - AluJo SINE Alu -2 310 153 2380 95 0 7 chr12 125990426 125990722 -18291767 - AluSq SINE Alu -19 294 1 1480 176 0 52 chr12 125990722 125990834 -18291655 - AluJo SINE Alu -159 153 37 969 135 43 65 chr12 125990834 125990922 -18291567 + LTR49 LTR ERV1 507 595 0 264 262 126 55 chr12 125990974 125991157 -18291332 + L2 LINE L2 2916 3111 -161 257 207 17 0 chr12 125991219 125991277 -18291212 - MER69 DNA AcHobo 0 2526 2468 * 281 182 0 0 chr12 125991274 125991329 -18291160 - AluSx SINE Alu -1 307 253 2078 134 0 0 chr12 125991331 125991606 -18290883 - AluSx SINE Alu -37 275 1 221 226 103 75 chr12 125992108 125992254 -18290235 + MIR SINE MIR 1 150 -112 235 350 66 15 chr12 125992284 125992481 -18290008 - MIR SINE MIR 0 262 56 51 65 0 0 chr12 125992779 125992872 -18289617 + GC_rich Low_complexity Low_complexity 1 93 0 233 257 14 14 chr12 125993043 125993117 -18289372 + (CCG)n Simple_repeat Simple_repeat 2 75 0 251 258 113 4 chr12 125993427 125993539 -18288950 - MIR SINE MIR -45 217 87 1044 112 13 0 chr12 125993551 125993703 -18288786 - AluSg/x SINE Alu -14 296 143 2174 69 0 4 chr12 125993703 125993964 -18288525 - AluSq SINE Alu -53 260 1 661 149 41 0 chr12 125994105 125994226 -18288263 - MER34B LTR ERV1 -439 126 1 248 336 47 9 chr12 125994227 125994334 -18288155 - MIR SINE MIR -101 161 51 180 220 68 51 chr12 125994414 125994473 -18288016 - L2 LINE L2 -39 3233 3174 1459 83 0 0 chr12 125994632 125994690 -18287799 + (G)n Simple_repeat Simple_repeat 1 238 0 1459 83 0 0 chr12 125994690 125994870 -18287619 + (G)n Simple_repeat Simple_repeat 1 180 0 431 234 17 23 chr12 125994903 125995078 -18287411 + GA-rich Low_complexity Low_complexity 4 177 0 184 208 0 21 chr12 125995096 125995144 -18287345 + GA-rich Low_complexity Low_complexity 1 47 0 816 126 0 0 chr12 125995315 125995426 -18287063 + AluSp/q SINE Alu 181 291 -22 2029 162 3 0 chr12 125995426 125995728 -18286761 - AluJo SINE Alu -9 303 1 653 177 73 0 chr12 125995961 125996085 -18286404 - FLAM_A SINE Alu 0 133 1 2436 77 7 0 chr12 125996149 125996447 -18286042 - AluSq SINE Alu -12 301 2 291 239 53 53 chr12 125996451 125996564 -18285925 - MIR SINE MIR -51 211 99 252 344 0 11 chr12 125997500 125997590 -18284899 + GA-rich Low_complexity Low_complexity 2 90 0 340 257 9 44 chr12 125998059 125998172 -18284317 - MER103 DNA DNA -3 163 55 2658 58 0 0 chr12 125998183 125998494 -18283995 + AluY SINE Alu 1 311 0 25 65 0 0 chr12 125999134 125999180 -18283309 + AT_rich Low_complexity Low_complexity 1 46 0 2236 109 0 34 chr12 125999231 125999551 -18282938 + AluSx SINE Alu 1 309 -3 372 277 42 8 chr12 125999686 125999805 -18282684 - L2 LINE L2 -2 3311 3189 370 317 10 0 chr12 125999906 126000010 -18282479 + L2 LINE L2 3163 3267 -5 811 186 0 0 chr12 126000020 126000149 -18282340 + FLAM_C SINE Alu 5 133 0 756 101 23 0 chr12 126000751 126000880 -18281609 + (GA)n Simple_repeat Simple_repeat 1 132 0 511 293 66 66 chr12 126001240 126001513 -18280976 + L2 LINE L2 2962 3234 -38 258 105 0 0 chr12 126001559 126001597 -18280892 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 776 134 0 134 chr12 126001696 126001860 -18280629 + FLAM_C SINE Alu 2 143 0 273 218 18 0 chr12 126001860 126001915 -18280574 - MER63 DNA MER1_type -100 736 681 456 19 0 0 chr12 126001915 126001968 -18280521 + (TTA)n Simple_repeat Simple_repeat 1 53 0 1064 185 0 6 chr12 126002621 126002799 -18279690 - AluJ SINE Alu -16 296 120 610 185 11 18 chr12 126002812 126003073 -18279416 + CT-rich Low_complexity Low_complexity 1 259 0 1753 124 94 4 chr12 126003073 126003348 -18279141 - AluSq SINE Alu -13 300 1 723 185 8 0 chr12 126003371 126003490 -18278999 - AluJ SINE Alu -182 120 1 467 271 33 0 chr12 126003522 126003644 -18278845 + MER33 DNA MER1_type 6 131 -193 433 240 0 24 chr12 126003977 126004102 -18278387 - MER113 DNA MER1_type? -96 425 304 2584 53 0 28 chr12 126004124 126004444 -18278045 - AluY SINE Alu 0 311 1 2489 75 2 2 chr12 126004458 126004871 -18277618 - L1PB1 LINE L1 0 6151 5657 2228 126 3 3 chr12 126004874 126005183 -18277306 - AluSx SINE Alu -3 309 1 1953 92 15 0 chr12 126005241 126005501 -18276988 - AluSg SINE Alu -12 298 35 379 245 11 11 chr12 126005973 126006067 -18276422 - MER94 DNA DNA -12 122 29 2409 92 10 0 chr12 126006067 126006362 -18276127 + AluSq SINE Alu 1 298 -15 2232 113 0 3 chr12 126006991 126007291 -18275198 - AluSx SINE Alu -13 299 1 2537 52 0 26 chr12 126007349 126007656 -18274833 - AluY SINE Alu -12 299 1 27 49 0 0 chr12 126007692 126007733 -18274756 + AT_rich Low_complexity Low_complexity 1 41 0 665 300 100 16 chr12 126007789 126008196 -18274293 - L2 LINE L2 -111 3202 2754 2460 85 0 3 chr12 126008220 126008525 -18273964 - AluSc SINE Alu -5 304 1 360 223 64 11 chr12 126008676 126008770 -18273719 - MIR SINE MIR -62 146 48 2173 108 0 65 chr12 126009513 126009837 -18272652 + AluSx SINE Alu 1 303 -9 503 284 58 13 chr12 126009853 126010008 -18272481 + MER5B DNA MER1_type 17 178 0 2330 91 7 0 chr12 126010038 126010334 -18272155 - AluSg SINE Alu -12 298 1 354 291 34 0 chr12 126010347 126010464 -18272025 + MIR SINE MIR 18 138 -124 302 312 204 23 chr12 126010745 126010966 -18271523 + MIR SINE MIR 2 262 0 312 371 23 23 chr12 126011426 126011558 -18270931 + MER5A DNA MER1_type 58 189 0 424 289 117 91 chr12 126011779 126012087 -18270402 + L2 LINE L2 2957 3272 0 336 164 0 0 chr12 126012177 126012238 -18270251 + MER96B DNA MER1_type? 1 61 -356 226 80 520 0 chr12 126012246 126012296 -18270193 - MADE1 DNA Mariner 0 80 5 372 56 0 19 chr12 126012323 126012377 -18270112 - MADE1 DNA Mariner -27 53 1 28 79 0 0 chr12 126012404 126012467 -18270022 + AT_rich Low_complexity Low_complexity 1 63 0 226 114 0 114 chr12 126012545 126012615 -18269874 - MER96B DNA MER1_type? -238 179 118 2938 149 21 20 chr12 126012615 126013247 -18269242 + L1MA5A LINE L1 5018 5656 -641 2405 97 7 3 chr12 126013247 126013556 -18268933 + AluSx SINE Alu 1 310 -2 2938 149 21 20 chr12 126013556 126013694 -18268795 + L1MA5A LINE L1 5656 5792 -505 1395 72 0 72 chr12 126013733 126013955 -18268534 + L1MA1 LINE L1 6097 6302 0 2941 139 26 6 chr12 126014056 126014554 -18267935 + L1MA5A LINE L1 5790 6297 0 235 191 45 100 chr12 126014561 126014671 -18267818 - MER96B DNA MER1_type? -288 129 26 6319 77 9 17 chr12 126014805 126015052 -18267437 - L1MA1 LINE L1 -1 6301 6054 2121 132 0 0 chr12 126015052 126015339 -18267150 - AluSx SINE Alu -20 292 6 6319 77 9 17 chr12 126015339 126015984 -18266505 - L1MA1 LINE L1 -248 6054 5416 2050 143 3 31 chr12 126016064 126016385 -18266104 + AluJb SINE Alu 1 312 0 630 76 0 0 chr12 126017041 126017120 -18265369 + MADE1 DNA Mariner 1 79 -1 506 144 36 0 chr12 126017378 126017489 -18265000 - MER33 DNA MER1_type -4 320 206 50 104 0 0 chr12 126017562 126017745 -18264744 + AT_rich Low_complexity Low_complexity 1 183 0 723 156 99 77 chr12 126017745 126017858 -18264631 - MER33 DNA MER1_type -2323 262 153 2243 89 30 10 chr12 126017858 126018160 -18264329 + AluSc SINE Alu 1 308 -1 723 156 99 77 chr12 126018160 126018318 -18264171 - MER33 DNA MER1_type -2432 153 1 366 350 33 10 chr12 126019141 126019302 -18263187 + MIR SINE MIR 34 209 -53 2434 77 3 3 chr12 126020002 126020302 -18262187 + AluSg SINE Alu 2 301 -9 2297 96 13 3 chr12 126020315 126020618 -18261871 + AluSc SINE Alu 1 306 -3 763 203 59 20 chr12 126020831 126021033 -18261456 + MER113 DNA MER1_type? 235 444 -77 189 0 0 0 chr12 126021798 126021819 -18260670 + (TA)n Simple_repeat Simple_repeat 2 22 0 1906 138 7 26 chr12 126021819 126022123 -18260366 - AluJb SINE Alu -14 298 1 2358 123 3 0 chr12 126022336 126022645 -18259844 + AluSx SINE Alu 1 310 -2 2291 109 3 3 chr12 126023529 126023840 -18258649 + AluSx SINE Alu 1 311 -1 762 291 51 0 chr12 126025188 126025425 -18257064 - MER102a DNA MER1_type -8 322 74 2245 125 3 0 chr12 126025694 126025998 -18256491 + AluSx SINE Alu 1 305 -7 440 281 25 83 chr12 126025998 126026194 -18256295 - L1ME3 LINE L1 -233 5929 5758 2197 138 0 3 chr12 126026194 126026499 -18255990 - AluSx SINE Alu -8 304 1 440 281 25 83 chr12 126026499 126026626 -18255863 - L1ME3 LINE L1 -404 5758 5625 1954 223 86 42 chr12 126027331 126027856 -18254633 + MLT1H LTR MaLR 1 548 -1 279 210 0 16 chr12 126028102 126028164 -18254325 + MER20 DNA MER1_type 1 61 -158 3484 135 33 18 chr12 126028164 126028279 -18254210 - LTR19B LTR ERV1 0 580 468 1066 56 49 0 chr12 126028279 126028421 -18254068 - L1PA8 LINE L1 -5 6167 6019 3484 135 33 18 chr12 126028421 126028876 -18253613 - LTR19B LTR ERV1 -112 468 1 741 158 53 7 chr12 126028876 126029023 -18253466 + MER20 DNA MER1_type 56 209 -10 211 254 0 36 chr12 126029465 126029520 -18252969 + L2 LINE L2 3220 3272 0 2132 122 0 17 chr12 126029691 126030015 -18252474 + AluSx SINE Alu 1 312 0 345 250 0 0 chr12 126030049 126030125 -18252364 + L2 LINE L2 2893 2968 -346 2202 134 0 7 chr12 126030290 126030596 -18251893 - AluJo SINE Alu -8 304 1 560 270 11 27 chr12 126030817 126031002 -18251487 - L2 LINE L2 0 3313 3132 758 189 39 3 chr12 126031296 126031482 -18251007 - MIR SINE MIR -7 255 2 481 319 105 67 chr12 126031502 126031844 -18250645 - L2 LINE L2 0 3272 2918 308 314 78 44 chr12 126032020 126032291 -18250198 + L2 LINE L2 2355 2634 -680 23 33 0 0 chr12 126032297 126032327 -18250162 + AT_rich Low_complexity Low_complexity 1 30 0 325 202 0 16 chr12 126032391 126032515 -18249974 + (TTA)n Simple_repeat Simple_repeat 1 122 0 211 245 0 57 chr12 126033849 126033902 -18248587 - L2 LINE L2 -9 3304 3255 1023 231 53 33 chr12 126033991 126034290 -18248199 + MER58B DNA MER1_type 37 341 0 226 278 42 149 chr12 126034306 126034372 -18248117 + L2 LINE L2 2982 3053 -260 2278 93 3 39 chr12 126034372 126034683 -18247806 - AluSx SINE Alu -7 305 6 226 278 42 149 chr12 126034683 126034972 -18247517 + L2 LINE L2 3053 3299 -14 1239 244 18 55 chr12 126034984 126035022 -18247467 + MLT1A2 LTR MaLR 8 46 -328 3528 80 9 4 chr12 126035022 126035473 -18247016 + MLT2A2 LTR ERVL 1 453 0 1239 244 18 55 chr12 126035473 126035815 -18246674 + MLT1A2 LTR MaLR 46 374 0 2277 107 3 0 chr12 126036160 126036450 -18246039 - AluSp SINE Alu -22 291 1 3600 106 27 8 chr12 126036709 126037226 -18245263 - MER1A DNA MER1_type 0 527 1 1586 175 158 36 chr12 126037226 126037638 -18244851 + MLT1C LTR MaLR 1 462 -5 2563 46 13 3 chr12 126038116 126038421 -18244068 + AluY SINE Alu 1 308 -3 198 0 0 0 chr12 126038441 126038463 -18244026 + (TC)n Simple_repeat Simple_repeat 2 23 0 2070 123 17 10 chr12 126039892 126040185 -18242304 - AluSx SINE Alu -17 295 1 324 332 45 19 chr12 126040202 126040419 -18242070 - MIR3 SINE MIR -10 252 4 261 135 0 96 chr12 126040669 126040721 -18241768 - MIR SINE MIR 0 262 216 797 249 74 9 chr12 126040721 126040938 -18241551 + MIR SINE MIR 21 251 -11 214 215 183 54 chr12 126040973 126041066 -18241423 - MIR SINE MIR -60 202 98 2582 43 3 3 chr12 126041073 126041378 -18241111 + AluY SINE Alu 1 305 -6 2195 121 0 3 chr12 126041508 126041806 -18240683 - AluSx SINE Alu -15 297 1 2337 77 0 0 chr12 126042664 126042950 -18239539 + AluY SINE Alu 15 300 -11 379 342 87 27 chr12 126043044 126043342 -18239147 + L2 LINE L2 2939 3254 -18 322 295 9 9 chr12 126043663 126043768 -18238721 - L3b LINE CR1 -173 1410 1306 2510 63 0 7 chr12 126043940 126044241 -18238248 + AluY SINE Alu 1 299 -12 2049 139 3 3 chr12 126044550 126044851 -18237638 - AluSx SINE Alu -11 301 1 2377 81 0 3 chr12 126045384 126045680 -18236809 - AluSx SINE Alu -17 295 1 2072 138 0 19 chr12 126046115 126046427 -18236062 - AluJb SINE Alu -6 306 1 1669 138 8 0 chr12 126046497 126046736 -18235753 + AluSx SINE Alu 3 243 -69 225 0 0 0 chr12 126046755 126046780 -18235709 + (TAA)n Simple_repeat Simple_repeat 2 26 0 536 208 68 129 chr12 126046780 126046986 -18235503 - Charlie8 DNA MER1_type -65 276 59 1640 153 6 91 chr12 126046986 126047326 -18235163 + AluJo SINE Alu 1 311 -1 536 208 68 129 chr12 126047326 126047360 -18235129 - Charlie8 DNA MER1_type -282 59 183 2446 85 0 0 chr12 126047360 126047655 -18234834 - AluSg SINE Alu -15 295 1 536 208 68 129 chr12 126047655 126047815 -18234674 - Charlie8 DNA MER1_type -157 184 16 313 278 90 41 chr12 126048494 126048656 -18233833 + L1ME4a LINE L1 5457 5610 -511 1999 142 3 29 chr12 126048656 126048967 -18233522 - AluJb SINE Alu -9 303 1 313 278 90 41 chr12 126048967 126049350 -18233139 + L1ME4a LINE L1 5610 6030 -91 1134 167 4 63 chr12 126049391 126049630 -18232859 - AluJo SINE Alu -3 309 85 2053 136 3 0 chr12 126049630 126049925 -18232564 - AluSx SINE Alu -16 296 1 580 199 73 109 chr12 126050937 126050996 -18231493 - MIR SINE MIR -10 252 192 830 158 0 0 chr12 126050996 126051129 -18231360 - FLAM_C SINE Alu 0 133 1 580 199 73 109 chr12 126051129 126051183 -18231306 - MIR SINE MIR -70 192 138 1617 193 13 23 chr12 126051183 126051483 -18231006 - AluJo SINE Alu -15 297 1 580 199 73 109 chr12 126051483 126051599 -18230890 - MIR SINE MIR -124 138 31 469 250 6 9 chr12 126051618 126051962 -18230527 + (CAT)n Simple_repeat Simple_repeat 1 343 0 349 201 86 101 chr12 126051962 126052067 -18230422 - MIR SINE MIR -124 138 34 1890 142 14 10 chr12 126052067 126052356 -18230133 - AluJo SINE Alu -22 290 1 349 201 86 101 chr12 126052356 126052389 -18230100 - MIR SINE MIR -228 34 2 215 185 108 15 chr12 126053057 126053122 -18229367 + MIR3 SINE MIR 133 203 -5 448 273 130 13 chr12 126053189 126053343 -18229146 - MIR SINE MIR -44 218 47 2176 106 0 0 chr12 126053372 126053646 -18228843 - AluSx SINE Alu -17 295 22 1656 132 8 39 chr12 126053963 126054221 -18228268 - AluSx SINE Alu -9 303 54 473 267 179 10 chr12 126054427 126054622 -18227867 + MIR SINE MIR 2 229 -33 1025 211 0 0 chr12 126054718 126054922 -18227567 + MER3 DNA MER1_type 6 209 0 216 297 162 0 chr12 126055276 126055350 -18227139 + MIR SINE MIR 173 258 -4 334 243 14 0 chr12 126055353 126055427 -18227062 - MIR SINE MIR -114 148 74 2333 118 0 0 chr12 126055635 126055941 -18226548 - AluSx SINE Alu -6 306 1 1091 181 4 40 chr12 126056099 126056325 -18226164 - MER20 DNA MER1_type 0 219 2 444 201 98 139 chr12 126056587 126056650 -18225839 - MER5A DNA MER1_type -2 187 123 1928 148 0 0 chr12 126056650 126056933 -18225556 + AluJo SINE Alu 1 283 -29 444 201 98 139 chr12 126056933 126057063 -18225426 - MER5A DNA MER1_type -66 123 2 22 0 0 0 chr12 126057824 126057846 -18224643 + AT_rich Low_complexity Low_complexity 1 22 0 1661 166 8 4 chr12 126057858 126058111 -18224378 - AluJo SINE Alu -58 254 1 482 285 30 42 chr12 126058645 126058810 -18223679 - MIR3 SINE MIR -16 192 30 1912 205 44 30 chr12 126058900 126059398 -18223091 + MLT1D LTR MaLR 1 505 0 1038 292 105 14 chr12 126059459 126059772 -18222717 + L2 LINE L2 2831 3197 -116 2362 97 0 0 chr12 126059772 126060070 -18222419 - AluSx SINE Alu -14 298 1 1038 292 105 14 chr12 126060070 126060194 -18222295 + L2 LINE L2 3197 3308 -5 1032 156 0 0 chr12 126060659 126060839 -18221650 + CT-rich Low_complexity Low_complexity 1 180 0 219 216 0 0 chr12 126060842 126060879 -18221610 + polypyrimidine Low_complexity Low_complexity 1 37 0 898 162 11 6 chr12 126060882 126061061 -18221428 + CT-rich Low_complexity Low_complexity 1 180 0 978 176 4 4 chr12 126061078 126061613 -18220876 + CT-rich Low_complexity Low_complexity 1 535 0 279 146 0 55 chr12 126061614 126061669 -18220820 + (TCCC)n Simple_repeat Simple_repeat 2 53 0 476 295 16 16 chr12 126062186 126062315 -18220174 + MIR SINE MIR 18 146 -62 1694 146 55 29 chr12 126062536 126062835 -18219654 - AluSx SINE Alu 0 306 1 325 177 65 0 chr12 126062904 126062966 -18219523 + MIR SINE MIR 81 146 -62 1816 127 60 8 chr12 126063208 126063500 -18218989 + AluJb SINE Alu 1 306 0 1496 241 122 32 chr12 126064142 126064732 -18217757 + MER20B DNA MER1_type 29 671 -112 2539 83 0 0 chr12 126064864 126065176 -18217313 + AluSx SINE Alu 1 312 0 339 259 11 35 chr12 126066799 126066930 -18215559 + L2 LINE L2 2894 3013 -300 2148 106 7 0 chr12 126066945 126067228 -18215261 - AluSx SINE Alu -26 286 2 1162 129 0 34 chr12 126067315 126067493 -18214996 - AluSg/x SINE Alu -8 302 131 753 257 9 29 chr12 126067499 126067538 -18214951 + L2 LINE L2 3108 3146 -167 2108 162 0 17 chr12 126067538 126067890 -18214599 - MER7A DNA MER2_type 0 346 3 753 257 9 29 chr12 126067890 126068060 -18214429 + L2 LINE L2 3146 3313 0 186 296 76 61 chr12 126068711 126068843 -18213646 + MIR SINE MIR 67 200 -62 327 130 0 0 chr12 126069036 126069090 -18213399 + (CA)n Simple_repeat Simple_repeat 2 55 0 224 179 0 0 chr12 126070927 126070966 -18211523 + L2 LINE L2 3270 3308 -5 351 292 37 14 chr12 126071062 126071191 -18211298 - MIR SINE MIR -60 148 20 863 114 0 53 chr12 126071208 126071340 -18211149 + AluJo/FLAM SINE Alu 4 128 -174 2283 89 3 0 chr12 126071343 126071625 -18210864 + AluSq SINE Alu 1 283 -30 193 225 93 85 chr12 126073098 126073163 -18209326 + MIR3 SINE MIR 12 75 -133 2231 106 7 0 chr12 126073163 126073455 -18209034 - AluSx SINE Alu -18 294 1 193 225 93 85 chr12 126073455 126073518 -18208971 + MIR3 SINE MIR 75 141 -67 308 324 98 23 chr12 126073718 126073891 -18208598 + MIR SINE MIR 77 262 0 218 264 62 40 chr12 126074280 126074415 -18208074 + MIR SINE MIR 34 174 -76 198 257 43 57 chr12 126074412 126074482 -18208007 - MIR SINE MIR -18 244 176 * 378 0 0 0 chr12 126074490 126074532 -18207957 + (GA)n Simple_repeat Simple_repeat 1 42 0 1070 197 62 5 chr12 126074559 126074767 -18207722 - AluJo SINE Alu -92 220 1 190 200 25 73 chr12 126074945 126075022 -18207467 - MIR SINE MIR -62 146 86 274 380 20 0 chr12 126075054 126075154 -18207335 - MIR3 SINE MIR -15 193 92 1002 174 30 137 chr12 126075178 126075309 -18207180 + MER33 DNA MER1_type 1 137 -2448 781 30 0 10 chr12 126075309 126075408 -18207081 + L1PB1 LINE L1 6054 6151 0 1002 174 30 137 chr12 126075408 126075550 -18206939 + MER33 DNA MER1_type 137 293 -2292 2010 163 3 0 chr12 126075550 126075856 -18206633 - AluJb SINE Alu -5 307 1 1002 174 30 137 chr12 126075856 126075867 -18206622 + MER33 DNA MER1_type 293 304 -2281 2601 62 0 3 chr12 126075867 126076176 -18206313 - AluY SINE Alu -3 308 1 1002 174 30 137 chr12 126076176 126076255 -18206234 + MER33 DNA MER1_type 304 320 -4 1595 190 0 8 chr12 126076579 126076693 -18205796 + AluJb SINE Alu 23 136 -176 2218 92 0 7 chr12 126076693 126077015 -18205474 + AluSx SINE Alu 1 320 0 1595 190 0 8 chr12 126077015 126077162 -18205327 + AluJb SINE Alu 136 283 -29 1876 31 31 0 chr12 126077162 126077384 -18205105 + L1PA3 LINE L1 5924 6152 -3 225 274 0 0 chr12 126077424 126077486 -18205003 + L1MC/D LINE L1 5813 5874 -1934 778 270 68 48 chr12 126078134 126078549 -18203940 + L1MC4a LINE L1 5475 5897 -1911 1713 201 3 0 chr12 126078763 126079062 -18203427 - AluJo SINE Alu -10 302 3 601 205 118 6 chr12 126079109 126079270 -18203219 + MIR SINE MIR 20 198 -64 1372 120 0 0 chr12 126079278 126079469 -18203020 - AluSg/x SINE Alu 0 312 122 1833 153 13 22 chr12 126079471 126079785 -18202704 - AluSx SINE Alu -1 311 1 251 317 23 39 chr12 126080457 126080673 -18201816 + MIR SINE MIR 9 262 0 274 239 0 28 chr12 126080864 126080935 -18201554 + T-rich Low_complexity Low_complexity 4 72 0 978 302 47 62 chr12 126081003 126081821 -18200668 - L2 LINE L2 -58 3214 2370 319 178 10 10 chr12 126081825 126082016 -18200473 + AluJo SINE Alu 19 302 0 255 125 0 0 chr12 126082016 126082056 -18200433 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 453 331 25 6 chr12 126082224 126082381 -18200108 + MIR SINE MIR 51 210 -52 326 264 25 74 chr12 126082709 126082830 -18199659 + L1MDa LINE L1 2467 2581 -3959 232 208 111 0 chr12 126083092 126083164 -18199325 - MER116 DNA Mariner 0 80 1 405 301 79 35 chr12 126083185 126083388 -18199101 - MIR SINE MIR -49 213 2 186 333 144 9 chr12 126083620 126083731 -18198758 - MIR3 SINE MIR -31 177 52 252 77 0 0 chr12 126083755 126083794 -18198695 + (CTTG)n Simple_repeat Simple_repeat 2 40 0 2196 93 38 0 chr12 126083794 126084083 -18198406 - AluSx SINE Alu -12 300 1 922 196 6 6 chr12 126084474 126084642 -18197847 + AluJ SINE Alu 137 304 -8 255 239 0 0 chr12 126084645 126084691 -18197798 + L2 LINE L2 3208 3253 -19 289 217 171 0 chr12 126084744 126084832 -18197657 - Charlie8 DNA MER1_type -2139 278 177 2387 98 0 0 chr12 126084950 126085255 -18197234 + AluSx SINE Alu 1 305 -7 587 207 124 5 chr12 126085341 126085504 -18196985 + MER5A DNA MER1_type 4 189 0 2240 125 0 6 chr12 126085766 126086078 -18196411 + AluSx SINE Alu 1 310 -2 454 261 37 58 chr12 126086091 126086332 -18196157 + MER102a DNA MER1_type 95 330 0 207 0 0 0 chr12 126086779 126086802 -18195687 + (T)n Simple_repeat Simple_repeat 1 23 0 532 283 13 44 chr12 126087073 126087232 -18195257 + MIR SINE MIR 50 203 -59 308 206 10 31 chr12 126087247 126087344 -18195145 + MER113 DNA MER1_type? 30 124 -397 1545 214 72 0 chr12 126087467 126087855 -18194634 + L1MD3 LINE L1 7580 7995 0 1920 181 16 11 chr12 126087859 126088230 -18194259 - L1MB5 LINE L1 -147 6027 5655 580 189 189 0 chr12 126088228 126088355 -18194134 + L1MB5 LINE L1 6016 6166 -8 * 1983 138 3 7 chr12 126088496 126088786 -18193703 - AluJo SINE Alu -23 289 1 1236 229 88 54 chr12 126089499 126089593 -18192896 + LTR33 LTR ERVL 1 90 -431 2528 52 0 3 chr12 126089593 126089899 -18192590 + AluY SINE Alu 1 305 -6 1236 229 88 54 chr12 126089899 126090306 -18192183 + LTR33 LTR ERVL 90 519 -2 614 249 53 26 chr12 126090443 126090632 -18191857 - MIR SINE MIR -58 204 11 1842 155 29 0 chr12 126090661 126090938 -18191551 + AluJb SINE Alu 2 286 -26 407 19 19 0 chr12 126090938 126090990 -18191499 + (CATA)n Simple_repeat Simple_repeat 2 54 0 402 74 0 0 chr12 126091737 126091766 -18190723 + (TCCA)n Simple_repeat Simple_repeat 1 83 0 402 74 0 0 chr12 126091766 126091820 -18190669 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 788 147 29 4 chr12 126091845 126092124 -18190365 + (TCTA)n Simple_repeat Simple_repeat 1 286 0 291 261 35 35 chr12 126092130 126092272 -18190217 - L1MC4 LINE L1 -150 7892 7751 874 99 0 16 chr12 126092592 126092713 -18189776 + AluJb SINE Alu 14 132 -180 349 268 21 49 chr12 126092777 126092919 -18189570 + MARNA DNA Mariner 275 412 -174 230 297 109 51 chr12 126093441 126093616 -18188873 + L2 LINE L2 3083 3267 -5 223 235 44 44 chr12 126094401 126094469 -18188020 - MIR3 SINE MIR -42 166 99 31 26 0 0 chr12 126094493 126094531 -18187958 + AT_rich Low_complexity Low_complexity 1 38 0 1707 169 29 0 chr12 126094534 126094813 -18187676 - AluJb SINE Alu -25 287 1 261 350 51 7 chr12 126094889 126095026 -18187463 - MIR SINE MIR -59 203 61 181 255 0 21 chr12 126095135 126095182 -18187307 + L2 LINE L2 3009 3054 -259 1460 154 0 0 chr12 126095802 126096022 -18186467 + AluJb SINE Alu 1 220 -92 527 248 16 8 chr12 126096253 126096382 -18186107 + MIR3 SINE MIR 30 159 -49 369 280 35 49 chr12 126096389 126096532 -18185957 - MER5A DNA MER1_type -23 166 26 531 271 92 24 chr12 126097310 126097517 -18184972 - MIR SINE MIR -34 228 8 281 318 51 56 chr12 126097709 126097904 -18184585 + MIR SINE MIR 35 228 -34 531 0 0 0 chr12 126098638 126098697 -18183792 + (TA)n Simple_repeat Simple_repeat 2 60 0 559 248 59 13 chr12 126098740 126098893 -18183596 - MIR SINE MIR -56 206 47 24 0 0 0 chr12 126099968 126099992 -18182497 + GC_rich Low_complexity Low_complexity 1 24 0 309 264 19 38 chr12 126100081 126100187 -18182302 + C-rich Low_complexity Low_complexity 2 105 0 528 16 0 0 chr12 126100600 126100661 -18181828 + (CA)n Simple_repeat Simple_repeat 2 62 0 378 129 0 0 chr12 126101258 126101320 -18181169 + (CA)n Simple_repeat Simple_repeat 2 63 0 308 244 231 38 chr12 126101637 126101797 -18180692 + MIR SINE MIR 63 253 -9 201 139 0 0 chr12 126102472 126102515 -18179974 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 278 211 18 18 chr12 126102547 126102713 -18179776 + (CAGAGA)n Simple_repeat Simple_repeat 4 169 0 188 178 10 50 chr12 126102721 126102822 -18179667 + GA-rich Low_complexity Low_complexity 2 98 0 280 228 14 0 chr12 126102866 126103011 -18179478 + GA-rich Low_complexity Low_complexity 2 148 0 612 326 9 5 chr12 126103113 126103328 -18179161 - MIR SINE MIR 0 262 47 414 236 121 30 chr12 126104255 126104420 -18178069 + MIR SINE MIR 69 248 -14 1005 182 16 5 chr12 126104602 126104789 -18177700 + MER5A DNA MER1_type 1 189 0 290 347 88 7 chr12 126105247 126105394 -18177095 - MIR3 SINE MIR -20 188 30 302 363 0 9 chr12 126105630 126105743 -18176746 + MIR3 SINE MIR 13 124 -84 272 319 50 50 chr12 126106728 126106888 -18175601 + MER5A DNA MER1_type 12 171 -18 282 369 50 21 chr12 126106733 126106874 -18175615 - MER5B DNA MER1_type -1 177 33 439 305 14 21 chr12 126107189 126107330 -18175159 + MIR3 SINE MIR 20 159 -49 231 259 98 54 chr12 126107567 126107679 -18174810 - L2 LINE L2 -35 3237 3121 938 232 24 20 chr12 126107910 126108162 -18174327 + MIR SINE MIR 9 256 -6 890 200 63 0 chr12 126108351 126108526 -18173963 + MER5A DNA MER1_type 1 186 -3 936 134 0 0 chr12 126108798 126108969 -18173520 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 1038 135 0 0 chr12 126108983 126109161 -18173328 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 1574 195 78 53 chr12 126109165 126109616 -18172873 + LTR40b LTR ERVL 1 462 0 324 322 85 17 chr12 126109894 126110071 -18172418 + L2 LINE L2 3074 3262 -10 228 179 0 0 chr12 126110146 126110185 -18172304 - MIR SINE MIR -18 244 206 443 173 62 0 chr12 126110267 126110348 -18172141 - MIR SINE MIR -173 89 4 631 253 163 10 chr12 126110464 126110666 -18171823 - MIR SINE MIR -12 250 18 450 260 0 24 chr12 126110877 126111000 -18171489 + MIR SINE MIR 21 140 -122 713 247 188 31 chr12 126111254 126111311 -18171178 + LTR16C LTR ERVL 195 242 -249 2467 116 19 11 chr12 126111311 126111672 -18170817 + THE1B LTR MaLR 1 364 0 713 247 188 31 chr12 126111672 126111869 -18170620 + LTR16C LTR ERVL 242 489 -2 206 344 43 0 chr12 126111878 126111971 -18170518 - L2 LINE L2 -15 3257 3161 2321 119 0 6 chr12 126112034 126112345 -18170144 + AluSx SINE Alu 1 309 -3 571 221 90 117 chr12 126112563 126112862 -18169627 - L2 LINE L2 -1 3312 3022 1889 142 0 8 chr12 126112971 126113238 -18169251 + AluSx SINE Alu 1 265 -47 23 54 0 0 chr12 126113246 126113283 -18169206 + AT_rich Low_complexity Low_complexity 1 37 0 284 231 176 0 chr12 126113614 126113705 -18168784 - MIR SINE MIR -75 187 81 290 267 119 67 chr12 126113750 126113960 -18168529 - L2 LINE L2 -181 3091 2871 626 255 125 9 chr12 126115141 126115357 -18167132 + LTR33 LTR ERVL 18 258 -263 562 150 38 23 chr12 126115432 126115565 -18166924 + LTR33 LTR ERVL 386 520 -1 403 273 89 15 chr12 126115796 126115958 -18166531 + MIR SINE MIR 19 191 -65 536 314 151 24 chr12 126115983 126116579 -18165910 - L2 LINE L2 0 3272 2554 541 245 41 52 chr12 126116664 126116992 -18165497 + MLT1J2 LTR MaLR 64 446 -4 628 281 97 41 chr12 126116996 126117316 -18165173 - L2 LINE L2 -773 2541 2204 190 191 0 24 chr12 126117315 126117357 -18165132 + L2 LINE L2 3271 3311 -2 * 777 276 58 14 chr12 126117878 126118153 -18164336 - MER102b DNA MER1_type -3 338 52 548 261 16 37 chr12 126118935 126119123 -18163366 + MLT1K LTR MaLR 133 316 -272 304 206 68 0 chr12 126119240 126119313 -18163176 + MLT1K LTR MaLR 511 588 0 512 291 15 0 chr12 126119318 126119452 -18163037 - MIR SINE MIR -57 205 70 321 254 147 40 chr12 126119646 126119823 -18162666 + MIR SINE MIR 20 215 -47 468 280 25 32 chr12 126119887 126120044 -18162445 - L3 LINE CR1 -103 1474 1319 2261 121 0 16 chr12 126120056 126120371 -18162118 - AluSx SINE Alu -2 310 1 185 62 0 31 chr12 126120383 126120415 -18162074 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 216 261 0 0 chr12 126120416 126120462 -18162027 + CT-rich Low_complexity Low_complexity 3 48 0 594 309 32 76 chr12 126120525 126120971 -18161518 + L2 LINE L2 2646 3085 -187 694 305 9 22 chr12 126121518 126121741 -18160748 + MIR SINE MIR 42 261 -1 282 297 66 0 chr12 126121778 126121869 -18160620 + MIR SINE MIR 41 137 -71 337 256 12 0 chr12 126122074 126122160 -18160329 - MER81 DNA DNA -2 112 26 1664 176 20 10 chr12 126122386 126122688 -18159801 - AluJb SINE Alu -1 311 7 279 246 16 0 chr12 126122963 126123024 -18159465 - MIR SINE MIR 0 262 201 911 197 129 0 chr12 126123124 126123317 -18159172 + MER20 DNA MER1_type 1 218 -1 311 266 260 19 chr12 126123322 126123476 -18159013 - MIR SINE MIR -59 203 13 258 298 129 9 chr12 126124299 126124461 -18158028 - MIR SINE MIR 0 262 75 451 295 105 33 chr12 126125023 126125245 -18157244 - MIR SINE MIR -13 249 18 305 232 158 42 chr12 126125711 126125806 -18156683 + MIR SINE MIR 51 156 -106 185 340 0 0 chr12 126125960 126126013 -18156476 + MIR SINE MIR 153 205 -57 1724 170 0 17 chr12 126126042 126126418 -18156071 - AluSq SINE Alu 0 371 1 723 215 57 150 chr12 126126487 126126854 -18155635 + MLT1F1 LTR MaLR 4 361 -206 357 316 102 10 chr12 126126981 126127036 -18155453 - MIR SINE MIR -12 250 201 2319 100 0 0 chr12 126127036 126127326 -18155163 - AluSx SINE Alu -22 290 1 357 316 102 10 chr12 126127326 126127466 -18155023 - MIR SINE MIR -61 201 37 642 310 88 0 chr12 126128393 126128609 -18153880 - MIR SINE MIR -21 241 7 2029 118 7 0 chr12 126128705 126128975 -18153514 - AluSq SINE Alu -39 274 3 419 246 40 37 chr12 126129168 126129331 -18153158 - MIR SINE MIR -56 206 45 2260 93 3 39 chr12 126129332 126129643 -18152846 - AluY SINE Alu -11 300 1 452 299 78 0 chr12 126129749 126129916 -18152573 - MER117 DNA MER1_type 0 197 18 1733 173 3 37 chr12 126129920 126130059 -18152430 + AluJo SINE Alu 1 143 -169 2326 87 0 7 chr12 126130059 126130380 -18152109 + AluY SINE Alu 1 311 0 1733 173 3 37 chr12 126130380 126130563 -18151926 + AluJo SINE Alu 143 312 0 210 37 0 0 chr12 126130569 126130596 -18151893 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 241 319 26 17 chr12 126131413 126131529 -18150960 + MLT1K LTR MaLR 5 121 -467 575 268 14 7 chr12 126131650 126131792 -18150697 + L2 LINE L2 3170 3312 -1 516 218 36 0 chr12 126131884 126131994 -18150495 + MLT1K LTR MaLR 367 480 -108 261 277 114 54 chr12 126132027 126132193 -18150296 - L2 LINE L2 -19 3294 3119 984 157 6 39 chr12 126132205 126132383 -18150106 + AluJb SINE Alu 137 308 -4 647 312 129 16 chr12 126132420 126132808 -18149681 - L2 LINE L2 -338 2976 2545 500 220 116 29 chr12 126133559 126133732 -18148757 + MIR SINE MIR 6 193 -69 615 257 38 54 chr12 126133912 126134011 -18148478 + L1ME3 LINE L1 5895 5994 -168 2058 141 3 10 chr12 126134011 126134315 -18148174 - AluJo SINE Alu -10 302 1 615 257 38 54 chr12 126134315 126134476 -18148013 + L1ME3 LINE L1 5994 6151 -11 529 180 16 0 chr12 126134541 126134669 -18147820 + (TCCA)n Simple_repeat Simple_repeat 3 132 0 546 79 0 0 chr12 126134696 126134772 -18147717 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 326 195 12 0 chr12 126134793 126134888 -18147601 + (TCCA)n Simple_repeat Simple_repeat 1 96 0 466 345 61 29 chr12 126134900 126135242 -18147247 - L2 LINE L2 -6 3266 2914 1556 212 79 60 chr12 126136672 126137205 -18145284 + L1ME2 LINE L1 5320 5862 -302 388 274 6 24 chr12 126137156 126137320 -18145169 + L1MA4 LINE L1 6011 6171 -129 * 970 173 68 21 chr12 126137320 126137361 -18145128 + AluJo SINE Alu 82 120 -192 936 0 0 0 chr12 126137361 126137465 -18145024 + (TAAAA)n Simple_repeat Simple_repeat 2 105 0 970 173 68 21 chr12 126137465 126137614 -18144875 + AluJo SINE Alu 120 281 -31 438 218 23 8 chr12 126137614 126137747 -18144742 + L1MA4 LINE L1 6164 6298 -2 563 234 61 10 chr12 126137751 126137918 -18144571 + L1ME2 LINE L1 5866 6050 -116 2365 113 55 3 chr12 126137918 126138264 -18144225 - THE1B LTR MaLR 0 364 1 563 234 61 10 chr12 126138264 126138283 -18144206 + L1ME2 LINE L1 6050 6067 -99 338 339 59 45 chr12 126138330 126138551 -18143938 + HAL1b LINE L1 552 775 -573 22 56 0 0 chr12 126138576 126138612 -18143877 + AT_rich Low_complexity Low_complexity 1 36 0 311 252 152 46 chr12 126138668 126138819 -18143670 + L1ME LINE L1 5640 5806 -315 211 293 240 0 chr12 126138825 126138900 -18143589 + MIR SINE MIR 53 145 -117 692 277 242 0 chr12 126138902 126139162 -18143327 - L2 LINE L2 0 3313 2991 280 300 80 0 chr12 126139150 126139250 -18143239 - L2 LINE L2 -548 2766 2659 * 1754 197 0 13 chr12 126139323 126139632 -18142857 - AluJo SINE Alu -7 305 1 844 282 60 5 chr12 126140291 126140507 -18141982 + MIR SINE MIR 9 236 -26 180 111 0 0 chr12 126140528 126140555 -18141934 + (TTA)n Simple_repeat Simple_repeat 2 28 0 235 320 188 6 chr12 126140555 126140736 -18141753 + MIR SINE MIR 38 251 -11 2334 121 0 0 chr12 126140756 126141063 -18141426 + AluSx SINE Alu 1 307 -5 660 215 110 25 chr12 126141309 126141472 -18141017 + MIR SINE MIR 21 197 -65 241 316 11 32 chr12 126141487 126141582 -18140907 - L2 LINE L2 -31 3241 3149 404 273 28 49 chr12 126142240 126142383 -18140106 - MIR SINE MIR -56 206 67 1525 264 78 17 chr12 126142471 126142949 -18139540 + MLT1H LTR MaLR 1 549 0 777 188 7 0 chr12 126143140 126143278 -18139211 - MER20 DNA MER1_type -80 139 1 435 269 32 13 chr12 126143574 126143730 -18138759 - LTR16A1 LTR ERVL 0 457 299 404 258 111 6 chr12 126144099 126144276 -18138213 - MIR SINE MIR -27 235 39 1877 124 74 7 chr12 126144282 126144565 -18137924 - AluSx SINE Alu -10 302 1 537 228 17 94 chr12 126145027 126145260 -18137229 - Charlie8 DNA MER1_type -2132 285 71 363 247 59 53 chr12 126145485 126145655 -18136834 + L2 LINE L2 2837 3007 -265 184 231 58 0 chr12 126145797 126145849 -18136640 + L2 LINE L2 3217 3271 -1 284 269 67 25 chr12 126146258 126146377 -18136112 + L2 LINE L2 2970 3093 -179 317 285 41 8 chr12 126146421 126146544 -18135945 + L2 LINE L2 2970 3096 -176 205 138 0 0 chr12 126147300 126147329 -18135160 + (TCC)n Simple_repeat Simple_repeat 3 31 0 187 265 36 60 chr12 126147602 126147685 -18134804 + MER5A DNA MER1_type 81 161 -28 702 190 31 25 chr12 126147880 126148043 -18134446 + L2 LINE L2 3150 3313 0 761 190 6 0 chr12 126148086 126148443 -18134046 + (TGGA)n Simple_repeat Simple_repeat 1 359 0 268 276 52 9 chr12 126148766 126148882 -18133607 - L1ME4a LINE L1 -44 6077 5957 923 253 116 0 chr12 126148932 126149157 -18133332 - MIR SINE MIR -4 258 8 2654 186 65 103 chr12 126149241 126149508 -18132981 + MER97a DNA MER1_type? 1 276 -618 2941 115 16 0 chr12 126149508 126149953 -18132536 - L1MA4A LINE L1 -11 6292 5841 2654 186 65 103 chr12 126149953 126149964 -18132525 + MER97a DNA MER1_type? 276 286 -608 2388 102 0 6 chr12 126149964 126150278 -18132211 - AluSq SINE Alu -1 312 1 2654 186 65 103 chr12 126150278 126150904 -18131585 + MER97a DNA MER1_type? 286 872 -22 225 310 101 13 chr12 126151090 126151248 -18131241 - L1ME4a LINE L1 -285 5885 5714 330 67 0 0 chr12 126151568 126151613 -18130876 + (CA)n Simple_repeat Simple_repeat 1 45 0 291 263 88 0 chr12 126151841 126151921 -18130568 + L2 LINE L2 3136 3222 -50 353 247 60 149 chr12 126151981 126152216 -18130273 - MIR SINE MIR -14 248 35 575 275 86 37 chr12 126152303 126152765 -18129724 + L2 LINE L2 2587 3081 -191 2416 94 0 0 chr12 126152842 126153151 -18129338 + AluSc SINE Alu 1 309 0 249 200 0 0 chr12 126153182 126153227 -18129262 + L2 LINE L2 3269 3313 0 299 311 11 0 chr12 126153597 126153687 -18128802 - MIR SINE MIR -76 132 42 437 275 26 3 chr12 126153717 126153837 -18128652 - MER5A DNA MER1_type -65 113 6 225 78 255 0 chr12 126153951 126154002 -18128487 + AluJ/FRAM SINE Alu 217 280 -22 267 54 0 0 chr12 126154008 126154045 -18128444 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 211 184 0 0 chr12 126154097 126154135 -18128354 - L2 LINE L2 -10 3303 3266 1724 198 62 40 chr12 126154168 126154617 -18127872 - MLT1C LTR MaLR -4 463 5 2463 83 3 0 chr12 126154675 126154976 -18127513 + AluSp SINE Alu 1 302 -11 358 244 33 0 chr12 126156277 126156390 -18126099 + MER5A DNA MER1_type 13 118 -60 450 139 116 0 chr12 126156391 126156477 -18126012 + MER45A DNA AcHobo 83 178 0 356 204 0 126 chr12 126156477 126156580 -18125909 + MER5A DNA MER1_type 100 189 0 426 262 0 0 chr12 126156859 126156981 -18125508 + GA-rich Low_complexity Low_complexity 3 124 0 26 0 0 0 chr12 126157064 126157090 -18125399 + AT_rich Low_complexity Low_complexity 1 26 0 1532 189 0 8 chr12 126157090 126157350 -18125139 - AluJb SINE Alu -7 305 48 2783 80 5 8 chr12 126157350 126157726 -18124763 + THE1C LTR MaLR 1 375 0 342 160 0 0 chr12 126157726 126157776 -18124713 - AluJb SINE Alu -248 52 3 612 253 41 7 chr12 126158071 126158217 -18124272 + MIR SINE MIR 17 167 -95 1619 217 28 31 chr12 126158240 126158640 -18123849 + L1MA9 LINE L1 5852 6253 -59 1945 146 7 0 chr12 126158640 126158952 -18123537 - AluJb SINE Alu 0 314 1 1619 217 28 31 chr12 126158952 126158974 -18123515 + L1MA9 LINE L1 6253 6274 -38 324 263 38 0 chr12 126159491 126159571 -18122918 - MIR SINE MIR -78 184 102 631 259 88 0 chr12 126159988 126160135 -18122354 + MIR SINE MIR 13 172 -90 361 321 88 38 chr12 126160253 126160412 -18122077 + L2 LINE L2 3104 3270 -2 2007 153 3 10 chr12 126160515 126160822 -18121667 - AluJo SINE Alu -7 305 1 187 215 38 0 chr12 126161059 126161138 -18121351 + (TCCA)n Simple_repeat Simple_repeat 2 83 0 476 346 69 45 chr12 126161138 126161470 -18121019 - L2 LINE L2 0 3272 2933 292 250 152 22 chr12 126162144 126162236 -18120253 - L2 LINE L2 -13 3300 3197 1820 172 0 20 chr12 126162284 126162581 -18119908 - AluJb SINE Alu -21 291 1 423 286 39 43 chr12 126162795 126163026 -18119463 + HAL1 LINE L1 2276 2505 -2 1685 177 99 5 chr12 126163108 126163414 -18119075 + Charlie4a DNA MER1_type 17 368 -1593 2407 105 0 0 chr12 126163414 126163718 -18118771 + AluSx SINE Alu 1 304 -8 1685 177 99 5 chr12 126163718 126163795 -18118694 + Charlie4a DNA MER1_type 368 436 -72 2759 105 11 65 chr12 126163799 126163869 -18118620 + L1PA15 LINE L1 5713 5785 -380 1991 143 13 7 chr12 126163869 126164177 -18118312 + AluJb SINE Alu 1 310 -2 2759 105 11 65 chr12 126164177 126164571 -18117918 + L1PA15 LINE L1 5785 6152 -13 992 17 0 0 chr12 126164573 126164691 -18117798 - L1PA3 LINE L1 -298 5857 5740 439 165 25 0 chr12 126164732 126164811 -18117678 + Charlie4a DNA MER1_type 424 504 -4 513 370 17 8 chr12 126165017 126165252 -18117237 - MIR SINE MIR -13 249 13 217 200 0 67 chr12 126165286 126165346 -18117143 - MIR SINE MIR -63 145 90 2057 128 0 20 chr12 126165546 126165843 -18116646 - AluJb SINE Alu -21 291 1 1153 143 0 22 chr12 126166703 126166885 -18115604 + AluJb SINE Alu 134 311 -1 1649 160 21 14 chr12 126166901 126167188 -18115301 + AluJb SINE Alu 11 299 -13 6717 26 0 0 chr12 126167188 126167952 -18114537 + L1PA3 LINE L1 5392 6155 0 22 0 0 0 chr12 126167952 126167974 -18114515 + AT_rich Low_complexity Low_complexity 1 22 0 239 269 25 84 chr12 126168504 126168623 -18113866 + MIR SINE MIR 81 192 -70 370 248 13 0 chr12 126169292 126169413 -18113076 + (TGGA)n Simple_repeat Simple_repeat 3 128 -25 2674 195 72 2 chr12 126169413 126169937 -18112552 + MER68 LTR ERV1 2 562 0 370 248 13 0 chr12 126169937 126169964 -18112525 + (TGGA)n Simple_repeat Simple_repeat 128 153 0 186 286 0 0 chr12 126170021 126170091 -18112398 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 975 141 0 11 chr12 126170127 126170488 -18112001 + (TGGA)n Simple_repeat Simple_repeat 1 358 0 539 195 0 7 chr12 126170507 126170661 -18111828 + (TGGA)n Simple_repeat Simple_repeat 2 154 0 357 24 0 0 chr12 126170662 126170704 -18111785 + (TG)n Simple_repeat Simple_repeat 1 42 0 356 275 6 18 chr12 126171867 126172038 -18110451 + (CA)n Simple_repeat Simple_repeat 1 169 0 235 279 21 21 chr12 126172054 126172194 -18110295 + (CA)n Simple_repeat Simple_repeat 1 140 0 232 161 11 35 chr12 126172215 126172302 -18110187 + (CA)n Simple_repeat Simple_repeat 1 85 0 311 299 17 23 chr12 126172358 126172532 -18109957 + (CA)n Simple_repeat Simple_repeat 1 173 0 185 167 19 0 chr12 126172550 126172604 -18109885 + (CA)n Simple_repeat Simple_repeat 1 55 0 204 192 30 0 chr12 126172661 126172760 -18109729 + (CA)n Simple_repeat Simple_repeat 1 102 0 254 171 14 0 chr12 126172820 126172890 -18109599 + (CA)n Simple_repeat Simple_repeat 1 71 0 227 77 0 26 chr12 126172947 126172986 -18109503 + (CA)n Simple_repeat Simple_repeat 1 38 0 398 307 6 0 chr12 126173179 126173355 -18109134 + (CA)n Simple_repeat Simple_repeat 1 177 0 209 285 9 9 chr12 126173437 126173655 -18108834 + (CA)n Simple_repeat Simple_repeat 1 218 0 202 228 20 0 chr12 126173687 126173788 -18108701 + (CA)n Simple_repeat Simple_repeat 1 103 0 187 269 32 32 chr12 126173902 126173995 -18108494 + L2 LINE L2 1838 1930 -1384 259 280 247 0 chr12 126174075 126174168 -18108321 + L2 LINE L2 3151 3266 -6 437 312 65 26 chr12 126174539 126174782 -18107707 - MIR SINE MIR -7 255 5 395 231 11 11 chr12 126175069 126175160 -18107329 + L2 LINE L2 3182 3272 0 350 211 14 0 chr12 126175665 126175736 -18106753 + MIR SINE MIR 87 158 -104 2067 143 0 13 chr12 126175782 126176097 -18106392 + AluJb SINE Alu 1 311 -1 183 333 29 0 chr12 126176565 126176634 -18105855 + L2 LINE L2 3242 3312 -1 230 364 39 0 chr12 126176736 126176813 -18105676 + L2 LINE L2 3192 3271 -1 378 0 0 0 chr12 126177141 126177183 -18105306 + (CA)n Simple_repeat Simple_repeat 1 42 0 490 293 77 12 chr12 126178813 126179046 -18103443 - MIR SINE MIR -6 256 4 354 295 70 0 chr12 126179046 126179157 -18103332 - MIR SINE MIR -96 166 47 436 161 204 11 chr12 126179273 126179366 -18103123 + MIR3 SINE MIR 11 121 -87 300 280 47 52 chr12 126179519 126179719 -18102770 + MIR SINE MIR 1 199 -63 246 220 136 0 chr12 126179733 126179792 -18102697 - L2 LINE L2 -5 3308 3242 2092 110 43 7 chr12 126179831 126180130 -18102359 + AluSq SINE Alu 1 310 -3 456 222 0 22 chr12 126180266 126180356 -18102133 - L2 LINE L2 -3 3310 3223 2218 107 0 7 chr12 126180895 126181186 -18101303 - AluSx SINE Alu -23 289 1 269 242 180 55 chr12 126181287 126181415 -18101074 + L2 LINE L2 3121 3264 -8 538 223 45 9 chr12 126181505 126181617 -18100872 - L2 LINE L2 -5 3308 3193 1111 169 30 35 chr12 126181628 126181654 -18100835 - AluJo SINE Alu -12 300 275 2772 87 0 8 chr12 126181654 126182020 -18100469 - THE1B LTR MaLR -1 363 1 1111 169 30 35 chr12 126182020 126182194 -18100295 - AluJo SINE Alu -37 275 101 936 197 42 42 chr12 126182267 126182480 -18100009 - MER20 DNA MER1_type -3 216 4 471 273 140 0 chr12 126182484 126182627 -18099862 - MIR SINE MIR -12 250 88 1076 215 59 6 chr12 126182815 126183127 -18099362 - MER33 DNA MER1_type -9 315 1 194 264 132 19 chr12 126183336 126183442 -18099047 + MIR SINE MIR 32 149 -113 755 200 0 7 chr12 126183495 126183640 -18098849 + MER3 DNA MER1_type 66 209 0 1027 237 63 0 chr12 126183743 126184013 -18098476 + L1MEc LINE L1 394 680 -5716 626 203 45 57 chr12 126184017 126184194 -18098295 + MIR SINE MIR 18 192 -70 2229 130 0 0 chr12 126184292 126184585 -18097904 + AluSx SINE Alu 12 304 -8 503 83 0 36 chr12 126184761 126184845 -18097644 - L1MA4A LINE L1 -7 6296 6216 1905 133 4 14 chr12 126185364 126185642 -18096847 + AluSx SINE Alu 1 275 -37 2648 83 14 3 chr12 126185642 126185990 -18096499 + THE1A LTR MaLR 2 353 -2 2374 112 0 3 chr12 126186069 126186382 -18096107 - AluSq SINE Alu -1 312 1 628 283 58 0 chr12 126187426 126187599 -18094890 - MIR SINE MIR -10 252 70 415 284 10 0 chr12 126187743 126187845 -18094644 + MIR SINE MIR 47 149 -113 948 131 151 50 chr12 126188140 126188339 -18094150 - MER20 DNA MER1_type 0 219 1 1964 146 3 7 chr12 126188403 126188711 -18093778 + AluJb SINE Alu 1 307 -5 831 301 14 0 chr12 126188715 126188928 -18093561 + MIR SINE MIR 11 226 -36 533 258 47 55 chr12 126189385 126189592 -18092897 - MIR SINE MIR -3 259 47 215 333 27 18 chr12 126189609 126189720 -18092769 + MIR SINE MIR 109 220 -42 2251 101 10 0 chr12 126189884 126190180 -18092309 - AluSx SINE Alu -1 311 13 593 203 260 9 chr12 126191119 126191346 -18091143 - MLT1H LTR MaLR -265 284 1 296 269 0 43 chr12 126192514 126192607 -18089882 + MIR3 SINE MIR 118 206 -2 208 177 38 101 chr12 126192637 126192716 -18089773 + MER5A DNA MER1_type 1 74 -115 41443 30 24 1 chr12 126193005 126198844 -18083645 - L1HS LINE L1 -181 5974 1 562 150 38 23 chr12 126198874 126199007 -18083482 + LTR33 LTR ERVL 386 520 -1 403 273 89 15 chr12 126199238 126199400 -18083089 + MIR SINE MIR 19 191 -65 550 314 151 24 chr12 126199425 126200021 -18082468 - L2 LINE L2 0 3272 2554 541 245 41 52 chr12 126200106 126200434 -18082055 + MLT1J2 LTR MaLR 64 446 -4 628 281 97 41 chr12 126200438 126200758 -18081731 - L2 LINE L2 -773 2541 2204 190 191 0 24 chr12 126200757 126200799 -18081690 + L2 LINE L2 3271 3311 -2 * 3417 134 33 45 chr12 126201307 126201685 -18080804 - L1MA8 LINE L1 -12 6279 5911 2234 100 3 0 chr12 126201685 126201974 -18080515 - AluSx SINE Alu -22 290 1 3417 134 33 45 chr12 126201974 126202261 -18080228 - L1MA8 LINE L1 -380 5911 5622 192 319 0 0 chr12 126202262 126202309 -18080180 - MIR SINE MIR -198 64 18 2016 167 33 74 chr12 126203060 126203544 -18078945 + MLT1D LTR MaLR 1 464 -41 380 318 130 22 chr12 126203700 126204015 -18078474 + L2 LINE L2 2599 2947 -367 190 224 0 134 chr12 126204148 126204189 -18078300 + L2 LINE L2 3178 3208 -105 2770 77 6 0 chr12 126204189 126204539 -18077950 + THE1A LTR MaLR 3 354 -1 190 224 0 134 chr12 126204539 126204564 -18077925 + L2 LINE L2 3208 3235 -78 630 249 55 11 chr12 126204828 126205009 -18077480 - MER5A DNA MER1_type 0 189 1 1055 257 73 23 chr12 126205083 126205468 -18077021 - L2 LINE L2 -37 3276 2873 2421 83 0 3 chr12 126206265 126206565 -18075924 + AluSc SINE Alu 1 299 -10 631 211 44 126 chr12 126207028 126207346 -18075143 + MER113 DNA MER1_type? 72 363 -158 2094 108 0 83 chr12 126207346 126207670 -18074819 - AluSx SINE Alu -15 297 1 412 104 45 0 chr12 126207673 126207740 -18074749 - L1P4 LINE L1 -384 5782 5713 1685 177 99 5 chr12 126207744 126207821 -18074668 - Charlie4a DNA MER1_type -1525 436 368 2407 105 0 0 chr12 126207821 126208125 -18074364 - AluSx SINE Alu -8 304 1 1685 177 99 5 chr12 126208125 126208431 -18074058 - Charlie4a DNA MER1_type -1593 368 17 423 286 39 43 chr12 126208513 126208744 -18073745 - HAL1 LINE L1 -2 2505 2276 295 262 119 67 chr12 126210277 126210487 -18072002 + L2 LINE L2 2871 3091 -181 284 231 176 0 chr12 126210532 126210623 -18071866 + MIR SINE MIR 81 187 -75 23 54 0 0 chr12 126210954 126210991 -18071498 + AT_rich Low_complexity Low_complexity 1 37 0 1903 139 0 8 chr12 126210999 126211266 -18071223 - AluSx SINE Alu -47 265 1 571 221 90 117 chr12 126211375 126211674 -18070815 + L2 LINE L2 3022 3312 -1 2085 143 0 13 chr12 126211892 126212206 -18070283 - AluJb SINE Alu -2 310 1 350 211 14 0 chr12 126212252 126212323 -18070166 - MIR SINE MIR -104 158 87 395 231 11 11 chr12 126212829 126212920 -18069569 - L2 LINE L2 0 3272 3182 437 312 65 26 chr12 126213207 126213450 -18069039 + MIR SINE MIR 5 255 -7 259 280 247 0 chr12 126213821 126213914 -18068575 - L2 LINE L2 -6 3266 3151 187 269 32 32 chr12 126213994 126214087 -18068402 - L2 LINE L2 -1384 1930 1838 405 290 11 6 chr12 126214201 126214377 -18068112 + (TG)n Simple_repeat Simple_repeat 1 177 0 199 176 15 15 chr12 126214449 126214517 -18067972 + (TG)n Simple_repeat Simple_repeat 1 68 0 398 307 6 0 chr12 126214599 126214775 -18067714 + (TG)n Simple_repeat Simple_repeat 1 177 0 278 229 18 6 chr12 126214968 126215138 -18067351 + (TG)n Simple_repeat Simple_repeat 1 172 0 204 192 30 0 chr12 126215198 126215297 -18067192 + (TG)n Simple_repeat Simple_repeat 1 102 0 615 245 7 7 chr12 126216380 126216519 -18065970 + MER20 DNA MER1_type 1 139 -80 1525 264 78 17 chr12 126216712 126217190 -18065299 - MLT1H LTR MaLR 0 549 1 404 273 28 49 chr12 126217278 126217421 -18065068 + MIR SINE MIR 67 206 -56 346 290 30 0 chr12 126218468 126218637 -18063852 + (TG)n Simple_repeat Simple_repeat 2 175 0 232 161 11 35 chr12 126218756 126218843 -18063646 + (TG)n Simple_repeat Simple_repeat 1 85 0 235 279 21 21 chr12 126218864 126219004 -18063485 + (TG)n Simple_repeat Simple_repeat 1 140 0 356 275 6 18 chr12 126219020 126219191 -18063298 + (TG)n Simple_repeat Simple_repeat 1 169 0 1163 192 55 135 chr12 126219770 126220302 -18062187 + MER97a DNA MER1_type? 384 872 -22 469 276 26 6 chr12 126221475 126221631 -18060858 - LTR16A1 LTR ERVL 0 457 299 280 294 59 0 chr12 126221999 126222101 -18060388 - MIR SINE MIR -27 235 128 27 73 0 0 chr12 126222215 126222270 -18060219 + AT_rich Low_complexity Low_complexity 1 55 0 363 247 59 53 chr12 126222636 126222806 -18059683 - L2 LINE L2 -265 3007 2837 235 165 22 121 chr12 126223031 126223122 -18059367 + Charlie8 DNA MER1_type 71 152 -2265 258 293 0 0 chr12 126223360 126223493 -18058996 + T-rich Low_complexity Low_complexity 1 133 0 24 32 0 0 chr12 126223493 126223524 -18058965 + AT_rich Low_complexity Low_complexity 1 31 0 206 203 0 47 chr12 126223532 126223596 -18058893 + CT-rich Low_complexity Low_complexity 2 62 0 399 100 0 0 chr12 126223937 126224007 -18058482 + (TC)n Simple_repeat Simple_repeat 2 71 0 229 293 35 35 chr12 126224336 126224452 -18058037 + L3 LINE CR1 818 933 -644 267 336 26 0 chr12 126224769 126224882 -18057607 + MIR SINE MIR 147 262 0 201 119 48 0 chr12 126225451 126225493 -18056996 + (TA)n Simple_repeat Simple_repeat 1 44 0 197 122 49 0 chr12 126225637 126225678 -18056811 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 338 237 44 89 chr12 126226040 126226175 -18056314 - MLT1H LTR MaLR 0 549 421 1937 159 0 3 chr12 126226300 126226590 -18055899 + AluJo SINE Alu 1 289 -23 477 290 80 12 chr12 126227074 126227299 -18055190 - MIR SINE MIR -14 248 4 354 295 70 0 chr12 126227299 126227410 -18055079 - MIR SINE MIR -96 166 47 436 161 204 11 chr12 126227526 126227619 -18054870 + MIR3 SINE MIR 11 121 -87 300 280 47 52 chr12 126227772 126227972 -18054517 + MIR SINE MIR 1 199 -63 246 220 136 0 chr12 126227986 126228045 -18054444 - L2 LINE L2 -5 3308 3242 2092 110 43 7 chr12 126228084 126228383 -18054106 + AluSq SINE Alu 1 310 -3 456 222 0 22 chr12 126228519 126228609 -18053880 - L2 LINE L2 -3 3310 3223 2218 107 0 7 chr12 126229148 126229439 -18053050 - AluSx SINE Alu -23 289 1 269 242 180 55 chr12 126229541 126229669 -18052820 + L2 LINE L2 3121 3264 -8 538 223 45 9 chr12 126229759 126229871 -18052618 - L2 LINE L2 -5 3308 3193 1111 169 30 35 chr12 126229882 126229908 -18052581 - AluJo SINE Alu -12 300 275 2772 87 0 8 chr12 126229908 126230274 -18052215 - THE1B LTR MaLR -1 363 1 1111 169 30 35 chr12 126230274 126230448 -18052041 - AluJo SINE Alu -37 275 101 936 197 42 42 chr12 126230521 126230734 -18051755 - MER20 DNA MER1_type -3 216 4 471 273 140 0 chr12 126230738 126230881 -18051608 - MIR SINE MIR -12 250 88 1076 215 59 6 chr12 126231069 126231381 -18051108 - MER33 DNA MER1_type -9 315 1 280 263 161 7 chr12 126231590 126231699 -18050790 + MIR SINE MIR 32 167 -95 886 232 57 0 chr12 126231699 126231893 -18050596 + MER3 DNA MER1_type 5 209 0 280 263 161 7 chr12 126231893 126231920 -18050569 + MIR SINE MIR 167 189 -73 1027 237 63 0 chr12 126231996 126232266 -18050223 + L1MEc LINE L1 394 680 -5716 626 203 45 57 chr12 126232270 126232447 -18050042 + MIR SINE MIR 18 192 -70 2229 130 0 0 chr12 126232545 126232838 -18049651 + AluSx SINE Alu 12 304 -8 503 83 0 36 chr12 126233014 126233098 -18049391 - L1MA4A LINE L1 -7 6296 6216 1905 133 4 14 chr12 126233617 126233895 -18048594 + AluSx SINE Alu 1 275 -37 2648 83 14 3 chr12 126233895 126234243 -18048246 + THE1A LTR MaLR 2 353 -2 2374 112 0 3 chr12 126234322 126234635 -18047854 - AluSq SINE Alu -1 312 1 628 283 58 0 chr12 126235679 126235852 -18046637 - MIR SINE MIR -10 252 70 415 284 10 0 chr12 126235996 126236098 -18046391 + MIR SINE MIR 47 149 -113 948 131 151 50 chr12 126236393 126236592 -18045897 - MER20 DNA MER1_type 0 219 1 1964 146 3 7 chr12 126236656 126236964 -18045525 + AluJb SINE Alu 1 307 -5 831 301 14 0 chr12 126236968 126237181 -18045308 + MIR SINE MIR 11 226 -36 533 258 47 55 chr12 126237638 126237845 -18044644 - MIR SINE MIR -3 259 47 215 333 27 18 chr12 126237862 126237973 -18044516 + MIR SINE MIR 109 220 -42 2157 127 6 16 chr12 126238137 126238451 -18044038 - AluJb SINE Alu -1 311 1 650 218 41 101 chr12 126238478 126238722 -18043767 - MIR SINE MIR -12 250 25 249 216 20 0 chr12 126239019 126239070 -18043419 + MIR SINE MIR 92 143 -119 2092 151 0 10 chr12 126239433 126239745 -18042744 - AluJb SINE Alu -3 309 1 338 237 44 89 chr12 126239870 126240005 -18042484 + MLT1H LTR MaLR 421 549 0 197 122 49 0 chr12 126240367 126240408 -18042081 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 201 119 48 0 chr12 126240552 126240594 -18041895 + (TA)n Simple_repeat Simple_repeat 1 44 0 267 336 26 0 chr12 126241163 126241276 -18041213 - MIR SINE MIR 0 262 147 229 293 35 35 chr12 126241593 126241709 -18040780 - L3 LINE CR1 -644 933 818 399 100 0 0 chr12 126242038 126242108 -18040381 + (GA)n Simple_repeat Simple_repeat 2 71 0 404 286 135 31 chr12 126242380 126242572 -18039917 + L2 LINE L2 2890 3101 -171 257 302 129 14 chr12 126244020 126244159 -18038330 + L3 LINE CR1 1290 1444 -133 298 130 0 0 chr12 126244379 126244425 -18038064 + MER20 DNA MER1_type 32 77 -142 723 184 49 12 chr12 126244709 126244872 -18037617 + MER20 DNA MER1_type 51 219 0 629 293 125 28 chr12 126244894 126245181 -18037308 + L2 LINE L2 2996 3310 -3 320 288 38 53 chr12 126246280 126246412 -18036077 + MIR3 SINE MIR 33 162 -46 476 274 0 0 chr12 126246455 126246568 -18035921 + MER117 DNA MER1_type 85 197 0 313 241 58 0 chr12 126247024 126247111 -18035378 - MER103 DNA DNA -51 115 24 282 235 49 12 chr12 126247234 126247315 -18035174 - L3b LINE CR1 -247 1336 1253 182 231 0 0 chr12 126247897 126247936 -18034553 + MIR SINE MIR 221 259 -3 1763 163 14 0 chr12 126248034 126248310 -18034179 + AluJo SINE Alu 7 286 -26 290 73 49 0 chr12 126248479 126248520 -18033969 - MIR SINE MIR -10 252 210 216 0 0 0 chr12 126249271 126249295 -18033194 + (A)n Simple_repeat Simple_repeat 1 24 0 1670 211 52 12 chr12 126249296 126249704 -18032785 + MLT1C LTR MaLR 34 457 -10 1159 201 8 38 chr12 126249892 126250155 -18032334 + MLT1B LTR MaLR 132 386 -4 247 308 163 29 chr12 126250176 126250348 -18032141 - L3 LINE CR1 -47 1530 1336 876 201 70 4 chr12 126250452 126250681 -18031808 - MER58B DNA MER1_type -24 317 74 191 317 183 0 chr12 126254388 126254492 -18027997 - MIR SINE MIR -14 248 126 478 234 0 0 chr12 126254527 126254621 -18027868 - MIR SINE MIR -121 141 48 389 281 21 0 chr12 126254778 126254874 -18027615 + L2 LINE L2 3215 3312 -1 496 336 41 23 chr12 126255260 126255480 -18027009 - MIR SINE MIR -19 243 20 233 320 13 20 chr12 126255738 126255888 -18026601 + (TATG)n Simple_repeat Simple_repeat 2 150 0 * 242 346 8 0 chr12 126255778 126255911 -18026578 + (TG)n Simple_repeat Simple_repeat 1 134 0 416 140 18 35 chr12 126256956 126257070 -18025419 + (TCCA)n Simple_repeat Simple_repeat 1 112 0 536 159 37 12 chr12 126257110 126257273 -18025216 + (TCCA)n Simple_repeat Simple_repeat 2 168 0 426 165 44 13 chr12 126257315 126257473 -18025016 + (TCCA)n Simple_repeat Simple_repeat 2 164 0 618 258 97 19 chr12 126258631 126259042 -18023447 + L1ME4a LINE L1 5636 6078 -43 252 305 17 107 chr12 126259090 126259213 -18023276 + MIR SINE MIR 46 157 -63 565 289 136 43 chr12 126259808 126259877 -18022612 - MIR SINE MIR -3 259 198 2236 171 149 16 chr12 126259877 126260368 -18022121 + MER74A LTR ERVL 3 558 0 565 289 136 43 chr12 126260368 126260533 -18021956 - MIR SINE MIR -64 198 3 287 322 93 0 chr12 126260696 126260814 -18021675 - MIR SINE MIR -43 219 91 529 305 71 15 chr12 126260830 126261027 -18021462 + MIR SINE MIR 15 222 -40 621 317 144 52 chr12 126261712 126262384 -18020105 + L2 LINE L2 2128 2861 -453 272 277 195 31 chr12 126262466 126262625 -18019864 + L2 LINE L2 2915 3099 -173 1300 194 75 9 chr12 126262716 126263183 -18019306 + MLT1F LTR MaLR 3 529 -13 327 254 14 0 chr12 126263203 126263274 -18019215 + L2 LINE L2 3242 3313 0 496 154 22 11 chr12 126263904 126263995 -18018494 + MER82 DNA MER2_type 3 94 -559 412 312 58 17 chr12 126264032 126264205 -18018284 - MIR SINE MIR -74 188 9 730 247 19 6 chr12 126264246 126264408 -18018081 + MER82 DNA MER2_type 444 607 -46 462 351 192 8 chr12 126264431 126264790 -18017699 - L2 LINE L2 -18 3295 2871 352 239 24 84 chr12 126264805 126264972 -18017517 - L1ME LINE L1 -335 5786 5630 232 211 141 70 chr12 126265272 126265335 -18017154 + MER113 DNA MER1_type? 9 66 -455 889 207 50 5 chr12 126265335 126265458 -18017031 + MER3 DNA MER1_type 1 138 -71 1449 162 6 97 chr12 126265458 126265798 -18016691 - AluJo SINE Alu -3 309 1 889 207 50 5 chr12 126265798 126265872 -18016617 + MER3 DNA MER1_type 138 207 -2 232 211 141 70 chr12 126265872 126265964 -18016525 + MER113 DNA MER1_type? 66 175 -346 1309 153 0 44 chr12 126266451 126266679 -18015810 - MER20 DNA MER1_type -1 218 1 418 230 166 7 chr12 126266885 126267024 -18015465 + MIR SINE MIR 63 223 -39 423 0 0 0 chr12 126267066 126267113 -18015376 + (TG)n Simple_repeat Simple_repeat 2 48 0 192 309 0 0 chr12 126267812 126267867 -18014622 - MIR SINE MIR -129 133 79 180 293 69 0 chr12 126267885 126267943 -18014546 + MER5B DNA MER1_type 43 104 -74 1060 177 0 11 chr12 126267966 126268141 -18014348 + AluJb SINE Alu 136 308 -4 420 167 0 104 chr12 126268165 126268261 -18014228 - MIR SINE MIR -67 195 110 1741 186 40 58 chr12 126268305 126268702 -18013787 + MLT1B LTR MaLR 1 390 0 573 204 167 79 chr12 126269131 126269484 -18013005 + MLT1G LTR MaLR 196 579 -11 22 0 0 0 chr12 126270164 126270186 -18012303 + AT_rich Low_complexity Low_complexity 1 22 0 217 132 0 0 chr12 126270418 126270456 -18012033 + (A)n Simple_repeat Simple_repeat 1 38 0 333 109 0 0 chr12 126270577 126270632 -18011857 + (GA)n Simple_repeat Simple_repeat 1 55 0 404 372 29 25 chr12 126270842 126271081 -18011408 - MIR SINE MIR -6 256 17 213 222 148 49 chr12 126273418 126273499 -18008990 + L2 LINE L2 3184 3272 0 201 255 0 0 chr12 126273505 126273552 -18008937 + L2 LINE L2 3193 3239 -33 676 243 97 24 chr12 126273743 126273949 -18008540 + MIR SINE MIR 14 234 -28 783 252 30 56 chr12 126273953 126274219 -18008270 + MIR SINE MIR 3 261 -1 266 294 24 59 chr12 126274928 126274971 -18007518 + L1ME3A LINE L1 5578 5621 -549 2466 114 22 6 chr12 126274971 126275329 -18007160 + THE1B LTR MaLR 1 364 0 266 294 24 59 chr12 126275329 126275455 -18007034 + L1ME3A LINE L1 5621 5741 -429 1273 198 49 10 chr12 126275455 126275743 -18006746 + MLT1A1 LTR MaLR 1 299 -66 1202 98 0 0 chr12 126275743 126275896 -18006593 - AluSg/x SINE Alu -4 308 156 304 159 63 32 chr12 126275898 126275961 -18006528 + MLT1A1 LTR MaLR 325 389 -1 1035 235 67 67 chr12 126275962 126276396 -18006093 + L1ME3A LINE L1 5737 6170 0 1106 167 9 40 chr12 126276401 126276623 -18005866 + AluJb SINE Alu 87 301 -11 364 219 158 35 chr12 126277289 126277403 -18005086 + MIR SINE MIR 17 144 -118 192 268 0 54 chr12 126277412 126277468 -18005021 - MIR SINE MIR 0 262 210 423 194 117 117 chr12 126277498 126277624 -18004865 + MER104 DNA Tc2 1 129 -1769 884 158 0 0 chr12 126277624 126277751 -18004738 - FLAM_C SINE Alu -6 127 1 423 194 117 117 chr12 126277751 126277804 -18004685 + MER104 DNA Tc2 128 180 0 235 204 41 0 chr12 126277804 126277853 -18004636 - MIR SINE MIR -111 151 101 3417 134 33 45 chr12 126277867 126278245 -18004244 - L1MA8 LINE L1 -12 6279 5911 2279 100 0 0 chr12 126278245 126278535 -18003954 - AluSx SINE Alu -22 290 1 3417 134 33 45 chr12 126278535 126278822 -18003667 - L1MA8 LINE L1 -380 5911 5622 192 319 0 0 chr12 126278823 126278870 -18003619 - MIR SINE MIR -198 64 18 2016 167 33 74 chr12 126279621 126280105 -18002384 + MLT1D LTR MaLR 1 464 -41 403 319 105 13 chr12 126280281 126280519 -18001970 + L2 LINE L2 2630 2889 -425 233 197 0 136 chr12 126280711 126280751 -18001738 + L2 LINE L2 3138 3167 -105 2808 77 3 0 chr12 126280751 126281102 -18001387 + THE1A LTR MaLR 3 354 -1 233 197 0 136 chr12 126281102 126281127 -18001362 + L2 LINE L2 3167 3194 -78 630 249 55 11 chr12 126281391 126281572 -18000917 - MER5A DNA MER1_type 0 189 1 1055 257 73 23 chr12 126281646 126282031 -18000458 - L2 LINE L2 -37 3276 2873 2412 84 0 3 chr12 126282829 126283128 -17999361 + AluSc SINE Alu 1 298 -11 635 209 41 136 chr12 126283591 126283909 -17998580 + MER113 DNA MER1_type? 72 358 -163 2065 111 0 83 chr12 126283909 126284233 -17998256 - AluSx SINE Alu -15 297 1 635 209 41 136 chr12 126284233 126284253 -17998236 + MER113 DNA MER1_type? 358 378 -143 221 281 22 34 chr12 126284269 126284358 -17998131 - L2 LINE L2 -72 3241 3154 190 371 0 9 chr12 126284567 126284672 -17997817 - MIR SINE MIR -4 258 155 362 295 70 39 chr12 126284702 126284831 -17997658 + MIR SINE MIR 15 147 -115 2628 109 28 14 chr12 126285660 126286019 -17996470 + THE1B LTR MaLR 1 364 0 266 262 58 78 chr12 126286259 126286465 -17996024 + L1ME4a LINE L1 5920 6121 0 212 319 83 44 chr12 126287243 126287408 -17995081 - MIR SINE MIR -36 172 2 461 281 63 43 chr12 126287417 126287670 -17994819 - MIR SINE MIR 0 262 5 246 326 41 0 chr12 126287750 126287848 -17994641 - MIR SINE MIR -69 193 92 1735 192 24 6 chr12 126288074 126288407 -17994082 + MER58B DNA MER1_type 3 341 0 204 181 169 48 chr12 126288564 126288647 -17993842 - L2 LINE L2 0 3272 3180 219 355 12 24 chr12 126289202 126289371 -17993118 + (TATG)n Simple_repeat Simple_repeat 4 170 0 748 167 13 84 chr12 126289532 126289759 -17992730 + L1MB7 LINE L1 5974 6184 0 316 327 29 0 chr12 126290178 126290282 -17992207 + MIR SINE MIR 1 107 -155 462 250 67 78 chr12 126290349 126290761 -17991728 + MLT1J2 LTR MaLR 1 428 -11 2785 130 21 5 chr12 126291826 126292257 -17990232 - L1PB3 LINE L1 -7 6147 5710 313 292 140 12 chr12 126292516 126292687 -17989802 + MIR SINE MIR 52 244 -18 259 356 107 36 chr12 126292763 126293156 -17989333 + L2 LINE L2 2852 3272 0 231 272 0 22 chr12 126293851 126293943 -17988546 + L1MC4 LINE L1 6614 6703 -1339 395 177 44 97 chr12 126293959 126294072 -17988417 + MER5B DNA MER1_type 72 178 0 283 325 33 8 chr12 126294224 126294344 -17988145 - MIR SINE MIR -89 173 51 428 309 8 0 chr12 126295506 126295629 -17986860 + (TGGG)n Simple_repeat Simple_repeat 3 126 0 281 268 11 22 chr12 126295636 126295815 -17986674 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 479 192 16 33 chr12 126295835 126296017 -17986472 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 205 356 10 0 chr12 126296032 126296133 -17986356 + (TGGA)n Simple_repeat Simple_repeat 1 102 0 275 294 78 27 chr12 126296207 126296355 -17986134 - MIR3 SINE MIR -64 144 12 203 271 17 17 chr12 126297279 126297338 -17985151 + MIR SINE MIR 204 262 0 500 282 26 26 chr12 126297418 126297574 -17984915 - MIR3 SINE MIR -41 167 12 1962 141 0 3 chr12 126297653 126297958 -17984531 + AluJb SINE Alu 1 304 -8 596 258 6 48 chr12 126297981 126298148 -17984341 - MIR SINE MIR -9 253 94 455 293 181 28 chr12 126298514 126298729 -17983760 + MIR SINE MIR 2 249 -13 458 286 171 31 chr12 126299276 126299469 -17983020 + L2 LINE L2 1943 2108 -1206 1017 135 10 57 chr12 126299469 126299661 -17982828 + MER5A DNA MER1_type 4 186 -3 458 286 171 31 chr12 126299661 126299852 -17982637 + L2 LINE L2 2108 2381 -933 206 273 18 0 chr12 126300085 126300140 -17982349 - L2 LINE L2 -15 3298 3243 201 176 59 39 chr12 126300953 126301004 -17981485 - MIR SINE MIR -91 171 120 192 250 0 88 chr12 126300965 126301033 -17981456 + MIR SINE MIR 115 176 -86 * 386 329 61 73 chr12 126301445 126301603 -17980886 + L2 LINE L2 2686 2837 -435 1872 145 3 13 chr12 126301603 126301906 -17980583 - AluJb SINE Alu -12 300 1 386 329 61 73 chr12 126301906 126302067 -17980422 + L2 LINE L2 2837 2998 -274 189 361 84 12 chr12 126302166 126302249 -17980240 + L2 LINE L2 3155 3243 -29 448 264 72 96 chr12 126302492 126302700 -17979789 - L2 LINE L2 -1 3312 3110 2063 128 0 0 chr12 126302702 126302999 -17979490 + AluSx SINE Alu 1 297 -15 528 286 48 58 chr12 126303061 126303372 -17979117 + L2 LINE L2 2014 2321 -993 251 293 73 0 chr12 126303374 126303456 -17979033 - MIR SINE MIR -142 120 33 230 81 27 0 chr12 126303571 126303608 -17978881 + (TTA)n Simple_repeat Simple_repeat 3 40 0 345 322 59 20 chr12 126303628 126303780 -17978709 - MIR SINE MIR -10 252 95 1278 248 88 22 chr12 126303926 126304334 -17978155 + MLT1J2 LTR MaLR 16 450 0 407 243 26 1 chr12 126304337 126304461 -17978028 + HAL1b LINE L1 1188 1307 -41 201 158 26 0 chr12 126304647 126304685 -17977804 + (ATG)n Simple_repeat Simple_repeat 1 39 0 681 317 73 26 chr12 126305691 126306178 -17976311 + L2 LINE L2 2734 3304 -9 605 263 69 0 chr12 126306399 126306574 -17975915 - MER5A DNA MER1_type 0 189 3 285 98 0 0 chr12 126306828 126306869 -17975620 + (TG)n Simple_repeat Simple_repeat 1 41 0 259 253 195 39 chr12 126306968 126307122 -17975367 - MER5A DNA MER1_type 0 189 1 385 242 20 30 chr12 126307228 126307327 -17975162 + MIR SINE MIR 57 154 -108 184 343 0 0 chr12 126307777 126307850 -17974639 + L2 LINE L2 2716 2788 -526 783 162 172 59 chr12 126307894 126308068 -17974421 + MER20 DNA MER1_type 27 219 0 206 177 38 101 chr12 126308225 126308304 -17974185 - MER5A DNA MER1_type -115 74 1 293 269 0 43 chr12 126308334 126308427 -17974062 - MIR3 SINE MIR -2 206 118 656 217 325 29 chr12 126309595 126310014 -17972475 + MLT1H LTR MaLR 1 543 -6 2020 109 3 0 chr12 126310761 126311045 -17971444 + AluSp SINE Alu 13 297 -16 1107 231 0 4 chr12 126311052 126311277 -17971212 + MER58A DNA MER1_type 1 224 0 215 350 146 8 chr12 126311277 126311400 -17971089 - MIR3 SINE MIR -48 160 21 1794 147 0 10 chr12 126311445 126311737 -17970752 + AluJo SINE Alu 6 294 -18 219 253 105 42 chr12 126312446 126312541 -17969948 - MIR3 SINE MIR -6 202 102 323 229 12 60 chr12 126312553 126312636 -17969853 - MER81 DNA DNA -12 102 24 187 300 0 33 chr12 126312644 126312704 -17969785 - MIR3 SINE MIR -136 72 15 430 234 80 7 chr12 126312998 126313135 -17969354 + MIR SINE MIR 81 227 -35 341 267 26 26 chr12 126313129 126313245 -17969244 + MER5A DNA MER1_type 24 139 -50 * 689 33 11 0 chr12 126314339 126314431 -17968058 + (CA)n Simple_repeat Simple_repeat 2 94 0 287 296 68 45 chr12 126314663 126314795 -17967694 - L2 LINE L2 0 3313 3179 423 0 0 0 chr12 126315010 126315057 -17967432 + (TG)n Simple_repeat Simple_repeat 1 47 0 1953 126 3 0 chr12 126316282 126316575 -17965914 - AluSx SINE Alu -18 294 1 440 268 116 41 chr12 126316614 126316783 -17965706 + L1ME4a LINE L1 5660 5815 -306 1893 137 0 56 chr12 126316783 126317105 -17965384 + AluJb SINE Alu 4 307 -5 440 268 116 41 chr12 126317105 126317344 -17965145 + L1ME4a LINE L1 5815 6110 -11 1083 211 14 18 chr12 126317353 126317576 -17964913 - MER58A DNA MER1_type 0 224 3 2127 176 121 13 chr12 126319197 126319652 -17962837 - MLT1D LTR MaLR -1 504 1 424 299 146 0 chr12 126319996 126320140 -17962349 + MIR SINE MIR 7 171 -91 189 355 65 0 chr12 126320358 126320451 -17962038 + L2 LINE L2 3169 3267 -5 321 251 96 54 chr12 126321216 126321383 -17961106 + L2 LINE L2 2650 2823 -491 554 285 5 55 chr12 126321559 126321661 -17960828 + L2 LINE L2 3124 3213 -100 2288 178 77 23 chr12 126321661 126322140 -17960349 + MLT1D LTR MaLR 1 505 0 554 285 5 55 chr12 126322140 126322237 -17960252 + L2 LINE L2 3213 3313 0 513 293 36 24 chr12 126322317 126322484 -17960005 - L2 LINE L2 0 3272 3104 405 0 0 0 chr12 126322665 126322710 -17959779 + (TG)n Simple_repeat Simple_repeat 2 46 0 394 261 70 21 chr12 126322878 126323020 -17959469 - MIR SINE MIR -112 150 2 538 273 72 63 chr12 126323636 126323991 -17958498 - L1ME4a LINE L1 -165 5956 5595 2086 137 0 0 chr12 126323991 126324297 -17958192 + AluSx SINE Alu 1 306 -6 538 273 72 63 chr12 126324297 126324355 -17958134 - L1ME4a LINE L1 -526 5595 5539 979 274 16 0 chr12 126324493 126324738 -17957751 - MIR SINE MIR -6 256 8 1183 189 0 0 chr12 126325663 126325864 -17956625 + MER3 DNA MER1_type 9 209 0 250 261 15 0 chr12 126326166 126326231 -17956258 - MIR3 SINE MIR -14 194 129 407 243 63 9 chr12 126326500 126326611 -17955878 + MIR SINE MIR 98 214 -48 1570 200 68 91 chr12 126327507 126327978 -17954511 + MLT1C LTR MaLR 6 465 -2 539 301 43 6 chr12 126327980 126328143 -17954346 + MIR SINE MIR 23 191 -71 247 247 0 24 chr12 126328146 126328231 -17954258 + GA-rich Low_complexity Low_complexity 2 84 0 328 286 0 23 chr12 126328244 126328415 -17954074 + GA-rich Low_complexity Low_complexity 2 168 0 279 259 94 0 chr12 126328916 126328934 -17953555 + MIR SINE MIR 103 118 -144 1498 195 9 28 chr12 126328934 126329252 -17953237 - AluJb SINE Alu 0 312 1 279 259 94 0 chr12 126329252 126329318 -17953171 + MIR SINE MIR 118 195 -67 3622 156 140 90 chr12 126329401 126329726 -17952763 - L1MD2 LINE L1 -2 6751 6444 619 232 0 32 chr12 126329726 126329851 -17952638 - FLAM_A SINE Alu -11 122 2 3622 156 140 90 chr12 126329851 126330485 -17952004 - L1MD2 LINE L1 -309 6444 5744 813 224 19 39 chr12 126330483 126330742 -17951747 - L1MD2 LINE L1 -1380 5160 4907 * 1958 197 36 25 chr12 126330744 126331190 -17951299 - MLT1C LTR MaLR -1 466 16 3831 225 68 36 chr12 126331203 126331398 -17951091 - L1MD2 LINE L1 -1628 4912 4725 2144 123 0 3 chr12 126331398 126331699 -17950790 + AluSg SINE Alu 1 300 -10 3831 225 68 36 chr12 126331699 126332762 -17949727 - L1MD2 LINE L1 -1815 4725 3614 * 10386 189 91 22 chr12 126332746 126334875 -17947614 - L1MD2 LINE L1 -4054 2486 504 2034 110 10 10 chr12 126334875 126335167 -17947322 + AluSg SINE Alu 1 292 -18 10386 189 91 22 chr12 126335167 126335288 -17947201 - L1MD2 LINE L1 -6036 504 393 2713 146 5 27 chr12 126335288 126335732 -17946757 + Tigger2a DNA MER2_type 1 434 0 10386 189 91 22 chr12 126335732 126335787 -17946702 - L1MD2 LINE L1 -6147 393 22 349 295 72 14 chr12 126336537 126336676 -17945813 + L2 LINE L2 3125 3271 -1 235 246 0 29 chr12 126336843 126336912 -17945577 + GA-rich Low_complexity Low_complexity 2 68 0 394 269 46 39 chr12 126337155 126337285 -17945204 - MIR3 SINE MIR -12 196 66 410 184 7 40 chr12 126338243 126338395 -17944094 + CT-rich Low_complexity Low_complexity 2 148 0 523 301 61 15 chr12 126338449 126338645 -17943844 - MIR SINE MIR -50 212 8 332 314 0 25 chr12 126339253 126339371 -17943118 - MIR SINE MIR 0 262 148 1900 206 75 31 chr12 126339390 126339721 -17942768 + MLT1G LTR MaLR 12 409 -181 1318 169 52 0 chr12 126339721 126339934 -17942555 - MER58A DNA MER1_type 0 224 1 1900 206 75 31 chr12 126339934 126340125 -17942364 + MLT1G LTR MaLR 409 590 0 419 263 17 17 chr12 126340126 126340244 -17942245 - MIR SINE MIR -117 145 28 569 266 49 30 chr12 126340354 126340557 -17941932 - L2 LINE L2 -455 2859 2653 2222 136 15 98 chr12 126340669 126341140 -17941349 + MSTB1 LTR MaLR 1 432 0 2526 107 31 8 chr12 126341536 126341892 -17940597 + THE1B LTR MaLR 1 364 0 193 237 0 0 chr12 126342853 126342891 -17939598 + L2 LINE L2 3266 3303 -10 254 28 0 28 chr12 126343007 126343043 -17939446 + (TTG)n Simple_repeat Simple_repeat 2 36 0 555 256 108 66 chr12 126343898 126343944 -17938545 + MER102a DNA MER1_type 62 105 -1312 2102 109 0 10 chr12 126343944 126344248 -17938241 + AluSg SINE Alu 1 301 -9 555 256 108 66 chr12 126344248 126344459 -17938030 + MER102a DNA MER1_type 105 330 0 688 172 159 13 chr12 126344467 126344624 -17937865 - MER5A DNA MER1_type 0 189 10 747 190 178 0 chr12 126344643 126344817 -17937672 + MER3 DNA MER1_type 4 208 -1 225 238 0 0 chr12 126345657 126345699 -17936790 + (TGGG)n Simple_repeat Simple_repeat 1 42 0 755 188 8 8 chr12 126345699 126346178 -17936311 + (TGGA)n Simple_repeat Simple_repeat 1 479 0 397 276 102 0 chr12 126346487 126346585 -17935904 - MIR SINE MIR -62 200 93 683 196 89 45 chr12 126347165 126347344 -17935145 + MER5A DNA MER1_type 1 187 -2 504 227 74 45 chr12 126347485 126347691 -17934798 - MER113 DNA MER1_type? -54 467 268 2303 171 55 0 chr12 126347691 126348095 -17934394 + MSTB LTR MaLR 1 426 0 504 227 74 45 chr12 126348095 126348279 -17934210 - MER113 DNA MER1_type? -253 268 6 657 253 93 6 chr12 126348411 126348593 -17933896 - MIR SINE MIR 0 262 65 285 261 201 47 chr12 126348952 126349186 -17933303 - L2 LINE L2 -1 3312 3043 209 300 50 38 chr12 126350206 126350286 -17932203 - MER5A DNA MER1_type -18 171 91 752 276 5 10 chr12 126350450 126350649 -17931840 + MIR SINE MIR 47 244 -18 835 239 125 18 chr12 126350789 126351061 -17931428 + LTR16C LTR ERVL 191 491 0 2478 102 20 28 chr12 126353015 126353217 -17929272 - L1PA13 LINE L1 0 6163 5964 1856 103 11 0 chr12 126353217 126353479 -17929010 - AluSx SINE Alu -47 265 1 2478 102 20 28 chr12 126353479 126353670 -17928819 - L1PA13 LINE L1 -199 5964 5773 317 341 30 45 chr12 126353738 126353870 -17928619 - L2 LINE L2 0 3272 3143 787 309 47 44 chr12 126354041 126354381 -17928108 - L2 LINE L2 0 3272 2932 748 298 33 16 chr12 126355534 126355776 -17926713 + MIR SINE MIR 9 254 -8 186 103 0 0 chr12 126355776 126355805 -17926684 + (CAT)n Simple_repeat Simple_repeat 1 29 0 410 222 12 0 chr12 126356716 126356797 -17925692 + MER81 DNA DNA 31 112 -2 1252 134 9 54 chr12 126357004 126357064 -17925425 + MER20 DNA MER1_type 2 63 -156 2356 52 0 0 chr12 126357064 126357351 -17925138 - AluY SINE Alu -14 297 11 1252 134 9 54 chr12 126357351 126357513 -17924976 + MER20 DNA MER1_type 63 214 -5 379 296 28 9 chr12 126357828 126357936 -17924553 - MIR SINE MIR -83 125 16 1040 250 30 33 chr12 126357943 126358035 -17924454 - LTR16A1 LTR ERVL 0 457 366 2074 130 0 0 chr12 126358035 126358335 -17924154 + AluSx SINE Alu 1 300 -12 1040 250 30 33 chr12 126358335 126358542 -17923947 - LTR16A1 LTR ERVL -91 366 159 343 236 90 42 chr12 126359168 126359312 -17923177 + L2 LINE L2 2903 3053 -219 337 365 45 11 chr12 126359351 126359529 -17922960 - MER5A DNA MER1_type 0 189 6 196 270 127 0 chr12 126359536 126359599 -17922890 + L2 LINE L2 3153 3223 -49 228 135 0 0 chr12 126359759 126359796 -17922693 + (A)n Simple_repeat Simple_repeat 1 37 0 192 246 0 15 chr12 126360221 126360286 -17922203 + L3b LINE CR1 1324 1387 -196 315 280 217 21 chr12 126360440 126360583 -17921906 - MIR SINE MIR -86 176 6 2223 105 0 3 chr12 126360584 126360888 -17921601 - AluSx SINE Alu -9 303 1 838 208 0 56 chr12 126361122 126361319 -17921170 + MER5A DNA MER1_type 3 188 -1 213 200 0 0 chr12 126361371 126361411 -17921078 - MER5A DNA MER1_type -1 188 149 1939 156 53 12 chr12 126361412 126361752 -17920737 - THE1B LTR MaLR 0 364 11 520 169 0 0 chr12 126361781 126361870 -17920619 - MER5A DNA MER1_type -83 106 18 189 0 0 0 chr12 126361952 126361973 -17920516 + (A)n Simple_repeat Simple_repeat 1 21 0 734 239 86 71 chr12 126362082 126362350 -17920139 + L2 LINE L2 3041 3312 -1 377 367 30 12 chr12 126362902 126363071 -17919418 - MIR SINE MIR -73 189 18 1575 181 3 23 chr12 126363564 126363863 -17918626 - AluJo SINE Alu -19 293 1 768 159 0 15 chr12 126363882 126364014 -17918475 - AluJb SINE Alu -181 131 2 705 273 10 19 chr12 126364485 126364563 -17917926 - MIR SINE MIR -32 230 153 2004 165 33 30 chr12 126364563 126364926 -17917563 - THE1B LTR MaLR 0 364 1 705 273 10 19 chr12 126364926 126365052 -17917437 - MIR SINE MIR -109 153 28 237 284 193 9 chr12 126365198 126365307 -17917182 + MIR SINE MIR 18 146 -62 1911 112 10 35 chr12 126365371 126365684 -17916805 + AluSx SINE Alu 1 305 -7 619 191 262 38 chr12 126365717 126365900 -17916589 + MER58A DNA MER1_type 1 224 0 834 264 46 5 chr12 126366349 126366559 -17915930 + MIR SINE MIR 41 258 -4 283 257 108 0 chr12 126366593 126366667 -17915822 - L2 LINE L2 0 3313 3232 194 341 57 16 chr12 126368316 126368439 -17914050 + L2 LINE L2 3087 3214 -58 818 208 159 5 chr12 126368927 126369134 -17913355 - MIR SINE MIR -14 248 10 649 308 11 0 chr12 126369671 126369856 -17912633 - MIR SINE MIR -12 250 64 1007 193 0 6 chr12 126370159 126370525 -17911964 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 233 264 19 0 chr12 126370527 126370580 -17911909 + (TGGG)n Simple_repeat Simple_repeat 1 54 0 460 312 133 0 chr12 126371512 126371685 -17910804 + MER117 DNA MER1_type 2 197 0 228 302 151 12 chr12 126371685 126371771 -17910718 + L2 LINE L2 3167 3264 -8 432 277 92 33 chr12 126371782 126371967 -17910522 - MIR SINE MIR -1 261 67 1021 181 91 15 chr12 126372024 126372098 -17910391 + MER20 DNA MER1_type 6 73 -146 279 54 0 0 chr12 126372098 126372135 -17910354 + (TG)n Simple_repeat Simple_repeat 2 38 0 1021 181 91 15 chr12 126372135 126372259 -17910230 + MER20 DNA MER1_type 73 219 0 374 74 62 0 chr12 126373323 126373356 -17909133 + GA-rich Low_complexity Low_complexity 3 33 -55 2094 110 16 3 chr12 126373356 126373665 -17908824 + AluSq SINE Alu 1 313 0 374 74 62 0 chr12 126373665 126373712 -17908777 + GA-rich Low_complexity Low_complexity 33 88 0 193 280 69 116 chr12 126373739 126373928 -17908561 - MIR SINE MIR -26 236 57 304 306 92 10 chr12 126373965 126374063 -17908426 - MIR SINE MIR -113 149 44 2465 174 42 19 chr12 126374208 126374680 -17907809 + MLT1D LTR MaLR 23 505 0 208 307 149 9 chr12 126374680 126374794 -17907695 - L2 LINE L2 -28 3285 3156 221 319 106 9 chr12 126375476 126375589 -17906900 + L2 LINE L2 3149 3272 0 216 219 37 73 chr12 126375718 126375800 -17906689 - MIR SINE MIR -68 194 116 386 268 38 27 chr12 126375811 126375958 -17906531 + MIR SINE MIR 75 218 -44 297 192 177 69 chr12 126376008 126376138 -17906351 - MIR SINE MIR -71 191 48 21 0 0 0 chr12 126376349 126376370 -17906119 + AT_rich Low_complexity Low_complexity 1 21 0 571 254 134 18 chr12 126377393 126377610 -17904879 + MIR SINE MIR 21 262 0 844 221 133 0 chr12 126377702 126377897 -17904592 + MER58A DNA MER1_type 4 224 0 189 182 23 23 chr12 126377951 126377995 -17904494 + MIR SINE MIR 34 77 -185 238 237 124 21 chr12 126378071 126378168 -17904321 - MIR SINE MIR -70 192 86 1942 121 0 17 chr12 126378781 126379071 -17903418 + AluSx SINE Alu 9 293 -19 1692 158 20 3 chr12 126379173 126379465 -17903024 - AluSq SINE Alu -16 297 1 355 279 174 0 chr12 126380619 126380791 -17901698 + MIR SINE MIR 46 247 -15 953 211 58 5 chr12 126381805 126382013 -17900476 + MER20 DNA MER1_type 1 219 0 222 37 0 0 chr12 126382280 126382307 -17900182 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2762 13 3 0 chr12 126382389 126382703 -17899786 - AluYb8 SINE Alu -3 315 1 230 302 105 12 chr12 126382909 126382995 -17899494 + MLT1K LTR MaLR 120 213 -375 275 161 18 0 chr12 126383059 126383115 -17899374 + C-rich Low_complexity Low_complexity 1 57 0 2596 89 29 9 chr12 126383115 126383464 -17899025 - THE1B LTR MaLR -8 356 1 273 136 15 91 chr12 126384252 126384318 -17898171 + MLT1D LTR MaLR 1 61 -444 327 96 77 0 chr12 126384327 126384379 -17898110 - MADE1 DNA Mariner -24 56 1 * 959 233 22 22 chr12 126384379 126384767 -17897722 + MLT1D LTR MaLR 68 501 -4 326 244 229 15 chr12 126384878 126385009 -17897480 - MIR SINE MIR -13 249 91 5554 81 53 5 chr12 126385031 126385819 -17896670 - L1PB2 LINE L1 0 6151 5326 237 158 0 0 chr12 126386173 126386211 -17896278 - MADE1 DNA Mariner -42 38 1 524 200 97 76 chr12 126386355 126386540 -17895949 - MER5A DNA MER1_type 0 189 1 1036 205 5 31 chr12 126386550 126386774 -17895715 - MER20 DNA MER1_type -1 218 1 329 291 13 0 chr12 126388103 126388182 -17894307 + MIR SINE MIR 32 111 -151 292 226 0 0 chr12 126388195 126388248 -17894241 + L2 LINE L2 3248 3300 -13 1594 178 78 78 chr12 126388356 126388818 -17893671 + MLT1C LTR MaLR 6 467 0 994 190 5 5 chr12 126388945 126389129 -17893360 - MER58B DNA MER1_type -7 334 151 1065 114 202 10 chr12 126389709 126389902 -17892587 - MER30 DNA MER1_type 0 230 1 665 284 47 4 chr12 126390716 126390952 -17891537 - MER58 DNA MER1_type -65 276 31 2397 182 9 40 chr12 126390962 126391490 -17890999 - L1MB5 LINE L1 -2 6172 5661 2221 183 54 48 chr12 126391490 126391988 -17890501 + MER72-int LTR ERV1 5888 6388 -370 1858 185 33 17 chr12 126392061 126392423 -17890066 + MER72-int LTR ERV1 6391 6758 0 4440 142 19 7 chr12 126392423 126393108 -17889381 + MER72 LTR ERV1 1 693 -29 630 113 9 70 chr12 126393132 126393247 -17889242 - L1MB5 LINE L1 -512 5668 5561 26 30 0 0 chr12 126393439 126393472 -17889017 + AT_rich Low_complexity Low_complexity 1 33 0 865 241 42 47 chr12 126393542 126393778 -17888711 - Charlie8 DNA MER1_type -2156 261 27 669 250 22 40 chr12 126394097 126394130 -17888359 + L1MC3 LINE L1 5592 5624 -2161 1579 79 14 9 chr12 126394130 126394345 -17888144 - L1PA10 LINE L1 -3 6165 5950 2528 62 0 0 chr12 126394345 126394666 -17887823 + L1PA10 LINE L1 5621 5941 -227 960 182 7 5 chr12 126395001 126395574 -17886915 + CT-rich Low_complexity Low_complexity 1 573 0 243 247 43 43 chr12 126395848 126395941 -17886548 + L2 LINE L2 3153 3245 -27 204 241 173 68 chr12 126396085 126396218 -17886271 - MIR SINE MIR -93 169 23 471 35 0 0 chr12 126396384 126396441 -17886048 + (GGAGA)n Simple_repeat Simple_repeat 1 57 0 364 279 95 3 chr12 126396804 126396945 -17885544 + MIR SINE MIR 13 160 -70 612 167 65 114 chr12 126397291 126397537 -17884952 - ORSL DNA AcHobo -20 255 22 600 211 101 48 chr12 126397883 126398091 -17884398 + MIR SINE MIR 30 248 -14 1518 184 11 87 chr12 126398145 126398445 -17884044 + MER58B DNA MER1_type 1 269 -2151 686 271 79 5 chr12 126398445 126398648 -17883841 - MER20 DNA MER1_type -1 218 1 1518 184 11 87 chr12 126398648 126398716 -17883773 + MER58B DNA MER1_type 269 341 0 572 291 35 39 chr12 126398907 126399192 -17883297 + L1MB3 LINE L1 5540 5823 -298 1947 124 30 27 chr12 126399201 126399499 -17882990 + AluJb SINE Alu 1 299 -13 204 97 0 0 chr12 126399571 126399602 -17882887 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 201 121 0 0 chr12 126400174 126400207 -17882282 + (CA)n Simple_repeat Simple_repeat 1 33 0 2539 107 0 33 chr12 126400519 126400868 -17881621 + L1MB3 LINE L1 5805 6141 -42 2258 86 3 7 chr12 126400868 126401160 -17881329 + AluSc SINE Alu 3 293 -16 2539 107 0 33 chr12 126401160 126401202 -17881287 + L1MB3 LINE L1 6141 6183 0 569 259 92 56 chr12 126401378 126401462 -17881027 + L1ME2 LINE L1 5333 5412 -730 1840 147 67 28 chr12 126401462 126401823 -17880666 + THE1C LTR MaLR 1 375 0 569 259 92 56 chr12 126401823 126402052 -17880437 + L1ME2 LINE L1 5412 5660 -482 387 0 0 0 chr12 126403958 126404001 -17878488 + (CA)n Simple_repeat Simple_repeat 2 44 0 1774 183 21 21 chr12 126404291 126404629 -17877860 + MLT1F LTR MaLR 205 542 0 1798 137 0 29 chr12 126404641 126404919 -17877570 + AluJb SINE Alu 28 297 -15 28 0 0 0 chr12 126404960 126404988 -17877501 + AT_rich Low_complexity Low_complexity 1 28 0 1344 247 29 15 chr12 126405231 126405571 -17876918 + LTR16A LTR ERVL 106 450 0 189 121 0 0 chr12 126405639 126405672 -17876817 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 761 250 61 59 chr12 126405742 126406186 -17876303 - L1ME LINE L1 -4834 1706 1262 1276 221 28 12 chr12 126406234 126406555 -17875934 + L1ME2 LINE L1 5787 6112 -52 272 257 147 15 chr12 126406461 126406597 -17875892 + L1MA10 LINE L1 6180 6333 -1 * 240 156 22 0 chr12 126406992 126407037 -17875452 - L1ME LINE L1 -5737 793 748 2189 126 19 46 chr12 126407251 126407624 -17874865 + THE1B LTR MaLR 1 363 -1 267 264 58 58 chr12 126407639 126407773 -17874716 - L1ME LINE L1 -5959 571 455 3415 50 0 0 chr12 126407954 126408370 -17874119 - L1PA4 LINE L1 0 6155 5740 608 217 43 7 chr12 126408519 126408689 -17873800 - L1MB7 LINE L1 0 6184 6007 24 53 0 0 chr12 126410046 126410084 -17872405 + AT_rich Low_complexity Low_complexity 1 38 0 1134 239 49 0 chr12 126410256 126410541 -17871948 - L1MB7 LINE L1 -20 6164 5866 354 298 25 25 chr12 126410545 126410666 -17871823 - MIR SINE MIR -93 169 49 1719 165 85 20 chr12 126411481 126411833 -17870656 + THE1C LTR MaLR 1 375 0 675 255 67 5 chr12 126411834 126412042 -17870447 + MIR SINE MIR 2 222 -40 726 226 28 0 chr12 126412099 126412276 -17870213 + L1MD3 LINE L1 7814 7995 0 232 385 66 0 chr12 126413257 126413379 -17869110 - L2 LINE L2 -7 3265 3136 261 351 30 8 chr12 126413432 126413566 -17868923 + MIR SINE MIR 3 139 -123 6841 58 24 1 chr12 126413693 126415146 -17867343 - L1PA6 LINE L1 -3 6151 4685 38789 99 15 8 chr12 126415292 126421260 -17861229 - L1PA6 LINE L1 -141 6013 11 296 219 12 37 chr12 126422191 126422273 -17860216 - L2 LINE L2 -306 2966 2887 288 170 0 0 chr12 126422288 126422341 -17860148 + (TG)n Simple_repeat Simple_repeat 2 54 0 320 319 192 4 chr12 126422364 126422630 -17859859 - L2 LINE L2 -454 2860 2545 1522 188 70 11 chr12 126422964 126423251 -17859238 + AluJo SINE Alu 1 304 -8 2281 111 0 10 chr12 126424147 126424454 -17858035 - AluSg SINE Alu -6 304 1 3516 91 0 0 chr12 126424463 126424926 -17857563 - L1PA15 LINE L1 -6 6159 5697 368 370 0 11 chr12 126425111 126425290 -17857199 + L2 LINE L2 2862 3038 -275 207 237 0 0 chr12 126425290 126425349 -17857140 + MER91A DNA MER1_type 1 59 -137 1572 231 135 7 chr12 126425351 126425758 -17856731 - MLT1C LTR MaLR -2 465 7 251 349 135 0 chr12 126425762 126425888 -17856601 + MER91A DNA MER1_type 54 196 0 272 289 103 0 chr12 126425959 126426056 -17856433 + L2 LINE L2 3204 3310 -3 1136 167 19 44 chr12 126427558 126427723 -17854766 - L1MD3 LINE L1 0 7995 7838 2258 118 0 0 chr12 126427723 126428020 -17854469 - AluSx SINE Alu -15 297 1 1136 167 19 44 chr12 126428020 126428124 -17854365 - L1MD3 LINE L1 -157 7838 7733 434 106 0 106 chr12 126428136 126428221 -17854268 + L1M1 LINE L1 5629 5704 -600 28 29 0 0 chr12 126428222 126428257 -17854232 + AT_rich Low_complexity Low_complexity 1 35 0 297 159 0 0 chr12 126428271 126428334 -17854155 + (TA)n Simple_repeat Simple_repeat 1 63 0 823 279 64 34 chr12 126428404 126429172 -17853317 + L1ME3 LINE L1 4801 5586 -673 899 154 21 103 chr12 126429172 126429406 -17853083 + MER20 DNA MER1_type 1 215 -4 823 279 64 34 chr12 126429406 126429491 -17852998 + L1ME3 LINE L1 5586 5667 -592 1054 78 0 0 chr12 126429604 126429732 -17852757 - AluSg/x SINE Alu -6 306 179 319 260 0 0 chr12 126429853 126429946 -17852543 + L1ME3 LINE L1 5712 5804 -358 387 263 80 0 chr12 126429946 126430121 -17852368 - HsTC2 DNA Tc2 0 1898 1710 815 251 50 46 chr12 126430122 126430405 -17852084 - HsTC2 DNA Tc2 -1579 319 36 251 311 29 0 chr12 126430414 126430517 -17851972 + L1ME3 LINE L1 5846 5951 -211 1014 186 75 94 chr12 126430722 126431147 -17851342 + MER96B DNA MER1_type 1 417 0 211 290 0 14 chr12 126431163 126431232 -17851257 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 2129 125 0 0 chr12 126431237 126431557 -17850932 - AluSx SINE Alu 0 321 2 284 0 28 0 chr12 126431558 126431594 -17850895 + (TTA)n Simple_repeat Simple_repeat 2 38 0 334 241 11 0 chr12 126431922 126432009 -17850480 - MIR SINE MIR -115 147 60 2201 97 0 60 chr12 126432161 126432480 -17850009 - AluSx SINE Alu -12 300 1 2131 174 31 54 chr12 126432921 126433020 -17849469 - MLT1C LTR MaLR 0 467 367 1786 122 4 8 chr12 126433020 126433292 -17849197 - AluSx SINE Alu 0 306 36 2131 174 31 54 chr12 126433292 126433669 -17848820 - MLT1C LTR MaLR -100 367 1 344 278 117 36 chr12 126433804 126434052 -17848437 + L2 LINE L2 2810 3077 -195 222 333 10 20 chr12 126434459 126434558 -17847931 + MIR SINE MIR 86 183 -79 2048 135 0 20 chr12 126435087 126435390 -17847099 + AluSx SINE Alu 1 297 -15 195 304 38 25 chr12 126435788 126435867 -17846622 + L2 LINE L2 3193 3272 0 830 247 0 6 chr12 126436371 126436549 -17845940 - MER5B DNA MER1_type 0 178 2 759 322 153 40 chr12 126436798 126437326 -17845163 + MLT1K LTR MaLR 1 588 0 483 63 0 0 chr12 126437780 126437843 -17844646 + (TG)n Simple_repeat Simple_repeat 2 64 0 2000 165 12 12 chr12 126437844 126438184 -17844305 + MER2 DNA MER2_type 1 340 -5 247 245 0 0 chr12 126438188 126438237 -17844252 + MER58 DNA MER1_type 2354 2402 -18 220 325 16 16 chr12 126438878 126438906 -17843583 + GA-rich Low_complexity Low_complexity 1 28 -98 197 62 0 31 chr12 126438906 126438938 -17843551 + (CAGAGA)n Simple_repeat Simple_repeat 2 32 0 220 325 16 16 chr12 126438938 126439035 -17843454 + GA-rich Low_complexity Low_complexity 27 126 0 1556 154 70 28 chr12 126439651 126439937 -17842552 - AluJo SINE Alu -14 298 1 665 300 33 33 chr12 126440013 126440286 -17842203 + Charlie8 DNA MER1_type 5 277 -2140 329 288 72 0 chr12 126440388 126440513 -17841976 - L2 LINE L2 0 3313 3180 206 270 95 0 chr12 126440543 126440606 -17841883 - MIR SINE MIR -77 185 117 344 348 8 13 chr12 126440995 126441161 -17841328 - MIR SINE MIR -65 143 17 349 267 256 13 chr12 126441385 126441594 -17840895 - MIR SINE MIR 0 262 10 2862 73 73 26 chr12 126441951 126442375 -17840114 + MLT2A1 LTR ERVL 1 444 0 45735 56 5 12 chr12 126442375 126443964 -17838525 + HERVL-A1 LTR ERVL 1 1601 -4053 1911 106 3 3 chr12 126443964 126444247 -17838242 + L1PB1 LINE L1 5869 6151 0 45735 56 5 12 chr12 126444247 126448256 -17834233 + HERVL-A1 LTR ERVL 1601 5554 -100 2074 96 3 17 chr12 126448256 126448548 -17833941 + AluSp SINE Alu 1 288 -25 2333 102 38 17 chr12 126448548 126448851 -17833638 + MLT2A1 LTR ERVL 93 405 -39 450 43 32 32 chr12 126448851 126448944 -17833545 + (TA)n Simple_repeat Simple_repeat 1 93 0 2333 102 38 17 chr12 126448944 126448984 -17833505 + MLT2A1 LTR ERVL 405 443 -1 614 231 86 68 chr12 126449166 126449400 -17833089 + MLT1K LTR MaLR 332 569 -19 223 287 37 93 chr12 126449606 126449714 -17832775 + L2 LINE L2 3160 3261 -11 434 246 144 21 chr12 126449716 126449903 -17832586 - L2 LINE L2 -4 3309 3100 221 341 199 21 chr12 126450046 126450328 -17832161 - L2 LINE L2 -446 2868 2637 1231 203 9 0 chr12 126450328 126450550 -17831939 + MER58A DNA MER1_type 1 224 0 221 341 199 21 chr12 126450550 126450695 -17831794 - L2 LINE L2 -677 2637 2365 247 318 53 45 chr12 126450770 126450902 -17831587 + MIR3 SINE MIR 14 146 -62 180 152 0 0 chr12 126451331 126451364 -17831125 + (CA)n Simple_repeat Simple_repeat 2 34 0 680 198 127 6 chr12 126451520 126451677 -17830812 + MIR3 SINE MIR 20 195 -13 607 275 29 62 chr12 126451684 126451924 -17830565 + Charlie8 DNA MER1_type 1 232 -2185 2001 171 52 39 chr12 126452138 126452599 -17829890 - MLT1C LTR MaLR 0 467 1 1171 253 83 32 chr12 126452951 126453326 -17829163 + L1MC4 LINE L1 7420 7813 -229 487 276 21 30 chr12 126453322 126453517 -17828972 + L1MC4 LINE L1 6146 6242 0 * 474 229 31 0 chr12 126453535 126453631 -17828858 - MER5A DNA MER1_type -4 185 87 181 229 66 16 chr12 126455018 126455079 -17827410 - L2 LINE L2 -2837 477 414 769 269 16 0 chr12 126455196 126455382 -17827107 + MIR SINE MIR 74 262 0 199 253 24 60 chr12 126455447 126455530 -17826959 - MIR SINE MIR -6 256 177 199 262 12 71 chr12 126456604 126456688 -17825801 - MIR SINE MIR -76 132 54 377 269 37 0 chr12 126456694 126456802 -17825687 + MIR SINE MIR 89 200 -62 866 238 40 22 chr12 126457574 126457797 -17824692 - MIR SINE MIR -1 261 35 558 220 53 27 chr12 126458368 126458520 -17823969 + MIR SINE MIR 39 192 -63 217 320 165 21 chr12 126460483 126460580 -17821909 + MIR SINE MIR 30 140 -122 212 302 48 0 chr12 126460794 126460857 -17821632 + L2 LINE L2 3201 3266 -6 242 239 114 23 chr12 126461329 126461417 -17821072 + MER33 DNA MER1_type 1 96 -228 1620 184 0 0 chr12 126461506 126461788 -17820701 + AluJo SINE Alu 1 282 -30 186 43 0 0 chr12 126461791 126461814 -17820675 + (TAA)n Simple_repeat Simple_repeat 2 24 0 517 311 105 0 chr12 126462193 126462402 -17820087 - MIR SINE MIR -18 244 14 430 290 21 93 chr12 126462967 126463246 -17819243 + L2 LINE L2 2899 3157 -115 251 140 20 0 chr12 126463252 126463302 -17819187 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 479 280 56 0 chr12 126463336 126463461 -17819028 + L2 LINE L2 3138 3269 -3 215 264 81 46 chr12 126463505 126463592 -17818897 + L2 LINE L2 3137 3226 -46 521 309 191 5 chr12 126464219 126464439 -17818050 + MIR SINE MIR 2 262 0 2115 95 0 20 chr12 126464549 126464845 -17817644 - AluSg SINE Alu -18 292 3 422 301 21 3 chr12 126465120 126465459 -17817030 + GA-rich Low_complexity Low_complexity 1 345 0 614 261 108 88 chr12 126466135 126466266 -17816223 + L2 LINE L2 2542 2669 -603 1879 164 39 0 chr12 126466266 126466626 -17815863 - L1MB5 LINE L1 0 6174 5801 614 261 108 88 chr12 126466626 126467013 -17815476 + L2 LINE L2 2669 3078 -194 308 232 0 11 chr12 126468383 126468478 -17814011 + GA-rich Low_complexity Low_complexity 2 95 0 1194 236 32 48 chr12 126468535 126468908 -17813581 + L1ME LINE L1 5455 5821 -349 2256 150 31 21 chr12 126469122 126469508 -17812981 + MLT1B LTR MaLR 1 390 0 342 299 119 8 chr12 126469643 126469777 -17812712 + L2 LINE L2 3162 3310 -3 1714 136 3 52 chr12 126469859 126470168 -17812321 - AluSx SINE Alu -18 294 1 409 210 59 25 chr12 126470693 126470812 -17811677 + MIR SINE MIR 25 147 -61 634 254 27 12 chr12 126471157 126471321 -17811168 - MIR SINE MIR -4 258 92 894 224 31 48 chr12 126471720 126471948 -17810541 + MER58A DNA MER1_type 1 224 0 602 266 24 0 chr12 126472216 126472385 -17810104 - MER3 DNA MER1_type -83 126 1 412 253 124 11 chr12 126472535 126472721 -17809768 + L1MC4a LINE L1 5718 5924 -1884 319 287 135 50 chr12 126472794 126472908 -17809581 - L2 LINE L2 -70 3243 3140 1842 156 0 0 chr12 126472908 126473197 -17809292 + AluJb SINE Alu 3 291 -21 319 287 135 50 chr12 126473197 126473571 -17808918 - L2 LINE L2 -173 3140 2712 824 130 14 22 chr12 126473571 126473709 -17808780 - L1P LINE L1 -1114 5032 4896 4819 85 9 15 chr12 126473709 126474332 -17808157 + L1PA10 LINE L1 5512 6135 -33 2117 92 7 7 chr12 126474332 126474635 -17807854 - AluSp SINE Alu -10 303 1 4819 85 9 15 chr12 126474635 126474668 -17807821 + L1PA10 LINE L1 6135 6167 -1 280 309 132 20 chr12 126474702 126474906 -17807583 - L2 LINE L2 -640 2674 2448 799 305 10 0 chr12 126475710 126475913 -17806576 - MER58A DNA MER1_type 0 224 20 418 287 46 0 chr12 126476192 126476300 -17806189 + L2 LINE L2 3140 3252 -20 212 296 62 25 chr12 126477713 126477794 -17804695 + MIR3 SINE MIR 12 95 -113 684 266 124 21 chr12 126477885 126477958 -17804531 - MIR SINE MIR -1 261 197 1840 154 0 35 chr12 126477958 126478276 -17804213 - AluJo SINE Alu -5 307 1 684 266 124 21 chr12 126478276 126478435 -17804054 - MIR SINE MIR -65 197 5 360 313 23 8 chr12 126478885 126479016 -17803473 + MIR3 SINE MIR 74 206 -2 507 242 8 25 chr12 126479828 126479948 -17802541 + LTR67 LTR ERVL 428 545 -12 2087 103 10 0 chr12 126480009 126480299 -17802190 + AluSx SINE Alu 1 293 -19 222 217 72 14 chr12 126480338 126480407 -17802082 - MER5A DNA MER1_type -68 121 49 185 295 0 33 chr12 126480359 126480420 -17802069 + MER5B DNA MER1_type 94 152 -26 * 194 139 47 0 chr12 126480809 126480852 -17801637 + CT-rich Low_complexity Low_complexity 3 47 0 342 339 25 0 chr12 126481033 126481151 -17801338 - L1MC4a LINE L1 -1833 5975 5855 316 286 34 46 chr12 126481218 126481313 -17801176 + L1MC4a LINE L1 5741 5836 -1972 1182 188 32 5 chr12 126481313 126481531 -17800958 - MER58A DNA MER1_type 0 224 1 316 286 34 46 chr12 126481531 126481673 -17800816 + L1MC4a LINE L1 5836 5975 -1833 357 196 18 9 chr12 126481856 126481968 -17800521 + GA-rich Low_complexity Low_complexity 1 113 0 505 175 12 0 chr12 126481978 126482058 -17800431 - MER58A DNA MER1_type -26 81 1 433 274 9 0 chr12 126482073 126482179 -17800310 + L2 LINE L2 3163 3269 -3 2287 101 0 16 chr12 126482187 126482504 -17799985 + AluSx SINE Alu 1 312 0 447 264 143 6 chr12 126483739 126483921 -17798568 - MIR SINE MIR -36 226 20 1737 214 19 10 chr12 126484013 126484418 -17798071 + L1P4 LINE L1 5293 5698 -467 203 182 0 0 chr12 126484418 126484451 -17798038 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 2796 163 29 14 chr12 126484451 126484967 -17797522 + L1MB5 LINE L1 5643 6166 -8 350 355 53 22 chr12 126485585 126485813 -17796676 - MIR SINE MIR -20 242 8 3736 158 13 35 chr12 126485955 126486070 -17796419 + L1MB3 LINE L1 5504 5620 -563 2387 123 22 8 chr12 126486070 126486428 -17796061 + THE1B LTR MaLR 1 363 -1 3736 158 13 35 chr12 126486428 126486739 -17795750 + L1MB3 LINE L1 5620 5912 -271 2334 91 0 7 chr12 126486739 126487046 -17795443 - AluSc SINE Alu -4 305 1 3736 158 13 35 chr12 126487046 126487313 -17795176 + L1MB3 LINE L1 5912 6183 0 1982 146 0 13 chr12 126487321 126487637 -17794852 + AluJb SINE Alu 1 312 0 245 315 34 0 chr12 126488723 126488812 -17793677 + MIR SINE MIR 117 208 -54 532 246 28 0 chr12 126489212 126489354 -17793135 + L1ME3A LINE L1 6020 6165 -5 2153 104 3 0 chr12 126489358 126489656 -17792833 + AluSg SINE Alu 2 300 -10 2691 154 17 34 chr12 126489671 126490146 -17792343 + MLT1C LTR MaLR 1 467 0 1632 166 23 33 chr12 126490222 126490523 -17791966 - AluJb SINE Alu -14 298 1 1048 283 53 8 chr12 126490773 126491147 -17791342 + L2 LINE L2 2923 3313 0 593 294 80 5 chr12 126491196 126491252 -17791237 - MIR SINE MIR -48 214 164 3765 123 27 22 chr12 126491252 126491770 -17790719 - MER7C DNA MER2_type -2429 599 76 1714 140 4 40 chr12 126491770 126492048 -17790441 - AluSx SINE Alu -12 300 33 3765 123 27 22 chr12 126492048 126492125 -17790364 - MER7C DNA MER2_type -2952 76 1 593 294 80 5 chr12 126492125 126492255 -17790234 - MIR SINE MIR -98 164 14 373 323 46 53 chr12 126492792 126492975 -17789514 + L2 LINE L2 2505 2688 -626 1964 139 0 17 chr12 126492975 126493292 -17789197 - AluSx SINE Alu 0 312 1 373 323 46 53 chr12 126493292 126493392 -17789097 + L2 LINE L2 2688 2787 -527 1125 221 99 70 chr12 126493448 126493891 -17788598 + MLT1D LTR MaLR 49 504 -1 457 297 84 77 chr12 126493920 126494334 -17788155 + L2 LINE L2 2851 3267 -5 283 229 104 74 chr12 126495021 126495140 -17787349 + MIR SINE MIR 6 127 -81 363 303 172 0 chr12 126495207 126495352 -17787137 + MER96 DNA MER1_type? 1 170 -5 422 189 0 0 chr12 126496372 126496446 -17786043 + MER58 DNA MER1_type 2346 2419 -1 2224 122 3 3 chr12 126496476 126496772 -17785717 + AluSx SINE Alu 1 296 -16 335 300 9 18 chr12 126496896 126497006 -17785483 - L2 LINE L2 -13 3259 3151 247 250 59 0 chr12 126497780 126497848 -17784641 + MIR SINE MIR 99 170 -92 2234 94 0 0 chr12 126497939 126498214 -17784275 - AluSx SINE Alu -8 304 30 341 306 41 8 chr12 126498214 126498335 -17784154 - MIR SINE MIR -48 214 90 759 269 31 9 chr12 126498445 126498672 -17783817 + L1MB7 LINE L1 5944 6175 -9 2109 136 44 115 chr12 126498767 126499334 -17783155 + L1MB8 LINE L1 5651 6177 -1 477 286 10 69 chr12 126499370 126499573 -17782916 + MIR SINE MIR 42 232 -30 323 268 42 21 chr12 126499864 126500006 -17782483 + MER103 DNA DNA 5 149 -17 246 354 94 10 chr12 126500283 126500379 -17782110 - MIR SINE MIR -150 112 9 545 297 6 30 chr12 126500433 126500720 -17781769 + LTR16A LTR ERVL 18 335 -115 1050 186 114 26 chr12 126500720 126501097 -17781392 - MLT1D LTR MaLR -1 504 1 458 228 35 0 chr12 126501097 126501211 -17781278 + LTR16A LTR ERVL 330 447 -3 1555 181 60 3 chr12 126501234 126501516 -17780973 - AluJo SINE Alu -13 299 2 1269 138 23 14 chr12 126501603 126501820 -17780669 - MER20 DNA MER1_type 0 219 1 483 297 134 29 chr12 126502451 126502660 -17779829 + MIR SINE MIR 31 261 -1 682 317 70 32 chr12 126502682 126503083 -17779406 + L2 LINE L2 2805 3220 -93 428 243 127 6 chr12 126503157 126503330 -17779159 - L2 LINE L2 -249 3064 2871 252 324 27 61 chr12 126503391 126503539 -17778950 - L2 LINE L2 -713 2601 2459 496 264 8 23 chr12 126504417 126504546 -17777943 + MIR SINE MIR 108 234 -28 328 273 121 8 chr12 126504546 126504678 -17777811 + MLT2D LTR ERVL 219 365 -49 322 223 8 31 chr12 126504688 126504818 -17777671 + (TAGA)n Simple_repeat Simple_repeat 2 128 0 268 217 14 0 chr12 126504873 126505016 -17777473 + (TA)n Simple_repeat Simple_repeat 2 146 0 362 245 0 64 chr12 126505017 126505111 -17777378 + L1MC4 LINE L1 6616 6703 -1339 238 182 45 0 chr12 126505111 126505177 -17777312 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 245 90 60 30 chr12 126505207 126505274 -17777215 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 205 261 46 0 chr12 126505527 126505592 -17776897 + GA-rich Low_complexity Low_complexity 5 72 0 400 129 54 65 chr12 126506471 126506564 -17775925 - MIR SINE MIR -94 114 23 1065 195 14 0 chr12 126506596 126506806 -17775683 + MER20 DNA MER1_type 6 218 -1 252 328 41 8 chr12 126507375 126507497 -17774992 - MIR SINE MIR -6 256 131 647 227 8 0 chr12 126507501 126507633 -17774856 - MER58B DNA MER1_type -4 337 205 209 274 0 0 chr12 126507633 126507684 -17774805 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 809 291 128 35 chr12 126507771 126508176 -17774313 + L2 LINE L2 2871 3313 0 522 277 10 50 chr12 126508230 126508243 -17774246 + MIR SINE MIR 23 35 -227 1463 203 32 3 chr12 126508243 126508558 -17773931 + MER33 DNA MER1_type 1 324 0 522 277 10 50 chr12 126508558 126508746 -17773743 + MIR SINE MIR 35 216 -46 1898 186 7 0 chr12 126509138 126509445 -17773044 + AluJb SINE Alu 1 309 -3 279 0 0 0 chr12 126509566 126509597 -17772892 + (TG)n Simple_repeat Simple_repeat 1 31 0 633 308 94 24 chr12 126509626 126509999 -17772490 + MLT1K LTR MaLR 163 561 -27 474 280 26 112 chr12 126510960 126511121 -17771368 + Charlie8 DNA MER1_type 32 162 -179 1833 153 0 4 chr12 126511121 126511383 -17771106 - AluSx SINE Alu -51 261 1 474 280 26 112 chr12 126511383 126511489 -17771000 + Charlie8 DNA MER1_type 162 276 -65 259 284 0 0 chr12 126511543 126511617 -17770872 + Charlie8 DNA MER1_type 2344 2417 0 193 159 159 0 chr12 126512458 126512502 -17769987 - L2 LINE L2 -1 3271 3221 330 288 49 53 chr12 126512968 126513211 -17769278 + L1ME4a LINE L1 5630 5871 -250 817 206 0 0 chr12 126513781 126513927 -17768562 + MER3 DNA MER1_type 1 146 -63 684 156 62 31 chr12 126513927 126514055 -17768434 - FLAM_A SINE Alu -5 137 6 327 159 0 43 chr12 126514057 126514126 -17768363 + MER3 DNA MER1_type 144 209 0 260 200 20 0 chr12 126514089 126514139 -17768350 - MER3 DNA MER1_type -125 84 34 * 4413 81 2 0 chr12 126514186 126514739 -17767750 + MER41A LTR ERV1 1 554 0 545 246 47 47 chr12 126515248 126515439 -17767050 - MIR SINE MIR -42 220 30 562 222 167 6 chr12 126515524 126515704 -17766785 + L1MD3 LINE L1 7787 7995 0 2228 131 0 16 chr12 126515912 126516226 -17766263 + AluSq SINE Alu 1 309 -4 195 42 0 0 chr12 126516948 126516972 -17765517 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 243 0 0 0 chr12 126516971 126516998 -17765491 + (CA)n Simple_repeat Simple_repeat 1 27 0 1323 246 36 6 chr12 126517189 126517546 -17764943 + L1ME2 LINE L1 4760 5127 -1019 1437 142 18 5 chr12 126517552 126517770 -17764719 + AluSx SINE Alu 1 221 -91 2153 113 0 3 chr12 126517770 126518082 -17764407 + AluSx SINE Alu 2 312 0 1267 215 38 82 chr12 126518089 126518308 -17764181 + L1ME2 LINE L1 5295 5483 -681 891 204 0 106 chr12 126518308 126518553 -17763936 - MER20 DNA MER1_type 0 219 1 1267 215 38 82 chr12 126518553 126518808 -17763681 + L1ME2 LINE L1 5483 5748 -416 711 196 48 12 chr12 126518812 126518980 -17763509 + MLT1C LTR MaLR 6 179 -288 1718 182 10 0 chr12 126518990 126519287 -17763202 + AluJb SINE Alu 13 312 0 697 151 7 7 chr12 126519293 126519432 -17763057 + GA-rich Low_complexity Low_complexity 3 141 0 1072 189 49 26 chr12 126519432 126519696 -17762793 + MLT1C LTR MaLR 196 465 -2 1405 212 48 38 chr12 126519700 126520096 -17762393 + L1ME2 LINE L1 5759 6158 -6 330 115 0 0 chr12 126521549 126521601 -17760888 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 308 285 62 54 chr12 126521601 126521723 -17760766 - L2 LINE L2 -8 3264 3139 548 259 62 109 chr12 126521783 126521868 -17760621 + MIR SINE MIR 2 89 -173 1131 188 9 35 chr12 126521868 126522097 -17760392 - MER58A DNA MER1_type -1 223 1 548 259 62 109 chr12 126522097 126522285 -17760204 + MIR SINE MIR 89 262 0 189 0 0 0 chr12 126522300 126522321 -17760168 + (TCTCCC)n Simple_repeat Simple_repeat 2 22 0 6859 61 5 57 chr12 126522337 126523918 -17758571 + SVA Other Other 1 1382 -4 2258 112 0 3 chr12 126524153 126524456 -17758033 - AluSx SINE Alu -10 302 1 576 297 80 67 chr12 126525089 126525292 -17757197 + L2 LINE L2 2816 3015 -257 1208 219 5 5 chr12 126525292 126525516 -17756973 + MER58A DNA MER1_type 1 224 0 576 297 80 67 chr12 126525516 126525763 -17756726 + L2 LINE L2 3015 3272 0 2300 127 7 0 chr12 126525867 126526175 -17756314 + AluSx SINE Alu 1 310 -2 218 304 157 9 chr12 126526470 126526585 -17755904 + L2 LINE L2 3124 3255 -17 477 71 0 0 chr12 126526587 126526657 -17755832 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 231 214 71 0 chr12 126527840 126527896 -17754593 + MER117 DNA MER1_type 59 118 -79 232 227 0 0 chr12 126528285 126528329 -17754160 + L2 LINE L2 3262 3305 -8 2160 143 0 9 chr12 126528406 126528721 -17753768 + AluJb SINE Alu 1 312 0 1822 82 0 4 chr12 126529025 126529268 -17753221 + MER75B DNA T2_type 2 243 0 246 231 99 11 chr12 126529281 126529372 -17753117 + MER113 DNA MER1_type? 8 106 -415 2175 141 0 0 chr12 126529378 126529683 -17752806 + AluSx SINE Alu 1 305 -7 725 258 49 33 chr12 126529987 126530181 -17752308 + MIR SINE MIR 13 202 -60 3544 159 2 21 chr12 126530181 126530470 -17752019 - MER7C DNA MER2_type -2429 599 306 2284 110 13 0 chr12 126530470 126530769 -17751720 + AluSx SINE Alu 1 303 -9 3544 159 2 21 chr12 126530769 126530951 -17751538 - MER7C DNA MER2_type -2722 306 140 2468 70 0 10 chr12 126530951 126531264 -17751225 + AluY SINE Alu 1 310 -1 3544 159 2 21 chr12 126531264 126531399 -17751090 - MER7C DNA MER2_type -2888 140 4 725 258 49 33 chr12 126531399 126531448 -17751041 + MIR SINE MIR 202 260 -2 263 293 88 96 chr12 126531479 126531728 -17750761 - L2 LINE L2 0 3272 3026 2673 99 3 3 chr12 126531813 126532188 -17750301 - L1PB1 LINE L1 -1 6150 5776 278 67 33 33 chr12 126532188 126532248 -17750241 + (TA)n Simple_repeat Simple_repeat 2 61 0 2846 101 7 5 chr12 126532446 126532852 -17749637 + L1PB1 LINE L1 5742 6148 -3 23 0 0 0 chr12 126532853 126532876 -17749613 + AT_rich Low_complexity Low_complexity 1 23 0 540 70 0 0 chr12 126533246 126533317 -17749172 - L1PB1 LINE L1 -34 6117 6047 538 304 148 20 chr12 126533319 126533677 -17748812 + L2 LINE L2 2907 3310 -3 894 272 24 16 chr12 126534560 126534814 -17747675 + MIR SINE MIR 6 261 -1 359 250 243 0 chr12 126535928 126536064 -17746425 - L1M4 LINE L1 -1363 4783 4615 2251 97 0 32 chr12 126536069 126536380 -17746109 + AluSg SINE Alu 1 301 -9 248 171 0 0 chr12 126536380 126536421 -17746068 + MLT1D LTR MaLR 456 496 -9 227 340 60 0 chr12 126536532 126536632 -17745857 + MIR SINE MIR 36 141 -67 198 250 222 35 chr12 126537153 126537297 -17745192 + MER5A DNA MER1_type 17 187 -2 2240 108 6 13 chr12 126537380 126537694 -17744795 - AluSx SINE Alu 0 312 1 24 0 0 0 chr12 126537694 126537718 -17744771 + AT_rich Low_complexity Low_complexity 1 24 0 933 155 46 46 chr12 126538176 126538350 -17744139 + AluJb SINE Alu 118 291 -21 640 213 65 112 chr12 126538370 126538443 -17744046 + L1ME1 LINE L1 5901 5976 -188 2129 114 3 10 chr12 126538443 126538740 -17743749 + AluSx SINE Alu 5 299 -13 640 213 65 112 chr12 126538740 126538943 -17743546 + L1ME1 LINE L1 5976 6164 0 24 0 0 0 chr12 126538945 126538969 -17743520 + AT_rich Low_complexity Low_complexity 1 24 0 234 365 24 24 chr12 126540984 126541151 -17741338 + L2 LINE L2 733 899 -2415 345 321 124 18 chr12 126541203 126541421 -17741068 + L2 LINE L2 2479 2719 -595 1196 201 103 32 chr12 126541697 126542036 -17740453 + MER58D DNA MER1_type 20 382 -4 1123 262 117 7 chr12 126542051 126542494 -17739995 + LTR53 LTR ERVL 28 519 0 266 161 0 81 chr12 126544043 126544105 -17738384 + L1ME2 LINE L1 6107 6163 -1 435 264 92 6 chr12 126544605 126544779 -17737710 + L1MD3 LINE L1 7793 7981 -14 281 232 167 0 chr12 126545626 126545733 -17736756 + MIR SINE MIR 104 236 -26 525 234 27 0 chr12 126545788 126545899 -17736590 + MER81 DNA DNA 1 114 0 684 283 194 25 chr12 126545980 126546116 -17736373 - L2 LINE L2 0 3313 3201 189 107 0 0 chr12 126546116 126546144 -17736345 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 684 283 194 25 chr12 126546144 126546367 -17736122 - L2 LINE L2 -112 3201 2893 632 186 138 29 chr12 126546434 126546709 -17735780 - THE1C LTR MaLR 0 375 71 689 236 31 5 chr12 126546964 126547155 -17735334 + MER33 DNA MER1_type 15 210 -114 759 241 50 27 chr12 126547418 126547680 -17734809 - MLT1H LTR MaLR -229 320 53 276 81 0 0 chr12 126548241 126548278 -17734211 - Alu SINE Alu -263 37 1 451 181 0 0 chr12 126548282 126548365 -17734124 - L1MC/D LINE L1 -2096 5689 5607 211 299 16 38 chr12 126549024 126549208 -17733281 + (CGGGG)n Simple_repeat Simple_repeat 1 180 0 62 47 0 0 chr12 126549259 126549344 -17733145 + GC_rich Low_complexity Low_complexity 1 85 0 25 0 0 0 chr12 126549456 126549481 -17733008 + GC_rich Low_complexity Low_complexity 1 25 0 35 41 0 0 chr12 126549577 126549626 -17732863 + GC_rich Low_complexity Low_complexity 1 49 0 2357 116 0 0 chr12 126549949 126550259 -17732230 - AluSx SINE Alu -2 310 1 208 231 0 0 chr12 126550362 126550414 -17732075 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 231 170 0 0 chr12 126550794 126550841 -17731648 + Alu SINE Alu 1 47 -254 242 302 29 47 chr12 126551013 126551185 -17731304 + (CCCCG)n Simple_repeat Simple_repeat 2 170 0 204 235 23 47 chr12 126552145 126552241 -17730248 - MIR SINE MIR -63 145 79 1113 203 198 14 chr12 126552245 126552664 -17729825 - MLT1D LTR MaLR -6 499 4 508 187 8 41 chr12 126554323 126554446 -17728043 - MLT1G3 LTR MaLR -267 263 145 286 287 249 24 chr12 126554806 126555099 -17727390 - L2 LINE L2 -659 2655 2297 294 129 0 0 chr12 126555099 126555161 -17727328 + (TG)n Simple_repeat Simple_repeat 2 63 0 376 232 123 7 chr12 126555382 126555520 -17726969 + MLT1D LTR MaLR 1 154 -395 342 293 48 59 chr12 126556463 126556733 -17725756 + MLT1L LTR MaLR 11 277 -338 4020 140 61 11 chr12 126556967 126557243 -17725246 + THE1-int LTR MaLR 150 411 -1169 2194 113 0 20 chr12 126557243 126557545 -17724944 + AluSg SINE Alu 1 296 -14 4020 140 61 11 chr12 126557545 126558075 -17724414 + THE1-int LTR MaLR 411 996 -584 231 296 37 19 chr12 126558421 126558529 -17723960 - L2 LINE L2 -279 3034 2925 23 33 0 0 chr12 126558901 126558931 -17723558 + GC_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr12 126558957 126558984 -17723505 + GC_rich Low_complexity Low_complexity 1 27 0 189 0 0 0 chr12 126559080 126559101 -17723388 + (CCCCAG)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr12 126559134 126559159 -17723330 + GC_rich Low_complexity Low_complexity 1 25 0 360 197 42 0 chr12 126559885 126559956 -17722533 + AluJ/FRAM SINE Alu 229 302 0 * 516 278 114 9 chr12 126559953 126560222 -17722267 + MLT1D LTR MaLR 171 488 -8 601 248 91 25 chr12 126560369 126560567 -17721922 - MIR SINE MIR -11 251 41 331 206 16 0 chr12 126561569 126561632 -17720857 + FRAM SINE Alu 59 122 -44 687 135 35 7 chr12 126561714 126561855 -17720634 + L1MC4 LINE L1 7082 7226 -816 505 248 24 65 chr12 126562133 126562379 -17720110 - MER106A DNA MER1_type 0 236 1 1028 241 34 14 chr12 126562595 126562889 -17719600 - MER82 DNA MER2_type -346 307 8 2332 95 3 7 chr12 126563338 126563643 -17718846 + AluSp SINE Alu 1 304 -9 309 281 21 0 chr12 126564904 126565000 -17717489 - MER3 DNA MER1_type -8 201 104 1741 133 47 14 chr12 126566625 126566904 -17715585 - AluSx SINE Alu -24 288 1 289 397 15 23 chr12 126566986 126567117 -17715372 - L2 LINE L2 0 3272 3143 472 17 17 0 chr12 126567783 126567841 -17714648 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 1969 151 20 3 chr12 126567860 126568159 -17714330 + AluSx SINE Alu 1 304 -8 232 155 52 0 chr12 126568166 126568224 -17714265 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1822 169 0 7 chr12 126569010 126569306 -17713183 - AluSq SINE Alu -19 294 1 479 246 33 0 chr12 126569361 126569483 -17713006 - MIR SINE MIR -1 261 136 712 171 65 42 chr12 126569526 126569742 -17712747 - AluJo SINE Alu -90 222 2 280 303 67 25 chr12 126570136 126570255 -17712234 + MIR SINE MIR 17 140 -68 342 189 44 33 chr12 126570268 126570358 -17712131 - MLT1H1 LTR MaLR 0 555 465 1363 199 32 41 chr12 126570358 126570700 -17711789 - THE1B LTR MaLR 0 364 26 1153 132 21 5 chr12 126571188 126571377 -17711112 + L1PB1 LINE L1 5950 6141 -10 356 116 70 29 chr12 126572309 126572481 -17710008 + (TA)n Simple_repeat Simple_repeat 2 180 0 556 147 11 33 chr12 126572490 126572598 -17709891 - L1M4 LINE L1 -380 5771 5677 981 148 0 0 chr12 126572874 126573036 -17709453 + L1MC4 LINE L1 6915 7076 -966 1911 156 0 25 chr12 126573037 126573357 -17709132 + AluJo SINE Alu 1 312 0 331 206 16 0 chr12 126573382 126573445 -17709044 + FRAM SINE Alu 59 122 -44 3362 201 78 25 chr12 126573527 126574293 -17708196 + L1MC4 LINE L1 7082 7905 -137 524 55 0 14 chr12 126574293 126574366 -17708123 + (TGGA)n Simple_repeat Simple_repeat 4 75 0 3362 201 78 25 chr12 126574366 126574506 -17707983 + L1MC4 LINE L1 7905 8036 -6 457 308 6 52 chr12 126575333 126575505 -17706984 - MIR SINE MIR -44 218 55 536 243 130 17 chr12 126575918 126576095 -17706394 + MIR SINE MIR 6 202 -60 775 263 45 28 chr12 126576713 126576960 -17705529 - MIR SINE MIR 0 262 12 203 256 98 49 chr12 126576974 126577091 -17705398 + MIR SINE MIR 40 162 -46 5783 121 47 9 chr12 126577102 126577292 -17705197 + L1MA7 LINE L1 5096 5277 -1014 9184 101 7 7 chr12 126577292 126579438 -17703051 + L1PA8 LINE L1 4035 6172 0 5783 121 47 9 chr12 126579438 126580398 -17702091 + L1MA7 LINE L1 5277 6291 0 907 291 76 11 chr12 126580577 126580934 -17701555 - LTR16C LTR ERVL 0 491 112 233 318 32 0 chr12 126581125 126581188 -17701301 - MIR SINE MIR -102 106 42 2438 100 0 7 chr12 126581770 126582079 -17700410 + AluSx SINE Alu 1 307 -5 27 81 0 0 chr12 126582142 126582204 -17700285 + AT_rich Low_complexity Low_complexity 1 62 0 25 31 0 0 chr12 126582263 126582295 -17700194 + AT_rich Low_complexity Low_complexity 1 32 0 3096 134 4 6 chr12 126582298 126582783 -17699706 - L1PA16 LINE L1 -1 6165 5682 2789 86 8 5 chr12 126582791 126583165 -17699324 + THE1C LTR MaLR 1 375 0 341 269 46 101 chr12 126584258 126584477 -17698012 + L1ME4a LINE L1 5904 6110 -11 899 191 8 71 chr12 126584968 126585220 -17697269 - MER106A DNA MER1_type 0 236 1 2950 72 13 0 chr12 126585242 126585631 -17696858 + L1PA13 LINE L1 5770 6163 0 450 0 0 0 chr12 126585750 126585800 -17696689 + (TG)n Simple_repeat Simple_repeat 2 51 0 2303 115 0 0 chr12 126586154 126586450 -17696039 + AluSx SINE Alu 1 296 -16 1263 120 0 0 chr12 126586450 126586617 -17695872 + AluSg/x SINE Alu 134 300 -12 16067 119 18 10 chr12 126587030 126588571 -17693918 + Tigger1 DNA MER2_type 1 1572 -846 2353 116 0 0 chr12 126588571 126588872 -17693617 + AluSx SINE Alu 1 301 -11 16067 119 18 10 chr12 126588872 126589727 -17692762 + Tigger1 DNA MER2_type 1572 2418 0 425 243 46 40 chr12 126589732 126589905 -17692584 + MER112 DNA MER1_type 86 259 -1 341 286 67 38 chr12 126589906 126590011 -17692478 - MIR3 SINE MIR -54 154 47 1315 186 9 0 chr12 126591021 126591242 -17691247 + MER58A DNA MER1_type 1 223 -1 2654 148 10 27 chr12 126591260 126591625 -17690864 - L1MB3 LINE L1 0 6183 5826 2195 113 7 3 chr12 126591625 126591918 -17690571 + AluSx SINE Alu 1 294 -18 2654 148 10 27 chr12 126591918 126592033 -17690456 - L1MB3 LINE L1 -357 5826 5711 820 223 25 4 chr12 126592144 126592382 -17690107 + Charlie5 DNA MER1_type 2330 2572 -40 831 216 105 0 chr12 126592406 126592596 -17689893 - MER58A DNA MER1_type 0 224 15 330 298 0 58 chr12 126593410 126593601 -17688888 + (CACAT)n Simple_repeat Simple_repeat 1 180 0 * 475 223 0 72 chr12 126593496 126593689 -17688800 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 257 256 7 66 chr12 126593647 126593784 -17688705 + (CACAT)n Simple_repeat Simple_repeat 1 129 0 * 305 296 94 56 chr12 126594171 126594384 -17688105 - L2 LINE L2 0 3313 3093 2211 107 3 10 chr12 126594384 126594682 -17687807 + AluSq SINE Alu 1 296 -17 25 0 0 0 chr12 126594684 126594709 -17687780 + AT_rich Low_complexity Low_complexity 1 25 0 3787 30 0 0 chr12 126594693 126595128 -17687361 - L1PA3 LINE L1 -3 6152 5718 494 278 186 20 chr12 126595458 126595706 -17686783 - L2 LINE L2 -515 2799 2511 395 271 118 21 chr12 126596129 126596273 -17686216 - MIR SINE MIR -56 206 49 658 253 7 143 chr12 126596485 126596778 -17685711 + MIR SINE MIR 7 259 -3 567 254 58 29 chr12 126597153 126597326 -17685163 + MIR SINE MIR 20 197 -65 * 599 281 105 72 chr12 126597316 126597622 -17684867 - L2 LINE L2 0 3313 2998 2915 144 40 11 chr12 126597838 126598360 -17684129 + L1MB5 LINE L1 5626 6162 -12 248 270 40 93 chr12 126598391 126598669 -17683820 - L2 LINE L2 -140 3132 2870 960 87 0 8 chr12 126598700 126598827 -17683662 - AluSg SINE Alu -29 283 158 494 129 0 0 chr12 126598827 126598897 -17683592 - AluSg SINE Alu -239 71 2 2203 46 0 76 chr12 126598931 126599259 -17683230 + AluY SINE Alu 1 303 -8 1807 122 56 0 chr12 126599318 126599605 -17682884 + AluSx SINE Alu 1 303 -9 274 331 44 0 chr12 126600365 126600501 -17681988 - L2 LINE L2 -623 2691 2550 470 260 32 0 chr12 126600553 126600676 -17681813 - MIR SINE MIR -56 206 80 496 303 7 7 chr12 126601304 126601449 -17681040 + MIR SINE MIR 108 252 -10 2165 117 0 0 chr12 126601570 126601868 -17680621 + AluSq SINE Alu 2 299 -14 1550 206 97 48 chr12 126601951 126602356 -17680133 + MLT1C LTR MaLR 38 467 0 2375 48 3 32 chr12 126602484 126602794 -17679695 + AluY SINE Alu 1 301 -10 648 110 0 20 chr12 126602908 126603008 -17679481 + MER4A LTR ERV1 1 98 -566 * 1950 133 8 21 chr12 126603004 126603358 -17679131 + MER4A LTR ERV1 257 664 0 408 297 31 8 chr12 126603358 126603486 -17679003 - MIR SINE MIR -11 251 121 357 226 20 0 chr12 126603638 126603740 -17678749 + (CA)n Simple_repeat Simple_repeat 2 105 0 366 203 20 0 chr12 126603753 126603906 -17678583 + (CA)n Simple_repeat Simple_repeat 2 157 0 227 194 37 0 chr12 126603919 126604027 -17678462 + (CA)n Simple_repeat Simple_repeat 2 113 0 309 197 22 22 chr12 126604040 126604218 -17678271 + (CA)n Simple_repeat Simple_repeat 2 179 0 185 197 15 0 chr12 126604234 126604300 -17678189 + (CA)n Simple_repeat Simple_repeat 1 67 0 702 255 47 33 chr12 126605412 126605624 -17676865 - MIR SINE MIR 0 262 48 3904 156 33 17 chr12 126606231 126606935 -17675554 - L1MB5 LINE L1 -8 6166 5452 477 261 190 53 chr12 126606961 126607187 -17675302 - MIR SINE MIR -4 258 2 276 247 37 0 chr12 126607210 126607291 -17675198 - MIR SINE MIR -92 170 87 2346 110 14 14 chr12 126607299 126607654 -17674835 + L1PB1 LINE L1 5795 6149 -2 28 0 0 0 chr12 126607654 126607682 -17674807 + AT_rich Low_complexity Low_complexity 1 28 0 893 244 15 24 chr12 126608444 126608649 -17673840 + MER82 DNA MER2_type 1 203 -450 351 170 43 96 chr12 126608653 126608747 -17673742 - L1MC4 LINE L1 -1340 6702 6614 2170 172 66 27 chr12 126608749 126609190 -17673299 + MER82 DNA MER2_type 196 653 0 294 265 10 49 chr12 126609190 126609292 -17673197 + L2 LINE L2 3164 3261 -52 33 0 0 23 chr12 126609292 126609312 -17673177 + AT_rich Low_complexity Low_complexity 1 20 -23 1594 164 7 17 chr12 126609312 126609604 -17672885 + AluJb SINE Alu 1 289 -23 33 0 0 23 chr12 126609604 126609627 -17672862 + AT_rich Low_complexity Low_complexity 20 43 0 1661 135 95 0 chr12 126609681 126609955 -17672534 - AluSx SINE Alu -12 300 1 682 195 16 0 chr12 126610908 126611031 -17671458 + MIR SINE MIR 48 172 -90 1986 127 69 36 chr12 126611080 126611443 -17671046 + THE1C LTR MaLR 1 375 0 902 171 22 40 chr12 126611587 126611723 -17670766 + Charlie5 DNA MER1_type 2356 2488 -97 3123 153 59 2 chr12 126611723 126612285 -17670204 + L1MB4 LINE L1 5587 6180 0 902 171 22 40 chr12 126612285 126612376 -17670113 + Charlie5 DNA MER1_type 2488 2579 -6 2615 107 8 6 chr12 126612522 126612885 -17669604 + THE1B LTR MaLR 1 364 0 248 323 81 24 chr12 126613161 126613285 -17669204 + L2 LINE L2 3127 3257 -15 206 273 0 45 chr12 126613650 126613716 -17668773 - L2 LINE L2 -2 3311 3249 1903 152 0 3 chr12 126613839 126614129 -17668360 - AluJb SINE Alu -23 289 1 473 325 50 5 chr12 126614132 126614332 -17668157 - MIR SINE MIR -6 256 48 444 333 0 7 chr12 126614674 126614812 -17667677 - MIR SINE MIR -1 261 125 459 215 34 60 chr12 126614962 126615111 -17667378 + MIR SINE MIR 104 248 -14 305 312 42 68 chr12 126615126 126615363 -17667126 + L1ME LINE L1 70 300 -5770 23 0 0 0 chr12 126615590 126615613 -17666876 + AT_rich Low_complexity Low_complexity 1 23 0 1127 148 14 45 chr12 126615613 126615715 -17666774 - L1PA16 LINE L1 -9 6157 6053 2487 112 22 3 chr12 126615715 126616072 -17666417 + THE1B LTR MaLR 1 364 0 1127 148 14 45 chr12 126616072 126616192 -17666297 - L1PA16 LINE L1 -113 6053 5942 1540 230 66 94 chr12 126616275 126616697 -17665792 + L1ME LINE L1 242 674 -5406 2334 103 0 0 chr12 126616697 126617009 -17665480 + AluSx SINE Alu 1 312 0 1540 230 66 94 chr12 126617009 126617716 -17664773 + L1ME LINE L1 674 1365 -4715 1234 140 0 0 chr12 126617891 126618084 -17664405 - L1PA13 LINE L1 0 6163 5971 1992 112 0 0 chr12 126618100 126618377 -17664112 + AluSq SINE Alu 1 277 -36 1777 78 4 0 chr12 126618378 126618610 -17663879 + AluSp SINE Alu 65 297 -16 419 304 179 19 chr12 126618619 126618882 -17663607 + L2 LINE L2 3009 3313 0 1998 132 0 0 chr12 126618917 126619213 -17663276 + AluSx SINE Alu 1 296 -16 185 410 42 42 chr12 126619282 126619426 -17663063 + L3b LINE CR1 1360 1503 -80 633 274 75 72 chr12 126619593 126619914 -17662575 + L3 LINE CR1 1212 1533 -44 422 207 11 0 chr12 126619957 126620044 -17662445 - MER103 DNA DNA -16 150 63 1831 136 0 36 chr12 126620077 126620379 -17662110 - AluSx SINE Alu -21 291 1 838 225 29 0 chr12 126620480 126620653 -17661836 - MER5A DNA MER1_type -1 188 11 488 311 33 8 chr12 126620977 126621182 -17661307 - MIR SINE MIR -36 226 19 303 295 0 57 chr12 126621327 126621432 -17661057 - L2 LINE L2 -38 3234 3136 873 276 119 30 chr12 126621580 126621688 -17660801 + L2 LINE L2 2361 2458 -855 4250 107 59 5 chr12 126621688 126622317 -17660172 - MER4A LTR ERV1 0 664 2 873 276 119 30 chr12 126622317 126623090 -17659399 + L2 LINE L2 2458 3313 0 21 0 0 0 chr12 126623097 126623118 -17659371 + AT_rich Low_complexity Low_complexity 1 21 0 318 262 58 10 chr12 126623146 126623249 -17659240 - L2 LINE L2 -557 2757 2650 1786 137 3 43 chr12 126623621 126623943 -17658546 + AluJb SINE Alu 1 309 -3 517 294 65 16 chr12 126623967 126624151 -17658338 + MIR SINE MIR 70 262 0 274 241 14 0 chr12 126624428 126624573 -17657916 + (CA)n Simple_repeat Simple_repeat 1 147 0 198 264 0 0 chr12 126624596 126624702 -17657787 + (CA)n Simple_repeat Simple_repeat 2 107 0 243 256 17 0 chr12 126624755 126624931 -17657558 + (CA)n Simple_repeat Simple_repeat 1 179 0 518 307 0 0 chr12 126624965 126625141 -17657348 + (CA)n Simple_repeat Simple_repeat 2 177 0 216 260 35 0 chr12 126625225 126625398 -17657091 + (CA)n Simple_repeat Simple_repeat 1 179 0 347 256 9 0 chr12 126625440 126625879 -17656610 + (CA)n Simple_repeat Simple_repeat 1 443 0 368 220 11 22 chr12 126625920 126626102 -17656387 + (CA)n Simple_repeat Simple_repeat 1 180 0 289 259 13 0 chr12 126626119 126626345 -17656144 + (CA)n Simple_repeat Simple_repeat 1 229 0 1732 157 64 0 chr12 126627197 126627477 -17655012 - AluJo SINE Alu -14 298 1 1418 183 7 27 chr12 126627496 126627797 -17654692 - AluJo SINE Alu -17 295 1 441 301 63 0 chr12 126627798 126627941 -17654548 + MIR SINE MIR 46 197 -65 362 279 124 39 chr12 126628109 126628238 -17654251 + MIR SINE MIR 12 151 -57 419 331 8 8 chr12 126628490 126628620 -17653869 - L2 LINE L2 -2 3270 3141 3204 174 14 2 chr12 126628645 126629219 -17653270 + L1MB5 LINE L1 5585 6165 -9 1466 168 24 34 chr12 126629219 126629517 -17652972 - AluJo SINE Alu -17 295 1 2096 106 0 0 chr12 126629917 126630224 -17652265 + AluSx SINE Alu 1 307 0 22 0 0 0 chr12 126630276 126630298 -17652191 + AT_rich Low_complexity Low_complexity 1 22 0 2450 173 37 39 chr12 126630298 126630786 -17651703 + L1MB4 LINE L1 5643 6131 -49 2136 90 10 3 chr12 126630786 126631087 -17651402 + AluSx SINE Alu 1 303 -9 2450 173 37 39 chr12 126631087 126631137 -17651352 + L1MB4 LINE L1 6131 6180 0 509 255 183 5 chr12 126631191 126631399 -17651090 + MIR SINE MIR 18 262 0 2432 123 65 70 chr12 126632084 126632144 -17650345 - MSTA LTR MaLR 0 428 369 4235 47 8 13 chr12 126632144 126632678 -17649811 - L1PA8 LINE L1 0 6172 5642 1767 143 0 57 chr12 126632681 126632996 -17649493 - AluSx SINE Alu -15 297 1 2432 123 65 70 chr12 126632996 126633361 -17649128 - MSTA LTR MaLR -61 367 1 1957 178 40 101 chr12 126633579 126634085 -17648404 - MLT1D LTR MaLR -30 475 1 392 167 11 33 chr12 126634091 126634181 -17648308 + MIR SINE MIR 98 184 -62 2354 67 0 13 chr12 126634988 126635302 -17647187 + AluY SINE Alu 1 310 -1 591 244 17 23 chr12 126635351 126635523 -17646966 - MIR SINE MIR -72 190 20 849 193 53 12 chr12 126635561 126635604 -17646885 + MER58A DNA MER1_type 47 87 -2333 2169 92 3 16 chr12 126635604 126635910 -17646579 - AluSx SINE Alu -10 302 1 849 193 53 12 chr12 126635910 126636037 -17646452 + MER58A DNA MER1_type 87 224 0 612 179 57 0 chr12 126636577 126636683 -17645806 + MER81 DNA DNA 1 112 -2 660 276 16 11 chr12 126636941 126637126 -17645363 + MIR SINE MIR 56 241 -21 347 165 0 165 chr12 126637202 126637267 -17645222 + MER5A DNA MER1_type 13 57 -132 2107 138 0 0 chr12 126637267 126637579 -17644910 + AluSx SINE Alu 1 312 0 347 165 0 165 chr12 126637579 126637616 -17644873 + MER5A DNA MER1_type 57 98 -91 651 235 47 0 chr12 126637827 126637976 -17644513 + MER5B DNA MER1_type 20 175 -3 1658 180 24 9 chr12 126638080 126638419 -17644070 - L1MB5 LINE L1 -16 6158 5815 424 202 31 31 chr12 126639033 126639162 -17643327 - MER103 DNA DNA -6 160 32 559 281 6 38 chr12 126639239 126639399 -17643090 - L2 LINE L2 0 3313 3159 417 248 37 9 chr12 126639792 126639901 -17642588 + MER5A DNA MER1_type 77 188 -1 656 258 0 7 chr12 126639993 126640148 -17642341 + MIR SINE MIR 92 245 -17 1147 216 89 66 chr12 126640337 126640762 -17641727 + MLT1J1 LTR MaLR 12 446 0 745 296 69 53 chr12 126640769 126640830 -17641659 + L2 LINE L2 2930 2989 -324 930 143 4 115 chr12 126640830 126641074 -17641415 - MER20 DNA MER1_type 0 219 3 745 296 69 53 chr12 126641074 126641390 -17641099 + L2 LINE L2 2989 3313 0 215 0 85 43 chr12 126641707 126641754 -17640735 + T-rich Low_complexity Low_complexity 1 49 0 1710 179 0 7 chr12 126641873 126642180 -17640309 - AluJo SINE Alu -7 305 1 216 0 0 0 chr12 126642338 126642362 -17640127 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 313 289 71 38 chr12 126642682 126642893 -17639596 - L3 LINE CR1 -176 1401 1184 1113 175 0 0 chr12 126642934 126643123 -17639366 + MER5A DNA MER1_type 1 189 0 399 273 9 9 chr12 126643150 126643260 -17639229 + MIR SINE MIR 104 213 -49 1578 170 12 9 chr12 126643691 126644018 -17638471 + MER33 DNA MER1_type 1 319 -5 5910 132 52 21 chr12 126644175 126645966 -17636523 + L1MA5A LINE L1 4447 6296 -1 379 313 0 0 chr12 126646330 126646426 -17636063 + MER5A DNA MER1_type 9 104 -85 495 258 39 20 chr12 126646432 126646671 -17635818 + L1MC4a LINE L1 5215 5455 -711 873 262 79 29 chr12 126646683 126647023 -17635466 + L1MC4a LINE L1 5574 5930 -1878 459 314 21 84 chr12 126647035 126647265 -17635224 - L2 LINE L2 0 3313 3070 2129 109 0 0 chr12 126647265 126647558 -17634931 + AluSg SINE Alu 4 296 -14 450 0 0 0 chr12 126647558 126647608 -17634881 + (TG)n Simple_repeat Simple_repeat 2 51 0 459 314 21 84 chr12 126647608 126647663 -17634826 - L2 LINE L2 -241 3072 3045 1430 245 174 20 chr12 126647663 126648071 -17634418 + MLT1G1 LTR MaLR 112 582 -13 206 308 0 64 chr12 126648242 126648320 -17634169 + L2 LINE L2 3191 3263 -9 487 270 18 31 chr12 126648327 126648490 -17633999 - MIR SINE MIR -63 199 39 195 42 0 0 chr12 126648912 126648936 -17633553 + (TC)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chr12 126649170 126649203 -17633286 + AT_rich Low_complexity Low_complexity 1 33 0 2136 119 0 0 chr12 126649386 126649688 -17632801 + AluSx SINE Alu 1 302 -10 213 323 105 53 chr12 126649734 126649867 -17632622 + MIR SINE MIR 7 146 -116 423 296 74 0 chr12 126649937 126650072 -17632417 + MIR SINE MIR 80 224 -38 225 367 0 0 chr12 126650102 126650192 -17632297 + MIR SINE MIR 163 252 -10 268 346 8 16 chr12 126650369 126650496 -17631993 + L3 LINE CR1 1134 1259 -318 262 261 80 75 chr12 126650502 126650690 -17631799 + L2 LINE L2 3041 3229 -84 221 282 87 19 chr12 126650740 126650843 -17631646 + L3 LINE CR1 1349 1458 -119 570 260 0 7 chr12 126651037 126651183 -17631306 + L1MA10 LINE L1 6190 6334 0 317 187 99 22 chr12 126651606 126651697 -17630792 + L1ME4a LINE L1 6024 6121 0 987 255 42 8 chr12 126652529 126652768 -17629721 + MIR SINE MIR 16 262 0 2598 146 26 5 chr12 126652808 126653232 -17629257 + Tigger2a DNA MER2_type 2 434 0 285 280 80 47 chr12 126653287 126653400 -17629089 - L2 LINE L2 -1 3312 3191 4303 83 5 0 chr12 126653400 126653951 -17628538 + MER41A LTR ERV1 1 554 0 285 280 80 47 chr12 126653951 126653987 -17628502 - L2 LINE L2 -122 3191 3158 929 129 70 33 chr12 126653988 126654241 -17628248 - Tigger5 DNA MER2_type 0 2599 2103 381 152 0 0 chr12 126654233 126654299 -17628190 + Tigger5 DNA MER2_type 2096 2161 -162 * 770 200 52 19 chr12 126654294 126654449 -17628040 - Tigger5 DNA MER2_type -2163 160 1 1055 305 147 28 chr12 126654492 126655202 -17627287 - L2 LINE L2 -168 3104 2307 442 237 23 38 chr12 126655202 126655333 -17627156 - L2 LINE L2 -1253 2061 1933 4219 158 5 9 chr12 126655376 126656123 -17626366 + L1MA4 LINE L1 5552 6295 -5 2494 50 0 3 chr12 126656142 126656445 -17626044 + AluY SINE Alu 1 302 -9 1836 140 10 10 chr12 126656465 126656765 -17625724 + AluSx SINE Alu 1 300 -12 189 230 0 0 chr12 126656890 126656964 -17625525 + (TGGA)n Simple_repeat Simple_repeat 2 75 0 682 333 155 13 chr12 126656984 126657372 -17625117 + L2 LINE L2 2871 3313 0 816 209 0 0 chr12 126657372 126657651 -17624838 + (TGGA)n Simple_repeat Simple_repeat 1 279 0 217 50 25 25 chr12 126657696 126657736 -17624753 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 246 62 0 0 chr12 126658265 126658297 -17624192 + (CA)n Simple_repeat Simple_repeat 2 33 0 489 112 4 14 chr12 126658370 126658620 -17623869 + AluJb SINE Alu 1 300 -12 595 293 112 0 chr12 126658957 126659145 -17623344 + MIR SINE MIR 11 219 -43 722 232 96 18 chr12 126659270 126659490 -17622999 - MIR SINE MIR -16 246 10 318 280 43 11 chr12 126659694 126659787 -17622702 + L2 LINE L2 3160 3255 -17 403 233 139 16 chr12 126660011 126660140 -17622349 - MIR SINE MIR -6 256 112 250 366 0 0 chr12 126661040 126661122 -17621367 + L2 LINE L2 3232 3313 0 810 250 6 0 chr12 126661200 126661364 -17621125 - MER58B DNA MER1_type 0 341 177 1779 142 16 16 chr12 126661482 126661557 -17620932 + L1PA16 LINE L1 5855 5929 -237 2013 128 0 3 chr12 126661557 126661854 -17620635 + AluSx SINE Alu 5 300 -12 1779 142 16 16 chr12 126661854 126662081 -17620408 + L1PA16 LINE L1 5928 6157 -9 26 0 0 0 chr12 126662081 126662107 -17620382 + AT_rich Low_complexity Low_complexity 1 26 0 425 211 62 23 chr12 126663243 126663371 -17619118 - MIR SINE MIR -55 207 75 194 299 15 30 chr12 126663364 126663431 -17619058 + L2 LINE L2 3207 3272 0 * 2083 102 3 0 chr12 126663570 126663876 -17618613 + AluSq SINE Alu 1 307 0 293 303 78 61 chr12 126664013 126664244 -17618245 - MIR SINE MIR 0 262 28 313 286 65 76 chr12 126664665 126664850 -17617639 + MIR SINE MIR 57 239 -23 1575 176 3 24 chr12 126664940 126665236 -17617253 - AluJo SINE Alu -22 290 1 1583 138 0 43 chr12 126665447 126665729 -17616760 + AluJb SINE Alu 34 303 -9 234 238 188 12 chr12 126666338 126666418 -17616071 - L2 LINE L2 -286 3027 2934 211 324 65 22 chr12 126666592 126666777 -17615712 - MIR3 SINE MIR 0 208 16 1534 111 0 0 chr12 126666926 126667134 -17615355 - AluY SINE Alu -103 208 1 277 266 53 11 chr12 126667155 126667249 -17615240 + MIR SINE MIR 32 129 -133 182 286 11 33 chr12 126667357 126667448 -17615041 - L3b LINE CR1 -148 1435 1347 1160 216 5 0 chr12 126667511 126667733 -17614756 - MER58A DNA MER1_type -1 223 1 578 276 47 55 chr12 126667966 126668223 -17614266 + MIR SINE MIR 8 262 0 1223 138 32 28 chr12 126669014 126669231 -17613258 + MER20 DNA MER1_type 1 218 -1 255 228 204 43 chr12 126670609 126670771 -17611718 + MIR3 SINE MIR 17 204 -4 2037 100 7 4 chr12 126671652 126671933 -17610556 + AluSg SINE Alu 14 295 -15 650 215 93 61 chr12 126672636 126672850 -17609639 + MIR SINE MIR 35 255 -7 748 190 166 6 chr12 126672946 126673109 -17609380 + MER5A DNA MER1_type 1 189 0 364 254 55 0 chr12 126673205 126673315 -17609174 - L2 LINE L2 -236 3036 2921 401 226 30 107 chr12 126673954 126674122 -17608367 - MIR SINE MIR 0 262 108 371 263 74 40 chr12 126674194 126674369 -17608120 + L2 LINE L2 2708 2888 -426 1640 296 48 34 chr12 126674399 126674980 -17607509 + MLT2E LTR ERVL 36 624 -4 410 227 158 9 chr12 126675048 126675279 -17607210 + MLT1F LTR MaLR 190 468 -74 641 142 60 98 chr12 126675656 126675778 -17606711 + LTR45B LTR ERV1 314 428 -61 2297 68 0 0 chr12 126675778 126676071 -17606418 + AluY SINE Alu 1 293 -18 641 142 60 98 chr12 126676071 126676131 -17606358 + LTR45B LTR ERV1 428 489 0 439 229 28 37 chr12 126676271 126676380 -17606109 + L2 LINE L2 2938 3045 -268 1230 184 43 122 chr12 126676385 126676586 -17605903 + MLT2C1 LTR ERVL 8 161 -236 1650 166 10 38 chr12 126676586 126676899 -17605590 - AluJb SINE Alu -4 308 5 1230 184 43 122 chr12 126676899 126677116 -17605373 + MLT2C1 LTR ERVL 161 393 -4 1824 141 0 33 chr12 126677206 126677512 -17604977 - AluJo SINE Alu -12 300 5 825 240 34 10 chr12 126677559 126677763 -17604726 + MER3 DNA MER1_type 1 209 0 190 265 72 36 chr12 126677801 126677884 -17604605 + L2 LINE L2 3187 3272 0 241 259 0 17 chr12 126678871 126678929 -17603560 + GA-rich Low_complexity Low_complexity 1 57 0 218 213 21 0 chr12 126679085 126679132 -17603357 + GA-rich Low_complexity Low_complexity 4 51 0 660 186 25 6 chr12 126679656 126679817 -17602672 + (ATGGTG)n Simple_repeat Simple_repeat 4 167 0 594 314 16 11 chr12 126679847 126680038 -17602451 - MIR SINE MIR -52 210 19 348 272 73 122 chr12 126680081 126680368 -17602121 + L2 LINE L2 3041 3313 0 307 87 29 29 chr12 126680645 126680714 -17601775 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 216 316 60 26 chr12 126681227 126681344 -17601145 - L2 LINE L2 -203 3069 2949 1430 161 4 8 chr12 126681528 126681771 -17600718 + AluJb SINE Alu 57 298 -14 411 301 26 9 chr12 126681774 126681887 -17600602 - L2 LINE L2 -17 3296 3182 338 207 0 0 chr12 126682256 126682314 -17600175 + AluJ/FLAM SINE Alu 1 58 -244 1767 135 7 24 chr12 126682438 126682749 -17599740 + AluSx SINE Alu 1 306 0 518 258 141 55 chr12 126682999 126683093 -17599396 + L1ME4a LINE L1 5513 5598 -523 2198 101 7 3 chr12 126683093 126683399 -17599090 - AluSx SINE Alu -5 307 1 518 258 141 55 chr12 126683399 126683630 -17598859 + L1ME4a LINE L1 5598 5866 -255 1767 166 3 0 chr12 126683649 126683938 -17598551 - AluJo SINE Alu -22 290 1 739 228 0 32 chr12 126684127 126684285 -17598204 + MER20 DNA MER1_type 10 162 -57 1985 107 0 20 chr12 126684305 126684603 -17597886 - AluJo SINE Alu -20 292 1 313 251 261 20 chr12 126685162 126685365 -17597124 + L1ME4a LINE L1 5870 6121 0 469 292 0 0 chr12 126686000 126686120 -17596369 + MIR SINE MIR 53 172 -90 1915 74 8 16 chr12 126686748 126687038 -17595451 - AluSq SINE Alu 0 313 36 1765 149 3 3 chr12 126687374 126687656 -17594833 - AluJo SINE Alu -30 282 1 668 263 38 29 chr12 126687933 126688142 -17594347 - MIR SINE MIR -39 223 13 457 333 38 38 chr12 126688305 126688515 -17593974 - Charlie8 DNA MER1_type -2207 210 1 385 230 75 107 chr12 126689024 126689211 -17593278 + MIR SINE MIR 48 228 -34 2005 109 48 0 chr12 126689434 126689727 -17592762 - AluSx SINE Alu -5 307 1 2183 122 0 0 chr12 126689740 126690052 -17592437 - AluJo SINE Alu 0 312 1 428 202 28 55 chr12 126690207 126690316 -17592173 - MER3 DNA MER1_type -103 106 1 244 221 0 7 chr12 126690317 126690384 -17592105 - MIR SINE MIR -95 113 52 345 175 0 0 chr12 126690444 126690501 -17591988 - L2 LINE L2 -5 3267 3211 909 285 41 43 chr12 126690884 126691004 -17591485 + L1MC4 LINE L1 5489 5608 -2200 2155 116 0 0 chr12 126691004 126691314 -17591175 - AluSx SINE Alu -2 310 1 909 285 41 43 chr12 126691314 126691586 -17590903 + L1MC4 LINE L1 5608 5880 -1928 2478 52 0 3 chr12 126691674 126691982 -17590507 - AluY SINE Alu -4 307 1 1044 146 0 0 chr12 126692357 126692521 -17589968 - FRAM SINE Alu -12 164 1 29 60 0 0 chr12 126692534 126692584 -17589905 + AT_rich Low_complexity Low_complexity 1 50 0 813 125 0 0 chr12 126692679 126692799 -17589690 + AluJb SINE Alu 1 120 -192 216 0 0 0 chr12 126692799 126692823 -17589666 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 627 173 0 0 chr12 126692829 126692933 -17589556 + FRAM SINE Alu 36 139 -37 189 0 0 0 chr12 126692939 126692960 -17589529 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 2411 60 0 0 chr12 126693024 126693324 -17589165 - AluY SINE Alu -11 300 1 927 271 102 51 chr12 126693325 126693852 -17588637 + MLT1K LTR MaLR 33 586 -2 2276 193 63 4 chr12 126693906 126694383 -17588106 - MLT1D LTR MaLR 0 505 1 379 275 200 46 chr12 126694548 126694788 -17587701 + L1MC4 LINE L1 6458 6734 -1308 1880 197 123 7 chr12 126694817 126695233 -17587256 - MLT1C LTR MaLR -3 464 1 263 167 0 0 chr12 126695329 126695377 -17587112 + Alu SINE Alu 259 306 -2 29 0 0 0 chr12 126695377 126695406 -17587083 + AT_rich Low_complexity Low_complexity 1 29 0 815 189 0 0 chr12 126695822 126695954 -17586535 - FLAM_C SINE Alu -1 132 1 1390 195 113 66 chr12 126696124 126696336 -17586153 - MER113 DNA MER1_type? -1 520 319 1727 147 3 55 chr12 126696336 126696648 -17585841 - AluJb SINE Alu -8 304 9 1390 195 113 66 chr12 126696648 126696851 -17585638 - MER113 DNA MER1_type? -202 319 76 2289 90 3 7 chr12 126696851 126697152 -17585337 + AluSp SINE Alu 1 300 -13 1390 195 113 66 chr12 126697152 126697232 -17585257 - MER113 DNA MER1_type? -445 76 1 1975 159 0 0 chr12 126697336 126697637 -17584852 + AluJb SINE Alu 1 301 -11 985 235 217 54 chr12 126697722 126698182 -17584307 + MLT1H LTR MaLR 15 549 0 218 119 0 24 chr12 126698424 126698448 -17584041 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 -16 2226 108 16 7 chr12 126698448 126698753 -17583736 + AluSx SINE Alu 1 308 -4 218 119 0 24 chr12 126698753 126698770 -17583719 + (TAAAAA)n Simple_repeat Simple_repeat 28 44 0 724 235 31 10 chr12 126698773 126698969 -17583520 - MIR SINE MIR -15 247 48 30 0 0 0 chr12 126699009 126699039 -17583450 + AT_rich Low_complexity Low_complexity 1 30 0 590 131 0 0 chr12 126699049 126699133 -17583356 - AluS SINE Alu -9 303 220 608 200 186 0 chr12 126699248 126699393 -17583096 + MER5A DNA MER1_type 5 176 -13 24 32 0 0 chr12 126699493 126699524 -17582965 + AT_rich Low_complexity Low_complexity 1 31 0 2148 115 11 0 chr12 126699653 126699939 -17582550 - AluSx SINE Alu -23 289 1 387 280 0 0 chr12 126700295 126700388 -17582101 + L1MEd LINE L1 2 94 -6025 1230 142 5 5 chr12 126700390 126700580 -17581909 - AluSg/x SINE Alu -15 297 108 468 169 0 0 chr12 126700683 126700760 -17581729 - AluS SINE Alu -235 78 2 273 104 0 0 chr12 126700761 126700809 -17581680 + L1MB3 LINE L1 6136 6183 0 982 142 14 0 chr12 126701131 126701272 -17581217 + AluSq/x SINE Alu 1 143 -170 1964 114 37 0 chr12 126701274 126701581 -17580908 + AluSx SINE Alu 1 317 0 202 231 20 116 chr12 126701635 126701782 -17580707 - MIR SINE MIR -66 196 64 668 150 0 0 chr12 126701898 126701998 -17580491 + AluSg/x SINE Alu 202 301 -9 21 0 0 0 chr12 126702016 126702037 -17580452 + AT_rich Low_complexity Low_complexity 1 21 0 3091 134 11 0 chr12 126702037 126702513 -17579976 - L1PA16 LINE L1 -9 6157 5677 808 96 0 0 chr12 126702513 126702617 -17579872 - AluSq/x SINE Alu -204 108 5 1499 105 19 0 chr12 126702625 126702864 -17579625 - L1PA16 LINE L1 -684 5482 5240 2294 104 10 0 chr12 126702892 126703199 -17579290 + AluSq SINE Alu 1 310 -3 1869 147 3 14 chr12 126703200 126703493 -17578996 + AluSg SINE Alu 1 290 -20 249 33 0 0 chr12 126703954 126703984 -17578505 + (CA)n Simple_repeat Simple_repeat 2 31 0 2228 110 3 7 chr12 126704037 126704338 -17578151 - AluSx SINE Alu -12 300 1 454 234 216 28 chr12 126704488 126704742 -17577747 + L1ME LINE L1 5477 5780 -341 1859 114 4 0 chr12 126704842 126705087 -17577402 - AluSx SINE Alu -64 248 3 1013 179 21 11 chr12 126705099 126705289 -17577200 + AluSg/x SINE Alu 121 312 0 576 186 0 34 chr12 126705291 126705409 -17577080 - L1MA9 LINE L1 -28 6284 6171 398 286 146 35 chr12 126705473 126705672 -17576817 - L1MEd LINE L1 -5656 463 243 2448 81 0 7 chr12 126705672 126705981 -17576508 + AluY SINE Alu 1 307 -4 1378 160 110 21 chr12 126706034 126706315 -17576174 - AluJo SINE Alu -6 306 1 1873 146 3 17 chr12 126706440 126706734 -17575755 - AluJo SINE Alu -11 301 12 400 297 14 27 chr12 126706735 126706883 -17575606 - MIR SINE MIR -115 147 2 1348 125 20 156 chr12 126707104 126707288 -17575201 - MER33 DNA MER1_type -2261 324 117 2722 48 0 0 chr12 126707288 126707597 -17574892 + AluY SINE Alu 1 309 -2 1951 154 3 13 chr12 126707605 126707916 -17574573 + AluJo SINE Alu 1 308 -4 1348 125 20 156 chr12 126707916 126707964 -17574525 - MER33 DNA MER1_type -2475 110 57 789 133 0 31 chr12 126707964 126708092 -17574397 + FLAM_C SINE Alu 1 124 -9 1348 125 20 156 chr12 126708092 126708245 -17574244 - MER33 DNA MER1_type -2528 57 1 2052 124 0 0 chr12 126709366 126709648 -17572841 - AluSx SINE Alu -30 282 1 239 217 29 14 chr12 126709737 126709806 -17572683 - MLT1H LTR MaLR -6 589 520 1152 176 10 5 chr12 126709807 126710011 -17572478 - AluJo SINE Alu -23 289 85 702 213 81 182 chr12 126710011 126710083 -17572406 - MLT1H LTR MaLR -57 498 420 2391 110 30 28 chr12 126710083 126710446 -17572043 + THE1B LTR MaLR 1 364 0 702 213 81 182 chr12 126710446 126710927 -17571562 - MLT1H LTR MaLR -135 420 1 2095 112 3 42 chr12 126711037 126711349 -17571140 - AluSq SINE Alu -13 300 1 913 210 66 29 chr12 126711611 126711905 -17570584 - AluJb SINE Alu 0 304 1 249 33 0 0 chr12 126712095 126712125 -17570364 + (CA)n Simple_repeat Simple_repeat 2 31 0 412 282 0 16 chr12 126712178 126712302 -17570187 - Alu SINE Alu -2 298 177 376 254 9 26 chr12 126712221 126712335 -17570154 + AluSg/x SINE Alu 177 288 -12 * 252 223 78 29 chr12 126712340 126712392 -17570097 + L1ME LINE L1 5773 5821 -300 1249 193 0 0 chr12 126712392 126712646 -17569843 + L1MA4 LINE L1 6043 6296 -4 252 223 78 29 chr12 126712646 126712696 -17569793 + L1ME LINE L1 5821 5880 -241 1093 269 130 23 chr12 126712697 126713155 -17569334 + L2 LINE L2 2239 2803 -510 1827 178 0 0 chr12 126713155 126713458 -17569031 + AluJb SINE Alu 1 303 -9 1093 269 130 23 chr12 126713458 126713682 -17568807 + L2 LINE L2 2803 3002 -311 795 231 151 56 chr12 126713832 126714244 -17568245 + MLT1H LTR MaLR 97 547 -2 463 217 126 20 chr12 126714262 126714294 -17568195 + MLT1J1 LTR MaLR 1 28 -471 1939 170 3 0 chr12 126714294 126714605 -17567884 - AluJb SINE Alu 0 312 1 463 217 126 20 chr12 126714605 126714729 -17567760 + MLT1J1 LTR MaLR 28 203 -296 489 255 212 63 chr12 126714921 126715336 -17567153 + MLT1H LTR MaLR 69 545 -4 911 250 5 5 chr12 126715370 126715578 -17566911 + AluJo SINE Alu 1 208 -104 2314 97 3 3 chr12 126716027 126716326 -17566163 - AluSx SINE Alu -13 299 1 308 65 196 0 chr12 126716892 126716938 -17565551 - MADE1 DNA Mariner 0 80 26 405 243 174 0 chr12 126716970 126717114 -17565375 - MER5A DNA MER1_type -12 177 9 1992 128 0 7 chr12 126717391 126717672 -17564817 + AluSq SINE Alu 22 300 -13 1881 130 3 39 chr12 126717683 126717812 -17564677 + AluJb SINE Alu 3 135 -177 2532 69 0 7 chr12 126717812 126718118 -17564371 + AluY SINE Alu 1 304 -7 1881 130 3 39 chr12 126718118 126718295 -17564194 + AluJb SINE Alu 135 298 -14 1942 157 0 0 chr12 126718303 126718583 -17563906 + AluJb SINE Alu 1 280 -32 183 42 0 0 chr12 126718592 126718616 -17563873 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2223 112 23 0 chr12 126719264 126719569 -17562920 + AluSx SINE Alu 1 312 0 189 74 0 0 chr12 126719814 126719841 -17562648 + (A)n Simple_repeat Simple_repeat 1 27 0 244 287 190 29 chr12 126719972 126720146 -17562343 + MIR SINE MIR 49 250 -12 2845 197 72 35 chr12 126720430 126720997 -17561492 + L1MB3 LINE L1 5369 5913 -270 2031 99 81 7 chr12 126720997 126721281 -17561208 + AluSx SINE Alu 1 305 -7 2845 197 72 35 chr12 126721281 126721402 -17561087 + L1MB3 LINE L1 5913 6028 -155 2310 124 31 80 chr12 126721402 126721852 -17560637 + MSTA LTR MaLR 1 428 0 2845 197 72 35 chr12 126721852 126721882 -17560607 + L1MB3 LINE L1 6028 6055 -128 198 0 0 0 chr12 126721882 126721904 -17560585 + (CA)n Simple_repeat Simple_repeat 1 22 0 2845 197 72 35 chr12 126721904 126722098 -17560391 + L1MB3 LINE L1 6055 6102 -81 1634 160 9 72 chr12 126722098 126722429 -17560060 - AluSx SINE Alu 0 312 3 298 158 0 66 chr12 126722463 126722539 -17559950 - AluSg/x SINE Alu -20 282 212 383 202 11 21 chr12 126722641 126722735 -17559754 + AluSg/x SINE Alu 206 298 -2 782 277 72 48 chr12 126722756 126723001 -17559488 + L2 LINE L2 2863 3101 -212 1777 173 32 0 chr12 126723001 126723285 -17559204 - AluJb SINE Alu -19 293 1 1462 165 19 74 chr12 126723292 126723491 -17558998 - AluJo SINE Alu -20 292 114 378 0 0 0 chr12 126723491 126723533 -17558956 + (TAG)n Simple_repeat Simple_repeat 1 42 0 1462 165 19 74 chr12 126723533 126723642 -17558847 - AluJo SINE Alu -198 114 1 782 277 72 48 chr12 126723642 126723807 -17558682 + L2 LINE L2 3106 3291 -22 255 61 0 0 chr12 126724352 126724385 -17558104 + (TTA)n Simple_repeat Simple_repeat 3 35 0 2201 95 3 35 chr12 126724634 126724950 -17557539 + AluSx SINE Alu 1 306 -6 371 310 52 0 chr12 126724967 126725122 -17557367 + L2 LINE L2 2871 3033 -239 1891 160 7 7 chr12 126725329 126725461 -17557028 + AluJo SINE Alu 1 132 -180 484 14 0 56 chr12 126725461 126725557 -17556932 + L1PA3 LINE L1 6089 6155 0 1891 160 7 7 chr12 126725557 126725724 -17556765 + AluJo SINE Alu 131 300 -12 560 202 144 49 chr12 126726137 126726380 -17556109 + L1MC5 LINE L1 7642 7907 -54 2361 85 0 10 chr12 126726388 126726695 -17555794 + AluSg SINE Alu 1 304 -6 873 122 0 8 chr12 126726707 126726830 -17555659 + AluSq SINE Alu 91 212 -101 559 206 10 0 chr12 126726931 126727033 -17555456 + MER58B DNA MER1_type 239 341 0 1719 143 0 12 chr12 126727047 126727306 -17555183 + AluJb SINE Alu 47 302 -10 1869 110 61 0 chr12 126727688 126727952 -17554537 + AluSq SINE Alu 1 280 -33 638 145 24 40 chr12 126727956 126728080 -17554409 - MER103 DNA DNA -44 122 1 286 319 48 61 chr12 126728311 126728540 -17553949 - MIR SINE MIR -12 250 25 397 228 197 85 chr12 126728686 126729104 -17553385 + MLT1J LTR MaLR 108 615 0 365 283 58 40 chr12 126729370 126729543 -17552946 + MER5A DNA MER1_type 8 183 -6 473 100 0 12 chr12 126730278 126730295 -17552194 + (TC)n Simple_repeat Simple_repeat 2 18 -62 261 83 0 0 chr12 126730295 126730331 -17552158 + (CA)n Simple_repeat Simple_repeat 1 36 0 473 100 0 12 chr12 126730331 126730393 -17552096 + (TC)n Simple_repeat Simple_repeat 18 80 0 252 0 0 0 chr12 126731713 126731741 -17550748 + (T)n Simple_repeat Simple_repeat 1 28 0 2070 132 3 0 chr12 126732464 126732752 -17549737 + AluSx SINE Alu 1 289 -23 2086 125 3 52 chr12 126733275 126733603 -17548886 - AluSx SINE Alu 0 312 1 2055 120 24 37 chr12 126733743 126734118 -17548371 - L1MA4 LINE L1 -2 6298 5929 1983 152 0 34 chr12 126734138 126734460 -17548029 - AluJb SINE Alu -1 311 1 395 331 80 28 chr12 126734466 126734828 -17547661 + L1ME4a LINE L1 5649 6029 -92 1215 1112 717 73 chr12 126735153 126735382 -17547107 + L1MB5 LINE L1 5644 5725 -441 2044 92 9 155 chr12 126735382 126735755 -17546734 + THE1B LTR MaLR 1 306 -58 2433 74 3 0 chr12 126735755 126736053 -17546436 + AluSp SINE Alu 1 299 -14 2044 92 9 155 chr12 126736053 126736105 -17546384 + THE1B LTR MaLR 306 364 0 1215 1112 717 73 chr12 126736105 126736146 -17546343 + L1MB5 LINE L1 5725 5939 -227 1866 158 0 7 chr12 126736234 126736532 -17545957 + AluJo SINE Alu 1 296 -16 5202 197 78 124 chr12 126736561 126737053 -17545436 + L1M4 LINE L1 2315 2828 -3318 1982 129 17 14 chr12 126737053 126737364 -17545125 + AluSx SINE Alu 1 312 0 5202 197 78 124 chr12 126737364 126738543 -17543946 + L1M4 LINE L1 2828 4059 -2087 2042 124 3 14 chr12 126738543 126738826 -17543663 + AluSx SINE Alu 1 280 -32 690 0 0 32 chr12 126738827 126738920 -17543569 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 5202 197 78 124 chr12 126738920 126739770 -17542719 + L1M4 LINE L1 4058 4725 -1421 659 114 0 0 chr12 126739828 126739916 -17542573 + AluS SINE Alu 2 89 -223 1968 80 0 8 chr12 126739917 126740166 -17542323 + AluSx SINE Alu 52 298 -14 774 245 24 36 chr12 126740166 126740415 -17542074 + L1M4 LINE L1 4740 4985 -1161 374 37 0 37 chr12 126740418 126740472 -17542017 - MADE1 DNA Mariner 0 80 29 2302 99 0 0 chr12 126740472 126740765 -17541724 + AluSq SINE Alu 1 293 -20 1677 112 4 9 chr12 126740867 126741099 -17541390 - AluSq SINE Alu -82 231 1 510 280 86 0 chr12 126741099 126741274 -17541215 - L2 LINE L2 -503 2811 2622 931 169 6 29 chr12 126741277 126741449 -17541040 + AluJb SINE Alu 136 303 -9 2061 138 0 7 chr12 126741449 126741746 -17540743 + AluJo SINE Alu 1 295 -17 265 221 174 0 chr12 126741769 126741855 -17540634 - L2 LINE L2 -713 2601 2501 888 320 129 12 chr12 126741905 126742423 -17540066 - MLT1K LTR MaLR 0 588 10 285 194 0 15 chr12 126742715 126742782 -17539707 + MIR SINE MIR 59 124 -84 766 125 52 83 chr12 126742908 126742970 -17539519 - MER53 DNA DNA 0 189 127 2323 94 0 7 chr12 126742970 126743268 -17539221 - AluY SINE Alu -15 296 1 766 125 52 83 chr12 126743268 126743397 -17539092 - MER53 DNA DNA -62 127 4 2312 113 0 0 chr12 126743536 126743846 -17538643 - AluSx SINE Alu -2 310 1 1960 149 0 20 chr12 126743848 126744143 -17538346 - AluJb SINE Alu -23 289 1 2188 128 0 0 chr12 126744283 126744572 -17537917 - AluSq SINE Alu -24 289 1 307 300 150 7 chr12 126744620 126744760 -17537729 + MIR SINE MIR 86 245 -17 198 103 0 0 chr12 126745630 126745659 -17536830 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2040 128 7 0 chr12 126745661 126745943 -17536546 - AluSx SINE Alu -28 284 1 303 314 0 10 chr12 126746028 126746130 -17536359 + MER5A DNA MER1_type 3 103 -86 1733 152 42 3 chr12 126746243 126746526 -17535963 + AluSx SINE Alu 1 294 -18 2402 172 17 40 chr12 126746528 126747399 -17535090 - L1MB4 LINE L1 0 6180 5669 443 280 76 52 chr12 126746793 126747007 -17535482 - L1ME4a LINE L1 -202 5919 5695 2065 126 75 29 chr12 126747007 126747355 -17535134 - THE1B LTR MaLR 0 364 1 443 280 76 52 chr12 126747355 126747429 -17535060 - L1ME4a LINE L1 -426 5695 5624 182 250 0 182 chr12 126747438 126747526 -17534963 - MIR SINE MIR -76 132 61 247 227 159 11 chr12 126747732 126747820 -17534669 + MIR SINE MIR 156 256 -6 3196 142 24 42 chr12 126747826 126748093 -17534396 + L1MB3 LINE L1 5573 5843 -340 1980 133 0 13 chr12 126748093 126748402 -17534087 + AluJb SINE Alu 1 305 -7 3196 142 24 42 chr12 126748402 126748748 -17533741 + L1MB3 LINE L1 5843 6175 -8 1891 147 3 3 chr12 126748866 126749166 -17533323 - AluSx SINE Alu -12 300 1 2089 117 0 13 chr12 126749178 126749487 -17533002 - AluSx SINE Alu -7 305 1 23 0 0 0 chr12 126749494 126749517 -17532972 + AT_rich Low_complexity Low_complexity 1 23 0 672 274 70 21 chr12 126749539 126749768 -17532721 - MIR SINE MIR -3 259 25 1691 112 8 4 chr12 126750370 126750621 -17531868 - AluSx SINE Alu -21 291 40 537 144 0 0 chr12 126751169 126751259 -17531230 + (GGA)n Simple_repeat Simple_repeat 1 90 0 219 69 0 0 chr12 126751481 126751510 -17530979 + (CTG)n Simple_repeat Simple_repeat 3 31 0 27 62 0 0 chr12 126751661 126751709 -17530780 + GC_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr12 126752155 126752175 -17530314 + (TG)n Simple_repeat Simple_repeat 2 21 0 208 210 32 0 chr12 126752180 126752242 -17530247 + (TTTG)n Simple_repeat Simple_repeat 4 67 0 799 123 14 29 chr12 126752500 126752638 -17529851 + AluJo SINE Alu 1 136 -176 1183 188 68 0 chr12 126752650 126752884 -17529605 + MER58B DNA MER1_type 92 341 0 313 302 62 31 chr12 126752891 126753020 -17529469 + L2 LINE L2 2935 3067 -246 1285 39 0 7 chr12 126753221 126753374 -17529115 - L1PA10 LINE L1 -8 6160 6009 2016 115 26 3 chr12 126753408 126753712 -17528777 + AluSq SINE Alu 1 311 -2 523 306 70 15 chr12 126753852 126754179 -17528310 - L1MCc LINE L1 -4899 1524 1180 584 255 99 25 chr12 126754875 126755232 -17527257 + LTR67 LTR ERVL 38 462 -95 1355 153 54 125 chr12 126755259 126755311 -17527178 - MLT1B LTR MaLR -16 374 320 2110 103 3 32 chr12 126755311 126755621 -17526868 + AluSg SINE Alu 2 302 -8 1355 153 54 125 chr12 126755621 126755960 -17526529 - MLT1B LTR MaLR -70 320 11 289 217 17 0 chr12 126755977 126756037 -17526452 + LTR67 LTR ERVL 496 556 -1 665 257 122 23 chr12 126756053 126756267 -17526222 + MER102b DNA MER1_type 107 341 0 2006 109 10 20 chr12 126756664 126756967 -17525522 + AluSx SINE Alu 1 300 -12 839 127 0 47 chr12 126758034 126758184 -17524305 - FLAM_C SINE Alu 0 143 1 2012 117 47 0 chr12 126758355 126758653 -17523836 + AluSx SINE Alu 1 312 0 827 183 0 0 chr12 126758664 126758801 -17523688 + FAM SINE Alu 34 170 -15 293 148 3 0 chr12 126758876 126758926 -17523563 + FLAM_A SINE Alu 84 126 -7 357 330 123 28 chr12 126759340 126759519 -17522970 - MER91A DNA MER1_type 0 196 1 3195 176 59 11 chr12 126759540 126759668 -17522821 - L1MB5 LINE L1 0 6174 6054 2303 95 0 0 chr12 126759668 126759974 -17522515 + AluSg SINE Alu 1 306 -4 3195 176 59 11 chr12 126759974 126760487 -17522002 - L1MB5 LINE L1 -120 6054 5502 2129 112 20 0 chr12 126760576 126760880 -17521609 + AluSg SINE Alu 1 310 0 260 343 78 0 chr12 126760972 126761074 -17521415 - MLT1K LTR MaLR 0 588 479 759 303 19 62 chr12 126761186 126761470 -17521019 - MLT1K LTR MaLR -274 314 44 1987 113 27 3 chr12 126761470 126761762 -17520727 + AluSx SINE Alu 3 301 -11 759 303 19 62 chr12 126761762 126761797 -17520692 - MLT1K LTR MaLR -544 44 9 266 184 0 0 chr12 126762069 126762118 -17520371 - AluSc SINE Alu -7 292 244 875 92 15 0 chr12 126762219 126762349 -17520140 + AluSg/x SINE Alu 180 311 -1 1846 175 85 8 chr12 126762360 126762761 -17519728 + L1MB5 LINE L1 5743 6174 0 715 298 31 55 chr12 126762824 126763150 -17519339 + MER102b DNA MER1_type 12 329 -12 812 207 5 88 chr12 126763346 126763395 -17519094 - MER5B DNA MER1_type 0 178 127 1543 171 46 4 chr12 126763395 126763552 -17518937 - AluJo SINE Alu -19 293 117 185 83 28 0 chr12 126763552 126763588 -17518901 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1543 171 46 4 chr12 126763588 126763711 -17518778 - AluJo SINE Alu -195 117 1 812 207 5 88 chr12 126763711 126763854 -17518635 - MER5B DNA MER1_type -51 127 2 1065 118 0 0 chr12 126763865 126764038 -17518451 - AluSg/x SINE Alu 0 302 130 636 64 0 0 chr12 126764149 126764227 -17518262 + AluSp/q SINE Alu 221 298 -15 1587 155 3 57 chr12 126764407 126764704 -17517785 + AluJo SINE Alu 9 289 -23 1804 83 114 0 chr12 126764826 126765090 -17517399 - AluSx SINE Alu -6 306 13 2753 10 0 0 chr12 126765147 126765456 -17517033 - AluYa5 SINE Alu -2 309 1 435 176 82 123 chr12 126766417 126766511 -17515978 + Charlie8 DNA MER1_type 37 133 -208 1473 190 14 7 chr12 126766511 126766801 -17515688 + AluJo SINE Alu 3 294 -18 675 167 92 0 chr12 126766803 126766923 -17515566 + FLAM_C SINE Alu 1 131 -2 435 176 82 123 chr12 126766923 126766995 -17515494 + Charlie8 DNA MER1_type 134 199 -142 1957 92 0 88 chr12 126767448 126767765 -17514724 + AluSx SINE Alu 1 289 -23 2628 35 0 3 chr12 126767843 126768155 -17514334 + AluY SINE Alu 1 311 0 249 284 0 37 chr12 126768176 126768257 -17514232 + Charlie8 DNA MER1_type 1349 1426 -991 429 248 16 24 chr12 126768345 126768470 -17514019 - MLT1L LTR MaLR -340 275 152 394 220 24 172 chr12 126768479 126768537 -17513952 - MER5B DNA MER1_type 0 178 113 2454 70 3 3 chr12 126768537 126768850 -17513639 + AluSp SINE Alu 1 313 0 394 220 24 172 chr12 126768850 126768865 -17513624 - MER5B DNA MER1_type -65 113 97 2059 100 0 7 chr12 126768865 126769155 -17513334 + AluSx SINE Alu 1 288 -24 207 0 0 0 chr12 126769164 126769187 -17513302 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 394 220 24 172 chr12 126769187 126769311 -17513178 - MER5B DNA MER1_type -90 88 1 373 256 23 83 chr12 126769311 126769417 -17513072 - MIR3 SINE MIR -44 164 67 712 211 0 0 chr12 126769468 126769596 -17512893 + FLAM_C SINE Alu 1 128 -5 1570 166 136 55 chr12 126769716 126769854 -17512635 + LTR54B LTR ERV1 3 128 -370 1707 151 3 50 chr12 126769854 126770173 -17512316 + AluSx SINE Alu 3 306 -6 1570 166 136 55 chr12 126770173 126770429 -17512060 + LTR54B LTR ERV1 128 441 -57 2215 101 0 3 chr12 126770429 126770736 -17511753 + AluSq SINE Alu 1 306 -7 1570 166 136 55 chr12 126770736 126770797 -17511692 + LTR54B LTR ERV1 441 496 -2 1709 157 0 26 chr12 126770832 126771137 -17511352 + AluJb SINE Alu 1 297 -15 606 243 38 49 chr12 126771194 126771379 -17511110 - MER5A DNA MER1_type -3 186 4 541 278 153 19 chr12 126771379 126771567 -17510922 + MIR SINE MIR 44 259 -3 451 259 42 49 chr12 126771570 126771713 -17510776 - L2 LINE L2 0 3313 3172 232 296 28 0 chr12 126772054 126772125 -17510364 - MIR SINE MIR -39 223 151 2080 131 58 14 chr12 126772581 126772940 -17509549 - THE1C LTR MaLR 0 375 1 842 236 0 6 chr12 126773135 126773317 -17509172 + AluJb SINE Alu 122 302 -10 2193 78 20 0 chr12 126773928 126774222 -17508267 + AluSx SINE Alu 1 300 -12 451 329 65 0 chr12 126775583 126775753 -17506736 - MIR SINE MIR -74 188 8 818 173 6 6 chr12 126775917 126776073 -17506416 - FRAM SINE Alu -17 159 4 2234 159 16 26 chr12 126776079 126776511 -17505978 - L1MB5 LINE L1 -37 6137 5719 987 206 32 28 chr12 126776568 126776786 -17505703 - MER20 DNA MER1_type 0 219 1 1083 133 0 44 chr12 126776850 126777031 -17505458 - AluSx SINE Alu -19 293 121 809 132 0 33 chr12 126777118 126777239 -17505250 - AluSx SINE Alu -194 118 2 355 208 28 0 chr12 126777615 126777687 -17504802 + L2 LINE L2 3233 3306 -7 697 211 182 25 chr12 126778296 126778709 -17503780 + LTR33 LTR ERVL 22 521 0 1492 99 0 5 chr12 126779284 126779485 -17503004 - AluSx SINE Alu -112 200 1 182 262 0 0 chr12 126779628 126779670 -17502819 - L2 LINE L2 0 3313 3272 3945 165 62 27 chr12 126780075 126780117 -17502372 - L1MB4 LINE L1 0 6180 6141 1744 159 7 14 chr12 126780117 126780413 -17502076 - AluJo SINE Alu -18 294 1 3945 165 62 27 chr12 126780413 126781194 -17501295 - L1MB4 LINE L1 -39 6141 5328 2134 108 0 7 chr12 126781213 126781518 -17500971 - AluSx SINE Alu -9 303 1 1662 131 7 88 chr12 126781522 126781853 -17500636 - AluSx SINE Alu 0 306 1 2174 136 106 0 chr12 126781873 126782004 -17500485 - L1MA9 LINE L1 0 6312 6196 444 67 0 0 chr12 126782004 126782064 -17500425 + (TG)n Simple_repeat Simple_repeat 1 60 0 2174 136 106 0 chr12 126782064 126782337 -17500152 - L1MA9 LINE L1 -116 6196 5865 372 283 80 7 chr12 126782338 126782476 -17500013 - L3 LINE CR1 -154 1423 1276 2189 103 0 0 chr12 126783013 126783314 -17499175 + AluSx SINE Alu 2 302 -10 450 235 52 20 chr12 126783503 126783656 -17498833 - L1MC4a LINE L1 -1861 5947 5790 457 350 34 36 chr12 126783754 126784004 -17498485 - MIR SINE MIR -1 261 1 354 206 36 8 chr12 126784122 126784236 -17498253 + MIR SINE MIR 77 141 -67 2053 121 7 7 chr12 126784241 126784548 -17497941 + AluSx SINE Alu 1 307 -5 651 269 26 42 chr12 126785002 126785195 -17497294 - MIR SINE MIR -35 227 38 1954 119 3 26 chr12 126785229 126785532 -17496957 + AluSx SINE Alu 1 296 -16 381 315 61 38 chr12 126785532 126785745 -17496744 + L1ME4a LINE L1 5870 6087 -34 731 174 0 0 chr12 126785753 126785868 -17496621 - FLAM_A SINE Alu -17 125 11 312 296 121 30 chr12 126786020 126786152 -17496337 - MIR SINE MIR -31 231 88 1400 139 8 16 chr12 126786246 126786504 -17495985 + AluJo SINE Alu 43 298 -14 281 305 42 0 chr12 126786505 126786593 -17495896 - MER5A DNA MER1_type -56 133 25 2049 109 24 0 chr12 126786993 126787287 -17495202 + AluSx SINE Alu 2 302 -10 2196 101 0 0 chr12 126787388 126787684 -17494805 - AluSx SINE Alu -16 296 1 771 241 93 21 chr12 126787802 126788039 -17494450 + MER5C DNA MER1_type 71 324 0 370 281 36 46 chr12 126788125 126788153 -17494336 - MIR SINE MIR -64 144 117 1897 158 0 13 chr12 126788153 126788456 -17494033 - AluJo SINE Alu -13 299 1 370 281 36 46 chr12 126788456 126788609 -17493880 - MIR SINE MIR -91 117 2 22 0 0 0 chr12 126789255 126789277 -17493212 + AT_rich Low_complexity Low_complexity 1 22 0 229 275 64 16 chr12 126789370 126789501 -17492988 - MIR SINE MIR -63 145 51 372 268 218 50 chr12 126789584 126789901 -17492588 + L2 LINE L2 2933 3302 -11 245 176 55 11 chr12 126790652 126790727 -17491762 + (TA)n Simple_repeat Simple_repeat 1 82 -13 1748 138 78 38 chr12 126790727 126791016 -17491473 - MER46B DNA MER2_type -2495 236 54 1978 91 0 0 chr12 126791016 126791269 -17491220 + AluSx SINE Alu 39 291 -21 1748 138 78 38 chr12 126791269 126791326 -17491163 - MER46B DNA MER2_type -2677 54 1 245 176 55 11 chr12 126791326 126791341 -17491148 + (TA)n Simple_repeat Simple_repeat 82 95 0 559 259 114 0 chr12 126791451 126791617 -17490872 - MIR SINE MIR 0 262 78 299 214 86 14 chr12 126791683 126791753 -17490736 - MER5A DNA MER1_type -5 184 110 * 337 249 42 103 chr12 126791696 126791861 -17490628 + MER5A DNA MER1_type 35 189 0 1443 124 0 9 chr12 126793443 126793661 -17488828 + AluJb SINE Alu 88 303 -9 2184 87 3 0 chr12 126793808 126794095 -17488394 + AluSp SINE Alu 21 308 -5 23 0 0 0 chr12 126794156 126794179 -17488310 + AT_rich Low_complexity Low_complexity 1 23 0 590 267 0 0 chr12 126794188 126794319 -17488170 - MER3 DNA MER1_type -55 154 24 204 40 0 0 chr12 126794634 126794659 -17487830 + (T)n Simple_repeat Simple_repeat 1 25 0 1699 79 0 13 chr12 126794667 126794894 -17487595 - AluSx SINE Alu -88 224 1 260 241 0 0 chr12 126794897 126794951 -17487538 - AluJ/monomer SINE Alu -6 302 249 186 118 0 0 chr12 126795080 126795114 -17487375 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 340 244 182 27 chr12 126795528 126795689 -17486800 - MIR SINE MIR -62 146 10 292 251 32 144 chr12 126796043 126796230 -17486259 - L2 LINE L2 -99 3173 3008 257 302 0 16 chr12 126796331 126796394 -17486095 + L3 LINE CR1 1511 1572 -5 972 142 2 5 chr12 126796413 126796855 -17485634 + (TCCA)n Simple_repeat Simple_repeat 3 618 0 622 177 0 11 chr12 126796868 126797043 -17485446 + (TCCA)n Simple_repeat Simple_repeat 3 175 0 251 297 40 0 chr12 126797245 126797319 -17485170 + MIR SINE MIR 180 256 -6 309 300 25 0 chr12 126797320 126797400 -17485089 - L2 LINE L2 -31 3241 3160 239 280 168 9 chr12 126797499 126797606 -17484883 - L2 LINE L2 -295 2977 2854 1440 122 0 0 chr12 126797618 126797823 -17484666 + AluSg/x SINE Alu 102 306 -6 301 292 31 31 chr12 126797823 126797953 -17484536 - L2 LINE L2 -473 2841 2712 194 200 0 0 chr12 126798961 126799001 -17483488 + MIR SINE MIR 90 129 -79 263 260 26 13 chr12 126799065 126799142 -17483347 - MIR SINE MIR -86 122 45 700 259 68 17 chr12 126799177 126799413 -17483076 - MIR SINE MIR -13 249 2 466 201 26 22 chr12 126799452 126799583 -17482906 + (TA)n Simple_repeat Simple_repeat 1 130 -1132 1202 92 82 20 chr12 126799583 126799737 -17482752 + L1PA8 LINE L1 5952 6122 -50 2365 78 3 7 chr12 126799737 126800033 -17482456 + AluY SINE Alu 1 295 -16 1202 92 82 20 chr12 126800033 126800073 -17482416 + L1PA8 LINE L1 6122 6158 -14 466 201 26 22 chr12 126800073 126800270 -17482219 + (TA)n Simple_repeat Simple_repeat 130 325 -937 1867 168 58 3 chr12 126800270 126800598 -17481891 + MER7A DNA MER2_type 1 344 -2 466 201 26 22 chr12 126800598 126800709 -17481780 + (TA)n Simple_repeat Simple_repeat 325 1262 0 1912 183 0 0 chr12 126800835 126801147 -17481342 - AluJo SINE Alu 0 312 1 824 139 7 36 chr12 126801157 126801324 -17481165 - FLAM_C SINE Alu 0 133 1 371 266 47 8 chr12 126801510 126801638 -17480851 - MLT1L LTR MaLR -31 584 452 268 245 241 38 chr12 126801725 126801962 -17480527 - MLT1L LTR MaLR -330 285 1 434 202 135 0 chr12 126802257 126802361 -17480128 + L1MB3 LINE L1 5893 6010 -173 1359 189 53 68 chr12 126802364 126802768 -17479721 + MLT1A2 LTR MaLR 10 386 -4 960 104 13 19 chr12 126802782 126802936 -17479553 + L1MB3 LINE L1 6029 6181 -2 253 311 8 61 chr12 126802966 126803098 -17479391 - MIR SINE MIR -67 141 17 1049 219 9 14 chr12 126803647 126803866 -17478623 + MER20 DNA MER1_type 1 218 -1 849 157 10 76 chr12 126803880 126804077 -17478412 - MER5A DNA MER1_type -5 184 1 194 195 0 24 chr12 126804726 126804767 -17477722 + MIR SINE MIR 20 59 -149 2305 107 3 3 chr12 126805058 126805366 -17477123 + AluSq SINE Alu 1 308 -5 747 194 0 8 chr12 126805383 126805512 -17476977 + FLAM_C SINE Alu 5 132 -11 1931 136 36 0 chr12 126805629 126805749 -17476740 + AluJb SINE Alu 1 115 -197 183 42 0 0 chr12 126805749 126805773 -17476716 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1931 136 36 0 chr12 126805773 126805932 -17476557 + AluJb SINE Alu 115 290 -22 2215 112 0 16 chr12 126805941 126806244 -17476245 + AluSq SINE Alu 1 298 -15 1230 187 4 9 chr12 126806477 126806702 -17475787 + MER58A DNA MER1_type 1 224 0 225 0 0 0 chr12 126806712 126806737 -17475752 + (A)n Simple_repeat Simple_repeat 1 25 0 2159 131 3 0 chr12 126806942 126807240 -17475249 - AluJb SINE Alu -12 300 2 375 277 54 14 chr12 126807442 126807590 -17474899 + MIR SINE MIR 47 200 -62 1153 160 74 62 chr12 126807676 126807829 -17474660 - MER96B DNA MER1_type? 0 417 267 2619 46 0 3 chr12 126807829 126808134 -17474355 - AluY SINE Alu -7 304 1 1153 160 74 62 chr12 126808134 126808305 -17474184 - MER96B DNA MER1_type? -150 267 89 742 184 0 15 chr12 126808308 126808444 -17474045 + FLAM_C SINE Alu 2 135 -8 1351 165 112 96 chr12 126808453 126808872 -17473617 + MSTA LTR MaLR 1 426 -2 1590 161 11 31 chr12 126808874 126809160 -17473329 + AluJo SINE Alu 3 282 -30 323 222 12 25 chr12 126809182 126809263 -17473226 - MER96B DNA MER1_type? -337 80 1 240 115 49 49 chr12 126809312 126809373 -17473116 - MER5B DNA MER1_type 0 178 118 3795 156 29 28 chr12 126809463 126809702 -17472787 + L1MB7 LINE L1 5447 5684 -500 2075 136 7 0 chr12 126809702 126809988 -17472501 + AluSq SINE Alu 1 288 -25 3795 156 29 28 chr12 126809988 126810384 -17472105 + L1MB7 LINE L1 5684 6086 -98 2286 110 0 0 chr12 126810384 126810685 -17471804 - AluSq SINE Alu -12 301 1 3795 156 29 28 chr12 126810685 126810764 -17471725 + L1MB7 LINE L1 6086 6163 -21 256 93 0 47 chr12 126810765 126810808 -17471681 - MER5B DNA MER1_type -124 54 14 2069 115 41 10 chr12 126812250 126812545 -17469944 - AluSx SINE Alu -8 304 1 252 98 73 0 chr12 126812563 126812604 -17469885 - L1MA2 LINE L1 -4 6300 6257 * 1532 75 14 9 chr12 126812603 126812816 -17469673 + L1MA1 LINE L1 5744 5957 -345 2051 133 17 7 chr12 126813137 126813439 -17469050 + AluJo SINE Alu 1 305 -7 2470 202 40 48 chr12 126813524 126814122 -17468367 + MLT1E LTR MaLR 1 593 0 236 290 0 0 chr12 126814431 126814493 -17467996 - MIR SINE MIR -5 257 196 330 121 133 24 chr12 126815052 126815135 -17467354 + MER96B DNA MER1_type? 1 92 -325 2068 150 3 3 chr12 126815222 126815529 -17466960 - AluSx SINE Alu -5 307 1 1605 129 26 117 chr12 126816103 126816445 -17466044 + AluYb8 SINE Alu 1 311 -7 1182 75 25 0 chr12 126816517 126816676 -17465813 + L1PA7 LINE L1 5989 6151 -3 720 271 107 4 chr12 126816770 126816995 -17465494 + MIR SINE MIR 9 256 -6 894 185 16 16 chr12 126817287 126817476 -17465013 + MER53 DNA DNA 1 189 0 1697 180 25 0 chr12 126817650 126817928 -17464561 + AluJo SINE Alu 1 285 -27 180 0 0 0 chr12 126817928 126817948 -17464541 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 542 340 5 5 chr12 126818492 126818689 -17463800 - MIR SINE MIR -16 246 50 2339 91 0 0 chr12 126818826 126819112 -17463377 + AluSx SINE Alu 1 286 -26 186 118 0 0 chr12 126819112 126819146 -17463343 + (CATAA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr12 126819883 126819903 -17462586 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 311 222 28 0 chr12 126819904 126819976 -17462513 - L2 LINE L2 -13 3300 3227 2290 104 3 10 chr12 126819995 126820303 -17462186 + AluSq SINE Alu 1 306 -7 1744 111 13 0 chr12 126820311 126820545 -17461944 + AluSq SINE Alu 59 295 -18 425 182 304 27 chr12 126820626 126820690 -17461799 - MER5A DNA MER1_type 0 189 144 1582 115 112 8 chr12 126820690 126820950 -17461539 + AluJb SINE Alu 1 287 -25 425 182 304 27 chr12 126820950 126821033 -17461456 - MER5A DNA MER1_type -45 144 1 348 310 0 18 chr12 126821047 126821166 -17461323 - MIR SINE MIR -58 150 37 281 59 0 0 chr12 126822670 126822704 -17459785 + MADE1 DNA Mariner 47 80 0 258 350 51 13 chr12 126822836 126822993 -17459496 - MIR3 SINE MIR -12 196 34 404 269 27 27 chr12 126823400 126823549 -17458940 - MER113 DNA MER1_type? -3 518 370 2080 133 0 17 chr12 126823551 126823852 -17458637 + AluSx SINE Alu 5 300 -12 1920 153 3 13 chr12 126823877 126824178 -17458311 + AluJb SINE Alu 6 303 -9 359 222 0 25 chr12 126824188 126824269 -17458220 - MER113 DNA MER1_type? -152 369 291 286 247 113 0 chr12 126824287 126824384 -17458105 + MIR SINE MIR 147 254 -8 208 343 0 0 chr12 126824954 126825021 -17457468 + L2 LINE L2 2985 3051 -221 192 184 0 0 chr12 126825052 126825101 -17457388 + CT-rich Low_complexity Low_complexity 2 50 0 225 0 0 0 chr12 126825101 126825126 -17457363 + (CA)n Simple_repeat Simple_repeat 1 25 0 622 248 73 82 chr12 126825170 126825485 -17457004 + MLT1I LTR MaLR 98 409 0 1414 196 120 31 chr12 126827330 126827754 -17454735 + MLT1C LTR MaLR 6 467 0 240 283 22 22 chr12 126827936 126828028 -17454461 + MIR SINE MIR 63 154 -108 2049 145 7 0 chr12 126828073 126828370 -17454119 + AluSx SINE Alu 1 299 -13 1881 156 14 3 chr12 126828473 126828762 -17453727 - AluJo SINE Alu -20 292 1 1086 162 95 34 chr12 126829072 126829388 -17453101 - MLT1A1 LTR MaLR -16 374 1 348 246 0 0 chr12 126829716 126829781 -17452708 + AluJo SINE Alu 109 173 -129 2351 109 0 0 chr12 126830052 126830363 -17452126 - AluSx SINE Alu -1 311 1 1190 169 5 27 chr12 126830891 126831110 -17451379 - MER20 DNA MER1_type -2 217 4 1571 166 57 28 chr12 126831185 126831468 -17451021 + AluJo SINE Alu 1 291 -21 280 174 0 0 chr12 126831563 126831609 -17450880 - FLAM_A SINE Alu -26 107 62 453 294 38 19 chr12 126831786 126831981 -17450508 + Charlie8 DNA MER1_type 72 222 -2195 2472 70 3 0 chr12 126832433 126832731 -17449758 + AluSp SINE Alu 1 299 -14 1517 147 0 105 chr12 126832752 126833092 -17449397 + AluJo SINE Alu 4 310 0 390 262 19 9 chr12 126833399 126833506 -17448983 + L1MC/D LINE L1 5680 5787 -2021 1137 279 100 5 chr12 126833506 126833875 -17448614 + MLT1I LTR MaLR 6 409 0 342 207 49 0 chr12 126833915 126833997 -17448492 + L1M4 LINE L1 2435 2520 -3626 1760 187 0 3 chr12 126834035 126834319 -17448170 - AluJb SINE Alu -22 290 8 504 306 19 0 chr12 126834457 126834614 -17447875 - MIR SINE MIR -13 249 90 585 274 11 17 chr12 126834977 126835152 -17447337 + MIR SINE MIR 44 217 -45 497 198 0 0 chr12 126835351 126835442 -17447047 - FLAM SINE Alu -13 130 40 641 302 78 4 chr12 126835459 126835691 -17446798 + MIR SINE MIR 14 262 0 203 219 16 31 chr12 126836680 126836744 -17445745 - L2 LINE L2 -80 3233 3171 1748 201 68 14 chr12 126836746 126837133 -17445356 - MER82 DNA MER2_type -1 652 165 274 0 73 0 chr12 126837133 126837174 -17445315 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 1748 201 68 14 chr12 126837174 126837330 -17445159 - MER82 DNA MER2_type -488 165 19 1345 176 126 15 chr12 126837332 126837593 -17444896 + AluJo SINE Alu 2 291 -21 204 206 0 0 chr12 126837597 126837631 -17444858 + G-rich Low_complexity Low_complexity 4 37 0 2315 84 3 3 chr12 126837804 126838102 -17444387 - AluSp SINE Alu -15 298 1 1921 115 52 28 chr12 126838294 126838582 -17443907 - AluSx SINE Alu -17 295 1 2001 119 0 23 chr12 126889464 126889479 -17393010 - AluSx SINE Alu -17 295 281 426 39 0 0 chr12 126889479 126889531 -17392958 + (TG)n Simple_repeat Simple_repeat 1 52 0 2001 119 0 23 chr12 126889531 126889817 -17392672 - AluSx SINE Alu -31 281 1 2376 87 3 0 chr12 126890035 126890345 -17392144 - AluSp SINE Alu -2 311 1 2213 113 3 3 chr12 126890495 126890796 -17391693 + AluSc SINE Alu 1 301 -8 195 258 86 62 chr12 126890800 126890928 -17391561 - L2 LINE L2 -296 2976 2846 779 209 62 139 chr12 126891037 126891410 -17391079 - MLT1J LTR MaLR -55 456 113 2171 122 0 0 chr12 126891487 126891773 -17390716 + AluSx SINE Alu 9 294 -18 396 315 68 7 chr12 126891910 126892001 -17390488 + MIR3 SINE MIR 48 153 -55 1770 145 0 84 chr12 126892001 126892194 -17390295 - AluSx SINE Alu -8 304 149 2105 129 0 7 chr12 126892194 126892504 -17389985 - AluSx SINE Alu -4 308 1 1770 145 0 84 chr12 126892504 126892642 -17389847 - AluSx SINE Alu -163 149 1 396 315 68 7 chr12 126892642 126892696 -17389793 + MIR3 SINE MIR 153 202 -6 2029 118 38 3 chr12 126893118 126893406 -17389083 - AluSx SINE Alu -14 298 1 2187 117 7 0 chr12 126893669 126893967 -17388522 - AluSq SINE Alu -13 300 1 2380 102 0 0 chr12 126894316 126894620 -17387869 + AluSx SINE Alu 6 309 -3 3082 193 39 94 chr12 126894751 126895695 -17386794 + L1MA7 LINE L1 5380 6271 -20 249 360 73 0 chr12 126896601 126896751 -17385738 - L2 LINE L2 -829 2485 2325 24 67 0 0 chr12 126897135 126897180 -17385309 + AT_rich Low_complexity Low_complexity 1 45 0 2385 92 20 0 chr12 126898705 126899011 -17383478 + AluSx SINE Alu 1 312 0 414 318 93 23 chr12 126899036 126899294 -17383195 - L2 LINE L2 -189 3083 2808 2240 61 0 0 chr12 126899449 126899713 -17382776 + AluY SINE Alu 45 308 -3 356 231 0 0 chr12 126900522 126900587 -17381902 + L2 LINE L2 3249 3313 0 525 118 0 24 chr12 126900849 126900934 -17381555 - AluS SINE Alu -5 307 225 2187 78 0 0 chr12 126901295 126901628 -17380861 - AluY SINE Alu 0 333 1 305 238 0 16 chr12 126901804 126901867 -17380622 + L2 LINE L2 3207 3268 -4 285 116 0 0 chr12 126902277 126902320 -17380169 - LTR54 LTR ERV1 -67 443 401 1921 110 0 11 chr12 126902350 126902632 -17379857 + AluSg SINE Alu 1 279 -31 213 39 0 0 chr12 126902762 126902788 -17379701 + (A)n Simple_repeat Simple_repeat 1 26 0 468 328 15 0 chr12 126903407 126903541 -17378948 - L2 LINE L2 -1 3271 3136 894 94 0 0 chr12 126903649 126903766 -17378723 + FLAM_C SINE Alu 2 118 -15 1870 130 23 10 chr12 126904048 126904356 -17378133 + AluSx SINE Alu 1 312 0 583 176 30 103 chr12 126905833 126905998 -17376491 + MER3 DNA MER1_type 57 209 0 282 241 0 0 chr12 126905955 126906009 -17376480 - MER3 DNA MER1_type -119 90 37 * 374 92 0 15 chr12 126907822 126907887 -17374602 + (TG)n Simple_repeat Simple_repeat 1 64 0 240 59 0 0 chr12 126908437 126908471 -17374018 + (CA)n Simple_repeat Simple_repeat 1 34 0 31 0 0 0 chr12 126909960 126909991 -17372498 + AT_rich Low_complexity Low_complexity 1 31 0 1280 126 0 0 chr12 126911480 126911663 -17370826 - AluSg/x SINE Alu -45 267 85 218 349 0 0 chr12 126911675 126911738 -17370751 + L2 LINE L2 3201 3263 -9 1955 106 34 3 chr12 126911775 126912067 -17370422 - AluSq SINE Alu -12 301 1 193 161 0 0 chr12 126912390 126912421 -17370068 - MIR3 SINE MIR -27 181 151 353 262 58 10 chr12 126912426 126912529 -17369960 + MER117 DNA MER1_type 52 159 -38 382 308 17 17 chr12 126912544 126912664 -17369825 - MIR3 SINE MIR -52 156 37 1320 128 117 26 chr12 126913090 126913356 -17369133 + AluJo SINE Alu 1 290 -22 515 228 88 78 chr12 126913610 126913803 -17368686 - MER102b DNA MER1_type -15 326 132 23 68 0 0 chr12 126915281 126915325 -17367164 + GC_rich Low_complexity Low_complexity 1 44 0 2235 73 0 0 chr12 126915916 126916204 -17366285 + AluSg SINE Alu 1 288 -22 1828 146 6 19 chr12 126916351 126916570 -17365919 - AluSq SINE Alu -1 312 97 8151 41 9 0 chr12 126916570 126917530 -17364959 + LTR5 LTR ERVK 1 969 0 1828 146 6 19 chr12 126917530 126917626 -17364863 - AluSq SINE Alu -216 97 1 757 192 86 7 chr12 126917631 126917782 -17364707 - FRAM SINE Alu 0 166 4 180 283 0 19 chr12 126917853 126917906 -17364583 + L2 LINE L2 3262 3313 0 1766 150 4 0 chr12 126918006 126918279 -17364210 + AluSx SINE Alu 1 274 -38 405 0 0 0 chr12 126918287 126918332 -17364157 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr12 126918332 126918353 -17364136 + AT_rich Low_complexity Low_complexity 1 21 0 1964 136 0 3 chr12 126918521 126918822 -17363667 - AluSx SINE Alu -12 300 1 1923 100 4 0 chr12 126919281 126919552 -17362937 - AluSp SINE Alu -41 272 1 304 169 17 17 chr12 126919554 126919613 -17362876 - AluY SINE Alu -115 186 128 1920 146 7 0 chr12 126919616 126919917 -17362572 - AluSx SINE Alu -9 303 1 1928 103 0 86 chr12 126920389 126920728 -17361761 - AluSg SINE Alu 0 310 1 1074 68 0 0 chr12 126920732 126920864 -17361625 - AluSp SINE Alu -181 132 1 524 224 9 26 chr12 126920864 126920980 -17361509 - MLT1E LTR MaLR -64 529 416 328 253 13 13 chr12 126920980 126921055 -17361434 - MER76 LTR ERV 0 688 614 1690 144 0 78 chr12 126921071 126921390 -17361099 + AluJb SINE Alu 14 307 -5 1751 216 13 18 chr12 126921452 126921836 -17360653 - MER76 LTR ERV -306 382 1 915 191 93 172 chr12 126921836 126922079 -17360410 - MLT1E LTR MaLR -179 414 152 2372 32 0 0 chr12 126922079 126922396 -17360093 - AluY SINE Alu 0 317 1 915 191 93 172 chr12 126922396 126922451 -17360038 - MLT1E LTR MaLR -441 152 94 1695 164 7 3 chr12 126922451 126922738 -17359751 - AluJo SINE Alu -24 288 1 915 191 93 172 chr12 126922738 126922886 -17359603 - MLT1E LTR MaLR -499 94 3 387 286 84 45 chr12 126922903 126923054 -17359435 + MLT1K LTR MaLR 358 520 -68 2043 119 7 0 chr12 126923054 126923373 -17359116 - AluSq SINE Alu 0 321 1 387 286 84 45 chr12 126923373 126923397 -17359092 + MLT1K LTR MaLR 520 542 -46 551 143 12 0 chr12 126923398 126923482 -17359007 + AluJ/FLAM SINE Alu 3 87 -225 1109 132 0 23 chr12 126923498 126923672 -17358817 - AluJo SINE Alu -142 170 1 6941 43 39 0 chr12 126923795 126925327 -17357162 + L1PA6 LINE L1 4584 6154 0 1045 166 57 5 chr12 126925338 126925549 -17356940 + L1ME LINE L1 5548 5769 -397 2309 91 3 0 chr12 126925571 126925878 -17356611 + AluSp SINE Alu 1 308 -5 2156 98 0 0 chr12 126926106 126926401 -17356088 - AluSx SINE Alu -17 295 1 2507 46 0 3 chr12 126926551 126926855 -17355634 - AluY SINE Alu -6 305 3 2149 109 0 3 chr12 126927120 126927422 -17355067 - AluSx SINE Alu -5 307 7 2981 216 28 43 chr12 126927428 126928293 -17354196 - L1P LINE L1 -1159 4987 4136 2262 94 3 0 chr12 126929021 126929320 -17353169 - AluSq SINE Alu -13 300 1 255 352 70 30 chr12 126929355 126929554 -17352935 + MIR SINE MIR 35 241 -21 234 266 137 32 chr12 126929809 126929933 -17352556 - MIR SINE MIR -44 218 82 217 294 0 0 chr12 126929981 126930032 -17352457 - MER5A DNA MER1_type 0 189 139 522 171 0 0 chr12 126930558 126930640 -17351849 + L2 LINE L2 3232 3313 0 2171 88 0 0 chr12 126930863 126931146 -17351343 + AluSq SINE Alu 5 287 -26 778 209 62 139 chr12 126931334 126931707 -17350782 + MLT1J LTR MaLR 113 456 -55 778 214 105 14 chr12 126931918 126931945 -17350544 + L1MC4a LINE L1 5611 5634 -2174 2131 118 0 3 chr12 126931945 126932250 -17350239 - AluSc SINE Alu -5 304 1 778 214 105 14 chr12 126932250 126932432 -17350057 + L1MC4a LINE L1 5634 5839 -1969 2056 103 7 3 chr12 126932637 126932937 -17349552 - AluSq SINE Alu -12 301 1 1960 121 3 0 chr12 126932939 126933229 -17349260 - AluY SINE Alu -19 292 2 1807 130 0 0 chr12 126933257 126933510 -17348979 - AluSx SINE Alu -55 257 5 386 299 48 21 chr12 126933663 126933850 -17348639 - L2 LINE L2 -73 3240 3049 215 324 57 9 chr12 126934544 126934649 -17347840 - MIR SINE MIR -110 152 43 2828 33 24 0 chr12 126934975 126935308 -17347181 - LTR5 LTR ERVK -628 341 1 250 77 6 2 chr12 126935308 126935481 -17347008 + AluY SINE Alu 92 298 -1 2315 84 3 0 chr12 126935514 126935824 -17346665 - AluSq SINE Alu -2 311 1 729 228 40 0 chr12 126936813 126936962 -17345527 + MIR SINE MIR 106 260 -2 2006 117 0 27 chr12 126936962 126937120 -17345369 - AluSx SINE Alu -21 291 143 2278 71 10 3 chr12 126937120 126937414 -17345075 - AluSx SINE Alu -12 300 5 2006 117 0 27 chr12 126937414 126937554 -17344935 - AluSx SINE Alu -169 143 1 1953 178 0 6 chr12 126937575 126937896 -17344593 + MLT1A1 LTR MaLR 1 319 -46 957 211 0 0 chr12 126937914 126938089 -17344400 + AluJo SINE Alu 121 295 -17 2087 117 0 9 chr12 126938163 126938479 -17344010 + AluSq SINE Alu 1 313 0 1468 175 64 7 chr12 126938621 126938901 -17343588 - AluJo SINE Alu -15 297 2 2064 113 0 7 chr12 126938995 126939295 -17343194 - AluSx SINE Alu -6 306 9 835 161 37 0 chr12 126939304 126939466 -17343023 - L1MB7 LINE L1 -8 6176 6009 1184 169 97 30 chr12 126939468 126939786 -17342703 + MSTD LTR MaLR 1 396 0 1236 178 22 4 chr12 126939786 126940011 -17342478 - L1MB7 LINE L1 -173 6011 5783 2249 161 40 12 chr12 126940011 126940154 -17342335 - MER50 LTR ERV1 -23 711 574 2255 71 24 0 chr12 126940154 126940448 -17342041 + AluSp SINE Alu 1 301 -12 2249 161 40 12 chr12 126940448 126940945 -17341544 - MER50 LTR ERV1 -160 574 1 239 143 0 0 chr12 126940945 126940987 -17341502 - L1MB7 LINE L1 -397 5787 5746 934 147 0 0 chr12 126941170 126941320 -17341169 + AluJb SINE Alu 154 303 -9 2017 142 0 0 chr12 126941342 126941653 -17340836 - AluSx SINE Alu -1 311 1 1126 99 0 0 chr12 126941869 126942021 -17340468 + MER41E LTR ERV1 8 159 -353 2186 101 0 0 chr12 126942023 126942321 -17340168 + AluSx SINE Alu 5 302 -10 1232 137 37 0 chr12 126942321 126942511 -17339978 + MER41E LTR ERV1 284 480 -32 1963 149 29 107 chr12 126942530 126942948 -17339541 + LTR8 LTR ERV1 246 622 -69 2335 96 0 0 chr12 126942948 126943260 -17339229 - AluSq SINE Alu -1 312 1 1963 149 29 107 chr12 126943260 126943325 -17339164 + LTR8 LTR ERV1 622 691 0 332 191 0 48 chr12 126943328 126943391 -17339098 - MIR SINE MIR -64 144 85 2503 37 0 3 chr12 126943450 126943749 -17338740 - AluY SINE Alu -12 299 2 2157 82 0 0 chr12 126943752 126944031 -17338458 - AluSx SINE Alu -16 296 18 1144 151 21 0 chr12 126944101 126944293 -17338196 + AluJo SINE Alu 87 282 -30 2364 134 14 62 chr12 126944293 126944659 -17337830 - MER84 LTR ERVI 0 507 164 2160 105 20 0 chr12 126944659 126944964 -17337525 + AluSx SINE Alu 1 311 -1 2364 134 14 62 chr12 126944964 126945029 -17337460 - MER84 LTR ERVI -343 164 97 24 0 0 0 chr12 126945029 126945053 -17337436 + AT_rich Low_complexity Low_complexity 1 24 0 2004 169 154 18 chr12 126945057 126945571 -17336918 - LTR29 LTR ERV1 -38 584 1 290 277 35 41 chr12 126945770 126945892 -17336597 - MIR3 SINE MIR -32 176 50 25 31 0 0 chr12 126946296 126946328 -17336161 + AT_rich Low_complexity Low_complexity 1 32 0 519 100 100 0 chr12 126946328 126946418 -17336071 + L1P4 LINE L1 5343 5441 -725 683 170 0 0 chr12 126946424 126946536 -17335953 + AluJo/FLAM SINE Alu 13 124 -188 1601 158 8 0 chr12 126946536 126946802 -17335687 - AluJb SINE Alu -43 269 2 230 156 0 0 chr12 126946827 126946872 -17335617 - LTR66 LTR ERVL -172 438 394 2171 101 3 0 chr12 126946887 126947194 -17335295 - AluSp SINE Alu -5 308 1 304 169 17 17 chr12 126947196 126947255 -17335234 - AluY SINE Alu -115 186 128 1920 146 7 0 chr12 126947258 126947559 -17334930 - AluSx SINE Alu -9 303 1 2170 74 0 53 chr12 126948150 126948473 -17334016 + AluY SINE Alu 1 306 -5 1213 188 85 38 chr12 126948655 126948854 -17333635 - AluJb SINE Alu -5 307 88 1863 121 11 0 chr12 126948854 126949136 -17333353 + AluSx SINE Alu 1 285 -27 1213 188 85 38 chr12 126949136 126949229 -17333260 - AluJb SINE Alu -224 88 1 2508 61 0 3 chr12 126949583 126949895 -17332594 + AluY SINE Alu 1 311 0 315 364 58 61 chr12 126950056 126950317 -17332172 + L3 LINE CR1 1281 1540 -37 1995 115 11 0 chr12 126950341 126950645 -17331844 + AluSx SINE Alu 1 307 0 784 149 16 0 chr12 126950942 126951063 -17331426 - FRAM SINE Alu -34 142 20 232 208 83 83 chr12 126951135 126951207 -17331282 + L2 LINE L2 3007 3078 -194 1434 165 16 63 chr12 126951278 126951581 -17330908 - AluJo SINE Alu -23 289 1 243 217 0 0 chr12 126951602 126951662 -17330827 + CT-rich Low_complexity Low_complexity 3 62 0 1073 199 0 10 chr12 126951669 126951875 -17330614 - AluJo SINE Alu -108 204 1 478 313 62 0 chr12 126951875 126952019 -17330470 + L2 LINE L2 3161 3313 0 1098 229 38 0 chr12 126952649 126952859 -17329630 + MER58A DNA MER1_type 1 218 -6 2087 110 0 31 chr12 126952881 126953200 -17329289 - AluSx SINE Alu -2 310 2 2238 45 42 7 chr12 126953302 126953591 -17328898 - AluY SINE Alu -12 299 1 2226 81 0 0 chr12 126953592 126953877 -17328612 - AluY SINE Alu -25 286 2 1779 151 14 0 chr12 126953893 126954172 -17328317 - AluSx SINE Alu -29 283 1 576 307 87 21 chr12 126954228 126954469 -17328020 - MIR SINE MIR 0 262 6 2173 109 7 0 chr12 126955198 126955501 -17326988 + AluSq SINE Alu 1 305 -8 669 121 153 25 chr12 126955992 126956149 -17326340 - L1MA9 LINE L1 -35 6277 6101 2106 100 3 13 chr12 126956195 126956326 -17326163 + AluSx SINE Alu 6 137 -175 2429 41 0 3 chr12 126956326 126956617 -17325872 + AluY SINE Alu 1 290 -21 2106 100 3 13 chr12 126956617 126956784 -17325705 + AluSx SINE Alu 137 301 -11 308 320 48 10 chr12 126956793 126956896 -17325593 - MIR SINE MIR -155 107 1 318 167 56 24 chr12 126957475 126957601 -17324888 + (TATAA)n Simple_repeat Simple_repeat 1 130 0 545 295 52 0 chr12 126957752 126957925 -17324564 - MIR SINE MIR -4 258 77 241 321 12 60 chr12 126958022 126958106 -17324383 - MIR SINE MIR -179 83 4 2038 109 24 3 chr12 126958386 126958679 -17323810 - AluSq SINE Alu -14 299 1 2160 145 16 25 chr12 126958680 126959045 -17323444 + MER84 LTR ERVI 146 507 0 1144 151 21 0 chr12 126959045 126959237 -17323252 - AluJo SINE Alu -30 282 87 2157 82 0 0 chr12 126959307 126959586 -17322903 + AluSx SINE Alu 18 296 -16 2503 37 0 3 chr12 126959589 126959888 -17322601 + AluY SINE Alu 2 299 -12 332 191 0 48 chr12 126959947 126960010 -17322479 + MIR SINE MIR 85 144 -64 481 123 0 0 chr12 126960013 126960078 -17322411 - LTR8 LTR ERV1 0 691 627 2212 88 3 0 chr12 126960078 126960375 -17322114 + AluSx SINE Alu 1 298 -14 2172 97 0 7 chr12 126960379 126960687 -17321802 + AluSg SINE Alu 5 310 0 1108 146 0 0 chr12 126960687 126960852 -17321637 + AluSg/x SINE Alu 130 294 -16 5972 99 39 2 chr12 126960852 126961332 -17321157 + L1PA15 LINE L1 4980 5441 -724 2002 109 0 36 chr12 126961332 126961634 -17320855 + AluSx SINE Alu 11 301 -11 5972 99 39 2 chr12 126961634 126962299 -17320190 + L1PA15 LINE L1 5441 6162 -3 976 150 63 63 chr12 126962501 126962582 -17319907 - AluJb SINE Alu -105 207 127 1874 148 7 0 chr12 126962582 126962872 -17319617 - AluSg SINE Alu -18 292 1 976 150 63 63 chr12 126962872 126962997 -17319492 - AluJb SINE Alu -184 128 1 1928 111 17 17 chr12 126963068 126963366 -17319123 + AluSx SINE Alu 1 298 -14 237 136 0 0 chr12 126963372 126963416 -17319073 + L1MB2 LINE L1 6126 6169 -2 2229 98 0 0 chr12 126963425 126963720 -17318769 + AluSg SINE Alu 1 295 -15 856 163 35 41 chr12 126963839 126964011 -17318478 + AluJo SINE Alu 1 171 -141 1220 138 0 0 chr12 126964030 126964219 -17318270 + AluSg/x SINE Alu 121 309 -3 783 179 25 37 chr12 126964223 126964385 -17318104 + AluJo SINE Alu 117 276 -36 1619 194 10 0 chr12 126964537 126964836 -17317653 - AluJb SINE Alu -10 302 1 412 161 21 43 chr12 126964856 126964949 -17317540 - FLAM_C SINE Alu -16 127 37 240 300 88 0 chr12 126964952 126965032 -17317457 - MIR SINE MIR -68 194 108 482 129 109 30 chr12 126965384 126965485 -17317004 - MER4B LTR ERV1 -289 321 213 1385 92 9 57 chr12 126965486 126965656 -17316833 - AluSg/x SINE Alu -6 306 129 391 0 36 18 chr12 126965656 126965711 -17316778 + (TTTTA)n Simple_repeat Simple_repeat 2 57 0 2175 45 0 24 chr12 126965711 126966000 -17316489 - AluY SINE Alu -29 282 1 1385 92 9 57 chr12 126966000 126966055 -17316434 - AluSg/x SINE Alu -181 131 91 303 125 36 0 chr12 126966055 126966111 -17316378 + Alu SINE Alu 242 299 -1 259 262 56 0 chr12 126966185 126966292 -17316197 + L1ME4a LINE L1 5675 5787 -2021 1897 142 0 3 chr12 126966317 126966626 -17315863 - AluJb SINE Alu -4 308 1 229 262 119 8 chr12 126966729 126966855 -17315634 + L1ME4a LINE L1 5976 6115 -6 2362 70 0 3 chr12 126966944 126967243 -17315246 + AluSg SINE Alu 1 298 -12 393 22 0 0 chr12 126967572 126967618 -17314871 + (TG)n Simple_repeat Simple_repeat 1 46 0 1371 160 7 91 chr12 126967621 126967712 -17314777 - AluJo SINE Alu -31 281 184 2208 53 56 0 chr12 126967712 126967996 -17314493 + AluY SINE Alu 1 300 -11 1371 160 7 91 chr12 126967996 126968211 -17314278 - AluJo SINE Alu -128 184 1 1014 166 24 24 chr12 126969832 126970037 -17312452 + AluJo SINE Alu 86 290 -22 1854 134 7 0 chr12 126970168 126970460 -17312029 - AluSx SINE Alu -18 294 1 1245 210 66 42 chr12 126970777 126970862 -17311627 + MER58B DNA MER1_type 1 82 -2338 2084 104 23 7 chr12 126970862 126971169 -17311320 - AluSx SINE Alu 0 312 1 1245 210 66 42 chr12 126971169 126971416 -17311073 + MER58B DNA MER1_type 82 341 0 1651 186 3 0 chr12 126971506 126971797 -17310692 + AluSx SINE Alu 1 292 -20 710 193 82 47 chr12 126971799 126972032 -17310457 - L1ME2 LINE L1 -249 5915 5675 787 158 110 6 chr12 126972057 126972221 -17310268 + L1MB3 LINE L1 5801 5981 -202 2135 108 3 13 chr12 126972231 126972545 -17309944 - AluSx SINE Alu 0 312 2 1653 137 0 8 chr12 126972573 126972828 -17309661 - AluSx SINE Alu -55 257 5 571 213 22 71 chr12 126972831 126972883 -17309606 - L1MB2 LINE L1 -40 6131 6078 1754 154 0 37 chr12 126972883 126973207 -17309282 - AluJb SINE Alu 0 312 1 571 213 22 71 chr12 126973207 126973337 -17309152 - L1MB2 LINE L1 -93 6078 5958 1775 136 4 0 chr12 126973931 126974210 -17308279 - AluSx SINE Alu -32 280 1 1245 210 66 42 chr12 126974527 126974612 -17307877 + MER58B DNA MER1_type 1 82 -2338 2084 104 23 7 chr12 126974612 126974919 -17307570 - AluSx SINE Alu 0 312 1 1245 210 66 42 chr12 126974919 126975166 -17307323 + MER58B DNA MER1_type 82 341 0 2264 84 3 0 chr12 126975256 126975555 -17306934 + AluSg SINE Alu 1 300 -10 2280 72 3 0 chr12 126976770 126977061 -17305428 - AluY SINE Alu -18 293 2 458 253 50 30 chr12 126977135 126977337 -17305152 - L1ME3 LINE L1 -12 6150 5945 2118 101 3 3 chr12 126977342 126977639 -17304850 - AluSg SINE Alu -13 297 1 1372 210 161 19 chr12 126977837 126978304 -17304185 - LTR29 LTR ERV1 -89 533 1 290 277 35 41 chr12 126978503 126978625 -17303864 - MIR3 SINE MIR -32 176 50 25 31 0 0 chr12 126979029 126979061 -17303428 + AT_rich Low_complexity Low_complexity 1 32 0 519 100 100 0 chr12 126979061 126979151 -17303338 + L1P4 LINE L1 5343 5441 -725 683 170 0 0 chr12 126979157 126979269 -17303220 + AluJo/FLAM SINE Alu 13 124 -188 2057 79 4 0 chr12 126979269 126979535 -17302954 - AluSg SINE Alu -43 267 1 1729 152 7 0 chr12 126979622 126979960 -17302529 - AluSx SINE Alu 0 340 1 1408 165 62 4 chr12 126980043 126980316 -17302173 - AluJb SINE Alu -23 289 1 331 109 18 0 chr12 126980428 126980483 -17302006 + Alu SINE Alu 1 56 -244 1662 154 3 35 chr12 126980645 126980956 -17301533 - AluJb SINE Alu -11 301 1 1757 155 44 94 chr12 126980958 126981421 -17301068 - L1MB2 LINE L1 -82 6089 5656 1899 100 68 4 chr12 126981422 126981540 -17300949 + AluSx SINE Alu 1 110 -202 192 40 0 0 chr12 126981540 126981565 -17300924 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1899 100 68 4 chr12 126981565 126981727 -17300762 + AluSx SINE Alu 110 299 -13 325 26 0 0 chr12 126982175 126982214 -17300275 - MADE1 DNA Mariner 0 80 42 189 0 0 0 chr12 126982974 126982995 -17299494 + (A)n Simple_repeat Simple_repeat 1 21 0 1987 152 0 13 chr12 126984044 126984359 -17298130 - AluSx SINE Alu -1 311 1 1823 253 51 24 chr12 126984366 126984400 -17298089 + L1M4 LINE L1 4324 4356 -1790 2104 117 0 3 chr12 126984400 126984700 -17297789 + AluSg1 SINE Alu 1 299 -10 1823 253 51 24 chr12 126984700 126984743 -17297746 + L1M4 LINE L1 4356 4396 -1750 2335 87 0 0 chr12 126984743 126985042 -17297447 + AluSx SINE Alu 1 299 -13 1823 253 51 24 chr12 126985042 126985776 -17296713 + L1M4 LINE L1 4396 5231 -915 23 33 0 0 chr12 126986012 126986042 -17296447 + AT_rich Low_complexity Low_complexity 1 30 0 976 216 0 39 chr12 126986055 126986314 -17296175 + AluJo SINE Alu 56 304 -8 979 96 0 15 chr12 126986584 126986719 -17295770 - FLAM_C SINE Alu 0 133 1 494 302 189 39 chr12 126987042 126987694 -17294795 - L2 LINE L2 0 3313 2566 199 301 55 68 chr12 126988000 126988146 -17294343 - L2 LINE L2 -11 3302 3159 2366 61 3 0 chr12 126988284 126988578 -17293911 - AluY SINE Alu -16 295 1 329 250 9 19 chr12 126988704 126988812 -17293677 + L1ME3A LINE L1 5873 5979 -191 402 168 32 96 chr12 126988849 126988974 -17293515 + L1ME3A LINE L1 5962 6078 -92 2215 89 0 22 chr12 126989170 126989484 -17293005 - AluY SINE Alu -4 307 1 2013 98 4 4 chr12 126989913 126990188 -17292301 + AluSx SINE Alu 1 275 -37 213 65 0 0 chr12 126990194 126990225 -17292264 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2071 104 10 19 chr12 126990230 126990539 -17291950 + AluSg SINE Alu 1 306 -4 353 75 19 0 chr12 126990751 126990804 -17291685 + (TCCA)n Simple_repeat Simple_repeat 4 57 0 536 343 72 32 chr12 126990804 126991177 -17291312 - L2 LINE L2 -18 3295 2908 2341 66 0 16 chr12 126991216 126991520 -17290969 - AluY SINE Alu -12 299 1 634 126 198 0 chr12 126991739 126991850 -17290639 - AluJo SINE Alu -178 134 2 4106 166 52 39 chr12 126992205 126992259 -17290230 + L1MB8 LINE L1 5279 5331 -847 2393 60 0 3 chr12 126992259 126992560 -17289929 + AluSp SINE Alu 1 300 -13 4106 166 52 39 chr12 126992560 126993394 -17289095 + L1MB8 LINE L1 5331 6178 0 623 315 43 20 chr12 126993420 126993674 -17288815 - MIR SINE MIR 0 262 3 363 289 100 42 chr12 126994284 126994474 -17288015 - L2 LINE L2 0 3313 3113 214 333 24 41 chr12 126994586 126994709 -17287780 - L2 LINE L2 -456 2858 2738 2073 98 7 17 chr12 126994890 126995185 -17287304 + AluSc SINE Alu 1 292 -17 2530 242 18 32 chr12 126995623 126995722 -17286767 + L1MEc LINE L1 19 118 -6278 1558 185 24 3 chr12 126995722 126996020 -17286469 + AluJb SINE Alu 1 304 -8 2530 242 18 32 chr12 126996020 126996578 -17285911 + L1MEc LINE L1 118 667 -5729 866 175 0 0 chr12 126996578 126996732 -17285757 - AluJb SINE Alu -3 309 156 2437 235 15 70 chr12 126996752 126997153 -17285336 + L1MEc LINE L1 661 990 -5406 2056 122 0 0 chr12 126997153 126997439 -17285050 - AluSx SINE Alu -26 286 1 2437 235 15 70 chr12 126997439 126997915 -17284574 + L1MEc LINE L1 990 1490 -4906 328 196 0 0 chr12 126997916 126997972 -17284517 + L1M4 LINE L1 4071 4126 -2020 670 205 0 16 chr12 126997973 126998095 -17284394 + FLAM_C SINE Alu 2 121 -22 260 245 112 66 chr12 126998116 126998317 -17284172 + L1M4 LINE L1 4114 4304 -1842 1832 152 0 23 chr12 126998317 126998619 -17283870 - AluSx SINE Alu -17 295 1 260 245 112 66 chr12 126998619 126998660 -17283829 + L1M4 LINE L1 4304 4342 -1804 2095 117 0 3 chr12 126998660 126998959 -17283530 + AluSg1 SINE Alu 1 298 -11 260 245 112 66 chr12 126998959 126999001 -17283488 + L1M4 LINE L1 4342 4412 -1734 2142 119 0 0 chr12 126999002 126999296 -17283193 + AluSx SINE Alu 1 294 -18 406 318 74 7 chr12 126999430 126999523 -17282966 + MIR3 SINE MIR 45 153 -55 1668 145 0 84 chr12 126999523 126999716 -17282773 - AluSx SINE Alu -8 304 149 1993 129 0 7 chr12 126999716 127000026 -17282463 - AluSx SINE Alu -4 308 1 1668 145 0 84 chr12 127000026 127000164 -17282325 - AluSx SINE Alu -163 149 1 406 318 74 7 chr12 127000164 127000218 -17282271 + MIR3 SINE MIR 153 202 -6 1924 118 38 3 chr12 127000639 127000927 -17281562 - AluSx SINE Alu -14 298 1 886 208 29 6 chr12 127001183 127001356 -17281133 + L1M4c LINE L1 330 506 -5878 870 154 24 0 chr12 127001357 127001526 -17280963 - AluSq SINE Alu -3 310 138 2071 74 13 26 chr12 127001532 127001841 -17280648 - AluY SINE Alu -6 305 1 678 126 198 0 chr12 127002060 127002171 -17280318 - AluJo SINE Alu -178 134 2 4215 164 49 44 chr12 127002507 127002580 -17279909 + L1MB8 LINE L1 5265 5336 -842 2513 57 0 3 chr12 127002580 127002881 -17279608 + AluSp SINE Alu 1 300 -13 4215 164 49 44 chr12 127002881 127003715 -17278774 + L1MB8 LINE L1 5336 6178 0 598 315 43 20 chr12 127003741 127003995 -17278494 - MIR SINE MIR 0 262 3 359 297 84 26 chr12 127004605 127004760 -17277729 - L2 LINE L2 0 3313 3150 23 0 0 0 chr12 127004787 127004810 -17277679 + AT_rich Low_complexity Low_complexity 1 23 0 215 317 32 49 chr12 127004907 127005030 -17277459 - L2 LINE L2 -456 2858 2738 2203 95 7 17 chr12 127005211 127005506 -17276983 + AluSc SINE Alu 1 292 -17 2527 238 18 34 chr12 127005947 127006043 -17276446 + L1MEc LINE L1 23 119 -6277 1643 185 24 3 chr12 127006043 127006341 -17276148 + AluJb SINE Alu 1 304 -8 2527 238 18 34 chr12 127006341 127006899 -17275590 + L1MEc LINE L1 119 667 -5729 913 175 0 0 chr12 127006899 127007053 -17275436 - AluJb SINE Alu -3 309 156 2521 235 15 70 chr12 127007073 127007474 -17275015 + L1MEc LINE L1 661 990 -5406 2176 119 0 0 chr12 127007474 127007760 -17274729 - AluSx SINE Alu -26 286 1 2521 235 15 70 chr12 127007760 127008236 -17274253 + L1MEc LINE L1 990 1490 -4906 326 196 0 0 chr12 127008237 127008293 -17274196 + L1M4 LINE L1 4071 4126 -2020 720 205 0 16 chr12 127008294 127008416 -17274073 + FLAM_C SINE Alu 2 121 -22 314 245 112 66 chr12 127008437 127008638 -17273851 + L1M4 LINE L1 4114 4304 -1842 1872 156 3 23 chr12 127008638 127008939 -17273550 - AluSx SINE Alu -17 295 1 314 245 112 66 chr12 127008939 127008980 -17273509 + L1M4 LINE L1 4304 4342 -1804 2200 117 0 3 chr12 127008980 127009280 -17273209 + AluSg1 SINE Alu 1 299 -10 314 245 112 66 chr12 127009280 127009322 -17273167 + L1M4 LINE L1 4342 4412 -1734 * 754 311 81 29 chr12 127009307 127009323 -17273166 - L1ME4a LINE L1 -74 6047 6033 2425 90 7 0 chr12 127009323 127009633 -17272856 + AluSx SINE Alu 1 312 0 754 311 81 29 chr12 127009633 127010060 -17272429 - L1ME4a LINE L1 -88 6033 5581 2282 107 7 0 chr12 127010445 127010754 -17271735 + AluSp SINE Alu 1 311 -2 193 0 61 30 chr12 127010832 127010865 -17271624 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 1206 136 0 0 chr12 127010872 127011049 -17271440 - AluSg/x SINE Alu -4 306 130 1996 115 69 0 chr12 127011099 127011387 -17271102 - AluSx SINE Alu -4 308 1 251 296 0 0 chr12 127012058 127012129 -17270360 + L2 LINE L2 2676 2746 -568 186 43 0 0 chr12 127012157 127012180 -17270309 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2507 55 0 13 chr12 127012387 127012694 -17269795 - AluY SINE Alu -8 303 1 2594 165 40 62 chr12 127012859 127013442 -17269047 - L1MB8 LINE L1 -6 6172 5603 1227 108 6 0 chr12 127013872 127014038 -17268451 + AluSg/x SINE Alu 145 311 -1 25 0 0 0 chr12 127014066 127014091 -17268398 + AT_rich Low_complexity Low_complexity 1 25 0 1806 164 3 20 chr12 127014406 127014705 -17267784 + AluJb SINE Alu 1 294 -18 347 276 125 7 chr12 127014875 127014939 -17267550 - MER69A DNA AcHobo -2356 170 115 2333 94 3 3 chr12 127014939 127015248 -17267241 + AluY SINE Alu 1 309 -2 2073 134 3 7 chr12 127015250 127015549 -17266940 + AluSx SINE Alu 1 298 -14 347 276 125 7 chr12 127015549 127015633 -17266856 - MER69A DNA AcHobo -2411 115 1 195 121 0 30 chr12 127016042 127016075 -17266414 - MIR3 SINE MIR -23 185 154 1648 133 89 15 chr12 127016355 127016625 -17265864 - AluSg SINE Alu -19 291 2 1785 148 17 28 chr12 127016860 127017151 -17265338 - AluJo SINE Alu -24 288 1 1357 255 226 23 chr12 127017364 127018117 -17264372 - L2 LINE L2 -2 3311 2415 2307 78 0 3 chr12 127018137 127018432 -17264057 + AluY SINE Alu 1 294 -17 2225 108 0 7 chr12 127018440 127018736 -17263753 + AluSx SINE Alu 1 294 -18 2283 107 0 0 chr12 127019183 127019474 -17263015 - AluSg SINE Alu -17 293 3 188 315 0 19 chr12 127019716 127019770 -17262719 + MER5A DNA MER1_type 137 189 0 6376 97 51 19 chr12 127019858 127020524 -17261965 - L1PA15 LINE L1 -3 6162 5443 2105 109 0 36 chr12 127020524 127020826 -17261663 - AluSx SINE Alu -11 301 11 6376 97 51 19 chr12 127020826 127021306 -17261183 - L1PA15 LINE L1 -722 5443 4980 1171 146 0 0 chr12 127021306 127021471 -17261018 - AluSg/x SINE Alu -16 294 130 2284 97 0 7 chr12 127021471 127021779 -17260710 - AluSg SINE Alu 0 310 5 2129 110 7 0 chr12 127021783 127022073 -17260416 - AluSx SINE Alu -14 298 7 5198 182 18 7 chr12 127022079 127023056 -17259433 - L1PA15 LINE L1 -1159 4987 4000 2066 173 18 29 chr12 127023061 127023223 -17259266 - Charlie4a DNA MER1_type -1454 507 345 1646 119 116 18 chr12 127023223 127023500 -17258989 + AluSg1 SINE Alu 3 306 -3 2066 173 18 29 chr12 127023500 127023787 -17258702 - Charlie4a DNA MER1_type -1616 345 63 472 172 65 21 chr12 127024237 127024330 -17258159 - LTR67 LTR ERVL -3 554 458 248 197 121 45 chr12 127024500 127024566 -17257923 - LTR67 LTR ERVL -361 196 126 274 301 0 14 chr12 127024895 127024968 -17257521 - L2 LINE L2 0 3272 3201 2115 116 0 0 chr12 127025168 127025444 -17257045 + AluSc SINE Alu 1 276 -33 204 0 83 0 chr12 127025444 127025480 -17257009 + (CAA)n Simple_repeat Simple_repeat 1 39 0 369 195 195 35 chr12 127025766 127025940 -17256549 + L1ME4a LINE L1 5920 6121 0 200 345 60 32 chr12 127026237 127026486 -17256003 - L2 LINE L2 -908 2406 2151 1469 117 0 0 chr12 127026864 127027061 -17255428 - AluSx SINE Alu -115 197 1 2382 92 0 0 chr12 127027068 127027371 -17255118 - AluSq SINE Alu -10 303 1 1750 122 8 80 chr12 127027409 127027778 -17254711 - MER4A LTR ERV1 0 664 264 634 131 0 10 chr12 127027781 127027880 -17254609 - MER4A LTR ERV1 -566 98 1 6514 89 14 6 chr12 127028006 127028945 -17253544 + L1PB1 LINE L1 5205 6150 -1 1651 108 5 0 chr12 127028982 127029196 -17253293 - AluSg/x SINE Alu -22 288 74 476 339 52 10 chr12 127029229 127029421 -17253068 + MIR3 SINE MIR 2 201 -7 21 71 0 0 chr12 127029904 127029946 -17252543 + AT_rich Low_complexity Low_complexity 1 42 0 1204 217 79 62 chr12 127029975 127030343 -17252146 + MLT1A2 LTR MaLR 1 374 0 2033 148 3 3 chr12 127030352 127030662 -17251827 + AluSx SINE Alu 1 310 -2 2171 120 13 3 chr12 127030736 127031045 -17251444 + AluSx SINE Alu 1 312 0 2094 121 7 3 chr12 127031431 127031736 -17250753 + AluSq SINE Alu 1 306 -7 282 351 46 35 chr12 127031804 127031978 -17250511 + L2 LINE L2 2668 2843 -471 1277 120 6 6 chr12 127032318 127032501 -17249988 - AluSg/x SINE Alu -45 267 85 212 349 0 0 chr12 127032513 127032576 -17249913 + L2 LINE L2 3201 3263 -9 1724 92 141 8 chr12 127032613 127032875 -17249614 - AluSg1 SINE Alu -12 297 1 2128 120 0 13 chr12 127032878 127033179 -17249310 - AluSq SINE Alu -15 298 2 2105 102 25 0 chr12 127033542 127033826 -17248663 - AluY SINE Alu -20 291 1 414 279 235 5 chr12 127034180 127034384 -17248105 - MIR SINE MIR -7 255 5 2173 97 10 0 chr12 127035116 127035404 -17247085 + AluSg SINE Alu 1 291 -19 2415 81 0 3 chr12 127035455 127035753 -17246736 + AluSp SINE Alu 5 301 -12 1004 207 19 113 chr12 127035855 127036096 -17246393 - L1ME1 LINE L1 -4 6162 5965 1982 120 7 0 chr12 127036096 127036380 -17246109 - AluSx SINE Alu -2 310 25 1004 207 19 113 chr12 127036380 127036500 -17245989 - L1ME1 LINE L1 -201 5965 5835 705 297 104 7 chr12 127036508 127036777 -17245712 - L2 LINE L2 -798 2516 2222 2053 89 57 7 chr12 127036777 127037059 -17245430 - AluSc SINE Alu -13 296 1 189 289 22 0 chr12 127037074 127037119 -17245370 + MIR SINE MIR 101 146 -62 181 295 143 18 chr12 127037280 127037392 -17245097 + L2 LINE L2 3180 3305 -8 1834 123 0 8 chr12 127037903 127038154 -17244335 - AluSx SINE Alu -63 249 1 189 0 0 0 chr12 127038900 127038921 -17243568 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 594 271 218 14 chr12 127039152 127039432 -17243057 + L2 LINE L2 2976 3312 -1 1000 206 0 0 chr12 127039635 127039800 -17242689 - AluJo SINE Alu -147 165 1 574 230 189 0 chr12 127039959 127040107 -17242382 - MER5A DNA MER1_type 0 189 14 2131 119 7 0 chr12 127041234 127041528 -17240961 - AluSx SINE Alu -16 296 1 22 0 0 0 chr12 127041536 127041558 -17240931 + AT_rich Low_complexity Low_complexity 1 22 0 222 128 0 0 chr12 127042287 127042326 -17240163 + (CA)n Simple_repeat Simple_repeat 1 39 0 2320 108 0 16 chr12 127042477 127042793 -17239696 - AluSx SINE Alu -1 311 1 212 242 32 65 chr12 127043052 127043114 -17239375 + L2 LINE L2 3206 3265 -7 2294 100 7 0 chr12 127043281 127043581 -17238908 + AluSg SINE Alu 1 302 -8 477 290 41 0 chr12 127044069 127044214 -17238275 + MIR SINE MIR 2 152 -110 612 314 34 30 chr12 127044906 127045170 -17237319 + L2 LINE L2 3049 3313 0 2277 112 0 0 chr12 127045370 127045665 -17236824 - AluSq SINE Alu -18 295 1 523 258 79 57 chr12 127046680 127046909 -17235580 + MIR SINE MIR 15 248 -14 2074 137 27 0 chr12 127046917 127047217 -17235272 + AluSx SINE Alu 2 309 -3 2284 95 7 7 chr12 127047340 127047644 -17234845 + AluSx SINE Alu 1 304 -8 908 142 13 7 chr12 127047848 127048003 -17234486 - L1PA15 LINE L1 -1 6164 6009 895 122 0 50 chr12 127048055 127048194 -17234295 - FLAM_C SINE Alu 0 133 2 911 201 20 34 chr12 127048545 127048749 -17233740 + MER3 DNA MER1_type 9 209 0 23 33 0 0 chr12 127049682 127049712 -17232777 + AT_rich Low_complexity Low_complexity 1 30 0 3134 57 0 3 chr12 127049742 127050125 -17232364 + MER41A LTR ERV1 85 466 -88 2463 89 0 3 chr12 127050365 127050678 -17231811 + AluSx SINE Alu 1 312 0 2184 97 10 3 chr12 127050767 127051065 -17231424 + AluSx SINE Alu 3 302 -10 2363 96 0 0 chr12 127051231 127051534 -17230955 - AluSq SINE Alu -10 303 1 300 246 63 48 chr12 127051707 127051833 -17230656 + FLAM_C SINE Alu 4 131 -2 403 175 62 52 chr12 127052127 127052224 -17230265 + MSTC LTR MaLR 331 428 0 1246 178 22 4 chr12 127052224 127052449 -17230040 - L1MB7 LINE L1 -173 6011 5783 2207 161 40 12 chr12 127052449 127052592 -17229897 - MER50 LTR ERV1 -23 711 574 2369 71 24 0 chr12 127052592 127052886 -17229603 + AluSp SINE Alu 1 301 -12 2207 161 40 12 chr12 127052886 127053383 -17229106 - MER50 LTR ERV1 -160 574 1 243 143 0 0 chr12 127053383 127053425 -17229064 - L1MB7 LINE L1 -397 5787 5746 979 147 0 0 chr12 127053608 127053758 -17228731 + AluJb SINE Alu 154 303 -9 1894 143 16 3 chr12 127053780 127054087 -17228402 - AluSx SINE Alu -1 311 1 1116 99 0 0 chr12 127054303 127054455 -17228034 + MER41E LTR ERV1 8 159 -353 2291 101 0 0 chr12 127054457 127054755 -17227734 + AluSx SINE Alu 5 302 -10 1222 137 37 0 chr12 127054755 127054945 -17227544 + MER41E LTR ERV1 284 480 -32 1554 156 34 106 chr12 127054964 127055381 -17227108 + LTR8 LTR ERV1 246 632 -59 2150 139 0 3 chr12 127055382 127055692 -17226797 - AluSg SINE Alu -1 309 1 670 171 98 16 chr12 127055694 127055817 -17226672 - AluJo/FLAM SINE Alu -169 133 1 2015 114 17 17 chr12 127055888 127056185 -17226304 + AluSx SINE Alu 1 297 -15 248 136 0 0 chr12 127056191 127056235 -17226254 + L1MB2 LINE L1 6126 6169 -2 2276 108 0 9 chr12 127056244 127056560 -17225929 + AluSq SINE Alu 1 313 0 369 245 116 31 chr12 127056702 127056850 -17225639 - FRAM SINE Alu -6 160 24 2231 113 0 0 chr12 127057578 127057878 -17224611 - AluSx SINE Alu -12 300 1 186 288 100 50 chr12 127057888 127057968 -17224521 - MIR SINE MIR -67 141 58 233 300 88 0 chr12 127058297 127058377 -17224112 + MIR SINE MIR 108 194 -68 443 196 22 11 chr12 127058380 127058472 -17224017 + FLAM_C SINE Alu 37 129 -14 811 175 0 0 chr12 127058492 127058612 -17223877 + AluJb SINE Alu 1 120 -192 1506 144 0 99 chr12 127059524 127059715 -17222774 - AluSx SINE Alu -10 302 152 2105 129 0 7 chr12 127059715 127060025 -17222464 - AluSx SINE Alu -4 308 1 1506 144 0 99 chr12 127060025 127060145 -17222344 - AluSx SINE Alu -160 152 22 1654 153 17 36 chr12 127060536 127060837 -17221652 + AluJo SINE Alu 1 295 -17 505 164 32 201 chr12 127060837 127060895 -17221594 - MER5A DNA MER1_type -32 157 91 192 40 0 0 chr12 127060895 127060920 -17221569 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 505 164 32 201 chr12 127060920 127061050 -17221439 - MER5A DNA MER1_type -98 91 1 471 299 67 98 chr12 127061056 127061673 -17220816 + L2 LINE L2 2639 3222 -50 876 126 7 7 chr12 127061959 127062094 -17220395 - AluSp/q SINE Alu -9 304 170 56 48 0 0 chr12 127062268 127062352 -17220137 + GC_rich Low_complexity Low_complexity 1 84 0 522 213 33 7 chr12 127062408 127062558 -17219931 + AluSg/x SINE Alu 145 298 -12 2310 92 0 3 chr12 127062565 127062857 -17219632 + AluSg SINE Alu 1 291 -19 2232 84 7 0 chr12 127062859 127063145 -17219344 + AluSq SINE Alu 1 288 -25 25 0 0 0 chr12 127063145 127063170 -17219319 + AT_rich Low_complexity Low_complexity 1 25 0 244 280 21 11 chr12 127063178 127063263 -17219226 - L1M4 LINE L1 -1037 5109 5021 2098 94 27 20 chr12 127063263 127063561 -17218928 - AluSc SINE Alu -9 300 1 251 294 15 0 chr12 127063742 127063810 -17218679 + L2 LINE L2 2738 2806 -508 2099 122 10 0 chr12 127064447 127064735 -17217754 - AluSx SINE Alu -21 291 1 290 326 26 72 chr12 127064827 127065020 -17217469 - L3 LINE CR1 -113 1464 1281 2462 77 3 3 chr12 127065181 127065492 -17216997 - AluY SINE Alu 0 311 1 2384 199 50 43 chr12 127065504 127066054 -17216435 + L1MB4 LINE L1 4490 5046 -1100 2423 88 0 0 chr12 127066054 127066351 -17216138 - AluSc SINE Alu -12 297 1 2384 199 50 43 chr12 127066351 127066423 -17216066 + L1MB4 LINE L1 5046 5116 -1030 * 3616 150 21 5 chr12 127066408 127067014 -17215475 + L1MA8 LINE L1 5424 6039 -252 673 88 35 18 chr12 127067021 127067134 -17215355 + L1MA7 LINE L1 6176 6290 -1 4424 147 40 64 chr12 127067167 127068166 -17214323 + L1MB4 LINE L1 5098 6075 -105 822 178 0 8 chr12 127068205 127068334 -17214155 + FLAM_C SINE Alu 2 129 -4 327 237 122 22 chr12 127068727 127068928 -17213561 + L1MC4a LINE L1 5694 5755 -415 243 61 0 0 chr12 127069133 127069166 -17213323 + (CA)n Simple_repeat Simple_repeat 2 34 0 1856 145 28 0 chr12 127069166 127069448 -17213041 - AluJb SINE Alu -22 290 1 313 65 32 81 chr12 127069714 127069776 -17212713 - Alu SINE Alu 0 302 244 445 301 135 53 chr12 127069797 127069930 -17212559 + L1ME4a LINE L1 4371 4492 -1654 2348 88 3 7 chr12 127069930 127070236 -17212253 + AluSx SINE Alu 1 305 -7 445 301 135 53 chr12 127070236 127070368 -17212121 + L1ME4a LINE L1 4492 4612 -1534 1512 192 47 41 chr12 127070368 127070619 -17211870 - MER58B DNA MER1_type -2079 341 86 2234 80 55 0 chr12 127070619 127070908 -17211581 - AluSx SINE Alu -5 307 3 1512 192 47 41 chr12 127070908 127070995 -17211494 - MER58B DNA MER1_type -2334 86 1 445 301 135 53 chr12 127070995 127071441 -17211048 + L1ME4a LINE L1 4612 5141 -1005 300 278 0 56 chr12 127071569 127071677 -17210812 + L1ME4a LINE L1 5864 5965 -156 476 225 136 34 chr12 127071701 127072250 -17210239 + HAL1 LINE L1 1872 2498 -9 5720 127 40 31 chr12 127072254 127072633 -17209856 - L1MA3 LINE L1 -116 6189 5815 2758 26 0 6 chr12 127072633 127072945 -17209544 - AluY SINE Alu -1 310 1 5720 127 40 31 chr12 127072945 127073573 -17208916 - L1MA3 LINE L1 -490 5815 5163 2015 144 3 3 chr12 127073573 127073879 -17208610 - AluSx SINE Alu -6 306 1 5720 127 40 31 chr12 127073879 127074402 -17208087 - L1MA3 LINE L1 -1142 5163 4646 415 253 116 14 chr12 127075101 127075247 -17207242 - MIR SINE MIR -4 258 98 2245 81 24 24 chr12 127075957 127076253 -17206236 - AluSx SINE Alu -16 296 1 249 356 89 0 chr12 127076254 127076355 -17206134 - L2 LINE L2 -12 3260 3151 298 310 164 0 chr12 127076797 127076913 -17205576 - L2 LINE L2 0 3313 3179 26 0 0 0 chr12 127077380 127077406 -17205083 + AT_rich Low_complexity Low_complexity 1 26 0 227 270 0 26 chr12 127078560 127078675 -17203814 + A-rich Low_complexity Low_complexity 1 112 0 230 258 217 34 chr12 127079174 127079262 -17203227 + MIR SINE MIR 36 107 -155 2247 126 0 3 chr12 127079262 127079571 -17202918 + AluSx SINE Alu 1 308 -4 230 258 217 34 chr12 127079571 127079631 -17202858 + MIR SINE MIR 107 212 -50 25 31 0 0 chr12 127079641 127079673 -17202816 + AT_rich Low_complexity Low_complexity 1 32 0 2101 125 7 0 chr12 127079727 127080022 -17202467 - AluSx SINE Alu -13 299 3 3480 228 40 9 chr12 127080725 127080875 -17201614 + L1MD2 LINE L1 2324 2468 -3678 189 0 0 0 chr12 127080875 127080896 -17201593 + (CA)n Simple_repeat Simple_repeat 2 22 0 3480 228 40 9 chr12 127080896 127081650 -17200839 + L1MD2 LINE L1 2468 3256 -2890 2456 152 95 57 chr12 127081671 127081753 -17200736 + L1MB1 LINE L1 5587 5664 -504 2446 83 3 3 chr12 127081753 127082066 -17200423 + AluSp SINE Alu 1 313 0 2456 152 95 57 chr12 127082066 127082493 -17199996 + L1MB1 LINE L1 5664 6073 -95 2115 106 0 30 chr12 127082493 127082796 -17199693 + AluSg SINE Alu 1 294 -16 2117 115 3 20 chr12 127082796 127083101 -17199388 + AluSq SINE Alu 1 300 -13 2456 152 95 57 chr12 127083101 127083147 -17199342 + L1MB1 LINE L1 6072 6165 -3 852 249 81 10 chr12 127083150 127083447 -17199042 + L1MD2 LINE L1 3260 3577 -2569 1974 125 17 7 chr12 127083447 127083742 -17198747 + AluSx SINE Alu 1 298 -14 5264 196 38 35 chr12 127083743 127084687 -17197802 + L1MD2 LINE L1 4379 5318 -1041 1884 140 41 0 chr12 127084687 127084979 -17197510 + AluSx SINE Alu 1 304 -8 5264 196 38 35 chr12 127084979 127085979 -17196510 + L1MD2 LINE L1 5318 6349 -10 262 284 155 0 chr12 127086199 127086315 -17196174 + L2 LINE L2 3180 3313 0 2478 78 0 3 chr12 127086403 127086712 -17195777 + AluSg SINE Alu 1 308 -2 333 341 116 28 chr12 127086735 127087127 -17195362 - L2 LINE L2 -201 3071 2633 1130 30 0 0 chr12 127087174 127087307 -17195182 - AluSp/q SINE Alu -3 310 178 1990 53 114 4 chr12 127087471 127087733 -17194756 - AluSc SINE Alu -18 291 1 626 152 209 21 chr12 127088485 127088676 -17193813 - L1MC5 LINE L1 -36 7925 7699 871 215 5 0 chr12 127088679 127088865 -17193624 + AluJb SINE Alu 120 306 -6 1977 116 0 33 chr12 127088892 127089195 -17193294 - AluSx SINE Alu -14 298 6 272 208 40 48 chr12 127089215 127089340 -17193149 - L1MC5 LINE L1 -293 7668 7545 26 74 0 0 chr12 127089377 127089431 -17193058 + AT_rich Low_complexity Low_complexity 1 54 0 1870 162 3 10 chr12 127089638 127089947 -17192542 + AluJo SINE Alu 1 307 -5 1750 168 0 3 chr12 127090565 127090857 -17191632 + AluJb SINE Alu 15 305 -7 189 0 0 0 chr12 127090857 127090878 -17191611 + (GA)n Simple_repeat Simple_repeat 2 22 0 2234 119 3 0 chr12 127091045 127091348 -17191141 + AluSx SINE Alu 1 304 -8 2420 68 7 0 chr12 127091630 127091922 -17190567 + AluY SINE Alu 1 294 -17 1601 175 3 48 chr12 127094904 127095213 -17187276 - AluJb SINE Alu -17 295 1 2503 84 0 0 chr12 127096339 127096650 -17185839 - AluY SINE Alu 0 311 1 263 122 0 0 chr12 127096747 127096796 -17185693 - AluSq SINE Alu 0 303 255 1866 114 4 15 chr12 127096815 127097087 -17185402 - AluSq SINE Alu -38 275 7 2500 179 46 15 chr12 127097148 127097673 -17184816 + L1MB7 LINE L1 5625 6165 -19 273 324 75 52 chr12 127097729 127097902 -17184587 + MIR SINE MIR 5 181 -81 344 332 62 43 chr12 127098206 127098417 -17184072 + MIR SINE MIR 48 262 0 2512 89 0 3 chr12 127098479 127098793 -17183696 + AluSq SINE Alu 1 313 0 2180 128 0 7 chr12 127098799 127099103 -17183386 + AluSx SINE Alu 1 302 -10 253 274 32 0 chr12 127099278 127099340 -17183149 + L2 LINE L2 3209 3272 0 2402 71 3 3 chr12 127099764 127100075 -17182414 - AluY SINE Alu 0 311 1 2115 96 0 4 chr12 127100149 127100421 -17182068 + AluSg SINE Alu 23 293 -17 192 152 0 0 chr12 127100423 127100456 -17182033 + (TA)n Simple_repeat Simple_repeat 1 33 0 2131 123 3 3 chr12 127100622 127100914 -17181575 - AluSx SINE Alu -20 292 1 760 223 7 0 chr12 127101994 127102142 -17180347 - Tigger7 DNA MER2_type 0 2587 2439 * 1420 182 0 16 chr12 127102137 127102384 -17180105 - Tigger7 DNA MER2_type -2143 344 102 559 110 0 0 chr12 127102387 127102460 -17180029 + AluJ/FLAM SINE Alu 2 74 -238 2499 82 31 22 chr12 127102464 127102819 -17179670 + THE1B LTR MaLR 7 364 0 814 175 0 42 chr12 127102848 127102991 -17179498 + FRAM SINE Alu 32 168 -8 605 193 18 9 chr12 127102991 127103100 -17179389 - Tigger7 DNA MER2_type -2377 110 1 772 188 0 7 chr12 127103704 127103848 -17178641 - MIR SINE MIR -54 208 66 2154 140 0 0 chr12 127104196 127104504 -17177985 - AluSx SINE Alu -4 308 1 264 216 54 54 chr12 127104517 127104535 -17177954 + AluSg/x SINE Alu 118 135 -167 1836 147 3 33 chr12 127104535 127104834 -17177655 + AluJo SINE Alu 1 290 -22 2265 94 10 0 chr12 127107888 127108186 -17174303 + AluSx SINE Alu 1 301 -11 2545 59 0 3 chr12 127108190 127108493 -17173996 + AluY SINE Alu 1 302 -9 464 239 43 0 chr12 127108502 127108619 -17173870 - L2 LINE L2 -5 3308 3187 2440 92 0 3 chr12 127109357 127109663 -17172826 - AluSx SINE Alu -7 305 1 818 71 36 0 chr12 127109692 127109804 -17172685 - L1PA16 LINE L1 -9 6157 6042 701 140 14 44 chr12 127109808 127109956 -17172533 + L1MC/D LINE L1 5468 5604 -576 633 235 78 5 chr12 127110002 127110120 -17172369 - L2 LINE L2 0 3313 3205 1578 85 0 69 chr12 127110120 127110366 -17172123 + MER30 DNA MER1_type 2 230 0 633 235 78 5 chr12 127110366 127110451 -17172038 - L2 LINE L2 -108 3205 3095 2254 118 0 9 chr12 127110638 127110953 -17171536 + AluSx SINE Alu 1 312 0 25 0 0 0 chr12 127111228 127111253 -17171236 + AT_rich Low_complexity Low_complexity 1 25 0 261 0 0 0 chr12 127111632 127111661 -17170828 + (TG)n Simple_repeat Simple_repeat 1 29 0 207 133 0 0 chr12 127111663 127111708 -17170781 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 2104 83 13 60 chr12 127111744 127112067 -17170422 + AluSp SINE Alu 1 309 0 230 241 17 0 chr12 127112353 127112411 -17170078 + MIR SINE MIR 82 140 -68 1971 141 11 0 chr12 127112530 127112814 -17169675 + AluSx SINE Alu 1 287 -25 365 270 80 56 chr12 127112815 127113055 -17169434 - MIR SINE MIR -1 261 8 1619 127 7 85 chr12 127113136 127113443 -17169046 - AluJb SINE Alu -12 300 18 255 306 54 36 chr12 127113552 127113663 -17168826 - L2 LINE L2 0 3272 3160 2217 99 3 0 chr12 127113887 127114204 -17168285 + AluSx SINE Alu 1 318 0 1561 142 127 0 chr12 127114712 127114980 -17167509 + AluSx SINE Alu 1 302 -10 21 57 0 0 chr12 127115302 127115337 -17167152 + AT_rich Low_complexity Low_complexity 1 35 0 2042 112 3 0 chr12 127116114 127116400 -17166089 - AluY SINE Alu -24 287 1 28 0 0 0 chr12 127118894 127118922 -17163567 + GC_rich Low_complexity Low_complexity 1 28 0 1893 91 0 0 chr12 127120388 127120640 -17161849 + AluSx SINE Alu 60 311 -1 1462 149 0 107 chr12 127120695 127121004 -17161485 + AluJb SINE Alu 14 289 -23 21 36 0 0 chr12 127121544 127121572 -17160917 + AT_rich Low_complexity Low_complexity 1 28 0 2207 99 3 3 chr12 127121685 127121978 -17160511 - AluSc SINE Alu -16 293 1 28 0 0 0 chr12 127124469 127124497 -17157992 + GC_rich Low_complexity Low_complexity 1 28 0 1851 103 4 0 chr12 127125963 127126215 -17156274 + AluSx SINE Alu 60 312 0 303 268 127 83 chr12 127129083 127129311 -17153178 + MIR SINE MIR 15 252 -10 198 325 12 0 chr12 127129634 127129717 -17152772 + L2 LINE L2 3187 3270 -2 1123 145 70 0 chr12 127130100 127130286 -17152203 - MER2 DNA MER2_type 0 345 147 659 201 79 12 chr12 127130286 127130450 -17152039 - FAM SINE Alu 0 175 1 2358 94 3 3 chr12 127130474 127130781 -17151708 - AluSp SINE Alu -6 307 1 2138 106 0 30 chr12 127130781 127131084 -17151405 - AluSg SINE Alu -16 294 1 2270 156 105 38 chr12 127131089 127131511 -17150978 - L1MB1 LINE L1 -43 6125 5662 2466 83 3 3 chr12 127131511 127131824 -17150665 - AluSp SINE Alu 0 313 1 2270 156 105 38 chr12 127131824 127131906 -17150583 - L1MB1 LINE L1 -506 5662 5587 3411 228 40 9 chr12 127131927 127132681 -17149808 - L1M4 LINE L1 -2890 3256 2468 189 0 0 0 chr12 127132681 127132702 -17149787 + (TG)n Simple_repeat Simple_repeat 2 22 0 3411 228 40 9 chr12 127132702 127132852 -17149637 - L1M4 LINE L1 -3678 2468 2324 280 75 0 0 chr12 127133248 127133288 -17149201 + FLAM SINE Alu 86 125 -8 1176 159 67 108 chr12 127133293 127133440 -17149049 + AluSx SINE Alu 1 130 -172 381 18 36 18 chr12 127133440 127133495 -17148994 + (TAAAA)n Simple_repeat Simple_repeat 2 57 0 1176 159 67 108 chr12 127133495 127133662 -17148827 + AluSx SINE Alu 130 302 0 2033 164 61 25 chr12 127133662 127133865 -17148624 + MER4E LTR ERV1 365 559 -220 1744 117 80 0 chr12 127133865 127134175 -17148314 - AluJb SINE Alu 0 331 1 2033 164 61 25 chr12 127134175 127134365 -17148124 + MER4E LTR ERV1 559 774 -5 2067 132 0 3 chr12 127134607 127134902 -17147587 + AluSx SINE Alu 1 294 -18 339 317 76 7 chr12 127135039 127135130 -17147359 + MIR3 SINE MIR 48 154 -54 1784 145 0 84 chr12 127135130 127135323 -17147166 - AluSx SINE Alu -8 304 149 2119 129 0 7 chr12 127135323 127135633 -17146856 - AluSx SINE Alu -4 308 1 1784 145 0 84 chr12 127135633 127135771 -17146718 - AluSx SINE Alu -163 149 1 339 317 76 7 chr12 127135771 127135824 -17146665 + MIR3 SINE MIR 154 202 -6 2046 118 38 3 chr12 127136248 127136536 -17145953 - AluSx SINE Alu -14 298 1 2190 118 7 0 chr12 127136799 127137096 -17145393 - AluSq SINE Alu -14 299 1 2393 102 0 0 chr12 127137445 127137749 -17144740 + AluSx SINE Alu 6 309 -3 3037 192 39 94 chr12 127137880 127138824 -17143665 + L1MA7 LINE L1 5380 6271 -20 202 367 68 0 chr12 127139730 127139877 -17142612 - L2 LINE L2 -829 2485 2329 24 67 0 0 chr12 127140264 127140309 -17142180 + AT_rich Low_complexity Low_complexity 1 45 0 2382 95 20 0 chr12 127141833 127142139 -17140350 + AluSx SINE Alu 1 312 0 347 307 87 26 chr12 127142191 127142422 -17140067 - L2 LINE L2 -261 3052 2808 2250 61 0 0 chr12 127142577 127142840 -17139649 + AluY SINE Alu 45 307 -4 326 231 0 0 chr12 127143649 127143714 -17138775 + L2 LINE L2 3249 3313 0 524 118 0 24 chr12 127143976 127144061 -17138428 - AluS SINE Alu -5 304 222 2303 82 0 0 chr12 127144422 127144751 -17137738 - AluY SINE Alu 0 329 1 278 238 0 16 chr12 127144927 127144990 -17137499 + L2 LINE L2 3207 3268 -4 287 116 0 0 chr12 127145400 127145443 -17137046 - LTR54 LTR ERV1 -67 443 401 2047 110 0 11 chr12 127145474 127145756 -17136733 + AluSg SINE Alu 1 279 -31 213 39 0 0 chr12 127145886 127145912 -17136577 + (A)n Simple_repeat Simple_repeat 1 26 0 412 336 15 0 chr12 127146531 127146665 -17135824 - L2 LINE L2 -1 3271 3136 881 94 0 0 chr12 127146773 127146890 -17135599 + FLAM_C SINE Alu 2 118 -15 1973 127 23 10 chr12 127147172 127147471 -17135018 + AluSx SINE Alu 1 303 -9 592 176 30 103 chr12 127148954 127149119 -17133370 + MER3 DNA MER1_type 57 209 0 280 241 0 0 chr12 127149076 127149130 -17133359 - MER3 DNA MER1_type -119 90 37 * 482 78 0 13 chr12 127150942 127151019 -17131470 + (TG)n Simple_repeat Simple_repeat 1 76 0 222 62 0 0 chr12 127151570 127151602 -17130887 + (CA)n Simple_repeat Simple_repeat 1 32 0 27 0 0 0 chr12 127153106 127153133 -17129356 + AT_rich Low_complexity Low_complexity 1 27 0 201 74 0 0 chr12 127154739 127154766 -17127723 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 473 278 78 17 chr12 127155541 127155721 -17126768 - MIR SINE MIR -6 256 66 252 184 0 0 chr12 127157909 127157958 -17124531 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 1233 155 58 0 chr12 127157972 127158178 -17124311 + MER20 DNA MER1_type 2 219 0 195 338 25 12 chr12 127158188 127158268 -17124221 + MIR SINE MIR 20 100 -162 2242 114 13 0 chr12 127158323 127158629 -17123860 - AluSx SINE Alu -2 310 1 2389 88 3 0 chr12 127159387 127159683 -17122806 + AluSx SINE Alu 1 297 -15 2083 143 0 0 chr12 127159991 127160284 -17122205 + AluJb SINE Alu 1 293 -19 2430 93 0 0 chr12 127160284 127160584 -17121905 + AluSq SINE Alu 1 300 -13 2349 99 0 3 chr12 127160586 127160888 -17121601 + AluSq SINE Alu 1 301 -12 1369 32 0 0 chr12 127160921 127161076 -17121413 - L1PA5 LINE L1 0 6154 6000 212 154 0 0 chr12 127161300 127161339 -17121150 + CT-rich Low_complexity Low_complexity 1 39 0 2047 128 7 0 chr12 127161786 127162076 -17120413 + AluSx SINE Alu 13 304 -8 1654 153 17 36 chr12 127162280 127162581 -17119908 + AluJo SINE Alu 1 295 -17 554 163 26 200 chr12 127162581 127162639 -17119850 - MER5A DNA MER1_type -32 157 91 192 40 0 0 chr12 127162639 127162664 -17119825 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 554 163 26 200 chr12 127162664 127162795 -17119694 - MER5A DNA MER1_type -98 91 1 558 295 42 92 chr12 127162808 127163417 -17119072 + L2 LINE L2 2647 3222 -50 2218 122 3 3 chr12 127163703 127164007 -17118482 - AluSq SINE Alu -9 304 1 2136 111 7 16 chr12 127164390 127164697 -17117792 + AluSx SINE Alu 1 304 -8 684 351 105 18 chr12 127165787 127166454 -17116035 + L2 LINE L2 2542 3272 0 304 290 8 81 chr12 127166934 127167058 -17115431 + L2 LINE L2 3153 3267 -5 221 355 100 9 chr12 127167317 127167427 -17115062 - L2 LINE L2 -51 3221 3102 261 222 121 50 chr12 127167562 127167661 -17114828 - L2 LINE L2 -493 2821 2716 2296 98 3 0 chr12 127167695 127167991 -17114498 + AluSq SINE Alu 1 297 -16 1067 159 101 14 chr12 127168024 127168232 -17114257 + AluJb SINE Alu 3 228 -84 949 155 0 0 chr12 127168232 127168374 -17114115 + AluSg/x SINE Alu 164 305 -7 448 69 0 0 chr12 127168773 127168831 -17113658 - AluSg/x SINE Alu -83 229 172 2293 82 0 0 chr12 127168983 127169264 -17113225 - AluSx SINE Alu -22 290 10 2169 83 0 0 chr12 127169786 127170052 -17112437 - AluSq SINE Alu -18 295 30 1627 76 0 5 chr12 127170088 127170286 -17112203 + MER107 DNA MER1_type 1 197 0 207 100 0 0 chr12 127170562 127170592 -17111897 + (TG)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr12 127171555 127171577 -17110912 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 222 91 0 0 chr12 127171985 127172018 -17110471 + (T)n Simple_repeat Simple_repeat 1 33 0 284 186 0 14 chr12 127172289 127172359 -17110130 + (CA)n Simple_repeat Simple_repeat 2 70 0 612 293 25 42 chr12 127173708 127173947 -17108542 + MIR SINE MIR 28 262 0 1589 168 14 18 chr12 127174175 127174460 -17108029 + AluJo SINE Alu 11 294 -18 2057 116 11 3 chr12 127175497 127175782 -17106707 - AluSx SINE Alu -25 287 1 556 260 4 123 chr12 127175913 127175976 -17106513 + MIR SINE MIR 49 118 -144 1091 178 30 81 chr12 127175976 127176047 -17106442 + MER58A DNA MER1_type 1 74 -2346 1991 103 28 24 chr12 127176047 127176337 -17106152 - AluSx SINE Alu -21 291 1 1091 178 30 81 chr12 127176337 127176501 -17105988 + MER58A DNA MER1_type 74 224 0 556 260 4 123 chr12 127176501 127176664 -17105825 + MIR SINE MIR 118 248 -14 1887 140 35 7 chr12 127176782 127177068 -17105421 - AluJo SINE Alu -18 294 1 340 310 0 0 chr12 127177076 127177163 -17105326 - L2 LINE L2 -5 3267 3181 1241 321 100 40 chr12 127177179 127177775 -17104714 + L2 LINE L2 1790 2349 -965 2129 121 0 16 chr12 127177775 127178081 -17104408 - AluSx SINE Alu -11 301 1 1241 321 100 40 chr12 127178081 127178545 -17103944 + L2 LINE L2 2349 2914 -400 546 316 66 55 chr12 127178585 127178841 -17103648 + L2 LINE L2 3014 3272 0 504 343 170 26 chr12 127178857 127180152 -17102337 + L2 LINE L2 1657 3164 -108 2260 87 28 0 chr12 127180353 127180640 -17101849 - AluSg SINE Alu -15 295 1 235 282 90 0 chr12 127180701 127180779 -17101710 + L2 LINE L2 3182 3266 -6 300 256 207 16 chr12 127180779 127180900 -17101589 + L2 LINE L2 3124 3267 -5 473 217 26 35 chr12 127182382 127182497 -17099992 - MER117 DNA MER1_type -42 155 42 384 313 80 25 chr12 127182626 127182789 -17099700 - MER5A DNA MER1_type -1 188 17 190 224 176 96 chr12 127183236 127183361 -17099128 + MIR SINE MIR 46 180 -82 487 302 29 17 chr12 127183419 127183591 -17098898 - MER5B DNA MER1_type -1 177 4 236 29 0 29 chr12 127183807 127183841 -17098648 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 249 238 12 38 chr12 127184390 127184470 -17098019 + MLT1K LTR MaLR 511 588 0 829 140 0 0 chr12 127184501 127184615 -17097874 - FLAM_C SINE Alu -24 119 6 2068 112 0 11 chr12 127184761 127185047 -17097442 - AluSp SINE Alu -26 287 5 511 171 0 0 chr12 127185270 127185352 -17097137 - L2 LINE L2 0 3313 3232 191 314 0 0 chr12 127185878 127185929 -17096560 + MER5A DNA MER1_type 139 189 0 212 258 153 48 chr12 127185977 127186101 -17096388 + MIR SINE MIR 82 218 -44 252 348 56 34 chr12 127186377 127186555 -17095934 - MIR SINE MIR -46 216 35 2384 93 3 3 chr12 127186590 127186901 -17095588 + AluSx SINE Alu 1 311 -1 1990 103 4 4 chr12 127186990 127187262 -17095227 + AluSx SINE Alu 3 274 -38 555 168 58 77 chr12 127187367 127187522 -17094967 - L1MB1 LINE L1 -298 5870 5719 2391 99 3 3 chr12 127187547 127187860 -17094629 - AluSp SINE Alu 0 313 1 414 279 235 5 chr12 127188592 127188796 -17093693 + MIR SINE MIR 5 255 -7 2075 109 25 0 chr12 127189150 127189435 -17093054 + AluY SINE Alu 1 292 -19 2415 81 0 3 chr12 127189486 127189784 -17092705 + AluSp SINE Alu 5 301 -12 1009 211 19 111 chr12 127189886 127190126 -17092363 - L1ME1 LINE L1 -4 6162 5964 1961 123 7 0 chr12 127190126 127190410 -17092079 - AluSx SINE Alu -2 310 25 1009 211 19 111 chr12 127190410 127190530 -17091959 - L1ME1 LINE L1 -202 5964 5835 714 294 104 7 chr12 127190538 127190807 -17091682 - L2 LINE L2 -798 2516 2222 2004 89 60 7 chr12 127190807 127191088 -17091401 - AluSc SINE Alu -13 296 1 189 289 22 0 chr12 127191103 127191148 -17091341 + MIR SINE MIR 101 146 -62 181 295 143 18 chr12 127191309 127191421 -17091068 + L2 LINE L2 3180 3305 -8 1819 128 0 8 chr12 127191932 127192183 -17090306 - AluSx SINE Alu -63 249 1 189 0 0 0 chr12 127192929 127192950 -17089539 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 594 271 218 14 chr12 127193181 127193461 -17089028 + L2 LINE L2 2976 3312 -1 1000 206 0 0 chr12 127193664 127193829 -17088660 - AluJo SINE Alu -147 165 1 574 230 189 0 chr12 127193988 127194136 -17088353 - MER5A DNA MER1_type 0 189 14 2189 118 0 0 chr12 127195263 127195559 -17086930 - AluSx SINE Alu -16 296 1 22 0 0 0 chr12 127195567 127195589 -17086900 + AT_rich Low_complexity Low_complexity 1 22 0 222 128 0 0 chr12 127196319 127196358 -17086131 + (CA)n Simple_repeat Simple_repeat 1 39 0 2176 126 0 19 chr12 127196509 127196826 -17085663 - AluSx SINE Alu -1 311 1 212 242 32 65 chr12 127197085 127197147 -17085342 + L2 LINE L2 3206 3265 -7 2294 100 7 0 chr12 127197314 127197614 -17084875 + AluSg SINE Alu 1 302 -8 477 290 41 0 chr12 127198102 127198247 -17084242 + MIR SINE MIR 2 152 -110 612 314 34 30 chr12 127198939 127199203 -17083286 + L2 LINE L2 3049 3313 0 2252 115 0 0 chr12 127199403 127199698 -17082791 - AluSq SINE Alu -18 295 1 523 258 79 57 chr12 127200713 127200942 -17081547 + MIR SINE MIR 15 248 -14 2074 137 27 0 chr12 127200950 127201250 -17081239 + AluSx SINE Alu 2 309 -3 2284 95 7 7 chr12 127201373 127201677 -17080812 + AluSx SINE Alu 1 304 -8 908 142 13 7 chr12 127201881 127202036 -17080453 - L1PA15 LINE L1 -1 6164 6009 895 122 0 50 chr12 127202088 127202227 -17080262 - FLAM_C SINE Alu 0 133 2 911 201 20 34 chr12 127202578 127202782 -17079707 + MER3 DNA MER1_type 9 209 0 23 33 0 0 chr12 127203715 127203745 -17078744 + AT_rich Low_complexity Low_complexity 1 30 0 3134 57 0 3 chr12 127203775 127204158 -17078331 + MER41A LTR ERV1 85 466 -88 2335 97 3 0 chr12 127204398 127204708 -17077781 + AluSp SINE Alu 1 311 -2 967 247 111 36 chr12 127204708 127204926 -17077563 - HAL1b LINE L1 -74 1274 1074 1987 123 0 23 chr12 127204926 127205212 -17077277 + AluSx SINE Alu 1 281 -31 300 53 0 0 chr12 127205212 127205250 -17077239 + (CA)n Simple_repeat Simple_repeat 1 38 0 1987 123 0 23 chr12 127205250 127205265 -17077224 + AluSx SINE Alu 281 295 -17 967 247 111 36 chr12 127205265 127205580 -17076909 - HAL1b LINE L1 -274 1074 701 1322 233 159 23 chr12 127205809 127206053 -17076436 + L1MC4a LINE L1 5351 5561 -2247 2331 110 0 0 chr12 127206053 127206363 -17076126 - AluSg SINE Alu 0 310 1 1322 233 159 23 chr12 127206363 127206637 -17075852 + L1MC4a LINE L1 5561 5929 -1879 1844 157 20 0 chr12 127206759 127207052 -17075437 - AluSx SINE Alu -13 299 1 1702 184 40 3 chr12 127207056 127207355 -17075134 - AluJb SINE Alu -2 310 1 816 255 40 83 chr12 127207481 127207904 -17074585 - HAL1b LINE L1 -640 708 304 948 255 85 17 chr12 127207927 127208082 -17074407 + L2 LINE L2 2996 3139 -174 2186 114 0 0 chr12 127208082 127208390 -17074099 - AluSg SINE Alu -2 308 1 948 255 85 17 chr12 127208390 127208528 -17073961 + L2 LINE L2 3139 3309 -4 357 273 66 60 chr12 127208590 127208773 -17073716 - HAL1b LINE L1 -1112 236 53 1021 173 0 17 chr12 127208961 127209134 -17073355 - FRAM SINE Alu -7 169 1 293 227 62 86 chr12 127209422 127209550 -17072939 + HAL1b LINE L1 509 633 -715 1045 128 58 0 chr12 127211932 127212088 -17070401 - AluSg/x SINE Alu -14 296 132 2360 96 3 0 chr12 127212088 127212390 -17070099 - AluSp SINE Alu -2 311 9 650 237 52 94 chr12 127212463 127212771 -17069718 + MLT1J LTR MaLR 113 407 -104 2175 88 0 13 chr12 127213077 127213384 -17069105 - AluSx SINE Alu -9 303 1 1125 147 5 0 chr12 127213626 127213816 -17068673 - MER4E LTR ERV1 -5 761 571 975 151 7 0 chr12 127213816 127213968 -17068521 + AluJb SINE Alu 1 153 -159 34 84 0 0 chr12 127214088 127214171 -17068318 + AT_rich Low_complexity Low_complexity 1 83 0 537 301 52 0 chr12 127214322 127214495 -17067994 - MIR SINE MIR -4 258 77 240 321 12 60 chr12 127214592 127214676 -17067813 - MIR SINE MIR -179 83 4 2311 107 3 0 chr12 127214955 127215253 -17067236 - AluSp SINE Alu -14 299 1 235 287 184 23 chr12 127215357 127215531 -17066958 - L1ME LINE L1 -287 5875 5674 261 272 120 0 chr12 127215594 127215719 -17066770 - L1ME LINE L1 -695 5475 5336 699 190 0 8 chr12 127215725 127215846 -17066643 - AluJb SINE Alu -15 297 178 2207 115 3 13 chr12 127215889 127216201 -17066288 - AluSq SINE Alu -4 309 1 2184 103 0 3 chr12 127216451 127216742 -17065747 + AluY SINE Alu 1 290 -21 702 224 41 0 chr12 127216742 127216889 -17065600 - MIR SINE MIR -2 260 108 349 280 28 7 chr12 127216902 127217045 -17065444 - L1P LINE L1 -1119 5027 4882 1963 149 10 3 chr12 127217264 127217572 -17064917 - AluY SINE Alu -1 310 1 551 253 113 33 chr12 127217746 127218110 -17064379 + L1MC4a LINE L1 5739 6131 -1677 22 70 0 0 chr12 127218174 127218217 -17064272 + AT_rich Low_complexity Low_complexity 1 43 0 2201 136 3 0 chr12 127218445 127218754 -17063735 + AluSx SINE Alu 1 310 -2 21 95 0 0 chr12 127218755 127218818 -17063671 + AT_rich Low_complexity Low_complexity 1 63 0 753 232 93 10 chr12 127218829 127219023 -17063466 - MER63A DNA MER1_type 0 210 1 1938 176 3 0 chr12 127219427 127219728 -17062761 + AluSx SINE Alu 1 302 -10 4191 22 0 4 chr12 127219728 127220219 -17062270 + L1PA4 LINE L1 5665 6153 -2 282 29 0 0 chr12 127220222 127220257 -17062232 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 623 239 55 6 chr12 127220780 127220943 -17061546 + MIR SINE MIR 61 231 -31 2439 62 0 49 chr12 127221020 127221345 -17061144 - AluY SINE Alu 0 311 3 1005 149 25 0 chr12 127221349 127221510 -17060979 - AluSg/x SINE Alu -11 301 137 191 35 0 35 chr12 127222569 127222598 -17059891 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 21 36 0 0 chr12 127223623 127223651 -17058838 + AT_rich Low_complexity Low_complexity 1 28 0 355 311 38 35 chr12 127224279 127224427 -17058062 + MIR SINE MIR 17 164 -66 1020 165 0 6 chr12 127225439 127225603 -17056886 - FRAM SINE Alu -14 162 1 1550 132 0 5 chr12 127226688 127226908 -17055581 + AluSx SINE Alu 1 219 -93 2484 77 6 0 chr12 127226971 127227282 -17055207 - AluSp SINE Alu 0 313 1 987 101 0 0 chr12 127227318 127227447 -17055042 - AluSg SINE Alu -181 129 1 22 56 0 0 chr12 127227659 127227695 -17054794 + AT_rich Low_complexity Low_complexity 1 36 0 266 220 60 12 chr12 127227774 127227942 -17054547 + (TA)n Simple_repeat Simple_repeat 1 176 0 2158 67 85 0 chr12 127228632 127228914 -17053575 + AluSp SINE Alu 1 306 -7 2037 114 11 4 chr12 127229381 127229686 -17052803 + AluSq SINE Alu 1 307 0 237 243 0 0 chr12 127229686 127229756 -17052733 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 2031 111 19 32 chr12 127230467 127230782 -17051707 - AluSx SINE Alu -1 311 1 1566 164 8 8 chr12 127230904 127231166 -17051323 - AluJb SINE Alu -50 262 1 2590 61 0 0 chr12 127231320 127231631 -17050858 - AluY SINE Alu 0 311 1 183 42 0 0 chr12 127231848 127231872 -17050617 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1741 114 57 12 chr12 127231875 127232121 -17050368 - AluSx SINE Alu -37 275 19 2030 133 0 10 chr12 127232121 127232421 -17050068 - AluSx SINE Alu -14 298 1 21 0 0 0 chr12 127232423 127232444 -17050045 + AT_rich Low_complexity Low_complexity 1 21 0 337 280 100 40 chr12 127232650 127232800 -17049689 + L1MC4a LINE L1 5740 5898 -1910 433 190 216 0 chr12 127233863 127233979 -17048510 + MER3 DNA MER1_type 1 141 -68 243 188 0 0 chr12 127234274 127234322 -17048167 + (CATA)n Simple_repeat Simple_repeat 2 49 0 2085 149 0 0 chr12 127234322 127234618 -17047871 - AluSx SINE Alu -16 296 1 27 73 0 0 chr12 127234623 127234678 -17047811 + AT_rich Low_complexity Low_complexity 1 55 0 2258 120 0 0 chr12 127236083 127236383 -17046106 + AluSx SINE Alu 1 300 -12 1233 164 27 76 chr12 127236383 127236646 -17045843 + AluJb SINE Alu 40 289 -23 216 191 106 0 chr12 127236717 127236764 -17045725 - L2 LINE L2 -194 3078 3027 783 149 16 0 chr12 127236861 127236982 -17045507 + FRAM SINE Alu 20 142 -34 1529 77 10 5 chr12 127237279 127237499 -17044990 - AluSg/x SINE Alu 0 307 87 526 208 0 0 chr12 127237517 127237613 -17044876 - MER2 DNA MER2_type 0 345 250 1446 133 16 20 chr12 127237659 127237907 -17044582 - MER2 DNA MER2_type -96 249 3 2439 62 0 49 chr12 127238020 127238345 -17044144 - AluY SINE Alu 0 311 3 1014 143 25 0 chr12 127238349 127238510 -17043979 - AluSg/x SINE Alu -11 301 137 191 35 0 35 chr12 127239570 127239599 -17042890 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 21 36 0 0 chr12 127240624 127240652 -17041837 + AT_rich Low_complexity Low_complexity 1 28 0 351 324 38 35 chr12 127241280 127241428 -17041061 + MIR SINE MIR 17 164 -66 1020 165 0 6 chr12 127242440 127242604 -17039885 - FRAM SINE Alu -14 162 1 1550 132 0 5 chr12 127243689 127243909 -17038580 + AluSx SINE Alu 1 219 -93 2484 77 6 0 chr12 127243972 127244283 -17038206 - AluSp SINE Alu 0 313 1 1016 93 0 0 chr12 127244319 127244448 -17038041 - AluSg SINE Alu -181 129 1 22 56 0 0 chr12 127244660 127244696 -17037793 + AT_rich Low_complexity Low_complexity 1 36 0 266 220 60 12 chr12 127244775 127244943 -17037546 + (TA)n Simple_repeat Simple_repeat 1 176 0 2132 71 85 0 chr12 127245633 127245915 -17036574 + AluSp SINE Alu 1 306 -7 2037 114 11 4 chr12 127246382 127246687 -17035802 + AluSq SINE Alu 1 307 0 237 243 0 0 chr12 127246687 127246757 -17035732 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 180 111 0 0 chr12 127247155 127247182 -17035307 + (A)n Simple_repeat Simple_repeat 1 27 0 2001 114 19 32 chr12 127247468 127247783 -17034706 - AluSx SINE Alu -1 311 1 1566 164 8 8 chr12 127247905 127248167 -17034322 - AluJb SINE Alu -50 262 1 2617 55 0 0 chr12 127248325 127248634 -17033855 - AluY SINE Alu -2 309 1 183 42 0 0 chr12 127248851 127248875 -17033614 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1741 114 57 12 chr12 127248878 127249124 -17033365 - AluSx SINE Alu -37 275 19 1985 133 3 10 chr12 127249124 127249423 -17033066 - AluSx SINE Alu -14 298 1 21 0 0 0 chr12 127249425 127249446 -17033043 + AT_rich Low_complexity Low_complexity 1 21 0 337 280 100 40 chr12 127249652 127249802 -17032687 + L1MC4a LINE L1 5740 5898 -1910 433 190 216 0 chr12 127250863 127250979 -17031510 + MER3 DNA MER1_type 1 141 -68 243 188 0 0 chr12 127251274 127251322 -17031167 + (CATA)n Simple_repeat Simple_repeat 2 49 0 2085 149 0 0 chr12 127251322 127251618 -17030871 - AluSx SINE Alu -16 296 1 27 73 0 0 chr12 127251623 127251678 -17030811 + AT_rich Low_complexity Low_complexity 1 55 0 2258 120 0 0 chr12 127253086 127253386 -17029103 + AluSx SINE Alu 1 300 -12 1606 152 0 40 chr12 127253386 127253662 -17028827 + AluJo SINE Alu 40 304 -8 972 96 0 15 chr12 127253932 127254067 -17028422 - FLAM_C SINE Alu 0 133 1 497 297 159 41 chr12 127254390 127254938 -17027551 - L2 LINE L2 0 3313 2703 199 301 55 68 chr12 127255348 127255494 -17026995 - L2 LINE L2 -11 3302 3159 2479 54 3 0 chr12 127255632 127255926 -17026563 - AluY SINE Alu -16 295 1 307 250 9 19 chr12 127256052 127256160 -17026329 + L1ME3A LINE L1 5873 5979 -191 355 168 32 96 chr12 127256197 127256322 -17026167 + L1ME3A LINE L1 5962 6078 -92 2308 92 0 22 chr12 127256518 127256832 -17025657 - AluY SINE Alu -4 307 1 2160 100 11 4 chr12 127257261 127257575 -17024914 + AluSx SINE Alu 1 290 -22 2159 107 10 19 chr12 127257576 127257885 -17024604 + AluSg SINE Alu 1 306 -4 353 75 19 0 chr12 127258097 127258150 -17024339 + (TCCA)n Simple_repeat Simple_repeat 4 57 0 513 343 72 32 chr12 127258150 127258523 -17023966 - L2 LINE L2 -18 3295 2908 2447 66 0 16 chr12 127258562 127258866 -17023623 - AluY SINE Alu -12 299 1 678 126 198 0 chr12 127259085 127259196 -17023293 - AluJo SINE Alu -178 134 2 4215 166 52 39 chr12 127259551 127259605 -17022884 + L1MB8 LINE L1 5279 5331 -847 2406 73 3 3 chr12 127259605 127259905 -17022584 + AluSp SINE Alu 1 300 -13 4215 166 52 39 chr12 127259905 127260739 -17021750 + L1MB8 LINE L1 5331 6178 0 598 315 43 20 chr12 127260765 127261019 -17021470 - MIR SINE MIR 0 262 3 359 297 84 26 chr12 127261629 127261784 -17020705 - L2 LINE L2 0 3313 3150 23 0 0 0 chr12 127261811 127261834 -17020655 + AT_rich Low_complexity Low_complexity 1 23 0 215 317 32 49 chr12 127261931 127262054 -17020435 - L2 LINE L2 -456 2858 2738 2189 98 7 17 chr12 127262235 127262530 -17019959 + AluSc SINE Alu 1 292 -17 2527 238 18 34 chr12 127262971 127263067 -17019422 + L1ME2 LINE L1 23 119 -6277 1643 185 24 3 chr12 127263067 127263365 -17019124 + AluJb SINE Alu 1 304 -8 2527 238 18 34 chr12 127263365 127263923 -17018566 + L1ME2 LINE L1 119 667 -5729 913 175 0 0 chr12 127263923 127264077 -17018412 - AluJb SINE Alu -3 309 156 2521 235 15 70 chr12 127264097 127264498 -17017991 + L1ME2 LINE L1 661 990 -5406 2163 122 0 0 chr12 127264498 127264784 -17017705 - AluSx SINE Alu -26 286 1 2521 235 15 70 chr12 127264784 127265260 -17017229 + L1ME2 LINE L1 990 1490 -4906 326 196 0 0 chr12 127265261 127265317 -17017172 + L1ME2 LINE L1 4140 4195 -2020 720 205 0 16 chr12 127265318 127265440 -17017049 + FLAM_C SINE Alu 2 121 -22 3117 219 111 40 chr12 127265461 127265662 -17016827 + L1ME2 LINE L1 4183 4368 -1865 1928 152 0 23 chr12 127265662 127265964 -17016525 - AluSx SINE Alu -17 295 1 3117 219 111 40 chr12 127265964 127266005 -17016484 + L1ME2 LINE L1 4368 4405 -1828 2200 117 0 3 chr12 127266005 127266305 -17016184 + AluSg1 SINE Alu 1 299 -10 3117 219 111 40 chr12 127266305 127266348 -17016141 + L1ME2 LINE L1 4405 4443 -1790 2451 87 0 0 chr12 127266348 127266647 -17015842 + AluSx SINE Alu 1 299 -13 3117 219 111 40 chr12 127266647 127267587 -17014902 + L1ME2 LINE L1 4443 5314 -919 2282 94 0 0 chr12 127267587 127267874 -17014615 + AluSq SINE Alu 1 287 -26 3117 219 111 40 chr12 127267874 127268533 -17013956 + L1ME2 LINE L1 5314 6212 -21 1955 164 0 0 chr12 127268557 127268849 -17013640 + AluSx SINE Alu 3 294 -18 2340 105 0 0 chr12 127268912 127269218 -17013271 + AluSg SINE Alu 1 306 -4 256 304 108 34 chr12 127269326 127269474 -17013015 + L1ME LINE L1 5378 5536 -585 268 181 60 78 chr12 127269668 127269784 -17012705 + L1ME4a LINE L1 6007 6120 -1 2198 101 0 29 chr12 127269990 127270306 -17012183 - AluSp SINE Alu -6 307 1 2332 88 3 0 chr12 127271022 127271319 -17011170 - AluSx SINE Alu -14 298 1 2333 93 3 0 chr12 127271590 127271890 -17010599 - AluSq SINE Alu -9 304 4 1628 167 4 32 chr12 127272069 127272350 -17010139 + AluJb SINE Alu 1 273 -39 27 62 0 0 chr12 127272722 127272770 -17009719 + AT_rich Low_complexity Low_complexity 1 48 0 2319 115 0 0 chr12 127273255 127273559 -17008930 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr12 127273691 127273713 -17008776 + AT_rich Low_complexity Low_complexity 1 22 0 275 306 8 30 chr12 127274228 127274362 -17008127 + HAL1b LINE L1 219 349 -999 186 43 0 0 chr12 127275316 127275339 -17007150 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2215 113 7 3 chr12 127275342 127275644 -17006845 - AluSq SINE Alu -2 311 9 429 329 21 21 chr12 127276669 127276809 -17005680 - MIR3 SINE MIR -6 202 63 1978 129 19 26 chr12 127276988 127277299 -17005190 - AluSx SINE Alu -2 310 2 1202 181 85 51 chr12 127278497 127278790 -17003699 - AluJb SINE Alu -9 303 1 1002 185 38 45 chr12 127278791 127279056 -17003433 + L1 LINE L1 4214 4476 -1670 1771 119 4 22 chr12 127279057 127279325 -17003164 + AluSx SINE Alu 1 263 -49 1699 127 29 38 chr12 127279577 127279891 -17002598 + AluSx SINE Alu 1 311 -1 180 111 0 0 chr12 127280177 127280204 -17002285 + (T)n Simple_repeat Simple_repeat 1 27 0 248 49 0 24 chr12 127280600 127280622 -17001867 + (TA)n Simple_repeat Simple_repeat 2 24 -17 213 94 0 0 chr12 127280622 127280654 -17001835 + (CA)n Simple_repeat Simple_repeat 2 33 0 248 49 0 24 chr12 127280654 127280672 -17001817 + (TA)n Simple_repeat Simple_repeat 24 41 0 2037 114 11 4 chr12 127280672 127280977 -17001512 - AluSq SINE Alu 0 307 1 2330 102 3 0 chr12 127281445 127281750 -17000739 - AluSp SINE Alu -7 306 1 1077 171 56 12 chr12 127281754 127281983 -17000506 - L1P2 LINE L1 -377 5777 5548 7292 43 7 0 chr12 127281994 127283526 -16998963 - L1PA6 LINE L1 0 6154 4584 1172 132 0 23 chr12 127283649 127283823 -16998666 + AluJo SINE Alu 1 170 -142 537 167 12 0 chr12 127283839 127283923 -16998566 - AluJ/FLAM SINE Alu -225 87 3 383 286 84 45 chr12 127283924 127283948 -16998541 - MLT1K LTR MaLR -46 542 520 2146 119 7 0 chr12 127283948 127284267 -16998222 + AluSq SINE Alu 1 321 0 383 286 84 45 chr12 127284267 127284418 -16998071 - MLT1K LTR MaLR -68 520 358 846 187 93 177 chr12 127284435 127284583 -16997906 + MLT1E LTR MaLR 3 162 -431 1782 162 7 3 chr12 127284583 127284867 -16997622 + AluJo SINE Alu 1 285 -27 846 187 93 177 chr12 127284867 127284925 -16997564 + MLT1E LTR MaLR 162 223 -370 2469 32 0 0 chr12 127284925 127285242 -16997247 + AluY SINE Alu 1 317 0 846 187 93 177 chr12 127285242 127285485 -16997004 + MLT1E LTR MaLR 223 414 -179 1673 214 10 23 chr12 127285485 127285872 -16996617 + MER76 LTR ERV 1 382 -306 341 190 68 147 chr12 127285849 127285934 -16996555 + MER76 LTR ERV 539 606 -82 * 1798 153 0 78 chr12 127285934 127286267 -16996222 - AluJb SINE Alu -5 307 1 341 190 68 147 chr12 127286267 127286344 -16996145 + MER76 LTR ERV 606 688 0 522 224 9 26 chr12 127286344 127286460 -16996029 + MLT1E LTR MaLR 416 529 -64 1125 68 0 0 chr12 127286460 127286592 -16995897 + AluSp SINE Alu 1 132 -181 2080 112 0 35 chr12 127286596 127286909 -16995580 + AluSg SINE Alu 1 302 -8 684 351 105 18 chr12 127288000 127288667 -16993822 + L2 LINE L2 2542 3272 0 304 290 8 81 chr12 127289147 127289271 -16993218 + L2 LINE L2 3153 3267 -5 221 355 100 9 chr12 127289530 127289640 -16992849 - L2 LINE L2 -51 3221 3102 342 299 114 73 chr12 127289775 127289908 -16992581 - L2 LINE L2 -493 2821 2695 2173 109 0 0 chr12 127289908 127290183 -16992306 + AluSx SINE Alu 1 275 -37 216 0 0 0 chr12 127290188 127290212 -16992277 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 342 299 114 73 chr12 127290212 127290483 -16992006 - L2 LINE L2 -622 2692 2394 1987 154 0 3 chr12 127290792 127291085 -16991404 - AluSx SINE Alu -20 292 1 914 153 92 70 chr12 127291178 127291407 -16991082 + MER106A DNA MER1_type 1 234 -2 2322 69 0 3 chr12 127291545 127291836 -16990653 + AluY SINE Alu 1 290 -21 2002 123 28 0 chr12 127291955 127292239 -16990250 + AluSx SINE Alu 1 292 -20 2437 91 0 0 chr12 127292256 127292564 -16989925 + AluSq SINE Alu 5 312 -1 252 0 0 0 chr12 127292564 127292592 -16989897 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 303 211 94 127 chr12 127292955 127293035 -16989454 - L1ME4a LINE L1 -4 6117 6036 1522 160 12 68 chr12 127293035 127293372 -16989117 - L1MA9 LINE L1 0 6312 5995 303 211 94 127 chr12 127293372 127293504 -16988985 - L1ME4a LINE L1 -85 6036 5912 455 118 11 43 chr12 127293508 127293601 -16988888 - LTR67 LTR ERVL 0 557 468 733 315 70 20 chr12 127293979 127294335 -16988154 - L1MC4a LINE L1 -1966 5842 5469 294 29 0 0 chr12 127294677 127294712 -16987777 + (TG)n Simple_repeat Simple_repeat 1 35 0 1581 152 17 40 chr12 127294888 127295184 -16987305 + AluJo SINE Alu 3 291 -21 2323 110 3 0 chr12 127295288 127295598 -16986891 - AluSq SINE Alu -2 311 1 2285 92 0 0 chr12 127296075 127296357 -16986132 + AluSq SINE Alu 3 284 -29 2288 91 0 7 chr12 127296967 127297264 -16985225 + AluSq SINE Alu 3 297 -16 22 0 0 0 chr12 127298196 127298218 -16984271 + AT_rich Low_complexity Low_complexity 1 22 0 2189 118 0 0 chr12 127298226 127298522 -16983967 + AluSx SINE Alu 1 296 -16 574 230 189 0 chr12 127299649 127299797 -16982692 + MER5A DNA MER1_type 14 189 0 1000 206 0 0 chr12 127299956 127300121 -16982368 + AluJo SINE Alu 1 165 -147 594 271 218 14 chr12 127300324 127300604 -16981885 - L2 LINE L2 -1 3312 2976 189 0 0 0 chr12 127300835 127300856 -16981633 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1834 123 0 8 chr12 127301602 127301853 -16980636 + AluSx SINE Alu 1 249 -63 181 295 143 18 chr12 127302364 127302476 -16980013 - L2 LINE L2 -8 3305 3180 189 289 22 0 chr12 127302637 127302682 -16979807 - MIR SINE MIR -62 146 101 2053 89 57 7 chr12 127302697 127302979 -16979510 + AluSc SINE Alu 1 296 -13 705 297 104 7 chr12 127302979 127303248 -16979241 + L2 LINE L2 2222 2516 -798 1009 211 19 111 chr12 127303256 127303376 -16979113 + L1ME1 LINE L1 5835 5964 -202 1982 120 7 0 chr12 127303376 127303660 -16978829 + AluSx SINE Alu 25 310 -2 1009 211 19 111 chr12 127303660 127303900 -16978589 + L1ME1 LINE L1 5964 6162 -4 2214 91 3 29 chr12 127304001 127304310 -16978179 - AluSp SINE Alu -12 301 1 2310 91 3 0 chr12 127305025 127305322 -16977167 - AluSx SINE Alu -14 298 1 973 184 36 10 chr12 127305538 127305734 -16976755 - THE1B LTR MaLR -157 207 7 331 135 0 0 chr12 127305738 127305790 -16976699 - AluJ/FLAM SINE Alu -228 74 23 2446 71 3 0 chr12 127305864 127306174 -16976315 + AluY SINE Alu 1 311 0 253 274 32 0 chr12 127306599 127306661 -16975828 - L2 LINE L2 0 3272 3209 1888 161 0 10 chr12 127306836 127307141 -16975348 - AluSx SINE Alu -10 302 1 204 135 0 0 chr12 127307141 127307178 -16975311 + (T)n Simple_repeat Simple_repeat 1 37 0 1031 111 12 64 chr12 127307330 127307371 -16975118 - MER2 DNA MER2_type -182 163 121 1981 128 0 10 chr12 127307371 127307667 -16974822 + AluSx SINE Alu 1 293 -19 1031 111 12 64 chr12 127307667 127307797 -16974692 - MER2 DNA MER2_type -224 121 1 385 238 27 3 chr12 127308096 127308180 -16974309 + MER2 DNA MER2_type 6 89 -150 1347 150 68 0 chr12 127308505 127308725 -16973764 + MER46A DNA MER2_type 2 236 0 2273 94 7 0 chr12 127308930 127309218 -16973271 - AluSg SINE Alu -18 292 3 198 0 0 0 chr12 127309395 127309417 -16973072 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1247 119 0 0 chr12 127309429 127309589 -16972900 - AluSg/x SINE Alu -19 293 134 2126 124 0 13 chr12 127309589 127309904 -16972585 - AluSx SINE Alu -1 311 1 2065 129 0 26 chr12 127310262 127310565 -16971924 - AluSx SINE Alu -17 295 1 1659 193 0 17 chr12 127310589 127310884 -16971605 - AluJo SINE Alu -22 290 1 2332 90 0 7 chr12 127310884 127311185 -16971304 - AluSx SINE Alu -13 299 1 225 100 0 0 chr12 127311392 127311422 -16971067 + U6 snRNA snRNA 1 30 -77 297 264 36 102 chr12 127312733 127312768 -16969721 + MIR SINE MIR 2 38 -224 2371 75 3 3 chr12 127312768 127313063 -16969426 + AluY SINE Alu 1 295 -16 297 264 36 102 chr12 127313063 127313194 -16969295 + MIR SINE MIR 38 157 -105 2328 107 3 0 chr12 127313318 127313626 -16968863 - AluSq SINE Alu -4 309 1 847 176 154 6 chr12 127313804 127313986 -16968503 - MER3 DNA MER1_type 0 209 1 231 226 19 0 chr12 127314883 127314936 -16967553 - L2 LINE L2 0 3272 3219 191 336 118 0 chr12 127315547 127315657 -16966832 + MIR SINE MIR 59 181 -81 2280 90 3 17 chr12 127315772 127316073 -16966416 - AluSx SINE Alu -15 297 1 237 214 0 18 chr12 127316545 127316601 -16965888 + Charlie4 DNA MER1_type 1885 1939 -22 2129 125 0 0 chr12 127317084 127317373 -16965116 + AluSx SINE Alu 1 289 -23 482 123 0 49 chr12 127317452 127317533 -16964956 + Charlie3 DNA MER1_type 2636 2712 0 1499 119 5 18 chr12 127317730 127317948 -16964541 - AluSg/x SINE Alu -13 299 85 423 302 170 0 chr12 127319616 127319798 -16962691 + MIR SINE MIR 42 254 -8 2400 82 0 19 chr12 127321873 127322189 -16960300 - AluSx SINE Alu -2 310 1 187 176 0 39 chr12 127322189 127322240 -16960249 - MER5A DNA MER1_type -113 76 28 209 305 117 16 chr12 127322571 127322699 -16959790 - MIR3 SINE MIR -60 148 8 1664 187 7 3 chr12 127322913 127323202 -16959287 - AluJb SINE Alu -22 290 1 2606 58 0 3 chr12 127323434 127323742 -16958747 - AluY SINE Alu -4 307 1 180 0 0 0 chr12 127323904 127323924 -16958565 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 2040 96 48 4 chr12 127323924 127324196 -16958293 - AluSx SINE Alu -28 284 1 1790 139 14 11 chr12 127324484 127324771 -16957718 - AluJo SINE Alu -24 288 1 507 303 88 8 chr12 127326358 127326596 -16955893 - MIR SINE MIR 0 262 6 180 0 0 0 chr12 127326831 127326851 -16955638 + (T)n Simple_repeat Simple_repeat 1 20 0 2011 132 7 3 chr12 127327438 127327733 -16954756 + AluSx SINE Alu 1 296 -16 187 204 23 0 chr12 127328511 127328555 -16953934 + L3 LINE CR1 1530 1574 -3 2105 119 3 7 chr12 127330982 127331276 -16951213 - AluSc SINE Alu -16 293 1 329 313 9 9 chr12 127332107 127332222 -16950267 + MER103 DNA DNA 3 117 -49 2255 101 3 0 chr12 127332331 127332628 -16949861 - AluSx SINE Alu -13 299 2 1760 148 11 14 chr12 127335121 127335405 -16947084 - AluJo SINE Alu -16 296 14 2248 107 3 16 chr12 127335932 127336105 -16946384 - AluSx SINE Alu -7 305 136 2209 96 3 13 chr12 127336105 127336417 -16946072 - AluSc SINE Alu 0 309 1 2248 107 3 16 chr12 127336417 127336552 -16945937 - AluSx SINE Alu -176 136 1 2113 128 3 3 chr12 127336554 127336852 -16945637 - AluSx SINE Alu -14 298 1 2348 87 3 0 chr12 127337365 127337663 -16944826 - AluSg SINE Alu -11 299 1 349 306 20 27 chr12 127338305 127338452 -16944037 + L2 LINE L2 3166 3311 -2 2416 56 0 3 chr12 127338774 127339115 -16943374 - AluY SINE Alu 0 340 1 2322 103 0 16 chr12 127339707 127340019 -16942470 - AluSg SINE Alu -3 307 1 232 215 215 0 chr12 127340134 127340199 -16942290 + MIR SINE MIR 172 250 -12 400 284 92 0 chr12 127341643 127341784 -16940705 + MIR SINE MIR 94 247 -15 435 224 103 39 chr12 127346468 127346633 -16935856 - L1ME3A LINE L1 -1 6163 5986 434 246 100 23 chr12 127348728 127348858 -16933631 + MIR SINE MIR 2 141 -121 1069 179 42 5 chr12 127348964 127349176 -16933313 - MIR SINE MIR -42 220 1 325 265 10 29 chr12 127349528 127349630 -16932859 - MIR3 SINE MIR -48 160 61 297 228 18 0 chr12 127349722 127349779 -16932710 + MER81 DNA DNA 43 100 -14 247 211 113 14 chr12 127350015 127350086 -16932403 + MIR SINE MIR 47 124 -138 487 248 10 0 chr12 127350097 127350198 -16932291 - MER81 DNA DNA -12 102 1 294 298 26 9 chr12 127350198 127350312 -16932177 + MIR SINE MIR 119 234 -28 198 167 0 0 chr12 127350391 127350427 -16932062 + (CATATA)n Simple_repeat Simple_repeat 6 41 0 991 129 0 0 chr12 127350431 127350570 -16931919 - FAM SINE Alu -27 158 20 223 230 14 68 chr12 127350792 127350866 -16931623 - L2 LINE L2 -3 3310 3241 2376 92 0 7 chr12 127351015 127351320 -16931169 - AluSg SINE Alu -7 303 1 353 303 11 32 chr12 127351733 127351918 -16930571 - MIR SINE MIR 0 262 82 598 216 65 33 chr12 127352124 127352277 -16930212 + MIR SINE MIR 51 208 -54 1759 156 48 0 chr12 127352344 127352633 -16929856 + AluJb SINE Alu 1 303 -9 297 257 133 18 chr12 127352913 127353026 -16929463 + L2 LINE L2 3147 3272 0 1578 240 112 74 chr12 127353102 127353868 -16928621 - HAL1 LINE L1 -36 2471 1677 1300 212 86 70 chr12 127354081 127354412 -16928077 - HAL1 LINE L1 -901 1606 1261 2220 197 65 33 chr12 127354412 127354934 -16927555 + MLT1F LTR MaLR 1 539 -3 1300 212 86 70 chr12 127354934 127355187 -16927302 - HAL1 LINE L1 -1246 1261 1013 657 266 279 18 chr12 127355205 127355585 -16926904 - HAL1 LINE L1 -2007 500 22 2387 98 0 3 chr12 127355590 127355896 -16926593 - AluSq SINE Alu -8 305 1 645 282 5 35 chr12 127356664 127356866 -16925623 - MER117 DNA MER1_type -1 196 1 212 234 31 0 chr12 127357085 127357149 -16925340 - L3 LINE CR1 -714 863 798 1425 144 19 0 chr12 127357168 127357376 -16925113 + MER58A DNA MER1_type 2 213 -11 225 345 53 0 chr12 127357464 127357577 -16924912 - L3 LINE CR1 -1050 527 409 340 224 13 147 chr12 127357578 127357810 -16924679 - MIR SINE MIR -13 249 49 28 48 0 0 chr12 127357903 127357945 -16924544 + AT_rich Low_complexity Low_complexity 1 42 0 2955 202 91 18 chr12 127357965 127358649 -16923840 - MER50 LTR ERV1 0 734 1 228 191 0 0 chr12 127358712 127358754 -16923735 - MIR SINE MIR -111 151 110 2958 150 78 6 chr12 127358954 127359466 -16923023 + MER44D DNA MER2_type 2 605 0 570 269 163 27 chr12 127359718 127359975 -16922514 + MER102b DNA MER1_type 1 292 -49 1937 147 0 13 chr12 127360182 127360481 -16922008 - AluSx SINE Alu -17 295 1 2442 43 0 17 chr12 127360845 127361144 -16921345 + AluY SINE Alu 1 294 -17 267 31 0 0 chr12 127361619 127361651 -16920838 + (CA)n Simple_repeat Simple_repeat 2 33 0 595 244 45 20 chr12 127362039 127362240 -16920249 - LTR16C LTR ERVL -3 488 283 242 208 62 0 chr12 127362258 127362306 -16920183 - MER7A DNA MER2_type 0 346 296 1944 137 18 7 chr12 127362306 127362591 -16919898 + AluSx SINE Alu 1 288 -24 1514 181 83 3 chr12 127362604 127362892 -16919597 - MER7A DNA MER2_type -36 310 2 1391 137 82 51 chr12 127362909 127362936 -16919553 - MER33 DNA MER1_type -2283 302 277 2476 91 0 0 chr12 127362936 127363244 -16919245 - AluSq SINE Alu -5 308 1 1391 137 82 51 chr12 127363244 127363509 -16918980 - MER33 DNA MER1_type -2308 277 1 289 324 229 0 chr12 127363509 127363677 -16918812 - LTR16C LTR ERVL -196 295 89 2253 95 41 52 chr12 127363718 127364086 -16918403 - THE1B LTR MaLR 0 364 1 1826 157 10 26 chr12 127364137 127364443 -16918046 - AluSq SINE Alu -12 301 1 465 228 16 47 chr12 127364540 127364667 -16917822 - MER91C DNA MER1_type -1 139 17 323 316 52 7 chr12 127365308 127365444 -16917045 - MIR3 SINE MIR -1 207 66 251 267 233 0 chr12 127365452 127365538 -16916951 + L2 LINE L2 3163 3268 -4 520 234 7 91 chr12 127365664 127365818 -16916671 + MLT1K LTR MaLR 125 265 -323 549 248 53 58 chr12 127365836 127366042 -16916447 + MLT1K LTR MaLR 367 571 -17 1115 302 58 0 chr12 127366134 127366511 -16915978 + MLT1L LTR MaLR 90 488 -127 1931 171 0 0 chr12 127366688 127366992 -16915497 + AluJb SINE Alu 1 304 -8 1046 148 22 91 chr12 127366993 127367223 -16915266 - MER20 DNA MER1_type -4 215 2 1649 201 62 5 chr12 127367275 127367721 -16914768 + MLT2B1 LTR ERVL 1 515 0 3677 172 26 16 chr12 127367771 127367978 -16914511 + L1MB4 LINE L1 5486 5689 -491 2261 119 0 10 chr12 127367978 127368281 -16914208 - AluSx SINE Alu -11 301 2 3677 172 26 16 chr12 127368281 127368759 -16913730 + L1MB4 LINE L1 5689 6178 -2 2234 152 22 8 chr12 127368941 127369296 -16913193 + THE1B LTR MaLR 5 364 0 367 284 37 0 chr12 127369301 127369435 -16913054 - MIR SINE MIR -14 248 110 200 350 0 0 chr12 127369991 127370051 -16912438 + (TG)n Simple_repeat Simple_repeat 2 61 0 384 284 26 26 chr12 127370874 127371029 -16911460 - MIR SINE MIR -55 207 53 811 159 8 0 chr12 127371243 127371375 -16911114 + FLAM_C SINE Alu 1 133 0 350 200 0 100 chr12 127371383 127371426 -16911063 - MER5A DNA MER1_type -80 109 80 2047 141 7 0 chr12 127371426 127371724 -16910765 - AluSx SINE Alu -12 300 1 350 200 0 100 chr12 127371724 127371780 -16910709 - MER5A DNA MER1_type -109 80 20 235 313 104 31 chr12 127371939 127372035 -16910454 - L2 LINE L2 -51 3221 3119 257 322 63 85 chr12 127372123 127372521 -16909968 - L2 LINE L2 -926 2388 2000 1540 212 38 91 chr12 127372521 127372754 -16909735 + L1MC4 LINE L1 7380 7573 -469 2368 103 0 25 chr12 127372754 127373075 -16909414 + AluSq SINE Alu 1 313 0 1540 212 38 91 chr12 127373075 127373346 -16909143 + L1MC4 LINE L1 7573 7857 -185 697 138 18 0 chr12 127373372 127373481 -16909008 + MLT1A1 LTR MaLR 1 111 -254 784 170 22 7 chr12 127373525 127373660 -16908829 + MLT1A1 LTR MaLR 226 362 -3 494 222 74 0 chr12 127373668 127373827 -16908662 + L1MC4 LINE L1 7880 7995 0 1746 171 38 0 chr12 127373894 127374181 -16908308 + AluJo SINE Alu 1 298 -14 295 284 131 22 chr12 127374329 127374512 -16907977 - L2 LINE L2 -1402 1912 1710 933 144 131 0 chr12 127374936 127375096 -16907393 - MSTA LTR MaLR 0 428 248 * 1422 119 43 0 chr12 127375094 127375304 -16907185 - MLT1B LTR MaLR -147 243 25 489 284 25 38 chr12 127375399 127375638 -16906851 + L2 LINE L2 3078 3313 0 214 302 0 0 chr12 127376312 127376365 -16906124 - L2 LINE L2 -1 3271 3219 705 279 55 118 chr12 127376490 127377077 -16905412 + LTR67 LTR ERVL 1 550 -7 4360 72 12 5 chr12 127377254 127377827 -16904662 - L1PA10 LINE L1 -11 6157 5581 26 93 0 0 chr12 127378080 127378155 -16904334 + AT_rich Low_complexity Low_complexity 1 75 0 660 264 151 14 chr12 127378157 127378441 -16904048 - L1MC4 LINE L1 -31 8011 7689 353 330 60 78 chr12 127379329 127379843 -16902646 + L2 LINE L2 2703 3220 -52 202 293 0 0 chr12 127379880 127379938 -16902551 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 443 231 88 54 chr12 127380750 127380897 -16901592 - MER102b DNA MER1_type -1 340 189 2379 109 0 0 chr12 127381005 127381307 -16901182 + AluSx SINE Alu 1 302 -10 338 190 250 10 chr12 127381386 127381486 -16901003 + MLT1I LTR MaLR 279 402 -7 276 205 99 112 chr12 127381502 127381663 -16900826 - MER102b DNA MER1_type -182 159 1 234 301 36 48 chr12 127381665 127381748 -16900741 - L2 LINE L2 -54 3218 3137 2341 94 17 0 chr12 127381776 127382073 -16900416 + AluSx SINE Alu 3 304 -8 193 367 11 0 chr12 127382367 127382457 -16900032 - L2 LINE L2 -512 2802 2712 184 294 126 42 chr12 127382498 127382641 -16899848 - L2 LINE L2 0 3313 3159 243 185 0 56 chr12 127382676 127382730 -16899759 - L2 LINE L2 0 3313 3263 183 42 0 0 chr12 127382814 127382838 -16899651 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 306 175 0 0 chr12 127382838 127382891 -16899598 + CT-rich Low_complexity Low_complexity 9 64 0 1942 130 50 0 chr12 127382998 127383275 -16899214 - AluSx SINE Alu -21 291 1 213 272 184 10 chr12 127383275 127383378 -16899111 + MIR SINE MIR 122 242 -20 373 312 0 0 chr12 127433391 127433500 -16848989 + G-rich Low_complexity Low_complexity 1 109 0 831 279 178 31 chr12 127433918 127434374 -16848115 - MLT1L LTR MaLR -76 539 17 237 257 28 111 chr12 127434672 127434762 -16847727 - MIR SINE MIR -129 133 58 2288 109 6 3 chr12 127434762 127435073 -16847416 - AluSx SINE Alu 0 312 1 237 257 28 111 chr12 127435073 127435126 -16847363 - MIR SINE MIR -204 58 2 270 0 0 0 chr12 127435347 127435377 -16847112 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2148 101 10 0 chr12 127435377 127435659 -16846830 - AluSx SINE Alu -27 285 1 24 0 0 0 chr12 127435664 127435688 -16846801 + AT_rich Low_complexity Low_complexity 1 24 0 415 266 84 13 chr12 127436385 127436539 -16845950 + MER20B DNA MER1_type 10 174 -609 6322 51 4 0 chr12 127437311 127438040 -16844449 + L1PA4 LINE L1 5420 6151 -4 1027 160 46 0 chr12 127438388 127438563 -16843926 - L1MB5 LINE L1 -257 5917 5735 862 288 57 0 chr12 127438633 127438862 -16843627 - MIR SINE MIR 0 262 21 1143 230 43 54 chr12 127438863 127439273 -16843216 - L1ME1 LINE L1 -2 6164 5763 2361 81 10 0 chr12 127439273 127439570 -16842919 - AluSp SINE Alu -13 300 1 1254 278 43 30 chr12 127439592 127440197 -16842292 - L1ME3A LINE L1 -5 6099 5503 1705 184 0 0 chr12 127440197 127440479 -16842010 + AluJo SINE Alu 2 283 -29 204 97 0 0 chr12 127440482 127440513 -16841976 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 1254 278 43 30 chr12 127440513 127440793 -16841696 - L1ME3A LINE L1 -602 5502 5122 803 117 31 0 chr12 127440802 127440930 -16841559 - L1MB4 LINE L1 0 6180 6049 1236 20 0 7 chr12 127440930 127441076 -16841413 - AluY SINE Alu -13 298 154 1484 174 12 0 chr12 127441097 127441350 -16841139 - L1MB5 LINE L1 -108 6066 5811 873 181 16 52 chr12 127441359 127441552 -16840937 + L1M3 LINE L1 5409 5594 -586 1581 252 93 21 chr12 127441553 127442212 -16840277 - L1ME3A LINE L1 -951 5129 4424 537 231 151 0 chr12 127442213 127442438 -16840051 - LTR50 LTR ERVL -2 793 535 2863 239 144 37 chr12 127442610 127442760 -16839729 - L1ME3A LINE L1 -2028 4052 3920 2460 67 3 10 chr12 127442760 127443073 -16839416 + AluY SINE Alu 1 311 0 2863 239 144 37 chr12 127443073 127444121 -16838368 - L1ME3A LINE L1 -2160 3920 2725 228 86 0 0 chr12 127444132 127444167 -16838322 + (TATG)n Simple_repeat Simple_repeat 2 36 0 959 146 13 7 chr12 127444172 127444323 -16838166 - FRAM SINE Alu -25 151 1 445 287 15 0 chr12 127444323 127444459 -16838030 - L1ME3A LINE L1 -3352 2728 2591 266 231 11 22 chr12 127444509 127444603 -16837886 - L1ME3A LINE L1 -4781 1220 841 1228 270 106 46 chr12 127444604 127446459 -16836030 - L1MEc LINE L1 -3477 2738 791 3583 111 22 10 chr12 127446932 127447437 -16835052 + MER9 LTR ERVK 1 511 0 230 313 10 50 chr12 127448160 127448259 -16834230 + L2 LINE L2 3182 3276 -37 3927 138 3 2 chr12 127448327 127448899 -16833590 - L1PA16 LINE L1 -10 6156 5584 416 255 128 13 chr12 127448970 127449119 -16833370 - MIR SINE MIR -51 211 46 1812 197 19 33 chr12 127449251 127449616 -16832873 - MLT1A1 LTR MaLR 0 365 6 456 239 93 78 chr12 127449857 127450062 -16832427 - MIR SINE MIR -3 259 52 617 232 95 24 chr12 127450935 127451103 -16831386 - MLT1J2 LTR MaLR -2 448 269 406 156 34 28 chr12 127451570 127451749 -16830740 + (TG)n Simple_repeat Simple_repeat 1 180 0 447 136 40 28 chr12 127451766 127451942 -16830547 + (TG)n Simple_repeat Simple_repeat 2 179 0 318 159 28 44 chr12 127451969 127452151 -16830338 + (TG)n Simple_repeat Simple_repeat 2 180 0 371 110 46 18 chr12 127452219 127452328 -16830161 + (TG)n Simple_repeat Simple_repeat 1 112 0 272 156 50 21 chr12 127452360 127452501 -16829988 + (TG)n Simple_repeat Simple_repeat 2 146 0 332 132 19 0 chr12 127452517 127452570 -16829919 + LTR40a LTR ERVL 466 519 0 396 189 28 49 chr12 127452597 127452735 -16829754 - MLT1J2 LTR MaLR -250 196 66 432 229 93 87 chr12 127452929 127452984 -16829505 - MIR SINE MIR -46 216 163 2176 100 0 4 chr12 127452984 127453310 -16829179 - AluSx SINE Alu 0 326 2 432 229 93 87 chr12 127453310 127453436 -16829053 - MIR SINE MIR -99 163 33 1122 165 85 10 chr12 127453638 127453838 -16828651 + MER20 DNA MER1_type 1 215 -4 23 33 0 0 chr12 127454275 127454305 -16828184 + AT_rich Low_complexity Low_complexity 1 30 0 810 176 29 0 chr12 127454308 127454444 -16828045 - MER58B DNA MER1_type 0 341 202 1413 40 114 0 chr12 127455189 127455345 -16827144 - L1PA10 LINE L1 0 6168 5988 204 40 0 0 chr12 127455345 127455370 -16827119 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 1413 40 114 0 chr12 127455370 127455389 -16827100 - L1PA10 LINE L1 -180 5988 5973 302 287 139 28 chr12 127455655 127455763 -16826726 - L2 LINE L2 -10 3262 3143 922 289 115 63 chr12 127455992 127456395 -16826094 - MLT1K LTR MaLR 0 588 147 2508 132 12 47 chr12 127456395 127456728 -16825761 + MLT1B LTR MaLR 2 320 -70 1918 135 0 0 chr12 127456728 127456988 -16825501 + AluSx SINE Alu 36 295 -17 2508 132 12 47 chr12 127456988 127457057 -16825432 + MLT1B LTR MaLR 320 390 0 922 289 115 63 chr12 127457057 127457211 -16825278 - MLT1K LTR MaLR -441 147 2 794 279 88 4 chr12 127457228 127457454 -16825035 - MIR SINE MIR -10 252 8 3264 116 34 82 chr12 127458239 127458519 -16823970 - MER41B LTR ERV1 0 635 398 1722 84 0 0 chr12 127458519 127458732 -16823757 - AluSg SINE Alu -45 265 53 3264 116 34 82 chr12 127458732 127459064 -16823425 - MER41B LTR ERV1 -237 398 52 1620 169 0 8 chr12 127459082 127459348 -16823141 + AluJo SINE Alu 27 290 -22 2305 117 0 0 chr12 127459351 127459659 -16822830 + AluSq SINE Alu 1 308 -5 1731 129 38 8 chr12 127459761 127460024 -16822465 - L1PA8A LINE L1 0 6131 5861 29 47 0 0 chr12 127461564 127461607 -16820882 + AT_rich Low_complexity Low_complexity 1 43 0 534 352 122 9 chr12 127462130 127462360 -16820129 + MLT1K LTR MaLR 96 351 -237 397 258 97 24 chr12 127462423 127462547 -16819942 + MLT1K LTR MaLR 456 588 0 896 239 178 58 chr12 127463055 127463521 -16818968 + MLT1H1 LTR MaLR 9 538 -4 659 281 74 60 chr12 127463509 127463876 -16818613 - MLT1L LTR MaLR -32 583 212 * 193 57 57 0 chr12 127464266 127464301 -16818188 + CT-rich Low_complexity Low_complexity 2 38 0 1648 158 25 35 chr12 127464305 127464590 -16817899 - AluJo SINE Alu -30 282 1 692 281 5 10 chr12 127465027 127465230 -16817259 + MIR SINE MIR 46 247 -15 2241 88 3 3 chr12 127465260 127465571 -16816918 + AluSx SINE Alu 1 311 0 196 322 22 100 chr12 127465926 127466106 -16816383 + L2 LINE L2 3037 3202 -70 * 440 278 66 57 chr12 127466094 127466306 -16816183 - L2 LINE L2 0 3313 3100 985 302 75 10 chr12 127466313 127466724 -16815765 + LTR16A LTR ERVL 8 445 -5 767 265 35 16 chr12 127466760 127467017 -16815472 - L2 LINE L2 -229 3084 2823 190 206 0 0 chr12 127467062 127467096 -16815393 + L2 LINE L2 3271 3304 -9 * 320 184 78 48 chr12 127467087 127467190 -16815299 + MIR SINE MIR 32 137 -125 417 159 45 11 chr12 127467963 127468051 -16814438 - MIR SINE MIR -115 147 57 351 323 30 6 chr12 127468096 127468263 -16814226 - MIR SINE MIR -48 214 44 594 140 0 110 chr12 127468300 127468436 -16814053 + MIR SINE MIR 96 216 -46 197 246 18 0 chr12 127468539 127468596 -16813893 - L2 LINE L2 -1 3312 3255 182 286 29 14 chr12 127468567 127468637 -16813852 - MIR SINE MIR -24 238 168 * 408 255 0 19 chr12 127468924 127469030 -16813459 + HsTC2 DNA Tc2 1 104 -1794 2135 134 10 0 chr12 127469096 127469403 -16813086 + AluSx SINE Alu 1 310 -2 1411 190 22 58 chr12 127469424 127469735 -16812754 - AluJo SINE Alu -12 300 1 914 231 19 30 chr12 127469740 127470004 -16812485 + HsTC2 DNA Tc2 1542 1802 -96 1365 154 63 20 chr12 127470004 127470282 -16812207 + L1MB7 LINE L1 5634 5911 -243 2259 165 89 38 chr12 127470282 127470756 -16811733 + Ricksha DNA DNA 108 605 -2641 1261 164 31 12 chr12 127470745 127471144 -16811345 + Ricksha DNA DNA 2801 3233 -13 * 1344 185 3 56 chr12 127471155 127471479 -16811010 + L1MB8 LINE L1 5872 6178 0 297 240 190 0 chr12 127471985 127472106 -16810383 + L1ME LINE L1 5518 5661 -460 397 294 98 12 chr12 127472288 127472451 -16810038 + MIR SINE MIR 86 262 0 251 88 0 0 chr12 127472939 127472973 -16809516 + AluSx SINE Alu 1 34 -266 6022 120 214 92 chr12 127472976 127474488 -16808001 - pTR5 LTR ERV1 0 2438 743 2093 69 10 59 chr12 127474488 127474591 -16807898 + AluSx SINE Alu 31 137 -175 1832 92 0 0 chr12 127474591 127474819 -16807670 + AluSp SINE Alu 1 228 -85 2093 69 10 59 chr12 127474819 127475003 -16807486 + AluSx SINE Alu 137 304 -8 1678 241 53 2 chr12 127475512 127475943 -16806546 - L1ME3 LINE L1 -55 6107 5655 513 326 87 11 chr12 127475943 127476033 -16806456 + L2 LINE L2 2592 2674 -639 1016 179 0 0 chr12 127476033 127476189 -16806300 - FRAM SINE Alu -10 156 1 513 326 87 11 chr12 127476189 127476545 -16805944 + L2 LINE L2 2674 3073 -240 1994 119 82 20 chr12 127476715 127477068 -16805421 - THE1C LTR MaLR 0 375 1 293 333 56 7 chr12 127477094 127477238 -16805251 + MIR SINE MIR 1 151 -111 300 254 37 82 chr12 127477303 127477437 -16805052 - MIR SINE MIR -111 151 24 2172 120 16 7 chr12 127477647 127477955 -16804534 - AluSq SINE Alu -2 311 1 532 247 86 5 chr12 127478249 127478435 -16804054 - L2 LINE L2 -4 3309 3109 234 304 36 27 chr12 127478627 127478739 -16803750 - MIR SINE MIR -60 148 36 257 229 71 14 chr12 127479281 127479351 -16803138 - MIR SINE MIR -119 143 70 2322 87 0 7 chr12 127479378 127479677 -16802812 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr12 127480031 127480061 -16802428 + AT_rich Low_complexity Low_complexity 1 30 0 679 212 164 21 chr12 127480075 127480264 -16802225 + MER20 DNA MER1_type 1 216 -3 1279 268 48 48 chr12 127480265 127480852 -16801637 - HAL1 LINE L1 -30 2477 1891 305 329 26 7 chr12 127480875 127481030 -16801459 - MIR SINE MIR -71 191 34 2015 156 0 3 chr12 127481098 127481406 -16801083 + AluSx SINE Alu 1 307 -5 254 265 24 12 chr12 127481451 127481534 -16800955 + L2 LINE L2 3189 3272 0 326 250 50 0 chr12 127481618 127481698 -16800791 + MIR SINE MIR 93 176 -86 617 213 7 20 chr12 127482084 127482234 -16800255 - MIR SINE MIR -1 261 114 397 228 12 12 chr12 127482821 127482988 -16799501 + (CATA)n Simple_repeat Simple_repeat 4 170 0 189 178 0 0 chr12 127483029 127483074 -16799415 + (CA)n Simple_repeat Simple_repeat 2 46 0 452 247 3 0 chr12 127483099 127483398 -16799091 + (CA)n Simple_repeat Simple_repeat 1 300 0 315 276 0 11 chr12 127483422 127483509 -16798980 + L2 LINE L2 3185 3270 -2 325 271 94 21 chr12 127483955 127484051 -16798438 - MIR SINE MIR -86 122 20 360 336 47 17 chr12 127484435 127484670 -16797819 + L2 LINE L2 2387 2628 -686 458 271 152 32 chr12 127484756 127484946 -16797543 - MLT1I LTR MaLR 0 450 284 2028 162 0 0 chr12 127484946 127485243 -16797246 + AluJo SINE Alu 4 300 -12 458 271 152 32 chr12 127485243 127485383 -16797106 - MLT1I LTR MaLR -166 284 69 330 265 19 15 chr12 127485605 127485866 -16796623 + GA-rich Low_complexity Low_complexity 1 262 0 204 158 0 0 chr12 127486105 127486143 -16796346 + GA-rich Low_complexity Low_complexity 1 38 0 191 35 0 35 chr12 127486280 127486309 -16796180 + (CAGGG)n Simple_repeat Simple_repeat 1 28 0 337 250 130 0 chr12 127486578 127486686 -16795803 + MER5C DNA MER1_type 3 124 -200 187 189 0 0 chr12 127486791 127486828 -16795661 + MER5C DNA MER1_type 288 324 0 * 520 327 55 45 chr12 127486828 127487026 -16795463 + L2 LINE L2 2618 2813 -459 2992 149 37 12 chr12 127487026 127487543 -16794946 - LTR26B LTR ERV1 -1 530 1 520 327 55 45 chr12 127487543 127487974 -16794515 + L2 LINE L2 2813 3259 -13 192 77 0 0 chr12 127487974 127488000 -16794489 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 30 27 0 0 chr12 127488466 127488503 -16793986 + AT_rich Low_complexity Low_complexity 1 37 0 702 327 0 0 chr12 127488572 127488777 -16793712 + MIR SINE MIR 14 218 -44 522 259 78 36 chr12 127488936 127489102 -16793387 - MER96 DNA MER1_type -2 173 1 486 0 0 0 chr12 127489197 127489251 -16793238 + (TA)n Simple_repeat Simple_repeat 1 54 0 2208 108 3 3 chr12 127489251 127489548 -16792941 + AluSx SINE Alu 2 298 -14 204 255 0 0 chr12 127489548 127489595 -16792894 + (TA)n Simple_repeat Simple_repeat 2 48 0 228 143 48 0 chr12 127489595 127489637 -16792852 - L1MC4 LINE L1 -1337 6705 6662 186 143 0 0 chr12 127489638 127489673 -16792816 + (CA)n Simple_repeat Simple_repeat 1 35 0 550 277 72 63 chr12 127489957 127490453 -16792036 + L1MEd LINE L1 774 1312 -4914 2259 123 0 7 chr12 127490453 127490763 -16791726 + AluSx SINE Alu 1 308 -4 550 277 72 63 chr12 127490763 127490817 -16791672 + L1MEd LINE L1 1312 1364 -4862 616 302 144 10 chr12 127491126 127491431 -16791058 - L2 LINE L2 -1 3312 2967 21 0 0 0 chr12 127491613 127491634 -16790855 + AT_rich Low_complexity Low_complexity 1 21 0 2513 65 0 0 chr12 127491636 127491943 -16790546 + AluY SINE Alu 1 307 -4 525 289 27 0 chr12 127492480 127492666 -16789823 + MIR SINE MIR 56 241 -21 545 283 11 91 chr12 127493282 127493443 -16789046 - MIR SINE MIR -1 261 128 2235 110 3 25 chr12 127493443 127493762 -16788727 + AluSx SINE Alu 1 312 0 545 283 11 91 chr12 127493762 127493865 -16788624 - MIR SINE MIR -134 128 18 2293 139 39 34 chr12 127494033 127494578 -16787911 + MLT2A2 LTR ERVL 1 554 0 317 226 36 24 chr12 127494637 127494721 -16787768 - MER103 DNA DNA -45 121 37 21 0 0 0 chr12 127494722 127494743 -16787746 + AT_rich Low_complexity Low_complexity 1 21 0 827 288 133 13 chr12 127495603 127495988 -16786501 + MLT1J2 LTR MaLR 1 431 -19 435 324 12 73 chr12 127496062 127496198 -16786291 + MIR SINE MIR 20 134 -128 2278 97 37 0 chr12 127496198 127496497 -16785992 + AluSx SINE Alu 3 312 0 435 324 12 73 chr12 127496497 127496619 -16785870 + MIR SINE MIR 134 262 0 379 216 67 22 chr12 127496813 127496947 -16785542 + L2 LINE L2 3174 3313 0 936 257 77 28 chr12 127497113 127497436 -16785053 + MER102b DNA MER1_type 2 340 -1 1775 201 82 16 chr12 127497631 127498069 -16784420 + MLT1C LTR MaLR 1 467 0 23 86 0 0 chr12 127498071 127498129 -16784360 + AT_rich Low_complexity Low_complexity 1 58 0 2366 79 7 0 chr12 127498133 127498424 -16784065 + AluSp SINE Alu 1 293 -20 180 261 0 0 chr12 127498450 127498496 -16783993 - L2 LINE L2 -229 3043 2998 553 246 88 0 chr12 127498583 127498754 -16783735 + MIR SINE MIR 77 262 0 754 249 78 15 chr12 127498849 127499054 -16783435 + LTR33 LTR ERVL 1 218 -303 699 207 73 12 chr12 127499069 127499233 -16783256 + MER74A LTR ERVL 1 174 -384 1946 167 52 54 chr12 127499324 127499677 -16782812 + MER74A LTR ERVL 135 488 -70 2345 85 3 3 chr12 127499677 127499971 -16782518 - AluSc SINE Alu -15 294 1 1946 167 52 54 chr12 127499971 127500042 -16782447 + MER74A LTR ERVL 488 558 0 497 264 229 31 chr12 127500042 127500300 -16782189 + LTR33 LTR ERVL 211 519 -2 277 281 67 11 chr12 127500477 127500566 -16781923 + L2 LINE L2 3178 3271 -1 253 203 0 51 chr12 127500653 127500712 -16781777 + L2 LINE L2 3217 3272 0 263 288 255 24 chr12 127501649 127501861 -16780628 + MIR SINE MIR 2 262 0 1401 234 82 65 chr12 127502057 127502561 -16779928 - LTR33A LTR ERVL -17 506 18 454 206 175 6 chr12 127502591 127502751 -16779738 - MER53 DNA DNA 0 189 3 197 139 23 0 chr12 127502942 127502985 -16779504 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 599 335 59 32 chr12 127503024 127503466 -16779023 - L2 LINE L2 0 3272 2819 272 237 65 11 chr12 127503467 127503560 -16778929 - MER91C DNA MER1_type -2 138 41 292 358 5 40 chr12 127503654 127503855 -16778634 - L2 LINE L2 -576 2738 2545 1529 175 0 74 chr12 127504272 127504597 -16777892 + AluJo SINE Alu 1 301 -11 1385 246 53 19 chr12 127504602 127505017 -16777472 + HsTC2a DNA Tc2 1 429 -315 2272 91 3 3 chr12 127505019 127505316 -16777173 + AluY SINE Alu 1 297 -14 204 255 0 0 chr12 127505316 127505363 -16777126 + (TA)n Simple_repeat Simple_repeat 2 48 0 228 143 48 0 chr12 127505363 127505405 -16777084 - L1MC4 LINE L1 -1337 6705 6662 186 143 0 0 chr12 127505406 127505441 -16777048 + (CA)n Simple_repeat Simple_repeat 1 35 0 522 281 72 63 chr12 127505725 127506221 -16776268 + L1MEd LINE L1 774 1312 -4914 2259 123 0 7 chr12 127506221 127506531 -16775958 + AluSx SINE Alu 1 308 -4 522 281 72 63 chr12 127506531 127506585 -16775904 + L1MEd LINE L1 1312 1364 -4862 616 302 144 10 chr12 127506894 127507199 -16775290 - L2 LINE L2 -1 3312 2967 21 0 0 0 chr12 127507381 127507402 -16775087 + AT_rich Low_complexity Low_complexity 1 21 0 2513 65 0 0 chr12 127507404 127507711 -16774778 + AluY SINE Alu 1 307 -4 320 96 0 19 chr12 127508303 127508355 -16774134 + HsTC2a DNA Tc2 645 695 -47 831 237 41 76 chr12 127508368 127508685 -16773804 + L1ME3A LINE L1 5850 6155 -15 264 164 0 98 chr12 127508685 127508746 -16773743 + HsTC2a DNA Tc2 688 742 0 1968 161 6 15 chr12 127508938 127509262 -16773227 - MER47B DNA MER2_type 0 418 98 660 142 30 56 chr12 127509284 127509442 -16773047 - L1P5 LINE L1 -546 5608 5444 1788 137 11 19 chr12 127509574 127509844 -16772645 - AluJb SINE Alu -44 268 1 529 180 40 0 chr12 127509844 127509944 -16772545 - MER47B DNA MER2_type -312 106 3 36 53 0 0 chr12 127509960 127510017 -16772472 + AT_rich Low_complexity Low_complexity 1 57 0 1695 107 13 13 chr12 127510390 127510624 -16771865 + AluSg/x SINE Alu 72 305 -7 253 235 52 43 chr12 127510643 127510758 -16771731 + L1ME4a LINE L1 6003 6118 -3 2234 147 90 25 chr12 127510766 127511135 -16771354 - L1MB5 LINE L1 -211 5963 5560 1532 187 10 27 chr12 127511135 127511429 -16771060 - AluJo SINE Alu -16 296 8 2234 147 90 25 chr12 127511429 127511494 -16770995 - L1MB5 LINE L1 -614 5560 5501 258 342 13 0 chr12 127511968 127512047 -16770442 - L2 LINE L2 -86 3186 3107 354 336 41 0 chr12 127512767 127512889 -16769600 - L2 LINE L2 -9 3304 3178 1955 199 54 119 chr12 127513093 127513664 -16768825 - L1ME3A LINE L1 -15 6155 5636 1688 170 7 0 chr12 127513664 127513941 -16768548 - AluJb SINE Alu -15 297 19 1955 199 54 119 chr12 127513941 127514069 -16768420 - L1ME3A LINE L1 -534 5636 5501 380 306 15 45 chr12 127514179 127514313 -16768176 - L2 LINE L2 0 3313 3184 888 296 63 58 chr12 127515015 127515609 -16766880 - L2 LINE L2 -3 3269 2674 766 270 54 24 chr12 127515760 127516062 -16766427 + LTR16C LTR ERVL 36 397 -94 1409 290 59 0 chr12 127516080 127516484 -16766005 + LTR16A LTR ERVL 16 443 -7 287 187 107 13 chr12 127516496 127516571 -16765918 + LTR16C LTR ERVL 407 488 -3 225 270 63 40 chr12 127517006 127517132 -16765357 + LTR16C LTR ERVL 1 129 -362 555 328 53 95 chr12 127518365 127518816 -16763673 - L2 LINE L2 -1 3271 2840 1963 136 0 4 chr12 127518852 127519155 -16763334 - AluSx SINE Alu 0 306 5 394 188 0 0 chr12 127519295 127519359 -16763130 - MIR SINE MIR -78 130 67 255 250 0 42 chr12 127519537 127519633 -16762856 - MER113 DNA MER1_type? -408 113 22 2215 103 6 16 chr12 127519866 127520177 -16762312 + AluSq SINE Alu 1 308 -5 918 228 165 4 chr12 127520567 127520804 -16761685 - ORSL DNA AcHobo 0 275 1 769 274 111 48 chr12 127520810 127521161 -16761328 + MLT1K LTR MaLR 2 374 -214 23 0 0 0 chr12 127521851 127521874 -16760615 + GC_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chr12 127522398 127522433 -16760056 + (T)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr12 127522529 127522552 -16759937 + AT_rich Low_complexity Low_complexity 1 23 0 810 221 0 0 chr12 127522555 127522700 -16759789 + FRAM SINE Alu 1 144 -32 693 290 84 8 chr12 127522720 127522958 -16759531 - MIR SINE MIR 0 262 7 311 308 47 0 chr12 127522967 127523074 -16759415 + MIR3 SINE MIR 75 186 -22 380 255 10 20 chr12 127523781 127523879 -16758610 - MER94 DNA DNA 0 134 38 341 207 46 0 chr12 127523911 127523998 -16758491 - L1MB4 LINE L1 -1 6179 6089 4967 122 21 5 chr12 127524007 127524817 -16757672 - L1MA4 LINE L1 -281 6019 5200 199 235 276 31 chr12 127524867 127524965 -16757524 + MIR SINE MIR 39 160 -102 423 294 173 61 chr12 127526097 127526570 -16755919 - MLT1L LTR MaLR -87 528 3 216 0 0 0 chr12 127526625 127526649 -16755840 + (T)n Simple_repeat Simple_repeat 1 24 0 562 319 54 0 chr12 127527011 127527215 -16755274 - MIR SINE MIR -17 245 31 622 299 26 10 chr12 127527312 127527506 -16754983 - MIR SINE MIR -37 225 29 544 250 57 78 chr12 127527704 127528060 -16754429 - MLT1J LTR MaLR -45 466 1 1482 237 32 52 chr12 127528437 127528876 -16753613 - LTR16A LTR ERVL 0 450 21 278 310 103 17 chr12 127529922 127530038 -16752451 + MIR SINE MIR 19 144 -118 202 65 0 65 chr12 127530359 127530389 -16752100 + (TTCTG)n Simple_repeat Simple_repeat 3 31 -14 2097 79 40 4 chr12 127530389 127530667 -16751822 - AluSg SINE Alu -17 293 6 202 65 0 65 chr12 127530667 127530682 -16751807 + (TTCTG)n Simple_repeat Simple_repeat 31 45 0 247 250 125 35 chr12 127530987 127531131 -16751358 + MIR3 SINE MIR 3 159 -49 2633 198 72 16 chr12 127531415 127531972 -16750517 + MLT1G1 LTR MaLR 1 588 -7 1843 73 51 0 chr12 127532196 127532430 -16750059 - AluSc SINE Alu -8 301 56 411 276 31 8 chr12 127532430 127532557 -16749932 - MIR SINE MIR -98 164 35 625 212 238 5 chr12 127532692 127532885 -16749604 - MIR SINE MIR -17 245 8 386 352 4 0 chr12 127533523 127533878 -16748611 + (CA)n Simple_repeat Simple_repeat 1 356 0 824 200 88 0 chr12 127533932 127534102 -16748387 + MIR SINE MIR 29 213 -49 715 289 75 9 chr12 127535048 127535276 -16747213 + MIR SINE MIR 13 255 -7 672 230 234 13 chr12 127535461 127535696 -16746793 + MLT1L LTR MaLR 327 613 -2 3408 34 0 0 chr12 127536047 127536430 -16746059 - L1PA4 LINE L1 -3 6152 5770 44624 40 5 2 chr12 127536442 127542582 -16739907 - L1PA3 LINE L1 0 6155 1 545 270 53 0 chr12 127543144 127543296 -16739193 - MIR3 SINE MIR -21 187 28 2260 110 7 3 chr12 127543849 127544150 -16738339 + AluSq SINE Alu 1 302 -11 23 0 0 0 chr12 127544586 127544609 -16737880 + AT_rich Low_complexity Low_complexity 1 23 0 1175 164 23 14 chr12 127544613 127544833 -16737656 - L1MA8 LINE L1 -1 6290 6069 324 0 0 0 chr12 127545226 127545262 -16737227 + (TG)n Simple_repeat Simple_repeat 1 36 0 391 319 0 9 chr12 127545512 127545628 -16736861 - MIR SINE MIR -123 139 25 1599 173 40 4 chr12 127545660 127545938 -16736551 + AluJo SINE Alu 1 288 -24 323 268 8 47 chr12 127545959 127546086 -16736403 - L2 LINE L2 0 3272 3151 222 269 0 0 chr12 127546733 127546785 -16735704 + (CCA)n Simple_repeat Simple_repeat 1 52 0 40035 79 6 6 chr12 127547128 127553280 -16729209 - L1PA6 LINE L1 -4 6150 8 2086 112 4 0 chr12 127553285 127553561 -16728928 - AluSx SINE Alu -18 294 18 1026 278 69 38 chr12 127554085 127554147 -16728342 - MLT1I LTR MaLR 0 409 350 2284 114 0 0 chr12 127554147 127554453 -16728036 + AluSq SINE Alu 1 306 -7 1026 278 69 38 chr12 127554453 127554782 -16727707 - MLT1I LTR MaLR -59 350 6 518 188 0 0 chr12 127554784 127554869 -16727620 - L1ME LINE L1 -500 5621 5537 827 283 87 14 chr12 127554890 127555176 -16727313 - L1ME LINE L1 -303 5818 5512 3374 16 13 0 chr12 127556009 127556381 -16726108 - L1PA4 LINE L1 0 6155 5779 201 278 37 0 chr12 127556571 127556625 -16725864 + (CATG)n Simple_repeat Simple_repeat 1 56 0 269 234 65 0 chr12 127556648 127556725 -16725764 - MLT1L LTR MaLR 0 615 534 831 279 178 31 chr12 127556855 127557311 -16725178 - MLT1L LTR MaLR -76 539 17 237 257 28 111 chr12 127557609 127557699 -16724790 - MIR SINE MIR -129 133 58 2342 103 6 3 chr12 127557699 127558010 -16724479 - AluSx SINE Alu 0 312 1 237 257 28 111 chr12 127558010 127558063 -16724426 - MIR SINE MIR -204 58 2 270 0 0 0 chr12 127558284 127558314 -16724175 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2148 101 10 0 chr12 127558314 127558596 -16723893 - AluSx SINE Alu -27 285 1 24 0 0 0 chr12 127558601 127558625 -16723864 + AT_rich Low_complexity Low_complexity 1 24 0 415 266 84 13 chr12 127559327 127559481 -16723008 + MER20B DNA MER1_type 10 174 -609 863 251 142 38 chr12 127560186 127560821 -16721668 - LTR50 LTR ERVL -6 789 3 301 284 135 83 chr12 127560860 127561244 -16721245 - L2 LINE L2 -31 3282 2879 908 312 52 12 chr12 127561524 127561944 -16720545 + L1ME4a LINE L1 5391 5827 -294 225 259 0 52 chr12 127562499 127562557 -16719932 + MIR SINE MIR 31 85 -177 2138 163 19 4 chr12 127562557 127563021 -16719468 - MLT2B1 LTR ERVL 0 515 1 443 251 86 18 chr12 127563021 127563184 -16719305 + MIR SINE MIR 81 254 -8 180 0 0 0 chr12 127563301 127563321 -16719168 + (GA)n Simple_repeat Simple_repeat 2 21 0 2104 140 38 11 chr12 127563570 127563935 -16718554 - THE1C LTR MaLR 0 375 1 291 54 0 0 chr12 127564182 127564219 -16718270 + (CA)n Simple_repeat Simple_repeat 2 38 0 392 225 26 105 chr12 127564945 127565136 -16717353 - MER91A DNA MER1_type -3 193 18 1655 181 0 19 chr12 127565445 127565765 -16716724 - L1PB4 LINE L1 -2 6154 5841 508 231 10 0 chr12 127566019 127566123 -16716366 + MIR SINE MIR 41 145 -117 312 225 78 78 chr12 127566291 127566433 -16716056 - MIR SINE MIR -52 210 69 605 252 54 29 chr12 127566948 127567200 -16715289 - MLT1H LTR MaLR -280 269 1 515 355 103 1 chr12 127567211 127567657 -16714832 - L2 LINE L2 -220 3052 2563 387 41 0 0 chr12 127567796 127567845 -16714644 + (TTCCC)n Simple_repeat Simple_repeat 3 51 0 719 259 137 4 chr12 127568267 127568553 -16713936 + LTR16A LTR ERVL 8 394 -56 2744 156 18 14 chr12 127568553 127569054 -16713435 - L1MB8 LINE L1 -12 6166 5664 719 259 137 4 chr12 127569054 127569120 -16713369 + LTR16A LTR ERVL 394 450 0 328 318 45 0 chr12 127569124 127569234 -16713255 + L1ME3 LINE L1 5623 5737 -2071 252 273 50 20 chr12 127569257 127569356 -16713133 - MIR3 SINE MIR -92 116 15 546 301 104 42 chr12 127569402 127569711 -16712778 + MER102b DNA MER1_type 1 328 -13 1662 203 21 37 chr12 127569871 127570251 -16712238 - MLT1A2 LTR MaLR 0 374 1 239 238 0 71 chr12 127570339 127570423 -16712066 + LTR67 LTR ERVL 456 533 -24 429 292 103 21 chr12 127570467 127570700 -16711789 + MIR SINE MIR 9 260 -2 2235 105 3 7 chr12 127571616 127571911 -16710578 - AluSx SINE Alu -18 294 1 198 0 0 0 chr12 127572061 127572083 -16710406 + (A)n Simple_repeat Simple_repeat 1 22 0 553 275 175 38 chr12 127572178 127572469 -16710020 - MLT1K LTR MaLR -234 354 24 271 325 14 7 chr12 127572538 127572674 -16709815 - MIR SINE MIR -67 141 23 547 276 104 0 chr12 127572990 127573211 -16709278 + L2 LINE L2 385 628 -2686 729 156 111 49 chr12 127573211 127573436 -16709053 + L2 LINE L2 2289 2527 -787 942 237 55 48 chr12 127573440 127573560 -16708929 + L1ME3 LINE L1 5791 5909 -261 2386 100 0 0 chr12 127573560 127573861 -16708628 + AluSx SINE Alu 1 301 -11 942 237 55 48 chr12 127573861 127574050 -16708439 + L1ME3 LINE L1 5909 6088 -82 1443 182 0 0 chr12 127574050 127574330 -16708159 + L1MA4 LINE L1 6015 6294 -6 942 237 55 48 chr12 127574330 127574411 -16708078 + L1ME3 LINE L1 6088 6167 -3 378 333 26 0 chr12 127574502 127574658 -16707831 + L2 LINE L2 2467 2626 -688 1464 195 141 48 chr12 127574701 127574757 -16707732 + MLT1D LTR MaLR 2 51 -454 1702 201 10 58 chr12 127574757 127575150 -16707339 - MLT1A2 LTR MaLR 0 374 1 1464 195 141 48 chr12 127575150 127575554 -16706935 + MLT1D LTR MaLR 51 505 0 454 314 57 10 chr12 127575555 127575749 -16706740 - L1MC/D LINE L1 -2025 5783 5581 434 311 0 0 chr12 127575800 127575932 -16706557 - MIR SINE MIR -94 168 37 456 333 0 0 chr12 127576043 127576172 -16706317 - L2 LINE L2 -10 3262 3134 187 225 247 34 chr12 127576732 127576821 -16705668 + L2 LINE L2 3200 3307 -6 738 282 40 0 chr12 127577494 127577696 -16704793 - MIR SINE MIR -21 241 32 324 233 113 67 chr12 127577807 127577957 -16704532 - MLT1J LTR MaLR 0 511 355 556 228 122 117 chr12 127578773 127579235 -16703254 + MLT1J LTR MaLR 111 508 -3 205 356 9 17 chr12 127579365 127579480 -16703009 - MIR SINE MIR -5 257 144 323 280 0 0 chr12 127579637 127579730 -16702759 - L1MC4a LINE L1 -1918 5890 5798 441 273 77 26 chr12 127579730 127579924 -16702565 + L3 LINE CR1 1371 1574 -3 2221 117 10 0 chr12 127580069 127580369 -16702120 + AluSx SINE Alu 1 303 -9 1986 188 58 37 chr12 127580547 127581032 -16701457 + MLT1D LTR MaLR 1 495 -10 326 238 12 0 chr12 127581142 127581232 -16701257 + MIR SINE MIR 74 142 -66 349 308 22 60 chr12 127581232 127581417 -16701072 + MER5B DNA MER1_type 1 178 0 618 224 27 14 chr12 127581468 127581615 -16700874 + MER5B DNA MER1_type 26 174 -4 335 311 33 37 chr12 127581699 127581943 -16700546 + MIR SINE MIR 2 244 -18 231 226 43 0 chr12 127582026 127582102 -16700387 + MIR SINE MIR 97 142 -66 1708 251 37 37 chr12 127582468 127583042 -16699447 - MER20B DNA MER1_type -13 770 197 423 149 0 0 chr12 127583583 127583657 -16698832 + (TC)n Simple_repeat Simple_repeat 1 74 0 204 204 102 0 chr12 127583704 127583753 -16698736 - MIR SINE MIR -9 253 200 472 345 48 8 chr12 127583761 127584013 -16698476 + L2 LINE L2 2426 2687 -627 1047 145 79 28 chr12 127584013 127584227 -16698262 - MER96B DNA MER1_type? -182 235 11 1034 252 57 82 chr12 127584227 127584878 -16697611 + L2 LINE L2 2698 3313 0 286 238 96 8 chr12 127584908 127585034 -16697455 - MIR SINE MIR -63 145 21 258 313 30 67 chr12 127585058 127585192 -16697297 + MIR SINE MIR 12 140 -122 1181 258 105 24 chr12 127585222 127585718 -16696771 + L2 LINE L2 2440 2975 -339 1208 93 0 11 chr12 127585773 127585953 -16696536 + (TGG)n Simple_repeat Simple_repeat 1 358 0 1208 93 0 11 chr12 127585953 127586135 -16696354 + (TGG)n Simple_repeat Simple_repeat 1 180 0 1326 78 0 0 chr12 127586194 127586374 -16696115 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 1209 106 0 0 chr12 127586465 127586645 -16695844 + (TGG)n Simple_repeat Simple_repeat 1 180 0 251 315 28 19 chr12 127587180 127587288 -16695201 + L2 LINE L2 2942 3050 -222 877 69 15 8 chr12 127587473 127587603 -16694886 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 2194 107 4 0 chr12 127587607 127587888 -16694601 - AluSx SINE Alu -30 282 1 245 311 23 15 chr12 127587893 127588025 -16694464 + MER5A DNA MER1_type 1 133 -56 237 200 36 18 chr12 127588147 127588202 -16694287 + L2 LINE L2 3124 3179 -93 222 290 72 0 chr12 127588264 127588333 -16694156 - L2 LINE L2 -3 3310 3237 2575 148 14 14 chr12 127588405 127588837 -16693652 - MSTB1 LTR MaLR 0 432 1 388 321 48 84 chr12 127588940 127589382 -16693107 + L2 LINE L2 2808 3233 -39 447 296 45 11 chr12 127589583 127589759 -16692730 + MIR SINE MIR 6 187 -75 414 265 187 30 chr12 127589793 127589959 -16692530 - MIR SINE MIR -70 192 1 224 178 22 0 chr12 127589994 127590039 -16692450 + L2 LINE L2 3251 3296 -17 299 323 23 30 chr12 127590374 127590479 -16692010 - L2 LINE L2 -1 3271 3168 402 308 71 6 chr12 127590479 127590648 -16691841 + MIR SINE MIR 2 181 -81 209 235 0 12 chr12 127590728 127590809 -16691680 + (ATG)n Simple_repeat Simple_repeat 3 82 0 431 269 21 14 chr12 127590861 127591002 -16691487 + MIR SINE MIR 34 175 -87 669 232 49 11 chr12 127591695 127591880 -16690609 - MIR SINE MIR -8 254 63 252 220 0 0 chr12 127592477 127592527 -16689962 + L2 LINE L2 3211 3260 -12 525 262 120 27 chr12 127592920 127593145 -16689344 - MIR SINE MIR 0 262 17 23 33 0 0 chr12 127593628 127593658 -16688831 + AT_rich Low_complexity Low_complexity 1 30 0 427 151 179 9 chr12 127594220 127594326 -16688163 + MER117 DNA MER1_type 72 195 -2 240 350 108 19 chr12 127594961 127595118 -16687371 - L2 LINE L2 0 3272 3102 484 247 113 38 chr12 127595171 127595357 -16687132 - MIR SINE MIR 0 262 63 383 230 50 72 chr12 127595358 127595497 -16686992 - MLT1-int LTR MaLR -208 1163 1028 1798 80 9 4 chr12 127595564 127595789 -16686700 - AluSg/x SINE Alu -11 299 74 239 174 379 38 chr12 127596785 127596917 -16685572 + MLT1L LTR MaLR 439 615 0 595 271 131 9 chr12 127597056 127597270 -16685219 + MIR SINE MIR 13 252 -10 328 145 121 36 chr12 127597334 127597417 -16685072 - MER103 DNA DNA -18 148 59 474 230 151 7 chr12 127597509 127597648 -16684841 + MER5A DNA MER1_type 31 189 0 3023 106 12 7 chr12 127598292 127598718 -16683771 + MSTA LTR MaLR 1 428 0 1073 91 0 32 chr12 127598876 127599062 -16683427 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 908 101 0 7 chr12 127599072 127599211 -16683278 + (TTCCC)n Simple_repeat Simple_repeat 4 141 0 1630 168 45 0 chr12 127599214 127599482 -16683007 - AluJb SINE Alu -32 280 1 356 253 29 106 chr12 127600306 127600476 -16682013 - L2 LINE L2 -2 3311 3155 521 92 126 0 chr12 127600701 127600788 -16681701 - L1PA10 LINE L1 0 6168 6071 537 249 98 0 chr12 127601735 127601908 -16680581 - MIR SINE MIR 0 262 73 1259 246 70 42 chr12 127601930 127602166 -16680323 - LTR16C LTR ERVL -6 485 232 2321 130 28 102 chr12 127602166 127602635 -16679854 + Tigger2a DNA MER2_type 1 434 0 1259 246 70 42 chr12 127602635 127602800 -16679689 - LTR16C LTR ERVL -259 232 73 562 291 70 9 chr12 127602800 127603013 -16679476 + MIR SINE MIR 23 248 -14 180 250 0 0 chr12 127603320 127603360 -16679129 - MIR SINE MIR -191 71 32 233 267 117 0 chr12 127603509 127603629 -16678860 + Tigger2 DNA MER2_type 2581 2714 -4 264 271 45 60 chr12 127603655 127603788 -16678701 - LTR16C LTR ERVL -288 203 73 478 303 81 9 chr12 127603788 127603999 -16678490 + MIR SINE MIR 23 248 -14 213 318 15 0 chr12 127604305 127604371 -16678118 - MIR SINE MIR -191 71 5 552 270 25 13 chr12 127604796 127604977 -16677512 - MIR SINE MIR -51 157 23 2154 130 0 0 chr12 127605232 127605524 -16676965 + AluSx SINE Alu 3 294 -18 2302 201 14 2 chr12 127605524 127605962 -16676527 + MER74C LTR ERVL 13 455 -5 299 250 12 12 chr12 127605969 127606053 -16676436 + MIR SINE MIR 47 130 -78 2206 121 0 0 chr12 127606095 127606384 -16676105 - AluSx SINE Alu -23 289 1 544 301 55 18 chr12 127607574 127607793 -16674696 - MIR SINE MIR -34 228 2 189 209 0 23 chr12 127607804 127607847 -16674642 - MIR SINE MIR -63 145 104 1854 133 7 43 chr12 127607886 127608187 -16674302 - AluJb SINE Alu -22 290 1 371 271 199 0 chr12 127608199 127608350 -16674139 + MIR SINE MIR 72 252 -10 353 291 81 66 chr12 127608378 127608636 -16673853 - MLT1J LTR MaLR -4 507 246 197 229 188 62 chr12 127608894 127608990 -16673499 - MIR SINE MIR -79 129 22 1587 139 64 46 chr12 127609459 127609759 -16672730 - AluJb SINE Alu 0 305 1 1401 212 124 31 chr12 127610472 127610948 -16671541 - MLT2B1 LTR ERVL 0 520 1 238 238 10 79 chr12 127610993 127611094 -16671395 + MIR SINE MIR 113 206 -56 2146 145 18 0 chr12 127611237 127611568 -16670921 + MER1B DNA MER1_type 1 337 0 394 275 69 15 chr12 127611713 127611844 -16670645 + MLT1J2 LTR MaLR 1 138 -312 1460 145 25 0 chr12 127611876 127611929 -16670560 + MER50 LTR ERV1 1 51 -683 468 0 0 0 chr12 127611929 127611981 -16670508 + (CA)n Simple_repeat Simple_repeat 2 53 0 1460 145 25 0 chr12 127611981 127612169 -16670320 + MER50 LTR ERV1 51 248 -486 * 1996 115 3 102 chr12 127612163 127612228 -16670261 + MER50 LTR ERV1 397 467 -267 2462 80 0 0 chr12 127612228 127612528 -16669961 + AluY SINE Alu 1 300 -11 1996 115 3 102 chr12 127612528 127612836 -16669653 + MER50 LTR ERV1 467 733 -1 596 256 27 28 chr12 127612863 127613050 -16669439 + MLT1J2 LTR MaLR 277 433 -17 195 69 0 0 chr12 127613343 127613372 -16669117 + (A)n Simple_repeat Simple_repeat 1 29 0 2012 106 0 3 chr12 127614565 127614847 -16667642 + AluSx SINE Alu 1 281 -31 391 261 80 106 chr12 127615068 127615256 -16667233 + MER5A DNA MER1_type 1 183 -6 180 0 0 0 chr12 127615257 127615277 -16667212 + (T)n Simple_repeat Simple_repeat 1 20 0 2158 166 85 2 chr12 127615349 127615434 -16667055 + L1MB5 LINE L1 5705 5782 -392 1739 149 0 4 chr12 127615434 127615709 -16666780 + AluJb SINE Alu 1 274 -38 2158 166 85 2 chr12 127615709 127616057 -16666432 + L1MB5 LINE L1 5782 6174 0 363 351 0 27 chr12 127616074 127616222 -16666267 - MER5B DNA MER1_type -30 148 5 1802 147 7 14 chr12 127616269 127616562 -16665927 + AluJo SINE Alu 5 295 -17 1410 172 60 94 chr12 127616643 127617027 -16665462 + MLT1A2 LTR MaLR 4 374 0 214 259 69 0 chr12 127617990 127618048 -16664441 + L2 LINE L2 3137 3198 -74 540 272 62 58 chr12 127618180 127618404 -16664085 - MIR SINE MIR -15 247 23 180 225 288 25 chr12 127618485 127618565 -16663924 - L2 LINE L2 0 3272 3172 255 273 39 0 chr12 127618894 127618971 -16663518 + MLT1K LTR MaLR 509 588 0 369 258 61 15 chr12 127619004 127619136 -16663353 - L2 LINE L2 -194 3078 2941 521 329 65 6 chr12 127619177 127619347 -16663142 - MIR SINE MIR -71 191 12 321 68 0 0 chr12 127619756 127619800 -16662689 + (TG)n Simple_repeat Simple_repeat 1 44 0 1663 141 0 8 chr12 127620041 127620303 -16662186 + AluSx SINE Alu 35 294 -18 627 130 0 10 chr12 127620364 127620464 -16662025 + L1PB1 LINE L1 6053 6151 0 540 177 10 10 chr12 127620543 127620639 -16661850 - L2 LINE L2 -9 3304 3209 * 1281 252 95 38 chr12 127620636 127621158 -16661331 + L2 LINE L2 2763 3313 0 279 301 69 20 chr12 127621173 127621427 -16661062 - L1MC/D LINE L1 -754 5392 5204 358 268 38 75 chr12 127621486 127621699 -16660790 - L2 LINE L2 -90 3223 3019 249 297 44 44 chr12 127622038 127622129 -16660360 - MLT1K LTR MaLR -381 207 117 252 143 0 0 chr12 127622221 127622263 -16660226 + (CA)n Simple_repeat Simple_repeat 1 42 0 2330 127 28 0 chr12 127622674 127623028 -16659461 + THE1B LTR MaLR 1 364 0 238 323 147 37 chr12 127623040 127623340 -16659149 - L2 LINE L2 -60 3253 2921 450 307 36 127 chr12 127623416 127624241 -16658248 - L2 LINE L2 -400 2914 2165 694 265 74 26 chr12 127625556 127625793 -16656696 - MIR SINE MIR -2 260 19 641 195 67 5 chr12 127625986 127626181 -16656308 - L1ME4a LINE L1 -1 6120 5914 417 194 59 83 chr12 127626185 127626522 -16655967 - L1P4 LINE L1 -538 5583 5266 1709 107 118 7 chr12 127626736 127627006 -16655483 + AluSg1 SINE Alu 1 300 -9 382 203 0 13 chr12 127627184 127627263 -16655226 - MIR SINE MIR -105 157 80 198 0 0 0 chr12 127627330 127627352 -16655137 + (TCCA)n Simple_repeat Simple_repeat 2 23 0 2328 144 42 37 chr12 127627489 127627920 -16654569 - Tigger2a DNA MER2_type 0 434 2 477 235 22 52 chr12 127628173 127628211 -16654278 - MIR SINE MIR -70 192 154 4363 74 5 0 chr12 127628211 127628762 -16653727 - MER41A LTR ERV1 0 554 1 477 235 22 52 chr12 127628762 127628859 -16653630 - MIR SINE MIR -108 154 61 253 178 0 0 chr12 127629769 127629814 -16652675 + MER3 DNA MER1_type 2 46 -163 270 299 61 48 chr12 127630426 127630573 -16651916 + MIR SINE MIR 1 149 -113 245 176 20 20 chr12 127630577 127630628 -16651861 + MLT1L LTR MaLR 1 51 -564 351 217 29 0 chr12 127630661 127630730 -16651759 + MLT1J2 LTR MaLR 60 130 -320 * 944 285 81 43 chr12 127630702 127631098 -16651391 + MLT1L LTR MaLR 205 615 0 343 346 0 66 chr12 127631322 127631504 -16650985 - MIR3 SINE MIR -6 202 33 196 289 0 0 chr12 127631794 127631846 -16650643 - L2 LINE L2 0 3313 3262 1918 132 0 3 chr12 127631876 127632164 -16650325 + AluSx SINE Alu 1 287 -25 279 0 0 0 chr12 127632167 127632198 -16650291 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 1887 113 33 0 chr12 127632198 127632510 -16649979 + AluSx SINE Alu 1 321 0 423 293 221 6 chr12 127632938 127633119 -16649370 + MIR SINE MIR 13 232 -30 1170 266 83 20 chr12 127633121 127633471 -16649018 - LTR16C LTR ERVL -29 462 91 312 220 30 80 chr12 127633497 127633597 -16648892 + MIR SINE MIR 22 116 -146 276 247 82 0 chr12 127633604 127633677 -16648812 + MER5A DNA MER1_type 13 91 -98 426 131 12 48 chr12 127633677 127633761 -16648728 - MLT1F1 LTR MaLR 0 567 487 784 246 0 31 chr12 127634237 127634428 -16648061 - MIR SINE MIR -19 243 59 2462 119 62 36 chr12 127634564 127634985 -16647504 - MSTB1 LTR MaLR 0 432 1 1558 261 90 22 chr12 127635050 127635764 -16646725 - L2 LINE L2 0 3313 2536 589 213 12 0 chr12 127636449 127636613 -16645876 + GA-rich Low_complexity Low_complexity 2 167 0 1565 145 0 0 chr12 127636619 127636854 -16645635 + AluSx SINE Alu 1 235 -77 222 118 0 0 chr12 127636881 127636915 -16645574 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1101 53 0 53 chr12 127637023 127637213 -16645276 + (TC)n Simple_repeat Simple_repeat 1 180 0 1447 172 22 0 chr12 127637277 127637545 -16644944 - AluSx SINE Alu -38 274 1 508 287 33 99 chr12 127637548 127637882 -16644607 - L2 LINE L2 -3 3310 2999 870 298 9 4 chr12 127638246 127638474 -16644015 + MIR SINE MIR 15 243 -19 416 309 51 28 chr12 127638592 127638770 -16643719 + MER5A DNA MER1_type 7 188 -1 660 271 11 28 chr12 127638777 127638958 -16643531 + MIR SINE MIR 3 180 -82 273 156 28 28 chr12 127638958 127639067 -16643422 + (TA)n Simple_repeat Simple_repeat 2 110 0 256 180 20 0 chr12 127639708 127639758 -16642731 + MIR SINE MIR 78 128 -80 459 252 58 73 chr12 127639770 127639976 -16642513 + MIR SINE MIR 1 203 -59 715 273 51 28 chr12 127640261 127640514 -16641975 + MIR SINE MIR 4 262 0 275 306 14 90 chr12 127640676 127640820 -16641669 + MIR SINE MIR 80 212 -50 1099 251 73 88 chr12 127641215 127641472 -16641017 - LTR33 LTR ERVL -8 513 267 2036 114 17 0 chr12 127641472 127641769 -16640720 + AluSx SINE Alu 3 304 -8 1099 251 73 88 chr12 127641769 127642032 -16640457 - LTR33 LTR ERVL -254 267 1 699 253 129 21 chr12 127642362 127642595 -16639894 + MIR SINE MIR 5 262 0 455 254 8 54 chr12 127642992 127643122 -16639367 - MIR SINE MIR -109 153 30 393 276 177 36 chr12 127643132 127643557 -16638932 - MLT1L LTR MaLR 0 615 113 459 294 145 9 chr12 127643791 127644012 -16638477 + MIR SINE MIR 12 262 0 315 259 35 69 chr12 127644564 127644680 -16637809 + MIR SINE MIR 28 139 -69 247 301 117 29 chr12 127644679 127644782 -16637707 + MIR SINE MIR 11 122 -140 * 855 154 44 0 chr12 127644801 127644937 -16637552 - MLT1D LTR MaLR -363 142 1 550 202 289 14 chr12 127644937 127645145 -16637344 + L1ME3A LINE L1 5904 6168 -2 509 255 107 38 chr12 127645622 127645847 -16636642 - MIR SINE MIR -12 250 16 222 189 0 0 chr12 127646386 127646423 -16636066 - MER5B DNA MER1_type -98 80 44 457 69 0 0 chr12 127646558 127646616 -16635873 - Alu SINE Alu -257 61 4 2098 103 3 3 chr12 127646932 127647223 -16635266 + AluSc SINE Alu 1 291 -18 1058 234 14 0 chr12 127647463 127647672 -16634817 - MER58A DNA MER1_type -12 212 1 2237 107 3 0 chr12 127648072 127648382 -16634107 - AluSq SINE Alu -2 311 1 189 0 0 0 chr12 127648648 127648669 -16633820 + (TG)n Simple_repeat Simple_repeat 2 22 0 621 312 84 15 chr12 127649417 127649753 -16632736 - LTR16C LTR ERVL 0 491 96 224 288 160 71 chr12 127649955 127650287 -16632202 + L2 LINE L2 2011 2391 -923 458 210 191 6 chr12 127650287 127650444 -16632045 + MER5A DNA MER1_type 4 189 0 224 288 160 71 chr12 127650444 127650535 -16631954 + L2 LINE L2 2391 2472 -842 475 313 153 27 chr12 127650676 127650970 -16631519 - L2 LINE L2 -5 3267 2937 1186 247 93 45 chr12 127651224 127651665 -16630824 + MLT1C LTR MaLR 6 467 0 254 250 0 16 chr12 127651730 127651794 -16630695 - MIR SINE MIR -102 160 98 1587 216 70 31 chr12 127651953 127652021 -16630468 + MLT1C LTR MaLR 6 70 -397 4380 160 55 14 chr12 127652021 127652814 -16629675 - LTR1B LTR ERV1 0 826 1 1587 216 70 31 chr12 127652814 127653189 -16629300 + MLT1C LTR MaLR 70 466 -1 512 109 18 18 chr12 127654074 127654184 -16628305 + (GA)n Simple_repeat Simple_repeat 2 111 0 285 309 73 9 chr12 127654243 127654353 -16628136 - L2 LINE L2 -15 3257 3141 433 289 67 26 chr12 127654706 127654858 -16627631 - MIR3 SINE MIR -56 152 14 183 242 0 97 chr12 127655355 127655417 -16627072 + MIR SINE MIR 128 183 -79 317 332 47 72 chr12 127655682 127655917 -16626572 - L2 LINE L2 0 3272 3044 342 222 202 20 chr12 127655917 127656016 -16626473 - LTR32 LTR ERVL 0 471 355 1110 254 39 38 chr12 127656018 127656498 -16625991 - L1MC5 LINE L1 -892 6916 6407 387 298 141 11 chr12 127656543 127656734 -16625755 - MIR SINE MIR -13 249 34 204 125 0 0 chr12 127656877 127656909 -16625580 + (GA)n Simple_repeat Simple_repeat 1 32 0 190 358 99 19 chr12 127657173 127657335 -16625154 + L2 LINE L2 2913 3087 -185 1701 235 67 2 chr12 127657344 127657778 -16624711 + MLT1C LTR MaLR 6 467 0 657 254 121 13 chr12 127658909 127659141 -16623348 + MIR SINE MIR 1 257 -5 2772 58 0 0 chr12 127659160 127659502 -16622987 + L1PA5 LINE L1 5811 6152 -2 23 54 0 0 chr12 127659614 127659651 -16622838 + AT_rich Low_complexity Low_complexity 1 37 0 499 288 61 7 chr12 127659696 127659891 -16622598 + MIR SINE MIR 6 212 -50 605 231 108 9 chr12 127659905 127660092 -16622397 + MIR SINE MIR 60 253 -9 411 297 126 6 chr12 127660105 127660280 -16622209 - MIR SINE MIR -2 260 65 705 228 31 25 chr12 127660893 127661055 -16621434 + MER63A DNA MER1_type 48 210 0 429 256 0 0 chr12 127661096 127661186 -16621303 + MIR SINE MIR 46 135 -127 861 283 44 60 chr12 127661186 127661599 -16620890 - MLT1I LTR MaLR 0 409 4 370 289 112 37 chr12 127661743 127661930 -16620559 - MIR3 SINE MIR -6 202 2 566 288 85 76 chr12 127662205 127662628 -16619861 - MLT1K LTR MaLR 0 588 162 2717 174 31 6 chr12 127662984 127663502 -16618987 + MER74A LTR ERVL 1 531 -27 1570 261 53 22 chr12 127663988 127664478 -16618011 - LTR33 LTR ERVL 0 521 17 1738 209 122 21 chr12 127665294 127665776 -16616713 + MLT1F LTR MaLR 12 542 0 348 307 114 18 chr12 127665855 127665969 -16616520 - L2 LINE L2 0 3272 3148 699 305 46 25 chr12 127665988 127666227 -16616262 + MIR SINE MIR 6 249 -13 324 237 110 18 chr12 127666248 127666401 -16616088 - MIR SINE MIR -63 145 18 3591 166 13 10 chr12 127666545 127667231 -16615258 - L1MC3 LINE L1 -12 7773 7086 316 292 106 26 chr12 127667675 127667788 -16614701 + L1ME LINE L1 5413 5534 -587 377 313 52 13 chr12 127667792 127668025 -16614464 + L1ME LINE L1 5568 5809 -312 931 269 137 28 chr12 127668084 127668273 -16614216 + LTR16C LTR ERVL 14 181 -310 1059 169 77 24 chr12 127668273 127668480 -16614009 + MER20 DNA MER1_type 1 218 -1 931 269 137 28 chr12 127668480 127668721 -16613768 + LTR16C LTR ERVL 181 491 0 216 0 0 0 chr12 127668811 127668835 -16613654 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 288 170 0 0 chr12 127668898 127668951 -16613538 + T-rich Low_complexity Low_complexity 3 55 0 736 283 36 28 chr12 127669356 127669607 -16612882 - MIR SINE MIR -4 258 6 850 256 31 70 chr12 127669678 127669936 -16612553 + MIR SINE MIR 2 249 -13 791 209 16 32 chr12 127670016 127670203 -16612286 + MIR SINE MIR 28 211 -51 695 245 53 16 chr12 127670193 127670381 -16612108 - MIR SINE MIR -35 227 33 * 180 0 0 0 chr12 127670837 127670857 -16611632 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 306 0 0 0 chr12 127670856 127670890 -16611599 + (CA)n Simple_repeat Simple_repeat 1 34 0 280 189 67 67 chr12 127670920 127671010 -16611479 + MER112 DNA MER1_type 161 250 -10 1036 311 95 16 chr12 127671180 127671633 -16610856 + L2 LINE L2 2818 3306 -7 721 168 27 7 chr12 127671735 127671884 -16610605 - L1MB8 LINE L1 -6 6172 6021 2532 115 37 88 chr12 127671891 127672438 -16610051 - L1MA8 LINE L1 -4 6287 5769 13035 98 3 6 chr12 127672438 127675135 -16607354 - L1PA8 LINE L1 0 6172 3465 28650 119 13 62 chr12 127675235 127681028 -16601461 - L1PA8 LINE L1 -294 5878 413 261 0 0 0 chr12 127681028 127681057 -16601432 + (CAA)n Simple_repeat Simple_repeat 2 30 0 28650 119 13 62 chr12 127681057 127681441 -16601048 - L1PA8 LINE L1 -5759 413 12 2857 124 40 2 chr12 127681448 127682182 -16600307 - L1MA8 LINE L1 -506 5785 5027 11150 218 42 7 chr12 127682182 127686067 -16596422 - L1MB7 LINE L1 -149 6104 2132 5644 131 21 3 chr12 127686094 127686560 -16595929 - L1PA15 LINE L1 0 6165 5709 2104 134 0 0 chr12 127686560 127686851 -16595638 + AluSx SINE Alu 1 291 -21 5644 131 21 3 chr12 127686851 127688146 -16594343 - L1PA15 LINE L1 -456 5709 4392 228 86 0 0 chr12 127688146 127688181 -16594308 + (TG)n Simple_repeat Simple_repeat 2 36 0 5644 131 21 3 chr12 127688181 127688275 -16594214 - L1PA15 LINE L1 -1773 4392 4301 6826 164 20 49 chr12 127688283 127690656 -16591833 - L1MA1 LINE L1 -109 6193 3935 1439 192 0 82 chr12 127690656 127690973 -16591516 + AluJb SINE Alu 3 293 -19 6826 164 20 49 chr12 127690973 127691674 -16590815 - L1MA1 LINE L1 -2367 3935 3215 1488 93 0 0 chr12 127692098 127692302 -16590187 - L1PA13 LINE L1 -4 6159 5956 2243 205 41 13 chr12 127692344 127692682 -16589807 - L1ME3 LINE L1 -91 6071 5744 2018 138 30 46 chr12 127692682 127692961 -16589528 - THE1B LTR MaLR 0 364 91 1869 110 0 37 chr12 127692961 127693233 -16589256 + AluSq SINE Alu 40 301 -12 2018 138 30 46 chr12 127693233 127693323 -16589166 - THE1B LTR MaLR -273 91 1 2243 205 41 13 chr12 127693323 127693834 -16588655 - L1ME3 LINE L1 -418 5744 5129 254 263 40 0 chr12 127693852 127693928 -16588561 + MLT1C LTR MaLR 389 467 0 801 199 93 4 chr12 127693949 127694175 -16588314 - L1ME3 LINE L1 -1496 4650 4405 26 30 0 0 chr12 127694296 127694329 -16588160 + AT_rich Low_complexity Low_complexity 1 33 0 435 202 80 32 chr12 127694343 127694531 -16587958 - L1ME3 LINE L1 -1742 4404 4208 191 353 20 29 chr12 127694574 127694676 -16587813 + MIR3 SINE MIR 77 177 -31 456 262 47 40 chr12 127694676 127694825 -16587664 + MIR SINE MIR 32 181 -81 514 295 40 0 chr12 127694990 127695139 -16587350 - MER5A DNA MER1_type 0 189 35 1652 118 24 10 chr12 127695144 127695432 -16587057 - THE1A LTR MaLR -60 295 4 236 258 136 0 chr12 127696307 127696373 -16586116 - L2 LINE L2 -5 3308 3234 394 321 145 32 chr12 127696745 127696994 -16585495 - L2 LINE L2 -2 3270 2994 278 237 93 0 chr12 127697422 127697519 -16584970 - Charlie8 DNA MER1_type -2251 166 61 192 274 39 0 chr12 127698311 127698362 -16584127 + L3 LINE CR1 1498 1550 -27 249 316 42 21 chr12 127698533 127698628 -16583861 - MER5A DNA MER1_type -1 188 92 945 298 50 48 chr12 127698791 127699311 -16583178 + MLT1G1 LTR MaLR 75 595 0 349 310 68 0 chr12 127699496 127699656 -16582833 - MLT1J2 LTR MaLR -297 188 10 436 332 89 14 chr12 127699735 127699949 -16582540 + MIR SINE MIR 8 237 -25 206 182 0 23 chr12 127699951 127699995 -16582494 + A-rich Low_complexity Low_complexity 6 48 0 380 290 129 0 chr12 127700082 127700206 -16582283 - MIR SINE MIR -75 187 48 215 269 0 75 chr12 127700607 127700674 -16581815 + MIR SINE MIR 110 171 -91 1643 192 10 0 chr12 127700957 127701248 -16581241 + AluJo SINE Alu 1 294 -18 196 238 0 0 chr12 127701250 127701292 -16581197 + MIR SINE MIR 202 243 -19 1227 275 40 28 chr12 127701512 127701774 -16580715 - L1M4 LINE L1 -1039 5107 4850 2062 154 0 0 chr12 127701774 127702079 -16580410 + AluJb SINE Alu 1 305 -7 1227 275 40 28 chr12 127702079 127702384 -16580105 - L1M4 LINE L1 -1296 4850 4533 251 209 12 116 chr12 127702386 127702472 -16580017 - MIR SINE MIR -82 180 104 500 216 11 102 chr12 127702523 127702630 -16579859 - MER97c DNA MER1_type? -911 179 93 1926 167 0 3 chr12 127702630 127702941 -16579548 - AluJo SINE Alu -2 310 1 500 216 11 102 chr12 127702941 127703009 -16579480 - MER97c DNA MER1_type? -997 93 20 245 150 0 0 chr12 127703171 127703211 -16579278 + LTR55 LTR ERV 1 40 -508 1665 182 127 24 chr12 127703211 127703677 -16578812 + LTR55 LTR ERV 16 529 -19 3572 124 54 5 chr12 127703789 127704363 -16578126 - MER44D DNA MER2_type 0 605 132 303 173 0 0 chr12 127705462 127705514 -16576975 + L1MC4 LINE L1 6652 6703 -1339 396 167 0 0 chr12 127705521 127705593 -16576896 + (TA)n Simple_repeat Simple_repeat 1 72 0 325 249 0 10 chr12 127705624 127705726 -16576763 + L1MC4 LINE L1 1995 6983 -1339 1426 197 118 11 chr12 127705727 127706107 -16576382 + MLT1C LTR MaLR 45 465 -2 262 304 14 0 chr12 127706109 127706178 -16576311 - L2 LINE L2 -852 2462 2393 645 221 6 35 chr12 127706268 127706440 -16576049 - MER20 DNA MER1_type 0 219 53 2791 6 0 16 chr12 127706440 127706753 -16575736 + AluYb8 SINE Alu 1 308 -10 1676 162 39 84 chr12 127706782 127706944 -16575545 - MLT1A1 LTR MaLR 0 365 197 1664 172 0 4 chr12 127706944 127707211 -16575278 - AluJo SINE Alu -27 285 20 1676 162 39 84 chr12 127707211 127707430 -16575059 - MLT1A1 LTR MaLR -168 197 1 1878 151 17 0 chr12 127707482 127707780 -16574709 + AluSx SINE Alu 1 303 -9 994 84 22 22 chr12 127707785 127707963 -16574526 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 351 225 11 34 chr12 127708093 127708182 -16574307 + L2 LINE L2 3161 3247 -66 25 31 0 0 chr12 127708380 127708412 -16574077 + AT_rich Low_complexity Low_complexity 1 32 0 754 157 8 30 chr12 127708529 127708663 -16573826 + FLAM_C SINE Alu 1 131 -12 404 308 99 14 chr12 127708810 127709031 -16573458 + MIR SINE MIR 23 262 0 570 281 32 24 chr12 127709056 127709330 -16573159 - L1MC/D LINE L1 -357 5764 5524 1935 140 15 0 chr12 127710564 127710859 -16571630 - AluSg SINE Alu 0 304 6 223 290 143 2 chr12 127711049 127711146 -16571343 + MIR SINE MIR 36 143 -65 354 280 28 0 chr12 127711261 127711368 -16571121 - MIR SINE MIR -6 256 147 304 318 75 0 chr12 127711465 127711572 -16570917 - L2 LINE L2 0 3313 3199 651 111 0 0 chr12 127711579 127711669 -16570820 + 5S rRNA rRNA 1 90 -31 236 311 40 47 chr12 127711804 127711952 -16570537 - L2 LINE L2 -233 3039 2893 1772 168 42 8 chr12 127712959 127713317 -16569172 - L1MB3 LINE L1 -2 6181 5812 324 70 0 0 chr12 127713480 127713523 -16568966 + (CA)n Simple_repeat Simple_repeat 2 44 0 1493 153 37 0 chr12 127713523 127713791 -16568698 - L1MB3 LINE L1 -378 5793 5516 288 297 8 17 chr12 127714212 127714330 -16568159 - L1MEd LINE L1 -5555 564 448 1469 126 14 10 chr12 127714368 127714575 -16567914 - AluJo SINE Alu -20 292 85 1169 282 31 16 chr12 127714660 127715047 -16567442 + LTR16C LTR ERVL 97 489 -2 397 373 28 51 chr12 127715103 127715358 -16567131 - L1MEd LINE L1 -5768 351 103 1261 216 40 123 chr12 127715467 127716077 -16566412 - L2 LINE L2 -52 3261 2711 3105 159 15 9 chr12 127716077 127716611 -16565878 + L1PB4 LINE L1 5617 6153 -3 1276 152 28 48 chr12 127716613 127716863 -16565626 + AluJo SINE Alu 65 309 -3 1184 314 97 33 chr12 127716880 127717704 -16564785 - L2 LINE L2 -104 3168 2213 247 232 101 20 chr12 127718288 127718387 -16564102 + MIR SINE MIR 45 151 -57 730 289 59 56 chr12 127718387 127718680 -16563809 + L1M4 LINE L1 3373 3669 -2477 2418 75 14 0 chr12 127718680 127718973 -16563516 - AluY SINE Alu -14 297 1 730 289 59 56 chr12 127718973 127719088 -16563401 + L1M4 LINE L1 3669 3782 -2364 447 225 124 8 chr12 127719137 127719266 -16563223 - MER117 DNA MER1_type -49 148 5 221 320 33 33 chr12 127719447 127719569 -16562920 + L2 LINE L2 3192 3313 0 746 306 122 38 chr12 127719704 127720727 -16561762 + L2 LINE L2 2214 3307 -6 216 0 0 0 chr12 127720731 127720755 -16561734 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 880 197 82 0 chr12 127720785 127720968 -16561521 - MER20 DNA MER1_type -1 218 21 562 144 154 0 chr12 127721004 127721108 -16561381 - MER20 DNA MER1_type -24 195 76 415 293 71 74 chr12 127721224 127721507 -16560982 + MLT1I LTR MaLR 110 391 -18 303 322 25 0 chr12 127721796 127721914 -16560575 + L2 LINE L2 3193 3313 0 370 194 97 103 chr12 127722019 127722202 -16560287 + MLT1J2 LTR MaLR 185 340 -69 1120 138 81 48 chr12 127722202 127722412 -16560077 + MER20 DNA MER1_type 2 218 -1 370 194 97 103 chr12 127722412 127722478 -16560011 + MLT1J2 LTR MaLR 340 405 -4 960 194 65 37 chr12 127722709 127722926 -16559563 + MER58A DNA MER1_type 2 224 0 654 270 85 0 chr12 127722932 127723132 -16559357 + MIR SINE MIR 46 262 0 203 286 88 0 chr12 127723752 127723843 -16558646 - MIR SINE MIR -70 192 94 386 219 61 18 chr12 127723953 127724067 -16558422 + L2 LINE L2 3195 3313 0 183 354 94 0 chr12 127724072 127724168 -16558321 + L2 LINE L2 2928 3032 -240 375 226 212 7 chr12 127724172 127724309 -16558180 - LTR33A LTR ERVL -4 519 404 1770 265 69 22 chr12 127724312 127724816 -16557673 - MLT1E LTR MaLR 0 593 66 7413 173 154 25 chr12 127724816 127726370 -16556119 + MER52A LTR ERV1 1 1755 0 271 294 0 0 chr12 127726372 127726440 -16556049 - MLT1E LTR MaLR -474 68 1 538 224 75 5 chr12 127726441 127726646 -16555843 - LTR50 LTR ERVL -168 627 328 239 236 170 44 chr12 127726678 127726709 -16555780 - LTR50 LTR ERVL -589 206 180 2664 143 42 7 chr12 127726709 127727158 -16555331 + MLT1C LTR MaLR 3 467 0 239 236 170 44 chr12 127727158 127727308 -16555181 - LTR50 LTR ERVL -615 180 2 535 263 15 0 chr12 127727424 127727557 -16554932 + L2 LINE L2 3178 3312 -1 556 289 19 19 chr12 127727625 127727784 -16554705 - MIR SINE MIR -53 209 51 317 321 66 29 chr12 127728246 127728383 -16554106 - L2 LINE L2 -4 3268 3127 394 205 0 0 chr12 127728570 127728648 -16553841 - MIR SINE MIR -114 148 71 2054 57 14 21 chr12 127728729 127728978 -16553511 - L1MA2 LINE L1 0 6304 6056 2137 122 10 0 chr12 127728978 127729272 -16553217 - AluSp SINE Alu -16 297 1 2054 57 14 21 chr12 127729272 127729301 -16553188 - L1MA2 LINE L1 -248 6056 6028 344 300 23 15 chr12 127729370 127729500 -16552989 - L2 LINE L2 -208 3064 2934 243 296 197 0 chr12 127730140 127730272 -16552217 + MIR SINE MIR 105 262 0 1185 266 52 56 chr12 127730313 127730756 -16551733 - LTR16A1 LTR ERVL -2 455 15 513 282 21 0 chr12 127731416 127731558 -16550931 - MIR SINE MIR -115 147 3 267 54 0 0 chr12 127731579 127731616 -16550873 - L1MA3 LINE L1 0 6305 6269 527 341 41 0 chr12 127731621 127731841 -16550648 + L2 LINE L2 2430 2658 -656 274 192 0 0 chr12 127731860 127731912 -16550577 + L2 LINE L2 3258 3309 -4 367 307 12 94 chr12 127732159 127732403 -16550086 + L2 LINE L2 2868 3091 -181 34 65 0 0 chr12 127732556 127732618 -16549871 + AT_rich Low_complexity Low_complexity 1 62 0 736 159 0 45 chr12 127732620 127732752 -16549737 - FLAM_C SINE Alu -7 126 1 201 94 0 0 chr12 127734030 127734062 -16548427 + (TG)n Simple_repeat Simple_repeat 1 32 0 316 40 40 0 chr12 127734062 127734112 -16548377 + (GA)n Simple_repeat Simple_repeat 2 53 0 445 293 53 22 chr12 127734178 127734403 -16548086 - MIR SINE MIR -28 234 3 415 236 89 8 chr12 127734505 127734628 -16547861 + MIR SINE MIR 68 200 -62 255 152 0 0 chr12 127734628 127734674 -16547815 + GA-rich Low_complexity Low_complexity 1 46 0 294 309 0 10 chr12 127734713 127734810 -16547679 - MIR SINE MIR -14 248 153 270 298 125 88 chr12 127734826 127735145 -16547344 - L2 LINE L2 -2 3270 2940 274 254 99 42 chr12 127735403 127735461 -16547028 + MER117 DNA MER1_type 1 54 -143 2601 96 25 0 chr12 127735461 127735816 -16546673 + THE1B LTR MaLR 1 364 0 274 254 99 42 chr12 127735816 127735899 -16546590 + MER117 DNA MER1_type 54 150 -47 1207 230 72 0 chr12 127736456 127736721 -16545768 + AluJb SINE Alu 1 284 -28 536 29 14 0 chr12 127736721 127736791 -16545698 + (GA)n Simple_repeat Simple_repeat 2 72 0 249 103 0 0 chr12 127736976 127737018 -16545471 - MIR SINE MIR -59 149 114 227 263 105 53 chr12 127737695 127737847 -16544642 - MIR SINE MIR -56 206 47 319 283 69 7 chr12 127737931 127738076 -16544413 - L1ME4a LINE L1 -6 6115 5962 283 277 55 79 chr12 127738301 127738554 -16543935 - L2 LINE L2 -2 3311 3065 4804 138 19 1 chr12 127738570 127739350 -16543139 - L1MA5 LINE L1 -2 6298 5505 1179 310 75 28 chr12 127739484 127740071 -16542418 - L2 LINE L2 -446 2868 2246 1530 220 7 0 chr12 127740071 127740366 -16542123 + AluJo SINE Alu 1 297 -15 1179 310 75 28 chr12 127740366 127740430 -16542059 - L2 LINE L2 -1068 2246 2186 280 289 171 0 chr12 127741384 127741526 -16540963 + MER5B DNA MER1_type 20 172 -6 301 156 104 0 chr12 127741726 127741803 -16540686 + MER5A DNA MER1_type 26 110 -79 432 245 145 63 chr12 127742253 127742412 -16540077 - MER5A DNA MER1_type -6 183 12 421 285 22 29 chr12 127742423 127742577 -16539912 + MER5B DNA MER1_type 36 178 0 754 201 6 6 chr12 127742617 127742796 -16539693 + CT-rich Low_complexity Low_complexity 1 179 0 3486 139 5 18 chr12 127743606 127743706 -16538783 - L1MB7 LINE L1 -34 6150 6051 2439 226 88 25 chr12 127743706 127744509 -16537980 - L1MD1 LINE L1 -171 6071 5201 1076 166 0 0 chr12 127744509 127744678 -16537811 - AluJb SINE Alu -7 305 137 3031 222 24 9 chr12 127744684 127745428 -16537061 - L1MD1 LINE L1 -946 5200 4446 419 294 34 0 chr12 127745552 127745671 -16536818 + LTR16A LTR ERVL 1 123 -327 333 305 80 25 chr12 127745790 127746029 -16536460 + LTR16A LTR ERVL 196 447 -3 190 324 49 10 chr12 127746236 127746338 -16536151 + L3 LINE CR1 1089 1194 -383 205 303 0 0 chr12 127746369 127746435 -16536054 - L2 LINE L2 -425 2888 2823 352 147 44 15 chr12 127746492 127746560 -16535929 + L2 LINE L2 2989 3058 -214 193 340 10 29 chr12 127746635 127746738 -16535751 + L2 LINE L2 3208 3308 -5 259 315 18 27 chr12 127747449 127747560 -16534929 + MER5B DNA MER1_type 69 178 0 246 200 0 0 chr12 127747578 127747618 -16534871 + C-rich Low_complexity Low_complexity 1 40 0 680 176 17 11 chr12 127747618 127747794 -16534695 + CT-rich Low_complexity Low_complexity 2 178 0 747 289 43 46 chr12 127748338 127748459 -16534030 - MLT1K LTR MaLR -163 425 305 2028 133 10 7 chr12 127748459 127748759 -16533730 + AluSq SINE Alu 8 308 -5 747 289 43 46 chr12 127748759 127748962 -16533527 - MLT1K LTR MaLR -283 305 102 262 275 12 0 chr12 127749475 127749555 -16532934 + L2 LINE L2 2709 2789 -525 271 327 10 10 chr12 127749966 127750067 -16532422 + L2 LINE L2 3199 3299 -14 207 0 0 0 chr12 127750068 127750091 -16532398 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 813 145 0 0 chr12 127750184 127750301 -16532188 + FLAM_C SINE Alu 9 125 -18 216 302 172 18 chr12 127751383 127751552 -16530937 + MIR SINE MIR 8 202 -60 539 215 135 25 chr12 127751643 127751806 -16530683 + MIR SINE MIR 50 230 -32 238 176 44 29 chr12 127752486 127752554 -16529935 + MIR SINE MIR 109 177 -85 449 290 34 23 chr12 127752674 127752850 -16529639 + MIR SINE MIR 3 180 -82 649 323 19 19 chr12 127753542 127753802 -16528687 + MIR SINE MIR 2 261 -1 329 249 29 18 chr12 127754523 127754655 -16527834 + MIR SINE MIR 1 131 -77 292 300 25 8 chr12 127755561 127755681 -16526808 - L1ME3A LINE L1 -89 6081 5960 747 246 93 71 chr12 127755739 127755954 -16526535 - L1ME3A LINE L1 -214 5956 5747 4103 182 65 23 chr12 127755954 127756778 -16525711 + MER21B LTR ERV1 1 859 -4 747 246 93 71 chr12 127756778 127757184 -16525305 - L1ME3A LINE L1 -423 5747 5321 210 324 15 0 chr12 127757658 127757726 -16524763 - L2 LINE L2 0 3313 3245 341 256 12 0 chr12 127757744 127757830 -16524659 + L2 LINE L2 2394 2480 -834 842 179 16 17 chr12 127757847 127758062 -16524427 + L1ME1 LINE L1 5685 5898 -264 555 85 0 0 chr12 127758542 127758624 -16523865 + (TCC)n Simple_repeat Simple_repeat 1 82 0 2144 120 3 0 chr12 127758624 127758908 -16523581 - AluSx SINE Alu -27 285 1 332 234 53 0 chr12 127758908 127759002 -16523487 + L2 LINE L2 2657 2755 -559 778 62 18 0 chr12 127759102 127759215 -16523274 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 2181 96 0 18 chr12 127759218 127759499 -16522990 - AluSc SINE Alu -33 276 1 291 300 36 27 chr12 127759627 127759737 -16522752 - L2 LINE L2 -186 3086 2976 194 379 23 23 chr12 127760086 127760218 -16522271 + MER5B DNA MER1_type 2 133 -45 1726 170 17 7 chr12 127760452 127760741 -16521748 + AluJo SINE Alu 1 292 -20 418 264 63 91 chr12 127760834 127761088 -16521401 + L2 LINE L2 2918 3164 -149 285 288 55 0 chr12 127761349 127761422 -16521067 + L2 LINE L2 3158 3234 -38 685 295 112 33 chr12 127761923 127762289 -16520200 - LTR16C LTR ERVL -1 490 96 272 250 80 23 chr12 127763466 127763554 -16518935 + MIR SINE MIR 43 135 -73 294 98 0 0 chr12 127763781 127763822 -16518667 + MADE1 DNA Mariner 40 80 0 2400 89 0 7 chr12 127764079 127764383 -16518106 - AluSg SINE Alu -8 302 1 1409 171 79 4 chr12 127764593 127764845 -16517644 + LTR26B LTR ERV1 261 531 0 278 220 45 135 chr12 127764845 127765044 -16517445 - LTR16C LTR ERVL -309 182 2 2159 103 17 7 chr12 127765147 127765448 -16517041 + AluSx SINE Alu 1 304 -8 2084 164 54 54 chr12 127765672 127765744 -16516745 - MSTA LTR MaLR 0 428 357 2288 107 10 0 chr12 127765744 127766052 -16516437 + AluSx SINE Alu 1 311 -1 2084 164 54 54 chr12 127766052 127766407 -16516082 - MSTA LTR MaLR -70 358 1 194 214 0 24 chr12 127766950 127766992 -16515497 + MIR SINE MIR 221 261 -1 443 335 46 12 chr12 127767003 127767176 -16515313 + MIR SINE MIR 7 185 -77 198 0 0 0 chr12 127767225 127767247 -16515242 + (ATG)n Simple_repeat Simple_repeat 2 23 0 730 227 137 23 chr12 127817268 127817568 -16464921 - MER113 DNA MER1_type? -97 424 91 1805 227 60 82 chr12 127817570 127818402 -16464087 - L1MC5 LINE L1 -36 7925 7112 426 310 0 0 chr12 127818552 127818665 -16463824 - MER81 DNA DNA -1 113 1 186 103 0 0 chr12 127819158 127819187 -16463302 + (TAA)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr12 127819196 127819225 -16463264 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2634 125 0 3 chr12 127819225 127819617 -16462872 - L1PB1 LINE L1 -10 6141 5751 10721 92 11 1 chr12 127819720 127821203 -16461286 - L1PB1 LINE L1 -763 5383 3886 536 233 80 28 chr12 127821545 127821721 -16460768 + MIR3 SINE MIR 21 205 -3 281 300 36 55 chr12 127822313 127822423 -16460066 - MIR SINE MIR -71 191 84 352 293 48 53 chr12 127823113 127823486 -16459003 - MLT1I LTR MaLR -6 403 36 395 282 81 11 chr12 127823606 127823780 -16458709 - MIR SINE MIR 0 262 77 1943 162 0 0 chr12 127823782 127824079 -16458410 + AluJb SINE Alu 5 301 -11 511 214 65 39 chr12 127824291 127824445 -16458044 + MER117 DNA MER1_type 1 158 -39 290 219 49 73 chr12 127824702 127824825 -16457664 + L2 LINE L2 3149 3268 -4 622 270 86 13 chr12 127824873 127825106 -16457383 - MIR SINE MIR 0 262 13 224 305 49 0 chr12 127825108 127825190 -16457299 - MIR SINE MIR -3 259 174 1369 104 0 21 chr12 127825234 127825427 -16457062 + AluSg/x SINE Alu 103 291 -21 457 294 0 0 chr12 127825428 127825547 -16456942 - MIR SINE MIR -116 146 28 918 110 55 0 chr12 127825809 127825955 -16456534 - L1MA10 LINE L1 -7 6327 6174 231 333 31 37 chr12 127826020 127826182 -16456307 + L2 LINE L2 3147 3307 -6 1834 168 0 20 chr12 127826208 127826512 -16455977 + AluJo SINE Alu 1 298 -14 1222 296 85 24 chr12 127826558 127826803 -16455686 - MLT1K LTR MaLR -47 541 312 2062 135 26 37 chr12 127826803 127827182 -16455307 - THE1C LTR MaLR 0 375 1 1222 296 85 24 chr12 127827182 127827443 -16455046 - MLT1K LTR MaLR -276 312 4 287 315 33 22 chr12 127828155 127828247 -16454242 + MLT1K LTR MaLR 141 233 -355 324 300 77 23 chr12 127828650 127828870 -16453619 + L2 LINE L2 2625 2856 -458 456 161 0 12 chr12 127828930 127829011 -16453478 - MLT1A1 LTR MaLR 0 365 286 2190 92 7 3 chr12 127829386 127829702 -16452787 + AluSx SINE Alu 1 317 0 213 310 56 0 chr12 127830199 127830270 -16452219 - MIR SINE MIR -89 119 45 1542 94 0 5 chr12 127830478 127830680 -16451809 + AluY SINE Alu 99 299 -12 224 370 41 27 chr12 127830870 127831016 -16451473 - MIR SINE MIR -11 251 104 209 288 8 110 chr12 127831220 127831338 -16451151 - MER5B DNA MER1_type -1 177 72 1071 137 0 0 chr12 127832000 127832336 -16450153 + (ATG)n Simple_repeat Simple_repeat 1 336 0 271 313 61 17 chr12 127833246 127833361 -16449128 + L2 LINE L2 3153 3272 0 625 231 174 5 chr12 127833611 127833806 -16448683 - MIR SINE MIR -33 229 2 193 258 43 43 chr12 127834079 127834172 -16448317 - L2 LINE L2 -270 3002 2910 521 266 62 68 chr12 127835306 127835629 -16446860 + L2 LINE L2 2988 3308 -5 244 339 30 18 chr12 127835911 127836076 -16446413 + L2 LINE L2 2914 3080 -192 3196 65 32 35 chr12 127836254 127836715 -16445774 + L1PA10 LINE L1 5707 6166 -2 426 108 0 0 chr12 127836892 127836957 -16445532 + (CA)n Simple_repeat Simple_repeat 2 66 0 2229 96 3 7 chr12 127837013 127837315 -16445174 - AluSp SINE Alu -12 301 1 214 286 22 33 chr12 127837531 127837622 -16444867 - MIR3 SINE MIR -14 194 105 443 297 32 27 chr12 127837745 127837930 -16444559 + MIR SINE MIR 77 262 0 774 238 108 9 chr12 127838012 127838243 -16444246 + MIR SINE MIR 9 262 0 305 211 95 12 chr12 127838269 127838375 -16444114 - MIR SINE MIR -70 138 28 8455 59 2 0 chr12 127838688 127840533 -16441956 + L1PA6 LINE L1 4302 6154 0 1923 120 0 0 chr12 127840585 127840851 -16441638 + AluSc SINE Alu 35 300 -9 376 241 135 7 chr12 127841237 127841378 -16441111 + MIR SINE MIR 47 205 -57 190 288 0 17 chr12 127842082 127842141 -16440348 + L2 LINE L2 3215 3272 0 329 208 42 0 chr12 127842642 127842714 -16439775 + L2 LINE L2 3238 3312 -1 1043 199 79 108 chr12 127843214 127843767 -16438722 - L1MC5 LINE L1 -832 6976 6531 258 32 0 0 chr12 127843874 127843905 -16438584 + (CA)n Simple_repeat Simple_repeat 2 32 0 339 233 126 31 chr12 127844046 127844205 -16438284 - L1MC4a LINE L1 -1579 6229 6056 402 21 0 0 chr12 127844643 127844690 -16437799 + (TG)n Simple_repeat Simple_repeat 2 48 0 203 218 36 36 chr12 127845207 127845262 -16437227 - MIR SINE MIR -49 213 159 205 239 28 42 chr12 127845589 127845660 -16436829 + MIR3 SINE MIR 87 156 -52 310 286 0 24 chr12 127845662 127845746 -16436743 + Charlie8 DNA MER1_type 1 82 -2335 612 324 21 17 chr12 127845965 127846206 -16436283 - MIR SINE MIR -6 256 15 2308 96 0 0 chr12 127846240 127846553 -16435936 + AluSx SINE Alu 1 313 0 6171 114 2 2 chr12 127846846 127847759 -16434730 + L1P LINE L1 2951 3863 -2283 266 304 43 0 chr12 127848190 127848282 -16434207 - L2 LINE L2 -10 3303 3208 251 310 122 28 chr12 127848400 127848517 -16433972 - L2 LINE L2 -271 3001 2896 654 234 10 102 chr12 127848517 127848722 -16433767 + MER5A DNA MER1_type 3 188 -1 251 310 122 28 chr12 127848722 127848877 -16433612 - L2 LINE L2 -376 2896 2702 652 309 100 28 chr12 127848888 127849277 -16433212 + L2 LINE L2 2896 3312 -1 1859 168 0 13 chr12 127850158 127850473 -16432016 + AluJb SINE Alu 1 311 -1 2219 151 22 3 chr12 127851360 127851717 -16430772 + THE1B LTR MaLR 1 364 0 279 284 28 28 chr12 127851736 127851845 -16430644 + MIR3 SINE MIR 50 158 -50 265 256 132 47 chr12 127851849 127851978 -16430511 + MER5A DNA MER1_type 17 156 -33 420 302 62 76 chr12 127852130 127852550 -16429939 + MLT1K LTR MaLR 155 568 -20 231 309 59 0 chr12 127852559 127852627 -16429862 - MIR SINE MIR -190 72 1 193 183 17 67 chr12 127852860 127852920 -16429569 + L2 LINE L2 3163 3219 -94 2060 132 0 3 chr12 127852951 127853239 -16429250 + AluSx SINE Alu 1 287 -25 29 0 0 0 chr12 127853245 127853274 -16429215 + AT_rich Low_complexity Low_complexity 1 29 0 576 265 41 76 chr12 127854037 127854401 -16428088 + Charlie8 DNA MER1_type 17 347 -2070 220 296 82 41 chr12 127855341 127855439 -16427050 - MIR SINE MIR 0 262 161 2393 201 69 20 chr12 127855451 127855959 -16426530 - MLT1F LTR MaLR -9 533 1 405 242 52 72 chr12 127855962 127856115 -16426374 - MIR SINE MIR -111 151 2 211 216 0 0 chr12 127856217 127856254 -16426235 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 351 237 21 21 chr12 127856292 127856385 -16426104 - MIR SINE MIR -96 112 20 194 171 29 0 chr12 127856438 127856473 -16426016 - MIR SINE MIR -85 123 88 2627 141 21 7 chr12 127856637 127857055 -16425434 + MSTB LTR MaLR 3 426 0 992 129 29 6 chr12 127857085 127857256 -16425233 + L1MB3 LINE L1 6009 6183 0 229 307 34 23 chr12 127857317 127857405 -16425084 - MIR SINE MIR -74 134 46 413 305 55 6 chr12 127858372 127858536 -16423953 + MIR SINE MIR 14 185 -77 1441 266 54 14 chr12 127858979 127859407 -16423082 - LTR16A LTR ERVL -5 445 1 243 337 23 40 chr12 127859535 127859710 -16422779 - L1M4 LINE L1 -3589 2557 2386 367 372 105 21 chr12 127860022 127860404 -16422085 - HAL1b LINE L1 -687 661 248 318 391 8 0 chr12 127862758 127862891 -16419598 + MIR SINE MIR 21 154 -108 492 265 8 0 chr12 127862999 127863116 -16419373 - L2 LINE L2 -8 3264 3147 2592 36 0 23 chr12 127863184 127863487 -16419002 - AluY SINE Alu -15 296 1 21 0 0 0 chr12 127864555 127864576 -16417913 + AT_rich Low_complexity Low_complexity 1 21 0 226 313 111 0 chr12 127864674 127864773 -16417716 - L2 LINE L2 -19 3253 3144 505 295 58 47 chr12 127865192 127865450 -16417039 - MIR SINE MIR 0 262 2 1291 148 56 87 chr12 127866160 127866538 -16415951 + MER69 DNA AcHobo 2161 2526 0 192 200 75 0 chr12 127866950 127866990 -16415499 - MIR3 SINE MIR -54 154 112 933 190 6 11 chr12 127867677 127867856 -16414633 - MER5B DNA MER1_type 0 178 1 442 241 67 51 chr12 127867894 127868089 -16414400 + MIR SINE MIR 65 262 0 332 269 9 28 chr12 127868183 127868291 -16414198 + MIR SINE MIR 30 135 -73 219 250 18 0 chr12 127868786 127868842 -16413647 - MIR3 SINE MIR -137 71 15 348 265 51 17 chr12 127870040 127870157 -16412332 - MIR SINE MIR -69 139 19 224 286 96 111 chr12 127870273 127870472 -16412017 + MIR SINE MIR 48 243 -19 1532 142 146 4 chr12 127870533 127870801 -16411688 + AluJo SINE Alu 1 306 -6 201 196 0 0 chr12 127871462 127871513 -16410976 + (CA)n Simple_repeat Simple_repeat 2 52 0 441 298 77 0 chr12 127871938 127872106 -16410383 + MIR SINE MIR 18 198 -64 354 211 14 0 chr12 127872108 127872179 -16410310 - L2 LINE L2 0 3272 3201 225 135 0 0 chr12 127872435 127872472 -16410017 + L2 LINE L2 3217 3253 -19 2089 126 0 0 chr12 127872473 127872766 -16409723 - AluSx SINE Alu -19 293 1 660 289 89 38 chr12 127872900 127873387 -16409102 + L1MC4a LINE L1 5421 5818 -344 1349 145 0 27 chr12 127873698 127873919 -16408570 - MER20 DNA MER1_type -3 216 2 22 0 0 0 chr12 127874037 127874059 -16408430 + AT_rich Low_complexity Low_complexity 1 22 0 562 254 71 22 chr12 127874248 127874447 -16408042 + MIR SINE MIR 33 250 -12 251 364 0 17 chr12 127875661 127875779 -16406710 - MIR SINE MIR -115 147 32 624 280 26 26 chr12 127876017 127876285 -16406204 - L1MC4a LINE L1 -1921 5887 5620 361 282 102 28 chr12 127876445 127876661 -16405828 - L1MC4a LINE L1 -2322 5486 5255 371 291 26 32 chr12 127877362 127877551 -16404938 + L1MC4a LINE L1 5694 5881 -1927 266 311 84 43 chr12 127877601 127877923 -16404566 + L2 LINE L2 2474 2808 -506 446 255 15 54 chr12 127877948 127878152 -16404337 - L1MC4a LINE L1 -1908 5900 5705 276 354 68 0 chr12 127878157 127878304 -16404185 + L2 LINE L2 2897 3053 -219 1675 229 77 8 chr12 127878359 127878747 -16403742 + MLT1C LTR MaLR 53 467 0 234 91 0 0 chr12 127878868 127878901 -16403588 + (A)n Simple_repeat Simple_repeat 1 33 0 760 255 32 0 chr12 127879257 127879445 -16403044 + MIR SINE MIR 48 241 -21 185 284 86 12 chr12 127879551 127879632 -16402857 + L2 LINE L2 3227 3313 0 490 294 56 11 chr12 127880286 127880466 -16402023 + MIR SINE MIR 32 219 -43 649 187 55 36 chr12 127880469 127880642 -16401847 - LTR45B LTR ERV1 0 593 332 319 373 150 0 chr12 127882433 127882586 -16399903 - MER91A DNA MER1_type -3 193 18 237 299 13 0 chr12 127882643 127882720 -16399769 - MIR SINE MIR -56 152 75 2294 69 3 0 chr12 127884143 127884433 -16398056 - L1PA8A LINE L1 -250 5881 5591 1160 91 113 11 chr12 127884433 127884654 -16397835 + L1PA10 LINE L1 5954 6168 0 191 270 16 48 chr12 127884739 127884802 -16397687 - L2 LINE L2 -12 3301 3241 465 256 326 6 chr12 127885222 127885569 -16396920 - MLT1L LTR MaLR -59 556 99 458 338 14 9 chr12 127886024 127886237 -16396252 + L2 LINE L2 2681 2894 -420 230 260 51 51 chr12 127886447 127886624 -16395865 + L2 LINE L2 3118 3294 -19 346 304 50 75 chr12 127886754 127886955 -16395534 - MER91A DNA MER1_type 0 196 1 184 294 59 20 chr12 127887345 127887447 -16395042 - L2 LINE L2 -25 3288 3183 180 77 0 0 chr12 127887557 127887583 -16394906 + (TG)n Simple_repeat Simple_repeat 2 27 0 2243 90 4 0 chr12 127887866 127888177 -16394312 - AluSp SINE Alu 0 317 6 573 285 105 22 chr12 127888193 127888470 -16394019 - LTR16B LTR ERVL -59 405 106 241 245 0 0 chr12 127888504 127888553 -16393936 - LTR16B LTR ERVL -415 49 1 264 330 111 24 chr12 127888559 127888856 -16393633 - L2 LINE L2 -534 2780 2458 1824 143 48 7 chr12 127888982 127889275 -16393214 - AluSx SINE Alu -7 305 1 478 282 90 22 chr12 127889346 127889731 -16392758 + MLT1L LTR MaLR 142 587 -28 391 278 88 62 chr12 127890097 127890324 -16392165 - MIR SINE MIR -20 242 10 595 131 50 0 chr12 127890459 127890558 -16391931 - MER5A DNA MER1_type -1 188 85 263 296 21 48 chr12 127891282 127891471 -16391018 - L1MC4 LINE L1 -71 7957 7707 2273 109 0 10 chr12 127891479 127891812 -16390677 + AluSx SINE Alu 1 312 0 1747 168 3 40 chr12 127891991 127892312 -16390177 - AluJo SINE Alu -3 309 1 496 284 108 17 chr12 127892398 127892630 -16389859 + MIR SINE MIR 2 254 -8 186 205 0 0 chr12 127892728 127892767 -16389722 + MIR SINE MIR 110 148 -114 1015 195 4 58 chr12 127892956 127893182 -16389307 - MER20 DNA MER1_type -4 215 2 343 216 39 10 chr12 127893332 127893434 -16389055 + MIR SINE MIR 86 190 -72 655 274 119 25 chr12 127893591 127893876 -16388613 + MER102b DNA MER1_type 29 340 -1 452 303 80 6 chr12 127894922 127895097 -16387392 - MIR SINE MIR -74 188 1 319 379 9 0 chr12 127895157 127895273 -16387216 + L2 LINE L2 3155 3271 -1 942 148 7 0 chr12 127895414 127895556 -16386933 - MLT1B LTR MaLR 0 390 248 233 262 0 0 chr12 127895770 127895831 -16386658 - MLT1H LTR MaLR -13 536 476 1776 91 0 4 chr12 127895849 127896091 -16386398 - L1PB1 LINE L1 0 6151 5911 724 314 18 29 chr12 127896141 127896418 -16386071 - MLT1H LTR MaLR -225 324 51 223 314 52 20 chr12 127896651 127896791 -16385698 - MIR SINE MIR -61 147 30 328 336 35 14 chr12 127897009 127897152 -16385337 + MIR SINE MIR 12 157 -105 1985 123 25 0 chr12 127897161 127897438 -16385051 + AluSx SINE Alu 1 284 -28 930 287 101 17 chr12 127897481 127898093 -16384396 - L2 LINE L2 0 3313 2645 1916 163 60 83 chr12 127898144 127898543 -16383946 - MLT1B LTR MaLR 0 390 1 256 170 0 0 chr12 127898676 127898723 -16383766 - L2 LINE L2 -5 3308 3262 195 267 83 17 chr12 127898857 127898917 -16383572 - L2 LINE L2 -50 3222 3159 356 360 18 0 chr12 127899154 127899265 -16383224 + L2 LINE L2 3160 3272 0 735 118 32 164 chr12 127899290 127899510 -16382979 - MER3 DNA MER1_type 0 209 19 848 198 45 0 chr12 127899525 127899682 -16382807 + MER20 DNA MER1_type 1 164 -55 196 313 9 27 chr12 127899917 127900029 -16382460 + L3 LINE CR1 1301 1410 -167 398 248 17 17 chr12 127900129 127900246 -16382243 - MER103 DNA DNA -16 150 34 212 0 36 0 chr12 127901012 127901040 -16381449 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2437 74 0 3 chr12 127901042 127901341 -16381148 - AluY SINE Alu -13 298 1 1727 232 17 21 chr12 127901473 127901952 -16380537 - MER113 DNA MER1_type? -43 478 2 1869 169 0 3 chr12 127903225 127903515 -16378974 - AluSx SINE Alu -23 289 1 220 169 17 17 chr12 127903803 127903862 -16378627 + GA-rich Low_complexity Low_complexity 2 60 0 1051 258 116 64 chr12 127904367 127904883 -16377606 - MLT1H LTR MaLR 0 549 7 356 362 16 5 chr12 127905622 127905807 -16376682 - MIR SINE MIR -74 188 2 688 101 0 0 chr12 127905870 127905969 -16376520 - AluSp/q SINE Alu -1 312 214 22 0 0 0 chr12 127906274 127906296 -16376193 + AT_rich Low_complexity Low_complexity 1 22 0 1466 189 85 4 chr12 127906352 127906633 -16375856 - AluJo SINE Alu -7 305 2 336 250 21 0 chr12 127906637 127906733 -16375756 - L1MC5 LINE L1 -178 7783 7686 452 327 105 37 chr12 127906824 127907338 -16375151 - L2 LINE L2 -1239 2075 1527 205 293 17 0 chr12 127907590 127907648 -16374841 - L2 LINE L2 -336 2977 2919 1690 168 17 31 chr12 127907720 127908012 -16374477 + AluJo SINE Alu 7 294 -18 636 302 110 69 chr12 127908217 127908915 -16373574 + L2 LINE L2 2550 3271 -1 247 299 165 0 chr12 127910001 127910098 -16372391 - MIR SINE MIR -3 259 147 1867 143 0 40 chr12 127910217 127910517 -16371972 + AluJo SINE Alu 1 288 -24 283 306 9 28 chr12 127910526 127910634 -16371855 - MIR SINE MIR -148 114 9 305 235 72 18 chr12 127911381 127911519 -16370970 - MIR SINE MIR -62 146 3 2431 81 7 0 chr12 127912101 127912410 -16370079 - AluY SINE Alu 0 311 1 285 275 18 64 chr12 127912532 127912641 -16369848 + L2 LINE L2 3107 3210 -62 409 269 35 14 chr12 127912790 127912935 -16369554 - MIR SINE MIR -1 261 114 841 262 99 28 chr12 127912936 127913218 -16369271 + MLT1E LTR MaLR 1 302 -291 584 297 58 66 chr12 127913433 127913797 -16368692 + L2 LINE L2 2912 3272 0 378 213 96 0 chr12 127914210 127914304 -16368185 + MER5A DNA MER1_type 4 106 -83 482 283 40 12 chr12 127914353 127914526 -16367963 + MER5B DNA MER1_type 1 178 0 288 159 16 16 chr12 127914564 127914627 -16367862 - MIR SINE MIR -78 184 122 721 197 98 27 chr12 127914731 127914914 -16367575 + MLT1E LTR MaLR 398 593 0 305 306 45 27 chr12 127914914 127915025 -16367464 - MIR SINE MIR -148 114 2 276 282 28 49 chr12 127915025 127915164 -16367325 + MIR SINE MIR 127 262 0 790 234 72 14 chr12 127916595 127916804 -16365685 + MER58A DNA MER1_type 4 224 0 3407 113 4 2 chr12 127918291 127918787 -16363702 + L1PB2 LINE L1 5653 6149 -2 22 0 0 0 chr12 127918787 127918809 -16363680 + AT_rich Low_complexity Low_complexity 1 22 0 332 206 32 87 chr12 127919087 127919213 -16363276 - LTR67 LTR ERVL -1 556 438 318 382 45 6 chr12 127919997 127920154 -16362335 - L2 LINE L2 -8 3264 3102 724 266 25 12 chr12 127921026 127921270 -16361219 - MIR SINE MIR -13 249 3 1705 168 17 14 chr12 127921418 127921709 -16360780 + AluJo SINE Alu 1 292 -20 294 106 0 0 chr12 127921978 127922025 -16360464 + (TG)n Simple_repeat Simple_repeat 2 48 0 363 78 0 0 chr12 127922254 127922305 -16360184 + (TC)n Simple_repeat Simple_repeat 1 51 0 245 330 70 9 chr12 127922343 127922458 -16360031 - L2 LINE L2 -1 3271 3150 1856 142 0 8 chr12 127922475 127922743 -16359746 + AluSx SINE Alu 1 266 -46 950 224 17 21 chr12 127922867 127923104 -16359385 + MIR SINE MIR 6 241 -21 493 222 26 8 chr12 127924023 127924140 -16358349 + MIR SINE MIR 26 144 -118 473 280 51 109 chr12 127924140 127924451 -16358038 - MLT1I LTR MaLR 0 409 117 1501 278 39 35 chr12 127925409 127926241 -16356248 - L2 LINE L2 -1 3312 2474 364 268 58 29 chr12 127927161 127927299 -16355190 + MIR SINE MIR 5 146 -116 1954 142 0 53 chr12 127927368 127927686 -16354803 - AluSx SINE Alu -11 301 1 189 262 71 48 chr12 127928182 127928266 -16354223 + L2 LINE L2 3227 3312 -1 202 225 25 0 chr12 127928318 127928398 -16354091 + (TGGA)n Simple_repeat Simple_repeat 4 85 0 203 235 0 15 chr12 127929154 127929222 -16353267 + CT-rich Low_complexity Low_complexity 1 67 0 560 292 4 69 chr12 127929223 127929349 -16353140 - MIR SINE MIR -3 259 156 2184 108 0 3 chr12 127929349 127929675 -16352814 - AluSx SINE Alu 0 325 1 560 292 4 69 chr12 127929675 127929807 -16352682 - MIR SINE MIR -106 156 17 730 262 81 63 chr12 127929866 127930137 -16352352 - Charlie8 DNA MER1_type -2141 276 1 754 262 91 0 chr12 127930327 127930514 -16351975 - MER3 DNA MER1_type 0 209 6 2189 110 0 0 chr12 127930588 127930893 -16351596 + AluSg SINE Alu 1 305 0 297 89 0 0 chr12 127932250 127932295 -16350194 + (TC)n Simple_repeat Simple_repeat 2 46 0 703 212 19 0 chr12 127932391 127932559 -16349930 - MIR SINE MIR -58 150 8 468 280 15 8 chr12 127932813 127932945 -16349544 + MIR SINE MIR 15 147 -115 241 368 16 63 chr12 127933070 127933260 -16349229 + L2 LINE L2 2895 3075 -197 271 59 20 20 chr12 127933402 127933453 -16349036 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 2218 112 0 0 chr12 127933456 127933741 -16348748 - AluSx SINE Alu -27 285 1 1044 255 120 79 chr12 127933923 127934465 -16348024 - MLT1E LTR MaLR 0 567 4 2385 122 8 22 chr12 127934695 127935056 -16347433 - LTR45B LTR ERV1 -131 358 3 577 220 101 37 chr12 127935617 127935835 -16346654 + MIR SINE MIR 16 247 -15 192 77 0 0 chr12 127935846 127935872 -16346617 + (TTA)n Simple_repeat Simple_repeat 2 27 0 253 321 69 30 chr12 127936988 127937119 -16345370 - L2 LINE L2 -5 3308 3173 281 299 113 13 chr12 127937314 127937483 -16345006 - MIR SINE MIR -41 221 39 741 172 20 76 chr12 127937643 127937700 -16344789 - MER53 DNA DNA -1 188 129 2315 115 0 0 chr12 127937700 127938004 -16344485 - AluSx SINE Alu -8 304 1 741 172 20 76 chr12 127938004 127938144 -16344345 - MER53 DNA DNA -60 129 2 366 265 29 0 chr12 127939148 127939250 -16343239 - MIR SINE MIR -55 207 103 317 310 13 123 chr12 127939934 127940331 -16342158 - L2 LINE L2 -6 3266 2914 3436 95 42 8 chr12 127940731 127941259 -16341230 - L1MA2 LINE L1 0 6304 5759 735 253 70 22 chr12 127941267 127941496 -16340993 - MIR SINE MIR -10 252 13 1495 277 69 31 chr12 127941565 127942117 -16340372 - MLT1K LTR MaLR 0 588 16 221 320 27 0 chr12 127942556 127942631 -16339858 - MIR SINE MIR -20 242 166 612 225 29 26 chr12 127942650 127942842 -16339647 + MIR SINE MIR 16 204 -58 466 316 69 35 chr12 127943452 127943949 -16338540 + L2 LINE L2 2752 3270 -2 4450 87 11 13 chr12 127944154 127944765 -16337724 - L1PA11 LINE L1 -2 6172 5563 181 146 0 0 chr12 127944915 127944956 -16337533 - L2 LINE L2 -338 2975 2935 204 163 0 61 chr12 127944999 127945048 -16337441 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 329 324 97 11 chr12 127945194 127945379 -16337110 - MIR SINE MIR 0 262 62 309 109 0 0 chr12 127946127 127946173 -16336316 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 241 313 167 10 chr12 127946934 127947030 -16335459 + MIR3 SINE MIR 87 197 -11 817 218 62 21 chr12 127948711 127948904 -16333585 - MER20 DNA MER1_type -14 205 5 3520 133 59 66 chr12 127948918 127949675 -16332814 - Tigger3(Golem) DNA MER2_type 0 3029 2278 532 238 10 0 chr12 127949666 127949767 -16332722 - Tigger3(Golem) DNA MER2_type -2921 108 7 * 647 284 47 9 chr12 127949768 127949979 -16332510 + MIR SINE MIR 37 255 -7 272 290 65 0 chr12 127950069 127950162 -16332327 - L2 LINE L2 -4 3268 3170 1240 274 43 20 chr12 127950253 127950651 -16331838 - MLT1I LTR MaLR -2 407 1 330 248 135 26 chr12 127951534 127951716 -16330773 + MIR SINE MIR 56 251 -11 645 261 20 53 chr12 127951952 127952197 -16330292 - MIR SINE MIR -13 249 13 2087 101 0 57 chr12 127952425 127952744 -16329745 + AluSg SINE Alu 1 302 0 564 164 0 0 chr12 127952756 127952866 -16329623 + (TGGA)n Simple_repeat Simple_repeat 1 110 0 248 288 68 18 chr12 127953170 127953333 -16329156 - MIR SINE MIR 0 262 92 932 229 0 11 chr12 127953410 127953598 -16328891 + MER5A DNA MER1_type 4 189 0 429 319 0 0 chr12 127954155 127954268 -16328221 + L2 LINE L2 3186 3298 -15 2256 125 0 3 chr12 127954395 127954707 -16327782 + AluSx SINE Alu 1 311 -1 579 238 124 0 chr12 127954727 127954920 -16327569 + MIR SINE MIR 46 262 0 446 306 101 19 chr12 127955048 127955257 -16327232 + MIR SINE MIR 2 227 -35 331 284 6 74 chr12 127956191 127956353 -16326136 + MER5B DNA MER1_type 5 155 -23 239 286 0 16 chr12 127956864 127956927 -16325562 - Charlie8 DNA MER1_type -1000 1417 1356 351 283 130 23 chr12 127957040 127957217 -16325272 - Charlie8 DNA MER1_type -2195 222 27 322 228 0 50 chr12 127957305 127957406 -16325083 - L2 LINE L2 -9 3263 3168 272 333 19 19 chr12 127957622 127957727 -16324762 - MIR SINE MIR -68 140 36 423 223 33 41 chr12 127958309 127958430 -16324059 + MIR SINE MIR 5 124 -138 564 237 211 44 chr12 127958533 127958803 -16323686 - L1ME2 LINE L1 0 6164 5850 279 325 49 0 chr12 127958857 127958980 -16323509 + L2 LINE L2 3182 3310 -3 402 221 94 31 chr12 127959047 127959174 -16323315 + MIR SINE MIR 65 199 -63 334 330 106 11 chr12 127959821 127960009 -16322480 - MIR SINE MIR -46 216 11 390 194 32 185 chr12 127960255 127960347 -16322142 + MIR SINE MIR 51 155 -107 1804 145 11 18 chr12 127960347 127960658 -16321831 - AluSx SINE Alu 0 309 1 1583 177 3 40 chr12 127960666 127960965 -16321524 - AluJo SINE Alu -24 288 1 390 194 32 185 chr12 127960965 127961078 -16321411 + MIR SINE MIR 163 233 -29 221 304 25 13 chr12 127961312 127961391 -16321098 - MIR SINE MIR -148 114 35 409 258 19 88 chr12 127961459 127961618 -16320871 + MIR SINE MIR 33 180 -82 513 168 0 0 chr12 127961661 127961768 -16320721 + (ATG)n Simple_repeat Simple_repeat 1 107 0 390 306 117 33 chr12 127962408 127962634 -16319855 + MIR SINE MIR 3 262 0 257 292 8 33 chr12 127962677 127962797 -16319692 + L2 LINE L2 2919 3035 -237 287 257 0 0 chr12 127962904 127962974 -16319515 + MIR SINE MIR 85 154 -108 477 328 33 0 chr12 127963468 127963651 -16318838 - MIR SINE MIR -11 251 63 681 276 108 5 chr12 127964227 127964441 -16318048 - MIR SINE MIR -11 251 16 204 226 0 0 chr12 127965497 127965550 -16316939 + L2 LINE L2 2299 2351 -963 486 339 106 8 chr12 127965688 127966045 -16316444 + L2 LINE L2 2560 2951 -363 890 206 81 0 chr12 127966050 127966273 -16316216 + MIR SINE MIR 2 242 -20 2307 95 0 7 chr12 127966300 127966604 -16315885 + AluSq SINE Alu 1 302 -11 567 302 117 0 chr12 127966635 127966900 -16315589 + L2 LINE L2 2976 3271 -1 642 260 5 26 chr12 127967309 127967501 -16314988 + MIR SINE MIR 23 210 -52 1097 251 111 7 chr12 127967829 127968108 -16314381 - LTR16C LTR ERVL -14 477 170 328 317 0 0 chr12 127968125 127968207 -16314282 - L2 LINE L2 -215 3057 2976 305 294 0 0 chr12 127968638 127968723 -16313766 - MIR SINE MIR -85 123 39 1772 249 53 30 chr12 127969580 127970468 -16312021 + L2 LINE L2 2393 3311 -2 333 265 56 66 chr12 127970766 127970920 -16311569 + MIR SINE MIR 16 163 -45 228 232 141 10 chr12 127970967 127971066 -16311423 + MIR SINE MIR 90 201 -61 332 267 31 118 chr12 127971081 127971276 -16311213 - MIR SINE MIR 0 262 85 410 319 97 53 chr12 127971865 127972207 -16310282 + L2 LINE L2 2621 2977 -337 1789 151 3 32 chr12 127972372 127972683 -16309806 - AluJo SINE Alu -10 302 1 412 237 40 87 chr12 127973542 127973715 -16308774 - MIR SINE MIR -6 256 92 761 255 63 11 chr12 127973738 127973956 -16308533 - MIR SINE MIR -1 261 30 514 304 70 6 chr12 127973956 127974127 -16308362 + MER5A DNA MER1_type 2 183 -6 316 254 90 15 chr12 127974780 127974914 -16307575 - MIR3 SINE MIR -63 145 2 829 270 25 10 chr12 127974921 127975125 -16307364 + MIR SINE MIR 56 262 0 761 207 0 6 chr12 127975140 127975319 -16307170 + (CAT)n Simple_repeat Simple_repeat 2 179 0 260 245 0 0 chr12 127975546 127975599 -16306890 - MIR SINE MIR -109 153 101 478 266 221 16 chr12 127975896 127976102 -16306387 + MIR SINE MIR 3 232 -30 272 267 79 20 chr12 127976826 127976927 -16305562 - L2 LINE L2 -13 3300 3194 271 296 70 19 chr12 127977026 127977187 -16305302 + MIR SINE MIR 69 246 -16 727 265 0 18 chr12 127977240 127977410 -16305079 - MER117 DNA MER1_type -2 195 29 279 0 0 0 chr12 127977419 127977450 -16305039 + (T)n Simple_repeat Simple_repeat 1 31 0 192 268 0 0 chr12 127977666 127977707 -16304782 + MIR SINE MIR 71 111 -97 617 320 30 5 chr12 127977752 127977949 -16304540 + MIR SINE MIR 2 203 -59 477 318 78 10 chr12 127978918 127979110 -16303379 + MIR SINE MIR 20 224 -38 299 185 62 15 chr12 127979134 127979199 -16303290 + MIR SINE MIR 63 130 -78 261 365 16 0 chr12 127979671 127979797 -16302692 + (TGGA)n Simple_repeat Simple_repeat 1 128 0 239 231 37 0 chr12 127979840 127979948 -16302541 + (TGGA)n Simple_repeat Simple_repeat 2 113 0 752 284 16 0 chr12 127980384 127980609 -16301880 + MIR SINE MIR 34 260 -2 402 250 160 21 chr12 127980663 127980807 -16301682 + MIR3 SINE MIR 9 172 -36 521 302 35 6 chr12 127980940 127981109 -16301380 - MIR SINE MIR -85 177 4 1799 164 0 27 chr12 127981533 127981862 -16300627 - 7SLRNA srpRNA srpRNA 0 320 1 327 231 49 32 chr12 127981931 127982053 -16300436 + MIR SINE MIR 68 185 -23 340 179 308 15 chr12 127982534 127982696 -16299793 + MIR SINE MIR 22 236 -26 238 338 14 0 chr12 127982701 127982775 -16299714 + MIR SINE MIR 69 143 -65 401 322 35 14 chr12 127982835 127982978 -16299511 + MIR3 SINE MIR 30 175 -33 235 306 28 14 chr12 127983527 127983599 -16298890 + MIR3 SINE MIR 88 160 -48 483 257 0 14 chr12 127983599 127983739 -16298750 - Charlie7 DNA MER1_type 0 2612 2475 181 246 175 0 chr12 127983741 127983798 -16298691 + MIR3 SINE MIR 119 185 -23 197 186 0 47 chr12 127983805 127983848 -16298641 + MIR SINE MIR 103 143 -65 376 247 52 0 chr12 127983877 127983974 -16298515 - L2 LINE L2 -4 3309 3208 492 325 68 64 chr12 127984096 127984616 -16297873 - L2 LINE L2 -1 3271 2758 1846 116 58 7 chr12 127984616 127984910 -16297579 + AluSx SINE Alu 3 311 -1 492 325 68 64 chr12 127984910 127985039 -16297450 - L2 LINE L2 -514 2758 2631 226 301 24 24 chr12 127985175 127985258 -16297231 + MIR SINE MIR 16 98 -110 566 340 5 0 chr12 127985507 127985695 -16296794 + MIR SINE MIR 48 236 -26 1030 253 112 33 chr12 127986518 127987050 -16295439 + L2 LINE L2 2703 3313 0 1078 136 6 0 chr12 127987634 127987810 -16294679 + L1MA5A LINE L1 6105 6281 -16 704 251 69 0 chr12 127987981 127988156 -16294333 - MIR SINE MIR -3 259 73 724 296 85 5 chr12 127988434 127988657 -16293832 - MIR SINE MIR -14 248 8 24 53 0 0 chr12 127988785 127988823 -16293666 + AT_rich Low_complexity Low_complexity 1 38 0 385 331 24 8 chr12 127990143 127990270 -16292219 - MER94 DNA DNA -1 133 5 560 291 95 6 chr12 127990722 127990901 -16291588 - MIR SINE MIR -66 196 2 225 83 0 0 chr12 127993023 127993059 -16289430 + (A)n Simple_repeat Simple_repeat 1 36 0 1468 68 6 0 chr12 128045398 128045575 -16236914 - AluSc SINE Alu -131 178 1 988 191 83 0 chr12 128045583 128045787 -16236702 + MSTD LTR MaLR 176 396 0 279 197 15 30 chr12 128045882 128045948 -16236541 - MLT1K LTR MaLR -327 261 197 459 303 69 37 chr12 128046061 128046249 -16236240 + MER91A DNA MER1_type 1 194 -2 285 241 46 0 chr12 128046285 128046372 -16236117 - MIR SINE MIR -91 171 81 1710 131 71 7 chr12 128046391 128046674 -16235815 - MER44D DNA MER2_type -38 571 1 286 234 16 16 chr12 128046675 128046739 -16235750 - MIR SINE MIR -178 84 21 295 146 0 36 chr12 128047338 128047393 -16235096 + LTR67 LTR ERVL 19 71 -486 1952 152 184 16 chr12 128047475 128047915 -16234574 - L1MC1 LINE L1 -2 6331 5818 263 290 72 21 chr12 128048133 128048249 -16234240 + MIR SINE MIR 17 140 -68 2102 125 0 0 chr12 128048339 128048619 -16233870 + AluSx SINE Alu 1 280 -32 1168 35 35 0 chr12 128048620 128048789 -16233700 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 825 259 67 42 chr12 128049725 128050089 -16232400 - MLT1K LTR MaLR -3 585 150 2119 116 6 13 chr12 128050089 128050400 -16232089 - AluSx SINE Alu -2 310 2 825 259 67 42 chr12 128050400 128050543 -16231946 - MLT1K LTR MaLR -438 150 12 357 205 0 26 chr12 128050649 128050727 -16231762 + MLT1C LTR MaLR 1 76 -314 2767 124 94 15 chr12 128050753 128051211 -16231278 - MER21A LTR ERV1 -6 925 432 1881 133 6 30 chr12 128051211 128051565 -16230924 - MER4A LTR ERV1 0 664 261 577 121 20 30 chr12 128051565 128051664 -16230825 - MER4A LTR ERV1 -566 98 1 * 1114 185 89 27 chr12 128051664 128051965 -16230524 - MER21A LTR ERV1 -496 435 1 2732 165 21 76 chr12 128051968 128052533 -16229956 + MLT2B3 LTR ERVL 21 554 0 1745 193 0 3 chr12 128052574 128052875 -16229614 + AluSx SINE Alu 6 305 -7 1302 167 217 20 chr12 128052883 128053183 -16229306 + MLT1C LTR MaLR 108 466 -1 1423 141 0 0 chr12 128053568 128053790 -16228699 - AluJo SINE Alu 0 307 86 464 235 86 37 chr12 128053796 128053983 -16228506 - L2 LINE L2 -12 3301 3106 2136 111 0 19 chr12 128053987 128054294 -16228195 + AluSx SINE Alu 1 301 -11 1817 167 115 115 chr12 128054483 128054684 -16227805 + MLT2B1 LTR ERVL 1 201 -319 1637 205 3 3 chr12 128054684 128054991 -16227498 + AluJb SINE Alu 1 307 -5 1817 167 115 115 chr12 128054991 128055027 -16227462 + MLT2B1 LTR ERVL 201 236 -284 468 51 0 0 chr12 128055027 128055086 -16227403 + (TC)n Simple_repeat Simple_repeat 2 60 0 1817 167 115 115 chr12 128055086 128055325 -16227164 + MLT2B1 LTR ERVL 236 481 -39 189 0 0 0 chr12 128055325 128055346 -16227143 + (GA)n Simple_repeat Simple_repeat 2 22 0 1817 167 115 115 chr12 128055346 128055387 -16227102 + MLT2B1 LTR ERVL 480 520 0 239 308 11 11 chr12 128055954 128056045 -16226444 + A-rich Low_complexity Low_complexity 3 93 0 1781 132 38 28 chr12 128056109 128056396 -16226093 + AluJb SINE Alu 1 290 -22 200 128 26 0 chr12 128056443 128056482 -16226007 + A-rich Low_complexity Low_complexity 2 41 0 331 333 27 36 chr12 128056482 128056701 -16225788 - MIR SINE MIR -28 234 18 1609 139 39 8 chr12 128056921 128057229 -16225260 + MLT2D LTR ERVL 1 352 -45 301 240 10 0 chr12 128057352 128057452 -16225037 + (TA)n Simple_repeat Simple_repeat 2 102 0 1421 216 130 78 chr12 128057507 128057695 -16224794 - MLT1G LTR MaLR -39 551 374 2030 146 0 28 chr12 128057695 128058016 -16224473 - AluJb SINE Alu 0 312 1 1421 216 130 78 chr12 128058016 128058028 -16224461 - MLT1G LTR MaLR -216 374 364 2011 114 7 0 chr12 128058028 128058301 -16224188 - AluSq SINE Alu -38 275 1 1421 216 130 78 chr12 128058301 128058623 -16223866 - MLT1G LTR MaLR -226 364 1 2576 179 11 7 chr12 128058693 128059158 -16223331 + MLT1C LTR MaLR 1 467 0 1028 139 10 21 chr12 128059161 128059355 -16223134 - MER65A LTR ERV1 0 445 254 800 211 20 7 chr12 128059355 128059507 -16222982 + AluJb SINE Alu 142 295 -17 536 229 11 17 chr12 128059515 128059694 -16222795 + GA-rich Low_complexity Low_complexity 1 178 0 1440 151 96 8 chr12 128059701 128059952 -16222537 - MER65A LTR ERV1 -172 273 1 328 304 32 24 chr12 128060468 128060593 -16221896 + MIR3 SINE MIR 12 137 -71 763 242 37 21 chr12 128060938 128061128 -16221361 + MLT1K LTR MaLR 79 271 -317 1614 130 123 11 chr12 128061186 128061455 -16221034 + AluSg1 SINE Alu 1 299 -10 23 0 0 0 chr12 128061500 128061523 -16220966 + AT_rich Low_complexity Low_complexity 1 23 0 3106 111 20 0 chr12 128061523 128061973 -16220516 - L1PA16 LINE L1 -9 6157 5699 277 196 0 0 chr12 128062083 128062139 -16220350 + MLT1K LTR MaLR 529 584 -4 35 0 0 0 chr12 128062933 128062968 -16219521 + AT_rich Low_complexity Low_complexity 1 35 0 756 160 0 8 chr12 128063157 128063288 -16219201 + FLAM_A SINE Alu 6 135 -7 459 125 0 0 chr12 128063517 128063581 -16218908 + AluS SINE Alu 2 65 -244 277 297 10 40 chr12 128064258 128064359 -16218130 - L2 LINE L2 0 3272 3175 403 171 134 0 chr12 128064431 128064513 -16217976 - L2 LINE L2 -2 3311 3219 324 93 0 0 chr12 128064958 128065001 -16217488 - Alu SINE Alu -257 43 1 1420 220 47 66 chr12 128065002 128065077 -16217412 + MLT2B1 LTR ERVL 102 177 -343 195 42 0 0 chr12 128065077 128065101 -16217388 + (CAATC)n Simple_repeat Simple_repeat 5 28 0 1420 220 47 66 chr12 128065101 128065452 -16217037 + MLT2B1 LTR ERVL 177 520 0 222 183 67 0 chr12 128065467 128065527 -16216962 + MIR SINE MIR 120 183 -79 249 254 173 46 chr12 128065577 128065750 -16216739 - L2 LINE L2 -169 3103 2909 276 257 0 29 chr12 128065823 128065893 -16216596 - L2 LINE L2 -534 2780 2713 250 290 13 65 chr12 128065895 128066050 -16216439 + MIR SINE MIR 87 233 -29 1435 244 50 41 chr12 128066226 128066686 -16215803 - LTR16B LTR ERVL 0 464 1 461 291 34 34 chr12 128066749 128066928 -16215561 + MLT1K LTR MaLR 157 335 -253 2070 91 61 3 chr12 128066930 128067256 -16215233 + AluSq SINE Alu 1 343 0 2288 217 62 6 chr12 128067446 128067981 -16214508 - L1ME1 LINE L1 -5 6161 5597 2380 98 0 0 chr12 128067983 128068280 -16214209 - AluSx SINE Alu -15 297 1 408 167 0 39 chr12 128068398 128068476 -16214013 - MLT2D LTR ERVL -339 75 1 721 256 45 21 chr12 128069507 128069749 -16212740 + MIR SINE MIR 3 250 -12 274 200 18 182 chr12 128069848 128069958 -16212531 - MLT1K LTR MaLR -357 231 140 1462 236 62 25 chr12 128069959 128070438 -16212051 + L1MEc LINE L1 798 1299 -5097 1692 121 18 109 chr12 128070438 128070776 -16211713 + AluJo SINE Alu 1 307 -5 1462 236 62 25 chr12 128070776 128070813 -16211676 + L1MEc LINE L1 1299 1333 -5063 524 277 113 0 chr12 128070832 128071027 -16211462 + MIR SINE MIR 46 262 0 696 234 29 30 chr12 128071100 128071333 -16211156 - MIR SINE MIR 0 262 36 430 254 32 24 chr12 128071336 128071462 -16211027 - MIR3 SINE MIR -30 178 52 295 148 37 0 chr12 128072071 128072125 -16210364 - L2 LINE L2 -219 3053 2998 582 224 16 0 chr12 128072139 128072264 -16210225 + L2 LINE L2 3187 3313 0 869 219 18 67 chr12 128072370 128072594 -16209895 - MER20 DNA MER1_type -5 214 2 3460 196 67 52 chr12 128072595 128073605 -16208884 - L1M4 LINE L1 -1103 5043 4018 1733 281 78 10 chr12 128073610 128074212 -16208277 - L1MEc LINE L1 -5719 677 35 673 256 35 53 chr12 128074443 128074670 -16207819 + MIR SINE MIR 14 236 -26 2472 139 51 10 chr12 128075393 128075804 -16206685 + MSTA LTR MaLR 1 428 0 1051 251 83 48 chr12 128075948 128076174 -16206315 - L1ME4a LINE L1 0 6121 5904 1809 131 0 4 chr12 128076174 128076442 -16206047 + AluSx SINE Alu 29 295 -17 1051 251 83 48 chr12 128076442 128076792 -16205697 - L1ME4a LINE L1 -217 5904 5525 220 318 63 0 chr12 128076841 128076904 -16205585 + L2 LINE L2 3196 3262 -10 2297 103 0 0 chr12 128077055 128077367 -16205122 - AluSx SINE Alu 0 312 1 555 307 53 11 chr12 128078140 128078329 -16204160 - MIR SINE MIR -41 221 25 396 231 14 195 chr12 128078337 128078394 -16204095 + MIR SINE MIR 34 100 -162 1547 164 13 27 chr12 128078394 128078693 -16203796 + AluJo SINE Alu 1 295 -17 396 231 14 195 chr12 128078693 128078912 -16203577 + MIR SINE MIR 100 260 -2 196 322 46 11 chr12 128079648 128079735 -16202754 - MIR3 SINE MIR -117 91 2 247 200 0 0 chr12 128079867 128079912 -16202577 + L2 LINE L2 3266 3310 -3 263 303 40 0 chr12 128080092 128080168 -16202321 + MIR SINE MIR 86 164 -98 249 197 0 0 chr12 128080211 128080272 -16202217 + (CA)n Simple_repeat Simple_repeat 1 61 0 1306 215 66 65 chr12 128080845 128081353 -16201136 + L2 LINE L2 2537 3043 -270 823 162 14 27 chr12 128081354 128081502 -16200987 - BC200 scRNA scRNA -54 146 1 680 253 31 85 chr12 128081502 128081795 -16200694 + L2 LINE L2 3037 3313 0 429 36 0 0 chr12 128081823 128081878 -16200611 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 1765 100 0 80 chr12 128081878 128082179 -16200310 - AluSc SINE Alu -32 277 1 1500 176 34 20 chr12 128082185 128082480 -16200009 - AluJb SINE Alu -4 308 10 405 298 50 33 chr12 128083623 128083744 -16198745 - L2 LINE L2 0 3313 3191 270 291 205 13 chr12 128083943 128084165 -16198324 - L2 LINE L2 -275 3038 2768 236 338 0 0 chr12 128084179 128084250 -16198239 - L2 LINE L2 0 3272 3202 3181 151 46 87 chr12 128084665 128085140 -16197349 + LTR8 LTR ERV1 1 494 -197 1840 110 48 0 chr12 128085140 128085412 -16197077 + AluSg SINE Alu 1 285 -25 887 108 0 7 chr12 128085412 128085551 -16196938 + (GGAA)n Simple_repeat Simple_repeat 3 140 0 3181 151 46 87 chr12 128085551 128085795 -16196694 + LTR8 LTR ERV1 492 691 0 361 221 29 0 chr12 128086028 128086096 -16196393 + L2 LINE L2 3199 3268 -4 253 328 50 25 chr12 128086313 128086579 -16195910 - L2 LINE L2 -274 2998 2718 427 257 143 106 chr12 128086823 128086955 -16195534 + MIR SINE MIR 2 148 -114 2037 125 3 3 chr12 128086955 128087266 -16195223 + AluSx SINE Alu 1 311 -1 427 257 143 106 chr12 128087266 128087370 -16195119 + MIR SINE MIR 148 247 -15 231 370 56 0 chr12 128087386 128087494 -16194995 + L2 LINE L2 3136 3249 -23 288 213 160 11 chr12 128087607 128087701 -16194788 + MIR SINE MIR 85 192 -70 426 222 60 17 chr12 128087706 128087823 -16194666 + MLT1K LTR MaLR 138 259 -329 1885 138 0 19 chr12 128087828 128088139 -16194350 + AluSq SINE Alu 1 305 -8 586 231 97 31 chr12 128088294 128088489 -16194000 + MLT1K LTR MaLR 359 566 -22 1115 277 61 26 chr12 128088551 128089070 -16193419 + MLT1L LTR MaLR 2 568 -47 34 0 0 0 chr12 128089086 128089120 -16193369 + AT_rich Low_complexity Low_complexity 1 34 0 262 413 0 0 chr12 128090570 128090679 -16191810 - L2 LINE L2 -556 2758 2650 226 200 22 0 chr12 128091243 128091288 -16191201 - LTR16A1 LTR ERVL 0 457 412 186 280 136 23 chr12 128091579 128091711 -16190778 + MIR SINE MIR 72 218 -44 396 0 0 0 chr12 128091783 128091827 -16190662 + (TA)n Simple_repeat Simple_repeat 2 45 0 269 229 73 28 chr12 128092492 128092601 -16189888 - MLT1J LTR MaLR -2 509 396 * 684 297 67 19 chr12 128092599 128092761 -16189728 - MER102b DNA MER1_type -1096 332 179 1743 163 3 0 chr12 128092761 128093050 -16189439 - AluJb SINE Alu -22 290 1 684 297 67 19 chr12 128093050 128093200 -16189289 - MER102b DNA MER1_type -1249 179 5 1379 258 85 61 chr12 128093443 128094068 -16188421 - MLT2F LTR ERVL -19 644 5 471 204 6 28 chr12 128094309 128094490 -16187999 + GA-rich Low_complexity Low_complexity 3 179 0 283 89 22 0 chr12 128095637 128095682 -16186807 + MADE1 DNA Mariner 1 46 -34 689 267 86 59 chr12 128096017 128096391 -16186098 - MLT1J1 LTR MaLR 0 446 63 985 255 92 27 chr12 128096483 128096535 -16185954 + L2 LINE L2 2599 2646 -667 1522 92 25 59 chr12 128096535 128096773 -16185716 + MER30 DNA MER1_type 1 230 0 985 255 92 27 chr12 128096773 128097266 -16185223 + L2 LINE L2 2646 3179 -134 1271 104 74 56 chr12 128097304 128097465 -16185024 + Tigger5 DNA MER2_type 2089 2257 -66 2359 87 0 0 chr12 128097465 128097777 -16184712 - AluSq SINE Alu -1 312 1 1271 104 74 56 chr12 128097777 128097846 -16184643 + Tigger5 DNA MER2_type 2257 2323 0 192 158 0 0 chr12 128097846 128097884 -16184605 + (TG)n Simple_repeat Simple_repeat 1 38 0 273 214 71 62 chr12 128097884 128097996 -16184493 + L2 LINE L2 3165 3277 -36 218 263 114 18 chr12 128098315 128098429 -16184060 - L2 LINE L2 -1006 2308 2184 1006 309 43 34 chr12 128098635 128099104 -16183385 - L2 LINE L2 -33 3280 2808 818 159 50 82 chr12 128099115 128099178 -16183311 + MER33 DNA MER1_type 6 69 -2516 2231 91 3 0 chr12 128099178 128099475 -16183014 + AluSx SINE Alu 1 298 -14 818 159 50 82 chr12 128099475 128099631 -16182858 + MER33 DNA MER1_type 69 218 -106 38 0 0 0 chr12 128099631 128099669 -16182820 + AT_rich Low_complexity Low_complexity 1 38 0 352 378 17 0 chr12 128099759 128099878 -16182611 - L2 LINE L2 -507 2807 2687 1374 242 26 3 chr12 128099880 128100182 -16182307 - LTR16A LTR ERVL -8 442 134 195 368 42 84 chr12 128100819 128100985 -16181504 + MIR3 SINE MIR 16 174 -34 784 234 96 0 chr12 128100998 128101186 -16181303 - MIR SINE MIR -14 248 43 1795 141 51 187 chr12 128101993 128102386 -16180103 - L1MC2 LINE L1 -9 6335 6063 2457 101 20 3 chr12 128102386 128102737 -16179752 + L1PB2 LINE L1 5787 6148 -3 1795 141 51 187 chr12 128102737 128102990 -16179499 - L1MC2 LINE L1 -281 6063 5777 192 40 0 0 chr12 128103217 128103242 -16179247 + (TC)n Simple_repeat Simple_repeat 1 25 0 1872 150 3 7 chr12 128103269 128103575 -16178914 + AluJo SINE Alu 1 305 -7 2883 217 64 14 chr12 128103811 128104499 -16177990 + HsTC2c DNA MER2_type 5 726 -3 2815 60 40 3 chr12 128104584 128104935 -16177554 + THE1B LTR MaLR 1 364 0 774 289 51 45 chr12 128105079 128105550 -16176939 + L1ME4a LINE L1 5601 6074 -47 1307 201 82 42 chr12 128106018 128106371 -16176118 + MLT1A2 LTR MaLR 8 374 0 536 296 12 24 chr12 128106459 128106628 -16175861 + MIR SINE MIR 35 201 -61 185 88 29 0 chr12 128106766 128106781 -16175708 + (TTCA)n Simple_repeat Simple_repeat 3 16 -21 6888 105 33 33 chr12 128106781 128107852 -16174637 + MER11C LTR ERVK 1 1071 0 185 88 29 0 chr12 128107852 128107870 -16174619 + (TTCA)n Simple_repeat Simple_repeat 16 37 0 255 213 0 0 chr12 128107887 128107934 -16174555 + MIR SINE MIR 109 155 -107 382 188 12 12 chr12 128107937 128108017 -16174472 + MER116 DNA Mariner 1 80 0 1933 148 3 3 chr12 128108264 128108574 -16173915 + AluSx SINE Alu 1 310 -2 362 273 49 83 chr12 128109072 128109277 -16173212 + L2 LINE L2 3075 3272 0 2122 210 36 14 chr12 128109365 128109870 -16172619 - Charlie1b DNA MER1_type -1 522 7 227 303 15 0 chr12 128109901 128109967 -16172522 - MIR SINE MIR -66 142 76 849 296 29 0 chr12 128109990 128110230 -16172259 - MIR SINE MIR 0 262 16 2128 105 3 3 chr12 128110268 128110563 -16171926 + AluSq SINE Alu 1 295 -18 416 281 31 8 chr12 128111598 128111726 -16170763 - MIR SINE MIR -88 174 44 23 0 0 0 chr12 128112773 128112796 -16169693 + AT_rich Low_complexity Low_complexity 1 23 0 397 245 165 65 chr12 128112960 128113160 -16169329 - L1ME4a LINE L1 -25 6096 5877 270 215 0 46 chr12 128114011 128114076 -16168413 + MIR SINE MIR 200 261 -1 726 230 57 70 chr12 128114673 128114903 -16167586 + MIR SINE MIR 36 262 0 2357 70 0 13 chr12 128115018 128115333 -16167156 + AluY SINE Alu 1 311 0 406 189 28 38 chr12 128115352 128115458 -16167031 + MIR SINE MIR 48 152 -110 196 297 94 0 chr12 128115620 128115684 -16166805 - MIR SINE MIR -109 153 84 * 1281 281 71 51 chr12 128115683 128116174 -16166315 - L2 LINE L2 0 3313 2813 306 206 0 0 chr12 128116190 128116263 -16166226 + (TG)n Simple_repeat Simple_repeat 2 74 0 494 243 68 113 chr12 128116264 128116460 -16166029 - L2 LINE L2 -491 2823 2620 1877 170 27 15 chr12 128116460 128116861 -16165628 + L1MB4 LINE L1 5774 6179 -1 494 243 68 113 chr12 128116861 128116875 -16165614 - L2 LINE L2 -694 2620 2607 1844 159 0 7 chr12 128116875 128117171 -16165318 + AluSx SINE Alu 1 294 -18 494 243 68 113 chr12 128117171 128117313 -16165176 - L2 LINE L2 -707 2607 2486 462 299 63 29 chr12 128117795 128117969 -16164520 + MIR SINE MIR 23 202 -60 207 299 130 23 chr12 128118075 128118252 -16164237 - L2 LINE L2 -833 2481 2286 281 243 14 0 chr12 128118435 128118505 -16163984 - MIR SINE MIR -94 114 44 195 100 0 0 chr12 128118549 128118579 -16163910 + (TC)n Simple_repeat Simple_repeat 1 30 0 362 269 28 58 chr12 128118841 128119041 -16163448 - MLT1K LTR MaLR -325 263 2 825 299 42 0 chr12 128119327 128119544 -16162945 - MIR SINE MIR -21 241 16 1723 194 14 17 chr12 128119729 128120084 -16162405 - MLT1A1 LTR MaLR -11 354 1 2044 116 0 10 chr12 128120186 128120342 -16162147 - AluSx SINE Alu -22 290 134 384 22 0 0 chr12 128120342 128120387 -16162102 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1948 124 0 0 chr12 128120387 128120669 -16161820 - AluSg SINE Alu -28 282 1 2044 116 0 10 chr12 128120669 128120804 -16161685 - AluSx SINE Alu -176 136 1 21 0 0 0 chr12 128120844 128120865 -16161624 + AT_rich Low_complexity Low_complexity 1 21 0 1734 228 84 7 chr12 128121359 128121762 -16160727 + MLT1F LTR MaLR 100 533 -9 467 164 240 0 chr12 128121766 128121870 -16160619 - MER103 DNA DNA -37 129 1 189 121 0 0 chr12 128122024 128122057 -16160432 + (TG)n Simple_repeat Simple_repeat 1 33 0 266 220 0 136 chr12 128122311 128122443 -16160046 - MIR SINE MIR -77 185 72 238 284 93 3 chr12 128122525 128122694 -16159795 + MIR SINE MIR 32 262 0 336 24 0 0 chr12 128122841 128122882 -16159607 + (TG)n Simple_repeat Simple_repeat 1 41 0 2181 119 7 0 chr12 128123035 128123345 -16159144 + AluSx SINE Alu 1 312 0 1812 191 17 9 chr12 128123344 128123690 -16158799 - MER74A LTR ERVL -6 552 204 1469 163 4 28 chr12 128123794 128124045 -16158444 - MLT1A1 LTR MaLR -106 259 15 2069 135 0 0 chr12 128124145 128124456 -16158033 + AluSx SINE Alu 1 311 -1 864 250 85 5 chr12 128125048 128125260 -16157229 - MIR SINE MIR 0 262 34 502 226 43 65 chr12 128125258 128125444 -16157045 - L2 LINE L2 -14 3299 3118 * 293 326 41 0 chr12 128125655 128125753 -16156736 - MIR SINE MIR -113 149 48 993 183 18 74 chr12 128125787 128125892 -16156597 - MER20 DNA MER1_type -3 216 129 2675 87 25 8 chr12 128125892 128126250 -16156239 + THE1B LTR MaLR 1 364 0 993 183 18 74 chr12 128126250 128126373 -16156116 - MER20 DNA MER1_type -90 129 1 188 224 0 17 chr12 128126481 128126539 -16155950 + GA-rich Low_complexity Low_complexity 5 61 0 1991 127 16 3 chr12 128126757 128127065 -16155424 + AluSx SINE Alu 1 312 0 573 332 15 29 chr12 128127663 128127917 -16154572 + MIR SINE MIR 10 262 0 1663 176 33 3 chr12 128128457 128128759 -16153730 - AluSq SINE Alu -2 311 1 530 285 91 86 chr12 128129201 128129727 -16152762 + MLT1L LTR MaLR 87 615 0 1610 161 12 15 chr12 128129796 128130200 -16152289 - LTR47A LTR ERVL 0 452 1 568 184 0 0 chr12 128130624 128130722 -16151767 + MIR3 SINE MIR 59 156 -52 1879 143 0 0 chr12 128130835 128131122 -16151367 - AluSx SINE Alu -25 287 1 190 194 16 129 chr12 128131231 128131293 -16151196 + MIR3 SINE MIR 154 208 0 545 309 187 29 chr12 128131358 128131540 -16150949 - L2 LINE L2 -637 2677 2525 793 241 183 49 chr12 128131540 128131989 -16150500 - MLT1J LTR MaLR -2 509 1 545 309 187 29 chr12 128131989 128132224 -16150265 - L2 LINE L2 -789 2525 2194 270 353 42 42 chr12 128132234 128132424 -16150065 + L2 LINE L2 2688 2877 -437 329 324 22 29 chr12 128132543 128132679 -16149810 - MIR3 SINE MIR -62 146 12 24 32 0 0 chr12 128133371 128133402 -16149087 + AT_rich Low_complexity Low_complexity 1 31 0 2254 89 0 0 chr12 128133663 128133954 -16148535 + AluSc SINE Alu 3 293 -16 787 226 44 102 chr12 128134014 128134395 -16148094 - HAL1 LINE L1 -109 2398 2053 4583 148 3 3 chr12 128134395 128135118 -16147371 + L1PA16 LINE L1 5426 6148 -18 787 226 44 102 chr12 128135118 128135254 -16147235 - HAL1 LINE L1 -454 2053 1911 473 325 12 6 chr12 128135255 128135415 -16147074 + CT-rich Low_complexity Low_complexity 2 162 0 863 314 68 5 chr12 128135447 128135817 -16146672 - HAL1 LINE L1 -606 1901 1509 1081 138 171 9 chr12 128135848 128136065 -16146424 + MSTA LTR MaLR 1 252 -176 7353 145 9 15 chr12 128136121 128137281 -16145208 + MSTA-int LTR MaLR 427 1580 0 2226 129 121 16 chr12 128137281 128137668 -16144821 + MSTA LTR MaLR 1 428 0 1847 153 7 3 chr12 128137714 128138014 -16144475 - AluJo SINE Alu -11 301 1 877 254 50 15 chr12 128138022 128138361 -16144128 - HAL1 LINE L1 -1062 1445 1095 507 238 26 68 chr12 128138513 128138778 -16143711 - HAL1 LINE L1 -1458 1049 796 962 182 6 0 chr12 128139145 128139321 -16143168 + AluJb SINE Alu 134 310 -2 2427 87 51 25 chr12 128139415 128139770 -16142719 - THE1B LTR MaLR 0 364 1 1895 145 0 3 chr12 128140446 128140743 -16141746 + AluJb SINE Alu 1 296 -16 362 333 82 41 chr12 128140886 128141057 -16141432 - MIR SINE MIR -76 186 9 351 256 12 12 chr12 128141383 128141469 -16141020 - MER5C DNA MER1_type -215 109 24 759 314 104 36 chr12 128141512 128142041 -16140448 + MLT1K LTR MaLR 14 578 -10 289 326 33 0 chr12 128142059 128142151 -16140338 - L2 LINE L2 0 3272 3178 1513 231 36 21 chr12 128142384 128142860 -16139629 + MER113 DNA MER1_type? 38 520 -1 486 158 8 31 chr12 128142962 128143089 -16139400 - MER113 DNA MER1_type? -278 243 120 4307 160 20 29 chr12 128143181 128143962 -16138527 + LTR1 LTR ERV1 12 785 0 920 187 106 15 chr12 128144120 128144318 -16138171 - MER20 DNA MER1_type 0 219 4 2055 55 91 4 chr12 128144883 128145157 -16137332 - AluY SINE Alu -11 300 3 1235 292 68 8 chr12 128145216 128145596 -16136893 - LTR16C LTR ERVL 0 491 89 403 289 268 4 chr12 128145755 128145983 -16136506 + L2 LINE L2 2569 2856 -458 395 264 127 85 chr12 128146964 128147176 -16135313 - MIR SINE MIR -13 249 29 349 256 197 17 chr12 128147381 128147498 -16134991 + MIR SINE MIR 2 139 -123 2054 113 0 26 chr12 128147980 128148289 -16134200 + AluSq SINE Alu 1 301 -12 241 238 168 10 chr12 128148293 128148394 -16134095 - L1P1 LINE L1 -350 5805 5689 219 69 0 0 chr12 128148463 128148492 -16133997 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 504 276 35 30 chr12 128148492 128148724 -16133765 - L1ME LINE L1 -353 5768 5536 258 244 22 56 chr12 128148820 128148910 -16133579 + MIR SINE MIR 32 118 -90 265 291 51 13 chr12 128149643 128149722 -16132767 - L2 LINE L2 -6 3307 3226 * 274 242 2 51 chr12 128149690 128149769 -16132720 + MIR SINE MIR 72 146 -72 712 200 78 33 chr12 128150471 128150651 -16131838 + MIR SINE MIR 75 262 0 217 174 233 58 chr12 128150649 128150735 -16131754 - MIR SINE MIR -15 247 147 * 399 290 48 0 chr12 128151067 128151191 -16131298 - MIR SINE MIR 0 262 133 271 284 173 16 chr12 128151232 128151359 -16131130 + MIR SINE MIR 32 178 -84 303 331 31 63 chr12 128151361 128151452 -16131037 - L2 LINE L2 0 3272 3185 1794 152 0 61 chr12 128151452 128151594 -16130895 + AluJb SINE Alu 1 150 -162 1985 109 3 0 chr12 128151594 128151901 -16130588 + AluSp SINE Alu 1 308 0 1794 152 0 61 chr12 128151901 128152087 -16130402 + AluJb SINE Alu 150 310 -2 303 331 31 63 chr12 128152087 128152122 -16130367 - L2 LINE L2 -87 3185 3150 248 250 0 57 chr12 128152120 128152208 -16130281 + MIR SINE MIR 180 262 0 * 1166 233 89 49 chr12 128152917 128153383 -16129106 - MLT1H LTR MaLR 0 593 48 362 203 25 93 chr12 128154419 128154530 -16127959 - MER91B DNA MER1_type 0 190 86 1647 240 115 37 chr12 128154530 128155076 -16127413 - MLT1E LTR MaLR -2 591 3 388 327 9 0 chr12 128155114 128155224 -16127265 - MER91B DNA MER1_type -71 119 9 463 242 159 21 chr12 128155329 128155556 -16126933 - L1MC5 LINE L1 -132 7829 7587 483 252 61 14 chr12 128155854 128156001 -16126488 - MIR SINE MIR -74 188 35 189 418 15 0 chr12 128156118 128156185 -16126304 + L2 LINE L2 3188 3255 -17 303 350 27 49 chr12 128156495 128156678 -16125811 + L2 LINE L2 2904 3082 -190 284 136 0 0 chr12 128156756 128156800 -16125689 + L2 LINE L2 3264 3307 -6 2254 103 0 0 chr12 128156835 128157145 -16125344 + AluSg SINE Alu 1 310 0 1357 255 53 36 chr12 128158785 128158816 -16123673 - LTR16C LTR ERVL 0 491 462 2531 105 22 11 chr12 128158816 128159187 -16123302 - THE1C LTR MaLR 0 375 1 1357 255 53 36 chr12 128159187 128159242 -16123247 - LTR16C LTR ERVL -29 462 409 2184 134 20 6 chr12 128159242 128159592 -16122897 - THE1A LTR MaLR 0 355 1 1357 255 53 36 chr12 128159592 128159920 -16122569 - LTR16C LTR ERVL -82 409 69 3644 129 11 0 chr12 128160218 128160739 -16121750 + MER1A DNA MER1_type 3 529 0 212 395 76 8 chr12 128161318 128161437 -16121052 + MER91A DNA MER1_type 30 156 -40 2558 48 0 0 chr12 128161437 128161748 -16120741 - AluY SINE Alu 0 311 1 189 274 48 16 chr12 128163114 128163176 -16119313 + L2 LINE L2 3159 3222 -50 602 229 90 0 chr12 128163229 128163373 -16119116 + MIR SINE MIR 50 206 -56 198 103 0 0 chr12 128163416 128163445 -16119044 + (CAT)n Simple_repeat Simple_repeat 2 30 0 507 273 49 0 chr12 128164538 128164681 -16117808 - MIR SINE MIR -34 228 79 194 216 20 20 chr12 128164718 128164769 -16117720 - L2 LINE L2 0 3272 3222 528 282 181 14 chr12 128165199 128165415 -16117074 - MIR SINE MIR -10 252 1 509 189 113 0 chr12 128165513 128165619 -16116870 + MIR SINE MIR 64 181 -81 348 273 127 7 chr12 128165883 128166033 -16116456 + L1ME4a LINE L1 5936 6103 -18 236 333 13 0 chr12 128166574 128166649 -16115840 + MER117 DNA MER1_type 16 91 -106 2215 83 17 0 chr12 128166700 128167000 -16115489 + AluSx SINE Alu 2 306 -6 631 240 40 13 chr12 128167538 128167688 -16114801 + MIR SINE MIR 19 172 -90 2057 131 44 52 chr12 128168082 128168449 -16114040 + THE1B LTR MaLR 1 364 0 2090 119 0 3 chr12 128168473 128168776 -16113713 - AluSg SINE Alu -8 302 1 190 296 104 24 chr12 128168840 128168965 -16113524 - MIR SINE MIR -94 168 34 756 284 65 9 chr12 128169122 128169351 -16113138 - MIR SINE MIR -19 243 2 216 97 0 0 chr12 128169541 128169572 -16112917 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 457 294 54 43 chr12 128169816 128170000 -16112489 + MIR SINE MIR 1 186 -76 387 301 104 0 chr12 128170065 128170211 -16112278 - MIR3 SINE MIR 0 208 49 898 197 72 22 chr12 128170213 128170436 -16112053 - MER113 DNA MER1_type? -95 426 193 220 372 11 0 chr12 128171064 128171158 -16111331 - MIR SINE MIR -56 152 58 2261 119 53 0 chr12 128171370 128171690 -16110799 + MER1B DNA MER1_type 1 337 0 396 0 0 0 chr12 128171809 128171853 -16110636 + (CA)n Simple_repeat Simple_repeat 2 45 0 230 293 73 12 chr12 128172166 128172248 -16110241 - L3 LINE CR1 0 1577 1491 262 263 76 25 chr12 128172418 128172536 -16109953 + MIR SINE MIR 24 147 -61 2214 97 0 3 chr12 128172608 128172907 -16109582 + AluSx SINE Alu 1 298 -14 198 0 0 0 chr12 128172907 128172929 -16109560 + (GA)n Simple_repeat Simple_repeat 2 23 0 226 303 43 60 chr12 128173388 128173500 -16108989 + MIR SINE MIR 43 144 -115 1766 144 0 11 chr12 128173500 128173814 -16108675 + AluSx SINE Alu 3 313 0 226 303 43 60 chr12 128173814 128173874 -16108615 + MIR SINE MIR 144 203 -56 285 329 24 37 chr12 128174194 128174358 -16108131 + MIR SINE MIR 46 207 -55 181 311 96 15 chr12 128174629 128174764 -16107725 - MIR3 SINE MIR -59 149 4 547 273 62 54 chr12 128175330 128175382 -16107107 - L1ME4a LINE L1 -1 6120 6070 1656 194 13 19 chr12 128175382 128175498 -16106991 + AluJo SINE Alu 1 116 -196 201 39 0 0 chr12 128175498 128175524 -16106965 + (TAA)n Simple_repeat Simple_repeat 1 26 0 2276 108 0 0 chr12 128175524 128175819 -16106670 + AluSc SINE Alu 1 295 -14 1656 194 13 19 chr12 128175819 128176015 -16106474 + AluJo SINE Alu 114 312 0 547 273 62 54 chr12 128176015 128176350 -16106139 - L1ME4a LINE L1 -51 6070 5730 783 253 4 97 chr12 128176790 128177047 -16105442 - MIR SINE MIR 0 262 30 333 351 128 7 chr12 128177033 128177181 -16105308 + MIR SINE MIR 26 191 -71 * 320 227 102 0 chr12 128177478 128177566 -16104923 + L1ME4a LINE L1 6023 6119 -2 420 179 0 24 chr12 128177943 128178027 -16104462 - MER103 DNA DNA -47 119 38 233 271 53 28 chr12 128178081 128178219 -16104270 - MIR3 SINE MIR -20 188 48 507 266 37 32 chr12 128178223 128178411 -16104078 + MIR SINE MIR 37 225 -37 2420 103 3 0 chr12 128178487 128178799 -16103690 - AluSq SINE Alu 0 313 1 228 333 119 0 chr12 128178963 128179047 -16103442 - MIR SINE MIR -117 145 52 203 182 0 0 chr12 128179242 128179275 -16103214 - MIR SINE MIR -98 164 132 498 278 28 42 chr12 128179311 128179455 -16103034 - MIR SINE MIR -74 188 47 633 121 0 10 chr12 128179567 128179666 -16102823 + MER4A LTR ERV1 1 98 -566 1833 151 3 19 chr12 128179666 128180017 -16102472 + MER4A LTR ERV1 261 664 0 319 229 127 51 chr12 128180023 128180193 -16102296 - MIR SINE MIR -49 213 31 206 346 81 41 chr12 128180523 128180755 -16101734 + MIR SINE MIR 5 249 -13 678 210 28 13 chr12 128180800 128180966 -16101523 + MIR SINE MIR 74 243 -19 314 263 26 0 chr12 128181133 128181247 -16101242 + LTR33A LTR ERVL 404 520 -3 276 244 98 0 chr12 128181851 128181933 -16100556 - MIR SINE MIR -63 145 56 187 254 56 28 chr12 128182185 128182256 -16100233 - L3 LINE CR1 -1233 344 272 2278 181 4 43 chr12 128182755 128183150 -16099339 - MER31A LTR ERV1 -15 470 96 2218 113 3 3 chr12 128183150 128183460 -16099029 - AluSg SINE Alu 0 310 1 2278 181 4 43 chr12 128183460 128183551 -16098938 - MER31A LTR ERV1 -389 96 3 635 206 22 22 chr12 128183703 128183839 -16098650 - MIR SINE MIR -21 241 106 192 315 46 77 chr12 128184017 128184147 -16098342 + MIR3 SINE MIR 46 171 -37 461 239 100 8 chr12 128184335 128184465 -16098024 - MIR SINE MIR -105 157 16 817 192 60 90 chr12 128185097 128185211 -16097278 - MIR SINE MIR 0 262 157 2272 116 0 0 chr12 128185211 128185514 -16096975 - AluSq SINE Alu -7 306 4 817 192 60 90 chr12 128185514 128185633 -16096856 - MIR SINE MIR -105 157 36 249 324 60 9 chr12 128185670 128185852 -16096637 - MIR SINE MIR -4 258 10 350 312 9 0 chr12 128186634 128186743 -16095746 + L2 LINE L2 3202 3311 -2 547 248 117 27 chr12 128186817 128187039 -16095450 - MIR SINE MIR -1 261 20 946 198 103 21 chr12 128187258 128187500 -16094989 - MIR SINE MIR 0 262 1 511 271 20 13 chr12 128187530 128187681 -16094808 - MIR SINE MIR 0 262 111 465 261 159 0 chr12 128188328 128188485 -16094004 + MIR SINE MIR 3 184 -78 551 322 104 19 chr12 128188502 128188934 -16093555 - L2 LINE L2 -476 2838 2370 329 286 102 0 chr12 128188965 128189063 -16093426 - L2 LINE L2 0 3313 3206 599 121 0 10 chr12 128189080 128189179 -16093310 + MER4A LTR ERV1 1 98 -566 1756 101 180 79 chr12 128189180 128189546 -16092943 + MER4A LTR ERV1 262 664 0 945 118 20 0 chr12 128189580 128189732 -16092757 + MER41A LTR ERV1 2 156 -398 3221 116 29 30 chr12 128189749 128190153 -16092336 + MER41B LTR ERV1 112 516 -119 2635 55 0 0 chr12 128190153 128190462 -16092027 - AluY SINE Alu -2 309 1 3221 116 29 30 chr12 128190462 128190582 -16091907 + MER41B LTR ERV1 516 635 0 1225 279 78 41 chr12 128190613 128191075 -16091414 + L2 LINE L2 2815 3293 -20 623 274 68 88 chr12 128191085 128191494 -16090995 + MLT1I LTR MaLR 1 401 -8 1297 268 29 43 chr12 128192003 128192515 -16089974 - MLT1J LTR MaLR -6 505 1 429 20 0 0 chr12 128192796 128192846 -16089643 + (TG)n Simple_repeat Simple_repeat 2 51 0 2354 66 31 0 chr12 128193441 128193727 -16088762 - AluSp SINE Alu -14 299 5 788 294 9 5 chr12 128193775 128193989 -16088500 - MIR SINE MIR -35 227 13 229 279 127 76 chr12 128194310 128194468 -16088021 - L2 LINE L2 -60 3253 3088 2046 151 7 0 chr12 128194525 128194936 -16087553 - AluSx SINE Alu 0 413 1 280 317 50 56 chr12 128194956 128195117 -16087372 + L2 LINE L2 2973 3132 -140 * 656 194 56 71 chr12 128195090 128195286 -16087203 + MIR SINE MIR 62 254 -8 239 366 8 49 chr12 128195338 128195380 -16087109 - MIR3 SINE MIR -14 194 152 533 276 59 12 chr12 128195380 128195550 -16086939 - MER5B DNA MER1_type 0 178 1 239 366 8 49 chr12 128195550 128195630 -16086859 - MIR3 SINE MIR -56 152 77 266 234 363 21 chr12 128196046 128196191 -16086298 + MIR SINE MIR 3 193 -45 195 242 194 0 chr12 128196248 128196310 -16086179 + MIR SINE MIR 189 262 0 372 22 0 0 chr12 128196570 128196615 -16085874 + (TG)n Simple_repeat Simple_repeat 2 46 0 350 244 118 0 chr12 128196618 128196753 -16085736 + Charlie8 DNA MER1_type 39 189 -2228 593 289 76 27 chr12 128196994 128197219 -16085270 - MIR SINE MIR -7 255 20 2053 144 3 19 chr12 128197413 128197725 -16084764 - AluSq SINE Alu -4 309 3 402 224 30 52 chr12 128197725 128197859 -16084630 + MIR SINE MIR 99 229 -33 387 0 0 0 chr12 128197875 128197918 -16084571 + (CA)n Simple_repeat Simple_repeat 2 44 0 183 118 20 39 chr12 128197918 128197969 -16084520 + (TA)n Simple_repeat Simple_repeat 1 50 0 291 258 75 11 chr12 128198642 128198735 -16083754 + MIR SINE MIR 87 185 -77 224 144 38 14 chr12 128199098 128199157 -16083332 - MIR SINE MIR -38 170 110 459 73 0 0 chr12 128200871 128200939 -16081550 + (GA)n Simple_repeat Simple_repeat 1 68 0 459 0 0 0 chr12 128202164 128202215 -16080274 + (CA)n Simple_repeat Simple_repeat 2 52 0 254 28 0 28 chr12 128202275 128202311 -16080178 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1000 235 70 22 chr12 128204803 128205203 -16077286 - MER113 DNA MER1_type? -102 419 1 181 125 0 31 chr12 128205351 128205383 -16077106 + MIR SINE MIR 69 99 -163 206 62 31 0 chr12 128205410 128205442 -16077047 + (TTATA)n Simple_repeat Simple_repeat 4 36 0 1579 176 3 31 chr12 128205442 128205732 -16076757 - AluJb SINE Alu -26 286 5 304 259 110 67 chr12 128206049 128206257 -16076232 - MIR SINE MIR -28 234 9 217 172 0 69 chr12 128206474 128206532 -16075957 + (CCCCAG)n Simple_repeat Simple_repeat 1 54 0 590 254 85 12 chr12 128207859 128208024 -16074465 + MIR SINE MIR 69 245 -17 672 206 139 11 chr12 128208066 128208246 -16074243 - MIR SINE MIR -26 236 34 1794 214 139 8 chr12 128209171 128209647 -16072842 + MLT1H LTR MaLR 12 549 0 651 270 145 5 chr12 128209676 128209876 -16072613 - MIR SINE MIR 0 262 35 1198 238 93 47 chr12 128210378 128210713 -16071776 - MER113 DNA MER1_type? -1 520 153 2114 114 39 0 chr12 128210713 128210994 -16071495 - AluSx SINE Alu -20 292 1 1198 238 93 47 chr12 128210994 128211150 -16071339 - MER113 DNA MER1_type? -368 153 6 424 334 43 68 chr12 128211318 128211743 -16070746 + L2 LINE L2 2766 3175 -97 245 235 125 88 chr12 128211760 128211822 -16070667 - MIR SINE MIR -41 221 163 2319 95 7 0 chr12 128211822 128212116 -16070373 - AluSc SINE Alu -13 296 1 245 235 125 88 chr12 128212116 128212189 -16070300 - MIR SINE MIR -99 163 81 514 287 81 38 chr12 128212488 128212697 -16069792 + MIR SINE MIR 45 262 0 262 302 129 0 chr12 128213141 128213257 -16069232 + L2 LINE L2 3182 3312 -1 4432 143 3 4 chr12 128213537 128214224 -16068265 - L1MC1 LINE L1 -6 6327 5642 2526 68 0 0 chr12 128214233 128214529 -16067960 - AluY SINE Alu -15 296 1 2418 98 3 0 chr12 128214573 128214879 -16067610 - AluSp SINE Alu -6 307 1 727 258 158 45 chr12 128215007 128215407 -16067082 + MLT1K LTR MaLR 135 579 -9 859 322 66 6 chr12 128217244 128217824 -16064665 + MER115 DNA AcHobo 47 684 -9 571 306 73 73 chr12 128218962 128219525 -16062964 + L2 LINE L2 2753 3313 0 1178 110 0 110 chr12 128219771 128219941 -16062548 - L1MA4 LINE L1 -2 6298 6164 1861 145 0 4 chr12 128219941 128220203 -16062286 + AluSx SINE Alu 1 261 -51 1178 110 0 110 chr12 128220203 128220287 -16062202 - L1MA4 LINE L1 -136 6164 6072 1742 154 3 50 chr12 128220636 128220790 -16061699 + L1MA3 LINE L1 5964 6124 -181 2311 96 0 13 chr12 128220790 128221092 -16061397 - AluSx SINE Alu -13 299 2 1742 154 3 50 chr12 128221092 128221294 -16061195 + L1MA3 LINE L1 6124 6303 -2 343 352 0 49 chr12 128221367 128221529 -16060960 - MER91A DNA MER1_type -37 159 6 940 264 67 13 chr12 128222442 128222757 -16059732 - LTR16C LTR ERVL -47 444 113 748 281 56 18 chr12 128222887 128223172 -16059317 + MER102a DNA MER1_type 32 327 -3 32 0 0 0 chr12 128223422 128223454 -16059035 + AT_rich Low_complexity Low_complexity 1 32 0 279 0 0 0 chr12 128223550 128223581 -16058908 + (TC)n Simple_repeat Simple_repeat 1 31 0 428 266 179 58 chr12 128274191 128274398 -16008091 + MIR SINE MIR 2 233 -29 486 285 38 19 chr12 128274446 128274604 -16007885 - MIR SINE MIR -99 163 3 2722 116 39 5 chr12 128275112 128275526 -16006963 - MSTA LTR MaLR 0 428 1 323 42 83 0 chr12 128275593 128275641 -16006848 + MADE1 DNA Mariner 1 52 -28 252 170 94 0 chr12 128275658 128275711 -16006778 - HSMAR1 DNA Mariner -1225 62 5 205 241 0 0 chr12 128276309 128276367 -16006122 + G-rich Low_complexity Low_complexity 1 58 0 390 214 0 0 chr12 128276406 128276546 -16005943 + G-rich Low_complexity Low_complexity 1 140 0 242 196 0 0 chr12 128276568 128276619 -16005870 + G-rich Low_complexity Low_complexity 1 51 0 452 259 0 7 chr12 128276654 128276797 -16005692 + AluSg/x SINE Alu 127 268 -41 238 235 27 155 chr12 128277021 128277095 -16005394 + L2 LINE L2 3143 3180 -133 2464 76 7 0 chr12 128277095 128277396 -16005093 - AluY SINE Alu -8 303 1 238 235 27 155 chr12 128277396 128277508 -16004981 + L2 LINE L2 3180 3305 -8 1139 124 103 22 chr12 128278281 128278466 -16004023 - MER20 DNA MER1_type 0 219 20 438 20 0 0 chr12 128278485 128278536 -16003953 + (CA)n Simple_repeat Simple_repeat 1 51 0 423 297 59 47 chr12 128278625 128278861 -16003628 - MIR SINE MIR -10 252 14 1098 122 0 0 chr12 128279039 128279219 -16003270 + (CAT)n Simple_repeat Simple_repeat 1 180 0 208 268 0 0 chr12 128279657 128279713 -16002776 - MIR SINE MIR -72 136 81 1499 103 26 4 chr12 128279732 128279966 -16002523 - L1PB1 LINE L1 0 6151 5913 1024 259 58 8 chr12 128280076 128280441 -16002048 + LTR33A LTR ERVL 104 523 0 304 223 54 65 chr12 128280585 128280769 -16001720 - L1ME4a LINE L1 -15 6106 5925 355 295 111 6 chr12 128280966 128281186 -16001303 - L1ME4a LINE L1 -313 5808 5555 21 100 0 0 chr12 128281206 128281276 -16001213 + AT_rich Low_complexity Low_complexity 1 70 0 25 65 0 0 chr12 128281332 128281378 -16001111 + AT_rich Low_complexity Low_complexity 1 46 0 455 266 92 51 chr12 128282068 128282458 -16000031 - MLT1K LTR MaLR -4 611 168 245 153 51 17 chr12 128282878 128282937 -15999552 + T-rich Low_complexity Low_complexity 2 62 0 1910 154 3 10 chr12 128282939 128283250 -15999239 - AluJb SINE Alu -3 309 1 1130 265 78 37 chr12 128283708 128284300 -15998189 - L1ME4a LINE L1 0 6121 5506 22 0 0 0 chr12 128284309 128284331 -15998158 + AT_rich Low_complexity Low_complexity 1 22 0 746 190 117 12 chr12 128284427 128284590 -15997899 + AluJo SINE Alu 122 301 -11 475 232 92 60 chr12 128284929 128285114 -15997375 - MIR SINE MIR -68 194 4 389 274 44 0 chr12 128285681 128285794 -15996695 + MIR SINE MIR 34 151 -111 996 155 29 117 chr12 128286419 128286728 -15995761 - MER33 DNA MER1_type -3 321 40 1374 190 64 64 chr12 128286730 128286756 -15995733 + MLT1B LTR MaLR 1 26 -364 426 39 0 0 chr12 128286756 128286808 -15995681 + (CA)n Simple_repeat Simple_repeat 1 52 0 1374 190 64 64 chr12 128286808 128286974 -15995515 + MLT1B LTR MaLR 26 191 -199 2325 98 0 3 chr12 128286974 128287271 -15995218 + AluY SINE Alu 1 296 -15 1374 190 64 64 chr12 128287271 128287466 -15995023 + MLT1B LTR MaLR 190 389 -1 4621 111 6 47 chr12 128287693 128288259 -15994230 - LTR8 LTR ERV1 0 691 160 2401 87 0 3 chr12 128288259 128288568 -15993921 - AluY SINE Alu -3 308 1 4621 111 6 47 chr12 128288568 128288722 -15993767 - LTR8 LTR ERV1 -531 160 1 375 189 38 66 chr12 128289274 128289380 -15993109 - MER63B DNA MER1_type -18 418 316 1676 161 23 79 chr12 128289387 128289779 -15992710 - MER63B DNA MER1_type -64 372 3 631 321 127 43 chr12 128290928 128291705 -15990784 - L2 LINE L2 0 3313 2475 294 189 0 0 chr12 128292125 128292178 -15990311 + L2 LINE L2 3204 3256 -16 181 320 0 0 chr12 128292252 128292302 -15990187 - MIR SINE MIR -127 135 86 1529 256 130 34 chr12 128292303 128292804 -15989685 - MLT1H LTR MaLR 0 549 1 2385 75 10 3 chr12 128293131 128293426 -15989063 - AluSq SINE Alu -16 297 1 685 249 43 11 chr12 128293858 128294043 -15988446 - MER117 DNA MER1_type -4 193 3 407 287 40 27 chr12 128295062 128295212 -15987277 + MIR SINE MIR 34 185 -77 321 237 139 58 chr12 128295323 128295496 -15986993 + MIR SINE MIR 20 206 -56 216 0 0 0 chr12 128295740 128295764 -15986725 + (A)n Simple_repeat Simple_repeat 1 24 0 344 345 14 0 chr12 128296278 128296420 -15986069 - MER103 DNA DNA -1 165 22 2485 67 15 0 chr12 128296501 128296830 -15985659 + L1PA8 LINE L1 5838 6171 -1 2431 83 0 10 chr12 128296838 128297151 -15985338 + AluY SINE Alu 1 310 -1 802 256 33 0 chr12 128297188 128297399 -15985090 - LTR16A LTR ERVL 0 450 233 547 273 7 7 chr12 128297425 128297568 -15984921 + MIR SINE MIR 116 258 -4 1755 233 28 17 chr12 128297972 128298444 -15984045 - L1ME3A LINE L1 0 6170 5694 551 202 39 0 chr12 128298545 128298649 -15983840 - L1ME3A LINE L1 -495 5675 5568 889 94 0 16 chr12 128299003 128299130 -15983359 + FLAM_C SINE Alu 1 125 -18 540 244 151 4 chr12 128299130 128299355 -15983134 - L1MC5 LINE L1 -77 7884 7627 238 192 0 96 chr12 128299358 128299431 -15983058 - L1ME LINE L1 -294 5827 5762 720 213 164 0 chr12 128300429 128300612 -15981877 + MIR SINE MIR 21 233 -29 192 125 0 0 chr12 128300626 128300658 -15981831 + (CA)n Simple_repeat Simple_repeat 2 33 0 2476 88 0 0 chr12 128301826 128302131 -15980358 + AluSx SINE Alu 1 305 -7 2238 113 41 12 chr12 128302412 128302757 -15979732 + L1PB1 LINE L1 5795 6149 -2 233 225 70 14 chr12 128303064 128303135 -15979354 - MER91C DNA MER1_type -35 105 31 229 255 0 0 chr12 128303260 128303307 -15979182 + GA-rich Low_complexity Low_complexity 6 52 0 206 217 22 0 chr12 128303611 128303657 -15978832 - L2 LINE L2 -20 3252 3206 842 95 17 0 chr12 128304488 128304604 -15977885 + AluSp/q SINE Alu 191 308 -5 1590 176 8 26 chr12 128304628 128304980 -15977509 + L1MA9 LINE L1 5937 6282 -30 555 274 65 15 chr12 128304992 128305193 -15977296 + MIR SINE MIR 29 239 -23 329 250 75 17 chr12 128306274 128306394 -15976095 - L2 LINE L2 -2 3311 3185 3213 129 50 11 chr12 128306554 128307089 -15975400 + L1PB4 LINE L1 5594 6149 -7 23 0 0 0 chr12 128307089 128307112 -15975377 + AT_rich Low_complexity Low_complexity 1 23 0 2356 82 0 3 chr12 128307251 128307544 -15974945 + AluSc SINE Alu 1 292 -17 330 248 154 0 chr12 128308098 128308215 -15974274 + MIR3 SINE MIR 59 193 -15 308 293 19 84 chr12 128309102 128309317 -15973172 + MIR SINE MIR 36 236 -26 210 171 0 0 chr12 128309335 128309376 -15973113 + (ATGGTG)n Simple_repeat Simple_repeat 1 41 0 2063 116 0 14 chr12 128309486 128309801 -15972688 - AluSx SINE Alu 0 311 1 404 200 11 0 chr12 128310457 128310552 -15971937 + GA-rich Low_complexity Low_complexity 2 97 0 270 56 0 0 chr12 128310564 128310600 -15971889 + (ATG)n Simple_repeat Simple_repeat 3 38 0 198 320 109 23 chr12 128310616 128310744 -15971745 - MIR SINE MIR 0 262 124 787 227 60 5 chr12 128310855 128311040 -15971449 + MIR SINE MIR 30 224 -38 679 259 105 97 chr12 128311394 128311795 -15970694 - MLT1J LTR MaLR -19 492 89 191 314 11 121 chr12 128311991 128312255 -15970234 - L2 LINE L2 -101 3171 2937 895 202 0 12 chr12 128312266 128312557 -15969932 + FRAM SINE Alu 11 299 0 326 256 8 8 chr12 128312436 128312731 -15969758 + GA-rich Low_complexity Low_complexity 2 296 0 * 203 328 43 38 chr12 128312731 128312966 -15969523 - L2 LINE L2 -411 2903 2668 4050 83 39 0 chr12 128313179 128313712 -15968777 - MER41A LTR ERV1 0 554 1 192 40 0 0 chr12 128315096 128315121 -15967368 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 2118 129 0 22 chr12 128315410 128315728 -15966761 - AluSx SINE Alu -1 311 1 398 213 213 0 chr12 128315889 128315997 -15966492 - MER5A DNA MER1_type -1 188 58 2201 208 119 64 chr12 128316046 128316687 -15965802 + LTR8 LTR ERV1 16 691 0 266 68 159 0 chr12 128316688 128316732 -15965757 - MER5A DNA MER1_type -129 60 10 663 160 39 45 chr12 128317003 128317159 -15965330 + MER104 DNA Tc2 1 155 -25 225 197 82 0 chr12 128317186 128317247 -15965242 - MLT1I LTR MaLR -25 384 319 221 284 88 10 chr12 128317708 128317810 -15964679 + MIR SINE MIR 30 139 -123 466 280 14 0 chr12 128317874 128318017 -15964472 - MIR SINE MIR -29 233 89 900 195 19 0 chr12 128319308 128319462 -15963027 - FRAM SINE Alu -22 154 1 438 20 0 0 chr12 128319463 128319514 -15962975 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2108 120 0 0 chr12 128319514 128319798 -15962691 - AluSx SINE Alu -28 284 1 464 243 108 20 chr12 128320092 128320240 -15962249 + MIR SINE MIR 43 203 -59 628 182 35 0 chr12 128320632 128320802 -15961687 + CT-rich Low_complexity Low_complexity 3 178 0 1719 218 52 59 chr12 128320849 128321389 -15961100 + MER49 LTR ERV1 1 543 -360 2533 55 0 10 chr12 128321389 128321698 -15960791 + AluY SINE Alu 1 306 -5 1719 218 52 59 chr12 128321698 128321835 -15960654 + MER49 LTR ERV1 543 679 -224 2128 132 0 0 chr12 128321835 128322130 -15960359 + AluSx SINE Alu 1 295 -17 1719 218 52 59 chr12 128322130 128322276 -15960213 + MER49 LTR ERV1 679 903 0 983 265 54 32 chr12 128322394 128322764 -15959725 + L2 LINE L2 2927 3304 -9 1734 170 54 64 chr12 128322837 128323183 -15959306 + LTR52 LTR ERVL 1 349 -72 2680 146 49 6 chr12 128323183 128323649 -15958840 + MER66B LTR ERV1 1 486 0 1734 170 54 64 chr12 128323649 128323690 -15958799 + LTR52 LTR ERVL 349 386 -35 1664 152 53 42 chr12 128323690 128324051 -15958438 + MLT1A1 LTR MaLR 1 365 0 1734 170 54 64 chr12 128324051 128324085 -15958404 + LTR52 LTR ERVL 386 419 -2 2195 114 0 20 chr12 128324352 128324483 -15958006 + AluSg SINE Alu 1 133 -177 180 0 0 0 chr12 128324483 128324503 -15957986 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2195 114 0 20 chr12 128324503 128324677 -15957812 + AluSg SINE Alu 133 300 -10 21 0 0 0 chr12 128325047 128325068 -15957421 + AT_rich Low_complexity Low_complexity 1 21 0 246 171 43 14 chr12 128325070 128325140 -15957349 - HsTC2a DNA Tc2 -60 682 611 863 144 0 8 chr12 128325151 128325276 -15957213 + FLAM_C SINE Alu 1 124 -19 34 0 0 0 chr12 128325276 128325310 -15957179 + AT_rich Low_complexity Low_complexity 1 34 0 1350 245 123 56 chr12 128325310 128325618 -15956871 - HsTC2a DNA Tc2 -1280 620 334 2018 100 13 57 chr12 128325618 128325919 -15956570 - AluSx SINE Alu -24 288 1 1350 245 123 56 chr12 128325919 128326185 -15956304 - HsTC2a DNA Tc2 -1566 334 7 476 333 137 15 chr12 128326454 128326790 -15955699 + L2 LINE L2 2896 3272 0 392 314 51 71 chr12 128327070 128327325 -15955164 + L2 LINE L2 3022 3271 -1 312 197 92 26 chr12 128327851 128327927 -15954562 + L2 LINE L2 3227 3307 -6 358 240 115 0 chr12 128327933 128328029 -15954460 - MIR SINE MIR -129 133 27 639 192 18 0 chr12 128328135 128328302 -15954187 + CT-rich Low_complexity Low_complexity 1 170 0 2246 89 0 7 chr12 128328936 128329238 -15953251 - AluSg SINE Alu -10 300 1 470 273 97 7 chr12 128329387 128329541 -15952948 - MIR SINE MIR -69 193 26 331 233 0 0 chr12 128329709 128329769 -15952720 + MER5B DNA MER1_type 11 70 -108 4696 64 2 24 chr12 128329816 128330439 -15952050 - L1PB1 LINE L1 0 6151 5543 781 83 58 8 chr12 128330442 128330562 -15951927 + L1PB1 LINE L1 5386 5511 -640 267 224 0 17 chr12 128330566 128330624 -15951865 + MER5B DNA MER1_type 121 177 -1 398 154 39 13 chr12 128330784 128330862 -15951627 - L1MB5 LINE L1 -256 5928 5849 1075 160 39 10 chr12 128330863 128331069 -15951420 + L1MB5 LINE L1 5955 6166 -8 915 117 0 29 chr12 128331082 128331219 -15951270 + FLAM_C SINE Alu 1 133 0 445 299 181 0 chr12 128331980 128332201 -15950288 + MIR SINE MIR 1 261 -1 702 259 88 29 chr12 128332895 128333290 -15949199 + L2 LINE L2 2621 3033 -239 678 227 155 16 chr12 128333290 128333714 -15948775 - MLT1G1 LTR MaLR 0 595 1 417 329 80 51 chr12 128333714 128333951 -15948538 + L2 LINE L2 3029 3272 0 391 296 88 29 chr12 128334003 128334251 -15948238 - Charlie8 DNA MER1_type -999 1418 74 198 71 0 0 chr12 128334254 128334282 -15948207 + (CA)n Simple_repeat Simple_repeat 1 28 0 293 68 23 0 chr12 128334282 128334326 -15948163 + (GA)n Simple_repeat Simple_repeat 1 45 0 1466 142 0 4 chr12 128334389 128334615 -15947874 + AluSx SINE Alu 1 225 -87 21 0 0 0 chr12 128334653 128334674 -15947815 + AT_rich Low_complexity Low_complexity 1 21 0 396 244 96 51 chr12 128335275 128335431 -15947058 + MIR SINE MIR 19 181 -81 2132 110 0 3 chr12 128335432 128335731 -15946758 - AluSg SINE Alu -12 298 1 554 291 45 6 chr12 128335762 128335941 -15946548 + MIR SINE MIR 61 246 -16 1311 185 106 0 chr12 128335985 128336250 -15946239 - AluJb SINE Alu -19 293 1 541 296 62 0 chr12 128336614 128336793 -15945696 + MIR SINE MIR 53 242 -20 732 150 19 106 chr12 128337146 128337306 -15945183 - MER63A DNA MER1_type 0 210 65 284 286 0 18 chr12 128337375 128337491 -15944998 + T-rich Low_complexity Low_complexity 1 113 0 2289 83 0 0 chr12 128337940 128338230 -15944259 - AluSc SINE Alu -19 290 1 1460 153 0 60 chr12 128338693 128338993 -15943496 - AluJo SINE Alu -10 302 21 474 285 60 74 chr12 128339113 128339452 -15943037 - L1ME4a LINE L1 -94 6027 5694 2414 74 0 0 chr12 128339452 128339762 -15942727 - AluY SINE Alu -1 310 1 474 285 60 74 chr12 128339762 128339840 -15942649 - L1ME4a LINE L1 -427 5694 5616 1090 175 25 15 chr12 128340351 128340551 -15941938 + MER63A DNA MER1_type 9 210 0 725 278 73 21 chr12 128340756 128340990 -15941499 + MIR SINE MIR 13 258 -4 799 215 131 58 chr12 128341909 128341964 -15940525 - MER46C DNA MER2_type -3 335 285 221 0 35 0 chr12 128341964 128341993 -15940496 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 799 215 131 58 chr12 128341993 128342249 -15940240 - MER46C DNA MER2_type -53 285 1 2061 95 7 3 chr12 128342831 128343116 -15939373 + AluSp SINE Alu 1 286 -27 635 222 272 0 chr12 128343170 128343350 -15939139 - MIR SINE MIR -18 244 16 27 29 0 0 chr12 128343765 128343799 -15938690 + AT_rich Low_complexity Low_complexity 1 34 0 582 250 98 57 chr12 128343865 128344109 -15938380 - L2 LINE L2 -49 3264 3011 588 274 57 52 chr12 128344710 128344958 -15937531 - MIR SINE MIR -2 260 12 185 222 0 0 chr12 128344990 128345026 -15937463 - MIR SINE MIR -162 100 65 482 284 62 8 chr12 128345047 128345334 -15937155 - MLT1I LTR MaLR -19 390 72 2146 86 0 14 chr12 128346463 128346755 -15935734 - AluSq SINE Alu -12 301 14 233 269 30 0 chr12 128346861 128346928 -15935561 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 814 186 65 105 chr12 128347004 128347251 -15935238 + MER46C DNA MER2_type 2 238 -100 367 189 38 66 chr12 128347394 128347500 -15934989 + MER63 DNA MER1_type 941 1043 -18 973 129 16 54 chr12 128348052 128348206 -15934283 + LTR8 LTR ERV1 1 148 -543 2116 93 0 13 chr12 128348206 128348508 -15933981 + AluY SINE Alu 1 298 -13 973 129 16 54 chr12 128348508 128348539 -15933950 + LTR8 LTR ERV1 148 179 -512 184 333 0 0 chr12 128349305 128349356 -15933133 - L2 LINE L2 -21 3292 3242 303 311 96 30 chr12 128349394 128349529 -15932960 + MIR SINE MIR 5 148 -114 1963 97 14 10 chr12 128349556 128349845 -15932644 + AluSx SINE Alu 1 290 -22 776 294 69 6 chr12 128349982 128350332 -15932157 - L1MC/D LINE L1 -2058 5750 5379 288 232 37 37 chr12 128350333 128350415 -15932074 + L2 LINE L2 3008 3089 -224 272 279 0 0 chr12 128350407 128350475 -15932014 + L2 LINE L2 3246 3313 0 * 773 137 29 0 chr12 128350607 128350746 -15931743 - Charlie5 DNA MER1_type 0 2624 2482 28 61 0 0 chr12 128350760 128350809 -15931680 + AT_rich Low_complexity Low_complexity 1 49 0 340 226 77 83 chr12 128350822 128350845 -15931644 - L1MD2 LINE L1 -181 6178 6156 1767 175 0 0 chr12 128350845 128351142 -15931347 - AluJb SINE Alu -15 297 1 340 226 77 83 chr12 128351142 128351187 -15931302 - L1MD2 LINE L1 -203 6156 6112 2675 106 5 16 chr12 128351187 128351566 -15930923 - THE1C LTR MaLR 0 375 1 10136 105 42 45 chr12 128351566 128352642 -15929847 - THE1C-int LTR MaLR 0 1580 508 2145 121 3 0 chr12 128352642 128352949 -15929540 - AluSp SINE Alu -5 308 1 10136 105 42 45 chr12 128352949 128353456 -15929033 - THE1C-int LTR MaLR -1072 508 1 2704 100 5 18 chr12 128353456 128353836 -15928653 - THE1C LTR MaLR 0 375 1 340 226 77 83 chr12 128353836 128353945 -15928544 - L1MD2 LINE L1 -244 6115 5999 725 225 11 50 chr12 128354920 128355102 -15927387 + MER5B DNA MER1_type 4 178 0 377 338 106 20 chr12 128355126 128355550 -15926939 - L2 LINE L2 0 3313 2812 569 230 33 20 chr12 128355617 128355769 -15926720 - MIR SINE MIR 0 262 109 1688 120 3 45 chr12 128356044 128356060 -15926429 - AluSx SINE Alu -14 298 283 225 0 0 0 chr12 128356060 128356085 -15926404 + (TC)n Simple_repeat Simple_repeat 1 25 0 1688 120 3 45 chr12 128356085 128356359 -15926130 - AluSx SINE Alu -29 283 20 188 336 58 7 chr12 128356385 128356522 -15925967 + L2 LINE L2 2726 2869 -445 1620 155 46 7 chr12 128356681 128356965 -15925524 - AluJo SINE Alu -17 295 1 370 314 73 8 chr12 128357094 128357218 -15925271 + L2 LINE L2 3136 3267 -5 1290 51 0 0 chr12 128357378 128357536 -15924953 + L1PA6 LINE L1 5997 6154 0 941 169 41 0 chr12 128357554 128357726 -15924763 - AluJb SINE Alu 0 312 134 1992 121 3 0 chr12 128357726 128358015 -15924474 - AluSx SINE Alu -10 302 13 223 227 0 0 chr12 128358027 128358071 -15924418 - L2 LINE L2 -562 2752 2709 833 281 33 0 chr12 128358389 128358599 -15923890 - MIR SINE MIR 0 262 46 1857 139 3 23 chr12 128358611 128358913 -15923576 - AluJo SINE Alu -15 297 2 206 312 39 52 chr12 128359127 128359204 -15923285 - L2 LINE L2 -249 3064 2989 222 351 39 0 chr12 128359334 128359411 -15923078 - L2 LINE L2 -528 2786 2707 310 202 211 39 chr12 128359905 128360009 -15922480 + MIR SINE MIR 23 144 -118 509 285 48 21 chr12 128360022 128360208 -15922281 + MIR SINE MIR 21 211 -51 215 289 8 86 chr12 128360196 128360324 -15922165 + MIR SINE MIR 133 250 -12 * 284 273 0 57 chr12 128360926 128361014 -15921475 + MER5A DNA MER1_type 37 119 -70 381 43 0 0 chr12 128361023 128361070 -15921419 + (TG)n Simple_repeat Simple_repeat 2 48 0 2025 125 7 0 chr12 128361085 128361380 -15921109 - AluSx SINE Alu -15 297 1 255 103 0 0 chr12 128361471 128361510 -15920979 + (TG)n Simple_repeat Simple_repeat 1 39 0 429 279 8 16 chr12 128361514 128361636 -15920853 + MER5A DNA MER1_type 63 183 -6 2042 118 3 0 chr12 128362157 128362444 -15920045 - AluSx SINE Alu -11 301 14 268 301 9 71 chr12 128362449 128362562 -15919927 - L2 LINE L2 -7 3306 3201 940 236 76 2 chr12 128362575 128362953 -15919536 - Charlie4a DNA MER1_type -2 506 24 428 290 27 65 chr12 128363083 128363269 -15919220 - L2 LINE L2 -243 3029 2851 570 322 37 37 chr12 128364826 128365040 -15917449 - MIR SINE MIR -32 230 17 892 320 34 27 chr12 128365450 128365862 -15916627 - L2 LINE L2 0 3313 2899 243 247 57 113 chr12 128366116 128366310 -15916179 - L2 LINE L2 -58 3214 3032 658 112 0 0 chr12 128366327 128366425 -15916064 - AluJ/FRAM SINE Alu -1 311 214 731 189 0 40 chr12 128366433 128366581 -15915908 - FLAM_C SINE Alu -1 142 1 754 249 42 32 chr12 128366600 128366817 -15915672 - MIR SINE MIR -2 260 42 2289 224 12 0 chr12 128366821 128367320 -15915169 + L1PA15-16 LINE L1 2243 2747 -4102 6478 78 10 8 chr12 128367322 128369044 -15913445 + L1PA14 LINE L1 4432 6158 -3 181 288 152 26 chr12 128369062 128369253 -15913236 - L2 LINE L2 -337 2977 2763 2338 46 30 16 chr12 128369259 128369586 -15912903 - AluY SINE Alu 0 332 2 188 313 120 27 chr12 128369627 128369777 -15912712 - L2 LINE L2 -452 2862 2699 373 291 47 16 chr12 128369835 128369962 -15912527 - MIR SINE MIR -6 256 126 312 242 26 153 chr12 128370829 128370944 -15911545 - L2 LINE L2 -5 3308 3225 2321 77 7 0 chr12 128370944 128371244 -15911245 + AluY SINE Alu 1 302 -9 312 242 26 153 chr12 128371244 128371318 -15911171 - L2 LINE L2 -88 3225 3143 1956 119 7 7 chr12 128371523 128371816 -15910673 - AluSx SINE Alu -19 293 1 260 91 23 0 chr12 128371879 128371923 -15910566 + (TC)n Simple_repeat Simple_repeat 1 45 0 198 71 0 0 chr12 128371923 128371951 -15910538 + (TG)n Simple_repeat Simple_repeat 1 28 0 391 296 88 29 chr12 128371954 128372202 -15910287 + Charlie8 DNA MER1_type 74 1407 -1010 417 329 80 51 chr12 128372254 128372491 -15909998 - L2 LINE L2 0 3272 3029 678 227 155 16 chr12 128372491 128372915 -15909574 + MLT1G1 LTR MaLR 1 595 0 690 261 88 29 chr12 128372915 128373310 -15909179 - L2 LINE L2 -239 3033 2621 445 299 181 0 chr12 128374004 128374225 -15908264 - MIR SINE MIR -1 261 1 915 117 0 29 chr12 128374986 128375123 -15907366 - FLAM_C SINE Alu 0 133 1 1075 160 39 10 chr12 128375136 128375342 -15907147 - L1MB5 LINE L1 -8 6166 5955 398 154 39 13 chr12 128375343 128375421 -15907068 + L1MB5 LINE L1 5849 5928 -256 282 246 0 0 chr12 128375581 128375638 -15906851 - MER5B DNA MER1_type -1 177 121 781 83 58 8 chr12 128375642 128375762 -15906727 - L1PB1 LINE L1 -640 5511 5386 4696 64 2 24 chr12 128375765 128376388 -15906101 + L1PB1 LINE L1 5543 6151 0 331 233 0 0 chr12 128376435 128376495 -15905994 - MER5B DNA MER1_type -108 70 11 470 273 97 7 chr12 128376664 128376818 -15905671 + MIR SINE MIR 26 193 -69 2254 89 0 7 chr12 128376967 128377270 -15905219 + AluSg SINE Alu 1 301 -9 639 192 18 0 chr12 128377903 128378070 -15904419 + GA-rich Low_complexity Low_complexity 1 170 0 358 240 115 0 chr12 128378176 128378272 -15904217 + MIR SINE MIR 27 133 -129 300 214 101 34 chr12 128378278 128378367 -15904122 - L2 LINE L2 -6 3266 3172 975 156 0 6 chr12 128378430 128378597 -15903892 + AluSg/x SINE Alu 130 295 -17 258 245 0 0 chr12 128378731 128378784 -15903705 - LTR67 LTR ERVL -3 554 502 218 219 0 0 chr12 128379002 128379043 -15903446 - L2 LINE L2 -221 3051 3011 * 258 250 73 0 chr12 128379041 128379109 -15903380 - MIR3 SINE MIR -50 158 86 1196 252 61 141 chr12 128379350 128380101 -15902388 + MER21B LTR ERV1 22 712 -151 933 286 111 37 chr12 128380227 128380688 -15901801 + MLT1K LTR MaLR 69 563 -25 187 264 0 83 chr12 128380801 128380873 -15901616 + MIR SINE MIR 197 262 0 2230 80 3 10 chr12 128381200 128381500 -15900989 - AluY SINE Alu -6 305 8 2031 103 7 3 chr12 128381500 128381790 -15900699 - AluSq SINE Alu -22 291 1 524 244 250 0 chr12 128381816 128381992 -15900497 + MIR SINE MIR 43 262 0 201 163 0 61 chr12 128382023 128382072 -15900417 + CT-rich Low_complexity Low_complexity 4 49 0 222 205 0 0 chr12 128382072 128382155 -15900334 + (CA)n Simple_repeat Simple_repeat 1 83 0 303 252 38 124 chr12 128382684 128382789 -15899700 + L1ME4a LINE L1 5925 6005 -116 1938 102 34 3 chr12 128382789 128383083 -15899406 - AluSx SINE Alu -9 303 1 303 252 38 124 chr12 128383083 128383187 -15899302 + L1ME4a LINE L1 6005 6116 -5 232 178 0 0 chr12 128383486 128383531 -15898958 + T-rich Low_complexity Low_complexity 1 45 0 1824 104 0 0 chr12 128383536 128383786 -15898703 - AluSg SINE Alu -60 250 1 1942 181 24 0 chr12 128383840 128384176 -15898313 + MER2 DNA MER2_type 1 344 -1 274 365 43 5 chr12 128384217 128384425 -15898064 + L1ME3 LINE L1 5603 5818 -303 2119 108 0 0 chr12 128384434 128384730 -15897759 + AluSg SINE Alu 1 296 -14 180 103 69 0 chr12 128384860 128384889 -15897600 - L2 LINE L2 -76 3237 3207 378 224 198 0 chr12 128384946 128385062 -15897427 - L2 LINE L2 -240 3073 2935 1548 164 0 64 chr12 128385065 128385395 -15897094 + AluJo SINE Alu 1 309 -3 2290 63 3 27 chr12 128385449 128385778 -15896711 + AluY SINE Alu 1 322 0 2161 113 0 0 chr12 128385781 128386092 -15896397 + AluY SINE Alu 1 311 0 321 226 0 130 chr12 128386435 128386454 -15896035 + MIR SINE MIR 50 70 -192 1767 148 3 3 chr12 128386454 128386752 -15895737 + AluJb SINE Alu 1 298 -14 321 226 0 130 chr12 128386752 128386847 -15895642 + MIR SINE MIR 70 149 -113 410 254 24 85 chr12 128386854 128387019 -15895470 + MIR SINE MIR 62 216 -46 385 274 152 10 chr12 128387134 128387331 -15895158 - MIR SINE MIR -2 260 36 2136 112 0 0 chr12 128387622 128387918 -15894571 + AluSx SINE Alu 1 296 -16 2055 120 16 0 chr12 128387929 128388237 -15894252 + AluSp SINE Alu 1 313 0 1000 178 0 11 chr12 128388237 128388417 -15894072 + AluSg/x SINE Alu 132 309 -1 2024 125 10 0 chr12 128388425 128388730 -15893759 + AluSx SINE Alu 3 310 -2 2024 103 0 3 chr12 128388746 128389028 -15893461 + AluSx SINE Alu 13 293 -19 397 289 26 20 chr12 128389049 128389201 -15893288 + L2 LINE L2 2919 3071 -201 748 77 29 10 chr12 128389304 128389408 -15893081 + AluY SINE Alu 2 107 -204 753 202 28 56 chr12 128389560 128389590 -15892899 + L1ME3 LINE L1 5846 5875 -287 1840 147 0 7 chr12 128389590 128389899 -15892590 + AluJb SINE Alu 1 307 0 753 202 28 56 chr12 128389899 128390080 -15892409 + L1ME3 LINE L1 5875 6052 -110 1045 117 95 151 chr12 128390080 128390115 -15892374 - MER33 DNA MER1_type -2261 324 289 2237 64 4 0 chr12 128390115 128390395 -15892094 + AluY SINE Alu 16 296 -15 1045 117 95 151 chr12 128390395 128390464 -15892025 - MER33 DNA MER1_type -2296 289 218 1974 106 3 3 chr12 128390464 128390778 -15891711 + AluSx SINE Alu 1 314 0 1045 117 95 151 chr12 128390778 128390996 -15891493 - MER33 DNA MER1_type -2367 218 18 25 0 0 0 chr12 128391030 128391055 -15891434 + AT_rich Low_complexity Low_complexity 1 25 0 352 138 0 17 chr12 128391064 128391122 -15891367 + Alu SINE Alu 244 300 0 1917 123 7 20 chr12 128391161 128391454 -15891035 - AluSx SINE Alu -13 299 11 1900 101 14 38 chr12 128391472 128391760 -15890729 - AluSx SINE Alu -2 310 30 727 190 44 1 chr12 128391768 128391928 -15890561 - L1ME LINE L1 -342 5820 5652 191 219 24 0 chr12 128392279 128392320 -15890169 - MIR3 SINE MIR -14 194 153 235 218 26 39 chr12 128392320 128392398 -15890091 - MER117 DNA MER1_type 0 197 121 248 224 282 0 chr12 128392513 128392598 -15889891 - MIR SINE MIR -65 143 35 425 265 81 10 chr12 128393220 128393369 -15889120 + MIR SINE MIR 37 194 -68 669 134 0 0 chr12 128393388 128393485 -15889004 + AluJ/FLAM SINE Alu 1 97 -215 297 259 59 24 chr12 128393505 128393590 -15888899 + L2 LINE L2 3138 3225 -47 1835 155 0 0 chr12 128393618 128393925 -15888564 + AluJb SINE Alu 1 307 0 361 296 177 27 chr12 128394135 128394321 -15888168 + MIR SINE MIR 28 241 -21 1601 169 4 4 chr12 128394321 128394599 -15887890 - AluSx SINE Alu -34 278 1 482 193 12 0 chr12 128394605 128394688 -15887801 + L2 LINE L2 3223 3306 -7 210 37 0 0 chr12 128394959 128394986 -15887503 + (CA)n Simple_repeat Simple_repeat 2 28 0 2059 133 0 0 chr12 128395067 128395369 -15887120 + AluSx SINE Alu 5 306 -6 229 208 38 19 chr12 128395541 128395594 -15886895 - L1ME4a LINE L1 -75 6046 5993 2034 131 3 0 chr12 128395743 128396048 -15886441 + AluSq SINE Alu 1 306 -7 621 168 174 20 chr12 128396049 128396198 -15886291 - MER53 DNA DNA -17 172 1 1792 162 0 0 chr12 128396569 128396877 -15885612 - AluSx SINE Alu -4 308 1 480 300 141 14 chr12 128396986 128397206 -15885283 - MIR SINE MIR -2 260 13 2455 53 0 0 chr12 128397313 128397614 -15884875 - AluY SINE Alu -10 301 1 999 141 0 0 chr12 128397701 128397850 -15884639 + FRAM SINE Alu 1 148 -28 818 132 0 0 chr12 128397850 128397971 -15884518 + AluJo/FRAM SINE Alu 169 289 -23 297 0 0 0 chr12 128397987 128398020 -15884469 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 655 330 68 4 chr12 128398024 128398260 -15884229 - MIR SINE MIR 0 262 12 1508 184 0 4 chr12 128398328 128398605 -15883884 + AluSx SINE Alu 1 276 -36 959 182 112 16 chr12 128398835 128399077 -15883412 - AluJo SINE Alu -47 265 1 2147 89 10 3 chr12 128399115 128399418 -15883071 - AluSg SINE Alu -5 305 1 521 271 15 2 chr12 128399485 128399657 -15882832 - L1ME4a LINE L1 -283 5879 5702 1893 118 4 4 chr12 128399657 128399936 -15882553 + AluSg SINE Alu 1 279 -31 576 132 171 112 chr12 128399953 128399966 -15882523 + AluSg/x SINE Alu 123 134 -176 2154 97 0 0 chr12 128399966 128400256 -15882233 + AluSc SINE Alu 1 290 -19 1960 114 0 33 chr12 128400256 128400562 -15881927 + AluSp SINE Alu 1 296 -17 576 132 171 112 chr12 128400562 128400726 -15881763 + AluSg/x SINE Alu 133 310 0 305 270 56 0 chr12 128400728 128400817 -15881672 - MIR SINE MIR -66 142 49 474 281 92 4 chr12 128401050 128401305 -15881184 - L2 LINE L2 -254 3059 2780 625 172 11 29 chr12 128401305 128401479 -15881010 + CT-rich Low_complexity Low_complexity 4 174 0 438 171 9 18 chr12 128401493 128401604 -15880885 + CT-rich Low_complexity Low_complexity 4 113 0 180 0 0 0 chr12 128401610 128401630 -15880859 + (T)n Simple_repeat Simple_repeat 1 20 0 1058 124 10 55 chr12 128401643 128401845 -15880644 + AluSq SINE Alu 1 193 -120 1360 153 65 7 chr12 128401984 128402259 -15880230 + AluSq SINE Alu 14 304 -9 1516 168 44 10 chr12 128402264 128402562 -15879927 + AluSx SINE Alu 1 308 -4 24 32 0 0 chr12 128402568 128402599 -15879890 + AT_rich Low_complexity Low_complexity 1 31 0 1937 111 26 7 chr12 128402609 128402915 -15879574 + AluSx SINE Alu 1 312 0 307 159 79 0 chr12 128403659 128403722 -15878767 + L1ME4a LINE L1 6053 6120 -1 869 142 0 15 chr12 128403757 128403891 -15878598 + FLAM_C SINE Alu 1 132 -1 911 131 0 15 chr12 128403927 128404064 -15878425 + AluSq/x SINE Alu 1 135 -177 2000 103 17 0 chr12 128404064 128404365 -15878124 + AluSg SINE Alu 1 306 -4 186 43 0 0 chr12 128404370 128404393 -15878096 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 417 118 91 0 chr12 128404396 128404506 -15877983 + GA-rich Low_complexity Low_complexity 3 122 0 2120 85 0 49 chr12 128405875 128406181 -15876308 - AluSx SINE Alu -16 296 6 1016 185 0 0 chr12 128406181 128406354 -15876135 - AluSc SINE Alu -9 300 128 1074 131 0 23 chr12 128408508 128408683 -15873806 - AluYb8 SINE Alu -147 171 1 1148 93 0 6 chr12 128408710 128408900 -15873589 + AluSc SINE Alu 120 308 0 22 0 0 0 chr12 128409005 128409027 -15873462 + AT_rich Low_complexity Low_complexity 1 22 0 254 206 14 0 chr12 128409028 128409101 -15873388 + (CA)n Simple_repeat Simple_repeat 1 74 0 633 286 127 33 chr12 128409224 128409636 -15872853 + L2 LINE L2 2551 3000 -313 426 177 42 31 chr12 128409650 128409746 -15872743 + L2 LINE L2 3193 3289 -24 234 105 0 0 chr12 128409751 128409789 -15872700 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 332 258 43 21 chr12 128409805 128409898 -15872591 + L2 LINE L2 3196 3290 -23 280 297 140 40 chr12 128409947 128410169 -15872320 + L2 LINE L2 3022 3265 -48 330 87 0 0 chr12 128410177 128410223 -15872266 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 458 364 84 4 chr12 128410719 128410958 -15871531 - MIR SINE MIR 0 262 5 1968 125 0 16 chr12 128411010 128411313 -15871176 + AluSx SINE Alu 1 298 -14 284 316 187 0 chr12 128411342 128411497 -15870992 + MIR SINE MIR 65 248 -14 577 270 113 45 chr12 128411580 128411802 -15870687 + MIR SINE MIR 6 242 -20 272 228 0 18 chr12 128411879 128411936 -15870553 - L2 LINE L2 -4 3309 3254 349 346 152 30 chr12 128412093 128412816 -15869673 - L2 LINE L2 -541 2773 1963 863 297 5 0 chr12 128414260 128414472 -15868017 + MIR SINE MIR 50 262 0 203 258 129 43 chr12 128414596 128414689 -15867800 - L2 LINE L2 -43 3229 3129 436 311 46 20 chr12 128415169 128415320 -15867169 - MIR SINE MIR 0 262 108 1335 103 98 23 chr12 128415649 128415863 -15866626 - MER30 DNA MER1_type 0 230 1 814 261 107 17 chr12 128421121 128421355 -15861134 + MIR SINE MIR 8 262 0 2253 105 0 6 chr12 128421764 128422079 -15860410 + AluSq SINE Alu 1 313 0 711 265 34 89 chr12 128422405 128422930 -15859559 + L1MEd LINE L1 543 1038 -5081 447 282 135 47 chr12 128422933 128423103 -15859386 + MER5A DNA MER1_type 4 188 -1 399 172 91 0 chr12 128423117 128423216 -15859273 + L1MEd LINE L1 1043 1150 -4969 290 299 0 0 chr12 128423465 128423532 -15858957 + L2 LINE L2 3206 3272 0 36 53 0 0 chr12 128423802 128423859 -15858630 + AT_rich Low_complexity Low_complexity 1 57 0 243 0 0 0 chr12 128423933 128423960 -15858529 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 4425 136 70 96 chr12 128425360 128426297 -15856192 + MER21A LTR ERV1 13 925 -6 1967 123 3 19 chr12 128426330 128426639 -15855850 + AluSx SINE Alu 1 304 -8 1413 186 80 4 chr12 128426955 128427230 -15855259 + AluJb SINE Alu 1 296 -16 2180 99 3 7 chr12 128427856 128428160 -15854329 - AluSq SINE Alu -10 303 1 1537 143 0 34 chr12 128428358 128428624 -15853865 - AluJo SINE Alu -18 294 38 341 77 0 0 chr12 128428658 128428710 -15853779 - Alu SINE Alu -2 298 247 2212 63 3 7 chr12 128430683 128430967 -15851522 + AluSx SINE Alu 17 299 -13 376 19 38 0 chr12 128430993 128431046 -15851443 + (CA)n Simple_repeat Simple_repeat 1 55 0 2247 92 3 0 chr12 128431336 128431631 -15850858 + AluSp SINE Alu 1 296 -17 450 228 56 42 chr12 128431861 128432055 -15850434 + MIR SINE MIR 17 250 -12 446 189 211 11 chr12 128432428 128432579 -15849910 - MER5A DNA MER1_type 0 189 4 1211 179 9 5 chr12 128432701 128432919 -15849570 + MER20 DNA MER1_type 1 219 0 2315 78 0 7 chr12 128433141 128433449 -15849040 + AluSg SINE Alu 1 306 -4 1419 113 5 27 chr12 128433507 128433553 -15848936 + AluSg/x SINE Alu 88 134 -176 2120 48 44 4 chr12 128433553 128433863 -15848626 + AluY SINE Alu 1 321 0 1419 113 5 27 chr12 128433863 128434037 -15848452 + AluSg/x SINE Alu 134 304 -6 1443 175 4 0 chr12 128434145 128434397 -15848092 + AluJb SINE Alu 47 299 -13 523 267 169 34 chr12 128434420 128434686 -15847803 + L1MC/D LINE L1 5352 5653 -2155 * 1377 12 19 0 chr12 128434685 128434845 -15847644 - L1PA4 LINE L1 -531 5624 5462 4709 26 0 2 chr12 128434845 128435377 -15847112 + L1PA4 LINE L1 5609 6150 -5 638 234 41 0 chr12 128435377 128435548 -15846941 + L1MC/D LINE L1 5643 5820 -1988 1343 166 25 4 chr12 128435557 128435798 -15846691 + AluJo SINE Alu 33 278 -34 198 0 0 0 chr12 128435878 128435900 -15846589 + (TA)n Simple_repeat Simple_repeat 2 23 0 264 241 50 75 chr12 128436124 128436323 -15846166 - L1MC/D LINE L1 -1984 5824 5631 2324 96 0 3 chr12 128436433 128436747 -15845742 - AluSp SINE Alu 0 313 1 2190 104 0 0 chr12 128436913 128437212 -15845277 - AluSx SINE Alu -13 299 1 2819 173 67 39 chr12 128437214 128437376 -15845113 - L1MB4 LINE L1 -42 6138 5982 2043 114 0 19 chr12 128437376 128437708 -15844781 - AluSx SINE Alu 0 312 1 2819 173 67 39 chr12 128437708 128438187 -15844302 - L1MB4 LINE L1 -198 5982 5479 184 111 81 20 chr12 128438187 128438286 -15844203 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 282 193 133 0 chr12 128438320 128438403 -15844086 - L1MB4 LINE L1 -709 5474 5381 1684 161 3 14 chr12 128439023 128439315 -15843174 - AluJo SINE Alu -23 289 1 1001 215 53 86 chr12 128440239 128440482 -15842007 - MLT1A1 LTR MaLR -2 403 154 2293 86 0 16 chr12 128440482 128440796 -15841693 + AluSc SINE Alu 1 309 0 1808 119 17 10 chr12 128440796 128441086 -15841403 - L1PA13 LINE L1 -12 6151 5860 2069 111 3 10 chr12 128441086 128441392 -15841097 - AluSg SINE Alu -6 304 1 1001 215 53 86 chr12 128441392 128441512 -15840977 - MLT1A1 LTR MaLR -249 156 98 1699 115 50 8 chr12 128441512 128441773 -15840716 - AluSx SINE Alu -40 272 1 1001 215 53 86 chr12 128441773 128441868 -15840621 - MLT1A1 LTR MaLR -307 98 1 1916 117 14 0 chr12 128442017 128442298 -15840191 + AluSx SINE Alu 1 285 -27 582 15 0 0 chr12 128442298 128442365 -15840124 + (GAGAA)n Simple_repeat Simple_repeat 2 68 0 1033 153 47 0 chr12 128443588 128443758 -15838731 + MER20 DNA MER1_type 31 208 -11 1512 185 32 0 chr12 128443835 128444116 -15838373 - AluJb SINE Alu -22 290 1 2439 48 0 10 chr12 128444546 128444857 -15837632 + AluY SINE Alu 1 308 -3 222 191 0 0 chr12 128446012 128446059 -15836430 + GA-rich Low_complexity Low_complexity 1 47 0 380 318 18 9 chr12 128446138 128446248 -15836241 - MIR SINE MIR -65 143 33 2143 119 0 0 chr12 128446345 128446648 -15835841 + AluSc SINE Alu 1 303 -6 491 275 74 55 chr12 128447636 128448046 -15834443 + L1ME4a LINE L1 5564 5986 -135 382 307 31 0 chr12 128448202 128448329 -15834160 + MIR SINE MIR 99 229 -33 2481 68 0 0 chr12 128448969 128449277 -15833212 + AluSc SINE Alu 1 308 -1 244 229 0 0 chr12 128450695 128450743 -15831746 - MER5A DNA MER1_type -6 183 136 695 155 23 23 chr12 128450752 128450881 -15831608 + FLAM_C SINE Alu 2 130 -3 484 240 39 47 chr12 128450901 128451030 -15831459 - L2 LINE L2 -4 3309 3182 2261 89 0 10 chr12 128451031 128451335 -15831154 - AluSx SINE Alu -10 302 2 258 259 75 68 chr12 128451398 128451545 -15830944 + MER5A DNA MER1_type 31 178 0 678 259 0 15 chr12 128452648 128452845 -15829644 - LTR33 LTR ERVL 0 521 328 782 106 21 84 chr12 128452925 128452998 -15829491 + MER5A DNA MER1_type 1 62 -127 1585 200 0 3 chr12 128452998 128453298 -15829191 + AluJo SINE Alu 1 299 -13 782 106 21 84 chr12 128453298 128453366 -15829123 + MER5A DNA MER1_type 62 133 -56 181 267 44 0 chr12 128453550 128453595 -15828894 - MIR SINE MIR -63 145 99 2157 114 0 0 chr12 128454141 128454438 -15828051 - AluSx SINE Alu -15 297 1 886 256 87 56 chr12 128454459 128454849 -15827640 + MLT1J LTR MaLR 1 402 -109 276 111 37 37 chr12 128454847 128454901 -15827588 + MLT1J1 LTR MaLR 393 446 0 * 2159 115 0 0 chr12 128455072 128455377 -15827112 + AluSg SINE Alu 1 305 -5 210 300 128 51 chr12 128456007 128456456 -15826033 - L2 LINE L2 -218 3054 2518 1997 110 10 3 chr12 128456493 128456783 -15825706 + AluSg SINE Alu 1 292 -18 341 235 0 0 chr12 128456918 128456986 -15825503 - MER46C DNA MER2_type -27 311 244 696 105 0 0 chr12 128456986 128457081 -15825408 - AluSg/x SINE Alu -12 298 204 1163 161 3 99 chr12 128457334 128457515 -15824974 + L1MD3 LINE L1 7730 7874 -121 2042 124 10 0 chr12 128457515 128457821 -15824668 + AluSx SINE Alu 1 309 -3 1163 161 3 99 chr12 128457821 128457931 -15824558 + L1MD3 LINE L1 7874 7993 -2 1904 138 10 7 chr12 128457935 128458233 -15824256 + AluJb SINE Alu 1 299 -13 2244 100 3 0 chr12 128458260 128458560 -15823929 + AluSp SINE Alu 1 301 -12 722 164 33 59 chr12 128458625 128458777 -15823712 + Tigger7 DNA MER2_type 2343 2490 -1 191 376 72 17 chr12 128460418 128460599 -15821890 + L2 LINE L2 2783 2973 -341 247 279 67 58 chr12 128460670 128460774 -15821715 + L2 LINE L2 3168 3272 0 2251 102 3 0 chr12 128461004 128461308 -15821181 + AluSx SINE Alu 1 305 -7 207 0 0 0 chr12 128461356 128461379 -15821110 + (TA)n Simple_repeat Simple_repeat 1 23 0 545 245 36 62 chr12 128461511 128461634 -15820855 + MIR SINE MIR 76 194 -68 712 223 6 11 chr12 128461634 128461809 -15820680 + MER104 DNA MER2_type 4 177 -3 545 245 36 62 chr12 128461809 128461877 -15820612 + MIR SINE MIR 194 262 0 216 0 0 0 chr12 128462029 128462053 -15820436 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2082 77 0 18 chr12 128462055 128462340 -15820149 - AluY SINE Alu -31 280 1 2087 118 3 3 chr12 128463025 128463331 -15819158 + AluSx SINE Alu 1 306 -6 973 196 88 0 chr12 128463395 128463589 -15818900 + MER58A DNA MER1_type 2 212 -12 2170 92 3 0 chr12 128463598 128463891 -15818598 + AluSg SINE Alu 3 296 -14 478 239 123 49 chr12 128463894 128464169 -15818320 + MLT1H1 LTR MaLR 257 555 0 228 251 22 131 chr12 128464169 128464213 -15818276 + MER5A DNA MER1_type 27 74 -115 189 0 0 0 chr12 128464213 128464234 -15818255 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 228 251 22 131 chr12 128464234 128464327 -15818162 + MER5A DNA MER1_type 74 142 -47 1511 174 4 14 chr12 128464327 128464608 -15817881 + AluJo SINE Alu 1 278 -34 228 251 22 131 chr12 128464608 128464652 -15817837 + MER5A DNA MER1_type 142 189 0 2280 96 3 3 chr12 128465115 128465428 -15817061 - AluSp SINE Alu 0 313 1 2027 121 0 0 chr12 128465603 128465893 -15816596 - AluSx SINE Alu -22 290 1 1562 155 3 42 chr12 128466614 128466898 -15815591 + AluJo SINE Alu 1 273 -39 1875 135 10 7 chr12 128466903 128467199 -15815290 - AluSx SINE Alu -15 297 1 2274 78 0 7 chr12 128467900 128468195 -15814294 - AluY SINE Alu -18 293 1 2104 101 7 0 chr12 128468203 128468490 -15813999 - AluSp SINE Alu -16 297 9 2236 116 0 0 chr12 128468556 128468867 -15813622 - AluSx SINE Alu -1 311 1 2351 81 7 0 chr12 128468978 128469286 -15813203 - AluSp SINE Alu -3 310 1 2240 86 3 3 chr12 128470704 128471007 -15811482 + AluSq SINE Alu 1 303 -10 297 247 12 37 chr12 128471204 128471312 -15811177 + MLT1H1 LTR MaLR 44 146 -409 336 291 221 8 chr12 128471326 128471580 -15810909 + MLT1H1 LTR MaLR 273 555 0 455 306 34 35 chr12 128471658 128471900 -15810589 + L1MC4a LINE L1 5603 5822 -299 2280 94 0 0 chr12 128472112 128472409 -15810080 - AluSg SINE Alu -11 299 3 305 62 16 47 chr12 128472914 128472978 -15809511 + (GGGGA)n Simple_repeat Simple_repeat 1 62 0 202 211 15 15 chr12 128472982 128473114 -15809375 + GA-rich Low_complexity Low_complexity 1 132 0 990 163 12 12 chr12 128473833 128473993 -15808496 - FRAM SINE Alu -4 162 3 2048 125 0 7 chr12 128474130 128474434 -15808055 + AluSx SINE Alu 1 302 -10 1713 172 21 0 chr12 128474578 128474868 -15807621 + AluJo SINE Alu 1 296 -16 2201 103 3 0 chr12 128477102 128477402 -15805087 - AluSp SINE Alu -12 301 1 741 260 28 11 chr12 128477806 128477987 -15804502 + MIR SINE MIR 2 185 -77 2182 105 0 6 chr12 128478665 128478978 -15803511 - AluY SINE Alu 0 311 1 1911 112 6 35 chr12 128479019 128479333 -15803156 - AluSg SINE Alu -5 305 1 210 155 17 35 chr12 128479492 128479550 -15802939 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 197 128 21 0 chr12 128479894 128479941 -15802548 + GA-rich Low_complexity Low_complexity 1 48 0 1001 113 184 0 chr12 128479982 128480167 -15802322 + MER20 DNA MER1_type 1 219 0 217 318 16 0 chr12 128480168 128480231 -15802258 - L2 LINE L2 -68 3204 3141 365 211 122 11 chr12 128480267 128480357 -15802132 - MIR SINE MIR -12 250 151 291 317 0 12 chr12 128480448 128480530 -15801959 + MIR SINE MIR 17 97 -165 1566 141 4 0 chr12 128483543 128483784 -15798705 + AluSc SINE Alu 59 300 -9 2202 92 0 0 chr12 128483784 128484077 -15798412 + AluSx SINE Alu 6 298 -14 574 262 54 54 chr12 128484133 128484427 -15798062 - L1ME LINE L1 -564 5606 5313 3451 191 26 23 chr12 128486115 128486692 -15795797 + L1MB8 LINE L1 5171 5744 -434 1938 144 69 32 chr12 128486692 128487040 -15795449 + THE1B LTR MaLR 1 361 -3 3451 191 26 23 chr12 128487040 128487339 -15795150 + L1MB8 LINE L1 5744 6041 -137 2231 80 3 7 chr12 128487583 128487885 -15794604 - AluSc SINE Alu -8 301 1 417 293 170 21 chr12 128487957 128488145 -15794344 - L3 LINE CR1 -40 1537 1322 336 295 71 0 chr12 128488240 128488352 -15794137 - MIR SINE MIR -3 259 140 813 87 79 31 chr12 128488406 128488533 -15793956 - AluJo SINE Alu -178 134 2 1212 170 8 37 chr12 128489458 128489699 -15792790 + AluJo SINE Alu 1 234 -78 1615 186 0 28 chr12 128490025 128490343 -15792146 - AluJo SINE Alu -3 309 1 1302 121 5 19 chr12 128490838 128491090 -15791399 + AluJb SINE Alu 71 319 0 477 216 39 0 chr12 128491113 128491215 -15791274 + L1M4 LINE L1 14 119 -6423 928 239 7 72 chr12 128491345 128491638 -15790851 + L1M4 LINE L1 120 393 -6149 1795 163 29 46 chr12 128491666 128491761 -15790728 + MER2 DNA MER2_type 1 96 -248 1767 142 36 0 chr12 128491761 128492042 -15790447 + AluJb SINE Alu 1 291 -21 1795 163 29 46 chr12 128492042 128492296 -15790193 + MER2 DNA MER2_type 96 344 0 517 189 42 0 chr12 128492659 128492754 -15789735 - L1M4 LINE L1 -6423 119 21 1788 149 3 3 chr12 128492780 128493069 -15789420 - AluJb SINE Alu -18 294 6 298 310 47 31 chr12 128493126 128493255 -15789234 - L1MC4a LINE L1 -1941 5867 5737 230 295 16 93 chr12 128493508 128493637 -15788852 + L2 LINE L2 3182 3300 -13 1003 263 101 41 chr12 128494350 128494555 -15787934 + L1MC4a LINE L1 5568 5759 -2049 2296 93 0 0 chr12 128494555 128494855 -15787634 + AluSx SINE Alu 1 300 -12 1003 263 101 41 chr12 128494855 128495166 -15787323 + L1MC4a LINE L1 5759 6115 -1693 2314 82 0 3 chr12 128495220 128495524 -15786965 + AluSq SINE Alu 1 303 -10 297 247 12 37 chr12 128495721 128495829 -15786660 + MLT1H1 LTR MaLR 44 146 -409 336 291 221 8 chr12 128495843 128496097 -15786392 + MLT1H1 LTR MaLR 273 555 0 455 306 34 35 chr12 128496175 128496417 -15786072 + L1MC4a LINE L1 5603 5822 -299 2281 97 0 0 chr12 128496629 128496928 -15785561 - AluSg SINE Alu -11 299 1 376 19 38 0 chr12 128497219 128497272 -15785217 + (TG)n Simple_repeat Simple_repeat 1 55 0 2212 63 3 7 chr12 128497297 128497581 -15784908 - AluSx SINE Alu -13 299 17 341 77 0 0 chr12 128499554 128499606 -15782883 + Alu SINE Alu 248 299 -2 1537 143 0 34 chr12 128499640 128499906 -15782583 + AluJo SINE Alu 38 294 -18 275 234 45 15 chr12 128500070 128500272 -15782217 + CT-rich Low_complexity Low_complexity 1 208 0 485 257 107 59 chr12 128500480 128500733 -15781756 - L1ME4a LINE L1 -114 6007 5743 2998 157 12 2 chr12 128501706 128502223 -15780266 - L1MC1 LINE L1 0 6333 5812 1298 195 24 30 chr12 128502227 128502524 -15779965 - AluJb SINE Alu -17 295 1 1640 144 11 4 chr12 128502553 128502816 -15779673 - L1PB3 LINE L1 0 6154 5890 220 302 57 66 chr12 128502945 128503051 -15779438 + L2 LINE L2 3206 3310 -3 1390 168 0 45 chr12 128503675 128503961 -15778528 + AluJo SINE Alu 40 312 0 786 114 20 54 chr12 128503967 128504116 -15778373 + L1MB3 LINE L1 6040 6183 0 216 0 0 0 chr12 128504131 128504155 -15778334 + (CA)n Simple_repeat Simple_repeat 2 25 0 180 378 24 24 chr12 128504387 128504469 -15778020 - MIR SINE MIR -107 101 20 1976 134 3 10 chr12 128504711 128505025 -15777464 - AluSx SINE Alu 0 312 1 198 273 73 0 chr12 128505050 128505105 -15777384 - L3 LINE CR1 -3 1574 1516 259 262 47 105 chr12 128505111 128505209 -15777280 - MER117 DNA MER1_type -35 162 77 2336 63 27 0 chr12 128505209 128505509 -15776980 - AluY SINE Alu -3 308 1 259 262 47 105 chr12 128505509 128505582 -15776907 - MER117 DNA MER1_type -120 77 1 420 292 157 22 chr12 128505591 128505769 -15776720 - L3 LINE CR1 -54 1523 1322 336 295 71 0 chr12 128505864 128505976 -15776513 - MIR SINE MIR -3 259 140 813 87 79 31 chr12 128506030 128506157 -15776332 - AluJo SINE Alu -178 134 2 283 379 118 6 chr12 128506255 128506585 -15775904 - L3 LINE CR1 -513 1064 698 180 0 0 0 chr12 128506749 128506769 -15775720 + (T)n Simple_repeat Simple_repeat 1 20 0 1026 151 6 6 chr12 128507092 128507258 -15775231 - FRAM SINE Alu 0 166 1 334 264 202 48 chr12 128507388 128507596 -15774893 - MIR SINE MIR -10 252 13 2192 103 0 0 chr12 128508900 128509201 -15773288 + AluSx SINE Alu 1 301 -11 278 409 0 0 chr12 128510094 128510187 -15772302 - MIR3 SINE MIR -27 181 89 2351 81 7 0 chr12 128512027 128512335 -15770154 + AluSp SINE Alu 1 310 -3 2236 116 0 0 chr12 128512446 128512757 -15769732 + AluSx SINE Alu 1 311 -1 2144 106 3 0 chr12 128512823 128513116 -15769373 + AluSp SINE Alu 9 302 -11 655 304 73 37 chr12 128513122 128513477 -15769012 - L1MC4a LINE L1 -1864 5944 5577 2412 88 0 0 chr12 128513761 128514069 -15768420 - AluSg SINE Alu 0 310 3 42 0 0 0 chr12 128514394 128514436 -15768053 + AT_rich Low_complexity Low_complexity 1 42 0 183 129 0 0 chr12 128514478 128514509 -15767980 + (GA)n Simple_repeat Simple_repeat 1 31 0 305 62 16 47 chr12 128514578 128514642 -15767847 + (GGGGA)n Simple_repeat Simple_repeat 1 62 0 202 211 15 15 chr12 128514646 128514778 -15767711 + GA-rich Low_complexity Low_complexity 1 132 0 990 163 12 12 chr12 128515497 128515657 -15766832 - FRAM SINE Alu -4 162 3 2199 115 0 3 chr12 128515794 128516106 -15766383 + AluSq SINE Alu 1 311 -2 235 314 137 16 chr12 128516597 128516721 -15765768 + MIR SINE MIR 110 248 -14 2139 118 0 0 chr12 128516812 128517116 -15765373 - AluSx SINE Alu -8 304 1 1025 184 44 29 chr12 128517919 128518125 -15764364 - MER20 DNA MER1_type -7 212 4 2076 112 0 3 chr12 128518308 128518604 -15763885 - AluSx SINE Alu -17 295 1 497 177 23 62 chr12 128519014 128519144 -15763345 + AluSg/x SINE Alu 133 257 -55 326 256 107 50 chr12 128519212 128519422 -15763067 - L1MCa LINE L1 -5128 1254 976 280 291 91 9 chr12 128519586 128519696 -15762793 + MIR SINE MIR 21 139 -123 546 268 39 0 chr12 128519750 128519903 -15762586 - MIR SINE MIR -15 247 89 836 195 19 0 chr12 128521194 128521348 -15761141 - FRAM SINE Alu -22 154 1 474 18 0 0 chr12 128521349 128521404 -15761085 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1986 120 0 0 chr12 128521404 128521688 -15760801 - AluSx SINE Alu -28 284 1 526 250 108 20 chr12 128521982 128522130 -15760359 + MIR SINE MIR 43 203 -59 436 193 18 0 chr12 128522522 128522631 -15759858 + CT-rich Low_complexity Low_complexity 4 114 0 359 235 39 39 chr12 128522643 128522745 -15759744 - LTR39 LTR ERV1 -306 477 376 358 154 15 15 chr12 128522720 128522785 -15759704 - MLT1C LTR MaLR -402 65 1 * 457 169 46 0 chr12 128522877 128523007 -15759482 + CT-rich Low_complexity Low_complexity 3 138 0 1720 218 52 59 chr12 128523054 128523594 -15758895 + MER49 LTR ERV1 1 543 -360 2399 55 0 10 chr12 128523594 128523903 -15758586 + AluY SINE Alu 1 306 -5 1720 218 52 59 chr12 128523903 128524040 -15758449 + MER49 LTR ERV1 543 679 -224 2011 132 0 0 chr12 128524040 128524336 -15758153 + AluSx SINE Alu 1 296 -16 1720 218 52 59 chr12 128524336 128524482 -15758007 + MER49 LTR ERV1 679 903 0 1129 265 54 32 chr12 128524600 128524970 -15757519 + L2 LINE L2 2927 3304 -9 1759 168 54 64 chr12 128525043 128525389 -15757100 + LTR52 LTR ERVL 1 349 -72 2695 146 49 6 chr12 128525389 128525855 -15756634 + MER66B LTR ERV1 1 486 0 1759 168 54 64 chr12 128525855 128525896 -15756593 + LTR52 LTR ERVL 349 386 -35 1672 152 53 42 chr12 128525896 128526257 -15756232 + MLT1A1 LTR MaLR 1 365 0 1759 168 54 64 chr12 128526257 128526291 -15756198 + LTR52 LTR ERVL 386 419 -2 2086 111 0 20 chr12 128526558 128526689 -15755800 + AluSg SINE Alu 1 133 -177 180 0 0 0 chr12 128526689 128526709 -15755780 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2086 111 0 20 chr12 128526709 128526883 -15755606 + AluSg SINE Alu 133 300 -10 23 0 0 0 chr12 128527253 128527276 -15755213 + AT_rich Low_complexity Low_complexity 1 23 0 235 171 43 14 chr12 128527278 128527348 -15755141 - HsTC2a DNA Tc2 -65 677 606 827 152 23 8 chr12 128527360 128527492 -15754997 + AluJo SINE Alu 2 135 -177 26 0 0 0 chr12 128527492 128527518 -15754971 + AT_rich Low_complexity Low_complexity 1 26 0 1344 247 123 56 chr12 128527518 128527826 -15754663 - HsTC2a DNA Tc2 -1280 620 334 1894 100 13 57 chr12 128527826 128528127 -15754362 - AluSx SINE Alu -24 288 1 1344 247 123 56 chr12 128528127 128528393 -15754096 - HsTC2a DNA Tc2 -1566 334 7 593 333 137 15 chr12 128528662 128528998 -15753491 + L2 LINE L2 2896 3272 0 468 286 59 78 chr12 128529278 128529533 -15752956 + L2 LINE L2 3022 3271 -1 312 197 92 26 chr12 128530059 128530135 -15752354 + L2 LINE L2 3227 3307 -6 358 240 115 0 chr12 128530141 128530237 -15752252 - MIR SINE MIR -129 133 27 639 192 18 0 chr12 128530343 128530510 -15751979 + CT-rich Low_complexity Low_complexity 1 170 0 2262 89 0 7 chr12 128531144 128531448 -15751041 - AluSg SINE Alu -8 302 1 470 273 97 7 chr12 128531597 128531751 -15750738 - MIR SINE MIR -69 193 26 331 233 0 0 chr12 128531919 128531979 -15750510 + MER5B DNA MER1_type 11 70 -108 4696 64 2 24 chr12 128532026 128532649 -15749840 - L1PB1 LINE L1 0 6151 5543 781 83 58 8 chr12 128532652 128532772 -15749717 + L1PB1 LINE L1 5386 5511 -640 267 224 0 17 chr12 128532776 128532834 -15749655 + MER5B DNA MER1_type 121 177 -1 398 154 39 13 chr12 128532994 128533072 -15749417 - L1MB5 LINE L1 -256 5928 5849 1075 160 39 10 chr12 128533073 128533279 -15749210 + L1MB5 LINE L1 5955 6166 -8 915 117 0 29 chr12 128533292 128533429 -15749060 + FLAM_C SINE Alu 1 133 0 445 299 181 0 chr12 128534190 128534411 -15748078 + MIR SINE MIR 1 261 -1 702 259 88 29 chr12 128535105 128535500 -15746989 + L2 LINE L2 2621 3033 -239 678 227 155 16 chr12 128535500 128535924 -15746565 - MLT1G1 LTR MaLR 0 595 1 417 329 80 51 chr12 128535924 128536161 -15746328 + L2 LINE L2 3029 3272 0 391 296 88 29 chr12 128536213 128536461 -15746028 - Charlie8 DNA MER1_type -1010 1407 74 198 71 0 0 chr12 128536464 128536492 -15745997 + (CA)n Simple_repeat Simple_repeat 1 28 0 293 68 23 0 chr12 128536492 128536536 -15745953 + (GA)n Simple_repeat Simple_repeat 1 45 0 1991 120 7 3 chr12 128536599 128536891 -15745598 + AluSx SINE Alu 1 293 -19 312 242 26 153 chr12 128537097 128537171 -15745318 + L2 LINE L2 3143 3225 -88 2330 76 7 0 chr12 128537171 128537472 -15745017 - AluY SINE Alu -8 303 1 312 242 26 153 chr12 128537472 128537587 -15744902 + L2 LINE L2 3225 3308 -5 1103 125 109 22 chr12 128538357 128538541 -15743948 - MER20 DNA MER1_type 0 219 20 456 19 0 0 chr12 128538560 128538613 -15743876 + (CA)n Simple_repeat Simple_repeat 1 53 0 515 299 62 45 chr12 128538702 128538946 -15743543 - MIR SINE MIR -10 252 5 1143 136 0 2 chr12 128539128 128539665 -15742824 + (CAT)n Simple_repeat Simple_repeat 1 536 0 274 310 11 11 chr12 128540072 128540159 -15742330 - MIR3 SINE MIR -41 167 81 2419 118 13 3 chr12 128540177 128540549 -15741940 - L1PB1 LINE L1 0 6151 5776 327 200 93 0 chr12 128540549 128540616 -15741873 + L1MC4 LINE L1 6613 6689 -1353 226 105 26 0 chr12 128540616 128540654 -15741835 + L1P5 LINE L1 5776 5814 -337 310 261 14 0 chr12 128540658 128540727 -15741762 - L1MCa LINE L1 -4362 2064 1995 601 86 0 0 chr12 128540746 128540827 -15741662 - L1P5 LINE L1 -360 5791 5711 222 37 0 0 chr12 128540892 128540919 -15741570 + (TTA)n Simple_repeat Simple_repeat 3 29 0 935 185 135 15 chr12 128540951 128541151 -15741338 - MER58A DNA MER1_type 0 224 1 644 299 48 59 chr12 128541218 128541572 -15740917 - MLT1H LTR MaLR -2 547 198 746 186 87 27 chr12 128541629 128541812 -15740677 - MLT1H LTR MaLR -353 196 3 1202 212 4 9 chr12 128542669 128542895 -15739594 + MIR SINE MIR 18 242 -20 1844 148 10 0 chr12 128543004 128543301 -15739188 + AluJb SINE Alu 4 303 -9 627 279 0 0 chr12 128543693 128543833 -15738656 - MIR SINE MIR -71 191 52 1690 181 20 64 chr12 128543966 128544374 -15738115 - MLT1B LTR MaLR 0 390 1 1288 181 0 4 chr12 128544822 128545048 -15737441 + AluJo SINE Alu 1 225 -87 21 0 0 0 chr12 128545086 128545107 -15737382 + AT_rich Low_complexity Low_complexity 1 21 0 396 244 96 51 chr12 128545708 128545864 -15736625 + MIR SINE MIR 19 181 -81 2132 110 0 3 chr12 128545865 128546164 -15736325 - AluSg SINE Alu -12 298 1 554 291 45 6 chr12 128546195 128546374 -15736115 + MIR SINE MIR 61 246 -16 1311 185 106 0 chr12 128546418 128546683 -15735806 - AluJb SINE Alu -19 293 1 541 296 62 0 chr12 128547047 128547226 -15735263 + MIR SINE MIR 53 242 -20 732 150 19 106 chr12 128547579 128547739 -15734750 - MER63A DNA MER1_type 0 210 65 284 279 6 17 chr12 128547808 128547935 -15734554 + T-rich Low_complexity Low_complexity 1 125 0 2289 83 0 0 chr12 128548373 128548663 -15733826 - AluSc SINE Alu -19 290 1 1460 153 0 60 chr12 128549126 128549426 -15733063 - AluJo SINE Alu -10 302 21 474 285 60 74 chr12 128549546 128549885 -15732604 - L1ME4a LINE L1 -94 6027 5694 2429 71 0 0 chr12 128549885 128550195 -15732294 - AluY SINE Alu -1 310 1 474 285 60 74 chr12 128550195 128550273 -15732216 - L1ME4a LINE L1 -427 5694 5616 1090 175 25 15 chr12 128550785 128550985 -15731504 + MER63A DNA MER1_type 9 210 0 725 278 73 21 chr12 128551190 128551424 -15731065 + MIR SINE MIR 13 258 -4 817 211 131 58 chr12 128552344 128552399 -15730090 - MER46C DNA MER2_type -3 335 285 221 0 35 0 chr12 128552399 128552428 -15730061 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 817 211 131 58 chr12 128552428 128552684 -15729805 - MER46C DNA MER2_type -53 285 1 2105 94 3 3 chr12 128553266 128553552 -15728937 + AluSp SINE Alu 1 286 -27 635 222 272 0 chr12 128553606 128553786 -15728703 - MIR SINE MIR -18 244 16 27 29 0 0 chr12 128554201 128554235 -15728254 + AT_rich Low_complexity Low_complexity 1 34 0 582 250 98 57 chr12 128554301 128554545 -15727944 - L2 LINE L2 -49 3264 3011 588 274 57 52 chr12 128555146 128555394 -15727095 - MIR SINE MIR -2 260 12 185 222 0 0 chr12 128555426 128555462 -15727027 - MIR SINE MIR -162 100 65 482 284 62 8 chr12 128555483 128555770 -15726719 - MLT1I LTR MaLR -19 390 72 2146 86 0 14 chr12 128556899 128557191 -15725298 - AluSq SINE Alu -12 301 14 233 269 30 0 chr12 128557297 128557364 -15725125 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 1204 193 53 82 chr12 128557440 128557782 -15724707 + MER46C DNA MER2_type 2 333 -5 908 154 18 24 chr12 128557844 128558013 -15724476 - MER69A DNA AcHobo 0 177 10 324 262 131 0 chr12 128558013 128558135 -15724354 + MIR SINE MIR 97 234 -28 189 74 0 0 chr12 128559067 128559094 -15723395 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 1761 162 0 23 chr12 128559139 128559448 -15723041 + AluJo SINE Alu 1 302 -10 555 241 42 37 chr12 128559837 128560028 -15722461 - MIR SINE MIR -31 231 40 469 259 58 36 chr12 128560417 128560556 -15721933 + MIR3 SINE MIR 13 154 -54 593 239 80 12 chr12 128560697 128560860 -15721629 - Charlie8 DNA MER1_type -2152 265 92 279 292 56 11 chr12 128561268 128561357 -15721132 - MIR3 SINE MIR -28 180 88 1777 144 7 26 chr12 128561459 128561765 -15720724 + AluSx SINE Alu 6 305 -7 260 337 22 11 chr12 128562726 128562815 -15719674 + MIR SINE MIR 26 115 -147 282 355 60 6 chr12 128563204 128563370 -15719119 - MARNA DNA Mariner -328 258 84 203 204 19 0 chr12 128563553 128563607 -15718882 + CT-rich Low_complexity Low_complexity 4 58 0 24 0 0 0 chr12 128564117 128564141 -15718348 + AT_rich Low_complexity Low_complexity 1 24 0 2016 125 3 0 chr12 128564141 128564430 -15718059 + AluSx SINE Alu 1 290 -22 607 148 35 0 chr12 128564442 128564557 -15717932 - Charlie5 DNA MER1_type -142 2470 2352 1051 170 116 39 chr12 128564561 128564820 -15717669 - L1MB7 LINE L1 -10 6174 5896 1479 198 3 32 chr12 128564888 128565202 -15717287 + AluJb SINE Alu 1 305 -7 1137 128 0 0 chr12 128566002 128566182 -15716307 + (TA)n Simple_repeat Simple_repeat 1 180 0 864 142 0 0 chr12 128566182 128566309 -15716180 - FRAM SINE Alu -11 165 39 343 258 146 103 chr12 128566332 128566453 -15716036 - L2 LINE L2 -1 3312 3198 1761 181 0 10 chr12 128566453 128566763 -15715726 + AluJo SINE Alu 1 307 -5 2097 112 0 0 chr12 128566773 128567059 -15715430 + AluSc SINE Alu 6 291 -18 343 258 146 103 chr12 128567059 128567228 -15715261 - L2 LINE L2 -123 3190 2998 * 353 317 55 12 chr12 128567224 128567388 -15715101 - L2 LINE L2 -468 2846 2676 476 229 112 104 chr12 128567750 128567890 -15714599 + Charlie8 DNA MER1_type 26 170 -171 718 229 0 0 chr12 128567890 128568021 -15714468 + FLAM_C SINE Alu 1 131 -2 476 229 112 104 chr12 128568021 128568129 -15714360 + Charlie8 DNA MER1_type 170 276 -65 321 26 0 0 chr12 128568212 128568250 -15714239 + (ATG)n Simple_repeat Simple_repeat 2 39 0 741 242 108 11 chr12 128568291 128568477 -15714012 - MIR SINE MIR -55 207 4 391 364 12 12 chr12 128568603 128568776 -15713713 + L2 LINE L2 2580 2752 -562 445 261 0 42 chr12 128568916 128569035 -15713454 + L2 LINE L2 2949 3062 -210 1115 264 66 43 chr12 128569143 128569583 -15712906 - MLT1J LTR MaLR -33 478 29 304 359 92 0 chr12 128570901 128571032 -15711457 - L2 LINE L2 -7 3265 3123 902 264 108 20 chr12 128571861 128572186 -15710303 - MLT1C LTR MaLR 0 505 103 7157 129 33 34 chr12 128572186 128572735 -15709754 + Tigger3b DNA MER2_type 1 549 -2479 1981 131 0 37 chr12 128572735 128573056 -15709433 - AluSq SINE Alu -4 309 1 7157 129 33 34 chr12 128573056 128573732 -15708757 + Tigger3b DNA MER2_type 549 1225 -6 589 119 28 55 chr12 128573738 128573847 -15708642 - MLT1C LTR MaLR -361 106 1 1733 152 0 30 chr12 128573893 128574196 -15708293 - AluJb SINE Alu -18 294 1 383 249 160 12 chr12 128574212 128574405 -15708084 - Charlie8 DNA MER1_type -2152 265 84 304 339 35 40 chr12 128574544 128574661 -15707828 - L2 LINE L2 -433 2881 2764 1734 177 0 0 chr12 128574661 128574961 -15707528 - AluSx SINE Alu 0 312 13 304 339 35 40 chr12 128574961 128575017 -15707472 - L2 LINE L2 -550 2764 2709 833 281 33 0 chr12 128575336 128575546 -15706943 - MIR SINE MIR 0 262 46 1857 139 3 23 chr12 128575558 128575860 -15706629 - AluJo SINE Alu -15 297 2 206 312 39 52 chr12 128576074 128576151 -15706338 - L2 LINE L2 -249 3064 2989 222 351 39 0 chr12 128576281 128576358 -15706131 - L2 LINE L2 -528 2786 2707 358 221 202 29 chr12 128576851 128576955 -15705534 + MIR SINE MIR 23 144 -118 509 285 48 21 chr12 128576968 128577154 -15705335 + MIR SINE MIR 21 211 -51 215 289 8 86 chr12 128577142 128577270 -15705219 + MIR SINE MIR 133 250 -12 * 284 273 0 57 chr12 128577872 128577960 -15704529 + MER5A DNA MER1_type 37 119 -70 417 39 0 0 chr12 128577969 128578020 -15704469 + (TG)n Simple_repeat Simple_repeat 2 52 0 2025 125 7 0 chr12 128578035 128578330 -15704159 - AluSx SINE Alu -15 297 1 237 108 0 0 chr12 128578423 128578460 -15704029 + (TG)n Simple_repeat Simple_repeat 1 37 0 429 279 8 16 chr12 128578464 128578586 -15703903 + MER5A DNA MER1_type 63 183 -6 2050 118 3 0 chr12 128579107 128579395 -15703094 - AluSx SINE Alu -10 302 14 268 301 9 71 chr12 128579400 128579513 -15702976 - L2 LINE L2 -7 3306 3201 940 236 76 2 chr12 128579526 128579904 -15702585 - Charlie4a DNA MER1_type -2 506 24 428 290 27 65 chr12 128580034 128580220 -15702269 - L2 LINE L2 -243 3029 2851 585 335 23 28 chr12 128581777 128581992 -15700497 - MIR SINE MIR -32 230 17 892 320 34 27 chr12 128582402 128582814 -15699675 - L2 LINE L2 0 3313 2899 239 247 57 113 chr12 128583068 128583262 -15699227 - L2 LINE L2 -58 3214 3032 694 112 0 0 chr12 128583279 128583377 -15699112 - AluJ/FRAM SINE Alu -1 311 214 777 189 0 40 chr12 128583385 128583533 -15698956 - FLAM_C SINE Alu -1 142 1 735 262 45 5 chr12 128583567 128583769 -15698720 - MIR SINE MIR -11 251 42 2319 224 12 0 chr12 128583773 128584272 -15698217 + L1PA15-16 LINE L1 2243 2747 -4102 6900 79 9 7 chr12 128584274 128585996 -15696493 + L1PA14 LINE L1 4432 6158 -3 182 283 152 26 chr12 128586014 128586205 -15696284 - L2 LINE L2 -337 2977 2763 2449 46 30 16 chr12 128586211 128586538 -15695951 - AluY SINE Alu 0 332 2 186 313 120 27 chr12 128586579 128586729 -15695760 - L2 LINE L2 -452 2862 2699 354 291 47 16 chr12 128586787 128586914 -15695575 - MIR SINE MIR -6 256 126 624 289 43 30 chr12 128587774 128588009 -15694480 - MIR SINE MIR -3 259 22 379 288 46 26 chr12 128588575 128588728 -15693761 - L2 LINE L2 0 3313 3158 287 174 290 14 chr12 128589696 128589765 -15692724 - L2 LINE L2 -43 3270 3183 420 251 145 6 chr12 128589897 128590052 -15692437 + MER5A DNA MER1_type 4 183 -6 320 314 88 42 chr12 128590068 128590307 -15692182 - L2 LINE L2 -191 3081 2832 357 24 0 0 chr12 128590964 128591006 -15691483 + (TTA)n Simple_repeat Simple_repeat 3 44 0 39456 82 9 6 chr12 128591006 128597116 -15685373 - L1PA7 LINE L1 -18 6136 11 12264 84 10 0 chr12 128597125 128598712 -15683777 - L1P3 LINE L1 -4858 1603 1 299 380 0 0 chr12 128599673 128599802 -15682687 - MIR SINE MIR 0 262 134 318 167 0 0 chr12 128599848 128599908 -15682581 + (TGGG)n Simple_repeat Simple_repeat 1 60 0 963 106 11 6 chr12 128599908 128600087 -15682402 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 615 231 8 8 chr12 128600491 128600612 -15681877 - L2 LINE L2 0 3313 3193 1728 144 7 47 chr12 128601220 128601369 -15681120 + AluJo SINE Alu 1 134 -178 1777 96 4 4 chr12 128601369 128601608 -15680881 + AluSg/x SINE Alu 72 310 0 1728 144 7 47 chr12 128601608 128601757 -15680732 + AluJo SINE Alu 134 287 -25 522 288 116 54 chr12 128601991 128602710 -15679779 - L2 LINE L2 -174 3098 2306 206 211 0 0 chr12 128602789 128602827 -15679662 + GA-rich Low_complexity Low_complexity 4 41 0 2155 130 0 7 chr12 128602890 128603191 -15679298 + AluSx SINE Alu 1 299 -13 354 324 34 14 chr12 128603194 128603342 -15679147 - MIR SINE MIR -5 257 107 552 233 83 33 chr12 128603516 128603696 -15678793 - MIR SINE MIR -41 221 33 310 215 254 136 chr12 128604161 128604338 -15678151 - MER58C DNA MER1_type -15 200 3 588 305 16 32 chr12 128604686 128604873 -15677616 - MIR SINE MIR -10 252 69 472 315 56 37 chr12 128605299 128605515 -15676974 - MIR SINE MIR -2 260 41 351 227 10 41 chr12 128605898 128605995 -15676494 + L2 LINE L2 3159 3252 -61 1071 117 0 0 chr12 128606027 128606207 -15676282 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 456 252 266 27 chr12 128606669 128606891 -15675598 + MLT1L LTR MaLR 23 297 -318 2246 92 13 16 chr12 128606893 128607198 -15675291 + AluSx SINE Alu 1 304 -8 181 333 0 0 chr12 128607995 128608046 -15674443 - L2 LINE L2 -21 3292 3242 322 316 105 23 chr12 128608084 128608217 -15674272 + MIR SINE MIR 5 148 -114 2188 101 3 10 chr12 128608244 128608541 -15673948 + AluSx SINE Alu 1 295 -17 265 245 0 0 chr12 128608675 128608728 -15673761 - LTR67 LTR ERVL -3 554 502 218 219 0 0 chr12 128608946 128608987 -15673502 - L2 LINE L2 -221 3051 3011 * 255 250 73 0 chr12 128608985 128609053 -15673436 - MIR3 SINE MIR -50 158 86 1203 252 61 141 chr12 128609294 128610045 -15672444 + MER21B LTR ERV1 22 712 -151 1104 294 94 33 chr12 128610171 128610661 -15671828 + MLT1K LTR MaLR 69 588 0 659 273 99 24 chr12 128611002 128611255 -15671234 + Charlie7 DNA MER1_type 1 272 -2340 286 266 13 13 chr12 128612184 128612263 -15670226 + MIR3 SINE MIR 104 182 -26 228 377 33 69 chr12 128612309 128612702 -15669787 - L2 LINE L2 -22 3250 2872 443 240 10 18 chr12 128612861 128612987 -15669502 + MER33 DNA MER1_type 1 96 -99 * 5476 142 11 48 chr12 128612976 128613776 -15668713 + MER49 LTR ERV1 5 766 -157 2500 75 3 0 chr12 128613776 128614084 -15668405 + AluY SINE Alu 1 309 -2 5476 142 11 48 chr12 128614084 128614230 -15668259 + MER49 LTR ERV1 766 916 -7 1326 134 29 4 chr12 128614234 128614472 -15668017 + MER33 DNA MER1_type 81 324 0 2945 94 12 17 chr12 128614609 128615023 -15667466 + L1PA13 LINE L1 5752 6163 0 180 0 0 0 chr12 128615323 128615343 -15667146 + (TG)n Simple_repeat Simple_repeat 2 21 0 861 245 11 82 chr12 128615409 128615604 -15666885 + MIR SINE MIR 12 184 -78 537 208 126 25 chr12 128615604 128615763 -15666726 - MER5B DNA MER1_type -3 175 1 861 245 11 82 chr12 128615763 128615836 -15666653 + MIR SINE MIR 184 261 -1 450 262 124 0 chr12 128616503 128616648 -15665841 - MIR SINE MIR 0 262 100 346 250 60 73 chr12 128616648 128616986 -15665503 - MLT1K LTR MaLR -18 570 201 233 182 0 0 chr12 128617312 128617356 -15665133 + L2 LINE L2 3268 3311 -2 193 336 29 43 chr12 128617512 128617652 -15664837 - L2 LINE L2 -216 3056 2919 3916 186 21 33 chr12 128617674 128618497 -15663992 - L1MB4 LINE L1 0 6180 5368 289 338 7 58 chr12 128618623 128618762 -15663727 - L2 LINE L2 -650 2664 2533 306 288 98 11 chr12 128618770 128618954 -15663535 + L1MC4a LINE L1 5721 5920 -1888 402 238 195 0 chr12 128619102 128619266 -15663223 + L2 LINE L2 3113 3308 -5 1954 158 0 7 chr12 128620004 128620307 -15662182 - AluJo SINE Alu -11 301 1 219 225 36 27 chr12 128620333 128620444 -15662045 + (TA)n Simple_repeat Simple_repeat 1 112 0 2004 139 10 3 chr12 128620700 128621001 -15661488 - AluSx SINE Alu -9 303 1 2300 95 3 3 chr12 128621633 128621938 -15660551 + AluSg SINE Alu 1 305 -5 1577 219 63 0 chr12 128622040 128622355 -15660134 - MER58B DNA MER1_type -6 335 1 23 0 0 0 chr12 128622380 128622403 -15660086 + AT_rich Low_complexity Low_complexity 1 23 0 2263 99 3 0 chr12 128622403 128622720 -15659769 + AluSx SINE Alu 1 312 0 1707 177 0 7 chr12 128622818 128623089 -15659400 - AluJo SINE Alu -43 269 1 2229 108 0 13 chr12 128623319 128623455 -15659034 + AluSx SINE Alu 1 137 -175 2595 37 0 3 chr12 128623455 128623751 -15658738 + AluY SINE Alu 1 295 -16 2229 108 0 13 chr12 128623751 128623921 -15658568 + AluSx SINE Alu 137 303 -9 2227 109 3 3 chr12 128624419 128624722 -15657767 - AluSp SINE Alu -10 303 1 1069 203 68 5 chr12 128624949 128625226 -15657263 + L1M3 LINE L1 5431 5758 -406 357 243 9 45 chr12 128625246 128625357 -15657132 - MLT1K LTR MaLR -36 552 446 1764 261 85 103 chr12 128625395 128625934 -15656555 + L1M4 LINE L1 2610 3157 -2989 2020 124 0 10 chr12 128625934 128626225 -15656264 + AluSq SINE Alu 1 288 -25 1764 261 85 103 chr12 128626225 128627585 -15654904 + L1M4 LINE L1 3157 4540 -1606 1563 99 218 8 chr12 128627585 128627837 -15654652 + AluSg1 SINE Alu 1 305 -4 1764 261 85 103 chr12 128627837 128628390 -15654099 + L1M4 LINE L1 4540 5018 -1128 2223 117 17 0 chr12 128628390 128628688 -15653801 + AluSx SINE Alu 1 303 -9 1764 261 85 103 chr12 128628688 128628762 -15653727 + L1M4 LINE L1 5018 5092 -1054 2000 143 76 28 chr12 128629185 128629541 -15652948 - THE1C LTR MaLR 0 375 3 2075 203 93 94 chr12 128629698 128629850 -15652639 - MER63D DNA MER1_type 0 1061 910 1728 181 27 0 chr12 128629850 128630165 -15652324 + AluSx SINE Alu 1 312 0 2075 203 93 94 chr12 128630165 128631026 -15651463 - MER63D DNA MER1_type -151 910 49 31 0 0 0 chr12 128631046 128631077 -15651412 + AT_rich Low_complexity Low_complexity 1 31 0 602 144 40 8 chr12 128631089 128631214 -15651275 + L1MDa LINE L1 2340 2468 -4072 2172 84 11 0 chr12 128631214 128631487 -15651002 + AluSq SINE Alu 1 276 -37 234 133 17 33 chr12 128631488 128631548 -15650941 + GA-rich Low_complexity Low_complexity 1 59 0 231 213 0 32 chr12 128631548 128631642 -15650847 + L1MDa LINE L1 2441 2531 -4009 871 169 7 0 chr12 128631642 128631784 -15650705 - MLT1B LTR MaLR -246 144 2 318 50 0 0 chr12 128631809 128631849 -15650640 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2475 61 0 0 chr12 128632418 128632711 -15649778 + AluY SINE Alu 1 293 -18 691 319 107 28 chr12 128632854 128632998 -15649491 - L2 LINE L2 -2 3311 3180 422 73 0 15 chr12 128632998 128633066 -15649423 + (ATG)n Simple_repeat Simple_repeat 2 68 0 691 319 107 28 chr12 128633066 128633313 -15649176 - L2 LINE L2 -133 3180 2889 773 269 28 14 chr12 128633613 128633825 -15648664 - MIR SINE MIR -3 259 45 180 195 0 24 chr12 128634076 128634117 -15648372 - MER5B DNA MER1_type -124 54 15 219 197 164 16 chr12 128635350 128635411 -15647078 + MER5A DNA MER1_type 2 71 -118 1228 165 9 5 chr12 128635425 128635643 -15646846 + MER20 DNA MER1_type 1 219 0 261 290 0 0 chr12 128635795 128635864 -15646625 + MIR SINE MIR 81 149 -59 917 255 92 5 chr12 128635937 128636328 -15646161 + MER113 DNA MER1_type? 2 516 -5 354 316 65 7 chr12 128636333 128636472 -15646017 + MIR SINE MIR 9 155 -107 1636 209 89 84 chr12 128636473 128637038 -15645451 + MLT1F1 LTR MaLR 9 564 -3 407 298 77 75 chr12 128637165 128637277 -15645212 + HAL1 LINE L1 825 935 -1572 1879 166 7 0 chr12 128637277 128637566 -15644923 - AluJb SINE Alu -21 291 1 407 298 77 75 chr12 128637566 128637625 -15644864 + HAL1 LINE L1 935 992 -1515 2331 91 0 28 chr12 128637625 128637944 -15644545 - AluY SINE Alu -1 310 1 407 298 77 75 chr12 128637944 128638241 -15644248 + HAL1 LINE L1 992 1295 -1212 305 232 211 14 chr12 128638644 128638885 -15643604 + L1ME3 LINE L1 4217 4504 -1642 1345 81 23 77 chr12 128639015 128639236 -15643253 + L1PA11 LINE L1 5964 6172 -2 529 90 26 0 chr12 128639362 128639440 -15643049 - MADE1 DNA Mariner 0 80 1 664 310 87 32 chr12 128639457 128639731 -15642758 + L1ME3 LINE L1 4944 5202 -960 306 91 15 30 chr12 128639731 128639797 -15642692 + L1PA8 LINE L1 6108 6172 0 664 310 87 32 chr12 128639797 128640396 -15642093 + L1ME3 LINE L1 5202 5874 -288 2239 116 39 30 chr12 128640995 128641356 -15641133 + THE1B LTR MaLR 1 364 0 273 217 29 0 chr12 128641571 128641640 -15640849 + HAL1b LINE L1 755 825 -523 289 318 71 39 chr12 128642223 128642377 -15640112 + L2 LINE L2 2909 3067 -246 317 270 60 0 chr12 128642408 128642508 -15639981 - L2 LINE L2 -6 3307 3202 270 261 0 57 chr12 128642589 128642677 -15639812 + L2 LINE L2 3188 3270 -43 656 191 52 0 chr12 128643058 128643173 -15639316 + FLAM_A SINE Alu 3 123 -10 21 36 0 0 chr12 128643174 128643202 -15639287 + AT_rich Low_complexity Low_complexity 1 28 0 490 302 155 11 chr12 128643210 128643480 -15639009 + L2 LINE L2 2750 3051 -262 827 253 124 24 chr12 128643493 128643872 -15638617 - LTR33 LTR ERVL -15 506 90 915 163 163 0 chr12 128643876 128644036 -15638453 - MER58A DNA MER1_type -2 222 37 2383 86 0 20 chr12 128644185 128644486 -15638003 - AluSg SINE Alu -15 295 1 244 329 0 49 chr12 128644528 128644610 -15637879 + L2 LINE L2 3163 3240 -32 2242 80 35 3 chr12 128644619 128644905 -15637584 - AluSg SINE Alu -15 295 1 459 0 0 0 chr12 128645368 128645419 -15637070 + (TG)n Simple_repeat Simple_repeat 2 52 0 1855 153 0 11 chr12 128645419 128645700 -15636789 - AluJb SINE Alu -34 278 1 2182 111 37 0 chr12 128646270 128646568 -15635921 + AluSq SINE Alu 1 309 -4 267 31 0 0 chr12 128646568 128646600 -15635889 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 222 118 0 0 chr12 128646636 128646670 -15635819 + (T)n Simple_repeat Simple_repeat 1 34 0 200 35 35 0 chr12 128646909 128646938 -15635551 + (TC)n Simple_repeat Simple_repeat 1 30 0 458 219 233 19 chr12 128647485 128647700 -15634789 + L1ME4a LINE L1 5860 6120 -1 395 299 28 45 chr12 128648180 128648357 -15634132 + MIR SINE MIR 48 221 -41 28 29 0 0 chr12 128648607 128648642 -15633847 + AT_rich Low_complexity Low_complexity 1 35 0 1062 285 67 25 chr12 128648851 128649296 -15633193 - L2 LINE L2 0 3313 2850 915 157 14 0 chr12 128649297 128649473 -15633016 + FRAM SINE Alu 2 179 0 186 250 0 19 chr12 128649677 128649729 -15632760 + MER5A DNA MER1_type 30 80 -109 2463 76 0 3 chr12 128649748 128650049 -15632440 + AluY SINE Alu 1 300 -11 198 361 21 10 chr12 128650051 128650148 -15632341 - MER5A DNA MER1_type -55 134 37 465 280 139 49 chr12 128650150 128650432 -15632057 - L2 LINE L2 -4 3309 2989 2148 93 0 0 chr12 128650432 128650702 -15631787 + AluSg1 SINE Alu 29 298 -11 465 280 139 49 chr12 128650702 128650765 -15631724 - L2 LINE L2 -324 2989 2933 388 264 83 0 chr12 128650876 128650997 -15631492 - L2 LINE L2 -5 3267 3137 360 302 126 0 chr12 128651266 128651425 -15631064 - MIR SINE MIR 0 262 84 242 259 0 0 chr12 128652171 128652225 -15630264 + CT-rich Low_complexity Low_complexity 4 57 0 631 251 49 15 chr12 128654057 128654260 -15628229 + MIR SINE MIR 20 229 -33 762 266 54 34 chr12 128654272 128654569 -15627920 + L2 LINE L2 3011 3313 0 2301 102 0 3 chr12 128655055 128655360 -15627129 - AluSx SINE Alu -8 304 1 213 327 33 67 chr12 128655369 128655519 -15626970 + MIR SINE MIR 107 251 -11 266 262 123 0 chr12 128655805 128655927 -15626562 + MER20B DNA MER1_type 49 185 -598 540 264 23 0 chr12 128656442 128656571 -15625918 - MER91A DNA MER1_type -2 194 63 312 291 16 55 chr12 128656672 128656799 -15625690 - L2 LINE L2 -6 3266 3145 361 250 61 27 chr12 128657075 128657223 -15625266 - MER20B DNA MER1_type -623 160 8 338 357 66 14 chr12 128657276 128657489 -15625000 + MIR SINE MIR 32 255 -7 2885 256 86 95 chr12 128657700 128657765 -15624724 + HAL1 LINE L1 1 65 -2442 1679 77 17 9 chr12 128657765 128657998 -15624491 + L1MA1 LINE L1 6059 6293 -9 2885 256 86 95 chr12 128657998 128659086 -15623403 + HAL1 LINE L1 65 1161 -1346 2985 128 4 0 chr12 128659086 128659541 -15622948 + L1MB3 LINE L1 5725 6181 -2 2885 256 86 95 chr12 128659541 128659942 -15622547 + HAL1 LINE L1 1161 1540 -967 2598 46 0 7 chr12 128659942 128660245 -15622244 + AluY SINE Alu 1 301 -10 2885 256 86 95 chr12 128660245 128660491 -15621998 + HAL1 LINE L1 1540 1787 -720 377 262 14 28 chr12 128661396 128661537 -15620952 + L1MC5 LINE L1 7793 7931 -30 1695 168 3 52 chr12 128661540 128661868 -15620621 + AluSx SINE Alu 1 312 0 284 215 15 0 chr12 128662133 128662198 -15620291 + L2 LINE L2 2993 3058 -214 234 62 0 0 chr12 128662366 128662398 -15620091 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 316 308 17 8 chr12 128662857 128662977 -15619512 + MER103 DNA DNA 26 146 -20 1728 181 13 3 chr12 128663191 128663500 -15618989 - AluJo SINE Alu 0 312 1 1983 144 10 13 chr12 128663983 128664296 -15618193 - AluJb SINE Alu 0 312 1 243 61 0 0 chr12 128664874 128664907 -15617582 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 202 232 159 0 chr12 128665319 128665388 -15617101 + MIR SINE MIR 183 262 0 263 270 25 80 chr12 128665425 128665625 -15616864 + L1ME4a LINE L1 5754 5942 -179 501 281 27 7 chr12 128665759 128665905 -15616584 + MIR SINE MIR 21 169 -93 255 215 0 15 chr12 128665941 128666006 -15616483 + MIR SINE MIR 149 212 -50 1464 137 108 54 chr12 128666171 128666449 -15616040 - AluJb SINE Alu -15 297 5 272 215 77 0 chr12 128667388 128667453 -15615036 - L2 LINE L2 0 3272 3203 233 171 24 0 chr12 128667465 128667506 -15614983 + THE1C LTR MaLR 332 373 -2 10309 108 50 9 chr12 128667508 128669026 -15613463 + THE1C-int LTR MaLR 1 1580 0 2180 125 53 14 chr12 128669026 128669387 -15613102 + THE1C LTR MaLR 1 375 0 3882 173 28 11 chr12 128669387 128670196 -15612293 - L1MB7 LINE L1 -160 6024 5200 225 292 241 7 chr12 128670365 128670502 -15611987 + MIR SINE MIR 29 197 -65 240 191 0 106 chr12 128670509 128670562 -15611927 - MIR SINE MIR -53 209 169 2172 121 0 0 chr12 128670562 128670860 -15611629 - AluY SINE Alu -13 298 1 240 191 0 106 chr12 128670860 128670900 -15611589 - MIR SINE MIR -93 169 126 1902 147 29 13 chr12 128670900 128671034 -15611455 + AluJb SINE Alu 1 131 -181 2415 69 3 13 chr12 128671034 128671338 -15611151 + AluY SINE Alu 1 301 -10 1902 147 29 13 chr12 128671338 128671510 -15610979 + AluJb SINE Alu 131 312 0 1294 51 0 0 chr12 128671528 128671686 -15610803 - L1PA6 LINE L1 0 6154 5997 324 314 73 8 chr12 128671846 128671970 -15610519 - L2 LINE L2 -5 3267 3136 1836 151 42 3 chr12 128672099 128672383 -15610106 + AluJo SINE Alu 1 295 -17 1799 120 3 45 chr12 128672705 128672979 -15609510 + AluSx SINE Alu 20 283 -29 225 0 0 0 chr12 128672979 128673004 -15609485 + (GA)n Simple_repeat Simple_repeat 1 25 0 1799 120 3 45 chr12 128673004 128673020 -15609469 + AluSx SINE Alu 283 298 -14 500 230 33 20 chr12 128673295 128673447 -15609042 + MIR SINE MIR 109 262 0 265 351 111 22 chr12 128673519 128673889 -15608600 + L2 LINE L2 2817 3219 -94 774 214 11 50 chr12 128673966 128674148 -15608341 - MER5B DNA MER1_type 0 178 4 340 226 77 83 chr12 128675123 128675232 -15607257 + L1MD2 LINE L1 5999 6107 -252 2700 100 5 18 chr12 128675232 128675612 -15606877 + THE1C LTR MaLR 1 375 0 10096 105 42 45 chr12 128675612 128676119 -15606370 + THE1C-int LTR MaLR 1 508 -1072 2271 121 3 0 chr12 128676119 128676426 -15606063 + AluSp SINE Alu 1 308 -5 10096 105 42 45 chr12 128676426 128677502 -15604987 + THE1C-int LTR MaLR 508 1580 0 2673 106 5 16 chr12 128677502 128677881 -15604608 + THE1C LTR MaLR 1 375 0 340 226 77 83 chr12 128677881 128677926 -15604563 + L1MD2 LINE L1 6105 6156 -203 1894 174 0 0 chr12 128677926 128678224 -15604265 + AluJb SINE Alu 1 298 -14 340 226 77 83 chr12 128678224 128678247 -15604242 + L1MD2 LINE L1 6156 6178 -181 28 61 0 0 chr12 128678260 128678309 -15604180 + AT_rich Low_complexity Low_complexity 1 49 0 787 137 29 0 chr12 128678323 128678462 -15604027 + Charlie5 DNA MER1_type 2482 2624 0 227 189 0 0 chr12 128678594 128678647 -15603842 - L2 LINE L2 0 3313 3261 256 232 37 37 chr12 128678654 128678736 -15603753 - L2 LINE L2 -224 3089 3008 789 296 74 10 chr12 128678737 128679146 -15603343 + L1P3 LINE L1 5379 5826 -346 2040 133 0 32 chr12 128679443 128679612 -15602877 - AluJo SINE Alu -7 305 149 1911 143 34 3 chr12 128679612 128679905 -15602584 - AluJo SINE Alu -9 303 2 2040 133 0 32 chr12 128679905 128680050 -15602439 - AluJo SINE Alu -163 149 1 688 235 30 21 chr12 128680128 128680323 -15602166 + MIR SINE MIR 66 262 0 251 284 0 0 chr12 128680800 128680867 -15601622 + L1ME4a LINE L1 5965 6031 -90 1021 163 0 65 chr12 128682021 128682205 -15600284 + AluJo SINE Alu 29 200 -112 486 304 131 14 chr12 128682301 128682515 -15599974 - MIR SINE MIR -3 259 21 1931 154 0 33 chr12 128682635 128682940 -15599549 + AluJb SINE Alu 1 295 -17 2097 158 26 68 chr12 128682964 128683432 -15599057 + L1MB3 LINE L1 5735 6182 -1 311 274 0 20 chr12 128683461 128683563 -15598926 + MER5B DNA MER1_type 74 173 -5 1076 151 0 0 chr12 128683929 128684088 -15598401 - FRAM SINE Alu -4 172 14 720 271 103 46 chr12 128684201 128684726 -15597763 - L1MC4 LINE L1 0 8042 7488 2078 141 10 0 chr12 128684757 128685063 -15597426 + AluSq SINE Alu 1 309 -4 601 123 19 0 chr12 128685079 128685185 -15597304 + GA-rich Low_complexity Low_complexity 3 110 0 246 308 0 0 chr12 128685175 128685240 -15597249 - L1MD3 LINE L1 -434 7561 7497 * 264 268 0 14 chr12 128685412 128685483 -15597006 - L2 LINE L2 0 3313 3244 199 217 50 0 chr12 128685718 128685778 -15596711 - L2 LINE L2 -62 3251 3189 568 164 0 117 chr12 128685778 128685906 -15596583 - MER58A DNA MER1_type 0 224 112 2102 197 47 2 chr12 128685906 128686307 -15596182 - MSTB LTR MaLR 0 426 8 2128 140 6 148 chr12 128686314 128686718 -15595771 + MER66A LTR ERV1 27 487 9 2425 90 0 7 chr12 128686718 128687028 -15595461 - AluSq SINE Alu -5 308 1 2128 140 6 148 chr12 128687028 128687060 -15595429 + MER66A LTR ERV1 487 379 -99 2577 65 0 3 chr12 128687060 128687367 -15595122 - AluY SINE Alu -5 306 1 2128 140 6 148 chr12 128687367 128687456 -15595033 + MER66A LTR ERV1 378 478 0 676 202 9 0 chr12 128687466 128687580 -15594909 - MER58A DNA MER1_type 0 117 3 460 299 78 45 chr12 128687616 128687695 -15594794 - L2 LINE L2 -5 3267 3192 2391 108 0 0 chr12 128687695 128688000 -15594489 + AluSx SINE Alu 1 305 -7 460 299 78 45 chr12 128688000 128688164 -15594325 - L2 LINE L2 -80 3192 3016 247 139 116 0 chr12 128688500 128688543 -15593946 - MLT1I LTR MaLR -3 406 359 258 290 0 0 chr12 128688625 128688687 -15593802 - MER58 DNA MER1_type 0 2420 2359 243 175 0 0 chr12 128688713 128688753 -15593736 - MER58 DNA MER1_type -2152 268 229 472 114 14 0 chr12 128688753 128688823 -15593666 - MSTA LTR MaLR 0 428 358 228 188 16 62 chr12 128688880 128688944 -15593545 - MLT1J1 LTR MaLR -120 326 266 1248 153 49 54 chr12 128688963 128689186 -15593303 - MER58A DNA MER1_type 0 224 3 361 297 97 32 chr12 128689188 128689343 -15593146 - MLT1I LTR MaLR -174 235 71 268 196 72 62 chr12 128689840 128689937 -15592552 - 7SK RNA RNA -73 120 23 706 267 17 11 chr12 128690239 128690415 -15592074 + MIR SINE MIR 14 190 -72 1015 199 0 18 chr12 128690723 128690944 -15591545 - MIR SINE MIR -31 231 15 700 243 80 64 chr12 128691101 128691352 -15591137 - MER102b DNA MER1_type -1 340 86 342 238 96 19 chr12 128691707 128691835 -15590654 + MIR SINE MIR 50 181 -27 1744 160 10 34 chr12 128691865 128692159 -15590330 + AluJo SINE Alu 1 287 -25 189 147 0 0 chr12 128692222 128692256 -15590233 + (GA)n Simple_repeat Simple_repeat 2 35 0 328 294 24 40 chr12 128692402 128692528 -15589961 - MER5A DNA MER1_type -5 184 61 1844 159 13 16 chr12 128692897 128693206 -15589283 + AluJo SINE Alu 1 308 -4 209 360 0 12 chr12 128693799 128693885 -15588604 + MER5A DNA MER1_type 4 88 -101 * 213 321 0 0 chr12 128693835 128693891 -15588598 - MER5A DNA MER1_type -27 162 107 3872 219 48 12 chr12 128694043 128694855 -15587634 - MER21B LTR ERV1 -4 859 19 296 282 47 0 chr12 128694852 128694937 -15587552 - MER21B LTR ERV1 -756 107 19 * 738 164 0 15 chr12 128695051 128695185 -15587304 - FLAM_A SINE Alu -1 132 1 1014 234 98 49 chr12 128696336 128696681 -15585808 + L1ME LINE L1 5324 5668 -453 686 206 21 113 chr12 128696681 128696746 -15585743 + MER5B DNA MER1_type 1 70 -108 1764 164 0 16 chr12 128696746 128697050 -15585439 + AluJo SINE Alu 2 300 -12 686 206 21 113 chr12 128697050 128697178 -15585311 + MER5B DNA MER1_type 70 176 -2 1014 234 98 49 chr12 128697178 128697317 -15585172 + L1ME LINE L1 5668 5799 -322 839 127 0 0 chr12 128697322 128697440 -15585049 + FLAM_C SINE Alu 1 118 -15 647 235 37 60 chr12 128697471 128697752 -15584737 + L2 LINE L2 2782 3052 -261 2455 81 0 16 chr12 128697903 128698213 -15584276 + AluY SINE Alu 1 305 -6 698 232 92 0 chr12 128698228 128698435 -15584054 + MIR SINE MIR 37 262 0 213 275 113 25 chr12 128698420 128698500 -15583989 + L2 LINE L2 3226 3312 -1 * 2490 74 0 6 chr12 128698711 128699023 -15583466 - AluY SINE Alu -1 310 1 1340 225 128 14 chr12 128700247 128700678 -15581811 - MER113 DNA MER1_type? 0 521 42 2183 118 26 3 chr12 128700740 128701045 -15581444 + AluSx SINE Alu 1 312 0 524 165 0 83 chr12 128701142 128701275 -15581214 + MIR SINE MIR 69 190 -72 2441 68 0 0 chr12 128702054 128702349 -15580140 + AluY SINE Alu 1 295 -16 283 265 76 45 chr12 128702392 128702524 -15579965 - MLT1K LTR MaLR -47 541 406 699 293 11 11 chr12 128702754 128702942 -15579547 - MLT1K LTR MaLR -388 200 13 2499 84 3 3 chr12 128703035 128703346 -15579143 - AluSx SINE Alu -1 311 1 2226 110 0 3 chr12 128704629 128704921 -15577568 - AluSx SINE Alu -16 296 6 1362 210 20 73 chr12 128704951 128705491 -15576998 - MLT1D LTR MaLR -18 487 1 206 242 65 0 chr12 128705524 128705586 -15576903 + L2 LINE L2 2677 2742 -572 802 149 0 30 chr12 128705629 128705763 -15576726 - FLAM_C SINE Alu -3 130 1 2124 56 0 15 chr12 128706175 128706445 -15576044 - L1PA8 LINE L1 -5 6167 5902 1115 279 66 40 chr12 128706445 128706978 -15575511 + L2 LINE L2 2770 3312 -1 532 292 22 7 chr12 128707186 128707323 -15575166 + L2 LINE L2 3134 3272 0 2324 109 0 0 chr12 128707583 128707894 -15574595 + AluSq SINE Alu 1 311 -2 189 0 0 0 chr12 128708422 128708443 -15574046 + (A)n Simple_repeat Simple_repeat 1 21 0 2518 57 0 0 chr12 128708444 128708741 -15573748 + AluY SINE Alu 1 297 -14 524 279 149 5 chr12 128708751 128708973 -15573516 - MIR SINE MIR -1 261 8 2026 135 0 0 chr12 128709196 128709510 -15572979 - AluSx SINE Alu 0 314 1 395 303 111 48 chr12 128709654 128710007 -15572482 - MLT1K LTR MaLR -8 580 206 2260 104 0 32 chr12 128710104 128710420 -15572069 + AluSc SINE Alu 1 306 -3 534 286 81 63 chr12 128710479 128710895 -15571594 + L1MC/D LINE L1 5348 5770 -535 * 605 283 107 72 chr12 128710891 128711403 -15571086 + L1ME LINE L1 2 531 -5539 1307 269 60 90 chr12 128711565 128711679 -15570810 + L1ME LINE L1 572 688 -5573 2262 106 3 0 chr12 128711679 128711980 -15570509 + AluY SINE Alu 1 302 -9 1307 269 60 90 chr12 128711980 128713013 -15569476 + L1ME LINE L1 688 1685 -4576 1246 189 14 40 chr12 128713028 128713208 -15569281 + L1MB3 LINE L1 4594 4766 -1380 1477 184 96 0 chr12 128713208 128713490 -15568999 + AluJo SINE Alu 1 309 -3 1246 189 14 40 chr12 128713490 128713584 -15568905 + L1MB3 LINE L1 4766 4861 -1285 2722 26 16 0 chr12 128713600 128713913 -15568576 - AluYb8 SINE Alu 0 318 1 225 128 43 0 chr12 128713915 128713962 -15568527 - Alu SINE Alu -4 129 81 844 192 71 25 chr12 128713962 128714051 -15568438 - AluJo SINE Alu -97 215 131 224 30 30 0 chr12 128714051 128714084 -15568405 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 844 192 71 25 chr12 128714084 128714192 -15568297 - AluJo SINE Alu -181 131 9 1988 132 14 3 chr12 128714209 128714505 -15567984 - AluJo SINE Alu -13 299 1 1128 184 5 0 chr12 128714505 128714711 -15567778 + L1MB3 LINE L1 4847 5053 -1093 3822 145 31 0 chr12 128714711 128715352 -15567137 + L1MB3 LINE L1 5504 6164 -19 1434 204 53 13 chr12 128715353 128715657 -15566832 + MER74B LTR ERVL 58 373 -249 589 147 11 0 chr12 128715654 128715749 -15566740 + MER74B LTR ERVL 278 373 -249 * 486 141 0 124 chr12 128715731 128715852 -15566637 + MER74A LTR ERVL 210 315 -243 * 1438 233 11 45 chr12 128715849 128716101 -15566388 + MER74B LTR ERVL 278 516 -106 2448 123 11 5 chr12 128716101 128716474 -15566015 - THE1C LTR MaLR 0 375 1 1438 233 11 45 chr12 128716474 128716578 -15565911 + MER74B LTR ERVL 516 622 0 3659 127 15 2 chr12 128716638 128717158 -15565331 + MER1A DNA MER1_type 1 527 0 927 278 8 0 chr12 128717183 128717428 -15565061 + MIR SINE MIR 3 249 -13 984 163 6 12 chr12 128717475 128717641 -15564848 + FAM SINE Alu 1 165 -10 36 23 0 0 chr12 128717641 128717684 -15564805 + AT_rich Low_complexity Low_complexity 1 43 0 600 135 0 87 chr12 128718278 128718404 -15564085 - FLAM_C SINE Alu 0 143 29 625 266 75 18 chr12 128718567 128718793 -15563696 + MIR SINE MIR 10 248 -14 410 332 42 49 chr12 128718796 128719061 -15563428 + L2 LINE L2 2978 3240 -32 2226 147 53 68 chr12 128719324 128719723 -15562766 - L1MB5 LINE L1 -9 6165 5773 1878 154 0 7 chr12 128719723 128720015 -15562474 - AluSx SINE Alu -17 295 6 2226 147 53 68 chr12 128720015 128720084 -15562405 - L1MB5 LINE L1 -401 5773 5704 572 310 120 39 chr12 128720258 128720451 -15562038 - LTR16C LTR ERVL -37 454 278 1949 231 40 67 chr12 128720451 128721078 -15561411 + LTR9 LTR ERV1 3 612 0 572 310 120 39 chr12 128721078 128721242 -15561247 - LTR16C LTR ERVL -213 278 68 2405 84 0 0 chr12 128721509 128721806 -15560683 + AluSq SINE Alu 2 298 -15 260 308 30 23 chr12 128721920 128722053 -15560436 - L1ME3A LINE L1 -10 6160 6027 1448 198 22 99 chr12 128722330 128722432 -15560057 - MLT1A2 LTR MaLR 0 374 266 1922 153 113 40 chr12 128722432 128722831 -15559658 + MSTA LTR MaLR 1 428 0 1448 198 22 99 chr12 128722831 128723133 -15559356 - MLT1A2 LTR MaLR -108 266 1 329 208 78 0 chr12 128723232 128723309 -15559180 + L2 LINE L2 3209 3291 -22 247 344 8 33 chr12 128723449 128723571 -15558918 + MIR SINE MIR 35 153 -55 230 226 6 116 chr12 128724749 128724913 -15557576 - L1ME4a LINE L1 -2 6119 5974 486 250 21 21 chr12 128724954 128725094 -15557395 - MIR SINE MIR -10 252 113 295 225 87 65 chr12 128725445 128725583 -15556906 - L1ME4a LINE L1 -419 5702 5562 222 208 0 0 chr12 128726085 128726133 -15556356 + MER5A DNA MER1_type 137 184 -5 297 320 0 0 chr12 128726145 128726242 -15556247 - L2 LINE L2 -571 2743 2647 1501 50 0 0 chr12 128727533 128727713 -15554776 + AluY SINE Alu 131 310 -1 662 156 0 9 chr12 128727713 128727822 -15554667 - AluJo/FLAM SINE Alu -198 114 7 2524 41 0 7 chr12 128727839 128728132 -15554357 - AluY SINE Alu -16 295 5 2079 123 10 3 chr12 128728142 128728442 -15554047 - AluSx SINE Alu -10 302 1 726 157 0 0 chr12 128729824 128729926 -15552563 - MER7A DNA MER2_type 0 346 245 * 2036 100 74 20 chr12 128729923 128730274 -15552215 - THE1C LTR MaLR -5 370 1 1140 172 54 23 chr12 128730274 128730493 -15551996 - MER7A DNA MER2_type -122 224 1 299 260 203 0 chr12 128730617 128730740 -15551749 - MIR SINE MIR 0 262 115 312 259 111 49 chr12 128731319 128731481 -15551008 + MIR3 SINE MIR 17 188 -20 1884 177 0 3 chr12 128731514 128731814 -15550675 + AluJb SINE Alu 1 299 -13 2412 69 0 0 chr12 128736325 128736631 -15545858 - AluY SINE Alu -5 306 1 645 195 31 8 chr12 128736818 128736946 -15545543 - MIR SINE MIR -21 241 111 3620 139 44 0 chr12 128736948 128737544 -15544945 - L1MA8 LINE L1 -137 6154 5533 820 143 41 0 chr12 128737549 128737696 -15544793 + L1MA8 LINE L1 6128 6280 -11 234 204 0 0 chr12 128737967 128738011 -15544478 + Charlie8 DNA MER1_type 118 161 -2256 312 326 40 17 chr12 128738598 128738773 -15543716 + MER5A DNA MER1_type 3 181 -8 1464 158 31 118 chr12 128741505 128741886 -15540603 + MLT1A1 LTR MaLR 18 365 0 1290 136 27 36 chr12 128742801 128743022 -15539467 - MER20 DNA MER1_type 0 219 1 300 137 0 0 chr12 128746362 128746413 -15536076 + (A)n Simple_repeat Simple_repeat 1 51 0 1728 132 7 65 chr12 128747446 128747785 -15534704 + AluJo SINE Alu 1 321 0 1015 167 0 6 chr12 128747795 128747975 -15534514 + FRAM SINE Alu 1 171 -5 2491 58 0 6 chr12 128748234 128748546 -15533943 - AluY SINE Alu -1 310 1 693 254 53 43 chr12 128749247 128749456 -15533033 - MIR SINE MIR -12 250 40 2336 80 0 0 chr12 128749459 128749761 -15532728 + AluSg SINE Alu 1 302 -8 799 178 0 15 chr12 128750735 128750870 -15531619 + FLAM_A SINE Alu 1 133 0 1085 219 5 5 chr12 128751078 128751283 -15531206 + MER58A DNA MER1_type 19 223 -1 276 273 53 53 chr12 128752402 128752534 -15529955 + L2 LINE L2 3167 3298 -15 764 284 96 38 chr12 128752693 128753087 -15529402 + L1MC4a LINE L1 5520 5936 -1872 1906 132 3 10 chr12 128753100 128753403 -15529086 + AluJb SINE Alu 12 312 0 477 216 39 0 chr12 128753433 128753535 -15528954 + L1M4 LINE L1 14 119 -6423 928 239 7 72 chr12 128753665 128753958 -15528531 + L1M4 LINE L1 120 393 -6149 1795 163 29 46 chr12 128753986 128754081 -15528408 + MER2 DNA MER2_type 1 96 -248 1748 146 36 0 chr12 128754081 128754362 -15528127 + AluJb SINE Alu 1 291 -21 1795 163 29 46 chr12 128754362 128754616 -15527873 + MER2 DNA MER2_type 96 344 0 517 189 42 0 chr12 128754979 128755074 -15527415 - L1M4 LINE L1 -6423 119 21 1788 149 3 3 chr12 128755100 128755389 -15527100 - AluJb SINE Alu -18 294 6 298 310 47 31 chr12 128755446 128755575 -15526914 - L1MC4a LINE L1 -1941 5867 5737 230 295 16 93 chr12 128755828 128755957 -15526532 + L2 LINE L2 3182 3300 -13 1003 263 101 41 chr12 128756670 128756875 -15525614 + L1MC4a LINE L1 5568 5759 -2049 2296 93 0 0 chr12 128756875 128757175 -15525314 + AluSx SINE Alu 1 300 -12 1003 263 101 41 chr12 128757175 128757486 -15525003 + L1MC4a LINE L1 5759 6115 -1693 2314 82 0 3 chr12 128757540 128757844 -15524645 + AluSq SINE Alu 1 303 -10 297 247 12 37 chr12 128758041 128758149 -15524340 + MLT1H1 LTR MaLR 44 146 -409 336 291 221 8 chr12 128758163 128758417 -15524072 + MLT1H1 LTR MaLR 273 555 0 455 306 34 35 chr12 128758495 128758737 -15523752 + L1MC4a LINE L1 5603 5822 -299 2280 94 0 0 chr12 128758949 128759246 -15523243 - AluSg SINE Alu -11 299 3 42 0 0 0 chr12 128759571 128759613 -15522876 + AT_rich Low_complexity Low_complexity 1 42 0 183 129 0 0 chr12 128759655 128759686 -15522803 + (GA)n Simple_repeat Simple_repeat 1 31 0 305 62 16 47 chr12 128759755 128759819 -15522670 + (GGGGA)n Simple_repeat Simple_repeat 1 62 0 202 211 15 15 chr12 128759823 128759955 -15522534 + GA-rich Low_complexity Low_complexity 1 132 0 990 163 12 12 chr12 128760674 128760834 -15521655 - FRAM SINE Alu -4 162 3 2199 115 0 3 chr12 128760971 128761283 -15521206 + AluSq SINE Alu 1 311 -2 235 314 137 16 chr12 128761774 128761898 -15520591 + MIR SINE MIR 110 248 -14 2139 118 0 0 chr12 128761989 128762293 -15520196 - AluSx SINE Alu -8 304 1 1025 184 44 29 chr12 128763096 128763302 -15519187 - MER20 DNA MER1_type -7 212 4 2111 112 0 0 chr12 128763485 128763780 -15518709 - AluSx SINE Alu -17 295 1 1307 101 6 0 chr12 128764190 128764369 -15518120 + AluSg/x SINE Alu 133 312 0 2096 127 0 0 chr12 128764375 128764675 -15517814 + AluSx SINE Alu 1 300 -12 5153 78 4 7 chr12 128764843 128765535 -15516954 - L1PA13 LINE L1 0 6163 5474 2115 168 31 36 chr12 128765943 128766104 -15516385 + MER65A LTR ERV1 1 161 -284 2092 68 0 0 chr12 128766104 128766367 -15516122 - AluSc SINE Alu -46 263 1 2115 168 31 36 chr12 128766367 128766652 -15515837 + MER65A LTR ERV1 161 445 0 2194 99 0 22 chr12 128767043 128767355 -15515134 - AluSg SINE Alu -5 305 1 565 182 61 8 chr12 128767509 128767641 -15514848 + L1MC4 LINE L1 7522 7660 -382 1718 114 20 57 chr12 128767740 128768038 -15514451 + L1MC1 LINE L1 6036 6322 -11 292 311 30 23 chr12 128768055 128768187 -15514302 + MLT1K LTR MaLR 393 525 -63 369 181 261 36 chr12 128768229 128768327 -15514162 + L1MC4 LINE L1 7785 7860 -182 240 35 0 0 chr12 128768327 128768356 -15514133 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 450 0 0 0 chr12 128768355 128768405 -15514084 + (TG)n Simple_repeat Simple_repeat 2 51 0 369 181 261 36 chr12 128768356 128768444 -15514045 + L1MC4 LINE L1 7860 7953 -89 1511 194 20 23 chr12 128770221 128770520 -15511969 - AluJo SINE Alu 0 302 5 241 319 11 11 chr12 128771271 128771365 -15511124 + GA-rich Low_complexity Low_complexity 2 95 0 4474 178 27 18 chr12 128772936 128773512 -15508977 + L1MB7 LINE L1 5171 5753 -431 2010 138 69 29 chr12 128773512 128773859 -15508630 + THE1B LTR MaLR 1 361 -3 4474 178 27 18 chr12 128773859 128774286 -15508203 + L1MB7 LINE L1 5753 6175 -9 2222 109 0 3 chr12 128774663 128774976 -15507513 + AluSx SINE Alu 1 312 0 701 298 77 31 chr12 128775260 128775612 -15506877 + L1MC4a LINE L1 5577 5944 -1864 2144 106 3 0 chr12 128775618 128775911 -15506578 - AluSp SINE Alu -11 302 9 2236 116 0 0 chr12 128775977 128776288 -15506201 - AluSx SINE Alu -1 311 1 2351 81 7 0 chr12 128776399 128776707 -15505782 - AluSp SINE Alu -3 310 1 278 409 0 0 chr12 128778547 128778640 -15503849 + MIR3 SINE MIR 89 181 -27 2192 103 0 0 chr12 128779533 128779834 -15502655 - AluSx SINE Alu -11 301 1 334 264 202 48 chr12 128781138 128781346 -15501143 + MIR SINE MIR 13 252 -10 1026 151 6 6 chr12 128781476 128781642 -15500847 + FRAM SINE Alu 1 166 0 180 0 0 0 chr12 128781965 128781985 -15500504 + (A)n Simple_repeat Simple_repeat 1 20 0 283 379 118 6 chr12 128782149 128782479 -15500010 + L3 LINE CR1 698 1064 -513 813 87 79 31 chr12 128782577 128782704 -15499785 + AluJo SINE Alu 2 134 -178 336 295 71 0 chr12 128782758 128782870 -15499619 + MIR SINE MIR 140 259 -3 420 292 157 22 chr12 128782965 128783143 -15499346 + L3 LINE CR1 1322 1523 -54 259 262 47 105 chr12 128783152 128783225 -15499264 + MER117 DNA MER1_type 1 77 -120 2336 63 27 0 chr12 128783225 128783525 -15498964 + AluY SINE Alu 1 308 -3 259 262 47 105 chr12 128783525 128783623 -15498866 + MER117 DNA MER1_type 77 162 -35 198 273 73 0 chr12 128783629 128783684 -15498805 + L3 LINE CR1 1516 1574 -3 1976 134 3 10 chr12 128783709 128784023 -15498466 + AluSx SINE Alu 1 312 0 180 378 24 24 chr12 128784265 128784347 -15498142 + MIR SINE MIR 20 101 -107 216 0 0 0 chr12 128784579 128784603 -15497886 + (TG)n Simple_repeat Simple_repeat 2 25 0 826 113 13 53 chr12 128784618 128784768 -15497721 - L1MB3 LINE L1 0 6183 6040 1415 164 0 45 chr12 128784774 128785060 -15497429 - AluJo SINE Alu 0 312 40 220 302 57 66 chr12 128785683 128785789 -15496700 - L2 LINE L2 -3 3310 3206 1640 144 11 4 chr12 128785918 128786181 -15496308 + L1PB3 LINE L1 5890 6154 0 1752 160 24 17 chr12 128786210 128786503 -15495986 + AluJb SINE Alu 1 295 -17 3137 155 12 2 chr12 128786507 128787024 -15495465 + L1MC1 LINE L1 5812 6333 0 244 238 167 62 chr12 128787997 128788338 -15494151 + L1ME4a LINE L1 5743 6119 -2 2265 111 3 0 chr12 128789413 128789719 -15492770 + AluSx SINE Alu 1 307 -5 2357 93 3 6 chr12 128789760 128790072 -15492417 + AluSx SINE Alu 1 311 -1 243 0 0 0 chr12 128790381 128790408 -15492081 + (TA)n Simple_repeat Simple_repeat 2 28 0 1943 110 0 0 chr12 128790409 128790663 -15491826 - AluSx SINE Alu -18 294 41 326 266 43 11 chr12 128791459 128791553 -15490936 - MER91B DNA MER1_type -2 188 92 347 302 17 26 chr12 128791574 128791690 -15490799 - MER91B DNA MER1_type -61 129 15 2034 121 16 16 chr12 128791815 128792120 -15490369 + AluSx SINE Alu 1 305 -7 1203 167 28 9 chr12 128792143 128792358 -15490131 + MER20 DNA MER1_type 1 219 0 443 275 46 9 chr12 128792553 128792662 -15489827 - MER81 DNA DNA 0 114 2 1801 164 3 43 chr12 128793194 128793517 -15488972 - AluJb SINE Alu -2 310 1 2112 60 0 0 chr12 128795654 128795904 -15486585 + AluY SINE Alu 62 311 0 750 265 22 6 chr12 128796586 128796767 -15485722 - MIR SINE MIR -77 185 2 2320 103 3 0 chr12 128797169 128797470 -15485019 + AluSp SINE Alu 1 302 -11 476 222 43 17 chr12 128798240 128798357 -15484132 - MIR SINE MIR 0 262 143 282 276 158 16 chr12 128798523 128798650 -15483839 - MIR SINE MIR -111 151 7 228 306 0 0 chr12 128798886 128798958 -15483531 + L1ME1 LINE L1 5991 6062 -104 269 214 276 0 chr12 128799015 128799113 -15483376 + L1MA10 LINE L1 6210 6334 0 1957 229 40 52 chr12 128799491 128800089 -15482400 + L1ME3 LINE L1 5572 6162 0 351 78 0 0 chr12 128801434 128801485 -15481004 + (CA)n Simple_repeat Simple_repeat 2 52 0 772 262 153 37 chr12 128801625 128802003 -15480486 - L2 LINE L2 0 3313 2892 360 279 67 56 chr12 128802023 128802197 -15480292 - MER112 DNA MER1_type 0 260 85 428 188 68 75 chr12 128802197 128802330 -15480159 - MER104 DNA Tc2 0 180 49 239 118 176 0 chr12 128802370 128802421 -15480068 - MER112 DNA MER1_type -193 67 8 752 300 85 40 chr12 128802442 128802725 -15479764 - L2 LINE L2 -459 2855 2547 185 0 0 39 chr12 128802725 128802751 -15479738 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 752 300 85 40 chr12 128802751 128802867 -15479622 - L2 LINE L2 -767 2547 2438 24 0 0 0 chr12 128802960 128802984 -15479505 + AT_rich Low_complexity Low_complexity 1 24 0 2190 92 27 3 chr12 128803008 128803302 -15479187 + AluY SINE Alu 1 301 -10 1737 197 35 130 chr12 128803389 128804181 -15478308 + L1MEc LINE L1 1082 1798 -4598 852 149 43 43 chr12 128804193 128804381 -15478108 + L1MA5A LINE L1 6106 6293 -4 785 236 39 61 chr12 128804769 128804998 -15477491 - MER58A DNA MER1_type 0 224 1 520 127 37 119 chr12 128805616 128805708 -15476781 - Charlie1 DNA MER1_type -34 2727 2629 2334 102 0 0 chr12 128805708 128806003 -15476486 + AluSg SINE Alu 1 295 -15 2298 76 3 7 chr12 128806006 128806309 -15476180 + AluSc SINE Alu 1 302 -7 520 127 37 119 chr12 128806309 128806346 -15476143 - Charlie1 DNA MER1_type -134 2627 2605 703 163 85 7 chr12 128806364 128806452 -15476037 - Charlie1a DNA MER1_type -2608 153 49 1882 151 7 10 chr12 128806452 128806750 -15475739 + AluJb SINE Alu 4 300 -12 703 163 85 7 chr12 128806750 128806802 -15475687 - Charlie1a DNA MER1_type -2712 49 2 447 35 0 0 chr12 128809316 128809373 -15473116 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 21 0 0 0 chr12 128810250 128810271 -15472218 + AT_rich Low_complexity Low_complexity 1 21 0 198 71 0 0 chr12 128810817 128810845 -15471644 + (GA)n Simple_repeat Simple_repeat 1 28 0 213 276 17 0 chr12 128811309 128811367 -15471122 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 190 361 57 46 chr12 128811533 128811886 -15470603 - L2 LINE L2 -17 3255 2877 624 273 40 111 chr12 128811943 128812021 -15470468 - L2 LINE L2 -789 2525 2443 2341 97 0 7 chr12 128812021 128812329 -15470160 + AluSg SINE Alu 1 306 -4 624 273 40 111 chr12 128812329 128812602 -15469887 - L2 LINE L2 -871 2443 2199 844 193 0 59 chr12 128812682 128812869 -15469620 - MIR SINE MIR -62 200 25 359 182 15 0 chr12 128813645 128813711 -15468778 + AluJ/FLAM SINE Alu 14 80 -222 26 30 0 0 chr12 128813736 128813769 -15468720 + AT_rich Low_complexity Low_complexity 1 33 0 400 152 0 0 chr12 128813770 128813836 -15468653 + FLAM_A SINE Alu 70 135 -7 238 322 96 0 chr12 128814189 128814304 -15468185 + L2 LINE L2 3147 3272 0 477 207 16 99 chr12 128814602 128814765 -15467724 - MIR SINE MIR -65 143 31 4203 100 19 85 chr12 128814765 128815413 -15467076 - MER51C LTR ERV1 0 640 38 2038 122 38 0 chr12 128815413 128815700 -15466789 + AluSx SINE Alu 1 298 -14 4203 100 19 85 chr12 128815700 128815732 -15466757 - MER51C LTR ERV1 -602 38 5 408 99 26 0 chr12 128815735 128815811 -15466678 - MER51A LTR ERV1 -579 61 1 1916 123 25 81 chr12 128817699 128817931 -15464558 + MER1B DNA MER1_type 1 208 -2504 2198 121 3 0 chr12 128817931 128818238 -15464251 + AluSx SINE Alu 1 308 -4 1916 123 25 81 chr12 128818238 128818363 -15464126 + MER1B DNA MER1_type 208 338 -1 2344 113 0 0 chr12 128818471 128818771 -15463718 + AluSx SINE Alu 1 300 -12 1811 172 21 0 chr12 128818917 128819207 -15463282 + AluJo SINE Alu 1 296 -16 1699 189 0 28 chr12 128821321 128821639 -15460850 + AluJo SINE Alu 1 309 -3 1315 168 4 38 chr12 128821857 128822095 -15460394 - AluJo SINE Alu -82 230 1 296 287 90 24 chr12 128822427 128822594 -15459895 + L1MEd LINE L1 8 185 -5934 352 248 37 0 chr12 128822766 128822875 -15459614 + L1MEd LINE L1 721 833 -5286 1235 132 47 5 chr12 128823013 128823203 -15459286 + AluJo SINE Alu 114 311 -1 539 256 72 30 chr12 128823205 128823367 -15459122 + L1MEd LINE L1 947 1126 -4993 2268 104 3 7 chr12 128823367 128823674 -15458815 - AluSx SINE Alu -6 306 1 539 256 72 30 chr12 128823674 128823773 -15458716 + L1MEd LINE L1 1126 1219 -4900 612 168 28 47 chr12 128823788 128823895 -15458594 + AluJo SINE Alu 104 208 -104 284 15 108 0 chr12 128823922 128823987 -15458502 + (TA)n Simple_repeat Simple_repeat 2 73 0 2006 156 0 3 chr12 128824036 128824338 -15458151 - AluJb SINE Alu -11 301 1 1258 133 27 0 chr12 128824418 128824606 -15457883 + L1MA1 LINE L1 5601 5793 -509 1366 71 71 62 chr12 128824609 128824819 -15457670 + L1PA11 LINE L1 5949 6174 0 3959 93 13 2 chr12 128824820 128825348 -15457141 + L1MA1 LINE L1 5769 6302 0 2294 114 0 0 chr12 128826479 128826778 -15455711 - AluSq SINE Alu -14 299 1 556 133 0 0 chr12 128827975 128828058 -15454431 + L2 LINE L2 3231 3313 0 21 0 0 0 chr12 128828824 128828845 -15453644 + AT_rich Low_complexity Low_complexity 1 21 0 292 282 111 102 chr12 128829667 128830110 -15452379 - L2 LINE L2 0 3272 2826 360 56 0 37 chr12 128831540 128831594 -15450895 + L1PA8 LINE L1 6121 6172 0 530 191 191 0 chr12 128831679 128831826 -15450663 + MER104 DNA Tc2 1 175 -5 448 159 28 9 chr12 128831947 128832001 -15450488 + Charlie5 DNA MER1_type 2445 2497 -88 2238 89 20 3 chr12 128832001 128832294 -15450195 - AluSq SINE Alu -15 298 1 448 159 28 9 chr12 128832294 128832346 -15450143 + Charlie5 DNA MER1_type 2497 2553 -32 1951 161 64 20 chr12 128832491 128832881 -15449608 + L1MB2 LINE L1 5764 6170 -1 691 186 126 12 chr12 128833027 128833119 -15449370 + L1MA9 LINE L1 6127 6207 -105 255 61 0 0 chr12 128833119 128833152 -15449337 + (TG)n Simple_repeat Simple_repeat 2 34 0 691 186 126 12 chr12 128833152 128833226 -15449263 + L1MA9 LINE L1 6207 6312 0 1823 167 3 3 chr12 128833257 128833545 -15448944 + AluJb SINE Alu 1 288 -24 2336 93 0 0 chr12 128833557 128833848 -15448641 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr12 128833848 128833871 -15448618 + AT_rich Low_complexity Low_complexity 1 23 0 2372 82 0 0 chr12 128835539 128835830 -15446659 + AluSx SINE Alu 1 291 -21 2464 81 0 0 chr12 128835956 128836263 -15446226 + AluSg SINE Alu 1 307 -3 2129 121 3 0 chr12 128837505 128837787 -15444702 + AluSx SINE Alu 1 283 -29 216 0 0 0 chr12 128837787 128837811 -15444678 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 942 215 77 19 chr12 128837872 128838132 -15444357 + ORSL DNA AcHobo 1 275 0 21 0 0 0 chr12 128838874 128838895 -15443594 + AT_rich Low_complexity Low_complexity 1 21 0 2292 103 0 0 chr12 128838903 128839194 -15443295 + AluSg SINE Alu 1 291 -19 1767 201 6 14 chr12 128840477 128840821 -15441668 - MER58B DNA MER1_type 0 341 1 248 242 0 16 chr12 128840949 128841011 -15441478 + CT-rich Low_complexity Low_complexity 1 61 0 182 37 37 0 chr12 128842902 128842929 -15439560 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 2616 138 64 58 chr12 128843740 128844132 -15438357 + MLT1D LTR MaLR 3 400 -105 2062 118 0 51 chr12 128844132 128844445 -15438044 - AluSx SINE Alu -14 298 2 2616 138 64 58 chr12 128844445 128844552 -15437937 + MLT1D LTR MaLR 400 505 0 480 143 41 10 chr12 128844658 128844756 -15437733 - MIR SINE MIR -68 194 94 1610 153 0 108 chr12 128845406 128845548 -15436941 + AluJo SINE Alu 1 88 -214 1799 145 43 0 chr12 128845548 128845824 -15436665 - AluJb SINE Alu -24 288 1 1610 153 0 108 chr12 128845824 128846014 -15436475 + AluJo SINE Alu 88 297 -5 2499 74 0 0 chr12 128846016 128846325 -15436164 + AluY SINE Alu 1 309 -2 662 256 6 0 chr12 128846359 128846527 -15435962 + MIR SINE MIR 94 262 0 506 204 33 83 chr12 128847611 128847792 -15434697 + MER5B DNA MER1_type 4 175 -3 2155 84 3 48 chr12 128848234 128848580 -15433909 - AluSc SINE Alu 0 309 1 210 155 17 35 chr12 128848739 128848797 -15433692 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 197 128 21 0 chr12 128849141 128849188 -15433301 + GA-rich Low_complexity Low_complexity 1 48 0 1019 108 184 0 chr12 128849229 128849414 -15433075 + MER20 DNA MER1_type 1 219 0 196 318 16 0 chr12 128849415 128849478 -15433011 - L2 LINE L2 -68 3204 3141 333 200 122 11 chr12 128849514 128849604 -15432885 - MIR SINE MIR -12 250 151 261 317 0 12 chr12 128849695 128849777 -15432712 + MIR SINE MIR 17 97 -165 2089 123 0 17 chr12 128851038 128851339 -15431150 - AluSc SINE Alu -13 296 1 1215 93 0 6 chr12 128851366 128851556 -15430933 + AluSc SINE Alu 120 308 0 22 0 0 0 chr12 128851661 128851683 -15430806 + AT_rich Low_complexity Low_complexity 1 22 0 254 206 14 0 chr12 128851684 128851757 -15430732 + (CA)n Simple_repeat Simple_repeat 1 74 0 499 288 126 33 chr12 128851880 128852291 -15430198 + L2 LINE L2 2551 2998 -274 387 177 42 31 chr12 128852306 128852402 -15430087 + L2 LINE L2 3193 3289 -24 234 105 0 0 chr12 128852407 128852445 -15430044 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 290 258 43 21 chr12 128852461 128852554 -15429935 + L2 LINE L2 3196 3290 -23 245 330 21 10 chr12 128852728 128852825 -15429664 + L2 LINE L2 3168 3265 -48 330 87 0 0 chr12 128852833 128852879 -15429610 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 387 360 34 6 chr12 128853439 128853614 -15428875 - MIR SINE MIR -78 184 5 2093 125 0 16 chr12 128853666 128853969 -15428520 + AluSx SINE Alu 1 298 -14 221 316 187 0 chr12 128853998 128854153 -15428336 + MIR SINE MIR 65 248 -14 488 242 38 51 chr12 128854301 128854458 -15428031 + MIR SINE MIR 88 242 -20 244 228 0 18 chr12 128854535 128854592 -15427897 - L2 LINE L2 -4 3309 3254 354 348 102 15 chr12 128854765 128855098 -15427391 - L2 LINE L2 -557 2757 2396 770 297 5 0 chr12 128856915 128857127 -15425362 + MIR SINE MIR 50 262 0 374 338 47 0 chr12 128857827 128857975 -15424514 - MIR SINE MIR 0 262 108 1336 103 98 23 chr12 128858304 128858518 -15423971 - MER30 DNA MER1_type 0 230 1 718 261 107 17 chr12 128863776 128864010 -15418479 + MIR SINE MIR 8 262 0 2378 105 0 6 chr12 128864419 128864734 -15417755 + AluSq SINE Alu 1 313 0 723 265 34 89 chr12 128865060 128865585 -15416904 + L1MEd LINE L1 543 1038 -5081 381 282 135 47 chr12 128865588 128865758 -15416731 + MER5A DNA MER1_type 4 188 -1 402 172 91 0 chr12 128865772 128865871 -15416618 + L1MEd LINE L1 1043 1150 -4969 266 286 0 0 chr12 128866120 128866183 -15416306 + L2 LINE L2 3206 3268 -4 36 53 0 0 chr12 128866457 128866514 -15415975 + AT_rich Low_complexity Low_complexity 1 57 0 243 0 0 0 chr12 128866588 128866615 -15415874 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 4387 136 70 96 chr12 128868015 128868952 -15413537 + MER21A LTR ERV1 13 925 -6 2094 123 3 19 chr12 128868985 128869294 -15413195 + AluSx SINE Alu 1 304 -8 1520 186 80 4 chr12 128869609 128869884 -15412605 + AluJb SINE Alu 1 296 -16 2310 99 3 7 chr12 128870510 128870814 -15411675 - AluSq SINE Alu -10 303 1 1642 143 0 34 chr12 128871012 128871278 -15411211 - AluJo SINE Alu -18 294 38 343 77 0 0 chr12 128871312 128871364 -15411125 - Alu SINE Alu -2 300 249 2335 63 3 7 chr12 128873337 128873621 -15408868 + AluSx SINE Alu 17 299 -13 376 19 38 0 chr12 128873647 128873700 -15408789 + (CA)n Simple_repeat Simple_repeat 1 55 0 2379 92 3 0 chr12 128873991 128874286 -15408203 + AluSp SINE Alu 1 296 -17 390 230 45 30 chr12 128874516 128874710 -15407779 + MIR SINE MIR 17 250 -12 383 169 102 0 chr12 128875140 128875234 -15407255 - MER5A DNA MER1_type -80 109 4 1201 179 9 5 chr12 128875356 128875574 -15406915 + MER20 DNA MER1_type 1 219 0 2435 69 0 3 chr12 128875796 128876087 -15406402 + AluY SINE Alu 1 290 -21 798 164 0 8 chr12 128876359 128876493 -15405996 + FLAM_C SINE Alu 1 133 0 394 285 131 27 chr12 128876623 128876844 -15405645 + MIR SINE MIR 5 248 -14 1185 164 0 96 chr12 128878654 128878835 -15403654 + L1MD3 LINE L1 7730 7874 -121 2193 121 10 0 chr12 128878835 128879141 -15403348 + AluSx SINE Alu 1 309 -3 1185 164 0 96 chr12 128879141 128879251 -15403238 + L1MD3 LINE L1 7874 7993 -2 2027 138 10 7 chr12 128879255 128879553 -15402936 + AluJb SINE Alu 1 299 -13 2364 100 3 0 chr12 128879580 128879879 -15402610 + AluSp SINE Alu 1 300 -13 726 164 33 59 chr12 128879944 128880096 -15402393 + Tigger7 DNA MER2_type 2339 2486 -1 182 347 32 16 chr12 128881755 128881879 -15400610 + L2 LINE L2 2802 2927 -387 208 279 67 58 chr12 128881990 128882094 -15400395 + L2 LINE L2 3168 3272 0 2376 102 3 0 chr12 128882324 128882627 -15399862 + AluSx SINE Alu 1 304 -8 324 0 0 0 chr12 128882675 128882711 -15399778 + (TA)n Simple_repeat Simple_repeat 1 36 0 575 241 31 52 chr12 128882840 128882962 -15399527 + MIR SINE MIR 76 194 -68 724 223 6 11 chr12 128882962 128883137 -15399352 + MER104 DNA MER2_type 4 177 -3 575 241 31 52 chr12 128883137 128883205 -15399284 + MIR SINE MIR 194 262 0 216 0 0 0 chr12 128883357 128883381 -15399108 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2208 77 0 18 chr12 128883383 128883668 -15398821 - AluY SINE Alu -31 280 1 21 0 0 0 chr12 128884103 128884124 -15398365 + AT_rich Low_complexity Low_complexity 1 21 0 2070 135 23 0 chr12 128884354 128884658 -15397831 + AluSx SINE Alu 1 311 -1 2275 102 0 3 chr12 128886011 128886305 -15396184 - AluSc SINE Alu -16 293 1 2199 95 24 17 chr12 128887140 128887436 -15395053 - AluSx SINE Alu -14 298 1 205 185 31 15 chr12 128887548 128887613 -15394876 + GA-rich Low_complexity Low_complexity 2 67 0 1526 75 5 0 chr12 128887718 128887904 -15394585 + AluSg/x SINE Alu 93 279 -31 582 15 0 0 chr12 128887908 128887975 -15394514 + (GAGAA)n Simple_repeat Simple_repeat 2 68 0 1033 153 47 0 chr12 128889198 128889368 -15393121 + MER20 DNA MER1_type 31 208 -11 1512 185 32 0 chr12 128889445 128889726 -15392763 - AluJb SINE Alu -22 290 1 2509 48 0 3 chr12 128890156 128890465 -15392024 + AluY SINE Alu 1 308 -3 222 191 0 0 chr12 128891620 128891667 -15390822 + GA-rich Low_complexity Low_complexity 1 47 0 380 318 18 9 chr12 128891746 128891856 -15390633 - MIR SINE MIR -65 143 33 2143 119 0 0 chr12 128891953 128892256 -15390233 + AluSc SINE Alu 1 303 -6 491 270 66 53 chr12 128893243 128893555 -15388934 + L1ME4a LINE L1 5564 5881 -240 382 307 31 0 chr12 128893808 128893935 -15388554 + MIR SINE MIR 99 229 -33 2481 68 0 0 chr12 128894575 128894883 -15387606 + AluSc SINE Alu 1 308 -1 261 208 0 0 chr12 128896300 128896348 -15386141 - MER5A DNA MER1_type -6 183 136 695 155 23 23 chr12 128896357 128896486 -15386003 + FLAM_C SINE Alu 2 130 -3 484 240 39 47 chr12 128896506 128896635 -15385854 - L2 LINE L2 -4 3309 3182 2261 89 0 10 chr12 128896636 128896940 -15385549 - AluSx SINE Alu -10 302 2 258 259 75 68 chr12 128897003 128897150 -15385339 + MER5A DNA MER1_type 31 178 0 678 259 0 15 chr12 128898253 128898450 -15384039 - LTR33 LTR ERVL 0 521 328 782 106 21 84 chr12 128898530 128898603 -15383886 + MER5A DNA MER1_type 1 62 -127 1585 200 0 3 chr12 128898603 128898903 -15383586 + AluJo SINE Alu 1 299 -13 782 106 21 84 chr12 128898903 128898971 -15383518 + MER5A DNA MER1_type 62 133 -56 181 267 44 0 chr12 128899155 128899200 -15383289 - MIR SINE MIR -63 145 99 2157 114 0 0 chr12 128899746 128900043 -15382446 - AluSx SINE Alu -15 297 1 886 256 87 56 chr12 128900064 128900454 -15382035 + MLT1J LTR MaLR 1 402 -109 276 111 37 37 chr12 128900452 128900506 -15381983 + MLT1J1 LTR MaLR 393 446 0 * 2159 115 0 0 chr12 128900677 128900982 -15381507 + AluSg SINE Alu 1 305 -5 210 300 128 51 chr12 128901612 128902061 -15380428 - L2 LINE L2 -218 3054 2518 2111 100 10 0 chr12 128902098 128902387 -15380102 + AluSg SINE Alu 1 292 -18 1053 223 12 84 chr12 128902522 128902590 -15379899 - MER46C DNA MER2_type -27 311 240 2213 100 0 0 chr12 128902590 128902890 -15379599 - AluSx SINE Alu -12 300 1 1053 223 12 84 chr12 128902890 128903153 -15379336 - MER46C DNA MER2_type -98 240 4 2116 112 0 6 chr12 128903407 128903720 -15378769 + AluY SINE Alu 1 311 0 2243 100 0 0 chr12 128903939 128904239 -15378250 + AluSx SINE Alu 1 300 -12 1925 108 31 0 chr12 128904239 128904512 -15377977 + AluSg SINE Alu 1 286 -24 369 0 0 0 chr12 128904512 128904553 -15377936 + (CA)n Simple_repeat Simple_repeat 2 42 0 1925 108 31 0 chr12 128904553 128904564 -15377925 + AluSg SINE Alu 286 295 -15 1516 199 56 3 chr12 128905190 128905477 -15377012 + AluJo SINE Alu 1 302 0 2208 95 0 0 chr12 128905556 128905852 -15376637 - AluY SINE Alu -15 296 1 1965 146 3 0 chr12 128905880 128906182 -15376307 + AluSx SINE Alu 1 303 -9 2120 85 0 49 chr12 128906182 128906488 -15376001 + AluSx SINE Alu 6 296 -16 324 352 13 25 chr12 128907111 128907270 -15375219 + L1MC4 LINE L1 5770 5926 -1882 1729 155 55 0 chr12 128907312 128907602 -15374887 + AluJb SINE Alu 1 306 -6 2153 124 0 0 chr12 128907713 128908020 -15374469 + AluSx SINE Alu 1 307 -5 2354 84 0 3 chr12 128908244 128908554 -15373935 - AluY SINE Alu -2 309 1 258 208 0 0 chr12 128908944 128908992 -15373497 + A-rich Low_complexity Low_complexity 2 49 0 598 86 0 43 chr12 128908992 128909109 -15373380 + (GGGAA)n Simple_repeat Simple_repeat 2 113 0 271 301 16 8 chr12 128909123 128909246 -15373243 + MER113 DNA MER1_type? 1 124 -397 2437 199 120 80 chr12 128909527 128909657 -15372832 + L1MC4 LINE L1 6451 6574 -1234 769 192 0 0 chr12 128909657 128909787 -15372702 - FLAM_C SINE Alu -3 130 1 2437 199 120 80 chr12 128909787 128910323 -15372166 + L1MC4 LINE L1 6574 7252 -556 1812 156 13 0 chr12 128910323 128910624 -15371865 + AluJo SINE Alu 1 305 -7 2437 199 120 80 chr12 128910624 128910975 -15371514 + L1MC4 LINE L1 7252 7587 -221 1990 86 55 10 chr12 128911000 128911291 -15371198 + AluSx SINE Alu 1 304 -8 241 235 38 0 chr12 128911323 128911455 -15371034 + (TA)n Simple_repeat Simple_repeat 2 138 0 266 122 82 0 chr12 128911553 128911602 -15370887 + MLT2B2 LTR ERVL 458 510 -5 1733 128 25 15 chr12 128911636 128911910 -15370579 + AluSx SINE Alu 24 300 -12 31 0 0 0 chr12 128911923 128911954 -15370535 + AT_rich Low_complexity Low_complexity 1 31 0 222 37 0 0 chr12 128911987 128912014 -15370475 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 839 111 0 0 chr12 128912016 128912133 -15370356 - FLAM_C SINE Alu -12 131 15 27 0 0 0 chr12 128912438 128912465 -15370024 + AT_rich Low_complexity Low_complexity 1 27 0 753 158 0 0 chr12 128912473 128912593 -15369896 + AluJo/FLAM SINE Alu 1 120 -192 2191 80 7 7 chr12 128912596 128912895 -15369594 - AluSp SINE Alu -14 299 1 1719 127 55 17 chr12 128912924 128913216 -15369273 + AluSx SINE Alu 1 303 -9 2064 102 3 10 chr12 128913237 128913542 -15368947 + AluSg SINE Alu 1 303 -7 821 204 13 0 chr12 128913543 128913695 -15368794 + AluJo/FRAM SINE Alu 134 287 -25 2101 82 14 4 chr12 128913709 128914015 -15368474 + AluY SINE Alu 1 309 0 1092 156 0 0 chr12 128914834 128915014 -15367475 + L1MB4 LINE L1 5995 6174 -6 219 36 0 0 chr12 128915109 128915137 -15367352 + (CA)n Simple_repeat Simple_repeat 2 29 0 1967 139 0 0 chr12 128916805 128917099 -15365390 + AluSx SINE Alu 3 296 -16 2274 78 0 7 chr12 128917107 128917402 -15365087 + AluY SINE Alu 1 293 -18 1942 122 14 3 chr12 128918103 128918397 -15364092 + AluSx SINE Alu 1 297 -15 1562 155 3 42 chr12 128918402 128918686 -15363803 - AluJo SINE Alu -39 273 1 2128 114 0 0 chr12 128919407 128919706 -15362783 + AluSx SINE Alu 1 299 -13 2324 96 0 3 chr12 128919872 128920186 -15362303 + AluSp SINE Alu 1 313 0 264 241 50 75 chr12 128920296 128920495 -15361994 + L1MC/D LINE L1 5631 5824 -1984 225 83 0 0 chr12 128920549 128920585 -15361904 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1753 131 22 0 chr12 128920589 128920863 -15361626 - AluSx SINE Alu -32 280 1 1089 222 72 50 chr12 128921012 128921107 -15361382 + MLT1A1 LTR MaLR 1 92 -273 2094 96 43 7 chr12 128921107 128921408 -15361081 + AluSx SINE Alu 1 312 0 1089 222 72 50 chr12 128921408 128921488 -15361001 + MLT1A1 LTR MaLR 92 169 -196 2140 101 3 10 chr12 128921488 128921794 -15360695 + AluSg SINE Alu 1 304 -6 1808 119 17 10 chr12 128921794 128922084 -15360405 + L1PA13 LINE L1 5860 6152 -7 2293 86 0 16 chr12 128922084 128922398 -15360091 - AluSc SINE Alu 0 309 1 1089 222 72 50 chr12 128922402 128922641 -15359848 + MLT1A1 LTR MaLR 168 363 -2 1788 146 10 3 chr12 128922908 128923202 -15359287 - AluJb SINE Alu -16 296 1 472 267 0 9 chr12 128923296 128923401 -15359088 - L2 LINE L2 0 3313 3210 390 273 37 93 chr12 128924047 128924160 -15358329 - MIR SINE MIR 0 262 159 2170 96 17 0 chr12 128924160 128924452 -15358037 + AluSx SINE Alu 5 301 -11 390 273 37 93 chr12 128924452 128924499 -15357990 - MIR SINE MIR -103 159 111 413 261 144 12 chr12 128924762 128925003 -15357486 + MLT1H1 LTR MaLR 1 270 -285 846 223 84 42 chr12 128925007 128925105 -15357384 - MER58A DNA MER1_type -2196 224 132 1708 169 26 0 chr12 128925105 128925407 -15357082 + AluJo SINE Alu 1 310 -2 846 223 84 42 chr12 128925407 128925523 -15356966 - MER58A DNA MER1_type -2288 132 1 580 228 137 39 chr12 128925585 128925762 -15356727 + MLT1H1 LTR MaLR 286 493 -62 2062 112 10 0 chr12 128925762 128926056 -15356433 - AluSq SINE Alu -16 297 1 580 228 137 39 chr12 128926056 128926111 -15356378 + MLT1H1 LTR MaLR 493 541 -14 686 216 15 0 chr12 128926124 128926258 -15356231 - MER20 DNA MER1_type -2 217 82 697 137 70 144 chr12 128926426 128926515 -15355974 + ORSL DNA AcHobo 12 106 -169 1502 190 35 10 chr12 128926515 128926805 -15355684 + AluJo SINE Alu 1 297 -15 697 137 70 144 chr12 128926805 128927000 -15355489 + ORSL DNA AcHobo 106 275 0 394 227 64 78 chr12 128927025 128927118 -15355371 + MLT1K LTR MaLR 439 531 -57 1826 156 3 0 chr12 128927118 128927406 -15355083 - AluJb SINE Alu -23 289 1 394 227 64 78 chr12 128927406 128927453 -15355036 + MLT1K LTR MaLR 531 577 -11 232 264 88 33 chr12 128927453 128927544 -15354945 - MIR SINE MIR -161 101 6 1088 238 51 60 chr12 128928262 128928598 -15353891 + MER102b DNA MER1_type 6 338 -3 547 267 36 47 chr12 128928649 128928837 -15353652 + MLT1H LTR MaLR 16 212 -337 2156 115 3 0 chr12 128928837 128929142 -15353347 + AluSx SINE Alu 1 306 -6 547 267 36 47 chr12 128929142 128929202 -15353287 + MLT1H LTR MaLR 212 271 -278 1022 194 82 0 chr12 128929204 128929400 -15353089 + MER58A DNA MER1_type 1 212 -12 2214 92 0 0 chr12 128929407 128929702 -15352787 + AluSg SINE Alu 1 295 -15 478 240 120 49 chr12 128929705 128929982 -15352507 + MLT1H1 LTR MaLR 257 555 0 255 253 22 126 chr12 128929982 128930026 -15352463 + MER5A DNA MER1_type 27 74 -115 189 0 0 0 chr12 128930026 128930047 -15352442 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 255 253 22 126 chr12 128930047 128930140 -15352349 + MER5A DNA MER1_type 74 143 -46 1534 171 4 14 chr12 128930140 128930421 -15352068 + AluJo SINE Alu 1 278 -34 255 253 22 126 chr12 128930421 128930464 -15352025 + MER5A DNA MER1_type 143 189 0 22 0 0 0 chr12 128930783 128930805 -15351684 + AT_rich Low_complexity Low_complexity 1 22 0 190 236 35 160 chr12 128931220 128931364 -15351125 + MIR SINE MIR 5 130 -132 1762 165 0 3 chr12 128931375 128931666 -15350823 - AluJb SINE Alu -22 290 1 1845 146 0 37 chr12 128931824 128932147 -15350342 - AluSx SINE Alu 0 312 2 669 270 8 60 chr12 128932494 128932618 -15349871 - MIR SINE MIR 0 262 155 1679 112 4 30 chr12 128932618 128932920 -15349569 - AluSx SINE Alu 0 315 21 669 270 8 60 chr12 128932920 128933042 -15349447 - MIR SINE MIR -107 155 28 260 235 59 0 chr12 128933165 128933233 -15349256 + L1ME2 LINE L1 6027 6098 -66 1678 56 4 22 chr12 128933254 128933486 -15349003 + AluY SINE Alu 82 309 -2 1757 165 0 0 chr12 128933591 128933870 -15348619 + AluJb SINE Alu 3 281 -31 896 200 0 0 chr12 128934030 128934195 -15348294 + AluJo SINE Alu 1 165 -147 1853 88 11 23 chr12 128934271 128934534 -15347955 + AluSq SINE Alu 1 260 -53 195 42 0 0 chr12 128934546 128934570 -15347919 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 456 230 169 14 chr12 128934942 128935090 -15347399 + L2 LINE L2 3141 3311 -2 941 253 48 39 chr12 128935093 128935425 -15347064 - L2 LINE L2 -144 3169 2835 221 203 125 0 chr12 128935436 128935500 -15346989 - MIR SINE MIR -130 132 61 1145 255 82 60 chr12 128936419 128936769 -15345720 + L1ME3A LINE L1 5313 5685 -485 1951 110 14 7 chr12 128936769 128937060 -15345429 - AluSx SINE Alu -14 298 6 1145 255 82 60 chr12 128937060 128937345 -15345144 + L1ME3A LINE L1 5685 5962 -208 287 117 50 50 chr12 128937359 128937419 -15345070 - MADE1 DNA Mariner 0 80 21 183 205 0 0 chr12 128937549 128937588 -15344901 + (TG)n Simple_repeat Simple_repeat 2 40 0 222 37 0 0 chr12 128937665 128937692 -15344797 + (CA)n Simple_repeat Simple_repeat 1 27 0 1510 187 0 48 chr12 128937814 128938129 -15344360 - AluJb SINE Alu -12 300 1 1791 138 17 14 chr12 128938157 128938453 -15344036 + AluSx SINE Alu 1 297 -15 274 206 168 9 chr12 128938766 128938873 -15343616 - MER113 DNA MER1_type? -397 124 1 406 341 106 18 chr12 128938885 128939055 -15343434 - MIR SINE MIR -76 186 2 192 269 90 30 chr12 128939055 128939114 -15343375 + L2 LINE L2 3249 3311 -2 785 239 0 38 chr12 128939285 128939429 -15343060 - MER5B DNA MER1_type 0 178 41 2359 101 51 25 chr12 128939429 128939784 -15342705 + THE1B LTR MaLR 1 364 0 785 239 0 38 chr12 128939784 128939823 -15342666 - MER5B DNA MER1_type -137 41 2 209 264 19 0 chr12 128940223 128940276 -15342213 + CT-rich Low_complexity Low_complexity 2 55 0 1950 137 0 19 chr12 128940317 128940632 -15341857 + AluSx SINE Alu 1 309 -3 4061 178 23 7 chr12 128940846 128941302 -15341187 + L1MB7 LINE L1 5203 5679 -505 2457 58 0 0 chr12 128941302 128941610 -15340879 + AluY SINE Alu 1 308 -3 4061 178 23 7 chr12 128941610 128941969 -15340520 + L1MB7 LINE L1 5679 6031 -153 971 169 12 6 chr12 128942067 128942239 -15340250 - L1MC1 LINE L1 -9 6324 6152 1557 156 18 21 chr12 128942239 128942522 -15339967 + AluJo SINE Alu 29 310 -2 790 145 11 22 chr12 128942523 128942702 -15339787 + GA-rich Low_complexity Low_complexity 2 178 0 4302 129 35 17 chr12 128942716 128943262 -15339227 - L1MC1 LINE L1 -168 6165 5602 2411 59 0 7 chr12 128943262 128943565 -15338924 - AluY SINE Alu -9 302 2 4302 129 35 17 chr12 128943565 128943722 -15338767 - L1MC1 LINE L1 -731 5602 5449 926 144 0 0 chr12 128943722 128943862 -15338627 + L1MB7 LINE L1 6020 6165 -19 1636 180 18 0 chr12 128943872 128944155 -15338334 - AluJo SINE Alu -24 288 1 853 216 124 5 chr12 128944219 128944413 -15338076 - MER20 DNA MER1_type 0 219 3 1497 161 55 7 chr12 128945124 128945397 -15337092 + AluJb SINE Alu 5 290 -22 1860 134 3 39 chr12 128945494 128945800 -15336689 + AluSx SINE Alu 1 295 -17 894 150 0 0 chr12 128945920 128946053 -15336436 - FLAM_C SINE Alu 0 133 1 292 305 19 29 chr12 128946054 128946159 -15336330 + L2 LINE L2 3169 3272 0 1929 120 41 0 chr12 128946377 128946668 -15335821 + AluSg SINE Alu 1 303 -7 884 292 107 23 chr12 128946768 128946932 -15335557 - L2 LINE L2 0 3313 3164 1716 158 0 4 chr12 128946932 128947210 -15335279 + AluSx SINE Alu 21 297 -15 884 292 107 23 chr12 128947210 128947439 -15335050 - L2 LINE L2 -149 3164 2887 391 143 0 0 chr12 128947443 128947506 -15334983 - MLT1D LTR MaLR 0 505 443 215 30 0 30 chr12 128947506 128947539 -15334950 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1947 98 25 14 chr12 128947541 128947826 -15334663 - AluSp SINE Alu -25 288 1 399 182 0 0 chr12 128947834 128947900 -15334589 - AluJo SINE Alu -6 296 231 897 146 25 32 chr12 128947900 128947941 -15334548 - AluJo SINE Alu -155 157 117 1435 235 78 44 chr12 128947941 128948375 -15334114 - LTR2 LTR ERV1 0 449 1 897 146 25 32 chr12 128948375 128948491 -15333998 - AluJo SINE Alu -195 117 1 1058 231 65 147 chr12 128948491 128948802 -15333687 - MLT1D LTR MaLR -51 454 196 1840 131 54 3 chr12 128948802 128949099 -15333390 - AluSx SINE Alu 0 312 1 1058 231 65 147 chr12 128949099 128949277 -15333212 - MLT1D LTR MaLR -309 196 5 2445 63 0 3 chr12 128949333 128949635 -15332854 - AluY SINE Alu -10 301 1 1820 143 17 0 chr12 128949970 128950257 -15332232 - AluSx SINE Alu -20 292 1 2140 111 3 3 chr12 128950266 128950572 -15331917 - AluSq SINE Alu -7 306 1 2230 94 0 0 chr12 128950583 128950880 -15331609 - AluSx SINE Alu -10 302 6 2433 131 26 3 chr12 128950881 128951263 -15331226 - L1MB3 LINE L1 -38 6145 5755 825 192 0 0 chr12 128951276 128951427 -15331062 - FRAM SINE Alu -15 161 11 2133 120 0 3 chr12 128951434 128951742 -15330747 - AluSx SINE Alu -5 307 1 1800 152 74 3 chr12 128951743 128952053 -15330436 - L1MB3 LINE L1 -417 5766 5435 363 60 0 0 chr12 128952302 128952352 -15330137 + (TG)n Simple_repeat Simple_repeat 1 50 0 209 150 33 33 chr12 128952407 128952445 -15330044 + T-rich Low_complexity Low_complexity 3 43 -19 866 201 41 12 chr12 128952445 128952614 -15329875 - FAM SINE Alu 0 175 2 209 150 33 33 chr12 128952614 128952635 -15329854 + T-rich Low_complexity Low_complexity 42 62 0 21 82 0 0 chr12 128952635 128952684 -15329805 + AT_rich Low_complexity Low_complexity 1 49 0 606 209 6 23 chr12 128952824 128953001 -15329488 + (CATA)n Simple_repeat Simple_repeat 2 175 0 276 222 0 0 chr12 128953018 128953090 -15329399 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 309 224 92 17 chr12 128953092 128953201 -15329288 + L1MC4 LINE L1 6571 6654 -1131 * 334 258 21 32 chr12 128953140 128953233 -15329256 - L1MC4 LINE L1 -1337 6705 6614 325 217 14 14 chr12 128953226 128953295 -15329194 - L1MCa LINE L1 -4362 2064 1996 * 183 129 0 0 chr12 128953304 128953335 -15329154 + (CA)n Simple_repeat Simple_repeat 2 32 0 573 266 78 7 chr12 128953336 128953490 -15328999 + MIR SINE MIR 31 195 -67 546 296 35 6 chr12 128953579 128953727 -15328762 - L2 LINE L2 -215 3057 2902 1459 136 68 34 chr12 128953727 128953860 -15328629 + L1MA9 LINE L1 6005 6132 -180 1857 113 57 3 chr12 128953860 128954142 -15328347 + AluSg SINE Alu 1 297 -13 1459 136 68 34 chr12 128954142 128954302 -15328187 + L1MA9 LINE L1 6132 6308 -4 546 296 35 6 chr12 128954302 128954322 -15328167 - L2 LINE L2 -370 2902 2884 1494 208 64 72 chr12 128954427 128954764 -15327725 - MLT1D LTR MaLR -9 496 158 1566 168 56 0 chr12 128954764 128955049 -15327440 + AluJb SINE Alu 1 301 -11 1494 208 64 72 chr12 128955049 128955090 -15327399 - MLT1D LTR MaLR -347 158 118 1920 140 13 0 chr12 128955090 128955390 -15327099 - AluSq SINE Alu -9 304 1 1494 208 64 72 chr12 128955390 128955421 -15327068 - MLT1D LTR MaLR -387 118 88 1828 145 3 7 chr12 128955421 128955724 -15326765 - AluSx SINE Alu -10 302 1 1494 208 64 72 chr12 128955724 128955812 -15326677 - MLT1D LTR MaLR -417 88 1 202 246 0 66 chr12 128955814 128955875 -15326614 + MIR SINE MIR 204 260 -2 1734 181 0 0 chr12 128956162 128956461 -15326028 + AluSq SINE Alu 1 299 -14 1229 137 5 10 chr12 128956462 128956659 -15325830 + AluJo SINE Alu 96 291 -21 198 0 0 0 chr12 128956659 128956681 -15325808 + (TA)n Simple_repeat Simple_repeat 2 23 0 1343 166 25 4 chr12 128956761 128957002 -15325487 - AluJo SINE Alu -34 278 33 638 234 41 0 chr12 128957011 128957182 -15325307 - L1MC4 LINE L1 -1988 5820 5643 4709 26 0 2 chr12 128957182 128957725 -15324764 - L1PA4 LINE L1 -5 6150 5609 1355 7 0 0 chr12 128957725 128957874 -15324615 + L1PA4 LINE L1 5476 5624 -531 523 267 169 34 chr12 128957873 128958139 -15324350 - L1MC4 LINE L1 -2155 5653 5352 * 1443 175 4 0 chr12 128958162 128958414 -15324075 - AluJb SINE Alu -13 299 47 1419 113 5 27 chr12 128958522 128958696 -15323793 - AluSg/x SINE Alu -6 306 130 262 0 26 26 chr12 128958696 128958735 -15323754 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2119 48 44 4 chr12 128958735 128959006 -15323483 - AluY SINE Alu -29 282 1 1419 113 5 27 chr12 128959006 128959052 -15323437 - AluSg/x SINE Alu -180 132 90 2954 166 62 49 chr12 128959063 128959110 -15323379 - L1MB4 LINE L1 -1 6179 6134 2076 90 30 0 chr12 128959110 128959409 -15323080 - AluSx SINE Alu -4 308 1 2954 166 62 49 chr12 128959409 128959573 -15322916 - L1MB4 LINE L1 -46 6134 5974 2043 114 0 19 chr12 128959573 128959905 -15322584 - AluSx SINE Alu 0 312 1 2954 166 62 49 chr12 128959905 128960384 -15322105 - L1MB4 LINE L1 -206 5974 5479 184 111 81 20 chr12 128960384 128960483 -15322006 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 282 193 133 0 chr12 128960517 128960600 -15321889 - L1MB4 LINE L1 -709 5474 5381 1719 161 3 10 chr12 128961220 128961511 -15320978 - AluJo SINE Alu -23 289 1 637 149 0 106 chr12 128961962 128962103 -15320386 + AluJo SINE Alu 41 166 -146 1219 181 83 103 chr12 128962421 128962484 -15320005 + L1ME1 LINE L1 5762 5825 -341 2275 105 0 0 chr12 128962484 128962788 -15319701 + AluSx SINE Alu 1 304 -8 1219 181 83 103 chr12 128962788 128962895 -15319594 + L1ME1 LINE L1 5825 5933 -233 1878 154 0 10 chr12 128962895 128963200 -15319289 + AluJo SINE Alu 9 310 -2 1219 181 83 103 chr12 128963200 128963436 -15319053 + L1ME1 LINE L1 5933 6161 -5 1983 133 0 3 chr12 128963472 128963773 -15318716 + AluSx SINE Alu 1 300 -12 2121 108 13 0 chr12 128963774 128964080 -15318409 + AluSg SINE Alu 1 310 0 1729 173 10 3 chr12 128964112 128964412 -15318077 + AluSx SINE Alu 1 302 -10 2063 117 3 0 chr12 128964639 128964938 -15317551 + AluSx SINE Alu 13 312 0 3384 132 59 6 chr12 128964949 128965473 -15317016 + LTR39 LTR ERV1 232 783 0 2069 114 3 7 chr12 128965551 128965848 -15316641 - AluSx SINE Alu -16 296 1 1591 162 0 54 chr12 128966066 128966380 -15316109 + AluJo SINE Alu 1 297 -15 2074 128 0 0 chr12 128966388 128966692 -15315797 + AluSx SINE Alu 1 304 -8 1775 153 7 0 chr12 128967483 128967770 -15314719 - AluJo SINE Alu -23 289 1 2256 196 130 26 chr12 128967779 128968310 -15314179 - MLT1E LTR MaLR 0 593 8 21 0 0 0 chr12 128968847 128968868 -15313621 + AT_rich Low_complexity Low_complexity 1 21 0 2211 86 3 0 chr12 128968953 128969245 -15313244 + AluSx SINE Alu 1 293 -19 320 337 58 34 chr12 128969296 128969501 -15312988 + MLT1K LTR MaLR 96 305 -283 1382 153 50 20 chr12 128969532 128969832 -15312657 - MER33 DNA MER1_type -1 323 15 229 182 18 91 chr12 128969800 128969855 -15312634 - MER3 DNA MER1_type -116 93 43 * 339 323 19 24 chr12 128969939 128970117 -15312372 + MLT1K LTR MaLR 432 588 0 327 173 0 0 chr12 128970209 128970261 -15312228 + FLAM SINE Alu 79 130 -3 1016 198 11 0 chr12 128970267 128970449 -15312040 - MER20 DNA MER1_type 0 219 36 588 188 53 23 chr12 128970680 128970813 -15311676 - AluJo SINE Alu -174 138 2 25 0 0 0 chr12 128970814 128970839 -15311650 + AT_rich Low_complexity Low_complexity 1 25 0 548 277 0 8 chr12 128970843 128970973 -15311516 + L1MC/D LINE L1 5525 5653 -2155 401 175 0 0 chr12 128971005 128971083 -15311406 + AluS SINE Alu 226 303 0 3756 103 32 72 chr12 128971304 128971473 -15311016 + LTR24C LTR ERV1 1 175 -460 2368 78 7 0 chr12 128971473 128971782 -15310707 - AluY SINE Alu 0 311 1 2032 110 32 0 chr12 128971782 128972064 -15310425 - AluSc SINE Alu -14 295 5 3756 103 32 72 chr12 128972064 128972555 -15309934 + LTR24C LTR ERV1 173 635 0 704 194 0 8 chr12 128972631 128972765 -15309724 + FLAM_C SINE Alu 1 133 0 2161 94 3 3 chr12 128972830 128973139 -15309350 + AluY SINE Alu 1 309 -2 659 162 0 0 chr12 128973139 128973244 -15309245 - AluJo/FLAM SINE Alu -203 109 5 926 158 0 0 chr12 128973709 128973842 -15308647 + FLAM_C SINE Alu 1 133 0 328 233 47 23 chr12 128973889 128973975 -15308514 - MIR SINE MIR -71 191 104 1980 203 52 44 chr12 128973987 128974073 -15308416 - L1MB7 LINE L1 -60 6124 6040 2092 116 3 3 chr12 128974073 128974374 -15308115 - AluSx SINE Alu -11 301 1 1980 203 52 44 chr12 128974374 128974785 -15307704 - L1MB7 LINE L1 -144 6040 5623 1122 146 45 59 chr12 128974931 128975090 -15307399 - MER20 DNA MER1_type 0 219 62 2250 98 0 0 chr12 128975090 128975395 -15307094 + AluSx SINE Alu 1 305 -7 1122 146 45 59 chr12 128975395 128975455 -15307034 - MER20 DNA MER1_type -157 62 3 331 237 130 43 chr12 128976071 128976332 -15306157 - MLT1H LTR MaLR 0 549 242 6646 68 20 48 chr12 128976366 128978283 -15304206 - SVA Other Other -518 1386 56 1620 0 0 0 chr12 128978283 128978559 -15303930 + (GGGAGA)n Simple_repeat Simple_repeat 1 276 0 677 241 6 24 chr12 128978570 128978740 -15303749 - MLT1H LTR MaLR -339 210 44 1693 154 7 7 chr12 128978746 128979039 -15303450 - AluJb SINE Alu -11 301 9 220 293 0 0 chr12 128979119 128979177 -15303312 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 295 197 0 49 chr12 128979185 128979246 -15303243 + LTR67 LTR ERVL 500 557 0 1982 111 0 4 chr12 128979475 128979755 -15302734 + AluSx SINE Alu 19 297 -15 1858 144 0 3 chr12 128979981 128980300 -15302189 + AluSx SINE Alu 1 318 0 292 269 0 51 chr12 128980356 128980434 -15302055 + MLT1K LTR MaLR 188 261 -327 1955 91 0 4 chr12 128980486 128980749 -15301740 + AluSx SINE Alu 49 310 -2 1637 149 76 3 chr12 128980832 128981121 -15301368 + AluSx SINE Alu 1 310 -2 2132 109 7 0 chr12 128981200 128981502 -15300987 + AluSc SINE Alu 1 304 -5 1990 131 0 3 chr12 128981753 128982050 -15300439 + AluJo SINE Alu 9 304 -8 1178 207 92 0 chr12 128982643 128982918 -15299571 - MLT1C LTR MaLR 0 467 159 1652 176 4 0 chr12 128982924 128983203 -15299286 + AluJo SINE Alu 1 280 -32 258 274 0 0 chr12 128983222 128983284 -15299205 - MLT1C LTR MaLR -353 114 53 925 189 32 11 chr12 128983417 128983602 -15298887 - LTR16A LTR ERVL 0 450 262 1260 151 5 27 chr12 128983605 128983824 -15298665 + AluJb SINE Alu 1 214 -98 604 231 103 6 chr12 128983840 128983996 -15298493 - LTR16A LTR ERVL -264 186 16 677 121 0 0 chr12 128984243 128984355 -15298134 - AluSg/x SINE Alu 0 302 191 269 234 170 0 chr12 128984475 128984569 -15297920 + L2 LINE L2 3188 3297 -16 1987 136 3 0 chr12 128984574 128984875 -15297614 + AluSx SINE Alu 1 302 -10 673 248 0 0 chr12 128984965 128985098 -15297391 + MER5A DNA MER1_type 3 135 -54 878 132 25 50 chr12 128985098 128985225 -15297264 + MLT1A1 LTR MaLR 1 126 -239 1710 118 0 72 chr12 128985225 128985552 -15296937 - AluSx SINE Alu 0 305 1 878 132 25 50 chr12 128985552 128985582 -15296907 + MLT1A1 LTR MaLR 126 155 -210 2039 87 9 72 chr12 128985584 128985917 -15296572 + AluSx SINE Alu 1 312 0 327 113 0 0 chr12 128985917 128985970 -15296519 + (GGGGA)n Simple_repeat Simple_repeat 4 56 0 489 143 0 13 chr12 128985971 128986048 -15296441 + MLT1A1 LTR MaLR 149 224 -141 349 333 45 8 chr12 128986049 128986181 -15296308 + L2 LINE L2 3172 3308 -5 257 209 225 16 chr12 128986548 128986677 -15295812 - L1ME4a LINE L1 -5 6116 5961 34 84 0 0 chr12 128986750 128986833 -15295656 + AT_rich Low_complexity Low_complexity 1 83 0 598 199 30 23 chr12 128987072 128987203 -15295286 - AluJo SINE Alu -178 134 3 211 182 23 23 chr12 128987320 128987364 -15295125 + MIR SINE MIR 198 241 -21 2161 104 0 19 chr12 128987439 128987746 -15294743 + AluSx SINE Alu 1 301 -11 536 249 27 85 chr12 128987865 128988106 -15294383 - L1ME4a LINE L1 -513 5608 5392 2153 110 3 0 chr12 128988111 128988421 -15294068 - AluSx SINE Alu -1 311 1 210 352 62 23 chr12 128988690 128988818 -15293671 + MIR SINE MIR 84 216 -46 557 194 11 144 chr12 128989133 128989198 -15293291 - MER5B DNA MER1_type 0 178 106 2008 147 0 0 chr12 128989198 128989504 -15292985 + AluSq SINE Alu 1 306 -7 557 194 11 144 chr12 128989504 128989516 -15292973 - MER5B DNA MER1_type -72 106 94 1633 139 50 4 chr12 128989516 128989796 -15292693 + AluJb SINE Alu 1 293 -19 557 194 11 144 chr12 128989796 128989897 -15292592 - MER5B DNA MER1_type -84 94 23 385 291 50 28 chr12 128989898 128990039 -15292450 - MER5A DNA MER1_type -11 178 35 2292 76 13 0 chr12 128990362 128990664 -15291825 - AluSp SINE Alu -7 306 1 1367 131 147 8 chr12 128990842 128991088 -15291401 + AluSg1 SINE Alu 1 301 0 190 0 0 0 chr12 128991088 128991109 -15291380 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1887 154 0 13 chr12 128991115 128991426 -15291063 + AluJo SINE Alu 1 307 -5 224 264 35 104 chr12 128991780 128991855 -15290634 + MER5A DNA MER1_type 1 63 -126 1656 151 4 0 chr12 128991855 128992113 -15290376 + AluJo SINE Alu 1 259 -53 224 264 35 104 chr12 128992113 128992181 -15290308 + MER5A DNA MER1_type 63 134 -55 1851 147 31 0 chr12 128992182 128992474 -15290015 - AluJb SINE Alu -10 302 2 2041 121 0 0 chr12 128992576 128992865 -15289624 - AluSx SINE Alu -23 289 1 879 114 0 50 chr12 128992871 128993011 -15289478 - FLAM_C SINE Alu 0 133 1 410 200 22 33 chr12 128993011 128993101 -15289388 - ORSL DNA AcHobo -186 89 1 228 259 24 35 chr12 128993156 128993241 -15289248 - Charlie4a DNA MER1_type 0 508 425 1942 115 3 19 chr12 128993249 128993348 -15289141 - AluSx SINE Alu 0 312 213 2868 76 0 0 chr12 128993348 128993703 -15288786 + THE1A LTR MaLR 1 355 0 1942 115 3 19 chr12 128993703 128993916 -15288573 - AluSx SINE Alu -99 213 5 566 144 16 24 chr12 128993916 128994041 -15288448 - Charlie4a DNA MER1_type -60 448 325 841 196 52 6 chr12 128994081 128994254 -15288235 - Charlie4a DNA MER1_type -173 335 155 1414 153 0 4 chr12 128994254 128994489 -15288000 + AluJb SINE Alu 71 304 -8 357 165 25 25 chr12 128994497 128994576 -15287913 - Charlie4a DNA MER1_type -365 143 65 865 154 11 63 chr12 128994603 128994778 -15287711 - FRAM SINE Alu 0 166 1 206 268 0 0 chr12 128994993 128995034 -15287455 + L2 LINE L2 3145 3185 -87 1774 175 13 0 chr12 128995166 128995474 -15287015 - AluJo SINE Alu 0 312 1 350 269 65 108 chr12 128995599 128995878 -15286611 + L2 LINE L2 2925 3191 -81 850 135 0 0 chr12 128996264 128996390 -15286099 + FLAM_C SINE Alu 1 126 -17 2090 105 6 13 chr12 128996394 128996727 -15285762 + AluSx SINE Alu 1 312 0 877 133 0 0 chr12 128996950 128997078 -15285411 - AluSg/x SINE Alu -18 294 167 1916 139 0 0 chr12 128997078 128997365 -15285124 + AluSx SINE Alu 14 300 -12 1031 145 13 0 chr12 128997366 128997525 -15284964 + AluSg/x SINE Alu 136 296 -16 314 89 71 18 chr12 128997525 128997581 -15284908 - MER20 DNA MER1_type -158 61 3 1522 152 40 22 chr12 128998299 128998575 -15283914 - AluJo SINE Alu -31 281 1 246 270 14 14 chr12 128998577 128998651 -15283838 + MLT1K LTR MaLR 515 588 0 2361 76 0 0 chr12 128998653 128998955 -15283534 - AluSc SINE Alu -7 302 1 221 316 8 51 chr12 128999190 128999307 -15283182 - MIR SINE MIR -54 208 97 2150 95 0 3 chr12 128999785 129000081 -15282408 + AluSq SINE Alu 1 295 -18 1965 142 0 7 chr12 129000147 129000449 -15282040 - AluJb SINE Alu -12 300 1 958 175 48 32 chr12 129000645 129000777 -15281712 - LTR16C LTR ERVL 0 491 354 2149 82 0 4 chr12 129000777 129001056 -15281433 + AluSp SINE Alu 12 289 -24 958 175 48 32 chr12 129001056 129001104 -15281385 - LTR16C LTR ERVL -137 354 308 913 286 26 60 chr12 129001104 129001303 -15281186 + LTR16A LTR ERVL 1 183 -267 1975 106 7 3 chr12 129001303 129001632 -15280857 - AluSx SINE Alu 0 330 1 913 286 26 60 chr12 129001632 129001816 -15280673 + LTR16A LTR ERVL 183 372 -78 1464 144 0 42 chr12 129001844 129002044 -15280445 - AluJb SINE Alu -60 252 64 1495 85 5 0 chr12 129002044 129002245 -15280244 + AluSp SINE Alu 94 295 -18 1464 144 0 42 chr12 129002245 129002307 -15280182 - AluJb SINE Alu -248 64 1 1520 199 10 0 chr12 129002763 129003055 -15279434 + AluJo SINE Alu 1 295 -17 1590 127 54 137 chr12 129003122 129003320 -15279169 + THE1C LTR MaLR 1 149 -226 1923 130 0 3 chr12 129003320 129003605 -15278884 - AluSx SINE Alu -28 284 1 1590 127 54 137 chr12 129003605 129003815 -15278674 + THE1C LTR MaLR 149 375 0 320 221 0 29 chr12 129003835 129003903 -15278586 - L2 LINE L2 0 3313 3248 1661 236 14 53 chr12 129004396 129004573 -15277916 + LTR16C LTR ERVL 72 254 -237 2363 91 0 0 chr12 129004573 129004881 -15277608 + AluSx SINE Alu 1 308 -4 1661 236 14 53 chr12 129004881 129005140 -15277349 + LTR16C LTR ERVL 254 491 0 194 0 39 0 chr12 129005357 129005383 -15277106 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1818 132 32 0 chr12 129005386 129005666 -15276823 - AluSx SINE Alu -23 289 1 1685 115 4 15 chr12 129006098 129006358 -15276131 - AluSx SINE Alu -1 311 55 1769 164 0 0 chr12 129006399 129006680 -15275809 + L1MB5 LINE L1 5864 6144 -30 1916 137 7 0 chr12 129006680 129006965 -15275524 + AluSx SINE Alu 1 287 -25 358 50 50 0 chr12 129006968 129007028 -15275461 + (TAAAA)n Simple_repeat Simple_repeat 4 66 0 1616 153 10 13 chr12 129007039 129007339 -15275150 + AluJb SINE Alu 1 299 -13 1995 102 3 7 chr12 129007354 129007637 -15274852 + AluSq SINE Alu 6 287 -26 381 165 0 24 chr12 129007651 129007736 -15274753 - Charlie5 DNA MER1_type -2492 120 38 1499 152 144 0 chr12 129008065 129008329 -15274160 + AluJb SINE Alu 1 302 0 2099 93 47 10 chr12 129008845 129009145 -15273344 + AluSp SINE Alu 1 311 -2 2241 88 7 0 chr12 129009236 129009533 -15272956 - AluSx SINE Alu -13 299 1 1301 155 121 11 chr12 129009636 129009900 -15272589 + AluSg1 SINE Alu 1 293 -16 299 127 0 18 chr12 129010217 129010272 -15272217 + (GGGGA)n Simple_repeat Simple_repeat 2 55 0 793 137 0 56 chr12 129010289 129010576 -15271913 + (GGGGA)n Simple_repeat Simple_repeat 1 270 0 2058 108 7 0 chr12 129010665 129010952 -15271537 + AluSx SINE Alu 2 290 -22 1026 160 0 11 chr12 129010953 129011134 -15271355 + AluSq SINE Alu 132 310 -3 2003 128 0 13 chr12 129011136 129011270 -15271219 + AluSg SINE Alu 1 135 -175 2328 74 0 10 chr12 129011270 129011579 -15270910 + AluY SINE Alu 1 306 -5 2003 128 0 13 chr12 129011579 129011750 -15270739 + AluSg SINE Alu 135 302 -8 911 119 182 0 chr12 129011750 129011909 -15270580 - MSTC LTR MaLR -237 191 4 298 167 64 36 chr12 129011924 129012017 -15270472 + MLT1J1 LTR MaLR 347 425 -21 374 350 17 17 chr12 129012314 129012431 -15270058 + L2 LINE L2 3137 3253 -19 186 191 0 0 chr12 129012434 129012481 -15270008 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 1881 131 0 0 chr12 129012936 129013249 -15269240 + AluSx SINE Alu 1 313 0 3235 125 47 73 chr12 129013263 129013310 -15269179 + LTR26 LTR ERV1 3 50 -553 1609 159 33 0 chr12 129013310 129013580 -15268909 + AluJo SINE Alu 12 290 -22 2181 93 0 10 chr12 129013590 129013892 -15268597 + AluY SINE Alu 1 299 -12 3235 125 47 73 chr12 129013892 129014053 -15268436 + LTR26 LTR ERV1 59 223 -380 2218 104 0 0 chr12 129014053 129014352 -15268137 + AluSx SINE Alu 1 299 -13 3235 125 47 73 chr12 129014352 129014748 -15267741 + LTR26 LTR ERV1 223 603 0 2153 111 10 0 chr12 129015123 129015429 -15267060 - AluSp SINE Alu -2 311 3 1830 183 34 26 chr12 129015429 129015807 -15266682 + MLT1D LTR MaLR 125 505 0 4076 142 43 25 chr12 129015844 129016558 -15265931 - LTR8A LTR ERV1 0 727 1 1223 325 50 33 chr12 129016597 129017135 -15265354 - ERVL LTR ERVL -513 5251 4700 1967 137 0 0 chr12 129017135 129017427 -15265062 + AluSx SINE Alu 1 292 -20 1223 325 50 33 chr12 129017427 129017492 -15264997 - ERVL LTR ERVL -1064 4700 4638 648 167 47 60 chr12 129017492 129017636 -15264853 - MER74A LTR ERVL -7 551 410 248 121 0 0 chr12 129017636 129017669 -15264820 + MER41C LTR ERV1 1 33 -521 2152 89 7 3 chr12 129017669 129017961 -15264528 - AluSx SINE Alu -15 297 5 832 279 82 59 chr12 129018403 129018561 -15263928 - ERVL LTR ERVL -879 4606 4453 2343 102 32 51 chr12 129018561 129018718 -15263771 + THE1B LTR MaLR 1 159 -205 2167 101 0 22 chr12 129018718 129019036 -15263453 - AluSp SINE Alu -2 311 1 2163 105 3 0 chr12 129019036 129019332 -15263157 - AluSx SINE Alu -15 297 1 2343 102 32 51 chr12 129019332 129019544 -15262945 + THE1B LTR MaLR 157 364 0 832 279 82 59 chr12 129019544 129019876 -15262613 - ERVL LTR ERVL -1032 4453 4105 201 245 20 0 chr12 129019948 129019997 -15262492 + L2 LINE L2 3256 3305 -8 209 261 92 0 chr12 129020000 129020065 -15262424 - L2 LINE L2 0 3313 3243 1792 121 7 4 chr12 129020072 129020344 -15262145 + AluSx SINE Alu 37 309 -3 195 114 0 0 chr12 129020373 129020408 -15262081 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 243 0 0 0 chr12 129020576 129020603 -15261886 + (TC)n Simple_repeat Simple_repeat 2 28 0 1868 151 3 16 chr12 129020603 129020914 -15261575 - AluJo SINE Alu -5 307 1 2173 122 0 0 chr12 129021184 129021488 -15261001 - AluSx SINE Alu -8 304 1 1333 258 28 40 chr12 129021696 129022095 -15260394 - LTR16A LTR ERVL -38 412 19 2240 169 47 67 chr12 129022199 129022265 -15260224 - L1MB2 LINE L1 0 6171 6105 1639 118 161 0 chr12 129022265 129022520 -15259969 - AluSx SINE Alu -6 296 1 1993 135 0 0 chr12 129022528 129022816 -15259673 - AluJo SINE Alu -24 288 1 2240 169 47 67 chr12 129022816 129023142 -15259347 - L1MB2 LINE L1 -73 6098 5781 477 0 0 0 chr12 129023142 129023195 -15259294 + (TA)n Simple_repeat Simple_repeat 2 54 0 2240 169 47 67 chr12 129023195 129023329 -15259160 - L1MB2 LINE L1 -390 5781 5646 809 175 0 0 chr12 129023465 129023591 -15258898 + FLAM_C SINE Alu 1 126 -7 1792 155 0 3 chr12 129023861 129024169 -15258320 + AluJb SINE Alu 1 307 0 2217 86 0 0 chr12 129024169 129024459 -15258030 + AluSc SINE Alu 2 291 -18 2216 116 0 0 chr12 129024683 129024993 -15257496 - AluSx SINE Alu 0 312 3 1012 151 159 44 chr12 129025455 129025707 -15256782 - AluJo SINE Alu -21 291 11 1178 191 0 5 chr12 129025738 129025948 -15256541 - AluJb SINE Alu -20 292 84 811 119 8 22 chr12 129026710 129026875 -15255614 + AluJb SINE Alu 153 315 0 1940 157 0 0 chr12 129027477 129027782 -15254707 + AluJb SINE Alu 1 305 -7 193 324 54 0 chr12 129027787 129027861 -15254628 - L3b LINE CR1 -171 1412 1335 740 116 0 6 chr12 129027870 129028121 -15254368 + AluSx SINE Alu 1 301 -11 224 267 282 8 chr12 129028123 129028254 -15254235 - L3b LINE CR1 -289 1294 1128 2359 90 0 0 chr12 129028616 129028927 -15253562 - AluSx SINE Alu -1 311 1 2151 96 7 0 chr12 129029379 129029670 -15252819 - AluSx SINE Alu -17 295 3 913 193 0 6 chr12 129029725 129029891 -15252598 + AluJb SINE Alu 137 301 -11 640 189 18 0 chr12 129029900 129030011 -15252478 + FLAM_A SINE Alu 1 113 -29 450 0 0 0 chr12 129030021 129030071 -15252418 + (CA)n Simple_repeat Simple_repeat 1 50 0 182 286 0 48 chr12 129030181 129030244 -15252245 - MIR SINE MIR 0 262 203 2247 81 3 7 chr12 129030259 129030554 -15251935 + AluSg SINE Alu 1 294 -16 911 174 0 0 chr12 129030569 129030724 -15251765 + FRAM SINE Alu 12 166 -10 2806 133 37 44 chr12 129030725 129030850 -15251639 + L1MB3 LINE L1 5606 5730 -453 2282 70 3 7 chr12 129030850 129031151 -15251338 + AluY SINE Alu 1 300 -11 2806 133 37 44 chr12 129031151 129031453 -15251036 + L1MB3 LINE L1 5730 6031 -152 2347 94 0 0 chr12 129031453 129031761 -15250728 - AluSq SINE Alu -5 308 1 2806 133 37 44 chr12 129031761 129031874 -15250615 + L1MB3 LINE L1 6031 6143 -40 1944 137 3 3 chr12 129031874 129032167 -15250322 + AluSx SINE Alu 1 293 -19 2312 80 0 7 chr12 129032171 129032470 -15250019 + AluSg SINE Alu 1 297 -13 573 88 0 0 chr12 129032477 129032557 -15249932 + (GGGA)n Simple_repeat Simple_repeat 4 83 0 200 264 0 19 chr12 129032562 129032615 -15249874 + GA-rich Low_complexity Low_complexity 1 52 0 2377 74 3 6 chr12 129032615 129032926 -15249563 + AluSg SINE Alu 1 310 0 2043 96 3 23 chr12 129033075 129033376 -15249113 - AluSg SINE Alu -15 295 1 857 181 7 7 chr12 129034265 129034435 -15248054 - AluJb SINE Alu 0 308 139 234 391 96 25 chr12 129034550 129034913 -15247576 + L2 LINE L2 2379 2767 -547 1500 155 3 68 chr12 129034933 129035149 -15247340 - AluJb SINE Alu 0 312 123 2002 124 7 0 chr12 129035149 129035458 -15247031 + AluSx SINE Alu 1 311 0 1500 155 3 68 chr12 129035458 129035574 -15246915 - AluJb SINE Alu -189 123 1 970 142 71 22 chr12 129035583 129035766 -15246723 - AluJb SINE Alu -3 309 118 186 239 28 70 chr12 129035976 129036047 -15246442 - MIR SINE MIR -10 252 185 1109 191 5 5 chr12 129036070 129036279 -15246210 + AluJb SINE Alu 84 292 -20 212 311 33 0 chr12 129036280 129036341 -15246148 - L2 LINE L2 -22 3291 3229 436 272 26 9 chr12 129036358 129036472 -15246017 - MIR SINE MIR -144 118 3 2004 94 59 0 chr12 129036517 129036803 -15245686 - AluY SINE Alu -8 303 1 2082 115 7 0 chr12 129036863 129037158 -15245331 - AluSx SINE Alu -12 300 4 1680 179 0 7 chr12 129037330 129037621 -15244868 + AluJo SINE Alu 1 289 -23 2268 90 0 3 chr12 129037631 129037930 -15244559 + AluSg SINE Alu 1 298 -12 2316 102 0 0 chr12 129037930 129038243 -15244246 + AluSq SINE Alu 1 313 0 254 132 19 0 chr12 129038246 129038299 -15244190 + (TA)n Simple_repeat Simple_repeat 2 55 0 1794 161 0 3 chr12 129039295 129039616 -15242873 - AluJb SINE Alu 0 320 1 1800 154 17 3 chr12 129039634 129039932 -15242557 - AluSx SINE Alu -10 302 1 958 148 76 99 chr12 129039953 129040152 -15242337 - MER20 DNA MER1_type -1 218 23 1981 136 3 0 chr12 129040152 129040446 -15242043 + AluSx SINE Alu 1 295 -17 958 148 76 99 chr12 129040446 129040469 -15242020 - MER20 DNA MER1_type -196 23 1 282 276 32 89 chr12 129040488 129040611 -15241878 - MIR3 SINE MIR -44 164 49 566 175 91 21 chr12 129040612 129040755 -15241734 - AluJo SINE Alu -5 307 155 761 136 0 17 chr12 129040756 129040874 -15241615 - AluJo SINE Alu -186 116 1 1642 160 14 14 chr12 129040956 129041259 -15241230 - AluJo SINE Alu 0 303 1 670 249 97 0 chr12 129041272 129041437 -15241052 - MIR SINE MIR -46 216 36 217 171 0 86 chr12 129042502 129042572 -15239917 + MIR SINE MIR 159 222 -40 364 284 23 0 chr12 129042750 129042838 -15239651 + Charlie1a DNA MER1_type 1 90 -1365 5094 162 104 51 chr12 129042875 129043696 -15238793 + Charlie1a DNA MER1_type 73 978 -1783 2226 101 3 14 chr12 129043696 129043993 -15238496 + AluSx SINE Alu 3 296 -16 5094 162 104 51 chr12 129043993 129044359 -15238130 + Charlie1a DNA MER1_type 978 1323 -132 2193 123 0 0 chr12 129044360 129044652 -15237837 - AluSx SINE Alu -20 292 1 279 159 0 0 chr12 129044653 129044697 -15237792 + Charlie1a DNA MER1_type 1411 1454 -1 1832 164 7 10 chr12 129044972 129045265 -15237224 - AluJb SINE Alu -10 302 11 737 144 0 48 chr12 129045272 129045300 -15237189 - FLAM_C SINE Alu -192 120 92 4657 94 6 2 chr12 129045300 129045930 -15236559 - LTR10E LTR ERV1 0 633 1 737 144 0 48 chr12 129045930 129046026 -15236463 - FLAM_C SINE Alu -220 92 2 534 298 68 20 chr12 129046733 129046981 -15235508 + MIR SINE MIR 3 262 0 276 231 0 0 chr12 129047843 129047908 -15234581 + (CCG)n Simple_repeat Simple_repeat 3 67 0 228 135 0 0 chr12 129048025 129048062 -15234427 + (CAG)n Simple_repeat Simple_repeat 3 39 0 217 222 0 56 chr12 129048230 129048434 -15234055 + G-rich Low_complexity Low_complexity 1 192 0 309 191 22 45 chr12 129050565 129050654 -15231835 + L1MB2 LINE L1 6029 6115 -56 25 31 0 0 chr12 129050729 129050761 -15231728 + AT_rich Low_complexity Low_complexity 1 32 0 1508 161 64 14 chr12 129050973 129051253 -15231236 - AluJo SINE Alu -18 294 1 2266 65 0 35 chr12 129051541 129051831 -15230658 - AluY SINE Alu -31 280 1 2256 97 10 7 chr12 129052184 129052484 -15230005 - AluSx SINE Alu -11 301 1 2322 97 0 0 chr12 129053066 129053356 -15229133 - AluSg SINE Alu -20 290 1 1558 175 69 12 chr12 129053356 129053676 -15228813 - L1MC3 LINE L1 -9 7776 7439 2639 44 0 0 chr12 129054273 129054570 -15227919 + AluY SINE Alu 1 297 -14 877 281 91 34 chr12 129054683 129055121 -15227368 - MARNA DNA Mariner -23 563 101 216 135 0 0 chr12 129055238 129055275 -15227214 + (CA)n Simple_repeat Simple_repeat 2 38 0 2339 78 7 0 chr12 129055519 129055814 -15226675 - AluY SINE Alu -14 297 1 494 200 75 56 chr12 129055897 129056057 -15226432 + L2 LINE L2 3147 3309 -4 379 289 79 13 chr12 129056177 129056329 -15226160 + MIR3 SINE MIR 37 198 -10 1800 149 0 0 chr12 129056406 129056668 -15225821 + AluSg SINE Alu 5 266 -44 419 115 0 0 chr12 129056668 129056729 -15225760 + Alu SINE Alu 235 295 -16 1632 168 47 20 chr12 129057355 129057652 -15224837 + AluJo SINE Alu 1 305 -7 338 273 133 0 chr12 129057771 129057921 -15224568 + MIR3 SINE MIR 30 199 -9 229 264 19 0 chr12 129058679 129058732 -15223757 + GA-rich Low_complexity Low_complexity 1 54 0 297 242 180 23 chr12 129059302 129059430 -15223059 + MIR SINE MIR 50 197 -65 2549 81 0 0 chr12 129059807 129060114 -15222375 - AluY SINE Alu -4 307 1 881 99 16 120 chr12 129060269 129060336 -15222153 - L1MB7 LINE L1 -7 6177 6105 1395 174 91 33 chr12 129060336 129060611 -15221878 + AluJo SINE Alu 1 291 -21 881 99 16 120 chr12 129060611 129060734 -15221755 - L1MB7 LINE L1 -79 6105 6007 1004 149 11 17 chr12 129060737 129060911 -15221578 - MLT1B LTR MaLR -215 175 3 372 280 200 50 chr12 129061238 129061442 -15221047 - L2 LINE L2 -7 3306 3041 2189 116 0 7 chr12 129061442 129061745 -15220744 + AluSx SINE Alu 1 301 -11 372 280 200 50 chr12 129061745 129061840 -15220649 - L2 LINE L2 -272 3041 2962 341 207 184 11 chr12 129061855 129061942 -15220547 + L2 LINE L2 3192 3293 -20 2260 105 0 7 chr12 129063386 129063692 -15218797 - AluSq SINE Alu -9 304 1 672 293 75 41 chr12 129063726 129063928 -15218561 - L1ME4a LINE L1 -4 6117 5923 1920 133 23 29 chr12 129063928 129064237 -15218252 - AluSx SINE Alu -5 307 1 672 293 75 41 chr12 129064237 129064593 -15217896 - L1ME3A LINE L1 -198 5923 5540 398 272 17 112 chr12 129064611 129064898 -15217591 + L1ME3A LINE L1 5896 6155 -15 225 0 0 0 chr12 129064909 129064934 -15217555 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1117 276 109 47 chr12 129064934 129065837 -15216652 - L2 LINE L2 -16 3297 2310 2061 154 3 3 chr12 129066715 129067027 -15215462 - AluJb SINE Alu 0 312 1 228 213 49 49 chr12 129067035 129067096 -15215393 - MIR SINE MIR -60 148 88 2357 92 0 0 chr12 129067562 129067854 -15214635 - AluSc SINE Alu -17 292 1 868 248 190 3 chr12 129069648 129069936 -15212553 - MLT1J1 LTR MaLR -122 328 1 193 262 229 0 chr12 129069957 129070018 -15212471 + MIR3 SINE MIR 114 188 -20 383 280 10 0 chr12 129070256 129070356 -15212133 - MLT1J1 LTR MaLR 0 446 346 438 282 87 8 chr12 129070381 129070539 -15211950 + MIR3 SINE MIR 3 167 -41 183 80 0 0 chr12 129071339 129071364 -15211125 + (GGGAA)n Simple_repeat Simple_repeat 4 28 0 2285 103 0 10 chr12 129071597 129071897 -15210592 + AluSx SINE Alu 1 297 -15 396 0 0 0 chr12 129072008 129072052 -15210437 + (TG)n Simple_repeat Simple_repeat 2 45 0 2241 97 0 0 chr12 129072052 129072330 -15210159 - AluSx SINE Alu -34 278 1 257 256 49 37 chr12 129072538 129072620 -15209869 - MIR3 SINE MIR -49 159 77 2250 98 3 0 chr12 129072985 129073272 -15209217 + AluSc SINE Alu 6 293 -16 800 115 39 23 chr12 129073285 129073415 -15209074 + FLAM_C SINE Alu 1 132 -1 3028 204 40 9 chr12 129074458 129075003 -15207486 - L1MB7 LINE L1 -10 6174 5604 1822 147 70 0 chr12 129075003 129075288 -15207201 - AluJo SINE Alu -7 305 1 3028 204 40 9 chr12 129075288 129075388 -15207101 - L1MB7 LINE L1 -580 5604 5509 2343 66 0 14 chr12 129075449 129075764 -15206725 - AluY SINE Alu 0 311 1 238 229 236 36 chr12 129075975 129076062 -15206427 + MIR SINE MIR 95 163 -99 1505 170 4 12 chr12 129076062 129076315 -15206174 + AluJo SINE Alu 47 297 -15 238 229 236 36 chr12 129076315 129076367 -15206122 + MIR SINE MIR 163 262 0 822 194 41 18 chr12 129076660 129076830 -15205659 - MER5B DNA MER1_type -2 176 3 234 245 113 113 chr12 129077119 129077323 -15205166 + MIR SINE MIR 4 207 -55 2645 46 0 0 chr12 129077332 129077635 -15204854 + AluYa5 SINE Alu 1 303 -8 1265 160 0 0 chr12 129077654 129077842 -15204647 + 7SLRNA srpRNA srpRNA 124 311 -9 685 154 0 70 chr12 129078174 129078317 -15204172 - FLAM_A SINE Alu 0 133 1 815 193 72 141 chr12 129078598 129078903 -15203586 + L1MC4 LINE L1 6703 6986 -1056 491 268 107 46 chr12 129079032 129079399 -15203090 + L1MC4 LINE L1 7000 7399 -643 344 217 14 0 chr12 129079499 129079568 -15202921 + MER58C DNA MER1_type 44 113 -102 1959 136 3 3 chr12 129079577 129079863 -15202626 + AluSx SINE Alu 8 293 -19 2507 84 0 0 chr12 129079873 129080184 -15202305 + AluSx SINE Alu 1 311 -1 2213 121 0 16 chr12 129080186 129080500 -15201989 + AluSx SINE Alu 1 309 -3 298 122 40 0 chr12 129080504 129080578 -15201911 + A-rich Low_complexity Low_complexity 2 78 0 351 256 26 60 chr12 129080588 129080705 -15201784 + MER58C DNA MER1_type 103 215 0 771 165 0 0 chr12 129080852 129080973 -15201516 + FLAM_C SINE Alu 3 123 -20 324 111 61 0 chr12 129080973 129081072 -15201417 + (TA)n Simple_repeat Simple_repeat 2 106 0 238 207 0 17 chr12 129081072 129081130 -15201359 + L1MC4 LINE L1 7610 7666 -376 3380 241 105 26 chr12 129081157 129081682 -15200807 + L1MEc LINE L1 36 518 -5697 1201 116 156 0 chr12 129081682 129081881 -15200608 + MER30 DNA MER1_type 1 230 0 3380 241 105 26 chr12 129081881 129082075 -15200414 + L1MEc LINE L1 518 695 -5520 2169 124 3 7 chr12 129082075 129082382 -15200107 + AluSx SINE Alu 1 306 -6 3380 241 105 26 chr12 129082382 129082566 -15199923 + L1MEc LINE L1 695 863 -5352 2094 124 0 3 chr12 129082566 129082868 -15199621 + AluSx SINE Alu 1 301 0 3380 241 105 26 chr12 129082868 129083166 -15199323 + L1MEc LINE L1 863 1353 -4862 22 0 0 0 chr12 129083226 129083248 -15199241 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr12 129083250 129083275 -15199214 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1329 164 139 8 chr12 129083277 129083392 -15199097 - AluSg1 SINE Alu -33 276 177 234 0 0 0 chr12 129083392 129083418 -15199071 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1329 164 139 8 chr12 129083418 129083546 -15198943 - AluSg1 SINE Alu -132 177 1 2489 52 7 13 chr12 129083610 129083918 -15198571 - AluY SINE Alu -5 306 1 308 250 0 0 chr12 129083918 129083986 -15198503 + LTR41 LTR ERVL 109 176 -597 314 203 27 0 chr12 129084196 129084270 -15198219 + L1MA10 LINE L1 6258 6333 -1 2242 126 0 0 chr12 129084403 129084705 -15197784 - AluSx SINE Alu -9 303 2 2187 104 27 3 chr12 129085592 129085890 -15196599 - AluSg SINE Alu -5 305 1 309 216 68 0 chr12 129086069 129086143 -15196346 - MIR SINE MIR -96 166 88 2059 126 3 10 chr12 129086961 129087270 -15195219 + AluSx SINE Alu 1 307 -5 708 190 0 63 chr12 129087295 129087437 -15195052 + FLAM_A SINE Alu 1 133 0 422 257 92 9 chr12 129088120 129088229 -15194260 - MER103 DNA DNA -48 118 1 1726 121 62 7 chr12 129088242 129088515 -15193974 - AluSq SINE Alu -25 288 1 1029 166 55 9 chr12 129088571 129088788 -15193701 - L1MA9 LINE L1 0 6312 6086 269 249 94 78 chr12 129089095 129089240 -15193249 - MIR SINE MIR -61 147 32 2320 71 0 4 chr12 129089772 129090052 -15192437 - AluY SINE Alu -12 299 21 2068 130 7 7 chr12 129090378 129090670 -15191819 + AluJo SINE Alu 1 292 -20 24 0 0 0 chr12 129090890 129090914 -15191575 + AT_rich Low_complexity Low_complexity 1 24 0 359 289 58 31 chr12 129091153 129091314 -15191175 - L1ME4a LINE L1 -11 6110 5940 2262 94 7 7 chr12 129091314 129091613 -15190876 - AluSc SINE Alu -10 299 1 359 289 58 31 chr12 129091613 129091676 -15190813 - L1ME4a LINE L1 -181 5940 5880 2358 63 0 47 chr12 129091936 129092255 -15190234 - AluY SINE Alu -7 304 1 326 288 23 53 chr12 129092268 129092400 -15190089 - L1MC5 LINE L1 -542 7419 7292 1210 220 48 17 chr12 129093164 129093455 -15189034 - MLT1E1 LTR MaLR -66 588 289 2079 134 0 0 chr12 129093622 129093928 -15188561 + AluSx SINE Alu 1 306 -6 613 245 80 51 chr12 129093929 129094166 -15188323 - MIR SINE MIR -16 246 3 851 205 113 135 chr12 129094247 129094804 -15187685 - L1ME3A LINE L1 -30 6140 5596 362 231 0 83 chr12 129094782 129094890 -15187599 - L1ME4a LINE L1 -431 5690 5592 * 2208 108 0 0 chr12 129095162 129095459 -15187030 + AluSx SINE Alu 1 297 -15 277 279 0 0 chr12 129095697 129095758 -15186731 + L2 LINE L2 3207 3267 -5 508 235 85 19 chr12 129097311 129097488 -15185001 + MIR SINE MIR 75 256 -6 2248 94 3 0 chr12 129097584 129097892 -15184597 + AluSx SINE Alu 1 309 -3 2445 78 0 0 chr12 129097926 129098234 -15184255 + AluSg SINE Alu 1 308 -2 1822 136 40 3 chr12 129098659 129098960 -15183529 - AluSx SINE Alu 0 312 1 1670 163 43 7 chr12 129098983 129099284 -15183205 - AluJb SINE Alu 0 312 1 1852 139 10 3 chr12 129099320 129099615 -15182874 - AluSx SINE Alu -15 297 1 1521 225 53 137 chr12 129100011 129101091 -15181398 - L2 LINE L2 -30 3283 2293 2295 84 0 0 chr12 129101091 129101388 -15181101 + AluSx SINE Alu 1 297 -15 1521 225 53 137 chr12 129101388 129101441 -15181048 - L2 LINE L2 -1020 2293 2237 641 329 52 5 chr12 129101566 129101779 -15180710 + MIR SINE MIR 25 247 -15 339 375 102 25 chr12 129102360 129102683 -15179806 - L2 LINE L2 -1 3271 2924 3237 22 0 0 chr12 129103175 129103546 -15178943 - L1P LINE L1 -1193 4953 4583 7870 19 5 0 chr12 129103546 129104496 -15177993 + L1PA3 LINE L1 5197 6150 -5 703 227 64 6 chr12 129105007 129105179 -15177310 - MIR SINE MIR -24 238 57 186 231 0 0 chr12 129105216 129105255 -15177234 + L2 LINE L2 3186 3224 -48 298 256 51 0 chr12 129106021 129106099 -15176390 + MIR3 SINE MIR 118 199 -9 465 259 29 7 chr12 129106182 129106321 -15176168 - MIR SINE MIR -43 219 78 23 0 0 0 chr12 129106545 129106568 -15175921 + AT_rich Low_complexity Low_complexity 1 23 0 595 191 0 9 chr12 129106753 129106858 -15175631 - FAM SINE Alu -15 170 67 408 216 52 0 chr12 129106998 129107095 -15175394 + U13 snRNA snRNA 1 102 -2 396 199 110 88 chr12 129107170 129107306 -15175183 + MIR3 SINE MIR 68 206 -2 226 275 29 14 chr12 129107321 129107390 -15175099 + L2 LINE L2 3234 3303 -10 282 310 112 86 chr12 129107527 129107875 -15174614 - L2 LINE L2 -1 3271 2915 467 270 119 18 chr12 129108063 129108433 -15174056 - L1MEd LINE L1 -4864 1255 950 1466 187 63 44 chr12 129108436 129108823 -15173666 - L1ME LINE L1 -572 5592 5201 2507 61 0 3 chr12 129108823 129109135 -15173354 - AluY SINE Alu 0 311 1 1466 187 63 44 chr12 129109135 129109189 -15173300 - L1ME LINE L1 -963 5201 5149 1661 160 38 3 chr12 129109212 129109500 -15172989 - AluSx SINE Alu -14 298 1 347 264 71 89 chr12 129109500 129109600 -15172889 - L1MEd LINE L1 -5164 955 855 2023 108 0 51 chr12 129109600 129109914 -15172575 - AluSg SINE Alu -12 298 1 347 264 71 89 chr12 129109914 129110207 -15172282 - L1MEd LINE L1 -5264 855 569 * 3811 168 85 60 chr12 129110206 129110496 -15171993 - L1MC4a LINE L1 -5 7807 7526 1949 90 0 11 chr12 129110496 129110793 -15171696 - AluSg SINE Alu 0 311 18 3811 168 85 60 chr12 129110793 129110806 -15171683 - L1MC4a LINE L1 -286 7526 7515 201 39 0 0 chr12 129110806 129110832 -15171657 + (TCCCC)n Simple_repeat Simple_repeat 5 30 0 3811 168 85 60 chr12 129110832 129111339 -15171150 - L1MC4a LINE L1 -297 7515 7022 2085 110 3 26 chr12 129111339 129111648 -15170841 - AluSx SINE Alu -10 302 1 1984 98 17 17 chr12 129111651 129111946 -15170543 - AluSp SINE Alu -13 300 6 3811 168 85 60 chr12 129111946 129112419 -15170070 - L1MC4a LINE L1 -791 7021 6597 1197 111 0 18 chr12 129112459 129112630 -15169859 + AluSq SINE Alu 1 168 -145 2036 92 0 17 chr12 129112643 129112936 -15169553 - AluSx SINE Alu -14 298 11 295 213 129 32 chr12 129113059 129113165 -15169324 + L1ME4a LINE L1 5714 5841 -280 1912 126 7 11 chr12 129113165 129113451 -15169038 + AluSx SINE Alu 1 285 -27 295 213 129 32 chr12 129113451 129113499 -15168990 + L1ME4a LINE L1 5841 5883 -238 711 271 95 42 chr12 129114317 129114653 -15167836 + L1ME LINE L1 5468 5793 -328 2373 76 7 0 chr12 129115007 129115311 -15167178 + AluSg SINE Alu 1 306 -4 785 91 100 0 chr12 129115761 129115871 -15166618 - AluJb SINE Alu -190 122 2 2399 64 0 10 chr12 129116387 129116701 -15165788 - AluY SINE Alu 0 311 1 187 300 0 0 chr12 129116809 129116859 -15165630 + MIR SINE MIR 2 51 -211 2258 94 0 0 chr12 129117151 129117459 -15165030 - AluSx SINE Alu -4 308 1 2021 115 3 37 chr12 129117645 129117830 -15164659 - AluSx SINE Alu 0 312 122 207 0 0 0 chr12 129117830 129117853 -15164636 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2112 90 0 21 chr12 129117853 129118142 -15164347 - AluSg SINE Alu -27 283 1 2021 115 3 37 chr12 129118142 129118278 -15164211 - AluSx SINE Alu -188 124 1 1809 143 0 20 chr12 129118280 129118581 -15163908 - AluJb SINE Alu -17 295 1 323 241 352 7 chr12 129118599 129118744 -15163745 + MIR SINE MIR 58 252 -10 181 182 91 0 chr12 129119999 129120043 -15162446 - MIR SINE MIR 0 262 215 384 318 9 0 chr12 129120745 129120855 -15161634 + MIR SINE MIR 126 236 -26 226 437 0 0 chr12 129124692 129124779 -15157710 - MIR SINE MIR -71 137 51 243 354 42 0 chr12 129125874 129125970 -15156519 + MIR SINE MIR 33 132 -76 1969 107 36 0 chr12 129127102 129127382 -15155107 + AluSx SINE Alu 1 290 -22 217 302 104 0 chr12 129127592 129127688 -15154801 + MIR3 SINE MIR 100 205 -3 275 286 120 74 chr12 129127780 129127997 -15154492 + L3b LINE CR1 1258 1484 -99 201 257 238 9 chr12 129128034 129128139 -15154350 + MIR SINE MIR 20 148 -60 1668 230 161 20 chr12 129128254 129128898 -15153591 - L1ME3A LINE L1 -3 6167 5433 1462 216 68 72 chr12 129128927 129129302 -15153187 - L1MC5 LINE L1 -49 7912 7537 2235 84 7 0 chr12 129129302 129129598 -15152891 - AluSq SINE Alu -15 298 1 1462 216 68 72 chr12 129129598 129129703 -15152786 - L1MC5 LINE L1 -424 7537 7433 2139 111 3 0 chr12 129129703 129130010 -15152479 - AluSx SINE Alu -4 308 1 1462 216 68 72 chr12 129130010 129130143 -15152346 - L1MC5 LINE L1 -528 7433 7300 1902 136 3 14 chr12 129131447 129131742 -15150747 - AluSx SINE Alu -20 292 1 2279 57 27 0 chr12 129132479 129132779 -15149710 - AluY SINE Alu -3 308 1 311 390 12 0 chr12 129132796 129132965 -15149524 + CT-rich Low_complexity Low_complexity 1 171 0 1730 165 37 0 chr12 129133956 129134253 -15148236 - AluJb SINE Alu -4 308 1 2020 129 0 0 chr12 129134445 129134732 -15147757 + AluSx SINE Alu 1 287 -25 221 278 87 43 chr12 129135449 129135564 -15146925 - L2 LINE L2 -16 3256 3137 363 317 125 54 chr12 129136535 129136926 -15145563 + L2 LINE L2 2852 3270 -2 189 289 40 94 chr12 129137132 129137281 -15145208 - MIR SINE MIR -49 213 73 396 281 41 8 chr12 129138210 129138331 -15144158 - LTR67 LTR ERVL -2 555 431 261 267 27 0 chr12 129138557 129138632 -15143857 - LTR67 LTR ERVL -479 78 2 184 260 70 50 chr12 129138797 129138897 -15143592 - L2 LINE L2 -849 2465 2364 264 59 0 0 chr12 129139710 129139744 -15142745 + (CCCCCA)n Simple_repeat Simple_repeat 1 34 0 2243 89 10 0 chr12 129139913 129140217 -15142272 - AluSq SINE Alu -6 307 1 1137 240 95 32 chr12 129140274 129140829 -15141660 - L1MC5 LINE L1 -26 7935 7342 1744 167 0 3 chr12 129140829 129141122 -15141367 - AluJb SINE Alu -20 292 1 1840 136 48 0 chr12 129141143 129141437 -15141052 - AluJb SINE Alu -4 308 1 189 74 0 0 chr12 129141440 129141467 -15141022 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 1729 103 0 0 chr12 129141499 129141731 -15140758 - AluSx SINE Alu -80 232 1 1495 176 44 20 chr12 129141822 129142118 -15140371 - AluJb SINE Alu -9 303 1 1857 124 25 0 chr12 129142198 129142521 -15139968 - AluSx SINE Alu 0 330 1 2231 101 3 0 chr12 129142562 129142870 -15139619 - AluY SINE Alu -2 309 1 351 240 149 34 chr12 129142876 129143051 -15139438 - MIR SINE MIR -66 196 2 2203 100 0 7 chr12 129143175 129143476 -15139013 + AluSx SINE Alu 1 299 -13 1218 156 193 29 chr12 129143736 129143980 -15138509 + AluSg SINE Alu 5 288 -12 1699 142 55 18 chr12 129144115 129144390 -15138099 + AluJo SINE Alu 20 304 -8 180 0 0 0 chr12 129144567 129144587 -15137902 + (A)n Simple_repeat Simple_repeat 1 20 0 402 273 112 31 chr12 129144965 129145126 -15137363 + MER5B DNA MER1_type 4 177 -1 22 0 0 0 chr12 129145903 129145925 -15136564 + GC_rich Low_complexity Low_complexity 1 22 0 444 279 190 38 chr12 129146367 129146499 -15135990 - L1ME4a LINE L1 -17 6104 5993 2197 83 3 13 chr12 129146499 129146800 -15135689 - AluSp SINE Alu -14 299 2 444 279 190 38 chr12 129146800 129146904 -15135585 - L1ME4a LINE L1 -128 5993 5832 2308 90 0 13 chr12 129146913 129147225 -15135264 - AluSx SINE Alu -4 308 1 2310 68 7 0 chr12 129147238 129147532 -15134957 - AluY SINE Alu -15 296 1 276 30 0 0 chr12 129147840 129147873 -15134616 + (TG)n Simple_repeat Simple_repeat 1 33 0 230 0 33 0 chr12 129147944 129147974 -15134515 + (TG)n Simple_repeat Simple_repeat 1 31 0 2109 87 14 0 chr12 129147974 129148250 -15134239 - AluSp SINE Alu -33 280 1 215 276 58 35 chr12 129148254 129148341 -15134148 + MIR SINE MIR 118 206 -56 180 269 0 19 chr12 129150008 129150060 -15132429 - L2 LINE L2 -8 3264 3214 1203 166 0 28 chr12 129156126 129156343 -15126146 + AluJb SINE Alu 95 305 -7 2479 59 0 3 chr12 129156446 129156752 -15125737 - AluY SINE Alu -6 305 1 233 103 26 0 chr12 129156849 129156888 -15125601 - MIR SINE MIR -85 123 84 581 220 135 24 chr12 129157050 129157280 -15125209 + MIR SINE MIR 3 261 -1 200 355 58 43 chr12 129158862 129159000 -15123489 + MIR SINE MIR 57 196 -66 180 409 11 0 chr12 129159734 129159827 -15122662 - MIR SINE MIR -3 259 166 203 280 40 0 chr12 129160735 129160785 -15121704 + MIR SINE MIR 104 155 -107 220 146 42 0 chr12 129161649 129161697 -15120792 - MIR SINE MIR -133 129 80 327 321 124 29 chr12 129162627 129162836 -15119653 - L2 LINE L2 -37 3276 3048 236 286 125 0 chr12 129162871 129162983 -15119506 + MER112 DNA MER1_type 135 260 0 326 297 77 51 chr12 129163057 129163230 -15119259 - L2 LINE L2 -479 2835 2655 1746 118 48 11 chr12 129163230 129163502 -15118987 - AluJb SINE Alu -30 282 1 326 297 77 51 chr12 129163502 129163523 -15118966 - L2 LINE L2 -659 2655 2636 243 347 91 40 chr12 129163616 129163815 -15118674 - L2 LINE L2 -120 3152 2944 1105 181 22 58 chr12 129164029 129164210 -15118279 + MER20 DNA MER1_type 1 174 -45 2381 60 20 0 chr12 129164210 129164509 -15117980 + AluY SINE Alu 1 305 -6 1105 181 22 58 chr12 129164509 129164553 -15117936 + MER20 DNA MER1_type 174 218 -1 461 294 98 0 chr12 129164874 129165037 -15117452 - MIR SINE MIR -3 259 81 2231 105 10 0 chr12 129165150 129165455 -15117034 - AluSc SINE Alu -1 308 1 2303 91 0 0 chr12 129165557 129165855 -15116634 - AluSg SINE Alu -12 298 1 405 368 43 12 chr12 129165867 129166125 -15116364 + L1MC/D LINE L1 5372 5637 -2171 2402 97 0 0 chr12 129166153 129166463 -15116026 + AluSx SINE Alu 1 310 -2 272 209 134 0 chr12 129167470 129167537 -15114952 - MIR3 SINE MIR -23 185 110 2430 61 3 0 chr12 129167740 129168035 -15114454 + AluSp SINE Alu 1 296 -17 1151 189 0 0 chr12 129168037 129168227 -15114262 - AluJo SINE Alu -36 276 87 982 112 0 14 chr12 129168227 129168370 -15114119 - FLAM_C SINE Alu 0 143 3 228 308 83 25 chr12 129168544 129168664 -15113825 - MIR SINE MIR -106 156 30 1311 179 144 11 chr12 129168859 129169122 -15113367 - AluJo SINE Alu -3 299 2 214 349 46 9 chr12 129169601 129169710 -15112779 + L2 LINE L2 3197 3309 -4 2284 72 0 7 chr12 129169968 129170260 -15112229 + AluSc SINE Alu 1 290 -19 2122 104 14 3 chr12 129170549 129170846 -15111643 - AluSx SINE Alu -12 300 1 1964 143 7 0 chr12 129171002 129171295 -15111194 - AluJo SINE Alu -15 297 3 1351 182 58 45 chr12 129171298 129171460 -15111029 - AluJo SINE Alu -7 295 126 2306 83 0 7 chr12 129171460 129171760 -15110729 - AluSx SINE Alu -14 298 1 1351 182 58 45 chr12 129171760 129171888 -15110601 - AluJo SINE Alu -176 126 1 397 290 0 0 chr12 129171893 129171993 -15110496 + MIR SINE MIR 49 148 -60 2496 55 0 0 chr12 129172105 129172414 -15110075 + AluY SINE Alu 1 309 -2 211 258 15 30 chr12 129172519 129172585 -15109904 - MIR SINE MIR -6 256 192 277 221 0 126 chr12 129172601 129172666 -15109823 + MIR SINE MIR 59 110 -152 2153 112 3 0 chr12 129172666 129172961 -15109528 - AluSq SINE Alu -17 296 1 277 221 0 126 chr12 129172961 129172990 -15109499 + MIR SINE MIR 110 141 -121 422 233 0 0 chr12 129174210 129174296 -15108193 - L2 LINE L2 0 3313 3228 466 257 79 7 chr12 129174386 129174538 -15107951 - MIR SINE MIR -2 260 98 483 291 0 0 chr12 129174546 129174673 -15107816 - MIR SINE MIR -31 231 105 694 282 68 13 chr12 129174685 129174919 -15107570 - MIR SINE MIR -1 261 15 58 74 0 0 chr12 129175042 129175163 -15107326 + GC_rich Low_complexity Low_complexity 1 121 0 27 29 0 0 chr12 129175219 129175253 -15107236 + GC_rich Low_complexity Low_complexity 1 34 0 1003 57 0 0 chr12 129176443 129176567 -15105922 + AluSp/q SINE Alu 175 298 -15 270 249 132 0 chr12 129176745 129176916 -15105573 - L1ME LINE L1 -213 5908 5700 258 283 53 35 chr12 129177247 129177360 -15105129 + MIR SINE MIR 29 143 -119 2167 87 23 3 chr12 129177692 129177991 -15104498 + AluSg SINE Alu 1 305 -5 474 227 38 53 chr12 129178763 129178792 -15103697 - L2 LINE L2 0 3313 3285 2374 76 0 10 chr12 129178792 129179095 -15103394 + AluSc SINE Alu 1 300 -9 474 227 38 53 chr12 129179095 129179197 -15103292 - L2 LINE L2 -28 3285 3184 546 252 43 0 chr12 129179203 129179342 -15103147 - L2 LINE L2 0 3313 3169 233 275 25 12 chr12 129180049 129180129 -15102360 + L2 LINE L2 3194 3274 -39 940 204 133 0 chr12 129180323 129180563 -15101926 + Charlie1b DNA MER1_type 1 272 -251 1651 148 6 89 chr12 129180570 129180753 -15101736 - AluJo SINE Alu -2 310 166 2040 124 0 26 chr12 129180753 129181059 -15101430 - AluSx SINE Alu -14 298 1 1651 148 6 89 chr12 129181059 129181213 -15101276 - AluJo SINE Alu -146 166 1 327 278 0 0 chr12 129181215 129181312 -15101177 + Charlie1b DNA MER1_type 400 496 -27 1676 148 0 41 chr12 129181313 129181457 -15101032 + AluJo SINE Alu 1 129 -183 2054 121 0 33 chr12 129181457 129181763 -15100726 + AluSx SINE Alu 1 296 -16 1676 148 0 41 chr12 129181763 129181908 -15100581 + AluJo SINE Alu 129 278 -34 210 283 141 10 chr12 129182473 129182572 -15099917 + MIR SINE MIR 35 146 -62 317 273 139 74 chr12 129182778 129182994 -15099495 - MIR SINE MIR -12 250 21 1787 62 90 0 chr12 129183323 129183567 -15098922 - AluSx SINE Alu -3 309 44 557 237 139 0 chr12 129183999 129184172 -15098317 + MIR SINE MIR 2 198 -64 386 200 47 0 chr12 129184247 129184332 -15098157 - MIR3 SINE MIR -39 169 81 247 160 0 40 chr12 129185008 129185058 -15097431 + L3 LINE CR1 1525 1572 -5 863 167 8 0 chr12 129186726 129186858 -15095631 - FLAM_C SINE Alu 0 133 1 2251 81 3 7 chr12 129186907 129187205 -15095284 - AluSp SINE Alu -16 297 1 2158 65 44 3 chr12 129187404 129187697 -15094792 - AluY SINE Alu -6 305 1 553 247 92 4 chr12 129188196 129188435 -15094054 + L2 LINE L2 2807 3066 -247 503 301 52 0 chr12 129189525 129189678 -15092811 - MIR3 SINE MIR -24 184 24 1042 148 0 0 chr12 129190184 129190346 -15092143 - FRAM SINE Alu -14 162 1 198 259 56 0 chr12 129190907 129190961 -15091528 - MIR SINE MIR -48 214 158 183 42 0 0 chr12 129191767 129191791 -15090698 + (TG)n Simple_repeat Simple_repeat 2 25 0 209 300 80 20 chr12 129191966 129192066 -15090423 + MIR3 SINE MIR 5 110 -98 294 301 11 0 chr12 129192221 129192314 -15090175 - MIR SINE MIR -57 151 58 1978 128 16 3 chr12 129192355 129192660 -15089829 + AluSx SINE Alu 1 309 -3 2422 59 7 0 chr12 129193928 129194231 -15088258 - AluSp SINE Alu -8 305 1 1639 75 42 14 chr12 129194374 129194586 -15087903 + AluSg SINE Alu 64 281 -29 267 24 73 0 chr12 129194586 129194627 -15087862 + A-rich Low_complexity Low_complexity 2 180 0 571 233 89 85 chr12 129194705 129194963 -15087526 - MIR SINE MIR 0 262 4 288 300 93 14 chr12 129195936 129196076 -15086413 + L1MC5 LINE L1 7766 7916 -45 285 258 22 11 chr12 129196624 129196713 -15085776 - L2 LINE L2 -13 3259 3170 2005 146 7 13 chr12 129197596 129197904 -15084585 + AluSx SINE Alu 1 306 -6 2031 155 0 3 chr12 129197913 129198210 -15084279 + AluJo SINE Alu 1 296 -16 192 307 87 87 chr12 129198348 129198579 -15083910 + L2 LINE L2 2950 3180 -92 460 304 56 76 chr12 129200108 129200613 -15081876 + L2 LINE L2 2809 3305 -8 2396 96 0 0 chr12 129200613 129200915 -15081574 + AluY SINE Alu 1 302 -9 293 278 104 35 chr12 129201579 129201723 -15080766 + L1ME4a LINE L1 5968 6121 0 2446 86 3 0 chr12 129201869 129202173 -15080316 + AluSx SINE Alu 1 305 -7 230 294 40 63 chr12 129202210 129202336 -15080153 - L1ME LINE L1 -387 5734 5612 1860 173 3 0 chr12 129202549 129202838 -15079651 - AluJb SINE Alu -16 296 7 375 258 66 13 chr12 129204344 129204495 -15077994 + L1ME4a LINE L1 5695 5853 -268 2364 93 3 0 chr12 129204553 129204853 -15077636 + AluSx SINE Alu 1 301 -11 714 210 0 73 chr12 129204910 129205115 -15077374 - AluJb SINE Alu -3 309 120 21 36 0 0 chr12 129205136 129205164 -15077325 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 129205267 129205287 -15077202 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 505 56 14 0 chr12 129206019 129206090 -15076399 - AluS SINE Alu -229 83 12 282 272 26 18 chr12 129206130 129206244 -15076245 - L1M4 LINE L1 -3563 2583 2469 188 338 50 12 chr12 129207175 129207255 -15075234 + MIR3 SINE MIR 78 160 -48 1498 179 4 4 chr12 129207388 129207639 -15074850 - AluJo SINE Alu -12 300 50 1091 158 0 18 chr12 129207808 129207972 -15074517 + AluJo SINE Alu 1 161 -151 292 262 0 0 chr12 129207972 129208033 -15074456 + FLAM SINE Alu 56 116 -17 220 345 24 0 chr12 129208373 129208457 -15074032 - L2 LINE L2 -12 3301 3216 2054 132 48 0 chr12 129208883 129209178 -15073311 + AluSc SINE Alu 1 309 0 2688 58 0 0 chr12 129209224 129209534 -15072955 + AluY SINE Alu 1 310 -1 1967 181 3 0 chr12 129210587 129210897 -15071592 - AluJo SINE Alu -1 311 1 282 56 0 0 chr12 129210944 129210980 -15071509 + (CA)n Simple_repeat Simple_repeat 1 36 0 291 71 0 0 chr12 129210982 129211024 -15071465 + (TA)n Simple_repeat Simple_repeat 2 43 0 317 162 0 3 chr12 129211090 129211145 -15071344 - Alu SINE Alu -256 47 1 282 56 0 0 chr12 129211192 129211228 -15071261 + (CA)n Simple_repeat Simple_repeat 1 36 0 270 95 0 0 chr12 129211230 129211272 -15071217 + (TA)n Simple_repeat Simple_repeat 2 43 0 220 325 0 0 chr12 129213131 129213208 -15069281 - MIR SINE MIR -99 163 87 331 196 65 56 chr12 129213208 129213315 -15069174 + MER3 DNA MER1_type 102 209 0 326 131 82 0 chr12 129214368 129214429 -15068060 - MER3 DNA MER1_type -1 208 143 321 245 147 20 chr12 129215781 129215883 -15066606 + L1ME4a LINE L1 5344 5458 -2350 478 324 14 35 chr12 129215961 129216245 -15066244 + L1ME4a LINE L1 5611 5888 -233 2528 67 0 0 chr12 129217299 129217597 -15064892 + AluY SINE Alu 1 298 -13 839 282 49 38 chr12 129219261 129219605 -15062884 - L2 LINE L2 0 3313 2966 194 211 0 19 chr12 129220286 129220338 -15062151 + L2 LINE L2 3204 3254 -18 925 277 126 56 chr12 129220764 129221302 -15061187 + MLT1K LTR MaLR 2 577 -11 1382 149 4 47 chr12 129222413 129222648 -15059841 + AluJb SINE Alu 5 229 -83 225 0 0 0 chr12 129222648 129222673 -15059816 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 351 243 94 77 chr12 129223316 129223497 -15058992 + L1ME4a LINE L1 5924 6107 -14 301 280 110 34 chr12 129223466 129223584 -15058905 + L1MC4 LINE L1 6576 6702 -1340 338 256 89 11 chr12 129223481 129223571 -15058918 - L1MCa LINE L1 -4335 2091 1995 300 266 0 0 chr12 129223555 129223619 -15058870 - L1MC4 LINE L1 -1339 6703 6640 * 2065 92 42 11 chr12 129223620 129223903 -15058586 - AluY SINE Alu -19 292 1 1090 96 0 0 chr12 129223903 129224038 -15058451 - AluSq/x SINE Alu -178 135 1 1968 152 0 20 chr12 129224040 129224342 -15058147 - AluSx SINE Alu -16 296 1 2235 93 7 0 chr12 129224350 129224656 -15057833 - AluSg SINE Alu 0 308 1 26 0 0 0 chr12 129224662 129224688 -15057801 + AT_rich Low_complexity Low_complexity 1 26 0 2368 96 7 3 chr12 129224689 129224991 -15057498 + AluSx SINE Alu 1 303 -9 2478 62 0 0 chr12 129225000 129225290 -15057199 + AluY SINE Alu 10 299 -12 1938 144 0 14 chr12 129225297 129225603 -15056886 + AluJb SINE Alu 1 302 0 360 248 153 15 chr12 129225605 129225626 -15056863 + L1MC4a LINE L1 5798 5815 -1993 2271 91 3 41 chr12 129225626 129225944 -15056545 + AluSp SINE Alu 1 306 -7 360 248 153 15 chr12 129225944 129226124 -15056365 + L1MC4a LINE L1 5815 6027 -1781 2322 65 65 3 chr12 129227582 129227875 -15054614 + AluY SINE Alu 1 311 0 311 222 0 37 chr12 129227889 129227970 -15054519 + L1MC4a LINE L1 5793 5870 -1938 21 0 0 0 chr12 129227976 129227997 -15054492 + AT_rich Low_complexity Low_complexity 1 21 0 2023 108 0 0 chr12 129228078 129228337 -15054152 - AluSg SINE Alu -18 292 34 1254 68 7 0 chr12 129229095 129229242 -15053247 + AluSp SINE Alu 1 148 -165 215 228 34 64 chr12 129229266 129229360 -15053129 - MIR SINE MIR -92 116 20 2038 112 66 3 chr12 129229447 129229733 -15052756 + AluSg SINE Alu 1 304 -6 2212 119 0 3 chr12 129229752 129230045 -15052444 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr12 129230233 129230261 -15052228 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr12 129230295 129230323 -15052166 + AT_rich Low_complexity Low_complexity 1 28 0 1487 120 5 14 chr12 129230512 129230729 -15051760 - AluJo SINE Alu -94 218 4 2175 110 20 0 chr12 129231080 129231372 -15051117 - AluSx SINE Alu -14 298 1 2172 97 45 3 chr12 129231626 129231916 -15050573 - AluSx SINE Alu -10 302 1 2399 90 7 7 chr12 129233078 129233378 -15049111 + AluSc SINE Alu 1 300 -9 2111 114 3 7 chr12 129233431 129233721 -15048768 + AluSx SINE Alu 21 309 -3 309 272 102 7 chr12 129233936 129234083 -15048406 - L1ME4a LINE L1 0 6121 5961 2131 120 17 10 chr12 129235332 129235633 -15046856 - AluSx SINE Alu -9 303 1 683 159 0 24 chr12 129235633 129235840 -15046649 - AluJb SINE Alu -19 293 1 504 270 105 65 chr12 129236460 129236957 -15045532 + L2 LINE L2 2715 3270 -2 254 277 157 0 chr12 129237723 129237806 -15044683 - L2 LINE L2 -5 3267 3172 1379 69 0 0 chr12 129237806 129237965 -15044524 - AluSc SINE Alu -19 290 132 2669 53 0 0 chr12 129237965 129238266 -15044223 - AluY SINE Alu -10 301 1 257 286 0 45 chr12 129238267 129238379 -15044110 - L2 LINE L2 -93 3220 3114 310 247 55 0 chr12 129238424 129238497 -15043992 - L2 LINE L2 -1 3312 3236 2209 78 7 62 chr12 129238593 129238902 -15043587 + AluSp SINE Alu 2 293 -20 2225 94 35 0 chr12 129238902 129239190 -15043299 + AluSc SINE Alu 1 298 -11 2696 35 0 13 chr12 129239274 129239585 -15042904 + AluY SINE Alu 1 307 -4 347 238 12 0 chr12 129239630 129239710 -15042779 + L1ME3A LINE L1 5658 5738 -2070 1914 163 3 3 chr12 129239751 129240057 -15042432 + AluJb SINE Alu 1 306 -6 26 30 0 0 chr12 129240079 129240112 -15042377 + AT_rich Low_complexity Low_complexity 1 33 0 2539 76 3 0 chr12 129240125 129240429 -15042060 + AluSp SINE Alu 1 305 -8 2157 142 0 13 chr12 129240432 129240748 -15041741 + AluSx SINE Alu 1 312 0 283 214 41 92 chr12 129241100 129241198 -15041291 - MIR SINE MIR -80 182 90 2137 111 17 7 chr12 129241223 129241520 -15040969 + AluSx SINE Alu 1 300 -12 272 333 0 0 chr12 129241861 129241930 -15040559 + L2 LINE L2 3205 3273 -40 795 224 94 5 chr12 129243136 129243337 -15039152 - MIR SINE MIR -37 225 7 189 304 18 0 chr12 129243613 129243669 -15038820 + L2 LINE L2 3256 3312 -1 415 241 76 7 chr12 129243709 129243854 -15038635 + L1ME3A LINE L1 6016 6170 0 263 298 131 0 chr12 129244079 129244163 -15038326 - MIR SINE MIR -21 241 147 2216 115 0 0 chr12 129244176 129244464 -15038025 - AluSg SINE Alu -20 290 3 1562 141 0 21 chr12 129244619 129244853 -15037636 + AluJb SINE Alu 1 229 -83 699 106 0 0 chr12 129244853 129244957 -15037532 + AluSg/x SINE Alu 192 295 -15 504 251 190 0 chr12 129245291 129245470 -15037019 - MIR SINE MIR 0 262 50 2293 85 0 10 chr12 129245776 129246083 -15036406 - AluSq SINE Alu -9 304 1 354 260 13 0 chr12 129246090 129246167 -15036322 - MER5A DNA MER1_type -3 186 109 909 131 0 15 chr12 129246168 129246305 -15036184 - AluJb SINE Alu -20 292 158 569 198 26 9 chr12 129246305 129246421 -15036068 - MER5A DNA MER1_type -71 118 1 207 196 0 0 chr12 129246430 129246476 -15036013 + A-rich Low_complexity Low_complexity 1 46 0 2312 91 0 0 chr12 129246719 129247026 -15035463 + AluSx SINE Alu 1 307 -5 2112 92 46 0 chr12 129247148 129247432 -15035057 + AluY SINE Alu 1 297 -14 2241 92 0 10 chr12 129247641 129247936 -15034553 - AluSg SINE Alu -16 294 3 2149 91 20 20 chr12 129247938 129248234 -15034255 - AluSg SINE Alu -14 296 1 2113 136 0 3 chr12 129248264 129248574 -15033915 + AluSx SINE Alu 1 309 -3 1380 120 5 5 chr12 129248613 129248822 -15033667 + AluSg/x SINE Alu 104 312 0 799 189 147 5 chr12 129249069 129249259 -15033230 - MER20 DNA MER1_type -2 217 1 592 300 39 2 chr12 129249460 129249658 -15032831 + MIR SINE MIR 1 210 -52 224 253 69 35 chr12 129249697 129249784 -15032705 - MIR SINE MIR -85 177 88 739 264 160 49 chr12 129250270 129250884 -15031605 - HAL1 LINE L1 0 2507 1826 280 193 18 0 chr12 129250955 129251012 -15031477 - HAL1 LINE L1 -904 1603 1546 2301 79 0 20 chr12 129251013 129251318 -15031171 + AluSg SINE Alu 1 299 -11 2133 112 30 0 chr12 129251330 129251633 -15030856 + AluSq SINE Alu 1 312 -1 1108 66 0 0 chr12 129251638 129251774 -15030715 + AluSq/x SINE Alu 1 136 -176 536 168 132 78 chr12 129251783 129251876 -15030613 + MER3 DNA MER1_type 34 121 -88 2121 112 10 3 chr12 129251876 129252171 -15030318 - AluSq SINE Alu -16 297 1 536 168 132 78 chr12 129252171 129252244 -15030245 + MER3 DNA MER1_type 121 209 0 472 314 62 44 chr12 129252665 129252853 -15029636 - MIR SINE MIR -60 202 14 228 143 24 0 chr12 129252841 129252883 -15029606 + L2 LINE L2 3263 3305 -8 * 1566 129 0 79 chr12 129254063 129254217 -15028272 + AluSq SINE Alu 1 125 -188 1939 127 14 7 chr12 129254217 129254508 -15027981 + AluSg SINE Alu 1 293 -17 1566 129 0 79 chr12 129254508 129254632 -15027857 + AluSq SINE Alu 125 257 -56 1537 152 61 30 chr12 129254957 129255253 -15027236 + AluJo SINE Alu 1 305 -7 192 200 0 0 chr12 129255416 129255466 -15027023 + (CAG)n Simple_repeat Simple_repeat 3 52 0 581 151 0 0 chr12 129256501 129256587 -15025902 - AluSg/x SINE Alu -17 293 208 212 190 152 76 chr12 129256646 129256680 -15025809 - MIR SINE MIR -51 211 181 2193 58 38 10 chr12 129256680 129256972 -15025517 + AluY SINE Alu 1 300 -11 212 190 152 76 chr12 129256972 129257016 -15025473 - MIR SINE MIR -81 181 127 2190 93 0 3 chr12 129258750 129259041 -15023448 + AluSc SINE Alu 1 290 -19 2379 55 0 13 chr12 129260043 129260351 -15022138 - AluY SINE Alu -7 304 1 569 261 115 21 chr12 129260395 129260416 -15022073 + L2 LINE L2 2687 2705 -608 2248 97 0 7 chr12 129260416 129260725 -15021764 + AluSx SINE Alu 1 307 -5 569 261 115 21 chr12 129260725 129261004 -15021485 + L2 LINE L2 2705 3016 -297 1888 176 0 3 chr12 129261007 129261320 -15021169 - AluJb SINE Alu 0 312 1 2216 97 0 3 chr12 129261478 129261776 -15020713 + AluY SINE Alu 1 297 -14 2315 100 3 0 chr12 129261829 129262140 -15020349 - AluSp SINE Alu -1 312 1 2425 76 0 0 chr12 129262252 129262556 -15019933 + AluY SINE Alu 3 306 -5 324 0 0 0 chr12 129262630 129262666 -15019823 + (CA)n Simple_repeat Simple_repeat 2 37 0 2305 87 0 3 chr12 129263039 129263338 -15019151 - AluSp SINE Alu -15 298 1 600 206 88 93 chr12 129263576 129263642 -15018847 + MER58A DNA MER1_type 2 67 -2353 2226 104 3 0 chr12 129263642 129263949 -15018540 + AluSg SINE Alu 1 308 -2 2252 78 0 0 chr12 129263955 129264266 -15018223 + AluY SINE Alu 1 311 0 600 206 88 93 chr12 129264266 129264385 -15018104 + MER58A DNA MER1_type 72 194 -30 225 94 0 0 chr12 129264401 129264433 -15018056 + (A)n Simple_repeat Simple_repeat 1 32 0 2133 118 43 24 chr12 129264730 129265059 -15017430 - MER1B DNA MER1_type 0 337 3 2034 113 0 3 chr12 129265569 129265880 -15016609 - AluSx SINE Alu 0 310 1 645 328 48 18 chr12 129266167 129266396 -15016093 - MIR SINE MIR -26 236 1 274 250 80 0 chr12 129266509 129266621 -15015868 + L1ME4a LINE L1 5774 5894 -227 2398 87 0 0 chr12 129266639 129266948 -15015541 + AluSx SINE Alu 1 309 -3 614 119 0 0 chr12 129267020 129267104 -15015385 - AluJ/FLAM SINE Alu -228 84 1 1341 102 43 77 chr12 129267279 129267359 -15015130 - MER30 DNA MER1_type 0 230 149 2392 56 0 0 chr12 129267359 129267646 -15014843 - AluY SINE Alu -3 308 22 1341 102 43 77 chr12 129267646 129267800 -15014689 - MER30 DNA MER1_type -81 149 4 2149 128 0 0 chr12 129267800 129268098 -15014391 + AluSx SINE Alu 1 298 -14 2084 103 31 0 chr12 129268098 129268387 -15014102 + AluSq SINE Alu 1 299 -14 202 320 115 0 chr12 129268573 129268695 -15013794 + MIR3 SINE MIR 13 148 -60 23 0 0 0 chr12 129271303 129271326 -15011163 + AT_rich Low_complexity Low_complexity 1 23 0 538 134 41 10 chr12 129271326 129271423 -15011066 - FLAM_C SINE Alu -18 125 26 432 191 109 0 chr12 129271436 129271546 -15010943 - MIR SINE MIR -126 136 15 2059 109 0 3 chr12 129271664 129271970 -15010519 + AluSx SINE Alu 1 305 0 359 335 34 34 chr12 129272977 129273153 -15009336 - MIR SINE MIR -59 203 28 186 250 88 15 chr12 129273241 129273309 -15009180 + MIR SINE MIR 49 121 -141 186 133 0 0 chr12 129274744 129274774 -15007715 + (TG)n Simple_repeat Simple_repeat 1 30 0 345 257 63 32 chr12 129275872 129276054 -15006435 + MIR3 SINE MIR 3 186 -65 1986 86 0 80 chr12 129276152 129276465 -15006024 - AluSg SINE Alu -22 288 1 22 70 0 0 chr12 129276487 129276530 -15005959 + AT_rich Low_complexity Low_complexity 1 43 0 2028 137 7 0 chr12 129276610 129276909 -15005580 - AluJo SINE Alu -9 303 3 2348 92 0 6 chr12 129276929 129277243 -15005246 - AluSp SINE Alu -1 312 1 712 269 110 5 chr12 129277302 129277521 -15004968 - MIR SINE MIR -16 246 5 430 219 181 100 chr12 129280685 129280895 -15001594 - MIR SINE MIR -28 234 8 305 286 31 10 chr12 129280917 129281015 -15001474 + L2 LINE L2 3134 3233 -39 2302 53 30 26 chr12 129281729 129282031 -15000458 + AluY SINE Alu 1 303 -8 306 293 43 69 chr12 129283995 129284183 -14998306 - MIR SINE MIR -12 250 68 224 324 29 29 chr12 129284954 129285056 -14997433 - MIR SINE MIR -71 137 36 342 314 89 30 chr12 129285273 129285442 -14997047 + MIR SINE MIR 20 198 -64 297 137 0 0 chr12 129285735 129285786 -14996703 + AluJo SINE Alu 85 135 -167 1874 177 0 0 chr12 129285786 129286085 -14996404 + AluJb SINE Alu 1 299 -13 447 265 108 38 chr12 129288072 129288257 -14994232 + MIR SINE MIR 63 260 -2 456 231 19 9 chr12 129289472 129289580 -14992909 + L2 LINE L2 3162 3270 -43 182 324 88 44 chr12 129289618 129289754 -14992735 + MIR3 SINE MIR 4 145 -63 1676 159 40 14 chr12 129290589 129290885 -14991604 - AluJo SINE Alu -4 308 5 1938 138 10 7 chr12 129291883 129292173 -14990316 - AluSx SINE Alu -21 291 1 1977 139 0 32 chr12 129292690 129293006 -14989483 + AluSx SINE Alu 7 312 0 247 277 126 25 chr12 129293174 129293293 -14989196 + MIR3 SINE MIR 2 132 -76 185 263 53 53 chr12 129293454 129293568 -14988921 + MIR3 SINE MIR 15 128 -80 829 160 70 45 chr12 129294882 129295038 -14987451 - AluJb SINE Alu -15 297 138 2326 90 0 0 chr12 129295042 129295342 -14987147 - AluSg1 SINE Alu -9 300 1 1721 176 11 0 chr12 129295359 129295669 -14986820 - AluJo SINE Alu 0 313 1 198 103 0 0 chr12 129295685 129295714 -14986775 + (TG)n Simple_repeat Simple_repeat 2 30 0 297 0 0 0 chr12 129295716 129295749 -14986740 + (CA)n Simple_repeat Simple_repeat 2 34 0 1422 136 0 5 chr12 129295749 129295955 -14986534 - AluSg/x SINE Alu -36 276 72 2129 122 0 29 chr12 129297733 129297869 -14984620 + AluSx SINE Alu 2 140 -172 2392 78 3 3 chr12 129297869 129298165 -14984324 + AluSg SINE Alu 1 296 -14 2129 122 0 29 chr12 129298165 129298340 -14984149 + AluSx SINE Alu 140 304 -8 428 276 194 25 chr12 129298374 129298570 -14983919 + MER102a DNA MER1_type 97 325 -5 378 263 175 7 chr12 129298578 129298715 -14983774 + MIR SINE MIR 23 182 -80 216 264 110 55 chr12 129300502 129300665 -14981824 - L2 LINE L2 -787 2527 2356 2262 105 17 0 chr12 129301171 129301465 -14981024 + AluSx SINE Alu 1 299 -13 203 304 22 11 chr12 129301689 129301781 -14980708 + L2 LINE L2 2925 3017 -255 1723 183 7 10 chr12 129301975 129302275 -14980214 + AluJo SINE Alu 1 299 -13 196 186 0 23 chr12 129302280 129302323 -14980166 + L2 LINE L2 3015 3056 -216 2173 128 3 13 chr12 129302800 129302932 -14979557 + AluSg1 SINE Alu 1 133 -176 2709 36 0 7 chr12 129302932 129303240 -14979249 + AluY SINE Alu 1 306 -5 2173 128 3 13 chr12 129303240 129303419 -14979070 + AluSg1 SINE Alu 133 309 0 26 0 0 0 chr12 129303419 129303445 -14979044 + AT_rich Low_complexity Low_complexity 1 26 0 2634 52 0 3 chr12 129304073 129304378 -14978111 + AluY SINE Alu 1 304 -7 1562 234 47 23 chr12 129304441 129304672 -14977817 + L1MEc LINE L1 1917 2141 -4255 1558 134 9 126 chr12 129304672 129304812 -14977677 + AluJo SINE Alu 1 156 -146 2250 107 40 0 chr12 129304812 129305112 -14977377 + AluSx SINE Alu 1 312 0 1558 134 9 126 chr12 129305112 129305140 -14977349 + AluJo SINE Alu 156 186 -116 2349 105 0 10 chr12 129305140 129305445 -14977044 + AluSc SINE Alu 1 302 -7 1558 134 9 126 chr12 129305445 129305617 -14976872 + AluJo SINE Alu 186 302 0 1562 234 47 23 chr12 129305617 129305899 -14976590 + L1MEc LINE L1 2141 2442 -3954 1028 204 22 55 chr12 129306412 129306686 -14975803 + L1MEc LINE L1 2385 2649 -3566 441 0 0 0 chr12 129307060 129307109 -14975380 + (CA)n Simple_repeat Simple_repeat 1 49 0 586 274 102 15 chr12 129307225 129307422 -14975067 + MIR SINE MIR 48 261 -1 2163 124 0 0 chr12 129307422 129307736 -14974753 + AluSx SINE Alu 1 314 0 2300 107 0 3 chr12 129309489 129309780 -14972709 + AluSx SINE Alu 1 290 -22 21 0 0 0 chr12 129309782 129309803 -14972686 + AT_rich Low_complexity Low_complexity 1 21 0 2162 127 3 0 chr12 129309803 129310102 -14972387 + AluSx SINE Alu 1 300 -12 2171 102 4 0 chr12 129310111 129310414 -14972075 + AluSx SINE Alu 9 312 0 309 344 31 8 chr12 129310546 129310674 -14971815 - MIR SINE MIR -118 144 14 204 347 97 37 chr12 129310787 129311055 -14971434 - L2 LINE L2 -11 3261 2978 473 273 58 19 chr12 129311356 129311377 -14971112 - Charlie8 DNA MER1_type -178 163 144 1642 92 0 14 chr12 129311377 129311595 -14970894 + AluSg/x SINE Alu 95 309 -1 473 273 58 19 chr12 129311595 129311727 -14970762 - Charlie8 DNA MER1_type -197 144 4 2371 123 0 0 chr12 129311758 129312068 -14970421 + AluSx SINE Alu 1 310 -2 267 258 34 34 chr12 129312153 129312242 -14970247 + MIR SINE MIR 103 191 -71 1199 244 67 75 chr12 129312243 129312437 -14970052 + L1MA9 LINE L1 5743 5937 -252 2152 139 7 0 chr12 129312437 129312746 -14969743 - AluSx SINE Alu -1 311 1 1199 244 67 75 chr12 129312746 129313097 -14969392 + L1MA9 LINE L1 5937 6168 -21 2425 104 0 0 chr12 129313109 129313416 -14969073 - AluSg SINE Alu -3 307 1 2291 103 6 10 chr12 129313983 129314294 -14968195 + AluSg SINE Alu 1 310 0 1883 124 9 84 chr12 129314331 129314654 -14967835 + AluSx SINE Alu 1 299 -13 1654 178 31 3 chr12 129314706 129314993 -14967496 + AluJo SINE Alu 11 305 -7 2208 99 13 22 chr12 129315276 129315588 -14966901 - AluSx SINE Alu -3 309 1 2371 101 0 0 chr12 129316478 129316776 -14965713 + AluSx SINE Alu 1 298 -14 268 251 47 99 chr12 129317297 129317345 -14965144 - L1MC4 LINE L1 -121 7921 7872 2334 106 0 28 chr12 129317345 129317667 -14964822 + AluSp SINE Alu 1 313 0 2261 135 0 0 chr12 129317677 129317988 -14964501 + AluSx SINE Alu 1 311 -1 268 251 47 99 chr12 129317988 129318099 -14964390 - L1MC4 LINE L1 -179 7863 7760 2248 92 37 0 chr12 129318795 129319090 -14963399 + AluSp SINE Alu 1 306 -7 1351 179 0 5 chr12 129319253 129319477 -14963012 + AluJb SINE Alu 3 225 -87 862 217 22 57 chr12 129319525 129319755 -14962734 + MIR SINE MIR 31 252 -10 2051 112 0 0 chr12 129319798 129320057 -14962432 - AluSx SINE Alu -52 260 2 216 213 0 21 chr12 129320464 129320511 -14961978 + MIR SINE MIR 36 81 -181 290 305 251 5 chr12 129321019 129321206 -14961283 + MIR SINE MIR 11 243 -19 381 237 16 129 chr12 129322067 129322253 -14960236 + MIR SINE MIR 20 184 -78 275 174 0 94 chr12 129324306 129324444 -14958045 + C-rich Low_complexity Low_complexity 5 129 0 1919 111 80 0 chr12 129325519 129325807 -14956682 - AluSx SINE Alu -1 311 1 1199 59 0 0 chr12 129325807 129325942 -14956547 - AluSq/x SINE Alu -177 135 1 459 318 65 0 chr12 129326133 129326287 -14956202 - MIR SINE MIR -72 190 27 1542 186 74 18 chr12 129326605 129326944 -14955545 - MLT1A1 LTR MaLR -7 358 1 420 275 106 0 chr12 129327026 129327168 -14955321 + MIR SINE MIR 73 229 -33 2160 123 7 0 chr12 129327214 129327507 -14954982 + AluSx SINE Alu 14 308 -4 435 68 0 0 chr12 129327507 129327566 -14954923 + (GGAA)n Simple_repeat Simple_repeat 1 59 0 2254 102 3 22 chr12 129327609 129327784 -14954705 - AluSx SINE Alu -4 308 140 2695 52 0 0 chr12 129327784 129328094 -14954395 - AluY SINE Alu -1 310 1 2254 102 3 22 chr12 129328094 129328232 -14954257 - AluSx SINE Alu -172 140 1 634 208 7 35 chr12 129328249 129328393 -14954096 + FLAM_A SINE Alu 1 140 -2 2072 118 52 0 chr12 129328395 129328684 -14953805 + AluSq SINE Alu 1 304 -9 2058 120 40 10 chr12 129328689 129328988 -14953501 + AluSx SINE Alu 1 308 -4 1124 123 16 100 chr12 129328988 129329035 -14953454 - MER33 DNA MER1_type -2355 230 181 2258 87 31 0 chr12 129329035 129329322 -14953167 + AluSc SINE Alu 1 296 -13 1124 123 16 100 chr12 129329322 129329457 -14953032 - MER33 DNA MER1_type -2404 181 72 1918 183 0 3 chr12 129329457 129329768 -14952721 - AluJb SINE Alu -2 310 1 1124 123 16 100 chr12 129329768 129329835 -14952654 - MER33 DNA MER1_type -2513 72 1 2403 95 0 0 chr12 129329857 129330163 -14952326 - AluSg SINE Alu -4 306 1 2271 110 7 10 chr12 129330257 129330567 -14951922 + AluSx SINE Alu 1 309 -3 2446 63 3 27 chr12 129330621 129330953 -14951536 + AluY SINE Alu 1 325 0 2337 84 0 0 chr12 129330956 129331240 -14951249 + AluSc SINE Alu 1 284 -25 412 225 194 0 chr12 129331260 129331389 -14951100 + L2 LINE L2 3158 3311 -2 2237 112 16 19 chr12 129331473 129331611 -14950878 + AluSx SINE Alu 1 138 -174 2442 57 20 7 chr12 129331611 129331910 -14950579 + AluSp SINE Alu 1 303 -10 2237 112 16 19 chr12 129331910 129332084 -14950405 + AluSx SINE Alu 138 312 0 762 145 8 0 chr12 129332198 129332315 -14950174 + FLAM_C SINE Alu 1 118 -15 454 291 49 64 chr12 129332391 129332599 -14949890 - L1ME4a LINE L1 -58 6063 5853 1810 174 0 22 chr12 129332599 129332916 -14949573 - AluJb SINE Alu -2 310 1 454 291 49 64 chr12 129332916 129333160 -14949329 - L1ME4a LINE L1 -268 5853 5618 866 128 8 23 chr12 129333367 129333500 -14948989 - FLAM_C SINE Alu -12 131 1 2638 53 0 0 chr12 129333503 129333805 -14948684 - AluY SINE Alu -9 302 1 194 0 0 37 chr12 129333886 129333913 -14948576 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2282 99 0 0 chr12 129333916 129334200 -14948289 - AluSc SINE Alu -25 284 1 183 42 0 0 chr12 129334234 129334258 -14948231 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1919 148 3 26 chr12 129334290 129334594 -14947895 + AluSx SINE Alu 1 297 -15 278 286 107 9 chr12 129334598 129334710 -14947779 + MIR SINE MIR 49 171 -91 2295 118 0 7 chr12 129334749 129335055 -14947434 + AluSx SINE Alu 3 306 -6 272 285 112 50 chr12 129335193 129335435 -14947054 + L2 LINE L2 2449 2705 -609 2039 127 7 3 chr12 129335438 129335721 -14946768 - AluSx SINE Alu -23 289 6 2078 107 0 4 chr12 129335730 129336032 -14946457 - AluSx SINE Alu 0 316 16 8227 94 11 131 chr12 129336053 129337629 -14944860 - SVA Other Other 0 1386 1 308 159 0 0 chr12 129337668 129337712 -14944777 + Alu SINE Alu 1 44 -258 516 253 156 56 chr12 129337745 129338014 -14944475 + L2 LINE L2 3017 3312 -1 190 328 16 0 chr12 129338061 129338125 -14944364 - MIR3 SINE MIR -129 79 15 2554 67 3 13 chr12 129338195 129338507 -14943982 - AluY SINE Alu -2 309 1 183 42 0 0 chr12 129338508 129338532 -14943957 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2246 93 0 4 chr12 129338538 129338818 -14943671 - AluSg SINE Alu -31 279 1 463 293 59 30 chr12 129338818 129339068 -14943421 + L1MC4a LINE L1 5702 5943 -178 2301 81 14 0 chr12 129339068 129339363 -14943126 + AluSq SINE Alu 1 299 -14 463 293 59 30 chr12 129339363 129339376 -14943113 + L1MC4a LINE L1 5943 5683 -438 1896 145 40 10 chr12 129339376 129339679 -14942810 + AluJb SINE Alu 1 312 0 463 293 59 30 chr12 129339679 129339822 -14942667 + L1MC4a LINE L1 5682 5819 -302 2097 119 3 10 chr12 129339826 129340120 -14942369 - AluSg SINE Alu -18 292 1 2318 98 7 3 chr12 129340172 129340479 -14942010 + AluSg SINE Alu 1 308 -2 1367 189 102 0 chr12 129340514 129340779 -14941710 + AluJo SINE Alu 1 292 -20 648 70 0 0 chr12 129341423 129341450 -14941039 + (GGAA)n Simple_repeat Simple_repeat 1 113 0 648 70 0 0 chr12 129341450 129341536 -14940953 + (GGAA)n Simple_repeat Simple_repeat 1 86 0 2299 113 0 0 chr12 129341569 129341880 -14940609 + AluY SINE Alu 1 311 0 292 235 0 130 chr12 129342224 129342243 -14940246 + MIR SINE MIR 50 70 -192 1928 148 3 3 chr12 129342243 129342541 -14939948 + AluJb SINE Alu 1 298 -14 292 235 0 130 chr12 129342541 129342636 -14939853 + MIR SINE MIR 70 149 -113 373 273 18 79 chr12 129342643 129342808 -14939681 + MIR SINE MIR 62 216 -46 341 274 152 10 chr12 129342923 129343120 -14939369 - MIR SINE MIR -2 260 36 2289 112 0 0 chr12 129343411 129343707 -14938782 + AluSx SINE Alu 1 296 -16 2235 117 16 0 chr12 129343718 129344026 -14938463 + AluSp SINE Alu 1 313 0 1095 178 0 11 chr12 129344026 129344206 -14938283 + AluSg/x SINE Alu 134 311 -1 2233 124 7 0 chr12 129344214 129344520 -14937969 + AluSx SINE Alu 3 310 -2 2163 103 0 4 chr12 129344538 129344819 -14937670 + AluSx SINE Alu 14 293 -19 381 296 26 20 chr12 129344840 129344992 -14937497 + L2 LINE L2 2919 3071 -201 2323 91 10 0 chr12 129345094 129345390 -14937099 + AluY SINE Alu 1 299 -12 455 259 63 46 chr12 129345413 129345587 -14936902 - MER5B DNA MER1_type -1 177 1 325 303 63 42 chr12 129345589 129345731 -14936758 - MIR SINE MIR -93 169 25 2398 96 0 0 chr12 129346308 129346601 -14935888 + AluSg SINE Alu 1 293 -17 351 276 91 78 chr12 129346631 129346762 -14935727 + L1ME4a LINE L1 5524 5652 -469 1731 114 4 0 chr12 129346762 129347015 -14935474 + AluSq SINE Alu 57 310 0 351 276 91 78 chr12 129347015 129347265 -14935224 + L1ME4a LINE L1 5652 5933 -188 2566 57 0 7 chr12 129347265 129347565 -14934924 - AluY SINE Alu -13 298 1 351 276 91 78 chr12 129347565 129347757 -14934732 + L1ME4a LINE L1 5933 6121 0 288 68 0 0 chr12 129347851 129347895 -14934594 + L1MB5 LINE L1 6122 6165 -9 1735 141 15 77 chr12 129347895 129348078 -14934411 - AluJb SINE Alu -5 307 151 1697 201 0 16 chr12 129348078 129348391 -14934098 + AluJb SINE Alu 3 310 -2 1735 141 15 77 chr12 129348391 129348534 -14933955 - AluJb SINE Alu -161 151 1 720 221 97 0 chr12 129348638 129348792 -14933697 + MER5A DNA MER1_type 10 178 -11 289 225 0 0 chr12 129348793 129348864 -14933625 - LTR37B LTR ERV1 -384 84 14 2253 76 0 60 chr12 129348865 129349182 -14933307 - AluSg SINE Alu -12 298 1 645 130 20 0 chr12 129349182 129349282 -14933207 - AluSg/x SINE Alu -2 307 206 2192 91 14 3 chr12 129349678 129349974 -14932515 + AluSq SINE Alu 8 306 -7 1323 14 0 0 chr12 129350327 129350471 -14932018 - U4 snRNA snRNA -1 144 1 1956 90 28 10 chr12 129350888 129351176 -14931313 + AluSg SINE Alu 1 293 -17 495 120 80 0 chr12 129351309 129351384 -14931105 + AluY SINE Alu 211 291 -20 1329 14 0 0 chr12 129351661 129351805 -14930684 - U4 snRNA snRNA -1 144 1 2042 164 51 68 chr12 129352170 129352569 -14929920 - L1MB3 LINE L1 0 6183 5779 2155 110 34 3 chr12 129352569 129352861 -14929628 - AluSq SINE Alu -12 301 1 2042 164 51 68 chr12 129352861 129352877 -14929612 - L1MB3 LINE L1 -404 5779 5764 1736 69 190 0 chr12 129352877 129353124 -14929365 - AluSq SINE Alu -9 294 1 1384 140 156 0 chr12 129353131 129353381 -14929108 - AluJb SINE Alu -11 291 3 1974 115 51 14 chr12 129353389 129353684 -14928805 - AluSx SINE Alu -6 306 1 2042 164 51 68 chr12 129353684 129353773 -14928716 - L1MB3 LINE L1 -432 5751 5670 2254 99 0 43 chr12 129353773 129353952 -14928537 - AluSp SINE Alu -4 309 149 219 88 0 0 chr12 129353952 129353986 -14928503 + (TA)n Simple_repeat Simple_repeat 1 34 0 2254 99 0 43 chr12 129353986 129354129 -14928360 - AluSp SINE Alu -164 149 1 2042 164 51 68 chr12 129354129 129354191 -14928298 - L1MB3 LINE L1 -513 5670 5608 1902 119 3 89 chr12 129354348 129354684 -14927805 + AluSx SINE Alu 6 312 0 1931 28 0 0 chr12 129354791 129355004 -14927485 - AluY SINE Alu -18 293 81 2022 128 14 7 chr12 129355072 129355369 -14927120 - AluJb SINE Alu -5 307 9 2445 82 0 0 chr12 129355510 129355793 -14926696 + AluSg SINE Alu 1 286 -24 285 51 0 0 chr12 129355793 129355832 -14926657 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2445 82 0 0 chr12 129355832 129355851 -14926638 + AluSg SINE Alu 285 303 -7 246 128 0 0 chr12 129355884 129355923 -14926566 + (A)n Simple_repeat Simple_repeat 1 39 0 258 214 0 0 chr12 129356062 129356146 -14926343 + A-rich Low_complexity Low_complexity 1 84 0 285 136 0 0 chr12 129356559 129356603 -14925886 - FRAM SINE Alu -46 120 77 1383 75 0 0 chr12 129356617 129356790 -14925699 + AluSp SINE Alu 137 309 -4 1792 132 64 4 chr12 129356894 129357175 -14925314 + AluJb SINE Alu 1 298 -14 2268 78 3 0 chr12 129357194 129357513 -14924976 + AluSg SINE Alu 1 320 0 2279 48 34 24 chr12 129357513 129357835 -14924654 + AluY SINE Alu 2 311 0 2111 128 7 0 chr12 129357837 129358135 -14924354 + AluSx SINE Alu 1 300 -12 2407 136 115 2 chr12 129358135 129358570 -14923919 - LTR64 LTR ERVK -39 519 36 1898 165 0 22 chr12 129358570 129358886 -14923603 + AluJb SINE Alu 1 309 -3 255 202 22 112 chr12 129358976 129359005 -14923484 + MIR3 SINE MIR 102 132 -76 1898 161 0 16 chr12 129359005 129359315 -14923174 - AluJo SINE Alu -7 305 1 255 202 22 112 chr12 129359315 129359374 -14923115 + MIR3 SINE MIR 132 182 -26 201 156 0 0 chr12 129359478 129359510 -14922979 + MER5B DNA MER1_type 86 117 -61 22 35 0 0 chr12 129359524 129359553 -14922936 + AT_rich Low_complexity Low_complexity 1 29 0 2263 113 0 0 chr12 129359632 129359950 -14922539 + AluSg SINE Alu 1 318 0 1088 83 0 0 chr12 129360085 129360218 -14922271 + AluSq/x SINE Alu 1 133 -179 359 83 0 0 chr12 129360252 129360300 -14922189 + L1MA1 LINE L1 6210 6257 -45 204 203 14 58 chr12 129360304 129360359 -14922130 + A-rich Low_complexity Low_complexity 3 59 -9 1944 77 91 44 chr12 129360359 129360656 -14921833 + AluSq SINE Alu 1 311 -2 328 130 0 0 chr12 129360656 129360710 -14921779 + L1MA3 LINE L1 6252 6305 0 204 203 14 58 chr12 129360710 129360722 -14921767 + A-rich Low_complexity Low_complexity 57 68 0 2417 86 0 9 chr12 129361275 129361590 -14920899 - AluSx SINE Alu 0 312 1 2158 117 16 7 chr12 129361765 129362074 -14920415 + AluSx SINE Alu 1 312 0 193 256 0 0 chr12 129362667 129362710 -14919779 + L2 LINE L2 3161 3203 -69 626 270 44 10 chr12 129362713 129362917 -14919572 - LTR16C LTR ERVL -27 464 254 2158 88 65 10 chr12 129362935 129363229 -14919260 + AluSx SINE Alu 1 310 -2 707 214 0 0 chr12 129363241 129363358 -14919131 + FLAM_C SINE Alu 7 123 -20 297 0 0 0 chr12 129363371 129363404 -14919085 + (TA)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr12 129363404 129363427 -14919062 + (T)n Simple_repeat Simple_repeat 1 23 0 2286 101 0 41 chr12 129363439 129363756 -14918733 + AluSx SINE Alu 1 304 -8 1767 175 7 32 chr12 129363775 129363793 -14918696 - AluJo SINE Alu -12 300 283 297 109 0 0 chr12 129363793 129363839 -14918650 + (TG)n Simple_repeat Simple_repeat 1 46 0 1767 175 7 32 chr12 129363839 129364128 -14918361 - AluJo SINE Alu -29 283 1 419 294 70 7 chr12 129364130 129364273 -14918216 - LTR16C LTR ERVL -251 240 89 2653 61 0 0 chr12 129364298 129364608 -14917881 + AluY SINE Alu 1 310 -1 736 197 0 0 chr12 129364620 129364742 -14917747 + FLAM_C SINE Alu 5 126 -17 2335 92 9 22 chr12 129364761 129365078 -14917411 + AluSp SINE Alu 1 313 0 2240 127 0 3 chr12 129365087 129365395 -14917094 + AluSx SINE Alu 1 307 -5 2059 119 14 0 chr12 129365776 129366070 -14916419 + AluSx SINE Alu 1 298 -14 2275 109 6 6 chr12 129366145 129366457 -14916032 + AluSq SINE Alu 1 312 -1 848 152 0 23 chr12 129366592 129366724 -14915765 - FLAM_C SINE Alu -4 129 1 2317 85 7 16 chr12 129366733 129367040 -14915449 - AluSq SINE Alu -9 304 1 2213 80 3 43 chr12 129367456 129367758 -14914731 + AluSp SINE Alu 2 291 -22 345 241 106 29 chr12 129367790 129367960 -14914529 - L1MC5 LINE L1 -37 7924 7742 2489 84 0 3 chr12 129367968 129368277 -14914212 - AluSx SINE Alu -1 311 4 2234 128 3 7 chr12 129368278 129368584 -14913905 - AluSx SINE Alu -7 305 1 576 165 0 0 chr12 129368589 129368680 -14913809 - FRAM SINE Alu -17 159 69 440 131 0 0 chr12 129368716 129368777 -14913712 + AluS SINE Alu 2 62 -251 1397 88 0 0 chr12 129368777 129368958 -14913531 + AluSg/x SINE Alu 127 307 -5 734 181 8 8 chr12 129368958 129369085 -14913404 - AluJo/FLAM SINE Alu -175 127 1 966 145 0 108 chr12 129369137 129369310 -14913179 + AluJo SINE Alu 118 265 -47 2626 27 3 0 chr12 129369310 129369602 -14912887 - AluY SINE Alu -18 293 1 966 145 0 108 chr12 129369602 129369642 -14912847 + AluJo SINE Alu 265 308 -4 2572 65 13 0 chr12 129369644 129369953 -14912536 + AluSp SINE Alu 1 313 0 2441 95 0 9 chr12 129370017 129370332 -14912157 + AluSp SINE Alu 1 312 -1 201 330 90 21 chr12 129370332 129370565 -14911924 - L2 LINE L2 -1257 2057 1809 2035 132 6 16 chr12 129370568 129370879 -14911610 + AluJb SINE Alu 1 308 -4 21 0 0 0 chr12 129371778 129371799 -14910690 + AT_rich Low_complexity Low_complexity 1 21 0 708 120 30 0 chr12 129371809 129371909 -14910580 - U6 snRNA snRNA -4 103 1 1803 178 0 3 chr12 129371918 129372216 -14910273 - AluJb SINE Alu -15 297 1 2258 104 7 3 chr12 129372221 129372510 -14909979 - AluSx SINE Alu -20 292 3 213 39 0 0 chr12 129372511 129372537 -14909952 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2052 103 44 0 chr12 129372537 129372808 -14909681 - AluSx SINE Alu -29 283 1 2456 83 0 13 chr12 129373375 129373510 -14908979 + AluY SINE Alu 1 136 -175 2327 80 20 3 chr12 129373510 129373809 -14908680 + AluY SINE Alu 1 304 -7 2456 83 0 13 chr12 129373809 129373986 -14908503 + AluY SINE Alu 136 309 -2 2006 112 11 4 chr12 129374003 129374305 -14908184 + AluSc SINE Alu 1 304 0 28 0 0 0 chr12 129374333 129374361 -14908128 + AT_rich Low_complexity Low_complexity 1 28 0 1603 62 141 31 chr12 129374361 129374588 -14907901 - AluY SINE Alu -25 286 35 1841 115 4 0 chr12 129374631 129374883 -14907606 + AluSx SINE Alu 40 292 -20 2245 105 3 25 chr12 129374922 129375237 -14907252 + AluSq SINE Alu 1 308 -5 309 296 256 15 chr12 129375354 129375557 -14906932 - MIR SINE MIR -6 256 5 1502 136 178 4 chr12 129376704 129376968 -14905521 - AluJb SINE Alu -2 310 1 207 0 0 0 chr12 129377053 129377076 -14905413 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 23 54 0 0 chr12 129377328 129377365 -14905124 + AT_rich Low_complexity Low_complexity 1 37 0 359 304 88 12 chr12 129377393 129377564 -14904925 + MIR SINE MIR 49 232 -30 370 250 0 0 chr12 129377682 129377754 -14904735 + L2 LINE L2 3242 3313 0 2300 98 13 3 chr12 129377763 129378068 -14904421 + AluSc SINE Alu 1 308 -1 2104 116 0 20 chr12 129378206 129378498 -14903991 - AluSx SINE Alu -26 286 1 2032 144 7 3 chr12 129378557 129378862 -14903627 - AluSx SINE Alu -6 306 1 709 314 68 4 chr12 129378929 129379165 -14903324 + MIR SINE MIR 12 262 0 374 0 0 21 chr12 129379169 129379216 -14903273 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 833 132 0 0 chr12 129379223 129379344 -14903145 - AluJo/FRAM SINE Alu -23 289 169 1068 141 0 0 chr12 129379344 129379493 -14902996 - FRAM SINE Alu -28 148 1 2615 53 0 0 chr12 129379580 129379883 -14902606 + AluY SINE Alu 1 303 -8 481 300 141 14 chr12 129379990 129380210 -14902279 + MIR SINE MIR 13 260 -2 1941 162 0 0 chr12 129380319 129380627 -14901862 + AluSx SINE Alu 1 308 -4 590 168 174 20 chr12 129380998 129381147 -14901342 + MER53 DNA DNA 1 172 -17 2203 128 3 0 chr12 129381148 129381453 -14901036 - AluSq SINE Alu -7 306 1 2217 137 0 0 chr12 129381827 129382133 -14900356 - AluSx SINE Alu -6 306 1 210 37 0 0 chr12 129382210 129382237 -14900252 + (TG)n Simple_repeat Simple_repeat 2 28 0 564 211 19 90 chr12 129382508 129382597 -14899892 - L2 LINE L2 -7 3306 3231 1891 139 52 7 chr12 129382597 129382885 -14899604 + AluSx SINE Alu 1 301 -11 564 211 19 90 chr12 129382885 129382951 -14899538 - L2 LINE L2 -82 3231 3162 1810 178 0 7 chr12 129382951 129383255 -14899234 + AluJo SINE Alu 1 302 -10 674 151 34 0 chr12 129383267 129383386 -14899103 + MIR SINE MIR 70 192 -70 1974 71 109 4 chr12 129383800 129384067 -14898422 - AluSq SINE Alu -18 295 1 25 65 0 0 chr12 129384751 129384797 -14897692 + AT_rich Low_complexity Low_complexity 1 46 0 249 33 0 0 chr12 129384824 129384854 -14897635 + (TTC)n Simple_repeat Simple_repeat 3 32 0 999 95 0 0 chr12 129384912 129385038 -14897451 - AluY SINE Alu -14 297 172 670 219 67 57 chr12 129385066 129385146 -14897343 - L2 LINE L2 -5 3308 3230 423 0 0 0 chr12 129385146 129385193 -14897296 + (TAA)n Simple_repeat Simple_repeat 3 49 0 670 219 67 57 chr12 129385193 129385256 -14897233 - L2 LINE L2 -83 3230 3169 2344 95 0 3 chr12 129385256 129385562 -14896927 + AluY SINE Alu 1 305 -6 670 219 67 57 chr12 129385562 129385627 -14896862 - L2 LINE L2 -144 3169 3097 1207 123 5 96 chr12 129385643 129385913 -14896576 + AluSg/x SINE Alu 83 332 0 781 172 15 15 chr12 129385924 129386058 -14896431 + FRAM SINE Alu 29 162 -14 1096 174 80 14 chr12 129386693 129386906 -14895583 + AluJb SINE Alu 86 312 0 450 312 19 38 chr12 129386974 129387131 -14895358 - MIR3 SINE MIR -51 157 4 2270 96 3 0 chr12 129387230 129387521 -14894968 + AluSp SINE Alu 1 292 -21 2448 62 0 17 chr12 129387555 129387847 -14894642 - AluY SINE Alu -24 287 1 1003 142 90 47 chr12 129387866 129388049 -14894440 - L1MB5 LINE L1 -9 6165 5970 2310 113 7 3 chr12 129388049 129388358 -14894131 - AluSq SINE Alu -3 310 1 1003 142 90 47 chr12 129388358 129388386 -14894103 - L1MB5 LINE L1 -204 5970 5945 247 154 169 15 chr12 129388455 129388468 -14894021 - L1MC3 LINE L1 -317 7468 7458 1855 162 0 29 chr12 129388468 129388658 -14893831 - AluJo SINE Alu -6 306 127 2250 104 0 0 chr12 129388658 129388946 -14893543 + AluY SINE Alu 1 288 -23 1855 162 0 29 chr12 129388946 129389069 -14893420 - AluJo SINE Alu -185 127 2 247 154 169 15 chr12 129389069 129389120 -14893369 - L1MC3 LINE L1 -327 7458 7394 285 51 0 0 chr12 129389120 129389159 -14893330 + (TG)n Simple_repeat Simple_repeat 2 40 0 1109 99 7 0 chr12 129389162 129389303 -14893186 - AluSg/x SINE Alu -37 275 134 2525 88 0 0 chr12 129389303 129389611 -14892878 - AluSc SINE Alu -1 308 1 570 135 21 0 chr12 129389611 129389707 -14892782 - L1MC3 LINE L1 -379 7406 7309 2194 77 54 7 chr12 129389738 129390035 -14892454 + AluY SINE Alu 1 311 0 695 173 58 0 chr12 129390035 129390174 -14892315 - MER3 DNA MER1_type -62 147 1 1882 139 0 0 chr12 129390518 129390777 -14891712 - AluSx SINE Alu -53 259 1 378 229 12 0 chr12 129390847 129390930 -14891559 - MIR SINE MIR -97 165 82 2585 59 13 0 chr12 129391439 129391744 -14890745 - AluSp SINE Alu -4 309 1 621 222 48 111 chr12 129391807 129392059 -14890430 - MIR SINE MIR -6 256 21 202 289 0 0 chr12 129392303 129392355 -14890134 - MER5B DNA MER1_type 0 178 127 999 181 6 0 chr12 129392365 129392525 -14889964 + FRAM SINE Alu 2 162 -14 2281 108 0 7 chr12 129392597 129392893 -14889596 - AluSx SINE Alu -18 294 1 21 0 0 0 chr12 129392897 129392918 -14889571 + AT_rich Low_complexity Low_complexity 1 21 0 2396 95 0 0 chr12 129392923 129393218 -14889271 + AluSp SINE Alu 1 295 -18 180 111 0 0 chr12 129393361 129393388 -14889101 + (T)n Simple_repeat Simple_repeat 1 27 0 601 163 73 16 chr12 129393388 129393511 -14888978 - THE1C LTR MaLR -245 130 1 9272 125 12 45 chr12 129393511 129393879 -14888610 - THE1B-int LTR MaLR 0 1580 1201 8058 58 30 1 chr12 129393879 129394561 -14887928 + LTR13 LTR ERVK 1 721 -286 204 40 0 0 chr12 129394561 129394586 -14887903 + (TC)n Simple_repeat Simple_repeat 2 26 0 8058 58 30 1 chr12 129394586 129394882 -14887607 + LTR13 LTR ERVK 721 1007 0 9272 125 12 45 chr12 129394882 129395202 -14887287 - THE1B-int LTR MaLR -379 1201 872 2121 134 98 15 chr12 129395202 129395538 -14886951 - THE1B LTR MaLR 0 364 1 9272 125 12 45 chr12 129395538 129396461 -14886028 - THE1B-int LTR MaLR -708 872 22 501 111 0 0 chr12 129396459 129396531 -14885958 - THE1-int LTR MaLR -620 960 889 * 1028 170 87 29 chr12 129396531 129396737 -14885752 - THE1B LTR MaLR 0 364 147 1843 114 126 29 chr12 129396753 129397095 -14885394 - THE1C LTR MaLR 0 375 1 231 276 48 0 chr12 129397096 129397201 -14885288 - L1MC5 LINE L1 -160 7801 7692 * 2156 148 74 53 chr12 129397193 129397521 -14884968 - L1MB2 LINE L1 -1 6170 5827 2354 97 0 26 chr12 129397521 129397830 -14884659 - AluSx SINE Alu -11 301 1 2156 148 74 53 chr12 129397830 129397989 -14884500 - L1MB2 LINE L1 -344 5827 5673 237 111 0 0 chr12 129397991 129398027 -14884462 + Alu SINE Alu 1 36 -267 1798 175 102 70 chr12 129398134 129398350 -14884139 + MER34 LTR ERV1 27 235 -307 1939 151 0 10 chr12 129398350 129398649 -14883840 - AluJb SINE Alu -16 296 1 2117 105 20 3 chr12 129398657 129398951 -14883538 - AluSx SINE Alu -13 299 1 1798 175 102 70 chr12 129398951 129399066 -14883423 + MER34 LTR ERV1 241 351 -191 1407 213 9 19 chr12 129399066 129399381 -14883108 - AluJo SINE Alu 0 312 1 1798 175 102 70 chr12 129399381 129399451 -14883038 + MER34 LTR ERV1 351 417 -125 2014 136 7 0 chr12 129399451 129399753 -14882736 - AluSx SINE Alu -8 304 1 1798 175 102 70 chr12 129399753 129399838 -14882651 + MER34 LTR ERV1 417 540 -2 207 0 0 0 chr12 129401218 129401241 -14881248 + (A)n Simple_repeat Simple_repeat 1 23 0 248 270 29 58 chr12 129401443 129401617 -14880872 + G-rich Low_complexity Low_complexity 6 174 0 1540 167 0 65 chr12 129401767 129402091 -14880398 - AluJo SINE Alu -9 303 1 346 224 198 0 chr12 129402094 129402210 -14880279 + L2 LINE L2 2935 3073 -240 2052 118 3 0 chr12 129402426 129402723 -14879766 - AluSx SINE Alu -14 298 1 331 225 41 21 chr12 129402734 129402903 -14879586 - L1ME LINE L1 -344 5818 5571 1615 149 17 23 chr12 129402988 129403290 -14879199 + AluJo SINE Alu 1 300 -12 1964 114 7 32 chr12 129403293 129403601 -14878888 + AluSx SINE Alu 1 300 -12 1392 108 0 28 chr12 129403642 129403856 -14878633 + AluJb SINE Alu 7 214 -98 232 277 62 0 chr12 129403901 129404002 -14878487 - L1ME LINE L1 -703 5468 5369 183 196 78 0 chr12 129404014 129404065 -14878424 + L2 LINE L2 3134 3188 -84 258 321 107 0 chr12 129404435 129404547 -14877942 + L2 LINE L2 3188 3311 -2 538 283 80 63 chr12 129405254 129405512 -14876977 + L2 LINE L2 2917 3183 -89 2337 75 0 13 chr12 129405512 129405817 -14876672 - AluSx SINE Alu -11 301 1 538 283 80 63 chr12 129405817 129405908 -14876581 + L2 LINE L2 3183 3271 -1 286 244 197 69 chr12 129406399 129406673 -14875816 + LTR16A1 LTR ERVL 81 389 -68 247 301 84 0 chr12 129406781 129406864 -14875625 + L2 LINE L2 3182 3271 -1 237 289 54 36 chr12 129406984 129407150 -14875339 + L2 LINE L2 3014 3182 -131 2215 93 0 28 chr12 129407169 129407491 -14874998 + AluSp SINE Alu 1 313 0 755 174 0 0 chr12 129407491 129407606 -14874883 - AluJo/FLAM SINE Alu -187 115 1 2139 116 0 10 chr12 129407663 129407966 -14874523 - AluSx SINE Alu -12 300 1 994 118 0 0 chr12 129407966 129408101 -14874388 - AluSq/x SINE Alu -178 135 1 541 230 93 29 chr12 129408101 129408240 -14874249 + L2 LINE L2 3165 3312 -1 313 376 8 0 chr12 129408501 129408618 -14873871 + L2 LINE L2 3137 3254 -18 1750 132 4 22 chr12 129408620 129408893 -14873596 - AluJb SINE Alu -43 269 2 615 283 98 29 chr12 129409337 129409581 -14872908 + Charlie8 DNA MER1_type 26 286 -2131 359 243 19 39 chr12 129409582 129409685 -14872804 + L2 LINE L2 3213 3313 0 2489 68 0 0 chr12 129410264 129410575 -14871914 - AluY SINE Alu 0 311 1 28 0 0 0 chr12 129410576 129410604 -14871885 + AT_rich Low_complexity Low_complexity 1 28 0 1607 164 41 0 chr12 129410604 129410872 -14871617 - AluJo SINE Alu -31 281 3 451 284 52 0 chr12 129411016 129411150 -14871339 + MIR SINE MIR 46 186 -76 374 301 75 7 chr12 129412051 129412197 -14870292 - MIR SINE MIR 0 262 107 715 274 137 0 chr12 129412236 129412542 -14869947 + L2 LINE L2 2812 3159 -154 1702 161 37 10 chr12 129412544 129412842 -14869647 - AluJo SINE Alu -6 306 1 2175 95 3 0 chr12 129412991 129413286 -14869203 - AluSp SINE Alu -5 308 13 594 212 26 203 chr12 129413366 129413479 -14869010 + L1MC4 LINE L1 7602 7733 -309 828 149 8 15 chr12 129413479 129413613 -14868876 + FLAM_C SINE Alu 1 133 0 594 212 26 203 chr12 129413613 129413691 -14868798 + L1MC4 LINE L1 7733 7823 -219 2449 58 7 0 chr12 129413691 129413999 -14868490 + AluY SINE Alu 1 310 -1 594 212 26 203 chr12 129413999 129414338 -14868151 + L1MC4 LINE L1 7823 8039 -3 342 327 119 0 chr12 129414610 129414778 -14867711 + L2 LINE L2 2989 3176 -96 489 283 162 54 chr12 129414857 129415172 -14867317 + L2 LINE L2 2924 3272 0 255 256 26 13 chr12 129415172 129415250 -14867239 + (TGGA)n Simple_repeat Simple_repeat 2 80 0 474 290 6 51 chr12 129415705 129415881 -14866608 - MIR SINE MIR -4 258 91 2192 100 0 16 chr12 129416062 129416372 -14866117 - AluSx SINE Alu -5 307 3 474 234 29 29 chr12 129416603 129416740 -14865749 - MIR SINE MIR -77 185 49 240 363 12 6 chr12 129416836 129417004 -14865485 + (CA)n Simple_repeat Simple_repeat 1 169 0 366 269 97 15 chr12 129417821 129417955 -14864534 - MIR SINE MIR -58 204 60 2138 105 3 0 chr12 129418558 129418852 -14863637 - AluSx SINE Alu -17 295 1 710 250 22 85 chr12 129419211 129419392 -14863097 + MIR SINE MIR 8 168 -94 837 171 0 0 chr12 129419392 129419521 -14862968 - FLAM_A SINE Alu -4 129 1 710 250 22 85 chr12 129419521 129419611 -14862878 + MIR SINE MIR 168 262 0 231 36 0 0 chr12 129419785 129419813 -14862676 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 30 0 0 0 chr12 129420286 129420316 -14862173 + GC_rich Low_complexity Low_complexity 1 30 0 734 275 12 53 chr12 129423455 129423477 -14859012 + MIR SINE MIR 3 24 -238 2252 103 0 0 chr12 129423477 129423778 -14858711 - AluSx SINE Alu -11 301 1 734 275 12 53 chr12 129423778 129423999 -14858490 + MIR SINE MIR 24 236 -26 376 297 14 34 chr12 129424345 129424493 -14857996 + MIR SINE MIR 65 209 -53 259 227 20 67 chr12 129426854 129427004 -14855485 + C-rich Low_complexity Low_complexity 6 148 0 29 70 0 0 chr12 129427477 129427534 -14854955 + GC_rich Low_complexity Low_complexity 1 57 0 187 111 22 22 chr12 129427552 129427597 -14854892 + (CCGGG)n Simple_repeat Simple_repeat 4 48 0 257 89 22 0 chr12 129427670 129427715 -14854774 + (CGG)n Simple_repeat Simple_repeat 2 47 0 33 80 0 36 chr12 129427793 129427930 -14854559 + GC_rich Low_complexity Low_complexity 1 132 0 29 60 0 0 chr12 129428003 129428053 -14854436 + GC_rich Low_complexity Low_complexity 1 50 0 315 303 173 19 chr12 129430785 129430947 -14851542 - L2 LINE L2 -13 3300 3114 1957 132 0 3 chr12 129431064 129431352 -14851137 - AluSx SINE Alu -25 287 1 2298 89 3 0 chr12 129431782 129432085 -14850404 + AluSg SINE Alu 1 304 -6 189 74 0 0 chr12 129432226 129432253 -14850236 + (TA)n Simple_repeat Simple_repeat 2 28 0 1720 170 3 26 chr12 129432254 129432565 -14849924 - AluJo SINE Alu -8 304 1 3286 131 47 64 chr12 129432586 129432939 -14849550 - L1MC1 LINE L1 -48 6285 5927 2330 78 0 0 chr12 129432939 129433233 -14849256 + AluY SINE Alu 1 294 -17 3286 131 47 64 chr12 129433233 129433338 -14849151 - L1MC1 LINE L1 -406 5927 5822 1895 119 3 60 chr12 129433338 129433698 -14848791 - AluJb SINE Alu 0 312 1 3286 131 47 64 chr12 129433698 129433881 -14848608 - L1MC1 LINE L1 -511 5822 5654 1930 134 0 0 chr12 129434187 129434464 -14848025 + AluSx SINE Alu 2 278 -34 533 290 102 17 chr12 129434475 129434651 -14847838 - MIR SINE MIR -44 218 28 1863 155 0 0 chr12 129434860 129435167 -14847322 - AluJb SINE Alu 0 307 1 274 259 59 24 chr12 129435195 129435280 -14847209 - L2 LINE L2 -47 3225 3138 675 134 0 0 chr12 129435300 129435397 -14847092 - AluJ/FLAM SINE Alu -215 97 1 414 306 0 8 chr12 129435416 129435540 -14846949 - MIR SINE MIR -68 194 72 238 263 0 0 chr12 129436215 129436272 -14846217 + MIR SINE MIR 87 143 -65 234 269 13 26 chr12 129436387 129436465 -14846024 + MER117 DNA MER1_type 121 197 0 687 188 43 3 chr12 129436858 129437017 -14845472 + L1ME LINE L1 5657 5820 -313 1919 103 14 38 chr12 129437025 129437315 -14845174 + AluSx SINE Alu 30 312 0 1948 129 7 20 chr12 129437331 129437633 -14844856 + AluSx SINE Alu 11 308 -4 365 140 0 0 chr12 129437664 129437721 -14844768 - Alu SINE Alu 0 301 245 25 0 0 0 chr12 129437729 129437754 -14844735 + AT_rich Low_complexity Low_complexity 1 25 0 1049 137 98 95 chr12 129437788 129437988 -14844501 + MER33 DNA MER1_type 18 216 -2369 2155 116 0 0 chr12 129437988 129438320 -14844169 - AluSx SINE Alu 0 312 1 1049 137 98 95 chr12 129438320 129438389 -14844100 + MER33 DNA MER1_type 216 291 -2294 2302 64 0 0 chr12 129438389 129438671 -14843818 - AluY SINE Alu -14 297 16 1049 137 98 95 chr12 129438671 129438706 -14843783 + MER33 DNA MER1_type 291 324 0 674 204 28 57 chr12 129438706 129438887 -14843602 - L1ME3 LINE L1 -110 6052 5875 1877 143 0 7 chr12 129438887 129439196 -14843293 - AluJb SINE Alu 0 307 1 674 204 28 57 chr12 129439196 129439224 -14843265 - L1ME3 LINE L1 -287 5875 5848 1780 164 7 3 chr12 129439224 129439522 -14842967 + AluJo SINE Alu 1 299 -13 2321 76 16 0 chr12 129439636 129439939 -14842550 + AluY SINE Alu 1 308 -3 708 254 68 20 chr12 129440136 129440384 -14842105 - MIR SINE MIR -1 261 2 309 267 50 40 chr12 129440641 129440742 -14841747 - MIR3 SINE MIR -30 178 77 21 0 0 0 chr12 129441187 129441208 -14841281 + AT_rich Low_complexity Low_complexity 1 21 0 1884 117 39 26 chr12 129441215 129441523 -14840966 + AluSx SINE Alu 1 312 0 933 183 17 71 chr12 129441575 129441815 -14840674 + AluJo SINE Alu 22 248 -64 414 0 0 0 chr12 129441954 129442000 -14840489 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 233 259 0 0 chr12 129442025 129442079 -14840410 + L2 LINE L2 3219 3272 0 2207 95 0 3 chr12 129442134 129442429 -14840060 + AluSg SINE Alu 1 294 -16 1169 134 0 0 chr12 129442429 129442600 -14839889 + AluSq SINE Alu 134 304 -9 1698 164 4 0 chr12 129442612 129442893 -14839596 + AluJo SINE Alu 14 295 -17 1989 131 3 0 chr12 129442931 129443222 -14839267 - AluSq SINE Alu -21 292 1 975 189 0 16 chr12 129443529 129443705 -14838784 - AluJo SINE Alu -6 306 132 1700 177 0 19 chr12 129443705 129443878 -14838611 - AluSx SINE Alu -8 304 138 2220 106 0 0 chr12 129443878 129444181 -14838308 - AluSx SINE Alu -9 303 1 1700 177 0 19 chr12 129444181 129444317 -14838172 - AluSx SINE Alu -174 138 1 975 189 0 16 chr12 129444317 129444330 -14838159 - AluJo SINE Alu -180 132 120 313 245 52 39 chr12 129444330 129444485 -14838004 + Charlie7 DNA MER1_type 2455 2611 -1 582 185 44 42 chr12 129444526 129444720 -14837769 + L1MB5 LINE L1 4928 5166 -980 1838 138 10 3 chr12 129444720 129445036 -14837453 + AluJo SINE Alu 1 312 0 582 185 44 42 chr12 129445036 129445069 -14837420 + L1MB5 LINE L1 5166 5197 -949 2116 121 7 3 chr12 129445069 129445376 -14837113 + AluSx SINE Alu 1 308 -4 1819 114 10 62 chr12 129445377 129445685 -14836804 + AluJb SINE Alu 1 292 -20 3309 169 68 80 chr12 129445700 129446280 -14836209 + L1MB5 LINE L1 5320 5888 -286 1829 147 3 7 chr12 129446280 129446573 -14835916 + AluJb SINE Alu 21 312 0 3309 169 68 80 chr12 129446573 129446826 -14835663 + L1MB5 LINE L1 5888 6143 -31 359 317 45 85 chr12 129446915 129447139 -14835350 - L1MC4a LINE L1 -1758 6050 5836 346 235 24 0 chr12 129447442 129447527 -14834962 + MIR SINE MIR 73 159 -103 222 157 39 0 chr12 129447956 129448007 -14834482 + G-rich Low_complexity Low_complexity 2 54 0 188 182 23 0 chr12 129448036 129448080 -14834409 + G-rich Low_complexity Low_complexity 6 50 0 947 161 0 11 chr12 129448148 129448506 -14833983 + GA-rich Low_complexity Low_complexity 1 353 0 1850 99 0 0 chr12 129448506 129448749 -14833740 + AluSq SINE Alu 1 243 -70 2174 107 0 22 chr12 129448762 129449079 -14833410 - AluSx SINE Alu -2 310 1 189 0 0 0 chr12 129449092 129449113 -14833376 + (A)n Simple_repeat Simple_repeat 1 21 0 438 171 9 18 chr12 129449119 129449230 -14833259 + GA-rich Low_complexity Low_complexity 4 113 0 612 206 0 23 chr12 129449244 129449419 -14833070 + GA-rich Low_complexity Low_complexity 4 174 0 469 277 92 4 chr12 129449419 129449674 -14832815 + L2 LINE L2 2780 3059 -254 308 270 56 0 chr12 129449907 129449996 -14832493 + MIR SINE MIR 49 142 -66 1416 133 93 75 chr12 129449998 129450162 -14832327 - AluSx SINE Alu 0 310 150 2135 108 0 33 chr12 129450162 129450468 -14832021 - AluSp SINE Alu -17 296 1 2350 90 0 0 chr12 129450468 129450758 -14831731 - AluSc SINE Alu -19 290 1 1416 133 93 75 chr12 129450758 129450897 -14831592 - AluSx SINE Alu -159 151 1 24 32 0 0 chr12 129450897 129450928 -14831561 + AT_rich Low_complexity Low_complexity 1 31 0 266 143 0 0 chr12 129450928 129450970 -14831519 - AluJb SINE Alu -177 125 84 991 165 0 123 chr12 129450970 129451176 -14831313 - AluJo SINE Alu -94 218 44 2210 100 4 0 chr12 129451176 129451484 -14831005 + AluSx SINE Alu 1 309 0 991 165 0 123 chr12 129451484 129451519 -14830970 - AluJo SINE Alu -268 44 6 2378 80 3 7 chr12 129451552 129451851 -14830638 + AluY SINE Alu 1 298 -13 641 230 52 39 chr12 129451990 129452218 -14830271 - MIR SINE MIR -12 250 15 979 205 0 0 chr12 129452407 129452578 -14829911 - AluJb SINE Alu -8 304 134 2094 130 27 0 chr12 129452578 129452878 -14829611 - AluSx SINE Alu -4 308 1 660 188 16 16 chr12 129453656 129453784 -14828705 + MIR SINE MIR 65 192 -70 601 99 0 0 chr12 129453888 129453969 -14828520 - FLAM_A SINE Alu -10 132 52 210 91 0 0 chr12 129454017 129454050 -14828439 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2074 134 10 0 chr12 129454064 129454363 -14828126 - AluSg SINE Alu -8 302 1 383 286 0 34 chr12 129454363 129454482 -14828007 - MIR SINE MIR -72 190 76 1291 211 55 97 chr12 129454683 129454866 -14827623 + L1ME3 LINE L1 5687 5876 -286 2162 119 6 19 chr12 129454866 129455178 -14827311 - AluSx SINE Alu 0 312 5 1291 211 55 97 chr12 129455178 129455366 -14827123 + L1ME3 LINE L1 5876 6034 -128 2341 104 0 0 chr12 129455366 129455665 -14826824 - AluSx SINE Alu -13 299 1 1291 211 55 97 chr12 129455665 129455785 -14826704 + L1ME3 LINE L1 6034 6158 -4 858 147 0 7 chr12 129455808 129455944 -14826545 - FLAM_C SINE Alu -8 135 1 267 211 28 0 chr12 129455956 129456027 -14826462 - MER113 DNA MER1_type? -405 116 44 1031 123 31 67 chr12 129456135 129456330 -14826159 - MER53 DNA DNA -1 188 1 667 277 79 10 chr12 129457121 129457323 -14825166 - MIR SINE MIR 0 262 47 2314 118 0 0 chr12 129457562 129457868 -14824621 + AluSx SINE Alu 1 306 -6 1396 203 19 12 chr12 129458032 129458353 -14824136 - L1ME1 LINE L1 -5 6161 5839 245 311 212 23 chr12 129458390 129458522 -14823967 + MIR SINE MIR 105 261 -1 * 344 219 0 27 chr12 129458511 129458584 -14823905 + L2 LINE L2 3172 3242 -71 471 261 9 9 chr12 129458612 129458727 -14823762 - MIR SINE MIR -124 138 24 1988 138 3 10 chr12 129458727 129459018 -14823471 - AluJb SINE Alu -18 294 6 1797 146 76 0 chr12 129459030 129459318 -14823171 - AluSx SINE Alu -2 310 1 396 211 56 87 chr12 129459492 129459653 -14822836 - MIR SINE MIR -1 261 106 2455 61 0 0 chr12 129459701 129459995 -14822494 + AluY SINE Alu 1 294 -17 1133 183 28 36 chr12 129459998 129460156 -14822333 - L1MA4 LINE L1 -15 6285 6128 2371 90 0 13 chr12 129460156 129460467 -14822022 - AluSx SINE Alu -5 307 1 1133 183 28 36 chr12 129460467 129460559 -14821930 - L1MA4 LINE L1 -172 6128 6037 288 247 10 52 chr12 129461185 129461282 -14821207 - MIR SINE MIR -148 114 22 386 259 111 52 chr12 129461482 129461498 -14820991 - MIR SINE MIR -15 247 233 1822 143 37 4 chr12 129461498 129461770 -14820719 - AluJb SINE Alu -31 281 1 386 259 111 52 chr12 129461770 129461868 -14820621 - MIR SINE MIR -29 233 142 2451 88 0 0 chr12 129461868 129462165 -14820324 - AluSq SINE Alu -16 297 1 386 259 111 52 chr12 129462165 129462273 -14820216 - MIR SINE MIR -120 142 7 347 252 151 42 chr12 129462538 129462657 -14819832 + MIR SINE MIR 21 152 -110 842 132 15 15 chr12 129462665 129462801 -14819688 + AluSq/x SINE Alu 1 136 -177 855 252 165 27 chr12 129462870 129463239 -14819250 + MLT1K LTR MaLR 45 464 -124 273 57 0 0 chr12 129463381 129463416 -14819073 + (TA)n Simple_repeat Simple_repeat 2 36 0 1962 124 11 0 chr12 129463416 129463689 -14818800 - AluSx SINE Alu -15 297 22 2218 124 0 0 chr12 129463712 129464011 -14818478 + AluSg SINE Alu 1 299 -11 720 120 83 0 chr12 129464021 129464149 -14818340 - FLAM_C SINE Alu 0 137 1 818 143 0 50 chr12 129464181 129464321 -14818168 + FLAM_C SINE Alu 11 143 0 375 219 29 48 chr12 129464340 129464445 -14818044 + L1MC4 LINE L1 6601 6703 -1339 376 255 10 41 chr12 129464447 129464545 -14817944 + L1MC4 LINE L1 6614 6708 -1334 201 217 0 22 chr12 129464546 129464592 -14817897 + (TA)n Simple_repeat Simple_repeat 2 46 0 531 230 31 68 chr12 129465205 129465331 -14817158 + MIR SINE MIR 20 149 -113 896 129 0 50 chr12 129465331 129465471 -14817018 + FLAM_C SINE Alu 1 133 0 531 230 31 68 chr12 129465471 129465485 -14817004 + MIR SINE MIR 149 156 -106 1622 134 24 102 chr12 129465485 129465820 -14816669 + AluYb8 SINE Alu 1 309 -9 531 230 31 68 chr12 129465820 129465839 -14816650 + MIR SINE MIR 156 174 -88 480 246 75 91 chr12 129465926 129465999 -14816490 - MIR SINE MIR 0 262 189 898 126 0 15 chr12 129465999 129466134 -14816355 + FLAM_C SINE Alu 1 133 0 480 246 75 91 chr12 129466134 129466312 -14816177 - MIR SINE MIR -73 189 15 2210 103 7 3 chr12 129466465 129466757 -14815732 - AluSg SINE Alu -16 294 2 998 202 0 0 chr12 129466768 129466936 -14815553 - FRAM SINE Alu -8 168 1 2163 125 0 0 chr12 129466949 129467238 -14815251 - AluSx SINE Alu -15 297 9 2554 76 0 13 chr12 129467644 129467959 -14814530 + AluSx SINE Alu 1 311 -1 596 268 42 26 chr12 129467984 129468174 -14814315 + MIR SINE MIR 2 194 -68 2449 88 0 7 chr12 129468184 129468489 -14814000 + AluSc SINE Alu 2 304 -5 2079 146 0 0 chr12 129468492 129468779 -14813710 + AluSg SINE Alu 3 289 -21 440 174 128 37 chr12 129468780 129468889 -14813600 + L1ME4a LINE L1 5926 6044 -77 1668 99 0 0 chr12 129468933 129469146 -14813343 - AluSc SINE Alu -5 304 92 23 33 0 0 chr12 129469184 129469214 -14813275 + AT_rich Low_complexity Low_complexity 1 30 0 2210 134 0 0 chr12 129469225 129469531 -14812958 - AluSx SINE Alu -6 306 1 21 0 0 0 chr12 129469736 129469757 -14812732 + AT_rich Low_complexity Low_complexity 1 21 0 911 130 15 0 chr12 129469764 129469895 -14812594 + FRAM SINE Alu 33 165 -11 2260 112 7 0 chr12 129469991 129470287 -14812202 - AluSx SINE Alu -14 298 1 2524 87 0 0 chr12 129470307 129470617 -14811872 - AluSg SINE Alu 0 310 1 253 365 43 5 chr12 129470626 129470834 -14811655 - L1ME LINE L1 -303 5818 5603 1835 178 24 0 chr12 129470879 129471211 -14811278 - MER2 DNA MER2_type -5 340 1 1887 138 50 10 chr12 129471265 129471563 -14810926 + AluSg SINE Alu 1 310 0 316 252 38 124 chr12 129471868 129471972 -14810517 - L1ME4a LINE L1 -5 6116 6037 2081 102 34 3 chr12 129471972 129472266 -14810223 + AluSx SINE Alu 1 303 -9 316 252 38 124 chr12 129472266 129472371 -14810118 - L1ME4a LINE L1 -84 6037 5925 290 169 0 48 chr12 129472866 129472990 -14809499 + (TG)n Simple_repeat Simple_repeat 1 118 0 201 163 0 61 chr12 129472990 129473039 -14809450 + GA-rich Low_complexity Low_complexity 4 49 0 550 243 243 0 chr12 129473070 129473247 -14809242 - MIR SINE MIR 0 262 43 2265 118 0 0 chr12 129473273 129473570 -14808919 + AluSx SINE Alu 1 297 -15 305 172 204 0 chr12 129473592 129473685 -14808804 + L1ME1 LINE L1 6049 6160 -6 2189 138 0 3 chr12 129473700 129474012 -14808477 - AluSx SINE Alu -1 311 1 1771 180 3 19 chr12 129474044 129474360 -14808129 + AluJo SINE Alu 1 311 -1 225 286 33 33 chr12 129474450 129474541 -14807948 + L2 LINE L2 3182 3272 0 214 170 113 19 chr12 129474544 129474597 -14807892 + MIR SINE MIR 93 150 -58 205 193 24 121 chr12 129474626 129474709 -14807780 + L2 LINE L2 3015 3089 -183 217 289 217 0 chr12 129474882 129474965 -14807524 + L2 LINE L2 3172 3272 0 2239 115 0 0 chr12 129475009 129475305 -14807184 + AluSq SINE Alu 1 296 -17 291 253 167 75 chr12 129475501 129475689 -14806800 + MIR SINE MIR 31 214 -13 2099 110 0 0 chr12 129475706 129475979 -14806510 - AluSx SINE Alu -18 294 22 873 133 0 8 chr12 129475982 129476110 -14806379 - AluJo/FLAM SINE Alu -181 131 5 1905 182 3 3 chr12 129476162 129476469 -14806020 - AluJb SINE Alu -1 311 5 700 277 85 0 chr12 129476536 129476724 -14805765 - MIR SINE MIR -8 254 51 951 198 12 0 chr12 129476731 129476903 -14805586 - MER5A DNA MER1_type -12 177 4 829 163 0 15 chr12 129477266 129477401 -14805088 + FLAM_C SINE Alu 1 133 0 2205 121 0 0 chr12 129477592 129477881 -14804608 - AluSx SINE Alu -23 289 1 411 164 0 0 chr12 129478003 129478070 -14804419 + L1MC1 LINE L1 6063 6129 -204 694 172 16 0 chr12 129478070 129478192 -14804297 + FLAM_C SINE Alu 2 125 -8 1182 174 31 0 chr12 129478196 129478391 -14804098 + AluSc SINE Alu 1 201 -108 1087 121 0 0 chr12 129478402 129478551 -14803938 + AluSq SINE Alu 151 299 -14 1307 119 0 0 chr12 129478551 129478727 -14803762 + AluSp SINE Alu 121 296 -17 811 148 7 28 chr12 129478729 129478871 -14803618 + L1MC1 LINE L1 6186 6324 -9 2559 59 0 13 chr12 129478905 129479212 -14803277 + AluY SINE Alu 1 303 -8 1992 135 4 4 chr12 129479212 129479492 -14802997 - AluJo SINE Alu -31 281 1 2255 103 3 0 chr12 129479518 129479809 -14802680 + AluSx SINE Alu 1 292 -20 2284 98 3 3 chr12 129479812 129480108 -14802381 + AluSx SINE Alu 3 298 -14 180 0 0 0 chr12 129480108 129480128 -14802361 + (GA)n Simple_repeat Simple_repeat 2 21 0 359 246 78 22 chr12 129480220 129480385 -14802104 - MIR SINE MIR -50 212 40 2171 104 10 0 chr12 129480603 129480891 -14801598 + AluSq SINE Alu 1 291 -22 2468 76 0 10 chr12 129480891 129481194 -14801295 + AluY SINE Alu 8 307 -4 649 275 61 35 chr12 129481521 129481750 -14800739 - MIR SINE MIR 0 262 28 738 109 58 6 chr12 129481801 129481957 -14800532 + CT-rich Low_complexity Low_complexity 3 166 0 186 43 0 0 chr12 129481960 129481983 -14800506 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2083 99 55 3 chr12 129481988 129482281 -14800208 - AluSx SINE Alu -4 308 1 2328 122 0 0 chr12 129482324 129482636 -14799853 - AluSx SINE Alu 0 312 1 272 265 122 0 chr12 129482694 129482792 -14799697 - L2 LINE L2 -4 3268 3159 1896 147 0 49 chr12 129482809 129483116 -14799373 - AluJo SINE Alu -20 292 1 423 325 24 0 chr12 129483169 129483292 -14799197 + MER5A DNA MER1_type 64 189 0 2089 113 33 20 chr12 129483346 129483648 -14798841 - AluSx SINE Alu -6 306 1 974 116 0 0 chr12 129483721 129483850 -14798639 - FLAM_C SINE Alu 0 133 5 405 318 11 48 chr12 129484486 129484675 -14797814 + MIR SINE MIR 13 194 -68 328 349 26 20 chr12 129484723 129484875 -14797614 - L1MC4 LINE L1 -1334 6708 6556 316 250 180 0 chr12 129484850 129484978 -14797511 + L1MCa LINE L1 1918 2068 -4358 * 183 100 0 0 chr12 129484991 129485021 -14797468 + (TG)n Simple_repeat Simple_repeat 2 31 0 1653 133 18 59 chr12 129485021 129485173 -14797316 - AluJo SINE Alu -28 284 127 245 27 54 0 chr12 129485173 129485210 -14797279 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2220 100 0 0 chr12 129485210 129485490 -14796999 - AluY SINE Alu -30 281 2 2407 94 0 22 chr12 129485495 129485813 -14796676 - AluSx SINE Alu -1 311 1 1653 133 18 59 chr12 129485813 129485939 -14796550 - AluJo SINE Alu -188 124 11 575 263 0 0 chr12 129485953 129486109 -14796380 - L1PB4 LINE L1 -1 6155 6000 1277 153 45 18 chr12 129486144 129486366 -14796123 - AluJb SINE Alu -84 228 1 183 377 0 0 chr12 129486369 129486430 -14796059 + MIR SINE MIR 201 261 -1 271 264 11 66 chr12 129486442 129486533 -14795956 - L2 LINE L2 -36 3277 3192 2299 77 7 17 chr12 129486533 129486832 -14795657 - AluY SINE Alu -14 297 2 446 149 0 0 chr12 129486861 129486935 -14795554 + AluS SINE Alu 232 305 -7 2286 95 3 0 chr12 129486951 129487255 -14795234 - AluSp SINE Alu 0 305 1 1785 141 32 14 chr12 129487262 129487545 -14794944 - AluJo SINE Alu -24 288 1 195 129 0 0 chr12 129487767 129487798 -14794691 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 1183 141 0 0 chr12 129487830 129487993 -14794496 + AluSg/x SINE Alu 136 298 -14 402 261 11 0 chr12 129487994 129488082 -14794407 - L2 LINE L2 -25 3288 3200 440 247 106 40 chr12 129488095 129488370 -14794119 - L2 LINE L2 -273 2999 2693 1015 126 0 0 chr12 129488374 129488509 -14793980 + AluJb SINE Alu 1 135 -177 1502 91 0 0 chr12 129488509 129488695 -14793794 + AluSq SINE Alu 1 186 -127 1772 69 0 9 chr12 129488700 129488918 -14793571 - AluSx SINE Alu -96 216 1 404 40 53 66 chr12 129488950 129489026 -14793463 + AluY SINE Alu 238 312 0 238 191 0 0 chr12 129489288 129489330 -14793159 - L2 LINE L2 -85 3228 3187 2191 78 17 7 chr12 129489374 129489668 -14792821 - AluY SINE Alu -14 297 1 980 131 0 15 chr12 129489668 129489805 -14792684 - AluSq/x SINE Alu -177 135 1 881 158 0 0 chr12 129489841 129489974 -14792515 - FLAM_C SINE Alu 0 133 1 309 159 79 0 chr12 129490009 129490072 -14792417 - L1ME4a LINE L1 -1 6120 6053 505 271 144 6 chr12 129490298 129490479 -14792010 - MIR SINE MIR 0 262 57 2449 75 0 0 chr12 129490506 129490801 -14791688 + AluSg SINE Alu 1 295 -15 1878 168 4 0 chr12 129490801 129491080 -14791409 - AluJb SINE Alu -31 281 1 2502 84 0 0 chr12 129491199 129491497 -14790992 + AluSx SINE Alu 1 298 -14 470 294 54 39 chr12 129491905 129492109 -14790380 - MIR SINE MIR -50 212 6 1077 100 93 0 chr12 129492218 129492368 -14790121 - AluSg/x SINE Alu -15 295 132 2238 93 3 33 chr12 129492368 129492669 -14789820 - AluSq SINE Alu -21 292 1 2246 113 10 0 chr12 129492669 129492971 -14789518 - AluSx SINE Alu -7 305 1 2540 77 0 0 chr12 129493261 129493559 -14788930 - AluSq SINE Alu -13 300 3 298 196 0 0 chr12 129493577 129493628 -14788861 - MIR SINE MIR -2 260 210 298 209 45 30 chr12 129493632 129493699 -14788790 + MIR SINE MIR 2 69 -193 1116 189 17 0 chr12 129493699 129493879 -14788610 + AluJo SINE Alu 1 183 -129 2286 101 0 3 chr12 129493884 129494172 -14788317 + AluSx SINE Alu 6 292 -20 188 217 200 0 chr12 129494239 129494299 -14788190 - MIR SINE MIR -129 79 14 779 145 0 0 chr12 129494299 129494416 -14788073 - FLAM_A SINE Alu -6 136 20 241 261 98 11 chr12 129494631 129494723 -14787766 - MIR SINE MIR -140 122 23 2092 122 7 3 chr12 129494740 129495044 -14787445 - AluSx SINE Alu -7 305 1 2197 126 3 3 chr12 129495044 129495345 -14787144 - AluSq SINE Alu -12 301 1 702 202 32 0 chr12 129495493 129495617 -14786872 - FLAM_C SINE Alu -9 134 7 234 0 0 0 chr12 129495650 129495676 -14786813 + (A)n Simple_repeat Simple_repeat 1 26 0 2244 108 6 16 chr12 129495676 129495992 -14786497 + AluSq SINE Alu 1 313 0 212 278 0 19 chr12 129496004 129496058 -14786431 - MIR SINE MIR -140 68 16 204 40 0 0 chr12 129496068 129496093 -14786396 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 330 241 165 98 chr12 129496094 129496330 -14786159 - L2 LINE L2 -14 3299 3048 240 35 0 0 chr12 129497353 129497382 -14785107 + (T)n Simple_repeat Simple_repeat 1 29 0 906 138 0 7 chr12 129497489 129497634 -14784855 + AluSg/x SINE Alu 165 308 -2 2163 98 0 17 chr12 129497812 129498109 -14784380 + AluSq SINE Alu 1 292 -21 289 77 0 0 chr12 129498114 129498153 -14784336 - U2 snRNA snRNA -149 39 1 216 0 0 0 chr12 129498161 129498185 -14784304 + (TTA)n Simple_repeat Simple_repeat 1 24 0 862 189 34 99 chr12 129498301 129498534 -14783955 - MER20 DNA MER1_type -1 218 1 197 226 28 160 chr12 129498613 129498719 -14783770 - MER5A DNA MER1_type -95 94 3 1910 103 85 4 chr12 129499566 129499837 -14782652 + AluSx SINE Alu 1 293 -19 2515 76 0 0 chr12 129500032 129500334 -14782155 - AluY SINE Alu -9 302 1 244 0 0 0 chr12 129500520 129500547 -14781942 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2435 75 3 7 chr12 129500547 129500852 -14781637 - AluYa5 SINE Alu -7 304 1 208 0 0 0 chr12 129500860 129500883 -14781606 + (TTTTA)n Simple_repeat Simple_repeat 2 150 0 2136 98 0 3 chr12 129500883 129501169 -14781320 - AluSp SINE Alu -1 307 1 1713 178 24 0 chr12 129501642 129501934 -14780555 - AluJb SINE Alu -13 299 1 1707 110 110 0 chr12 129502104 129502367 -14780122 + AluSg SINE Alu 1 292 -18 1974 138 0 0 chr12 129503676 129503973 -14778516 + AluSx SINE Alu 1 297 -15 219 291 37 3 chr12 129504094 129504231 -14778258 + MIR SINE MIR 41 222 -40 183 304 18 0 chr12 129504459 129504515 -14777974 + MIR SINE MIR 86 142 -66 188 289 10 0 chr12 129505473 129505543 -14776946 - MIR SINE MIR -67 141 69 2231 71 7 10 chr12 129505632 129505942 -14776547 - AluSg1 SINE Alu 0 309 1 210 336 138 18 chr12 129505977 129506194 -14776295 + L2 LINE L2 2844 3086 -227 1563 193 10 3 chr12 129506321 129506621 -14775868 - AluSx SINE Alu -10 302 1 1150 176 137 0 chr12 129506658 129506885 -14775604 - AluJo SINE Alu -15 297 40 1980 141 0 0 chr12 129506899 129507190 -14775299 - AluSx SINE Alu -15 297 7 2239 86 0 0 chr12 129507210 129507500 -14774989 - AluSg SINE Alu -9 301 12 2116 90 17 7 chr12 129507525 129507825 -14774664 - AluY SINE Alu -8 303 1 1890 114 14 0 chr12 129508007 129508314 -14774175 - AluSx SINE Alu 0 311 1 2351 74 3 0 chr12 129508333 129508629 -14773860 - AluSp SINE Alu -16 297 1 2228 96 0 7 chr12 129509427 129509728 -14772761 + AluSx SINE Alu 1 299 -13 1972 119 3 0 chr12 129509732 129510027 -14772462 + AluSg SINE Alu 1 296 -14 2090 110 0 0 chr12 129510027 129510332 -14772157 + AluSx SINE Alu 1 305 0 429 297 89 20 chr12 129510407 129510440 -14772049 - MIR SINE MIR -24 238 209 2214 99 3 0 chr12 129510440 129510744 -14771745 - AluSx SINE Alu -7 305 1 429 297 89 20 chr12 129510744 129510912 -14771577 - MIR SINE MIR -53 209 23 1306 150 0 52 chr12 129511036 129511269 -14771220 - AluJo SINE Alu -91 221 1 1626 164 0 4 chr12 129511289 129511563 -14770926 - AluJb SINE Alu -39 273 1 839 232 36 5 chr12 129511897 129512091 -14770398 - MER105 DNA DNA -2 202 3 843 175 0 0 chr12 129512268 129512394 -14770095 + FLAM_A SINE Alu 1 126 -7 234 0 0 0 chr12 129512398 129512424 -14770065 + (CAA)n Simple_repeat Simple_repeat 2 27 0 348 239 94 17 chr12 129512752 129512869 -14769620 - Charlie8 DNA MER1_type -2152 265 140 300 258 375 0 chr12 129512873 129513001 -14769488 - MIR SINE MIR -71 191 16 1887 78 43 25 chr12 129513001 129513282 -14769207 - AluY SINE Alu -25 286 1 1796 148 18 0 chr12 129513472 129513750 -14768739 - AluSx SINE Alu -29 283 1 1874 122 31 0 chr12 129513750 129514036 -14768453 - AluSx SINE Alu -17 295 1 2465 34 0 3 chr12 129514257 129514553 -14767936 - AluY SINE Alu -16 295 1 2001 75 4 4 chr12 129516170 129516437 -14766052 - AluSp SINE Alu -9 304 38 525 241 132 100 chr12 129516567 129516666 -14765823 - Charlie8 DNA MER1_type -109 232 138 1909 96 57 7 chr12 129516666 129516948 -14765541 - AluSg1 SINE Alu -13 296 1 525 241 132 100 chr12 129516948 129517068 -14765421 - Charlie8 DNA MER1_type -203 138 6 2245 78 3 0 chr12 129517432 129517726 -14764763 - AluY SINE Alu -16 295 1 2311 65 7 3 chr12 129518142 129518450 -14764039 + AluY SINE Alu 1 309 -2 2278 72 21 0 chr12 129519291 129519581 -14762908 + AluY SINE Alu 1 296 -15 1459 160 31 21 chr12 129519670 129519957 -14762532 - AluJo SINE Alu -15 297 8 27 0 0 0 chr12 129520464 129520491 -14761998 + AT_rich Low_complexity Low_complexity 1 27 0 510 241 159 12 chr12 129520807 129520977 -14761512 - MIR SINE MIR 0 262 68 275 216 0 0 chr12 129521041 129521092 -14761397 - L3b LINE CR1 -7 1576 1526 286 397 82 9 chr12 129521137 129521369 -14761120 - MIR SINE MIR -6 256 8 722 192 16 0 chr12 129521854 129521979 -14760510 + FLAM_A SINE Alu 1 127 -6 27 0 0 0 chr12 129521985 129522012 -14760477 + AT_rich Low_complexity Low_complexity 1 27 0 187 277 169 0 chr12 129524110 129524175 -14758314 - MIR SINE MIR 0 262 187 671 156 244 0 chr12 129524797 129524932 -14757557 + AluJb SINE Alu 134 301 -11 367 149 60 0 chr12 129524986 129525053 -14757436 + FLAM SINE Alu 63 133 0 1724 158 10 0 chr12 129525110 129525402 -14757087 - AluJo SINE Alu -17 295 1 1736 144 34 7 chr12 129525794 129526092 -14756397 + AluSx SINE Alu 1 306 -6 400 253 151 7 chr12 129526095 129526241 -14756248 + MIR SINE MIR 46 212 -50 1927 134 3 0 chr12 129526380 129526678 -14755811 + AluSq SINE Alu 1 299 -14 708 174 7 54 chr12 129526720 129526869 -14755620 + FLAM_C SINE Alu 2 143 0 240 226 0 57 chr12 129527877 129527983 -14754506 + G-rich Low_complexity Low_complexity 3 102 0 216 247 11 21 chr12 129528136 129528229 -14754260 + (CCG)n Simple_repeat Simple_repeat 2 93 0 1145 159 129 8 chr12 129529037 129529301 -14753188 - AluJb SINE Alu -5 297 2 2135 99 7 0 chr12 129529330 129529623 -14752866 + AluSx SINE Alu 1 295 -17 1907 120 6 43 chr12 129529649 129529973 -14752516 + AluSx SINE Alu 1 312 0 255 294 127 61 chr12 129530064 129530177 -14752312 + L1ME4a LINE L1 5518 5622 -499 2281 80 0 3 chr12 129530177 129530478 -14752011 - AluY SINE Alu -11 300 1 255 294 127 61 chr12 129530478 129530609 -14751880 + L1ME4a LINE L1 5622 5778 -343 254 218 132 63 chr12 129530713 129530887 -14751602 + L1ME4a LINE L1 5935 6120 -1 438 242 83 23 chr12 129531717 129531849 -14750640 - L2 LINE L2 -192 3080 2941 890 160 0 26 chr12 129531868 129531980 -14750509 + AluJ SINE Alu 25 133 -179 2155 110 7 3 chr12 129531980 129532289 -14750200 + AluSx SINE Alu 2 311 -1 890 160 0 26 chr12 129532289 129532332 -14750157 + AluJ SINE Alu 133 176 -136 560 96 0 0 chr12 129532333 129532406 -14750083 - AluJ/FLAM SINE Alu -228 84 12 900 154 0 7 chr12 129532407 129532550 -14749939 + AluJ SINE Alu 154 295 -17 1330 147 0 0 chr12 129532668 129532872 -14749617 + AluJb SINE Alu 84 287 -25 724 53 0 80 chr12 129533039 129533152 -14749337 + L1PB1 LINE L1 6046 6149 -2 1058 194 15 5 chr12 129534099 129534305 -14748184 + MER3 DNA MER1_type 2 209 0 230 194 0 0 chr12 129534407 129534443 -14748046 + L2 LINE L2 3268 3303 -10 28 29 0 0 chr12 129534877 129534912 -14747577 + AT_rich Low_complexity Low_complexity 1 35 0 2293 77 3 3 chr12 129535178 129535477 -14747012 - AluSp SINE Alu -12 301 3 2217 113 3 0 chr12 129535485 129535796 -14746693 - AluSx SINE Alu 0 312 1 284 173 96 87 chr12 129535914 129536018 -14746471 - L2 LINE L2 -1 3312 3208 392 202 135 0 chr12 129536175 129536264 -14746225 - MER5A DNA MER1_type -80 109 9 1211 179 9 5 chr12 129536391 129536609 -14745880 + MER20 DNA MER1_type 1 219 0 2208 94 3 3 chr12 129536831 129537139 -14745350 + AluY SINE Alu 1 308 -3 263 235 61 61 chr12 129537139 129537237 -14745252 + MER117 DNA MER1_type 65 162 -35 198 273 73 0 chr12 129537243 129537298 -14745191 + L3 LINE CR1 1516 1574 -3 1961 137 3 10 chr12 129537323 129537637 -14744852 + AluSx SINE Alu 1 312 0 180 378 24 24 chr12 129537879 129537961 -14744528 + MIR SINE MIR 20 101 -107 216 0 0 0 chr12 129538192 129538216 -14744273 + (TG)n Simple_repeat Simple_repeat 2 25 0 840 107 13 53 chr12 129538231 129538381 -14744108 - L1MB3 LINE L1 0 6183 6040 1384 168 0 45 chr12 129538387 129538673 -14743816 - AluJo SINE Alu 0 312 40 220 302 57 66 chr12 129539296 129539402 -14743087 - L2 LINE L2 -3 3310 3206 1640 144 11 4 chr12 129539531 129539794 -14742695 + L1PB3 LINE L1 5890 6154 0 1591 158 31 17 chr12 129539823 129540114 -14742375 + AluJb SINE Alu 1 295 -17 2998 157 12 2 chr12 129540118 129540635 -14741854 + L1MC1 LINE L1 5812 6333 0 304 239 163 67 chr12 129541488 129541949 -14740540 + L1ME4a LINE L1 5615 6119 -2 2104 91 24 17 chr12 129543023 129543319 -14739170 + AluSx SINE Alu 1 298 -14 686 112 9 19 chr12 129544155 129544262 -14738227 + AluSc SINE Alu 2 107 -202 200 74 0 0 chr12 129595271 129595298 -14687191 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1661 236 14 53 chr12 129595515 129595774 -14686715 - LTR16C LTR ERVL 0 491 254 2363 91 0 0 chr12 129595774 129596082 -14686407 - AluSx SINE Alu -4 308 1 1661 236 14 53 chr12 129596082 129596259 -14686230 - LTR16C LTR ERVL -237 254 72 320 221 0 29 chr12 129596752 129596820 -14685669 + L2 LINE L2 3248 3313 0 1590 127 54 137 chr12 129596840 129597050 -14685439 - THE1C LTR MaLR 0 375 214 1923 130 0 3 chr12 129597050 129597335 -14685154 + AluSx SINE Alu 1 284 -28 1590 127 54 137 chr12 129597335 129597533 -14684956 - THE1C LTR MaLR -161 214 1 1370 212 10 3 chr12 129597600 129597893 -14684596 - AluJo SINE Alu -17 295 1 1464 144 0 42 chr12 129598344 129598406 -14684083 + AluJb SINE Alu 1 64 -248 1495 85 5 0 chr12 129598406 129598607 -14683882 - AluSp SINE Alu -18 295 94 1464 144 0 42 chr12 129598607 129598807 -14683682 + AluJb SINE Alu 64 252 -60 448 302 29 41 chr12 129598835 129599007 -14683482 - LTR16A LTR ERVL -78 372 203 2016 103 10 3 chr12 129599019 129599311 -14683178 + AluSx SINE Alu 1 294 -18 797 104 0 48 chr12 129599530 129599655 -14682834 - AluSx SINE Alu 0 310 192 1064 99 0 7 chr12 129599656 129599798 -14682691 - AluSx SINE Alu -171 141 1 181 324 54 0 chr12 129599807 129599881 -14682608 + L3b LINE CR1 1335 1412 -171 1910 161 0 0 chr12 129599886 129600191 -14682298 - AluJb SINE Alu -7 305 1 810 119 8 22 chr12 129600793 129600958 -14681531 - AluJb SINE Alu 0 315 153 1178 191 0 5 chr12 129601720 129601930 -14680559 + AluJb SINE Alu 84 292 -20 1104 151 159 44 chr12 129601961 129602213 -14680276 + AluJo SINE Alu 11 291 -21 2319 114 0 0 chr12 129602675 129602982 -14679507 + AluSx SINE Alu 3 309 -3 298 122 40 0 chr12 129602986 129603060 -14679429 + A-rich Low_complexity Low_complexity 2 78 0 355 256 26 60 chr12 129603070 129603187 -14679302 + MER58C DNA MER1_type 103 215 0 822 165 0 0 chr12 129603334 129603455 -14679034 + FLAM_C SINE Alu 3 123 -20 324 111 61 0 chr12 129603455 129603554 -14678935 + (TA)n Simple_repeat Simple_repeat 2 106 0 242 207 0 17 chr12 129603554 129603612 -14678877 + L1MC4 LINE L1 7610 7666 -376 3286 246 105 26 chr12 129603639 129604164 -14678325 + L1MEc LINE L1 36 518 -5697 1274 116 156 0 chr12 129604164 129604363 -14678126 + MER30 DNA MER1_type 1 230 0 3286 246 105 26 chr12 129604363 129604557 -14677932 + L1MEc LINE L1 518 695 -5520 2157 124 3 7 chr12 129604557 129604864 -14677625 + AluSx SINE Alu 1 306 -6 3286 246 105 26 chr12 129604864 129605048 -14677441 + L1MEc LINE L1 695 863 -5352 2076 124 0 3 chr12 129605048 129605350 -14677139 + AluSx SINE Alu 1 301 0 3286 246 105 26 chr12 129605350 129605648 -14676841 + L1MEc LINE L1 863 1353 -4862 22 0 0 0 chr12 129605708 129605730 -14676759 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr12 129605732 129605757 -14676732 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1316 164 139 8 chr12 129605759 129605874 -14676615 - AluSg1 SINE Alu -33 276 177 234 0 0 0 chr12 129605874 129605900 -14676589 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1316 164 139 8 chr12 129605900 129606028 -14676461 - AluSg1 SINE Alu -132 177 1 2459 52 7 13 chr12 129606092 129606400 -14676089 - AluY SINE Alu -5 306 1 311 250 0 0 chr12 129606400 129606468 -14676021 + LTR41 LTR ERVL 109 176 -597 325 203 27 0 chr12 129606678 129606752 -14675737 + L1MA10 LINE L1 6258 6333 -1 2221 126 0 0 chr12 129606885 129607187 -14675302 - AluSx SINE Alu -9 303 2 2169 104 27 3 chr12 129608074 129608372 -14674117 - AluSg SINE Alu -5 305 1 332 216 68 0 chr12 129608551 129608625 -14673864 - MIR SINE MIR -96 166 88 2040 126 3 10 chr12 129609443 129609752 -14672737 + AluSx SINE Alu 1 307 -5 765 190 0 63 chr12 129609777 129609919 -14672570 + FLAM_A SINE Alu 1 133 0 429 257 92 9 chr12 129610602 129610711 -14671778 - MER103 DNA DNA -48 118 1 1702 121 62 7 chr12 129610724 129610997 -14671492 - AluSq SINE Alu -25 288 1 1074 166 55 9 chr12 129611053 129611270 -14671219 - L1MA9 LINE L1 0 6312 6086 301 249 94 78 chr12 129611577 129611722 -14670767 - MIR SINE MIR -61 147 32 326 249 21 95 chr12 129612188 129612254 -14670235 - L1MC4 LINE L1 -33 8009 7940 2304 71 0 4 chr12 129612254 129612534 -14669955 - AluY SINE Alu -12 299 21 326 249 21 95 chr12 129612534 129612656 -14669833 - L1MC4 LINE L1 -102 7940 7835 2051 130 7 7 chr12 129612860 129613152 -14669337 + AluJo SINE Alu 1 292 -20 24 0 0 0 chr12 129613372 129613396 -14669093 + AT_rich Low_complexity Low_complexity 1 24 0 379 289 58 31 chr12 129613635 129613796 -14668693 - L1ME4a LINE L1 -11 6110 5940 2248 94 7 7 chr12 129613796 129614095 -14668394 - AluSc SINE Alu -10 299 1 379 289 58 31 chr12 129614095 129614158 -14668331 - L1ME4a LINE L1 -181 5940 5880 342 256 37 89 chr12 129614318 129614418 -14668071 - L1MC5 LINE L1 -437 7524 7420 2332 60 0 53 chr12 129614418 129614737 -14667752 - AluY SINE Alu -9 302 1 342 256 37 89 chr12 129614737 129614882 -14667607 - L1MC5 LINE L1 -541 7420 7292 288 233 25 0 chr12 129615505 129615625 -14666864 + (TATATG)n Simple_repeat Simple_repeat 6 128 0 599 202 6 27 chr12 129615660 129615843 -14666646 + (TATG)n Simple_repeat Simple_repeat 2 180 0 21 82 0 0 chr12 129615958 129616007 -14666482 + AT_rich Low_complexity Low_complexity 1 49 0 188 177 0 16 chr12 129616007 129616028 -14666461 + A-rich Low_complexity Low_complexity 3 23 -40 909 203 44 0 chr12 129616028 129616186 -14666303 + FAM SINE Alu 2 166 -9 188 177 0 16 chr12 129616186 129616226 -14666263 + A-rich Low_complexity Low_complexity 23 63 0 363 60 0 0 chr12 129616290 129616340 -14666149 + (CA)n Simple_repeat Simple_repeat 1 50 0 1806 152 74 3 chr12 129616589 129616899 -14665590 + L1MB3 LINE L1 5435 5766 -417 2240 120 0 3 chr12 129616900 129617208 -14665281 + AluSx SINE Alu 1 307 -5 865 189 0 0 chr12 129617215 129617363 -14665126 + FRAM SINE Alu 11 158 -18 2453 131 26 3 chr12 129617379 129617761 -14664728 + L1MB3 LINE L1 5755 6145 -38 2335 94 0 0 chr12 129617762 129618059 -14664430 + AluSx SINE Alu 6 302 -10 2259 111 3 3 chr12 129618070 129618376 -14664113 + AluSq SINE Alu 1 306 -7 1914 143 17 0 chr12 129618385 129618672 -14663817 + AluSx SINE Alu 1 292 -20 2556 63 0 3 chr12 129619007 129619309 -14663180 + AluY SINE Alu 1 301 -10 1085 229 65 147 chr12 129619365 129619543 -14662946 + MLT1D LTR MaLR 5 196 -309 1956 131 54 3 chr12 129619543 129619840 -14662649 + AluSx SINE Alu 1 312 0 1085 229 65 147 chr12 129619840 129620151 -14662338 + MLT1D LTR MaLR 196 454 -51 855 134 0 0 chr12 129620151 129620270 -14662219 + FLAM_C SINE Alu 1 119 -24 1486 198 142 36 chr12 129620286 129620701 -14661788 + LTR2B LTR ERV1 32 490 0 435 205 13 0 chr12 129620730 129620808 -14661681 + AluJ/FRAM SINE Alu 218 296 -16 2048 98 25 14 chr12 129620816 129621136 -14661353 + AluSp SINE Alu 1 323 0 396 143 0 0 chr12 129621136 129621199 -14661290 + MLT1D LTR MaLR 443 505 0 852 292 107 23 chr12 129621203 129621432 -14661057 + L2 LINE L2 2887 3095 -218 1802 158 0 4 chr12 129621432 129621710 -14660779 - AluSx SINE Alu -15 297 21 852 292 107 23 chr12 129621710 129621874 -14660615 + L2 LINE L2 3095 3313 0 2028 120 41 0 chr12 129621974 129622265 -14660224 - AluSg SINE Alu -7 303 1 286 305 19 29 chr12 129622483 129622588 -14659901 - L2 LINE L2 0 3272 3169 949 145 0 0 chr12 129622589 129622720 -14659769 + FLAM_C SINE Alu 1 131 -2 1965 134 3 39 chr12 129622842 129623148 -14659341 - AluSx SINE Alu -17 295 1 1584 161 55 7 chr12 129623245 129623518 -14658971 - AluJb SINE Alu -22 290 5 912 216 124 5 chr12 129624229 129624423 -14658066 + MER20 DNA MER1_type 3 219 0 1730 180 18 0 chr12 129624487 129624770 -14657719 + AluJo SINE Alu 1 288 -24 979 144 0 0 chr12 129624780 129624926 -14657563 - L1MB7 LINE L1 -19 6165 6020 4312 130 36 17 chr12 129624926 129625077 -14657412 + L1MC1 LINE L1 5455 5602 -731 2523 59 0 7 chr12 129625077 129625380 -14657109 + AluY SINE Alu 2 302 -9 4312 130 36 17 chr12 129625380 129625926 -14656563 + L1MC1 LINE L1 5602 6165 -168 239 180 40 0 chr12 129625929 129625979 -14656510 + CT-rich Low_complexity Low_complexity 2 53 0 813 118 13 13 chr12 129625979 129626131 -14656358 + (TTCC)n Simple_repeat Simple_repeat 2 153 0 1661 141 19 22 chr12 129626133 129626403 -14656086 - AluJo SINE Alu -15 297 29 1035 169 12 6 chr12 129626403 129626575 -14655914 + L1MC1 LINE L1 6152 6324 -9 4119 178 22 8 chr12 129626673 129627032 -14655457 - L1MB7 LINE L1 -153 6031 5679 2563 58 0 0 chr12 129627032 129627340 -14655149 - AluY SINE Alu -3 308 1 4119 178 22 8 chr12 129627340 129627811 -14654678 - L1MB7 LINE L1 -505 5679 5191 2050 124 0 32 chr12 129628010 129628325 -14654164 - AluSx SINE Alu -7 305 1 209 264 19 0 chr12 129628366 129628419 -14654070 + GA-rich Low_complexity Low_complexity 2 55 0 221 179 0 0 chr12 129628819 129628858 -14653631 - MER5B DNA MER1_type -1 177 139 2122 111 9 29 chr12 129628858 129629173 -14653316 - THE1B LTR MaLR 0 364 56 2237 105 0 7 chr12 129630873 129631179 -14651310 - AluSq SINE Alu -9 304 1 251 276 50 44 chr12 129631213 129631394 -14651095 - L1ME4a LINE L1 -4 6117 5936 1874 136 23 29 chr12 129631415 129631724 -14650765 - AluSx SINE Alu -5 307 1 2212 108 0 3 chr12 129631727 129632022 -14650467 - AluSg SINE Alu -16 294 1 1775 179 0 7 chr12 129632032 129632323 -14650166 - AluJo SINE Alu -23 289 1 2290 94 0 10 chr12 129632337 129632636 -14649853 - AluSx SINE Alu -16 296 1 1945 136 3 3 chr12 129632646 129632932 -14649557 - AluSx SINE Alu -19 293 8 346 217 14 0 chr12 129632941 129633010 -14649479 - MER58C DNA MER1_type -102 113 44 818 215 84 141 chr12 129633110 129633911 -14648578 - L1MC4 LINE L1 -643 7399 6640 736 154 0 70 chr12 129634192 129634335 -14648154 + FLAM_A SINE Alu 1 133 0 1260 160 0 0 chr12 129634667 129634855 -14647634 - 7SLRNA srpRNA srpRNA -9 311 124 2617 46 0 0 chr12 129634874 129635177 -14647312 - AluYa5 SINE Alu -8 303 1 286 245 113 113 chr12 129635186 129635390 -14647099 - MIR SINE MIR -55 207 4 184 231 0 62 chr12 129635539 129635604 -14646885 - L3 LINE CR1 -15 1562 1502 877 194 41 18 chr12 129635679 129635849 -14646640 + MER5B DNA MER1_type 3 176 -2 278 229 236 36 chr12 129636142 129636194 -14646295 - MIR SINE MIR 0 262 222 1500 170 4 12 chr12 129636194 129636447 -14646042 - AluJo SINE Alu -15 297 47 278 229 236 36 chr12 129636447 129636534 -14645955 - MIR SINE MIR -40 222 95 2317 66 0 14 chr12 129636745 129637060 -14645429 + AluY SINE Alu 1 311 0 3060 204 40 9 chr12 129637121 129637221 -14645268 + L1MB7 LINE L1 5509 5604 -580 1812 147 70 0 chr12 129637221 129637506 -14644983 + AluJo SINE Alu 1 305 -7 3060 204 40 9 chr12 129637506 129638051 -14644438 + L1MB7 LINE L1 5604 6174 -10 854 115 39 23 chr12 129639094 129639224 -14643265 - FLAM_C SINE Alu -1 132 1 2234 98 3 0 chr12 129639237 129639524 -14642965 - AluSc SINE Alu -16 293 6 284 256 49 37 chr12 129639889 129639971 -14642518 + MIR3 SINE MIR 77 159 -49 190 292 31 108 chr12 129640105 129640179 -14642310 - L2 LINE L2 -10 3262 3184 2212 97 0 0 chr12 129640179 129640457 -14642032 + AluSx SINE Alu 1 278 -34 396 0 0 0 chr12 129640457 129640501 -14641988 + (CA)n Simple_repeat Simple_repeat 2 45 0 190 292 31 108 chr12 129640501 129640555 -14641934 - L2 LINE L2 -86 3186 3143 2267 103 0 10 chr12 129640612 129640912 -14641577 - AluSx SINE Alu -15 297 1 183 80 0 0 chr12 129641145 129641170 -14641319 + (TTCCC)n Simple_repeat Simple_repeat 4 28 0 351 148 0 0 chr12 129641408 129641469 -14641020 + AluSp/q SINE Alu 240 300 -3 615 329 52 5 chr12 129641645 129641858 -14640631 + MIR SINE MIR 25 247 -15 351 375 102 25 chr12 129642439 129642762 -14639727 - L2 LINE L2 -1 3271 2924 3245 22 0 0 chr12 129643254 129643625 -14638864 - L1P LINE L1 -1193 4953 4583 8244 19 5 0 chr12 129643625 129644575 -14637914 + L1PA3 LINE L1 5197 6150 -5 681 238 64 6 chr12 129645086 129645258 -14637231 - MIR SINE MIR -24 238 57 188 231 0 0 chr12 129645295 129645334 -14637155 + L2 LINE L2 3186 3224 -48 290 219 62 0 chr12 129646100 129646164 -14636325 + MIR3 SINE MIR 118 185 -23 450 259 29 7 chr12 129646261 129646400 -14636089 - MIR SINE MIR -43 219 78 23 0 0 0 chr12 129646624 129646647 -14635842 + AT_rich Low_complexity Low_complexity 1 23 0 626 191 0 9 chr12 129646832 129646937 -14635552 - FAM SINE Alu -15 170 67 444 216 52 0 chr12 129647077 129647174 -14635315 + U13 snRNA snRNA 1 102 -2 380 199 110 88 chr12 129647249 129647385 -14635104 + MIR3 SINE MIR 68 206 -2 226 275 29 14 chr12 129647400 129647469 -14635020 + L2 LINE L2 3234 3303 -10 258 323 78 85 chr12 129647635 129647954 -14634535 - L2 LINE L2 -41 3231 2915 493 270 119 18 chr12 129648142 129648512 -14633977 - L1MEd LINE L1 -4864 1255 950 1496 187 63 44 chr12 129648515 129648902 -14633587 - L1ME LINE L1 -572 5592 5201 2621 61 0 3 chr12 129648902 129649214 -14633275 - AluY SINE Alu 0 311 1 1496 187 63 44 chr12 129649214 129649268 -14633221 - L1ME LINE L1 -963 5201 5149 1761 160 38 3 chr12 129649291 129649579 -14632910 - AluSx SINE Alu -14 298 1 407 264 71 89 chr12 129649579 129649679 -14632810 - L1MEd LINE L1 -5164 955 855 2121 108 0 51 chr12 129649679 129649993 -14632496 - AluSg SINE Alu -12 298 1 407 264 71 89 chr12 129649993 129650286 -14632203 - L1MEd LINE L1 -5264 855 569 * 1357 217 24 3 chr12 129650285 129650575 -14631914 - L1MD3 LINE L1 -18 7977 7682 2130 98 0 11 chr12 129650575 129650891 -14631598 - AluSx SINE Alu 0 313 1 2041 136 3 0 chr12 129650899 129651186 -14631303 - AluJo SINE Alu -24 288 1 2209 189 49 4 chr12 129651186 129651512 -14630977 - L1MB2 LINE L1 -39 6132 5774 531 0 0 0 chr12 129651512 129651571 -14630918 + (TA)n Simple_repeat Simple_repeat 2 60 0 2209 189 49 4 chr12 129651571 129651707 -14630782 - L1MB2 LINE L1 -397 5774 5646 763 206 0 0 chr12 129651843 129651969 -14630520 + FLAM_C SINE Alu 1 126 -7 1887 155 0 3 chr12 129652239 129652547 -14629942 + AluJb SINE Alu 1 307 0 2189 85 14 17 chr12 129652547 129652840 -14629649 + AluSg SINE Alu 2 293 -17 2449 96 0 0 chr12 129653292 129653604 -14628885 + AluSx SINE Alu 1 312 0 573 266 78 7 chr12 129654031 129654185 -14628304 + MIR SINE MIR 31 195 -67 544 296 21 0 chr12 129654274 129654416 -14628073 - L2 LINE L2 -215 3057 2913 712 165 15 0 chr12 129654422 129654555 -14627934 + L1MA8 LINE L1 6005 6139 -152 1604 141 60 7 chr12 129654555 129654838 -14627651 + AluSg SINE Alu 1 298 -12 2121 108 13 0 chr12 129654839 129655145 -14627344 + AluSg SINE Alu 1 310 0 1729 173 10 3 chr12 129655177 129655477 -14627012 + AluSx SINE Alu 1 302 -10 1995 121 7 0 chr12 129655704 129656002 -14626487 + AluSx SINE Alu 13 312 0 3384 132 59 6 chr12 129656013 129656537 -14625952 + LTR39 LTR ERV1 232 783 0 2069 114 3 7 chr12 129656615 129656912 -14625577 - AluSx SINE Alu -16 296 1 1591 162 0 54 chr12 129657130 129657444 -14625045 + AluJo SINE Alu 1 297 -15 2074 128 0 0 chr12 129657452 129657756 -14624733 + AluSx SINE Alu 1 304 -8 1775 153 7 0 chr12 129658547 129658834 -14623655 - AluJo SINE Alu -23 289 1 2256 196 130 26 chr12 129658843 129659374 -14623115 - MLT1E LTR MaLR 0 593 8 21 0 0 0 chr12 129659911 129659932 -14622557 + AT_rich Low_complexity Low_complexity 1 21 0 2211 86 3 0 chr12 129660017 129660309 -14622180 + AluSx SINE Alu 1 293 -19 320 337 58 34 chr12 129660360 129660565 -14621924 + MLT1K LTR MaLR 96 305 -283 1382 153 50 20 chr12 129660596 129660896 -14621593 - MER33 DNA MER1_type -1 323 15 229 182 18 91 chr12 129660864 129660919 -14621570 - MER3 DNA MER1_type -116 93 43 * 339 323 19 24 chr12 129661003 129661181 -14621308 + MLT1K LTR MaLR 432 588 0 327 173 0 0 chr12 129661273 129661325 -14621164 + FLAM_A SINE Alu 78 129 -4 1016 198 11 0 chr12 129661331 129661513 -14620976 - MER20 DNA MER1_type 0 219 36 588 188 53 23 chr12 129661744 129661877 -14620612 - AluJo SINE Alu -174 138 2 25 0 0 0 chr12 129661878 129661903 -14620586 + AT_rich Low_complexity Low_complexity 1 25 0 548 277 0 8 chr12 129661907 129662037 -14620452 + L1MC/D LINE L1 5525 5653 -2155 401 175 0 0 chr12 129662069 129662147 -14620342 + AluS SINE Alu 226 303 0 1105 79 40 0 chr12 129662368 129662520 -14619969 + LTR24C LTR ERV1 1 158 -477 2368 78 7 0 chr12 129662537 129662846 -14619643 - AluY SINE Alu 0 311 1 210 352 62 23 chr12 129663115 129663243 -14619246 + MIR SINE MIR 84 216 -46 557 194 11 144 chr12 129663558 129663623 -14618866 - MER5B DNA MER1_type 0 178 106 2008 147 0 0 chr12 129663623 129663929 -14618560 + AluSq SINE Alu 1 306 -7 557 194 11 144 chr12 129663929 129663941 -14618548 - MER5B DNA MER1_type -72 106 94 1633 139 50 4 chr12 129663941 129664221 -14618268 + AluJb SINE Alu 1 293 -19 557 194 11 144 chr12 129664221 129664322 -14618167 - MER5B DNA MER1_type -84 94 23 385 291 50 28 chr12 129664323 129664464 -14618025 - MER5A DNA MER1_type -11 178 35 1210 220 48 17 chr12 129664808 129665099 -14617390 - MLT1E1 LTR MaLR -66 588 289 2079 134 0 0 chr12 129665266 129665572 -14616917 + AluSx SINE Alu 1 306 -6 613 245 80 51 chr12 129665573 129665810 -14616679 - MIR SINE MIR -16 246 3 851 205 113 135 chr12 129665891 129666448 -14616041 - L1ME3A LINE L1 -30 6140 5596 362 231 0 83 chr12 129666426 129666534 -14615955 - L1ME LINE L1 -431 5690 5592 * 2208 108 0 0 chr12 129666806 129667103 -14615386 + AluSx SINE Alu 1 297 -15 277 279 0 0 chr12 129667341 129667402 -14615087 + L2 LINE L2 3207 3267 -5 458 248 85 19 chr12 129668955 129669132 -14613357 + MIR SINE MIR 75 256 -6 2153 86 3 13 chr12 129669228 129669530 -14612959 + AluSx SINE Alu 1 299 -13 2410 78 0 3 chr12 129669571 129669880 -14612609 + AluSg SINE Alu 1 308 -2 1822 136 40 3 chr12 129670305 129670606 -14611883 - AluSx SINE Alu 0 312 1 1976 123 36 0 chr12 129670629 129670930 -14611559 - AluSx SINE Alu 0 312 1 1521 233 56 124 chr12 129670936 129672010 -14610479 + L2 LINE L2 2275 3283 -30 1852 139 10 3 chr12 129672406 129672701 -14609788 + AluSx SINE Alu 1 297 -15 1602 171 10 3 chr12 129672737 129673029 -14609460 + AluJb SINE Alu 1 294 -18 26 30 0 0 chr12 129673249 129673282 -14609207 + AT_rich Low_complexity Low_complexity 1 33 0 2073 123 0 0 chr12 129673283 129673575 -14608914 - AluSx SINE Alu -20 292 1 276 159 0 0 chr12 129673576 129673620 -14608869 + Charlie1 DNA MER1_type 2717 2760 -1 1603 163 10 17 chr12 129673895 129674189 -14608300 - AluJb SINE Alu -10 302 11 747 144 0 48 chr12 129674196 129674224 -14608265 - FLAM_C SINE Alu -192 120 92 4632 94 6 2 chr12 129674224 129674854 -14607635 - LTR10E LTR ERV1 0 633 1 747 144 0 48 chr12 129674854 129674950 -14607539 - FLAM_C SINE Alu -220 92 2 529 298 68 20 chr12 129675657 129675905 -14606584 + MIR SINE MIR 3 262 0 276 231 0 0 chr12 129676767 129676832 -14605657 + (CCG)n Simple_repeat Simple_repeat 3 67 0 228 135 0 0 chr12 129676949 129676986 -14605503 + (CAG)n Simple_repeat Simple_repeat 3 39 0 217 222 0 56 chr12 129677154 129677358 -14605131 + G-rich Low_complexity Low_complexity 1 192 0 300 191 22 45 chr12 129679490 129679579 -14602910 + L1MB2 LINE L1 6029 6115 -56 25 31 0 0 chr12 129679654 129679686 -14602803 + AT_rich Low_complexity Low_complexity 1 32 0 1367 160 64 18 chr12 129679898 129680179 -14602310 - AluJo SINE Alu -18 294 1 2138 65 0 35 chr12 129680467 129680757 -14601732 - AluY SINE Alu -31 280 1 2127 99 10 7 chr12 129681107 129681410 -14601079 - AluSx SINE Alu -8 304 1 2196 97 0 0 chr12 129681992 129682282 -14600207 - AluSg SINE Alu -20 290 1 1536 175 69 12 chr12 129682282 129682602 -14599887 - L1MC3 LINE L1 -9 7776 7439 463 111 56 0 chr12 129683198 129683288 -14599201 + AluY SINE Alu 2 96 -215 1071 214 0 5 chr12 129683967 129684182 -14598307 + AluJb SINE Alu 84 297 -15 210 37 0 0 chr12 129684189 129684216 -14598273 + (GGGAGA)n Simple_repeat Simple_repeat 6 32 0 654 236 6 24 chr12 129684218 129684383 -14598106 - MLT1H LTR MaLR -344 205 44 1693 154 7 7 chr12 129684389 129684682 -14597807 - AluJb SINE Alu -11 301 9 220 293 0 0 chr12 129684762 129684820 -14597669 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 295 197 0 49 chr12 129684828 129684889 -14597600 + LTR67 LTR ERVL 500 557 0 1982 111 0 4 chr12 129685118 129685398 -14597091 + AluSx SINE Alu 19 297 -15 1858 144 0 3 chr12 129685624 129685943 -14596546 + AluSx SINE Alu 1 318 0 292 269 0 51 chr12 129685999 129686077 -14596412 + MLT1K LTR MaLR 188 261 -327 1955 91 0 4 chr12 129686129 129686392 -14596097 + AluSx SINE Alu 49 310 -2 1637 149 76 3 chr12 129686475 129686764 -14595725 + AluSx SINE Alu 1 310 -2 2082 116 7 0 chr12 129686843 129687145 -14595344 + AluSc SINE Alu 1 304 -5 1990 131 0 3 chr12 129687396 129687693 -14594796 + AluJo SINE Alu 9 304 -8 1178 207 92 0 chr12 129688286 129688561 -14593928 - MLT1C LTR MaLR 0 467 159 1652 176 4 0 chr12 129688567 129688846 -14593643 + AluJo SINE Alu 1 280 -32 258 274 0 0 chr12 129688865 129688927 -14593562 - MLT1C LTR MaLR -353 114 53 917 199 27 11 chr12 129689060 129689246 -14593243 - LTR16A LTR ERVL 0 450 262 1260 151 5 27 chr12 129689249 129689468 -14593021 + AluJb SINE Alu 1 214 -98 604 231 103 6 chr12 129689484 129689640 -14592849 - LTR16A LTR ERVL -264 186 16 677 121 0 0 chr12 129689887 129689999 -14592490 - AluSg/x SINE Alu 0 301 190 269 234 170 0 chr12 129690119 129690213 -14592276 + L2 LINE L2 3188 3297 -16 1987 136 3 0 chr12 129690218 129690519 -14591970 + AluSx SINE Alu 1 302 -10 673 248 0 0 chr12 129690609 129690742 -14591747 + MER5A DNA MER1_type 3 135 -54 727 164 31 0 chr12 129690742 129690870 -14591619 + MLT1A1 LTR MaLR 1 132 -233 1704 119 56 11 chr12 129691012 129691281 -14591208 + AluSx SINE Alu 10 290 -22 1026 160 0 11 chr12 129691282 129691463 -14591026 + AluSq SINE Alu 132 310 -3 2003 128 0 13 chr12 129691465 129691599 -14590890 + AluSg SINE Alu 1 135 -175 2328 74 0 10 chr12 129691599 129691908 -14590581 + AluY SINE Alu 1 306 -5 2003 128 0 13 chr12 129691908 129692079 -14590410 + AluSg SINE Alu 135 302 -8 848 131 181 6 chr12 129692079 129692239 -14590250 - MSTC LTR MaLR -237 191 4 298 167 64 36 chr12 129692254 129692347 -14590142 + MLT1J1 LTR MaLR 347 425 -21 374 350 17 17 chr12 129692644 129692761 -14589728 + L2 LINE L2 3137 3253 -19 186 191 0 0 chr12 129692764 129692811 -14589678 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 1881 131 0 0 chr12 129693266 129693579 -14588910 + AluSx SINE Alu 1 313 0 3235 125 47 73 chr12 129693593 129693640 -14588849 + LTR26 LTR ERV1 3 50 -553 1609 159 33 0 chr12 129693640 129693910 -14588579 + AluJo SINE Alu 12 290 -22 2181 93 0 10 chr12 129693920 129694222 -14588267 + AluY SINE Alu 1 299 -12 3235 125 47 73 chr12 129694222 129694383 -14588106 + LTR26 LTR ERV1 59 223 -380 2218 104 0 0 chr12 129694383 129694682 -14587807 + AluSx SINE Alu 1 299 -13 3235 125 47 73 chr12 129694682 129695078 -14587411 + LTR26 LTR ERV1 223 603 0 2153 111 10 0 chr12 129695453 129695759 -14586730 - AluSp SINE Alu -2 311 3 1830 183 34 26 chr12 129695759 129696137 -14586352 + MLT1D LTR MaLR 125 505 0 4076 142 43 25 chr12 129696174 129696888 -14585601 - LTR8A LTR ERV1 0 727 1 1223 325 50 33 chr12 129696927 129697465 -14585024 - ERVL LTR ERVL -513 5251 4700 1967 137 0 0 chr12 129697465 129697757 -14584732 + AluSx SINE Alu 1 292 -20 1223 325 50 33 chr12 129697757 129697822 -14584667 - ERVL LTR ERVL -1064 4700 4638 578 174 64 0 chr12 129697822 129697931 -14584558 - MER74A LTR ERVL -7 551 436 290 274 68 113 chr12 129698040 129698306 -14584183 - L2 LINE L2 -89 3183 2930 1640 192 16 0 chr12 129698436 129698743 -14583746 + AluJo SINE Alu 1 312 0 206 268 0 0 chr12 129698875 129698916 -14583573 - L2 LINE L2 -87 3185 3145 865 154 11 63 chr12 129699131 129699306 -14583183 + FRAM SINE Alu 1 166 0 357 165 25 25 chr12 129699333 129699412 -14583077 + Charlie4a DNA MER1_type 65 143 -365 1414 153 0 4 chr12 129699420 129699655 -14582834 - AluJb SINE Alu -8 304 71 841 196 52 6 chr12 129699655 129699828 -14582661 + Charlie4a DNA MER1_type 155 335 -173 566 144 16 24 chr12 129699868 129699993 -14582496 + Charlie4a DNA MER1_type 325 448 -60 1942 115 3 19 chr12 129699993 129700206 -14582283 + AluSx SINE Alu 5 213 -99 2868 76 0 0 chr12 129700206 129700561 -14581928 - THE1A LTR MaLR 0 355 1 1942 115 3 19 chr12 129700561 129700660 -14581829 + AluSx SINE Alu 213 312 0 228 259 24 35 chr12 129700668 129700753 -14581736 + Charlie4a DNA MER1_type 425 508 0 410 200 22 33 chr12 129700808 129700898 -14581591 + ORSL DNA AcHobo 1 89 -186 1744 177 0 0 chr12 129700898 129701197 -14581292 + AluSq SINE Alu 1 299 -14 1229 137 5 10 chr12 129701198 129701395 -14581094 + AluJo SINE Alu 96 291 -21 198 0 0 0 chr12 129701395 129701417 -14581072 + (TA)n Simple_repeat Simple_repeat 2 23 0 1343 166 25 4 chr12 129701497 129701738 -14580751 - AluJo SINE Alu -34 278 33 638 234 41 0 chr12 129701747 129701918 -14580571 - L1MC/D LINE L1 -1988 5820 5643 4683 28 0 2 chr12 129701918 129702461 -14580028 - L1PA4 LINE L1 -5 6150 5609 1355 7 0 0 chr12 129702461 129702610 -14579879 + L1PA4 LINE L1 5476 5624 -531 523 267 169 34 chr12 129702609 129702875 -14579614 - L1MC/D LINE L1 -2155 5653 5352 * 1443 175 4 0 chr12 129702898 129703150 -14579339 - AluJb SINE Alu -13 299 47 1419 113 5 27 chr12 129703258 129703432 -14579057 - AluSg/x SINE Alu -6 304 128 262 0 26 26 chr12 129703432 129703471 -14579018 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2119 48 44 4 chr12 129703471 129703742 -14578747 - AluY SINE Alu -29 282 1 1419 113 5 27 chr12 129703742 129703788 -14578701 - AluSg/x SINE Alu -180 130 88 2110 171 57 49 chr12 129703799 129703846 -14578643 - L1MB4 LINE L1 -1 6179 6134 2076 90 30 0 chr12 129703846 129704145 -14578344 - AluSx SINE Alu -4 308 1 2110 171 57 49 chr12 129704145 129704309 -14578180 - L1MB4 LINE L1 -46 6134 5973 2043 114 0 19 chr12 129704309 129704320 -14578169 - AluSx SINE Alu 0 312 302 202 39 0 0 chr12 129704320 129704346 -14578143 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2043 114 0 19 chr12 129704346 129704641 -14577848 - AluSx SINE Alu -10 302 1 2110 171 57 49 chr12 129704641 129705120 -14577369 - L1MB4 LINE L1 -207 5973 5479 184 111 81 20 chr12 129705120 129705219 -14577270 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 282 193 133 0 chr12 129705253 129705336 -14577153 - L1MB4 LINE L1 -709 5474 5381 1719 161 3 10 chr12 129705957 129706248 -14576241 - AluJo SINE Alu -23 289 1 382 303 7 35 chr12 129706528 129706968 -14575521 + G-rich Low_complexity Low_complexity 1 427 0 1045 196 55 0 chr12 129707100 129707320 -14575169 - AluSc SINE Alu -73 236 5 3049 119 35 0 chr12 129707332 129707811 -14574678 + LTR24C LTR ERV1 140 635 0 629 226 7 7 chr12 129707887 129708024 -14574465 + BC200 scRNA scRNA 1 137 -63 2069 101 7 3 chr12 129708088 129708396 -14574093 + AluY SINE Alu 1 309 -2 659 162 0 0 chr12 129708396 129708501 -14573988 - AluJo/FLAM SINE Alu -203 109 5 926 158 0 0 chr12 129708966 129709099 -14573390 + FLAM_C SINE Alu 1 133 0 328 233 47 23 chr12 129709146 129709232 -14573257 - MIR SINE MIR -71 191 104 2025 208 62 19 chr12 129709244 129709312 -14573177 - L1MB7 LINE L1 -60 6124 6060 189 0 0 0 chr12 129709312 129709333 -14573156 + (TA)n Simple_repeat Simple_repeat 2 22 0 2066 117 3 3 chr12 129709333 129709631 -14572858 - AluSx SINE Alu -14 298 1 2025 208 62 19 chr12 129709631 129710042 -14572447 - L1MB7 LINE L1 -123 6061 5623 1122 146 45 59 chr12 129710188 129710347 -14572142 - MER20 DNA MER1_type 0 219 62 2250 98 0 0 chr12 129710347 129710652 -14571837 + AluSx SINE Alu 1 305 -7 1122 146 45 59 chr12 129710652 129710712 -14571777 - MER20 DNA MER1_type -157 62 3 331 237 130 43 chr12 129711328 129711589 -14570900 - MLT1B LTR MaLR 0 549 242 6376 53 3 27 chr12 129711623 129712485 -14570004 - SVA Other Other 0 1386 545 393 136 0 0 chr12 129712967 129713026 -14569463 + Alu SINE Alu 235 293 -8 1531 168 47 20 chr12 129713652 129713949 -14568540 + AluJo SINE Alu 1 305 -7 395 273 133 0 chr12 129714068 129714218 -14568271 + MIR3 SINE MIR 30 199 -9 229 264 19 0 chr12 129714976 129715029 -14567460 + GA-rich Low_complexity Low_complexity 1 54 0 346 242 186 16 chr12 129715603 129715727 -14566762 + MIR SINE MIR 53 197 -65 2417 81 0 0 chr12 129716104 129716411 -14566078 - AluY SINE Alu -4 307 1 782 132 16 116 chr12 129716566 129716632 -14565857 - L1MB7 LINE L1 -7 6177 6106 1392 193 80 22 chr12 129716632 129716907 -14565582 + AluJo SINE Alu 1 291 -11 782 132 16 116 chr12 129716907 129717030 -14565459 - L1MB7 LINE L1 -78 6106 6007 1000 149 11 17 chr12 129717033 129717207 -14565282 - MLT1B LTR MaLR -215 175 3 284 214 345 21 chr12 129717528 129717673 -14564816 - L2 LINE L2 0 3313 3122 1823 120 3 11 chr12 129717738 129718021 -14564468 + AluSx SINE Alu 1 281 -31 486 291 82 7 chr12 129718731 129718898 -14563591 - MIR3 SINE MIR -32 176 3 378 280 10 0 chr12 129718923 129719023 -14563466 + MLT1J1 LTR MaLR 346 446 0 218 262 229 0 chr12 129719261 129719322 -14563167 - MIR3 SINE MIR -20 188 114 879 248 190 3 chr12 129719343 129719631 -14562858 + MLT1J1 LTR MaLR 1 328 -122 192 267 0 0 chr12 129719874 129719919 -14562570 + MIR SINE MIR 90 134 -128 2177 73 17 0 chr12 129721425 129721714 -14560775 + AluSq SINE Alu 1 294 -19 2085 110 3 26 chr12 129721723 129722032 -14560457 + AluSx SINE Alu 1 302 -10 708 169 111 21 chr12 129722032 129722453 -14560036 + L1MC3 LINE L1 7086 7507 -286 362 184 0 23 chr12 129722453 129722540 -14559949 + GA-rich Low_complexity Low_complexity 3 87 0 341 216 0 0 chr12 129722533 129722577 -14559912 + G-rich Low_complexity Low_complexity 4 47 -53 * 1893 89 9 76 chr12 129722577 129722893 -14559596 + AluSx SINE Alu 18 312 0 341 216 0 0 chr12 129722893 129722945 -14559544 + G-rich Low_complexity Low_complexity 46 100 0 465 137 0 14 chr12 129722950 129723023 -14559466 + MLT1A1 LTR MaLR 153 224 -141 721 201 67 0 chr12 129723691 129723870 -14558619 - AluJb SINE Alu -119 193 3 1791 158 17 3 chr12 129723890 129724188 -14558301 - AluSx SINE Alu -10 302 1 958 148 76 99 chr12 129724209 129724408 -14558081 - MER20 DNA MER1_type -1 218 23 1981 136 3 0 chr12 129724408 129724702 -14557787 + AluSx SINE Alu 1 295 -17 958 148 76 99 chr12 129724702 129724725 -14557764 - MER20 DNA MER1_type -196 23 1 282 276 32 89 chr12 129724744 129724867 -14557622 - MIR3 SINE MIR -44 164 49 566 175 91 21 chr12 129724868 129725011 -14557478 - AluJo SINE Alu -5 307 155 761 136 0 17 chr12 129725012 129725130 -14557359 - AluJo SINE Alu -186 116 1 665 275 80 20 chr12 129725182 129725203 -14557286 - MIR SINE MIR -15 247 229 1666 176 13 13 chr12 129725203 129725515 -14556974 - AluJo SINE Alu 0 312 1 665 275 80 20 chr12 129725515 129725693 -14556796 - MIR SINE MIR -33 229 36 260 195 0 91 chr12 129726751 129726828 -14555661 + MIR SINE MIR 153 222 -40 364 284 23 0 chr12 129727006 129727094 -14555395 + Charlie1a DNA MER1_type 1 90 -1365 3990 166 121 18 chr12 129727131 129727950 -14554539 + Charlie1a DNA MER1_type 73 975 -480 2010 104 3 20 chr12 129727952 129728251 -14554238 + AluSx SINE Alu 3 296 -16 976 172 21 11 chr12 129728377 129728563 -14553926 - AluJo SINE Alu -115 197 10 350 269 65 108 chr12 129728697 129728976 -14553513 + L2 LINE L2 2925 3191 -81 850 135 0 0 chr12 129729362 129729488 -14553001 + FLAM_C SINE Alu 1 126 -17 2090 105 6 13 chr12 129729492 129729825 -14552664 + AluSx SINE Alu 1 312 0 877 133 0 0 chr12 129730048 129730176 -14552313 - AluSg/x SINE Alu -18 292 165 1916 139 0 0 chr12 129730176 129730463 -14552026 + AluSx SINE Alu 14 300 -12 1031 145 13 0 chr12 129730464 129730623 -14551866 + AluSg/x SINE Alu 136 296 -16 314 89 71 18 chr12 129730623 129730679 -14551810 - MER20 DNA MER1_type -158 61 3 1189 187 60 7 chr12 129731382 129731665 -14550824 - AluJo SINE Alu -4 298 1 2361 76 0 0 chr12 129731745 129732047 -14550442 - AluSc SINE Alu -7 302 1 221 328 8 49 chr12 129732282 129732404 -14550085 - MIR SINE MIR -54 208 92 197 208 83 0 chr12 129732598 129732646 -14549843 + L2 LINE L2 3262 3313 0 201 245 20 0 chr12 129732649 129732698 -14549791 - L2 LINE L2 -8 3305 3256 832 279 82 59 chr12 129732770 129733102 -14549387 + MERVL LTR ERVL 4105 4428 -1057 2343 102 32 51 chr12 129733102 129733314 -14549175 - THE1B LTR MaLR 0 364 150 2163 105 3 0 chr12 129733314 129733610 -14548879 + AluSx SINE Alu 1 297 -15 2167 101 0 22 chr12 129733610 129733928 -14548561 + AluSp SINE Alu 1 311 -2 2343 102 32 51 chr12 129733928 129734085 -14548404 - THE1B LTR MaLR -212 152 1 832 279 82 59 chr12 129734085 129734243 -14548246 + MERVL LTR ERVL 4428 4606 -879 2013 102 7 3 chr12 129734685 129734968 -14547521 + AluSx SINE Alu 5 288 -24 1987 103 3 23 chr12 129735085 129735386 -14547103 - AluSg SINE Alu -15 295 1 839 237 6 6 chr12 129736272 129736445 -14546044 - AluJb SINE Alu -1 311 139 234 391 96 25 chr12 129736560 129736923 -14545566 + L2 LINE L2 2379 2767 -547 1500 155 3 68 chr12 129736943 129737159 -14545330 - AluJb SINE Alu 0 312 123 2002 124 7 0 chr12 129737159 129737468 -14545021 + AluSx SINE Alu 1 311 0 1500 155 3 68 chr12 129737468 129737584 -14544905 - AluJb SINE Alu -189 123 1 970 142 71 22 chr12 129737593 129737776 -14544713 - AluJb SINE Alu -3 309 118 186 239 28 70 chr12 129737986 129738057 -14544432 - MIR SINE MIR -10 252 185 1109 191 5 5 chr12 129738080 129738289 -14544200 + AluJb SINE Alu 84 292 -20 193 328 33 0 chr12 129738290 129738351 -14544138 - L2 LINE L2 -22 3291 3229 417 281 26 9 chr12 129738368 129738482 -14544007 - MIR SINE MIR -144 118 3 2004 94 59 0 chr12 129738527 129738813 -14543676 - AluY SINE Alu -8 303 1 456 188 24 0 chr12 129739058 129739143 -14543346 + FRAM SINE Alu 45 131 -45 1851 147 31 0 chr12 129739204 129739496 -14542993 - AluJb SINE Alu -10 302 2 2021 117 0 0 chr12 129739598 129739879 -14542610 - AluSx SINE Alu -23 289 9 1984 98 17 17 chr12 129739892 129740187 -14542302 - AluSp SINE Alu -13 300 6 2111 162 79 43 chr12 129740187 129740656 -14541833 - L1MC4a LINE L1 -726 7082 6597 2399 64 0 10 chr12 129741386 129741700 -14540789 - AluY SINE Alu 0 311 1 187 300 0 0 chr12 129741808 129741858 -14540631 + MIR SINE MIR 2 51 -211 1086 163 75 38 chr12 129742181 129742260 -14540229 + L1MA9 LINE L1 6060 6135 -177 1737 131 57 7 chr12 129742260 129742543 -14539946 + AluSg SINE Alu 1 297 -13 1086 163 75 38 chr12 129742543 129742703 -14539786 + L1MA9 LINE L1 6135 6308 -4 1476 207 64 78 chr12 129742828 129743165 -14539324 - MLT1D LTR MaLR -9 496 156 1566 168 56 0 chr12 129743165 129743450 -14539039 + AluJb SINE Alu 1 301 -11 1476 207 64 78 chr12 129743450 129743491 -14538998 - MLT1D LTR MaLR -349 156 116 1920 140 13 0 chr12 129743491 129743791 -14538698 - AluSq SINE Alu -9 304 1 1476 207 64 78 chr12 129743791 129743822 -14538667 - MLT1D LTR MaLR -389 116 86 1812 146 3 7 chr12 129743822 129744123 -14538366 - AluSx SINE Alu -10 302 3 1476 207 64 78 chr12 129744123 129744214 -14538275 - MLT1D LTR MaLR -419 86 1 202 246 0 66 chr12 129744216 129744277 -14538212 + MIR SINE MIR 204 260 -2 1099 180 0 5 chr12 129744564 129744758 -14537731 + AluJo SINE Alu 1 193 -119 316 182 17 13 chr12 129744930 129745003 -14537486 - AluS SINE Alu -245 57 1 1151 189 83 103 chr12 129745022 129745258 -14537231 - L1ME1 LINE L1 -5 6161 5922 1878 154 0 10 chr12 129745258 129745563 -14536926 - AluJo SINE Alu -2 310 9 1151 189 83 103 chr12 129745563 129745670 -14536819 - L1ME1 LINE L1 -244 5922 5825 2275 105 0 0 chr12 129745670 129745974 -14536515 - AluSx SINE Alu -8 304 1 1151 189 83 103 chr12 129745974 129746037 -14536452 - L1ME1 LINE L1 -341 5825 5762 624 158 13 99 chr12 129746355 129746507 -14535982 - AluJo SINE Alu -146 166 28 888 102 8 0 chr12 129747010 129747137 -14535352 - AluSq/x SINE Alu -179 133 6 1606 157 10 13 chr12 129747152 129747452 -14535037 - AluJb SINE Alu -13 299 1 358 50 50 0 chr12 129747463 129747523 -14534966 + (TTTTA)n Simple_repeat Simple_repeat 4 66 0 1916 137 7 0 chr12 129747526 129747811 -14534678 - AluSx SINE Alu -25 287 1 1769 164 0 0 chr12 129747811 129748092 -14534397 - L1MB5 LINE L1 -30 6144 5864 1685 115 4 15 chr12 129748133 129748393 -14534096 + AluSx SINE Alu 55 311 -1 1749 138 33 0 chr12 129748825 129749100 -14533389 + AluSx SINE Alu 1 284 -28 960 110 0 0 chr12 129749128 129749255 -14533234 - THE1B LTR MaLR -194 170 44 879 272 101 43 chr12 129749420 129749858 -14532631 - MARNA DNA Mariner -23 563 101 216 135 0 0 chr12 129749975 129750012 -14532477 + (CA)n Simple_repeat Simple_repeat 2 38 0 195 316 34 34 chr12 129750014 129750131 -14532358 + MER5B DNA MER1_type 59 175 -3 2212 78 7 0 chr12 129750256 129750551 -14531938 - AluY SINE Alu -14 297 1 567 192 102 57 chr12 129750617 129750794 -14531695 + L2 LINE L2 3125 3309 -4 422 267 80 28 chr12 129750900 129751066 -14531423 + MIR3 SINE MIR 29 198 -10 601 235 64 10 chr12 129751143 129751347 -14531142 + AluSc SINE Alu 5 219 -90 1958 109 14 0 chr12 129751481 129751764 -14530725 - AluSp SINE Alu -26 287 1 1367 131 147 8 chr12 129751942 129752209 -14530280 + AluSg1 SINE Alu 1 301 0 1836 157 0 16 chr12 129752215 129752527 -14529962 + AluJo SINE Alu 1 307 -5 1729 170 3 16 chr12 129752957 129753268 -14529221 + AluJo SINE Alu 1 307 -5 243 0 0 0 chr12 129753268 129753295 -14529194 + (GA)n Simple_repeat Simple_repeat 2 28 0 195 114 0 0 chr12 129753463 129753498 -14528991 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2235 75 3 7 chr12 129753530 129753822 -14528667 - AluSg SINE Alu -6 304 14 2373 76 7 0 chr12 129754318 129754622 -14527867 - AluSg SINE Alu -4 306 1 711 271 95 42 chr12 129754976 129755312 -14527177 - L1ME LINE L1 -328 5793 5468 2130 128 0 0 chr12 129756052 129756357 -14526132 - AluSx SINE Alu -7 305 1 1333 258 28 40 chr12 129756565 129756964 -14525525 - LTR16A LTR ERVL -38 412 19 380 70 0 0 chr12 129757070 129757127 -14525362 - L1MB4 LINE L1 0 6180 6124 1822 132 7 3 chr12 129757139 129757426 -14525063 - AluSx SINE Alu -21 291 4 5157 69 33 52 chr12 129758132 129759117 -14523372 - SVA Other Other -518 868 57 368 20 20 0 chr12 129759117 129759166 -14523323 + (GGGAGA)n Simple_repeat Simple_repeat 1 50 0 257 209 225 16 chr12 129759804 129759933 -14522556 - L1ME4a LINE L1 -5 6116 5961 34 84 0 0 chr12 129760006 129760089 -14522400 + AT_rich Low_complexity Low_complexity 1 83 0 598 199 30 23 chr12 129760328 129760459 -14522030 - AluJo SINE Alu -178 134 3 211 182 23 23 chr12 129760576 129760620 -14521869 + MIR SINE MIR 198 241 -21 2161 104 0 19 chr12 129760696 129761003 -14521486 + AluSx SINE Alu 1 301 -11 536 249 27 85 chr12 129761122 129761363 -14521126 - L1ME4a LINE L1 -513 5608 5392 2093 113 3 3 chr12 129761368 129761679 -14520810 - AluSx SINE Alu -1 311 1 1778 94 56 15 chr12 129762008 129762275 -14520214 - AluSp SINE Alu -35 278 1 1499 152 144 0 chr12 129762791 129763055 -14519434 - AluJb SINE Alu 0 302 1 1333 269 109 51 chr12 129763497 129764309 -14518180 - L2 LINE L2 -120 3193 2310 1920 153 3 3 chr12 129765149 129765456 -14517033 - AluJb SINE Alu -5 307 1 253 213 49 49 chr12 129765464 129765525 -14516964 - MIR SINE MIR -60 148 88 2230 92 0 0 chr12 129765991 129766283 -14516206 - AluSc SINE Alu -17 292 1 321 98 20 20 chr12 129766709 129766760 -14515729 - Alu SINE Alu -248 51 1 2167 92 3 7 chr12 129766764 129767056 -14515433 - AluSg SINE Alu -19 291 1 182 286 0 48 chr12 129767071 129767134 -14515355 + MIR SINE MIR 203 262 0 458 19 0 0 chr12 129767248 129767300 -14515189 + (TG)n Simple_repeat Simple_repeat 1 52 0 611 216 18 0 chr12 129767307 129767418 -14515071 - FLAM_A SINE Alu -29 113 1 913 193 0 6 chr12 129767427 129767593 -14514896 - AluJb SINE Alu -11 301 137 1933 111 7 0 chr12 129767648 129767919 -14514570 + AluSx SINE Alu 3 275 -37 236 65 0 0 chr12 129768926 129768957 -14513532 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 529 158 0 150 chr12 129768961 129769215 -14513274 - AluJb SINE Alu -27 285 70 969 59 0 0 chr12 129769543 129769678 -14512811 + L1P LINE L1 5240 5374 -772 185 0 40 0 chr12 129769701 129769726 -14512763 + (TTA)n Simple_repeat Simple_repeat 2 27 0 198 259 56 0 chr12 129821417 129821471 -14461018 + MIR SINE MIR 158 214 -48 1042 148 0 0 chr12 129822033 129822195 -14460294 + FRAM SINE Alu 1 162 -14 503 301 52 0 chr12 129822701 129822854 -14459635 + MIR3 SINE MIR 24 184 -24 553 247 92 4 chr12 129823944 129824183 -14458306 - L2 LINE L2 -247 3066 2807 2158 65 44 3 chr12 129824682 129824975 -14457514 + AluY SINE Alu 1 305 -6 2251 81 3 7 chr12 129825174 129825472 -14457017 + AluSp SINE Alu 1 297 -16 863 167 8 0 chr12 129825521 129825653 -14456836 + FLAM_C SINE Alu 1 133 0 247 160 0 40 chr12 129827321 129827371 -14455118 - L3 LINE CR1 -5 1572 1525 386 200 47 0 chr12 129828046 129828131 -14454358 + MIR3 SINE MIR 81 169 -39 557 237 139 0 chr12 129828206 129828379 -14454110 - MIR SINE MIR -64 198 2 1787 62 90 0 chr12 129828811 129829055 -14453434 + AluSx SINE Alu 44 309 -3 1218 156 193 29 chr12 129829700 129829944 -14452545 + AluSg SINE Alu 5 288 -12 1679 146 55 18 chr12 129830079 129830354 -14452135 + AluJo SINE Alu 20 304 -8 180 0 0 0 chr12 129830531 129830551 -14451938 + (A)n Simple_repeat Simple_repeat 1 20 0 402 273 112 31 chr12 129830929 129831090 -14451399 + MER5B DNA MER1_type 4 177 -1 22 0 0 0 chr12 129831866 129831888 -14450601 + GC_rich Low_complexity Low_complexity 1 22 0 444 279 190 38 chr12 129832330 129832462 -14450027 - L1ME4a LINE L1 -17 6104 5993 2197 83 3 13 chr12 129832462 129832763 -14449726 - AluSp SINE Alu -14 299 2 444 279 190 38 chr12 129832763 129832867 -14449622 - L1ME4a LINE L1 -128 5993 5832 2308 90 0 13 chr12 129832876 129833188 -14449301 - AluSx SINE Alu -4 308 1 2310 68 7 0 chr12 129833201 129833495 -14448994 - AluY SINE Alu -15 296 1 276 30 0 0 chr12 129833803 129833836 -14448653 + (TG)n Simple_repeat Simple_repeat 1 33 0 230 0 33 0 chr12 129833907 129833937 -14448552 + (TG)n Simple_repeat Simple_repeat 1 31 0 2109 87 14 0 chr12 129833937 129834213 -14448276 - AluSp SINE Alu -33 280 1 215 276 58 35 chr12 129834217 129834304 -14448185 + MIR SINE MIR 118 206 -56 180 269 0 19 chr12 129835971 129836023 -14446466 - L2 LINE L2 -8 3264 3214 272 209 134 0 chr12 129839567 129839634 -14442855 - MIR3 SINE MIR -23 185 110 2230 82 3 20 chr12 129839837 129840140 -14442349 + AluSx SINE Alu 1 298 -14 894 175 12 18 chr12 129840152 129840323 -14442166 + AluJb SINE Alu 141 310 -2 940 204 133 0 chr12 129840330 129840570 -14441919 - Charlie1b DNA MER1_type -251 272 1 248 313 12 0 chr12 129840763 129840843 -14441646 - L2 LINE L2 -39 3274 3194 546 252 43 0 chr12 129841550 129841689 -14440800 + L2 LINE L2 3169 3313 0 474 227 38 53 chr12 129841695 129841797 -14440692 + L2 LINE L2 3184 3285 -28 2374 76 0 10 chr12 129841797 129842100 -14440389 - AluSc SINE Alu -9 300 1 474 227 38 53 chr12 129842100 129842129 -14440360 + L2 LINE L2 3285 3313 0 2167 87 23 3 chr12 129842902 129843201 -14439288 - AluSg SINE Alu -5 305 1 258 283 53 35 chr12 129843533 129843646 -14438843 - MIR SINE MIR -119 143 29 270 249 132 0 chr12 129843977 129844148 -14438341 + L1MC/D LINE L1 5700 5908 -213 1003 57 0 0 chr12 129844326 129844450 -14438039 - AluSp/q SINE Alu -15 298 175 27 29 0 0 chr12 129845640 129845674 -14436815 + GC_rich Low_complexity Low_complexity 1 34 0 58 74 0 0 chr12 129845730 129845851 -14436638 + GC_rich Low_complexity Low_complexity 1 121 0 694 282 68 13 chr12 129845974 129846208 -14436281 + MIR SINE MIR 15 261 -1 483 291 0 0 chr12 129846220 129846347 -14436142 + MIR SINE MIR 105 231 -31 466 257 79 7 chr12 129846355 129846507 -14435982 + MIR SINE MIR 98 260 -2 422 233 0 0 chr12 129846597 129846683 -14435806 + L2 LINE L2 3228 3313 0 277 221 0 126 chr12 129847903 129847932 -14434557 - MIR SINE MIR -121 141 110 2153 112 3 0 chr12 129847932 129848227 -14434262 + AluSq SINE Alu 1 296 -17 277 221 0 126 chr12 129848227 129848292 -14434197 - MIR SINE MIR -152 110 59 211 258 15 30 chr12 129848308 129848374 -14434115 + MIR SINE MIR 192 256 -6 2180 91 10 10 chr12 129848479 129848788 -14433701 - AluY SINE Alu -2 309 1 588 229 131 18 chr12 129849109 129849338 -14433151 + MIR SINE MIR 3 261 -1 200 355 58 43 chr12 129850920 129851058 -14431431 + MIR SINE MIR 57 196 -66 180 409 11 0 chr12 129851792 129851885 -14430604 - MIR SINE MIR -3 259 166 203 280 40 0 chr12 129852794 129852844 -14429645 + MIR SINE MIR 104 155 -107 220 146 42 0 chr12 129853708 129853756 -14428733 - MIR SINE MIR -133 129 80 327 321 124 29 chr12 129854686 129854895 -14427594 - L2 LINE L2 -37 3276 3048 236 286 125 0 chr12 129854930 129855042 -14427447 + MER112 DNA MER1_type 135 260 0 326 297 77 51 chr12 129855116 129855289 -14427200 - L2 LINE L2 -479 2835 2655 1746 118 48 11 chr12 129855289 129855561 -14426928 - AluJb SINE Alu -30 282 1 326 297 77 51 chr12 129855561 129855582 -14426907 - L2 LINE L2 -659 2655 2636 243 347 91 40 chr12 129855675 129855874 -14426615 - L2 LINE L2 -120 3152 2944 1105 181 22 58 chr12 129856088 129856269 -14426220 + MER20 DNA MER1_type 1 174 -45 2381 60 20 0 chr12 129856269 129856568 -14425921 + AluY SINE Alu 1 305 -6 1105 181 22 58 chr12 129856568 129856612 -14425877 + MER20 DNA MER1_type 174 218 -1 461 294 98 0 chr12 129856933 129857096 -14425393 - MIR SINE MIR -3 259 81 2026 78 30 4 chr12 129857282 129857553 -14424936 - AluY SINE Alu -33 278 1 311 390 12 0 chr12 129857570 129857739 -14424750 + CT-rich Low_complexity Low_complexity 1 171 0 1887 165 37 0 chr12 129858730 129859027 -14423462 - AluJb SINE Alu -4 308 1 2174 129 0 0 chr12 129859219 129859506 -14422983 + AluSx SINE Alu 1 287 -25 212 328 52 17 chr12 129860223 129860339 -14422150 - L2 LINE L2 -16 3256 3137 306 317 125 54 chr12 129861312 129861703 -14420786 + L2 LINE L2 2852 3270 -2 390 281 41 8 chr12 129862988 129863109 -14419380 - LTR67 LTR ERVL -2 555 431 254 267 27 0 chr12 129863335 129863410 -14419079 - LTR67 LTR ERVL -479 78 2 189 360 20 0 chr12 129863575 129863675 -14418814 - L2 LINE L2 -849 2465 2364 374 318 9 0 chr12 129864865 129864975 -14417514 - MIR SINE MIR -26 236 126 286 241 352 7 chr12 129866977 129867122 -14415367 - MIR SINE MIR -10 252 58 1964 143 0 20 chr12 129867140 129867441 -14415048 + AluJb SINE Alu 1 295 -17 2181 115 3 37 chr12 129867443 129867579 -14414910 + AluSx SINE Alu 1 140 -172 2262 90 0 21 chr12 129867579 129867891 -14414598 + AluSg SINE Alu 1 306 0 2181 115 3 37 chr12 129867891 129868076 -14414413 + AluSx SINE Alu 140 312 0 2323 95 0 0 chr12 129868262 129868557 -14413932 + AluSx SINE Alu 1 295 -17 2017 143 7 3 chr12 129868560 129868854 -14413635 + AluJo SINE Alu 3 297 -15 2224 104 14 3 chr12 129869010 129869307 -14413182 + AluSx SINE Alu 1 300 -12 2396 72 0 7 chr12 129869596 129869888 -14412601 - AluSc SINE Alu -19 290 1 1143 178 147 23 chr12 129870734 129870993 -14411496 + AluJo SINE Alu 2 292 -10 187 308 83 25 chr12 129871186 129871306 -14411183 + MIR SINE MIR 30 156 -106 1028 112 0 14 chr12 129871480 129871623 -14410866 + FLAM_C SINE Alu 3 143 0 1197 189 0 0 chr12 129871623 129871813 -14410676 + AluJo SINE Alu 87 276 -36 877 41 0 0 chr12 129871815 129871912 -14410577 - AluSp/q SINE Alu -17 296 200 2117 107 36 0 chr12 129872341 129872621 -14409868 - AluSx SINE Alu -22 290 1 212 350 41 10 chr12 129873750 129873847 -14408642 - MIR SINE MIR -76 132 33 214 429 0 0 chr12 129874942 129875019 -14407470 + MIR SINE MIR 51 127 -81 1163 178 11 0 chr12 129875765 129875956 -14406533 + AluJb SINE Alu 103 295 -17 2455 79 0 3 chr12 129876076 129876380 -14406109 - AluY SINE Alu -8 303 1 424 368 43 12 chr12 129876392 129876650 -14405839 + L1MC/D LINE L1 5372 5637 -2171 2495 86 3 0 chr12 129876678 129876982 -14405507 + AluSq SINE Alu 1 305 -8 2157 142 0 13 chr12 129878638 129878954 -14403535 - AluSx SINE Alu 0 312 1 2539 76 3 0 chr12 129878957 129879261 -14403228 - AluSp SINE Alu -8 305 1 26 30 0 0 chr12 129879274 129879307 -14403182 + AT_rich Low_complexity Low_complexity 1 33 0 1914 163 3 3 chr12 129879329 129879635 -14402854 - AluJb SINE Alu -6 306 1 347 238 12 0 chr12 129879676 129879756 -14402733 - L1MC/D LINE L1 -2070 5738 5658 2696 35 0 13 chr12 129879801 129880112 -14402377 - AluY SINE Alu -4 307 1 2117 107 0 29 chr12 129880124 129880432 -14402057 - AluSg SINE Alu -11 299 1 1090 96 0 0 chr12 129880432 129880567 -14401922 - AluSq/x SINE Alu -178 135 1 1968 152 0 20 chr12 129880569 129880871 -14401618 - AluSx SINE Alu -16 296 1 1378 89 0 35 chr12 129880879 129881108 -14401381 - AluSg/x SINE Alu 0 308 87 375 143 14 14 chr12 129883216 129883286 -14399203 + AluJb SINE Alu 92 161 -141 475 251 190 0 chr12 129883780 129883959 -14398530 - MIR SINE MIR 0 262 50 1342 136 5 5 chr12 129884266 129884465 -14398024 - AluSg/x SINE Alu -10 302 104 2289 100 3 7 chr12 129884504 129884814 -14397675 - AluSx SINE Alu -3 309 1 1937 144 0 14 chr12 129884837 129885143 -14397346 - AluJb SINE Alu 0 302 1 2476 77 0 0 chr12 129885150 129885450 -14397039 - AluSx SINE Alu -12 300 1 727 117 36 0 chr12 129887953 129888112 -14394377 + AluSg/x SINE Alu 168 330 0 1619 193 44 20 chr12 129888192 129888488 -14394001 + AluJb SINE Alu 1 303 -9 994 139 0 51 chr12 129888566 129888578 -14393911 + FRAM SINE Alu 1 12 -300 2150 121 0 33 chr12 129888578 129888884 -14393605 + AluSx SINE Alu 1 296 -16 994 139 0 51 chr12 129888884 129889029 -14393460 + FRAM SINE Alu 12 142 -34 212 283 141 10 chr12 129889594 129889693 -14392796 + MIR SINE MIR 35 146 -62 239 191 0 21 chr12 129892552 129892599 -14389890 - MER20 DNA MER1_type -173 46 1 581 295 32 0 chr12 129892841 129892997 -14389492 + MIR SINE MIR 50 210 -52 213 253 69 35 chr12 129893036 129893123 -14389366 - MIR SINE MIR -85 177 88 514 252 186 59 chr12 129893609 129894148 -14388341 - HAL1 LINE L1 0 2507 1901 958 244 102 28 chr12 129894263 129894792 -14387697 + L1MC5 LINE L1 7368 7935 -26 2404 89 10 0 chr12 129894849 129895153 -14387336 + AluSq SINE Alu 1 307 -6 298 202 25 42 chr12 129895384 129895503 -14386986 + (CCCCG)n Simple_repeat Simple_repeat 4 120 0 312 197 22 40 chr12 129895507 129895737 -14386752 + C-rich Low_complexity Low_complexity 1 225 0 316 290 11 33 chr12 129895752 129895935 -14386554 + C-rich Low_complexity Low_complexity 2 180 0 200 283 19 19 chr12 129895972 129896078 -14386411 + C-rich Low_complexity Low_complexity 4 109 0 183 42 0 0 chr12 129896416 129896440 -14386049 + (TG)n Simple_repeat Simple_repeat 2 25 0 185 300 80 20 chr12 129896615 129896715 -14385774 + MIR3 SINE MIR 5 110 -98 289 301 11 0 chr12 129896870 129896963 -14385526 - MIR SINE MIR -57 151 58 1905 121 15 4 chr12 129897004 129897276 -14385213 + AluSx SINE Alu 1 275 -37 504 270 105 65 chr12 129898344 129898841 -14383648 + L2 LINE L2 2715 3270 -2 245 309 143 0 chr12 129899607 129899691 -14382798 - L2 LINE L2 -5 3267 3172 1379 69 0 0 chr12 129899691 129899850 -14382639 - AluSc SINE Alu -19 290 132 2669 53 0 0 chr12 129899850 129900151 -14382338 - AluY SINE Alu -10 301 1 257 286 0 45 chr12 129900152 129900264 -14382225 - L2 LINE L2 -93 3220 3114 251 288 55 0 chr12 129900308 129900381 -14382108 - L2 LINE L2 -1 3312 3236 2209 78 7 62 chr12 129900477 129900786 -14381703 + AluSp SINE Alu 2 293 -20 2234 93 35 0 chr12 129900786 129901075 -14381414 + AluSc SINE Alu 1 299 -10 2058 102 3 7 chr12 129901157 129901481 -14381008 + AluY SINE Alu 1 323 0 428 229 89 85 chr12 129901559 129901817 -14380672 - MIR SINE MIR 0 262 4 288 300 93 14 chr12 129902790 129902930 -14379559 + L1MC5 LINE L1 7766 7916 -45 285 258 22 11 chr12 129903478 129903567 -14378922 - L2 LINE L2 -13 3259 3170 2005 146 7 13 chr12 129904450 129904758 -14377731 + AluSx SINE Alu 1 306 -6 2031 155 0 3 chr12 129904767 129905064 -14377425 + AluJo SINE Alu 1 296 -16 192 307 87 87 chr12 129905202 129905433 -14377056 + L2 LINE L2 2950 3180 -92 460 304 56 76 chr12 129906958 129907463 -14375026 + L2 LINE L2 2809 3305 -8 2396 96 0 0 chr12 129907463 129907765 -14374724 + AluY SINE Alu 1 302 -9 301 278 104 35 chr12 129908429 129908573 -14373916 + L1ME4a LINE L1 5968 6121 0 2308 88 3 0 chr12 129908719 129909025 -14373464 + AluSx SINE Alu 1 307 -5 386 303 52 58 chr12 129909060 129909215 -14373274 - L1ME LINE L1 -387 5734 5581 1745 175 3 0 chr12 129909397 129909688 -14372801 - AluJb SINE Alu -14 298 7 333 292 104 10 chr12 129911153 129911345 -14371144 + L1ME4a LINE L1 5644 5853 -268 2227 93 3 0 chr12 129911403 129911703 -14370786 + AluSx SINE Alu 1 301 -11 792 210 0 73 chr12 129911760 129911965 -14370524 - AluJb SINE Alu -3 309 120 21 36 0 0 chr12 129911986 129912014 -14370475 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 129912117 129912137 -14370352 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 534 56 14 0 chr12 129912869 129912940 -14369549 - AluS SINE Alu -230 83 12 277 272 26 18 chr12 129912980 129913094 -14369395 - L1M4 LINE L1 -3563 2583 2469 186 338 50 12 chr12 129914025 129914105 -14368384 + MIR3 SINE MIR 78 160 -48 1404 179 4 4 chr12 129914238 129914489 -14368000 - AluJo SINE Alu -12 300 50 1020 158 0 18 chr12 129914658 129914822 -14367667 + AluJo SINE Alu 1 161 -151 294 262 0 0 chr12 129914822 129914883 -14367606 + FLAM SINE Alu 56 116 -17 230 356 22 0 chr12 129915217 129915307 -14367182 - L2 LINE L2 -6 3307 3216 1935 132 48 0 chr12 129915733 129916028 -14366461 + AluSc SINE Alu 1 309 0 2541 58 0 0 chr12 129916074 129916384 -14366105 + AluY SINE Alu 1 310 -1 1841 181 3 0 chr12 129917437 129917747 -14364742 - AluJo SINE Alu -1 311 1 282 56 0 0 chr12 129917794 129917830 -14364659 + (CA)n Simple_repeat Simple_repeat 1 36 0 291 71 0 0 chr12 129917832 129917874 -14364615 + (TA)n Simple_repeat Simple_repeat 2 43 0 233 325 0 0 chr12 129919737 129919814 -14362675 - MIR SINE MIR -99 163 87 334 196 65 56 chr12 129919814 129919921 -14362568 + MER3 DNA MER1_type 102 209 0 321 131 82 0 chr12 129920974 129921035 -14361454 - MER3 DNA MER1_type -1 208 143 502 329 84 31 chr12 129922387 129922851 -14359638 + L1ME4a LINE L1 5344 5888 -233 2387 67 0 0 chr12 129923901 129924199 -14358290 + AluY SINE Alu 1 298 -13 1295 134 9 5 chr12 129925139 129925355 -14357134 + AluSg/x SINE Alu 93 309 -3 1350 121 5 5 chr12 129925394 129925600 -14356889 + AluSg/x SINE Alu 102 307 -3 785 189 147 5 chr12 129925849 129926039 -14356450 - MER20 DNA MER1_type -2 217 1 454 319 45 8 chr12 129926240 129926435 -14356054 + MIR SINE MIR 1 207 -55 835 269 160 49 chr12 129927048 129927662 -14354827 - HAL1 LINE L1 0 2507 1826 274 211 18 0 chr12 129927733 129927790 -14354699 - HAL1 LINE L1 -904 1603 1546 2278 79 0 20 chr12 129927791 129928096 -14354393 + AluSg SINE Alu 1 299 -11 2108 112 30 0 chr12 129928108 129928411 -14354078 + AluSq SINE Alu 1 312 -1 1039 81 0 0 chr12 129928416 129928552 -14353937 + AluSq/x SINE Alu 1 136 -177 590 168 132 78 chr12 129928561 129928654 -14353835 + MER3 DNA MER1_type 34 121 -88 2090 112 10 3 chr12 129928654 129928949 -14353540 - AluSq SINE Alu -16 297 1 590 168 132 78 chr12 129928949 129929022 -14353467 + MER3 DNA MER1_type 121 209 0 462 314 62 44 chr12 129929443 129929631 -14352858 - MIR SINE MIR -60 202 14 228 143 24 0 chr12 129929619 129929661 -14352828 + L2 LINE L2 3263 3305 -8 * 1535 129 0 79 chr12 129930842 129930996 -14351493 + AluSq SINE Alu 1 125 -188 1900 127 14 7 chr12 129930996 129931287 -14351202 + AluSg SINE Alu 1 293 -17 1535 129 0 79 chr12 129931287 129931411 -14351078 + AluSq SINE Alu 125 257 -56 1515 146 62 31 chr12 129931736 129932024 -14350465 + AluJo SINE Alu 1 297 -15 192 200 0 0 chr12 129932195 129932245 -14350244 + (CAG)n Simple_repeat Simple_repeat 3 52 0 559 163 0 0 chr12 129933280 129933366 -14349123 - AluSg/x SINE Alu -17 293 208 217 190 152 76 chr12 129933425 129933459 -14349030 - MIR SINE MIR -51 211 181 2174 58 38 10 chr12 129933459 129933751 -14348738 + AluY SINE Alu 1 300 -11 217 190 152 76 chr12 129933751 129933795 -14348694 - MIR SINE MIR -81 181 127 2216 96 0 0 chr12 129935529 129935822 -14346667 + AluSx SINE Alu 1 293 -19 1092 178 0 0 chr12 129936823 129937008 -14345481 - AluJb SINE Alu -7 305 121 836 112 0 0 chr12 129937138 129937254 -14345235 - AluSp SINE Alu -64 249 134 592 206 78 128 chr12 129937491 129937557 -14344932 + MER58A DNA MER1_type 2 70 -2350 2019 124 7 0 chr12 129937557 129937863 -14344626 + AluSg SINE Alu 1 308 -2 2220 78 0 0 chr12 129937869 129938180 -14344309 + AluY SINE Alu 1 311 0 592 206 78 128 chr12 129938180 129938324 -14344165 + MER58A DNA MER1_type 75 209 -15 2125 118 43 24 chr12 129938646 129938975 -14343514 - MER1B DNA MER1_type 0 337 3 2012 113 0 3 chr12 129939485 129939796 -14342693 - AluSx SINE Alu 0 310 1 625 328 48 18 chr12 129940083 129940312 -14342177 - MIR SINE MIR -26 236 1 297 250 80 0 chr12 129940426 129940538 -14341951 + L1ME4a LINE L1 5774 5894 -227 2319 94 0 0 chr12 129940556 129940865 -14341624 + AluSx SINE Alu 1 309 -3 614 121 0 0 chr12 129940937 129941020 -14341469 - AluJ/FLAM SINE Alu -228 84 2 462 207 0 24 chr12 129941196 129941278 -14341211 - MER30 DNA MER1_type 0 230 151 216 330 77 0 chr12 129941382 129941473 -14341016 - MIR SINE MIR -164 98 1 297 250 80 0 chr12 129941586 129941698 -14340791 + L1ME4a LINE L1 5774 5894 -227 2210 107 0 0 chr12 129941716 129942014 -14340475 + AluSx SINE Alu 1 298 -14 2061 103 31 0 chr12 129942014 129942303 -14340186 + AluSq SINE Alu 1 299 -14 184 320 115 0 chr12 129942489 129942611 -14339878 + MIR3 SINE MIR 13 148 -60 23 0 0 0 chr12 129945219 129945242 -14337247 + AT_rich Low_complexity Low_complexity 1 23 0 535 134 41 10 chr12 129945242 129945339 -14337150 - FLAM_C SINE Alu -18 125 26 421 190 60 0 chr12 129945352 129945452 -14337037 - MIR SINE MIR -126 136 31 234 179 236 98 chr12 129945514 129945580 -14336909 - MER103 DNA DNA -25 141 85 2027 109 0 3 chr12 129945580 129945886 -14336603 + AluSx SINE Alu 1 305 0 234 179 236 98 chr12 129945886 129945941 -14336548 - MER103 DNA DNA -81 85 2 329 335 34 34 chr12 129946893 129947069 -14335420 - MIR SINE MIR -59 203 28 186 133 0 0 chr12 129948660 129948690 -14333799 + (TG)n Simple_repeat Simple_repeat 1 30 0 325 257 63 32 chr12 129949788 129949970 -14332519 + MIR3 SINE MIR 3 186 -65 1961 86 0 80 chr12 129950068 129950381 -14332108 - AluSg SINE Alu -22 288 1 22 70 0 0 chr12 129950403 129950446 -14332043 + AT_rich Low_complexity Low_complexity 1 43 0 2002 137 7 0 chr12 129950526 129950825 -14331664 - AluJo SINE Alu -9 303 3 2320 92 0 6 chr12 129950845 129951159 -14331330 - AluSp SINE Alu -1 312 1 695 256 114 5 chr12 129951218 129951429 -14331060 - MIR SINE MIR -16 246 13 412 219 181 100 chr12 129954601 129954811 -14327678 - MIR SINE MIR -28 234 8 293 286 31 10 chr12 129954833 129954931 -14327558 + L2 LINE L2 3134 3233 -39 2277 53 30 26 chr12 129955645 129955947 -14326542 + AluY SINE Alu 1 303 -8 275 293 43 69 chr12 129957911 129958099 -14324390 - MIR SINE MIR -12 250 68 208 324 29 29 chr12 129958870 129958972 -14323517 - MIR SINE MIR -71 137 36 317 307 90 30 chr12 129959189 129959355 -14323134 + MIR SINE MIR 20 195 -67 317 137 0 0 chr12 129959651 129959702 -14322787 + AluJo SINE Alu 85 135 -167 1953 177 0 0 chr12 129959702 129960001 -14322488 + AluJb SINE Alu 1 299 -13 414 265 108 38 chr12 129961988 129962173 -14320316 + MIR SINE MIR 63 260 -2 437 231 19 9 chr12 129963388 129963496 -14318993 + L2 LINE L2 3162 3270 -43 1759 157 41 14 chr12 129964507 129964801 -14317688 - AluJo SINE Alu -6 306 5 2038 138 10 7 chr12 129965799 129966089 -14316400 - AluSx SINE Alu -21 291 1 2083 130 0 33 chr12 129966606 129966913 -14315576 + AluSx SINE Alu 7 303 -9 222 252 143 42 chr12 129967090 129967209 -14315280 + MIR3 SINE MIR 2 132 -76 879 168 68 43 chr12 129968798 129968959 -14313530 - AluJb SINE Alu -15 297 133 2443 87 0 0 chr12 129968960 129969258 -14313231 - AluSg1 SINE Alu -11 298 1 1794 176 11 0 chr12 129969275 129969585 -14312904 - AluJo SINE Alu 0 313 1 1249 97 12 6 chr12 129969731 129969896 -14312593 + AluSg/x SINE Alu 138 303 -9 2478 62 0 0 chr12 129969905 129970195 -14312294 + AluY SINE Alu 10 299 -12 1938 144 0 14 chr12 129970202 129970508 -14311981 + AluJb SINE Alu 1 302 0 341 253 153 15 chr12 129970510 129970531 -14311958 + L1MC4a LINE L1 5798 5815 -1993 2271 91 3 41 chr12 129970531 129970849 -14311640 + AluSp SINE Alu 1 306 -7 341 253 153 15 chr12 129970849 129971029 -14311460 + L1MC4a LINE L1 5815 6027 -1781 2322 65 65 3 chr12 129972486 129972779 -14309710 + AluY SINE Alu 1 311 0 311 222 0 37 chr12 129972793 129972874 -14309615 + L1MC4a LINE L1 5793 5870 -1938 21 0 0 0 chr12 129972880 129972901 -14309588 + AT_rich Low_complexity Low_complexity 1 21 0 2023 108 0 0 chr12 129972982 129973241 -14309248 - AluSg SINE Alu -18 292 34 1243 75 7 0 chr12 129973999 129974146 -14308343 + AluSp SINE Alu 1 148 -165 215 228 34 64 chr12 129974170 129974264 -14308225 - MIR SINE MIR -92 116 20 2038 112 66 3 chr12 129974351 129974637 -14307852 + AluSg SINE Alu 1 304 -6 2212 119 0 3 chr12 129974656 129974949 -14307540 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr12 129975137 129975165 -14307324 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr12 129975199 129975227 -14307262 + AT_rich Low_complexity Low_complexity 1 28 0 1487 120 5 14 chr12 129975416 129975633 -14306856 - AluJo SINE Alu -94 218 4 2062 114 31 0 chr12 129975984 129976273 -14306216 - AluSx SINE Alu -14 298 1 2148 100 45 3 chr12 129976527 129976817 -14305672 - AluSx SINE Alu -10 302 1 2399 90 7 7 chr12 129977980 129978280 -14304209 + AluSc SINE Alu 1 300 -9 2111 114 3 7 chr12 129978333 129978623 -14303866 + AluSx SINE Alu 21 309 -3 309 272 102 7 chr12 129978838 129978985 -14303504 - L1ME4a LINE L1 0 6121 5961 2131 120 17 10 chr12 129980234 129980535 -14301954 - AluSx SINE Alu -9 303 1 683 159 0 24 chr12 129980535 129980742 -14301747 - AluJb SINE Alu -19 293 1 504 270 105 65 chr12 129981362 129981859 -14300630 + L2 LINE L2 2715 3270 -2 254 277 157 0 chr12 129982625 129982708 -14299781 - L2 LINE L2 -5 3267 3172 1379 69 0 0 chr12 129982708 129982867 -14299622 - AluSc SINE Alu -19 290 132 2669 53 0 0 chr12 129982867 129983168 -14299321 - AluY SINE Alu -10 301 1 257 286 0 45 chr12 129983169 129983281 -14299208 - L2 LINE L2 -93 3220 3114 310 247 55 0 chr12 129983326 129983399 -14299090 - L2 LINE L2 -1 3312 3236 2209 78 7 62 chr12 129983495 129983804 -14298685 + AluSp SINE Alu 2 293 -20 2225 94 35 0 chr12 129983804 129984092 -14298397 + AluSc SINE Alu 1 298 -11 2696 35 0 13 chr12 129984176 129984487 -14298002 + AluY SINE Alu 1 307 -4 347 238 12 0 chr12 129984532 129984612 -14297877 + L1MC/D LINE L1 5658 5738 -2070 1914 163 3 3 chr12 129984653 129984959 -14297530 + AluJb SINE Alu 1 306 -6 26 30 0 0 chr12 129984981 129985014 -14297475 + AT_rich Low_complexity Low_complexity 1 33 0 2543 71 13 0 chr12 129985027 129985336 -14297153 + AluSp SINE Alu 1 313 0 2412 97 0 10 chr12 129985400 129985711 -14296778 + AluSp SINE Alu 1 308 -5 2049 132 6 16 chr12 129985947 129986258 -14296231 + AluJb SINE Alu 1 308 -4 21 0 0 0 chr12 129987157 129987178 -14295311 + AT_rich Low_complexity Low_complexity 1 21 0 666 120 30 0 chr12 129987188 129987288 -14295201 - U6 snRNA snRNA -4 103 1 1813 178 0 3 chr12 129987297 129987595 -14294894 - AluJb SINE Alu -15 297 1 2267 104 7 3 chr12 129987600 129987889 -14294600 - AluSx SINE Alu -20 292 3 213 39 0 0 chr12 129987890 129987916 -14294573 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2051 107 44 0 chr12 129987916 129988187 -14294302 - AluSx SINE Alu -29 283 1 180 256 0 0 chr12 129989310 129989353 -14293136 + L2 LINE L2 3161 3203 -69 668 265 44 10 chr12 129989356 129989560 -14292929 - LTR16C LTR ERVL -27 464 254 2180 85 65 10 chr12 129989578 129989872 -14292617 + AluSx SINE Alu 1 310 -2 658 214 0 0 chr12 129989884 129990001 -14292488 + FLAM_C SINE Alu 7 123 -20 183 80 0 0 chr12 129990014 129990039 -14292450 + (TA)n Simple_repeat Simple_repeat 2 26 0 2293 101 0 41 chr12 129990065 129990382 -14292107 + AluSx SINE Alu 1 304 -8 1769 175 7 32 chr12 129990401 129990419 -14292070 - AluJo SINE Alu -12 300 283 279 114 0 0 chr12 129990419 129990463 -14292026 + (TG)n Simple_repeat Simple_repeat 1 44 0 1769 175 7 32 chr12 129990463 129990752 -14291737 - AluJo SINE Alu -29 283 1 449 294 70 7 chr12 129990754 129990897 -14291592 - LTR16C LTR ERVL -251 240 89 2502 76 0 3 chr12 129990922 129991226 -14291263 + AluY SINE Alu 1 303 -8 2157 142 0 13 chr12 129991229 129991545 -14290944 + AluSx SINE Alu 1 312 0 283 214 41 92 chr12 129991897 129991995 -14290494 - MIR SINE MIR -80 182 90 2137 111 17 7 chr12 129992020 129992317 -14290172 + AluSx SINE Alu 1 300 -12 272 333 0 0 chr12 129992658 129992727 -14289762 + L2 LINE L2 3205 3273 -40 795 224 94 5 chr12 129993933 129994134 -14288355 - MIR SINE MIR -37 225 7 189 304 18 0 chr12 129994410 129994466 -14288023 + L2 LINE L2 3256 3312 -1 415 241 76 7 chr12 129994506 129994651 -14287838 + L1ME3A LINE L1 6016 6170 0 263 298 131 0 chr12 129994876 129994960 -14287529 - MIR SINE MIR -21 241 147 1950 127 4 0 chr12 129994973 129995241 -14287248 - AluSg SINE Alu -20 290 22 1673 174 31 3 chr12 129995560 129995847 -14286642 - AluJo SINE Alu -7 305 11 1883 124 9 84 chr12 129995899 129996222 -14286267 - AluSx SINE Alu -13 299 1 2291 103 6 10 chr12 129996259 129996570 -14285919 - AluSg SINE Alu 0 310 1 2425 104 0 0 chr12 129997138 129997445 -14285044 + AluSg SINE Alu 1 307 -3 1199 244 67 75 chr12 129997457 129997808 -14284681 - L1MA9 LINE L1 -21 6168 5937 2152 139 7 0 chr12 129997808 129998117 -14284372 + AluSx SINE Alu 1 311 -1 1199 244 67 75 chr12 129998117 129998311 -14284178 - L1MA9 LINE L1 -252 5937 5743 267 258 34 34 chr12 129998312 129998401 -14284088 - MIR SINE MIR -71 191 103 2146 152 3 0 chr12 129998486 129998795 -14283694 - AluSx SINE Alu -2 310 1 494 286 19 25 chr12 129998827 129998966 -14283523 + Charlie8 DNA MER1_type 4 143 -198 1648 81 0 14 chr12 129998966 129999177 -14283312 - AluSg/x SINE Alu -8 302 95 494 286 19 25 chr12 129999177 129999198 -14283291 + Charlie8 DNA MER1_type 143 163 -178 204 347 97 37 chr12 129999499 129999767 -14282722 + L2 LINE L2 2978 3261 -11 309 344 31 8 chr12 129999881 130000009 -14282480 + MIR SINE MIR 14 144 -118 2170 102 4 0 chr12 130000141 130000444 -14282045 - AluSx SINE Alu 0 312 9 2162 127 3 0 chr12 130000453 130000752 -14281737 - AluSx SINE Alu -12 300 1 21 0 0 0 chr12 130000752 130000773 -14281716 + AT_rich Low_complexity Low_complexity 1 21 0 2300 107 0 3 chr12 130000775 130001066 -14281423 - AluSx SINE Alu -22 290 1 2162 124 0 0 chr12 130002819 130003133 -14279356 - AluSx SINE Alu 0 314 1 586 274 102 15 chr12 130003133 130003330 -14279159 - MIR SINE MIR -1 261 48 423 0 0 0 chr12 130003446 130003493 -14278996 + (TG)n Simple_repeat Simple_repeat 1 47 0 1028 204 22 55 chr12 130003867 130004141 -14278348 - L1MEc LINE L1 -3566 2649 2385 1562 234 47 23 chr12 130004654 130004936 -14277553 - L1MEc LINE L1 -3954 2442 2168 1558 134 9 126 chr12 130004936 130005108 -14277381 - AluJo SINE Alu 0 302 112 2349 105 0 10 chr12 130005108 130005413 -14277076 - AluSc SINE Alu -7 302 1 1558 134 9 126 chr12 130005413 130005441 -14277048 - AluJo SINE Alu -190 112 82 2226 110 40 0 chr12 130005441 130005741 -14276748 - AluSx SINE Alu 0 312 1 1558 134 9 126 chr12 130005741 130005881 -14276608 - AluJo SINE Alu -220 82 1 1562 234 47 23 chr12 130005881 130006112 -14276377 - L1MEc LINE L1 -4228 2168 1917 2634 52 0 3 chr12 130006175 130006480 -14276009 - AluY SINE Alu -7 304 1 26 0 0 0 chr12 130007108 130007134 -14275355 + AT_rich Low_complexity Low_complexity 1 26 0 2173 128 3 13 chr12 130007134 130007313 -14275176 - AluSg1 SINE Alu 0 309 133 2709 36 0 7 chr12 130007313 130007621 -14274868 - AluY SINE Alu -5 306 1 2173 128 3 13 chr12 130007621 130007753 -14274736 - AluSg1 SINE Alu -176 133 1 196 186 0 23 chr12 130008230 130008273 -14274216 - L2 LINE L2 -216 3056 3015 1723 183 7 10 chr12 130008278 130008578 -14273911 - AluJo SINE Alu -13 299 1 203 304 22 11 chr12 130008772 130008864 -14273625 - L2 LINE L2 -255 3017 2925 2262 105 17 0 chr12 130009088 130009382 -14273107 - AluSx SINE Alu -13 299 1 216 264 110 55 chr12 130009888 130010051 -14272438 + L2 LINE L2 2356 2527 -787 378 263 175 7 chr12 130011838 130011975 -14270514 - MIR SINE MIR -80 182 23 428 276 194 25 chr12 130011983 130012179 -14270310 - MER102a DNA MER1_type -5 325 97 2129 122 0 29 chr12 130012213 130012388 -14270101 - AluSx SINE Alu -8 304 140 2392 78 3 3 chr12 130012388 130012684 -14269805 - AluSg SINE Alu -14 296 1 2129 122 0 29 chr12 130012684 130012820 -14269669 - AluSx SINE Alu -172 140 2 1448 137 0 0 chr12 130014598 130014795 -14267694 + AluSg/x SINE Alu 72 268 -44 1768 87 16 32 chr12 130014902 130015154 -14267335 - AluSp SINE Alu -65 248 1 2371 101 0 0 chr12 130016044 130016342 -14266147 + AluSx SINE Alu 1 298 -14 268 251 47 99 chr12 130016863 130016911 -14265578 - L1MC4 LINE L1 -121 7921 7872 2334 106 0 28 chr12 130016911 130017233 -14265256 + AluSp SINE Alu 1 313 0 2261 135 0 0 chr12 130017243 130017554 -14264935 + AluSx SINE Alu 1 311 -1 268 251 47 99 chr12 130017554 130017665 -14264824 - L1MC4 LINE L1 -179 7863 7760 2248 92 37 0 chr12 130018361 130018656 -14263833 + AluSp SINE Alu 1 306 -7 1351 179 0 5 chr12 130018819 130019043 -14263446 + AluJb SINE Alu 3 225 -87 862 217 22 57 chr12 130019091 130019321 -14263168 + MIR SINE MIR 31 252 -10 2051 112 0 0 chr12 130019364 130019623 -14262866 - AluSx SINE Alu -52 260 2 216 213 0 21 chr12 130020030 130020077 -14262412 + MIR SINE MIR 36 81 -181 290 305 251 5 chr12 130020585 130020772 -14261717 + MIR SINE MIR 11 243 -19 381 237 16 129 chr12 130021633 130021819 -14260670 + MIR SINE MIR 20 184 -78 275 174 0 94 chr12 130023872 130024010 -14258479 + C-rich Low_complexity Low_complexity 5 129 0 1919 111 80 0 chr12 130025085 130025373 -14257116 - AluSx SINE Alu -1 311 1 1199 59 0 0 chr12 130025373 130025508 -14256981 - AluSq/x SINE Alu -178 135 1 459 318 65 0 chr12 130025699 130025853 -14256636 - MIR SINE MIR -72 190 27 1542 186 74 18 chr12 130026171 130026510 -14255979 - MLT1A1 LTR MaLR -7 358 1 406 266 105 7 chr12 130026592 130026735 -14255754 + MIR SINE MIR 73 229 -33 845 125 88 0 chr12 130026914 130027050 -14255439 + AluSp/q SINE Alu 161 308 -5 2161 110 34 3 chr12 130027052 130027344 -14255145 + AluSq SINE Alu 1 301 -12 1573 157 48 43 chr12 130027349 130027743 -14254746 + L1MB3 LINE L1 5788 6183 0 1262 14 0 0 chr12 130028108 130028252 -14254237 + U4 snRNA snRNA 1 144 -1 462 120 80 0 chr12 130028529 130028604 -14253885 - AluY SINE Alu -20 291 211 1981 90 28 10 chr12 130028737 130029025 -14253464 - AluSg SINE Alu -17 293 1 1256 14 0 0 chr12 130029442 130029586 -14252903 + U4 snRNA snRNA 1 144 -1 2203 91 14 3 chr12 130029939 130030235 -14252254 - AluSq SINE Alu -7 306 8 607 130 20 0 chr12 130030631 130030731 -14251758 + AluSg/x SINE Alu 209 310 -2 2273 76 0 60 chr12 130030731 130031048 -14251441 + AluSg SINE Alu 1 298 -12 289 225 0 0 chr12 130031049 130031120 -14251369 + LTR37B LTR ERV1 14 84 -384 671 221 97 0 chr12 130031121 130031275 -14251214 - MER5A DNA MER1_type -11 178 10 1739 141 15 77 chr12 130031379 130031522 -14250967 + AluJb SINE Alu 1 151 -161 1707 201 0 16 chr12 130031522 130031835 -14250654 - AluJb SINE Alu -2 310 3 1739 141 15 77 chr12 130031835 130032018 -14250471 + AluJb SINE Alu 151 307 -5 282 68 0 0 chr12 130032018 130032062 -14250427 - L1MB5 LINE L1 -9 6165 6122 351 287 85 87 chr12 130032156 130032348 -14250141 - L1ME4a LINE L1 0 6121 5930 2566 57 0 7 chr12 130032348 130032648 -14249841 + AluY SINE Alu 1 298 -13 351 287 85 87 chr12 130032648 130032898 -14249591 - L1ME4a LINE L1 -191 5930 5654 1730 114 4 0 chr12 130032898 130033151 -14249338 - AluSq SINE Alu 0 310 57 351 287 85 87 chr12 130033151 130033282 -14249207 - L1ME4a LINE L1 -467 5654 5524 2398 96 0 0 chr12 130033312 130033605 -14248884 - AluSg SINE Alu -17 293 1 737 250 13 21 chr12 130034224 130034460 -14248029 - AluSg1 SINE Alu -74 235 2 209 350 98 20 chr12 130034496 130034699 -14247790 + L2 LINE L2 2844 3062 -251 1719 193 10 3 chr12 130034840 130035140 -14247349 - AluSx SINE Alu -10 302 1 1241 185 137 0 chr12 130035177 130035404 -14247085 - AluJo SINE Alu -15 297 40 2020 154 0 0 chr12 130035418 130035710 -14246779 - AluSx SINE Alu -14 298 7 2002 134 7 10 chr12 130035731 130036030 -14246459 - AluJb SINE Alu -8 304 7 2237 112 16 19 chr12 130036150 130036324 -14246165 - AluSx SINE Alu 0 312 138 2442 57 20 7 chr12 130036324 130036623 -14245866 - AluSp SINE Alu -10 303 1 2237 112 16 19 chr12 130036623 130036761 -14245728 - AluSx SINE Alu -174 138 1 412 225 194 0 chr12 130036845 130036974 -14245515 - L2 LINE L2 -2 3311 3158 2337 84 0 0 chr12 130036994 130037278 -14245211 - AluSc SINE Alu -25 284 1 2445 63 3 27 chr12 130037281 130037613 -14244876 - AluY SINE Alu 0 325 1 2053 126 31 0 chr12 130037667 130037961 -14244528 - AluSg SINE Alu -3 307 5 2247 80 3 45 chr12 130038021 130038333 -14244156 - AluSp SINE Alu -13 300 2 2275 92 7 16 chr12 130038749 130039055 -14243434 + AluSq SINE Alu 1 303 -10 792 152 0 23 chr12 130039064 130039196 -14243293 + FLAM_C SINE Alu 1 129 -4 2261 112 6 6 chr12 130039331 130039643 -14242846 - AluSq SINE Alu -1 312 1 2051 122 14 0 chr12 130039718 130040012 -14242477 - AluSx SINE Alu -14 298 1 2250 127 0 3 chr12 130040393 130040701 -14241788 - AluSx SINE Alu -5 307 1 2359 84 10 22 chr12 130040717 130041028 -14241461 - AluSp SINE Alu -6 307 1 687 197 0 0 chr12 130041047 130041169 -14241320 - FLAM_C SINE Alu -17 126 5 1769 96 0 4 chr12 130041181 130041411 -14241078 - AluSg/x SINE Alu -1 309 81 2024 122 13 23 chr12 130041479 130041782 -14240707 - AluJb SINE Alu -4 308 9 2455 82 0 0 chr12 130041923 130042206 -14240283 + AluSg SINE Alu 1 286 -24 285 51 0 0 chr12 130042206 130042245 -14240244 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2455 82 0 0 chr12 130042245 130042264 -14240225 + AluSg SINE Alu 285 303 -7 237 132 0 0 chr12 130042298 130042336 -14240153 + (A)n Simple_repeat Simple_repeat 1 38 0 258 214 0 0 chr12 130042475 130042559 -14239930 + A-rich Low_complexity Low_complexity 1 84 0 291 136 0 0 chr12 130042972 130043016 -14239473 - FRAM SINE Alu -46 120 77 1386 75 0 0 chr12 130043030 130043203 -14239286 + AluSp SINE Alu 137 309 -4 1804 132 64 4 chr12 130043307 130043588 -14238901 + AluJb SINE Alu 1 298 -14 2286 78 3 0 chr12 130043607 130043923 -14238566 + AluSg SINE Alu 1 317 0 1129 151 11 0 chr12 130044050 130044229 -14238260 + AluSq SINE Alu 131 311 -2 1367 189 102 0 chr12 130044264 130044529 -14237960 + AluJo SINE Alu 1 292 -20 612 73 0 0 chr12 130045173 130045200 -14237289 + (GGAA)n Simple_repeat Simple_repeat 1 109 0 612 73 0 0 chr12 130045200 130045282 -14237207 + (GGAA)n Simple_repeat Simple_repeat 1 82 0 2299 113 0 0 chr12 130045315 130045626 -14236863 + AluY SINE Alu 1 311 0 292 235 0 130 chr12 130045970 130045989 -14236500 + MIR SINE MIR 50 70 -192 1928 148 3 3 chr12 130045989 130046287 -14236202 + AluJb SINE Alu 1 298 -14 292 235 0 130 chr12 130046287 130046382 -14236107 + MIR SINE MIR 70 149 -113 373 273 18 79 chr12 130046389 130046554 -14235935 + MIR SINE MIR 62 216 -46 341 274 152 10 chr12 130046669 130046866 -14235623 - MIR SINE MIR -2 260 36 2289 112 0 0 chr12 130047157 130047453 -14235036 + AluSx SINE Alu 1 296 -16 2235 117 16 0 chr12 130047464 130047772 -14234717 + AluSp SINE Alu 1 313 0 1095 178 0 11 chr12 130047772 130047952 -14234537 + AluSg/x SINE Alu 134 311 -1 2233 124 7 0 chr12 130047960 130048266 -14234223 + AluSx SINE Alu 3 310 -2 2163 103 0 4 chr12 130048284 130048565 -14233924 + AluSx SINE Alu 14 293 -19 381 296 26 20 chr12 130048586 130048738 -14233751 + L2 LINE L2 2919 3071 -201 2335 88 10 0 chr12 130048840 130049136 -14233353 + AluY SINE Alu 1 299 -12 455 259 63 46 chr12 130049159 130049333 -14233156 - MER5B DNA MER1_type -1 177 1 325 303 63 42 chr12 130049335 130049477 -14233012 - MIR SINE MIR -93 169 25 1703 203 0 13 chr12 130050054 130050365 -14232124 + AluJb SINE Alu 1 307 -5 390 219 9 41 chr12 130050509 130050634 -14231855 + FLAM_A SINE Alu 21 119 -14 438 280 57 73 chr12 130050709 130050917 -14231572 - L1ME4a LINE L1 -58 6063 5853 1810 174 0 22 chr12 130050917 130051234 -14231255 - AluJb SINE Alu -2 310 1 438 280 57 73 chr12 130051234 130051478 -14231011 - L1ME4a LINE L1 -268 5853 5618 866 128 8 23 chr12 130051685 130051818 -14230671 - FLAM_C SINE Alu -12 131 1 2638 53 0 0 chr12 130051821 130052123 -14230366 - AluY SINE Alu -9 302 1 194 0 0 37 chr12 130052204 130052231 -14230258 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2255 106 0 0 chr12 130052234 130052518 -14229971 - AluSc SINE Alu -25 284 1 183 42 0 0 chr12 130052552 130052576 -14229913 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1919 148 3 26 chr12 130052608 130052912 -14229577 + AluSx SINE Alu 1 297 -15 278 286 107 9 chr12 130052916 130053028 -14229461 + MIR SINE MIR 49 171 -91 2287 118 0 7 chr12 130053067 130053372 -14229117 + AluSx SINE Alu 3 305 -7 272 285 112 50 chr12 130053511 130053753 -14228736 + L2 LINE L2 2449 2705 -609 2030 128 7 3 chr12 130053756 130054038 -14228451 - AluSx SINE Alu -24 288 6 2078 107 0 4 chr12 130054047 130054349 -14228140 - AluSx SINE Alu 0 316 16 8227 94 11 131 chr12 130054370 130055946 -14226543 - SVA Other Other 0 1386 1 308 159 0 0 chr12 130055985 130056029 -14226460 + Alu SINE Alu 1 44 -257 516 253 156 56 chr12 130056062 130056331 -14226158 + L2 LINE L2 3017 3312 -1 190 328 16 0 chr12 130056378 130056442 -14226047 - MIR3 SINE MIR -129 79 15 2546 68 3 13 chr12 130056513 130056824 -14225665 - AluY SINE Alu -3 308 1 183 42 0 0 chr12 130056825 130056849 -14225640 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1378 115 0 11 chr12 130056855 130057038 -14225451 - AluSg/x SINE Alu -31 279 99 2116 135 0 0 chr12 130057317 130057605 -14224884 + AluSx SINE Alu 9 296 -16 1045 210 81 15 chr12 130057617 130057888 -14224601 + AluJb SINE Alu 1 289 -13 329 0 0 24 chr12 130057895 130057937 -14224552 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 662 314 68 4 chr12 130057941 130058177 -14224312 - MIR SINE MIR 0 262 12 2035 144 7 3 chr12 130058243 130058548 -14223941 + AluSx SINE Alu 1 306 -6 2112 116 0 20 chr12 130058607 130058899 -14223590 + AluSx SINE Alu 1 286 -26 2305 98 13 3 chr12 130059037 130059342 -14223147 - AluSc SINE Alu -1 308 1 351 250 0 0 chr12 130059351 130059423 -14223066 - L2 LINE L2 0 3313 3242 334 310 88 12 chr12 130059541 130059712 -14222777 - MIR SINE MIR -30 232 49 23 54 0 0 chr12 130059740 130059777 -14222712 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr12 130060029 130060052 -14222437 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1507 136 178 4 chr12 130060137 130060401 -14222088 + AluJb SINE Alu 1 310 -2 242 307 60 17 chr12 130061549 130061752 -14220737 + MIR SINE MIR 5 256 -6 2269 102 3 25 chr12 130061869 130062184 -14220305 - AluSq SINE Alu -5 308 1 1853 115 4 0 chr12 130062223 130062475 -14220014 - AluSx SINE Alu -20 292 40 351 250 0 0 chr12 130062755 130062827 -14219662 + L2 LINE L2 3242 3313 0 2517 70 0 0 chr12 130062836 130063137 -14219352 + AluY SINE Alu 1 301 -10 438 300 141 14 chr12 130063244 130063464 -14219025 + MIR SINE MIR 13 260 -2 1952 162 0 0 chr12 130063573 130063881 -14218608 + AluSx SINE Alu 1 308 -4 594 168 174 20 chr12 130064252 130064401 -14218088 + MER53 DNA DNA 1 172 -17 2211 128 3 0 chr12 130064402 130064707 -14217782 - AluSq SINE Alu -7 306 1 300 282 57 32 chr12 130064856 130064980 -14217509 + L1ME4a LINE L1 5993 6119 -2 2217 137 0 0 chr12 130065081 130065387 -14217102 - AluSx SINE Alu -6 306 1 210 37 0 0 chr12 130065464 130065491 -14216998 + (TG)n Simple_repeat Simple_repeat 2 28 0 527 211 19 90 chr12 130065762 130065851 -14216638 - L2 LINE L2 -7 3306 3231 1871 142 52 7 chr12 130065851 130066139 -14216350 + AluSx SINE Alu 1 301 -11 527 211 19 90 chr12 130066139 130066205 -14216284 - L2 LINE L2 -82 3231 3162 1822 178 0 7 chr12 130066205 130066509 -14215980 + AluJo SINE Alu 1 302 -10 637 160 34 0 chr12 130066521 130066640 -14215849 + MIR SINE MIR 70 192 -70 1382 149 4 47 chr12 130067368 130067603 -14214886 + AluJb SINE Alu 5 229 -83 225 0 0 0 chr12 130067603 130067628 -14214861 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 351 243 94 77 chr12 130068271 130068452 -14214037 + L1ME4a LINE L1 5924 6107 -14 338 256 89 11 chr12 130068436 130068526 -14213963 - L1MCa LINE L1 -4335 2091 1995 * 305 254 0 0 chr12 130068510 130068573 -14213916 - L1MC4 LINE L1 -1339 6703 6641 * 2065 92 42 11 chr12 130068573 130068856 -14213633 - AluY SINE Alu -19 292 1 1090 96 0 0 chr12 130068856 130068991 -14213498 - AluSq/x SINE Alu -177 135 1 1968 152 0 20 chr12 130068993 130069295 -14213194 - AluSx SINE Alu -16 296 1 1442 158 16 8 chr12 130069303 130069575 -14212914 - AluSg SINE Alu 0 308 35 1239 230 182 19 chr12 130069695 130070234 -14212255 - L1ME3A LINE L1 -111 6059 5433 1394 216 68 72 chr12 130070263 130070638 -14211851 - L1MC5 LINE L1 -49 7912 7537 2392 84 7 0 chr12 130070638 130070934 -14211555 - AluSq SINE Alu -15 298 1 1394 216 68 72 chr12 130070934 130071039 -14211450 - L1MC5 LINE L1 -424 7537 7433 2300 111 3 0 chr12 130071039 130071346 -14211143 - AluSx SINE Alu -4 308 1 1394 216 68 72 chr12 130071346 130071479 -14211010 - L1MC5 LINE L1 -528 7433 7300 2057 136 3 14 chr12 130072783 130073078 -14209411 - AluSx SINE Alu -20 292 1 2475 60 20 0 chr12 130073816 130074118 -14208371 - AluY SINE Alu -3 308 1 388 274 0 0 chr12 130074230 130074325 -14208164 - MIR SINE MIR -60 148 54 1338 178 33 47 chr12 130074354 130074463 -14208026 + AluJo SINE Alu 29 138 -174 2362 93 0 7 chr12 130074463 130074763 -14207726 + AluSx SINE Alu 1 298 -14 1338 178 33 47 chr12 130074763 130074928 -14207561 + AluJo SINE Alu 138 299 -13 839 282 49 38 chr12 130076592 130076936 -14205553 - L2 LINE L2 0 3313 2966 194 211 0 19 chr12 130077617 130077669 -14204820 + L2 LINE L2 3204 3254 -18 925 277 126 56 chr12 130078095 130078633 -14203856 + MLT1K LTR MaLR 2 577 -11 1382 149 4 47 chr12 130079744 130079979 -14202510 + AluJb SINE Alu 5 229 -83 225 0 0 0 chr12 130079979 130080004 -14202485 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 351 243 94 77 chr12 130080647 130080828 -14201661 + L1ME4a LINE L1 5924 6107 -14 338 256 89 11 chr12 130080812 130080902 -14201587 - L1MCa LINE L1 -4335 2091 1995 * 305 254 0 0 chr12 130080886 130080949 -14201540 - L1MC4 LINE L1 -1339 6703 6641 * 2196 109 3 3 chr12 130080949 130081242 -14201247 - AluSx SINE Alu -19 293 1 345 273 13 0 chr12 130081249 130081326 -14201163 - MER5A DNA MER1_type -3 186 109 950 131 0 15 chr12 130081327 130081464 -14201025 - AluJb SINE Alu -20 292 158 567 198 26 9 chr12 130081464 130081580 -14200909 - MER5A DNA MER1_type -71 118 1 207 196 0 0 chr12 130081589 130081635 -14200854 + A-rich Low_complexity Low_complexity 1 46 0 401 123 49 0 chr12 130081774 130081855 -14200634 - AluS SINE Alu -227 86 2 180 0 0 0 chr12 130081993 130082013 -14200476 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2274 113 0 0 chr12 130082015 130082308 -14200181 - AluSg SINE Alu -17 293 1 22 35 0 0 chr12 130082387 130082416 -14200073 + AT_rich Low_complexity Low_complexity 1 29 0 191 156 0 0 chr12 130082430 130082462 -14200027 - MER5B DNA MER1_type -61 117 86 231 202 22 112 chr12 130082566 130082625 -14199864 - MIR3 SINE MIR -26 182 132 1900 161 0 16 chr12 130082625 130082935 -14199554 + AluJo SINE Alu 1 305 -7 231 202 22 112 chr12 130082935 130082964 -14199525 - MIR3 SINE MIR -76 132 102 1906 165 0 22 chr12 130083054 130083370 -14199119 - AluJb SINE Alu -3 309 1 2421 140 113 0 chr12 130083370 130083805 -14198684 + LTR64 LTR ERVK 36 519 -39 2120 128 7 0 chr12 130083805 130084103 -14198386 - AluSx SINE Alu -12 300 1 2272 40 36 18 chr12 130084126 130084426 -14198063 - AluY SINE Alu 0 307 3 23 54 0 0 chr12 130084428 130084465 -14198024 + AT_rich Low_complexity Low_complexity 1 37 0 440 218 18 92 chr12 130084465 130084749 -14197740 - AluSq SINE Alu -24 289 27 2225 92 46 0 chr12 130085172 130085456 -14197033 - AluY SINE Alu -14 297 1 2363 101 0 0 chr12 130085578 130085885 -14196604 - AluSx SINE Alu -5 307 1 207 196 0 0 chr12 130086128 130086174 -14196315 + T-rich Low_complexity Low_complexity 1 46 0 567 198 26 9 chr12 130086183 130086299 -14196190 + MER5A DNA MER1_type 1 118 -71 950 131 0 15 chr12 130086299 130086436 -14196053 + AluJb SINE Alu 158 292 -20 362 260 13 0 chr12 130086437 130086514 -14195975 + MER5A DNA MER1_type 109 186 -3 2414 85 0 10 chr12 130086521 130086828 -14195661 + AluSq SINE Alu 1 304 -9 456 233 93 0 chr12 130087134 130087263 -14195226 + MIR SINE MIR 50 190 -72 2260 113 7 0 chr12 130087470 130087771 -14194718 + AluSg SINE Alu 1 303 -7 297 0 0 0 chr12 130087849 130087882 -14194607 + (CA)n Simple_repeat Simple_repeat 1 33 0 2382 87 3 3 chr12 130088254 130088552 -14193937 - AluSp SINE Alu -15 298 1 301 250 16 0 chr12 130088790 130088854 -14193635 + MER58A DNA MER1_type 2 66 -41 2330 104 3 0 chr12 130088856 130089163 -14193326 + AluSg SINE Alu 1 308 -2 2467 65 3 0 chr12 130089169 130089483 -14193006 + AluY SINE Alu 1 315 0 1696 123 8 8 chr12 130089492 130089735 -14192754 + AluSq SINE Alu 6 248 -65 2072 118 52 0 chr12 130089914 130090203 -14192286 + AluSq SINE Alu 1 304 -9 2058 120 40 10 chr12 130090208 130090507 -14191982 + AluSx SINE Alu 1 308 -4 24 32 0 0 chr12 130090513 130090544 -14191945 + AT_rich Low_complexity Low_complexity 1 31 0 1838 110 40 30 chr12 130090554 130090854 -14191635 + AluSg SINE Alu 1 303 -7 453 273 11 57 chr12 130091035 130091211 -14191278 + MIR SINE MIR 91 258 -4 255 256 26 13 chr12 130091666 130091744 -14190745 + (TCCA)n Simple_repeat Simple_repeat 2 80 0 424 288 164 56 chr12 130091744 130092067 -14190422 - L2 LINE L2 0 3272 2915 607 174 9 0 chr12 130092293 130092408 -14190081 + AluSg/x SINE Alu 194 309 0 678 224 16 13 chr12 130092410 130092619 -14189870 - L1ME3 LINE L1 -294 5868 5663 374 305 0 9 chr12 130092806 130092911 -14189578 + MIR SINE MIR 87 190 -72 1395 140 20 143 chr12 130092911 130093262 -14189227 + AluYb8 SINE Alu 1 308 0 934 188 54 83 chr12 130093262 130093357 -14189132 + L1MB4 LINE L1 5666 5762 -418 1982 115 51 14 chr12 130093357 130093652 -14188837 + AluSx SINE Alu 1 306 -6 1282 140 156 0 chr12 130093660 130093910 -14188579 + AluJb SINE Alu 3 291 -11 1621 69 190 0 chr12 130093917 130094164 -14188325 + AluSq SINE Alu 1 294 -9 934 188 54 83 chr12 130094164 130094180 -14188309 + L1MB4 LINE L1 5775 5790 -390 2207 105 34 3 chr12 130094180 130094476 -14188013 + AluSq SINE Alu 1 305 -8 934 188 54 83 chr12 130094476 130094718 -14187771 + L1MB4 LINE L1 5790 6026 -154 1394 75 151 33 chr12 130095655 130095867 -14186622 + AluY SINE Alu 50 286 -25 28 0 0 0 chr12 130095867 130095895 -14186594 + AT_rich Low_complexity Low_complexity 1 28 0 2017 112 11 4 chr12 130095923 130096225 -14186264 - AluSc SINE Alu 0 304 1 2448 83 0 13 chr12 130096242 130096419 -14186070 - AluY SINE Alu -2 309 136 2288 83 20 7 chr12 130096419 130096719 -14185770 - AluY SINE Alu -7 304 1 2448 83 0 13 chr12 130096719 130096854 -14185635 - AluY SINE Alu -175 136 1 1386 172 72 20 chr12 130097336 130097586 -14184903 + THE1B LTR MaLR 102 364 0 2055 128 38 0 chr12 130097586 130097906 -14184583 + THE1-int LTR MaLR 889 1220 -360 5493 71 45 3 chr12 130097906 130098202 -14184287 - LTR13 LTR ERVK 0 1007 725 204 40 0 0 chr12 130098202 130098227 -14184262 + (GA)n Simple_repeat Simple_repeat 2 26 0 5493 71 45 3 chr12 130098227 130098677 -14183812 - LTR13 LTR ERVK -282 725 229 371 212 108 22 chr12 130099100 130099234 -14183255 + MIR SINE MIR 61 204 -58 245 357 6 12 chr12 130100049 130100217 -14182272 + (TG)n Simple_repeat Simple_repeat 1 167 0 443 197 7 39 chr12 130100313 130100449 -14182040 + MIR SINE MIR 49 138 -70 1014 183 17 71 chr12 130100859 130101099 -14181390 - AluJo SINE Alu -64 248 22 1937 125 40 26 chr12 130101157 130101460 -14181029 - AluSx SINE Alu -5 307 1 21 0 0 0 chr12 130101467 130101488 -14181001 + AT_rich Low_complexity Low_complexity 1 21 0 186 261 87 29 chr12 130101932 130102001 -14180488 + MIR SINE MIR 77 149 -59 2173 99 7 0 chr12 130102589 130102871 -14179618 - AluSx SINE Alu -17 295 12 2199 100 17 7 chr12 130102896 130103196 -14179293 - AluY SINE Alu -8 303 1 21 0 0 0 chr12 130103675 130103696 -14178793 + GC_rich Low_complexity Low_complexity 1 21 0 3273 143 54 13 chr12 130203755 130203801 -14078688 + L1MB5 LINE L1 5486 5529 -645 1416 227 5 42 chr12 130203801 130203870 -14078619 - MLT1A1 LTR MaLR 0 365 295 2096 141 0 0 chr12 130203870 130204176 -14078313 + AluSx SINE Alu 1 306 -6 1416 227 5 42 chr12 130204176 130204485 -14078004 - MLT1A1 LTR MaLR -70 295 1 3273 143 54 13 chr12 130204485 130205033 -14077456 + L1MB5 LINE L1 5529 6104 -70 604 215 256 18 chr12 130205033 130205256 -14077233 + MLT1G1 LTR MaLR 313 588 -7 594 273 79 63 chr12 130205587 130205788 -14076701 + L2 LINE L2 2933 3143 -129 2246 89 4 0 chr12 130205788 130206093 -14076396 - AluSq SINE Alu 0 306 1 594 273 79 63 chr12 130206093 130206205 -14076284 + L2 LINE L2 3143 3252 -20 1921 146 3 36 chr12 130206490 130206798 -14075691 + AluJb SINE Alu 1 298 -14 2201 98 0 7 chr12 130206805 130207092 -14075397 + AluSg SINE Alu 1 285 -25 492 255 7 21 chr12 130207116 130207257 -14075232 + MIR SINE MIR 13 151 -111 1972 141 0 17 chr12 130207258 130207555 -14074934 + AluJo SINE Alu 1 292 -20 456 307 153 0 chr12 130207584 130207760 -14074729 - MIR SINE MIR -58 204 2 191 246 70 35 chr12 130207817 130207874 -14074615 + MIR SINE MIR 77 135 -73 905 110 0 0 chr12 130208538 130208656 -14073833 + FLAM_C SINE Alu 1 118 -25 618 236 231 5 chr12 130208679 130208887 -14073602 - MIR SINE MIR 0 262 8 309 301 62 0 chr12 130208961 130209074 -14073415 + MIR SINE MIR 81 200 -62 2213 121 7 3 chr12 130209098 130209404 -14073085 - AluJo SINE Alu -5 307 1 427 153 71 0 chr12 130209429 130209514 -14072975 - HY4 scRNA scRNA 0 93 3 386 323 39 7 chr12 130210071 130210226 -14072263 + L1MC/D LINE L1 5542 5701 -2107 1212 135 6 0 chr12 130210232 130210410 -14072079 - AluSg/x SINE Alu 0 310 132 2348 106 3 0 chr12 130210410 130210712 -14071777 - AluSp SINE Alu -10 303 1 2135 141 3 0 chr12 130210714 130211011 -14071478 - AluSq SINE Alu -15 298 1 847 161 40 55 chr12 130211023 130211222 -14071267 + LTR54 LTR ERV1 3 198 -312 2195 128 0 0 chr12 130211226 130211523 -14070966 - AluSx SINE Alu -15 297 1 632 211 0 34 chr12 130211527 130211674 -14070815 + LTR54 LTR ERV1 264 405 -105 2530 43 40 3 chr12 130211678 130211978 -14070511 - AluY SINE Alu 0 311 1 1454 171 68 29 chr12 130212042 130212199 -14070290 - AluJo SINE Alu -21 291 117 2192 134 0 3 chr12 130212199 130212512 -14069977 - AluSx SINE Alu 0 312 1 1454 171 68 29 chr12 130212512 130212634 -14069855 - AluJo SINE Alu -195 117 1 1875 175 3 0 chr12 130212701 130212987 -14069502 + AluJb SINE Alu 1 287 -25 2457 63 13 7 chr12 130213605 130213907 -14068582 + AluY SINE Alu 1 304 -7 1646 167 78 11 chr12 130213918 130214200 -14068289 + AluJo SINE Alu 3 303 -9 2269 108 3 0 chr12 130214329 130214616 -14067873 + AluSq SINE Alu 2 289 -24 24 0 0 0 chr12 130217343 130217367 -14065122 + AT_rich Low_complexity Low_complexity 1 24 0 1962 135 0 17 chr12 130218341 130218637 -14063852 - AluSx SINE Alu -21 291 1 614 67 0 0 chr12 130218648 130218723 -14063766 - Alu SINE Alu -12 300 226 891 163 208 0 chr12 130218732 130218934 -14063555 + MSTA LTR MaLR 185 428 0 837 224 30 6 chr12 130218955 130219120 -14063369 + FAM SINE Alu 1 169 -6 2050 120 0 23 chr12 130219151 130219473 -14063016 + AluSq SINE Alu 1 313 0 2398 59 0 40 chr12 130219477 130219781 -14062708 + AluY SINE Alu 1 292 -19 326 310 116 30 chr12 130219783 130219885 -14062604 - HAL1 LINE L1 -343 2164 2072 2352 110 3 3 chr12 130219885 130220195 -14062294 - AluSq SINE Alu -3 310 1 326 310 116 30 chr12 130220195 130220225 -14062264 - HAL1 LINE L1 -435 2072 2046 1730 154 13 39 chr12 130220225 130220536 -14061953 + AluJb SINE Alu 1 303 -9 326 310 116 30 chr12 130220536 130220634 -14061855 - HAL1 LINE L1 -461 2046 1913 733 363 38 89 chr12 130220653 130220967 -14061522 - AluSx SINE Alu -3 299 2 1273 122 11 5 chr12 130220968 130221156 -14061333 + AluSg/x SINE Alu 100 288 -22 2239 76 52 3 chr12 130221164 130221476 -14061013 + AluSp SINE Alu 1 326 0 514 273 24 69 chr12 130221540 130221774 -14060715 - L2 LINE L2 -197 3075 2858 260 263 171 0 chr12 130222316 130222392 -14060097 - L2 LINE L2 -22 3291 3203 2501 60 7 0 chr12 130222740 130223040 -14059449 - AluY SINE Alu -9 302 1 1464 196 148 74 chr12 130223226 130223793 -14058696 - MER21B LTR ERV1 -109 754 146 872 180 6 12 chr12 130223821 130223993 -14058496 - FRAM SINE Alu -5 171 1 268 200 59 47 chr12 130223994 130224079 -14058410 + MER34 LTR ERV1 452 537 -5 762 181 0 88 chr12 130224122 130224282 -14058207 + FAM SINE Alu 4 149 -36 2425 78 0 0 chr12 130224307 130224602 -14057887 - AluY SINE Alu -16 295 1 676 219 16 44 chr12 130224618 130224801 -14057688 + L1ME4a LINE L1 4648 4825 -1321 1145 108 11 17 chr12 130224813 130224989 -14057500 + AluJo SINE Alu 37 211 -101 256 167 0 0 chr12 130224989 130225037 -14057452 + FAM SINE Alu 125 172 -3 2197 132 0 0 chr12 130225037 130225332 -14057157 + AluSg SINE Alu 1 295 -15 3146 225 127 25 chr12 130225358 130226366 -14056123 - L2 LINE L2 -775 2539 1429 267 255 11 53 chr12 130226616 130226710 -14055779 + L1ME4a LINE L1 5691 5780 -341 2139 101 20 20 chr12 130226717 130227015 -14055474 - AluSx SINE Alu -14 298 1 842 218 11 17 chr12 130227022 130227196 -14055293 + AluJo SINE Alu 116 288 -24 428 263 173 37 chr12 130227197 130227227 -14055262 + L1ME4a LINE L1 5845 5870 -251 2300 83 0 0 chr12 130227227 130227505 -14054984 - AluSg1 SINE Alu -7 302 25 428 263 173 37 chr12 130227505 130227533 -14054956 + L1ME4a LINE L1 5870 5893 -228 1855 173 3 3 chr12 130227533 130227833 -14054656 + AluJo SINE Alu 1 300 -12 428 263 173 37 chr12 130227833 130228016 -14054473 + L1ME4a LINE L1 5893 6120 -1 1828 153 10 20 chr12 130228439 130228739 -14053750 - AluJo SINE Alu -13 299 3 2505 64 3 0 chr12 130228943 130229241 -14053248 - AluY SINE Alu -12 299 1 1832 77 0 32 chr12 130229246 130229492 -14052997 - AluY SINE Alu 0 311 74 500 228 18 41 chr12 130229495 130229666 -14052823 - LTR4 LTR ERV1 -40 556 390 648 309 56 72 chr12 130230123 130230594 -14051895 + L2 LINE L2 2792 3270 -2 2203 108 7 3 chr12 130230595 130230900 -14051589 + AluSp SINE Alu 2 307 -6 292 253 53 0 chr12 130231018 130231093 -14051396 + L2 LINE L2 3192 3270 -2 1935 186 90 39 chr12 130231101 130231612 -14050877 + L2 LINE L2 2160 2696 -618 752 249 82 44 chr12 130231610 130231710 -14050779 + L2 LINE L2 3009 3104 -209 * 2249 94 3 13 chr12 130231710 130232008 -14050481 - AluSx SINE Alu -17 295 1 752 249 82 44 chr12 130232008 130232200 -14050289 + L2 LINE L2 3104 3312 -1 1199 167 9 53 chr12 130232583 130232810 -14049679 + MER20 DNA MER1_type 3 219 0 857 286 40 8 chr12 130232837 130233085 -14049404 - MIR SINE MIR -5 257 2 768 278 86 0 chr12 130233953 130234162 -14048327 + MIR SINE MIR 28 254 -8 232 242 77 126 chr12 130234169 130234275 -14048214 - MIR SINE MIR -27 235 140 2013 99 4 0 chr12 130234275 130234538 -14047951 + AluSx SINE Alu 48 311 -1 232 242 77 126 chr12 130234538 130234613 -14047876 - MIR SINE MIR -122 140 63 433 164 6 73 chr12 130235082 130235195 -14047294 - MER113 DNA MER1_type? -290 231 133 1914 108 97 0 chr12 130235195 130235473 -14047016 + AluSx SINE Alu 1 305 -7 433 164 6 73 chr12 130235473 130235536 -14046953 - MER113 DNA MER1_type? -388 133 67 2459 66 6 25 chr12 130235541 130235858 -14046631 - AluY SINE Alu 0 311 1 25 31 0 0 chr12 130235907 130235939 -14046550 + AT_rich Low_complexity Low_complexity 1 32 0 2171 89 52 0 chr12 130236221 130236512 -14045977 - AluSp SINE Alu -7 306 1 857 165 0 0 chr12 130236559 130236692 -14045797 - FLAM_C SINE Alu 0 133 1 283 267 249 34 chr12 130236890 130237075 -14045414 - MIR SINE MIR -10 252 34 253 115 96 19 chr12 130237445 130237497 -14044992 - MER45 DNA AcHobo 0 1581 1526 23 0 0 0 chr12 130238674 130238697 -14043792 + AT_rich Low_complexity Low_complexity 1 23 0 2260 108 3 0 chr12 130241424 130241711 -14040778 - AluSq SINE Alu -24 289 2 1640 167 78 11 chr12 130241840 130242122 -14040367 - AluJo SINE Alu -9 303 3 2446 63 13 7 chr12 130242133 130242435 -14040054 - AluY SINE Alu -7 304 1 1866 175 3 0 chr12 130243052 130243338 -14039151 - AluJb SINE Alu -25 287 1 1444 171 68 29 chr12 130243405 130243527 -14038962 + AluJo SINE Alu 1 117 -195 2187 134 0 3 chr12 130243527 130243840 -14038649 + AluSx SINE Alu 1 312 0 1444 171 68 29 chr12 130243840 130243997 -14038492 + AluJo SINE Alu 117 291 -21 2474 40 40 16 chr12 130244061 130244365 -14038124 + AluYa5 SINE Alu 1 311 0 2245 113 7 3 chr12 130244576 130244878 -14037611 - AluSg SINE Alu -7 303 1 1532 123 0 9 chr12 130244944 130245164 -14037325 + AluSg/x SINE Alu 90 307 -3 537 219 69 93 chr12 130246088 130246335 -14036154 - MER102b DNA MER1_type -2 339 99 977 107 15 0 chr12 130246339 130246470 -14036019 - FLAM_C SINE Alu 0 133 1 452 153 71 0 chr12 130246496 130246581 -14035908 - HY4 scRNA scRNA 0 93 3 370 297 52 19 chr12 130247136 130247291 -14035198 + L1MC/D LINE L1 5542 5701 -2107 1208 135 6 0 chr12 130247297 130247475 -14035014 - AluSg/x SINE Alu 0 312 134 2338 106 3 0 chr12 130247475 130247777 -14034712 - AluSp SINE Alu -10 303 1 2128 141 3 0 chr12 130247779 130248076 -14034413 - AluSq SINE Alu -15 298 1 1179 168 168 76 chr12 130248088 130248291 -14034198 + LTR54 LTR ERV1 3 186 -324 2163 125 3 0 chr12 130248291 130248587 -14033902 - AluSx SINE Alu -15 297 1 1179 168 168 76 chr12 130248587 130248741 -14033748 + LTR54 LTR ERV1 186 402 -108 2332 88 7 0 chr12 130248741 130249037 -14033452 - AluSx SINE Alu 0 312 15 1179 168 168 76 chr12 130249037 130249072 -14033417 + LTR54 LTR ERV1 402 432 -78 2201 98 10 3 chr12 130249200 130249497 -14032992 - AluSx SINE Alu -13 299 1 323 140 0 0 chr12 130249561 130249611 -14032878 - Alu SINE Alu -13 287 238 238 206 33 11 chr12 130249616 130249708 -14032781 + (TTTAA)n Simple_repeat Simple_repeat 1 94 0 277 172 17 0 chr12 130249745 130249803 -14032686 - FLAM SINE Alu -2 131 73 1593 160 37 24 chr12 130249804 130250006 -14032483 - AluSx SINE Alu -8 304 106 2345 112 0 0 chr12 130250006 130250309 -14032180 - AluSc SINE Alu -6 303 1 2087 133 27 3 chr12 130250314 130250615 -14031874 - AluSq SINE Alu -5 308 1 1593 160 37 24 chr12 130250615 130250700 -14031789 - AluSx SINE Alu -209 103 7 2368 104 0 7 chr12 130250772 130251080 -14031409 - AluSq SINE Alu -7 306 1 342 312 188 11 chr12 130251426 130251612 -14030877 - L2 LINE L2 -2989 325 107 468 122 11 22 chr12 130251617 130251707 -14030782 - AluS SINE Alu 0 309 221 1369 179 54 0 chr12 130252044 130252324 -14030165 - AluSx SINE Alu -17 295 1 729 210 0 40 chr12 130252328 130252479 -14030010 + LTR54 LTR ERV1 264 409 -101 2482 97 0 0 chr12 130252479 130252790 -14029699 - AluSx SINE Alu 0 312 2 729 210 0 40 chr12 130252790 130252814 -14029675 + LTR54 LTR ERV1 409 432 -78 307 216 148 11 chr12 130252855 130252943 -14029546 + L1MC/D LINE L1 5709 5808 -2000 2081 90 4 4 chr12 130252943 130253211 -14029278 - AluSc SINE Alu -13 296 29 598 158 0 0 chr12 130253267 130253362 -14029127 + AluSg/x SINE Alu 215 309 0 2357 85 0 3 chr12 130253691 130253986 -14028503 + AluSc SINE Alu 3 296 -13 1008 110 0 0 chr12 130254180 130254307 -14028182 + AluJb SINE Alu 1 127 -185 192 97 0 0 chr12 130254711 130254742 -14027747 + (TC)n Simple_repeat Simple_repeat 2 32 0 725 142 0 0 chr12 130254770 130254876 -14027613 + FLAM_A SINE Alu 21 126 -16 448 243 16 138 chr12 130255141 130255259 -14027230 + MIR SINE MIR 4 78 -184 1832 150 13 30 chr12 130255259 130255559 -14026930 - AluJo SINE Alu -17 295 1 448 243 16 138 chr12 130255559 130255687 -14026802 + MIR SINE MIR 78 220 -42 354 239 0 80 chr12 130255858 130255934 -14026555 + L1ME4a LINE L1 5541 5607 -514 2243 80 45 3 chr12 130255934 130256222 -14026267 + AluSg SINE Alu 1 300 -10 354 239 0 80 chr12 130256222 130256258 -14026231 + L1ME4a LINE L1 5607 5644 -477 488 227 13 129 chr12 130256276 130256450 -14026039 - MIR SINE MIR -1 261 117 796 163 0 15 chr12 130256450 130256585 -14025904 + FLAM_A SINE Alu 1 133 0 488 227 13 129 chr12 130256585 130256635 -14025854 - MIR SINE MIR -145 117 63 434 291 73 41 chr12 130256738 130256875 -14025614 + L1ME4a LINE L1 5676 5825 -296 2300 82 4 0 chr12 130256875 130257185 -14025304 + AluY SINE Alu 1 311 0 434 291 73 41 chr12 130257185 130257266 -14025223 + L1ME4a LINE L1 5825 5902 -219 2128 105 14 0 chr12 130257266 130257560 -14024929 + AluSq SINE Alu 1 298 -15 324 307 78 18 chr12 130258267 130258433 -14024056 - MER5A DNA MER1_type -10 179 4 2066 124 3 0 chr12 130259041 130259359 -14023130 + AluSx SINE Alu 1 319 0 1958 130 50 0 chr12 130259549 130259826 -14022663 - AluSx SINE Alu -20 292 2 451 53 0 0 chr12 130259826 130259883 -14022606 - AluSg/x SINE Alu -173 136 80 1791 187 14 0 chr12 130259905 130260194 -14022295 - AluJb SINE Alu -19 293 1 640 174 91 0 chr12 130260353 130260474 -14022015 - AluSq/x SINE Alu -180 133 2 2280 89 0 7 chr12 130260486 130260778 -14021711 - AluSg SINE Alu 0 310 21 2277 110 0 7 chr12 130260849 130261157 -14021332 - AluSg SINE Alu -4 306 1 209 313 30 0 chr12 130261231 130261298 -14021191 + MIR SINE MIR 71 139 -123 713 177 0 0 chr12 130261298 130261411 -14021078 - FLAM_A SINE Alu -14 128 16 834 169 149 6 chr12 130261462 130261696 -14020793 + LTR54 LTR ERV1 1 329 -181 841 184 0 87 chr12 130261696 130261903 -14020586 - AluJo SINE Alu -3 309 121 371 138 0 0 chr12 130261950 130262008 -14020481 - AluSg/x SINE Alu -159 141 84 1079 150 0 90 chr12 130262008 130262241 -14020248 - AluJo SINE Alu -92 220 9 2557 44 7 0 chr12 130262466 130262763 -14019726 + AluY SINE Alu 1 299 -12 365 140 0 0 chr12 130263070 130263127 -14019362 - Alu SINE Alu 0 300 244 25 0 0 0 chr12 130263135 130263160 -14019329 + AT_rich Low_complexity Low_complexity 1 25 0 983 147 117 93 chr12 130263194 130263388 -14019101 + MER33 DNA MER1_type 18 206 -2379 2214 121 0 0 chr12 130263388 130263725 -14018764 - AluSx SINE Alu 0 312 1 983 147 117 93 chr12 130263725 130263794 -14018695 + MER33 DNA MER1_type 206 291 -2294 2407 71 0 0 chr12 130263794 130264076 -14018413 - AluY SINE Alu -14 297 16 983 147 117 93 chr12 130264076 130264111 -14018378 + MER33 DNA MER1_type 291 324 0 667 204 28 57 chr12 130264111 130264292 -14018197 - L1ME3 LINE L1 -110 6052 5875 1995 143 0 7 chr12 130264292 130264601 -14017888 - AluJb SINE Alu 0 307 1 667 204 28 57 chr12 130264601 130264629 -14017860 - L1ME3 LINE L1 -287 5875 5848 1898 164 7 3 chr12 130264629 130264927 -14017562 + AluJo SINE Alu 1 299 -13 2452 76 16 0 chr12 130265041 130265344 -14017145 + AluY SINE Alu 1 308 -3 758 253 66 21 chr12 130265548 130265789 -14016700 - MIR SINE MIR -9 253 2 332 267 50 40 chr12 130266046 130266147 -14016342 - MIR3 SINE MIR -30 178 77 21 0 0 0 chr12 130266592 130266613 -14015876 + AT_rich Low_complexity Low_complexity 1 21 0 2005 117 39 26 chr12 130266620 130266928 -14015561 + AluSx SINE Alu 1 312 0 1008 183 17 71 chr12 130266980 130267220 -14015269 + AluJo SINE Alu 22 248 -64 414 0 0 0 chr12 130267359 130267405 -14015084 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 246 224 0 0 chr12 130267435 130267484 -14015005 + L2 LINE L2 3224 3272 0 2335 95 0 3 chr12 130267539 130267834 -14014655 + AluSg SINE Alu 1 294 -16 1238 134 0 0 chr12 130267834 130268005 -14014484 + AluSq SINE Alu 134 304 -9 1797 164 4 0 chr12 130268017 130268298 -14014191 + AluJo SINE Alu 14 295 -17 2111 131 3 0 chr12 130268336 130268627 -14013862 - AluSq SINE Alu -21 292 1 1046 186 0 16 chr12 130268936 130269110 -14013379 - AluJo SINE Alu -8 304 132 1816 177 0 19 chr12 130269110 130269283 -14013206 - AluSx SINE Alu -8 304 138 2343 106 0 0 chr12 130269283 130269586 -14012903 - AluSx SINE Alu -9 303 1 1816 177 0 19 chr12 130269586 130269722 -14012767 - AluSx SINE Alu -174 138 1 1046 186 0 16 chr12 130269722 130269735 -14012754 - AluJo SINE Alu -180 132 120 322 245 52 39 chr12 130269735 130269890 -14012599 + Charlie7 DNA MER1_type 2455 2611 -1 593 185 44 42 chr12 130269931 130270125 -14012364 + L1MB5 LINE L1 4928 5166 -980 1960 138 10 3 chr12 130270125 130270441 -14012048 + AluJo SINE Alu 1 312 0 593 185 44 42 chr12 130270441 130270474 -14012015 + L1MB5 LINE L1 5166 5197 -949 2244 121 7 3 chr12 130270474 130270781 -14011708 + AluSx SINE Alu 1 308 -4 1942 114 10 62 chr12 130270782 130271090 -14011399 + AluJb SINE Alu 1 292 -20 3303 168 68 80 chr12 130271105 130271685 -14010804 + L1MB5 LINE L1 5320 5888 -286 1940 147 3 7 chr12 130271685 130271978 -14010511 + AluJb SINE Alu 21 312 0 3303 168 68 80 chr12 130271978 130272231 -14010258 + L1MB5 LINE L1 5888 6143 -31 343 313 45 85 chr12 130272320 130272544 -14009945 - L1MC4a LINE L1 -1758 6050 5836 353 235 24 0 chr12 130272847 130272932 -14009557 + MIR SINE MIR 73 159 -103 222 157 39 0 chr12 130273361 130273412 -14009077 + G-rich Low_complexity Low_complexity 2 54 0 188 182 23 0 chr12 130273441 130273485 -14009004 + G-rich Low_complexity Low_complexity 6 50 0 947 161 0 11 chr12 130273553 130273911 -14008578 + GA-rich Low_complexity Low_complexity 1 353 0 1957 99 0 0 chr12 130273911 130274154 -14008335 + AluSq SINE Alu 1 243 -70 2308 102 0 22 chr12 130274171 130274484 -14008005 - AluSx SINE Alu -6 306 1 189 0 0 0 chr12 130274497 130274518 -14007971 + (A)n Simple_repeat Simple_repeat 1 21 0 438 171 9 18 chr12 130274524 130274635 -14007854 + GA-rich Low_complexity Low_complexity 4 113 0 612 206 0 23 chr12 130274649 130274824 -14007665 + GA-rich Low_complexity Low_complexity 4 174 0 469 277 92 4 chr12 130274824 130275079 -14007410 + L2 LINE L2 2780 3059 -254 308 270 56 0 chr12 130275312 130275401 -14007088 + MIR SINE MIR 49 142 -66 1416 133 93 75 chr12 130275403 130275567 -14006922 - AluSx SINE Alu 0 310 150 2135 108 0 33 chr12 130275567 130275873 -14006616 - AluSp SINE Alu -17 296 1 2350 90 0 0 chr12 130275873 130276163 -14006326 - AluSc SINE Alu -19 290 1 1416 133 93 75 chr12 130276163 130276302 -14006187 - AluSx SINE Alu -159 151 1 24 32 0 0 chr12 130276302 130276333 -14006156 + AT_rich Low_complexity Low_complexity 1 31 0 266 143 0 0 chr12 130276333 130276375 -14006114 - AluJb SINE Alu -177 125 84 991 165 0 123 chr12 130276375 130276581 -14005908 - AluJo SINE Alu -94 218 44 2210 100 4 0 chr12 130276581 130276889 -14005600 + AluSx SINE Alu 1 309 0 991 165 0 123 chr12 130276889 130276924 -14005565 - AluJo SINE Alu -268 44 6 2378 80 3 7 chr12 130276957 130277256 -14005233 + AluY SINE Alu 1 298 -13 641 230 52 39 chr12 130277395 130277623 -14004866 - MIR SINE MIR -12 250 15 979 205 0 0 chr12 130277812 130277983 -14004506 - AluJ SINE Alu -8 304 134 2094 130 27 0 chr12 130277983 130278283 -14004206 - AluSx SINE Alu -4 308 1 660 188 16 16 chr12 130279061 130279189 -14003300 + MIR SINE MIR 65 192 -70 601 99 0 0 chr12 130279293 130279374 -14003115 - AluJ SINE Alu -179 133 53 210 91 0 0 chr12 130279422 130279455 -14003034 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2074 134 10 0 chr12 130279469 130279768 -14002721 - AluSg SINE Alu -8 302 1 383 286 0 34 chr12 130279768 130279887 -14002602 - MIR SINE MIR -72 190 76 1291 211 55 97 chr12 130280088 130280271 -14002218 + L1ME3 LINE L1 5687 5876 -286 2162 119 6 19 chr12 130280271 130280583 -14001906 - AluSx SINE Alu 0 312 5 1291 211 55 97 chr12 130280583 130280771 -14001718 + L1ME3 LINE L1 5876 6034 -128 2341 104 0 0 chr12 130280771 130281070 -14001419 - AluSx SINE Alu -13 299 1 1291 211 55 97 chr12 130281070 130281190 -14001299 + L1ME3 LINE L1 6034 6158 -4 858 147 0 7 chr12 130281213 130281349 -14001140 - FLAM_C SINE Alu -8 135 1 267 211 28 0 chr12 130281361 130281432 -14001057 - MER113 DNA MER1_type? -405 116 44 1031 123 31 67 chr12 130281540 130281735 -14000754 - MER53 DNA DNA -1 188 1 667 277 79 10 chr12 130282526 130282728 -13999761 - MIR SINE MIR 0 262 47 2314 118 0 0 chr12 130282967 130283273 -13999216 + AluSx SINE Alu 1 306 -6 1396 203 19 12 chr12 130283437 130283758 -13998731 - L1ME1 LINE L1 -5 6161 5839 245 311 212 23 chr12 130283795 130283927 -13998562 + MIR SINE MIR 105 261 -1 * 344 219 0 27 chr12 130283916 130283989 -13998500 + L2 LINE L2 3172 3242 -71 471 261 9 9 chr12 130284017 130284132 -13998357 - MIR SINE MIR -124 138 24 1988 138 3 10 chr12 130284132 130284423 -13998066 - AluJb SINE Alu -18 294 6 1729 174 76 0 chr12 130284435 130284723 -13997766 - AluSx SINE Alu -2 310 1 396 211 56 87 chr12 130284897 130285058 -13997431 - MIR SINE MIR -1 261 106 2455 61 0 0 chr12 130285106 130285400 -13997089 + AluY SINE Alu 1 294 -17 1133 183 28 36 chr12 130285403 130285561 -13996928 - L1MA4 LINE L1 -15 6285 6128 2371 90 0 13 chr12 130285561 130285872 -13996617 - AluSx SINE Alu -5 307 1 1133 183 28 36 chr12 130285872 130285964 -13996525 - L1MA4 LINE L1 -172 6128 6037 288 247 10 52 chr12 130286590 130286687 -13995802 - MIR SINE MIR -148 114 22 386 259 111 52 chr12 130286887 130286903 -13995586 - MIR SINE MIR -15 247 233 1822 143 37 4 chr12 130286903 130287175 -13995314 - AluJb SINE Alu -31 281 1 386 259 111 52 chr12 130287175 130287273 -13995216 - MIR SINE MIR -29 233 142 2451 88 0 0 chr12 130287273 130287570 -13994919 - AluSq SINE Alu -16 297 1 386 259 111 52 chr12 130287570 130287678 -13994811 - MIR SINE MIR -120 142 7 347 252 151 42 chr12 130287943 130288062 -13994427 + MIR SINE MIR 21 152 -110 842 132 15 15 chr12 130288070 130288206 -13994283 + AluSq/x SINE Alu 1 136 -176 857 252 165 27 chr12 130288275 130288644 -13993845 + MLT1K LTR MaLR 45 464 -124 273 57 0 0 chr12 130288786 130288821 -13993668 + (TA)n Simple_repeat Simple_repeat 1 35 0 1887 131 11 4 chr12 130288821 130289095 -13993394 - AluSx SINE Alu -15 297 22 2218 124 0 0 chr12 130289118 130289417 -13993072 + AluSg SINE Alu 1 299 -11 720 120 83 0 chr12 130289427 130289555 -13992934 - FLAM_C SINE Alu 0 137 1 818 143 0 50 chr12 130289587 130289727 -13992762 + FLAM_C SINE Alu 11 143 0 375 219 29 48 chr12 130289746 130289851 -13992638 + L1MC4 LINE L1 6601 6703 -1339 376 255 10 41 chr12 130289853 130289951 -13992538 + L1MC4 LINE L1 6614 6708 -1334 201 217 0 22 chr12 130289952 130289998 -13992491 + (TA)n Simple_repeat Simple_repeat 2 46 0 531 230 31 68 chr12 130290611 130290737 -13991752 + MIR SINE MIR 20 149 -113 896 129 0 50 chr12 130290737 130290877 -13991612 + FLAM_C SINE Alu 1 133 0 531 230 31 68 chr12 130290877 130290891 -13991598 + MIR SINE MIR 149 156 -106 1622 134 24 102 chr12 130290891 130291226 -13991263 + AluYb8 SINE Alu 1 309 -9 531 230 31 68 chr12 130291226 130291245 -13991244 + MIR SINE MIR 156 174 -88 480 246 75 91 chr12 130291332 130291405 -13991084 - MIR SINE MIR 0 262 189 898 126 0 15 chr12 130291405 130291540 -13990949 + FLAM_C SINE Alu 1 133 0 480 246 75 91 chr12 130291540 130291718 -13990771 - MIR SINE MIR -73 189 15 2119 130 7 3 chr12 130291871 130292163 -13990326 - AluSg SINE Alu -16 294 2 998 202 0 0 chr12 130292174 130292342 -13990147 - FRAM SINE Alu -8 168 1 2163 125 0 0 chr12 130292355 130292644 -13989845 - AluSx SINE Alu -15 297 9 2554 76 0 13 chr12 130293050 130293365 -13989124 + AluSx SINE Alu 1 311 -1 596 268 42 26 chr12 130293390 130293580 -13988909 + MIR SINE MIR 2 194 -68 2449 88 0 7 chr12 130293590 130293895 -13988594 + AluSc SINE Alu 2 304 -5 2079 146 0 0 chr12 130293898 130294185 -13988304 + AluSg SINE Alu 3 289 -21 440 174 128 37 chr12 130294186 130294295 -13988194 + L1ME4a LINE L1 5926 6044 -77 1668 99 0 0 chr12 130294339 130294552 -13987937 - AluSc SINE Alu -5 304 92 23 33 0 0 chr12 130294590 130294620 -13987869 + AT_rich Low_complexity Low_complexity 1 30 0 2210 134 0 0 chr12 130294631 130294937 -13987552 - AluSx SINE Alu -6 306 1 21 0 0 0 chr12 130295142 130295163 -13987326 + AT_rich Low_complexity Low_complexity 1 21 0 911 130 15 0 chr12 130295170 130295301 -13987188 + FRAM SINE Alu 33 165 -11 2260 112 7 0 chr12 130295397 130295693 -13986796 - AluSx SINE Alu -14 298 1 2524 87 0 0 chr12 130295713 130296023 -13986466 - AluSg SINE Alu 0 310 1 253 365 43 5 chr12 130296032 130296240 -13986249 - L1ME LINE L1 -303 5818 5603 1835 178 24 0 chr12 130296285 130296617 -13985872 - MER2 DNA MER2_type -5 340 1 1887 138 50 10 chr12 130296671 130296969 -13985520 + AluSg SINE Alu 1 310 0 316 252 38 124 chr12 130297274 130297378 -13985111 - L1ME4a LINE L1 -5 6116 6037 2081 102 34 3 chr12 130297378 130297672 -13984817 + AluSx SINE Alu 1 303 -9 316 252 38 124 chr12 130297672 130297777 -13984712 - L1ME4a LINE L1 -84 6037 5925 254 175 0 50 chr12 130298276 130298396 -13984093 + (TG)n Simple_repeat Simple_repeat 1 114 0 201 163 0 61 chr12 130298396 130298445 -13984044 + GA-rich Low_complexity Low_complexity 4 49 0 550 243 243 0 chr12 130298476 130298653 -13983836 - MIR SINE MIR 0 262 43 2265 118 0 0 chr12 130298679 130298976 -13983513 + AluSx SINE Alu 1 297 -15 305 172 204 0 chr12 130298998 130299091 -13983398 + L1ME1 LINE L1 6049 6160 -6 2189 138 0 3 chr12 130299106 130299418 -13983071 - AluSx SINE Alu -1 311 1 1771 180 3 19 chr12 130299450 130299766 -13982723 + AluJo SINE Alu 1 311 -1 225 286 33 33 chr12 130299856 130299947 -13982542 + L2 LINE L2 3182 3272 0 214 170 113 19 chr12 130299950 130300003 -13982486 + MIR SINE MIR 93 150 -58 205 193 24 121 chr12 130300032 130300115 -13982374 + L2 LINE L2 3015 3089 -183 217 289 217 0 chr12 130300288 130300371 -13982118 + L2 LINE L2 3172 3272 0 2239 115 0 0 chr12 130300415 130300711 -13981778 + AluSq SINE Alu 1 296 -17 291 253 167 75 chr12 130300907 130301095 -13981394 + MIR SINE MIR 31 214 -13 2099 110 0 0 chr12 130301112 130301385 -13981104 - AluSx SINE Alu -18 294 22 873 133 0 8 chr12 130301388 130301516 -13980973 - AluJo/FLAM SINE Alu -181 131 5 1905 182 3 3 chr12 130301568 130301875 -13980614 - AluJb SINE Alu -1 311 5 700 277 85 0 chr12 130301942 130302130 -13980359 - MIR SINE MIR -8 254 51 951 198 12 0 chr12 130302137 130302309 -13980180 - MER5A DNA MER1_type -12 177 4 829 163 0 15 chr12 130302672 130302807 -13979682 + FLAM_C SINE Alu 1 133 0 2205 121 0 0 chr12 130302998 130303287 -13979202 - AluSx SINE Alu -23 289 1 411 156 0 0 chr12 130303409 130303473 -13979016 + L1MC1 LINE L1 6063 6126 -207 972 94 0 0 chr12 130303475 130303602 -13978887 + AluSc SINE Alu 1 127 -182 1182 174 31 0 chr12 130303602 130303797 -13978692 + AluSc SINE Alu 1 201 -108 1087 110 0 0 chr12 130303811 130303957 -13978532 + AluSp/q SINE Alu 154 299 -14 1307 119 0 0 chr12 130303957 130304133 -13978356 + AluSp SINE Alu 121 296 -17 811 148 7 28 chr12 130304135 130304277 -13978212 + L1MC1 LINE L1 6186 6324 -9 2559 59 0 13 chr12 130304311 130304618 -13977871 + AluY SINE Alu 1 303 -8 1992 135 4 4 chr12 130304618 130304898 -13977591 - AluJo SINE Alu -31 281 1 2252 112 3 0 chr12 130304924 130305218 -13977271 + AluSx SINE Alu 1 295 -17 2284 98 3 3 chr12 130305221 130305517 -13976972 + AluSx SINE Alu 3 298 -14 180 0 0 0 chr12 130305517 130305537 -13976952 + (GA)n Simple_repeat Simple_repeat 2 21 0 359 246 78 22 chr12 130305629 130305794 -13976695 - MIR SINE MIR -50 212 40 2171 104 10 0 chr12 130306012 130306300 -13976189 + AluSq SINE Alu 1 291 -22 2468 76 0 10 chr12 130306300 130306603 -13975886 + AluY SINE Alu 8 307 -4 649 275 61 35 chr12 130306930 130307159 -13975330 - MIR SINE MIR 0 262 28 738 109 58 6 chr12 130307210 130307366 -13975123 + CT-rich Low_complexity Low_complexity 3 166 0 186 43 0 0 chr12 130307369 130307392 -13975097 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2048 99 54 7 chr12 130307397 130307691 -13974798 - AluSx SINE Alu -4 308 1 2328 122 0 0 chr12 130307734 130308046 -13974443 - AluSx SINE Alu 0 312 1 272 265 122 0 chr12 130308104 130308202 -13974287 - L2 LINE L2 -4 3268 3159 1896 147 0 49 chr12 130308219 130308526 -13973963 - AluJo SINE Alu -20 292 1 423 325 24 0 chr12 130308579 130308702 -13973787 + MER5A DNA MER1_type 64 189 0 2109 109 33 20 chr12 130308756 130309058 -13973431 - AluSx SINE Alu -6 306 1 974 116 0 0 chr12 130309131 130309260 -13973229 - FLAM_C SINE Alu 0 133 5 405 318 11 48 chr12 130309896 130310085 -13972404 + MIR SINE MIR 13 194 -68 328 349 26 20 chr12 130310133 130310285 -13972204 - L1MC4 LINE L1 -1334 6708 6556 316 250 180 0 chr12 130310260 130310388 -13972101 + L1MCa LINE L1 1918 2068 -4358 * 183 100 0 0 chr12 130310401 130310431 -13972058 + (TG)n Simple_repeat Simple_repeat 2 31 0 1653 133 18 59 chr12 130310431 130310583 -13971906 - AluJo SINE Alu -28 284 127 245 27 54 0 chr12 130310583 130310620 -13971869 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2220 100 0 0 chr12 130310620 130310900 -13971589 - AluY SINE Alu -30 281 2 2407 94 0 22 chr12 130310905 130311223 -13971266 - AluSx SINE Alu -1 311 1 1653 133 18 59 chr12 130311223 130311349 -13971140 - AluJo SINE Alu -188 124 11 575 263 0 0 chr12 130311363 130311519 -13970970 - L1PB4 LINE L1 -1 6155 6000 1277 153 45 18 chr12 130311554 130311776 -13970713 - AluJb SINE Alu -84 228 1 183 377 0 0 chr12 130311779 130311840 -13970649 + MIR SINE MIR 201 261 -1 271 264 11 66 chr12 130311852 130311943 -13970546 - L2 LINE L2 -36 3277 3192 2211 77 14 17 chr12 130311943 130312240 -13970249 - AluY SINE Alu -14 297 2 446 149 0 0 chr12 130312269 130312343 -13970146 + AluS SINE Alu 229 302 -7 2286 95 3 0 chr12 130312359 130312663 -13969826 - AluSp SINE Alu 0 305 1 1785 141 32 14 chr12 130312670 130312953 -13969536 - AluJo SINE Alu -24 288 1 195 129 0 0 chr12 130313175 130313206 -13969283 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 1183 141 0 0 chr12 130313238 130313401 -13969088 + AluSg/x SINE Alu 136 298 -14 402 261 11 0 chr12 130313402 130313490 -13968999 - L2 LINE L2 -25 3288 3200 440 247 106 40 chr12 130313503 130313778 -13968711 - L2 LINE L2 -273 2999 2693 1015 126 0 0 chr12 130313782 130313917 -13968572 + AluJb SINE Alu 1 135 -177 1502 91 0 0 chr12 130313917 130314103 -13968386 + AluSq SINE Alu 1 186 -127 1772 69 0 9 chr12 130314108 130314326 -13968163 - AluSx SINE Alu -96 216 1 326 44 59 103 chr12 130314358 130314426 -13968063 + AluY SINE Alu 238 302 0 238 191 0 0 chr12 130314696 130314738 -13967751 - L2 LINE L2 -85 3228 3187 2191 78 17 7 chr12 130314783 130315077 -13967412 - AluY SINE Alu -14 297 1 980 131 0 15 chr12 130315077 130315214 -13967275 - AluSq/x SINE Alu -178 135 1 881 158 0 0 chr12 130315250 130315383 -13967106 - FLAM_C SINE Alu 0 133 1 309 159 79 0 chr12 130315418 130315481 -13967008 - L1ME4a LINE L1 -1 6120 6053 505 271 144 6 chr12 130315707 130315888 -13966601 - MIR SINE MIR 0 262 57 2439 75 0 0 chr12 130315915 130316209 -13966280 + AluSg SINE Alu 1 294 -16 1837 179 4 0 chr12 130316210 130316489 -13966000 - AluJb SINE Alu -32 280 1 2502 84 0 0 chr12 130316608 130316906 -13965583 + AluSx SINE Alu 1 298 -14 470 294 54 39 chr12 130317314 130317518 -13964971 - MIR SINE MIR -50 212 6 1077 100 93 0 chr12 130317627 130317777 -13964712 - AluSg/x SINE Alu -15 295 132 2238 93 3 33 chr12 130317777 130318078 -13964411 - AluSq SINE Alu -21 292 1 2249 112 7 0 chr12 130318078 130318381 -13964108 - AluSx SINE Alu -7 305 1 2540 77 0 0 chr12 130318671 130318969 -13963520 - AluSq SINE Alu -13 300 3 298 196 0 0 chr12 130318987 130319038 -13963451 - MIR SINE MIR -2 260 210 298 209 45 30 chr12 130319042 130319109 -13963380 + MIR SINE MIR 2 69 -193 1116 189 17 0 chr12 130319109 130319289 -13963200 + AluJo SINE Alu 1 183 -129 2286 101 0 3 chr12 130319294 130319582 -13962907 + AluSx SINE Alu 6 292 -20 188 217 200 0 chr12 130319649 130319709 -13962780 - MIR SINE MIR -129 79 14 779 145 0 0 chr12 130319709 130319826 -13962663 - FLAM_A SINE Alu -6 136 20 241 261 98 11 chr12 130320041 130320133 -13962356 - MIR SINE MIR -140 122 23 2092 122 7 3 chr12 130320150 130320454 -13962035 - AluSx SINE Alu -7 305 1 2197 126 3 3 chr12 130320454 130320755 -13961734 - AluSq SINE Alu -12 301 1 702 202 32 0 chr12 130320903 130321027 -13961462 - FLAM_C SINE Alu -9 134 7 234 0 0 0 chr12 130321060 130321086 -13961403 + (A)n Simple_repeat Simple_repeat 1 26 0 2261 108 6 16 chr12 130321086 130321402 -13961087 + AluSq SINE Alu 1 313 0 212 278 0 19 chr12 130321414 130321468 -13961021 - MIR SINE MIR -140 68 16 435 236 156 92 chr12 130321491 130321741 -13960748 - L2 LINE L2 0 3313 3048 231 36 0 0 chr12 130322764 130322792 -13959697 + (T)n Simple_repeat Simple_repeat 1 28 0 906 138 0 7 chr12 130322899 130323044 -13959445 + AluSg/x SINE Alu 165 308 -2 2163 98 0 17 chr12 130323222 130323519 -13958970 + AluSq SINE Alu 1 292 -21 289 77 0 0 chr12 130323524 130323563 -13958926 - U2 snRNA snRNA -149 39 1 216 0 0 0 chr12 130323571 130323595 -13958894 + (TTA)n Simple_repeat Simple_repeat 1 24 0 862 189 34 99 chr12 130323711 130323944 -13958545 - MER20 DNA MER1_type -1 218 1 197 226 28 160 chr12 130324023 130324129 -13958360 - MER5A DNA MER1_type -95 94 3 1910 103 85 4 chr12 130324976 130325247 -13957242 + AluSx SINE Alu 1 293 -19 2515 76 0 0 chr12 130325442 130325744 -13956745 - AluY SINE Alu -9 302 1 2410 79 3 7 chr12 130325930 130326262 -13956227 - AluYa5 SINE Alu 0 331 1 2279 98 0 3 chr12 130326270 130326579 -13955910 - AluSp SINE Alu 0 308 1 1862 178 24 0 chr12 130327052 130327344 -13955145 - AluJb SINE Alu -13 299 1 1840 110 110 0 chr12 130327514 130327777 -13954712 + AluSg SINE Alu 1 292 -18 2120 138 0 0 chr12 130329086 130329383 -13953106 + AluSx SINE Alu 1 297 -15 225 291 37 3 chr12 130329504 130329641 -13952848 + MIR SINE MIR 41 222 -40 191 289 10 0 chr12 130330883 130330953 -13951536 - MIR SINE MIR -67 141 69 2375 71 7 10 chr12 130331042 130331352 -13951137 - AluSg1 SINE Alu 0 309 1 226 336 138 18 chr12 130331387 130331604 -13950885 + L2 LINE L2 2844 3086 -227 1714 193 10 3 chr12 130331731 130332031 -13950458 - AluSx SINE Alu -10 302 1 1261 176 137 0 chr12 130332068 130332295 -13950194 - AluJo SINE Alu -15 297 40 2126 141 0 0 chr12 130332309 130332600 -13949889 - AluSx SINE Alu -15 297 7 2351 90 0 0 chr12 130332620 130332909 -13949580 - AluSg SINE Alu -9 301 13 2162 97 24 7 chr12 130332933 130333231 -13949258 - AluY SINE Alu -8 303 1 2024 114 14 0 chr12 130333413 130333720 -13948769 - AluSx SINE Alu 0 311 1 2499 74 3 0 chr12 130333739 130334035 -13948454 - AluSp SINE Alu -16 297 1 2376 96 0 7 chr12 130334833 130335134 -13947355 + AluSx SINE Alu 1 299 -13 2115 119 3 0 chr12 130335138 130335433 -13947056 + AluSg SINE Alu 1 296 -14 2226 110 0 0 chr12 130335433 130335738 -13946751 + AluSx SINE Alu 1 305 0 420 297 89 20 chr12 130335813 130335846 -13946643 - MIR SINE MIR -24 238 209 2364 99 3 0 chr12 130335846 130336150 -13946339 - AluSx SINE Alu -7 305 1 420 297 89 20 chr12 130336150 130336318 -13946171 - MIR SINE MIR -53 209 23 1417 150 0 52 chr12 130336442 130336675 -13945814 - AluJo SINE Alu -91 221 1 1759 160 32 3 chr12 130336687 130336969 -13945520 - AluJb SINE Alu -22 290 1 856 232 36 5 chr12 130337303 130337497 -13944992 - MER105 DNA DNA -2 202 3 866 175 0 0 chr12 130337674 130337800 -13944689 + FLAM_A SINE Alu 1 126 -7 234 0 0 0 chr12 130337804 130337830 -13944659 + (CAA)n Simple_repeat Simple_repeat 2 27 0 316 239 94 17 chr12 130338158 130338275 -13944214 - Charlie8 DNA MER1_type -2152 265 140 296 258 375 0 chr12 130338279 130338407 -13944082 - MIR SINE MIR -71 191 16 2012 78 43 25 chr12 130338407 130338688 -13943801 - AluY SINE Alu -25 286 1 1935 148 18 0 chr12 130338878 130339156 -13943333 - AluSx SINE Alu -29 283 1 2009 122 31 0 chr12 130339156 130339442 -13943047 - AluSx SINE Alu -17 295 1 2599 34 0 3 chr12 130339663 130339959 -13942530 - AluY SINE Alu -16 295 1 190 349 108 50 chr12 130340460 130340701 -13941788 + L2 LINE L2 2824 3078 -194 2133 75 4 4 chr12 130341577 130341844 -13940645 - AluSp SINE Alu -9 304 38 468 245 112 102 chr12 130341998 130342073 -13940416 - Charlie8 DNA MER1_type -138 203 130 2049 96 57 7 chr12 130342073 130342355 -13940134 - AluSg1 SINE Alu -13 296 1 468 245 112 102 chr12 130342355 130342475 -13940014 - Charlie8 DNA MER1_type -211 130 6 2385 78 3 0 chr12 130342839 130343133 -13939356 - AluY SINE Alu -16 295 1 2453 65 7 3 chr12 130343549 130343857 -13938632 + AluY SINE Alu 1 309 -2 2420 72 21 0 chr12 130344698 130344988 -13937501 + AluY SINE Alu 1 296 -15 1600 160 31 21 chr12 130345077 130345364 -13937125 - AluJo SINE Alu -15 297 8 27 0 0 0 chr12 130345871 130345898 -13936591 + AT_rich Low_complexity Low_complexity 1 27 0 501 241 159 12 chr12 130346215 130346385 -13936104 - MIR SINE MIR 0 262 68 274 216 0 0 chr12 130346449 130346500 -13935989 - L3b LINE CR1 -7 1576 1526 296 397 82 9 chr12 130346545 130346777 -13935712 - MIR SINE MIR -6 256 8 744 192 16 0 chr12 130347262 130347387 -13935102 + FLAM_A SINE Alu 1 127 -6 27 0 0 0 chr12 130347393 130347420 -13935069 + AT_rich Low_complexity Low_complexity 1 27 0 184 277 169 0 chr12 130349518 130349583 -13932906 - MIR SINE MIR 0 262 187 690 156 244 0 chr12 130350205 130350340 -13932149 + AluJb SINE Alu 134 301 -11 344 149 60 0 chr12 130350394 130350461 -13932028 + FLAM SINE Alu 63 133 0 1867 158 10 0 chr12 130350518 130350810 -13931679 - AluJo SINE Alu -17 295 1 1885 144 34 7 chr12 130351202 130351500 -13930989 + AluSx SINE Alu 1 306 -6 389 253 151 7 chr12 130351503 130351649 -13930840 + MIR SINE MIR 46 212 -50 2068 134 3 0 chr12 130351788 130352086 -13930403 + AluSq SINE Alu 1 299 -14 723 174 7 54 chr12 130352128 130352277 -13930212 + FLAM_C SINE Alu 2 143 0 240 226 0 57 chr12 130353285 130353391 -13929098 + G-rich Low_complexity Low_complexity 3 102 0 216 247 11 21 chr12 130353544 130353637 -13928852 + (CCG)n Simple_repeat Simple_repeat 2 93 0 1183 159 129 8 chr12 130354445 130354709 -13927780 - AluJb SINE Alu -5 297 2 2278 99 7 0 chr12 130354738 130355031 -13927458 + AluSx SINE Alu 1 295 -17 2058 120 6 43 chr12 130355057 130355381 -13927108 + AluSx SINE Alu 1 312 0 470 294 127 61 chr12 130355472 130355585 -13926904 + L1ME4a LINE L1 5518 5622 -499 2425 80 0 3 chr12 130355585 130355886 -13926603 - AluY SINE Alu -11 300 1 470 294 127 61 chr12 130355886 130356017 -13926472 + L1ME4a LINE L1 5622 5778 -343 233 218 132 63 chr12 130356121 130356295 -13926194 + L1ME4a LINE L1 5935 6120 -1 442 242 83 23 chr12 130357125 130357257 -13925232 - L2 LINE L2 -192 3080 2941 966 174 41 23 chr12 130357260 130357388 -13925101 + AluJ SINE Alu 2 135 -177 2311 110 7 3 chr12 130357388 130357697 -13924792 + AluSx SINE Alu 2 311 -1 966 174 41 23 chr12 130357697 130357740 -13924749 + AluJ SINE Alu 135 176 -136 569 96 0 0 chr12 130357741 130357814 -13924675 - AluJ/FLAM SINE Alu -228 84 12 971 154 0 7 chr12 130357815 130357958 -13924531 + AluJ SINE Alu 154 295 -17 1429 147 0 0 chr12 130358076 130358280 -13924209 + AluJb SINE Alu 84 287 -25 722 53 0 80 chr12 130358446 130358559 -13923930 + L1PB1 LINE L1 6046 6149 -2 1068 194 15 5 chr12 130359506 130359712 -13922777 + MER3 DNA MER1_type 2 209 0 229 194 0 0 chr12 130359814 130359850 -13922639 + L2 LINE L2 3268 3303 -10 28 29 0 0 chr12 130360283 130360318 -13922171 + AT_rich Low_complexity Low_complexity 1 35 0 2439 77 3 3 chr12 130360582 130360881 -13921608 - AluSp SINE Alu -12 301 3 2375 113 3 0 chr12 130360891 130361202 -13921287 - AluSx SINE Alu 0 312 1 297 233 86 78 chr12 130361320 130361436 -13921053 - L2 LINE L2 -1 3271 3155 1488 159 111 0 chr12 130361456 130361561 -13920928 + AluJo SINE Alu 1 93 -219 248 49 49 0 chr12 130361561 130361602 -13920887 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1488 159 111 0 chr12 130361602 130361766 -13920723 + AluJo SINE Alu 93 300 -12 2067 111 31 14 chr12 130361776 130362064 -13920425 - AluSq SINE Alu -20 293 1 2350 97 10 0 chr12 130362069 130362377 -13920112 - AluSp SINE Alu -1 312 2 1139 143 39 97 chr12 130362385 130362506 -13919983 - AluJo SINE Alu -49 263 137 1791 158 10 17 chr12 130362506 130362803 -13919686 - AluJo SINE Alu -17 295 1 1139 143 39 97 chr12 130362803 130362960 -13919529 - AluJo SINE Alu -175 137 1 344 306 0 19 chr12 130362977 130363085 -13919404 - MER5B DNA MER1_type 0 178 73 2218 118 10 0 chr12 130363474 130363771 -13918718 + AluSx SINE Alu 1 300 -12 1711 185 24 0 chr12 130363871 130364158 -13918331 + AluJo SINE Alu 2 295 -17 2473 86 0 0 chr12 130364158 130364462 -13918027 + AluY SINE Alu 1 304 -7 615 184 0 0 chr12 130364487 130364590 -13917899 + FRAM SINE Alu 56 158 -18 2481 80 0 0 chr12 130364590 130364892 -13917597 + AluY SINE Alu 1 302 -9 2422 90 0 6 chr12 130365167 130365478 -13917011 + AluSp SINE Alu 1 309 -4 348 236 3 53 chr12 130365946 130366059 -13916430 + MER5B DNA MER1_type 3 107 -82 930 141 0 7 chr12 130366061 130366196 -13916293 + AluJb SINE Alu 1 134 -178 219 245 0 133 chr12 130366200 130366252 -13916237 + MER5B DNA MER1_type 94 129 -49 1570 130 17 0 chr12 130366252 130366483 -13916006 + AluSg SINE Alu 61 295 -15 219 245 0 133 chr12 130366483 130366528 -13915961 + MER5B DNA MER1_type 129 178 0 389 306 27 41 chr12 130367079 130367226 -13915263 + MIR SINE MIR 90 234 -28 2083 78 0 4 chr12 130368722 130368979 -13913510 - AluSx SINE Alu -56 256 1 1396 135 111 32 chr12 130368999 130369251 -13913238 - AluJo SINE Alu -18 294 23 1611 178 13 23 chr12 130369881 130370184 -13912305 - AluJo SINE Alu -12 300 1 236 288 15 0 chr12 130370483 130370549 -13911940 + MIR SINE MIR 195 261 -1 23 54 0 0 chr12 130370702 130370739 -13911750 + AT_rich Low_complexity Low_complexity 1 37 0 423 281 131 25 chr12 130370998 130371197 -13911292 + MIR SINE MIR 3 222 -40 284 269 7 28 chr12 130371472 130371613 -13910876 + (CGG)n Simple_repeat Simple_repeat 1 138 0 22 0 0 0 chr12 130371807 130371829 -13910660 + GC_rich Low_complexity Low_complexity 1 22 0 664 71 12 0 chr12 130372200 130372285 -13910204 - AluSg SINE Alu -224 86 1 246 224 0 0 chr12 130372340 130372389 -13910100 - L2 LINE L2 0 3272 3224 486 0 0 0 chr12 130372419 130372473 -13910016 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 1008 183 17 71 chr12 130372612 130372852 -13909637 - AluJo SINE Alu -64 248 22 1569 164 39 39 chr12 130372904 130373215 -13909274 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 130373222 130373243 -13909246 + AT_rich Low_complexity Low_complexity 1 21 0 1971 155 0 0 chr12 130373583 130373890 -13908599 - AluJb SINE Alu 0 307 1 298 259 59 24 chr12 130373918 130374003 -13908486 - L2 LINE L2 -47 3225 3138 685 134 0 0 chr12 130374023 130374120 -13908369 - AluJ/FLAM SINE Alu -215 97 1 426 265 81 10 chr12 130374139 130374288 -13908201 - MIR SINE MIR -68 194 37 253 224 282 0 chr12 130374910 130374995 -13907494 + MIR SINE MIR 35 143 -65 209 209 23 0 chr12 130375186 130375229 -13907260 + MIR3 SINE MIR 151 194 -14 693 190 44 1 chr12 130375580 130375740 -13906749 + L1ME LINE L1 5652 5820 -342 1936 139 14 38 chr12 130375748 130376036 -13906453 + AluSx SINE Alu 30 310 -2 987 101 8 0 chr12 130376053 130376182 -13906307 + AluSq/x SINE Alu 9 138 -174 2494 57 3 0 chr12 130376299 130376595 -13905894 + AluY SINE Alu 1 297 -14 2091 114 57 0 chr12 130376616 130376897 -13905592 - AluSx SINE Alu -15 297 1 22 0 0 0 chr12 130376907 130376929 -13905560 + AT_rich Low_complexity Low_complexity 1 22 0 2016 123 3 7 chr12 130377534 130377862 -13904627 + AluSx SINE Alu 1 327 0 1921 99 37 4 chr12 130377887 130378159 -13904330 - AluSp SINE Alu -32 281 1 2003 146 7 0 chr12 130378162 130378450 -13904039 - AluJo SINE Alu -16 296 7 294 316 106 33 chr12 130378699 130378974 -13903515 - LTR16A LTR ERVL -100 350 56 894 198 0 18 chr12 130378975 130379142 -13903347 - FRAM SINE Alu -1 175 12 213 300 24 0 chr12 130379314 130379407 -13903082 + MIR SINE MIR 30 125 -83 409 197 0 0 chr12 130379999 130380070 -13902419 - AluJ/FRAM SINE Alu -14 298 228 2003 113 3 18 chr12 130380141 130380447 -13902042 + AluSq SINE Alu 14 313 0 2404 59 0 36 chr12 130380451 130380754 -13901735 + AluY SINE Alu 1 292 -19 326 310 116 30 chr12 130380756 130380858 -13901631 - HAL1 LINE L1 -343 2164 2072 2284 116 3 3 chr12 130380858 130381168 -13901321 - AluSq SINE Alu -3 310 1 326 310 116 30 chr12 130381168 130381198 -13901291 - HAL1 LINE L1 -435 2072 2046 1670 153 23 36 chr12 130381198 130381506 -13900983 + AluJb SINE Alu 1 304 -8 326 310 116 30 chr12 130381506 130381604 -13900885 - HAL1 LINE L1 -461 2046 1913 2201 107 13 10 chr12 130381610 130381919 -13900570 - AluSg SINE Alu 0 310 1 355 118 0 0 chr12 130381949 130382000 -13900489 - U6 snRNA snRNA -56 51 1 622 260 68 121 chr12 130382009 130382334 -13900155 - L1ME4a LINE L1 -170 5951 5610 2038 145 0 3 chr12 130382334 130382630 -13899859 + AluSx SINE Alu 1 295 -17 622 260 68 121 chr12 130382630 130382647 -13899842 - L1ME4a LINE L1 -511 5610 5594 2225 117 10 0 chr12 130382647 130382946 -13899543 + AluSp SINE Alu 2 303 -10 622 260 68 121 chr12 130382946 130383017 -13899472 - L1ME4a LINE L1 -527 5594 5559 1986 102 41 60 chr12 130383190 130383369 -13899120 - AluSx SINE Alu -4 308 136 2302 107 0 3 chr12 130383369 130383678 -13898811 - AluSc SINE Alu -1 308 1 1986 102 41 60 chr12 130383678 130383812 -13898677 - AluSx SINE Alu -176 136 1 2085 135 0 3 chr12 130384119 130384416 -13898073 - AluSx SINE Alu -11 301 6 2181 108 3 13 chr12 130384449 130384755 -13897734 + AluSg1 SINE Alu 1 303 -6 2010 117 3 7 chr12 130384781 130385063 -13897426 + AluSx SINE Alu 14 294 -18 2545 44 3 0 chr12 130386110 130386403 -13896086 + AluY SINE Alu 1 294 -17 1947 164 0 0 chr12 130386785 130387078 -13895411 + AluSx SINE Alu 5 297 -15 2652 37 0 0 chr12 130387319 130387613 -13894876 - AluY SINE Alu -17 294 1 2089 108 34 10 chr12 130387862 130388159 -13894330 - AluY SINE Alu -5 306 3 2281 97 3 0 chr12 130388161 130388450 -13894039 - AluSg SINE Alu -20 290 1 965 201 12 0 chr12 130388527 130388696 -13893793 + FAM SINE Alu 5 175 0 2289 82 0 3 chr12 130388696 130389022 -13893467 + AluY SINE Alu 1 325 0 4549 168 108 25 chr12 130389022 130389763 -13892726 + Tigger6a DNA MER2_type 7 686 -911 2692 51 0 3 chr12 130389763 130390075 -13892414 - AluY SINE Alu 0 311 1 4549 168 108 25 chr12 130390075 130390132 -13892357 + Tigger6a DNA MER2_type 686 737 -860 2055 123 23 23 chr12 130390132 130390441 -13892048 - AluSx SINE Alu -3 309 1 4549 168 108 25 chr12 130390441 130390636 -13891853 + Tigger6a DNA MER2_type 737 1083 0 2503 57 3 22 chr12 130390762 130391079 -13891410 + AluY SINE Alu 1 311 0 1465 107 0 0 chr12 130391082 130391308 -13891181 + AluSq SINE Alu 104 313 0 628 239 101 55 chr12 130391322 130391560 -13890929 + MIR SINE MIR 12 260 -2 2361 58 31 7 chr12 130391588 130391879 -13890610 + AluSq SINE Alu 1 298 -15 324 307 78 18 chr12 130392586 130392752 -13889737 - MER5A DNA MER1_type -10 179 4 2066 124 3 0 chr12 130393360 130393678 -13888811 + AluSx SINE Alu 1 319 0 1990 126 50 0 chr12 130393868 130394145 -13888344 - AluSx SINE Alu -20 292 2 451 53 0 0 chr12 130394145 130394202 -13888287 - AluSg/x SINE Alu -173 136 80 1791 187 14 0 chr12 130394224 130394513 -13887976 - AluJb SINE Alu -19 293 1 640 174 91 0 chr12 130394672 130394793 -13887696 - AluSq/x SINE Alu -179 133 2 2280 89 0 7 chr12 130394805 130395097 -13887392 - AluSg SINE Alu 0 310 21 2293 107 0 7 chr12 130395168 130395476 -13887013 - AluSg SINE Alu -4 306 1 209 313 30 0 chr12 130395550 130395617 -13886872 + MIR SINE MIR 71 139 -123 713 177 0 0 chr12 130395617 130395730 -13886759 - FLAM_A SINE Alu -14 128 16 834 169 149 6 chr12 130395781 130396015 -13886474 + LTR54 LTR ERV1 1 329 -181 841 184 0 87 chr12 130396015 130396222 -13886267 - AluJo SINE Alu -3 309 121 371 138 0 0 chr12 130396269 130396327 -13886162 - AluSq/x SINE Alu -159 143 86 1079 150 0 90 chr12 130396327 130396560 -13885929 - AluJo SINE Alu -92 220 9 2547 44 7 0 chr12 130396785 130397081 -13885408 + AluY SINE Alu 1 298 -13 193 29 59 0 chr12 130397289 130397323 -13885166 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr12 130397553 130397575 -13884914 + GC_rich Low_complexity Low_complexity 1 22 0 284 269 7 28 chr12 130397769 130397910 -13884579 + (CCG)n Simple_repeat Simple_repeat 1 138 0 423 281 131 25 chr12 130398185 130398384 -13884105 - MIR SINE MIR -40 222 3 23 54 0 0 chr12 130398643 130398680 -13883809 + AT_rich Low_complexity Low_complexity 1 37 0 236 288 15 0 chr12 130398833 130398899 -13883590 - MIR SINE MIR -1 261 195 1611 178 13 23 chr12 130399198 130399501 -13882988 + AluJo SINE Alu 1 300 -12 1396 135 111 32 chr12 130400131 130400383 -13882106 + AluJo SINE Alu 23 294 -18 2083 78 0 4 chr12 130400403 130400660 -13881829 + AluSx SINE Alu 1 256 -56 389 306 27 41 chr12 130402156 130402303 -13880186 - MIR SINE MIR -28 234 90 249 258 0 86 chr12 130402854 130402899 -13879590 - MER5B DNA MER1_type 0 178 143 1570 130 17 0 chr12 130402899 130403130 -13879359 - AluSg SINE Alu -15 295 61 249 258 0 86 chr12 130403130 130403177 -13879312 - MER5B DNA MER1_type -35 143 94 923 122 23 8 chr12 130403184 130403315 -13879174 - AluJb SINE Alu -179 133 1 348 236 3 53 chr12 130403317 130403430 -13879059 - MER5B DNA MER1_type -82 107 3 2414 90 0 7 chr12 130403898 130404208 -13878281 - AluSp SINE Alu -5 308 1 2481 80 0 0 chr12 130404483 130404785 -13877704 - AluY SINE Alu -9 302 1 615 184 0 0 chr12 130404785 130404888 -13877601 - FRAM SINE Alu -18 158 56 2473 86 0 0 chr12 130404913 130405217 -13877272 - AluY SINE Alu -7 304 1 1711 185 24 0 chr12 130405217 130405504 -13876985 - AluJo SINE Alu -17 295 2 2218 118 10 0 chr12 130405604 130405901 -13876588 - AluSx SINE Alu -12 300 1 347 276 0 20 chr12 130406300 130406398 -13876091 + MER5B DNA MER1_type 83 178 0 1283 144 32 86 chr12 130406415 130406571 -13875918 + AluJo SINE Alu 1 137 -175 1817 155 10 17 chr12 130406571 130406868 -13875621 + AluJo SINE Alu 1 295 -17 1283 144 32 86 chr12 130406868 130406989 -13875500 + AluJo SINE Alu 137 263 -49 2145 125 17 0 chr12 130406998 130407294 -13875195 + AluSx SINE Alu 2 302 -10 753 180 23 0 chr12 130407294 130407422 -13875067 + FLAM_C SINE Alu 3 133 0 1777 178 7 0 chr12 130407428 130407720 -13874769 + AluJb SINE Alu 1 294 -18 254 271 179 21 chr12 130407870 130408161 -13874328 + L1ME4a LINE L1 5687 6023 -98 2433 64 0 39 chr12 130408232 130408544 -13873945 - AluY SINE Alu -11 300 1 2221 93 14 3 chr12 130408602 130408891 -13873598 - AluSq SINE Alu -21 292 1 478 236 75 25 chr12 130409990 130410189 -13872300 + L1MC/D LINE L1 5585 5793 -2015 2926 246 241 44 chr12 130410207 130410372 -13872117 - L2 LINE L2 -186 3127 2996 1611 161 58 15 chr12 130410372 130410646 -13871843 - AluJo SINE Alu -26 286 1 2926 246 241 44 chr12 130410646 130411700 -13870789 - L2 LINE L2 -317 2996 2151 2402 56 3 40 chr12 130411700 130412022 -13870467 - AluY SINE Alu -1 310 1 2926 246 241 44 chr12 130412022 130412555 -13869934 - L2 LINE L2 -1162 2151 1724 2052 138 0 0 chr12 130412555 130412872 -13869617 + AluSx SINE Alu 1 317 0 2926 246 241 44 chr12 130412872 130413064 -13869425 - L2 LINE L2 -1589 1724 819 232 228 184 18 chr12 130413082 130413196 -13869293 - MER3 DNA MER1_type 0 2580 2448 * 426 198 71 24 chr12 130413163 130413289 -13869200 - MER3 DNA MER1_type -86 123 39 376 212 227 0 chr12 130413295 130413427 -13869062 - L2 LINE L2 -2518 796 635 353 288 188 12 chr12 130413445 130413605 -13868884 - L2 LINE L2 -2989 325 138 2529 70 3 6 chr12 130413636 130413948 -13868541 - AluY SINE Alu 0 311 1 1806 193 0 0 chr12 130414034 130414334 -13868155 - AluJb SINE Alu -8 304 5 2203 117 3 13 chr12 130414343 130414651 -13867838 - AluSq SINE Alu -8 305 1 837 224 30 6 chr12 130414682 130414847 -13867642 - FAM SINE Alu -6 169 1 891 163 208 0 chr12 130414868 130415070 -13867419 - MSTA LTR MaLR 0 428 185 614 67 0 0 chr12 130415079 130415154 -13867335 + Alu SINE Alu 224 298 -12 2246 104 0 17 chr12 130415165 130415462 -13867027 + AluSx SINE Alu 1 292 -20 2312 104 0 19 chr12 130416091 130416398 -13866091 - AluSg SINE Alu -9 301 1 2328 82 16 20 chr12 130416409 130416713 -13865776 - AluY SINE Alu -8 303 1 2203 109 3 7 chr12 130416911 130417215 -13865274 - AluY SINE Alu -8 303 1 1068 103 0 0 chr12 130417215 130417351 -13865138 - AluSq/x SINE Alu -176 136 1 2221 119 0 0 chr12 130418199 130418492 -13863997 - AluSx SINE Alu -19 293 1 2295 92 0 26 chr12 130418501 130418806 -13863683 - AluSp SINE Alu -16 297 1 2135 124 7 0 chr12 130418808 130419099 -13863390 - AluSx SINE Alu -19 293 1 2598 50 10 0 chr12 130419264 130419567 -13862922 + AluY SINE Alu 2 307 -4 1627 77 39 0 chr12 130419880 130420088 -13862401 + AluY SINE Alu 1 216 -95 204 40 0 0 chr12 130420095 130420120 -13862369 + (A)n Simple_repeat Simple_repeat 1 25 0 257 388 35 9 chr12 130420935 130421051 -13861438 - L2 LINE L2 -47 3225 3107 452 263 11 37 chr12 130421138 130421328 -13861161 + L1M4 LINE L1 4885 5069 -1077 41 36 0 0 chr12 130421533 130421588 -13860901 + AT_rich Low_complexity Low_complexity 1 55 0 2229 86 7 10 chr12 130421588 130421880 -13860609 - AluSx SINE Alu -21 291 1 323 140 0 0 chr12 130421944 130421994 -13860495 - Alu SINE Alu -13 288 239 238 206 33 11 chr12 130421999 130422091 -13860398 + (TTTAA)n Simple_repeat Simple_repeat 1 94 0 277 172 17 0 chr12 130422128 130422186 -13860303 - FLAM SINE Alu -2 131 73 1283 123 0 0 chr12 130422187 130422374 -13860115 - AluSg/x SINE Alu -8 302 116 2360 104 0 7 chr12 130422389 130422696 -13859793 - AluSq SINE Alu -8 305 1 419 285 36 29 chr12 130423637 130423774 -13858715 - MER5A DNA MER1_type -51 138 1 334 271 233 6 chr12 130423788 130423979 -13858510 - MIR SINE MIR 0 262 34 1717 59 71 16 chr12 130424244 130424498 -13857991 - L1PA13 LINE L1 0 6163 5896 2348 113 3 0 chr12 130424506 130424816 -13857673 - AluSp SINE Alu -2 311 1 1098 66 33 0 chr12 130424816 130424968 -13857521 - L1PA13 LINE L1 -480 5688 5532 1343 168 141 19 chr12 130426596 130426858 -13855631 + AluJb SINE Alu 1 294 -18 370 206 156 43 chr12 130427829 130427970 -13854519 + MIR SINE MIR 81 237 -25 2089 148 0 0 chr12 130428722 130429020 -13853469 + AluJb SINE Alu 1 298 -14 365 344 70 22 chr12 130429451 130429659 -13852830 + L1MC/D LINE L1 5597 5811 -353 2299 112 0 0 chr12 130429662 130429958 -13852531 + AluSg SINE Alu 1 296 -14 201 213 0 0 chr12 130430102 130430149 -13852340 + (TATATG)n Simple_repeat Simple_repeat 3 49 0 1760 158 56 3 chr12 130430215 130430499 -13851990 + AluJb SINE Alu 1 299 -13 2264 120 0 0 chr12 130430715 130431015 -13851474 - AluSx SINE Alu -12 300 1 722 171 110 14 chr12 130431017 130431163 -13851326 - FRAM SINE Alu -19 157 1 2046 96 7 73 chr12 130431206 130431530 -13850959 - AluSp SINE Alu 0 304 1 210 193 275 55 chr12 130431607 130431716 -13850773 - MIR3 SINE MIR -64 144 12 2246 109 3 22 chr12 130431778 130432091 -13850398 - AluSx SINE Alu -5 307 1 180 0 0 0 chr12 130432144 130432164 -13850325 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1942 102 25 7 chr12 130432164 130432438 -13850051 - AluY SINE Alu -32 279 1 2280 110 7 0 chr12 130432438 130432738 -13849751 - AluSx SINE Alu -10 302 1 193 256 0 0 chr12 130433943 130433982 -13848507 - L2 LINE L2 -36 3277 3239 2346 92 7 0 chr12 130434315 130434619 -13847870 - AluY SINE Alu -5 306 1 252 0 0 0 chr12 130434839 130434867 -13847622 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 2112 106 0 18 chr12 130434871 130435154 -13847335 - AluSq SINE Alu -35 278 1 189 0 0 0 chr12 130435154 130435175 -13847314 + (T)n Simple_repeat Simple_repeat 1 21 0 822 243 187 42 chr12 130435213 130435767 -13846722 - L1MC4 LINE L1 -2 8040 7281 1027 156 88 29 chr12 130435784 130436022 -13846467 - MSTB1 LTR MaLR 0 432 181 911 164 45 23 chr12 130436202 130436379 -13846110 - MSTB1 LTR MaLR -249 183 3 2443 83 0 3 chr12 130436897 130437198 -13845291 + AluSp SINE Alu 1 300 -13 1898 108 49 24 chr12 130437211 130437498 -13844991 + AluSq SINE Alu 1 294 -19 257 242 110 22 chr12 130438226 130438317 -13844172 - MER117 DNA MER1_type 0 197 99 589 289 46 23 chr12 130438590 130438763 -13843726 - MIR SINE MIR -76 186 10 200 95 0 71 chr12 130438840 130438882 -13843607 + (GAAAA)n Simple_repeat Simple_repeat 5 43 0 1918 97 43 0 chr12 130440376 130440655 -13841834 - AluY SINE Alu -20 291 1 2008 125 17 0 chr12 130440872 130441159 -13841330 + AluSx SINE Alu 1 292 -20 1724 112 43 14 chr12 130442201 130442477 -13840012 + AluSx SINE Alu 12 295 -17 238 211 133 11 chr12 130444167 130444257 -13838232 - L1ME4a LINE L1 -54 6067 5967 837 189 142 14 chr12 130444267 130444479 -13838010 + Charlie1 DNA MER1_type 1 239 -2522 418 158 158 33 chr12 130444465 130444585 -13837904 + Charlie1 DNA MER1_type 2622 2756 -5 * 24 67 0 0 chr12 130444596 130444641 -13837848 + AT_rich Low_complexity Low_complexity 1 45 0 763 230 23 9 chr12 130444655 130444872 -13837617 - L1ME3 LINE L1 -25 6137 5918 666 96 10 39 chr12 130444887 130444973 -13837516 - AluSq SINE Alu -93 220 136 1931 121 62 0 chr12 130444973 130445263 -13837226 - AluSx SINE Alu -4 308 1 666 96 10 39 chr12 130445263 130445280 -13837209 - AluSq SINE Alu -177 136 120 354 326 17 6 chr12 130445294 130445466 -13837023 - L1ME3 LINE L1 -291 5830 5657 219 286 254 2 chr12 130445854 130445950 -13836539 - MIR SINE MIR -63 145 30 462 333 44 0 chr12 130446030 130446213 -13836276 + MIR SINE MIR 51 241 -21 192 111 0 0 chr12 130446214 130446250 -13836239 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1815 77 54 0 chr12 130446317 130446577 -13835912 - AluSx SINE Alu -24 288 15 2045 92 27 0 chr12 130447252 130447545 -13834944 - AluY SINE Alu -10 301 1 2008 135 10 0 chr12 130447545 130447841 -13834648 - AluSx SINE Alu -13 299 1 382 287 246 0 chr12 130447883 130448078 -13834411 - MIR SINE MIR -12 250 8 356 303 56 25 chr12 130448517 130448679 -13833810 + L1MC/D LINE L1 5593 5759 -2049 859 215 69 73 chr12 130448695 130448745 -13833744 - MIR SINE MIR -13 249 200 2292 80 3 7 chr12 130448745 130449059 -13833430 + AluSq SINE Alu 1 313 0 859 215 69 73 chr12 130449059 130449253 -13833236 - MIR SINE MIR -62 200 5 1265 154 161 74 chr12 130449416 130449563 -13832926 + MLT1A1 LTR MaLR 10 143 -222 2061 145 0 20 chr12 130449563 130449867 -13832622 + AluSx SINE Alu 1 298 -14 1265 154 161 74 chr12 130449867 130450043 -13832446 + MLT1A1 LTR MaLR 143 361 -4 2208 121 7 3 chr12 130450086 130450392 -13832097 + AluJo SINE Alu 1 307 -5 323 266 80 18 chr12 130450416 130450529 -13831960 - MIR SINE MIR -62 200 81 677 212 241 10 chr12 130450608 130450811 -13831678 + MIR SINE MIR 13 262 0 896 110 0 0 chr12 130450834 130450952 -13831537 - FLAM_C SINE Alu -25 118 1 206 208 75 38 chr12 130451616 130451669 -13830820 - MIR SINE MIR -73 135 81 493 273 153 0 chr12 130451730 130451906 -13830583 + MIR SINE MIR 2 204 -58 1964 141 0 17 chr12 130451935 130452232 -13830257 - AluJo SINE Alu -20 292 1 526 255 7 21 chr12 130452233 130452374 -13830115 - MIR SINE MIR -111 151 13 2187 98 0 7 chr12 130452398 130452685 -13829804 - AluSg SINE Alu -25 285 1 1913 146 3 36 chr12 130452692 130453000 -13829489 - AluJb SINE Alu -14 298 1 683 248 90 74 chr12 130453289 130453397 -13829092 - L2 LINE L2 -24 3248 3143 2207 92 4 0 chr12 130453397 130453702 -13828787 + AluSq SINE Alu 1 306 0 683 248 90 74 chr12 130453702 130453903 -13828586 - L2 LINE L2 -129 3143 2933 567 215 256 18 chr12 130454234 130454457 -13828032 - MLT1G1 LTR MaLR -7 588 313 3200 143 54 14 chr12 130454457 130455005 -13827484 - L1MB5 LINE L1 -70 6104 5529 1529 211 13 50 chr12 130455005 130455314 -13827175 + MLT1A1 LTR MaLR 1 295 -70 2066 144 0 0 chr12 130455314 130455620 -13826869 - AluSx SINE Alu -6 306 1 1529 211 13 50 chr12 130455620 130455689 -13826800 + MLT1A1 LTR MaLR 295 365 0 3200 143 54 14 chr12 130455689 130455728 -13826761 - L1MB5 LINE L1 -645 5529 5493 2337 101 0 0 chr12 130455728 130456026 -13826463 - AluSx SINE Alu -14 298 1 1331 147 50 56 chr12 130456682 130456838 -13825651 - L1M4 LINE L1 -703 5481 5326 2260 110 7 0 chr12 130456838 130457138 -13825351 - AluSq SINE Alu -11 302 1 1331 147 50 56 chr12 130457138 130457414 -13825075 - L1M4 LINE L1 -858 5326 5049 1101 127 7 0 chr12 130457415 130457592 -13824897 - AluSp SINE Alu 0 314 137 2071 153 3 0 chr12 130457651 130457958 -13824531 - AluSx SINE Alu -4 308 1 269 246 155 82 chr12 130458028 130458235 -13824254 - L2 LINE L2 -782 2532 2311 2489 72 0 3 chr12 130458415 130458719 -13823770 + AluY SINE Alu 1 303 -8 2041 91 0 0 chr12 130458813 130459067 -13823422 - AluSq SINE Alu -49 264 11 237 192 39 0 chr12 130459097 130459149 -13823340 - L1ME3 LINE L1 -92 6070 6017 544 252 94 1 chr12 130459162 130459304 -13823185 - MIR SINE MIR -63 145 38 547 265 104 23 chr12 130459846 130460092 -13822397 + L2 LINE L2 2803 3066 -247 743 269 75 18 chr12 130460110 130460337 -13822152 + MIR SINE MIR 23 262 0 448 221 47 127 chr12 130460330 130460429 -13822060 + L2 LINE L2 3118 3193 -120 * 2173 123 13 3 chr12 130460429 130460738 -13821751 + AluSx SINE Alu 1 312 0 448 221 47 127 chr12 130460738 130460851 -13821638 + L2 LINE L2 3193 3313 0 316 269 0 0 chr12 130460920 130460998 -13821491 + L2 LINE L2 2889 2966 -348 269 297 49 1 chr12 130461150 130461240 -13821249 - MIR SINE MIR -60 148 64 280 318 118 9 chr12 130461417 130461527 -13820962 + MIR SINE MIR 25 146 -116 1819 124 38 4 chr12 130461567 130461861 -13820628 - AluSx SINE Alu 0 312 10 831 250 26 0 chr12 130461909 130462101 -13820388 - MIR SINE MIR -56 206 10 1257 110 0 42 chr12 130462578 130462769 -13819720 - AluSg/x SINE Alu 0 312 130 225 54 0 0 chr12 130462986 130463023 -13819466 + L1MB3 LINE L1 6147 6183 0 1427 128 0 72 chr12 130463589 130463721 -13818768 - AluJo SINE Alu -80 232 125 2684 42 3 3 chr12 130463721 130464027 -13818462 + AluSp SINE Alu 1 306 -7 1427 128 0 72 chr12 130464027 130464144 -13818345 - AluJo SINE Alu -187 125 1 790 288 114 13 chr12 130464176 130464395 -13818094 - LTR33 LTR ERVL -13 508 313 2230 113 33 0 chr12 130464395 130464697 -13817792 + AluSx SINE Alu 1 312 0 790 288 114 13 chr12 130464697 130464932 -13817557 - LTR33 LTR ERVL -208 313 8 731 140 84 21 chr12 130465025 130465168 -13817321 - MLT1F LTR MaLR -2 540 389 1445 136 5 32 chr12 130465212 130465433 -13817056 + AluJb SINE Alu 86 300 -12 314 163 19 31 chr12 130465439 130465519 -13816970 + L1MA2 LINE L1 6058 6138 -167 2171 117 13 3 chr12 130465535 130465550 -13816939 - AluSx SINE Alu -1 311 298 243 0 0 0 chr12 130465550 130465577 -13816912 + (TTAAA)n Simple_repeat Simple_repeat 1 27 0 2171 117 13 3 chr12 130465577 130465869 -13816620 - AluSx SINE Alu -14 298 1 1316 109 5 0 chr12 130465869 130466061 -13816428 + L1MA2 LINE L1 6112 6304 0 1365 225 104 20 chr12 130466087 130466274 -13816215 - MLT1F LTR MaLR -154 388 218 2317 104 0 7 chr12 130466274 130466581 -13815908 + AluSx SINE Alu 1 305 -7 2193 119 23 0 chr12 130466581 130466883 -13815606 + AluSc SINE Alu 1 309 0 1365 225 104 20 chr12 130466883 130467050 -13815439 - MLT1F LTR MaLR -323 219 3 2211 110 0 0 chr12 130467087 130467398 -13815091 + AluSx SINE Alu 1 311 0 510 206 29 0 chr12 130467501 130467603 -13814886 - MIR SINE MIR -111 151 47 2336 99 10 0 chr12 130467615 130467917 -13814572 - AluSc SINE Alu -4 305 1 2181 98 0 4 chr12 130467923 130468200 -13814289 - AluSx SINE Alu -18 294 19 670 106 0 0 chr12 130468289 130468374 -13814115 + AluS SINE Alu 7 91 -222 1461 116 0 46 chr12 130468374 130468590 -13813899 - AluJo SINE Alu -106 206 1 2434 189 16 6 chr12 130468593 130469101 -13813388 - L1ME2 LINE L1 -335 5829 5317 2047 162 36 33 chr12 130469110 130469660 -13812829 + MLT2A2 LTR ERVL 1 554 0 41359 84 7 10 chr12 130469660 130469701 -13812788 + HERVL-A2 LTR ERVL 1 41 -5613 2362 92 0 29 chr12 130469701 130470016 -13812473 - AluSq SINE Alu 0 313 1 41359 84 7 10 chr12 130470016 130470180 -13812309 + HERVL-A2 LTR ERVL 41 204 -5450 2277 74 25 0 chr12 130470180 130470463 -13812026 + AluSc SINE Alu 1 290 -19 41359 84 7 10 chr12 130470463 130475925 -13806564 + HERVL-A2 LTR ERVL 204 5654 0 2022 162 35 31 chr12 130475925 130476474 -13806015 + MLT2A2 LTR ERVL 1 554 0 1831 207 73 52 chr12 130476475 130476758 -13805731 - L1ME2 LINE L1 -833 5313 5037 1862 176 0 39 chr12 130476758 130477065 -13805424 - AluJo SINE Alu -17 295 1 1831 207 73 52 chr12 130477065 130477410 -13805079 - L1ME2 LINE L1 -1109 5037 4672 1434 180 82 54 chr12 130477407 130477812 -13804677 + L1M4 LINE L1 4007 4422 -1724 * 996 122 0 0 chr12 130477813 130477944 -13804545 + FLAM_C SINE Alu 1 131 -2 266 127 0 48 chr12 130477946 130478009 -13804480 + L1M4 LINE L1 4606 4665 -1481 2207 94 21 0 chr12 130478117 130478403 -13804086 - AluSg SINE Alu -13 297 6 1660 164 69 45 chr12 130478549 130478591 -13803898 - L1MB5 LINE L1 -10 6164 6124 2189 133 0 16 chr12 130478591 130478908 -13803581 + AluSx SINE Alu 1 312 0 1660 164 69 45 chr12 130478908 130479185 -13803304 - L1MB5 LINE L1 -50 6124 5832 2322 126 0 0 chr12 130479185 130479494 -13802995 - AluSx SINE Alu -1 311 3 1660 164 69 45 chr12 130479494 130479550 -13802939 - L1MB5 LINE L1 -342 5832 5779 1896 137 50 63 chr12 130479552 130479703 -13802786 + THE1C LTR MaLR 1 152 -223 1940 128 3 28 chr12 130479703 130480021 -13802468 - AluJo SINE Alu 0 312 2 1896 137 50 63 chr12 130480021 130480248 -13802241 + THE1C LTR MaLR 152 375 0 1804 141 0 11 chr12 130480248 130480510 -13801979 - AluJb SINE Alu -53 259 1 244 304 54 18 chr12 130480518 130480630 -13801859 - L2 LINE L2 -4 3268 3153 208 227 193 57 chr12 130480905 130480993 -13801496 - MIR SINE MIR -160 102 3 200 284 0 68 chr12 130481575 130481663 -13800826 + G-rich Low_complexity Low_complexity 1 82 0 572 282 213 17 chr12 130481798 130482146 -13800343 + L2 LINE L2 2809 3224 -89 910 155 108 0 chr12 130482146 130482294 -13800195 + AluJb SINE Alu 137 300 -12 440 252 0 29 chr12 130482296 130482399 -13800090 + L2 LINE L2 3214 3313 0 435 258 25 33 chr12 130482393 130482513 -13799976 - MIR SINE MIR -71 137 19 * 222 315 0 15 chr12 130483014 130483086 -13799403 + MIR SINE MIR 83 154 -54 1771 164 45 11 chr12 130483122 130483409 -13799080 + AluJo SINE Alu 1 297 -15 887 302 0 28 chr12 130483540 130483795 -13798694 - MIR SINE MIR -12 250 3 2263 99 7 0 chr12 130483795 130484079 -13798410 + AluSx SINE Alu 1 286 -26 216 0 0 0 chr12 130484614 130484638 -13797851 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 1496 267 39 33 chr12 130484655 130484784 -13797705 + L2 LINE L2 2711 2838 -475 2090 119 10 3 chr12 130484784 130485078 -13797411 - AluSx SINE Alu -16 296 1 1496 267 39 33 chr12 130485078 130485556 -13796933 + L2 LINE L2 2838 3313 0 236 220 0 0 chr12 130485575 130485625 -13796864 + MIR SINE MIR 78 127 -81 255 31 0 0 chr12 130485702 130485734 -13796755 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 238 314 23 0 chr12 130486347 130486433 -13796056 + L2 LINE L2 3222 3309 -4 2409 89 0 0 chr12 130486474 130486767 -13795722 - AluSc SINE Alu -16 293 1 1044 110 7 14 chr12 130486769 130486915 -13795574 - FRAM SINE Alu -20 156 12 2293 72 0 3 chr12 130486935 130487227 -13795262 - AluY SINE Alu -20 291 1 380 121 30 15 chr12 130487234 130487300 -13795189 - MIR SINE MIR -64 144 78 277 255 160 65 chr12 130487412 130487487 -13795002 + MIR SINE MIR 28 94 -168 2290 102 0 7 chr12 130487487 130487792 -13794697 + AluSq SINE Alu 1 303 -10 277 255 160 65 chr12 130487792 130487916 -13794573 + MIR SINE MIR 94 246 -16 1524 153 11 46 chr12 130488283 130488440 -13794049 - AluJb SINE Alu -19 293 149 2225 101 3 7 chr12 130488440 130488746 -13793743 - AluSx SINE Alu -7 305 1 1524 153 11 46 chr12 130488746 130488870 -13793619 - AluJb SINE Alu -163 149 22 1673 190 11 3 chr12 130489806 130490090 -13792399 - AluJo SINE Alu -26 286 1 266 304 108 20 chr12 130490120 130490222 -13792267 + L2 LINE L2 3199 3309 -4 2348 109 3 0 chr12 130490489 130490792 -13791697 - AluSg SINE Alu -6 304 1 1370 265 90 20 chr12 130490849 130491336 -13791153 - LTR33 LTR ERVL 0 521 1 23 0 0 0 chr12 130491563 130491586 -13790903 + AT_rich Low_complexity Low_complexity 1 23 0 2060 146 3 0 chr12 130491733 130492034 -13790455 - AluSx SINE Alu -10 302 1 2312 115 0 0 chr12 130493702 130494006 -13788483 + AluSx SINE Alu 1 304 -8 263 269 71 99 chr12 130494037 130494178 -13788311 - L2 LINE L2 0 3272 3136 898 123 0 8 chr12 130495088 130495218 -13787271 - FLAM_C SINE Alu -4 129 1 790 288 114 13 chr12 130495250 130495469 -13787020 - LTR33 LTR ERVL -13 508 313 2230 113 33 0 chr12 130495469 130495771 -13786718 + AluSx SINE Alu 1 312 0 790 288 114 13 chr12 130495771 130496006 -13786483 - LTR33 LTR ERVL -208 313 8 731 140 84 21 chr12 130496099 130496242 -13786247 - MLT1F LTR MaLR -2 540 389 1234 170 0 39 chr12 130496286 130496515 -13785974 + AluSg/x SINE Alu 84 303 -7 2310 110 3 22 chr12 130496515 130496833 -13785656 + AluSx SINE Alu 1 312 0 523 237 92 26 chr12 130496841 130496993 -13785496 - MLT1F LTR MaLR -378 164 3 1107 96 0 0 chr12 130497030 130497166 -13785323 + AluSq/x SINE Alu 1 136 -177 2193 112 3 7 chr12 130497166 130497470 -13785019 + AluY SINE Alu 1 303 -8 2296 86 16 20 chr12 130497668 130497972 -13784517 + AluY SINE Alu 1 303 -8 2132 98 13 30 chr12 130497983 130498288 -13784201 + AluSg SINE Alu 1 300 -10 753 180 23 0 chr12 130498288 130498416 -13784073 + FLAM_C SINE Alu 3 133 0 1777 178 7 0 chr12 130498421 130498713 -13783776 + AluJb SINE Alu 1 294 -18 270 261 189 31 chr12 130498863 130499154 -13783335 + L1ME4a LINE L1 5687 6023 -98 2433 64 0 39 chr12 130499225 130499537 -13782952 - AluY SINE Alu -11 300 1 2221 93 14 3 chr12 130499595 130499884 -13782605 - AluSq SINE Alu -21 292 1 478 236 75 25 chr12 130500983 130501182 -13781307 + L1MC/D LINE L1 5585 5793 -2015 2926 246 241 44 chr12 130501200 130501365 -13781124 - L2 LINE L2 -186 3127 2996 1597 164 58 15 chr12 130501365 130501639 -13780850 - AluJo SINE Alu -26 286 1 2926 246 241 44 chr12 130501639 130502693 -13779796 - L2 LINE L2 -317 2996 2151 2392 59 3 40 chr12 130502693 130503015 -13779474 - AluY SINE Alu -1 310 1 2926 246 241 44 chr12 130503015 130503548 -13778941 - L2 LINE L2 -1162 2151 1724 2052 138 0 0 chr12 130503548 130503865 -13778624 + AluSx SINE Alu 1 317 0 2926 246 241 44 chr12 130503865 130504057 -13778432 - L2 LINE L2 -1589 1724 819 232 228 184 18 chr12 130504075 130504189 -13778300 - MER3 DNA MER1_type 0 2619 2487 * 426 198 71 24 chr12 130504156 130504282 -13778207 - MER3 DNA MER1_type -86 123 39 376 212 227 0 chr12 130504288 130504420 -13778069 - L2 LINE L2 -2518 796 635 353 288 188 12 chr12 130504438 130504598 -13777891 - L2 LINE L2 -2989 325 138 2280 91 3 25 chr12 130504629 130504947 -13777542 - AluY SINE Alu 0 311 1 1806 193 0 0 chr12 130505033 130505333 -13777156 - AluJb SINE Alu -8 304 5 198 0 0 0 chr12 130505342 130505364 -13777125 + (T)n Simple_repeat Simple_repeat 1 22 0 1569 191 24 6 chr12 130505499 130505829 -13776660 + L1ME2 LINE L1 5494 5829 -335 1998 136 0 33 chr12 130505832 130506134 -13776355 + AluSx SINE Alu 1 292 -20 656 308 10 29 chr12 130506768 130507105 -13775384 - AluSg SINE Alu 0 335 5 207 0 0 0 chr12 130507121 130507144 -13775345 + (T)n Simple_repeat Simple_repeat 1 23 0 1887 128 34 13 chr12 130507631 130507929 -13774560 - AluY SINE Alu -5 306 3 2356 69 3 3 chr12 130507931 130508222 -13774267 - AluY SINE Alu -20 291 1 1068 103 0 0 chr12 130508222 130508358 -13774131 - AluSq/x SINE Alu -177 136 1 2221 119 0 0 chr12 130509206 130509499 -13772990 - AluSx SINE Alu -19 293 1 2295 92 0 26 chr12 130509508 130509813 -13772676 - AluSp SINE Alu -16 297 1 2344 96 0 0 chr12 130509815 130510107 -13772382 - AluY SINE Alu -19 292 1 1062 150 138 16 chr12 130510107 130510164 -13772325 + Tigger6 DNA MER2_type 1314 1363 -234 2055 123 23 23 chr12 130510164 130510473 -13772016 - AluSx SINE Alu -3 309 1 1062 150 138 16 chr12 130510473 130510668 -13771821 + Tigger6 DNA MER2_type 1363 1597 0 2469 63 3 22 chr12 130510794 130511111 -13771378 + AluY SINE Alu 1 311 0 1373 117 0 5 chr12 130511115 130511342 -13771147 + AluSq SINE Alu 104 313 0 628 239 101 55 chr12 130511356 130511594 -13770895 + MIR SINE MIR 12 260 -2 2341 59 31 7 chr12 130511622 130511911 -13770578 + AluSq SINE Alu 1 296 -17 461 249 24 35 chr12 130512541 130512710 -13769779 + LTR4 LTR ERV1 390 556 -40 1574 95 0 36 chr12 130512713 130512935 -13769554 + AluY SINE Alu 74 287 -24 1632 77 39 0 chr12 130512965 130513173 -13769316 + AluY SINE Alu 1 216 -95 195 42 0 0 chr12 130513180 130513204 -13769285 + (A)n Simple_repeat Simple_repeat 1 24 0 257 388 35 9 chr12 130514019 130514135 -13768354 - L2 LINE L2 -47 3225 3107 452 263 11 37 chr12 130514222 130514412 -13768077 + L1M4 LINE L1 4885 5069 -1077 41 36 0 0 chr12 130514617 130514672 -13767817 + AT_rich Low_complexity Low_complexity 1 55 0 2198 90 7 10 chr12 130514672 130514962 -13767527 - AluSx SINE Alu -21 291 3 292 180 0 0 chr12 130515028 130515078 -13767411 - Alu SINE Alu -13 288 239 216 99 70 42 chr12 130515080 130515151 -13767338 + (TTAA)n Simple_repeat Simple_repeat 3 75 0 31 0 0 0 chr12 130515151 130515182 -13767307 + AT_rich Low_complexity Low_complexity 1 31 0 277 172 17 0 chr12 130515211 130515269 -13767220 - FLAM SINE Alu -2 131 73 1609 159 37 24 chr12 130515270 130515473 -13767016 - AluSx SINE Alu -7 305 106 2345 112 0 0 chr12 130515473 130515776 -13766713 - AluSc SINE Alu -6 303 1 2086 133 27 3 chr12 130515781 130516082 -13766407 - AluSq SINE Alu -5 308 1 1609 159 37 24 chr12 130516082 130516167 -13766322 - AluSx SINE Alu -209 103 7 2368 104 0 7 chr12 130516239 130516547 -13765942 - AluSq SINE Alu -7 306 1 419 285 36 29 chr12 130517488 130517625 -13764864 - MER5A DNA MER1_type -51 138 1 334 271 233 6 chr12 130517639 130517830 -13764659 - MIR SINE MIR 0 262 34 1717 59 71 16 chr12 130518095 130518349 -13764140 - L1PA13 LINE L1 0 6163 5896 2353 113 3 0 chr12 130518357 130518667 -13763822 - AluSp SINE Alu -2 311 1 1098 66 33 0 chr12 130518667 130518819 -13763670 - L1PA13 LINE L1 -480 5688 5532 1343 168 141 19 chr12 130520447 130520709 -13761780 + AluJb SINE Alu 1 294 -18 371 206 156 43 chr12 130521680 130521821 -13760668 + MIR SINE MIR 81 237 -25 1960 147 0 0 chr12 130522573 130522873 -13759616 + AluJb SINE Alu 1 300 -12 337 317 89 36 chr12 130523304 130523511 -13758978 + L1MC/D LINE L1 5597 5811 -353 2172 111 0 0 chr12 130523514 130523812 -13758677 + AluSg SINE Alu 1 298 -12 213 39 0 0 chr12 130523952 130523978 -13758511 + (TG)n Simple_repeat Simple_repeat 2 27 0 1602 162 56 3 chr12 130524067 130524351 -13758138 + AluJb SINE Alu 1 299 -13 2099 123 0 0 chr12 130524567 130524867 -13757622 - AluSx SINE Alu -12 300 1 691 158 110 27 chr12 130524869 130525015 -13757474 - FRAM SINE Alu -21 155 1 1905 96 7 73 chr12 130525058 130525382 -13757107 - AluSp SINE Alu 0 304 1 207 193 275 55 chr12 130525459 130525568 -13756921 - MIR3 SINE MIR -64 144 12 1977 114 3 23 chr12 130525630 130525929 -13756560 - AluSx SINE Alu -19 293 1 180 0 0 0 chr12 130525982 130526002 -13756487 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1815 102 25 7 chr12 130526002 130526276 -13756213 - AluY SINE Alu -32 279 1 2130 110 7 0 chr12 130526276 130526576 -13755913 - AluSx SINE Alu -10 302 1 191 256 0 0 chr12 130527781 130527820 -13754669 - L2 LINE L2 -36 3277 3239 2203 92 7 0 chr12 130528153 130528457 -13754032 - AluY SINE Alu -5 306 1 252 0 0 0 chr12 130528677 130528705 -13753784 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 1993 102 0 18 chr12 130528709 130528992 -13753497 - AluSq SINE Alu -35 278 1 189 0 0 0 chr12 130528992 130529013 -13753476 + (T)n Simple_repeat Simple_repeat 1 21 0 907 244 187 42 chr12 130529051 130529605 -13752884 - L1MC4 LINE L1 -2 8040 7281 1108 151 88 29 chr12 130529622 130529860 -13752629 - MSTB1 LTR MaLR 0 432 181 955 181 28 6 chr12 130530040 130530217 -13752272 - MSTB1 LTR MaLR -249 183 3 2295 83 0 3 chr12 130530735 130531036 -13751453 + AluSp SINE Alu 1 300 -13 1754 108 49 28 chr12 130531049 130531337 -13751152 + AluSq SINE Alu 1 294 -19 280 242 110 22 chr12 130532065 130532156 -13750333 - MER117 DNA MER1_type 0 197 99 584 289 46 23 chr12 130532429 130532602 -13749887 - MIR SINE MIR -76 186 10 200 95 0 71 chr12 130532679 130532721 -13749768 + (GAAAA)n Simple_repeat Simple_repeat 5 43 0 2074 107 7 0 chr12 130534222 130534511 -13747978 - AluY SINE Alu -20 291 1 1933 128 10 0 chr12 130534729 130535018 -13747471 + AluSx SINE Alu 1 292 -20 1865 118 14 10 chr12 130536057 130536345 -13746144 + AluSx SINE Alu 7 295 -17 259 211 133 11 chr12 130538073 130538163 -13744326 - L1ME4a LINE L1 -54 6067 5967 903 189 142 14 chr12 130538173 130538385 -13744104 + Charlie1 DNA MER1_type 1 239 -2522 446 158 158 33 chr12 130538371 130538491 -13743998 + Charlie1 DNA MER1_type 2622 2756 -5 * 24 67 0 0 chr12 130538502 130538547 -13743942 + AT_rich Low_complexity Low_complexity 1 45 0 856 229 18 9 chr12 130538561 130538779 -13743710 - L1ME3 LINE L1 -25 6137 5918 760 103 0 35 chr12 130538788 130538886 -13743603 - AluSq SINE Alu -82 231 136 2120 106 27 0 chr12 130538886 130539187 -13743302 - AluSx SINE Alu -3 309 1 760 103 0 35 chr12 130539187 130539204 -13743285 - AluSq SINE Alu -177 136 120 379 322 23 6 chr12 130539218 130539389 -13743100 - L1ME3 LINE L1 -291 5830 5657 233 286 220 11 chr12 130539780 130539871 -13742618 - MIR SINE MIR -118 144 35 495 320 29 28 chr12 130539936 130540147 -13742342 + MIR SINE MIR 31 241 -21 183 114 0 0 chr12 130540148 130540183 -13742306 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1982 82 25 0 chr12 130540252 130540532 -13741957 - AluSx SINE Alu -24 288 2 21 57 0 0 chr12 130540666 130540701 -13741788 + GC_rich Low_complexity Low_complexity 1 35 0 194 250 60 78 chr12 130541011 130541127 -13741362 - MIR SINE MIR -72 136 23 1652 134 17 24 chr12 130541235 130541526 -13740963 - AluSc SINE Alu -20 289 1 1715 165 3 0 chr12 130541533 130541824 -13740665 - AluSx SINE Alu -19 293 2 1893 145 0 3 chr12 130541841 130542137 -13740352 - AluSx SINE Alu -17 295 1 545 276 90 81 chr12 130542140 130542462 -13740027 + L1ME4a LINE L1 5627 5951 -170 373 118 0 0 chr12 130542471 130542522 -13739967 + U6 snRNA snRNA 1 51 -56 621 241 6 12 chr12 130542553 130542719 -13739770 + AluSg SINE Alu 2 166 -144 46 16 0 16 chr12 130542819 130542830 -13739659 + GC_rich Low_complexity Low_complexity 1 11 -52 207 0 0 0 chr12 130542830 130542853 -13739636 + (G)n Simple_repeat Simple_repeat 1 23 0 46 16 0 16 chr12 130542853 130542905 -13739584 + GC_rich Low_complexity Low_complexity 11 63 0 223 64 0 141 chr12 130542906 130542984 -13739505 + (G)n Simple_repeat Simple_repeat 1 67 0 64 14 0 0 chr12 130542984 130543055 -13739434 + GC_rich Low_complexity Low_complexity 1 71 0 683 86 0 96 chr12 130543055 130543412 -13739077 + (G)n Simple_repeat Simple_repeat 1 322 0 494 183 0 29 chr12 130543425 130543600 -13738889 + G-rich Low_complexity Low_complexity 1 170 0 469 326 50 71 chr12 130543765 130544188 -13738301 + L2 LINE L2 2859 3272 0 1587 160 31 7 chr12 130544392 130544686 -13737803 + AluJo SINE Alu 2 302 -10 1564 154 20 27 chr12 130544711 130544838 -13737651 + AluSx SINE Alu 4 130 -182 1945 140 0 3 chr12 130544838 130545146 -13737343 + AluSq SINE Alu 1 307 -6 1564 154 20 27 chr12 130545146 130545317 -13737172 + AluSx SINE Alu 130 300 -12 1387 124 44 8 chr12 130545317 130545566 -13736923 + L1MA4 LINE L1 6043 6300 0 814 152 8 0 chr12 130546051 130546183 -13736306 + AluJo SINE Alu 2 134 -178 1457 186 19 16 chr12 130546188 130546499 -13735990 + AluJo SINE Alu 1 312 0 641 177 113 0 chr12 130546506 130546630 -13735859 - MLT1E1 LTR MaLR -70 584 447 2290 91 0 0 chr12 130546831 130547138 -13735351 + AluSg SINE Alu 1 307 -3 907 228 31 110 chr12 130547404 130547524 -13734965 + L1ME3 LINE L1 5779 5907 -255 607 199 7 44 chr12 130547524 130547660 -13734829 + FLAM_A SINE Alu 1 131 -2 907 228 31 110 chr12 130547660 130547680 -13734809 + L1ME3 LINE L1 5907 5927 -235 2117 98 0 3 chr12 130547680 130547967 -13734522 + AluSg SINE Alu 1 286 -24 907 228 31 110 chr12 130547967 130548206 -13734283 + L1ME3 LINE L1 5927 6129 -33 32 0 0 0 chr12 130548222 130548254 -13734235 + AT_rich Low_complexity Low_complexity 1 32 0 2271 50 0 53 chr12 130548544 130548864 -13733625 + AluY SINE Alu 1 303 -8 300 261 76 25 chr12 130549027 130549184 -13733305 + MER77 LTR ERV1 410 574 -31 2208 88 0 19 chr12 130549526 130549834 -13732655 + AluSx SINE Alu 1 302 -10 515 190 58 99 chr12 130550154 130550288 -13732201 - HAL1 LINE L1 -1114 1393 1272 1836 155 3 7 chr12 130550288 130550585 -13731904 - AluJo SINE Alu -16 296 1 515 190 58 99 chr12 130550585 130550692 -13731797 - HAL1 LINE L1 -1235 1272 1162 1947 62 4 0 chr12 130551420 130551662 -13730827 - L1PA6 LINE L1 -3 6151 5909 860 76 0 8 chr12 130551663 130551781 -13730708 + L1PA6 LINE L1 5792 5908 -246 1216 140 25 10 chr12 130553011 130553211 -13729278 - MER3 DNA MER1_type -4 205 3 302 267 86 52 chr12 130553214 130553330 -13729159 + MIR SINE MIR 4 123 -139 2195 102 3 0 chr12 130553330 130553634 -13728855 - AluSx SINE Alu -7 305 1 354 307 220 4 chr12 130553653 130553894 -13728595 - L3 LINE CR1 -296 1281 989 959 182 6 0 chr12 130553920 130554079 -13728410 + MER5A DNA MER1_type 29 188 -1 611 328 80 15 chr12 130554218 130554544 -13727945 - L3 LINE CR1 -774 803 457 234 0 0 0 chr12 130555162 130555188 -13727301 + (A)n Simple_repeat Simple_repeat 1 26 0 647 276 129 25 chr12 130557114 130557483 -13725006 - MLT1J2 LTR MaLR 0 446 34 6445 85 4 42 chr12 130558068 130559079 -13723410 + L1P LINE L1 2785 3757 -2389 380 243 0 0 chr12 130559199 130559273 -13723216 - L1MB3 LINE L1 -55 6128 6055 918 88 0 0 chr12 130559273 130559398 -13723091 - AluSg/x SINE Alu -4 308 184 1659 120 79 4 chr12 130559665 130559932 -13722557 - AluSq SINE Alu -26 287 1 6050 168 21 4 chr12 130560473 130561526 -13720963 - Tigger1 DNA MER2_type -1283 1135 65 22 0 0 0 chr12 130561713 130561735 -13720754 + AT_rich Low_complexity Low_complexity 1 22 0 712 315 22 9 chr12 130562027 130562259 -13720230 - MIR SINE MIR 0 262 28 33 25 0 0 chr12 130563706 130563746 -13718743 + AT_rich Low_complexity Low_complexity 1 40 0 236 301 32 41 chr12 130563765 130563888 -13718601 + L2 LINE L2 3165 3286 -27 333 0 0 0 chr12 130563888 130563925 -13718564 + (TG)n Simple_repeat Simple_repeat 2 38 0 258 153 0 0 chr12 130563925 130563984 -13718505 + GA-rich Low_complexity Low_complexity 2 60 0 247 261 225 9 chr12 130563987 130564098 -13718391 + L2 LINE L2 3178 3312 -1 5689 50 3 30 chr12 130565106 130565842 -13716647 - L1PA7 LINE L1 -3 6151 5436 489 50 0 0 chr12 130565842 130565902 -13716587 + L1P LINE L1 5365 5424 -748 709 246 23 6 chr12 130566872 130567047 -13715442 - AluJo SINE Alu -13 299 122 360 278 101 25 chr12 130567101 130567299 -13715190 - L1 LINE L1 -2368 3778 3566 185 222 0 48 chr12 130567663 130567726 -13714763 - L2 LINE L2 -1099 2215 2156 21 0 0 0 chr12 130569102 130569123 -13713366 + GC_rich Low_complexity Low_complexity 1 21 0 186 71 0 0 chr12 130569493 130569521 -13712968 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 988 196 16 0 chr12 130569657 130569841 -13712648 - MER58A DNA MER1_type 0 224 38 864 183 75 21 chr12 130569866 130570107 -13712382 - Charlie5 DNA MER1_type -27 2585 2332 2118 123 7 3 chr12 130570740 130571042 -13711447 - AluSg SINE Alu -7 303 1 434 216 9 20 chr12 130572588 130572712 -13709777 + MIR SINE MIR 46 167 -41 2312 99 23 0 chr12 130572961 130573264 -13709225 + AluSx SINE Alu 1 310 -2 2273 76 0 4 chr12 130573344 130573621 -13708868 - AluSc SINE Alu -33 276 1 479 248 174 32 chr12 130574352 130574570 -13707919 - L2 LINE L2 0 3313 3065 835 164 0 8 chr12 130574583 130574711 -13707778 - FLAM_C SINE Alu -16 127 1 780 241 78 19 chr12 130574711 130574951 -13707538 - L2 LINE L2 -234 3079 2813 2478 56 0 37 chr12 130574951 130575273 -13707216 + AluY SINE Alu 1 310 -1 780 241 78 19 chr12 130575273 130575405 -13707084 - L2 LINE L2 -500 2813 2690 1718 172 0 23 chr12 130575407 130575709 -13706780 + AluJo SINE Alu 1 295 -17 2079 93 53 20 chr12 130576195 130576495 -13705994 - AluSx SINE Alu -2 310 1 276 339 127 0 chr12 130576590 130576708 -13705781 - L2 LINE L2 -1 3271 3139 2325 97 0 0 chr12 130576930 130577230 -13705259 + AluSx SINE Alu 1 300 -12 1774 184 0 0 chr12 130577966 130578260 -13704229 - AluJo SINE Alu -18 294 1 302 184 51 71 chr12 130578299 130578321 -13704168 + L1ME1 LINE L1 6071 6092 -74 2220 124 3 0 chr12 130578321 130578619 -13703870 + AluSx SINE Alu 1 299 -13 302 184 51 71 chr12 130578619 130578694 -13703795 + L1ME1 LINE L1 6092 6166 0 2498 83 0 0 chr12 130578765 130579067 -13703422 - AluSc SINE Alu -7 302 1 815 153 0 29 chr12 130579070 130579207 -13703282 - AluJo/FLAM SINE Alu -169 133 1 344 204 91 0 chr12 130579240 130579328 -13703161 + L1ME2 LINE L1 6068 6163 -1 1989 94 4 0 chr12 130579547 130579801 -13702688 + AluSp SINE Alu 1 255 -58 1532 122 9 0 chr12 130579810 130580024 -13702465 + AluSq SINE Alu 1 216 -97 2119 117 21 0 chr12 130580124 130580414 -13702075 + AluSx SINE Alu 4 299 -13 29 0 0 0 chr12 130580415 130580444 -13702045 + AT_rich Low_complexity Low_complexity 1 29 0 2335 90 3 3 chr12 130580617 130580918 -13701571 - AluSc SINE Alu -8 301 1 2593 65 7 0 chr12 130581587 130581896 -13700593 - AluY SINE Alu 0 311 1 860 250 39 25 chr12 130582103 130582387 -13700102 + L2 LINE L2 2931 3218 -95 215 167 19 19 chr12 130582983 130583037 -13699452 + (CCG)n Simple_repeat Simple_repeat 2 55 0 22 56 0 0 chr12 130583203 130583239 -13699250 + GC_rich Low_complexity Low_complexity 1 36 0 195 139 0 0 chr12 130583287 130583323 -13699166 + (CAAG)n Simple_repeat Simple_repeat 3 38 0 23 0 0 0 chr12 130583361 130583384 -13699105 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr12 130583487 130583510 -13698979 + GC_rich Low_complexity Low_complexity 1 23 0 244 343 88 15 chr12 130584599 130584803 -13697686 + MIR SINE MIR 3 221 -41 2311 105 0 0 chr12 130585669 130585975 -13696514 - AluSg SINE Alu -4 306 1 275 271 104 0 chr12 130586059 130586155 -13696334 - MIR SINE MIR -69 193 88 1784 151 3 50 chr12 130586343 130586660 -13695829 - AluSx SINE Alu -9 303 2 1620 162 63 0 chr12 130586672 130586956 -13695533 - AluJb SINE Alu -10 302 1 389 193 68 0 chr12 130587131 130587219 -13695270 + L1MC5 LINE L1 7820 7913 -48 2293 93 13 7 chr12 130587375 130587676 -13694813 - AluSx SINE Alu -8 304 2 227 301 44 35 chr12 130588483 130588596 -13693893 - MIR SINE MIR -131 131 18 300 293 193 14 chr12 130588617 130588829 -13693660 + L2 LINE L2 2587 2836 -478 1829 141 36 46 chr12 130588950 130589256 -13693233 - AluSx SINE Alu -9 303 1 2447 59 0 0 chr12 130589557 130589844 -13692645 - AluY SINE Alu -24 287 1 2145 130 0 17 chr12 130590491 130590792 -13691697 - AluSg SINE Alu -14 296 1 237 222 0 19 chr12 130591513 130591567 -13690922 + MIR SINE MIR 160 212 -50 2192 110 7 0 chr12 130591840 130592140 -13690349 - AluSq SINE Alu -11 302 1 2058 110 0 3 chr12 130592311 130592626 -13689863 - AluSx SINE Alu 0 314 1 2215 104 3 3 chr12 130592941 130593248 -13689241 - AluSp SINE Alu -6 307 1 1758 64 0 0 chr12 130593918 130594121 -13688368 - AluY SINE Alu -108 203 1 2558 63 0 0 chr12 130594288 130594591 -13687898 - AluY SINE Alu -8 303 1 26 0 0 0 chr12 130596504 130596530 -13685959 + AT_rich Low_complexity Low_complexity 1 26 0 2382 76 0 7 chr12 130596678 130596979 -13685510 - AluSc SINE Alu -10 299 1 2223 109 0 10 chr12 130597019 130597322 -13685167 - AluSp SINE Alu -12 301 2 821 245 55 91 chr12 130597545 130598004 -13684485 - MLT1H LTR MaLR 0 549 1 2018 134 0 17 chr12 130598173 130598471 -13684018 + AluSx SINE Alu 1 293 -19 3421 172 40 40 chr12 130598473 130598911 -13683578 - L1MB8 LINE L1 -17 6161 5721 2143 117 0 0 chr12 130598911 130599192 -13683297 + AluSx SINE Alu 1 281 -31 3421 172 40 40 chr12 130599192 130599493 -13682996 - L1MB8 LINE L1 -456 5722 5422 759 139 263 53 chr12 130599943 130600058 -13682431 - MER33 DNA MER1_type -2263 322 233 1825 103 103 0 chr12 130600058 130600310 -13682179 + AluSg SINE Alu 17 294 -16 759 139 263 53 chr12 130600310 130600460 -13682029 - MER33 DNA MER1_type -2352 233 1 23 0 0 0 chr12 130601126 130601149 -13681340 + AT_rich Low_complexity Low_complexity 1 23 0 2208 86 41 0 chr12 130601149 130601439 -13681050 + AluSp SINE Alu 1 302 -11 292 237 17 0 chr12 130601528 130601587 -13680902 + Charlie8 DNA MER1_type 2357 2416 -1 275 236 50 50 chr12 130602554 130602694 -13679795 - L1ME4a LINE L1 -11 6110 5971 23 0 0 0 chr12 130602723 130602746 -13679743 + AT_rich Low_complexity Low_complexity 1 23 0 2385 90 3 0 chr12 130603168 130603468 -13679021 - AluSp SINE Alu -12 301 1 504 234 107 40 chr12 130603507 130603793 -13678696 - L1ME3 LINE L1 -221 5945 5626 346 256 101 105 chr12 130603790 130603952 -13678537 - L1ME3 LINE L1 -1005 5141 4978 * 2337 70 0 7 chr12 130603952 130604265 -13678224 - AluY SINE Alu 0 311 1 346 256 101 105 chr12 130604265 130604359 -13678130 - L1ME3 LINE L1 -1168 4978 4885 714 217 14 7 chr12 130604396 130604539 -13677950 - FRAM SINE Alu -31 145 2 825 117 69 21 chr12 130604849 130604994 -13677495 - L1MB3 LINE L1 -8 6175 6024 515 102 125 11 chr12 130604994 130605082 -13677407 - Tigger7 DNA MER2_type -1 2486 2389 * 1134 211 73 40 chr12 130605080 130605327 -13677162 - Tigger7 DNA MER2_type -466 267 13 3667 172 34 56 chr12 130605330 130605789 -13676700 - L1MB3 LINE L1 -144 6039 5572 2215 111 10 0 chr12 130605789 130606095 -13676394 - AluSx SINE Alu -1 311 3 3667 172 34 56 chr12 130606095 130606485 -13676004 - L1MB3 LINE L1 -611 5572 5223 2136 102 3 20 chr12 130606485 130606779 -13675710 - AluY SINE Alu -22 289 1 3667 172 34 56 chr12 130606779 130607060 -13675429 - L1MB3 LINE L1 -960 5223 4937 280 260 170 20 chr12 130607460 130607626 -13674863 - MIR SINE MIR -58 204 18 387 279 25 8 chr12 130607642 130607764 -13674725 - MER103 DNA DNA -7 159 36 2482 84 3 0 chr12 130608147 130608455 -13674034 - AluSp SINE Alu -4 309 1 1113 124 19 6 chr12 130609251 130609412 -13673077 - AluSg/x SINE Alu -13 299 137 3087 212 113 61 chr12 130609413 130609476 -13673013 - L1MB3 LINE L1 -2291 3855 3797 2332 106 3 0 chr12 130609476 130609788 -13672701 - AluSq SINE Alu 0 313 1 3087 212 113 61 chr12 130609788 130610443 -13672046 - L1MB3 LINE L1 -2349 3797 3177 294 29 0 0 chr12 130610443 130610478 -13672011 + (TG)n Simple_repeat Simple_repeat 2 36 0 3087 212 113 61 chr12 130610478 130610641 -13671848 - L1MB3 LINE L1 -2969 3177 3024 2601 63 0 13 chr12 130610641 130610956 -13671533 - AluY SINE Alu 0 311 1 3087 212 113 61 chr12 130610956 130611247 -13671242 - L1MB3 LINE L1 -3122 3024 2620 892 251 132 13 chr12 130611320 130611641 -13670848 - L1MEc LINE L1 -3913 2483 2093 1485 127 18 5 chr12 130611641 130611862 -13670627 - AluSg/x SINE Alu -7 305 82 892 251 132 13 chr12 130611862 130611987 -13670502 - L1MEc LINE L1 -4303 2093 1984 35 24 0 0 chr12 130611988 130612030 -13670459 + AT_rich Low_complexity Low_complexity 1 42 0 1084 266 172 23 chr12 130612031 130612493 -13669996 - MLT1G3 LTR MaLR 0 595 35 186 71 0 0 chr12 130612505 130612533 -13669956 + (CA)n Simple_repeat Simple_repeat 1 28 0 289 266 76 0 chr12 130612619 130612698 -13669791 - MLT1G3 LTR MaLR -510 85 1 2996 271 141 30 chr12 130612703 130612810 -13669679 - L1MEc LINE L1 -4450 1946 1852 2278 116 0 0 chr12 130612810 130613120 -13669369 - AluSx SINE Alu -2 310 1 2996 271 141 30 chr12 130613120 130613393 -13669096 - L1MEc LINE L1 -4544 1852 1611 198 0 0 0 chr12 130613393 130613415 -13669074 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2201 101 3 0 chr12 130613415 130613697 -13668792 - AluSg SINE Alu -25 285 3 2996 271 141 30 chr12 130613697 130614999 -13667490 - L1MEc LINE L1 -4784 1612 81 1529 173 72 42 chr12 130615067 130615199 -13667290 - MER2 DNA MER2_type 0 345 218 1268 125 88 9 chr12 130615199 130615415 -13667074 + MER46A DNA MER2_type 1 233 -3 1529 173 72 42 chr12 130615415 130615519 -13666970 - MER2 DNA MER2_type -127 218 119 2188 136 0 0 chr12 130615519 130615821 -13666668 - AluSq SINE Alu -11 302 1 1529 173 72 42 chr12 130615821 130615918 -13666571 - MER2 DNA MER2_type -226 119 1 2502 165 41 23 chr12 130616012 130616136 -13666353 - L1MB3 LINE L1 -7 6176 6056 1864 124 4 11 chr12 130616136 130616411 -13666078 - AluSx SINE Alu -4 308 36 2502 165 41 23 chr12 130616411 130616800 -13665689 - L1MB3 LINE L1 -127 6056 5654 2231 98 24 0 chr12 130616832 130617128 -13665361 - AluSp SINE Alu -10 303 1 1767 266 125 2 chr12 130617679 130618277 -13664212 + MER20B DNA MER1_type 1 672 -111 2141 105 18 0 chr12 130618512 130618789 -13663700 + AluSc SINE Alu 1 282 -27 879 168 0 26 chr12 130619021 130619176 -13663313 - AluJb SINE Alu -13 299 149 2230 89 10 7 chr12 130619376 130619678 -13662811 - AluSc SINE Alu -6 303 1 2593 65 7 0 chr12 130620347 130620656 -13661833 - AluY SINE Alu 0 311 1 860 250 39 25 chr12 130620863 130621147 -13661342 + L2 LINE L2 2931 3218 -95 25 0 0 0 chr12 130621783 130621808 -13660681 + GC_rich Low_complexity Low_complexity 1 25 0 454 228 81 24 chr12 130622464 130622587 -13659902 - MIR SINE MIR -70 192 63 2159 122 0 3 chr12 130622703 130622999 -13659490 - AluSx SINE Alu -17 295 1 22 0 0 0 chr12 130623031 130623053 -13659436 + AT_rich Low_complexity Low_complexity 1 22 0 995 182 0 0 chr12 130623056 130623215 -13659274 - AluJb SINE Alu -15 297 139 522 230 44 7 chr12 130623249 130623384 -13659105 - Charlie8 DNA MER1_type -2178 239 100 257 283 80 9 chr12 130623657 130623770 -13658719 - LTR67 LTR ERVL -8 549 429 914 188 6 29 chr12 130623934 130624104 -13658385 - FRAM SINE Alu 0 166 1 413 274 114 5 chr12 130624233 130624434 -13658055 + HsTC2 DNA Tc2 670 892 -1006 296 288 90 9 chr12 130624774 130624885 -13657604 - MER5A DNA MER1_type -7 182 63 951 207 46 36 chr12 130624909 130625238 -13657251 - MER1A DNA MER1_type -4 525 194 354 256 7 38 chr12 130625238 130625411 -13657078 + T-rich Low_complexity Low_complexity 1 167 0 1253 133 107 9 chr12 130625511 130625768 -13656721 + AluSc SINE Alu 33 311 0 672 212 6 81 chr12 130625768 130625881 -13656608 + L1MEc LINE L1 2007 2127 -4269 1962 138 3 3 chr12 130625881 130626177 -13656312 + AluSq SINE Alu 1 296 -17 672 212 6 81 chr12 130626177 130626384 -13656105 + L1MEc LINE L1 2127 2303 -4093 344 105 0 158 chr12 130626390 130626466 -13656023 + Alu SINE Alu 2 53 -248 335 324 101 40 chr12 130626466 130626744 -13655745 - L1M2 LINE L1 -5847 1002 708 27 49 0 0 chr12 130626839 130626880 -13655609 + GC_rich Low_complexity Low_complexity 1 41 0 2020 103 3 85 chr12 130627175 130627506 -13654983 + AluSx SINE Alu 1 304 -8 668 212 110 0 chr12 130627510 130627656 -13654833 + FRAM SINE Alu 2 163 -13 823 101 54 23 chr12 130627665 130627794 -13654695 + AluJo/FLAM SINE Alu 1 133 -169 1889 105 10 80 chr12 130627797 130628111 -13654378 + AluSq SINE Alu 1 292 -21 563 268 7 7 chr12 130628225 130628378 -13654111 + MIR SINE MIR 110 262 0 277 271 0 0 chr12 130628415 130628485 -13654004 + L1MB8 LINE L1 5521 5590 -531 2175 79 35 48 chr12 130628747 130629062 -13653427 - AluY SINE Alu 0 311 1 1805 149 30 0 chr12 130629081 130629349 -13653140 - AluJo SINE Alu -30 282 7 1920 135 87 22 chr12 130629369 130629784 -13652705 + L1MB8 LINE L1 5662 6103 -75 233 250 0 18 chr12 130631800 130631856 -13650633 - MIR SINE MIR -17 245 191 203 200 20 40 chr12 130631958 130632008 -13650481 + L2 LINE L2 3219 3267 -5 788 134 0 8 chr12 130632307 130632426 -13650063 + FLAM_C SINE Alu 1 118 -15 27 29 0 0 chr12 130632428 130632462 -13650027 + AT_rich Low_complexity Low_complexity 1 34 0 370 235 174 13 chr12 130632540 130632689 -13649800 + MER5B DNA MER1_type 5 177 -1 1319 150 18 44 chr12 130632874 130633100 -13649389 + AluJo SINE Alu 1 220 -92 1479 232 66 78 chr12 130634783 130635464 -13647025 - L1ME3A LINE L1 -104 6066 5394 2168 114 7 0 chr12 130636358 130636657 -13645832 + AluSx SINE Alu 1 301 -11 2295 129 0 0 chr12 130636729 130637038 -13645451 + AluSx SINE Alu 1 309 -3 2176 107 10 0 chr12 130638013 130638304 -13644185 - AluSp SINE Alu -17 296 3 304 149 40 0 chr12 130638472 130638546 -13643943 - L1MB8 LINE L1 -1 6177 6101 433 258 88 6 chr12 130638997 130639156 -13643333 - L1ME LINE L1 -448 5673 5502 485 254 207 21 chr12 130639175 130639455 -13643034 - L2 LINE L2 -11 3302 2971 2342 84 7 0 chr12 130639609 130639905 -13642584 + AluSc SINE Alu 5 302 -7 400 200 104 9 chr12 130639917 130640032 -13642457 + MER3 DNA MER1_type 11 136 -73 1541 166 49 39 chr12 130640032 130640413 -13642076 + L1M4 LINE L1 5026 5428 -746 1478 150 105 15 chr12 130640413 130640680 -13641809 + AluJb SINE Alu 1 291 -21 1541 166 49 39 chr12 130640680 130640831 -13641658 + L1M4 LINE L1 5428 5576 -598 532 167 46 9 chr12 130640831 130640939 -13641550 + MLT1B LTR MaLR 263 374 -16 4220 224 72 99 chr12 130640969 130641577 -13640912 - L1MEc LINE L1 -3377 2838 2215 2300 113 0 0 chr12 130641577 130641879 -13640610 - AluSg SINE Alu -6 304 3 4220 224 72 99 chr12 130641879 130642321 -13640168 - L1MEc LINE L1 -4000 2215 1762 631 182 0 36 chr12 130642321 130642431 -13640058 - FLAM_A SINE Alu -36 106 1 4220 224 72 99 chr12 130642431 130643279 -13639210 - L1MEc LINE L1 -4453 1762 892 2195 118 7 0 chr12 130643279 130643575 -13638914 + AluSx SINE Alu 1 298 -14 4220 224 72 99 chr12 130643575 130644079 -13638410 - L1MEc LINE L1 -5323 892 427 2098 98 11 0 chr12 130644079 130644386 -13638103 + AluSg SINE Alu 5 314 0 4220 224 72 99 chr12 130644386 130644767 -13637722 - L1MEc LINE L1 -5788 427 37 2195 128 11 22 chr12 130646250 130646617 -13635872 - MER47A DNA MER2_type 0 366 4 2150 147 0 0 chr12 130647406 130647718 -13634771 + AluSx SINE Alu 1 312 0 286 280 65 0 chr12 130648026 130648119 -13634370 - MIR SINE MIR -1 261 163 2891 151 34 24 chr12 130648167 130648751 -13633738 + LTR49 LTR ERV1 1 590 -5 240 261 0 0 chr12 130649533 130649621 -13632868 + L1MC4 LINE L1 6615 6702 -1340 2181 113 3 3 chr12 130649621 130649922 -13632567 - AluSx SINE Alu -11 301 1 210 135 0 27 chr12 130650154 130650191 -13632298 - L2 LINE L2 -4 3309 3274 41 21 0 0 chr12 130650720 130650768 -13631721 + AT_rich Low_complexity Low_complexity 1 48 0 234 178 0 0 chr12 130651427 130651472 -13631017 + L1MB8 LINE L1 2360 2404 -3742 4008 172 52 20 chr12 130651552 130652441 -13630048 + L1MB8 LINE L1 5260 6176 -2 2570 182 96 59 chr12 130652439 130653353 -13629136 + L1M4 LINE L1 3855 4802 -1344 * 899 169 6 19 chr12 130653385 130653545 -13628944 - FRAM SINE Alu -14 162 5 1264 187 10 76 chr12 130653553 130653754 -13628735 + L1M4 LINE L1 4855 5068 -1116 2302 88 13 3 chr12 130653754 130654061 -13628428 + AluY SINE Alu 1 310 -1 1264 187 10 76 chr12 130654061 130654451 -13628038 + L1M4 LINE L1 5068 5484 -700 452 107 0 0 chr12 130654474 130654549 -13627940 + L1MB4 LINE L1 6106 6180 0 2416 84 6 0 chr12 130654581 130654892 -13627597 + AluSp SINE Alu 1 313 0 497 207 107 7 chr12 130654941 130655081 -13627408 + L1M4 LINE L1 3495 3648 -2498 297 264 61 143 chr12 130655143 130655275 -13627214 + MIR3 SINE MIR 20 128 -80 1572 167 83 0 chr12 130655275 130655563 -13626926 - AluJb SINE Alu 0 312 1 297 264 61 143 chr12 130655563 130655629 -13626860 + MIR3 SINE MIR 128 198 -10 272 300 64 0 chr12 130655670 130655780 -13626709 + L1ME LINE L1 5547 5663 -458 2375 92 0 0 chr12 130656251 130656555 -13625934 + AluY SINE Alu 1 304 -7 333 165 38 63 chr12 130656990 130657069 -13625420 - MER116 DNA Mariner -1 79 3 1926 145 3 33 chr12 130657165 130657469 -13625020 - AluJo SINE Alu -17 295 1 334 278 134 46 chr12 130658495 130658711 -13623778 + L2 LINE L2 2262 2496 -818 352 232 53 32 chr12 130658896 130658991 -13623498 - L2 LINE L2 -5 3267 3171 2264 106 10 0 chr12 130659327 130659619 -13622870 - AluSx SINE Alu -17 295 1 381 290 122 41 chr12 130659682 130659903 -13622586 - L2 LINE L2 -1057 2257 2019 581 208 191 0 chr12 130659923 130660091 -13622398 + MIR SINE MIR 46 245 -17 247 231 167 65 chr12 130660107 130660406 -13622083 - L2 LINE L2 -1321 1993 1617 2283 76 3 20 chr12 130660506 130660809 -13621680 - AluSq SINE Alu -14 299 2 356 235 104 82 chr12 130660813 130660861 -13621628 + L1MC5 LINE L1 7703 7748 -213 1282 195 89 31 chr12 130660861 130661210 -13621279 + MER93b LTR ERV1 5 373 0 356 235 104 82 chr12 130661210 130661344 -13621145 + L1MC5 LINE L1 7748 7889 -72 1243 285 70 36 chr12 130661820 130662165 -13620324 - L1MC4a LINE L1 -1675 6133 5801 216 0 0 0 chr12 130662165 130662189 -13620300 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1243 285 70 36 chr12 130662189 130662538 -13619951 - L1MC4a LINE L1 -2007 5801 5415 22 0 0 0 chr12 130662545 130662567 -13619922 + AT_rich Low_complexity Low_complexity 1 22 0 2034 118 0 11 chr12 130662906 130663217 -13619272 - AluSx SINE Alu 0 308 1 1285 173 5 5 chr12 130663696 130663916 -13618573 - AluJo SINE Alu -8 304 85 1819 143 14 31 chr12 130664195 130664488 -13618001 + AluJo SINE Alu 1 288 -24 5433 173 86 34 chr12 130665882 130667265 -13615224 - Charlie1a DNA MER1_type 0 1455 1 2550 58 0 7 chr12 130667494 130667804 -13614685 - AluY SINE Alu -3 308 1 21 36 0 0 chr12 130667926 130667954 -13614535 + AT_rich Low_complexity Low_complexity 1 28 0 844 165 8 0 chr12 130667999 130668132 -13614357 + AluJo SINE Alu 1 134 -178 2496 168 13 36 chr12 130668923 130669476 -13613013 + L1MB4 LINE L1 5637 6176 -4 647 240 150 43 chr12 130670542 130670888 -13611601 + L2 LINE L2 1853 2235 -1079 267 219 41 27 chr12 130670939 130671012 -13611477 - MIR SINE MIR -92 170 97 2468 68 0 0 chr12 130671066 130671360 -13611129 - AluY SINE Alu -17 294 1 1765 164 13 27 chr12 130671725 130672024 -13610465 - AluJb SINE Alu -17 295 1 241 372 63 26 chr12 130672937 130673128 -13609361 - L2 LINE L2 -606 2708 2511 2338 89 10 0 chr12 130673229 130673532 -13608957 + AluSp SINE Alu 1 306 -7 487 66 26 0 chr12 130674531 130674607 -13607882 + (TAA)n Simple_repeat Simple_repeat 3 80 0 598 271 32 61 chr12 130674613 130674860 -13607629 - MIR SINE MIR -20 242 3 1695 174 40 62 chr12 130674954 130675007 -13607482 + L1M4 LINE L1 2712 2765 -3381 2297 98 3 0 chr12 130675007 130675302 -13607187 - AluSx SINE Alu -16 296 1 1695 174 40 62 chr12 130675302 130675719 -13606770 + L1M4 LINE L1 2765 3172 -2974 * 1997 197 114 28 chr12 130675714 130675975 -13606514 + L1M4 LINE L1 4599 4836 -1310 1792 142 3 26 chr12 130675975 130676278 -13606211 - AluJo SINE Alu -14 298 3 1997 197 114 28 chr12 130676278 130676530 -13605959 + L1M4 LINE L1 4836 5174 -972 2148 140 0 0 chr12 130676530 130676837 -13605652 + AluSx SINE Alu 1 307 -5 1997 197 114 28 chr12 130676837 130676927 -13605562 + L1M4 LINE L1 5174 5255 -891 2032 147 3 0 chr12 130676929 130677228 -13605261 + AluSq SINE Alu 1 300 -13 473 300 86 32 chr12 130677300 130677520 -13604969 - L2 LINE L2 -717 2597 2366 252 0 0 0 chr12 130677520 130677548 -13604941 + (GA)n Simple_repeat Simple_repeat 1 28 0 2513 177 62 30 chr12 130677784 130678011 -13604478 + MLT2B1 LTR ERVL 1 219 -301 180 0 0 0 chr12 130678011 130678031 -13604458 + (TC)n Simple_repeat Simple_repeat 1 20 0 2513 177 62 30 chr12 130678031 130678307 -13604182 + MLT2B1 LTR ERVL 219 520 0 363 214 0 45 chr12 130679027 130679116 -13603373 - MIR SINE MIR -14 248 164 2295 76 24 3 chr12 130679331 130679620 -13602869 + AluSp SINE Alu 1 295 -18 903 150 0 8 chr12 130680490 130680664 -13601825 + FLAM_C SINE Alu 2 174 0 252 0 0 0 chr12 130680710 130680738 -13601751 + (TG)n Simple_repeat Simple_repeat 2 29 0 729 259 144 96 chr12 130683046 130683525 -13598964 + MLT1H LTR MaLR 21 522 -73 1396 245 25 67 chr12 130683525 130683970 -13598519 + L1MD2 LINE L1 5924 6349 -10 296 159 0 0 chr12 130683980 130684032 -13598457 + MLT1H1 LTR MaLR 496 547 -2 380 181 291 0 chr12 130684262 130684389 -13598100 + MER104 DNA Tc2 16 179 -1 248 245 284 0 chr12 130684641 130684743 -13597746 + MLT1J LTR MaLR 1 131 -380 1171 114 6 0 chr12 130684817 130684983 -13597506 + AluSg/x SINE Alu 136 302 -8 279 287 56 0 chr12 130685445 130685553 -13596936 + MLT1K LTR MaLR 457 570 -18 6898 35 8 3 chr12 130685671 130686449 -13596040 + L1PA3 LINE L1 5373 6154 -1 2407 138 110 53 chr12 130686646 130686927 -13595562 + L1MB7 LINE L1 5545 5809 -375 2225 111 3 0 chr12 130686927 130687233 -13595256 + AluSg SINE Alu 1 307 -3 2407 138 110 53 chr12 130687233 130687495 -13594994 + L1MB7 LINE L1 5809 6119 -65 1629 159 4 11 chr12 130687510 130687786 -13594703 + AluJb SINE Alu 32 305 -7 582 114 76 0 chr12 130687787 130687866 -13594623 + AluSg/x SINE Alu 195 279 -33 234 0 0 0 chr12 130687866 130687892 -13594597 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2134 125 3 0 chr12 130687973 130688270 -13594219 + AluSp SINE Alu 1 298 -15 23 33 0 0 chr12 130688345 130688375 -13594114 + AT_rich Low_complexity Low_complexity 1 30 0 1886 192 16 25 chr12 130689413 130689777 -13592712 - MLT1A1 LTR MaLR -4 361 1 1083 267 193 79 chr12 130690237 130690602 -13591887 + L2 LINE L2 1784 2106 -1207 1988 115 3 17 chr12 130690602 130690897 -13591592 + AluSx SINE Alu 1 291 -21 1083 267 193 79 chr12 130690897 130691623 -13590866 + L2 LINE L2 2106 2996 -317 251 280 104 16 chr12 130692634 130692759 -13589730 + L2 LINE L2 2944 3079 -234 387 0 0 0 chr12 130692789 130692832 -13589657 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1362 153 9 5 chr12 130692832 130693048 -13589441 - AluSg/x SINE Alu -24 288 72 363 255 137 0 chr12 130693071 130693173 -13589316 + L2 LINE L2 3198 3313 0 21 0 0 0 chr12 130693620 130693641 -13588848 + AT_rich Low_complexity Low_complexity 1 21 0 1931 150 0 3 chr12 130694207 130694516 -13587973 - AluJb SINE Alu 0 308 1 801 172 0 15 chr12 130694519 130694653 -13587836 - AluJo/FLAM SINE Alu -170 132 1 937 182 19 53 chr12 130695913 130696122 -13586367 + AluJo SINE Alu 110 311 -1 812 99 9 0 chr12 130697330 130697441 -13585048 + FLAM_A SINE Alu 31 142 0 1827 176 178 11 chr12 130697561 130697994 -13584495 - MLT1D LTR MaLR 0 505 1 1332 194 81 45 chr12 130698314 130698527 -13583962 - MER119 DNA MER1_type 0 583 379 2063 137 0 0 chr12 130698527 130698826 -13583663 - AluJb SINE Alu -13 299 1 1332 194 81 45 chr12 130698826 130699059 -13583430 - MER119 DNA MER1_type -204 379 24 488 127 42 31 chr12 130699219 130699827 -13582662 + (TA)n Simple_repeat Simple_repeat 1 614 0 2320 85 0 7 chr12 130699827 130700120 -13582369 - AluSq SINE Alu -22 291 1 881 229 16 27 chr12 130700553 130700741 -13581748 - MER5A DNA MER1_type 0 189 4 579 29 0 0 chr12 130700890 130700959 -13581530 + (CA)n Simple_repeat Simple_repeat 1 69 0 2133 117 3 25 chr12 130702339 130702656 -13579833 + AluSx SINE Alu 1 310 -2 390 209 127 27 chr12 130702878 130702911 -13579578 + MLT1L LTR MaLR 123 151 -464 1187 170 9 28 chr12 130702911 130703123 -13579366 + MER3 DNA MER1_type 1 208 -1 390 209 127 27 chr12 130703123 130703199 -13579290 + MLT1L LTR MaLR 151 243 -372 377 267 34 41 chr12 130703255 130703401 -13579088 + MLT1L LTR MaLR 336 480 -135 234 0 0 0 chr12 130703437 130703463 -13579026 + (T)n Simple_repeat Simple_repeat 1 26 0 237 103 0 0 chr12 130703465 130703504 -13578985 + Alu SINE Alu 260 298 -2 5908 77 18 0 chr12 130704187 130704923 -13577566 + L1PA10 LINE L1 5420 6168 0 23 33 0 0 chr12 130705086 130705116 -13577373 + AT_rich Low_complexity Low_complexity 1 30 0 1979 118 76 0 chr12 130705130 130705419 -13577070 + AluSq SINE Alu 1 311 -2 308 267 86 106 chr12 130705483 130705738 -13576751 + HAL1 LINE L1 1057 1306 -1201 268 184 41 0 chr12 130705823 130705872 -13576617 - L1ME LINE L1 -531 5635 5585 1175 171 33 69 chr12 130706041 130706286 -13576203 - MER46A DNA MER2_type 0 236 1 2080 89 46 0 chr12 130706608 130706889 -13575600 + AluSx SINE Alu 1 294 -18 1286 150 182 36 chr12 130706894 130707147 -13575342 + AluJo SINE Alu 2 291 -11 694 238 101 62 chr12 130707384 130707691 -13574798 + MER5C DNA MER1_type 1 319 -5 1198 167 33 37 chr12 130707692 130707767 -13574722 - MER58A DNA MER1_type -2197 223 149 727 208 79 112 chr12 130707767 130708123 -13574366 + MER2 DNA MER2_type 1 344 0 1198 167 33 37 chr12 130708123 130708262 -13574227 - MER58A DNA MER1_type -2271 149 10 732 155 160 11 chr12 130708991 130709172 -13573317 - Charlie1a DNA MER1_type -1 1454 1247 2539 227 68 78 chr12 130709187 130709998 -13572491 - MER21B LTR ERV1 -57 806 4 2259 120 0 0 chr12 130710000 130710299 -13572190 + AluSx SINE Alu 1 299 -13 1310 203 28 7 chr12 130710300 130710586 -13571903 - Charlie1a DNA MER1_type -200 1255 964 1151 183 34 115 chr12 130710587 130710909 -13571580 - AluJo SINE Alu -16 296 1 3204 187 171 24 chr12 130710913 130711184 -13571305 - Charlie1a DNA MER1_type -1792 969 739 2155 125 10 0 chr12 130711184 130711487 -13571002 + AluSq SINE Alu 1 306 -7 3204 187 171 24 chr12 130711487 130712059 -13570430 - Charlie1a DNA MER1_type -2022 739 2 669 273 163 5 chr12 130712280 130712489 -13570000 + MIR SINE MIR 2 243 -19 3624 129 21 12 chr12 130712685 130713203 -13569286 + MER1A DNA MER1_type 1 523 -4 315 279 90 9 chr12 130713225 130713336 -13569153 + MER5A DNA MER1_type 63 182 -7 853 280 94 11 chr12 130713676 130714047 -13568442 - HsTC2 DNA Tc2 -1006 892 491 244 230 29 122 chr12 130714108 130714247 -13568242 - HsTC2 DNA Tc2 -1658 240 115 2121 108 3 10 chr12 130714311 130714606 -13567883 + AluSc SINE Alu 1 293 -16 433 288 92 39 chr12 130714607 130714888 -13567601 - L2 LINE L2 -607 2707 2412 25 31 0 0 chr12 130715122 130715154 -13567335 + AT_rich Low_complexity Low_complexity 1 32 0 2119 164 74 77 chr12 130715271 130715540 -13566949 - L1MB7 LINE L1 -357 5827 5559 1981 110 16 38 chr12 130715540 130715858 -13566631 - AluSx SINE Alu -1 311 1 2119 164 74 77 chr12 130715858 130716026 -13566463 - L1MB7 LINE L1 -625 5559 5392 279 0 0 0 chr12 130716026 130716057 -13566432 + (TG)n Simple_repeat Simple_repeat 2 32 0 2360 89 0 0 chr12 130716062 130716354 -13566135 - AluSc SINE Alu -17 292 1 2119 164 74 77 chr12 130716354 130716448 -13566041 - L1MB7 LINE L1 -796 5388 5295 2655 45 3 0 chr12 130716448 130716758 -13565731 - AluY SINE Alu 0 311 1 2119 164 74 77 chr12 130716758 130716842 -13565647 - L1MB7 LINE L1 -889 5295 5198 1822 150 20 20 chr12 130716842 130717148 -13565341 - AluJo SINE Alu -6 306 1 868 263 114 34 chr12 130717152 130717600 -13564889 - L1MEc LINE L1 -4759 1502 1019 * 352 298 96 0 chr12 130717651 130717755 -13564734 + MER58B DNA MER1_type 226 339 -2 971 246 99 58 chr12 130717767 130718098 -13564391 - L1MEc LINE L1 -5118 952 636 186 71 0 0 chr12 130718098 130718126 -13564363 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 971 246 99 58 chr12 130718126 130718173 -13564316 - L1MEc LINE L1 -5434 636 592 1548 184 17 28 chr12 130718173 130718461 -13564028 + AluJo SINE Alu 1 285 -27 971 246 99 58 chr12 130718461 130718478 -13564011 - L1MEc LINE L1 -5478 592 577 2612 51 0 10 chr12 130718478 130718791 -13563698 + AluY SINE Alu 1 310 -1 971 246 99 58 chr12 130718791 130718950 -13563539 - L1MEc LINE L1 -5493 577 373 231 287 58 23 chr12 130718945 130719032 -13563457 - L1MEc LINE L1 -5975 95 6 * 817 191 61 0 chr12 130719090 130719237 -13563252 + FRAM SINE Alu 4 159 -17 426 338 90 26 chr12 130720268 130720534 -13561955 - L3 LINE CR1 -860 717 435 2351 76 3 0 chr12 130720659 130720949 -13561540 - AluSx SINE Alu -21 291 1 225 281 211 26 chr12 130721763 130721877 -13560612 + L2 LINE L2 2383 2517 -797 2156 95 0 0 chr12 130724824 130725109 -13557380 - AluSg SINE Alu -9 301 17 189 213 0 0 chr12 130726532 130726579 -13555910 + (TA)n Simple_repeat Simple_repeat 1 47 0 721 202 0 16 chr12 130727384 130727513 -13554976 - FLAM_C SINE Alu -6 127 1 1848 120 28 14 chr12 130727524 130727807 -13554682 - AluSg SINE Alu -19 291 5 304 198 77 25 chr12 130727988 130728096 -13554393 + MIR SINE MIR 85 198 -10 342 0 0 0 chr12 130728334 130728372 -13554117 + (CA)n Simple_repeat Simple_repeat 1 38 0 491 240 0 33 chr12 130728889 130729010 -13553479 + MIR SINE MIR 30 146 -62 279 250 107 36 chr12 130731569 130731681 -13550808 + L2 LINE L2 1489 1608 -1706 2201 114 0 0 chr12 130731781 130732080 -13550409 - AluSx SINE Alu -13 299 1 1609 146 77 0 chr12 130732282 130732556 -13549933 - AluJo SINE Alu -17 295 1 1750 275 212 26 chr12 130732690 130733886 -13548603 + L2 LINE L2 1840 3273 -40 2212 101 7 0 chr12 130734258 130734554 -13547935 - AluSq SINE Alu -15 298 1 271 301 129 18 chr12 130734605 130734768 -13547721 + L2 LINE L2 3130 3310 -3 1566 151 81 0 chr12 130735864 130736135 -13546354 - AluSx SINE Alu -19 293 1 1941 125 0 4 chr12 130737380 130737681 -13544808 - AluSx SINE Alu 0 302 3 2132 121 0 3 chr12 130740327 130740634 -13541855 - AluSx SINE Alu -6 306 1 192 250 0 0 chr12 130740637 130740685 -13541804 + MIR SINE MIR 151 198 -64 1518 170 128 6 chr12 130740764 130741122 -13541367 + MER95 LTR ERV 30 431 0 2356 90 3 0 chr12 130741182 130741494 -13540995 + AluSp SINE Alu 1 313 0 1846 150 3 10 chr12 130741563 130741876 -13540613 - AluJo SINE Alu -1 311 1 1930 113 3 71 chr12 130741956 130742282 -13540207 + AluSx SINE Alu 1 304 -8 682 212 110 0 chr12 130742286 130742432 -13540057 + FRAM SINE Alu 2 163 -13 837 101 54 23 chr12 130742441 130742570 -13539919 + AluJo/FLAM SINE Alu 1 133 -169 2151 91 13 7 chr12 130742573 130742881 -13539608 + AluY SINE Alu 1 310 -1 256 240 62 10 chr12 130742954 130743050 -13539439 + L1ME LINE L1 5102 5202 -944 23 0 0 0 chr12 130743527 130743550 -13538939 + AT_rich Low_complexity Low_complexity 1 23 0 1406 163 81 27 chr12 130743664 130743959 -13538530 - AluJb SINE Alu -1 311 1 215 242 152 0 chr12 130743959 130744025 -13538464 + MIR3 SINE MIR 123 198 -10 299 300 64 0 chr12 130744066 130744176 -13538313 + L1ME LINE L1 5547 5663 -458 2277 92 0 0 chr12 130744647 130744951 -13537538 + AluY SINE Alu 1 304 -7 356 165 38 63 chr12 130745386 130745465 -13537024 - MER116 DNA Mariner -1 79 3 1798 145 3 33 chr12 130745561 130745865 -13536624 - AluJo SINE Alu -17 295 1 342 273 134 46 chr12 130746889 130747105 -13535384 + L2 LINE L2 2262 2496 -818 358 232 53 32 chr12 130747290 130747385 -13535104 - L2 LINE L2 -5 3267 3171 2125 110 10 0 chr12 130747721 130748013 -13534476 - AluSx SINE Alu -17 295 1 394 299 118 36 chr12 130748076 130748297 -13534192 - L2 LINE L2 -1057 2257 2019 * 589 213 182 3 chr12 130748292 130748485 -13534004 + MIR SINE MIR 18 245 -17 248 227 167 65 chr12 130748501 130748800 -13533689 - L2 LINE L2 -1321 1993 1617 2186 76 3 20 chr12 130748897 130749201 -13533288 - AluSq SINE Alu -13 300 2 231 240 98 77 chr12 130749205 130749253 -13533236 + L1MC5 LINE L1 7703 7748 -213 1328 195 89 31 chr12 130749253 130749602 -13532887 + MER93b LTR ERV1 5 373 0 231 240 98 77 chr12 130749602 130749736 -13532753 + L1MC5 LINE L1 7748 7889 -72 1463 286 72 35 chr12 130750212 130750555 -13531934 - L1MC4a LINE L1 -1675 6133 5804 216 0 0 0 chr12 130750555 130750579 -13531910 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1463 286 72 35 chr12 130750579 130750928 -13531561 - L1MC4a LINE L1 -2004 5804 5415 22 0 0 0 chr12 130750935 130750957 -13531532 + AT_rich Low_complexity Low_complexity 1 22 0 1935 118 0 11 chr12 130751296 130751607 -13530882 - AluSx SINE Alu 0 308 1 1209 173 5 5 chr12 130752086 130752306 -13530183 - AluJo SINE Alu -8 304 85 1700 143 14 34 chr12 130752585 130752879 -13529610 + AluJo SINE Alu 1 288 -24 5684 173 86 34 chr12 130754273 130755656 -13526833 - Charlie1a DNA MER1_type 0 1455 1 2443 58 0 7 chr12 130755885 130756194 -13526295 - AluY SINE Alu -4 307 1 2242 102 10 0 chr12 130756214 130756519 -13525970 - AluSx SINE Alu -3 309 2 518 171 0 0 chr12 130756615 130756697 -13525792 + AluJ/FLAM SINE Alu 2 83 -229 214 153 34 17 chr12 130756729 130756788 -13525701 + GA-rich Low_complexity Low_complexity 1 60 0 1906 131 7 0 chr12 130757352 130757663 -13524826 - AluSx SINE Alu 0 313 1 848 267 109 27 chr12 130757756 130758123 -13524366 + L1MC4 LINE L1 5536 5932 -1876 218 194 0 0 chr12 130758126 130758162 -13524327 + (TATG)n Simple_repeat Simple_repeat 3 38 0 344 264 11 22 chr12 130758167 130758258 -13524231 + L1MC4 LINE L1 6614 6703 -1339 1976 143 0 9 chr12 130758349 130758664 -13523825 + AluJb SINE Alu 1 312 0 550 290 45 17 chr12 130758842 130759018 -13523471 + MIR SINE MIR 3 183 -79 381 269 147 7 chr12 130759957 130760158 -13522331 + MIR3 SINE MIR 2 247 -15 310 255 28 110 chr12 130760188 130760294 -13522195 + MIR SINE MIR 20 133 -129 330 80 0 0 chr12 130760294 130760344 -13522145 + (TG)n Simple_repeat Simple_repeat 2 51 0 1698 147 0 4 chr12 130760348 130760613 -13521876 - AluJb SINE Alu -48 264 1 310 255 28 110 chr12 130760613 130760646 -13521843 + MIR SINE MIR 136 152 -110 198 0 0 0 chr12 130763901 130763923 -13518566 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 218 31 0 31 chr12 130766598 130766630 -13515859 + (TTC)n Simple_repeat Simple_repeat 3 33 0 222 280 220 15 chr12 130767550 130767682 -13514807 - MIR SINE MIR -101 161 3 414 182 26 0 chr12 130769599 130769676 -13512813 + L2 LINE L2 3194 3272 0 593 64 0 0 chr12 130769961 130770039 -13512450 - AluS SINE Alu -233 79 2 2231 99 3 3 chr12 130770788 130771101 -13511388 - AluSq SINE Alu 0 313 1 393 273 148 0 chr12 130771563 130771691 -13510798 + MIR SINE MIR 83 229 -33 597 228 4 110 chr12 130772261 130772356 -13510133 - L2 LINE L2 -997 2317 2214 1433 167 38 21 chr12 130772356 130772644 -13509845 + AluSg SINE Alu 5 297 -3 597 228 4 110 chr12 130772644 130772794 -13509695 - L2 LINE L2 -1100 2214 2098 750 131 0 0 chr12 130772796 130772903 -13509586 - FLAM_C SINE Alu -32 111 5 2155 82 9 19 chr12 130773167 130773482 -13509007 + AluSx SINE Alu 1 312 0 384 224 200 0 chr12 130774435 130774560 -13507929 - MIR SINE MIR 0 262 113 348 278 146 49 chr12 130774560 130774909 -13507580 + L1MC4 LINE L1 7530 7912 -49 1985 127 28 10 chr12 130774923 130775214 -13507275 - AluJb SINE Alu -16 296 1 2307 83 17 3 chr12 130775228 130775528 -13506961 - AluSc SINE Alu -5 304 1 359 152 121 0 chr12 130775542 130775608 -13506881 - MIR SINE MIR -82 126 53 591 228 27 33 chr12 130775697 130775881 -13506608 - MIR3 SINE MIR -2 206 24 180 350 19 50 chr12 130776031 130776191 -13506298 + MIR SINE MIR 62 216 -46 1207 93 0 0 chr12 130776372 130776522 -13505967 - AluSq/x SINE Alu -162 150 1 2086 115 0 17 chr12 130776862 130777157 -13505332 + AluJo SINE Alu 2 291 -21 412 245 52 108 chr12 130777333 130777474 -13505015 + MIR SINE MIR 44 171 -91 2254 121 0 0 chr12 130777474 130777779 -13504710 - AluSg SINE Alu -5 305 1 412 245 52 108 chr12 130777779 130777849 -13504640 + MIR SINE MIR 171 243 -19 410 327 88 22 chr12 130778193 130778419 -13504070 - MIR SINE MIR -13 249 9 212 162 27 0 chr12 130778477 130778514 -13503975 - MIR SINE MIR -77 185 148 1365 148 110 4 chr12 130778591 130778827 -13503662 + AluJo SINE Alu 34 294 -18 332 351 0 0 chr12 130778905 130779016 -13503473 - MIR SINE MIR -25 237 127 336 203 45 95 chr12 130779111 130779244 -13503245 + MIR SINE MIR 112 235 -27 253 317 139 53 chr12 130779658 130779802 -13502687 - L2 LINE L2 -17 3296 3166 2226 87 0 4 chr12 130779802 130780116 -13502373 + AluSg1 SINE Alu 3 315 0 253 317 139 53 chr12 130780116 130780251 -13502238 - L2 LINE L2 -147 3166 2992 705 298 94 3 chr12 130780285 130780594 -13501895 - LTR16C LTR ERVL -21 470 134 395 237 0 43 chr12 130780642 130780781 -13501708 + MER117 DNA MER1_type 15 147 -50 2266 76 10 17 chr12 130780823 130781113 -13501376 - AluSx SINE Alu -24 288 1 282 288 0 0 chr12 130781741 130781807 -13500682 + GA-rich Low_complexity Low_complexity 1 66 0 1796 142 9 68 chr12 130781840 130782165 -13500324 - AluJb SINE Alu -2 310 5 2499 74 0 0 chr12 130782520 130782817 -13499672 + AluY SINE Alu 1 297 -14 1451 144 0 36 chr12 130782849 130783071 -13499418 + AluJb SINE Alu 1 214 -98 2555 65 0 0 chr12 130783323 130783617 -13498872 - AluY SINE Alu -17 294 1 2397 82 13 3 chr12 130783933 130784239 -13498250 - AluSq SINE Alu -4 309 1 651 279 79 61 chr12 130784271 130784763 -13497726 - MLT1K LTR MaLR -2 586 86 505 336 7 7 chr12 130785013 130785159 -13497330 - MIR3 SINE MIR -50 158 13 317 362 58 0 chr12 130785796 130785934 -13496555 + MIR SINE MIR 107 252 -10 935 262 73 31 chr12 130785939 130786152 -13496337 + LTR16C LTR ERVL 1 204 -287 2060 137 3 3 chr12 130786152 130786451 -13496038 - AluSx SINE Alu -13 299 1 935 262 73 31 chr12 130786451 130786645 -13495844 + LTR16C LTR ERVL 204 491 0 2081 124 13 10 chr12 130787226 130787533 -13494956 - AluSx SINE Alu 0 312 5 2460 75 0 7 chr12 130787743 130788048 -13494441 + AluSg1 SINE Alu 1 303 -6 239 240 0 0 chr12 130788100 130788150 -13494339 + MIR SINE MIR 148 197 -65 2231 106 7 3 chr12 130788391 130788683 -13493806 - AluSx SINE Alu -17 295 3 270 348 87 0 chr12 130789115 130789230 -13493259 + MIR SINE MIR 15 139 -123 2224 118 3 3 chr12 130789430 130789743 -13492746 + AluSq SINE Alu 1 313 0 461 233 81 45 chr12 130789937 130790155 -13492334 - MIR SINE MIR -14 248 60 1913 143 3 17 chr12 130790500 130790635 -13491854 + AluJb SINE Alu 1 136 -176 2530 88 0 0 chr12 130790635 130790943 -13491546 + AluSc SINE Alu 1 308 -1 1913 143 3 17 chr12 130790943 130791108 -13491381 + AluJb SINE Alu 136 297 -15 2260 125 3 3 chr12 130791180 130791492 -13490997 - AluSx SINE Alu 0 312 1 711 278 29 37 chr12 130791605 130791846 -13490643 + MIR SINE MIR 14 252 -10 183 80 0 0 chr12 130791846 130791871 -13490618 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1785 190 0 3 chr12 130792586 130792897 -13489592 + AluJo SINE Alu 1 310 -2 225 266 32 32 chr12 130792952 130793046 -13489443 + MER89 LTR ERV1 1 94 -465 * 1316 199 84 38 chr12 130793015 130793362 -13489127 + MER89 LTR ERV1 197 559 0 1393 183 7 39 chr12 130793910 130794125 -13488364 - MLT1A1 LTR MaLR 0 365 159 2228 113 0 13 chr12 130794125 130794435 -13488054 - AluSg SINE Alu -4 306 1 1393 183 7 39 chr12 130794435 130794498 -13487991 - MLT1A1 LTR MaLR -206 159 96 2182 114 79 30 chr12 130794498 130794867 -13487622 + MER48 LTR ERV1 1 387 0 357 158 0 0 chr12 130794867 130794924 -13487565 - MLT1A1 LTR MaLR -273 101 45 287 118 39 0 chr12 130794926 130794977 -13487512 + MER65B LTR ERV1 3 55 -476 304 252 27 36 chr12 130795170 130795281 -13487208 + MER65A LTR ERV1 328 437 -8 259 93 93 0 chr12 130795295 130795338 -13487151 - MLT1A1 LTR MaLR -318 47 1 221 216 20 0 chr12 130795495 130795546 -13486943 - MER5B DNA MER1_type -74 104 53 1183 79 0 0 chr12 130795546 130795685 -13486804 - AluSg SINE Alu -169 141 3 2330 107 0 3 chr12 130795698 130795998 -13486491 - AluSg SINE Alu -11 299 1 342 191 0 29 chr12 130796000 130796068 -13486421 - MER5A DNA MER1_type -115 74 9 309 282 8 57 chr12 130796093 130796217 -13486272 - MER5A DNA MER1_type -51 138 21 284 250 226 16 chr12 130796237 130796361 -13486128 + MIR3 SINE MIR 36 185 -23 2150 142 0 3 chr12 130797675 130797978 -13484511 + AluSq SINE Alu 1 302 -11 967 182 102 17 chr12 130797979 130798082 -13484407 + MER2 DNA MER2_type 90 183 -162 1260 125 88 9 chr12 130798082 130798298 -13484191 - MER46A DNA MER2_type -3 233 1 967 182 102 17 chr12 130798298 130798430 -13484059 + MER2 DNA MER2_type 183 345 0 1879 293 129 29 chr12 130798498 130799795 -13482694 + L1MEc LINE L1 81 1508 -4888 2292 78 0 56 chr12 130799799 130800120 -13482369 + AluSg SINE Alu 3 305 -5 2117 132 0 26 chr12 130801362 130801673 -13480816 - AluSp SINE Alu -10 303 1 1890 169 0 25 chr12 130801676 130801996 -13480493 - AluJo SINE Alu 0 312 1 732 123 9 0 chr12 130802006 130802120 -13480369 - FRAM SINE Alu -3 173 59 224 241 0 0 chr12 130802138 130802192 -13480297 + MER5B DNA MER1_type 125 178 0 958 264 25 4 chr12 130802291 130802530 -13479959 + MIR SINE MIR 16 259 -3 2123 112 41 3 chr12 130802614 130802908 -13479581 - AluSx SINE Alu -7 305 1 350 296 11 23 chr12 130803381 130803557 -13478932 - AluSq SINE Alu -122 181 8 1247 155 33 28 chr12 130803756 130803969 -13478520 + AluJo SINE Alu 1 214 -98 895 152 0 0 chr12 130803968 130804093 -13478396 - AluJo/FLAM SINE Alu -187 125 1 * 1991 128 0 11 chr12 130804176 130804458 -13478031 + AluSx SINE Alu 33 311 -1 587 261 83 6 chr12 130804458 130804638 -13477851 - MLT1J LTR MaLR -254 257 64 1243 297 115 0 chr12 130805300 130805727 -13476762 + MLT1K LTR MaLR 1 476 0 2375 111 0 0 chr12 130805842 130806149 -13476340 - AluSx SINE Alu -5 307 1 192 182 0 0 chr12 130806220 130806264 -13476225 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 197 273 26 52 chr12 130806359 130806436 -13476053 - L2 LINE L2 -1 3271 3197 1321 170 4 17 chr12 130806465 130806700 -13475789 - AluJo SINE Alu 0 312 81 639 286 18 6 chr12 130806728 130806896 -13475593 + MIR SINE MIR 27 196 -66 763 187 133 54 chr12 130807075 130807246 -13475243 + MER20 DNA MER1_type 1 192 -27 2053 152 0 13 chr12 130807246 130807562 -13474927 + AluJo SINE Alu 1 312 0 763 187 133 54 chr12 130807562 130807593 -13474896 + MER20 DNA MER1_type 192 219 0 336 147 0 107 chr12 130807627 130807702 -13474787 + L2 LINE L2 3247 3313 0 500 270 118 24 chr12 130808203 130808414 -13474075 - L2 LINE L2 0 3313 3083 323 136 0 0 chr12 130808419 130808478 -13474011 - L1MB5 LINE L1 -1 6173 6115 811 126 0 0 chr12 130808483 130808594 -13473895 + FLAM_C SINE Alu 7 117 -26 2204 164 45 16 chr12 130808599 130808670 -13473819 - L1MB5 LINE L1 -43 6131 6061 1673 208 50 118 chr12 130808670 130809045 -13473444 - L1MC4 LINE L1 -496 5684 5707 1026 98 8 0 chr12 130809045 130809178 -13473311 + AluSq/x SINE Alu 1 134 -178 1673 208 50 118 chr12 130809178 130809576 -13472913 - L1MC4 LINE L1 -472 5708 5285 1251 131 0 0 chr12 130809598 130809774 -13472715 - AluSg/x SINE Alu 0 312 137 538 221 32 71 chr12 130809780 130809823 -13472666 - L2 LINE L2 -244 3069 3026 2484 66 3 7 chr12 130809823 130810126 -13472363 - AluY SINE Alu -9 302 1 538 221 32 71 chr12 130810126 130810236 -13472253 - L2 LINE L2 -287 3026 2922 211 277 15 31 chr12 130810225 130810290 -13472199 + MIR SINE MIR 89 152 -110 * 502 201 128 20 chr12 130810350 130810499 -13471990 + MIR SINE MIR 86 250 -12 1783 129 4 0 chr12 130810538 130810779 -13471710 - AluJb SINE Alu -70 242 1 216 97 0 0 chr12 130810779 130810810 -13471679 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 1025 155 19 0 chr12 130810811 130810966 -13471523 - FRAM SINE Alu -19 157 1 356 320 19 0 chr12 130811442 130811545 -13470944 + MIR SINE MIR 25 129 -79 192 276 0 17 chr12 130811969 130812027 -13470462 - MIR SINE MIR -110 152 96 684 134 143 0 chr12 130812036 130812148 -13470341 - FLAM_A SINE Alu -5 128 1 1286 158 22 127 chr12 130812490 130812707 -13469782 - AluYb8 SINE Alu 0 318 151 2179 136 7 0 chr12 130812707 130813017 -13469472 - AluSx SINE Alu 0 312 1 1286 158 22 127 chr12 130813017 130813154 -13469335 - AluYb8 SINE Alu -167 151 1 7588 148 58 23 chr12 130813154 130814527 -13467962 - L1M1 LINE L1 -5181 2384 963 459 184 23 0 chr12 130815082 130815169 -13467320 - L1M1 LINE L1 -6595 970 882 * 619 171 86 14 chr12 130815152 130815292 -13467197 - L1M1 LINE L1 -7196 369 220 * 2962 196 15 34 chr12 130815265 130815879 -13466610 - L1M1 LINE L1 -6906 659 56 2471 71 7 0 chr12 130815879 130816176 -13466313 - AluY SINE Alu -12 299 1 2962 196 15 34 chr12 130816176 130816214 -13466275 - L1M1 LINE L1 -7509 56 19 2243 126 7 0 chr12 130816479 130816789 -13465700 - AluSx SINE Alu 0 312 1 307 312 98 33 chr12 130817105 130817442 -13465047 - HAL1b LINE L1 -710 638 280 2233 113 0 10 chr12 130817452 130817754 -13464735 - AluSx SINE Alu -13 299 1 233 197 42 0 chr12 130818174 130818245 -13464244 + L1 LINE L1 2799 2872 -3274 2296 106 6 3 chr12 130818297 130818608 -13463881 - AluSx SINE Alu 0 312 1 953 180 6 6 chr12 130818612 130818773 -13463716 - FRAM SINE Alu -5 161 1 1196 173 56 0 chr12 130818845 130819076 -13463413 - L1MA4 LINE L1 -289 6011 5768 1240 176 9 5 chr12 130819076 130819286 -13463203 - AluJb SINE Alu -101 211 1 4807 152 28 39 chr12 130819288 130819461 -13463028 - L1MA4 LINE L1 -770 5376 5203 3226 150 15 4 chr12 130819461 130819942 -13462547 + MER66B LTR ERV1 1 486 0 4807 152 28 39 chr12 130819942 130820128 -13462361 - L1MA4 LINE L1 -943 5203 5017 1790 173 3 10 chr12 130820128 130820417 -13462072 + AluJb SINE Alu 2 288 -24 4807 152 28 39 chr12 130820417 130820590 -13461899 - L1MA4 LINE L1 -1129 5017 4844 2351 108 0 10 chr12 130820590 130820895 -13461594 + AluSx SINE Alu 1 302 -10 4807 152 28 39 chr12 130820895 130821422 -13461067 - L1MA4 LINE L1 -1302 4844 4326 1096 162 49 34 chr12 130821422 130821626 -13460863 + AluJb SINE Alu 84 290 -22 4215 150 16 12 chr12 130821627 130822161 -13460328 - L1MA4 LINE L1 -1811 4335 3796 4138 104 24 13 chr12 130822161 130822636 -13459853 + LTR43 LTR ERV1 1 485 -117 2094 88 77 0 chr12 130822636 130822910 -13459579 - AluSp SINE Alu -18 295 1 4138 104 24 13 chr12 130822910 130823030 -13459459 + LTR43 LTR ERV1 485 602 0 4215 150 16 12 chr12 130823030 130823295 -13459194 - L1MA4 LINE L1 -2350 3796 3533 1971 115 54 0 chr12 130823598 130823876 -13458613 - AluSx SINE Alu -19 293 1 2047 103 3 34 chr12 130824637 130824977 -13457512 + AluSp SINE Alu 1 331 0 2217 119 0 10 chr12 130825069 130825371 -13457118 + AluSx SINE Alu 1 299 -13 2641 178 184 31 chr12 130826679 130827049 -13455440 - L1MA7 LINE L1 -12 6279 5967 261 0 0 0 chr12 130827049 130827078 -13455411 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2022 118 25 0 chr12 130827078 130827358 -13455131 - AluSx SINE Alu -25 287 1 2641 178 184 31 chr12 130827358 130827956 -13454533 - L1MA7 LINE L1 -323 5968 4982 4048 130 124 29 chr12 130828059 130829331 -13453158 + pTR5 LTR ERV1 743 2438 0 1170 268 82 9 chr12 130830519 130830960 -13451529 - L1MC2 LINE L1 -13 6331 5859 218 271 17 17 chr12 130833225 130833284 -13449205 + L2 LINE L2 3235 3293 -20 375 248 51 0 chr12 130833484 130833601 -13448888 - MER3 DNA MER1_type -66 143 21 306 300 13 66 chr12 130834987 130835146 -13447343 + MIR SINE MIR 41 192 -61 726 234 76 101 chr12 130836527 130836939 -13445550 - MER66A LTR ERV1 -10 468 99 302 350 124 18 chr12 130837303 130837520 -13444969 - MIR SINE MIR -21 241 2 3003 233 56 24 chr12 130837928 130838413 -13444076 - L1MB7 LINE L1 -18 6664 6196 2457 68 14 0 chr12 130838413 130838705 -13443784 - AluSp SINE Alu -15 298 3 3003 233 56 24 chr12 130838705 130839382 -13443107 - L1MB7 LINE L1 -486 6196 5542 1946 130 0 11 chr12 130839382 130839684 -13442805 - AluSx SINE Alu 0 312 17 3003 233 56 24 chr12 130839684 130840212 -13442277 - L1MB7 LINE L1 -1140 5542 4908 1973 149 0 0 chr12 130840212 130840527 -13441962 - AluSx SINE Alu 0 315 1 3003 233 56 24 chr12 130840527 130840622 -13441867 - L1MB7 LINE L1 -1774 4908 4817 390 209 32 14 chr12 130840714 130840822 -13441667 + L1ME LINE L1 5538 5632 -489 637 185 13 0 chr12 130840828 130840979 -13441510 - L1MA7 LINE L1 0 6291 6139 1291 225 22 68 chr12 130840984 130841201 -13441288 - L1MB7 LINE L1 -1834 4810 4623 2415 91 3 0 chr12 130841201 130841498 -13440991 + AluSp SINE Alu 1 298 -15 1291 225 22 68 chr12 130841498 130841733 -13440756 - L1MB7 LINE L1 -2021 4623 4379 2979 221 55 77 chr12 130842410 130842550 -13439939 - L1MB7 LINE L1 -2244 4400 4259 2080 137 3 16 chr12 130842550 130842864 -13439625 - AluJb SINE Alu -2 310 1 2979 221 55 77 chr12 130842864 130843253 -13439236 - L1MB7 LINE L1 -2385 4259 3863 2626 62 0 0 chr12 130843253 130843558 -13438931 - AluY SINE Alu -6 305 1 2979 221 55 77 chr12 130843558 130844433 -13438056 - L1MB7 LINE L1 -2781 3863 3025 6738 72 19 52 chr12 130844453 130846804 -13435685 - SVA Other Other -518 1386 5 1065 230 35 74 chr12 130846825 130847647 -13434842 - L1MB7 LINE L1 -3604 3040 2259 917 191 259 8 chr12 130847707 130847943 -13434546 - AluYa8 SINE Alu -11 299 5 2283 244 56 38 chr12 130847992 130848261 -13434228 - L1MB7 LINE L1 -4572 2074 1811 1236 164 84 0 chr12 130848261 130848524 -13433965 - L1MA9 LINE L1 -3 6309 6025 2283 244 56 38 chr12 130848524 130848930 -13433559 - L1MB7 LINE L1 -4835 1811 1375 1825 207 46 18 chr12 130848930 130849384 -13433105 + MLT1C LTR MaLR 1 467 0 2283 244 56 38 chr12 130849384 130849649 -13432840 - L1MB7 LINE L1 -5271 1375 1116 1810 233 38 2 chr12 130849668 130850111 -13432378 - MER68 LTR ERV1 0 562 104 2074 255 30 32 chr12 130850118 130850741 -13431748 - L1MB7 LINE L1 -5920 622 1 2302 116 3 0 chr12 130850853 130851156 -13431333 + AluSp SINE Alu 3 306 -7 2508 77 0 0 chr12 130851356 130851656 -13430833 - AluY SINE Alu -11 300 1 2034 155 0 0 chr12 130851656 130851953 -13430536 - AluJo SINE Alu -14 298 2 912 128 0 8 chr12 130851967 130852100 -13430389 + AluJb SINE Alu 164 295 -17 65 43 0 0 chr12 130852325 130852418 -13430071 + AT_rich Low_complexity Low_complexity 1 93 0 939 179 134 0 chr12 130852732 130852955 -13429534 + HSATI Satellite Satellite 311 563 -14 26 64 0 0 chr12 130853303 130853350 -13429139 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr12 130853562 130853595 -13428894 + AT_rich Low_complexity Low_complexity 1 33 0 1032 113 0 0 chr12 130853942 130854075 -13428414 - AluSq/x SINE Alu -179 133 1 291 328 96 11 chr12 130854352 130854529 -13427960 - MIR SINE MIR -57 205 14 2160 113 0 3 chr12 130854879 130855170 -13427319 - AluSq SINE Alu -23 290 1 3281 197 59 53 chr12 130855216 130855841 -13426648 + L1MCa LINE L1 816 1436 -4990 2331 110 7 0 chr12 130855841 130856151 -13426338 + AluSx SINE Alu 1 312 0 3281 197 59 53 chr12 130856151 130856217 -13426272 + L1MCa LINE L1 1436 1500 -4926 1813 190 3 3 chr12 130856217 130856522 -13425967 + AluJb SINE Alu 1 305 -7 3281 197 59 53 chr12 130856522 130856875 -13425614 + L1MCa LINE L1 1500 1867 -4559 2352 105 0 6 chr12 130857279 130857594 -13424895 + AluSq SINE Alu 1 313 0 679 158 7 96 chr12 130857945 130858091 -13424398 + FLAM_A SINE Alu 1 133 0 2942 10 0 0 chr12 130858115 130858427 -13424062 - AluYb8 SINE Alu -6 312 1 2202 95 24 7 chr12 130858433 130858728 -13423761 - AluSx SINE Alu -12 300 1 2460 76 3 3 chr12 130858933 130859237 -13423252 + AluSg1 SINE Alu 1 304 -5 239 240 0 0 chr12 130859289 130859339 -13423150 + MIR SINE MIR 148 197 -65 2248 105 7 3 chr12 130859580 130859874 -13422615 - AluSx SINE Alu -17 295 1 270 348 87 0 chr12 130860304 130860419 -13422070 + MIR SINE MIR 15 139 -123 2240 121 0 3 chr12 130860619 130860932 -13421557 + AluSq SINE Alu 1 312 -1 461 233 81 45 chr12 130861126 130861344 -13421145 - MIR SINE MIR -14 248 60 1913 143 3 17 chr12 130861689 130861824 -13420665 + AluJb SINE Alu 1 136 -176 2538 88 0 0 chr12 130861824 130862131 -13420358 + AluSc SINE Alu 1 307 -2 1913 143 3 17 chr12 130862131 130862296 -13420193 + AluJb SINE Alu 136 297 -15 2274 122 3 3 chr12 130862368 130862680 -13419809 - AluSx SINE Alu 0 312 1 711 278 29 37 chr12 130862792 130863033 -13419456 + MIR SINE MIR 14 252 -10 183 80 0 0 chr12 130863033 130863058 -13419431 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1775 190 0 3 chr12 130863773 130864084 -13418405 + AluJo SINE Alu 1 310 -2 225 266 32 32 chr12 130864139 130864233 -13418256 + MER89 LTR ERV1 1 94 -465 * 1316 199 84 38 chr12 130864202 130864549 -13417940 + MER89 LTR ERV1 197 559 0 1393 183 7 39 chr12 130865097 130865312 -13417177 - MLT1A1 LTR MaLR 0 365 159 2263 113 0 10 chr12 130865312 130865621 -13416868 - AluSg SINE Alu -4 306 1 1393 183 7 39 chr12 130865621 130865684 -13416805 - MLT1A1 LTR MaLR -206 159 96 2182 114 79 30 chr12 130865684 130866053 -13416436 + MER48 LTR ERV1 1 387 0 357 158 0 0 chr12 130866053 130866110 -13416379 - MLT1A1 LTR MaLR -273 101 45 308 98 39 0 chr12 130866112 130866163 -13416326 + MER65B LTR ERV1 3 55 -476 304 252 27 36 chr12 130866356 130866467 -13416022 + MER65A LTR ERV1 328 437 -8 259 93 93 0 chr12 130866481 130866524 -13415965 - MLT1A1 LTR MaLR -318 47 1 221 216 20 0 chr12 130866681 130866732 -13415757 - MER5B DNA MER1_type -74 104 53 1183 79 0 0 chr12 130866732 130866871 -13415618 - AluSg SINE Alu -169 141 3 2380 104 0 0 chr12 130866884 130867183 -13415306 - AluSg SINE Alu -11 299 1 369 194 0 15 chr12 130867185 130867252 -13415237 - MER5A DNA MER1_type -115 74 9 378 250 8 57 chr12 130867277 130867401 -13415088 - MER5A DNA MER1_type -51 138 21 318 242 210 0 chr12 130867421 130867545 -13414944 + MIR3 SINE MIR 36 185 -23 209 319 58 7 chr12 130868085 130868223 -13414266 + L2 LINE L2 2531 2675 -639 1340 206 71 89 chr12 130868332 130868826 -13413663 + Charlie4a DNA MER1_type 24 508 0 701 229 80 16 chr12 130868979 130869180 -13413309 + MIR SINE MIR 53 261 -1 1533 181 65 4 chr12 130869233 130869509 -13412980 - AluJb SINE Alu -19 293 1 2471 82 0 13 chr12 130869545 130869860 -13412629 - AluSq SINE Alu -2 311 1 2243 107 0 13 chr12 130869862 130870161 -13412328 - AluSx SINE Alu -17 295 1 725 292 60 16 chr12 130870185 130870435 -13412054 - MIR SINE MIR 0 262 2 207 316 71 20 chr12 130870627 130870725 -13411764 - L2 LINE L2 -44 3228 3126 489 211 57 32 chr12 130870729 130870888 -13411601 - MIR SINE MIR -63 145 15 1241 254 146 35 chr12 130871240 130871332 -13411157 + L2 LINE L2 2429 2509 -804 2596 62 0 3 chr12 130871332 130871636 -13410853 - AluSc SINE Alu -6 303 1 1241 254 146 35 chr12 130871636 130872340 -13410149 + L2 LINE L2 2509 3311 -2 710 247 63 0 chr12 130872482 130872672 -13409817 + MIR SINE MIR 2 203 -59 23 101 0 0 chr12 130872672 130872751 -13409738 + AT_rich Low_complexity Low_complexity 1 79 0 357 232 34 17 chr12 130872755 130872932 -13409557 + (TA)n Simple_repeat Simple_repeat 1 180 0 200 170 0 43 chr12 130872953 130873000 -13409489 + MIR SINE MIR 185 229 -33 383 276 48 0 chr12 130873127 130873232 -13409257 - L2 LINE L2 -1 3271 3162 297 345 34 40 chr12 130873429 130873606 -13408883 - MIR SINE MIR -3 259 84 958 220 14 10 chr12 130873616 130873825 -13408664 - MIR SINE MIR -6 256 47 227 256 0 128 chr12 130873831 130873876 -13408613 - MIR SINE MIR -193 69 36 2205 116 0 16 chr12 130873876 130874187 -13408302 - AluSx SINE Alu -6 306 1 227 256 0 128 chr12 130874187 130874219 -13408270 - MIR SINE MIR -226 36 2 209 244 0 0 chr12 130874292 130874333 -13408156 - L2 LINE L2 -18 3295 3255 2012 174 8 32 chr12 130874422 130874738 -13407751 - MLT1A1 LTR MaLR 0 365 58 1810 141 43 36 chr12 130874738 130875043 -13407446 - AluSx SINE Alu -5 307 1 2012 174 8 32 chr12 130875043 130875100 -13407389 - MLT1A1 LTR MaLR -307 58 1 601 205 20 40 chr12 130875141 130875292 -13407197 - MER103 DNA DNA -11 155 8 2292 120 0 0 chr12 130875772 130876071 -13406418 + AluSx SINE Alu 1 299 -13 912 161 36 31 chr12 130876107 130876299 -13406190 - MER20 DNA MER1_type 0 219 27 768 278 14 19 chr12 130876634 130876850 -13405639 - MIR SINE MIR -1 261 47 699 218 50 0 chr12 130876855 130877034 -13405455 + L1MD2 LINE L1 6172 6359 0 2493 77 0 0 chr12 130877258 130877555 -13404934 - AluY SINE Alu -14 297 1 1912 171 3 0 chr12 130877972 130878276 -13404213 - AluJo SINE Alu -7 305 1 843 153 0 8 chr12 130878276 130878407 -13404082 - AluJo SINE Alu -177 135 6 348 238 30 40 chr12 130878411 130878512 -13403977 - MIR SINE MIR -74 188 89 374 243 52 140 chr12 130878882 130879133 -13403356 - L1M4c LINE L1 -2839 3543 910 336 288 79 17 chr12 130879452 130879616 -13402873 - MIR SINE MIR -62 146 6 2213 142 3 0 chr12 130880885 130881196 -13401293 + AluSx SINE Alu 1 312 0 1767 129 38 21 chr12 130881211 130881498 -13400991 + AluJb SINE Alu 1 292 -20 1517 151 175 15 chr12 130883399 130883736 -13398753 + MLT2C1 LTR ERVL 4 394 -3 566 295 30 0 chr12 130883739 130883905 -13398584 + MIR SINE MIR 13 183 -79 586 231 20 14 chr12 130884147 130884294 -13398195 - Charlie8 DNA MER1_type -2251 166 19 210 234 0 0 chr12 130885608 130885655 -13396834 + (CA)n Simple_repeat Simple_repeat 2 48 0 1024 208 63 44 chr12 130885655 130885905 -13396584 + MER46C DNA MER2_type 1 260 -78 2318 84 16 19 chr12 130885905 130886213 -13396276 - AluSx SINE Alu -5 307 1 1024 208 63 44 chr12 130886213 130886279 -13396210 + MER46C DNA MER2_type 260 323 -15 238 330 104 0 chr12 130886833 130886948 -13395541 + MIR3 SINE MIR 9 135 -73 458 219 125 26 chr12 130887182 130887374 -13395115 + L2 LINE L2 3103 3313 0 298 352 48 9 chr12 130888124 130888229 -13394260 + L2 LINE L2 3160 3268 -4 276 103 29 15 chr12 130888231 130888299 -13394190 + (AATTG)n Simple_repeat Simple_repeat 2 70 0 323 195 34 0 chr12 130888320 130888438 -13394051 + (GAGTG)n Simple_repeat Simple_repeat 4 125 0 618 126 54 0 chr12 130888453 130888620 -13393869 + (GAGTG)n Simple_repeat Simple_repeat 2 177 0 219 209 55 0 chr12 130888665 130888775 -13393714 + (GAATG)n Simple_repeat Simple_repeat 3 118 0 366 227 157 14 chr12 130889223 130889378 -13393111 + MIR SINE MIR 37 211 -51 560 305 0 0 chr12 130889912 130890079 -13392410 - MER117 DNA MER1_type -4 193 27 397 222 133 0 chr12 130890079 130890169 -13392320 - MIR SINE MIR -110 152 51 947 186 0 17 chr12 130890459 130890636 -13391853 - AluJo SINE Alu -138 174 1 432 165 165 0 chr12 130890636 130890751 -13391738 + L1ME3A LINE L1 6032 6165 -5 693 233 16 0 chr12 130890761 130890890 -13391599 + FLAM_A SINE Alu 3 133 0 1112 248 76 7 chr12 130890926 130891228 -13391261 + MLT1K LTR MaLR 266 588 0 339 85 0 0 chr12 130891623 130891670 -13390819 + (CATA)n Simple_repeat Simple_repeat 1 47 0 2181 111 0 0 chr12 130891676 130891956 -13390533 - AluSx SINE Alu -32 280 1 795 275 86 25 chr12 130891974 130892426 -13390063 + L1MC4a LINE L1 5516 5995 -1813 297 143 30 60 chr12 130892530 130892663 -13389826 + CT-rich Low_complexity Low_complexity 4 132 0 627 233 23 16 chr12 130892679 130892808 -13389681 - FLAM_A SINE Alu -3 130 1 2470 54 40 0 chr12 130892839 130893136 -13389353 + AluY SINE Alu 1 309 -2 393 311 17 8 chr12 130893319 130893438 -13389051 + L2 LINE L2 2921 3040 -232 252 277 28 156 chr12 130893667 130893708 -13388781 + L2 LINE L2 3142 3187 -85 2318 96 0 7 chr12 130893708 130894009 -13388480 + AluSq SINE Alu 1 299 -14 252 277 28 156 chr12 130894009 130894108 -13388381 + L2 LINE L2 3187 3264 -8 1014 134 12 2 chr12 130894769 130895280 -13387209 + (TGGA)n Simple_repeat Simple_repeat 1 516 0 354 109 0 0 chr12 130895359 130895414 -13387075 + Alu SINE Alu 248 302 0 405 0 0 0 chr12 130895455 130895500 -13386989 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 216 97 0 0 chr12 130895639 130895670 -13386819 + (TA)n Simple_repeat Simple_repeat 2 32 0 2592 61 0 3 chr12 130895758 130896069 -13386420 - AluY SINE Alu -1 310 1 227 268 0 0 chr12 130896286 130896342 -13386147 + CT-rich Low_complexity Low_complexity 1 56 0 2049 120 6 38 chr12 130896373 130896689 -13385800 + AluSx SINE Alu 1 306 -6 193 222 19 37 chr12 130896729 130896783 -13385706 - MIR SINE MIR -136 72 20 392 302 35 12 chr12 130896794 130896966 -13385523 + L1MC/D LINE L1 5622 5797 -2011 822 173 46 0 chr12 130897254 130897427 -13385062 - AluSc SINE Alu -4 305 125 1106 183 19 10 chr12 130897528 130897736 -13384753 + AluSg/x SINE Alu 77 286 -24 459 0 0 0 chr12 130897736 130897787 -13384702 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 557 167 0 11 chr12 130897818 130897908 -13384581 + AluSg/x SINE Alu 202 290 -19 3385 178 41 21 chr12 130897910 130898347 -13384142 - L1MB8 LINE L1 -17 6161 5702 2267 115 0 0 chr12 130898347 130898642 -13383847 + AluSx SINE Alu 1 295 -17 3385 178 41 21 chr12 130898642 130898929 -13383560 - L1MB8 LINE L1 -476 5702 5422 773 140 264 49 chr12 130899376 130899490 -13382999 - MER33 DNA MER1_type -2263 322 234 1895 92 104 0 chr12 130899490 130899741 -13382748 + AluSg SINE Alu 17 293 -17 773 140 264 49 chr12 130899741 130899891 -13382598 - MER33 DNA MER1_type -2351 234 1 23 0 0 0 chr12 130900556 130900579 -13381910 + AT_rich Low_complexity Low_complexity 1 23 0 2251 85 41 0 chr12 130900579 130900872 -13381617 + AluSp SINE Alu 1 305 -8 275 237 17 0 chr12 130900961 130901020 -13381469 + Charlie8 DNA MER1_type 1357 1416 -1001 242 236 50 50 chr12 130901986 130902126 -13380363 - L1ME4a LINE L1 -11 6110 5971 23 0 0 0 chr12 130902155 130902178 -13380311 + AT_rich Low_complexity Low_complexity 1 23 0 2411 90 3 0 chr12 130902600 130902901 -13379588 - AluSp SINE Alu -11 302 1 462 234 107 40 chr12 130902940 130903226 -13379263 - L1ME3 LINE L1 -221 5945 5626 303 256 101 105 chr12 130903223 130903385 -13379104 - L1ME3 LINE L1 -1005 5141 4978 * 2340 70 0 7 chr12 130903385 130903698 -13378791 - AluY SINE Alu 0 311 1 303 256 101 105 chr12 130903698 130903792 -13378697 - L1ME3 LINE L1 -1168 4978 4885 739 224 14 7 chr12 130903829 130903972 -13378517 - FRAM SINE Alu -31 145 2 813 117 69 21 chr12 130904282 130904427 -13378062 - L1MB3 LINE L1 -8 6175 6024 471 114 125 11 chr12 130904427 130904515 -13377974 - Tigger7 DNA MER2_type -1 2586 2489 * 1052 211 73 40 chr12 130904513 130904760 -13377729 - Tigger7 DNA MER2_type -2220 267 13 3374 175 35 57 chr12 130904763 130905226 -13377263 - L1MB3 LINE L1 -144 6039 5567 2227 114 10 0 chr12 130905226 130905532 -13376957 - AluSx SINE Alu -1 311 3 3374 175 35 57 chr12 130905532 130905920 -13376569 - L1MB3 LINE L1 -616 5567 5223 2164 119 3 0 chr12 130905920 130906214 -13376275 - AluY SINE Alu -16 295 1 3374 175 35 57 chr12 130906214 130906495 -13375994 - L1MB3 LINE L1 -960 5223 4937 327 260 170 20 chr12 130906894 130907060 -13375429 - MIR SINE MIR -58 204 18 362 279 25 8 chr12 130907076 130907198 -13375291 - MER103 DNA DNA -7 159 36 2497 87 3 0 chr12 130907578 130907888 -13374601 - AluSp SINE Alu -2 311 1 327 245 94 9 chr12 130908518 130908624 -13373865 - L1MB3 LINE L1 -1715 4431 4317 1115 125 19 6 chr12 130908684 130908844 -13373645 - AluSg/x SINE Alu -14 296 135 2882 218 114 56 chr12 130908845 130908908 -13373581 - L1MB3 LINE L1 -2291 3855 3797 2425 105 0 0 chr12 130908908 130909221 -13373268 - AluSq SINE Alu 0 313 1 2882 218 114 56 chr12 130909221 130909876 -13372613 - L1MB3 LINE L1 -2349 3797 3182 348 24 0 0 chr12 130909876 130909917 -13372572 + (TG)n Simple_repeat Simple_repeat 2 42 0 2882 218 114 56 chr12 130909917 130910073 -13372416 - L1MB3 LINE L1 -2964 3182 3037 2588 67 0 13 chr12 130910073 130910388 -13372101 - AluY SINE Alu 0 311 1 2882 218 114 56 chr12 130910388 130910679 -13371810 - L1MB3 LINE L1 -3109 3037 2620 793 252 132 16 chr12 130910750 130911072 -13371417 - L1MEc LINE L1 -3913 2483 2093 1513 127 18 5 chr12 130911072 130911293 -13371196 - AluSg/x SINE Alu -7 305 82 793 252 132 16 chr12 130911293 130911418 -13371071 - L1MEc LINE L1 -4303 2093 1984 35 24 0 0 chr12 130911419 130911461 -13371028 + AT_rich Low_complexity Low_complexity 1 42 0 984 275 172 23 chr12 130911462 130911924 -13370565 - MLT1G3 LTR MaLR 0 595 35 186 71 0 0 chr12 130911936 130911964 -13370525 + (CA)n Simple_repeat Simple_repeat 1 28 0 273 266 76 0 chr12 130912050 130912129 -13370360 - MLT1G3 LTR MaLR -510 85 1 911 227 173 20 chr12 130912134 130912237 -13370252 - L1MEc LINE L1 -4450 1946 1860 2301 119 0 0 chr12 130912237 130912549 -13369940 - AluSx SINE Alu 0 312 1 911 227 173 20 chr12 130912549 130912798 -13369691 - L1MEc LINE L1 -4536 1860 1540 198 0 0 0 chr12 130912821 130912843 -13369646 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2183 106 3 3 chr12 130912843 130913126 -13369363 - AluSg SINE Alu -22 288 3 1935 289 129 29 chr12 130913130 130914428 -13368061 - L1MEc LINE L1 -4888 1508 81 1409 168 72 42 chr12 130914497 130914628 -13367861 - MER2 DNA MER2_type -1 344 218 1243 130 88 9 chr12 130914628 130914844 -13367645 + MER46A DNA MER2_type 1 233 -3 1409 168 72 42 chr12 130914844 130914948 -13367541 - MER2 DNA MER2_type -127 218 119 2176 142 0 0 chr12 130914948 130915250 -13367239 - AluSq SINE Alu -11 302 1 1409 168 72 42 chr12 130915250 130915347 -13367142 - MER2 DNA MER2_type -226 119 1 2479 165 41 23 chr12 130915441 130915565 -13366924 - L1MB3 LINE L1 -7 6176 6056 1895 124 4 11 chr12 130915565 130915840 -13366649 - AluSx SINE Alu -4 308 36 2479 165 41 23 chr12 130915840 130916229 -13366260 - L1MB3 LINE L1 -127 6056 5654 2280 95 24 0 chr12 130916261 130916557 -13365932 - AluSp SINE Alu -10 303 1 1626 264 125 2 chr12 130917104 130917702 -13364787 + MER20B DNA MER1_type 1 672 -111 2280 109 16 0 chr12 130917937 130918240 -13364249 + AluSc SINE Alu 1 308 -1 252 173 0 39 chr12 130918292 130918344 -13364145 - MER5A DNA MER1_type -139 50 1 1222 168 38 14 chr12 130918441 130918650 -13363839 - AluJb SINE Alu -13 299 86 2286 103 3 7 chr12 130918670 130918972 -13363517 + AluSx SINE Alu 1 301 -11 1202 152 0 0 chr12 130918972 130919143 -13363346 + AluSg/x SINE Alu 134 304 -8 1620 103 5 0 chr12 130919525 130919739 -13362750 + AluSg/x SINE Alu 87 301 -11 685 175 32 0 chr12 130919739 130919865 -13362624 - AluJo/FLAM SINE Alu -172 130 1 1222 202 142 5 chr12 130920191 130920558 -13361931 + MLT1D LTR MaLR 1 417 -88 364 51 0 34 chr12 130920627 130920686 -13361803 - FLAM_A SINE Alu 0 133 77 * 460 169 0 0 chr12 130920683 130920766 -13361723 + MLT1D LTR MaLR 423 505 0 2227 91 7 33 chr12 130921080 130921212 -13361277 + AluSq SINE Alu 2 136 -167 7237 46 11 16 chr12 130921212 130922845 -13359644 + SVA Other Other 2 1395 0 2227 91 7 33 chr12 130922845 130923017 -13359472 + AluSq SINE Alu 136 300 -3 559 160 0 40 chr12 130923084 130923184 -13359305 + FLAM_A SINE Alu 30 125 -17 26 0 0 0 chr12 130923184 130923210 -13359279 + AT_rich Low_complexity Low_complexity 1 26 0 1720 138 9 63 chr12 130923212 130923530 -13358959 + AluJb SINE Alu 5 305 -7 188 186 93 0 chr12 130923906 130923949 -13358540 - MIR SINE MIR -114 148 102 2236 104 3 10 chr12 130924194 130924502 -13357987 + AluSg SINE Alu 1 306 -4 2346 102 0 0 chr12 130924925 130925228 -13357261 + AluSx SINE Alu 9 311 -1 2242 86 13 25 chr12 130925667 130925981 -13356508 + AluSx SINE Alu 1 310 -2 2197 116 7 3 chr12 130926227 130926537 -13355952 + AluSx SINE Alu 1 311 -1 431 286 73 51 chr12 130926550 130926638 -13355851 + MIR SINE MIR 67 152 -110 2166 124 3 0 chr12 130926638 130926937 -13355552 + AluSq SINE Alu 1 300 -13 431 286 73 51 chr12 130926937 130927026 -13355463 + MIR SINE MIR 152 248 -14 966 187 11 5 chr12 130927521 130927708 -13354781 + MER20 DNA MER1_type 13 200 -19 200 257 81 14 chr12 130927813 130927887 -13354602 + MIR SINE MIR 79 157 -105 484 258 166 23 chr12 130928050 130928267 -13354222 - MIR SINE MIR -3 259 12 182 238 24 0 chr12 130928813 130928855 -13353634 - L3 LINE CR1 -919 658 616 377 295 132 43 chr12 130928866 130929162 -13353327 + L2 LINE L2 2685 3004 -309 570 219 57 38 chr12 130930063 130930273 -13352216 + L1ME1 LINE L1 5947 6160 -6 2060 123 7 0 chr12 130930285 130930577 -13351912 + AluSq SINE Alu 1 294 -19 2461 70 10 3 chr12 130936303 130936602 -13345887 + AluY SINE Alu 1 301 -10 2214 118 0 7 chr12 130936608 130936913 -13345576 + AluSg SINE Alu 1 303 -7 2118 110 36 13 chr12 130936914 130937215 -13345274 + AluSg SINE Alu 1 308 -2 719 273 121 9 chr12 130937956 130938187 -13344302 - MIR SINE MIR 0 262 6 2632 70 3 0 chr12 130938638 130938950 -13343539 + AluSp SINE Alu 1 313 0 2011 137 0 10 chr12 130939270 130939563 -13342926 - AluJb SINE Alu -22 290 1 196 250 94 31 chr12 130939736 130939800 -13342689 - L2 LINE L2 -26 3246 3179 2134 133 3 0 chr12 130939853 130940154 -13342335 + AluSg SINE Alu 3 304 -6 308 344 61 8 chr12 130940777 130940908 -13341581 + MIR SINE MIR 117 254 -8 1357 178 63 7 chr12 130941617 130941903 -13340586 - MER58B DNA MER1_type -2 339 38 24 108 0 0 chr12 130944080 130944117 -13338372 + GC_rich Low_complexity Low_complexity 1 37 0 757 237 106 17 chr12 130944686 130944922 -13337567 - MIR SINE MIR 0 262 6 412 204 97 11 chr12 130945103 130945196 -13337293 + L2 LINE L2 3166 3266 -6 290 170 43 32 chr12 130945949 130946043 -13336446 + MER103 DNA DNA 60 154 -12 308 288 93 17 chr12 130946200 130946318 -13336171 + L1MC4a LINE L1 5768 5894 -1914 505 133 0 56 chr12 130946332 130946422 -13336067 - FRAM SINE Alu -19 157 73 26 30 0 0 chr12 130946422 130946455 -13336034 + AT_rich Low_complexity Low_complexity 1 33 0 2062 146 3 3 chr12 130946461 130946763 -13335726 + AluJb SINE Alu 1 302 -10 2401 96 3 0 chr12 130946992 130947295 -13335194 + AluSg SINE Alu 1 304 -6 2288 98 3 0 chr12 130947382 130947678 -13334811 - AluSg SINE Alu -13 297 1 2421 101 10 0 chr12 130947695 130948003 -13334486 - AluSx SINE Alu 0 312 2 532 171 0 0 chr12 130948099 130948181 -13334308 + AluJ/FLAM SINE Alu 2 83 -229 214 153 34 17 chr12 130948213 130948272 -13334217 + GA-rich Low_complexity Low_complexity 1 60 0 2047 131 7 0 chr12 130948835 130949146 -13333343 - AluSx SINE Alu 0 313 1 777 270 109 27 chr12 130949239 130949606 -13332883 + L1MC4a LINE L1 5536 5932 -1876 218 194 0 0 chr12 130949609 130949645 -13332844 + (TATG)n Simple_repeat Simple_repeat 3 38 0 349 289 10 10 chr12 130949652 130949749 -13332740 - L1MC4 LINE L1 -1339 6703 6607 2131 143 0 9 chr12 130949832 130950147 -13332342 + AluJb SINE Alu 1 312 0 552 290 45 17 chr12 130950325 130950501 -13331988 + MIR SINE MIR 3 183 -79 388 269 147 7 chr12 130951440 130951641 -13330848 + MIR3 SINE MIR 2 247 -15 312 255 28 110 chr12 130951671 130951777 -13330712 + MIR SINE MIR 20 133 -129 330 80 0 0 chr12 130951777 130951827 -13330662 + (TG)n Simple_repeat Simple_repeat 2 51 0 1826 147 0 4 chr12 130951831 130952096 -13330393 - AluJb SINE Alu -48 264 1 312 255 28 110 chr12 130952096 130952129 -13330360 + MIR SINE MIR 136 152 -110 198 0 0 0 chr12 130955384 130955406 -13327083 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 218 31 0 31 chr12 130958081 130958113 -13324376 + (TTC)n Simple_repeat Simple_repeat 3 33 0 217 280 220 15 chr12 130959033 130959165 -13323324 - MIR SINE MIR -101 161 3 416 182 26 0 chr12 130961082 130961159 -13321330 + L2 LINE L2 3194 3272 0 604 64 0 0 chr12 130961444 130961522 -13320967 - AluS SINE Alu -233 79 2 2387 99 3 3 chr12 130962271 130962584 -13319905 - AluSq SINE Alu 0 313 1 389 273 148 0 chr12 130963046 130963174 -13319315 + MIR SINE MIR 83 229 -33 874 143 0 8 chr12 130964151 130964284 -13318205 + FLAM_C SINE Alu 1 132 -1 21 36 0 0 chr12 130964284 130964312 -13318177 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr12 130965227 130965257 -13317232 + (CA)n Simple_repeat Simple_repeat 2 31 0 306 283 121 54 chr12 130965997 130966163 -13316326 + MER5A DNA MER1_type 7 183 -6 253 314 83 71 chr12 130966020 130966189 -13316300 - MER5A DNA MER1_type -18 171 1 * 25 31 0 0 chr12 130967034 130967066 -13315423 + GC_rich Low_complexity Low_complexity 1 32 0 180 125 0 0 chr12 130967094 130967126 -13315363 + (CAG)n Simple_repeat Simple_repeat 3 34 0 343 204 48 48 chr12 130968223 130968326 -13314163 - MIR3 SINE MIR -53 155 53 500 161 282 13 chr12 130968423 130968572 -13313917 + MER53 DNA DNA 1 189 0 2216 106 23 3 chr12 130968900 130969203 -13313286 - AluSc SINE Alu 0 309 1 458 271 41 0 chr12 130969710 130969832 -13312657 + MIR SINE MIR 22 148 -114 1801 152 11 65 chr12 130969832 130970103 -13312386 - MER7A DNA MER2_type -2692 346 62 2235 103 0 0 chr12 130970103 130970384 -13312105 + AluSx SINE Alu 12 292 -20 1801 152 11 65 chr12 130970384 130970397 -13312092 - MER7A DNA MER2_type -2976 62 50 279 0 0 0 chr12 130970397 130970428 -13312061 + (CA)n Simple_repeat Simple_repeat 2 32 0 705 186 0 0 chr12 130970432 130970581 -13311908 - FLAM_C SINE Alu 0 149 1 1801 152 11 65 chr12 130970581 130970656 -13311833 - MER7A DNA MER2_type -2991 47 1 2163 135 7 0 chr12 130970662 130970965 -13311524 - AluSx SINE Alu -7 305 1 191 250 0 0 chr12 130970968 130971016 -13311473 + MIR SINE MIR 151 198 -64 1459 173 125 6 chr12 130971095 130971454 -13311035 + MER95 LTR ERV 30 431 0 2513 90 3 0 chr12 130971514 130971826 -13310663 + AluSp SINE Alu 1 313 0 2001 150 3 10 chr12 130971895 130972208 -13310281 - AluJo SINE Alu -1 311 1 469 124 36 153 chr12 130972249 130972288 -13310201 - MER50 LTR ERV1 -29 705 663 2251 108 3 0 chr12 130972288 130972574 -13309915 + AluSx SINE Alu 1 287 -25 469 124 36 153 chr12 130972574 130972671 -13309818 - MER50 LTR ERV1 -71 663 585 2372 91 0 3 chr12 130972680 130972977 -13309512 + AluSx SINE Alu 1 296 -16 2215 112 7 0 chr12 130973047 130973341 -13309148 - AluSx SINE Alu -16 296 1 1766 135 30 27 chr12 130973342 130973638 -13308851 - AluJb SINE Alu -2 310 14 2005 152 0 3 chr12 130974272 130974562 -13307927 - AluSx SINE Alu -17 295 7 2461 90 3 0 chr12 130974602 130974912 -13307577 - AluSp SINE Alu -2 311 1 345 281 18 35 chr12 130975001 130975115 -13307374 - MIR SINE MIR -69 193 82 599 261 20 7 chr12 130975166 130975319 -13307170 + MIR SINE MIR 22 176 -86 2138 125 3 7 chr12 130975364 130975668 -13306821 - AluSx SINE Alu -9 303 1 535 292 58 6 chr12 130975724 130975895 -13306594 + MIR SINE MIR 2 181 -81 352 286 41 10 chr12 130976634 130976732 -13305757 + MIR SINE MIR 81 181 -81 2045 141 0 31 chr12 130976751 130977070 -13305419 + AluJo SINE Alu 1 309 -3 2369 116 0 0 chr12 130977070 130977373 -13305116 + AluSx SINE Alu 1 303 -9 485 208 167 0 chr12 130977405 130977501 -13304988 - FLAM_A SINE Alu -30 112 1 331 263 51 3 chr12 130977539 130977664 -13304825 + MIR SINE MIR 10 146 -62 2374 113 3 0 chr12 130977731 130978041 -13304448 + AluSp SINE Alu 1 311 -2 603 144 102 0 chr12 130978207 130978325 -13304164 + MER3 DNA MER1_type 76 205 -4 321 129 16 48 chr12 130978286 130978348 -13304141 - MER3 DNA MER1_type -119 90 31 * 2200 123 0 0 chr12 130978368 130978661 -13303828 - AluSq SINE Alu -17 296 4 260 288 0 0 chr12 130978608 130978667 -13303822 - AluSg/x SINE Alu -111 189 131 499 299 106 73 chr12 130978679 130979020 -13303469 - L2 LINE L2 -40 3273 2922 256 259 81 92 chr12 130979011 130979105 -13303384 - MIR SINE MIR -32 230 137 * 2064 139 0 34 chr12 130979105 130979428 -13303061 + AluSx SINE Alu 1 312 0 256 259 81 92 chr12 130979428 130979518 -13302971 - MIR SINE MIR -125 137 48 2017 87 6 53 chr12 130979528 130979850 -13302639 - AluSx SINE Alu -5 307 1 1770 167 3 10 chr12 130980263 130980557 -13301932 - AluJo SINE Alu -19 293 2 617 200 18 182 chr12 130980563 130980671 -13301818 - MIR SINE MIR -10 252 175 243 143 0 0 chr12 130980671 130980706 -13301783 + tRNA-Gly-GGG tRNA tRNA 1 35 -39 617 200 18 182 chr12 130980706 130980838 -13301651 - MIR SINE MIR -87 175 23 2274 80 0 25 chr12 130980841 130981155 -13301334 - AluY SINE Alu -5 306 1 468 263 44 63 chr12 130981168 130981373 -13301116 - L1ME3A LINE L1 -8 6162 5962 2047 136 0 16 chr12 130981393 130981710 -13300779 - AluSx SINE Alu 0 312 1 595 205 52 117 chr12 130981807 130981855 -13300634 - L1MC5 LINE L1 -439 7522 7472 1953 83 4 0 chr12 130981855 130982107 -13300382 - AluSp SINE Alu -60 253 1 595 205 52 117 chr12 130982107 130982365 -13300124 - L1MC5 LINE L1 -489 7472 7236 1830 176 0 3 chr12 130982371 130982673 -13299816 - AluJo SINE Alu -11 301 1 373 324 103 105 chr12 130982913 130983069 -13299420 + L2 LINE L2 2825 2980 -292 1951 73 31 0 chr12 130983069 130983330 -13299159 - AluSx SINE Alu -39 273 5 373 324 103 105 chr12 130983330 130983620 -13298869 + L2 LINE L2 2980 3270 -2 1972 137 3 3 chr12 130983693 130983992 -13298497 - AluSx SINE Alu -13 299 1 1894 133 33 7 chr12 130984164 130984464 -13298025 + AluJo SINE Alu 2 309 -3 21 0 0 0 chr12 130984500 130984521 -13297968 + AT_rich Low_complexity Low_complexity 1 21 0 1493 113 0 0 chr12 130984688 130984900 -13297589 - AluSg/x SINE Alu -14 296 85 789 250 27 0 chr12 130985422 130985606 -13296883 + MER5A DNA MER1_type 1 189 0 315 253 0 0 chr12 130985844 130985923 -13296566 - MIR SINE MIR -110 152 74 1486 126 129 4 chr12 130985980 130986243 -13296246 - AluSx SINE Alu -16 296 1 258 352 84 11 chr12 130986309 130986488 -13296001 + L2 LINE L2 3025 3216 -97 2102 106 3 0 chr12 130986670 130986962 -13295527 + AluSx SINE Alu 1 293 -19 241 355 123 4 chr12 130987684 130987952 -13294537 + L2 LINE L2 2632 2931 -383 1711 89 0 0 chr12 130987962 130988186 -13294303 - AluSg/x SINE Alu -8 302 79 941 173 6 22 chr12 130988226 130988405 -13294084 - FRAM SINE Alu 0 176 1 2365 72 10 0 chr12 130988411 130988718 -13293771 - AluY SINE Alu -1 310 1 3862 151 14 44 chr12 130988725 130989002 -13293487 - L1MC1 LINE L1 -12 6321 6037 2125 122 0 10 chr12 130989002 130989314 -13293175 - AluJb SINE Alu -3 309 1 3862 151 14 44 chr12 130989314 130989550 -13292939 - L1MC1 LINE L1 -296 6037 5832 2096 121 6 10 chr12 130989550 130989863 -13292626 - AluSx SINE Alu 0 312 1 3862 151 14 44 chr12 130989863 130990050 -13292439 - L1MC1 LINE L1 -501 5832 5641 260 299 70 61 chr12 130990052 130990266 -13292223 + L2 LINE L2 2971 3186 -86 760 262 33 5 chr12 130990634 130990844 -13291645 + MIR SINE MIR 46 261 -1 2157 88 0 3 chr12 130990879 130991193 -13291296 + AluSx SINE Alu 1 313 0 2265 115 0 0 chr12 130991470 130991782 -13290707 + AluSq SINE Alu 1 312 -1 2161 99 0 3 chr12 130991793 130992107 -13290382 + AluSx SINE Alu 1 312 0 208 226 21 21 chr12 130992289 130992382 -13290107 + (TGGA)n Simple_repeat Simple_repeat 1 93 0 330 356 11 11 chr12 130992399 130992579 -13289910 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 * 385 325 30 0 chr12 130992558 130992724 -13289765 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 926 170 9 0 chr12 130992724 130993061 -13289428 + (TGGA)n Simple_repeat Simple_repeat 1 340 0 582 270 77 31 chr12 130993840 130994062 -13288427 - MIR SINE MIR 0 262 31 680 108 0 29 chr12 130994868 130994970 -13287519 + FRAM SINE Alu 71 169 -7 1867 163 0 13 chr12 130996056 130996363 -13286126 + AluSx SINE Alu 1 303 -9 571 242 143 25 chr12 130996929 130997153 -13285336 + MIR SINE MIR 9 252 -10 1262 140 25 10 chr12 130997215 130997415 -13285074 - MER3 DNA MER1_type -4 205 3 799 275 24 24 chr12 130997421 130997534 -13284955 + MIR SINE MIR 5 117 -145 2226 105 3 0 chr12 130997534 130997838 -13284651 - AluSx SINE Alu -7 305 1 799 275 24 24 chr12 130997838 130997971 -13284518 + MIR SINE MIR 116 251 -11 222 118 0 0 chr12 130997977 130998011 -13284478 + (TTA)n Simple_repeat Simple_repeat 2 35 0 210 143 0 0 chr12 130998595 130998630 -13283859 + (CA)n Simple_repeat Simple_repeat 1 35 0 1923 94 4 22 chr12 130999028 130999303 -13283186 - AluSx SINE Alu -42 270 1 249 258 152 0 chr12 130999367 130999433 -13283056 - Charlie8 DNA MER1_type -2339 78 3 1997 102 11 0 chr12 131000598 131000920 -13281569 + AluSx SINE Alu 1 325 0 703 277 27 23 chr12 131000943 131001163 -13281326 + MIR SINE MIR 29 249 -13 225 267 0 0 chr12 131001172 131001217 -13281272 + (ATGGTG)n Simple_repeat Simple_repeat 4 48 0 354 311 99 25 chr12 131001628 131001789 -13280700 + L3 LINE CR1 1374 1546 -31 317 277 72 0 chr12 131001877 131001987 -13280502 + MIR SINE MIR 23 141 -67 608 217 126 23 chr12 131002218 131002393 -13280096 - MIR SINE MIR 0 262 70 240 283 11 87 chr12 131002783 131002875 -13279614 + MIR3 SINE MIR 70 154 -54 366 184 0 0 chr12 131004373 131004449 -13278040 + (CA)n Simple_repeat Simple_repeat 1 76 0 198 282 58 48 chr12 131005496 131005528 -13276961 + MIR SINE MIR 43 73 -135 2078 128 0 0 chr12 131005528 131005826 -13276663 - AluSx SINE Alu -13 299 2 198 282 58 48 chr12 131005826 131005896 -13276593 + MIR SINE MIR 73 146 -62 343 288 86 40 chr12 131006009 131006231 -13276258 - L2 LINE L2 -40 3273 3042 446 247 193 7 chr12 131006373 131006523 -13275966 - MER5B DNA MER1_type 0 178 1 738 251 16 74 chr12 131006526 131006544 -13275945 + MIR SINE MIR 12 29 -233 2115 99 0 38 chr12 131006544 131006857 -13275632 + AluSx SINE Alu 1 301 -11 738 251 16 74 chr12 131006857 131006904 -13275585 + MIR SINE MIR 29 77 -185 842 87 71 24 chr12 131006904 131007031 -13275458 + FLAM_C SINE Alu 1 133 0 738 251 16 74 chr12 131007031 131007207 -13275282 + MIR SINE MIR 77 240 -22 1797 154 10 13 chr12 131007604 131007910 -13274579 + AluJo SINE Alu 1 305 -7 839 221 0 0 chr12 131008349 131008512 -13273977 - FRAM SINE Alu -13 163 1 257 172 0 172 chr12 131008513 131008575 -13273914 + MIR3 SINE MIR 68 103 -105 2033 126 3 0 chr12 131008575 131008869 -13273620 - AluSx SINE Alu -17 295 1 257 172 0 172 chr12 131008869 131008922 -13273567 + MIR3 SINE MIR 103 163 -45 1998 144 0 0 chr12 131009312 131009610 -13272879 + AluSx SINE Alu 1 298 -14 231 36 0 0 chr12 131009655 131009683 -13272806 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 475 281 101 7 chr12 131010132 131010335 -13272154 - MIR SINE MIR -14 248 30 220 235 159 76 chr12 131010551 131010683 -13271806 - MIR SINE MIR 0 262 120 808 156 8 8 chr12 131010687 131010815 -13271674 + FLAM_C SINE Alu 2 129 -14 225 0 0 0 chr12 131011406 131011431 -13271058 + (T)n Simple_repeat Simple_repeat 1 25 0 194 278 19 120 chr12 131011523 131011631 -13270858 + L2 LINE L2 3173 3269 -3 26 88 0 0 chr12 131013455 131013523 -13268966 + GC_rich Low_complexity Low_complexity 1 68 0 197 83 28 0 chr12 131013593 131013629 -13268860 + (CGCGG)n Simple_repeat Simple_repeat 1 37 0 191 30 0 61 chr12 131013859 131013892 -13268597 + (CCCCG)n Simple_repeat Simple_repeat 3 33 0 495 290 49 22 chr12 131014493 131014676 -13267813 + MIR SINE MIR 39 226 -36 499 153 12 12 chr12 131014875 131014960 -13267529 + AluSg SINE Alu 2 86 -224 2025 114 13 0 chr12 131015190 131015488 -13267001 - AluSx SINE Alu -10 302 1 2009 119 10 10 chr12 131015501 131015812 -13266677 - AluSx SINE Alu -1 311 1 2063 93 10 19 chr12 131015821 131016134 -13266355 - AluY SINE Alu -1 310 1 1705 241 90 5 chr12 131016137 131016740 -13265749 + L1M4 LINE L1 2239 2892 -3254 * 2748 164 32 0 chr12 131016707 131017230 -13265259 + L1MC2 LINE L1 5596 6135 -209 720 161 40 13 chr12 131017231 131017380 -13265109 + L1MC2 LINE L1 6168 6320 -24 536 307 41 83 chr12 131017599 131017889 -13264600 - L2 LINE L2 -3 3269 2992 2017 128 0 22 chr12 131017903 131018223 -13264266 + AluSq SINE Alu 1 313 0 2049 112 3 22 chr12 131018269 131018581 -13263908 + AluSx SINE Alu 1 306 -6 180 274 20 20 chr12 131018621 131018672 -13263817 - MIR SINE MIR -191 71 21 450 303 69 18 chr12 131018686 131018904 -13263585 + L1MC4a LINE L1 5622 5850 -1958 2259 104 3 0 chr12 131019145 131019452 -13263037 - AluSx SINE Alu -4 308 1 1416 145 10 90 chr12 131019456 131019746 -13262743 - AluJo SINE Alu 0 312 46 856 168 0 0 chr12 131019775 131019906 -13262583 + AluJo/FLAM SINE Alu 3 133 -169 1978 157 0 0 chr12 131019909 131020209 -13262280 + AluJb SINE Alu 1 300 -12 459 276 135 6 chr12 131020212 131020375 -13262114 - MIR SINE MIR -2 260 77 224 271 0 35 chr12 131020595 131020680 -13261809 + C-rich Low_complexity Low_complexity 1 82 0 198 174 0 0 chr12 131020779 131020825 -13261664 + CT-rich Low_complexity Low_complexity 1 46 0 240 227 15 0 chr12 131021132 131021198 -13261291 + CT-rich Low_complexity Low_complexity 2 68 0 318 26 0 0 chr12 131021199 131021238 -13261251 + (CA)n Simple_repeat Simple_repeat 2 40 0 2198 120 0 0 chr12 131021309 131021618 -13260871 + AluSx SINE Alu 1 309 -3 352 322 136 28 chr12 131021667 131021881 -13260608 + MIR SINE MIR 26 262 0 395 235 10 10 chr12 131022138 131022240 -13260249 + MIR SINE MIR 100 201 -61 325 295 25 41 chr12 131022346 131022468 -13260021 + MIR SINE MIR 26 145 -63 443 283 228 0 chr12 131022474 131022658 -13259831 - MIR SINE MIR 0 262 37 2130 92 6 13 chr12 131022782 131023096 -13259393 + AluSx SINE Alu 1 312 0 544 309 169 18 chr12 131023264 131023649 -13258840 - L2 LINE L2 -31 3282 2840 257 286 11 10 chr12 131023706 131023814 -13258675 - MIR SINE MIR -72 136 41 272 383 39 0 chr12 131024941 131025095 -13257394 + MIR SINE MIR 79 238 -24 568 247 44 16 chr12 131027058 131027240 -13255249 - MIR SINE MIR -10 252 66 1729 149 0 51 chr12 131027296 131027474 -13255015 - AluJo SINE Alu -12 300 115 241 47 47 0 chr12 131027474 131027517 -13254972 + (TG)n Simple_repeat Simple_repeat 2 46 0 2075 100 0 10 chr12 131027517 131027806 -13254683 - AluSx SINE Alu -26 286 1 1729 149 0 51 chr12 131027806 131027941 -13254548 - AluJo SINE Alu -195 117 2 500 156 0 10 chr12 131027943 131028039 -13254450 + MER96B DNA MER1_type? 39 133 -284 2656 161 26 50 chr12 131028039 131028203 -13254286 + L1MB7 LINE L1 5648 5814 -370 2244 110 0 3 chr12 131028203 131028513 -13253976 - AluSx SINE Alu -3 309 1 2656 161 26 50 chr12 131028513 131028894 -13253595 + L1MB7 LINE L1 5814 6180 -4 333 83 97 56 chr12 131028894 131028952 -13253537 - L1MB8 LINE L1 -8 6170 6105 1462 153 10 68 chr12 131028952 131029259 -13253230 - AluJb SINE Alu 0 312 24 333 83 97 56 chr12 131029259 131029270 -13253219 - L1MB8 LINE L1 -73 6105 6096 220 155 17 52 chr12 131029276 131029334 -13253155 + T-rich Low_complexity Low_complexity 4 59 0 259 232 11 60 chr12 131029440 131029625 -13252864 + (TTTG)n Simple_repeat Simple_repeat 4 179 0 923 118 110 0 chr12 131029748 131029884 -13252605 + AluJb SINE Alu 157 307 -5 1287 236 59 100 chr12 131029915 131030169 -13252320 + MER77 LTR ERV1 78 341 -326 2056 106 13 23 chr12 131030169 131030471 -13252018 + AluSx SINE Alu 9 307 -5 1287 236 59 100 chr12 131030471 131030864 -13251625 + MER77 LTR ERV1 341 667 0 2735 33 0 0 chr12 131030929 131031231 -13251258 + AluY SINE Alu 3 304 -7 311 260 240 0 chr12 131031458 131031562 -13250927 + L2 LINE L2 3181 3309 -4 401 212 142 9 chr12 131031682 131031795 -13250694 - MLT1J LTR MaLR 0 511 384 2278 106 7 0 chr12 131032010 131032311 -13250178 + AluSx SINE Alu 1 303 -9 200 167 0 0 chr12 131032764 131032794 -13249695 + (CGTG)n Simple_repeat Simple_repeat 2 31 0 285 182 0 36 chr12 131032858 131032913 -13249576 + MIR SINE MIR 198 250 -12 857 237 137 59 chr12 131032934 131033306 -13249183 + MLT1J LTR MaLR 14 414 -97 330 321 139 63 chr12 131033436 131033673 -13248816 - L2 LINE L2 -4 3268 3014 720 160 179 21 chr12 131033681 131033720 -13248769 - MLT1A1 LTR MaLR 0 365 334 2067 122 54 0 chr12 131033720 131034014 -13248475 + AluSx SINE Alu 1 310 -2 720 160 179 21 chr12 131034014 131034242 -13248247 - MLT1A1 LTR MaLR -31 334 3 2278 111 0 3 chr12 131034482 131034779 -13247710 - AluSx SINE Alu -16 296 1 242 174 22 0 chr12 131035273 131035319 -13247170 + tRNA-Ser-TCC tRNA tRNA 1 47 -38 2395 109 0 0 chr12 131035335 131035647 -13246842 + AluSx SINE Alu 1 312 0 2281 109 0 13 chr12 131035652 131035963 -13246526 + AluSx SINE Alu 1 307 -5 1471 240 44 23 chr12 131035966 131036399 -13246090 - MER119 DNA MER1_type -86 497 56 382 269 193 12 chr12 131036697 131036868 -13245621 - MIR SINE MIR -60 202 1 194 330 22 22 chr12 131036938 131036973 -13245516 - MIR SINE MIR -121 141 107 723 207 25 6 chr12 131036973 131037141 -13245348 + MIR SINE MIR 4 172 -36 2261 120 0 0 chr12 131037159 131037460 -13245029 + AluSx SINE Alu 1 301 -11 325 219 142 77 chr12 131037780 131037935 -13244554 - MER63B DNA MER1_type -271 165 1 682 242 134 74 chr12 131038028 131038150 -13244339 + MER113 DNA MER1_type? 30 143 -378 2570 68 6 0 chr12 131038150 131038461 -13244028 + AluSp SINE Alu 1 313 0 682 242 134 74 chr12 131038461 131038506 -13243983 + MER113 DNA MER1_type? 143 184 -337 2062 127 3 23 chr12 131038506 131038813 -13243676 + AluSx SINE Alu 1 301 -11 682 242 134 74 chr12 131038813 131039078 -13243411 + MER113 DNA MER1_type? 184 489 -32 238 310 97 19 chr12 131039121 131039286 -13243203 + L2 LINE L2 2791 2968 -304 238 242 0 30 chr12 131039411 131039477 -13243012 - MER5A DNA MER1_type -23 166 103 644 168 28 0 chr12 131039503 131039610 -13242879 - AluJb SINE Alu -175 137 28 2210 134 0 10 chr12 131039723 131039858 -13242631 + AluSx SINE Alu 1 136 -176 2299 107 0 3 chr12 131039858 131040157 -13242332 + AluSc SINE Alu 1 298 -11 2210 134 0 10 chr12 131040157 131040328 -13242161 + AluSx SINE Alu 136 304 -8 226 310 35 26 chr12 131040555 131040671 -13241818 + L2 LINE L2 3173 3289 -24 197 258 81 0 chr12 131040855 131040917 -13241572 - MER5A DNA MER1_type -27 162 96 186 270 56 79 chr12 131040873 131040999 -13241490 + MER5A DNA MER1_type 61 183 -6 * 482 254 102 11 chr12 131041215 131041392 -13241097 + MIR SINE MIR 64 256 -6 720 204 55 111 chr12 131041403 131041565 -13240924 - MIR SINE MIR 0 262 93 888 116 0 8 chr12 131041565 131041694 -13240795 + FLAM_C SINE Alu 1 128 -5 1954 162 13 0 chr12 131041699 131042007 -13240482 + AluJo SINE Alu 1 312 0 720 204 55 111 chr12 131042007 131042073 -13240416 - MIR SINE MIR -173 89 41 2107 128 7 0 chr12 131042700 131042996 -13239493 + AluSx SINE Alu 1 298 -14 272 271 0 0 chr12 131043272 131043342 -13239147 + MLT1K LTR MaLR 517 586 -2 920 125 0 0 chr12 131043419 131043539 -13238950 + FLAM_C SINE Alu 7 126 -17 1621 186 0 24 chr12 131043549 131043845 -13238644 + AluJo SINE Alu 1 289 -23 1871 133 3 44 chr12 131043852 131044146 -13238343 + AluJo SINE Alu 1 282 -30 213 39 0 0 chr12 131044156 131044182 -13238307 + (GA)n Simple_repeat Simple_repeat 1 26 0 189 171 0 0 chr12 131044439 131044480 -13238009 + MIR SINE MIR 82 122 -86 1908 136 7 26 chr12 131044738 131044907 -13237582 - AluSx SINE Alu -11 301 139 2454 79 0 3 chr12 131044907 131045211 -13237278 - AluSp SINE Alu -10 303 1 1908 136 7 26 chr12 131045211 131045343 -13237146 - AluSx SINE Alu -173 139 6 378 272 8 64 chr12 131045534 131045659 -13236830 + MIR3 SINE MIR 37 154 -54 2639 50 0 0 chr12 131045705 131046004 -13236485 + AluY SINE Alu 5 303 -8 987 158 36 6 chr12 131046004 131046169 -13236320 + AluSp SINE Alu 134 303 -10 1793 172 44 23 chr12 131046202 131046591 -13235898 + L1MB3 LINE L1 5654 6050 -133 1670 147 4 19 chr12 131046591 131046691 -13235798 + AluJb SINE Alu 36 136 -176 2486 94 0 0 chr12 131046691 131046999 -13235490 + AluSc SINE Alu 1 308 -1 1670 147 4 19 chr12 131046999 131047164 -13235325 + AluJb SINE Alu 136 297 -15 1507 120 10 5 chr12 131047740 131047949 -13234540 - AluJb SINE Alu -16 296 87 1982 86 82 14 chr12 131047975 131048266 -13234223 - AluY SINE Alu 0 311 1 2142 119 30 0 chr12 131048330 131048633 -13233856 - AluSx SINE Alu 0 312 1 397 208 0 0 chr12 131049090 131049167 -13233322 - MIR SINE MIR -3 259 183 2119 123 0 3 chr12 131049214 131049528 -13232961 - AluSx SINE Alu 0 313 1 783 172 0 31 chr12 131049539 131049667 -13232822 - AluJb SINE Alu -186 126 3 2274 110 0 22 chr12 131049710 131050027 -13232462 + AluSx SINE Alu 1 310 -2 1675 147 58 41 chr12 131050234 131050356 -13232133 + AluJo SINE Alu 1 119 -193 204 40 0 0 chr12 131050356 131050381 -13232108 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1675 147 58 41 chr12 131050381 131050550 -13231939 + AluJo SINE Alu 119 297 -15 971 176 12 0 chr12 131050586 131050751 -13231738 + FRAM SINE Alu 1 162 -14 2160 106 7 0 chr12 131051602 131051877 -13230612 + AluSx SINE Alu 13 289 -23 327 46 103 0 chr12 131051877 131051964 -13230525 + (TA)n Simple_repeat Simple_repeat 1 96 0 323 176 83 74 chr12 131051964 131052072 -13230417 + L1MCa LINE L1 1957 2065 -4361 322 237 44 59 chr12 131052074 131052209 -13230280 + L1MCa LINE L1 1933 2065 -4361 442 104 79 6 chr12 131052209 131052373 -13230116 + (TA)n Simple_repeat Simple_repeat 1 176 0 328 129 0 119 chr12 131052374 131052475 -13230014 + (TTATA)n Simple_repeat Simple_repeat 1 89 0 1337 209 71 89 chr12 131052746 131053240 -13229249 + Charlie4a DNA MER1_type 24 508 0 701 229 80 16 chr12 131053393 131053594 -13228895 + MIR SINE MIR 53 261 -1 1483 190 57 7 chr12 131053647 131053926 -13228563 - AluJb SINE Alu -19 293 1 211 242 152 0 chr12 131053926 131053992 -13228497 + MIR3 SINE MIR 123 198 -10 282 300 64 0 chr12 131054033 131054143 -13228346 + L1ME LINE L1 5547 5663 -458 2317 96 3 3 chr12 131054614 131054915 -13227574 + AluSc SINE Alu 1 301 -8 29 0 0 0 chr12 131055088 131055117 -13227372 + AT_rich Low_complexity Low_complexity 1 29 0 2201 113 20 0 chr12 131055118 131055411 -13227078 - AluSx SINE Alu -13 299 1 2108 132 3 0 chr12 131056211 131056514 -13225975 - AluSx SINE Alu -8 304 1 2426 70 0 29 chr12 131056733 131057046 -13225443 + AluSp SINE Alu 1 304 -9 547 319 70 80 chr12 131057314 131057423 -13225066 + L2 LINE L2 2860 2969 -303 2015 130 3 23 chr12 131057423 131057731 -13224758 - AluSx SINE Alu -10 302 1 547 319 70 80 chr12 131057731 131058035 -13224454 + L2 LINE L2 2969 3269 -3 722 161 40 13 chr12 131058254 131058403 -13224086 - L1MC2 LINE L1 -24 6320 6168 2792 149 22 0 chr12 131058404 131058893 -13223596 - L1MC2 LINE L1 -209 6135 5636 1706 244 90 5 chr12 131058895 131059498 -13222991 - L1M4 LINE L1 -3254 2892 2239 2160 96 10 19 chr12 131059501 131059814 -13222675 + AluY SINE Alu 1 310 -1 2112 122 10 10 chr12 131059823 131060134 -13222355 + AluSx SINE Alu 1 311 -1 2151 114 13 0 chr12 131060147 131060445 -13222044 + AluSx SINE Alu 1 302 -10 1155 160 0 0 chr12 131060522 131060703 -13221786 - AluSg/x SINE Alu -1 309 129 292 75 113 19 chr12 131060854 131060907 -13221582 + AluY SINE Alu 137 194 -107 2366 88 3 7 chr12 131060907 131061213 -13221276 - AluSg SINE Alu -5 305 1 557 198 0 24 chr12 131061214 131061340 -13221149 + L1MA10 LINE L1 6210 6332 -2 2187 129 53 31 chr12 131061819 131062175 -13220314 - THE1B LTR MaLR 0 364 1 2387 83 10 0 chr12 131062212 131062513 -13219976 + AluSp SINE Alu 1 304 -9 1318 123 0 0 chr12 131062513 131062692 -13219797 + AluSg/x SINE Alu 134 312 0 353 271 19 28 chr12 131062712 131062819 -13219670 - MIR SINE MIR -71 191 86 2441 106 0 3 chr12 131063137 131063449 -13219040 + AluSx SINE Alu 1 311 -1 2227 127 0 6 chr12 131063606 131063920 -13218569 + AluSx SINE Alu 1 312 0 729 184 63 32 chr12 131064033 131064081 -13218408 - MLT1B LTR MaLR 0 390 345 2197 138 0 10 chr12 131064081 131064392 -13218097 - AluSx SINE Alu -4 308 1 729 184 63 32 chr12 131064392 131064533 -13217956 - MLT1B LTR MaLR -45 345 195 2240 121 3 3 chr12 131064553 131064866 -13217623 - AluSq SINE Alu 0 313 1 1152 186 49 0 chr12 131064873 131065077 -13217412 - AluSg/x SINE Alu 0 312 99 228 128 64 0 chr12 131065077 131065124 -13217365 + MSTB1 LTR MaLR 381 430 -2 739 201 0 8 chr12 131065236 131065370 -13217119 - FLAM_C SINE Alu 0 133 1 351 0 0 0 chr12 131065549 131065588 -13216901 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 252 0 0 0 chr12 131065588 131065616 -13216873 + (GGA)n Simple_repeat Simple_repeat 1 28 0 430 254 98 0 chr12 131065638 131065811 -13216678 + MLT1J2 LTR MaLR 22 211 -239 268 205 77 26 chr12 131066011 131066089 -13216400 + MLT1J2 LTR MaLR 369 450 0 270 257 139 20 chr12 131066103 131066204 -13216285 - MIR SINE MIR -118 144 32 186 43 0 0 chr12 131066224 131066247 -13216242 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1828 128 49 0 chr12 131066268 131066534 -13215955 + AluSx SINE Alu 21 299 -13 763 245 0 7 chr12 131066534 131066681 -13215808 - FRAM SINE Alu -30 146 1 1178 139 10 40 chr12 131066692 131066894 -13215595 - AluSg/x SINE Alu -6 306 111 1917 46 0 0 chr12 131066935 131067154 -13215335 - AluY SINE Alu -7 304 86 2488 77 0 6 chr12 131067195 131067508 -13214981 + AluY SINE Alu 1 311 0 1054 191 0 0 chr12 131067529 131067691 -13214798 + FAM SINE Alu 5 166 -9 532 254 32 55 chr12 131067731 131067951 -13214538 - L1ME LINE L1 -332 5789 5575 1351 130 45 22 chr12 131068157 131068380 -13214109 - AluJo SINE Alu 0 312 85 252 173 120 0 chr12 131068631 131068706 -13213783 - L1MEc LINE L1 -5582 814 731 372 239 0 67 chr12 131068720 131068854 -13213635 - L1MC4a LINE L1 -1873 5935 5811 1198 141 11 16 chr12 131068859 131069050 -13213439 - AluJo SINE Alu -117 195 6 434 226 14 17 chr12 131069056 131069213 -13213276 - L1MC4a LINE L1 -299 5822 5668 270 326 0 22 chr12 131069218 131069310 -13213179 - L2 LINE L2 -51 3262 3173 1530 158 16 85 chr12 131069314 131069443 -13213046 + AluJb SINE Alu 1 137 -175 180 0 0 0 chr12 131069443 131069463 -13213026 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1530 158 16 85 chr12 131069463 131069649 -13212840 + AluJb SINE Alu 137 294 -18 797 219 163 73 chr12 131069870 131070069 -13212420 - LTR16A1 LTR ERVL -10 447 267 2277 105 3 0 chr12 131070069 131070363 -13212126 - AluSx SINE Alu -17 295 1 797 219 163 73 chr12 131070363 131070573 -13211916 - LTR16A1 LTR ERVL -190 267 1 1106 129 94 30 chr12 131070676 131070731 -13211758 + AluJb SINE Alu 84 134 -178 2338 97 3 0 chr12 131070731 131071030 -13211459 + AluSp SINE Alu 1 300 -13 1106 129 94 30 chr12 131071030 131071175 -13211314 + AluJb SINE Alu 134 297 -15 204 40 0 0 chr12 131071175 131071200 -13211289 + (GA)n Simple_repeat Simple_repeat 2 26 0 548 282 190 13 chr12 131071228 131071585 -13210904 - L2 LINE L2 -256 3016 2602 2368 173 32 38 chr12 131071593 131071738 -13210751 + L1MB7 LINE L1 5669 5813 -371 2380 114 0 0 chr12 131071738 131072045 -13210444 + AluSx SINE Alu 1 307 -5 2368 173 32 38 chr12 131072045 131072402 -13210087 + L1MB7 LINE L1 5813 6168 -16 213 200 0 0 chr12 131072402 131072437 -13210052 + polypurine Low_complexity Low_complexity 3 37 0 2250 128 0 0 chr12 131072438 131072735 -13209754 + AluSx SINE Alu 1 297 -15 1054 273 71 62 chr12 131072735 131073414 -13209075 - L1ME LINE L1 -5310 760 76 2232 130 0 9 chr12 131073434 131073750 -13208739 - AluSq SINE Alu 0 313 1 1915 166 0 25 chr12 131073754 131074074 -13208415 - AluJo SINE Alu 0 312 1 2187 129 3 10 chr12 131074084 131074395 -13208094 - AluSx SINE Alu -3 309 1 554 244 46 46 chr12 131074465 131074662 -13207827 - MIR SINE MIR -55 207 11 327 318 84 0 chr12 131074768 131074875 -13207614 + MER5A DNA MER1_type 17 132 -57 2257 117 0 0 chr12 131074877 131075175 -13207314 - AluSx SINE Alu -14 298 1 1833 139 42 21 chr12 131075179 131075467 -13207022 - AluSx SINE Alu -16 296 3 33 43 0 0 chr12 131075855 131075902 -13206587 + AT_rich Low_complexity Low_complexity 1 47 0 222 37 0 0 chr12 131076212 131076239 -13206250 + (GA)n Simple_repeat Simple_repeat 2 28 0 2142 154 6 0 chr12 131077064 131077375 -13205114 - AluSq SINE Alu 0 313 1 23 0 0 0 chr12 131077377 131077400 -13205089 + AT_rich Low_complexity Low_complexity 1 23 0 1191 195 4 8 chr12 131077577 131077839 -13204650 + L1MB3 LINE L1 5572 5832 -351 1723 152 82 0 chr12 131077839 131078109 -13204380 + AluJb SINE Alu 1 292 -20 522 0 0 0 chr12 131078122 131078180 -13204309 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 449 204 282 0 chr12 131078561 131078612 -13203877 - MLT1L LTR MaLR -18 597 562 207 0 0 0 chr12 131078612 131078635 -13203854 + (GA)n Simple_repeat Simple_repeat 2 24 0 449 204 282 0 chr12 131078635 131078725 -13203764 - MLT1L LTR MaLR -53 562 416 378 176 0 0 chr12 131078772 131078857 -13203632 + CT-rich Low_complexity Low_complexity 3 87 0 1517 164 68 4 chr12 131078857 131079120 -13203369 - AluJo SINE Alu -32 280 1 373 278 145 57 chr12 131079125 131079326 -13203163 - MLT1L LTR MaLR -345 270 41 1660 117 25 42 chr12 131079326 131079651 -13202838 - AluJo SINE Alu 0 324 5 373 278 145 57 chr12 131079651 131079696 -13202793 - MLT1L LTR MaLR -574 41 1 688 324 156 14 chr12 131079886 131080521 -13201968 + L2 LINE L2 310 1034 -2280 539 324 17 1 chr12 131080740 131080948 -13201541 + MLT1L LTR MaLR 375 612 -3 229 345 35 0 chr12 131080958 131081045 -13201444 + L2 LINE L2 1098 1187 -2127 580 195 30 6 chr12 131081826 131081995 -13200494 + CT-rich Low_complexity Low_complexity 2 174 0 1491 176 59 21 chr12 131082069 131082391 -13200098 - AluJb SINE Alu 0 343 11 707 238 78 10 chr12 131082471 131082664 -13199825 + MER3 DNA MER1_type 2 207 -2 2314 110 0 7 chr12 131082833 131083142 -13199347 + AluSg SINE Alu 1 307 -3 1417 108 0 0 chr12 131083878 131084064 -13198425 - AluSg/x SINE Alu -1 311 126 1935 180 0 3 chr12 131084540 131084846 -13197643 - AluJb SINE Alu -7 305 1 258 302 108 36 chr12 131085134 131085273 -13197216 + L2 LINE L2 2639 2787 -527 506 146 95 183 chr12 131085297 131085407 -13197082 - LTR16C LTR ERVL -42 449 331 2130 91 0 0 chr12 131085407 131085681 -13196808 + AluSx SINE Alu 1 274 -38 506 146 95 183 chr12 131085681 131085844 -13196645 - LTR16C LTR ERVL -160 331 200 314 123 18 0 chr12 131085875 131085932 -13196557 + CT-rich Low_complexity Low_complexity 1 58 0 634 253 23 17 chr12 131086547 131086721 -13195768 + MLT1I LTR MaLR 227 401 -8 1911 148 0 10 chr12 131086807 131087097 -13195392 + AluJo SINE Alu 5 291 -21 21 0 0 0 chr12 131087097 131087118 -13195371 + AT_rich Low_complexity Low_complexity 1 21 0 370 346 28 49 chr12 131087118 131087404 -13195085 - L2 LINE L2 -1230 2084 1805 2064 146 13 0 chr12 131087448 131087795 -13194694 + AluSx SINE Alu 1 351 0 1217 148 0 5 chr12 131087834 131088051 -13194438 - L1MB7 LINE L1 -235 5949 5734 320 286 10 20 chr12 131088121 131088219 -13194270 - MIR SINE MIR -165 97 1 760 223 112 0 chr12 131088250 131088438 -13194051 - LTR33 LTR ERVL -1 520 312 3192 169 81 3 chr12 131088579 131089200 -13193289 + LTR65 LTR ERV1 1 669 0 3061 176 43 34 chr12 131090477 131090821 -13191668 - L1MA10 LINE L1 0 6334 5994 936 132 0 0 chr12 131090821 131090950 -13191539 - FLAM_C SINE Alu -3 130 2 3061 176 43 34 chr12 131090950 131091293 -13191196 - L1MA10 LINE L1 -340 5994 5487 2404 93 0 0 chr12 131091464 131091764 -13190725 - AluSq SINE Alu -13 300 1 551 208 22 196 chr12 131091800 131092117 -13190372 - L2 LINE L2 -488 2826 2565 480 232 79 17 chr12 131092124 131092301 -13190188 - L1MC5 LINE L1 -29 7932 7745 1992 237 56 11 chr12 131092304 131092840 -13189649 - L2 LINE L2 -772 2542 1983 2137 130 3 7 chr12 131092844 131093145 -13189344 + AluJb SINE Alu 5 304 -8 610 301 104 39 chr12 131093220 131093606 -13188883 - L2 LINE L2 -560 2754 2344 819 204 14 0 chr12 131093738 131093885 -13188604 - FRAM SINE Alu -30 146 1 249 370 151 0 chr12 131093970 131094162 -13188327 - L2 LINE L2 -1321 1993 1773 328 256 116 8 chr12 131094700 131094821 -13187668 - LTR16C LTR ERVL 0 491 358 1608 148 7 41 chr12 131094830 131095233 -13187256 - AluJb SINE Alu 0 435 42 294 181 97 42 chr12 131095234 131095306 -13187183 - AluJo SINE Alu -127 175 100 717 181 0 0 chr12 131095316 131095432 -13187057 + AluJb SINE Alu 180 295 -17 2261 97 7 10 chr12 131095660 131095968 -13186521 + AluSx SINE Alu 1 307 -5 665 221 60 74 chr12 131095995 131096294 -13186195 + MLT1H LTR MaLR 29 323 -226 327 348 0 0 chr12 131096299 131096388 -13186101 + L1MC4 LINE L1 6614 6702 -1340 * 367 232 12 46 chr12 131096338 131096455 -13186034 - L1MC4 LINE L1 -1339 6983 1959 222 147 59 0 chr12 131096456 131096524 -13185965 + (TA)n Simple_repeat Simple_repeat 1 72 0 304 213 29 110 chr12 131096524 131096634 -13185855 - L1MC4 LINE L1 -4335 2091 1992 2344 100 0 3 chr12 131096634 131096935 -13185554 - AluSq SINE Alu -13 300 1 304 213 29 110 chr12 131096935 131096960 -13185529 - L1MC4 LINE L1 -4434 1992 1967 691 225 71 18 chr12 131097089 131097336 -13185153 - PABL_B LTR ERV1 -4 663 393 2127 140 0 0 chr12 131097388 131097680 -13184809 - AluSx SINE Alu -19 293 2 673 118 0 31 chr12 131097793 131097920 -13184569 - LTR19C LTR ERV1 -350 429 307 1637 163 266 53 chr12 131098051 131098420 -13184069 + MLT2B3 LTR ERVL 3 488 -66 2254 88 143 29 chr12 131098420 131098607 -13183882 + MSTA LTR MaLR 1 165 -263 1772 133 12 0 chr12 131098607 131098862 -13183627 + AluSx SINE Alu 42 299 -13 2254 88 143 29 chr12 131098862 131099058 -13183431 + MSTA LTR MaLR 165 428 0 1637 163 266 53 chr12 131099058 131099142 -13183347 + MLT2B3 LTR ERVL 488 553 -1 318 224 40 72 chr12 131099142 131099199 -13183290 + MLT1K LTR MaLR 458 515 -73 1810 177 7 13 chr12 131099199 131099509 -13182980 - AluJo SINE Alu -4 308 1 318 224 40 72 chr12 131099509 131099576 -13182913 + MLT1K LTR MaLR 515 578 -10 259 291 27 36 chr12 131099582 131099692 -13182797 - L2 LINE L2 -2207 1107 999 916 123 65 0 chr12 131100242 131100397 -13182092 - MLT1J LTR MaLR -346 165 1 473 207 11 0 chr12 131100669 131100756 -13181733 - L2 LINE L2 0 3272 3185 852 283 44 0 chr12 131100777 131101028 -13181461 + MIR SINE MIR 1 262 0 1984 130 0 38 chr12 131101130 131101445 -13181044 - AluSx SINE Alu -9 303 1 407 248 27 40 chr12 131101515 131101664 -13180825 + LTR16A1 LTR ERVL 1 147 -310 937 149 0 80 chr12 131101687 131101862 -13180627 + AluSg/x SINE Alu 150 310 0 234 230 53 13 chr12 131101869 131101965 -13180524 + L1M LINE L1 5258 5356 -977 1406 183 67 11 chr12 131102097 131102381 -13180108 + AluJo SINE Alu 1 300 -12 2407 112 0 0 chr12 131102494 131102806 -13179683 + AluSx SINE Alu 1 312 0 848 179 22 22 chr12 131103761 131103940 -13178549 + AluJo SINE Alu 123 301 -11 531 250 6 64 chr12 131103940 131104073 -13178416 - MER3 DNA MER1_type 0 162 40 1634 163 25 7 chr12 131104073 131104355 -13178134 + AluJb SINE Alu 5 291 -21 531 250 6 64 chr12 131104355 131104393 -13178096 - MER3 DNA MER1_type -122 40 1 612 257 7 0 chr12 131104476 131104628 -13177861 - L1MD2 LINE L1 -12 6347 6195 1036 254 40 20 chr12 131104629 131104932 -13177557 - L1MD2 LINE L1 -216 6143 5835 1874 149 10 3 chr12 131104946 131105247 -13177242 - AluSx SINE Alu -5 307 5 25 0 0 0 chr12 131105434 131105459 -13177030 + AT_rich Low_complexity Low_complexity 1 25 0 681 134 7 99 chr12 131105664 131105806 -13176683 + FLAM_A SINE Alu 10 138 -4 1393 136 25 25 chr12 131105813 131106049 -13176440 - AluYb8 SINE Alu 0 318 83 2204 74 64 7 chr12 131106181 131106477 -13176012 - AluSq SINE Alu 0 313 1 268 43 43 0 chr12 131107017 131107063 -13175426 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2144 81 44 34 chr12 131107213 131107510 -13174979 + AluSx SINE Alu 10 309 -3 306 228 62 117 chr12 131107846 131107991 -13174498 + MIR3 SINE MIR 5 141 -67 351 0 0 0 chr12 131108066 131108105 -13174384 + (ATG)n Simple_repeat Simple_repeat 2 40 0 822 138 0 0 chr12 131108181 131108297 -13174192 + FLAM_C SINE Alu 1 116 -17 59 27 0 0 chr12 131108297 131108370 -13174119 + AT_rich Low_complexity Low_complexity 1 73 0 2400 74 16 19 chr12 131108456 131108768 -13173721 + AluY SINE Alu 1 311 0 1743 169 35 7 chr12 131109100 131109384 -13173105 + AluJo SINE Alu 1 292 -20 2009 125 6 58 chr12 131110107 131110436 -13172053 - AluSx SINE Alu 0 312 1 2371 106 0 3 chr12 131110442 131110754 -13171735 - AluSx SINE Alu -1 311 1 481 222 34 0 chr12 131111419 131111536 -13170953 + AluSq/x SINE Alu 6 126 -186 2287 93 3 0 chr12 131111686 131111976 -13170513 + AluSg SINE Alu 3 293 -17 24 67 0 0 chr12 131111979 131112024 -13170465 + AT_rich Low_complexity Low_complexity 1 45 0 485 241 135 0 chr12 131112120 131112261 -13170228 + MIR SINE MIR 103 262 0 2349 109 0 3 chr12 131112346 131112650 -13169839 + AluSx SINE Alu 1 303 -9 259 137 27 0 chr12 131112702 131112775 -13169714 + (TA)n Simple_repeat Simple_repeat 2 76 0 1814 172 3 16 chr12 131112944 131113247 -13169242 - AluJb SINE Alu -13 299 1 2123 141 3 6 chr12 131113261 131113574 -13168915 - AluJb SINE Alu 0 312 1 1117 255 92 78 chr12 131114699 131115264 -13167225 - MLT1K LTR MaLR 0 588 16 276 53 0 0 chr12 131116029 131116067 -13166422 + (A)n Simple_repeat Simple_repeat 1 38 0 1301 142 38 9 chr12 131116193 131116405 -13166084 + AluJb SINE Alu 85 302 -10 586 331 53 16 chr12 131117114 131117163 -13165326 - MIR SINE MIR -3 259 213 1897 158 7 19 chr12 131117163 131117473 -13165016 - AluJb SINE Alu -6 306 1 586 331 53 16 chr12 131117473 131117668 -13164821 - MIR SINE MIR -49 213 6 334 257 0 0 chr12 131117689 131117759 -13164730 - L2 LINE L2 -18 3295 3226 340 227 0 0 chr12 131117827 131117893 -13164596 + L2 LINE L2 3207 3272 0 256 309 24 0 chr12 131118334 131118457 -13164032 + G-rich Low_complexity Low_complexity 5 130 0 * 276 267 0 0 chr12 131118361 131118531 -13163958 + G-rich Low_complexity Low_complexity 1 170 0 243 226 6 31 chr12 131118608 131118773 -13163716 + G-rich Low_complexity Low_complexity 1 160 0 963 243 35 73 chr12 131118910 131118963 -13163526 + L2 LINE L2 2951 3004 -309 1988 80 56 0 chr12 131118963 131119214 -13163275 - AluY SINE Alu -9 302 38 963 243 35 73 chr12 131119214 131119311 -13163178 + L2 LINE L2 3004 3103 -210 405 0 0 0 chr12 131119311 131119356 -13163133 + (CA)n Simple_repeat Simple_repeat 2 46 0 963 243 35 73 chr12 131119356 131119575 -13162914 + L2 LINE L2 3103 3307 -6 585 268 7 0 chr12 131119768 131119910 -13162579 - FRAM SINE Alu -13 163 21 1894 133 16 13 chr12 131120276 131120585 -13161904 + AluSp SINE Alu 4 313 0 430 303 35 30 chr12 131120611 131120809 -13161680 + MLT1C LTR MaLR 193 391 -76 2203 88 39 0 chr12 131120819 131121104 -13161385 + AluSx SINE Alu 1 296 -16 2150 92 3 14 chr12 131121105 131121409 -13161080 + AluSx SINE Alu 1 301 0 2227 107 0 19 chr12 131121540 131121857 -13160632 - AluJo SINE Alu -1 311 1 331 209 105 0 chr12 131122705 131122791 -13159698 + Tigger8 DNA MER2_type 232 326 -340 2175 105 18 0 chr12 131122791 131123077 -13159412 + AluSx SINE Alu 1 291 -21 1955 174 10 0 chr12 131123170 131123464 -13159025 + AluJb SINE Alu 1 297 -15 323 320 34 14 chr12 131123464 131123602 -13158887 + L2 LINE L2 2368 2511 -803 927 221 11 16 chr12 131123913 131124103 -13158386 + MER5A DNA MER1_type 1 189 0 280 293 0 95 chr12 131124375 131124446 -13158043 - MIR SINE MIR -55 207 150 2148 101 7 23 chr12 131124446 131124752 -13157737 + AluSx SINE Alu 1 301 -11 280 293 0 95 chr12 131124752 131124796 -13157693 - MIR SINE MIR -112 150 103 2413 82 13 0 chr12 131124796 131125100 -13157389 + AluSx SINE Alu 1 308 -4 717 219 112 39 chr12 131125189 131125281 -13157208 + MER97b DNA MER1_type? 1 85 -968 1642 168 22 50 chr12 131125281 131125602 -13156887 + AluJo SINE Alu 1 312 0 717 219 112 39 chr12 131125602 131125742 -13156747 + MER97b DNA MER1_type? 85 250 -803 29 60 0 0 chr12 131125760 131125810 -13156679 + AT_rich Low_complexity Low_complexity 1 50 0 2324 98 0 0 chr12 131125812 131126108 -13156381 - AluSx SINE Alu -16 296 1 2033 120 10 3 chr12 131126116 131126408 -13156081 - AluSx SINE Alu -9 303 10 2515 77 0 0 chr12 131126965 131127265 -13155224 + AluY SINE Alu 1 300 -11 50 75 0 0 chr12 131127315 131127421 -13155068 + AT_rich Low_complexity Low_complexity 1 106 0 1581 157 36 49 chr12 131127435 131127604 -13154885 - AluJo SINE Alu -11 301 136 1707 192 0 7 chr12 131127604 131127911 -13154578 - AluJb SINE Alu -7 305 1 1581 157 36 49 chr12 131127911 131128046 -13154443 - AluJo SINE Alu -176 136 1 2126 198 65 29 chr12 131128047 131128394 -13154095 + MER97a DNA MER1_type? 277 655 -239 2469 91 3 0 chr12 131128394 131128701 -13153788 - AluSp SINE Alu -5 308 1 2126 198 65 29 chr12 131128701 131128934 -13153555 + MER97a DNA MER1_type? 655 878 -16 2421 43 0 11 chr12 131128966 131129266 -13153223 + AluY SINE Alu 6 302 0 224 331 57 40 chr12 131129267 131129391 -13153098 - L3 LINE CR1 -323 1254 1129 442 275 119 19 chr12 131129416 131129576 -13152913 + MIR SINE MIR 22 197 -65 619 178 0 0 chr12 131129832 131129939 -13152550 + L1ME1 LINE L1 5448 5554 -612 232 91 0 0 chr12 131129941 131129974 -13152515 + AluJb SINE Alu 1 33 -275 4430 135 90 47 chr12 131129975 131130980 -13151509 + pTR5 LTR ERV1 743 1999 -439 290 235 30 76 chr12 131130980 131131112 -13151377 + LTR30 LTR ERV1 517 642 -80 2322 98 0 0 chr12 131131112 131131439 -13151050 + pTR5 LTR ERV1 66 392 -2046 1523 149 59 8 chr12 131131439 131131694 -13150795 + AluJb SINE Alu 31 298 -14 708 176 81 0 chr12 131131564 131131700 -13150789 + AluJb SINE Alu 158 304 -8 1912 117 79 14 chr12 131131706 131131997 -13150492 + AluSx SINE Alu 2 311 -1 1594 214 40 11 chr12 131131997 131132367 -13150122 + L1ME1 LINE L1 5589 5969 -197 1109 147 31 16 chr12 131132367 131132558 -13149931 + AluSx SINE Alu 3 196 -116 2220 113 3 0 chr12 131132561 131132863 -13149626 - AluSx SINE Alu -9 303 1 380 208 0 0 chr12 131133320 131133397 -13149092 - MIR SINE MIR -3 259 183 1862 166 0 3 chr12 131133470 131133759 -13148730 - AluSx SINE Alu -24 288 1 721 183 0 36 chr12 131133761 131133898 -13148591 - FLAM_C SINE Alu -9 134 3 460 264 0 0 chr12 131134457 131134567 -13147922 + FRAM SINE Alu 59 168 -8 2193 89 0 86 chr12 131135151 131135478 -13147011 + AluSx SINE Alu 1 299 -13 330 163 0 0 chr12 131135571 131135620 -13146869 - FLAM SINE Alu -11 122 74 2274 82 7 0 chr12 131135731 131136011 -13146478 - AluSp SINE Alu -31 282 1 493 200 8 24 chr12 131136012 131136137 -13146352 + L1MA10 LINE L1 6210 6332 -2 2047 138 48 25 chr12 131136616 131136972 -13145517 - THE1B LTR MaLR 0 364 1 2088 137 0 13 chr12 131137009 131137316 -13145173 + AluSx SINE Alu 1 303 -9 206 315 54 54 chr12 131137316 131137441 -13145048 - L3 LINE CR1 -324 1253 1129 357 314 107 0 chr12 131137467 131137626 -13144863 + MIR SINE MIR 22 197 -65 774 178 58 31 chr12 131138201 131138249 -13144240 - MLT1B LTR MaLR 0 390 345 2199 138 0 10 chr12 131138249 131138560 -13143929 - AluSx SINE Alu -4 308 1 774 178 58 31 chr12 131138560 131138702 -13143787 - MLT1B LTR MaLR -45 345 195 2244 121 3 3 chr12 131138722 131139035 -13143454 - AluSq SINE Alu 0 313 1 2310 128 0 0 chr12 131139042 131139354 -13143135 - AluSx SINE Alu 0 312 1 684 209 15 6 chr12 131139372 131139540 -13142949 - MIR SINE MIR -36 172 5 182 330 22 22 chr12 131139484 131139575 -13142914 + MIR SINE MIR 51 141 -121 * 418 294 17 11 chr12 131139953 131140130 -13142359 + L1ME LINE L1 1005 1182 -5023 376 92 0 11 chr12 131140130 131140198 -13142291 + AluSq/x SINE Alu 85 135 -167 2169 117 0 0 chr12 131140198 131140511 -13141978 + AluSx SINE Alu 2 314 0 616 214 10 84 chr12 131140511 131140624 -13141865 + L1ME LINE L1 2007 2127 -4269 1908 149 3 3 chr12 131140624 131140920 -13141569 + AluSq SINE Alu 1 296 -17 616 214 10 84 chr12 131140920 131141114 -13141375 + L1ME LINE L1 2127 2291 -4105 672 200 56 77 chr12 131141252 131141403 -13141086 - MLT1B LTR MaLR -314 191 43 2101 112 10 3 chr12 131141403 131141697 -13140792 - AluSp SINE Alu -16 297 2 672 200 56 77 chr12 131141697 131141740 -13140749 - MLT1B LTR MaLR -462 43 1 236 311 198 18 chr12 131141773 131141940 -13140549 - MIR SINE MIR -57 205 9 350 193 0 45 chr12 131142089 131142177 -13140312 + AluJ/FLAM SINE Alu 14 97 -205 2410 96 3 0 chr12 131142610 131142913 -13139576 - AluSg SINE Alu -6 304 1 1524 207 3 3 chr12 131143143 131143433 -13139056 - AluJb SINE Alu -10 302 13 218 253 12 66 chr12 131143536 131143702 -13138787 + G-rich Low_complexity Low_complexity 4 160 0 366 184 0 0 chr12 131144450 131144526 -13137963 + (TG)n Simple_repeat Simple_repeat 1 76 0 239 283 11 87 chr12 131146024 131146116 -13136373 - MIR3 SINE MIR -54 154 70 603 217 126 23 chr12 131146506 131146681 -13135808 + MIR SINE MIR 70 262 0 316 275 66 0 chr12 131146914 131147005 -13135484 - MIR SINE MIR -67 141 45 341 311 99 25 chr12 131147109 131147270 -13135219 - L3 LINE CR1 -31 1546 1374 225 267 0 0 chr12 131147681 131147726 -13134763 + (CACCAT)n Simple_repeat Simple_repeat 4 48 0 683 277 27 23 chr12 131147735 131147955 -13134534 - MIR SINE MIR -13 249 29 234 81 0 0 chr12 131147978 131148015 -13134474 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 2124 102 11 0 chr12 131148017 131148300 -13134189 - AluSx SINE Alu -26 286 1 245 258 152 0 chr12 131149465 131149531 -13132958 + Charlie8 DNA MER1_type 3 78 -2339 2049 94 4 22 chr12 131149595 131149870 -13132619 + AluSx SINE Alu 1 270 -42 189 171 0 0 chr12 131150268 131150303 -13132186 + (TG)n Simple_repeat Simple_repeat 1 35 0 222 118 0 0 chr12 131150887 131150921 -13131568 + (TAA)n Simple_repeat Simple_repeat 2 35 0 780 275 24 24 chr12 131150927 131151060 -13131429 - MIR SINE MIR -11 251 116 2360 105 3 0 chr12 131151060 131151364 -13131125 + AluSx SINE Alu 1 305 -7 780 275 24 24 chr12 131151364 131151477 -13131012 - MIR SINE MIR -145 117 5 1156 140 25 10 chr12 131151483 131151683 -13130806 + MER3 DNA MER1_type 3 205 -4 558 233 148 29 chr12 131151745 131151969 -13130520 - MIR SINE MIR -10 252 9 1986 163 0 13 chr12 131152535 131152842 -13129647 - AluSx SINE Alu -9 303 1 635 108 0 29 chr12 131153928 131154030 -13128459 - FRAM SINE Alu -7 169 71 562 270 77 31 chr12 131154836 131155058 -13127431 + MIR SINE MIR 31 262 0 926 170 9 0 chr12 131155837 131156174 -13126315 + (TCCA)n Simple_repeat Simple_repeat 1 340 0 385 325 30 0 chr12 131156174 131156340 -13126149 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 330 356 11 11 chr12 131156319 131156499 -13125990 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 * 208 226 21 21 chr12 131156516 131156609 -13125880 + (TCCA)n Simple_repeat Simple_repeat 1 93 0 2297 99 0 3 chr12 131156791 131157105 -13125384 - AluSx SINE Alu 0 312 1 2399 115 0 0 chr12 131157116 131157428 -13125061 - AluSq SINE Alu -1 312 1 2290 88 0 3 chr12 131157705 131158019 -13124470 - AluSx SINE Alu 0 313 1 758 262 33 5 chr12 131158054 131158264 -13124225 - MIR SINE MIR -1 261 46 244 299 70 61 chr12 131158637 131158851 -13123638 - L2 LINE L2 -86 3186 2971 3437 148 14 60 chr12 131158853 131159040 -13123449 + L1MC1 LINE L1 5641 5835 -498 2241 106 7 10 chr12 131159040 131159341 -13123148 + AluSx SINE Alu 1 300 -12 3437 148 14 60 chr12 131159341 131159589 -13122900 + L1MC1 LINE L1 5835 6033 -300 2262 122 0 10 chr12 131159589 131159901 -13122588 + AluJb SINE Alu 1 309 -3 3437 148 14 60 chr12 131159901 131160178 -13122311 + L1MC1 LINE L1 6033 6321 -12 2517 57 10 0 chr12 131160185 131160482 -13122007 + AluY SINE Alu 1 300 -11 1002 173 6 22 chr12 131160498 131160677 -13121812 + FRAM SINE Alu 1 176 0 1810 89 0 0 chr12 131160717 131160941 -13121548 + AluSg/x SINE Alu 79 302 -8 194 343 127 8 chr12 131160951 131161219 -13121270 - L2 LINE L2 -383 2931 2632 2235 106 3 0 chr12 131161941 131162233 -13120256 - AluSx SINE Alu -19 293 1 240 352 84 11 chr12 131162415 131162594 -13119895 - L2 LINE L2 -97 3216 3025 1592 126 129 4 chr12 131162660 131162923 -13119566 + AluSx SINE Alu 1 296 -16 305 253 0 0 chr12 131162980 131163059 -13119430 + MIR SINE MIR 74 152 -110 701 250 27 0 chr12 131163297 131163481 -13119008 - MER5A DNA MER1_type 0 189 1 1579 113 0 0 chr12 131164003 131164215 -13118274 + AluSg/x SINE Alu 87 298 -14 21 0 0 0 chr12 131164382 131164403 -13118086 + AT_rich Low_complexity Low_complexity 1 21 0 2017 133 33 7 chr12 131164439 131164739 -13117750 - AluJo SINE Alu -3 309 2 2099 137 3 3 chr12 131164911 131165210 -13117279 + AluSx SINE Alu 1 299 -13 335 322 103 105 chr12 131165283 131165573 -13116916 - L2 LINE L2 -2 3270 2980 2076 73 31 0 chr12 131165573 131165834 -13116655 + AluSx SINE Alu 5 273 -39 335 322 103 105 chr12 131165834 131165990 -13116499 - L2 LINE L2 -292 2980 2825 1951 176 0 3 chr12 131166230 131166532 -13115957 + AluJo SINE Alu 1 301 -11 597 199 52 115 chr12 131166559 131166796 -13115693 + L1MC5 LINE L1 7255 7473 -488 2076 83 4 0 chr12 131166796 131167048 -13115441 + AluSp SINE Alu 1 253 -60 597 199 52 115 chr12 131167048 131167096 -13115393 + L1MC5 LINE L1 7473 7522 -439 2226 116 3 13 chr12 131167193 131167496 -13114993 + AluSx SINE Alu 1 300 -12 1305 124 44 8 chr12 131167496 131167745 -13114744 + L1MA4 LINE L1 6043 6300 0 253 250 31 0 chr12 131168160 131168224 -13114265 - MLT1E1 LTR MaLR -1 623 558 873 135 8 0 chr12 131168229 131168362 -13114127 + AluJo SINE Alu 1 134 -178 1611 186 19 16 chr12 131168367 131168678 -13113811 + AluJo SINE Alu 1 312 0 613 177 113 0 chr12 131168685 131168809 -13113680 - MLT1E1 LTR MaLR -70 584 447 2451 91 0 0 chr12 131169010 131169317 -13113172 + AluSg SINE Alu 1 307 -3 864 236 31 104 chr12 131169583 131169703 -13112786 + L1ME3 LINE L1 5779 5906 -256 580 199 7 44 chr12 131169703 131169839 -13112650 + FLAM_A SINE Alu 1 131 -2 864 236 31 104 chr12 131169839 131169859 -13112630 + L1ME3 LINE L1 5906 5926 -236 2269 98 0 3 chr12 131169859 131170146 -13112343 + AluSg SINE Alu 1 286 -24 864 236 31 104 chr12 131170146 131170389 -13112100 + L1ME3 LINE L1 5926 6135 -27 32 0 0 0 chr12 131170401 131170433 -13112056 + AT_rich Low_complexity Low_complexity 1 32 0 2430 50 0 53 chr12 131170723 131171043 -13111446 + AluY SINE Alu 1 303 -8 296 274 70 19 chr12 131171206 131171363 -13111126 + MER77 LTR ERV1 410 574 -31 2367 88 0 19 chr12 131171705 131172013 -13110476 + AluSx SINE Alu 1 302 -10 368 127 71 127 chr12 131172333 131172459 -13110030 - HAL1 LINE L1 -1114 1393 1275 1075 120 19 0 chr12 131172586 131172744 -13109745 + AluSg/x SINE Alu 125 285 -27 374 284 29 49 chr12 131172752 131172995 -13109494 - L2 LINE L2 -607 2707 2470 25 31 0 0 chr12 131173266 131173298 -13109191 + AT_rich Low_complexity Low_complexity 1 32 0 1946 165 75 68 chr12 131173415 131173684 -13108805 - L1MB7 LINE L1 -357 5827 5562 2036 110 16 38 chr12 131173684 131174002 -13108487 - AluSx SINE Alu -1 311 1 1946 165 75 68 chr12 131174002 131174170 -13108319 - L1MB7 LINE L1 -622 5562 5397 441 0 0 0 chr12 131174170 131174219 -13108270 + (TG)n Simple_repeat Simple_repeat 2 50 0 2299 92 0 7 chr12 131174222 131174517 -13107972 - AluSc SINE Alu -16 293 1 1946 165 75 68 chr12 131174517 131174608 -13107881 - L1MB7 LINE L1 -788 5396 5307 2647 40 3 0 chr12 131174608 131174907 -13107582 - AluY SINE Alu -11 300 1 1946 165 75 68 chr12 131174907 131174991 -13107498 - L1MB7 LINE L1 -877 5307 5197 1868 150 20 20 chr12 131174991 131175297 -13107192 - AluJo SINE Alu -6 306 1 790 264 110 39 chr12 131175301 131175763 -13106726 - L1MEc LINE L1 -4759 1502 1008 * 335 290 100 0 chr12 131175804 131175904 -13106585 + MER58B DNA MER1_type 230 339 -2 854 239 125 59 chr12 131175916 131176248 -13106241 - L1MEc LINE L1 -5118 952 643 186 71 0 0 chr12 131176248 131176276 -13106213 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 854 239 125 59 chr12 131176276 131176323 -13106166 - L1MEc LINE L1 -5427 643 601 1593 181 17 37 chr12 131176323 131176621 -13105868 + AluJo SINE Alu 1 292 -20 2686 48 0 10 chr12 131176628 131176942 -13105547 + AluY SINE Alu 1 311 0 854 239 125 59 chr12 131176942 131177097 -13105392 - L1MEc LINE L1 -5474 596 373 843 191 61 0 chr12 131177237 131177384 -13105105 + FRAM SINE Alu 4 159 -17 467 346 90 26 chr12 131178415 131178681 -13103808 - L3 LINE CR1 -860 717 435 2401 76 3 0 chr12 131178806 131179096 -13103393 - AluSx SINE Alu -21 291 1 206 281 211 26 chr12 131179910 131180024 -13102465 + L2 LINE L2 2383 2517 -797 2328 91 0 0 chr12 131182971 131183257 -13099232 - AluSg SINE Alu -8 302 17 189 213 0 0 chr12 131184678 131184725 -13097764 + (TA)n Simple_repeat Simple_repeat 1 47 0 714 202 0 16 chr12 131185530 131185659 -13096830 - FLAM_C SINE Alu -6 127 1 1972 117 28 21 chr12 131185670 131185960 -13096529 - AluSg SINE Alu -18 292 1 277 167 69 14 chr12 131186135 131186207 -13096282 + MIR SINE MIR 85 160 -102 378 0 0 0 chr12 131186482 131186524 -13095965 + (CA)n Simple_repeat Simple_repeat 1 42 0 441 240 0 33 chr12 131187041 131187162 -13095327 + MIR SINE MIR 30 146 -62 247 286 89 18 chr12 131189721 131189833 -13092656 + L2 LINE L2 1489 1608 -1706 2341 110 0 0 chr12 131189933 131190232 -13092257 - AluSx SINE Alu -13 299 1 318 299 118 36 chr12 131190295 131190516 -13091973 - L2 LINE L2 -1057 2257 2019 517 208 191 0 chr12 131190536 131190704 -13091785 + MIR SINE MIR 46 245 -17 2310 76 3 20 chr12 131191119 131191422 -13091067 - AluSq SINE Alu -14 299 2 240 235 104 82 chr12 131191426 131191474 -13091015 + L1MC5 LINE L1 7703 7748 -213 1336 195 89 31 chr12 131191474 131191823 -13090666 + MER93b LTR ERV1 5 373 0 240 235 104 82 chr12 131191823 131191957 -13090532 + L1MC5 LINE L1 7748 7889 -72 378 320 111 12 chr12 131192433 131192686 -13089803 - L1MC4a LINE L1 -1675 6133 5856 319 127 2 2 chr12 131192790 131192852 -13089637 + AluSp/q SINE Alu 239 291 -12 510 268 7 7 chr12 131192965 131193118 -13089371 + MIR SINE MIR 110 262 0 295 331 39 0 chr12 131193155 131193282 -13089207 + L1MB8 LINE L1 5521 5652 -469 2044 98 35 48 chr12 131193493 131193808 -13088681 - AluY SINE Alu 0 311 1 1807 149 30 0 chr12 131193827 131194095 -13088394 - AluJo SINE Alu -30 282 7 2115 130 92 26 chr12 131194115 131194530 -13087959 + L1MB8 LINE L1 5662 6103 -75 213 250 0 18 chr12 131196546 131196602 -13085887 - MIR SINE MIR -17 245 191 184 200 20 40 chr12 131196704 131196754 -13085735 + L2 LINE L2 3219 3267 -5 810 134 0 8 chr12 131197053 131197172 -13085317 + FLAM_C SINE Alu 1 118 -25 27 29 0 0 chr12 131197174 131197208 -13085281 + AT_rich Low_complexity Low_complexity 1 34 0 369 235 174 13 chr12 131197286 131197435 -13085054 + MER5B DNA MER1_type 5 177 -1 1318 150 18 44 chr12 131197620 131197846 -13084643 + AluJo SINE Alu 1 220 -92 1746 226 109 76 chr12 131199456 131200208 -13082281 - L1ME3A LINE L1 0 6170 5394 2184 114 7 0 chr12 131201102 131201401 -13081088 + AluSx SINE Alu 1 301 -11 2290 126 0 0 chr12 131201473 131201782 -13080707 + AluSx SINE Alu 1 309 -3 1757 142 13 33 chr12 131202757 131203059 -13079430 - AluSq SINE Alu -17 296 1 309 286 41 10 chr12 131203078 131203176 -13079313 - MIR SINE MIR -81 181 81 466 291 8 0 chr12 131203915 131204049 -13078440 - MIR SINE MIR -81 181 47 2111 125 3 7 chr12 131204142 131204446 -13078043 + AluSx SINE Alu 1 303 -9 535 248 8 0 chr12 131204491 131204616 -13077873 - MIR SINE MIR -86 176 51 306 242 33 15 chr12 131204691 131204809 -13077680 + MIR SINE MIR 79 193 -61 2436 90 3 0 chr12 131204898 131205208 -13077281 + AluSp SINE Alu 1 311 -2 1970 153 3 3 chr12 131205243 131205538 -13076951 + AluSx SINE Alu 1 295 -17 33 56 0 0 chr12 131205848 131205902 -13076587 + AT_rich Low_complexity Low_complexity 1 54 0 758 263 48 16 chr12 131256234 131256485 -13026004 + MIR SINE MIR 3 261 -1 906 275 114 33 chr12 131256734 131257243 -13025246 - MLT1H1 LTR MaLR 0 555 6 263 171 186 0 chr12 131257610 131257680 -13024809 - MIR SINE MIR -10 252 170 2204 111 0 10 chr12 131257697 131257995 -13024494 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr12 131258159 131258180 -13024309 + AT_rich Low_complexity Low_complexity 1 21 0 2020 144 3 3 chr12 131259252 131259551 -13022938 + AluJb SINE Alu 1 299 -13 2585 168 24 24 chr12 131259682 131259889 -13022600 - L1MB7 LINE L1 -17 6167 5961 234 0 0 0 chr12 131259889 131259915 -13022574 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2328 82 4 0 chr12 131259915 131260196 -13022293 - AluSp SINE Alu -31 282 1 2585 168 24 24 chr12 131260196 131260494 -13021995 - L1MB7 LINE L1 -221 5963 5661 268 200 100 12 chr12 131260496 131260576 -13021913 - MER50 LTR ERV1 -130 604 518 2204 101 19 23 chr12 131260617 131260925 -13021564 - AluSx SINE Alu -5 307 1 1729 165 34 63 chr12 131260927 131261643 -13020846 - L1MB7 LINE L1 -510 5674 4981 2142 147 10 0 chr12 131261653 131261960 -13020529 - AluSx SINE Alu -2 310 1 24 0 0 0 chr12 131261960 131261984 -13020505 + AT_rich Low_complexity Low_complexity 1 24 0 1317 95 0 34 chr12 131261984 131262163 -13020326 - AluJb SINE Alu -139 173 1 1925 174 0 3 chr12 131262163 131262461 -13020028 - AluJo SINE Alu -15 297 1 2247 106 10 3 chr12 131262735 131263038 -13019451 - AluSp SINE Alu -6 307 3 2048 110 19 32 chr12 131263040 131263348 -13019141 - AluSx SINE Alu -8 304 1 273 292 67 0 chr12 131263451 131263540 -13018949 + L2 LINE L2 3200 3294 -19 473 47 16 0 chr12 131263646 131263710 -13018779 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 791 115 9 0 chr12 131263714 131263827 -13018662 - FLAM_C SINE Alu -18 115 2 2111 116 3 10 chr12 131264234 131264537 -13017952 - AluSp SINE Alu -12 301 1 731 183 15 0 chr12 131264688 131264819 -13017670 - FLAM_A SINE Alu 0 133 1 2370 103 3 3 chr12 131264837 131265147 -13017342 - AluSx SINE Alu -2 310 1 1168 139 0 0 chr12 131265155 131265321 -13017168 - AluSg/x SINE Alu -12 300 135 549 170 211 20 chr12 131265378 131265525 -13016964 - MER4C LTR ERV1 0 465 291 2360 66 23 3 chr12 131265612 131265917 -13016572 - AluY SINE Alu 0 311 1 2077 93 3 71 chr12 131265917 131266284 -13016205 - MER4A LTR ERV1 -322 342 1 2475 71 3 0 chr12 131266664 131266958 -13015531 - AluSp SINE Alu -17 296 2 247 102 0 0 chr12 131266991 131267040 -13015449 + Alu SINE Alu 253 301 -2 236 120 0 0 chr12 131267181 131267231 -13015258 + Alu SINE Alu 253 302 -1 247 118 0 0 chr12 131267245 131267296 -13015193 + AluSp/q SINE Alu 253 303 0 774 286 24 20 chr12 131267388 131267636 -13014853 - MIR SINE MIR -5 257 9 1926 155 0 38 chr12 131267945 131268262 -13014227 + AluJo SINE Alu 1 305 -7 184 309 0 0 chr12 131268280 131268335 -13014154 + MER5A DNA MER1_type 135 189 0 203 262 71 71 chr12 131268444 131268528 -13013961 - MIR SINE MIR -90 172 89 1527 201 7 43 chr12 131268557 131268861 -13013628 - AluJb SINE Alu -19 293 1 852 162 7 15 chr12 131268861 131268997 -13013492 - AluJo SINE Alu -177 135 1 1042 182 59 115 chr12 131269168 131269558 -13012931 - MLT1A2 LTR MaLR -6 368 1 1675 151 28 17 chr12 131269608 131269899 -13012590 - AluJb SINE Alu -18 294 1 462 135 11 11 chr12 131269900 131269989 -13012500 - L1M4 LINE L1 -694 5490 5402 326 313 175 0 chr12 131270089 131270249 -13012240 + MIR SINE MIR 75 262 0 2317 90 3 0 chr12 131270268 131270558 -13011931 + AluSg SINE Alu 3 293 -17 24 67 0 0 chr12 131270561 131270606 -13011883 + AT_rich Low_complexity Low_complexity 1 45 0 458 241 135 0 chr12 131270702 131270843 -13011646 + MIR SINE MIR 103 262 0 2449 102 0 3 chr12 131270928 131271241 -13011248 + AluSx SINE Alu 1 312 0 261 0 0 0 chr12 131271242 131271271 -13011218 + (TA)n Simple_repeat Simple_repeat 1 29 0 212 208 28 0 chr12 131271305 131271377 -13011112 + (TA)n Simple_repeat Simple_repeat 1 74 0 682 251 0 12 chr12 131271545 131271712 -13010777 - FRAM SINE Alu -1 165 1 251 216 27 0 chr12 131271834 131271908 -13010581 + C-rich Low_complexity Low_complexity 3 78 0 208 232 16 65 chr12 131271921 131272106 -13010383 + (CCGCG)n Simple_repeat Simple_repeat 1 176 0 25 31 0 0 chr12 131272139 131272171 -13010318 + GC_rich Low_complexity Low_complexity 1 32 0 29 28 0 0 chr12 131272581 131272617 -13009872 + GC_rich Low_complexity Low_complexity 1 36 0 1366 152 51 70 chr12 131272722 131273037 -13009452 + AluJo SINE Alu 3 311 -1 2443 87 10 0 chr12 131273589 131273899 -13008590 - AluSq SINE Alu 0 313 1 223 281 208 10 chr12 131273941 131274037 -13008452 - L2 LINE L2 -15 3298 3184 1982 209 23 68 chr12 131274486 131274566 -13007923 + L1M4 LINE L1 2457 2539 -3607 1721 203 3 3 chr12 131274566 131274872 -13007617 + AluJb SINE Alu 1 306 -6 1982 209 23 68 chr12 131274872 131275298 -13007191 + L1M4 LINE L1 2539 2929 -3217 1836 151 0 43 chr12 131275298 131275441 -13007048 + AluSx SINE Alu 1 126 -186 2150 105 13 23 chr12 131275441 131275746 -13006743 + AluSc SINE Alu 1 302 -7 1836 151 0 43 chr12 131275746 131275907 -13006582 + AluSx SINE Alu 126 292 -20 1982 209 23 68 chr12 131275907 131276059 -13006430 + L1M4 LINE L1 2929 3086 -3060 2392 97 0 0 chr12 131276061 131276360 -13006129 + AluSq SINE Alu 1 299 -14 2183 84 52 3 chr12 131277366 131277653 -13004836 - AluSx SINE Alu -5 307 7 187 246 148 0 chr12 131277790 131277851 -13004638 + MER5B DNA MER1_type 1 70 -108 681 89 20 0 chr12 131277852 131277953 -13004536 - AluSg/x SINE Alu -16 293 191 2409 96 0 3 chr12 131278065 131278378 -13004111 + AluSx SINE Alu 1 312 0 648 198 0 0 chr12 131278399 131278515 -13003974 + FLAM_C SINE Alu 2 117 -26 25 31 0 0 chr12 131278518 131278550 -13003939 + AT_rich Low_complexity Low_complexity 1 32 0 2436 88 3 0 chr12 131278552 131278860 -13003629 + AluSx SINE Alu 1 309 -3 364 219 85 0 chr12 131279879 131279961 -13002528 + L1MC4 LINE L1 6615 6703 -1339 1235 170 123 43 chr12 131279964 131280241 -13002248 - AluSx SINE Alu -11 301 3 3145 199 33 34 chr12 131280797 131281616 -13000873 - L1M4 LINE L1 -743 5403 4586 1865 135 3 14 chr12 131282565 131282862 -12999627 - AluJo SINE Alu -18 294 1 23 54 0 0 chr12 131282896 131282933 -12999556 + GC_rich Low_complexity Low_complexity 1 37 0 22 42 0 0 chr12 131283030 131283054 -12999435 + GC_rich Low_complexity Low_complexity 1 24 0 52 0 0 0 chr12 131283442 131283494 -12998995 + AT_rich Low_complexity Low_complexity 1 52 0 313 172 0 71 chr12 131283494 131283593 -12998896 - AluY SINE Alu -15 286 195 323 60 20 0 chr12 131283593 131283643 -12998846 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1919 132 7 0 chr12 131283651 131283924 -12998565 - AluSx SINE Alu -37 275 1 231 152 0 0 chr12 131283958 131284004 -12998485 + (CCCTAA)n Simple_repeat Simple_repeat 3 48 0 198 0 0 0 chr12 131284529 131284551 -12997938 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2336 110 0 0 chr12 131284709 131285019 -12997470 - AluSg SINE Alu 0 310 1 545 129 168 30 chr12 131285020 131285121 -12997368 - FLAM_A SINE Alu -8 134 20 2118 127 13 3 chr12 131285601 131285901 -12996588 - AluSx SINE Alu -9 303 1 1533 199 43 0 chr12 131285909 131286186 -12996303 - AluJb SINE Alu -23 289 1 258 302 108 36 chr12 131286474 131286613 -12995876 + L2 LINE L2 2639 2787 -527 506 146 95 183 chr12 131286637 131286747 -12995742 - LTR16C LTR ERVL -42 449 331 2130 91 0 0 chr12 131286747 131287021 -12995468 + AluSx SINE Alu 1 274 -38 506 146 95 183 chr12 131287021 131287184 -12995305 - LTR16C LTR ERVL -160 331 200 314 123 18 0 chr12 131287215 131287272 -12995217 + CT-rich Low_complexity Low_complexity 1 58 0 634 253 23 17 chr12 131287887 131288061 -12994428 + MLT1I LTR MaLR 227 401 -8 1969 145 0 7 chr12 131288147 131288436 -12994053 + AluJo SINE Alu 5 291 -21 21 0 0 0 chr12 131288436 131288457 -12994032 + AT_rich Low_complexity Low_complexity 1 21 0 374 346 28 49 chr12 131288457 131288743 -12993746 - L2 LINE L2 -1230 2084 1805 1892 154 14 0 chr12 131288787 131289199 -12993290 + AluSx SINE Alu 1 416 0 1235 143 0 5 chr12 131289238 131289455 -12993034 - L1MB7 LINE L1 -235 5949 5734 336 276 10 20 chr12 131289525 131289623 -12992866 - MIR SINE MIR -165 97 1 771 222 111 0 chr12 131289653 131289842 -12992647 - LTR33 LTR ERVL 0 521 312 3164 172 81 3 chr12 131289983 131290604 -12991885 + LTR65 LTR ERV1 1 669 0 3512 159 38 56 chr12 131291896 131292225 -12990264 - L1MB8 LINE L1 -13 6165 5832 936 132 0 0 chr12 131292225 131292354 -12990135 - FLAM_C SINE Alu -3 130 2 3512 159 38 56 chr12 131292354 131292711 -12989778 - L1MB8 LINE L1 -346 5832 5492 2333 115 0 0 chr12 131292711 131293023 -12989466 - AluSx SINE Alu 0 312 1 3512 159 38 56 chr12 131293023 131293106 -12989383 - L1MB8 LINE L1 -686 5492 5409 353 313 175 0 chr12 131293213 131293373 -12989116 + MIR SINE MIR 75 262 0 2317 86 3 0 chr12 131293392 131293682 -12988807 + AluSg SINE Alu 3 293 -17 24 67 0 0 chr12 131293685 131293730 -12988759 + AT_rich Low_complexity Low_complexity 1 45 0 485 241 135 0 chr12 131293826 131293967 -12988522 + MIR SINE MIR 103 262 0 2418 103 0 3 chr12 131294052 131294362 -12988127 + AluSx SINE Alu 1 309 -3 297 0 0 0 chr12 131294362 131294395 -12988094 + (TA)n Simple_repeat Simple_repeat 1 33 0 259 137 27 0 chr12 131294429 131294502 -12987987 + (TA)n Simple_repeat Simple_repeat 2 76 0 1814 172 3 16 chr12 131294671 131294974 -12987515 - AluJb SINE Alu -13 299 1 2123 141 3 6 chr12 131294988 131295301 -12987188 - AluJb SINE Alu 0 312 1 1126 267 83 69 chr12 131296426 131296991 -12985498 - MLT1K LTR MaLR 0 588 16 2072 144 0 0 chr12 131297295 131297594 -12984895 - AluSq SINE Alu -14 299 1 270 283 0 0 chr12 131297602 131297662 -12984827 - L2 LINE L2 -533 2781 2722 2157 134 10 0 chr12 131298086 131298384 -12984105 - AluSx SINE Alu -11 301 1 774 275 260 8 chr12 131298550 131299019 -12983470 - L2 LINE L2 -356 2958 2372 487 188 0 51 chr12 131299039 131299156 -12983333 + AluJb SINE Alu 202 312 0 2122 109 7 4 chr12 131299157 131299433 -12983056 + AluSx SINE Alu 1 277 -35 228 35 0 0 chr12 131299433 131299462 -12983027 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 308 307 0 11 chr12 131300055 131300143 -12982346 - MIR SINE MIR -19 243 157 342 303 46 0 chr12 131300163 131300315 -12982174 + LTR67 LTR ERVL 35 193 -364 318 286 9 27 chr12 131300376 131300488 -12982001 + MER115 DNA AcHobo 2 111 -582 1339 223 66 3 chr12 131300540 131300872 -12981617 - MLT1E2 LTR MaLR -129 497 145 716 170 0 0 chr12 131300881 131300993 -12981496 - AluJb SINE Alu -199 113 2 431 144 39 67 chr12 131301012 131301158 -12981331 - MLT1D LTR MaLR -163 227 105 2119 121 28 3 chr12 131301159 131301448 -12981041 + AluSx SINE Alu 1 296 -16 1943 128 3 46 chr12 131301451 131301757 -12980732 + AluSx SINE Alu 1 293 -19 1179 130 0 0 chr12 131301757 131301918 -12980571 + AluJb SINE Alu 134 294 -18 2277 95 3 7 chr12 131301920 131302215 -12980274 + AluSx SINE Alu 1 294 -18 1024 211 8 40 chr12 131302225 131302476 -12980013 - L1MB7 LINE L1 -11 6173 5931 240 183 33 17 chr12 131302479 131302539 -12979950 + LTR67 LTR ERVL 495 555 -2 2068 130 0 0 chr12 131302574 131302850 -12979639 - AluSx SINE Alu -36 276 1 473 276 81 0 chr12 131302851 131302974 -12979515 - MIR SINE MIR -111 151 19 1601 315 72 35 chr12 131302983 131303848 -12978641 - L2 LINE L2 -630 2684 1775 2358 107 0 3 chr12 131303848 131304158 -12978331 - AluSg SINE Alu -1 309 1 1601 315 72 35 chr12 131304158 131304312 -12978177 - L2 LINE L2 -1539 1775 1628 439 302 178 11 chr12 131304365 131304640 -12977849 - L3 LINE CR1 -154 1423 1103 2191 102 26 0 chr12 131304640 131304943 -12977546 - AluSx SINE Alu -1 311 1 1499 233 9 14 chr12 131305169 131305517 -12976972 + L1M4 LINE L1 4051 4396 -1750 549 204 27 165 chr12 131305517 131305777 -12976712 + MIR SINE MIR 18 241 -21 2154 98 10 14 chr12 131305946 131306265 -12976224 - AluSx SINE Alu 0 312 1 2061 145 0 0 chr12 131306541 131306867 -12975622 - AluSx SINE Alu 0 326 1 641 202 0 0 chr12 131306898 131307027 -12975462 + MLT1D LTR MaLR 377 505 0 2410 111 30 25 chr12 131307674 131308036 -12974453 - THE1B LTR MaLR 0 364 1 755 181 0 8 chr12 131308091 131308218 -12974271 - FLAM_A SINE Alu -4 129 4 2273 120 0 0 chr12 131308979 131309279 -12973210 + AluSx SINE Alu 1 300 -12 950 175 17 34 chr12 131309431 131309598 -12972891 + FAM SINE Alu 1 166 -145 1954 102 98 0 chr12 131309598 131309873 -12972616 - AluSx SINE Alu -10 302 1 1915 123 20 7 chr12 131309964 131310264 -12972225 - L1MB5 LINE L1 0 6174 5871 419 120 67 13 chr12 131310264 131310328 -12972161 + AluSg/x SINE Alu 135 205 -105 1847 144 0 4 chr12 131310369 131310633 -12971856 - AluSx SINE Alu -49 263 1 1100 176 0 0 chr12 131310678 131310848 -12971641 - AluJb SINE Alu -9 303 134 2175 124 7 0 chr12 131310848 131311170 -12971319 - AluSq SINE Alu 0 313 1 523 264 50 27 chr12 131311173 131311393 -12971096 - L1MB5 LINE L1 -367 5803 5579 491 264 92 18 chr12 131311422 131311585 -12970904 + MER5B DNA MER1_type 4 178 0 2193 135 0 0 chr12 131311748 131312051 -12970438 + AluSx SINE Alu 1 303 -9 318 245 160 0 chr12 131312076 131312170 -12970319 + MIR SINE MIR 140 248 -14 1785 162 0 32 chr12 131312183 131312491 -12969998 + AluJo SINE Alu 1 298 -14 1267 113 0 0 chr12 131312496 131312656 -12969833 + AluSp SINE Alu 137 296 -17 462 287 163 24 chr12 131312894 131313103 -12969386 - MIR SINE MIR -21 241 4 237 33 0 0 chr12 131314145 131314175 -12968314 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 393 290 73 8 chr12 131314824 131314982 -12967507 - MIR SINE MIR -51 211 33 972 129 0 0 chr12 131315224 131315356 -12967133 + FLAM_C SINE Alu 1 132 -1 817 263 48 16 chr12 131316026 131316277 -12966212 + MIR SINE MIR 3 261 -1 809 275 114 33 chr12 131316526 131317035 -12965454 - MLT1H1 LTR MaLR 0 555 6 181 196 109 0 chr12 131317208 131317254 -12965235 - L2 LINE L2 0 3313 3263 412 240 211 49 chr12 131317402 131317489 -12965000 - MIR SINE MIR -10 252 180 2392 113 0 0 chr12 131317489 131317799 -12964690 + AluSg SINE Alu 1 310 0 412 240 211 49 chr12 131317799 131317915 -12964574 - MIR SINE MIR -82 180 16 813 95 0 32 chr12 131318316 131318442 -12964047 - L1MB7 LINE L1 -18 6166 6045 259 45 68 0 chr12 131318443 131318487 -12964002 + CT-rich Low_complexity Low_complexity 1 47 0 2264 118 3 9 chr12 131318487 131318802 -12963687 - AluSq SINE Alu 0 313 1 1971 168 24 3 chr12 131318804 131319180 -12963309 - L1MB7 LINE L1 -125 6059 5676 254 165 25 38 chr12 131319710 131319789 -12962700 + T-rich Low_complexity Low_complexity 3 80 0 1998 141 10 0 chr12 131319866 131320157 -12962332 + AluSx SINE Alu 4 297 -15 300 264 36 27 chr12 131321233 131321343 -12961146 + GA-rich Low_complexity Low_complexity 3 113 0 798 223 0 6 chr12 131321474 131321646 -12960843 + MIR SINE MIR 38 207 -55 438 20 0 0 chr12 131321680 131321731 -12960758 + (CA)n Simple_repeat Simple_repeat 2 52 0 648 161 9 0 chr12 131321762 131321874 -12960615 + MER3 DNA MER1_type 1 113 -96 832 36 18 0 chr12 131321890 131322002 -12960487 + (TAGA)n Simple_repeat Simple_repeat 3 116 0 802 120 0 0 chr12 131322002 131322110 -12960379 - FLAM_C SINE Alu -35 108 1 453 62 0 16 chr12 131322115 131322179 -12960310 + MER3 DNA MER1_type 147 209 0 335 120 0 0 chr12 131322136 131322186 -12960303 - MER3 DNA MER1_type -119 90 41 * 199 227 182 0 chr12 131322550 131322616 -12959873 + MIR3 SINE MIR 86 163 -45 1728 132 195 38 chr12 131322818 131322851 -12959638 - MSTA LTR MaLR 0 428 402 2420 93 0 3 chr12 131322851 131323162 -12959327 + AluSx SINE Alu 1 310 -2 1728 132 195 38 chr12 131323162 131323498 -12958991 - MSTA LTR MaLR -26 402 1 2024 206 83 39 chr12 131323812 131324331 -12958158 - MLT1F LTR MaLR 0 542 1 233 284 23 11 chr12 131324642 131324730 -12957759 - MIR SINE MIR -11 251 163 896 215 147 54 chr12 131324744 131325112 -12957377 - MLT1D LTR MaLR 0 505 104 2390 81 0 32 chr12 131325112 131325422 -12957067 + AluSq SINE Alu 1 300 -13 1115 109 6 6 chr12 131326155 131326311 -12956178 - AluSg/x SINE Alu -2 308 153 316 286 62 18 chr12 131326320 131326432 -12956057 - L1ME4a LINE L1 -28 6093 5977 1994 150 19 3 chr12 131326619 131326926 -12955563 - AluSx SINE Alu 0 312 1 560 278 59 0 chr12 131327113 131327282 -12955207 - L1ME4a LINE L1 -341 5780 5602 1901 163 3 10 chr12 131327324 131327624 -12954865 - AluJo SINE Alu -14 298 1 1924 134 0 21 chr12 131327981 131328264 -12954225 + AluJb SINE Alu 1 277 -35 597 182 0 123 chr12 131328265 131328435 -12954054 + MER102a DNA MER1_type 182 330 0 2110 114 10 13 chr12 131328850 131329158 -12953331 + AluSq SINE Alu 1 307 -6 848 249 58 16 chr12 131329442 131329699 -12952790 - MLT1C LTR MaLR 0 467 200 698 175 0 0 chr12 131329713 131329827 -12952662 - AluSp/q SINE Alu -6 307 194 576 169 54 82 chr12 131329829 131330013 -12952476 - MLT1C LTR MaLR -284 183 5 388 286 15 97 chr12 131330046 131330210 -12952279 + MER5A DNA MER1_type 1 146 -43 2316 62 76 0 chr12 131330210 131330499 -12951990 - AluY SINE Alu 0 311 1 388 286 15 97 chr12 131330499 131330540 -12951949 + MER5A DNA MER1_type 146 189 0 1843 167 6 10 chr12 131330688 131330999 -12951490 + AluJb SINE Alu 3 312 0 2453 86 7 0 chr12 131332274 131332575 -12949914 + AluSx SINE Alu 1 303 -9 2282 98 0 0 chr12 131332575 131332885 -12949604 + AluSx SINE Alu 1 311 0 546 326 53 40 chr12 131334246 131334621 -12947868 - L2 LINE L2 -181 3091 2722 2310 114 3 0 chr12 131334621 131334928 -12947561 - AluSq SINE Alu -5 308 1 2032 134 0 3 chr12 131334931 131335251 -12947238 - AluSp SINE Alu 0 319 1 546 326 53 40 chr12 131335251 131335321 -12947168 - L2 LINE L2 -551 2721 2641 192 77 0 0 chr12 131335431 131335457 -12947032 + (A)n Simple_repeat Simple_repeat 1 26 0 2459 172 76 14 chr12 131335630 131336119 -12946370 + LTR53 LTR ERVL 1 519 0 2536 83 3 3 chr12 131336129 131336442 -12946047 + AluSq SINE Alu 1 313 0 689 127 0 32 chr12 131336960 131337086 -12945403 - L1MB7 LINE L1 -18 6166 6045 259 45 68 0 chr12 131337087 131337131 -12945358 + CT-rich Low_complexity Low_complexity 1 47 0 2274 118 3 9 chr12 131337131 131337446 -12945043 - AluSq SINE Alu 0 313 1 1984 179 24 4 chr12 131337448 131337854 -12944635 - L1MB7 LINE L1 -125 6059 5647 1025 174 5 16 chr12 131338687 131338871 -12943618 - AluJo SINE Alu -13 299 118 641 188 127 38 chr12 131338871 131339009 -12943480 - L1M4c LINE L1 -3889 2495 2330 2260 124 0 0 chr12 131339009 131339308 -12943181 - AluSx SINE Alu -10 302 4 641 188 127 38 chr12 131339308 131339382 -12943107 - L1M4c LINE L1 -4054 2330 2264 1874 165 0 13 chr12 131339383 131339686 -12942803 - AluJo SINE Alu -13 299 1 370 187 27 0 chr12 131339686 131339761 -12942728 - L1MB7 LINE L1 -44 6140 6064 2219 124 0 3 chr12 131339768 131340067 -12942422 - AluSx SINE Alu -13 299 2 1017 178 6 6 chr12 131340113 131340282 -12942207 - AluJb SINE Alu -10 302 134 2199 120 7 0 chr12 131340282 131340604 -12941885 - AluSq SINE Alu 0 313 1 553 314 23 0 chr12 131340607 131340827 -12941662 - L1ME LINE L1 -367 5803 5579 409 282 92 18 chr12 131340856 131341019 -12941470 + MER5B DNA MER1_type 4 178 0 2212 135 0 0 chr12 131341182 131341486 -12941003 + AluSx SINE Alu 1 304 -8 299 236 169 0 chr12 131341516 131341605 -12940884 + MIR SINE MIR 145 248 -14 1796 162 0 32 chr12 131341618 131341926 -12940563 + AluJo SINE Alu 1 298 -14 1270 113 0 0 chr12 131341931 131342091 -12940398 + AluSp SINE Alu 137 296 -17 424 306 153 14 chr12 131342329 131342538 -12939951 - MIR SINE MIR -21 241 4 237 33 0 0 chr12 131343580 131343610 -12938879 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 368 285 57 9 chr12 131344272 131344417 -12938072 - MIR SINE MIR -65 143 33 925 121 0 0 chr12 131344659 131344791 -12937698 + FLAM_C SINE Alu 1 132 -1 2187 135 3 0 chr12 131345365 131345668 -12936821 + AluSx SINE Alu 1 304 -8 782 97 0 0 chr12 131345669 131345783 -12936706 + L1MB5 LINE L1 6055 6168 -6 2263 86 24 10 chr12 131345935 131346225 -12936264 + AluSx SINE Alu 3 296 -16 1498 206 10 31 chr12 131346909 131347201 -12935288 + AluJo SINE Alu 1 286 -26 1912 138 0 21 chr12 131347209 131347492 -12934997 + AluJb SINE Alu 1 277 -35 605 188 0 123 chr12 131347493 131347663 -12934826 + MER102b DNA MER1_type 193 341 0 2124 117 7 13 chr12 131348078 131348386 -12934103 + AluSx SINE Alu 1 306 -6 855 245 75 15 chr12 131348670 131348935 -12933554 - MLT1C LTR MaLR 0 467 187 669 172 0 0 chr12 131348940 131349056 -12933433 - AluSp/q SINE Alu -4 309 194 585 169 54 82 chr12 131349058 131349242 -12933247 - MLT1C LTR MaLR -284 183 5 339 296 15 84 chr12 131349275 131349436 -12933053 + MER5A DNA MER1_type 1 147 -42 2640 62 0 0 chr12 131349436 131349745 -12932744 - AluY SINE Alu -2 309 1 339 296 15 84 chr12 131349745 131349786 -12932703 + MER5A DNA MER1_type 147 189 0 1927 151 3 38 chr12 131349934 131350253 -12932236 + AluSx SINE Alu 3 310 -2 2692 42 0 0 chr12 131350618 131350924 -12931565 - AluY SINE Alu -5 306 1 1369 85 17 0 chr12 131350924 131351101 -12931388 - AluSp SINE Alu -21 292 113 2142 125 0 0 chr12 131351672 131351981 -12930508 - AluSx SINE Alu 0 309 1 724 240 136 35 chr12 131352047 131352334 -12930155 - MER74B LTR ERVL -114 508 193 572 240 16 0 chr12 131352383 131352504 -12929985 + FRAM SINE Alu 31 153 -23 2359 107 7 0 chr12 131352534 131352843 -12929646 - AluSx SINE Alu -1 311 1 932 158 13 25 chr12 131352852 131353010 -12929479 + AluJo SINE Alu 121 276 -36 180 0 0 0 chr12 131353015 131353035 -12929454 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 278 208 0 0 chr12 131353057 131353110 -12929379 - MER74B LTR ERVL -569 53 1 2069 153 0 3 chr12 131353524 131353825 -12928664 + AluJb SINE Alu 2 301 -11 1160 263 97 84 chr12 131354257 131354726 -12927763 - MLT1K LTR MaLR -23 565 87 378 0 0 0 chr12 131354726 131354768 -12927721 + (CA)n Simple_repeat Simple_repeat 2 43 0 1160 263 97 84 chr12 131354768 131354846 -12927643 - MLT1K LTR MaLR -501 87 11 2387 93 0 3 chr12 131354968 131355270 -12927219 + AluSg SINE Alu 1 301 -9 432 0 0 0 chr12 131356185 131356233 -12926256 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2058 136 4 0 chr12 131356235 131356515 -12925974 - AluSx SINE Alu -31 281 1 376 306 31 21 chr12 131356687 131356833 -12925656 + L1MC4a LINE L1 5811 5956 -206 252 324 0 0 chr12 131356854 131356922 -12925567 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 2418 96 0 3 chr12 131357109 131357412 -12925077 + AluSp SINE Alu 1 302 -11 2371 87 10 0 chr12 131357760 131358060 -12924429 + AluSp SINE Alu 2 304 -9 492 248 102 13 chr12 131358388 131358545 -12923944 - L1ME3A LINE L1 -10 6160 5990 2404 92 7 10 chr12 131358572 131358875 -12923614 + AluSx SINE Alu 1 302 -10 325 145 146 57 chr12 131358875 131358964 -12923525 - AluJo/FLAM SINE Alu -173 129 46 1359 231 142 30 chr12 131358965 131359403 -12923086 - L1ME3A LINE L1 -170 6000 5514 274 115 145 7 chr12 131359411 131359465 -12923024 - MLT1D LTR MaLR -4 501 456 1797 109 0 4 chr12 131359465 131359704 -12922785 + AluSq SINE Alu 1 238 -75 1970 126 4 0 chr12 131359704 131359973 -12922516 + AluSx SINE Alu 32 301 -11 656 252 59 8 chr12 131359986 131360224 -12922265 - L1ME3A LINE L1 -2239 3907 3658 3567 114 93 26 chr12 131360235 131360791 -12921698 - Tigger3(Golem) DNA MER2_type 0 3028 2420 2461 72 0 0 chr12 131360791 131361082 -12921407 + AluY SINE Alu 3 293 -18 3567 114 93 26 chr12 131361082 131361180 -12921309 - Tigger3(Golem) DNA MER2_type -608 2420 2330 2405 109 0 0 chr12 131361181 131361484 -12921005 + AluSx SINE Alu 1 303 -9 189 0 0 0 chr12 131361485 131361506 -12920983 + (CA)n Simple_repeat Simple_repeat 2 22 0 284 250 161 32 chr12 131361512 131361636 -12920853 - L2 LINE L2 -164 3149 3010 2069 151 0 7 chr12 131361673 131361972 -12920517 + AluSx SINE Alu 1 297 -15 213 364 74 0 chr12 131361972 131362093 -12920396 + MIR SINE MIR 132 261 -1 2018 133 10 0 chr12 131362694 131362987 -12919502 + AluSx SINE Alu 1 296 -16 267 318 116 11 chr12 131363169 131363325 -12919164 + MIR SINE MIR 25 206 -56 1063 216 126 66 chr12 131363433 131363665 -12918824 + MLT1G LTR MaLR 1 218 -337 2229 121 7 0 chr12 131363665 131363972 -12918517 + AluSx SINE Alu 1 309 -3 1063 216 126 66 chr12 131363972 131364246 -12918243 + MLT1G LTR MaLR 218 555 0 2327 94 0 0 chr12 131364481 131364792 -12917697 + AluSx SINE Alu 1 311 0 485 328 53 40 chr12 131366155 131366530 -12915959 - L2 LINE L2 -181 3091 2722 2316 114 3 0 chr12 131366530 131366837 -12915652 - AluSq SINE Alu -5 308 1 2042 134 0 3 chr12 131366840 131367160 -12915329 - AluSp SINE Alu 0 319 1 485 328 53 40 chr12 131367160 131367230 -12915259 - L2 LINE L2 -551 2721 2641 222 91 0 0 chr12 131367340 131367373 -12915116 + (A)n Simple_repeat Simple_repeat 1 33 0 2269 176 76 14 chr12 131367541 131368030 -12914459 + LTR53 LTR ERVL 1 519 0 2476 71 3 3 chr12 131368040 131368335 -12914154 + AluSq SINE Alu 1 295 -18 256 234 13 78 chr12 131369015 131369079 -12913410 + MIR SINE MIR 26 86 -176 2146 84 21 70 chr12 131369079 131369462 -12913027 + THE1B LTR MaLR 1 364 0 256 234 13 78 chr12 131369462 131369474 -12913015 + MIR SINE MIR 86 97 -165 311 328 39 47 chr12 131369520 131369776 -12912713 + L2 LINE L2 2251 2504 -810 * 475 297 153 12 chr12 131369773 131370113 -12912376 - L2 LINE L2 0 3313 2926 377 235 147 20 chr12 131370141 131370272 -12912217 + FLAM_A SINE Alu 1 144 0 2041 106 42 0 chr12 131370705 131370988 -12911501 + AluY SINE Alu 1 295 -16 818 297 7 22 chr12 131371104 131371390 -12911099 + L2 LINE L2 2772 3052 -261 2636 71 0 0 chr12 131371423 131371732 -12910757 - AluSx SINE Alu -3 309 1 307 345 21 14 chr12 131371733 131371875 -12910614 + L1M4 LINE L1 2681 2823 -3323 2090 140 3 13 chr12 131371879 131372193 -12910296 - AluJb SINE Alu -1 311 1 2220 120 0 0 chr12 131372208 131372499 -12909990 - AluSx SINE Alu -21 291 1 387 348 50 15 chr12 131372500 131372701 -12909788 - MLT1K LTR MaLR -365 223 16 265 303 34 0 chr12 131372757 131372846 -12909643 - L2 LINE L2 -16 3297 3206 2005 151 6 10 chr12 131373095 131373407 -12909082 + AluSx SINE Alu 1 311 -1 372 302 7 36 chr12 131373440 131373579 -12908910 + MIR3 SINE MIR 65 199 -9 524 266 116 0 chr12 131373703 131373876 -12908613 - Charlie8 DNA MER1_type -2141 276 84 243 0 0 0 chr12 131373879 131373906 -12908583 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1753 129 26 26 chr12 131373908 131374180 -12908309 - AluJo SINE Alu -32 280 9 1564 197 56 43 chr12 131374599 131374666 -12907823 - MLT1C LTR MaLR 0 467 402 2360 110 7 0 chr12 131374666 131374975 -12907514 + AluSx SINE Alu 1 311 -1 1564 197 56 43 chr12 131374975 131375368 -12907121 - MLT1C LTR MaLR -65 402 1 275 298 47 122 chr12 131375439 131375763 -12906726 + L2 LINE L2 2821 3109 -163 2267 99 7 0 chr12 131375763 131376055 -12906434 - AluSx SINE Alu -18 294 1 275 298 47 122 chr12 131376055 131376139 -12906350 + L2 LINE L2 3109 3198 -74 201 74 0 0 chr12 131376176 131376203 -12906286 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 8615 32 4 19 chr12 131376516 131377594 -12904895 - MER11C LTR ERVK 0 1071 10 1920 117 35 46 chr12 131378910 131379278 -12903211 - THE1B LTR MaLR 0 364 1 294 410 0 0 chr12 131379774 131379935 -12902554 + G-rich Low_complexity Low_complexity 1 161 0 1269 204 4 12 chr12 131380160 131380410 -12902079 + AluSx SINE Alu 51 298 -14 213 364 74 0 chr12 131380410 131380531 -12901958 + MIR SINE MIR 132 261 -1 1982 143 3 0 chr12 131381132 131381425 -12901064 + AluSx SINE Alu 1 294 -18 267 318 116 11 chr12 131381607 131381763 -12900726 + MIR SINE MIR 25 206 -56 621 263 78 30 chr12 131381871 131382103 -12900386 + MLT1H1 LTR MaLR 1 243 -312 2114 127 7 0 chr12 131382103 131382395 -12900094 + AluSx SINE Alu 1 294 -18 186 43 0 0 chr12 131383283 131383306 -12899183 + (CCGAG)n Simple_repeat Simple_repeat 4 26 0 24 0 0 0 chr12 131383387 131383411 -12899078 + GC_rich Low_complexity Low_complexity 1 24 0 2123 107 28 0 chr12 131384806 131385096 -12897393 - AluSq SINE Alu -15 298 1 518 231 41 14 chr12 131385122 131385269 -12897220 - MIR SINE MIR -2 260 110 350 125 156 0 chr12 131385289 131385353 -12897136 - MIR SINE MIR -113 149 76 454 244 62 107 chr12 131385571 131385754 -12896735 + MER20B DNA MER1_type 1 174 -45 2441 90 0 3 chr12 131385754 131386064 -12896425 + AluSx SINE Alu 1 309 -3 454 244 62 107 chr12 131386064 131386105 -12896384 + MER20B DNA MER1_type 174 215 -4 212 185 37 93 chr12 131386171 131386279 -12896210 - L2 LINE L2 -205 3067 2966 216 171 25 139 chr12 131386453 131386548 -12895941 - MIR SINE MIR -34 174 85 2427 97 0 3 chr12 131386684 131386994 -12895495 - AluSq SINE Alu -4 309 1 1038 200 5 0 chr12 131386994 131387184 -12895305 - AluJo SINE Alu -5 307 117 1191 177 50 35 chr12 131387467 131387623 -12894866 + MLT1A1 LTR MaLR 1 153 -221 2110 97 31 28 chr12 131387623 131387913 -12894576 + AluSc SINE Alu 1 291 -18 1191 177 50 35 chr12 131387913 131387976 -12894513 + MLT1A1 LTR MaLR 153 214 -160 1807 137 53 3 chr12 131387976 131388260 -12894229 - AluJb SINE Alu -14 298 1 1191 177 50 35 chr12 131388260 131388352 -12894137 + MLT1A1 LTR MaLR 214 353 -21 2374 79 10 3 chr12 131388536 131388828 -12893661 - AluSg1 SINE Alu -15 294 1 478 267 20 27 chr12 131388858 131389004 -12893485 - MER5B DNA MER1_type -29 149 5 300 217 130 29 chr12 131389042 131389180 -12893309 - L2 LINE L2 -1 3312 3161 2421 82 0 3 chr12 131390015 131390308 -12892181 + AluSg SINE Alu 1 292 -18 219 231 0 19 chr12 131390333 131390385 -12892104 + (TG)n Simple_repeat Simple_repeat 2 52 0 294 29 0 0 chr12 131390385 131390420 -12892069 + (CA)n Simple_repeat Simple_repeat 2 36 0 1900 101 51 0 chr12 131390507 131390764 -12891725 - AluSx SINE Alu -12 300 31 2083 135 0 10 chr12 131391948 131392245 -12890244 + AluSx SINE Alu 1 294 -18 1794 167 0 7 chr12 131392377 131392664 -12889825 - AluJo SINE Alu -27 285 1 206 290 116 0 chr12 131393011 131393080 -12889409 - MIR SINE MIR -75 187 111 2266 123 0 0 chr12 131393157 131393458 -12889031 - AluSx SINE Alu -11 301 1 1593 188 3 43 chr12 131395059 131395384 -12887105 - AluJo SINE Alu 0 312 1 2031 140 3 3 chr12 131395863 131396148 -12886341 + AluJo SINE Alu 1 285 -27 381 286 0 0 chr12 131396266 131396357 -12886132 + MIR SINE MIR 71 161 -101 1043 148 0 0 chr12 131396358 131396507 -12885982 + AluJb SINE Alu 134 282 -30 288 53 0 0 chr12 131396507 131396545 -12885944 + (CAAAC)n Simple_repeat Simple_repeat 3 40 0 235 241 89 25 chr12 131396545 131396624 -12885865 + MIR SINE MIR 154 237 -25 1051 293 70 70 chr12 131396903 131397251 -12885238 - MLT1K LTR MaLR -6 582 235 1936 141 3 14 chr12 131397251 131397542 -12884947 - AluJb SINE Alu -24 288 1 1051 293 70 70 chr12 131397542 131397557 -12884932 - MLT1K LTR MaLR -353 235 221 2180 127 0 0 chr12 131397557 131397848 -12884641 - AluSx SINE Alu -21 291 1 1051 293 70 70 chr12 131397848 131398050 -12884439 - MLT1K LTR MaLR -366 222 16 265 303 34 0 chr12 131398106 131398195 -12884294 - L2 LINE L2 -16 3297 3206 2221 122 6 6 chr12 131398444 131398755 -12883734 + AluSx SINE Alu 1 311 -1 372 302 7 36 chr12 131398788 131398927 -12883562 + MIR3 SINE MIR 65 199 -9 524 266 116 0 chr12 131399051 131399224 -12883265 - Charlie8 DNA MER1_type -2152 265 73 243 0 0 0 chr12 131399227 131399254 -12883235 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1753 129 26 26 chr12 131399256 131399528 -12882961 - AluJo SINE Alu -32 280 9 1582 199 57 37 chr12 131399947 131400014 -12882475 - MLT1C LTR MaLR 0 467 403 2342 111 7 0 chr12 131400014 131400321 -12882168 + AluSx SINE Alu 1 309 -3 1582 199 57 37 chr12 131400321 131400711 -12881778 - MLT1C LTR MaLR -64 403 1 275 298 47 122 chr12 131400782 131401106 -12881383 + L2 LINE L2 2821 3109 -163 2240 106 7 0 chr12 131401106 131401398 -12881091 - AluSx SINE Alu -18 294 1 275 298 47 122 chr12 131401398 131401482 -12881007 + L2 LINE L2 3109 3198 -74 201 74 0 0 chr12 131401519 131401546 -12880943 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 8639 30 4 19 chr12 131401859 131402937 -12879552 - MER11C LTR ERVK 0 1071 10 1920 117 35 46 chr12 131404252 131404620 -12877869 - THE1B LTR MaLR 0 364 1 2171 135 0 0 chr12 131405076 131405379 -12877110 - AluSx SINE Alu -9 303 1 1997 158 27 3 chr12 131405379 131405745 -12876744 - L1MB4 LINE L1 -230 5950 5576 277 143 71 0 chr12 131405751 131405807 -12876682 - L1MB4 LINE L1 -2375 5433 5374 1579 115 0 0 chr12 131406169 131406377 -12876112 - AluSc SINE Alu -21 288 81 2205 108 3 23 chr12 131406573 131406880 -12875609 - AluSx SINE Alu -11 301 1 2355 118 0 0 chr12 131406880 131407183 -12875306 - AluSg SINE Alu -6 304 1 1790 155 22 36 chr12 131407184 131407545 -12874944 - L1MB5 LINE L1 0 6174 5819 2286 101 7 26 chr12 131407553 131407861 -12874628 - AluSx SINE Alu -10 302 1 385 250 45 62 chr12 131407874 131408050 -12874439 + Charlie8 DNA MER1_type 79 251 -2166 1083 113 0 38 chr12 131408114 131408273 -12874216 + FRAM SINE Alu 1 40 0 546 190 143 113 chr12 131409082 131409382 -12873107 - LTR16C LTR ERVL -6 485 177 892 275 70 54 chr12 131409606 131410121 -12872368 + L2 LINE L2 2772 3313 0 1965 135 3 32 chr12 131410170 131410481 -12872008 - AluSx SINE Alu -10 302 1 1137 180 124 0 chr12 131410637 131410920 -12871569 - L1ME2 LINE L1 -266 5898 5581 1179 204 19 0 chr12 131410921 131411137 -12871352 + AluJo SINE Alu 1 220 -92 327 221 94 0 chr12 131411266 131411393 -12871096 - L1ME2 LINE L1 -986 5160 5022 563 245 122 0 chr12 131411480 131411676 -12870813 + L1ME3A LINE L1 5896 6115 -55 2025 130 24 0 chr12 131411676 131411969 -12870520 - AluSq SINE Alu -13 300 1 533 270 125 69 chr12 131412408 131412581 -12869908 - MER102b DNA MER1_type -1091 337 175 2196 121 7 0 chr12 131412581 131412878 -12869611 - AluSx SINE Alu -12 300 2 533 270 125 69 chr12 131412878 131412905 -12869584 - MER102b DNA MER1_type -1253 175 151 2078 134 3 3 chr12 131412905 131413203 -12869286 - AluSx SINE Alu -14 298 1 533 270 125 69 chr12 131413203 131413320 -12869169 - MER102b DNA MER1_type -1277 151 1 183 237 105 53 chr12 131413588 131413664 -12868825 - MIR SINE MIR -114 148 69 268 254 16 103 chr12 131413750 131413876 -12868613 + MIR SINE MIR 29 143 -119 180 194 0 0 chr12 131413876 131413907 -12868582 + MIR SINE MIR 114 144 -64 1174 139 0 0 chr12 131414381 131414546 -12867943 + AluSg/x SINE Alu 136 300 -10 1021 286 8 81 chr12 131414591 131414838 -12867651 + L1MD2 LINE L1 5570 5768 -591 387 0 0 0 chr12 131414838 131414881 -12867608 + (TA)n Simple_repeat Simple_repeat 2 44 0 1021 286 8 81 chr12 131414881 131415105 -12867384 + L1MD2 LINE L1 5768 6007 -352 * 1550 196 8 59 chr12 131414882 131415171 -12867318 + L1MB7 LINE L1 5788 6055 -129 2351 100 0 3 chr12 131415171 131415471 -12867018 + AluSx SINE Alu 1 299 -13 1550 196 8 59 chr12 131415471 131415553 -12866936 + L1MB7 LINE L1 6055 6140 -44 2209 118 0 13 chr12 131415553 131415867 -12866622 + AluSg SINE Alu 1 310 0 270 0 0 0 chr12 131415911 131415941 -12866548 + (A)n Simple_repeat Simple_repeat 1 30 0 552 159 0 0 chr12 131416179 131416267 -12866222 + AluSg1 SINE Alu 2 89 -220 1112 177 18 102 chr12 131416370 131416587 -12865902 + L1MB7 LINE L1 5857 6091 -93 2351 100 0 3 chr12 131416587 131416887 -12865602 + AluSx SINE Alu 1 299 -13 1112 177 18 102 chr12 131416887 131416969 -12865520 + L1MB7 LINE L1 6091 6128 -56 2030 121 0 40 chr12 131416969 131417292 -12865197 + AluSg SINE Alu 1 310 0 1112 177 18 102 chr12 131417292 131417325 -12865164 + L1MB7 LINE L1 6128 6162 -22 270 0 0 0 chr12 131417328 131417358 -12865131 + (A)n Simple_repeat Simple_repeat 1 30 0 2379 75 10 3 chr12 131417589 131417881 -12864608 + AluSg1 SINE Alu 1 294 -15 1191 177 50 35 chr12 131418065 131418157 -12864332 - MLT1A1 LTR MaLR -21 353 264 1807 137 53 3 chr12 131418157 131418441 -12864048 + AluJb SINE Alu 1 298 -14 1191 177 50 35 chr12 131418441 131418504 -12863985 - MLT1A1 LTR MaLR -110 264 203 2125 93 31 28 chr12 131418504 131418794 -12863695 - AluSc SINE Alu -18 291 1 1191 177 50 35 chr12 131418794 131418950 -12863539 - MLT1A1 LTR MaLR -171 203 1 1874 154 10 22 chr12 131419387 131419560 -12862929 - AluJb SINE Alu -4 308 139 2383 71 0 7 chr12 131419560 131419895 -12862594 - AluY SINE Alu 0 311 1 1874 154 10 22 chr12 131419895 131420033 -12862456 - AluJb SINE Alu -173 139 1 222 227 18 22 chr12 131420056 131420131 -12862358 - MIR SINE MIR -65 143 92 233 261 0 0 chr12 131420792 131420838 -12861651 - MIR SINE MIR -110 152 107 482 157 12 0 chr12 131420897 131420980 -12861509 - MER58A DNA MER1_type 0 129 46 933 142 0 0 chr12 131420981 131421108 -12861381 + AluSq SINE Alu 3 129 -184 180 0 0 0 chr12 131421108 131421128 -12861361 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 278 224 0 0 chr12 131421128 131421177 -12861312 - MER58A DNA MER1_type -175 49 1 226 108 0 0 chr12 131421185 131421222 -12861267 - Charlie1b DNA MER1_type 0 523 487 1400 87 0 16 chr12 131421225 131421410 -12861079 + AluSq SINE Alu 114 295 -18 368 198 54 0 chr12 131421413 131421524 -12860965 - Charlie1b DNA MER1_type -50 473 357 1941 149 3 3 chr12 131421524 131421813 -12860676 + AluJb SINE Alu 1 289 -23 1781 121 0 0 chr12 131421913 131422153 -12860336 - AluY SINE Alu -71 240 1 999 241 106 10 chr12 131422154 131422457 -12860032 - Charlie1b DNA MER1_type -191 332 1 239 285 114 25 chr12 131422501 131422659 -12859830 - L2 LINE L2 -177 3095 2924 233 315 65 46 chr12 131423155 131423263 -12859226 - L2 LINE L2 -1 3271 3162 2260 103 7 7 chr12 131423412 131423713 -12858776 - AluSx SINE Alu -11 301 1 193 198 88 66 chr12 131424274 131424293 -12858196 - L2 LINE L2 0 3313 3296 1569 178 4 4 chr12 131424293 131424551 -12857938 - AluJb SINE Alu -18 294 37 193 198 88 66 chr12 131424551 131424622 -12857867 - L2 LINE L2 -17 3296 3221 391 220 37 0 chr12 131424718 131424827 -12857662 - MER113 DNA MER1_type? -402 119 7 284 227 18 64 chr12 131425201 131425249 -12857240 - L2 LINE L2 -493 2821 2772 2221 108 10 0 chr12 131425249 131425544 -12856945 + AluSx SINE Alu 4 301 -11 284 227 18 64 chr12 131425544 131425605 -12856884 - L2 LINE L2 -542 2772 2717 1075 126 6 0 chr12 131425892 131426051 -12856438 + FRAM SINE Alu 2 161 -5 2269 133 3 0 chr12 131426063 131426371 -12856118 + AluSx SINE Alu 1 309 -3 2258 90 0 4 chr12 131426858 131427136 -12855353 + AluSx SINE Alu 21 297 -15 719 110 0 0 chr12 131427140 131427249 -12855240 - L1MA2 LINE L1 0 6304 6196 3272 133 12 24 chr12 131427418 131427995 -12854494 + L1MB5 LINE L1 5596 6165 -9 2135 116 7 7 chr12 131428000 131428292 -12854197 - AluSx SINE Alu -20 292 1 288 65 0 43 chr12 131428956 131429002 -12853487 - MLT2A1 LTR ERVL -11 442 399 205 178 0 0 chr12 131429010 131429055 -12853434 + (TA)n Simple_repeat Simple_repeat 1 45 0 2414 96 70 23 chr12 131429055 131429441 -12853048 - MLT2A1 LTR ERVL -40 404 1 184 234 52 26 chr12 131429572 131429649 -12852840 - MIR SINE MIR -16 246 168 * 304 180 67 56 chr12 131429641 131429730 -12852759 + MIR SINE MIR 85 174 -88 2173 104 17 0 chr12 131429804 131430093 -12852396 - AluSx SINE Alu -18 294 1 983 256 85 7 chr12 131431043 131431492 -12850997 - MLT1K LTR MaLR -15 573 69 2264 116 0 3 chr12 131431712 131432015 -12850474 + AluSq SINE Alu 1 302 -11 398 345 6 12 chr12 131432189 131432354 -12850135 - MER117 DNA MER1_type -28 169 6 2268 110 3 22 chr12 131432423 131432741 -12849748 - AluSx SINE Alu 0 312 1 352 390 15 10 chr12 131432891 131433096 -12849393 - L1MC4 LINE L1 -1 8041 7836 231 308 154 24 chr12 131433295 131433464 -12849025 + MIR SINE MIR 14 204 -58 * 1072 259 91 10 chr12 131433463 131433846 -12848643 - L2 LINE L2 0 3313 2900 257 286 19 48 chr12 131436886 131436991 -12845498 - L2 LINE L2 0 3272 3171 2297 116 0 0 chr12 131437713 131438014 -12844475 - AluSq SINE Alu -9 304 4 1753 196 124 2 chr12 131438034 131438479 -12844010 - L1MB5 LINE L1 0 6174 5676 2230 163 78 11 chr12 131440440 131440913 -12841576 - L1MB7 LINE L1 0 6184 5680 2191 90 10 0 chr12 131440950 131441239 -12841250 + AluSq SINE Alu 1 292 -21 2552 42 0 0 chr12 131441239 131441546 -12840943 + AluY SINE Alu 1 307 -4 2124 112 0 34 chr12 131441905 131442228 -12840261 - AluSx SINE Alu 0 312 1 284 254 0 0 chr12 131446753 131446812 -12835677 + MER5A DNA MER1_type 14 72 -117 1859 142 3 38 chr12 131446815 131447131 -12835358 + AluJo SINE Alu 1 305 -7 202 291 0 0 chr12 131447149 131447204 -12835285 + MER5A DNA MER1_type 135 189 0 211 262 71 71 chr12 131447313 131447397 -12835092 - MIR SINE MIR -90 172 89 1423 201 7 43 chr12 131447426 131447730 -12834759 - AluJb SINE Alu -19 293 1 841 163 7 15 chr12 131447730 131447865 -12834624 - AluJo SINE Alu -177 135 2 1065 190 54 110 chr12 131448037 131448427 -12834062 - MLT1A2 LTR MaLR -6 368 1 1563 172 26 0 chr12 131448477 131448744 -12833745 - AluJb SINE Alu -18 294 21 2223 101 3 0 chr12 131448990 131449288 -12833201 + AluSg SINE Alu 1 299 -11 827 159 8 8 chr12 131449575 131449707 -12832782 + AluJb SINE Alu 136 267 -45 2196 109 0 13 chr12 131449718 131450029 -12832460 + AluSx SINE Alu 1 307 -5 1709 93 0 8 chr12 131452258 131452495 -12829994 - AluSc SINE Alu -9 300 66 22 0 0 0 chr12 131452500 131452522 -12829967 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr12 131452554 131452575 -12829914 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1714 206 89 2 chr12 131452587 131452990 -12829499 + L1MB7 LINE L1 5747 6184 0 2035 115 7 10 chr12 131452995 131453300 -12829189 + AluSx SINE Alu 1 304 -8 309 236 56 0 chr12 131453303 131453375 -12829114 + L1MC3 LINE L1 6571 6646 -1139 1794 112 83 11 chr12 131453890 131454168 -12828321 - AluSx SINE Alu -14 298 1 1492 232 85 28 chr12 131454260 131454695 -12827794 + MLT1C LTR MaLR 1 460 -7 227 207 85 0 chr12 131455817 131455899 -12826590 + L1MC4 LINE L1 6615 6703 -1339 1548 109 123 43 chr12 131455900 131456176 -12826313 - AluSx SINE Alu -14 298 1 1435 194 10 31 chr12 131456184 131456477 -12826012 - AluJo SINE Alu -25 287 1 2007 100 24 14 chr12 131457161 131457452 -12825037 - AluSx SINE Alu -16 296 3 2192 164 79 11 chr12 131459579 131460047 -12822442 - L1MB7 LINE L1 0 6184 5685 2353 84 0 0 chr12 131460090 131460398 -12822091 + AluY SINE Alu 1 308 -3 1069 186 14 5 chr12 131460401 131460621 -12821868 + L1MB5 LINE L1 5666 5887 -287 2252 85 0 3 chr12 131461020 131461313 -12821176 + AluSg SINE Alu 1 292 -18 219 231 0 19 chr12 131461338 131461390 -12821099 + (TG)n Simple_repeat Simple_repeat 2 52 0 279 54 0 0 chr12 131461390 131461427 -12821062 + (CA)n Simple_repeat Simple_repeat 2 38 0 2118 114 3 3 chr12 131461514 131461813 -12820676 - AluSx SINE Alu -11 301 3 22 0 0 0 chr12 131462227 131462249 -12820240 + AT_rich Low_complexity Low_complexity 1 22 0 253 225 42 50 chr12 131462464 131462584 -12819905 - L1ME3A LINE L1 -195 5975 5857 2353 69 3 3 chr12 131462879 131463185 -12819304 - AluY SINE Alu -5 306 1 2092 108 0 14 chr12 131463187 131463484 -12819005 - AluSx SINE Alu -19 293 1 287 212 0 0 chr12 131467768 131467834 -12814655 + AluJ/monomer SINE Alu 235 300 -2 2244 106 3 3 chr12 131468195 131468506 -12813983 + AluSx SINE Alu 1 311 -1 490 172 147 98 chr12 131469132 131469214 -12813275 + L1MB5 LINE L1 5657 5734 -440 2277 68 10 3 chr12 131469214 131469508 -12812981 + AluSg SINE Alu 1 296 -14 490 172 147 98 chr12 131469508 131469588 -12812901 + L1MB5 LINE L1 5734 5827 -347 1975 136 0 13 chr12 131469591 131469893 -12812596 + AluSg SINE Alu 3 300 -10 227 280 40 27 chr12 131470087 131470162 -12812327 + MIR3 SINE MIR 102 177 -31 2041 131 3 13 chr12 131470166 131470480 -12812009 - AluJb SINE Alu -1 311 1 475 378 78 17 chr12 131470481 131470627 -12811862 + L1M4 LINE L1 2681 2817 -3329 2205 111 0 3 chr12 131470627 131470934 -12811555 - AluSx SINE Alu -1 311 6 475 378 78 17 chr12 131470934 131471083 -12811406 + L1M4 LINE L1 2817 2994 -3152 810 106 0 0 chr12 131471083 131471233 -12811256 - AluY SINE Alu 0 346 197 381 58 0 0 chr12 131471233 131471285 -12811204 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1810 139 7 0 chr12 131471285 131471566 -12810923 - AluSx SINE Alu -29 283 1 231 152 0 0 chr12 131471600 131471646 -12810843 + (CCCTAA)n Simple_repeat Simple_repeat 3 48 0 198 0 0 0 chr12 131472171 131472193 -12810296 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2219 107 0 0 chr12 131472351 131472661 -12809828 - AluSg SINE Alu 0 310 1 548 129 168 30 chr12 131472662 131472763 -12809726 - FLAM_A SINE Alu -8 134 20 2093 119 7 3 chr12 131473243 131473545 -12808944 - AluSx SINE Alu -9 303 1 1837 132 32 4 chr12 131473553 131473834 -12808655 - AluJo SINE Alu -23 289 1 568 185 28 0 chr12 131474150 131474258 -12808231 - MER81 DNA DNA -1 113 3 2115 132 0 0 chr12 131474334 131474644 -12807845 - AluSx SINE Alu -2 310 1 2060 160 19 3 chr12 131474644 131475013 -12807476 - L1MB4 LINE L1 -230 5950 5576 278 143 71 0 chr12 131475019 131475075 -12807414 - L1MB4 LINE L1 -2375 5433 5374 1460 120 0 0 chr12 131475435 131475643 -12806846 - AluSc SINE Alu -21 288 81 701 229 6 13 chr12 131476740 131476897 -12805592 + AluSg/x SINE Alu 108 263 -49 453 141 59 12 chr12 131476938 131477002 -12805487 - AluSc SINE Alu -104 205 135 1968 123 20 7 chr12 131477002 131477302 -12805187 + L1MB5 LINE L1 5871 6174 0 453 141 59 12 chr12 131477302 131477322 -12805167 - AluSc SINE Alu -174 135 117 1690 98 106 0 chr12 131477392 131477690 -12804799 + AluSx SINE Alu 1 325 0 2304 86 0 3 chr12 131477702 131478003 -12804486 + AluSx SINE Alu 1 300 -12 378 202 12 12 chr12 131478034 131478118 -12804371 - MER33 DNA MER1_type -240 84 1 183 237 0 0 chr12 131478119 131478157 -12804332 + MIR3 SINE MIR 163 200 -8 2058 113 10 10 chr12 131478441 131478751 -12803738 - AluSx SINE Alu 0 312 3 726 286 24 5 chr12 131478791 131478997 -12803492 + MLT1K LTR MaLR 7 216 -372 260 59 0 0 chr12 131479178 131479212 -12803277 - Alu SINE Alu -29 271 238 592 102 23 0 chr12 131479212 131479300 -12803189 - AluSg/x SINE Alu -44 266 177 1977 129 3 7 chr12 131479700 131480003 -12802486 + AluSq SINE Alu 1 302 -11 2274 106 3 0 chr12 131480364 131480675 -12801814 + AluSx SINE Alu 1 312 0 186 71 0 0 chr12 131480687 131480715 -12801774 + (CAA)n Simple_repeat Simple_repeat 2 29 0 490 172 147 98 chr12 131481303 131481385 -12801104 + L1MB5 LINE L1 5657 5734 -440 2277 68 10 3 chr12 131481385 131481679 -12800810 + AluSg SINE Alu 1 296 -14 490 172 147 98 chr12 131481679 131481759 -12800730 + L1MB5 LINE L1 5734 5827 -347 2193 99 3 0 chr12 131481762 131482056 -12800433 + AluSp SINE Alu 3 297 -16 2081 139 87 69 chr12 131482436 131482803 -12799686 + MER4A LTR ERV1 1 239 -226 2288 50 26 3 chr12 131482803 131483105 -12799384 + AluY SINE Alu 1 309 -2 2081 139 87 69 chr12 131483105 131483337 -12799152 + MER4A LTR ERV1 239 465 0 1103 139 0 0 chr12 131483394 131483560 -12798929 + AluSg/x SINE Alu 135 300 -12 2243 103 3 3 chr12 131483568 131483879 -12798610 + AluSx SINE Alu 1 311 -1 780 183 15 0 chr12 131483897 131484028 -12798461 + FLAM_A SINE Alu 1 133 0 2209 89 3 9 chr12 131484182 131484497 -12797992 + AluSp SINE Alu 1 313 0 345 315 139 14 chr12 131484619 131484835 -12797654 + MIR SINE MIR 20 262 0 519 302 25 0 chr12 131484912 131485071 -12797418 + MIR SINE MIR 60 222 -40 2375 86 0 0 chr12 131485203 131485507 -12796982 + AluSg SINE Alu 1 304 -6 620 244 65 24 chr12 131485867 131485956 -12796533 + MER45A DNA AcHobo 4 88 -1493 2077 118 3 3 chr12 131485956 131486260 -12796229 - AluSx SINE Alu -8 304 1 620 244 65 24 chr12 131486260 131486338 -12796151 + MER45A DNA AcHobo 88 178 0 2089 101 0 0 chr12 131486565 131486843 -12795646 - AluSq SINE Alu -15 298 21 1588 111 18 0 chr12 131487169 131487395 -12795094 + AluSx SINE Alu 1 230 -82 311 259 35 0 chr12 131487526 131487611 -12794878 + AluSg/x SINE Alu 202 289 -11 3488 139 12 24 chr12 131487616 131488193 -12794296 - L1MB5 LINE L1 -9 6165 5596 776 110 0 0 chr12 131488361 131488470 -12794019 + L1MA2 LINE L1 6196 6304 0 2264 86 0 4 chr12 131488474 131488752 -12793737 - AluSx SINE Alu -15 297 21 2187 146 3 0 chr12 131489242 131489551 -12792938 - AluSx SINE Alu -2 310 1 2288 87 7 0 chr12 131489937 131490223 -12792266 - AluSc SINE Alu -21 288 1 995 140 0 0 chr12 131490642 131490785 -12791704 - FLAM_C SINE Alu 0 143 1 556 306 27 6 chr12 131491394 131491577 -12790912 + MIR SINE MIR 76 262 0 2476 83 3 0 chr12 131491588 131491890 -12790599 - AluSq SINE Alu -10 303 1 1275 174 24 36 chr12 131491949 131492202 -12790287 - MIR SINE MIR -10 252 3 1480 98 26 51 chr12 131492204 131492438 -12790051 - MER30 DNA MER1_type -1 229 2 938 121 57 0 chr12 131492590 131492730 -12789759 + AluJb SINE Alu 1 148 -164 998 121 21 0 chr12 131492846 131492986 -12789503 + AluJb SINE Alu 162 304 -8 748 254 62 14 chr12 131493000 131493209 -12789280 + MIR SINE MIR 7 225 -37 268 315 87 0 chr12 131493219 131493311 -12789178 - MER63 DNA MER1_type -326 736 11 1674 109 13 13 chr12 131493408 131493647 -12788842 + AluSq SINE Alu 66 304 -9 1018 164 73 60 chr12 131494181 131494216 -12788273 - MER33 DNA MER1_type -2263 322 289 1952 143 0 7 chr12 131494216 131494503 -12787986 - AluJb SINE Alu -19 293 9 1018 164 73 60 chr12 131494503 131494568 -12787921 - MER33 DNA MER1_type -2296 289 226 1402 167 46 100 chr12 131494568 131494897 -12787592 + AluJb SINE Alu 1 311 -1 1018 164 73 60 chr12 131494897 131494987 -12787502 - MER33 DNA MER1_type -2359 226 139 1864 165 10 3 chr12 131494987 131495278 -12787211 - AluJo SINE Alu -19 293 1 1018 164 73 60 chr12 131495278 131495402 -12787087 - MER33 DNA MER1_type -2446 139 2 276 30 0 0 chr12 131495597 131495630 -12786859 + (TA)n Simple_repeat Simple_repeat 1 33 0 1885 129 43 4 chr12 131495745 131496025 -12786464 + AluJo SINE Alu 1 291 -21 675 169 113 89 chr12 131496034 131496206 -12786283 - MER33 DNA MER1_type -2276 309 142 2274 71 0 3 chr12 131496206 131496531 -12785958 + AluY SINE Alu 1 324 0 675 169 113 89 chr12 131496531 131496543 -12785946 - MER33 DNA MER1_type -2443 142 132 2437 86 0 3 chr12 131496543 131496844 -12785645 + AluSx SINE Alu 1 300 -12 675 169 113 89 chr12 131496844 131496959 -12785530 - MER33 DNA MER1_type -2453 132 1 189 237 0 0 chr12 131496960 131496998 -12785491 + MIR3 SINE MIR 163 200 -8 2188 113 10 10 chr12 131497282 131497592 -12784897 - AluSx SINE Alu 0 312 3 656 286 24 5 chr12 131497632 131497838 -12784651 + MLT1K LTR MaLR 7 216 -372 251 59 0 0 chr12 131498019 131498053 -12784436 - Alu SINE Alu -29 272 239 598 102 23 0 chr12 131498053 131498141 -12784348 - AluSg/x SINE Alu -44 268 179 2098 129 3 7 chr12 131498541 131498844 -12783645 + AluSq SINE Alu 1 302 -11 2404 106 3 0 chr12 131499205 131499516 -12782973 + AluSx SINE Alu 1 312 0 186 71 0 0 chr12 131499528 131499556 -12782933 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2024 167 68 45 chr12 131500148 131500226 -12782263 + L1MB5 LINE L1 5661 5736 -438 2371 71 10 3 chr12 131500226 131500520 -12781969 + AluSg SINE Alu 1 296 -14 2024 167 68 45 chr12 131500520 131500603 -12781886 + L1MB5 LINE L1 5736 5816 -358 1954 134 38 0 chr12 131500603 131500719 -12781770 + AluSx SINE Alu 3 113 -199 405 39 0 0 chr12 131500719 131500770 -12781719 + (CA)n Simple_repeat Simple_repeat 2 52 0 1954 134 38 0 chr12 131500770 131500945 -12781544 + AluSx SINE Alu 113 305 -7 2024 167 68 45 chr12 131500945 131501249 -12781240 + L1MB5 LINE L1 5816 6138 -36 2192 143 0 0 chr12 131501249 131501557 -12780932 - AluSx SINE Alu -4 308 1 359 84 61 38 chr12 131502013 131502144 -12780345 + (TCTA)n Simple_repeat Simple_repeat 3 136 0 202 114 23 23 chr12 131502150 131502194 -12780295 + T-rich Low_complexity Low_complexity 3 46 0 861 137 8 15 chr12 131502216 131502229 -12780260 - FLAM_C SINE Alu -171 131 119 515 56 14 0 chr12 131502229 131502300 -12780189 + (TCCA)n Simple_repeat Simple_repeat 1 72 0 861 137 8 15 chr12 131502300 131502417 -12780072 - FLAM_C SINE Alu -183 119 2 905 219 0 0 chr12 131502824 131502988 -12779501 - FRAM SINE Alu -12 164 1 2288 87 7 0 chr12 131503375 131503661 -12778828 - AluSc SINE Alu -21 288 1 995 140 0 0 chr12 131504080 131504223 -12778266 - FLAM_C SINE Alu 0 143 1 556 306 27 6 chr12 131504832 131505015 -12777474 + MIR SINE MIR 76 262 0 2476 83 3 0 chr12 131505026 131505328 -12777161 - AluSq SINE Alu -10 303 1 1275 174 24 36 chr12 131505387 131505640 -12776849 - MIR SINE MIR -10 252 3 1507 102 17 51 chr12 131505642 131505878 -12776611 - MER30 DNA MER1_type -1 229 2 938 121 57 0 chr12 131506030 131506170 -12776319 + AluJb SINE Alu 1 148 -164 905 131 23 0 chr12 131506286 131506416 -12776073 + AluJb SINE Alu 162 294 -18 725 251 62 24 chr12 131506430 131506641 -12775848 + MIR SINE MIR 7 225 -37 268 315 87 0 chr12 131506651 131506743 -12775746 - MER63 DNA MER1_type -326 736 11 1658 113 13 13 chr12 131506840 131507079 -12775410 + AluSq SINE Alu 66 304 -9 249 86 0 0 chr12 131507613 131507648 -12774841 - Charlie5 DNA MER1_type -29 2583 2549 1294 143 0 5 chr12 131507648 131507837 -12774652 - AluSg/x SINE Alu -19 293 106 1417 108 0 0 chr12 131508194 131508380 -12774109 + AluSg/x SINE Alu 126 311 -1 2314 110 0 7 chr12 131509117 131509426 -12773063 - AluSg SINE Alu -3 307 1 723 233 78 10 chr12 131509595 131509788 -12772701 - MER3 DNA MER1_type -2 207 2 1476 180 59 21 chr12 131509868 131510190 -12772299 + AluJb SINE Alu 11 343 0 580 195 30 6 chr12 131510264 131510433 -12772056 + GA-rich Low_complexity Low_complexity 2 174 0 229 345 35 0 chr12 131511227 131511314 -12771175 - L2 LINE L2 -2127 1187 1098 497 325 22 1 chr12 131511324 131511531 -12770958 - MLT1L LTR MaLR -3 612 375 690 324 156 14 chr12 131511750 131512385 -12770104 - L2 LINE L2 -2280 1034 310 373 278 145 57 chr12 131512575 131512620 -12769869 + MLT1L LTR MaLR 1 41 -574 1661 117 25 42 chr12 131512620 131512949 -12769540 + AluJo SINE Alu 5 328 0 373 278 145 57 chr12 131512949 131513150 -12769339 + MLT1L LTR MaLR 41 270 -345 1517 164 68 4 chr12 131513155 131513418 -12769071 + AluJo SINE Alu 1 280 -32 411 186 0 0 chr12 131513418 131513515 -12768974 + GA-rich Low_complexity Low_complexity 3 99 0 449 204 282 0 chr12 131513562 131513652 -12768837 + MLT1L LTR MaLR 416 479 -136 261 0 0 0 chr12 131513652 131513681 -12768808 + (TC)n Simple_repeat Simple_repeat 2 30 0 449 204 282 0 chr12 131513681 131513732 -12768757 + MLT1L LTR MaLR 479 597 -18 492 32 0 0 chr12 131514113 131514175 -12768314 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1737 148 82 0 chr12 131514188 131514458 -12768031 - AluJb SINE Alu -20 292 1 1191 195 4 8 chr12 131514458 131514720 -12767769 - L1MB3 LINE L1 -351 5832 5572 23 0 0 0 chr12 131514897 131514920 -12767569 + AT_rich Low_complexity Low_complexity 1 23 0 2120 154 7 0 chr12 131514922 131515228 -12767261 + AluSq SINE Alu 1 308 -5 207 0 0 0 chr12 131516052 131516075 -12766414 + (TC)n Simple_repeat Simple_repeat 2 24 0 33 43 0 0 chr12 131516385 131516432 -12766057 + AT_rich Low_complexity Low_complexity 1 47 0 2301 112 0 0 chr12 131516499 131516793 -12765696 - AluSg1 SINE Alu -15 294 1 1272 150 33 28 chr12 131516983 131517196 -12765293 + AluJo SINE Alu 1 214 -98 895 152 0 0 chr12 131517195 131517320 -12765169 - AluJo/FLAM SINE Alu -187 125 1 * 606 267 103 53 chr12 131517323 131517404 -12765085 - MLT1J LTR MaLR -173 338 262 2008 124 0 11 chr12 131517404 131517686 -12764803 + AluSx SINE Alu 33 311 -1 606 267 103 53 chr12 131517686 131517866 -12764623 - MLT1J LTR MaLR -249 262 64 1255 297 115 0 chr12 131518528 131518955 -12763534 + MLT1K LTR MaLR 1 476 0 2430 103 0 0 chr12 131519070 131519380 -12763109 - AluSx SINE Alu -2 310 1 192 182 0 0 chr12 131519451 131519495 -12762994 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 223 260 26 52 chr12 131519593 131519670 -12762819 - L2 LINE L2 -1 3271 3197 1301 174 4 17 chr12 131519699 131519934 -12762555 - AluJo SINE Alu 0 312 81 639 286 18 6 chr12 131519962 131520130 -12762359 + MIR SINE MIR 27 196 -66 749 187 133 54 chr12 131520309 131520480 -12762009 + MER20 DNA MER1_type 1 192 -27 2081 149 0 13 chr12 131520480 131520796 -12761693 + AluJo SINE Alu 1 312 0 749 187 133 54 chr12 131520796 131520827 -12761662 + MER20 DNA MER1_type 192 219 0 336 147 0 107 chr12 131520861 131520936 -12761553 + L2 LINE L2 3247 3313 0 183 100 0 0 chr12 131520948 131520978 -12761511 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 479 284 118 24 chr12 131521437 131521648 -12760841 - L2 LINE L2 0 3313 3083 323 136 0 0 chr12 131521653 131521712 -12760777 - L1MB5 LINE L1 -1 6173 6115 811 126 0 0 chr12 131521717 131521828 -12760661 + FLAM_C SINE Alu 7 117 -26 2204 164 45 16 chr12 131521833 131521904 -12760585 - L1MB5 LINE L1 -43 6131 6061 1659 210 50 118 chr12 131521904 131522279 -12760210 - L1MC4 LINE L1 -496 5684 5707 1011 105 8 0 chr12 131522279 131522412 -12760077 + AluSq/x SINE Alu 1 134 -178 1659 210 50 118 chr12 131522412 131522810 -12759679 - L1MC4 LINE L1 -472 5708 5285 1231 136 0 0 chr12 131522830 131523006 -12759483 - AluSg/x SINE Alu 0 312 137 621 217 13 70 chr12 131523012 131523055 -12759434 - L2 LINE L2 -244 3069 3025 2463 70 3 7 chr12 131523055 131523357 -12759132 - AluY SINE Alu -10 301 1 621 217 13 70 chr12 131523357 131523470 -12759019 - L2 LINE L2 -288 3025 2922 229 267 17 17 chr12 131523459 131523519 -12758970 + MIR SINE MIR 90 149 -59 * 504 219 130 0 chr12 131523585 131523731 -12758758 + MIR SINE MIR 86 250 -12 1783 129 4 0 chr12 131523770 131524011 -12758478 - AluJb SINE Alu -70 242 1 252 86 0 0 chr12 131524012 131524047 -12758442 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 1025 155 19 0 chr12 131524048 131524203 -12758286 - FRAM SINE Alu -19 157 1 356 320 19 0 chr12 131524681 131524784 -12757705 + MIR SINE MIR 25 129 -79 192 276 0 17 chr12 131525208 131525266 -12757223 - MIR SINE MIR -110 152 96 684 134 143 0 chr12 131525275 131525387 -12757102 - FLAM_A SINE Alu -5 128 1 1286 158 22 127 chr12 131525729 131525946 -12756543 - AluYb8 SINE Alu 0 318 151 2112 139 7 0 chr12 131525946 131526248 -12756241 - AluSx SINE Alu -8 304 1 1286 158 22 127 chr12 131526248 131526385 -12756104 - AluYb8 SINE Alu -167 151 1 7601 148 58 23 chr12 131526385 131527758 -12754731 - L1M1 LINE L1 -5181 2384 963 447 169 0 0 chr12 131528323 131528400 -12754089 - L1M1 LINE L1 -6607 958 882 * 619 171 86 14 chr12 131528383 131528523 -12753966 - L1M1 LINE L1 -7196 369 220 * 2975 196 18 35 chr12 131528496 131529110 -12753379 - L1M1 LINE L1 -6906 659 55 2512 67 7 0 chr12 131529110 131529409 -12753080 - AluY SINE Alu -10 301 1 2975 196 18 35 chr12 131529409 131529456 -12753033 - L1M1 LINE L1 -7510 55 9 2230 129 7 0 chr12 131529706 131530016 -12752473 - AluSx SINE Alu 0 312 1 307 312 98 33 chr12 131530332 131530669 -12751820 - HAL1b LINE L1 -710 638 280 2233 113 0 10 chr12 131530679 131530981 -12751508 - AluSx SINE Alu -13 299 1 226 197 42 0 chr12 131531401 131531472 -12751017 + L1 LINE L1 2799 2872 -3274 2418 100 3 0 chr12 131531524 131531835 -12750654 - AluSx SINE Alu 0 312 1 1011 164 6 6 chr12 131531839 131532004 -12750485 - FRAM SINE Alu -1 165 1 1196 173 56 0 chr12 131532076 131532307 -12750182 - L1MA4 LINE L1 -289 6011 5768 1240 176 9 5 chr12 131532307 131532517 -12749972 - AluJb SINE Alu -101 211 1 4802 152 28 39 chr12 131532519 131532692 -12749797 - L1MA4 LINE L1 -770 5376 5203 3187 154 15 4 chr12 131532692 131533173 -12749316 + MER66B LTR ERV1 1 486 0 4802 152 28 39 chr12 131533173 131533359 -12749130 - L1MA4 LINE L1 -943 5203 5017 1804 170 3 10 chr12 131533359 131533648 -12748841 + AluJb SINE Alu 2 288 -24 4802 152 28 39 chr12 131533648 131533821 -12748668 - L1MA4 LINE L1 -1129 5017 4844 2360 108 0 10 chr12 131533821 131534127 -12748362 + AluSx SINE Alu 1 303 -9 4802 152 28 39 chr12 131534127 131534654 -12747835 - L1MA4 LINE L1 -1302 4844 4326 1096 162 49 34 chr12 131534654 131534858 -12747631 + AluJb SINE Alu 84 290 -22 4215 150 16 12 chr12 131534859 131535393 -12747096 - L1MA4 LINE L1 -1811 4335 3796 4053 108 25 13 chr12 131535393 131535867 -12746622 + LTR43 LTR ERV1 1 485 -117 2094 88 77 0 chr12 131535867 131536141 -12746348 - AluSp SINE Alu -18 295 1 4053 108 25 13 chr12 131536141 131536261 -12746228 + LTR43 LTR ERV1 485 602 0 4215 150 16 12 chr12 131536261 131536526 -12745963 - L1MA4 LINE L1 -2350 3796 3533 2043 117 39 0 chr12 131536829 131537111 -12745378 - AluSx SINE Alu -19 293 1 2089 100 3 28 chr12 131537869 131538222 -12744267 + AluSp SINE Alu 1 346 0 2207 120 0 10 chr12 131538314 131538615 -12743874 + AluSx SINE Alu 1 298 -14 1668 166 153 42 chr12 131539903 131540293 -12742196 - L1MA9 LINE L1 -5 6307 5962 225 0 0 0 chr12 131540293 131540318 -12742171 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1890 118 25 0 chr12 131540318 131540598 -12741891 - AluSx SINE Alu -25 287 1 1668 166 153 42 chr12 131540598 131541196 -12741293 - L1MA9 LINE L1 -349 5963 4982 4332 130 124 29 chr12 131541299 131542571 -12739918 + pTR5 LTR ERV1 743 2438 0 1256 261 84 11 chr12 131543759 131544200 -12738289 - L1MC2 LINE L1 -13 6331 5859 215 271 17 17 chr12 131546465 131546524 -12735965 + L2 LINE L2 3235 3293 -20 400 248 51 0 chr12 131546724 131546841 -12735648 - MER3 DNA MER1_type -66 143 21 298 300 13 66 chr12 131548227 131548386 -12734103 + MIR SINE MIR 41 192 -61 805 230 76 101 chr12 131549768 131550180 -12732309 - MER66A LTR ERV1 -10 468 99 288 350 124 18 chr12 131550544 131550761 -12731728 - MIR SINE MIR -21 241 2 3186 231 56 24 chr12 131551169 131551654 -12730835 - L1MB7 LINE L1 -18 6664 6196 2311 68 14 0 chr12 131551654 131551946 -12730543 - AluSp SINE Alu -15 298 3 3186 231 56 24 chr12 131551946 131552623 -12729866 - L1MB7 LINE L1 -486 6196 5542 1809 130 0 11 chr12 131552623 131552928 -12729561 - AluSx SINE Alu 0 312 17 3186 231 56 24 chr12 131552928 131553457 -12729032 - L1MB7 LINE L1 -1140 5542 4908 1836 149 0 0 chr12 131553457 131553772 -12728717 - AluSx SINE Alu 0 315 1 3186 231 56 24 chr12 131553772 131553867 -12728622 - L1MB7 LINE L1 -1774 4908 4817 415 209 32 14 chr12 131553959 131554067 -12728422 + L1ME LINE L1 5538 5632 -489 647 185 13 0 chr12 131554073 131554224 -12728265 - L1MA7 LINE L1 0 6291 6139 1360 221 22 68 chr12 131554229 131554446 -12728043 - L1MB7 LINE L1 -1834 4810 4623 2286 90 3 0 chr12 131554446 131554745 -12727744 + AluSp SINE Alu 1 300 -13 1360 221 22 68 chr12 131554745 131554980 -12727509 - L1MB7 LINE L1 -2021 4623 4379 3250 213 60 78 chr12 131555657 131555794 -12726695 - L1MB7 LINE L1 -2244 4400 4262 1947 136 3 16 chr12 131555794 131556110 -12726379 - AluJb SINE Alu 0 312 1 3250 213 60 78 chr12 131556110 131556497 -12725992 - L1MB7 LINE L1 -2382 4262 3870 2478 62 0 0 chr12 131556497 131556802 -12725687 - AluY SINE Alu -6 305 1 3250 213 60 78 chr12 131556802 131557677 -12724812 - L1MB7 LINE L1 -2774 3870 3025 6385 72 20 52 chr12 131557697 131560047 -12722442 - SVA Other Other -518 1386 5 1133 228 35 74 chr12 131560068 131560890 -12721599 - L1MB7 LINE L1 -3604 3040 2259 804 191 259 8 chr12 131560950 131561186 -12721303 - AluYa8 SINE Alu -11 299 5 1020 237 26 11 chr12 131561235 131561501 -12720988 - L1MB7 LINE L1 -4572 2074 1805 1246 167 84 0 chr12 131561504 131561767 -12720722 - L1MA9 LINE L1 -3 6309 6025 1979 195 37 52 chr12 131561767 131562173 -12720316 - L1MB7 LINE L1 -4854 1792 1379 1795 207 46 18 chr12 131562173 131562627 -12719862 + MLT1C LTR MaLR 1 467 0 1979 195 37 52 chr12 131562627 131562902 -12719587 - L1MB7 LINE L1 -5267 1379 1101 1946 228 41 5 chr12 131562911 131563354 -12719135 - MER68 LTR ERV1 0 562 104 2293 250 33 33 chr12 131563354 131563986 -12718503 - L1MB7 LINE L1 -5910 632 1 2149 116 3 0 chr12 131564098 131564401 -12718088 + AluSp SINE Alu 3 306 -7 2370 76 0 0 chr12 131564601 131564902 -12717587 - AluY SINE Alu -10 301 1 1888 155 0 0 chr12 131564902 131565199 -12717290 - AluJo SINE Alu -14 298 2 886 129 0 0 chr12 131565213 131565345 -12717144 + AluJb SINE Alu 164 295 -17 65 43 0 0 chr12 131565569 131565662 -12716827 + AT_rich Low_complexity Low_complexity 1 93 0 982 179 134 0 chr12 131565976 131566199 -12716290 + HSATI Satellite Satellite 311 563 -14 26 64 0 0 chr12 131566547 131566594 -12715895 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr12 131566806 131566839 -12715650 + AT_rich Low_complexity Low_complexity 1 33 0 997 105 0 0 chr12 131567186 131567319 -12715170 - AluSq/x SINE Alu -179 133 1 290 287 93 16 chr12 131567644 131567773 -12714716 - MIR SINE MIR -110 152 14 2005 117 0 3 chr12 131568123 131568414 -12714075 - AluSq SINE Alu -23 290 1 3523 197 59 53 chr12 131568460 131569085 -12713404 + L1MCa LINE L1 816 1435 -4991 2195 107 7 0 chr12 131569085 131569395 -12713094 + AluSx SINE Alu 1 312 0 3523 197 59 53 chr12 131569395 131569461 -12713028 + L1MCa LINE L1 1435 1499 -4927 1662 190 3 3 chr12 131569461 131569766 -12712723 + AluJb SINE Alu 1 305 -7 3523 197 59 53 chr12 131569766 131570118 -12712371 + L1MCa LINE L1 1499 1867 -4559 2201 105 0 6 chr12 131570522 131570837 -12711652 + AluSq SINE Alu 1 313 0 665 167 8 68 chr12 131571190 131571322 -12711167 + FLAM_A SINE Alu 1 124 -9 2797 10 0 0 chr12 131571360 131571672 -12710817 - AluYb8 SINE Alu -6 312 1 2094 101 20 7 chr12 131571678 131571974 -12710515 - AluSx SINE Alu -12 300 1 339 227 0 0 chr12 131572393 131572459 -12710030 - L2 LINE L2 0 3272 3207 335 257 0 0 chr12 131572527 131572597 -12709892 + L2 LINE L2 3226 3295 -18 582 331 53 16 chr12 131572618 131572813 -12709676 + MIR SINE MIR 6 213 -49 1745 158 7 19 chr12 131572813 131573123 -12709366 + AluJb SINE Alu 1 306 -6 582 331 53 16 chr12 131573123 131573172 -12709317 + MIR SINE MIR 213 259 -3 1310 136 28 9 chr12 131573881 131574095 -12708394 - AluJb SINE Alu -10 302 85 2057 74 64 7 chr12 131574220 131574516 -12707973 - AluSq SINE Alu 0 313 1 268 43 43 0 chr12 131575056 131575102 -12707387 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2011 81 44 34 chr12 131575252 131575550 -12706939 + AluSx SINE Alu 10 310 -2 300 228 62 117 chr12 131575886 131576031 -12706458 + MIR3 SINE MIR 5 141 -67 378 0 0 0 chr12 131576106 131576148 -12706341 + (ATG)n Simple_repeat Simple_repeat 2 43 0 801 138 0 0 chr12 131576224 131576340 -12706149 + FLAM_C SINE Alu 1 116 -17 59 27 0 0 chr12 131576340 131576413 -12706076 + AT_rich Low_complexity Low_complexity 1 73 0 2249 74 16 19 chr12 131576499 131576811 -12705678 + AluY SINE Alu 1 311 0 1605 169 35 7 chr12 131577142 131577426 -12705063 + AluJo SINE Alu 1 292 -20 1893 118 6 63 chr12 131578150 131578481 -12704008 - AluSx SINE Alu 0 312 1 2218 103 0 3 chr12 131578487 131578799 -12703690 - AluSx SINE Alu -1 311 1 247 230 62 53 chr12 131579336 131579449 -12703040 + L1ME LINE L1 51 164 -5906 2012 133 0 3 chr12 131579466 131579774 -12702715 + AluSx SINE Alu 1 307 -5 1085 254 28 13 chr12 131579788 131580243 -12702246 + L1MD2 LINE L1 5835 6347 -12 566 250 6 64 chr12 131580326 131580364 -12702125 + MER3 DNA MER1_type 1 40 -122 1536 160 25 7 chr12 131580364 131580646 -12701843 - AluJb SINE Alu -21 291 5 566 250 6 64 chr12 131580646 131580779 -12701710 + MER3 DNA MER1_type 40 162 -47 844 179 22 22 chr12 131580779 131580958 -12701531 - AluJo SINE Alu -11 301 123 2234 115 0 0 chr12 131581915 131582227 -12700262 - AluSx SINE Alu 0 312 1 1308 176 67 11 chr12 131582340 131582624 -12699865 - AluJo SINE Alu -12 300 1 210 162 0 0 chr12 131582760 131582797 -12699692 + (TAA)n Simple_repeat Simple_repeat 3 39 0 41 41 0 14 chr12 131582874 131582927 -12699562 + AT_rich Low_complexity Low_complexity 1 54 -18 1648 132 0 4 chr12 131582927 131583178 -12699311 + AluJb SINE Alu 39 288 -24 41 41 0 14 chr12 131583178 131583197 -12699292 + AT_rich Low_complexity Low_complexity 54 72 0 21 0 0 0 chr12 131583223 131583244 -12699245 + AT_rich Low_complexity Low_complexity 1 21 0 2029 109 0 23 chr12 131583330 131583633 -12698856 - AluSx SINE Alu -16 296 1 242 230 53 13 chr12 131583765 131583861 -12698628 - L1M LINE L1 -977 5356 5258 859 145 0 81 chr12 131583871 131584043 -12698446 - AluSg/x SINE Alu -3 307 150 448 235 27 40 chr12 131584066 131584215 -12698274 - LTR16A1 LTR ERVL -310 147 1 1871 135 0 32 chr12 131584285 131584597 -12697892 + AluSx SINE Alu 1 302 -10 827 283 44 0 chr12 131584699 131584950 -12697539 - MIR SINE MIR 0 262 1 472 207 11 0 chr12 131584971 131585058 -12697431 + L2 LINE L2 3185 3272 0 975 123 65 0 chr12 131585330 131585485 -12697004 + MLT1J LTR MaLR 1 165 -346 255 291 27 36 chr12 131586035 131586145 -12696344 + L2 LINE L2 999 1107 -2207 314 179 0 0 chr12 131586151 131586207 -12696282 - MLT1K LTR MaLR -10 578 523 1679 174 7 3 chr12 131586218 131586505 -12695984 + AluJo SINE Alu 1 288 -24 1827 163 264 53 chr12 131586585 131586669 -12695820 - MLT2B3 LTR ERVL -1 553 488 2234 88 143 29 chr12 131586669 131586865 -12695624 - MSTA LTR MaLR 0 428 256 1654 133 12 0 chr12 131586865 131587121 -12695368 - AluSx SINE Alu -12 300 42 2234 88 143 29 chr12 131587121 131587308 -12695181 - MSTA LTR MaLR -172 256 1 1827 163 264 53 chr12 131587308 131587678 -12694811 - MLT2B3 LTR ERVL -66 488 3 719 118 0 31 chr12 131587809 131587936 -12694553 + LTR19C LTR ERV1 307 429 -350 1980 140 0 0 chr12 131588049 131588341 -12694148 + AluSx SINE Alu 2 293 -19 774 220 75 25 chr12 131588398 131588639 -12693850 + PABL_B LTR ERV1 411 663 -4 2182 103 0 3 chr12 131588793 131589094 -12693395 + AluSq SINE Alu 1 300 -13 317 226 39 69 chr12 131589094 131589186 -12693303 - L1MC4 LINE L1 -1338 6704 6614 238 11 35 92 chr12 131589188 131589275 -12693214 + (TA)n Simple_repeat Simple_repeat 1 82 0 366 232 12 46 chr12 131589276 131589393 -12693096 + L1MC4 LINE L1 1959 6983 -1339 325 348 0 0 chr12 131589352 131589441 -12693048 - L1MC4 LINE L1 -1339 6703 6615 * 753 221 60 74 chr12 131589441 131589740 -12692749 - MLT1H LTR MaLR -226 323 29 2111 97 7 10 chr12 131589767 131590075 -12692414 - AluSx SINE Alu -5 307 1 702 181 0 0 chr12 131590303 131590419 -12692070 - AluJb SINE Alu -17 295 180 323 199 87 49 chr12 131590419 131590502 -12691987 + AluJo SINE Alu 100 176 -121 1463 139 8 42 chr12 131590502 131590761 -12691728 + AluJb SINE Alu 42 291 -21 1052 76 35 0 chr12 131590769 131590940 -12691549 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 360 256 116 8 chr12 131590949 131591070 -12691419 + LTR16C LTR ERVL 358 491 0 240 370 151 0 chr12 131591608 131591800 -12690689 + L2 LINE L2 1773 1993 -1321 815 204 14 0 chr12 131591885 131592032 -12690457 + FRAM SINE Alu 1 146 -30 580 301 104 39 chr12 131592164 131592550 -12689939 + L2 LINE L2 2344 2754 -560 1964 140 3 7 chr12 131592616 131592924 -12689565 - AluJb SINE Alu -1 311 5 1978 237 56 11 chr12 131592928 131593464 -12689025 + L2 LINE L2 1983 2542 -772 508 232 79 17 chr12 131593467 131593644 -12688845 + L1MC5 LINE L1 7745 7932 -29 1465 208 39 177 chr12 131593651 131594004 -12688485 + L2 LINE L2 2565 2965 -348 2259 93 0 0 chr12 131594004 131594304 -12688185 + AluSq SINE Alu 1 300 -13 1465 208 39 177 chr12 131594304 131594508 -12687981 + L2 LINE L2 2965 3195 -118 1839 84 56 0 chr12 131594508 131594759 -12687730 - AluY SINE Alu -9 302 38 1465 208 39 177 chr12 131594759 131594856 -12687633 + L2 LINE L2 3195 3063 -250 318 26 0 0 chr12 131594856 131594895 -12687594 + (CA)n Simple_repeat Simple_repeat 2 40 0 1465 208 39 177 chr12 131594895 131595116 -12687373 + L2 LINE L2 3062 3312 -1 1017 174 0 0 chr12 131595302 131595474 -12687015 - FRAM SINE Alu -12 164 1 288 284 59 0 chr12 131595516 131595618 -12686871 + L2 LINE L2 2584 2691 -623 823 234 0 46 chr12 131595660 131595738 -12686751 - L2 LINE L2 -1009 2305 2225 1958 110 27 3 chr12 131595738 131596037 -12686452 + AluSg SINE Alu 3 308 -2 823 234 0 46 chr12 131596037 131596176 -12686313 - L2 LINE L2 -1089 2225 2098 368 113 0 0 chr12 131596178 131596231 -12686258 - FLAM_A SINE Alu -23 110 58 423 209 85 0 chr12 131596479 131596608 -12685881 + L1M4 LINE L1 5022 5161 -985 2307 68 0 10 chr12 131596615 131596908 -12685581 - AluSq SINE Alu -16 297 8 21 36 0 0 chr12 131596913 131596941 -12685548 + AT_rich Low_complexity Low_complexity 1 28 0 807 134 0 0 chr12 131596976 131597095 -12685394 - FLAM_C SINE Alu -12 131 13 333 255 189 26 chr12 131597340 131597430 -12685059 + MER5B DNA MER1_type 1 75 -103 2208 79 7 0 chr12 131597430 131597722 -12684767 + AluSx SINE Alu 3 296 -16 333 255 189 26 chr12 131597722 131597784 -12684705 + MER5B DNA MER1_type 75 178 0 2003 87 52 3 chr12 131597920 131598206 -12684283 + AluSq SINE Alu 7 306 -7 1708 135 3 14 chr12 131598608 131598905 -12683584 - AluJo SINE Alu -18 294 1 29 28 0 0 chr12 131598939 131598975 -12683514 + GC_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr12 131599071 131599096 -12683393 + GC_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr12 131599364 131599400 -12683089 + GC_rich Low_complexity Low_complexity 1 36 0 1463 125 53 53 chr12 131599505 131599808 -12682681 + AluJo SINE Alu 1 303 -9 2284 87 10 0 chr12 131600360 131600670 -12681819 - AluSq SINE Alu 0 313 1 261 282 194 10 chr12 131600698 131600801 -12681688 - L2 LINE L2 0 3313 3192 402 278 56 0 chr12 131601228 131601336 -12681153 - L2 LINE L2 0 3313 3200 1887 110 19 32 chr12 131601440 131601748 -12680741 + AluSx SINE Alu 1 304 -8 2118 100 10 3 chr12 131601750 131602050 -12680439 + AluSp SINE Alu 3 304 -9 1767 174 0 3 chr12 131602327 131602625 -12679864 + AluJo SINE Alu 1 297 -15 1222 95 0 34 chr12 131602625 131602804 -12679685 + AluJb SINE Alu 1 173 -139 24 0 0 0 chr12 131602804 131602828 -12679661 + AT_rich Low_complexity Low_complexity 1 24 0 1981 143 10 0 chr12 131602828 131603129 -12679360 + AluSx SINE Alu 1 304 -8 1820 157 35 64 chr12 131603145 131603861 -12678628 + L1MB7 LINE L1 4981 5674 -510 2045 101 19 23 chr12 131603863 131604171 -12678318 + AluSx SINE Alu 1 307 -5 275 200 100 12 chr12 131604210 131604290 -12678199 + MER50 LTR ERV1 518 604 -130 2702 166 26 26 chr12 131604292 131604590 -12677899 + L1MB7 LINE L1 5661 5962 -222 2215 75 4 0 chr12 131604590 131604892 -12677597 + AluSp SINE Alu 1 303 0 2702 166 26 26 chr12 131604892 131605099 -12677390 + L1MB7 LINE L1 5961 6167 -17 1860 144 3 3 chr12 131605230 131605529 -12676960 - AluJb SINE Alu -13 299 1 231 243 146 10 chr12 131605674 131605777 -12676712 + MLT1K LTR MaLR 185 301 -287 21 0 0 0 chr12 131606601 131606622 -12675867 + AT_rich Low_complexity Low_complexity 1 21 0 2020 108 3 10 chr12 131606786 131607083 -12675406 - AluSx SINE Alu -17 295 1 431 212 0 0 chr12 131607098 131607183 -12675306 - L1M4 LINE L1 -855 5291 5207 2370 81 3 0 chr12 131607641 131607949 -12674540 - AluSp SINE Alu -4 309 1 189 0 0 0 chr12 131607966 131607987 -12674502 + (A)n Simple_repeat Simple_repeat 1 21 0 677 198 0 0 chr12 131607987 131608103 -12674386 - FLAM_C SINE Alu -26 117 2 2245 96 0 3 chr12 131608124 131608437 -12674052 - AluSx SINE Alu 0 312 1 795 140 28 0 chr12 131608712 131608855 -12673634 + AluSg/x SINE Alu 166 312 0 238 190 270 29 chr12 131608856 131608993 -12673496 - L1ME LINE L1 -479 5642 5473 1785 141 0 25 chr12 131609127 131609411 -12673078 - AluJb SINE Alu -14 298 22 1372 160 78 36 chr12 131610415 131610696 -12671793 + AluJo SINE Alu 6 298 -14 1470 163 14 34 chr12 131610709 131610981 -12671508 + AluJo SINE Alu 25 292 -20 2040 123 0 19 chr12 131610981 131611298 -12671191 + AluSx SINE Alu 1 311 -1 1470 163 14 34 chr12 131611298 131611319 -12671170 + AluJo SINE Alu 292 312 0 2021 128 0 0 chr12 131611386 131611674 -12670815 + AluSx SINE Alu 2 289 -23 431 307 113 24 chr12 131612349 131612561 -12669928 + MIR SINE MIR 31 261 -1 308 317 67 43 chr12 131613755 131613919 -12668570 + MIR SINE MIR 20 187 -75 728 237 82 40 chr12 131614493 131614746 -12667743 + MIR SINE MIR 3 261 -1 2099 107 0 13 chr12 131614944 131615252 -12667237 - AluSg SINE Alu -6 304 1 2180 108 3 0 chr12 131615418 131615715 -12666774 - AluSq SINE Alu -15 298 1 690 252 48 24 chr12 131615850 131616060 -12666429 - MER58C DNA MER1_type 0 215 1 2315 83 7 0 chr12 131617775 131618076 -12664413 + AluSx SINE Alu 1 303 -9 1949 103 39 0 chr12 131618076 131618357 -12664132 + AluSg SINE Alu 1 292 -18 706 181 112 54 chr12 131619151 131619189 -12663300 + L1M4c LINE L1 2221 2255 -4129 1769 157 0 10 chr12 131619189 131619483 -12663006 + AluJo SINE Alu 1 291 -21 706 181 112 54 chr12 131619483 131619566 -12662923 + L1M4c LINE L1 2255 2332 -4052 2120 123 0 0 chr12 131619566 131619867 -12662622 + AluSx SINE Alu 4 304 -8 706 181 112 54 chr12 131619867 131620004 -12662485 + L1M4c LINE L1 2332 2495 -3889 975 181 0 16 chr12 131620004 131620197 -12662292 + AluJo SINE Alu 118 307 -5 2345 192 49 52 chr12 131620200 131620462 -12662027 + L1M4c LINE L1 2504 2765 -3617 1476 203 3 7 chr12 131620462 131620757 -12661732 + AluJb SINE Alu 1 294 -18 2345 192 49 52 chr12 131620757 131621187 -12661302 + L1M4c LINE L1 2765 3194 -3188 1201 126 0 40 chr12 131621193 131621392 -12661097 + AluSx SINE Alu 1 191 -121 416 85 68 0 chr12 131621392 131621451 -12661038 + AluY SINE Alu 57 119 -192 859 126 84 60 chr12 131621551 131621718 -12660771 - AluJo SINE Alu -58 254 84 1213 164 34 0 chr12 131621719 131621926 -12660563 - AluJo SINE Alu -98 214 1 497 232 99 26 chr12 131622164 131622315 -12660174 + L2 LINE L2 3134 3295 -18 809 158 0 36 chr12 131622530 131622669 -12659820 + FLAM_C SINE Alu 5 138 -5 2070 107 3 13 chr12 131622694 131622993 -12659496 + AluSx SINE Alu 1 296 -16 655 297 53 89 chr12 131623275 131623659 -12658830 - L3 LINE CR1 -115 1462 1099 1575 177 13 23 chr12 131623659 131623958 -12658531 + AluJo SINE Alu 6 301 -11 655 297 53 89 chr12 131623958 131624078 -12658411 - L3 LINE CR1 -478 1099 976 2364 81 0 0 chr12 131624817 131625124 -12657365 - AluSq SINE Alu -6 307 1 2192 83 0 7 chr12 131626054 131626356 -12656133 + AluSq SINE Alu 1 300 -13 2227 100 0 0 chr12 131626596 131626897 -12655592 + AluSc SINE Alu 1 301 -8 5139 188 45 21 chr12 131627160 131627382 -12655107 - L1MB5 LINE L1 -286 5888 5673 2524 55 0 0 chr12 131627382 131627691 -12654798 - AluY SINE Alu 0 311 3 5139 188 45 21 chr12 131627691 131629216 -12653273 - L1MB5 LINE L1 -501 5673 4095 1491 134 14 47 chr12 131629225 131629502 -12652987 + AluSq SINE Alu 6 273 -40 1926 108 0 11 chr12 131629660 131629990 -12652499 + AluJb SINE Alu 1 327 0 2253 94 3 0 chr12 131630000 131630308 -12652181 + AluSg SINE Alu 1 309 -1 24 32 0 0 chr12 131631006 131631037 -12651452 + GC_rich Low_complexity Low_complexity 1 31 0 50 54 0 0 chr12 131631338 131631394 -12651095 + GC_rich Low_complexity Low_complexity 1 56 0 422 236 17 22 chr12 131631394 131631572 -12650917 + (CCCG)n Simple_repeat Simple_repeat 4 180 0 35 51 0 0 chr12 131631576 131631615 -12650874 + GC_rich Low_complexity Low_complexity 1 39 0 2011 124 10 0 chr12 131631738 131632037 -12650452 - AluSq SINE Alu -11 302 1 1599 180 3 0 chr12 131632081 131632389 -12650100 + AluJo SINE Alu 1 309 0 1681 156 7 7 chr12 131632456 131632751 -12649738 - AluJo SINE Alu -17 295 1 184 213 25 25 chr12 131632779 131632859 -12649630 + CT-rich Low_complexity Low_complexity 2 81 0 225 322 0 0 chr12 131632895 131632954 -12649535 + CT-rich Low_complexity Low_complexity 3 61 0 199 167 48 48 chr12 131632982 131633108 -12649381 + CT-rich Low_complexity Low_complexity 6 131 0 248 205 0 60 chr12 131633208 131633291 -12649198 + CT-rich Low_complexity Low_complexity 1 78 0 3287 147 15 4 chr12 131633590 131634127 -12648362 + L1MB7 LINE L1 5533 6075 -109 448 227 84 98 chr12 131634128 131634331 -12648158 + LTR33A LTR ERVL 52 251 -272 258 253 0 63 chr12 131634381 131634476 -12648013 + CT-rich Low_complexity Low_complexity 1 89 0 * 266 354 0 30 chr12 131634413 131634512 -12647977 + polypyrimidine Low_complexity Low_complexity 2 97 0 1414 187 7 27 chr12 131634748 131635042 -12647447 - L1MB7 LINE L1 -78 6106 5819 1920 90 3 33 chr12 131635042 131635343 -12647146 - AluY SINE Alu -11 300 9 2154 88 0 3 chr12 131636300 131636608 -12645881 - AluSg SINE Alu 0 307 1 30 45 0 0 chr12 131636648 131636692 -12645797 + AT_rich Low_complexity Low_complexity 1 44 0 731 121 0 68 chr12 131636692 131636824 -12645665 - FLAM_C SINE Alu -10 123 1 200 273 114 23 chr12 131637007 131637095 -12645394 - L2 LINE L2 -45 3227 3132 260 232 0 14 chr12 131637419 131637488 -12645001 + L1ME2 LINE L1 6097 6164 0 400 327 35 15 chr12 131637737 131637936 -12644553 - L2 LINE L2 -371 2943 2741 265 293 12 12 chr12 131638128 131638210 -12644279 + CT-rich Low_complexity Low_complexity 1 82 0 1690 179 3 19 chr12 131638525 131638837 -12643652 - L1MB7 LINE L1 -148 6036 5730 1773 132 0 62 chr12 131639075 131639400 -12643089 + AluSx SINE Alu 1 305 -7 892 265 34 0 chr12 131640096 131640330 -12642159 + L1 LINE L1 4780 5021 -1125 38 22 0 0 chr12 131640401 131640446 -12642043 + AT_rich Low_complexity Low_complexity 1 45 0 2099 120 3 3 chr12 131640469 131640777 -12641712 + AluSc SINE Alu 1 308 -1 719 262 65 9 chr12 131641241 131641455 -12641034 - MIR SINE MIR -36 226 1 475 264 23 8 chr12 131641840 131641969 -12640520 - LTR16C LTR ERVL -46 445 315 759 304 111 34 chr12 131641975 131642187 -12640302 - L2 LINE L2 0 3313 3119 2081 108 9 19 chr12 131642187 131642502 -12639987 + AluSx SINE Alu 1 312 0 759 304 111 34 chr12 131642502 131643096 -12639393 - L2 LINE L2 -194 3119 2432 846 275 141 22 chr12 131643206 131643610 -12638879 - LTR33 LTR ERVL -2 519 68 228 281 16 0 chr12 131644046 131644110 -12638379 + L2 LINE L2 2937 3001 -312 309 221 150 43 chr12 131644155 131644295 -12638194 + L2 LINE L2 3109 3263 -50 1716 178 0 3 chr12 131645238 131645531 -12636958 + AluJo SINE Alu 1 292 -20 372 246 119 8 chr12 131646023 131646149 -12636340 + MIR SINE MIR 73 212 -50 2151 112 0 0 chr12 131646273 131646569 -12635920 + AluSx SINE Alu 1 296 -16 804 125 0 0 chr12 131646874 131646986 -12635503 + AluSq/x SINE Alu 2 113 -200 455 106 15 0 chr12 131646985 131647051 -12635438 - AluJ/FLAM SINE Alu -216 96 30 * 1565 164 3 40 chr12 131647169 131647493 -12634996 + AluJo SINE Alu 1 312 0 1918 99 62 14 chr12 131647605 131647897 -12634592 - AluSq SINE Alu -7 306 1 38 94 0 0 chr12 131648200 131648253 -12634236 + AT_rich Low_complexity Low_complexity 1 53 0 5962 123 193 50 chr12 131648365 131649610 -12632879 + pTR5 LTR ERV1 1016 2438 0 1664 154 22 4 chr12 131649841 131650113 -12632376 - AluSx SINE Alu -35 277 1 330 125 0 0 chr12 131650114 131650162 -12632327 - AluJb SINE Alu -167 135 88 1024 192 35 15 chr12 131650164 131650367 -12632122 - AluJo SINE Alu -92 220 14 784 234 0 0 chr12 131650873 131651018 -12631471 - FRAM SINE Alu -30 146 2 1418 186 32 7 chr12 131651174 131651454 -12631035 - AluJb SINE Alu -23 289 3 305 148 0 0 chr12 131651492 131651546 -12630943 - L1MB5 LINE L1 -6 6168 6115 2151 117 0 13 chr12 131651547 131651863 -12630626 + AluSq SINE Alu 1 312 -1 2933 226 41 11 chr12 131651863 131652625 -12629864 + L1M4 LINE L1 3093 3885 -2261 1773 138 3 40 chr12 131652625 131652929 -12629560 + AluSg SINE Alu 1 293 -17 2933 226 41 11 chr12 131652929 131653022 -12629467 + L1M4 LINE L1 3885 3974 -2172 1494 189 0 42 chr12 131653153 131653466 -12629023 + AluJb SINE Alu 1 300 -12 1805 151 0 7 chr12 131653578 131653877 -12628612 - AluJo SINE Alu -15 297 1 2513 20 3 3 chr12 131653959 131654256 -12628233 - AluYa5 SINE Alu -14 297 1 1958 132 3 7 chr12 131654256 131654559 -12627930 - AluSx SINE Alu -10 302 1 632 208 0 16 chr12 131654672 131654831 -12627658 - FLAM_A SINE Alu 0 133 2 1670 171 141 67 chr12 131654891 131655126 -12627363 - MLT1C LTR MaLR -1 466 250 2557 58 0 0 chr12 131655126 131655436 -12627053 - AluSx SINE Alu -2 310 1 1670 171 141 67 chr12 131655436 131655632 -12626857 - MLT1C LTR MaLR -217 250 3 316 190 293 0 chr12 131655719 131655835 -12626654 - LTR33A LTR ERVL -2 521 372 1531 171 0 50 chr12 131655836 131655984 -12626505 + AluJo SINE Alu 1 128 -184 2084 108 7 3 chr12 131655984 131656280 -12626209 + AluSx SINE Alu 1 297 -15 1531 171 0 50 chr12 131656280 131656429 -12626060 + AluJo SINE Alu 128 283 -29 352 98 0 0 chr12 131656429 131656480 -12626009 + (GA)n Simple_repeat Simple_repeat 1 51 0 393 129 0 0 chr12 131656480 131656550 -12625939 + (GAA)n Simple_repeat Simple_repeat 3 72 0 415 256 139 73 chr12 131656550 131656823 -12625666 - LTR33A LTR ERVL -181 342 52 1688 204 36 16 chr12 131656823 131657264 -12625225 - L1MB5 LINE L1 -97 6077 5628 569 124 22 0 chr12 131657370 131657459 -12625030 - AluJ/FLAM SINE Alu -220 92 2 2074 101 3 7 chr12 131657489 131657785 -12624704 + AluSg SINE Alu 1 295 -15 607 301 26 0 chr12 131659231 131659384 -12623105 + MIR SINE MIR 21 177 -85 734 202 0 0 chr12 131659389 131659518 -12622971 + FLAM_C SINE Alu 5 133 -10 1521 153 10 37 chr12 131659574 131659869 -12622620 + AluJb SINE Alu 1 287 -25 506 119 71 0 chr12 131659871 131659955 -12622534 - AluSc SINE Alu -43 266 177 181 414 75 8 chr12 131659996 131660129 -12622360 + L2 LINE L2 3158 3299 -14 1114 190 32 28 chr12 131660200 131660433 -12622056 - L1M4 LINE L1 -743 5403 5167 2064 111 7 0 chr12 131660433 131660731 -12621758 - AluSp SINE Alu -13 300 1 1114 190 32 28 chr12 131660731 131660744 -12621745 - L1M4 LINE L1 -979 5167 5156 489 265 77 22 chr12 131660985 131661166 -12621323 + MIR3 SINE MIR 5 195 -13 1924 118 14 3 chr12 131661182 131661478 -12621011 - AluSq SINE Alu -14 299 1 547 271 0 0 chr12 131661597 131661730 -12620759 - FLAM_A SINE Alu 0 133 1 680 198 0 0 chr12 131661806 131661927 -12620562 - FLAM_C SINE Alu -12 121 1 482 96 14 0 chr12 131661930 131662003 -12620486 + MSTB1 LTR MaLR 358 431 -1 207 0 0 0 chr12 131662312 131662335 -12620154 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2085 94 14 0 chr12 131662337 131662623 -12619866 - AluSg1 SINE Alu -19 290 1 2045 125 7 0 chr12 131662623 131662928 -12619561 - AluSx SINE Alu -5 307 1 195 255 0 21 chr12 131663019 131663066 -12619423 - MIR SINE MIR -112 150 105 418 214 18 27 chr12 131663616 131663728 -12618761 + L1MC5 LINE L1 7803 7913 -48 2498 52 0 3 chr12 131663860 131664166 -12618323 - AluY SINE Alu -6 305 1 2191 74 20 10 chr12 131664174 131664471 -12618018 - AluY SINE Alu -11 300 1 1244 196 79 4 chr12 131664541 131664807 -12617682 - AluJb SINE Alu -24 288 3 1519 137 4 0 chr12 131664816 131665042 -12617447 - AluJb SINE Alu -22 290 64 1719 199 126 78 chr12 131665043 131665545 -12616944 - MER51C LTR ERV1 0 640 115 407 182 0 0 chr12 131665551 131665617 -12616872 - AluJb SINE Alu -236 66 1 1571 174 7 14 chr12 131665627 131665914 -12616575 - AluJo SINE Alu -27 285 1 2414 72 0 0 chr12 131666244 131666550 -12615939 + AluY SINE Alu 1 306 -5 2163 89 0 0 chr12 131666796 131667087 -12615402 + AluY SINE Alu 5 295 -16 329 193 176 25 chr12 131667135 131667254 -12615235 + L1ME4a LINE L1 5985 6121 0 1792 158 3 0 chr12 131667781 131668073 -12614416 + AluJb SINE Alu 4 296 -16 2145 106 0 10 chr12 131668339 131668640 -12613849 + AluSp SINE Alu 4 301 -12 1578 172 24 17 chr12 131668847 131669144 -12613345 + AluJb SINE Alu 1 299 -13 2087 110 0 7 chr12 131669247 131669547 -12612942 - AluSg SINE Alu -12 298 1 2144 112 0 3 chr12 131669990 131670286 -12612203 - AluSx SINE Alu -17 295 1 2310 100 0 0 chr12 131670704 131671013 -12611476 - AluSp SINE Alu -4 309 1 1792 122 0 25 chr12 131671015 131671294 -12611195 - AluJb SINE Alu -19 293 22 805 215 82 4 chr12 131671563 131671842 -12610647 - AluSx SINE Alu -1 301 1 2238 95 3 0 chr12 131672258 131672564 -12609925 - AluSp SINE Alu -4 309 3 212 196 235 0 chr12 131672743 131672794 -12609695 + MIR SINE MIR 195 257 -5 234 244 116 0 chr12 131672831 131672917 -12609572 + L2 LINE L2 3171 3266 -6 495 0 0 0 chr12 131673524 131673579 -12608910 + (TGG)n Simple_repeat Simple_repeat 1 55 0 748 162 45 13 chr12 131673584 131673738 -12608751 - FAM SINE Alu -14 171 13 2269 43 4 0 chr12 131674277 131674591 -12607898 - AluY SINE Alu 0 315 1 395 178 27 0 chr12 131674638 131674704 -12607785 - AluSg/x SINE Alu -29 273 206 249 169 186 0 chr12 131674704 131674763 -12607726 + MER50 LTR ERV1 2 71 -663 1179 151 0 59 chr12 131674764 131674837 -12607652 - AluJo SINE Alu -106 206 130 2025 107 0 29 chr12 131674837 131675146 -12607343 - AluSx SINE Alu -10 302 3 1179 151 0 59 chr12 131675146 131675291 -12607198 - AluJo SINE Alu -182 130 1 351 207 12 37 chr12 131675816 131675898 -12606591 - L2 LINE L2 0 3272 3193 540 258 133 53 chr12 131675907 131676125 -12606364 + Charlie8 DNA MER1_type 1 236 -2181 258 167 0 0 chr12 131676125 131676161 -12606328 + Alu SINE Alu 1 36 -267 180 0 0 0 chr12 131676939 131676959 -12605530 + (A)n Simple_repeat Simple_repeat 1 20 0 214 304 78 20 chr12 131676959 131677061 -12605428 - L2 LINE L2 -165 3107 3000 869 143 0 0 chr12 131677740 131677866 -12604623 + AluSq/x SINE Alu 1 126 -186 252 0 0 0 chr12 131678022 131678050 -12604439 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2446 67 0 6 chr12 131678699 131679011 -12603478 + AluY SINE Alu 1 310 -1 1670 128 67 37 chr12 131679593 131679891 -12602598 - AluSx SINE Alu -5 307 1 1809 122 54 14 chr12 131679972 131680268 -12602221 - AluSx SINE Alu -4 308 1 2138 126 0 0 chr12 131681059 131681369 -12601120 - AluSx SINE Alu -2 310 1 2354 68 14 0 chr12 131681378 131681674 -12600815 - AluY SINE Alu -11 300 1 1766 128 7 3 chr12 131681869 131682172 -12600317 - AluSx SINE Alu 0 304 1 902 152 90 17 chr12 131682508 131682686 -12599803 - L1PA16 LINE L1 -9 6157 5967 873 154 0 0 chr12 131683609 131683739 -12598750 + FLAM_C SINE Alu 1 130 -3 2188 113 0 3 chr12 131683744 131684055 -12598434 + AluSq SINE Alu 1 310 -3 2021 115 0 26 chr12 131684560 131684865 -12597624 - AluSx SINE Alu -15 297 1 915 211 0 17 chr12 131685122 131685297 -12597192 + MER5B DNA MER1_type 6 177 -1 2185 84 7 3 chr12 131685459 131685755 -12596734 + AluSp SINE Alu 1 297 -16 2214 77 0 20 chr12 131685848 131686146 -12596343 + AluSg SINE Alu 6 297 -13 1696 152 24 7 chr12 131686521 131686817 -12595672 - AluJo SINE Alu -11 301 1 23 0 0 0 chr12 131686819 131686842 -12595647 + AT_rich Low_complexity Low_complexity 1 23 0 2037 112 0 20 chr12 131687661 131687820 -12594669 - AluSx SINE Alu -22 290 138 2311 80 0 13 chr12 131687820 131688132 -12594357 - AluY SINE Alu -3 308 1 2037 112 0 20 chr12 131688132 131688268 -12594221 - AluSx SINE Alu -174 138 1 2069 86 27 14 chr12 131688314 131688606 -12593883 - AluSg SINE Alu -12 298 3 2011 131 0 3 chr12 131688610 131688916 -12593573 - AluSx SINE Alu -7 305 1 1168 94 6 0 chr12 131689005 131689165 -12593324 - AluSq SINE Alu -16 297 137 2277 70 7 0 chr12 131689165 131689465 -12593024 - AluY SINE Alu -9 302 1 729 170 7 20 chr12 131690255 131690402 -12592087 - AluSg/x SINE Alu -4 306 162 2161 94 0 7 chr12 131690402 131690701 -12591788 + AluSq SINE Alu 1 297 -16 1148 183 3 63 chr12 131690975 131691259 -12591230 - AluSg SINE Alu -43 267 1 2488 148 32 38 chr12 131691263 131691548 -12590941 - L1MB8 LINE L1 -306 5872 5590 2481 31 3 0 chr12 131691548 131691841 -12590648 + AluY SINE Alu 1 294 -17 2488 148 32 38 chr12 131691841 131692060 -12590429 - L1MB8 LINE L1 -588 5590 5371 1711 113 53 3 chr12 131692534 131692817 -12589672 + AluSq SINE Alu 1 297 -16 214 304 78 20 chr12 131694833 131694935 -12587554 - L2 LINE L2 -165 3107 3000 869 143 0 0 chr12 131695614 131695740 -12586749 + AluSq/x SINE Alu 1 126 -187 252 0 0 0 chr12 131695896 131695924 -12586565 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2446 67 0 6 chr12 131696573 131696885 -12585604 + AluY SINE Alu 1 310 -1 1670 128 67 37 chr12 131697467 131697765 -12584724 - AluSx SINE Alu -5 307 1 1856 115 54 14 chr12 131697846 131698142 -12584347 - AluSx SINE Alu -4 308 1 2138 126 0 0 chr12 131698933 131699243 -12583246 - AluSx SINE Alu -2 310 1 2354 68 14 0 chr12 131699252 131699548 -12582941 - AluY SINE Alu -11 300 1 1766 128 7 3 chr12 131699743 131700046 -12582443 - AluSx SINE Alu 0 304 1 902 152 90 17 chr12 131700382 131700560 -12581929 - L1PA16 LINE L1 -9 6157 5967 873 154 0 0 chr12 131701483 131701613 -12580876 + FLAM_C SINE Alu 1 130 -3 2188 113 0 3 chr12 131701618 131701929 -12580560 + AluSq SINE Alu 1 310 -3 1826 141 0 26 chr12 131702434 131702739 -12579750 - AluSx SINE Alu -15 297 1 915 211 0 17 chr12 131702996 131703171 -12579318 + MER5B DNA MER1_type 6 177 -1 2099 121 0 3 chr12 131703333 131703647 -12578842 + AluSq SINE Alu 1 313 0 1606 177 3 40 chr12 131703672 131703994 -12578495 - AluJo SINE Alu -2 310 1 442 317 43 6 chr12 131704073 131704237 -12578252 - MIR SINE MIR -4 258 89 403 267 45 85 chr12 131704353 131704529 -12577960 + MIR SINE MIR 28 196 -66 2035 105 0 3 chr12 131704633 131704947 -12577542 - AluJb SINE Alu 0 313 1 1147 217 95 52 chr12 131705267 131705687 -12576802 + LTR33 LTR ERVL 80 517 -4 210 37 0 0 chr12 131705739 131705766 -12576723 + (TG)n Simple_repeat Simple_repeat 2 28 0 1675 178 0 13 chr12 131705778 131706092 -12576397 - AluJb SINE Alu -2 310 1 286 291 77 8 chr12 131706352 131706469 -12576020 - MLT1K LTR MaLR -416 172 48 510 224 19 9 chr12 131706543 131706650 -12575839 - L2 LINE L2 -3 3310 3203 1575 163 13 30 chr12 131706679 131706979 -12575510 + AluJb SINE Alu 1 295 -17 707 195 6 25 chr12 131706981 131707282 -12575207 + GA-rich Low_complexity Low_complexity 1 306 -343 2186 112 0 6 chr12 131707282 131707596 -12574893 + AluSx SINE Alu 1 312 0 707 195 6 25 chr12 131707596 131707643 -12574846 + GA-rich Low_complexity Low_complexity 306 649 0 22 0 0 0 chr12 131707816 131707838 -12574651 + AT_rich Low_complexity Low_complexity 1 22 0 347 239 71 35 chr12 131707922 131708035 -12574454 + MLT1K LTR MaLR 210 326 -262 301 376 65 6 chr12 131708145 131708315 -12574174 + MIR3 SINE MIR 14 193 -15 2063 98 3 13 chr12 131708345 131708652 -12573837 - AluY SINE Alu -7 304 1 894 147 0 0 chr12 131708652 131708788 -12573701 - AluSq/x SINE Alu -177 136 1 2069 86 27 14 chr12 131708834 131709126 -12573363 - AluSg SINE Alu -12 298 3 2011 131 0 3 chr12 131709130 131709436 -12573053 - AluSx SINE Alu -7 305 1 1168 94 6 0 chr12 131709525 131709685 -12572804 - AluSq SINE Alu -16 297 137 2277 70 7 0 chr12 131709685 131709985 -12572504 - AluY SINE Alu -9 302 1 729 170 7 20 chr12 131710775 131710922 -12571567 - AluSg/x SINE Alu -4 306 162 2161 94 0 7 chr12 131710922 131711221 -12571268 + AluSq SINE Alu 1 297 -16 181 278 19 0 chr12 131711386 131711440 -12571049 - MIR SINE MIR -111 151 97 1710 160 24 0 chr12 131711449 131711736 -12570753 + AluSx SINE Alu 1 294 -18 25 0 0 0 chr12 131711736 131711761 -12570728 + AT_rich Low_complexity Low_complexity 1 25 0 398 198 129 0 chr12 131711840 131711941 -12570548 + MER53 DNA DNA 3 116 -73 189 0 0 0 chr12 131711951 131711972 -12570517 + (T)n Simple_repeat Simple_repeat 1 21 0 783 195 13 13 chr12 131715769 131715918 -12566571 + FAM SINE Alu 1 149 -36 1732 125 68 7 chr12 131715918 131716198 -12566291 - AluSx SINE Alu -15 297 1 1982 168 42 0 chr12 131716266 131716599 -12565890 + MER7A DNA MER2_type 2 346 0 267 79 0 0 chr12 131717469 131717507 -12564982 + (ATG)n Simple_repeat Simple_repeat 3 40 0 1413 128 64 64 chr12 131718449 131718755 -12563734 + AluJb SINE Alu 1 306 0 26 50 0 0 chr12 131718860 131718900 -12563589 + AT_rich Low_complexity Low_complexity 1 40 0 268 148 0 115 chr12 131718910 131718971 -12563518 - FLAM_A SINE Alu -12 121 68 246 244 77 13 chr12 131720359 131720437 -12562052 - MIR SINE MIR -74 188 106 1580 165 72 0 chr12 131721644 131721935 -12560554 + AluJb SINE Alu 1 312 0 335 328 199 0 chr12 131722006 131722192 -12560297 - MIR SINE MIR -24 238 16 2145 98 10 0 chr12 131722224 131722520 -12559969 + AluSg SINE Alu 1 299 -11 1979 84 0 4 chr12 131722963 131723225 -12559264 - AluY SINE Alu -15 296 36 812 191 25 12 chr12 131723646 131723808 -12558681 - FRAM SINE Alu -19 157 1 1991 139 7 0 chr12 131723814 131724117 -12558372 - AluSx SINE Alu -7 305 1 2047 113 10 13 chr12 131724449 131724751 -12557738 + AluSq SINE Alu 1 301 -12 1628 110 59 8 chr12 131725391 131725646 -12556843 - AluSx SINE Alu -14 298 31 255 282 39 0 chr12 131728060 131728138 -12554351 - L1ME LINE L1 -444 5677 5597 1775 129 0 58 chr12 131728331 131728642 -12553847 - AluSx SINE Alu -19 293 1 244 189 27 27 chr12 131728642 131728707 -12553782 - Tigger8 DNA MER2_type -321 345 278 2176 96 10 16 chr12 131729060 131729374 -12553115 - AluSq SINE Alu 0 313 2 408 195 23 11 chr12 131729633 131729720 -12552769 - AluJ/FLAM SINE Alu -201 101 14 348 191 86 38 chr12 131729769 131729874 -12552615 - L1MC5 LINE L1 -560 7401 7292 735 192 0 0 chr12 131730592 131730712 -12551777 - FLAM_A SINE Alu -13 120 1 867 206 139 19 chr12 131730715 131730982 -12551507 + L1M4 LINE L1 4416 4714 -1432 432 219 21 0 chr12 131730988 131731084 -12551405 + FLAM_A SINE Alu 32 129 -13 1377 172 32 29 chr12 131731090 131731369 -12551120 + AluJb SINE Alu 1 280 -32 744 153 10 99 chr12 131731400 131731446 -12551043 + L1M4 LINE L1 4778 4827 -1319 1775 79 150 19 chr12 131731446 131731713 -12550776 + AluSx SINE Alu 1 302 0 744 153 10 99 chr12 131731713 131731868 -12550621 + L1M4 LINE L1 4827 4961 -1185 2205 89 0 3 chr12 131731868 131732161 -12550328 + AluSg SINE Alu 1 292 -18 1593 131 7 25 chr12 131732245 131732519 -12549970 - AluJb SINE Alu -23 289 21 573 220 51 33 chr12 131732803 131733017 -12549472 + AluSq SINE Alu 3 220 -93 325 128 0 0 chr12 131733134 131733181 -12549308 + Alu SINE Alu 243 289 -12 872 171 0 0 chr12 131733193 131733339 -12549150 + FRAM SINE Alu 1 141 -35 1742 128 0 78 chr12 131733340 131733660 -12548829 - AluSx SINE Alu -17 295 1 235 98 0 73 chr12 131733819 131733860 -12548629 + Alu SINE Alu 87 124 -9 309 238 0 10 chr12 131733896 131733993 -12548496 - AluJ/monomer SINE Alu 0 301 251 280 136 0 0 chr12 131733995 131734039 -12548450 + (C)n Simple_repeat Simple_repeat 1 44 0 220 122 0 82 chr12 131734040 131734089 -12548400 + (TTCCC)n Simple_repeat Simple_repeat 1 45 0 198 139 116 23 chr12 131734351 131734394 -12548095 - L2 LINE L2 0 3313 3267 1614 168 3 14 chr12 131734419 131734710 -12547779 + AluJo SINE Alu 1 288 -24 1213 84 12 6 chr12 131735681 131735847 -12546642 - AluSp SINE Alu -146 167 1 787 165 0 0 chr12 131735909 131736042 -12546447 + L1MB5 LINE L1 5681 5813 -371 21 0 0 0 chr12 131736251 131736272 -12546217 + GC_rich Low_complexity Low_complexity 1 21 0 1274 129 91 0 chr12 131736924 131737134 -12545355 + L1MB5 LINE L1 5945 6173 -1 349 289 21 0 chr12 131737315 131737412 -12545077 + MER5A DNA MER1_type 8 106 -83 2039 120 0 16 chr12 131737419 131737728 -12544761 - AluSx SINE Alu -8 304 1 994 179 35 80 chr12 131738584 131738754 -12543735 + L1MB5 LINE L1 5161 5337 -843 1902 133 0 10 chr12 131738754 131739047 -12543442 + AluSx SINE Alu 23 312 0 994 179 35 80 chr12 131739047 131739284 -12543205 + L1MB5 LINE L1 5337 5531 -649 2224 67 0 7 chr12 131739284 131739602 -12542887 + AluSq SINE Alu 4 319 0 1944 121 23 16 chr12 131740136 131740441 -12542048 + AluSx SINE Alu 1 307 -5 1432 166 3 85 chr12 131740567 131740898 -12541591 - AluJo SINE Alu -8 304 1 315 325 12 6 chr12 131740933 131741093 -12541396 - L1MC5 LINE L1 -482 7479 7319 814 169 7 14 chr12 131741278 131741426 -12541063 + FRAM SINE Alu 1 146 -30 1796 160 3 0 chr12 131741440 131741734 -12540755 + AluSx SINE Alu 1 295 -17 898 170 18 6 chr12 131741886 131742057 -12540432 + L1MB5 LINE L1 5740 5912 -262 686 202 0 0 chr12 131742072 131742196 -12540293 - FLAM_C SINE Alu -19 124 1 1197 159 3 138 chr12 131742196 131742421 -12540068 + L1MB5 LINE L1 5913 6167 -7 1753 113 13 46 chr12 131742421 131742723 -12539766 - AluSx SINE Alu -18 294 3 1197 159 3 138 chr12 131742723 131742737 -12539752 + L1MB5 LINE L1 6167 6108 -66 2076 118 0 7 chr12 131742737 131743034 -12539455 - AluSx SINE Alu -17 295 1 1197 159 3 138 chr12 131743034 131743089 -12539400 + L1MB5 LINE L1 6107 6168 -6 1418 186 32 7 chr12 131743127 131743407 -12539082 + AluJb SINE Alu 3 289 -23 822 252 0 0 chr12 131743564 131743723 -12538766 + FRAM SINE Alu 2 160 -6 972 184 114 89 chr12 131744215 131744333 -12538156 + AluJo SINE Alu 14 127 -185 1990 143 0 6 chr12 131744333 131744647 -12537842 + AluSx SINE Alu 1 312 0 972 184 114 89 chr12 131744647 131744799 -12537690 + AluJo SINE Alu 127 291 -21 1685 154 22 4 chr12 131744810 131745082 -12537407 + AluSx SINE Alu 1 277 -35 7230 129 157 50 chr12 131745313 131746845 -12535644 - pTR5 LTR ERV1 0 2438 744 1804 92 36 0 chr12 131746846 131747097 -12535392 + AluY SINE Alu 37 296 -15 846 125 0 71 chr12 131747388 131747556 -12534933 + AluSg/x SINE Alu 154 309 -1 1787 153 31 7 chr12 131747566 131747860 -12534629 + AluSx SINE Alu 1 301 -11 1753 164 0 14 chr12 131747868 131748160 -12534329 + AluJo SINE Alu 1 288 -24 769 206 0 0 chr12 131748211 131748342 -12534147 + FLAM_C SINE Alu 1 131 -2 2171 97 7 3 chr12 131748353 131748653 -12533836 + AluSp SINE Alu 1 301 -12 2255 78 0 44 chr12 131748742 131749061 -12533428 + AluSg SINE Alu 6 310 0 1803 153 24 0 chr12 131749414 131749708 -12532781 - AluJo SINE Alu -11 301 1 23 0 0 0 chr12 131749710 131749733 -12532756 + AT_rich Low_complexity Low_complexity 1 23 0 1229 83 0 0 chr12 131750551 131750708 -12531781 - AluSg/x SINE Alu -22 290 134 2064 138 0 0 chr12 131750708 131751019 -12531470 - AluSx SINE Alu -1 311 1 210 313 0 0 chr12 131751307 131751371 -12531118 - MIR SINE MIR -39 223 160 1222 144 14 10 chr12 131751372 131751580 -12530909 - AluSg/x SINE Alu -18 292 84 1937 67 4 15 chr12 131751628 131751800 -12530689 - AluY SINE Alu -7 304 135 2247 82 7 0 chr12 131751800 131752092 -12530397 - AluSp SINE Alu -19 294 1 1937 67 4 15 chr12 131752092 131752186 -12530303 - AluY SINE Alu -176 135 41 1865 138 44 0 chr12 131752450 131752746 -12529743 + AluJo SINE Alu 1 309 -3 438 154 0 39 chr12 131753188 131753266 -12529223 - AluJ/FRAM SINE Alu -10 302 228 404 190 0 13 chr12 131753265 131753344 -12529145 - AluJo/FLAM SINE Alu -187 125 48 * 758 193 88 84 chr12 131753353 131753444 -12529045 - L1MB5 LINE L1 0 6174 6085 1724 122 77 28 chr12 131753444 131753611 -12528878 - AluSx SINE Alu -12 300 112 2465 50 0 3 chr12 131753611 131753911 -12528578 - AluY SINE Alu -10 301 3 1724 122 77 28 chr12 131753911 131754029 -12528460 - AluSx SINE Alu -200 112 1 758 193 88 84 chr12 131754029 131754186 -12528303 - L1MB5 LINE L1 -89 6085 5925 1200 176 0 5 chr12 131754197 131754402 -12528087 - AluJo SINE Alu -15 297 94 1160 199 94 38 chr12 131754402 131754668 -12527821 + AluJo SINE Alu 17 297 -15 323 243 59 52 chr12 131754712 131754848 -12527641 + MIR3 SINE MIR 14 150 -58 1830 158 7 0 chr12 131755136 131755255 -12527234 + AluJo SINE Alu 1 118 -194 216 0 0 0 chr12 131755255 131755279 -12527210 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1830 158 7 0 chr12 131755279 131755463 -12527026 + AluJo SINE Alu 118 306 -6 2100 121 3 10 chr12 131755472 131755779 -12526710 + AluSq SINE Alu 3 307 -6 1302 175 63 79 chr12 131755805 131756108 -12526381 - AluJo SINE Alu -4 298 1 1955 124 3 0 chr12 131756118 131756401 -12526088 - AluSx SINE Alu -21 291 8 541 264 87 44 chr12 131756703 131756919 -12525570 - MLT1C LTR MaLR -18 487 220 1020 148 0 23 chr12 131756934 131757110 -12525379 - AluSg/x SINE Alu -1 309 138 320 263 68 8 chr12 131757111 131757229 -12525260 - MLT1C LTR MaLR -233 234 110 1958 138 0 0 chr12 131757236 131757527 -12524962 - AluSx SINE Alu -21 291 1 27 0 0 0 chr12 131758358 131758385 -12524104 + AT_rich Low_complexity Low_complexity 1 27 0 1960 139 3 7 chr12 131758385 131758680 -12523809 - AluSx SINE Alu -18 294 1 1214 165 0 14 chr12 131758681 131758893 -12523596 - AluJo SINE Alu -17 295 87 2182 106 0 10 chr12 131758925 131759227 -12523262 + AluSx SINE Alu 1 299 -13 1950 139 10 0 chr12 131759235 131759538 -12522951 + AluSx SINE Alu 1 306 -6 201 242 136 0 chr12 131759541 131759607 -12522882 - L2 LINE L2 -12 3260 3186 40 91 0 0 chr12 131760871 131760981 -12521508 + GC_rich Low_complexity Low_complexity 1 110 0 23 20 0 61 chr12 131761010 131761059 -12521430 + GC_rich Low_complexity Low_complexity 1 46 0 30 83 0 0 chr12 131761092 131761164 -12521325 + GC_rich Low_complexity Low_complexity 1 72 0 21 36 0 0 chr12 131761490 131761518 -12520971 + GC_rich Low_complexity Low_complexity 1 28 0 47 52 0 43 chr12 131761613 131761729 -12520760 + GC_rich Low_complexity Low_complexity 1 111 0 26 0 0 0 chr12 131761879 131761905 -12520584 + GC_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr12 131761978 131762002 -12520487 + (CGG)n Simple_repeat Simple_repeat 1 24 0 2249 91 0 19 chr12 131762982 131763300 -12519189 + AluSq SINE Alu 1 312 -1 1840 147 3 29 chr12 131764268 131764574 -12517915 - AluJo SINE Alu -14 298 1 1896 136 3 7 chr12 131764637 131764938 -12517551 + AluSq SINE Alu 1 300 -13 1662 164 7 7 chr12 131764940 131765238 -12517251 + AluJo SINE Alu 1 298 -14 2728 176 25 4 chr12 131766225 131766755 -12515734 + L1MB7 LINE L1 5533 6073 -111 213 283 29 29 chr12 131766970 131767108 -12515381 + (CCCCG)n Simple_repeat Simple_repeat 1 138 0 * 234 266 32 24 chr12 131767023 131767147 -12515342 + C-rich Low_complexity Low_complexity 6 130 0 677 290 18 25 chr12 131767364 131767643 -12514846 + AluSg1 SINE Alu 14 290 -19 764 161 0 22 chr12 131767709 131767725 -12514764 + L1MB3 LINE L1 6041 6056 -127 931 153 0 0 chr12 131767725 131767856 -12514633 + FLAM_C SINE Alu 1 131 -2 764 161 0 22 chr12 131767856 131767976 -12514513 + L1MB3 LINE L1 6056 6174 -9 755 241 175 55 chr12 131767991 131768798 -12513691 + HAL1 LINE L1 148 856 -1651 504 147 0 0 chr12 131768798 131768873 -12513616 + MER116 DNA Mariner 2 76 -4 755 241 175 55 chr12 131768873 131768913 -12513576 + HAL1 LINE L1 856 890 -1617 2550 37 0 0 chr12 131768913 131769210 -12513279 + AluY SINE Alu 1 297 -14 755 241 175 55 chr12 131769210 131770339 -12512150 + HAL1 LINE L1 890 2437 -70 2213 103 0 0 chr12 131770645 131770946 -12511543 + AluSx SINE Alu 1 301 -11 2024 87 17 7 chr12 131772054 131772353 -12510136 - AluSq SINE Alu -11 302 1 380 216 41 0 chr12 131772890 131772987 -12509502 + Charlie8 DNA MER1_type 91 191 -2226 1937 99 44 0 chr12 131774127 131774399 -12508090 - AluSx SINE Alu -28 284 1 232 268 150 15 chr12 131777365 131777568 -12504921 + MIR SINE MIR 4 242 -20 623 258 117 24 chr12 131778234 131778482 -12504007 - L2 LINE L2 -2 3311 3041 5036 197 69 59 chr12 131778565 131778793 -12503696 + Charlie1a DNA MER1_type 5 229 -2532 2314 45 7 10 chr12 131778793 131779085 -12503404 + AluY SINE Alu 1 291 -20 5036 197 69 59 chr12 131779085 131779920 -12502569 + Charlie1a DNA MER1_type 229 1054 -1707 2133 93 23 10 chr12 131779920 131780221 -12502268 - AluSg SINE Alu -4 306 2 5036 197 69 59 chr12 131780221 131780335 -12502154 + Charlie1a DNA MER1_type 1054 1165 -1596 1788 124 43 13 chr12 131780335 131780634 -12501855 - AluSx SINE Alu -4 308 1 5036 197 69 59 chr12 131780634 131780714 -12501775 + Charlie1a DNA MER1_type 1165 1243 -1518 1962 155 0 3 chr12 131780714 131781023 -12501466 + AluJb SINE Alu 1 308 -4 5036 197 69 59 chr12 131781023 131781193 -12501296 + Charlie1a DNA MER1_type 1243 1450 -5 56 29 0 0 chr12 131781847 131781917 -12500572 + GC_rich Low_complexity Low_complexity 1 70 0 492 200 0 0 chr12 131781941 131782106 -12500383 + G-rich Low_complexity Low_complexity 1 165 0 1505 154 23 8 chr12 131782244 131782335 -12500154 + AluJb SINE Alu 33 121 -191 267 54 0 0 chr12 131782335 131782372 -12500117 + (CA)n Simple_repeat Simple_repeat 2 38 0 1505 154 23 8 chr12 131782372 131782539 -12499950 + AluJb SINE Alu 121 295 -17 2371 76 0 0 chr12 131782572 131782873 -12499616 + AluY SINE Alu 1 301 -10 694 208 0 0 chr12 131782875 131783000 -12499489 + L1MB2 LINE L1 5521 5645 -526 403 152 0 51 chr12 131783002 131783081 -12499408 + Tigger2 DNA MER2_type 2 76 -2642 * 2560 105 65 19 chr12 131783053 131783483 -12499006 + Tigger2 DNA MER2_type 2266 2715 -3 2470 170 48 31 chr12 131783484 131783622 -12498867 + L1MB2 LINE L1 5643 5777 -394 2136 124 0 0 chr12 131783622 131783921 -12498568 + AluSx SINE Alu 1 299 -13 2470 170 48 31 chr12 131783921 131784301 -12498188 + L1MB2 LINE L1 5777 6170 -1 1242 231 84 43 chr12 131785406 131785847 -12496642 + MLT1C LTR MaLR 1 459 -8 328 122 24 12 chr12 131786495 131786577 -12495912 + C-rich Low_complexity Low_complexity 2 84 0 23 54 0 0 chr12 131786637 131786674 -12495815 + GC_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr12 131787856 131787886 -12494603 + AT_rich Low_complexity Low_complexity 1 30 0 183 139 0 0 chr12 131788332 131788368 -12494121 + (A)n Simple_repeat Simple_repeat 1 36 0 2205 102 0 10 chr12 131788923 131789236 -12493253 - AluSx SINE Alu -2 310 1 2267 74 0 24 chr12 131789360 131789657 -12492832 - AluSq SINE Alu -23 290 1 2011 141 0 0 chr12 131790408 131790705 -12491784 + AluSx SINE Alu 1 297 -15 272 255 128 39 chr12 131790939 131791041 -12491448 - MIR3 SINE MIR -11 197 87 291 305 141 0 chr12 131791094 131791222 -12491267 - MIR SINE MIR -3 259 114 1841 108 45 4 chr12 131792456 131792724 -12489765 + AluSx SINE Alu 12 290 -22 2009 129 13 3 chr12 131793702 131794004 -12488485 + AluSq SINE Alu 1 305 -8 2010 131 0 6 chr12 131794029 131794342 -12488147 + AluSq SINE Alu 1 311 -2 2626 165 26 22 chr12 131794361 131794825 -12487664 + L1MB5 LINE L1 5676 6144 -30 2234 91 0 10 chr12 131794825 131795122 -12487367 + AluY SINE Alu 1 294 -17 2626 165 26 22 chr12 131795122 131795154 -12487335 + L1MB5 LINE L1 6144 6174 0 1599 139 133 10 chr12 131795161 131795264 -12487225 + MER7A DNA MER2_type 1 90 -2948 1887 157 3 13 chr12 131795264 131795570 -12486919 + AluJb SINE Alu 1 303 -9 1599 139 133 10 chr12 131795570 131795775 -12486714 + MER7A DNA MER2_type 90 345 -1 405 0 0 0 chr12 131795776 131795821 -12486668 + (TG)n Simple_repeat Simple_repeat 2 46 0 1671 179 7 26 chr12 131795900 131796208 -12486281 + AluJb SINE Alu 1 302 -10 815 146 0 0 chr12 131796208 131796331 -12486158 + FLAM_C SINE Alu 4 126 -7 1661 173 15 7 chr12 131796475 131796607 -12485882 + AluJo SINE Alu 1 131 -181 2364 102 0 0 chr12 131796607 131796902 -12485587 + AluSq SINE Alu 2 296 -17 1661 173 15 7 chr12 131796902 131797041 -12485448 + AluJo SINE Alu 131 274 -38 185 94 31 0 chr12 131797305 131797337 -12485152 + CT-rich Low_complexity Low_complexity 4 36 0 241 321 84 19 chr12 131797443 131797658 -12484831 + L1MC5 LINE L1 6963 7191 -770 950 183 20 30 chr12 131797662 131797864 -12484625 - AluJo SINE Alu -11 301 102 1018 175 6 0 chr12 131797983 131798149 -12484340 - FRAM SINE Alu -17 159 1 2257 134 0 10 chr12 131798155 131798469 -12484020 - AluSq SINE Alu 0 313 3 958 176 172 43 chr12 131798511 131798767 -12483722 - AluJo SINE Alu -12 290 2 847 150 33 39 chr12 131798775 131798955 -12483534 - L1PA15 LINE L1 -5 6160 5982 2559 64 0 0 chr12 131798955 131799252 -12483237 - AluY SINE Alu -14 297 1 1773 159 25 3 chr12 131799285 131799452 -12483037 - AluJb SINE Alu -17 295 118 267 54 0 0 chr12 131799452 131799489 -12483000 + (TG)n Simple_repeat Simple_repeat 2 38 0 1773 159 25 3 chr12 131799489 131799604 -12482885 - AluJb SINE Alu -194 118 7 2222 121 7 0 chr12 131800192 131800499 -12481990 - AluSg SINE Alu -1 309 1 233 271 71 24 chr12 131800691 131800776 -12481713 - L2 LINE L2 -1 3271 3183 2259 104 10 0 chr12 131800783 131801080 -12481409 + AluSx SINE Alu 1 300 -12 536 90 0 34 chr12 131801100 131801189 -12481300 + AluSg/x SINE Alu 218 303 -6 1948 166 0 13 chr12 131801290 131801604 -12480885 + AluJb SINE Alu 1 310 -2 210 37 0 0 chr12 131801616 131801643 -12480846 + (CA)n Simple_repeat Simple_repeat 2 28 0 1110 232 89 41 chr12 131801695 131802109 -12480380 - LTR33 LTR ERVL -4 517 84 2185 130 0 16 chr12 131802435 131802751 -12479738 + AluJb SINE Alu 1 311 -1 899 181 76 78 chr12 131802794 131803104 -12479385 + MLT1B LTR MaLR 2 390 0 275 333 105 14 chr12 131803277 131803487 -12479002 + L2 LINE L2 2446 2674 -640 623 212 5 101 chr12 131803504 131803682 -12478807 + L1MB3 LINE L1 5978 6133 -50 2334 108 0 0 chr12 131803682 131803977 -12478512 - AluSx SINE Alu -17 295 1 623 212 5 101 chr12 131803977 131804015 -12478474 + L1MB3 LINE L1 6133 6173 -10 1647 91 18 0 chr12 131804015 131804235 -12478254 - AluSq SINE Alu -17 296 73 1017 108 0 0 chr12 131804248 131804378 -12478111 - AluSg1 SINE Alu -178 131 2 1887 163 3 3 chr12 131804405 131804699 -12477790 + AluSx SINE Alu 1 294 -18 655 200 0 0 chr12 131804726 131804841 -12477648 + FRAM SINE Alu 1 114 -62 1395 158 0 9 chr12 131804841 131805096 -12477393 + AluJo SINE Alu 85 337 0 1983 127 41 3 chr12 131805691 131805983 -12476506 - AluSx SINE Alu -9 303 1 350 272 118 15 chr12 131806324 131806460 -12476029 - MIR SINE MIR -81 181 32 2138 116 0 23 chr12 131806528 131806690 -12475799 - AluSx SINE Alu -18 294 130 180 97 0 0 chr12 131806690 131806721 -12475768 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2161 94 7 17 chr12 131806721 131807008 -12475481 - AluSp SINE Alu -29 284 1 2138 116 0 23 chr12 131807008 131807145 -12475344 - AluSx SINE Alu -180 132 1 235 0 0 54 chr12 131807149 131807186 -12475303 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 823 178 0 0 chr12 131807186 131807332 -12475157 - FRAM SINE Alu -18 148 3 2144 138 0 0 chr12 131807344 131807640 -12474849 - AluSx SINE Alu -16 296 1 352 233 25 33 chr12 131807640 131807760 -12474729 + MER5A DNA MER1_type 48 166 -23 296 317 17 17 chr12 131807655 131807775 -12474714 - MER5A DNA MER1_type -50 139 20 * 23 0 0 0 chr12 131809388 131809411 -12473078 + AT_rich Low_complexity Low_complexity 1 23 0 2364 89 3 7 chr12 131809411 131809713 -12472776 + AluSx SINE Alu 1 301 -11 552 172 19 57 chr12 131809751 131809781 -12472708 - Charlie5 DNA MER1_type -1 2623 2593 1758 176 20 7 chr12 131809781 131810083 -12472406 + AluJb SINE Alu 1 306 -6 552 172 19 57 chr12 131810083 131810209 -12472280 - Charlie5 DNA MER1_type -31 2593 2473 1430 121 5 0 chr12 131810248 131810438 -12472051 - AluSg/x SINE Alu -52 260 70 1458 183 21 87 chr12 131810978 131811148 -12471341 + L1MB2 LINE L1 5161 5341 -830 2047 133 0 10 chr12 131811148 131811441 -12471048 + AluSx SINE Alu 23 312 0 1458 183 21 87 chr12 131811441 131811678 -12470811 + L1MB2 LINE L1 5341 5511 -660 2352 80 7 7 chr12 131811678 131811978 -12470511 + AluY SINE Alu 4 303 -8 1458 183 21 87 chr12 131811978 131812105 -12470384 + L1MB2 LINE L1 5511 5645 -526 401 157 0 14 chr12 131812107 131812177 -12470312 - MER8 DNA MER2_type -1 238 170 * 2583 106 65 19 chr12 131812158 131812591 -12469898 + Tigger2 DNA MER2_type 2266 2718 0 2221 178 48 33 chr12 131812591 131812728 -12469761 + L1MB2 LINE L1 5645 5778 -393 2266 124 0 0 chr12 131812728 131813027 -12469462 + AluSx SINE Alu 1 299 -13 2221 178 48 33 chr12 131813027 131813407 -12469082 + L1MB2 LINE L1 5778 6170 -1 1178 231 84 43 chr12 131814510 131814951 -12467538 + MLT1C LTR MaLR 1 459 -8 255 364 98 21 chr12 131815093 131815379 -12467110 + L2 LINE L2 2945 3252 -20 1780 163 31 3 chr12 131816529 131816823 -12465666 + AluJo SINE Alu 2 303 -9 253 254 0 0 chr12 131816968 131817023 -12465466 - MER46C DNA MER2_type -283 55 1 1957 163 0 0 chr12 131818346 131818660 -12463829 - AluSx SINE Alu 0 314 1 348 24 0 0 chr12 131818834 131818875 -12463614 + (CA)n Simple_repeat Simple_repeat 2 42 0 3905 185 26 39 chr12 131819078 131819199 -12463290 + L1M4 LINE L1 4493 4614 -1532 1620 193 26 7 chr12 131819199 131819504 -12462985 + AluJo SINE Alu 1 311 -1 3905 185 26 39 chr12 131819504 131819622 -12462867 + L1M4 LINE L1 4614 4732 -1414 2112 121 3 0 chr12 131819622 131819904 -12462585 + AluSq SINE Alu 5 287 -26 2323 108 0 0 chr12 131819904 131820201 -12462288 + AluSc SINE Alu 1 297 -12 3905 185 26 39 chr12 131820201 131820648 -12461841 + L1M4 LINE L1 4731 5168 -978 2324 101 3 0 chr12 131820648 131820946 -12461543 + AluSp SINE Alu 2 300 -13 3905 185 26 39 chr12 131820946 131821179 -12461310 + L1M4 LINE L1 5168 5403 -743 481 119 71 0 chr12 131821424 131821508 -12460981 + AluSc SINE Alu 177 266 -43 1682 159 7 37 chr12 131821510 131821806 -12460683 - AluJb SINE Alu -25 287 1 706 202 0 0 chr12 131821862 131821991 -12460498 - FLAM_C SINE Alu -10 133 5 573 301 26 0 chr12 131821996 131822149 -12460340 - MIR SINE MIR -85 177 21 1796 174 3 40 chr12 131823529 131823851 -12458638 - AluJo SINE Alu -2 310 1 418 321 42 6 chr12 131823926 131824094 -12458395 - MIR SINE MIR 0 262 89 370 255 43 0 chr12 131824292 131824386 -12458103 + MIR SINE MIR 99 196 -66 192 40 0 0 chr12 131824490 131824515 -12457974 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 2020 129 11 0 chr12 131824521 131824800 -12457689 - AluSx SINE Alu -30 282 1 208 286 18 0 chr12 131824891 131824947 -12457542 + GA-rich Low_complexity Low_complexity 4 60 0 1651 183 3 26 chr12 131825637 131825808 -12456681 - AluJo SINE Alu -8 304 142 2112 135 3 0 chr12 131825808 131826104 -12456385 - AluSx SINE Alu -15 297 1 1651 183 3 26 chr12 131826104 131826238 -12456251 - AluJo SINE Alu -170 142 6 1809 163 17 0 chr12 131827137 131827425 -12455064 - AluJo SINE Alu -9 303 11 268 81 0 0 chr12 131827450 131827487 -12455002 - Alu SINE Alu -253 47 11 261 108 0 0 chr12 131827481 131827518 -12454971 - Alu SINE Alu -253 47 11 * 247 108 0 0 chr12 131827512 131827549 -12454940 - Alu SINE Alu -252 47 11 * 263 108 0 0 chr12 131827543 131827580 -12454909 - Alu SINE Alu -255 47 11 * 288 122 0 0 chr12 131827574 131827615 -12454874 - Alu SINE Alu -255 47 7 236 318 0 0 chr12 131827869 131827935 -12454554 + L2 LINE L2 3230 3295 -18 813 134 0 0 chr12 131827943 131828062 -12454427 - AluSg/x SINE Alu -7 303 185 189 74 0 0 chr12 131828281 131828308 -12454181 + (TCC)n Simple_repeat Simple_repeat 3 29 0 738 185 154 36 chr12 131828636 131828831 -12453658 - AluSg/x SINE Alu -14 296 79 481 236 14 45 chr12 131828856 131828867 -12453622 + L1MB8 LINE L1 5879 5889 -289 2015 154 0 0 chr12 131828867 131829201 -12453288 + AluJb SINE Alu 1 334 0 481 236 14 45 chr12 131829201 131829354 -12453135 + L1MB8 LINE L1 5889 6037 -141 2040 113 11 3 chr12 131829355 131829637 -12452852 - AluSx SINE Alu 0 312 29 2389 99 3 0 chr12 131829638 131829940 -12452549 - AluSx SINE Alu -7 305 3 275 108 0 0 chr12 131829942 131829979 -12452510 - AluSx SINE Alu -264 37 1 643 201 20 7 chr12 131829981 131830130 -12452359 + L1MB8 LINE L1 6028 6178 0 1227 84 11 28 chr12 131832503 131832681 -12449808 - AluJo SINE Alu -44 268 94 295 181 0 104 chr12 131833065 131833258 -12449231 + C-rich Low_complexity Low_complexity 2 174 0 2220 155 48 10 chr12 131834044 131834456 -12448033 - MSTA LTR MaLR 0 428 1 365 294 35 46 chr12 131835328 131835511 -12446978 - MIR SINE MIR -50 212 34 364 258 11 0 chr12 131835596 131835689 -12446800 - MER103 DNA DNA -71 95 2 447 316 32 21 chr12 131836741 131836928 -12445561 - MIR SINE MIR -12 250 62 204 268 13 6 chr12 131836915 131837000 -12445489 - MIR SINE MIR -17 191 105 * 1171 122 18 0 chr12 131837488 131837652 -12444837 - AluSg/x SINE Alu -9 303 137 2385 76 0 0 chr12 131837691 131837982 -12444507 + AluY SINE Alu 5 295 -16 305 193 176 25 chr12 131838030 131838149 -12444340 + L1ME4a LINE L1 5985 6121 0 709 254 10 19 chr12 131838677 131838886 -12443603 + AluJo SINE Alu 4 210 -102 630 318 116 12 chr12 131839766 131840093 -12442396 + LTR16A LTR ERVL 88 448 -2 632 142 0 0 chr12 131840924 131841030 -12441459 + AluSp/q SINE Alu 200 305 -8 501 206 19 9 chr12 131841319 131841426 -12441063 - L2 LINE L2 -3 3310 3203 1725 163 13 30 chr12 131841455 131841755 -12440734 + AluJb SINE Alu 1 295 -17 800 185 3 25 chr12 131841759 131842076 -12440413 + GA-rich Low_complexity Low_complexity 1 310 0 534 169 34 8 chr12 131842080 131842198 -12440291 + AluSq/x SINE Alu 5 125 -187 368 284 47 20 chr12 131842342 131842490 -12439999 + MIR SINE MIR 2 153 -109 2115 116 7 17 chr12 131842777 131843070 -12439419 - AluSx SINE Alu -18 294 5 1634 167 137 62 chr12 131843672 131843868 -12438621 + MLT1C LTR MaLR 3 183 -284 2707 61 0 0 chr12 131843868 131844178 -12438311 + AluSx SINE Alu 1 310 -2 1634 167 137 62 chr12 131844178 131844413 -12438076 + MLT1C LTR MaLR 183 466 -1 625 200 0 16 chr12 131844473 131844632 -12437857 + FLAM_A SINE Alu 2 133 0 2347 102 0 3 chr12 131844744 131845048 -12437441 + AluSx SINE Alu 1 303 -9 2060 132 0 16 chr12 132045390 132045701 -12236788 - AluSc SINE Alu -1 308 3 912 78 28 21 chr12 132045713 132045854 -12236635 - AluYb8 SINE Alu -3 315 174 2350 64 0 0 chr12 132045885 132046198 -12236291 + AluY SINE Alu 1 313 0 2428 93 7 3 chr12 132046203 132046513 -12235976 + AluSx SINE Alu 1 311 -1 904 156 0 0 chr12 132046689 132046824 -12235665 + AluJb SINE Alu 147 281 -31 1667 149 15 26 chr12 132046862 132047130 -12235359 - AluSx SINE Alu -30 282 18 270 279 55 71 chr12 132047166 132047349 -12235140 - MER102a DNA MER1_type 0 330 151 368 83 33 0 chr12 132047362 132047422 -12235067 + (TATG)n Simple_repeat Simple_repeat 2 63 0 2055 132 0 7 chr12 132047422 132047709 -12234780 - AluSq SINE Alu -28 285 1 469 222 206 74 chr12 132047753 132047869 -12234620 + MIR SINE MIR 19 118 -144 2569 56 0 10 chr12 132047869 132048174 -12234315 + AluY SINE Alu 1 302 -9 469 222 206 74 chr12 132048174 132048246 -12234243 + MIR SINE MIR 118 232 -30 1939 123 18 0 chr12 132048376 132048661 -12233828 - AluY SINE Alu -21 290 1 1520 106 10 0 chr12 132049089 132049297 -12233192 - AluSg/x SINE Alu -12 300 91 2004 121 3 48 chr12 132049470 132049784 -12232705 + AluSx SINE Alu 1 300 -12 2170 82 54 4 chr12 132049784 132050063 -12232426 + AluY SINE Alu 1 293 -18 391 215 172 0 chr12 132050063 132050156 -12232333 + L1MC4 LINE L1 7591 7699 -343 2585 59 10 0 chr12 132050160 132050466 -12232023 + AluSp SINE Alu 1 309 -4 702 142 8 17 chr12 132050489 132050609 -12231880 + FLAM_C SINE Alu 5 123 -20 772 158 59 89 chr12 132050611 132050670 -12231819 + L1MB7 LINE L1 5891 5950 -234 2405 71 7 16 chr12 132050670 132050978 -12231511 - AluY SINE Alu -6 305 1 772 158 59 89 chr12 132050978 132051121 -12231368 + L1MB7 LINE L1 5950 6087 -97 1255 78 150 0 chr12 132051221 132051412 -12231077 + AluSg/x SINE Alu 88 303 0 388 171 0 13 chr12 132051412 132051488 -12231001 - L1MB8 LINE L1 -57 6121 6047 * 418 183 16 20 chr12 132051466 132051578 -12230911 - L1MB8 LINE L1 -13 6161 6047 207 0 0 0 chr12 132051578 132051601 -12230888 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 341 197 0 13 chr12 132051601 132051677 -12230812 - L1MB8 LINE L1 -57 6121 6047 * 198 0 0 0 chr12 132051677 132051699 -12230790 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1473 201 52 69 chr12 132051699 132051941 -12230548 - L1MB7 LINE L1 -59 6125 5880 2355 80 3 10 chr12 132051941 132052243 -12230246 - AluSq SINE Alu -13 300 1 1473 201 52 69 chr12 132052243 132052302 -12230187 - L1MB7 LINE L1 -304 5880 5822 2049 135 7 3 chr12 132052302 132052598 -12229891 + AluSx SINE Alu 1 297 -15 2391 75 3 16 chr12 132052598 132052904 -12229585 + AluY SINE Alu 1 302 -9 1473 201 52 69 chr12 132052599 132053017 -12229472 - L1MB7 LINE L1 -362 5822 5715 2082 108 24 0 chr12 132053022 132053309 -12229180 + AluSx SINE Alu 13 306 -6 260 43 22 0 chr12 132054345 132054391 -12228098 + AluSp/q SINE Alu 257 303 0 381 148 0 119 chr12 132054552 132054593 -12227896 - L1ME3A LINE L1 -2 6168 6124 1643 141 23 56 chr12 132054593 132054899 -12227590 + AluJo SINE Alu 1 296 -16 1554 214 0 10 chr12 132054906 132055205 -12227284 + AluJb SINE Alu 1 296 -16 381 148 0 119 chr12 132055205 132055256 -12227233 - L1ME3A LINE L1 -52 6118 6080 2609 62 0 0 chr12 132055428 132055735 -12226754 + AluSg SINE Alu 1 307 -3 509 146 0 0 chr12 132055762 132055884 -12226605 - FRAM SINE Alu 0 192 71 1887 177 0 0 chr12 132055899 132056208 -12226281 - AluJb SINE Alu 0 309 1 473 200 147 13 chr12 132056217 132056367 -12226122 - MER3 DNA MER1_type -86 123 1 2016 123 7 29 chr12 132056472 132056780 -12225709 + AluSx SINE Alu 1 301 -11 255 328 80 38 chr12 132056871 132057133 -12225356 + L1ME LINE L1 5365 5637 -484 1062 75 0 0 chr12 132057194 132057328 -12225161 - AluSg/x SINE Alu -5 307 174 201 333 0 12 chr12 132057336 132057420 -12225069 - MIR SINE MIR -59 203 121 1028 106 14 0 chr12 132057421 132057562 -12224927 + AluSq/x SINE Alu 3 145 -167 2011 126 0 0 chr12 132057562 132057833 -12224656 + AluSx SINE Alu 42 312 0 203 314 0 23 chr12 132057836 132057922 -12224567 - MIR SINE MIR -133 129 46 485 187 55 0 chr12 132057991 132058082 -12224407 + FLAM_C SINE Alu 25 120 -23 1148 179 14 79 chr12 132058095 132058385 -12224104 + AluJo SINE Alu 39 309 -3 2382 82 6 16 chr12 132058402 132058717 -12223772 + AluSq SINE Alu 1 312 -1 190 111 0 0 chr12 132058851 132058878 -12223611 + L2 LINE L2 3272 3298 -15 207 279 8 107 chr12 132059130 132059184 -12223305 + MIR SINE MIR 113 150 -112 1830 145 10 20 chr12 132059184 132059488 -12223001 - AluSx SINE Alu -11 301 1 207 279 8 107 chr12 132059488 132059555 -12222934 + MIR SINE MIR 150 222 -40 1540 187 17 27 chr12 132059591 132059890 -12222599 + AluJo SINE Alu 1 296 -16 2323 80 0 0 chr12 132059893 132060169 -12222320 + AluSx SINE Alu 1 276 -36 342 0 0 0 chr12 132060175 132060213 -12222276 + (TAA)n Simple_repeat Simple_repeat 2 39 0 750 221 55 28 chr12 132060984 132061201 -12221288 + MIR SINE MIR 40 262 0 325 275 48 88 chr12 132061772 132061973 -12220516 - L1MC/D LINE L1 -482 5639 5607 2377 77 7 7 chr12 132061973 132062270 -12220219 - AluSc SINE Alu -12 297 1 325 275 48 88 chr12 132062270 132062405 -12220084 - L1MC/D LINE L1 -514 5607 5468 2126 114 4 0 chr12 132062819 132063100 -12219389 - AluSx SINE Alu -17 295 14 230 42 271 0 chr12 132063109 132063157 -12219332 - L1MB3 LINE L1 -1 6182 6122 282 207 115 0 chr12 132063157 132063244 -12219245 - L1MB3 LINE L1 -2 6181 6085 1177 150 115 73 chr12 132063245 132063466 -12219023 - MER7A DNA MER2_type -2692 346 111 1729 133 0 12 chr12 132063466 132063722 -12218767 + AluSx SINE Alu 54 306 -6 1177 150 115 73 chr12 132063722 132063786 -12218703 - MER7A DNA MER2_type -2927 111 51 2633 134 21 88 chr12 132063810 132063992 -12218497 - L1MB3 LINE L1 -96 6087 5894 2538 74 0 0 chr12 132063992 132064290 -12218199 - AluSp SINE Alu -13 300 3 2174 116 7 16 chr12 132064291 132064601 -12217888 - AluSc SINE Alu 0 309 3 2633 134 21 88 chr12 132064601 132064687 -12217802 - L1MB3 LINE L1 -289 5894 5804 2324 109 0 0 chr12 132064687 132064989 -12217500 - AluSc SINE Alu -7 302 1 2633 134 21 88 chr12 132064989 132065170 -12217319 - L1MB3 LINE L1 -379 5804 5678 1730 152 26 0 chr12 132065170 132065440 -12217049 - AluJo SINE Alu -31 281 5 2633 134 21 88 chr12 132065440 132065553 -12216936 - L1MB3 LINE L1 -505 5678 5559 982 335 52 34 chr12 132065791 132066326 -12216163 + MLT1K LTR MaLR 10 554 -34 956 68 0 0 chr12 132066346 132066463 -12216026 + AluSq/x SINE Alu 1 117 -195 647 38 0 0 chr12 132066463 132066542 -12215947 - AluY SINE Alu -15 296 218 1900 117 4 0 chr12 132066642 132066899 -12215590 - AluSp SINE Alu -55 258 1 309 191 0 16 chr12 132066920 132066983 -12215506 + L2 LINE L2 3188 3249 -64 2318 110 0 3 chr12 132066994 132067302 -12215187 - AluSx SINE Alu -4 308 2 2322 95 3 0 chr12 132067303 132067597 -12214892 - AluY SINE Alu -16 295 1 432 0 0 0 chr12 132067620 132067668 -12214821 + (CA)n Simple_repeat Simple_repeat 2 49 0 2142 130 7 0 chr12 132067671 132067963 -12214526 - AluSq SINE Alu -19 294 1 2215 89 50 0 chr12 132067977 132068257 -12214232 - AluSx SINE Alu -18 294 1 229 343 29 9 chr12 132068484 132068589 -12213900 + MIR SINE MIR 20 126 -82 678 246 104 26 chr12 132068702 132068970 -12213519 - L2 LINE L2 -1 3312 3024 390 147 0 0 chr12 132069010 132069078 -12213411 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 2123 120 0 0 chr12 132069078 132069361 -12213128 - AluSx SINE Alu -20 292 10 474 157 0 0 chr12 132069371 132069441 -12213048 - AluS SINE Alu -241 71 2 278 286 0 0 chr12 132069442 132069498 -12212991 + L2 LINE L2 3235 3290 -23 319 87 0 0 chr12 132069499 132069545 -12212944 - FLAM SINE Alu 0 133 88 416 197 102 47 chr12 132069585 132069712 -12212777 + L2 LINE L2 3179 3312 -1 393 184 26 0 chr12 132069767 132069843 -12212646 + MLT1C LTR MaLR 61 138 -329 327 217 0 0 chr12 132069873 132069933 -12212556 - AluJb SINE Alu -21 281 222 3594 60 47 0 chr12 132069933 132070399 -12212090 - LTR14B LTR ERVK -117 491 4 1579 145 0 0 chr12 132070403 132070630 -12211859 - AluJb SINE Alu -85 227 1 723 210 71 56 chr12 132070636 132070888 -12211601 + MLT1C LTR MaLR 160 415 -52 208 139 0 28 chr12 132070888 132070924 -12211565 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 2255 108 3 13 chr12 132070925 132071231 -12211258 - AluSp SINE Alu -10 303 1 1299 185 0 0 chr12 132071234 132071445 -12211044 - AluJo SINE Alu -18 294 84 314 169 123 0 chr12 132071445 132071510 -12210979 + MLT1B LTR MaLR 318 390 0 1776 131 89 17 chr12 132071513 132071804 -12210685 + AluSx SINE Alu 1 312 0 193 317 0 50 chr12 132071829 132071949 -12210540 - L2 LINE L2 -280 3033 2920 22 0 0 0 chr12 132072501 132072523 -12209966 + GC_rich Low_complexity Low_complexity 1 22 0 1902 94 4 4 chr12 132072986 132073230 -12209259 - AluSc SINE Alu -65 244 1 1691 179 46 7 chr12 132073247 132073532 -12208957 - AluJb SINE Alu -15 297 2 231 324 36 0 chr12 132073760 132073871 -12208618 - L1ME3A LINE L1 -29 6141 6027 2231 104 18 0 chr12 132074039 132074342 -12208147 - AluSx SINE Alu 0 308 1 23 0 0 29 chr12 132074346 132074367 -12208122 + AT_rich Low_complexity Low_complexity 1 22 -11 459 0 0 0 chr12 132074367 132074418 -12208071 + (CA)n Simple_repeat Simple_repeat 2 52 0 23 0 0 29 chr12 132074418 132074430 -12208059 + AT_rich Low_complexity Low_complexity 22 33 0 961 180 48 150 chr12 132074528 132074706 -12207783 - AluJo SINE Alu -3 299 169 2055 147 0 22 chr12 132074706 132075025 -12207464 + AluSx SINE Alu 1 312 0 961 180 48 150 chr12 132075025 132075179 -12207310 - AluJo SINE Alu -133 169 1 626 178 0 0 chr12 132075330 132075448 -12207041 + FLAM_A SINE Alu 23 140 -2 2298 88 0 7 chr12 132075455 132075769 -12206720 + AluSq SINE Alu 1 312 0 1983 109 77 0 chr12 132075783 132076057 -12206432 + AluSx SINE Alu 1 295 -17 2327 101 3 3 chr12 132076058 132076356 -12206133 + AluSx SINE Alu 2 299 -13 311 264 126 0 chr12 132076701 132076788 -12205701 + L2 LINE L2 3216 3313 0 400 257 102 27 chr12 132076820 132077007 -12205482 + LTR33A LTR ERVL 14 214 -309 2665 56 0 0 chr12 132077047 132077350 -12205139 - AluY SINE Alu -8 303 1 2042 141 0 3 chr12 132077379 132077670 -12204819 - AluJb SINE Alu -22 290 1 2354 221 93 12 chr12 132077682 132078242 -12204247 - MLT2F LTR ERVL -53 610 6 1041 131 87 57 chr12 132078297 132078362 -12204127 - LTR47A LTR ERVL -23 429 367 1789 179 3 7 chr12 132078362 132078659 -12203830 - AluJo SINE Alu -16 296 1 1041 131 87 57 chr12 132078659 132078960 -12203529 - LTR47A LTR ERVL -85 367 1 604 228 239 8 chr12 132078970 132079229 -12203260 - MLT1L LTR MaLR -23 592 274 1994 120 18 0 chr12 132079240 132079523 -12202966 + AluJo SINE Alu 10 297 -15 1959 122 20 33 chr12 132079543 132079846 -12202643 + AluSx SINE Alu 1 299 -13 292 276 0 0 chr12 132079846 132079904 -12202585 - MER45 DNA AcHobo -76 102 45 21 0 0 0 chr12 132080046 132080067 -12202422 + AT_rich Low_complexity Low_complexity 1 21 0 2345 70 3 30 chr12 132080070 132080372 -12202117 - AluSp SINE Alu -19 294 1 2439 80 0 13 chr12 132080374 132080676 -12201813 - AluSq SINE Alu -15 298 1 29 0 0 0 chr12 132081227 132081256 -12201233 + AT_rich Low_complexity Low_complexity 1 29 0 204 40 0 0 chr12 132081468 132081493 -12200996 + (T)n Simple_repeat Simple_repeat 1 25 0 250 263 0 0 chr12 132081498 132081555 -12200934 - LTR51 LTR ERV1 -41 630 574 2610 230 91 81 chr12 132081627 132082156 -12200333 - L1MEc LINE L1 -5246 1150 628 2140 123 0 0 chr12 132082156 132082440 -12200049 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr12 132082440 132082465 -12200024 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 1914 127 15 70 chr12 132082471 132082801 -12199688 + AluSx SINE Alu 1 312 0 2610 230 91 81 chr12 132082801 132083361 -12199128 - L1MEc LINE L1 -5772 624 42 2247 122 0 0 chr12 132083382 132083677 -12198812 + AluSx SINE Alu 1 295 -17 2440 84 3 3 chr12 132083677 132083987 -12198502 + AluY SINE Alu 1 310 -1 389 229 95 0 chr12 132083989 132084094 -12198395 + Charlie8 DNA MER1_type 162 276 -2141 2292 106 3 0 chr12 132084672 132084965 -12197524 - AluSx SINE Alu -18 294 1 285 270 117 0 chr12 132085184 132085217 -12197272 - MIR SINE MIR -23 239 211 312 27 0 0 chr12 132085217 132085254 -12197235 + (TG)n Simple_repeat Simple_repeat 2 38 0 285 270 117 0 chr12 132085254 132085331 -12197158 - MIR SINE MIR -51 211 116 1892 148 65 0 chr12 132085346 132085636 -12196853 - AluJo SINE Alu -3 309 1 298 260 195 32 chr12 132085636 132085759 -12196730 - MER5A DNA MER1_type -7 182 40 250 254 0 34 chr12 132085764 132085823 -12196666 - MIR SINE MIR -84 124 68 292 336 43 7 chr12 132085967 132086107 -12196382 + L1ME LINE L1 5677 5821 -349 1749 173 3 0 chr12 132086218 132086501 -12195988 + AluJb SINE Alu 25 308 -4 2398 104 0 0 chr12 132086506 132086804 -12195685 + AluSx SINE Alu 2 299 -13 207 261 148 9 chr12 132086830 132086945 -12195544 + MIR SINE MIR 116 246 -16 2065 133 3 3 chr12 132087053 132087347 -12195142 - AluSq SINE Alu -14 299 6 467 211 0 0 chr12 132087569 132087659 -12194830 + AluSg/x SINE Alu 209 298 -11 2323 104 0 0 chr12 132087704 132088003 -12194486 + AluSx SINE Alu 1 299 -13 2401 70 0 10 chr12 132088005 132088304 -12194185 + AluSx SINE Alu 1 296 -16 2637 44 3 0 chr12 132088304 132088600 -12193889 + AluY SINE Alu 1 297 -14 772 253 82 47 chr12 132088607 132088779 -12193710 + MER113 DNA MER1_type? 136 300 -221 2247 71 14 7 chr12 132088779 132089074 -12193415 + AluSq SINE Alu 1 297 -16 772 253 82 47 chr12 132089074 132089241 -12193248 + MER113 DNA MER1_type? 300 487 -34 1750 147 23 16 chr12 132089351 132089657 -12192832 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr12 132089792 132089815 -12192674 + GC_rich Low_complexity Low_complexity 1 23 0 2002 94 36 7 chr12 132089921 132090233 -12192256 - AluSx SINE Alu 0 320 1 749 289 22 20 chr12 132090336 132090807 -12191682 + L2 LINE L2 2706 3181 -132 256 315 22 11 chr12 132090939 132091031 -12191458 + L2 LINE L2 3208 3300 -13 201 74 0 0 chr12 132091031 132091058 -12191431 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1994 106 64 0 chr12 132091136 132091419 -12191070 + AluSq SINE Alu 1 301 -12 393 225 22 0 chr12 132091424 132091460 -12191029 + GA-rich Low_complexity Low_complexity 2 36 -106 2764 39 0 3 chr12 132091460 132091770 -12190719 + AluY SINE Alu 1 309 -2 393 225 22 0 chr12 132091770 132091871 -12190618 + GA-rich Low_complexity Low_complexity 36 142 0 305 286 92 0 chr12 132091935 132092033 -12190456 + MER91A DNA MER1_type 90 196 0 2262 109 3 3 chr12 132092247 132092559 -12189930 - AluSx SINE Alu 0 312 1 216 31 31 0 chr12 132092566 132092598 -12189891 + (TTTTA)n Simple_repeat Simple_repeat 3 170 0 2512 55 3 0 chr12 132092598 132092891 -12189598 - AluY SINE Alu -1 325 1 2448 100 0 0 chr12 132092901 132093211 -12189278 - AluSx SINE Alu -2 310 1 1613 185 10 22 chr12 132093211 132093525 -12188964 - AluJo SINE Alu -1 311 2 2423 100 0 0 chr12 132094074 132094384 -12188105 - AluSx SINE Alu -2 310 1 878 166 16 16 chr12 132094677 132094864 -12187625 - L1MB3 LINE L1 -33 6150 5964 2262 123 0 0 chr12 132094864 132095174 -12187315 - AluSq SINE Alu -3 310 1 1055 114 51 6 chr12 132095191 132095367 -12187122 - MSTA LTR MaLR -244 184 1 1844 141 3 28 chr12 132095374 132095658 -12186831 - AluJo SINE Alu -35 277 1 401 155 0 12 chr12 132096024 132096095 -12186394 - AluS SINE Alu -244 59 1 2420 98 3 0 chr12 132096157 132096462 -12186027 + AluSp SINE Alu 1 306 -7 674 191 49 12 chr12 132096462 132096624 -12185865 + MLT1G LTR MaLR 375 542 -48 263 221 0 52 chr12 132096797 132096874 -12185615 - L1MC4a LINE L1 -1903 5905 5833 2573 78 7 0 chr12 132096874 132097183 -12185306 + AluY SINE Alu 1 311 0 279 0 0 0 chr12 132097183 132097214 -12185275 + (TA)n Simple_repeat Simple_repeat 2 32 0 3441 197 31 1 chr12 132097229 132097933 -12184556 - L1MB7 LINE L1 -67 6117 5393 2166 117 7 0 chr12 132098164 132098463 -12184026 + AluSq SINE Alu 1 301 -12 2485 54 3 3 chr12 132098542 132098839 -12183650 - AluY SINE Alu -14 297 1 1990 151 3 7 chr12 132098871 132099176 -12183313 - AluJb SINE Alu -6 306 3 613 133 221 0 chr12 132099375 132099488 -12183001 - AluSg SINE Alu -171 139 2 2120 134 0 23 chr12 132099495 132099802 -12182687 - AluSx SINE Alu -12 300 1 2577 71 0 0 chr12 132099815 132100124 -12182365 - AluY SINE Alu -2 309 1 1991 194 92 43 chr12 132100133 132100362 -12182127 - L1MB8 LINE L1 -1 6177 5961 2353 101 3 0 chr12 132100362 132100668 -12181821 - AluSx SINE Alu -5 307 1 1991 194 92 43 chr12 132100668 132101014 -12181475 - L1MB8 LINE L1 -217 5961 5574 348 226 0 24 chr12 132101382 132101466 -12181023 + HAL1 LINE L1 2073 2154 -353 2500 75 0 0 chr12 132101513 132101806 -12180683 + AluY SINE Alu 1 293 -18 1003 107 0 29 chr12 132101944 132102084 -12180405 + AluSp SINE Alu 1 136 -177 2262 101 7 3 chr12 132102087 132102384 -12180105 + AluSg SINE Alu 1 298 -12 1021 198 45 22 chr12 132102391 132102613 -12179876 + AluJo SINE Alu 79 305 -7 582 280 142 1 chr12 132102741 132103012 -12179477 + LTR33 LTR ERVL 55 389 -132 1248 176 0 24 chr12 132103033 132103268 -12179221 + AluJo SINE Alu 87 316 0 2523 68 6 10 chr12 132103268 132103579 -12178910 + AluSp SINE Alu 1 310 -3 2229 122 0 0 chr12 132104017 132104313 -12178176 + AluSg SINE Alu 1 296 -14 2425 79 20 3 chr12 132104313 132104616 -12177873 + AluSc SINE Alu 1 308 -1 2026 120 17 7 chr12 132104652 132104943 -12177546 + AluSq SINE Alu 1 294 -19 1807 183 0 0 chr12 132104956 132105241 -12177248 + AluJb SINE Alu 16 300 -12 1983 147 0 17 chr12 132105690 132105990 -12176499 - AluJb SINE Alu -15 297 3 405 286 118 0 chr12 132106227 132106346 -12176143 + MIR SINE MIR 8 140 -122 253 230 74 141 chr12 132106385 132106420 -12176069 - MER119 DNA MER1_type -379 204 168 2314 86 3 20 chr12 132106420 132106721 -12175768 + AluSq SINE Alu 1 296 -17 253 230 74 141 chr12 132106721 132106820 -12175669 - MER119 DNA MER1_type -415 168 79 1772 180 18 3 chr12 132106828 132107112 -12175377 - AluJo SINE Alu -24 288 1 1740 232 89 33 chr12 132107139 132107678 -12174811 + MLT1K LTR MaLR 20 588 0 273 228 301 16 chr12 132107798 132107882 -12174607 + MIR SINE MIR 46 105 -157 219 69 0 0 chr12 132107882 132107911 -12174578 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1726 143 32 11 chr12 132107911 132108068 -12174421 - AluSx SINE Alu -27 285 118 197 33 33 0 chr12 132108068 132108098 -12174391 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1726 143 32 11 chr12 132108098 132108219 -12174270 - AluSx SINE Alu -194 118 1 273 228 301 16 chr12 132108219 132108256 -12174233 + MIR SINE MIR 104 203 -59 360 282 85 16 chr12 132108297 132108448 -12174041 - MIR3 SINE MIR -61 147 2 2451 84 3 0 chr12 132108464 132108761 -12173728 + AluSg SINE Alu 1 298 -12 527 241 172 0 chr12 132108828 132108973 -12173516 + MIR SINE MIR 7 176 -86 270 225 54 4 chr12 132108970 132109102 -12173387 + L2 LINE L2 2611 2806 -508 * 2395 110 0 0 chr12 132109558 132109868 -12172621 + AluSg SINE Alu 1 310 0 1656 162 3 49 chr12 132110095 132110403 -12172086 - AluJb SINE Alu -13 299 6 380 341 15 0 chr12 132110544 132110676 -12171813 + MIR SINE MIR 17 150 -58 2013 141 13 0 chr12 132111065 132111363 -12171126 - AluSg SINE Alu -8 302 1 2394 101 0 3 chr12 132111559 132111865 -12170624 + AluSc SINE Alu 1 305 -4 1908 111 52 4 chr12 132111874 132112171 -12170318 + AluSx SINE Alu 1 310 0 32 57 0 0 chr12 132113666 132113719 -12168770 + GC_rich Low_complexity Low_complexity 1 53 0 1041 71 0 35 chr12 132113834 132114009 -12168480 + AluY SINE Alu 146 315 0 458 200 18 13 chr12 132114011 132114126 -12168363 - MIR SINE MIR -86 122 6 313 284 11 0 chr12 132114146 132114241 -12168248 - MIR SINE MIR -110 152 57 1330 189 111 7 chr12 132115380 132115650 -12166839 + AluJo SINE Alu 1 298 -14 2481 74 3 0 chr12 132115658 132115954 -12166535 + AluSp SINE Alu 7 303 -10 253 87 43 0 chr12 132115961 132116007 -12166482 - L1MC4 LINE L1 -1 8041 7994 442 107 0 60 chr12 132116032 132116116 -12166373 - Alu SINE Alu -1 311 233 1348 193 67 21 chr12 132116117 132116267 -12166222 + MER82 DNA MER2_type 37 179 -474 192 77 0 0 chr12 132116267 132116293 -12166196 + (TA)n Simple_repeat Simple_repeat 2 27 0 1348 193 67 21 chr12 132116293 132116427 -12166062 + MER82 DNA MER2_type 179 334 -319 221 74 56 19 chr12 132116427 132116462 -12166027 + (TA)n Simple_repeat Simple_repeat 1 40 -16 1927 111 13 46 chr12 132116462 132116553 -12165936 - AluSq SINE Alu -17 296 204 2134 141 3 0 chr12 132116553 132116851 -12165638 - AluSq SINE Alu -14 299 1 1927 111 13 46 chr12 132116851 132117065 -12165424 - AluSq SINE Alu -109 204 1 221 74 56 19 chr12 132117065 132117083 -12165406 + (TA)n Simple_repeat Simple_repeat 40 56 0 1979 124 14 3 chr12 132117083 132117366 -12165123 - AluSx SINE Alu -26 286 1 912 189 18 81 chr12 132117368 132117540 -12164949 - AluJo SINE Alu -20 292 136 2566 66 3 0 chr12 132117540 132117841 -12164648 - AluSp SINE Alu -11 302 1 912 189 18 81 chr12 132117841 132117890 -12164599 - AluJo SINE Alu -176 136 85 254 65 0 0 chr12 132117890 132117921 -12164568 - AluSp/q SINE Alu -53 250 220 545 232 179 46 chr12 132117996 132118207 -12164282 - L1MC4 LINE L1 -167 7875 7693 2262 128 0 0 chr12 132118207 132118519 -12163970 - AluSx SINE Alu 0 312 1 545 232 179 46 chr12 132118519 132118553 -12163936 - L1MC4 LINE L1 -349 7693 7665 1495 179 102 0 chr12 132118553 132118827 -12163662 - AluJo SINE Alu -8 304 3 545 232 179 46 chr12 132118827 132118843 -12163646 - L1MC4 LINE L1 -377 7665 7578 2154 99 0 7 chr12 132118855 132119139 -12163350 + AluSg SINE Alu 1 282 -28 368 83 33 0 chr12 132119139 132119199 -12163290 + (CATA)n Simple_repeat Simple_repeat 2 63 0 306 294 43 65 chr12 132119212 132119396 -12163093 + MER102b DNA MER1_type 162 341 0 1953 129 22 0 chr12 132119432 132119704 -12162785 + AluJb SINE Alu 17 294 -18 2050 120 3 7 chr12 132120026 132120309 -12162180 - AluSx SINE Alu -30 282 1 2378 102 0 0 chr12 132120391 132120694 -12161795 - AluSx SINE Alu -9 303 1 289 248 55 27 chr12 132120807 132120970 -12161519 - MER5A DNA MER1_type -5 184 2 2249 90 0 52 chr12 132121182 132121492 -12160997 - AluSg SINE Alu -16 294 1 292 275 74 34 chr12 132121592 132121741 -12160748 + MIR SINE MIR 108 262 0 1224 81 0 0 chr12 132121951 132122100 -12160389 - AluSg/x SINE Alu -10 302 154 525 161 31 124 chr12 132122138 132122299 -12160190 - MER20 DNA MER1_type -73 146 1 414 278 139 7 chr12 132122326 132122477 -12160012 - MIR SINE MIR -83 179 9 2360 76 17 3 chr12 132122493 132122794 -12159695 + AluSg SINE Alu 1 305 -5 2213 113 3 0 chr12 132122794 132123085 -12159404 + AluSg SINE Alu 1 292 -18 363 250 57 65 chr12 132123085 132123209 -12159280 + MER5B DNA MER1_type 33 155 -23 837 145 8 0 chr12 132123379 132123503 -12158986 - FLAM_C SINE Alu -18 125 1 1915 107 32 0 chr12 132124167 132124456 -12158033 - AluSg1 SINE Alu 0 318 22 2219 125 0 0 chr12 132124482 132124777 -12157712 - AluSx SINE Alu -17 295 1 200 200 0 0 chr12 132125213 132125258 -12157231 + (GGCTG)n Simple_repeat Simple_repeat 4 48 0 1383 166 12 29 chr12 132125586 132125827 -12156662 + AluJb SINE Alu 27 263 -49 1755 100 0 0 chr12 132125827 132126047 -12156442 - AluSg SINE Alu -90 220 1 1459 165 7 37 chr12 132126051 132126348 -12156141 - L1MB5 LINE L1 0 6174 5887 2253 117 3 0 chr12 132126832 132127132 -12155357 - AluSx SINE Alu -7 305 5 1854 115 68 7 chr12 132127313 132127592 -12154897 + AluSx SINE Alu 1 296 -16 2067 127 7 3 chr12 132127666 132127978 -12154511 + AluSx SINE Alu 1 313 0 2358 72 7 3 chr12 132127987 132128280 -12154209 + AluY SINE Alu 1 294 -17 211 289 135 19 chr12 132128417 132128573 -12153916 + L2 LINE L2 2886 3059 -213 930 213 6 0 chr12 132128575 132128735 -12153754 - AluJo SINE Alu -25 287 127 1848 132 10 31 chr12 132128746 132129058 -12153431 - AluSx SINE Alu 0 306 1 239 152 0 43 chr12 132129207 132129253 -12153236 + MIR SINE MIR 56 99 -163 4608 78 18 41 chr12 132129255 132129823 -12152666 + LTR8 LTR ERV1 1 552 -139 2288 95 7 0 chr12 132129823 132130118 -12152371 + AluSp SINE Alu 1 297 -16 4608 78 18 41 chr12 132130118 132130230 -12152259 + LTR8 LTR ERV1 552 665 -26 1066 95 0 0 chr12 132130225 132130372 -12152117 + LTR8 LTR ERV1 429 575 -116 * 236 273 27 96 chr12 132130398 132130522 -12151967 + MIR SINE MIR 89 197 -65 2563 56 0 0 chr12 132130522 132130824 -12151665 + AluY SINE Alu 1 302 -9 236 273 27 96 chr12 132130824 132130886 -12151603 + MIR SINE MIR 197 262 0 297 75 0 0 chr12 132131360 132131400 -12151089 + (CA)n Simple_repeat Simple_repeat 2 41 0 2186 118 16 0 chr12 132131756 132132061 -12150428 - AluSx SINE Alu -2 310 1 313 234 7 71 chr12 132132074 132132183 -12150306 + L2 LINE L2 3160 3262 -51 2033 87 7 78 chr12 132132183 132132518 -12149971 + AluSq SINE Alu 1 313 0 313 234 7 71 chr12 132132518 132132547 -12149942 + L2 LINE L2 3262 3291 -22 2286 114 3 0 chr12 132132579 132132887 -12149602 - AluSg SINE Alu -1 309 1 2288 121 3 3 chr12 132132894 132133207 -12149282 - AluSp SINE Alu 0 313 1 1628 187 42 10 chr12 132133207 132133496 -12148993 - AluJo SINE Alu -13 299 2 713 154 0 37 chr12 132133496 132133615 -12148874 - FLAM_A SINE Alu -179 132 12 321 153 0 106 chr12 132133737 132133822 -12148667 + MIR SINE MIR 79 154 -108 2200 102 17 0 chr12 132133833 132134126 -12148363 + AluSx SINE Alu 1 298 -14 288 130 0 0 chr12 132134126 132134172 -12148317 + (GGGA)n Simple_repeat Simple_repeat 2 47 0 1404 128 28 8 chr12 132134172 132134423 -12148066 + L1MA9 LINE L1 5814 6069 -243 1972 146 11 0 chr12 132134423 132134710 -12147779 + AluSx SINE Alu 1 290 -22 2057 105 35 0 chr12 132134712 132134997 -12147492 + AluSg SINE Alu 1 295 -15 811 132 0 0 chr12 132134998 132135104 -12147385 + AluSq/x SINE Alu 2 107 -205 * 961 119 7 7 chr12 132135103 132135246 -12147243 + AluSc SINE Alu 160 302 -7 1039 144 7 93 chr12 132135248 132135437 -12147052 + L1MA9 LINE L1 6053 6212 -100 2376 97 3 0 chr12 132135437 132135735 -12146754 - AluSp SINE Alu -14 299 1 1039 144 7 93 chr12 132135735 132135823 -12146666 + L1MA9 LINE L1 6212 6306 -6 27 0 0 0 chr12 132135988 132136015 -12146474 + AT_rich Low_complexity Low_complexity 1 27 0 502 239 157 0 chr12 132136148 132136307 -12146182 + MLT1K LTR MaLR 66 249 -339 364 253 28 19 chr12 132136347 132136531 -12145958 + MLT1K LTR MaLR 358 587 -1 206 229 390 0 chr12 132136585 132136703 -12145786 - L2 LINE L2 -191 3081 2918 1542 93 34 0 chr12 132136714 132136919 -12145570 + AluSq SINE Alu 1 212 -101 293 237 267 0 chr12 132136940 132137075 -12145414 - MLT1K LTR MaLR -406 182 12 1636 32 0 0 chr12 132137514 132137702 -12144787 - AluY SINE Alu -2 309 122 2490 83 3 0 chr12 132137719 132138021 -12144468 + AluSg SINE Alu 1 303 -7 295 226 216 0 chr12 132138170 132138272 -12144217 - LTR33A LTR ERVL -39 484 361 601 116 0 0 chr12 132138410 132138496 -12143993 + AluSx SINE Alu 31 116 -196 712 152 8 8 chr12 132138520 132138652 -12143837 - FLAM_C SINE Alu 0 133 2 1313 149 0 5 chr12 132138654 132138849 -12143640 + AluSx SINE Alu 102 295 -17 917 238 104 54 chr12 132139066 132139283 -12143206 + L2 LINE L2 2599 2804 -509 2107 119 0 13 chr12 132139283 132139593 -12142896 - AluSq SINE Alu -5 308 3 1931 134 3 3 chr12 132139597 132139887 -12142602 - AluSx SINE Alu -22 290 1 917 238 104 54 chr12 132139887 132140045 -12142444 + L2 LINE L2 2806 3006 -307 2416 69 7 0 chr12 132140049 132140353 -12142136 - AluY SINE Alu -5 306 1 1040 116 0 14 chr12 132140354 132140500 -12141989 - AluSq/x SINE Alu -168 144 1 2209 81 7 3 chr12 132140590 132140886 -12141603 + AluSp SINE Alu 1 297 -16 870 171 0 51 chr12 132140888 132141064 -12141425 + AluJo SINE Alu 127 293 -19 231 36 0 0 chr12 132142134 132142162 -12140327 + (TA)n Simple_repeat Simple_repeat 2 29 0 255 31 0 0 chr12 132142187 132142219 -12140270 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2169 96 3 3 chr12 132142527 132142820 -12139669 - AluSc SINE Alu -16 293 1 2043 96 0 4 chr12 132142820 132143091 -12139398 - AluSg SINE Alu -18 292 23 1649 72 90 72 chr12 132143289 132143590 -12138899 - AluY SINE Alu 0 306 1 689 81 0 0 chr12 132143590 132143676 -12138813 - AluS SINE Alu -226 86 1 2037 127 17 0 chr12 132143676 132143967 -12138522 - AluSx SINE Alu -16 296 1 936 326 26 19 chr12 132143967 132144344 -12138145 - MLT1G LTR MaLR -210 380 1 2057 125 3 0 chr12 132144351 132144640 -12137849 + AluSx SINE Alu 5 294 -18 2011 157 0 0 chr12 132144852 132145157 -12137332 + AluSx SINE Alu 2 306 -6 1368 76 0 0 chr12 132145219 132145391 -12137098 + AluSc SINE Alu 118 289 -20 1504 246 68 72 chr12 132145757 132146028 -12136461 + L1MC4 LINE L1 7282 7553 -489 2243 92 13 13 chr12 132146028 132146334 -12136155 + AluSq SINE Alu 1 306 -7 1504 246 68 72 chr12 132146334 132146541 -12135948 + L1MC4 LINE L1 7553 7759 -283 2178 143 53 58 chr12 132146541 132146601 -12135888 - Tigger2a DNA MER2_type -2277 431 372 1967 146 3 0 chr12 132146601 132146895 -12135594 - AluSx SINE Alu -17 295 1 2178 143 53 58 chr12 132146895 132146919 -12135570 - Tigger2a DNA MER2_type -2336 372 349 2031 82 92 0 chr12 132146919 132147200 -12135289 - AluSq SINE Alu -5 308 2 2178 143 53 58 chr12 132147200 132147325 -12135164 - Tigger2a DNA MER2_type -2359 349 225 2235 101 3 19 chr12 132147325 132147641 -12134848 + AluSp SINE Alu 1 311 -2 2178 143 53 58 chr12 132147641 132147862 -12134627 - Tigger2a DNA MER2_type -2483 225 1 1504 246 68 72 chr12 132147862 132147983 -12134506 + L1MC4 LINE L1 7759 7879 -163 1356 243 69 0 chr12 132147983 132148300 -12134189 - MER58B DNA MER1_type -2 339 1 1504 246 68 72 chr12 132148300 132148440 -12134049 + L1MC4 LINE L1 7879 8023 -19 2125 107 4 0 chr12 132148440 132148748 -12133741 - AluSp SINE Alu 0 312 4 967 147 74 0 chr12 132148757 132148920 -12133569 - AluSg/x SINE Alu -2 310 136 23 54 0 0 chr12 132148922 132148959 -12133530 + AT_rich Low_complexity Low_complexity 1 37 0 2239 110 0 0 chr12 132149126 132149425 -12133064 - AluSx SINE Alu -13 299 1 352 203 0 0 chr12 132149627 132149691 -12132798 - U6 snRNA snRNA -42 65 2 2038 113 40 0 chr12 132149696 132149997 -12132492 - AluSq SINE Alu 0 313 1 2201 88 7 29 chr12 132150393 132150701 -12131788 + AluSg SINE Alu 1 301 -9 551 241 142 17 chr12 132150902 132151134 -12131355 - MLT1K LTR MaLR -20 568 308 1122 142 0 11 chr12 132151171 132151347 -12131142 - AluSg/x SINE Alu -2 310 137 246 330 21 0 chr12 132151348 132151442 -12131047 - MLT1K LTR MaLR -295 293 198 235 226 138 14 chr12 132151810 132151894 -12130595 - MIR SINE MIR -62 146 58 600 159 146 0 chr12 132152130 132152281 -12130208 - MER20 DNA MER1_type -11 208 36 2165 111 0 16 chr12 132152477 132152509 -12129980 - AluSx SINE Alu -1 311 280 216 0 0 0 chr12 132152509 132152533 -12129956 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 2165 111 0 16 chr12 132152533 132152816 -12129673 - AluSx SINE Alu -32 280 1 961 157 7 0 chr12 132152820 132152967 -12129522 - AluJb SINE Alu -23 289 142 2022 125 4 0 chr12 132152970 132153285 -12129204 - AluSx SINE Alu 0 316 1 2341 78 3 0 chr12 132153315 132153611 -12128878 - AluSp SINE Alu -16 297 1 786 130 0 0 chr12 132153631 132153739 -12128750 - FLAM_C SINE Alu -17 126 19 2243 83 0 13 chr12 132153797 132154121 -12128368 + AluY SINE Alu 1 311 0 513 304 35 30 chr12 132154143 132154344 -12128145 - MIR SINE MIR -18 244 43 1214 114 0 0 chr12 132155053 132155220 -12127269 - AluSg/x SINE Alu -9 301 135 303 200 0 0 chr12 132155220 132155275 -12127214 - Alu SINE Alu -245 55 1 1877 98 7 69 chr12 132155275 132155448 -12127041 - AluSx SINE Alu -5 307 160 2323 81 7 0 chr12 132155448 132155744 -12126745 - AluSp SINE Alu -15 298 1 1877 98 7 69 chr12 132155744 132155876 -12126613 - AluSx SINE Alu -152 160 21 2055 100 10 14 chr12 132155915 132156206 -12126283 - AluSx SINE Alu -2 310 21 23 54 0 0 chr12 132156217 132156254 -12126235 + AT_rich Low_complexity Low_complexity 1 37 0 2668 6 0 43 chr12 132156258 132156605 -12125884 - AluY SINE Alu 0 333 1 1855 165 0 0 chr12 132156611 132156902 -12125587 - AluJo SINE Alu -21 291 1 896 122 0 0 chr12 132156921 132157052 -12125437 - FLAM_C SINE Alu -12 131 1 323 272 96 40 chr12 132157139 132157206 -12125283 - MIR SINE MIR -14 248 186 2176 101 23 13 chr12 132157206 132157512 -12124977 - AluSx SINE Alu -1 311 3 323 272 96 40 chr12 132157512 132157569 -12124920 - MIR SINE MIR -76 186 117 2528 111 8 0 chr12 132157570 132157929 -12124560 + L1PA11 LINE L1 5805 6166 -8 2409 50 20 0 chr12 132157933 132158232 -12124257 + AluY SINE Alu 5 309 -2 2101 109 30 0 chr12 132158244 132158547 -12123942 + AluSx SINE Alu 1 312 0 2095 101 0 24 chr12 132158550 132158848 -12123641 + AluY SINE Alu 1 291 -20 305 264 41 41 chr12 132158946 132159067 -12123422 - MIR SINE MIR -136 126 6 203 203 0 0 chr12 132159536 132159573 -12122916 - MIR SINE MIR -113 149 114 290 275 183 0 chr12 132159576 132159707 -12122782 + MIR3 SINE MIR 5 159 -49 696 284 135 10 chr12 132159755 132159963 -12122526 - MIR SINE MIR -21 241 8 2152 125 3 0 chr12 132160018 132160329 -12122160 + AluSx SINE Alu 1 312 0 1739 83 4 0 chr12 132160353 132160582 -12121907 + AluSp SINE Alu 83 312 -1 214 221 156 26 chr12 132160585 132160662 -12121827 - MIR SINE MIR -67 195 109 1616 110 0 0 chr12 132161651 132161878 -12120611 - AluSg/x SINE Alu -1 311 85 279 271 0 0 chr12 132162633 132162703 -12119786 + L3b LINE CR1 1320 1389 -194 1960 117 3 71 chr12 132162741 132163067 -12119422 - AluSx SINE Alu -8 304 1 232 265 88 66 chr12 132163535 132163671 -12118818 - MIR3 SINE MIR -22 186 48 462 251 227 0 chr12 132163864 132164044 -12118445 + MIR SINE MIR 41 262 0 193 386 0 57 chr12 132164063 132164151 -12118338 - MIR SINE MIR -168 94 12 378 301 73 14 chr12 132164158 132164305 -12118184 - MIR SINE MIR -72 136 17 2020 132 3 0 chr12 132164460 132164756 -12117733 + AluSx SINE Alu 1 297 -15 962 156 0 7 chr12 132165340 132165494 -12116995 + FRAM SINE Alu 1 151 -25 2030 105 10 33 chr12 132165501 132165639 -12116850 + AluSx SINE Alu 1 141 -171 2229 115 0 0 chr12 132165639 132165935 -12116554 + AluSx SINE Alu 3 298 -14 2030 105 10 33 chr12 132165935 132166100 -12116389 + AluSx SINE Alu 141 297 -15 910 216 57 47 chr12 132166119 132166415 -12116074 + HERVL68 LTR ERVL 917 1215 -1822 806 116 0 0 chr12 132166500 132166612 -12115877 + FRAM SINE Alu 54 165 -11 1017 241 11 11 chr12 132166613 132166875 -12115614 + HERVL68 LTR ERVL 1315 1576 -1461 2281 92 3 3 chr12 132166878 132167181 -12115308 - AluSq SINE Alu -10 303 1 2080 107 4 0 chr12 132167181 132167462 -12115027 - AluSx SINE Alu -30 282 1 1248 161 12 137 chr12 132167760 132167959 -12114530 + AluJb SINE Alu 1 143 -159 2210 79 7 3 chr12 132167959 132168249 -12114240 + AluSp SINE Alu 1 291 -22 1248 161 12 137 chr12 132168249 132168385 -12114104 + AluJb SINE Alu 143 294 -8 244 268 0 0 chr12 132168724 132168780 -12113709 - L2 LINE L2 -7 3265 3210 2119 134 0 3 chr12 132168837 132169150 -12113339 - AluSx SINE Alu 0 312 1 459 292 86 34 chr12 132170187 132170454 -12112035 - MLT1K LTR MaLR -238 350 70 2472 46 3 3 chr12 132170875 132171180 -12111309 - AluY SINE Alu -6 305 1 898 221 6 6 chr12 132171200 132171381 -12111108 + L1MB8 LINE L1 5986 6166 -12 258 269 39 13 chr12 132172003 132172081 -12110408 - L2 LINE L2 -6 3266 3187 2250 110 7 0 chr12 132172584 132172893 -12109596 + AluSx SINE Alu 1 311 -1 1803 155 14 3 chr12 132173143 132173434 -12109055 + AluJo SINE Alu 1 294 -18 288 0 0 0 chr12 132173435 132173467 -12109022 + (TG)n Simple_repeat Simple_repeat 2 33 0 555 310 147 22 chr12 132173469 132173830 -12108659 - L2 LINE L2 0 3313 2908 1144 242 42 36 chr12 132173839 132174195 -12108294 - MLT1B LTR MaLR -29 361 4 182 321 44 44 chr12 132174899 132175036 -12107453 - L2 LINE L2 -391 2923 2787 2087 134 0 3 chr12 132175746 132176154 -12106335 - AluSx SINE Alu 0 412 6 1879 127 45 0 chr12 132176160 132176452 -12106037 - AluSx SINE Alu -7 305 1 549 293 89 65 chr12 132176460 132176784 -12105705 - L1ME4a LINE L1 -4 6117 5786 2249 101 7 0 chr12 132177679 132177985 -12104504 - AluSx SINE Alu -4 308 1 226 202 24 83 chr12 132178896 132179064 -12103425 + (GGGTG)n Simple_repeat Simple_repeat 3 160 0 302 233 55 89 chr12 132180469 132180514 -12101975 + Charlie8 DNA MER1_type 38 83 -258 1636 145 29 42 chr12 132180514 132180678 -12101811 - AluJo SINE Alu -6 306 146 2082 97 31 7 chr12 132180678 132180843 -12101646 - AluSc SINE Alu -12 297 121 234 0 0 0 chr12 132180843 132180869 -12101620 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2082 97 31 7 chr12 132180869 132180993 -12101496 - AluSc SINE Alu -188 121 1 1636 145 29 42 chr12 132180993 132181138 -12101351 - AluJo SINE Alu -166 146 1 302 233 55 89 chr12 132181138 132181238 -12101251 + Charlie8 DNA MER1_type 83 178 -163 901 216 67 0 chr12 132181349 132181557 -12100932 - MER58A DNA MER1_type -1 223 2 212 294 9 56 chr12 132181833 132181894 -12100595 + MER5B DNA MER1_type 2 69 -120 2390 86 0 0 chr12 132181894 132182195 -12100294 + AluSg SINE Alu 1 301 -9 212 294 9 56 chr12 132182195 132182245 -12100244 + MER5B DNA MER1_type 69 120 -69 2325 80 3 3 chr12 132183782 132184083 -12098406 - AluSp SINE Alu -12 301 1 705 268 54 10 chr12 132184235 132184440 -12098049 + MIR SINE MIR 1 214 -48 232 224 41 0 chr12 132184995 132185044 -12097445 + MIR SINE MIR 95 145 -63 1087 119 0 0 chr12 132185049 132185208 -12097281 + AluJb SINE Alu 136 294 -18 450 304 134 13 chr12 132185742 132186055 -12096434 - L1MC4 LINE L1 0 8042 7692 447 333 24 12 chr12 132186453 132186621 -12095868 + MIR SINE MIR 6 175 -87 488 122 12 0 chr12 132186625 132186707 -12095782 + AluSp/q SINE Alu 228 310 -3 446 319 0 0 chr12 132186709 132186850 -12095639 - MER3 DNA MER1_type -65 144 4 235 240 74 74 chr12 132186919 132187040 -12095449 + L2 LINE L2 2638 2758 -556 2002 104 0 24 chr12 132187056 132187214 -12095275 - AluSx SINE Alu -22 290 141 2198 76 4 0 chr12 132187214 132187491 -12094998 - AluSp SINE Alu -19 294 17 2002 104 0 24 chr12 132187491 132187629 -12094860 - AluSx SINE Alu -171 141 1 263 306 0 44 chr12 132188127 132188307 -12094182 + GA-rich Low_complexity Low_complexity 3 174 0 209 323 0 15 chr12 132188921 132188986 -12093503 - MIR SINE MIR -179 83 20 1629 166 19 52 chr12 132189457 132189682 -12092807 + AluJo SINE Alu 1 195 -117 2030 133 3 3 chr12 132189682 132189984 -12092505 + AluSx SINE Alu 2 303 -9 1629 166 19 52 chr12 132189984 132190099 -12092390 + AluJo SINE Alu 195 312 0 328 250 57 0 chr12 132190126 132190214 -12092275 - MLT1J LTR MaLR -331 180 88 418 169 6 75 chr12 132190505 132190863 -12091626 + C-rich Low_complexity Low_complexity 1 333 0 267 102 38 70 chr12 132190866 132191052 -12091437 + (CACAC)n Simple_repeat Simple_repeat 1 180 0 254 159 80 45 chr12 132191054 132191142 -12091347 + (CACCC)n Simple_repeat Simple_repeat 3 93 0 240 60 0 60 chr12 132191321 132191371 -12091118 + (TCCC)n Simple_repeat Simple_repeat 2 48 0 1966 119 18 11 chr12 132192163 132192449 -12090040 + AluSx SINE Alu 3 290 -22 1573 187 41 62 chr12 132192458 132192509 -12089980 + L1MB7 LINE L1 5777 5828 -356 1401 201 19 42 chr12 132192509 132192817 -12089672 + AluJo SINE Alu 1 301 -11 1573 187 41 62 chr12 132192817 132193063 -12089426 + L1MB7 LINE L1 5828 6065 -119 1593 122 0 0 chr12 132193063 132193285 -12089204 + AluSg/x SINE Alu 85 306 -6 1573 187 41 62 chr12 132193285 132193403 -12089086 + L1MB7 LINE L1 6065 6184 0 407 292 89 24 chr12 132193429 132193597 -12088892 + MIR SINE MIR 63 241 -21 1357 238 133 21 chr12 132194083 132194503 -12087986 - MLT1C LTR MaLR 0 467 1 308 376 35 0 chr12 132194588 132194729 -12087760 + MIR SINE MIR 80 225 -37 281 259 49 0 chr12 132194944 132195025 -12087464 + MIR SINE MIR 51 135 -73 907 215 23 24 chr12 132195283 132195675 -12086814 - LTR16C LTR ERVL 0 491 66 537 152 105 0 chr12 132195799 132195904 -12086585 + MLT1D LTR MaLR 9 124 -381 1490 132 0 0 chr12 132195904 132196109 -12086380 + AluJo SINE Alu 1 205 -107 444 336 22 21 chr12 132196468 132196662 -12085827 + MIR SINE MIR 1 192 -60 1158 134 0 0 chr12 132196847 132197018 -12085471 - AluSg/x SINE Alu -9 301 131 2135 123 0 16 chr12 132197018 132197197 -12085292 - AluSx SINE Alu 0 312 139 2492 68 0 0 chr12 132197197 132197505 -12084984 - AluY SINE Alu -3 308 1 2135 123 0 16 chr12 132197505 132197642 -12084847 - AluSx SINE Alu -173 139 1 820 186 0 0 chr12 132197655 132197784 -12084705 + FRAM SINE Alu 1 122 -54 432 69 0 0 chr12 132198846 132198904 -12083585 - Alu SINE Alu -260 58 1 4195 139 51 13 chr12 132198930 132199087 -12083402 - MER50 LTR ERV1 -1 733 583 2140 116 3 0 chr12 132199087 132199381 -12083108 + AluSq SINE Alu 1 295 -18 4195 139 51 13 chr12 132199381 132199407 -12083082 - MER50 LTR ERV1 -151 583 559 2052 94 30 17 chr12 132199407 132199541 -12082948 + AluSx SINE Alu 3 134 -178 2224 109 0 0 chr12 132199541 132199844 -12082645 + AluSc SINE Alu 1 303 -6 2052 94 30 17 chr12 132199844 132200007 -12082482 + AluSx SINE Alu 134 304 -8 4195 139 51 13 chr12 132200007 132200527 -12081962 - MER50 LTR ERV1 -175 559 2 2190 124 0 0 chr12 132200670 132200969 -12081520 - AluSx SINE Alu -13 299 1 577 262 170 55 chr12 132201618 132201706 -12080783 - MLT1K LTR MaLR -16 572 496 1864 102 73 0 chr12 132201706 132201980 -12080509 + AluY SINE Alu 6 299 -12 577 262 170 55 chr12 132201980 132202368 -12080121 - MLT1K LTR MaLR -92 496 41 379 278 26 9 chr12 132202477 132202592 -12079897 + MIR3 SINE MIR 12 128 -80 2591 46 0 0 chr12 132202848 132203152 -12079337 - AluY SINE Alu -7 304 1 2080 107 4 0 chr12 132203152 132203433 -12079056 - AluSx SINE Alu -30 282 1 1248 161 12 137 chr12 132203731 132203930 -12078559 + AluJb SINE Alu 1 143 -159 2210 79 7 3 chr12 132203930 132204220 -12078269 + AluSp SINE Alu 1 291 -22 1248 161 12 137 chr12 132204220 132204356 -12078133 + AluJb SINE Alu 143 294 -8 244 268 0 0 chr12 132204695 132204751 -12077738 - L2 LINE L2 -7 3265 3210 2246 125 0 0 chr12 132204808 132205120 -12077369 - AluSx SINE Alu 0 312 1 459 292 86 34 chr12 132206155 132206422 -12076067 - MLT1K LTR MaLR -238 350 70 2472 46 3 3 chr12 132206843 132207148 -12075341 - AluY SINE Alu -6 305 1 898 221 6 6 chr12 132207168 132207349 -12075140 + L1MB8 LINE L1 5986 6166 -12 258 269 39 13 chr12 132207971 132208049 -12074440 - L2 LINE L2 -6 3266 3187 2250 110 7 0 chr12 132208552 132208861 -12073628 + AluSx SINE Alu 1 311 -1 1803 155 14 3 chr12 132209110 132209401 -12073088 + AluJo SINE Alu 1 294 -18 288 0 0 0 chr12 132209402 132209434 -12073055 + (TG)n Simple_repeat Simple_repeat 2 33 0 555 310 147 22 chr12 132209436 132209797 -12072692 - L2 LINE L2 0 3313 2908 1144 242 42 36 chr12 132209806 132210162 -12072327 - MLT1B LTR MaLR -29 361 4 182 321 44 44 chr12 132210866 132211003 -12071486 - L2 LINE L2 -391 2923 2787 2087 134 0 3 chr12 132211713 132212121 -12070368 - AluSx SINE Alu 0 412 6 1879 127 45 0 chr12 132212127 132212419 -12070070 - AluSx SINE Alu -7 305 1 241 283 72 69 chr12 132212475 132212751 -12069738 - L1ME4a LINE L1 -59 6062 5786 2249 101 7 0 chr12 132213646 132213952 -12068537 - AluSx SINE Alu -4 308 1 226 202 24 83 chr12 132214863 132215031 -12067458 + (GGGTG)n Simple_repeat Simple_repeat 3 160 0 302 233 55 89 chr12 132216435 132216480 -12066009 + Charlie8 DNA MER1_type 38 83 -258 1636 145 29 42 chr12 132216480 132216644 -12065845 - AluJo SINE Alu -6 306 146 2082 97 31 7 chr12 132216644 132216809 -12065680 - AluSc SINE Alu -12 297 121 234 0 0 0 chr12 132216809 132216835 -12065654 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2082 97 31 7 chr12 132216835 132216959 -12065530 - AluSc SINE Alu -188 121 1 1636 145 29 42 chr12 132216959 132217104 -12065385 - AluJo SINE Alu -166 146 1 302 233 55 89 chr12 132217104 132217204 -12065285 + Charlie8 DNA MER1_type 83 178 -163 860 217 72 0 chr12 132217315 132217522 -12064967 - MER58A DNA MER1_type -1 223 2 212 294 9 56 chr12 132217798 132217859 -12064630 + MER5B DNA MER1_type 2 69 -120 2355 86 0 3 chr12 132217859 132218161 -12064328 + AluSg SINE Alu 1 301 -9 212 294 9 56 chr12 132218161 132218211 -12064278 + MER5B DNA MER1_type 69 120 -69 2325 80 3 3 chr12 132219744 132220045 -12062444 - AluSp SINE Alu -12 301 1 705 268 54 10 chr12 132220197 132220402 -12062087 + MIR SINE MIR 1 214 -48 232 224 41 0 chr12 132220957 132221006 -12061483 + MIR SINE MIR 95 145 -63 1087 119 0 0 chr12 132221011 132221170 -12061319 + AluJb SINE Alu 136 294 -18 450 304 134 13 chr12 132221703 132222016 -12060473 - L1MC4 LINE L1 0 8042 7692 447 333 24 12 chr12 132222414 132222582 -12059907 + MIR SINE MIR 6 175 -87 488 122 12 0 chr12 132222586 132222668 -12059821 + AluSp/q SINE Alu 228 310 -3 446 319 0 0 chr12 132222670 132222811 -12059678 - MER3 DNA MER1_type -65 144 4 415 272 84 27 chr12 132222880 132223017 -12059472 + L2 LINE L2 2638 2766 -547 2002 104 0 24 chr12 132223017 132223175 -12059314 - AluSx SINE Alu -22 290 141 2198 76 4 0 chr12 132223175 132223452 -12059037 - AluSp SINE Alu -19 294 17 2002 104 0 24 chr12 132223452 132223590 -12058899 - AluSx SINE Alu -171 141 1 415 272 84 27 chr12 132223590 132223773 -12058716 + L2 LINE L2 2766 2977 -336 2254 104 0 0 chr12 132223957 132224256 -12058233 + AluSg SINE Alu 7 305 -5 331 320 48 24 chr12 132224256 132224434 -12058055 - MIR3 SINE MIR -58 150 6 738 180 58 0 chr12 132224556 132224728 -12057761 - Tigger7 DNA MER2_type 0 2491 2310 718 97 0 0 chr12 132224728 132224821 -12057668 + AluJ/FLAM SINE Alu 1 93 -219 1043 217 65 0 chr12 132224827 132225057 -12057432 - Tigger7 DNA MER2_type -2231 256 12 2171 104 0 29 chr12 132225099 132225282 -12057207 - AluSx SINE Alu 0 312 125 2331 73 3 16 chr12 132225282 132225597 -12056892 - AluY SINE Alu 0 311 1 2261 81 0 19 chr12 132225597 132225906 -12056583 - AluY SINE Alu -8 303 1 2171 104 0 29 chr12 132225906 132226037 -12056452 - AluSx SINE Alu -185 127 6 517 268 177 57 chr12 132226207 132226441 -12056048 + L2 LINE L2 2916 3207 -106 2059 130 0 9 chr12 132226441 132226756 -12055733 + AluSx SINE Alu 1 312 0 517 268 177 57 chr12 132226756 132226872 -12055617 + L2 LINE L2 3207 3308 -5 269 157 39 0 chr12 132227179 132227230 -12055259 + MIR SINE MIR 104 156 -106 2009 121 38 0 chr12 132227306 132227596 -12054893 + AluSx SINE Alu 1 301 -11 838 154 0 0 chr12 132227607 132227737 -12054752 - FRAM SINE Alu -36 140 11 710 256 13 0 chr12 132227739 132227895 -12054594 - MIR SINE MIR -27 235 78 305 294 20 20 chr12 132228240 132228342 -12054147 - MIR SINE MIR -63 199 98 1925 110 0 88 chr12 132228346 132228482 -12054007 + AluSx SINE Alu 1 95 -217 2157 87 19 13 chr12 132228482 132228791 -12053698 + AluY SINE Alu 1 311 0 1925 110 0 88 chr12 132228791 132228973 -12053516 + AluSx SINE Alu 95 291 -21 204 125 0 0 chr12 132228975 132229007 -12053482 + (TA)n Simple_repeat Simple_repeat 2 33 0 1593 172 14 4 chr12 132229011 132229290 -12053199 - AluJb SINE Alu -30 282 1 234 303 11 38 chr12 132229717 132229902 -12052587 + GA-rich Low_complexity Low_complexity 1 180 0 246 251 48 66 chr12 132230117 132230166 -12052323 - MER113 DNA MER1_type? -352 169 121 1840 140 0 14 chr12 132230166 132230477 -12052012 + AluJo SINE Alu 1 307 0 246 251 48 66 chr12 132230477 132230593 -12051896 - MER113 DNA MER1_type? -400 121 6 2399 84 0 0 chr12 132230722 132231020 -12051469 + AluSg SINE Alu 1 298 -12 1952 135 0 16 chr12 132231037 132231341 -12051148 + AluJo SINE Alu 1 299 -13 2064 123 3 3 chr12 132231627 132231927 -12050562 - AluSx SINE Alu -12 300 1 1037 181 22 64 chr12 132231927 132232240 -12050249 + L1ME1 LINE L1 5855 6160 -14 616 301 21 32 chr12 132232678 132232960 -12049529 - AluY SINE Alu -15 296 18 1326 95 11 5 chr12 132233073 132233262 -12049227 - AluSp SINE Alu -123 190 1 1636 176 0 11 chr12 132233468 132233747 -12048742 + AluJb SINE Alu 23 298 -14 1326 102 0 0 chr12 132234803 132234980 -12047509 + AluSg/x SINE Alu 104 280 -32 1700 170 3 0 chr12 132234980 132235262 -12047227 + AluSx SINE Alu 29 311 -1 182 205 13 64 chr12 132235389 132235467 -12047022 - L2 LINE L2 -362 2951 2878 267 250 15 0 chr12 132235909 132235977 -12046512 + MER58 DNA MER1_type 2352 2420 0 2311 93 7 0 chr12 132236000 132236310 -12046179 + AluSp SINE Alu 1 312 -1 2296 70 0 3 chr12 132236413 132236725 -12045764 - AluSq SINE Alu 0 311 1 251 288 30 0 chr12 132236825 132236891 -12045598 + MIR3 SINE MIR 92 159 -49 1022 169 6 0 chr12 132237052 132237224 -12045265 - FRAM SINE Alu -5 171 1 2325 45 14 7 chr12 132237232 132237523 -12044966 - AluY SINE Alu -18 293 1 513 304 96 0 chr12 132237538 132237808 -12044681 - LTR16A LTR ERVL -79 371 76 670 254 159 12 chr12 132238061 132238400 -12044089 - MLT1K LTR MaLR 0 588 200 1835 128 18 14 chr12 132238529 132238811 -12043678 + AluSq SINE Alu 1 283 -30 662 34 11 22 chr12 132238811 132238894 -12043595 - AluSg/x SINE Alu -20 289 208 1537 192 24 14 chr12 132239223 132239514 -12042975 - AluJo SINE Alu -18 294 1 1867 166 0 7 chr12 132239515 132239817 -12042672 - AluJo SINE Alu -12 300 1 2016 102 10 57 chr12 132239828 132240142 -12042347 - AluSx SINE Alu -13 299 1 1771 210 42 52 chr12 132240142 132240288 -12042201 - HERVL68 LTR ERVL -975 2062 1916 999 199 0 0 chr12 132240288 132240454 -12042035 - FRAM SINE Alu 0 166 1 1771 210 42 52 chr12 132240454 132240803 -12041686 - HERVL68 LTR ERVL -1121 1916 1572 1963 136 7 3 chr12 132240804 132241098 -12041391 + AluSx SINE Alu 1 295 -17 1977 90 0 0 chr12 132241109 132241364 -12041125 + AluY SINE Alu 2 256 -55 207 0 0 0 chr12 132241364 132241387 -12041102 + (A)n Simple_repeat Simple_repeat 1 23 0 620 59 0 79 chr12 132241387 132241488 -12041001 + AluY SINE Alu 216 308 -3 2292 89 3 0 chr12 132241488 132241790 -12040699 + AluSq SINE Alu 1 303 -10 1017 241 11 11 chr12 132241793 132242055 -12040434 - HERVL68 LTR ERVL -1461 1576 1315 806 116 0 0 chr12 132242056 132242168 -12040321 - FRAM SINE Alu -11 165 54 1102 219 131 37 chr12 132242175 132242549 -12039940 - HERVL68 LTR ERVL -1712 1325 917 1965 103 17 33 chr12 132242568 132242733 -12039756 - AluSx SINE Alu -15 297 138 2237 114 0 0 chr12 132242733 132243030 -12039459 - AluSx SINE Alu -13 299 3 1965 103 17 33 chr12 132243030 132243166 -12039323 - AluSx SINE Alu -174 138 1 962 156 0 7 chr12 132243173 132243327 -12039162 - FRAM SINE Alu -25 151 1 2020 132 3 0 chr12 132243911 132244207 -12038282 - AluSx SINE Alu -15 297 1 378 301 73 14 chr12 132244362 132244509 -12037980 + MIR SINE MIR 17 171 -72 193 386 0 57 chr12 132244516 132244604 -12037885 + MIR SINE MIR 12 94 -168 462 251 227 0 chr12 132244623 132244803 -12037686 - MIR SINE MIR 0 262 41 232 265 88 66 chr12 132244996 132245132 -12037357 + MIR3 SINE MIR 48 186 -22 1960 117 3 71 chr12 132245600 132245926 -12036563 + AluSx SINE Alu 1 304 -8 279 271 0 0 chr12 132245964 132246034 -12036455 - L3b LINE CR1 -194 1389 1320 1616 110 0 0 chr12 132246788 132247015 -12035474 + AluSg/x SINE Alu 83 309 -1 214 221 156 26 chr12 132248004 132248081 -12034408 + MIR SINE MIR 109 195 -67 1745 83 4 0 chr12 132248085 132248315 -12034174 - AluSp SINE Alu 0 313 83 2152 125 3 0 chr12 132248339 132248650 -12033839 - AluSx SINE Alu 0 312 1 696 284 135 10 chr12 132248705 132248913 -12033576 + MIR SINE MIR 8 241 -21 290 275 183 0 chr12 132248961 132249092 -12033397 - MIR3 SINE MIR -49 159 5 186 243 0 0 chr12 132249095 132249132 -12033357 + MIR SINE MIR 113 149 -113 305 264 41 41 chr12 132249601 132249722 -12032767 + MIR SINE MIR 6 126 -136 2095 101 0 24 chr12 132249820 132250118 -12032371 - AluY SINE Alu -20 291 1 2101 109 30 0 chr12 132250121 132250424 -12032065 - AluSx SINE Alu 0 312 1 2418 47 20 0 chr12 132250436 132250735 -12031754 - AluY SINE Alu -2 309 5 2528 111 8 0 chr12 132250739 132251098 -12031391 - L1PA11 LINE L1 -8 6166 5805 329 274 97 32 chr12 132251099 132251156 -12031333 + MIR SINE MIR 117 169 -93 2183 101 23 13 chr12 132251156 132251463 -12031026 + AluSx SINE Alu 3 312 0 329 274 97 32 chr12 132251463 132251529 -12030960 + MIR SINE MIR 169 248 -14 896 122 0 0 chr12 132251616 132251747 -12030742 + FLAM_C SINE Alu 1 131 -12 1855 165 0 0 chr12 132251766 132252057 -12030432 + AluJo SINE Alu 1 291 -21 2430 10 0 47 chr12 132252063 132252408 -12030081 + AluY SINE Alu 1 331 0 23 54 0 0 chr12 132252412 132252449 -12030040 + AT_rich Low_complexity Low_complexity 1 37 0 2055 100 10 14 chr12 132252460 132252751 -12029738 + AluSx SINE Alu 21 310 -2 1856 101 7 69 chr12 132252790 132252922 -12029567 + AluSx SINE Alu 21 160 -152 2323 81 7 0 chr12 132252922 132253218 -12029271 + AluSp SINE Alu 1 298 -15 1856 101 7 69 chr12 132253218 132253391 -12029098 + AluSx SINE Alu 160 307 -5 303 200 0 0 chr12 132253391 132253446 -12029043 + Alu SINE Alu 1 55 -246 1214 114 0 0 chr12 132253446 132253613 -12028876 + AluSg/x SINE Alu 137 303 -9 2174 78 3 20 chr12 132253787 132254083 -12028406 - AluY SINE Alu -20 291 1 398 262 37 9 chr12 132254161 132254268 -12028221 - L2 LINE L2 -20 3252 3143 298 211 28 14 chr12 132254281 132254352 -12028137 - MIR SINE MIR -92 116 45 743 230 0 7 chr12 132254686 132254838 -12027651 + MIR SINE MIR 7 157 -105 667 143 0 121 chr12 132254895 132255035 -12027454 + AluJb SINE Alu 3 125 -187 1617 168 41 0 chr12 132255317 132255609 -12026880 + AluSp SINE Alu 1 304 -9 2130 113 0 0 chr12 132255611 132255932 -12026557 + AluSx SINE Alu 1 321 0 296 356 19 0 chr12 132256098 132256202 -12026287 - MER91B DNA MER1_type -1 189 84 265 189 56 122 chr12 132256210 132256260 -12026229 - MER91B DNA MER1_type -60 130 87 1628 173 16 20 chr12 132256260 132256386 -12026103 + AluJo SINE Alu 1 126 -186 2149 120 3 0 chr12 132256386 132256687 -12025802 + AluSq SINE Alu 1 302 -11 1628 173 16 20 chr12 132256687 132256866 -12025623 + AluJo SINE Alu 126 305 -7 265 189 56 122 chr12 132256866 132256905 -12025584 - MER91B DNA MER1_type -103 87 47 407 313 8 8 chr12 132257573 132257707 -12024782 + MIR SINE MIR 20 153 -55 2113 125 0 0 chr12 132257707 132258002 -12024487 + AluSq SINE Alu 1 295 -18 1433 205 7 11 chr12 132258025 132258308 -12024181 + AluJo SINE Alu 1 282 -30 195 302 119 0 chr12 132258394 132258520 -12023969 - L2 LINE L2 -122 3191 3051 540 163 0 0 chr12 132258521 132258601 -12023888 + AluJo/FLAM SINE Alu 35 114 -198 2446 40 7 16 chr12 132258602 132258906 -12023583 - AluY SINE Alu -10 301 1 2261 81 0 19 chr12 132258906 132259215 -12023274 - AluY SINE Alu -8 303 1 1018 86 0 0 chr12 132259218 132259346 -12023143 - AluSq/x SINE Alu -179 133 6 517 268 177 57 chr12 132259516 132259750 -12022739 + L2 LINE L2 2916 3207 -106 2059 130 0 9 chr12 132259750 132260065 -12022424 + AluSx SINE Alu 1 312 0 517 268 177 57 chr12 132260065 132260181 -12022308 + L2 LINE L2 3207 3308 -5 269 157 39 0 chr12 132260488 132260539 -12021950 + MIR SINE MIR 104 156 -106 2009 121 38 0 chr12 132260615 132260905 -12021584 + AluSx SINE Alu 1 301 -11 841 179 0 0 chr12 132260911 132261051 -12021438 - FRAM SINE Alu -30 146 7 703 248 13 0 chr12 132261052 132261205 -12021284 - MIR SINE MIR -30 232 78 219 168 78 0 chr12 132261660 132261714 -12020775 + MIR SINE MIR 102 156 -58 203 344 62 0 chr12 132261930 132262026 -12020463 - MIR SINE MIR -80 182 81 883 189 0 0 chr12 132262080 132262228 -12020261 + FRAM SINE Alu 2 149 -27 1945 138 0 0 chr12 132263858 132264141 -12018348 - AluSx SINE Alu -1 311 29 1523 91 0 0 chr12 132264141 132264338 -12018151 - AluSg/x SINE Alu -32 278 82 273 223 331 8 chr12 132264344 132264474 -12018015 - MIR SINE MIR -60 202 31 2272 48 45 0 chr12 132269755 132270044 -12012445 + AluSp SINE Alu 1 302 -11 203 320 80 10 chr12 132271117 132271217 -12011272 + MIR3 SINE MIR 14 120 -88 633 204 61 55 chr12 132271978 132272159 -12010330 + MER5A DNA MER1_type 8 189 0 22 56 0 0 chr12 132273058 132273094 -12009395 + GC_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr12 132273650 132273682 -12008807 + GC_rich Low_complexity Low_complexity 1 32 0 21 100 0 0 chr12 132273715 132273785 -12008704 + GC_rich Low_complexity Low_complexity 1 70 0 27 29 0 0 chr12 132276616 132276650 -12005839 + GC_rich Low_complexity Low_complexity 1 34 0 314 98 20 0 chr12 132276923 132276974 -12005515 + (GGA)n Simple_repeat Simple_repeat 2 53 0 258 105 0 0 chr12 132277061 132277099 -12005390 + (CAG)n Simple_repeat Simple_repeat 3 40 0 29 78 0 0 chr12 132277100 132277164 -12005325 + GC_rich Low_complexity Low_complexity 1 64 0 24 67 0 0 chr12 132277253 132277298 -12005191 + GC_rich Low_complexity Low_complexity 1 45 0 201 74 0 0 chr12 132277303 132277330 -12005159 + (CGGG)n Simple_repeat Simple_repeat 1 27 0 23 33 0 0 chr12 132277439 132277469 -12005020 + GC_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 132277667 132277692 -12004797 + GC_rich Low_complexity Low_complexity 1 25 0 200 213 0 0 chr12 132278685 132278732 -12003757 + T-rich Low_complexity Low_complexity 1 47 0 285 98 0 0 chr12 132280440 132280481 -12002008 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 2200 106 3 13 chr12 132281858 132282169 -12000320 - AluSx SINE Alu -4 308 1 24 0 0 0 chr12 132285123 132285147 -11997342 + GC_rich Low_complexity Low_complexity 1 24 0 396 266 11 25 chr12 132285305 132285433 -11997056 + MIR SINE MIR 45 170 -63 249 108 0 0 chr12 132285747 132285784 -11996705 + (TG)n Simple_repeat Simple_repeat 1 37 0 940 249 75 8 chr12 132286406 132286647 -11995842 + MIR SINE MIR 3 259 -3 487 209 36 18 chr12 132286787 132286897 -11995592 + L2 LINE L2 3161 3272 0 433 301 32 19 chr12 132286860 132287016 -11995473 - MIR SINE MIR -37 225 68 * 226 237 0 40 chr12 132287237 132287313 -11995176 + C-rich Low_complexity Low_complexity 5 77 0 188 128 0 43 chr12 132287326 132287373 -11995116 + (CCCCCA)n Simple_repeat Simple_repeat 4 48 0 839 159 0 0 chr12 132288141 132288267 -11994222 + FLAM_C SINE Alu 1 126 -17 379 200 67 0 chr12 132288277 132288367 -11994122 - Charlie5 DNA MER1_type -2495 117 22 1784 142 37 7 chr12 132288501 132288797 -11993692 - AluJb SINE Alu -7 305 1 2137 141 0 0 chr12 132288812 132289124 -11993365 - AluSx SINE Alu 0 312 1 201 167 0 62 chr12 132289229 132289277 -11993212 + C-rich Low_complexity Low_complexity 2 46 0 185 333 14 0 chr12 132289527 132289596 -11992893 - MIR SINE MIR -31 231 162 21 0 0 0 chr12 132290446 132290467 -11992022 + GC_rich Low_complexity Low_complexity 1 21 0 288 53 0 0 chr12 132290612 132290650 -11991839 + (GGA)n Simple_repeat Simple_repeat 2 39 0 609 289 22 22 chr12 132291046 132291271 -11991218 + L1MB5 LINE L1 5909 6133 -41 2281 103 0 0 chr12 132291278 132291580 -11990909 + AluSx SINE Alu 1 302 -10 2443 60 0 0 chr12 132291606 132291904 -11990585 + AluY SINE Alu 1 298 -13 2237 88 24 0 chr12 132291960 132292255 -11990234 + AluSq SINE Alu 1 302 -11 231 190 0 0 chr12 132292507 132292565 -11989924 + GA-rich Low_complexity Low_complexity 1 58 0 612 285 11 5 chr12 132293333 132293519 -11988970 + MER3 DNA MER1_type 7 193 -16 2438 80 0 0 chr12 132293519 132293830 -11988659 - AluY SINE Alu 0 311 1 753 229 62 5 chr12 132293900 132294092 -11988397 - MER8 DNA MER2_type -36 203 1 315 326 130 7 chr12 132294153 132294291 -11988198 - L2 LINE L2 -3 3310 3156 1157 90 12 12 chr12 132294297 132294463 -11988026 + AluSg/x SINE Alu 144 309 -1 2086 120 7 3 chr12 132294466 132294775 -11987714 + AluSx SINE Alu 2 311 -1 1603 144 94 0 chr12 132294801 132295078 -11987411 + AluJb SINE Alu 1 303 -9 268 196 0 0 chr12 132295140 132295191 -11987298 - MER103 DNA DNA -79 87 37 244 313 0 0 chr12 132295278 132295342 -11987147 - L2 LINE L2 -4 3309 3246 221 284 9 46 chr12 132295991 132296100 -11986389 + C-rich Low_complexity Low_complexity 2 106 0 186 176 0 0 chr12 132296315 132296366 -11986123 + C-rich Low_complexity Low_complexity 2 52 0 794 219 49 11 chr12 132297071 132297254 -11985235 - MIR SINE MIR -65 197 8 226 257 118 44 chr12 132297324 132297365 -11985124 - MIR SINE MIR -13 249 212 2174 118 0 0 chr12 132297365 132297661 -11984828 + AluSx SINE Alu 2 297 -15 226 257 118 44 chr12 132297661 132297755 -11984734 - MIR SINE MIR -50 212 104 1232 152 144 16 chr12 132297759 132298002 -11984487 + AluSg SINE Alu 30 303 -7 1971 151 0 19 chr12 132298627 132298945 -11983544 - AluSx SINE Alu 0 312 1 310 289 46 141 chr12 132298956 132299094 -11983395 - L2 LINE L2 -1 3312 3162 818 139 0 0 chr12 132299094 132299209 -11983280 - FLAM_C SINE Alu -17 116 2 310 289 46 141 chr12 132299209 132299551 -11982938 - L2 LINE L2 -151 3162 2878 256 271 14 0 chr12 132301219 132301289 -11981200 + MIR SINE MIR 82 152 -110 718 198 123 27 chr12 132301417 132301604 -11980885 + MER3 DNA MER1_type 5 209 0 422 278 149 26 chr12 132301702 132301896 -11980593 + MIR SINE MIR 39 256 -6 292 320 164 16 chr12 132301919 132302422 -11980067 - L2 LINE L2 -209 3063 2470 819 189 85 40 chr12 132302568 132302769 -11979720 - MER58A DNA MER1_type -13 211 2 212 310 0 58 chr12 132302771 132302858 -11979631 - L2 LINE L2 -1037 2277 2196 31 0 0 0 chr12 132303301 132303332 -11979157 + GC_rich Low_complexity Low_complexity 1 31 0 217 135 39 0 chr12 132303506 132303558 -11978931 + CT-rich Low_complexity Low_complexity 1 54 0 205 212 30 0 chr12 132304838 132304904 -11977585 + T-rich Low_complexity Low_complexity 5 72 0 2078 109 3 16 chr12 132305770 132306073 -11976416 - AluJo SINE Alu -13 299 1 264 358 67 52 chr12 132306504 132306722 -11975767 + L1MC/D LINE L1 5381 5609 -2199 2115 96 7 7 chr12 132306722 132307013 -11975476 + AluSx SINE Alu 1 291 -21 264 358 67 52 chr12 132307013 132307199 -11975290 + L1MC/D LINE L1 5609 5791 -2017 439 171 23 0 chr12 132307282 132307370 -11975119 - L2 LINE L2 0 3313 3224 801 229 11 6 chr12 132307466 132307641 -11974848 - FRAM SINE Alu -7 169 1 2038 116 3 47 chr12 132307646 132307964 -11974525 - AluSp SINE Alu -7 306 3 349 301 68 34 chr12 132307970 132308034 -11974455 - HAL1 LINE L1 -1312 1195 1135 2154 118 3 6 chr12 132308034 132308347 -11974142 - AluSx SINE Alu 0 312 1 1599 143 6 137 chr12 132308355 132308566 -11973923 - AluJb SINE Alu -1 301 151 2166 112 3 3 chr12 132308566 132308871 -11973618 - AluSx SINE Alu -7 305 1 1599 143 6 137 chr12 132308871 132309002 -11973487 - AluJb SINE Alu -151 151 4 349 301 68 34 chr12 132309002 132309074 -11973415 - HAL1 LINE L1 -1378 1129 1045 1483 157 0 16 chr12 132309289 132309531 -11972958 + AluJb SINE Alu 31 268 -44 709 251 119 0 chr12 132309601 132309820 -11972669 - MIR SINE MIR -3 259 15 1810 84 25 0 chr12 132309841 132310105 -11972384 - AluSq SINE Alu 0 308 39 2091 117 0 0 chr12 132310107 132310398 -11972091 - AluSx SINE Alu -21 291 1 250 308 96 19 chr12 132310405 132310509 -11971980 - Charlie8 DNA MER1_type -2302 115 4 1824 177 16 10 chr12 132310785 132311095 -11971394 + AluSx SINE Alu 1 312 0 1885 67 112 4 chr12 132311504 132311773 -11970716 + AluYa8 SINE Alu 1 298 -12 255 250 193 68 chr12 132311811 132311968 -11970521 + L2 LINE L2 2922 3109 -204 1670 125 13 46 chr12 132311968 132312272 -11970217 - AluJo SINE Alu -18 294 1 255 250 193 68 chr12 132312272 132312306 -11970183 + L2 LINE L2 3109 3137 -176 276 265 206 16 chr12 132313152 132313288 -11969201 + L2 LINE L2 2522 2631 -683 2226 98 3 0 chr12 132313288 132313585 -11968904 - AluSx SINE Alu -14 298 1 276 265 206 16 chr12 132313585 132313637 -11968852 + L2 LINE L2 2631 2746 -568 1172 209 36 133 chr12 132313637 132313795 -11968694 + L1MC4 LINE L1 5510 5682 -2360 1684 94 15 30 chr12 132313795 132313897 -11968592 + AluSq SINE Alu 35 137 -176 2215 87 3 26 chr12 132313897 132314206 -11968283 + AluSx SINE Alu 1 302 -10 1684 94 15 30 chr12 132314206 132314369 -11968120 + AluSq SINE Alu 137 296 -17 1172 209 36 133 chr12 132314369 132315064 -11967425 + L1MC4 LINE L1 5682 6005 -2037 2036 182 38 82 chr12 132314372 132314661 -11967828 + L1MB7 LINE L1 5602 5902 -282 2227 108 0 3 chr12 132314661 132314967 -11967522 - AluSg SINE Alu -3 307 3 2036 182 38 82 chr12 132314967 132315147 -11967342 + L1MB7 LINE L1 5902 6088 -96 1620 163 0 26 chr12 132315147 132315417 -11967072 - AluJo SINE Alu -49 263 1 1666 167 27 14 chr12 132315423 132315716 -11966773 - AluJb SINE Alu -15 297 1 2423 92 0 0 chr12 132315726 132316032 -11966457 - AluSg SINE Alu -4 306 1 2036 182 38 82 chr12 132316032 132316143 -11966346 + L1MB7 LINE L1 6102 6175 -9 780 259 127 35 chr12 132316155 132316603 -11965886 + L2 LINE L2 2736 3228 -85 1276 102 59 0 chr12 132317038 132317224 -11965265 - AluSq SINE Alu -9 304 108 42 0 0 0 chr12 132317271 132317313 -11965176 + GC_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr12 132317432 132317456 -11965033 + GC_rich Low_complexity Low_complexity 1 24 0 414 100 14 0 chr12 132318675 132318745 -11963744 - L1PA14 LINE L1 0 6161 6091 330 303 148 7 chr12 132319485 132319627 -11962862 + MIR SINE MIR 35 196 -66 2338 90 0 0 chr12 132319719 132320018 -11962471 - AluSg SINE Alu -11 299 1 1153 101 0 6 chr12 132320199 132320367 -11962122 + AluY SINE Alu 138 304 -7 918 169 11 11 chr12 132320368 132320545 -11961944 - MSTB LTR MaLR -249 177 1 739 131 46 0 chr12 132320547 132320677 -11961812 - MLT1A1 LTR MaLR -229 136 1 498 262 123 40 chr12 132320729 132320981 -11961508 + MLT1J LTR MaLR 239 511 0 1572 129 77 29 chr12 132321051 132321362 -11961127 + MER4B LTR ERV1 9 334 -276 320 247 11 45 chr12 132322459 132322548 -11959941 - MIR3 SINE MIR -13 195 110 1218 183 0 48 chr12 132324687 132324917 -11957572 - AluJo SINE Alu -92 220 2 1363 132 5 0 chr12 132324926 132325138 -11957351 - AluSq SINE Alu -10 303 91 1870 201 60 35 chr12 132325141 132325362 -11957127 - L1M4 LINE L1 -1009 5137 4923 1951 144 16 23 chr12 132325362 132325668 -11956821 - AluJb SINE Alu -8 304 1 1870 201 60 35 chr12 132325668 132325963 -11956526 - L1M4 LINE L1 -1223 4923 4608 195 42 0 0 chr12 132326178 132326202 -11956287 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 2041 119 0 0 chr12 132326204 132326473 -11956016 - AluSx SINE Alu -41 271 3 2227 87 0 7 chr12 132326572 132326888 -11955601 - AluY SINE Alu 0 311 1 554 290 60 21 chr12 132326901 132327184 -11955305 - L1ME4a LINE L1 -197 5924 5631 291 223 80 69 chr12 132327589 132327764 -11954725 + L1 LINE L1 3205 3381 -2765 21 36 0 0 chr12 132327861 132327889 -11954600 + AT_rich Low_complexity Low_complexity 1 28 0 197 286 16 0 chr12 132328117 132328180 -11954309 - L3 LINE CR1 -341 1236 1173 1820 96 117 33 chr12 132328441 132328774 -11953715 + MER4E LTR ERV1 1 361 -418 1253 98 82 16 chr12 132328778 132328962 -11953527 + AluSg SINE Alu 1 196 -114 2420 85 12 26 chr12 132328992 132329105 -11953384 + MER4E LTR ERV1 352 465 -301 2033 130 18 0 chr12 132329105 132329389 -11953100 - AluSx SINE Alu -23 289 1 2420 85 12 26 chr12 132329389 132329710 -11952779 + MER4E LTR ERV1 465 766 0 21 36 0 0 chr12 132330853 132330881 -11951608 + GC_rich Low_complexity Low_complexity 1 28 0 314 98 20 0 chr12 132331328 132331379 -11951110 + (TCC)n Simple_repeat Simple_repeat 2 53 0 27 29 0 0 chr12 132331652 132331686 -11950803 + GC_rich Low_complexity Low_complexity 1 34 0 2309 64 7 30 chr12 132332758 132333056 -11949433 - AluSg1 SINE Alu -18 291 1 1772 165 0 11 chr12 132333627 132333906 -11948583 - AluJb SINE Alu -14 298 23 205 277 95 81 chr12 132334018 132334112 -11948377 + L2 LINE L2 2643 2741 -573 2293 100 7 3 chr12 132334112 132334412 -11948077 + AluSp SINE Alu 1 301 -12 205 277 95 81 chr12 132334412 132334465 -11948024 + L2 LINE L2 2741 2792 -522 1205 121 6 0 chr12 132334483 132334648 -11947841 - AluSg/x SINE Alu -12 298 133 544 186 21 64 chr12 132334652 132334792 -11947697 + MIR SINE MIR 117 250 -12 796 178 0 0 chr12 132334931 132335070 -11947419 + FLAM_C SINE Alu 2 140 0 536 208 40 69 chr12 132335076 132335183 -11947306 + L1ME1 LINE L1 5087 5187 -959 1898 102 16 0 chr12 132335183 132335429 -11947060 + AluSq SINE Alu 1 250 -63 536 208 40 69 chr12 132335429 132335523 -11946966 + L1ME1 LINE L1 5187 5282 -864 1440 176 43 50 chr12 132335530 132335633 -11946856 + AluJo SINE Alu 10 112 -200 2044 135 16 3 chr12 132335633 132335936 -11946553 - AluSq SINE Alu -6 307 1 1440 176 43 50 chr12 132335936 132336133 -11946356 + AluJo SINE Alu 112 308 -4 287 148 19 0 chr12 132336133 132336187 -11946302 + L1ME1 LINE L1 5278 5332 -814 2249 131 0 3 chr12 132336187 132336500 -11945989 + AluSx SINE Alu 1 312 0 777 144 121 0 chr12 132336515 132336671 -11945818 + AluSg/x SINE Alu 137 308 0 855 198 45 0 chr12 132336811 132336968 -11945521 - FRAM SINE Alu -16 160 1 227 222 0 0 chr12 132336978 132337032 -11945457 + L1ME1 LINE L1 5773 5826 -338 877 161 0 97 chr12 132337037 132337186 -11945303 + AluJo SINE Alu 1 130 -182 2150 120 0 23 chr12 132337186 132337485 -11945004 + AluSx SINE Alu 2 293 -19 877 161 0 97 chr12 132337485 132337521 -11944968 + AluJo SINE Alu 130 168 -144 195 42 0 0 chr12 132337564 132337588 -11944901 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1205 172 20 74 chr12 132337590 132337636 -11944853 + L1ME1 LINE L1 5817 5864 -310 2166 123 0 7 chr12 132337636 132337938 -11944551 - AluSx SINE Alu -12 300 1 1205 172 20 74 chr12 132337938 132338251 -11944238 + L1ME1 LINE L1 5864 6160 -14 403 301 66 36 chr12 132338570 132338680 -11943809 - L1MC4a LINE L1 -1875 5933 5828 2466 68 0 13 chr12 132338680 132338988 -11943501 - AluY SINE Alu -3 308 5 195 42 0 0 chr12 132338993 132339017 -11943472 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1901 140 11 0 chr12 132339022 132339300 -11943189 - AluSx SINE Alu -31 281 1 403 301 66 36 chr12 132339300 132339373 -11943116 - L1MC4a LINE L1 -1986 5822 5732 189 107 0 0 chr12 132339394 132339422 -11943067 + (T)n Simple_repeat Simple_repeat 1 28 0 2210 107 3 3 chr12 132339525 132339686 -11942803 - AluSx SINE Alu -14 298 135 2390 43 20 10 chr12 132339686 132339987 -11942502 - AluY SINE Alu -7 304 1 2210 107 3 3 chr12 132339987 132340123 -11942366 - AluSx SINE Alu -176 136 1 2435 105 0 0 chr12 132340135 132340440 -11942049 - AluSq SINE Alu -8 305 1 319 143 14 14 chr12 132340748 132340818 -11941671 + GA-rich Low_complexity Low_complexity 3 72 0 1966 144 10 26 chr12 132341099 132341404 -11941085 - AluSq SINE Alu -13 300 1 2077 90 7 11 chr12 132341412 132341690 -11940799 - AluSq SINE Alu -8 305 29 253 310 127 28 chr12 132341705 132341847 -11940642 - L2 LINE L2 -89 3183 3028 2596 63 0 19 chr12 132342086 132342403 -11940086 - AluY SINE Alu 0 311 1 236 167 0 19 chr12 132342425 132342479 -11940010 + C-rich Low_complexity Low_complexity 2 54 0 1685 156 11 8 chr12 132342492 132342755 -11939734 - AluJb SINE Alu -36 276 13 2221 101 7 17 chr12 132343426 132343722 -11938767 - AluSx SINE Alu -19 293 1 2412 76 10 0 chr12 132343734 132344036 -11938453 - AluSq SINE Alu -8 305 1 240 183 49 24 chr12 132344237 132344319 -11938170 + CT-rich Low_complexity Low_complexity 5 88 0 197 364 0 0 chr12 132344699 132344765 -11937724 + MIR SINE MIR 186 251 -11 2173 102 0 59 chr12 132345149 132345472 -11937017 - AluY SINE Alu -7 304 1 358 176 162 0 chr12 132345472 132345546 -11936943 - FLAM_A SINE Alu -10 123 38 194 61 82 20 chr12 132345572 132345621 -11936868 + CT-rich Low_complexity Low_complexity 4 55 0 1950 173 0 3 chr12 132345623 132345935 -11936554 - AluJo SINE Alu -1 311 1 2116 111 7 4 chr12 132345970 132346270 -11936219 + AluSx SINE Alu 1 301 0 2144 117 10 3 chr12 132346605 132346904 -11935585 - AluSx SINE Alu -11 301 1 270 295 0 0 chr12 132346920 132346998 -11935491 - L1ME LINE L1 -349 5772 5695 21 0 0 0 chr12 132347655 132347676 -11934813 + AT_rich Low_complexity Low_complexity 1 21 0 372 43 0 0 chr12 132347926 132347972 -11934517 + (TA)n Simple_repeat Simple_repeat 2 47 0 1953 152 3 0 chr12 132347972 132348262 -11934227 - AluJb SINE Alu -21 291 1 236 70 47 0 chr12 132348262 132348305 -11934184 - L1MC2 LINE L1 -15 6329 6285 2061 121 3 35 chr12 132348306 132348620 -11933869 + AluSc SINE Alu 1 304 -5 2302 93 3 0 chr12 132349727 132350017 -11932472 - AluSx SINE Alu -15 297 7 621 217 132 62 chr12 132350291 132350549 -11931940 + LTR33 LTR ERVL 131 406 -115 210 37 0 0 chr12 132350564 132350591 -11931898 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2231 102 0 3 chr12 132350593 132350877 -11931612 - AluSc SINE Alu -26 283 1 1037 92 0 0 chr12 132350877 132351007 -11931482 - AluSq/x SINE Alu -177 136 7 305 306 216 36 chr12 132351496 132351653 -11930836 - L2 LINE L2 -81 3191 3064 2024 111 46 26 chr12 132351653 132351959 -11930530 - AluSx SINE Alu 0 312 1 305 306 216 36 chr12 132351959 132352112 -11930377 - L2 LINE L2 -208 3064 2940 504 0 0 0 chr12 132352112 132352168 -11930321 + (TG)n Simple_repeat Simple_repeat 1 56 0 305 306 216 36 chr12 132352168 132352430 -11930059 - L2 LINE L2 -332 2940 2510 777 188 0 0 chr12 132352607 132352740 -11929749 - FLAM_C SINE Alu 0 143 11 609 272 102 25 chr12 132352762 132353086 -11929403 - L1MC4 LINE L1 -61 7981 7633 2065 143 27 0 chr12 132353093 132353394 -11929095 - AluSx SINE Alu -3 309 1 781 188 0 8 chr12 132353407 132353535 -11928954 - FLAM_C SINE Alu -3 130 4 242 239 44 62 chr12 132353634 132353747 -11928742 - L1MD3 LINE L1 -1 8041 7907 365 170 88 176 chr12 132353757 132353826 -11928663 - L1MC4 LINE L1 -76 7966 7893 2342 95 0 7 chr12 132353826 132354122 -11928367 - AluSx SINE Alu -18 294 1 365 170 88 176 chr12 132354122 132354139 -11928350 - L1MC4 LINE L1 -149 7893 7876 2204 120 0 0 chr12 132354139 132354431 -11928058 - AluSc SINE Alu -17 292 1 365 170 88 176 chr12 132354431 132354525 -11927964 - L1MC4 LINE L1 -166 7876 7801 626 140 0 28 chr12 132354563 132354670 -11927819 - AluSg/x SINE Alu -3 309 206 676 140 6 107 chr12 132354761 132354939 -11927550 + L1MB7 LINE L1 6008 6167 -17 1680 172 24 14 chr12 132354947 132355238 -11927251 + AluJo SINE Alu 1 294 -18 267 169 51 0 chr12 132355293 132355352 -11927137 + U7 snRNA snRNA 2 63 0 2408 77 3 7 chr12 132355369 132355668 -11926821 - AluSp SINE Alu -15 298 1 393 281 274 29 chr12 132355727 132356414 -11926075 - L2 LINE L2 -37 3276 2439 1967 143 0 33 chr12 132356504 132356811 -11925678 - AluJo SINE Alu -15 297 1 539 320 102 7 chr12 132356912 132357215 -11925274 - L1MC4a LINE L1 -1982 5826 5495 2411 89 0 7 chr12 132357273 132357575 -11924914 - AluSc SINE Alu -9 300 1 24 0 0 0 chr12 132357591 132357615 -11924874 + AT_rich Low_complexity Low_complexity 1 24 0 712 207 0 0 chr12 132357616 132357732 -11924757 - FLAM_C SINE Alu -25 118 3 1587 125 61 48 chr12 132357742 132358053 -11924436 - L1MB5 LINE L1 0 6174 5860 2096 125 0 22 chr12 132358071 132358390 -11924099 - AluSx SINE Alu 0 312 1 2076 89 33 26 chr12 132358392 132358696 -11923793 - AluSx SINE Alu -6 306 1 286 235 152 15 chr12 132359347 132359479 -11923010 + L1ME4a LINE L1 5969 6118 -3 2464 53 0 10 chr12 132359484 132359787 -11922702 - AluY SINE Alu -11 300 1 2134 127 7 0 chr12 132361025 132361316 -11921173 - AluSx SINE Alu -18 294 2 2119 126 0 16 chr12 132361919 132362228 -11920261 + AluJo SINE Alu 1 304 -8 337 264 106 66 chr12 132362607 132362834 -11919655 - L2 LINE L2 -344 2970 2735 181 267 27 40 chr12 132363000 132363075 -11919414 - L2 LINE L2 -924 2390 2317 1316 126 5 5 chr12 132363230 132363420 -11919069 - AluSx SINE Alu -122 190 1 246 98 0 0 chr12 132363610 132363651 -11918838 - L1MB7 LINE L1 -19 6165 6125 287 158 0 0 chr12 132363654 132363711 -11918778 - L1MB2 LINE L1 0 6171 6115 2187 99 0 0 chr12 132363711 132363984 -11918505 - AluSx SINE Alu -39 273 1 389 239 64 9 chr12 132364632 132364741 -11917748 - MIR SINE MIR -74 188 74 1026 266 146 17 chr12 132365376 132365794 -11916695 - L2 LINE L2 0 3313 2842 205 219 98 138 chr12 132365813 132365899 -11916590 - L2 LINE L2 -580 2734 2653 1850 157 0 33 chr12 132365899 132366204 -11916285 + AluJo SINE Alu 1 295 -17 205 219 98 138 chr12 132366204 132366240 -11916249 - L2 LINE L2 -661 2653 2617 1665 185 18 0 chr12 132367198 132367474 -11915015 - AluJo SINE Alu -31 281 1 957 83 8 30 chr12 132367493 132367626 -11914863 - FLAM_C SINE Alu -10 133 4 953 168 5 8 chr12 132367641 132368011 -11914478 - L1MC3 LINE L1 0 7785 7366 408 246 51 25 chr12 132368385 132368503 -11913986 + MER5C DNA MER1_type 1 121 -203 1748 140 49 21 chr12 132368545 132368830 -11913659 + AluJo SINE Alu 1 293 -19 1717 195 99 0 chr12 132369446 132369820 -11912669 - MLT1C LTR MaLR -4 463 53 295 240 70 20 chr12 132370093 132370193 -11912296 + L2 LINE L2 1871 1975 -1339 551 200 100 0 chr12 132370227 132370367 -11912122 - L1MB7 LINE L1 -273 5911 5758 1879 184 0 7 chr12 132370370 132370679 -11911810 - AluJo SINE Alu -5 307 1 1122 157 0 43 chr12 132370684 132370898 -11911591 - AluJb SINE Alu 0 310 105 359 188 0 0 chr12 132370901 132370970 -11911519 + T-rich Low_complexity Low_complexity 1 69 0 342 311 91 13 chr12 132371002 132371280 -11911209 - HAL1 LINE L1 -1231 3184 1016 2170 97 13 27 chr12 132371470 132371768 -11910721 + AluSx SINE Alu 1 294 -18 217 326 35 23 chr12 132371918 132372004 -11910485 + L2 LINE L2 2672 2758 -556 207 0 0 0 chr12 132373299 132373322 -11909167 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 183 80 0 0 chr12 132373652 132373677 -11908812 + (CA)n Simple_repeat Simple_repeat 2 26 0 544 254 74 84 chr12 132373696 132373788 -11908701 - L1ME4a LINE L1 -223 5898 5807 2140 105 7 3 chr12 132373788 132374094 -11908395 - AluSq SINE Alu 0 313 7 1865 168 0 0 chr12 132374099 132374403 -11908086 - AluJb SINE Alu -8 304 1 544 254 74 84 chr12 132374403 132374697 -11907792 - L1ME4a LINE L1 -318 5803 5510 1012 184 9 0 chr12 132374864 132375201 -11907288 - L1MB5 LINE L1 -9 6165 5770 2062 128 3 0 chr12 132375800 132376098 -11906391 + AluSx SINE Alu 1 299 -13 2233 81 3 31 chr12 132376172 132376493 -11905996 - AluSp SINE Alu -1 312 1 305 228 0 0 chr12 132376912 132376969 -11905520 - L2 LINE L2 -5 3267 3211 237 147 0 0 chr12 132377128 132377162 -11905327 - Charlie5 DNA MER1_type -2414 198 165 1652 209 14 3 chr12 132377162 132377520 -11904969 - L1 LINE L1 -1504 4642 4281 1733 144 14 3 chr12 132377565 132377850 -11904639 - AluJb SINE Alu -24 288 1 582 235 56 139 chr12 132377907 132378100 -11904389 + L2 LINE L2 2521 2729 -585 2238 97 0 7 chr12 132378100 132378410 -11904079 - AluSc SINE Alu -1 308 1 2269 96 0 10 chr12 132378419 132378733 -11903756 - AluY SINE Alu 0 311 1 582 235 56 139 chr12 132378733 132378852 -11903637 + L2 LINE L2 2737 2816 -498 811 221 145 28 chr12 132378853 132379142 -11903347 - L1ME1 LINE L1 -170 5996 5674 * 857 226 77 96 chr12 132379134 132379353 -11903136 - L1ME LINE L1 -4758 1503 1281 1518 169 71 8 chr12 132379353 132379648 -11902841 - AluJb SINE Alu 0 312 1 857 226 77 96 chr12 132379648 132380101 -11902388 - L1ME LINE L1 -4980 1281 805 596 132 104 9 chr12 132380222 132380356 -11902133 - FLAM_C SINE Alu 0 144 1 191 36 36 0 chr12 132381147 132381175 -11901314 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1995 131 7 0 chr12 132381207 132381505 -11900984 + AluSx SINE Alu 1 300 -12 29 0 0 0 chr12 132381660 132381689 -11900800 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr12 132382024 132382047 -11900442 + AT_rich Low_complexity Low_complexity 1 23 0 729 186 0 8 chr12 132382109 132382233 -11900256 - FLAM_A SINE Alu -10 123 1 1629 160 0 41 chr12 132382367 132382688 -11899801 + AluJo SINE Alu 1 309 0 2706 170 74 27 chr12 132382696 132383249 -11899240 + L1MB5 LINE L1 5596 6174 0 2108 115 0 0 chr12 132383323 132383618 -11898871 - AluSx SINE Alu -11 301 7 1848 172 0 0 chr12 132383623 132383926 -11898563 - AluJb SINE Alu -9 303 1 572 261 60 53 chr12 132383935 132384219 -11898270 - L1ME LINE L1 -326 5795 5510 1031 181 9 0 chr12 132384387 132384724 -11897765 - L1MB5 LINE L1 -9 6165 5770 1995 138 3 0 chr12 132385323 132385621 -11896868 + AluSx SINE Alu 1 299 -13 488 82 0 35 chr12 132385726 132385811 -11896678 + AluJ/FRAM SINE Alu 224 305 -7 2147 109 0 7 chr12 132385830 132386134 -11896355 - AluSq SINE Alu -11 302 1 856 266 52 16 chr12 132386323 132386575 -11895914 + MIR SINE MIR 2 262 0 180 0 0 0 chr12 132386888 132386908 -11895581 + (TAA)n Simple_repeat Simple_repeat 2 21 0 284 291 86 43 chr12 132386923 132387040 -11895449 - MIR SINE MIR -126 136 15 1623 159 54 0 chr12 132388748 132389043 -11893446 + AluJo SINE Alu 1 311 -1 24 0 0 0 chr12 132389412 132389436 -11893053 + AT_rich Low_complexity Low_complexity 1 24 0 430 237 61 30 chr12 132390204 132390335 -11892154 + L1MC/D LINE L1 5389 5523 -2285 2220 101 0 3 chr12 132390686 132390993 -11891496 - AluSx SINE Alu -6 306 1 1817 157 0 7 chr12 132391170 132391464 -11891025 - AluSx SINE Alu -19 293 2 2122 100 14 0 chr12 132391477 132391767 -11890722 - AluSx SINE Alu -18 294 1 25 0 0 0 chr12 132391779 132391804 -11890685 + AT_rich Low_complexity Low_complexity 1 25 0 572 231 18 62 chr12 132391821 132391850 -11890639 + L1MB3 LINE L1 5117 5146 -1000 1913 115 44 0 chr12 132391850 132392146 -11890343 + AluJb SINE Alu 3 311 -1 572 231 18 62 chr12 132392146 132392237 -11890252 + L1MB3 LINE L1 5146 5225 -921 1776 165 3 25 chr12 132392237 132392553 -11889936 + AluJo SINE Alu 2 310 -2 572 231 18 62 chr12 132392553 132392656 -11889833 + L1MB3 LINE L1 5225 5331 -815 1105 61 0 0 chr12 132392656 132392788 -11889701 + AluY SINE Alu 1 132 -179 2283 85 0 25 chr12 132392791 132393110 -11889379 + AluY SINE Alu 1 311 0 1264 142 75 57 chr12 132393268 132393301 -11889188 + L1MB3 LINE L1 5317 5348 -823 1908 131 3 13 chr12 132393301 132393614 -11888875 - AluJb SINE Alu -2 310 1 1264 142 75 57 chr12 132393614 132393862 -11888627 + L1MB3 LINE L1 5348 5603 -568 1590 141 52 4 chr12 132393868 132394195 -11888294 + AluJb SINE Alu 2 341 0 193 182 0 0 chr12 132394199 132394232 -11888257 + L2 LINE L2 2436 2468 -846 2134 102 14 0 chr12 132394249 132394544 -11887945 + AluSx SINE Alu 1 299 -13 3047 116 16 61 chr12 132394580 132394885 -11887604 + L1MB3 LINE L1 5599 5916 -267 1781 130 0 0 chr12 132394885 132395171 -11887318 + AluSx SINE Alu 22 307 0 3047 116 16 61 chr12 132395171 132395430 -11887059 + L1MB3 LINE L1 5916 6138 -45 2219 82 7 0 chr12 132395430 132395724 -11886765 - AluSq SINE Alu -17 296 1 3047 116 16 61 chr12 132395724 132395767 -11886722 + L1MB3 LINE L1 6138 6181 -2 2312 77 0 3 chr12 132395877 132396176 -11886313 - AluSq SINE Alu -15 298 1 274 231 31 31 chr12 132396276 132396341 -11886148 + MIR SINE MIR 91 148 -60 963 165 6 0 chr12 132396503 132396673 -11885816 - FRAM SINE Alu -5 171 1 2173 99 0 0 chr12 132396683 132396976 -11885513 - AluY SINE Alu -18 293 1 473 138 0 6 chr12 132397378 132397522 -11884967 + AluJo SINE Alu 85 309 -3 262 281 168 20 chr12 132397553 132397729 -11884760 - L2 LINE L2 -223 3090 2882 2027 176 22 6 chr12 132397783 132398142 -11884347 + MLT1A1 LTR MaLR 1 365 0 205 320 107 0 chr12 132398760 132398835 -11883654 - L2 LINE L2 0 3313 3231 188 344 52 0 chr12 132399016 132399112 -11883377 + MIR SINE MIR 79 179 -83 941 156 6 22 chr12 132399112 132399287 -11883202 + L1MB7 LINE L1 5654 5824 -342 2288 63 0 0 chr12 132399287 132399604 -11882885 + AluY SINE Alu 1 311 0 941 156 6 22 chr12 132399604 132399622 -11882867 + L1MB7 LINE L1 5824 5841 -325 2104 111 3 0 chr12 132399703 132400000 -11882489 + AluSx SINE Alu 3 300 -12 287 304 22 11 chr12 132400134 132400226 -11882263 + MIR SINE MIR 60 152 -110 477 234 241 0 chr12 132400239 132400380 -11882109 + MER5A DNA MER1_type 9 183 -6 916 130 0 0 chr12 132400401 132400532 -11881957 + FLAM_C SINE Alu 2 132 -11 506 248 14 35 chr12 132400589 132400730 -11881759 + MIR SINE MIR 123 260 -2 252 241 0 19 chr12 132401360 132401414 -11881075 - L2 LINE L2 -2 3311 3259 570 180 7 65 chr12 132401524 132401663 -11880826 + MIR SINE MIR 45 175 -87 221 283 0 0 chr12 132401672 132401725 -11880764 - L2 LINE L2 -12 3301 3249 491 216 184 53 chr12 132401760 132401950 -11880539 - MIR SINE MIR 0 262 48 546 229 34 120 chr12 132401979 132402246 -11880243 + L1MC4 LINE L1 7406 7649 -393 1301 128 0 5 chr12 132402246 132402434 -11880055 + AluSx SINE Alu 1 187 -125 533 123 0 12 chr12 132402434 132402515 -11879974 - AluS SINE Alu -229 84 5 781 185 0 8 chr12 132402569 132402699 -11879790 + FLAM_C SINE Alu 4 132 -1 1975 148 0 0 chr12 132402718 132403022 -11879467 + AluSx SINE Alu 1 304 -8 661 266 86 34 chr12 132403026 132403375 -11879114 + L1MC4 LINE L1 7613 7979 -63 311 172 0 52 chr12 132403405 132403463 -11879026 + AluS SINE Alu 15 69 -234 * 340 61 0 0 chr12 132403456 132403505 -11878984 + Alu SINE Alu 252 300 0 2403 84 0 0 chr12 132403510 132403821 -11878668 + AluY SINE Alu 1 311 0 1554 174 3 24 chr12 132403830 132404117 -11878372 + AluJo SINE Alu 1 281 -31 1227 169 41 102 chr12 132404119 132404360 -11878129 + L1MB7 LINE L1 5816 6070 -114 756 164 0 0 chr12 132404360 132404476 -11878013 + AluJo/FLAM SINE Alu 1 116 -186 2231 89 3 7 chr12 132404477 132404781 -11877708 - AluSx SINE Alu -9 303 1 1227 169 41 102 chr12 132404781 132404880 -11877609 + L1MB7 LINE L1 6069 6137 -47 484 34 0 0 chr12 132404880 132404939 -11877550 - AluY SINE Alu -14 296 238 990 97 0 0 chr12 132404942 132405076 -11877413 - AluSq/x SINE Alu -179 134 1 846 151 21 108 chr12 132405085 132405271 -11877218 - AluJb SINE Alu -22 290 121 273 270 16 0 chr12 132405462 132405525 -11876964 + L2 LINE L2 3207 3270 -2 399 322 70 48 chr12 132405910 132406180 -11876309 - L2 LINE L2 -3 3269 2994 2122 80 3 23 chr12 132406331 132406465 -11876024 + AluSc SINE Alu 1 136 -173 2173 68 4 0 chr12 132406465 132406776 -11875713 + AluY SINE Alu 1 312 0 2122 80 3 23 chr12 132406776 132406942 -11875547 + AluSc SINE Alu 136 296 -13 488 297 29 17 chr12 132407004 132407179 -11875310 - Charlie8 DNA MER1_type -2176 241 65 201 264 111 0 chr12 132407447 132407519 -11874970 + L2 LINE L2 3233 3312 -1 840 126 0 0 chr12 132407657 132407784 -11874705 + FLAM_C SINE Alu 1 127 -16 1208 88 73 54 chr12 132407800 132407928 -11874561 + AluSq SINE Alu 1 136 -177 1819 119 56 14 chr12 132407928 132408214 -11874275 + AluSx SINE Alu 1 298 -14 1208 88 73 54 chr12 132408214 132408289 -11874200 + AluSq SINE Alu 136 208 -105 384 115 0 0 chr12 132408319 132408371 -11874118 - Alu SINE Alu -249 53 2 1934 89 0 15 chr12 132408727 132408998 -11873491 + AluSx SINE Alu 1 267 -45 239 118 0 0 chr12 132408998 132409032 -11873457 + MER82 DNA MER2_type 167 200 -453 2299 61 3 14 chr12 132409518 132409813 -11872676 - AluY SINE Alu -19 292 1 1578 154 3 61 chr12 132409915 132410226 -11872263 + AluJo SINE Alu 5 297 -15 3517 183 11 22 chr12 132410655 132411299 -11871190 + MER82 DNA MER2_type 8 644 -9 25 0 0 0 chr12 132412158 132412183 -11870306 + AT_rich Low_complexity Low_complexity 1 25 0 811 164 8 0 chr12 132412196 132412324 -11870165 + FLAM_C SINE Alu 5 133 -10 820 115 15 23 chr12 132412328 132412458 -11870031 + FRAM SINE Alu 1 40 0 2015 97 31 0 chr12 132412812 132413100 -11869389 + AluSx SINE Alu 1 297 -15 602 268 82 5 chr12 132413158 132413352 -11869137 + MIR SINE MIR 50 258 -4 449 178 51 51 chr12 132414229 132414274 -11868215 - MER53 DNA DNA -69 120 76 2219 115 0 0 chr12 132414274 132414587 -11867902 - AluSq SINE Alu 0 313 1 449 178 51 51 chr12 132414587 132414659 -11867830 - MER53 DNA DNA -112 77 3 348 272 99 25 chr12 132414665 132414827 -11867662 + MIR SINE MIR 89 262 0 2538 47 0 0 chr12 132415214 132415515 -11866974 + AluY SINE Alu 1 301 -10 283 240 147 0 chr12 132416622 132416697 -11865792 + L2 LINE L2 3225 3310 -3 1042 222 4 21 chr12 132416946 132417185 -11865304 + AluJo SINE Alu 1 235 -77 1669 141 13 42 chr12 132417637 132417943 -11864546 + AluJb SINE Alu 1 297 -15 1939 116 28 0 chr12 132418024 132418309 -11864180 - AluSx SINE Alu -19 293 1 213 250 193 45 chr12 132418580 132418668 -11863821 + L2 LINE L2 3172 3272 0 441 190 17 9 chr12 132419025 132419141 -11863348 + CT-rich Low_complexity Low_complexity 2 118 0 480 77 0 0 chr12 132419154 132419219 -11863270 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 562 286 48 29 chr12 132419377 132419587 -11862902 + MIR SINE MIR 33 246 -16 340 229 13 48 chr12 132420052 132420166 -11862323 - MIR SINE MIR -56 152 48 1058 292 159 18 chr12 132420340 132421300 -11861189 - L2 LINE L2 -38 3275 2180 234 128 0 0 chr12 132421786 132421825 -11860664 + (CCA)n Simple_repeat Simple_repeat 1 39 0 306 0 0 0 chr12 132421937 132421971 -11860518 + (TTG)n Simple_repeat Simple_repeat 3 36 0 522 169 72 102 chr12 132422357 132422415 -11860074 - L1MB5 LINE L1 0 6174 6116 1974 83 32 22 chr12 132422415 132422721 -11859768 + AluSx SINE Alu 1 309 0 522 169 72 102 chr12 132422721 132422827 -11859662 - L1MB5 LINE L1 -58 6116 6014 792 272 129 53 chr12 132422906 132423598 -11858891 + L1ME4a LINE L1 5296 6047 -74 1582 169 115 0 chr12 132423600 132423879 -11858610 - AluJb SINE Alu -1 311 1 878 78 0 16 chr12 132423930 132424059 -11858430 + (TCCCC)n Simple_repeat Simple_repeat 5 131 0 1979 115 0 42 chr12 132424072 132424360 -11858129 - AluSx SINE Alu -32 280 5 2418 95 0 0 chr12 132424379 132424675 -11857814 - AluSg SINE Alu -14 296 1 2474 58 7 0 chr12 132425365 132425657 -11856832 + AluY SINE Alu 1 294 -17 227 172 17 86 chr12 132426158 132426216 -11856273 - L2 LINE L2 -5 3308 3255 399 322 9 84 chr12 132426540 132426798 -11855691 + MIR SINE MIR 6 239 -23 1562 184 48 17 chr12 132427428 132427721 -11854768 - AluJo SINE Alu -10 302 1 355 315 0 18 chr12 132428304 132428415 -11854074 + MIR SINE MIR 37 145 -63 189 339 0 0 chr12 132428452 132428511 -11853978 - L2 LINE L2 -6 3266 3208 237 333 38 45 chr12 132428728 132428860 -11853629 - MLT1K LTR MaLR -181 407 277 462 292 48 24 chr12 132429412 132429621 -11852868 - MIR SINE MIR -2 260 47 1827 147 41 49 chr12 132429698 132430065 -11852424 + THE1B LTR MaLR 1 364 0 11604 77 10 9 chr12 132430065 132430433 -11852056 + THE1B-int LTR MaLR 1 367 -1213 2390 91 0 3 chr12 132430433 132430731 -11851758 - AluY SINE Alu -14 297 1 11604 77 10 9 chr12 132430731 132431940 -11850549 + THE1B-int LTR MaLR 367 1580 0 2055 143 36 31 chr12 132431940 132432297 -11850192 + THE1B LTR MaLR 1 359 -5 584 268 56 6 chr12 132432309 132432488 -11850001 - MIR SINE MIR -62 200 13 2241 125 0 0 chr12 132433947 132434252 -11848237 - AluSx SINE Alu -7 305 1 184 305 84 32 chr12 132434254 132434349 -11848140 + MIR SINE MIR 162 261 -1 1620 169 16 23 chr12 132434567 132434874 -11847615 + AluJb SINE Alu 1 305 -7 1754 201 24 0 chr12 132434949 132435288 -11847201 - MER7A DNA MER2_type -1 345 1 2333 86 3 3 chr12 132435325 132435615 -11846874 + AluSx SINE Alu 6 295 -17 2521 73 0 13 chr12 132435617 132435932 -11846557 + AluY SINE Alu 1 311 0 364 250 32 73 chr12 132435963 132436054 -11846435 - L1ME4a LINE L1 -199 5922 5836 2696 36 0 7 chr12 132436054 132436359 -11846130 + AluY SINE Alu 1 303 -8 364 250 32 73 chr12 132436359 132436391 -11846098 - L1ME4a LINE L1 -285 5836 5804 528 298 117 43 chr12 132436412 132436918 -11845571 - L1ME4a LINE L1 -42 6079 5537 2530 90 0 3 chr12 132437501 132437812 -11844677 - AluSx SINE Alu -2 310 1 278 314 0 0 chr12 132438202 132438272 -11844217 + MIR SINE MIR 92 161 -101 250 114 0 0 chr12 132438353 132438397 -11844092 - AluJb SINE Alu 0 302 259 1153 163 5 0 chr12 132438400 132438590 -11843899 - AluJb SINE Alu -117 195 5 331 216 30 146 chr12 132439062 132439132 -11843357 - L1MC5 LINE L1 -33 7928 7852 1529 175 4 16 chr12 132439132 132439384 -11843105 + AluJb SINE Alu 1 249 -63 331 216 30 146 chr12 132439384 132439512 -11842977 - L1MC5 LINE L1 -109 7852 7753 741 260 78 9 chr12 132439732 132439951 -11842538 + MIR SINE MIR 29 262 0 1072 136 0 13 chr12 132440156 132440310 -11842179 - AluJb SINE Alu -17 295 144 2336 95 7 0 chr12 132440328 132440624 -11841865 - AluSp SINE Alu -15 298 1 1349 171 35 56 chr12 132440784 132440902 -11841587 + AluJo SINE Alu 19 138 -174 1667 159 38 31 chr12 132440902 132441191 -11841298 + AluJo SINE Alu 1 291 -21 1349 171 35 56 chr12 132441191 132441359 -11841130 + AluJo SINE Alu 138 299 -13 1991 94 21 35 chr12 132442239 132442553 -11839936 - AluY SINE Alu 0 310 1 246 224 69 0 chr12 132442876 132442934 -11839555 + L2 LINE L2 3211 3272 0 229 259 0 0 chr12 132443140 132443198 -11839291 + L1ME LINE L1 5595 5652 -469 2373 89 0 7 chr12 132443198 132443501 -11838988 + AluSx SINE Alu 1 301 -11 33 0 0 0 chr12 132443558 132443591 -11838898 + AT_rich Low_complexity Low_complexity 1 33 0 603 167 0 0 chr12 132443591 132443687 -11838802 - FLAM_A SINE Alu -27 115 20 1554 179 16 56 chr12 132443819 132443942 -11838547 + AluJo SINE Alu 1 127 -185 2028 132 10 3 chr12 132443942 132444238 -11838251 - AluSx SINE Alu -14 298 1 2081 82 16 26 chr12 132444243 132444546 -11837943 - AluY SINE Alu -11 300 1 1554 179 16 56 chr12 132444546 132444735 -11837754 + AluJo SINE Alu 131 306 -6 2407 93 0 0 chr12 132445382 132445683 -11836806 + AluSq SINE Alu 3 303 -10 246 327 39 0 chr12 132445715 132445819 -11836670 - MIR SINE MIR -134 128 21 226 250 42 42 chr12 132445880 132445976 -11836513 + HAL1b LINE L1 1238 1333 -15 61 15 0 0 chr12 132446031 132446099 -11836390 + AT_rich Low_complexity Low_complexity 1 68 0 2287 173 42 24 chr12 132446163 132446660 -11835829 - L1MB7 LINE L1 0 6184 5679 2240 115 30 0 chr12 132446678 132446982 -11835507 - AluSq SINE Alu 0 313 1 452 234 94 0 chr12 132447976 132448104 -11834385 - MER115 DNA AcHobo -22 671 532 597 253 77 10 chr12 132448242 132448436 -11834053 - MER115 DNA AcHobo -364 329 123 199 272 250 0 chr12 132448696 132448788 -11833701 + MER5B DNA MER1_type 60 174 -4 210 71 0 0 chr12 132449105 132449133 -11833356 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 334 273 182 15 chr12 132449135 132449267 -11833222 - L2 LINE L2 0 3272 3119 563 231 69 31 chr12 132449378 132449538 -11832951 + MER5A DNA MER1_type 1 166 -23 443 188 97 104 chr12 132449571 132449658 -11832831 + MER5B DNA MER1_type 4 91 -87 2049 123 7 7 chr12 132449658 132449950 -11832539 + AluSx SINE Alu 1 292 -20 443 188 97 104 chr12 132449950 132450006 -11832483 + MER5B DNA MER1_type 91 146 -32 27 0 0 26 chr12 132450488 132450511 -11831978 + AT_rich Low_complexity Low_complexity 1 24 -13 1810 132 36 36 chr12 132450511 132450815 -11831674 - AluJb SINE Alu -8 304 1 27 0 0 26 chr12 132450815 132450829 -11831660 + AT_rich Low_complexity Low_complexity 24 37 0 516 16 0 0 chr12 132450890 132450951 -11831538 + (TCTCCC)n Simple_repeat Simple_repeat 1 61 0 7846 21 6 329 chr12 132450951 132452915 -11829574 + SVA Other Other 57 1386 0 770 309 27 8 chr12 132452925 132453181 -11829308 - MIR SINE MIR 0 262 2 1664 143 73 0 chr12 132453450 132453722 -11828767 - AluJo SINE Alu -20 292 1 413 266 92 0 chr12 132453777 132453950 -11828539 + L1ME4a LINE L1 5863 6051 -70 28 0 0 0 chr12 132454592 132454620 -11827869 + AT_rich Low_complexity Low_complexity 1 28 0 932 200 0 6 chr12 132455168 132455328 -11827161 - AluJb SINE Alu -153 159 1 189 0 0 0 chr12 132455338 132455359 -11827130 + (A)n Simple_repeat Simple_repeat 1 21 0 304 198 135 0 chr12 132455364 132455459 -11827030 + Alu SINE Alu 244 296 -6 3053 191 34 64 chr12 132455460 132455689 -11826800 - L1M4 LINE L1 -1605 4541 4307 2099 141 3 0 chr12 132455689 132455988 -11826501 - AluSq SINE Alu -13 300 1 1897 150 7 10 chr12 132455996 132456289 -11826200 - AluJo SINE Alu -20 292 1 3053 191 34 64 chr12 132456289 132456370 -11826119 - L1M4 LINE L1 -1846 4300 4218 180 0 0 0 chr12 132456370 132456390 -11826099 + (TA)n Simple_repeat Simple_repeat 2 21 0 3053 191 34 64 chr12 132456390 132456518 -11825971 - L1M4 LINE L1 -1928 4218 4088 2027 142 0 3 chr12 132456518 132456820 -11825669 + AluJb SINE Alu 11 311 -1 3053 191 34 64 chr12 132456820 132457233 -11825256 - L1M4 LINE L1 -2058 4088 3705 612 124 0 80 chr12 132457274 132457387 -11825102 - AluSx SINE Alu -18 292 189 1077 109 0 0 chr12 132457394 132457532 -11824957 - AluSx SINE Alu -169 143 6 207 278 0 69 chr12 132458092 132458164 -11824325 + MIR SINE MIR 119 185 -77 2450 91 13 0 chr12 132458171 132458479 -11824010 + AluSx SINE Alu 1 312 0 772 150 0 8 chr12 132458810 132458937 -11823552 + FLAM_C SINE Alu 1 126 -7 2487 87 3 0 chr12 132458947 132459256 -11823233 - AluSx SINE Alu -2 310 1 1491 174 0 93 chr12 132459841 132459973 -11822516 + AluJo SINE Alu 1 144 -158 2233 118 0 0 chr12 132459973 132460260 -11822229 + AluSq SINE Alu 1 287 -26 1491 174 0 93 chr12 132460260 132460460 -11822029 + AluJo SINE Alu 144 302 0 2011 122 25 4 chr12 132461197 132461476 -11821013 + AluJo SINE Alu 1 285 -27 1129 125 0 40 chr12 132463542 132463718 -11818771 - AluSg/x SINE Alu -10 300 132 2149 85 3 108 chr12 132463718 132464059 -11818430 - AluSx SINE Alu -7 305 1 215 259 223 36 chr12 132464590 132464756 -11817733 + MIR SINE MIR 66 262 0 2320 89 34 0 chr12 132464937 132465231 -11817258 - AluSx SINE Alu -10 302 1 1479 237 9 3 chr12 132465310 132465639 -11816850 - MER58B DNA MER1_type -8 333 3 1699 156 50 42 chr12 132465701 132465934 -11816555 + L1MD3 LINE L1 7626 7865 -130 1861 146 0 10 chr12 132465934 132466228 -11816261 + AluJb SINE Alu 1 291 -21 1699 156 50 42 chr12 132466228 132466353 -11816136 + L1MD3 LINE L1 7865 7987 -8 2276 76 27 0 chr12 132466353 132466654 -11815835 - AluY SINE Alu -2 309 1 2330 57 0 32 chr12 132467370 132467684 -11814805 + AluY SINE Alu 1 304 -7 1961 126 0 0 chr12 132468121 132468399 -11814090 + AluSx SINE Alu 23 300 -12 221 343 138 28 chr12 132468415 132468733 -11813756 - L2 LINE L2 -1 3312 2960 805 167 0 22 chr12 132468869 132469007 -11813482 + FLAM_C SINE Alu 2 136 -7 1598 178 7 20 chr12 132469287 132469423 -11813066 + AluJb SINE Alu 1 137 -175 2122 124 7 0 chr12 132469423 132469729 -11812760 + AluSx SINE Alu 1 308 -4 1598 178 7 20 chr12 132469729 132469890 -11812599 + AluJb SINE Alu 137 294 -18 411 296 122 11 chr12 132469914 132470103 -11812386 - LTR67 LTR ERVL -1 556 347 1517 171 39 26 chr12 132470194 132470499 -11811990 + L1MB7 LINE L1 5423 5731 -447 518 159 32 119 chr12 132470508 132470634 -11811855 + AluJb SINE Alu 3 117 -195 270 0 0 0 chr12 132470639 132470669 -11811820 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2274 104 0 0 chr12 132470672 132470981 -11811508 + AluSx SINE Alu 1 309 -3 2305 174 46 7 chr12 132470982 132471420 -11811069 + L1MB7 LINE L1 5730 6184 0 564 288 20 13 chr12 132471782 132471935 -11810554 + MER63 DNA MER1_type 1 780 -282 239 260 231 0 chr12 132471947 132472051 -11810438 + MIR3 SINE MIR 38 165 -43 2578 133 12 77 chr12 132472540 132472595 -11809894 - Tigger3(Golem) DNA MER2_type -1 3027 2970 1641 166 10 14 chr12 132472595 132472884 -11809605 - AluJo SINE Alu -12 300 13 2578 133 12 77 chr12 132472884 132473325 -11809164 - Tigger3(Golem) DNA MER2_type -58 2970 2563 2336 90 3 0 chr12 132473328 132473640 -11808849 + AluSq SINE Alu 1 313 0 1462 159 48 17 chr12 132473644 132473939 -11808550 + AluJo SINE Alu 1 304 -8 990 135 19 0 chr12 132473939 132474095 -11808394 + AluJb SINE Alu 135 293 -19 536 191 191 0 chr12 132474137 132474252 -11808237 - Tigger3(Golem) DNA MER2_type -2888 141 5 482 208 67 87 chr12 132474269 132474323 -11808166 - MIR SINE MIR -21 241 187 2461 63 0 0 chr12 132474323 132474626 -11807863 - AluY SINE Alu -8 303 1 482 208 67 87 chr12 132474626 132474720 -11807769 - MIR SINE MIR -75 187 96 2161 121 0 13 chr12 132474767 132475082 -11807407 - AluSx SINE Alu -1 311 1 2399 71 0 23 chr12 132475390 132475700 -11806789 + AluY SINE Alu 1 303 -8 2364 72 0 0 chr12 132475700 132475992 -11806497 + AluY SINE Alu 1 292 -19 761 219 0 38 chr12 132476070 132476230 -11806259 + MER63 DNA MER1_type 1 780 -56 447 319 155 23 chr12 132476319 132476661 -11805828 + L1MEd LINE L1 512 898 -5221 579 248 91 15 chr12 132476714 132476912 -11805577 - MER102b DNA MER1_type -2 339 127 415 255 7 7 chr12 132476912 132477057 -11805432 + CT-rich Low_complexity Low_complexity 2 146 0 1536 153 0 4 chr12 132477063 132477312 -11805177 - AluJb SINE Alu -64 248 1 1849 179 59 16 chr12 132477320 132477762 -11804727 - L1MB5 LINE L1 0 6174 5712 224 167 21 0 chr12 132477896 132477944 -11804545 + CT-rich Low_complexity Low_complexity 2 50 0 1995 107 33 0 chr12 132477946 132478246 -11804243 - AluSg SINE Alu 0 310 1 2197 80 0 13 chr12 132478246 132478546 -11803943 - AluSx SINE Alu -16 296 1 22 0 0 0 chr12 132479688 132479710 -11802779 + GC_rich Low_complexity Low_complexity 1 22 0 441 115 0 0 chr12 132479779 132479857 -11802632 + (TG)n Simple_repeat Simple_repeat 1 78 0 21 57 0 0 chr12 132480055 132480090 -11802399 + GC_rich Low_complexity Low_complexity 1 35 0 48 118 0 0 chr12 132480112 132480384 -11802105 + GC_rich Low_complexity Low_complexity 1 272 0 23 54 0 0 chr12 132480425 132480462 -11802027 + GC_rich Low_complexity Low_complexity 1 37 0 227 239 11 33 chr12 132480496 132480588 -11801901 + C-rich Low_complexity Low_complexity 2 91 0 23 0 0 0 chr12 132480752 132480775 -11801714 + GC_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr12 132481931 132481957 -11800532 + GC_rich Low_complexity Low_complexity 1 26 0 850 110 26 84 chr12 132482516 132482707 -11799782 + MER53 DNA DNA 1 180 -9 1481 151 28 88 chr12 132483078 132483206 -11799283 + AluJo SINE Alu 1 135 -177 2320 70 3 10 chr12 132483206 132483519 -11798970 + AluY SINE Alu 1 311 0 2298 100 0 3 chr12 132483528 132483838 -11798651 + AluSx SINE Alu 3 311 -1 1481 151 28 88 chr12 132483838 132483850 -11798639 + AluJo SINE Alu 143 154 -158 2346 72 7 0 chr12 132483850 132484156 -11798333 + AluY SINE Alu 1 308 -3 1481 151 28 88 chr12 132484156 132484323 -11798166 + AluJo SINE Alu 154 300 -12 491 225 134 0 chr12 132485066 132485136 -11797353 - Charlie8 DNA MER1_type -149 192 133 207 0 0 0 chr12 132485136 132485159 -11797330 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 491 225 134 0 chr12 132485159 132485230 -11797259 - Charlie8 DNA MER1_type -208 133 32 994 148 0 0 chr12 132485261 132485416 -11797073 + AluJb SINE Alu 142 296 -16 2305 100 3 0 chr12 132485418 132485729 -11796760 + AluSx SINE Alu 1 312 0 429 351 40 18 chr12 132486481 132486706 -11795783 + MIR SINE MIR 32 261 -1 257 204 0 0 chr12 132486979 132487028 -11795461 + MIR SINE MIR 104 152 -56 212 233 178 0 chr12 132487670 132487760 -11794729 - L2 LINE L2 -646 2668 2563 260 276 69 26 chr12 132488374 132488490 -11793999 - MIR SINE MIR -126 136 16 1921 117 3 7 chr12 132488879 132489190 -11793299 - AluSx SINE Alu 0 310 1 415 329 75 9 chr12 132489302 132489515 -11792974 - MIR SINE MIR -15 247 21 261 318 66 14 chr12 132490483 132490637 -11791852 + MIR SINE MIR 62 223 -39 198 268 110 12 chr12 132490750 132490832 -11791657 + MER5A DNA MER1_type 48 137 -52 898 192 81 39 chr12 132490955 132491003 -11791486 - L1MB7 LINE L1 -2 6182 6138 1727 136 20 30 chr12 132491003 132491158 -11791331 - AluJo SINE Alu -13 299 144 197 81 0 27 chr12 132491158 132491195 -11791294 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2179 90 0 0 chr12 132491195 132491474 -11791015 - AluSc SINE Alu -30 279 1 1727 136 20 30 chr12 132491474 132491619 -11790870 - AluJo SINE Alu -166 146 1 898 192 81 39 chr12 132491619 132491804 -11790685 - L1MB7 LINE L1 -46 6138 5939 200 281 0 18 chr12 132491949 132492006 -11790483 + (CA)n Simple_repeat Simple_repeat 1 56 0 486 0 0 0 chr12 132492053 132492107 -11790382 + (TA)n Simple_repeat Simple_repeat 2 55 0 434 291 22 8 chr12 132492138 132492272 -11790217 - L1MC4a LINE L1 -1944 5864 5729 198 0 0 0 chr12 132492288 132492310 -11790179 + (A)n Simple_repeat Simple_repeat 1 22 0 2101 105 3 29 chr12 132492316 132492629 -11789860 + AluSg SINE Alu 1 305 -5 1853 138 3 3 chr12 132493688 132494003 -11788486 - AluSx SINE Alu 0 315 1 1081 177 0 6 chr12 132494112 132494287 -11788202 + FAM SINE Alu 1 174 -1 358 234 40 32 chr12 132494394 132494518 -11787971 - L1ME3A LINE L1 -35 6135 6011 1999 103 10 10 chr12 132494575 132494867 -11787622 - AluSg SINE Alu -18 292 1 340 277 136 43 chr12 132494884 132495119 -11787370 + MER102b DNA MER1_type 85 341 0 2158 99 0 10 chr12 132495406 132495531 -11786958 + AluSg SINE Alu 9 134 -176 2246 76 10 10 chr12 132495531 132495834 -11786655 + AluSp SINE Alu 5 307 -6 2158 99 0 10 chr12 132495834 132496001 -11786488 + AluSg SINE Alu 134 298 -12 2263 115 0 0 chr12 132496012 132496324 -11786165 + AluSx SINE Alu 1 312 0 518 215 28 96 chr12 132496557 132496734 -11785755 + MIR SINE MIR 33 197 -65 1561 150 24 65 chr12 132496755 132496887 -11785602 + AluJo SINE Alu 1 137 -175 2095 113 0 3 chr12 132496887 132497187 -11785302 + AluY SINE Alu 11 309 -2 1561 150 24 65 chr12 132497187 132497348 -11785141 + AluJo SINE Alu 137 282 -30 291 0 102 0 chr12 132497352 132497411 -11785078 + (TA)n Simple_repeat Simple_repeat 2 66 0 1946 124 17 3 chr12 132497434 132497724 -11784765 + AluSx SINE Alu 1 294 -18 777 171 0 0 chr12 132497745 132497862 -11784627 - FLAM_C SINE Alu -25 118 2 473 265 165 0 chr12 132497894 132498064 -11784425 - MIR SINE MIR -2 260 63 1917 142 3 7 chr12 132498112 132498422 -11784067 + AluSx SINE Alu 1 309 -3 331 320 34 14 chr12 132499062 132499209 -11783280 + MIR SINE MIR 94 243 -19 1916 153 3 0 chr12 132499346 132499640 -11782849 + AluJo SINE Alu 1 295 -17 1866 115 24 30 chr12 132499649 132499944 -11782545 + AluSx SINE Alu 1 293 -19 2023 109 20 3 chr12 132500236 132500530 -11781959 + AluSx SINE Alu 1 299 -13 368 279 62 54 chr12 132500573 132500938 -11781551 - L1MC5 LINE L1 -178 7849 7474 180 0 0 0 chr12 132501263 132501283 -11781206 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 1698 96 142 4 chr12 132501353 132501613 -11780876 + AluSx SINE Alu 1 296 -6 1668 171 13 10 chr12 132502090 132502394 -11780095 + AluJo SINE Alu 1 305 -7 1732 166 0 10 chr12 132502404 132502693 -11779796 + AluJo SINE Alu 1 286 -26 27 29 0 0 chr12 132502693 132502727 -11779762 + AT_rich Low_complexity Low_complexity 1 34 0 282 319 89 28 chr12 132502727 132502940 -11779549 - L2 LINE L2 -148 3165 2940 2234 94 0 0 chr12 132502964 132503251 -11779238 + AluSx SINE Alu 3 289 -23 345 312 163 5 chr12 132503467 132503669 -11778820 - L1MC4 LINE L1 -2 8040 7807 1627 144 98 0 chr12 132503670 132503947 -11778542 + AluJb SINE Alu 1 304 -8 2066 93 4 0 chr12 132504768 132505046 -11777443 - AluSg SINE Alu -13 297 19 1831 159 0 3 chr12 132505164 132505454 -11777035 - AluJo SINE Alu -23 289 1 288 295 0 0 chr12 132505470 132505548 -11776941 - L1ME LINE L1 -349 5772 5695 21 0 0 0 chr12 132506204 132506225 -11776264 + AT_rich Low_complexity Low_complexity 1 21 0 432 299 0 0 chr12 132506464 132506561 -11775928 + L1MC4 LINE L1 6604 6700 -1342 1919 140 0 3 chr12 132506561 132506854 -11775635 - AluJb SINE Alu -20 292 1 307 182 52 52 chr12 132506876 132506953 -11775536 + L1MB8 LINE L1 6059 6135 -43 484 34 0 0 chr12 132506953 132507012 -11775477 - AluY SINE Alu -14 298 240 1002 103 0 0 chr12 132507013 132507149 -11775340 - AluSq/x SINE Alu -176 136 1 870 172 16 102 chr12 132507158 132507344 -11775145 - AluJb SINE Alu -22 290 121 267 270 16 0 chr12 132507535 132507598 -11774891 + L2 LINE L2 3207 3270 -2 395 344 59 37 chr12 132507983 132508253 -11774236 - L2 LINE L2 -3 3269 2994 2138 80 3 23 chr12 132508404 132508538 -11773951 + AluSc SINE Alu 1 136 -173 2185 68 4 0 chr12 132508538 132508849 -11773640 + AluY SINE Alu 1 312 0 2138 80 3 23 chr12 132508849 132509015 -11773474 + AluSc SINE Alu 136 296 -13 493 309 23 11 chr12 132509077 132509252 -11773237 - Charlie8 DNA MER1_type -2187 230 54 199 264 111 0 chr12 132509520 132509592 -11772897 + L2 LINE L2 3233 3312 -1 857 126 0 0 chr12 132509730 132509857 -11772632 + FLAM_C SINE Alu 1 127 -16 1222 93 73 54 chr12 132509873 132510001 -11772488 + AluSq SINE Alu 1 136 -177 1842 119 56 14 chr12 132510001 132510287 -11772202 + AluSx SINE Alu 1 298 -14 1222 93 73 54 chr12 132510287 132510362 -11772127 + AluSq SINE Alu 136 208 -105 374 115 0 0 chr12 132510392 132510444 -11772045 - Alu SINE Alu -247 53 2 236 269 11 0 chr12 132510536 132510629 -11771860 + (TA)n Simple_repeat Simple_repeat 2 95 0 2452 74 3 0 chr12 132510691 132511003 -11771486 - AluSp SINE Alu 0 313 1 2063 129 0 13 chr12 132511067 132511370 -11771119 - AluSx SINE Alu -13 299 1 729 118 0 0 chr12 132511455 132511557 -11770932 + AluSg/x SINE Alu 204 305 -7 2010 180 60 26 chr12 132511665 132512121 -11770368 + MLT1D LTR MaLR 1 467 0 1545 174 23 4 chr12 132512248 132512503 -11769986 + AluJb SINE Alu 32 294 -18 189 0 0 0 chr12 132512503 132512524 -11769965 + (GA)n Simple_repeat Simple_repeat 2 22 0 491 304 47 28 chr12 132513462 132513676 -11768813 + MIR SINE MIR 15 232 -30 1414 241 97 7 chr12 132513686 132514109 -11768380 + MLT1C LTR MaLR 6 466 -1 350 194 139 23 chr12 132514451 132514580 -11767909 - MER113 DNA MER1_type? -67 454 311 359 164 0 0 chr12 132514593 132514666 -11767823 - L1MB8 LINE L1 0 6178 6106 1757 167 23 17 chr12 132514667 132514829 -11767660 - AluJo SINE Alu -10 302 136 2505 78 0 3 chr12 132514829 132515138 -11767351 - AluY SINE Alu -3 308 1 1757 167 23 17 chr12 132515138 132515275 -11767214 - AluJo SINE Alu -176 136 1 1514 178 46 20 chr12 132515275 132515624 -11766865 - L1M4 LINE L1 -770 5376 5019 2235 128 13 0 chr12 132515630 132515934 -11766555 - AluSx SINE Alu -4 308 1 2429 73 10 0 chr12 132515934 132516236 -11766253 - AluY SINE Alu -6 305 1 240 183 49 24 chr12 132516437 132516519 -11765970 + CT-rich Low_complexity Low_complexity 5 88 0 191 364 0 0 chr12 132516899 132516965 -11765524 + MIR SINE MIR 186 251 -11 2124 108 0 65 chr12 132517346 132517671 -11764818 - AluY SINE Alu -7 304 1 369 176 162 0 chr12 132517671 132517745 -11764744 - FLAM_A SINE Alu -10 123 38 194 61 82 20 chr12 132517771 132517820 -11764669 + CT-rich Low_complexity Low_complexity 4 55 0 1952 173 0 3 chr12 132517822 132518134 -11764355 - AluJo SINE Alu -1 311 1 2008 118 7 4 chr12 132518169 132518441 -11764048 + AluSx SINE Alu 1 273 -39 180 0 0 0 chr12 132518449 132518469 -11764020 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2461 89 0 0 chr12 132518811 132519114 -11763375 + AluSc SINE Alu 1 303 -6 570 306 98 28 chr12 132519116 132519475 -11763014 + L1MC4a LINE L1 5443 5826 -1982 1976 143 0 33 chr12 132519576 132519883 -11762606 + AluJo SINE Alu 1 297 -15 346 290 210 34 chr12 132520096 132520659 -11761830 + L2 LINE L2 2625 3276 -37 2416 77 3 7 chr12 132520718 132521017 -11761472 + AluSp SINE Alu 1 298 -15 273 169 51 0 chr12 132521034 132521093 -11761396 - U7 snRNA snRNA 0 63 2 1659 175 24 14 chr12 132521148 132521439 -11761050 - AluJo SINE Alu -18 294 1 673 140 6 107 chr12 132521447 132521625 -11760864 - L1MB7 LINE L1 -17 6167 6008 686 112 0 0 chr12 132521716 132521823 -11760666 + AluSg/x SINE Alu 203 309 0 2550 84 0 0 chr12 132521827 132522136 -11760353 + AluSq SINE Alu 1 309 -4 2142 100 38 3 chr12 132522207 132522367 -11760122 - AluSx SINE Alu -6 306 130 2064 108 0 46 chr12 132522367 132522673 -11759816 - AluSc SINE Alu -17 292 1 2142 100 38 3 chr12 132522673 132522802 -11759687 - AluSx SINE Alu -182 130 7 587 223 75 83 chr12 132523133 132523364 -11759125 + L1ME1 LINE L1 5829 6060 -106 2317 95 3 13 chr12 132523364 132523668 -11758821 + AluSq SINE Alu 1 301 -12 2400 89 3 19 chr12 132523671 132523987 -11758502 + AluY SINE Alu 1 311 0 587 223 75 83 chr12 132523987 132524053 -11758436 + L1ME1 LINE L1 6062 6166 0 547 144 178 0 chr12 132524134 132524252 -11758237 + L1MB8 LINE L1 6040 6178 0 1990 93 83 50 chr12 132524264 132524520 -11757969 + AluSg SINE Alu 1 270 -40 342 0 0 0 chr12 132524520 132524558 -11757931 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1990 93 83 50 chr12 132524558 132524601 -11757888 + AluSg SINE Alu 270 310 0 2317 99 0 0 chr12 132524613 132524905 -11757584 - AluY SINE Alu -19 292 1 445 139 0 6 chr12 132525308 132525451 -11757038 + AluJo SINE Alu 85 308 -4 245 277 118 5 chr12 132525482 132525621 -11756868 - L2 LINE L2 -223 3090 2928 1938 176 22 6 chr12 132525712 132526071 -11756418 + MLT1A1 LTR MaLR 1 365 0 197 320 107 0 chr12 132526689 132526764 -11755725 - L2 LINE L2 0 3313 3231 1864 158 29 109 chr12 132527041 132527216 -11755273 + L1MB7 LINE L1 5656 5843 -341 2646 54 0 19 chr12 132527216 132527532 -11754957 + AluY SINE Alu 1 310 -1 1864 158 29 109 chr12 132527532 132527544 -11754945 + L1MB7 LINE L1 5843 5854 -330 1727 176 3 24 chr12 132527544 132527840 -11754649 + AluJo SINE Alu 1 290 -22 1864 158 29 109 chr12 132527840 132528074 -11754415 + L1MB7 LINE L1 5854 6105 -79 726 164 0 0 chr12 132528074 132528190 -11754299 + AluJo/FLAM SINE Alu 1 116 -186 2401 86 3 7 chr12 132528190 132528494 -11753995 - AluSx SINE Alu -9 303 1 1864 158 29 109 chr12 132528494 132528593 -11753896 + L1MB7 LINE L1 6103 6137 -47 457 66 0 0 chr12 132528593 132528654 -11753835 - Alu SINE Alu -15 296 236 1060 97 0 0 chr12 132528654 132528788 -11753701 - AluSq/x SINE Alu -178 134 1 876 167 16 102 chr12 132528797 132528983 -11753506 - AluJb SINE Alu -22 290 121 261 270 16 0 chr12 132529174 132529237 -11753252 + L2 LINE L2 3207 3270 -2 347 348 59 37 chr12 132529622 132529892 -11752597 - L2 LINE L2 -3 3269 2994 2277 80 3 23 chr12 132530043 132530177 -11752312 + AluSc SINE Alu 1 136 -173 2239 82 4 0 chr12 132530177 132530488 -11752001 + AluY SINE Alu 1 312 0 2277 80 3 23 chr12 132530488 132530654 -11751835 + AluSc SINE Alu 136 296 -13 481 309 23 11 chr12 132530716 132530891 -11751598 - Charlie8 DNA MER1_type -2187 230 54 192 264 111 0 chr12 132531159 132531231 -11751258 + L2 LINE L2 3233 3312 -1 1595 78 0 50 chr12 132531369 132531512 -11750977 + AluSq SINE Alu 1 131 -182 1993 115 56 14 chr12 132531512 132531798 -11750691 + AluSx SINE Alu 1 298 -14 1595 78 0 50 chr12 132531798 132531873 -11750616 + AluSq SINE Alu 131 208 -105 369 115 0 0 chr12 132531903 132531955 -11750534 - Alu SINE Alu -248 53 2 314 280 0 76 chr12 132532049 132532167 -11750322 - L1MC4 LINE L1 -1339 6703 6595 2597 74 3 0 chr12 132532205 132532517 -11749972 - AluSp SINE Alu 0 313 1 2197 129 0 13 chr12 132532581 132532884 -11749605 - AluSx SINE Alu -13 299 1 685 118 0 0 chr12 132532969 132533071 -11749418 + AluSg/x SINE Alu 202 303 -7 1995 171 59 27 chr12 132533190 132533636 -11748853 + MLT1D LTR MaLR 12 467 0 1545 174 23 4 chr12 132533763 132534018 -11748471 + AluJb SINE Alu 32 294 -18 189 0 0 0 chr12 132534018 132534039 -11748450 + (GA)n Simple_repeat Simple_repeat 2 22 0 491 304 47 28 chr12 132534977 132535191 -11747298 + MIR SINE MIR 15 232 -30 1414 241 97 7 chr12 132535201 132535624 -11746865 + MLT1C LTR MaLR 6 466 -1 350 194 139 23 chr12 132535966 132536095 -11746394 - MER113 DNA MER1_type? -67 454 311 359 164 0 0 chr12 132536108 132536181 -11746308 - L1MB8 LINE L1 0 6178 6106 1757 167 23 17 chr12 132536182 132536344 -11746145 - AluJo SINE Alu -10 302 136 2505 78 0 3 chr12 132536344 132536653 -11745836 - AluY SINE Alu -3 308 1 1757 167 23 17 chr12 132536653 132536790 -11745699 - AluJo SINE Alu -176 136 1 1507 175 49 20 chr12 132536790 132537138 -11745351 - L1M4 LINE L1 -770 5376 5019 2236 125 13 0 chr12 132537144 132537447 -11745042 - AluSx SINE Alu -5 307 1 2447 76 7 0 chr12 132537447 132537750 -11744739 - AluY SINE Alu -6 305 1 2105 128 3 13 chr12 132537750 132538054 -11744435 - AluSx SINE Alu -11 301 1 319 288 245 30 chr12 132538113 132538770 -11743719 - L2 LINE L2 -37 3276 2496 864 140 0 22 chr12 132538891 132539027 -11743462 - FRAM SINE Alu -15 161 29 1728 163 11 0 chr12 132539133 132539403 -11743086 - AluJb SINE Alu -39 273 1 894 168 31 0 chr12 132539599 132539760 -11742729 + FRAM SINE Alu 1 166 0 411 98 0 0 chr12 132539766 132539827 -11742662 + (GAGAA)n Simple_repeat Simple_repeat 4 64 0 203 79 26 0 chr12 132539967 132540005 -11742484 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 1994 114 29 0 chr12 132540005 132540278 -11742211 - AluSq SINE Alu -32 281 1 1962 169 0 3 chr12 132540306 132540614 -11741875 + AluJo SINE Alu 1 307 -5 2306 116 10 0 chr12 132540634 132540937 -11741552 + AluSx SINE Alu 3 308 -4 383 116 139 12 chr12 132540949 132541035 -11741454 + L1ME3A LINE L1 6066 6162 -8 1153 149 9 23 chr12 132541121 132541336 -11741153 - L1MB5 LINE L1 -49 6125 5914 540 290 58 31 chr12 132541355 132541522 -11740967 + MER102b DNA MER1_type 108 284 -1144 2181 133 0 3 chr12 132541522 132541830 -11740659 - AluSx SINE Alu -5 307 1 540 290 58 31 chr12 132541830 132541886 -11740603 + MER102b DNA MER1_type 284 337 -4 418 170 192 2 chr12 132541970 132542096 -11740393 + MIR SINE MIR 30 179 -63 2337 89 0 32 chr12 132542164 132542478 -11740011 - AluSx SINE Alu -8 304 1 2071 140 10 0 chr12 132542951 132543251 -11739238 - AluSq SINE Alu -10 303 1 653 218 0 0 chr12 132543318 132543442 -11739047 - FLAM_C SINE Alu -9 124 1 2026 170 0 0 chr12 132543555 132543867 -11738622 + AluJb SINE Alu 1 312 0 413 155 78 78 chr12 132543887 132543969 -11738520 - MER63 DNA MER1_type -322 738 654 761 210 61 83 chr12 132543969 132544198 -11738291 + MER58A DNA MER1_type 1 224 0 413 155 78 78 chr12 132544198 132544218 -11738271 - MER63 DNA MER1_type -405 655 636 2418 93 7 0 chr12 132544221 132544531 -11737958 + AluSp SINE Alu 1 312 -1 2416 68 0 14 chr12 132544626 132544946 -11737543 - AluSq SINE Alu 0 313 1 253 288 30 0 chr12 132545046 132545112 -11737377 + MIR3 SINE MIR 92 159 -49 2510 75 0 0 chr12 132545273 132545578 -11736911 - AluY SINE Alu -6 305 1 1152 150 0 36 chr12 132545578 132545771 -11736718 - AluJo SINE Alu -10 302 117 1951 133 0 14 chr12 132545771 132546082 -11736407 + AluJo SINE Alu 1 307 0 2243 110 3 0 chr12 132546326 132546625 -11735864 + AluSx SINE Alu 1 300 -12 274 304 22 11 chr12 132546759 132546851 -11735638 + MIR SINE MIR 60 152 -110 435 234 241 0 chr12 132546864 132547005 -11735484 + MER5A DNA MER1_type 9 183 -6 929 145 0 0 chr12 132547026 132547157 -11735332 + FLAM_C SINE Alu 2 132 -11 435 241 21 43 chr12 132547214 132547355 -11735134 + MIR SINE MIR 123 260 -2 244 241 0 19 chr12 132547985 132548039 -11734450 - L2 LINE L2 -2 3311 3259 538 180 7 65 chr12 132548149 132548288 -11734201 + MIR SINE MIR 45 175 -87 207 283 0 0 chr12 132548297 132548350 -11734139 - L2 LINE L2 -12 3301 3249 435 216 184 53 chr12 132548385 132548575 -11733914 - MIR SINE MIR 0 262 48 525 229 34 120 chr12 132548604 132548871 -11733618 + L1MC4 LINE L1 7406 7649 -393 1319 128 5 11 chr12 132548871 132549059 -11733430 + AluSx SINE Alu 1 187 -125 510 123 0 12 chr12 132549059 132549140 -11733349 - AluS SINE Alu -228 84 5 747 185 0 8 chr12 132549194 132549324 -11733165 + FLAM_C SINE Alu 4 132 -1 2130 144 0 10 chr12 132549343 132549655 -11732834 + AluSx SINE Alu 1 309 -3 632 266 89 32 chr12 132549662 132550000 -11732489 + L1MC4 LINE L1 7623 7979 -63 299 172 0 52 chr12 132550030 132550088 -11732401 + AluS SINE Alu 15 69 -234 * 306 82 0 0 chr12 132550081 132550130 -11732359 + Alu SINE Alu 260 308 0 2433 87 0 0 chr12 132550135 132550433 -11732056 + AluY SINE Alu 1 298 -13 1064 133 0 0 chr12 132550448 132550599 -11731890 + AluSq/x SINE Alu 1 151 -162 1997 96 36 26 chr12 132550852 132551154 -11731335 + AluSx SINE Alu 2 306 -6 1643 133 0 4 chr12 132551156 132551382 -11731107 + AluSx SINE Alu 1 225 -87 270 268 21 10 chr12 132551420 132551517 -11730972 - L1MC/D LINE L1 -2011 5797 5700 562 188 183 71 chr12 132551689 132551734 -11730755 - MER20 DNA MER1_type 0 219 180 2135 116 3 20 chr12 132551734 132552037 -11730452 - AluSx SINE Alu -14 298 1 562 188 183 71 chr12 132552037 132552188 -11730301 - MER20 DNA MER1_type -39 180 1 221 287 77 63 chr12 132552289 132552432 -11730057 + MIR SINE MIR 1 145 -63 1021 99 0 0 chr12 132552436 132552567 -11729922 + AluJb SINE Alu 166 296 -16 565 143 31 0 chr12 132553666 132553764 -11728725 - AluJ/FLAM SINE Alu -210 102 2 2461 70 3 3 chr12 132553838 132554137 -11728352 - AluSp SINE Alu -9 304 6 1486 161 9 0 chr12 132554409 132554627 -11727862 + AluJo SINE Alu 1 220 -92 1280 171 9 19 chr12 132554627 132554678 -11727811 + AluJb SINE Alu 86 136 -176 2270 101 9 22 chr12 132554678 132554976 -11727513 + AluSq SINE Alu 1 296 -17 204 40 0 0 chr12 132554976 132555001 -11727488 + (TA)n Simple_repeat Simple_repeat 1 25 0 2270 101 9 22 chr12 132555001 132555019 -11727470 + AluSq SINE Alu 296 313 0 1280 171 9 19 chr12 132555019 132555183 -11727306 + AluJb SINE Alu 136 299 -13 391 183 119 0 chr12 132555335 132555461 -11727028 + AluSq/x SINE Alu 1 141 -162 426 312 99 15 chr12 132555854 132556117 -11726372 + LTR16A LTR ERVL 97 381 -69 2261 69 7 26 chr12 132556122 132556425 -11726064 + AluY SINE Alu 1 297 -14 856 169 38 0 chr12 132557172 132557332 -11725157 + FRAM SINE Alu 1 166 0 321 118 0 0 chr12 132557338 132557389 -11725100 + (GAGAA)n Simple_repeat Simple_repeat 4 54 0 203 79 26 0 chr12 132557529 132557567 -11724922 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 1648 164 29 7 chr12 132557567 132557842 -11724647 - AluSq SINE Alu -32 281 1 977 194 17 0 chr12 132557870 132558050 -11724439 + AluJo SINE Alu 1 183 -129 1237 213 22 15 chr12 132758480 132758753 -11523736 - AluJb SINE Alu -37 275 1 342 89 18 0 chr12 132758802 132758858 -11523631 - LTR37B LTR ERV1 -405 63 7 2380 60 7 0 chr12 132758996 132759294 -11523195 + AluY SINE Alu 1 300 -11 193 281 53 0 chr12 132759393 132759450 -11523039 + MIR SINE MIR 85 144 -64 878 198 6 16 chr12 132759478 132759660 -11522829 - MER5A DNA MER1_type -1 188 9 395 309 7 16 chr12 132759843 132760000 -11522489 + MIR SINE MIR 13 165 -43 1123 129 96 62 chr12 132760040 132760280 -11522209 - AluJo SINE Alu -37 275 28 902 119 0 22 chr12 132760380 132760514 -11521975 - FLAM_C SINE Alu -1 132 2 199 316 66 0 chr12 132761491 132761567 -11520922 - MIR SINE MIR -69 193 113 2327 91 0 0 chr12 132762048 132762345 -11520144 + AluSx SINE Alu 1 297 -15 2075 104 23 20 chr12 132763482 132763781 -11518708 - AluSx SINE Alu -7 305 6 2029 103 4 0 chr12 132763801 132764105 -11518384 - AluSg SINE Alu 0 313 9 1059 171 0 0 chr12 132764139 132764309 -11518180 - AluJo/FRAM SINE Alu -1 311 142 2347 80 0 0 chr12 132764312 132764613 -11517876 - AluSq SINE Alu -12 301 1 602 330 122 21 chr12 132764617 132765151 -11517338 - L2 LINE L2 -18 3295 2702 482 147 0 0 chr12 132765204 132765272 -11517217 - AluJ/FLAM SINE Alu -243 69 2 1425 128 0 0 chr12 132765305 132765508 -11516981 - AluSg/x SINE Alu -16 296 94 792 187 134 71 chr12 132765697 132766123 -11516366 + MLT1E3 LTR MaLR 3 401 -223 378 0 0 0 chr12 132766123 132766165 -11516324 + (TG)n Simple_repeat Simple_repeat 2 43 0 1769 155 11 0 chr12 132766170 132766448 -11516041 - AluJb SINE Alu -31 281 1 792 187 134 71 chr12 132766448 132766459 -11516030 + MLT1E3 LTR MaLR 404 413 -211 2010 129 0 0 chr12 132766459 132766784 -11515705 - AluSx SINE Alu 0 325 1 792 187 134 71 chr12 132766784 132766847 -11515642 + MLT1E3 LTR MaLR 413 624 0 212 333 0 0 chr12 132766880 132766961 -11515528 + L2 LINE L2 1933 2013 -1301 207 283 0 0 chr12 132767082 132767135 -11515354 + L2 LINE L2 2304 2356 -958 * 651 322 61 76 chr12 132767127 132767226 -11515263 - L2 LINE L2 -711 2603 2504 1791 135 0 52 chr12 132767226 132767553 -11514936 - AluSg SINE Alu 0 310 1 651 322 61 76 chr12 132767553 132767744 -11514745 - L2 LINE L2 -810 2504 2312 1551 189 3 36 chr12 132767744 132768051 -11514438 - AluJo SINE Alu -15 297 1 651 322 61 76 chr12 132768051 132768337 -11514152 - L2 LINE L2 -1002 2312 2023 2320 84 7 7 chr12 132768337 132768646 -11513843 + AluSc SINE Alu 1 309 0 651 322 61 76 chr12 132768646 132768882 -11513607 - L2 LINE L2 -1291 2023 1802 2285 85 3 3 chr12 132768882 132769188 -11513301 + AluSq SINE Alu 1 306 -7 651 322 61 76 chr12 132769188 132769276 -11513213 - L2 LINE L2 -1512 1802 1714 289 309 73 0 chr12 132769330 132769466 -11513023 + L2 LINE L2 2248 2393 -921 294 123 0 0 chr12 132769523 132769580 -11512909 - L1MC4a LINE L1 -808 7000 6944 1861 152 0 7 chr12 132769580 132769876 -11512613 + AluJb SINE Alu 1 294 -18 2283 86 0 10 chr12 132769908 132770221 -11512268 + AluY SINE Alu 1 310 -1 879 189 13 0 chr12 132770221 132770380 -11512109 + AluSg/x SINE Alu 132 292 -18 955 131 71 6 chr12 132770634 132770802 -11511687 - AluJo SINE Alu -30 282 104 252 184 0 0 chr12 132771594 132771643 -11510846 + (CA)n Simple_repeat Simple_repeat 2 50 0 2162 115 0 3 chr12 132773338 132773642 -11508847 - AluSx SINE Alu -1 311 9 1636 162 31 10 chr12 132773654 132773944 -11508545 - AluJo SINE Alu -16 296 1 1590 172 10 10 chr12 132774799 132775096 -11507393 + AluJb SINE Alu 1 297 -15 1283 178 111 33 chr12 132775106 132775376 -11507113 + AluJo SINE Alu 2 292 -10 775 187 0 15 chr12 132775689 132775823 -11506666 - AluSq/x SINE Alu -179 133 2 304 245 279 5 chr12 132776060 132776268 -11506221 - HAL1 LINE L1 -814 1693 1429 2353 71 0 6 chr12 132776303 132776614 -11505875 - AluY SINE Alu -2 309 1 730 193 0 15 chr12 132776617 132776752 -11505737 - FLAM_A SINE Alu 0 133 1 782 136 24 8 chr12 132777638 132777763 -11504726 + AluSg/x SINE Alu 168 294 -18 2072 87 23 23 chr12 132777766 132778065 -11504424 + AluY SINE Alu 1 299 -12 2500 200 67 31 chr12 132778081 132778507 -11503982 + L1MB7 LINE L1 5494 5950 -234 2001 125 10 0 chr12 132778507 132778804 -11503685 + AluSx SINE Alu 1 300 -12 2500 200 67 31 chr12 132778804 132778987 -11503502 + L1MB7 LINE L1 5950 6125 -59 324 215 0 15 chr12 132779551 132779616 -11502873 - L1ME4a LINE L1 -9 6112 6049 1769 109 0 4 chr12 132779621 132779868 -11502621 + AluSq SINE Alu 1 246 -67 312 186 14 0 chr12 132779992 132780062 -11502427 - L1PA16 LINE L1 -4 6162 6092 433 211 0 22 chr12 132780064 132780154 -11502335 + MSTA LTR MaLR 12 99 -329 311 287 158 0 chr12 132780345 132780446 -11502043 - LTR67 LTR ERVL -333 224 108 701 237 21 97 chr12 132780507 132780836 -11501653 - LTR37B LTR ERV1 -51 417 114 588 219 49 0 chr12 132780864 132780987 -11501502 + MER3 DNA MER1_type 1 129 -80 2104 105 3 23 chr12 132780987 132781293 -11501196 - AluSx SINE Alu -9 303 4 553 214 8 8 chr12 132781430 132781561 -11500928 - L1M4 LINE L1 -986 5160 5030 938 97 15 0 chr12 132781561 132781695 -11500794 - AluJo SINE Alu -176 136 1 1480 196 6 33 chr12 132781695 132782026 -11500463 - L1M4 LINE L1 -1115 5031 4710 1406 133 0 5 chr12 132782117 132782327 -11500162 - AluSg/x SINE Alu -17 293 85 2159 118 3 0 chr12 132782353 132782657 -11499832 - AluSx SINE Alu -7 305 1 1774 135 0 4 chr12 132783006 132783272 -11499217 - AluSx SINE Alu -14 298 34 776 182 0 0 chr12 132783705 132783837 -11498652 - AluSg/x SINE Alu -15 295 164 378 371 0 0 chr12 132783906 132784046 -11498443 + C-rich Low_complexity Low_complexity 1 140 0 24 0 0 0 chr12 132784068 132784092 -11498397 + GC_rich Low_complexity Low_complexity 1 24 0 287 313 0 0 chr12 132784229 132784392 -11498097 + C-rich Low_complexity Low_complexity 1 163 0 22 0 0 0 chr12 132784462 132784484 -11498005 + GC_rich Low_complexity Low_complexity 1 22 0 252 170 106 0 chr12 132784629 132784676 -11497813 - AluSx SINE Alu -256 52 1 2041 118 7 3 chr12 132784740 132785046 -11497443 + AluSx SINE Alu 1 307 -5 321 293 90 8 chr12 132785178 132785311 -11497178 + L1MC4 LINE L1 7898 8041 -1 1279 213 17 21 chr12 132785394 132785685 -11496804 + AluSq SINE Alu 1 290 -13 299 143 0 0 chr12 132785799 132785841 -11496648 - Alu SINE Alu -261 42 1 301 234 31 0 chr12 132785842 132785906 -11496583 + L1MB8 LINE L1 6112 6177 -1 1690 161 4 4 chr12 132785917 132786196 -11496293 + AluSx SINE Alu 1 279 -33 344 270 24 32 chr12 132786321 132786447 -11496042 - MER45A DNA AcHobo -53 125 1 702 177 35 21 chr12 132787140 132787281 -11495208 + MLT1A1 LTR MaLR 14 156 -209 2046 108 3 19 chr12 132787282 132787418 -11495071 + AluSx SINE Alu 1 138 -174 2377 69 7 0 chr12 132787418 132787723 -11494766 + AluSq SINE Alu 1 307 -6 2046 108 3 19 chr12 132787723 132787902 -11494587 + AluSx SINE Alu 138 311 -1 1034 117 172 11 chr12 132788991 132789171 -11493318 - AluSg1 SINE Alu -51 258 50 2338 64 0 7 chr12 132789275 132789573 -11492916 - AluSc SINE Alu -13 296 1 1438 178 11 18 chr12 132790373 132790654 -11491835 + AluJb SINE Alu 6 284 -28 264 265 29 0 chr12 132790817 132790885 -11491604 - MER81 DNA DNA 0 114 45 1094 205 0 43 chr12 132791615 132791816 -11490673 + L1MB5 LINE L1 5587 5776 -398 2212 78 7 0 chr12 132791816 132792099 -11490390 + AluSx SINE Alu 1 285 -27 1094 205 0 43 chr12 132792099 132792151 -11490338 + L1MB5 LINE L1 5776 5829 -345 1761 136 14 0 chr12 132792152 132792439 -11490050 + AluSx SINE Alu 21 311 -1 25 0 0 28 chr12 132793260 132793276 -11489213 + AT_rich Low_complexity Low_complexity 1 16 -19 2374 68 0 3 chr12 132793276 132793586 -11488903 - AluY SINE Alu -2 309 1 25 0 0 28 chr12 132793586 132793605 -11488884 + AT_rich Low_complexity Low_complexity 16 35 0 2217 92 6 13 chr12 132793605 132793920 -11488569 - AluSq SINE Alu 0 313 1 880 192 32 46 chr12 132793939 132794158 -11488331 - MER20 DNA MER1_type -1 218 3 1994 115 28 0 chr12 132795760 132796046 -11486443 + AluSx SINE Alu 1 294 -18 795 117 8 0 chr12 132796052 132796172 -11486317 + FRAM SINE Alu 51 171 -5 185 259 59 35 chr12 132796342 132796427 -11486062 - MIR SINE MIR -70 138 52 1815 126 29 0 chr12 132796841 132797119 -11485370 - AluSx SINE Alu -20 292 7 2103 102 3 3 chr12 132797310 132797614 -11484875 - AluSg SINE Alu -6 304 1 2467 45 3 6 chr12 132798277 132798589 -11483900 + AluY SINE Alu 1 311 0 1766 152 24 14 chr12 132798750 132799039 -11483450 - AluSx SINE Alu -20 292 1 25 0 0 0 chr12 132799270 132799295 -11483194 + AT_rich Low_complexity Low_complexity 1 25 0 358 264 7 86 chr12 132799297 132799437 -11483052 - L1MEc LINE L1 -4482 1914 1786 2169 75 18 0 chr12 132799479 132799758 -11482731 + AluSp SINE Alu 12 295 -18 1703 98 0 85 chr12 132799761 132800067 -11482422 - L1PA14 LINE L1 -52 6109 5830 302 290 24 8 chr12 132800067 132800191 -11482298 - L1ME4a LINE L1 -187 5934 5809 1167 263 78 42 chr12 132800231 132800609 -11481880 + LTR16B LTR ERVL 1 399 -65 2214 107 0 0 chr12 132800609 132800917 -11481572 - AluSx SINE Alu -4 308 1 1167 263 78 42 chr12 132800917 132800986 -11481503 + LTR16B LTR ERVL 399 464 0 1069 128 0 23 chr12 132801340 132801556 -11480933 - AluSg/x SINE Alu 0 312 121 2305 103 0 0 chr12 132801623 132801933 -11480556 - AluSg SINE Alu 0 310 1 2046 116 3 7 chr12 132801933 132802235 -11480254 - AluSg SINE Alu -8 302 2 2090 102 7 7 chr12 132802236 132802530 -11479959 - AluSg SINE Alu -15 295 2 2102 122 3 0 chr12 132802531 132802834 -11479655 - AluSx SINE Alu -8 304 1 1256 208 16 55 chr12 132803202 132803416 -11479073 + L1MB7 LINE L1 5820 6020 -164 862 132 16 0 chr12 132803416 132803545 -11478944 - FLAM_C SINE Alu -1 132 2 1256 208 16 55 chr12 132803545 132803642 -11478847 + L1MB7 LINE L1 6020 6119 -65 769 206 0 0 chr12 132803643 132803784 -11478705 + FLAM_C SINE Alu 2 142 -1 195 69 0 0 chr12 132803801 132803830 -11478659 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2000 111 7 0 chr12 132803830 132804109 -11478380 - AluSg SINE Alu -29 281 1 759 240 86 17 chr12 132804495 132804728 -11477761 - MIR SINE MIR 0 262 14 2472 51 0 6 chr12 132804812 132805125 -11477364 + AluY SINE Alu 1 311 0 1527 203 4 0 chr12 132805125 132805406 -11477083 - AluJo SINE Alu -30 282 1 2421 35 0 0 chr12 132805445 132805728 -11476761 - L1PA5 LINE L1 0 6154 5872 24 0 0 0 chr12 132805750 132805774 -11476715 + AT_rich Low_complexity Low_complexity 1 24 0 2812 248 45 5 chr12 132806486 132807114 -11475375 - MER82 DNA MER2_type 0 653 1 1865 130 10 7 chr12 132807858 132808151 -11474338 + AluSx SINE Alu 3 296 -16 1769 146 31 0 chr12 132809168 132809294 -11473195 + AluSx SINE Alu 1 122 -190 225 0 0 0 chr12 132809294 132809319 -11473170 + (CA)n Simple_repeat Simple_repeat 2 26 0 1769 146 31 0 chr12 132809319 132809480 -11473009 + AluSx SINE Alu 122 297 -15 24 0 0 0 chr12 132809486 132809510 -11472979 + AT_rich Low_complexity Low_complexity 1 24 0 769 227 39 25 chr12 132809551 132809754 -11472735 + L1MB5 LINE L1 5960 6165 -9 276 222 163 46 chr12 132810283 132810436 -11472053 - L1ME4a LINE L1 -103 6018 5848 1965 123 7 13 chr12 132810478 132810779 -11471710 + AluSx SINE Alu 1 299 -13 2137 86 4 0 chr12 132810781 132811089 -11471400 + AluSx SINE Alu 1 309 0 459 125 0 0 chr12 132811102 132811166 -11471323 - AluJ/FLAM SINE Alu -247 65 2 226 293 40 13 chr12 132811239 132811314 -11471175 - L1ME4a LINE L1 -521 5600 5524 766 187 36 119 chr12 132811455 132811635 -11470854 - MER58A DNA MER1_type -2208 212 52 2185 96 3 7 chr12 132811635 132811936 -11470553 + AluSq SINE Alu 1 300 -13 766 187 36 119 chr12 132811936 132811974 -11470515 - MER58A DNA MER1_type -2368 52 12 404 186 0 115 chr12 132811992 132812105 -11470384 + MER112 DNA MER1_type 4 103 -157 379 278 19 0 chr12 132812195 132812303 -11470186 + MER112 DNA MER1_type 140 249 -11 1025 160 23 36 chr12 132813454 132813673 -11468816 - AluJb SINE Alu -21 291 76 1378 124 84 44 chr12 132813840 132814113 -11468376 + AluJo SINE Alu 1 284 -28 2282 82 3 3 chr12 132814525 132814828 -11467661 + AluSq SINE Alu 1 303 -10 2111 126 0 0 chr12 132815171 132815473 -11467016 + AluSx SINE Alu 1 302 -10 1719 160 21 0 chr12 132815486 132815774 -11466715 + AluSx SINE Alu 1 294 -18 1698 117 4 0 chr12 132815774 132816021 -11466468 + AluSq SINE Alu 1 248 -65 360 64 0 0 chr12 132816138 132816185 -11466304 + (CA)n Simple_repeat Simple_repeat 2 48 0 440 62 16 0 chr12 132816336 132816400 -11466089 + (CA)n Simple_repeat Simple_repeat 1 65 0 2025 90 10 7 chr12 132816831 132817131 -11465358 + AluSg SINE Alu 1 301 -9 187 205 54 152 chr12 132817224 132817336 -11465153 - MIR SINE MIR -2 260 160 189 0 0 0 chr12 132817437 132817458 -11465031 + (A)n Simple_repeat Simple_repeat 1 21 0 1044 119 0 0 chr12 132817587 132817738 -11464751 + AluJb SINE Alu 144 294 -18 728 122 81 8 chr12 132817846 132817969 -11464520 - FLAM_C SINE Alu -1 132 1 691 167 160 0 chr12 132819111 132819261 -11463228 + L1MD2 LINE L1 6168 6341 -18 215 255 7 121 chr12 132819303 132819445 -11463044 + MIR SINE MIR 10 136 -126 1337 184 112 22 chr12 132819445 132819722 -11462767 + AluJb SINE Alu 1 302 0 1862 151 0 0 chr12 132819979 132820271 -11462218 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr12 132820319 132820340 -11462149 + AT_rich Low_complexity Low_complexity 1 21 0 1661 94 67 40 chr12 132821241 132821376 -11461113 + L1MA1 LINE L1 5998 6128 -174 2260 96 0 0 chr12 132821376 132821677 -11460812 + AluSx SINE Alu 1 301 -11 1661 94 67 40 chr12 132821677 132821838 -11460651 + L1MA1 LINE L1 6128 6302 0 1916 122 3 42 chr12 132822461 132822637 -11459852 - AluSx SINE Alu -13 299 139 2087 106 0 3 chr12 132822637 132822948 -11459541 - AluSg SINE Alu 0 310 1 1916 122 3 42 chr12 132822948 132823082 -11459407 - AluSx SINE Alu -173 139 1 288 237 227 10 chr12 132823102 132823199 -11459290 - L2 LINE L2 -4 3268 3151 254 236 207 17 chr12 132823489 132823663 -11458826 - L1M4 LINE L1 -743 5403 5197 1621 89 9 0 chr12 132823666 132823890 -11458599 - AluSg/x SINE Alu -1 309 84 21 0 0 0 chr12 132823926 132823947 -11458542 + AT_rich Low_complexity Low_complexity 1 21 0 349 226 30 152 chr12 132824392 132824556 -11457933 + L1M LINE L1 5279 5422 -2386 2420 181 32 44 chr12 132824659 132824748 -11457741 - L1MC4 LINE L1 -364 7678 7589 1879 105 26 26 chr12 132824748 132825061 -11457428 - AluSq SINE Alu 0 313 1 2178 112 0 0 chr12 132825062 132825358 -11457131 - AluSx SINE Alu -16 296 1 2420 181 32 44 chr12 132825358 132825851 -11456638 - L1MC4 LINE L1 -452 7590 7101 198 0 0 0 chr12 132825857 132825879 -11456610 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 1659 135 7 11 chr12 132825879 132826160 -11456329 - AluSx SINE Alu -31 281 2 1905 149 0 0 chr12 132826675 132826970 -11455519 - AluSx SINE Alu -17 295 1 2278 52 9 58 chr12 132827236 132827563 -11454926 - AluY SINE Alu 0 311 1 821 175 81 12 chr12 132827724 132827884 -11454605 + AluJo SINE Alu 29 199 -113 344 261 89 33 chr12 132827888 132828068 -11454421 + AluY SINE Alu 41 230 -71 528 59 0 0 chr12 132828326 132828394 -11454095 + (CATA)n Simple_repeat Simple_repeat 2 69 0 1508 191 45 33 chr12 132828395 132828550 -11453939 - L1M4 LINE L1 -532 5642 5490 2005 123 3 19 chr12 132828550 132828858 -11453631 - AluSx SINE Alu -9 303 1 1508 191 45 33 chr12 132828858 132829310 -11453179 - L1M4 LINE L1 -684 5490 5030 883 105 23 0 chr12 132829310 132829443 -11453046 - AluJo SINE Alu -176 136 1 1544 185 12 33 chr12 132829443 132829772 -11452717 - L1M4 LINE L1 -1115 5031 4710 1340 139 0 5 chr12 132829865 132830073 -11452416 - AluSg/x SINE Alu -19 293 87 2008 141 0 0 chr12 132830099 132830404 -11452085 - AluSx SINE Alu -7 305 1 2280 52 12 58 chr12 132830670 132830996 -11451493 - AluY SINE Alu 0 311 1 440 62 16 0 chr12 132831425 132831489 -11451000 + (TG)n Simple_repeat Simple_repeat 1 65 0 369 162 0 0 chr12 132831640 132831708 -11450781 + (TG)n Simple_repeat Simple_repeat 1 68 0 22 0 0 0 chr12 132831866 132831888 -11450601 + AT_rich Low_complexity Low_complexity 1 22 0 2062 123 0 19 chr12 132831926 132832244 -11450245 + AluSx SINE Alu 1 312 0 1106 163 48 10 chr12 132832371 132832580 -11449909 + AluJo SINE Alu 1 217 -95 265 258 0 0 chr12 132832626 132832688 -11449801 - MIR SINE MIR 0 262 201 1803 24 0 0 chr12 132832709 132832919 -11449570 + AluYb8 SINE Alu 105 314 -4 737 261 22 11 chr12 132832992 132833172 -11449317 - MIR SINE MIR -77 185 4 819 247 110 23 chr12 132833576 132833795 -11448694 + MIR SINE MIR 25 262 0 1896 132 21 0 chr12 132833800 132834088 -11448401 - AluSx SINE Alu -16 296 3 234 293 65 0 chr12 132834122 132834245 -11448244 - L1MC/D LINE L1 -1910 5898 5768 454 264 181 58 chr12 132834816 132834894 -11447595 - LTR33 LTR ERVL 0 521 454 2214 100 3 0 chr12 132834894 132835193 -11447296 + AluSx SINE Alu 1 300 -12 1309 192 89 0 chr12 132835199 132835470 -11447019 + AluJb SINE Alu 1 295 -7 454 264 181 58 chr12 132835470 132835847 -11446642 - LTR33 LTR ERVL -71 450 2 1783 138 0 43 chr12 132835866 132836191 -11446298 + AluJb SINE Alu 1 311 -1 599 220 54 87 chr12 132836644 132836921 -11445568 - L1MC4a LINE L1 -1977 5831 5564 2172 108 0 0 chr12 132836932 132837229 -11445260 + AluSx SINE Alu 1 297 -15 2180 104 0 0 chr12 132838385 132838683 -11443806 - AluSx SINE Alu -14 298 1 1983 107 11 7 chr12 132839850 132840159 -11442330 - AluSx SINE Alu 0 310 1 1026 156 73 23 chr12 132841198 132841416 -11441073 - AluJo SINE Alu -23 289 61 522 223 0 0 chr12 132841465 132841559 -11440930 - AluJ/FLAM SINE Alu -213 99 6 1839 144 3 3 chr12 132844386 132844677 -11437812 - AluSx SINE Alu -16 296 6 1939 112 0 4 chr12 132844874 132845143 -11437346 - AluSx SINE Alu -22 290 23 31 0 0 0 chr12 132845587 132845618 -11436871 + AT_rich Low_complexity Low_complexity 1 31 0 2120 78 3 3 chr12 132845660 132845970 -11436519 - AluSg SINE Alu 0 310 1 264 139 0 0 chr12 132845977 132846020 -11436469 - FLAM SINE Alu -5 128 86 2238 96 0 13 chr12 132846136 132846450 -11436039 - AluSg SINE Alu 0 310 1 21 82 0 0 chr12 132846782 132846831 -11435658 + AT_rich Low_complexity Low_complexity 1 49 0 1109 197 0 14 chr12 132846910 132847133 -11435356 + AluJo SINE Alu 1 220 -92 2236 89 0 23 chr12 132847155 132847458 -11435031 + AluSc SINE Alu 1 296 -13 1084 175 0 0 chr12 132847572 132847743 -11434746 + FAM SINE Alu 1 171 -4 218 350 50 25 chr12 132847749 132847869 -11434620 - MIR3 SINE MIR -73 135 13 22 0 0 0 chr12 132847882 132847904 -11434585 + AT_rich Low_complexity Low_complexity 1 22 0 2319 85 3 0 chr12 132848035 132848342 -11434147 + AluSq SINE Alu 1 308 -5 2143 94 44 0 chr12 132848941 132849238 -11433251 + AluSx SINE Alu 1 310 -2 1237 225 31 77 chr12 132849571 132849737 -11432752 - L1M4 LINE L1 -1812 4334 4162 2001 143 0 6 chr12 132849737 132850052 -11432437 - AluSq SINE Alu 0 313 1 1779 137 14 3 chr12 132850054 132850368 -11432121 - AluSx SINE Alu 0 312 1 1237 225 31 77 chr12 132850368 132850612 -11431877 - L1M4 LINE L1 -1985 4161 3940 312 224 24 24 chr12 132850715 132850800 -11431689 + MIR SINE MIR 89 173 -89 1942 119 0 39 chr12 132851311 132851623 -11430866 + AluSq SINE Alu 1 300 -13 886 84 7 9 chr12 132851623 132851904 -11430585 + AluSx SINE Alu 2 333 0 790 196 0 0 chr12 132851917 132852050 -11430439 + FLAM_C SINE Alu 1 133 0 2131 95 0 10 chr12 132852386 132852690 -11429799 + AluSg SINE Alu 1 301 -9 1966 104 66 0 chr12 132852700 132852988 -11429501 + AluSc SINE Alu 1 307 -2 191 292 0 0 chr12 132853031 132853079 -11429410 - MIR SINE MIR -102 160 113 645 322 143 23 chr12 132853106 132853264 -11429225 - L2 LINE L2 -493 2821 2683 1831 144 0 0 chr12 132853264 132853573 -11428916 + AluSx SINE Alu 1 309 0 645 322 143 23 chr12 132853573 132853651 -11428838 - L2 LINE L2 -631 2683 2616 1944 180 91 0 chr12 132853651 132854013 -11428476 - MER47B DNA MER2_type -1905 418 18 2065 108 0 26 chr12 132854013 132854318 -11428171 + AluSx SINE Alu 2 298 -14 1944 180 91 0 chr12 132854318 132854338 -11428151 - MER47B DNA MER2_type -2305 18 1 645 322 143 23 chr12 132854338 132854497 -11427992 - L2 LINE L2 -698 2616 2376 1950 136 7 14 chr12 132854939 132855098 -11427391 - AluSx SINE Alu -19 293 135 2382 89 7 0 chr12 132855098 132855401 -11427088 - AluSp SINE Alu -7 306 2 1950 136 7 14 chr12 132855401 132855536 -11426953 - AluSx SINE Alu -177 135 1 1124 159 0 6 chr12 132855537 132855707 -11426782 - AluSg/x SINE Alu -16 294 126 2485 75 0 3 chr12 132855712 132856018 -11426471 - AluSx SINE Alu -7 305 1 2085 133 0 10 chr12 132856621 132856922 -11425567 + AluSx SINE Alu 1 298 -14 562 198 63 63 chr12 132856922 132857120 -11425369 + L1MC5 LINE L1 7725 7925 -36 1396 127 36 5 chr12 132859581 132859801 -11422688 + AluSq SINE Alu 72 298 -15 624 165 9 0 chr12 132859823 132859932 -11422557 - FLAM_C SINE Alu -32 111 2 1983 219 48 15 chr12 132859935 132860477 -11422012 - L1MD3 LINE L1 -20 7975 7307 637 197 8 0 chr12 132860479 132860596 -11421893 - MLT1F1 LTR MaLR -448 119 2 981 167 0 0 chr12 132860601 132860763 -11421726 - L1MD3 LINE L1 -731 7264 7103 2462 80 3 0 chr12 132860782 132861083 -11421406 + AluY SINE Alu 5 306 -5 1076 171 0 17 chr12 132861083 132861264 -11421225 + AluJo/FRAM SINE Alu 134 311 -1 1956 144 3 3 chr12 132863076 132863367 -11419122 - AluSx SINE Alu -16 296 6 2054 112 0 4 chr12 132863564 132863833 -11418656 - AluSx SINE Alu -22 290 23 31 0 0 0 chr12 132864277 132864308 -11418181 + AT_rich Low_complexity Low_complexity 1 31 0 2192 106 0 0 chr12 132864350 132864662 -11417827 - AluSx SINE Alu 0 312 1 2277 105 0 0 chr12 132864678 132864972 -11417517 - AluSg SINE Alu -16 294 1 2208 118 0 0 chr12 132865151 132865447 -11417042 + AluSx SINE Alu 1 296 -16 399 41 0 0 chr12 132865448 132865497 -11416992 + (CA)n Simple_repeat Simple_repeat 2 50 0 183 129 0 0 chr12 132865928 132865959 -11416530 + (CATATA)n Simple_repeat Simple_repeat 4 34 0 207 0 0 0 chr12 132866203 132866226 -11416263 + (CA)n Simple_repeat Simple_repeat 1 23 0 316 137 0 0 chr12 132866628 132866679 -11415810 - Alu SINE Alu -6 296 246 482 163 87 0 chr12 132866679 132866771 -11415718 - AluJ/FLAM SINE Alu -210 102 3 1651 199 10 3 chr12 132866786 132867078 -11415411 - AluJo SINE Alu -18 294 1 254 146 0 0 chr12 132867111 132867152 -11415337 - Alu SINE Alu -13 289 249 854 147 23 0 chr12 132867173 132867302 -11415187 - FLAM_C SINE Alu -1 132 1 766 230 94 38 chr12 132867401 132867688 -11414801 + L1MC4a LINE L1 5606 5908 -1900 2305 62 10 10 chr12 132869893 132870182 -11412307 - AluSx SINE Alu -10 302 14 1514 202 21 3 chr12 132870222 132870559 -11411930 + L1MD3 LINE L1 7651 7993 -2 1544 154 0 85 chr12 132871222 132871541 -11410948 + AluJo SINE Alu 1 292 -20 213 196 0 0 chr12 132872464 132872510 -11409979 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr12 132872593 132872622 -11409867 + AT_rich Low_complexity Low_complexity 1 29 0 2263 94 44 0 chr12 132873264 132873561 -11408928 - AluSx SINE Alu -2 310 1 2447 85 3 0 chr12 132874160 132874467 -11408022 - AluSq SINE Alu -5 308 1 22 0 0 0 chr12 132874598 132874620 -11407869 + AT_rich Low_complexity Low_complexity 1 22 0 185 350 50 25 chr12 132874633 132874753 -11407736 + MIR3 SINE MIR 13 135 -73 1077 175 0 0 chr12 132874759 132874930 -11407559 - FAM SINE Alu -4 171 1 2368 89 0 23 chr12 132875044 132875347 -11407142 - AluSc SINE Alu -13 296 1 1194 197 0 14 chr12 132875369 132875592 -11406897 - AluJo SINE Alu -92 220 1 21 82 0 0 chr12 132875671 132875720 -11406769 + AT_rich Low_complexity Low_complexity 1 49 0 2373 96 0 13 chr12 132876052 132876366 -11406123 + AluSg SINE Alu 1 310 0 1093 171 13 43 chr12 132876482 132876532 -11405957 + AluJo SINE Alu 86 136 -176 2320 92 0 0 chr12 132876532 132876838 -11405651 + AluY SINE Alu 1 306 -5 1093 171 13 43 chr12 132876838 132877021 -11405468 + AluJo SINE Alu 136 312 0 2119 118 27 3 chr12 132877842 132878138 -11404351 - AluSg SINE Alu -7 303 1 2095 75 3 20 chr12 132878644 132878936 -11403553 + AluY SINE Alu 22 308 -3 332 212 0 0 chr12 132878993 132879059 -11403430 + L1ME1 LINE L1 5822 5887 -279 1491 187 92 3 chr12 132879061 132879345 -11403144 + AluJo SINE Alu 1 309 -3 2044 118 3 30 chr12 132879348 132879653 -11402836 + AluSg SINE Alu 1 297 -13 29 28 0 0 chr12 132879653 132879689 -11402800 + AT_rich Low_complexity Low_complexity 1 36 0 1799 121 8 19 chr12 132879703 132879967 -11402522 + AluSx SINE Alu 37 297 -15 2924 224 27 7 chr12 132879987 132880702 -11401787 - L1M4 LINE L1 -3290 2856 2128 972 225 104 5 chr12 132880697 132880957 -11401532 + L1ME1 LINE L1 5893 6334 0 * 29 90 0 0 chr12 132881164 132881242 -11401247 + AT_rich Low_complexity Low_complexity 1 78 0 1007 180 12 0 chr12 132881297 132881464 -11401025 + FRAM SINE Alu 1 168 -8 208 350 50 0 chr12 132881948 132882028 -11400461 + L2 LINE L2 3230 3313 0 1059 297 64 7 chr12 132882367 132882788 -11399701 + LTR16A LTR ERVL 6 450 0 1794 142 48 7 chr12 132882908 132883197 -11399292 + AluSx SINE Alu 3 303 -9 1946 133 10 17 chr12 132883250 132883551 -11398938 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr12 132884112 132884143 -11398346 + AT_rich Low_complexity Low_complexity 1 31 0 244 227 69 71 chr12 132884144 132884215 -11398274 - HAL1b LINE L1 -2 1346 1276 2591 57 0 0 chr12 132884215 132884514 -11397975 + AluY SINE Alu 2 300 -11 244 227 69 71 chr12 132884514 132884555 -11397934 - HAL1b LINE L1 -72 1276 1236 1622 174 13 45 chr12 132884555 132884866 -11397623 + AluJo SINE Alu 1 301 -11 244 227 69 71 chr12 132884866 132885059 -11397430 - HAL1b LINE L1 -112 1236 982 1025 63 16 0 chr12 132885149 132885276 -11397213 - AluSg/x SINE Alu -15 297 169 1873 196 62 34 chr12 132885437 132885950 -11396539 + L1MC4 LINE L1 7278 7807 -1 2087 117 0 17 chr12 132885968 132886267 -11396222 + AluSg SINE Alu 1 294 -16 1023 269 56 58 chr12 132886283 132886676 -11395813 - HAL1b LINE L1 -590 758 365 2096 114 13 3 chr12 132886676 132886975 -11395514 - AluSp SINE Alu -7 306 5 1023 269 56 58 chr12 132886975 132887061 -11395428 - HAL1b LINE L1 -983 365 280 1965 144 3 0 chr12 132887192 132887476 -11395013 - AluSx SINE Alu -27 285 1 676 157 8 25 chr12 132887490 132887611 -11394878 - FLAM_C SINE Alu -23 120 2 2166 112 3 3 chr12 132888948 132889242 -11393247 - AluSx SINE Alu -18 294 1 898 130 0 14 chr12 132889886 132890024 -11392465 + FRAM SINE Alu 21 156 -20 3126 94 20 26 chr12 132890173 132890367 -11392122 + MLT2A2 LTR ERVL 1 195 -258 1798 138 53 3 chr12 132890367 132890649 -11391840 + AluSx SINE Alu 1 296 -16 3126 94 20 26 chr12 132890649 132890910 -11391579 + MLT2A2 LTR ERVL 195 453 0 254 232 123 39 chr12 132891529 132891580 -11390909 + MIR SINE MIR 53 98 -164 2509 88 0 0 chr12 132891580 132891888 -11390601 - AluSg1 SINE Alu -1 308 1 254 232 123 39 chr12 132891888 132891991 -11390498 + MIR SINE MIR 98 220 -42 21 0 0 0 chr12 132892132 132892153 -11390336 + AT_rich Low_complexity Low_complexity 1 21 0 430 265 93 6 chr12 132893166 132893328 -11389161 + MIR SINE MIR 86 261 -1 180 219 0 0 chr12 132895680 132895721 -11386768 + (TA)n Simple_repeat Simple_repeat 1 41 0 26 39 0 20 chr12 132895983 132896011 -11386478 + AT_rich Low_complexity Low_complexity 1 29 -21 2465 65 3 0 chr12 132896011 132896304 -11386185 - AluY SINE Alu -17 294 1 26 39 0 20 chr12 132896304 132896326 -11386163 + AT_rich Low_complexity Low_complexity 29 50 0 294 295 93 14 chr12 132896328 132896467 -11386022 - MIR SINE MIR -50 212 63 1951 158 0 3 chr12 132897063 132897360 -11385129 + AluSx SINE Alu 1 296 -16 2162 114 33 0 chr12 132898026 132898325 -11384164 + AluSp SINE Alu 1 309 -4 2025 141 13 16 chr12 132898456 132898592 -11383897 + AluSx SINE Alu 1 136 -176 2285 113 0 0 chr12 132898592 132898902 -11383587 + AluSg SINE Alu 1 310 0 2025 141 13 16 chr12 132898902 132899078 -11383411 + AluSx SINE Alu 136 312 0 2427 74 3 3 chr12 132900221 132900520 -11381969 - AluY SINE Alu -12 299 1 589 139 0 0 chr12 132900651 132900737 -11381752 + AluS SINE Alu 2 87 -226 1947 155 10 0 chr12 132900792 132901083 -11381406 - AluJb SINE Alu -14 298 5 2165 104 7 0 chr12 132902832 132903115 -11379374 + AluSq SINE Alu 1 286 -23 212 71 48 0 chr12 132903115 132903157 -11379332 + (CAA)n Simple_repeat Simple_repeat 2 180 0 22 35 0 0 chr12 132904387 132904416 -11378073 + AT_rich Low_complexity Low_complexity 1 29 0 2276 73 28 0 chr12 132904570 132904859 -11377630 + AluY SINE Alu 1 297 -14 712 211 0 8 chr12 132904899 132905027 -11377462 + FLAM_A SINE Alu 1 127 -6 1926 130 53 17 chr12 132905037 132905336 -11377153 + AluSg SINE Alu 1 310 0 1240 158 48 10 chr12 132905463 132905672 -11376817 + AluJo SINE Alu 1 217 -95 258 258 0 0 chr12 132905718 132905780 -11376709 - MIR SINE MIR 0 262 201 1902 24 0 0 chr12 132905801 132906011 -11376478 + AluYb8 SINE Alu 105 314 -4 738 261 22 11 chr12 132906084 132906264 -11376225 - MIR SINE MIR -77 185 4 818 247 110 23 chr12 132906668 132906887 -11375602 + MIR SINE MIR 25 262 0 2125 122 21 0 chr12 132906892 132907180 -11375309 - AluSx SINE Alu -16 296 3 423 302 63 0 chr12 132907214 132907340 -11375149 - L1MC4a LINE L1 -1910 5898 5765 462 267 177 56 chr12 132907898 132907976 -11374513 - LTR33 LTR ERVL 0 521 454 2364 100 3 0 chr12 132907976 132908275 -11374214 + AluSx SINE Alu 1 300 -12 1316 190 89 0 chr12 132908281 132908550 -11373939 + AluJo SINE Alu 1 293 -19 462 267 177 56 chr12 132908550 132908928 -11373561 - LTR33 LTR ERVL -71 450 2 1933 138 0 43 chr12 132908947 132909272 -11373217 + AluJb SINE Alu 1 311 -1 527 274 45 45 chr12 132909736 132910002 -11372487 - L1MC4a LINE L1 -1979 5829 5564 2320 108 0 0 chr12 132910013 132910310 -11372179 + AluSx SINE Alu 1 297 -15 2322 116 0 0 chr12 132911454 132911764 -11370725 - AluSx SINE Alu -2 310 1 2149 103 11 7 chr12 132912931 132913240 -11369249 - AluSx SINE Alu 0 310 1 1238 161 73 9 chr12 132914276 132914494 -11367995 - AluJo SINE Alu -20 292 61 540 223 0 0 chr12 132914543 132914637 -11367852 - AluJ/FLAM SINE Alu -213 99 6 199 75 0 75 chr12 132917118 132917171 -11365318 + (CCCCG)n Simple_repeat Simple_repeat 4 52 0 1771 105 6 68 chr12 132918129 132918300 -11364189 - AluJb SINE Alu -7 305 162 2037 94 0 0 chr12 132918300 132918565 -11363924 - AluSx SINE Alu -4 308 44 1771 105 6 68 chr12 132918565 132918718 -11363771 - AluJb SINE Alu -150 162 1 1098 231 153 90 chr12 132919286 132919447 -11363042 - L2 LINE L2 -2 3311 3162 1866 147 31 0 chr12 132919447 132919739 -11362750 + AluJo SINE Alu 1 301 -11 1098 231 153 90 chr12 132919739 132920088 -11362401 - L2 LINE L2 -151 3162 2836 2110 124 7 0 chr12 132920088 132920387 -11362102 - AluSx SINE Alu -11 301 1 1098 231 153 90 chr12 132920387 132920601 -11361888 - L2 LINE L2 -477 2836 2637 2286 136 21 6 chr12 132920601 132920932 -11361557 + MER1B DNA MER1_type 2 337 0 1098 231 153 90 chr12 132920932 132920950 -11361539 - L2 LINE L2 -676 2637 2622 325 42 0 0 chr12 132920950 132920998 -11361491 - AluY SINE Alu 0 301 254 1830 63 0 5 chr12 132920998 132921219 -11361270 - AluY SINE Alu -91 220 1 1098 231 153 90 chr12 132921219 132921388 -11361101 - L2 LINE L2 -690 2623 2277 1501 187 42 0 chr12 132921842 132922104 -11360385 + AluJo SINE Alu 1 273 -39 287 273 216 17 chr12 132922441 132922617 -11359872 + MIR SINE MIR 8 218 -44 2018 128 4 0 chr12 132922849 132923167 -11359322 - AluSq SINE Alu 0 319 1 2327 112 0 0 chr12 132923168 132923464 -11359025 - AluSx SINE Alu -16 296 1 554 133 41 0 chr12 132923464 132923562 -11358927 - L1MC4 LINE L1 -440 7602 7501 1929 112 18 28 chr12 132923957 132924279 -11358210 - AluSq SINE Alu 0 319 1 2512 79 0 0 chr12 132924596 132924900 -11357589 - AluSc SINE Alu -4 305 2 2112 92 31 10 chr12 132924902 132925194 -11357295 - AluSg SINE Alu -12 298 1 678 193 103 0 chr12 132925677 132925822 -11356667 + MER58B DNA MER1_type 182 341 0 1585 191 13 23 chr12 132926035 132926334 -11356155 + AluJo SINE Alu 1 296 -16 2151 113 14 7 chr12 132926334 132926625 -11355864 - AluSx SINE Alu -19 293 1 220 291 35 23 chr12 132927687 132927773 -11354716 - MIR3 SINE MIR -9 199 113 241 350 17 43 chr12 132927820 132927937 -11354552 - MIR SINE MIR -93 169 56 847 152 0 48 chr12 132927951 132928096 -11354393 - FLAM_C SINE Alu 0 143 6 2103 89 6 80 chr12 132928245 132928559 -11353930 - AluSq SINE Alu -22 291 1 1289 145 186 8 chr12 132928562 132928810 -11353679 - AluSg1 SINE Alu -17 292 1 1618 125 89 53 chr12 132928859 132929140 -11353349 + AluSx SINE Alu 9 299 -13 1663 150 69 4 chr12 132929148 132929422 -11353067 + AluJo SINE Alu 1 292 -20 942 172 46 17 chr12 132929494 132929668 -11352821 + AluSg/x SINE Alu 120 298 -14 1973 137 7 7 chr12 132929731 132930054 -11352435 - AluSx SINE Alu 0 312 1 1372 170 120 40 chr12 132930333 132930609 -11351880 - AluJb SINE Alu -14 298 1 2120 92 13 26 chr12 132930902 132931205 -11351284 + AluY SINE Alu 3 301 -10 336 349 148 39 chr12 132931250 132931689 -11350800 + L1M4 LINE L1 3520 4006 -2140 236 292 0 14 chr12 132931739 132931811 -11350678 + L1M4 LINE L1 4078 4148 -1998 1881 141 10 24 chr12 132931899 132932196 -11350293 - AluSx SINE Alu -19 293 1 2250 82 26 16 chr12 132932196 132932500 -11349989 - AluSx SINE Alu -5 307 1 202 282 116 84 chr12 132936180 132936535 -11345954 - L2 LINE L2 -52 3220 2855 1782 120 51 0 chr12 132936535 132936811 -11345678 - AluJo SINE Alu -13 299 10 23 0 0 0 chr12 132936994 132937017 -11345472 + GC_rich Low_complexity Low_complexity 1 23 0 2091 113 3 0 chr12 132938477 132938768 -11343721 - AluSx SINE Alu -20 292 1 2161 202 85 5 chr12 132938768 132939367 -11343122 + Charlie1 DNA MER1_type 1847 2493 -268 1845 105 40 0 chr12 132939478 132939726 -11342763 - AluSq SINE Alu -55 258 1 258 273 0 15 chr12 132940929 132940995 -11341494 + CT-rich Low_complexity Low_complexity 5 69 0 1922 165 0 0 chr12 132941694 132941991 -11340498 + AluJo SINE Alu 1 297 -15 2378 89 0 0 chr12 132941996 132942299 -11340190 + AluY SINE Alu 1 303 -8 763 62 21 0 chr12 132942499 132942595 -11339894 + AluSc SINE Alu 198 295 -14 2381 91 0 10 chr12 132942645 132942954 -11339535 + AluSq SINE Alu 1 306 -7 1781 169 33 12 chr12 132942954 132943291 -11339198 + L1MB7 LINE L1 5819 6162 -22 2284 115 0 19 chr12 132943291 132943605 -11338884 + AluSq SINE Alu 1 308 -5 2000 125 4 18 chr12 132944113 132944393 -11338096 + AluSq SINE Alu 1 276 -37 2132 114 31 3 chr12 132944803 132945092 -11337397 - AluSx SINE Alu -15 297 1 1508 210 22 114 chr12 132945701 132946037 -11336452 + L1M4c LINE L1 1255 1504 -4880 1979 136 28 0 chr12 132946037 132946323 -11336166 + AluSx SINE Alu 1 294 -18 1508 210 22 114 chr12 132946323 132946633 -11335856 + L1M4c LINE L1 1504 1841 -4543 694 232 0 0 chr12 132946809 132946947 -11335542 + FLAM_C SINE Alu 3 140 -3 931 165 45 23 chr12 132947203 132947379 -11335110 - AluSg/x SINE Alu -13 297 118 1663 150 69 4 chr12 132947451 132947725 -11334764 - AluJo SINE Alu -20 292 1 1618 125 89 53 chr12 132947733 132948014 -11334475 - AluSx SINE Alu -13 299 9 1289 145 186 8 chr12 132948063 132948311 -11334178 + AluSg1 SINE Alu 1 292 -17 2077 92 6 80 chr12 132948314 132948628 -11333861 + AluSq SINE Alu 1 291 -22 1994 111 32 4 chr12 132948785 132949065 -11333424 + AluSq SINE Alu 15 302 -11 1093 163 45 86 chr12 132949167 132949357 -11333132 - MER33 DNA MER1_type -2262 323 152 1917 158 17 0 chr12 132949357 132949654 -11332835 - AluJo SINE Alu -10 302 1 1093 163 45 86 chr12 132949654 132949800 -11332689 - MER33 DNA MER1_type -2433 152 1 2320 108 0 10 chr12 132950270 132950577 -11331912 - AluSx SINE Alu -8 304 1 1134 257 114 18 chr12 132950751 132951136 -11331353 - L2 LINE L2 -4 3309 2888 2087 138 10 10 chr12 132951136 132951447 -11331042 + AluSx SINE Alu 1 311 -1 1042 175 9 67 chr12 132951383 132951606 -11330883 + AluJb SINE Alu 85 294 -18 966 163 68 11 chr12 132951860 132952050 -11330439 - AluJo SINE Alu -30 282 82 2299 115 7 0 chr12 132952465 132952770 -11329719 - AluSx SINE Alu -5 307 1 305 213 58 155 chr12 132953025 132953232 -11329257 + MIR SINE MIR 20 206 -56 711 193 0 15 chr12 132954964 132955099 -11327390 + FLAM_A SINE Alu 1 133 0 2466 66 3 0 chr12 132955102 132955403 -11327086 + AluY SINE Alu 1 302 -9 1969 128 27 14 chr12 132956311 132956608 -11325881 + AluSx SINE Alu 1 301 -11 711 241 91 17 chr12 132957399 132957631 -11324858 - MIR SINE MIR 0 262 14 846 202 13 70 chr12 132957675 132957715 -11324774 - AluJo SINE Alu -4 308 267 2594 51 0 6 chr12 132957715 132958028 -11324461 + AluY SINE Alu 1 311 0 846 202 13 70 chr12 132958028 132958215 -11324274 - AluJo SINE Alu -45 267 94 2288 94 7 7 chr12 132958442 132958749 -11323740 - AluSq SINE Alu -6 307 1 742 327 61 39 chr12 132958749 132959211 -11323278 - ERVL LTR ERVL -1275 4489 4018 392 286 58 58 chr12 132959256 132959462 -11323027 - ERVL LTR ERVL -3264 2500 2295 574 109 54 0 chr12 132959479 132959571 -11322918 - AluSg/x SINE Alu -21 291 195 2304 59 7 3 chr12 132959682 132959968 -11322521 - AluY SINE Alu -24 287 1 296 210 0 0 chr12 132959969 132960031 -11322458 - L1M4 LINE L1 -944 5202 5141 * 1570 230 25 0 chr12 132960027 132960384 -11322105 + L1MC4 LINE L1 6716 7081 -961 2141 103 14 0 chr12 132960398 132960680 -11321809 + AluSx SINE Alu 12 297 -15 42 0 0 0 chr12 132961028 132961070 -11321419 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr12 132961171 132961199 -11321290 + AT_rich Low_complexity Low_complexity 1 28 0 1169 198 51 38 chr12 132961488 132961810 -11320679 + L1ME2 LINE L1 5844 6184 0 1948 124 7 0 chr12 132961934 132962216 -11320273 - AluSq SINE Alu -2 311 28 1792 147 24 20 chr12 132962395 132962687 -11319802 + AluJb SINE Alu 3 295 -17 2206 93 7 3 chr12 132962688 132962979 -11319510 + AluY SINE Alu 1 292 -19 2256 92 7 7 chr12 132963175 132963481 -11319008 + AluSp SINE Alu 1 306 -7 1871 98 0 0 chr12 132963649 132963884 -11318605 - AluSc SINE Alu -72 237 3 360 0 0 0 chr12 132963897 132963937 -11318552 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1975 113 75 7 chr12 132964120 132964402 -11318087 - AluSq SINE Alu -12 301 1 1903 171 0 0 chr12 132964403 132964696 -11317793 - AluJb SINE Alu -19 293 1 555 167 106 61 chr12 132967899 132967932 -11314557 + MER3 DNA MER1_type 1 31 -131 2338 86 3 10 chr12 132967932 132968235 -11314254 - AluSq SINE Alu -12 301 1 555 167 106 61 chr12 132968235 132968333 -11314156 + MER3 DNA MER1_type 31 138 -71 216 0 0 0 chr12 132968351 132968375 -11314114 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 649 108 0 0 chr12 132968377 132968470 -11314019 - AluSg/x SINE Alu -30 279 187 1946 131 14 3 chr12 132968529 132968820 -11313669 - AluSx SINE Alu -8 304 11 296 236 0 0 chr12 132968833 132968888 -11313601 + MER3 DNA MER1_type 155 209 0 254 245 0 0 chr12 132968845 132968894 -11313595 - MER3 DNA MER1_type -119 90 42 * 288 191 0 59 chr12 132969131 132969179 -11313310 + AluS SINE Alu 1 44 -259 249 206 0 59 chr12 132969179 132969227 -11313262 + AluS SINE Alu 1 44 -259 240 213 0 0 chr12 132969227 132969274 -11313215 + AluJ/monomer SINE Alu 1 47 -256 1924 158 7 0 chr12 132969275 132969566 -11312923 + AluJo SINE Alu 1 293 -19 935 133 0 7 chr12 132970041 132970176 -11312313 + FLAM_C SINE Alu 1 134 -9 30 59 0 0 chr12 132971349 132971400 -11311089 + AT_rich Low_complexity Low_complexity 1 51 0 315 0 0 0 chr12 132971443 132971478 -11311011 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2197 80 11 0 chr12 132971480 132971756 -11310733 - AluY SINE Alu -30 281 3 1865 155 14 10 chr12 132971924 132972220 -11310269 + AluSx SINE Alu 1 297 -15 2437 68 0 7 chr12 132972223 132972517 -11309972 + AluY SINE Alu 1 292 -19 216 0 0 0 chr12 132972531 132972555 -11309934 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2400 88 3 0 chr12 132972712 132973017 -11309472 + AluSp SINE Alu 1 306 -7 2135 112 0 10 chr12 132973474 132973777 -11308712 - AluSg SINE Alu -10 300 1 249 305 148 43 chr12 132973777 132973881 -11308608 + MIR SINE MIR 5 97 -165 2222 99 6 19 chr12 132973881 132974195 -11308294 - AluSp SINE Alu -3 310 1 1772 110 20 12 chr12 132974202 132974456 -11308033 - AluSx SINE Alu -23 289 34 249 305 148 43 chr12 132974456 132974553 -11307936 + MIR SINE MIR 102 236 -26 2120 134 0 0 chr12 132974586 132974877 -11307612 + AluSx SINE Alu 1 291 -21 2128 87 43 0 chr12 132974897 132975173 -11307316 + AluSp SINE Alu 1 288 -25 2152 121 3 0 chr12 132975534 132975823 -11306666 + AluSx SINE Alu 2 291 -21 905 122 7 0 chr12 132975825 132975972 -11306517 + (TA)n Simple_repeat Simple_repeat 2 149 0 1676 165 99 33 chr12 132975972 132976336 -11306153 - MSTB LTR MaLR -37 389 2 2286 123 0 0 chr12 132976357 132976667 -11305822 - AluSx SINE Alu -2 310 1 183 228 102 142 chr12 132977243 132977269 -11305220 + MER5A DNA MER1_type 1 27 -162 1542 205 0 21 chr12 132977269 132977557 -11304932 + AluJo SINE Alu 1 282 -30 183 228 102 142 chr12 132977557 132977627 -11304862 + MER5A DNA MER1_type 27 98 -91 2532 51 7 0 chr12 132977627 132977922 -11304567 + AluY SINE Alu 1 297 -14 183 228 102 142 chr12 132977922 132978021 -11304468 + MER5A DNA MER1_type 98 189 0 249 147 0 0 chr12 132978075 132978109 -11304380 - MER8 DNA MER2_type -1 238 205 1324 213 76 54 chr12 132978122 132978258 -11304231 - Charlie1a DNA MER1_type -1336 1425 1293 1760 163 48 3 chr12 132978258 132978553 -11303936 + AluJo SINE Alu 1 308 -4 396 0 0 0 chr12 132978553 132978597 -11303892 + (TA)n Simple_repeat Simple_repeat 2 45 0 1324 213 76 54 chr12 132978597 132978931 -11303558 - Charlie1a DNA MER1_type -1467 1294 1 1807 176 0 3 chr12 132978953 132979243 -11303246 + AluJb SINE Alu 1 289 -23 671 172 86 8 chr12 132979294 132979422 -11303067 - FLAM_C SINE Alu 0 143 6 2236 118 7 0 chr12 132979836 132980141 -11302348 - AluSx SINE Alu -5 307 1 312 274 204 33 chr12 132980162 132980524 -11301965 + L2 LINE L2 235 658 -2656 313 336 0 29 chr12 132980928 132981068 -11301421 + C-rich Low_complexity Low_complexity 5 140 0 21 0 0 0 chr12 132981617 132981638 -11300851 + AT_rich Low_complexity Low_complexity 1 21 0 1587 100 9 22 chr12 132981674 132981903 -11300586 + AluSg/x SINE Alu 84 309 -1 1725 128 103 11 chr12 132981909 132982191 -11300298 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr12 132982260 132982281 -11300208 + AT_rich Low_complexity Low_complexity 1 21 0 2016 113 11 3 chr12 132982291 132982598 -11299891 + AluSx SINE Alu 1 309 0 2003 116 53 0 chr12 132983195 132983479 -11299010 - AluSx SINE Alu -13 299 1 2028 173 18 0 chr12 132983555 132983896 -11298593 - MER7A DNA MER2_type 0 346 2 2195 96 10 10 chr12 132983933 132984234 -11298255 - AluSx SINE Alu -11 301 1 2111 109 3 22 chr12 132985626 132985939 -11296550 - AluSc SINE Alu 0 309 3 360 0 0 0 chr12 132985952 132985992 -11296497 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1956 106 78 11 chr12 132986176 132986458 -11296031 - AluSq SINE Alu -12 301 1 2189 113 3 3 chr12 132986459 132986752 -11295737 - AluSx SINE Alu -19 293 1 1202 241 166 19 chr12 132987269 132987892 -11294597 - L2 LINE L2 -92 3221 2504 2314 101 0 0 chr12 132989555 132989851 -11292638 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr12 132990199 132990222 -11292267 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 132990444 132990464 -11292025 + (A)n Simple_repeat Simple_repeat 1 20 0 1604 169 16 62 chr12 132990993 132991196 -11291293 - AluJo SINE Alu -5 307 123 2183 128 7 0 chr12 132991196 132991501 -11290988 + AluSx SINE Alu 1 307 -5 1604 169 16 62 chr12 132991501 132991617 -11290872 - AluJo SINE Alu -189 123 3 2404 73 0 19 chr12 132991764 132992078 -11290411 + AluSc SINE Alu 1 308 -1 1760 128 103 7 chr12 132992084 132992365 -11290124 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr12 132992434 132992455 -11290034 + AT_rich Low_complexity Low_complexity 1 21 0 2094 113 7 0 chr12 132992465 132992772 -11289717 + AluSx SINE Alu 1 309 0 2003 116 53 0 chr12 132993369 132993653 -11288836 - AluSx SINE Alu -13 299 1 2028 173 18 0 chr12 132993729 132994070 -11288419 - MER7A DNA MER2_type 0 346 2 2267 93 7 10 chr12 132994107 132994409 -11288080 - AluSx SINE Alu -11 301 1 2537 93 0 0 chr12 132995802 132996115 -11286374 - AluSq SINE Alu 0 313 1 1163 163 41 86 chr12 132996434 132996580 -11285909 + MER33 DNA MER1_type 1 152 -2433 1883 158 17 0 chr12 132996580 132996877 -11285612 + AluJo SINE Alu 1 302 -10 1163 163 41 86 chr12 132996877 132997068 -11285421 + MER33 DNA MER1_type 152 323 -1 2266 95 27 0 chr12 132997170 132997464 -11285025 - AluSq SINE Alu -11 302 1 264 293 34 61 chr12 132997609 132997756 -11284733 - MER5A DNA MER1_type 0 189 47 742 173 0 8 chr12 132997967 132998094 -11284395 + FLAM_C SINE Alu 1 126 -7 180 326 51 41 chr12 132998714 132998812 -11283677 + L2 LINE L2 3132 3230 -42 1751 141 67 18 chr12 132999208 132999492 -11282997 - AluJb SINE Alu -14 298 1 2566 75 0 0 chr12 132999811 133000117 -11282372 - AluSp SINE Alu -7 306 1 1085 224 50 12 chr12 133000171 133000412 -11282077 + MIR SINE MIR 12 261 -1 1991 148 0 0 chr12 133000527 133000832 -11281657 - AluSx SINE Alu -5 307 3 859 71 9 0 chr12 133003438 133003551 -11278938 - AluSx SINE Alu -123 189 76 250 179 0 0 chr12 133003551 133003590 -11278899 - AluSx SINE Alu -213 90 52 2220 109 0 0 chr12 133003922 133004235 -11278254 - AluSq SINE Alu 0 313 1 22 0 0 0 chr12 133005181 133005203 -11277286 + AT_rich Low_complexity Low_complexity 1 22 0 2266 84 3 0 chr12 133006089 133006387 -11276102 - AluSx SINE Alu -13 299 1 787 133 0 44 chr12 133006906 133007041 -11275448 + FLAM_C SINE Alu 5 133 0 1293 201 11 4 chr12 133007125 133007389 -11275100 + AluJo SINE Alu 34 299 -13 1410 186 49 0 chr12 133007394 133007657 -11274832 + AluJb SINE Alu 20 295 -17 2095 102 0 0 chr12 133007662 133007957 -11274532 - AluSx SINE Alu -13 299 5 2024 107 3 10 chr12 133008144 133008442 -11274047 + AluSx SINE Alu 2 297 -15 912 114 30 0 chr12 133009556 133009687 -11272802 + AluSq/x SINE Alu 1 135 -178 1802 106 4 0 chr12 133009688 133009942 -11272547 - AluSx SINE Alu -57 255 1 314 256 88 44 chr12 133009967 133010104 -11272385 + L1ME LINE L1 4930 5072 -1074 376 248 149 6 chr12 133010111 133010156 -11272333 + L1ME LINE L1 5156 5193 -953 195 69 0 0 chr12 133010156 133010185 -11272304 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 376 248 149 6 chr12 133010185 133010300 -11272189 + L1ME LINE L1 5193 5339 -807 1693 151 63 3 chr12 133010303 133010588 -11271901 + AluSx SINE Alu 1 302 -10 2555 42 0 0 chr12 133010642 133010951 -11271538 + AluY SINE Alu 1 309 -2 859 172 0 0 chr12 133010951 133011102 -11271387 + AluSg/x SINE Alu 134 284 -28 586 231 8 8 chr12 133011146 133011263 -11271226 - FLAM_C SINE Alu -16 117 1 516 265 11 53 chr12 133011263 133011313 -11271176 + L1ME LINE L1 5465 5516 -646 692 198 0 16 chr12 133011313 133011465 -11271024 - FLAM_A SINE Alu 0 150 1 516 265 11 53 chr12 133011465 133011602 -11270887 + L1ME LINE L1 5516 5645 -517 1436 165 58 8 chr12 133011621 133011881 -11270608 - AluJo SINE Alu -39 273 1 22 0 0 0 chr12 133012178 133012200 -11270289 + AT_rich Low_complexity Low_complexity 1 22 0 795 160 0 47 chr12 133012287 133012437 -11270052 + AluJo SINE Alu 1 143 -169 771 185 30 0 chr12 133012461 133012596 -11269893 + AluJo SINE Alu 112 250 -62 1172 157 10 5 chr12 133012596 133012643 -11269846 + AluSg/x SINE Alu 85 130 -196 2409 61 0 0 chr12 133012643 133012939 -11269550 + AluSx SINE Alu 1 296 -16 1172 157 10 5 chr12 133012939 133013132 -11269357 + AluSg/x SINE Alu 130 326 0 488 276 124 23 chr12 133013163 133013380 -11269109 - L1MD2 LINE L1 0 6359 6121 4397 149 30 43 chr12 133013387 133013416 -11269073 - L1MB8 LINE L1 -5 6173 6145 2256 100 0 6 chr12 133013416 133013727 -11268762 + AluSc SINE Alu 1 309 0 4397 149 30 43 chr12 133013727 133014071 -11268418 - L1MB8 LINE L1 -33 6145 5798 1682 174 26 66 chr12 133014071 133014108 -11268381 - MLT1A1 LTR MaLR 0 365 328 2043 126 7 0 chr12 133014108 133014410 -11268079 + AluSx SINE Alu 9 312 0 1682 174 26 66 chr12 133014410 133014595 -11267894 - MLT1A1 LTR MaLR -37 328 161 1911 132 4 0 chr12 133014595 133014898 -11267591 - AluY SINE Alu 0 304 1 1682 174 26 66 chr12 133014898 133015053 -11267436 - MLT1A1 LTR MaLR -204 161 1 4397 149 30 43 chr12 133015053 133015087 -11267402 - L1MB8 LINE L1 -380 5798 5765 1860 130 0 44 chr12 133015087 133015403 -11267086 - AluSx SINE Alu -8 304 3 1924 151 0 7 chr12 133015412 133015717 -11266772 - AluJo SINE Alu -9 303 1 4397 149 30 43 chr12 133015717 133016187 -11266302 - L1MB8 LINE L1 -421 5757 5295 2184 91 16 7 chr12 133016206 133016513 -11265976 + AluSp SINE Alu 4 313 0 1999 132 0 0 chr12 133016522 133016817 -11265672 + AluSx SINE Alu 1 295 -17 753 153 0 9 chr12 133016818 133016929 -11265560 - AluJo/FLAM SINE Alu -201 111 2 277 118 20 0 chr12 133016930 133016981 -11265508 - L1M4 LINE L1 -812 5334 5283 812 137 0 0 chr12 133016981 133017105 -11265384 + FLAM_C SINE Alu 1 124 -19 444 167 26 0 chr12 133017124 133017202 -11265287 + FLAM SINE Alu 41 120 -23 1863 131 0 0 chr12 133017271 133017546 -11264943 + AluSx SINE Alu 1 275 -37 220 222 24 32 chr12 133017664 133017790 -11264699 + (CCAA)n Simple_repeat Simple_repeat 1 125 0 1804 168 3 0 chr12 133018159 133018456 -11264033 + AluSx SINE Alu 1 298 -14 2187 102 3 0 chr12 133018456 133018760 -11263729 + AluSq SINE Alu 1 305 -8 1532 192 10 3 chr12 133019140 133019448 -11263041 + AluJo SINE Alu 1 310 -2 2115 125 0 0 chr12 133019929 133020232 -11262257 - AluSq SINE Alu -10 303 1 1499 106 14 5 chr12 133020314 133020532 -11261957 - AluSg/x SINE Alu -12 300 81 180 0 0 0 chr12 133020532 133020552 -11261937 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr12 133020773 133020796 -11261693 + AT_rich Low_complexity Low_complexity 1 23 0 1632 175 26 3 chr12 133021527 133021830 -11260659 + AluJo SINE Alu 1 310 -2 2137 104 13 0 chr12 133021949 133022256 -11260233 + AluSq SINE Alu 1 311 -2 1310 134 10 5 chr12 133023383 133023584 -11258905 + AluSx SINE Alu 1 202 -110 494 165 18 18 chr12 133023684 133023793 -11258696 - L1MB8 LINE L1 -24 6154 6046 341 219 0 0 chr12 133023826 133023890 -11258599 - L1MB8 LINE L1 -116 6062 5999 288 165 152 51 chr12 133023895 133023974 -11258515 + AluJb SINE Alu 36 122 -180 2134 164 84 57 chr12 133023974 133024232 -11258257 - L1MB8 LINE L1 -231 5947 5698 2072 121 0 0 chr12 133024232 133024529 -11257960 - AluSq SINE Alu -16 297 1 2134 164 84 57 chr12 133024529 133024782 -11257707 - L1MB8 LINE L1 -480 5698 5422 559 118 89 67 chr12 133024908 133024943 -11257546 - L1MA8 LINE L1 -87 6204 6171 2371 84 0 0 chr12 133024943 133025241 -11257248 - AluSq SINE Alu -15 298 1 559 118 89 67 chr12 133025241 133025340 -11257149 - L1MA8 LINE L1 -120 6171 6067 21 36 0 0 chr12 133025419 133025447 -11257042 + AT_rich Low_complexity Low_complexity 1 28 0 766 109 73 0 chr12 133025451 133025561 -11256928 - AluJb SINE Alu -194 118 1 21 0 0 0 chr12 133025617 133025638 -11256851 + AT_rich Low_complexity Low_complexity 1 21 0 1631 123 52 11 chr12 133025714 133025982 -11256507 - AluSx SINE Alu -14 298 20 2124 83 0 11 chr12 133026001 133026278 -11256211 + AluSq SINE Alu 1 274 -39 22 0 0 0 chr12 133026384 133026406 -11256083 + AT_rich Low_complexity Low_complexity 1 22 0 208 319 190 31 chr12 133026631 133026794 -11255695 + MIR3 SINE MIR 14 202 -6 2144 61 0 0 chr12 133027973 133028235 -11254254 + AluY SINE Alu 1 262 -49 1509 151 3 76 chr12 133028331 133028464 -11254025 + AluJo SINE Alu 1 142 -170 2399 71 0 0 chr12 133028464 133028773 -11253716 + AluY SINE Alu 1 309 -2 1509 151 3 76 chr12 133028773 133028956 -11253533 + AluJo SINE Alu 142 294 -18 254 281 0 0 chr12 133028956 133029013 -11253476 - L3 LINE CR1 -20 1557 1501 1311 178 63 28 chr12 133029096 133029382 -11253107 - AluJo SINE Alu -16 296 1 280 81 0 0 chr12 133029435 133029472 -11253017 + Charlie4 DNA MER1_type 99 135 -1826 1943 88 3 54 chr12 133029981 133030296 -11252193 + AluSg SINE Alu 1 300 0 1037 236 110 0 chr12 133030309 133030563 -11251926 + AluJo SINE Alu 8 289 -23 1156 78 0 0 chr12 133030595 133030748 -11251741 - AluSg/x SINE Alu 0 312 160 24 0 0 0 chr12 133030756 133030780 -11251709 + AT_rich Low_complexity Low_complexity 1 24 0 2118 108 3 0 chr12 133030791 133031086 -11251403 + AluSx SINE Alu 1 296 -16 306 122 0 0 chr12 133031145 133031186 -11251303 + AluY SINE Alu 6 46 -255 1641 95 4 4 chr12 133031293 133031536 -11250953 + AluY SINE Alu 31 273 -38 301 267 14 20 chr12 133031615 133031761 -11250728 + L1MC5 LINE L1 7592 7736 -225 1636 182 0 22 chr12 133031897 133032215 -11250274 + AluSx SINE Alu 1 311 -1 2278 100 0 3 chr12 133032256 133032567 -11249922 + AluSg SINE Alu 1 310 0 1646 159 3 11 chr12 133032581 133032864 -11249625 + AluJb SINE Alu 24 304 -8 860 186 76 12 chr12 133033288 133033460 -11249029 - AluJo SINE Alu -129 183 1 2138 80 0 27 chr12 133033538 133033839 -11248650 + AluY SINE Alu 1 293 -18 1977 128 3 3 chr12 133033932 133034222 -11248267 + AluSq SINE Alu 1 290 -23 1811 142 14 0 chr12 133034325 133034620 -11247869 - AluSx SINE Alu -13 299 1 450 217 76 0 chr12 133034685 133034777 -11247712 - L2 LINE L2 -7 3306 3208 2153 94 3 7 chr12 133034980 133035278 -11247211 + AluSg SINE Alu 1 297 -13 231 152 38 0 chr12 133035307 133035386 -11247103 + (TA)n Simple_repeat Simple_repeat 1 82 0 484 200 192 0 chr12 133035386 133035506 -11246983 - FRAM SINE Alu -23 153 11 192 239 0 99 chr12 133035696 133035767 -11246722 + L3 LINE CR1 1514 1577 0 2051 110 0 0 chr12 133035886 133036191 -11246298 + AluSx SINE Alu 1 305 0 718 105 0 0 chr12 133036192 133036287 -11246202 + AluS SINE Alu 2 96 -217 2068 113 3 10 chr12 133036287 133036580 -11245909 + AluSg SINE Alu 1 291 -19 1515 119 18 113 chr12 133036587 133036706 -11245783 + AluSp SINE Alu 1 130 -183 264 30 0 0 chr12 133036706 133036739 -11245750 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1515 119 18 113 chr12 133036739 133036947 -11245542 + AluSp SINE Alu 130 297 -16 1025 185 69 22 chr12 133036955 133037187 -11245302 + L1MB7 LINE L1 5675 5917 -267 933 120 0 0 chr12 133037189 133037322 -11245167 + AluSq/x SINE Alu 1 133 -180 344 200 24 47 chr12 133037452 133037537 -11244952 - L1MB8 LINE L1 -116 6062 5980 1757 86 4 0 chr12 133037540 133037773 -11244716 + AluSg/x SINE Alu 67 300 -12 243 125 0 0 chr12 133037773 133037813 -11244676 + (TG)n Simple_repeat Simple_repeat 2 41 0 325 304 52 17 chr12 133037921 133038036 -11244453 - L2 LINE L2 -8 3305 3187 2167 110 0 7 chr12 133038060 133038370 -11244119 + AluY SINE Alu 1 308 -3 2154 97 0 0 chr12 133038400 133038690 -11243799 + AluSx SINE Alu 1 290 -22 2202 123 0 0 chr12 133038806 133039114 -11243375 + AluSx SINE Alu 1 308 -4 1951 117 37 3 chr12 133039121 133039419 -11243070 + AluSx SINE Alu 1 308 -4 801 110 85 0 chr12 133039464 133039582 -11242907 + AluJo/FLAM SINE Alu 1 128 -174 2374 84 0 0 chr12 133039584 133039894 -11242595 + AluY SINE Alu 1 310 -1 613 107 12 0 chr12 133040011 133040095 -11242394 - AluS SINE Alu -213 99 15 1692 184 0 0 chr12 133040112 133040400 -11242089 - AluJo SINE Alu -19 293 6 738 190 200 5 chr12 133040403 133040608 -11241881 + MLT1C LTR MaLR 152 396 -71 265 125 0 0 chr12 133040612 133040652 -11241837 + Alu SINE Alu 1 40 -261 647 121 0 0 chr12 133040653 133040744 -11241745 + AluSg/x SINE Alu 206 296 -13 295 167 36 83 chr12 133040747 133040831 -11241658 + MLT1B LTR MaLR 308 387 -3 1546 169 7 20 chr12 133041111 133041406 -11241083 - AluJb SINE Alu -21 291 1 2112 115 0 3 chr12 133041469 133041773 -11240716 - AluSx SINE Alu -9 303 1 551 175 7 73 chr12 133041908 133042045 -11240444 - FLAM_A SINE Alu -5 128 1 1503 173 47 23 chr12 133042049 133042349 -11240140 - AluJo SINE Alu -5 307 1 1768 125 4 0 chr12 133042361 133042633 -11239856 - AluSx SINE Alu 0 312 40 324 155 37 18 chr12 133042778 133043025 -11239464 + AluJ SINE Alu 1 293 -9 1851 145 6 19 chr12 133043244 133043555 -11238934 - AluSx SINE Alu -1 311 5 1834 146 3 35 chr12 133043861 133044177 -11238312 - AluJo SINE Alu -6 306 1 962 257 53 45 chr12 133044393 133044751 -11237738 - L2 LINE L2 -4 3309 2949 2455 60 0 0 chr12 133044836 133045137 -11237352 + AluY SINE Alu 1 301 -10 854 163 41 0 chr12 133045171 133045318 -11237171 - FRAM SINE Alu -18 158 6 371 240 72 16 chr12 133045497 133045622 -11236867 - L1MC4 LINE L1 -6 8036 7905 1536 161 24 27 chr12 133045642 133045940 -11236549 - AluJb SINE Alu -15 297 1 1669 137 72 4 chr12 133045957 133046235 -11236254 - AluJo SINE Alu -15 297 1 981 298 86 10 chr12 133046259 133046642 -11235847 + L2 LINE L2 1827 2238 -1076 2175 72 7 20 chr12 133046661 133046954 -11235535 - AluSp SINE Alu -24 289 1 284 105 0 0 chr12 133046986 133047024 -11235465 - LTR23 LTR ERV1 -79 358 321 437 254 21 28 chr12 133047050 133047192 -11235297 + L2 LINE L2 2265 2405 -909 1370 64 0 0 chr12 133047213 133047384 -11235105 - AluY SINE Alu -14 297 127 818 284 64 7 chr12 133047391 133047673 -11234816 + L2 LINE L2 2423 2720 -594 1347 106 67 0 chr12 133047673 133047927 -11234562 + AluSg SINE Alu 1 271 -39 2221 113 0 0 chr12 133048072 133048374 -11234115 - AluY SINE Alu -9 302 1 330 202 66 104 chr12 133048655 133048708 -11233781 + HAL1 LINE L1 2264 2317 -190 1907 169 0 6 chr12 133048708 133049021 -11233468 - AluJb SINE Alu -1 311 1 330 202 66 104 chr12 133049021 133049150 -11233339 + HAL1 LINE L1 2317 2439 -68 1915 150 13 7 chr12 133049195 133049495 -11232994 - AluJo SINE Alu -8 304 3 1647 164 0 48 chr12 133049548 133049689 -11232800 + AluJo SINE Alu 1 147 -165 1987 130 18 0 chr12 133049689 133050007 -11232482 + AluSx SINE Alu 1 323 0 1647 164 0 48 chr12 133050007 133050176 -11232313 + AluJo SINE Alu 147 297 -15 207 0 0 0 chr12 133050192 133050215 -11232274 + (TTG)n Simple_repeat Simple_repeat 2 24 0 660 186 35 0 chr12 133050223 133050336 -11232153 - FLAM_C SINE Alu -15 118 2 1859 110 29 77 chr12 133050339 133050649 -11231840 - AluSx SINE Alu -17 295 1 2343 76 17 0 chr12 133050877 133051166 -11231323 - AluSg SINE Alu -15 295 2 2390 91 3 0 chr12 133052316 133052614 -11229875 - AluSp SINE Alu -14 299 1 725 167 0 0 chr12 133052649 133052763 -11229726 + AluJb SINE Alu 5 118 -194 1649 112 58 12 chr12 133052800 133053042 -11229447 + AluSp SINE Alu 1 253 -60 2093 119 7 0 chr12 133053120 133053414 -11229075 + AluSq SINE Alu 1 296 -17 710 181 19 6 chr12 133053469 133053629 -11228860 - MER33 DNA MER1_type 0 363 202 1339 193 83 19 chr12 133053630 133053895 -11228594 + AluJo SINE Alu 1 282 -30 1962 118 0 79 chr12 133053899 133054214 -11228275 + AluSx SINE Alu 3 292 -20 842 158 41 23 chr12 133054234 133054405 -11228084 - MER33 DNA MER1_type -148 176 3 909 250 13 32 chr12 133054904 133055220 -11227269 - AluSq SINE Alu -1 312 3 1057 79 14 7 chr12 133055504 133055643 -11226846 + AluSc SINE Alu 157 296 -13 526 167 10 29 chr12 133055643 133055745 -11226744 + L1MB5 LINE L1 6029 6128 -46 829 173 7 0 chr12 133055749 133055888 -11226601 - FLAM_C SINE Alu -1 142 3 2286 113 7 0 chr12 133055903 133056205 -11226284 - AluSx SINE Alu -8 304 1 287 153 34 0 chr12 133056205 133056264 -11226225 + L1MB5 LINE L1 6114 6174 0 1486 191 21 21 chr12 133056376 133056658 -11225831 + AluJo SINE Alu 1 282 -30 387 0 0 0 chr12 133056661 133056704 -11225785 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1997 138 0 3 chr12 133056915 133057239 -11225250 - AluSx SINE Alu 0 323 1 1774 177 10 0 chr12 133057244 133057543 -11224946 - AluJo SINE Alu -8 304 3 225 0 0 0 chr12 133057659 133057684 -11224805 + (A)n Simple_repeat Simple_repeat 1 25 0 378 62 0 161 chr12 133057734 133057787 -11224702 - L1MB8 LINE L1 -16 6162 6125 2302 98 3 0 chr12 133057787 133058083 -11224406 + AluSp SINE Alu 1 297 -16 378 62 0 161 chr12 133058083 133058110 -11224379 - L1MB8 LINE L1 -53 6125 6095 451 123 0 97 chr12 133058122 133058174 -11224315 - L1MB4 LINE L1 0 6180 6143 682 188 8 8 chr12 133058174 133058307 -11224182 - FLAM_C SINE Alu 0 133 1 451 123 0 97 chr12 133058307 133058368 -11224121 - L1MB4 LINE L1 -37 6143 6078 239 31 31 0 chr12 133058538 133058570 -11223919 + Alu SINE Alu 247 279 -23 351 0 0 0 chr12 133058571 133058610 -11223879 + (CA)n Simple_repeat Simple_repeat 1 39 0 317 283 9 9 chr12 133059333 133059439 -11223050 + MLT1L LTR MaLR 348 453 -162 295 161 71 0 chr12 133059506 133059562 -11222927 + AluJ/FLAM SINE Alu 5 64 -238 1241 136 19 39 chr12 133059790 133059996 -11222493 - AluJb SINE Alu -108 204 3 2101 101 13 42 chr12 133060143 133060450 -11222039 - AluSx SINE Alu -14 298 1 2059 118 20 16 chr12 133060604 133060908 -11221581 - AluSg SINE Alu -5 305 1 648 86 0 0 chr12 133061004 133061097 -11221392 - AluSx SINE Alu -3 309 217 1151 133 6 6 chr12 133061097 133061263 -11221226 - AluSx SINE Alu -143 169 4 822 234 97 23 chr12 133061279 133061505 -11220984 - MLT1J1 LTR MaLR -167 279 30 1921 154 0 37 chr12 133061505 133061829 -11220660 + AluJb SINE Alu 1 312 0 822 234 97 23 chr12 133061829 133061859 -11220630 - MLT1J1 LTR MaLR -416 30 4 2337 98 10 0 chr12 133062448 133062753 -11219736 - AluSc SINE Alu 0 309 2 1817 102 125 0 chr12 133063713 133063977 -11218512 - AluSc SINE Alu -2 297 1 1014 103 14 0 chr12 133064070 133064216 -11218273 - AluSg/x SINE Alu -6 304 157 2097 106 11 7 chr12 133064316 133064622 -11217867 - AluSx SINE Alu 0 307 1 333 188 130 0 chr12 133064639 133064708 -11217781 - AluJ/FLAM SINE Alu -222 80 3 2034 132 3 3 chr12 133064731 133065020 -11217469 - AluSq SINE Alu -24 289 1 626 241 0 0 chr12 133065040 133065156 -11217333 - FLAM_A SINE Alu -21 121 6 220 251 4 31 chr12 133065201 133065277 -11217212 - MIR SINE MIR -77 131 56 2067 95 0 0 chr12 133065417 133065681 -11216808 - AluSg1 SINE Alu -45 264 1 2278 107 0 0 chr12 133065811 133066102 -11216387 - AluSx SINE Alu -21 291 1 2618 43 0 3 chr12 133066137 133066439 -11216050 - AluY SINE Alu -10 301 1 29 0 0 0 chr12 133066546 133066575 -11215914 + AT_rich Low_complexity Low_complexity 1 29 0 1143 147 0 28 chr12 133066575 133066752 -11215737 - AluSg/x SINE Alu -24 286 115 2162 111 7 7 chr12 133066874 133067180 -11215309 + AluSq SINE Alu 1 306 -7 1837 166 0 34 chr12 133067189 133067509 -11214980 + AluJo SINE Alu 1 309 -3 658 169 11 38 chr12 133068453 133068637 -11213852 + GA-rich Low_complexity Low_complexity 2 180 0 1027 131 6 31 chr12 133068642 133068802 -11213687 + AluSg SINE Alu 1 156 -154 2066 137 3 13 chr12 133068886 133069200 -11213289 - AluSx SINE Alu -1 311 1 261 145 16 16 chr12 133069250 133069312 -11213177 + L1M4 LINE L1 4450 4511 -1635 2427 57 0 3 chr12 133069313 133069619 -11212870 + AluY SINE Alu 1 305 0 2146 125 7 0 chr12 133069639 133069943 -11212546 + AluSx SINE Alu 1 306 -6 954 177 0 18 chr12 133069943 133070107 -11212382 - FRAM SINE Alu -23 153 1 1211 193 0 0 chr12 133070165 133070362 -11212127 + AluSg/x SINE Alu 84 280 -30 2577 48 0 0 chr12 133070417 133070710 -11211779 + AluY SINE Alu 1 293 -18 967 129 0 0 chr12 133070731 133070863 -11211626 + AluSq/x SINE Alu 1 132 -181 2313 100 0 7 chr12 133070866 133071166 -11211323 + AluSg SINE Alu 1 298 -12 398 146 0 0 chr12 133071231 133071286 -11211203 + AluJ/FLAM SINE Alu 23 77 -225 201 301 82 14 chr12 133071286 133071432 -11211057 - L2 LINE L2 -1155 2159 2004 981 199 16 0 chr12 133071450 133071636 -11210853 - MLT1H LTR MaLR -2 547 359 2902 3 3 0 chr12 133071669 133071979 -11210510 - AluYa5 SINE Alu 0 311 1 2132 95 35 0 chr12 133071981 133072264 -11210225 - AluSp SINE Alu -20 293 1 222 352 0 0 chr12 133072338 133072409 -11210080 + L2 LINE L2 1848 1918 -1396 1984 96 107 4 chr12 133072637 133072917 -11209572 + AluSx SINE Alu 1 309 -3 864 162 0 0 chr12 133072937 133073073 -11209416 + FLAM_C SINE Alu 6 141 -2 634 128 11 0 chr12 133073297 133073391 -11209098 - AluS SINE Alu -217 96 2 2055 127 3 13 chr12 133073887 133074187 -11208302 + AluSx SINE Alu 1 297 -15 2278 77 13 26 chr12 133074187 133074499 -11207990 + AluY SINE Alu 1 308 -3 1815 128 4 0 chr12 133075079 133075328 -11207161 + AluSx SINE Alu 1 250 -62 2045 104 7 0 chr12 133075359 133075638 -11206851 + AluSx SINE Alu 1 281 -31 1086 146 0 23 chr12 133075733 133075904 -11206585 + AluJo SINE Alu 2 168 -144 529 296 74 0 chr12 133076748 133076910 -11205579 - MIR3 SINE MIR -5 203 30 1632 149 45 0 chr12 133077009 133077251 -11205238 + AluJb SINE Alu 11 263 -49 237 29 0 0 chr12 133077306 133077341 -11205148 + AluJb SINE Alu 268 302 0 1960 108 41 0 chr12 133077550 133077819 -11204670 + AluSq SINE Alu 21 300 -13 2272 76 17 10 chr12 133078000 133078302 -11204187 - AluY SINE Alu -7 304 1 1890 156 7 3 chr12 133078598 133078893 -11203596 - AluSx SINE Alu -16 296 1 1801 72 0 30 chr12 133078901 133079160 -11203329 - AluY SINE Alu 0 306 55 1050 144 0 0 chr12 133079228 133079374 -11203115 + AluJb SINE Alu 137 282 -30 2267 99 6 10 chr12 133079438 133079751 -11202738 + AluSx SINE Alu 1 312 0 268 332 109 24 chr12 133079784 133079995 -11202494 + MIR SINE MIR 8 236 -26 215 183 17 17 chr12 133080146 133080206 -11202283 + MIR SINE MIR 94 153 -109 2375 93 3 0 chr12 133080862 133081163 -11201326 - AluSq SINE Alu -11 302 1 2222 92 7 7 chr12 133081199 133081494 -11200995 + AluSp SINE Alu 1 295 -18 2299 110 7 0 chr12 133083391 133083691 -11198798 - AluSx SINE Alu -10 302 1 2168 107 10 0 chr12 133083710 133084001 -11198488 - AluSx SINE Alu -18 294 1 244 308 115 0 chr12 133084001 133084131 -11198358 + L2 LINE L2 2234 2378 -936 1023 121 13 6 chr12 133084963 133085120 -11197369 + AluSp SINE Alu 152 309 -4 326 195 142 44 chr12 133086084 133086197 -11196292 - MER5A DNA MER1_type -28 161 38 203 284 0 45 chr12 133086127 133086215 -11196274 + MER5A DNA MER1_type 97 180 -9 * 2157 132 3 3 chr12 133086376 133086679 -11195810 - AluSq SINE Alu -10 303 1 950 205 0 0 chr12 133087329 133087495 -11194994 - AluJo SINE Alu -146 166 1 1738 169 3 10 chr12 133087857 133088159 -11194330 - AluJb SINE Alu -12 300 1 918 141 0 0 chr12 133088159 133088294 -11194195 - AluSq/x SINE Alu -177 135 1 21 0 0 0 chr12 133089164 133089185 -11193304 + AT_rich Low_complexity Low_complexity 1 21 0 229 188 72 43 chr12 133090640 133090709 -11191780 + L2 LINE L2 2721 2791 -523 2121 126 0 0 chr12 133090764 133091057 -11191432 - AluSx SINE Alu -19 293 1 224 206 172 1 chr12 133091078 133091155 -11191334 + MIR SINE MIR 59 146 -62 402 276 276 13 chr12 133091201 133091512 -11190977 + L2 LINE L2 2906 3298 -15 185 331 169 16 chr12 133091576 133091700 -11190789 - L3 LINE CR1 -5 1572 1430 186 291 48 86 chr12 133091755 133091965 -11190524 - L3 LINE CR1 -159 1418 1217 222 150 0 0 chr12 133092019 133092059 -11190430 + (TA)n Simple_repeat Simple_repeat 1 40 0 1636 169 25 54 chr12 133092059 133092223 -11190266 - AluJo SINE Alu -7 305 153 2058 138 3 3 chr12 133092223 133092519 -11189970 - AluSx SINE Alu -16 296 1 1636 169 25 54 chr12 133092519 133092668 -11189821 - AluJo SINE Alu -159 153 1 2446 87 0 0 chr12 133092779 133093077 -11189412 + AluSg SINE Alu 2 299 -11 527 228 100 28 chr12 133093149 133093329 -11189160 - L3 LINE CR1 -737 840 648 24 0 0 0 chr12 133094156 133094180 -11188309 + AT_rich Low_complexity Low_complexity 1 24 0 197 213 0 0 chr12 133095516 133095563 -11186926 + MIR3 SINE MIR 153 199 -9 1982 99 0 0 chr12 133095568 133095820 -11186669 + AluSq SINE Alu 50 301 -12 2304 104 3 0 chr12 133095820 133096117 -11186372 + AluSp SINE Alu 1 299 -14 417 279 55 24 chr12 133096694 133096859 -11185630 - MIR SINE MIR -90 172 3 1603 182 10 0 chr12 133097143 133097434 -11185055 - AluSx SINE Alu -13 299 6 1204 91 0 6 chr12 133097703 133097868 -11184621 - AluSg/x SINE Alu -23 287 124 2259 89 0 19 chr12 133097868 133098184 -11184305 - AluY SINE Alu -1 310 1 2116 90 3 27 chr12 133098543 133098843 -11183646 + AluSg SINE Alu 1 293 -17 266 108 0 0 chr12 133098844 133098881 -11183608 + Alu SINE Alu 1 37 -265 1503 185 63 0 chr12 133099113 133099399 -11183090 + AluJo SINE Alu 1 304 -8 1760 89 111 0 chr12 133099545 133099816 -11182673 - AluSq SINE Alu -12 301 1 267 183 6 0 chr12 133099840 133099896 -11182593 - AluSp SINE Alu -133 170 118 2073 64 3 92 chr12 133100657 133100983 -11181506 - AluSg SINE Alu -13 297 1 1226 87 0 0 chr12 133101084 133101256 -11181233 + AluSq SINE Alu 138 309 -4 1608 139 44 7 chr12 133101290 133101586 -11180903 + AluSx SINE Alu 1 306 0 224 188 0 47 chr12 133102095 133102159 -11180330 + C-rich Low_complexity Low_complexity 3 63 0 1433 148 53 3 chr12 133102748 133103031 -11179458 + AluJo SINE Alu 1 297 -15 919 185 82 0 chr12 133103156 133103188 -11179301 + AluJo SINE Alu 85 113 -199 363 73 0 0 chr12 133103188 133103243 -11179246 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 919 185 82 0 chr12 133103243 133103394 -11179095 + AluJo SINE Alu 113 283 -29 234 191 0 0 chr12 133103394 133103441 -11179048 + (CA)n Simple_repeat Simple_repeat 1 47 0 1761 170 0 10 chr12 133103441 133103752 -11178737 + AluSx SINE Alu 1 308 -4 1393 189 78 69 chr12 133103764 133104169 -11178320 - MLT1C LTR MaLR -2 465 54 1901 120 23 3 chr12 133104169 133104468 -11178021 - AluSx SINE Alu -7 305 1 1393 189 78 69 chr12 133104468 133104523 -11177966 - MLT1C LTR MaLR -413 54 1 1849 146 0 17 chr12 133104633 133104935 -11177554 - AluJb SINE Alu -15 297 1 1616 144 13 50 chr12 133104938 133105237 -11177252 - AluJo SINE Alu -24 288 1 1257 267 63 39 chr12 133105257 133105699 -11176790 - MER21B LTR ERV1 -50 813 361 2247 49 0 18 chr12 133105746 133106058 -11176431 - AluY SINE Alu 0 307 1 2261 66 26 10 chr12 133106081 133106386 -11176103 - AluY SINE Alu -1 310 1 924 138 0 25 chr12 133106386 133106546 -11175943 - AluJb SINE Alu -1 311 156 1078 226 103 11 chr12 133106565 133106826 -11175663 - MER21B LTR ERV1 -558 305 21 300 160 8 202 chr12 133106835 133106926 -11175563 - MER21B LTR ERV1 -767 96 32 1982 127 10 0 chr12 133106926 133107226 -11175263 - AluSx SINE Alu -9 303 1 300 160 8 202 chr12 133107226 133107253 -11175236 - MER21B LTR ERV1 -831 32 1 250 296 28 0 chr12 133107253 133107320 -11175169 - MLT1J LTR MaLR -249 262 194 781 211 21 0 chr12 133107320 133107462 -11175027 + FRAM SINE Alu 2 146 -30 414 0 0 0 chr12 133107464 133107510 -11174979 + (CA)n Simple_repeat Simple_repeat 2 47 0 420 244 159 40 chr12 133107510 133107686 -11174803 - MLT1J LTR MaLR -310 201 5 2095 106 3 3 chr12 133107889 133108200 -11174289 + AluSx SINE Alu 1 311 -1 1205 176 124 73 chr12 133108247 133108673 -11173816 + LTR7 LTR ERV1 1 448 -2 368 273 67 53 chr12 133108703 133108912 -11173577 + MLT1L LTR MaLR 363 574 -41 383 320 75 14 chr12 133109174 133109321 -11173168 + L1MC4a LINE L1 5510 5665 -2143 374 264 71 14 chr12 133109403 133109543 -11172946 + L1MC4a LINE L1 5679 5826 -1982 841 176 0 0 chr12 133109543 133109674 -11172815 + FLAM_C SINE Alu 1 131 -2 1940 126 14 0 chr12 133109694 133109987 -11172502 + AluSx SINE Alu 1 297 -15 870 116 33 0 chr12 133110389 133110510 -11171979 + AluSq/x SINE Alu 12 136 -176 1388 110 142 5 chr12 133110510 133110728 -11171761 - AluSg SINE Alu -57 253 6 1485 225 53 11 chr12 133111082 133111442 -11171047 + MER119 DNA MER1_type 3 377 -206 6467 60 22 52 chr12 133111452 133113300 -11169189 + SVA Other Other 1 1386 0 644 261 113 42 chr12 133113349 133113587 -11168902 + MIR SINE MIR 2 256 -6 2180 94 6 25 chr12 133113616 133113934 -11168555 + AluSx SINE Alu 1 312 0 236 296 0 0 chr12 133114885 133114939 -11167550 + polypurine Low_complexity Low_complexity 2 55 0 1251 154 129 50 chr12 133115135 133115415 -11167074 + AluJb SINE Alu 1 302 -10 1475 135 142 0 chr12 133116433 133116693 -11165796 + AluJb SINE Alu 5 301 -1 685 108 0 0 chr12 133116693 133116795 -11165694 + L1PB1 LINE L1 6050 6151 0 1347 100 0 0 chr12 133116803 133116983 -11165506 - AluSg/x SINE Alu -17 293 114 1849 128 27 14 chr12 133117292 133117589 -11164900 + AluSx SINE Alu 1 301 -11 1886 131 7 10 chr12 133118481 133118772 -11163717 - AluJb SINE Alu -14 298 9 3005 35 0 0 chr12 133118973 133119321 -11163168 + L1PA3 LINE L1 5805 6152 -3 22 0 0 0 chr12 133119714 133119736 -11162753 + AT_rich Low_complexity Low_complexity 1 22 0 1750 162 3 7 chr12 133119801 133120098 -11162391 + AluJo SINE Alu 1 296 -16 1992 120 17 0 chr12 133120105 133120396 -11162093 + AluSx SINE Alu 1 296 -16 806 210 68 0 chr12 133120399 133120561 -11161928 + AluJb SINE Alu 116 288 -24 1933 152 0 0 chr12 133120634 133120924 -11161565 + AluSx SINE Alu 1 290 -22 1460 151 163 4 chr12 133121811 133122069 -11160420 + AluJo SINE Alu 1 299 -3 200 403 0 47 chr12 133122535 133122664 -11159825 + MIR SINE MIR 59 181 -81 1516 149 50 0 chr12 133122735 133122976 -11159513 + AluSq SINE Alu 1 253 -60 26 0 0 0 chr12 133122976 133123002 -11159487 + AT_rich Low_complexity Low_complexity 1 26 0 2167 108 0 10 chr12 133123089 133123396 -11159093 - AluSx SINE Alu -8 304 1 1219 242 99 69 chr12 133123570 133123955 -11158534 - L2 LINE L2 -4 3309 2900 1908 155 3 0 chr12 133123955 133124264 -11158225 + AluSx SINE Alu 1 310 -2 1219 242 99 69 chr12 133124264 133124424 -11158065 - L2 LINE L2 -413 2900 2746 311 349 38 0 chr12 133124416 133124522 -11157967 + L2 LINE L2 3159 3268 -4 * 182 231 62 62 chr12 133124560 133124625 -11157864 - L3 LINE CR1 -356 1221 1157 1133 123 0 0 chr12 133124895 133125058 -11157431 + AluSg/x SINE Alu 146 308 -4 292 340 96 6 chr12 133125578 133125734 -11156755 - L2 LINE L2 -571 2743 2574 1826 120 6 44 chr12 133126072 133126213 -11156276 + AluSq SINE Alu 1 146 -167 2035 110 20 0 chr12 133126213 133126505 -11155984 + AluSp SINE Alu 3 300 -13 1826 120 6 44 chr12 133126505 133126680 -11155809 + AluSq SINE Alu 146 305 -8 725 148 0 0 chr12 133127070 133127192 -11155297 + L1PB1 LINE L1 6030 6151 0 2042 106 10 7 chr12 133127215 133127516 -11154973 + AluSx SINE Alu 1 302 -10 409 261 59 0 chr12 133127619 133127738 -11154751 + L1ME3A LINE L1 5517 5642 -479 429 191 0 18 chr12 133127955 133128065 -11154424 + L1ME3A LINE L1 5847 5954 -216 1186 158 124 11 chr12 133128142 133128407 -11154082 + AluSg SINE Alu 15 309 -1 1085 42 0 49 chr12 133128411 133128554 -11153935 + AluSc SINE Alu 1 136 -173 2281 84 0 0 chr12 133128554 133128850 -11153639 + AluSg SINE Alu 1 296 -14 2054 135 0 0 chr12 133129385 133129689 -11152800 - AluSx SINE Alu -8 304 1 1256 154 197 35 chr12 133129879 133130021 -11152468 - AluJb SINE Alu -1 301 183 1923 118 10 0 chr12 133130021 133130309 -11152180 - AluSq SINE Alu -22 291 1 1256 154 197 35 chr12 133130309 133130425 -11152064 - AluJb SINE Alu -119 183 1 456 176 14 0 chr12 133130449 133130523 -11151966 + tRNA-Asp-GAC tRNA tRNA 1 75 0 2169 84 0 13 chr12 133130543 133130842 -11151647 - AluY SINE Alu -16 295 1 2051 72 24 10 chr12 133131083 133131374 -11151115 - AluSg1 SINE Alu -14 295 1 2066 114 7 0 chr12 133132159 133132448 -11150041 - AluSx SINE Alu -16 296 6 1784 159 3 3 chr12 133132781 133132910 -11149579 + AluSq SINE Alu 3 131 -182 2192 81 3 0 chr12 133132910 133133224 -11149265 + AluSp SINE Alu 1 315 0 1784 159 3 3 chr12 133133224 133133395 -11149094 + AluSq SINE Alu 130 304 -9 1561 126 156 8 chr12 133133398 133133661 -11148828 + AluSx SINE Alu 1 302 0 1991 117 10 3 chr12 133133729 133134028 -11148461 + AluSx SINE Alu 1 301 -11 2201 97 0 0 chr12 133134033 133134323 -11148166 + AluSg SINE Alu 6 295 -15 21 36 0 0 chr12 133134353 133134381 -11148108 + AT_rich Low_complexity Low_complexity 1 28 0 1231 138 131 51 chr12 133134856 133135131 -11147358 + AluJo SINE Alu 16 312 0 570 223 112 25 chr12 133135857 133136008 -11146481 + MLT1D LTR MaLR 22 195 -310 1341 161 96 25 chr12 133136008 133136145 -11146344 + AluSx SINE Alu 1 127 -185 2001 110 14 0 chr12 133136145 133136435 -11146054 + AluSp SINE Alu 1 294 -19 1341 161 96 25 chr12 133136435 133136577 -11145912 + AluSx SINE Alu 127 300 -12 570 223 112 25 chr12 133136577 133136622 -11145867 + MLT1D LTR MaLR 195 235 -270 787 173 50 0 chr12 133136622 133136790 -11145699 + AluSg/x SINE Alu 137 311 0 375 215 61 149 chr12 133138072 133138286 -11144203 - MIR SINE MIR -56 206 12 187 245 78 78 chr12 133138426 133138528 -11143961 - MIR SINE MIR -93 169 68 2346 79 3 0 chr12 133138534 133138838 -11143651 + AluSx SINE Alu 1 305 -7 217 373 93 8 chr12 133138872 133138990 -11143499 - L2 LINE L2 -2126 1188 1061 1046 113 19 0 chr12 133138991 133139150 -11143339 - AluSc SINE Alu -13 296 135 3463 88 46 0 chr12 133139243 133139718 -11142771 + MER41A LTR ERV1 1 497 -57 1509 173 7 0 chr12 133139910 133140188 -11142301 + AluSx SINE Alu 3 282 -30 204 67 0 0 chr12 133140188 133140218 -11142271 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 580 261 71 58 chr12 133140285 133140511 -11141978 + MIR SINE MIR 33 261 -1 226 227 0 34 chr12 133141747 133141835 -11140654 + (CCG)n Simple_repeat Simple_repeat 2 86 0 27 29 0 0 chr12 133141875 133141909 -11140580 + GC_rich Low_complexity Low_complexity 1 34 0 36 87 0 0 chr12 133141946 133142038 -11140451 + GC_rich Low_complexity Low_complexity 1 92 0 1320 211 50 4 chr12 133143330 133143609 -11138880 + AluJb SINE Alu 1 292 -20 281 311 119 70 chr12 133143657 133143901 -11138588 - MIR SINE MIR -3 259 4 2093 108 3 0 chr12 133144306 133144603 -11137886 - AluSx SINE Alu -14 298 1 245 256 11 33 chr12 133144695 133144785 -11137704 + L1MC/D LINE L1 5649 5736 -2072 501 204 130 0 chr12 133144785 133144893 -11137596 + FLAM_A SINE Alu 1 122 -11 23 0 0 0 chr12 133145711 133145734 -11136755 + AT_rich Low_complexity Low_complexity 1 23 0 2406 77 0 3 chr12 133145744 133146043 -11136446 + AluSx SINE Alu 1 298 -14 1200 112 91 25 chr12 133146273 133146470 -11136019 - AluJo SINE Alu -19 293 84 1963 152 3 10 chr12 133147035 133147398 -11135091 - AluSx SINE Alu 0 312 1 2037 121 19 25 chr12 133147548 133147863 -11134626 - AluSq SINE Alu 0 313 1 2208 97 7 3 chr12 133148203 133148492 -11133997 + AluSg SINE Alu 1 290 -20 1581 188 17 10 chr12 133149251 133149544 -11132945 - AluJo SINE Alu -17 295 1 295 223 107 41 chr12 133149552 133149673 -11132816 - L1ME4a LINE L1 -25 6096 5968 1950 112 7 7 chr12 133149783 133150059 -11132430 - AluSc SINE Alu -33 276 1 1009 110 7 0 chr12 133150187 133150323 -11132166 + AluSq/x SINE Alu 1 137 -175 2124 128 0 10 chr12 133150619 133150932 -11131557 - AluSg SINE Alu 0 310 1 2375 82 3 0 chr12 133151127 133151419 -11131070 - AluSp SINE Alu -15 298 6 1469 155 4 32 chr12 133151995 133152247 -11130242 + AluSx SINE Alu 1 245 -67 764 101 50 184 chr12 133152247 133152426 -11130063 + AluSq SINE Alu 135 289 -24 1939 139 3 16 chr12 133152690 133152999 -11129490 - AluSq SINE Alu -3 310 6 24 32 0 0 chr12 133153126 133153157 -11129332 + AT_rich Low_complexity Low_complexity 1 31 0 617 221 13 65 chr12 133153480 133153634 -11128855 - FRAM SINE Alu -30 146 1 1042 82 0 15 chr12 133153863 133153997 -11128492 - AluSq/x SINE Alu -180 132 1 2039 113 3 33 chr12 133154023 133154325 -11128164 + AluSx SINE Alu 13 305 -7 1994 142 10 10 chr12 133155451 133155753 -11126736 - AluSx SINE Alu -10 302 1 1228 183 119 15 chr12 133156031 133156299 -11126190 - AluJo SINE Alu -16 296 1 618 197 128 37 chr12 133156649 133156837 -11125652 - AluSx SINE Alu -106 206 2 311 143 36 0 chr12 133156901 133156957 -11125532 + Tigger2 DNA MER2_type 1 58 -2660 1605 120 30 0 chr12 133156957 133157190 -11125299 - AluSq SINE Alu 0 313 74 891 65 0 0 chr12 133157191 133157299 -11125190 - AluSg SINE Alu -202 108 1 754 83 0 37 chr12 133157322 133157431 -11125058 + AluSg/x SINE Alu 199 303 -7 727 194 0 8 chr12 133157438 133157572 -11124917 + AluJo SINE Alu 1 133 -169 2371 91 0 0 chr12 133157837 133158133 -11124356 - AluSg SINE Alu -14 296 1 246 171 12 65 chr12 133158386 133158556 -11123933 + C-rich Low_complexity Low_complexity 3 163 0 29 70 0 0 chr12 133208722 133208779 -11073710 + AT_rich Low_complexity Low_complexity 1 57 0 452 309 124 6 chr12 133208793 133208971 -11073518 + MIR SINE MIR 46 244 -18 420 273 28 60 chr12 133209011 133209227 -11073262 - L1ME LINE L1 -413 5708 5500 2013 104 3 17 chr12 133209590 133209888 -11072601 - AluSx SINE Alu -18 294 1 975 160 0 17 chr12 133209948 133210123 -11072366 + AluJo SINE Alu 137 308 -4 408 301 23 8 chr12 133210198 133210331 -11072158 + L2 LINE L2 2645 2779 -535 206 309 9 64 chr12 133210520 133210630 -11071859 + L2 LINE L2 2781 2884 -430 2148 93 0 0 chr12 133210761 133211050 -11071439 + AluSx SINE Alu 1 289 -23 237 220 60 80 chr12 133211050 133211150 -11071339 + Charlie7 DNA MER1_type 2515 2612 0 251 294 78 10 chr12 133211680 133211782 -11070707 - L2 LINE L2 0 3313 3205 1116 135 11 0 chr12 133211800 133211978 -11070511 - AluSq SINE Alu 0 313 134 2175 111 0 3 chr12 133211979 133212286 -11070203 - AluSx SINE Alu -6 306 1 322 188 0 0 chr12 133212346 133212410 -11070079 - L1MB8 LINE L1 -6 6172 6109 249 167 0 0 chr12 133212410 133212446 -11070043 + Alu SINE Alu 2 37 -266 2141 84 7 10 chr12 133212446 133212754 -11069735 - AluSx SINE Alu -5 307 1 809 213 13 0 chr12 133212755 133212905 -11069584 + AluJb SINE Alu 147 298 -14 1818 170 58 11 chr12 133212910 133213274 -11069215 - L1MB7 LINE L1 -66 6118 5738 2489 209 114 58 chr12 133213286 133213637 -11068852 - MER21B LTR ERV1 -11 852 522 1757 149 13 10 chr12 133213637 133213938 -11068551 + AluJb SINE Alu 1 302 -10 2489 209 114 58 chr12 133213938 133214376 -11068113 - MER21B LTR ERV1 -341 522 19 345 195 69 69 chr12 133214405 133214492 -11067997 - MER21B LTR ERV1 -776 87 1 4004 123 72 59 chr12 133214655 133215248 -11067241 - LTR1 LTR ERV1 0 785 177 2314 38 0 21 chr12 133215248 133215559 -11066930 - AluY SINE Alu 0 305 1 4004 123 72 59 chr12 133215559 133215739 -11066750 - LTR1 LTR ERV1 -608 177 1 4996 81 35 23 chr12 133215778 133216277 -11066212 + L1MA3 LINE L1 5553 6065 -240 2203 94 0 3 chr12 133216277 133216598 -11065891 + AluSq SINE Alu 1 313 0 4996 81 35 23 chr12 133216598 133216842 -11065647 + L1MA3 LINE L1 6065 6305 0 2167 101 7 0 chr12 133216858 133217156 -11065333 + AluSx SINE Alu 6 305 -7 2031 113 26 3 chr12 133217995 133218297 -11064192 - AluSx SINE Alu -3 309 1 658 170 96 159 chr12 133218298 133218651 -11063838 - MLT1C LTR MaLR -52 338 8 756 179 0 0 chr12 133218766 133218883 -11063606 + AluJb SINE Alu 2 118 -194 217 188 21 0 chr12 133218883 133218931 -11063558 + (TAA)n Simple_repeat Simple_repeat 3 51 0 280 265 15 0 chr12 133218975 133219043 -11063446 - L1ME3A LINE L1 -67 6103 6035 1679 137 10 14 chr12 133219099 133219392 -11063097 + AluSx SINE Alu 1 292 -20 1851 185 34 3 chr12 133219393 133219745 -11062744 - L1MB3 LINE L1 -9 6174 5812 1609 183 30 7 chr12 133219745 133220046 -11062443 - AluJb SINE Alu -4 308 1 2316 93 3 0 chr12 133220065 133220377 -11062112 - AluSp SINE Alu 0 313 1 597 134 179 18 chr12 133220556 133220668 -11061821 - FLAM_C SINE Alu -3 130 1 1552 74 0 61 chr12 133220798 133221027 -11061462 - AluSg/x SINE Alu -18 294 80 1976 89 58 20 chr12 133221141 133221434 -11061055 - AluY SINE Alu -7 304 1 1884 122 0 20 chr12 133221638 133221933 -11060556 - AluSx SINE Alu -10 302 14 1047 117 0 0 chr12 133221939 133222084 -11060405 - AluSq/x SINE Alu -167 145 1 1134 251 23 20 chr12 133222084 133222383 -11060106 - AluJb SINE Alu -1 301 2 2526 37 0 0 chr12 133222786 133223086 -11059403 - AluY SINE Alu -11 300 1 2036 96 0 38 chr12 133223095 133223408 -11059081 - AluSx SINE Alu -10 302 2 1687 149 48 10 chr12 133223479 133223768 -11058721 - AluJb SINE Alu -12 300 1 251 110 82 0 chr12 133224098 133224171 -11058318 + T-rich Low_complexity Low_complexity 5 83 0 1998 95 3 14 chr12 133224413 133224721 -11057768 - AluY SINE Alu 0 305 1 1076 150 38 58 chr12 133225494 133225586 -11056903 + MER33 DNA MER1_type 1 83 -2502 1896 154 0 0 chr12 133225586 133225878 -11056611 - AluJb SINE Alu -20 292 1 1076 150 38 58 chr12 133225878 133226028 -11056461 + MER33 DNA MER1_type 83 229 -95 347 167 15 0 chr12 133226714 133226780 -11055709 + MER33 DNA MER1_type 257 323 -1 307 167 17 17 chr12 133226807 133226867 -11055622 - MER58B DNA MER1_type -14 327 268 1807 152 163 14 chr12 133226869 133227237 -11055252 - MSTA LTR MaLR -5 423 1 677 262 41 23 chr12 133227237 133227450 -11055039 - MER58B DNA MER1_type -68 273 57 278 258 15 0 chr12 133227482 133227548 -11054941 + MER5A DNA MER1_type 9 75 -114 437 104 60 0 chr12 133227585 133227652 -11054837 + FAM SINE Alu 104 174 -5 185 194 265 61 chr12 133227653 133227751 -11054738 + MER5A DNA MER1_type 66 183 -6 * 487 202 26 18 chr12 133227729 133227843 -11054646 - MER5B DNA MER1_type -30 148 34 2027 137 0 10 chr12 133227843 133228156 -11054333 + AluSq SINE Alu 1 310 -3 288 0 0 0 chr12 133228157 133228189 -11054300 + (CA)n Simple_repeat Simple_repeat 2 33 0 1259 160 0 5 chr12 133228219 133228425 -11054064 + AluJb SINE Alu 84 288 -24 37 0 0 0 chr12 133228426 133228463 -11054026 + AT_rich Low_complexity Low_complexity 1 37 0 276 333 0 0 chr12 133228635 133228707 -11053782 + L2 LINE L2 3242 3313 0 2010 104 0 0 chr12 133228738 133229051 -11053438 - AluSg SINE Alu 0 313 1 867 228 126 64 chr12 133229392 133229765 -11052724 - MLT1C LTR MaLR -71 396 1 1688 122 36 53 chr12 133229769 133230072 -11052417 - AluJo SINE Alu -14 298 1 1781 125 10 28 chr12 133230082 133230394 -11052095 - AluSx SINE Alu 0 307 1 1788 184 0 0 chr12 133230696 133231006 -11051483 + AluSx SINE Alu 3 312 0 1049 242 64 33 chr12 133231009 133231152 -11051337 + L1MC5 LINE L1 7440 7577 -384 2170 112 0 3 chr12 133231152 133231448 -11051041 + AluSc SINE Alu 1 295 -14 1049 242 64 33 chr12 133231448 133231754 -11050735 + L1MC5 LINE L1 7577 7903 -58 2107 119 0 3 chr12 133231772 133232075 -11050414 + AluSx SINE Alu 1 302 -10 1925 128 3 0 chr12 133232083 133232371 -11050118 + AluSx SINE Alu 1 289 -23 633 239 0 0 chr12 133232386 133232503 -11049986 + FLAM_A SINE Alu 5 121 -12 634 203 68 0 chr12 133232520 133232638 -11049851 + FLAM_C SINE Alu 5 130 -3 32 26 0 0 chr12 133232638 133232677 -11049812 + AT_rich Low_complexity Low_complexity 1 39 0 1817 132 7 30 chr12 133232694 133232998 -11049491 - AluSq SINE Alu -16 297 1 1755 136 0 7 chr12 133233193 133233465 -11049024 - AluSg SINE Alu -40 270 1 489 321 36 61 chr12 133233465 133233561 -11048928 - MIR SINE MIR -49 213 123 1481 194 0 7 chr12 133233561 133233845 -11048644 + AluJo SINE Alu 1 282 -30 489 321 36 61 chr12 133233845 133233944 -11048545 - MIR SINE MIR -139 123 23 307 291 10 10 chr12 133234489 133234592 -11047897 + LTR33A LTR ERVL 405 507 -16 381 191 17 52 chr12 133235473 133235588 -11046901 + L1ME4a LINE L1 5946 6056 -65 1041 126 6 18 chr12 133235601 133235803 -11046686 - AluSq SINE Alu 0 313 133 2200 89 7 0 chr12 133235806 133236097 -11046392 - AluSx SINE Alu -19 293 1 22 35 0 0 chr12 133236135 133236164 -11046325 + AT_rich Low_complexity Low_complexity 1 29 0 256 250 0 18 chr12 133236331 133236387 -11046102 - MIR SINE MIR -133 75 21 1558 202 3 0 chr12 133236652 133236958 -11045531 + AluJb SINE Alu 1 307 0 1000 129 12 6 chr12 133236965 133237128 -11045361 - MER65C LTR ERV1 -2 459 296 2354 81 0 3 chr12 133237128 133237435 -11045054 - AluSq SINE Alu -7 306 1 620 165 35 9 chr12 133237435 133237550 -11044939 - MER65C LTR ERV1 -343 118 1 548 219 45 26 chr12 133237554 133237709 -11044780 + L1MA10 LINE L1 6175 6332 -2 1942 122 3 0 chr12 133238258 133238544 -11043945 - AluSp SINE Alu -17 296 10 1077 151 15 39 chr12 133238711 133238917 -11043572 + AluSq SINE Alu 101 301 -12 594 174 55 9 chr12 133238917 133239026 -11043463 - L1MD2 LINE L1 -504 5855 5742 1426 144 0 4 chr12 133239097 133239355 -11043134 + AluJb SINE Alu 58 312 0 269 229 147 20 chr12 133239623 133239744 -11042745 - L1ME LINE L1 -322 5844 5712 1058 110 26 0 chr12 133239767 133239922 -11042567 - AluSg/x SINE Alu -20 292 134 2134 100 0 37 chr12 133239922 133240243 -11042246 - AluSq SINE Alu -4 309 1 276 53 0 0 chr12 133240350 133240388 -11042101 + (CA)n Simple_repeat Simple_repeat 1 38 0 1009 94 0 0 chr12 133240467 133240605 -11041884 + FLAM_C SINE Alu 1 138 -5 2416 56 0 10 chr12 133240608 133240913 -11041576 + AluY SINE Alu 1 302 -9 437 155 0 14 chr12 133241053 133241124 -11041365 - AluS SINE Alu -242 70 1 220 282 9 91 chr12 133241623 133241733 -11040756 - L2 LINE L2 -64 3249 3149 1641 130 88 0 chr12 133242156 133242441 -11040048 + AluSx SINE Alu 1 310 -2 2091 127 0 0 chr12 133243604 133243904 -11038585 - AluSx SINE Alu -12 300 1 413 204 19 48 chr12 133244154 133244257 -11038232 + AluJo SINE Alu 85 184 -128 * 459 71 0 119 chr12 133244254 133244338 -11038151 + AluSg/x SINE Alu 108 181 -129 1432 110 5 0 chr12 133244362 133244571 -11037918 + AluY SINE Alu 102 311 0 419 114 0 73 chr12 133244577 133244727 -11037762 + AluSp SINE Alu 2 183 -130 1381 105 0 0 chr12 133244751 133244952 -11037537 + AluSg/x SINE Alu 104 304 0 1687 108 0 0 chr12 133245345 133245568 -11036921 + AluSx SINE Alu 1 223 -89 229 209 0 0 chr12 133245568 133245601 -11036888 + Alu SINE Alu 250 285 -14 620 145 26 8 chr12 133245632 133245749 -11036740 + L1MB7 LINE L1 6050 6168 -16 873 108 0 50 chr12 133246093 133246232 -11036257 + FLAM_C SINE Alu 1 132 -1 312 268 53 70 chr12 133246246 133246339 -11036150 + L1MC4a LINE L1 5740 5833 -288 3154 153 58 0 chr12 133246339 133246894 -11035595 + L1MB7 LINE L1 5589 6175 -9 312 268 53 70 chr12 133246894 133247028 -11035461 + L1MC4a LINE L1 5833 5965 -156 2318 70 3 0 chr12 133247056 133247355 -11035134 + AluY SINE Alu 1 300 -11 832 229 0 36 chr12 133247800 133247992 -11034497 - AluJo SINE Alu -5 307 123 21 0 0 0 chr12 133248062 133248083 -11034406 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 133248151 133248172 -11034317 + AT_rich Low_complexity Low_complexity 1 21 0 2189 102 0 0 chr12 133248724 133249019 -11033470 - AluSx SINE Alu -17 295 1 333 264 58 97 chr12 133249267 133249422 -11033067 + HsTC2 DNA Tc2 1 149 -1749 265 360 86 0 chr12 133249511 133249778 -11032711 + HsTC2 DNA Tc2 1403 1692 -206 824 216 22 27 chr12 133249803 133249886 -11032603 - AluJo SINE Alu -92 220 138 1160 115 42 5 chr12 133249886 133250078 -11032411 - L1MA8 LINE L1 -3 6288 6090 824 216 22 27 chr12 133250078 133250179 -11032310 - AluJo SINE Alu -174 138 37 3210 127 13 45 chr12 133250195 133250562 -11031927 - L1MA8 LINE L1 -194 6097 5752 1823 127 55 7 chr12 133250562 133250854 -11031635 - AluSx SINE Alu -6 306 1 3210 127 13 45 chr12 133250854 133251037 -11031452 - L1MA8 LINE L1 -539 5752 5565 311 148 0 19 chr12 133251159 133251213 -11031276 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 705 106 0 0 chr12 133251219 133251323 -11031166 + (TTCC)n Simple_repeat Simple_repeat 2 105 0 2005 106 41 3 chr12 133251804 133252097 -11030392 + AluSq SINE Alu 1 304 -9 989 184 86 21 chr12 133252966 133253199 -11029290 + Charlie1a DNA MER1_type 1 248 -1207 2401 67 0 3 chr12 133253219 133253518 -11028971 + AluSq SINE Alu 3 300 -13 1570 155 13 48 chr12 133253779 133253919 -11028570 + L1MB7 LINE L1 5725 5868 -316 1714 121 50 30 chr12 133253919 133254216 -11028273 - AluSc SINE Alu -6 303 1 1570 155 13 48 chr12 133254216 133254384 -11028105 + L1MB7 LINE L1 5868 6022 -162 1694 157 31 0 chr12 133254392 133254686 -11027803 - AluSx SINE Alu -9 303 1 2211 89 3 13 chr12 133254715 133255017 -11027472 - AluSx SINE Alu -13 299 1 668 224 52 46 chr12 133255365 133255539 -11026950 + MIR SINE MIR 18 192 -70 1859 126 34 7 chr12 133255719 133256013 -11026476 - AluSx SINE Alu -10 302 1 1607 158 28 0 chr12 133256261 133256582 -11025907 + AluSx SINE Alu 1 312 0 628 119 0 0 chr12 133256589 133256673 -11025816 + FLAM_A SINE Alu 31 114 -28 784 183 23 0 chr12 133256848 133256979 -11025510 - AluJo SINE Alu -177 135 2 991 262 172 0 chr12 133256982 133257325 -11025164 - L1MC/D LINE L1 -2045 5763 5362 548 202 118 0 chr12 133257325 133257444 -11025045 + FLAM_C SINE Alu 1 133 0 1857 125 35 3 chr12 133257614 133257903 -11024586 + AluSg SINE Alu 1 298 -12 1661 178 10 3 chr12 133257956 133258254 -11024235 - AluJb SINE Alu -12 300 1 29 60 0 0 chr12 133258321 133258371 -11024118 + AT_rich Low_complexity Low_complexity 1 50 0 906 125 0 0 chr12 133258441 133258577 -11023912 + FLAM_C SINE Alu 3 138 -5 397 275 131 74 chr12 133258604 133258848 -11023641 + L1MC/D LINE L1 5287 5544 -2264 226 291 0 0 chr12 133258879 133258934 -11023555 + L1MC/D LINE L1 5610 5664 -2144 1169 144 5 25 chr12 133259091 133259292 -11023197 + AluJo SINE Alu 3 199 -113 376 155 0 32 chr12 133259311 133259387 -11023102 - Alu SINE Alu -256 52 3 25 0 0 0 chr12 133259508 133259533 -11022956 + AT_rich Low_complexity Low_complexity 1 25 0 1879 143 3 0 chr12 133259584 133259871 -11022618 + AluSx SINE Alu 1 288 -24 21 67 0 0 chr12 133260155 133260185 -11022304 + AT_rich Low_complexity Low_complexity 1 30 0 892 271 13 10 chr12 133260315 133260650 -11021839 + AluYa5 SINE Alu 5 340 0 1846 128 11 3 chr12 133260952 133261258 -11021231 + AluSx SINE Alu 1 308 0 675 175 0 98 chr12 133261269 133261412 -11021077 + FLAM_A SINE Alu 4 132 -1 1635 189 7 0 chr12 133261907 133262204 -11020285 - AluJb SINE Alu -3 309 11 955 152 0 0 chr12 133262792 133262950 -11019539 + AluSq SINE Alu 138 295 -18 1592 171 46 86 chr12 133263168 133263370 -11019119 + L1MB5 LINE L1 5526 5735 -439 1890 181 85 16 chr12 133263370 133263757 -11018732 + MLT2D LTR ERVL 1 414 0 1592 171 46 86 chr12 133263757 133263947 -11018542 + L1MB5 LINE L1 5735 5931 -243 2076 119 0 3 chr12 133263947 133264242 -11018247 + AluSq SINE Alu 1 294 -19 1592 171 46 86 chr12 133264242 133264553 -11017936 + L1MB5 LINE L1 5931 6174 0 692 286 94 0 chr12 133264596 133264809 -11017680 + MIR SINE MIR 30 262 0 2327 65 0 0 chr12 133264809 133265123 -11017366 - AluY SINE Alu 0 314 1 1088 252 28 43 chr12 133265775 133266097 -11016392 + MLT1K LTR MaLR 11 327 -261 2607 32 0 0 chr12 133266180 133266488 -11016001 + AluY SINE Alu 1 308 -3 370 236 38 9 chr12 133266496 133266602 -11015887 - L1MC4 LINE L1 -7 8035 7927 1622 131 37 44 chr12 133266750 133266872 -11015617 + AluSx SINE Alu 14 135 -177 2158 91 3 3 chr12 133266872 133267169 -11015320 + AluSq SINE Alu 1 297 -16 1622 131 37 44 chr12 133267169 133267344 -11015145 + AluSx SINE Alu 135 309 -3 1869 131 10 25 chr12 133267346 133267660 -11014829 + AluSq SINE Alu 1 309 -4 2648 177 57 15 chr12 133267660 133268185 -11014304 - L1MB5 LINE L1 -50 6124 5578 553 269 25 12 chr12 133268195 133268355 -11014134 - MLT1L LTR MaLR -326 289 128 1640 182 3 22 chr12 133268692 133269005 -11013484 + AluJb SINE Alu 6 312 0 1871 98 28 57 chr12 133269099 133269417 -11013072 + AluSx SINE Alu 1 309 -3 2220 77 7 3 chr12 133269420 133269717 -11012772 + AluSq SINE Alu 1 298 -15 2117 122 0 0 chr12 133269907 133270202 -11012287 + AluSx SINE Alu 1 295 -17 2265 84 3 10 chr12 133270387 133270562 -11011927 - AluSp SINE Alu -5 308 134 1821 49 4 0 chr12 133270562 133270788 -11011701 - AluY SINE Alu -2 309 83 2265 84 3 10 chr12 133270788 133270922 -11011567 - AluSp SINE Alu -179 134 1 350 115 0 0 chr12 133271440 133271492 -11010997 - MLT1D LTR MaLR -5 500 449 1608 118 14 18 chr12 133271501 133271780 -11010709 + AluSq SINE Alu 1 278 -35 663 178 0 0 chr12 133271967 133272074 -11010415 + AluSp/q SINE Alu 197 303 -10 594 174 55 9 chr12 133272074 133272183 -11010306 - L1MD2 LINE L1 -504 5855 5742 1426 144 0 4 chr12 133272254 133272512 -11009977 + AluJb SINE Alu 58 312 0 274 290 125 7 chr12 133272700 133272898 -11009591 - L1ME LINE L1 -233 5929 5711 180 0 0 0 chr12 133272904 133272924 -11009565 + (TC)n Simple_repeat Simple_repeat 1 20 0 1959 103 21 14 chr12 133272924 133273215 -11009274 - AluSq SINE Alu -20 293 1 859 241 64 30 chr12 133273563 133273799 -11008690 + MIR SINE MIR 18 261 -1 930 117 0 8 chr12 133273810 133273938 -11008551 + FLAM_C SINE Alu 2 128 -5 26 30 0 0 chr12 133273976 133274009 -11008480 + AT_rich Low_complexity Low_complexity 1 33 0 2024 126 0 13 chr12 133274137 133274454 -11008035 - AluSq SINE Alu 0 313 1 2055 92 0 7 chr12 133274945 133275251 -11007238 + AluSc SINE Alu 1 304 0 198 0 0 0 chr12 133275418 133275440 -11007049 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1470 164 0 51 chr12 133275443 133275659 -11006830 - AluJb SINE Alu -25 287 88 1631 204 0 0 chr12 133275659 133275958 -11006531 + AluJo SINE Alu 1 299 -13 1470 164 0 51 chr12 133275958 133276033 -11006456 - AluJb SINE Alu -224 88 11 256 243 0 57 chr12 133276531 133276568 -11005921 + AluJ/FLAM SINE Alu 1 34 -268 1981 128 17 0 chr12 133276568 133276864 -11005625 + AluSx SINE Alu 1 301 -11 256 243 0 57 chr12 133276864 133276896 -11005593 + AluJ/FLAM SINE Alu 34 66 -236 2157 77 40 0 chr12 133277291 133277588 -11004901 + AluY SINE Alu 2 310 -1 3548 136 25 97 chr12 133277960 133278128 -11004361 - LTR8 LTR ERV1 0 691 513 1749 158 21 0 chr12 133278128 133278407 -11004082 - AluJb SINE Alu -27 285 1 2086 125 3 0 chr12 133278414 133278717 -11003772 - AluSx SINE Alu -8 304 1 3548 136 25 97 chr12 133278717 133279284 -11003205 - LTR8 LTR ERV1 -184 507 1 2081 104 3 0 chr12 133279320 133279608 -11002881 - AluSc SINE Alu -18 291 3 1236 254 10 3 chr12 133279610 133279909 -11002580 - HUERS-P1 LTR ERV1 -18 6245 5945 888 160 0 0 chr12 133279920 133280051 -11002438 + FLAM_C SINE Alu 3 133 0 219 69 0 0 chr12 133280200 133280229 -11002260 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 271 218 36 0 chr12 133280229 133280284 -11002205 - MER66A LTR ERV1 -138 340 284 1124 164 64 87 chr12 133280284 133280582 -11001907 - HUERS-P1 LTR ERV1 -125 6206 5916 459 177 10 21 chr12 133280606 133280702 -11001787 - HUERS-P1 LTR ERV1 -437 4499 4405 439 192 0 0 chr12 133280728 133280801 -11001688 - HUERS-P1 LTR ERV1 -3178 4942 4870 573 117 0 0 chr12 133280817 133280894 -11001595 - FRAM SINE Alu -23 153 77 1585 120 47 0 chr12 133280894 133281152 -11001337 - HUERS-P1 LTR ERV1 -655 5676 5407 1336 116 45 5 chr12 133281152 133281351 -11001138 + AluJo SINE Alu 1 207 -105 23 0 0 0 chr12 133281376 133281399 -11001090 + AT_rich Low_complexity Low_complexity 1 23 0 1498 159 4 20 chr12 133281400 133281652 -11000837 - HUERS-P1 LTR ERV1 -1477 5728 5481 2120 112 0 3 chr12 133281652 133281947 -11000542 - AluSq SINE Alu -17 296 3 1112 108 15 87 chr12 133281947 133282142 -11000347 - HUERS-P1 LTR ERV1 -4952 1311 1131 541 184 142 107 chr12 133282132 133282365 -11000124 - HUERS-P1 LTR ERV1 -5466 797 557 * 1219 195 211 7 chr12 133282379 133282687 -10999802 - HUERS-P1 LTR ERV1 -5892 371 1 3085 143 46 86 chr12 133282687 133282749 -10999740 - LTR8 LTR ERV1 0 691 628 1815 149 36 0 chr12 133282749 133283050 -10999439 + AluSx SINE Alu 1 312 0 3085 143 46 86 chr12 133283050 133283707 -10998782 - LTR8 LTR ERV1 -63 628 1 273 29 0 0 chr12 133284081 133284115 -10998374 + (CA)n Simple_repeat Simple_repeat 1 34 0 687 133 14 21 chr12 133284165 133284308 -10998181 + CT-rich Low_complexity Low_complexity 1 142 0 2018 138 0 3 chr12 133284318 133284630 -10997859 - AluJo SINE Alu -1 311 1 1433 193 58 69 chr12 133284884 133285004 -10997485 + MLT1C LTR MaLR 52 172 -295 1897 130 3 0 chr12 133285004 133285288 -10997201 + AluSx SINE Alu 1 285 -27 363 44 0 0 chr12 133285296 133285341 -10997148 + (GAAAA)n Simple_repeat Simple_repeat 3 47 0 1433 193 58 69 chr12 133285341 133285590 -10996899 + MLT1C LTR MaLR 179 426 -41 750 301 104 14 chr12 133285624 133285979 -10996510 + L2 LINE L2 2921 3307 -6 2137 118 0 0 chr12 133285979 133286284 -10996205 + AluSx SINE Alu 1 305 -7 1791 147 0 16 chr12 133286829 133287143 -10995346 - AluSx SINE Alu -3 309 1 1608 141 11 32 chr12 133290273 133290550 -10991939 + MER57-int LTR ERV1 1750 2020 -5517 2316 96 0 3 chr12 133290559 133290852 -10991637 - AluSg SINE Alu -18 292 1 633 186 26 0 chr12 133290862 133290975 -10991514 - L1MC1 LINE L1 0 6333 6218 1967 130 40 3 chr12 133291218 133291517 -10990972 - AluSx SINE Alu -2 310 1 1022 107 20 7 chr12 133291759 133291909 -10990580 - AluY SINE Alu -74 237 86 310 228 69 10 chr12 133291953 133292054 -10990435 - MIR SINE MIR -92 170 64 2163 83 0 4 chr12 133292056 133292332 -10990157 + AluSg SINE Alu 1 275 -35 228 35 0 0 chr12 133292334 133292363 -10990126 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2305 94 7 10 chr12 133292363 133292672 -10989817 + AluSg SINE Alu 3 310 0 2611 65 0 0 chr12 133292711 133293017 -10989472 + AluSx SINE Alu 1 306 -6 468 162 181 118 chr12 133293019 133293078 -10989411 + Charlie1 DNA MER1_type 1578 1632 -1129 1076 203 88 45 chr12 133293078 133293408 -10989081 - MER2 DNA MER2_type 0 344 1 468 162 181 118 chr12 133293408 133293552 -10988937 + Charlie1 DNA MER1_type 1632 1794 -967 324 269 157 8 chr12 133295117 133295251 -10987238 - MER117 DNA MER1_type -36 161 8 385 322 26 0 chr12 133295867 133295982 -10986507 - L2 LINE L2 0 3313 3196 1471 176 0 4 chr12 133295990 133296234 -10986255 - AluJb SINE Alu -2 310 68 1272 159 7 74 chr12 133296357 133296627 -10985862 + AluJb SINE Alu 47 298 -14 688 241 42 0 chr12 133296816 133296982 -10985507 + L1MC4 LINE L1 7398 7570 -472 2542 232 53 42 chr12 133297012 133297376 -10985113 + L1MC4 LINE L1 7242 7600 -442 2032 142 0 0 chr12 133297376 133297671 -10984818 + AluSx SINE Alu 1 295 -17 2542 232 53 42 chr12 133297671 133298098 -10984391 + L1MC4 LINE L1 7600 8042 0 2076 119 34 0 chr12 133298222 133298515 -10983974 + AluSx SINE Alu 1 303 -9 1643 156 6 67 chr12 133298576 133298890 -10983599 + AluJo SINE Alu 4 298 -14 2263 106 3 0 chr12 133298892 133299193 -10983296 + AluSg SINE Alu 1 302 -8 253 261 14 0 chr12 133299469 133299538 -10982951 + (TA)n Simple_repeat Simple_repeat 1 70 0 226 78 20 59 chr12 133299539 133299590 -10982899 - L1MCa LINE L1 -4363 2063 2015 243 0 0 0 chr12 133300175 133300202 -10982287 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 282 245 226 59 chr12 133300446 133300650 -10981839 - L1MC4a LINE L1 -1892 5916 5679 2502 71 0 0 chr12 133300697 133300991 -10981498 + AluSc SINE Alu 1 294 -15 34 89 0 0 chr12 133302329 133302419 -10980070 + AT_rich Low_complexity Low_complexity 1 90 0 2640 51 0 10 chr12 133303141 133303455 -10979034 + AluY SINE Alu 1 311 0 2080 124 0 0 chr12 133303574 133303857 -10978632 + AluSx SINE Alu 15 297 -15 2168 142 3 0 chr12 133304127 133304436 -10978053 + AluSx SINE Alu 1 310 -2 1198 171 22 31 chr12 133304488 133304710 -10977779 - AluJo SINE Alu -11 301 82 1915 146 35 0 chr12 133304875 133305162 -10977327 + AluSq SINE Alu 1 297 -16 702 137 8 8 chr12 133305281 133305398 -10977091 + FLAM_A SINE Alu 21 137 -5 21 57 0 0 chr12 133305428 133305463 -10977026 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr12 133305503 133305535 -10976954 + AT_rich Low_complexity Low_complexity 1 32 0 1048 186 11 0 chr12 133305535 133305712 -10976777 + AluJb SINE Alu 120 298 -14 313 256 0 44 chr12 133305715 133305805 -10976684 + L1ME2 LINE L1 5742 5827 -294 2039 162 0 0 chr12 133305807 133306115 -10976374 + AluJb SINE Alu 3 310 -2 2182 112 23 10 chr12 133308010 133308314 -10974175 + AluSx SINE Alu 4 311 -1 318 306 37 37 chr12 133308437 133308608 -10973881 + MER5A DNA MER1_type 7 188 -1 1832 134 7 11 chr12 133309289 133309558 -10972931 + AluJb SINE Alu 13 280 -32 2322 94 3 7 chr12 133309620 133309928 -10972561 + AluSc SINE Alu 1 307 -2 3806 142 114 24 chr12 133309962 133311341 -10971148 - pTR5 LTR ERV1 0 2606 1524 26 64 0 0 chr12 133312667 133312714 -10969775 + AT_rich Low_complexity Low_complexity 1 47 0 400 209 81 90 chr12 133312882 133313093 -10969396 + L1MC4 LINE L1 7834 8042 0 2421 85 0 3 chr12 133313099 133313406 -10969083 + AluY SINE Alu 1 306 -5 1602 172 24 20 chr12 133313415 133313711 -10968778 + AluJo SINE Alu 3 299 -13 35 78 0 0 chr12 133313795 133313872 -10968617 + AT_rich Low_complexity Low_complexity 1 77 0 855 228 0 0 chr12 133313961 133314119 -10968370 + FRAM SINE Alu 4 161 -5 294 257 207 7 chr12 133314609 133314749 -10967740 + L1ME2 LINE L1 5988 6155 -9 988 147 20 0 chr12 133315888 133316038 -10966451 - FRAM SINE Alu -15 161 9 1836 181 0 0 chr12 133316062 133316365 -10966124 + AluJb SINE Alu 1 303 -9 1938 150 14 3 chr12 133316773 133317066 -10965423 + AluJb SINE Alu 1 296 -16 494 197 8 0 chr12 133317066 133317183 -10965306 + GA-rich Low_complexity Low_complexity 1 118 0 202 344 16 16 chr12 133317294 133317416 -10965073 - L2 LINE L2 -423 2891 2770 698 197 0 133 chr12 133317426 133317675 -10964814 - MER102b DNA MER1_type -1 340 125 344 351 58 10 chr12 133317775 133317983 -10964506 - L2 LINE L2 -559 2755 2538 2202 115 0 7 chr12 133318071 133318367 -10964122 - AluSx SINE Alu -18 294 1 2403 70 0 13 chr12 133318388 133318727 -10963762 - AluY SINE Alu 0 311 1 2341 95 0 0 chr12 133321300 133321605 -10960884 - AluSx SINE Alu -7 305 1 2145 107 17 0 chr12 133322527 133322817 -10959672 + AluSp SINE Alu 1 295 -18 273 307 0 40 chr12 133322893 133322994 -10959495 + MIR SINE MIR 1 97 -165 1755 151 0 40 chr12 133323001 133323299 -10959190 - AluJo SINE Alu -26 286 1 282 123 0 0 chr12 133323303 133323360 -10959129 + (TA)n Simple_repeat Simple_repeat 1 57 0 2322 87 3 3 chr12 133323360 133323658 -10958831 - AluY SINE Alu -13 298 1 265 255 51 10 chr12 133323672 133323770 -10958719 + MIR SINE MIR 100 201 -61 471 150 12 0 chr12 133323788 133323868 -10958621 + L2 LINE L2 3190 3270 -2 246 213 66 0 chr12 133323858 133323919 -10958570 + MIR SINE MIR 182 246 -16 * 1628 148 4 8 chr12 133324559 133324815 -10957674 - AluJb SINE Alu -10 302 48 422 192 0 0 chr12 133325211 133325284 -10957205 - MER45 DNA AcHobo 0 1581 1509 2169 82 3 10 chr12 133325285 133325578 -10956911 + AluY SINE Alu 1 291 -20 1455 140 21 12 chr12 133326157 133326431 -10956058 + AluSx SINE Alu 45 320 0 575 138 0 0 chr12 133326560 133326654 -10955835 + L1PB4 LINE L1 6062 6155 -1 1209 195 99 20 chr12 133326748 133326842 -10955647 - L1ME3A LINE L1 -21 6149 6064 2226 96 3 0 chr12 133326842 133327174 -10955315 + AluSx SINE Alu 1 333 0 1209 195 99 20 chr12 133327174 133327380 -10955109 - L1ME3A LINE L1 -106 6064 5824 1749 162 20 34 chr12 133327885 133328181 -10954308 + AluJb SINE Alu 3 294 -18 2000 149 3 7 chr12 133329083 133329384 -10953105 - AluJb SINE Alu -12 300 1 2270 108 0 0 chr12 133329386 133329681 -10952808 - AluSx SINE Alu -17 295 1 1994 114 61 0 chr12 133329917 133330197 -10952292 - AluY SINE Alu -14 297 1 950 109 62 57 chr12 133330595 133330788 -10951701 - L1PA16 LINE L1 0 6166 5973 1740 182 3 3 chr12 133330806 133331092 -10951397 - AluJb SINE Alu -26 286 1 259 191 0 0 chr12 133331123 133331170 -10951319 - Charlie1 DNA MER1_type 0 2761 2715 1201 197 62 0 chr12 133331170 133331429 -10951060 + L1MB4 LINE L1 5906 6180 0 1992 159 0 0 chr12 133331438 133331728 -10950761 + AluSx SINE Alu 7 296 -16 2385 83 3 3 chr12 133331728 133332028 -10950461 + AluSp SINE Alu 1 300 -13 452 167 0 0 chr12 133332048 133332126 -10950363 + L1MB8 LINE L1 6101 6178 0 1905 135 3 10 chr12 133332183 133332479 -10950010 - AluSc SINE Alu -15 294 1 2814 3 0 0 chr12 133333991 133334286 -10948203 + AluYa5 SINE Alu 1 295 -16 248 158 0 0 chr12 133334361 133334399 -10948090 - MER3 DNA MER1_type -163 46 9 234 306 218 12 chr12 133334526 133334696 -10947793 - L2 LINE L2 -493 2821 2617 1526 164 14 27 chr12 133335392 133335684 -10946805 + AluJo SINE Alu 11 298 -14 2493 56 0 0 chr12 133335684 133335997 -10946492 + AluSp SINE Alu 1 314 0 1266 189 64 4 chr12 133336126 133336359 -10946130 + Tigger7 DNA MER2_type 4 250 -2237 483 227 10 0 chr12 133336369 133336466 -10946023 + Tigger7 DNA MER2_type 2490 2587 0 1925 160 0 0 chr12 133336586 133336874 -10945615 - AluSx SINE Alu -24 288 1 916 112 0 15 chr12 133336895 133337029 -10945460 - FLAM_C SINE Alu -1 132 1 2391 161 73 35 chr12 133337030 133337342 -10945147 - L1MB3 LINE L1 -356 5827 5529 192 40 0 0 chr12 133337342 133337367 -10945122 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2214 91 7 3 chr12 133337369 133337656 -10944833 - AluY SINE Alu -23 288 1 2391 161 73 35 chr12 133337656 133337832 -10944657 - L1MB3 LINE L1 -654 5529 5317 1252 150 0 0 chr12 133337843 133338036 -10944453 - AluSg/x SINE Alu 0 312 120 2307 122 0 0 chr12 133338037 133338348 -10944141 - AluY SINE Alu 0 311 1 1299 156 16 74 chr12 133338349 133338481 -10944008 - L1MB3 LINE L1 -823 5323 5185 2520 112 31 14 chr12 133338481 133338839 -10943650 - THE1B LTR MaLR 0 364 1 1817 166 13 0 chr12 133338849 133339157 -10943332 - AluSx SINE Alu 0 312 1 1299 156 16 74 chr12 133339157 133339378 -10943111 - L1MB3 LINE L1 -970 5176 4980 2000 121 3 3 chr12 133339381 133339678 -10942811 - AluSg SINE Alu -13 297 1 1918 131 7 3 chr12 133339680 133339971 -10942518 - AluSx SINE Alu -20 292 1 621 168 44 0 chr12 133339972 133340085 -10942404 - L1M3 LINE L1 -570 5613 5496 679 172 82 0 chr12 133340085 133340207 -10942282 - FRAM SINE Alu -19 157 26 1942 138 0 22 chr12 133340329 133340648 -10941841 + AluSx SINE Alu 1 312 0 1710 155 3 3 chr12 133340761 133341051 -10941438 - AluSx SINE Alu -20 292 3 22 0 0 0 chr12 133341118 133341140 -10941349 + AT_rich Low_complexity Low_complexity 1 22 0 462 251 46 80 chr12 133341362 133341537 -10940952 + MIR SINE MIR 93 261 -1 429 20 0 0 chr12 133341739 133341789 -10940700 + (TG)n Simple_repeat Simple_repeat 1 50 0 2227 88 3 0 chr12 133342027 133342321 -10940168 + AluSx SINE Alu 1 295 -17 645 140 0 0 chr12 133342475 133342568 -10939921 - FRAM SINE Alu -17 159 67 836 154 70 0 chr12 133343301 133343444 -10939045 - L1PA8 LINE L1 -3 6169 6017 674 187 0 0 chr12 133343577 133343684 -10938805 + AluSp SINE Alu 2 108 -205 394 115 0 0 chr12 133343687 133343748 -10938741 + Alu SINE Alu 240 300 -2 2081 93 0 30 chr12 133344173 133344475 -10938014 + AluSp SINE Alu 3 295 -18 1875 151 0 3 chr12 133345261 133345560 -10936929 - AluSx SINE Alu -14 298 1 413 256 128 0 chr12 133345824 133346004 -10936485 + AluJb SINE Alu 35 237 -65 500 148 91 0 chr12 133346711 133346799 -10935690 + MER4A LTR ERV1 1 96 -568 1707 137 8 80 chr12 133346800 133347172 -10935317 + MER4A LTR ERV1 261 664 0 916 102 0 0 chr12 133347757 133347885 -10934604 + AluSg/x SINE Alu 164 291 -21 1796 159 3 7 chr12 133347905 133348229 -10934260 + AluJb SINE Alu 1 312 0 2858 106 50 24 chr12 133348825 133349028 -10933461 - L1MA2 LINE L1 -10 6294 6098 1863 119 34 14 chr12 133349028 133349323 -10933166 - AluSx SINE Alu -9 303 3 2858 106 50 24 chr12 133349323 133349583 -10932906 - L1MA2 LINE L1 -206 6098 5819 1171 112 146 0 chr12 133350394 133350600 -10931889 - L1PA13 LINE L1 0 6163 5928 2110 110 3 0 chr12 133350706 133351007 -10931482 - AluSx SINE Alu -10 302 1 677 175 8 0 chr12 133351577 133351697 -10930792 - FLAM_A SINE Alu -2 140 20 1929 138 10 0 chr12 133351709 133352005 -10930484 - AluSx SINE Alu -13 299 1 1480 149 4 0 chr12 133352184 133352419 -10930070 - AluSx SINE Alu -76 236 1 705 173 26 6 chr12 133352419 133352575 -10929914 + L1MB8 LINE L1 6020 6178 0 467 182 50 0 chr12 133353245 133353343 -10929146 + L1MA7 LINE L1 5703 5811 -360 682 144 17 8 chr12 133353354 133353472 -10929017 + FLAM_A SINE Alu 23 141 -1 1256 168 62 111 chr12 133353473 133353625 -10928864 + L1MA7 LINE L1 5823 5981 -310 1724 102 91 0 chr12 133353625 133353900 -10928589 + AluSq SINE Alu 1 300 -13 1256 168 62 111 chr12 133353900 133354070 -10928419 + L1MA7 LINE L1 5981 6124 -167 1788 149 3 14 chr12 133354070 133354365 -10928124 + AluSx SINE Alu 1 292 -20 1256 168 62 111 chr12 133354365 133354447 -10928042 + L1MA7 LINE L1 6124 6208 -83 22 35 0 0 chr12 133354517 133354546 -10927943 + AT_rich Low_complexity Low_complexity 1 29 0 1938 98 4 0 chr12 133354756 133355021 -10927468 - AluSg SINE Alu -44 266 1 1546 166 19 39 chr12 133355021 133355328 -10927161 - AluJb SINE Alu -11 301 1 603 155 103 0 chr12 133355374 133355490 -10926999 - MER58A DNA MER1_type -9 215 88 376 191 302 0 chr12 133355498 133355624 -10926865 + MER96 DNA MER1_type? 12 175 0 371 141 78 0 chr12 133355678 133355742 -10926747 - MER58A DNA MER1_type -38 69 1 670 310 64 54 chr12 133355923 133355987 -10926502 - L1ME4a LINE L1 -224 5897 5835 2373 80 0 6 chr12 133355987 133356298 -10926191 - AluSc SINE Alu 0 309 1 670 310 64 54 chr12 133356298 133356858 -10925631 - L1ME4a LINE L1 -286 5835 5267 580 285 34 72 chr12 133356887 133357150 -10925339 + MIR SINE MIR 10 262 0 2793 3 0 0 chr12 133357309 133357618 -10924871 + AluYa5 SINE Alu 1 309 -2 201 191 21 0 chr12 133357703 133357750 -10924739 + CT-rich Low_complexity Low_complexity 5 52 0 1725 141 0 41 chr12 133357753 133358043 -10924446 - AluJb SINE Alu -34 278 1 2898 229 72 47 chr12 133358069 133358308 -10924181 - MER21B LTR ERV1 -2 861 629 2335 146 9 33 chr12 133358308 133358656 -10923833 - L1PA15 LINE L1 0 6165 5827 1697 143 12 47 chr12 133358656 133358977 -10923512 - AluJb SINE Alu -2 310 1 2335 146 9 33 chr12 133358977 133359047 -10923442 - L1PA15 LINE L1 -338 5827 5757 2898 229 72 47 chr12 133359047 133359379 -10923110 - MER21B LTR ERV1 -234 629 261 1838 138 21 3 chr12 133359379 133359668 -10922821 + AluJb SINE Alu 3 296 -16 2898 229 72 47 chr12 133359668 133359919 -10922570 - MER21B LTR ERV1 -602 261 18 420 227 13 0 chr12 133359936 133360011 -10922478 - MER21B LTR ERV1 -776 87 12 2264 107 3 0 chr12 133360302 133360610 -10921879 - AluSx SINE Alu -3 309 1 1884 135 3 14 chr12 133360749 133361045 -10921444 - AluJb SINE Alu -16 296 4 2138 120 0 0 chr12 133361103 133361403 -10921086 - AluSx SINE Alu -12 300 1 345 272 119 68 chr12 133361495 133361799 -10920690 - HAL1 LINE L1 -981 1526 1196 2290 50 40 7 chr12 133361799 133362100 -10920389 - AluY SINE Alu 0 311 1 345 272 119 68 chr12 133362100 133362189 -10920300 - HAL1 LINE L1 -1311 1196 1113 2167 99 26 0 chr12 133362290 133362592 -10919897 - AluSq SINE Alu -2 311 2 4363 105 182 70 chr12 133362871 133364268 -10918221 - pTR5 LTR ERV1 0 2438 741 3059 156 75 34 chr12 133364288 133364679 -10917810 + MER39B LTR ERV1 4 429 -224 2185 89 0 0 chr12 133364679 133364970 -10917519 - AluSx SINE Alu -21 291 1 3059 156 75 34 chr12 133364970 133365169 -10917320 + MER39B LTR ERV1 429 618 -35 1205 192 41 20 chr12 133365170 133365415 -10917074 + MER39B-int LTR ERV1 1 250 -6081 366 129 0 0 chr12 133365416 133365478 -10917011 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1673 136 16 45 chr12 133365478 133365786 -10916703 - AluSx SINE Alu -13 299 1 1623 151 23 33 chr12 133365795 133366100 -10916389 - AluJo SINE Alu -10 302 1 439 233 272 5 chr12 133366115 133366277 -10916212 - MLT1F1 LTR MaLR 0 650 408 602 174 74 0 chr12 133366399 133366520 -10915969 + L1MB8 LINE L1 6043 6172 -6 460 212 35 35 chr12 133366523 133366636 -10915853 - MER45 DNA AcHobo -925 115 3 865 237 38 59 chr12 133366639 133366766 -10915723 - MLT1F1 LTR MaLR -257 273 145 1875 138 0 20 chr12 133366766 133367063 -10915426 - AluJo SINE Alu -21 291 1 865 237 38 59 chr12 133367063 133367235 -10915254 - MLT1F1 LTR MaLR -385 145 1 2561 49 0 3 chr12 133367455 133367763 -10914726 - AluY SINE Alu -4 307 1 851 182 27 21 chr12 133367829 133368016 -10914473 + L1MB7 LINE L1 5953 6140 -44 1265 126 6 0 chr12 133368016 133368199 -10914290 + AluJo SINE Alu 1 184 -128 1031 157 0 0 chr12 133368222 133368375 -10914114 + FRAM SINE Alu 1 153 -13 319 167 0 0 chr12 133368388 133368442 -10914047 + U2 snRNA snRNA 1 54 -134 1458 198 50 44 chr12 133368445 133368808 -10913681 + MLT1A1 LTR MaLR 1 365 0 441 0 0 0 chr12 133369286 133369335 -10913154 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2035 119 3 0 chr12 133369338 133369623 -10912866 - AluSx SINE Alu -26 286 1 187 328 0 31 chr12 133369757 133369821 -10912668 - MIR SINE MIR -188 74 13 210 268 0 18 chr12 133369901 133369957 -10912532 - L2 LINE L2 -566 2748 2694 732 188 0 8 chr12 133369960 133370093 -10912396 + FLAM_C SINE Alu 2 133 0 622 122 0 0 chr12 133370230 133370312 -10912177 + AluS SINE Alu 2 83 -230 609 160 56 0 chr12 133370483 133370608 -10911881 + AluSg/x SINE Alu 158 289 -23 925 95 7 29 chr12 133370615 133370752 -10911737 + AluSc SINE Alu 1 134 -175 1956 93 38 14 chr12 133370753 133371043 -10911446 + AluSx SINE Alu 1 297 -15 26 0 0 0 chr12 133371075 133371101 -10911388 + AT_rich Low_complexity Low_complexity 1 26 0 843 169 0 40 chr12 133371108 133371256 -10911233 - FRAM SINE Alu -22 154 13 26 0 0 0 chr12 133371344 133371370 -10911119 + AT_rich Low_complexity Low_complexity 1 26 0 1446 176 28 41 chr12 133371382 133371672 -10910817 - AluJo SINE Alu -26 286 1 1972 142 9 0 chr12 133371994 133372310 -10910179 - MLT1B LTR MaLR -20 370 52 365 235 0 0 chr12 133372313 133372398 -10910091 - L1MD2 LINE L1 -396 5963 5879 314 75 0 0 chr12 133372399 133372439 -10910050 + AluJb SINE Alu 85 124 -178 584 78 0 0 chr12 133372440 133372517 -10909972 + AluJ/FRAM SINE Alu 229 305 -7 33 0 0 0 chr12 133372542 133372575 -10909914 + AT_rich Low_complexity Low_complexity 1 33 0 764 154 8 0 chr12 133372687 133372810 -10909679 + LTR49-int LTR ERV1 6083 6206 -125 310 182 36 0 chr12 133372810 133372865 -10909624 + MER66B LTR ERV1 292 348 -138 219 69 0 0 chr12 133372865 133372894 -10909595 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 864 169 0 0 chr12 133373041 133373171 -10909318 - FLAM_C SINE Alu 0 133 4 2063 100 10 19 chr12 133373173 133373482 -10909007 - AluSq SINE Alu -7 306 1 2135 99 3 3 chr12 133373482 133373785 -10908704 - AluSg SINE Alu -6 304 1 452 261 70 7 chr12 133373787 133373929 -10908560 + MIR SINE MIR 64 214 -48 1142 67 20 0 chr12 133373930 133374079 -10908410 + AluY SINE Alu 86 237 -74 208 184 20 0 chr12 133374153 133374202 -10908287 + (CAT)n Simple_repeat Simple_repeat 1 50 0 2135 109 3 0 chr12 133374332 133374634 -10907855 + AluSx SINE Alu 9 311 -1 572 212 26 0 chr12 133374885 133374998 -10907491 + L1MC1 LINE L1 6218 6333 0 2214 92 0 3 chr12 133375004 133375297 -10907192 + AluSg SINE Alu 1 292 -18 1665 137 7 32 chr12 133375306 133375584 -10906905 - MER57-int LTR ERV1 -5517 2020 1750 198 0 0 0 chr12 133376247 133376269 -10906220 + (T)n Simple_repeat Simple_repeat 1 22 0 1776 146 0 19 chr12 133378733 133379048 -10903441 + AluSx SINE Alu 1 309 -3 2156 118 0 0 chr12 133379593 133379898 -10902591 - AluSx SINE Alu -7 305 1 739 299 101 32 chr12 133379898 133380276 -10902213 - L2 LINE L2 -6 3307 2904 1453 198 68 52 chr12 133380287 133380535 -10901954 - MLT1C LTR MaLR -41 426 169 1903 144 3 6 chr12 133380535 133380847 -10901642 - AluSx SINE Alu -1 311 1 1453 198 68 52 chr12 133380847 133380967 -10901522 - MLT1C LTR MaLR -298 169 52 1746 156 0 3 chr12 133381221 133381678 -10900811 + AluJo SINE Alu 1 456 0 201 39 0 0 chr12 133381737 133381763 -10900726 + (TG)n Simple_repeat Simple_repeat 1 26 0 3032 144 47 91 chr12 133382138 133382795 -10899694 + LTR8 LTR ERV1 2 626 -65 1860 130 41 0 chr12 133382795 133383087 -10899402 - AluSx SINE Alu -8 304 1 3032 144 47 91 chr12 133383087 133383151 -10899338 + LTR8 LTR ERV1 626 691 0 1219 195 211 7 chr12 133383151 133383459 -10899030 + HUERS-P1 LTR ERV1 1 371 -5892 541 184 142 107 chr12 133383473 133383706 -10898783 + HUERS-P1 LTR ERV1 557 797 -5466 * 1112 108 15 87 chr12 133383696 133383891 -10898598 + HUERS-P1 LTR ERV1 1131 1311 -4952 2109 101 24 3 chr12 133383891 133384188 -10898301 + AluSq SINE Alu 3 305 -8 1472 148 19 23 chr12 133384194 133384206 -10898283 + MER31-int LTR ERV1 5473 5484 -1721 5939 22 0 4 chr12 133384206 133384885 -10897604 + SVA Other Other 711 1386 0 1472 148 19 23 chr12 133384885 133385129 -10897360 + MER31-int LTR ERV1 5484 5728 -1477 23 0 0 0 chr12 133385130 133385153 -10897336 + AT_rich Low_complexity Low_complexity 1 23 0 1350 111 45 5 chr12 133385179 133385377 -10897112 - AluJo SINE Alu -106 206 1 1675 122 27 0 chr12 133385377 133385640 -10896849 + MER31-int LTR ERV1 5407 5676 -655 573 117 0 0 chr12 133385640 133385717 -10896772 + FRAM SINE Alu 77 153 -23 389 205 13 13 chr12 133385726 133385804 -10896685 + MER31-int LTR ERV1 3465 4943 -1473 491 172 10 20 chr12 133385830 133385929 -10896560 + MER31-int LTR ERV1 4405 4502 -434 1204 159 69 54 chr12 133385950 133386227 -10896262 + MER31-int LTR ERV1 5916 6196 -135 660 178 0 0 chr12 133386341 133386459 -10896030 + AluSg/x SINE Alu 174 291 -21 600 209 23 8 chr12 133386466 133386595 -10895894 + FLAM_C SINE Alu 1 131 -2 1499 153 16 76 chr12 133386688 133386846 -10895643 - AluJo SINE Alu -17 295 164 1990 127 7 0 chr12 133386846 133387146 -10895343 - AluSq SINE Alu -11 302 1 1499 153 16 76 chr12 133387146 133387301 -10895188 - AluJo SINE Alu -148 164 1 2370 161 73 35 chr12 133387302 133387614 -10894875 - L1MB3 LINE L1 -356 5827 5529 192 40 0 0 chr12 133387614 133387639 -10894850 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2088 91 7 3 chr12 133387641 133387928 -10894561 - AluY SINE Alu -23 288 1 2370 161 73 35 chr12 133387928 133388104 -10894385 - L1MB3 LINE L1 -654 5529 5317 1185 150 0 0 chr12 133388115 133388308 -10894181 - AluSg/x SINE Alu 0 310 118 2179 122 0 0 chr12 133388309 133388620 -10893869 - AluY SINE Alu 0 311 1 1289 153 16 77 chr12 133388621 133388753 -10893736 - L1MB3 LINE L1 -823 5323 5185 2520 112 31 14 chr12 133388753 133389111 -10893378 - THE1B LTR MaLR 0 364 1 1289 153 16 77 chr12 133389111 133389122 -10893367 - L1MB3 LINE L1 -961 5185 5175 1918 156 13 0 chr12 133389122 133389430 -10893059 - AluSx SINE Alu 0 312 1 1289 153 16 77 chr12 133389430 133389651 -10892838 - L1MB3 LINE L1 -971 5175 4980 2204 93 0 3 chr12 133389654 133389954 -10892535 - AluSx SINE Alu -13 299 1 241 267 0 27 chr12 133389956 133390031 -10892458 + HsTC2 DNA Tc2 1826 1898 0 2126 81 3 3 chr12 133390314 133390639 -10891850 - AluSx SINE Alu 0 325 1 510 48 0 0 chr12 133390640 133390702 -10891787 - AluSq/x SINE Alu -176 136 75 1787 139 0 78 chr12 133390702 133391033 -10891456 - AluSx SINE Alu -5 307 3 1670 163 14 14 chr12 133391116 133391410 -10891079 + AluJo SINE Alu 1 294 -18 229 144 89 78 chr12 133391438 133391528 -10890961 - MER106A DNA MER1_type 0 236 146 1010 194 99 16 chr12 133391553 133391806 -10890683 - L1MB5 LINE L1 -23 6151 5878 203 188 21 0 chr12 133391824 133391872 -10890617 + CT-rich Low_complexity Low_complexity 1 49 0 1469 168 13 32 chr12 133391872 133392187 -10890302 - AluJo SINE Alu -3 309 1 2060 174 10 18 chr12 133392191 133392582 -10889907 - L1MB5 LINE L1 -291 5883 5496 812 199 20 0 chr12 133392602 133392787 -10889702 - AluJo/FRAM SINE Alu 0 321 134 1031 193 147 13 chr12 133392787 133393025 -10889464 - AluJb SINE Alu -2 310 41 1927 126 23 3 chr12 133393052 133393354 -10889135 - AluSx SINE Alu 0 312 5 689 140 0 0 chr12 133393371 133393471 -10889018 + AluS SINE Alu 2 101 -211 1608 141 11 32 chr12 133396640 133396917 -10885572 + MER57-int LTR ERV1 1750 2020 -5517 2128 106 0 3 chr12 133396926 133397219 -10885270 - AluSg SINE Alu -18 292 1 631 186 26 0 chr12 133397229 133397342 -10885147 - L1MC1 LINE L1 0 6333 6218 1863 127 40 3 chr12 133397585 133397884 -10884605 - AluSx SINE Alu -2 310 1 1116 67 20 0 chr12 133398126 133398275 -10884214 - AluY SINE Alu -74 237 86 547 236 64 96 chr12 133398276 133398419 -10884070 - MIR SINE MIR -48 214 68 2040 83 0 4 chr12 133398419 133398695 -10883794 + AluSg SINE Alu 1 275 -35 228 35 0 0 chr12 133398697 133398726 -10883763 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 1911 117 10 20 chr12 133398726 133399026 -10883463 + AluSq SINE Alu 3 299 -14 2242 75 0 20 chr12 133399030 133399336 -10883153 + AluY SINE Alu 1 300 -11 547 236 64 96 chr12 133399336 133399403 -10883086 - MIR SINE MIR -197 65 2 2067 112 0 16 chr12 133399760 133400074 -10882415 + AluSg SINE Alu 1 309 -1 276 261 277 0 chr12 133400108 133400238 -10882251 + MIR3 SINE MIR 37 202 -6 565 209 0 67 chr12 133400589 133400723 -10881766 - MIR SINE MIR -40 222 98 752 163 7 22 chr12 133400757 133400892 -10881597 - FLAM_C SINE Alu 0 133 1 465 250 116 51 chr12 133400902 133401430 -10881059 - MLT1H1 LTR MaLR 0 555 1 1488 210 94 3 chr12 133401658 133402020 -10880469 + L1M4 LINE L1 4661 5055 -1091 1859 159 0 0 chr12 133402020 133402322 -10880167 + AluJo SINE Alu 1 302 -10 315 317 143 12 chr12 133402454 133402615 -10879874 + L2 LINE L2 2865 3046 -226 2131 111 0 3 chr12 133402699 133402997 -10879492 - AluSx SINE Alu -15 297 1 30 27 0 0 chr12 133402997 133403034 -10879455 + AT_rich Low_complexity Low_complexity 1 37 0 268 210 42 28 chr12 133403285 133403428 -10879061 + (TA)n Simple_repeat Simple_repeat 1 145 0 28 48 0 0 chr12 133403481 133403523 -10878966 + AT_rich Low_complexity Low_complexity 1 42 0 405 216 0 50 chr12 133403524 133403663 -10878826 + AluSg SINE Alu 2 133 -177 1629 145 18 0 chr12 133403887 133404163 -10878326 - AluJo SINE Alu -31 281 1 1488 210 94 3 chr12 133404163 133404525 -10877964 - L1M4 LINE L1 -1091 5055 4661 465 250 116 51 chr12 133404753 133405281 -10877208 + MLT1H1 LTR MaLR 1 555 0 771 156 7 22 chr12 133405291 133405426 -10877063 + FLAM_C SINE Alu 1 133 0 565 209 0 67 chr12 133405460 133405594 -10876895 + MIR SINE MIR 98 222 -40 276 261 277 0 chr12 133405945 133406075 -10876414 - MIR3 SINE MIR -6 202 37 1611 151 0 31 chr12 133406109 133406428 -10876061 - AluSg SINE Alu -1 309 1 263 261 62 0 chr12 133406784 133406849 -10875640 + MIR SINE MIR 2 70 -192 2220 61 0 0 chr12 133406851 133407130 -10875359 - AluYa5 SINE Alu -11 300 22 583 168 0 37 chr12 133407132 133407239 -10875250 + AluSg/x SINE Alu 188 290 -19 797 127 49 0 chr12 133407239 133407381 -10875108 + L1MA7 LINE L1 6120 6268 -23 2217 103 0 0 chr12 133407381 133407691 -10874798 - AluY SINE Alu -1 310 1 1762 162 7 3 chr12 133407692 133407988 -10874501 - AluSx SINE Alu -15 297 1 494 265 26 8 chr12 133408079 133408196 -10874293 - MIR SINE MIR -82 180 62 1007 163 0 0 chr12 133408197 133408357 -10874132 - FRAM SINE Alu -13 163 4 1198 174 113 58 chr12 133408878 133409153 -10873336 + AluJo SINE Alu 2 291 -11 216 0 0 0 chr12 133409158 133409182 -10873307 + (TA)n Simple_repeat Simple_repeat 2 25 0 377 293 187 57 chr12 133409276 133409706 -10872783 + L2 LINE L2 1831 2204 -1110 849 196 6 28 chr12 133409706 133409885 -10872604 - FAM SINE Alu 0 175 1 377 293 187 57 chr12 133409885 133410083 -10872406 + L2 LINE L2 2204 2375 -939 1883 144 0 13 chr12 133410083 133410388 -10872101 - AluSx SINE Alu -11 301 1 377 293 187 57 chr12 133410388 133410603 -10871886 + L2 LINE L2 2375 2561 -753 1594 170 4 0 chr12 133410603 133410862 -10871627 + AluJb SINE Alu 9 268 -44 377 293 187 57 chr12 133410862 133410923 -10871566 + L2 LINE L2 2561 2855 -459 2119 119 0 10 chr12 133411050 133411353 -10871136 + AluSg SINE Alu 1 300 -10 1356 243 136 16 chr12 133412142 133412455 -10870034 + L1MC4 LINE L1 7267 7541 -501 1474 197 0 7 chr12 133412455 133412764 -10869725 + AluJo SINE Alu 1 307 0 1356 243 136 16 chr12 133412764 133413058 -10869431 + L1MC4 LINE L1 7541 7949 -93 1804 117 15 58 chr12 133413594 133413920 -10868569 + AluSx SINE Alu 1 312 0 1604 103 20 32 chr12 133413935 133414208 -10868281 + AluSx SINE Alu 33 302 0 933 174 6 0 chr12 133414274 133414452 -10868037 - AluSp SINE Alu -12 301 123 379 215 6 57 chr12 133414491 133414668 -10867821 + (CGGG)n Simple_repeat Simple_repeat 1 168 0 344 153 62 57 chr12 133414679 133414855 -10867634 + (CGGGG)n Simple_repeat Simple_repeat 3 179 0 * 505 326 0 0 chr12 133414795 133414973 -10867516 + G-rich Low_complexity Low_complexity 1 178 0 1751 129 7 16 chr12 133415385 133415688 -10866801 + AluSq SINE Alu 1 300 -13 404 218 5 66 chr12 133416654 133416851 -10865638 - AluY SINE Alu -114 187 3 958 263 22 45 chr12 133416947 133417259 -10865230 - MLT1K LTR MaLR -273 315 11 2259 62 3 7 chr12 133417909 133418218 -10864271 + AluY SINE Alu 1 308 -3 270 0 0 0 chr12 133418219 133418249 -10864240 + (CA)n Simple_repeat Simple_repeat 2 31 0 1211 170 0 5 chr12 133418279 133418485 -10864004 + AluJb SINE Alu 84 288 -24 35 27 0 0 chr12 133418486 133418523 -10863966 + AT_rich Low_complexity Low_complexity 1 37 0 281 288 0 14 chr12 133418695 133418768 -10863721 + L2 LINE L2 3242 3313 0 1996 108 0 0 chr12 133418799 133419112 -10863377 - AluSg SINE Alu 0 313 1 867 228 126 64 chr12 133419453 133419826 -10862663 - MLT1C LTR MaLR -71 396 1 1733 125 30 52 chr12 133419830 133420135 -10862354 - AluJo SINE Alu -14 298 1 1787 125 10 24 chr12 133420145 133420456 -10862033 - AluSx SINE Alu 0 307 1 1788 184 0 0 chr12 133420758 133421068 -10861421 + AluSx SINE Alu 3 312 0 1038 242 64 33 chr12 133421071 133421214 -10861275 + L1MC5 LINE L1 7440 7577 -384 2131 118 0 3 chr12 133421214 133421510 -10860979 + AluSc SINE Alu 1 295 -14 1038 242 64 33 chr12 133421510 133421816 -10860673 + L1MC5 LINE L1 7577 7903 -58 2099 119 0 3 chr12 133421834 133422136 -10860353 + AluSx SINE Alu 1 301 -11 1333 100 6 0 chr12 133422144 133422324 -10860165 + AluSq SINE Alu 1 181 -132 2425 50 3 0 chr12 133422559 133422860 -10859629 - AluY SINE Alu -9 302 1 2593 147 16 30 chr12 133423052 133423555 -10858934 - L1MC1 LINE L1 0 6333 5838 2219 78 3 0 chr12 133423575 133423881 -10858608 + AluSg SINE Alu 1 307 0 1815 137 7 23 chr12 133423883 133424182 -10858307 + AluJb SINE Alu 1 294 -18 319 167 0 0 chr12 133424190 133424244 -10858245 + U2 snRNA snRNA 1 54 -134 1379 196 52 47 chr12 133424247 133424610 -10857879 + MLT1A1 LTR MaLR 1 365 0 351 0 0 0 chr12 133425088 133425127 -10857362 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2035 119 3 0 chr12 133425130 133425415 -10857074 - AluSx SINE Alu -26 286 1 187 328 0 31 chr12 133425549 133425613 -10856876 - MIR SINE MIR -188 74 13 210 268 0 18 chr12 133425693 133425749 -10856740 - L2 LINE L2 -566 2748 2694 732 188 0 8 chr12 133425752 133425885 -10856604 + FLAM_C SINE Alu 2 133 0 1055 95 0 3 chr12 133426022 133426244 -10856245 + AluSx SINE Alu 2 289 -23 1025 72 0 29 chr12 133426252 133426390 -10856099 + AluSc SINE Alu 1 134 -175 1868 109 38 14 chr12 133426391 133426684 -10855805 + AluSx SINE Alu 1 300 -12 211 269 0 54 chr12 133426717 133426847 -10855642 - L2 LINE L2 -317 2955 2833 204 241 17 17 chr12 133426895 133426953 -10855536 + CT-rich Low_complexity Low_complexity 1 58 0 1574 152 38 24 chr12 133427275 133427564 -10854925 - AluJo SINE Alu -13 299 7 543 187 41 16 chr12 133427581 133427704 -10854785 - L1MA7 LINE L1 -5 6286 6161 2050 119 0 3 chr12 133427959 133428252 -10854237 - AluSg SINE Alu -18 292 1 995 98 0 0 chr12 133428257 133428389 -10854100 - AluSq/x SINE Alu -180 132 1 265 85 21 0 chr12 133428458 133428505 -10853984 + L1MB5 LINE L1 6127 6174 0 466 218 36 41 chr12 133428627 133428765 -10853724 + MLT1L LTR MaLR 377 615 0 538 148 246 42 chr12 133428925 133429067 -10853422 - FRAM SINE Alu -10 166 1 775 184 102 0 chr12 133429170 133429317 -10853172 + Tigger7 DNA MER2_type 89 250 -2237 493 227 10 0 chr12 133429327 133429424 -10853065 + Tigger7 DNA MER2_type 2490 2587 0 2006 121 0 3 chr12 133429544 133429833 -10852656 - AluSx SINE Alu -24 288 1 350 115 0 0 chr12 133429842 133429894 -10852595 + MLT1D LTR MaLR 449 500 -5 451 299 5 33 chr12 133430320 133430504 -10851985 + CT-rich Low_complexity Low_complexity 1 179 0 * 481 343 6 11 chr12 133430367 133430548 -10851941 + C-rich Low_complexity Low_complexity 1 180 0 288 304 216 18 chr12 133431204 133431375 -10851114 + L2 LINE L2 2617 2821 -493 247 158 0 0 chr12 133431502 133431540 -10850949 + MER3 DNA MER1_type 9 46 -163 2429 71 0 0 chr12 133431602 133431912 -10850577 - AluY SINE Alu -1 310 1 2080 108 3 0 chr12 133431912 133432207 -10850282 - AluSp SINE Alu -17 296 1 444 157 34 34 chr12 133432329 133432418 -10850071 + FRAM SINE Alu 73 161 -15 1977 125 10 0 chr12 133432438 133432741 -10849748 - AluSx SINE Alu -6 306 1 410 291 96 20 chr12 133432749 133432948 -10849541 - L1MC4 LINE L1 -547 7495 7282 1846 131 0 21 chr12 133433030 133433313 -10849176 + AluSx SINE Alu 1 277 -35 217 284 136 11 chr12 133433551 133433639 -10848850 + MIR SINE MIR 49 147 -115 289 214 202 0 chr12 133433833 133433917 -10848572 - FLAM_C SINE Alu -23 110 10 528 88 0 0 chr12 133435018 133435086 -10847403 + AluSq/x SINE Alu 53 120 -193 205 267 0 0 chr12 133435286 133435331 -10847158 + CT-rich Low_complexity Low_complexity 2 46 0 480 171 0 9 chr12 133435540 133435645 -10846844 + FLAM_A SINE Alu 30 133 -9 2114 90 7 0 chr12 133436249 133436538 -10845951 + AluY SINE Alu 18 308 -3 1645 104 12 8 chr12 133436742 133436991 -10845498 - AluSc SINE Alu -59 250 1 2267 137 41 53 chr12 133436991 133437162 -10845327 - L1MA7 LINE L1 -185 6106 5935 2625 17 0 0 chr12 133437162 133437460 -10845029 - AluYa5 SINE Alu -12 299 2 2267 137 41 53 chr12 133437460 133437725 -10844764 - L1MA7 LINE L1 -356 5935 5675 281 275 26 50 chr12 133437738 133437946 -10844543 - FRAM SINE Alu 0 166 31 2133 93 21 0 chr12 133438547 133438836 -10843653 + AluSx SINE Alu 1 295 -17 982 163 0 0 chr12 133438839 133439005 -10843484 + AluJo/FRAM SINE Alu 141 306 -6 1033 131 10 17 chr12 133439243 133439371 -10843118 + L1MA5 LINE L1 5649 5776 -398 2012 109 0 3 chr12 133439371 133439656 -10842833 + AluSg SINE Alu 9 292 -18 1033 131 10 17 chr12 133439656 133439719 -10842770 + L1MA5 LINE L1 5776 5838 -336 2295 90 3 0 chr12 133439734 133440035 -10842454 + AluSg SINE Alu 1 302 -8 422 233 35 9 chr12 133440043 133440159 -10842330 - L1MC4 LINE L1 -7 8035 7917 6359 118 8 12 chr12 133440240 133441213 -10841276 - LTR5 LTR ERVK 0 969 1 1436 115 130 30 chr12 133441261 133441531 -10840958 + AluJb SINE Alu 1 297 -15 546 161 8 16 chr12 133441535 133441659 -10840830 + GA-rich Low_complexity Low_complexity 2 124 0 270 207 0 0 chr12 133441734 133441792 -10840697 + GA-rich Low_complexity Low_complexity 4 61 0 408 298 26 0 chr12 133443885 133443999 -10838490 - L2 LINE L2 -4 3309 3193 450 37 0 0 chr12 133444057 133444111 -10838378 - MADE1 DNA Mariner -26 54 1 2204 91 0 3 chr12 133444679 133444977 -10837512 + AluSg SINE Alu 1 297 -13 311 290 65 28 chr12 133445074 133445181 -10837308 + L3 LINE CR1 1249 1359 -218 2170 98 20 0 chr12 133445548 133445853 -10836636 + AluSq SINE Alu 1 311 -2 260 343 149 8 chr12 133446639 133446773 -10835716 - L2 LINE L2 -4 3268 3116 2070 120 0 0 chr12 133447452 133447751 -10834738 - AluSg SINE Alu -11 299 1 288 0 0 0 chr12 133447935 133447967 -10834522 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 842 153 0 0 chr12 133447967 133448091 -10834398 - AluSg SINE Alu -186 124 1 1313 171 82 36 chr12 133448094 133448258 -10834231 - AluJb SINE Alu -7 295 111 1951 117 17 0 chr12 133448258 133448557 -10833932 + AluSq SINE Alu 1 304 -9 1313 171 82 36 chr12 133448557 133448673 -10833816 - AluJb SINE Alu -191 111 2 26 93 0 0 chr12 133449593 133449668 -10832821 + GC_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr12 133449778 133449802 -10832687 + GC_rich Low_complexity Low_complexity 1 24 0 2571 23 0 16 chr12 133449865 133450175 -10832314 + AluY SINE Alu 1 305 -6 224 59 0 29 chr12 133450533 133450567 -10831922 + L2 LINE L2 3281 3313 0 1982 136 0 0 chr12 133450670 133450971 -10831518 - AluSx SINE Alu -11 301 1 720 309 27 14 chr12 133451149 133451372 -10831117 - MIR SINE MIR 0 262 37 357 271 57 36 chr12 133451376 133451516 -10830973 + L1MC4 LINE L1 7720 7862 -180 2142 100 7 0 chr12 133451864 133452154 -10830335 - AluSq SINE Alu -21 292 1 1899 115 49 3 chr12 133453143 133453430 -10829059 + AluSx SINE Alu 1 300 -12 2160 96 10 0 chr12 133453660 133453962 -10828527 + AluSx SINE Alu 5 309 -3 937 279 67 6 chr12 133454171 133454486 -10828003 + L1ME LINE L1 5319 5652 -518 589 158 211 30 chr12 133454503 133454636 -10827853 - MER5A DNA MER1_type -29 160 4 2246 108 0 0 chr12 133454684 133454990 -10827499 + AluSx SINE Alu 1 306 -6 879 171 14 60 chr12 133455037 133455254 -10827235 + AluJo SINE Alu 6 212 -100 1647 179 14 3 chr12 133455705 133455876 -10826613 - AluSg SINE Alu -11 299 122 216 0 0 0 chr12 133455876 133455900 -10826589 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1647 179 14 3 chr12 133455900 133456024 -10826465 - AluSg SINE Alu -188 122 1 1313 171 82 36 chr12 133456027 133456191 -10826298 - AluJb SINE Alu -7 295 111 1906 121 17 0 chr12 133456191 133456488 -10826001 + AluSq SINE Alu 1 302 -11 1313 171 82 36 chr12 133456488 133456604 -10825885 - AluJb SINE Alu -191 111 2 33 80 0 0 chr12 133457528 133457603 -10824886 + GC_rich Low_complexity Low_complexity 1 75 0 2394 29 7 19 chr12 133457799 133458107 -10824382 + AluY SINE Alu 1 304 -7 224 59 0 29 chr12 133458465 133458499 -10823990 + L2 LINE L2 3281 3313 0 1968 139 0 0 chr12 133458602 133458903 -10823586 - AluSx SINE Alu -11 301 1 720 309 27 14 chr12 133459081 133459304 -10823185 - MIR SINE MIR 0 262 37 357 271 57 36 chr12 133459308 133459448 -10823041 + L1MC4 LINE L1 7720 7862 -180 2140 107 7 0 chr12 133459787 133460086 -10822403 - AluSq SINE Alu -12 301 1 1899 115 49 3 chr12 133461075 133461362 -10821127 + AluSx SINE Alu 1 300 -12 2160 96 10 0 chr12 133461592 133461894 -10820595 + AluSx SINE Alu 5 309 -3 937 279 67 6 chr12 133462103 133462418 -10820071 + L1ME3A LINE L1 5319 5652 -518 589 158 211 30 chr12 133462435 133462568 -10819921 - MER5A DNA MER1_type -29 160 4 795 210 63 33 chr12 133462592 133462616 -10819873 + L1ME3A LINE L1 5643 5665 -505 2293 101 0 0 chr12 133462616 133462923 -10819566 + AluSx SINE Alu 1 307 -5 795 210 63 33 chr12 133462923 133463020 -10819469 + L1ME3A LINE L1 5665 5758 -412 2052 123 0 3 chr12 133463020 133463322 -10819167 + AluSg SINE Alu 1 301 -9 2321 53 0 3 chr12 133463322 133463664 -10818825 + AluY SINE Alu 1 341 0 795 210 63 33 chr12 133463664 133463830 -10818659 + L1ME3A LINE L1 5757 5936 -234 2338 76 3 0 chr12 133464401 133464703 -10817786 + AluSp SINE Alu 5 307 -6 1561 139 59 35 chr12 133464750 133465037 -10817452 + AluJb SINE Alu 6 299 -13 730 200 0 0 chr12 133465047 133465177 -10817312 + FLAM_A SINE Alu 1 130 -3 2168 100 3 0 chr12 133465461 133465751 -10816738 - AluSp SINE Alu -22 291 1 651 82 41 10 chr12 133466052 133466150 -10816339 + AluSg/x SINE Alu 195 295 -17 887 226 71 21 chr12 133466151 133466390 -10816099 - L1MD3 LINE L1 -14 7981 7731 207 0 0 0 chr12 133466403 133466426 -10816063 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1368 184 7 48 chr12 133466429 133466723 -10815766 - AluJo SINE Alu -30 282 1 2011 133 0 7 chr12 133466765 133467067 -10815422 - AluSx SINE Alu -12 300 1 2174 113 3 0 chr12 133467548 133467859 -10814630 + AluSx SINE Alu 1 312 0 1150 110 0 0 chr12 133467859 133468023 -10814466 + AluSq SINE Alu 134 297 -16 2079 82 0 4 chr12 133468025 133468304 -10814185 + AluY SINE Alu 1 278 -33 235 0 28 28 chr12 133468309 133468345 -10814144 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 351 65 0 0 chr12 133468516 133468562 -10813927 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 1038 172 0 60 chr12 133469218 133469450 -10813039 - AluJb SINE Alu -9 303 86 820 171 0 0 chr12 133469526 133469655 -10812834 + AluJo/FLAM SINE Alu 1 129 -173 2230 80 7 7 chr12 133469655 133469954 -10812535 - AluSp SINE Alu -14 299 1 1654 152 14 14 chr12 133471525 133471814 -10810675 + AluJo SINE Alu 9 297 -15 2080 112 10 0 chr12 133471834 133472138 -10810351 - AluSx SINE Alu -5 307 1 1025 103 0 0 chr12 133472169 133472305 -10810184 - AluSq/x SINE Alu -177 136 1 1174 202 27 30 chr12 133472305 133472519 -10809970 - LTR8 LTR ERV1 -430 261 47 2344 67 0 0 chr12 133472519 133472816 -10809673 - AluY SINE Alu -14 297 1 1174 202 27 30 chr12 133472816 133472863 -10809626 - LTR8 LTR ERV1 -644 47 1 1241 150 36 0 chr12 133472863 133473083 -10809406 + L1MC3 LINE L1 7545 7772 -13 186 43 0 0 chr12 133473100 133473123 -10809366 + (A)n Simple_repeat Simple_repeat 1 23 0 381 312 99 7 chr12 133473259 133473400 -10809089 - L2 LINE L2 -833 2481 2328 2121 122 0 0 chr12 133473419 133473714 -10808775 + AluSx SINE Alu 1 295 -17 2035 135 0 7 chr12 133474368 133474672 -10807817 - AluSx SINE Alu -10 302 1 708 267 199 3 chr12 133474854 133475225 -10807264 - HAL1b LINE L1 -48 1300 857 189 0 0 0 chr12 133475233 133475254 -10807235 + (T)n Simple_repeat Simple_repeat 1 21 0 1734 133 10 68 chr12 133475726 133476035 -10806454 + AluSx SINE Alu 3 293 -19 521 217 19 43 chr12 133476117 133476278 -10806211 - AluSp/q SINE Alu 0 313 157 661 203 39 7 chr12 133476687 133476840 -10805649 + L1MA7 LINE L1 6129 6286 -5 1584 148 38 28 chr12 133476857 133477147 -10805342 + AluJo SINE Alu 7 299 -13 204 241 17 17 chr12 133477469 133477527 -10804962 + GA-rich Low_complexity Low_complexity 1 58 0 211 269 0 54 chr12 133477575 133477705 -10804784 + L2 LINE L2 2833 2955 -317 2121 89 10 0 chr12 133477738 133478031 -10804458 - AluSx SINE Alu -11 301 6 390 204 172 0 chr12 133478039 133478132 -10804357 + Charlie4 DNA MER1_type 1851 1959 -2 1015 268 49 53 chr12 133478473 133478508 -10803981 - L1MC4a LINE L1 -1856 5952 5918 2051 123 0 22 chr12 133478508 133478825 -10803664 - AluJo SINE Alu -2 310 1 1015 268 49 53 chr12 133478825 133479240 -10803249 - L1MC4a LINE L1 -1890 5918 5504 204 270 14 27 chr12 133479583 133479657 -10802832 + MIR3 SINE MIR 121 193 -15 1749 146 14 14 chr12 133479669 133479957 -10802532 - AluJo SINE Alu -24 288 1 1571 168 7 42 chr12 133479959 133480123 -10802366 - AluJo SINE Alu -13 299 150 2399 69 0 3 chr12 133480123 133480427 -10802062 - AluY SINE Alu -8 303 1 1571 168 7 42 chr12 133480427 133480572 -10801917 - AluJo SINE Alu -162 150 1 252 200 0 0 chr12 133480762 133480817 -10801672 + (CA)n Simple_repeat Simple_repeat 2 56 0 2289 48 7 3 chr12 133480974 133481263 -10801226 + AluY SINE Alu 1 290 -21 2077 115 0 10 chr12 133481462 133481766 -10800723 + AluSx SINE Alu 1 301 -11 2056 125 0 3 chr12 133481766 133482061 -10800428 + AluSc SINE Alu 1 294 -15 235 239 64 28 chr12 133482083 133482192 -10800297 + Tigger1 DNA MER2_type 969 1081 -1337 852 283 43 0 chr12 133482752 133482985 -10799504 + MIR SINE MIR 3 245 -17 423 195 22 89 chr12 133483355 133483545 -10798944 - L1ME2 LINE L1 -172 5992 5791 466 60 0 210 chr12 133483545 133483606 -10798883 - MADE1 DNA Mariner 0 80 46 1895 116 0 0 chr12 133483606 133483873 -10798616 + AluSx SINE Alu 25 291 -21 466 60 0 210 chr12 133483873 133483911 -10798578 - MADE1 DNA Mariner -34 46 2 423 195 22 89 chr12 133483911 133484094 -10798395 - L1ME2 LINE L1 -373 5791 5597 1600 177 0 0 chr12 133484094 133484365 -10798124 - AluJo SINE Alu -12 300 30 423 195 22 89 chr12 133484365 133484626 -10797863 - L1ME2 LINE L1 -567 5597 5353 1996 132 0 0 chr12 133484775 133485063 -10797426 + AluSx SINE Alu 1 288 -24 2279 92 0 0 chr12 133485071 133485365 -10797124 + AluSx SINE Alu 1 294 -18 22 70 0 0 chr12 133485366 133485409 -10797080 + AT_rich Low_complexity Low_complexity 1 43 0 799 159 8 0 chr12 133485659 133485785 -10796704 + AluJo/FLAM SINE Alu 1 127 -175 1126 151 10 5 chr12 133485785 133485984 -10796505 - AluSp SINE Alu -14 299 100 1737 143 0 0 chr12 133485984 133486249 -10796240 - AluSq SINE Alu -48 265 1 1588 166 17 24 chr12 133486281 133486570 -10795919 + AluJo SINE Alu 1 287 -25 572 154 120 51 chr12 133486583 133486700 -10795789 - FLAM_C SINE Alu -7 126 2 1700 113 0 0 chr12 133487792 133488031 -10794458 + AluSx SINE Alu 53 291 -21 563 217 23 8 chr12 133488038 133488167 -10794322 + FLAM_C SINE Alu 1 131 -2 965 176 31 0 chr12 133488254 133488413 -10794076 - FRAM SINE Alu -1 165 2 2212 103 0 0 chr12 133488418 133488720 -10793769 - AluSq SINE Alu -11 302 1 198 0 0 0 chr12 133488723 133488745 -10793744 + (T)n Simple_repeat Simple_repeat 1 22 0 2034 118 0 38 chr12 133488876 133489045 -10793444 - AluSc SINE Alu -8 301 148 2388 53 13 0 chr12 133489045 133489345 -10793144 - AluY SINE Alu -7 304 1 2034 118 0 38 chr12 133489345 133489488 -10793001 - AluSc SINE Alu -161 148 1 795 127 140 119 chr12 133489888 133489920 -10792569 - L1MB7 LINE L1 0 6184 6154 1548 174 7 31 chr12 133489920 133490214 -10792275 + AluJb SINE Alu 1 287 -25 795 127 140 119 chr12 133490214 133490417 -10792072 - L1MB7 LINE L1 -30 6154 5944 1575 145 0 57 chr12 133490500 133490839 -10791650 - AluY SINE Alu 0 311 1 1588 84 0 9 chr12 133490889 133491102 -10791387 - AluSc SINE Alu -98 211 1 194 274 144 39 chr12 133491110 133491263 -10791226 + L2 LINE L2 3145 3313 0 334 274 0 0 chr12 133491319 133491403 -10791086 + L1MB8 LINE L1 6085 6168 -10 2120 112 3 0 chr12 133491814 133492110 -10790379 + AluSq SINE Alu 1 297 -16 1955 78 78 14 chr12 133492112 133492484 -10790005 + AluY SINE Alu 1 390 0 2017 108 4 0 chr12 133492572 133492888 -10789601 + AluSq SINE Alu 4 320 0 2517 89 20 6 chr12 133492888 133493237 -10789252 + L1P5 LINE L1 5433 5786 -365 2293 89 0 3 chr12 133493238 133493542 -10788947 + AluSq SINE Alu 1 303 -10 1416 177 0 30 chr12 133494122 133494387 -10788102 - AluJo SINE Alu -52 260 4 1679 150 0 14 chr12 133494562 133494842 -10787647 - AluJo SINE Alu -30 282 7 225 132 0 0 chr12 133494913 133494951 -10787538 + (A)n Simple_repeat Simple_repeat 1 38 0 647 230 0 0 chr12 133495158 133495271 -10787218 + FLAM_C SINE Alu 6 118 -25 1868 138 10 0 chr12 133495317 133495608 -10786881 + AluSq SINE Alu 2 295 -18 1496 142 4 0 chr12 133495769 133496001 -10786488 + AluSx SINE Alu 45 277 -35 190 296 136 11 chr12 133496241 133496329 -10786160 + MIR SINE MIR 49 147 -115 415 303 205 5 chr12 133496431 133496626 -10785863 + MIR SINE MIR 12 245 -17 1959 54 0 0 chr12 133496737 133496977 -10785512 + AluY SINE Alu 1 240 -71 387 0 0 0 chr12 133496977 133497020 -10785469 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1390 184 19 0 chr12 133497108 133497369 -10785120 + AluSx SINE Alu 4 269 -43 2068 84 10 29 chr12 133497688 133497996 -10784493 - AluY SINE Alu -9 302 1 2297 81 3 0 chr12 133498008 133498316 -10784173 - AluY SINE Alu -2 309 1 355 269 67 0 chr12 133498348 133498452 -10784037 - MIR SINE MIR -62 200 90 1551 122 63 66 chr12 133498484 133498653 -10783836 - AluSg SINE Alu -24 286 117 3000 47 3 3 chr12 133498653 133499014 -10783475 - L1PA7 LINE L1 -6 6148 5788 1551 122 63 66 chr12 133499014 133499131 -10783358 - AluSg SINE Alu -193 117 1 889 129 0 0 chr12 133499160 133499292 -10783197 + AluSq/x SINE Alu 1 132 -181 2082 106 3 10 chr12 133499295 133499598 -10782891 + AluSx SINE Alu 1 301 -11 789 196 25 12 chr12 133499652 133499815 -10782674 - AluJo SINE Alu 0 302 138 980 9 0 0 chr12 133499819 133499931 -10782558 - AluY SINE Alu -12 299 188 703 177 7 43 chr12 133499931 133500072 -10782417 - AluJo SINE Alu -171 141 6 464 322 70 10 chr12 133500087 133500373 -10782116 - L1MEd LINE L1 -4955 834 544 2311 87 3 3 chr12 133500499 133500808 -10781681 - AluSp SINE Alu -4 309 1 753 94 0 0 chr12 133501168 133501274 -10781215 - AluSg/x SINE Alu -7 303 198 1908 115 24 0 chr12 133501442 133501566 -10780923 + AluSx SINE Alu 1 121 -191 180 0 0 0 chr12 133501566 133501586 -10780903 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1908 115 24 0 chr12 133501586 133501756 -10780733 + AluSx SINE Alu 121 302 -10 281 324 48 38 chr12 133501757 133501967 -10780522 + L1MEd LINE L1 1029 1240 -4879 197 265 20 0 chr12 133502604 133502653 -10779836 - MIR SINE MIR -112 150 101 1239 171 0 14 chr12 133502708 133502925 -10779564 - AluJb SINE Alu -13 299 86 387 275 9 28 chr12 133503023 133503132 -10779357 + L2 LINE L2 3152 3258 -55 440 155 0 14 chr12 133503134 133503205 -10779284 - AluJ/FLAM SINE Alu -242 70 1 740 174 90 32 chr12 133503240 133503395 -10779094 + FRAM SINE Alu 1 164 -12 1221 165 0 9 chr12 133503438 133503650 -10778839 + AluJo SINE Alu 87 296 -16 2728 16 0 0 chr12 133503925 133504236 -10778253 + AluYb8 SINE Alu 1 311 -7 2033 103 0 50 chr12 133504305 133504451 -10778038 + AluSc SINE Alu 1 124 -185 2140 107 0 3 chr12 133504451 133504760 -10777729 + AluSg SINE Alu 1 308 -2 2033 103 0 50 chr12 133504760 133504933 -10777556 + AluSc SINE Alu 124 304 -5 1817 102 87 0 chr12 133504960 133505235 -10777254 + AluSg SINE Alu 1 299 -11 564 262 6 48 chr12 133505353 133505521 -10776968 + L2 LINE L2 3152 3312 -1 2388 74 0 0 chr12 133505600 133505898 -10776591 - AluY SINE Alu -13 298 1 2429 62 3 0 chr12 133505910 133506218 -10776271 - AluY SINE Alu -2 309 1 366 267 57 0 chr12 133506250 133506355 -10776134 - MIR SINE MIR -62 200 90 1691 123 52 58 chr12 133506368 133506560 -10775929 - AluSg SINE Alu -3 307 116 3030 47 3 0 chr12 133506560 133506920 -10775569 - L1PA7 LINE L1 -6 6148 5788 1691 123 52 58 chr12 133506920 133507036 -10775453 - AluSg SINE Alu -194 116 1 2121 105 0 16 chr12 133507065 133507200 -10775289 + AluSq SINE Alu 1 137 -176 1905 129 3 23 chr12 133507200 133507509 -10774980 + AluSx SINE Alu 1 303 -9 2121 105 0 16 chr12 133507509 133507686 -10774803 + AluSq SINE Alu 137 308 -5 372 22 0 0 chr12 133507686 133507731 -10774758 + (CA)n Simple_repeat Simple_repeat 2 46 0 2098 105 10 0 chr12 133507739 133508035 -10774454 + AluSx SINE Alu 1 299 -13 234 140 100 0 chr12 133508035 133508085 -10774404 + L1MB4 LINE L1 6125 6179 -1 962 224 54 13 chr12 133508393 133508823 -10773666 + MLT1D LTR MaLR 2 505 0 1940 121 7 3 chr12 133509595 133509892 -10772597 - AluJo SINE Alu -14 298 1 228 35 0 0 chr12 133510209 133510238 -10772251 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2329 48 10 3 chr12 133510669 133510963 -10771526 + AluY SINE Alu 2 297 -14 2267 107 0 0 chr12 133511435 133511745 -10770744 + AluSx SINE Alu 1 310 -2 1521 170 0 21 chr12 133511948 133512236 -10770253 - AluJo SINE Alu -30 282 1 385 232 77 13 chr12 133512236 133512391 -10770098 - L1ME4a LINE L1 -219 5902 5738 1465 146 0 0 chr12 133512438 133512658 -10769831 - AluSx SINE Alu -92 220 1 405 0 0 0 chr12 133513090 133513135 -10769354 + (TG)n Simple_repeat Simple_repeat 2 46 0 2385 84 0 0 chr12 133513994 133514304 -10768185 + AluY SINE Alu 1 310 -1 2187 101 0 0 chr12 133514349 133514645 -10767844 + AluSx SINE Alu 1 296 -16 314 300 80 47 chr12 133514913 133515063 -10767426 + MIR3 SINE MIR 29 183 -25 888 293 150 12 chr12 133515253 133515652 -10766837 + L2 LINE L2 2858 3311 -2 216 0 0 0 chr12 133518335 133518359 -10764130 + (T)n Simple_repeat Simple_repeat 1 24 0 466 273 163 38 chr12 133518738 133518947 -10763542 + MIR SINE MIR 14 248 -14 1959 142 3 0 chr12 133519102 133519404 -10763085 - AluSx SINE Alu -9 303 1 755 138 65 51 chr12 133519408 133519546 -10762943 - AluJo SINE Alu -171 141 2 22 35 0 0 chr12 133520026 133520055 -10762434 + AT_rich Low_complexity Low_complexity 1 29 0 409 196 98 0 chr12 133520728 133520830 -10761659 + MIR SINE MIR 79 190 -72 461 302 67 17 chr12 133521019 133521198 -10761291 + MIR SINE MIR 75 262 0 650 143 61 54 chr12 133521379 133521526 -10760963 + L1MB3 LINE L1 6029 6176 -7 1903 145 21 0 chr12 133521555 133521845 -10760644 + AluJb SINE Alu 1 296 -16 2400 53 7 0 chr12 133522442 133522741 -10759748 - AluSp SINE Alu -12 301 1 235 322 148 0 chr12 133523020 133523135 -10759354 + L2 LINE L2 3138 3269 -3 207 239 30 15 chr12 133523271 133523338 -10759151 - L2 LINE L2 -1010 2304 2237 774 159 15 8 chr12 133524179 133524311 -10758178 + FLAM_A SINE Alu 1 133 0 448 294 77 51 chr12 133524552 133524983 -10757506 - L2 LINE L2 -212 3060 2622 581 290 45 6 chr12 133525270 133525446 -10757043 + MIR SINE MIR 80 262 0 1242 169 109 8 chr12 133525576 133525842 -10756647 - AluJo SINE Alu -19 293 1 2725 7 0 0 chr12 133526199 133526501 -10755988 + AluY SINE Alu 1 302 -9 402 164 78 43 chr12 133526518 133526634 -10755855 - L1ME4a LINE L1 -24 6097 5978 451 220 101 53 chr12 133526666 133526875 -10755614 - L1ME4a LINE L1 -224 5897 5679 199 316 18 0 chr12 133528097 133528154 -10754335 - MER5A DNA MER1_type -60 129 72 2206 81 27 7 chr12 133528403 133528701 -10753788 + AluSc SINE Alu 1 304 -5 365 257 55 9 chr12 133529738 133529847 -10752642 + L1MC5 LINE L1 6717 6830 -1131 586 243 23 56 chr12 133529883 133530097 -10752392 + L1MC5 LINE L1 6941 7147 -814 521 258 95 16 chr12 133530098 133530350 -10752139 + L1MC5 LINE L1 7636 7907 -54 1220 199 8 16 chr12 133530468 133530724 -10751765 - AluJb SINE Alu -57 255 2 798 175 0 0 chr12 133530728 133530848 -10751641 - FLAM_A SINE Alu -17 125 6 256 298 120 58 chr12 133530852 133531043 -10751446 + MIR SINE MIR 52 254 -8 278 119 0 0 chr12 133531218 133531260 -10751229 + MER91 DNA MER1_type 73 114 -26 232 196 22 0 chr12 133531338 133531384 -10751105 + L2 LINE L2 3266 3312 -1 710 210 0 7 chr12 133531490 133531628 -10750861 - FLAM_C SINE Alu -1 142 6 1811 107 0 16 chr12 133532097 133532350 -10750139 - AluSx SINE Alu -59 253 5 214 329 0 25 chr12 133532352 133532431 -10750058 - L2 LINE L2 -10 3262 3186 342 269 118 37 chr12 133532523 133532956 -10749533 - LTR33 LTR ERVL 0 521 2 683 220 150 9 chr12 133532956 133533183 -10749306 - MLT1C LTR MaLR 0 467 209 2173 127 0 0 chr12 133533230 133533538 -10748951 + AluSx SINE Alu 1 308 -4 293 288 38 0 chr12 133533643 133533723 -10748766 - L2 LINE L2 -5 3267 3185 345 311 61 38 chr12 133533870 133534002 -10748487 + MIR SINE MIR 6 140 -122 790 170 50 21 chr12 133534015 133534156 -10748333 + AluJo SINE Alu 1 145 -167 2280 86 3 0 chr12 133534156 133534457 -10748032 + AluY SINE Alu 1 302 -9 33 56 0 0 chr12 133534698 133534752 -10747737 + GC_rich Low_complexity Low_complexity 1 54 0 25 31 0 0 chr12 133534946 133534978 -10747511 + GC_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr12 133535024 133535066 -10747423 + GC_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr12 133535104 133535147 -10747342 + GC_rich Low_complexity Low_complexity 1 43 0 210 234 85 32 chr12 133535198 133535292 -10747197 + (CTGGGG)n Simple_repeat Simple_repeat 2 100 0 1990 105 3 18 chr12 133536608 133536893 -10745596 - AluSx SINE Alu -11 301 21 248 289 53 35 chr12 133537793 133537907 -10744582 + MIR SINE MIR 77 192 -70 1141 203 160 53 chr12 133537921 133538334 -10744155 + MLT1D LTR MaLR 49 505 0 1315 248 29 3 chr12 133538898 133539213 -10743276 - MER33 DNA MER1_type 0 324 2 513 266 123 0 chr12 133539722 133539876 -10742613 + MIR SINE MIR 89 261 -1 1997 108 45 0 chr12 133543130 133543418 -10739071 - AluSx SINE Alu -11 301 1 1588 151 60 14 chr12 133543420 133543705 -10738784 - AluJo SINE Alu -14 298 1 202 281 47 0 chr12 133544229 133544293 -10738196 + MIR SINE MIR 117 183 -79 228 336 32 40 chr12 133544840 133544965 -10737524 - L2 LINE L2 -25 3288 3165 481 281 94 6 chr12 133545509 133545669 -10736820 + MIR SINE MIR 10 183 -79 2033 110 55 7 chr12 133550694 133550986 -10731503 + AluSx SINE Alu 1 306 -6 195 208 83 42 chr12 133552913 133552985 -10729504 + MIR3 SINE MIR 118 192 -16 364 183 144 77 chr12 133553498 133553706 -10728783 - Charlie1 DNA MER1_type -74 2687 2466 299 221 200 0 chr12 133553772 133553867 -10728622 - Charlie1 DNA MER1_type -2647 114 1 2816 196 45 19 chr12 133556537 133557219 -10725270 - L1MB7 LINE L1 -202 5982 5283 1929 123 18 0 chr12 133563162 133563447 -10719042 - AluSx SINE Alu -22 290 1 232 263 91 114 chr12 133563702 133563877 -10718612 - MER5B DNA MER1_type -7 171 1 191 298 0 0 chr12 133564224 133564271 -10718218 - L2 LINE L2 -4 3268 3222 319 272 25 0 chr12 133564551 133564632 -10717857 + L2 LINE L2 3188 3270 -2 758 227 36 17 chr12 133564785 133565419 -10717070 - L1MD1 LINE L1 -2 6240 5557 1378 158 70 7 chr12 133567372 133567645 -10714844 - AluJo SINE Alu -13 299 10 969 172 0 0 chr12 133568205 133568362 -10714127 + AluJb SINE Alu 136 292 -20 325 155 0 0 chr12 133568365 133568423 -10714066 + AluJ/F(R)AM SINE Alu 131 188 -114 1159 271 92 62 chr12 133568597 133569279 -10713210 + L1ME3 LINE L1 5452 6154 -8 558 202 121 72 chr12 133573941 133574164 -10708325 + AluSx SINE Alu 1 234 -78 2283 69 3 3 chr12 133574273 133574562 -10707927 - AluY SINE Alu -22 289 1 2668 147 16 30 chr12 133574754 133575257 -10707232 - L1MC1 LINE L1 0 6333 5838 2272 75 3 0 chr12 133575277 133575583 -10706906 + AluSg SINE Alu 1 307 0 1913 139 7 29 chr12 133575585 133575895 -10706594 + AluJo SINE Alu 1 303 -9 2089 112 7 10 chr12 133575895 133576190 -10706299 + AluSx SINE Alu 1 294 -18 2323 43 0 4 chr12 133577178 133577484 -10705005 - AluY SINE Alu 0 305 1 2156 54 9 29 chr12 133577713 133578029 -10704460 + AluY SINE Alu 1 310 -1 2139 115 0 10 chr12 133578206 133578510 -10703979 + AluSx SINE Alu 1 301 -11 2108 125 0 3 chr12 133578510 133578805 -10703684 + AluSc SINE Alu 1 294 -15 852 283 43 0 chr12 133579496 133579729 -10702760 + MIR SINE MIR 3 245 -17 1772 154 0 22 chr12 133580464 133580775 -10701714 - AluSx SINE Alu -8 304 1 22 70 0 0 chr12 133581053 133581096 -10701393 + AT_rich Low_complexity Low_complexity 1 43 0 2168 102 0 3 chr12 133581097 133581390 -10701099 - AluSg SINE Alu -18 292 1 1558 180 34 10 chr12 133581421 133581716 -10700773 + AluJb SINE Alu 1 302 -10 507 250 42 7 chr12 133581731 133581875 -10700614 - MER21B LTR ERV1 -615 248 100 389 276 0 20 chr12 133581914 133582012 -10700477 - MER21B LTR ERV1 -767 96 1 258 310 86 69 chr12 133582020 133582169 -10700320 - L2 LINE L2 -451 2863 2718 2181 110 7 0 chr12 133582169 133582479 -10700010 - AluSq SINE Alu -1 312 1 2102 123 3 0 chr12 133582479 133582788 -10699701 - AluSx SINE Alu -1 311 2 258 310 86 69 chr12 133582788 133582869 -10699620 - L2 LINE L2 -595 2719 2628 1889 120 0 39 chr12 133583243 133583551 -10698938 - AluSx SINE Alu -3 309 14 2294 92 3 0 chr12 133583555 133583858 -10698631 - AluSx SINE Alu -8 304 1 1481 153 113 7 chr12 133584021 133584296 -10698193 - MER47A DNA MER2_type -1 365 62 1071 157 132 5 chr12 133584591 133584795 -10697694 - AluJo SINE Alu -82 230 1 1442 174 0 30 chr12 133585275 133585540 -10696949 - AluJo SINE Alu -52 260 4 1627 159 0 47 chr12 133585715 133586011 -10696478 - AluJo SINE Alu -30 282 1 1910 143 3 3 chr12 133586084 133586391 -10696098 - AluSx SINE Alu -5 307 1 2162 61 7 4 chr12 133586470 133586747 -10695742 - AluY SINE Alu -16 295 18 690 152 0 9 chr12 133587349 133587461 -10695028 - FLAM_A SINE Alu -9 133 23 808 102 0 0 chr12 133587616 133587724 -10694765 + AluSq/x SINE Alu 1 108 -205 358 90 0 30 chr12 133587725 133587785 -10694704 + FLAM SINE Alu 72 118 -15 25 0 0 0 chr12 133587792 133587817 -10694672 + AT_rich Low_complexity Low_complexity 1 25 0 1955 144 7 3 chr12 133587912 133588218 -10694271 - AluSx SINE Alu -5 307 1 2042 125 0 3 chr12 133588569 133588880 -10693609 - AluSg SINE Alu 0 310 1 2174 113 3 0 chr12 133589361 133589672 -10692817 + AluSx SINE Alu 1 312 0 1150 110 0 0 chr12 133589672 133589836 -10692653 + AluSq SINE Alu 134 297 -16 2079 82 0 4 chr12 133589838 133590117 -10692372 + AluY SINE Alu 1 278 -33 235 0 28 28 chr12 133590122 133590158 -10692331 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 351 65 0 0 chr12 133590329 133590375 -10692114 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 1038 172 0 60 chr12 133591031 133591263 -10691226 - AluJb SINE Alu -9 303 86 820 171 0 0 chr12 133591339 133591468 -10691021 + AluJo/FLAM SINE Alu 1 129 -173 2230 80 7 7 chr12 133591468 133591767 -10690722 - AluSp SINE Alu -14 299 1 786 143 0 0 chr12 133593338 133593450 -10689039 + AluJo/FLAM SINE Alu 9 120 -192 2055 132 0 0 chr12 133593451 133593754 -10688735 - AluSx SINE Alu -9 303 1 1588 166 17 24 chr12 133593786 133594075 -10688414 + AluJo SINE Alu 1 287 -25 572 154 120 51 chr12 133594088 133594205 -10688284 - FLAM_C SINE Alu -7 126 2 1700 113 0 0 chr12 133595297 133595536 -10686953 + AluSx SINE Alu 53 291 -21 649 194 23 8 chr12 133595543 133595672 -10686817 + FLAM_C SINE Alu 1 131 -2 965 176 31 0 chr12 133595759 133595918 -10686571 - FRAM SINE Alu -1 165 2 2249 99 0 0 chr12 133595923 133596225 -10686264 - AluSq SINE Alu -11 302 1 198 0 0 0 chr12 133596228 133596250 -10686239 + (T)n Simple_repeat Simple_repeat 1 22 0 2034 118 0 38 chr12 133596381 133596550 -10685939 - AluSc SINE Alu -8 301 148 2388 53 13 0 chr12 133596550 133596850 -10685639 - AluY SINE Alu -7 304 1 2034 118 0 38 chr12 133596850 133596993 -10685496 - AluSc SINE Alu -161 148 1 23 0 0 0 chr12 133597445 133597468 -10685021 + AT_rich Low_complexity Low_complexity 1 23 0 1703 163 10 10 chr12 133597516 133597816 -10684673 - AluJb SINE Alu -6 306 7 225 132 0 0 chr12 133597887 133597925 -10684564 + (A)n Simple_repeat Simple_repeat 1 38 0 647 230 0 0 chr12 133598132 133598245 -10684244 + FLAM_C SINE Alu 6 118 -25 2193 94 7 0 chr12 133598291 133598589 -10683900 + AluSx SINE Alu 2 301 -11 2211 207 44 77 chr12 133598777 133599018 -10683471 - L1ME1 LINE L1 -150 6016 5768 466 60 0 210 chr12 133599018 133599079 -10683410 - MADE1 DNA Mariner 0 80 46 1895 116 0 0 chr12 133599079 133599346 -10683143 + AluSx SINE Alu 25 291 -21 466 60 0 210 chr12 133599346 133599384 -10683105 - MADE1 DNA Mariner -34 46 2 2211 207 44 77 chr12 133599384 133599567 -10682922 - L1ME1 LINE L1 -398 5768 5580 1600 177 0 0 chr12 133599567 133599838 -10682651 - AluJo SINE Alu -12 300 30 2211 207 44 77 chr12 133599838 133600099 -10682390 - L1ME1 LINE L1 -586 5580 5353 1996 132 0 0 chr12 133600248 133600536 -10681953 + AluSx SINE Alu 1 288 -24 898 87 0 0 chr12 133600544 133600659 -10681830 + AluSq/x SINE Alu 1 115 -198 7738 30 0 1 chr12 133600667 133602241 -10680248 + L1PA5 LINE L1 4599 6154 0 2234 92 7 0 chr12 133602246 133602550 -10679939 - AluSp SINE Alu -7 306 1 232 264 92 109 chr12 133602805 133602979 -10679510 - MER5B DNA MER1_type -7 171 1 191 298 0 0 chr12 133603326 133603373 -10679116 - L2 LINE L2 -4 3268 3222 341 212 15 0 chr12 133603667 133603733 -10678756 + L2 LINE L2 3204 3270 -2 802 223 36 20 chr12 133603886 133604520 -10677969 - L1MD1 LINE L1 -2 6240 5557 1364 156 67 4 chr12 133606475 133606745 -10675744 - AluJo SINE Alu -16 296 10 925 172 0 0 chr12 133607307 133607464 -10675025 + AluJb SINE Alu 136 292 -20 363 155 0 0 chr12 133607467 133607525 -10674964 + AluJ/F(R)AM SINE Alu 131 188 -114 1148 261 100 70 chr12 133607699 133608382 -10674107 + L1ME3 LINE L1 5452 6154 -8 2174 85 0 16 chr12 133610474 133610780 -10671709 + AluSc SINE Alu 9 309 0 2120 112 3 0 chr12 133611089 133611385 -10671104 + AluSq SINE Alu 1 297 -16 1955 78 78 14 chr12 133611387 133611759 -10670730 + AluY SINE Alu 1 390 0 1576 156 57 0 chr12 133611847 133612129 -10670360 + AluJo SINE Alu 4 301 -11 2006 118 0 0 chr12 133612605 133612885 -10669604 - AluSq SINE Alu -33 280 1 2207 106 0 3 chr12 133613081 133613384 -10669105 - AluSq SINE Alu -11 302 1 1216 160 142 41 chr12 133613402 133613670 -10668819 - AluJo SINE Alu -17 295 1 1588 159 50 0 chr12 133613672 133613955 -10668534 - AluJo SINE Alu -15 297 1 231 197 16 0 chr12 133613959 133614020 -10668469 - L1MD1 LINE L1 -952 5194 5133 2329 57 0 7 chr12 133614022 133614323 -10668166 - AluY SINE Alu -12 299 1 877 194 48 0 chr12 133614325 133614511 -10667978 - L1MD1 LINE L1 -1877 4269 4075 795 127 140 119 chr12 133614988 133615020 -10667469 - L1MB7 LINE L1 0 6184 6154 1548 174 7 31 chr12 133615020 133615314 -10667175 + AluJb SINE Alu 1 287 -25 795 127 140 119 chr12 133615314 133615517 -10666972 - L1MB7 LINE L1 -30 6154 5944 2142 92 0 48 chr12 133615600 133615936 -10666553 - AluY SINE Alu 0 311 1 26 0 0 0 chr12 133615936 133615962 -10666527 + AT_rich Low_complexity Low_complexity 1 26 0 1523 110 9 5 chr12 133615982 133616200 -10666289 - AluSx SINE Alu -93 219 1 252 200 0 0 chr12 133616357 133616412 -10666077 + (TG)n Simple_repeat Simple_repeat 2 56 0 1571 168 7 42 chr12 133616602 133616747 -10665742 + AluJo SINE Alu 1 150 -162 2399 69 0 3 chr12 133616747 133617051 -10665438 + AluY SINE Alu 1 303 -8 1571 168 7 42 chr12 133617051 133617215 -10665274 + AluJo SINE Alu 150 299 -13 1776 142 14 14 chr12 133617217 133617505 -10664984 + AluJo SINE Alu 1 288 -24 204 270 14 27 chr12 133617517 133617591 -10664898 - MIR3 SINE MIR -15 193 121 1015 268 49 53 chr12 133617934 133618349 -10664140 + L1MC4a LINE L1 5504 5918 -1890 2051 123 0 22 chr12 133618349 133618666 -10663823 + AluJo SINE Alu 1 310 -2 1015 268 49 53 chr12 133618666 133618701 -10663788 + L1MC4a LINE L1 5918 5952 -1856 390 204 172 0 chr12 133619042 133619135 -10663354 - Charlie4 DNA MER1_type -2 1959 1851 2165 82 10 0 chr12 133619143 133619436 -10663053 + AluSx SINE Alu 6 301 -11 212 279 0 47 chr12 133619469 133619598 -10662891 - L2 LINE L2 -317 2955 2833 204 241 17 17 chr12 133619646 133619704 -10662785 + CT-rich Low_complexity Low_complexity 1 58 0 1622 149 37 27 chr12 133620026 133620322 -10662167 - AluJo SINE Alu -13 299 1 1076 77 12 41 chr12 133620322 133620492 -10661997 - L1MA7 LINE L1 -185 6106 5942 843 57 0 0 chr12 133620493 133620599 -10661890 - AluY SINE Alu -13 298 193 1419 162 56 19 chr12 133620599 133620865 -10661624 - L1MA7 LINE L1 -341 5950 5675 2110 132 0 0 chr12 133620875 133621179 -10661310 - AluSx SINE Alu -8 304 1 397 88 18 0 chr12 133621582 133621639 -10660850 + FAM SINE Alu 119 176 -3 1967 94 54 0 chr12 133621639 133621915 -10660574 + AluSg SINE Alu 1 291 -19 2844 80 17 34 chr12 133621991 133622052 -10660437 + L1P5 LINE L1 5381 5442 -709 1951 124 3 0 chr12 133622052 133622371 -10660118 + AluSq SINE Alu 1 320 0 2844 80 17 34 chr12 133622371 133622720 -10659769 + L1P5 LINE L1 5442 5786 -365 2337 87 0 3 chr12 133622721 133623030 -10659459 + AluSq SINE Alu 1 308 -5 1259 115 0 0 chr12 133623092 133623274 -10659215 - AluSg/x SINE Alu -10 302 121 2339 75 0 0 chr12 133623530 133623835 -10658654 + AluY SINE Alu 1 305 -6 1147 157 5 29 chr12 133623999 133624209 -10658280 + AluJo SINE Alu 87 291 -21 2260 92 0 3 chr12 133624211 133624514 -10657975 + AluSx SINE Alu 1 302 -10 1652 172 28 10 chr12 133624620 133624910 -10657579 + AluJb SINE Alu 1 295 -17 2079 103 7 0 chr12 133626202 133626492 -10655997 + AluY SINE Alu 1 292 -19 2148 100 17 0 chr12 133626506 133626805 -10655684 + AluSp SINE Alu 1 304 -9 1042 263 105 9 chr12 133626834 133627400 -10655089 - L2 LINE L2 -17 3296 2661 2300 55 3 3 chr12 133627401 133627690 -10654799 + AluY SINE Alu 1 289 -22 211 170 43 0 chr12 133627690 133627737 -10654752 - L2 LINE L2 -890 2424 2376 962 217 0 0 chr12 133628553 133628719 -10653770 + FAM SINE Alu 1 166 -9 535 334 207 34 chr12 133629068 133629799 -10652690 + L2 LINE L2 1627 2483 -831 716 260 81 102 chr12 133630057 133630438 -10652051 + L2 LINE L2 2896 3268 -4 258 95 0 0 chr12 133630728 133630770 -10651719 + (TC)n Simple_repeat Simple_repeat 1 42 0 764 80 0 0 chr12 133631180 133631280 -10651209 + HY3 scRNA scRNA 1 100 -1 2253 109 3 10 chr12 133631295 133631598 -10650891 + AluSx SINE Alu 1 301 -11 192 77 0 0 chr12 133632233 133632259 -10650230 + (TA)n Simple_repeat Simple_repeat 2 27 0 265 289 0 0 chr12 133632261 133632351 -10650138 + L1MC4 LINE L1 6614 6703 -1339 348 161 0 0 chr12 133632351 133632413 -10650076 + (TA)n Simple_repeat Simple_repeat 2 63 0 195 42 0 0 chr12 133632573 133632597 -10649892 + (TC)n Simple_repeat Simple_repeat 2 25 0 2356 80 7 0 chr12 133632597 133632886 -10649603 - AluSg SINE Alu -19 291 1 547 259 92 36 chr12 133633138 133633474 -10649015 + L1ME4a LINE L1 5526 5880 -241 1789 135 60 0 chr12 133634237 133634504 -10647985 + AluJb SINE Alu 18 300 -12 2002 158 0 7 chr12 133635139 133635437 -10647052 - AluJo SINE Alu -16 296 1 307 236 56 0 chr12 133635691 133635763 -10646726 - L1M4 LINE L1 -738 5440 5365 1958 161 13 0 chr12 133635795 133635969 -10646520 - AluSg SINE Alu -7 303 122 216 0 0 0 chr12 133635969 133635993 -10646496 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1958 161 13 0 chr12 133635993 133636117 -10646372 - AluSg SINE Alu -188 122 1 1320 170 82 35 chr12 133636120 133636284 -10646205 - AluJb SINE Alu -17 295 111 2080 118 17 0 chr12 133636284 133636581 -10645908 + AluSq SINE Alu 1 302 -11 1320 170 82 35 chr12 133636581 133636698 -10645791 - AluJb SINE Alu -201 111 1 30 69 0 0 chr12 133637616 133637674 -10644815 + GC_rich Low_complexity Low_complexity 1 58 0 2539 33 3 20 chr12 133637883 133638189 -10644300 + AluY SINE Alu 1 301 -10 2329 125 0 3 chr12 133640052 133640363 -10642126 + AluSx SINE Alu 1 310 -2 2184 101 7 0 chr12 133640404 133640720 -10641769 - AluSg SINE Alu 0 318 1 979 129 6 12 chr12 133640735 133640798 -10641691 - L1MA5 LINE L1 -462 5838 5776 2108 115 0 3 chr12 133640798 133641085 -10641404 - AluSx SINE Alu -18 294 9 979 129 6 12 chr12 133641085 133641184 -10641305 - L1MA5 LINE L1 -524 5776 5677 1059 164 0 0 chr12 133641450 133641615 -10640874 - AluJo/FRAM SINE Alu -7 305 141 2254 94 21 0 chr12 133641618 133641906 -10640583 - AluSx SINE Alu -18 294 1 1905 129 11 0 chr12 133642379 133642686 -10639803 + AluSx SINE Alu 1 310 0 534 295 77 10 chr12 133643030 133643237 -10639252 - L2 LINE L2 -221 3051 2831 1759 143 7 47 chr12 133643459 133643760 -10638729 + AluJb SINE Alu 3 291 -21 1964 110 0 4 chr12 133643851 133644106 -10638383 + AluSx SINE Alu 1 254 -58 312 238 29 48 chr12 133644213 133644318 -10638171 + L1MC3 LINE L1 6549 6651 -1134 403 289 0 0 chr12 133644223 133644313 -10638176 - L1MC4 LINE L1 -1339 6703 6614 195 42 0 0 chr12 133644475 133644499 -10637990 + (TC)n Simple_repeat Simple_repeat 2 25 0 463 289 79 51 chr12 133644644 133644901 -10637588 + L1M4 LINE L1 2896 3305 -2841 1824 194 32 41 chr12 133645997 133646029 -10636460 - L1MB5 LINE L1 -10 6164 6133 2096 137 7 0 chr12 133646029 133646329 -10636160 - AluJo SINE Alu -10 302 1 1824 194 32 41 chr12 133646329 133646735 -10635754 - L1MB5 LINE L1 -41 6133 5730 1845 176 3 3 chr12 133646735 133647041 -10635448 - AluJo SINE Alu -4 308 3 227 114 0 0 chr12 133647042 133647077 -10635412 - L1MB5 LINE L1 -569 5609 5575 353 284 203 17 chr12 133647117 133647349 -10635140 + L2 LINE L2 2996 3270 -2 1884 90 102 0 chr12 133647440 133647752 -10634737 - AluSx SINE Alu 0 338 1 475 273 90 70 chr12 133648005 133648194 -10634295 + MIR SINE MIR 2 199 -63 1961 139 0 30 chr12 133648194 133648495 -10633994 + AluJb SINE Alu 1 292 -20 475 273 90 70 chr12 133648495 133648561 -10633928 + MIR SINE MIR 199 262 0 404 194 0 20 chr12 133648654 133648704 -10633785 + L1MB3 LINE L1 6087 6136 -47 1891 167 3 3 chr12 133648704 133649010 -10633479 + AluJo SINE Alu 1 306 -6 404 194 0 20 chr12 133649010 133649057 -10633432 + L1MB3 LINE L1 6136 6182 -1 2197 114 13 0 chr12 133649066 133649364 -10633125 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr12 133649401 133649422 -10633067 + AT_rich Low_complexity Low_complexity 1 21 0 2272 105 3 37 chr12 133649927 133650250 -10632239 - AluSx SINE Alu 0 312 1 1825 165 0 53 chr12 133650358 133650680 -10631809 - AluJo SINE Alu -6 306 2 1074 153 0 0 chr12 133650681 133650838 -10631651 - AluJb SINE Alu -19 293 137 2485 58 3 10 chr12 133650851 133651160 -10631329 - AluY SINE Alu -4 307 1 480 283 22 14 chr12 133651744 133651882 -10630607 + MIR3 SINE MIR 18 156 -52 978 174 0 24 chr12 133651935 133652102 -10630387 - FRAM SINE Alu -14 162 1 461 216 0 11 chr12 133652106 133652194 -10630295 - L2 LINE L2 -3 3310 3224 1808 174 0 17 chr12 133652993 133653292 -10629197 - AluJb SINE Alu -18 294 1 3182 176 39 53 chr12 133653294 133653538 -10628951 + L1MB5 LINE L1 5462 5708 -466 2264 89 0 0 chr12 133653538 133653840 -10628649 + AluY SINE Alu 1 302 0 3182 176 39 53 chr12 133653840 133654317 -10628172 + L1MB5 LINE L1 5708 6174 0 2111 133 3 7 chr12 133654334 133654635 -10627854 + AluSx SINE Alu 1 300 -12 1685 166 3 40 chr12 133654677 133654996 -10627493 + AluJo SINE Alu 1 308 0 482 219 81 28 chr12 133655009 133655249 -10627240 + L1MC2 LINE L1 6171 6397 -1585 2442 76 7 0 chr12 133655249 133655540 -10626949 - AluSg SINE Alu -17 293 1 482 219 81 28 chr12 133655540 133655560 -10626929 + L1MC2 LINE L1 6397 7981 -1 535 244 89 17 chr12 133656073 133656253 -10626236 + MLT1D LTR MaLR 1 193 -312 2260 121 3 0 chr12 133656256 133656554 -10625935 + AluSx SINE Alu 1 299 -13 2162 95 27 10 chr12 133658483 133658779 -10623710 - AluSg SINE Alu -9 301 1 408 313 28 14 chr12 133658783 133658927 -10623562 + L2 LINE L2 3168 3313 0 229 323 75 0 chr12 133658978 133659071 -10623418 - MIR SINE MIR -118 144 45 2252 131 0 0 chr12 133659083 133659395 -10623094 - AluSx SINE Alu 0 312 1 2216 117 7 3 chr12 133659395 133659692 -10622797 - AluSx SINE Alu -13 299 1 2033 110 7 26 chr12 133659695 133660005 -10622484 - AluSx SINE Alu 0 312 9 2260 121 0 3 chr12 133663717 133664024 -10618465 + AluSx SINE Alu 1 306 -6 314 288 38 0 chr12 133664131 133664211 -10618278 - L2 LINE L2 -5 3267 3185 338 311 61 38 chr12 133664358 133664490 -10617999 + MIR SINE MIR 6 140 -122 1605 186 22 50 chr12 133664503 133664644 -10617845 + AluJo SINE Alu 1 144 -168 2440 71 3 3 chr12 133664644 133664938 -10617551 + AluSc SINE Alu 1 294 -15 1605 186 22 50 chr12 133664938 133665113 -10617376 + AluJo SINE Alu 144 308 -4 1812 169 3 13 chr12 133665124 133665432 -10617057 - AluJb SINE Alu -7 305 1 296 259 0 71 chr12 133665723 133665808 -10616681 + MIR SINE MIR 183 261 -1 2382 100 6 0 chr12 133665980 133666291 -10616198 + AluSp SINE Alu 1 313 0 452 162 17 26 chr12 133666292 133666409 -10616080 + GA-rich Low_complexity Low_complexity 2 117 0 367 250 0 0 chr12 133667403 133667483 -10615006 + LTR8 LTR ERV1 612 691 0 315 0 0 0 chr12 133667488 133667523 -10614966 + (CATTA)n Simple_repeat Simple_repeat 5 39 0 2247 108 0 0 chr12 133667525 133667820 -10614669 - AluSx SINE Alu -17 295 1 1642 150 83 15 chr12 133667820 133668159 -10614330 - L1MC3 LINE L1 -252 7533 7172 2126 120 14 0 chr12 133668160 133668452 -10614037 - AluSx SINE Alu -16 296 1 507 250 23 41 chr12 133668452 133668624 -10613865 + L2 LINE L2 2879 3047 -225 2259 120 0 0 chr12 133668664 133668955 -10613534 - AluSx SINE Alu -21 291 1 381 312 99 7 chr12 133668974 133669115 -10613374 + L2 LINE L2 2328 2481 -833 186 43 0 0 chr12 133669251 133669274 -10613215 + (T)n Simple_repeat Simple_repeat 1 23 0 1191 150 36 0 chr12 133669291 133669511 -10612978 - L1MC3 LINE L1 -13 7772 7545 1108 202 27 30 chr12 133669511 133669558 -10612931 + LTR8 LTR ERV1 1 47 -644 2455 71 0 0 chr12 133669558 133669855 -10612634 + AluY SINE Alu 1 297 -14 1108 202 27 30 chr12 133669855 133670069 -10612420 + LTR8 LTR ERV1 47 261 -430 723 119 0 28 chr12 133670069 133670178 -10612311 + AluSq/x SINE Alu 1 106 -207 1884 107 0 16 chr12 133670660 133670913 -10611576 - AluSx SINE Alu -59 253 5 211 350 50 20 chr12 133670915 133671015 -10611474 - L2 LINE L2 -10 3262 3160 336 258 121 40 chr12 133671090 133671519 -10610970 - LTR33 LTR ERVL -4 517 2 1021 216 196 61 chr12 133671519 133671793 -10610696 - MLT1D LTR MaLR 0 505 269 2305 85 6 47 chr12 133671793 133672111 -10610378 + AluSx SINE Alu 1 305 -7 1021 216 196 61 chr12 133672111 133672281 -10610208 - MLT1D LTR MaLR -236 269 1 2230 108 10 3 chr12 133672357 133672664 -10609825 - AluSc SINE Alu 0 309 1 192 274 144 39 chr12 133672672 133672825 -10609664 + L2 LINE L2 3145 3313 0 325 274 0 0 chr12 133672881 133672965 -10609524 + L1MB8 LINE L1 6085 6168 -10 1033 176 0 0 chr12 133673197 133673356 -10609133 + AluJb SINE Alu 137 295 -17 2187 135 0 7 chr12 133674011 133674315 -10608174 - AluSx SINE Alu -10 302 1 662 274 180 14 chr12 133674452 133674868 -10607621 - HAL1b LINE L1 -7 1341 857 189 0 0 0 chr12 133674876 133674897 -10607592 + (T)n Simple_repeat Simple_repeat 1 21 0 1912 129 10 68 chr12 133675370 133675679 -10606810 + AluSx SINE Alu 3 293 -19 297 0 0 0 chr12 133675761 133675794 -10606695 + (T)n Simple_repeat Simple_repeat 1 33 0 925 194 50 50 chr12 133876237 133876275 -10406214 + MER58B DNA MER1_type 117 154 -2266 2371 118 0 0 chr12 133876275 133876579 -10405910 + AluSx SINE Alu 1 304 -8 925 194 50 50 chr12 133876579 133876762 -10405727 + MER58B DNA MER1_type 153 338 -3 2235 99 0 3 chr12 133877130 133877442 -10405047 - AluSx SINE Alu 0 311 1 2324 97 0 3 chr12 133877825 133878123 -10404366 + AluSg SINE Alu 1 297 -13 394 254 104 22 chr12 133878157 133878291 -10404198 - L2 LINE L2 -4 3309 3165 1574 184 65 3 chr12 133878291 133878584 -10403905 + AluJo SINE Alu 1 311 -1 2249 86 0 0 chr12 133878608 133878886 -10403603 + AluSq SINE Alu 21 298 -15 1865 171 52 40 chr12 133879173 133879670 -10402819 + L1MB7 LINE L1 5633 6135 -49 5640 48 3 4 chr12 133879797 133880499 -10401990 + L1PA4 LINE L1 5453 6153 -2 1644 204 80 5 chr12 133880502 133880928 -10401561 - L1P LINE L1 -4004 2142 1685 2909 245 44 26 chr12 133881074 133882147 -10400342 + L1M4 LINE L1 2656 3747 -2399 205 362 63 14 chr12 133883988 133884195 -10398294 + L2 LINE L2 2825 3041 -231 * 219 254 195 25 chr12 133884192 133884310 -10398179 + MIR3 SINE MIR 15 152 -56 593 263 13 48 chr12 133884506 133884734 -10397755 + MLT1K LTR MaLR 98 317 -271 1252 217 65 0 chr12 133884947 133885256 -10397233 - MER20B DNA MER1_type -66 717 389 479 211 204 0 chr12 133885336 133885488 -10397001 - MER20B DNA MER1_type -600 183 1 958 83 0 8 chr12 133885508 133885629 -10396860 + AluSq/x SINE Alu 16 135 -177 2182 109 33 7 chr12 133885630 133885932 -10396557 + AluSg SINE Alu 1 310 0 1822 116 4 0 chr12 133885942 133886183 -10396306 + AluSq SINE Alu 42 283 -30 304 196 0 0 chr12 133886197 133886248 -10396241 + L1MC4 LINE L1 6653 6703 -1339 32 26 0 0 chr12 133886372 133886411 -10396078 + AT_rich Low_complexity Low_complexity 1 39 0 281 305 154 10 chr12 133886648 133886996 -10395493 + L2 LINE L2 2730 3146 -167 369 284 134 0 chr12 133887038 133887165 -10395324 + MIR SINE MIR 44 187 -75 1964 97 0 106 chr12 133887166 133887374 -10395115 - AluSx SINE Alu -2 310 148 2560 63 3 3 chr12 133887374 133887677 -10394812 - AluY SINE Alu -8 303 1 1964 97 0 106 chr12 133887677 133887798 -10394691 - AluSx SINE Alu -164 148 16 479 211 204 0 chr12 133887818 133887970 -10394519 + MER20B DNA MER1_type 1 183 -600 1241 220 65 0 chr12 133888050 133888359 -10394130 + MER20B DNA MER1_type 389 717 -66 2012 183 0 0 chr12 133888404 133888716 -10393773 + AluJb SINE Alu 1 312 0 240 111 0 0 chr12 133888752 133888788 -10393701 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 2162 116 0 0 chr12 133888996 133889303 -10393186 + AluSx SINE Alu 1 307 0 21 57 0 0 chr12 133889472 133889507 -10392982 + AT_rich Low_complexity Low_complexity 1 35 0 579 118 78 0 chr12 133889764 133889866 -10392623 - FLAM_C SINE Alu -12 131 22 1829 145 0 28 chr12 133889889 133890179 -10392310 - AluJo SINE Alu -30 282 1 32 43 0 0 chr12 133891566 133891612 -10390877 + AT_rich Low_complexity Low_complexity 1 46 0 2062 116 10 13 chr12 133891650 133891952 -10390537 + AluSc SINE Alu 1 301 -8 22 56 0 0 chr12 133892657 133892693 -10389796 + AT_rich Low_complexity Low_complexity 1 36 0 2471 83 0 0 chr12 133893057 133893357 -10389132 - AluSx SINE Alu -12 300 1 2228 154 80 7 chr12 133893871 133894307 -10388182 + L1MB7 LINE L1 5701 6168 -16 627 172 95 0 chr12 133894391 133894507 -10387982 - FLAM_A SINE Alu -6 127 1 1050 122 0 0 chr12 133894814 133894962 -10387527 + FRAM SINE Alu 27 174 -2 795 104 0 75 chr12 133897201 133897335 -10385154 - FLAM_C SINE Alu -5 128 5 2084 107 0 4 chr12 133897653 133897933 -10384556 - AluSx SINE Alu -32 280 2 272 276 231 26 chr12 133898396 133898552 -10383937 - MIR SINE MIR -48 214 27 535 244 89 17 chr12 133899150 133899330 -10383159 + MLT1D LTR MaLR 1 193 -312 2260 121 3 0 chr12 133899333 133899631 -10382858 + AluSx SINE Alu 1 299 -13 2162 95 27 10 chr12 133901558 133901854 -10380635 - AluSg SINE Alu -9 301 1 408 313 28 14 chr12 133901858 133902002 -10380487 + L2 LINE L2 3168 3313 0 229 323 75 0 chr12 133902053 133902146 -10380343 - MIR SINE MIR -118 144 45 2259 131 0 0 chr12 133902158 133902470 -10380019 - AluSx SINE Alu 0 312 1 2305 117 0 3 chr12 133902470 133902770 -10379719 - AluSx SINE Alu -13 299 1 2249 114 0 13 chr12 133902773 133903081 -10379408 - AluSx SINE Alu 0 312 9 393 266 32 142 chr12 133903597 133904040 -10378449 + L1MC/D LINE L1 5380 5773 -2035 1775 174 3 10 chr12 133904040 133904338 -10378151 - AluJo SINE Alu -16 296 1 568 148 0 102 chr12 133904373 133904427 -10378062 - L1MB5 LINE L1 -8 6166 6131 2115 90 42 17 chr12 133904427 133904716 -10377773 + AluSg SINE Alu 1 296 -14 568 148 0 102 chr12 133904716 133904789 -10377700 - L1MB5 LINE L1 -43 6131 6052 27 29 0 0 chr12 133904793 133904827 -10377662 + AT_rich Low_complexity Low_complexity 1 34 0 25 65 0 0 chr12 133904854 133904900 -10377589 + AT_rich Low_complexity Low_complexity 1 46 0 1496 167 35 3 chr12 133904900 133905108 -10377381 - L1MA8 LINE L1 -2 6289 6068 2093 126 7 13 chr12 133905108 133905417 -10377072 + AluSx SINE Alu 1 307 -5 1496 167 35 3 chr12 133905417 133905495 -10376994 - L1MA8 LINE L1 -223 6068 5994 857 131 23 10 chr12 133905559 133905819 -10376670 + AluJ SINE Alu 1 312 0 425 329 70 18 chr12 133905851 133906079 -10376410 - L1MC4a LINE L1 -1754 6054 5815 1122 176 11 6 chr12 133906193 133906411 -10376078 + AluSg/x SINE Alu 104 322 0 813 169 0 0 chr12 133906412 133906530 -10375959 - AluJo/FLAM SINE Alu -184 118 1 525 184 0 0 chr12 133907378 133907465 -10375024 + MIR SINE MIR 62 148 -114 462 259 61 15 chr12 133907487 133907618 -10374871 - L2 LINE L2 -1 3312 3176 994 84 8 8 chr12 133907628 133907759 -10374730 + AluSq/x SINE Alu 14 144 -168 230 53 0 0 chr12 133907759 133907797 -10374692 + Alu SINE Alu 263 300 -2 1323 180 57 12 chr12 133907819 133907901 -10374588 + AluJo SINE Alu 39 116 -196 240 35 0 0 chr12 133907901 133907930 -10374559 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1323 180 57 12 chr12 133907930 133908092 -10374397 + AluJo SINE Alu 116 294 -18 512 229 53 107 chr12 133908113 133908199 -10374290 - L2 LINE L2 -176 3137 3048 2035 129 3 16 chr12 133908199 133908510 -10373979 - AluSx SINE Alu -5 307 1 512 229 53 107 chr12 133908510 133908685 -10373804 - L2 LINE L2 -265 3048 2890 226 250 33 33 chr12 133908791 133908851 -10373638 + MIR3 SINE MIR 102 161 -47 358 319 44 0 chr12 133909523 133909658 -10372831 - MIR SINE MIR -80 182 42 869 279 8 33 chr12 133909758 133909998 -10372491 - MIR SINE MIR -22 240 7 1818 127 7 22 chr12 133910030 133910305 -10372184 + AluSx SINE Alu 1 271 -41 824 200 50 82 chr12 133910421 133910641 -10371848 - MIR SINE MIR -33 229 17 385 246 31 31 chr12 133911395 133911525 -10370964 - MIR SINE MIR -62 146 17 182 234 149 0 chr12 133912148 133912195 -10370294 - MIR SINE MIR -110 152 99 626 304 53 26 chr12 133913909 133914136 -10368353 - L2 LINE L2 0 3313 3081 329 301 107 26 chr12 133914143 133914489 -10368000 - L2 LINE L2 -36 3277 2812 2042 130 39 0 chr12 133914523 133914807 -10367682 - AluSx SINE Alu -17 295 1 674 238 0 0 chr12 133914984 133915110 -10367379 - FLAM_A SINE Alu -7 126 1 208 324 231 6 chr12 133915111 133915293 -10367196 - MIR SINE MIR -8 254 32 246 250 241 0 chr12 133915456 133915564 -10366925 - L2 LINE L2 -1 3271 3138 763 161 0 0 chr12 133915583 133915695 -10366794 - FLAM_C SINE Alu -30 113 2 2123 142 3 0 chr12 133915716 133916026 -10366463 - AluSq SINE Alu -2 311 1 537 279 78 11 chr12 133916203 133916382 -10366107 - MIR SINE MIR -15 247 57 2223 124 3 13 chr12 133916519 133916834 -10365655 - AluSx SINE Alu 0 312 1 1079 82 0 7 chr12 133916837 133916972 -10365517 - AluSq/x SINE Alu -178 134 1 213 365 21 28 chr12 133916989 133917054 -10365435 - MIR SINE MIR -1 261 197 1734 179 13 10 chr12 133917054 133917356 -10365133 - AluJo SINE Alu -9 303 1 213 365 21 28 chr12 133917356 133917435 -10365054 - MIR SINE MIR -65 197 118 2188 110 0 0 chr12 133917586 133917867 -10364622 - AluSx SINE Alu -31 281 1 4873 168 45 63 chr12 133917867 133919175 -10363314 - L1M3 LINE L1 -739 5441 4173 1997 136 7 0 chr12 133919175 133919487 -10363002 - AluSx SINE Alu 0 316 3 4873 168 45 63 chr12 133919487 133919609 -10362880 - L1M3 LINE L1 -2007 4173 4050 221 186 23 0 chr12 133920441 133920484 -10362005 + L3 LINE CR1 1519 1562 -15 605 241 46 20 chr12 133921690 133921885 -10360604 - Charlie8 DNA MER1_type -2217 200 1 1376 241 71 18 chr12 133921997 133922433 -10360056 - MLT1C LTR MaLR -8 459 1 532 135 210 0 chr12 133923527 133923627 -10358862 + FLAM_C SINE Alu 2 110 -33 225 320 117 0 chr12 133924482 133924585 -10357904 + L2 LINE L2 3133 3247 -25 292 335 136 28 chr12 133925771 133925947 -10356542 + MIR SINE MIR 53 247 -15 369 329 130 57 chr12 133926534 133926876 -10355613 + L1ME3 LINE L1 5618 5978 -186 493 249 122 10 chr12 133927022 133927227 -10355262 - L1MB8 LINE L1 0 6178 5951 1797 142 0 40 chr12 133927232 133927568 -10354921 - AluJo SINE Alu 0 324 1 1641 182 0 42 chr12 133927854 133928167 -10354322 - AluJo SINE Alu -8 304 5 326 188 29 29 chr12 133928245 133928314 -10354175 - MIR3 SINE MIR -42 166 98 558 173 18 0 chr12 133930838 133930948 -10351541 + L1MA5A LINE L1 6007 6118 -179 939 126 0 0 chr12 133930948 133931083 -10351406 + AluJo SINE Alu 1 135 -177 1129 120 5 16 chr12 133931097 133931281 -10351208 + L1MA5A LINE L1 6114 6295 -2 1758 147 55 17 chr12 133931287 133931579 -10350910 + AluJo SINE Alu 3 305 -7 2097 136 7 0 chr12 133931622 133931932 -10350557 - AluSx SINE Alu 0 312 1 2131 125 0 3 chr12 133931942 133932239 -10350250 - AluSx SINE Alu -16 296 1 1750 197 50 5 chr12 133932270 133932671 -10349818 + L1MB5 LINE L1 5750 6168 -6 2111 121 7 0 chr12 133934859 133935157 -10347332 - AluSx SINE Alu -12 300 1 212 340 43 0 chr12 133935502 133935596 -10346893 + MIR3 SINE MIR 5 102 -106 327 177 0 0 chr12 133938379 133938441 -10344048 + (TGG)n Simple_repeat Simple_repeat 2 63 0 258 125 0 0 chr12 133939880 133939928 -10342561 + (TCC)n Simple_repeat Simple_repeat 3 50 0 301 274 0 48 chr12 133939928 133940012 -10342477 - L1MB8 LINE L1 -1979 5829 5750 697 167 33 8 chr12 133940018 133940138 -10342351 + FLAM_C SINE Alu 7 129 -14 393 269 16 71 chr12 133940841 133940882 -10341607 + L1ME4a LINE L1 5629 5671 -450 834 159 0 0 chr12 133940882 133941014 -10341475 + FLAM_C SINE Alu 1 132 -1 393 269 16 71 chr12 133941014 133941154 -10341335 + L1ME4a LINE L1 5671 5800 -321 248 236 0 118 chr12 133941167 133941311 -10341178 + L1ME4a LINE L1 5901 6027 -94 21 82 0 0 chr12 133941391 133941440 -10341049 + AT_rich Low_complexity Low_complexity 1 49 0 1613 157 23 50 chr12 133941442 133941588 -10340901 + AluJo SINE Alu 1 136 -176 2218 96 3 0 chr12 133941588 133941879 -10340610 + AluSp SINE Alu 8 299 -14 1613 157 23 50 chr12 133941879 133942031 -10340458 + AluJo SINE Alu 136 291 -21 2136 104 27 3 chr12 133942044 133942341 -10340148 + AluSx SINE Alu 3 306 -6 389 291 79 0 chr12 133942345 133942510 -10339979 + L1ME3 LINE L1 5322 5499 -663 271 178 33 133 chr12 133942746 133942836 -10339653 - MER91B DNA MER1_type -109 81 1 498 268 34 119 chr12 133942941 133943176 -10339313 + L1ME3 LINE L1 5508 5762 -400 225 0 0 0 chr12 133943176 133943201 -10339288 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1855 154 7 0 chr12 133943210 133943503 -10338986 + AluJo SINE Alu 1 295 -17 2454 77 0 0 chr12 133943505 133943816 -10338673 + AluY SINE Alu 1 311 0 498 268 34 119 chr12 133943816 133943853 -10338636 + L1ME3 LINE L1 5771 5810 -352 2053 126 3 0 chr12 133943853 133944154 -10338335 + AluSx SINE Alu 6 307 -5 498 268 34 119 chr12 133944154 133944345 -10338144 + L1ME3 LINE L1 5810 5944 -218 2032 149 0 0 chr12 133944488 133944790 -10337699 - AluSx SINE Alu -10 302 1 736 119 119 17 chr12 133944790 133944908 -10337581 - AluJo/FLAM SINE Alu -170 132 3 328 311 180 15 chr12 133945411 133945617 -10336872 + L2 LINE L2 2930 3169 -144 204 169 56 0 chr12 133945774 133945845 -10336644 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 423 217 54 78 chr12 133945846 133945975 -10336514 + MIR SINE MIR 29 154 -108 1169 187 8 42 chr12 133946161 133946216 -10336273 + AluJb SINE Alu 76 131 -181 2639 6 0 64 chr12 133946216 133946544 -10335945 + AluYb8 SINE Alu 1 307 -11 1873 123 0 11 chr12 133946552 133946828 -10335661 + AluSg SINE Alu 38 310 0 1169 187 8 42 chr12 133946828 133947004 -10335485 + AluJb SINE Alu 138 308 -4 305 304 0 29 chr12 133947005 133947107 -10335382 - L1ME LINE L1 -413 5708 5610 1032 231 62 10 chr12 133947261 133947569 -10334920 + LTR16C LTR ERVL 168 491 0 184 296 148 11 chr12 133947620 133947708 -10334781 + MIR SINE MIR 35 134 -74 1208 179 64 99 chr12 133947803 133948116 -10334373 - AluSp SINE Alu 0 303 2 2021 106 35 0 chr12 133948123 133948405 -10334084 - AluSx SINE Alu -20 292 1 216 274 27 16 chr12 133948992 133949072 -10333417 - MIR SINE MIR -75 133 76 2378 84 0 0 chr12 133949771 133950080 -10332409 + AluSx SINE Alu 1 309 -3 266 148 34 136 chr12 133950762 133950850 -10331639 + MER91B DNA MER1_type 3 81 -109 941 254 112 55 chr12 133951974 133952109 -10330380 + L2 LINE L2 2906 3032 -281 1768 145 13 26 chr12 133952109 133952412 -10330077 - AluJo SINE Alu -13 299 1 941 254 112 55 chr12 133952412 133952661 -10329828 + L2 LINE L2 3032 3312 -1 272 346 30 0 chr12 133953216 133953317 -10329172 - MIR SINE MIR -63 145 42 378 273 88 28 chr12 133953429 133953587 -10328902 - MIR SINE MIR -23 185 6 1842 135 10 20 chr12 133955024 133955320 -10327169 - AluJo SINE Alu -16 296 4 218 271 0 0 chr12 133955334 133955382 -10327107 - MIR SINE MIR -91 171 124 1735 113 82 20 chr12 133955410 133955702 -10326787 - AluJo SINE Alu -2 310 1 294 321 73 18 chr12 133955950 133956059 -10326430 - MIR3 SINE MIR -79 129 15 816 191 141 112 chr12 133956067 133956415 -10326074 + MLT1A1 LTR MaLR 3 451 -6 189 293 17 0 chr12 133956531 133956589 -10325900 + L2 LINE L2 3250 3308 -5 326 250 153 24 chr12 133956951 133957075 -10325414 + L2 LINE L2 2494 2633 -681 1741 144 90 0 chr12 133957302 133957580 -10324909 + AluSx SINE Alu 1 303 -9 477 301 108 0 chr12 133957785 133957961 -10324528 - MIR SINE MIR -14 248 54 506 313 119 17 chr12 133958019 133958371 -10324118 - L1MC4a LINE L1 -1869 5939 5552 2238 79 7 7 chr12 133958427 133958731 -10323758 + AluSp SINE Alu 1 304 -9 439 300 22 40 chr12 133958948 133959171 -10323318 + L1MC4a LINE L1 5706 5924 -1884 1984 135 0 3 chr12 133959474 133959771 -10322718 + AluJo SINE Alu 1 296 -16 1163 203 42 22 chr12 133960661 133960972 -10321517 - L1MC/D LINE L1 -623 5710 5394 1727 155 62 3 chr12 133960974 133961265 -10321224 - AluJb SINE Alu -2 310 3 1025 92 30 12 chr12 133961279 133961443 -10321046 - L1MB8 LINE L1 -5 6173 6007 22 0 0 0 chr12 133961541 133961563 -10320926 + GC_rich Low_complexity Low_complexity 1 22 0 213 39 0 0 chr12 133961907 133961933 -10320556 + (A)n Simple_repeat Simple_repeat 1 26 0 1110 162 4 15 chr12 133962206 133962448 -10320041 - AluJb SINE Alu -13 299 1 426 330 63 11 chr12 133962598 133962789 -10319700 + MIR SINE MIR 4 204 -58 210 341 44 0 chr12 133963488 133963579 -10318910 - MIR SINE MIR -109 153 59 197 304 59 59 chr12 133964279 133964414 -10318075 - MIR3 SINE MIR -12 196 62 4602 156 36 23 chr12 133964527 133964850 -10317639 + L1MB7 LINE L1 5007 5324 -860 700 235 0 0 chr12 133964850 133964982 -10317507 + FLAM_A SINE Alu 1 132 -1 4602 156 36 23 chr12 133964982 133965802 -10316687 + L1MB7 LINE L1 5324 6176 -8 2228 91 7 0 chr12 133966309 133966607 -10315882 - AluSp SINE Alu -13 300 1 657 280 20 30 chr12 133966695 133966895 -10315594 - MIR SINE MIR -43 219 22 265 276 102 0 chr12 133966975 133967073 -10315416 + MIR3 SINE MIR 50 157 -51 333 127 0 0 chr12 133967112 133967167 -10315322 + MLT1D LTR MaLR 51 105 -362 * 744 245 102 5 chr12 133967162 133967378 -10315111 + MLT1D LTR MaLR 261 497 -8 571 214 195 34 chr12 133967635 133967902 -10314587 - MLT1C LTR MaLR -141 326 17 349 226 34 73 chr12 133968357 133968484 -10314005 + MIR SINE MIR 69 188 -72 284 306 28 0 chr12 133969498 133969606 -10312883 - L1MA10 LINE L1 -3 6331 6221 185 336 45 37 chr12 133969645 133969779 -10312710 - L2 LINE L2 -158 3114 2980 225 228 140 0 chr12 133970096 133970153 -10312336 + MIR3 SINE MIR 110 174 -34 2142 129 10 0 chr12 133970179 133970473 -10312016 + AluSx SINE Alu 1 297 -15 197 298 8 0 chr12 133970509 133970630 -10311859 + (TG)n Simple_repeat Simple_repeat 2 123 0 291 28 0 0 chr12 133970692 133970728 -10311761 + (TG)n Simple_repeat Simple_repeat 1 36 0 194 312 55 89 chr12 133970784 133971021 -10311468 - L2 LINE L2 -50 3222 2994 3359 180 77 3 chr12 133971059 133971283 -10311206 + L1MB5 LINE L1 5451 5657 -517 2511 53 0 3 chr12 133971283 133971584 -10310905 + AluY SINE Alu 1 300 -11 3359 180 77 3 chr12 133971584 133972026 -10310463 + L1MB5 LINE L1 5657 6166 -8 2228 107 0 0 chr12 133973069 133973385 -10309104 + AluSc SINE Alu 1 316 0 263 198 315 36 chr12 133974462 133974573 -10307916 + MIR3 SINE MIR 5 146 -62 762 172 90 0 chr12 133974573 133974718 -10307771 + MLT1A2 LTR MaLR 1 158 -216 714 220 43 1 chr12 133974875 133975083 -10307406 + MLT1B LTR MaLR 155 390 0 2301 107 0 0 chr12 133976261 133976561 -10305928 + AluSq SINE Alu 1 300 -13 1123 148 6 6 chr12 133976740 133976916 -10305573 - AluJb SINE Alu -15 297 122 493 211 26 26 chr12 133977295 133977409 -10305080 + FLAM_C SINE Alu 16 129 -14 1067 218 41 32 chr12 133977412 133977752 -10304737 + LTR55 LTR ERV 111 453 -95 421 283 99 13 chr12 133979227 133979379 -10303110 + MIR SINE MIR 17 181 -81 216 208 0 0 chr12 133979512 133979560 -10302929 - L2 LINE L2 -350 2963 2916 1033 163 10 56 chr12 133979695 133979891 -10302598 + AluJ SINE Alu 1 187 -125 206 246 0 9 chr12 133979901 133979972 -10302517 - L2 LINE L2 -329 2984 2916 743 150 7 54 chr12 133980024 133980171 -10302318 + AluJ SINE Alu 173 312 0 316 273 39 13 chr12 133980171 133980248 -10302241 + HAL1b LINE L1 607 685 -663 1489 178 83 10 chr12 133980426 133980735 -10301754 + L1MC1 LINE L1 5994 6326 -3 2086 103 10 33 chr12 133980735 133981037 -10301452 + AluJb SINE Alu 11 305 -7 1112 139 27 22 chr12 133981070 133981293 -10301196 + L1MB4 LINE L1 5957 6180 0 339 143 39 0 chr12 133981299 133981376 -10301113 + L1MB8 LINE L1 6093 6172 -6 296 232 61 66 chr12 133981376 133981574 -10300915 + HAL1b LINE L1 955 1151 -197 28 48 0 0 chr12 133981661 133981703 -10300786 + AT_rich Low_complexity Low_complexity 1 42 0 387 312 80 0 chr12 133981963 133982101 -10300388 + MIR SINE MIR 66 214 -48 236 194 370 0 chr12 133984030 133984138 -10298351 - MIR3 SINE MIR -52 156 9 924 169 12 29 chr12 133985654 133985826 -10296663 - FRAM SINE Alu -8 168 1 1104 230 123 53 chr12 133985840 133986353 -10296136 + L2 LINE L2 1432 1980 -1334 181 211 115 0 chr12 133987252 133987304 -10295185 - MIR SINE MIR -67 195 138 1892 124 76 31 chr12 133987314 133987669 -10294820 - L1MB7 LINE L1 -16 6168 5798 208 369 63 18 chr12 133988258 133988369 -10294120 + MER5A DNA MER1_type 49 164 -25 239 256 100 44 chr12 133988271 133988361 -10294128 - MER5B DNA MER1_type -50 128 34 396 349 111 15 chr12 133988483 133988681 -10293808 - L2 LINE L2 -1 3271 3055 2243 119 0 3 chr12 133988693 133988988 -10293501 + AluSc SINE Alu 1 294 -15 2115 119 3 36 chr12 133989056 133989275 -10293214 + L1MB3 LINE L1 5796 6000 -183 2875 16 0 0 chr12 133989275 133989586 -10292903 - AluYb8 SINE Alu -7 311 1 2115 119 3 36 chr12 133989586 133989726 -10292763 + L1MB3 LINE L1 6000 6143 -40 2064 140 0 0 chr12 133989726 133990012 -10292477 + AluJo SINE Alu 1 286 -26 252 0 0 0 chr12 133990012 133990040 -10292449 + (CA)n Simple_repeat Simple_repeat 2 29 0 259 254 210 72 chr12 133990265 133990670 -10291819 + L2 LINE L2 2815 3275 -38 193 213 0 43 chr12 133990729 133990776 -10291713 + L2 LINE L2 3262 3306 -7 304 304 33 0 chr12 133991249 133991341 -10291148 - MIR SINE MIR -73 135 41 448 279 39 0 chr12 133991834 133991938 -10290551 - MER91C DNA MER1_type -2 138 31 339 321 46 61 chr12 133992346 133992757 -10289732 - L1MEd LINE L1 -5204 915 511 1134 226 20 169 chr12 133992781 133993131 -10289358 - AluSx SINE Alu -4 298 1 393 208 0 144 chr12 133993176 133993301 -10289188 - MIR SINE MIR -80 182 76 816 182 7 26 chr12 133993341 133993495 -10288994 + AluJb SINE Alu 146 296 -16 2366 100 7 0 chr12 133993507 133993816 -10288673 - AluSp SINE Alu -2 311 1 617 162 0 26 chr12 133993859 133993976 -10288513 - MLT1C LTR MaLR -2 465 352 1336 202 4 8 chr12 133993976 133994234 -10288255 + AluJo SINE Alu 50 306 -6 305 290 95 10 chr12 133994272 133994472 -10288017 - L1M4 LINE L1 -2303 3843 3627 1604 171 47 17 chr12 133994477 133994775 -10287714 - AluJo SINE Alu -5 307 1 376 333 0 23 chr12 133994794 133995013 -10287476 - L1M4 LINE L1 -3056 3090 2877 1060 169 38 53 chr12 133995044 133995153 -10287336 - L1MD2 LINE L1 -2 6357 6248 2291 79 3 7 chr12 133995153 133995443 -10287046 - AluSp SINE Alu -8 305 17 1060 169 38 53 chr12 133995443 133995599 -10286890 - L1MD2 LINE L1 -111 6248 6096 676 148 9 17 chr12 133995698 133995813 -10286676 - FRAM SINE Alu -6 170 57 241 228 101 51 chr12 133996201 133996280 -10286209 + MLT1K LTR MaLR 502 584 -4 2346 115 0 0 chr12 133996377 133996682 -10285807 + AluSx SINE Alu 6 310 -2 2222 108 10 7 chr12 133996697 133996994 -10285495 + AluSx SINE Alu 1 298 -14 738 128 8 0 chr12 133996994 133997111 -10285378 + L1MB7 LINE L1 5578 5695 -485 1863 170 14 14 chr12 133997145 133997510 -10284979 + L1MB7 LINE L1 5666 6030 -154 626 158 13 20 chr12 133997510 133997662 -10284827 + CT-rich Low_complexity Low_complexity 4 154 0 304 100 0 0 chr12 133997664 133997704 -10284785 + (TC)n Simple_repeat Simple_repeat 1 40 0 814 228 0 0 chr12 133997705 133997850 -10284639 - AluJo SINE Alu -39 273 129 34 0 0 0 chr12 133997850 133997884 -10284605 + AT_rich Low_complexity Low_complexity 1 34 0 2246 124 0 16 chr12 133997891 133998206 -10284283 - AluSx SINE Alu 0 312 3 608 192 23 54 chr12 133998207 133998337 -10284152 - AluJo SINE Alu -166 146 21 182 36 0 36 chr12 133998351 133998379 -10284110 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2302 129 0 0 chr12 133998381 133998692 -10283797 - AluSx SINE Alu -1 311 1 877 134 18 30 chr12 133998692 133998856 -10283633 + L1MB7 LINE L1 6022 6183 -1 593 240 65 0 chr12 133998867 133999021 -10283468 + L1ME3A LINE L1 6007 6170 0 180 395 100 5 chr12 133999621 133999709 -10282780 - L2 LINE L2 -428 2886 2808 2305 106 0 25 chr12 133999709 134000029 -10282460 - AluSx SINE Alu 0 312 1 180 395 100 5 chr12 134000029 134000140 -10282349 - L2 LINE L2 -506 2808 2668 239 234 156 68 chr12 134000392 134000421 -10282068 - L1ME2 LINE L1 -227 5937 5912 2494 61 0 10 chr12 134000421 134000731 -10281758 - AluY SINE Alu -4 307 1 239 234 156 68 chr12 134000731 134000973 -10281516 - L1ME2 LINE L1 -252 5912 5646 438 261 119 21 chr12 134001020 134001336 -10281153 - MLT1G1 LTR MaLR -68 522 161 1108 164 0 44 chr12 134001336 134001505 -10280984 - AluJo SINE Alu -18 294 132 1760 129 42 3 chr12 134001505 134001791 -10280698 - AluSq SINE Alu 0 313 17 1108 164 0 44 chr12 134001791 134001804 -10280685 - AluJo SINE Alu -180 132 120 1093 180 0 6 chr12 134001959 134002142 -10280347 - AluJb SINE Alu -2 310 129 2025 137 0 29 chr12 134002146 134002453 -10280036 - AluSx SINE Alu -14 298 1 409 176 120 9 chr12 134002455 134002563 -10279926 - L1MC4a LINE L1 -633 7175 7056 346 211 167 0 chr12 134002596 134002686 -10279803 - FLAM_A SINE Alu -1 132 28 1228 218 20 23 chr12 134002719 134003022 -10279467 - L1MC4 LINE L1 -974 7068 6767 1429 135 0 10 chr12 134003022 134003229 -10279260 + AluSx SINE Alu 1 205 -107 2398 109 3 0 chr12 134003264 134003575 -10278914 - AluSp SINE Alu -1 312 1 352 360 22 7 chr12 134003928 134004064 -10278425 - L1ME3A LINE L1 -222 5948 5811 2272 102 7 3 chr12 134004165 134004470 -10278019 + AluY SINE Alu 1 306 -5 561 143 58 10 chr12 134004665 134004809 -10277680 + L1MB7 LINE L1 6031 6178 0 1719 144 47 4 chr12 134004812 134005090 -10277399 - AluJo SINE Alu -22 290 1 2233 115 0 0 chr12 134005120 134005424 -10277065 + AluSg SINE Alu 1 304 -6 2313 58 47 0 chr12 134005428 134005704 -10276785 + AluSc SINE Alu 7 295 -14 641 90 0 148 chr12 134005767 134005889 -10276600 - AluJb SINE Alu -21 291 188 1509 175 0 76 chr12 134005921 134006236 -10276253 - AluJo SINE Alu -21 291 1 370 132 15 0 chr12 134006329 134006397 -10276092 - L1MC4 LINE L1 -455 7587 7519 1933 143 0 0 chr12 134006805 134007070 -10275419 - AluSx SINE Alu -47 265 1 1098 201 111 66 chr12 134007925 134008065 -10274424 - AluJo SINE Alu 0 302 170 2105 133 3 3 chr12 134008065 134008367 -10274122 - AluSx SINE Alu -9 303 2 1098 201 111 66 chr12 134008367 134008514 -10273975 - AluJo SINE Alu -132 170 2 2193 130 0 16 chr12 134008837 134009153 -10273336 + AluSx SINE Alu 1 311 -1 852 237 0 0 chr12 134009444 134009621 -10272868 + AluJo SINE Alu 126 302 -10 2318 106 0 6 chr12 134010099 134010410 -10272079 - AluSx SINE Alu -3 309 1 2038 111 36 0 chr12 134010472 134010752 -10271737 - AluSc SINE Alu -19 290 1 451 268 16 24 chr12 134011207 134011334 -10271155 + MIR3 SINE MIR 78 203 -5 905 144 0 0 chr12 134011629 134011761 -10270728 + FLAM_C SINE Alu 1 132 -1 21 0 0 0 chr12 134011820 134011841 -10270648 + AT_rich Low_complexity Low_complexity 1 21 0 1003 299 152 50 chr12 134012036 134012235 -10270254 - L2 LINE L2 -340 2974 2797 2435 54 0 10 chr12 134012235 134012533 -10269956 + AluY SINE Alu 2 296 -15 1003 299 152 50 chr12 134012533 134013016 -10269473 - L2 LINE L2 -517 2797 2187 2624 47 0 0 chr12 134013016 134013312 -10269177 + AluY SINE Alu 2 297 -14 1003 299 152 50 chr12 134013312 134013479 -10269010 - L2 LINE L2 -1127 2187 2038 3559 173 98 65 chr12 134013503 134014387 -10268102 - MER21A LTR ERV1 -17 914 1 2393 95 20 0 chr12 134014512 134014818 -10267671 + AluSx SINE Alu 1 312 0 983 137 0 13 chr12 134015515 134015668 -10266821 - AluSp/q SINE Alu -8 305 155 2444 80 0 7 chr12 134015708 134016008 -10266481 - AluY SINE Alu -13 298 1 1241 220 65 0 chr12 134016053 134016362 -10266127 - MER20B DNA MER1_type -66 717 389 397 207 220 0 chr12 134016442 134016592 -10265897 - MER20B DNA MER1_type -600 183 1 1970 97 0 103 chr12 134016612 134016734 -10265755 + AluSx SINE Alu 16 149 -163 2560 63 3 3 chr12 134016734 134017037 -10265452 + AluY SINE Alu 1 303 -8 1970 97 0 103 chr12 134017037 134017243 -10265246 + AluSx SINE Alu 149 310 -2 369 284 134 0 chr12 134017244 134017371 -10265118 - MIR SINE MIR -75 187 44 294 301 154 10 chr12 134017413 134017761 -10264728 - L2 LINE L2 -167 3146 2730 32 26 0 0 chr12 134017998 134018037 -10264452 + AT_rich Low_complexity Low_complexity 1 39 0 304 196 0 0 chr12 134018166 134018217 -10264272 - L1MC4 LINE L1 -1339 6703 6653 1822 116 4 0 chr12 134018231 134018472 -10264017 - AluSq SINE Alu -30 283 42 2235 116 3 6 chr12 134018482 134018793 -10263696 - AluSg SINE Alu 0 310 1 1921 144 17 10 chr12 134019199 134019498 -10262991 - AluJb SINE Alu -11 301 1 1098 247 125 9 chr12 134019698 134020042 -10262447 + L2 LINE L2 2466 2849 -465 1532 112 27 39 chr12 134020047 134020120 -10262369 - Tigger5 DNA MER2_type -4 2319 2247 1764 184 14 3 chr12 134020120 134020413 -10262076 + AluJb SINE Alu 1 296 -16 1532 112 27 39 chr12 134020413 134020599 -10261890 - Tigger5 DNA MER2_type -76 2247 2063 2332 89 0 3 chr12 134020600 134020891 -10261598 + AluSc SINE Alu 1 290 -19 24 0 0 0 chr12 134021016 134021040 -10261449 + AT_rich Low_complexity Low_complexity 1 24 0 1841 150 33 0 chr12 134021073 134021381 -10261108 - AluSx SINE Alu 0 317 1 913 145 0 0 chr12 134021404 134021528 -10260961 - FLAM_C SINE Alu -19 124 1 1360 52 0 0 chr12 134021988 134022141 -10260348 - AluY SINE Alu -158 153 1 2279 112 0 0 chr12 134022839 134023135 -10259354 - AluSg SINE Alu -14 296 1 1921 144 17 10 chr12 134023541 134023840 -10258649 - AluJb SINE Alu -11 301 1 1164 243 118 9 chr12 134024034 134024380 -10258109 + L2 LINE L2 2466 2849 -465 1532 112 27 39 chr12 134024385 134024458 -10258031 - Tigger5 DNA MER2_type -4 2319 2247 1764 184 14 3 chr12 134024458 134024751 -10257738 + AluJb SINE Alu 1 296 -16 1532 112 27 39 chr12 134024751 134024937 -10257552 - Tigger5 DNA MER2_type -76 2247 2063 321 203 0 0 chr12 134024939 134025003 -10257486 + AluS SINE Alu 2 65 -236 527 129 0 0 chr12 134025701 134025786 -10256703 + L1MB4 LINE L1 6062 6146 -34 353 269 200 12 chr12 134026309 134026469 -10256020 + MIR SINE MIR 40 229 -33 1935 221 45 7 chr12 134026776 134027223 -10255266 - MLT1C LTR MaLR 0 467 4 2465 44 0 0 chr12 134027529 134027803 -10254686 - AluY SINE Alu -21 290 17 239 370 42 17 chr12 134027875 134027994 -10254495 + MIR3 SINE MIR 81 202 -6 258 189 0 19 chr12 134028196 134028249 -10254240 + AluJo SINE Alu 84 135 -167 1919 124 7 62 chr12 134028249 134028385 -10254104 + AluSx SINE Alu 1 143 -169 2424 107 0 0 chr12 134028385 134028695 -10253794 + AluSx SINE Alu 3 312 0 1919 124 7 62 chr12 134028695 134028864 -10253625 + AluSx SINE Alu 143 289 -23 437 169 52 0 chr12 134028864 134028941 -10253548 + AluJ/FRAM SINE Alu 216 296 -16 1695 180 6 6 chr12 134028945 134029256 -10253233 - AluSx SINE Alu -1 311 1 2611 71 0 0 chr12 134029631 134029942 -10252547 + AluY SINE Alu 1 311 0 2035 143 0 17 chr12 134029955 134030256 -10252233 + AluSq SINE Alu 1 296 -17 2249 125 0 0 chr12 134030435 134030740 -10251749 + AluSx SINE Alu 1 305 -7 706 196 161 7 chr12 134030783 134030926 -10251563 + AluJb SINE Alu 136 300 -12 2368 84 10 0 chr12 134031114 134031410 -10251079 - AluSc SINE Alu -10 299 1 1608 109 194 0 chr12 134031458 134031705 -10250784 - AluSg SINE Alu -9 301 7 2355 110 3 0 chr12 134031787 134032096 -10250393 - AluSx SINE Alu -2 310 1 610 198 108 166 chr12 134032408 134032601 -10249888 - HsTC2 DNA Tc2 0 1898 1695 819 172 0 8 chr12 134032601 134032735 -10249754 - FLAM_C SINE Alu 0 133 1 610 198 108 166 chr12 134032735 134032746 -10249743 - HsTC2 DNA Tc2 -203 1695 1685 2272 107 0 7 chr12 134032746 134033036 -10249453 - AluSc SINE Alu -21 288 1 610 198 108 166 chr12 134033036 134033192 -10249297 - HsTC2 DNA Tc2 -213 1685 1521 1677 171 13 42 chr12 134033192 134033501 -10248988 - AluJo SINE Alu -12 300 1 610 198 108 166 chr12 134033501 134033789 -10248700 - HsTC2 DNA Tc2 -377 1521 1286 393 232 16 64 chr12 134033776 134033901 -10248588 - HsTC2 DNA Tc2 -1743 155 37 * 2302 98 0 0 chr12 134034109 134034395 -10248094 - AluSx SINE Alu -18 294 9 2072 130 0 27 chr12 134034773 134035074 -10247415 - AluSx SINE Alu -19 293 1 267 61 0 0 chr12 134035121 134035154 -10247335 - U2 snRNA snRNA -155 33 1 2314 109 7 0 chr12 134035341 134035644 -10246845 - AluSp SINE Alu -8 305 1 2027 144 0 10 chr12 134035679 134035971 -10246518 + AluJb SINE Alu 1 289 -23 1893 162 3 0 chr12 134037989 134038279 -10244210 + AluJo SINE Alu 4 294 -18 2137 127 0 26 chr12 134038706 134039013 -10243476 + AluSx SINE Alu 1 299 -13 473 276 109 46 chr12 134039710 134039846 -10242643 + MIR SINE MIR 9 135 -127 2395 62 16 44 chr12 134039846 134040166 -10242323 - AluY SINE Alu 0 311 1 473 276 109 46 chr12 134040166 134040268 -10242221 + MIR SINE MIR 135 262 0 1322 179 83 0 chr12 134040435 134040664 -10241825 + AluJb SINE Alu 58 305 -7 25 31 0 0 chr12 134040794 134040826 -10241663 + AT_rich Low_complexity Low_complexity 1 32 0 2222 134 0 3 chr12 134040829 134041136 -10241353 - AluSx SINE Alu -6 306 1 2568 38 0 3 chr12 134041566 134041858 -10240631 - AluY SINE Alu -16 295 5 2267 112 0 0 chr12 134041858 134042162 -10240327 - AluSg SINE Alu -6 304 1 1719 150 43 4 chr12 134042192 134042472 -10240017 + AluJo SINE Alu 1 291 -21 1912 186 51 32 chr12 134042483 134043009 -10239480 - L1MB7 LINE L1 -16 6168 5633 2249 86 0 0 chr12 134043296 134043574 -10238915 - AluSq SINE Alu -15 298 21 1324 185 87 3 chr12 134043598 134043885 -10238604 - AluJo SINE Alu -1 311 1 387 284 67 15 chr12 134043885 134044019 -10238470 + L2 LINE L2 3169 3309 -4 2264 95 10 3 chr12 134044053 134044348 -10238141 - AluSg SINE Alu -13 297 1 2314 101 3 3 chr12 134044731 134045029 -10237460 + AluSx SINE Alu 1 298 -14 2091 146 0 0 chr12 134045358 134045667 -10236822 - AluSx SINE Alu -3 309 1 748 185 23 0 chr12 134046020 134046150 -10236339 - FLAM_A SINE Alu 0 133 1 489 263 88 28 chr12 134046251 134046502 -10235987 - HAL1 LINE L1 -60 2447 2182 414 0 0 0 chr12 134046503 134046549 -10235940 + (TG)n Simple_repeat Simple_repeat 2 47 0 736 130 0 0 chr12 134046560 134046668 -10235821 - AluSg/x SINE Alu -7 302 195 1234 116 177 47 chr12 134046771 134047048 -10235441 + MER4E LTR ERV1 467 779 0 2356 95 7 0 chr12 134047142 134047438 -10235051 + AluSp SINE Alu 1 298 -15 2091 146 0 0 chr12 134047767 134048076 -10234413 - AluSx SINE Alu -3 309 1 748 185 23 0 chr12 134048429 134048559 -10233930 - FLAM_A SINE Alu 0 133 1 489 263 88 28 chr12 134048660 134048911 -10233578 - HAL1 LINE L1 -60 2447 2182 378 0 0 0 chr12 134048912 134048954 -10233535 + (TG)n Simple_repeat Simple_repeat 2 43 0 1907 106 62 0 chr12 134048965 134049238 -10233251 - AluSg SINE Alu -4 306 17 1526 123 38 88 chr12 134049472 134049786 -10232703 + L1MB3 LINE L1 5835 6130 -53 2154 89 45 0 chr12 134049786 134050077 -10232412 + AluSq SINE Alu 1 304 -9 1526 123 38 88 chr12 134050077 134050127 -10232362 + L1MB3 LINE L1 6130 6181 -2 293 280 56 16 chr12 134050158 134050283 -10232206 - L2 LINE L2 -169 3144 3015 229 284 242 0 chr12 134050832 134050927 -10231562 + MIR SINE MIR 36 153 -55 672 236 0 65 chr12 134051472 134051671 -10230818 - MER3 DNA MER1_type -21 188 3 334 283 81 0 chr12 134051678 134051808 -10230681 - MIR SINE MIR -62 146 44 1002 147 0 43 chr12 134052132 134052295 -10230194 + FRAM SINE Alu 1 156 -10 2536 139 30 35 chr12 134052302 134052763 -10229726 + L1MB5 LINE L1 5716 6174 0 2241 95 61 3 chr12 134052873 134053169 -10229320 + AluSq SINE Alu 1 313 0 276 200 0 29 chr12 134054390 134054460 -10228029 + CT-rich Low_complexity Low_complexity 2 69 0 397 337 12 6 chr12 134057310 134057482 -10225007 + (CA)n Simple_repeat Simple_repeat 2 174 0 379 209 26 4 chr12 134057864 134058099 -10224390 + (TG)n Simple_repeat Simple_repeat 1 240 0 297 299 137 31 chr12 134058265 134058457 -10224032 - MIR SINE MIR -50 212 8 281 137 59 0 chr12 134058971 134059022 -10223467 + MIR SINE MIR 114 167 -95 232 246 49 120 chr12 134059122 134059305 -10223184 + L1MC4 LINE L1 7872 8041 -1 332 305 9 33 chr12 134060159 134060297 -10222192 + MIR SINE MIR 22 155 -78 348 286 157 7 chr12 134060643 134060790 -10221699 + MIR SINE MIR 20 188 -74 202 284 45 11 chr12 134062136 134062224 -10220265 - MIR3 SINE MIR -33 175 85 217 280 67 13 chr12 134062636 134062711 -10219778 - MIR SINE MIR -78 130 51 * 274 313 145 33 chr12 134062709 134062923 -10219566 - L2 LINE L2 -2 3270 3033 297 252 7 116 chr12 134063153 134063599 -10218890 + MER5A DNA MER1_type 43 173 -16 406 227 7 107 chr12 134063172 134063249 -10219240 - MER5A DNA MER1_type -48 141 85 1906 163 20 0 chr12 134063249 134063549 -10218940 - AluJo SINE Alu -6 306 1 406 227 7 107 chr12 134063549 134063621 -10218868 - MER5A DNA MER1_type -104 85 7 343 0 0 0 chr12 134064018 134064056 -10218433 + (TTTA)n Simple_repeat Simple_repeat 3 92 0 2114 52 71 0 chr12 134064056 134064326 -10218163 - AluY SINE Alu -1 326 1 1549 165 70 95 chr12 134064740 134065020 -10217469 - MLT1C LTR MaLR 0 467 181 411 21 0 0 chr12 134065020 134065068 -10217421 + (TG)n Simple_repeat Simple_repeat 1 48 0 2025 115 4 0 chr12 134065068 134065347 -10217142 - AluSq SINE Alu -33 280 1 1549 165 70 95 chr12 134065347 134065538 -10216951 - MLT1C LTR MaLR -284 183 7 191 281 110 0 chr12 134065576 134065658 -10216831 + L3 LINE CR1 845 935 -642 229 320 188 11 chr12 134065763 134065944 -10216545 + L3 LINE CR1 1253 1465 -112 298 293 96 11 chr12 134067557 134067735 -10214754 - MIR SINE MIR -45 217 18 297 360 18 18 chr12 134068184 134068348 -10214141 + MIR SINE MIR 30 193 -69 222 37 0 0 chr12 134068478 134068505 -10213984 + (CACCAT)n Simple_repeat Simple_repeat 4 30 0 288 305 97 31 chr12 134068560 134068787 -10213702 - MIR3 SINE MIR -11 251 6 271 250 60 111 chr12 134069057 134069281 -10213208 - MIR SINE MIR -6 256 24 701 207 182 44 chr12 134069700 134069975 -10212514 + MER46C DNA MER2_type 1 313 -25 208 333 61 20 chr12 134070213 134070312 -10212177 - MIR SINE MIR -108 154 52 227 310 14 78 chr12 134071014 134071193 -10211296 + MIR SINE MIR 17 185 -55 450 230 0 0 chr12 134071417 134071565 -10210924 + (TGGA)n Simple_repeat Simple_repeat 3 150 0 214 339 0 0 chr12 134071607 134071672 -10210817 + MIR3 SINE MIR 104 168 -40 1344 197 24 4 chr12 134072541 134072790 -10209699 - L1MB5 LINE L1 -9 6165 5912 334 377 91 30 chr12 134073459 134073756 -10208733 - L2 LINE L2 -15 3257 2943 246 368 26 32 chr12 134074041 134074196 -10208293 - L2 LINE L2 -592 2722 2569 2409 76 3 0 chr12 134075122 134075423 -10207066 - AluSp SINE Alu -11 302 1 216 0 0 0 chr12 134076606 134076630 -10205859 + (TG)n Simple_repeat Simple_repeat 2 25 0 1799 152 4 0 chr12 134077430 134077735 -10204754 - AluSx SINE Alu 0 311 6 231 228 101 51 chr12 134077832 134077911 -10204578 - MLT1K LTR MaLR -4 584 502 694 148 9 17 chr12 134078299 134078414 -10204075 + FRAM SINE Alu 57 170 -6 529 173 39 58 chr12 134078513 134078669 -10203820 + L1MD2 LINE L1 6096 6248 -111 2051 81 3 14 chr12 134078669 134078953 -10203536 + AluSp SINE Alu 17 297 -16 492 274 45 15 chr12 134080835 134081036 -10201453 + MER20 DNA MER1_type 9 215 -4 185 313 0 0 chr12 134083156 134083204 -10199285 - MIR SINE MIR -107 155 108 397 321 0 37 chr12 134084176 134084310 -10198179 + MIR SINE MIR 24 152 -110 214 373 25 19 chr12 134087979 134088137 -10194352 - MIR SINE MIR -24 238 80 297 207 0 0 chr12 134089558 134089640 -10192849 + CT-rich Low_complexity Low_complexity 1 82 0 270 194 0 0 chr12 134089651 134089718 -10192771 + GA-rich Low_complexity Low_complexity 1 67 0 643 268 131 0 chr12 134091317 134091500 -10190989 - MIR SINE MIR -50 212 6 345 183 32 0 chr12 134091718 134091811 -10190678 + LTR16A1 LTR ERVL 270 365 -92 209 375 45 18 chr12 134092943 134093055 -10189434 + MIR SINE MIR 84 198 -64 294 286 15 53 chr12 134093150 134093283 -10189206 - MIR3 SINE MIR -72 136 9 484 312 70 0 chr12 134093676 134093833 -10188656 - MIR SINE MIR 0 262 95 438 194 50 43 chr12 134093972 134094111 -10188378 + LTR33 LTR ERVL 356 495 -26 197 159 0 101 chr12 134094719 134094781 -10187708 - MIR SINE MIR -55 153 112 321 350 81 6 chr12 134095107 134095267 -10187222 + MIR SINE MIR 9 180 -82 372 281 74 0 chr12 134095567 134095702 -10186787 + MIR SINE MIR 78 222 -40 392 218 118 0 chr12 134095733 134095843 -10186646 - MIR SINE MIR -32 230 108 572 228 8 0 chr12 134096820 134096947 -10185542 - MIR SINE MIR -85 177 50 23 0 0 0 chr12 134097504 134097527 -10184962 + GC_rich Low_complexity Low_complexity 1 23 0 376 369 0 13 chr12 134097527 134097684 -10184805 + G-rich Low_complexity Low_complexity 3 157 0 296 354 2 18 chr12 134097723 134098018 -10184471 + G-rich Low_complexity Low_complexity 1 290 0 745 206 14 14 chr12 134098018 134098164 -10184325 - AluJo SINE Alu -89 223 78 1331 103 5 63 chr12 134098164 134098387 -10184102 - AluSc SINE Alu -99 210 1 2522 37 0 0 chr12 134098398 134098696 -10183793 - AluY SINE Alu -13 298 1 240 185 0 0 chr12 134098699 134098753 -10183736 + L1MB7 LINE L1 6112 6165 -19 650 226 15 0 chr12 134098773 134098906 -10183583 - AluSg/x SINE Alu -2 310 176 235 31 0 239 chr12 134098910 134099136 -10183353 + (CCCCAG)n Simple_repeat Simple_repeat 1 172 0 967 148 0 109 chr12 134099166 134099250 -10183239 - AluJo SINE Alu -125 187 95 1211 54 0 32 chr12 134099250 134099435 -10183054 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2435 61 0 3 chr12 134099443 134099753 -10182736 - AluY SINE Alu -1 310 2 967 148 0 109 chr12 134099753 134099869 -10182620 - AluJo SINE Alu -224 88 1 1895 112 18 0 chr12 134099874 134100152 -10182337 - AluSx SINE Alu -15 297 15 2082 101 10 3 chr12 134100157 134100445 -10182044 - AluSx SINE Alu -18 294 5 1970 110 35 0 chr12 134100510 134100792 -10181697 - AluSc SINE Alu -17 292 1 408 291 8 16 chr12 134101248 134101375 -10181114 + MIR3 SINE MIR 78 203 -5 905 144 0 0 chr12 134101670 134101802 -10180687 + FLAM_C SINE Alu 1 132 -1 22 0 0 0 chr12 134101862 134101884 -10180605 + AT_rich Low_complexity Low_complexity 1 22 0 1062 323 142 28 chr12 134102030 134102251 -10180238 - L2 LINE L2 -262 3010 2816 2388 50 0 10 chr12 134102251 134102551 -10179938 + AluY SINE Alu 1 297 -14 1062 323 142 28 chr12 134102551 134103033 -10179456 - L2 LINE L2 -456 2816 2186 2504 48 0 0 chr12 134103033 134103328 -10179161 + AluY SINE Alu 2 296 -15 1062 323 142 28 chr12 134103328 134103492 -10178997 - L2 LINE L2 -1086 2186 2042 3291 183 94 61 chr12 134103519 134104404 -10178085 - MER21A LTR ERV1 -17 914 1 2267 95 20 0 chr12 134104529 134104833 -10177656 + AluSx SINE Alu 1 310 -2 1390 209 74 43 chr12 134104931 134105072 -10177417 + MER58B DNA MER1_type 4 139 -2281 2271 118 0 0 chr12 134105072 134105376 -10177113 + AluSx SINE Alu 1 304 -8 1390 209 74 43 chr12 134105376 134105559 -10176930 + MER58B DNA MER1_type 139 338 -3 2085 120 0 0 chr12 134105927 134106238 -10176251 - AluSx SINE Alu 0 311 1 2130 100 7 3 chr12 134106242 134106533 -10175956 - AluSx SINE Alu -20 292 1 413 298 120 11 chr12 134106583 134106959 -10175530 + L1ME3A LINE L1 5257 5673 -497 378 373 125 0 chr12 134106991 134107123 -10175366 + L1ME3A LINE L1 5738 5845 -319 1950 140 0 36 chr12 134107123 134107262 -10175227 + AluJb SINE Alu 1 143 -169 2071 122 0 7 chr12 134107262 134107556 -10174933 + AluSg SINE Alu 1 292 -18 1950 140 0 36 chr12 134107556 134107724 -10174765 + AluJb SINE Alu 143 297 -15 378 373 125 0 chr12 134107724 134107816 -10174673 + L1ME3A LINE L1 5845 5919 -245 1933 109 42 0 chr12 134107816 134108099 -10174390 + AluSx SINE Alu 1 295 -17 378 373 125 0 chr12 134108099 134108120 -10174369 + L1ME3A LINE L1 5919 6007 -157 1639 82 175 4 chr12 134108347 134108604 -10173885 + AluSg1 SINE Alu 1 301 -8 1984 139 0 37 chr12 134108930 134109254 -10173235 + AluSx SINE Alu 1 312 0 1921 130 10 7 chr12 134109315 134109616 -10172873 + AluSx SINE Alu 1 302 -10 766 187 84 39 chr12 134109645 134109800 -10172689 + FRAM SINE Alu 1 159 -17 2428 61 0 0 chr12 134109804 134110101 -10172388 + AluY SINE Alu 1 297 -14 1905 139 28 0 chr12 134111082 134111370 -10171119 + AluSg SINE Alu 1 296 -14 1979 116 33 7 chr12 134111413 134111714 -10170775 + AluSg SINE Alu 2 310 0 1703 116 4 0 chr12 134111724 134111965 -10170524 + AluSq SINE Alu 42 283 -30 299 164 0 30 chr12 134111967 134112034 -10170455 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 2350 51 10 7 chr12 134112242 134112536 -10169953 - AluY SINE Alu -16 295 1 764 157 16 0 chr12 134112547 134112668 -10169821 - FLAM_A SINE Alu -10 123 1 1964 114 7 7 chr12 134112679 134112969 -10169520 - AluSq SINE Alu -23 290 1 1929 136 3 3 chr12 134113049 134113351 -10169138 - AluSg SINE Alu -8 302 1 1423 153 29 67 chr12 134113358 134113671 -10168818 - AluJb SINE Alu -9 303 3 2265 77 0 10 chr12 134113914 134114211 -10168278 + AluY SINE Alu 1 294 -17 2441 56 0 3 chr12 134114459 134114763 -10167726 + AluY SINE Alu 1 303 -8 516 267 112 57 chr12 134115388 134115808 -10166681 - MER65A LTR ERV1 0 445 3 * 601 231 64 6 chr12 134115808 134115955 -10166534 - MER3 DNA MER1_type -53 156 1 1863 121 3 68 chr12 134117946 134118268 -10164221 - AluSp SINE Alu -12 301 1 262 309 87 50 chr12 134118308 134118629 -10163860 + L2 LINE L2 2901 3299 -14 1862 166 0 3 chr12 134118679 134118992 -10163497 + AluJb SINE Alu 1 312 0 1283 174 0 13 chr12 134119018 134119253 -10163236 + AluJb SINE Alu 1 232 -80 1929 102 3 57 chr12 134119253 134119391 -10163098 + AluSx SINE Alu 1 145 -167 2293 103 0 0 chr12 134119391 134119701 -10162788 + AluSx SINE Alu 3 312 0 1929 102 3 57 chr12 134119701 134119876 -10162613 + AluSx SINE Alu 145 297 -15 1808 149 10 0 chr12 134119878 134120207 -10162282 + AluSx SINE Alu 1 332 0 2153 81 0 7 chr12 134120207 134120516 -10161973 + AluY SINE Alu 1 307 0 2072 113 13 0 chr12 134120528 134120837 -10161652 + AluSq SINE Alu 1 313 0 2207 81 0 26 chr12 134120867 134121174 -10161315 + AluY SINE Alu 1 299 -12 22 56 0 0 chr12 134121538 134121574 -10160915 + AT_rich Low_complexity Low_complexity 1 36 0 1935 111 10 3 chr12 134122300 134122588 -10159901 - AluSc SINE Alu -19 290 1 32 43 0 0 chr12 134122626 134122672 -10159817 + AT_rich Low_complexity Low_complexity 1 46 0 1628 148 0 31 chr12 134124059 134124350 -10158139 + AluJo SINE Alu 1 282 -30 570 118 78 0 chr12 134124373 134124475 -10158014 + FLAM_C SINE Alu 22 131 -12 2058 109 0 0 chr12 134124933 134125240 -10157249 - AluSx SINE Alu 0 307 1 2229 152 81 7 chr12 134125752 134126185 -10156304 + L1MB7 LINE L1 5701 6165 -19 612 172 95 0 chr12 134126272 134126388 -10156101 - FLAM_A SINE Alu -6 127 1 974 122 0 0 chr12 134126695 134126843 -10155646 + FRAM SINE Alu 27 174 -2 782 104 0 75 chr12 134129082 134129216 -10153273 - FLAM_C SINE Alu -5 128 5 1954 107 0 4 chr12 134129534 134129814 -10152675 - AluSx SINE Alu -32 280 2 273 301 224 19 chr12 134130277 134130433 -10152056 - MIR SINE MIR -48 214 27 1721 78 0 33 chr12 134130546 134130790 -10151699 - AluY SINE Alu -75 236 1 1449 194 4 0 chr12 134130929 134131202 -10151287 - L1 LINE L1 -1864 4998 4725 1875 93 73 0 chr12 134131204 134131493 -10150996 - AluSx SINE Alu -2 310 1 458 158 32 0 chr12 134131496 134131591 -10150898 - L1 LINE L1 -3210 3652 3555 1179 113 5 16 chr12 134131601 134131786 -10150703 - AluSq SINE Alu -6 307 125 3618 132 53 36 chr12 134131788 134131873 -10150616 - L1PBa LINE L1 -3303 3559 3477 2412 63 3 0 chr12 134131873 134132175 -10150314 - AluY SINE Alu 0 311 9 3618 132 53 36 chr12 134132175 134132818 -10149671 - L1PBa LINE L1 -3385 3477 2798 2305 93 0 0 chr12 134132818 134133118 -10149371 + AluY SINE Alu 1 300 -11 3618 132 53 36 chr12 134133118 134133575 -10148914 - L1PBa LINE L1 -4064 2798 2350 5190 140 155 61 chr12 134133575 134134982 -10147507 - pTR5 LTR ERV1 -1 2437 743 5430 176 89 14 chr12 134134982 134137010 -10145479 - L1PBa LINE L1 -4516 2347 6 1141 105 6 29 chr12 134137039 134137211 -10145278 - MLT2A1 LTR ERVL -83 361 194 1707 155 17 10 chr12 134137306 134137602 -10144887 + AluJb SINE Alu 1 298 -14 2314 64 0 0 chr12 134137807 134138090 -10144399 + AluSx SINE Alu 11 293 -19 454 69 0 0 chr12 134138232 134138304 -10144185 - AluSg1 SINE Alu 0 312 241 1427 80 11 0 chr12 134138304 134138492 -10143997 - AluSg1 SINE Alu -119 190 1 2152 104 7 0 chr12 134139808 134140105 -10142384 + AluSx SINE Alu 1 299 -13 380 249 228 16 chr12 134140244 134140433 -10142056 - MIR SINE MIR -32 230 2 1624 172 3 23 chr12 134140614 134140776 -10141713 - AluJo SINE Alu -15 297 142 2137 102 10 7 chr12 134140776 134141080 -10141409 - AluSx SINE Alu -7 305 1 1624 172 3 23 chr12 134141080 134141220 -10141269 - AluJo SINE Alu -170 142 1 1579 122 0 0 chr12 134141651 134141880 -10140609 + AluSq SINE Alu 83 311 -2 289 279 0 0 chr12 134141880 134141941 -10140548 + L3b LINE CR1 1520 1580 -3 213 293 0 0 chr12 134142070 134142128 -10140361 + A-rich Low_complexity Low_complexity 3 60 0 2211 60 0 57 chr12 134142381 134142697 -10139792 + AluSq SINE Alu 1 298 -15 741 184 11 75 chr12 134142712 134142886 -10139603 + FRAM SINE Alu 12 174 -2 361 224 17 43 chr12 134142904 134143020 -10139469 + L1ME3A LINE L1 5970 6082 -88 2135 106 10 3 chr12 134143237 134143540 -10138949 + AluSg SINE Alu 1 305 -5 2007 123 3 0 chr12 134144660 134144953 -10137536 + AluSx SINE Alu 1 294 -18 4765 56 8 0 chr12 134145165 134145751 -10136738 + LTR10C LTR ERV1 1 591 0 1511 148 21 136 chr12 134145789 134146119 -10136370 + AluJb SINE Alu 3 294 -8 888 182 31 0 chr12 134147505 134147664 -10134825 + FRAM SINE Alu 1 164 -2 1701 161 0 14 chr12 134147704 134147995 -10134494 + AluJb SINE Alu 1 287 -25 306 107 0 0 chr12 134147996 134148052 -10134437 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1908 97 72 0 chr12 134148089 134148368 -10134121 + AluSx SINE Alu 1 299 -13 282 248 181 34 chr12 134148848 134148912 -10133577 - MER5B DNA MER1_type -1 177 124 2102 107 0 10 chr12 134148912 134149210 -10133279 + AluSg SINE Alu 2 296 -14 1964 121 3 10 chr12 134149212 134149517 -10132972 + AluSg SINE Alu 1 303 -7 282 248 181 34 chr12 134149517 134149598 -10132891 - MER5B DNA MER1_type -54 124 7 1411 139 121 15 chr12 134150649 134150922 -10131567 - AluSg1 SINE Alu -7 302 1 886 122 38 0 chr12 134150922 134151053 -10131436 - AluSq/x SINE Alu -176 136 1 2179 71 0 17 chr12 134151061 134151355 -10131134 - AluY SINE Alu -22 289 1 2050 96 7 0 chr12 134151645 134151953 -10130536 - AluSx SINE Alu 0 311 2 822 140 0 28 chr12 134151957 134152100 -10130389 - AluJo SINE Alu -173 139 1 260 150 0 33 chr12 134152102 134152162 -10130327 - L1M3 LINE L1 -355 5825 5768 287 283 75 9 chr12 134152276 134152382 -10130107 - MER58C DNA MER1_type 0 215 103 1349 198 3 45 chr12 134152523 134152837 -10129652 - AluJb SINE Alu -6 306 6 496 290 19 13 chr12 134152878 134153033 -10129456 - L1MD2 LINE L1 -35 6324 6169 427 222 0 33 chr12 134153082 134153172 -10129317 - FRAM/FAM SINE Alu -98 87 1 287 338 58 7 chr12 134153182 134153336 -10129153 + Charlie8 DNA MER1_type 70 231 -2186 21 0 0 0 chr12 134153564 134153585 -10128904 + AT_rich Low_complexity Low_complexity 1 21 0 2092 88 14 3 chr12 134153971 134154266 -10128223 + AluSx SINE Alu 1 298 -14 2048 119 0 3 chr12 134155208 134155503 -10126986 + AluSp SINE Alu 1 294 -19 2041 127 0 13 chr12 134155513 134155821 -10126668 + AluSx SINE Alu 1 304 -8 766 172 0 8 chr12 134156096 134156230 -10126259 - FLAM_C SINE Alu -10 133 1 389 132 15 0 chr12 134156323 134156391 -10126098 - L1MC4 LINE L1 -455 7587 7519 1922 136 0 0 chr12 134156802 134157064 -10125425 - AluSx SINE Alu -55 257 1 775 165 100 162 chr12 134157919 134158079 -10124410 - AluJo SINE Alu -1 301 169 2160 94 3 17 chr12 134158079 134158366 -10124123 - AluSx SINE Alu -29 283 1 775 165 100 162 chr12 134158366 134158526 -10123963 - AluJo SINE Alu -133 169 1 219 221 39 52 chr12 134160070 134160147 -10122342 + MIR SINE MIR 79 154 -108 440 252 82 44 chr12 134160610 134160769 -10121720 - MIR SINE MIR -50 212 48 373 169 92 31 chr12 134161402 134161532 -10120957 - L1ME4a LINE L1 0 6121 5984 400 207 37 0 chr12 134162923 134163005 -10119484 - MER58B DNA MER1_type -6 335 251 1279 151 151 8 chr12 134163008 134163260 -10119229 - AluJb SINE Alu -12 290 3 324 178 144 0 chr12 134163261 134163351 -10119138 - MER58B DNA MER1_type -151 190 88 2401 82 10 3 chr12 134163355 134163660 -10118829 + AluSx SINE Alu 2 308 -4 193 361 0 0 chr12 134163876 134163937 -10118552 - L3 LINE CR1 -1274 303 243 2290 82 0 23 chr12 134164246 134164549 -10117940 + AluSc SINE Alu 1 296 -13 2551 73 0 9 chr12 134164600 134164915 -10117574 + AluSp SINE Alu 1 312 -1 1274 128 0 0 chr12 134165773 134165945 -10116544 + AluSg/x SINE Alu 130 301 -11 306 302 47 7 chr12 134169559 134169708 -10112781 + MIR3 SINE MIR 53 207 -1 25 75 0 0 chr12 134171497 134171550 -10110939 + GC_rich Low_complexity Low_complexity 1 53 0 38 22 0 0 chr12 134171572 134171617 -10110872 + GC_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr12 134171734 134171773 -10110716 + GC_rich Low_complexity Low_complexity 1 39 0 41 48 0 0 chr12 134171877 134171939 -10110550 + GC_rich Low_complexity Low_complexity 1 62 0 256 200 0 27 chr12 134172049 134172124 -10110365 + (CGG)n Simple_repeat Simple_repeat 2 74 0 43 81 0 0 chr12 134172288 134172387 -10110102 + GC_rich Low_complexity Low_complexity 1 99 0 34 65 0 0 chr12 134172415 134172477 -10110012 + GC_rich Low_complexity Low_complexity 1 62 0 369 214 51 31 chr12 134172850 134172948 -10109541 - L2 LINE L2 -16 3297 3198 1431 194 22 6 chr12 134173434 134173753 -10108736 - MER33 DNA MER1_type 0 324 1 738 173 0 40 chr12 134173923 134174073 -10108416 - FRAM SINE Alu -21 155 12 2081 99 10 10 chr12 134174141 134174433 -10108056 + AluSg SINE Alu 1 292 -18 2226 88 0 0 chr12 134174438 134174723 -10107766 + AluSx SINE Alu 15 299 -13 2150 121 3 3 chr12 134174734 134175047 -10107442 + AluSq SINE Alu 1 313 0 1105 181 0 0 chr12 134175050 134175216 -10107273 + AluJo/FRAM SINE Alu 129 294 -18 471 272 204 17 chr12 134175216 134175532 -10106957 + MLT1G1 LTR MaLR 161 522 -68 345 302 93 34 chr12 134175579 134175784 -10106705 + L1ME4a LINE L1 5646 5862 -300 2569 56 0 7 chr12 134175821 134176126 -10106363 + AluY SINE Alu 1 303 -8 497 279 107 52 chr12 134176751 134177171 -10105318 - MER65A LTR ERV1 0 445 3 * 579 231 64 6 chr12 134177171 134177318 -10105171 - MER3 DNA MER1_type -53 156 1 2025 153 3 3 chr12 134178058 134178353 -10104136 + AluJo SINE Alu 1 295 -17 1286 194 73 67 chr12 134178587 134178959 -10103530 - MLT1A2 LTR MaLR 0 374 1 1858 124 6 94 chr12 134179423 134179762 -10102727 - AluSq SINE Alu -4 309 1 200 143 71 0 chr12 134180328 134180370 -10102119 + T-rich Low_complexity Low_complexity 4 48 0 206 311 22 11 chr12 134180588 134180678 -10101811 + L2 LINE L2 3222 3312 -1 373 169 92 31 chr12 134181129 134181259 -10101230 + L1ME4a LINE L1 5984 6121 0 440 252 82 44 chr12 134181892 134182051 -10100438 + MIR SINE MIR 48 212 -50 219 221 39 52 chr12 134182514 134182591 -10099898 - MIR SINE MIR -108 154 79 565 98 0 0 chr12 134184136 134184218 -10098271 + AluS SINE Alu 2 83 -229 2291 95 3 16 chr12 134184295 134184600 -10097889 + AluSx SINE Alu 1 301 -11 765 310 60 0 chr12 134184613 134184945 -10097544 - L1ME4a LINE L1 -268 5853 5502 2302 106 3 3 chr12 134185003 134185306 -10097183 + AluSg SINE Alu 1 303 -7 1006 141 37 6 chr12 134185358 134185521 -10096968 - AluSc SINE Alu -12 297 130 2052 133 10 7 chr12 134185535 134185829 -10096660 + AluSx SINE Alu 1 295 -17 1721 164 59 11 chr12 134185858 134186145 -10096344 - AluJo SINE Alu -11 301 1 2219 116 0 28 chr12 134186171 134186489 -10096000 + AluSx SINE Alu 1 309 -3 22 56 0 0 chr12 134186599 134186635 -10095854 + AT_rich Low_complexity Low_complexity 1 36 0 1822 164 0 27 chr12 134186679 134186977 -10095512 + AluJo SINE Alu 1 290 -22 1367 109 0 0 chr12 134189227 134189411 -10093078 - AluSq SINE Alu 0 313 130 207 139 0 0 chr12 134189411 134189447 -10093042 + (TG)n Simple_repeat Simple_repeat 2 37 0 1010 113 0 0 chr12 134189456 134189589 -10092900 - AluSq SINE Alu -179 133 1 204 171 0 0 chr12 134190595 134190630 -10091859 + L2 LINE L2 3263 3297 -16 2081 112 17 10 chr12 134190675 134190971 -10091518 - AluSx SINE Alu -14 298 1 202 261 0 0 chr12 134192056 134192102 -10090387 + L2 LINE L2 3155 3200 -72 183 42 0 0 chr12 134193271 134193295 -10089194 + (CCG)n Simple_repeat Simple_repeat 3 26 0 31 76 0 0 chr12 134193342 134193408 -10089081 + GC_rich Low_complexity Low_complexity 1 66 0 26 0 0 0 chr12 134193420 134193446 -10089043 + GC_rich Low_complexity Low_complexity 1 26 0 49 43 0 0 chr12 134193553 134193623 -10088866 + GC_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr12 134193801 134193824 -10088665 + GC_rich Low_complexity Low_complexity 1 23 0 370 337 18 25 chr12 134195242 134195405 -10087084 + MIR3 SINE MIR 16 177 -31 270 285 76 81 chr12 134195573 134195745 -10086744 + L2 LINE L2 3054 3224 -48 181 231 0 0 chr12 134195762 134195801 -10086688 + MIR3 SINE MIR 140 178 -30 298 227 13 27 chr12 134196598 134196673 -10085816 - MIR SINE MIR -99 163 90 822 143 184 0 chr12 134196991 134197138 -10085351 + FRAM SINE Alu 1 172 -4 180 306 194 10 chr12 134197544 134197642 -10084847 - MIR SINE MIR -74 134 19 3346 95 4 14 chr12 134197811 134197825 -10084664 - L1PA13 LINE L1 0 6163 6150 2259 111 3 16 chr12 134197825 134198141 -10084348 - AluSq SINE Alu -1 312 1 3346 95 4 14 chr12 134198141 134198631 -10083858 - L1PA13 LINE L1 -13 6150 5664 447 176 0 0 chr12 134198631 134198705 -10083784 - FLAM SINE Alu -17 126 53 1125 114 18 0 chr12 134199261 134199427 -10083062 - FRAM SINE Alu -10 166 1 828 203 0 12 chr12 134199429 134199592 -10082897 + MER82 DNA MER2_type 24 184 -469 1143 68 0 0 chr12 134199595 134199727 -10082762 + AluSq/x SINE Alu 4 135 -178 2328 112 0 0 chr12 134199727 134200023 -10082466 + AluSc SINE Alu 1 296 -13 2172 226 17 9 chr12 134200023 134200484 -10082005 + MER82 DNA MER2_type 183 647 -6 204 146 24 0 chr12 134201307 134201348 -10081141 + GA-rich Low_complexity Low_complexity 2 43 0 288 180 0 0 chr12 134203172 134203222 -10079267 - MIR SINE MIR -108 154 105 225 260 109 40 chr12 134203236 134203373 -10079116 - MIR3 SINE MIR -67 141 14 2410 80 0 3 chr12 134204937 134205237 -10077252 - AluY SINE Alu -12 299 1 2037 154 7 0 chr12 134205294 134205600 -10076889 - AluJo SINE Alu -4 308 1 1750 164 17 28 chr12 134205606 134205965 -10076524 - L1MB7 LINE L1 -19 6165 5811 227 75 0 0 chr12 134205965 134206005 -10076484 - L1MB3 LINE L1 -12 6171 6132 1998 126 32 3 chr12 134206005 134206290 -10076199 - AluJo SINE Alu -19 293 1 452 196 11 0 chr12 134206291 134206383 -10076106 - L1MB1 LINE L1 -343 5825 5733 2316 122 0 3 chr12 134206536 134206847 -10075642 - AluSx SINE Alu -2 310 1 2203 118 14 0 chr12 134207545 134207842 -10074647 - AluY SINE Alu -10 301 1 2336 95 0 3 chr12 134208144 134208438 -10074051 - AluY SINE Alu -18 293 1 2017 177 9 34 chr12 134208507 134208601 -10073888 + L1MB1 LINE L1 5743 5838 -330 844 156 81 12 chr12 134208601 134208761 -10073728 + FAM SINE Alu 4 174 -1 2017 177 9 34 chr12 134208761 134209102 -10073387 + L1MB1 LINE L1 5838 6167 -1 315 260 236 0 chr12 134209549 134209676 -10072813 - MIR SINE MIR -70 192 36 1944 112 8 0 chr12 134210123 134210382 -10072107 + AluY SINE Alu 30 290 -21 710 100 10 0 chr12 134210477 134210577 -10071912 + AluS SINE Alu 2 102 -211 303 28 0 0 chr12 134210631 134210667 -10071822 + (TG)n Simple_repeat Simple_repeat 2 37 0 373 331 14 14 chr12 134210986 134211128 -10071361 - MIR3 SINE MIR -62 146 5 3176 162 10 62 chr12 134211237 134211927 -10070562 + L1MB4 LINE L1 5493 6146 -34 328 269 200 12 chr12 134212450 134212610 -10069879 + MIR SINE MIR 40 229 -33 1801 221 45 7 chr12 134212917 134213364 -10069125 - MLT1C LTR MaLR 0 467 4 2450 47 0 0 chr12 134213670 134213944 -10068545 - AluY SINE Alu -21 290 17 227 368 44 18 chr12 134214021 134214135 -10068354 + MIR3 SINE MIR 86 202 -6 1451 161 5 5 chr12 134214337 134214561 -10067928 + AluJo SINE Alu 84 307 -5 2605 37 7 7 chr12 134214875 134215171 -10067318 - AluY SINE Alu -15 296 1 730 157 16 0 chr12 134215182 134215303 -10067186 - FLAM_A SINE Alu -10 123 1 2143 110 7 7 chr12 134215314 134215604 -10066885 - AluSq SINE Alu -23 290 1 2116 128 3 7 chr12 134215684 134215989 -10066500 - AluY SINE Alu -7 304 1 2653 55 0 0 chr12 134217421 134217729 -10064760 - AluY SINE Alu -3 308 1 2157 146 0 0 chr12 134217741 134218035 -10064454 - AluSx SINE Alu -18 294 1 246 260 0 40 chr12 134218273 134218373 -10064116 + HAL1 LINE L1 1395 1490 -1017 1755 151 10 17 chr12 134218393 134218684 -10063805 + AluJo SINE Alu 1 289 -23 932 236 28 92 chr12 134218686 134218875 -10063614 + L1MC4 LINE L1 7631 7780 -262 2486 72 7 10 chr12 134218875 134219182 -10063307 + AluSp SINE Alu 1 306 -7 932 236 28 92 chr12 134219182 134219416 -10063073 + L1MC4 LINE L1 7780 8027 -15 2080 159 0 0 chr12 134219610 134219906 -10062583 + AluSx SINE Alu 1 296 -16 2170 115 3 7 chr12 134219908 134220204 -10062285 + AluSq SINE Alu 1 295 -18 450 288 126 29 chr12 134220304 134220755 -10061734 + L1ME3 LINE L1 4484 4978 -1168 2098 129 10 10 chr12 134220775 134221078 -10061411 + AluSq SINE Alu 1 303 -10 457 307 12 11 chr12 134221134 134221327 -10061162 + L1ME3 LINE L1 5441 5634 -532 373 335 66 0 chr12 134221342 134221494 -10060995 + MLT1G1 LTR MaLR 1 162 -433 2132 125 3 3 chr12 134221496 134221809 -10060680 + AluSq SINE Alu 1 313 0 1105 181 0 0 chr12 134221812 134221978 -10060511 + AluJo/FRAM SINE Alu 129 294 -18 471 272 204 17 chr12 134221978 134222294 -10060195 + MLT1G1 LTR MaLR 161 522 -68 345 302 93 34 chr12 134222341 134222546 -10059943 + L1ME3 LINE L1 5646 5862 -300 2473 64 0 7 chr12 134222583 134222881 -10059608 + AluY SINE Alu 1 296 -15 2265 134 0 0 chr12 134223311 134223618 -10058871 + AluSx SINE Alu 1 307 -5 25 31 0 0 chr12 134223621 134223653 -10058836 + AT_rich Low_complexity Low_complexity 1 32 0 1320 179 83 0 chr12 134223784 134224013 -10058476 - AluJb SINE Alu -7 305 58 428 276 109 46 chr12 134224180 134224282 -10058207 - MIR SINE MIR 0 262 168 2406 62 16 44 chr12 134224282 134224602 -10057887 + AluY SINE Alu 1 311 0 428 276 109 46 chr12 134224602 134224738 -10057751 - MIR SINE MIR -94 168 9 2141 127 0 26 chr12 134225435 134225742 -10056747 - AluSx SINE Alu -13 299 1 2191 113 10 3 chr12 134226169 134226461 -10056028 - AluSx SINE Alu -18 294 1 2397 139 30 35 chr12 134226571 134227032 -10055457 - L1MB5 LINE L1 0 6174 5716 930 147 0 43 chr12 134227039 134227202 -10055287 - FRAM SINE Alu -10 156 1 317 283 81 0 chr12 134227526 134227656 -10054833 + MIR SINE MIR 44 184 -62 692 241 0 65 chr12 134227663 134227862 -10054627 + MER3 DNA MER1_type 3 188 -21 234 295 16 0 chr12 134228408 134228469 -10054020 - MIR SINE MIR -55 153 92 238 325 45 13 chr12 134229052 134229206 -10053283 + L2 LINE L2 3015 3173 -140 1426 123 38 88 chr12 134229208 134229258 -10053231 - L1MB3 LINE L1 -2 6181 6130 2164 89 45 0 chr12 134229258 134229549 -10052940 - AluSq SINE Alu -9 304 1 1426 123 38 88 chr12 134229549 134229863 -10052626 - L1MB3 LINE L1 -53 6130 5835 723 141 23 31 chr12 134229893 134230021 -10052468 + FLAM_A SINE Alu 6 132 -10 348 274 137 0 chr12 134230034 134230151 -10052338 + L2 LINE L2 3180 3312 -1 24 0 0 0 chr12 134231694 134231718 -10050771 + AT_rich Low_complexity Low_complexity 1 24 0 1529 201 27 3 chr12 134232175 134232509 -10049980 + L1MB4 LINE L1 5839 6180 0 230 274 195 9 chr12 134232815 134232928 -10049561 + L2 LINE L2 2926 3059 -254 597 320 15 5 chr12 134233069 134233272 -10049217 + MIR SINE MIR 54 258 -4 611 253 14 0 chr12 134233420 134233566 -10048923 - MIR SINE MIR -110 152 5 2122 97 57 17 chr12 134234053 134234351 -10048138 - AluSx SINE Alu -2 310 1 1933 157 41 0 chr12 134234427 134234721 -10047768 - AluJo SINE Alu -6 306 1 751 270 104 29 chr12 134234734 134235296 -10047193 + L2 LINE L2 2626 3303 -10 2114 218 49 32 chr12 134236813 134237185 -10045304 - MLT1F LTR MaLR -6 536 151 1844 125 16 49 chr12 134237185 134237490 -10044999 - AluSx SINE Alu -17 295 1 2114 218 49 32 chr12 134237490 134237644 -10044845 - MLT1F LTR MaLR -391 151 1 702 146 15 44 chr12 134239079 134239216 -10043273 + FLAM_C SINE Alu 1 133 -10 1245 217 35 13 chr12 134239763 134240097 -10042392 + L1MB7 LINE L1 5726 6058 -126 805 101 0 29 chr12 134240140 134240278 -10042211 + L1MB8 LINE L1 6045 6178 0 297 75 0 0 chr12 134240279 134240319 -10042170 + (CA)n Simple_repeat Simple_repeat 2 41 0 208 241 0 0 chr12 134242546 134242600 -10039889 + L2 LINE L2 2920 2973 -340 239 285 16 32 chr12 134243318 134243441 -10039048 + GA-rich Low_complexity Low_complexity 6 126 0 2330 91 0 7 chr12 134243827 134244160 -10038329 - AluSq SINE Alu 0 313 1 256 80 0 40 chr12 134244452 134244502 -10037987 + (CCTG)n Simple_repeat Simple_repeat 2 49 0 1410 151 13 38 chr12 134245240 134245478 -10037011 + AluJo SINE Alu 1 232 -80 23 33 0 0 chr12 134246053 134246083 -10036406 + AT_rich Low_complexity Low_complexity 1 30 0 370 295 36 7 chr12 134246840 134246979 -10035510 - MIR SINE MIR -69 193 51 815 125 28 7 chr12 134247016 134247160 -10035329 + L1MB7 LINE L1 5546 5692 -486 2315 114 0 0 chr12 134247161 134247459 -10035030 + AluSx SINE Alu 1 298 -14 649 145 0 53 chr12 134247461 134247592 -10034897 + L1MB7 LINE L1 5822 5945 -239 197 204 0 23 chr12 134247901 134247945 -10034544 - L2 LINE L2 -20 3293 3251 205 324 44 0 chr12 134248383 134248451 -10034038 + L2 LINE L2 3189 3259 -13 483 158 21 2 chr12 134248598 134248840 -10033649 + AluJo SINE Alu 6 293 -19 1069 150 6 0 chr12 134249748 134249908 -10032581 - FRAM SINE Alu -18 158 1 400 335 42 30 chr12 134250470 134250637 -10031852 + MIR3 SINE MIR 16 184 -24 318 42 0 21 chr12 134250697 134250745 -10031744 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2079 99 0 63 chr12 134250745 134251048 -10031441 - AluSp SINE Alu -1 331 1 812 235 262 23 chr12 134251048 134251117 -10031372 + L2 LINE L2 2517 2568 -745 3285 30 0 104 chr12 134251117 134251617 -10030872 + LTR7 LTR ERV1 1 448 -2 812 235 262 23 chr12 134251617 134252192 -10030297 + L2 LINE L2 2568 3309 -4 266 302 10 10 chr12 134252904 134253000 -10029489 + L2 LINE L2 2618 2713 -601 1043 161 0 0 chr12 134253059 134253221 -10029268 + FRAM SINE Alu 1 162 -4 384 331 8 8 chr12 134254928 134255052 -10027437 + L2 LINE L2 3190 3313 0 249 284 43 35 chr12 134255624 134255740 -10026749 - MIR SINE MIR -62 146 30 345 306 76 0 chr12 134255766 134255910 -10026579 + MIR SINE MIR 32 186 -76 1750 167 14 0 chr12 134256786 134257067 -10025422 - AluJo SINE Alu -23 289 5 2486 64 3 3 chr12 134259356 134259654 -10022835 - AluY SINE Alu -13 298 1 1657 186 7 7 chr12 134260235 134260510 -10021979 + AluJb SINE Alu 1 275 -37 2855 154 14 6 chr12 134260535 134261029 -10021460 - L1MB7 LINE L1 -49 6135 5638 615 295 58 22 chr12 134261420 134261644 -10020845 + MIR SINE MIR 14 245 -17 192 163 0 102 chr12 134261674 134261723 -10020766 + MIR SINE MIR 104 147 -61 363 96 0 0 chr12 134262359 134262411 -10020078 + (CA)n Simple_repeat Simple_repeat 1 52 0 425 250 0 19 chr12 134262903 134263011 -10019478 + MLT1G1 LTR MaLR 108 213 -336 863 179 29 6 chr12 134263012 134263185 -10019304 + L1MB4 LINE L1 5654 5830 -350 1954 170 7 0 chr12 134263185 134263485 -10019004 + AluJb SINE Alu 1 302 -10 682 274 89 33 chr12 134263607 134263877 -10018612 + MLT1G1 LTR MaLR 306 590 -5 554 216 8 37 chr12 134264272 134264406 -10018083 + MIR3 SINE MIR 78 207 -1 943 260 113 18 chr12 134264648 134264975 -10017514 + MLT1J2 LTR MaLR 93 450 0 2102 119 0 7 chr12 134266173 134266476 -10016013 - AluY SINE Alu -10 301 1 210 143 0 0 chr12 134266592 134266627 -10015862 + (T)n Simple_repeat Simple_repeat 1 35 0 225 304 81 25 chr12 134267016 134267177 -10015312 + MIR3 SINE MIR 23 192 -16 708 241 37 0 chr12 134268049 134268211 -10014278 + FRAM SINE Alu 4 171 -5 1681 177 29 23 chr12 134268353 134268663 -10013826 - AluJo SINE Alu 0 312 1 1026 169 0 29 chr12 134268673 134268845 -10013644 - AluJb SINE Alu -12 300 134 566 141 42 9 chr12 134268849 134268972 -10013517 - L1MB3 LINE L1 -45 6126 5979 2361 112 3 0 chr12 134268999 134269304 -10013185 + AluSx SINE Alu 1 306 -6 749 330 21 21 chr12 134269732 134270108 -10012381 + L1MC4a LINE L1 5524 5899 -1909 1896 161 3 10 chr12 134270148 134270447 -10012042 + AluJo SINE Alu 1 297 -15 180 0 0 0 chr12 134270447 134270467 -10012022 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 1930 168 0 3 chr12 134270471 134270774 -10011715 + AluSx SINE Alu 1 302 -10 2285 101 0 7 chr12 134270792 134271099 -10011390 + AluY SINE Alu 1 305 -6 1246 131 0 0 chr12 134271100 134271268 -10011221 + AluSg/x SINE Alu 133 300 -12 1219 71 12 0 chr12 134271391 134271561 -10010928 - L1PA5 LINE L1 0 6154 5983 26 50 0 0 chr12 134271623 134271663 -10010826 + AT_rich Low_complexity Low_complexity 1 40 0 1771 139 4 8 chr12 134271782 134272041 -10010448 - AluJo SINE Alu -17 295 38 2435 73 0 0 chr12 134272381 134272668 -10009821 + AluSg SINE Alu 1 287 -23 407 169 52 0 chr12 134272668 134272745 -10009744 + AluJ/FRAM SINE Alu 216 296 -16 2040 147 3 6 chr12 134272749 134273061 -10009428 - AluSx SINE Alu -1 311 1 2648 68 0 0 chr12 134273436 134273747 -10008742 + AluY SINE Alu 1 311 0 2051 142 0 17 chr12 134273761 134274063 -10008426 + AluSq SINE Alu 1 297 -16 2265 125 0 0 chr12 134274240 134274545 -10007944 + AluSx SINE Alu 1 305 -7 660 189 161 7 chr12 134274588 134274731 -10007758 + AluJb SINE Alu 136 300 -12 2423 81 10 0 chr12 134274919 134275216 -10007273 - AluSc SINE Alu -9 300 1 1568 109 194 4 chr12 134275264 134275511 -10006978 - AluSg SINE Alu -10 300 7 2369 107 3 0 chr12 134275593 134275901 -10006588 - AluSx SINE Alu -3 309 1 978 155 7 0 chr12 134276688 134276836 -10005653 - FRAM SINE Alu -30 146 1 400 335 42 30 chr12 134277398 134277565 -10004924 + MIR3 SINE MIR 16 184 -24 2079 99 0 63 chr12 134277625 134277976 -10004513 - AluSp SINE Alu 0 332 1 812 235 262 23 chr12 134277976 134278045 -10004444 + L2 LINE L2 2517 2568 -745 3285 30 0 104 chr12 134278045 134278545 -10003944 + LTR7 LTR ERV1 1 448 -2 812 235 262 23 chr12 134278545 134279120 -10003369 + L2 LINE L2 2568 3309 -4 266 302 10 10 chr12 134279832 134279928 -10002561 + L2 LINE L2 2618 2713 -601 1043 161 0 0 chr12 134279987 134280149 -10002340 + FRAM SINE Alu 1 162 -4 384 331 8 8 chr12 134281856 134281980 -10000509 + L2 LINE L2 3190 3313 0 249 284 43 35 chr12 134282552 134282668 -9999821 - MIR SINE MIR -62 146 30 345 306 76 0 chr12 134282694 134282838 -9999651 + MIR SINE MIR 32 186 -76 1750 167 14 0 chr12 134283714 134283995 -9998494 - AluJo SINE Alu -23 289 5 2495 63 3 3 chr12 134286284 134286583 -9995906 - AluY SINE Alu -12 299 1 1657 186 7 7 chr12 134287164 134287439 -9995050 + AluJb SINE Alu 1 275 -37 2911 187 15 66 chr12 134287464 134288142 -9994347 - L1MB5 LINE L1 -39 6135 5493 373 331 14 14 chr12 134288251 134288393 -9994096 + MIR3 SINE MIR 5 146 -62 273 29 0 0 chr12 134288712 134288746 -9993743 + (CA)n Simple_repeat Simple_repeat 2 35 0 710 100 10 0 chr12 134288800 134288900 -9993589 - AluS SINE Alu -211 102 2 1944 112 8 0 chr12 134288995 134289254 -9993235 - AluY SINE Alu -21 290 30 315 260 236 0 chr12 134289701 134289828 -9992661 + MIR SINE MIR 36 192 -70 2028 178 7 36 chr12 134290275 134290618 -9991871 - L1MB1 LINE L1 -1 6167 5838 844 170 82 0 chr12 134290618 134290777 -9991712 - FAM SINE Alu 0 175 4 2028 178 7 36 chr12 134290777 134290871 -9991618 - L1MB1 LINE L1 -330 5838 5743 2352 92 0 3 chr12 134290940 134291234 -9991255 + AluY SINE Alu 1 293 -18 2189 121 14 0 chr12 134291536 134291833 -9990656 + AluY SINE Alu 1 301 -10 2332 128 0 0 chr12 134292531 134292843 -9989646 + AluSx SINE Alu 1 312 0 452 196 11 0 chr12 134292993 134293085 -9989404 + L1MB1 LINE L1 5733 5825 -364 2028 123 32 3 chr12 134293086 134293371 -9989118 + AluJo SINE Alu 1 293 -19 227 75 0 0 chr12 134293371 134293411 -9989078 + L1MB3 LINE L1 6132 6171 -12 1739 167 17 28 chr12 134293411 134293770 -9988719 + L1MB7 LINE L1 5811 6165 -19 976 119 0 0 chr12 134293776 134293902 -9988587 + FLAM_C SINE Alu 1 126 -17 1888 160 7 7 chr12 134293911 134294217 -9988272 + AluJo SINE Alu 1 306 -6 2133 114 17 3 chr12 134294407 134294704 -9987785 + AluSx SINE Alu 1 301 -11 1746 122 107 0 chr12 134294775 134295045 -9987444 + AluSq SINE Alu 1 299 -14 1804 155 17 3 chr12 134295501 134295792 -9986697 - AluSx SINE Alu -17 295 1 227 349 18 24 chr12 134295978 134296144 -9986345 + G-rich Low_complexity Low_complexity 6 170 0 1581 140 48 4 chr12 134296240 134296490 -9985999 - AluSq SINE Alu -52 261 1 346 301 186 21 chr12 134296508 134296584 -9985905 - L1ME3A LINE L1 -204 5966 5904 2011 144 0 36 chr12 134296584 134296750 -9985739 - AluJb SINE Alu -17 295 125 2176 122 0 7 chr12 134296750 134297044 -9985445 - AluSg SINE Alu -18 292 1 2011 144 0 36 chr12 134297044 134297096 -9985393 - AluJb SINE Alu -186 126 2 582 174 0 0 chr12 134297096 134297182 -9985307 - AluJ/FLAM SINE Alu -225 87 2 346 301 186 21 chr12 134297183 134297320 -9985169 - L1ME3A LINE L1 -266 5904 5729 491 267 130 10 chr12 134297347 134297723 -9984766 - L1ME3A LINE L1 -497 5673 5257 2216 105 7 3 chr12 134297773 134298067 -9984422 + AluSx SINE Alu 1 295 -17 1366 186 75 70 chr12 134298302 134298674 -9983815 - MLT1A2 LTR MaLR 0 374 1 1706 124 6 92 chr12 134299138 134299476 -9983013 - AluSq SINE Alu -4 309 1 200 143 71 0 chr12 134300042 134300084 -9982405 + T-rich Low_complexity Low_complexity 4 48 0 222 311 22 11 chr12 134300302 134300392 -9982097 + L2 LINE L2 3222 3312 -1 232 197 66 0 chr12 134300840 134300901 -9981588 + L1ME4a LINE L1 5984 6048 -73 516 118 0 13 chr12 134301182 134301258 -9981231 + AluSg/x SINE Alu 174 248 -62 978 178 30 0 chr12 134301260 134301462 -9981027 + AluJo SINE Alu 87 294 -18 2103 113 3 0 chr12 134302366 134302658 -9979831 + AluSp SINE Alu 3 295 -18 1652 156 0 4 chr12 134303894 134304164 -9978325 + AluSx SINE Alu 1 269 -43 2089 96 3 13 chr12 134304340 134304643 -9977846 + AluSg SINE Alu 3 302 -8 884 94 0 0 chr12 134304742 134304859 -9977630 - AluSg SINE Alu -183 127 11 1245 87 16 11 chr12 134305508 134305691 -9976798 - AluSp SINE Alu -129 184 1 1280 88 0 0 chr12 134306114 134306284 -9976205 - AluSc SINE Alu -8 301 132 2442 65 0 0 chr12 134306284 134306591 -9975898 - AluY SINE Alu -4 307 1 687 136 8 40 chr12 134308091 134308200 -9974289 + FLAM_A SINE Alu 20 126 -185 2050 112 0 26 chr12 134308200 134308513 -9973976 + AluSq SINE Alu 1 305 -8 687 136 8 40 chr12 134308513 134308528 -9973961 + FLAM_A SINE Alu 126 140 -171 766 176 0 40 chr12 134308549 134308697 -9973792 + FLAM_C SINE Alu 2 143 0 1874 119 73 3 chr12 134308826 134309112 -9973377 + AluSx SINE Alu 1 306 -6 1527 82 10 5 chr12 134309806 134310012 -9972477 + AluSq SINE Alu 1 207 -106 1085 68 7 0 chr12 134310014 134310160 -9972329 + AluSp/q SINE Alu 161 307 -6 1595 189 35 32 chr12 134310177 134310516 -9971973 + MER58B DNA MER1_type 2 341 0 2048 134 0 3 chr12 134310536 134310849 -9971640 + AluSx SINE Alu 1 312 0 2224 72 13 19 chr12 134310857 134311164 -9971325 + AluY SINE Alu 1 305 -6 1213 172 9 0 chr12 134311192 134311407 -9971082 + AluJo SINE Alu 1 217 -95 1710 152 7 7 chr12 134311656 134311953 -9970536 + AluJb SINE Alu 1 297 -15 276 231 115 0 chr12 134312045 134312123 -9970366 - Charlie7 DNA MER1_type -2518 94 8 648 220 0 0 chr12 134312184 134312302 -9970187 + 5S rRNA rRNA 2 119 -2 1846 132 7 13 chr12 134312360 134312670 -9969819 + AluSx SINE Alu 1 308 -4 561 174 9 52 chr12 134312794 134312909 -9969580 - FLAM_C SINE Alu -32 111 2 1862 114 4 18 chr12 134312986 134313259 -9969230 - AluSx SINE Alu -43 269 1 21 57 0 0 chr12 134313448 134313483 -9969006 + AT_rich Low_complexity Low_complexity 1 35 0 2244 88 10 7 chr12 134314079 134314387 -9968102 + AluSx SINE Alu 1 309 -3 2014 103 28 3 chr12 134314390 134314681 -9967808 + AluSp SINE Alu 1 298 -15 581 158 142 24 chr12 134314719 134314846 -9967643 - FRAM SINE Alu -6 170 29 1392 138 18 0 chr12 134315343 134315561 -9966928 + AluSq SINE Alu 25 246 -67 1635 100 0 0 chr12 134315697 134315917 -9966572 - AluSg SINE Alu -90 220 1 2306 65 0 3 chr12 134315927 134316221 -9966268 - AluY SINE Alu -18 293 1 599 194 0 0 chr12 134316264 134316362 -9966127 + FLAM_C SINE Alu 29 126 -17 1440 144 0 65 chr12 134316769 134316889 -9965600 - AluSx SINE Alu -56 256 130 2195 108 0 0 chr12 134316889 134317196 -9965293 - AluY SINE Alu -4 307 1 2200 79 0 0 chr12 134317200 134317509 -9964980 - AluY SINE Alu 0 309 1 1440 144 0 65 chr12 134317509 134317645 -9964844 - AluSx SINE Alu -185 127 11 761 171 0 0 chr12 134317664 134317787 -9964702 - FLAM_C SINE Alu -9 124 2 1559 128 62 18 chr12 134318041 134318339 -9964150 + AluSq SINE Alu 1 310 0 198 0 0 0 chr12 134319173 134319195 -9963294 + (T)n Simple_repeat Simple_repeat 1 22 0 1822 89 118 7 chr12 134319243 134319513 -9962976 - AluSx SINE Alu -7 305 6 1466 101 0 0 chr12 134319625 134319823 -9962666 + AluSc SINE Alu 106 303 -6 210 154 0 0 chr12 134320730 134320769 -9961720 + (TG)n Simple_repeat Simple_repeat 2 40 0 423 119 0 0 chr12 134321677 134321744 -9960745 + (T)n Simple_repeat Simple_repeat 1 67 0 871 113 0 14 chr12 134323016 134323158 -9959331 + AluJb SINE Alu 1 140 -172 814 122 0 0 chr12 134324601 134324716 -9957773 - AluSq SINE Alu -65 248 134 2179 96 3 0 chr12 134324717 134325009 -9957480 - AluSc SINE Alu -16 293 1 1464 138 171 0 chr12 134325032 134325278 -9957211 - AluSx SINE Alu -14 288 1 867 132 0 22 chr12 134325289 134325425 -9957064 - FLAM_C SINE Alu 0 133 1 2006 109 10 0 chr12 134326612 134326905 -9955584 - AluSp SINE Alu -17 296 1 1741 151 0 33 chr12 134326907 134327074 -9955415 - AluJo SINE Alu -18 294 140 1978 149 3 0 chr12 134327074 134327383 -9955106 - AluSx SINE Alu -2 310 1 1741 151 0 33 chr12 134327383 134327519 -9954970 - AluJo SINE Alu -172 140 1 794 258 105 73 chr12 134327846 134328245 -9954244 + MLT1J LTR MaLR 97 508 -3 838 262 33 0 chr12 134328352 134328562 -9953927 - AluJo SINE Alu -24 288 72 1758 160 3 0 chr12 134329364 134329657 -9952832 + AluSx SINE Alu 3 296 -16 426 198 38 19 chr12 134329663 134329769 -9952720 - L1MC5 LINE L1 -54 7907 7800 2193 102 0 7 chr12 134329854 134330159 -9952330 + AluSc SINE Alu 1 303 -6 601 206 231 19 chr12 134330160 134330277 -9952212 - MER33 DNA MER1_type -2282 303 212 1792 157 3 0 chr12 134330277 134330570 -9951919 - AluSx SINE Alu -18 294 1 601 206 231 19 chr12 134330570 134330717 -9951772 - MER33 DNA MER1_type -2373 212 1 407 267 193 0 chr12 134330717 134330867 -9951622 + MER5A DNA MER1_type 11 189 0 801 153 0 0 chr12 134330949 134331067 -9951422 - AluJb SINE Alu -193 119 2 2143 193 41 13 chr12 134331105 134331572 -9950917 + L1 LINE L1 2226 2705 -3441 180 0 0 0 chr12 134332065 134332085 -9950404 + (T)n Simple_repeat Simple_repeat 1 20 0 2347 54 0 35 chr12 134332717 134333031 -9949458 + AluY SINE Alu 1 303 -8 1262 124 0 5 chr12 134334295 134334525 -9947964 + AluY SINE Alu 89 317 0 2101 103 7 0 chr12 134334545 134334835 -9947654 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr12 134334860 134334882 -9947607 + AT_rich Low_complexity Low_complexity 1 22 0 1134 142 22 0 chr12 134334914 134335097 -9947392 + AluJo SINE Alu 120 306 -6 2371 153 41 41 chr12 134335097 134335580 -9946909 + L1MB7 LINE L1 5557 6039 -145 29 0 0 0 chr12 134335580 134335609 -9946880 + AT_rich Low_complexity Low_complexity 1 29 0 216 155 52 17 chr12 134336261 134336319 -9946170 + T-rich Low_complexity Low_complexity 6 65 0 1558 173 3 10 chr12 134337241 134337548 -9944941 + AluJb SINE Alu 1 305 -7 1964 122 7 10 chr12 134338432 134338727 -9943762 + AluSg SINE Alu 3 296 -14 1198 155 5 27 chr12 134338940 134339159 -9943330 - AluSg/x SINE Alu -13 297 84 35 41 0 0 chr12 134339375 134339424 -9943065 + GC_rich Low_complexity Low_complexity 1 49 0 891 185 0 17 chr12 134339765 134339938 -9942551 + AluSg/x SINE Alu 141 310 0 2169 57 50 0 chr12 134339940 134340219 -9942270 + AluSc SINE Alu 3 295 -14 964 136 95 180 chr12 134340282 134340598 -9941891 - AluJo SINE Alu -11 291 3 207 88 0 0 chr12 134340600 134340634 -9941855 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 26 0 0 0 chr12 134341180 134341206 -9941283 + AT_rich Low_complexity Low_complexity 1 26 0 187 87 0 0 chr12 134342699 134342722 -9939767 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1279 158 16 35 chr12 134342734 134342988 -9939501 - AluJb SINE Alu -44 268 20 211 255 0 0 chr12 134343065 134343112 -9939377 + A-rich Low_complexity Low_complexity 1 47 0 245 230 11 23 chr12 134343123 134343210 -9939279 + C-rich Low_complexity Low_complexity 4 89 0 255 274 17 29 chr12 134343274 134343449 -9939040 + (CACCC)n Simple_repeat Simple_repeat 5 177 0 268 175 22 71 chr12 134343477 134343660 -9938829 + C-rich Low_complexity Low_complexity 1 174 0 212 232 72 14 chr12 134343665 134343734 -9938755 + (CCCCAA)n Simple_repeat Simple_repeat 5 77 0 200 327 0 0 chr12 134343742 134343797 -9938692 + C-rich Low_complexity Low_complexity 6 60 0 273 241 212 25 chr12 134544089 134544334 -9738155 + L1MC5 LINE L1 7584 7874 -87 2241 89 26 0 chr12 134544594 134544897 -9737592 + AluSp SINE Alu 3 313 0 2022 148 0 28 chr12 134544983 134545300 -9737189 - AluSx SINE Alu -4 308 1 686 160 80 0 chr12 134545300 134545425 -9737064 - AluJo SINE Alu -177 135 1 2520 63 0 10 chr12 134545436 134545737 -9736752 - AluY SINE Alu -13 298 1 717 269 119 32 chr12 134545785 134546196 -9736293 + LTR33 LTR ERVL 3 449 -72 424 261 142 0 chr12 134546196 134546330 -9736159 - MER63A DNA MER1_type 0 210 58 1550 154 0 53 chr12 134546479 134546745 -9735744 - AluJo SINE Alu -60 252 1 2066 134 37 0 chr12 134546754 134547052 -9735437 - AluSx SINE Alu -3 309 1 328 237 141 39 chr12 134547086 134547242 -9735247 - MIR SINE MIR -1 261 90 864 140 0 15 chr12 134547300 134547436 -9735053 - AluJo SINE Alu -178 134 1 238 197 56 14 chr12 134547459 134547530 -9734959 - MIR SINE MIR -21 241 168 2337 86 3 3 chr12 134547572 134547874 -9734615 + AluSq SINE Alu 1 302 -11 955 141 0 0 chr12 134547898 134548040 -9734449 + MER6 DNA MER2_type 5 146 -719 1833 163 11 0 chr12 134548040 134548354 -9734135 - AluJo SINE Alu 0 322 6 1215 109 10 5 chr12 134548356 134548558 -9733931 + MER6 DNA MER2_type 663 865 0 21 0 0 0 chr12 134548710 134548731 -9733758 + AT_rich Low_complexity Low_complexity 1 21 0 782 231 6 16 chr12 134548985 134549167 -9733322 + MIR SINE MIR 80 259 -3 300 272 120 101 chr12 134549311 134549491 -9732998 + L2 LINE L2 2507 2682 -632 2147 155 0 0 chr12 134549491 134549801 -9732688 - AluSx SINE Alu -2 310 1 300 272 120 101 chr12 134549801 134549988 -9732501 + L2 LINE L2 2682 2881 -433 2001 153 3 13 chr12 134550019 134550326 -9732163 - AluJb SINE Alu -6 306 3 1058 147 32 0 chr12 134550327 134550483 -9732006 - FRAM SINE Alu -16 160 1 5241 109 29 5 chr12 134550821 134551582 -9730907 + LTR17 LTR ERV1 2 780 0 4837 87 20 25 chr12 134551582 134552275 -9730214 + HERV17 LTR ERV1 2 691 -7935 2596 75 0 0 chr12 134552711 134553017 -9729472 + AluSx SINE Alu 2 307 -5 3316 60 0 36 chr12 134553201 134553650 -9728839 + HERV17 LTR ERV1 1537 1969 -6657 * 41476 56 4 9 chr12 134553639 134554634 -9727855 + HERV17 LTR ERV1 2289 3287 -5339 2440 77 0 0 chr12 134554634 134554931 -9727558 + AluY SINE Alu 1 297 -14 41476 56 4 9 chr12 134554931 134558277 -9724212 + HERV17 LTR ERV1 3287 6602 -2024 2309 103 0 7 chr12 134558277 134558587 -9723902 + AluSx SINE Alu 1 308 -4 41476 56 4 9 chr12 134558587 134559530 -9722959 + HERV17 LTR ERV1 6602 7548 -1078 2300 65 0 0 chr12 134559520 134559812 -9722677 + HERV17 LTR ERV1 8335 8626 0 * 5209 83 1 38 chr12 134559812 134560138 -9722351 + LTR17 LTR ERV1 1 337 -443 4764 25 0 0 chr12 134560138 134560708 -9721781 - L1PA3 LINE L1 -1 6154 5585 5209 83 1 38 chr12 134560708 134561140 -9721349 + LTR17 LTR ERV1 337 731 -49 251 175 0 0 chr12 134561224 134561281 -9721208 + L1MC5 LINE L1 7724 7780 -181 2092 122 4 0 chr12 134561288 134561567 -9720922 + AluSx SINE Alu 1 280 -32 237 65 0 0 chr12 134561568 134561599 -9720890 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 810 139 146 32 chr12 134561687 134561845 -9720644 + FRAM SINE Alu 1 174 -2 2213 131 0 3 chr12 134562206 134562519 -9719970 - AluSx SINE Alu 0 312 1 2016 123 14 14 chr12 134562522 134562849 -9719640 - AluJo SINE Alu 0 312 1 2362 105 3 0 chr12 134563108 134563412 -9719077 - AluSx SINE Alu -7 305 1 954 138 0 14 chr12 134563423 134563561 -9718928 - AluJo SINE Alu -176 136 1 1660 158 37 30 chr12 134563897 134564194 -9718295 - AluJb SINE Alu -13 299 1 1118 164 18 14 chr12 134564373 134564593 -9717896 + AluSc SINE Alu 1 221 -88 290 119 0 0 chr12 134564747 134564789 -9717700 - AluSq/x SINE Alu -176 127 86 1075 178 46 41 chr12 134564789 134565008 -9717481 - AluJo SINE Alu -92 220 1 1967 56 0 4 chr12 134565019 134565251 -9717238 - AluY SINE Alu -13 298 68 2572 137 5 36 chr12 134565251 134565690 -9716799 - MER65A LTR ERV1 -20 425 1 309 148 19 0 chr12 134565691 134565745 -9716744 - L1ME LINE L1 -592 5578 5524 2254 107 0 0 chr12 134565788 134566079 -9716410 + AluSx SINE Alu 1 291 -21 2552 57 0 0 chr12 134566098 134566395 -9716094 + AluY SINE Alu 2 298 -13 416 282 31 115 chr12 134566564 134566714 -9715775 + L1ME3 LINE L1 5675 5836 -285 1732 135 4 11 chr12 134566714 134566800 -9715689 + AluSq SINE Alu 49 134 -179 2129 83 75 0 chr12 134566800 134567078 -9715411 + AluSx SINE Alu 1 299 -13 1732 135 4 11 chr12 134567078 134567257 -9715232 + AluSq SINE Alu 134 312 -1 416 282 31 115 chr12 134567257 134567548 -9714941 + L1ME3 LINE L1 5836 6073 -48 2026 122 0 0 chr12 134567556 134567819 -9714670 - AluJb SINE Alu -44 268 6 1100 149 0 0 chr12 134567819 134567980 -9714509 - FRAM SINE Alu -16 160 1 2370 90 0 7 chr12 134568514 134568815 -9713674 - AluSc SINE Alu -10 299 1 1636 142 48 34 chr12 134568994 134569289 -9713200 + AluSx SINE Alu 1 299 -13 347 151 0 0 chr12 134569625 134569678 -9712811 + Alu SINE Alu 1 53 -248 648 233 79 61 chr12 134569802 134569858 -9712631 - MLT1C LTR MaLR -8 459 405 1801 151 0 57 chr12 134569858 134569991 -9712498 + AluJb SINE Alu 1 140 -172 2131 143 0 3 chr12 134569991 134570298 -9712191 + AluJb SINE Alu 1 306 -6 1801 151 0 57 chr12 134570298 134570505 -9711984 + AluJb SINE Alu 140 312 0 648 233 79 61 chr12 134570505 134570676 -9711813 - MLT1C LTR MaLR -62 405 228 1418 158 5 0 chr12 134570677 134570892 -9711597 - AluJo SINE Alu -10 302 87 535 208 26 32 chr12 134570896 134571050 -9711439 - MLT1C LTR MaLR -272 233 81 2489 76 0 3 chr12 134571074 134571375 -9711114 - AluSc SINE Alu -9 300 1 201 217 150 0 chr12 134571480 134571540 -9710949 - MIR SINE MIR -146 116 48 2279 115 0 13 chr12 134571861 134572175 -9710314 - AluSx SINE Alu -2 310 1 1497 138 55 103 chr12 134572175 134572486 -9710003 - AluJo SINE Alu -16 296 1 1385 131 5 0 chr12 134572703 134572902 -9709587 + AluSq SINE Alu 114 313 0 2268 114 0 7 chr12 134573083 134573382 -9709107 + AluY SINE Alu 1 297 -14 1926 121 62 14 chr12 134573392 134573681 -9708808 + AluSx SINE Alu 1 303 -9 1009 128 0 47 chr12 134573729 134573877 -9708612 + AluSq/x SINE Alu 3 143 -170 2107 105 4 7 chr12 134574020 134574297 -9708192 - AluSc SINE Alu -33 276 1 545 262 148 55 chr12 134574316 134574572 -9707917 - MLT1K LTR MaLR -260 328 49 1018 169 0 45 chr12 134574800 134575001 -9707488 + AluSc SINE Alu 118 309 0 2216 125 3 0 chr12 134575015 134575319 -9707170 + AluSx SINE Alu 1 305 -7 639 247 57 0 chr12 134575412 134575570 -9706919 + MIR SINE MIR 16 182 -80 402 189 33 57 chr12 134575570 134575632 -9706857 - Charlie1 DNA MER1_type 0 2761 2701 1969 136 7 0 chr12 134575632 134575955 -9706534 - AluSx SINE Alu 0 325 1 402 189 33 57 chr12 134575955 134576013 -9706476 - Charlie1 DNA MER1_type -60 2701 2643 865 137 43 7 chr12 134576013 134576152 -9706337 + FRAM SINE Alu 23 166 -10 363 78 0 0 chr12 134576152 134576203 -9706286 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 666 175 0 0 chr12 134576308 134576428 -9706061 + AluJb SINE Alu 178 297 -15 2383 74 0 0 chr12 134576588 134576873 -9705616 + AluY SINE Alu 12 296 -15 1518 158 3 49 chr12 134576926 134577210 -9705279 + AluJb SINE Alu 23 293 -19 1116 79 14 0 chr12 134577213 134577352 -9705137 + AluSc SINE Alu 1 141 -168 986 100 33 0 chr12 134577600 134577750 -9704739 + AluSg/x SINE Alu 144 298 -14 30 0 0 0 chr12 134577888 134577918 -9704571 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 134578007 134578028 -9704461 + GC_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr12 134578359 134578386 -9704103 + AT_rich Low_complexity Low_complexity 1 27 0 29 0 0 0 chr12 134578501 134578530 -9703959 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr12 134578658 134578684 -9703805 + (A)n Simple_repeat Simple_repeat 1 26 0 2554 74 0 0 chr12 134578684 134578994 -9703495 + AluY SINE Alu 1 310 -1 29 28 0 0 chr12 134579250 134579286 -9703203 + AT_rich Low_complexity Low_complexity 1 36 0 1819 128 0 4 chr12 134579421 134579678 -9702811 + AluSx SINE Alu 20 275 -37 27 0 0 0 chr12 134579693 134579720 -9702769 + AT_rich Low_complexity Low_complexity 1 27 0 319 283 47 19 chr12 134579720 134579826 -9702663 + L1MC3 LINE L1 6937 7045 -740 1119 175 0 10 chr12 134579828 134580022 -9702467 - AluSx SINE Alu -21 289 98 806 89 0 0 chr12 134580734 134580835 -9701654 - AluSx SINE Alu -210 102 2 2009 107 40 20 chr12 134580967 134581265 -9701224 + AluSg SINE Alu 1 304 -6 1778 177 3 7 chr12 134581278 134581577 -9700912 + AluJb SINE Alu 1 298 -14 188 100 25 0 chr12 134582692 134582732 -9699757 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 225 108 0 0 chr12 134582789 134582826 -9699663 + (T)n Simple_repeat Simple_repeat 1 37 0 350 196 173 77 chr12 134583669 134583773 -9698716 + MIR SINE MIR 73 200 -62 1742 136 66 25 chr12 134583773 134583937 -9698552 - AluSx SINE Alu -14 298 115 2395 90 13 6 chr12 134583937 134584248 -9698241 - AluSq SINE Alu 0 313 1 1742 136 66 25 chr12 134584248 134584369 -9698120 - AluSx SINE Alu -197 115 1 350 196 173 77 chr12 134584369 134584432 -9698057 + MIR SINE MIR 200 256 -6 249 304 83 9 chr12 134584570 134584710 -9697779 + MIR3 SINE MIR 2 150 -87 703 231 54 54 chr12 134584786 134585007 -9697482 + MIR SINE MIR 42 262 0 741 157 0 30 chr12 134585115 134585249 -9697240 - FLAM_C SINE Alu -13 130 1 2230 93 40 13 chr12 134585251 134585551 -9696938 - AluSg SINE Alu -2 308 1 553 143 159 8 chr12 134585597 134585723 -9696766 + AluSg/x SINE Alu 157 301 -11 1771 101 120 0 chr12 134585778 134586045 -9696444 - AluSg SINE Alu 0 300 2 2047 140 3 0 chr12 134586378 134586663 -9695826 - AluJo SINE Alu -26 286 1 343 362 131 22 chr12 134586773 134587002 -9695487 + MIR SINE MIR 9 262 0 2169 101 4 0 chr12 134587139 134587416 -9695073 + AluSg SINE Alu 1 278 -32 255 143 0 0 chr12 134587428 134587470 -9695019 + AluSg/x SINE Alu 126 167 -133 4690 111 108 125 chr12 134587473 134588901 -9693588 - pTR5 LTR ERV1 0 2438 743 2154 80 0 11 chr12 134588901 134589175 -9693314 + AluY SINE Alu 31 301 -10 519 216 22 14 chr12 134589356 134589495 -9692994 + MER104 DNA Tc2 4 143 -37 1935 147 3 19 chr12 134590259 134590571 -9691918 + AluJb SINE Alu 1 307 -5 2493 67 0 3 chr12 134590582 134590881 -9691608 + AluY SINE Alu 3 300 -11 222 91 0 0 chr12 134590883 134590916 -9691573 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2041 160 0 0 chr12 134591239 134591546 -9690943 + AluSx SINE Alu 1 307 -5 916 287 64 75 chr12 134591558 134591809 -9690680 + L2 LINE L2 2639 2891 -422 2312 94 3 3 chr12 134591809 134592107 -9690382 - AluSp SINE Alu -15 298 1 916 287 64 75 chr12 134592107 134592170 -9690319 + L2 LINE L2 2891 2953 -360 1530 156 73 45 chr12 134592170 134592458 -9690031 - AluJo SINE Alu -16 296 1 916 287 64 75 chr12 134592458 134592834 -9689655 + L2 LINE L2 2953 3312 -1 1720 105 161 4 chr12 134592972 134593239 -9689250 - AluSg1 SINE Alu 0 309 1 2396 65 0 42 chr12 134593239 134593545 -9688944 - AluY SINE Alu -17 294 1 1099 137 69 0 chr12 134593822 134593997 -9688492 - AluSg/x SINE Alu -6 304 118 849 122 0 0 chr12 134594006 134594129 -9688360 - AluSg/x SINE Alu -2 310 188 1661 92 0 48 chr12 134594129 134594241 -9688248 - AluSc SINE Alu -92 217 120 2448 79 0 3 chr12 134594241 134594546 -9687943 - AluY SINE Alu -6 305 2 1661 92 0 48 chr12 134594546 134594607 -9687882 - AluSc SINE Alu -189 120 1 381 111 0 0 chr12 134594607 134594661 -9687828 - Alu SINE Alu -248 54 1 2406 81 3 0 chr12 134594663 134594959 -9687530 - AluSq SINE Alu -16 297 1 341 294 9 28 chr12 134595077 134595186 -9687303 + MIR SINE MIR 35 141 -67 225 196 0 89 chr12 134595209 134595265 -9687224 + L2 LINE L2 3214 3264 -8 1997 133 27 7 chr12 134595266 134595559 -9686930 - AluSx SINE Alu -13 299 1 2405 89 20 0 chr12 134595887 134596190 -9686299 - AluSx SINE Alu -3 309 1 1174 142 0 47 chr12 134596214 134596404 -9686085 - AluJo SINE Alu -1 311 131 2246 107 17 0 chr12 134596463 134596754 -9685735 + AluSg SINE Alu 1 296 -14 602 211 0 31 chr12 134596760 134596888 -9685601 - AluJo SINE Alu -187 125 2 713 233 106 6 chr12 134596922 134597102 -9685387 + MIR SINE MIR 35 232 -30 2206 118 3 0 chr12 134597426 134597723 -9684766 - AluSx SINE Alu -14 298 1 239 198 12 62 chr12 134597844 134597878 -9684611 - L1M4 LINE L1 -1947 4199 4165 2501 71 0 0 chr12 134597878 134598175 -9684314 - AluY SINE Alu -14 297 1 239 198 12 62 chr12 134598175 134598221 -9684268 - L1M4 LINE L1 -1981 4165 4123 356 289 94 0 chr12 134598230 134598358 -9684131 + MIR SINE MIR 74 213 -49 385 254 10 78 chr12 134598359 134598552 -9683937 - L2 LINE L2 -7 3306 3127 2434 94 3 0 chr12 134598554 134598853 -9683636 - AluSx SINE Alu -12 300 1 434 217 11 0 chr12 134598854 134598946 -9683543 + MLT1K LTR MaLR 492 584 -4 2336 81 19 16 chr12 134599087 134599397 -9683092 - AluY SINE Alu 0 311 1 2299 115 0 7 chr12 134599397 134599701 -9682788 - AluSq SINE Alu -11 302 1 2338 94 7 7 chr12 134599877 134600174 -9682315 - AluSx SINE Alu -15 297 1 31 54 0 33 chr12 134600193 134600208 -9682281 + AT_rich Low_complexity Low_complexity 1 15 -74 698 195 0 0 chr12 134600208 134600331 -9682158 - FLAM_C SINE Alu -10 123 1 31 54 0 33 chr12 134600331 134600374 -9682115 + AT_rich Low_complexity Low_complexity 15 57 -32 2047 133 3 13 chr12 134600374 134600674 -9681815 - AluSx SINE Alu -15 297 1 31 54 0 33 chr12 134600674 134600706 -9681783 + AT_rich Low_complexity Low_complexity 57 89 0 2477 65 7 7 chr12 134600815 134601124 -9681365 - AluY SINE Alu -2 309 1 932 177 19 0 chr12 134601144 134601302 -9681187 - FAM SINE Alu -7 42 1 1059 278 50 32 chr12 134601376 134601754 -9680735 - MLT1G1 LTR MaLR -210 385 1 2142 122 3 10 chr12 134601771 134602067 -9680422 - AluSx SINE Alu -18 294 1 2518 69 0 0 chr12 134602354 134602658 -9679831 - AluY SINE Alu -7 304 1 427 312 113 22 chr12 134602872 134603103 -9679386 + MIR SINE MIR 3 254 -8 236 232 89 0 chr12 134603148 134603204 -9679285 - MER103 DNA DNA -104 62 2 702 127 0 17 chr12 134603367 134603485 -9679004 - FLAM_C SINE Alu 0 143 28 2297 93 6 10 chr12 134603504 134603815 -9678674 - AluSg SINE Alu 0 310 1 186 103 0 0 chr12 134603817 134603846 -9678643 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1313 131 0 0 chr12 134603846 134604021 -9678468 - AluSg/x SINE Alu -29 281 107 1774 148 58 4 chr12 134604055 134604333 -9678156 + AluJo SINE Alu 1 293 -19 2536 74 0 0 chr12 134604350 134604660 -9677829 + AluY SINE Alu 1 310 -1 1980 99 51 0 chr12 134604927 134605221 -9677268 - AluSq SINE Alu 0 308 1 661 133 9 0 chr12 134605222 134605327 -9677162 - AluSq/x SINE Alu -167 145 40 2095 188 25 9 chr12 134605328 134605764 -9676725 + L1MB3 LINE L1 5700 6142 -41 2476 62 0 10 chr12 134605764 134606068 -9676421 + AluY SINE Alu 1 301 -10 2267 106 0 0 chr12 134606095 134606388 -9676101 + AluSx SINE Alu 1 293 -19 2004 127 3 0 chr12 134606395 134606679 -9675810 + AluSq SINE Alu 14 298 -15 252 184 20 0 chr12 134606702 134606751 -9675738 + AluJ/FLAM SINE Alu 12 61 -241 322 320 78 39 chr12 134606872 134606905 -9675584 - L1MB4 LINE L1 -169 6011 5979 1019 234 59 19 chr12 134606905 134606975 -9675514 - L1ME3 LINE L1 -182 5980 5914 2121 126 0 17 chr12 134606975 134607276 -9675213 + AluSx SINE Alu 1 296 -16 1019 234 59 19 chr12 134607276 134607526 -9674963 - L1ME3 LINE L1 -248 5914 5647 1825 174 7 7 chr12 134607541 134607835 -9674654 + AluJb SINE Alu 3 296 -16 436 173 0 0 chr12 134607853 134607928 -9674561 + MER5A DNA MER1_type 1 75 -114 815 152 0 0 chr12 134607928 134608060 -9674429 + FLAM_C SINE Alu 1 132 -1 222 174 0 0 chr12 134608436 134608482 -9674007 + CT-rich Low_complexity Low_complexity 2 47 0 567 202 73 39 chr12 134609210 134609388 -9673101 + MIR SINE MIR 60 243 -19 2594 61 0 3 chr12 134609414 134609726 -9672763 - AluY SINE Alu 0 311 1 536 259 104 84 chr12 134610129 134610283 -9672206 + L2 LINE L2 2736 2886 -427 1604 162 19 15 chr12 134610283 134610548 -9671941 - AluJb SINE Alu -46 266 1 536 259 104 84 chr12 134610548 134610941 -9671548 + L2 LINE L2 2886 3304 -9 3048 186 38 36 chr12 134611910 134612506 -9669983 + L1MB7 LINE L1 5462 6056 -128 2216 132 3 0 chr12 134612506 134612817 -9669672 + AluSx SINE Alu 1 312 0 3048 186 38 36 chr12 134612817 134612874 -9669615 + L1MB7 LINE L1 6056 6111 -73 1937 127 3 57 chr12 134612874 134613073 -9669416 - AluJo SINE Alu -13 299 122 2321 125 0 3 chr12 134613073 134613384 -9669105 + AluSx SINE Alu 1 310 -2 1937 127 3 57 chr12 134613384 134613500 -9668989 - AluJo SINE Alu -190 122 1 3048 186 38 36 chr12 134613500 134613558 -9668931 + L1MB7 LINE L1 6111 6175 -9 255 31 0 0 chr12 134613576 134613608 -9668881 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2087 130 0 0 chr12 134613679 134614006 -9668483 + AluSx SINE Alu 1 327 0 691 246 100 18 chr12 134614006 134614226 -9668263 + MIR SINE MIR 14 251 -11 616 136 73 0 chr12 134614592 134614702 -9667787 + MLT1D LTR MaLR 1 118 -387 1860 159 0 0 chr12 134614708 134614979 -9667510 + AluJb SINE Alu 6 276 -36 1878 124 6 83 chr12 134615011 134615325 -9667164 + AluSx SINE Alu 1 290 -22 1203 185 77 44 chr12 134615332 134615630 -9666859 + MLT1D LTR MaLR 118 425 -80 1767 167 31 3 chr12 134615739 134616032 -9666457 + AluJb SINE Alu 1 301 -11 294 127 0 165 chr12 134616035 134616070 -9666419 + MLT1D LTR MaLR 440 457 -48 2449 65 10 0 chr12 134616070 134616378 -9666111 - AluY SINE Alu 0 311 1 294 127 0 165 chr12 134616378 134616421 -9666068 + MLT1D LTR MaLR 457 505 0 970 258 57 38 chr12 134616636 134616950 -9665539 + L2 LINE L2 2819 3126 -187 1971 133 54 0 chr12 134616950 134617229 -9665260 - AluSx SINE Alu -18 294 1 970 258 57 38 chr12 134617229 134617259 -9665230 + L2 LINE L2 3126 3154 -159 1523 208 51 0 chr12 134617259 134617552 -9664937 + AluJo SINE Alu 1 308 -4 970 258 57 38 chr12 134617552 134617578 -9664911 + L2 LINE L2 3154 3197 -116 1085 210 23 15 chr12 134617581 134617815 -9664674 + MER33 DNA MER1_type 2 240 -2345 2287 122 0 3 chr12 134617815 134618119 -9664370 - AluSx SINE Alu -9 303 1 1085 210 23 15 chr12 134618119 134618146 -9664343 + MER33 DNA MER1_type 240 265 -59 553 261 0 15 chr12 134618176 134618306 -9664183 + L2 LINE L2 3186 3313 0 188 305 0 17 chr12 134619118 134619177 -9663312 + MIR3 SINE MIR 140 197 -11 919 215 53 26 chr12 134619287 134619515 -9662974 - MIR SINE MIR -10 252 19 279 220 165 44 chr12 134620119 134620210 -9662279 + MIR SINE MIR 86 187 -75 701 204 76 6 chr12 134620459 134620616 -9661873 - MIR SINE MIR -47 215 48 275 215 7 56 chr12 134621197 134621341 -9661148 + G-rich Low_complexity Low_complexity 1 137 0 294 29 0 0 chr12 134621373 134621408 -9661081 + (CGG)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr12 134621663 134621687 -9660802 + GC_rich Low_complexity Low_complexity 1 24 0 24 85 0 0 chr12 134621738 134621797 -9660692 + GC_rich Low_complexity Low_complexity 1 59 0 2313 85 23 13 chr12 134622511 134622836 -9659653 + AluSg1 SINE Alu 1 309 0 2386 109 0 0 chr12 134622840 134623153 -9659336 + AluSq SINE Alu 1 313 0 1107 181 0 0 chr12 134623153 134623335 -9659154 + AluSg/x SINE Alu 125 306 -6 1747 147 13 46 chr12 134623340 134623475 -9659014 + AluJb SINE Alu 3 141 -171 2138 82 0 55 chr12 134623475 134623806 -9658683 + AluSx SINE Alu 9 323 0 1747 147 13 46 chr12 134623806 134623975 -9658514 + AluJb SINE Alu 141 298 -14 539 203 89 0 chr12 134623990 134624113 -9658376 + FLAM_A SINE Alu 6 139 -3 2099 121 10 7 chr12 134624142 134624439 -9658050 - AluSx SINE Alu -12 300 3 25 0 0 0 chr12 134624441 134624466 -9658023 + AT_rich Low_complexity Low_complexity 1 25 0 219 33 33 0 chr12 134624479 134624509 -9657980 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 201 74 0 0 chr12 134624509 134624536 -9657953 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 * 493 114 11 11 chr12 134624534 134624622 -9657867 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 1879 122 4 11 chr12 134625013 134625275 -9657214 - AluSx SINE Alu -52 260 1 2216 104 3 10 chr12 134625562 134625869 -9656620 - AluSx SINE Alu -7 305 1 1801 186 3 3 chr12 134625896 134626202 -9656287 + AluJb SINE Alu 1 306 -6 207 0 0 0 chr12 134626658 134626681 -9655808 + (GAA)n Simple_repeat Simple_repeat 2 24 0 2268 95 20 10 chr12 134626777 134627071 -9655418 - AluSc SINE Alu -12 297 1 2038 122 17 0 chr12 134627090 134627384 -9655105 - AluSx SINE Alu -13 299 1 372 195 115 18 chr12 134627421 134627534 -9654955 + L2 LINE L2 3136 3259 -13 325 272 114 18 chr12 134627572 134627686 -9654803 + MIR SINE MIR 32 156 -106 2445 87 0 0 chr12 134627809 134628121 -9654368 + AluSx SINE Alu 1 312 0 2136 123 0 7 chr12 134629093 134629386 -9653103 - AluSx SINE Alu -17 295 5 815 184 61 0 chr12 134629456 134629619 -9652870 + MER58B DNA MER1_type 167 339 -2 210 328 0 0 chr12 134629630 134629691 -9652798 - L2 LINE L2 -556 2758 2698 365 268 167 68 chr12 134630216 134630408 -9652081 + MLT1I LTR MaLR 7 179 -230 225 0 0 0 chr12 134630408 134630433 -9652056 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1933 140 0 7 chr12 134630437 134630722 -9651767 - AluSx SINE Alu -29 283 1 365 268 167 68 chr12 134630722 134630890 -9651599 + MLT1I LTR MaLR 181 408 -1 1186 280 103 21 chr12 134630897 134631275 -9651214 - MLT1J2 LTR MaLR -21 429 21 2069 119 0 73 chr12 134631330 134631657 -9650832 + AluJb SINE Alu 1 303 -9 1983 168 10 0 chr12 134631659 134631963 -9650526 + AluJb SINE Alu 3 309 -3 729 203 0 0 chr12 134632075 134632208 -9650281 + FLAM_C SINE Alu 1 133 0 255 125 0 0 chr12 134632221 134632261 -9650228 + (GGAGAA)n Simple_repeat Simple_repeat 3 42 0 428 264 128 40 chr12 134632261 134632511 -9649978 + L1MC/D LINE L1 5436 5707 -2101 2296 105 0 0 chr12 134632511 134632805 -9649684 - AluSq SINE Alu -15 298 5 841 226 11 6 chr12 134632813 134632990 -9649499 - AluJo SINE Alu -17 295 118 537 121 0 0 chr12 134633049 134633132 -9649357 + (CTATT)n Simple_repeat Simple_repeat 1 83 0 668 167 28 0 chr12 134633133 134633241 -9649248 - AluJo SINE Alu -200 112 2 457 130 0 0 chr12 134633571 134633640 -9648849 + AluS SINE Alu 6 74 -239 21 57 0 0 chr12 134633743 134633778 -9648711 + AT_rich Low_complexity Low_complexity 1 35 0 1601 124 40 40 chr12 134633778 134634077 -9648412 + AluJb SINE Alu 1 299 -13 2288 74 10 7 chr12 134634124 134634422 -9648067 + AluSq SINE Alu 1 299 -14 418 141 51 0 chr12 134634422 134634500 -9647989 + L1MC3 LINE L1 6995 7076 -709 376 293 130 29 chr12 134634506 134634714 -9647775 - MIR SINE MIR -25 237 9 3289 140 28 64 chr12 134635286 134635416 -9647073 + L1MB2 LINE L1 5476 5609 -562 2100 149 0 0 chr12 134635416 134635717 -9646772 + AluSx SINE Alu 1 301 -11 3289 140 28 64 chr12 134635717 134635934 -9646555 + L1MB2 LINE L1 5609 5832 -339 2681 46 0 0 chr12 134635934 134636238 -9646251 + AluY SINE Alu 1 304 -7 3289 140 28 64 chr12 134636238 134636609 -9645880 + L1MB2 LINE L1 5832 6169 -2 2176 126 0 7 chr12 134636620 134636930 -9645559 + AluSx SINE Alu 1 308 -4 24 0 0 0 chr12 134636933 134636957 -9645532 + AT_rich Low_complexity Low_complexity 1 24 0 460 336 116 9 chr12 134636972 134637290 -9645199 + LTR16B LTR ERVL 39 390 -74 1739 189 0 29 chr12 134637412 134637719 -9644770 + AluJb SINE Alu 13 310 -2 940 163 34 146 chr12 134637863 134637959 -9644530 + MER33 DNA MER1_type 14 119 -2466 1994 123 7 0 chr12 134637959 134638273 -9644216 + AluSg SINE Alu 3 318 0 940 163 34 146 chr12 134638273 134638286 -9644203 + MER33 DNA MER1_type 119 132 -2453 2309 112 0 0 chr12 134638286 134638582 -9643907 + AluSx SINE Alu 3 298 -14 1477 176 61 8 chr12 134638584 134638845 -9643644 - AluJb SINE Alu -4 308 34 940 163 34 146 chr12 134638845 134639046 -9643443 + MER33 DNA MER1_type 133 289 -2296 2377 104 3 0 chr12 134639046 134639353 -9643136 - AluSp SINE Alu -5 308 1 940 163 34 146 chr12 134639353 134639386 -9643103 + MER33 DNA MER1_type 289 324 0 582 214 162 92 chr12 134639457 134639593 -9642896 + AluSg1 SINE Alu 9 134 -175 2473 86 0 0 chr12 134639593 134639894 -9642595 + AluY SINE Alu 1 301 -10 582 214 162 92 chr12 134639894 134640028 -9642461 + AluSg1 SINE Alu 134 298 -11 1732 158 29 4 chr12 134640032 134640311 -9642178 + AluJb SINE Alu 15 300 -12 2088 129 0 20 chr12 134640315 134640617 -9641872 + AluSx SINE Alu 1 296 -16 799 250 73 4 chr12 134640619 134640867 -9641622 - L1ME3 LINE L1 -251 5911 5647 1838 170 7 7 chr12 134640882 134641176 -9641313 + AluJb SINE Alu 3 296 -16 436 173 0 0 chr12 134641194 134641269 -9641220 + MER5A DNA MER1_type 1 75 -114 815 152 0 0 chr12 134641269 134641401 -9641088 + FLAM_C SINE Alu 1 132 -1 222 174 0 0 chr12 134641777 134641823 -9640666 + CT-rich Low_complexity Low_complexity 2 47 0 567 202 73 39 chr12 134642551 134642729 -9639760 + MIR SINE MIR 60 243 -19 2351 100 0 25 chr12 134642755 134643075 -9639414 - AluSx SINE Alu 0 312 1 2347 97 0 0 chr12 134643075 134643375 -9639114 - AluSq SINE Alu 0 313 14 1714 178 0 36 chr12 134643382 134643542 -9638947 - AluJo SINE Alu -19 293 148 2693 46 0 3 chr12 134643542 134643849 -9638640 - AluY SINE Alu -5 306 1 1714 178 0 36 chr12 134643849 134643992 -9638497 - AluJo SINE Alu -164 148 1 269 217 0 0 chr12 134644104 134644164 -9638325 + L1MB7 LINE L1 5767 5826 -348 * 371 244 122 8 chr12 134644158 134644289 -9638200 + L1 LINE L1 4802 4947 -1199 275 190 16 2 chr12 134644314 134644384 -9638105 + AluJo/FLAM SINE Alu 71 131 -171 811 105 0 0 chr12 134644387 134644492 -9637997 + AluSq/x SINE Alu 1 105 -208 513 115 0 0 chr12 134644493 134644571 -9637918 + L1MB2 LINE L1 5997 6074 -97 1610 165 3 73 chr12 134644610 134644937 -9637552 + AluJo SINE Alu 5 308 -4 2123 155 0 0 chr12 134644946 134645255 -9637234 + AluSx SINE Alu 1 309 -3 631 158 187 0 chr12 134645611 134645750 -9636739 - MER21B LTR ERV1 -370 493 329 368 228 32 65 chr12 134645753 134645815 -9636674 + L1ME3 LINE L1 6040 6102 -60 1554 206 14 0 chr12 134645815 134646101 -9636388 + AluJo SINE Alu 1 290 -22 2312 53 7 10 chr12 134646102 134646430 -9636059 + AluY SINE Alu 1 301 -10 368 228 32 65 chr12 134646430 134646488 -9636001 + L1ME3 LINE L1 6101 6158 -4 1766 151 37 31 chr12 134646497 134646847 -9635642 + L1MB7 LINE L1 5814 6165 -19 2108 92 0 10 chr12 134646909 134647202 -9635287 + AluSg SINE Alu 1 290 -20 1660 168 0 50 chr12 134647212 134647534 -9634955 + AluJb SINE Alu 1 306 -6 496 321 77 18 chr12 134647605 134647826 -9634663 + MIR SINE MIR 29 262 0 1370 140 3 122 chr12 134647949 134648137 -9634352 - AluJo SINE Alu -16 296 164 2133 94 3 17 chr12 134648137 134648436 -9634053 + AluSq SINE Alu 1 295 -18 1370 140 3 122 chr12 134648436 134648583 -9633906 - AluJo SINE Alu -148 164 1 827 195 86 0 chr12 134648588 134648762 -9633727 + MER5A DNA MER1_type 1 189 0 1096 80 0 20 chr12 134648789 134648939 -9633550 - AluSq/x SINE Alu -164 148 2 1909 144 0 7 chr12 134649589 134649895 -9632594 + AluSx SINE Alu 1 304 -8 2274 68 0 3 chr12 134649901 134650195 -9632294 + AluY SINE Alu 7 299 -12 198 0 0 0 chr12 134650223 134650245 -9632244 + (TTA)n Simple_repeat Simple_repeat 2 23 0 299 217 42 106 chr12 134650373 134650562 -9631927 + AluSg/x SINE Alu 123 299 -3 1605 126 10 30 chr12 134650624 134650925 -9631564 + AluSp SINE Alu 3 297 -16 430 170 38 75 chr12 134650972 134651078 -9631411 + FLAM_A SINE Alu 9 110 -32 2130 109 6 0 chr12 134651089 134651400 -9631089 - AluSp SINE Alu 0 313 1 720 0 0 0 chr12 134651417 134651497 -9630992 + (CA)n Simple_repeat Simple_repeat 2 81 0 1500 178 42 74 chr12 134651497 134651857 -9630632 + L1MB4 LINE L1 5777 6147 -33 2031 115 0 0 chr12 134651857 134652162 -9630327 + AluSg SINE Alu 1 305 -5 2006 114 4 0 chr12 134652162 134652466 -9630023 + AluSx SINE Alu 3 307 0 1500 178 42 74 chr12 134652466 134652507 -9629982 + L1MB4 LINE L1 6145 6167 -13 1978 134 22 110 chr12 134652519 134652649 -9629840 + L1MC3 LINE L1 6687 6827 -958 1827 137 31 0 chr12 134652649 134652941 -9629548 + AluJb SINE Alu 3 303 -9 1685 177 0 0 chr12 134652946 134653240 -9629249 + AluSx SINE Alu 3 296 -16 2240 81 3 7 chr12 134653242 134653549 -9628940 + AluSx SINE Alu 1 306 -6 1978 134 22 110 chr12 134653549 134653755 -9628734 + L1MC3 LINE L1 6832 7055 -730 1988 120 0 10 chr12 134653755 134654063 -9628426 + AluSx SINE Alu 2 306 -6 2135 104 0 3 chr12 134654068 134654375 -9628114 + AluSq SINE Alu 1 306 -7 2208 88 3 0 chr12 134654376 134654673 -9627816 + AluSp SINE Alu 2 299 -14 1978 134 22 110 chr12 134654673 134654782 -9627707 + L1MC3 LINE L1 7058 7109 -676 274 167 31 135 chr12 134654782 134654878 -9627611 + AluJo SINE Alu 70 155 -147 447 200 0 0 chr12 134654878 134654958 -9627531 + FLAM SINE Alu 46 125 -18 473 180 45 0 chr12 134654967 134655056 -9627433 - Charlie5 DNA MER1_type -2507 105 13 884 119 0 0 chr12 134655059 134655274 -9627215 + (TA)n Simple_repeat Simple_repeat 1 215 0 813 116 0 0 chr12 134655341 134655496 -9626993 + (TA)n Simple_repeat Simple_repeat 2 156 0 276 73 0 73 chr12 134655596 134655651 -9626838 - AluY SINE Alu -207 94 44 1794 149 3 3 chr12 134655679 134656015 -9626474 + AluSx SINE Alu 1 336 0 1302 173 7 60 chr12 134656255 134656555 -9625934 - AluJb SINE Alu -21 291 8 2495 48 0 3 chr12 134656745 134657057 -9625432 + AluY SINE Alu 1 311 0 586 200 97 38 chr12 134657083 134657268 -9625221 - MIR SINE MIR -19 243 48 1976 119 0 7 chr12 134657766 134658060 -9624429 + AluSx SINE Alu 1 292 -20 1688 179 0 13 chr12 134658070 134658378 -9624111 + AluSx SINE Alu 1 304 -8 1885 127 0 3 chr12 134658384 134658668 -9623821 + AluY SINE Alu 7 289 -22 1286 161 39 0 chr12 134658669 134658899 -9623590 + L1MB2 LINE L1 5594 5832 -339 556 166 0 136 chr12 134659023 134659258 -9623231 + L1MA4 LINE L1 6098 6300 0 2320 31 68 0 chr12 134660266 134660558 -9621931 + L1PA4 LINE L1 5844 6155 0 193 213 16 98 chr12 134660630 134660691 -9621798 - MER5B DNA MER1_type 0 178 123 1795 179 0 0 chr12 134660692 134661004 -9621485 + AluSx SINE Alu 1 312 0 2675 99 21 0 chr12 134661075 134661448 -9621041 - L1PA11 LINE L1 -6 6168 5788 3868 195 67 22 chr12 134661576 134661709 -9620780 + L1MB7 LINE L1 5074 5200 -984 2235 105 0 0 chr12 134661709 134662022 -9620467 + AluSq SINE Alu 1 313 0 3868 195 67 22 chr12 134662022 134662219 -9620270 + L1MB7 LINE L1 5200 5387 -797 1795 172 0 13 chr12 134662219 134662533 -9619956 + AluJo SINE Alu 1 310 -2 3868 195 67 22 chr12 134662533 134663200 -9619289 + L1MB7 LINE L1 5387 6115 -69 1599 154 44 0 chr12 134663209 134663504 -9618985 - AluJb SINE Alu 0 307 1 2298 106 0 0 chr12 134663674 134663985 -9618504 + AluSx SINE Alu 1 311 -1 374 150 5 18 chr12 134664011 134664085 -9618404 + Alu SINE Alu 1 49 -253 1046 147 0 0 chr12 134664121 134664271 -9618218 - AluSq SINE Alu -14 299 150 2066 107 3 0 chr12 134664411 134664701 -9617788 + AluSx SINE Alu 1 291 -21 272 91 23 0 chr12 134664701 134664745 -9617744 + (GA)n Simple_repeat Simple_repeat 1 45 0 425 276 41 0 chr12 134665086 134665209 -9617280 - L1MC5 LINE L1 -514 7447 7320 819 237 70 27 chr12 134665279 134665536 -9616953 - L1MC5 LINE L1 -756 7205 6938 1535 172 3 24 chr12 134665537 134665674 -9616815 + AluJo SINE Alu 1 139 -173 2217 81 0 13 chr12 134665674 134665972 -9616517 + AluY SINE Alu 1 294 -17 1535 172 3 24 chr12 134665972 134666131 -9616358 + AluJo SINE Alu 139 291 -21 2138 119 0 3 chr12 134666162 134666464 -9616025 - AluSx SINE Alu -11 301 1 314 254 0 0 chr12 134666514 134666585 -9615904 - L1MC4 LINE L1 -1043 6999 6929 949 206 0 20 chr12 134666650 134666854 -9615635 - AluJo SINE Alu -6 306 107 1657 143 0 57 chr12 134666914 134667247 -9615242 + AluJb SINE Alu 1 316 0 255 282 91 27 chr12 134667395 134667680 -9614809 + L2 LINE L2 1841 2241 -1073 * 391 287 16 39 chr12 134667674 134667803 -9614686 - L2 LINE L2 -606 2708 2583 689 211 111 114 chr12 134667804 134668102 -9614387 + L2 LINE L2 3014 3310 -3 278 299 81 0 chr12 134668101 134668188 -9614301 + L2 LINE L2 2251 2344 -970 * 450 192 0 20 chr12 134668216 134668315 -9614174 - AluSg/x SINE Alu -5 304 208 354 224 56 0 chr12 134668321 134668428 -9614061 + L2 LINE L2 2348 2460 -854 704 118 0 27 chr12 134668428 134668538 -9613951 - FLAM_C SINE Alu -8 135 29 610 251 220 36 chr12 134668542 134668695 -9613794 + L2 LINE L2 2455 2579 -734 2656 92 24 8 chr12 134668695 134669064 -9613425 + THE1C LTR MaLR 1 375 0 610 251 220 36 chr12 134669064 134669378 -9613111 + L2 LINE L2 2579 3037 -276 1826 147 30 0 chr12 134669468 134669767 -9612722 + AluJb SINE Alu 1 308 -4 535 288 85 39 chr12 134669767 134669981 -9612508 + L2 LINE L2 3019 3251 -62 3618 116 4 4 chr12 134669981 134670492 -9611997 + MER9 LTR ERVK 1 511 0 535 288 85 39 chr12 134670492 134670558 -9611931 + L2 LINE L2 3251 3312 -1 1671 174 48 26 chr12 134671053 134671404 -9611085 + MLT1A1 LTR MaLR 1 359 -6 2952 182 8 76 chr12 134672424 134673055 -9609434 + MER77 LTR ERV1 5 592 -13 2026 128 17 0 chr12 134673609 134673905 -9608584 + AluSx SINE Alu 3 303 -9 246 265 111 34 chr12 134674190 134674307 -9608182 + MIR SINE MIR 103 228 -34 198 0 0 0 chr12 134674367 134674389 -9608100 + (A)n Simple_repeat Simple_repeat 1 22 0 614 161 97 32 chr12 134674495 134674619 -9607870 + FLAM_A SINE Alu 2 133 0 1931 104 7 28 chr12 134674621 134674910 -9607579 - AluSx SINE Alu -21 291 9 1016 158 0 11 chr12 134674940 134675117 -9607372 + AluJo SINE Alu 120 294 -18 262 125 236 0 chr12 134675123 134675195 -9607294 + L1MB4 LINE L1 6091 6179 -1 1659 113 21 98 chr12 134675400 134675728 -9606761 + AluYb8 SINE Alu 1 303 -15 1635 166 21 3 chr12 134675838 134676128 -9606361 + AluJo SINE Alu 1 295 -17 1523 188 102 37 chr12 134676287 134676442 -9606047 + MLT1C LTR MaLR 8 152 -315 2203 89 0 0 chr12 134676442 134676733 -9605756 + AluSq SINE Alu 1 291 -22 239 0 0 31 chr12 134676733 134676765 -9605724 + (GGA)n Simple_repeat Simple_repeat 3 33 0 1523 188 102 37 chr12 134676765 134677040 -9605449 + MLT1C LTR MaLR 151 467 0 192 265 10 61 chr12 134677393 134677491 -9604998 - L2 LINE L2 -2917 397 305 503 186 20 0 chr12 134677559 134677661 -9604828 + L1MB2 LINE L1 6067 6170 -1 2299 102 0 6 chr12 134677669 134677983 -9604506 + AluSx SINE Alu 1 312 0 263 324 135 8 chr12 134678208 134678467 -9604022 + L1MC4a LINE L1 5626 5917 -1891 243 0 0 0 chr12 134678562 134678589 -9603900 + (TAGG)n Simple_repeat Simple_repeat 2 28 0 709 182 17 0 chr12 134678636 134678812 -9603677 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 646 197 38 0 chr12 134678824 134679174 -9603315 + (TAGA)n Simple_repeat Simple_repeat 1 363 0 542 173 32 0 chr12 134679194 134679350 -9603139 + (TAGA)n Simple_repeat Simple_repeat 1 161 0 2166 110 0 0 chr12 134680711 134681010 -9601479 + AluSx SINE Alu 1 299 -13 1992 123 3 16 chr12 134681012 134681322 -9601167 + AluJb SINE Alu 1 306 -6 548 213 144 6 chr12 134681938 134682098 -9600391 + MIR SINE MIR 81 262 0 210 260 94 10 chr12 134682905 134683001 -9599488 - MIR SINE MIR -56 152 49 2267 94 0 0 chr12 134683667 134683965 -9598524 + AluSx SINE Alu 1 298 -14 2041 117 3 7 chr12 134686052 134686350 -9596139 + AluSx SINE Alu 1 297 -15 2000 123 3 0 chr12 134687422 134687715 -9594774 - AluSx SINE Alu -18 294 1 249 297 43 45 chr12 134688335 134688501 -9593988 + MIR SINE MIR 20 194 -14 180 0 0 0 chr12 134688546 134688566 -9593923 + (A)n Simple_repeat Simple_repeat 1 20 0 1071 151 99 182 chr12 134688598 134688763 -9593726 - Tigger6 DNA MER2_type 0 1597 1420 2498 55 3 0 chr12 134688763 134689073 -9593416 - AluY SINE Alu 0 311 1 1071 151 99 182 chr12 134689073 134689306 -9593183 - Tigger6 DNA MER2_type -177 1420 1243 2132 109 6 13 chr12 134689306 134689619 -9592870 - AluSx SINE Alu -1 311 1 1071 151 99 182 chr12 134689619 134689702 -9592787 - Tigger6 DNA MER2_type -354 1243 1155 480 204 46 9 chr12 134689789 134689897 -9592592 - Tigger6 DNA MER2_type -1485 112 1 286 214 0 0 chr12 134690029 134690085 -9592404 - MER119 DNA MER1_type 0 583 528 336 224 0 0 chr12 134690133 134690200 -9592289 - MER119 DNA MER1_type -42 541 475 253 266 106 21 chr12 134690210 134690304 -9592185 - MER119 DNA MER1_type -453 130 29 1303 211 117 12 chr12 134691216 134691557 -9590932 + MLT1B LTR MaLR 10 386 -4 225 69 0 0 chr12 134692333 134692362 -9590127 - MLT1B LTR MaLR -69 321 293 1924 115 13 10 chr12 134692714 134693026 -9589463 + AluSq SINE Alu 1 313 0 1977 125 3 0 chr12 134693212 134693501 -9588988 - AluJb SINE Alu -22 290 1 318 218 181 15 chr12 134694527 134694660 -9587829 + MIR SINE MIR 33 187 -75 543 275 116 19 chr12 134695217 134695424 -9587065 - MIR SINE MIR -8 254 28 1886 147 3 0 chr12 134695567 134695866 -9586623 - AluJo SINE Alu -12 300 1 582 216 8 37 chr12 134696851 134696985 -9585504 + L2 LINE L2 3180 3309 -4 2008 90 61 0 chr12 134697931 134698209 -9584280 - AluSx SINE Alu -17 295 1 1003 131 34 23 chr12 134698209 134698385 -9584104 - AluJb SINE Alu -5 307 130 29 47 0 0 chr12 134698501 134698544 -9583945 + AT_rich Low_complexity Low_complexity 1 43 0 2305 62 0 7 chr12 134699145 134699434 -9583055 - AluY SINE Alu -9 302 16 2208 85 6 22 chr12 134701183 134701501 -9580988 - AluSp SINE Alu 0 313 1 2218 95 3 0 chr12 134702024 134702319 -9580170 - AluSx SINE Alu -16 296 1 1392 160 52 52 chr12 134703110 134703237 -9579252 + AluJo SINE Alu 1 127 -185 204 67 0 0 chr12 134703237 134703267 -9579222 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1392 160 52 52 chr12 134703267 134703426 -9579063 + AluJo SINE Alu 126 287 -25 1223 133 4 83 chr12 134703484 134703724 -9578765 - AluSx SINE Alu -91 221 1 459 330 28 51 chr12 134704119 134704334 -9578155 + HAL1b LINE L1 61 270 -1078 1895 131 0 26 chr12 134704363 134704669 -9577820 + AluSx SINE Alu 1 298 -14 1006 146 118 0 chr12 134704699 134704906 -9577583 - AluJb SINE Alu 0 313 86 295 268 62 62 chr12 134704974 134705183 -9577306 + HAL1b LINE L1 373 581 -767 204 40 0 0 chr12 134706273 134706298 -9576191 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 347 148 40 114 chr12 134706375 134706465 -9576024 + L1MC4a LINE L1 5284 5360 -2448 2097 80 39 0 chr12 134706465 134706751 -9575738 - AluSp SINE Alu -16 297 1 347 148 40 114 chr12 134706751 134706809 -9575680 + L1MC4a LINE L1 5360 5421 -2387 362 225 356 15 chr12 134706836 134707170 -9575319 + L1MC4a LINE L1 5620 6067 -1741 863 119 0 0 chr12 134707325 134707443 -9575046 + FLAM_C SINE Alu 1 118 -15 25 31 0 0 chr12 134707443 134707475 -9575014 + AT_rich Low_complexity Low_complexity 1 32 0 2190 94 0 16 chr12 134708382 134708691 -9573798 + AluSc SINE Alu 1 304 -5 2046 122 0 3 chr12 134708701 134708995 -9573494 + AluSx SINE Alu 1 293 -19 383 87 14 0 chr12 134709662 134709731 -9572758 + (CA)n Simple_repeat Simple_repeat 2 71 0 408 267 167 14 chr12 134710263 134710484 -9572005 - MIR SINE MIR -4 258 4 1793 220 54 39 chr12 134711053 134711541 -9570948 - MER82 DNA MER2_type 0 653 48 2115 109 3 3 chr12 134711541 134711843 -9570646 - AluSp SINE Alu -11 302 1 1793 220 54 39 chr12 134711843 134711888 -9570601 - MER82 DNA MER2_type -605 48 5 1056 286 155 40 chr12 134711937 134713096 -9569393 - L2 LINE L2 -44 3269 2002 242 289 36 0 chr12 134713113 134713196 -9569293 + L1MC4 LINE L1 6461 6546 -1496 307 159 0 0 chr12 134713205 134713249 -9569240 + AluJ/FLAM SINE Alu 25 68 -234 620 114 0 0 chr12 134713249 134713337 -9569152 + AluJ/FLAM SINE Alu 15 102 -210 362 264 108 18 chr12 134713595 134713762 -9568727 + L1ME4a LINE L1 5930 6111 -10 1571 129 5 0 chr12 134713868 134714092 -9568397 + AluSx SINE Alu 1 225 -87 1727 125 0 80 chr12 134714425 134714519 -9567970 + AluSx SINE Alu 1 101 -211 2505 48 0 3 chr12 134714519 134714829 -9567660 + AluY SINE Alu 1 309 -2 1727 125 0 80 chr12 134714829 134715046 -9567443 + AluSx SINE Alu 101 287 -25 189 0 0 0 chr12 134715051 134715072 -9567417 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 2043 271 87 54 chr12 134715410 134716338 -9566151 + L1MC4 LINE L1 6673 7650 -392 932 144 158 123 chr12 134716338 134716630 -9565859 + AluJo SINE Alu 1 302 0 2043 271 87 54 chr12 134716630 134716891 -9565598 + L1MC4 LINE L1 7650 7901 -141 1391 279 75 65 chr12 134717165 134717297 -9565192 + L1MEd LINE L1 3 132 -5987 2039 99 34 0 chr12 134717297 134717589 -9564900 + AluSg SINE Alu 1 302 -8 1391 279 75 65 chr12 134717589 134718212 -9564277 + L1MEd LINE L1 132 766 -5353 1882 118 12 59 chr12 134719056 134719378 -9563111 - AluJo SINE Alu -5 307 1 2100 100 10 3 chr12 134719642 134719951 -9562538 + AluSq SINE Alu 3 313 0 2027 76 0 18 chr12 134720315 134720592 -9561897 - AluSx SINE Alu 0 312 41 340 237 130 51 chr12 134720715 134720892 -9561597 + MER102b DNA MER1_type 145 335 -6 1909 224 48 25 chr12 134721476 134721868 -9560621 + MER82 DNA MER2_type 1 475 -178 1830 127 55 3 chr12 134721868 134722160 -9560329 + AluJb SINE Alu 1 307 -5 1909 224 48 25 chr12 134722160 134722344 -9560145 + MER82 DNA MER2_type 475 653 0 824 143 0 0 chr12 134722371 134722497 -9559992 - FLAM_C SINE Alu -17 126 1 226 296 37 0 chr12 134723060 134723141 -9559348 + MIR3 SINE MIR 125 208 0 856 173 20 74 chr12 134723362 134723421 -9559068 + MER20 DNA MER1_type 29 90 -129 1429 175 18 28 chr12 134723421 134723728 -9558761 + AluJo SINE Alu 1 304 0 856 173 20 74 chr12 134723728 134723869 -9558620 + MER20 DNA MER1_type 90 219 0 1300 183 68 10 chr12 134723881 134724176 -9558313 - MER33 DNA MER1_type -4 320 9 198 203 266 0 chr12 134724184 134724263 -9558226 + L2 LINE L2 3150 3249 -23 1075 212 124 12 chr12 134724359 134724618 -9557871 - AluJo SINE Alu -13 289 2 2044 116 11 0 chr12 134724644 134724929 -9557560 + AluSx SINE Alu 1 288 -24 197 33 33 0 chr12 134724934 134724964 -9557525 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 884 258 192 21 chr12 134724965 134725055 -9557434 + L2 LINE L2 2355 2428 -885 2250 82 3 3 chr12 134725055 134725360 -9557129 + AluSg1 SINE Alu 1 305 -4 884 258 192 21 chr12 134725360 134726072 -9556417 + L2 LINE L2 2428 3313 0 661 210 28 7 chr12 134726116 134726259 -9556230 - MIR SINE MIR -71 191 46 2209 39 7 0 chr12 134727197 134727511 -9554978 - AluY SINE Alu 0 316 1 193 231 0 0 chr12 134727511 134727550 -9554939 - L2 LINE L2 -5 3308 3270 3196 126 87 49 chr12 134727595 134727847 -9554642 + MER39B LTR ERV1 1 242 -411 2021 91 56 0 chr12 134727847 134728132 -9554357 + AluSg SINE Alu 1 301 -9 1776 129 29 4 chr12 134728139 134728452 -9554037 + AluSx SINE Alu 1 320 0 1932 101 42 10 chr12 134728452 134728740 -9553749 + AluSx SINE Alu 1 297 -15 3196 126 87 49 chr12 134728740 134729106 -9553383 + MER39B LTR ERV1 246 653 0 276 273 171 37 chr12 134729163 134729216 -9553273 + L2 LINE L2 3102 3147 -166 255 31 0 0 chr12 134729216 134729248 -9553241 + (CA)n Simple_repeat Simple_repeat 1 32 0 276 273 171 37 chr12 134729248 134729381 -9553108 + L2 LINE L2 3147 3313 0 1577 181 20 10 chr12 134729511 134729804 -9552685 + AluJb SINE Alu 1 296 -16 702 159 87 0 chr12 134729804 134729930 -9552559 + AluJb SINE Alu 159 295 -17 279 328 124 27 chr12 134729996 134730182 -9552307 + MIR SINE MIR 59 262 0 231 306 10 41 chr12 134730236 134730334 -9552155 + MIR SINE MIR 55 149 -59 23 0 0 0 chr12 134730822 134730845 -9551644 + AT_rich Low_complexity Low_complexity 1 23 0 1888 129 2 114 chr12 134732259 134732653 -9549836 - MER47A DNA MER2_type -1 365 16 1274 193 13 0 chr12 134732728 134732961 -9549528 - AluJo SINE Alu -41 271 36 223 255 96 75 chr12 134732976 134733070 -9549419 - MIR3 SINE MIR -28 180 85 2079 128 7 0 chr12 134733490 134733796 -9548693 - AluSx SINE Alu -4 308 1 28 29 0 0 chr12 134733802 134733837 -9548652 + AT_rich Low_complexity Low_complexity 1 35 0 1963 94 0 4 chr12 134733837 134734103 -9548386 - AluSq SINE Alu -12 301 37 377 206 15 0 chr12 134735059 134735127 -9547362 - AluJ/F(R)AM SINE Alu -98 204 136 2235 94 0 0 chr12 134735128 134735425 -9547064 - AluSc SINE Alu -12 297 1 2219 96 3 0 chr12 134735924 134736225 -9546264 - AluSx SINE Alu -10 302 1 2240 96 0 7 chr12 134736625 134736926 -9545563 - AluSx SINE Alu -13 299 1 1037 141 91 25 chr12 134736929 134737127 -9545362 - AluJo SINE Alu -17 295 85 181 27 81 27 chr12 134737152 134737189 -9545300 + A-rich Low_complexity Low_complexity 5 43 0 815 236 62 10 chr12 134738076 134738284 -9544205 - MER20 DNA MER1_type 0 219 1 1611 120 75 4 chr12 134739525 134739792 -9542697 + AluSx SINE Alu 27 312 0 2296 80 7 0 chr12 134740277 134740579 -9541910 + AluSx SINE Alu 1 304 -8 232 306 45 27 chr12 134740613 134740724 -9541765 + MIR3 SINE MIR 91 203 -5 779 154 8 0 chr12 134740863 134740986 -9541503 + MLT1F1 LTR MaLR 392 515 -52 269 352 22 0 chr12 134741082 134741173 -9541316 + MIR3 SINE MIR 11 103 -105 21 36 0 0 chr12 134741952 134741980 -9540509 + GC_rich Low_complexity Low_complexity 1 28 0 275 113 19 0 chr12 134742335 134742388 -9540101 + (CCG)n Simple_repeat Simple_repeat 2 55 0 2095 90 0 37 chr12 134742716 134742893 -9539596 - AluSx SINE Alu -2 310 149 2192 71 13 13 chr12 134742893 134743202 -9539287 - AluSg SINE Alu -1 309 1 2095 90 0 37 chr12 134743202 134743346 -9539143 - AluSx SINE Alu -163 149 1 925 122 14 0 chr12 134743370 134743518 -9538971 - FRAM SINE Alu -10 166 17 410 233 28 64 chr12 134743568 134743716 -9538773 + L1ME3 LINE L1 5975 6112 -50 1939 127 0 7 chr12 134743716 134744015 -9538474 - AluSq SINE Alu -15 298 2 410 233 28 64 chr12 134744015 134744057 -9538432 + L1ME3 LINE L1 6112 6154 -8 248 281 129 48 chr12 134744074 134744284 -9538205 + L2 LINE L2 2857 3083 -189 329 211 119 37 chr12 134744450 134744559 -9537930 + MIR SINE MIR 33 150 -58 2404 123 24 68 chr12 134744712 134744778 -9537711 - Tigger2 DNA MER2_type 0 2718 2651 2210 85 0 0 chr12 134744778 134745073 -9537416 - AluSx SINE Alu -17 295 1 2404 123 24 68 chr12 134745073 134745098 -9537391 - Tigger2 DNA MER2_type -67 2651 2626 2209 90 17 0 chr12 134745098 134745397 -9537092 - AluSq SINE Alu -9 304 1 2404 123 24 68 chr12 134745397 134745461 -9537028 - Tigger2 DNA MER2_type -92 2626 2561 2029 141 0 0 chr12 134745461 134745773 -9536716 - AluSx SINE Alu 0 312 1 2404 123 24 68 chr12 134745773 134746071 -9536418 - Tigger2 DNA MER2_type -157 2561 2283 2033 127 0 0 chr12 134746071 134746378 -9536111 - AluSx SINE Alu -5 307 1 444 156 0 0 chr12 134746381 134746445 -9536044 + MER8 DNA MER2_type 176 239 0 2312 65 0 29 chr12 134746650 134746959 -9535530 - AluY SINE Alu -9 302 3 2133 87 0 32 chr12 134746961 134747270 -9535219 - AluSx SINE Alu -13 299 1 1320 168 50 81 chr12 134747322 134747644 -9534845 - AluJo SINE Alu 0 312 1 189 0 0 0 chr12 134747644 134747665 -9534824 + (T)n Simple_repeat Simple_repeat 1 21 0 1722 147 0 34 chr12 134747815 134748107 -9534382 + AluJo SINE Alu 1 282 -30 333 160 0 0 chr12 134748107 134748132 -9534357 + FLAM_C SINE Alu 1 317 0 258 198 0 158 chr12 134748199 134748300 -9534189 - MER102a DNA MER1_type -3 327 243 2005 113 34 0 chr12 134748671 134748962 -9533527 - AluSx SINE Alu -11 301 1 2321 88 0 3 chr12 134748974 134749281 -9533208 - AluSq SINE Alu -7 306 1 210 149 21 64 chr12 134749371 134749418 -9533071 + L2 LINE L2 3268 3312 -1 2308 133 100 42 chr12 134749520 134749583 -9532906 - L1MB7 LINE L1 -14 6170 6112 2036 107 0 33 chr12 134749583 134749883 -9532606 + AluSx SINE Alu 9 298 -14 2308 133 100 42 chr12 134749883 134750271 -9532218 - L1MB7 LINE L1 -72 6112 5693 1555 152 25 0 chr12 134750271 134750515 -9531974 + AluSx SINE Alu 1 250 -62 724 186 0 0 chr12 134750515 134750628 -9531861 - AluSq/x SINE Alu -199 114 2 1566 190 138 17 chr12 134750643 134750991 -9531498 + MLT1F LTR MaLR 153 542 0 303 254 0 0 chr12 134750996 134751063 -9531426 + LTR33A LTR ERVL 441 507 -16 1841 177 55 0 chr12 134751142 134751470 -9531019 - MER7A DNA MER2_type 0 346 3 333 158 74 84 chr12 134751848 134751900 -9530589 - MLT1K LTR MaLR -100 488 436 1893 121 14 7 chr12 134751900 134752197 -9530292 + AluSx SINE Alu 1 299 -13 333 158 74 84 chr12 134752197 134752239 -9530250 - MLT1K LTR MaLR -152 436 395 233 98 24 0 chr12 134752239 134752280 -9530209 + (TC)n Simple_repeat Simple_repeat 2 43 0 1833 146 3 7 chr12 134752339 134752640 -9529849 - AluSx SINE Alu -12 300 1 292 179 75 0 chr12 134752653 134752720 -9529769 + MLT1J1 LTR MaLR 248 319 -127 1283 129 0 10 chr12 134753197 134753390 -9529099 + AluSg/x SINE Alu 106 296 -14 2291 77 0 13 chr12 134753723 134754022 -9528467 + AluSg SINE Alu 1 295 -15 279 0 0 0 chr12 134756260 134756291 -9526198 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 745 179 0 22 chr12 134756600 134756734 -9525755 - FLAM_A SINE Alu -2 131 1 1652 167 11 7 chr12 134756792 134757067 -9525422 - AluJo SINE Alu -36 276 1 559 169 0 0 chr12 134757330 134757419 -9525070 + AluSx SINE Alu 2 90 -222 2061 129 114 58 chr12 134757419 134757867 -9524622 - LTR21A LTR ERV1 -32 473 1 1606 114 0 0 chr12 134757867 134758095 -9524394 + AluSx SINE Alu 71 298 -12 275 272 119 60 chr12 134758405 134758740 -9523749 + L1ME4a LINE L1 5755 6109 -12 24 67 0 0 chr12 134758883 134758928 -9523561 + AT_rich Low_complexity Low_complexity 1 45 0 305 261 0 34 chr12 134758952 134759040 -9523449 + L1MB8 LINE L1 5520 5604 -517 1105 157 9 28 chr12 134759041 134759093 -9523396 + AluSx SINE Alu 83 134 -176 2001 121 7 3 chr12 134759093 134759390 -9523099 + AluSx SINE Alu 1 298 -14 1105 157 9 28 chr12 134759390 134759553 -9522936 + AluSx SINE Alu 134 294 -16 1843 168 3 0 chr12 134759738 134760048 -9522441 + AluJb SINE Alu 1 311 -1 1320 206 38 15 chr12 134760050 134760139 -9522350 + L1MB8 LINE L1 5769 5854 -324 2297 95 0 0 chr12 134760139 134760445 -9522044 - AluSx SINE Alu -2 310 5 1320 206 38 15 chr12 134760445 134760675 -9521814 + L1MB8 LINE L1 5854 6094 -84 1979 129 7 0 chr12 134760678 134760973 -9521516 - AluSx SINE Alu -15 297 1 2001 109 27 0 chr12 134761232 134761526 -9520963 + AluSc SINE Alu 1 302 -7 403 154 0 144 chr12 134761907 134762011 -9520478 - AluSg/x SINE Alu -139 173 85 2104 123 0 0 chr12 134762033 134762326 -9520163 - AluSx SINE Alu -19 293 1 386 272 124 42 chr12 134762334 134762551 -9519938 - HAL1 LINE L1 -948 1559 1325 695 198 101 16 chr12 134762581 134762839 -9519650 - HAL1 LINE L1 -1249 1258 979 369 62 0 0 chr12 134762890 134762938 -9519551 + (TCCCC)n Simple_repeat Simple_repeat 5 52 0 1855 170 6 6 chr12 134762960 134763272 -9519217 - AluJb SINE Alu 0 312 1 582 256 145 60 chr12 134764042 134764393 -9518096 - MLT1K LTR MaLR 0 588 208 2008 131 0 0 chr12 134764825 134765115 -9517374 + AluJb SINE Alu 1 290 -22 3376 224 55 17 chr12 134765131 134765969 -9516520 - L1MB4 LINE L1 -6 6174 5305 1093 148 37 42 chr12 134765998 134766215 -9516274 + AluJb SINE Alu 89 304 -8 1536 145 100 85 chr12 134766561 134766630 -9515859 - L1MB7 LINE L1 -10 6174 6108 1599 127 135 0 chr12 134766630 134766890 -9515599 + AluSx SINE Alu 1 295 -7 1536 145 100 85 chr12 134766890 134767220 -9515269 - L1MB7 LINE L1 -76 6108 5769 243 0 0 0 chr12 134767232 134767259 -9515230 + (TG)n Simple_repeat Simple_repeat 2 28 0 207 0 0 0 chr12 134767273 134767296 -9515193 + (CA)n Simple_repeat Simple_repeat 2 24 0 1836 86 0 4 chr12 134767462 134767705 -9514784 + AluSq SINE Alu 1 242 -71 326 246 35 61 chr12 134767743 134767857 -9514632 - L1MC4 LINE L1 -1317 6725 6615 291 271 8 15 chr12 134767860 134767993 -9514496 + (TA)n Simple_repeat Simple_repeat 2 133 0 218 269 43 0 chr12 134767954 134768047 -9514442 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 * 292 325 8 16 chr12 134768839 134768965 -9513524 + L2 LINE L2 2037 2161 -1153 257 248 44 53 chr12 134769154 134769252 -9513237 - MER45 DNA AcHobo 0 1581 1483 1767 172 10 0 chr12 134769252 134769560 -9512929 + AluJb SINE Alu 1 311 -1 257 248 44 53 chr12 134769560 134769574 -9512915 - MER45 DNA AcHobo -98 1483 1470 2176 99 10 0 chr12 134769574 134769868 -9512621 + AluSg SINE Alu 1 297 -13 523 175 193 9 chr12 134769869 134769983 -9512506 - MER45B DNA AcHobo -273 767 633 192 77 0 0 chr12 134769983 134770009 -9512480 + (TG)n Simple_repeat Simple_repeat 1 26 0 1786 100 0 0 chr12 134770009 134770250 -9512239 - AluSx SINE Alu -31 281 41 207 200 40 0 chr12 134770262 134770312 -9512177 - L2 LINE L2 -363 2951 2900 1576 158 6 46 chr12 134771448 134771771 -9510718 + AluJb SINE Alu 1 310 -2 1459 173 30 8 chr12 134772173 134772439 -9510050 - AluJb SINE Alu -3 309 38 1733 255 145 49 chr12 134772449 134773057 -9509432 - HAL1 LINE L1 -5 2502 1773 2184 117 0 3 chr12 134773057 134773366 -9509123 - AluSq SINE Alu -5 308 1 1733 255 145 49 chr12 134773366 134773681 -9508808 - HAL1 LINE L1 -734 1773 1490 280 257 106 99 chr12 134773788 134773947 -9508542 - HAL1 LINE L1 -2167 340 177 2257 81 0 0 chr12 134773947 134774243 -9508246 - AluY SINE Alu -15 296 1 280 257 106 99 chr12 134774243 134774375 -9508114 - HAL1 LINE L1 -2330 177 47 250 349 71 16 chr12 134775025 134775151 -9507338 - L2 LINE L2 -4 3268 3136 1866 158 0 3 chr12 134775170 134775467 -9507022 + AluJo SINE Alu 2 297 -15 2231 93 6 3 chr12 134775471 134775782 -9506707 + AluSx SINE Alu 1 312 0 1778 190 82 49 chr12 134775878 134776367 -9506122 - MLT1D LTR MaLR 0 505 1 1140 154 45 10 chr12 134776420 134776621 -9505868 + L1MA2 LINE L1 6097 6304 0 1908 139 0 0 chr12 134776781 134777083 -9505406 + AluSx SINE Alu 1 302 -10 2225 87 0 3 chr12 134777479 134777777 -9504712 - AluY SINE Alu -14 297 1 2089 127 0 13 chr12 134777987 134778303 -9504186 - AluJb SINE Alu 0 312 1 967 204 42 56 chr12 134778462 134778747 -9503742 - MER58B DNA MER1_type 0 341 61 2134 162 89 2 chr12 134778819 134779213 -9503276 - MSTA LTR MaLR 0 428 1 209 138 0 35 chr12 134779284 134779342 -9503147 + (TTATA)n Simple_repeat Simple_repeat 3 58 0 230 226 53 8 chr12 134779349 134779430 -9503059 + (TA)n Simple_repeat Simple_repeat 2 93 -47 2306 90 3 0 chr12 134779430 134779730 -9502759 + AluSx SINE Alu 1 301 -11 230 226 53 8 chr12 134779730 134779781 -9502708 + (TA)n Simple_repeat Simple_repeat 93 140 0 182 290 21 32 chr12 134779897 134779990 -9502499 + L3 LINE CR1 1311 1402 -175 201 232 54 36 chr12 134780185 134780241 -9502248 + MIR SINE MIR 86 142 -120 455 259 63 14 chr12 134780558 134780701 -9501788 - MER102a DNA MER1_type -157 173 24 590 182 0 33 chr12 134781025 134781146 -9501343 - Charlie1 DNA MER1_type -11 2750 2634 937 162 30 0 chr12 134781148 134781315 -9501174 + AluJb SINE Alu 138 309 -3 487 178 55 31 chr12 134781315 134781343 -9501146 - Charlie1 DNA MER1_type -117 2644 2618 2266 95 0 0 chr12 134781343 134781639 -9500850 + AluSg SINE Alu 1 296 -14 487 178 55 31 chr12 134781639 134781773 -9500716 - Charlie1 DNA MER1_type -143 2618 2478 4250 192 47 46 chr12 134782293 134782910 -9499579 - L1MD1 LINE L1 0 6242 5627 2063 126 0 0 chr12 134782910 134783212 -9499277 - AluSq SINE Alu -11 302 1 4250 192 47 46 chr12 134783212 134783848 -9498641 - L1MD1 LINE L1 -615 5627 4977 180 0 0 0 chr12 134784242 134784262 -9498227 + (TTTC)n Simple_repeat Simple_repeat 3 22 0 200 200 18 0 chr12 134784477 134784532 -9497957 + (TA)n Simple_repeat Simple_repeat 2 57 0 571 140 0 0 chr12 134784658 134784751 -9497738 - FLAM_A SINE Alu -3 139 47 2392 57 0 10 chr12 134784850 134785149 -9497340 + AluY SINE Alu 1 296 -15 2478 65 0 0 chr12 134786372 134786682 -9495807 - AluY SINE Alu -1 310 1 568 258 8 0 chr12 134786927 134787051 -9495438 - MIR SINE MIR -109 153 29 2273 84 0 3 chr12 134787375 134787674 -9494815 - AluY SINE Alu -13 298 1 779 131 7 0 chr12 134787707 134787844 -9494645 + (TCCA)n Simple_repeat Simple_repeat 1 138 0 375 316 139 41 chr12 134787893 134788340 -9494149 - L2 LINE L2 -84 3229 2722 596 174 0 51 chr12 134788343 134788699 -9493790 + GA-rich Low_complexity Low_complexity 1 338 0 1447 83 0 5 chr12 134788853 134789045 -9493444 + AluSg/x SINE Alu 111 301 -9 255 179 164 0 chr12 134789046 134789113 -9493376 + L1MC5 LINE L1 7706 7783 -178 477 251 160 34 chr12 134789208 134789471 -9493018 + L1ME4a LINE L1 5813 6108 -13 2172 87 0 7 chr12 134790019 134790306 -9492183 - AluSc SINE Alu -22 287 3 189 276 26 103 chr12 134791230 134791346 -9491143 - L2 LINE L2 -2355 959 853 552 212 29 36 chr12 134791457 134791594 -9490895 + L2 LINE L2 3137 3272 0 188 222 14 97 chr12 134791629 134791701 -9490788 - L2 LINE L2 -90 3223 3158 353 261 144 48 chr12 134791853 134792144 -9490345 + L2 LINE L2 2918 3236 -77 239 289 8 23 chr12 134792682 134792810 -9489679 + (CCG)n Simple_repeat Simple_repeat 1 126 0 213 39 0 0 chr12 134793018 134793044 -9489445 + (TG)n Simple_repeat Simple_repeat 1 26 0 1839 102 3 14 chr12 134793059 134793344 -9489145 - AluSx SINE Alu -30 282 1 1661 135 17 21 chr12 134793354 134793643 -9488846 - AluJb SINE Alu -22 290 3 266 305 78 18 chr12 134793674 134793841 -9488648 - L1MB8 LINE L1 -94 6084 5908 567 246 137 6 chr12 134793971 134794154 -9488335 + L2 LINE L2 3107 3313 0 1984 130 3 7 chr12 134794344 134794651 -9487838 + AluSq SINE Alu 1 306 -7 2441 69 0 0 chr12 134794886 134795190 -9487299 + AluY SINE Alu 1 304 -7 1699 142 26 48 chr12 134795463 134795774 -9486715 + AluJb SINE Alu 1 304 -8 1393 142 42 71 chr12 134795976 134796286 -9486203 + AluJo SINE Alu 1 301 -11 1633 133 70 0 chr12 134796813 134797098 -9485391 + AluSx SINE Alu 1 305 -7 1944 92 50 0 chr12 134797098 134797379 -9485110 + AluSq SINE Alu 1 295 -18 1725 135 39 0 chr12 134797568 134797849 -9484640 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr12 134797970 134797992 -9484497 + AT_rich Low_complexity Low_complexity 1 22 0 1391 269 77 40 chr12 134798829 134799050 -9483439 + MLT1K LTR MaLR 50 261 -327 2196 107 3 0 chr12 134799050 134799358 -9483131 + AluSp SINE Alu 1 309 -4 1391 269 77 40 chr12 134799358 134799642 -9482847 + MLT1K LTR MaLR 261 574 -14 2249 97 0 0 chr12 134799645 134799944 -9482545 + AluSc SINE Alu 1 299 -10 552 191 95 0 chr12 134799969 134800095 -9482394 - MIR SINE MIR -111 151 14 2257 80 3 0 chr12 134800802 134801101 -9481388 + AluSc SINE Alu 1 300 -9 1445 189 13 33 chr12 134801316 134801622 -9480867 + AluJb SINE Alu 1 300 -12 2173 84 21 3 chr12 134801624 134801911 -9480578 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr12 134801916 134801946 -9480543 + AT_rich Low_complexity Low_complexity 1 30 0 224 250 58 0 chr12 134803039 134803091 -9479398 + MIR SINE MIR 43 97 -111 2302 57 0 17 chr12 134803348 134803649 -9478840 - AluY SINE Alu -15 296 1 1516 166 52 10 chr12 134803674 134803982 -9478507 - L1MB8 LINE L1 0 6178 5858 234 105 0 0 chr12 134804118 134804156 -9478333 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1580 178 0 34 chr12 134804158 134804375 -9478114 - AluJo SINE Alu -30 282 76 2134 97 7 10 chr12 134804375 134804685 -9477804 + AluSg SINE Alu 1 309 -1 1580 178 0 34 chr12 134804685 134804759 -9477730 - AluJo SINE Alu -236 76 1 1767 164 3 25 chr12 134804787 134805104 -9477385 + AluJb SINE Alu 1 310 -2 1975 144 0 3 chr12 134805651 134805950 -9476539 + AluJb SINE Alu 1 298 -14 1592 183 27 3 chr12 134806375 134806670 -9475819 + AluJb SINE Alu 1 302 -10 373 171 13 0 chr12 134806673 134806749 -9475740 + L1MB5 LINE L1 5419 5495 -676 842 206 0 32 chr12 134806753 134806764 -9475725 + AluJb SINE Alu 118 128 -184 2198 109 3 0 chr12 134806764 134807068 -9475421 + AluSp SINE Alu 1 305 -8 842 206 0 32 chr12 134807068 134807245 -9475244 + AluJb SINE Alu 128 300 -12 1831 122 35 14 chr12 134807312 134807599 -9474890 + AluSx SINE Alu 1 293 -19 2159 114 0 0 chr12 134808962 134809259 -9473230 + AluSq SINE Alu 1 297 -16 839 129 7 29 chr12 134809289 134809428 -9473061 + AluSx SINE Alu 1 136 -177 1186 135 0 0 chr12 134809504 134809696 -9472793 + AluSx SINE Alu 121 312 0 310 307 0 11 chr12 134810493 134810581 -9471908 + L2 LINE L2 3184 3270 -2 1905 115 0 17 chr12 134810706 134810813 -9471676 + AluSx SINE Alu 30 137 -175 2058 111 13 3 chr12 134810813 134811120 -9471369 + AluSg SINE Alu 1 310 0 1905 115 0 17 chr12 134811120 134811300 -9471189 + AluSx SINE Alu 137 312 0 2102 107 3 7 chr12 134811352 134811651 -9470838 + AluSx SINE Alu 1 298 -14 216 135 0 0 chr12 134811708 134811745 -9470744 + (A)n Simple_repeat Simple_repeat 1 37 0 2326 90 3 0 chr12 134811780 134812090 -9470399 + AluSp SINE Alu 1 311 -2 3269 158 30 13 chr12 134812713 134812761 -9469728 + L1MB5 LINE L1 5533 5579 -595 2180 99 10 16 chr12 134812761 134812895 -9469594 + AluSx SINE Alu 1 134 -178 2139 77 0 51 chr12 134812895 134813207 -9469282 + AluSq SINE Alu 1 296 -17 2180 99 10 16 chr12 134813207 134813386 -9469103 + AluSx SINE Alu 134 312 0 3269 158 30 13 chr12 134813386 134813937 -9468552 + L1MB5 LINE L1 5579 6142 -32 1776 130 0 0 chr12 134813941 134814195 -9468294 + AluSq SINE Alu 5 258 -55 1778 154 4 4 chr12 134815006 134815286 -9467203 + AluJo SINE Alu 1 280 -32 1157 118 16 5 chr12 134815414 134815600 -9466889 + L1PA13 LINE L1 5976 6163 0 592 176 59 8 chr12 134815625 134815744 -9466745 + AluJb SINE Alu 1 125 -187 1586 157 26 38 chr12 134815750 134816063 -9466426 + AluJb SINE Alu 1 309 -3 2208 80 3 3 chr12 134816063 134816351 -9466138 + AluSp SINE Alu 14 301 -12 1965 114 3 10 chr12 134816591 134816897 -9465592 + AluSc SINE Alu 1 304 -5 1840 144 3 7 chr12 134817120 134817425 -9465064 - AluSx SINE Alu -8 304 1 2244 67 17 0 chr12 134817432 134817730 -9464759 - AluY SINE Alu -8 303 1 1908 128 3 0 chr12 134818759 134819069 -9463420 + AluSx SINE Alu 1 311 0 1518 174 7 30 chr12 134819082 134819387 -9463102 + AluJo SINE Alu 8 305 -7 2174 103 0 0 chr12 134819387 134819679 -9462810 + AluSx SINE Alu 1 292 -20 2118 98 0 3 chr12 134820040 134820336 -9462153 - AluSc SINE Alu -14 295 1 2017 139 3 0 chr12 134820406 134820709 -9461780 + AluSx SINE Alu 1 304 -8 860 165 19 93 chr12 134820759 134821015 -9461474 + L1MA10 LINE L1 6096 6334 0 2070 103 0 7 chr12 134821167 134821457 -9461032 + AluSg SINE Alu 1 288 -22 1661 175 7 3 chr12 134821526 134821835 -9460654 + AluSx SINE Alu 1 310 -2 1983 99 4 0 chr12 134821876 134822148 -9460341 - AluSx SINE Alu -23 289 17 2521 46 0 0 chr12 134822324 134822626 -9459863 + AluY SINE Alu 1 302 -9 1879 167 0 7 chr12 134822699 134823004 -9459485 + AluJb SINE Alu 1 303 -9 2314 78 0 0 chr12 134823266 134823559 -9458930 + AluY SINE Alu 1 293 -18 1036 93 0 0 chr12 134823775 134823914 -9458575 + AluSq/x SINE Alu 1 139 -173 1126 225 16 0 chr12 134823923 134824167 -9458322 - MER33 DNA MER1_type -76 248 1 258 255 69 69 chr12 134824201 134824432 -9458057 - L2 LINE L2 -57 3215 2985 885 87 0 16 chr12 134824433 134824560 -9457929 + AluSp SINE Alu 1 125 -188 1776 149 0 33 chr12 134825173 134825474 -9457015 - AluJb SINE Alu -21 291 1 2506 64 0 0 chr12 134825765 134826076 -9456413 - AluY SINE Alu 0 311 1 1680 153 10 3 chr12 134826076 134826364 -9456125 - AluJb SINE Alu -22 290 1 344 258 261 8 chr12 134826515 134826783 -9455706 - L1MC4a LINE L1 -1642 6166 5831 1715 173 0 19 chr12 134827185 134827498 -9454991 + AluJb SINE Alu 1 307 -5 1153 163 37 5 chr12 134827532 134827747 -9454742 - AluJo SINE Alu -90 222 1 2117 108 3 0 chr12 134827796 134828092 -9454397 + AluSc SINE Alu 2 298 -11 224 243 0 14 chr12 134828167 134828237 -9454252 + A-rich Low_complexity Low_complexity 2 70 0 758 105 0 177 chr12 134828333 134828514 -9453975 - AluJb SINE Alu 0 312 164 2253 76 7 0 chr12 134829304 134829594 -9452895 - AluSx SINE Alu -20 292 1 1611 132 22 64 chr12 134829597 134829908 -9452581 - AluJo SINE Alu -13 299 2 294 239 104 80 chr12 134830366 134830529 -9451960 + MIR SINE MIR 36 202 -60 913 128 54 0 chr12 134831365 134831513 -9450976 + L1PA15 LINE L1 6002 6157 -8 43 0 0 0 chr12 134831760 134831803 -9450686 + AT_rich Low_complexity Low_complexity 1 43 0 319 232 11 53 chr12 134831827 134831873 -9450616 - L1MC4 LINE L1 -1339 6703 6661 2042 101 0 3 chr12 134831873 134832159 -9450330 + AluSg SINE Alu 1 285 -25 319 232 11 53 chr12 134832159 134832207 -9450282 - L1MC4 LINE L1 -1381 6661 6613 41 66 0 0 chr12 134832212 134832288 -9450201 + AT_rich Low_complexity Low_complexity 1 76 0 248 196 0 18 chr12 134832288 134832344 -9450145 + (TTA)n Simple_repeat Simple_repeat 2 56 0 890 251 28 43 chr12 134832532 134832787 -9449702 + MIR SINE MIR 9 259 -3 183 351 53 0 chr12 134832796 134832890 -9449599 + MIR SINE MIR 164 262 0 1966 119 27 10 chr12 134832894 134833189 -9449300 - AluJo SINE Alu -12 300 1 1917 133 3 3 chr12 134833582 134833882 -9448607 + AluSx SINE Alu 1 300 -12 3551 132 13 4 chr12 134833882 134834412 -9448077 + MER50 LTR ERV1 177 711 -23 386 209 0 0 chr12 134834412 134834479 -9448010 + L1M1 LINE L1 1816 1882 -5683 * 4969 161 68 27 chr12 134834472 134835091 -9447398 + L1M1 LINE L1 3115 3707 -3858 781 169 0 63 chr12 134835091 134835233 -9447256 + FLAM_C SINE Alu 1 133 0 2007 129 0 13 chr12 134835237 134835373 -9447116 + AluSx SINE Alu 1 137 -175 2300 83 0 3 chr12 134835373 134835675 -9446814 + AluY SINE Alu 1 301 -10 2007 129 0 13 chr12 134835675 134835841 -9446648 + AluSx SINE Alu 137 299 -13 4969 161 68 27 chr12 134835841 134836233 -9446256 + L1M1 LINE L1 3709 4084 -3481 2133 104 3 3 chr12 134836233 134836530 -9445959 - AluSx SINE Alu -15 297 1 4969 161 68 27 chr12 134836530 134836674 -9445815 + L1M1 LINE L1 4084 4221 -3344 2282 87 0 3 chr12 134836674 134836974 -9445515 - AluSc SINE Alu -10 299 1 4969 161 68 27 chr12 134836974 134837197 -9445292 + L1M1 LINE L1 4221 4434 -3131 2116 110 0 3 chr12 134837197 134837497 -9444992 + AluSx SINE Alu 11 309 -3 4969 161 68 27 chr12 134837497 134837730 -9444759 + L1M1 LINE L1 4434 4804 -2761 2018 139 7 0 chr12 134837730 134838040 -9444449 + AluSx SINE Alu 1 312 0 3259 152 12 67 chr12 134838040 134838132 -9444357 + L1M1 LINE L1 5116 5211 -2354 2115 108 0 13 chr12 134838132 134838447 -9444042 + AluSx SINE Alu 1 311 -1 3259 152 12 67 chr12 134838447 134838460 -9444029 + L1M1 LINE L1 5211 5223 -2342 2073 117 0 7 chr12 134838460 134838760 -9443729 + AluSq SINE Alu 4 301 -12 3259 152 12 67 chr12 134838760 134839321 -9443168 + L1M1 LINE L1 5223 5748 -1817 1842 156 0 0 chr12 134839321 134839609 -9442880 - AluJb SINE Alu -18 294 7 27 29 0 0 chr12 134839766 134839800 -9442689 + AT_rich Low_complexity Low_complexity 1 34 0 1661 78 4 67 chr12 134840206 134840461 -9442028 - AluSq SINE Alu -9 304 66 963 117 0 0 chr12 134840477 134840622 -9441867 + AluY SINE Alu 159 303 -8 593 83 48 0 chr12 134840623 134840707 -9441782 - AluSg SINE Alu -219 91 4 2072 116 0 0 chr12 134840710 134841002 -9441487 - AluSg SINE Alu -18 292 1 776 125 0 0 chr12 134841222 134841334 -9441155 - FLAM_C SINE Alu -12 131 20 1426 103 10 0 chr12 134842975 134843179 -9439310 - AluSg/x SINE Alu -7 303 98 1927 192 37 7 chr12 134843179 134843671 -9438818 - L1M4 LINE L1 -562 5622 5118 1550 174 11 18 chr12 134843733 134843868 -9438621 + AluJb SINE Alu 3 137 -175 1731 100 103 7 chr12 134843868 134844139 -9438350 + AluSq SINE Alu 1 297 -16 1550 174 11 18 chr12 134844139 134844315 -9438174 + AluJb SINE Alu 137 312 0 1078 277 168 27 chr12 134844606 134845140 -9437349 - L2 LINE L2 -48 3265 2808 472 123 0 37 chr12 134845140 134845221 -9437268 - MADE1 DNA Mariner 0 80 3 1078 277 168 27 chr12 134845221 134845272 -9437217 - L2 LINE L2 -505 2808 2766 1554 140 56 28 chr12 134845272 134845558 -9436931 - AluJo SINE Alu -18 294 1 1078 277 168 27 chr12 134845558 134845913 -9436576 - L2 LINE L2 -547 2766 2181 351 298 71 7 chr12 134846176 134846317 -9436172 + HAL1b LINE L1 951 1100 -248 721 204 29 0 chr12 134846326 134846498 -9435991 - Charlie5 DNA MER1_type 0 2623 2447 298 366 181 0 chr12 134846631 134846852 -9435637 - MIR SINE MIR 0 262 2 478 244 35 0 chr12 134847670 134847842 -9434647 + (CA)n Simple_repeat Simple_repeat 2 179 0 423 233 47 6 chr12 134847881 134848053 -9434436 + (CA)n Simple_repeat Simple_repeat 2 180 0 211 195 44 0 chr12 134848161 134848274 -9434215 + (CA)n Simple_repeat Simple_repeat 2 119 0 453 300 104 19 chr12 134848403 134848663 -9433826 - L1ME LINE L1 -375 5746 5465 2142 73 42 0 chr12 134848697 134848983 -9433506 - AluY SINE Alu -13 298 1 397 268 94 49 chr12 134849093 134849247 -9433242 - L1ME LINE L1 -1617 4529 4360 2154 94 0 53 chr12 134849247 134849567 -9432922 - AluSx SINE Alu -9 303 1 397 268 94 49 chr12 134849567 134849636 -9432853 - L1ME LINE L1 -1786 4360 4296 2364 76 0 3 chr12 134850521 134850825 -9431664 - AluY SINE Alu -8 303 1 1891 105 18 11 chr12 134850872 134851149 -9431340 + AluSx SINE Alu 21 299 -13 1147 146 19 24 chr12 134851587 134851800 -9430689 + L1MB3 LINE L1 5970 6181 -2 586 270 61 0 chr12 134852295 134852443 -9430046 + MER5A DNA MER1_type 1 157 -32 749 207 72 51 chr12 134852443 134852680 -9429809 - L1MB8 LINE L1 0 6178 5937 240 179 0 0 chr12 134852680 134852719 -9429770 + MER5A DNA MER1_type 148 186 -3 282 271 135 15 chr12 134852735 134852868 -9429621 - L2 LINE L2 -559 2755 2607 1106 183 40 0 chr12 134852870 134853072 -9429417 + MER20 DNA MER1_type 1 210 -9 2074 98 0 14 chr12 134853094 134853389 -9429100 + AluSq SINE Alu 1 291 -22 918 127 0 0 chr12 134853409 134853543 -9428946 + AluJo SINE Alu 1 134 -178 468 333 177 24 chr12 134853554 134854091 -9428398 - L2 LINE L2 -749 2565 1947 1872 112 24 30 chr12 134854880 134855175 -9427314 - AluSx SINE Alu -19 293 1 2360 69 0 7 chr12 134855190 134855493 -9426996 - AluY SINE Alu -10 301 1 1801 157 0 16 chr12 134855801 134856107 -9426382 + AluJo SINE Alu 1 301 -11 1631 192 3 0 chr12 134856993 134857290 -9425199 + AluJb SINE Alu 1 298 -14 2225 85 0 0 chr12 134857684 134857977 -9424512 - AluSc SINE Alu -16 293 1 407 162 14 0 chr12 134858084 134858158 -9424331 - U3 snRNA snRNA -142 75 1 1767 134 40 0 chr12 134858239 134858516 -9423973 + AluSx SINE Alu 1 288 -24 391 281 98 41 chr12 134858567 134858933 -9423556 + L1ME2 LINE L1 5155 5388 -758 1166 179 53 80 chr12 134858948 134859185 -9423304 + MER63 DNA MER1_type 1 230 -831 1986 110 10 20 chr12 134859185 134859484 -9423005 + AluSx SINE Alu 1 296 -16 1166 179 53 80 chr12 134859484 134859548 -9422941 + MER63 DNA MER1_type 230 294 -767 386 284 66 20 chr12 134859590 134859787 -9422702 + L1MEc LINE L1 2188 2393 -4328 445 211 22 0 chr12 134859787 134859877 -9422612 + MLT1C LTR MaLR 1 92 -375 2123 127 0 0 chr12 134859894 134860201 -9422288 + AluSg SINE Alu 1 307 -3 2080 109 0 7 chr12 134860209 134860525 -9421964 + AluSq SINE Alu 1 313 0 338 286 20 20 chr12 134860535 134860749 -9421740 + L1MEc LINE L1 2419 2595 -3945 424 149 0 0 chr12 134860761 134860835 -9421654 + Alu SINE Alu 233 306 -4 2081 108 3 0 chr12 134860848 134861134 -9421355 + AluSx SINE Alu 12 298 -14 925 163 0 0 chr12 134861182 134861342 -9421147 - FRAM SINE Alu -1 175 16 434 212 10 0 chr12 134861349 134861448 -9421041 + L1MEc LINE L1 3023 3122 -3418 1137 172 105 4 chr12 134861456 134861694 -9420795 - MER58B DNA MER1_type 0 341 80 2281 90 0 3 chr12 134861725 134862025 -9420464 + AluSq SINE Alu 1 299 -14 291 188 59 35 chr12 134862051 134862136 -9420353 + L1ME2 LINE L1 5907 5993 -171 1285 133 0 5 chr12 134862203 134862398 -9420091 + AluSx SINE Alu 1 194 -118 739 236 78 54 chr12 134862403 134862661 -9419828 + L1MD2 LINE L1 6084 6347 -12 823 254 54 18 chr12 134862681 134862960 -9419529 + L1MB7 LINE L1 5896 6184 0 2485 50 0 0 chr12 134863268 134863570 -9418919 + AluY SINE Alu 1 302 -9 610 180 23 23 chr12 134863624 134863752 -9418737 + L2 LINE L2 3180 3307 -6 1599 164 0 21 chr12 134863753 134863892 -9418597 + AluJb SINE Alu 1 141 -173 1945 117 0 39 chr12 134863892 134864199 -9418290 + AluSx SINE Alu 1 295 -17 1599 164 0 21 chr12 134864199 134864379 -9418110 + AluJb SINE Alu 141 314 0 1974 90 7 14 chr12 134864587 134864866 -9417623 + AluSx SINE Alu 28 304 -8 668 152 15 45 chr12 134864966 134865098 -9417391 - FLAM_A SINE Alu -5 137 10 196 253 241 13 chr12 134865137 134865216 -9417273 - L2 LINE L2 -51 3262 3166 1597 134 41 58 chr12 134865283 134865432 -9417057 - AluJo SINE Alu -25 287 144 2330 71 3 0 chr12 134865432 134865726 -9416763 - AluSp SINE Alu -18 295 1 1597 134 41 58 chr12 134865726 134865868 -9416621 - AluJo SINE Alu -168 144 1 452 178 103 75 chr12 134866159 134866333 -9416156 + MER104 DNA MER2_type 1 179 -1 223 217 28 160 chr12 134866361 134866467 -9416022 - MIR SINE MIR -157 105 14 821 140 0 0 chr12 134866654 134866768 -9415721 + AluJo/FLAM SINE Alu 6 119 -193 2226 99 0 7 chr12 134866769 134867073 -9415416 - AluSx SINE Alu -10 302 1 205 324 10 39 chr12 134867255 134867357 -9415132 + MIR SINE MIR 127 225 -37 * 742 314 33 8 chr12 134867341 134867586 -9414903 + L2 LINE L2 2611 2861 -453 390 267 164 81 chr12 134867704 134867902 -9414587 + L2 LINE L2 2923 3103 -210 1688 140 10 3 chr12 134867902 134868194 -9414295 - AluJo SINE Alu -9 303 10 390 267 164 81 chr12 134868194 134868354 -9414135 + L2 LINE L2 3103 3311 -2 2630 17 0 0 chr12 134869398 134869697 -9412792 - AluYa5 SINE Alu -12 299 1 2102 106 13 16 chr12 134870062 134870374 -9412115 - AluSx SINE Alu -1 311 1 2024 120 0 17 chr12 134870375 134870538 -9411951 - AluSq SINE Alu -18 295 138 2288 71 3 0 chr12 134870538 134870835 -9411654 - AluY SINE Alu -13 298 1 2024 120 0 17 chr12 134870835 134870971 -9411518 - AluSq SINE Alu -175 138 1 193 296 42 42 chr12 134871213 134871284 -9411205 - L2 LINE L2 -13 3300 3230 404 115 0 33 chr12 134871529 134871590 -9410899 - AluJ/FLAM SINE Alu -252 60 2 720 242 6 25 chr12 134871599 134871760 -9410729 + L2 LINE L2 3156 3313 0 1134 182 11 71 chr12 134872209 134872478 -9410011 + MIR SINE MIR 10 262 0 2309 60 0 0 chr12 134872539 134872850 -9409639 - AluY SINE Alu 0 311 1 345 273 207 0 chr12 134873493 134873614 -9408875 - MER5A DNA MER1_type 0 189 44 1867 167 0 6 chr12 134873698 134874010 -9408479 + AluJb SINE Alu 1 310 -2 1301 171 0 20 chr12 134874052 134874304 -9408185 + AluJo SINE Alu 52 298 -14 301 281 84 31 chr12 134874331 134874498 -9407991 + MER102a DNA MER1_type 31 240 -1177 1794 164 0 23 chr12 134874498 134874797 -9407692 - AluJb SINE Alu -20 292 1 301 281 84 31 chr12 134874797 134874894 -9407595 + MER102a DNA MER1_type 240 330 0 2236 103 0 6 chr12 134876201 134876513 -9405976 - AluSx SINE Alu -2 310 1 1129 178 116 0 chr12 134876878 134877103 -9405386 + AluJb SINE Alu 47 297 -15 231 304 0 14 chr12 134877257 134877326 -9405163 - MER112 DNA MER1_type -176 84 17 1823 165 7 3 chr12 134877802 134878105 -9404384 + AluJo SINE Alu 1 304 -8 254 207 40 7 chr12 134878168 134878318 -9404171 + (TA)n Simple_repeat Simple_repeat 2 156 0 639 225 47 0 chr12 134878336 134878465 -9404024 - FRAM SINE Alu -41 135 1 1705 79 0 9 chr12 134878588 134878815 -9403674 + AluSq SINE Alu 1 225 -88 726 183 46 3 chr12 134878821 134878948 -9403541 - L1MC/D LINE L1 -552 5628 5496 2049 105 3 29 chr12 134878948 134879263 -9403226 - AluSq SINE Alu -6 307 1 726 183 46 3 chr12 134879263 134879281 -9403208 - L1MC/D LINE L1 -684 5496 5480 224 132 57 0 chr12 134879324 134879377 -9403112 + (TA)n Simple_repeat Simple_repeat 1 56 0 747 151 8 24 chr12 134879406 134879532 -9402957 - AluJb SINE Alu -187 125 2 418 297 143 11 chr12 134879981 134880156 -9402333 + MIR SINE MIR 48 245 -17 476 59 15 0 chr12 134881733 134881801 -9400688 + (TA)n Simple_repeat Simple_repeat 1 69 0 892 121 8 0 chr12 134881893 134882025 -9400464 - FLAM_C SINE Alu 0 133 1 306 233 92 50 chr12 134882642 134882762 -9399727 - L1MCa LINE L1 -4062 2364 2240 2356 57 0 3 chr12 134883059 134883355 -9399134 + AluY SINE Alu 1 295 -16 21 36 0 0 chr12 134883857 134883885 -9398604 + AT_rich Low_complexity Low_complexity 1 28 0 2360 54 17 0 chr12 134884050 134884346 -9398143 + AluSp SINE Alu 1 301 -12 336 271 109 49 chr12 134884841 134885191 -9397298 - L1ME4a LINE L1 -1 6120 5750 1589 138 53 18 chr12 134885208 134885490 -9396999 - AluJb SINE Alu -20 292 1 2195 71 7 0 chr12 134886347 134886659 -9395830 - AluY SINE Alu 0 314 1 201 310 88 9 chr12 134886903 134887016 -9395473 - L2 LINE L2 -280 2992 2871 237 159 330 23 chr12 134887880 134887968 -9394521 - MIR SINE MIR -60 148 34 677 151 162 28 chr12 134888123 134888302 -9394187 - MER112 DNA MER1_type -38 222 20 46 0 0 0 chr12 134888338 134888384 -9394105 + AT_rich Low_complexity Low_complexity 1 46 0 282 237 54 43 chr12 134888906 134888999 -9393490 + MLT1J LTR MaLR 399 492 -19 268 111 0 0 chr12 134888970 134889006 -9393483 + MLT1L LTR MaLR 569 604 -11 * 761 140 15 37 chr12 134889524 134889660 -9392829 - FLAM_C SINE Alu 0 133 1 410 281 37 30 chr12 134889676 134889811 -9392678 - MER5A DNA MER1_type -45 144 9 1388 159 13 13 chr12 134890091 134890318 -9392171 - MER46A DNA MER2_type -7 229 3 536 292 129 10 chr12 134890322 134890531 -9391958 - MIR SINE MIR -25 237 4 2112 120 3 3 chr12 134891163 134891471 -9391018 + AluSg SINE Alu 1 308 -2 2202 45 73 0 chr12 134891472 134891760 -9390729 + AluY SINE Alu 1 309 -2 368 236 64 0 chr12 134892506 134892616 -9389873 + L1ME4a LINE L1 5967 6083 -38 1619 196 10 3 chr12 134892690 134892991 -9389498 + AluJb SINE Alu 2 304 -8 1681 181 10 0 chr12 134893110 134893419 -9389070 + AluJb SINE Alu 1 312 0 244 312 96 57 chr12 134893814 134893891 -9388598 + MIR SINE MIR 2 75 -133 1043 220 23 14 chr12 134893891 134894109 -9388380 + MER58A DNA MER1_type 5 224 0 244 312 96 57 chr12 134894109 134894188 -9388301 + MIR SINE MIR 75 164 -44 661 241 89 67 chr12 134894194 134894510 -9387979 + MER102a DNA MER1_type 2 324 -6 1895 226 48 25 chr12 134895094 134895486 -9387003 + MER82 DNA MER2_type 1 475 -178 1850 123 55 3 chr12 134895486 134895779 -9386710 + AluJb SINE Alu 1 308 -4 1895 226 48 25 chr12 134895779 134895963 -9386526 + MER82 DNA MER2_type 475 653 0 809 151 0 0 chr12 134895990 134896116 -9386373 - FLAM_C SINE Alu -17 126 1 248 284 37 0 chr12 134896677 134896758 -9385731 + MIR3 SINE MIR 125 208 0 868 175 20 65 chr12 134896979 134897038 -9385451 + MER20 DNA MER1_type 29 89 -130 1546 172 16 26 chr12 134897038 134897346 -9385143 + AluJo SINE Alu 1 305 -7 868 175 20 65 chr12 134897346 134897486 -9385003 + MER20 DNA MER1_type 89 219 0 1300 183 68 10 chr12 134897498 134897793 -9384696 - MER33 DNA MER1_type -4 320 9 198 203 266 0 chr12 134897801 134897880 -9384609 + L2 LINE L2 3150 3249 -23 1075 212 124 12 chr12 134897976 134898235 -9384254 - AluJo SINE Alu -13 289 2 1996 123 11 0 chr12 134898261 134898546 -9383943 + AluSx SINE Alu 1 288 -24 197 33 33 0 chr12 134898551 134898581 -9383908 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 889 250 192 22 chr12 134898582 134898672 -9383817 + L2 LINE L2 2355 2428 -885 2236 85 3 3 chr12 134898672 134898979 -9383510 + AluSg1 SINE Alu 1 307 -2 889 250 192 22 chr12 134898979 134899692 -9382797 + L2 LINE L2 2428 3313 0 661 210 28 7 chr12 134899736 134899879 -9382610 - MIR SINE MIR -71 191 46 2209 39 7 0 chr12 134900817 134901131 -9381358 - AluY SINE Alu 0 316 1 193 231 0 0 chr12 134901131 134901170 -9381319 - L2 LINE L2 -5 3308 3270 3183 127 87 49 chr12 134901215 134901467 -9381022 + MER39B LTR ERV1 1 242 -411 1986 91 56 3 chr12 134901467 134901753 -9380736 + AluSg SINE Alu 1 301 -9 1790 126 29 4 chr12 134901760 134902073 -9380416 + AluSx SINE Alu 1 320 0 1932 101 42 10 chr12 134902073 134902361 -9380128 + AluSx SINE Alu 1 297 -15 3183 127 87 49 chr12 134902361 134902727 -9379762 + MER39B LTR ERV1 246 653 0 276 273 171 37 chr12 134902784 134902837 -9379652 + L2 LINE L2 3102 3147 -166 255 31 0 0 chr12 134902837 134902869 -9379620 + (CA)n Simple_repeat Simple_repeat 1 32 0 276 273 171 37 chr12 134902869 134903002 -9379487 + L2 LINE L2 3147 3313 0 1562 184 20 10 chr12 134903132 134903425 -9379064 + AluJb SINE Alu 1 296 -16 702 159 87 0 chr12 134903425 134903551 -9378938 + AluJb SINE Alu 159 295 -17 279 328 124 27 chr12 134903617 134903803 -9378686 + MIR SINE MIR 59 262 0 231 306 10 41 chr12 134903857 134903955 -9378534 + MIR SINE MIR 55 149 -59 23 0 0 0 chr12 134904443 134904466 -9378023 + AT_rich Low_complexity Low_complexity 1 23 0 1888 129 2 114 chr12 134905881 134906275 -9376214 - MER47A DNA MER2_type -1 365 16 1274 193 13 0 chr12 134906350 134906583 -9375906 - AluJo SINE Alu -41 271 36 223 255 96 75 chr12 134906598 134906692 -9375797 - MIR3 SINE MIR -28 180 85 2079 128 7 0 chr12 134907112 134907418 -9375071 - AluSx SINE Alu -4 308 1 28 29 0 0 chr12 134907424 134907459 -9375030 + AT_rich Low_complexity Low_complexity 1 35 0 2202 107 3 0 chr12 134907459 134907759 -9374730 - AluSp SINE Alu -12 301 1 631 210 40 0 chr12 134907761 134907885 -9374604 - FLAM_A SINE Alu -1 132 4 2349 74 0 0 chr12 134907931 134908228 -9374261 + AluY SINE Alu 1 297 -14 1381 158 3 49 chr12 134908281 134908565 -9373924 + AluJb SINE Alu 23 293 -19 1044 79 14 0 chr12 134908568 134908707 -9373782 + AluSc SINE Alu 1 141 -168 188 121 0 30 chr12 134908757 134908790 -9373699 - MIR SINE MIR -92 116 85 714 123 62 7 chr12 134908956 134909102 -9373387 + AluSg/x SINE Alu 144 297 -15 871 198 6 0 chr12 134909332 134909489 -9373000 - MER20 DNA MER1_type -56 163 6 2391 216 14 20 chr12 134912179 134912740 -9369749 - L1MB7 LINE L1 -5 6179 5622 771 150 39 0 chr12 134914017 134914144 -9368345 - FLAM_C SINE Alu -1 132 1 679 278 43 9 chr12 134914838 134915068 -9367421 - MLT1K LTR MaLR -7 581 344 242 269 115 0 chr12 134915149 134915253 -9367236 - MLT1K LTR MaLR -356 232 117 2061 123 7 7 chr12 134915903 134916213 -9366276 - AluJb SINE Alu -2 310 1 2901 219 14 9 chr12 134916273 134916912 -9365577 - L1MB7 LINE L1 -1 6183 5542 738 229 133 54 chr12 134916952 134917122 -9365367 - L1MC5 LINE L1 -60 7901 7746 1032 161 4 142 chr12 134917122 134917382 -9365107 - MER58A DNA MER1_type 0 224 1 738 229 133 54 chr12 134917382 134917595 -9364894 - L1MC5 LINE L1 -215 7746 7470 1799 165 0 9 chr12 134917595 134917910 -9364579 - AluJb SINE Alu 0 312 1 738 229 133 54 chr12 134917910 134918005 -9364484 - L1MC5 LINE L1 -491 7470 7384 * 829 221 70 20 chr12 134918003 134918247 -9364242 - HAL1 LINE L1 -1783 724 469 255 200 18 0 chr12 134918705 134918760 -9363729 - L1MC4 LINE L1 -155 7887 7832 1385 227 85 30 chr12 134918803 134919262 -9363227 - L1ME2 LINE L1 -10 6154 5671 337 320 70 16 chr12 134919781 134919909 -9362580 - L2 LINE L2 -1 3271 3137 2468 46 3 0 chr12 134920622 134920927 -9361562 + AluY SINE Alu 1 306 -5 332 313 30 53 chr12 134925822 134925953 -9356536 + L2 LINE L2 3185 3312 -1 847 219 33 0 chr12 134927182 134927392 -9355097 - MER20 DNA MER1_type -2 217 1 619 267 184 5 chr12 134928438 134928655 -9353834 + MIR SINE MIR 1 256 -6 213 369 90 33 chr12 134929064 134929186 -9353303 - L2 LINE L2 -6 3266 3138 483 274 102 6 chr12 134930208 134930365 -9352124 - L2 LINE L2 -47 3266 3095 292 196 0 0 chr12 134930521 134930534 -9351955 + MER3 DNA MER1_type 35 47 -162 490 197 107 0 chr12 134930534 134930656 -9351833 - MER3 DNA MER1_type 0 209 75 198 257 149 0 chr12 134930682 134930756 -9351733 + MIR SINE MIR 107 191 -71 1955 117 35 0 chr12 134930779 134931061 -9351428 + AluSx SINE Alu 1 292 -20 430 158 40 0 chr12 134931078 134931154 -9351335 - MER3 DNA MER1_type -126 83 5 519 273 43 37 chr12 134931168 134931355 -9351134 - MIR SINE MIR -73 189 2 185 289 62 101 chr12 134931949 134932031 -9350458 + MIR SINE MIR 63 147 -115 2145 89 3 0 chr12 134932031 134932333 -9350156 + AluSp SINE Alu 1 303 0 185 289 62 101 chr12 134932333 134932385 -9350104 + MIR SINE MIR 147 199 -63 2003 113 33 10 chr12 134932385 134932687 -9349802 + AluSx SINE Alu 1 309 -3 185 289 62 101 chr12 134932687 134932758 -9349731 + MIR SINE MIR 199 262 0 596 164 0 69 chr12 134934618 134934734 -9347755 + FLAM_A SINE Alu 18 125 -17 1079 94 0 0 chr12 134936398 134936577 -9345912 - AluSq SINE Alu 0 312 134 2124 119 0 0 chr12 134936577 134936887 -9345602 - AluY SINE Alu -1 310 1 432 305 127 5 chr12 134937294 134937491 -9344998 - MIR SINE MIR -26 236 16 243 203 34 34 chr12 134938217 134938276 -9344213 - MIR SINE MIR 0 262 204 310 310 20 20 chr12 134938417 134938517 -9343972 + MIR3 SINE MIR 109 208 0 198 286 17 67 chr12 134939240 134939359 -9343130 - L2 LINE L2 -250 3022 2910 24 0 0 0 chr12 134939857 134939881 -9342608 + GC_rich Low_complexity Low_complexity 1 24 0 384 307 201 15 chr12 134940287 134940362 -9342127 + L2 LINE L2 2318 2378 -936 1870 136 146 31 chr12 134940362 134940745 -9341744 - MSTC LTR MaLR 0 428 2 384 307 201 15 chr12 134940745 134941073 -9341416 + L2 LINE L2 2378 2796 -518 236 285 196 31 chr12 134941330 134941621 -9340868 - L1ME LINE L1 -206 5915 5577 446 50 33 0 chr12 134942394 134942454 -9340035 - MER61E LTR ERV1 -506 63 2 2325 114 15 0 chr12 134942454 134942795 -9339694 + L1MB5 LINE L1 5829 6174 0 612 74 53 21 chr12 134942838 134942933 -9339556 + MER4A LTR ERV1 1 98 -566 1949 124 14 19 chr12 134942933 134943280 -9339209 + MER4A LTR ERV1 261 664 0 267 211 0 0 chr12 134943979 134944031 -9338458 - AluSp/q SINE Alu -10 293 242 828 126 0 0 chr12 134944031 134944150 -9338339 - AluSq/x SINE Alu -193 119 1 903 182 111 5 chr12 134944152 134944350 -9338139 - L1MD3 LINE L1 -315 7680 7462 238 242 45 0 chr12 134944414 134944480 -9338009 - L1MC/D LINE L1 -1986 5822 5754 1103 108 0 36 chr12 134944942 134945108 -9337381 + AluSg/x SINE Alu 138 297 -13 2297 217 27 4 chr12 134945121 134945963 -9336526 + L1MC/D LINE L1 4724 5589 -653 2086 105 3 19 chr12 134946008 134946321 -9336168 + AluSp SINE Alu 1 308 -5 370 248 144 16 chr12 134946324 134946449 -9336040 + MIR SINE MIR 49 189 -73 450 224 66 2 chr12 134946449 134946630 -9335859 + MER58A DNA MER1_type 1 224 0 2125 119 0 0 chr12 134946774 134947076 -9335413 - AluSg SINE Alu -8 302 1 313 204 80 169 chr12 134947195 134947211 -9335278 - L1MC4 LINE L1 0 8042 8026 2113 74 40 10 chr12 134947211 134947507 -9334982 - AluY SINE Alu -6 305 1 313 204 80 169 chr12 134947507 134947715 -9334774 - L1MC4 LINE L1 -16 8026 7838 5313 68 24 1 chr12 134947731 134948398 -9334091 - LTR8 LTR ERV1 -8 683 2 283 248 140 33 chr12 134948435 134948649 -9333840 - L1MC5 LINE L1 -273 7688 7452 2242 100 0 10 chr12 134949180 134949491 -9332998 - AluSc SINE Alu -1 308 1 2318 104 3 0 chr12 134950092 134950399 -9332090 - AluSx SINE Alu -4 308 1 186 210 97 32 chr12 134950685 134950747 -9331742 + L2 LINE L2 3182 3247 -25 3983 127 27 21 chr12 134950773 134951404 -9331085 - MER41B LTR ERV1 0 635 1 829 185 22 11 chr12 134951421 134951599 -9330890 - LTR32 LTR ERVL -43 428 249 311 264 73 79 chr12 134951604 134951769 -9330720 + L1ME4a LINE L1 5319 5501 -620 283 246 36 0 chr12 134951806 134951916 -9330573 + (TA)n Simple_repeat Simple_repeat 2 115 0 300 224 105 0 chr12 134951981 134952057 -9330432 - MIR SINE MIR -10 252 169 2050 213 49 70 chr12 134952058 134952460 -9330029 - LTR9 LTR ERV1 -11 601 215 1473 162 109 67 chr12 134952460 134952892 -9329597 + LTR7 LTR ERV1 1 450 0 2050 213 49 70 chr12 134952892 134953103 -9329386 - LTR9 LTR ERV1 -397 215 1 253 232 0 0 chr12 134953108 134953164 -9329325 - MIR SINE MIR -106 156 101 1943 193 81 21 chr12 134953164 134953594 -9328895 - LTR32 LTR ERVL -1 470 15 309 230 122 0 chr12 134953594 134953668 -9328821 - MIR SINE MIR -159 103 21 296 275 92 18 chr12 134953677 134953786 -9328703 + L1ME4a LINE L1 5597 5713 -408 1637 173 32 18 chr12 134953837 134954121 -9328368 + AluJo SINE Alu 1 288 -24 2225 109 0 3 chr12 134954264 134954557 -9327932 - AluSg SINE Alu -18 292 1 465 280 88 25 chr12 134954563 134954802 -9327687 + L1ME4a LINE L1 5863 6116 -5 1826 169 48 48 chr12 134955663 134956120 -9326369 - MER31B LTR ERV1 -9 457 1 301 189 79 102 chr12 134956238 134956365 -9326124 - MLT1H LTR MaLR 0 549 426 1916 152 0 52 chr12 134956797 134956997 -9325492 - AluJb SINE Alu 0 312 134 2280 113 0 3 chr12 134956997 134957297 -9325192 + AluSq SINE Alu 1 299 -14 1916 152 0 52 chr12 134957297 134957425 -9325064 - AluJb SINE Alu -178 134 1 2095 134 0 3 chr12 134957784 134958089 -9324400 - AluSg SINE Alu -6 304 1 766 279 69 36 chr12 134958214 134958604 -9323885 - LTR16C LTR ERVL -6 485 83 1813 161 7 7 chr12 134958782 134959073 -9323416 - AluSx SINE Alu -17 295 5 519 291 1 1 chr12 134959084 134959248 -9323241 - MER58B DNA MER1_type -14 327 164 237 340 6 38 chr12 134959370 134959529 -9322960 + G-rich Low_complexity Low_complexity 4 157 0 * 264 281 3 55 chr12 134959497 134959725 -9322764 + GA-rich Low_complexity Low_complexity 1 216 0 306 319 0 0 chr12 134959754 134959895 -9322594 + A-rich Low_complexity Low_complexity 1 141 0 22 186 0 0 chr12 134959939 134959998 -9322491 + GC_rich Low_complexity Low_complexity 1 59 0 5991 66 19 62 chr12 134960015 134960920 -9321569 - SVA Other Other -520 866 1 323 96 0 19 chr12 134960920 134960972 -9321517 - LTR17 LTR ERV1 -595 185 135 1034 256 59 20 chr12 134961015 134961371 -9321118 - L1ME2 LINE L1 -14 6150 5781 1963 144 0 0 chr12 134961499 134961790 -9320699 - AluSx SINE Alu -21 291 1 482 270 78 74 chr12 134961919 134962263 -9320226 - L1ME2 LINE L1 -469 5652 5290 2165 92 62 0 chr12 134962264 134962556 -9319933 - AluSg SINE Alu 0 310 1 282 233 82 46 chr12 134962811 134962988 -9319501 - L1P LINE L1 -1111 5035 4850 2036 89 7 34 chr12 134963030 134963322 -9319167 - AluSx SINE Alu -14 298 15 251 175 0 0 chr12 134963322 134963362 -9319127 - AluSx SINE Alu -268 40 1 5009 81 102 10 chr12 134963617 134964331 -9318158 - LTR17 LTR ERV1 0 780 1 2077 146 91 12 chr12 134965007 134965424 -9317065 - LTR7 LTR ERV1 0 450 1 1929 147 75 0 chr12 134965632 134965952 -9316537 - MER2 DNA MER2_type 0 344 1 246 128 0 0 chr12 134966000 134966039 -9316450 + (GA)n Simple_repeat Simple_repeat 2 40 0 3598 182 17 75 chr12 134966041 134966959 -9315530 + MER63C DNA MER1_type 41 905 -25 496 330 88 5 chr12 134967092 134967286 -9315203 - MIR SINE MIR -6 256 47 2491 55 17 0 chr12 134967327 134967620 -9314869 - AluY SINE Alu -13 298 1 206 380 13 0 chr12 134967635 134967714 -9314775 + L3 LINE CR1 1039 1118 -459 412 301 62 62 chr12 134967782 134968041 -9314448 + MLT1J LTR MaLR 102 360 -151 405 278 241 12 chr12 134968439 134968680 -9313809 + L3 LINE CR1 1281 1576 -1 2063 99 6 58 chr12 134969409 134969721 -9312768 - AluSx SINE Alu -16 296 1 360 344 137 36 chr12 134969832 134970172 -9312317 + L2 LINE L2 2733 3149 -164 891 193 48 70 chr12 134970172 134970235 -9312254 + MER58A DNA MER1_type 2 65 -2355 2407 99 0 0 chr12 134970235 134970539 -9311950 - AluSc SINE Alu -4 305 2 891 193 48 70 chr12 134970539 134970703 -9311786 + MER58A DNA MER1_type 65 224 0 360 344 137 36 chr12 134970703 134970886 -9311603 + L2 LINE L2 3149 3312 -1 2377 112 0 6 chr12 134970920 134971234 -9311255 + AluSx SINE Alu 1 312 0 1987 253 17 21 chr12 134971301 134971776 -9310713 + MLT1H1 LTR MaLR 12 480 -69 2288 81 3 0 chr12 134971776 134972079 -9310410 - AluY SINE Alu 0 304 1 1987 253 17 21 chr12 134972079 134972144 -9310345 + MLT1H1 LTR MaLR 480 544 -5 2384 93 0 0 chr12 134974480 134974780 -9307709 - AluSq SINE Alu -13 300 1 241 280 8 34 chr12 134974839 134974957 -9307532 + MER115 DNA AcHobo 1 115 -578 438 234 71 39 chr12 134974987 134975141 -9307348 + MER96 DNA MER1_type? 16 174 -1 229 180 40 20 chr12 134975141 134975189 -9307300 + MER115 DNA AcHobo 161 209 -484 235 281 45 11 chr12 134975220 134975309 -9307180 + MER115 DNA AcHobo 316 407 -286 2042 129 17 0 chr12 134975400 134975687 -9306802 - AluSx SINE Alu -20 292 1 462 18 0 0 chr12 134976228 134976283 -9306206 + (TG)n Simple_repeat Simple_repeat 2 56 0 25 31 0 0 chr12 134976357 134976389 -9306100 + AT_rich Low_complexity Low_complexity 1 32 0 2421 103 0 0 chr12 134976451 134976761 -9305728 - AluSx SINE Alu -2 310 1 571 240 47 58 chr12 134976832 134977003 -9305486 - L1MA10 LINE L1 0 6312 6148 378 61 0 0 chr12 134977011 134977060 -9305429 + (TG)n Simple_repeat Simple_repeat 1 49 0 302 182 45 0 chr12 134977065 134977131 -9305358 - L1MA9 LINE L1 -53 6259 6191 205 240 202 19 chr12 134977131 134977235 -9305254 - MIR3 SINE MIR -22 186 64 375 254 161 51 chr12 134977370 134977606 -9304883 - MLT1K LTR MaLR -3 585 324 2351 93 0 7 chr12 134977663 134977973 -9304516 + AluSx SINE Alu 1 308 -4 229 234 0 0 chr12 134978537 134978584 -9303905 + A-rich Low_complexity Low_complexity 1 47 0 2165 114 0 0 chr12 134979064 134979344 -9303145 - AluSx SINE Alu -32 280 1 473 229 28 9 chr12 134979656 134979765 -9302724 + LTR16C LTR ERVL 155 265 -226 1755 249 100 9 chr12 134979765 134979781 -9302708 - L1MD3 LINE L1 0 7995 7982 2240 108 0 3 chr12 134979781 134980116 -9302373 - AluSx SINE Alu 0 334 1 1755 249 100 9 chr12 134980116 134980826 -9301663 - L1MD3 LINE L1 -13 7982 7128 28 86 0 0 chr12 134980831 134980901 -9301588 + AT_rich Low_complexity Low_complexity 1 70 0 522 292 54 25 chr12 134980925 134981165 -9301324 + LTR16C LTR ERVL 245 491 0 865 243 57 53 chr12 134982111 134982412 -9300077 - MER46C DNA MER2_type 0 338 37 2331 97 13 3 chr12 134982430 134982740 -9299749 - AluSq SINE Alu 0 313 1 1710 201 72 68 chr12 134983568 134983926 -9298563 - MLT1D LTR MaLR 0 505 143 1954 161 0 0 chr12 134983926 134984224 -9298265 - AluJb SINE Alu -14 298 1 1710 201 72 68 chr12 134984224 134984368 -9298121 - MLT1D LTR MaLR -362 143 1 500 192 44 110 chr12 134984530 134984599 -9297890 - MIR SINE MIR -89 173 101 649 211 93 26 chr12 134984599 134984793 -9297696 - MER3 DNA MER1_type -2 207 1 500 192 44 110 chr12 134984793 134984905 -9297584 - MIR SINE MIR -161 101 4 297 283 367 0 chr12 134985425 134985602 -9296887 - MIR SINE MIR -3 259 18 2180 113 0 17 chr12 134985872 134986174 -9296315 + AluJb SINE Alu 1 297 -15 414 100 0 17 chr12 134986194 134986254 -9296235 + Alu SINE Alu 238 296 -16 2315 90 3 0 chr12 134986815 134987115 -9295374 - AluSp SINE Alu -12 301 1 1763 177 3 17 chr12 134987199 134987498 -9294991 - AluJb SINE Alu -17 295 1 462 184 0 0 chr12 134987628 134987715 -9294774 + MER53 DNA DNA 9 95 -94 283 179 15 0 chr12 134987717 134987784 -9294705 - MER53 DNA DNA -55 134 67 1429 154 86 38 chr12 134987924 134988050 -9294439 - AluJo SINE Alu -6 306 187 2287 103 3 0 chr12 134988050 134988350 -9294139 - AluSx SINE Alu -6 306 6 1429 154 86 38 chr12 134988350 134988515 -9293974 - AluJo SINE Alu -125 187 1 267 218 10 79 chr12 134989277 134989323 -9293166 + MER112 DNA MER1_type 78 115 -145 3146 161 45 73 chr12 134989323 134990032 -9292457 + LTR8 LTR ERV1 1 689 -2 267 218 10 79 chr12 134990032 134990086 -9292403 + MER112 DNA MER1_type 115 171 -89 2382 104 7 0 chr12 134990135 134990443 -9292046 + AluSx SINE Alu 1 310 -2 261 248 227 14 chr12 134990531 134990672 -9291817 - MER5A DNA MER1_type -2 187 17 276 333 12 0 chr12 134991110 134991194 -9291295 - L2 LINE L2 0 3272 3188 2663 52 0 0 chr12 134991233 134991539 -9290950 + AluY SINE Alu 1 306 -5 2221 131 0 3 chr12 134991663 134991975 -9290514 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr12 134992131 134992154 -9290335 + AT_rich Low_complexity Low_complexity 1 23 0 1490 201 11 4 chr12 134992157 134992436 -9290053 - AluJo SINE Alu -31 281 1 342 284 20 94 chr12 134992439 134992833 -9289656 - L1ME4a LINE L1 -142 5979 5615 576 215 32 81 chr12 134992833 134992913 -9289576 + MER5B DNA MER1_type 1 83 -95 2360 95 7 3 chr12 134992913 134993218 -9289271 - AluSx SINE Alu -6 306 1 576 215 32 81 chr12 134993218 134993323 -9289166 + MER5B DNA MER1_type 83 177 -1 381 333 40 9 chr12 134993361 134993583 -9288906 - L1ME4a LINE L1 -2265 5543 5315 5929 50 14 9 chr12 134993761 134994529 -9287960 + SVA Other Other 625 1395 0 3574 119 5 4 chr12 134994592 134995158 -9287331 + LTR17 LTR ERV1 170 780 0 736 87 0 43 chr12 134995158 134995273 -9287216 + FRAM SINE Alu 67 176 0 2558 34 3 3 chr12 134995273 134995569 -9286920 + AluY SINE Alu 1 296 -15 1822 168 10 13 chr12 134998199 134998503 -9283986 + AluJo SINE Alu 1 303 -9 325 303 74 29 chr12 134999590 134999661 -9282828 - MIR SINE MIR -44 218 152 1614 158 117 42 chr12 134999661 134999847 -9282642 - MLT1B LTR MaLR -3 387 216 2333 100 0 0 chr12 134999847 135000148 -9282341 - AluSg SINE Alu -9 301 1 1614 158 117 42 chr12 135000148 135000321 -9282168 - MLT1B LTR MaLR -174 216 1 325 303 74 29 chr12 135000321 135000424 -9282065 - MIR SINE MIR -110 152 36 326 232 46 86 chr12 135001255 135001350 -9281139 - MIR3 SINE MIR -62 146 58 1348 203 21 31 chr12 135001350 135001675 -9280814 - MER33 DNA MER1_type -1 323 2 326 232 46 86 chr12 135001675 135001730 -9280759 - MIR3 SINE MIR -150 58 2 1039 100 17 17 chr12 135001970 135002002 -9280487 + (CACCAT)n Simple_repeat Simple_repeat 1 212 0 1039 100 17 17 chr12 135002002 135002182 -9280307 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 1001 102 25 20 chr12 135002204 135003035 -9279454 + (CACCAT)n Simple_repeat Simple_repeat 1 835 0 * 1107 134 9 3 chr12 135002833 135003175 -9279314 + (CAT)n Simple_repeat Simple_repeat 1 344 0 216 86 0 0 chr12 135003208 135003243 -9279246 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2192 111 0 0 chr12 135003245 135003524 -9278965 - AluY SINE Alu -31 280 2 337 253 12 0 chr12 135003527 135003610 -9278879 - MIR SINE MIR -35 227 144 1585 185 61 24 chr12 135003614 135003992 -9278497 - MLT1D LTR MaLR 0 505 114 474 128 64 133 chr12 135004008 135004196 -9278293 - Charlie5 DNA MER1_type -30 2582 2408 388 217 0 0 chr12 135004212 135004295 -9278194 - MLT1D LTR MaLR -422 83 1 204 268 89 0 chr12 135004296 135004352 -9278137 - MIR SINE MIR -118 144 84 380 261 14 36 chr12 135006235 135006373 -9276116 + L1MD2 LINE L1 6196 6330 -29 2280 125 0 0 chr12 135006377 135006681 -9275808 + AluSq SINE Alu 1 304 -9 183 42 0 0 chr12 135006712 135006736 -9275753 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 257 302 16 24 chr12 135006756 135006882 -9275607 + GA-rich Low_complexity Low_complexity 2 126 0 592 214 53 0 chr12 135008158 135008289 -9274200 + MER58B DNA MER1_type 167 304 -37 1830 160 24 7 chr12 135008506 135008800 -9273689 + AluJo SINE Alu 1 299 -13 1516 231 85 30 chr12 135008803 135009309 -9273180 - MLT1E3 LTR MaLR -89 535 2 273 293 31 93 chr12 135009311 135009570 -9272919 + HAL1 LINE L1 2257 2499 -8 508 226 95 12 chr12 135009816 135009984 -9272505 - LTR16C LTR ERVL -7 484 303 877 217 81 38 chr12 135010250 135010628 -9271861 - MLT1C LTR MaLR -1 389 3 817 223 80 13 chr12 135010628 135010852 -9271637 - MIR SINE MIR -22 240 2 194 284 45 30 chr12 135010947 135011014 -9271475 - L2 LINE L2 0 3272 3205 2230 112 7 0 chr12 135011028 135011324 -9271165 + AluSx SINE Alu 1 298 -14 2380 53 0 41 chr12 135011326 135011646 -9270843 + AluY SINE Alu 1 307 -4 827 167 94 17 chr12 135011775 135011955 -9270534 - MER58B DNA MER1_type -145 196 3 2201 116 0 22 chr12 135012181 135012492 -9269997 + AluSq SINE Alu 1 304 -9 909 264 0 0 chr12 135012747 135012955 -9269534 + MER58A DNA MER1_type 3 210 -14 2424 98 3 0 chr12 135012966 135013271 -9269218 + AluSx SINE Alu 5 310 -2 1612 115 161 27 chr12 135014445 135014705 -9267784 - AluJb SINE Alu -17 295 1 209 276 86 35 chr12 135016589 135016705 -9265784 - MER5A DNA MER1_type -27 151 30 264 167 0 0 chr12 135016730 135016778 -9265711 + (CAT)n Simple_repeat Simple_repeat 3 50 0 315 182 53 0 chr12 135017381 135017551 -9264938 + GA-rich Low_complexity Low_complexity 2 180 0 263 298 135 0 chr12 135017961 135018065 -9264424 + MIR3 SINE MIR 85 202 -6 379 304 36 50 chr12 135018866 135019086 -9263403 + L1MC4a LINE L1 4908 5124 -1022 2324 106 0 10 chr12 135019088 135019390 -9263099 + AluSx SINE Alu 1 299 -13 2261 81 0 47 chr12 135019398 135019718 -9262771 + AluY SINE Alu 1 305 -6 1407 283 40 62 chr12 135019856 135020552 -9261937 + L1MC4a LINE L1 5260 5940 -1868 671 259 63 5 chr12 135020781 135020970 -9261519 - MIR SINE MIR 0 262 63 329 252 8 79 chr12 135022259 135022386 -9260103 + MIR SINE MIR 46 163 -99 1236 208 99 26 chr12 135023340 135023671 -9258818 + MLT1C LTR MaLR 59 385 -82 2417 89 0 0 chr12 135023671 135023964 -9258525 + AluSx SINE Alu 1 293 -19 1236 208 99 26 chr12 135023964 135024054 -9258435 + MLT1C LTR MaLR 385 467 0 1192 253 72 21 chr12 135024622 135024998 -9257491 + MLT1K LTR MaLR 173 567 -21 180 333 36 12 chr12 135024999 135025083 -9257406 - L2 LINE L2 -665 2649 2564 190 347 57 32 chr12 135025179 135025303 -9257186 + L2 LINE L2 3146 3272 0 272 245 20 41 chr12 135025724 135025822 -9256667 - LTR67 LTR ERVL -2 555 460 965 145 30 18 chr12 135027257 135027423 -9255066 + AluJb SINE Alu 137 304 -8 1861 146 10 10 chr12 135027885 135028187 -9254302 - AluJb SINE Alu -10 302 1 604 175 42 8 chr12 135028202 135028322 -9254167 + L1M3 LINE L1 5570 5693 -487 272 120 20 0 chr12 135028835 135028885 -9253604 + T-rich Low_complexity Low_complexity 3 53 0 1102 142 0 34 chr12 135028888 135029064 -9253425 - AluSg/x SINE Alu -3 309 140 979 188 58 5 chr12 135029656 135029864 -9252625 + L1MD3 LINE L1 7462 7680 -315 913 118 0 0 chr12 135029866 135029985 -9252504 + AluSq/x SINE Alu 1 119 -194 329 146 0 0 chr12 135029985 135030040 -9252449 + AluSp/q SINE Alu 242 296 -7 827 225 94 47 chr12 135030048 135030202 -9252287 + L1MD3 LINE L1 7682 7856 -139 2358 82 3 0 chr12 135030202 135030493 -9251996 + AluSp SINE Alu 1 292 -21 827 225 94 47 chr12 135030493 135030614 -9251875 + L1MD3 LINE L1 7856 7970 -25 343 303 90 27 chr12 135030617 135030805 -9251684 + L1ME4a LINE L1 5860 6059 -62 299 323 33 38 chr12 135031405 135031771 -9250718 + L1MC/D LINE L1 4245 4611 -1535 2302 80 0 11 chr12 135031771 135032089 -9250400 - AluSq SINE Alu 0 315 1 299 323 33 38 chr12 135032089 135032145 -9250344 + L1MC/D LINE L1 4611 4666 -1480 259 226 32 0 chr12 135032168 135032230 -9250259 + L1MC/D LINE L1 4720 4783 -1363 285 330 69 27 chr12 135032537 135032725 -9249764 + MLT1K LTR MaLR 382 577 -11 378 350 55 33 chr12 135032881 135033064 -9249425 + L1MC/D LINE L1 4880 5066 -1080 2079 120 0 41 chr12 135033200 135033341 -9249148 + AluJb SINE Alu 1 146 -166 2447 73 0 3 chr12 135033341 135033643 -9248846 + AluY SINE Alu 1 301 -10 351 0 0 0 chr12 135033643 135033682 -9248807 + (TA)n Simple_repeat Simple_repeat 1 39 0 2079 120 0 41 chr12 135033682 135033856 -9248633 + AluJb SINE Alu 144 304 -8 388 329 41 9 chr12 135033969 135034188 -9248301 + L1MC/D LINE L1 5318 5543 -2265 415 223 19 29 chr12 135034226 135034329 -9248160 - MER5B DNA MER1_type -1 177 76 2351 98 7 3 chr12 135034331 135034638 -9247851 + AluSx SINE Alu 1 308 -4 1013 130 88 93 chr12 135034711 135034927 -9247562 - AluJo SINE Alu -13 299 85 944 161 0 0 chr12 135034943 135035086 -9247403 - AluJb SINE Alu -169 143 1 2297 110 3 0 chr12 135035395 135035694 -9246795 + AluSc SINE Alu 8 307 -2 188 250 238 12 chr12 135036354 135036438 -9246051 - L2 LINE L2 -19 3294 3192 674 132 0 0 chr12 135036506 135036597 -9245892 + FLAM_C SINE Alu 34 124 -19 239 230 15 118 chr12 135036631 135036766 -9245723 - L2 LINE L2 -253 3019 2899 539 213 25 125 chr12 135036921 135037274 -9245215 - HAL1b LINE L1 0 1348 1031 437 235 22 22 chr12 135037301 135037437 -9245052 - HAL1b LINE L1 -767 581 446 1156 141 0 0 chr12 135037446 135037609 -9244880 - FRAM SINE Alu -14 162 1 748 240 183 29 chr12 135037757 135038157 -9244332 - L2 LINE L2 -112 3201 2745 210 274 48 0 chr12 135038159 135038221 -9244268 + L2 LINE L2 2648 2712 -602 3779 109 19 10 chr12 135038221 135038743 -9243746 - MER1A DNA MER1_type 0 527 1 739 246 82 62 chr12 135038760 135039211 -9243278 - HAL1b LINE L1 -814 534 75 468 150 0 25 chr12 135039238 135039318 -9243171 - MER116 DNA Mariner -1 79 2 584 239 180 14 chr12 135039391 135039613 -9242876 - MLT1L LTR MaLR -339 276 18 232 307 50 14 chr12 135040580 135040720 -9241769 - LTR16B LTR ERVL -1 463 319 339 44 0 0 chr12 135040973 135041018 -9241471 + (TG)n Simple_repeat Simple_repeat 2 46 0 2566 84 0 0 chr12 135041212 135041523 -9240966 - AluSx SINE Alu -1 311 1 2296 117 0 0 chr12 135042571 135042878 -9239611 - AluSx SINE Alu -5 307 1 1235 246 68 18 chr12 135043868 135044263 -9238226 + MLT1C LTR MaLR 53 467 0 2252 110 0 19 chr12 135044531 135044848 -9237641 + AluSx SINE Alu 1 311 -1 384 222 22 11 chr12 135044868 135044958 -9237531 + LTR67 LTR ERVL 467 557 0 2318 114 0 0 chr12 135045873 135046170 -9236319 + AluSx SINE Alu 1 297 -15 198 242 32 32 chr12 135047030 135047092 -9235397 - MIR SINE MIR -90 172 111 36 23 0 0 chr12 135047180 135047223 -9235266 + AT_rich Low_complexity Low_complexity 1 43 0 384 213 50 0 chr12 135047763 135047843 -9234646 + MER31B LTR ERV1 1 84 -382 * 642 183 52 0 chr12 135047839 135047992 -9234497 + MER31B LTR ERV1 269 429 -37 2602 27 14 0 chr12 135047995 135048289 -9234200 - AluY SINE Alu -13 298 1 350 326 62 16 chr12 135049001 135049130 -9233359 + L2 LINE L2 3137 3271 -1 1281 227 85 30 chr12 135049654 135050113 -9232376 + L1ME2 LINE L1 5671 6154 -10 241 200 18 0 chr12 135050156 135050211 -9232278 + L1MC4 LINE L1 7832 7887 -155 436 249 74 26 chr12 135050457 135050646 -9231843 + L1MC5 LINE L1 7609 7806 -155 350 280 19 9 chr12 135051389 135051496 -9230993 + MIR SINE MIR 46 153 -109 1011 198 5 21 chr12 135051714 135051901 -9230588 + MER5A DNA MER1_type 6 189 0 257 355 132 16 chr12 135051901 135052022 -9230467 + L2 LINE L2 2938 3072 -200 1800 158 0 3 chr12 135052983 135053274 -9229215 + AluJo SINE Alu 1 290 -22 2279 58 17 0 chr12 135053956 135054249 -9228240 + AluY SINE Alu 1 298 -13 3125 84 20 5 chr12 135054250 135054688 -9227801 + L1PA10 LINE L1 5715 6159 -9 1018 259 142 68 chr12 135055674 135056234 -9226255 + MER115 DNA AcHobo 9 623 -70 1884 127 11 0 chr12 135056234 135056510 -9225979 - AluJo SINE Alu -30 282 4 1018 259 142 68 chr12 135056510 135056585 -9225904 + MER115 DNA AcHobo 623 691 -2 22 56 0 0 chr12 135056683 135056719 -9225770 + AT_rich Low_complexity Low_complexity 1 36 0 1782 152 14 7 chr12 135056768 135057064 -9225425 + AluSx SINE Alu 1 298 -14 796 235 32 32 chr12 135057755 135057972 -9224517 - MIR SINE MIR 0 262 46 384 144 34 41 chr12 135058293 135058439 -9224050 + (CAGAGA)n Simple_repeat Simple_repeat 3 147 0 361 289 127 18 chr12 135058482 135058710 -9223779 - L2 LINE L2 -666 2648 2396 1991 190 19 0 chr12 135058713 135059077 -9223412 + MLT2D LTR ERVL 1 371 -43 227 300 131 52 chr12 135059125 135059329 -9223160 + L2 LINE L2 2253 2440 -874 1672 212 140 5 chr12 135059329 135059772 -9222717 + MLT1D LTR MaLR 1 503 -2 227 300 131 52 chr12 135059772 135059950 -9222539 + L2 LINE L2 2440 2665 -649 336 173 80 0 chr12 135060308 135060383 -9222106 + L1MA9 LINE L1 6207 6287 -25 359 200 31 3 chr12 135061254 135061383 -9221106 + MER53 DNA DNA 1 189 0 1565 161 3 45 chr12 135061813 135062105 -9220384 + AluJo SINE Alu 1 280 -32 2144 96 0 17 chr12 135062594 135062895 -9219594 + AluSq SINE Alu 1 296 -17 1926 92 99 0 chr12 135063131 135063414 -9219075 + AluY SINE Alu 1 311 0 321 265 92 97 chr12 135063490 135063675 -9218814 + L1M4 LINE L1 4875 5058 -1088 2304 85 0 0 chr12 135064168 135064475 -9218014 + AluY SINE Alu 1 307 -4 1260 233 66 3 chr12 135065125 135065443 -9217046 - MER58B DNA MER1_type 0 341 4 418 326 99 48 chr12 135065494 135065887 -9216602 + L1M4 LINE L1 3074 3486 -2660 260 339 23 15 chr12 135066560 135066690 -9215799 - L1MEc LINE L1 -3313 2902 2772 350 304 84 39 chr12 135066933 135067192 -9215297 - L1MEc LINE L1 -3799 2416 2179 198 0 0 0 chr12 135067447 135067469 -9215020 + (A)n Simple_repeat Simple_repeat 1 22 0 319 281 97 18 chr12 135069215 135069329 -9213160 - MIR SINE MIR -40 222 100 193 284 213 16 chr12 135069591 135069774 -9212715 - L3 LINE CR1 -9 1568 1350 * 225 277 69 40 chr12 135069743 135069844 -9212645 + L2 LINE L2 2393 2496 -818 232 271 213 16 chr12 135070172 135070360 -9212129 + MER102b DNA MER1_type 87 311 -30 467 265 23 23 chr12 135070374 135070506 -9211983 - MER94 DNA DNA -1 133 2 470 316 52 0 chr12 135070766 135070921 -9211568 - MIR3 SINE MIR -6 202 40 332 257 171 21 chr12 135071030 135071170 -9211319 - MIR3 SINE MIR -1 207 47 1140 191 173 30 chr12 135071666 135072070 -9210419 + L2 LINE L2 2851 3312 -1 424 263 255 29 chr12 135075032 135075408 -9207081 + L2 LINE L2 2844 3304 -9 932 265 103 21 chr12 135075854 135076211 -9206278 + L1MC4a LINE L1 5578 5975 -1833 1672 176 16 0 chr12 135076211 135076335 -9206154 + AluJo SINE Alu 1 121 -191 207 0 0 0 chr12 135076335 135076358 -9206131 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1672 176 16 0 chr12 135076358 135076540 -9205949 + AluJo SINE Alu 121 312 0 932 265 103 21 chr12 135076540 135076601 -9205888 + L1MC4a LINE L1 5975 6030 -1778 488 258 112 116 chr12 135076847 135078259 -9204230 + L1MC5 LINE L1 6432 7977 -65 183 256 49 49 chr12 135080398 135080480 -9202009 + MIR SINE MIR 70 151 -111 378 0 0 0 chr12 135080501 135080543 -9201946 + (CA)n Simple_repeat Simple_repeat 1 42 0 3792 105 4 17 chr12 135080914 135081448 -9201041 - MER1A DNA MER1_type 0 527 1 970 294 260 34 chr12 135081746 135082331 -9200158 + L2 LINE L2 709 1160 -2153 2265 94 0 0 chr12 135082331 135082628 -9199861 + AluSg SINE Alu 1 297 -13 970 294 260 34 chr12 135082628 135084104 -9198385 + L2 LINE L2 1160 3221 -92 212 262 167 88 chr12 135084164 135084572 -9197917 - L2 LINE L2 -2 3311 2872 735 341 125 33 chr12 135084674 135085217 -9197272 - L2 LINE L2 -588 2726 2134 774 200 110 55 chr12 135085225 135085515 -9196974 + L1ME3A LINE L1 5860 6165 -5 437 224 40 20 chr12 135085715 135085867 -9196622 - L2 LINE L2 -1914 1400 1246 270 277 102 29 chr12 135086213 135086350 -9196139 + L2 LINE L2 1400 1546 -1768 336 345 89 48 chr12 135087212 135087528 -9194961 - L2 LINE L2 -17 3255 2927 2241 166 57 18 chr12 135088263 135088703 -9193786 + MLT1C LTR MaLR 6 462 -5 357 280 143 15 chr12 135089708 135089855 -9192634 + MIR SINE MIR 41 203 -59 271 257 0 14 chr12 135090347 135090417 -9192072 + LTR67 LTR ERVL 487 555 -2 456 254 19 16 chr12 135090542 135090688 -9191801 + MER5A DNA MER1_type 4 135 -43 186 205 26 0 chr12 135090909 135090948 -9191541 + MIR SINE MIR 106 145 -63 2679 156 77 28 chr12 135091178 135091787 -9190702 + Charlie1 DNA MER1_type 2119 2757 -4 256 272 205 20 chr12 135094280 135094475 -9188014 + MIR SINE MIR 26 256 -6 289 296 68 23 chr12 135094909 135095041 -9187448 + MIR SINE MIR 6 143 -119 1357 106 20 25 chr12 135095715 135095960 -9186529 - L1MB2 LINE L1 -2 6169 5926 624 284 105 13 chr12 135098369 135098608 -9183881 + MIR SINE MIR 2 262 0 246 312 26 0 chr12 135099955 135100032 -9182457 - ORSL DNA AcHobo -2 273 195 1971 151 28 0 chr12 135102857 135103148 -9179341 - AluJb SINE Alu -11 301 3 222 264 174 13 chr12 135103173 135103328 -9179161 + L2 LINE L2 1899 2078 -1236 284 318 200 20 chr12 135104279 135104363 -9178126 + L2 LINE L2 2309 2377 -937 2100 125 138 29 chr12 135104363 135104748 -9177741 - MSTC LTR MaLR 0 428 2 284 318 200 20 chr12 135104748 135105063 -9177426 + L2 LINE L2 2377 2780 -534 649 284 184 43 chr12 135105159 135105627 -9176862 - L1ME4a LINE L1 -11 6110 5577 790 292 173 64 chr12 135105738 135106043 -9176446 - L1ME4a LINE L1 -12 6109 5839 1845 155 12 46 chr12 135106043 135106366 -9176123 + AluJb SINE Alu 1 312 0 790 292 173 64 chr12 135106366 135106799 -9175690 - L1ME4a LINE L1 -282 5839 5290 604 281 88 52 chr12 135106853 135107606 -9174883 - L1ME4a LINE L1 -978 5168 4389 248 298 40 20 chr12 135107648 135107799 -9174690 - L1ME4a LINE L1 -2400 5408 5255 239 274 29 10 chr12 135108201 135108303 -9174186 - L1ME4a LINE L1 -1313 4833 4730 2236 83 28 0 chr12 135108934 135109222 -9173267 - AluY SINE Alu -15 296 1 665 282 72 45 chr12 135109338 135109753 -9172736 + L2 LINE L2 2627 3051 -221 1454 179 51 18 chr12 135110310 135110583 -9171906 + AluJo SINE Alu 1 282 -30 297 325 0 0 chr12 135110912 135110995 -9171494 - MIR SINE MIR -123 139 57 26 30 0 0 chr12 135111469 135111502 -9170987 + AT_rich Low_complexity Low_complexity 1 33 0 210 216 34 45 chr12 135112345 135112433 -9170056 + (CCCCG)n Simple_repeat Simple_repeat 5 91 0 214 94 0 57 chr12 135112873 135112926 -9169563 + (CCCCCG)n Simple_repeat Simple_repeat 4 53 0 24 91 0 0 chr12 135113200 135113266 -9169223 + GC_rich Low_complexity Low_complexity 1 66 0 34 93 0 0 chr12 135113344 135113441 -9169048 + GC_rich Low_complexity Low_complexity 1 97 0 25 65 0 0 chr12 135113544 135113590 -9168899 + GC_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr12 135113776 135113799 -9168690 + GC_rich Low_complexity Low_complexity 1 23 0 349 260 163 51 chr12 135115491 135115687 -9166802 + L3 LINE CR1 1202 1419 -158 2173 64 82 0 chr12 135116281 135116563 -9165926 + AluSc SINE Alu 1 305 -4 333 313 30 53 chr12 135121458 135121589 -9160900 + L2 LINE L2 3185 3312 -1 877 219 33 0 chr12 135122824 135123034 -9159455 - MER20 DNA MER1_type -2 217 1 615 259 190 5 chr12 135124080 135124296 -9158193 + MIR SINE MIR 1 256 -6 216 369 90 33 chr12 135124705 135124827 -9157662 - L2 LINE L2 -6 3266 3138 478 274 102 6 chr12 135125849 135126006 -9156483 - L2 LINE L2 -47 3266 3095 277 196 0 0 chr12 135126162 135126175 -9156314 + MER3 DNA MER1_type 35 47 -162 455 197 107 0 chr12 135126175 135126297 -9156192 - MER3 DNA MER1_type 0 209 75 194 257 149 0 chr12 135126323 135126397 -9156092 + MIR SINE MIR 107 191 -71 2096 117 35 0 chr12 135126420 135126702 -9155787 + AluSx SINE Alu 1 292 -20 402 158 40 0 chr12 135126719 135126795 -9155694 - MER3 DNA MER1_type -126 83 5 530 262 63 37 chr12 135126805 135126996 -9155493 - MIR SINE MIR -65 197 2 2280 89 3 0 chr12 135127672 135127974 -9154515 + AluSp SINE Alu 1 303 0 2154 113 33 10 chr12 135128026 135128328 -9154161 + AluSx SINE Alu 1 309 -3 611 164 0 69 chr12 135130260 135130376 -9152113 + FLAM_A SINE Alu 18 125 -17 195 100 0 0 chr12 135132040 135132070 -9150419 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 1047 88 0 14 chr12 135132075 135132222 -9150267 - AluSq SINE Alu -35 278 134 2239 119 0 3 chr12 135132222 135132533 -9149956 - AluY SINE Alu -1 310 1 417 298 131 15 chr12 135132940 135133138 -9149351 - MIR SINE MIR -26 236 16 242 203 34 34 chr12 135133864 135133923 -9148566 - MIR SINE MIR 0 262 204 307 310 20 20 chr12 135134064 135134164 -9148325 + MIR3 SINE MIR 109 208 0 204 286 17 67 chr12 135134888 135135007 -9147482 - L2 LINE L2 -250 3022 2910 1511 106 5 0 chr12 135137922 135138140 -9144349 - pTR5 LTR ERV1 -2043 395 177 373 177 56 65 chr12 135138140 135138247 -9144242 - LTR30 LTR ERV1 -94 620 375 4489 121 44 97 chr12 135138247 135139268 -9143221 - pTR5 LTR ERV1 -413 2025 743 333 262 190 55 chr12 135139389 135140039 -9142450 - L2 LINE L2 -39 3233 2489 453 330 11 0 chr12 135140977 135141168 -9141321 - L1ME LINE L1 -340 5781 5589 364 301 30 15 chr12 135142197 135142330 -9140159 + MIR SINE MIR 12 146 -116 204 133 0 0 chr12 135142365 135142395 -9140094 - L2 LINE L2 -37 3235 3206 234 173 38 135 chr12 135143546 135143679 -9138810 + L1ME4a LINE L1 6002 6121 0 201 271 17 0 chr12 135143748 135143807 -9138682 + L2 LINE L2 3197 3256 -16 1336 223 38 35 chr12 135144105 135144446 -9138043 - LTR10C LTR ERV1 -62 529 188 183 80 0 0 chr12 135145076 135145101 -9137388 + (CCCA)n Simple_repeat Simple_repeat 2 26 0 293 339 31 15 chr12 135145775 135145905 -9136584 + MIR3 SINE MIR 5 136 -72 227 193 158 0 chr12 135146505 135146562 -9135927 + Tigger5 DNA MER2_type 14 79 -2244 346 119 34 0 chr12 135146564 135146623 -9135866 - Tigger5 DNA MER2_type -6 2317 2257 * 462 169 0 0 chr12 135146621 135146698 -9135791 + Tigger5 DNA MER2_type 2242 2318 -5 321 341 158 0 chr12 135152895 135153179 -9129310 + L1MC4a LINE L1 4905 5233 -913 758 280 118 52 chr12 135153196 135153854 -9128635 + L1MC4a LINE L1 5254 5955 -1853 1396 156 19 100 chr12 135154892 135155213 -9127276 - AluJo SINE Alu -17 295 1 204 331 82 14 chr12 135158326 135158465 -9124024 - MIR SINE MIR -95 113 2 1780 111 16 60 chr12 135158771 135159086 -9123403 + AluJo SINE Alu 12 312 0 1789 139 3 40 chr12 135159851 135160175 -9122314 - AluJo SINE Alu 0 312 1 429 306 20 0 chr12 135160185 135160332 -9122157 + Charlie8 DNA MER1_type 71 220 -2197 1191 203 98 3 chr12 135160446 135160742 -9121747 + MER33 DNA MER1_type 1 324 0 323 319 59 44 chr12 135161199 135161334 -9121155 + L2 LINE L2 3133 3269 -3 684 210 0 0 chr12 135161344 135161501 -9120988 + (TGGA)n Simple_repeat Simple_repeat 1 157 0 1267 182 14 5 chr12 135162728 135162948 -9119541 - MER58A DNA MER1_type -1 223 2 2187 160 2 42 chr12 135163159 135163565 -9118924 + MLT1B LTR MaLR 1 390 0 1001 163 101 0 chr12 135163768 135163946 -9118543 + MER58A DNA MER1_type 3 198 -26 788 241 103 5 chr12 135164282 135164485 -9118004 - MER58A DNA MER1_type -1 223 1 1480 112 0 35 chr12 135164835 135164888 -9117601 + AluJo SINE Alu 85 138 -174 2154 114 0 3 chr12 135164888 135165185 -9117304 + AluSx SINE Alu 1 296 -16 1480 112 0 35 chr12 135165185 135165363 -9117126 + AluJo SINE Alu 138 308 -4 899 177 44 35 chr12 135165470 135165673 -9116816 - MER20 DNA MER1_type 0 219 15 954 194 68 5 chr12 135166511 135166717 -9115772 + MER20 DNA MER1_type 1 219 0 2179 219 77 21 chr12 135166796 135166913 -9115576 + MER68 LTR ERV1 1 110 -452 2676 114 49 0 chr12 135166913 135167318 -9115171 + MSTA LTR MaLR 2 426 -2 2179 219 77 21 chr12 135167318 135167730 -9114759 + MER68 LTR ERV1 110 560 -2 249 325 100 19 chr12 135167876 135168036 -9114453 + L2 LINE L2 2125 2297 -1017 2063 174 78 23 chr12 135168044 135168480 -9114009 + MLT1C LTR MaLR 8 467 0 766 293 47 53 chr12 135168556 135168862 -9113627 + L2 LINE L2 2394 2698 -616 1350 195 10 61 chr12 135168862 135169159 -9113330 + AluJo SINE Alu 1 282 -30 766 293 47 53 chr12 135169159 135169302 -9113187 + L2 LINE L2 2698 2840 -474 280 344 11 38 chr12 135169303 135169486 -9113003 + MLT1D LTR MaLR 9 186 -440 791 235 92 0 chr12 135169551 135169747 -9112742 + MLT1D LTR MaLR 283 496 -9 362 261 119 79 chr12 135169761 135170014 -9112475 + L2 LINE L2 3001 3263 -50 288 172 16 16 chr12 135170106 135170170 -9112319 + L1ME2 LINE L1 6091 6154 -10 255 366 9 0 chr12 135170610 135170722 -9111767 + MIR SINE MIR 1 113 -149 534 206 73 146 chr12 135170722 135171141 -9111348 - MLT1D LTR MaLR -2 388 1 315 156 0 31 chr12 135171144 135171208 -9111281 + MIR SINE MIR 117 178 -84 1473 147 94 35 chr12 135171219 135171405 -9111084 - AluJb SINE Alu -9 303 93 2413 70 0 0 chr12 135171405 135171707 -9110782 + AluY SINE Alu 2 303 -8 1473 147 94 35 chr12 135171707 135171806 -9110683 - AluJb SINE Alu -219 93 1 180 200 0 0 chr12 135172927 135172967 -9109522 + (CA)n Simple_repeat Simple_repeat 2 41 0 383 352 124 5 chr12 135173544 135173754 -9108735 + L1ME4a LINE L1 5336 5570 -594 365 295 51 54 chr12 135173847 135174162 -9108327 + L1ME4a LINE L1 5545 5858 -263 363 253 0 0 chr12 135174249 135174328 -9108161 + Tigger5 DNA MER2_type 1 79 -2244 447 122 40 14 chr12 135174330 135174404 -9108085 - Tigger5 DNA MER2_type -6 2317 2242 427 189 27 0 chr12 135174394 135174468 -9108021 + Tigger5 DNA MER2_type 2242 2317 -6 * 245 255 0 0 chr12 135174562 135174613 -9107876 + L1ME4a LINE L1 5998 6048 -73 1692 206 3 40 chr12 135174709 135175087 -9107402 + MLT1A1 LTR MaLR 1 364 -1 1684 78 0 5 chr12 135175177 135175396 -9107093 + AluSg/x SINE Alu 65 282 -30 238 287 64 0 chr12 135175671 135175765 -9106724 - HAL1b LINE L1 -12 1336 1237 365 210 0 0 chr12 135175790 135175852 -9106637 - Tigger5 DNA MER2_type -6 2317 2256 2401 206 57 58 chr12 135176095 135176629 -9105860 + L1MB8 LINE L1 5507 6041 -137 2118 107 10 0 chr12 135176629 135176937 -9105552 - AluSx SINE Alu -1 311 1 2401 206 57 58 chr12 135176937 135177075 -9105414 + L1MB8 LINE L1 6041 6178 0 346 130 19 0 chr12 135177277 135177331 -9105158 + Tigger5 DNA MER2_type 1 55 -2268 * 478 229 38 0 chr12 135177323 135177428 -9105061 + Tigger5 DNA MER2_type 2215 2323 0 7466 47 2 0 chr12 135177867 135178794 -9103695 + L1PA5 LINE L1 5226 6154 0 1707 149 0 18 chr12 135178808 135179112 -9103377 + AluJb SINE Alu 7 305 0 197 179 77 0 chr12 135179366 135179405 -9103084 + MER5B DNA MER1_type 2 43 -135 1756 164 10 16 chr12 135180518 135180829 -9101660 - AluJo SINE Alu -3 309 1 1754 197 18 64 chr12 135181737 135181828 -9100661 + L1MB5 LINE L1 5739 5833 -341 2116 109 0 13 chr12 135181828 135182132 -9100357 + AluSx SINE Alu 1 300 -12 1754 197 18 64 chr12 135182132 135182476 -9100013 + L1MB5 LINE L1 5833 6154 -20 1767 146 14 3 chr12 135182476 135182763 -9099726 - AluJb SINE Alu -22 290 1 1937 143 16 0 chr12 135182785 135183093 -9099396 - AluSq SINE Alu 0 313 1 252 241 17 86 chr12 135183225 135183341 -9099148 + MER102a DNA MER1_type 221 328 -2 432 278 68 31 chr12 135183437 135183599 -9098890 - MIR SINE MIR -2 260 93 663 147 52 27 chr12 135183679 135183892 -9098597 + ORSL DNA AcHobo 1 275 0 380 261 169 52 chr12 135184264 135184513 -9097976 + L2 LINE L2 3036 3313 0 276 224 0 0 chr12 135184517 135184584 -9097905 + (TGGA)n Simple_repeat Simple_repeat 2 68 0 822 171 0 0 chr12 135184802 135184954 -9097535 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 556 239 6 6 chr12 135185006 135185186 -9097303 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 285 304 34 72 chr12 135186139 135186277 -9096212 + MIR SINE MIR 42 177 -64 430 211 18 46 chr12 135186501 135186610 -9095879 - MER5A DNA MER1_type -1 188 83 859 183 0 18 chr12 135186610 135186779 -9095710 - FRAM SINE Alu -9 167 2 407 119 17 0 chr12 135186793 135186852 -9095637 - MER5A DNA MER1_type -124 65 6 1950 222 76 25 chr12 135187312 135187826 -9094663 + MLT1F LTR MaLR 1 540 -2 218 286 83 12 chr12 135189388 135189472 -9093017 - L2 LINE L2 -61 3211 3122 1052 185 21 11 chr12 135192643 135192832 -9089657 + MER58A DNA MER1_type 34 224 0 2566 36 0 0 chr12 135192910 135193212 -9089277 + AluY SINE Alu 10 311 0 186 311 107 49 chr12 135193212 135193334 -9089155 - L3 LINE CR1 -891 686 558 376 149 197 48 chr12 135193696 135193884 -9088605 - L1ME4a LINE L1 -3 6118 5903 569 277 166 38 chr12 135194042 135194655 -9087834 + HAL1 LINE L1 1812 2503 -4 1918 122 0 3 chr12 135195021 135195309 -9087180 + AluSg SINE Alu 23 309 -1 579 274 14 0 chr12 135195310 135195456 -9087033 + Charlie8 DNA MER1_type 73 220 -2197 1256 210 122 46 chr12 135195616 135196049 -9086440 + MLT1C LTR MaLR 1 466 -1 322 265 0 0 chr12 135196058 135196126 -9086363 + Charlie8 DNA MER1_type 1361 1428 -989 1519 150 67 28 chr12 135196387 135196714 -9085775 - L1MC4 LINE L1 0 8042 7703 1690 180 6 3 chr12 135196752 135197063 -9085426 + AluJo SINE Alu 1 312 0 378 107 0 0 chr12 135197063 135197119 -9085370 + (GGA)n Simple_repeat Simple_repeat 2 57 0 1463 244 96 20 chr12 135197125 135197572 -9084917 + L1MC4 LINE L1 7197 7677 -365 362 307 31 8 chr12 135197986 135198113 -9084376 + MIR SINE MIR 86 215 -47 1766 139 20 7 chr12 135199397 135199691 -9082798 - AluJo SINE Alu -14 298 1 3211 169 39 14 chr12 135200344 135200967 -9081522 - L1MB7 LINE L1 -12 6172 5535 1762 178 43 38 chr12 135201363 135201691 -9080798 + L1MB3 LINE L1 5769 6113 -70 2241 95 0 0 chr12 135201691 135201995 -9080494 - AluSc SINE Alu -5 304 1 1762 178 43 38 chr12 135201995 135202066 -9080423 + L1MB3 LINE L1 6113 6182 -1 40 37 0 0 chr12 135202479 135202533 -9079956 + AT_rich Low_complexity Low_complexity 1 54 0 259 153 28 14 chr12 135202541 135202613 -9079876 + (TTAAA)n Simple_repeat Simple_repeat 3 75 0 21 71 0 0 chr12 135202613 135202655 -9079834 + AT_rich Low_complexity Low_complexity 1 42 0 311 217 134 51 chr12 135202655 135202812 -9079677 - L1MC5 LINE L1 -201 7760 7591 1924 113 32 3 chr12 135202812 135203094 -9079395 + AluSq SINE Alu 1 290 -23 189 0 0 0 chr12 135203094 135203115 -9079374 + (TAGA)n Simple_repeat Simple_repeat 2 22 0 195 184 0 0 chr12 135203115 135203153 -9079336 + (CATA)n Simple_repeat Simple_repeat 3 40 0 24 53 0 0 chr12 135203153 135203191 -9079298 + AT_rich Low_complexity Low_complexity 1 38 0 313 193 64 12 chr12 135203191 135203362 -9079127 + (TA)n Simple_repeat Simple_repeat 1 180 0 242 186 43 43 chr12 135203294 135203434 -9079055 + (TATAA)n Simple_repeat Simple_repeat 1 140 0 * 259 178 0 67 chr12 135203463 135203553 -9078936 + A-rich Low_complexity Low_complexity 6 89 0 1847 146 0 40 chr12 135203782 135204105 -9078384 - AluJb SINE Alu -2 310 1 180 0 0 0 chr12 135205354 135205374 -9077115 + (A)n Simple_repeat Simple_repeat 1 20 0 642 208 0 0 chr12 135205489 135205633 -9076856 + (TG)n Simple_repeat Simple_repeat 1 144 0 2186 111 0 3 chr12 135206568 135206865 -9075624 + AluSx SINE Alu 1 296 -16 1315 229 79 59 chr12 135207201 135207372 -9075117 + L1MD2 LINE L1 5856 6022 -337 1637 155 18 4 chr12 135207372 135207650 -9074839 + AluJo SINE Alu 1 282 -30 1315 229 79 59 chr12 135207650 135207972 -9074517 + L1MD2 LINE L1 6022 6359 0 374 324 40 14 chr12 135208842 135208990 -9073499 + MIR SINE MIR 79 230 -32 540 264 35 75 chr12 135210909 135211136 -9071353 + MER102b DNA MER1_type 103 320 -21 1193 245 98 70 chr12 135211585 135212087 -9070402 + MLT2B3 LTR ERVL 1 516 -38 962 83 17 28 chr12 135212087 135212268 -9070221 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 424 143 0 22 chr12 135212268 135212359 -9070130 + (TGGA)n Simple_repeat Simple_repeat 1 89 0 271 173 19 0 chr12 135212386 135212438 -9070051 + MLT2B3 LTR ERVL 468 520 0 * 963 211 88 110 chr12 135212438 135212648 -9069841 - LTR40a LTR ERVL -83 414 238 706 189 8 23 chr12 135212648 135212780 -9069709 + FLAM_A SINE Alu 1 130 -3 963 211 88 110 chr12 135212780 135212980 -9069509 - LTR40a LTR ERVL -259 238 35 1419 164 63 11 chr12 135214142 135214410 -9068079 + AluJo SINE Alu 1 282 -30 189 0 0 0 chr12 135214413 135214434 -9068055 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1785 170 0 3 chr12 135214500 135214794 -9067695 + AluJo SINE Alu 1 293 -19 246 299 30 15 chr12 135214854 135214988 -9067501 - L1MC/D LINE L1 -2321 5487 5352 2164 138 19 24 chr12 135215095 135215472 -9067017 + THE1C LTR MaLR 1 375 0 2098 110 0 10 chr12 135215562 135215888 -9066601 + AluSx SINE Alu 1 312 0 265 309 64 0 chr12 135216465 135216559 -9065930 + L2 LINE L2 3168 3267 -5 289 229 86 0 chr12 135216559 135216629 -9065860 - MER63 DNA MER1_type -8 1054 979 461 147 112 78 chr12 135216642 135216758 -9065731 - MER63 DNA MER1_type -90 746 1 637 220 68 0 chr12 135217213 135217390 -9065099 - MER5A DNA MER1_type 0 189 1 244 69 0 0 chr12 135217421 135217450 -9065039 + U6 snRNA snRNA 1 29 -78 1871 136 14 3 chr12 135217456 135217750 -9064739 + AluJb SINE Alu 3 299 -13 329 352 162 14 chr12 135218440 135218656 -9063833 + MIR SINE MIR 14 261 -1 998 163 6 6 chr12 135218871 135219037 -9063452 + FRAM SINE Alu 1 166 0 1166 173 24 0 chr12 135219222 135219430 -9063059 + MER20 DNA MER1_type 7 219 0 1290 66 0 0 chr12 135219623 135219789 -9062700 + AluY SINE Alu 146 311 0 983 234 9 22 chr12 135219936 135220162 -9062327 - MIR SINE MIR -38 224 2 183 42 0 0 chr12 135220200 135220224 -9062265 + (T)n Simple_repeat Simple_repeat 1 24 0 1711 164 13 7 chr12 135220329 135220627 -9061862 + AluJb SINE Alu 1 300 -12 463 283 26 42 chr12 135221154 135221345 -9061144 + L2 LINE L2 3125 3312 -1 291 184 50 39 chr12 135221359 135221449 -9061040 + L1ME4a LINE L1 5670 5759 -362 1444 150 6 96 chr12 135221551 135221864 -9060625 + AluJo SINE Alu 17 301 -11 461 274 26 47 chr12 135221879 135222069 -9060420 + L1ME4a LINE L1 5924 6109 -12 1835 96 9 105 chr12 135222069 135222289 -9060200 - AluSx SINE Alu -1 311 132 2080 102 3 3 chr12 135222289 135222582 -9059907 + AluY SINE Alu 1 293 -18 1835 96 9 105 chr12 135222582 135222695 -9059794 - AluSx SINE Alu -180 132 10 197 269 11 65 chr12 135222831 135222924 -9059565 + MIR3 SINE MIR 4 91 -117 334 328 69 6 chr12 135222941 135223273 -9059216 + L1ME4a LINE L1 5592 5944 -177 309 322 98 21 chr12 135223275 135223418 -9059071 + L1ME4a LINE L1 5968 6121 0 1596 201 0 0 chr12 135223517 135223806 -9058683 + AluJo SINE Alu 1 289 -23 3082 166 32 2 chr12 135224360 135224920 -9057569 + L1MB5 LINE L1 5590 6166 -8 2010 131 0 0 chr12 135224934 135225224 -9057265 + AluSx SINE Alu 1 290 -22 21 0 0 0 chr12 135226113 135226134 -9056355 + GC_rich Low_complexity Low_complexity 1 21 0 499 284 128 41 chr12 135227081 135227299 -9055190 - MIR SINE MIR -2 260 24 864 155 0 0 chr12 135227404 135227533 -9054956 + FLAM_C SINE Alu 1 129 -4 225 183 33 67 chr12 135227546 135227726 -9054763 + (TATATG)n Simple_repeat Simple_repeat 6 179 0 327 211 58 0 chr12 135227773 135227929 -9054560 + (TATATG)n Simple_repeat Simple_repeat 6 170 0 471 289 23 17 chr12 135227949 135228028 -9054461 + (TATG)n Simple_repeat Simple_repeat 1 78 -96 1185 208 115 37 chr12 135228028 135228122 -9054367 + MER7A DNA MER2_type 1 86 -2952 2328 48 3 45 chr12 135228122 135228436 -9054053 - AluY SINE Alu -10 301 1 1185 208 115 37 chr12 135228436 135228663 -9053826 + MER7A DNA MER2_type 86 345 -1 471 289 23 17 chr12 135228663 135228756 -9053733 + (TATG)n Simple_repeat Simple_repeat 78 174 0 257 236 55 64 chr12 135228769 135228879 -9053610 + L1ME4a LINE L1 5939 6047 -74 21 71 0 0 chr12 135228918 135228960 -9053529 + AT_rich Low_complexity Low_complexity 1 42 0 1035 192 9 9 chr12 135229074 135229288 -9053201 - AluJb SINE Alu 0 312 99 441 293 133 28 chr12 135229867 135230116 -9052373 - L2 LINE L2 -2 3311 3037 3142 167 67 10 chr12 135230472 135231053 -9051436 + LTR31 LTR ERV1 6 619 0 568 273 78 44 chr12 135231101 135231202 -9051287 - MER113 DNA MER1_type? -86 435 339 4003 114 28 0 chr12 135231202 135231765 -9050724 + LTR19B LTR ERV1 1 579 -1 568 273 78 44 chr12 135231765 135232058 -9050431 - MER113 DNA MER1_type? -182 339 1 280 275 67 17 chr12 135232090 135232210 -9050279 - MIR3 SINE MIR -40 168 43 418 268 56 0 chr12 135232211 135232353 -9050136 + MER113 DNA MER1_type? 277 426 -95 1261 211 43 10 chr12 135232554 135232858 -9049631 + MER33 DNA MER1_type 11 324 0 1720 152 14 10 chr12 135233910 135234206 -9048283 - AluJo SINE Alu -15 297 1 1779 251 11 47 chr12 135234221 135234770 -9047719 - L1ME1 LINE L1 -5 6161 5633 778 296 71 19 chr12 135234770 135235094 -9047395 + L2 LINE L2 1838 2178 -1136 1533 216 60 51 chr12 135235103 135235556 -9046933 + MLT1C LTR MaLR 7 463 -4 1098 260 114 35 chr12 135235563 135236056 -9046433 + L2 LINE L2 2181 2712 -602 1633 95 40 4 chr12 135236175 135236428 -9046061 + L1MA2 LINE L1 6042 6303 -1 1104 212 221 3 chr12 135237081 135237397 -9045092 + MLT2B1 LTR ERVL 75 459 -61 309 229 15 99 chr12 135237445 135237576 -9044913 + L1MC3 LINE L1 6526 6645 -1140 259 111 40 36 chr12 135237578 135237633 -9044856 + MLT2C2 LTR ERVL 416 464 0 2061 124 3 3 chr12 135237821 135238120 -9044369 - AluSx SINE Alu -11 301 3 900 119 0 8 chr12 135238126 135238260 -9044229 - AluJb SINE Alu -179 133 1 715 166 18 130 chr12 135238343 135238414 -9044075 - L1MB4 LINE L1 0 6180 6103 1728 173 0 7 chr12 135238414 135238714 -9043775 + AluJo SINE Alu 1 298 -14 715 166 18 130 chr12 135238714 135238783 -9043706 - L1MB4 LINE L1 -77 6103 6071 2218 101 0 0 chr12 135238783 135239079 -9043410 - AluSq SINE Alu -17 296 1 715 166 18 130 chr12 135239079 135239160 -9043329 - L1MB4 LINE L1 -109 6071 5983 2304 90 0 0 chr12 135240047 135240346 -9042143 + AluSx SINE Alu 6 304 -8 805 164 0 0 chr12 135241277 135241405 -9041084 + FLAM_C SINE Alu 13 140 -3 2108 126 0 0 chr12 135241423 135241732 -9040757 + AluSx SINE Alu 1 309 -3 28 61 0 0 chr12 135241743 135241792 -9040697 + AT_rich Low_complexity Low_complexity 1 49 0 2074 123 10 0 chr12 135241800 135242109 -9040380 + AluSp SINE Alu 1 312 -1 227 275 104 78 chr12 135242405 135243041 -9039448 + L1ME LINE L1 797 1476 -4834 759 240 39 0 chr12 135243084 135243263 -9039226 + L1ME LINE L1 5460 5645 -508 2536 234 25 39 chr12 135243270 135243911 -9038578 - MER21B LTR ERV1 -209 654 23 401 217 0 0 chr12 135243936 135244005 -9038484 - MER21B LTR ERV1 -773 90 22 1807 155 45 3 chr12 135244038 135244347 -9038142 + MER7A DNA MER2_type 10 329 -17 1296 274 65 11 chr12 135244392 135244965 -9037524 + L1M4 LINE L1 4006 4609 -1537 212 0 36 0 chr12 135244966 135244994 -9037495 + (TTG)n Simple_repeat Simple_repeat 1 29 0 2511 49 0 10 chr12 135245130 135245437 -9037052 + AluY SINE Alu 1 304 -7 21 0 0 0 chr12 135246989 135247010 -9035479 + AT_rich Low_complexity Low_complexity 1 21 0 680 225 127 54 chr12 135247011 135247407 -9035082 + MLT1H LTR MaLR 7 526 -23 2240 75 0 0 chr12 135247559 135247877 -9034612 - AluY SINE Alu 0 318 1 531 115 13 0 chr12 135247988 135248066 -9034423 + MADE1 DNA Mariner 2 80 0 1989 121 0 13 chr12 135248110 135248244 -9034245 + AluSc SINE Alu 1 135 -174 2252 93 0 10 chr12 135248244 135248557 -9033932 + AluY SINE Alu 1 310 -1 1989 121 0 13 chr12 135248557 135248720 -9033769 + AluSc SINE Alu 135 294 -15 469 259 41 47 chr12 135248733 135248903 -9033586 - MIR SINE MIR -2 260 92 2229 62 3 40 chr12 135249342 135249646 -9032843 - AluY SINE Alu -18 293 1 664 274 207 39 chr12 135249869 135250367 -9032122 - L2 LINE L2 -5 3308 2895 252 0 0 0 chr12 135250367 135250395 -9032094 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1771 126 7 18 chr12 135250398 135250683 -9031806 - AluJo SINE Alu -30 282 1 664 274 207 39 chr12 135250683 135251001 -9031488 - L2 LINE L2 -419 2894 2347 346 109 109 0 chr12 135251001 135251056 -9031433 + Alu SINE Alu 9 69 -239 1859 146 13 7 chr12 135251716 135252018 -9030471 + AluJb SINE Alu 1 304 -8 283 102 0 34 chr12 135252028 135252087 -9030402 + (TCTCCC)n Simple_repeat Simple_repeat 3 59 0 2101 112 0 0 chr12 135252226 135252513 -9029976 - AluSx SINE Alu -25 287 1 2637 32 0 0 chr12 135253459 135253768 -9028721 - AluY SINE Alu 0 311 3 1726 120 30 40 chr12 135254178 135254479 -9028010 + AluJb SINE Alu 1 298 -14 213 266 122 86 chr12 135255246 135255385 -9027104 - L2 LINE L2 -8 3305 3162 2353 84 6 0 chr12 135255662 135255973 -9026516 + AluSp SINE Alu 1 313 0 259 305 113 21 chr12 135256061 135256202 -9026287 + MLT1J2 LTR MaLR 278 431 -19 337 324 29 10 chr12 135256355 135256457 -9026032 + L2 LINE L2 3205 3308 -5 333 0 0 0 chr12 135256746 135256783 -9025706 + (GA)n Simple_repeat Simple_repeat 2 38 0 424 228 65 49 chr12 135256828 135256951 -9025538 - MLT1K LTR MaLR -36 552 428 240 194 0 0 chr12 135256970 135257006 -9025483 + MLT1H LTR MaLR 167 202 -347 2013 96 58 3 chr12 135257012 135257303 -9025186 - AluSq SINE Alu -6 307 1 492 259 9 0 chr12 135257495 135257603 -9024886 - MER81 DNA DNA -5 109 1 305 239 54 62 chr12 135257603 135257733 -9024756 + MLT1H LTR MaLR 421 549 0 204 289 66 40 chr12 135257835 135257911 -9024578 - L3b LINE CR1 -6 1577 1500 2193 112 3 0 chr12 135258001 135258306 -9024183 + AluSp SINE Alu 1 306 -7 196 280 189 8 chr12 135258435 135258567 -9023922 + L2 LINE L2 3081 3236 -77 1817 176 17 61 chr12 135258569 135258977 -9023512 - MLT1B LTR MaLR 0 390 1 219 69 0 0 chr12 135258995 135259024 -9023465 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2133 122 0 0 chr12 135259723 135260035 -9022454 - AluSq SINE Alu -1 312 1 772 255 42 0 chr12 135260035 135260251 -9022238 - L1MD3 LINE L1 -17 7978 7754 5870 52 48 40 chr12 135260369 135261265 -9021224 - SVA Other Other -51 1335 433 5619 68 25 55 chr12 135261282 135262163 -9020326 - SVA Other Other -520 866 12 325 98 0 20 chr12 135262163 135262214 -9020275 - LTR17 LTR ERV1 -596 184 135 1084 258 59 20 chr12 135262257 135262613 -9019876 - L1ME2 LINE L1 -14 6150 5781 1839 141 0 0 chr12 135262741 135263032 -9019457 - AluSx SINE Alu -21 291 1 234 256 65 81 chr12 135263259 135263505 -9018984 - L1ME2 LINE L1 -2277 5531 5290 2084 82 61 0 chr12 135263512 135263806 -9018683 - AluSx SINE Alu 0 312 1 390 99 0 49 chr12 135263807 135263888 -9018601 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 4373 75 17 0 chr12 135263888 135264477 -9018012 - L1PA13 LINE L1 0 6163 5565 721 265 0 0 chr12 135264486 135264656 -9017833 - MLT1I LTR MaLR 0 409 240 1997 137 3 3 chr12 135264691 135264991 -9017498 + AluSx SINE Alu 1 300 -12 275 272 78 39 chr12 135265297 135265503 -9016986 + L1ME LINE L1 4619 4832 -1314 2154 113 0 0 chr12 135265537 135265830 -9016659 + AluSx SINE Alu 1 293 -19 566 259 81 106 chr12 135266262 135266734 -9015755 + L1ME LINE L1 5295 5754 -367 1182 173 44 37 chr12 135267865 135268136 -9014353 + ORSL DNA AcHobo 3 275 0 2088 109 0 7 chr12 135268614 135268917 -9013572 + AluSx SINE Alu 1 301 -11 793 293 26 13 chr12 135270158 135270390 -9012099 - MIR SINE MIR -26 236 2 217 213 16 16 chr12 135270517 135270578 -9011911 + (TA)n Simple_repeat Simple_repeat 2 62 0 325 274 115 4 chr12 135270611 135270837 -9011652 - L1ME4a LINE L1 -225 5896 5646 1194 200 126 55 chr12 135270837 135271177 -9011312 - MLT1E1 LTR MaLR 0 654 184 1903 104 54 4 chr12 135271177 135271456 -9011033 - AluSq SINE Alu -19 294 2 1194 200 126 55 chr12 135271456 135271474 -9011015 - MLT1E1 LTR MaLR -470 184 169 627 241 24 44 chr12 135271490 135271719 -9010770 - L1ME4a LINE L1 -473 5648 5420 633 167 0 0 chr12 135271848 135271956 -9010533 + L1MC/D LINE L1 4502 4609 -1537 2268 98 0 0 chr12 135271961 135272258 -9010231 + AluSg SINE Alu 1 297 -13 2297 217 27 4 chr12 135272271 135273113 -9009376 + L1MC/D LINE L1 4724 5589 -653 2052 107 3 19 chr12 135273158 135273467 -9009022 + AluSp SINE Alu 1 304 -9 370 248 144 16 chr12 135273470 135273595 -9008894 + MIR SINE MIR 49 189 -73 450 224 66 2 chr12 135273595 135273776 -9008713 + MER58A DNA MER1_type 1 224 0 607 350 65 55 chr12 135373853 135374381 -8908108 + L1ME LINE L1 542 1237 -1204 449 244 11 28 chr12 135374388 135374568 -8907921 + G-rich Low_complexity Low_complexity 3 179 0 220 237 11 17 chr12 135374601 135374778 -8907711 + G-rich Low_complexity Low_complexity 5 180 0 189 159 48 16 chr12 135374839 135374902 -8907587 + G-rich Low_complexity Low_complexity 5 69 0 465 208 35 23 chr12 135374918 135375091 -8907398 + G-rich Low_complexity Low_complexity 6 180 0 222 259 12 12 chr12 135375106 135375191 -8907298 + G-rich Low_complexity Low_complexity 6 90 0 269 273 0 0 chr12 135375832 135375898 -8906591 + MLT1K LTR MaLR 184 249 -339 481 304 78 5 chr12 135375975 135376166 -8906323 + MLT1K LTR MaLR 377 581 -7 1901 168 0 13 chr12 135376846 135377156 -8905333 - AluJo SINE Alu -6 306 1 251 301 24 0 chr12 135377214 135377297 -8905192 + MLT1I LTR MaLR 286 370 -39 185 302 94 9 chr12 135377566 135377672 -8904817 - L2 LINE L2 -5 3267 3153 382 258 10 0 chr12 135377997 135378094 -8904395 - MER3 DNA MER1_type -8 201 104 1226 234 116 39 chr12 135378586 135378761 -8903728 + MLT1C LTR MaLR 4 164 -303 2257 103 0 0 chr12 135378761 135379061 -8903428 + AluSx SINE Alu 1 300 -12 1226 234 116 39 chr12 135379061 135379316 -8903173 + MLT1C LTR MaLR 164 467 0 276 327 0 18 chr12 135379665 135379775 -8902714 - LTR16A1 LTR ERVL -294 163 56 755 299 16 8 chr12 135380276 135380520 -8901969 - MIR SINE MIR -15 247 2 1727 185 187 9 chr12 135381195 135381622 -8900867 + MLT1D LTR MaLR 1 503 -2 241 281 21 31 chr12 135381622 135381718 -8900771 + MIR SINE MIR 79 173 -89 268 225 36 45 chr12 135384348 135384459 -8898030 - MLT1J2 LTR MaLR -336 111 1 1516 191 22 44 chr12 135384527 135384888 -8897601 - MLT1A1 LTR MaLR 0 365 13 22 0 0 0 chr12 135384890 135384912 -8897577 + AT_rich Low_complexity Low_complexity 1 22 0 894 103 0 0 chr12 135385052 135385188 -8897301 + (TCCA)n Simple_repeat Simple_repeat 1 136 0 187 368 49 35 chr12 135385188 135385323 -8897166 - L2 LINE L2 -9 3304 3165 524 356 83 14 chr12 135385662 135386024 -8896465 + L2 LINE L2 2925 3311 -2 21 57 0 0 chr12 135386466 135386501 -8895988 + AT_rich Low_complexity Low_complexity 1 35 0 252 0 0 0 chr12 135386669 135386697 -8895792 + (T)n Simple_repeat Simple_repeat 1 28 0 1768 204 110 21 chr12 135387950 135388376 -8894113 + MLT1C LTR MaLR 4 467 0 1176 133 6 0 chr12 135389110 135389486 -8893003 + (TCCA)n Simple_repeat Simple_repeat 2 556 0 3001 86 7 5 chr12 135390276 135390682 -8891807 + L1PB1 LINE L1 5742 6148 -3 23 0 0 0 chr12 135390683 135390706 -8891783 + AT_rich Low_complexity Low_complexity 1 23 0 490 45 0 0 chr12 135391081 135391147 -8891342 - L1PB1 LINE L1 -39 6112 6047 502 343 139 14 chr12 135391149 135391508 -8890981 + L2 LINE L2 2907 3310 -3 902 303 16 8 chr12 135392391 135392645 -8889844 + MIR SINE MIR 6 261 -1 545 278 47 12 chr12 135393158 135393327 -8889162 + MER5B DNA MER1_type 2 176 -2 311 309 101 24 chr12 135393807 135393975 -8888514 + L1MCa LINE L1 1117 1297 -5129 25 0 0 0 chr12 135394444 135394469 -8888020 + GC_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr12 135394502 135394523 -8887966 + (CTGGGG)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chr12 135394619 135394646 -8887843 + GC_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr12 135394672 135394702 -8887787 + GC_rich Low_complexity Low_complexity 1 30 0 208 248 7 51 chr12 135394753 135394890 -8887599 + C-rich Low_complexity Low_complexity 6 136 0 * 240 258 5 68 chr12 135394828 135395018 -8887471 + (CCCCG)n Simple_repeat Simple_repeat 3 180 0 301 276 171 8 chr12 135396130 135396253 -8886236 - L2 LINE L2 -251 3062 2920 299 164 8 131 chr12 135396789 135396819 -8885670 - MER96B DNA MER1_type? -242 175 143 2227 97 0 10 chr12 135396819 135397118 -8885371 + AluSx SINE Alu 1 296 -16 299 164 8 131 chr12 135397118 135397209 -8885280 - MER96B DNA MER1_type? -274 143 69 214 325 69 44 chr12 135397701 135397904 -8884585 - L2 LINE L2 -410 2904 2697 2165 111 0 13 chr12 135398489 135398804 -8883685 + AluSx SINE Alu 1 311 -1 280 203 27 40 chr12 135398820 135398894 -8883595 - MIR SINE MIR -127 135 63 570 245 101 7 chr12 135399116 135399255 -8883234 + MIR SINE MIR 38 189 -73 384 273 0 0 chr12 135399406 135399549 -8882940 + (CA)n Simple_repeat Simple_repeat 2 144 0 309 391 9 0 chr12 135399553 135399668 -8882821 - L1MC4 LINE L1 -1339 6703 6588 432 281 0 0 chr12 135399668 135399846 -8882643 + (CA)n Simple_repeat Simple_repeat 2 179 0 24 0 0 0 chr12 135400663 135400687 -8881802 + GC_rich Low_complexity Low_complexity 1 24 0 746 317 66 6 chr12 135401045 135401408 -8881081 + L1MC4 LINE L1 7254 7638 -404 1729 264 16 18 chr12 135401414 135401914 -8880575 - LTR40a LTR ERVL -20 499 1 250 81 0 0 chr12 135401939 135401976 -8880513 + U2 snRNA snRNA 1 37 -151 539 270 55 5 chr12 135402014 135402214 -8880275 + L1MC4 LINE L1 7689 7898 -144 360 0 0 0 chr12 135402248 135402288 -8880201 + (GA)n Simple_repeat Simple_repeat 1 40 0 291 183 0 28 chr12 135402991 135403062 -8879427 - MLT1C LTR MaLR -372 95 27 673 277 22 73 chr12 135403200 135403345 -8879144 - L1MD3 LINE L1 -10 7985 7834 1814 129 18 4 chr12 135403345 135403656 -8878833 + AluJo SINE Alu 1 315 0 673 277 22 73 chr12 135403656 135403864 -8878625 - L1MD3 LINE L1 -161 7834 7647 2037 136 7 0 chr12 135404912 135405206 -8877283 - AluJb SINE Alu -16 296 1 199 387 0 0 chr12 135405800 135405875 -8876614 - L2 LINE L2 -49 3223 3149 2542 34 0 3 chr12 135405992 135406289 -8876200 + AluY SINE Alu 1 296 -15 926 293 28 20 chr12 135406324 135406682 -8875807 - L1MC4 LINE L1 -141 7901 7541 204 253 33 77 chr12 135408846 135408937 -8873552 - MER5B DNA MER1_type -41 137 51 518 285 52 36 chr12 135409379 135409572 -8872917 - MIR SINE MIR -20 242 47 249 340 19 28 chr12 135410814 135410920 -8871569 - MIR SINE MIR 0 262 158 207 370 12 0 chr12 135411311 135411392 -8871097 - MIR SINE MIR -104 158 77 439 326 22 11 chr12 135412038 135412216 -8870273 + MER5A DNA MER1_type 10 189 0 195 339 47 31 chr12 135413826 135413953 -8868536 - MIR SINE MIR -118 144 16 244 325 179 18 chr12 135418323 135418603 -8863886 + L2 LINE L2 2540 2864 -450 192 40 0 0 chr12 135420243 135420268 -8862221 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 209 159 23 0 chr12 135420310 135420354 -8862135 + GA-rich Low_complexity Low_complexity 2 46 0 1955 125 4 4 chr12 135421781 135422060 -8860429 + AluSx SINE Alu 1 279 -33 230 54 0 27 chr12 135422060 135422097 -8860392 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1366 177 8 27 chr12 135422102 135422362 -8860127 + AluJb SINE Alu 46 300 -12 296 272 10 10 chr12 135422363 135422466 -8860023 - L1ME3 LINE L1 -18 6144 6042 205 219 62 31 chr12 135423567 135423631 -8858858 + MER5A DNA MER1_type 15 80 -109 * 357 224 0 95 chr12 135423619 135423662 -8858827 - MER5A DNA MER1_type -80 109 64 2395 82 0 0 chr12 135423662 135423965 -8858524 - AluSx SINE Alu -9 303 1 357 224 0 95 chr12 135423965 135424037 -8858452 - MER5A DNA MER1_type -125 64 5 1770 148 42 0 chr12 135424063 135424346 -8858143 - AluJo SINE Alu -16 296 2 213 304 0 38 chr12 135424467 135424546 -8857943 - L2 LINE L2 0 3272 3197 222 265 0 20 chr12 135424652 135424701 -8857788 - L2 LINE L2 -8 3305 3258 182 278 0 0 chr12 135425112 135425148 -8857341 - L3 LINE CR1 -116 1461 1426 836 264 24 9 chr12 135425957 135426169 -8856320 - MER58C DNA MER1_type 0 215 1 468 226 0 0 chr12 135426341 135426465 -8856024 + (TG)n Simple_repeat Simple_repeat 1 124 0 523 293 32 27 chr12 135426474 135426662 -8855827 + MIR SINE MIR 31 219 -43 287 211 48 19 chr12 135428237 135428341 -8854148 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 345 263 102 29 chr12 135429817 135429954 -8852535 - L2 LINE L2 -6 3307 3161 2143 120 7 0 chr12 135430662 135430961 -8851528 + AluSx SINE Alu 1 301 -11 226 359 0 0 chr12 135431225 135431331 -8851158 + (TCCA)n Simple_repeat Simple_repeat 2 107 0 335 194 0 19 chr12 135431334 135431437 -8851052 + (CCCA)n Simple_repeat Simple_repeat 2 102 0 359 213 21 21 chr12 135431694 135431788 -8850701 + (CCTA)n Simple_repeat Simple_repeat 1 94 0 440 205 0 25 chr12 135431794 135431955 -8850534 + (CCCA)n Simple_repeat Simple_repeat 2 158 0 348 202 0 48 chr12 135431983 135432171 -8850318 + (CCCA)n Simple_repeat Simple_repeat 2 180 0 294 269 28 28 chr12 135432203 135432311 -8850178 + (CCCA)n Simple_repeat Simple_repeat 1 108 0 203 213 21 0 chr12 135432473 135432520 -8849969 + (CTG)n Simple_repeat Simple_repeat 2 49 0 231 333 18 9 chr12 135433336 135433447 -8849042 + LTR33A LTR ERVL 406 517 -6 2008 143 3 0 chr12 135433557 135433858 -8848631 - AluSg SINE Alu -8 302 1 2497 52 3 0 chr12 135434679 135434988 -8847501 - AluY SINE Alu 0 311 2 721 316 55 46 chr12 135435754 135435939 -8846550 - L2 LINE L2 0 3313 3131 2198 113 0 7 chr12 135435939 135436249 -8846240 - AluSq SINE Alu -5 308 1 721 316 55 46 chr12 135436249 135436516 -8845973 - L2 LINE L2 -182 3131 2857 413 386 30 5 chr12 135438385 135438587 -8843902 + MIR SINE MIR 53 259 -3 229 284 27 36 chr12 135438588 135438677 -8843812 + MIR SINE MIR 70 156 -65 519 230 103 0 chr12 135439240 135439366 -8843123 + MIR SINE MIR 28 166 -96 1945 170 3 0 chr12 135439407 135439718 -8842771 + AluJb SINE Alu 1 312 0 205 103 0 0 chr12 135440402 135440431 -8842058 + MIR SINE MIR 117 145 -117 261 275 0 0 chr12 135441758 135441827 -8840662 + Charlie8 DNA MER1_type 70 138 -2279 195 225 0 0 chr12 135442759 135442799 -8839690 - L3 LINE CR1 -116 1461 1422 931 262 33 8 chr12 135443235 135443479 -8839010 - MIR SINE MIR 0 262 13 799 183 84 70 chr12 135443653 135443866 -8838623 - MER20 DNA MER1_type -3 216 1 210 286 0 0 chr12 135443872 135443928 -8838561 + L3 LINE CR1 1426 1481 -96 287 298 152 14 chr12 135443965 135444112 -8838377 + MIR SINE MIR 8 171 -37 1726 152 24 7 chr12 135444701 135444990 -8837499 - AluJo SINE Alu -18 294 1 401 324 155 14 chr12 135445942 135446232 -8836257 + L2 LINE L2 2899 3229 -84 200 318 146 0 chr12 135447369 135447479 -8835010 + MIR3 SINE MIR 70 195 -13 * 265 127 164 0 chr12 135447475 135447530 -8834959 - MIR SINE MIR -119 143 80 223 284 15 15 chr12 135447673 135447740 -8834749 - MIR3 SINE MIR -38 170 104 497 307 93 23 chr12 135448091 135448511 -8833978 + L2 LINE L2 2553 3019 -253 1503 187 3 21 chr12 135449481 135449770 -8832719 - AluJo SINE Alu -23 289 6 860 143 7 20 chr12 135449770 135449917 -8832572 - AluJo SINE Alu -167 145 1 677 236 124 0 chr12 135449917 135450078 -8832411 + MER58A DNA MER1_type 40 220 -4 282 237 0 0 chr12 135450114 135450190 -8832299 + (TG)n Simple_repeat Simple_repeat 1 76 0 213 237 0 0 chr12 135450227 135450286 -8832203 + (CGTG)n Simple_repeat Simple_repeat 4 62 0 216 228 0 0 chr12 135450319 135450376 -8832113 + (TG)n Simple_repeat Simple_repeat 1 57 0 249 250 0 0 chr12 135450409 135450485 -8832004 + (TG)n Simple_repeat Simple_repeat 1 76 0 210 222 0 0 chr12 135450518 135450572 -8831917 + (TG)n Simple_repeat Simple_repeat 1 54 0 204 261 0 0 chr12 135450605 135450670 -8831819 + (TG)n Simple_repeat Simple_repeat 2 66 0 189 269 0 0 chr12 135450698 135450765 -8831724 + (TG)n Simple_repeat Simple_repeat 2 68 0 298 374 75 5 chr12 135450830 135451017 -8831472 - MIR SINE MIR -14 248 49 653 260 45 5 chr12 135451147 135451347 -8831142 - MIR SINE MIR -51 211 4 232 250 0 57 chr12 135451644 135451732 -8830757 + MER117 DNA MER1_type 78 160 -37 507 298 130 51 chr12 135452645 135453157 -8829332 + L2 LINE L2 2487 3038 -275 197 328 67 45 chr12 135453213 135453347 -8829142 + L2 LINE L2 3160 3296 -17 707 120 19 0 chr12 135453366 135453474 -8829015 + AluSc SINE Alu 199 308 -1 523 295 92 35 chr12 135454066 135454293 -8828196 + Charlie8 DNA MER1_type 26 265 -2152 190 224 41 0 chr12 135457178 135457227 -8825262 + L2 LINE L2 3137 3187 -85 1382 246 132 34 chr12 135458493 135458999 -8823490 + L1MB7 LINE L1 5551 6119 -65 1526 189 17 37 chr12 135458999 135459295 -8823194 - AluJo SINE Alu -22 290 1 1382 246 132 34 chr12 135459295 135459350 -8823139 + L1MB7 LINE L1 6119 6167 -17 22 0 0 0 chr12 135459466 135459488 -8823001 + AT_rich Low_complexity Low_complexity 1 22 0 2070 137 3 6 chr12 135460098 135460411 -8822078 - AluSx SINE Alu 0 312 1 204 317 17 0 chr12 135460570 135460630 -8821859 + MIR SINE MIR 89 149 -113 299 234 265 45 chr12 135461002 135461361 -8821128 + L2 LINE L2 2826 3263 -50 227 227 91 15 chr12 135461571 135461637 -8820852 - MIR3 SINE MIR -51 157 87 194 253 27 13 chr12 135463713 135463788 -8818701 + L2 LINE L2 2878 2953 -360 842 288 107 7 chr12 135463798 135464211 -8818278 + MLT1C LTR MaLR 7 460 -7 232 309 72 0 chr12 135464218 135464315 -8818174 + L2 LINE L2 2955 3058 -255 416 248 16 24 chr12 135465449 135465574 -8816915 + MIR SINE MIR 48 171 -91 180 156 0 89 chr12 135466552 135466597 -8815892 + MIR SINE MIR 108 148 -114 239 319 33 11 chr12 135466878 135466969 -8815520 + L3 LINE CR1 1049 1141 -436 332 272 119 15 chr12 135467491 135467692 -8814797 - MIR SINE MIR -30 232 8 203 302 32 0 chr12 135467749 135467812 -8814677 + MIR SINE MIR 80 144 -118 543 310 12 12 chr12 135467841 135468012 -8814477 - MER5A DNA MER1_type -1 188 18 233 316 0 0 chr12 135468006 135468063 -8814426 + MIR SINE MIR 195 251 -11 * 350 273 227 0 chr12 135468133 135468261 -8814228 + MIR SINE MIR 28 184 -78 2148 117 0 7 chr12 135470041 135470348 -8812141 + AluSx SINE Alu 1 305 -7 596 363 78 15 chr12 135471313 135471712 -8810777 - L2 LINE L2 -5 3308 2885 1266 236 116 7 chr12 135472155 135472562 -8809927 + MLT1C LTR MaLR 1 451 -16 219 321 161 0 chr12 135473448 135473529 -8808960 - MIR SINE MIR -1 261 168 1047 254 157 18 chr12 135473531 135474065 -8808424 + L2 LINE L2 2709 3312 -1 319 274 48 0 chr12 135474084 135474168 -8808321 - MIR SINE MIR -143 119 32 22 0 0 0 chr12 135474411 135474433 -8808056 + GC_rich Low_complexity Low_complexity 1 22 0 730 272 83 0 chr12 135475269 135475497 -8806992 - MIR SINE MIR -1 261 15 246 81 0 0 chr12 135475516 135475553 -8806936 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 913 272 18 0 chr12 135475610 135475834 -8806655 - MIR SINE MIR -34 228 1 518 305 48 5 chr12 135476134 135476321 -8806168 - MIR SINE MIR -20 242 48 215 359 0 0 chr12 135476490 135476582 -8805907 + G-rich Low_complexity Low_complexity 1 92 0 184 262 49 0 chr12 135477138 135477199 -8805290 + MIR SINE MIR 60 123 -139 199 244 0 0 chr12 135477449 135477494 -8804995 + MIR SINE MIR 106 150 -112 247 146 36 0 chr12 135477513 135477568 -8804921 + GA-rich Low_complexity Low_complexity 3 59 0 339 25 0 0 chr12 135479685 135479725 -8802764 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 211 176 20 39 chr12 135480536 135480587 -8801902 + G-rich Low_complexity Low_complexity 6 55 0 197 32 0 32 chr12 135481353 135481384 -8801105 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 232 283 9 35 chr12 135481776 135481889 -8800600 + GA-rich Low_complexity Low_complexity 6 115 0 382 210 25 25 chr12 135481895 135482392 -8800097 + G-rich Low_complexity Low_complexity 1 497 0 262 326 82 0 chr12 135483849 135483984 -8798505 - MIR3 SINE MIR -62 146 1 246 235 184 20 chr12 135484350 135484448 -8798041 - MIR SINE MIR -40 222 109 237 271 47 24 chr12 135484609 135484694 -8797795 + MIR SINE MIR 106 192 -70 184 306 42 14 chr12 135485280 135485352 -8797137 + MIR SINE MIR 84 157 -105 306 363 57 8 chr12 135485357 135485481 -8797008 + MIR SINE MIR 33 162 -100 572 297 77 26 chr12 135486546 135486741 -8795748 + MIR SINE MIR 47 251 -11 2598 175 44 76 chr12 135486744 135486852 -8795637 + MER44D DNA MER2_type 1 111 -2376 1875 128 30 20 chr12 135486852 135487149 -8795340 - AluSg SINE Alu -10 300 1 2598 175 44 76 chr12 135487149 135487421 -8795068 + MER44D DNA MER2_type 111 415 -2072 2206 104 0 10 chr12 135487421 135487729 -8794760 - AluSx SINE Alu -7 305 1 2598 175 44 76 chr12 135487729 135487914 -8794575 + MER44D DNA MER2_type 415 604 -1 2453 164 7 7 chr12 135487934 135488342 -8794147 - L1MB5 LINE L1 0 6174 5767 211 156 44 0 chr12 135488365 135488410 -8794079 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 395 305 85 13 chr12 135488586 135488905 -8793584 - L2 LINE L2 -266 3047 2601 245 356 75 20 chr12 135489552 135489698 -8792791 + MIR SINE MIR 80 233 -29 350 274 35 9 chr12 135490053 135490166 -8792323 - MIR SINE MIR -67 195 80 472 247 118 16 chr12 135490455 135490641 -8791848 + MER20 DNA MER1_type 15 219 0 240 307 59 10 chr12 135490718 135490819 -8791670 - MIR SINE MIR -73 135 30 206 333 14 14 chr12 135490840 135490912 -8791577 - MER5A DNA MER1_type -67 122 51 392 274 28 0 chr12 135491518 135491624 -8790865 - MIR SINE MIR -41 221 113 268 209 30 30 chr12 135491704 135491771 -8790718 + MER116 DNA Mariner 7 73 -7 1818 158 9 22 chr12 135492475 135492791 -8789698 + AluJb SINE Alu 1 312 0 1626 174 82 92 chr12 135493065 135493130 -8789359 - MLT1D LTR MaLR -21 484 420 1800 140 24 14 chr12 135493130 135493423 -8789066 - AluJo SINE Alu -16 296 1 1626 174 82 92 chr12 135493423 135493846 -8788643 - MLT1D LTR MaLR -85 420 1 291 299 17 51 chr12 135494057 135494174 -8788315 - L3 LINE CR1 -954 623 511 558 240 16 0 chr12 135495509 135495638 -8786851 + MIR SINE MIR 73 203 -59 226 268 24 24 chr12 135495956 135496038 -8786451 - MIR SINE MIR -91 171 90 324 327 53 0 chr12 135496381 135496494 -8785995 - MIR SINE MIR -33 229 111 601 312 189 19 chr12 135496793 135497015 -8785474 - L2 LINE L2 -7 3306 3123 1980 104 42 10 chr12 135497015 135497303 -8785186 + AluSx SINE Alu 1 297 -15 601 312 189 19 chr12 135497303 135497641 -8784848 - L2 LINE L2 -190 3123 2641 825 246 44 6 chr12 135497654 135498038 -8784451 - MLT1C LTR MaLR 0 467 51 273 290 99 50 chr12 135498746 135499008 -8783481 - L2 LINE L2 -459 2855 2581 199 226 226 35 chr12 135500465 135500580 -8781909 + MIR3 SINE MIR 5 141 -67 2122 152 12 20 chr12 135500625 135500968 -8781521 - MER58B DNA MER1_type -1 340 1 326 189 90 63 chr12 135501698 135501809 -8780680 - MER3 DNA MER1_type 0 209 96 371 229 73 0 chr12 135501878 135501974 -8780515 - MER3 DNA MER1_type -105 104 2 1865 165 0 0 chr12 135502171 135502462 -8780027 + AluJo SINE Alu 1 291 -21 630 213 23 11 chr12 135502579 135502753 -8779736 - MER3 DNA MER1_type -18 191 16 241 304 96 26 chr12 135502774 135502889 -8779600 - MIR SINE MIR -90 172 50 311 294 105 21 chr12 135503347 135503490 -8778999 - MIR SINE MIR -59 203 49 253 337 23 0 chr12 135503549 135503635 -8778854 - MIR SINE MIR -63 145 58 214 179 250 0 chr12 135503880 135503936 -8778553 + MIR SINE MIR 80 149 -113 757 200 106 1 chr12 135504362 135504556 -8777933 + MIR SINE MIR 48 262 0 198 0 0 0 chr12 135504958 135504980 -8777509 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 603 275 6 19 chr12 135506145 135506305 -8776184 - MIR SINE MIR -75 187 30 30 83 0 0 chr12 135507944 135508016 -8774473 + GC_rich Low_complexity Low_complexity 1 72 0 378 42 0 0 chr12 135508027 135508075 -8774414 + (CGG)n Simple_repeat Simple_repeat 1 48 0 21 57 0 0 chr12 135508139 135508174 -8774315 + GC_rich Low_complexity Low_complexity 1 35 0 211 268 0 0 chr12 135508214 135508270 -8774219 + (CACG)n Simple_repeat Simple_repeat 4 59 0 281 196 54 0 chr12 135508709 135508765 -8773724 + L2 LINE L2 3189 3247 -66 183 42 0 0 chr12 135508868 135508892 -8773597 + (CA)n Simple_repeat Simple_repeat 1 24 0 541 278 181 51 chr12 135510685 135510877 -8771612 + L2 LINE L2 2825 2991 -322 2268 104 3 0 chr12 135510877 135511185 -8771304 + AluSp SINE Alu 1 309 -4 541 278 181 51 chr12 135511185 135511424 -8771065 + L2 LINE L2 2991 3312 -1 617 133 0 0 chr12 135511606 135511689 -8770800 + FRAM SINE Alu 69 151 -25 2249 90 10 0 chr12 135511702 135512002 -8770487 + AluSx SINE Alu 1 303 -9 1812 105 4 0 chr12 135512405 135512652 -8769837 + AluSx SINE Alu 55 302 -10 979 207 0 0 chr12 135512751 135512915 -8769574 - FRAM SINE Alu -2 164 1 213 246 174 0 chr12 135512922 135512991 -8769498 - L2 LINE L2 -5 3308 3228 335 308 13 31 chr12 135513634 135513793 -8768696 + L1MC4a LINE L1 5782 5937 -1871 2096 215 5 23 chr12 135513832 135514079 -8768410 - L1PB4 LINE L1 -8 6148 5911 2041 100 40 7 chr12 135514079 135514378 -8768111 - AluSx SINE Alu -3 309 1 2096 215 5 23 chr12 135514378 135514562 -8767927 - L1PB4 LINE L1 -245 5911 5725 755 260 192 47 chr12 135514576 135514785 -8767704 - L2 LINE L2 -9 3304 3127 2080 123 0 0 chr12 135514785 135515085 -8767404 + AluSx SINE Alu 1 300 -12 755 260 192 47 chr12 135515085 135515302 -8767187 - L2 LINE L2 -186 3127 2816 407 299 163 24 chr12 135516648 135516942 -8765547 - L2 LINE L2 -123 3190 2856 374 82 49 16 chr12 135516939 135517000 -8765489 + MIR3 SINE MIR 94 156 -52 * 533 282 7 0 chr12 135517085 135517227 -8765262 - L2 LINE L2 -250 3063 2921 436 286 15 8 chr12 135517845 135517978 -8764511 + MIR SINE MIR 100 233 -29 1230 206 15 1 chr12 135518172 135518625 -8763864 - MLT1D LTR MaLR -1 504 3 405 277 0 10 chr12 135518832 135518933 -8763556 - L2 LINE L2 -20 3252 3153 1002 284 145 16 chr12 135518955 135519458 -8763031 - MLT1L LTR MaLR -25 590 23 655 244 155 5 chr12 135519459 135519652 -8762837 + MIR SINE MIR 41 262 0 270 344 138 32 chr12 135519883 135520101 -8762388 - MIR SINE MIR 0 262 22 1734 198 36 29 chr12 135520175 135520289 -8762200 + L1MB5 LINE L1 5360 5472 -708 2239 102 0 3 chr12 135520289 135520593 -8761896 - AluSc SINE Alu -6 303 1 1734 198 36 29 chr12 135520593 135520897 -8761592 + L1MB5 LINE L1 5472 5781 -399 1062 201 53 32 chr12 135520899 135521182 -8761307 + L1MB5 LINE L1 5884 6172 -2 625 141 16 43 chr12 135521182 135521366 -8761123 + GA-rich Low_complexity Low_complexity 1 179 0 647 321 107 10 chr12 135521927 135522310 -8760179 + L2 LINE L2 2041 2460 -854 184 285 6 139 chr12 135522552 135522622 -8759867 - MIR SINE MIR -67 141 120 2656 32 0 0 chr12 135522622 135522932 -8759557 + AluY SINE Alu 2 311 0 184 285 6 139 chr12 135522932 135523000 -8759489 - MIR SINE MIR -88 120 45 697 303 117 14 chr12 135523028 135523464 -8759025 - MLT1L LTR MaLR -4 611 131 528 63 0 63 chr12 135523659 135523690 -8758799 + MADE1 DNA Mariner 5 36 -44 2153 106 3 41 chr12 135523690 135524010 -8758479 - AluSx SINE Alu -4 308 1 528 63 0 63 chr12 135524010 135524057 -8758432 + MADE1 DNA Mariner 36 78 -2 343 130 14 14 chr12 135524096 135524165 -8758324 + CT-rich Low_complexity Low_complexity 4 72 0 243 0 0 0 chr12 135524212 135524239 -8758250 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 1422 175 45 11 chr12 135524239 135524508 -8757981 - AluJo SINE Alu -34 278 1 351 221 96 10 chr12 135524572 135524676 -8757813 + L1ME3A LINE L1 5522 5634 -536 1409 178 50 8 chr12 135524678 135524962 -8757527 + AluJb SINE Alu 22 316 0 855 248 113 50 chr12 135524982 135525044 -8757445 + L1ME3A LINE L1 5705 5762 -408 1963 86 36 14 chr12 135525044 135525373 -8757116 + AluSx SINE Alu 1 335 0 855 248 113 50 chr12 135525373 135525543 -8756946 + L1ME3A LINE L1 5762 5920 -250 2017 123 0 13 chr12 135525543 135525843 -8756646 + AluSx SINE Alu 1 296 -16 855 248 113 50 chr12 135525843 135526041 -8756448 + L1ME3A LINE L1 5920 6162 -8 285 265 68 26 chr12 135526393 135526510 -8755979 - MER117 DNA MER1_type -8 189 68 1959 157 0 0 chr12 135526550 135526849 -8755640 - AluJo SINE Alu -11 301 3 262 326 82 0 chr12 135527485 135527620 -8754869 - MIR3 SINE MIR -62 146 1 246 235 184 20 chr12 135527986 135528084 -8754405 - MIR SINE MIR -40 222 109 237 271 47 24 chr12 135528245 135528330 -8754159 + MIR SINE MIR 106 192 -70 184 306 42 14 chr12 135528916 135528988 -8753501 + MIR SINE MIR 84 157 -105 306 363 57 8 chr12 135528993 135529117 -8753372 + MIR SINE MIR 33 162 -100 572 297 77 26 chr12 135530182 135530377 -8752112 + MIR SINE MIR 47 251 -11 2620 173 44 76 chr12 135530380 135530488 -8752001 + MER44D DNA MER2_type 1 111 -2376 1875 128 30 20 chr12 135530488 135530785 -8751704 - AluSg SINE Alu -10 300 1 2620 173 44 76 chr12 135530785 135531057 -8751432 + MER44D DNA MER2_type 111 415 -2072 2206 104 0 10 chr12 135531057 135531365 -8751124 - AluSx SINE Alu -7 305 1 2620 173 44 76 chr12 135531365 135531550 -8750939 + MER44D DNA MER2_type 415 604 -1 2453 164 7 7 chr12 135531570 135531978 -8750511 - L1MB5 LINE L1 0 6174 5767 211 156 44 0 chr12 135532001 135532046 -8750443 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 395 305 85 13 chr12 135532222 135532541 -8749948 - L2 LINE L2 -266 3047 2601 245 356 75 20 chr12 135533188 135533334 -8749155 + MIR SINE MIR 80 233 -29 350 274 35 9 chr12 135533689 135533802 -8748687 - MIR SINE MIR -67 195 80 461 259 119 11 chr12 135534091 135534276 -8748213 + MER20 DNA MER1_type 15 219 0 240 307 59 10 chr12 135534353 135534454 -8748035 - MIR SINE MIR -73 135 30 206 333 14 14 chr12 135534475 135534547 -8747942 - MER5A DNA MER1_type -67 122 51 406 264 28 0 chr12 135535153 135535259 -8747230 - MIR SINE MIR -41 221 113 268 209 30 30 chr12 135535339 135535406 -8747083 + MER116 DNA Mariner 7 73 -7 1798 161 9 22 chr12 135536110 135536426 -8746063 + AluJb SINE Alu 1 312 0 1601 176 82 92 chr12 135536700 135536765 -8745724 - MLT1D LTR MaLR -21 484 420 1800 140 24 14 chr12 135536765 135537058 -8745431 - AluJo SINE Alu -16 296 1 1601 176 82 92 chr12 135537058 135537481 -8745008 - MLT1D LTR MaLR -85 420 1 291 299 17 51 chr12 135537692 135537809 -8744680 - L3 LINE CR1 -954 623 511 558 240 16 0 chr12 135539144 135539273 -8743216 + MIR SINE MIR 73 203 -59 226 268 24 24 chr12 135539591 135539673 -8742816 - MIR SINE MIR -91 171 90 324 327 53 0 chr12 135540016 135540129 -8742360 - MIR SINE MIR -33 229 111 604 310 189 19 chr12 135540428 135540650 -8741839 - L2 LINE L2 -7 3306 3123 1869 118 42 10 chr12 135540650 135540939 -8741550 + AluSx SINE Alu 1 298 -14 604 310 189 19 chr12 135540939 135541277 -8741212 - L2 LINE L2 -190 3123 2641 825 246 44 6 chr12 135541290 135541674 -8740815 - MLT1C LTR MaLR 0 467 51 279 298 95 46 chr12 135542381 135542643 -8739846 - L2 LINE L2 -459 2855 2581 187 255 29 78 chr12 135542888 135542990 -8739499 - MIR SINE MIR -80 182 86 199 226 226 35 chr12 135544100 135544215 -8738274 + MIR3 SINE MIR 5 141 -67 2122 152 12 20 chr12 135544260 135544603 -8737886 - MER58B DNA MER1_type -1 340 1 326 189 90 63 chr12 135545333 135545444 -8737045 - MER3 DNA MER1_type 0 209 96 371 229 73 0 chr12 135545513 135545609 -8736880 - MER3 DNA MER1_type -105 104 2 1865 165 0 0 chr12 135545806 135546097 -8736392 + AluJo SINE Alu 1 291 -21 630 213 23 11 chr12 135546214 135546388 -8736101 - MER3 DNA MER1_type -18 191 16 241 304 96 26 chr12 135546409 135546524 -8735965 - MIR SINE MIR -90 172 50 311 294 105 21 chr12 135546982 135547125 -8735364 - MIR SINE MIR -59 203 49 253 326 21 11 chr12 135547180 135547275 -8735214 - MIR SINE MIR -114 148 53 214 179 250 0 chr12 135547515 135547571 -8734918 + MIR SINE MIR 80 149 -113 757 200 106 1 chr12 135547997 135548191 -8734298 + MIR SINE MIR 48 262 0 198 0 0 0 chr12 135548593 135548615 -8733874 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 31 44 0 0 chr12 135549613 135549658 -8732831 + GC_rich Low_complexity Low_complexity 1 45 0 229 167 0 0 chr12 135550017 135550059 -8732430 + GA-rich Low_complexity Low_complexity 3 44 0 293 405 0 7 chr12 135551293 135551441 -8731048 + L2 LINE L2 2660 2806 -508 455 280 130 0 chr12 135551492 135551692 -8730797 + L2 LINE L2 2924 3149 -164 861 259 19 14 chr12 135554811 135555023 -8727466 + MIR SINE MIR 30 242 -20 220 330 46 0 chr12 135555203 135555312 -8727177 - MIR SINE MIR -134 128 15 213 306 172 38 chr12 135555321 135555478 -8727011 - MIR SINE MIR -12 250 73 459 272 66 7 chr12 135555524 135555576 -8726913 - MIR SINE MIR -40 222 174 1512 243 122 7 chr12 135555576 135555995 -8726494 + MLT1C LTR MaLR 1 467 0 459 272 66 7 chr12 135555995 135556078 -8726411 - MIR SINE MIR -88 174 79 1694 209 73 29 chr12 135557034 135557513 -8724976 + L1MB5 LINE L1 5673 6172 -2 201 261 102 34 chr12 135559584 135559672 -8722817 - MIR SINE MIR -77 185 92 439 235 65 41 chr12 135559793 135559963 -8722526 - MER20 DNA MER1_type -45 174 1 201 178 89 0 chr12 135561056 135561101 -8721388 - MIR SINE MIR -56 152 104 293 274 82 15 chr12 135561130 135561265 -8721224 - Charlie8 DNA MER1_type -2147 270 127 502 345 15 10 chr12 135561332 135561532 -8720957 - MIR SINE MIR -17 245 45 1951 157 0 19 chr12 135562074 135562386 -8720103 + AluJo SINE Alu 1 306 -6 291 161 0 0 chr12 135563589 135563645 -8718844 + CT-rich Low_complexity Low_complexity 6 61 0 426 39 0 0 chr12 135563663 135563715 -8718774 + (CTG)n Simple_repeat Simple_repeat 1 52 0 442 336 28 24 chr12 135563940 135564151 -8718338 + MIR SINE MIR 16 227 -35 241 234 0 0 chr12 135564292 135564339 -8718150 + MIR SINE MIR 107 153 -55 233 293 163 0 chr12 135565997 135566120 -8716369 - MIR SINE MIR -40 222 80 737 196 34 56 chr12 135567064 135567243 -8715246 + MER5B DNA MER1_type 4 178 0 737 197 138 11 chr12 135567249 135567437 -8715052 - MER58A DNA MER1_type 0 224 13 338 244 19 2 chr12 135567486 135567590 -8714899 - MER5A DNA MER1_type -71 107 14 381 298 133 15 chr12 135568035 135568235 -8714254 - MIR SINE MIR 0 262 36 276 176 0 20 chr12 135568909 135568960 -8713529 - L2 LINE L2 0 3272 3223 2475 59 0 0 chr12 135569224 135569528 -8712961 + AluY SINE Alu 1 304 -7 802 281 25 68 chr12 135569564 135569616 -8712873 - MER63B DNA MER1_type -709 353 300 1364 194 40 47 chr12 135569616 135569915 -8712574 + AluJo SINE Alu 1 297 -15 802 281 25 68 chr12 135569915 135570229 -8712260 - MER63B DNA MER1_type -762 300 3 539 326 86 20 chr12 135570381 135570777 -8711712 + L2 LINE L2 2819 3240 -73 1802 140 3 14 chr12 135570836 135571128 -8711361 - AluJb SINE Alu -21 291 3 390 245 0 68 chr12 135572047 135572210 -8710279 + G-rich Low_complexity Low_complexity 4 155 0 233 148 0 19 chr12 135572210 135572264 -8710225 + (GA)n Simple_repeat Simple_repeat 1 53 0 242 296 0 26 chr12 135572279 135572394 -8710095 + GA-rich Low_complexity Low_complexity 1 112 0 189 0 0 0 chr12 135572425 135572446 -8710043 + (GA)n Simple_repeat Simple_repeat 2 22 0 382 288 89 27 chr12 135573880 135574026 -8708463 + MER5A DNA MER1_type 30 184 -5 237 253 13 13 chr12 135574855 135574934 -8707555 + GA-rich Low_complexity Low_complexity 1 79 0 297 269 123 8 chr12 135575358 135575488 -8707001 + MIR SINE MIR 45 189 -73 201 229 0 0 chr12 135575530 135575578 -8706911 + (CACCAT)n Simple_repeat Simple_repeat 1 48 0 328 243 208 34 chr12 135577150 135577425 -8705064 + Charlie8 DNA MER1_type 86 276 -2141 2012 136 3 16 chr12 135579653 135579969 -8702520 + AluSx SINE Alu 1 312 0 929 254 9 0 chr12 135581103 135581316 -8701173 - MER58A DNA MER1_type -9 215 1 986 258 17 9 chr12 135581961 135582194 -8700295 + MIR SINE MIR 4 238 -24 203 138 0 0 chr12 135584215 135584244 -8698245 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 360 268 134 0 chr12 135585700 135585797 -8696692 - MIR SINE MIR -90 172 63 1353 109 43 52 chr12 135586868 135586966 -8695523 - MER30 DNA MER1_type 0 230 133 2427 90 0 0 chr12 135586966 135587277 -8695212 + AluY SINE Alu 1 311 0 1353 109 43 52 chr12 135587277 135587408 -8695081 - MER30 DNA MER1_type -97 133 3 253 304 22 44 chr12 135587634 135587770 -8694719 + MIR SINE MIR 26 165 -43 1348 234 92 3 chr12 135588014 135588395 -8694094 + MLT1C LTR MaLR 10 424 -43 396 0 0 0 chr12 135589918 135589962 -8692527 + (TG)n Simple_repeat Simple_repeat 2 45 0 368 287 0 11 chr12 135590282 135590376 -8692113 + MER5A DNA MER1_type 21 113 -76 713 279 0 0 chr12 135590467 135590646 -8691843 + MER3 DNA MER1_type 5 183 -26 388 286 101 10 chr12 135591022 135591221 -8691268 + LTR33 LTR ERVL 2 218 -303 490 191 103 37 chr12 135591840 135591976 -8690513 + MIR SINE MIR 48 192 -70 311 253 11 0 chr12 135592184 135592271 -8690218 - MER102a DNA MER1_type 0 330 243 344 260 0 12 chr12 135592727 135592972 -8689517 + (CA)n Simple_repeat Simple_repeat 1 241 0 436 206 0 27 chr12 135593014 135593198 -8689291 + (CA)n Simple_repeat Simple_repeat 2 180 0 501 174 12 17 chr12 135593227 135593399 -8689090 + (CAGA)n Simple_repeat Simple_repeat 2 172 0 409 189 0 53 chr12 135593409 135593599 -8688890 + (CA)n Simple_repeat Simple_repeat 1 180 0 478 198 11 6 chr12 135593654 135593831 -8688658 + (CAGA)n Simple_repeat Simple_repeat 1 178 0 226 221 11 33 chr12 135593844 135594025 -8688464 + (CAGA)n Simple_repeat Simple_repeat 4 180 0 288 218 30 10 chr12 135594043 135594144 -8688345 + (CAGA)n Simple_repeat Simple_repeat 1 103 0 384 323 47 16 chr12 135594266 135594458 -8688031 - MER3 DNA MER1_type -7 202 5 23 33 0 0 chr12 135594726 135594756 -8687733 + GC_rich Low_complexity Low_complexity 1 30 0 188 65 0 32 chr12 135595421 135595452 -8687037 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 600 14 0 0 chr12 135595458 135595527 -8686962 + (CA)n Simple_repeat Simple_repeat 2 70 0 210 299 13 13 chr12 135596159 135596236 -8686253 + L2 LINE L2 2647 2723 -591 328 257 81 44 chr12 135596336 135596472 -8686017 + L1MC4 LINE L1 7803 7943 -99 346 297 14 35 chr12 135596691 135596836 -8685653 + L2 LINE L2 2911 3052 -261 963 245 60 0 chr12 135597400 135597616 -8684873 + MIR SINE MIR 12 240 -22 2090 119 10 0 chr12 135598417 135598720 -8683769 + AluSx SINE Alu 1 306 -6 279 54 0 0 chr12 135598721 135598758 -8683731 + (AAATG)n Simple_repeat Simple_repeat 4 40 0 642 174 0 0 chr12 135600281 135600448 -8682041 + GA-rich Low_complexity Low_complexity 2 168 0 362 206 0 23 chr12 135600475 135600650 -8681839 + GA-rich Low_complexity Low_complexity 2 172 0 517 70 32 107 chr12 135600670 135600857 -8681632 + (CAGAGA)n Simple_repeat Simple_repeat 3 175 0 205 186 0 0 chr12 135600859 135600902 -8681587 + GA-rich Low_complexity Low_complexity 2 44 0 467 96 25 76 chr12 135600907 135601064 -8681425 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 259 231 0 0 chr12 135601069 135601134 -8681355 + GA-rich Low_complexity Low_complexity 2 66 0 446 68 42 109 chr12 135601136 135601328 -8681161 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 488 85 32 90 chr12 135601377 135601565 -8680924 + (CAGAGA)n Simple_repeat Simple_repeat 3 179 0 186 286 0 0 chr12 135601621 135601670 -8680819 - MIR SINE MIR -73 135 87 335 146 0 34 chr12 135601735 135601824 -8680665 + (GA)n Simple_repeat Simple_repeat 2 87 0 812 320 119 28 chr12 135602418 135602923 -8679566 - L2 LINE L2 -1 3312 2770 1766 260 48 10 chr12 135602934 135603515 -8678974 + L1MD3 LINE L1 6684 7286 -709 406 211 42 0 chr12 135603516 135603611 -8678878 + MLT1F1 LTR MaLR 21 119 -448 1145 234 74 58 chr12 135603695 135603981 -8678508 + L1MD3 LINE L1 7544 7824 -171 206 0 0 65 chr12 135603981 135604012 -8678477 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1813 129 18 4 chr12 135604014 135604292 -8678197 - AluJo SINE Alu -30 282 1 1145 234 74 58 chr12 135604292 135604437 -8678052 + L1MD3 LINE L1 7824 7985 -10 1099 214 56 68 chr12 135604575 135605018 -8677471 + MLT1C LTR MaLR 27 464 -3 344 320 69 48 chr12 135605271 135605342 -8677147 + Charlie8 DNA MER1_type 4 72 -269 2313 100 0 6 chr12 135605342 135605653 -8676836 - AluSg SINE Alu -1 309 1 344 320 69 48 chr12 135605653 135605812 -8676677 + Charlie8 DNA MER1_type 72 239 -102 182 333 14 14 chr12 135605948 135606017 -8676472 - L2 LINE L2 -3 3310 3242 256 271 8 49 chr12 135606353 135606475 -8676014 - L2 LINE L2 -213 3059 2943 269 247 0 14 chr12 135606649 135606722 -8675767 - MIR SINE MIR -89 119 48 439 246 214 8 chr12 135607558 135607684 -8674805 + L2 LINE L2 3162 3313 0 239 243 175 10 chr12 135607772 135607875 -8674614 - MIR3 SINE MIR -80 128 9 282 175 0 16 chr12 135608044 135608107 -8674382 - L3 LINE CR1 -103 1474 1413 308 306 169 23 chr12 135608107 135608536 -8673953 + L2 LINE L2 2615 3108 -205 2238 94 0 0 chr12 135608780 135609067 -8673422 - AluSx SINE Alu -24 288 2 1756 132 56 26 chr12 135609534 135609837 -8672652 - AluJo SINE Alu 0 312 1 474 283 35 29 chr12 135609839 135610012 -8672477 + L2 LINE L2 3138 3311 -2 335 388 34 7 chr12 135612365 135612512 -8669977 + L1ME LINE L1 5672 5822 -340 691 222 82 12 chr12 135612660 135612831 -8669658 + MIR SINE MIR 43 225 -37 275 279 154 0 chr12 135613124 135613260 -8669229 + MLT1H LTR MaLR 384 540 -9 239 329 87 11 chr12 135613263 135613394 -8669095 - MIR SINE MIR -50 158 33 186 128 0 0 chr12 135613433 135613472 -8669017 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 421 313 25 25 chr12 135614251 135614411 -8668078 + MIR SINE MIR 18 177 -85 208 333 37 59 chr12 135615298 135615433 -8667056 - L2 LINE L2 -1882 1432 1301 2456 173 134 19 chr12 135616570 135617144 -8665345 + L1MB7 LINE L1 5535 6174 -10 204 338 34 40 chr12 135617537 135617685 -8664804 - MIR SINE MIR -11 251 105 1883 171 0 0 chr12 135617752 135618051 -8664438 - AluJo SINE Alu -12 300 2 294 95 0 0 chr12 135618368 135618410 -8664079 + (CAT)n Simple_repeat Simple_repeat 1 42 0 701 320 39 0 chr12 135618413 135618644 -8663845 - MIR SINE MIR -2 260 21 189 0 0 0 chr12 135619465 135619486 -8663003 + (GGA)n Simple_repeat Simple_repeat 3 23 0 265 362 39 0 chr12 135620447 135620574 -8661915 - MIR SINE MIR -21 241 110 807 292 81 10 chr12 135621753 135622136 -8660353 + L2 LINE L2 2883 3292 -21 275 171 92 66 chr12 135622521 135622597 -8659892 - MIR SINE MIR -77 185 108 240 355 7 7 chr12 135623460 135623601 -8658888 + (CA)n Simple_repeat Simple_repeat 2 142 0 217 316 32 32 chr12 135623630 135623785 -8658704 + (CATG)n Simple_repeat Simple_repeat 3 157 0 * 252 388 0 22 chr12 135623704 135623887 -8658602 + (CA)n Simple_repeat Simple_repeat 1 179 0 265 253 27 0 chr12 135624003 135624078 -8658411 + (CA)n Simple_repeat Simple_repeat 2 78 0 660 297 106 72 chr12 135625792 135626179 -8656310 - L2 LINE L2 -4 3309 2910 338 323 8 30 chr12 135626294 135626427 -8656062 + MIR SINE MIR 28 157 -105 653 300 27 34 chr12 135626505 135626768 -8655721 - MIR SINE MIR -1 261 1 284 122 0 0 chr12 135627123 135627164 -8655325 + MIR SINE MIR 109 149 -59 487 295 83 19 chr12 135627484 135627640 -8654849 + MIR SINE MIR 17 182 -80 370 372 21 0 chr12 135628374 135628519 -8653970 + MIR SINE MIR 48 195 -67 653 284 62 24 chr12 135628605 135628816 -8653673 + MIR SINE MIR 24 242 -20 554 209 7 0 chr12 135628817 135629598 -8652891 + (CAT)n Simple_repeat Simple_repeat 1 786 0 223 341 32 41 chr12 135629598 135629721 -8652768 - MIR SINE MIR -55 207 86 432 300 58 21 chr12 135630174 135630364 -8652125 + MIR SINE MIR 46 242 -20 2543 182 85 60 chr12 135630367 135630464 -8652025 + L1MB5 LINE L1 5418 5511 -663 1952 153 0 0 chr12 135630464 135630765 -8651724 + AluJb SINE Alu 1 301 -11 2543 182 85 60 chr12 135630765 135631405 -8651084 + L1MB5 LINE L1 5511 6174 0 192 264 0 0 chr12 135631789 135631842 -8650647 + L2 LINE L2 3002 3054 -218 241 241 139 0 chr12 135631988 135632067 -8650422 - L2 LINE L2 -4 3309 3220 1833 135 21 3 chr12 135632158 135632447 -8650042 - AluJo SINE Alu -18 294 1 712 193 15 89 chr12 135632447 135632649 -8649840 - MER58A DNA MER1_type -10 214 28 279 303 41 41 chr12 135632667 135632789 -8649700 - L2 LINE L2 -223 3090 2969 311 279 106 0 chr12 135632958 135633062 -8649427 - MIR SINE MIR -119 143 29 * 359 326 75 0 chr12 135633057 135633204 -8649285 - MIR SINE MIR -97 165 8 604 195 144 17 chr12 135633204 135633378 -8649111 - MER3 DNA MER1_type -1 208 13 3340 68 36 22 chr12 135633775 135634219 -8648270 + MLT2A2 LTR ERVL 1 450 -3 946 117 12 29 chr12 135634232 135634403 -8648086 + THE1B LTR MaLR 197 364 0 305 407 74 12 chr12 135634749 135634992 -8647497 + L1ME4a LINE L1 5853 6110 -11 684 218 114 26 chr12 135635155 135635348 -8647141 + MIR SINE MIR 47 256 -6 1133 190 27 14 chr12 135636038 135636259 -8646230 - MER58A DNA MER1_type 0 224 1 203 328 0 0 chr12 135636260 135636318 -8646171 - MIR SINE MIR -47 215 158 300 114 0 5 chr12 135637330 135637385 -8645104 + L1MB5 LINE L1 5742 5794 -384 696 100 10 0 chr12 135637406 135637506 -8644983 + FLAM_C SINE Alu 42 142 -1 1443 214 23 20 chr12 135637506 135637692 -8644797 + L1MB5 LINE L1 5823 6012 -162 2750 97 14 3 chr12 135637692 135638063 -8644426 + THE1C LTR MaLR 1 375 0 1443 214 23 20 chr12 135638063 135638226 -8644263 + L1MB5 LINE L1 6012 6173 -1 559 272 137 35 chr12 135638585 135638898 -8643591 + MLT1K LTR MaLR 189 533 -55 315 199 7 27 chr12 135639279 135639425 -8643064 + (CAGAGA)n Simple_repeat Simple_repeat 1 143 0 237 83 0 0 chr12 135639447 135639483 -8643006 + (CAGAGA)n Simple_repeat Simple_repeat 2 37 0 650 220 6 0 chr12 135639817 135639994 -8642495 + (CA)n Simple_repeat Simple_repeat 1 178 0 519 234 0 0 chr12 135640024 135640169 -8642320 + (CA)n Simple_repeat Simple_repeat 1 145 0 317 247 0 68 chr12 135641377 135641539 -8640950 + G-rich Low_complexity Low_complexity 3 153 0 315 344 0 32 chr12 135641631 135641788 -8640701 + G-rich Low_complexity Low_complexity 3 154 0 1276 268 31 22 chr12 135642082 135642622 -8639867 - L2 LINE L2 -312 3001 2459 290 218 27 38 chr12 135643882 135643986 -8638503 + L2 LINE L2 2895 2997 -275 259 304 196 0 chr12 135644627 135644765 -8637724 + MER5A DNA MER1_type 25 189 0 226 301 80 0 chr12 135644776 135644889 -8637600 - MER117 DNA MER1_type -9 188 67 343 329 174 16 chr12 135645114 135645488 -8637001 + L2 LINE L2 2840 3272 0 412 245 54 75 chr12 135645798 135645937 -8636552 + MLT1C LTR MaLR 59 199 -191 189 107 0 0 chr12 135645937 135645965 -8636524 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 412 245 54 75 chr12 135645965 135646165 -8636324 + MLT1C LTR MaLR 199 390 0 195 326 35 6 chr12 135646273 135646379 -8636110 + MIR SINE MIR 43 150 -63 804 215 47 23 chr12 135647981 135648327 -8634162 + MER31B LTR ERV1 1 466 0 180 0 0 0 chr12 135648426 135648446 -8634043 + (A)n Simple_repeat Simple_repeat 1 20 0 221 164 33 16 chr12 135648929 135648990 -8633499 + MIR SINE MIR 83 144 -118 650 269 45 5 chr12 135649818 135650019 -8632470 - MIR SINE MIR 0 262 54 639 277 221 6 chr12 135650637 135650958 -8631531 + L2 LINE L2 2910 3299 -14 495 0 0 0 chr12 135650961 135651016 -8631473 + (TGGA)n Simple_repeat Simple_repeat 3 57 0 226 258 136 0 chr12 135651484 135651550 -8630939 + MER5C DNA MER1_type 249 323 -1 274 250 130 10 chr12 135651614 135651714 -8630775 + MER58B DNA MER1_type 193 304 -37 618 318 82 5 chr12 135651850 135652070 -8630419 - MIR SINE MIR -24 238 2 354 273 19 0 chr12 135652070 135652186 -8630303 - MIR SINE MIR -87 121 3 528 301 28 0 chr12 135653951 135654094 -8628395 - MIR SINE MIR -24 238 92 235 373 76 6 chr12 135654077 135654235 -8628254 + MIR SINE MIR 80 248 -14 * 184 182 0 0 chr12 135654324 135654357 -8628132 + L2 LINE L2 3263 3295 -18 297 311 9 28 chr12 135654433 135654539 -8627950 + MIR SINE MIR 88 191 -71 195 100 0 0 chr12 135654770 135654800 -8627689 + (CA)n Simple_repeat Simple_repeat 2 31 0 972 254 115 28 chr12 135657287 135657712 -8624777 + MLT1K LTR MaLR 127 588 0 286 267 13 0 chr12 135657886 135657961 -8624528 + MIR SINE MIR 47 122 -86 1081 227 18 10 chr12 135659148 135659639 -8622850 + L1MB7 LINE L1 5570 6098 -86 246 331 176 0 chr12 135660248 135660493 -8621996 - L2 LINE L2 -483 2831 2544 230 300 29 0 chr12 135661055 135661125 -8621364 + L2 LINE L2 3223 3294 -19 273 57 0 0 chr12 135661610 135661645 -8620844 + (CA)n Simple_repeat Simple_repeat 1 35 0 1148 226 38 27 chr12 135661925 135662297 -8620192 - MLT1C LTR MaLR -33 434 59 337 203 162 0 chr12 135662354 135662428 -8620061 + L2 LINE L2 3223 3308 -5 724 292 207 0 chr12 135662794 135663171 -8619318 - L2 LINE L2 -2 3311 2857 239 253 96 0 chr12 135663697 135663780 -8618709 - L2 LINE L2 -2 3311 3221 1260 128 20 4 chr12 135663865 135664328 -8618161 + (TGGA)n Simple_repeat Simple_repeat 1 470 0 2154 224 48 24 chr12 135664961 135665585 -8616904 + L1MB5 LINE L1 5527 6165 -9 327 206 14 14 chr12 135666119 135666192 -8616297 + MIR SINE MIR 53 125 -137 369 233 0 12 chr12 135666713 135666799 -8615690 - MIR3 SINE MIR -46 162 78 189 167 95 0 chr12 135667344 135667386 -8615103 + MIR SINE MIR 76 121 -141 1591 208 13 0 chr12 135667604 135667907 -8614582 + L1MB2 LINE L1 5863 6169 -2 319 303 11 0 chr12 135669803 135669892 -8612597 + MLT1K LTR MaLR 227 316 -272 280 273 136 0 chr12 135669930 135670040 -8612449 + MLT1K LTR MaLR 449 573 -15 703 225 67 0 chr12 135670979 135671157 -8611332 - MIR SINE MIR -63 199 10 348 149 68 27 chr12 135671536 135671610 -8610879 + L2 LINE L2 3195 3271 -1 309 225 14 0 chr12 135671903 135671974 -8610515 + MIR SINE MIR 69 140 -68 988 243 71 51 chr12 135672392 135672457 -8610032 - MLT1C LTR MaLR 0 467 405 1940 118 44 3 chr12 135672457 135672754 -8609735 - AluJb SINE Alu -3 309 1 988 243 71 51 chr12 135672754 135673141 -8609348 - MLT1C LTR MaLR -62 405 6 339 331 116 0 chr12 135674135 135674256 -8608233 + MIR SINE MIR 79 213 -49 227 278 167 0 chr12 135674534 135674606 -8607883 - L2 LINE L2 -13 3259 3176 713 184 54 26 chr12 135674618 135674907 -8607582 + MLT1A1 LTR MaLR 1 328 -37 389 239 80 85 chr12 135675016 135675107 -8607382 - L2 LINE L2 -266 3047 2956 1673 129 107 0 chr12 135675107 135675379 -8607110 + AluSx SINE Alu 1 301 -11 389 239 80 85 chr12 135675379 135675463 -8607026 - L2 LINE L2 -357 2956 2873 1287 122 0 25 chr12 135675739 135675935 -8606554 + AluSg/x SINE Alu 114 304 -8 422 219 24 118 chr12 135675947 135676116 -8606373 - L1MD2 LINE L1 -72 6287 6135 346 254 6 11 chr12 135676133 135676314 -8606175 + (TG)n Simple_repeat Simple_repeat 1 180 0 360 256 51 32 chr12 135676318 135676474 -8606015 - L1MD2 LINE L1 -196 6163 6005 344 280 32 0 chr12 135677188 135677281 -8605208 - MIR SINE MIR -129 133 38 633 242 33 0 chr12 135677433 135677586 -8604903 - MIR SINE MIR -65 197 40 478 261 22 29 chr12 135677615 135677753 -8604736 - MIR SINE MIR -79 183 47 546 16 0 0 chr12 135679627 135679690 -8602799 + (CA)n Simple_repeat Simple_repeat 2 64 0 266 322 102 8 chr12 135679701 135679819 -8602670 + MIR3 SINE MIR 28 156 -52 370 369 37 0 chr12 135679950 135680164 -8602325 - L2 LINE L2 -274 3039 2818 456 265 55 30 chr12 135680303 135680503 -8601986 - MIR SINE MIR -21 241 37 227 226 0 81 chr12 135680752 135680814 -8601675 - MIR SINE MIR -98 164 108 1444 214 68 3 chr12 135681961 135682331 -8600158 + L1MB5 LINE L1 5779 6172 -2 1573 166 8 4 chr12 135682336 135682601 -8599888 + AluSx SINE Alu 44 309 -3 299 273 130 0 chr12 135682703 135682780 -8599709 - L2 LINE L2 -2 3270 3184 702 256 278 15 chr12 135682837 135683236 -8599253 - MLT1D LTR MaLR 0 505 2 1108 109 159 25 chr12 135684103 135684304 -8598185 + MER30 DNA MER1_type 3 230 0 593 311 11 0 chr12 135684304 135684484 -8598005 - MIR SINE MIR -80 182 1 242 219 14 41 chr12 135684753 135684826 -8597663 + Charlie8 DNA MER1_type 92 162 -2255 405 251 121 30 chr12 135685064 135685263 -8597226 + MLT1K LTR MaLR 368 584 -4 257 339 42 8 chr12 135685426 135685544 -8596945 + L2 LINE L2 3142 3263 -9 375 358 89 12 chr12 135685752 135686076 -8596413 + L2 LINE L2 2905 3253 -60 677 286 35 25 chr12 135686315 135686514 -8595975 + MIR SINE MIR 16 216 -46 370 304 27 0 chr12 135687374 135687486 -8595003 + MIR SINE MIR 52 166 -96 618 216 87 60 chr12 135687816 135687972 -8594517 + MIR SINE MIR 20 183 -79 2237 97 0 16 chr12 135687972 135688281 -8594208 - AluSx SINE Alu -8 304 1 618 216 87 60 chr12 135688281 135688309 -8594180 + MIR SINE MIR 183 209 -53 318 200 0 15 chr12 135689393 135689458 -8593031 + MIR SINE MIR 97 160 -102 2379 73 3 0 chr12 135689458 135689761 -8592728 + AluSp SINE Alu 3 306 -7 1960 105 3 27 chr12 135689768 135690062 -8592427 + AluSx SINE Alu 26 312 0 2285 209 67 35 chr12 135690341 135691026 -8591463 + L1ME1 LINE L1 5457 6163 -3 332 333 46 88 chr12 135691166 135691406 -8591083 + MIR SINE MIR 24 253 -9 262 266 0 16 chr12 135692039 135692103 -8590386 + GA-rich Low_complexity Low_complexity 2 64 0 521 240 189 23 chr12 135692555 135692731 -8589758 + MIR SINE MIR 21 218 -11 278 219 12 27 chr12 135693414 135693679 -8588810 + C-rich Low_complexity Low_complexity 1 260 0 945 288 50 35 chr12 135693911 135694314 -8588175 + L2 LINE L2 2905 3313 0 1132 232 42 62 chr12 135694318 135694460 -8588029 - MER7A DNA MER2_type -2693 345 202 1419 101 106 0 chr12 135694460 135694668 -8587821 - MER30 DNA MER1_type 0 230 1 1132 232 42 62 chr12 135694668 135694797 -8587692 - MER7A DNA MER2_type -2836 202 82 2216 92 3 0 chr12 135694797 135695090 -8587399 + AluSx SINE Alu 3 296 -16 1132 232 42 62 chr12 135695090 135695171 -8587318 - MER7A DNA MER2_type -2956 82 1 389 261 101 37 chr12 135695337 135695506 -8586983 + MIR SINE MIR 33 210 -52 409 288 90 34 chr12 135695541 135695718 -8586771 - MIR SINE MIR -35 227 41 489 301 48 0 chr12 135696363 135696509 -8585980 - MIR SINE MIR -79 183 31 1776 142 55 3 chr12 135696711 135697000 -8585489 - AluJb SINE Alu -8 304 1 2073 250 61 6 chr12 135697053 135697709 -8584780 + L1ME3A LINE L1 5254 5945 -221 635 293 1 32 chr12 135698043 135698233 -8584256 + MIR SINE MIR 7 190 -65 229 309 95 8 chr12 135699488 135699614 -8582875 - MIR SINE MIR -79 183 47 412 329 42 0 chr12 135700847 135701084 -8581405 - L2 LINE L2 -208 3064 2818 189 228 16 8 chr12 135701093 135701220 -8581269 + G-rich Low_complexity Low_complexity 5 132 0 325 202 27 21 chr12 135701275 135701866 -8580623 + G-rich Low_complexity Low_complexity 1 594 0 252 176 15 30 chr12 135701898 135702029 -8580460 + G-rich Low_complexity Low_complexity 6 134 0 213 217 9 19 chr12 135702061 135702167 -8580322 + G-rich Low_complexity Low_complexity 6 110 0 362 204 38 6 chr12 135702226 135702578 -8579911 + G-rich Low_complexity Low_complexity 1 363 0 2017 123 0 13 chr12 135702931 135703231 -8579258 + AluSx SINE Alu 1 296 -16 654 249 35 25 chr12 135703232 135703429 -8579060 + L1ME3A LINE L1 5964 6162 -8 274 274 68 26 chr12 135703781 135703898 -8578591 - MER117 DNA MER1_type -8 189 68 1968 157 0 0 chr12 135703938 135704238 -8578251 - AluJo SINE Alu -11 301 2 932 307 94 12 chr12 135704791 135705289 -8577200 + MLT1K LTR MaLR 13 588 0 533 345 62 25 chr12 135705504 135705779 -8576710 - L3 LINE CR1 -1170 407 123 1682 166 3 26 chr12 135706040 135706348 -8576141 - AluJo SINE Alu -11 301 1 261 232 0 0 chr12 135706525 135706594 -8575895 + (TATG)n Simple_repeat Simple_repeat 3 71 0 3527 166 43 31 chr12 135706615 135706698 -8575791 - L1MB5 LINE L1 -10 6164 6083 1971 127 7 3 chr12 135706698 135706989 -8575500 - AluSx SINE Alu -20 292 1 3527 166 43 31 chr12 135706989 135707677 -8574812 - L1MB5 LINE L1 -91 6083 5384 392 335 38 0 chr12 135707667 135707903 -8574586 - L1MC4a LINE L1 -1877 5931 5687 * 912 75 27 7 chr12 135708063 135708209 -8574280 + (TTTC)n Simple_repeat Simple_repeat 2 150 0 1239 112 6 0 chr12 135708213 135708383 -8574106 - AluSx SINE Alu -32 278 108 708 90 20 0 chr12 135708449 135708549 -8573940 - AluSx SINE Alu -210 102 1 569 194 19 9 chr12 135708805 135708913 -8573576 + MER81 DNA DNA 3 111 -3 466 258 172 15 chr12 135710210 135710477 -8572012 + LTR16A1 LTR ERVL 142 450 -7 288 77 0 0 chr12 135710772 135710811 -8571678 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1488 176 48 11 chr12 135710811 135711084 -8571405 - AluJo SINE Alu -29 283 1 653 241 78 0 chr12 135711587 135711801 -8570688 - MIR SINE MIR -12 250 21 348 247 47 0 chr12 135711929 135712014 -8570475 + MIR SINE MIR 74 162 -100 732 164 136 14 chr12 135712112 135712252 -8570237 + AluJo SINE Alu 39 195 -117 195 42 0 0 chr12 135712260 135712284 -8570205 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 590 324 14 31 chr12 135712666 135712953 -8569536 - L1ME2 LINE L1 -206 5958 5677 1233 271 92 84 chr12 135712968 135713085 -8569404 - MER20B DNA MER1_type -11 772 657 248 70 23 0 chr12 135713085 135713128 -8569361 + (CA)n Simple_repeat Simple_repeat 2 45 0 1233 271 92 84 chr12 135713128 135713232 -8569257 - MER20B DNA MER1_type -126 657 555 1495 166 4 8 chr12 135713232 135713491 -8568998 + AluJb SINE Alu 29 286 -26 1233 271 92 84 chr12 135713491 135714009 -8568480 - MER20B DNA MER1_type -228 555 26 1462 130 22 86 chr12 135714369 135714723 -8567766 - L1P4 LINE L1 -727 5438 5120 2198 121 0 0 chr12 135714723 135715028 -8567461 + AluSx SINE Alu 1 305 -7 1462 130 22 86 chr12 135715028 135715126 -8567363 - L1P4 LINE L1 -1045 5120 5017 5030 102 10 7 chr12 135715128 135715832 -8566657 + L1PA15 LINE L1 5460 6165 0 2036 259 24 82 chr12 135715838 135716640 -8565849 - L1ME2 LINE L1 -15 6149 5395 512 259 76 0 chr12 135716912 135717070 -8565419 + MIR SINE MIR 10 179 -83 207 0 0 0 chr12 135717281 135717304 -8565185 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1690 159 4 0 chr12 135717317 135717594 -8564895 - AluJb SINE Alu -32 280 3 862 202 23 0 chr12 135717638 135717811 -8564678 - MER5A DNA MER1_type -12 177 1 272 295 79 29 chr12 135717843 135717982 -8564507 + MER5A DNA MER1_type 38 183 -6 2414 82 0 0 chr12 135718049 135718354 -8564135 - AluSc SINE Alu -4 305 1 2182 103 0 19 chr12 135718803 135719114 -8563375 - AluSx SINE Alu -7 305 1 1221 208 23 23 chr12 135719123 135719426 -8563063 - AluJo SINE Alu -9 303 1 437 358 147 13 chr12 135719619 135720007 -8562482 - L2 LINE L2 -62 3251 2812 556 245 26 1 chr12 135720455 135720597 -8561892 + MER45A DNA AcHobo 34 178 0 204 273 45 0 chr12 135721345 135721411 -8561078 - L2 LINE L2 0 3272 3204 202 288 25 38 chr12 135721412 135721492 -8560997 + L2 LINE L2 3235 3313 0 548 224 33 26 chr12 135721518 135721670 -8560819 - MIR SINE MIR -11 251 99 779 252 89 77 chr12 135722063 135722576 -8559913 + MLT1H LTR MaLR 20 592 -3 1774 228 63 9 chr12 135723086 135723529 -8558960 + MLT1C LTR MaLR 1 467 0 2032 115 3 0 chr12 135723623 135723911 -8558578 + AluSx SINE Alu 1 289 -23 666 281 123 21 chr12 135723918 135724457 -8558032 + L2 LINE L2 2531 3115 -198 1062 203 89 124 chr12 135724862 135725013 -8557476 - L1MC3 LINE L1 0 7785 7630 1646 167 3 3 chr12 135725013 135725295 -8557194 - AluJb SINE Alu -30 282 1 1062 203 89 124 chr12 135725295 135725602 -8556887 - L1MC3 LINE L1 -155 7630 7343 373 258 10 0 chr12 135726129 135726226 -8556263 + MIR SINE MIR 90 187 -75 303 236 186 12 chr12 135726325 135726486 -8556003 + L2 LINE L2 2804 2992 -321 200 260 0 0 chr12 135727212 135727262 -8555227 - MER91 DNA MER1_type 0 140 91 517 241 45 0 chr12 135727573 135727706 -8554783 + MIR SINE MIR 27 165 -97 278 323 7 0 chr12 135728803 135728958 -8553531 + (CA)n Simple_repeat Simple_repeat 1 156 0 204 294 0 18 chr12 135729010 135729119 -8553370 + (CA)n Simple_repeat Simple_repeat 2 108 0 259 291 190 0 chr12 135729155 135729234 -8553255 + MER53 DNA DNA 1 94 -95 227 233 0 0 chr12 135729204 135729247 -8553242 - MER53 DNA DNA -54 135 93 * 266 363 111 7 chr12 135729750 135729885 -8552604 - MER5B DNA MER1_type -29 149 1 560 288 14 0 chr12 135729912 135730058 -8552431 - MER117 DNA MER1_type 0 197 50 632 310 2 25 chr12 135730203 135730440 -8552049 - MIR SINE MIR -2 260 30 765 138 0 0 chr12 135730627 135730736 -8551753 + AluJo SINE Alu 2 110 -202 757 164 19 69 chr12 135730838 135730997 -8551492 + AluJo SINE Alu 119 269 -43 1385 266 94 35 chr12 135731100 135731397 -8551092 - MLT1E LTR MaLR -17 576 298 222 37 0 0 chr12 135731397 135731424 -8551065 + (GA)n Simple_repeat Simple_repeat 1 27 0 1385 266 94 35 chr12 135731424 135731667 -8550822 - MLT1E LTR MaLR -295 298 4 2427 195 22 30 chr12 135731729 135732167 -8550322 - L1MB3 LINE L1 0 6183 5743 3891 80 34 48 chr12 135732167 135732291 -8550198 - MER41A LTR ERV1 0 554 430 2534 51 0 3 chr12 135732291 135732602 -8549887 + AluY SINE Alu 1 310 -1 3891 80 34 48 chr12 135732602 135732682 -8549807 - MER41A LTR ERV1 -124 430 350 2130 113 6 3 chr12 135732682 135732993 -8549496 - AluSq SINE Alu -1 312 1 3891 80 34 48 chr12 135732993 135733349 -8549140 - MER41A LTR ERV1 -204 350 1 2427 195 22 30 chr12 135733349 135733448 -8549041 - L1MB3 LINE L1 -440 5743 5650 397 311 131 36 chr12 135733648 135734179 -8548310 + L2 LINE L2 2685 3272 0 249 281 22 72 chr12 135734841 135734980 -8547509 - MIR SINE MIR -118 144 13 * 536 262 7 7 chr12 135734920 135735061 -8547428 + MIR SINE MIR 16 156 -106 2650 216 17 47 chr12 135735075 135735657 -8546832 - L1MB7 LINE L1 -47 6137 5574 1987 106 41 7 chr12 135735657 135736129 -8546360 + AluSx SINE Alu 1 482 0 2650 216 17 47 chr12 135736129 135736206 -8546283 - L1MB7 LINE L1 -610 5574 5496 2718 151 12 31 chr12 135736294 135736778 -8545711 + L1MB3 LINE L1 5708 6182 -1 546 221 161 99 chr12 135736882 135737266 -8545223 + MLT1L LTR MaLR 197 604 -11 1570 201 7 10 chr12 135737328 135737627 -8544862 - AluJo SINE Alu -14 298 1 472 324 78 15 chr12 135737636 135737840 -8544649 + MIR SINE MIR 29 245 -17 293 244 24 0 chr12 135739037 135739119 -8543370 + L2 LINE L2 2860 2943 -371 288 240 175 13 chr12 135739262 135739416 -8543073 + L2 LINE L2 2921 3099 -214 1162 238 196 23 chr12 135740148 135740669 -8541820 + MLT1G LTR MaLR 1 574 -16 951 266 86 4 chr12 135741189 135741445 -8541044 - MLT1I LTR MaLR -7 402 126 429 190 0 0 chr12 135741678 135741757 -8540732 + MLT1D LTR MaLR 1 79 -426 1657 173 35 91 chr12 135741767 135742005 -8540484 - MLT1B LTR MaLR -10 380 171 1635 177 14 10 chr12 135742005 135742299 -8540190 + AluJo SINE Alu 1 295 -17 1657 173 35 91 chr12 135742299 135742458 -8540031 - MLT1B LTR MaLR -219 171 5 1578 208 88 30 chr12 135742455 135742855 -8539634 + MLT1D LTR MaLR 75 497 -8 * 302 284 178 68 chr12 135743505 135743573 -8538916 - L1ME2 LINE L1 -2 6162 6103 1544 180 0 40 chr12 135743573 135743873 -8538616 - AluJo SINE Alu -24 288 1 302 284 178 68 chr12 135743873 135744068 -8538421 - L1ME2 LINE L1 -61 6103 5870 423 190 33 66 chr12 135744068 135744189 -8538300 + MER58B DNA MER1_type 1 117 -224 3695 166 7 98 chr12 135744190 135744444 -8538045 - L1MC2 LINE L1 -25 6319 6044 2304 100 0 0 chr12 135744444 135744753 -8537736 + AluSg SINE Alu 1 309 -1 3695 166 7 98 chr12 135744753 135745124 -8537365 - L1MC2 LINE L1 -300 6044 5794 1941 133 3 0 chr12 135745124 135745409 -8537080 - AluSx SINE Alu -21 291 6 3695 166 7 98 chr12 135745409 135745663 -8536826 - L1MC2 LINE L1 -550 5794 5519 909 193 36 40 chr12 135745667 135745759 -8536730 + MER58B DNA MER1_type 81 172 -2248 1781 158 23 3 chr12 135745759 135746063 -8536426 - AluJo SINE Alu -2 310 1 909 193 36 40 chr12 135746063 135746193 -8536296 + MER58B DNA MER1_type 172 302 -39 2201 101 0 16 chr12 135746203 135746511 -8535978 - AluSx SINE Alu -5 307 5 1148 236 32 0 chr12 135746557 135746807 -8535682 - L1ME2 LINE L1 -293 5873 5616 652 295 40 17 chr12 135747199 135747539 -8534950 + MLT1J2 LTR MaLR 4 353 -56 2927 72 0 0 chr12 135747651 135748038 -8534451 + MER41A LTR ERV1 1 387 -167 2341 87 0 0 chr12 135748038 135748349 -8534140 + AluY SINE Alu 1 311 0 242 298 24 12 chr12 135748358 135748442 -8534047 - Charlie8 DNA MER1_type -2331 86 2 312 267 163 0 chr12 135748446 135748532 -8533957 - L2 LINE L2 0 3313 3214 277 315 174 5 chr12 135749113 135749297 -8533192 + MIR SINE MIR 34 248 -14 258 310 0 19 chr12 135749784 135749942 -8532547 + (CA)n Simple_repeat Simple_repeat 1 155 0 329 167 0 111 chr12 135750349 135750402 -8532087 - MLT1L LTR MaLR -10 605 564 934 225 66 14 chr12 135750402 135750615 -8531874 + MER58A DNA MER1_type 1 224 0 329 167 0 111 chr12 135750615 135750651 -8531838 - MLT1L LTR MaLR -51 564 526 802 268 79 63 chr12 135750680 135751053 -8531436 - MLT1H1 LTR MaLR -7 548 164 2149 100 3 13 chr12 135751053 135751352 -8531137 - AluSx SINE Alu -16 296 1 802 268 79 63 chr12 135751352 135751470 -8531019 - MLT1H1 LTR MaLR -391 164 49 1133 250 131 78 chr12 135751651 135751674 -8530815 - L1ME3A LINE L1 -8 6162 6142 2138 112 0 10 chr12 135751674 135751978 -8530511 + AluSx SINE Alu 1 301 -11 1133 250 131 78 chr12 135751978 135752527 -8529962 - L1ME3A LINE L1 -28 6142 5560 259 287 51 56 chr12 135752774 135752886 -8529603 - L1ME4a LINE L1 -4 6117 6005 5349 82 12 4 chr12 135752886 135753572 -8528917 - LTR8 LTR ERV1 0 691 1 259 287 51 56 chr12 135753572 135753654 -8528835 - L1ME4a LINE L1 -116 6005 5924 1857 143 14 0 chr12 135753762 135754049 -8528440 - AluSx SINE Alu -21 291 1 512 163 0 0 chr12 135754050 135754136 -8528353 - MIR SINE MIR -98 164 79 1731 168 45 15 chr12 135754881 135755215 -8527274 + MLT1A1 LTR MaLR 1 344 -21 417 323 64 11 chr12 135755281 135755622 -8526867 - L2 LINE L2 -303 3010 2642 428 226 123 0 chr12 135756242 135756348 -8526141 - MER117 DNA MER1_type 0 197 79 240 279 0 0 chr12 135756410 135756471 -8526018 - MIR3 SINE MIR -49 159 99 231 372 54 7 chr12 135756625 135756773 -8525716 + L3b LINE CR1 1312 1466 -117 239 304 22 11 chr12 135756954 135757046 -8525443 - LTR67 LTR ERVL -6 551 459 1214 206 32 20 chr12 135757576 135757953 -8524536 - MLT1F1 LTR MaLR 0 390 254 417 213 0 0 chr12 135758001 135758081 -8524408 + L1MB3 LINE L1 6088 6167 -16 378 0 0 0 chr12 135758081 135758123 -8524366 + (CA)n Simple_repeat Simple_repeat 1 42 0 242 300 25 0 chr12 135758130 135758210 -8524279 + MIR SINE MIR 40 121 -87 543 193 138 7 chr12 135758212 135758357 -8524132 - LTR33 LTR ERVL -340 181 18 196 299 234 0 chr12 135758758 135758865 -8523624 - L2 LINE L2 -4 3268 3137 22 0 0 0 chr12 135758896 135758918 -8523571 + AT_rich Low_complexity Low_complexity 1 22 0 1603 166 10 26 chr12 135758930 135759232 -8523257 + AluJb SINE Alu 8 304 -8 556 217 0 68 chr12 135759330 135759491 -8522998 + MLT1A1 LTR MaLR 1 150 -215 1130 131 0 6 chr12 135759499 135759674 -8522815 + AluSq SINE Alu 137 310 -3 964 193 37 28 chr12 135759680 135759898 -8522591 + MLT1A1 LTR MaLR 145 364 -1 522 248 16 0 chr12 135759899 135760020 -8522469 - MIR SINE MIR -118 144 22 775 266 103 63 chr12 135760102 135760482 -8522007 + L1ME1 LINE L1 5463 5857 -309 362 185 0 15 chr12 135760487 135760554 -8521935 + AluS SINE Alu 6 57 -246 1798 156 0 0 chr12 135760554 135760836 -8521653 + AluJo SINE Alu 31 312 0 362 185 0 15 chr12 135760836 135760848 -8521641 + AluS SINE Alu 57 68 -235 2187 94 14 10 chr12 135761030 135761327 -8521162 - AluSx SINE Alu -14 298 1 2206 124 0 0 chr12 135761678 135761984 -8520505 - AluSx SINE Alu -4 308 3 312 338 22 29 chr12 135761990 135762126 -8520363 - L2 LINE L2 -16 3256 3122 702 274 29 6 chr12 135762288 135762463 -8520026 - MIR SINE MIR -56 206 28 1068 245 76 60 chr12 135762536 135762904 -8519585 + MLT1A2 LTR MaLR 1 374 0 187 269 0 0 chr12 135763746 135763798 -8518691 + MIR SINE MIR 16 67 -195 1072 263 61 34 chr12 135763867 135764109 -8518380 + LTR33 LTR ERVL 34 268 -253 1914 139 0 7 chr12 135764109 135764411 -8518078 - AluJo SINE Alu -12 300 1 1072 263 61 34 chr12 135764411 135764432 -8518057 + LTR33 LTR ERVL 268 287 -234 2061 208 73 27 chr12 135764432 135764914 -8517575 - MLT1D LTR MaLR 0 505 2 1072 263 61 34 chr12 135764914 135765124 -8517365 + LTR33 LTR ERVL 287 521 0 190 264 0 83 chr12 135765151 135765223 -8517266 + MIR SINE MIR 178 243 -19 292 255 81 40 chr12 135765351 135765500 -8516989 - L2 LINE L2 0 3313 3159 273 324 34 47 chr12 135765528 135765676 -8516813 - L2 LINE L2 -14 3299 3154 3320 181 16 33 chr12 135765756 135766368 -8516121 + MER77 LTR ERV1 4 605 0 834 169 0 0 chr12 135766393 135766523 -8515966 - AluJb SINE Alu -25 287 158 1852 125 7 0 chr12 135766869 135767141 -8515348 + AluSp SINE Alu 11 284 -29 181 151 38 0 chr12 135769425 135769478 -8513011 + (TA)n Simple_repeat Simple_repeat 1 55 0 2033 108 0 3 chr12 135769478 135769764 -8512725 - AluSg SINE Alu -25 285 1 852 171 0 0 chr12 135769799 135769939 -8512550 + FRAM SINE Alu 25 164 -12 1742 113 4 0 chr12 135770038 135770285 -8512204 - AluSx SINE Alu -10 302 55 200 108 0 27 chr12 135771623 135771660 -8510829 + (CAG)n Simple_repeat Simple_repeat 3 38 0 1362 226 152 22 chr12 135772402 135772849 -8509640 - MLT1D LTR MaLR 0 505 1 348 188 38 0 chr12 135773541 135773621 -8508868 - MIR SINE MIR -131 131 49 354 301 10 10 chr12 135774165 135774268 -8508221 - MER81 DNA DNA -2 112 10 363 269 46 9 chr12 135774406 135774514 -8507975 + MIR SINE MIR 81 192 -70 246 219 51 131 chr12 135774638 135774775 -8507714 - MIR SINE MIR -20 242 117 187 97 65 0 chr12 135775014 135775045 -8507444 + MIR SINE MIR 117 149 -113 1619 213 26 24 chr12 135775506 135775923 -8506566 + Charlie1 DNA MER1_type 2343 2760 -1 2268 82 7 13 chr12 135775972 135776277 -8506212 + AluSx SINE Alu 1 303 -9 183 272 37 37 chr12 135776278 135776359 -8506130 - L2 LINE L2 -12 3260 3180 * 249 256 60 8 chr12 135776327 135776444 -8506045 - MIR SINE MIR -32 230 108 330 275 27 69 chr12 135776666 135776981 -8505508 + L2 LINE L2 2859 3214 -99 410 216 21 0 chr12 135777120 135777217 -8505272 - Charlie8 DNA MER1_type -2235 182 84 212 262 8 103 chr12 135777265 135777391 -8505098 - L2 LINE L2 -203 3069 2956 2105 117 0 0 chr12 135778321 135778620 -8503869 - AluSc SINE Alu -10 299 1 267 197 15 30 chr12 135778719 135778785 -8503704 - MIR SINE MIR -62 146 82 * 376 296 184 52 chr12 135778777 135779142 -8503347 - L2 LINE L2 -2 3311 2899 1229 192 75 29 chr12 135779255 135779432 -8503057 - LTR54B LTR ERV1 -176 322 124 1753 156 36 7 chr12 135779432 135779606 -8502883 - AluJo SINE Alu -2 310 122 450 0 0 0 chr12 135779606 135779656 -8502833 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1753 156 36 7 chr12 135779656 135779782 -8502707 - AluJo SINE Alu -190 122 1 1229 192 75 29 chr12 135779782 135779912 -8502577 - LTR54B LTR ERV1 -374 124 1 228 276 49 55 chr12 135779912 135780075 -8502414 - L2 LINE L2 -183 3130 2969 256 128 0 0 chr12 135780081 135780120 -8502369 + L1MB3 LINE L1 5919 5957 -226 1075 146 0 0 chr12 135780121 135780292 -8502197 - L1MB3 LINE L1 -220 5963 5793 1169 284 56 38 chr12 135780299 135780726 -8501763 - L2 LINE L2 -337 2977 2538 2745 174 59 0 chr12 135780726 135781215 -8501274 - L1MB3 LINE L1 0 6183 5666 1169 284 56 38 chr12 135781215 135781291 -8501198 - L2 LINE L2 -776 2538 2465 305 348 72 5 chr12 135781806 135782027 -8500462 + L2 LINE L2 2870 3105 -167 816 262 68 0 chr12 135782069 135782306 -8500183 + MIR SINE MIR 1 253 -9 401 289 74 0 chr12 135784016 135784137 -8498352 - MIR SINE MIR -1 261 132 482 235 43 9 chr12 135784139 135784254 -8498235 - LTR16C LTR ERVL -180 311 193 1922 231 29 14 chr12 135784444 135784930 -8497559 - L1M4 LINE L1 -1771 4375 3883 292 282 0 29 chr12 135784932 135785035 -8497454 + MLT1L LTR MaLR 514 613 -2 2502 171 42 13 chr12 135785123 135785573 -8496916 - MLT1C LTR MaLR -4 463 1 515 244 67 0 chr12 135786386 135786521 -8495968 + L1ME3 LINE L1 5729 5872 -290 1420 190 0 19 chr12 135787542 135787810 -8494679 - AluJo SINE Alu -22 290 28 544 219 19 52 chr12 135787825 135787980 -8494509 - MLT1K LTR MaLR -32 556 407 804 300 13 0 chr12 135788066 135788299 -8494190 - MLT1K LTR MaLR -307 281 46 252 313 104 6 chr12 135788320 135788483 -8494006 + MIR SINE MIR 69 247 -15 1175 224 208 36 chr12 135788541 135789046 -8493443 + MLT1G1 LTR MaLR 2 593 -2 606 305 62 44 chr12 135789798 135790182 -8492307 + MER113 DNA MER1_type? 67 457 -64 551 238 226 0 chr12 135790264 135790428 -8492061 - MIR SINE MIR -47 215 15 967 220 143 13 chr12 135790502 135790817 -8491672 + MLT1C LTR MaLR 6 361 -106 261 288 0 6 chr12 135790812 135790900 -8491589 + MLT1D LTR MaLR 440 503 -2 * 193 191 0 0 chr12 135791084 135791126 -8491363 + MIR SINE MIR 80 121 -141 1449 211 74 59 chr12 135791155 135791576 -8490913 - MSTA LTR MaLR -1 427 1 540 167 83 42 chr12 135791810 135791897 -8490592 + MER3 DNA MER1_type 80 175 -34 2507 160 93 2 chr12 135791897 135792359 -8490130 - MLT1D LTR MaLR 0 505 2 540 167 83 42 chr12 135792359 135792391 -8490098 + MER3 DNA MER1_type 175 204 -5 295 235 206 0 chr12 135792401 135792503 -8489986 + L2 LINE L2 3149 3271 -1 335 280 0 20 chr12 135792610 135792710 -8489779 + MIR SINE MIR 48 145 -63 296 267 58 33 chr12 135792952 135793072 -8489417 + L2 LINE L2 2942 3064 -208 539 179 38 9 chr12 135793144 135793250 -8489239 - MIR SINE MIR -148 114 6 445 288 0 22 chr12 135793264 135793448 -8489041 + (CA)n Simple_repeat Simple_repeat 1 180 0 549 317 0 0 chr12 135793494 135793674 -8488815 + (CA)n Simple_repeat Simple_repeat 1 180 0 427 321 0 0 chr12 135793718 135794006 -8488483 + (CA)n Simple_repeat Simple_repeat 1 288 0 403 356 0 0 chr12 135794045 135794222 -8488267 + (CA)n Simple_repeat Simple_repeat 2 178 0 517 324 0 0 chr12 135794299 135794478 -8488011 + (CA)n Simple_repeat Simple_repeat 2 180 0 425 358 0 0 chr12 135794519 135794692 -8487797 + (CA)n Simple_repeat Simple_repeat 2 174 0 322 341 12 6 chr12 135794717 135794890 -8487599 + (CA)n Simple_repeat Simple_repeat 2 175 0 291 319 7 21 chr12 135794856 135794997 -8487492 + (CATATA)n Simple_repeat Simple_repeat 6 144 0 * 197 250 0 14 chr12 135795010 135795082 -8487407 + (CA)n Simple_repeat Simple_repeat 1 71 0 1801 160 14 0 chr12 135795091 135795378 -8487111 - AluJo SINE Alu -21 291 1 267 93 0 0 chr12 135796411 135796454 -8486035 + (CAGG)n Simple_repeat Simple_repeat 3 45 0 318 160 213 0 chr12 135796591 135796666 -8485823 - L2 LINE L2 0 3313 3223 239 267 0 67 chr12 135796666 135796756 -8485733 - L2 LINE L2 -20 3293 3210 377 225 0 0 chr12 135796791 135796862 -8485627 - L2 LINE L2 -13 3300 3230 242 295 0 0 chr12 135796863 135796924 -8485565 - L2 LINE L2 -18 3295 3235 296 189 0 81 chr12 135796925 135796999 -8485490 - L2 LINE L2 -11 3302 3235 590 304 70 66 chr12 135796999 135797456 -8485033 - L2 LINE L2 -19 3294 2836 181 215 0 31 chr12 135798213 135798278 -8484211 + GA-rich Low_complexity Low_complexity 3 65 0 287 270 45 22 chr12 135798434 135798523 -8483966 - MIR SINE MIR -63 145 55 594 222 0 0 chr12 135798525 135798687 -8483802 + (TG)n Simple_repeat Simple_repeat 1 162 0 573 247 0 0 chr12 135798701 135798999 -8483490 + (TG)n Simple_repeat Simple_repeat 1 298 0 268 308 69 8 chr12 135799728 135799858 -8482631 + MIR SINE MIR 90 227 -35 1544 143 8 0 chr12 135799972 135800216 -8482273 - AluJo SINE Alu -30 282 37 444 236 47 0 chr12 135800218 135800344 -8482145 - MIR SINE MIR -64 144 21 319 356 0 0 chr12 135800930 135801031 -8481458 - MIR SINE MIR -71 137 37 507 246 33 0 chr12 135801086 135801208 -8481281 + MIR SINE MIR 76 201 -61 249 280 0 13 chr12 135801299 135801374 -8481115 - LTR16A1 LTR ERVL -101 356 283 538 303 95 11 chr12 135801923 135802187 -8480302 - MLT1L LTR MaLR 0 615 330 1772 130 3 11 chr12 135802219 135802552 -8479937 - AluSx SINE Alu 0 331 1 1034 158 11 16 chr12 135802579 135802762 -8479727 + AluJo SINE Alu 1 182 -130 281 303 97 55 chr12 135802791 135802912 -8479577 - MLT1L LTR MaLR -333 282 153 770 234 75 42 chr12 135802912 135802991 -8479498 + MER58A DNA MER1_type 4 79 -2341 1602 154 4 4 chr12 135802991 135803263 -8479226 - AluJo SINE Alu -7 305 34 770 234 75 42 chr12 135803263 135803397 -8479092 + MER58A DNA MER1_type 79 224 0 281 303 97 55 chr12 135803397 135803420 -8479069 - MLT1L LTR MaLR -462 153 132 322 226 140 0 chr12 135803537 135803630 -8478859 + MER5A DNA MER1_type 4 109 -80 1252 251 133 10 chr12 135803683 135804089 -8478400 - MLT1C LTR MaLR -10 457 2 415 261 150 22 chr12 135804690 135804980 -8477509 + L2 LINE L2 2772 3076 -237 273 345 11 0 chr12 135805025 135805112 -8477377 + L2 LINE L2 3221 3308 -5 357 230 0 0 chr12 135805751 135805825 -8476664 - MIR SINE MIR -81 181 108 2129 110 14 0 chr12 135806067 135806359 -8476130 - AluSx SINE Alu -16 296 1 807 278 11 0 chr12 135807793 135807984 -8474505 - MIR SINE MIR -1 261 69 315 234 138 0 chr12 135808419 135808513 -8473976 + MLT1L LTR MaLR 120 226 -389 736 193 37 27 chr12 135808581 135808768 -8473721 - MLT1F1 LTR MaLR 0 567 379 529 290 6 97 chr12 135808868 135809199 -8473290 + L2 LINE L2 3013 3313 0 285 51 0 0 chr12 135809301 135809340 -8473149 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 192 27 14 chr12 135809341 135809414 -8473075 + CT-rich Low_complexity Low_complexity 1 74 0 424 279 66 15 chr12 135809610 135809746 -8472743 + MIR3 SINE MIR 15 157 -51 703 299 10 5 chr12 135810493 135810700 -8471789 - MIR SINE MIR -37 225 18 2258 97 3 10 chr12 135811107 135811418 -8471071 + AluSx SINE Alu 1 309 -3 606 235 56 48 chr12 135811419 135811757 -8470732 - MLT1K LTR MaLR -72 516 69 390 316 66 7 chr12 135812069 135812205 -8470284 + MIR SINE MIR 116 259 -3 345 242 108 17 chr12 135812343 135812463 -8470026 + MIR SINE MIR 31 161 -101 336 216 14 0 chr12 135812610 135812684 -8469805 + MIR SINE MIR 59 133 -75 207 288 62 0 chr12 135812758 135812838 -8469651 + L2 LINE L2 2977 3061 -211 860 265 56 75 chr12 135813291 135813794 -8468695 - MLT1J LTR MaLR 0 511 17 814 254 22 0 chr12 135813852 135814037 -8468452 - MER5A DNA MER1_type 0 189 1 326 282 210 17 chr12 135814116 135814297 -8468192 - LTR33 LTR ERVL -2 519 304 225 65 0 0 chr12 135814600 135814631 -8467858 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 248 226 19 0 chr12 135814634 135814687 -8467802 - L2 LINE L2 -26 3246 3193 1579 191 0 3 chr12 135815494 135815776 -8466713 + AluJo SINE Alu 16 296 -16 1941 135 10 10 chr12 135815778 135816089 -8466400 + AluSq SINE Alu 1 311 -2 403 198 189 0 chr12 135816434 135816545 -8465944 - L1MB4 LINE L1 -1 6179 6040 404 302 36 14 chr12 135816547 135816686 -8465803 + MIR SINE MIR 81 222 -40 870 226 247 15 chr12 135816724 135817117 -8465372 + MLT1D LTR MaLR 20 503 -2 1949 141 0 22 chr12 135817453 135817772 -8464717 - AluJo SINE Alu 0 312 1 2648 167 75 4 chr12 135818516 135818970 -8463519 + MER66B LTR ERV1 1 486 0 180 0 0 0 chr12 135819316 135819336 -8463153 + (TA)n Simple_repeat Simple_repeat 2 21 0 1942 129 0 21 chr12 135819338 135819488 -8463001 - AluSx SINE Alu -31 281 129 192 97 0 0 chr12 135819488 135819519 -8462970 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1990 99 7 7 chr12 135819519 135819802 -8462687 - AluSg SINE Alu -27 283 1 1942 129 0 21 chr12 135819802 135819937 -8462552 - AluSx SINE Alu -181 131 1 213 94 0 0 chr12 135820376 135820408 -8462081 + (TG)n Simple_repeat Simple_repeat 2 33 0 210 314 26 90 chr12 135820727 135820883 -8461606 + MIR3 SINE MIR 1 146 -62 565 258 0 0 chr12 135820958 135821078 -8461411 - L2 LINE L2 -3 3310 3191 475 242 15 30 chr12 135821698 135821830 -8460659 - MIR SINE MIR -120 142 13 366 121 0 17 chr12 135821920 135821978 -8460511 + AluJ/FLAM SINE Alu 1 57 -245 * 447 275 107 77 chr12 135821968 135822140 -8460349 - Charlie8 DNA MER1_type -26 1391 1226 1928 131 0 40 chr12 135822140 135822461 -8460028 - AluJb SINE Alu -4 308 1 447 275 107 77 chr12 135822461 135822590 -8459899 - Charlie8 DNA MER1_type -191 1226 24 827 178 0 0 chr12 135823746 135823875 -8458614 + AluJo/FLAM SINE Alu 1 129 -173 1922 110 3 20 chr12 135823877 135824169 -8458320 + AluSq SINE Alu 5 291 -22 37 0 0 0 chr12 135824169 135824206 -8458283 + AT_rich Low_complexity Low_complexity 1 37 0 1130 298 143 19 chr12 135824698 135825215 -8457274 - MLT1K LTR MaLR -1 587 7 1953 202 106 2 chr12 135825387 135825822 -8456667 + MLT1D LTR MaLR 26 505 0 1842 139 3 44 chr12 135825936 135826252 -8456237 - AluJb SINE Alu -9 303 1 784 330 50 11 chr12 135826498 135826856 -8455633 + LTR16B LTR ERVL 93 464 0 1641 184 3 16 chr12 135826889 135827205 -8455284 + AluJo SINE Alu 1 312 0 288 231 55 11 chr12 135827261 135827352 -8455137 - MER91A DNA MER1_type -101 95 1 224 286 39 0 chr12 135827603 135827680 -8454809 + MIR SINE MIR 53 132 -76 232 254 72 43 chr12 135828083 135828221 -8454268 + MER113 DNA MER1_type? 1 142 -379 1104 280 65 54 chr12 135828236 135828696 -8453793 + L1ME3 LINE L1 5668 6132 -30 469 15 15 30 chr12 135828707 135828774 -8453715 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 2081 90 18 0 chr12 135828812 135829089 -8453400 + AluSx SINE Alu 20 301 -11 392 158 0 12 chr12 135829106 135829188 -8453301 + GA-rich Low_complexity Low_complexity 2 82 0 913 230 65 55 chr12 135829722 135829994 -8452495 + MLT1J LTR MaLR 5 368 -143 1933 123 0 7 chr12 135829994 135830305 -8452184 - AluJo SINE Alu 0 309 1 913 230 65 55 chr12 135830305 135830448 -8452041 + MLT1J LTR MaLR 368 508 -3 1903 129 0 4 chr12 135830928 135831207 -8451282 + AluSx SINE Alu 33 310 -2 250 218 0 0 chr12 135831865 135831920 -8450569 - Charlie7 DNA MER1_type -2199 413 359 1690 151 39 18 chr12 135831933 135832218 -8450271 - AluJo SINE Alu -21 291 1 271 322 68 0 chr12 135832218 135832336 -8450153 - Charlie7 DNA MER1_type -2233 379 254 510 242 121 6 chr12 135832354 135832519 -8449970 - MIR SINE MIR 0 262 79 991 185 9 45 chr12 135832520 135832742 -8449747 - MLT1A1 LTR MaLR -151 214 1 1768 141 7 39 chr12 135832770 135833076 -8449413 + AluJo SINE Alu 1 296 -16 1019 312 51 9 chr12 135833085 135833678 -8448811 + L1ME3A LINE L1 5479 6133 -31 2160 103 3 0 chr12 135833717 135834019 -8448470 - AluSq SINE Alu -9 304 2 1660 132 40 30 chr12 135834105 135834408 -8448081 + AluJo SINE Alu 1 306 -6 1842 121 4 4 chr12 135834408 135834673 -8447816 - AluSx SINE Alu -21 291 27 25 0 0 0 chr12 135834673 135834698 -8447791 + AT_rich Low_complexity Low_complexity 1 25 0 462 289 13 2 chr12 135834904 135835057 -8447432 + MIR SINE MIR 33 185 -62 304 301 141 15 chr12 135835086 135835292 -8447197 - L2 LINE L2 -2 3311 3080 467 270 36 8 chr12 135835464 135835625 -8446864 + L1MB4 LINE L1 5660 5824 -350 1638 196 67 0 chr12 135835688 135836030 -8446459 + L1MB4 LINE L1 5816 6180 0 1914 161 0 0 chr12 135836038 135836348 -8446141 + AluJo SINE Alu 1 310 -2 243 0 0 0 chr12 135836348 135836375 -8446114 + (CA)n Simple_repeat Simple_repeat 2 28 0 270 253 63 0 chr12 135836376 135836455 -8446034 + LTR16A1 LTR ERVL 213 296 -161 2196 125 0 0 chr12 135836631 135836944 -8445545 + AluSq SINE Alu 1 313 0 715 118 8 16 chr12 135836992 135837119 -8445370 + (GGAAA)n Simple_repeat Simple_repeat 4 129 0 203 195 0 0 chr12 135838244 135838285 -8444204 - L2 LINE L2 -2 3311 3271 377 332 121 48 chr12 135838395 135838726 -8443763 - MLT1H LTR MaLR -182 367 13 303 314 60 98 chr12 135838810 135839176 -8443313 - L2 LINE L2 -1 3271 2920 1835 132 9 2 chr12 135839372 135839676 -8442813 + L1PA13 LINE L1 5762 6071 -92 1983 93 35 10 chr12 135839701 135840013 -8442476 + HSMAR1 DNA Mariner 2 321 -966 3571 78 4 0 chr12 135840018 135840490 -8441999 + HSMAR1 DNA Mariner 812 1285 -2 689 65 0 0 chr12 135840492 135840585 -8441904 + L1PA13 LINE L1 6071 6163 0 943 183 5 40 chr12 135840793 135840995 -8441494 + L1PB3 LINE L1 5959 6153 -1 453 336 26 35 chr12 135841216 135841442 -8441047 - MIR SINE MIR -25 237 14 1912 251 57 30 chr12 135841519 135842482 -8440007 - L2 LINE L2 0 3313 2315 540 192 50 0 chr12 135843013 135843133 -8439356 + MIR SINE MIR 59 184 -78 267 336 154 14 chr12 135843174 135843317 -8439172 + MLT1I LTR MaLR 39 201 -208 320 156 31 94 chr12 135843377 135843473 -8439016 + MLT1I LTR MaLR 316 405 -4 326 263 12 0 chr12 135843478 135843558 -8438931 + MIR SINE MIR 182 262 0 918 237 113 70 chr12 135843605 135843934 -8438555 + MLT1E LTR MaLR 2 344 -249 388 250 42 10 chr12 135843935 135844031 -8438458 - MER81 DNA DNA -1 113 15 * 395 281 11 0 chr12 135844013 135844102 -8438387 - MER81 DNA DNA -16 98 9 2113 167 46 3 chr12 135844102 135844474 -8438015 - MLT1B LTR MaLR 0 390 3 828 171 108 0 chr12 135844493 135844669 -8437820 + MLT1E LTR MaLR 340 534 -59 906 85 0 0 chr12 135844670 135844818 -8437671 + AluSc SINE Alu 162 309 0 257 286 0 0 chr12 135844820 135844883 -8437606 + MLT1E LTR MaLR 530 592 -1 308 266 13 0 chr12 135845378 135845457 -8437032 - MER103 DNA DNA -24 142 63 2177 121 0 3 chr12 135845505 135845811 -8436678 - AluSx SINE Alu -7 305 1 379 329 43 6 chr12 135845818 135845979 -8436510 - MIR SINE MIR -69 193 27 223 125 62 50 chr12 135846321 135846401 -8436088 + (TTATA)n Simple_repeat Simple_repeat 2 82 0 443 229 10 0 chr12 135846484 135846580 -8435909 - MIR SINE MIR -70 192 96 2312 51 20 3 chr12 135846645 135846938 -8435551 - AluY SINE Alu -13 298 1 277 337 0 0 chr12 135847040 135847126 -8435363 - MIR SINE MIR -14 248 163 280 149 0 0 chr12 135847130 135847177 -8435312 - MER103 DNA DNA -54 112 66 621 217 57 38 chr12 135847177 135847334 -8435155 - MIR SINE MIR -87 175 16 847 294 69 26 chr12 135847783 135848130 -8434359 - MLT1K LTR MaLR -7 581 220 324 267 67 0 chr12 135848317 135848467 -8434022 + LTR33 LTR ERVL 1 160 -361 300 271 133 35 chr12 135848510 135848713 -8433776 + LTR33 LTR ERVL 279 501 -20 868 137 0 0 chr12 135848863 135848994 -8433495 + L1MB3 LINE L1 6039 6169 -14 2158 95 7 13 chr12 135849603 135849909 -8432580 + AluSg SINE Alu 1 304 -6 1637 184 27 59 chr12 135849954 135850064 -8432425 - Charlie5 DNA MER1_type 0 2624 2512 1822 155 0 13 chr12 135850064 135850367 -8432122 + AluJb SINE Alu 13 311 -1 1637 184 27 59 chr12 135850367 135850842 -8431647 - Charlie5 DNA MER1_type -112 2512 3 2283 72 3 0 chr12 135850862 135851155 -8431334 + AluSq SINE Alu 1 294 -19 327 236 11 11 chr12 135851207 135851296 -8431193 - L1ME2 LINE L1 -233 5931 5843 775 270 33 14 chr12 135851368 135851680 -8430809 - L2 LINE L2 -234 3079 2762 1484 248 80 22 chr12 135851707 135851773 -8430716 - L1ME2 LINE L1 -255 5909 5848 2227 128 14 28 chr12 135851773 135852133 -8430356 - THE1A LTR MaLR 0 355 1 1484 248 80 22 chr12 135852133 135852578 -8429911 - L1ME2 LINE L1 -316 5848 5373 1796 126 0 7 chr12 135852812 135853081 -8429408 + AluSx SINE Alu 1 267 -45 1871 156 0 10 chr12 135853091 135853380 -8429109 - AluJb SINE Alu -26 286 1 313 99 62 111 chr12 135853380 135853434 -8429055 + MLT1A1 LTR MaLR 289 339 -26 2168 132 40 6 chr12 135853434 135853760 -8428729 + MER1B DNA MER1_type 1 337 0 313 99 62 111 chr12 135853760 135853786 -8428703 + MLT1A1 LTR MaLR 339 365 0 656 300 117 25 chr12 135853786 135854103 -8428386 - MLT1L LTR MaLR -81 534 189 180 77 0 0 chr12 135854603 135854629 -8427860 + (TC)n Simple_repeat Simple_repeat 2 27 0 408 348 90 17 chr12 135854800 135855145 -8427344 - L2 LINE L2 -30 3242 2873 905 103 0 44 chr12 135855328 135855464 -8427025 - FLAM_C SINE Alu -13 130 1 2181 96 0 0 chr12 135855624 135855951 -8426538 - AluSx SINE Alu 0 327 1 1968 138 0 0 chr12 135855951 135856247 -8426242 - AluJo SINE Alu -16 296 1 432 277 117 26 chr12 135856341 135856591 -8425898 - MLT1E1 LTR MaLR -332 261 1 515 182 0 0 chr12 135857032 135857120 -8425369 - MIR SINE MIR -117 145 58 245 214 18 0 chr12 135857120 135857176 -8425313 + MLT1K LTR MaLR 530 586 -2 268 282 48 58 chr12 135857209 135857237 -8425252 - MER112 DNA MER1_type -153 107 80 330 26 0 0 chr12 135857237 135857276 -8425213 + (TG)n Simple_repeat Simple_repeat 2 40 0 268 282 48 58 chr12 135857276 135857350 -8425139 - MER112 DNA MER1_type -180 80 6 2032 133 0 0 chr12 135857351 135857680 -8424809 + AluSx SINE Alu 1 329 0 429 231 29 0 chr12 135857703 135857807 -8424682 + MER5A DNA MER1_type 3 109 -80 684 183 3 0 chr12 135858380 135858675 -8423814 + (CCCA)n Simple_repeat Simple_repeat 1 296 0 323 290 20 0 chr12 135858677 135858777 -8423712 - L2 LINE L2 0 3313 3212 * 338 303 71 19 chr12 135858771 135858946 -8423543 + MIR3 SINE MIR 66 250 -12 818 271 127 40 chr12 135859060 135859455 -8423034 + MLT1L LTR MaLR 180 608 -7 613 206 61 8 chr12 135859835 135859966 -8422523 + MIR SINE MIR 60 197 -65 1058 215 32 0 chr12 135860401 135860620 -8421869 - MIR SINE MIR 0 262 37 412 268 0 56 chr12 135861131 135861273 -8421216 - MIR3 SINE MIR -62 146 13 860 216 0 0 chr12 135861340 135861493 -8420996 - FRAM SINE Alu -16 160 8 488 287 92 10 chr12 135861536 135861731 -8420758 + MLT1K LTR MaLR 87 297 -291 2214 162 61 25 chr12 135861756 135862200 -8420289 - MLT1D LTR MaLR -45 460 1 401 239 45 22 chr12 135862226 135862360 -8420129 + MLT1K LTR MaLR 408 544 -44 195 42 0 0 chr12 135862362 135862386 -8420103 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 210 339 181 0 chr12 135862450 135862577 -8419912 + L2 LINE L2 3121 3270 -2 253 170 0 0 chr12 135863284 135863331 -8419158 + L2 LINE L2 2930 2976 -296 313 283 337 27 chr12 135863445 135863629 -8418860 - MIR SINE MIR -21 241 1 206 209 264 11 chr12 135863702 135863793 -8418696 + L2 LINE L2 3200 3313 0 383 183 82 0 chr12 135863793 135863879 -8418610 + MIR SINE MIR 69 162 -62 222 264 54 70 chr12 135864963 135865092 -8417397 - L2 LINE L2 -94 3219 3093 203 242 30 0 chr12 135865184 135865250 -8417239 + GA-rich Low_complexity Low_complexity 4 71 0 1870 143 23 0 chr12 135865400 135865700 -8416789 - AluJo SINE Alu -5 307 1 525 239 39 0 chr12 135865702 135865832 -8416657 + MER58C DNA MER1_type 79 213 -2 733 229 23 23 chr12 135866176 135866351 -8416138 - MLT1K LTR MaLR -2 586 412 860 148 311 29 chr12 135866358 135866602 -8415887 - AluYb8 SINE Alu -5 313 1 829 256 32 32 chr12 135866602 135866897 -8415592 - MLT1K LTR MaLR -190 398 1 244 164 18 36 chr12 135866934 135866989 -8415500 - MIR3 SINE MIR -52 156 103 397 273 108 14 chr12 135867142 135867281 -8415208 + L2 LINE L2 3121 3272 0 269 160 20 0 chr12 135867433 135867483 -8415006 + L2 LINE L2 3263 3313 0 225 119 0 0 chr12 135867579 135867621 -8414868 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 497 286 125 16 chr12 135868236 135868428 -8414061 + MIR SINE MIR 50 262 0 252 127 73 0 chr12 135869138 135869193 -8413296 + MIR SINE MIR 88 146 -116 473 242 143 6 chr12 135869716 135869877 -8412612 - MER5A DNA MER1_type 0 189 7 2202 95 14 0 chr12 135869902 135870198 -8412291 + AluSx SINE Alu 1 300 -12 561 240 128 0 chr12 135870311 135870490 -8411999 + MER20 DNA MER1_type 4 205 -14 1564 232 20 23 chr12 135870496 135870859 -8411630 + L1MB7 LINE L1 5661 6023 -161 1826 135 3 44 chr12 135870859 135871178 -8411311 - AluSq SINE Alu -7 306 1 1751 172 3 3 chr12 135871179 135871481 -8411008 - AluJb SINE Alu -7 305 4 1564 232 20 23 chr12 135871481 135871512 -8410977 + L1MB7 LINE L1 6022 6056 -128 359 196 203 55 chr12 135871641 135871804 -8410685 - MIR SINE MIR -12 250 64 355 317 18 4 chr12 135872384 135872531 -8409958 + MIR SINE MIR 6 149 -59 455 281 85 38 chr12 135873150 135873385 -8409104 + MLT1J LTR MaLR 231 476 -35 1700 136 63 33 chr12 135873397 135873699 -8408790 - AluJo SINE Alu -1 311 1 242 85 21 64 chr12 135873699 135873746 -8408743 + MLT1J2 LTR MaLR 406 450 0 227 224 0 0 chr12 135874125 135874174 -8408315 - L2 LINE L2 -1 3312 3264 343 238 54 0 chr12 135874174 135874304 -8408185 - L2 LINE L2 -14 3299 3158 1067 270 74 33 chr12 135874560 135874927 -8407562 + MLT1I LTR MaLR 28 409 0 216 323 20 10 chr12 135874927 135875026 -8407463 - MIR SINE MIR -116 146 47 1001 283 20 37 chr12 135875460 135875760 -8406729 + MLT1K LTR MaLR 16 310 -278 268 296 0 25 chr12 135875772 135875853 -8406636 + L2 LINE L2 3193 3271 -1 275 317 83 8 chr12 135875861 135875981 -8406508 + MIR SINE MIR 33 161 -101 720 255 160 37 chr12 135876079 135876373 -8406116 - MLT1H LTR MaLR -195 354 25 433 261 34 8 chr12 135876437 135876556 -8405933 + L2 LINE L2 3183 3304 -9 622 292 98 0 chr12 135877687 135877909 -8404580 - MIR SINE MIR -16 246 2 3048 131 37 50 chr12 135877964 135877997 -8404492 + L1MB2 LINE L1 5613 5645 -526 1657 181 4 0 chr12 135877997 135878301 -8404188 - AluJo SINE Alu 0 305 1 3048 131 37 50 chr12 135878301 135878430 -8404059 + L1MB2 LINE L1 5645 5774 -397 387 105 0 0 chr12 135878430 135878487 -8404002 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 3048 131 37 50 chr12 135878487 135878888 -8403601 + L1MB2 LINE L1 5774 6171 0 1665 237 77 47 chr12 135878990 135879521 -8402968 + MLT1H LTR MaLR 3 549 0 285 303 124 6 chr12 135879957 135880135 -8402354 - L2 LINE L2 -493 2821 2623 793 158 0 50 chr12 135881425 135881564 -8400925 + FLAM_C SINE Alu 1 132 -1 664 217 45 0 chr12 135881721 135881878 -8400611 + MER20 DNA MER1_type 1 164 -55 266 267 27 0 chr12 135882168 135882243 -8400246 - MIR SINE MIR -78 184 108 291 331 58 0 chr12 135882315 135882436 -8400053 + MIR SINE MIR 73 200 -62 519 340 37 0 chr12 135882935 135883150 -8399339 + MIR SINE MIR 22 244 -18 1780 105 0 0 chr12 135883173 135883412 -8399077 + AluSx SINE Alu 61 299 -13 372 337 28 14 chr12 135883565 135883777 -8398712 + MIR SINE MIR 25 242 -20 483 277 8 8 chr12 135884192 135884322 -8398167 + L2 LINE L2 3183 3312 -1 299 264 0 0 chr12 135884333 135884405 -8398084 - MIR SINE MIR -12 250 179 1092 293 55 14 chr12 135884422 135884784 -8397705 - MLT1I LTR MaLR 0 409 33 630 252 0 13 chr12 135884801 135884952 -8397537 - MIR SINE MIR -103 159 11 495 246 25 75 chr12 135885125 135885178 -8397311 + Charlie8 DNA MER1_type 11 65 -2352 2005 136 0 0 chr12 135885178 135885472 -8397017 - AluJb SINE Alu -18 294 1 495 246 25 75 chr12 135885472 135885617 -8396872 + Charlie8 DNA MER1_type 65 199 -2218 1985 131 0 13 chr12 135885777 135886082 -8396407 + AluSx SINE Alu 1 301 -11 225 324 15 0 chr12 135886250 135886318 -8396171 + Charlie8 DNA MER1_type 1349 1417 -1000 250 279 59 52 chr12 135886562 135886698 -8395791 - MIR SINE MIR -50 212 76 710 298 32 20 chr12 135887888 135888136 -8394353 + MIR SINE MIR 4 254 -8 2266 109 0 0 chr12 135888219 135888531 -8393958 - AluSx SINE Alu 0 312 1 1715 131 36 0 chr12 135889692 135889799 -8392690 + AluJo SINE Alu 13 115 -197 351 0 0 0 chr12 135889799 135889838 -8392651 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1715 131 36 0 chr12 135889838 135890005 -8392484 + AluJo SINE Alu 115 297 -15 2234 110 0 0 chr12 135890006 135890316 -8392173 + AluSg SINE Alu 1 310 0 340 318 137 19 chr12 135890342 135890519 -8391970 + L2 LINE L2 2412 2567 -747 216 0 0 0 chr12 135890519 135890543 -8391946 + (CCA)n Simple_repeat Simple_repeat 1 24 0 340 318 137 19 chr12 135890543 135890686 -8391803 + L2 LINE L2 2567 2770 -544 3370 184 82 76 chr12 135890742 135890996 -8391493 + MER21B LTR ERV1 1 252 -611 1706 110 4 33 chr12 135890996 135891269 -8391220 + L1MA1 LINE L1 6037 6301 -1 3370 184 82 76 chr12 135891269 135891871 -8390618 + MER21B LTR ERV1 252 862 -1 267 302 65 78 chr12 135891879 135892263 -8390226 + L2 LINE L2 2859 3237 -76 1945 113 65 0 chr12 135892289 135892582 -8389907 - AluSx SINE Alu 0 312 1 265 196 0 0 chr12 135892778 135892824 -8389665 + LTR16A1 LTR ERVL 409 454 -3 216 280 0 0 chr12 135892846 135892896 -8389593 + L2 LINE L2 3264 3313 0 231 286 18 0 chr12 135892934 135892990 -8389499 + L2 LINE L2 3248 3304 -9 1686 112 85 0 chr12 135893052 135893362 -8389127 - AluSg SINE Alu 0 332 1 246 194 56 14 chr12 135893442 135893514 -8388975 - MIR SINE MIR -87 121 47 336 285 8 11 chr12 135894306 135894428 -8388061 - MIR SINE MIR -22 186 62 285 327 112 9 chr12 135894422 135894529 -8387960 + L2 LINE L2 3152 3269 -3 * 434 33 17 0 chr12 135895402 135895462 -8387027 + (CA)n Simple_repeat Simple_repeat 2 62 0 1850 125 36 20 chr12 135895475 135895780 -8386709 + AluJb SINE Alu 1 310 -2 1114 249 136 14 chr12 135896130 135896483 -8386006 + Charlie2 DNA MER1_type 1873 2268 -594 1661 246 72 82 chr12 135896484 135896743 -8385746 + L1ME1 LINE L1 5425 5685 -481 2151 152 16 27 chr12 135896743 135897111 -8385378 + THE1B LTR MaLR 1 364 0 1661 246 72 82 chr12 135897111 135897409 -8385080 + L1ME1 LINE L1 5685 5976 -190 1786 158 13 3 chr12 135897409 135897707 -8384782 + AluJo SINE Alu 1 301 -11 1661 246 72 82 chr12 135897707 135897847 -8384642 + L1ME1 LINE L1 5976 6116 -50 1185 155 136 109 chr12 135898007 135898345 -8384144 + MLT1B LTR MaLR 1 351 -39 1770 143 10 10 chr12 135898345 135898639 -8383850 - AluJb SINE Alu -18 294 1 1185 155 136 109 chr12 135898639 135898668 -8383821 + MLT1B LTR MaLR 351 378 -12 1010 243 78 27 chr12 135898650 135899062 -8383427 + Charlie2 DNA MER1_type 2346 2778 -84 * 208 150 100 0 chr12 135900659 135900699 -8381790 - MIR SINE MIR -55 153 110 1748 135 24 10 chr12 135900813 135901109 -8381380 - AluJo SINE Alu -12 300 1 219 69 0 0 chr12 135901960 135901989 -8380500 + (TCC)n Simple_repeat Simple_repeat 2 30 0 412 318 106 0 chr12 135902077 135902228 -8380261 + MER91A DNA MER1_type 2 168 -28 560 213 45 109 chr12 135903464 135903666 -8378823 - MER53 DNA DNA 0 189 1 189 0 0 0 chr12 135903748 135903769 -8378720 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2261 81 3 10 chr12 135903772 135904068 -8378421 - AluSx SINE Alu -18 294 1 398 311 40 13 chr12 135904087 135904238 -8378251 - MER5A DNA MER1_type 0 189 35 280 343 48 14 chr12 135904111 135904257 -8378232 + MER5A DNA MER1_type 36 186 -3 * 1078 143 0 0 chr12 135905083 135905244 -8377245 - FRAM SINE Alu -16 160 1 2010 105 3 46 chr12 135905348 135905672 -8376817 + AluSg SINE Alu 1 310 0 436 285 128 6 chr12 135906971 135907410 -8375079 + L2 LINE L2 2569 3065 -248 1083 192 65 25 chr12 135907454 135907730 -8374759 + MER33 DNA MER1_type 27 313 -11 246 285 67 83 chr12 135907741 135907934 -8374555 + L2 LINE L2 3122 3311 -2 440 247 0 0 chr12 135908518 135908611 -8373878 + MLT1J2 LTR MaLR 44 136 -314 326 259 46 28 chr12 135908664 135908772 -8373717 + MLT1J1 LTR MaLR 266 375 -71 230 29 59 0 chr12 135908851 135908885 -8373604 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 835 190 186 12 chr12 135909354 135909596 -8372893 + LTR64 LTR ERVK 275 558 0 1387 107 49 21 chr12 135909742 135909985 -8372504 + Tigger7 DNA MER2_type 2229 2478 -9 1085 254 70 85 chr12 135910116 135910632 -8371857 + MLT1J LTR MaLR 4 511 0 275 271 135 0 chr12 135910638 135910734 -8371755 + L1ME LINE L1 5620 5728 -393 1552 202 23 0 chr12 135910940 135911282 -8371207 + L1MC3 LINE L1 7173 7522 -263 409 271 8 53 chr12 135911284 135911417 -8371072 + MLT1D LTR MaLR 50 176 -329 * 496 238 25 0 chr12 135911384 135911506 -8370983 + MLT1D LTR MaLR 85 209 -296 21 36 0 0 chr12 135911558 135911586 -8370903 + AT_rich Low_complexity Low_complexity 1 28 0 2267 86 0 0 chr12 135911595 135911886 -8370603 + AluSc SINE Alu 5 295 -14 924 211 96 64 chr12 135911886 135911953 -8370536 + MLT1D LTR MaLR 184 247 -258 1803 144 0 14 chr12 135911953 135912262 -8370227 + AluJo SINE Alu 1 305 0 924 211 96 64 chr12 135912262 135912505 -8369984 + MLT1D LTR MaLR 247 505 0 717 240 93 32 chr12 135912596 135912666 -8369823 + MIR SINE MIR 2 66 -196 2729 198 37 6 chr12 135912666 135913211 -8369278 + MER68 LTR ERV1 1 562 0 717 240 93 32 chr12 135913211 135913386 -8369103 + MIR SINE MIR 66 262 0 2263 68 14 0 chr12 135913535 135913827 -8368662 + AluSq SINE Alu 1 296 -17 2059 110 37 0 chr12 135914311 135914610 -8367879 + AluSx SINE Alu 1 310 -2 500 295 0 7 chr12 135914622 135914761 -8367728 + Charlie8 DNA MER1_type 97 234 -2183 3079 179 40 74 chr12 135915205 135915273 -8367216 + L1MB8 LINE L1 5489 5558 -626 2559 33 3 0 chr12 135915273 135915578 -8366911 + AluY SINE Alu 1 306 -5 3079 179 40 74 chr12 135915578 135916229 -8366260 + L1MB8 LINE L1 5558 6184 0 1059 16 0 0 chr12 135916258 135916381 -8366108 - AluY SINE Alu -9 302 180 2101 108 3 0 chr12 135916509 135916829 -8365660 + AluSp SINE Alu 1 313 0 702 260 53 40 chr12 135917524 135917824 -8364665 - MER113 DNA MER1_type? -82 439 136 1752 133 83 0 chr12 135917833 135918111 -8364378 - AluSx SINE Alu -11 301 1 808 177 0 0 chr12 135918126 135918250 -8364239 - AluJb SINE Alu -188 124 1 2501 197 51 4 chr12 135918693 135919186 -8363303 + MER68 LTR ERV1 1 516 -46 3076 167 50 82 chr12 135919735 135919989 -8362500 + L1MA8 LINE L1 5557 5818 -473 2090 126 0 0 chr12 135919989 135920291 -8362198 + AluSx SINE Alu 1 302 -10 3076 167 50 82 chr12 135920291 135920421 -8362068 + L1MA8 LINE L1 5818 5951 -340 2227 99 0 3 chr12 135920421 135920725 -8361764 + AluSq SINE Alu 1 303 -10 3076 167 50 82 chr12 135920725 135921095 -8361394 + L1MA8 LINE L1 5951 6288 -3 1935 144 0 7 chr12 135921103 135921401 -8361088 + AluJb SINE Alu 1 296 -16 1714 168 31 0 chr12 135922788 135923074 -8359415 + AluJb SINE Alu 1 295 -17 1191 164 49 4 chr12 135923098 135923323 -8359166 + L1MB5 LINE L1 5932 6166 -8 216 0 0 0 chr12 135923327 135923351 -8359138 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1819 110 11 33 chr12 135923363 135923635 -8358854 + AluSx SINE Alu 1 266 -46 540 154 0 0 chr12 135923639 135923730 -8358759 + AluSg/x SINE Alu 211 301 -8 2197 97 7 0 chr12 135923731 135924030 -8358459 + AluSp SINE Alu 1 301 -12 251 219 15 117 chr12 135925091 135925159 -8357330 + L1ME3A LINE L1 6047 6096 -74 1704 142 42 3 chr12 135925159 135925448 -8357041 + AluJb SINE Alu 1 300 -12 251 219 15 117 chr12 135925448 135925516 -8356973 + L1ME3A LINE L1 6096 6169 -1 234 0 0 0 chr12 135925552 135925578 -8356911 + (A)n Simple_repeat Simple_repeat 1 26 0 983 187 11 5 chr12 135925585 135925772 -8356717 + AluJb SINE Alu 122 309 -3 966 294 106 16 chr12 135925948 135926383 -8356106 + MLT1K LTR MaLR 1 474 -2 557 314 47 86 chr12 135926812 135927435 -8355054 - L2 LINE L2 -14 3299 2709 1549 162 10 40 chr12 135927435 135927732 -8354757 - AluJo SINE Alu -24 288 1 557 314 47 86 chr12 135927732 135927762 -8354727 - L2 LINE L2 -604 2709 2679 864 245 5 0 chr12 135927772 135927960 -8354529 + MER3 DNA MER1_type 13 201 -8 1411 228 45 52 chr12 135928376 135928475 -8354014 + MLT1D LTR MaLR 31 129 -376 1644 166 0 26 chr12 135928475 135928777 -8353712 + AluJb SINE Alu 1 294 -18 2117 117 0 7 chr12 135928779 135929086 -8353403 + AluSx SINE Alu 1 305 -7 1411 228 45 52 chr12 135929086 135929449 -8353040 + MLT1D LTR MaLR 130 493 -12 407 295 95 55 chr12 135929844 135930036 -8352453 + L2 LINE L2 2518 2701 -612 938 110 0 0 chr12 135930036 135930163 -8352326 + FLAM_C SINE Alu 1 127 -6 407 295 95 55 chr12 135930163 135930539 -8351950 + L2 LINE L2 2701 3106 -207 981 218 84 20 chr12 135930579 135930877 -8351612 + MER33 DNA MER1_type 6 322 -2 952 249 70 11 chr12 135930878 135931151 -8351338 + L1MC4 LINE L1 7739 8027 -15 862 152 0 8 chr12 135931166 135931298 -8351191 + FLAM_C SINE Alu 2 132 -1 181 219 0 24 chr12 135932354 135932395 -8350094 + MIR SINE MIR 105 144 -118 329 340 26 52 chr12 135932903 135933097 -8349392 + L1MC4a LINE L1 5872 6060 -1748 1909 130 7 7 chr12 135933135 135933436 -8349053 - AluSq SINE Alu -12 301 1 783 279 51 35 chr12 135934125 135934437 -8348052 + MLT1I LTR MaLR 86 402 -7 190 341 24 0 chr12 135934735 135934817 -8347672 + MIR SINE MIR 179 262 0 547 260 30 12 chr12 135934894 135935063 -8347426 + MLT1J LTR MaLR 6 177 -334 656 221 31 67 chr12 135935151 135935346 -8347143 + MLT1J LTR MaLR 232 419 -92 487 234 47 8 chr12 135935824 135935952 -8346537 + MLT1K LTR MaLR 440 572 -16 310 389 7 7 chr12 135937221 135937360 -8345129 + MIR SINE MIR 123 261 -1 240 319 223 15 chr12 135937394 135937446 -8345043 + L2 LINE L2 2659 2699 -614 2131 101 7 0 chr12 135937446 135937743 -8344746 + AluSx SINE Alu 1 299 -13 240 319 223 15 chr12 135937743 135938218 -8344271 + L2 LINE L2 2699 3313 0 427 286 0 0 chr12 135938236 135938327 -8344162 + L2 LINE L2 3221 3311 -2 310 253 35 11 chr12 135938644 135938731 -8343758 - MIR SINE MIR -90 172 84 828 157 0 0 chr12 135938883 135939030 -8343459 + (TG)n Simple_repeat Simple_repeat 2 148 0 957 91 8 0 chr12 135939110 135939242 -8343247 + FLAM_C SINE Alu 11 143 0 364 290 26 26 chr12 135939951 135940106 -8342383 - L2 LINE L2 0 3313 3159 877 134 0 0 chr12 135940196 135940323 -8342166 + AluJ SINE Alu 1 127 -185 1106 134 6 0 chr12 135940324 135940496 -8341993 - AluSg/x SINE Alu -7 303 131 1853 131 19 47 chr12 135940496 135940817 -8341672 - AluSx SINE Alu 0 312 1 1106 158 0 35 chr12 135940817 135941019 -8341470 + AluJ SINE Alu 117 311 -1 237 254 56 28 chr12 135941715 135941786 -8340703 + MIR SINE MIR 90 162 -100 219 191 0 0 chr12 135992125 135992167 -8290322 + MIR SINE MIR 103 144 -118 648 267 71 29 chr12 135992387 135992627 -8289862 - MIR SINE MIR -1 261 12 710 234 6 6 chr12 135992783 135992941 -8289548 - FRAM SINE Alu -21 155 1 271 286 11 11 chr12 135993071 135993162 -8289327 + Charlie8 DNA MER1_type 79 169 -2248 238 172 0 0 chr12 135993165 135993212 -8289277 + MIR SINE MIR 99 145 -63 248 366 0 0 chr12 135993529 135993630 -8288859 - MIR SINE MIR -72 136 36 289 218 154 36 chr12 135993840 135993950 -8288539 - L2 LINE L2 -211 3061 2939 261 267 172 33 chr12 135994015 135994195 -8288294 - L2 LINE L2 -2 3311 3107 321 280 0 20 chr12 135995233 135995333 -8287156 + Charlie8 DNA MER1_type 78 175 -2242 181 156 0 0 chr12 135995341 135995373 -8287116 + MIR SINE MIR 113 144 -118 1077 241 52 68 chr12 135995461 135995690 -8286799 - L2 LINE L2 -17 3296 3065 2344 95 3 3 chr12 135995690 135995994 -8286495 - AluSq SINE Alu -9 304 1 1077 241 52 68 chr12 135995994 135996424 -8286065 - L2 LINE L2 -248 3065 2571 222 118 0 0 chr12 135997650 135997684 -8284805 + (A)n Simple_repeat Simple_repeat 1 34 0 180 182 52 0 chr12 135999163 135999240 -8283249 + (ATGGTG)n Simple_repeat Simple_repeat 3 83 0 1090 194 70 0 chr12 135999599 135999826 -8282663 + MIR SINE MIR 8 250 -12 295 273 11 11 chr12 135999901 135999989 -8282500 - LTR16C LTR ERVL -160 331 244 180 299 65 0 chr12 136000144 136000221 -8282268 - MIR SINE MIR -1 261 180 245 202 130 33 chr12 136000333 136000478 -8282011 - MIR SINE MIR -62 146 9 511 280 7 20 chr12 136000547 136000697 -8281792 + MIR SINE MIR 88 235 -27 1042 287 136 0 chr12 136001172 136001517 -8280972 + MLT1J2 LTR MaLR 41 432 -18 725 241 47 0 chr12 136001629 136001799 -8280690 + MER45A DNA AcHobo 1 178 0 1670 213 32 0 chr12 136003189 136003560 -8278929 + L1MB5 LINE L1 5784 6166 -8 235 250 0 0 chr12 136003732 136003784 -8278705 + MIR3 SINE MIR 111 162 -46 706 173 5 146 chr12 136003819 136003927 -8278562 - MER3 DNA MER1_type -3 206 143 1780 164 65 0 chr12 136003927 136004294 -8278195 + L1MB3 LINE L1 5793 6183 0 706 173 5 146 chr12 136004294 136004405 -8278084 - MER3 DNA MER1_type -66 143 18 258 258 216 10 chr12 136004465 136004562 -8277927 + L2 LINE L2 3192 3308 -5 667 268 76 18 chr12 136004571 136004795 -8277694 - Charlie8 DNA MER1_type -2176 241 5 3662 81 27 37 chr12 136005104 136005638 -8276851 + MER4A-int LTR ERV1 6013 6542 -56 2552 62 13 0 chr12 136005638 136005945 -8276544 - AluY SINE Alu 0 311 1 3662 81 27 37 chr12 136005945 136006000 -8276489 + MER4A-int LTR ERV1 6542 6596 -2 584 152 0 10 chr12 136006008 136006107 -8276382 + MER4A LTR ERV1 1 98 -566 1438 144 180 79 chr12 136006107 136006474 -8276015 + MER4A LTR ERV1 261 664 0 2238 122 0 10 chr12 136006527 136006821 -8275668 + AluSx SINE Alu 2 292 -20 643 152 19 0 chr12 136006824 136006929 -8275560 + AluSg/x SINE Alu 188 294 -18 660 265 50 17 chr12 136006947 136007185 -8275304 - L2 LINE L2 -803 2511 2266 265 277 71 71 chr12 136008039 136008151 -8274338 + MER5B DNA MER1_type 7 118 -60 866 135 0 81 chr12 136008193 136008263 -8274226 - AluJo SINE Alu -176 136 83 1997 142 3 3 chr12 136008263 136008558 -8273931 + AluSq SINE Alu 1 295 -18 866 135 0 81 chr12 136008558 136008635 -8273854 - AluJo SINE Alu -229 83 1 2446 185 33 6 chr12 136008774 136009292 -8273197 - L1MB5 LINE L1 -6 6168 5637 211 175 0 0 chr12 136009294 136009334 -8273155 - MER5B DNA MER1_type -123 55 16 250 271 171 8 chr12 136009774 136009903 -8272586 - L2 LINE L2 0 3313 3164 1474 294 91 17 chr12 136009983 136010523 -8271966 - MLT1K LTR MaLR -7 581 2 1087 291 51 18 chr12 136010554 136011045 -8271444 + LTR33 LTR ERVL 1 507 -14 1987 155 98 50 chr12 136011080 136011390 -8271099 - MLT1D LTR MaLR -4 501 159 2375 98 0 0 chr12 136011390 136011687 -8270802 - AluSx SINE Alu -9 303 7 1987 155 98 50 chr12 136011687 136011854 -8270635 - MLT1D LTR MaLR -346 159 1 1398 215 8 67 chr12 136011951 136012337 -8270152 - MLT1A2 LTR MaLR -11 363 1 2053 130 0 23 chr12 136013297 136013605 -8268884 - AluJb SINE Alu -11 301 1 499 304 145 32 chr12 136013635 136014076 -8268413 + L1MC4a LINE L1 5579 6069 -1739 35 41 0 0 chr12 136014120 136014169 -8268320 + AT_rich Low_complexity Low_complexity 1 49 0 304 276 55 16 chr12 136014402 136014529 -8267960 + L2 LINE L2 2970 3101 -171 296 288 67 75 chr12 136014585 136014852 -8267637 + ORSL DNA AcHobo 1 265 -10 1145 274 147 7 chr12 136014964 136015573 -8266916 - L2 LINE L2 -3 3310 2615 339 309 12 77 chr12 136016056 136016224 -8266265 + L1MC4a LINE L1 5889 6045 -1763 364 320 19 0 chr12 136016227 136016330 -8266159 + MIR SINE MIR 154 258 -4 1183 121 11 0 chr12 136017206 136017388 -8265101 - L1MB5 LINE L1 0 6174 5991 420 203 0 0 chr12 136017388 136017467 -8265022 - L1M4 LINE L1 -478 5696 5618 216 0 0 0 chr12 136017473 136017497 -8264992 + (A)n Simple_repeat Simple_repeat 1 24 0 261 294 31 21 chr12 136017876 136018016 -8264473 + MIR SINE MIR 143 248 -14 247 293 28 28 chr12 136018042 136018148 -8264341 + MIR SINE MIR 143 248 -14 201 242 45 0 chr12 136018148 136018214 -8264275 + MIR SINE MIR 180 248 -14 246 302 28 28 chr12 136018240 136018346 -8264143 + MIR SINE MIR 143 248 -14 233 227 45 0 chr12 136018346 136018412 -8264077 + MIR SINE MIR 180 248 -14 246 302 28 28 chr12 136018438 136018544 -8263945 + MIR SINE MIR 143 248 -14 246 302 28 28 chr12 136018703 136018809 -8263680 + MIR SINE MIR 143 248 -14 209 270 40 0 chr12 136018809 136018883 -8263606 + MIR SINE MIR 180 256 -6 406 178 40 92 chr12 136018938 136019090 -8263399 + LTR41 LTR ERVL 598 741 -32 191 354 0 0 chr12 136019776 136019841 -8262648 - L2 LINE L2 -28 3285 3221 491 294 104 26 chr12 136019993 136020196 -8262293 - MLT1K LTR MaLR -9 579 359 1315 235 81 63 chr12 136020196 136020709 -8261780 + MLT1E LTR MaLR 3 580 -6 943 297 14 24 chr12 136020712 136021002 -8261487 - MLT1K LTR MaLR -253 335 49 859 287 12 20 chr12 136021153 136021407 -8261082 - MIR SINE MIR -8 254 3 1699 201 71 57 chr12 136022565 136022644 -8259845 + MLT1D LTR MaLR 1 77 -428 1094 193 110 56 chr12 136022644 136023053 -8259436 + MSTB1 LTR MaLR 1 431 -1 1699 201 71 57 chr12 136023053 136023465 -8259024 + MLT1D LTR MaLR 77 499 -6 286 251 91 70 chr12 136023654 136023853 -8258636 + MLT1J LTR MaLR 226 428 -83 2403 96 0 34 chr12 136025800 136026122 -8256367 - AluY SINE Alu 0 311 1 200 294 118 39 chr12 136026377 136026530 -8255959 + MIR SINE MIR 63 227 -35 180 105 158 0 chr12 136027512 136027550 -8254939 + MIR SINE MIR 90 133 -75 265 346 88 0 chr12 136027627 136027763 -8254726 - L2 LINE L2 -3 3269 3122 186 107 0 0 chr12 136028035 136028063 -8254426 - MIR SINE MIR -63 145 118 1908 159 0 14 chr12 136028189 136028479 -8254010 + AluJb SINE Alu 15 300 -12 2147 107 24 0 chr12 136028482 136028771 -8253718 + AluSq SINE Alu 1 296 -17 2092 139 3 7 chr12 136029357 136029659 -8252830 + AluSx SINE Alu 2 302 -10 2546 60 0 16 chr12 136029659 136029975 -8252514 + AluY SINE Alu 1 311 0 1795 200 31 3 chr12 136030556 136030946 -8251543 + L1MB7 LINE L1 5765 6165 -19 1956 143 3 28 chr12 136030961 136031248 -8251241 + AluJb SINE Alu 1 280 -32 304 306 19 70 chr12 136031454 136031712 -8250777 + L2 LINE L2 2887 3131 -182 1735 88 4 4 chr12 136031804 136032030 -8250459 - AluSg/x SINE Alu -5 305 80 659 304 57 59 chr12 136032627 136033032 -8249457 - ERVL LTR ERVL -4322 1442 1039 433 297 41 41 chr12 136033257 136033377 -8249112 - ERVL LTR ERVL -4982 672 550 2360 107 0 0 chr12 136033377 136033675 -8248814 - AluSx SINE Alu -14 298 1 433 297 41 41 chr12 136033675 136033773 -8248716 - ERVL LTR ERVL -5103 551 454 304 252 54 95 chr12 136034226 136034311 -8248178 - LTR50 LTR ERVL 0 795 708 1890 135 67 0 chr12 136034311 136034593 -8247896 + AluJo SINE Alu 2 302 -10 2126 133 13 0 chr12 136034601 136034878 -8247611 + AluSx SINE Alu 1 284 -28 303 28 0 0 chr12 136034878 136034914 -8247575 + (CA)n Simple_repeat Simple_repeat 1 36 0 2126 133 13 0 chr12 136034914 136034938 -8247551 + AluSx SINE Alu 284 306 -6 304 252 54 95 chr12 136034938 136035029 -8247460 - LTR50 LTR ERVL -94 701 620 2309 113 0 0 chr12 136035029 136035322 -8247167 + AluSg SINE Alu 2 294 -16 304 252 54 95 chr12 136035322 136035377 -8247112 - LTR50 LTR ERVL -175 620 564 583 227 0 14 chr12 136035859 136036000 -8246489 - LTR41 LTR ERVL -634 139 1 2589 51 0 0 chr12 136036166 136036462 -8246027 + AluY SINE Alu 1 296 -15 1817 185 3 7 chr12 136036729 136037026 -8245463 - AluJo SINE Alu -16 296 1 226 275 29 14 chr12 136037062 136037131 -8245358 + MIR SINE MIR 83 152 -110 273 277 96 11 chr12 136037407 136037501 -8244988 - MLT1J LTR MaLR -174 337 236 467 219 10 0 chr12 136037536 136037632 -8244857 - MLT1E3 LTR MaLR -261 363 267 1237 295 43 11 chr12 136038130 136038649 -8243840 - L2 LINE L2 -2 3311 2774 1857 158 20 3 chr12 136038694 136038986 -8243503 + AluJo SINE Alu 1 297 -15 547 212 26 83 chr12 136039004 136039197 -8243292 + L2 LINE L2 3124 3305 -8 2065 193 118 30 chr12 136039198 136039768 -8242721 - MLT1E3 LTR MaLR 0 624 5 803 324 76 26 chr12 136039939 136040319 -8242170 + L2 LINE L2 2915 3313 0 583 195 1 13 chr12 136040726 136040859 -8241630 + MIR SINE MIR 20 148 -62 664 242 106 20 chr12 136041442 136041640 -8240849 + MER58C DNA MER1_type 1 215 0 669 304 18 14 chr12 136041771 136041988 -8240501 - MIR SINE MIR -25 237 20 1336 237 98 15 chr12 136042912 136043384 -8239105 + MLT1J LTR MaLR 1 511 0 444 280 20 9 chr12 136043447 136043599 -8238890 + MLT1H LTR MaLR 29 190 -321 318 218 106 21 chr12 136043728 136043883 -8238606 + MLT1G1 LTR MaLR 267 579 0 527 245 92 25 chr12 136045236 136045432 -8237057 + MIR SINE MIR 12 220 -42 707 245 0 0 chr12 136045570 136045713 -8236776 + FRAM SINE Alu 1 139 -37 213 39 0 0 chr12 136045713 136045739 -8236750 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1945 121 4 11 chr12 136045744 136046036 -8236453 + AluSx SINE Alu 32 312 0 772 235 20 20 chr12 136046072 136046272 -8236217 + MLT1K LTR MaLR 75 274 -314 297 171 114 0 chr12 136046285 136046355 -8236134 + MLT1K LTR MaLR 447 524 -64 2358 103 3 0 chr12 136046893 136047194 -8235295 + AluSq SINE Alu 1 302 -11 566 237 113 64 chr12 136048035 136048048 -8234441 - MIR SINE MIR 0 262 251 2362 64 4 0 chr12 136048048 136048362 -8234127 + AluSc SINE Alu 1 315 0 566 237 113 64 chr12 136048362 136048600 -8233889 - MIR SINE MIR -11 251 2 529 349 93 17 chr12 136048636 136048980 -8233509 + LTR67 LTR ERVL 185 554 -3 473 233 0 6 chr12 136049432 136049612 -8232877 + GA-rich Low_complexity Low_complexity 2 180 0 999 65 0 0 chr12 136049658 136049781 -8232708 + AluY SINE Alu 188 310 -1 313 198 18 0 chr12 136049800 136049911 -8232578 + GA-rich Low_complexity Low_complexity 1 113 0 292 237 26 52 chr12 136050123 136050238 -8232251 + L1ME LINE L1 5724 5835 -286 1503 229 28 0 chr12 136050281 136050608 -8231881 - MLT1A1 LTR MaLR 0 365 30 206 213 21 0 chr12 136051095 136051142 -8231347 - MIR SINE MIR -61 147 100 399 281 196 18 chr12 136051206 136051430 -8231059 + MLT1K LTR MaLR 15 278 -310 331 294 24 16 chr12 136051481 136051607 -8230882 - LTR16B LTR ERVL -18 446 320 40 21 0 0 chr12 136051631 136051678 -8230811 + AT_rich Low_complexity Low_complexity 1 47 0 2282 214 50 78 chr12 136052566 136052951 -8229538 + L1MC4 LINE L1 7317 7672 -370 2517 57 3 0 chr12 136052951 136053252 -8229237 - AluY SINE Alu -9 302 1 2282 214 50 78 chr12 136053252 136053613 -8228876 + L1MC4 LINE L1 7672 8042 0 479 223 71 87 chr12 136053626 136053868 -8228621 + MLT1L LTR MaLR 96 394 -193 392 257 114 21 chr12 136054003 136054143 -8228346 - MLT1I LTR MaLR -140 269 117 392 267 6 33 chr12 136054242 136054296 -8228193 + MER5B DNA MER1_type 38 92 -97 1635 138 0 4 chr12 136054296 136054535 -8227954 + AluSx SINE Alu 60 297 -15 392 267 6 33 chr12 136054535 136054585 -8227904 + MER5B DNA MER1_type 92 155 -34 1851 175 10 23 chr12 136054637 136055026 -8227463 - L1MB4 LINE L1 -1 6179 5796 405 163 0 0 chr12 136055049 136055129 -8227360 + L1MB7 LINE L1 5769 5848 -336 * 1674 200 10 1 chr12 136055090 136055439 -8227050 - L1PA5 LINE L1 -310 5844 5487 370 203 0 0 chr12 136055441 136055520 -8226969 - L1ME3 LINE L1 -70 6092 6014 549 233 147 6 chr12 136056548 136056711 -8225778 + MIR SINE MIR 77 262 0 387 287 87 13 chr12 136057179 136057329 -8225160 + MIR SINE MIR 4 164 -98 245 309 25 0 chr12 136057699 136057780 -8224709 + MIR SINE MIR 141 223 -39 390 266 154 24 chr12 136057839 136058008 -8224481 - Charlie8 DNA MER1_type -2226 191 1 399 250 97 0 chr12 136058038 136058162 -8224327 - MIR SINE MIR -114 148 13 2076 234 35 13 chr12 136058272 136058815 -8223674 - MLT1H1 LTR MaLR 0 555 1 1685 142 84 10 chr12 136059161 136059471 -8223018 - MER1B DNA MER1_type -4 333 1 757 296 14 0 chr12 136059643 136059866 -8222623 + MLT1K LTR MaLR 61 286 -302 494 229 61 141 chr12 136059916 136060037 -8222452 - MIR SINE MIR 0 262 172 2584 78 0 0 chr12 136060037 136060345 -8222144 - AluSx SINE Alu -4 308 1 494 229 61 141 chr12 136060345 136060485 -8222004 - MIR SINE MIR -90 172 22 739 176 61 24 chr12 136060502 136060667 -8221822 - MER53 DNA DNA -18 171 1 216 139 0 0 chr12 136060670 136060706 -8221783 - MIR SINE MIR -225 37 2 343 158 0 0 chr12 136061033 136061090 -8221399 - MLT1E3 LTR MaLR 0 624 568 1465 281 53 13 chr12 136061271 136061745 -8220744 + MLT1K LTR MaLR 86 578 -10 1984 115 0 112 chr12 136062195 136062543 -8219946 - AluSg SINE Alu -1 309 1 2803 71 88 7 chr12 136063050 136063089 -8219400 - MLT2A1 LTR ERVL 0 444 410 225 83 0 0 chr12 136063089 136063125 -8219364 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 2803 71 88 7 chr12 136063125 136063496 -8218993 - MLT2A1 LTR ERVL -34 410 1 1959 144 6 26 chr12 136064089 136064401 -8218088 - AluJb SINE Alu -6 306 1 237 221 0 0 chr12 136064441 136064509 -8217980 + (CA)n Simple_repeat Simple_repeat 1 68 0 241 272 35 70 chr12 136064761 136064961 -8217528 + MLT1J LTR MaLR 1 158 -292 216 67 0 0 chr12 136065558 136065588 -8216901 + (CA)n Simple_repeat Simple_repeat 1 30 0 2118 123 19 26 chr12 136065841 136066150 -8216339 + AluSx SINE Alu 1 307 -5 1863 150 4 4 chr12 136066973 136067253 -8215236 + AluJo SINE Alu 1 280 -32 1939 137 3 23 chr12 136067277 136067584 -8214905 + AluJb SINE Alu 1 301 -11 197 290 89 83 chr12 136067648 136067817 -8214672 - MER5B DNA MER1_type -6 172 3 245 167 33 33 chr12 136067853 136067913 -8214576 + MIR SINE MIR 80 139 -123 1662 85 151 8 chr12 136067928 136068187 -8214302 + AluSg1 SINE Alu 1 296 -13 27 29 0 0 chr12 136071390 136071424 -8211065 + AT_rich Low_complexity Low_complexity 1 34 0 1533 78 0 0 chr12 136071426 136071619 -8210870 + AluSg SINE Alu 1 193 -117 464 129 0 35 chr12 136071619 136071704 -8210785 + AluSg SINE Alu 229 310 -2 1794 161 3 0 chr12 136071811 136072103 -8210386 + AluJo SINE Alu 1 293 -19 249 337 125 40 chr12 136073853 136074182 -8208307 - L1ME LINE L1 -257 5913 5557 2065 123 7 7 chr12 136075128 136075437 -8207052 + AluSx SINE Alu 1 309 -3 909 85 0 0 chr12 136075721 136075839 -8206650 - AluSp/q SINE Alu -20 293 176 918 133 0 14 chr12 136075940 136076083 -8206406 + AluJb SINE Alu 160 300 -12 204 222 0 0 chr12 136076200 136076245 -8206244 + (CA)n Simple_repeat Simple_repeat 2 46 0 2066 129 0 10 chr12 136076403 136076705 -8205784 + AluSx SINE Alu 1 299 -13 362 283 105 20 chr12 136076741 136076996 -8205493 - L1ME4a LINE L1 -222 5899 5699 673 274 50 5 chr12 136077011 136077212 -8205277 - MER82 DNA MER2_type 0 653 444 283 342 38 13 chr12 136077247 136077405 -8205084 + MIR SINE MIR 44 205 -57 334 278 44 0 chr12 136077429 136077519 -8204970 - MER82 DNA MER2_type -559 94 1 1383 169 71 4 chr12 136078349 136078604 -8203885 - AluJo SINE Alu -12 300 29 2133 101 0 29 chr12 136079999 136080306 -8202183 - AluSg SINE Alu -12 298 1 449 339 6 11 chr12 136081638 136081818 -8200671 + (CA)n Simple_repeat Simple_repeat 1 179 0 229 314 0 0 chr12 136081848 136081918 -8200571 + (CA)n Simple_repeat Simple_repeat 1 70 0 2397 146 8 3 chr12 136082897 136083259 -8199230 + THE1B LTR MaLR 1 364 0 674 297 0 36 chr12 136083361 136083583 -8198906 + L1MA9 LINE L1 6068 6281 -31 285 344 71 0 chr12 136084144 136084298 -8198191 + L1MC/D LINE L1 5595 5759 -2049 1845 167 7 0 chr12 136084651 136084956 -8197533 - AluJo SINE Alu -5 307 1 1430 160 35 69 chr12 136085110 136085232 -8197257 + AluJo SINE Alu 6 131 -181 2137 112 0 7 chr12 136085232 136085528 -8196961 - AluSx SINE Alu -16 296 3 1430 160 35 69 chr12 136085528 136085723 -8196766 + AluJo SINE Alu 131 312 0 2229 90 0 3 chr12 136085874 136086173 -8196316 + AluSg SINE Alu 1 298 -12 303 327 36 0 chr12 136087745 136087855 -8194634 - L1MC4a LINE L1 -1905 5903 5790 2106 125 16 70 chr12 136088398 136088740 -8193749 + THE1B LTR MaLR 1 321 -43 2152 108 0 3 chr12 136088740 136089035 -8193454 - AluSc SINE Alu -15 294 1 2106 125 16 70 chr12 136089035 136089077 -8193412 + THE1B LTR MaLR 321 364 0 1882 117 24 3 chr12 136091063 136091183 -8191306 + AluSg SINE Alu 1 117 -193 549 0 0 0 chr12 136091183 136091244 -8191245 + (CA)n Simple_repeat Simple_repeat 2 62 0 1882 117 24 3 chr12 136091244 136091414 -8191075 + AluSg SINE Alu 117 297 -13 1242 283 99 34 chr12 136091456 136091989 -8190500 + L1MC4 LINE L1 7374 7941 -101 1542 153 61 0 chr12 136092021 136092303 -8190186 + AluJo SINE Alu 4 301 0 255 272 126 10 chr12 136092310 136092413 -8190076 + L1MC4 LINE L1 7919 8033 -9 1369 176 3 93 chr12 136092447 136092771 -8189718 + AluSx SINE Alu 11 305 -7 2380 78 7 0 chr12 136093072 136093381 -8189108 + AluY SINE Alu 1 311 0 2248 113 3 0 chr12 136093387 136093698 -8188791 + AluSx SINE Alu 1 312 0 800 337 118 35 chr12 136094172 136094852 -8187637 - ERVL LTR ERVL -4108 1585 811 451 300 40 40 chr12 136094916 136095040 -8187449 - ERVL LTR ERVL -4978 676 550 2222 107 0 0 chr12 136095040 136095338 -8187151 - AluSx SINE Alu -14 298 1 451 300 40 40 chr12 136095338 136095436 -8187053 - ERVL LTR ERVL -5103 551 454 323 254 54 88 chr12 136095889 136095974 -8186515 - LTR50 LTR ERVL 0 795 709 1767 137 67 0 chr12 136095974 136096258 -8186231 + AluJo SINE Alu 2 304 -8 2001 133 13 0 chr12 136096264 136096541 -8185948 + AluSx SINE Alu 1 284 -28 303 28 0 0 chr12 136096541 136096577 -8185912 + (CA)n Simple_repeat Simple_repeat 1 36 0 2001 133 13 0 chr12 136096577 136096601 -8185888 + AluSx SINE Alu 284 306 -6 323 254 54 88 chr12 136096601 136096692 -8185797 - LTR50 LTR ERVL -91 704 619 2178 113 0 0 chr12 136096692 136096985 -8185504 + AluSg SINE Alu 2 294 -16 323 254 54 88 chr12 136096985 136097040 -8185449 - LTR50 LTR ERVL -176 619 564 557 242 7 13 chr12 136097510 136097663 -8184826 - LTR41 LTR ERVL -621 152 1 279 0 0 0 chr12 136097752 136097783 -8184706 + (CA)n Simple_repeat Simple_repeat 2 32 0 1066 129 0 6 chr12 136097783 136097953 -8184536 + AluSg/x SINE Alu 131 299 -13 1242 283 99 34 chr12 136097995 136098528 -8183961 + L1MC4 LINE L1 7374 7941 -101 1558 149 61 0 chr12 136098560 136098842 -8183647 + AluJo SINE Alu 4 301 0 255 272 126 10 chr12 136098849 136098952 -8183537 + L1MC4 LINE L1 7919 8033 -9 1254 179 3 100 chr12 136098986 136099314 -8183175 + AluSx SINE Alu 11 309 0 1040 199 45 44 chr12 136099427 136099761 -8182728 + MLT1B LTR MaLR 1 384 -6 514 228 35 81 chr12 136099846 136099990 -8182499 + MER112 DNA MER1_type 1 129 -131 1751 172 7 7 chr12 136099990 136100293 -8182196 - AluSx SINE Alu -8 304 2 514 228 35 81 chr12 136100293 136100407 -8182082 + MER112 DNA MER1_type 129 247 -13 468 209 65 43 chr12 136102697 136102761 -8179728 - MIR SINE MIR -42 220 159 2303 166 34 12 chr12 136102761 136103178 -8179311 + MSTB LTR MaLR 1 426 0 468 209 65 43 chr12 136103178 136103252 -8179237 - MIR SINE MIR -103 159 79 2548 55 0 0 chr12 136103955 136104266 -8178223 - AluY SINE Alu 0 311 1 305 311 56 19 chr12 136104412 136104573 -8177916 + (CATG)n Simple_repeat Simple_repeat 1 167 0 345 307 140 13 chr12 136104650 136104800 -8177689 + MIR3 SINE MIR 29 197 -11 1066 129 18 0 chr12 136105330 136105500 -8176989 + AluJo SINE Alu 122 294 -18 1703 120 78 0 chr12 136105623 136105881 -8176608 + AluSx SINE Alu 1 278 -34 2271 95 0 0 chr12 136105914 136106210 -8176279 + AluSg SINE Alu 7 302 -8 475 200 255 7 chr12 136107198 136107343 -8175146 + MER5A DNA MER1_type 9 189 0 201 289 211 22 chr12 136107432 136107522 -8174967 - L2 LINE L2 -15 3257 3151 317 136 0 0 chr12 136107722 136107766 -8174723 + Alu SINE Alu 4 47 -256 917 147 0 0 chr12 136107810 136107953 -8174536 + FRAM SINE Alu 18 160 -16 1802 136 39 0 chr12 136107997 136108295 -8174194 + AluSx SINE Alu 1 312 0 454 321 8 0 chr12 136108316 136108447 -8174042 - MIR SINE MIR -15 247 116 335 336 101 13 chr12 136108458 136108607 -8173882 + L1M4 LINE L1 3297 3458 -2688 323 302 95 16 chr12 136108765 136108954 -8173535 + L1M4 LINE L1 3847 4050 -2096 326 331 49 7 chr12 136109089 136109222 -8173267 + L1M4 LINE L1 4231 4372 -1774 2136 116 6 3 chr12 136109222 136109533 -8172956 + AluSx SINE Alu 1 312 0 1382 163 143 4 chr12 136109567 136109825 -8172664 - AluJb SINE Alu -8 294 1 470 340 62 33 chr12 136111627 136111726 -8170763 - MIR SINE MIR -4 258 163 2073 80 62 0 chr12 136111726 136112001 -8170488 + AluY SINE Alu 1 292 -19 470 340 62 33 chr12 136112001 136112145 -8170344 - MIR SINE MIR -99 163 8 396 55 0 0 chr12 136112937 136112992 -8169497 + (CA)n Simple_repeat Simple_repeat 1 55 0 402 322 89 41 chr12 136116780 136117218 -8165271 + L2 LINE L2 2841 3299 -14 506 172 45 0 chr12 136117228 136117385 -8165104 + (TGGA)n Simple_repeat Simple_repeat 3 166 0 184 167 42 0 chr12 136117410 136117458 -8165031 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 2652 45 3 6 chr12 136118953 136119264 -8163225 - AluY SINE Alu -1 310 1 2306 92 20 26 chr12 136119285 136119633 -8162856 - MER1A DNA MER1_type 0 529 184 2280 110 0 17 chr12 136119633 136119934 -8162555 - AluSx SINE Alu -16 296 1 2419 105 0 0 chr12 136119937 136120243 -8162246 - AluSx SINE Alu -6 306 1 701 136 0 0 chr12 136120279 136120389 -8162100 - FLAM_C SINE Alu -32 111 2 890 150 0 0 chr12 136120474 136120607 -8161882 + AluSq/x SINE Alu 2 134 -178 1689 179 0 24 chr12 136120707 136120806 -8161683 + AluJo SINE Alu 16 116 -196 1685 167 46 35 chr12 136120806 136121177 -8161312 - THE1C LTR MaLR 0 375 1 1689 179 0 24 chr12 136121177 136121373 -8161116 + AluJo SINE Alu 116 304 -8 560 165 25 25 chr12 136121378 136121499 -8160990 + MER5A DNA MER1_type 68 188 -1 346 300 188 40 chr12 136121553 136121785 -8160704 + L1MC4 LINE L1 7498 7694 -348 1973 96 52 4 chr12 136121785 136122088 -8160401 - AluSx SINE Alu 0 316 1 346 300 188 40 chr12 136122088 136122227 -8160262 + L1MC4 LINE L1 7694 7925 -117 880 229 263 22 chr12 136122386 136122797 -8159692 - MLT1J LTR MaLR -1 510 1 886 206 0 24 chr12 136122828 136122998 -8159491 - AluJb SINE Alu -21 291 126 1454 199 4 0 chr12 136123066 136123322 -8159167 + AluSx SINE Alu 1 257 -55 382 226 81 24 chr12 136123349 136123473 -8159016 - THE1C LTR MaLR -36 339 209 2402 104 0 3 chr12 136124592 136124900 -8157589 + AluJo SINE Alu 1 307 -5 422 237 225 17 chr12 136124932 136125168 -8157321 - L2 LINE L2 -2 3311 3027 189 241 13 51 chr12 136126162 136126241 -8156248 + L2 LINE L2 2924 2999 -273 291 292 18 35 chr12 136126385 136126498 -8155991 - L2 LINE L2 -1 3271 3161 2177 106 17 3 chr12 136126955 136127247 -8155242 + AluSx SINE Alu 1 296 -16 2302 60 0 0 chr12 136127437 136127702 -8154787 - AluY SINE Alu -12 299 35 29 0 0 0 chr12 136127710 136127739 -8154750 + AT_rich Low_complexity Low_complexity 1 29 0 1573 174 0 43 chr12 136127749 136128025 -8154464 + AluJo SINE Alu 1 264 -48 2398 78 3 0 chr12 136129073 136129369 -8153120 + AluY SINE Alu 1 297 -14 2308 88 30 0 chr12 136129373 136129668 -8152821 + AluSq SINE Alu 1 304 -9 2389 95 0 0 chr12 136129693 136129989 -8152500 + AluSc SINE Alu 2 297 -12 2186 139 0 0 chr12 136130001 136130304 -8152185 + AluSx SINE Alu 1 303 -9 394 139 0 59 chr12 136130306 136130407 -8152082 + L1MB2 LINE L1 6073 6167 -4 1917 150 18 0 chr12 136130409 136130695 -8151794 - AluJo SINE Alu -21 291 1 207 0 0 0 chr12 136130714 136130737 -8151752 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 700 154 217 40 chr12 136131340 136131515 -8150974 + MIR SINE MIR 19 224 -38 2349 99 0 10 chr12 136131737 136132049 -8150440 + AluSg1 SINE Alu 1 309 0 690 107 0 36 chr12 136132695 136132807 -8149682 + FRAM SINE Alu 53 160 -16 2123 130 10 0 chr12 136132809 136133109 -8149380 + AluSq SINE Alu 2 304 -9 374 202 146 0 chr12 136133425 136133514 -8148975 - U6 snRNA snRNA -5 102 1 1318 215 173 33 chr12 136133582 136134034 -8148455 + MLT1F LTR MaLR 28 542 0 540 285 24 18 chr12 136134159 136134324 -8148165 + MIR SINE MIR 97 262 0 958 168 0 0 chr12 136134444 136134593 -8147896 - FRAM SINE Alu -8 168 20 2182 137 60 8 chr12 136134639 136135005 -8147484 - LTR32 LTR ERVL 0 471 87 2408 73 0 10 chr12 136135824 136136124 -8146365 + AluSg SINE Alu 1 297 -13 321 240 45 91 chr12 136136371 136136494 -8145995 - Charlie8 DNA MER1_type -103 238 122 2005 142 0 7 chr12 136136494 136136790 -8145699 - AluJb SINE Alu -18 294 1 321 240 45 91 chr12 136136790 136136820 -8145669 - Charlie8 DNA MER1_type -219 122 92 557 269 42 6 chr12 136137157 136137324 -8145165 - MIR SINE MIR -48 214 42 2262 93 21 0 chr12 136137324 136137615 -8144874 + AluSq SINE Alu 1 297 -16 186 314 76 42 chr12 136138057 136138175 -8144314 - L2 LINE L2 -560 2754 2633 2484 64 10 0 chr12 136138409 136138707 -8143782 + AluSp SINE Alu 1 301 -12 204 137 41 82 chr12 136139767 136139840 -8142649 + (CCCCG)n Simple_repeat Simple_repeat 3 72 0 239 337 53 0 chr12 136140053 136140148 -8142341 - L2 LINE L2 -5 3308 3209 519 126 42 11 chr12 136140290 136140385 -8142104 + MER4A LTR ERV1 1 98 -566 453 144 42 5 chr12 136140385 136140503 -8141986 + MER4A LTR ERV1 261 441 -223 2090 83 24 42 chr12 136140517 136140684 -8141805 - AluSx SINE Alu -15 297 136 2330 90 3 31 chr12 136140684 136141006 -8141483 - AluSp SINE Alu 0 313 1 2090 83 24 42 chr12 136141006 136141127 -8141362 - AluSx SINE Alu -176 136 14 2945 94 85 82 chr12 136141128 136141450 -8141039 + MER41-int LTR ERV1 143 463 -4552 3898 110 2 0 chr12 136141450 136142003 -8140486 + MER41A LTR ERV1 1 554 0 2945 94 85 82 chr12 136142003 136142216 -8140273 + MER41-int LTR ERV1 463 674 -4341 387 0 0 0 chr12 136142216 136142259 -8140230 + (CA)n Simple_repeat Simple_repeat 1 43 0 2945 94 85 82 chr12 136142259 136142851 -8139638 + MER41-int LTR ERV1 674 782 -4233 2344 91 3 31 chr12 136142851 136143171 -8139318 + AluY SINE Alu 1 311 0 2945 94 85 82 chr12 136143171 136143295 -8139194 + MER41-int LTR ERV1 782 904 -4111 2262 114 3 0 chr12 136143297 136143603 -8138886 + AluSp SINE Alu 1 307 -6 3929 145 50 12 chr12 136143617 136144374 -8138115 + MER41-int LTR ERV1 4588 5373 -573 556 156 25 33 chr12 136144678 136144800 -8137689 - MER5A DNA MER1_type -1 188 68 1985 154 0 22 chr12 136144805 136145001 -8137488 - AluJo SINE Alu -8 304 116 1651 170 46 35 chr12 136145001 136145372 -8137117 + THE1C LTR MaLR 1 375 0 1985 154 0 22 chr12 136145372 136145486 -8137003 - AluJo SINE Alu -196 116 1 435 241 44 32 chr12 136145842 136146000 -8136489 - Charlie1 DNA MER1_type 0 2761 2602 1714 163 25 4 chr12 136146005 136146303 -8136186 - AluJo SINE Alu 0 304 1 442 226 58 67 chr12 136146314 136146366 -8136123 - Charlie1 DNA MER1_type -132 2629 2578 1755 141 47 36 chr12 136146366 136146661 -8135828 + MLT1A1 LTR MaLR 1 302 -63 2181 89 58 10 chr12 136146661 136146953 -8135536 + AluSx SINE Alu 1 306 -6 1755 141 47 36 chr12 136146953 136147018 -8135471 + MLT1A1 LTR MaLR 302 365 0 442 226 58 67 chr12 136147018 136147173 -8135316 - Charlie1 DNA MER1_type -183 2578 2424 523 194 0 88 chr12 136147195 136147365 -8135124 - MER33 DNA MER1_type -22 341 187 274 146 0 21 chr12 136147440 136147488 -8135001 - Charlie1 DNA MER1_type -2708 53 7 1108 114 7 0 chr12 136147749 136147898 -8134591 + AluSq/x SINE Alu 1 150 -162 388 204 21 0 chr12 136148011 136148104 -8134385 - MER33 DNA MER1_type -7 317 223 2231 96 0 7 chr12 136148150 136148430 -8134059 - AluSg SINE Alu -32 278 1 2017 141 0 44 chr12 136148430 136148614 -8133875 - AluJb SINE Alu -4 308 142 2174 101 3 23 chr12 136148614 136148921 -8133568 - AluSg SINE Alu -5 305 5 2017 141 0 44 chr12 136148921 136149056 -8133433 - AluJb SINE Alu -170 142 3 594 199 108 6 chr12 136149056 136149232 -8133257 - MER33 DNA MER1_type -88 236 43 273 250 0 14 chr12 136149460 136149532 -8132957 + MIR SINE MIR 29 99 -163 1732 196 40 27 chr12 136149868 136150272 -8132217 + MLT1C LTR MaLR 1 409 -58 1286 134 0 0 chr12 136150272 136150451 -8132038 - AluSg/x SINE Alu -1 311 133 1192 138 11 32 chr12 136150556 136150745 -8131744 - AluJo SINE Alu -127 185 1 2355 81 10 3 chr12 136150757 136151052 -8131437 - AluSc SINE Alu -12 297 1 1177 83 7 0 chr12 136151405 136151550 -8130939 + AluSq/x SINE Alu 1 146 -167 658 103 65 0 chr12 136151551 136151658 -8130831 + AluSc SINE Alu 194 307 -2 643 157 229 0 chr12 136151739 136151892 -8130597 + MER53 DNA DNA 1 188 -1 203 88 29 0 chr12 136152253 136152287 -8130202 + (CA)n Simple_repeat Simple_repeat 1 35 0 567 135 0 0 chr12 136153737 136153826 -8128663 - AluS SINE Alu -220 93 5 557 136 40 140 chr12 136153832 136153886 -8128603 + Charlie1 DNA MER1_type 2537 2595 -166 2185 139 0 0 chr12 136153886 136154218 -8128271 - AluSx SINE Alu 0 312 1 2401 82 0 35 chr12 136154223 136154542 -8127947 - AluY SINE Alu -2 309 2 557 136 40 140 chr12 136154542 136154709 -8127780 + Charlie1 DNA MER1_type 2599 2741 -20 1425 221 28 3 chr12 136154896 136155181 -8127308 - AluJo SINE Alu -20 292 1 402 232 0 26 chr12 136155235 136155335 -8127154 - L1ME LINE L1 -307 5814 5732 974 133 0 0 chr12 136155335 136155493 -8126996 - L1PA15 LINE L1 -5 6160 6003 402 232 0 26 chr12 136155493 136155523 -8126966 - L1ME LINE L1 -389 5732 5703 700 215 0 58 chr12 136155665 136155726 -8126763 - AluJo/FRAM SINE Alu -4 298 235 2256 104 0 17 chr12 136155726 136156024 -8126465 - AluSq SINE Alu -20 293 1 700 215 0 58 chr12 136156024 136156134 -8126355 - AluJo/FRAM SINE Alu -67 235 137 1516 161 66 59 chr12 136156630 136156763 -8125726 + AluJo SINE Alu 1 132 -180 2287 97 7 0 chr12 136156763 136157063 -8125426 + AluSx SINE Alu 1 302 -10 1516 161 66 59 chr12 136157063 136157234 -8125255 + AluJo SINE Alu 132 307 -5 2294 91 6 31 chr12 136157318 136157636 -8124853 - AluSg SINE Alu 0 310 1 2019 151 3 3 chr12 136157638 136157937 -8124552 - AluSx SINE Alu -13 299 1 719 164 0 9 chr12 136157967 136158083 -8124406 - FLAM_C SINE Alu -17 126 12 1590 92 9 40 chr12 136158250 136158478 -8124011 + AluSg/x SINE Alu 73 293 -17 1793 170 21 0 chr12 136158591 136158926 -8123563 - MLT1B LTR MaLR -45 345 4 232 266 221 0 chr12 136159335 136159448 -8123041 - MIR SINE MIR -19 243 106 2175 129 0 0 chr12 136159608 136159888 -8122601 + AluSx SINE Alu 3 282 -30 1880 178 3 0 chr12 136159957 136160250 -8122239 + AluSx SINE Alu 1 294 -18 993 168 6 6 chr12 136160262 136160423 -8122066 + FRAM SINE Alu 1 160 -16 364 231 50 83 chr12 136160560 136160681 -8121808 - MIR SINE MIR -90 118 2 2174 102 20 10 chr12 136160796 136161101 -8121388 + AluSc SINE Alu 1 308 -1 2365 116 0 0 chr12 136161113 136161416 -8121073 + AluSx SINE Alu 3 305 -7 252 254 225 7 chr12 136161688 136161830 -8120659 + L1MC/D LINE L1 5713 5885 -1923 1628 157 34 0 chr12 136162213 136162481 -8120008 + AluJo SINE Alu 6 282 -30 1903 157 6 22 chr12 136163095 136163408 -8119081 + AluJo SINE Alu 1 308 -4 1054 201 25 1 chr12 136164654 136165018 -8117471 - MER68 LTR ERV1 -8 554 146 1986 150 24 0 chr12 136165074 136165368 -8117121 - AluJb SINE Alu -11 301 1 1292 221 65 35 chr12 136165422 136165820 -8116669 + MLT1C LTR MaLR 4 413 -54 894 149 0 0 chr12 136165928 136166049 -8116440 + AluSg/x SINE Alu 135 255 -55 1403 149 88 58 chr12 136166076 136166405 -8116084 - THE1C LTR MaLR -36 339 1 2373 83 7 0 chr12 136166521 136166810 -8115679 + AluSp SINE Alu 1 291 -22 2323 97 3 3 chr12 136168673 136168971 -8113518 + AluSx SINE Alu 1 298 -14 1878 107 0 0 chr12 136169391 136169635 -8112854 + AluSq SINE Alu 1 244 -69 613 118 0 12 chr12 136170981 136171066 -8111423 - AluJ/FLAM SINE Alu -227 85 2 360 103 0 0 chr12 136171172 136171230 -8111259 + (TA)n Simple_repeat Simple_repeat 2 59 0 2276 89 3 0 chr12 136171230 136171521 -8110968 - AluY SINE Alu -19 292 1 1992 125 39 0 chr12 136171581 136171861 -8110628 + AluSg SINE Alu 1 291 -19 211 182 0 45 chr12 136172267 136172311 -8110178 + L2 LINE L2 3272 3313 0 196 312 40 16 chr12 136173000 136173125 -8109364 + L2 LINE L2 3185 3312 -1 25 23 0 23 chr12 136173273 136173303 -8109186 + AT_rich Low_complexity Low_complexity 1 31 -11 2413 67 3 3 chr12 136173303 136173602 -8108887 - AluSc SINE Alu -10 299 1 25 23 0 23 chr12 136173602 136173614 -8108875 + AT_rich Low_complexity Low_complexity 31 42 0 1890 90 0 22 chr12 136174459 136174726 -8107763 + AluSq SINE Alu 51 311 -2 25 0 0 0 chr12 136174936 136174961 -8107528 + AT_rich Low_complexity Low_complexity 1 25 0 2122 36 8 0 chr12 136174964 136175212 -8107277 - L1PA3 LINE L1 -5 6150 5901 180 0 0 0 chr12 136175637 136175657 -8106832 + (T)n Simple_repeat Simple_repeat 1 20 0 2369 102 0 0 chr12 136175676 136175979 -8106510 + AluSx SINE Alu 1 303 -9 1009 102 0 0 chr12 136175997 136176125 -8106364 + AluSq/x SINE Alu 1 128 -185 420 97 32 0 chr12 136176138 136176200 -8106289 + Alu SINE Alu 238 301 -11 2230 64 6 88 chr12 136176200 136176530 -8105959 + AluY SINE Alu 1 303 -8 2063 115 3 39 chr12 136177096 136177401 -8105088 - AluSx SINE Alu -18 294 1 2338 109 3 0 chr12 136177486 136177790 -8104699 - AluSq SINE Alu -8 305 1 1546 85 20 0 chr12 136178041 136178240 -8104249 + AluSg SINE Alu 1 203 -107 365 152 25 25 chr12 136178566 136178645 -8103844 + MER4A LTR ERV1 1 79 -585 970 190 0 0 chr12 136178737 136178900 -8103589 + AluSg/x SINE Alu 137 299 -13 751 237 26 28 chr12 136178914 136179186 -8103303 + MER4C LTR ERV1 276 465 0 2205 128 0 3 chr12 136179222 136179527 -8102962 - AluSx SINE Alu 0 312 9 2371 96 3 0 chr12 136179535 136179837 -8102652 - AluSp SINE Alu -10 303 1 2377 225 48 44 chr12 136179869 136180075 -8102414 - L1ME1 LINE L1 -5 6161 5957 2333 95 0 13 chr12 136180075 136180379 -8102110 - AluSg SINE Alu -10 300 1 2377 225 48 44 chr12 136180379 136180880 -8101609 - L1ME1 LINE L1 -209 5957 5451 1761 172 34 7 chr12 136180881 136181177 -8101312 - AluJb SINE Alu -8 304 1 2324 100 7 3 chr12 136181545 136181854 -8100635 - AluSg SINE Alu 0 310 1 27 0 0 0 chr12 136181854 136181881 -8100608 + AT_rich Low_complexity Low_complexity 1 27 0 301 89 22 10 chr12 136181881 136181944 -8100545 - AluSg/x SINE Alu -177 123 80 1551 204 70 22 chr12 136182155 136182512 -8099977 + MLT1A2 LTR MaLR 1 374 0 2041 138 7 0 chr12 136182553 136182849 -8099640 - AluSq SINE Alu -15 298 1 2448 96 0 6 chr12 136183020 136183332 -8099157 + AluSg SINE Alu 1 310 0 1463 160 145 4 chr12 136183501 136183763 -8098726 + AluJb SINE Alu 1 299 -13 2450 97 3 0 chr12 136183975 136184285 -8098204 + AluSp SINE Alu 2 312 -1 2283 92 0 0 chr12 136184310 136184594 -8097895 + AluSx SINE Alu 13 296 -16 328 255 28 66 chr12 136184618 136184724 -8097765 - MIR SINE MIR -140 122 21 189 147 0 0 chr12 136185195 136185229 -8097260 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 813 189 11 47 chr12 136185282 136185472 -8097017 + Charlie1b DNA MER1_type 84 266 -257 1391 95 0 0 chr12 136185472 136185640 -8096849 + AluSc SINE Alu 1 168 -141 891 118 0 0 chr12 136185876 136185995 -8096494 - AluJb SINE Alu -193 119 1 236 133 0 22 chr12 136186478 136186523 -8095966 + L2 LINE L2 2492 2535 -779 28 29 0 0 chr12 136186550 136186585 -8095904 + AT_rich Low_complexity Low_complexity 1 35 0 452 130 26 0 chr12 136186788 136186865 -8095624 - AluSp/q SINE Alu -12 301 223 2431 84 7 0 chr12 136186899 136187196 -8095293 - AluSq SINE Alu -14 299 1 2362 97 0 3 chr12 136187208 136187519 -8094970 - AluSg SINE Alu 0 310 1 443 242 42 42 chr12 136187543 136187708 -8094781 + L2 LINE L2 2646 2810 -504 475 254 46 15 chr12 136187737 136187867 -8094622 + L2 LINE L2 2925 3058 -255 1597 132 0 0 chr12 136187867 136188094 -8094395 - AluSq SINE Alu -5 308 82 1928 114 0 0 chr12 136188817 136189071 -8093418 - AluSq SINE Alu -11 302 49 466 214 16 16 chr12 136189088 136189214 -8093275 + Charlie2a DNA MER1_type 853 978 -1884 651 97 0 11 chr12 136189683 136189776 -8092713 + AluY SINE Alu 205 296 -15 194 313 8 86 chr12 136190025 136190153 -8092336 + L2 LINE L2 3146 3263 -9 * 259 337 119 0 chr12 136190136 136190237 -8092252 - L2 LINE L2 -12 3260 3148 1161 155 0 21 chr12 136190494 136190688 -8091801 + AluJo SINE Alu 116 305 -7 855 255 150 11 chr12 136190813 136191348 -8091141 + L2 LINE L2 2524 3140 -173 2367 112 0 10 chr12 136191348 136191653 -8090836 - AluSx SINE Alu -9 303 2 1418 144 22 81 chr12 136191706 136192073 -8090416 - MER4A LTR ERV1 0 664 261 574 152 0 10 chr12 136192073 136192172 -8090317 - MER4A LTR ERV1 -566 98 1 7075 90 46 26 chr12 136192180 136192235 -8090254 - MER4A-int LTR ERV1 -2 6596 6544 2535 62 13 0 chr12 136192235 136192542 -8089947 + AluY SINE Alu 1 311 0 7075 90 46 26 chr12 136192542 136193615 -8088874 - MER4A-int LTR ERV1 -54 6544 5445 484 313 84 16 chr12 136193795 136194223 -8088266 + L1ME4a LINE L1 5610 6066 -55 423 116 14 0 chr12 136194426 136194495 -8087994 + MLT2B3 LTR ERVL 2 71 -483 1745 215 79 10 chr12 136194592 136194996 -8087493 + MLT2B3 LTR ERVL 75 506 -48 852 86 0 17 chr12 136195032 136195148 -8087341 - AluSq/x SINE Alu -177 135 22 464 277 44 38 chr12 136195777 136195926 -8086563 + MIR SINE MIR 10 162 -46 2010 184 36 16 chr12 136195941 136196380 -8086109 + L1MB5 LINE L1 5649 6096 -78 226 111 0 0 chr12 136196480 136196516 -8085973 + L1MB2 LINE L1 6134 6169 -2 370 194 31 0 chr12 136248051 136248149 -8034340 - MLT1C LTR MaLR -293 174 74 486 299 151 24 chr12 136248617 136249029 -8033460 + L2 LINE L2 2850 3313 0 250 219 123 0 chr12 136249384 136249457 -8033032 + L1MB4 LINE L1 6098 6179 -1 254 316 36 26 chr12 136250253 136250446 -8032043 - L1ME3A LINE L1 -223 5947 5753 201 281 0 0 chr12 136250786 136250843 -8031646 + G-rich Low_complexity Low_complexity 1 57 0 2252 84 0 0 chr12 136251138 136251412 -8031077 + AluSg SINE Alu 26 299 -11 321 314 40 16 chr12 136251458 136251582 -8030907 - L1ME3A LINE L1 -2035 5773 5647 864 198 73 0 chr12 136251590 136251767 -8030722 - MER20 DNA MER1_type -24 195 6 715 280 32 0 chr12 136252261 136252447 -8030042 - MIR SINE MIR -38 224 33 802 318 35 8 chr12 136252511 136252766 -8029723 - MIR SINE MIR 0 262 1 708 321 55 10 chr12 136253456 136253767 -8028722 - L1ME3A LINE L1 -223 5947 5623 293 218 218 0 chr12 136253799 136253886 -8028603 + MLT1E3 LTR MaLR 47 152 -502 1376 224 18 21 chr12 136253951 136254290 -8028199 + MLT1A1 LTR MaLR 25 362 -3 * 1806 222 23 45 chr12 136254290 136254704 -8027785 + MLT1E3 LTR MaLR 157 560 -64 806 166 66 0 chr12 136254704 136254855 -8027634 - L1MB3 LINE L1 -7 6176 6016 1806 222 23 45 chr12 136254855 136254919 -8027570 + MLT1E3 LTR MaLR 560 624 0 1021 276 91 24 chr12 136255420 136255837 -8026652 - MLT1K LTR MaLR 0 588 144 3040 114 22 0 chr12 136256230 136256679 -8025810 - L1PA16 LINE L1 -2 6164 5706 1294 226 159 56 chr12 136256682 136257217 -8025272 + MLT1G LTR MaLR 1 590 0 557 226 8 80 chr12 136257279 136257476 -8025013 + L1ME LINE L1 5592 5781 -340 449 239 58 45 chr12 136257495 136257650 -8024839 - MIR SINE MIR -30 232 76 21 57 0 0 chr12 136257759 136257794 -8024695 + AT_rich Low_complexity Low_complexity 1 35 0 372 71 0 0 chr12 136258447 136258503 -8023986 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 350 363 112 17 chr12 136258643 136258822 -8023667 + MIR SINE MIR 34 229 -33 402 248 44 22 chr12 136258867 136259004 -8023485 - L1MCa LINE L1 -4109 2317 2178 733 289 56 55 chr12 136259004 136259650 -8022839 + L2 LINE L2 2688 3313 0 353 276 13 0 chr12 136260454 136260530 -8021959 - L2 LINE L2 -4 3268 3192 401 242 55 121 chr12 136260750 136260903 -8021586 + L2 LINE L2 1552 1684 -1630 1743 154 21 11 chr12 136260903 136261218 -8021271 + AluJo SINE Alu 1 318 0 401 242 55 121 chr12 136261218 136261319 -8021170 + L2 LINE L2 1684 1790 -1524 2080 122 0 0 chr12 136261324 136261612 -8020877 + AluSx SINE Alu 1 288 -24 192 125 0 0 chr12 136261651 136261683 -8020806 + (T)n Simple_repeat Simple_repeat 1 32 0 211 143 16 111 chr12 136261795 136261858 -8020631 + MIR3 SINE MIR 98 154 -54 249 316 13 0 chr12 136263942 136264021 -8018468 - L3 LINE CR1 -114 1463 1384 233 267 33 33 chr12 136264464 136264554 -8017935 + MER101B LTR ERV1 286 375 -195 331 182 15 0 chr12 136264760 136264826 -8017663 + MLT1K LTR MaLR 507 573 -15 350 262 76 0 chr12 136265657 136265802 -8016687 + LTR16A LTR ERVL 295 450 0 944 200 22 0 chr12 136266064 136266249 -8016240 - MER5A DNA MER1_type 0 189 1 239 303 0 0 chr12 136268312 136268388 -8014101 - Charlie8 DNA MER1_type 0 2417 2342 * 731 287 85 35 chr12 136268384 136268750 -8013739 - Charlie8 DNA MER1_type -1996 421 38 205 339 0 0 chr12 136268830 136268886 -8013603 - L3 LINE CR1 -11 1566 1511 339 304 136 19 chr12 136269552 136269766 -8012723 - L3 LINE CR1 -251 1326 1088 215 204 20 20 chr12 136270129 136270178 -8012311 - MIR SINE MIR -11 251 203 2014 154 3 0 chr12 136270311 136270610 -8011879 - AluJb SINE Alu -12 300 1 457 256 150 8 chr12 136270622 136270755 -8011734 - MIR SINE MIR -74 188 37 2021 147 30 0 chr12 136270884 136271183 -8011306 + AluJb SINE Alu 1 308 -4 2309 113 0 3 chr12 136271559 136271861 -8010628 - AluSq SINE Alu -12 301 1 521 114 38 0 chr12 136272104 136272209 -8010280 + CT-rich Low_complexity Low_complexity 2 110 0 27 0 0 0 chr12 136272572 136272599 -8009890 + AT_rich Low_complexity Low_complexity 1 27 0 943 178 76 10 chr12 136273314 136273511 -8008978 + MER58A DNA MER1_type 10 219 -5 568 86 0 12 chr12 136273549 136273630 -8008859 + MADE1 DNA Mariner 1 80 0 1575 184 25 0 chr12 136273913 136274191 -8008298 + AluJo SINE Alu 7 291 -21 1668 189 109 48 chr12 136274434 136274909 -8007580 + MLT1D LTR MaLR 1 504 -1 601 296 177 16 chr12 136274954 136275086 -8007403 - L2 LINE L2 -4 3309 3200 1706 232 96 34 chr12 136275086 136275646 -8006843 - MLT1G1 LTR MaLR 0 595 1 601 296 177 16 chr12 136275646 136275824 -8006665 - L2 LINE L2 -113 3200 2949 515 266 86 45 chr12 136275992 136276214 -8006275 + L2 LINE L2 3081 3311 -2 1321 200 100 0 chr12 136277244 136277514 -8004975 - AluJo SINE Alu -15 297 1 819 206 12 6 chr12 136277632 136277792 -8004697 + AluJb SINE Alu 122 282 -30 252 0 0 0 chr12 136277799 136277827 -8004662 + (TG)n Simple_repeat Simple_repeat 1 28 0 871 171 13 6 chr12 136278727 136278885 -8003604 - AluJo SINE Alu -32 280 122 956 178 0 76 chr12 136279003 136279188 -8003301 + AluJo SINE Alu 1 171 -141 851 271 82 51 chr12 136279219 136279673 -8002816 + Charlie8 DNA MER1_type 32 499 -1918 457 279 50 7 chr12 136280211 136280351 -8002138 + MIR SINE MIR 84 229 -33 205 267 50 17 chr12 136280355 136280415 -8002074 + L2 LINE L2 3215 3276 -37 262 286 71 0 chr12 136280431 136280515 -8001974 + L2 LINE L2 3223 3312 -1 2309 174 54 15 chr12 136280804 136281282 -8001207 - MLT1D LTR MaLR 0 505 9 471 246 165 75 chr12 136281754 136281784 -8000705 - L1ME3A LINE L1 0 6170 6144 1496 182 149 0 chr12 136281784 136282086 -8000403 - MER7A DNA MER2_type -1 345 1 471 246 165 75 chr12 136282086 136282097 -8000392 - L1ME3A LINE L1 -26 6144 6135 1862 157 36 18 chr12 136282097 136282429 -8000060 - MER44D DNA MER2_type -1 608 1 471 246 165 75 chr12 136282429 136282720 -7999769 - L1ME3A LINE L1 -35 6135 5807 449 208 161 78 chr12 136282728 136282822 -7999667 + MER58C DNA MER1_type 2 87 -2333 2100 119 16 10 chr12 136282822 136283125 -7999364 + AluSx SINE Alu 1 305 -7 449 208 161 78 chr12 136283125 136283222 -7999267 + MER58C DNA MER1_type 87 209 -6 286 231 0 0 chr12 136283883 136283948 -7998541 - Charlie8 DNA MER1_type -1928 489 425 415 313 129 29 chr12 136283988 136284406 -7998083 - MLT1J LTR MaLR -51 460 1 426 310 59 44 chr12 136284545 136284816 -7997673 - Charlie8 DNA MER1_type -2141 276 2 782 146 0 36 chr12 136284835 136284972 -7997517 + FLAM_C SINE Alu 2 133 0 1249 278 60 26 chr12 136285061 136285597 -7996892 + L1MC4a LINE L1 5508 6061 -1747 204 321 69 46 chr12 136285685 136285816 -7996673 - MIR3 SINE MIR -73 135 2 677 296 60 20 chr12 136286573 136286823 -7995666 - MLT1J LTR MaLR -14 497 238 530 160 170 0 chr12 136286824 136286918 -7995571 + FRAM SINE Alu 51 160 -16 225 184 0 0 chr12 136286920 136286958 -7995531 + MLT1J LTR MaLR 105 142 -369 333 0 0 0 chr12 136286988 136287025 -7995464 + (TG)n Simple_repeat Simple_repeat 2 38 0 954 134 24 43 chr12 136287030 136287194 -7995295 - AluJo SINE Alu -30 282 122 568 301 70 39 chr12 136287290 136287646 -7994843 - LTR16C LTR ERVL -4 487 121 292 280 80 73 chr12 136287776 136287823 -7994666 - MLT1J LTR MaLR -360 151 106 1484 152 3 88 chr12 136287823 136288119 -7994370 - AluJo SINE Alu -14 298 28 292 280 80 73 chr12 136288119 136288221 -7994268 - MLT1J LTR MaLR -405 106 1 1333 219 52 21 chr12 136288681 136289065 -7993424 + MER113 DNA MER1_type? 45 440 -81 2057 137 3 3 chr12 136290182 136290481 -7992008 + AluJb SINE Alu 1 299 -13 1814 130 8 0 chr12 136290586 136290839 -7991650 - AluSx SINE Alu -55 257 3 712 318 57 25 chr12 136290965 136291368 -7991121 - L1ME3 LINE L1 -206 5956 5541 706 175 0 40 chr12 136291699 136291825 -7990664 + FRAM SINE Alu 46 166 -10 257 269 119 45 chr12 136292237 136292371 -7990118 - L2 LINE L2 -2 3311 3168 1944 168 0 0 chr12 136292599 136292891 -7989598 - AluJo SINE Alu -20 292 1 1699 214 62 14 chr12 136293905 136294076 -7988413 + MLT1C LTR MaLR 6 167 -300 2298 93 10 0 chr12 136294076 136294366 -7988123 + AluSq SINE Alu 1 293 -20 1699 214 62 14 chr12 136294366 136294380 -7988109 + MLT1C LTR MaLR 167 179 -288 339 25 0 0 chr12 136294380 136294420 -7988069 + (CA)n Simple_repeat Simple_repeat 2 41 0 1699 214 62 14 chr12 136294420 136294672 -7987817 + MLT1C LTR MaLR 179 465 -2 345 282 65 0 chr12 136294688 136294812 -7987677 + Charlie8 DNA MER1_type 74 205 -2212 1052 260 0 0 chr12 136294987 136295210 -7987279 + MER58A DNA MER1_type 1 223 -1 324 200 0 0 chr12 136295211 136295281 -7987208 - Charlie8 DNA MER1_type -2273 144 75 376 364 6 12 chr12 136295616 136295781 -7986708 + L3b LINE CR1 1299 1462 -121 2069 239 50 22 chr12 136296132 136296672 -7985817 + MER68 LTR ERV1 1 555 -7 975 221 24 14 chr12 136296773 136296986 -7985503 - MIR SINE MIR -2 260 46 1044 114 17 11 chr12 136297075 136297251 -7985238 + L1MA5A LINE L1 6121 6297 0 526 248 81 0 chr12 136297306 136297467 -7985022 - MLT1I LTR MaLR 0 409 236 365 274 26 0 chr12 136297534 136297651 -7984838 - MLT1I LTR MaLR -275 134 15 378 238 88 72 chr12 136298535 136298624 -7983865 + MER117 DNA MER1_type 2 88 -109 2722 42 0 0 chr12 136298624 136298935 -7983554 + AluY SINE Alu 1 311 0 378 238 88 72 chr12 136298935 136299038 -7983451 + MER117 DNA MER1_type 88 197 0 276 328 16 16 chr12 136299524 136299649 -7982840 + MIR SINE MIR 21 145 -117 432 289 118 13 chr12 136300724 136300876 -7981613 - MIR3 SINE MIR -3 205 38 405 252 56 9 chr12 136301225 136301332 -7981157 - L2 LINE L2 0 3313 3202 370 298 47 51 chr12 136301395 136301630 -7980859 - L1MC4a LINE L1 -1923 5885 5652 407 248 108 0 chr12 136301633 136301762 -7980727 - MLT1K LTR MaLR -70 518 376 400 235 39 10 chr12 136301795 136301897 -7980592 - L2 LINE L2 -17 3296 3192 599 267 100 32 chr12 136301907 136302158 -7980331 - MLT1K LTR MaLR -244 344 77 832 258 30 2 chr12 136302960 136303169 -7979320 - MIR SINE MIR -48 214 3 286 282 78 17 chr12 136303178 136303330 -7979159 + MIR SINE MIR 18 184 -63 37 23 0 0 chr12 136303366 136303410 -7979079 + AT_rich Low_complexity Low_complexity 1 44 0 2041 147 15 158 chr12 136303410 136303584 -7978905 - MLT1D LTR MaLR -2 503 306 2167 118 3 0 chr12 136303584 136303880 -7978609 - AluSx SINE Alu -15 297 1 2041 147 15 158 chr12 136303880 136304292 -7978197 - MLT1D LTR MaLR -199 306 1 333 313 7 49 chr12 136304599 136304743 -7977746 - L1MC4a LINE L1 -1843 5965 5828 1387 103 0 31 chr12 136304745 136304939 -7977550 - AluSg/x SINE Alu -14 298 111 1908 137 23 3 chr12 136305044 136305343 -7977146 - AluSq SINE Alu -8 305 1 344 242 82 82 chr12 136305346 136305627 -7976862 + L1MC4a LINE L1 5706 5986 -1822 2370 222 87 31 chr12 136305816 136306063 -7976426 - L1ME1 LINE L1 -4 6162 5930 2975 71 0 3 chr12 136306063 136306428 -7976061 - THE1B LTR MaLR 0 364 1 2370 222 87 31 chr12 136306428 136306728 -7975761 - L1ME1 LINE L1 -236 5930 5561 2048 126 14 3 chr12 136306728 136307022 -7975467 + AluSq SINE Alu 11 307 -6 2370 222 87 31 chr12 136307022 136307213 -7975276 - L1ME1 LINE L1 -605 5561 5382 609 299 66 7 chr12 136307381 136307655 -7974834 - MER46C DNA MER2_type -43 295 6 1899 166 0 7 chr12 136308468 136308763 -7973726 - AluJb SINE Alu -19 293 1 367 251 128 67 chr12 136309204 136309461 -7973028 - MIR SINE MIR -1 261 3 3224 85 16 5 chr12 136309704 136310140 -7972349 + L1PA10 LINE L1 5728 6168 0 491 336 81 3 chr12 136310358 136310653 -7971836 - L1ME3A LINE L1 -232 5938 5621 581 206 103 7 chr12 136311210 136311356 -7971133 - MIR SINE MIR -22 240 81 563 286 104 6 chr12 136311594 136311928 -7970561 + L2 LINE L2 2710 3073 -240 442 202 32 0 chr12 136311933 136312027 -7970462 + L1MD3 LINE L1 7899 7995 0 207 348 79 28 chr12 136312047 136312225 -7970264 - L2 LINE L2 -397 2917 2731 379 318 191 0 chr12 136312242 136312431 -7970058 + L3 LINE CR1 1264 1488 -89 256 286 78 0 chr12 136312673 136312750 -7969739 + Charlie8 DNA MER1_type 194 276 -2141 808 254 16 11 chr12 136312789 136312974 -7969515 + MIR SINE MIR 51 236 -26 2386 103 0 0 chr12 136312997 136313299 -7969190 + AluSx SINE Alu 1 302 -10 735 215 80 6 chr12 136314587 136314750 -7967739 - MER45A DNA AcHobo 0 178 4 561 193 12 30 chr12 136314789 136314955 -7967534 + G-rich Low_complexity Low_complexity 2 164 0 383 239 18 0 chr12 136314977 136315090 -7967399 + GA-rich Low_complexity Low_complexity 2 116 0 1025 226 9 5 chr12 136315223 136315444 -7967045 - MIR SINE MIR -6 256 35 775 287 27 4 chr12 136316053 136316311 -7966178 + L1MC4 LINE L1 6812 7075 -967 760 231 7 0 chr12 136316336 136316479 -7966010 + Charlie8 DNA MER1_type 122 265 -2152 978 273 66 12 chr12 136316777 136317096 -7965393 - L2 LINE L2 -572 2742 2407 1044 175 16 16 chr12 136318208 136318391 -7964098 - AluJo SINE Alu -129 183 1 333 267 38 61 chr12 136318413 136318544 -7963945 - L2 LINE L2 -1635 1679 1552 353 276 13 0 chr12 136318764 136318840 -7963649 + L2 LINE L2 3192 3268 -4 733 289 56 55 chr12 136319643 136320289 -7962200 - L2 LINE L2 0 3313 2688 419 248 44 22 chr12 136320289 136320426 -7962063 + L1MCa LINE L1 2178 2317 -4109 350 363 112 17 chr12 136320471 136320650 -7961839 - MIR SINE MIR -33 229 34 372 71 0 0 chr12 136320790 136320846 -7961643 + (TCTCTG)n Simple_repeat Simple_repeat 3 58 0 21 57 0 0 chr12 136321499 136321534 -7960955 + AT_rich Low_complexity Low_complexity 1 35 0 448 239 58 45 chr12 136321643 136321798 -7960691 + MIR SINE MIR 76 232 -30 591 217 5 90 chr12 136321817 136322006 -7960483 - L1ME LINE L1 -340 5781 5609 1227 226 159 56 chr12 136322076 136322611 -7959878 - MLT1G LTR MaLR 0 590 1 2968 139 11 4 chr12 136322614 136323074 -7959415 + L1PA10 LINE L1 5706 6168 0 529 312 92 14 chr12 136323292 136323587 -7958902 - L1ME3A LINE L1 -232 5938 5621 573 206 103 7 chr12 136324144 136324290 -7958199 - MIR SINE MIR -22 240 81 541 285 105 6 chr12 136324528 136324859 -7957630 + L2 LINE L2 2710 3070 -243 198 348 79 28 chr12 136324969 136325147 -7957342 - L2 LINE L2 -397 2917 2731 376 318 191 0 chr12 136325164 136325353 -7957136 + L3 LINE CR1 1264 1488 -89 280 286 78 0 chr12 136325595 136325672 -7956817 + Charlie8 DNA MER1_type 194 276 -2141 806 254 16 11 chr12 136325711 136325896 -7956593 + MIR SINE MIR 51 236 -26 2237 103 0 0 chr12 136325919 136326221 -7956268 + AluSx SINE Alu 1 302 -10 711 215 80 6 chr12 136327509 136327672 -7954817 - MER45A DNA AcHobo 0 178 4 528 199 12 30 chr12 136327711 136327877 -7954612 + G-rich Low_complexity Low_complexity 2 164 0 197 192 0 19 chr12 136327900 136327952 -7954537 + GA-rich Low_complexity Low_complexity 3 53 0 995 235 9 5 chr12 136328145 136328366 -7954123 - MIR SINE MIR -6 256 35 823 287 27 4 chr12 136328975 136329233 -7953256 + L1MC4 LINE L1 6812 7075 -967 802 231 7 0 chr12 136329258 136329401 -7953088 + Charlie8 DNA MER1_type 122 265 -2152 986 270 66 12 chr12 136329699 136330018 -7952471 - L2 LINE L2 -572 2742 2407 403 265 27 20 chr12 136330838 136330981 -7951508 + MIR SINE MIR 7 149 -59 1367 238 160 4 chr12 136331220 136331670 -7950819 + MLT1G1 LTR MaLR 76 595 0 473 233 113 23 chr12 136331820 136331953 -7950536 + L2 LINE L2 3167 3311 -2 511 294 63 6 chr12 136332250 136332490 -7949999 + L1MC4a LINE L1 5684 5950 -292 657 297 62 34 chr12 136332804 136333238 -7949251 + L1MC4a LINE L1 5523 5964 -157 328 202 35 12 chr12 136333238 136333411 -7949078 + (TA)n Simple_repeat Simple_repeat 1 177 0 329 211 106 91 chr12 136333448 136333656 -7948833 + L1MCa LINE L1 1998 2208 -4218 228 222 32 0 chr12 136333656 136333719 -7948770 + (TA)n Simple_repeat Simple_repeat 1 65 0 581 230 7 30 chr12 136333901 136334036 -7948453 - MIR SINE MIR -40 222 91 2151 273 99 16 chr12 136334176 136335093 -7947396 - L2 LINE L2 -85 3228 2243 445 318 182 4 chr12 136335123 136335381 -7947108 + MER102b DNA MER1_type 11 314 -27 1085 152 0 0 chr12 136336585 136336750 -7945739 - FAM SINE Alu -6 169 5 4538 180 24 59 chr12 136336784 136337101 -7945388 + L1MB4 LINE L1 4912 5238 -942 1836 116 30 124 chr12 136337101 136337472 -7945017 + MER1B DNA MER1_type 1 336 -1 4538 180 24 59 chr12 136337472 136338331 -7944158 + L1MB4 LINE L1 5238 6020 -160 2231 78 3 7 chr12 136338331 136338624 -7943865 - AluSx SINE Alu -20 292 1 4538 180 24 59 chr12 136338624 136338777 -7943712 + L1MB4 LINE L1 6020 6177 -3 244 262 16 16 chr12 136338842 136338903 -7943586 + MIR SINE MIR 27 87 -175 544 277 15 0 chr12 136338929 136339059 -7943430 - MLT1H LTR MaLR -13 536 405 929 161 0 0 chr12 136339061 136339216 -7943273 - AluJb SINE Alu -17 295 141 2055 117 7 3 chr12 136339219 136339519 -7942970 - AluSg SINE Alu -9 301 1 273 75 0 0 chr12 136339521 136339561 -7942928 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2215 68 0 4 chr12 136339561 136339842 -7942647 - AluY SINE Alu -31 280 1 699 273 58 16 chr12 136339877 136340119 -7942370 - MLT1H LTR MaLR -207 342 91 236 321 24 0 chr12 136340223 136340307 -7942182 + MIR SINE MIR 176 261 -1 207 100 0 0 chr12 136340390 136340420 -7942069 + (TA)n Simple_repeat Simple_repeat 2 31 0 1138 240 23 16 chr12 136340604 136340862 -7941627 + MIR SINE MIR 2 261 -1 669 282 213 36 chr12 136341068 136341103 -7941386 - L2 LINE L2 -166 3147 3119 710 187 0 43 chr12 136341103 136341242 -7941247 + FLAM_C SINE Alu 1 133 0 669 282 213 36 chr12 136341242 136342287 -7940202 - L2 LINE L2 -194 3119 1803 574 150 124 18 chr12 136342287 136342400 -7940089 + FLAM_A SINE Alu 1 125 -8 2499 52 0 0 chr12 136342406 136342714 -7939775 + AluY SINE Alu 1 308 -3 545 294 71 14 chr12 136342836 136343047 -7939442 + L1ME3A LINE L1 5725 5947 -223 706 322 39 12 chr12 136343718 136343973 -7938516 + MIR SINE MIR 1 262 0 710 280 32 0 chr12 136344036 136344222 -7938267 + MIR SINE MIR 33 224 -38 463 202 32 0 chr12 136344660 136344754 -7937735 - L1MD3 LINE L1 0 7995 7899 191 280 0 0 chr12 136344759 136344809 -7937680 - L2 LINE L2 -240 3073 3024 186 43 0 0 chr12 136344810 136344833 -7937656 + (T)n Simple_repeat Simple_repeat 1 23 0 547 282 110 6 chr12 136347924 136348231 -7934258 - L2 LINE L2 -267 3046 2710 573 206 103 7 chr12 136348469 136348615 -7933874 + MIR SINE MIR 81 240 -22 529 312 92 14 chr12 136349172 136349467 -7933022 + L1ME3A LINE L1 5621 5938 -232 3212 85 16 5 chr12 136349684 136350120 -7932369 - L1PA10 LINE L1 0 6168 5728 327 249 132 72 chr12 136350363 136350620 -7931869 + MIR SINE MIR 3 261 -1 1771 163 0 7 chr12 136351063 136351358 -7931131 + AluJb SINE Alu 1 293 -19 636 288 73 15 chr12 136352171 136352445 -7930044 + MER46C DNA MER2_type 6 295 -43 2523 223 87 31 chr12 136352613 136352804 -7929685 + L1ME1 LINE L1 5382 5561 -605 1935 119 14 3 chr12 136352804 136353097 -7929392 - AluSq SINE Alu -7 306 11 2523 223 87 31 chr12 136353097 136353397 -7929092 + L1ME1 LINE L1 5561 5843 -323 2943 74 0 3 chr12 136353397 136353762 -7928727 + THE1B LTR MaLR 1 364 0 2523 223 87 31 chr12 136353762 136354009 -7928480 + L1ME1 LINE L1 5843 6162 -4 397 223 82 92 chr12 136354198 136354490 -7927999 - L1MC4a LINE L1 -1822 5986 5698 2046 115 3 0 chr12 136354499 136354794 -7927695 + AluSq SINE Alu 17 312 -1 1867 122 0 4 chr12 136354839 136355132 -7927357 - AluSx SINE Alu 0 308 17 271 247 52 41 chr12 136355158 136355255 -7927234 + MIR SINE MIR 139 236 -26 361 292 50 8 chr12 136355679 136355799 -7926690 - L1MC4a LINE L1 -2110 5698 5574 1907 131 112 7 chr12 136355819 136356124 -7926365 + MER1B DNA MER1_type 1 337 0 462 18 0 0 chr12 136356998 136357053 -7925436 + (TG)n Simple_repeat Simple_repeat 2 56 0 275 300 171 45 chr12 136358092 136358806 -7923683 + L2 LINE L2 1761 2564 -750 1551 221 40 62 chr12 136358879 136359359 -7923130 - LTR55 LTR ERV -79 469 1 241 304 152 32 chr12 136359392 136359701 -7922788 + L2 LINE L2 2631 2976 -338 917 221 160 17 chr12 136359769 136360063 -7922426 - MLT1C LTR MaLR -64 403 68 265 281 66 41 chr12 136360192 136360313 -7922176 + L2 LINE L2 3170 3293 -20 1452 222 52 27 chr12 136360316 136360681 -7921808 + MLT1A2 LTR MaLR 1 374 0 439 332 86 22 chr12 136361728 136361960 -7920529 + L1ME LINE L1 5266 5512 -609 236 213 98 0 chr12 136361961 136362022 -7920467 + L1ME LINE L1 5560 5626 -495 817 142 69 118 chr12 136362066 136362270 -7920219 + AluJo SINE Alu 1 194 -118 505 240 59 95 chr12 136362943 136363093 -7919396 + MIR SINE MIR 21 162 -100 1271 178 62 22 chr12 136363093 136363368 -7919121 - AluJb SINE Alu -26 286 1 505 240 59 95 chr12 136363368 136363438 -7919051 + MIR SINE MIR 162 233 -29 196 305 0 17 chr12 136363529 136363588 -7918901 + MIR SINE MIR 192 249 -13 306 0 0 0 chr12 136363908 136363942 -7918547 + (T)n Simple_repeat Simple_repeat 1 34 0 1341 198 57 72 chr12 136364279 136364753 -7917736 - MLT1C LTR MaLR 0 467 1 573 261 103 90 chr12 136364885 136365195 -7917294 - MER102b DNA MER1_type -27 314 1 4755 193 32 20 chr12 136365265 136366292 -7916197 - MER45B DNA AcHobo 0 1040 2 671 267 105 33 chr12 136366614 136366947 -7915542 + MLT1K LTR MaLR 11 367 -221 21 36 0 0 chr12 136366998 136367026 -7915463 + AT_rich Low_complexity Low_complexity 1 28 0 2020 129 0 0 chr12 136367026 136367320 -7915169 + AluSx SINE Alu 1 294 -18 901 294 43 38 chr12 136367327 136367725 -7914764 - L1ME1 LINE L1 -28 6138 5739 243 109 65 43 chr12 136367738 136367784 -7914705 + MLT1K LTR MaLR 435 481 -107 272 343 38 0 chr12 136368042 136368147 -7914342 - MIR SINE MIR -117 145 37 500 282 77 17 chr12 136368590 136368771 -7913718 - MLT1J2 LTR MaLR -19 431 240 316 309 90 27 chr12 136369111 136369367 -7913122 - HAL1 LINE L1 -11 2496 2225 229 286 0 0 chr12 136369431 136369494 -7912995 - L2 LINE L2 0 3272 3210 262 263 40 0 chr12 136369504 136369580 -7912909 - MLT1J LTR MaLR -2 509 431 1597 147 45 0 chr12 136370499 136370765 -7911724 - MLT1B LTR MaLR 0 390 113 767 184 0 7 chr12 136371113 136371249 -7911240 - MLT1B LTR MaLR -255 135 1 929 230 40 40 chr12 136372460 136372712 -7909777 + MIR SINE MIR 2 253 -9 224 284 209 15 chr12 136372998 136373132 -7909357 + MER5B DNA MER1_type 19 178 0 303 287 74 8 chr12 136373608 136373730 -7908759 + MIR SINE MIR 15 144 -118 638 211 88 44 chr12 136373731 136373958 -7908531 + LTR50 LTR ERVL 1 237 -558 249 277 59 20 chr12 136374915 136375016 -7907473 + MIR SINE MIR 86 190 -72 359 278 102 44 chr12 136375324 136375529 -7906960 - L2 LINE L2 -3 3310 3094 1347 220 59 82 chr12 136375537 136376010 -7906479 - LTR33A LTR ERVL 0 523 62 643 243 87 37 chr12 136378163 136378463 -7904026 - L1ME4a LINE L1 -239 5882 5568 183 100 0 0 chr12 136379337 136379367 -7903122 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 698 232 30 63 chr12 136379600 136379647 -7902842 - MIR SINE MIR -16 246 199 1729 162 7 39 chr12 136379647 136379956 -7902533 - AluJb SINE Alu -12 300 2 698 232 30 63 chr12 136379956 136380145 -7902344 - MIR SINE MIR -63 199 18 302 223 27 62 chr12 136380151 136380263 -7902226 - L1ME LINE L1 -392 5729 5622 3150 181 73 7 chr12 136381763 136382383 -7900106 - MER67B LTR ERV1 0 661 1 846 219 114 0 chr12 136382442 136382643 -7899846 - MER58A DNA MER1_type 0 224 1 893 253 119 4 chr12 136382815 136383336 -7899153 - LTR50 LTR ERVL -9 786 120 799 241 31 5 chr12 136383780 136383975 -7898514 + MIR SINE MIR 63 262 0 323 227 97 60 chr12 136384513 136384698 -7897791 - MER117 DNA MER1_type -5 192 1 587 272 79 18 chr12 136384822 136385050 -7897439 - MIR SINE MIR -5 257 16 526 263 156 81 chr12 136385568 136385876 -7896613 + MER102b DNA MER1_type 11 341 0 262 160 0 0 chr12 136386040 136386090 -7896399 + MIR SINE MIR 181 230 -32 370 350 32 18 chr12 136386163 136386383 -7896106 - MIR SINE MIR -27 235 13 1669 198 76 7 chr12 136386506 136386935 -7895554 - MER89 LTR ERV1 0 559 2 827 181 7 0 chr12 136387537 136387686 -7894803 + MIR SINE MIR 1 150 -112 631 287 72 4 chr12 136387760 136387997 -7894492 + L2 LINE L2 2422 2674 -640 291 221 199 29 chr12 136388020 136388156 -7894333 + L2 LINE L2 2790 2948 -366 615 199 7 34 chr12 136388270 136388416 -7894073 + L2 LINE L2 3172 3313 0 924 275 84 36 chr12 136388704 136389170 -7893319 + MER113 DNA MER1_type? 30 517 -4 1965 220 136 19 chr12 136389597 136390216 -7892273 - L1MC4a LINE L1 0 7808 7118 1784 147 11 0 chr12 136390303 136390575 -7891914 + LTR64 LTR ERVK 1 275 -283 226 121 0 0 chr12 136390577 136390610 -7891879 + LTR64 LTR ERVK 254 286 -272 2310 202 62 6 chr12 136390992 136391118 -7891371 + LTR64 LTR ERVK 1 119 -394 2296 86 0 0 chr12 136391118 136391423 -7891066 + AluSc SINE Alu 1 305 0 2310 202 62 6 chr12 136391423 136391781 -7890708 + LTR64 LTR ERVK 119 513 0 473 306 27 0 chr12 136392191 136392338 -7890151 + MIR SINE MIR 46 196 -66 460 233 25 8 chr12 136392582 136392702 -7889787 - MIR SINE MIR -117 145 24 182 326 93 39 chr12 136393274 136393403 -7889086 - MIR SINE MIR -8 254 119 1389 204 7 24 chr12 136393769 136394063 -7888426 - L1MB1 LINE L1 0 6168 5880 227 269 13 39 chr12 136394293 136394371 -7888118 - L1MB1 LINE L1 -2045 5763 5688 269 297 14 0 chr12 136394414 136394488 -7888001 + MIR SINE MIR 2 76 -186 451 219 10 0 chr12 136394553 136394649 -7887840 + LTR33 LTR ERVL 368 464 -57 427 317 65 22 chr12 136394926 136395156 -7887333 - MIR SINE MIR -16 246 7 280 246 50 86 chr12 136395624 136395844 -7886645 - L1MC4 LINE L1 -1 8041 7830 1295 219 21 12 chr12 136395870 136396203 -7886286 - L1MB1 LINE L1 -1538 4608 4273 2699 245 52 108 chr12 136396212 136397065 -7885424 - L1ME LINE L1 -3890 2190 1291 3810 113 17 27 chr12 136397065 136397696 -7884793 - L1MA4 LINE L1 -16 6284 5660 2699 245 52 108 chr12 136397696 136399105 -7883384 - L1ME LINE L1 -4789 1291 69 611 226 104 32 chr12 136399151 136399496 -7882993 - L1MEc LINE L1 -4122 2274 1905 1394 223 27 6 chr12 136399501 136399833 -7882656 - L1MC4 LINE L1 -472 7570 7232 338 299 82 82 chr12 136399880 136400111 -7882378 + LTR33A LTR ERVL 99 329 -194 4472 48 0 4 chr12 136400198 136400737 -7881752 - L1PA5 LINE L1 -6 6148 5612 500 294 90 53 chr12 136400737 136401090 -7881399 - L2 LINE L2 -1065 2249 1877 2265 99 3 0 chr12 136401090 136401383 -7881106 + AluSx SINE Alu 1 294 -18 500 294 90 53 chr12 136401383 136401440 -7881049 - L2 LINE L2 -1437 1877 1824 463 255 99 111 chr12 136401464 136401896 -7880593 - MLT1J LTR MaLR -11 500 73 824 133 0 37 chr12 136401896 136402031 -7880458 - FLAM_C SINE Alu -3 130 1 463 255 99 111 chr12 136402031 136402104 -7880385 - MLT1J LTR MaLR -438 73 1 1584 204 118 61 chr12 136402164 136402688 -7879801 - MLT2B3 LTR ERVL 0 554 1 651 282 144 34 chr12 136404150 136404533 -7877956 + L2 LINE L2 2870 3294 -19 1082 164 53 8 chr12 136404590 136404927 -7877562 + MLT1B LTR MaLR 1 379 -11 2037 132 0 0 chr12 136405116 136405417 -7877072 - AluSx SINE Alu 0 301 1 1033 234 52 66 chr12 136407322 136407763 -7874726 - MER113 DNA MER1_type? -80 441 7 201 272 130 0 chr12 136407844 136407936 -7874553 + MIR SINE MIR 62 165 -97 222 176 81 54 chr12 136408337 136408411 -7874078 + MER5A DNA MER1_type 63 138 -51 381 221 0 79 chr12 136408810 136408937 -7873552 + MIR SINE MIR 114 230 -32 195 337 24 0 chr12 136409566 136409649 -7872840 + MIR SINE MIR 1 85 -177 666 299 66 61 chr12 136409655 136410047 -7872442 - MLT1J LTR MaLR -2 509 116 1367 164 90 155 chr12 136410450 136410986 -7871503 + MLT1D LTR MaLR 3 503 -2 1465 219 106 16 chr12 136411362 136411786 -7870703 - MLT1C LTR MaLR 0 467 6 225 200 0 0 chr12 136412020 136412060 -7870429 + LTR33 LTR ERVL 127 166 -355 287 286 89 0 chr12 136412128 136412240 -7870249 + LTR33A LTR ERVL 263 384 -139 306 286 183 25 chr12 136412601 136412842 -7869647 - LTR16C LTR ERVL -23 468 190 255 259 0 0 chr12 136412994 136413079 -7869410 + (TG)n Simple_repeat Simple_repeat 2 86 0 209 275 115 10 chr12 136413784 136413888 -7868601 + MIR SINE MIR 11 133 -75 386 288 23 34 chr12 136414564 136414741 -7867748 + MER113 DNA MER1_type? 1 175 -346 1112 240 51 63 chr12 136414891 136415267 -7867222 + MER113 DNA MER1_type? 36 408 -113 2155 98 18 4 chr12 136415267 136415568 -7866921 - AluSx SINE Alu 0 305 1 1112 240 51 63 chr12 136415568 136415680 -7866809 + MER113 DNA MER1_type? 408 520 -1 2070 148 24 42 chr12 136415719 136415976 -7866513 - L1MA7 LINE L1 -1 6290 6043 2218 126 0 3 chr12 136415976 136416277 -7866212 - AluSx SINE Alu -12 300 1 2070 148 24 42 chr12 136416277 136416445 -7866044 - L1MA7 LINE L1 -248 6043 5873 244 273 218 0 chr12 136417128 136417238 -7865251 - L2 LINE L2 0 3313 3180 1875 151 18 0 chr12 136417302 136417613 -7864876 - AluJb SINE Alu 0 316 1 194 313 0 0 chr12 136418004 136418071 -7864418 - L2 LINE L2 -357 2956 2890 191 274 65 0 chr12 136418167 136418229 -7864260 - L2 LINE L2 -582 2732 2667 180 0 0 0 chr12 136419122 136419142 -7863347 + (TCCA)n Simple_repeat Simple_repeat 2 21 0 205 325 13 0 chr12 136419382 136419459 -7863030 + L3b LINE CR1 1391 1468 -115 2229 128 0 3 chr12 136419473 136419785 -7862704 + AluSp SINE Alu 3 313 0 373 315 24 0 chr12 136419964 136420091 -7862398 - MER117 DNA MER1_type -67 130 1 426 20 0 0 chr12 136420339 136420390 -7862099 + (CA)n Simple_repeat Simple_repeat 2 52 0 460 251 57 52 chr12 136420416 136420627 -7861862 - L2 LINE L2 -55 3258 3047 306 132 0 0 chr12 136420645 136420698 -7861791 + (TCCCC)n Simple_repeat Simple_repeat 2 54 0 216 170 19 38 chr12 136420700 136420753 -7861736 + CT-rich Low_complexity Low_complexity 1 52 0 657 223 134 20 chr12 136420788 136420990 -7861499 + MIR SINE MIR 31 255 -7 642 271 24 5 chr12 136421211 136421418 -7861071 - L1ME3A LINE L1 -5 6165 5955 1060 239 138 12 chr12 136421422 136421749 -7860740 + L1ME3A LINE L1 5602 5969 -193 2130 197 126 18 chr12 136421766 136422274 -7860215 + MLT1F1 LTR MaLR 1 563 -4 306 0 0 0 chr12 136422366 136422400 -7860089 + (TG)n Simple_repeat Simple_repeat 2 35 0 26 0 0 0 chr12 136423075 136423101 -7859388 + AT_rich Low_complexity Low_complexity 1 26 0 1597 169 3 10 chr12 136423102 136423392 -7859097 - AluJb SINE Alu -24 288 1 697 311 20 24 chr12 136423649 136423900 -7858589 - MIR SINE MIR -11 251 2 276 236 7 160 chr12 136424795 136424939 -7857550 - L2 LINE L2 -222 3050 2929 335 214 146 10 chr12 136424940 136425043 -7857446 - LTR33 LTR ERVL -3 518 402 805 264 61 30 chr12 136425149 136425380 -7857109 - LTR33 LTR ERVL -277 244 7 776 189 92 0 chr12 136425473 136425626 -7856863 - MIR SINE MIR -73 189 23 511 275 16 31 chr12 136425921 136426080 -7856409 - L2 LINE L2 -936 2378 2221 1627 174 10 17 chr12 136426080 136426378 -7856111 + L1PB4 LINE L1 5858 6153 -3 511 275 16 31 chr12 136426378 136426411 -7856078 - L2 LINE L2 -1093 2221 2189 22 0 0 0 chr12 136426732 136426754 -7855735 + AT_rich Low_complexity Low_complexity 1 22 0 682 237 155 71 chr12 136427001 136427439 -7855050 - MLT1K LTR MaLR 0 476 2 802 180 11 79 chr12 136427728 136427828 -7854661 - MIR SINE MIR -10 252 168 1590 171 21 7 chr12 136427828 136428134 -7854355 - AluJo SINE Alu 0 310 1 802 180 11 79 chr12 136428134 136428221 -7854268 - MIR SINE MIR -94 168 77 1855 106 4 4 chr12 136428300 136428574 -7853915 - AluY SINE Alu -15 296 23 423 262 24 89 chr12 136429496 136429664 -7852825 - MER20B DNA MER1_type -626 157 1 253 246 15 31 chr12 136429664 136429727 -7852762 - Charlie8 DNA MER1_type -21 2396 2335 624 258 121 0 chr12 136429853 136430051 -7852438 - Charlie8 DNA MER1_type -2141 276 55 2269 251 28 14 chr12 136430057 136430627 -7851862 - MLT1E LTR MaLR -7 586 9 519 17 0 0 chr12 136430785 136430845 -7851644 + (TG)n Simple_repeat Simple_repeat 2 61 0 1025 179 6 6 chr12 136430857 136431030 -7851459 + MLT1C LTR MaLR 295 467 0 407 283 48 37 chr12 136432214 136432401 -7850088 + MER5A DNA MER1_type 1 189 0 1332 254 45 26 chr12 136432540 136432961 -7849528 - L2 LINE L2 -5 3308 2880 195 42 0 0 chr12 136433502 136433526 -7848963 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 1756 136 48 0 chr12 136433531 136433803 -7848686 - AluSx SINE Alu -27 285 1 2484 195 16 40 chr12 136434218 136434771 -7847718 + LTR55 LTR ERV 1 540 -8 579 296 134 34 chr12 136435050 136435401 -7847088 + MLT1K LTR MaLR 24 409 -179 780 272 41 16 chr12 136435859 136436102 -7846387 - MIR SINE MIR 0 262 14 263 294 141 11 chr12 136436295 136436387 -7846102 - MIR SINE MIR 0 262 159 1403 217 125 38 chr12 136436391 136436815 -7845674 - MLT1C LTR MaLR 0 467 7 192 327 18 0 chr12 136436872 136436927 -7845562 - MIR SINE MIR -184 78 23 463 318 66 8 chr12 136436931 136437197 -7845292 + MIR SINE MIR 2 261 -1 207 347 40 8 chr12 136437605 136437729 -7844760 + MIR SINE MIR 122 249 -13 2727 184 64 49 chr12 136438071 136438617 -7843872 - MER77 LTR ERV1 -6 599 54 1451 294 49 15 chr12 136439218 136439600 -7842889 - L1ME3A LINE L1 -7 6155 5732 1688 185 54 14 chr12 136439600 136439951 -7842538 + MLT1A1 LTR MaLR 1 365 0 1451 294 49 15 chr12 136439951 136440249 -7842240 - L1ME3A LINE L1 -430 5732 5446 257 73 0 24 chr12 136440294 136440335 -7842154 + (TAA)n Simple_repeat Simple_repeat 1 40 0 1233 0 55 15 chr12 136440898 136441468 -7841021 + (GAGTG)n Simple_repeat Simple_repeat 1 592 0 2079 66 0 15 chr12 136441510 136441783 -7840706 + L1PA7 LINE L1 5884 6152 -2 283 261 11 23 chr12 136442730 136442818 -7839671 + MIR SINE MIR 16 102 -106 4798 165 34 18 chr12 136443590 136444561 -7837928 - L1MB5 LINE L1 0 6174 5190 891 310 51 22 chr12 136447196 136447567 -7834922 - MLT1L LTR MaLR -8 607 226 243 174 0 116 chr12 136447665 136447734 -7834755 - MLT1L LTR MaLR -554 61 1 709 281 116 39 chr12 136447871 136448156 -7834333 - MLT1K LTR MaLR -91 497 191 21 36 0 0 chr12 136449031 136449059 -7833430 + AT_rich Low_complexity Low_complexity 1 28 0 2749 97 8 0 chr12 136449523 136449884 -7832605 - THE1B LTR MaLR 0 364 1 11475 99 6 30 chr12 136449884 136451504 -7830985 - THE1B-int LTR MaLR 0 1580 1 2819 99 0 0 chr12 136451504 136451868 -7830621 - THE1B LTR MaLR 0 364 1 506 252 133 64 chr12 136452378 136452596 -7829893 - MIR SINE MIR -22 240 8 1286 251 73 36 chr12 136452768 136453207 -7829282 + MLT1C LTR MaLR 8 462 -5 340 306 100 38 chr12 136453253 136453413 -7829076 - MER5B DNA MER1_type -8 170 1 528 267 87 61 chr12 136453881 136454158 -7828331 - L1ME4a LINE L1 -4 6117 5834 1056 175 139 132 chr12 136454946 136455400 -7827089 - MER31B LTR ERV1 -1 542 9 485 254 66 16 chr12 136455401 136455523 -7826966 + MLT1I LTR MaLR 282 409 0 5969 133 41 15 chr12 136455542 136456620 -7825869 - L1MC2 LINE L1 -2 6342 5185 312 299 0 0 chr12 136457196 136457263 -7825226 - L2 LINE L2 -214 3058 2992 708 245 106 0 chr12 136457518 136457726 -7824763 - MIR SINE MIR -9 253 24 317 157 0 0 chr12 136457714 136457765 -7824724 + L2 LINE L2 3256 3306 -7 * 1585 169 20 14 chr12 136458255 136458550 -7823939 - AluJo SINE Alu -15 297 1 238 175 18 18 chr12 136458635 136458692 -7823797 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 213 120 0 60 chr12 136458695 136458745 -7823744 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 3347 152 53 61 chr12 136459229 136459458 -7823031 - L1MC3 LINE L1 -1 7784 7555 1985 138 0 16 chr12 136459458 136459762 -7822727 - AluSx SINE Alu -13 299 1 3347 152 53 61 chr12 136459762 136460250 -7822239 - L1MC3 LINE L1 -230 7555 7073 279 211 35 162 chr12 136460284 136460426 -7822063 + L2 LINE L2 3149 3272 0 331 324 66 39 chr12 136460594 136460853 -7821636 - L2 LINE L2 -164 3149 2884 744 287 181 10 chr12 136460917 136461511 -7820978 - L2 LINE L2 -5 3308 2606 214 248 114 29 chr12 136462144 136462249 -7820240 + MIR SINE MIR 35 148 -60 232 143 0 86 chr12 136462592 136462662 -7819827 - LTR66 LTR ERVL -146 464 401 385 246 18 9 chr12 136462667 136462781 -7819708 + L1MC4 LINE L1 1995 6983 -1339 393 22 0 0 chr12 136462785 136462831 -7819658 + (GA)n Simple_repeat Simple_repeat 2 47 0 1406 19 0 0 chr12 136463779 136463939 -7818550 - L1PA2 LINE L1 -2 6153 5994 1019 7 1 0 chr12 136463939 136464070 -7818419 + L1P1 LINE L1 5709 5840 -315 1944 241 63 4 chr12 136464207 136464684 -7817805 - MLT1D LTR MaLR 0 505 1 919 249 116 25 chr12 136464717 136465122 -7817367 + LTR33A LTR ERVL 82 523 0 610 293 152 17 chr12 136465773 136466182 -7816307 - L2 LINE L2 0 3313 2850 2159 164 29 5 chr12 136466650 136467035 -7815454 + MLT1C LTR MaLR 74 467 0 1639 128 4 0 chr12 136467594 136467843 -7814646 - L1MB5 LINE L1 -421 5753 5504 1915 197 47 3 chr12 136467845 136468231 -7814258 + L1MB5 LINE L1 5763 6165 -9 429 341 9 0 chr12 136469036 136469264 -7813225 - L1ME3A LINE L1 -215 5947 5712 6212 159 3 14 chr12 136469301 136470429 -7812060 - L1P LINE L1 -1379 4767 3652 24 0 0 0 chr12 136471023 136471047 -7811442 + AT_rich Low_complexity Low_complexity 1 24 0 318 290 124 0 chr12 136471060 136471205 -7811284 + Charlie8 DNA MER1_type 115 277 -2140 766 250 16 0 chr12 136471296 136471480 -7811009 + MIR SINE MIR 70 256 -6 914 262 59 9 chr12 136471485 136471809 -7810680 + Charlie8 DNA MER1_type 350 689 -1728 248 307 139 18 chr12 136471960 136472126 -7810363 + MIR SINE MIR 23 208 -54 735 282 37 25 chr12 136472649 136472890 -7809599 + MIR SINE MIR 6 249 -13 21 0 0 0 chr12 136474051 136474072 -7808417 + AT_rich Low_complexity Low_complexity 1 21 0 467 269 153 19 chr12 136474597 136474905 -7807584 - L1ME4a LINE L1 -212 5909 5561 1481 206 95 16 chr12 136474919 136475287 -7807202 + MLT2C1 LTR ERVL 1 397 0 307 235 157 10 chr12 136475529 136475631 -7806858 + MIR SINE MIR 48 164 -98 592 266 26 13 chr12 136475634 136475788 -7806701 + LTR41 LTR ERVL 5 160 -613 374 257 76 64 chr12 136476231 136476480 -7806009 + LTR41 LTR ERVL 513 764 -9 284 229 145 0 chr12 136476481 136476564 -7805925 + MIR SINE MIR 168 262 0 510 306 56 15 chr12 136476754 136476950 -7805539 + MIR SINE MIR 49 252 -10 623 318 130 26 chr12 136477211 136478183 -7804306 - L1MEc LINE L1 -3873 2523 1451 2755 209 90 49 chr12 136478194 136478254 -7804235 - L1ME1 LINE L1 -9 6157 6101 1987 107 63 0 chr12 136478254 136478525 -7803964 + AluSq SINE Alu 9 296 -17 2755 209 90 49 chr12 136478525 136479227 -7803262 - L1ME1 LINE L1 -65 6101 5358 2384 80 0 3 chr12 136479227 136479529 -7802960 - AluY SINE Alu -10 301 1 2755 209 90 49 chr12 136479529 136479574 -7802915 - L1ME1 LINE L1 -808 5358 5316 953 241 115 0 chr12 136479558 136479907 -7802582 - L1ME1 LINE L1 -2689 3457 3069 * 384 219 18 2 chr12 136479954 136480037 -7802452 - MLT1C LTR MaLR -48 419 261 234 191 0 0 chr12 136480023 136480065 -7802424 + MLT1K LTR MaLR 125 166 -224 * 3787 241 42 87 chr12 136480071 136481247 -7801242 + L1MC4 LINE L1 6395 7472 -570 192 77 0 0 chr12 136481247 136481273 -7801216 + (TG)n Simple_repeat Simple_repeat 2 27 0 3787 241 42 87 chr12 136481273 136481819 -7800670 + L1MC4 LINE L1 7472 8041 -1 1394 165 35 15 chr12 136482340 136482600 -7799889 + MSTB LTR MaLR 161 425 -1 372 243 0 0 chr12 136482601 136482675 -7799814 - L2 LINE L2 -1038 2276 2203 203 309 55 0 chr12 136483383 136483438 -7799051 - L2 LINE L2 -93 3179 3122 289 293 116 67 chr12 136483543 136483768 -7798721 + MLT1K LTR MaLR 196 431 -157 297 184 11 23 chr12 136483892 136483979 -7798510 + CT-rich Low_complexity Low_complexity 3 88 0 3867 186 20 8 chr12 136484117 136484852 -7797637 - L1MB5 LINE L1 -1 6173 5430 198 345 35 26 chr12 136484911 136485024 -7797465 - L2 LINE L2 -262 3010 2897 3129 178 45 8 chr12 136485027 136485788 -7796701 - L1MB5 LINE L1 -1230 4916 3965 193 325 32 49 chr12 136486066 136486189 -7796300 - MIR3 SINE MIR -74 134 14 259 245 85 38 chr12 136486906 136487012 -7795477 + LTR16B LTR ERVL 321 431 -33 439 305 119 0 chr12 136488272 136488449 -7794040 - MIR SINE MIR -48 214 17 254 370 0 0 chr12 136488494 136488575 -7793914 + L2 LINE L2 3233 3313 0 1631 214 55 12 chr12 136489076 136489421 -7793068 + MLT1A1 LTR MaLR 1 360 -5 774 311 37 60 chr12 136489621 136490055 -7792434 + L2 LINE L2 2849 3272 0 431 171 0 73 chr12 136490532 136490777 -7791712 + CT-rich Low_complexity Low_complexity 1 227 0 296 48 24 0 chr12 136490778 136490820 -7791669 + (TCCCC)n Simple_repeat Simple_repeat 4 46 0 1559 181 26 0 chr12 136490837 136491108 -7791381 - AluJo SINE Alu -33 279 2 583 244 77 37 chr12 136491163 136491409 -7791080 - MLT1K LTR MaLR -12 576 321 23 0 0 0 chr12 136491785 136491808 -7790681 + AT_rich Low_complexity Low_complexity 1 23 0 3743 63 23 0 chr12 136491880 136492323 -7790166 + MLT2A2 LTR ERVL 1 453 0 2524 163 70 62 chr12 136492684 136493285 -7789204 - L1MB5 LINE L1 -8 6166 5561 36881 66 6 6 chr12 136494223 136499770 -7782719 + L1PA6 LINE L1 606 6149 -5 956 117 0 0 chr12 136500584 136500712 -7781777 - AluSq/x SINE Alu -180 133 6 1390 158 122 20 chr12 136501164 136501418 -7781071 - AluJo SINE Alu -28 284 5 434 265 0 0 chr12 136502854 136502952 -7779537 + MIR SINE MIR 5 102 -160 399 129 14 57 chr12 136503874 136503944 -7778545 - MLT1J2 LTR MaLR 0 450 384 528 285 87 0 chr12 136504092 136504264 -7778225 - MLT1J2 LTR MaLR -248 202 16 400 177 0 0 chr12 136504875 136504954 -7777535 + C-rich Low_complexity Low_complexity 1 79 0 496 225 0 14 chr12 136504979 136505121 -7777368 + T-rich Low_complexity Low_complexity 2 141 0 453 280 14 40 chr12 136505126 136505396 -7777093 + CT-rich Low_complexity Low_complexity 1 262 0 195 220 0 0 chr12 136505403 136505453 -7777036 + T-rich Low_complexity Low_complexity 5 54 0 834 220 41 120 chr12 136505679 136506070 -7776419 + MLT1A1 LTR MaLR 4 363 -2 248 238 50 106 chr12 136506152 136506312 -7776177 + MLT1L LTR MaLR 40 190 -425 282 180 0 0 chr12 136507247 136507308 -7775181 + (TCCA)n Simple_repeat Simple_repeat 4 64 0 203 385 0 0 chr12 136507309 136507405 -7775084 + C-rich Low_complexity Low_complexity 1 96 0 275 119 0 0 chr12 136508538 136508580 -7773909 + FLAM_A SINE Alu 86 127 -6 69 13 0 0 chr12 136508580 136508656 -7773833 + AT_rich Low_complexity Low_complexity 1 76 0 2362 196 86 2 chr12 136508662 136509115 -7773374 - MLT1F1 LTR MaLR -12 555 65 2035 112 14 0 chr12 136509116 136509412 -7773077 + AluY SINE Alu 1 300 -11 1309 211 175 0 chr12 136509412 136509777 -7772712 + LTR64 LTR ERVK 130 558 0 775 208 7 0 chr12 136510077 136510226 -7772263 - MIR SINE MIR -112 150 1 1643 200 76 7 chr12 136510831 136511260 -7771229 + MER89 LTR ERV1 2 559 0 206 391 8 23 chr12 136511383 136511511 -7770978 + MIR SINE MIR 13 138 -124 329 280 72 48 chr12 136512296 136512421 -7770068 + L2 LINE L2 3137 3264 -8 183 333 69 35 chr12 136512590 136512677 -7769812 + L2 LINE L2 3133 3222 -50 * 274 258 135 0 chr12 136512675 136512764 -7769725 - L2 LINE L2 -3 3310 3210 28 29 0 0 chr12 136512861 136512896 -7769593 + AT_rich Low_complexity Low_complexity 1 35 0 256 116 0 87 chr12 136512935 136513004 -7769485 - L2 LINE L2 -215 3057 2995 388 292 33 123 chr12 136513125 136513451 -7769038 + L2 LINE L2 3005 3301 -7 180 0 0 0 chr12 136513451 136513471 -7769018 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 263 298 0 12 chr12 136514351 136514435 -7768054 - L1ME LINE L1 -486 5680 5598 * 2191 232 119 71 chr12 136514416 136514689 -7767800 - L1ME LINE L1 -4916 1164 906 2196 113 3 0 chr12 136514689 136514989 -7767500 - AluSq SINE Alu -12 301 1 2191 232 119 71 chr12 136514989 136515810 -7766679 - L1ME LINE L1 -5174 906 18 23 0 0 0 chr12 136516206 136516229 -7766260 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr12 136516291 136516314 -7766175 + AT_rich Low_complexity Low_complexity 1 23 0 6199 60 6 11 chr12 136516713 136517782 -7764707 - L1P2 LINE L1 -515 5639 4573 9307 67 7 3 chr12 136518561 136519809 -7762680 + L1P LINE L1 2507 3759 -2387 502 246 121 5 chr12 136521159 136521358 -7761131 + L1M4 LINE L1 3942 4163 -1983 520 242 6 68 chr12 136521389 136521442 -7761047 - MLT1H LTR MaLR -25 524 469 2476 127 28 19 chr12 136521442 136521803 -7760686 + THE1B LTR MaLR 1 364 0 520 242 6 68 chr12 136521803 136521910 -7760579 - MLT1H LTR MaLR -80 469 374 259 277 0 0 chr12 136521907 136521972 -7760517 + MLT1H LTR MaLR 485 549 0 * 421 267 30 0 chr12 136522270 136522406 -7760083 - MIR3 SINE MIR -3 205 66 42 20 0 0 chr12 136522421 136522470 -7760019 + AT_rich Low_complexity Low_complexity 1 49 0 1648 171 13 41 chr12 136522471 136522786 -7759703 - AluJo SINE Alu -6 306 1 645 272 124 9 chr12 136523220 136523438 -7759051 - MIR SINE MIR 0 262 20 2602 193 78 17 chr12 136523460 136523528 -7758961 + MLT1F1 LTR MaLR 1 63 -504 2348 87 3 13 chr12 136523528 136523840 -7758649 - AluY SINE Alu -2 309 1 2602 193 78 17 chr12 136523840 136524294 -7758195 + MLT1F1 LTR MaLR 63 555 -12 69 13 0 0 chr12 136524300 136524376 -7758113 + AT_rich Low_complexity Low_complexity 1 76 0 276 119 0 0 chr12 136524376 136524418 -7758071 - FLAM_A SINE Alu -6 127 86 255 266 53 43 chr12 136525871 136525965 -7756524 - L2 LINE L2 -37 3235 3141 470 196 20 10 chr12 136526387 136526489 -7756000 - MLT2F LTR ERVL -537 126 24 180 111 0 0 chr12 136527849 136527876 -7754613 + (TCC)n Simple_repeat Simple_repeat 1 27 0 465 317 66 11 chr12 136528429 136528612 -7753877 + LTR33 LTR ERVL 229 421 -100 318 250 177 65 chr12 136529594 136529842 -7752647 - MLT1K LTR MaLR -22 566 291 285 378 6 6 chr12 136531056 136531212 -7751277 - MLT1I LTR MaLR -159 250 95 7560 35 28 0 chr12 136532392 136533265 -7749224 + MER11D LTR ERVK 1 897 0 753 228 13 57 chr12 136533329 136533557 -7748932 - MER20 DNA MER1_type 0 219 2 265 322 82 56 chr12 136533593 136534043 -7748446 - MER89-int LTR ERV1 -3269 3532 3071 688 142 16 120 chr12 136534255 136534438 -7748051 - MER53 DNA DNA 0 189 26 1982 68 8 0 chr12 136534441 136534692 -7747797 - L1PA10 LINE L1 -4 6164 5912 305 358 0 0 chr12 136535036 136535131 -7747358 + (TG)n Simple_repeat Simple_repeat 2 96 0 330 228 235 25 chr12 136535167 136535329 -7747160 + L2 LINE L2 2926 3121 -192 717 205 80 35 chr12 136535340 136535540 -7746949 - MLT1I LTR MaLR -5 404 196 478 181 174 43 chr12 136535741 136535879 -7746610 + L2 LINE L2 3158 3313 0 2259 235 92 51 chr12 136537661 136538486 -7744003 + L1ME1 LINE L1 6 795 -5305 2096 113 3 0 chr12 136538486 136538786 -7743703 + AluSq SINE Alu 1 301 -12 2259 235 92 51 chr12 136538786 136539591 -7742898 + L1ME1 LINE L1 795 6085 -15 24 77 0 0 chr12 136539595 136539647 -7742842 + AT_rich Low_complexity Low_complexity 1 52 0 1842 248 54 32 chr12 136540315 136541215 -7741274 - L2 LINE L2 0 3313 2392 2091 121 0 16 chr12 136541838 136542153 -7740336 - AluSx SINE Alu -2 310 1 197 245 20 92 chr12 136542168 136542266 -7740223 + L2 LINE L2 3179 3269 -3 228 235 235 0 chr12 136542384 136542469 -7740020 + MLT1I LTR MaLR 6 110 -299 2097 177 50 5 chr12 136543961 136544401 -7738088 - L1MB7 LINE L1 -2 6182 5723 2537 48 0 6 chr12 136544638 136544949 -7737540 + AluY SINE Alu 1 309 -2 474 284 101 72 chr12 136545219 136545525 -7736964 - MER102a DNA MER1_type -15 315 1 180 0 0 0 chr12 136546280 136546300 -7736189 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 435 295 33 123 chr12 136546300 136546626 -7735863 - L2 LINE L2 -13 3300 3005 201 243 0 0 chr12 136546707 136546744 -7735745 - L2 LINE L2 0 3272 3236 257 116 0 87 chr12 136546748 136546817 -7735672 + L2 LINE L2 2995 3057 -215 28 29 0 0 chr12 136546856 136546891 -7735598 + AT_rich Low_complexity Low_complexity 1 35 0 275 281 135 0 chr12 136546988 136547077 -7735412 + L2 LINE L2 3210 3310 -3 363 317 24 0 chr12 136547331 136547454 -7735035 - L2 LINE L2 -8 3305 3180 186 43 0 0 chr12 136547944 136547967 -7734522 + (TCC)n Simple_repeat Simple_repeat 3 25 0 488 270 4 22 chr12 136548191 136548719 -7733770 + (CA)n Simple_repeat Simple_repeat 1 518 0 185 238 10 0 chr12 136548741 136548842 -7733647 + (CA)n Simple_repeat Simple_repeat 1 102 0 329 304 0 7 chr12 136548857 136548992 -7733497 + (CA)n Simple_repeat Simple_repeat 1 134 0 242 229 5 28 chr12 136549039 136549252 -7733237 + (CA)n Simple_repeat Simple_repeat 1 208 0 1839 97 26 94 chr12 136550222 136550561 -7731928 - AluYb8 SINE Alu -2 316 1 264 271 29 93 chr12 136550774 136550914 -7731575 - MIR SINE MIR -59 203 73 689 195 12 35 chr12 136550916 136551085 -7731404 + MER3 DNA MER1_type 39 203 -6 629 240 160 46 chr12 136553580 136553930 -7728559 + L2 LINE L2 2924 3313 0 606 141 23 8 chr12 136554278 136554406 -7728083 + CT-rich Low_complexity Low_complexity 5 134 0 719 254 96 37 chr12 136554521 136554875 -7727614 - LTR33A LTR ERVL -8 515 141 190 294 204 21 chr12 136555115 136555350 -7727139 + L2 LINE L2 2907 3184 -129 1437 218 197 62 chr12 136555356 136556032 -7726457 - LTR41 LTR ERVL -6 767 1 282 367 64 9 chr12 136556038 136556147 -7726342 + L2 LINE L2 3140 3254 -18 2377 162 74 13 chr12 136556212 136556686 -7725803 - MLT1D LTR MaLR -2 503 1 283 320 28 33 chr12 136557111 136557305 -7725184 + MIR SINE MIR 30 215 -47 744 280 42 8 chr12 136557490 136557729 -7724760 + MIR SINE MIR 15 261 -1 236 339 117 4 chr12 136557935 136558209 -7724280 - L2 LINE L2 -159 3113 2809 1077 188 43 120 chr12 136558342 136558735 -7723754 + MLT1A1 LTR MaLR 1 363 -2 270 238 50 106 chr12 136558817 136558977 -7723512 + MLT1L LTR MaLR 40 190 -425 668 203 4 0 chr12 136559897 136560135 -7722354 + (TCCA)n Simple_repeat Simple_repeat 1 239 0 948 151 0 0 chr12 136560151 136560330 -7722159 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 544 168 16 0 chr12 136560342 136560467 -7722022 + (TCCA)n Simple_repeat Simple_repeat 2 128 0 702 219 4 4 chr12 136560533 136560789 -7721700 + (TCCA)n Simple_repeat Simple_repeat 1 256 0 302 283 108 17 chr12 136561495 136561615 -7720874 - L2 LINE L2 -24 3289 3159 1077 164 28 0 chr12 136561615 136561792 -7720697 - Tigger2 DNA MER2_type -10 2708 2527 902 138 14 7 chr12 136561791 136561929 -7720560 - Charlie3 DNA MER1_type -8 2702 2564 * 273 168 58 36 chr12 136561929 136562066 -7720423 + CT-rich Low_complexity Low_complexity 4 143 0 1672 161 7 46 chr12 136562071 136562375 -7720114 - AluJb SINE Alu -20 292 1 564 152 0 10 chr12 136562925 136563024 -7719465 + FRAM SINE Alu 66 163 -13 358 304 53 58 chr12 136563106 136563277 -7719212 - L1MC4a LINE L1 -1923 5885 5716 207 69 0 0 chr12 136563280 136563309 -7719180 + (TC)n Simple_repeat Simple_repeat 1 29 0 1857 191 91 12 chr12 136563470 136563888 -7718601 - MLT1C LTR MaLR 0 467 17 1684 189 0 10 chr12 136564154 136564467 -7718022 - AluJo SINE Alu -2 310 1 2304 91 0 0 chr12 136565497 136565793 -7716696 - AluSx SINE Alu -16 296 1 236 242 205 68 chr12 136566061 136566251 -7716238 + MIR SINE MIR 37 252 -10 466 333 94 54 chr12 136566854 136567205 -7715284 - HAL1b LINE L1 0 1348 984 1729 163 3 3 chr12 136567213 136567496 -7714993 + AluJo SINE Alu 1 283 -29 191 290 10 0 chr12 136567628 136567728 -7714761 + (TTA)n Simple_repeat Simple_repeat 3 103 0 1042 170 57 0 chr12 136567781 136567975 -7714514 - MER3 DNA MER1_type -4 205 1 705 308 49 0 chr12 136569397 136569621 -7712868 + MIR SINE MIR 25 259 -3 803 193 0 0 chr12 136569705 136569845 -7712644 + MLT1D LTR MaLR 1 140 -365 789 209 6 13 chr12 136570042 136570200 -7712289 + MER8 DNA MER2_type 1 157 -82 381 135 0 0 chr12 136570188 136570240 -7712249 - Tigger2 DNA MER2_type -2660 58 7 * 639 245 31 12 chr12 136570736 136570899 -7711590 + MIR SINE MIR 5 170 -92 1246 330 61 19 chr12 136571764 136572570 -7709919 + L2 LINE L2 2384 3232 -81 2878 251 58 7 chr12 136572613 136573615 -7708874 - L1M4 LINE L1 -2775 3371 2319 1182 279 76 16 chr12 136573618 136574252 -7708237 + L2 LINE L2 2538 3301 -12 480 248 29 36 chr12 136574482 136574619 -7707870 + MER103 DNA DNA 10 145 -21 2462 50 0 23 chr12 136574732 136575034 -7707455 + AluY SINE Alu 17 311 0 2859 169 44 13 chr12 136575305 136575826 -7706663 - L1MB3 LINE L1 -3 6180 5644 279 210 126 101 chr12 136576013 136576132 -7706357 - MLT1K LTR MaLR -71 517 396 1041 234 60 30 chr12 136576208 136576542 -7705947 - MER2 DNA MER2_type 0 344 1 535 91 13 0 chr12 136576558 136576635 -7705854 - L1P LINE L1 -1199 4947 4870 5316 82 27 4 chr12 136576635 136577326 -7705163 + L1PA10 LINE L1 5448 6156 -12 422 305 4 71 chr12 136577365 136577591 -7704898 - MLT1K LTR MaLR -375 213 3 272 211 19 96 chr12 136577680 136577784 -7704705 - L2 LINE L2 -418 2896 2801 840 290 102 16 chr12 136578430 136578899 -7703590 + MLT1K LTR MaLR 22 582 -6 3341 210 42 41 chr12 136578954 136579159 -7703330 - L1ME1 LINE L1 -10 6156 5953 2416 90 0 0 chr12 136579159 136579460 -7703029 - AluY SINE Alu -10 301 1 3341 210 42 41 chr12 136579460 136579791 -7702698 - L1ME1 LINE L1 -213 5953 5616 2535 99 47 11 chr12 136579791 136580153 -7702336 - THE1C LTR MaLR 0 375 1 3341 210 42 41 chr12 136580153 136580469 -7702020 - L1ME1 LINE L1 -550 5616 5302 322 217 0 94 chr12 136580493 136580599 -7701890 - L1ME LINE L1 -5468 602 507 344 270 33 90 chr12 136581141 136581352 -7701137 - MLT1I LTR MaLR -205 204 6 335 247 67 0 chr12 136581366 136581455 -7701034 + MER112 DNA MER1_type 157 251 -9 620 275 140 16 chr12 136581486 136581873 -7700616 - L2 LINE L2 -286 2986 2550 229 327 131 9 chr12 136582595 136582702 -7699787 + MIR SINE MIR 23 142 -66 553 269 123 9 chr12 136582880 136583107 -7699382 + LTR41 LTR ERVL 1 253 -542 596 213 68 79 chr12 136583183 136583476 -7699013 + LTR41 LTR ERVL 511 795 0 1903 119 0 101 chr12 136583755 136584091 -7698398 - AluSq SINE Alu -11 302 1 200 262 228 28 chr12 136584180 136584325 -7698164 - MIR SINE MIR -61 201 28 277 233 76 116 chr12 136584637 136584933 -7697556 - MLT1H LTR MaLR 0 549 163 421 274 7 52 chr12 136585944 136586079 -7696410 + MER91B DNA MER1_type 2 130 -60 253 285 24 65 chr12 136586227 136586350 -7696139 - L2 LINE L2 0 3272 3155 782 235 113 0 chr12 136586603 136586833 -7695656 - MER113 DNA MER1_type? -45 476 221 5493 195 16 23 chr12 136586838 136587120 -7695369 - Tigger6a DNA MER2_type -514 1083 800 2520 70 0 13 chr12 136587120 136587433 -7695056 + AluY SINE Alu 1 309 -2 5493 195 16 23 chr12 136587433 136588241 -7694248 - Tigger6a DNA MER2_type -797 800 1 1563 18 0 0 chr12 136588532 136588701 -7693788 + L1PA5 LINE L1 5982 6150 -4 1750 59 0 0 chr12 136589743 136589947 -7692542 - AluY SINE Alu -22 289 86 268 296 0 0 chr12 136590090 136590178 -7692311 + (TA)n Simple_repeat Simple_repeat 2 89 0 482 322 42 17 chr12 136590185 136590424 -7692065 - MLT1L LTR MaLR -346 269 25 186 90 45 45 chr12 136590457 136590524 -7691965 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 239 200 20 0 chr12 136590615 136590665 -7691824 - L2 LINE L2 0 3313 3263 244 337 112 5 chr12 136591762 136591949 -7690540 - L2 LINE L2 -3 3310 3104 217 333 56 0 chr12 136592000 136592090 -7690399 - MIR SINE MIR -112 150 56 1417 182 4 0 chr12 136592106 136592342 -7690147 + AluJb SINE Alu 45 281 -31 203 292 115 18 chr12 136592467 136592580 -7689909 + MIR3 SINE MIR 32 155 -53 392 261 83 19 chr12 136593082 136593239 -7689250 - MLT1K LTR MaLR -305 283 117 6773 57 1 15 chr12 136593376 136593519 -7688970 + L1PA7 LINE L1 5347 5490 -664 2828 25 0 9 chr12 136593519 136593839 -7688650 + AluYb8 SINE Alu 1 317 -1 6773 57 1 15 chr12 136593839 136594514 -7687975 + L1PA7 LINE L1 5490 6154 0 8553 119 43 39 chr12 136594516 136595567 -7686922 - Tigger1 DNA MER2_type -941 1477 432 1975 142 106 32 chr12 136595567 136595906 -7686583 + THE1B LTR MaLR 1 364 0 8553 119 43 39 chr12 136595906 136596126 -7686363 - Tigger1 DNA MER2_type -1986 432 214 378 0 0 0 chr12 136596126 136596168 -7686321 + (TAA)n Simple_repeat Simple_repeat 1 42 0 8553 119 43 39 chr12 136596168 136596305 -7686184 - Tigger1 DNA MER2_type -2204 214 58 1700 67 183 0 chr12 136596305 136596584 -7685905 + AluSx SINE Alu 1 323 0 8553 119 43 39 chr12 136596584 136596621 -7685868 - Tigger1 DNA MER2_type -2360 58 23 1180 178 33 139 chr12 136596637 136597031 -7685458 + MLT1C LTR MaLR 85 467 0 506 261 118 20 chr12 136597977 136598172 -7684317 - MIR SINE MIR -3 259 46 4373 162 102 7 chr12 136598195 136598949 -7683540 - LTR1B LTR ERV1 0 826 1 327 292 80 0 chr12 136599302 136599415 -7683074 + MIR SINE MIR 120 241 -21 2262 109 3 3 chr12 136599777 136600122 -7682367 - AluSx SINE Alu 0 345 1 349 269 13 49 chr12 136600240 136600443 -7682046 + CT-rich Low_complexity Low_complexity 1 195 0 1037 102 0 0 chr12 136601227 136601364 -7681125 - L1MA2 LINE L1 0 6304 6168 294 212 271 0 chr12 136601949 136602067 -7680422 + MIR SINE MIR 13 162 -100 200 330 148 0 chr12 136603070 136603158 -7679331 - L2 LINE L2 -24 3289 3189 23 54 0 0 chr12 136604000 136604037 -7678452 + AT_rich Low_complexity Low_complexity 1 37 0 635 256 21 91 chr12 136604118 136604328 -7678161 + MIR SINE MIR 7 198 -62 204 261 0 22 chr12 136604341 136604387 -7678102 - MIR SINE MIR -14 248 204 245 271 0 14 chr12 136604452 136604522 -7677967 + MIR SINE MIR 194 262 0 4933 228 112 22 chr12 136604632 136605196 -7677293 - L1MC4 LINE L1 -57 7985 7473 1577 191 102 35 chr12 136605196 136605567 -7676922 + MSTD LTR MaLR 1 396 0 4933 228 112 22 chr12 136605567 136606510 -7675979 - L1MC4 LINE L1 -569 7473 6342 616 284 148 18 chr12 136606551 136606780 -7675709 - MLT1I LTR MaLR -43 366 108 422 297 43 22 chr12 136606953 136607138 -7675351 - L1ME LINE L1 -311 5810 5622 206 242 297 0 chr12 136607188 136607279 -7675210 + MIR SINE MIR 125 242 -20 392 208 28 19 chr12 136607930 136608036 -7674453 - L1MB8 LINE L1 -61 6615 6509 234 0 0 0 chr12 136608036 136608062 -7674427 + (TA)n Simple_repeat Simple_repeat 2 27 0 9175 213 53 59 chr12 136608064 136611341 -7671148 - L1MB8 LINE L1 -541 6137 2878 3486 216 57 46 chr12 136611472 136612342 -7670147 - L1MB8 LINE L1 -4544 2102 1243 2114 131 0 7 chr12 136612342 136612640 -7669849 - AluSg SINE Alu -14 296 1 3486 216 57 46 chr12 136612640 136613753 -7668736 - L1MB8 LINE L1 -5403 1243 1 486 219 112 39 chr12 136614269 136614447 -7668042 - MLT1K LTR MaLR -17 571 381 314 230 18 71 chr12 136615123 136615236 -7667253 + MIR SINE MIR 129 235 -27 360 0 0 0 chr12 136615250 136615290 -7667199 + (TTA)n Simple_repeat Simple_repeat 1 40 0 452 276 32 45 chr12 136615687 136615843 -7666646 - MIR SINE MIR -13 249 96 340 303 156 42 chr12 136615861 136616214 -7666275 - L2 LINE L2 -422 2892 2500 291 79 0 0 chr12 136617398 136617436 -7665053 + tRNA-Ile-ATT tRNA tRNA 2 39 -38 264 229 84 12 chr12 136619313 136619396 -7663093 + L3 LINE CR1 738 826 -751 4431 185 8 1 chr12 136619413 136620136 -7662353 + MER44D DNA MER2_type 2 601 -4 234 0 0 0 chr12 136620186 136620212 -7662277 + (TG)n Simple_repeat Simple_repeat 1 26 0 653 288 46 68 chr12 136620329 136620759 -7661730 + Charlie8 DNA MER1_type 1 402 -2015 643 271 92 69 chr12 136620777 136621083 -7661406 + L3 LINE CR1 1066 1378 -199 501 194 31 0 chr12 136621140 136621238 -7661251 + MIR SINE MIR 58 158 -104 1779 146 8 0 chr12 136621334 136621602 -7660887 - AluJb SINE Alu -38 274 5 220 325 18 0 chr12 136621962 136622076 -7660413 + (TA)n Simple_repeat Simple_repeat 2 117 0 1958 142 158 16 chr12 136622120 136622138 -7660351 + MSTB LTR MaLR 9 23 -403 2990 112 14 34 chr12 136622138 136622179 -7660310 - MSTA LTR MaLR 0 428 388 2694 42 0 0 chr12 136622179 136622489 -7660000 + AluY SINE Alu 1 310 -1 2990 112 14 34 chr12 136622489 136622884 -7659605 - MSTA LTR MaLR -40 388 1 1958 142 158 16 chr12 136622884 136623231 -7659258 + MSTB LTR MaLR 23 426 0 349 288 93 25 chr12 136623263 136623381 -7659108 + L2 LINE L2 3147 3272 0 196 352 143 0 chr12 136623456 136623547 -7658942 + L3 LINE CR1 1430 1533 -44 614 286 70 25 chr12 136623698 136623939 -7658550 - MIR SINE MIR -2 260 9 255 31 0 0 chr12 136623999 136624031 -7658458 + (TG)n Simple_repeat Simple_repeat 2 33 0 1642 125 119 77 chr12 136624186 136624536 -7657953 - MLT1D LTR MaLR -70 435 71 1660 220 80 23 chr12 136624536 136624972 -7657517 - MLT1C LTR MaLR -1 466 6 265 233 12 70 chr12 136624975 136625061 -7657428 - MLT1D LTR MaLR -424 81 1 2474 220 67 36 chr12 136626878 136627890 -7654599 - L1ME1 LINE L1 -5 6161 5127 204 316 40 46 chr12 136628111 136628263 -7654226 + L2 LINE L2 3145 3295 -18 847 239 23 62 chr12 136628443 136628516 -7653973 - MIR SINE MIR -1 261 187 490 107 27 0 chr12 136628516 136628591 -7653898 - MADE1 DNA Mariner 0 80 4 847 239 23 62 chr12 136628591 136628776 -7653713 - MIR SINE MIR -75 187 13 184 352 0 0 chr12 136630098 136630169 -7652320 + MIR SINE MIR 185 255 -7 221 301 80 53 chr12 136630801 136630914 -7651575 - MIR3 SINE MIR -84 124 9 2579 108 3 3 chr12 136632027 136632387 -7650102 + THE1B LTR MaLR 5 364 0 331 226 210 8 chr12 136633434 136633558 -7648931 + L2 LINE L2 3162 3310 -3 20488 105 7 0 chr12 136633729 136637604 -7644885 + L1PA8 LINE L1 2271 6171 -1 213 330 45 9 chr12 136638691 136638803 -7643686 - MIR SINE MIR -87 175 60 203 333 0 0 chr12 136639333 136639399 -7643090 + (TG)n Simple_repeat Simple_repeat 1 66 0 * 302 306 11 38 chr12 136639367 136639550 -7642939 + (TATG)n Simple_repeat Simple_repeat 1 178 0 * 308 363 7 0 chr12 136639446 136639581 -7642908 + (TG)n Simple_repeat Simple_repeat 1 136 0 349 219 53 26 chr12 136639829 136639943 -7642546 - MLT1L LTR MaLR -347 268 152 805 233 154 8 chr12 136640202 136640568 -7641921 - MER57A LTR ERV1 0 403 10 7376 220 35 58 chr12 136640661 136641855 -7640634 - L1MB7 LINE L1 -105 6079 4860 1893 146 50 14 chr12 136641855 136642217 -7640272 - THE1C LTR MaLR 0 375 1 7376 220 35 58 chr12 136642217 136642512 -7639977 - L1MB7 LINE L1 -1324 4860 4560 2554 64 0 6 chr12 136642512 136642824 -7639665 + AluY SINE Alu 1 310 -1 7376 220 35 58 chr12 136642824 136643596 -7638893 - L1MB7 LINE L1 -1624 4560 3772 207 0 0 0 chr12 136643596 136643619 -7638870 + (TC)n Simple_repeat Simple_repeat 2 24 0 7376 220 35 58 chr12 136643619 136645147 -7637342 - L1MB7 LINE L1 -2412 3772 2382 2014 120 36 7 chr12 136645172 136645473 -7637016 + AluSg SINE Alu 1 310 0 231 125 21 0 chr12 136645482 136645530 -7636959 - L1MA8 LINE L1 -13 6278 6230 216 24 73 0 chr12 136645532 136645573 -7636916 + (TA)n Simple_repeat Simple_repeat 1 44 0 279 263 11 0 chr12 136645666 136645761 -7636728 - L1MB7 LINE L1 -3798 2348 2253 33 25 0 0 chr12 136645761 136645801 -7636688 + AT_rich Low_complexity Low_complexity 1 40 0 700 83 22 38 chr12 136645818 136646185 -7636304 + (TA)n Simple_repeat Simple_repeat 1 361 0 484 186 59 0 chr12 136646214 136646332 -7636157 - L1MA1 LINE L1 -17 6285 6161 287 250 76 14 chr12 136646339 136646483 -7636006 - L1M4b LINE L1 -3907 3050 2898 351 273 121 43 chr12 136646511 136646742 -7635747 - L1M4b LINE L1 -4271 2867 2619 243 162 0 59 chr12 136646830 136646898 -7635591 - L1M4b LINE L1 -4599 2539 2476 2723 141 39 6 chr12 136647107 136647590 -7634899 - L1PA16 LINE L1 -9 6157 5659 933 146 55 0 chr12 136647590 136647755 -7634734 + L1PA16 LINE L1 5476 5649 -517 2046 238 34 43 chr12 136647765 136648302 -7634187 - L1M4b LINE L1 -4599 2360 1851 228 67 0 0 chr12 136648302 136648332 -7634157 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 2046 238 34 43 chr12 136648332 136648752 -7633737 - L1M4b LINE L1 -5108 1851 1428 2432 165 115 9 chr12 136648769 136648925 -7633564 - LTR49 LTR ERV1 0 595 457 3099 25 11 0 chr12 136648925 136649288 -7633201 - L1PA4 LINE L1 -5 6150 5784 2432 165 115 9 chr12 136649288 136649669 -7632820 - LTR49 LTR ERV1 -138 457 1 4716 225 58 42 chr12 136649670 136649685 -7632804 - L1M4b LINE L1 -5440 1419 1406 1621 202 8 41 chr12 136649685 136650072 -7632417 + MLT1A2 LTR MaLR 1 374 0 4716 225 58 42 chr12 136650072 136650323 -7632166 - L1M4b LINE L1 -5453 1406 1161 2439 80 3 0 chr12 136650323 136650623 -7631866 - AluSp SINE Alu -12 301 1 4716 225 58 42 chr12 136650623 136651724 -7630765 - L1M4b LINE L1 -5698 1161 29 350 195 35 0 chr12 136651758 136651845 -7630644 - MER113 DNA MER1_type? -431 90 1 2110 128 0 0 chr12 136652300 136652643 -7629846 - AluSx SINE Alu 0 343 1 2697 100 0 13 chr12 136653569 136653949 -7628540 - THE1C LTR MaLR 0 375 1 220 329 0 0 chr12 136654205 136654281 -7628208 - L2 LINE L2 -212 3060 2985 400 251 75 53 chr12 136654507 136654694 -7627795 - MER117 DNA MER1_type -6 191 1 472 293 89 51 chr12 136654835 136655149 -7627340 + MER102b DNA MER1_type 5 330 -11 198 386 93 7 chr12 136656649 136656789 -7625700 + L2 LINE L2 3088 3239 -33 229 342 128 20 chr12 136656801 136656950 -7625539 + MIR3 SINE MIR 42 206 -2 182 278 0 19 chr12 136657284 136657338 -7625151 + MIR SINE MIR 60 112 -96 * 183 340 62 56 chr12 136657336 136657480 -7625009 - L2 LINE L2 -2 3270 3126 2227 237 134 28 chr12 136657698 136658106 -7624383 - L1MD3 LINE L1 -1610 7180 6817 2499 56 0 3 chr12 136658106 136658411 -7624078 - AluY SINE Alu -7 304 1 2227 237 134 28 chr12 136658411 136658961 -7623528 - L1MD3 LINE L1 -1973 6817 6120 327 249 92 31 chr12 136658973 136659202 -7623287 - L1MD3 LINE L1 -4454 2668 2426 1539 84 0 0 chr12 136659253 136659467 -7623022 - L1M1 LINE L1 -537 5767 5554 1826 266 30 21 chr12 136659490 136660502 -7621987 - L1MD3 LINE L1 -4739 2202 1171 19974 151 21 19 chr12 136660518 136663575 -7618914 - L1MA2 LINE L1 0 7723 4675 2099 133 12 0 chr12 136663575 136663906 -7618583 - L1PA14 LINE L1 -9 6152 5818 19974 151 21 19 chr12 136663906 136668114 -7614375 - L1MA2 LINE L1 -3048 4675 479 194 0 0 37 chr12 136668114 136668141 -7614348 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5162 60 5 0 chr12 136668141 136668791 -7613698 - L1PA7 LINE L1 -18 6136 5484 19974 151 21 19 chr12 136668791 136669220 -7613269 - L1MA2 LINE L1 -7243 480 15 722 285 97 9 chr12 136669221 136669551 -7612938 - L1MD3 LINE L1 -5246 1177 819 514 300 47 40 chr12 136669740 136670110 -7612379 - L1MD3 LINE L1 -5631 791 98 1628 84 3 101 chr12 136670325 136670622 -7611867 - MER4A LTR ERV1 0 664 397 965 228 62 22 chr12 136670666 136670990 -7611499 + L1ME1 LINE L1 5822 6158 -8 406 321 79 12 chr12 136671101 136671341 -7611148 + MIR SINE MIR 7 262 0 298 292 140 6 chr12 136672423 136672594 -7609895 - L2 LINE L2 0 3313 3120 368 275 93 22 chr12 136672820 136673212 -7609277 - MLT1L LTR MaLR 0 615 177 289 263 88 0 chr12 136673827 136673907 -7608582 + MER82 DNA MER2_type 8 94 -559 243 0 0 0 chr12 136673908 136673935 -7608554 + (CA)n Simple_repeat Simple_repeat 2 28 0 283 374 17 9 chr12 136673959 136674074 -7608415 - MIR SINE MIR -124 138 23 954 211 0 34 chr12 136674129 136674338 -7608151 + MER82 DNA MER2_type 444 645 -8 308 318 0 0 chr12 136676016 136676101 -7606388 - L2 LINE L2 -993 2321 2237 250 245 0 64 chr12 136677463 136677557 -7604932 + MIR SINE MIR 146 233 -29 201 289 0 0 chr12 136677657 136677709 -7604780 + MIR SINE MIR 3 54 -208 524 267 47 0 chr12 136677753 136677903 -7604586 + MIR SINE MIR 45 201 -61 2399 65 0 3 chr12 136677927 136678220 -7604269 + AluY SINE Alu 14 305 -6 2116 243 53 21 chr12 136678280 136678810 -7603679 + MLT1E2 LTR MaLR 80 626 0 1483 264 104 7 chr12 136678827 136679365 -7603124 + MLT1E2-int LTR MaLR 18 607 -764 3944 222 60 32 chr12 136679577 136680881 -7601608 + L1MDb LINE L1 743 2102 -4304 3661 24 0 0 chr12 136680881 136681299 -7601190 - L1PA2 LINE L1 0 6155 5738 3944 222 60 32 chr12 136681299 136681399 -7601090 + L1MDb LINE L1 2102 2198 -4208 313 228 38 114 chr12 136681402 136681586 -7600903 + L1MD2 LINE L1 6180 6349 -10 1152 245 70 14 chr12 136681743 136682114 -7600375 + MER113 DNA MER1_type? 126 517 -4 186 287 193 7 chr12 136682197 136682347 -7600142 + MIR SINE MIR 10 187 -75 281 268 55 39 chr12 136682426 136682553 -7599936 + MIR SINE MIR 76 204 -58 2131 210 52 26 chr12 136684571 136685067 -7597422 - MLT1E2 LTR MaLR -7 619 111 21 0 0 0 chr12 136688842 136688863 -7593626 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr12 136690315 136690348 -7592141 + (TG)n Simple_repeat Simple_repeat 1 33 0 2004 131 0 0 chr12 136692975 136693257 -7589232 + AluSq SINE Alu 31 312 -1 2017 107 31 14 chr12 136696812 136697101 -7585388 + AluSx SINE Alu 1 294 -18 25 0 0 0 chr12 136699151 136699176 -7583313 + AT_rich Low_complexity Low_complexity 1 25 0 587 176 0 0 chr12 136699698 136699800 -7582689 - L1MC1 LINE L1 0 6333 6232 2017 233 96 8 chr12 136699830 136700363 -7582126 - L1MB8 LINE L1 0 6178 5599 471 328 48 11 chr12 136700379 136700565 -7581924 + MER76 LTR ERV 380 572 -116 1342 264 83 25 chr12 136700590 136701343 -7581146 - L1MEc LINE L1 -3603 2779 2011 2511 85 0 0 chr12 136701629 136701960 -7580529 - L1PA7 LINE L1 -5 6149 5819 366 23 0 0 chr12 136701974 136702017 -7580472 + (CA)n Simple_repeat Simple_repeat 2 44 0 1926 288 34 15 chr12 136702097 136702777 -7579712 - L1MEc LINE L1 -4606 1778 1086 242 233 23 47 chr12 136702771 136702857 -7579632 + L1MC4 LINE L1 6620 6703 -1339 * 1185 238 161 89 chr12 136702838 136703894 -7578595 + L1ME2 LINE L1 1907 3235 -2980 373 214 11 34 chr12 136703894 136703983 -7578506 + MER58B DNA MER1_type 254 340 -1 1185 238 161 89 chr12 136703983 136704547 -7577942 + L1ME2 LINE L1 3235 3757 -2458 2258 108 10 0 chr12 136704557 136704852 -7577637 + AluSg SINE Alu 1 298 -12 2919 231 61 44 chr12 136704852 136706025 -7576464 + L1ME2 LINE L1 4355 5506 -727 3274 82 11 2 chr12 136706025 136706474 -7576015 + L1PA13 LINE L1 5711 6163 0 2919 231 61 44 chr12 136706474 136707079 -7575410 + L1ME2 LINE L1 5506 6168 -65 2356 92 3 0 chr12 136707079 136707374 -7575115 + AluSg SINE Alu 1 296 -14 2919 231 61 44 chr12 136707374 136707415 -7575074 + L1ME2 LINE L1 6168 6207 -26 621 289 73 18 chr12 136710008 136710281 -7572208 - MLT1K LTR MaLR 0 588 301 851 109 35 15 chr12 136710834 136711646 -7570843 + (ATG)n Simple_repeat Simple_repeat 1 828 0 740 114 23 34 chr12 136711672 136711847 -7570642 + (ATG)n Simple_repeat Simple_repeat 1 173 0 413 118 64 0 chr12 136711868 136711978 -7570511 + (ATG)n Simple_repeat Simple_repeat 1 117 0 478 333 79 0 chr12 136712382 136712571 -7569918 - MIR SINE MIR -9 253 50 765 265 99 2 chr12 136712743 136713092 -7569397 + L2 LINE L2 2634 3014 -299 299 301 38 45 chr12 136714574 136714707 -7567782 + Charlie8 DNA MER1_type 26 157 -2260 534 301 98 31 chr12 136714809 136715197 -7567292 - L2 LINE L2 0 3313 2900 227 299 29 44 chr12 136715369 136715506 -7566983 - MLT1I LTR MaLR -270 139 5 586 241 38 47 chr12 136716455 136716667 -7565822 - MIR SINE MIR -19 243 34 21 57 0 0 chr12 136717332 136717367 -7565122 + AT_rich Low_complexity Low_complexity 1 35 0 620 221 46 0 chr12 136718084 136718215 -7564274 - MER74C LTR ERVL 0 460 324 1238 201 29 11 chr12 136718522 136718800 -7563689 - MER74C LTR ERVL -166 294 12 546 308 50 90 chr12 136719690 136720716 -7561773 + HERVL LTR ERVL 3289 4273 -1212 690 296 80 18 chr12 136720720 136721119 -7561370 - LTR16B LTR ERVL 0 464 41 891 193 6 39 chr12 136722173 136722354 -7560135 + FAM SINE Alu 1 175 0 1947 146 0 34 chr12 136722354 136722676 -7559813 + AluJo SINE Alu 1 311 -1 324 275 92 0 chr12 136722860 136722980 -7559509 + LTR16B LTR ERVL 322 452 -12 532 257 65 75 chr12 136724271 136724481 -7558008 - L1MC5 LINE L1 -54 7907 7699 2259 111 0 0 chr12 136724481 136724778 -7557711 + AluSc SINE Alu 1 297 -12 532 257 65 75 chr12 136724778 136724874 -7557615 - L1MC5 LINE L1 -262 7699 7604 1049 221 49 18 chr12 136724905 136725193 -7557296 - L1ME LINE L1 -607 5559 5278 2088 113 0 3 chr12 136725371 136725687 -7556802 + AluSx SINE Alu 1 315 0 352 323 55 69 chr12 136725858 136726381 -7556108 - L1ME LINE L1 -1541 4605 4090 231 88 0 0 chr12 136726436 136726470 -7556019 + (TG)n Simple_repeat Simple_repeat 2 35 0 347 261 66 40 chr12 136726511 136726737 -7555752 - L1ME LINE L1 -2191 3955 3724 1721 180 14 0 chr12 136726836 136727130 -7555359 + AluSx SINE Alu 1 298 -14 852 257 179 28 chr12 136727518 136727699 -7554790 + L2 LINE L2 1092 1244 -2070 1836 147 70 20 chr12 136727699 136728054 -7554435 + THE1C LTR MaLR 2 374 -1 852 257 179 28 chr12 136728054 136728331 -7554158 + L2 LINE L2 1244 1619 -1695 439 317 126 16 chr12 136728307 136728689 -7553800 + L2 LINE L2 2871 3294 -19 * 1734 229 11 16 chr12 136728821 136729197 -7553292 - MLT1A2 LTR MaLR 0 374 1 249 128 0 0 chr12 136729454 136729501 -7552988 + (TC)n Simple_repeat Simple_repeat 2 48 0 184 299 124 29 chr12 136729739 136729980 -7552509 - L2 LINE L2 -68 3245 2982 2046 126 134 8 chr12 136730118 136730498 -7551991 + MSTA LTR MaLR 1 428 0 403 287 17 9 chr12 136732814 136732929 -7549560 - MLT1L LTR MaLR -183 432 317 291 28 0 0 chr12 136732931 136732967 -7549522 + (TG)n Simple_repeat Simple_repeat 2 37 0 259 182 182 15 chr12 136733273 136733339 -7549150 - MLT1L LTR MaLR -535 80 4 249 324 0 0 chr12 136733341 136733409 -7549080 - MIR SINE MIR -114 148 81 768 238 70 47 chr12 136733441 136733827 -7548662 - LTR52 LTR ERVL -26 395 1 23 0 0 0 chr12 136734522 136734545 -7547944 + AT_rich Low_complexity Low_complexity 1 23 0 1759 149 12 104 chr12 136735060 136735306 -7547183 - MLT1A1 LTR MaLR 0 365 169 2575 58 0 3 chr12 136735306 136735615 -7546874 - AluY SINE Alu -3 308 1 1759 149 12 104 chr12 136735615 136735770 -7546719 - MLT1A1 LTR MaLR -196 169 1 2240 105 0 7 chr12 136736572 136736867 -7545622 - AluSx SINE Alu -19 293 1 551 284 118 49 chr12 136737187 136737400 -7545089 + MLT1L LTR MaLR 69 266 -349 200 33 0 33 chr12 136737400 136737430 -7545059 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 551 284 118 49 chr12 136737430 136737607 -7544882 + MLT1L LTR MaLR 266 486 -129 311 90 66 66 chr12 136737918 136738040 -7544449 + (TTAA)n Simple_repeat Simple_repeat 1 122 0 21 0 0 0 chr12 136738150 136738171 -7544318 + AT_rich Low_complexity Low_complexity 1 21 0 620 26 13 0 chr12 136739403 136739481 -7543008 + (GA)n Simple_repeat Simple_repeat 2 80 0 1878 236 35 75 chr12 136739689 136739952 -7542537 - L1MD2 LINE L1 -20 6339 6067 2137 135 3 0 chr12 136739952 136740263 -7542226 - AluSq SINE Alu -1 312 1 1878 236 35 75 chr12 136740263 136740656 -7541833 - L1MD2 LINE L1 -292 6067 5709 260 366 52 8 chr12 136741479 136741613 -7540876 - L2 LINE L2 0 3272 3133 2325 104 0 0 chr12 136742429 136742727 -7539762 + AluSc SINE Alu 1 298 -11 2109 164 135 2 chr12 136743109 136743553 -7538936 + MLT1D LTR MaLR 1 503 -2 350 300 80 36 chr12 136743868 136744142 -7538347 + MER115 DNA AcHobo 409 4031 0 180 0 0 0 chr12 136744653 136744673 -7537816 + (CAATT)n Simple_repeat Simple_repeat 1 20 0 181 274 36 60 chr12 136744713 136744753 -7537736 - L2 LINE L2 -50 3222 3183 1478 203 44 79 chr12 136744753 136745235 -7537254 + MLT1C LTR MaLR 3 467 0 181 274 36 60 chr12 136745235 136745278 -7537211 - L2 LINE L2 -89 3183 3141 248 250 24 36 chr12 136746155 136746239 -7536250 + MIR SINE MIR 70 152 -56 328 309 16 0 chr12 136746307 136746430 -7536059 - MER103 DNA DNA -1 165 41 241 236 14 42 chr12 136746578 136746650 -7535839 + T-rich Low_complexity Low_complexity 2 71 0 260 293 86 21 chr12 136746680 136746820 -7535669 + L2 LINE L2 2597 2745 -569 197 365 62 11 chr12 136746900 136747078 -7535411 + L2 LINE L2 2876 3062 -210 2543 142 36 10 chr12 136747287 136747702 -7534787 + MSTB LTR MaLR 1 426 0 232 345 27 9 chr12 136748231 136748341 -7534148 + MLT1K LTR MaLR 137 248 -340 342 0 0 0 chr12 136748370 136748408 -7534081 + (TG)n Simple_repeat Simple_repeat 2 39 0 1292 218 72 21 chr12 136748519 136748536 -7533953 - MER92C LTR ERV1 -2 552 537 1540 179 0 36 chr12 136748536 136748843 -7533646 + AluJo SINE Alu 13 308 -4 1292 218 72 21 chr12 136748843 136749160 -7533329 - MER92C LTR ERV1 -17 537 201 1050 165 101 0 chr12 136749174 136749362 -7533127 - MSTA LTR MaLR -221 207 1 284 214 0 0 chr12 136749362 136749415 -7533074 + MLT1K LTR MaLR 499 551 -37 2697 97 6 0 chr12 136749417 136749778 -7532711 + THE1B LTR MaLR 1 363 -1 2233 190 24 31 chr12 136749946 136749988 -7532501 - MLT1C LTR MaLR 0 467 426 2354 103 0 0 chr12 136749988 136750289 -7532200 + AluSc SINE Alu 1 301 -8 2233 190 24 31 chr12 136750289 136750704 -7531785 - MLT1C LTR MaLR -41 426 13 408 273 168 14 chr12 136751286 136751506 -7530983 + MER102a DNA MER1_type 62 315 -15 594 37 0 12 chr12 136751514 136751595 -7530894 - L1PA3 LINE L1 -3 6152 6073 468 292 17 17 chr12 136751625 136751803 -7530686 + MIR SINE MIR 15 192 -70 933 193 0 19 chr12 136753690 136753851 -7528638 - FRAM SINE Alu -19 157 1 615 250 0 0 chr12 136754005 136754305 -7528184 + (TG)n Simple_repeat Simple_repeat 1 300 0 478 262 146 58 chr12 136756044 136756338 -7526151 + MLT1J2 LTR MaLR 1 320 -130 258 128 0 0 chr12 136756386 136756425 -7526064 - MLT1B LTR MaLR -3 387 349 531 197 98 0 chr12 136756432 136756554 -7525935 - MLT1B LTR MaLR -256 134 1 341 164 0 154 chr12 136756733 136756837 -7525652 - L1MC4 LINE L1 -1341 6701 6614 239 152 0 0 chr12 136756838 136756884 -7525605 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 674 210 51 11 chr12 136757202 136757378 -7525111 + MER53 DNA DNA 5 187 -2 1966 163 3 10 chr12 136757739 136758052 -7524437 - AluJb SINE Alu -1 311 1 4070 100 13 49 chr12 136758138 136758767 -7523722 + LTR14B LTR ERVK 3 608 0 2163 149 8 37 chr12 136758940 136759315 -7523174 - THE1B LTR MaLR 0 364 1 370 235 0 20 chr12 136759375 136759473 -7523016 - MLT1K LTR MaLR -45 543 448 223 299 0 46 chr12 136759565 136759652 -7522837 - MIR SINE MIR -158 104 22 3569 167 5 18 chr12 136759695 136759874 -7522615 + Tigger1 DNA MER2_type 1 181 -2237 2167 122 0 0 chr12 136759874 136760168 -7522321 - AluSc SINE Alu -15 294 1 3569 167 5 18 chr12 136760168 136760593 -7521896 + Tigger1 DNA MER2_type 181 597 -1821 707 194 0 0 chr12 136760587 136760711 -7521778 + Tigger1 DNA MER2_type 6 129 -2289 * 11643 123 14 35 chr12 136760702 136761016 -7521473 + Tigger1 DNA MER2_type 569 888 -1530 2189 113 0 7 chr12 136761016 136761307 -7521182 + AluSg SINE Alu 1 289 -21 11643 123 14 35 chr12 136761307 136762391 -7520098 + Tigger1 DNA MER2_type 888 1918 -500 15278 26 0 0 chr12 136762391 136764926 -7517563 + L1PA3 LINE L1 3615 6152 -3 11643 123 14 35 chr12 136764926 136765417 -7517072 + Tigger1 DNA MER2_type 1918 2418 0 1099 224 94 43 chr12 136765497 136765868 -7516621 - MER74A LTR ERVL -95 463 74 23 0 0 0 chr12 136766722 136766745 -7515744 + AT_rich Low_complexity Low_complexity 1 23 0 2121 129 0 10 chr12 136766745 136767054 -7515435 + AluSx SINE Alu 1 306 -6 780 267 83 47 chr12 136767137 136767414 -7515075 - MLT1J2 LTR MaLR 0 450 164 598 260 132 40 chr12 136767426 136767730 -7514759 + MLT1J2 LTR MaLR 1 332 -118 782 218 171 5 chr12 136767730 136767941 -7514548 + MLT1C-int LTR MaLR 1126 1371 0 1233 196 186 35 chr12 136767943 136768128 -7514361 + MLT1C LTR MaLR 3 159 -308 2111 118 0 0 chr12 136768128 136768407 -7514082 + AluSx SINE Alu 1 279 -33 1233 196 186 35 chr12 136768407 136768597 -7513892 + MLT1C LTR MaLR 159 435 -32 1423 179 25 68 chr12 136768597 136768725 -7513764 + Tigger7 DNA MER2_type 1 133 -600 2439 82 0 0 chr12 136768725 136769041 -7513448 + L1PA13 LINE L1 5846 6161 -2 1423 179 25 68 chr12 136769041 136769191 -7513298 + Tigger7 DNA MER2_type 133 267 -466 579 179 0 0 chr12 136769188 136769283 -7513206 + Tigger7 DNA MER2_type 2488 2582 -5 * 2258 108 44 36 chr12 136769289 136769650 -7512839 - THE1B LTR MaLR 0 364 1 236 232 86 66 chr12 136769773 136769924 -7512565 + Charlie8 DNA MER1_type 64 217 -2200 235 289 24 12 chr12 136770060 136770143 -7512346 + MLT1C LTR MaLR 77 160 -307 591 53 0 0 chr12 136771227 136771302 -7511187 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 607 269 96 49 chr12 136771396 136771720 -7510769 - MLT1K LTR MaLR -11 577 239 2194 121 13 0 chr12 136771984 136772290 -7510199 - AluSg SINE Alu 0 310 1 4000 175 12 29 chr12 136772664 136773465 -7509024 + L1MA10 LINE L1 5546 6333 -1 383 289 115 6 chr12 136773690 136773846 -7508643 + MER91A DNA MER1_type 14 186 -10 22 56 0 0 chr12 136774815 136774851 -7507638 + AT_rich Low_complexity Low_complexity 1 36 0 287 303 50 34 chr12 136775112 136775231 -7507258 + MER91C DNA MER1_type 18 138 -2 194 405 40 0 chr12 136775310 136775436 -7507053 - L2 LINE L2 -15 3257 3127 1748 110 118 8 chr12 136775745 136776028 -7506461 - AluSg SINE Alu 0 311 1 310 159 136 11 chr12 136776163 136776251 -7506238 - L1MB1 LINE L1 -60 6108 6010 1055 184 31 43 chr12 136776258 136776514 -7505975 - L1MC3 LINE L1 -25 7760 7508 2155 134 0 7 chr12 136776525 136776824 -7505665 - AluSx SINE Alu -15 297 1 1562 158 28 78 chr12 136776879 136777240 -7505249 + MER7A DNA MER2_type 2 342 -4 266 252 117 27 chr12 136777396 136777507 -7504982 - MLT1I LTR MaLR -196 213 93 1508 180 13 20 chr12 136777932 136778237 -7504252 + L1MA9 LINE L1 6010 6312 0 508 244 19 31 chr12 136778541 136778701 -7503788 - MER104 DNA Tc2 -1 179 22 28 86 0 0 chr12 136778701 136778771 -7503718 + AT_rich Low_complexity Low_complexity 1 70 0 1962 104 0 0 chr12 136778899 136779149 -7503340 + AluSx SINE Alu 1 250 -62 6040 103 4 2 chr12 136779154 136779988 -7502501 - L1P3 LINE L1 -5625 836 2 2284 270 35 23 chr12 136780030 136780826 -7501663 - L1MC4a LINE L1 -295 7513 6708 1639 145 145 35 chr12 136780826 136781164 -7501325 + THE1C LTR MaLR 1 375 0 9937 142 11 24 chr12 136781166 136782757 -7499732 + THE1C-int LTR MaLR 3 1573 -7 2031 151 55 27 chr12 136782763 136783128 -7499361 + THE1C LTR MaLR 1 375 0 635 186 0 0 chr12 136783128 136783235 -7499254 - L1MC4a LINE L1 -1096 6712 6606 38 39 0 39 chr12 136783378 136783456 -7499033 + AT_rich Low_complexity Low_complexity 1 75 0 1445 76 16 0 chr12 136783570 136783755 -7498734 - AluY SINE Alu -9 302 115 37 39 0 0 chr12 136783755 136783806 -7498683 + AT_rich Low_complexity Low_complexity 1 51 0 1097 62 0 0 chr12 136783806 136783935 -7498554 - AluY SINE Alu -182 129 1 276 91 0 0 chr12 136783961 136784005 -7498484 + (TC)n Simple_repeat Simple_repeat 2 45 0 645 270 99 0 chr12 136784028 136784239 -7498250 - HAL1 LINE L1 -1658 849 618 316 306 58 16 chr12 136784422 136784543 -7497946 - HAL1 LINE L1 -2190 317 192 239 265 38 68 chr12 136784657 136784789 -7497700 - HAL1 LINE L1 -2371 136 9 2466 39 0 3 chr12 136785346 136785665 -7496824 - AluY SINE Alu 0 318 1 24 53 0 0 chr12 136785973 136786011 -7496478 + AT_rich Low_complexity Low_complexity 1 38 0 2356 95 0 0 chr12 136786284 136786589 -7495900 - AluY SINE Alu -6 305 1 2320 92 3 7 chr12 136786917 136787212 -7495277 + AluSx SINE Alu 1 294 -18 2228 107 3 0 chr12 136787392 136787683 -7494806 - AluSx SINE Alu -20 292 1 714 226 181 0 chr12 136788239 136788416 -7494073 - MER3 DNA MER1_type 0 209 1 291 269 0 0 chr12 136788644 136788711 -7493778 - MER3 DNA MER1_type -142 67 1 4587 133 8 11 chr12 136788948 136789652 -7492837 + L1MA4A LINE L1 5598 6299 -4 656 251 29 0 chr12 136790916 136791087 -7491402 + MER53 DNA DNA 14 189 0 1785 114 114 7 chr12 136791271 136791551 -7490938 - AluSg SINE Alu 0 310 1 291 298 50 41 chr12 136791898 136792019 -7490470 + L2 LINE L2 3151 3272 0 201 39 0 0 chr12 136792072 136792098 -7490391 + (TG)n Simple_repeat Simple_repeat 1 26 0 248 227 0 103 chr12 136792395 136792492 -7489997 - MLT1J LTR MaLR -324 187 101 1265 244 96 85 chr12 136792622 136793184 -7489305 + MLT1E LTR MaLR 23 590 -3 2066 128 0 0 chr12 136793282 136793578 -7488911 + AluSx SINE Alu 1 296 -16 2231 191 41 80 chr12 136793738 136794276 -7488213 - LTR53 LTR ERVL 0 519 3 2070 141 0 6 chr12 136795341 136795653 -7486836 - AluSx SINE Alu -2 310 1 238 162 0 0 chr12 136796110 136796147 -7486342 - MLT1J LTR MaLR -478 115 79 3977 67 24 6 chr12 136796168 136796675 -7485814 - L1PA7 LINE L1 -4 6150 5635 225 167 0 0 chr12 136796708 136796750 -7485739 - L1MD2 LINE L1 -177 6182 6141 1024 169 0 5 chr12 136796761 136796945 -7485544 - L1MB3 LINE L1 -1 6182 6000 2144 111 7 3 chr12 136797126 136797423 -7485066 + AluSc SINE Alu 1 298 -11 201 258 30 0 chr12 136797582 136797633 -7484856 - MER5A DNA MER1_type -8 181 129 347 237 109 58 chr12 136797633 136797789 -7484700 - MER5B DNA MER1_type 0 178 15 436 233 0 0 chr12 136797832 136797922 -7484567 - MER5A DNA MER1_type -99 90 1 748 231 12 6 chr12 136798035 136798195 -7484294 - L1M4c LINE L1 -6195 189 29 333 221 12 12 chr12 136798276 136798362 -7484127 + L1MB8 LINE L1 6093 6178 0 380 301 0 0 chr12 136798370 136798473 -7484016 + L1ME1 LINE L1 6060 6162 -4 1870 126 0 0 chr12 136798495 136798756 -7483733 + AluSx SINE Alu 26 286 -26 180 0 0 0 chr12 136798770 136798790 -7483699 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1842 232 144 34 chr12 136798885 136799419 -7483070 - MLT1E LTR MaLR 0 593 1 1607 176 0 42 chr12 136799530 136799842 -7482647 + AluJo SINE Alu 1 299 -13 547 273 18 12 chr12 136799950 136800112 -7482377 - LTR16C LTR ERVL 0 491 329 413 299 129 67 chr12 136800112 136800530 -7481959 - MLT1H LTR MaLR 0 549 106 687 246 111 21 chr12 136800548 136800882 -7481607 + L1MEc LINE L1 762 1125 -5271 529 223 14 3 chr12 136800876 136800995 -7481494 - L1M2 LINE L1 -616 5550 5427 * 1117 137 6 6 chr12 136800998 136801173 -7481316 - FRAM SINE Alu 0 176 2 1503 243 43 84 chr12 136801181 136801882 -7480607 - L1M4 LINE L1 -743 5403 4732 245 50 0 0 chr12 136802872 136802912 -7479577 + L1PA3 LINE L1 6116 6155 0 642 203 124 7 chr12 136803226 136803379 -7479110 - MER63A DNA MER1_type -28 182 12 23 0 0 0 chr12 136803437 136803460 -7479029 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr12 136803588 136803621 -7478868 + (TG)n Simple_repeat Simple_repeat 1 33 0 311 294 94 11 chr12 136804086 136804266 -7478223 - MIR SINE MIR -55 207 13 2447 170 57 0 chr12 136804354 136804759 -7477730 - MSTA LTR MaLR 0 428 1 1466 210 67 79 chr12 136807335 136807390 -7475099 + MLT1D LTR MaLR 1 55 -450 2016 177 84 5 chr12 136807390 136807757 -7474732 + MSTD LTR MaLR 1 396 0 1466 210 67 79 chr12 136807757 136808210 -7474279 + MLT1D LTR MaLR 55 503 -2 1233 213 20 8 chr12 136808244 136808601 -7473888 + L1MDb LINE L1 615 1036 -5507 527 297 39 9 chr12 136808589 136808821 -7473668 + L1MDb LINE L1 2243 2481 -4059 * 3611 236 90 26 chr12 136808866 136811192 -7471297 + L1MDa LINE L1 1067 3549 -2991 1900 165 0 16 chr12 136811192 136811508 -7470981 + AluSx SINE Alu 1 311 -1 3611 236 90 26 chr12 136811508 136811567 -7470922 + L1MDa LINE L1 3549 3603 -2937 2494 57 7 0 chr12 136811866 136812166 -7470323 + AluY SINE Alu 1 302 -9 370 310 53 3 chr12 136813158 136813358 -7469131 + MIR SINE MIR 43 250 -12 206 281 18 61 chr12 136813387 136813501 -7468988 + MIR SINE MIR 148 256 -6 237 162 44 15 chr12 136814343 136814411 -7468078 + (CATA)n Simple_repeat Simple_repeat 3 72 0 408 220 114 106 chr12 136815250 136815414 -7467075 - MLT1K LTR MaLR -25 563 395 2126 117 34 0 chr12 136815414 136815705 -7466784 - AluSx SINE Alu -11 301 1 408 220 114 106 chr12 136815705 136815776 -7466713 - MLT1K LTR MaLR -193 395 326 785 246 49 15 chr12 136816015 136816218 -7466271 + MIR SINE MIR 32 241 -21 606 259 31 54 chr12 136816335 136816559 -7465930 - MIR SINE MIR -31 231 13 2132 112 0 10 chr12 136817011 136817307 -7465182 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr12 136817317 136817339 -7465150 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 2221 131 0 0 chr12 136817416 136817722 -7464767 - AluSx SINE Alu -6 306 1 342 0 0 0 chr12 136818688 136818726 -7463763 + (TG)n Simple_repeat Simple_repeat 1 38 0 251 249 144 37 chr12 136818907 136819029 -7463460 + MIR SINE MIR 56 184 -63 246 174 0 0 chr12 136819512 136819558 -7462931 + T-rich Low_complexity Low_complexity 1 46 0 1644 203 121 21 chr12 136819617 136820006 -7462483 + MLT1C LTR MaLR 40 467 0 606 291 42 19 chr12 136820162 136820375 -7462114 + MIR SINE MIR 19 236 -26 633 250 224 13 chr12 136820545 136820849 -7461640 - MLT1J LTR MaLR -136 375 8 2552 68 0 0 chr12 136821119 136821429 -7461060 - AluY SINE Alu -1 310 1 2068 135 6 3 chr12 136822042 136822354 -7460135 + AluSq SINE Alu 1 313 0 1596 185 81 26 chr12 136822474 136822614 -7459875 + MLT1A1 LTR MaLR 1 132 -233 2857 95 17 0 chr12 136822614 136822972 -7459517 + THE1B LTR MaLR 1 364 0 1596 185 81 26 chr12 136822972 136823177 -7459312 + MLT1A1 LTR MaLR 132 365 0 23 54 0 0 chr12 136823260 136823297 -7459192 + AT_rich Low_complexity Low_complexity 1 37 0 2377 167 64 9 chr12 136823461 136823898 -7458591 + LOR1b LTR ERV1 1 461 0 183 347 80 13 chr12 136824644 136824869 -7457620 - L2 LINE L2 -557 2757 2518 296 228 118 0 chr12 136825021 136825157 -7457332 - MER104 DNA Tc2 -26 154 3 1274 285 140 46 chr12 136825456 136825895 -7456594 - HAL1 LINE L1 -12 2495 2099 2691 142 36 10 chr12 136825895 136826310 -7456179 - MSTB LTR MaLR 0 426 1 1274 285 140 46 chr12 136826310 136826790 -7455699 - HAL1 LINE L1 -408 2099 1489 1002 189 51 60 chr12 136826830 136827047 -7455442 - MER20 DNA MER1_type -4 215 1 414 329 75 44 chr12 136827453 136827815 -7454674 - MLT1J1 LTR MaLR -8 438 66 2301 99 0 13 chr12 136828138 136828450 -7454039 - AluSc SINE Alu -1 308 1 327 333 65 8 chr12 136830755 136830878 -7451611 - L2 LINE L2 -2 3270 3141 459 322 55 10 chr12 136830948 136831147 -7451342 + MIR SINE MIR 55 262 0 1610 159 0 80 chr12 136831253 136831579 -7450910 - AluJb SINE Alu -12 300 1 718 232 57 5 chr12 136832193 136832380 -7450109 - L1MA9 LINE L1 -2 6298 6098 523 231 0 154 chr12 136833413 136833557 -7448932 - MER5B DNA MER1_type -1 177 73 2263 88 0 3 chr12 136833557 136833841 -7448648 - AluSc SINE Alu -26 283 1 523 231 0 154 chr12 136833841 136833904 -7448585 - MER5B DNA MER1_type -105 73 2 1932 163 3 0 chr12 136834136 136834436 -7448053 - AluJo SINE Alu -7 305 5 3517 184 82 41 chr12 136834794 136835314 -7447175 - L1MB7 LINE L1 -14 6170 5673 2584 46 0 3 chr12 136835314 136835617 -7446872 - AluY SINE Alu -9 302 1 3517 184 82 41 chr12 136835617 136835728 -7446761 - L1MB7 LINE L1 -511 5673 5568 2740 153 9 16 chr12 136835728 136836153 -7446336 - MSTB LTR MaLR -4 422 1 3517 184 82 41 chr12 136836153 136836364 -7446125 - L1MB7 LINE L1 -616 5568 5275 2333 92 7 0 chr12 136836364 136836659 -7445830 + AluSc SINE Alu 1 297 -12 3517 184 82 41 chr12 136836659 136836725 -7445764 - L1MB7 LINE L1 -909 5275 5213 323 231 193 74 chr12 136836730 136836818 -7445671 + HAL1 LINE L1 772 848 -1659 2518 44 0 3 chr12 136836818 136837116 -7445373 + AluY SINE Alu 1 297 -14 323 231 193 74 chr12 136837116 136837296 -7445193 + HAL1 LINE L1 848 1072 -1435 1121 282 138 39 chr12 136837434 136837752 -7444737 - L2 LINE L2 0 3313 3028 1873 108 75 17 chr12 136837752 136838047 -7444442 - AluSp SINE Alu -1 312 1 1121 282 138 39 chr12 136838047 136838574 -7443915 - L2 LINE L2 -285 3028 2357 405 0 0 0 chr12 136838574 136838619 -7443870 + (TG)n Simple_repeat Simple_repeat 2 46 0 1121 282 138 39 chr12 136838619 136838710 -7443779 - L2 LINE L2 -956 2357 2276 229 268 0 18 chr12 136838862 136838918 -7443571 - L2 LINE L2 -816 2498 2444 226 283 0 0 chr12 136838987 136839040 -7443449 + CT-rich Low_complexity Low_complexity 3 55 0 2664 48 0 3 chr12 136839148 136839460 -7443029 - AluY SINE Alu 0 311 1 240 340 41 54 chr12 136839641 136839788 -7442701 - L2 LINE L2 -223 3049 2905 591 207 109 109 chr12 136839967 136840223 -7442266 - L1MC4 LINE L1 -16 8026 7771 279 54 0 0 chr12 136840679 136840716 -7441773 + (TG)n Simple_repeat Simple_repeat 2 38 0 328 264 132 0 chr12 136840789 136840895 -7441594 + L2 LINE L2 3188 3307 -6 2123 125 0 0 chr12 136841155 136841443 -7441046 - AluSx SINE Alu -24 288 1 405 314 117 38 chr12 136842907 136843172 -7439317 + MLT1J LTR MaLR 144 443 -68 2281 104 3 0 chr12 136843172 136843480 -7439009 + AluSg SINE Alu 1 309 -1 405 314 117 38 chr12 136843480 136843555 -7438934 + MLT1J LTR MaLR 443 511 0 235 229 16 0 chr12 136843775 136843836 -7438653 - L1ME4a LINE L1 -71 6050 5989 234 176 0 0 chr12 136843896 136843947 -7438542 + (CA)n Simple_repeat Simple_repeat 1 51 0 521 0 0 17 chr12 136844052 136844111 -7438378 - L1PA5 LINE L1 -14 6140 6083 1322 296 78 35 chr12 136844365 136844556 -7437933 + L2 LINE L2 2359 2540 -773 2029 184 60 81 chr12 136844556 136845072 -7437417 + MLT1D LTR MaLR 1 505 0 1322 296 78 35 chr12 136845072 136845703 -7436786 + L2 LINE L2 2540 3231 -82 236 337 0 20 chr12 136845808 136845906 -7436583 + MIR SINE MIR 166 261 -1 404 284 39 18 chr12 136846205 136846392 -7436097 - L1ME4a LINE L1 -247 5874 5685 228 286 32 0 chr12 136846690 136846749 -7435740 - L2 LINE L2 0 3313 3253 1015 206 0 11 chr12 136846749 136846933 -7435556 + MER5A DNA MER1_type 3 184 -5 2216 97 0 7 chr12 136846958 136847256 -7435233 + AluSq SINE Alu 5 300 -13 310 261 109 48 chr12 136847259 136847424 -7435065 - L2 LINE L2 -61 3252 3078 204 97 0 0 chr12 136847654 136847685 -7434804 + (TG)n Simple_repeat Simple_repeat 1 31 0 2249 80 21 0 chr12 136848685 136848971 -7433518 + AluY SINE Alu 1 292 -19 21 36 0 0 chr12 136849267 136849295 -7433194 + AT_rich Low_complexity Low_complexity 1 28 0 261 206 28 122 chr12 136850435 136850506 -7431983 - Charlie8 DNA MER1_type -2195 222 163 2126 110 14 10 chr12 136850506 136850797 -7431692 - AluSc SINE Alu -17 292 1 261 206 28 122 chr12 136850797 136850832 -7431657 - Charlie8 DNA MER1_type -2254 163 126 1841 198 154 8 chr12 136850832 136851293 -7431196 + MER77 LTR ERV1 10 602 -3 487 333 154 20 chr12 136851725 136852115 -7430374 - L2 LINE L2 0 3313 2872 487 62 78 0 chr12 136852123 136852187 -7430302 + MER77 LTR ERV1 10 78 -527 230 214 0 0 chr12 136852237 136852279 -7430210 + MER77 LTR ERV1 218 259 -346 461 224 29 88 chr12 136852282 136852487 -7430002 - L2 LINE L2 -432 2882 2690 1283 183 18 131 chr12 136852712 136852979 -7429510 - MLT1A1 LTR MaLR 0 365 151 1866 117 0 0 chr12 136852979 136853255 -7429234 + AluSg SINE Alu 34 309 0 1283 183 18 131 chr12 136853255 136853369 -7429120 - MLT1A1 LTR MaLR -214 151 26 494 256 8 0 chr12 136853395 136853516 -7428973 + MLT2B1 LTR ERVL 1 122 -398 2145 92 0 7 chr12 136853516 136853842 -7428647 + AluY SINE Alu 1 324 0 783 307 103 30 chr12 136854394 136854821 -7427668 + L2 LINE L2 2856 3313 0 29 28 0 0 chr12 136855653 136855689 -7426800 + AT_rich Low_complexity Low_complexity 1 36 0 580 294 15 39 chr12 136856062 136856266 -7426223 - MIR SINE MIR -19 243 45 549 30 0 0 chr12 136856308 136856375 -7426114 + (GAAAA)n Simple_repeat Simple_repeat 4 70 0 1863 123 4 4 chr12 136856428 136856696 -7425793 + AluSx SINE Alu 29 296 -16 1537 235 16 42 chr12 136856825 136857208 -7425281 - MLT1A2 LTR MaLR -1 373 1 1810 252 83 23 chr12 136857271 136858044 -7424445 + L1M4 LINE L1 878 1702 -4887 1526 291 44 45 chr12 136858115 136859529 -7422960 + L1M4 LINE L1 2180 3547 -3394 4548 245 78 25 chr12 136859535 136861325 -7421164 + L1M4 LINE L1 4507 6420 -559 2446 77 0 0 chr12 136861325 136861635 -7420854 + AluY SINE Alu 1 310 -1 4548 245 78 25 chr12 136861635 136861765 -7420724 + L1M4 LINE L1 6420 6542 -437 273 316 0 0 chr12 136861766 136861902 -7420587 + (TG)n Simple_repeat Simple_repeat 2 137 0 218 317 58 0 chr12 136862702 136862806 -7419683 + L2 LINE L2 1952 2061 -1253 703 309 0 9 chr12 136863513 136863733 -7418756 - MER90 LTR ERV1 -39 575 358 1311 236 80 94 chr12 136864252 136864591 -7417898 - MLT1F LTR MaLR 0 542 213 2245 110 3 3 chr12 136864591 136864901 -7417588 + AluY SINE Alu 1 310 -1 1311 236 80 94 chr12 136864901 136865111 -7417378 - MLT1F LTR MaLR -329 213 1 30 0 0 0 chr12 136865668 136865698 -7416791 + AT_rich Low_complexity Low_complexity 1 30 0 253 272 61 80 chr12 136866265 136866478 -7416011 - MLT1J LTR MaLR -203 308 100 2319 173 26 12 chr12 136866502 136866925 -7415564 + MSTB1 LTR MaLR 4 432 0 194 206 62 144 chr12 136867379 136867441 -7415048 + MER5B DNA MER1_type 2 55 -123 2117 118 0 10 chr12 136867441 136867737 -7414752 + AluSc SINE Alu 1 293 -16 194 206 62 144 chr12 136867737 136867771 -7414718 + MER5B DNA MER1_type 55 90 -88 256 304 0 0 chr12 136867833 136867889 -7414600 + MER58B DNA MER1_type 1 56 -285 946 151 20 7 chr12 136867894 136868046 -7414443 - Tigger3(Golem) DNA MER2_type -1 3028 2875 265 214 54 0 chr12 136868045 136868101 -7414388 - Tigger3(Golem) DNA MER2_type -2970 59 1 * 562 268 92 0 chr12 136868102 136868255 -7414234 + MER58B DNA MER1_type 175 341 0 265 226 148 70 chr12 136868262 136868377 -7414112 - MIR3 SINE MIR -3 205 82 2437 211 39 20 chr12 136868423 136868461 -7414028 - L1MC3 LINE L1 -63 7722 7686 1871 123 3 11 chr12 136868461 136868798 -7413691 - AluSx SINE Alu 0 335 1 2437 211 39 20 chr12 136868798 136869302 -7413187 - L1MC3 LINE L1 -99 7686 7169 232 226 38 0 chr12 136869307 136869360 -7413129 - MLT1F1 LTR MaLR -467 100 46 333 137 151 0 chr12 136869365 136869438 -7413051 - L1MC3 LINE L1 -683 7102 7019 261 252 42 70 chr12 136869498 136869641 -7412848 - L2 LINE L2 0 3313 3175 461 302 60 0 chr12 136869679 136869828 -7412661 - MIR SINE MIR -27 235 78 367 159 0 12 chr12 136869829 136869903 -7412586 - MIR SINE MIR -92 116 49 187 77 0 0 chr12 136870299 136870325 -7412164 - L2 LINE L2 -1629 1685 1660 196 342 129 0 chr12 136870869 136871071 -7411418 - L2 LINE L2 -181 3091 2864 581 258 166 56 chr12 136871100 136871171 -7411318 - MLT1K LTR MaLR 0 476 414 2187 113 0 3 chr12 136871171 136871455 -7411034 - AluSg1 SINE Alu -26 283 1 581 258 166 56 chr12 136871455 136871810 -7410679 - MLT1K LTR MaLR -62 414 3 300 176 29 15 chr12 136873352 136873420 -7409069 - L1MA1 LINE L1 -1 6301 6233 227 94 0 0 chr12 136873423 136873455 -7409034 + L1MA4 LINE L1 6085 6116 -184 593 258 48 48 chr12 136873493 136873679 -7408810 - MLT1K LTR MaLR -310 278 93 2191 112 3 0 chr12 136873714 136874008 -7408481 - AluSg SINE Alu -15 295 1 3215 143 4 31 chr12 136874079 136874541 -7407948 - LOR1a LTR ERV1 0 497 49 2018 149 3 19 chr12 136874541 136874857 -7407632 + AluSx SINE Alu 1 311 -1 3215 143 4 31 chr12 136874857 136874905 -7407584 - LOR1a LTR ERV1 -448 49 1 1517 169 4 4 chr12 136876063 136876306 -7406183 - AluJo SINE Alu -47 265 23 800 212 11 37 chr12 136877516 136877705 -7404784 + L1ME LINE L1 5556 5739 -423 882 285 106 25 chr12 136877756 136878191 -7404298 + L1MEc LINE L1 56 525 -5871 1800 169 173 37 chr12 136878530 136878992 -7403497 - L1MC3 LINE L1 -73 7712 7188 745 177 0 8 chr12 136878993 136879123 -7403366 - L1MC3 LINE L1 -668 7117 6989 1917 261 125 55 chr12 136879123 136879220 -7403269 - L1MC3 LINE L1 -1003 6782 6693 801 208 123 0 chr12 136879220 136879374 -7403115 - FAM SINE Alu 0 175 3 1917 261 125 55 chr12 136879374 136879387 -7403102 - L1MC3 LINE L1 -1092 6693 6682 243 0 0 0 chr12 136879387 136879414 -7403075 + (TA)n Simple_repeat Simple_repeat 2 28 0 1917 261 125 55 chr12 136879414 136880242 -7402247 - L1MC3 LINE L1 -1103 6682 5753 3230 138 0 48 chr12 136880242 136880764 -7401725 + LOR1a LTR ERV1 1 497 0 1917 261 125 55 chr12 136880764 136880918 -7401571 - L1MC3 LINE L1 -2032 5753 5611 384 342 8 0 chr12 136880918 136881035 -7401454 - MIR SINE MIR -139 123 6 260 286 38 39 chr12 136881113 136881265 -7401224 - MIR SINE MIR -62 146 48 332 317 0 8 chr12 136881667 136881790 -7400699 - LTR67 LTR ERVL -10 547 426 2363 127 73 68 chr12 136882529 136882955 -7399534 + MSTA LTR MaLR 1 428 0 186 354 79 31 chr12 136883584 136883711 -7398778 - MIR SINE MIR -4 258 126 3824 205 26 20 chr12 136883711 136884221 -7398268 - L1 LINE L1 -1652 4494 3975 1971 143 0 17 chr12 136884221 136884515 -7397974 - AluSx SINE Alu -23 289 1 3824 205 26 20 chr12 136884515 136884898 -7397591 - L1 LINE L1 -2171 3975 3596 1787 266 85 7 chr12 136885397 136885941 -7396548 + L2 LINE L2 2068 2653 -661 218 297 76 25 chr12 136885939 136886057 -7396432 + L2 LINE L2 3179 3302 -11 * 1543 214 3 0 chr12 136886057 136886347 -7396142 + AluJb SINE Alu 1 291 -21 24 0 0 0 chr12 136886372 136886396 -7396093 + AT_rich Low_complexity Low_complexity 1 24 0 2328 77 10 13 chr12 136887690 136887988 -7394501 - AluY SINE Alu -14 297 1 1989 142 87 3 chr12 136890231 136890563 -7391926 + MER47A DNA MER2_type 2 361 -5 2603 127 40 33 chr12 136890692 136891075 -7391414 + MSTA LTR MaLR 1 389 -39 2422 76 0 3 chr12 136891075 136891376 -7391113 - AluY SINE Alu -11 300 1 2603 127 40 33 chr12 136891376 136891417 -7391072 + MSTA LTR MaLR 389 428 0 638 223 73 101 chr12 136891537 136891784 -7390705 + MIR SINE MIR 19 258 -4 189 356 59 15 chr12 136891890 136892025 -7390464 - MIR SINE MIR -47 215 75 213 293 0 80 chr12 136892785 136892860 -7389629 - L2 LINE L2 -4 3268 3200 396 158 0 49 chr12 136895287 136895369 -7387120 - MER67C LTR ERV1 -2 708 631 407 188 12 0 chr12 136895400 136895475 -7387014 - MER67C LTR ERV1 -59 651 576 1436 145 45 8 chr12 136895475 136895554 -7386935 - MER41B LTR ERV1 0 635 560 1727 194 0 10 chr12 136895554 136895858 -7386631 + AluJb SINE Alu 7 307 -5 1436 145 45 8 chr12 136895858 136896091 -7386398 - MER41B LTR ERV1 -75 560 267 4182 93 18 4 chr12 136896165 136896711 -7385778 - MER41A LTR ERV1 0 554 1 1714 141 11 0 chr12 136896711 136896980 -7385509 - MER41B LTR ERV1 -363 272 1 935 218 104 0 chr12 136896980 136897191 -7385298 - MER67C LTR ERV1 -130 580 348 3562 136 107 47 chr12 136897195 136897880 -7384609 + LTR8A LTR ERV1 1 726 -1 1575 120 31 50 chr12 136897880 136898006 -7384483 - AluSx SINE Alu -21 291 171 5032 150 59 65 chr12 136898006 136899083 -7383406 - MER11C LTR ERVK 0 1071 1 1575 120 31 50 chr12 136899083 136899209 -7383280 - AluSx SINE Alu -141 171 44 1147 183 43 13 chr12 136899219 136899524 -7382965 - MER67C LTR ERV1 -363 347 1 3635 121 65 4 chr12 136899657 136900177 -7382312 - MER41C LTR ERV1 0 554 3 241 253 179 0 chr12 136900210 136900305 -7382184 - L2 LINE L2 -10 3303 3192 981 179 24 32 chr12 136900357 136900402 -7382087 - MER33 DNA MER1_type -82 80 198 5316 108 3 3 chr12 136900402 136901093 -7381396 - LTR8 LTR ERV1 0 691 1 981 179 24 32 chr12 136901093 136901298 -7381191 - MER33 DNA MER1_type 37 199 1 2166 121 0 16 chr12 136901453 136901760 -7380729 + AluSc SINE Alu 1 302 -7 954 193 36 26 chr12 136901950 136902142 -7380347 - MLT1A1 LTR MaLR -2 363 170 617 191 33 26 chr12 136902350 136902502 -7379987 + LTR43 LTR ERV1 167 319 -283 743 223 102 0 chr12 136902701 136902867 -7379622 - MLT1A1 LTR MaLR -182 183 1 2681 106 3 36 chr12 136902906 136903294 -7379195 + THE1C LTR MaLR 1 375 0 486 320 26 37 chr12 136903303 136903653 -7378836 + L1ME2 LINE L1 5508 5855 -309 228 135 0 0 chr12 136904541 136904578 -7377911 + (CA)n Simple_repeat Simple_repeat 2 38 0 350 207 209 34 chr12 136904819 136904974 -7377515 - MIR SINE MIR -62 146 3 1856 182 44 44 chr12 136905287 136905438 -7377051 + MLT1A1 LTR MaLR 1 151 -214 2422 99 0 0 chr12 136905438 136905751 -7376738 + AluSp SINE Alu 1 313 0 1856 182 44 44 chr12 136905751 136905962 -7376527 + MLT1A1 LTR MaLR 150 363 -2 554 282 27 21 chr12 136906034 136906222 -7376267 + MIR SINE MIR 8 196 -66 2375 137 8 32 chr12 136906537 136906910 -7375579 + THE1B LTR MaLR 1 364 0 1596 179 17 113 chr12 136907060 136907474 -7375015 - MLT1A2 LTR MaLR 0 374 1 2303 94 3 0 chr12 136908419 136908717 -7373772 - AluSg SINE Alu -11 299 1 307 259 44 98 chr12 136908729 136909046 -7373443 - L1ME4a LINE L1 -9 6112 5813 2383 78 0 0 chr12 136909155 136909450 -7373039 + L1PA13 LINE L1 5866 6160 -3 22 0 0 0 chr12 136909634 136909656 -7372833 + AT_rich Low_complexity Low_complexity 1 22 0 6546 46 3 1 chr12 136909656 136910434 -7372055 - L1PA5 LINE L1 -9 6145 5367 4191 48 2 2 chr12 136910429 136910955 -7371534 + L1PA5 LINE L1 4842 5367 -779 * 367 272 52 46 chr12 136910955 136911128 -7371361 - MIR SINE MIR -57 205 32 229 209 0 0 chr12 136911448 136911491 -7370998 - L2 LINE L2 -3 3310 3268 1623 236 152 11 chr12 136911492 136911954 -7370535 + REP3 LTR ERV 1 527 -35 2023 89 20 14 chr12 136912097 136912390 -7370099 + L1PA13 LINE L1 5869 6163 0 2234 89 38 0 chr12 136912400 136912692 -7369797 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr12 136912848 136912869 -7369620 + AT_rich Low_complexity Low_complexity 1 21 0 1624 141 4 0 chr12 136913636 136913885 -7368604 + L1PB1 LINE L1 5900 6149 -2 436 286 9 36 chr12 136913988 136914174 -7368315 + MLT1J LTR MaLR 71 243 -166 2502 169 26 14 chr12 136914627 136915048 -7367441 + MSTB LTR MaLR 1 426 0 290 326 86 11 chr12 136916206 136916381 -7366108 + MIR SINE MIR 5 192 -70 894 273 51 51 chr12 136916477 136916909 -7365580 + MLT1J2 LTR MaLR 1 432 -18 2156 102 116 26 chr12 136917168 136917512 -7364977 + THE1C LTR MaLR 1 375 0 596 197 6 33 chr12 136917582 136917765 -7364724 + (CACCAT)n Simple_repeat Simple_repeat 3 180 0 813 191 0 22 chr12 136917787 136917923 -7364566 - FLAM_C SINE Alu 0 133 1 727 186 16 0 chr12 136917955 136918079 -7364410 - FRAM SINE Alu -12 164 39 226 225 0 0 chr12 136918079 136918119 -7364370 + (CAT)n Simple_repeat Simple_repeat 3 42 0 340 266 121 50 chr12 136918185 136918384 -7364105 - L2 LINE L2 -86 3227 3015 387 173 13 0 chr12 136918390 136918465 -7364024 - L1MD1 LINE L1 -118 6124 6049 5394 189 35 60 chr12 136918513 136918754 -7363735 - L1MC1 LINE L1 -1 6332 6086 2321 81 13 16 chr12 136918754 136919061 -7363428 + AluSc SINE Alu 1 306 -3 5394 189 35 60 chr12 136919061 136919354 -7363135 - L1MC1 LINE L1 -247 6086 5787 2413 67 0 19 chr12 136919354 136919667 -7362822 - AluY SINE Alu -4 307 1 5394 189 35 60 chr12 136919667 136920651 -7361838 - L1MC1 LINE L1 -546 5787 4884 2303 78 14 3 chr12 136920651 136920944 -7361545 - AluY SINE Alu -15 296 1 5394 189 35 60 chr12 136920944 136921534 -7360955 - L1MC1 LINE L1 -1449 4884 4281 255 277 75 21 chr12 136921534 136921628 -7360861 - MIR SINE MIR -153 109 11 202 360 0 12 chr12 136921837 136921923 -7360566 + L2 LINE L2 3184 3268 -4 22 0 0 0 chr12 136924330 136924352 -7358137 + AT_rich Low_complexity Low_complexity 1 22 0 2439 114 5 56 chr12 136924464 136924649 -7357840 + THE1C LTR MaLR 1 160 -215 2245 104 7 0 chr12 136924649 136924988 -7357501 + AluSp SINE Alu 1 341 0 2439 114 5 56 chr12 136924988 136925193 -7357296 + THE1C LTR MaLR 160 374 -1 1186 221 102 135 chr12 136925409 136925723 -7356766 + MLT1E1 LTR MaLR 1 324 -330 2301 103 0 0 chr12 136925723 136926015 -7356474 + AluY SINE Alu 1 292 -19 1186 221 102 135 chr12 136926015 136926375 -7356114 + MLT1E1 LTR MaLR 324 653 -1 1719 165 33 0 chr12 136926386 136926659 -7355830 + AluJo SINE Alu 4 285 -27 261 0 0 0 chr12 136926659 136926688 -7355801 + (CA)n Simple_repeat Simple_repeat 2 30 0 241 268 0 0 chr12 136926890 136926946 -7355543 - Charlie8 DNA MER1_type -2168 249 194 23 0 0 0 chr12 136926949 136926972 -7355517 + AT_rich Low_complexity Low_complexity 1 23 0 310 171 41 138 chr12 136927020 136927097 -7355392 - Charlie8 DNA MER1_type -180 150 88 1732 77 0 5 chr12 136927097 136927318 -7355171 - AluY SINE Alu -6 305 86 310 171 41 138 chr12 136927318 136927363 -7355126 - Charlie8 DNA MER1_type -242 88 40 321 312 77 57 chr12 136927417 136927665 -7354824 - L1ME LINE L1 -353 5768 5506 1950 156 3 3 chr12 136927665 136927960 -7354529 - AluSx SINE Alu -17 295 1 321 312 77 57 chr12 136927960 136928153 -7354336 - L1ME LINE L1 -615 5506 5318 1813 261 50 19 chr12 136928490 136929107 -7353382 + L1MCc LINE L1 14 649 -5774 956 253 28 55 chr12 136929460 136929823 -7352666 + L1ME1 LINE L1 5776 6128 -38 667 331 67 20 chr12 136930118 136930565 -7351924 - L2 LINE L2 -6 3307 2840 2398 102 0 3 chr12 136931207 136931520 -7350969 + AluSq SINE Alu 1 312 -1 2192 123 3 0 chr12 136931986 136932295 -7350194 - AluSq SINE Alu -3 310 1 554 270 64 100 chr12 136932347 136932677 -7349812 + MLT1K LTR MaLR 162 479 -109 207 308 15 0 chr12 136932683 136932748 -7349741 - L2 LINE L2 0 3272 3207 232 208 13 13 chr12 136932965 136933042 -7349447 + CT-rich Low_complexity Low_complexity 1 77 0 4527 39 0 4 chr12 136934808 136935321 -7347168 - L1PA5 LINE L1 -3 6151 5641 877 231 74 86 chr12 136936062 136936572 -7345917 - L1ME2 LINE L1 -8 6154 5664 536 158 6 175 chr12 136936631 136936802 -7345687 + MLT2B1 LTR ERVL 1 142 -378 1745 227 9 56 chr12 136936806 136937273 -7345216 + MLT2B1 LTR ERVL 76 520 0 516 258 62 26 chr12 136937649 136937843 -7344646 + MLT1K LTR MaLR 373 573 -15 2486 96 29 14 chr12 136938962 136939306 -7343183 - THE1B LTR MaLR -15 349 1 1884 169 0 0 chr12 136939857 136940147 -7342342 + AluJb SINE Alu 1 290 -22 202 200 65 26 chr12 136940170 136940325 -7342164 + (TA)n Simple_repeat Simple_repeat 2 162 0 231 161 0 18 chr12 136940904 136940960 -7341529 + L1MC4 LINE L1 6646 6700 -1342 261 109 0 0 chr12 136941194 136941240 -7341249 + (TG)n Simple_repeat Simple_repeat 1 46 0 181 340 0 0 chr12 136941608 136941661 -7340828 - MER5A DNA MER1_type -1 188 136 21 0 0 0 chr12 136941671 136941692 -7340797 + AT_rich Low_complexity Low_complexity 1 21 0 1662 168 21 18 chr12 136941692 136941978 -7340511 - AluJo SINE Alu -25 287 1 2746 124 8 0 chr12 136942001 136942373 -7340116 + THE1C LTR MaLR 1 375 0 1835 231 107 4 chr12 136942403 136942861 -7339628 + MLT1D LTR MaLR 1 505 0 771 273 138 11 chr12 136943000 136943348 -7339141 - LTR16A LTR ERVL -58 392 1 254 158 0 0 chr12 136943513 136943551 -7338938 + MLT1D LTR MaLR 4 41 -464 258 84 101 0 chr12 136943551 136943596 -7338893 - MLT2C2 LTR ERVL 0 464 422 256 250 0 0 chr12 136943603 136943655 -7338834 - MER4-int LTR ERV1 -5436 1162 1111 235 241 19 0 chr12 136943663 136943717 -7338772 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1476 246 36 71 chr12 136943728 136944224 -7338265 - MLT2B1 LTR ERVL -40 480 2 399 148 0 0 chr12 136944226 136944287 -7338202 + MLT1D LTR MaLR 35 95 -531 1199 225 41 41 chr12 136944328 136944643 -7337846 + MLT1D LTR MaLR 191 505 0 1389 93 0 31 chr12 136944811 136945004 -7337485 - AluSc SINE Alu 0 309 123 273 78 0 61 chr12 136945095 136945154 -7337335 - FLAM_A SINE Alu 0 133 84 615 298 138 0 chr12 136945228 136945453 -7337036 + MIR SINE MIR 7 262 0 436 332 26 26 chr12 136945815 136945863 -7336626 + MIR SINE MIR 2 49 -213 2945 93 0 8 chr12 136945863 136946241 -7336248 + THE1C LTR MaLR 1 375 0 436 332 26 26 chr12 136946241 136946382 -7336107 + MIR SINE MIR 48 191 -71 247 311 117 22 chr12 136946591 136946771 -7335718 + L2 LINE L2 2862 3058 -214 2373 205 24 29 chr12 136947056 136947501 -7334988 - L1MB8 LINE L1 -1 6177 5734 2168 127 7 3 chr12 136947501 136947808 -7334681 - AluSx SINE Alu -4 308 1 2373 205 24 29 chr12 136947808 136947959 -7334530 - L1MB8 LINE L1 -444 5734 5584 2224 199 24 83 chr12 136949168 136949757 -7332732 + MLT2B3 LTR ERVL 1 554 0 1453 224 30 22 chr12 136950205 136950566 -7331923 + MLT1A1 LTR MaLR 1 364 -1 2262 104 10 3 chr12 136950851 136951159 -7331330 + AluSg SINE Alu 1 310 0 368 286 181 9 chr12 136951652 136951862 -7330627 + L2 LINE L2 2648 2893 -421 182 274 0 55 chr12 136951888 136951961 -7330528 - L2 LINE L2 -247 3066 2998 391 288 102 17 chr12 136952062 136952239 -7330250 + L2 LINE L2 3120 3311 -2 201 261 22 0 chr12 136952463 136952509 -7329980 + MIR SINE MIR 29 75 -187 229 325 12 0 chr12 136952710 136952790 -7329699 + MER94 DNA DNA 1 81 -53 332 282 37 56 chr12 136954273 136954482 -7328007 - MIR SINE MIR -48 214 13 1631 135 11 15 chr12 136954928 136955188 -7327301 + AluSx SINE Alu 17 275 -37 180 0 0 0 chr12 136955190 136955210 -7327279 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 207 250 0 0 chr12 136955448 136955496 -7326993 + L2 LINE L2 3263 3310 -3 327 253 80 40 chr12 136955525 136955675 -7326814 - L2 LINE L2 -48 3265 3110 276 212 0 0 chr12 136955767 136955833 -7326656 + GA-rich Low_complexity Low_complexity 1 66 0 204 200 0 0 chr12 136956295 136956340 -7326149 + GA-rich Low_complexity Low_complexity 1 45 0 209 177 26 44 chr12 136956387 136956500 -7325989 + GA-rich Low_complexity Low_complexity 6 116 0 221 81 0 27 chr12 136956520 136956557 -7325932 + (GAGAA)n Simple_repeat Simple_repeat 2 37 0 251 263 13 13 chr12 136956560 136956636 -7325853 + GA-rich Low_complexity Low_complexity 3 78 0 655 183 0 16 chr12 136956646 136956772 -7325717 - L1MD2 LINE L1 -532 5827 5704 2149 166 31 5 chr12 136956772 136957163 -7325326 + MSTA LTR MaLR 1 401 -27 1005 70 5 53 chr12 136957163 136957187 -7325302 + (TTCC)n Simple_repeat Simple_repeat 1 200 0 1005 70 5 53 chr12 136957187 136957374 -7325115 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2174 111 0 7 chr12 136957425 136957904 -7324585 - AluSc SINE Alu 0 477 1 285 128 0 0 chr12 136957904 136957943 -7324546 + MSTA LTR MaLR 388 426 0 610 178 19 4 chr12 136957943 136958062 -7324427 - L1MD2 LINE L1 -534 5708 5591 2153 119 3 0 chr12 136958286 136958581 -7323908 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr12 136958949 136958970 -7323519 + AT_rich Low_complexity Low_complexity 1 21 0 327 224 64 40 chr12 136959584 136959709 -7322780 + MER20B DNA MER1_type 2 129 -654 307 344 47 8 chr12 136960153 136960281 -7322208 + L2 LINE L2 3139 3271 -1 1158 184 83 76 chr12 136960541 136960923 -7321566 + MER41B LTR ERV1 165 600 -35 357 211 67 29 chr12 136960956 136961060 -7321429 - MER117 DNA MER1_type -60 137 30 189 0 0 0 chr12 136962263 136962284 -7320205 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 563 31 0 0 chr12 136962284 136962348 -7320141 - L1PA4 LINE L1 -10 6145 6082 2373 121 128 15 chr12 136962385 136962775 -7319714 + Tigger2a DNA MER2_type 1 434 0 532 230 44 99 chr12 136963373 136963525 -7318964 - MIR SINE MIR 0 262 117 2135 125 67 31 chr12 136963525 136963885 -7318604 + THE1C LTR MaLR 3 375 0 532 230 44 99 chr12 136963885 136963974 -7318515 - MIR SINE MIR -145 117 25 2554 117 34 0 chr12 136964478 136964830 -7317659 + THE1B LTR MaLR 1 364 0 2479 187 63 37 chr12 136965417 136965909 -7316580 + MLT1D LTR MaLR 1 505 0 1958 177 0 9 chr12 136966458 136966797 -7315692 - L1MA3 LINE L1 -3 6302 5967 2146 186 23 51 chr12 136967562 136967836 -7314653 + MER65C LTR ERV1 1 258 -203 2451 120 122 8 chr12 136967836 136968220 -7314269 + MSTA LTR MaLR 1 428 0 2146 186 23 51 chr12 136968220 136968419 -7314070 + MER65C LTR ERV1 258 461 0 642 118 0 0 chr12 136968874 136968976 -7313513 + (TA)n Simple_repeat Simple_repeat 1 102 0 1689 136 77 7 chr12 136968976 136969130 -7313359 - AluSx SINE Alu -27 285 143 401 0 0 20 chr12 136969130 136969180 -7313309 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1689 136 77 7 chr12 136969180 136969291 -7313198 - AluSx SINE Alu -169 143 1 500 297 51 17 chr12 136969741 136970034 -7312455 + L1ME LINE L1 5522 5824 -297 282 56 0 0 chr12 136970131 136970167 -7312322 + (TA)n Simple_repeat Simple_repeat 2 37 0 1684 77 0 5 chr12 136970169 136970378 -7312111 - L1PB1 LINE L1 -19 6132 5925 201 82 61 20 chr12 136970494 136970543 -7311946 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 3174 231 43 42 chr12 136970587 136971437 -7311052 - L1MD2 LINE L1 -21 6338 5488 364 321 0 22 chr12 136973285 136973419 -7309070 + MIR SINE MIR 96 226 -36 2321 97 3 0 chr12 136973526 136973826 -7308663 - AluY SINE Alu -10 301 1 4200 113 12 7 chr12 136974004 136974607 -7307882 + L1MA2 LINE L1 5699 6304 0 363 328 25 0 chr12 136975179 136975298 -7307191 + L2 LINE L2 3192 3313 0 189 300 43 0 chr12 136975311 136975381 -7307108 + L2 LINE L2 2275 2347 -967 2309 152 116 56 chr12 136975937 136976418 -7306071 + MLT2B2 LTR ERVL 6 515 0 586 304 73 39 chr12 136976766 136977005 -7305484 + MIR SINE MIR 3 232 -30 1978 261 73 55 chr12 136977407 136977894 -7304595 + L1MEc LINE L1 39 546 -5850 1763 146 4 11 chr12 136977894 136978169 -7304320 - AluJo SINE Alu -26 286 14 1978 261 73 55 chr12 136978169 136978432 -7304057 + L1MEc LINE L1 546 803 -5593 258 32 0 0 chr12 136978464 136978495 -7303994 + (CAAT)n Simple_repeat Simple_repeat 1 31 0 1878 163 34 69 chr12 136980825 136981262 -7301227 - L1MC3 LINE L1 -19 7766 7345 2065 222 45 59 chr12 136981265 136981424 -7301065 - L1MD2 LINE L1 -10 6349 6189 1546 192 3 23 chr12 136981424 136981726 -7300763 - AluJo SINE Alu -16 296 1 2065 222 45 59 chr12 136981726 136982229 -7300260 - L1MD2 LINE L1 -170 6189 5696 2172 122 3 6 chr12 136982880 136983191 -7299298 + AluSx SINE Alu 3 312 0 197 342 70 38 chr12 136983598 136983756 -7298733 - L2 LINE L2 -16 3256 3094 182 288 0 41 chr12 136984111 136984184 -7298305 - MIR SINE MIR -82 180 111 511 285 49 0 chr12 136984243 136984387 -7298102 + MIR SINE MIR 11 161 -101 1563 209 10 0 chr12 136984542 136984725 -7297764 - AluJb SINE Alu -5 307 118 207 0 0 0 chr12 136984725 136984748 -7297741 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1563 209 10 0 chr12 136984748 136984866 -7297623 - AluJb SINE Alu -194 118 3 372 22 0 0 chr12 136984916 136984961 -7297528 + (CA)n Simple_repeat Simple_repeat 2 46 0 2427 143 8 27 chr12 136986748 136987119 -7295370 - THE1B LTR MaLR 0 364 1 509 312 63 43 chr12 136987148 136987594 -7294895 - L2 LINE L2 0 3313 2859 226 208 99 30 chr12 136988378 136988479 -7294010 + L1MC5 LINE L1 7635 7742 -219 714 211 8 8 chr12 136988490 136988623 -7293866 - FLAM_C SINE Alu 0 133 1 2234 103 0 0 chr12 136988666 136988956 -7293533 - AluSg1 SINE Alu -19 290 1 22 0 0 0 chr12 136989762 136989784 -7292705 + AT_rich Low_complexity Low_complexity 1 22 0 1741 161 0 37 chr12 136989928 136990252 -7292237 - AluJo SINE Alu 0 312 1 198 0 0 0 chr12 136990411 136990433 -7292056 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 5192 94 8 0 chr12 136990436 136991094 -7291395 - L1PA10 LINE L1 -11 6157 5495 538 279 123 63 chr12 136991686 136992116 -7290373 - MLT1J LTR MaLR -12 499 44 1581 222 89 9 chr12 136992493 136992921 -7289568 + MLT1C LTR MaLR 6 467 0 248 303 79 0 chr12 136992927 136993016 -7289473 + MIR SINE MIR 146 241 -21 1352 121 117 0 chr12 136993068 136993274 -7289215 - MER30 DNA MER1_type 0 230 1 2702 113 8 19 chr12 136993319 136993698 -7288791 - THE1C LTR MaLR 0 375 1 809 159 97 0 chr12 136993887 136994032 -7288457 + FRAM SINE Alu 1 156 -20 409 254 71 24 chr12 136994206 136994332 -7288157 + L2 LINE L2 3182 3313 0 2298 138 33 30 chr12 136994880 136995243 -7287246 + THE1B LTR MaLR 1 364 0 679 274 87 74 chr12 136995316 136995398 -7287091 - LTR16C LTR ERVL 0 491 412 2269 124 40 30 chr12 136995398 136995769 -7286720 - THE1C LTR MaLR 0 375 1 679 274 87 74 chr12 136995769 136995829 -7286660 - LTR16C LTR ERVL -79 412 354 1653 121 8 28 chr12 136995829 136996078 -7286411 + AluSx SINE Alu 52 295 -17 679 274 87 74 chr12 136996078 136996380 -7286109 - LTR16C LTR ERVL -137 354 40 213 317 81 32 chr12 136996746 136996869 -7285620 + L2 LINE L2 2932 3060 -212 235 302 86 0 chr12 136996910 136997026 -7285463 + L2 LINE L2 2636 2761 -553 200 270 0 10 chr12 136997052 136997152 -7285337 + (CA)n Simple_repeat Simple_repeat 2 100 0 211 362 101 40 chr12 136997263 136997412 -7285077 + L2 LINE L2 3102 3259 -13 6710 66 0 5 chr12 136997627 136998450 -7284039 + L1PA8 LINE L1 5350 6168 -4 910 274 66 47 chr12 136998755 136999418 -7283071 - L1MC5 LINE L1 -51 7910 7235 313 333 89 40 chr12 136999648 136999873 -7282616 + MIR SINE MIR 10 245 -17 1107 53 0 0 chr12 137000205 137000337 -7282152 + AluY SINE Alu 1 132 -179 3438 104 14 6 chr12 137000342 137000832 -7281657 + MER75 DNA T2_type 21 514 0 217 209 0 0 chr12 137000895 137000938 -7281551 + CT-rich Low_complexity Low_complexity 2 44 0 793 163 18 9 chr12 137002242 137002454 -7280035 + CT-rich Low_complexity Low_complexity 1 213 0 644 194 35 7 chr12 137002636 137002780 -7279709 + L1MDa LINE L1 79 226 -6314 715 262 105 29 chr12 137002781 137003094 -7279395 + MLT1J2 LTR MaLR 114 450 0 321 344 74 0 chr12 137003544 137003733 -7278756 + L1M4 LINE L1 5185 5387 -759 1042 30 43 6 chr12 137005064 137005228 -7277261 + (TTCC)n Simple_repeat Simple_repeat 3 172 0 2092 122 3 0 chr12 137005250 137005545 -7276944 - AluSx SINE Alu -10 302 7 269 231 97 138 chr12 137005760 137005845 -7276644 - MER112 DNA MER1_type -6 254 167 1778 177 0 13 chr12 137005845 137006144 -7276345 + AluJo SINE Alu 5 299 -13 269 231 97 138 chr12 137006144 137006305 -7276184 - MER112 DNA MER1_type -93 167 18 2114 110 38 0 chr12 137006305 137006595 -7275894 + AluSg SINE Alu 7 307 -3 7797 27 27 30 chr12 137007108 137008008 -7274481 + MER11D LTR ERVK 1 897 0 2306 89 6 29 chr12 137008021 137008337 -7274152 - AluSq SINE Alu -4 309 1 315 344 94 81 chr12 137008359 137008752 -7273737 - L2 LINE L2 0 3272 2875 437 228 31 39 chr12 137008863 137008990 -7273499 - MIR SINE MIR -45 217 92 2495 183 75 2 chr12 137009020 137009513 -7272976 + L1MB7 LINE L1 5655 6183 -1 222 316 74 0 chr12 137009516 137009611 -7272878 - MIR SINE MIR -157 105 4 334 338 35 7 chr12 137010036 137010178 -7272311 + MIR SINE MIR 22 167 -95 688 115 0 0 chr12 137010307 137010403 -7272086 - AluY SINE Alu -1 310 215 333 228 91 102 chr12 137010523 137010738 -7271751 + MIR SINE MIR 53 262 0 186 365 24 0 chr12 137010742 137010827 -7271662 + MIR SINE MIR 172 258 -4 1813 133 109 70 chr12 137011912 137012210 -7270279 - MSTB1 LTR MaLR -2 430 110 2434 124 30 25 chr12 137012210 137012572 -7269917 - THE1B LTR MaLR 0 364 1 1813 133 109 70 chr12 137012572 137012687 -7269802 - MSTB1 LTR MaLR -322 110 1 317 301 41 8 chr12 137012691 137012814 -7269675 - Charlie8 DNA MER1_type -2206 211 85 943 201 39 51 chr12 137014066 137014275 -7268214 - MER61E LTR ERV1 0 569 362 2295 102 0 0 chr12 137014275 137014578 -7267911 - AluSx SINE Alu -9 303 1 943 201 39 51 chr12 137014578 137014602 -7267887 - MER61E LTR ERV1 -207 362 339 321 246 0 97 chr12 137014680 137014794 -7267695 - MER61E LTR ERV1 -381 188 86 * 389 248 50 0 chr12 137014775 137014876 -7267613 - LTR25 LTR ERV1 -441 353 248 265 277 100 26 chr12 137015208 137015316 -7267173 + MER113 DNA MER1_type? 6 105 -416 2214 102 7 3 chr12 137015316 137015621 -7266868 + AluSc SINE Alu 1 306 -3 265 277 100 26 chr12 137015621 137015743 -7266746 + MER113 DNA MER1_type? 105 253 -268 353 272 24 53 chr12 137017517 137017612 -7264877 - L1MDa LINE L1 -6360 180 91 2404 49 23 3 chr12 137017612 137017917 -7264572 - AluY SINE Alu 0 311 1 353 272 24 53 chr12 137017917 137017990 -7264499 - L1MDa LINE L1 -6449 91 17 2455 142 21 13 chr12 137018416 137018803 -7263686 + MLT1B LTR MaLR 1 390 0 21 82 0 0 chr12 137019799 137019848 -7262641 + AT_rich Low_complexity Low_complexity 1 49 0 249 243 22 81 chr12 137019858 137019922 -7262567 - MER113 DNA MER1_type? -393 128 75 3930 148 24 35 chr12 137019922 137020637 -7261852 + MER67C LTR ERV1 4 710 0 249 243 22 81 chr12 137020637 137020708 -7261781 - MER113 DNA MER1_type? -446 75 1 2359 88 3 0 chr12 137020942 137021239 -7261250 - AluSx SINE Alu -14 298 1 766 287 73 55 chr12 137023051 137024195 -7258294 + L1ME LINE L1 540 1729 -4581 586 331 50 35 chr12 137024204 137024687 -7257802 + L1ME LINE L1 1772 2261 -4049 21 71 0 0 chr12 137024850 137024892 -7257597 + AT_rich Low_complexity Low_complexity 1 42 0 254 276 144 21 chr12 137025026 137025269 -7257220 + L1ME LINE L1 5594 5866 -238 482 301 48 6 chr12 137025305 137025471 -7257018 - MIR SINE MIR -22 240 68 702 153 15 104 chr12 137025553 137025755 -7256734 - MER92B LTR ERV1 0 636 453 1633 227 56 62 chr12 137025755 137025790 -7256699 - MER92B LTR ERV1 -125 511 477 3453 146 37 0 chr12 137025790 137026298 -7256191 - MER1A DNA MER1_type 0 527 1 1633 227 56 62 chr12 137026298 137026747 -7255742 - MER92B LTR ERV1 -159 477 30 564 30 40 20 chr12 137026897 137026998 -7255491 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 369 75 0 0 chr12 137026998 137027051 -7255438 + (TC)n Simple_repeat Simple_repeat 2 54 0 594 269 6 6 chr12 137028030 137028197 -7254292 + MIR SINE MIR 96 262 0 587 247 29 41 chr12 137028848 137029018 -7253471 + MIR SINE MIR 1 168 -94 1242 309 48 2 chr12 137029058 137029556 -7252933 - LTR33 LTR ERVL 0 521 1 1090 145 14 7 chr12 137029932 137030210 -7252279 + L1MA5A LINE L1 5855 6292 -5 478 204 0 0 chr12 137030281 137030379 -7252110 - L1MB5 LINE L1 0 6174 6077 2395 89 0 0 chr12 137030613 137030917 -7251572 - AluSg SINE Alu -6 304 1 323 254 26 9 chr12 137032349 137032463 -7250026 - L1M4 LINE L1 -3592 2554 2439 415 266 71 0 chr12 137033621 137033734 -7248755 + MIR SINE MIR 110 230 -32 240 340 43 11 chr12 137033740 137033834 -7248655 + L2 LINE L2 2882 2978 -335 530 270 62 6 chr12 137033869 137034047 -7248442 + L2 LINE L2 3126 3313 0 1648 173 7 14 chr12 137034221 137034510 -7247979 - AluJo SINE Alu -25 287 1 1101 167 14 36 chr12 137034582 137034784 -7247705 - L1MC1 LINE L1 0 6333 6135 216 0 0 0 chr12 137034784 137034808 -7247681 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1101 167 14 36 chr12 137034808 137034827 -7247662 - L1MC1 LINE L1 -198 6135 6117 2511 176 29 0 chr12 137035764 137036178 -7246311 + MSTB LTR MaLR 1 426 0 8877 188 30 4 chr12 137036178 137037783 -7244706 + MSTB-int LTR MaLR 1 1646 -5 2170 181 74 15 chr12 137037784 137038187 -7244302 + MSTA LTR MaLR 1 427 -1 1093 225 8 96 chr12 137038446 137038599 -7243890 + LTR53 LTR ERVL 196 302 -217 2586 152 8 50 chr12 137038599 137039081 -7243408 - L1PA15 LINE L1 0 6165 5704 1093 225 8 96 chr12 137039081 137039282 -7243207 + LTR53 LTR ERVL 302 519 0 504 286 141 14 chr12 137039409 137039685 -7242804 + LTR16A1 LTR ERVL 145 455 -2 1310 222 79 111 chr12 137039720 137040541 -7241948 - LTR1B LTR ERV1 -1 825 28 329 269 123 15 chr12 137040617 137040747 -7241742 + MIR SINE MIR 109 252 -10 1584 201 0 13 chr12 137040913 137041211 -7241278 - AluJo SINE Alu -18 294 1 226 167 83 0 chr12 137041211 137041259 -7241230 + L1MC4 LINE L1 6652 6703 -1339 344 111 16 0 chr12 137041300 137041363 -7241126 + (TA)n Simple_repeat Simple_repeat 1 64 0 1746 152 0 38 chr12 137041367 137041656 -7240833 - AluJo SINE Alu -23 289 12 2273 116 6 6 chr12 137042745 137043056 -7239433 + AluSx SINE Alu 1 311 -1 191 245 0 38 chr12 137044209 137044262 -7238227 + L2 LINE L2 3250 3300 -13 187 289 0 0 chr12 137044361 137044399 -7238090 + MIR SINE MIR 220 257 -5 2297 123 0 0 chr12 137044560 137044869 -7237620 + AluSx SINE Alu 1 309 -3 1060 115 0 16 chr12 137044872 137045055 -7237434 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2139 134 0 0 chr12 137045222 137045520 -7236969 - AluSx SINE Alu -14 298 1 223 340 48 34 chr12 137046181 137046328 -7236161 + L2 LINE L2 3116 3264 -8 314 229 23 147 chr12 137046695 137046913 -7235576 - MLT1J LTR MaLR -202 309 119 14938 136 24 6 chr12 137047181 137049525 -7232964 - Tigger1 DNA MER2_type 0 2418 32 848 194 35 40 chr12 137049579 137049779 -7232710 - MLT1D LTR MaLR 0 505 307 2518 187 21 20 chr12 137049779 137050296 -7232193 + LTR27 LTR ERV1 2 497 -4 965 169 47 122 chr12 137050300 137050464 -7232025 - MLT1D LTR MaLR -196 309 179 2014 131 7 7 chr12 137050464 137050761 -7231728 - AluSx SINE Alu -15 297 1 965 169 47 122 chr12 137050761 137050916 -7231573 - MLT1D LTR MaLR -326 179 14 793 218 11 17 chr12 137051581 137051760 -7230729 + LTR28 LTR ERV1 1 178 -842 946 217 73 61 chr12 137051810 137052137 -7230352 + LTR27 LTR ERV1 306 636 0 213 340 96 53 chr12 137052188 137052470 -7230019 - L2 LINE L2 -337 2977 2684 629 314 14 14 chr12 137052644 137052854 -7229635 - MIR SINE MIR -36 226 17 1470 136 27 5 chr12 137052980 137053281 -7229208 - THE1B LTR MaLR 0 364 1 407 248 64 14 chr12 137053403 137053544 -7228945 - Charlie8 DNA MER1_type -2224 193 46 1065 227 18 5 chr12 137054704 137054924 -7227565 - MER58A DNA MER1_type -1 223 1 2157 110 0 42 chr12 137055188 137055497 -7226992 - AluSq SINE Alu -12 301 6 512 78 0 26 chr12 137055646 137055723 -7226766 - L1PA8 LINE L1 0 6172 6098 6534 57 11 2 chr12 137055818 137056638 -7225851 - L1PA7 LINE L1 0 6154 5328 293 315 137 0 chr12 137056662 137056796 -7225693 + MIR3 SINE MIR 4 160 -48 574 273 131 46 chr12 137056796 137057162 -7225327 - MER113 DNA MER1_type? 0 521 125 762 156 0 0 chr12 137057163 137057272 -7225217 + FLAM_C SINE Alu 14 122 -21 1513 170 81 25 chr12 137057301 137057413 -7225076 + AluJo SINE Alu 2 106 -196 1957 118 26 33 chr12 137057413 137057719 -7224770 + AluSq SINE Alu 1 304 -9 1513 170 81 25 chr12 137057719 137057922 -7224567 + AluJo SINE Alu 106 302 0 278 26 26 0 chr12 137059070 137059109 -7223380 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 2061 135 3 0 chr12 137059112 137059401 -7223088 - AluSq SINE Alu -23 290 1 234 269 46 91 chr12 137059464 137059639 -7222850 - MER102a DNA MER1_type -8 322 156 264 312 130 19 chr12 137060122 137060276 -7222213 - MLT1L LTR MaLR -27 588 418 861 277 42 4 chr12 137061276 137061514 -7220975 + L1MEc LINE L1 39 285 -6111 1982 238 93 28 chr12 137061632 137061887 -7220602 + L1M4 LINE L1 3610 3847 -2299 2623 104 94 8 chr12 137061887 137062281 -7220208 - MSTA LTR MaLR 0 428 1 1982 238 93 28 chr12 137062281 137062710 -7219779 + L1M4 LINE L1 3847 4339 -1807 3687 82 18 0 chr12 137063274 137063724 -7218765 + LTR22A LTR ERVK 1 458 0 8548 128 18 3 chr12 137063724 137064966 -7217523 + HERVK22 LTR ERVK 1 1260 -5577 * 11992 109 6 2 chr12 137064953 137066712 -7215777 + HERVK22 LTR ERVK 3188 6822 -15 3712 77 11 4 chr12 137066750 137067205 -7215284 + LTR22A LTR ERVK 1 458 0 2271 110 3 0 chr12 137067848 137068149 -7214340 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr12 137068395 137068418 -7214071 + (TAA)n Simple_repeat Simple_repeat 1 23 0 356 187 16 2 chr12 137068844 137068914 -7213575 - MER68 LTR ERV1 -11 551 489 1392 227 81 20 chr12 137069033 137069377 -7213112 - MER68 LTR ERV1 -73 489 125 1726 116 55 4 chr12 137070046 137070361 -7212128 + AluSg SINE Alu 1 310 0 362 193 110 91 chr12 137070530 137070789 -7211700 - LTR48 LTR ERV1 -21 737 403 2774 113 3 3 chr12 137070789 137071153 -7211336 - THE1B LTR MaLR 0 364 1 362 193 110 91 chr12 137071153 137071179 -7211310 - LTR48 LTR ERV1 -355 403 379 * 493 242 25 34 chr12 137071157 137071434 -7211055 - LTR48B LTR ERV1 -374 270 2 2199 172 72 25 chr12 137072567 137072818 -7209671 - MLT1C LTR MaLR -1 466 228 279 0 0 0 chr12 137072818 137072849 -7209640 + (TG)n Simple_repeat Simple_repeat 2 32 0 2199 172 72 25 chr12 137072849 137072870 -7209619 - MLT1C LTR MaLR -239 228 209 1743 137 10 65 chr12 137072870 137073177 -7209312 - AluJb SINE Alu -22 290 1 2199 172 72 25 chr12 137073177 137073346 -7209143 - MLT1C LTR MaLR -258 209 3 281 224 161 70 chr12 137073560 137073703 -7208786 - MLT1K LTR MaLR -286 302 147 3075 31 2 0 chr12 137073912 137074315 -7208174 - L1P LINE L1 -732 5423 5020 5211 21 2 0 chr12 137074315 137074902 -7207587 + L1PA3 LINE L1 5582 6155 0 577 243 35 23 chr12 137076006 137076179 -7206310 + L1ME3 LINE L1 5910 6084 -78 362 260 48 14 chr12 137076260 137076406 -7206083 - MLT1H LTR MaLR -341 208 58 387 309 19 56 chr12 137076553 137076781 -7205708 - MIR SINE MIR -26 236 16 552 308 97 51 chr12 137076843 137077365 -7205124 - L2 LINE L2 -9 3304 2783 224 321 38 38 chr12 137077551 137077682 -7204807 + MIR SINE MIR 34 164 -98 287 186 0 17 chr12 137077945 137078004 -7204485 - MLT1D LTR MaLR 0 505 448 6486 165 8 4 chr12 137078100 137080224 -7202265 + L1PB1 LINE L1 4017 6151 0 1671 170 19 35 chr12 137080319 137080352 -7202137 - AluJo SINE Alu 0 312 280 257 0 30 0 chr12 137080352 137080385 -7202104 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1671 170 19 35 chr12 137080385 137080668 -7201821 - AluJo SINE Alu -32 280 1 259 348 26 0 chr12 137081574 137081689 -7200800 + MIR SINE MIR 117 234 -28 216 268 175 0 chr12 137081706 137081803 -7200686 + MIR SINE MIR 130 243 -19 566 243 58 46 chr12 137082322 137082348 -7200141 + MER96 DNA MER1_type? 1 25 -150 2442 99 5 56 chr12 137082348 137082722 -7199767 - THE1A LTR MaLR 0 355 1 566 243 58 46 chr12 137082722 137082868 -7199621 + MER96 DNA MER1_type? 25 175 0 439 340 86 14 chr12 137083246 137083455 -7199034 - MIR SINE MIR -36 226 3 527 309 86 68 chr12 137083727 137084269 -7198220 + L2 LINE L2 2766 3312 -1 513 230 91 60 chr12 137084359 137084619 -7197870 - MLT1L LTR MaLR -1 611 235 1044 294 113 22 chr12 137084866 137085362 -7197127 + L1MB7 LINE L1 5368 5911 -273 1540 181 101 0 chr12 137085406 137085694 -7196795 - MER7A DNA MER2_type -31 315 1 16411 87 16 8 chr12 137085806 137087970 -7194519 + HERVL LTR ERVL 3455 5635 -19 297 279 54 23 chr12 137088131 137088260 -7194229 + L2 LINE L2 2700 2832 -482 301 278 86 7 chr12 137088384 137088535 -7193954 - MIR SINE MIR -37 225 63 283 330 60 28 chr12 137088894 137089109 -7193380 + MIR SINE MIR 36 257 -5 22 0 0 0 chr12 137090279 137090301 -7192188 + AT_rich Low_complexity Low_complexity 1 22 0 1861 176 0 0 chr12 137090426 137090727 -7191762 - AluJb SINE Alu -11 301 1 1937 303 89 21 chr12 137090824 137092133 -7190356 + L1ME3A LINE L1 3884 5281 -865 2066 125 26 16 chr12 137092196 137092499 -7189990 - AluSx SINE Alu -6 306 1 874 268 53 55 chr12 137092549 137093202 -7189287 + L1ME3A LINE L1 5360 6046 -124 2343 84 0 3 chr12 137093202 137093501 -7188988 - AluY SINE Alu -13 298 1 874 268 53 55 chr12 137093501 137093613 -7188876 + L1ME3A LINE L1 6046 6157 -13 656 237 32 40 chr12 137095217 137095466 -7187023 + HAL1 LINE L1 1653 1899 -608 22 35 0 0 chr12 137095710 137095739 -7186750 + AT_rich Low_complexity Low_complexity 1 29 0 783 161 81 0 chr12 137096320 137096469 -7186020 - L1MC1 LINE L1 0 6333 6173 2306 153 36 0 chr12 137096592 137096977 -7185512 - L1MC1 LINE L1 -165 6168 5770 3058 32 0 0 chr12 137097938 137098277 -7184212 - L1PA4 LINE L1 -6 6149 5811 671 260 106 82 chr12 137098549 137098880 -7183609 - MER102b DNA MER1_type -2 339 1 240 315 28 49 chr12 137101899 137102042 -7180447 + MIR3 SINE MIR 51 190 -18 373 94 0 0 chr12 137102578 137102631 -7179858 - L1MA2 LINE L1 -1 6303 6251 2226 223 37 35 chr12 137102644 137103190 -7179299 - LTR55 LTR ERV -1 547 1 187 374 17 17 chr12 137103490 137103605 -7178884 - L2 LINE L2 -268 3045 2931 570 267 148 74 chr12 137104062 137104631 -7177858 - L2 LINE L2 -340 2974 2364 2295 105 7 3 chr12 137104804 137105108 -7177381 - AluSg1 SINE Alu -4 305 1 494 236 35 21 chr12 137105192 137105336 -7177153 + MIR SINE MIR 33 178 -84 485 224 0 0 chr12 137105953 137106051 -7176438 + MER58A DNA MER1_type 12 109 0 * 1366 234 47 30 chr12 137106051 137106477 -7176012 - MLT1C LTR MaLR -9 496 1 243 226 81 0 chr12 137106564 137106626 -7175863 + L2 LINE L2 3197 3263 -50 186 261 22 0 chr12 137106685 137106731 -7175758 - L2 LINE L2 -32 3240 3194 21 36 0 0 chr12 137106790 137106818 -7175671 + AT_rich Low_complexity Low_complexity 1 28 0 275 354 28 22 chr12 137107151 137107329 -7175160 + L2 LINE L2 2578 2756 -558 539 279 29 35 chr12 137107456 137107628 -7174861 - MER69A DNA AcHobo -3 174 4 247 367 23 16 chr12 137107645 137107773 -7174716 + L2 LINE L2 2915 3043 -229 1726 153 57 36 chr12 137107797 137108154 -7174335 + THE1C LTR MaLR 3 378 -50 2550 57 0 0 chr12 137108154 137108450 -7174039 - L1PA7 LINE L1 -11 6143 5848 1726 153 57 36 chr12 137108450 137108503 -7173986 + THE1C LTR MaLR 378 428 0 317 229 122 61 chr12 137108746 137108877 -7173612 + L2 LINE L2 3133 3271 -1 182 268 206 0 chr12 137109941 137110038 -7172451 + MIR SINE MIR 73 189 -73 217 219 0 0 chr12 137110949 137110990 -7171499 + (CACCAT)n Simple_repeat Simple_repeat 5 45 0 290 323 138 0 chr12 137110998 137111183 -7171306 - MIR SINE MIR -14 248 31 450 53 0 0 chr12 137111308 137111365 -7171124 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 684 294 63 35 chr12 137111424 137111849 -7170640 + LTR33 LTR ERVL 3 439 -82 688 298 99 31 chr12 137112021 137112374 -7170115 + MLT1K LTR MaLR 207 583 -5 209 32 0 32 chr12 137112409 137112440 -7170049 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2270 117 0 3 chr12 137113114 137113423 -7169066 - AluSc SINE Alu 0 309 2 227 306 0 0 chr12 137113454 137113539 -7168950 - MER113 DNA MER1_type? -322 199 115 788 278 22 61 chr12 137113607 137113988 -7168501 - MLT2C1 LTR ERVL -30 434 1 222 258 0 134 chr12 137114070 137114167 -7168322 - MIR SINE MIR -94 114 31 11477 85 24 1 chr12 137114338 137116571 -7165918 + L1PA7 LINE L1 3895 6152 -2 678 157 10 0 chr12 137116980 137117082 -7165407 + LTR18B LTR ERVL 1 103 -511 760 146 88 58 chr12 137117103 137117308 -7165181 + LTR18B LTR ERVL 385 595 -19 546 177 21 0 chr12 137118855 137118951 -7163538 - MER53 DNA DNA -91 98 1 22 0 0 0 chr12 137119180 137119202 -7163287 + AT_rich Low_complexity Low_complexity 1 22 0 338 262 9 6 chr12 137119249 137119580 -7162909 + (TG)n Simple_repeat Simple_repeat 1 332 0 604 289 27 39 chr12 137119580 137119840 -7162649 + MIR SINE MIR 4 260 -2 206 254 34 0 chr12 137119891 137119950 -7162539 + MIR SINE MIR 89 149 -113 1777 168 109 11 chr12 137119951 137120326 -7162163 - MSTA LTR MaLR -1 427 16 221 320 0 39 chr12 137120358 137120430 -7162059 + MIR SINE MIR 147 215 -47 468 322 22 44 chr12 137120430 137120657 -7161832 + MIR SINE MIR 1 222 -40 304 325 89 46 chr12 137121066 137121303 -7161186 + MIR SINE MIR 2 248 -14 4410 274 47 32 chr12 137121439 137123183 -7159306 + L1MEc LINE L1 39 1808 -4588 217 343 86 39 chr12 137123588 137123821 -7158668 - MIR SINE MIR -18 244 1 1096 187 25 0 chr12 137124986 137125221 -7157268 - L1P LINE L1 -749 5397 5157 5770 80 0 3 chr12 137125221 137125948 -7156541 + L1PA13 LINE L1 5438 6163 0 289 262 90 48 chr12 137126775 137126920 -7155569 - MIR SINE MIR -1 261 111 544 186 8 42 chr12 137127056 137127174 -7155315 - MLT1J2 LTR MaLR -314 136 23 306 315 56 0 chr12 137127174 137127263 -7155226 - MIR SINE MIR -161 101 8 2456 79 0 7 chr12 137127902 137128242 -7154247 + AluY SINE Alu 1 311 0 475 169 77 54 chr12 137128511 137128641 -7153848 + LTR45B LTR ERV1 356 488 -1 570 232 110 63 chr12 137128710 137129030 -7153459 - MLT1J2 LTR MaLR -39 370 21 386 224 93 19 chr12 137129386 137129493 -7152996 + MER58 DNA MER1_type 2306 2420 0 2393 51 0 57 chr12 137129628 137129942 -7152547 - AluY SINE Alu -15 296 1 186 43 0 0 chr12 137130588 137130611 -7151878 + (TA)n Simple_repeat Simple_repeat 1 23 0 26 82 0 0 chr12 137131500 137131561 -7150928 + AT_rich Low_complexity Low_complexity 1 61 0 213 119 0 0 chr12 137132912 137132954 -7149535 + (CA)n Simple_repeat Simple_repeat 1 42 0 337 263 81 53 chr12 137133102 137133343 -7149146 - L1MC4 LINE L1 -860 6948 6643 200 200 0 0 chr12 137133539 137133579 -7148910 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 259 300 20 100 chr12 137133597 137133747 -7148742 + L2 LINE L2 2155 2292 -1022 594 75 0 0 chr12 137133901 137133981 -7148508 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 258 281 0 0 chr12 137134113 137134177 -7148312 + MIR SINE MIR 91 154 -108 1460 116 5 19 chr12 137136119 137136335 -7146154 - AluSg/x SINE Alu -13 296 84 237 260 0 0 chr12 137136509 137136559 -7145930 - MIR SINE MIR 0 262 213 180 0 0 0 chr12 137137064 137137084 -7145405 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 571 283 18 6 chr12 137138234 137138400 -7144089 - MER110 LTR ERV1 0 491 324 2157 127 7 0 chr12 137138608 137138915 -7143574 + AluSx SINE Alu 1 309 -3 430 284 88 32 chr12 137140076 137140361 -7142128 + MLT1L LTR MaLR 315 615 0 3492 104 22 22 chr12 137140697 137141188 -7141301 - LTR22B LTR ERVK -1 491 1 525 260 39 7 chr12 137141759 137141913 -7140576 - MLT1B LTR MaLR -217 173 15 1412 297 118 12 chr12 137141939 137142357 -7140132 - MER69 DNA AcHobo -589 637 140 461 116 0 93 chr12 137142357 137142379 -7140110 - MADE1 DNA Mariner 0 80 58 2115 79 49 0 chr12 137142379 137142683 -7139806 + AluY SINE Alu 1 317 0 461 116 0 93 chr12 137142683 137142745 -7139744 - MADE1 DNA Mariner -22 58 3 1412 297 118 12 chr12 137142745 137142901 -7139588 - MER69 DNA AcHobo -1086 140 2 718 309 93 0 chr12 137143198 137143434 -7139055 + MIR SINE MIR 5 262 0 239 260 10 0 chr12 137143831 137143927 -7138562 + CT-rich Low_complexity Low_complexity 1 97 0 635 277 156 42 chr12 137144775 137145154 -7137335 - MLT1J1 LTR MaLR -8 438 17 538 293 21 37 chr12 137145710 137145898 -7136591 - MIR SINE MIR -25 237 53 422 250 182 21 chr12 137145934 137146126 -7136363 + L2 LINE L2 3091 3313 0 2462 229 71 15 chr12 137146346 137146936 -7135553 - MER82 DNA MER2_type -7 646 24 1456 139 52 24 chr12 137146938 137147225 -7135264 + L1MA8 LINE L1 5993 6287 -4 425 239 11 0 chr12 137148322 137148410 -7134079 + MER81 DNA DNA 25 113 -1 217 246 15 46 chr12 137148647 137148712 -7133777 - L2 LINE L2 -1 3271 3209 181 208 28 0 chr12 137148746 137148818 -7133671 + CT-rich Low_complexity Low_complexity 2 75 0 297 0 0 0 chr12 137149580 137149613 -7132876 + (CA)n Simple_repeat Simple_repeat 2 34 0 1513 191 61 0 chr12 137149628 137149906 -7132583 - AluJb SINE Alu -17 295 1 1372 180 15 34 chr12 137150966 137151233 -7131256 - AluJo SINE Alu -13 299 38 2151 136 0 3 chr12 137151238 137151540 -7130949 - AluSx SINE Alu -11 301 1 242 333 14 48 chr12 137151702 137151849 -7130640 - MIR SINE MIR -56 206 65 2268 112 3 0 chr12 137152207 137152511 -7129978 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr12 137152644 137152672 -7129817 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr12 137153044 137153081 -7129408 + AT_rich Low_complexity Low_complexity 1 37 0 280 158 26 0 chr12 137153094 137153170 -7129319 + (TA)n Simple_repeat Simple_repeat 1 78 0 2236 91 0 36 chr12 137154449 137154758 -7127731 + AluSg SINE Alu 1 298 -12 414 236 23 152 chr12 137155325 137155719 -7126770 - MER65A LTR ERV1 -102 343 1 183 287 178 20 chr12 137155766 137155867 -7126622 - L3 LINE CR1 -105 1472 1356 666 318 134 33 chr12 137156023 137156514 -7125975 + MLT1K LTR MaLR 45 585 -3 615 143 0 0 chr12 137156917 137157001 -7125488 + FLAM SINE Alu 39 122 -21 329 187 75 127 chr12 137157139 137157273 -7125216 + MIR SINE MIR 3 129 -133 21 36 0 0 chr12 137157480 137157508 -7124981 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr12 137157904 137157939 -7124550 + AT_rich Low_complexity Low_complexity 1 35 0 298 313 62 9 chr12 137158320 137158432 -7124057 - MER5B DNA MER1_type -59 119 2 782 212 79 5 chr12 137159685 137159888 -7122601 + MER110 LTR ERV1 269 486 -5 681 165 30 45 chr12 137160254 137160387 -7122102 + FLAM_A SINE Alu 12 142 0 4013 102 9 0 chr12 137160407 137160948 -7121541 + L1PB1 LINE L1 5603 6148 -3 2729 126 99 2 chr12 137160978 137161422 -7121067 - L1MA4 LINE L1 -2 6298 5812 367 195 138 11 chr12 137162103 137162190 -7120299 - MER5A DNA MER1_type 0 189 92 296 366 99 9 chr12 137162736 137162949 -7119540 + MIR SINE MIR 23 254 -8 16269 190 48 39 chr12 137163224 137165541 -7116948 - L1PA15 LINE L1 -1 7602 5308 2138 118 69 36 chr12 137165541 137165904 -7116585 + THE1C LTR MaLR 1 375 0 16269 190 48 39 chr12 137165904 137168834 -7113655 - L1PA15 LINE L1 -2295 5308 2328 536 335 27 14 chr12 137169912 137170205 -7112284 - L1PA15 LINE L1 -7278 303 7 219 312 110 52 chr12 137170839 137171351 -7111138 - L2 LINE L2 -1476 1838 1242 190 337 146 0 chr12 137171978 137172067 -7110422 - L2 LINE L2 -25 3288 3187 299 268 144 81 chr12 137172774 137173121 -7109368 + MLT1L LTR MaLR 43 411 -204 378 0 0 0 chr12 137173686 137173728 -7108761 + (CA)n Simple_repeat Simple_repeat 2 43 0 2366 204 78 47 chr12 137175759 137176463 -7106026 + L1MC3 LINE L1 6830 7555 -230 1190 124 17 0 chr12 137176495 137176673 -7105816 + AluSg/x SINE Alu 123 303 -7 341 209 0 12 chr12 137176674 137176760 -7105729 + L1MD3 LINE L1 7792 7876 -119 183 338 0 13 chr12 137177047 137177124 -7105365 - MIR SINE MIR -99 163 88 910 270 17 59 chr12 137178517 137178873 -7103616 + MER58B DNA MER1_type 1 341 0 1734 181 99 19 chr12 137178954 137179319 -7103170 - MSTD LTR MaLR -2 394 1 333 306 63 9 chr12 137179963 137180074 -7102415 + L2 LINE L2 3153 3269 -3 440 278 91 26 chr12 137180079 137180309 -7102180 - MER102b DNA MER1_type -1 340 96 644 256 12 24 chr12 137181053 137181217 -7101272 - MIR SINE MIR -26 236 75 451 302 60 52 chr12 137181407 137181659 -7100830 + HAL1 LINE L1 43 296 -2211 476 241 82 85 chr12 137181820 137181994 -7100495 + HAL1 LINE L1 632 806 -1701 2264 95 0 30 chr12 137181994 137182299 -7100190 - AluY SINE Alu -15 296 1 476 241 82 85 chr12 137182299 137182440 -7100049 + HAL1 LINE L1 806 946 -1561 555 214 43 26 chr12 137182478 137182595 -7099894 + AluJb SINE Alu 185 303 -9 302 304 68 40 chr12 137182628 137182776 -7099713 + MER5B DNA MER1_type 27 178 0 259 209 149 0 chr12 137183204 137183271 -7099218 + MIR SINE MIR 96 172 -90 315 0 0 0 chr12 137183272 137183307 -7099182 + (T)n Simple_repeat Simple_repeat 1 35 0 608 232 28 34 chr12 137183509 137183686 -7098803 - MIR SINE MIR -73 189 14 454 294 104 18 chr12 137183839 137184060 -7098429 + MLT1E2 LTR MaLR 108 347 -279 688 83 0 10 chr12 137184060 137184156 -7098333 + AluY SINE Alu 3 97 -214 3701 26 0 0 chr12 137184156 137184584 -7097905 - L1P LINE L1 -867 5279 4852 5321 7 0 2 chr12 137184584 137185155 -7097334 + L1PA2 LINE L1 5566 6149 -6 1566 34 0 0 chr12 137185155 137185331 -7097158 + AluY SINE Alu 119 294 -17 835 261 122 8 chr12 137185331 137185576 -7096913 + MLT1E2 LTR MaLR 335 607 -19 272 221 26 13 chr12 137186319 137186396 -7096093 + MLT1K LTR MaLR 497 574 -14 829 158 63 17 chr12 137186923 137187175 -7095314 + MLT2B2 LTR ERVL 26 326 -189 333 0 0 0 chr12 137187312 137187349 -7095140 + (CA)n Simple_repeat Simple_repeat 2 38 0 337 218 39 155 chr12 137187990 137188196 -7094293 + MLT1K LTR MaLR 377 558 -30 346 252 47 16 chr12 137188439 137188566 -7093923 - MER94 DNA DNA -2 132 2 444 19 0 0 chr12 137188669 137188722 -7093767 + (CA)n Simple_repeat Simple_repeat 2 54 0 1495 148 74 34 chr12 137189350 137189674 -7092815 + MER44D DNA MER2_type 3 609 0 340 239 33 0 chr12 137189883 137189975 -7092514 + MLT1K LTR MaLR 144 238 -350 4253 154 74 29 chr12 137190644 137191399 -7091090 - L1MB1 LINE L1 -56 6133 5318 1935 141 0 55 chr12 137191399 137191711 -7090778 - AluSx SINE Alu -17 295 1 4253 154 74 29 chr12 137191711 137191948 -7090541 - L1MB1 LINE L1 -871 5318 5093 1127 231 27 0 chr12 137191943 137192199 -7090290 + L1MB1 LINE L1 4832 5094 -1052 * 398 224 65 90 chr12 137192532 137192701 -7089788 - MER112 DNA MER1_type -48 212 47 1677 187 0 19 chr12 137192701 137193011 -7089478 - AluJo SINE Alu -7 305 2 398 224 65 90 chr12 137193011 137193042 -7089447 - MER112 DNA MER1_type -213 47 17 769 259 196 30 chr12 137193398 137193827 -7088662 - Charlie8 DNA MER1_type -1912 505 6 352 276 58 41 chr12 137194223 137194387 -7088102 + LTR33 LTR ERVL 23 212 -309 1374 260 39 10 chr12 137194387 137194803 -7087686 - LTR16A LTR ERVL -2 448 21 574 289 85 7 chr12 137194830 137195100 -7087389 + LTR33 LTR ERVL 213 503 -18 230 216 91 34 chr12 137195325 137195413 -7087076 - MLT1I LTR MaLR 0 409 317 201 250 0 0 chr12 137196727 137196787 -7085702 + GA-rich Low_complexity Low_complexity 2 61 0 2635 151 32 61 chr12 137196793 137197351 -7085138 - LTR18B LTR ERVL -72 542 1 368 91 15 0 chr12 137197439 137197505 -7084984 + (CA)n Simple_repeat Simple_repeat 1 67 0 410 314 16 62 chr12 137197506 137197748 -7084741 - L2 LINE L2 -121 3151 2921 2303 117 33 25 chr12 137197752 137198112 -7084377 + THE1B LTR MaLR 1 363 -1 804 281 53 12 chr12 137198339 137198585 -7083904 - MIR SINE MIR -1 261 6 483 318 0 17 chr12 137198700 137198873 -7083616 - MIR SINE MIR -15 247 78 314 333 99 20 chr12 137200413 137200614 -7081875 - MIR SINE MIR -10 252 36 1841 158 34 3 chr12 137200696 137200987 -7081502 - AluJb SINE Alu -12 300 1 497 138 35 0 chr12 137202436 137202523 -7079966 + LTR41 LTR ERVL 1 90 -683 21 0 0 0 chr12 137202628 137202649 -7079840 + AT_rich Low_complexity Low_complexity 1 21 0 640 207 56 17 chr12 137203813 137203992 -7078497 - MER53 DNA DNA 0 189 4 245 333 0 0 chr12 137204224 137204302 -7078187 - MIR3 SINE MIR -6 202 125 22 0 0 0 chr12 137205237 137205259 -7077230 + AT_rich Low_complexity Low_complexity 1 22 0 282 186 0 0 chr12 137205623 137205688 -7076801 - L1MA4 LINE L1 -128 6175 6108 282 78 188 0 chr12 137205684 137205748 -7076741 + L1MA4A LINE L1 6222 6297 -6 1597 137 84 0 chr12 137205883 137206174 -7076315 + AluSq SINE Alu 1 313 0 21 36 0 0 chr12 137206309 137206337 -7076152 + AT_rich Low_complexity Low_complexity 1 28 0 186 103 0 0 chr12 137207264 137207293 -7075196 + (TA)n Simple_repeat Simple_repeat 1 29 0 305 153 68 0 chr12 137207361 137207420 -7075069 - L1MC3 LINE L1 -805 6980 6918 7141 212 53 37 chr12 137207452 137208996 -7073493 - L1MC3 LINE L1 -17 8186 6396 2579 48 3 13 chr12 137208996 137209306 -7073183 - AluY SINE Alu -4 307 1 7141 212 53 37 chr12 137209306 137209806 -7072683 - L1MC3 LINE L1 -1807 6396 5906 726 296 60 9 chr12 137209806 137210039 -7072450 - MLT1C LTR MaLR 0 467 223 3189 239 53 42 chr12 137210039 137210134 -7072355 - L1MC3 LINE L1 -762 5802 5710 2294 114 0 18 chr12 137210134 137210477 -7072012 + L1PB1 LINE L1 5814 6150 -1 3189 239 53 42 chr12 137210477 137211689 -7070800 - L1MC3 LINE L1 -854 5710 4481 1507 264 55 19 chr12 137211684 137212196 -7070293 - L1MC3 LINE L1 -5515 530 1 * 272 268 14 0 chr12 137212212 137212283 -7070206 + MER112 DNA MER1_type 164 235 -25 192 77 0 0 chr12 137214427 137214453 -7068036 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1032 266 60 62 chr12 137214855 137215284 -7067205 + LTR33 LTR ERVL 2 431 -90 2282 101 6 19 chr12 137215284 137215600 -7066889 - AluSp SINE Alu -1 312 1 1032 266 60 62 chr12 137215600 137215689 -7066800 + LTR33 LTR ERVL 431 519 -2 456 211 203 0 chr12 137215995 137216123 -7066366 - MLT1F1 LTR MaLR -228 339 186 * 584 262 136 10 chr12 137216105 137216311 -7066178 + MLT1F1 LTR MaLR 334 565 -2 769 280 86 27 chr12 137216313 137216760 -7065729 + MLT1F1-int LTR MaLR 5 601 -770 2336 90 3 16 chr12 137217021 137217331 -7065158 + AluSq SINE Alu 2 307 -6 238 355 11 0 chr12 137217350 137217443 -7065046 + MLT1F1-int LTR MaLR 756 849 -522 1349 203 21 21 chr12 137218784 137219075 -7063414 - AluJo SINE Alu -21 291 1 617 200 36 0 chr12 137219085 137219195 -7063294 - FLAM_C SINE Alu -19 124 11 279 275 25 0 chr12 137219754 137219834 -7062655 + MER67D LTR ERV1 1 82 -432 1442 185 63 57 chr12 137219875 137220210 -7062279 + MER67C LTR ERV1 67 403 -307 586 267 89 6 chr12 137220904 137221084 -7061405 + MIR SINE MIR 14 208 -54 931 94 8 0 chr12 137221413 137221540 -7060949 + AluSp/q SINE Alu 179 306 -7 557 272 80 24 chr12 137221820 137221965 -7060524 + MIR SINE MIR 28 190 -72 3292 143 43 2 chr12 137221965 137222497 -7059992 + MER41C LTR ERV1 1 554 0 557 272 80 24 chr12 137222497 137222564 -7059925 + MIR SINE MIR 190 252 -10 215 295 98 25 chr12 137222670 137222792 -7059697 - L2 LINE L2 0 3313 3183 2211 96 10 3 chr12 137223626 137223927 -7058562 + AluSc SINE Alu 1 303 -6 185 81 0 27 chr12 137223934 137223971 -7058518 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 253 224 102 95 chr12 137226644 137226791 -7055698 + MLT1J LTR MaLR 33 180 -331 954 184 0 12 chr12 137227019 137227187 -7055302 + FRAM SINE Alu 1 163 -13 21 0 0 0 chr12 137228979 137229000 -7053489 + AT_rich Low_complexity Low_complexity 1 21 0 230 21 85 0 chr12 137229156 137229203 -7053286 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2590 207 96 37 chr12 137229211 137230205 -7052284 + L1MD2 LINE L1 4896 5967 -392 627 195 40 27 chr12 137230244 137230393 -7052096 + L1MD2 LINE L1 6194 6344 -15 182 372 70 8 chr12 137230570 137230699 -7051790 + L2 LINE L2 3134 3270 -2 351 0 0 0 chr12 137230798 137230837 -7051652 + (TG)n Simple_repeat Simple_repeat 2 40 0 388 268 54 0 chr12 137231037 137231149 -7051340 + MIR SINE MIR 3 120 -142 1677 236 109 13 chr12 137231365 137231823 -7050666 + MLT1D LTR MaLR 1 502 -3 2109 121 3 0 chr12 137233147 137233429 -7049060 - AluSx SINE Alu -27 285 3 2456 206 131 41 chr12 137233482 137233583 -7048906 - L1MC4a LINE L1 -1126 6682 6591 340 71 36 0 chr12 137233583 137233639 -7048850 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 2456 206 131 41 chr12 137233639 137233849 -7048640 - L1MC4a LINE L1 -1217 6591 6401 2626 40 3 3 chr12 137233849 137234153 -7048336 - AluY SINE Alu -6 305 2 2456 206 131 41 chr12 137234153 137234984 -7047505 - L1MC4a LINE L1 -1407 6401 5334 311 347 104 6 chr12 137235565 137235738 -7046751 - MIR SINE MIR -70 192 3 276 314 34 0 chr12 137235768 137235886 -7046603 + L1ME LINE L1 5737 5858 -308 21 57 0 0 chr12 137235911 137235946 -7046543 + AT_rich Low_complexity Low_complexity 1 35 0 258 105 0 0 chr12 137236333 137236371 -7046118 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 383 333 0 0 chr12 137236372 137236492 -7045997 - L2 LINE L2 -14 3299 3180 279 301 14 0 chr12 137236828 137236901 -7045588 - L2 LINE L2 -1 3312 3239 1192 238 92 100 chr12 137237623 137238253 -7044236 - MLT1E2 LTR MaLR 0 626 2 382 312 14 21 chr12 137238484 137238671 -7043818 + MIR SINE MIR 1 184 -24 * 452 288 53 74 chr12 137238637 137239015 -7043474 - L2 LINE L2 -27 3286 2917 222 296 70 78 chr12 137239331 137239574 -7042915 - L2 LINE L2 -619 2695 2455 309 270 105 26 chr12 137240240 137240392 -7042097 - L1M LINE L1 -820 5422 5259 505 207 66 8 chr12 137240704 137240825 -7041664 + MER63 DNA MER1_type 1 754 -308 240 276 0 26 chr12 137240841 137240917 -7041572 - L2 LINE L2 -257 3056 2983 200 256 24 24 chr12 137242130 137242212 -7040277 + L2 LINE L2 3231 3312 -1 641 159 24 0 chr12 137242515 137242641 -7039848 - L1MA7 LINE L1 -4 6287 6159 1014 173 5 0 chr12 137242645 137242836 -7039653 + L1M2 LINE L1 5471 5662 -629 678 338 91 45 chr12 137243010 137243472 -7039017 + L2 LINE L2 2826 3308 -5 238 226 104 38 chr12 137245484 137245590 -7036899 - MLT1L LTR MaLR 0 615 503 296 289 117 11 chr12 137245645 137245825 -7036664 - MLT1L LTR MaLR -211 404 206 283 419 41 44 chr12 137246035 137246350 -7036139 - L2 LINE L2 -27 3245 2932 1472 185 109 84 chr12 137247302 137247898 -7034591 + LTR36 LTR ERV1 1 611 0 404 324 0 7 chr12 137247939 137248081 -7034408 + MIR SINE MIR 122 262 0 1302 134 5 40 chr12 137248197 137248420 -7034069 + AluJo SINE Alu 12 226 -86 26 30 0 0 chr12 137250605 137250638 -7031851 + AT_rich Low_complexity Low_complexity 1 33 0 222 296 0 0 chr12 137251249 137251303 -7031186 + L2 LINE L2 3219 3272 0 1432 103 43 8 chr12 137251467 137251720 -7030769 - L1MA5A LINE L1 -6 6291 6030 610 284 138 16 chr12 137251921 137252291 -7030198 - MLT1L LTR MaLR -8 607 193 617 258 124 39 chr12 137252557 137252840 -7029649 - MLT1K LTR MaLR -91 497 191 25 31 0 0 chr12 137253242 137253274 -7029215 + AT_rich Low_complexity Low_complexity 1 32 0 8659 179 40 69 chr12 137253624 137256100 -7026389 + Tigger1 DNA MER2_type 1 2404 -14 1959 124 0 4 chr12 137256143 137256417 -7026072 - AluSg SINE Alu -37 273 1 368 136 0 102 chr12 137256466 137256554 -7025935 + L1MC2 LINE L1 6249 6327 -17 1485 167 75 11 chr12 137257039 137257200 -7025289 - AluJo SINE Alu -12 300 151 414 0 0 0 chr12 137257200 137257246 -7025243 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1485 167 75 11 chr12 137257246 137257366 -7025123 - AluJo SINE Alu -161 151 1 1296 196 15 128 chr12 137258335 137258651 -7023838 - MLT1A1 LTR MaLR -3 362 101 6115 75 41 15 chr12 137258651 137259727 -7022762 - L1PA13 LINE L1 0 6163 5054 1296 196 15 128 chr12 137259727 137259818 -7022671 - MLT1A1 LTR MaLR -264 101 1 912 230 37 5 chr12 137260081 137260298 -7022191 - MER58A DNA MER1_type 0 224 1 214 195 0 0 chr12 137260324 137260365 -7022124 + A-rich Low_complexity Low_complexity 1 41 0 218 354 31 24 chr12 137261603 137261730 -7020759 + L2 LINE L2 3145 3272 0 366 300 17 65 chr12 137261937 137262167 -7020322 - L2 LINE L2 -212 3101 2883 1170 302 123 29 chr12 137262218 137262361 -7020128 - L2 LINE L2 -5 3308 3180 1574 200 37 92 chr12 137262361 137262852 -7019637 + MLT1C LTR MaLR 1 464 -3 1170 302 123 29 chr12 137262852 137263724 -7018765 - L2 LINE L2 -133 3180 2200 1125 255 115 25 chr12 137264608 137265094 -7017395 - MLT1F LTR MaLR 0 542 13 22 0 0 0 chr12 137265369 137265391 -7017098 + AT_rich Low_complexity Low_complexity 1 22 0 237 287 111 46 chr12 137265583 137265691 -7016798 + L2 LINE L2 3153 3267 -5 218 308 86 0 chr12 137266335 137266419 -7016070 + MIR SINE MIR 42 132 -76 628 332 54 41 chr12 137266436 137266825 -7015664 - L2 LINE L2 -1 3312 2919 925 269 8 4 chr12 137267771 137268012 -7014477 + MER69 DNA AcHobo 71 312 -2214 236 211 0 0 chr12 137268012 137268050 -7014439 + Tigger3(Golem) DNA MER2_type 2 39 -2990 392 305 57 7 chr12 137268792 137268933 -7013556 - MIR SINE MIR -17 245 98 2172 122 3 0 chr12 137268946 137269242 -7013247 - AluSp SINE Alu -16 297 1 487 244 49 18 chr12 137269267 137269431 -7013058 - L1MEc LINE L1 -2499 4442 4274 478 305 4 13 chr12 137269480 137269716 -7012773 - L1MEc LINE L1 -2687 4254 4021 255 254 0 0 chr12 137269727 137269782 -7012707 + CT-rich Low_complexity Low_complexity 4 58 0 1735 244 65 59 chr12 137269986 137271269 -7011220 - L1MEc LINE L1 -3014 3927 2641 249 178 0 0 chr12 137271582 137271627 -7010862 - L1MEc LINE L1 -6269 154 110 1033 128 53 5 chr12 137271724 137271912 -7010577 + MSTA LTR MaLR 184 380 -48 1884 196 34 40 chr12 137272640 137273146 -7009343 - MLT1D LTR MaLR 0 505 3 3484 141 63 14 chr12 137274465 137275158 -7007331 + Tigger3(Golem) DNA MER2_type 2302 3028 -1 205 225 28 0 chr12 137275158 137275229 -7007260 + (TA)n Simple_repeat Simple_repeat 1 73 0 324 290 57 42 chr12 137275235 137275428 -7007061 + L1MEc LINE L1 129 324 -6072 451 302 24 41 chr12 137275737 137275906 -7006583 - MIR3 SINE MIR -23 185 20 379 240 52 10 chr12 137276047 137276143 -7006346 + MER91C DNA MER1_type 1 100 -40 704 287 8 0 chr12 137276181 137276428 -7006061 - L1M4 LINE L1 -1042 5104 4856 1213 217 41 34 chr12 137276648 137277053 -7005436 + L1ME LINE L1 5197 5601 -565 1099 191 0 15 chr12 137277178 137277382 -7005107 - MLT1A1 LTR MaLR -160 205 5 661 250 48 0 chr12 137278397 137278565 -7003924 + MER3 DNA MER1_type 3 131 -78 335 342 42 58 chr12 137278980 137279220 -7003269 + MLT1H LTR MaLR 114 349 -200 1385 283 23 0 chr12 137279278 137279856 -7002633 + L1MEc LINE L1 2175 2726 -3489 248 371 43 0 chr12 137279856 137279996 -7002493 + MIR SINE MIR 73 218 -44 218 324 40 0 chr12 137280015 137280089 -7002400 - L2 LINE L2 0 3313 3237 211 252 70 42 chr12 137280215 137280358 -7002131 - L2 LINE L2 -312 2960 2814 4708 182 25 4 chr12 137280410 137281382 -7001107 + L1MA9 LINE L1 5320 6311 -1 306 301 122 0 chr12 137281393 137281549 -7000940 - L2 LINE L2 -556 2758 2584 1822 128 8 0 chr12 137281713 137281970 -7000519 - AluSx SINE Alu -1 311 53 682 168 0 0 chr12 137282321 137282428 -7000061 - FRAM SINE Alu -25 151 45 742 262 196 36 chr12 137282993 137283329 -6999160 + L2 LINE L2 2420 2809 -505 267 224 0 0 chr12 137283334 137283392 -6999097 + L1MD3 LINE L1 7707 7764 -231 840 284 99 45 chr12 137283523 137283847 -6998642 + L2 LINE L2 2777 3082 -231 3802 74 6 22 chr12 137283847 137283922 -6998567 + L1PB2 LINE L1 5614 5689 -462 2220 80 0 27 chr12 137283922 137284267 -6998222 + AluY SINE Alu 1 311 0 3802 74 6 22 chr12 137284267 137284733 -6997756 + L1PB2 LINE L1 5689 6146 -5 1516 99 9 5 chr12 137284516 137284738 -6997751 + L1PB2 LINE L1 5929 6151 0 840 284 99 45 chr12 137284733 137284903 -6997586 + L2 LINE L2 3082 3301 -12 * 2155 124 0 0 chr12 137284935 137285233 -6997256 - AluSx SINE Alu -14 298 1 299 303 28 48 chr12 137285595 137285740 -6996749 - MIR SINE MIR -40 222 81 246 269 43 11 chr12 137285785 137285878 -6996611 - MLT1K LTR MaLR -7 581 486 1190 172 37 10 chr12 137285879 137286499 -6995990 + L1MC1 LINE L1 5648 6332 -1 557 333 83 25 chr12 137286521 137286881 -6995608 - MLT1K LTR MaLR -118 470 90 24 0 0 0 chr12 137287432 137287456 -6995033 + AT_rich Low_complexity Low_complexity 1 24 0 841 111 0 74 chr12 137288333 137288468 -6994021 - FRAM SINE Alu -18 158 34 389 304 71 8 chr12 137288982 137289162 -6993327 + MIR SINE MIR 3 191 -71 222 267 0 0 chr12 137289542 137289602 -6992887 + (TG)n Simple_repeat Simple_repeat 1 60 0 2118 134 7 0 chr12 137289665 137289972 -6992517 - AluSx SINE Alu -3 309 1 2231 137 111 49 chr12 137290240 137290532 -6991957 + L1PA16 LINE L1 5657 5986 -180 1926 134 10 13 chr12 137290532 137290830 -6991659 - AluSx SINE Alu -15 297 1 2231 137 111 49 chr12 137290830 137290968 -6991521 + L1PA16 LINE L1 5986 6114 -52 207 304 0 0 chr12 137290977 137291033 -6991456 + L2 LINE L2 3233 3288 -25 198 103 0 0 chr12 137291829 137291858 -6990631 + (T)n Simple_repeat Simple_repeat 1 29 0 1017 190 57 19 chr12 137292150 137292361 -6990128 + MER20 DNA MER1_type 1 219 0 217 240 0 0 chr12 137292800 137292850 -6989639 + (TATG)n Simple_repeat Simple_repeat 3 52 0 326 23 23 0 chr12 137293758 137293801 -6988688 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 574 311 75 22 chr12 137293807 137294125 -6988364 - L2 LINE L2 -1 3312 2978 2184 167 50 3 chr12 137294139 137294517 -6987972 + MSTB1 LTR MaLR 37 432 0 853 255 45 83 chr12 137294524 137294967 -6987522 - L2 LINE L2 -337 2977 2552 303 133 0 67 chr12 137294974 137295034 -6987455 - L1MB8 LINE L1 -1 6177 6122 241 289 156 17 chr12 137295676 137295849 -6986640 - LTR33A LTR ERVL 0 523 327 244 348 27 0 chr12 137295853 137295965 -6986524 - MLT1L LTR MaLR -161 454 340 904 193 35 75 chr12 137296237 137296465 -6986024 + MER20 DNA MER1_type 1 219 0 393 22 0 0 chr12 137296476 137296522 -6985967 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 611 15 0 0 chr12 137296522 137296590 -6985899 - L1PA3 LINE L1 -10 6145 6078 359 0 0 0 chr12 137296590 137296630 -6985859 + L1PA3 LINE L1 6094 6133 -22 * 595 121 0 11 chr12 137296613 137296711 -6985778 + L1M1 LINE L1 5644 5737 -431 229 216 59 0 chr12 137297619 137297670 -6984819 - MIR SINE MIR -188 74 21 394 279 9 9 chr12 137298427 137298558 -6983931 + MIR SINE MIR 5 136 -72 535 278 58 10 chr12 137298736 137298941 -6983548 + Charlie8 DNA MER1_type 35 249 -2168 485 229 96 12 chr12 137298977 137299156 -6983333 - MIR SINE MIR -62 146 7 3151 155 4 7 chr12 137299253 137299790 -6982699 + L1MA4A LINE L1 5584 6118 -185 358 214 19 48 chr12 137299791 137299894 -6982595 + L1MA4A LINE L1 6181 6280 -23 2239 53 0 4 chr12 137300042 137300308 -6982181 - AluY SINE Alu -11 300 36 2396 104 0 0 chr12 137300395 137300704 -6981785 - AluSc SINE Alu 0 309 1 183 206 48 63 chr12 137300801 137300864 -6981625 - L2 LINE L2 -1752 1562 1501 1017 327 75 33 chr12 137301219 137302115 -6980374 + L2 LINE L2 2383 3306 -7 295 331 42 91 chr12 137302362 137302649 -6979840 - L2 LINE L2 -30 3242 2970 680 277 44 80 chr12 137303019 137303384 -6979105 + MLT1J LTR MaLR 1 352 -159 210 322 9 17 chr12 137303437 137303552 -6978937 + MIR SINE MIR 124 237 -25 278 263 0 0 chr12 137303850 137303926 -6978563 - MIR SINE MIR -119 143 68 2407 122 59 6 chr12 137304594 137304948 -6977541 - THE1C LTR MaLR -2 373 1 844 332 38 36 chr12 137305120 137305563 -6976926 + L2 LINE L2 1948 2391 -923 1119 225 168 48 chr12 137305587 137306004 -6976485 + MLT1C LTR MaLR 1 467 0 1055 283 155 33 chr12 137306004 137306791 -6975698 + L2 LINE L2 2422 3311 -2 1954 218 89 19 chr12 137307057 137307529 -6974960 - MLT1D LTR MaLR 0 505 1 391 282 70 52 chr12 137307639 137307964 -6974525 + L2 LINE L2 2728 3056 -257 336 274 82 92 chr12 137308511 137308817 -6973672 - LTR16C LTR ERVL 0 491 189 21 0 0 0 chr12 137309812 137309833 -6972656 + AT_rich Low_complexity Low_complexity 1 21 0 550 277 19 7 chr12 137310346 137310501 -6971988 + MIR SINE MIR 6 162 -100 256 103 26 0 chr12 137310502 137310541 -6971948 + MLT1I LTR MaLR 1 40 -369 568 217 43 71 chr12 137310672 137310856 -6971633 + MLT1I LTR MaLR 231 409 0 258 268 28 28 chr12 137310856 137310927 -6971562 + MIR SINE MIR 159 229 -33 230 259 144 29 chr12 137311061 137311200 -6971289 + MIR3 SINE MIR 20 174 -34 3547 183 27 0 chr12 137311228 137311855 -6970634 - MER73 LTR ERVL 0 644 1 303 343 0 9 chr12 137311996 137312104 -6970385 + MIR SINE MIR 35 141 -121 395 294 37 0 chr12 137312123 137312232 -6970257 - L2 LINE L2 -12 3301 3189 1148 211 62 79 chr12 137312240 137312456 -6970033 - Charlie4a DNA MER1_type -1460 501 292 2685 73 45 20 chr12 137312456 137312811 -6969678 + THE1B LTR MaLR 1 364 0 1148 211 62 79 chr12 137312811 137312963 -6969526 - Charlie4a DNA MER1_type -1669 292 139 283 295 27 55 chr12 137313203 137313386 -6969103 - MLT1K LTR MaLR -340 248 71 652 226 153 6 chr12 137314513 137314690 -6967799 - MER3 DNA MER1_type -6 203 1 41 21 0 0 chr12 137315107 137315155 -6967334 + AT_rich Low_complexity Low_complexity 1 48 0 4316 62 53 0 chr12 137316766 137317635 -6964854 - L1P3 LINE L1 -469 5685 4767 3199 60 0 0 chr12 137317635 137318017 -6964472 + L1PA7 LINE L1 5768 6150 -4 294 351 71 7 chr12 137318190 137318344 -6964145 + MIR SINE MIR 9 172 -90 351 274 126 0 chr12 137318538 137318673 -6963816 - MIR3 SINE MIR -22 186 35 233 261 64 85 chr12 137318871 137319059 -6963430 - MLT1K LTR MaLR -4 584 401 326 267 133 9 chr12 137319390 137319495 -6962994 - L2 LINE L2 -3 3269 3152 2306 171 81 0 chr12 137319838 137320235 -6962254 - MSTB1 LTR MaLR 0 432 4 1540 252 51 63 chr12 137320655 137321206 -6961283 - MER77 LTR ERV1 -9 596 53 324 228 88 18 chr12 137322308 137322422 -6960067 + MER113 DNA MER1_type? 1 122 -399 683 175 60 55 chr12 137323312 137323495 -6958994 - MER53 DNA DNA 0 189 6 2382 128 39 28 chr12 137323882 137324242 -6958247 - THE1B LTR MaLR 0 364 1 12095 108 4 6 chr12 137324242 137325824 -6956665 - THE1B-int LTR MaLR 0 1580 1 2197 148 33 39 chr12 137325826 137326190 -6956299 - THE1B LTR MaLR -2 362 1 342 224 71 0 chr12 137326918 137327003 -6955486 + L3 LINE CR1 754 844 -733 212 353 20 33 chr12 137327056 137327209 -6955280 + L3 LINE CR1 843 993 -584 452 254 121 18 chr12 137327363 137327528 -6954961 + Charlie8 DNA MER1_type 95 276 -2141 369 278 99 102 chr12 137327692 137328034 -6954455 + L3 LINE CR1 1069 1409 -168 363 277 76 0 chr12 137328048 137328167 -6954322 + MIR SINE MIR 47 174 -88 190 375 75 25 chr12 137328570 137328690 -6953799 + L2 LINE L2 3123 3248 -24 862 166 11 0 chr12 137328719 137328894 -6953595 + GA-rich Low_complexity Low_complexity 3 179 0 216 0 0 0 chr12 137329084 137329108 -6953381 + (T)n Simple_repeat Simple_repeat 1 24 0 468 315 88 9 chr12 137329257 137329473 -6953016 - MIR SINE MIR -21 241 9 419 351 137 19 chr12 137330434 137330850 -6951639 - MLT1K LTR MaLR -17 571 107 1662 277 58 2 chr12 137331074 137331543 -6950946 - MLT1F1 LTR MaLR 0 567 73 519 135 73 10 chr12 137331852 137331948 -6950541 - MSTB1 LTR MaLR -143 289 188 219 150 0 0 chr12 137331948 137331988 -6950501 + (T)n Simple_repeat Simple_repeat 1 40 0 30257 27 14 1 chr12 137331988 137338016 -6944473 - L1HS LINE L1 0 6155 4 1200 119 15 25 chr12 137338029 137338231 -6944258 - MSTB1 LTR MaLR -232 200 1 654 234 4 123 chr12 137338262 137338497 -6943992 - MIR SINE MIR -11 251 45 6592 214 30 1 chr12 137339352 137340822 -6941667 - L1 LINE L1 -1051 5095 3584 5637 140 29 7 chr12 137340866 137341911 -6940578 + L1PA16 LINE L1 5098 6166 0 2364 91 0 0 chr12 137342968 137343265 -6939224 + AluSg SINE Alu 1 297 -13 206 343 82 0 chr12 137343444 137343517 -6938972 - MIR SINE MIR -82 180 102 2624 117 16 16 chr12 137344825 137345200 -6937289 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr12 137345471 137345498 -6936991 + (T)n Simple_repeat Simple_repeat 1 27 0 246 128 0 0 chr12 137345918 137345957 -6936532 + (TATG)n Simple_repeat Simple_repeat 4 42 0 242 156 0 0 chr12 137345959 137346004 -6936485 + LTR66 LTR ERVL 394 438 -172 246 283 0 0 chr12 137347374 137347434 -6935055 - MER113 DNA MER1_type? -456 65 6 521 213 112 24 chr12 137347969 137348138 -6934351 - MER117 DNA MER1_type -3 194 11 1668 187 0 7 chr12 137349927 137350226 -6932263 - AluJb SINE Alu -15 297 1 628 204 10 70 chr12 137350236 137350437 -6932052 - L1MA10 LINE L1 -2 6332 6144 21 0 0 0 chr12 137350550 137350571 -6931918 + AT_rich Low_complexity Low_complexity 1 21 0 734 168 16 8 chr12 137350572 137350697 -6931792 - AluJb SINE Alu -13 299 174 379 302 0 9 chr12 137351232 137351348 -6931141 - Charlie8 DNA MER1_type -2205 212 98 224 207 35 0 chr12 137351654 137351712 -6930777 + (TA)n Simple_repeat Simple_repeat 2 61 0 483 300 84 5 chr12 137351847 137352037 -6930452 + L2 LINE L2 3109 3313 0 282 230 35 11 chr12 137352760 137352847 -6929642 - HAL1b LINE L1 -67 1281 1193 283 333 8 8 chr12 137353126 137353249 -6929240 - L1ME3 LINE L1 -31 6131 6009 285 309 27 0 chr12 137353286 137353396 -6929093 - L1ME3 LINE L1 -466 5655 5543 266 219 42 17 chr12 137353427 137353546 -6928943 + (TA)n Simple_repeat Simple_repeat 1 122 0 39566 74 12 9 chr12 137353633 137359759 -6922730 - L1PA6 LINE L1 -2 6152 11 459 234 0 0 chr12 137359881 137360052 -6922437 + (TG)n Simple_repeat Simple_repeat 2 172 0 618 207 0 0 chr12 137360065 137360244 -6922245 + (TG)n Simple_repeat Simple_repeat 2 180 0 765 183 0 2 chr12 137360266 137360684 -6921805 + (TG)n Simple_repeat Simple_repeat 1 416 0 4198 189 21 25 chr12 137361153 137362060 -6920429 - L1MB7 LINE L1 0 6184 5282 254 337 11 0 chr12 137362231 137362320 -6920169 + MER102b DNA MER1_type 252 341 0 22 0 0 0 chr12 137362797 137362819 -6919670 + AT_rich Low_complexity Low_complexity 1 22 0 2297 124 21 32 chr12 137363337 137363716 -6918773 - THE1C LTR MaLR 0 375 1 605 297 166 56 chr12 137364132 137364983 -6917506 - L2 LINE L2 -26 3246 2283 1956 145 14 3 chr12 137365321 137365610 -6916879 - AluSx SINE Alu -20 292 1 285 200 31 15 chr12 137365847 137365912 -6916577 - MLT1B LTR MaLR -324 66 1 381 261 23 0 chr12 137366202 137366290 -6916199 + MIR SINE MIR 93 182 -80 3554 137 21 17 chr12 137366290 137366815 -6915674 + MER1A DNA MER1_type 1 527 0 806 247 114 4 chr12 137366953 137367180 -6915309 + MIR SINE MIR 5 256 -6 243 287 43 61 chr12 137367373 137367537 -6914952 - MLT1J2 LTR MaLR -218 232 72 571 234 42 36 chr12 137368502 137368694 -6913795 - L1MC4a LINE L1 -1844 5964 5772 252 301 43 21 chr12 137369844 137369937 -6912552 - L2 LINE L2 -18 3295 3201 755 259 54 49 chr12 137370078 137370111 -6912378 + MER113 DNA MER1_type? 68 99 -422 1665 130 137 8 chr12 137370111 137370373 -6912116 - AluSx SINE Alu -6 296 1 755 259 54 49 chr12 137370373 137370748 -6911741 + MER113 DNA MER1_type? 99 478 -43 567 295 95 10 chr12 137371030 137371230 -6911259 + MIR SINE MIR 46 262 0 260 302 92 57 chr12 137372295 137372440 -6910049 - MER5B DNA MER1_type -33 156 1 197 267 23 58 chr12 137372670 137372756 -6909733 - L2 LINE L2 0 3272 3190 2305 112 19 48 chr12 137373019 137373328 -6909161 - THE1B LTR MaLR 0 364 66 2317 129 48 25 chr12 137373328 137373684 -6908805 - THE1B LTR MaLR 0 364 1 2305 112 19 48 chr12 137373684 137373749 -6908740 - THE1B LTR MaLR -298 66 1 886 222 0 0 chr12 137373881 137374048 -6908441 - AluJb SINE Alu -12 300 134 3530 88 15 0 chr12 137374602 137375056 -6907433 - L1PA13 LINE L1 -7 6156 5696 2187 136 0 0 chr12 137375517 137375826 -6906663 + AluSg SINE Alu 1 309 -1 2108 119 0 3 chr12 137376700 137376986 -6905503 + AluSx SINE Alu 22 306 -6 300 371 59 0 chr12 137377072 137377258 -6905231 - MIR SINE MIR -28 234 38 180 182 0 0 chr12 137377676 137377720 -6904769 + GA-rich Low_complexity Low_complexity 1 44 0 403 186 88 20 chr12 137378028 137378130 -6904359 - MLT1K LTR MaLR -339 249 141 2184 219 27 52 chr12 137378148 137378665 -6903824 - MLT1D LTR MaLR 0 505 2 405 278 81 56 chr12 137379295 137379529 -6902960 + L2 LINE L2 3032 3271 -1 1893 158 0 7 chr12 137379888 137380185 -6902304 + AluSx SINE Alu 1 295 -17 537 270 170 6 chr12 137380418 137380577 -6901912 + MER58A DNA MER1_type 40 224 0 1230 196 5 9 chr12 137381022 137381246 -6901243 - L1PB4 LINE L1 0 6156 5934 540 0 0 0 chr12 137382864 137382924 -6899565 + (TTTTA)n Simple_repeat Simple_repeat 2 61 0 599 213 0 19 chr12 137382938 137383046 -6899443 - FLAM_C SINE Alu -36 107 2 520 266 76 5 chr12 137383144 137383328 -6899161 - MLT1L LTR MaLR -76 539 343 21 0 0 0 chr12 137383370 137383391 -6899098 + AT_rich Low_complexity Low_complexity 1 21 0 2037 132 3 3 chr12 137383889 137384184 -6898305 - AluSx SINE Alu -15 297 3 225 195 23 115 chr12 137384217 137384304 -6898185 + Charlie8 DNA MER1_type 96 174 -2243 280 308 13 0 chr12 137384774 137384852 -6897637 - MIR SINE MIR -90 172 94 1723 104 0 5 chr12 137385904 137386126 -6896363 + AluSg SINE Alu 1 221 -89 589 259 51 39 chr12 137386882 137387044 -6895445 + MER113 DNA MER1_type? 262 430 -91 2580 104 11 8 chr12 137387044 137387398 -6895091 - THE1A LTR MaLR 0 355 1 589 259 51 39 chr12 137387398 137387490 -6894999 + MER113 DNA MER1_type? 430 519 -2 225 0 0 0 chr12 137387628 137387653 -6894836 + (CA)n Simple_repeat Simple_repeat 2 26 0 1036 249 65 42 chr12 137388168 137388597 -6893892 + MER113 DNA MER1_type? 73 511 -10 586 333 51 23 chr12 137388630 137389021 -6893468 + MLT1L LTR MaLR 122 523 -92 2220 129 0 0 chr12 137389026 137389329 -6893160 - AluSx SINE Alu -9 303 1 681 24 0 0 chr12 137389657 137389740 -6892749 + (CA)n Simple_repeat Simple_repeat 2 84 0 282 276 9 52 chr12 137389944 137390060 -6892429 - MLT2E LTR ERVL -65 563 453 281 357 27 0 chr12 137390378 137390490 -6891999 - L2 LINE L2 0 3313 3199 259 210 12 12 chr12 137390712 137390793 -6891696 + GA-rich Low_complexity Low_complexity 4 84 0 * 890 138 11 17 chr12 137390778 137390959 -6891530 + G-rich Low_complexity Low_complexity 1 180 0 261 246 108 136 chr12 137393559 137394066 -6888423 + LTR33A LTR ERVL 12 504 -19 1305 217 7 27 chr12 137394103 137394403 -6888086 - MLT1A2 LTR MaLR -12 362 69 631 287 123 23 chr12 137394818 137395335 -6887154 + L1ME3 LINE L1 5306 5886 -276 24 32 0 0 chr12 137395363 137395394 -6887095 + AT_rich Low_complexity Low_complexity 1 31 0 467 263 76 6 chr12 137395467 137395638 -6886851 + MER113 DNA MER1_type? 231 413 -108 659 217 56 110 chr12 137395897 137396271 -6886218 + MLT1F1 LTR MaLR 172 525 -42 2161 106 26 3 chr12 137396375 137396677 -6885812 - AluSc SINE Alu 0 309 1 21 0 0 0 chr12 137396680 137396701 -6885788 + AT_rich Low_complexity Low_complexity 1 21 0 382 185 0 0 chr12 137397832 137397897 -6884592 - MLT1A2 LTR MaLR -300 65 1 350 276 38 9 chr12 137398113 137398218 -6884271 + L2 LINE L2 3202 3309 -4 351 248 212 0 chr12 137399132 137399245 -6883244 + MIR SINE MIR 113 249 -13 2552 166 34 6 chr12 137399310 137400021 -6882468 - L1P5 LINE L1 -642 5512 4781 454 270 44 13 chr12 137400053 137400212 -6882277 + Charlie8 DNA MER1_type 338 501 -1916 337 317 40 0 chr12 137401075 137401176 -6881313 - L2 LINE L2 -6 3307 3203 564 291 19 0 chr12 137401234 137401392 -6881097 - MIR SINE MIR -29 233 73 336 348 110 14 chr12 137401521 137401940 -6880549 - L2 LINE L2 -358 2956 2498 27 0 0 0 chr12 137402227 137402254 -6880235 + AT_rich Low_complexity Low_complexity 1 27 0 266 333 137 12 chr12 137402294 137402462 -6880027 - MIR SINE MIR -35 227 39 315 0 0 0 chr12 137402472 137402507 -6879982 + (TTA)n Simple_repeat Simple_repeat 1 35 0 432 348 0 0 chr12 137403908 137404046 -6878443 - MIR SINE MIR -119 143 6 2662 126 30 0 chr12 137404921 137405285 -6877204 - THE1C LTR MaLR 0 375 1 891 285 90 61 chr12 137405382 137405792 -6876697 - MLT1J2 LTR MaLR -2 448 27 1777 115 163 88 chr12 137406216 137406590 -6875899 - MER4A LTR ERV1 -2 662 261 235 103 26 26 chr12 137406591 137406630 -6875859 - MER4A LTR ERV1 -572 92 54 23 54 0 0 chr12 137408208 137408245 -6874244 + AT_rich Low_complexity Low_complexity 1 37 0 868 263 42 23 chr12 137409056 137409315 -6873174 + MLT1A1 LTR MaLR 10 273 -92 889 271 4 0 chr12 137409315 137409577 -6872912 - L1P LINE L1 -3225 2921 2659 410 148 0 57 chr12 137409578 137409666 -6872823 + MLT1A1 LTR MaLR 292 374 0 620 224 68 25 chr12 137409992 137410153 -6872336 + MLT1J2 LTR MaLR 2 169 -281 2139 131 0 0 chr12 137410296 137410594 -6871895 + AluSq SINE Alu 5 302 -11 182 351 92 22 chr12 137411913 137412098 -6870391 - L2 LINE L2 -237 3035 2838 262 303 0 11 chr12 137412272 137412361 -6870128 + (TG)n Simple_repeat Simple_repeat 1 88 0 451 313 62 0 chr12 137413584 137413728 -6868761 + MER91A DNA MER1_type 24 176 -20 9417 164 25 6 chr12 137413729 137414746 -6867743 + L1PB1 LINE L1 3369 4366 -1785 233 29 29 0 chr12 137414746 137414780 -6867709 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 9417 164 25 6 chr12 137414780 137416146 -6866343 + L1PB1 LINE L1 4366 5805 -346 270 56 0 0 chr12 137416146 137416182 -6866307 + (CA)n Simple_repeat Simple_repeat 2 37 0 9417 164 25 6 chr12 137416182 137416497 -6865992 + L1PB1 LINE L1 5805 6113 -38 24 0 0 0 chr12 137416497 137416521 -6865968 + AT_rich Low_complexity Low_complexity 1 24 0 415 275 43 43 chr12 137417843 137417894 -6864595 + MER91C DNA MER1_type 2 52 -88 2517 227 19 65 chr12 137417894 137418536 -6863953 + LTR9 LTR ERV1 1 612 0 415 275 43 43 chr12 137418536 137418622 -6863867 + MER91C DNA MER1_type 51 139 -1 2114 130 3 9 chr12 137419629 137419944 -6862545 + AluSq SINE Alu 1 313 0 30 45 0 0 chr12 137420127 137420171 -6862318 + AT_rich Low_complexity Low_complexity 1 44 0 445 257 58 23 chr12 137420173 137420344 -6862145 - MER104 DNA Tc2 -2 178 2 24 32 0 0 chr12 137420544 137420575 -6861914 + AT_rich Low_complexity Low_complexity 1 31 0 282 103 0 0 chr12 137420707 137420746 -6861743 - MLT2B1 LTR ERVL -1 413 375 180 0 0 0 chr12 137420746 137420766 -6861723 + (TG)n Simple_repeat Simple_repeat 2 21 0 1510 213 78 31 chr12 137420771 137421097 -6861392 - MLT2B1 LTR ERVL -116 404 56 2705 123 59 10 chr12 137421097 137421505 -6860984 - MSTA LTR MaLR 0 428 1 1510 213 78 31 chr12 137421505 137421563 -6860926 - MLT2B1 LTR ERVL -464 56 2 261 0 0 0 chr12 137422864 137422893 -6859596 + (TG)n Simple_repeat Simple_repeat 2 30 0 2211 132 39 36 chr12 137423307 137423670 -6858819 - THE1B LTR MaLR 0 364 1 1792 93 19 41 chr12 137423702 137423972 -6858517 + MER41A LTR ERV1 291 554 0 2062 152 0 0 chr12 137424624 137424921 -6857568 - AluSx SINE Alu -15 297 1 184 130 43 0 chr12 137425207 137425253 -6857236 + (TA)n Simple_repeat Simple_repeat 1 48 0 208 315 22 0 chr12 137425367 137425456 -6857033 - MIR SINE MIR 0 262 172 23 33 0 0 chr12 137425470 137425500 -6856989 + AT_rich Low_complexity Low_complexity 1 30 0 419 261 112 15 chr12 137425608 137425742 -6856747 - MIR SINE MIR -101 161 15 670 260 90 0 chr12 137428534 137428711 -6853778 - LTR16C LTR ERVL 0 491 299 25 31 0 0 chr12 137428949 137428981 -6853508 + AT_rich Low_complexity Low_complexity 1 32 0 1060 180 4 94 chr12 137429046 137429126 -6853363 - L1MB5 LINE L1 -66 6112 6026 2220 125 0 0 chr12 137429126 137429422 -6853067 + AluSx SINE Alu 1 296 -16 1060 180 4 94 chr12 137429422 137429633 -6852856 - L1MB5 LINE L1 -152 6026 5856 727 148 107 0 chr12 137429636 137429785 -6852704 + L1M4 LINE L1 5270 5434 -744 2193 71 7 48 chr12 137429834 137430144 -6852345 + AluY SINE Alu 1 297 -14 2548 145 38 58 chr12 137431531 137432027 -6850462 - LTR19A LTR ERV1 0 486 1 396 286 34 71 chr12 137432424 137432662 -6849827 + L2 LINE L2 2826 3054 -218 1828 159 10 10 chr12 137432694 137433002 -6849487 + L1MC1 LINE L1 6009 6316 -17 197 59 59 0 chr12 137433042 137433076 -6849413 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 469 320 115 42 chr12 137433201 137433698 -6848791 + MLT1H LTR MaLR 17 549 0 274 314 20 20 chr12 137433936 137434038 -6848451 - MIR3 SINE MIR -25 183 82 221 219 0 0 chr12 137434230 137434271 -6848218 + (TGG)n Simple_repeat Simple_repeat 1 41 0 221 188 21 0 chr12 137435013 137435061 -6847428 + GA-rich Low_complexity Low_complexity 2 50 0 2518 89 9 0 chr12 137435094 137435420 -6847069 - L1PB1 LINE L1 -2 6149 5821 2287 113 0 0 chr12 137435564 137435866 -6846623 + AluY SINE Alu 1 302 -9 2217 152 11 98 chr12 137436766 137437233 -6845256 - MSTB LTR MaLR 0 426 1 2064 138 0 0 chr12 137437887 137438183 -6844306 - AluSx SINE Alu -16 296 1 1790 179 3 0 chr12 137438579 137438880 -6843609 - AluJo SINE Alu -10 302 1 348 265 193 78 chr12 137439045 137439445 -6843044 + MLT1L LTR MaLR 10 455 -160 316 226 0 0 chr12 137439482 137439535 -6842954 + MLT1D LTR MaLR 3 55 -450 742 222 157 5 chr12 137440029 137440214 -6842275 - MER58A DNA MER1_type -11 213 1 260 257 0 50 chr12 137440250 137440351 -6842138 - L1 LINE L1 -1823 4323 4228 * 541 256 109 2 chr12 137440346 137440559 -6841930 + L1ME1 LINE L1 5845 6075 -91 336 174 70 0 chr12 137441277 137441363 -6841126 - Charlie5 DNA MER1_type -2475 137 46 1277 200 53 4 chr12 137442612 137442877 -6839612 + MER49 LTR ERV1 1 278 -645 1305 183 45 15 chr12 137442933 137443201 -6839288 + AluJo SINE Alu 35 310 -2 1256 200 45 42 chr12 137443206 137443425 -6839064 + MER4D LTR ERV1 568 790 -113 1850 120 43 27 chr12 137443425 137443726 -6838763 + AluSx SINE Alu 6 311 -1 1256 200 45 42 chr12 137443726 137443836 -6838653 + MER4D LTR ERV1 790 898 -5 981 258 49 79 chr12 137444927 137445481 -6837008 + L1ME3 LINE L1 5556 6092 -70 299 178 0 27 chr12 137445483 137445556 -6836933 + (TATG)n Simple_repeat Simple_repeat 4 74 0 241 215 0 65 chr12 137445559 137445652 -6836837 + L1MC4 LINE L1 6617 6703 -1339 254 186 0 51 chr12 137445653 137445712 -6836777 + MER4-int LTR ERV1 1112 1167 -5431 217 196 65 0 chr12 137445712 137445758 -6836731 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 249 191 44 0 chr12 137445758 137445826 -6836663 - L1MCa LINE L1 -4361 2065 1995 375 265 96 74 chr12 137445956 137446186 -6836303 - MIR SINE MIR -1 261 27 183 80 0 0 chr12 137447460 137447485 -6835004 + (CATA)n Simple_repeat Simple_repeat 3 27 0 4334 241 71 73 chr12 137448115 137448841 -6833648 + L1MC4a LINE L1 5870 6596 -1212 1129 248 35 0 chr12 137448841 137449071 -6833418 - MER8 DNA MER2_type -1 238 1 4334 241 71 73 chr12 137449071 137449829 -6832660 + L1MC4a LINE L1 6596 7352 -456 2322 94 3 0 chr12 137449829 137450127 -6832362 + AluSx SINE Alu 1 299 -13 4334 241 71 73 chr12 137450127 137450578 -6831911 + L1MC4a LINE L1 7352 7802 -6 321 217 287 9 chr12 137451847 137451962 -6830527 + MIR SINE MIR 83 229 -33 198 0 0 0 chr12 137452032 137452054 -6830435 + (ATG)n Simple_repeat Simple_repeat 2 23 0 1699 231 73 24 chr12 137452114 137452581 -6829908 + MLT1E2 LTR MaLR 137 626 0 584 317 45 16 chr12 137452634 137452877 -6829612 - MIR SINE MIR -8 254 5 2344 83 3 0 chr12 137453060 137453361 -6829128 - AluSp SINE Alu -11 302 1 2692 33 0 0 chr12 137453548 137453852 -6828637 + AluYb8 SINE Alu 2 305 -13 3553 166 39 33 chr12 137454310 137454998 -6827491 - L1PB4 LINE L1 -1 6155 5464 300 127 0 63 chr12 137454998 137455061 -6827428 + L1PB4 LINE L1 5412 5470 -830 2062 169 33 39 chr12 137455475 137456036 -6826453 - MLT2A2 LTR ERVL 0 554 1 3222 131 62 26 chr12 137456036 137456580 -6825909 - HERVL-A2 LTR ERVL 0 5654 5091 1625 224 28 54 chr12 137457054 137457633 -6824856 + MER82 DNA MER2_type 1 647 -6 325 230 128 61 chr12 137457635 137457783 -6824706 - LTR33 LTR ERVL -89 432 275 385 305 18 49 chr12 137457854 137458018 -6824471 - MIR SINE MIR -91 171 13 2036 147 133 48 chr12 137458121 137458542 -6823947 - LTR46 LTR ERV1 0 460 4 209 228 33 54 chr12 137458678 137458770 -6823719 - L2 LINE L2 -1 3312 3223 1833 161 3 30 chr12 137459654 137459958 -6822531 + AluJo SINE Alu 2 297 -15 264 313 107 18 chr12 137460068 137460180 -6822309 + MLT1I LTR MaLR 99 220 -189 189 305 17 17 chr12 137460683 137460742 -6821747 - MIR3 SINE MIR -13 195 137 192 400 126 6 chr12 137460889 137461064 -6821425 - L2 LINE L2 -168 3104 2909 226 165 130 61 chr12 137462333 137462448 -6820041 + L1ME4a LINE L1 5258 5380 -794 23 33 0 0 chr12 137462494 137462524 -6819965 + AT_rich Low_complexity Low_complexity 1 30 0 2707 129 0 0 chr12 137462587 137462951 -6819538 - THE1B LTR MaLR 0 364 1 480 262 137 76 chr12 137462951 137463177 -6819312 + L1ME4a LINE L1 5539 5750 -371 498 322 43 72 chr12 137463177 137463525 -6818964 + MER102b DNA MER1_type 4 341 0 480 262 137 76 chr12 137463525 137463814 -6818675 + L1ME4a LINE L1 5750 6089 -32 364 251 40 116 chr12 137465264 137465463 -6817026 + MER102a DNA MER1_type 132 315 -15 1343 173 20 12 chr12 137465472 137465726 -6816763 - AluJo SINE Alu -14 298 43 1370 206 119 15 chr12 137465871 137466265 -6816224 + Charlie1b DNA MER1_type 73 507 -16 1236 98 6 6 chr12 137466410 137466583 -6815906 - L1PA13 LINE L1 -7 6156 5984 294 206 0 0 chr12 137466619 137466682 -6815807 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 281 214 95 48 chr12 137466790 137466874 -6815615 - MIR3 SINE MIR -9 199 112 224 120 20 0 chr12 137467951 137468001 -6814488 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1648 156 41 129 chr12 137468205 137468677 -6813812 - L1M4 LINE L1 -493 5685 5173 2428 76 0 3 chr12 137468677 137468978 -6813511 + AluY SINE Alu 1 300 -11 198 0 0 0 chr12 137468978 137469000 -6813489 + (TA)n Simple_repeat Simple_repeat 2 23 0 1648 156 41 129 chr12 137469000 137469026 -6813463 - L1M4 LINE L1 -911 5267 5240 928 233 23 9 chr12 137469019 137469238 -6813251 + L1MB5 LINE L1 5921 6142 -32 * 1692 176 0 21 chr12 137469238 137469527 -6812962 + AluJb SINE Alu 1 283 -29 545 166 36 72 chr12 137470102 137470241 -6812248 + MER106B DNA MER1_type 926 1059 0 186 71 0 0 chr12 137470255 137470283 -6812206 + (CA)n Simple_repeat Simple_repeat 1 28 0 264 331 75 36 chr12 137470399 137470677 -6811812 + L1MC/D LINE L1 5372 5660 -2148 584 290 54 18 chr12 137470911 137471135 -6811354 - MIR SINE MIR -2 260 29 228 214 83 60 chr12 137471275 137471359 -6811130 - MIR SINE MIR -71 191 106 542 269 171 65 chr12 137471611 137472072 -6810417 - MLT1G LTR MaLR 0 590 46 226 222 19 0 chr12 137472289 137472343 -6810146 - L1MC/D LINE L1 -1875 5933 5879 872 295 14 70 chr12 137472450 137472809 -6809680 - MER102b DNA MER1_type -1 340 2 2243 56 0 0 chr12 137473663 137473930 -6808559 - AluY SINE Alu 0 311 45 318 314 80 22 chr12 137474331 137474478 -6808011 + MIR SINE MIR 3 156 -64 715 200 7 0 chr12 137474604 137474754 -6807735 - L1MA6 LINE L1 0 6300 6150 2156 92 11 0 chr12 137474938 137475250 -6807239 + AluSq SINE Alu 1 315 0 3119 161 27 22 chr12 137475928 137476481 -6806008 - MER41D LTR ERV1 0 557 2 1833 158 24 0 chr12 137477137 137477428 -6805061 - AluSx SINE Alu -14 298 1 1331 224 52 23 chr12 137478322 137478671 -6803818 - MLT1B LTR MaLR 0 390 32 2019 152 0 0 chr12 137478671 137478996 -6803493 + AluSx SINE Alu 1 312 0 2096 143 14 16 chr12 137479528 137479891 -6802598 + L1MA9 LINE L1 5949 6310 -2 4252 136 32 3 chr12 137480323 137480949 -6801540 + LTR9B LTR ERV1 1 644 0 294 249 127 48 chr12 137481472 137481637 -6800852 + MLT1K LTR MaLR 376 553 -35 6401 73 5 19 chr12 137482254 137483045 -6799444 - LTR17 LTR ERV1 0 780 1 1747 149 166 57 chr12 137483179 137483547 -6798942 - MER4A LTR ERV1 0 664 257 328 89 0 0 chr12 137483543 137483588 -6798901 - MER4A LTR ERV1 -566 98 54 * 1601 98 47 17 chr12 137483908 137484142 -6798347 + THE1B LTR MaLR 124 364 0 1999 127 0 56 chr12 137485077 137485401 -6797088 + AluSx SINE Alu 7 312 0 220 256 39 26 chr12 137485753 137485831 -6796658 + MIR SINE MIR 59 137 -125 2158 120 3 3 chr12 137485853 137486152 -6796337 + AluSc SINE Alu 1 299 -10 5083 57 0 3 chr12 137486846 137487439 -6795050 - LTR10C LTR ERV1 0 591 1 673 235 33 7 chr12 137491799 137491952 -6790537 - MIR SINE MIR -61 201 45 2003 158 0 0 chr12 137492210 137492513 -6789976 + AluJb SINE Alu 3 305 -7 1078 64 41 0 chr12 137492535 137492706 -6789783 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 385 277 108 62 chr12 137492730 137492925 -6789564 - L2 LINE L2 -6 3307 3104 224 316 52 37 chr12 137492955 137493091 -6789398 + L2 LINE L2 2909 3046 -226 405 340 74 5 chr12 137493125 137493328 -6789161 - L2 LINE L2 -416 2898 2682 712 201 8 5 chr12 137493350 137493730 -6788759 + (TAGA)n Simple_repeat Simple_repeat 1 381 0 615 62 31 0 chr12 137494375 137494472 -6788017 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 265 309 55 36 chr12 137495601 137495711 -6786778 - MIR3 SINE MIR -85 123 12 196 244 0 0 chr12 137496320 137496361 -6786128 + L2 LINE L2 3264 3304 -9 986 299 100 9 chr12 137496365 137496796 -6785693 - L2 LINE L2 -5 3308 2839 1452 178 6 65 chr12 137497267 137497588 -6784901 - AluJo SINE Alu -10 302 1 549 265 31 6 chr12 137497735 137497897 -6784592 - MIR SINE MIR -5 257 92 513 186 47 16 chr12 137498140 137498269 -6784220 + L1ME LINE L1 5553 5685 -485 315 295 13 54 chr12 137500406 137500555 -6781934 - MIR SINE MIR -64 198 56 245 271 131 9 chr12 137500528 137500635 -6781854 + L2 LINE L2 3192 3311 -2 * 1588 144 110 26 chr12 137500686 137501032 -6781457 - THE1C LTR MaLR 0 375 1 410 283 9 0 chr12 137501032 137501138 -6781351 - MER20 DNA MER1_type -9 210 104 24 53 0 0 chr12 137501600 137501638 -6780851 + AT_rich Low_complexity Low_complexity 1 38 0 366 299 36 108 chr12 137501921 137502172 -6780317 + MIR SINE MIR 28 260 -2 21 0 0 0 chr12 137504401 137504422 -6778067 + AT_rich Low_complexity Low_complexity 1 21 0 1518 77 56 0 chr12 137504547 137504780 -6777709 - L1P LINE L1 -1108 5038 4793 2519 67 3 3 chr12 137504780 137505107 -6777382 + L1PA7 LINE L1 5822 6148 -6 377 311 57 17 chr12 137505107 137505284 -6777205 + L1MEd LINE L1 913 1096 -5023 302 299 35 14 chr12 137505309 137505453 -6777036 - MLT1G LTR MaLR -25 565 419 275 368 16 0 chr12 137505659 137505784 -6776705 - MLT1H1 LTR MaLR -418 137 11 409 290 43 25 chr12 137505802 137505877 -6776612 + L1MCa LINE L1 54 54 -5991 432 0 0 0 chr12 137505877 137505925 -6776564 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 409 290 43 25 chr12 137505925 137506067 -6776422 + L1MCa LINE L1 54 192 -5853 5017 132 42 19 chr12 137506085 137507520 -6774969 + L1PA16 LINE L1 4700 6157 -9 1412 243 135 23 chr12 137507535 137507873 -6774616 + L1MC3 LINE L1 5284 5259 -1032 1730 183 25 3 chr12 137507873 137508158 -6774331 + AluSx SINE Alu 1 291 -21 1412 243 135 23 chr12 137508158 137508401 -6774088 + L1MC3 LINE L1 5258 5472 -819 1272 183 16 61 chr12 137508398 137508575 -6773914 + L1MC3 LINE L1 6139 6170 -174 * 2438 121 27 0 chr12 137508575 137508940 -6773549 - THE1C LTR MaLR 0 375 1 1272 183 16 61 chr12 137508940 137509108 -6773381 + L1MC3 LINE L1 6170 6344 0 251 270 63 78 chr12 137509137 137509385 -6773104 + L1MCa LINE L1 1612 1862 -4702 1606 171 10 27 chr12 137509385 137509677 -6772812 + AluJb SINE Alu 1 287 -25 288 0 0 0 chr12 137509679 137509711 -6772778 + (CA)n Simple_repeat Simple_repeat 2 33 0 251 270 63 78 chr12 137509711 137509752 -6772737 + L1MCa LINE L1 1863 1903 -4661 897 181 10 30 chr12 137509752 137509951 -6772538 + L1PB4 LINE L1 5955 6149 -7 251 270 63 78 chr12 137509951 137510103 -6772386 + L1MCa LINE L1 1903 2012 -4552 2267 146 92 3 chr12 137510120 137510511 -6771978 - MSTB LTR MaLR 0 426 1 240 276 111 52 chr12 137511234 137511684 -6770805 + L1MCa LINE L1 2903 3388 -3176 2172 125 0 0 chr12 137511684 137511980 -6770509 + AluSx SINE Alu 1 296 -16 240 276 111 52 chr12 137511980 137512043 -6770446 + L1MCa LINE L1 3388 3446 -3118 1797 151 14 14 chr12 137512610 137512901 -6769588 - AluJo SINE Alu -21 291 1 2434 53 0 3 chr12 137513976 137514278 -6768211 - AluY SINE Alu -10 301 1 892 121 29 0 chr12 137515407 137515580 -6766909 + CT-rich Low_complexity Low_complexity 1 178 0 228 35 0 0 chr12 137515580 137515609 -6766880 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 609 268 84 73 chr12 137515615 137515996 -6766493 - L2 LINE L2 -30 3283 2899 1697 130 17 83 chr12 137516826 137517164 -6765325 + AluSx SINE Alu 4 321 0 2061 90 19 0 chr12 137518510 137518777 -6763712 + AluSx SINE Alu 37 308 -4 1273 97 0 6 chr12 137518779 137518954 -6763535 + AluSg/x SINE Alu 130 303 -9 198 0 0 0 chr12 137518954 137518976 -6763513 + (TA)n Simple_repeat Simple_repeat 2 23 0 1398 191 0 8 chr12 137519100 137519341 -6763148 + MER8 DNA MER2_type 1 239 0 625 266 111 73 chr12 137519637 137520089 -6762400 - MLT1J LTR MaLR -40 471 3 199 324 63 27 chr12 137520427 137520538 -6761951 + MIR SINE MIR 146 260 -2 1831 174 23 12 chr12 137521195 137521539 -6760950 - MER7A DNA MER2_type 0 346 1 1611 237 45 7 chr12 137522572 137523019 -6759470 + L1MD2 LINE L1 5894 6357 -2 1799 138 148 97 chr12 137523077 137523636 -6758853 - LTR4 LTR ERV1 0 588 1 2069 113 0 52 chr12 137523774 137524103 -6758386 + AluSx SINE Alu 1 312 0 1702 199 0 3 chr12 137524147 137524443 -6758046 - AluJb SINE Alu -17 295 1 243 0 0 0 chr12 137524898 137524925 -6757564 + (CA)n Simple_repeat Simple_repeat 2 28 0 333 78 0 0 chr12 137524927 137524978 -6757511 - MADE1 DNA Mariner 0 80 30 222 37 0 0 chr12 137525013 137525040 -6757449 + (TA)n Simple_repeat Simple_repeat 2 28 0 1904 198 34 9 chr12 137525040 137525485 -6757004 - MER65C LTR ERV1 -2 459 4 2120 126 0 10 chr12 137525594 137525903 -6756586 - AluSg1 SINE Alu -3 306 1 770 211 103 17 chr12 137525972 137526204 -6756285 - MER82 DNA MER2_type -401 252 1 1043 190 9 30 chr12 137527411 137527643 -6754846 - L1MC2 LINE L1 -11 6333 6107 224 0 0 61 chr12 137527729 137527762 -6754727 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 441 116 47 0 chr12 137527796 137527882 -6754607 + AluJ/FRAM SINE Alu 221 310 -2 1111 208 40 4 chr12 137528019 137528293 -6754196 - L1MC2 LINE L1 -240 6104 5821 228 245 56 63 chr12 137528469 137528612 -6753877 - MER112 DNA MER1_type -87 173 32 490 276 97 28 chr12 137528847 137529064 -6753425 - MIR SINE MIR -11 251 20 513 331 59 18 chr12 137529413 137529685 -6752804 - L2 LINE L2 -3 3310 3028 2142 121 7 0 chr12 137529700 137530007 -6752482 + AluSx SINE Alu 1 309 -3 310 242 74 11 chr12 137531578 137531673 -6750816 + MLT1K LTR MaLR 40 140 -448 2231 102 3 7 chr12 137531705 137532008 -6750481 - AluSp SINE Alu -9 304 3 218 426 17 0 chr12 137532299 137532414 -6750075 + L2 LINE L2 3188 3304 -9 1528 165 0 112 chr12 137532435 137532775 -6749714 + AluJb SINE Alu 1 302 0 302 314 29 0 chr12 137532810 137532912 -6749577 + MLT1K LTR MaLR 422 526 -62 2376 147 29 7 chr12 137533163 137533577 -6748912 - L1PA16 LINE L1 0 6166 5744 1037 215 98 30 chr12 137533578 137533946 -6748543 + L1 LINE L1 3977 4369 -1777 2548 48 0 16 chr12 137534354 137534670 -6747819 + AluY SINE Alu 1 311 0 417 348 32 5 chr12 137536516 137536703 -6745786 + MIR SINE MIR 71 262 0 354 296 58 45 chr12 137537590 137537774 -6744715 - Charlie8 DNA MER1_type -51 279 90 1801 110 0 0 chr12 137537774 137538011 -6744478 - AluSx SINE Alu -32 280 44 354 296 58 45 chr12 137538011 137538049 -6744440 - Charlie8 DNA MER1_type -240 90 54 493 253 14 7 chr12 137538065 137538211 -6744278 - L1M4 LINE L1 -1284 5673 5527 342 199 20 20 chr12 137538299 137538445 -6744044 + (TAGA)n Simple_repeat Simple_repeat 4 149 0 3499 245 51 34 chr12 137538633 137539379 -6743110 - L1M4 LINE L1 -4683 2276 1544 946 85 0 21 chr12 137539379 137539520 -6742969 - L1PA8 LINE L1 -2 6170 6033 3499 245 51 34 chr12 137539520 137540382 -6742107 - L1M4 LINE L1 -5415 1544 656 1486 296 121 6 chr12 137540385 137540896 -6741593 - L1M4 LINE L1 -6276 583 14 2151 137 0 0 chr12 137541009 137541308 -6741181 + AluSx SINE Alu 1 299 -13 2018 137 0 19 chr12 137541730 137542044 -6740445 + AluSx SINE Alu 5 312 0 537 225 67 77 chr12 137542072 137542477 -6740012 + L1M4 LINE L1 4310 4710 -1436 700 85 0 0 chr12 137542660 137542754 -6739735 - MER85 DNA T2_type -2 137 44 506 84 0 0 chr12 137544675 137544746 -6737743 - L1PA13 LINE L1 -96 6067 5997 284 235 42 42 chr12 137544763 137544882 -6737607 + MER63D DNA MER1_type 324 442 -619 365 242 84 21 chr12 137544963 137545058 -6737431 + MER63D DNA MER1_type 958 1058 -2 420 289 39 0 chr12 137545488 137545592 -6736897 + MIR SINE MIR 34 141 -121 874 264 131 36 chr12 137545682 137546156 -6736333 - LTR33 LTR ERVL 0 521 3 311 239 118 29 chr12 137546404 137546509 -6735980 - MIR SINE MIR -59 203 87 223 303 50 10 chr12 137546657 137546756 -6735733 - L2 LINE L2 -42 3271 3169 224 313 100 25 chr12 137546851 137546931 -6735558 - L2 LINE L2 -269 3044 2959 2064 100 35 0 chr12 137546962 137547129 -6735360 - AluY SINE Alu -12 299 116 423 0 0 0 chr12 137547129 137547176 -6735313 + (TG)n Simple_repeat Simple_repeat 2 48 0 2064 100 35 0 chr12 137547176 137547297 -6735192 - AluY SINE Alu -195 116 1 308 344 96 13 chr12 137547322 137547479 -6735010 + MIR SINE MIR 81 250 -12 231 88 0 0 chr12 137548414 137548448 -6734041 + (CA)n Simple_repeat Simple_repeat 2 35 0 317 222 0 0 chr12 137549179 137549260 -6733229 - L1M4 LINE L1 -3639 2507 2427 592 278 66 3 chr12 137549276 137549564 -6732925 - L1M4 LINE L1 -3624 2522 2217 1183 150 115 28 chr12 137549748 137549884 -6732605 - L1MA9 LINE L1 0 6312 6189 333 0 0 0 chr12 137549884 137549921 -6732568 + (TG)n Simple_repeat Simple_repeat 2 38 0 1183 150 115 28 chr12 137549921 137550071 -6732418 - L1MA9 LINE L1 -123 6189 6001 226 256 39 0 chr12 137550287 137550365 -6732124 - MLT1J1 LTR MaLR -11 435 355 249 239 154 31 chr12 137551199 137551329 -6731160 + MIR SINE MIR 116 261 -1 186 222 0 0 chr12 137551798 137551852 -6730637 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 1460 152 11 33 chr12 137551970 137552240 -6730249 - AluJo SINE Alu -48 264 1 193 260 170 40 chr12 137553183 137553283 -6729206 + MIR3 SINE MIR 83 195 -13 82 0 0 0 chr12 137553283 137553365 -6729124 + AT_rich Low_complexity Low_complexity 1 82 0 519 86 68 6 chr12 137553365 137553527 -6728962 + (TA)n Simple_repeat Simple_repeat 1 172 0 278 106 59 35 chr12 137553565 137553735 -6728754 + (TA)n Simple_repeat Simple_repeat 1 174 0 276 80 40 0 chr12 137553827 137553877 -6728612 - L1MA9 LINE L1 0 6312 6261 1067 155 0 0 chr12 137553878 137554033 -6728456 + AluSg/x SINE Alu 133 287 -25 216 86 0 0 chr12 137554039 137554074 -6728415 + (TA)n Simple_repeat Simple_repeat 1 35 0 1669 183 50 99 chr12 137554118 137554203 -6728286 - L1MA9 LINE L1 -57 6255 6167 243 0 0 0 chr12 137554203 137554230 -6728259 + (TG)n Simple_repeat Simple_repeat 2 28 0 1669 183 50 99 chr12 137554230 137554648 -6727841 - L1MA9 LINE L1 -145 6167 5777 221 282 26 13 chr12 137554649 137554727 -6727762 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 2588 142 135 36 chr12 137554727 137555106 -6727383 - MER7C DNA MER2_type -2426 602 151 2172 96 14 3 chr12 137555106 137555399 -6727090 - AluSx SINE Alu -16 296 1 2588 142 135 36 chr12 137555399 137555567 -6726922 - MER7C DNA MER2_type -2877 151 1 206 105 26 0 chr12 137555571 137555609 -6726880 + (TG)n Simple_repeat Simple_repeat 2 40 0 2201 191 28 30 chr12 137555640 137556327 -6726162 - L1MA9 LINE L1 -519 5793 5105 315 247 103 81 chr12 137556376 137556599 -6725890 - L1M4 LINE L1 -2846 3300 3073 2086 232 19 6 chr12 137556694 137557212 -6725277 - L1MA9 LINE L1 -1016 5130 4606 25 0 0 0 chr12 137558124 137558149 -6724340 + AT_rich Low_complexity Low_complexity 1 25 0 264 145 91 0 chr12 137558680 137558746 -6723743 - L1MA9 LINE L1 -1523 4623 4553 230 218 0 36 chr12 137558825 137558880 -6723609 - MLT1K LTR MaLR -75 513 461 21 0 0 0 chr12 137559013 137559034 -6723455 + AT_rich Low_complexity Low_complexity 1 21 0 243 236 90 34 chr12 137559439 137559528 -6722961 + MLT1I LTR MaLR 315 408 -1 22 0 0 0 chr12 137560078 137560100 -6722389 + AT_rich Low_complexity Low_complexity 1 22 0 1471 213 25 49 chr12 137561295 137561661 -6720828 + MLT1A1 LTR MaLR 1 357 -8 195 267 0 0 chr12 137562167 137562212 -6720277 + L2 LINE L2 3265 3309 -4 22 0 0 0 chr12 137562301 137562323 -6720166 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr12 137562379 137562408 -6720081 + AT_rich Low_complexity Low_complexity 1 29 0 2008 143 3 10 chr12 137562408 137562715 -6719774 + AluSx SINE Alu 1 305 -7 308 281 22 29 chr12 137563187 137563326 -6719163 + L1MEc LINE L1 44 181 -6215 434 295 92 58 chr12 137563399 137563724 -6718765 + L1MEc LINE L1 281 616 -5780 2033 107 14 154 chr12 137563724 137564129 -6718360 - Tigger4(Zombi) DNA MER2_type 0 2731 2406 1252 209 55 22 chr12 137564129 137564402 -6718087 - AluJo SINE Alu -30 282 1 2033 107 14 154 chr12 137564402 137564490 -6717999 - Tigger4(Zombi) DNA MER2_type -325 2406 2307 529 129 24 0 chr12 137564490 137564575 -6717914 - Tigger4(Zombi) DNA MER2_type -2644 87 1 817 261 16 12 chr12 137564615 137564872 -6717617 + L1MEc LINE L1 656 913 -5483 1594 204 3 44 chr12 137564876 137565215 -6717274 - MLT1A1 LTR MaLR -3 362 38 207 279 93 47 chr12 137565222 137565308 -6717181 - L2 LINE L2 -46 3226 3137 1658 187 0 3 chr12 137565788 137566071 -6716418 - AluJb SINE Alu -30 282 1 1012 143 11 11 chr12 137566855 137567037 -6715452 + L1MA3 LINE L1 6124 6305 0 236 378 10 19 chr12 137567063 137567272 -6715217 - L2 LINE L2 -190 3082 2876 1661 180 88 70 chr12 137567274 137567736 -6714753 - MER66A LTR ERV1 0 478 97 603 272 31 55 chr12 137568112 137568366 -6714123 - MIR SINE MIR 0 262 15 250 295 72 80 chr12 137568516 137568753 -6713736 - MER102a DNA MER1_type -5 325 91 405 324 120 13 chr12 137570161 137570396 -6712093 - MER113 DNA MER1_type? -1 520 245 3714 95 28 0 chr12 137570396 137570933 -6711556 + L1PA13 LINE L1 5612 6163 0 405 324 120 13 chr12 137570933 137570993 -6711496 - MER113 DNA MER1_type? -276 245 193 356 254 9 64 chr12 137570993 137571077 -6711412 - MLT2E LTR ERVL 0 628 550 827 231 79 0 chr12 137571077 137571280 -6711209 + MER20 DNA MER1_type 1 219 0 356 254 9 64 chr12 137571280 137571305 -6711184 - MLT2E LTR ERVL -78 550 525 * 772 266 174 25 chr12 137571294 137571576 -6710913 - MLT2E LTR ERVL -251 377 54 329 313 82 47 chr12 137571937 137572170 -6710319 + MLT1J LTR MaLR 95 335 -176 639 229 41 37 chr12 137572769 137572987 -6709502 + MER20 DNA MER1_type 1 219 0 1069 235 112 0 chr12 137573743 137574020 -6708469 + REP3 LTR ERV 1 308 -254 3686 47 0 0 chr12 137574123 137574573 -6707916 + L1PA6 LINE L1 5702 6151 -3 301 239 0 15 chr12 137574583 137574650 -6707839 + REP3 LTR ERV 482 547 -15 194 314 142 17 chr12 137575046 137575167 -6707322 + MIR SINE MIR 40 174 -88 1932 132 0 14 chr12 137575523 137575819 -6706670 + AluSx SINE Alu 16 307 -5 2305 251 33 19 chr12 137575819 137576599 -6705890 + L1M4 LINE L1 4321 5111 -1035 473 160 40 10 chr12 137576988 137577088 -6705401 + L1MB7 LINE L1 6069 6171 -13 197 325 53 9 chr12 137577116 137577230 -6705259 + MIR SINE MIR 138 256 -6 1025 200 15 108 chr12 137577895 137578068 -6704421 + L1MB8 LINE L1 4477 4596 -1550 1917 160 75 120 chr12 137578068 137578453 -6704036 - MER7C DNA MER2_type -2426 602 256 188 67 33 0 chr12 137578453 137578483 -6704006 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 1917 160 75 120 chr12 137578483 137578728 -6703761 - MER7C DNA MER2_type -2772 256 1 1025 200 15 108 chr12 137578728 137578944 -6703545 + L1MB8 LINE L1 4596 4830 -1316 * 2408 202 52 57 chr12 137578937 137579445 -6703044 + L1MB8 LINE L1 5482 5988 -190 2094 135 48 25 chr12 137579445 137579801 -6702688 + THE1B LTR MaLR 1 364 0 2408 202 52 57 chr12 137579801 137579980 -6702509 + L1MB8 LINE L1 5988 6166 -12 2172 87 6 26 chr12 137581285 137581597 -6700892 - AluSp SINE Alu -7 306 1 224 98 0 24 chr12 137582224 137582265 -6700224 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 860 264 80 20 chr12 137582272 137582522 -6699967 - MLT2B3 LTR ERVL -40 514 250 547 264 155 0 chr12 137583644 137583799 -6698690 - MIR SINE MIR -77 185 7 1257 143 114 0 chr12 137584262 137584472 -6698017 - AluSx SINE Alu -21 291 58 2065 136 3 0 chr12 137584473 137584774 -6697715 + AluSx SINE Alu 9 310 -2 306 361 42 14 chr12 137585073 137585286 -6697203 - Charlie8 DNA MER1_type -2198 219 1 420 136 0 0 chr12 137585478 137585537 -6696952 - Tigger5 DNA MER2_type 0 2323 2265 3409 161 8 65 chr12 137586863 137587571 -6694918 - LTR8 LTR ERV1 -23 668 1 1542 108 128 0 chr12 137588171 137588429 -6694060 - MER41B LTR ERV1 -344 291 1 1276 176 0 21 chr12 137588438 137588676 -6693813 + MER41B LTR ERV1 273 505 -130 685 136 0 0 chr12 137588676 137588786 -6693703 - AluY SINE Alu -1 310 201 3911 191 56 14 chr12 137588786 137589612 -6692877 + MER89-int LTR ERV1 5341 6200 -601 1933 130 0 42 chr12 137589620 137589753 -6692736 + AluSx SINE Alu 5 142 -170 2259 98 3 7 chr12 137589753 137590048 -6692441 + AluSc SINE Alu 1 294 -15 1933 130 0 42 chr12 137590048 137590222 -6692267 + AluSx SINE Alu 142 299 -13 275 210 48 0 chr12 137590241 137590303 -6692186 + MER89-int LTR ERV1 6189 6253 -548 242 298 88 0 chr12 137591400 137591514 -6690975 + MIR SINE MIR 16 139 -123 187 292 77 54 chr12 137591749 137591879 -6690610 - MIR SINE MIR -129 133 1 300 253 0 36 chr12 137592078 137592161 -6690328 - L1MC5 LINE L1 -44 7917 7838 482 319 121 44 chr12 137593207 137593522 -6688967 + L2 LINE L2 1548 1837 -1477 1977 132 31 0 chr12 137593522 137593810 -6688679 + AluSx SINE Alu 1 297 -15 482 319 121 44 chr12 137593810 137594065 -6688424 + L2 LINE L2 1837 2162 -1152 209 255 20 0 chr12 137594100 137594151 -6688338 + MER5A DNA MER1_type 40 91 -98 882 352 76 37 chr12 137594222 137595163 -6687326 + L2 LINE L2 2178 3229 -43 230 278 40 24 chr12 137595750 137595876 -6686613 + L1M4 LINE L1 3877 4004 -2142 * 288 265 174 0 chr12 137595874 137596006 -6686483 + HAL1 LINE L1 1310 1464 -1043 1198 278 93 30 chr12 137596446 137597083 -6685406 + HAL1 LINE L1 1482 2158 -349 1143 233 19 0 chr12 137597228 137597486 -6685003 + MER89 LTR ERV1 273 535 -24 417 162 0 0 chr12 137597488 137597556 -6684933 + MER89 LTR ERV1 492 559 0 489 260 135 40 chr12 137597556 137597883 -6684606 + HAL1 LINE L1 2150 2507 0 343 56 37 0 chr12 137598201 137598255 -6684234 + (GAAAA)n Simple_repeat Simple_repeat 5 60 0 422 108 14 0 chr12 137598357 137598431 -6684058 + (CCCTAA)n Simple_repeat Simple_repeat 4 78 0 541 288 99 0 chr12 137598444 137598635 -6683854 + MIR SINE MIR 52 261 -1 416 273 56 102 chr12 137598993 137599436 -6683053 - Charlie8 DNA MER1_type -1985 432 10 2151 109 0 0 chr12 137599583 137599868 -6682621 - THE1B LTR MaLR 0 364 80 4700 145 33 85 chr12 137599868 137601457 -6681032 + pTR5 LTR ERV1 747 2438 0 575 138 0 0 chr12 137601460 137601547 -6680942 - THE1B LTR MaLR -288 87 1 26 0 0 0 chr12 137601785 137601811 -6680678 + AT_rich Low_complexity Low_complexity 1 26 0 400 221 244 0 chr12 137603140 137603271 -6679218 + MER106B DNA MER1_type 897 1059 0 21 0 0 0 chr12 137605466 137605487 -6677002 + AT_rich Low_complexity Low_complexity 1 21 0 180 325 50 50 chr12 137605995 137606075 -6676414 + MIR SINE MIR 20 99 -109 327 306 61 20 chr12 137606447 137606594 -6675895 - L1MEd LINE L1 -5935 184 32 1549 182 34 20 chr12 137606613 137606910 -6675579 - AluJo SINE Alu 0 312 12 1276 282 98 60 chr12 137607305 137607388 -6675101 + MLT1G1 LTR MaLR 3 81 -514 2047 152 7 0 chr12 137607388 137607698 -6674791 - AluSx SINE Alu 0 312 1 1276 282 98 60 chr12 137607698 137608185 -6674304 + MLT1G1 LTR MaLR 81 595 0 1999 153 3 0 chr12 137608543 137608843 -6673646 - AluSx SINE Alu -11 301 1 245 250 176 0 chr12 137609434 137609502 -6672987 + L2 LINE L2 3191 3270 -2 519 267 23 41 chr12 137609526 137609698 -6672791 - MIR SINE MIR -72 190 22 252 0 0 0 chr12 137610767 137610795 -6671694 + (A)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr12 137611736 137611761 -6670728 + AT_rich Low_complexity Low_complexity 1 25 0 675 162 0 27 chr12 137612147 137612258 -6670231 + FLAM_C SINE Alu 27 134 -9 264 160 0 0 chr12 137612796 137612846 -6669643 - L1MA9 LINE L1 -34 6278 6229 920 245 18 86 chr12 137612909 137613293 -6669196 + L1MA9 LINE L1 5816 6173 -139 1778 159 83 14 chr12 137613307 137613658 -6668831 - THE1C LTR MaLR 0 375 1 713 134 8 24 chr12 137614590 137614717 -6667772 - L1M LINE L1 -911 5380 5256 * 2031 166 33 3 chr12 137614714 137615081 -6667408 - L1 LINE L1 -1150 4996 4619 325 308 111 74 chr12 137615738 137616087 -6666402 + L2 LINE L2 2702 3075 -238 262 293 12 24 chr12 137617759 137617841 -6664648 - L2 LINE L2 -17 3255 3175 1775 155 0 20 chr12 137618675 137618972 -6663517 - AluJb SINE Alu -21 291 1 245 306 46 19 chr12 137619177 137619285 -6663204 + MIR SINE MIR 47 157 -105 594 259 86 61 chr12 137619346 137619659 -6662830 + MLT1K LTR MaLR 8 328 -260 287 264 46 0 chr12 137619805 137619892 -6662597 - MER69 DNA AcHobo 0 2526 2436 321 26 0 0 chr12 137619944 137619982 -6662507 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr12 137620001 137620024 -6662465 + AT_rich Low_complexity Low_complexity 1 23 0 2194 174 13 3 chr12 137620026 137620416 -6662073 + L1MB3 LINE L1 5787 6180 -3 1258 185 137 0 chr12 137620547 137620796 -6661693 - AluJb SINE Alu -27 285 3 472 281 75 41 chr12 137620844 137621302 -6661187 + L1MEd LINE L1 1058 1582 -4728 384 347 29 53 chr12 137621306 137621684 -6660805 + L2 LINE L2 2903 3271 -1 320 340 49 12 chr12 137622730 137622892 -6659597 + MIR SINE MIR 21 188 -74 263 246 159 16 chr12 137624104 137624230 -6658259 + MER117 DNA MER1_type 1 144 -53 265 200 17 0 chr12 137624609 137624669 -6657820 + Charlie8 DNA MER1_type 128 188 -2229 324 320 27 60 chr12 137624683 137624773 -6657716 - L2 LINE L2 -248 3065 2980 785 265 71 9 chr12 137624773 137624984 -6657505 - MER58A DNA MER1_type 0 224 1 324 320 27 60 chr12 137624984 137625043 -6657446 - L2 LINE L2 -333 2980 2921 641 264 94 12 chr12 137625728 137625982 -6656507 - MER113 DNA MER1_type? -63 458 184 499 310 53 11 chr12 137625981 137626168 -6656321 + LTR33 LTR ERVL 18 212 -309 * 1597 195 7 7 chr12 137626456 137626748 -6655741 - AluJb SINE Alu -20 292 1 210 308 19 84 chr12 137626890 137626997 -6655492 - MIR SINE MIR -82 126 27 566 196 119 42 chr12 137627590 137627758 -6654731 + Charlie8 DNA MER1_type 64 244 -2173 1334 204 11 4 chr12 137628347 137628659 -6653830 - AluSx SINE Alu 0 316 3 453 187 65 122 chr12 137628684 137628770 -6653719 + MER2 DNA MER2_type 2 91 -254 1819 145 10 3 chr12 137628770 137629060 -6653429 + AluSx SINE Alu 1 292 -20 558 30 0 0 chr12 137629060 137629127 -6653362 + L1PA4 LINE L1 6086 6152 -3 453 187 65 122 chr12 137629127 137629178 -6653311 + MER2 DNA MER2_type 89 132 -213 1182 171 7 102 chr12 137629178 137629482 -6653007 - AluJo SINE Alu -14 298 24 2350 93 0 3 chr12 137629535 137629836 -6652653 - AluSc SINE Alu -9 300 1 2340 102 0 0 chr12 137631103 137631406 -6651083 + AluSx SINE Alu 1 303 -9 533 294 147 5 chr12 137631692 137631882 -6650607 + MIR SINE MIR 17 241 -21 2439 87 0 3 chr12 137631882 137632193 -6650296 + AluY SINE Alu 1 310 -1 533 294 147 5 chr12 137632193 137632213 -6650276 + MIR SINE MIR 241 257 -5 288 254 97 18 chr12 137632276 137632390 -6650099 + MIR SINE MIR 110 232 -30 * 593 330 75 4 chr12 137632383 137632622 -6649867 + MIR SINE MIR 7 262 0 196 326 157 7 chr12 137633063 137633210 -6649279 + MIR SINE MIR 50 218 -44 2344 109 0 3 chr12 137633353 137633665 -6648824 + AluSx SINE Alu 1 311 -1 414 313 85 15 chr12 137633728 137633929 -6648560 - MIR SINE MIR -11 251 37 336 222 37 37 chr12 137634694 137634802 -6647687 - MLT1J2 LTR MaLR -319 131 24 1480 22 174 0 chr12 137636350 137636534 -6645955 - L1PA5 LINE L1 -7 6147 5932 21 0 0 0 chr12 137637639 137637660 -6644829 + AT_rich Low_complexity Low_complexity 1 21 0 299 299 37 131 chr12 137638386 137639086 -6643403 + L2 LINE L2 2173 2806 -508 181 191 149 0 chr12 137639182 137639229 -6643260 - MER5B DNA MER1_type -123 55 2 1877 191 45 11 chr12 137639231 137639607 -6642882 - L1MD1 LINE L1 -255 5987 5599 504 68 0 0 chr12 137641460 137641533 -6640956 + (GA)n Simple_repeat Simple_repeat 1 73 0 1737 123 0 4 chr12 137642283 137642519 -6639970 + AluSx SINE Alu 1 235 -77 969 209 71 21 chr12 137642519 137642758 -6639731 + L1MD1 LINE L1 5737 5987 -255 427 111 0 111 chr12 137642917 137642989 -6639500 + AluSx SINE Alu 228 291 -21 26 50 0 0 chr12 137644180 137644220 -6638269 + AT_rich Low_complexity Low_complexity 1 40 0 230 273 0 0 chr12 137644830 137644896 -6637593 - MLT1I LTR MaLR 0 409 344 321 302 17 93 chr12 137645433 137645482 -6637007 + MER5B DNA MER1_type 1 52 -126 922 89 17 17 chr12 137645482 137645662 -6636827 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 321 302 17 93 chr12 137645662 137645784 -6636705 + MER5B DNA MER1_type 52 159 -19 549 138 9 52 chr12 137645785 137645901 -6636588 - MER69 DNA AcHobo 0 2526 2416 1104 223 107 86 chr12 137645911 137646387 -6636102 - LTR10B LTR ERV1 -3 544 17 6092 237 31 11 chr12 137646411 137648031 -6634458 - LTR10B-int LTR ERV1 0 7783 4988 1678 233 134 11 chr12 137648110 137648556 -6633933 - HERVI LTR ERV1 -3737 3159 2659 385 196 11 76 chr12 137648577 137648669 -6633820 - HERVI LTR ERV1 -2369 5416 5331 1416 248 127 15 chr12 137648762 137649289 -6633200 - HERVI LTR ERV1 -3147 4638 1219 2692 202 37 78 chr12 137649903 137651002 -6631487 - HERVI LTR ERV1 -6786 999 1 931 249 130 94 chr12 137651021 137651491 -6630998 - LTR10B LTR ERV1 -3 544 16 775 206 61 36 chr12 137651509 137651786 -6630703 - MER69 DNA AcHobo -95 2431 2148 859 275 25 12 chr12 137651836 137652076 -6630413 - MER69 DNA AcHobo -483 743 501 1291 245 66 6 chr12 137652109 137652444 -6630045 - MER69 DNA AcHobo -2170 356 2 498 303 15 0 chr12 137652753 137652885 -6629604 + MIR SINE MIR 24 157 -105 2034 64 3 57 chr12 137652895 137653177 -6629312 - MER4E LTR ERV1 0 766 500 * 2352 70 10 0 chr12 137653173 137653475 -6629014 - MER4E LTR ERV1 -474 305 1 289 289 0 0 chr12 137653477 137653567 -6628922 + MIR SINE MIR 163 252 -10 1115 255 109 32 chr12 137654318 137654750 -6627739 - L1ME LINE L1 -448 6513 6049 637 226 77 0 chr12 137654895 137655063 -6627426 - L1ME LINE L1 -1022 5919 5739 3583 143 54 14 chr12 137655082 137655725 -6626764 - Tigger3b DNA MER2_type -2 1230 562 841 102 8 24 chr12 137655725 137655852 -6626637 - AluJo SINE Alu -178 134 10 3210 160 27 7 chr12 137655861 137656422 -6626067 - Tigger3b DNA MER2_type -659 572 1 3561 271 56 28 chr12 137656433 137658054 -6624435 - L1ME LINE L1 -1219 5722 4057 914 272 86 85 chr12 137658128 137658607 -6623882 - L1ME LINE L1 -5761 662 180 795 250 35 5 chr12 137658607 137658807 -6623682 - MER63A DNA MER1_type -4 206 1 914 272 86 85 chr12 137658807 137658952 -6623537 - L1ME LINE L1 -6243 180 37 21 0 0 0 chr12 137659075 137659096 -6623393 + AT_rich Low_complexity Low_complexity 1 21 0 205 186 0 0 chr12 137659738 137659781 -6622708 + A-rich Low_complexity Low_complexity 1 43 0 2998 190 34 25 chr12 137659784 137660194 -6622295 + L1MB2 LINE L1 5479 5899 -272 2249 108 0 3 chr12 137660194 137660489 -6622000 + AluSg SINE Alu 1 294 -16 2998 190 34 25 chr12 137660489 137660726 -6621763 + L1MB2 LINE L1 5899 6132 -39 1705 194 12 3 chr12 137660726 137661047 -6621442 + L1MA6 LINE L1 5973 6300 0 1958 244 49 45 chr12 137661393 137662000 -6620489 - MLT1E2 LTR MaLR 0 626 17 431 310 79 49 chr12 137662056 137662385 -6620104 - L1ME4a LINE L1 -166 5955 5617 1546 123 123 0 chr12 137662594 137662847 -6619642 - AluSg SINE Alu -26 284 1 345 221 46 53 chr12 137663157 137663288 -6619201 - MIR SINE MIR -11 251 122 416 282 80 39 chr12 137664752 137665188 -6617301 + LTR33 LTR ERVL 23 505 -16 25 0 0 0 chr12 137665490 137665515 -6616974 + AT_rich Low_complexity Low_complexity 1 25 0 1948 137 7 10 chr12 137665803 137666095 -6616394 - AluSg SINE Alu -19 291 1 403 325 80 14 chr12 137666301 137666587 -6615902 - L1ME LINE L1 -430 5691 5387 2366 92 0 0 chr12 137666794 137667098 -6615391 - AluSc SINE Alu -5 304 1 429 279 113 26 chr12 137667309 137667727 -6614762 + L2 LINE L2 2729 3190 -123 893 203 21 27 chr12 137669222 137669409 -6613080 - MER5A DNA MER1_type 0 189 4 383 245 7 0 chr12 137669914 137670061 -6612428 + (CA)n Simple_repeat Simple_repeat 1 148 0 413 262 223 22 chr12 137670437 137670666 -6611823 + LTR50 LTR ERVL 16 290 -505 1193 219 3 28 chr12 137670691 137670974 -6611515 - L1MA10 LINE L1 -9 6325 6050 245 146 49 0 chr12 137670970 137671011 -6611478 + L1M2 LINE L1 5708 5750 -547 * 340 257 70 42 chr12 137671038 137671215 -6611274 + LTR50 LTR ERVL 343 604 -191 1115 181 79 4 chr12 137671215 137671442 -6611047 - MSTA LTR MaLR 0 428 185 10729 65 8 4 chr12 137671470 137673576 -6608913 - L1PA6 LINE L1 -3 6151 4040 13452 138 3 16 chr12 137673576 137675698 -6606791 - L1PA6 LINE L1 -3899 2247 155 1108 163 53 0 chr12 137675698 137675888 -6606601 - MSTA LTR MaLR -228 200 1 855 315 52 54 chr12 137676368 137676782 -6605707 + MLT1K LTR MaLR 41 455 -133 2705 108 14 6 chr12 137676782 137677143 -6605346 - THE1B LTR MaLR 0 364 1 855 315 52 54 chr12 137677143 137677267 -6605222 + MLT1K LTR MaLR 455 578 -10 550 292 13 56 chr12 137677627 137677860 -6604629 - MIR SINE MIR 0 262 40 1556 202 104 52 chr12 137677860 137678340 -6604149 + MLT1D LTR MaLR 1 505 0 3057 217 65 30 chr12 137678351 137678491 -6603998 - L1MB8 LINE L1 0 6178 6044 2370 83 3 0 chr12 137678491 137678781 -6603708 + AluSq SINE Alu 1 291 -22 3057 217 65 30 chr12 137678781 137679654 -6602835 - L1MB8 LINE L1 -134 6044 5127 423 186 11 0 chr12 137680020 137680112 -6602377 + L1MB3 LINE L1 6082 6178 -2 1460 140 3 125 chr12 137680455 137680742 -6601747 - MER50 LTR ERV1 0 734 490 2277 93 3 0 chr12 137680742 137681032 -6601457 - AluSc SINE Alu -18 291 1 1460 140 3 125 chr12 137681032 137681072 -6601417 - MER50 LTR ERV1 -244 490 447 1136 158 27 27 chr12 137681059 137681280 -6601209 - MER50 LTR ERV1 -512 222 2 * 587 304 30 34 chr12 137681449 137681686 -6600803 + MIR SINE MIR 6 241 -21 31 68 0 0 chr12 137681691 137681750 -6600739 + AT_rich Low_complexity Low_complexity 1 59 0 478 165 22 22 chr12 137681877 137681968 -6600521 - MER46A DNA MER2_type -3 233 143 989 178 40 0 chr12 137681981 137682155 -6600334 - MER46A DNA MER2_type -55 181 1 2218 82 0 0 chr12 137682207 137682664 -6599825 + AluY SINE Alu 1 457 0 655 136 8 16 chr12 137682673 137682798 -6599691 + GA-rich Low_complexity Low_complexity 4 127 0 610 298 9 48 chr12 137683020 137683248 -6599241 + MIR SINE MIR 32 250 -12 1272 222 84 103 chr12 137683637 137684209 -6598280 - MER68 LTR ERV1 -1 561 1 259 290 40 50 chr12 137684317 137684417 -6598072 - MIR3 SINE MIR -95 113 15 2206 114 0 3 chr12 137686383 137686682 -6595807 - AluSg SINE Alu -12 298 1 487 270 108 32 chr12 137688213 137688398 -6594091 - MIR SINE MIR -36 226 28 57 47 0 0 chr12 137688852 137688937 -6593552 + AT_rich Low_complexity Low_complexity 1 85 0 387 278 69 58 chr12 137689157 137689330 -6593159 - MER5B DNA MER1_type 0 178 4 1709 181 3 7 chr12 137689556 137689860 -6592629 - AluJo SINE Alu -9 303 1 1471 245 31 8 chr12 137690637 137690992 -6591497 + MLT1A1 LTR MaLR 1 363 -2 186 43 0 0 chr12 137692416 137692439 -6590050 + (GA)n Simple_repeat Simple_repeat 1 23 0 642 316 23 5 chr12 137693139 137693354 -6589135 - MER58A DNA MER1_type -2 222 4 414 275 26 36 chr12 137693667 137693860 -6588629 - LTR67 LTR ERVL 0 557 367 267 160 0 0 chr12 137694002 137694052 -6588437 - MLT2B3 LTR ERVL -13 507 458 506 250 0 6 chr12 137694052 137694232 -6588257 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 282 216 27 14 chr12 137694233 137694307 -6588182 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 2599 171 27 65 chr12 137694308 137694801 -6587688 - MLT2B3 LTR ERVL -19 532 78 2406 140 25 8 chr12 137694801 137695159 -6587330 + THE1B LTR MaLR 1 364 0 2599 171 27 65 chr12 137695159 137695234 -6587255 - MLT2B3 LTR ERVL -473 78 2 364 254 99 73 chr12 137696847 137697079 -6585410 + MLT1L LTR MaLR 129 366 -249 25 0 0 0 chr12 137697164 137697189 -6585300 + AT_rich Low_complexity Low_complexity 1 25 0 33 43 0 0 chr12 137697265 137697312 -6585177 + AT_rich Low_complexity Low_complexity 1 47 0 507 301 145 37 chr12 137698853 137699205 -6583284 + MLT1K LTR MaLR 171 560 -28 263 340 56 14 chr12 137699324 137699468 -6583021 - L2 LINE L2 -1 3271 3122 330 248 171 75 chr12 137699858 137700245 -6582244 + L1MC4 LINE L1 7614 8037 -5 256 350 0 0 chr12 137700614 137700711 -6581778 + MER5A DNA MER1_type 5 101 -88 190 213 21 0 chr12 137701032 137701126 -6581363 + (TA)n Simple_repeat Simple_repeat 2 97 0 253 281 242 16 chr12 137701670 137701798 -6580691 + MIR SINE MIR 73 229 -33 727 259 31 31 chr12 137702463 137702687 -6579802 - MER90 LTR ERV1 -3 611 388 1767 172 13 25 chr12 137702786 137703100 -6579389 - AluSx SINE Alu -2 310 1 202 309 50 22 chr12 137703697 137703836 -6578653 + MER5B DNA MER1_type 7 149 -29 223 321 62 27 chr12 137703721 137703833 -6578656 - MER5A DNA MER1_type -30 159 44 1293 194 53 18 chr12 137703881 137704164 -6578325 + AluJb SINE Alu 1 293 -19 346 255 67 47 chr12 137704196 137704345 -6578144 + MIR SINE MIR 20 171 -91 1425 290 20 25 chr12 137704451 137704941 -6577548 - MER90 LTR ERV1 -3 611 124 10943 168 56 19 chr12 137704948 137705975 -6576514 - L1MA4A LINE L1 -7 6296 5308 249 42 42 21 chr12 137705975 137706023 -6576466 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 10943 168 56 19 chr12 137706023 137706478 -6576011 - L1MA4A LINE L1 -995 5308 4871 1812 181 0 3 chr12 137706478 137706787 -6575702 - AluSx SINE Alu -4 308 1 10943 168 56 19 chr12 137706787 137708474 -6574015 - L1MA4A LINE L1 -1432 4871 3011 244 189 75 0 chr12 137708629 137708682 -6573807 - MIR SINE MIR -38 224 168 240 35 0 0 chr12 137708714 137708743 -6573746 + (CA)n Simple_repeat Simple_repeat 2 30 0 311 242 0 44 chr12 137708775 137708866 -6573623 - L1MC4 LINE L1 -1340 6702 6616 358 248 116 23 chr12 137709062 137709191 -6573298 - MIR SINE MIR -12 250 110 708 306 62 27 chr12 137710284 137710620 -6571869 - LTR16B LTR ERVL -2 462 115 437 279 30 105 chr12 137710771 137711257 -6571232 - ERVL LTR ERVL -83 5243 4539 1496 349 48 20 chr12 137711535 137712486 -6570003 - ERVL LTR ERVL -1094 4670 3693 1881 360 52 24 chr12 137712547 137712893 -6569596 - ERVL LTR ERVL -2196 3568 3233 315 0 0 0 chr12 137712893 137712928 -6569561 + (TG)n Simple_repeat Simple_repeat 2 36 0 1881 360 52 24 chr12 137712928 137713976 -6568513 - ERVL LTR ERVL -2531 3233 2135 338 285 0 46 chr12 137714807 137714937 -6567552 - L2 LINE L2 -25 3288 3165 225 298 24 0 chr12 137715102 137715186 -6567303 - MIR SINE MIR -174 88 3 2177 133 52 35 chr12 137715899 137716268 -6566221 - THE1C LTR MaLR 0 375 1 6124 142 173 7 chr12 137716268 137717607 -6564882 - THE1C-int LTR MaLR 0 1651 5 2104 135 51 38 chr12 137717607 137717977 -6564512 - THE1C LTR MaLR 0 375 1 208 231 0 0 chr12 137718357 137718396 -6564093 + (TG)n Simple_repeat Simple_repeat 2 40 0 220 321 82 0 chr12 137718404 137718538 -6563951 - MIR SINE MIR -13 249 105 253 276 20 0 chr12 137719242 137719340 -6563149 + L1 LINE L1 4951 5050 -1096 2154 118 13 0 chr12 137719381 137719686 -6562803 + AluSc SINE Alu 1 309 0 2740 124 4 102 chr12 137720228 137720767 -6561722 + L1PB2 LINE L1 5660 6145 -6 228 321 24 0 chr12 137721397 137721481 -6561008 + MLT1L LTR MaLR 309 394 -221 202 297 68 0 chr12 137721703 137721777 -6560712 - L2 LINE L2 -221 3092 3014 205 233 150 0 chr12 137722046 137722106 -6560383 - MIR SINE MIR 0 262 194 209 33 33 0 chr12 137722437 137722467 -6560022 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 200 93 47 23 chr12 137722478 137722521 -6559968 + (TA)n Simple_repeat Simple_repeat 1 44 0 264 98 24 0 chr12 137722592 137722633 -6559856 - MIR SINE MIR -105 157 116 397 240 16 39 chr12 137722915 137723044 -6559445 - MIR SINE MIR -70 192 67 306 263 17 34 chr12 137723658 137723837 -6558652 + (TA)n Simple_repeat Simple_repeat 2 177 0 608 306 21 17 chr12 137723945 137724180 -6558309 - MIR SINE MIR -10 252 17 1517 241 66 26 chr12 137725150 137725574 -6556915 - MLT2B2 LTR ERVL -74 441 1 2922 30 12 3 chr12 137725806 137726137 -6556352 - L1PA4 LINE L1 -13 6142 5809 5112 32 3 2 chr12 137726137 137727127 -6555362 + L1P2 LINE L1 4784 5775 -380 365 268 0 63 chr12 137728502 137728629 -6553860 + MLT1K LTR MaLR 455 573 -15 300 351 136 4 chr12 137728660 137728911 -6553578 + LTR33 LTR ERVL 2 285 -236 270 337 52 29 chr12 137728930 137729102 -6553387 - MIR SINE MIR 0 262 87 258 251 67 4 chr12 137729755 137729883 -6552606 + MLT1I LTR MaLR 80 204 -205 1956 190 7 61 chr12 137730084 137730494 -6551995 + MLT1B LTR MaLR 3 390 0 607 271 116 82 chr12 137730513 137731015 -6551474 + MLT1K LTR MaLR 70 588 0 334 267 86 9 chr12 137731065 137731170 -6551319 - MIR SINE MIR -48 214 102 558 247 54 32 chr12 137731578 137731764 -6550725 - MIR SINE MIR -8 254 65 2073 97 0 4 chr12 137732565 137732834 -6549655 - AluSp SINE Alu -22 291 24 1059 138 0 0 chr12 137732834 137733051 -6549438 + (TA)n Simple_repeat Simple_repeat 1 217 0 2736 121 3 3 chr12 137733559 137733923 -6548566 + THE1B LTR MaLR 1 364 0 195 349 72 0 chr12 137734243 137734326 -6548163 + L2 LINE L2 3174 3262 -10 216 0 0 0 chr12 137735629 137735653 -6546836 + (TA)n Simple_repeat Simple_repeat 1 24 0 351 65 0 0 chr12 137735663 137735709 -6546780 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 207 392 18 29 chr12 137736095 137736266 -6546223 - L2 LINE L2 -451 2863 2695 2223 125 0 3 chr12 137737853 137738166 -6544323 - AluSx SINE Alu 0 312 1 871 246 235 11 chr12 137739135 137739598 -6542891 - LTR50 LTR ERVL -228 567 1 257 293 129 7 chr12 137739729 137739911 -6542578 - MIR SINE MIR -31 231 31 489 233 68 14 chr12 137740175 137740321 -6542168 + MER104 DNA Tc2 27 180 0 423 270 20 0 chr12 137740326 137740426 -6542063 + MER91B DNA MER1_type 86 187 -3 2175 99 7 0 chr12 137740548 137740862 -6541627 + AluSx SINE Alu 1 316 0 1629 210 135 37 chr12 137741285 137741795 -6540694 - MER68 LTR ERV1 0 562 3 2061 145 6 25 chr12 137742006 137742323 -6540166 - AluSx SINE Alu -1 311 1 1470 164 31 39 chr12 137743062 137743348 -6539141 - L1PA11 LINE L1 0 6174 5891 1781 127 23 0 chr12 137745497 137745757 -6536732 + AluSx SINE Alu 42 307 -5 1719 142 15 0 chr12 137746000 137746261 -6536228 + AluSx SINE Alu 48 312 0 397 297 168 46 chr12 137747019 137747322 -6535167 + MLT1L LTR MaLR 172 511 -104 2032 124 13 10 chr12 137747330 137747637 -6534852 - AluSx SINE Alu -4 308 1 1174 74 0 0 chr12 137747637 137747772 -6534717 - AluSq/x SINE Alu -178 135 1 350 300 36 58 chr12 137748132 137748355 -6534134 + MIR SINE MIR 28 245 -17 2961 16 0 0 chr12 137748392 137748710 -6533779 - AluYb8 SINE Alu 0 318 1 204 40 0 0 chr12 137748806 137748831 -6533658 + (GGGGA)n Simple_repeat Simple_repeat 4 28 0 381 22 0 0 chr12 137749627 137749673 -6532816 + (TG)n Simple_repeat Simple_repeat 1 46 0 2217 107 7 3 chr12 137750345 137750644 -6531845 - AluSq SINE Alu -13 300 1 2241 125 92 25 chr12 137750708 137751109 -6531380 - MSTA LTR MaLR 0 428 1 963 128 6 11 chr12 137751413 137751593 -6530896 + (ATG)n Simple_repeat Simple_repeat 2 180 0 472 311 18 0 chr12 137751624 137751788 -6530701 - MIR SINE MIR -1 261 95 22 35 0 0 chr12 137752363 137752392 -6530097 + AT_rich Low_complexity Low_complexity 1 29 0 1257 292 79 34 chr12 137752671 137753254 -6529235 + MLT2E LTR ERVL 20 628 0 349 219 43 134 chr12 137754016 137754116 -6528373 + MIR SINE MIR 92 169 -93 2168 141 0 0 chr12 137754116 137754421 -6528068 + AluSx SINE Alu 1 305 -7 349 219 43 134 chr12 137754421 137754507 -6527982 + MIR SINE MIR 169 261 -1 1571 148 33 23 chr12 137755097 137755401 -6527088 + L1MA9 LINE L1 6006 6312 0 757 206 29 59 chr12 137755407 137755644 -6526845 + AluJo SINE Alu 85 315 0 529 246 5 138 chr12 137755662 137755743 -6526746 + MIR SINE MIR 32 122 -140 2396 67 0 17 chr12 137755743 137756043 -6526446 - AluY SINE Alu -12 299 5 529 246 5 138 chr12 137756043 137756185 -6526304 + MIR SINE MIR 122 225 -37 306 0 0 0 chr12 137756443 137756476 -6526013 + U2 snRNA snRNA 1 33 -155 216 67 0 0 chr12 137756664 137756694 -6525795 + (TG)n Simple_repeat Simple_repeat 2 31 0 1464 281 61 13 chr12 137756898 137757375 -6525114 - MER41E LTR ERV1 0 512 13 2188 145 28 0 chr12 137757539 137757891 -6524598 + THE1B LTR MaLR 3 364 0 843 29 39 0 chr12 137758172 137758276 -6524213 + L1PA4 LINE L1 6043 6150 -5 360 240 78 49 chr12 137761346 137761550 -6520939 - L2 LINE L2 -195 3118 2909 456 206 51 81 chr12 137761552 137761834 -6520655 - L2 LINE L2 -249 3064 2790 1046 256 52 85 chr12 137761856 137761993 -6520496 + MLT1J LTR MaLR 24 164 -347 2451 73 3 0 chr12 137761993 137762294 -6520195 - AluY SINE Alu -9 302 1 1046 256 52 85 chr12 137762294 137762614 -6519875 + MLT1J LTR MaLR 164 465 -46 195 42 0 0 chr12 137762614 137762638 -6519851 + (TA)n Simple_repeat Simple_repeat 2 25 0 1046 256 52 85 chr12 137762638 137762683 -6519806 + MLT1J LTR MaLR 465 510 -1 579 300 32 23 chr12 137762719 137762939 -6519550 - L2 LINE L2 -558 2756 2535 238 222 0 0 chr12 137762989 137763043 -6519446 + L1MC4 LINE L1 6648 6701 -1341 455 338 50 5 chr12 137764207 137764405 -6518084 + MIR SINE MIR 7 213 -49 405 0 0 0 chr12 137764850 137764895 -6517594 + (TG)n Simple_repeat Simple_repeat 2 46 0 225 139 0 0 chr12 137765467 137765510 -6516979 + (CA)n Simple_repeat Simple_repeat 1 43 0 936 265 49 6 chr12 137765566 137766059 -6516430 + MER82 DNA MER2_type 52 652 -1 198 103 0 0 chr12 137766060 137766089 -6516400 + (TG)n Simple_repeat Simple_repeat 2 30 0 2190 249 33 11 chr12 137767112 137767662 -6514827 - MER68 LTR ERV1 0 562 1 197 340 66 0 chr12 137768185 137768291 -6514198 + L2 LINE L2 1862 1974 -1340 702 287 11 5 chr12 137768462 137768650 -6513839 - Charlie1b DNA MER1_type -334 189 1 439 307 78 8 chr12 137768678 137768725 -6513764 + L2 LINE L2 2026 2068 -1246 2351 141 98 2 chr12 137768725 137769145 -6513344 - LTR46 LTR ERV1 0 460 1 439 307 78 8 chr12 137769145 137769341 -6513148 + L2 LINE L2 2068 2286 -1028 603 295 50 61 chr12 137769764 137770106 -6512383 - MLT1K LTR MaLR -237 351 14 718 97 53 0 chr12 137770519 137770632 -6511857 - AluSp/q SINE Alu -5 308 190 327 237 108 0 chr12 137770949 137771042 -6511447 + MIR SINE MIR 22 124 -138 967 231 151 9 chr12 137771560 137771884 -6510605 - MLT1A2 LTR MaLR -4 370 1 312 274 71 0 chr12 137772069 137772182 -6510307 - MLT1K LTR MaLR -124 464 344 * 451 222 117 97 chr12 137772171 137772419 -6510070 - MER102b DNA MER1_type -24 317 65 584 333 85 45 chr12 137772807 137773276 -6509213 + MLT1K LTR MaLR 3 490 -98 1044 213 88 125 chr12 137774014 137774502 -6507987 - LTR33A LTR ERVL -14 509 40 478 254 32 45 chr12 137776820 137777040 -6505449 - L1ME4a LINE L1 -268 5853 5637 374 350 50 5 chr12 137777165 137777365 -6505124 - MIR SINE MIR -34 228 20 417 158 0 12 chr12 137778292 137778374 -6504115 - L1MD3 LINE L1 -1 7994 7914 714 295 41 33 chr12 137779037 137779400 -6503089 + MER113 DNA MER1_type? 37 402 -119 274 321 37 0 chr12 137779624 137779733 -6502756 - MIR3 SINE MIR -6 202 90 2382 81 3 0 chr12 137779920 137780218 -6502271 + AluSp SINE Alu 1 299 -14 322 250 27 18 chr12 137782027 137782133 -6500356 - MLT1K LTR MaLR 0 588 482 496 195 0 62 chr12 137782133 137782246 -6500243 - ORSL DNA AcHobo 0 275 170 194 376 112 10 chr12 137782445 137782642 -6499847 + L2 LINE L2 2836 3052 -261 2264 105 3 16 chr12 137782663 137782977 -6499512 + AluSx SINE Alu 1 310 -2 304 306 71 46 chr12 137783133 137783329 -6499160 - MLT1K LTR MaLR -341 247 47 3241 94 24 0 chr12 137783526 137783982 -6498507 - L1PA11 LINE L1 0 6174 5708 2268 94 0 10 chr12 137784709 137785006 -6497483 - AluSq SINE Alu -19 294 1 269 243 0 27 chr12 137785041 137785115 -6497374 + MER116 DNA Mariner 9 80 0 1687 172 3 13 chr12 137786031 137786334 -6496155 - AluJo SINE Alu -1 311 12 696 267 130 60 chr12 137786883 137787313 -6495176 + MLT1H LTR MaLR 87 546 -3 219 36 0 0 chr12 137787313 137787341 -6495148 + (CA)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr12 137787501 137787521 -6494968 + (T)n Simple_repeat Simple_repeat 1 20 0 455 253 54 61 chr12 137787830 137788107 -6494382 - L1MC4a LINE L1 -1889 5919 5645 826 307 48 48 chr12 137788276 137788797 -6493692 + LTR33 LTR ERVL 1 521 0 1782 251 74 13 chr12 137789622 137790097 -6492392 - MLT1D LTR MaLR -1 504 1 232 163 70 0 chr12 137790531 137790574 -6491915 + Charlie7 DNA MER1_type 1110 1155 -1457 210 390 20 0 chr12 137790574 137790674 -6491815 + L2 LINE L2 3136 3237 -35 402 288 106 48 chr12 137790740 137791032 -6491457 - MER102a DNA MER1_type -21 309 1 36 23 0 0 chr12 137791509 137791552 -6490937 + AT_rich Low_complexity Low_complexity 1 43 0 228 35 0 0 chr12 137792145 137792174 -6490315 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 281 244 196 83 chr12 137792444 137792673 -6489816 + MLT1H LTR MaLR 50 304 -245 452 293 72 29 chr12 137793116 137793324 -6489165 + MIR SINE MIR 2 218 -44 184 274 20 0 chr12 137793382 137793433 -6489056 + L2 LINE L2 3221 3272 0 227 289 21 62 chr12 137794079 137794176 -6488313 + LTR67 LTR ERVL 99 191 -366 * 449 277 101 61 chr12 137794094 137794485 -6488004 + MLT1L LTR MaLR 110 591 -24 295 333 31 18 chr12 137794722 137794885 -6487604 - MIR SINE MIR -36 172 2 446 314 8 0 chr12 137795049 137795170 -6487319 - MIR SINE MIR -98 164 43 2931 184 38 40 chr12 137795177 137795445 -6487044 + LTR26 LTR ERV1 1 268 -335 2257 141 48 22 chr12 137795445 137795800 -6486689 - THE1B LTR MaLR 0 364 1 2931 184 38 40 chr12 137795800 137796135 -6486354 + LTR26 LTR ERV1 268 603 0 485 278 28 11 chr12 137796207 137796363 -6486126 - MIR SINE MIR -63 145 3 961 281 80 30 chr12 137796577 137796886 -6485603 - MLT1K LTR MaLR -43 545 210 2197 188 75 5 chr12 137796886 137797284 -6485205 + MSTB LTR MaLR 1 426 0 961 281 80 30 chr12 137797284 137797376 -6485113 - MLT1K LTR MaLR -378 210 124 1018 265 148 19 chr12 137797758 137798170 -6484319 - MER31B LTR ERV1 -1 465 1 832 146 0 36 chr12 137798274 137798411 -6484078 - FLAM_C SINE Alu -11 132 1 2158 248 42 15 chr12 137799225 137799683 -6482806 + MER87 LTR ERV1 1 476 -65 5462 164 74 35 chr12 137799683 137800664 -6481825 + LTR28 LTR ERV1 1 1020 0 2158 248 42 15 chr12 137800664 137800726 -6481763 + MER87 LTR ERV1 476 535 -6 21 57 0 0 chr12 137800809 137800844 -6481645 + AT_rich Low_complexity Low_complexity 1 35 0 2044 145 0 13 chr12 137800885 137801202 -6481287 - AluSq SINE Alu 0 313 1 2116 121 6 19 chr12 137801822 137802136 -6480353 - AluSx SINE Alu -2 310 1 367 305 85 14 chr12 137802194 137802417 -6480072 + MIR SINE MIR 6 244 -18 390 259 93 15 chr12 137802525 137802730 -6479759 - LTR37B LTR ERV1 -5 463 243 618 268 127 71 chr12 137802841 137802920 -6479569 - MLT1F1 LTR MaLR -206 361 288 207 0 0 0 chr12 137802920 137802943 -6479546 + (TTG)n Simple_repeat Simple_repeat 2 24 0 618 268 127 71 chr12 137802943 137803061 -6479428 - MLT1F1 LTR MaLR -279 288 178 2361 120 47 33 chr12 137803061 137803420 -6479069 - THE1B LTR MaLR 0 364 1 618 268 127 71 chr12 137803420 137803560 -6478929 - MLT1F1 LTR MaLR -389 178 4 448 317 54 21 chr12 137803564 137803750 -6478739 - MLT1I LTR MaLR -34 375 184 4211 234 52 26 chr12 137803756 137805018 -6477471 + L1M4 LINE L1 3831 5124 -1022 682 213 92 49 chr12 137805112 137805366 -6477123 - LTR12 LTR ERV1 -242 2196 231 2017 110 45 10 chr12 137805688 137805979 -6476510 - AluSg SINE Alu -9 301 1 381 307 44 60 chr12 137806556 137806659 -6475830 - L2 LINE L2 -831 2483 2380 312 91 0 0 chr12 137806659 137806703 -6475786 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 381 307 44 60 chr12 137806703 137806850 -6475639 - L2 LINE L2 -934 2380 2237 236 338 7 26 chr12 137807687 137807841 -6474648 + MLT1I LTR MaLR 56 206 -203 1880 123 0 11 chr12 137808118 137808386 -6474103 - AluSg SINE Alu -10 300 36 2118 107 7 7 chr12 137808561 137808852 -6473637 + AluSc SINE Alu 1 291 -18 2106 151 45 16 chr12 137809237 137809614 -6472875 + MER61D LTR ERV1 114 501 0 216 0 0 0 chr12 137809662 137809686 -6472803 + (CA)n Simple_repeat Simple_repeat 1 24 0 427 325 110 12 chr12 137809690 137809945 -6472544 - L1ME3 LINE L1 -216 5946 5667 214 169 51 0 chr12 137810015 137810074 -6472415 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 515 326 30 33 chr12 137810094 137810487 -6472002 - L1ME3 LINE L1 -514 5648 5257 377 321 72 34 chr12 137810633 137810842 -6471647 - MIR SINE MIR -28 234 18 216 0 0 0 chr12 137810948 137810972 -6471517 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 185 324 127 0 chr12 137811003 137811074 -6471415 - L2 LINE L2 -5 3267 3188 5338 259 43 37 chr12 137811143 137813349 -6469140 + L1M4 LINE L1 3073 5291 -855 402 74 0 0 chr12 137813698 137813752 -6468737 + (CA)n Simple_repeat Simple_repeat 2 55 0 180 183 33 17 chr12 137813932 137813992 -6468497 + CT-rich Low_complexity Low_complexity 3 63 0 206 274 0 20 chr12 137814267 137814318 -6468171 - MIR SINE MIR -140 68 19 531 0 0 0 chr12 137814487 137814546 -6467943 + (TC)n Simple_repeat Simple_repeat 1 59 0 1715 242 72 30 chr12 137816261 137816785 -6465704 + MER68 LTR ERV1 15 560 -2 576 257 59 83 chr12 137817874 137818023 -6464466 + MLT1C LTR MaLR 66 206 -261 2291 94 10 0 chr12 137818023 137818320 -6464169 + AluSp SINE Alu 1 300 -13 576 257 59 83 chr12 137818320 137818458 -6464031 + MLT1C LTR MaLR 206 346 -121 2189 108 3 3 chr12 137818896 137819247 -6463242 - AluSq SINE Alu 0 352 2 24 0 0 0 chr12 137819247 137819271 -6463218 + AT_rich Low_complexity Low_complexity 1 24 0 1140 140 32 38 chr12 137821174 137821360 -6461129 - AluSx SINE Alu -83 229 45 711 187 5 80 chr12 137822076 137822263 -6460226 + L1PA15 LINE L1 5984 6156 -9 789 239 17 0 chr12 137823151 137823327 -6459162 + MER58A DNA MER1_type 46 224 0 262 277 60 24 chr12 137823341 137823424 -6459065 + MIR SINE MIR 43 128 -134 1901 144 16 13 chr12 137823944 137824249 -6458240 - AluSx SINE Alu -1 311 6 243 0 0 0 chr12 137824608 137824635 -6457854 + (TG)n Simple_repeat Simple_repeat 2 28 0 1793 152 45 3 chr12 137824635 137824925 -6457564 - AluSx SINE Alu -9 303 2 366 293 93 65 chr12 137824958 137825569 -6456920 - HAL1b LINE L1 -4 1344 717 1176 167 135 12 chr12 137825632 137825955 -6456534 - AluSg1 SINE Alu 0 358 6 231 290 84 28 chr12 137826046 137826153 -6456336 - L2 LINE L2 -2 3270 3158 404 105 0 0 chr12 137827135 137827192 -6455297 + AluJb SINE Alu 76 132 -180 44 20 0 0 chr12 137827193 137827244 -6455245 + AT_rich Low_complexity Low_complexity 1 51 0 180 0 0 0 chr12 137827468 137827488 -6455001 + (TA)n Simple_repeat Simple_repeat 2 21 0 1173 142 0 22 chr12 137827491 137827674 -6454815 + AluSg/x SINE Alu 132 310 0 1148 243 80 65 chr12 137827675 137828198 -6454291 - MLT1E2 LTR MaLR -67 499 1 2296 128 0 0 chr12 137828546 137828858 -6453631 - AluSx SINE Alu 0 312 1 183 278 194 0 chr12 137829738 137829810 -6452679 + L2 LINE L2 3227 3312 -1 1901 172 19 78 chr12 137830319 137830460 -6452029 + MLT1B LTR MaLR 1 149 -241 1580 156 40 36 chr12 137830460 137830762 -6451727 - AluJo SINE Alu -5 307 5 1901 172 19 78 chr12 137830762 137831033 -6451456 + MLT1B LTR MaLR 149 389 -1 1706 261 49 31 chr12 137831399 137832008 -6450481 - L1M4 LINE L1 -1458 5186 4567 749 210 27 21 chr12 137832002 137832188 -6450301 - L1M4 LINE L1 -5359 1183 997 * 1493 248 19 39 chr12 137832213 137832644 -6449845 - L1M4 LINE L1 -6105 437 16 532 335 49 34 chr12 137832843 137833311 -6449178 - L2 LINE L2 0 3313 2839 238 296 38 18 chr12 137833453 137833636 -6448853 + L1MC/D LINE L1 5594 5779 -360 34 0 0 0 chr12 137833855 137833889 -6448600 + AT_rich Low_complexity Low_complexity 1 34 0 294 194 0 0 chr12 137833917 137833989 -6448500 + (CATA)n Simple_repeat Simple_repeat 1 72 0 355 296 59 38 chr12 137835069 137835255 -6447234 + MLT1K LTR MaLR 376 565 -23 536 362 49 25 chr12 137836321 137836688 -6445801 - MLT1I LTR MaLR -9 400 25 1181 227 49 64 chr12 137837071 137837222 -6445267 - L1MA9 LINE L1 -38 6274 6122 2085 121 3 7 chr12 137837222 137837520 -6444969 - AluSx SINE Alu -15 297 1 1181 227 49 64 chr12 137837520 137837774 -6444715 - L1MA9 LINE L1 -190 6122 5875 1495 159 21 83 chr12 137837828 137838154 -6444335 + AluJo SINE Alu 1 306 -6 2283 126 48 31 chr12 137838618 137838976 -6443513 - THE1B LTR MaLR 0 364 1 244 299 52 22 chr12 137840228 137840362 -6442127 + L1ME2 LINE L1 5474 5611 -510 234 311 43 61 chr12 137840469 137840541 -6441948 - L1ME LINE L1 -234 5887 5815 2262 100 0 35 chr12 137840541 137840860 -6441629 - AluSq SINE Alu -5 308 1 234 311 43 61 chr12 137840860 137841064 -6441425 - L1ME LINE L1 -306 5815 5616 1193 309 80 24 chr12 137841401 137842348 -6440141 - L2 LINE L2 -6 3307 2305 1797 157 7 0 chr12 137842599 137842879 -6439610 - AluJo SINE Alu -30 282 1 494 254 8 22 chr12 137843404 137843538 -6438951 + MER58B DNA MER1_type 199 330 -11 425 285 57 0 chr12 137844144 137844267 -6438222 + MER91B DNA MER1_type 1 130 -60 286 299 34 8 chr12 137844425 137844542 -6437947 - L2 LINE L2 -8 3264 3145 688 298 21 31 chr12 137844777 137845066 -6437423 - MER113 DNA MER1_type? -3 518 233 34 55 0 14 chr12 137845092 137845131 -6437358 + AT_rich Low_complexity Low_complexity 1 40 -32 1984 133 3 3 chr12 137845131 137845440 -6437049 + AluSx SINE Alu 1 309 -3 34 55 0 14 chr12 137845440 137845473 -6437016 + AT_rich Low_complexity Low_complexity 40 72 0 367 255 32 11 chr12 137846163 137846257 -6436232 + MIR3 SINE MIR 67 162 -46 218 232 14 14 chr12 137846258 137846327 -6436162 + T-rich Low_complexity Low_complexity 5 73 0 * 239 330 0 10 chr12 137846288 137846388 -6436101 + CT-rich Low_complexity Low_complexity 2 100 0 506 108 72 24 chr12 137846400 137846566 -6435923 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 2752 123 12 2 chr12 137847167 137847590 -6434899 - L1P4 LINE L1 -358 5810 5384 316 285 73 53 chr12 137848027 137848178 -6434311 + L1ME2 LINE L1 5731 5884 -280 2065 133 0 7 chr12 137848286 137848588 -6433901 - AluSq SINE Alu -13 300 1 298 308 0 0 chr12 137848594 137848698 -6433791 + MLT1D LTR MaLR 402 505 0 572 267 6 8 chr12 137899192 137899410 -6383079 + L1ME LINE L1 789 1038 -5066 318 298 239 14 chr12 137900008 137900297 -6382192 + MLT1L LTR MaLR 186 539 -76 478 290 58 40 chr12 137900330 137900554 -6381935 + L1MCc LINE L1 227 454 -5969 1751 165 78 98 chr12 137900839 137901091 -6381398 - MSTA LTR MaLR 0 428 187 2491 51 3 10 chr12 137901091 137901404 -6381085 - AluY SINE Alu 0 311 1 1751 165 78 98 chr12 137901404 137901588 -6380901 - MSTA LTR MaLR -241 187 1 198 0 0 0 chr12 137901808 137901830 -6380659 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 277 286 66 71 chr12 137902296 137902535 -6379954 - MIR SINE MIR -2 260 30 1952 156 0 25 chr12 137902651 137902966 -6379523 - AluSx SINE Alu -5 307 1 721 167 25 98 chr12 137903799 137904003 -6378486 + MLT1D LTR MaLR 1 189 -316 316 89 36 18 chr12 137904005 137904061 -6378428 + FRAM/FAM SINE Alu 31 87 -88 22 35 0 0 chr12 137904587 137904616 -6377873 + AT_rich Low_complexity Low_complexity 1 29 0 726 275 0 5 chr12 137904959 137905152 -6377337 - L1MEc LINE L1 -5692 704 513 1536 164 44 3 chr12 137905256 137905549 -6376940 - L1MA4 LINE L1 -5 6295 5991 359 300 10 10 chr12 137905550 137905650 -6376839 - L1MEc LINE L1 -5917 479 380 185 32 0 65 chr12 137905662 137905693 -6376796 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 711 306 22 40 chr12 137905695 137906019 -6376470 - L1MEc LINE L1 -6032 364 47 256 285 35 106 chr12 137906935 137907106 -6375383 - MER102a DNA MER1_type -1103 314 165 1602 156 45 24 chr12 137907106 137907395 -6375094 - L1MB1 LINE L1 -5 6163 5869 256 285 35 106 chr12 137907395 137907479 -6375010 - MER102a DNA MER1_type -1252 165 77 325 273 45 9 chr12 137907756 137907866 -6374623 - L1MA9 LINE L1 -131 6181 6068 355 279 50 44 chr12 137908429 137908587 -6373902 + MIR SINE MIR 26 183 -65 601 302 42 14 chr12 137908711 137908936 -6373553 - MIR SINE MIR -10 252 25 357 248 15 8 chr12 137909024 137909157 -6373332 + (TA)n Simple_repeat Simple_repeat 2 135 0 660 248 7 0 chr12 137909157 137909302 -6373187 + MER6 DNA MER2_type -1 865 0 243 103 0 0 chr12 137909307 137909346 -6373143 + (GA)n Simple_repeat Simple_repeat 1 39 0 2013 165 0 16 chr12 137909966 137910282 -6372207 - AluSx SINE Alu -1 311 1 2141 88 50 0 chr12 137911238 137911521 -6370968 - AluSx SINE Alu -15 297 1 227 178 0 0 chr12 137911917 137911962 -6370527 + LTR66 LTR ERVL 400 444 -166 2127 146 29 64 chr12 137912240 137912294 -6370195 - THE1B LTR MaLR 0 364 310 2243 106 3 0 chr12 137912294 137912587 -6369902 - AluSg SINE Alu -16 294 1 2127 146 29 64 chr12 137912587 137912909 -6369580 - THE1B LTR MaLR -54 310 1 1703 169 0 70 chr12 137914891 137915222 -6367267 + AluJo SINE Alu 1 308 -4 211 206 29 15 chr12 137915883 137915951 -6366538 + T-rich Low_complexity Low_complexity 1 69 0 25 51 0 0 chr12 137915977 137916016 -6366473 + AT_rich Low_complexity Low_complexity 1 39 0 42 20 0 0 chr12 137916067 137916116 -6366373 + AT_rich Low_complexity Low_complexity 1 49 0 2193 81 0 75 chr12 137916122 137916255 -6366234 - L1PA14 LINE L1 0 6161 6020 2113 119 3 7 chr12 137916255 137916548 -6365941 - AluSx SINE Alu -8 304 13 2193 81 0 75 chr12 137916548 137916749 -6365740 - L1PA14 LINE L1 -141 6020 5852 22 0 0 0 chr12 137917197 137917219 -6365270 + AT_rich Low_complexity Low_complexity 1 22 0 1895 78 11 22 chr12 137917807 137918077 -6364412 - L1PA13 LINE L1 -2 6161 5895 953 179 0 0 chr12 137918077 137918245 -6364244 - L1P LINE L1 -1875 4271 4104 1954 139 14 0 chr12 137920101 137920396 -6362093 + AluSx SINE Alu 1 299 -13 303 70 0 0 chr12 137921082 137921125 -6361364 + AluSg SINE Alu 34 76 -224 2847 13 0 0 chr12 137921125 137921434 -6361055 + AluYb8 SINE Alu 1 309 -9 1789 85 0 0 chr12 137921434 137921657 -6360832 + AluSg SINE Alu 65 287 -23 56 39 0 0 chr12 137921657 137921734 -6360755 + AT_rich Low_complexity Low_complexity 1 77 0 1899 162 3 20 chr12 137921736 137922039 -6360450 + AluSx SINE Alu 3 300 -12 300 267 127 27 chr12 137922998 137923148 -6359341 + L1M4 LINE L1 4998 5162 -984 2281 129 68 38 chr12 137923150 137923597 -6358892 + MER4B LTR ERV1 192 610 0 237 65 0 0 chr12 137925167 137925198 -6357291 + (A)n Simple_repeat Simple_repeat 1 31 0 2143 116 0 17 chr12 137925627 137925928 -6356561 + AluSx SINE Alu 1 296 -16 2326 98 3 0 chr12 137926627 137926932 -6355557 + AluSp SINE Alu 1 306 -7 237 33 0 0 chr12 137927033 137927063 -6355426 + (TC)n Simple_repeat Simple_repeat 1 30 0 1199 265 96 29 chr12 137927672 137928162 -6354327 + L1MEc LINE L1 39 561 -5835 2498 74 3 0 chr12 137928956 137929268 -6353221 + AluSp SINE Alu 1 313 0 243 274 96 21 chr12 137929270 137929391 -6353098 - MIR SINE MIR -76 132 32 413 299 97 33 chr12 137929566 137929897 -6352592 + L1MCc LINE L1 17 368 -6055 237 350 25 71 chr12 137930635 137930961 -6351528 + MLT1H LTR MaLR 40 350 -199 268 331 174 17 chr12 137931078 137931250 -6351239 + L2 LINE L2 3115 3313 0 * 279 300 81 50 chr12 137931241 137931401 -6351088 - MIR SINE MIR -58 204 40 267 347 18 71 chr12 137931801 137931893 -6350596 - L2 LINE L2 -16 3297 3202 708 74 0 0 chr12 137931893 137931988 -6350501 + (TA)n Simple_repeat Simple_repeat 2 96 0 2355 94 0 0 chr12 137931989 137932287 -6350202 - AluSc SINE Alu -11 298 1 267 347 18 71 chr12 137932287 137932587 -6349902 - L2 LINE L2 -110 3203 2924 234 266 16 0 chr12 137932893 137932957 -6349532 + CT-rich Low_complexity Low_complexity 1 65 0 217 314 263 0 chr12 137933028 137933184 -6349305 + L3 LINE CR1 1288 1484 -93 316 216 29 140 chr12 137933186 137933357 -6349132 - LTR67 LTR ERVL -1 556 405 2825 122 7 7 chr12 137934891 137935319 -6347170 + MER84 LTR ERVI 1 428 -79 1422 67 0 0 chr12 137935319 137935497 -6346992 - L1PA13 LINE L1 -406 5757 5580 730 74 0 0 chr12 137935494 137935589 -6346900 + L1PA13 LINE L1 5790 5884 -284 * 356 93 0 0 chr12 137935590 137935644 -6346845 + L1PA13 LINE L1 6106 6159 -4 549 175 21 0 chr12 137935647 137935744 -6346745 + MER84 LTR ERVI 409 507 0 520 163 26 206 chr12 137935878 137936111 -6346378 - MLT2C1 LTR ERVL -5 392 202 201 143 41 20 chr12 137937028 137937077 -6345412 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1066 220 28 5 chr12 137937544 137937758 -6344731 + MER20 DNA MER1_type 1 219 0 858 324 55 9 chr12 137937895 137938222 -6344267 + MLT1J2 LTR MaLR 109 450 0 226 309 29 0 chr12 137938439 137938507 -6343982 - MLT1K LTR MaLR -349 239 170 330 247 12 12 chr12 137939480 137939565 -6342924 + MER91A DNA MER1_type 1 85 -111 252 307 35 26 chr12 137939573 137939687 -6342802 + MLT1J2 LTR MaLR 1 115 -440 213 39 0 0 chr12 137939885 137939911 -6342578 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 462 268 89 68 chr12 137940720 137941056 -6341433 - MLT1J1 LTR MaLR -94 352 10 230 385 10 19 chr12 137941129 137941233 -6341256 + LTR67 LTR ERVL 102 204 -353 2110 58 19 0 chr12 137942481 137942738 -6339751 + L1PA8 LINE L1 5909 6170 -2 937 234 23 5 chr12 137942848 137943062 -6339427 - MER20 DNA MER1_type -1 218 1 316 313 89 0 chr12 137943517 137943629 -6338860 + MLT1J2 LTR MaLR 283 404 -46 265 255 94 9 chr12 137943784 137943890 -6338599 + Charlie8 DNA MER1_type 66 180 -2237 1898 158 10 3 chr12 137944743 137945041 -6337448 + AluSx SINE Alu 1 300 -12 296 312 74 30 chr12 137945250 137945452 -6337037 - MLT1K LTR MaLR -61 527 317 2277 246 29 4 chr12 137945498 137946046 -6336443 + MER68 LTR ERV1 1 562 0 2180 104 3 0 chr12 137946983 137947280 -6335209 + AluSx SINE Alu 1 298 -14 240 239 68 0 chr12 137947319 137947407 -6335082 - L2 LINE L2 -211 3061 2968 369 265 127 58 chr12 137947452 137947799 -6334690 - MLT1L LTR MaLR -28 587 217 362 264 17 6 chr12 137947971 137948149 -6334340 + GA-rich Low_complexity Low_complexity 1 180 0 275 278 23 0 chr12 137948171 137948347 -6334142 + GA-rich Low_complexity Low_complexity 1 180 0 247 246 0 16 chr12 137948564 137948625 -6333864 + (TG)n Simple_repeat Simple_repeat 1 60 0 1422 155 0 39 chr12 137949027 137949329 -6333160 - AluJo SINE Alu 0 326 35 378 282 117 7 chr12 137949332 137949630 -6332859 - HAL1 LINE L1 -1590 917 587 4133 82 48 3 chr12 137949756 137950340 -6332149 - LTR66 LTR ERVL 0 610 1 229 286 130 30 chr12 137950376 137950607 -6331882 - HAL1 LINE L1 -2243 264 11 207 0 0 0 chr12 137951412 137951435 -6331054 + (T)n Simple_repeat Simple_repeat 1 23 0 254 230 27 0 chr12 137952002 137952076 -6330413 + CT-rich Low_complexity Low_complexity 2 77 0 3947 100 5 0 chr12 137952525 137953076 -6329413 - MER41A LTR ERV1 0 554 1 1808 155 0 21 chr12 137953855 137954145 -6328344 - AluJb SINE Alu -28 284 1 1540 112 5 0 chr12 137954154 137954360 -6328129 - AluSg/x SINE Alu -13 296 90 4280 103 8 5 chr12 137954485 137955118 -6327371 - MER41B LTR ERV1 0 635 1 653 188 2 0 chr12 137955250 137955679 -6326810 + (TG)n Simple_repeat Simple_repeat 1 430 0 198 327 119 0 chr12 137955968 137956069 -6326420 + L2 LINE L2 3199 3311 -2 1942 84 67 3 chr12 137956866 137957150 -6325339 + AluY SINE Alu 1 302 -9 3779 137 22 2 chr12 137957370 137957992 -6324497 - MER41B LTR ERV1 0 635 1 22 0 0 0 chr12 137958069 137958091 -6324398 + AT_rich Low_complexity Low_complexity 1 22 0 235 286 75 75 chr12 137958706 137958853 -6323636 + MIR SINE MIR 59 205 -57 1753 264 43 23 chr12 137958966 137959670 -6322819 + Charlie1 DNA MER1_type 14 731 -2030 681 186 0 7 chr12 137959670 137959718 -6322771 + L1MA5A LINE L1 5984 6031 -266 1616 136 0 0 chr12 137959718 137959939 -6322550 + AluSg/x SINE Alu 71 291 -19 681 186 0 7 chr12 137959939 137960035 -6322454 + L1MA5A LINE L1 6031 6127 -170 852 161 28 17 chr12 137960399 137960579 -6321910 + L1MA5A LINE L1 6113 6294 -3 609 346 13 3 chr12 137960822 137961128 -6321361 + Charlie1 DNA MER1_type 940 1248 -1513 2137 101 0 29 chr12 137961191 137961498 -6320991 + AluSq SINE Alu 1 298 -15 3252 251 90 27 chr12 137961924 137962372 -6320117 + Charlie1 DNA MER1_type 1239 1657 -1104 2549 44 3 25 chr12 137962372 137962690 -6319799 + AluY SINE Alu 1 311 0 3252 251 90 27 chr12 137962690 137963665 -6318824 + Charlie1 DNA MER1_type 1657 2752 -9 189 338 15 0 chr12 137963700 137963768 -6318721 + L2 LINE L2 3244 3312 -1 367 270 13 40 chr12 137963842 137964045 -6318444 - MLT1J1 LTR MaLR -8 481 309 250 284 20 10 chr12 137966125 137966227 -6316262 + (TA)n Simple_repeat Simple_repeat 1 103 0 375 286 104 51 chr12 137966775 137967111 -6315378 - LTR16C LTR ERVL 0 491 138 2089 240 23 5 chr12 137967908 137968463 -6314026 - L1MB5 LINE L1 -10 6164 5600 1122 218 76 16 chr12 137968464 137968645 -6313844 + L1MB7 LINE L1 5012 5181 -993 2134 88 17 10 chr12 137968645 137968969 -6313520 + AluY SINE Alu 1 311 0 1122 218 76 16 chr12 137968969 137969235 -6313254 + L1MB7 LINE L1 5181 5504 -670 243 88 0 0 chr12 137969235 137969269 -6313220 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1122 218 76 16 chr12 137969269 137969386 -6313103 + L1MB7 LINE L1 5504 5613 -561 356 94 0 0 chr12 137969404 137969457 -6313032 - MADE1 DNA Mariner 0 80 28 275 88 0 70 chr12 137969556 137969613 -6312876 - MADE1 DNA Mariner -27 53 1 1071 177 48 16 chr12 137969614 137969863 -6312626 + L1MB7 LINE L1 5634 5890 -288 2353 98 0 25 chr12 137969866 137970183 -6312306 + AluSc SINE Alu 1 309 0 1406 242 108 17 chr12 137970207 137970670 -6311819 - MLT1D LTR MaLR 0 505 1 1750 184 3 10 chr12 137970694 137971003 -6311486 - AluJo SINE Alu -5 307 1 1231 162 73 0 chr12 137971003 137971250 -6311239 + L1MB7 LINE L1 5910 6174 -10 202 234 0 0 chr12 137971606 137971653 -6310836 + (TAA)n Simple_repeat Simple_repeat 1 47 0 2240 114 0 7 chr12 137971700 137971998 -6310491 - AluSx SINE Alu -16 296 1 454 326 63 25 chr12 137971999 137972238 -6310251 - MIR SINE MIR -3 259 12 636 247 87 0 chr12 137973811 137973961 -6308528 - FAM SINE Alu -12 163 1 2657 32 0 0 chr12 137974033 137974342 -6308147 + AluY SINE Alu 1 309 -2 752 285 11 27 chr12 137975684 137975947 -6306542 - LTR16C LTR ERVL -19 472 214 539 355 89 19 chr12 137975953 137976322 -6306167 + L2 LINE L2 438 832 -2482 2038 165 0 16 chr12 137976893 137977208 -6305281 + AluSx SINE Alu 1 310 -2 237 83 0 0 chr12 137977835 137977871 -6304618 + (TC)n Simple_repeat Simple_repeat 1 36 0 601 248 7 0 chr12 137977876 137978021 -6304468 - MER6 DNA MER2_type 0 865 -1 378 226 0 23 chr12 137978026 137978159 -6304330 + (TTTA)n Simple_repeat Simple_repeat 2 131 0 618 220 0 0 chr12 137978162 137978339 -6304150 + (TA)n Simple_repeat Simple_repeat 1 177 0 315 340 28 16 chr12 137978462 137978709 -6303780 - MLT1K LTR MaLR -12 576 327 600 302 42 14 chr12 137978887 137979112 -6303377 + MIR SINE MIR 25 252 -10 361 279 50 44 chr12 137979237 137979395 -6303094 - MIR SINE MIR -65 143 26 222 365 10 19 chr12 137981278 137981382 -6301107 + MIR SINE MIR 90 192 -70 1990 143 3 16 chr12 137981826 137982140 -6300349 + AluSx SINE Alu 1 310 -2 233 307 0 63 chr12 137982274 137982401 -6300088 - MER117 DNA MER1_type -65 132 14 441 271 70 37 chr12 137982823 137983037 -6299452 - MLT1J LTR MaLR -290 221 1 1527 209 36 0 chr12 137984207 137984485 -6298004 + AluJo SINE Alu 1 288 -24 2236 86 0 25 chr12 137984494 137984809 -6297680 + AluY SINE Alu 1 307 -4 1754 176 37 106 chr12 137984879 137985104 -6297385 + L1MA9 LINE L1 5607 5846 -466 321 47 0 0 chr12 137985104 137985147 -6297342 + (TG)n Simple_repeat Simple_repeat 2 44 0 1754 176 37 106 chr12 137985147 137985488 -6297001 + L1MA9 LINE L1 5846 6134 -178 213 152 0 0 chr12 137985959 137985992 -6296497 + L2 LINE L2 3281 3313 0 234 59 0 0 chr12 137986002 137986036 -6296453 - HSMAR1 DNA Mariner -1253 34 1 28 0 0 0 chr12 137986060 137986088 -6296401 + AT_rich Low_complexity Low_complexity 1 28 0 1584 198 7 13 chr12 137986192 137986495 -6295994 + AluJo SINE Alu 1 301 -11 1612 214 43 54 chr12 137986596 137987222 -6295267 - LTR28 LTR ERV1 -22 804 109 391 249 52 3 chr12 137987236 137987395 -6295094 - LTR28 LTR ERV1 -462 174 3 23 33 0 0 chr12 137987432 137987462 -6295027 + AT_rich Low_complexity Low_complexity 1 30 0 435 198 17 34 chr12 137988603 137988780 -6293709 + (TATG)n Simple_repeat Simple_repeat 3 176 0 509 210 11 28 chr12 137988825 137989006 -6293483 + (TATG)n Simple_repeat Simple_repeat 1 178 0 291 304 22 0 chr12 137989013 137989105 -6293384 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 360 169 0 0 chr12 137989106 137989183 -6293306 + (TG)n Simple_repeat Simple_repeat 2 78 0 976 100 62 12 chr12 137989286 137989446 -6293043 + L1PA11 LINE L1 6007 6174 0 4903 182 19 6 chr12 137989768 137990757 -6291732 + L1MC1 LINE L1 5321 6322 -11 1965 181 14 27 chr12 137991690 137992060 -6290429 - MLT1A1 LTR MaLR 0 365 1 26 50 0 0 chr12 137992417 137992457 -6290032 + AT_rich Low_complexity Low_complexity 1 40 0 302 257 86 11 chr12 137992784 137992971 -6289518 - MER114 LTR ERV -3 645 445 347 204 45 53 chr12 137993011 137993143 -6289346 - L1MA7 LINE L1 -7 6284 6154 530 257 51 80 chr12 137993307 137993833 -6288656 + MER34 LTR ERV1 4 514 -28 405 309 56 13 chr12 137993902 137994135 -6288354 + L1MCc LINE L1 81 323 -6100 527 159 8 91 chr12 137994151 137994283 -6288206 - LTR8 LTR ERV1 0 691 571 507 318 92 54 chr12 137994283 137994861 -6287628 + L1MCc LINE L1 365 964 -5459 674 272 74 30 chr12 137994866 137995236 -6287253 + L1MCc LINE L1 1020 1414 -5009 349 332 111 5 chr12 137995259 137995467 -6287022 + L2 LINE L2 3084 3313 0 2034 78 3 35 chr12 137996253 137996535 -6285954 + AluSp SINE Alu 39 311 -2 460 249 52 35 chr12 137997073 137997246 -6285243 + MIR SINE MIR 61 236 -26 3323 46 37 0 chr12 137997258 137997668 -6284821 + L1PA3 LINE L1 5731 6155 0 520 155 60 115 chr12 137997844 137997963 -6284526 + LTR36 LTR ERV1 1 106 -505 1644 197 7 0 chr12 137997963 137998258 -6284231 - AluJo SINE Alu -15 297 1 520 155 60 115 chr12 137998258 137998338 -6284151 + LTR36 LTR ERV1 106 189 -422 965 199 122 9 chr12 137998393 137998614 -6283875 + LTR36 LTR ERV1 366 611 0 2015 104 27 14 chr12 137998745 137999042 -6283447 + AluSx SINE Alu 1 301 -11 365 262 0 0 chr12 138000730 138000814 -6281675 + MER20 DNA MER1_type 2 85 -134 32 0 0 0 chr12 138001441 138001473 -6281016 + AT_rich Low_complexity Low_complexity 1 32 0 1186 223 17 58 chr12 138001478 138001770 -6280719 + AluJo SINE Alu 3 282 -30 22 35 0 0 chr12 138001873 138001902 -6280587 + AT_rich Low_complexity Low_complexity 1 29 0 285 95 48 0 chr12 138002087 138002150 -6280339 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 495 178 30 104 chr12 138002296 138002431 -6280058 - LTR8A LTR ERV1 0 727 603 1005 177 16 16 chr12 138002453 138002639 -6279850 - MER61E LTR ERV1 -43 526 341 248 241 0 35 chr12 138002678 138002736 -6279753 - MER61E LTR ERV1 -397 172 117 * 341 238 0 89 chr12 138002712 138002813 -6279676 - MER61E LTR ERV1 -379 190 99 * 383 268 36 9 chr12 138002810 138002922 -6279567 - LTR25 LTR ERV1 -431 363 249 2380 168 59 29 chr12 138003078 138003566 -6278923 - LTR8A LTR ERV1 -191 536 34 3945 112 101 0 chr12 138003579 138004152 -6278337 + MER41B LTR ERV1 1 631 -4 952 249 64 57 chr12 138004160 138004211 -6278278 - MLT2C1 LTR ERVL 0 397 348 258 32 0 0 chr12 138004211 138004242 -6278247 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 952 249 64 57 chr12 138004242 138004544 -6277945 - MLT2C1 LTR ERVL -49 348 38 1347 225 46 14 chr12 138004544 138004895 -6277594 + MLT1A1 LTR MaLR 4 365 0 952 249 64 57 chr12 138004895 138004929 -6277560 - MLT2C1 LTR ERVL -359 38 6 2280 99 0 0 chr12 138005925 138006219 -6276270 + AluY SINE Alu 1 294 -17 300 289 125 90 chr12 138006232 138006544 -6275945 - L2 LINE L2 -13 3259 2937 585 265 78 43 chr12 138006731 138006961 -6275528 + MLT1H LTR MaLR 104 341 -208 25 0 0 0 chr12 138007109 138007134 -6275355 + AT_rich Low_complexity Low_complexity 1 25 0 3760 193 33 54 chr12 138008808 138009784 -6272705 - LTR5 LTR ERVK -14 955 1 960 281 30 13 chr12 138009888 138010191 -6272298 + MLT1I LTR MaLR 102 409 0 3632 184 37 61 chr12 138010957 138011761 -6270728 - LTR1 LTR ERV1 0 785 1 22 35 0 0 chr12 138012170 138012199 -6270290 + AT_rich Low_complexity Low_complexity 1 29 0 943 234 44 5 chr12 138012909 138013114 -6269375 - MER20 DNA MER1_type -1 218 6 3505 194 25 35 chr12 138013119 138013946 -6268543 + L1M2 LINE L1 4114 4932 -1214 751 133 17 28 chr12 138013951 138014132 -6268357 + GA-rich Low_complexity Low_complexity 2 180 0 451 184 26 13 chr12 138014153 138014305 -6268184 + GA-rich Low_complexity Low_complexity 4 157 0 1499 194 11 46 chr12 138014306 138014917 -6267572 + L1M2 LINE L1 4944 5641 -671 227 209 0 0 chr12 138015134 138015177 -6267312 - MLT1I LTR MaLR -8 401 359 754 131 0 0 chr12 138015182 138015281 -6267208 - AluSc SINE Alu -21 288 190 307 403 10 5 chr12 138015386 138015592 -6266897 - MLT1I LTR MaLR -155 254 48 26 30 0 0 chr12 138016391 138016424 -6266065 + AT_rich Low_complexity Low_complexity 1 33 0 287 373 65 16 chr12 138016520 138016705 -6265784 + LTR33 LTR ERVL 29 222 -299 489 268 33 27 chr12 138016761 138016944 -6265545 + LTR33 LTR ERVL 330 513 -8 2296 81 10 3 chr12 138017559 138017857 -6264632 - AluSg SINE Alu -10 300 1 8089 20 17 0 chr12 138018773 138019752 -6262737 - L1PA3 LINE L1 -5 6150 5170 727 135 0 68 chr12 138020070 138020203 -6262286 + AluSg/x SINE Alu 179 302 -8 22 0 0 0 chr12 138020279 138020301 -6262188 + AT_rich Low_complexity Low_complexity 1 22 0 210 357 98 7 chr12 138020925 138021068 -6261421 - L2 LINE L2 0 3272 3117 513 249 141 22 chr12 138021314 138021499 -6260990 + MIR SINE MIR 55 261 -1 423 222 14 7 chr12 138021763 138021907 -6260582 + CT-rich Low_complexity Low_complexity 1 145 0 384 277 34 8 chr12 138021909 138022028 -6260461 - MER58C DNA MER1_type -83 132 11 373 279 103 22 chr12 138022984 138023120 -6259369 - MER5B DNA MER1_type -5 173 27 1514 207 7 0 chr12 138023121 138023416 -6259073 + L1MA4 LINE L1 5978 6274 -26 730 247 0 13 chr12 138023445 138023599 -6258890 + FRAM SINE Alu 22 173 -3 633 170 14 14 chr12 138023602 138023749 -6258740 + GA-rich Low_complexity Low_complexity 2 148 0 253 223 179 27 chr12 138023791 138023903 -6258586 - MLT1I LTR MaLR -272 137 9 207 0 0 0 chr12 138024502 138024525 -6257964 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 513 304 166 35 chr12 138024816 138025273 -6257216 - LTR33 LTR ERVL 0 521 5 3640 154 13 5 chr12 138025351 138025947 -6256542 + L1PA15 LINE L1 5565 6165 0 184 322 73 44 chr12 138027122 138027327 -6255162 + L2 LINE L2 2312 2522 -792 3242 214 16 63 chr12 138027328 138028204 -6254285 + L1MA6 LINE L1 5466 6300 0 3067 87 8 2 chr12 138028449 138028842 -6253647 - L1PB1 LINE L1 -9 6142 5748 1073 181 15 5 chr12 138028911 138029115 -6253374 - MER84 LTR ERVI 0 507 302 1089 133 40 29 chr12 138029194 138029416 -6253073 - MER84 LTR ERVI -210 297 1 490 273 35 7 chr12 138029652 138029795 -6252694 + MIR SINE MIR 36 182 -80 2011 124 10 7 chr12 138029857 138030197 -6252292 - AluSg1 SINE Alu 0 309 1 362 281 198 8 chr12 138030608 138030729 -6251760 + MER5A DNA MER1_type 45 188 -1 268 320 125 8 chr12 138030904 138031032 -6251457 + MIR SINE MIR 49 191 -71 224 339 51 34 chr12 138031039 138031157 -6251332 - MER5A DNA MER1_type -20 169 50 390 279 97 26 chr12 138031607 138031850 -6250639 - L1MEc LINE L1 -5040 1556 1159 21 57 0 0 chr12 138031856 138031891 -6250598 + AT_rich Low_complexity Low_complexity 1 35 0 225 173 0 0 chr12 138031892 138031944 -6250545 + L1MCa LINE L1 1429 1480 -4946 240 197 15 45 chr12 138032269 138032335 -6250154 - L1MD3 LINE L1 -1318 6677 6614 214 156 44 0 chr12 138032404 138032449 -6250040 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 191 353 52 17 chr12 138032514 138032630 -6249859 - MIR SINE MIR -115 147 28 2454 128 8 22 chr12 138033880 138034248 -6248241 - THE1B LTR MaLR -1 363 1 12455 98 3 1 chr12 138034248 138035824 -6246665 - THE1B-int LTR MaLR 0 1580 1 2688 98 5 40 chr12 138035824 138036201 -6246288 - THE1B LTR MaLR 0 364 1 754 286 33 0 chr12 138036398 138036580 -6245909 + MER5A DNA MER1_type 2 189 0 4277 104 19 2 chr12 138036624 138037211 -6245278 + L1PA14 LINE L1 5565 6161 0 528 239 65 75 chr12 138037214 138037415 -6245074 - MER58A DNA MER1_type -25 199 1 272 339 8 42 chr12 138037466 138037584 -6244905 + L2 LINE L2 3175 3288 -25 1251 169 39 44 chr12 138038552 138038881 -6243608 + THE1C LTR MaLR 1 375 0 1087 243 24 62 chr12 138039003 138039340 -6243149 - MER63B DNA MER1_type -108 328 5 466 255 100 35 chr12 138040000 138040231 -6242258 - LTR33A LTR ERVL -147 376 131 505 367 0 6 chr12 138041076 138041234 -6241255 + MIR SINE MIR 6 162 -100 409 326 66 22 chr12 138041263 138041444 -6241045 + L2 LINE L2 2924 3112 -160 2134 129 0 16 chr12 138041470 138041773 -6240716 + AluSx SINE Alu 1 298 -14 5273 88 17 36 chr12 138041810 138042586 -6239903 - L1PA13 LINE L1 -12 6151 5391 284 336 36 27 chr12 138042623 138042733 -6239756 + L2 LINE L2 3137 3247 -25 1733 158 26 30 chr12 138043211 138043619 -6238870 + MLT2A2 LTR ERVL 17 309 -144 292 51 26 0 chr12 138043577 138043651 -6238838 - AluSp/q SINE Alu 0 322 248 * 434 269 91 29 chr12 138043883 138044192 -6238297 + MLT1J2 LTR MaLR 5 332 -118 1921 174 34 66 chr12 138044200 138044394 -6238095 - MLT2A2 LTR ERVL 0 554 355 2069 117 4 0 chr12 138044394 138044675 -6237814 + AluSq SINE Alu 5 286 -27 1921 174 34 66 chr12 138044675 138045071 -6237418 - MLT2A2 LTR ERVL -199 355 3 397 242 0 11 chr12 138045096 138045187 -6237302 + MLT1J1 LTR MaLR 357 446 0 4344 188 50 11 chr12 138046056 138046945 -6235544 - MER49 LTR ERV1 0 923 1 233 56 0 28 chr12 138047221 138047257 -6235232 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 1794 187 31 30 chr12 138047597 138048154 -6234335 + MLT2A2 LTR ERVL 1 554 0 2491 62 3 0 chr12 138050045 138050349 -6232140 - AluSp SINE Alu -8 305 1 1852 76 76 64 chr12 138051254 138051417 -6231072 + L1PB1 LINE L1 5446 5606 -545 2402 81 0 0 chr12 138051417 138051715 -6230774 + AluY SINE Alu 1 298 -13 1852 76 76 64 chr12 138051715 138051894 -6230595 + L1PB1 LINE L1 5606 5792 -359 393 206 0 0 chr12 138051898 138051990 -6230499 + (TA)n Simple_repeat Simple_repeat 2 93 0 2597 81 3 3 chr12 138052005 138052375 -6230114 + L1PB1 LINE L1 5782 6151 0 26 0 0 0 chr12 138052375 138052401 -6230088 + AT_rich Low_complexity Low_complexity 1 26 0 239 0 32 0 chr12 138052957 138052988 -6229501 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1927 127 47 0 chr12 138052991 138053141 -6229348 - AluSq SINE Alu -24 289 148 282 29 0 0 chr12 138053141 138053176 -6229313 + (TTTTA)n Simple_repeat Simple_repeat 4 38 0 1927 127 47 0 chr12 138053176 138053301 -6229188 - AluSq SINE Alu -165 148 1 559 311 34 6 chr12 138054801 138054978 -6227511 - MIR SINE MIR -37 225 44 481 288 52 34 chr12 138055167 138055400 -6227089 + MER110 LTR ERV1 215 451 -40 260 59 0 0 chr12 138055422 138055456 -6227033 - MADE1 DNA Mariner -45 35 2 213 94 0 0 chr12 138056681 138056713 -6225776 + (TC)n Simple_repeat Simple_repeat 2 33 0 576 252 0 0 chr12 138056892 138057242 -6225247 + (CA)n Simple_repeat Simple_repeat 1 350 0 1112 120 38 0 chr12 138057940 138058098 -6224391 - AluSg/x SINE Alu -12 300 137 1174 71 18 0 chr12 138058500 138058669 -6223820 + (GAAA)n Simple_repeat Simple_repeat 3 174 0 483 118 0 0 chr12 138058669 138058745 -6223744 + (GGGA)n Simple_repeat Simple_repeat 1 76 0 219 186 0 0 chr12 138058764 138058807 -6223682 + A-rich Low_complexity Low_complexity 3 45 0 214 339 68 0 chr12 138060105 138060223 -6222266 - MIR SINE MIR -64 198 73 1795 211 35 78 chr12 138061208 138061787 -6220702 + MLT2B3 LTR ERVL 1 554 0 181 302 207 17 chr12 138061927 138062043 -6220446 - MIR SINE MIR -12 250 113 232 301 107 19 chr12 138062132 138062235 -6220254 + MER5B DNA MER1_type 7 118 -60 266 322 105 65 chr12 138062333 138062905 -6219584 - L2 LINE L2 -571 2743 2149 327 170 0 0 chr12 138063253 138063306 -6219183 + U4 snRNA snRNA 1 53 -92 954 16 142 0 chr12 138063331 138063458 -6219031 - L1PA4 LINE L1 -3 6152 6008 577 183 29 0 chr12 138063458 138063562 -6218927 + U4 snRNA snRNA 38 144 -1 2465 60 7 0 chr12 138063906 138064207 -6218282 + AluY SINE Alu 1 303 -8 28 86 0 0 chr12 138064617 138064687 -6217802 + AT_rich Low_complexity Low_complexity 1 70 0 2380 58 3 7 chr12 138064830 138065140 -6217349 + AluY SINE Alu 1 309 -2 2313 108 14 0 chr12 138065351 138065647 -6216842 + AluSx SINE Alu 1 300 -12 375 243 0 27 chr12 138066165 138066276 -6216213 - MER63 DNA MER1_type -84 752 19 1449 166 114 12 chr12 138066445 138066777 -6215712 + MSTB2 LTR MaLR 92 457 0 213 328 31 0 chr12 138066777 138066841 -6215648 - MIR SINE MIR -189 73 8 919 198 37 70 chr12 138067231 138067474 -6215015 - L1MDa LINE L1 -6286 254 20 26 0 0 0 chr12 138067481 138067507 -6214982 + AT_rich Low_complexity Low_complexity 1 26 0 290 259 65 37 chr12 138067508 138067616 -6214873 - L2 LINE L2 -1093 2221 2111 1968 144 23 3 chr12 138067628 138067927 -6214562 + AluJo SINE Alu 1 305 -7 262 301 0 0 chr12 138068509 138068582 -6213907 - MIR3 SINE MIR -47 161 89 625 323 99 28 chr12 138068587 138069190 -6213299 + L2 LINE L2 2665 3309 -4 852 163 20 0 chr12 138069242 138069395 -6213094 + L1PB1 LINE L1 5996 6151 0 900 212 24 80 chr12 138069507 138069884 -6212605 - L1MC4 LINE L1 -1 8041 7686 2482 90 36 3 chr12 138069977 138070333 -6212156 - L1PB1 LINE L1 -2 6149 5782 333 118 0 0 chr12 138070333 138070384 -6212105 + (TG)n Simple_repeat Simple_repeat 2 52 0 234 0 0 0 chr12 138070385 138070411 -6212078 + (TA)n Simple_repeat Simple_repeat 1 26 0 616 84 42 0 chr12 138070411 138070506 -6211983 - L1PB1 LINE L1 -360 5791 5693 2660 239 61 73 chr12 138070516 138071214 -6211275 - L1MC4 LINE L1 -364 7678 7000 1921 157 0 0 chr12 138071214 138071508 -6210981 + AluSx SINE Alu 1 294 -18 2660 239 61 73 chr12 138071508 138072045 -6210444 - L1MC4 LINE L1 -1042 7000 6458 973 241 118 13 chr12 138072132 138072530 -6209959 + MLT1D LTR MaLR 64 503 -2 198 0 0 0 chr12 138072641 138072663 -6209826 + (CAGCT)n Simple_repeat Simple_repeat 3 24 0 399 266 24 16 chr12 138072788 138072912 -6209577 - MIR SINE MIR -110 152 28 317 258 93 0 chr12 138072991 138073088 -6209401 + MIR SINE MIR 138 243 -19 4611 140 15 12 chr12 138073548 138074399 -6208090 + L1PB3 LINE L1 5225 6077 -77 233 258 48 16 chr12 138074634 138074696 -6207793 + L2 LINE L2 3128 3191 -81 278 306 9 45 chr12 138075018 138075129 -6207360 - MIR SINE MIR -82 126 20 203 115 39 39 chr12 138075951 138076003 -6206486 + A-rich Low_complexity Low_complexity 2 53 0 304 320 20 0 chr12 138077604 138077704 -6204785 - L1MC4 LINE L1 -1327 6715 6614 281 228 0 22 chr12 138077735 138077827 -6204662 - L1MC4 LINE L1 -1339 6703 6614 236 267 0 22 chr12 138077755 138077845 -6204644 + L1MC4 LINE L1 6616 6703 -1339 * 552 261 93 37 chr12 138078599 138078665 -6203824 - MLT1F LTR MaLR 0 542 481 2067 129 38 0 chr12 138078665 138078952 -6203537 - AluSg SINE Alu -12 298 1 552 261 93 37 chr12 138078952 138079363 -6203126 - MLT1F LTR MaLR -61 481 11 1677 219 33 24 chr12 138079673 138080126 -6202363 + MLT1C LTR MaLR 11 467 0 324 162 30 81 chr12 138080665 138080764 -6201725 + L1MC4 LINE L1 6610 6703 -1339 190 143 0 71 chr12 138080764 138080820 -6201669 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 308 262 71 0 chr12 138080820 138080904 -6201585 - L1MC4 LINE L1 -1339 6703 6614 239 321 45 18 chr12 138081967 138082079 -6200410 + MIR3 SINE MIR 50 164 -44 360 264 139 53 chr12 138082159 138082367 -6200122 + Charlie8 DNA MER1_type 40 265 -2152 534 306 90 18 chr12 138082848 138083070 -6199419 - MIR SINE MIR 0 262 25 660 202 45 6 chr12 138083686 138083864 -6198625 + MER53 DNA DNA 2 186 -3 2167 101 0 38 chr12 138084746 138085062 -6197427 + AluSg SINE Alu 2 305 -5 657 286 40 36 chr12 138085077 138085406 -6197083 + L1MDa LINE L1 17 346 -6194 3082 239 47 14 chr12 138085622 138087077 -6195412 + L1MDa LINE L1 828 2318 -4222 201 129 0 0 chr12 138087081 138087112 -6195377 + (TG)n Simple_repeat Simple_repeat 1 31 0 414 57 0 0 chr12 138087232 138087285 -6195204 + (CA)n Simple_repeat Simple_repeat 2 54 0 609 236 58 0 chr12 138087285 138087527 -6194962 + L1MDa LINE L1 2339 2594 -3946 1049 186 5 42 chr12 138087529 138087744 -6194745 - MER6B DNA MER2_type -3 207 1 267 259 0 0 chr12 138087752 138087837 -6194652 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 356 273 13 13 chr12 138087960 138088110 -6194379 + (TA)n Simple_repeat Simple_repeat 2 151 0 1955 105 0 19 chr12 138089199 138089466 -6193023 - AluSq SINE Alu -11 302 41 231 157 0 0 chr12 138089961 138090012 -6192477 + GA-rich Low_complexity Low_complexity 2 52 0 198 0 0 0 chr12 138090084 138090106 -6192383 + (TG)n Simple_repeat Simple_repeat 2 23 0 2239 102 41 36 chr12 138090212 138090574 -6191915 + THE1B LTR MaLR 1 364 0 215 400 93 0 chr12 138091138 138091278 -6191211 + MIR SINE MIR 103 255 -7 2453 127 33 24 chr12 138091281 138091349 -6191140 - MSTA LTR MaLR 0 428 362 2069 114 20 27 chr12 138091349 138091646 -6190843 + AluSx SINE Alu 1 295 -17 2453 127 33 24 chr12 138091646 138092001 -6190488 - MSTA LTR MaLR -66 362 1 209 262 33 0 chr12 138092658 138092719 -6189770 - L2 LINE L2 -1 3271 3209 243 297 137 23 chr12 138093835 138094010 -6188479 - MER58A DNA MER1_type -29 195 1 449 381 41 4 chr12 138094127 138094371 -6188118 + MIR SINE MIR 10 262 0 350 317 0 0 chr12 138095319 138095420 -6187069 - MIR SINE MIR -23 239 139 2120 108 0 7 chr12 138095905 138096201 -6186288 + AluSq SINE Alu 5 298 -15 301 293 57 0 chr12 138096837 138096943 -6185546 + MIR SINE MIR 87 198 -64 287 143 29 57 chr12 138097135 138097205 -6185284 + HSMAR1 DNA Mariner 1 68 -1219 32 81 0 0 chr12 138097250 138097324 -6185165 + AT_rich Low_complexity Low_complexity 1 74 0 1235 260 17 20 chr12 138097651 138098001 -6184488 - MER63D DNA MER1_type -1 1059 711 230 279 0 0 chr12 138098021 138098082 -6184407 - MER63D DNA MER1_type -619 442 382 1327 193 22 7 chr12 138098082 138098356 -6184133 + L1MB7 LINE L1 5849 6126 -58 * 6698 45 1 0 chr12 138098354 138099149 -6183340 - L1PA5 LINE L1 -5 6149 5354 6523 60 5 2 chr12 138099148 138099996 -6182493 + L1PA5 LINE L1 4519 5368 -778 * 398 127 0 0 chr12 138099965 138100028 -6182461 + L1MB7 LINE L1 6114 6176 -8 * 289 104 78 17 chr12 138100475 138100590 -6181899 + (TA)n Simple_repeat Simple_repeat 1 122 0 232 285 19 19 chr12 138100695 138100806 -6181683 - MLT1C LTR MaLR -14 429 263 3247 142 70 16 chr12 138100938 138101437 -6181052 + MER1A DNA MER1_type 1 526 -1 31 26 0 0 chr12 138102176 138102214 -6180275 + AT_rich Low_complexity Low_complexity 1 38 0 667 269 108 11 chr12 138103477 138103745 -6178744 + MER113 DNA MER1_type? 206 499 -22 301 213 63 126 chr12 138105004 138105178 -6177311 + Charlie8 DNA MER1_type 2 164 -2253 424 289 42 30 chr12 138105458 138105624 -6176865 + MIR SINE MIR 16 183 -79 472 109 0 141 chr12 138106008 138106046 -6176443 + MADE1 DNA Mariner 1 43 -37 2414 86 0 3 chr12 138106046 138106360 -6176129 - AluSq SINE Alu 0 313 1 2055 134 0 0 chr12 138106362 138106660 -6175829 - AluSx SINE Alu -14 298 1 472 109 0 141 chr12 138106660 138106710 -6175779 + MADE1 DNA Mariner 44 79 -1 370 298 211 29 chr12 138106940 138107282 -6175207 - L2 LINE L2 -32 3281 2878 393 288 116 0 chr12 138107293 138107439 -6175050 - MIR SINE MIR -60 202 40 2115 117 0 0 chr12 138108535 138108840 -6173649 + AluSx SINE Alu 1 305 0 1976 141 0 16 chr12 138108947 138109260 -6173229 - AluSx SINE Alu -4 308 1 468 149 0 11 chr12 138109270 138109364 -6173125 - L1PA13 LINE L1 -4 6159 6067 180 0 0 0 chr12 138109989 138110009 -6172480 + (A)n Simple_repeat Simple_repeat 1 20 0 3231 132 89 109 chr12 138110423 138111224 -6171265 + LTR1 LTR ERV1 1 785 0 215 258 0 32 chr12 138112545 138112607 -6169882 + CT-rich Low_complexity Low_complexity 2 61 0 21 0 0 0 chr12 138114027 138114048 -6168441 + AT_rich Low_complexity Low_complexity 1 21 0 215 272 0 76 chr12 138114224 138114316 -6168173 - MIR SINE MIR 0 262 178 194 286 0 0 chr12 138114333 138114382 -6168107 - MIR SINE MIR -4 258 210 1953 164 0 0 chr12 138114397 138114689 -6167800 + AluSx SINE Alu 6 297 -15 1768 240 77 49 chr12 138114763 138115351 -6167138 - MLT1E2 LTR MaLR -1 625 22 669 316 37 5 chr12 138115939 138116154 -6166335 + MIR SINE MIR 16 237 -25 2240 104 0 0 chr12 138118142 138118471 -6164018 - AluSc SINE Alu 0 329 1 186 118 0 0 chr12 138118625 138118659 -6163830 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 1636 178 4 4 chr12 138119501 138119777 -6162712 - AluJb SINE Alu -36 276 1 21 36 0 0 chr12 138119859 138119887 -6162602 + AT_rich Low_complexity Low_complexity 1 28 0 681 314 74 53 chr12 138121251 138121630 -6160859 + L2 LINE L2 2927 3313 0 361 203 168 14 chr12 138122037 138122180 -6160309 + MIR SINE MIR 96 260 -2 2146 105 3 0 chr12 138122180 138122466 -6160023 - AluSq SINE Alu -26 287 1 200 267 0 0 chr12 138122466 138122511 -6159978 + (TTG)n Simple_repeat Simple_repeat 3 47 0 475 187 16 203 chr12 138122627 138122937 -6159552 + MER112 DNA MER1_type 2 253 -7 33 25 0 0 chr12 138123908 138123948 -6158541 + AT_rich Low_complexity Low_complexity 1 40 0 912 128 14 0 chr12 138124808 138124956 -6157533 + LTR10E LTR ERV1 1 150 -483 235 268 7 51 chr12 138125025 138125163 -6157326 + C-rich Low_complexity Low_complexity 3 134 0 2052 156 16 24 chr12 138125720 138126098 -6156391 + LTR10E LTR ERV1 216 590 -43 1065 248 45 77 chr12 138126146 138126549 -6155940 + MLT1D LTR MaLR 113 502 -3 249 159 0 0 chr12 138126680 138126724 -6155765 + CT-rich Low_complexity Low_complexity 2 45 0 325 213 50 0 chr12 138128469 138128549 -6153940 + CT-rich Low_complexity Low_complexity 2 85 0 510 190 17 22 chr12 138128565 138128744 -6153745 + CT-rich Low_complexity Low_complexity 2 179 0 710 269 61 33 chr12 138129183 138129428 -6153061 - MIR SINE MIR 0 262 11 2920 146 52 7 chr12 138130015 138130480 -6152009 - MER66B LTR ERV1 0 486 1 22 70 0 0 chr12 138130860 138130903 -6151586 + AT_rich Low_complexity Low_complexity 1 43 0 276 152 15 126 chr12 138130963 138131096 -6151393 + MER5B DNA MER1_type 1 175 -3 347 279 143 32 chr12 138131122 138131276 -6151213 - MER5A DNA MER1_type -1 188 18 267 297 79 10 chr12 138131293 138131394 -6151095 - MER5B DNA MER1_type -11 167 60 616 303 129 25 chr12 138131409 138131844 -6150645 - L1ME3A LINE L1 -8 6231 5752 522 270 81 62 chr12 138131942 138132201 -6150288 - L1ME3A LINE L1 -480 5759 5496 601 281 97 26 chr12 138132239 138132630 -6149859 - L1ME3A LINE L1 -1931 4284 3866 1716 134 4 40 chr12 138132632 138132909 -6149580 - AluSx SINE Alu -45 267 1 533 348 37 37 chr12 138133123 138133666 -6148823 - L1ME3A LINE L1 -4946 1450 908 191 91 0 45 chr12 138134035 138134079 -6148410 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2854 172 45 4 chr12 138134798 138135327 -6147162 + L1MC2 LINE L1 5769 6319 -25 210 240 0 40 chr12 138136004 138136054 -6146435 - MER5B DNA MER1_type 0 178 131 188 283 50 17 chr12 138136097 138136157 -6146332 + MER5A DNA MER1_type 128 189 0 315 320 87 10 chr12 138137118 138137221 -6145268 - L2 LINE L2 -10 3303 3193 200 231 39 0 chr12 138138022 138138074 -6144415 - MIR SINE MIR -103 159 106 1582 233 104 62 chr12 138139222 138139804 -6142685 - MER50 LTR ERV1 0 734 116 2164 109 0 0 chr12 138139804 138140130 -6142359 - AluSq SINE Alu 0 326 1 1582 233 104 62 chr12 138140130 138140238 -6142251 - MER50 LTR ERV1 -618 116 14 2155 119 0 3 chr12 138140558 138140852 -6141637 + AluSq SINE Alu 1 293 -20 288 0 0 0 chr12 138140853 138140885 -6141604 + (CA)n Simple_repeat Simple_repeat 1 32 0 351 264 167 60 chr12 138141106 138141556 -6140933 - L1ME4a LINE L1 -2 6119 5622 361 183 7 46 chr12 138141993 138142146 -6140343 + (TCTA)n Simple_repeat Simple_repeat 3 149 0 1647 180 7 14 chr12 138142151 138142445 -6140044 - AluJb SINE Alu -20 292 1 31 68 0 0 chr12 138142445 138142504 -6139985 + AT_rich Low_complexity Low_complexity 1 59 0 259 184 23 0 chr12 138142587 138142674 -6139815 + (TA)n Simple_repeat Simple_repeat 2 90 0 550 219 26 0 chr12 138142866 138142980 -6139509 - L1ME3A LINE L1 -155 6015 5899 311 275 190 0 chr12 138143021 138143163 -6139326 - L1ME3A LINE L1 -259 5911 5743 559 344 113 16 chr12 138143171 138143754 -6138735 - L2 LINE L2 -1 3312 2676 2409 63 3 10 chr12 138144358 138144658 -6137831 + AluY SINE Alu 1 298 -13 23 0 0 0 chr12 138145112 138145135 -6137354 + AT_rich Low_complexity Low_complexity 1 23 0 7506 19 2 0 chr12 138145344 138146190 -6136299 - L1PA2 LINE L1 -3 6152 5305 257 229 38 45 chr12 138146353 138146510 -6135979 + (CCGCT)n Simple_repeat Simple_repeat 4 159 0 * 352 291 0 30 chr12 138146403 138146537 -6135952 + C-rich Low_complexity Low_complexity 6 135 0 231 233 23 16 chr12 138146574 138146703 -6135786 + C-rich Low_complexity Low_complexity 3 132 0 186 118 0 0 chr12 138147492 138147526 -6134963 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 2241 108 30 0 chr12 138147684 138147980 -6134509 + AluSc SINE Alu 1 305 -4 2435 86 3 0 chr12 138148026 138148328 -6134161 + AluSp SINE Alu 1 303 -10 1074 202 35 73 chr12 138148594 138149083 -6133406 + MLT1B LTR MaLR 3 466 -1 1819 136 55 49 chr12 138149465 138149773 -6132716 - AluSx SINE Alu -2 310 1 185 281 37 37 chr12 138150058 138150140 -6132349 + L2 LINE L2 3232 3313 0 274 278 37 0 chr12 138150148 138150256 -6132233 - L1MEc LINE L1 -4537 1859 1748 698 179 6 0 chr12 138150679 138150847 -6131642 + (CA)n Simple_repeat Simple_repeat 2 170 0 825 168 0 0 chr12 138150867 138151046 -6131443 + (CA)n Simple_repeat Simple_repeat 1 179 0 791 173 4 0 chr12 138151082 138151313 -6131176 + (CA)n Simple_repeat Simple_repeat 1 232 0 475 333 52 0 chr12 138151473 138151704 -6130785 - LTR16C LTR ERVL -150 341 99 317 297 6 51 chr12 138151934 138152109 -6130380 + GA-rich Low_complexity Low_complexity 2 168 0 247 357 16 16 chr12 138152194 138152413 -6130076 + GA-rich Low_complexity Low_complexity 1 219 0 477 213 56 19 chr12 138152719 138152827 -6129662 - AluSg/x SINE Alu -5 304 193 27 62 0 0 chr12 138153535 138153583 -6128906 + AT_rich Low_complexity Low_complexity 1 48 0 2379 106 3 0 chr12 138153674 138153985 -6128504 - AluSp SINE Alu -1 312 1 22 42 0 0 chr12 138154513 138154537 -6127952 + AT_rich Low_complexity Low_complexity 1 24 0 297 100 0 0 chr12 138155196 138155236 -6127253 + (G)n Simple_repeat Simple_repeat 1 40 0 339 365 0 0 chr12 138155726 138155896 -6126593 + (CA)n Simple_repeat Simple_repeat 2 171 0 3391 142 3 25 chr12 138156969 138157569 -6124920 - L1P LINE L1 -947 5199 4613 321 200 0 110 chr12 138158316 138158390 -6124099 - MLT1D LTR MaLR -6 499 437 2169 130 3 0 chr12 138158390 138158689 -6123800 - AluSx SINE Alu -12 300 1 321 200 0 110 chr12 138158689 138158714 -6123775 - MLT1D LTR MaLR -68 437 411 21 57 0 0 chr12 138158763 138158798 -6123691 + GC_rich Low_complexity Low_complexity 1 35 0 325 202 22 60 chr12 138158832 138159015 -6123474 + G-rich Low_complexity Low_complexity 5 180 0 21 0 0 0 chr12 138159075 138159096 -6123393 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 138159197 138159221 -6123268 + GC_rich Low_complexity Low_complexity 1 24 0 1748 164 4 0 chr12 138160373 138160648 -6121841 + AluSx SINE Alu 1 276 -36 44170 31 23 1 chr12 138160922 138166466 -6116023 - L1P1 LINE L1 -488 5667 2 285 109 0 0 chr12 138166745 138166791 -6115698 + (TG)n Simple_repeat Simple_repeat 2 47 0 425 267 83 6 chr12 138166853 138167033 -6115456 + L1MC4a LINE L1 55 248 -6148 1060 280 94 63 chr12 138167076 138167706 -6114783 + L1MC4a LINE L1 355 964 -5432 2209 100 3 3 chr12 138167706 138168005 -6114484 + AluSc SINE Alu 1 299 -10 1060 280 94 63 chr12 138168005 138168032 -6114457 + L1MC4a LINE L1 964 989 -5407 2111 87 50 0 chr12 138168032 138168309 -6114180 + AluSc SINE Alu 1 291 -18 1060 280 94 63 chr12 138168309 138169079 -6113410 + L1MC4a LINE L1 989 1859 -4537 185 281 37 37 chr12 138169087 138169169 -6113320 - L2 LINE L2 0 3313 3232 1805 136 55 52 chr12 138169454 138169762 -6112727 + AluSx SINE Alu 1 309 -3 1128 205 35 58 chr12 138170144 138170628 -6111861 - MLT1B LTR MaLR -1 466 3 2435 86 3 0 chr12 138170894 138171196 -6111293 - AluSp SINE Alu -10 303 1 1829 171 33 3 chr12 138171242 138171541 -6110948 - AluJb SINE Alu -4 308 1 2229 121 3 0 chr12 138173227 138173533 -6108956 - AluY SINE Alu -4 307 1 352 322 118 9 chr12 138173578 138173789 -6108700 + L2 LINE L2 2660 2893 -421 1294 246 64 45 chr12 138174603 138175087 -6107402 - LTR55 LTR ERV -34 514 22 414 287 17 0 chr12 138175423 138175538 -6106951 + MER94 DNA DNA 18 134 0 2335 102 0 0 chr12 138175981 138176276 -6106213 - AluSg SINE Alu -15 295 1 1771 288 77 47 chr12 138176294 138178104 -6104385 + L1MC4a LINE L1 4092 5276 -939 2098 161 13 3 chr12 138178104 138178482 -6104007 + L1MB3 LINE L1 5801 6182 -1 1771 288 77 47 chr12 138178482 138178587 -6103902 + L1MC4a LINE L1 5276 5376 -839 2084 94 7 59 chr12 138178652 138178959 -6103530 - AluSp SINE Alu -22 291 1 1895 209 42 69 chr12 138178975 138179496 -6102993 - MLT2B3 LTR ERVL -46 508 2 285 263 26 79 chr12 138179586 138179738 -6102751 + L1MC4a LINE L1 6211 6354 -1523 276 299 9 19 chr12 138180463 138180570 -6101919 - MIR SINE MIR -71 191 86 22 0 0 0 chr12 138180770 138180792 -6101697 + AT_rich Low_complexity Low_complexity 1 22 0 358 171 7 164 chr12 138181733 138181873 -6100616 + MER102b DNA MER1_type 210 327 -14 210 306 50 16 chr12 138182376 138182497 -6099992 - L2 LINE L2 -565 2749 2625 1302 227 89 54 chr12 138182501 138182985 -6099504 - MLT1D LTR MaLR -2 503 3 774 309 92 31 chr12 138183313 138183727 -6098762 - MLT1K LTR MaLR -148 440 2 183 242 0 0 chr12 138184610 138184672 -6097817 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 969 187 19 14 chr12 138184696 138184905 -6097584 + Tigger2 DNA MER2_type 1 210 -2508 836 194 19 19 chr12 138184904 138185059 -6097430 + Tigger2 DNA MER2_type 2564 2718 0 * 532 267 55 54 chr12 138185346 138185831 -6096658 + MLT1G LTR MaLR 32 590 0 606 313 31 0 chr12 138186397 138186592 -6095897 + MIR SINE MIR 36 236 -26 358 364 62 19 chr12 138186841 138187212 -6095277 - L1ME LINE L1 -454 5667 5281 603 250 81 0 chr12 138188048 138188208 -6094281 + MLT1E2 LTR MaLR 454 626 0 1987 205 47 11 chr12 138188398 138188842 -6093647 + L1MC3 LINE L1 6694 7153 -632 193 245 61 31 chr12 138189056 138189154 -6093335 - MIR SINE MIR -92 170 70 278 247 22 22 chr12 138189358 138189447 -6093042 + G-rich Low_complexity Low_complexity 6 94 0 269 215 15 0 chr12 138189575 138189640 -6092849 - LTR52 LTR ERVL -355 66 1 195 269 0 0 chr12 138189845 138189897 -6092592 + MIR SINE MIR 141 192 -70 343 292 11 0 chr12 138190174 138190263 -6092226 - L2 LINE L2 -36 3277 3188 1338 201 72 105 chr12 138190304 138190761 -6091728 - MLT1D LTR MaLR -45 460 19 2119 153 14 70 chr12 138190903 138191134 -6091355 - MLT1B LTR MaLR 0 390 191 1817 155 26 16 chr12 138191134 138191443 -6091046 - AluSx SINE Alu 0 312 1 2119 153 14 70 chr12 138191443 138191624 -6090865 - MLT1B LTR MaLR -199 191 1 227 269 108 32 chr12 138191672 138191765 -6090724 - Charlie8 DNA MER1_type -2186 231 132 231 313 53 8 chr12 138192111 138192242 -6090247 + L2 LINE L2 3136 3272 0 2275 108 0 0 chr12 138193735 138194030 -6088459 + AluSc SINE Alu 2 296 -13 306 73 0 0 chr12 138194459 138194500 -6087989 + (GA)n Simple_repeat Simple_repeat 2 42 0 1968 151 3 0 chr12 138194662 138194953 -6087536 - AluSx SINE Alu -20 292 1 426 309 103 29 chr12 138195655 138195859 -6086630 - MLT1K LTR MaLR -287 301 83 587 319 50 30 chr12 138196041 138196480 -6086009 - L1ME LINE L1 -354 5767 5320 22 35 0 0 chr12 138196547 138196576 -6085913 + AT_rich Low_complexity Low_complexity 1 29 0 233 337 42 0 chr12 138197247 138197342 -6085147 + L2 LINE L2 3156 3254 -18 1895 106 8 11 chr12 138197386 138197671 -6084818 - AluSx SINE Alu 0 305 22 239 275 0 14 chr12 138198077 138198146 -6084343 - MLT1J2 LTR MaLR -14 436 369 1155 209 92 21 chr12 138198698 138199024 -6083465 - L1MC3 LINE L1 -9 7776 7428 1007 146 0 0 chr12 138199017 138199182 -6083307 - L1P LINE L1 -1359 4787 4623 * 3762 81 0 6 chr12 138199182 138199687 -6082802 + L1PA13 LINE L1 5661 6163 0 4551 223 76 17 chr12 138199708 138200953 -6081536 - L1MC3 LINE L1 -354 7431 6113 908 239 43 22 chr12 138200948 138201293 -6081196 - L1MCa LINE L1 -3735 2691 2365 * 26864 135 13 20 chr12 138201339 138206567 -6075922 - L1PA8A LINE L1 0 6446 1219 234 62 0 0 chr12 138206567 138206599 -6075890 + (TTG)n Simple_repeat Simple_repeat 2 33 0 26864 135 13 20 chr12 138206599 138207810 -6074679 - L1PA8A LINE L1 -5227 1219 1 871 214 116 13 chr12 138207810 138208098 -6074391 - L1MCa LINE L1 -4105 2321 2043 225 203 0 17 chr12 138208135 138208194 -6074295 - L1MCa LINE L1 -4520 1906 1849 601 274 34 6 chr12 138208763 138208938 -6073551 + MLT1I LTR MaLR 1 180 -229 248 313 118 43 chr12 138209067 138209278 -6073211 + L2 LINE L2 3061 3287 -26 246 32 0 0 chr12 138209540 138209571 -6072918 + (TC)n Simple_repeat Simple_repeat 2 32 0 264 127 0 0 chr12 138209571 138209626 -6072863 + (TA)n Simple_repeat Simple_repeat 2 56 0 1541 150 15 100 chr12 138210945 138211079 -6071410 + AluJo SINE Alu 1 145 -167 375 23 0 0 chr12 138211079 138211123 -6071366 + (TA)n Simple_repeat Simple_repeat 1 44 0 1541 150 15 100 chr12 138211123 138211328 -6071161 + AluJo SINE Alu 145 311 -1 289 306 61 41 chr12 138211505 138211701 -6070788 + L2 LINE L2 1463 1662 -1652 1121 233 127 41 chr12 138211704 138212236 -6070253 - LTR34 LTR ERV1 -7 865 109 487 165 19 19 chr12 138212268 138212371 -6070118 - MER4A LTR ERV1 -561 103 1 474 296 74 74 chr12 138212402 138212780 -6069709 + MER57A LTR ERV1 16 393 -10 21 36 0 0 chr12 138213097 138213125 -6069364 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 138214106 138214128 -6068361 + AT_rich Low_complexity Low_complexity 1 22 0 568 320 138 34 chr12 138214403 138214728 -6067761 + LTR33 LTR ERVL 43 401 -120 2941 141 79 14 chr12 138215266 138215761 -6066728 - MER1A DNA MER1_type 0 527 1 185 62 0 31 chr12 138217905 138217937 -6064552 + (TA)n Simple_repeat Simple_repeat 2 32 0 315 113 0 0 chr12 138218702 138218755 -6063734 + (CA)n Simple_repeat Simple_repeat 2 54 0 365 313 82 29 chr12 138218876 138219084 -6063405 + MIR SINE MIR 43 261 -1 322 269 18 84 chr12 138219128 138219295 -6063194 - L1ME3 LINE L1 -2 6160 6005 253 285 89 58 chr12 138219351 138219677 -6062812 - L1ME3 LINE L1 -215 5951 5616 365 338 76 4 chr12 138221571 138221796 -6060693 + MIR SINE MIR 2 242 -20 2331 107 3 0 chr12 138222313 138222622 -6059867 + AluSg SINE Alu 1 310 0 1617 99 5 0 chr12 138222723 138222924 -6059565 - AluSq SINE Alu -111 202 1 613 285 8 32 chr12 138223004 138223293 -6059196 - L1MC5 LINE L1 -1010 7032 6677 1086 266 60 25 chr12 138223309 138223828 -6058661 - L1ME3 LINE L1 -1376 4770 4234 575 295 51 34 chr12 138223875 138224112 -6058377 - MLT1I LTR MaLR -137 272 32 213 310 55 69 chr12 138224315 138224460 -6058029 - MER5B DNA MER1_type -34 144 2 539 292 151 25 chr12 138225400 138225797 -6056692 - MLT1K LTR MaLR -60 528 82 198 0 0 0 chr12 138225819 138225841 -6056648 + (A)n Simple_repeat Simple_repeat 1 22 0 217 154 0 26 chr12 138226097 138226136 -6056353 + T-rich Low_complexity Low_complexity 2 39 0 701 229 40 54 chr12 138226443 138226620 -6055869 - LTR8A LTR ERV1 0 727 554 1159 99 49 0 chr12 138226620 138226782 -6055707 + MER51B LTR ERV1 1 170 -207 1015 97 84 0 chr12 138226779 138226933 -6055556 - MER51B LTR ERV1 -37 340 174 * 9405 136 18 19 chr12 138226958 138228460 -6054029 + MER51-int LTR ERV1 1 1500 -6316 232 182 0 0 chr12 138228475 138228519 -6053970 + MER4A LTR ERV1 55 98 -566 644 180 52 65 chr12 138228528 138228722 -6053767 + MER4A LTR ERV1 281 530 -134 8264 112 80 3 chr12 138228724 138230127 -6052362 + MER51-int LTR ERV1 1805 3315 -4501 1385 182 58 96 chr12 138230129 138230597 -6051892 - LTR7 LTR ERV1 0 450 1 2488 159 0 61 chr12 138230678 138231156 -6051333 - HERVH LTR ERV1 -92 7621 7173 282 68 0 136 chr12 138231157 138231216 -6051273 - HERVH LTR ERV1 0 7713 7663 * 2703 174 2 0 chr12 138231210 138231669 -6050820 - HERVH LTR ERV1 -765 6948 6489 694 150 0 0 chr12 138231669 138231782 -6050707 - HERVH LTR ERV1 -3184 4529 4417 * 2409 163 3 2 chr12 138231763 138232178 -6050311 - HERVH LTR ERV1 -2850 4135 3958 242 71 0 24 chr12 138232337 138232379 -6050110 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 29 0 0 0 chr12 138232598 138232627 -6049862 + GC_rich Low_complexity Low_complexity 1 29 0 329 154 174 7 chr12 138232659 138232808 -6049681 + (ACCG)n Simple_repeat Simple_repeat 4 177 0 950 179 6 0 chr12 138233144 138233312 -6049177 - AluY SINE Alu -6 305 137 2170 128 0 3 chr12 138233316 138233622 -6048867 - AluSx SINE Alu -6 306 2 1673 111 4 0 chr12 138234398 138234624 -6047865 + AluSx SINE Alu 55 281 -31 348 24 0 0 chr12 138234626 138234667 -6047822 + (CA)n Simple_repeat Simple_repeat 2 42 0 2081 87 4 0 chr12 138236012 138236277 -6046212 + AluSp SINE Alu 30 295 -18 414 317 86 35 chr12 138237164 138237454 -6045035 - LTR16C LTR ERVL 0 491 187 365 279 87 27 chr12 138237673 138237856 -6044633 + L2 LINE L2 2916 3109 -204 360 0 0 0 chr12 138237884 138237924 -6044565 + (TG)n Simple_repeat Simple_repeat 1 40 0 2200 97 10 13 chr12 138238197 138238497 -6043992 - AluSq SINE Alu -14 299 1 310 287 42 30 chr12 138238537 138238704 -6043785 - L2 LINE L2 -348 2966 2798 573 105 0 0 chr12 138238725 138238811 -6043678 + Alu SINE Alu 226 311 0 253 319 0 0 chr12 138238819 138238891 -6043598 + MER2 DNA MER2_type 6 77 -268 197 200 0 40 chr12 138238971 138239021 -6043468 - L2 LINE L2 -522 2792 2745 2658 190 20 21 chr12 138239092 138239603 -6042886 + MLT2B2 LTR ERVL 3 512 -3 616 258 57 4 chr12 138239604 138239852 -6042637 - L2 LINE L2 -652 2662 2402 2428 105 129 5 chr12 138240394 138240775 -6041714 - MSTA LTR MaLR 0 428 1 209 327 37 78 chr12 138240851 138241068 -6041421 + L2 LINE L2 2685 2892 -422 459 0 0 0 chr12 138241938 138241989 -6040500 + (TA)n Simple_repeat Simple_repeat 2 52 0 1738 178 3 7 chr12 138241990 138242277 -6040212 - AluSx SINE Alu -26 286 1 233 255 21 0 chr12 138242477 138242524 -6039965 + AluJ/monomer SINE Alu 1 48 -254 1380 159 11 10 chr12 138242624 138242982 -6039507 - HERVH LTR ERV1 -2202 4452 3806 * 7244 151 1 12 chr12 138242976 138244180 -6038309 - HERVH LTR ERV1 -4126 3587 2397 646 265 53 6 chr12 138244319 138244489 -6038000 - LTR28 LTR ERV1 -842 178 1 3275 138 9 52 chr12 138245326 138245905 -6036584 + LTR8A LTR ERV1 1 554 -173 2247 122 65 0 chr12 138245908 138246262 -6036227 - MER51B LTR ERV1 0 377 1 8093 135 42 27 chr12 138246263 138247067 -6035422 - MER51B-int LTR ERV1 0 7816 7025 3888 67 20 8 chr12 138247067 138247572 -6034917 - LTR10D LTR ERV1 -2 511 1 8093 135 42 27 chr12 138247572 138248707 -6033782 - MER51B-int LTR ERV1 -791 7025 5620 8491 51 1 1 chr12 138248767 138249736 -6032753 - LTR5 LTR ERVK 0 969 1 1656 227 87 62 chr12 138249749 138250180 -6032309 - MER51B-int LTR ERV1 -2526 5011 2208 * 1825 205 56 25 chr12 138250157 138250623 -6031866 - MER51B-int LTR ERV1 -3242 2809 1518 1546 174 55 98 chr12 138250623 138251093 -6031396 + LTR7 LTR ERV1 1 450 0 11277 205 18 35 chr12 138251093 138254680 -6027809 + HERVH LTR ERV1 1 3499 -3445 54 49 0 0 chr12 138254821 138254903 -6027586 + GC_rich Low_complexity Low_complexity 1 82 0 1248 213 0 35 chr12 138255148 138255426 -6027063 + AluJo SINE Alu 38 306 0 587 162 12 22 chr12 138255765 138255886 -6026603 + LTR10E LTR ERV1 407 600 0 185 363 76 17 chr12 138256069 138256306 -6026183 + L2 LINE L2 2600 2850 -464 657 313 50 10 chr12 138256373 138256670 -6025819 - LTR16C LTR ERVL -6 485 177 277 202 83 24 chr12 138257123 138257207 -6025282 - MER53 DNA DNA 0 189 101 1850 98 4 8 chr12 138257695 138257951 -6024538 + AluSp SINE Alu 48 302 -11 23 33 0 0 chr12 138258316 138258346 -6024143 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr12 138258372 138258404 -6024085 + AT_rich Low_complexity Low_complexity 1 32 0 1686 150 0 55 chr12 138258405 138258562 -6023927 - AluJo SINE Alu -22 290 157 2123 120 0 13 chr12 138258562 138258862 -6023627 - AluSc SINE Alu -13 296 1 1686 150 0 55 chr12 138258862 138259011 -6023478 - AluJo SINE Alu -155 157 1 1711 181 17 0 chr12 138259016 138259315 -6023174 - L1MC1 LINE L1 -37 6296 5993 371 277 72 36 chr12 138259812 138259978 -6022511 - MIR SINE MIR -48 214 43 2356 104 0 0 chr12 138260234 138260542 -6021947 - AluSp SINE Alu -5 308 1 2095 169 42 21 chr12 138260849 138261380 -6021109 - MLT2A2 LTR ERVL 0 554 3 1986 92 8 0 chr12 138262201 138262462 -6020027 - AluSx SINE Alu -32 280 18 27 29 0 0 chr12 138262674 138262708 -6019781 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr12 138262808 138262835 -6019654 + AT_rich Low_complexity Low_complexity 1 27 0 21 82 0 0 chr12 138262916 138262965 -6019524 + AT_rich Low_complexity Low_complexity 1 49 0 2591 239 88 111 chr12 138263212 138263686 -6018803 + L1M4 LINE L1 2555 3038 -3108 1847 169 3 16 chr12 138263686 138263994 -6018495 - AluJo SINE Alu 0 312 9 2591 239 88 111 chr12 138263994 138264472 -6018017 + L1M4 LINE L1 3038 3525 -2621 2136 124 3 0 chr12 138264472 138264770 -6017719 + AluSx SINE Alu 1 299 -13 2591 239 88 111 chr12 138264770 138265770 -6016719 + L1M4 LINE L1 3525 4465 -1681 1647 218 67 29 chr12 138265953 138266399 -6016090 - MLT1C LTR MaLR -4 463 1 267 314 17 64 chr12 138266458 138266630 -6015859 + MIR SINE MIR 28 191 -71 370 338 59 30 chr12 138267022 138267478 -6015011 + L2 LINE L2 2743 3208 -64 261 248 20 20 chr12 138267721 138267822 -6014667 + (TA)n Simple_repeat Simple_repeat 1 101 0 737 296 92 46 chr12 138268779 138269256 -6013233 - MLT1L LTR MaLR -10 605 107 198 315 77 31 chr12 138272001 138272131 -6010358 + MIR3 SINE MIR 48 183 -25 1043 213 40 0 chr12 138272176 138272378 -6010111 - MER20 DNA MER1_type -2 217 8 1806 250 62 18 chr12 138272496 138273063 -6009426 + MER76 LTR ERV 56 647 -41 235 216 20 0 chr12 138273125 138273176 -6009313 + CT-rich Low_complexity Low_complexity 1 52 0 1922 214 34 14 chr12 138273860 138274355 -6008134 + L1 LINE L1 3178 3682 -2464 5715 134 23 4 chr12 138274357 138275284 -6007205 + L1PA16 LINE L1 5222 6166 0 235 275 175 21 chr12 138275293 138275337 -6007152 + Charlie8 DNA MER1_type 61 97 -2320 2232 112 0 0 chr12 138275337 138275633 -6006856 + AluY SINE Alu 1 296 -15 235 275 175 21 chr12 138275633 138275777 -6006712 + Charlie8 DNA MER1_type 97 278 -2139 386 304 196 8 chr12 138276337 138276865 -6005624 + L2 LINE L2 2457 3075 -238 2077 129 7 10 chr12 138276992 138277319 -6005170 - AluSx SINE Alu 0 312 1 285 296 122 0 chr12 138277384 138277499 -6004990 + L2 LINE L2 3185 3313 0 869 198 31 19 chr12 138277536 138277698 -6004791 - AluJo SINE Alu -1 301 138 2435 144 28 3 chr12 138277703 138278058 -6004431 - THE1B LTR MaLR 0 364 1 878 160 15 0 chr12 138278062 138278193 -6004296 - AluJo SINE Alu -169 133 1 447 253 102 86 chr12 138278364 138278668 -6003821 + MLT1I LTR MaLR 98 406 -3 204 97 0 0 chr12 138279308 138279339 -6003150 + (TG)n Simple_repeat Simple_repeat 2 32 0 512 204 62 18 chr12 138279638 138279751 -6002738 - AluSg/x SINE Alu -7 302 185 27 62 0 0 chr12 138280452 138280500 -6001989 + AT_rich Low_complexity Low_complexity 1 48 0 2376 104 3 0 chr12 138280591 138280900 -6001589 - AluSp SINE Alu -3 310 1 29 28 0 0 chr12 138281418 138281454 -6001035 + AT_rich Low_complexity Low_complexity 1 36 0 503 303 84 0 chr12 138281549 138281704 -6000785 + MLT1J LTR MaLR 32 199 -312 2196 145 124 21 chr12 138282350 138282736 -5999753 - MSTA LTR MaLR 0 428 3 1995 98 0 0 chr12 138283798 138284053 -5998436 - AluSg SINE Alu -7 303 49 2764 193 28 56 chr12 138284381 138284950 -5997539 - MLT2B3 LTR ERVL 0 554 2 258 337 61 10 chr12 138285338 138285436 -5997053 + MIR SINE MIR 43 145 -117 646 324 23 0 chr12 138285600 138285819 -5996670 - MIR SINE MIR -21 241 18 251 253 38 13 chr12 138286085 138286164 -5996325 + MLT1K LTR MaLR 463 543 -45 25 31 0 0 chr12 138286361 138286393 -5996096 + AT_rich Low_complexity Low_complexity 1 32 0 1546 285 39 16 chr12 138286446 138287208 -5995281 - L1M4 LINE L1 -2962 3184 2405 * 3421 220 71 12 chr12 138287203 138287361 -5995128 + L1MB8 LINE L1 4869 5016 -1162 2256 112 3 0 chr12 138287361 138287665 -5994824 - AluSp SINE Alu -8 305 1 3421 220 71 12 chr12 138287665 138288729 -5993760 + L1MB8 LINE L1 5016 6162 -16 442 254 72 22 chr12 138288746 138288884 -5993605 + LTR16C LTR ERVL 344 488 -3 21 0 0 0 chr12 138289147 138289168 -5993321 + AT_rich Low_complexity Low_complexity 1 21 0 333 47 0 0 chr12 138289683 138289726 -5992763 + (CA)n Simple_repeat Simple_repeat 1 43 0 2083 137 67 20 chr12 138290865 138291223 -5991266 - THE1C LTR MaLR 0 375 1 1101 279 34 34 chr12 138291421 138291730 -5990759 - MLT1D LTR MaLR -77 428 117 1878 125 3 30 chr12 138291730 138292026 -5990463 - AluSx SINE Alu -9 303 16 1101 279 34 34 chr12 138292026 138292124 -5990365 - MLT1D LTR MaLR -387 118 21 403 296 96 18 chr12 138292232 138292452 -5990037 + LTR16C LTR ERVL 255 491 0 303 261 117 36 chr12 138294105 138294216 -5988273 - L2 LINE L2 -2 3311 3192 1687 72 103 23 chr12 138294678 138294941 -5987548 - L1MA5A LINE L1 -5 6292 6009 231 291 0 0 chr12 138296238 138296293 -5986196 + GA-rich Low_complexity Low_complexity 1 55 0 354 231 56 9 chr12 138296580 138296688 -5985801 - L1MA9 LINE L1 -46 6266 6154 4315 71 186 0 chr12 138296773 138297352 -5985137 - LTR12 LTR ERV1 -1 687 1 337 294 34 25 chr12 138298048 138298167 -5984322 + HAL1 LINE L1 203 322 -2185 1063 272 46 48 chr12 138298529 138299069 -5983420 + LTR55 LTR ERV 9 547 -1 223 386 41 35 chr12 138299942 138300087 -5982402 + L2 LINE L2 3125 3270 -2 459 254 36 29 chr12 138300151 138300289 -5982200 - MER91C DNA MER1_type -1 139 1 3872 173 62 0 chr12 138300880 138301592 -5980897 - L1PB4 LINE L1 0 6156 5401 353 359 0 0 chr12 138301812 138301982 -5980507 + (CA)n Simple_repeat Simple_repeat 2 171 0 216 67 0 0 chr12 138303589 138303619 -5978870 + (CA)n Simple_repeat Simple_repeat 1 30 0 251 260 14 14 chr12 138303824 138303897 -5978592 + (CA)n Simple_repeat Simple_repeat 2 74 0 24 67 0 0 chr12 138304246 138304291 -5978198 + AT_rich Low_complexity Low_complexity 1 45 0 2372 113 0 0 chr12 138304414 138304723 -5977766 - AluSc SINE Alu 0 309 1 604 227 48 142 chr12 138304832 138305068 -5977421 + MLT1L LTR MaLR 108 403 -203 261 348 98 25 chr12 138306288 138306524 -5975965 + MLT1K LTR MaLR 224 476 -112 269 132 0 19 chr12 138306726 138306779 -5975710 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 264 294 116 0 chr12 138307507 138307653 -5974836 - MER102b DNA MER1_type 0 341 179 1074 209 54 74 chr12 138307676 138308162 -5974327 - MLT1E2 LTR MaLR 0 505 51 243 269 111 19 chr12 138308448 138308556 -5973933 - MLT1J2 LTR MaLR -46 404 287 222 118 0 0 chr12 138308560 138308594 -5973895 + (TA)n Simple_repeat Simple_repeat 1 34 0 209 261 15 31 chr12 138308614 138308679 -5973810 + L2 LINE L2 3229 3292 -21 254 224 61 51 chr12 138308776 138308874 -5973615 - MER102b DNA MER1_type -177 164 66 577 209 13 44 chr12 138309341 138309381 -5973108 + MER68 LTR ERV1 1 41 -521 4812 125 0 48 chr12 138309381 138310107 -5972382 + LTR8 LTR ERV1 1 691 0 577 209 13 44 chr12 138310107 138310224 -5972265 + MER68 LTR ERV1 41 153 -409 595 209 17 0 chr12 138310237 138310352 -5972137 + LTR1B LTR ERV1 1 117 -709 450 200 0 0 chr12 138310475 138310555 -5971934 + MER68 LTR ERV1 178 257 -305 1590 194 90 94 chr12 138310558 138311239 -5971250 + LTR1B LTR ERV1 116 981 -39 1403 199 28 111 chr12 138311322 138311720 -5970769 + MER68 LTR ERV1 178 542 -20 956 294 45 34 chr12 138311842 138312287 -5970202 + MLT1J2 LTR MaLR 1 450 0 329 372 98 5 chr12 138313192 138313407 -5969082 + MIR SINE MIR 12 246 -16 622 91 0 0 chr12 138314073 138314150 -5968339 - AluSc SINE Alu -222 87 11 1583 82 0 43 chr12 138314150 138314381 -5968108 + AluSg/x SINE Alu 90 310 0 448 333 52 0 chr12 138314735 138314966 -5967523 + LTR16C LTR ERVL 99 341 -150 800 182 3 0 chr12 138315126 138315754 -5966735 + (TG)n Simple_repeat Simple_repeat 1 630 0 181 352 74 0 chr12 138316113 138316221 -5966268 - MIR SINE MIR -101 161 46 279 297 0 0 chr12 138316652 138316716 -5965773 - MER91A DNA MER1_type -46 150 87 298 254 0 0 chr12 138318403 138318466 -5964023 - L3 LINE CR1 -123 1454 1392 24 0 0 0 chr12 138318706 138318730 -5963759 + AT_rich Low_complexity Low_complexity 1 24 0 183 42 0 0 chr12 138319181 138319205 -5963284 + (TG)n Simple_repeat Simple_repeat 2 25 0 369 270 69 17 chr12 138319346 138319520 -5962969 - MIR SINE MIR -8 254 72 347 280 143 11 chr12 138319575 138319764 -5962725 - MER102b DNA MER1_type 0 341 128 193 150 0 33 chr12 138319814 138319874 -5962615 + (GAAAA)n Simple_repeat Simple_repeat 2 59 0 256 333 19 0 chr12 138319960 138320065 -5962424 + L2 LINE L2 3166 3272 0 233 185 92 0 chr12 138320762 138320827 -5961662 - Charlie8 DNA MER1_type -991 1426 1356 352 318 40 6 chr12 138321152 138321325 -5961164 - Charlie8 DNA MER1_type -2182 235 57 340 149 117 11 chr12 138321925 138322019 -5960470 + AluSp SINE Alu 15 118 -185 269 132 0 19 chr12 138322852 138322905 -5959584 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 264 294 116 0 chr12 138323633 138323779 -5958710 - MER102a DNA MER1_type 0 330 168 1074 209 54 74 chr12 138323802 138324288 -5958201 - MLT1E2 LTR MaLR 0 505 51 254 259 111 19 chr12 138324574 138324682 -5957807 - MLT1J2 LTR MaLR -46 404 287 222 118 0 0 chr12 138324686 138324720 -5957769 + (TA)n Simple_repeat Simple_repeat 1 34 0 209 261 15 31 chr12 138324739 138324804 -5957685 + L2 LINE L2 3229 3292 -21 254 224 61 51 chr12 138324901 138324999 -5957490 - MER102a DNA MER1_type -166 164 66 577 209 13 44 chr12 138325466 138325506 -5956983 + MER68 LTR ERV1 1 41 -521 4761 128 0 48 chr12 138325506 138326232 -5956257 + LTR8 LTR ERV1 1 691 0 577 209 13 44 chr12 138326232 138326349 -5956140 + MER68 LTR ERV1 41 153 -409 595 209 17 0 chr12 138326362 138326477 -5956012 + LTR1B LTR ERV1 1 117 -709 450 200 0 0 chr12 138326600 138326680 -5955809 + MER68 LTR ERV1 178 257 -305 1617 194 88 93 chr12 138326683 138327365 -5955124 + LTR1B LTR ERV1 116 981 -39 1403 199 28 111 chr12 138327448 138327846 -5954643 + MER68 LTR ERV1 178 542 -20 956 294 45 34 chr12 138327968 138328413 -5954076 + MLT1J2 LTR MaLR 1 450 0 329 372 98 5 chr12 138329318 138329533 -5952956 + MIR SINE MIR 12 246 -16 622 91 0 0 chr12 138330199 138330276 -5952213 - AluSc SINE Alu -222 87 11 1583 82 0 43 chr12 138330276 138330507 -5951982 + AluSg/x SINE Alu 90 310 0 448 333 52 0 chr12 138330861 138331092 -5951397 + LTR16C LTR ERVL 99 341 -150 800 182 3 0 chr12 138331252 138331880 -5950609 + (TG)n Simple_repeat Simple_repeat 1 630 0 181 352 74 0 chr12 138332239 138332347 -5950142 - MIR SINE MIR -101 161 46 279 297 0 0 chr12 138332778 138332842 -5949647 - MER91A DNA MER1_type -46 150 87 298 254 0 0 chr12 138334529 138334592 -5947897 - L3 LINE CR1 -123 1454 1392 24 0 0 0 chr12 138334832 138334856 -5947633 + AT_rich Low_complexity Low_complexity 1 24 0 183 42 0 0 chr12 138335306 138335330 -5947159 + (TG)n Simple_repeat Simple_repeat 2 25 0 369 270 69 17 chr12 138335471 138335645 -5946844 - MIR SINE MIR -8 254 72 440 293 122 9 chr12 138335700 138335922 -5946567 - MER102b DNA MER1_type 0 341 95 220 143 0 32 chr12 138335936 138335999 -5946490 + (GAAAA)n Simple_repeat Simple_repeat 5 65 0 256 333 19 0 chr12 138336085 138336190 -5946299 + L2 LINE L2 3166 3272 0 233 185 92 0 chr12 138336887 138336952 -5945537 - Charlie8 DNA MER1_type -991 1426 1356 352 318 40 6 chr12 138337277 138337450 -5945039 - Charlie8 DNA MER1_type -2171 246 68 1781 135 10 20 chr12 138338049 138338173 -5944316 + AluSq SINE Alu 7 131 -182 180 0 0 0 chr12 138338173 138338193 -5944296 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1781 135 10 20 chr12 138338193 138338365 -5944124 + AluSq SINE Alu 131 300 -13 1458 88 15 24 chr12 138338704 138338909 -5943580 + L1PA10 LINE L1 5950 6152 -16 447 294 100 27 chr12 138338968 138339267 -5943222 - L2 LINE L2 -184 3129 2809 210 222 37 19 chr12 138339344 138339398 -5943091 - L2 LINE L2 -77 3236 3182 402 278 53 0 chr12 138339795 138339928 -5942561 - MIR SINE MIR -10 252 113 1579 256 108 19 chr12 138340888 138341508 -5940981 + L1MD3 LINE L1 2404 3078 -3068 2329 266 49 64 chr12 138341532 138342862 -5939627 + L1MD3 LINE L1 3191 4500 -1646 246 180 0 20 chr12 138342917 138342967 -5939522 + MLT1K LTR MaLR 194 242 -346 5096 261 100 45 chr12 138343053 138344080 -5938409 + L1MD3 LINE L1 4518 5486 -2509 1856 179 55 25 chr12 138344080 138344444 -5938045 + THE1C LTR MaLR 1 375 0 5096 261 100 45 chr12 138344444 138345430 -5937059 + L1MD3 LINE L1 5486 6416 -1579 461 26 26 26 chr12 138345430 138345507 -5936982 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 5096 261 100 45 chr12 138345507 138346756 -5935733 + L1MD3 LINE L1 6416 7961 -34 565 241 55 89 chr12 138346787 138347024 -5935465 - LTR33A LTR ERVL -294 229 1 1392 206 91 18 chr12 138347485 138347825 -5934664 + MLT1A1 LTR MaLR 1 365 0 2273 187 5 10 chr12 138347932 138348323 -5934166 + MLT1B LTR MaLR 1 389 -1 2764 159 23 13 chr12 138348763 138349236 -5933253 + LTR45B LTR ERV1 12 489 0 1884 184 43 23 chr12 138350769 138351209 -5931280 - L1MB5 LINE L1 -1 6173 5725 664 190 0 9 chr12 138351209 138351325 -5931164 - AluJo SINE Alu -172 140 26 186 260 0 0 chr12 138351752 138351802 -5930687 + L2 LINE L2 3264 3313 0 482 300 21 99 chr12 138352260 138352593 -5929896 - MLT1L LTR MaLR -187 428 122 424 267 142 30 chr12 138352749 138352981 -5929508 - MER113 DNA MER1_type? -74 447 190 248 291 48 29 chr12 138353621 138353724 -5928765 - MER113 DNA MER1_type? 0 521 417 1045 198 9 22 chr12 138353729 138353827 -5928662 - Tigger1 DNA MER2_type 0 2418 2320 2360 126 33 3 chr12 138353827 138354191 -5928298 - THE1C LTR MaLR 0 375 1 1045 198 9 22 chr12 138354191 138354314 -5928175 - Tigger1 DNA MER2_type -98 2320 2200 635 172 86 0 chr12 138354310 138354438 -5928051 - Tigger1 DNA MER2_type -2279 139 1 * 2206 134 0 0 chr12 138354684 138354982 -5927507 - AluSx SINE Alu -14 298 1 1551 232 26 42 chr12 138357824 138358281 -5924208 + LTR40c LTR ERVL 11 460 -5 1512 176 41 8 chr12 138358362 138358629 -5923860 - AluJb SINE Alu -28 284 9 428 283 229 29 chr12 138358841 138359226 -5923263 + L2 LINE L2 2851 3312 -1 657 182 147 18 chr12 138359346 138359516 -5922973 - MER21A LTR ERV1 0 931 740 2165 180 46 10 chr12 138359600 138359994 -5922495 - MER21A LTR ERV1 -145 786 379 1032 234 20 20 chr12 138360002 138360254 -5922235 - MER21A LTR ERV1 -667 264 13 32 0 0 0 chr12 138360270 138360302 -5922187 + AT_rich Low_complexity Low_complexity 1 32 0 325 152 28 34 chr12 138360308 138360486 -5922003 + (TA)n Simple_repeat Simple_repeat 1 177 0 1393 128 55 0 chr12 138360538 138360756 -5921733 - MER30 DNA MER1_type 0 230 1 328 182 52 19 chr12 138360834 138360988 -5921501 + (TA)n Simple_repeat Simple_repeat 1 159 0 937 318 137 34 chr12 138361371 138362586 -5919903 - L2 LINE L2 -28 3285 1918 214 274 116 42 chr12 138362650 138362745 -5919744 - MIR SINE MIR -87 121 20 1010 156 279 13 chr12 138362788 138363025 -5919464 + AluSg1 SINE Alu 1 300 -9 1147 309 25 5 chr12 138364235 138364669 -5917820 + L1ME3A LINE L1 5727 6169 -1 357 24 0 0 chr12 138364694 138364736 -5917753 + (CA)n Simple_repeat Simple_repeat 1 42 0 241 122 0 0 chr12 138364891 138364940 -5917549 + LTR66 LTR ERVL 398 446 -164 432 241 123 21 chr12 138365309 138365496 -5916993 + MLT1H LTR MaLR 39 244 -305 212 184 41 20 chr12 138365497 138365546 -5916943 + A-rich Low_complexity Low_complexity 1 50 0 244 345 18 9 chr12 138365978 138366091 -5916398 + LTR33 LTR ERVL 331 444 -77 251 154 23 54 chr12 138366300 138366430 -5916059 + (TA)n Simple_repeat Simple_repeat 1 126 0 21 36 0 0 chr12 138366486 138366514 -5915975 + AT_rich Low_complexity Low_complexity 1 28 0 809 189 97 5 chr12 138367217 138367413 -5915076 + MER20 DNA MER1_type 3 216 -3 189 371 42 6 chr12 138368612 138368779 -5913710 - MIR SINE MIR -73 189 17 1949 111 38 28 chr12 138368878 138369166 -5913323 - AluSc SINE Alu -18 291 1 205 161 0 0 chr12 138369243 138369274 -5913215 + (TG)n Simple_repeat Simple_repeat 2 32 0 222 364 9 0 chr12 138369392 138369502 -5912987 + L2 LINE L2 3157 3267 -5 391 311 8 8 chr12 138370656 138370788 -5911701 + MIR SINE MIR 88 219 -43 713 201 67 18 chr12 138371034 138371230 -5911259 - MLT1J2 LTR MaLR -241 205 5 210 192 0 0 chr12 138371327 138371379 -5911110 + (TA)n Simple_repeat Simple_repeat 2 53 0 226 158 0 35 chr12 138371404 138371461 -5911028 + (CA)n Simple_repeat Simple_repeat 2 56 0 1972 152 19 104 chr12 138371461 138371660 -5910829 + Tigger2a DNA MER2_type 1 215 -2493 1956 100 26 7 chr12 138371660 138371931 -5910558 + AluSc SINE Alu 1 276 -33 204 40 0 0 chr12 138371933 138371958 -5910531 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 1972 152 19 104 chr12 138371958 138372038 -5910451 + Tigger2a DNA MER2_type 216 301 -2407 1843 166 14 0 chr12 138372038 138372322 -5910167 + AluSx SINE Alu 1 288 -24 1972 152 19 104 chr12 138372322 138372511 -5909978 + Tigger2a DNA MER2_type 301 433 -1 261 0 0 0 chr12 138372525 138372554 -5909935 + (CA)n Simple_repeat Simple_repeat 2 30 0 261 139 0 0 chr12 138374017 138374060 -5908429 + (CA)n Simple_repeat Simple_repeat 2 44 0 1748 155 0 43 chr12 138374877 138375181 -5907308 + AluJb SINE Alu 1 291 -21 560 276 23 37 chr12 138376104 138376318 -5906171 + MIR SINE MIR 34 244 -18 183 181 42 0 chr12 138376335 138376407 -5906082 + (TTA)n Simple_repeat Simple_repeat 2 76 0 492 179 0 0 chr12 138376478 138376562 -5905927 - Charlie1 DNA MER1_type -1 2760 2677 323 314 10 10 chr12 138376743 138376845 -5905644 + MIR SINE MIR 23 124 -84 196 267 53 13 chr12 138377018 138377093 -5905396 + MIR SINE MIR 46 123 -139 246 299 13 78 chr12 138377353 138377506 -5904983 + MIR SINE MIR 11 152 -57 427 309 0 33 chr12 138377584 138377736 -5904753 - MIR SINE MIR -67 195 49 675 99 0 0 chr12 138378745 138378846 -5903643 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 484 237 45 68 chr12 138379529 138379745 -5902744 - LTR45 LTR ERV1 0 602 365 233 192 19 19 chr12 138379788 138379840 -5902649 - MER72 LTR ERV1 -261 461 410 1728 150 10 41 chr12 138382435 138382729 -5899760 - AluJb SINE Alu -27 285 1 423 98 0 0 chr12 138383072 138383133 -5899356 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 1627 176 0 19 chr12 138383133 138383446 -5899043 - AluSx SINE Alu -1 311 5 246 244 70 70 chr12 138383449 138383678 -5898811 - MER113 DNA MER1_type? -200 321 93 477 263 93 66 chr12 138384444 138384810 -5897679 + MLT1L LTR MaLR 203 484 -27 2391 107 0 0 chr12 138385006 138385314 -5897175 - AluSx SINE Alu -4 308 1 336 325 59 39 chr12 138387419 138387490 -5894999 + L1MC5 LINE L1 6979 7047 -914 2279 110 0 0 chr12 138387490 138387782 -5894707 + AluSx SINE Alu 1 292 -20 336 325 59 39 chr12 138387782 138387913 -5894576 + L1MC5 LINE L1 7047 7185 -776 324 93 93 7 chr12 138387918 138388069 -5894420 + (TA)n Simple_repeat Simple_repeat 2 165 0 313 64 112 0 chr12 138388296 138388421 -5894068 + (TA)n Simple_repeat Simple_repeat 2 140 0 301 303 22 0 chr12 138388428 138388517 -5893972 + L1MC4 LINE L1 6613 6703 -1339 * 350 250 0 43 chr12 138388504 138388596 -5893893 + L1MC4 LINE L1 6613 6700 -1342 1551 237 23 0 chr12 138388780 138389080 -5893409 + MLT2B1 LTR ERVL 13 319 -201 241 291 27 27 chr12 138389081 138389191 -5893298 - L1MC4 LINE L1 -1319 6723 6614 280 274 14 0 chr12 138391045 138391118 -5891371 - MIR SINE MIR -70 192 119 312 27 0 0 chr12 138391459 138391496 -5890993 + (CA)n Simple_repeat Simple_repeat 1 37 0 568 302 37 53 chr12 138391776 138392153 -5890336 + L2 LINE L2 2605 2975 -339 406 277 103 3 chr12 138392188 138392391 -5890098 - MIR SINE MIR -1 261 44 280 362 38 0 chr12 138392597 138392782 -5889707 - L2 LINE L2 -1398 1916 1725 1885 98 0 0 chr12 138393091 138393336 -5889153 - AluSg/x SINE Alu -2 310 66 901 261 50 80 chr12 138393364 138393827 -5888662 + L1ME2 LINE L1 5706 6154 -10 497 250 220 10 chr12 138394230 138394430 -5888059 - MLT1G1 LTR MaLR -122 473 232 548 309 75 10 chr12 138394977 138395178 -5887311 - MER58A DNA MER1_type -10 214 1 205 333 26 13 chr12 138395419 138395497 -5886992 + MIR SINE MIR 107 185 -77 300 346 20 0 chr12 138395841 138395942 -5886547 - L1MDa LINE L1 -4564 1976 1874 796 233 5 10 chr12 138395947 138396140 -5886349 - AluJb SINE Alu -2 310 119 929 241 108 42 chr12 138396173 138396703 -5885786 - L1MDa LINE L1 -4704 1836 1272 601 189 27 181 chr12 138396982 138397650 -5884839 - TAR1 Satellite telomeric -1796 315 2 1491 171 29 46 chr12 138397136 138397211 -5885278 - LTR60 LTR ERV1 -3 583 508 2264 107 17 0 chr12 138397211 138397509 -5884980 - AluSx SINE Alu -9 303 1 1491 171 29 46 chr12 138397509 138397784 -5884705 - LTR60 LTR ERV1 -78 508 239 1146 227 26 4 chr12 138397795 138398068 -5884421 - LTR60 LTR ERV1 -307 279 1 324 340 35 7 chr12 138399261 138399405 -5883084 + MLT1I LTR MaLR 1 148 -261 458 288 36 116 chr12 138399584 138400050 -5882439 + L2 LINE L2 2879 3307 -6 255 303 30 30 chr12 138400079 138400211 -5882278 + L1MA8 LINE L1 6120 6251 -40 24 0 0 0 chr12 138400231 138400255 -5882234 + AT_rich Low_complexity Low_complexity 1 24 0 198 103 0 0 chr12 138400530 138400559 -5881930 + (TTG)n Simple_repeat Simple_repeat 2 30 0 239 291 94 13 chr12 138401227 138401380 -5881109 + MIR SINE MIR 60 230 -32 275 269 108 0 chr12 138401578 138401671 -5880818 - L2 LINE L2 -31 3282 3180 534 267 86 0 chr12 138402168 138402378 -5880111 - L2 LINE L2 -453 2861 2634 665 272 12 0 chr12 138402539 138402712 -5879777 + MIR SINE MIR 44 218 -44 296 297 20 0 chr12 138402765 138402866 -5879623 - MLT1I LTR MaLR -26 383 281 352 320 33 20 chr12 138404260 138404410 -5878079 + MIR SINE MIR 10 161 -101 343 216 80 108 chr12 138405596 138405809 -5876680 + LTR16A1 LTR ERVL 244 450 -7 386 319 163 10 chr12 138405848 138406155 -5876334 - L2 LINE L2 -4 3309 2956 21 57 0 0 chr12 138407901 138407936 -5874553 + AT_rich Low_complexity Low_complexity 1 35 0 242 172 31 0 chr12 138409327 138409391 -5873098 + (TATG)n Simple_repeat Simple_repeat 3 68 0 249 204 111 0 chr12 138409430 138409484 -5873005 + LTR48B LTR ERV1 6 65 -579 1322 214 124 51 chr12 138409505 138409917 -5872572 + MER39 LTR ERV1 265 706 -1 379 0 0 0 chr12 138410286 138410330 -5872159 + L1PA3 LINE L1 6109 6152 -3 1781 143 4 4 chr12 138410637 138410903 -5871586 + AluJb SINE Alu 1 266 -46 201 74 0 0 chr12 138410915 138410942 -5871547 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4827 260 74 22 chr12 138411160 138412966 -5869523 + L1M4 LINE L1 2658 4557 -1589 512 152 0 0 chr12 138412967 138413046 -5869443 + L1MD1 LINE L1 5858 5936 -306 1204 258 114 2 chr12 138413097 138413508 -5868981 + L1MD2 LINE L1 5900 6356 -3 225 239 0 0 chr12 138414398 138414444 -5868045 + (CA)n Simple_repeat Simple_repeat 1 46 0 1953 201 139 9 chr12 138414662 138415109 -5867380 - LTR22 LTR ERVK -4 505 1 344 319 31 25 chr12 138417752 138417912 -5864577 - MIR SINE MIR -58 204 44 197 244 24 0 chr12 138417977 138418018 -5864471 - MIR SINE MIR -58 150 109 564 84 0 0 chr12 138418134 138418205 -5864284 + U1 snRNA snRNA 1 71 -94 520 285 72 24 chr12 138418462 138418711 -5863778 - MER113 DNA MER1_type? -128 393 133 2551 91 5 108 chr12 138418835 138419241 -5863248 - THE1B LTR MaLR 0 364 1 369 231 13 90 chr12 138419980 138420136 -5862353 - L2 LINE L2 -10 3303 3160 286 293 27 40 chr12 138420775 138420925 -5861564 + L1MC4a LINE L1 5793 5940 -1868 189 0 0 0 chr12 138420944 138420965 -5861524 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 212 222 0 37 chr12 138421754 138421862 -5860627 + CT-rich Low_complexity Low_complexity 2 105 0 249 290 29 58 chr12 138422188 138422326 -5860163 + MLT1J2 LTR MaLR 258 391 -59 821 272 51 4 chr12 138422408 138422643 -5859846 - MIR SINE MIR -9 253 8 289 260 10 52 chr12 138422749 138422845 -5859644 - MIR SINE MIR -35 227 136 261 57 0 0 chr12 138423511 138423546 -5858943 + (TG)n Simple_repeat Simple_repeat 2 36 0 343 180 16 0 chr12 138424058 138424119 -5858370 - MIR SINE MIR -64 144 83 578 337 98 41 chr12 138424244 138425030 -5857459 + L2 LINE L2 2233 3078 -194 231 61 0 0 chr12 138425596 138425629 -5856860 + (CA)n Simple_repeat Simple_repeat 1 33 0 640 283 137 35 chr12 138425686 138426110 -5856379 + MLT1L LTR MaLR 149 615 0 347 275 56 35 chr12 138426389 138426531 -5855958 + L2 LINE L2 3169 3313 0 3345 166 39 2 chr12 138427556 138428092 -5854397 + MER41D LTR ERV1 1 556 -1 492 287 77 32 chr12 138428188 138428435 -5854054 - MIR SINE MIR 0 262 5 378 294 66 5 chr12 138428545 138428742 -5853747 - L1ME1 LINE L1 -6 6160 5952 246 238 90 49 chr12 138428799 138428921 -5853568 + MIR SINE MIR 21 147 -61 574 265 47 28 chr12 138429059 138429270 -5853219 - L2 LINE L2 0 3313 3099 205 167 10 39 chr12 138429502 138429604 -5852885 + (TA)n Simple_repeat Simple_repeat 2 100 0 214 229 21 0 chr12 138430066 138430114 -5852375 - MIR SINE MIR -151 111 63 233 245 157 57 chr12 138430456 138430615 -5851874 - MIR3 SINE MIR -2 206 32 403 269 85 14 chr12 138431775 138431916 -5850573 + MER117 DNA MER1_type 2 152 -45 375 206 79 56 chr12 138433180 138433306 -5849183 + MIR SINE MIR 102 230 -32 270 353 52 36 chr12 138433456 138433708 -5848781 - L2 LINE L2 -157 3115 2860 897 303 107 40 chr12 138433744 138434193 -5848296 + MLT1K LTR MaLR 90 568 -20 518 284 78 52 chr12 138435201 138435433 -5847056 + MIR SINE MIR 15 252 -10 208 279 144 29 chr12 138435604 138435708 -5846781 - L3 LINE CR1 -19 1558 1443 345 265 27 75 chr12 138435776 138435923 -5846566 - L2 LINE L2 0 3272 3133 412 252 35 17 chr12 138436465 138436580 -5845909 - MIR SINE MIR -109 153 37 489 308 72 72 chr12 138436616 138436895 -5845594 - L3 LINE CR1 -199 1378 1100 369 313 61 67 chr12 138436933 138437278 -5845211 - Charlie8 DNA MER1_type -2014 403 61 276 326 163 21 chr12 138437307 138437595 -5844894 - L3 LINE CR1 -509 1068 740 589 123 0 0 chr12 138437667 138437748 -5844741 + AluSc SINE Alu 2 82 -227 613 117 12 29 chr12 138437756 138437870 -5844619 - MER4B LTR ERV1 -286 493 223 1487 90 65 0 chr12 138437870 138438070 -5844419 + AluSc SINE Alu 89 301 -8 1871 131 59 10 chr12 138438071 138438377 -5844112 + MER4B LTR ERV1 1 321 -289 754 20 61 0 chr12 138438382 138438480 -5844009 - L1P LINE L1 -1026 5120 5017 760 83 15 128 chr12 138438535 138438668 -5843821 + FLAM_C SINE Alu 1 118 -15 1386 117 129 53 chr12 138438668 138438932 -5843557 + MER4B LTR ERV1 327 610 0 23 33 0 0 chr12 138440083 138440113 -5842376 + AT_rich Low_complexity Low_complexity 1 30 0 210 219 0 0 chr12 138440745 138440786 -5841703 + GA-rich Low_complexity Low_complexity 4 44 0 315 179 0 0 chr12 138441953 138442009 -5840480 - L1MC4 LINE L1 -1339 6703 6648 219 318 126 47 chr12 138442105 138442470 -5840019 + L2 LINE L2 2836 3229 -84 249 108 0 0 chr12 138443142 138443179 -5839310 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 4804 63 27 7 chr12 138443251 138444264 -5838225 - MER11A LTR ERVK 0 1266 1 294 29 0 0 chr12 138444348 138444383 -5838106 + (GA)n Simple_repeat Simple_repeat 2 36 0 6298 209 22 18 chr12 138444825 138447160 -5835329 + L1MC1 LINE L1 3701 6041 -292 2257 125 51 17 chr12 138447236 138447588 -5834901 - THE1B LTR MaLR 0 364 1 477 245 80 18 chr12 138448359 138448522 -5833967 + MLT1K LTR MaLR 111 283 -305 212 364 80 0 chr12 138449217 138449305 -5833184 + MIR SINE MIR 5 99 -163 899 260 39 72 chr12 138449383 138449799 -5832690 + L2 LINE L2 2912 3313 0 637 282 93 29 chr12 138450639 138450919 -5831570 + LTR52 LTR ERVL 46 343 -78 345 311 73 0 chr12 138451003 138451167 -5831322 + MER113 DNA MER1_type? 276 451 -70 220 307 18 70 chr12 138451475 138451589 -5830900 + L2 LINE L2 3206 3313 0 455 263 0 51 chr12 138451824 138451961 -5830528 - MER91B DNA MER1_type -60 130 1 743 201 65 38 chr12 138453239 138453349 -5829140 - MER58A DNA MER1_type -2231 189 71 1512 133 72 80 chr12 138453349 138453437 -5829052 - THE1C LTR MaLR -1 374 287 2468 57 7 0 chr12 138453437 138453738 -5828751 + AluY SINE Alu 1 303 -8 1512 133 72 80 chr12 138453738 138454026 -5828463 - THE1C LTR MaLR -88 287 1 743 201 65 38 chr12 138454026 138454099 -5828390 - MER58A DNA MER1_type -2349 71 1 1085 303 140 22 chr12 138454099 138454952 -5827537 + L2 LINE L2 2347 3312 -1 2316 96 0 3 chr12 138455008 138455311 -5827178 - AluSp SINE Alu -5 308 7 507 329 34 26 chr12 138455395 138455811 -5826678 + L1ME4a LINE L1 5456 5874 -247 596 274 84 25 chr12 138456539 138456977 -5825512 + L1ME4a LINE L1 5654 6117 -4 571 267 38 0 chr12 138457553 138457684 -5824805 + MER91C DNA MER1_type 5 140 0 1191 165 66 5 chr12 138458637 138458849 -5823640 + AluJo SINE Alu 68 292 -20 325 300 64 7 chr12 138458863 138459003 -5823486 - MIR SINE MIR -51 211 64 386 239 34 17 chr12 138459189 138459306 -5823183 + MIR SINE MIR 115 233 -29 190 318 32 0 chr12 138459347 138459410 -5823079 + L2 LINE L2 3206 3270 -2 365 243 45 18 chr12 138460233 138460344 -5822145 + MLT1I LTR MaLR 296 409 0 685 224 0 0 chr12 138461273 138461420 -5821069 + L1PB4 LINE L1 6010 6156 0 305 336 0 10 chr12 138461452 138461556 -5820933 - MER5A DNA MER1_type -49 140 38 2058 85 4 4 chr12 138462510 138462833 -5819656 - AluY SINE Alu 0 332 10 224 298 67 76 chr12 138463218 138463456 -5819033 - L2 LINE L2 -1210 2104 1869 970 152 92 52 chr12 138463561 138463689 -5818800 - L1MA7 LINE L1 -33 6258 6137 1815 167 27 3 chr12 138463689 138463982 -5818507 + AluJb SINE Alu 1 300 -12 970 152 92 52 chr12 138463982 138464103 -5818386 - L1MA7 LINE L1 -154 6137 5999 586 350 102 25 chr12 138464105 138464622 -5817867 - L2 LINE L2 -576 2738 2182 331 306 16 16 chr12 138464936 138465057 -5817432 + MIR SINE MIR 27 147 -61 1019 256 48 43 chr12 138466411 138466809 -5815680 - MLT1J LTR MaLR 0 511 112 1033 272 110 17 chr12 138466929 138467403 -5815086 - LTR33A LTR ERVL -3 520 3 2310 124 57 3 chr12 138468510 138468864 -5813625 - THE1C LTR MaLR 0 375 3 243 146 0 0 chr12 138469317 138469358 -5813131 + (TG)n Simple_repeat Simple_repeat 2 42 0 1948 151 85 14 chr12 138469383 138469747 -5812742 + MLT1B LTR MaLR 1 390 0 236 393 0 0 chr12 138469748 138469832 -5812657 + L2 LINE L2 3143 3226 -46 483 265 43 43 chr12 138469880 138470065 -5812424 + MIR SINE MIR 7 191 -71 183 250 0 0 chr12 138470365 138470433 -5812056 + (TA)n Simple_repeat Simple_repeat 2 69 0 2805 116 52 4 chr12 138471457 138471916 -5810573 + L1PB1 LINE L1 5668 6148 -3 422 348 35 18 chr12 138472470 138472697 -5809792 - MIR SINE MIR -27 235 5 291 307 122 38 chr12 138472993 138473231 -5809258 + L2 LINE L2 2182 2439 -875 21 0 0 0 chr12 138473813 138473834 -5808655 + AT_rich Low_complexity Low_complexity 1 21 0 237 368 52 63 chr12 138475072 138475455 -5807034 + L2 LINE L2 2409 2787 -527 233 337 74 25 chr12 138475441 138475604 -5806885 + MIR SINE MIR 37 207 -55 * 4970 89 3 0 chr12 138475707 138476381 -5806108 - L1PA10 LINE L1 -11 6157 5482 501 129 0 0 chr12 138476482 138476567 -5805922 - L1P5 LINE L1 -479 5672 5588 266 347 111 44 chr12 138477769 138477994 -5804495 - L2 LINE L2 -25 3247 3008 374 253 24 78 chr12 138479024 138479190 -5803299 + MIR3 SINE MIR 4 160 -48 26 30 0 0 chr12 138480591 138480624 -5801865 + AT_rich Low_complexity Low_complexity 1 33 0 254 209 23 70 chr12 138481532 138481567 -5800922 + MLT1J2 LTR MaLR 1 36 -414 488 256 125 12 chr12 138481567 138481735 -5800754 - MER5A DNA MER1_type -2 187 1 254 209 23 70 chr12 138481735 138481785 -5800704 + MLT1J2 LTR MaLR 36 82 -368 1346 178 21 0 chr12 138481920 138482201 -5800288 + L1MA5A LINE L1 5941 6227 -70 317 285 109 15 chr12 138482421 138482542 -5799947 + MIR SINE MIR 5 142 -120 486 191 0 9 chr12 138482542 138482657 -5799832 + L1MB8 LINE L1 6065 6178 0 317 285 109 15 chr12 138482657 138482672 -5799817 + MIR SINE MIR 142 154 -108 300 273 71 0 chr12 138482710 138482809 -5799680 - MIR SINE MIR -2 260 155 407 238 82 85 chr12 138483009 138483291 -5799198 - L1MC4a LINE L1 -1799 6009 5729 1650 175 47 12 chr12 138483446 138483789 -5798700 + MLT1A1 LTR MaLR 1 355 -10 667 261 35 22 chr12 138484092 138484322 -5798167 + L1ME3 LINE L1 5922 6154 -8 226 259 19 0 chr12 138484328 138484382 -5798107 + GA-rich Low_complexity Low_complexity 2 56 0 229 100 120 0 chr12 138484866 138484916 -5797573 - L1MB2 LINE L1 0 6171 6116 23 0 0 0 chr12 138484916 138484939 -5797550 + AT_rich Low_complexity Low_complexity 1 23 0 1088 234 0 0 chr12 138484939 138485187 -5797302 - AluSx SINE Alu -27 285 38 2203 186 63 17 chr12 138487453 138487811 -5794678 - L1PB3 LINE L1 0 6154 5814 486 49 0 0 chr12 138487811 138487872 -5794617 + (TA)n Simple_repeat Simple_repeat 1 61 0 2203 186 63 17 chr12 138487872 138488270 -5794219 - L1PB3 LINE L1 -340 5814 5347 186 287 106 21 chr12 138488928 138489022 -5793467 - L2 LINE L2 -1795 1519 1418 2268 122 0 10 chr12 138489336 138489647 -5792842 + AluSq SINE Alu 1 308 -5 661 142 8 67 chr12 138489696 138489830 -5792659 + AluJo SINE Alu 9 134 -178 210 143 0 0 chr12 138489834 138489869 -5792620 + (TA)n Simple_repeat Simple_repeat 1 35 0 1368 164 35 0 chr12 138489970 138490202 -5792287 + AluJb SINE Alu 64 303 -9 454 243 71 43 chr12 138490243 138490383 -5792106 - MIR SINE MIR -112 150 7 355 255 66 0 chr12 138490631 138490737 -5791752 + MER103 DNA DNA 7 119 -47 850 225 27 5 chr12 138490794 138491016 -5791473 + MER68 LTR ERV1 1 227 -335 831 209 6 23 chr12 138491049 138491226 -5791263 + AluJo SINE Alu 1 174 -138 270 163 0 0 chr12 138491360 138491403 -5791086 - Alu SINE Alu -257 44 2 518 48 48 19 chr12 138491550 138491655 -5790834 + (TA)n Simple_repeat Simple_repeat 2 109 0 780 191 67 143 chr12 138491655 138491915 -5790574 + Charlie4a DNA MER1_type 83 294 -1667 2024 63 0 0 chr12 138491915 138492168 -5790321 - L1PA5 LINE L1 -8 6146 5894 780 191 67 143 chr12 138492168 138492367 -5790122 + Charlie4a DNA MER1_type 294 507 -1 491 237 42 8 chr12 138493123 138493241 -5789248 + L2 LINE L2 3190 3311 -2 204 125 0 0 chr12 138493241 138493273 -5789216 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 566 326 22 67 chr12 138493451 138493718 -5788771 - L2 LINE L2 -2 3270 3016 1300 214 24 0 chr12 138494139 138494387 -5788102 + AluJb SINE Alu 1 254 -58 194 0 0 37 chr12 138495523 138495550 -5786939 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1153 72 0 0 chr12 138495550 138495703 -5786786 - L1PA4 LINE L1 -16 6139 5987 263 232 86 16 chr12 138495975 138496099 -5786390 - MLT1J1 LTR MaLR 0 446 312 348 208 176 8 chr12 138496217 138496342 -5786147 - MLT1J1 LTR MaLR -300 146 1 33 0 0 0 chr12 138496344 138496377 -5786112 + AT_rich Low_complexity Low_complexity 1 33 0 270 301 53 35 chr12 138496389 138496502 -5785987 - MIR SINE MIR -73 135 21 611 240 7 53 chr12 138497101 138497251 -5785238 - MIR SINE MIR -102 160 18 1088 234 87 13 chr12 138497256 138497555 -5784934 - MLT1F LTR MaLR -1 541 221 268 208 0 0 chr12 138498166 138498214 -5784275 + MIR SINE MIR 200 247 -15 398 263 88 51 chr12 138498291 138498428 -5784061 + L2 LINE L2 3168 3309 -4 228 256 0 0 chr12 138498476 138498562 -5783927 + (CAT)n Simple_repeat Simple_repeat 2 87 0 314 295 45 64 chr12 138498799 138498955 -5783534 + MIR SINE MIR 31 183 -79 211 353 59 59 chr12 138499393 138499512 -5782977 - L2 LINE L2 -12 3260 3142 322 250 12 31 chr12 138499582 138499721 -5782768 + MLT1L LTR MaLR 148 298 -290 389 321 114 16 chr12 138500051 138500244 -5782245 - L2 LINE L2 -189 3083 2872 619 262 58 6 chr12 138501531 138501703 -5780786 - MIR SINE MIR -63 199 19 772 164 46 0 chr12 138502661 138502813 -5779676 + L1MA10 LINE L1 6166 6324 -10 1928 167 3 3 chr12 138502813 138503124 -5779365 - AluJo SINE Alu -1 311 1 24 86 0 0 chr12 138503126 138503161 -5779328 + AT_rich Low_complexity Low_complexity 1 35 0 1264 233 69 47 chr12 138503299 138503707 -5778782 + LTR16A LTR ERVL 25 441 -9 598 328 64 13 chr12 138504110 138504345 -5778144 - MIR SINE MIR -14 248 2 225 0 0 0 chr12 138506326 138506351 -5776138 + (A)n Simple_repeat Simple_repeat 1 25 0 26 30 0 0 chr12 138506724 138506757 -5775732 + AT_rich Low_complexity Low_complexity 1 33 0 569 231 0 7 chr12 138506941 138507088 -5775401 - MLT2B1 LTR ERVL -369 151 6 24 0 0 0 chr12 138507964 138507988 -5774501 + AT_rich Low_complexity Low_complexity 1 24 0 274 71 0 24 chr12 138508666 138508708 -5773781 - THE1C LTR MaLR -334 41 1 9036 132 32 48 chr12 138508708 138510313 -5772176 - THE1C-int LTR MaLR 0 1580 1 645 101 10 0 chr12 138510313 138510412 -5772077 - THE1C LTR MaLR 0 375 276 204 40 0 0 chr12 138511224 138511249 -5771240 + (TG)n Simple_repeat Simple_repeat 2 26 0 270 145 43 43 chr12 138511627 138511696 -5770793 - L1MD1 LINE L1 -11 6231 6163 189 74 0 0 chr12 138511749 138511776 -5770713 + (TG)n Simple_repeat Simple_repeat 2 28 0 1204 170 82 18 chr12 138511778 138512060 -5770429 - L1MD2 LINE L1 -229 6130 5831 578 215 0 0 chr12 138512160 138512281 -5770208 + MER20 DNA MER1_type 99 219 0 383 308 47 0 chr12 138512714 138512821 -5769668 - L2 LINE L2 -1 3312 3201 751 321 83 13 chr12 138513260 138513727 -5768762 + LTR33 LTR ERVL 1 500 -21 311 318 12 0 chr12 138513736 138513821 -5768668 + L2 LINE L2 3187 3272 0 342 254 101 83 chr12 138515146 138515363 -5767126 + MIR SINE MIR 31 251 -11 414 167 0 0 chr12 138515585 138515651 -5766838 - AluS SINE Alu -247 66 1 1479 121 0 0 chr12 138515652 138515884 -5766605 - L1P LINE L1 -1131 5015 4784 587 218 65 6 chr12 138517884 138518054 -5764435 - L1MD2 LINE L1 -528 5636 5457 760 179 0 15 chr12 138518154 138518288 -5764201 + FLAM_C SINE Alu 1 132 -1 298 345 63 17 chr12 138518343 138518517 -5763972 + MER5A DNA MER1_type 7 188 -1 495 215 35 35 chr12 138518658 138518830 -5763659 + L1MCa LINE L1 1233 1404 -5022 1709 187 3 17 chr12 138518832 138519131 -5763358 + AluJb SINE Alu 1 295 -17 1481 197 13 17 chr12 138519554 138519853 -5762636 - MLT2B1 LTR ERVL -222 298 1 548 336 60 57 chr12 138519871 138520240 -5762249 - L2 LINE L2 -397 2917 2548 246 293 99 32 chr12 138520393 138520516 -5761973 + MER5B DNA MER1_type 54 181 -8 267 310 35 55 chr12 138521188 138521333 -5761156 - MIR SINE MIR -49 213 72 930 236 9 70 chr12 138521360 138521826 -5760663 - MLT2B1 LTR ERVL -28 492 69 4469 169 34 8 chr12 138522357 138523329 -5759160 - L1MB2 LINE L1 0 6171 5167 781 157 66 12 chr12 138523339 138523505 -5758984 + MER58B DNA MER1_type 167 341 0 917 170 21 26 chr12 138523671 138523865 -5758624 - L1M3 LINE L1 -600 5571 5379 213 311 88 47 chr12 138524118 138524311 -5758178 + L2 LINE L2 474 674 -2640 1105 130 0 0 chr12 138525326 138525487 -5757002 - AluSg/x SINE Alu -18 292 132 302 287 113 36 chr12 138526019 138526214 -5756275 + Charlie7 DNA MER1_type 206 415 -2197 334 289 39 0 chr12 138526693 138526797 -5755692 + MLT1G LTR MaLR 10 117 -473 460 294 6 17 chr12 138526983 138527163 -5755326 + MLT1H1 LTR MaLR 371 548 -7 22 35 0 0 chr12 138529803 138529832 -5752657 + AT_rich Low_complexity Low_complexity 1 29 0 2418 187 41 12 chr12 138530434 138530941 -5751548 + Tigger7 DNA MER2_type 1 522 -1965 382 185 136 0 chr12 138530940 138531021 -5751468 + Tigger7 DNA MER2_type 2400 2491 0 * 21 0 0 0 chr12 138531355 138531376 -5751113 + AT_rich Low_complexity Low_complexity 1 21 0 204 158 0 26 chr12 138532011 138532025 -5750464 + GA-rich Low_complexity Low_complexity 2 15 -23 1957 151 3 16 chr12 138532025 138532337 -5750152 + AluJo SINE Alu 1 308 -4 204 158 0 26 chr12 138532337 138532360 -5750129 + GA-rich Low_complexity Low_complexity 15 38 0 227 234 62 0 chr12 138532992 138533056 -5749433 + CT-rich Low_complexity Low_complexity 5 72 0 254 285 91 83 chr12 138533060 138533143 -5749346 - L3b LINE CR1 -183 1400 1319 1850 147 14 3 chr12 138533143 138533436 -5749053 - AluJb SINE Alu -14 298 3 254 285 91 83 chr12 138533436 138533594 -5748895 - L3b LINE CR1 -264 1319 1157 277 351 62 43 chr12 138534273 138534308 -5748181 - MIR SINE MIR -19 243 210 1364 167 107 0 chr12 138534308 138534571 -5747918 - AluJo SINE Alu -21 291 1 277 351 62 43 chr12 138534571 138534743 -5747746 - MIR SINE MIR -52 210 32 239 363 98 26 chr12 138534751 138534944 -5747545 + L3b LINE CR1 1374 1580 -3 1804 67 0 0 chr12 138535034 138535274 -5747215 - L1PA5 LINE L1 -464 5690 5451 3362 86 2 2 chr12 138535274 138535722 -5746767 + L1PA5 LINE L1 5699 6154 0 356 310 35 28 chr12 138535868 138536013 -5746476 + MIR SINE MIR 85 230 -32 212 351 115 52 chr12 138536044 138536235 -5746254 + L2 LINE L2 3070 3272 0 * 377 262 30 4 chr12 138536232 138536357 -5746132 - MIR SINE MIR -62 146 51 734 285 127 47 chr12 138536527 138537148 -5745341 - L2 LINE L2 -746 2568 1898 363 222 10 50 chr12 138537384 138537483 -5745006 - MIR SINE MIR -70 192 98 1761 155 18 0 chr12 138537485 138537763 -5744726 - AluJb SINE Alu -29 283 1 1653 155 19 8 chr12 138537796 138538054 -5744435 + AluSx SINE Alu 3 263 -49 1473 182 31 17 chr12 138538616 138538907 -5743582 - AluJo SINE Alu -17 295 1 461 290 40 45 chr12 138540619 138540819 -5741670 + MIR SINE MIR 6 204 -58 1941 153 52 43 chr12 138540921 138541502 -5740987 - THE1C-int LTR MaLR -1006 574 1 2346 110 38 30 chr12 138541502 138541874 -5740615 - THE1C LTR MaLR 0 375 1 583 290 60 8 chr12 138543141 138543393 -5739096 - L1ME3A LINE L1 -236 5934 5670 539 218 32 51 chr12 138543420 138543636 -5738853 - L1ME3A LINE L1 -2009 4137 3926 22 0 0 0 chr12 138544580 138544602 -5737887 + AT_rich Low_complexity Low_complexity 1 22 0 297 182 80 11 chr12 138544628 138544716 -5737773 - L1MC5 LINE L1 -60 7901 7808 280 244 90 0 chr12 138545893 138545971 -5736518 - MIR SINE MIR -60 148 64 308 150 12 62 chr12 138546460 138546540 -5735949 + MLT1K LTR MaLR 507 582 -6 429 220 129 35 chr12 138547432 138547750 -5734739 - L1ME4a LINE L1 -2 6119 5772 1369 204 56 34 chr12 138547791 138548148 -5734341 + MLT1A1 LTR MaLR 1 365 0 245 257 88 56 chr12 138548219 138548538 -5733951 + LTR33 LTR ERVL 24 352 -169 188 234 0 0 chr12 138550024 138550071 -5732418 + L2 LINE L2 3266 3312 -1 36 77 0 0 chr12 138550821 138550899 -5731590 + AT_rich Low_complexity Low_complexity 1 78 0 230 289 130 10 chr12 138551132 138551340 -5731149 - L1ME3A LINE L1 -222 5948 5716 197 33 33 0 chr12 138551899 138551929 -5730560 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 398 226 35 35 chr12 138552251 138552366 -5730123 - MIR SINE MIR -56 206 92 2395 59 0 7 chr12 138554940 138555243 -5727246 - AluY SINE Alu -10 301 1 508 299 68 6 chr12 138555959 138556136 -5726353 - MIR SINE MIR -28 234 47 562 283 82 0 chr12 138557294 138557478 -5725011 - MLT2B1 LTR ERVL -321 199 1 1174 267 149 63 chr12 138557944 138558804 -5723685 + L2 LINE L2 2363 3298 -15 288 391 51 47 chr12 138559170 138559446 -5723043 + L2 LINE L2 2987 3263 -9 22 35 0 0 chr12 138559474 138559503 -5722986 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 138559763 138559784 -5722705 + AT_rich Low_complexity Low_complexity 1 21 0 394 324 37 0 chr12 138560742 138560878 -5721611 - MIR SINE MIR -44 218 78 387 283 38 9 chr12 138561075 138561181 -5721308 + MER96 DNA MER1_type? 1 109 -66 476 282 24 8 chr12 138561631 138561755 -5720734 - MIR3 SINE MIR -50 158 33 221 368 0 21 chr12 138561923 138562018 -5720471 + MER5A DNA MER1_type 14 106 -83 2153 111 0 14 chr12 138562435 138562732 -5719757 - AluSx SINE Alu -17 295 3 328 209 78 54 chr12 138562822 138562951 -5719538 + Charlie8 DNA MER1_type 43 174 -2243 762 245 122 21 chr12 138562966 138563265 -5719224 + MLT1A1 LTR MaLR 15 364 -1 671 275 148 42 chr12 138563322 138563795 -5718694 + MLT1H1 LTR MaLR 3 525 -30 2120 132 0 0 chr12 138563968 138564256 -5718233 - AluSx SINE Alu -23 289 2 28 29 0 0 chr12 138564260 138564295 -5718194 + AT_rich Low_complexity Low_complexity 1 35 0 1448 281 72 21 chr12 138564657 138565412 -5717077 + L1MD2 LINE L1 3964 4756 -1390 647 263 58 19 chr12 138565412 138565617 -5716872 - MER20 DNA MER1_type -1 218 6 1609 273 30 52 chr12 138565618 138566249 -5716240 + L1MD2 LINE L1 4753 5369 -777 886 230 10 15 chr12 138566512 138566716 -5715773 + AluY SINE Alu 106 308 -3 861 263 113 38 chr12 138566716 138567603 -5714886 + L1MD2 LINE L1 5389 6355 -4 330 340 54 14 chr12 138567611 138567979 -5714510 + L1MC1 LINE L1 5592 5974 -359 * 1558 254 80 6 chr12 138567650 138568161 -5714328 + L1MB7 LINE L1 5636 6184 0 180 0 0 0 chr12 138568680 138568700 -5713789 + (A)n Simple_repeat Simple_repeat 1 20 0 226 281 125 0 chr12 138568739 138568835 -5713654 + L2 LINE L2 3163 3270 -2 266 273 94 8 chr12 138569145 138569273 -5713216 + HAL1b LINE L1 772 910 -438 23 0 0 0 chr12 138569428 138569451 -5713038 + AT_rich Low_complexity Low_complexity 1 23 0 2646 153 44 30 chr12 138569489 138569521 -5712968 - L1MA9 LINE L1 0 6312 6282 2187 102 3 3 chr12 138569521 138569815 -5712674 + AluSp SINE Alu 6 299 -14 2646 153 44 30 chr12 138569815 138570287 -5712202 - L1MA9 LINE L1 -30 6282 5801 1233 184 41 0 chr12 138570287 138570513 -5711976 + L1MA9 LINE L1 5549 5787 -525 243 61 0 0 chr12 138570513 138570546 -5711943 + (CA)n Simple_repeat Simple_repeat 1 33 0 1233 184 41 0 chr12 138570546 138570564 -5711925 + L1MA7 LINE L1 5787 5803 -509 221 328 122 61 chr12 138571475 138571655 -5710834 - MIR SINE MIR -58 204 14 225 0 0 0 chr12 138572408 138572433 -5710056 + (TA)n Simple_repeat Simple_repeat 1 25 0 2026 108 10 10 chr12 138572435 138572731 -5709758 - AluSx SINE Alu -16 296 1 2220 108 0 0 chr12 138573536 138573841 -5708648 - AluSg1 SINE Alu -4 305 1 965 108 48 0 chr12 138573848 138574015 -5708474 - L1MA7 LINE L1 -4 6287 6113 593 168 80 0 chr12 138574016 138574129 -5708360 + L1MA7 LINE L1 5828 5949 -342 3083 226 94 30 chr12 138574252 138575227 -5707262 - L1MD2 LINE L1 -1 6358 5314 1694 169 0 30 chr12 138575227 138575522 -5706967 - AluJb SINE Alu -21 291 6 3083 226 94 30 chr12 138575522 138575557 -5706932 - L1MD2 LINE L1 -1045 5314 5283 752 227 0 0 chr12 138575853 138575985 -5706504 + FLAM_A SINE Alu 1 132 -1 422 325 151 30 chr12 138576132 138576470 -5706019 - L2 LINE L2 0 3313 2935 2025 228 19 88 chr12 138576677 138576964 -5705525 - REP3 LTR ERV 0 562 257 2268 120 0 0 chr12 138576964 138577272 -5705217 - AluSc SINE Alu -1 308 1 2025 228 19 88 chr12 138577272 138577428 -5705061 - REP3 LTR ERV -305 257 166 1791 158 32 0 chr12 138577428 138577713 -5704776 - AluJb SINE Alu -16 296 3 2025 228 19 88 chr12 138577713 138577848 -5704641 - REP3 LTR ERV -396 166 23 254 176 0 95 chr12 138580166 138580240 -5702249 - MER3 DNA MER1_type -4 205 139 216 0 0 0 chr12 138581061 138581085 -5701404 + (T)n Simple_repeat Simple_repeat 1 24 0 192 97 0 0 chr12 138581349 138581380 -5701109 + (TG)n Simple_repeat Simple_repeat 1 31 0 1318 194 68 18 chr12 138581624 138581903 -5700586 + MER68 LTR ERV1 22 314 -248 213 149 21 0 chr12 138583062 138583109 -5699380 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1674 108 73 0 chr12 138583111 138583343 -5699146 - AluSx SINE Alu -25 287 39 308 308 15 31 chr12 138583375 138583505 -5698984 + L2 LINE L2 3137 3264 -8 912 219 36 36 chr12 138583687 138583906 -5698583 + MER20 DNA MER1_type 1 219 0 253 218 167 39 chr12 138584007 138584085 -5698404 - L2 LINE L2 -18 3295 3208 2475 193 57 80 chr12 138584132 138584240 -5698249 + L1MD2 LINE L1 5386 5495 -864 1500 209 7 26 chr12 138584240 138584542 -5697947 + AluJo SINE Alu 2 297 -15 2475 193 57 80 chr12 138584542 138585247 -5697242 + L1MD2 LINE L1 5495 6355 -4 355 154 17 12 chr12 138585259 138585319 -5697170 - L1MA7 LINE L1 -308 5983 5924 926 124 90 0 chr12 138585319 138585497 -5696992 + L1MA7 LINE L1 6096 6289 -2 355 154 17 12 chr12 138585497 138585511 -5696978 - L1MA7 LINE L1 -367 5924 5912 34 42 0 0 chr12 138585532 138585580 -5696909 + AT_rich Low_complexity Low_complexity 1 48 0 473 73 118 0 chr12 138585585 138585653 -5696836 + MADE1 DNA Mariner 1 76 -4 413 200 0 0 chr12 138585680 138585760 -5696729 - L2 LINE L2 -249 3064 2985 457 222 111 8 chr12 138586051 138586168 -5696321 + L2 LINE L2 3184 3312 -1 825 228 32 43 chr12 138586764 138587045 -5695444 + MER33 DNA MER1_type 1 278 -46 1169 278 27 42 chr12 138587048 138587527 -5694962 + L1MEc LINE L1 40 511 -5885 917 291 99 58 chr12 138587785 138588353 -5694136 - MLT1E LTR MaLR -1 592 2 1031 290 34 11 chr12 138588360 138588739 -5693750 + L1MEc LINE L1 587 974 -5422 787 213 19 0 chr12 138588748 138588903 -5693586 - MLT2B2 LTR ERVL -355 160 3 241 217 196 0 chr12 138588985 138589077 -5693412 + L1ME4a LINE L1 5978 6087 -34 235 161 0 195 chr12 138590436 138590554 -5691935 - L1M4 LINE L1 -1266 4880 4786 832 108 169 0 chr12 138590554 138590684 -5691805 - AluSg/x SINE Alu -6 304 153 3019 249 21 22 chr12 138590773 138591288 -5691201 - L1ME1 LINE L1 -7 6159 5651 3141 115 5 7 chr12 138591288 138591723 -5690766 - MER57B LTR ERV1 0 434 1 3019 249 21 22 chr12 138591723 138592174 -5690315 - L1ME1 LINE L1 -515 5651 5201 396 103 0 0 chr12 138592197 138592255 -5690234 + (TA)n Simple_repeat Simple_repeat 2 59 0 2115 145 0 0 chr12 138592298 138592601 -5689888 - AluSx SINE Alu -5 307 5 814 223 11 0 chr12 138592636 138592824 -5689665 - L1P LINE L1 -4297 1849 1660 1930 161 3 3 chr12 138592934 138593226 -5689263 - AluSq SINE Alu -21 292 1 340 182 88 81 chr12 138593231 138593379 -5689110 - L1M4 LINE L1 -1347 4799 4651 23 0 0 0 chr12 138594447 138594470 -5688019 + AT_rich Low_complexity Low_complexity 1 23 0 295 250 51 148 chr12 138595521 138595639 -5686850 - L2 LINE L2 0 3313 3220 2031 106 0 40 chr12 138595639 138595940 -5686549 - AluSg SINE Alu 0 310 22 295 250 51 148 chr12 138595940 138596017 -5686472 - L2 LINE L2 -93 3220 3137 243 284 111 0 chr12 138596319 138596400 -5686089 + MLT1I LTR MaLR 320 409 0 220 350 181 6 chr12 138596418 138596595 -5685894 - L2 LINE L2 -205 3108 2901 222 377 6 27 chr12 138596618 138596801 -5685688 + (CACG)n Simple_repeat Simple_repeat 1 179 0 195 236 0 0 chr12 138596809 138596881 -5685608 + (CA)n Simple_repeat Simple_repeat 1 72 0 1005 146 23 12 chr12 138597095 138597266 -5685223 - MLT1C LTR MaLR -2 465 293 434 257 53 20 chr12 138597258 138597410 -5685079 - MLT1C LTR MaLR -409 158 2 * 372 273 105 17 chr12 138597447 138597619 -5684870 + MIR SINE MIR 29 215 -47 1307 195 0 76 chr12 138597696 138598024 -5684465 + AluJb SINE Alu 5 307 -5 1376 134 57 0 chr12 138598088 138598335 -5684154 - L1MA8 LINE L1 -117 6174 5914 1104 135 42 21 chr12 138598331 138598524 -5683965 + L1MA8 LINE L1 5726 5922 -369 * 544 200 52 13 chr12 138598518 138598673 -5683816 - L1ME1 LINE L1 -944 5202 5042 * 3654 205 58 16 chr12 138598684 138599648 -5682841 - L1MB5 LINE L1 -6 6168 5162 21 57 0 0 chr12 138602657 138602692 -5679797 + AT_rich Low_complexity Low_complexity 1 35 0 242 172 31 0 chr12 138604083 138604161 -5678328 + (TATG)n Simple_repeat Simple_repeat 1 80 0 249 204 111 0 chr12 138604186 138604240 -5678249 + LTR48B LTR ERV1 6 65 -579 1220 235 116 46 chr12 138604261 138604674 -5677815 + MER39 LTR ERV1 265 706 -1 379 0 0 0 chr12 138605040 138605084 -5677405 + L1PA3 LINE L1 6109 6152 -3 1741 158 22 4 chr12 138605391 138605696 -5676793 + AluJb SINE Alu 1 310 0 4330 265 76 22 chr12 138605914 138607700 -5674789 + L1M4 LINE L1 2658 4539 -1607 303 265 46 33 chr12 138608847 138608998 -5673491 + L1MEc LINE L1 472 624 -6201 180 338 65 36 chr12 138610442 138610581 -5671908 - MER5A DNA MER1_type -4 185 43 * 221 254 115 82 chr12 138610464 138610586 -5671903 + MER5A DNA MER1_type 38 163 -26 495 150 0 0 chr12 138610676 138610756 -5671733 - MER51A LTR ERV1 -18 616 537 331 239 106 0 chr12 138611111 138611253 -5671236 + L1ME4a LINE L1 5964 6120 -1 2176 91 8 136 chr12 138611554 138611960 -5670529 + MER51A LTR ERV1 1 447 -187 261 233 3 22 chr12 138612256 138612345 -5670144 - LTR41 LTR ERVL -1 794 687 1908 126 12 44 chr12 138612365 138612706 -5669783 - HSMAR2 DNA Mariner -2 1300 971 1427 164 77 50 chr12 138612711 138613009 -5669480 - AluJo SINE Alu 0 312 7 5720 143 16 27 chr12 138613015 138614013 -5668476 - HSMAR2 DNA Mariner -315 987 1 329 239 9 124 chr12 138614014 138614127 -5668362 - LTR41 LTR ERVL -123 650 551 481 250 157 5 chr12 138614273 138614477 -5668012 - LTR50 LTR ERVL -540 255 21 798 295 55 55 chr12 138615602 138616450 -5666039 + L1MEc LINE L1 1013 1772 -4838 1142 226 31 42 chr12 138616522 138616881 -5665608 + L1ME1 LINE L1 5808 6162 -4 606 308 132 6 chr12 138616927 138617356 -5665133 - MLT1K LTR MaLR -6 582 44 389 371 8 47 chr12 138618062 138618315 -5664174 + L2 LINE L2 2838 3080 -233 216 316 41 0 chr12 138618994 138619092 -5663397 - MIR SINE MIR -2 260 159 344 277 81 93 chr12 138619114 138619435 -5663054 - MLT1I LTR MaLR -33 376 60 1245 213 40 58 chr12 138619435 138619811 -5662678 - MLT1A2 LTR MaLR 0 374 6 396 308 46 8 chr12 138619907 138620037 -5662452 - MIR SINE MIR -101 161 27 330 45 0 0 chr12 138620625 138620669 -5661820 + (CA)n Simple_repeat Simple_repeat 2 45 0 1032 187 33 70 chr12 138621198 138621645 -5660844 - MLT1D LTR MaLR -2 503 9 798 191 19 6 chr12 138622190 138622352 -5660137 + L1MB3 LINE L1 6016 6179 -4 209 274 41 27 chr12 138622458 138622531 -5659958 + MIR SINE MIR 77 150 -112 353 294 119 45 chr12 138622552 138623065 -5659424 + L2 LINE L2 2425 2975 -339 207 204 0 0 chr12 138623189 138623233 -5659256 + (CA)n Simple_repeat Simple_repeat 2 45 0 218 308 9 45 chr12 138623318 138623443 -5659046 + A-rich Low_complexity Low_complexity 2 210 0 187 353 0 0 chr12 138623532 138623600 -5658889 - L2 LINE L2 -9 3304 3237 738 127 0 1 chr12 138623606 138623870 -5658619 + AluSc SINE Alu 19 314 0 577 297 24 18 chr12 138623894 138624258 -5658231 - L2 LINE L2 -97 3216 2387 460 276 31 12 chr12 138625089 138625252 -5657237 - MIR SINE MIR -92 170 5 242 260 0 70 chr12 138625430 138625530 -5656959 + CT-rich Low_complexity Low_complexity 1 93 0 1325 234 49 25 chr12 138625673 138626121 -5656368 - L1M4 LINE L1 -757 5389 4931 582 231 12 29 chr12 138626969 138627142 -5655347 + MLT1H LTR MaLR 380 549 0 402 330 93 20 chr12 138627701 138628001 -5654488 + MLT1J2 LTR MaLR 39 360 -90 252 175 0 0 chr12 138628327 138628367 -5654122 - MER50-int LTR ERV1 -7163 42 3 1614 184 24 3 chr12 138628367 138628660 -5653829 - MER50 LTR ERV1 -20 714 416 652 149 44 0 chr12 138628680 138628794 -5653695 + MER50 LTR ERV1 1 119 -615 2236 152 32 2 chr12 138628794 138629196 -5653293 - MER50 LTR ERV1 -320 414 1 653 259 139 32 chr12 138632503 138632686 -5649803 - MER69 DNA AcHobo -3 2523 2361 3323 147 38 0 chr12 138632686 138633218 -5649271 + MER41C LTR ERV1 3 554 0 653 259 139 32 chr12 138633218 138633378 -5649111 - MER69 DNA AcHobo -165 2361 2143 499 295 49 98 chr12 138633591 138633957 -5648532 - MER69 DNA AcHobo -2032 494 147 2361 186 236 93 chr12 138634523 138635415 -5647074 + LTR28 LTR ERV1 1 1020 0 1286 206 26 75 chr12 138636039 138636422 -5646067 - MER67C LTR ERV1 -247 267 18 2084 139 7 3 chr12 138636835 138637137 -5645352 + AluSg SINE Alu 1 303 -7 195 178 22 0 chr12 138637239 138637284 -5645205 - L2 LINE L2 -244 3069 3024 782 161 0 0 chr12 138637885 138638009 -5644480 - FLAM_C SINE Alu -14 129 6 493 319 44 34 chr12 138638316 138638702 -5643787 + L2 LINE L2 2919 3308 -5 347 287 0 0 chr12 138638708 138638802 -5643687 - MIR SINE MIR -57 151 58 235 244 0 0 chr12 138638989 138639034 -5643455 + (TATATG)n Simple_repeat Simple_repeat 5 49 0 1348 171 9 0 chr12 138639085 138639301 -5643188 + AluJb SINE Alu 85 302 -10 203 29 88 0 chr12 138639301 138639335 -5643154 + T-rich Low_complexity Low_complexity 2 38 0 1384 198 40 70 chr12 138641108 138641507 -5640982 + MLT1B LTR MaLR 1 387 -3 232 312 64 28 chr12 138641899 138642008 -5640481 + L2 LINE L2 3143 3255 -17 255 214 18 0 chr12 138642010 138642066 -5640423 + (CA)n Simple_repeat Simple_repeat 2 58 0 1617 280 83 12 chr12 138642157 138642660 -5639829 + MLT1K LTR MaLR 37 575 -13 593 228 106 32 chr12 138643126 138643315 -5639174 + Charlie8 DNA MER1_type 44 246 -2171 2080 123 3 7 chr12 138644255 138644555 -5637934 + AluSc SINE Alu 1 299 -10 526 267 23 8 chr12 138645935 138646066 -5636423 - L2 LINE L2 0 3313 3181 1119 241 40 19 chr12 138646239 138646562 -5635927 + L1MB5 LINE L1 5807 6136 -38 268 268 93 38 chr12 138646571 138646754 -5635735 - L2 LINE L2 -303 3010 2818 303 265 46 33 chr12 138647481 138647632 -5634857 - L1MEc LINE L1 -6201 195 43 652 274 70 41 chr12 138651207 138651692 -5630797 - L1MC4 LINE L1 -507 7301 6919 237 211 14 28 chr12 138651697 138651768 -5630721 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 188 83 0 28 chr12 138651771 138651807 -5630682 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2216 85 3 0 chr12 138651807 138652101 -5630388 - L1PA8 LINE L1 -24 6148 5854 567 0 0 0 chr12 138652101 138652164 -5630325 + (CTATT)n Simple_repeat Simple_repeat 2 64 0 355 139 33 44 chr12 138652216 138652396 -5630093 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1065 267 109 119 chr12 138652452 138652536 -5629953 - L1MC4 LINE L1 -905 6988 6905 934 67 0 0 chr12 138652536 138652655 -5629834 - L1PA5 LINE L1 0 6154 6036 1065 267 109 119 chr12 138652655 138653701 -5628788 - L1MC4 LINE L1 -988 6905 5785 560 217 62 107 chr12 138653748 138653992 -5628497 + MLT1D LTR MaLR 9 241 -301 2202 229 132 34 chr12 138654381 138655065 -5627424 - L1MD2 LINE L1 -26 6333 5583 970 258 83 107 chr12 138656407 138656744 -5625745 - MER77 LTR ERV1 -6 599 271 1260 181 28 4 chr12 138657642 138657891 -5624598 - L1MA7 LINE L1 -352 5939 5685 336 171 76 57 chr12 138657859 138657964 -5624525 + L1MA7 LINE L1 5941 6047 -244 * 539 128 0 142 chr12 138657975 138658056 -5624433 + L1MA7 LINE L1 6160 6214 -77 1708 124 10 78 chr12 138658056 138658362 -5624127 + AluSx SINE Alu 1 285 -27 539 128 0 142 chr12 138658362 138658421 -5624068 + L1MA7 LINE L1 6214 6280 -11 564 276 58 45 chr12 138658806 138658949 -5623540 - Charlie8 DNA MER1_type -1730 687 547 2006 157 0 0 chr12 138658949 138659254 -5623235 - AluSx SINE Alu -7 305 1 564 276 58 45 chr12 138659254 138659422 -5623067 - Charlie8 DNA MER1_type -1870 547 372 182 254 60 0 chr12 138659449 138659516 -5622973 - MIR SINE MIR -9 253 183 799 208 117 71 chr12 138659573 138659990 -5622499 + MLT1C LTR MaLR 1 467 0 705 241 15 88 chr12 138660066 138660269 -5622220 + MLT1D LTR MaLR 252 468 -37 408 20 0 0 chr12 138660269 138660318 -5622171 + (TG)n Simple_repeat Simple_repeat 2 50 0 2519 105 3 21 chr12 138660318 138660691 -5621798 - L1PA13 LINE L1 -6 6157 5792 705 241 15 88 chr12 138660691 138660760 -5621729 + MLT1D LTR MaLR 466 505 0 277 244 24 24 chr12 138660771 138660853 -5621636 - MIR SINE MIR -111 151 70 2029 116 0 17 chr12 138660893 138661215 -5621274 + AluSc SINE Alu 1 309 0 326 244 49 130 chr12 138661261 138661397 -5621092 - Charlie8 DNA MER1_type -100 230 121 1652 152 0 90 chr12 138661397 138661719 -5620770 - AluJo SINE Alu -15 297 5 326 244 49 130 chr12 138661719 138661828 -5620661 - Charlie8 DNA MER1_type -209 121 5 1283 228 110 11 chr12 138661862 138662217 -5620272 - MLT1B LTR MaLR 0 390 1 278 344 94 31 chr12 138662920 138663144 -5619345 + HERV16 LTR ERVL 2584 2821 -2175 285 295 96 24 chr12 138663435 138663601 -5618888 + HERV16 LTR ERVL 3247 3424 -2340 605 265 142 40 chr12 138664409 138664734 -5617755 + LTR16B LTR ERVL 107 464 0 427 303 13 0 chr12 138664855 138665010 -5617479 - MIR SINE MIR -8 254 98 2261 96 0 3 chr12 138665012 138665304 -5617185 + AluSx SINE Alu 13 303 -9 1416 284 43 51 chr12 138666279 138666903 -5615586 + MLT2E LTR ERVL 10 628 0 2280 112 0 3 chr12 138667029 138667341 -5615148 - AluSx SINE Alu -1 311 1 2169 134 116 16 chr12 138667947 138668334 -5614155 - MSTA LTR MaLR -2 426 1 2300 226 18 0 chr12 138668355 138668851 -5613638 - MLT1D LTR MaLR 0 505 1 325 268 62 0 chr12 138669355 138669452 -5613037 - L2 LINE L2 -1 3312 3210 350 304 166 0 chr12 138669460 138669641 -5612848 - L2 LINE L2 -251 3062 2852 288 229 39 21 chr12 138670045 138670152 -5612337 - MLT1J1 LTR MaLR -81 328 225 267 244 17 57 chr12 138672393 138672569 -5609920 + (CGGGG)n Simple_repeat Simple_repeat 1 169 0 1914 124 3 62 chr12 138673655 138673978 -5608511 - AluSx SINE Alu -8 304 1 360 0 0 0 chr12 138673986 138674026 -5608463 + (TG)n Simple_repeat Simple_repeat 2 41 0 1984 139 4 0 chr12 138674039 138674320 -5608169 - AluSx SINE Alu -30 282 1 394 297 88 5 chr12 138674431 138674623 -5607866 - L2 LINE L2 -264 3049 2842 866 260 124 68 chr12 138674652 138674843 -5607646 + MLT1J LTR MaLR 1 180 -331 1503 160 27 0 chr12 138674843 138675105 -5607384 - L1PA16 LINE L1 -1 6165 5897 866 260 124 68 chr12 138675105 138675397 -5607092 + MLT1J LTR MaLR 180 511 0 462 318 63 13 chr12 138675402 138675641 -5606848 - L2 LINE L2 -526 2788 2538 1970 248 37 30 chr12 138675681 138676279 -5606210 - L1ME1 LINE L1 0 6166 5565 290 90 0 146 chr12 138676287 138676376 -5606113 - MADE1 DNA Mariner 0 80 5 1594 140 114 7 chr12 138677838 138678110 -5604379 + AluSg SINE Alu 1 301 -9 2502 81 0 0 chr12 138678580 138678889 -5603600 - AluY SINE Alu -2 309 1 1187 216 85 40 chr12 138678964 138679293 -5603196 - MLT1D LTR MaLR -1 504 161 540 277 134 17 chr12 138679479 138679710 -5602779 + MIR SINE MIR 2 259 -3 1298 195 138 111 chr12 138680831 138681426 -5601063 - LTR36 LTR ERV1 0 611 1 361 222 53 82 chr12 138681805 138681957 -5600532 + MLT1K LTR MaLR 140 273 -342 374 247 192 55 chr12 138682913 138683244 -5599245 - MLT1J2 LTR MaLR 0 446 72 267 314 16 50 chr12 138683917 138684038 -5598451 + L2 LINE L2 2958 3074 -198 1062 154 87 30 chr12 138684309 138684511 -5597978 + L1MA8 LINE L1 6011 6233 -58 417 39 0 0 chr12 138684511 138684562 -5597927 + (TA)n Simple_repeat Simple_repeat 1 51 0 1062 154 87 30 chr12 138684562 138684625 -5597864 + L1MA8 LINE L1 6233 6291 0 376 285 88 52 chr12 138684821 138685014 -5597475 - MLT1J LTR MaLR 0 511 312 310 250 37 0 chr12 138686443 138686551 -5595938 + (TA)n Simple_repeat Simple_repeat 1 112 0 1649 248 14 52 chr12 138686551 138687052 -5595437 - MLT2B1 LTR ERVL -37 483 2 267 324 0 0 chr12 138687295 138687366 -5595123 + MER8 DNA MER2_type 109 179 -60 * 421 172 0 0 chr12 138687341 138687405 -5595084 + MER2 DNA MER2_type 282 345 0 436 274 9 0 chr12 138687833 138687939 -5594550 + MIR SINE MIR 4 110 -152 2680 29 6 0 chr12 138688152 138688465 -5594024 - L1PA4 LINE L1 -163 5992 5678 1374 36 12 0 chr12 138688465 138688633 -5593856 + L1PA4 LINE L1 5984 6153 -2 2270 82 0 28 chr12 138689004 138689329 -5593160 - AluY SINE Alu 0 317 1 3282 69 2 45 chr12 138689486 138689950 -5592539 + MLT2A1 LTR ERVL 1 444 0 240 239 15 15 chr12 138691122 138691189 -5591300 + L2 LINE L2 3237 3303 -10 1879 157 0 25 chr12 138691862 138692180 -5590309 - AluJb SINE Alu -1 311 2 434 257 37 52 chr12 138692598 138692734 -5589755 + MLT1E1 LTR MaLR 20 153 -440 213 328 17 0 chr12 138692757 138692873 -5589616 + (TA)n Simple_repeat Simple_repeat 1 118 0 1228 240 22 57 chr12 138692873 138693239 -5589250 + MLT1E1 LTR MaLR 302 654 0 456 62 0 0 chr12 138693329 138693393 -5589096 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 25 31 0 0 chr12 138693866 138693898 -5588591 + AT_rich Low_complexity Low_complexity 1 32 0 532 235 60 16 chr12 138694082 138694265 -5588224 + L1MCa LINE L1 18 208 -6218 1200 215 86 51 chr12 138694389 138694955 -5587534 + L1M4 LINE L1 4754 5338 -830 1856 166 3 0 chr12 138694955 138695244 -5587245 + AluJb SINE Alu 1 290 -22 1200 215 86 51 chr12 138695244 138695255 -5587234 + L1M4 LINE L1 5338 5347 -821 216 214 0 0 chr12 138695339 138695381 -5587108 + (TA)n Simple_repeat Simple_repeat 2 43 0 234 143 0 41 chr12 138695396 138695445 -5587044 - LTR66 LTR ERVL -170 440 394 25 51 0 0 chr12 138695473 138695512 -5586977 + AT_rich Low_complexity Low_complexity 1 39 0 273 57 0 0 chr12 138695524 138695559 -5586930 + (TA)n Simple_repeat Simple_repeat 1 35 0 238 250 14 28 chr12 138696362 138696434 -5586055 + MER5A DNA MER1_type 64 134 -55 2542 134 43 5 chr12 138696446 138696842 -5585647 + MLT2A1 LTR ERVL 1 411 -33 731 93 45 18 chr12 138696842 138697282 -5585207 + (TA)n Simple_repeat Simple_repeat 1 451 0 233 239 23 0 chr12 138697289 138697377 -5585112 + (TATAA)n Simple_repeat Simple_repeat 5 94 0 341 18 95 53 chr12 138697381 138697550 -5584939 + (TA)n Simple_repeat Simple_repeat 2 177 0 1467 249 84 10 chr12 138697561 138697979 -5584510 + LTR2 LTR ERV1 1 449 0 46715 167 15 17 chr12 138697979 138705807 -5576682 + HERVE LTR ERV1 1 7811 -2 1441 244 85 26 chr12 138705807 138706231 -5576258 + LTR2 LTR ERV1 1 449 0 569 86 82 0 chr12 138706256 138706513 -5575976 + (TA)n Simple_repeat Simple_repeat 1 278 0 208 105 81 12 chr12 138706571 138706577 -5575912 + (TA)n Simple_repeat Simple_repeat 1 5 -87 23 0 0 0 chr12 138706577 138706600 -5575889 + AT_rich Low_complexity Low_complexity 1 23 0 208 105 81 12 chr12 138706600 138706657 -5575832 + (TA)n Simple_repeat Simple_repeat 5 92 0 1328 116 0 0 chr12 138706666 138706847 -5575642 - MLT2A1 LTR ERVL -48 396 216 377 96 75 0 chr12 138706849 138706943 -5575546 + (TA)n Simple_repeat Simple_repeat 1 101 0 271 44 178 0 chr12 138706960 138707005 -5575484 + MLT2A1 LTR ERVL 392 444 0 370 304 18 0 chr12 138707137 138707249 -5575240 - MER81 DNA DNA 0 114 1 191 271 34 0 chr12 138707297 138707356 -5575133 - L2 LINE L2 -6 3307 3247 184 346 16 39 chr12 138707464 138707591 -5574898 - L2 LINE L2 -252 3061 2938 901 196 54 10 chr12 138707705 138707909 -5574580 - MER20 DNA MER1_type -6 213 1 361 300 47 37 chr12 138708353 138708543 -5573946 - MIR SINE MIR 0 262 71 261 337 0 11 chr12 138708506 138708598 -5573891 + MIR SINE MIR 167 257 -5 * 1417 241 107 67 chr12 138709519 138709748 -5572741 - L1ME3A LINE L1 -20 6150 5932 2664 99 36 6 chr12 138709748 138710112 -5572377 - THE1C LTR MaLR 0 375 1 1417 241 107 67 chr12 138710112 138710362 -5572127 - L1ME3A LINE L1 -238 5932 5693 207 0 0 0 chr12 138710362 138710385 -5572104 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1417 241 107 67 chr12 138710385 138710425 -5572064 - L1ME3A LINE L1 -477 5693 5656 2098 215 65 4 chr12 138710425 138710899 -5571590 - MLT1D LTR MaLR -2 503 1 1417 241 107 67 chr12 138710899 138711050 -5571439 - L1ME3A LINE L1 -514 5656 5451 330 26 0 0 chr12 138713429 138713448 -5569041 + (TG)n Simple_repeat Simple_repeat 1 58 0 330 26 0 0 chr12 138713448 138713487 -5569002 + (TG)n Simple_repeat Simple_repeat 2 40 0 263 234 0 39 chr12 138713557 138713634 -5568855 + (TATG)n Simple_repeat Simple_repeat 1 74 0 202 216 0 0 chr12 138713700 138713737 -5568752 + (CATA)n Simple_repeat Simple_repeat 3 39 0 186 179 34 17 chr12 138714168 138714285 -5568204 + (TA)n Simple_repeat Simple_repeat 2 120 0 348 247 21 0 chr12 138714336 138714433 -5568056 - L1MC4 LINE L1 -8 8034 7936 1831 200 52 33 chr12 138714488 138714969 -5567520 + L1MA9 LINE L1 5787 6276 -36 238 319 11 11 chr12 138714983 138715074 -5567415 + L1MC/D LINE L1 5771 5861 -1947 1729 125 34 47 chr12 138715129 138715425 -5567064 + AluJo SINE Alu 1 292 -20 1301 229 39 101 chr12 138715467 138715620 -5566869 - L1MD3 LINE L1 -490 7505 7344 1537 200 13 13 chr12 138715620 138715920 -5566569 + AluJb SINE Alu 1 300 -12 1301 229 39 101 chr12 138715920 138716134 -5566355 - L1MD3 LINE L1 -651 7344 7118 1460 248 48 6 chr12 138716134 138716489 -5566000 + MLT1A2 LTR MaLR 5 374 0 1301 229 39 101 chr12 138716489 138716741 -5565748 - L1MD3 LINE L1 -877 7118 6828 1722 212 56 21 chr12 138717198 138717628 -5564861 + MER65A LTR ERV1 1 445 0 807 321 53 11 chr12 138718169 138718546 -5563943 - MLT1L LTR MaLR 0 615 223 582 289 115 45 chr12 138718846 138719133 -5563356 - MLT1K LTR MaLR -91 497 191 2011 132 3 16 chr12 138719526 138719837 -5562652 + AluSx SINE Alu 1 307 -5 465 310 122 43 chr12 138720509 138720667 -5561822 - L1ME LINE L1 -469 5701 5557 1839 132 43 0 chr12 138720667 138720947 -5561542 - AluSx SINE Alu -20 292 1 465 310 122 43 chr12 138720947 138721117 -5561372 - L1ME LINE L1 -613 5557 5347 183 80 0 0 chr12 138721793 138721818 -5560671 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 248 222 0 32 chr12 138722315 138722378 -5560111 + T-rich Low_complexity Low_complexity 5 65 0 816 93 0 37 chr12 138722386 138722547 -5559942 + (TTCC)n Simple_repeat Simple_repeat 1 155 0 190 238 0 0 chr12 138722971 138723013 -5559476 + MIR SINE MIR 220 261 -1 996 270 39 30 chr12 138723365 138723702 -5558787 - MER92C LTR ERV1 -2 552 213 2308 77 7 20 chr12 138723715 138724014 -5558475 + AluY SINE Alu 1 295 -16 216 0 0 0 chr12 138724123 138724147 -5558342 + (T)n Simple_repeat Simple_repeat 1 24 0 359 297 64 63 chr12 138724710 138724955 -5557534 + MIR SINE MIR 12 262 0 3266 132 30 75 chr12 138725099 138725722 -5556767 + L1MA5A LINE L1 5702 6296 -1 216 0 0 0 chr12 138726650 138726674 -5555815 + (CA)n Simple_repeat Simple_repeat 2 25 0 273 250 83 10 chr12 138727311 138727407 -5555082 - MLT1L LTR MaLR -21 594 492 446 356 36 49 chr12 138727574 138727821 -5554668 - MLT1K LTR MaLR -342 246 3 2175 279 39 65 chr12 138728077 138729260 -5553229 + L1MEc LINE L1 8 1159 -5237 334 207 0 18 chr12 138729260 138729371 -5553118 + (TA)n Simple_repeat Simple_repeat 1 109 0 652 301 105 53 chr12 138729383 138729965 -5552524 + L1MEc LINE L1 1204 1815 -4581 1817 110 11 4 chr12 138730054 138730318 -5552171 + AluSx SINE Alu 1 266 -46 279 275 18 9 chr12 138731594 138731703 -5550786 + (TA)n Simple_repeat Simple_repeat 1 110 0 1208 261 22 67 chr12 138731703 138732208 -5550281 - MLT2B1 LTR ERVL -37 483 2 282 266 0 0 chr12 138732496 138732560 -5549929 + MER2 DNA MER2_type 282 345 0 813 293 40 47 chr12 138732864 138733288 -5549201 - L1MB8 LINE L1 -14 6164 5744 1528 223 6 14 chr12 138734000 138734354 -5548135 - L1MB7 LINE L1 -324 5860 5510 900 184 131 19 chr12 138734922 138735128 -5547361 + MER30 DNA MER1_type 2 230 0 1684 148 0 7 chr12 138735822 138736106 -5546383 - AluSx SINE Alu -17 295 14 341 355 13 0 chr12 138736109 138736264 -5546225 + MIR SINE MIR 98 254 -8 1858 296 55 26 chr12 138736845 138737680 -5544809 - L1MEc LINE L1 -5530 866 8 864 232 18 13 chr12 138738067 138738291 -5544198 + MER4E LTR ERV1 542 766 0 910 265 16 19 chr12 138738643 138738900 -5543589 - AluSx SINE Alu -19 293 38 924 155 0 7 chr12 138740326 138740481 -5542008 - L1PA8 LINE L1 -3 6169 6016 301 310 0 11 chr12 138741491 138741578 -5540911 - MLT1K LTR MaLR -358 230 145 6714 191 21 38 chr12 138741800 138743254 -5539235 - HERVE LTR ERV1 -5741 2072 643 5462 114 2 10 chr12 138743354 138744155 -5538334 + L1PA5 LINE L1 5349 6143 -11 546 291 0 14 chr12 138744230 138744440 -5538049 + AluSq SINE Alu 7 213 -100 497 297 105 9 chr12 138744607 138744886 -5537603 - MLT1G1 LTR MaLR -291 304 1 816 258 4 19 chr12 138746942 138747198 -5535291 - AluJo SINE Alu 0 312 61 909 238 0 21 chr12 138747542 138747823 -5534666 + AluSp SINE Alu 1 275 -38 2745 231 23 19 chr12 138747999 138748696 -5533793 + MER67C LTR ERV1 11 710 0 1835 161 0 0 chr12 138749263 138749537 -5532952 - AluSx SINE Alu -5 307 34 206 338 95 0 chr12 138749801 138749875 -5532614 + L2 LINE L2 3190 3270 -2 2744 186 25 63 chr12 138749920 138750556 -5531933 + LTR9 LTR ERV1 1 612 0 2001 262 31 19 chr12 138750881 138751499 -5530990 + L1MC4a LINE L1 7183 7807 -1 2006 118 25 0 chr12 138751503 138751825 -5530664 + AluSx SINE Alu 1 329 0 1530 164 0 12 chr12 138753592 138753848 -5528641 - AluJo SINE Alu 0 312 60 220 369 27 36 chr12 138754509 138754620 -5527869 + MIR SINE MIR 35 144 -118 607 304 150 26 chr12 138754633 138754972 -5527517 - L2 LINE L2 -21 3292 2912 2688 117 15 74 chr12 138755127 138755587 -5526902 - Tigger2a DNA MER2_type 0 434 2 5938 74 3 6 chr12 138755753 138756481 -5526008 - L1PA10 LINE L1 -4 6164 5439 383 222 71 0 chr12 138756991 138757090 -5525399 + MER69 DNA AcHobo 2015 2120 -406 * 632 263 111 4 chr12 138757079 138757341 -5525148 + MER69 DNA AcHobo 2233 2522 -4 267 281 76 42 chr12 138757640 138757797 -5524692 + MIR SINE MIR 52 220 -42 599 335 55 14 chr12 138757854 138758147 -5524342 + L2 LINE L2 3009 3313 0 2240 85 3 57 chr12 138758315 138758632 -5523857 - AluSq SINE Alu -13 300 1 284 212 0 0 chr12 138759723 138759789 -5522700 - MIR SINE MIR -118 144 79 406 342 7 13 chr12 138759789 138759938 -5522551 - MLT1K LTR MaLR -153 435 288 579 262 30 0 chr12 138759983 138760185 -5522304 + L1MC4 LINE L1 7686 7893 -149 2078 144 50 14 chr12 138760524 138760886 -5521603 + THE1C LTR MaLR 1 375 0 240 320 13 0 chr12 138761055 138761130 -5521359 + MIR SINE MIR 183 258 -4 348 24 0 0 chr12 138762289 138762330 -5520159 + (CA)n Simple_repeat Simple_repeat 2 42 0 1655 176 3 35 chr12 138762923 138763235 -5519254 + AluJo SINE Alu 1 302 -10 578 217 106 63 chr12 138763572 138763779 -5518710 - L1MC4 LINE L1 -1339 6703 6488 419 267 17 0 chr12 138763781 138763897 -5518592 - L1M4 LINE L1 -2286 3860 3743 286 109 0 0 chr12 138763902 138763948 -5518541 + MADE1 DNA Mariner 1 46 -34 498 206 20 41 chr12 138763953 138764099 -5518390 - L1M4 LINE L1 -2414 3732 3590 568 203 139 13 chr12 138764119 138764277 -5518212 + MER5A DNA MER1_type 7 184 -5 479 293 108 0 chr12 138764305 138764462 -5518027 + MER5B DNA MER1_type 4 177 -1 315 246 239 8 chr12 138764462 138764591 -5517898 - MIR SINE MIR -67 195 37 822 217 77 135 chr12 138766078 138766492 -5515997 + MLT1B LTR MaLR 1 390 0 2633 134 53 12 chr12 138766735 138767146 -5515343 - MSTA LTR MaLR 0 428 1 1544 254 44 0 chr12 138767225 138767567 -5514922 + MLT1A1 LTR MaLR 1 357 -8 388 136 34 80 chr12 138767901 138767989 -5514500 - MLT1A1 LTR MaLR -46 319 236 667 117 19 0 chr12 138767990 138768093 -5514396 - L1MA9 LINE L1 -188 6124 6020 311 294 141 45 chr12 138768082 138768436 -5514053 - L1MC4 LINE L1 -1914 5894 5507 * 325 225 84 0 chr12 138769383 138769454 -5513035 - MSTA LTR MaLR -214 214 138 904 116 53 85 chr12 138769555 138769744 -5512745 - L1MA9 LINE L1 0 6312 6130 706 190 1 9 chr12 138769808 138769940 -5512549 - MLT1A1 LTR MaLR -5 500 236 1028 194 27 18 chr12 138769941 138770163 -5512326 - L1MA9 LINE L1 -188 6124 5901 1082 181 201 0 chr12 138770239 138770493 -5511996 + L1MB3 LINE L1 5879 6183 0 1964 169 21 1 chr12 138771027 138771542 -5510947 - L1P4 LINE L1 -673 5492 4967 3139 134 21 21 chr12 138771542 138772026 -5510463 + MER1A DNA MER1_type 1 484 -45 4193 223 15 13 chr12 138772218 138772518 -5509971 - L1P LINE L1 -877 5269 4971 2863 196 11 17 chr12 138772518 138773048 -5509441 + MER1A DNA MER1_type 1 527 0 4193 223 15 13 chr12 138773048 138773741 -5508748 - L1P LINE L1 -1175 4971 4274 4305 128 29 11 chr12 138773744 138774392 -5508097 + L1PA15 LINE L1 5501 6160 -5 309 241 54 84 chr12 138775954 138776120 -5506369 + MIR SINE MIR 40 200 -62 703 101 0 10 chr12 138776378 138776477 -5506012 + MER4A LTR ERV1 1 98 -566 1843 157 3 19 chr12 138776477 138776828 -5505661 + MER4A LTR ERV1 261 664 0 1455 227 30 51 chr12 138776984 138777416 -5505073 - L1MB8 LINE L1 -13 6165 5743 463 306 73 20 chr12 138777718 138778061 -5504428 - HAL1b LINE L1 0 1348 988 2165 52 84 25 chr12 138778071 138778357 -5504132 + AluY SINE Alu 1 303 -8 430 284 123 37 chr12 138778496 138778719 -5503770 - HAL1b LINE L1 -413 935 688 2248 144 47 8 chr12 138778719 138779080 -5503409 - THE1C LTR MaLR 0 375 1 430 284 123 37 chr12 138779080 138779099 -5503390 - HAL1b LINE L1 -660 688 672 1341 276 126 40 chr12 138779502 138780050 -5502439 - MLT1G1 LTR MaLR 0 595 1 2126 227 49 33 chr12 138781367 138781998 -5500491 - L1MB7 LINE L1 -60 6124 5484 548 281 49 42 chr12 138782271 138782577 -5499912 + L1MC4a LINE L1 5623 5930 -1878 310 270 79 0 chr12 138782736 138782825 -5499664 - L1MC4 LINE L1 -1334 6708 6613 196 200 31 0 chr12 138782825 138782890 -5499599 + (TA)n Simple_repeat Simple_repeat 2 68 0 318 178 0 109 chr12 138782909 138783010 -5499479 - L1MC4 LINE L1 -1339 6703 6614 592 178 6 22 chr12 138783021 138783201 -5499288 + (TA)n Simple_repeat Simple_repeat 2 178 0 382 219 0 27 chr12 138783228 138783411 -5499078 + (TA)n Simple_repeat Simple_repeat 2 179 0 300 224 0 33 chr12 138783436 138783619 -5498870 + (TA)n Simple_repeat Simple_repeat 2 178 0 297 227 0 32 chr12 138783634 138783819 -5498670 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 319 251 23 0 chr12 138783779 138784044 -5498445 + (CATATA)n Simple_repeat Simple_repeat 1 271 0 217 246 0 27 chr12 138784046 138784229 -5498260 + (TA)n Simple_repeat Simple_repeat 2 179 0 217 246 0 27 chr12 138784256 138784439 -5498050 + (TA)n Simple_repeat Simple_repeat 2 179 0 244 217 0 0 chr12 138784452 138784512 -5497977 + L1MCa LINE L1 2007 2066 -4360 239 140 20 0 chr12 138784512 138784562 -5497927 + (TA)n Simple_repeat Simple_repeat 2 52 0 499 178 0 0 chr12 138785691 138785781 -5496708 + MIR SINE MIR 46 135 -127 337 269 56 42 chr12 138786178 138786379 -5496110 - MIR SINE MIR -49 213 12 229 273 13 13 chr12 138786312 138786389 -5496100 + MIR SINE MIR 75 151 -111 * 503 231 29 75 chr12 138787059 138787232 -5495257 + L1ME1 LINE L1 5308 5472 -694 1112 95 0 7 chr12 138787242 138787389 -5495100 + AluY SINE Alu 1 146 -165 25 0 0 0 chr12 138787397 138787422 -5495067 + AT_rich Low_complexity Low_complexity 1 25 0 1200 237 69 96 chr12 138787423 138787976 -5494513 + L1ME1 LINE L1 5490 6027 -139 1933 85 0 0 chr12 138787977 138788212 -5494277 - AluSx SINE Alu -14 298 64 22 0 0 0 chr12 138788235 138788257 -5494232 + AT_rich Low_complexity Low_complexity 1 22 0 2835 180 27 36 chr12 138788265 138788821 -5493668 - L1PA16 LINE L1 -37 6129 5579 581 266 60 40 chr12 138789584 138789681 -5492808 + MIR SINE MIR 6 100 -162 2323 154 22 0 chr12 138789681 138790037 -5492452 - THE1B LTR MaLR 0 364 1 581 266 60 40 chr12 138790037 138790187 -5492302 + MIR SINE MIR 100 258 -4 1768 187 59 126 chr12 138790436 138790977 -5491512 - MLT1D LTR MaLR 0 505 1 742 270 10 76 chr12 138791583 138791887 -5490602 + MLT1J LTR MaLR 226 509 -2 2671 48 0 0 chr12 138792038 138792349 -5490140 - AluY SINE Alu 0 311 1 282 311 0 28 chr12 138792474 138792580 -5489909 + MIR SINE MIR 140 242 -20 448 245 119 6 chr12 138792848 138793007 -5489482 - MIR SINE MIR -23 239 63 207 0 0 0 chr12 138793141 138793164 -5489325 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2295 99 0 0 chr12 138793167 138793461 -5489028 - AluSc SINE Alu -15 294 1 26 0 0 0 chr12 138793536 138793562 -5488927 + AT_rich Low_complexity Low_complexity 1 26 0 389 310 74 15 chr12 138794122 138794380 -5488109 + L2 LINE L2 1950 3067 -246 249 302 134 13 chr12 138795061 138795210 -5487279 - LTR16C LTR ERVL -91 400 234 302 227 113 80 chr12 138795328 138795478 -5487011 - Charlie4 DNA MER1_type -1803 158 4 2100 129 0 19 chr12 138796051 138796369 -5486120 + AluSx SINE Alu 1 312 0 444 283 80 84 chr12 138796589 138796840 -5485649 + MLT1K LTR MaLR 333 582 -6 293 271 73 10 chr12 138796931 138797027 -5485462 - MIR3 SINE MIR -30 178 77 33 0 0 0 chr12 138797516 138797549 -5484940 + AT_rich Low_complexity Low_complexity 1 33 0 811 309 33 45 chr12 138797686 138798160 -5484329 - L2 LINE L2 -243 3029 2556 2836 78 13 19 chr12 138799023 138799397 -5483092 + THE1C LTR MaLR 1 372 -3 562 318 112 32 chr12 138799607 138800044 -5482445 - L1ME LINE L1 -303 5818 5347 826 299 24 33 chr12 138800139 138800470 -5482019 - L2 LINE L2 -4 3309 2982 180 0 0 0 chr12 138800470 138800490 -5481999 + (TA)n Simple_repeat Simple_repeat 2 21 0 231 120 0 20 chr12 138800523 138800573 -5481916 - L1MCa LINE L1 -4362 2064 2016 1926 140 20 13 chr12 138800587 138800887 -5481602 - AluSx SINE Alu -10 302 1 611 210 65 54 chr12 138801280 138801466 -5481023 - MER20 DNA MER1_type 0 219 32 303 274 48 24 chr12 138802162 138802246 -5480243 + MER91B DNA MER1_type 102 187 -3 394 281 30 15 chr12 138802684 138802819 -5479670 - MER113 DNA MER1_type? -79 442 306 599 246 126 0 chr12 138802857 138803032 -5479457 - L1MD2 LINE L1 -9 6350 6154 339 306 9 26 chr12 138803629 138803857 -5478632 + CT-rich Low_complexity Low_complexity 1 223 0 787 112 28 17 chr12 138804051 138804229 -5478260 + CT-rich Low_complexity Low_complexity 1 180 0 444 321 32 54 chr12 138804377 138804692 -5477797 + L2 LINE L2 2839 3146 -167 26 0 0 0 chr12 138805041 138805067 -5477422 + AT_rich Low_complexity Low_complexity 1 26 0 2162 116 0 3 chr12 138805076 138805379 -5477110 - AluSx SINE Alu -10 302 1 7672 50 20 0 chr12 138805439 138806390 -5476099 - L1PA6 LINE L1 0 6154 5199 2313 85 0 13 chr12 138806537 138806842 -5475647 - AluY SINE Alu -10 301 1 313 332 71 41 chr12 138807327 138807667 -5474822 + L2 LINE L2 2964 3313 0 235 200 0 0 chr12 138807928 138807983 -5474506 + L1MD2 LINE L1 6105 6159 -200 1153 96 11 0 chr12 138808149 138808327 -5474162 + (GA)n Simple_repeat Simple_repeat 1 180 0 277 156 0 0 chr12 138809031 138809076 -5473413 - MIR SINE MIR -13 249 205 200 139 0 23 chr12 138809078 138809121 -5473368 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 342 265 48 149 chr12 138809167 138809582 -5472907 - L2 LINE L2 0 3272 2900 717 164 15 24 chr12 138809621 138809960 -5472529 + GA-rich Low_complexity Low_complexity 1 336 0 274 305 26 44 chr12 138809988 138810135 -5472354 + MIR SINE MIR 33 179 -71 1501 133 165 16 chr12 138811300 138811419 -5471070 + AluJo SINE Alu 1 101 -201 216 0 0 0 chr12 138811419 138811443 -5471046 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1501 133 165 16 chr12 138811443 138811572 -5470917 + AluJo SINE Alu 101 286 -16 366 156 0 0 chr12 138811572 138811636 -5470853 + GA-rich Low_complexity Low_complexity 1 64 0 261 0 0 0 chr12 138811700 138811729 -5470760 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 2034 103 11 4 chr12 138811731 138812012 -5470477 - AluSq SINE Alu -30 283 1 850 82 8 15 chr12 138812864 138812998 -5469491 + (TTTC)n Simple_repeat Simple_repeat 3 135 0 2075 118 0 0 chr12 138813003 138813282 -5469207 - AluSx SINE Alu -33 279 1 289 336 15 0 chr12 138813456 138813587 -5468902 + CT-rich Low_complexity Low_complexity 2 134 0 * 377 292 30 6 chr12 138813510 138813678 -5468811 + (TCTCTG)n Simple_repeat Simple_repeat 3 174 0 225 280 27 0 chr12 138813694 138813769 -5468720 + (TCTCTG)n Simple_repeat Simple_repeat 3 79 0 1533 231 101 40 chr12 138814428 138814904 -5467585 - MLT1D LTR MaLR 0 505 1 752 225 18 35 chr12 138814995 138815164 -5467325 + MLT1A2 LTR MaLR 3 168 -206 703 121 186 0 chr12 138815173 138815297 -5467192 + MLT1A2 LTR MaLR 282 428 0 208 272 41 36 chr12 138815348 138815519 -5466970 - MIR3 SINE MIR -89 173 3 959 243 72 72 chr12 138817289 138817680 -5464809 - MLT2C1 LTR ERVL 0 397 7 196 292 0 21 chr12 138817834 138817882 -5464607 - L2 LINE L2 -18 3295 3249 227 250 190 50 chr12 138818115 138818215 -5464274 + L2 LINE L2 3158 3271 -1 328 343 34 7 chr12 138818919 138819065 -5463424 + MIR SINE MIR 8 157 -105 191 320 290 0 chr12 138819536 138819636 -5462853 + L2 LINE L2 3144 3272 0 616 265 64 25 chr12 138819965 138820169 -5462320 - MIR SINE MIR -21 241 30 565 172 0 30 chr12 138820649 138820748 -5461741 + FLAM_C SINE Alu 33 128 -15 742 265 135 89 chr12 138820755 138821272 -5461217 - MLT1K LTR MaLR -15 573 33 1276 214 57 0 chr12 138821755 138822073 -5460416 - MER45B DNA AcHobo 0 1040 705 2087 121 13 0 chr12 138822082 138822388 -5460101 - AluSx SINE Alu -2 310 1 2222 269 56 41 chr12 138822388 138823537 -5458952 - L1M4c LINE L1 -2572 4072 2963 1859 129 0 4 chr12 138823537 138823800 -5458689 + AluSx SINE Alu 34 295 -17 2222 269 56 41 chr12 138823800 138824103 -5458386 - L1M4c LINE L1 -3681 2963 2666 432 245 7 82 chr12 138824104 138824251 -5458238 - L1M4c LINE L1 -4645 2001 1866 788 244 0 56 chr12 138824293 138824527 -5457962 - L1M4c LINE L1 -5479 1063 843 2132 123 3 0 chr12 138824529 138824821 -5457668 + AluSx SINE Alu 5 297 -15 207 0 0 0 chr12 138824824 138824847 -5457642 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 469 267 111 6 chr12 138824960 138825140 -5457349 + MIR SINE MIR 41 239 -23 230 246 0 43 chr12 138825408 138825477 -5457012 - MIR SINE MIR -20 242 177 293 271 73 10 chr12 138825773 138825869 -5456620 + MIR3 SINE MIR 77 178 -30 444 283 80 84 chr12 138825960 138826211 -5456278 - MLT1K LTR MaLR -6 582 333 2066 132 0 19 chr12 138826431 138826749 -5455740 - AluSx SINE Alu 0 312 1 302 227 113 80 chr12 138827322 138827472 -5455017 + Charlie4 DNA MER1_type 4 158 -1803 269 295 134 13 chr12 138827590 138827739 -5454750 + LTR16C LTR ERVL 234 400 -91 389 310 74 15 chr12 138828420 138828678 -5453811 - L2 LINE L2 -246 3067 1950 26 0 0 0 chr12 138829238 138829264 -5453225 + AT_rich Low_complexity Low_complexity 1 26 0 2282 101 0 35 chr12 138829338 138829655 -5452834 + AluSg SINE Alu 1 306 -4 305 205 123 57 chr12 138830748 138830870 -5451619 - MER117 DNA MER1_type -54 143 14 354 310 102 39 chr12 138831059 138831161 -5451328 + MER102b DNA MER1_type 1 95 -1333 1238 71 0 7 chr12 138831161 138831316 -5451173 + L1PA8 LINE L1 6016 6169 -3 354 310 102 39 chr12 138831316 138831497 -5450992 + MER102b DNA MER1_type 95 302 -39 334 207 0 18 chr12 138831970 138832081 -5450408 + (TA)n Simple_repeat Simple_repeat 2 110 0 270 115 16 49 chr12 138832283 138832344 -5450145 + (TAA)n Simple_repeat Simple_repeat 1 59 0 1443 294 43 32 chr12 138832347 138832997 -5449492 - L1MEc LINE L1 -5473 1352 696 364 98 0 0 chr12 138833536 138833587 -5448902 + AluY SINE Alu 172 222 -79 556 99 0 0 chr12 138833587 138833658 -5448831 - AluY SINE Alu -197 114 44 3306 126 32 16 chr12 138833690 138834182 -5448307 - L1PA15 LINE L1 -14 6151 5652 1478 252 25 31 chr12 138834182 138834887 -5447602 - L1MEc LINE L1 -5707 835 30 301 356 108 21 chr12 138835972 138836390 -5446099 - MLT1K LTR MaLR -1 587 134 547 334 28 9 chr12 138836576 138836828 -5445661 - MIR SINE MIR -1 261 5 188 318 106 0 chr12 138836843 138836928 -5445561 + MIR SINE MIR 42 135 -73 247 328 59 17 chr12 138838147 138838266 -5444223 + MIR SINE MIR 21 144 -118 240 227 0 15 chr12 138838919 138838985 -5443504 + A-rich Low_complexity Low_complexity 3 67 0 839 195 31 36 chr12 138839644 138839839 -5442650 - MER20 DNA MER1_type -25 194 1 2984 176 22 61 chr12 138840222 138840859 -5441630 - LTR9 LTR ERV1 0 612 1 206 338 95 0 chr12 138840904 138840978 -5441511 - L2 LINE L2 -2 3270 3190 1988 131 0 0 chr12 138841242 138841516 -5440973 + AluSx SINE Alu 34 307 -5 2756 132 25 32 chr12 138841855 138842469 -5440020 - MER4E LTR ERV1 0 766 1 1259 117 126 15 chr12 138842653 138842859 -5439630 - MER30 DNA MER1_type 0 230 2 187 361 68 30 chr12 138842897 138843030 -5439459 + L2 LINE L2 3158 3295 -18 2093 218 22 8 chr12 138843406 138843894 -5438595 + L1MB8 LINE L1 5486 5935 -243 2238 109 0 0 chr12 138843894 138844188 -5438301 + AluSx SINE Alu 1 294 -18 2085 106 0 31 chr12 138844209 138844501 -5437988 + AluSg SINE Alu 11 293 -17 305 205 123 57 chr12 138845594 138845716 -5436773 - MER117 DNA MER1_type -54 143 14 354 316 66 35 chr12 138845905 138846007 -5436482 + Charlie8 DNA MER1_type 1 98 -243 1238 71 0 7 chr12 138846007 138846162 -5436327 + L1PA8 LINE L1 6016 6169 -3 354 316 66 35 chr12 138846162 138846315 -5436174 + Charlie8 DNA MER1_type 98 264 -77 2619 111 8 3 chr12 138847601 138847954 -5434535 + THE1A LTR MaLR 1 355 0 3613 189 20 11 chr12 138848287 138848985 -5433504 - MER67C LTR ERV1 0 710 7 2146 95 4 0 chr12 138849157 138849431 -5433058 - AluSp SINE Alu -38 275 1 254 292 37 50 chr12 138849633 138849794 -5432695 - L2 LINE L2 -144 3169 3011 552 277 167 24 chr12 138849794 138850177 -5432312 - MLT1L LTR MaLR 0 615 178 212 245 57 0 chr12 138850345 138850398 -5432091 - L2 LINE L2 -329 2984 2929 298 386 25 28 chr12 138850406 138850800 -5431689 + ERVL LTR ERVL 2397 2789 -2975 1987 190 11 16 chr12 138851288 138851652 -5430837 + MLT1A1 LTR MaLR 1 362 -3 415 280 104 34 chr12 138852294 138852562 -5429927 - L2 LINE L2 -779 2535 2249 3850 131 68 12 chr12 138852826 138854182 -5428307 - L1PA13 LINE L1 -10 6153 4551 228 86 0 0 chr12 138854674 138854709 -5427780 + (CA)n Simple_repeat Simple_repeat 2 36 0 404 283 8 0 chr12 138855376 138855496 -5426993 + MIR SINE MIR 86 206 -56 346 358 57 6 chr12 138855690 138855866 -5426623 + MIR SINE MIR 16 200 -62 2075 100 50 0 chr12 138855941 138856220 -5426269 - AluSq SINE Alu -20 293 1 4275 211 58 42 chr12 138856252 138857411 -5425078 - L1MC3 LINE L1 -229 7556 6380 745 90 0 0 chr12 138857425 138857514 -5424975 - AluSg/x SINE Alu -17 292 204 236 163 23 0 chr12 138857514 138857557 -5424932 + LTR21A LTR ERV1 3 46 -459 1881 129 100 86 chr12 138857557 138858001 -5424488 + LTR21A LTR ERV1 13 421 -17 522 167 60 0 chr12 138858001 138858085 -5424404 - AluSc SINE Alu -76 233 145 269 211 0 0 chr12 138858085 138858137 -5424352 + LTR30 LTR ERV1 1 52 -670 336 123 77 5 chr12 138858137 138858205 -5424284 + LTR12 LTR ERV1 187 234 -480 349 184 118 78 chr12 138858290 138858420 -5424069 + LTR30 LTR ERV1 524 723 -71 * 677 140 0 0 chr12 138858410 138858510 -5423979 + LTR12 LTR ERV1 615 714 0 34487 113 12 13 chr12 138858529 138864360 -5418129 + HERV9 LTR ERV1 54 5954 -2445 7623 96 5 18 chr12 138864347 138865416 -5417073 + HERV9 LTR ERV1 7345 8399 0 * 265 211 0 0 chr12 138865416 138865468 -5417021 + LTR30 LTR ERV1 1 52 -670 855 137 44 109 chr12 138865468 138865716 -5416773 + LTR12 LTR ERV1 53 284 -430 305 220 33 22 chr12 138865717 138865808 -5416681 + LTR30 LTR ERV1 552 643 -79 442 153 212 0 chr12 138865809 138865894 -5416595 + LTR12 LTR ERV1 481 583 -131 626 185 15 23 chr12 138865909 138866039 -5416450 - FLAM_C SINE Alu -2 131 3 272 346 10 0 chr12 138866108 138866212 -5416277 - MIR SINE MIR -53 209 105 644 256 5 50 chr12 138866266 138866401 -5416088 - MER58A DNA MER1_type -2202 218 93 3056 97 12 0 chr12 138866401 138866824 -5415665 + L1PA13 LINE L1 5736 6163 0 644 256 5 50 chr12 138866824 138866887 -5415602 - MER58A DNA MER1_type -2327 93 29 792 83 9 0 chr12 138867057 138867166 -5415323 - HY1 scRNA scRNA -2 110 1 2147 127 0 10 chr12 138867340 138867648 -5414841 - AluSx SINE Alu -7 305 1 305 245 140 56 chr12 138868004 138868147 -5414342 + Charlie8 DNA MER1_type 19 173 -2244 191 350 38 56 chr12 138868998 138869093 -5413396 - MIR SINE MIR -1 261 169 4714 176 82 35 chr12 138869093 138870067 -5412422 - LTR28 LTR ERV1 0 1020 1 191 350 38 56 chr12 138870067 138870131 -5412358 - MIR SINE MIR -93 169 105 764 260 53 10 chr12 138870185 138870393 -5412096 - MER58A DNA MER1_type -6 218 2 869 150 46 0 chr12 138870662 138870835 -5411654 - LTR36 LTR ERV1 -430 181 1 630 202 28 28 chr12 138870871 138871049 -5411440 - MER5B DNA MER1_type 0 178 1 3169 93 7 7 chr12 138871228 138871670 -5410819 + MER41B LTR ERV1 1 442 -193 3436 128 55 43 chr12 138872434 138873037 -5409452 - MER4B LTR ERV1 0 610 1 355 246 194 19 chr12 138873962 138874173 -5408316 - MER2 DNA MER2_type 0 345 98 854 167 7 0 chr12 138874191 138874329 -5408160 - MER2 DNA MER2_type -201 144 6 1970 137 3 0 chr12 138875393 138875692 -5406797 - L1PA14 LINE L1 -5 6156 5857 382 257 18 9 chr12 138878156 138878265 -5404224 - L1 LINE L1 -991 5155 5046 191 103 26 0 chr12 138878278 138878317 -5404172 + A-rich Low_complexity Low_complexity 4 43 0 545 144 10 0 chr12 138879693 138879797 -5402692 + (TG)n Simple_repeat Simple_repeat 2 106 0 480 282 23 11 chr12 138879820 138879994 -5402495 + (TG)n Simple_repeat Simple_repeat 1 176 0 22 56 0 0 chr12 138881079 138881115 -5401374 + AT_rich Low_complexity Low_complexity 1 36 0 758 283 62 103 chr12 138883310 138883861 -5398628 - MER77 LTR ERV1 -17 588 61 223 317 135 0 chr12 138884317 138884421 -5398068 - MIR SINE MIR -64 144 27 26 30 0 0 chr12 138885829 138885862 -5396627 + AT_rich Low_complexity Low_complexity 1 33 0 282 349 30 44 chr12 138886080 138886375 -5396114 - MLT1L LTR MaLR -122 493 203 1804 132 8 0 chr12 138886756 138887043 -5395446 - AluSx SINE Alu 0 318 30 525 222 45 40 chr12 138887980 138888156 -5394333 + MLT1L LTR MaLR 93 269 -346 638 292 29 47 chr12 138888516 138888790 -5393699 + MER113 DNA MER1_type? 250 518 -3 685 226 55 120 chr12 138889306 138889339 -5393150 + MER113 DNA MER1_type? 2 36 -485 1995 93 65 17 chr12 138889339 138889630 -5392859 - AluSx SINE Alu -3 309 5 685 226 55 120 chr12 138889630 138890007 -5392482 + MER113 DNA MER1_type? 36 375 -146 2346 125 54 65 chr12 138890007 138890471 -5392018 + LTR46 LTR ERV1 2 460 0 685 226 55 120 chr12 138890471 138890569 -5391920 + MER113 DNA MER1_type? 375 478 -43 515 267 28 65 chr12 138890634 138890770 -5391719 + MLT1L LTR MaLR 111 236 -379 2800 87 19 0 chr12 138890770 138891140 -5391349 + MER51B LTR ERV1 1 377 0 515 267 28 65 chr12 138891140 138891250 -5391239 + MLT1L LTR MaLR 236 348 -267 309 26 0 0 chr12 138891347 138891385 -5391104 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2169 83 14 11 chr12 138891387 138891665 -5390824 - AluY SINE Alu -31 280 2 2771 96 30 10 chr12 138891759 138892153 -5390336 - MER4A LTR ERV1 0 664 263 560 174 0 0 chr12 138892153 138892251 -5390238 - MER4A LTR ERV1 -566 98 1 308 256 104 95 chr12 138892431 138892642 -5389847 - MLT2E LTR ERVL 0 628 416 1923 163 0 0 chr12 138892812 138893101 -5389388 + AluSx SINE Alu 1 289 -23 665 216 105 0 chr12 138893272 138893425 -5389064 + MLT1A2 LTR MaLR 1 169 -205 980 190 23 46 chr12 138893425 138893641 -5388848 + L1PB4 LINE L1 5946 6156 0 1073 174 9 39 chr12 138893644 138893874 -5388615 + MLT1A2 LTR MaLR 152 374 0 253 284 0 14 chr12 138894129 138894203 -5388286 + GA-rich Low_complexity Low_complexity 3 75 0 2057 134 7 16 chr12 138894311 138894445 -5388044 + AluSq SINE Alu 1 135 -178 2285 89 0 0 chr12 138894445 138894776 -5387713 + AluY SINE Alu 1 331 0 2057 134 7 16 chr12 138894776 138894945 -5387544 + AluSq SINE Alu 135 303 -10 247 291 115 20 chr12 138897003 138897151 -5385338 + MLT1I LTR MaLR 233 394 -15 2797 130 12 7 chr12 138897513 138897945 -5384544 + MER57B LTR ERV1 1 434 0 1362 201 94 18 chr12 138898484 138898823 -5383666 - MLT1A1 LTR MaLR 0 365 1 554 284 44 5 chr12 138899092 138899296 -5383193 - MIR SINE MIR 0 262 51 269 307 35 44 chr12 138899533 138899647 -5382842 + MIR SINE MIR 33 145 -117 488 259 50 50 chr12 138899766 138900028 -5382461 + L2 LINE L2 3027 3288 -25 225 316 70 26 chr12 138900771 138900885 -5381604 + MIR SINE MIR 119 237 -25 2137 135 44 14 chr12 138901079 138901443 -5381046 - THE1C LTR MaLR 0 375 1 230 272 51 82 chr12 138902809 138902967 -5379522 + LTR16B LTR ERVL 57 209 -255 2086 159 43 42 chr12 138903055 138903606 -5378883 + MLT2A2 LTR ERVL 1 554 0 340 297 86 19 chr12 138903729 138903938 -5378551 + Charlie8 DNA MER1_type 56 278 -2139 192 155 17 69 chr12 138905044 138905102 -5377387 - L2 LINE L2 -894 2420 2366 784 188 13 7 chr12 138905135 138905289 -5377200 + MLT1D LTR MaLR 1 155 -350 618 173 237 17 chr12 138905291 138905464 -5377025 + MSTA LTR MaLR 1 211 -215 279 280 8 17 chr12 138905465 138905583 -5376906 + C-rich Low_complexity Low_complexity 1 117 0 183 42 0 0 chr12 138905598 138905622 -5376867 + (CCCGA)n Simple_repeat Simple_repeat 1 24 0 1422 104 30 30 chr12 138905622 138905842 -5376647 + MSTA LTR MaLR 206 428 0 787 211 89 28 chr12 138905842 138906051 -5376438 + MLT1D LTR MaLR 151 346 -159 2385 100 0 0 chr12 138906051 138906362 -5376127 + AluSx SINE Alu 1 311 -1 787 211 89 28 chr12 138906362 138906380 -5376109 + MLT1D LTR MaLR 346 361 -144 369 0 0 0 chr12 138906380 138906421 -5376068 + (TG)n Simple_repeat Simple_repeat 2 42 0 787 211 89 28 chr12 138906421 138906467 -5376022 + MLT1D LTR MaLR 361 497 -8 609 297 10 0 chr12 138906644 138906839 -5375650 - MIR SINE MIR -64 198 2 2197 112 0 10 chr12 138907133 138907437 -5375052 - AluSx SINE Alu -11 301 1 2303 104 27 0 chr12 138909955 138910252 -5372237 - AluSx SINE Alu -7 305 1 206 297 50 30 chr12 138910411 138910512 -5371977 + MIR SINE MIR 51 153 -55 330 232 30 20 chr12 138910597 138910696 -5371793 - MER103 DNA DNA -21 145 46 1076 223 65 29 chr12 138910815 138911207 -5371282 - MLT1C LTR MaLR 0 467 1 331 288 9 9 chr12 138911668 138911779 -5370710 + L2 LINE L2 3203 3313 0 307 297 62 23 chr12 138912243 138912371 -5370118 + MLT1K LTR MaLR 119 251 -337 2322 52 0 31 chr12 138913821 138914107 -5368382 + AluY SINE Alu 35 311 0 1806 168 0 33 chr12 138914129 138914433 -5368056 + AluJo SINE Alu 6 299 -13 372 88 0 0 chr12 138914605 138914662 -5367827 + (TG)n Simple_repeat Simple_repeat 2 58 0 182 295 95 11 chr12 138914968 138915063 -5367426 + L2 LINE L2 3169 3271 -1 2076 128 31 0 chr12 138916082 138916371 -5366118 + AluSx SINE Alu 1 298 -14 502 145 0 0 chr12 138916371 138916447 -5366042 - MADE1 DNA Mariner -4 76 1 25 51 0 0 chr12 138916473 138916512 -5365977 + AT_rich Low_complexity Low_complexity 1 39 0 231 298 80 60 chr12 138917169 138917320 -5365169 + MIR SINE MIR 53 206 -56 32 26 0 0 chr12 138917463 138917502 -5364987 + AT_rich Low_complexity Low_complexity 1 39 0 1087 230 16 54 chr12 138917846 138918163 -5364326 + MER52A LTR ERV1 666 970 -785 734 186 117 27 chr12 138918150 138918338 -5364151 + MER52A LTR ERV1 1092 1296 -459 * 367 264 142 75 chr12 138918404 138918643 -5363846 + MER52A LTR ERV1 1216 1470 -285 484 258 12 61 chr12 138918649 138918812 -5363677 + MER52A LTR ERV1 1601 1755 0 24 0 0 0 chr12 138918859 138918883 -5363606 + AT_rich Low_complexity Low_complexity 1 24 0 1705 182 17 10 chr12 138918909 138919206 -5363283 + AluJo SINE Alu 1 299 -13 35 24 0 0 chr12 138919979 138920021 -5362468 + AT_rich Low_complexity Low_complexity 1 42 0 348 150 54 7 chr12 138920646 138920793 -5361696 + (TTATA)n Simple_repeat Simple_repeat 4 157 0 263 69 86 52 chr12 138920811 138920985 -5361504 + (TA)n Simple_repeat Simple_repeat 1 180 0 467 203 28 28 chr12 138920996 138921173 -5361316 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 992 89 0 48 chr12 138921662 138921808 -5360681 - AluSq/x SINE Alu -174 139 1 2157 124 7 0 chr12 138921940 138922238 -5360251 + AluSx SINE Alu 1 300 -12 2171 90 7 27 chr12 138922600 138922900 -5359589 - AluSx SINE Alu -18 294 1 980 249 18 9 chr12 138923320 138923545 -5358944 - MIR SINE MIR -27 235 9 1974 82 7 37 chr12 138923634 138923934 -5358555 + AluY SINE Alu 21 312 0 733 144 17 17 chr12 138925084 138925202 -5357287 - AluSc SINE Alu -190 119 2 444 280 96 8 chr12 138925202 138925327 -5357162 - MER45 DNA AcHobo -904 136 1 289 278 0 0 chr12 138925327 138925399 -5357090 + ERVL LTR ERVL 3131 3202 -2562 213 261 22 11 chr12 138925973 138926065 -5356424 + (TAA)n Simple_repeat Simple_repeat 1 93 0 635 244 23 34 chr12 138926568 138926744 -5355745 + MIR SINE MIR 47 220 -42 4303 182 23 28 chr12 138930065 138931021 -5351468 + L1P LINE L1 2681 3631 -2515 346 141 31 0 chr12 138931436 138931500 -5350989 + Alu SINE Alu 234 299 -2 1209 81 0 0 chr12 138932764 138932913 -5349576 - AluY SINE Alu -161 150 2 451 191 316 0 chr12 138933091 138933227 -5349262 - MER3 DNA MER1_type -23 186 8 1054 206 69 0 chr12 138933232 138933436 -5349053 + MER58A DNA MER1_type 6 223 -1 724 230 61 0 chr12 138933444 138933609 -5348880 - MER5B DNA MER1_type -3 175 1 28 0 0 0 chr12 138934045 138934073 -5348416 + AT_rich Low_complexity Low_complexity 1 28 0 2241 106 0 0 chr12 138934428 138934742 -5347747 + AluSx SINE Alu 1 314 0 374 204 97 11 chr12 138935242 138935335 -5347154 - MIR3 SINE MIR -3 205 105 533 180 0 93 chr12 138935349 138935532 -5346957 + L1MB3 LINE L1 5445 5610 -573 3455 102 26 0 chr12 138936348 138936850 -5345639 + L1PB2 LINE L1 5634 6148 -3 269 133 187 40 chr12 138936950 138937025 -5345464 + L1MB3 LINE L1 5693 5778 -405 1820 177 10 0 chr12 138937724 138938012 -5344477 - AluSx SINE Alu -21 291 1 23 0 0 0 chr12 138938078 138938101 -5344388 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 138938246 138938271 -5344218 + AT_rich Low_complexity Low_complexity 1 25 0 323 132 73 0 chr12 138938734 138938802 -5343687 + L1MB8 LINE L1 6106 6178 0 908 172 131 5 chr12 138939147 138939345 -5343144 + L1MB3 LINE L1 5807 6029 -154 1808 97 4 19 chr12 138939345 138939602 -5342887 - AluSx SINE Alu -10 302 50 257 316 32 0 chr12 138939623 138939718 -5342771 - L1MC4a LINE L1 -1884 5924 5827 1624 257 12 39 chr12 138940561 138940815 -5341674 - LTR53 LTR ERVL -8 511 275 2820 81 3 3 chr12 138940815 138941173 -5341316 - THE1B LTR MaLR -3 361 4 1624 257 12 39 chr12 138941173 138941409 -5341080 - LTR53 LTR ERVL -244 275 34 2239 126 0 0 chr12 138941462 138941771 -5340718 - AluSc SINE Alu 0 309 1 483 273 59 24 chr12 138942548 138942801 -5339688 + MER113 DNA MER1_type? 8 269 -252 1856 150 13 19 chr12 138942988 138943295 -5339194 + AluJo SINE Alu 1 305 -7 183 27 54 27 chr12 138943548 138943585 -5338904 + (TTA)n Simple_repeat Simple_repeat 1 38 0 234 222 208 0 chr12 138944018 138944090 -5338399 + L1MC4 LINE L1 6616 6702 -1340 261 232 0 0 chr12 138944097 138944166 -5338323 + (TA)n Simple_repeat Simple_repeat 1 69 0 447 19 0 0 chr12 138944179 138944231 -5338258 + (TG)n Simple_repeat Simple_repeat 2 53 0 1992 122 10 35 chr12 138944279 138944591 -5337898 + AluSc SINE Alu 1 304 -5 252 280 144 0 chr12 138944654 138944779 -5337710 + MIR SINE MIR 109 251 -11 314 247 45 11 chr12 138944885 138944974 -5337515 + LTR33 LTR ERVL 52 143 -378 299 278 33 0 chr12 138945191 138945281 -5337208 - MIR SINE MIR -122 140 48 24 0 0 0 chr12 138945407 138945431 -5337058 + AT_rich Low_complexity Low_complexity 1 24 0 2193 103 0 0 chr12 138945521 138945833 -5336656 - AluSg SINE Alu 0 314 3 180 125 0 0 chr12 138945902 138945934 -5336555 + (ATG)n Simple_repeat Simple_repeat 2 33 0 391 302 23 29 chr12 138945950 138946122 -5336367 - MIR SINE MIR -19 243 73 270 232 63 11 chr12 138946138 138946233 -5336256 - MIR SINE MIR -90 172 73 263 188 75 12 chr12 138946264 138946344 -5336145 - MIR SINE MIR -105 157 73 2272 108 3 0 chr12 138946623 138946918 -5335571 + AluSx SINE Alu 1 296 -16 604 274 47 0 chr12 138948537 138948727 -5333762 + MLT1I LTR MaLR 195 393 -16 617 271 11 6 chr12 138948732 138948913 -5333576 - MER5A DNA MER1_type -6 183 2 209 280 0 0 chr12 138948974 138949024 -5333465 + (CAT)n Simple_repeat Simple_repeat 3 52 0 2175 94 41 89 chr12 138949594 138949800 -5332689 - THE1C LTR MaLR 0 375 161 1710 89 119 0 chr12 138949800 138950035 -5332454 + AluSg SINE Alu 1 263 -47 243 0 0 0 chr12 138950035 138950062 -5332427 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2175 94 41 89 chr12 138950062 138950248 -5332241 - THE1C LTR MaLR -212 163 1 2256 122 0 0 chr12 138951025 138951329 -5331160 + AluSx SINE Alu 1 304 -8 2423 105 0 0 chr12 138952150 138952454 -5330035 + AluSx SINE Alu 1 304 -8 1537 217 24 63 chr12 138952510 138952948 -5329541 - MER67D LTR ERV1 -104 481 126 2171 114 3 7 chr12 138952948 138953245 -5329244 + AluSx SINE Alu 1 296 -16 1537 217 24 63 chr12 138953245 138953367 -5329122 - MER67D LTR ERV1 -459 126 1 505 62 15 0 chr12 138953368 138953433 -5329056 - MER31B LTR ERV1 -399 67 2 298 89 0 0 chr12 138953502 138953547 -5328942 + Alu SINE Alu 263 307 -1 21 0 0 0 chr12 138953548 138953569 -5328920 + AT_rich Low_complexity Low_complexity 1 21 0 383 143 0 12 chr12 138953650 138953734 -5328755 + (GA)n Simple_repeat Simple_repeat 2 84 0 293 252 74 44 chr12 138954076 138954211 -5328278 - LTR33 LTR ERVL 0 521 383 285 178 300 22 chr12 138954503 138954593 -5327896 - MLT1K LTR MaLR -181 407 293 189 0 0 0 chr12 138954877 138954898 -5327591 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 980 232 58 32 chr12 138955532 138955877 -5326612 - LTR37A LTR ERV1 -3 423 70 2670 114 44 7 chr12 138955884 138956297 -5326192 + MSTA LTR MaLR 1 428 0 267 369 0 0 chr12 138956423 138956545 -5325944 + MIR SINE MIR 131 252 -10 417 226 0 0 chr12 138957813 138957906 -5324583 + L1MB1 LINE L1 6075 6167 -1 241 271 100 43 chr12 138957910 138958050 -5324439 - L2 LINE L2 -8 3305 3158 250 286 43 62 chr12 138958271 138958432 -5324057 + LTR16C LTR ERVL 50 207 -284 654 301 120 22 chr12 138958456 138958772 -5323717 + MLT1H LTR MaLR 106 452 -97 269 299 0 28 chr12 138959149 138959293 -5323196 + (CTA)n Simple_repeat Simple_repeat 3 142 0 198 0 0 0 chr12 138959812 138959834 -5322655 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1776 153 45 0 chr12 138960276 138960564 -5321925 + AluSx SINE Alu 1 301 -11 818 348 29 3 chr12 138960627 138960969 -5321520 + MLT1I LTR MaLR 57 407 -2 383 302 11 17 chr12 138961111 138961148 -5321341 + (TA)n Simple_repeat Simple_repeat 1 37 -141 5869 95 55 8 chr12 138961148 138962000 -5320489 + L1MA2 LINE L1 5413 6304 0 383 302 11 17 chr12 138962000 138962141 -5320348 + (TA)n Simple_repeat Simple_repeat 37 178 0 461 101 11 112 chr12 138962147 138962236 -5320253 - MADE1 DNA Mariner 0 80 1 282 29 0 0 chr12 138963749 138963784 -5318705 + (TG)n Simple_repeat Simple_repeat 2 36 0 1777 121 99 0 chr12 138963784 138964056 -5318433 - AluSx SINE Alu -5 307 9 560 246 15 15 chr12 138964129 138964263 -5318226 - MER94 DNA DNA 0 134 1 1991 148 33 18 chr12 138964283 138964615 -5317874 - L1PA16 LINE L1 0 6166 5830 1612 174 0 0 chr12 138964615 138964880 -5317609 + L1PA16 LINE L1 5579 5843 -323 457 337 112 9 chr12 138965165 138965610 -5316879 + MER113 DNA MER1_type? 31 521 0 332 329 151 24 chr12 138966426 138966851 -5315638 + L2 LINE L2 2561 3096 -217 1977 153 143 11 chr12 138966851 138967229 -5315260 - MSTA LTR MaLR 0 428 1 332 329 151 24 chr12 138967229 138967378 -5315111 + L2 LINE L2 3096 3225 -88 2017 105 58 20 chr12 138967564 138967859 -5314630 - AluSq SINE Alu -2 311 6 25 65 0 0 chr12 138968035 138968081 -5314408 + AT_rich Low_complexity Low_complexity 1 46 0 235 222 103 68 chr12 138968235 138968352 -5314137 + MLT1I LTR MaLR 313 409 0 21 0 0 0 chr12 138968912 138968933 -5313556 + AT_rich Low_complexity Low_complexity 1 21 0 1576 252 36 16 chr12 138970374 138970822 -5311667 + L1MB7 LINE L1 5651 6107 -77 577 160 0 0 chr12 138970856 138970950 -5311539 + AluJ/FRAM SINE Alu 219 312 0 1513 171 26 4 chr12 138970950 138971214 -5311275 + AluJb SINE Alu 1 270 -42 1308 44 6 16 chr12 138971243 138971252 -5311237 + (GAAA)n Simple_repeat Simple_repeat 1 188 0 1308 44 6 16 chr12 138971252 138971434 -5311055 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 216 182 0 0 chr12 138971514 138971558 -5310931 + A-rich Low_complexity Low_complexity 1 44 0 1957 106 0 7 chr12 138971691 138971964 -5310525 - AluSg SINE Alu -3 307 37 336 194 0 0 chr12 138971964 138972026 -5310463 + AluSp/q SINE Alu 237 298 -5 536 254 71 30 chr12 138972415 138972584 -5309905 - MIR SINE MIR -53 209 34 1055 220 59 62 chr12 138972594 138972723 -5309766 + MLT1A1 LTR MaLR 13 141 -224 3847 100 45 4 chr12 138972723 138973253 -5309236 - MER41A LTR ERV1 0 554 3 1055 220 59 62 chr12 138973253 138973477 -5309012 + MLT1A1 LTR MaLR 141 365 0 1970 73 108 35 chr12 138973642 138973929 -5308560 + AluSq SINE Alu 2 309 -4 4340 159 19 17 chr12 138973934 138974659 -5307830 - LTR8A LTR ERV1 0 727 1 325 275 57 83 chr12 138974898 138974972 -5307517 - MLT1I LTR MaLR -4 405 331 2199 119 0 0 chr12 138974972 138975266 -5307223 + AluSg SINE Alu 1 294 -16 325 275 57 83 chr12 138975266 138975384 -5307105 - MLT1I LTR MaLR -78 331 218 353 246 34 25 chr12 138975461 138975579 -5306910 - L1MA8 LINE L1 -2 6289 6171 5282 96 25 4 chr12 138976120 138976797 -5305692 - LTR8 LTR ERV1 0 691 1 266 303 80 48 chr12 138977326 138977514 -5304975 - MIR SINE MIR -17 245 52 216 0 0 0 chr12 138977642 138977666 -5304823 + (TC)n Simple_repeat Simple_repeat 2 25 0 456 19 0 0 chr12 138977666 138977719 -5304770 + (CA)n Simple_repeat Simple_repeat 2 54 0 225 0 0 0 chr12 138977718 138977743 -5304746 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 244 210 16 16 chr12 138978332 138978394 -5304095 + (TA)n Simple_repeat Simple_repeat 2 63 0 207 0 0 0 chr12 138978394 138978417 -5304072 + (CA)n Simple_repeat Simple_repeat 2 24 0 2309 44 27 7 chr12 138979639 138979935 -5302554 + AluY SINE Alu 1 302 -9 528 233 8 8 chr12 138980897 138981017 -5301472 - MER58B DNA MER1_type 0 341 222 22 0 0 0 chr12 138981257 138981279 -5301210 + AT_rich Low_complexity Low_complexity 1 22 0 284 226 3 100 chr12 138981458 138981548 -5300941 + MLT1A2 LTR MaLR 1 78 -302 483 257 39 39 chr12 138981565 138981744 -5300745 + MLT1A2 LTR MaLR 57 235 -139 194 128 26 0 chr12 138982660 138982699 -5299790 + (CA)n Simple_repeat Simple_repeat 1 40 0 621 313 61 18 chr12 138983583 138983976 -5298513 - LTR16B LTR ERVL 0 464 55 884 298 40 35 chr12 138984485 138984757 -5297732 - HERV16 LTR ERVL -2622 2374 2098 2386 178 137 21 chr12 138984757 138985290 -5297199 + LTR49 LTR ERV1 1 595 0 884 298 40 35 chr12 138985290 138985390 -5297099 - HERV16 LTR ERVL -2898 2098 2000 1998 114 14 7 chr12 138985618 138985940 -5296549 - AluSc SINE Alu 0 309 1 526 339 56 43 chr12 138985973 138986783 -5295706 - HERV16 LTR ERVL -3420 1576 716 1674 248 34 42 chr12 138987067 138987558 -5294931 + L1MB8 LINE L1 5625 6113 -65 2035 106 46 3 chr12 138987558 138987841 -5294648 - AluSx SINE Alu -17 295 1 1674 248 34 42 chr12 138987841 138987901 -5294588 + L1MB8 LINE L1 6113 6172 -6 255 267 122 11 chr12 138987912 138988002 -5294487 - LTR16B LTR ERVL -362 102 3 398 289 201 8 chr12 138988678 138988917 -5293572 - LTR33A LTR ERVL -14 509 225 180 111 0 0 chr12 138989798 138989825 -5292664 + (CAA)n Simple_repeat Simple_repeat 3 29 0 1295 193 0 0 chr12 138989880 138990108 -5292381 - AluJb SINE Alu 0 312 85 199 322 85 17 chr12 138990905 138991023 -5291466 + MIR SINE MIR 131 256 -6 945 297 31 3 chr12 138992318 138992641 -5289848 + L1ME1 LINE L1 37 368 -6028 328 271 202 41 chr12 138992642 138993004 -5289485 + L1ME1 LINE L1 4984 5403 -812 2604 54 0 6 chr12 138993022 138993335 -5289154 + AluY SINE Alu 1 311 0 2673 252 27 28 chr12 138993341 138994119 -5288370 + L1ME1 LINE L1 5453 6229 -6 228 299 82 22 chr12 138994734 138994868 -5287621 - MER117 DNA MER1_type -9 188 47 310 277 44 22 chr12 138995048 138995185 -5287304 - L1ME4a LINE L1 -4 6117 5978 24 32 0 0 chr12 138995548 138995579 -5286910 + AT_rich Low_complexity Low_complexity 1 31 0 2415 100 0 3 chr12 138995599 138995909 -5286580 + AluSq SINE Alu 1 309 -4 460 273 93 93 chr12 138996065 138996131 -5286358 - MLT1I LTR MaLR 0 409 344 855 241 82 14 chr12 138996131 138996338 -5286151 + MER58A DNA MER1_type 3 223 -1 460 273 93 93 chr12 138996338 138996638 -5285851 - MLT1I LTR MaLR -64 345 43 259 143 48 0 chr12 138996814 138996856 -5285633 - L2 LINE L2 -96 3217 3174 269 213 44 69 chr12 138997896 138998056 -5284433 - L1MEc LINE L1 -2946 3269 3114 1432 261 56 56 chr12 138998094 138999274 -5283215 - L1MEc LINE L1 -3603 2612 1480 1273 111 34 14 chr12 138999276 138999483 -5283006 - AluSg/x SINE Alu -14 296 86 559 299 162 20 chr12 138999486 138999930 -5282559 - L1MEc LINE L1 -4937 1459 953 184 102 41 20 chr12 138999939 138999988 -5282501 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 41 0 0 0 chr12 139000086 139000127 -5282362 + AT_rich Low_complexity Low_complexity 1 41 0 183 145 16 32 chr12 139000133 139000195 -5282294 + (TA)n Simple_repeat Simple_repeat 2 62 0 267 232 0 63 chr12 139000219 139000314 -5282175 - L1MEc LINE L1 -5484 912 824 345 267 65 54 chr12 139000338 139000505 -5281984 + MLT1H1 LTR MaLR 382 547 -2 381 351 13 13 chr12 139000730 139000884 -5281605 - MIR3 SINE MIR -1 207 54 451 217 0 33 chr12 139001234 139001414 -5281075 + (ATGGTG)n Simple_repeat Simple_repeat 5 178 0 268 261 0 0 chr12 139001416 139001481 -5281008 + (TGG)n Simple_repeat Simple_repeat 1 65 0 23 33 0 0 chr12 139001837 139001867 -5280622 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr12 139001951 139001985 -5280504 + (TG)n Simple_repeat Simple_repeat 2 35 0 518 305 52 14 chr12 139003217 139003427 -5279062 + LTR16B LTR ERVL 245 462 -2 243 240 0 0 chr12 139003975 139004025 -5278464 + MLT1J LTR MaLR 348 397 -114 2104 120 3 3 chr12 139004824 139005173 -5277316 + AluSg SINE Alu 1 349 0 210 265 0 0 chr12 139005479 139005547 -5276942 + (TA)n Simple_repeat Simple_repeat 1 68 0 363 226 0 15 chr12 139005996 139006083 -5276406 - AluJ/FLAM SINE Alu -231 71 1 191 239 22 0 chr12 139006270 139006316 -5276173 - MIR SINE MIR -108 154 108 687 307 20 0 chr12 139006662 139006916 -5275573 + L1MC/D LINE L1 1 259 -5786 1890 253 26 39 chr12 139006961 139007585 -5274904 + L1MC/D LINE L1 4017 4632 -1932 2373 85 0 3 chr12 139007655 139007960 -5274529 - AluY SINE Alu -7 304 1 582 241 128 0 chr12 139008000 139008265 -5274224 + L1MC/D LINE L1 4804 5102 -1462 195 129 0 0 chr12 139008269 139008300 -5274189 + (GGA)n Simple_repeat Simple_repeat 3 33 0 712 149 0 43 chr12 139008317 139008505 -5273984 + (GGA)n Simple_repeat Simple_repeat 1 180 0 841 265 8 16 chr12 139008507 139008760 -5273729 + L1MC/D LINE L1 5110 5360 -1204 2572 206 31 20 chr12 139008766 139009474 -5273015 + L1MC/D LINE L1 5509 6224 -538 2180 236 58 30 chr12 139009474 139010096 -5272393 + L1MD2 LINE L1 5713 6351 -8 605 14 14 0 chr12 139010246 139010320 -5272169 + (TG)n Simple_repeat Simple_repeat 2 76 0 326 295 40 27 chr12 139011492 139011676 -5270813 + MIR SINE MIR 75 261 -1 225 0 0 0 chr12 139011813 139011838 -5270651 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1802 139 7 24 chr12 139011840 139012128 -5270361 - AluJo SINE Alu -29 283 1 222 62 0 0 chr12 139012180 139012212 -5270277 + (TG)n Simple_repeat Simple_repeat 1 32 0 1805 94 4 20 chr12 139012272 139012526 -5269963 - AluSx SINE Alu -13 299 50 257 316 32 0 chr12 139012547 139012642 -5269847 - L1MC4a LINE L1 -1884 5924 5827 1624 257 12 39 chr12 139013485 139013739 -5268750 - LTR53 LTR ERVL -8 511 275 2781 81 6 3 chr12 139013739 139014096 -5268393 - THE1B LTR MaLR -3 361 4 1624 257 12 39 chr12 139014096 139014332 -5268157 - LTR53 LTR ERVL -244 275 34 2061 137 0 13 chr12 139014385 139014698 -5267791 - AluSc SINE Alu 0 309 1 216 74 19 37 chr12 139014968 139015022 -5267467 + (CCCCCA)n Simple_repeat Simple_repeat 1 53 0 222 104 0 62 chr12 139015026 139015102 -5267387 + (CCCCCA)n Simple_repeat Simple_repeat 1 71 0 183 42 0 0 chr12 139015336 139015360 -5267129 + (TA)n Simple_repeat Simple_repeat 1 24 0 236 229 0 16 chr12 139015876 139015937 -5266552 + MIR SINE MIR 67 126 -136 2042 104 45 17 chr12 139015965 139016254 -5266235 - AluSx SINE Alu -15 297 1 606 109 0 0 chr12 139016339 139016431 -5266058 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 234 62 0 0 chr12 139016847 139016879 -5265610 + (TG)n Simple_repeat Simple_repeat 1 32 0 288 0 0 0 chr12 139018900 139018932 -5263557 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 380 268 0 117 chr12 139018958 139019137 -5263352 - MER5B DNA MER1_type -12 166 9 3235 191 53 85 chr12 139019680 139019801 -5262688 - L1MA10 LINE L1 -56 6278 6155 1785 97 56 100 chr12 139019801 139020120 -5262369 - AluSg SINE Alu -5 305 1 3235 191 53 85 chr12 139020120 139020483 -5262006 - L1MA10 LINE L1 -179 6155 5782 2392 122 31 3 chr12 139020483 139020836 -5261653 - THE1B LTR MaLR -1 363 1 3235 191 53 85 chr12 139020836 139021276 -5261213 - L1MA10 LINE L1 -552 5782 5383 1201 253 125 3 chr12 139022290 139022650 -5259839 - MER110 LTR ERV1 -87 404 1 1926 149 10 0 chr12 139022701 139022989 -5259500 - AluSx SINE Alu -21 291 1 846 286 93 26 chr12 139023557 139024196 -5258293 - L2 LINE L2 -1 3312 2639 2219 116 72 23 chr12 139024901 139025246 -5257243 + THE1B LTR MaLR 3 364 0 575 128 43 0 chr12 139025300 139025394 -5257095 + MER4A LTR ERV1 1 98 -566 * 1892 148 165 20 chr12 139025389 139025746 -5256743 + MER4A LTR ERV1 256 664 0 7304 63 1 1 chr12 139026309 139027259 -5255230 + L1PA8 LINE L1 5222 6172 0 267 266 0 16 chr12 139027429 139027493 -5254996 - MIR SINE MIR -187 75 13 1949 81 0 38 chr12 139027547 139027851 -5254638 - AluY SINE Alu 0 325 32 573 273 93 55 chr12 139028094 139028462 -5254027 + L1MC5 LINE L1 7270 7671 -290 1679 165 101 0 chr12 139028462 139028790 -5253699 + MER46B DNA MER2_type 1 236 0 573 273 93 55 chr12 139028790 139029022 -5253467 + L1MC5 LINE L1 7671 7893 -68 279 263 32 70 chr12 139029101 139029287 -5253202 + L2 LINE L2 3100 3278 -35 2048 118 7 0 chr12 139029297 139029636 -5252853 - AluSx SINE Alu 0 341 1 246 136 0 0 chr12 139030454 139030498 -5251991 + (A)n Simple_repeat Simple_repeat 1 44 0 276 30 0 0 chr12 139031864 139031897 -5250592 + (ATG)n Simple_repeat Simple_repeat 2 34 0 256 311 75 0 chr12 139031899 139032005 -5250484 - MIR SINE MIR -3 259 146 2182 96 7 0 chr12 139032066 139032378 -5250111 - AluSp SINE Alu 0 314 1 261 0 0 0 chr12 139032515 139032544 -5249945 + (CAATA)n Simple_repeat Simple_repeat 2 30 0 2051 121 0 13 chr12 139032924 139033229 -5249260 - AluSx SINE Alu -11 301 1 2215 140 35 22 chr12 139033233 139033634 -5248855 - L1MA5A LINE L1 0 6297 5892 218 315 67 0 chr12 139034474 139034563 -5247926 + MIR SINE MIR 89 183 -79 591 315 14 5 chr12 139034938 139035157 -5247332 - MIR SINE MIR -25 237 17 229 276 35 46 chr12 139035164 139035251 -5247238 + MER5B DNA MER1_type 1 86 -92 297 286 20 0 chr12 139035316 139035414 -5247075 + MIR SINE MIR 91 190 -72 368 310 9 0 chr12 139035414 139035527 -5246962 + MER81 DNA DNA 1 114 0 232 242 15 15 chr12 139036511 139036577 -5245912 - Charlie8 DNA MER1_type -2 2415 2350 953 265 81 30 chr12 139036704 139037165 -5245324 + L2 LINE L2 2740 3230 -83 232 136 68 15 chr12 139037169 139037301 -5245188 + (TA)n Simple_repeat Simple_repeat 2 140 0 199 242 45 45 chr12 139037306 139037372 -5245117 + L2 LINE L2 3248 3313 0 2200 102 0 0 chr12 139037540 139037825 -5244664 - AluSx SINE Alu -10 302 18 353 319 7 7 chr12 139038051 139038189 -5244300 + Charlie8 DNA MER1_type 88 225 -2192 670 196 114 27 chr12 139038673 139038857 -5243632 - MER90 LTR ERV1 0 614 415 1815 86 16 0 chr12 139038865 139039120 -5243369 - L1MA1 LINE L1 -9 6293 6035 920 235 82 8 chr12 139039133 139039376 -5243113 - MER90 LTR ERV1 -314 261 1 279 163 12 75 chr12 139041532 139041612 -5240877 + L1ME4a LINE L1 5978 6052 -69 259 252 125 34 chr12 139041840 139042044 -5240445 - MLT1J LTR MaLR -12 603 270 1613 148 7 76 chr12 139042074 139042422 -5240067 + AluSx SINE Alu 1 327 0 291 279 6 73 chr12 139043344 139043453 -5239036 - MIR SINE MIR -1 261 165 2176 120 0 0 chr12 139043453 139043745 -5238744 - AluSg SINE Alu -18 292 1 291 279 6 73 chr12 139043745 139043800 -5238689 - MIR SINE MIR -97 165 108 364 186 32 8 chr12 139044265 139044389 -5238100 + GA-rich Low_complexity Low_complexity 1 127 0 304 266 25 0 chr12 139044781 139044860 -5237629 - L2 LINE L2 -1063 2251 2171 1528 165 91 81 chr12 139045066 139045341 -5237148 + L1MC3 LINE L1 7355 7637 -148 1710 172 0 24 chr12 139045341 139045638 -5236851 + AluJo SINE Alu 1 290 -22 1528 165 91 81 chr12 139045638 139045768 -5236721 + L1MC3 LINE L1 7637 7764 -21 212 321 147 32 chr12 139046178 139046524 -5235965 + L2 LINE L2 2488 2873 -441 339 211 87 10 chr12 139047356 139047460 -5235029 + L2 LINE L2 2932 3043 -270 1962 139 7 10 chr12 139047860 139048163 -5234326 + AluJb SINE Alu 1 302 -10 237 297 31 0 chr12 139048196 139048260 -5234229 - MIR SINE MIR -22 240 175 1956 61 64 90 chr12 139048283 139048594 -5233895 + AluY SINE Alu 1 303 -8 334 197 0 0 chr12 139048943 139049009 -5233480 + L1MA8 LINE L1 6222 6287 -4 283 307 0 0 chr12 139049112 139049187 -5233302 + (CATA)n Simple_repeat Simple_repeat 2 76 0 477 329 71 41 chr12 139051430 139051892 -5230597 - MLT1J LTR MaLR -7 504 29 330 269 10 10 chr12 139052359 139052463 -5230026 + MER5B DNA MER1_type 6 109 -69 1866 185 26 66 chr12 139052480 139052935 -5229554 - L1MC2 LINE L1 -8 6336 5900 269 220 17 0 chr12 139052946 139053005 -5229484 + MER5B DNA MER1_type 118 177 -1 201 227 76 15 chr12 139053066 139053132 -5229357 - MIR3 SINE MIR -52 156 87 635 244 23 34 chr12 139053417 139053593 -5228896 - MIR SINE MIR -42 220 47 213 261 22 11 chr12 139054096 139054188 -5228301 + (TTA)n Simple_repeat Simple_repeat 1 93 0 253 368 39 13 chr12 139054518 139054749 -5227740 - MLT1K LTR MaLR -314 274 38 276 30 0 0 chr12 139054894 139054927 -5227562 + (ATG)n Simple_repeat Simple_repeat 2 34 0 229 308 75 9 chr12 139054929 139055036 -5227453 - MIR SINE MIR -3 259 146 1917 135 53 14 chr12 139057179 139057535 -5224954 - L1PB4 LINE L1 0 6156 5787 648 211 0 0 chr12 139057536 139057683 -5224806 + (TG)n Simple_repeat Simple_repeat 2 148 0 2145 154 8 34 chr12 139057683 139057992 -5224497 - L1PB4 LINE L1 -364 5792 5493 2239 95 3 23 chr12 139057992 139058296 -5224193 - AluSg SINE Alu -12 298 1 2145 154 8 34 chr12 139058296 139058368 -5224121 - L1PB4 LINE L1 -663 5493 5421 249 250 30 20 chr12 139061770 139061870 -5220619 + L1MCc LINE L1 29 129 -6294 910 237 138 71 chr12 139062086 139062578 -5219911 + L1MCc LINE L1 2531 3105 -3836 1855 163 0 27 chr12 139062578 139062878 -5219611 + AluSx SINE Alu 1 292 -20 910 237 138 71 chr12 139062878 139063155 -5219334 + L1MCc LINE L1 3105 3362 -3579 981 103 0 7 chr12 139063166 139063302 -5219187 + AluJb SINE Alu 1 135 -177 1749 165 0 31 chr12 139063302 139063624 -5218865 + AluJb SINE Alu 1 312 0 632 299 47 6 chr12 139063688 139064009 -5218480 + L1MCc LINE L1 3397 3730 -3211 1888 75 0 20 chr12 139064017 139064270 -5218219 + AluY SINE Alu 59 306 -5 22 0 0 0 chr12 139064728 139064750 -5217739 + AT_rich Low_complexity Low_complexity 1 22 0 206 420 0 27 chr12 139064972 139065122 -5217367 + L2 LINE L2 3031 3176 -96 180 0 0 0 chr12 139066010 139066030 -5216459 + (TTATA)n Simple_repeat Simple_repeat 3 22 0 23 0 0 0 chr12 139066034 139066057 -5216432 + AT_rich Low_complexity Low_complexity 1 23 0 387 291 17 0 chr12 139066060 139066177 -5216312 - L1ME3 LINE L1 -1 6161 6043 2384 279 61 5 chr12 139066262 139067120 -5215369 - L1M4 LINE L1 -1371 4775 3870 2917 113 51 0 chr12 139067120 139067502 -5214987 + MLT2A1 LTR ERVL 1 407 -37 293 82 20 0 chr12 139067502 139067551 -5214938 + (TA)n Simple_repeat Simple_repeat 2 51 0 2917 113 51 0 chr12 139067551 139067583 -5214906 + MLT2A1 LTR ERVL 407 436 -8 1174 270 26 26 chr12 139067583 139068086 -5214403 - L1M4 LINE L1 -2270 3876 3374 1503 278 41 41 chr12 139068337 139068442 -5214047 - L1ME1 LINE L1 -5 6161 6057 2208 111 0 3 chr12 139068442 139068731 -5213758 - AluSg SINE Alu -22 288 1 1503 278 41 41 chr12 139068731 139068895 -5213594 - L1ME1 LINE L1 -109 6057 5894 1085 216 124 74 chr12 139068895 139069240 -5213249 + MLT2D LTR ERVL 1 370 -44 225 0 0 0 chr12 139069240 139069265 -5213224 + (TG)n Simple_repeat Simple_repeat 2 26 0 1085 216 124 74 chr12 139069265 139069313 -5213176 + MLT2D LTR ERVL 370 414 0 1503 278 41 41 chr12 139069313 139069679 -5212810 - L1ME1 LINE L1 -271 5895 5525 1580 179 54 3 chr12 139070290 139070586 -5211903 + LTR45 LTR ERV1 1 311 -214 1146 192 41 9 chr12 139070720 139070939 -5211550 + LTR45 LTR ERV1 300 525 0 4966 153 44 18 chr12 139071272 139072152 -5210337 + MER4D LTR ERV1 1 903 0 237 167 19 19 chr12 139072541 139072595 -5209894 + LTR37A LTR ERV1 77 130 -296 2685 48 0 0 chr12 139072599 139072910 -5209579 + AluY SINE Alu 1 311 0 399 195 0 0 chr12 139073567 139073644 -5208845 - L1MB3 LINE L1 -26 6157 6081 1262 201 52 82 chr12 139074233 139074281 -5208208 + LTR37A LTR ERV1 1 49 -377 805 273 23 5 chr12 139074281 139074501 -5207988 - MER58A DNA MER1_type 0 224 1 1262 201 52 82 chr12 139074501 139074891 -5207598 + LTR37A LTR ERV1 49 426 0 411 312 165 6 chr12 139075112 139075357 -5207132 - MIR SINE MIR 0 262 5 251 354 10 0 chr12 139075655 139075754 -5206735 - MIR SINE MIR -119 143 44 1992 135 0 49 chr12 139075758 139076085 -5206404 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr12 139076085 139076113 -5206376 + AT_rich Low_complexity Low_complexity 1 28 0 1676 167 3 34 chr12 139076793 139077111 -5205378 + AluJo SINE Alu 1 309 0 420 320 48 19 chr12 139077153 139077359 -5205130 - MIR SINE MIR -6 256 45 286 302 86 49 chr12 139077627 139077872 -5204617 + L2 LINE L2 1904 2157 -1157 256 224 26 26 chr12 139077887 139078003 -5204486 + (TATAA)n Simple_repeat Simple_repeat 5 120 0 297 234 19 0 chr12 139078016 139078174 -5204315 + (TA)n Simple_repeat Simple_repeat 2 162 0 1193 55 7 0 chr12 139078199 139078345 -5204144 + AluY SINE Alu 158 304 -7 257 191 44 7 chr12 139078359 139078495 -5203994 + (TA)n Simple_repeat Simple_repeat 1 141 0 255 103 0 0 chr12 139078499 139078538 -5203951 + (CA)n Simple_repeat Simple_repeat 2 40 0 775 320 55 12 chr12 139078556 139078959 -5203530 + L2 LINE L2 2242 2661 -653 353 288 15 45 chr12 139078970 139079102 -5203387 + L2 LINE L2 3186 3313 0 2182 151 58 32 chr12 139080999 139081516 -5200973 - MLT2A2 LTR ERVL -2 552 1 276 305 69 46 chr12 139081915 139082046 -5200443 + MLT1L LTR MaLR 3 136 -479 369 0 0 0 chr12 139082387 139082428 -5200061 + (TC)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr12 139082427 139082451 -5200038 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 216 0 0 0 chr12 139082450 139082474 -5200015 + (GA)n Simple_repeat Simple_repeat 1 24 0 400 298 28 39 chr12 139082569 139082750 -5199739 + MLT1L LTR MaLR 432 610 -5 1556 267 59 33 chr12 139083104 139083352 -5199137 + L1MCc LINE L1 2 242 -6180 1852 176 0 10 chr12 139083352 139083664 -5198825 - AluSx SINE Alu -3 309 1 1556 267 59 33 chr12 139083664 139084004 -5198485 + L1MCc LINE L1 242 940 -5482 2127 264 46 56 chr12 139084107 139086257 -5196232 + L1MCc LINE L1 946 3263 -3678 657 168 0 24 chr12 139086372 139086497 -5195992 + L1MC3 LINE L1 6697 6818 -967 1653 228 3 19 chr12 139086509 139086868 -5195621 + MLT1A1 LTR MaLR 13 365 0 755 228 107 0 chr12 139086868 139086909 -5195580 + L1MD3 LINE L1 6837 6872 -1123 303 71 0 0 chr12 139086909 139086951 -5195538 + (CA)n Simple_repeat Simple_repeat 1 42 0 755 228 107 0 chr12 139086951 139087133 -5195356 + L1MD3 LINE L1 6872 7084 -911 4118 57 20 0 chr12 139087139 139087668 -5194821 + L1PA8 LINE L1 5629 6167 0 2356 208 79 39 chr12 139087681 139088349 -5194140 + L1MC3 LINE L1 7084 7778 -7 1377 217 69 77 chr12 139088671 139088718 -5193771 + L1MDa LINE L1 27 73 -6467 1690 156 15 0 chr12 139088718 139088988 -5193501 + AluJb SINE Alu 27 300 -12 1377 217 69 77 chr12 139088988 139089175 -5193314 + L1MDa LINE L1 73 260 -6280 2618 61 0 0 chr12 139089175 139089486 -5193003 + AluY SINE Alu 1 311 0 1377 217 69 77 chr12 139089486 139089756 -5192733 + L1MDa LINE L1 260 528 -6012 1019 259 37 17 chr12 139089782 139090076 -5192413 + L1MD1 LINE L1 5941 6240 -2 539 314 103 29 chr12 139090747 139091155 -5191334 - LTR33 LTR ERVL -9 512 75 325 118 0 20 chr12 139092080 139092131 -5190358 - L1M3 LINE L1 -498 5836 5787 2184 115 0 0 chr12 139092233 139092528 -5189961 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr12 139092528 139092549 -5189940 + AT_rich Low_complexity Low_complexity 1 21 0 257 0 0 29 chr12 139092673 139092707 -5189782 + (CA)n Simple_repeat Simple_repeat 2 34 0 580 207 152 24 chr12 139092709 139092873 -5189616 - L1M3 LINE L1 -519 5793 5609 1370 192 104 9 chr12 139092873 139093190 -5189299 + L1MA9 LINE L1 5959 6305 -7 2499 149 12 2 chr12 139094477 139094885 -5187604 + LOR1a LTR ERV1 1 412 -85 240 163 122 0 chr12 139094886 139094935 -5187554 + U5 snRNA snRNA 1 55 -61 * 722 136 0 0 chr12 139094920 139095023 -5187466 + LOR1a LTR ERV1 395 497 0 1283 228 72 12 chr12 139095518 139095852 -5186637 - L1MA9 LINE L1 0 6312 5959 470 233 135 18 chr12 139095853 139096016 -5186473 + L1M2 LINE L1 5610 5791 -500 234 265 73 0 chr12 139095984 139096052 -5186437 + L1MC4 LINE L1 6630 6702 -1340 * 1403 201 29 26 chr12 139096356 139096700 -5185789 + MLT1A1 LTR MaLR 1 345 -20 4375 92 21 127 chr12 139096955 139097725 -5184764 - LTR12 LTR ERV1 0 688 1 203 255 92 0 chr12 139099141 139099239 -5183250 + (CATATA)n Simple_repeat Simple_repeat 4 110 0 220 196 54 0 chr12 139099802 139099858 -5182631 + MIR SINE MIR 201 259 -3 294 327 44 0 chr12 139099876 139100035 -5182454 - L1ME LINE L1 -345 5776 5611 915 303 76 33 chr12 139101215 139101638 -5180851 - L2 LINE L2 0 3313 2873 21 0 0 0 chr12 139101858 139101879 -5180610 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 139101918 139101949 -5180540 + AT_rich Low_complexity Low_complexity 1 31 0 346 254 62 46 chr12 139102565 139102695 -5179794 - MLT1J LTR MaLR -38 473 342 412 294 13 33 chr12 139102715 139102868 -5179621 + MIR SINE MIR 101 250 -12 201 226 0 0 chr12 139102874 139102927 -5179562 + (CAT)n Simple_repeat Simple_repeat 2 54 0 626 196 0 7 chr12 139102966 139103119 -5179370 + (CACCAT)n Simple_repeat Simple_repeat 5 156 0 710 94 179 26 chr12 139103575 139103692 -5178797 - FLAM_C SINE Alu -4 139 5 226 296 53 6 chr12 139103787 139103956 -5178533 - L1ME LINE L1 -814 5332 5156 324 0 0 0 chr12 139104887 139104923 -5177566 + (TG)n Simple_repeat Simple_repeat 2 37 0 282 106 0 0 chr12 139105033 139105080 -5177409 + (TG)n Simple_repeat Simple_repeat 1 47 0 2484 113 6 3 chr12 139106232 139106578 -5175911 - L1PB1 LINE L1 -1 6150 5804 229 250 170 18 chr12 139106591 139106703 -5175786 + MER20B DNA MER1_type 63 191 -592 1853 202 57 113 chr12 139106924 139107466 -5175023 - LTR9 LTR ERV1 0 612 110 1979 100 7 21 chr12 139107466 139107755 -5174734 - L1PA8 LINE L1 -7 6165 5881 1853 202 57 113 chr12 139107755 139107860 -5174629 - LTR9 LTR ERV1 -502 110 1 327 313 9 0 chr12 139107876 139107988 -5174501 + MLT2C1 LTR ERVL 1 113 -284 1209 269 8 0 chr12 139107990 139108254 -5174235 + Tigger7 DNA MER2_type 2 267 -2220 463 226 0 21 chr12 139108252 139108345 -5174144 + Tigger7 DNA MER2_type 2394 2484 -7 * 912 244 13 22 chr12 139108361 139108591 -5173898 + MLT2C1 LTR ERVL 121 348 -49 362 317 33 39 chr12 139109505 139109685 -5172804 + MIR SINE MIR 14 192 -70 4081 139 12 15 chr12 139110061 139110736 -5171753 + L1PA13 LINE L1 5491 6163 0 2193 131 0 0 chr12 139110793 139111105 -5171384 - AluSx SINE Alu 0 312 1 7942 33 5 0 chr12 139111702 139112942 -5169547 + L1PA3 LINE L1 4912 6155 0 297 151 0 0 chr12 139113640 139113693 -5168796 + T-rich Low_complexity Low_complexity 3 55 0 1031 190 12 0 chr12 139113695 139113858 -5168631 - FRAM SINE Alu 0 166 2 1457 73 0 6 chr12 139114084 139114263 -5168226 + AluSc SINE Alu 1 178 -131 1165 172 5 0 chr12 139114492 139114690 -5167799 - MSTA LTR MaLR -229 199 1 663 184 109 14 chr12 139114690 139114834 -5167655 - MER3 DNA MER1_type -51 158 1 298 280 66 52 chr12 139114987 139115148 -5167341 - L1ME4a LINE L1 0 6121 5953 2032 144 6 10 chr12 139115148 139115460 -5167029 - AluSx SINE Alu -1 311 1 298 280 66 52 chr12 139115460 139115584 -5166905 - L1ME4a LINE L1 -168 5953 5832 1852 157 0 14 chr12 139115819 139116113 -5166376 - AluJb SINE Alu -22 290 1 225 295 0 0 chr12 139116153 139116214 -5166275 - Charlie8 DNA MER1_type -2249 168 108 228 298 64 0 chr12 139116489 139116583 -5165906 - L1ME4a LINE L1 -501 5620 5521 694 168 58 15 chr12 139117294 139117431 -5165058 - L1MB5 LINE L1 -366 5808 5666 1608 213 6 21 chr12 139117431 139117762 -5164727 + L1MB5 LINE L1 5833 6165 -9 222 214 29 14 chr12 139117775 139117845 -5164644 + (TA)n Simple_repeat Simple_repeat 1 71 0 214 171 24 0 chr12 139117846 139117887 -5164602 + GA-rich Low_complexity Low_complexity 2 43 0 280 232 0 49 chr12 139118414 139118496 -5163993 - MLT1J2 LTR MaLR -5 445 368 2060 141 0 3 chr12 139119427 139119726 -5162763 - AluSx SINE Alu -14 298 1 5672 143 13 1 chr12 139119782 139121211 -5161278 - L1PA14 LINE L1 0 6161 4718 2329 98 0 22 chr12 139121438 139121756 -5160733 + AluY SINE Alu 1 311 0 2212 131 40 40 chr12 139122768 139123142 -5159347 - THE1C LTR MaLR -1 374 1 452 274 19 0 chr12 139123924 139124030 -5158459 + MLT1I LTR MaLR 34 141 -268 1177 202 20 84 chr12 139124657 139125003 -5157486 - L1M4 LINE L1 -955 5191 4868 906 184 34 0 chr12 139125002 139125181 -5157308 + L1M2 LINE L1 5433 5617 -674 * 2120 174 72 4 chr12 139125914 139126314 -5156175 - MSTA LTR MaLR -4 424 5 537 196 21 35 chr12 139127264 139127407 -5155082 - MER53 DNA DNA -44 145 5 512 229 37 0 chr12 139128087 139128196 -5154293 - AluJb SINE Alu -2 310 198 455 264 55 77 chr12 139128785 139129020 -5153469 - MLT1L LTR MaLR -267 348 119 1187 93 7 6 chr12 139129342 139129517 -5152972 + L1PA6 LINE L1 5787 5930 -224 439 326 41 0 chr12 139129651 139129823 -5152666 - MIR SINE MIR -36 226 48 44 0 0 0 chr12 139129983 139130027 -5152462 + AT_rich Low_complexity Low_complexity 1 44 0 554 261 67 76 chr12 139130028 139130266 -5152223 + L1ME3A LINE L1 5551 5786 -384 22 88 0 0 chr12 139130269 139130326 -5152163 + AT_rich Low_complexity Low_complexity 1 57 0 1960 160 0 0 chr12 139130370 139130657 -5151832 + AluSx SINE Alu 1 287 -25 292 278 109 52 chr12 139130796 139131044 -5151445 + L1ME3A LINE L1 5904 6165 -5 373 279 71 13 chr12 139131570 139131724 -5150765 + L1ME LINE L1 5500 5662 -459 1936 243 67 0 chr12 139132717 139133207 -5149282 - MER74A LTR ERVL 0 558 36 1844 159 0 22 chr12 139133268 139133583 -5148906 - AluJo SINE Alu 0 312 5 8732 165 14 16 chr12 139134038 139136512 -5145977 + L1PB1 LINE L1 3506 5974 -177 43581 33 22 1 chr12 139136512 139142538 -5139951 + L1PA3 LINE L1 1 6154 -1 1062 143 66 11 chr12 139142556 139142738 -5139751 + L1PB1 LINE L1 5959 6150 -1 320 209 86 57 chr12 139142844 139142949 -5139540 + MIR SINE MIR 48 155 -107 820 189 0 0 chr12 139142954 139143081 -5139408 + FLAM_C SINE Alu 1 127 -16 788 257 162 19 chr12 139143190 139143681 -5138808 + MLT1G1 LTR MaLR 1 582 -13 215 286 0 0 chr12 139143925 139144002 -5138487 + (TA)n Simple_repeat Simple_repeat 2 78 0 2134 111 0 14 chr12 139145056 139145374 -5137115 - AluSx SINE Alu 0 314 1 1536 164 7 11 chr12 139145589 139145858 -5136631 - AluSx SINE Alu -1 311 44 2433 50 3 10 chr12 139146517 139146816 -5135673 + AluY SINE Alu 1 297 -14 6380 90 23 4 chr12 139146869 139147871 -5134618 - L1PA12 LINE L1 -11 6157 5130 394 183 0 0 chr12 139148893 139148964 -5133525 - MLT1F1 LTR MaLR -114 453 383 335 335 13 13 chr12 139149119 139149274 -5133215 - MLT1E LTR MaLR -431 162 8 954 175 3 0 chr12 139151240 139151554 -5130935 + (TCCA)n Simple_repeat Simple_repeat 1 315 0 656 298 71 34 chr12 139151555 139151964 -5130525 - L2 LINE L2 -1 3312 2889 353 185 85 31 chr12 139152796 139152926 -5129563 + L1MC5 LINE L1 7601 7737 -224 716 293 82 68 chr12 139154659 139155161 -5127328 - MLT1J LTR MaLR -2 509 1 2222 115 0 0 chr12 139155481 139155777 -5126712 + AluSx SINE Alu 1 296 -16 201 333 21 0 chr12 139155846 139155942 -5126547 + MIR SINE MIR 146 243 -19 221 257 266 0 chr12 139156636 139156745 -5125744 + MIR SINE MIR 125 262 0 358 301 34 0 chr12 139156939 139157085 -5125404 - Charlie8 DNA MER1_type -2227 190 40 248 288 76 27 chr12 139158580 139158764 -5123725 - L1ME LINE L1 -218 5903 5711 420 350 35 5 chr12 139158772 139158972 -5123517 - MIR SINE MIR 0 262 57 218 371 43 7 chr12 139159381 139159521 -5122968 + MIR3 SINE MIR 5 149 -59 295 316 96 18 chr12 139159593 139159811 -5122678 + MLT1K LTR MaLR 13 247 -341 2240 115 3 13 chr12 139160753 139161067 -5121422 - AluSx SINE Alu -1 311 1 383 272 49 106 chr12 139161544 139161642 -5120847 - L1MC5 LINE L1 -25 7936 7834 2186 126 0 0 chr12 139161642 139161943 -5120546 + AluSx SINE Alu 1 301 -11 383 272 49 106 chr12 139161943 139162404 -5120085 - L1MC5 LINE L1 -127 7834 7417 1988 239 47 25 chr12 139162404 139162952 -5119537 + MER68 LTR ERV1 1 560 -2 383 272 49 106 chr12 139162952 139163042 -5119447 - L1MC5 LINE L1 -544 7417 7323 271 238 139 40 chr12 139163254 139163355 -5119134 + LTR50 LTR ERVL 6 116 -679 284 227 36 36 chr12 139163646 139163756 -5118733 + LTR41 LTR ERVL 585 694 -79 24 0 0 0 chr12 139163967 139163991 -5118498 + AT_rich Low_complexity Low_complexity 1 24 0 529 258 82 124 chr12 139164093 139164249 -5118240 - ERVL LTR ERVL -455 5309 5148 1189 175 53 7 chr12 139164249 139164534 -5117955 - L1MA8 LINE L1 0 6291 5994 529 258 82 124 chr12 139164534 139164827 -5117662 - ERVL LTR ERVL -616 5148 4879 546 257 16 76 chr12 139165137 139165386 -5117103 - MER112 DNA MER1_type -13 247 14 606 252 10 73 chr12 139165576 139165782 -5116707 - MIR SINE MIR -26 236 44 265 288 25 0 chr12 139165984 139166064 -5116425 + MER117 DNA MER1_type 74 155 -42 548 266 108 84 chr12 139166119 139166499 -5115990 - L2 LINE L2 -34 3279 2891 1587 169 14 11 chr12 139166635 139166913 -5115576 - AluJb SINE Alu -22 290 12 23 0 0 0 chr12 139166929 139166952 -5115537 + AT_rich Low_complexity Low_complexity 1 23 0 761 275 33 0 chr12 139167205 139167416 -5115073 + MER20 DNA MER1_type 2 219 0 503 16 16 0 chr12 139168202 139168266 -5114223 + (TG)n Simple_repeat Simple_repeat 2 66 0 269 191 64 21 chr12 139168480 139168574 -5113915 + L1ME LINE L1 5566 5663 -458 343 340 57 24 chr12 139168582 139168794 -5113695 + MLT1K LTR MaLR 1 219 -369 219 290 149 9 chr12 139169013 139169120 -5113369 + L2 LINE L2 3187 3308 -5 263 229 36 136 chr12 139169131 139169271 -5113218 + MLT1K LTR MaLR 426 551 -37 1615 212 12 17 chr12 139169394 139169739 -5112750 + MER61A LTR ERV1 1 343 0 2292 96 3 0 chr12 139170150 139170441 -5112048 - AluSq SINE Alu -20 293 2 463 294 144 56 chr12 139170486 139170915 -5111574 - L2 LINE L2 0 3313 2847 2359 93 7 0 chr12 139172010 139172311 -5110178 - AluSc SINE Alu -6 303 1 308 332 34 15 chr12 139172792 139173117 -5109372 + L1M4 LINE L1 4855 5185 -961 481 178 56 0 chr12 139173118 139173225 -5109264 + L1MA9 LINE L1 6194 6306 -6 21 0 0 0 chr12 139173269 139173290 -5109199 + AT_rich Low_complexity Low_complexity 1 21 0 332 296 22 28 chr12 139173373 139173552 -5108937 + L1ME3A LINE L1 5965 6142 -28 1342 304 60 45 chr12 139173614 139174542 -5107947 + L1ME1 LINE L1 34 975 -5421 207 328 9 17 chr12 139174571 139174607 -5107882 + (CATA)n Simple_repeat Simple_repeat 4 39 -79 1787 186 34 3 chr12 139174607 139174961 -5107528 - MER47A DNA MER2_type -1 365 1 207 328 9 17 chr12 139174961 139175040 -5107449 + (CATA)n Simple_repeat Simple_repeat 39 118 0 4887 260 50 43 chr12 139175071 139176062 -5106427 + L1ME1 LINE L1 1018 2001 -4214 1716 167 16 16 chr12 139176062 139176380 -5106109 + L1PB4 LINE L1 5831 6148 -8 4887 260 50 43 chr12 139176380 139177190 -5105299 + L1ME1 LINE L1 2001 2804 -3411 582 23 60 30 chr12 139177190 139177323 -5105166 + (TA)n Simple_repeat Simple_repeat 2 138 0 4887 260 50 43 chr12 139177323 139179312 -5103177 + L1ME1 LINE L1 2804 4781 -1434 1199 252 66 74 chr12 139179305 139179663 -5102826 + L1ME1 LINE L1 5206 5565 -670 * 2187 128 0 0 chr12 139179663 139179968 -5102521 + AluSx SINE Alu 1 305 -7 1199 252 66 74 chr12 139179968 139180352 -5102137 + L1ME1 LINE L1 5565 5939 -296 2002 156 0 0 chr12 139180352 139180647 -5101842 + AluJo SINE Alu 1 295 -17 1199 252 66 74 chr12 139180647 139180789 -5101700 + L1ME1 LINE L1 5939 6081 -154 1428 106 0 0 chr12 139180810 139180999 -5101490 + AluSp SINE Alu 107 295 -18 495 279 0 0 chr12 139181000 139181147 -5101342 + L1MA10 LINE L1 6186 6332 -2 243 0 0 0 chr12 139181182 139181209 -5101280 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 2137 126 3 0 chr12 139181708 139182010 -5100479 + AluSq SINE Alu 1 303 -10 1000 171 164 19 chr12 139182492 139182755 -5099734 - L1MB2 LINE L1 -7 6164 5864 2387 80 0 0 chr12 139184009 139184308 -5098181 - AluY SINE Alu -12 299 1 431 299 47 0 chr12 139184360 139184487 -5098002 - MIR SINE MIR -118 144 12 393 296 48 37 chr12 139184965 139185154 -5097335 + MIR SINE MIR 14 204 -58 565 297 0 44 chr12 139185177 139185406 -5097083 - MER58A DNA MER1_type 0 224 6 464 160 49 62 chr12 139186714 139186858 -5095631 - L1MC3 LINE L1 -29 7756 7615 201 199 0 90 chr12 139186892 139187058 -5095431 + (TTA)n Simple_repeat Simple_repeat 1 151 0 1075 220 93 37 chr12 139187169 139187524 -5094965 + MLT1D LTR MaLR 6 380 -125 468 152 105 0 chr12 139187802 139187907 -5094582 + MLT1D LTR MaLR 390 505 0 188 361 113 0 chr12 139188011 139188108 -5094381 + L2 LINE L2 3162 3269 -3 297 75 0 0 chr12 139188678 139188718 -5093771 + (CA)n Simple_repeat Simple_repeat 1 40 0 605 136 10 0 chr12 139188964 139189067 -5093422 + MSTB LTR MaLR 4 107 -319 1362 172 68 65 chr12 139189105 139189442 -5093047 + MSTB LTR MaLR 89 426 0 351 353 24 24 chr12 139189975 139190142 -5092347 + MIR SINE MIR 27 193 -69 606 183 167 11 chr12 139190322 139190502 -5091987 + MER44D DNA MER2_type 1 478 -131 810 147 0 0 chr12 139190516 139190632 -5091857 - FLAM_C SINE Alu -17 126 11 732 199 7 0 chr12 139190643 139190784 -5091705 + MER44D DNA MER2_type 464 605 0 436 243 112 44 chr12 139190918 139191169 -5091320 + L1MEd LINE L1 989 1256 -4863 2040 109 32 7 chr12 139191238 139191523 -5090966 + AluSg SINE Alu 1 292 -18 306 0 0 0 chr12 139191524 139191558 -5090931 + (TA)n Simple_repeat Simple_repeat 1 34 0 558 79 0 0 chr12 139191558 139191634 -5090855 + (TG)n Simple_repeat Simple_repeat 1 76 0 415 327 137 32 chr12 139191845 139191861 -5090628 + L1MEd LINE L1 2218 2231 -3898 2457 94 6 3 chr12 139191861 139192203 -5090286 + L1PA11 LINE L1 5830 6172 -2 415 327 137 32 chr12 139192203 139192731 -5089758 + L1MEd LINE L1 2231 2703 -3426 1158 155 10 14 chr12 139192731 139192938 -5089551 - L1PA13 LINE L1 0 6163 5958 1660 165 4 4 chr12 139192943 139193210 -5089279 - AluJo SINE Alu -14 298 32 415 327 137 32 chr12 139193210 139193588 -5088901 + L1MEd LINE L1 2706 3244 -2885 526 143 19 0 chr12 139193591 139193696 -5088793 + (TG)n Simple_repeat Simple_repeat 2 108 0 2269 113 0 3 chr12 139194088 139194389 -5088100 - AluSq SINE Alu -13 300 1 23 68 0 0 chr12 139194729 139194773 -5087716 + AT_rich Low_complexity Low_complexity 1 44 0 270 250 36 36 chr12 139194804 139194888 -5087601 - MIR SINE MIR -64 198 115 342 221 48 9 chr12 139195032 139195173 -5087316 + L1MEc LINE L1 1890 1991 -4549 351 65 0 0 chr12 139195183 139195229 -5087260 + (CA)n Simple_repeat Simple_repeat 2 47 0 275 258 140 14 chr12 139195760 139195981 -5086508 + L1MEc LINE L1 2624 2872 -3668 1833 130 85 31 chr12 139196052 139196406 -5086083 - THE1C LTR MaLR -2 373 1 1602 84 13 4 chr12 139197357 139197596 -5084893 - L1PB2 LINE L1 -38 6113 5873 504 272 119 38 chr12 139197719 139197900 -5084589 + MIR SINE MIR 9 215 -47 450 0 0 0 chr12 139197900 139197950 -5084539 + (TA)n Simple_repeat Simple_repeat 2 51 0 504 272 119 38 chr12 139197950 139198003 -5084486 + MIR SINE MIR 215 262 0 512 356 8 25 chr12 139198604 139198840 -5083649 + MIR SINE MIR 23 254 -8 216 0 0 0 chr12 139198840 139198864 -5083625 + (TTA)n Simple_repeat Simple_repeat 1 24 0 867 269 54 64 chr12 139198867 139199369 -5083120 - LTR33 LTR ERVL -2 519 23 301 223 100 46 chr12 139199597 139199727 -5082762 - MIR SINE MIR 0 262 126 343 157 86 0 chr12 139199863 139199933 -5082556 - L2 LINE L2 -25 3288 3213 2074 185 104 27 chr12 139199945 139200366 -5082123 + L1MB8 LINE L1 5558 6034 -144 5393 142 80 29 chr12 139200366 139201336 -5081153 + LTR28 LTR ERV1 1 1020 0 2074 185 104 27 chr12 139201336 139201472 -5081017 + L1MB8 LINE L1 6034 6158 -20 1340 103 5 11 chr12 139201472 139201657 -5080832 - AluSg/x SINE Alu -17 295 112 2272 145 75 5 chr12 139201804 139202203 -5080286 + MSTA LTR MaLR 2 428 0 338 246 62 33 chr12 139203624 139203896 -5078593 + L1MEc LINE L1 3527 3806 -2734 198 305 64 53 chr12 139203978 139204165 -5078324 + L2 LINE L2 3047 3235 -78 2044 92 4 0 chr12 139205669 139205931 -5076558 - AluSp SINE Alu -17 296 34 282 338 0 68 chr12 139206080 139206172 -5076317 + MIR SINE MIR 7 87 -175 1994 154 0 0 chr12 139206172 139206470 -5076019 + AluSx SINE Alu 1 298 -14 282 338 0 68 chr12 139206470 139206525 -5075964 + MIR SINE MIR 87 144 -118 31 76 0 0 chr12 139206832 139206898 -5075591 + AT_rich Low_complexity Low_complexity 1 66 0 30 45 0 0 chr12 139207498 139207542 -5074947 + AT_rich Low_complexity Low_complexity 1 44 0 203 173 96 96 chr12 139208178 139208282 -5074207 - MER91C DNA MER1_type 0 140 37 4669 161 49 13 chr12 139208513 139209384 -5073105 - MER4D LTR ERV1 0 903 1 198 239 0 0 chr12 139209580 139209626 -5072863 + L2 LINE L2 3264 3309 -4 202 291 81 12 chr12 139210546 139210632 -5071857 + L2 LINE L2 3175 3266 -47 3173 214 31 20 chr12 139211978 139212806 -5069683 - L1MB8 LINE L1 -15 6163 5327 288 221 13 0 chr12 139212935 139213012 -5069477 - Charlie1 DNA MER1_type -35 2726 2649 704 191 77 4 chr12 139213064 139213310 -5069179 - Charlie1 DNA MER1_type -116 2645 2382 2809 220 45 7 chr12 139213681 139214280 -5068209 - LTR26E LTR ERV1 0 622 1 600 303 91 37 chr12 139214405 139214644 -5067845 - LTR16A LTR ERVL -2 448 183 5334 74 17 54 chr12 139214644 139215361 -5067128 - LTR8 LTR ERV1 -1 690 1 600 303 91 37 chr12 139215361 139215471 -5067018 - LTR16A LTR ERVL -267 183 80 252 273 26 0 chr12 139215514 139215591 -5066898 - MIR SINE MIR -70 192 114 1378 190 51 60 chr12 139215672 139216052 -5066437 + MER67C LTR ERV1 2 403 -243 369 0 0 0 chr12 139216102 139216143 -5066346 + (CA)n Simple_repeat Simple_repeat 1 41 0 291 250 183 0 chr12 139216147 139216251 -5066238 + MER67D LTR ERV1 392 514 0 822 229 121 45 chr12 139216395 139216793 -5065696 + MLT1C LTR MaLR 7 434 -33 25 51 0 0 chr12 139216917 139216956 -5065533 + AT_rich Low_complexity Low_complexity 1 39 0 1810 160 10 13 chr12 139216956 139217269 -5065220 - AluSx SINE Alu 0 312 1 2575 55 0 7 chr12 139217536 139217845 -5064644 - AluY SINE Alu -2 309 3 2553 193 57 85 chr12 139217948 139218690 -5063799 + LTR8A LTR ERV1 1 721 -6 1583 73 0 97 chr12 139219220 139219468 -5063021 - AluSc SINE Alu -13 296 73 206 349 119 8 chr12 139219809 139219935 -5062554 + MIR3 SINE MIR 16 155 -53 400 301 126 19 chr12 139219949 139220015 -5062474 - MER113 DNA MER1_type? -19 502 444 2049 96 46 0 chr12 139220015 139220295 -5062194 + AluSc SINE Alu 1 293 -16 400 301 126 19 chr12 139220295 139220640 -5061849 - MER113 DNA MER1_type? -77 444 47 324 273 76 126 chr12 139220797 139221258 -5061231 + MLT1J LTR MaLR 74 511 0 3118 60 0 11 chr12 139221593 139221974 -5060515 - L1PA8 LINE L1 -3 6169 5793 23 33 0 0 chr12 139222182 139222212 -5060277 + AT_rich Low_complexity Low_complexity 1 30 0 235 261 0 14 chr12 139222637 139222706 -5059783 - Charlie8 DNA MER1_type -2152 265 198 646 268 137 31 chr12 139223313 139223694 -5058795 - MLT1L LTR MaLR -34 581 161 3958 194 49 21 chr12 139223998 139224839 -5057650 + L1MC1 LINE L1 5467 6330 -3 4516 121 7 29 chr12 139224841 139225533 -5056956 - L1PA13 LINE L1 0 6163 5487 2272 88 0 3 chr12 139226205 139226501 -5055988 + AluY SINE Alu 1 295 -16 253 355 36 29 chr12 139226846 139226984 -5055505 + MIR3 SINE MIR 69 207 -1 1762 150 0 35 chr12 139227218 139227504 -5054985 + AluJb SINE Alu 29 304 -8 745 283 32 9 chr12 139228080 139228299 -5054190 + MER58A DNA MER1_type 1 224 0 207 0 0 0 chr12 139228553 139228576 -5053913 + (A)n Simple_repeat Simple_repeat 1 23 0 1590 212 11 95 chr12 139228707 139229151 -5053338 + MLT1C LTR MaLR 60 466 -1 1254 255 69 37 chr12 139229194 139229621 -5052868 - MLT1D LTR MaLR 0 505 164 1963 98 8 4 chr12 139229621 139229887 -5052602 + AluSg SINE Alu 40 306 -4 1254 255 69 37 chr12 139229887 139230057 -5052432 - MLT1D LTR MaLR -341 164 1 552 277 46 39 chr12 139230282 139230564 -5051925 + MLT1J LTR MaLR 228 511 0 305 309 40 24 chr12 139231260 139231386 -5051103 - MIR SINE MIR -120 142 15 219 69 0 0 chr12 139231626 139231655 -5050834 + (CA)n Simple_repeat Simple_repeat 2 30 0 503 191 29 29 chr12 139231659 139231764 -5050725 - L1M3 LINE L1 -396 5772 5668 654 211 15 0 chr12 139231767 139231900 -5050589 + L1MB1 LINE L1 6033 6167 -1 1232 206 23 46 chr12 139232063 139232369 -5050120 - AluJo SINE Alu -13 299 1 321 329 92 6 chr12 139232418 139232582 -5049907 - MIR SINE MIR -4 258 81 2374 53 0 0 chr12 139234205 139234513 -5047976 + AluY SINE Alu 1 308 0 248 304 111 33 chr12 139235633 139235876 -5046613 - MLT1J LTR MaLR -13 498 237 196 279 0 0 chr12 139236453 139236496 -5045993 + L2 LINE L2 3216 3258 -14 2749 270 105 29 chr12 139236706 139237280 -5045209 + L1MEc LINE L1 17 546 -5671 2059 130 104 27 chr12 139237280 139237618 -5044871 - THE1B LTR MaLR 0 364 1 11866 93 26 3 chr12 139237618 139239163 -5043326 - THE1B-int LTR MaLR 0 1580 1 2422 110 48 22 chr12 139239163 139239518 -5042971 - THE1B LTR MaLR 0 364 1 2749 270 105 29 chr12 139239518 139239916 -5042573 + L1MEc LINE L1 546 967 -5250 567 96 0 0 chr12 139239916 139239999 -5042490 + (CA)n Simple_repeat Simple_repeat 2 84 0 2749 270 105 29 chr12 139239999 139240276 -5042213 + L1MEc LINE L1 967 1222 -4995 522 284 44 22 chr12 139240768 139240951 -5041538 + MIR SINE MIR 18 204 -58 775 277 66 54 chr12 139241349 139241699 -5040790 - L1ME1 LINE L1 0 6166 5813 1228 277 70 3 chr12 139241699 139242082 -5040407 + L1ME LINE L1 5364 5772 -394 435 54 0 40 chr12 139242091 139242165 -5040324 + (TTTA)n Simple_repeat Simple_repeat 3 73 0 517 108 4 26 chr12 139242182 139242270 -5040219 + THE1B LTR MaLR 89 177 -178 318 265 16 97 chr12 139242296 139242481 -5040008 + L2 LINE L2 3144 3313 0 306 312 50 37 chr12 139242499 139242717 -5039772 - LTR67 LTR ERVL -107 450 230 2386 215 53 0 chr12 139242882 139243430 -5039059 + L1MB5 LINE L1 5598 6174 0 279 0 0 0 chr12 139243608 139243639 -5038850 + (A)n Simple_repeat Simple_repeat 1 31 0 2729 96 11 11 chr12 139244007 139244371 -5038118 + THE1B LTR MaLR 1 364 0 302 191 0 0 chr12 139244520 139244584 -5037905 - L1MC1 LINE L1 -232 6101 6047 268 83 42 0 chr12 139244723 139244771 -5037718 + T-rich Low_complexity Low_complexity 5 54 0 1756 152 16 16 chr12 139244795 139245098 -5037391 - L1MC1 LINE L1 0 6333 6031 6279 109 23 0 chr12 139245864 139246954 -5035535 - L1PB1 LINE L1 -4 6147 5049 2895 179 3 58 chr12 139246954 139247606 -5034883 + L1PB1 LINE L1 4436 5051 -1095 372 315 9 9 chr12 139248530 139248641 -5033848 + L2 LINE L2 3162 3272 0 280 326 20 10 chr12 139248948 139249046 -5033443 - MIR3 SINE MIR -33 175 77 2340 70 3 27 chr12 139249127 139249427 -5033062 + AluY SINE Alu 1 293 -18 1001 145 6 0 chr12 139249432 139249591 -5032898 - L1MA4A LINE L1 -12 6291 6132 4962 120 5 51 chr12 139249591 139249712 -5032777 + L1PA16 LINE L1 5364 5489 -677 2167 136 0 0 chr12 139249712 139250021 -5032468 + AluSx SINE Alu 1 309 -3 4962 120 5 51 chr12 139250021 139250724 -5031765 + L1PA16 LINE L1 5489 6150 -16 550 134 31 0 chr12 139250794 139250891 -5031598 - L1MA4A LINE L1 -152 6151 6052 2333 151 97 16 chr12 139250892 139251335 -5031154 + LTR22B LTR ERVK 14 492 0 881 90 23 73 chr12 139251335 139251512 -5030977 - L1MA4A LINE L1 -244 6059 5892 365 284 40 27 chr12 139252150 139252298 -5030191 - MIR SINE MIR -64 198 49 358 317 84 62 chr12 139253025 139253194 -5029295 - L1MC4a LINE L1 -1852 5956 5792 2175 106 13 7 chr12 139253194 139253495 -5028994 - AluSx SINE Alu -9 303 1 358 317 84 62 chr12 139253495 139253776 -5028713 - L1MC4a LINE L1 -2016 5792 5496 1396 116 0 42 chr12 139253835 139254051 -5028438 - THE1A LTR MaLR 0 355 149 4743 131 6 58 chr12 139254051 139255344 -5027145 + pTR5 LTR ERV1 743 2283 -155 1177 87 6 35 chr12 139255347 139255519 -5026970 - THE1A LTR MaLR -188 167 1 371 328 57 24 chr12 139255714 139255953 -5026536 - MIR SINE MIR -1 261 17 993 176 12 6 chr12 139256041 139256211 -5026278 + AluSc SINE Alu 124 294 -15 291 250 58 0 chr12 139256238 139256358 -5026131 - L1MDa LINE L1 -3742 2798 2672 315 273 105 41 chr12 139256363 139256535 -5025954 - L1MDa LINE L1 -3892 2648 2466 364 324 20 0 chr12 139256815 139256917 -5025572 + MIR SINE MIR 47 150 -112 336 83 0 0 chr12 139257655 139257703 -5024786 + (CA)n Simple_repeat Simple_repeat 1 48 0 207 390 29 29 chr12 139259278 139259414 -5023075 + L2 LINE L2 3129 3264 -8 376 156 22 0 chr12 139259780 139259870 -5022619 + (TG)n Simple_repeat Simple_repeat 2 93 0 24 53 0 0 chr12 139259913 139259951 -5022538 + AT_rich Low_complexity Low_complexity 1 38 0 2215 86 17 3 chr12 139260152 139260443 -5022046 - AluSq SINE Alu -18 295 1 2165 129 0 3 chr12 139261490 139261800 -5020689 - AluSx SINE Alu -3 309 1 3205 155 2 8 chr12 139262457 139262946 -5019543 + MER66B LTR ERV1 1 486 0 288 223 11 32 chr12 139263546 139263640 -5018849 - L1MC5 LINE L1 -50 7911 7820 1861 129 66 3 chr12 139264268 139264555 -5017934 - AluSx SINE Alu -7 305 1 268 278 37 56 chr12 139264599 139264707 -5017782 + L2 LINE L2 2550 2655 -659 289 353 130 25 chr12 139264879 139265202 -5017287 + L2 LINE L2 2914 3270 -2 203 271 0 0 chr12 139266006 139266054 -5016435 + GA-rich Low_complexity Low_complexity 2 49 0 507 224 0 31 chr12 139266058 139266156 -5016333 + MER58C DNA MER1_type 121 215 0 275 344 31 6 chr12 139266156 139266316 -5016173 + L1ME3 LINE L1 3995 4158 -1988 2025 81 0 0 chr12 139266320 139266581 -5015908 - L1PA7 LINE L1 -331 5823 5563 2787 41 3 0 chr12 139266583 139266903 -5015586 + L1PA7 LINE L1 5832 6152 -2 400 221 47 6 chr12 139266943 139267173 -5015316 + (TA)n Simple_repeat Simple_repeat 1 239 0 1304 285 78 29 chr12 139267175 139268736 -5013753 + L1ME3 LINE L1 4228 5866 -296 2494 69 0 3 chr12 139269090 139269395 -5013094 + AluY SINE Alu 1 304 -7 24 0 0 0 chr12 139271036 139271060 -5011429 + AT_rich Low_complexity Low_complexity 1 24 0 286 313 15 8 chr12 139271456 139271587 -5010902 + L1MB2 LINE L1 5731 5862 -300 628 260 113 34 chr12 139271766 139272147 -5010342 + HAL1 LINE L1 1485 1895 -612 837 298 41 30 chr12 139272325 139272688 -5009801 + MER68 LTR ERV1 194 560 -2 8465 45 16 0 chr12 139272698 139273761 -5008728 - L1P LINE L1 -1051 5095 4016 2494 129 13 8 chr12 139273942 139274315 -5008174 + L1PA15 LINE L1 5786 6160 -5 432 269 65 68 chr12 139274339 139274648 -5007841 + HAL1 LINE L1 2200 2507 0 348 191 0 0 chr12 139274712 139274796 -5007693 + (CA)n Simple_repeat Simple_repeat 2 85 0 265 297 203 8 chr12 139275167 139275285 -5007204 + MIR SINE MIR 48 188 -74 549 201 10 24 chr12 139275288 139275531 -5006958 + L1MB2 LINE L1 5841 6143 -28 28 29 0 0 chr12 139275665 139275700 -5006789 + AT_rich Low_complexity Low_complexity 1 35 0 1857 132 17 24 chr12 139275718 139276014 -5006475 + AluSx SINE Alu 1 294 -18 3043 127 26 54 chr12 139276601 139277105 -5005384 + LTR2B LTR ERV1 1 490 0 2529 181 22 78 chr12 139277110 139277741 -5004748 - LTR9 LTR ERV1 -16 596 1 219 275 75 38 chr12 139278031 139278111 -5004378 - MIR3 SINE MIR -40 168 86 2310 80 7 0 chr12 139278371 139278658 -5003831 + AluSp SINE Alu 1 289 -24 23 33 0 0 chr12 139278672 139278702 -5003787 + AT_rich Low_complexity Low_complexity 1 30 0 180 276 82 61 chr12 139279672 139279770 -5002719 - L2 LINE L2 -9 3263 3164 363 44 0 0 chr12 139280402 139280447 -5002042 + (CA)n Simple_repeat Simple_repeat 1 45 0 955 246 19 93 chr12 139280898 139281264 -5001225 - MER102b DNA MER1_type -2 339 1 420 320 77 43 chr12 139281380 139281755 -5000734 - LTR16A LTR ERVL 0 450 63 1192 189 43 23 chr12 139281962 139282415 -5000074 - MER34 LTR ERV1 -27 515 27 2198 123 3 0 chr12 139283346 139283647 -4998842 - AluSx SINE Alu -8 304 3 270 308 58 29 chr12 139285398 139285502 -4996987 + MIR SINE MIR 41 147 -61 2125 138 0 0 chr12 139286228 139286540 -4995949 + AluSx SINE Alu 1 312 0 1299 178 22 26 chr12 139286753 139287023 -4995466 - L1MA9 LINE L1 0 6312 6044 1371 299 102 68 chr12 139287314 139288637 -4993852 + L1ME2 LINE L1 107 1515 -4881 2729 32 0 3 chr12 139288637 139288948 -4993541 + AluY SINE Alu 1 310 -1 1371 299 102 68 chr12 139288948 139289518 -4992971 + L1ME2 LINE L1 1515 2064 -4332 948 229 62 26 chr12 139289525 139289865 -4992624 - L1M4 LINE L1 -1444 4702 4351 1731 230 65 27 chr12 139289944 139290601 -4991888 + L1ME2 LINE L1 4877 5580 -653 2153 82 38 14 chr12 139290601 139290892 -4991597 + AluSp SINE Alu 1 298 -15 1731 230 65 27 chr12 139290892 139291026 -4991463 + L1ME2 LINE L1 5580 5707 -526 342 69 375 14 chr12 139291026 139291098 -4991391 + MER4A LTR ERV1 1 98 -566 1790 137 6 41 chr12 139291098 139291455 -4991034 + MER4A LTR ERV1 261 663 -1 1474 187 38 3 chr12 139291612 139291901 -4990588 + LTR1B LTR ERV1 528 826 0 391 271 50 44 chr12 139291901 139292082 -4990407 + L1ME2 LINE L1 5983 6164 -69 2898 145 81 52 chr12 139292182 139292776 -4989713 + LTR36 LTR ERV1 1 611 0 1839 98 54 25 chr12 139292897 139293200 -4989289 - AluSp SINE Alu 0 311 1 1879 142 31 0 chr12 139294988 139295277 -4987212 + AluSx SINE Alu 1 298 -14 198 356 124 19 chr12 139295861 139296184 -4986305 - L2 LINE L2 -433 2881 2525 3168 169 115 27 chr12 139296700 139297036 -4985453 - LTR8A LTR ERV1 0 727 422 264 91 0 0 chr12 139297036 139297080 -4985409 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3168 169 115 27 chr12 139297080 139297410 -4985079 - LTR8A LTR ERV1 -305 422 2 356 304 34 47 chr12 139298049 139298197 -4984292 - MIR3 SINE MIR -42 166 21 464 274 9 9 chr12 139298205 139298318 -4984171 + MER81 DNA DNA 1 113 -1 544 318 40 14 chr12 139298362 139298585 -4983904 + MIR SINE MIR 1 229 -33 1026 171 36 18 chr12 139298686 139298908 -4983581 - MER96B DNA MER1_type? 0 417 192 869 232 85 9 chr12 139299172 139299396 -4983093 - L1MB5 LINE L1 -278 5896 5656 * 1008 222 48 8 chr12 139299387 139299635 -4982854 + L1MB5 LINE L1 5909 6166 -8 584 312 112 5 chr12 139300162 139300367 -4982122 - MIR SINE MIR -8 254 28 1429 69 16 11 chr12 139300440 139300628 -4981861 + LTR9 LTR ERV1 1 189 -423 730 155 26 0 chr12 139300729 139300845 -4981644 + LTR9 LTR ERV1 494 612 0 2010 122 0 17 chr12 139301467 139301761 -4980728 + AluSx SINE Alu 1 289 -23 237 65 0 0 chr12 139301813 139301844 -4980645 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 4981 122 3 13 chr12 139302001 139302699 -4979790 + LTR8 LTR ERV1 1 691 0 322 262 122 67 chr12 139302720 139302884 -4979605 + MLT1K LTR MaLR 284 456 -132 2275 137 36 22 chr12 139303633 139303991 -4978498 - THE1B LTR MaLR 0 364 2 180 293 17 0 chr12 139304427 139304485 -4978004 - MIR SINE MIR -72 136 78 1980 98 95 0 chr12 139305010 139305284 -4977205 + AluSx SINE Alu 1 300 -12 1985 94 20 47 chr12 139305590 139305931 -4976558 + AluSg SINE Alu 1 310 0 234 91 0 0 chr12 139308513 139308546 -4973943 + (TG)n Simple_repeat Simple_repeat 2 34 0 561 257 54 28 chr12 139308711 139308943 -4973546 - MER93b LTR ERV1 -85 315 76 2175 78 36 4 chr12 139309239 139309520 -4972969 - AluSc SINE Alu -16 293 4 326 331 40 20 chr12 139309703 139309854 -4972635 + MLT1K LTR MaLR 127 280 -308 431 242 135 34 chr12 139309904 139310082 -4972407 + MLT1K LTR MaLR 376 571 -17 289 339 83 0 chr12 139310101 139310210 -4972279 - L2 LINE L2 -41 3272 3155 447 187 37 58 chr12 139310580 139310605 -4971884 + L1ME2 LINE L1 5739 5763 -401 2390 167 18 0 chr12 139310605 139311001 -4971488 - MER57A LTR ERV1 0 403 1 447 187 37 58 chr12 139311001 139311135 -4971354 + L1ME2 LINE L1 5763 5894 -270 1350 204 40 85 chr12 139311142 139311613 -4970876 - LTR7 LTR ERV1 0 450 1 669 334 82 8 chr12 139311615 139311995 -4970494 - LTR16B LTR ERVL 0 464 57 1301 74 0 6 chr12 139312122 139312285 -4970204 + AluY SINE Alu 133 294 -17 1001 145 6 0 chr12 139312290 139312449 -4970040 - L1MA4A LINE L1 -12 6291 6132 903 66 0 0 chr12 139312449 139312570 -4969919 + L1P4 LINE L1 5364 5484 -682 2156 127 0 0 chr12 139312570 139312870 -4969619 + AluSx SINE Alu 1 300 -12 1101 181 159 19 chr12 139314121 139314391 -4968098 + L1MB2 LINE L1 5864 6171 0 1005 211 0 39 chr12 139514586 139514818 -4767671 + MLT1D LTR MaLR 283 505 0 180 304 217 14 chr12 139514952 139515159 -4767330 + MIR SINE MIR 14 262 0 929 114 0 0 chr12 139515335 139515466 -4767023 + AluSq/x SINE Alu 1 131 -182 305 295 91 84 chr12 139516030 139516315 -4766174 + MLT1K LTR MaLR 12 298 -290 185 220 0 17 chr12 139516318 139516377 -4766112 + CT-rich Low_complexity Low_complexity 3 60 0 926 230 96 13 chr12 139516433 139516672 -4765817 - L1ME LINE L1 -404 5762 5504 5827 194 68 58 chr12 139516673 139518413 -4764076 + L1MDa LINE L1 677 2435 -4105 724 238 31 16 chr12 139518628 139519001 -4763488 + L1MDa LINE L1 2444 2820 -3720 340 157 20 98 chr12 139519009 139519111 -4763378 + MLT1I LTR MaLR 127 220 -189 1084 281 32 83 chr12 139519366 139519921 -4762568 + MLT1K LTR MaLR 48 574 -14 262 312 248 5 chr12 139519958 139520160 -4762329 - MIR SINE MIR 0 262 12 200 250 112 69 chr12 139520128 139520244 -4762245 - MIR SINE MIR -36 226 106 * 458 292 53 12 chr12 139520478 139520649 -4761840 - MIR SINE MIR -16 246 69 500 217 23 27 chr12 139521677 139522080 -4760409 + (CA)n Simple_repeat Simple_repeat 1 401 0 380 244 24 0 chr12 139522096 139522426 -4760063 + (CA)n Simple_repeat Simple_repeat 1 338 0 1240 221 22 44 chr12 139522444 139522760 -4759729 - MER68 LTR ERV1 -219 343 35 449 292 9 0 chr12 139522927 139523040 -4759449 - L2 LINE L2 0 3313 3200 1833 103 69 0 chr12 139523992 139524288 -4758201 - AluY SINE Alu 0 314 1 2610 212 18 42 chr12 139524340 139524911 -4757578 + MER68 LTR ERV1 6 562 0 295 255 106 11 chr12 139524911 139525005 -4757484 - MIR SINE MIR -99 163 61 259 227 0 124 chr12 139525234 139525331 -4757158 + MER91B DNA MER1_type 1 85 -105 313 275 60 24 chr12 139525340 139525507 -4756982 + MER104 DNA Tc2 8 180 0 269 323 0 10 chr12 139525559 139525655 -4756834 + MER91B DNA MER1_type 90 184 -6 279 0 0 0 chr12 139526495 139526526 -4755963 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr12 139526558 139526580 -4755909 + AT_rich Low_complexity Low_complexity 1 22 0 793 231 56 41 chr12 139526792 139526987 -4755502 - MER20 DNA MER1_type -21 198 1 320 232 30 30 chr12 139527212 139527311 -4755178 - MLT1H1 LTR MaLR -66 489 391 233 254 0 56 chr12 139527336 139527407 -4755082 - MLT1H1 LTR MaLR -303 287 221 1073 263 69 49 chr12 139527753 139528201 -4754288 - MLT1C LTR MaLR 0 467 11 334 297 27 0 chr12 139528911 139529022 -4753467 - MIR3 SINE MIR -6 202 89 373 339 0 6 chr12 139530177 139530354 -4752135 + (TATAA)n Simple_repeat Simple_repeat 2 177 0 * 426 327 0 6 chr12 139530232 139530521 -4751968 + A-rich Low_complexity Low_complexity 1 287 0 534 248 45 13 chr12 139531229 139531395 -4751094 + MLT1L LTR MaLR 114 270 -342 * 601 171 85 0 chr12 139531387 139531516 -4750973 + MLT1D LTR MaLR 192 331 -174 297 307 15 22 chr12 139531629 139531766 -4750723 + MLT1L LTR MaLR 476 611 -4 534 289 28 83 chr12 139532019 139532081 -4750408 + MIR SINE MIR 6 70 -192 2093 170 154 0 chr12 139532081 139532517 -4749972 + MLT1D LTR MaLR 3 505 0 534 289 28 83 chr12 139532517 139532680 -4749809 + MIR SINE MIR 70 218 -44 2831 125 16 5 chr12 139532680 139533103 -4749386 + MSTA LTR MaLR 1 428 0 534 289 28 83 chr12 139533103 139533129 -4749360 + MIR SINE MIR 218 244 -18 2268 77 0 26 chr12 139533237 139533548 -4748941 + AluY SINE Alu 1 303 -8 2437 129 57 26 chr12 139533690 139534208 -4748281 - MLT2A2 LTR ERVL 0 554 1 1879 148 7 0 chr12 139534641 139534938 -4747551 + AluSx SINE Alu 1 299 -13 208 221 26 0 chr12 139536228 139536305 -4746184 + GA-rich Low_complexity Low_complexity 1 79 0 24 0 0 0 chr12 139536733 139536757 -4745732 + AT_rich Low_complexity Low_complexity 1 24 0 2403 40 3 0 chr12 139537081 139537377 -4745112 + AluY SINE Alu 1 297 -14 189 107 0 0 chr12 139537394 139537422 -4745067 + (TG)n Simple_repeat Simple_repeat 1 28 0 324 140 105 0 chr12 139537574 139537631 -4744858 - MLT1B LTR MaLR -35 355 293 2077 181 63 34 chr12 139537633 139537801 -4744688 - MSTB LTR MaLR 0 426 264 2293 126 93 15 chr12 139537801 139538197 -4744292 + MSTA LTR MaLR 1 427 -1 2077 181 63 34 chr12 139538197 139538254 -4744235 - MSTB LTR MaLR -162 264 210 1948 133 0 0 chr12 139538254 139538554 -4743935 - AluSx SINE Alu -11 301 2 2077 181 63 34 chr12 139538554 139538654 -4743835 - MSTB LTR MaLR -216 210 114 2651 133 29 5 chr12 139538654 139539075 -4743414 + MER57B LTR ERV1 4 434 0 2077 181 63 34 chr12 139539075 139539161 -4743328 - MSTB LTR MaLR -312 114 1 1124 231 20 27 chr12 139539161 139539456 -4743033 - MLT1B LTR MaLR -95 295 3 259 226 16 16 chr12 139539786 139539848 -4742641 - L2 LINE L2 -6 3307 3246 760 138 121 40 chr12 139539852 139539921 -4742568 + LTR51 LTR ERV1 5 67 -604 2559 14 0 0 chr12 139539921 139540267 -4742222 + AluYb8 SINE Alu 1 346 0 760 138 121 40 chr12 139540267 139540370 -4742119 + LTR51 LTR ERV1 67 192 -479 * 1698 190 3 19 chr12 139540368 139540653 -4741836 + LTR51 LTR ERV1 360 641 -30 4095 86 13 4 chr12 139540653 139541202 -4741287 + MER41A LTR ERV1 1 554 0 1698 190 3 19 chr12 139541202 139541232 -4741257 + LTR51 LTR ERV1 641 670 -1 581 283 134 30 chr12 139541256 139541759 -4740730 - L2 LINE L2 -65 3248 2701 1755 229 52 42 chr12 139541788 139542286 -4740203 + MLT1D LTR MaLR 1 503 -2 227 224 20 71 chr12 139542288 139542386 -4740103 + MER102b DNA MER1_type 243 335 -6 256 277 92 67 chr12 139542646 139542841 -4739648 - MER105 DNA DNA -2 202 3 194 333 46 23 chr12 139542877 139542964 -4739525 - MIR SINE MIR -113 149 61 267 158 58 125 chr12 139543919 139544039 -4738450 - LTR48 LTR ERV1 -96 691 580 267 231 29 67 chr12 139544053 139544157 -4738332 - LTR48 LTR ERV1 -309 478 379 1164 141 84 0 chr12 139544175 139544366 -4738123 - MER34C LTR ERV1 -374 211 5 754 186 0 0 chr12 139544370 139544510 -4737979 + L1MB4 LINE L1 6040 6179 -1 649 285 74 59 chr12 139544539 139545012 -4737477 - L2 LINE L2 -6 3307 2828 519 243 33 40 chr12 139545280 139545432 -4737057 + MER5B DNA MER1_type 7 157 -21 736 278 16 11 chr12 139545930 139546117 -4736372 - MIR SINE MIR -62 200 13 1760 194 37 8 chr12 139546189 139546544 -4735945 - MLT1A1 LTR MaLR 0 365 1 482 291 23 23 chr12 139546856 139547031 -4735458 - MIR SINE MIR -75 187 13 21 36 0 0 chr12 139547091 139547119 -4735370 + AT_rich Low_complexity Low_complexity 1 28 0 1168 262 48 36 chr12 139548057 139548473 -4734016 + MLT1J1 LTR MaLR 17 437 -9 254 342 9 27 chr12 139548923 139549034 -4733455 - L2 LINE L2 -208 3064 2956 353 296 17 9 chr12 139549127 139549242 -4733247 + L3b LINE CR1 1334 1449 -134 201 306 83 0 chr12 139549298 139549370 -4733119 + L2 LINE L2 3156 3233 -39 387 232 12 0 chr12 139549414 139549496 -4732993 + MER112 DNA MER1_type 1 83 -177 225 291 4 13 chr12 139549497 139549744 -4732745 + (CA)n Simple_repeat Simple_repeat 1 244 0 503 263 17 11 chr12 139549760 139549939 -4732550 + (CA)n Simple_repeat Simple_repeat 1 180 0 349 321 0 18 chr12 139549868 139550033 -4732456 + (CATA)n Simple_repeat Simple_repeat 2 163 0 * 1227 178 46 0 chr12 139550079 139550298 -4732191 - MLT1D LTR MaLR 0 505 277 3057 99 14 7 chr12 139550301 139550848 -4731641 + LTR66 LTR ERVL 1 610 0 939 172 23 111 chr12 139550860 139551121 -4731368 - MLT1D LTR MaLR -267 238 1 225 171 0 0 chr12 139551301 139551336 -4731153 - LTR16A1 LTR ERVL -214 243 209 297 245 201 7 chr12 139552410 139552549 -4729940 - L1ME4a LINE L1 0 6121 5956 1088 224 23 0 chr12 139553117 139553336 -4729153 - MER58A DNA MER1_type 0 224 1 1213 284 103 8 chr12 139553814 139554290 -4728199 + LTR33 LTR ERVL 1 521 0 1305 214 96 50 chr12 139554357 139554473 -4728016 + MLT1C LTR MaLR 6 115 -352 4077 95 11 2 chr12 139554473 139555022 -4727467 + MER41A LTR ERV1 1 554 0 1305 214 96 50 chr12 139555022 139555344 -4727145 + MLT1C LTR MaLR 115 464 -3 390 228 189 28 chr12 139556044 139556224 -4726265 + Charlie8 DNA MER1_type 58 266 -2151 479 260 0 32 chr12 139556322 139556445 -4726044 - L2 LINE L2 0 3313 3195 272 164 70 35 chr12 139557512 139557683 -4724806 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 365 136 57 51 chr12 139557797 139557973 -4724516 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 350 139 69 35 chr12 139558116 139558289 -4724200 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 314 144 64 40 chr12 139558459 139558632 -4723857 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 314 144 64 40 chr12 139558698 139558871 -4723618 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 305 329 27 54 chr12 139559180 139559329 -4723160 + HAL1b LINE L1 1190 1334 -14 1643 214 63 112 chr12 139560387 139560961 -4721528 - MLT1E2 LTR MaLR 0 626 81 850 192 20 0 chr12 139560961 139561112 -4721377 + AluJb SINE Alu 139 292 -20 423 327 25 4 chr12 139562880 139563043 -4719446 + MIR SINE MIR 16 179 -71 194 374 27 14 chr12 139563160 139563307 -4719182 - MIR3 SINE MIR -1 207 59 266 236 123 28 chr12 139563400 139563506 -4718983 - MLT1L LTR MaLR -71 544 429 2577 168 37 35 chr12 139563526 139564127 -4718362 + pTR5 LTR ERV1 743 1344 -1094 3387 127 157 91 chr12 139564143 139564914 -4717575 + LTR12 LTR ERV1 5 826 0 21 0 0 0 chr12 139565449 139565470 -4717019 + AT_rich Low_complexity Low_complexity 1 21 0 189 196 0 0 chr12 139565798 139565844 -4716645 + (CACCAT)n Simple_repeat Simple_repeat 1 46 0 266 381 0 0 chr12 139565848 139565982 -4716507 + (CCA)n Simple_repeat Simple_repeat 2 135 0 * 464 304 0 27 chr12 139565912 139566175 -4716314 + (CACCAT)n Simple_repeat Simple_repeat 1 255 0 681 237 68 61 chr12 139566280 139566530 -4715959 - MLT1E2 LTR MaLR -5 604 333 241 284 158 39 chr12 139566727 139566854 -4715635 - MIR SINE MIR -108 154 13 262 300 54 8 chr12 139566921 139567051 -4715438 - MIR SINE MIR -80 182 47 1986 208 140 5 chr12 139567674 139568117 -4714372 - MLT1D LTR MaLR -2 503 1 3381 150 25 81 chr12 139568547 139569279 -4713210 + LTR8 LTR ERV1 1 691 0 237 244 0 0 chr12 139569830 139569916 -4712573 + GA-rich Low_complexity Low_complexity 1 86 0 393 296 75 30 chr12 139570734 139570933 -4711556 - MIR SINE MIR -33 229 22 441 284 123 76 chr12 139571078 139571843 -4710646 + HAL1 LINE L1 5 805 -1702 433 268 152 31 chr12 139571916 139572140 -4710349 + HAL1 LINE L1 732 982 -1525 1115 284 54 29 chr12 139572275 139572719 -4709770 - MER74B LTR ERVL -93 529 75 983 242 30 95 chr12 139572740 139573268 -4709221 + HAL1 LINE L1 1040 1533 -974 2040 171 35 31 chr12 139573282 139573831 -4708658 - MLT2A2 LTR ERVL 0 554 1 521 195 92 130 chr12 139574054 139574316 -4708173 + LTR33A LTR ERVL 127 378 -145 2147 173 34 31 chr12 139574319 139574869 -4707620 - MLT2A2 LTR ERVL 0 554 1 418 239 72 7 chr12 139574869 139575007 -4707482 + LTR33A LTR ERVL 377 523 0 293 238 75 89 chr12 139575008 139575222 -4707267 - MIR SINE MIR -33 229 19 470 330 43 10 chr12 139575897 139576106 -4706383 - MIR SINE MIR -15 247 32 802 260 39 0 chr12 139576515 139576723 -4705766 + MIR SINE MIR 25 240 -22 237 268 0 0 chr12 139577515 139577586 -4704903 + L1ME LINE L1 5245 5315 -831 737 190 25 6 chr12 139577930 139578088 -4704401 + L1ME LINE L1 5310 5470 -696 551 88 0 55 chr12 139578094 139578185 -4704304 + L1PA10 LINE L1 6082 6167 -1 580 271 62 7 chr12 139578229 139578502 -4703987 + L1M4 LINE L1 4303 4590 -1556 1105 223 48 0 chr12 139578530 139578799 -4703690 + L1MC3 LINE L1 7497 7778 -7 27 29 0 0 chr12 139578834 139578868 -4703621 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr12 139579093 139579126 -4703363 + AT_rich Low_complexity Low_complexity 1 33 0 1513 187 0 8 chr12 139579560 139579828 -4702661 + AluJo SINE Alu 25 290 -22 1864 165 32 32 chr12 139580574 139580949 -4701540 - THE1C LTR MaLR 0 375 1 192 40 0 0 chr12 139581004 139581029 -4701460 + (TG)n Simple_repeat Simple_repeat 2 26 0 423 149 23 58 chr12 139581378 139581465 -4701024 + MLT1K LTR MaLR 144 227 -361 418 115 149 0 chr12 139582033 139582120 -4700369 + L1ME LINE L1 5674 5773 -391 352 100 0 0 chr12 139582120 139582176 -4700313 - MLT2A2 LTR ERVL 0 453 405 1853 228 138 34 chr12 139582797 139583364 -4699125 + MLT1E2 LTR MaLR 1 626 0 1713 147 3 118 chr12 139584676 139585057 -4697432 + MER1B DNA MER1_type 1 337 0 2324 147 2 35 chr12 139585608 139585786 -4696703 - Tigger2 DNA MER2_type -2 2716 2534 2262 107 0 0 chr12 139585786 139586084 -4696405 - AluSq SINE Alu -15 298 1 2324 147 2 35 chr12 139586084 139586301 -4696188 - Tigger2 DNA MER2_type -184 2534 2334 1953 112 3 30 chr12 139586318 139586613 -4695876 - MER1A DNA MER1_type 0 529 243 358 227 0 0 chr12 139586861 139586936 -4695553 + MER89 LTR ERV1 183 257 -302 253 222 91 10 chr12 139586946 139587045 -4695444 - L1M4 LINE L1 -998 5148 5042 1299 215 24 33 chr12 139587204 139587534 -4694955 + MER89 LTR ERV1 224 550 -9 405 272 128 42 chr12 139587893 139588158 -4694331 + LTR16C LTR ERVL 163 450 -41 713 130 41 0 chr12 139588288 139588411 -4694078 - MER41B LTR ERV1 0 635 508 3038 100 74 0 chr12 139588531 139588991 -4693498 - MER41A LTR ERV1 -60 494 1 23 0 0 0 chr12 139589165 139589188 -4693301 + AT_rich Low_complexity Low_complexity 1 23 0 2171 97 3 10 chr12 139589328 139589626 -4692863 + AluSq SINE Alu 1 296 -17 414 325 74 12 chr12 139589664 139590040 -4692449 + L1MC4 LINE L1 7545 8031 -11 368 292 128 82 chr12 139590118 139590508 -4691981 + MLT1L LTR MaLR 1 408 -207 203 133 0 44 chr12 139591228 139591273 -4691216 + (TTTTTG)n Simple_repeat Simple_repeat 5 47 0 183 365 129 18 chr12 139591287 139591457 -4691032 + MIR SINE MIR 22 210 -52 279 0 0 0 chr12 139591502 139591533 -4690956 + (ATG)n Simple_repeat Simple_repeat 3 33 0 585 169 16 57 chr12 139591881 139592190 -4690299 - AluSx SINE Alu 0 493 190 672 186 0 8 chr12 139592191 139592309 -4690180 - AluSx SINE Alu -194 118 2 241 313 47 31 chr12 139592328 139592456 -4690033 - MIR SINE MIR -125 137 8 25 51 0 0 chr12 139592932 139592971 -4689518 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr12 139593335 139593364 -4689125 + AT_rich Low_complexity Low_complexity 1 29 0 2072 192 43 11 chr12 139594372 139594815 -4687674 + L1MA9 LINE L1 5856 6312 0 407 277 40 39 chr12 139594895 139595051 -4687438 - MIR SINE MIR -62 146 25 251 329 12 0 chr12 139595857 139595939 -4686550 - MIR SINE MIR -98 164 82 278 62 188 0 chr12 139595966 139596014 -4686475 + MER63 DNA MER1_type 692 748 -314 227 224 17 0 chr12 139596021 139596079 -4686410 + MER63 DNA MER1_type 979 1037 -24 468 314 20 0 chr12 139596107 139596260 -4686229 + MIR SINE MIR 76 231 -31 804 223 56 15 chr12 139596474 139596671 -4685818 - MER3 DNA MER1_type 0 209 5 2287 68 24 10 chr12 139596814 139597109 -4685380 + AluY SINE Alu 1 299 -12 21 0 0 0 chr12 139597196 139597217 -4685272 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 139597267 139597288 -4685201 + AT_rich Low_complexity Low_complexity 1 21 0 2048 132 24 0 chr12 139597481 139597770 -4684719 - AluSx SINE Alu -16 296 1 356 248 15 21 chr12 139598115 139598258 -4684231 + MER63 DNA MER1_type 696 1062 0 2167 119 0 10 chr12 139598620 139598922 -4683567 - AluSx SINE Alu -13 299 1 25 31 0 0 chr12 139599295 139599327 -4683162 + AT_rich Low_complexity Low_complexity 1 32 0 2288 117 3 0 chr12 139599338 139599646 -4682843 + AluSx SINE Alu 1 309 -3 189 0 0 0 chr12 139600626 139600647 -4681842 + (TA)n Simple_repeat Simple_repeat 2 22 0 561 309 58 5 chr12 139600811 139601034 -4681455 - MIR SINE MIR -4 258 24 238 250 83 53 chr12 139601240 139601372 -4681117 - L2 LINE L2 -1 3271 3136 374 343 51 19 chr12 139601553 139601769 -4680720 - MIR SINE MIR 0 262 40 1028 126 34 0 chr12 139602023 139602198 -4680291 - L1MA7 LINE L1 -5 6286 6106 1896 154 58 0 chr12 139602341 139602634 -4679855 + AluSx SINE Alu 1 310 -2 2725 133 26 0 chr12 139602696 139603111 -4679378 - MSTB LTR MaLR 0 426 1 889 247 154 49 chr12 139604443 139604909 -4677580 + LTR33 LTR ERVL 7 521 0 2425 103 3 0 chr12 139605804 139606115 -4676374 - AluSx SINE Alu 0 312 1 504 332 26 30 chr12 139606240 139606505 -4675984 + MLT1I LTR MaLR 74 337 -72 497 262 48 71 chr12 139606551 139606761 -4675728 + MIR SINE MIR 35 239 -23 200 211 0 0 chr12 139607788 139607826 -4674663 + (CA)n Simple_repeat Simple_repeat 2 39 0 310 241 92 69 chr12 139608914 139609175 -4673314 + HAL1 LINE L1 2225 2491 -16 701 151 53 7 chr12 139609193 139609345 -4673144 - Charlie5 DNA MER1_type -83 2529 2371 1004 247 90 34 chr12 139609345 139609650 -4672839 - L1MC4 LINE L1 -1053 6989 6703 231 36 0 0 chr12 139609650 139609678 -4672811 + (TG)n Simple_repeat Simple_repeat 1 28 0 1004 247 90 34 chr12 139609678 139609711 -4672778 - L1MC4 LINE L1 -1339 6703 6673 225 0 0 0 chr12 139609711 139609736 -4672753 + (TC)n Simple_repeat Simple_repeat 2 26 0 1004 247 90 34 chr12 139609736 139609752 -4672737 - L1MC4 LINE L1 -1369 6673 6614 195 115 0 58 chr12 139609840 139609892 -4672597 + (TA)n Simple_repeat Simple_repeat 2 50 0 2118 151 30 35 chr12 139611183 139611635 -4670854 - MLT2A2 LTR ERVL -93 461 1 1747 188 53 10 chr12 139611640 139612033 -4670456 + L1MB7 LINE L1 5775 6184 0 565 123 19 0 chr12 139612168 139612274 -4670215 + CT-rich Low_complexity Low_complexity 1 108 0 1490 196 31 0 chr12 139613174 139613465 -4669024 - AluSx SINE Alu -7 305 6 340 151 0 0 chr12 139613635 139613688 -4668801 + T-rich Low_complexity Low_complexity 1 53 0 227 184 104 0 chr12 139613869 139614032 -4668457 + (CACAT)n Simple_repeat Simple_repeat 1 180 0 * 298 149 68 34 chr12 139613933 139614081 -4668408 + (CTCA)n Simple_repeat Simple_repeat 2 154 0 632 175 0 0 chr12 139614087 139614190 -4668299 - AluJb SINE Alu -208 104 2 332 242 82 71 chr12 139614486 139614668 -4667821 - MER112 DNA MER1_type -28 232 49 2012 144 0 10 chr12 139614678 139614984 -4667505 - AluJo SINE Alu -9 303 1 1439 235 39 63 chr12 139615350 139615809 -4666680 + MLT1C LTR MaLR 3 450 -17 501 284 75 75 chr12 139615853 139616203 -4666286 - Charlie8 DNA MER1_type -1942 475 93 26 30 0 0 chr12 139616203 139616236 -4666253 + AT_rich Low_complexity Low_complexity 1 33 0 2259 120 0 7 chr12 139616272 139616581 -4665908 - AluSx SINE Alu 0 312 6 1643 201 18 3 chr12 139616595 139616933 -4665556 - L1PA16 LINE L1 -16 6150 5808 2362 132 25 6 chr12 139617683 139618040 -4664449 + THE1B LTR MaLR 1 364 0 743 274 92 58 chr12 139618123 139618623 -4663866 + LTR33 LTR ERVL 5 521 0 300 269 25 59 chr12 139618652 139618771 -4663718 - L1MC4 LINE L1 -1315 6727 6613 303 246 39 46 chr12 139619103 139619233 -4663256 - MER53 DNA DNA -38 151 23 272 224 8 0 chr12 139619406 139619540 -4662949 + (TG)n Simple_repeat Simple_repeat 2 136 0 469 302 0 0 chr12 139619586 139619765 -4662724 + (TG)n Simple_repeat Simple_repeat 1 179 0 334 313 6 6 chr12 139619815 139619991 -4662498 + (TG)n Simple_repeat Simple_repeat 1 176 0 455 276 0 6 chr12 139620005 139620186 -4662303 + (TG)n Simple_repeat Simple_repeat 1 180 0 480 268 0 6 chr12 139620212 139620391 -4662098 + (TG)n Simple_repeat Simple_repeat 1 178 0 536 116 15 67 chr12 139620579 139620852 -4661637 + (TG)n Simple_repeat Simple_repeat 1 258 0 286 146 36 104 chr12 139622534 139622726 -4659763 + (TA)n Simple_repeat Simple_repeat 2 180 0 304 263 11 32 chr12 139622730 139622825 -4659664 + L1MC4 LINE L1 6609 6701 -1341 202 236 74 128 chr12 139622967 139623115 -4659374 - MIR SINE MIR 0 262 123 189 0 0 0 chr12 139625368 139625389 -4657100 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1837 89 0 36 chr12 139625391 139625671 -4656818 - AluSx SINE Alu -5 307 38 387 308 83 12 chr12 139626075 139626244 -4656245 - MER5A DNA MER1_type -6 183 3 214 284 92 28 chr12 139626244 139626348 -4656141 + MIR SINE MIR 81 191 -71 435 225 0 0 chr12 139626351 139626431 -4656058 - L2 LINE L2 -2 3311 3232 1514 238 123 5 chr12 139626605 139627026 -4655463 + MLT2B1 LTR ERVL 5 475 -45 214 274 14 14 chr12 139627029 139627102 -4655387 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 1941 104 10 14 chr12 139627230 139627519 -4654970 + THE1A LTR MaLR 1 288 -67 2081 197 31 7 chr12 139627623 139628045 -4654444 + L1MB5 LINE L1 5683 6114 -60 207 0 0 0 chr12 139628048 139628071 -4654418 + (CA)n Simple_repeat Simple_repeat 1 23 0 266 262 177 21 chr12 139628255 139628396 -4654093 - LTR33 LTR ERVL -27 494 332 242 340 28 14 chr12 139628508 139628652 -4653837 - LTR33 LTR ERVL -352 169 24 2200 99 0 3 chr12 139628809 139629103 -4653386 - AluSq SINE Alu -15 298 6 183 80 0 0 chr12 139629496 139629521 -4652968 + (TC)n Simple_repeat Simple_repeat 2 26 0 459 181 16 28 chr12 139630078 139630260 -4652229 + (TG)n Simple_repeat Simple_repeat 1 180 0 234 121 35 17 chr12 139630338 139630396 -4652093 + (TG)n Simple_repeat Simple_repeat 2 60 0 420 181 48 12 chr12 139630458 139630798 -4651691 + (TG)n Simple_repeat Simple_repeat 1 352 0 321 151 50 0 chr12 139630855 139630974 -4651515 + (TG)n Simple_repeat Simple_repeat 1 125 0 342 220 59 22 chr12 139632889 139632991 -4649498 + L1MC4 LINE L1 1995 6983 -1339 214 218 18 0 chr12 139632998 139633053 -4649436 + (TA)n Simple_repeat Simple_repeat 2 57 0 2331 189 12 50 chr12 139634047 139634545 -4647944 + MLT2B2 LTR ERVL 2 480 -35 343 126 0 6 chr12 139634577 139634648 -4647841 + MLT2B2 LTR ERVL 452 515 0 349 247 33 0 chr12 139634673 139634823 -4647666 + GA-rich Low_complexity Low_complexity 2 156 0 1520 109 45 0 chr12 139634874 139635094 -4647395 + MER30 DNA MER1_type 1 230 0 249 226 71 24 chr12 139635364 139635448 -4647041 - L1M3de LINE L1 -6464 189 102 284 335 109 34 chr12 139636181 139636474 -4646015 + MLT1K LTR MaLR 2 316 -272 353 239 22 0 chr12 139636680 139636772 -4645717 - MIR SINE MIR -73 189 96 1534 93 25 10 chr12 139637602 139637999 -4644490 + L1PA10 LINE L1 5672 6163 -5 566 282 84 74 chr12 139638093 139638377 -4644112 + MLT2E LTR ERVL 1 287 -341 319 274 43 0 chr12 139638440 139638557 -4643932 - L1ME LINE L1 -2379 3701 3580 * 2335 36 0 11 chr12 139638553 139638832 -4643657 - L1P2 LINE L1 -431 5724 5449 1261 40 0 0 chr12 139638832 139638978 -4643511 + L1PA4 LINE L1 6006 6154 -1 442 287 6 24 chr12 139638983 139639150 -4643339 - L1ME LINE L1 -2499 3581 3418 1573 256 138 38 chr12 139639150 139639709 -4642780 + MLT1E2 LTR MaLR 1 615 -11 2185 248 56 62 chr12 139639723 139640907 -4641582 - L1ME LINE L1 -2672 3408 2233 481 136 3 18 chr12 139640908 139641000 -4641489 - MLT1C LTR MaLR 0 467 398 328 114 0 0 chr12 139641000 139641044 -4641445 - L1M2 LINE L1 -651 5649 5606 1264 183 35 42 chr12 139641044 139641329 -4641160 - AluJo SINE Alu -23 289 7 1184 193 80 18 chr12 139641332 139641606 -4640883 - L1M2 LINE L1 -683 5608 5318 1330 245 32 111 chr12 139641679 139642039 -4640450 - L1ME LINE L1 -5463 607 319 2042 140 0 0 chr12 139642039 139642347 -4640142 + AluSx SINE Alu 1 308 -4 1330 245 32 111 chr12 139642347 139642635 -4639854 - L1ME LINE L1 -5751 319 10 685 232 74 26 chr12 139642750 139642940 -4639549 + MLT2E LTR ERVL 426 624 -4 460 296 35 45 chr12 139644682 139644881 -4637608 - MLT1I LTR MaLR 0 409 213 394 259 171 19 chr12 139645131 139645289 -4637200 + MER5A DNA MER1_type 2 183 -6 883 248 26 13 chr12 139645296 139645530 -4636959 + MIR SINE MIR 18 254 -8 464 108 36 0 chr12 139645533 139645616 -4636873 + (ATGGTG)n Simple_repeat Simple_repeat 1 86 0 1076 128 6 0 chr12 139645616 139645795 -4636694 + (ATG)n Simple_repeat Simple_repeat 1 180 0 709 258 181 0 chr12 139646354 139646575 -4635914 + MIR SINE MIR 2 262 0 371 230 163 15 chr12 139646678 139646813 -4635676 - L2 LINE L2 0 3313 3159 252 87 0 65 chr12 139647126 139647172 -4635317 + MIR SINE MIR 95 137 -125 462 329 78 23 chr12 139647204 139647511 -4634978 + L2 LINE L2 2395 2718 -596 703 274 68 21 chr12 139647519 139647840 -4634649 + L2 LINE L2 2920 3313 0 231 211 67 77 chr12 139647847 139647951 -4634538 + MIR SINE MIR 136 238 -24 293 62 21 0 chr12 139650804 139650852 -4631637 + (CGGGGG)n Simple_repeat Simple_repeat 5 53 0 31 0 0 0 chr12 139651046 139651077 -4631412 + GC_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr12 139651138 139651163 -4631326 + GC_rich Low_complexity Low_complexity 1 25 0 214 211 145 26 chr12 139651917 139651993 -4630496 + MIR SINE MIR 118 202 -60 427 364 0 0 chr12 139652585 139652728 -4629761 + G-rich Low_complexity Low_complexity 1 143 0 270 0 0 0 chr12 139653068 139653098 -4629391 + (TG)n Simple_repeat Simple_repeat 2 31 0 340 314 51 35 chr12 139654021 139654276 -4628213 - MER46C DNA MER2_type -70 268 10 1985 120 3 0 chr12 139654693 139655028 -4627461 + AluSx SINE Alu 1 336 0 358 158 24 24 chr12 139655074 139655156 -4627333 + L1MA8 LINE L1 6210 6291 0 372 188 135 0 chr12 139655156 139655252 -4627237 - L1M4 LINE L1 -2168 3978 3870 3037 247 70 10 chr12 139655753 139656797 -4625692 - L1ME1 LINE L1 -6 6229 5124 1753 231 45 5 chr12 139656801 139657558 -4624931 - L1ME1 LINE L1 -3518 2697 1949 496 149 31 161 chr12 139658452 139658613 -4623876 + MER5B DNA MER1_type 13 152 -26 3465 143 2 8 chr12 139658875 139659405 -4623084 + MER1A DNA MER1_type 1 527 0 860 245 124 38 chr12 139659487 139659895 -4622594 - MLT1C LTR MaLR -2 465 14 216 0 0 0 chr12 139660617 139660641 -4621848 + (CA)n Simple_repeat Simple_repeat 1 24 0 916 281 92 42 chr12 139660870 139661325 -4621164 - MLT1K LTR MaLR -4 584 107 1760 180 66 28 chr12 139662398 139662470 -4620019 + MLT2D LTR ERVL 3 71 -343 324 0 0 0 chr12 139662470 139662506 -4619983 + (TG)n Simple_repeat Simple_repeat 2 37 0 1760 180 66 28 chr12 139662506 139662828 -4619661 + MLT2D LTR ERVL 71 412 -2 22 0 0 0 chr12 139662998 139663020 -4619469 + AT_rich Low_complexity Low_complexity 1 22 0 793 262 104 31 chr12 139663140 139663707 -4618782 + L2 LINE L2 2711 3312 -1 394 311 23 15 chr12 139664487 139664619 -4617870 - MLT1K LTR MaLR -298 290 158 247 303 123 25 chr12 139665081 139665243 -4617246 + MIR SINE MIR 20 197 -65 596 324 61 21 chr12 139665256 139665583 -4616906 + LTR33 LTR ERVL 10 349 -172 1943 258 98 7 chr12 139665834 139665988 -4616501 - L1MC4 LINE L1 -150 7892 7754 2035 135 40 50 chr12 139665988 139666367 -4616122 - THE1C LTR MaLR 0 375 1 1943 258 98 7 chr12 139666367 139666812 -4615677 - L1MC4 LINE L1 -288 7754 7238 1445 214 84 3 chr12 139666814 139667169 -4615320 - L1MC4 LINE L1 -957 7085 6702 246 81 0 0 chr12 139667246 139667283 -4615206 + (TC)n Simple_repeat Simple_repeat 2 38 0 580 209 82 14 chr12 139667313 139667482 -4615007 - L1MC4a LINE L1 -1148 6654 6483 604 110 40 20 chr12 139667859 139667970 -4614519 + MLT2B2 LTR ERVL 313 515 0 205 355 184 0 chr12 139668044 139668196 -4614293 - MIR SINE MIR -58 204 25 1622 163 3 28 chr12 139668577 139668859 -4613630 + AluJb SINE Alu 7 281 -31 1277 139 83 0 chr12 139668863 139669093 -4613396 + L1MA5 LINE L1 6049 6297 -3 892 141 0 22 chr12 139669359 139669543 -4612946 + (TC)n Simple_repeat Simple_repeat 1 180 0 570 176 0 0 chr12 139669547 139669666 -4612823 + CT-rich Low_complexity Low_complexity 2 120 0 730 132 201 60 chr12 139670618 139670799 -4611690 - MER20 DNA MER1_type 0 219 1 1014 167 71 184 chr12 139670857 139671450 -4611039 - L1MC4 LINE L1 0 8042 7517 2417 86 3 0 chr12 139671599 139671901 -4610588 - AluSp SINE Alu -10 303 1 225 326 7 14 chr12 139672498 139672636 -4609853 + (CTCA)n Simple_repeat Simple_repeat 4 140 0 * 451 324 6 22 chr12 139672556 139672738 -4609751 + (CA)n Simple_repeat Simple_repeat 1 179 0 294 218 46 46 chr12 139672807 139672894 -4609595 - MER4-int LTR ERV1 -5437 1161 1075 1843 136 168 11 chr12 139673705 139674074 -4608415 - MSTA LTR MaLR 0 428 2 287 189 57 75 chr12 139674861 139674967 -4607522 - MER20 DNA MER1_type -88 131 28 537 267 96 67 chr12 139675244 139675734 -4606755 + LTR33A LTR ERVL 13 516 -7 433 286 8 0 chr12 139675992 139676111 -4606378 + L2 LINE L2 3187 3306 -7 272 198 44 159 chr12 139676412 139676594 -4605895 - MER112 DNA MER1_type -95 165 5 22 0 0 0 chr12 139677090 139677112 -4605377 + AT_rich Low_complexity Low_complexity 1 22 0 1735 212 17 3 chr12 139678068 139678427 -4604062 - MLT1A1 LTR MaLR 0 365 2 476 72 14 0 chr12 139678516 139678585 -4603904 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 21 0 0 0 chr12 139678613 139678634 -4603855 + AT_rich Low_complexity Low_complexity 1 21 0 949 149 14 14 chr12 139678757 139678905 -4603584 - FRAM SINE Alu -27 149 2 202 189 0 0 chr12 139679006 139679043 -4603446 - MIR SINE MIR -115 147 111 557 271 92 18 chr12 139679783 139680001 -4602488 - MLT1L LTR MaLR -6 609 376 27 49 0 0 chr12 139680424 139680465 -4602024 + AT_rich Low_complexity Low_complexity 1 41 0 205 288 27 14 chr12 139681703 139681776 -4600713 + L2 LINE L2 2685 2758 -556 472 240 48 20 chr12 139681978 139682124 -4600365 - L1MD3 LINE L1 -10 7985 7836 1573 204 0 13 chr12 139684314 139684627 -4597862 + AluJo SINE Alu 1 309 -3 2160 141 33 25 chr12 139685316 139685677 -4596812 - THE1B LTR MaLR 0 364 1 937 250 48 29 chr12 139687267 139687539 -4594950 + MLT1H LTR MaLR 71 347 -202 428 169 48 12 chr12 139687583 139687666 -4594823 + MLT1H LTR MaLR 463 548 -1 2192 116 30 3 chr12 139687894 139688196 -4594293 + AluSx SINE Alu 1 310 -2 708 149 53 0 chr12 139688657 139688771 -4593718 + FLAM_C SINE Alu 2 121 -22 25 65 0 0 chr12 139688771 139688817 -4593672 + AT_rich Low_complexity Low_complexity 1 46 0 2365 70 10 3 chr12 139689763 139690061 -4592428 - AluY SINE Alu -11 300 1 357 279 205 43 chr12 139691439 139691697 -4590792 + MLT1K LTR MaLR 56 355 -233 21 0 0 0 chr12 139691851 139691872 -4590617 + AT_rich Low_complexity Low_complexity 1 21 0 235 268 0 0 chr12 139692054 139692110 -4590379 + L2 LINE L2 3257 3312 -1 2079 190 27 60 chr12 139692919 139693279 -4589210 - L1MB5 LINE L1 0 6174 5839 2330 102 0 9 chr12 139693279 139693594 -4588895 - AluSx SINE Alu 0 312 1 2079 190 27 60 chr12 139693594 139693765 -4588724 - L1MB5 LINE L1 -335 5839 5664 1370 230 20 14 chr12 139693815 139693867 -4588622 + L1MA4 LINE L1 5951 6001 -299 2379 149 26 35 chr12 139693867 139694296 -4588193 - MSTB LTR MaLR 0 426 2 1370 230 20 14 chr12 139694296 139694591 -4587898 + L1MA4 LINE L1 6001 6300 0 21 36 0 0 chr12 139694594 139694622 -4587867 + AT_rich Low_complexity Low_complexity 1 28 0 263 214 80 54 chr12 139695591 139695703 -4586786 - MLT1K LTR MaLR -90 498 384 664 149 78 39 chr12 139695703 139695857 -4586632 + MLT1C LTR MaLR 4 163 -304 1318 174 9 0 chr12 139695860 139696079 -4586410 - AluJb SINE Alu -6 306 86 1137 242 53 23 chr12 139696079 139696381 -4586108 + MLT1C LTR MaLR 157 467 0 180 278 28 28 chr12 139696861 139696933 -4585556 - MIR SINE MIR -150 112 41 279 248 132 16 chr12 139697185 139697306 -4585183 - MLT1L LTR MaLR -448 167 33 24 0 0 0 chr12 139697440 139697464 -4585025 + AT_rich Low_complexity Low_complexity 1 24 0 1514 201 131 15 chr12 139698052 139698449 -4584040 + MLT1C LTR MaLR 17 459 -8 261 302 90 40 chr12 139698514 139698868 -4583621 - L2 LINE L2 -124 3189 2818 1645 230 60 14 chr12 139699183 139699618 -4582871 + MLT1C LTR MaLR 6 460 -7 1857 146 0 43 chr12 139701161 139701462 -4581027 + AluSx SINE Alu 1 288 -24 294 326 11 0 chr12 139701598 139701690 -4580799 - L2 LINE L2 -11 3261 3169 201 39 0 0 chr12 139702913 139702939 -4579550 + (GA)n Simple_repeat Simple_repeat 1 26 0 2408 89 0 0 chr12 139703104 139703397 -4579092 + AluSg SINE Alu 1 293 -17 1706 162 0 45 chr12 139704042 139704356 -4578133 + AluJb SINE Alu 1 300 -12 297 0 0 0 chr12 139704697 139704730 -4577759 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2568 217 35 12 chr12 139704789 139705389 -4577100 + L1MD2 LINE L1 5746 6359 0 1247 281 176 8 chr12 139705519 139706025 -4576464 + MLT1G1 LTR MaLR 2 592 -3 419 256 90 26 chr12 139706497 139706653 -4575836 - L2 LINE L2 0 3313 3148 234 302 16 0 chr12 139707418 139707481 -4575008 + GA-rich Low_complexity Low_complexity 3 66 0 1263 152 126 34 chr12 139708121 139708390 -4574099 + AluSg1 SINE Alu 1 294 -15 290 283 94 22 chr12 139708467 139708605 -4573884 - L1MC/D LINE L1 -2054 5754 5607 237 250 0 0 chr12 139709016 139709092 -4573397 + (TA)n Simple_repeat Simple_repeat 1 76 0 2460 138 71 43 chr12 139710773 139710905 -4571584 - MER4B LTR ERV1 0 779 652 2286 77 0 3 chr12 139710905 139711226 -4571263 - AluY SINE Alu 0 320 1 2460 138 71 43 chr12 139711226 139711688 -4570801 - MER4B LTR ERV1 -127 652 1 471 103 0 103 chr12 139711999 139712053 -4570436 - MADE1 DNA Mariner 0 80 37 2415 100 0 0 chr12 139712053 139712354 -4570135 + AluSg SINE Alu 4 304 -6 471 103 0 103 chr12 139712354 139712386 -4570103 - MADE1 DNA Mariner -43 37 3 1007 148 0 0 chr12 139713954 139714103 -4568386 + FRAM SINE Alu 5 153 -23 274 211 132 0 chr12 139714855 139714868 -4567621 - L1MA4A LINE L1 -27 6276 6264 2999 150 69 13 chr12 139714868 139715422 -4567067 - L1PB4 LINE L1 -24 6132 5548 183 80 0 0 chr12 139715989 139716014 -4566475 + (TC)n Simple_repeat Simple_repeat 2 26 0 523 165 16 28 chr12 139716572 139716754 -4565735 + (TG)n Simple_repeat Simple_repeat 1 180 0 234 121 35 17 chr12 139716832 139716890 -4565599 + (TG)n Simple_repeat Simple_repeat 2 60 0 420 181 48 12 chr12 139716952 139717292 -4565197 + (TG)n Simple_repeat Simple_repeat 1 352 0 329 143 39 50 chr12 139717356 139717538 -4564951 + (TG)n Simple_repeat Simple_repeat 1 180 0 246 262 107 0 chr12 139718099 139718127 -4564362 - L1M4 LINE L1 -3064 3082 3058 2348 96 0 13 chr12 139718127 139718440 -4564049 - AluY SINE Alu -2 309 1 246 262 107 0 chr12 139718440 139718514 -4563975 - L1M4 LINE L1 -3088 3058 2969 311 344 72 15 chr12 139719051 139719246 -4563243 - MIR SINE MIR 0 262 57 * 631 255 35 33 chr12 139719241 139719425 -4563064 - MIR SINE MIR -62 146 16 226 351 118 14 chr12 139721930 139722141 -4560348 + L2 LINE L2 3076 3308 -5 252 0 0 0 chr12 139722301 139722329 -4560160 + (TA)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr12 139723974 139723997 -4558492 + AT_rich Low_complexity Low_complexity 1 23 0 1587 129 47 0 chr12 139724242 139724306 -4558183 - AluSx SINE Alu 0 577 517 1030 117 11 6 chr12 139724306 139724485 -4558004 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1587 129 47 0 chr12 139724485 139724770 -4557719 - AluSx SINE Alu -60 517 38 481 289 63 0 chr12 139725183 139725325 -4557164 + MLT1J LTR MaLR 184 334 -177 2215 100 0 0 chr12 139725574 139725874 -4556615 - AluSg SINE Alu -10 300 1 2294 85 0 0 chr12 139726711 139727006 -4555483 + AluSc SINE Alu 1 295 -14 3108 186 25 83 chr12 139727157 139727713 -4554776 - L1MB7 LINE L1 -7 6177 5687 2312 75 0 3 chr12 139727713 139728020 -4554469 - AluY SINE Alu 0 311 6 3108 186 25 83 chr12 139728020 139728316 -4554173 - L1MB7 LINE L1 -497 5687 5375 23 0 0 0 chr12 139728493 139728516 -4553973 + AT_rich Low_complexity Low_complexity 1 23 0 5740 135 28 19 chr12 139728539 139730313 -4552176 - L1PA11 LINE L1 -79 6095 4306 768 244 0 6 chr12 139730315 139730483 -4552006 - L1MB7 LINE L1 -1254 4892 4726 3208 119 8 0 chr12 139730502 139730973 -4551516 - L1PB2 LINE L1 -3 6148 5674 306 73 0 0 chr12 139730973 139731014 -4551475 + (TC)n Simple_repeat Simple_repeat 2 42 0 1976 101 11 0 chr12 139731014 139731292 -4551197 - AluSp SINE Alu -32 281 1 1266 64 17 6 chr12 139731292 139731464 -4551025 - L1PB2 LINE L1 -462 5689 5516 * 2863 226 22 1 chr12 139731456 139732127 -4550362 - L1MB7 LINE L1 -1443 4703 4019 1865 142 4 0 chr12 139732586 139732867 -4549622 - AluSx SINE Alu -30 282 1 248 314 91 33 chr12 139733172 139733293 -4549196 - L2 LINE L2 0 3272 3145 216 0 0 0 chr12 139733483 139733507 -4548982 + (CA)n Simple_repeat Simple_repeat 2 25 0 523 283 69 39 chr12 139733731 139734235 -4548254 - L2 LINE L2 -1 3312 2790 1031 274 121 43 chr12 139734236 139734700 -4547789 + MLT1J LTR MaLR 1 500 -11 651 332 15 0 chr12 139734711 139734907 -4547582 - L2 LINE L2 -521 2793 2595 347 80 70 31 chr12 139734907 139734986 -4547503 - MLT2B2 LTR ERVL 0 515 359 2116 165 87 7 chr12 139735029 139735436 -4547053 - MSTB1 LTR MaLR 0 432 2 1273 207 82 31 chr12 139735453 139735691 -4546798 - MLT2D LTR ERVL -41 373 110 2743 102 8 3 chr12 139735691 139736064 -4546425 - THE1C LTR MaLR 0 375 1 1273 207 82 31 chr12 139736064 139736177 -4546312 - MLT2D LTR ERVL -304 110 4 363 327 131 5 chr12 139737221 139737420 -4545069 + MIR SINE MIR 10 233 -29 488 183 30 26 chr12 139737892 139738130 -4544359 + CT-rich Low_complexity Low_complexity 1 239 0 921 262 93 23 chr12 139739004 139739657 -4542832 + L2 LINE L2 2601 3311 -2 2361 82 7 0 chr12 139740979 139741284 -4541205 + AluSg SINE Alu 1 307 -3 297 0 0 0 chr12 139742058 139742091 -4540398 + (TG)n Simple_repeat Simple_repeat 2 34 0 461 298 63 24 chr12 139742496 139742701 -4539788 - MIR SINE MIR -1 261 49 2184 124 55 6 chr12 139742731 139743078 -4539411 - THE1B LTR MaLR 0 364 1 30 0 0 0 chr12 139743530 139743560 -4538929 + AT_rich Low_complexity Low_complexity 1 30 0 324 0 0 0 chr12 139743810 139743846 -4538643 + (CA)n Simple_repeat Simple_repeat 2 37 0 692 256 11 0 chr12 139743901 139744077 -4538412 + MER3 DNA MER1_type 6 183 -26 334 368 24 0 chr12 139744075 139744241 -4538248 + MLT1K LTR MaLR 46 215 -373 * 306 304 139 0 chr12 139744523 139744638 -4537851 - L2 LINE L2 0 3313 3183 1229 146 12 61 chr12 139746078 139746324 -4536165 - MER46A DNA MER2_type 0 236 3 310 340 67 67 chr12 139747052 139747118 -4535371 - L2 LINE L2 -28 3244 3179 2095 116 3 0 chr12 139747118 139747419 -4535070 + AluSg SINE Alu 1 302 -8 310 340 67 67 chr12 139747419 139747605 -4534884 - L2 LINE L2 -92 3180 2992 315 214 10 19 chr12 139747763 139747866 -4534623 + CT-rich Low_complexity Low_complexity 1 102 0 301 216 20 29 chr12 139748924 139749026 -4533463 + (TTA)n Simple_repeat Simple_repeat 1 101 0 337 289 0 39 chr12 139750212 139750316 -4532173 + MIR3 SINE MIR 86 185 -23 368 329 130 40 chr12 139750316 139750739 -4531750 - L2 LINE L2 0 3313 2853 1185 173 51 40 chr12 139751167 139751494 -4530995 + MER33 DNA MER1_type 1 321 -3 382 314 109 38 chr12 139751871 139752110 -4530379 + MIR SINE MIR 7 262 0 264 264 14 0 chr12 139752716 139752788 -4529701 - MIR SINE MIR -14 248 176 274 235 29 0 chr12 139752973 139753041 -4529448 - MIR SINE MIR -97 165 96 350 275 122 30 chr12 139753953 139754350 -4528139 - LTR33 LTR ERVL -67 454 1 467 244 25 16 chr12 139754440 139754612 -4527877 - MIR SINE MIR -24 238 9 953 334 59 26 chr12 139754745 139755086 -4527403 + MLT1K LTR MaLR 1 352 -236 207 114 0 0 chr12 139755100 139755135 -4527354 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1475 196 7 21 chr12 139755138 139755429 -4527060 - AluJo SINE Alu -25 287 1 687 228 62 28 chr12 139755444 139755655 -4526834 - L1MB7 LINE L1 -10 6174 5957 438 240 136 0 chr12 139755659 139755784 -4526705 + MLT1K LTR MaLR 334 475 -113 319 325 164 9 chr12 139756675 139756906 -4525583 - MLT1L LTR MaLR -135 480 214 242 250 28 14 chr12 139757006 139757078 -4525411 - MLT1L LTR MaLR -540 75 3 346 302 69 9 chr12 139757563 139757679 -4524810 + MIR SINE MIR 105 227 -35 269 231 176 28 chr12 139758136 139758244 -4524245 - L2 LINE L2 -35 3237 3114 1425 100 32 23 chr12 139758269 139758489 -4524000 + AluSq SINE Alu 82 303 -10 679 202 89 54 chr12 139758537 139758740 -4523749 - MER20 DNA MER1_type -6 213 4 1396 199 87 74 chr12 139758837 139759285 -4523204 - MLT1C LTR MaLR -10 457 4 247 349 81 17 chr12 139759355 139759590 -4522899 - L2 LINE L2 -337 2977 2728 2155 112 0 0 chr12 139760609 139760903 -4521586 - AluSg SINE Alu -16 294 1 347 246 86 113 chr12 139761011 139761267 -4521222 - MER112 DNA MER1_type -8 252 4 2432 49 0 7 chr12 139761660 139761966 -4520523 - AluY SINE Alu -7 304 1 2148 115 24 51 chr12 139762296 139762670 -4519819 + THE1B LTR MaLR 1 364 0 971 245 115 42 chr12 139762958 139763383 -4519106 - MLT1C LTR MaLR -6 461 6 365 256 12 0 chr12 139763534 139763616 -4518873 + MIR SINE MIR 59 141 -121 236 289 160 5 chr12 139763616 139763816 -4518673 + L2 LINE L2 2995 3313 0 485 211 11 0 chr12 139764083 139764178 -4518311 + MER82 DNA MER2_type 1 96 -557 704 198 0 8 chr12 139764178 139764304 -4518185 + FLAM_C SINE Alu 1 125 -18 2042 274 34 12 chr12 139764311 139764872 -4517617 + MER82 DNA MER2_type 81 653 0 549 158 79 23 chr12 139765931 139766085 -4516404 + MER3 DNA MER1_type 2 209 0 259 151 19 57 chr12 139766038 139766091 -4516398 - MER3 DNA MER1_type -117 92 42 * 490 222 0 11 chr12 139766418 139766598 -4515891 + (TG)n Simple_repeat Simple_repeat 1 178 0 234 309 0 5 chr12 139766610 139766826 -4515663 + (TG)n Simple_repeat Simple_repeat 1 214 0 180 0 0 0 chr12 139767607 139767627 -4514862 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 205 330 82 0 chr12 139768679 139768776 -4513713 + MIR SINE MIR 81 185 -77 472 306 8 8 chr12 139770161 139770295 -4512194 - MIR SINE MIR -21 241 108 239 226 75 0 chr12 139770322 139770375 -4512114 + L2 LINE L2 3256 3312 -1 1742 159 0 38 chr12 139770406 139770720 -4511769 + AluJo SINE Alu 7 308 -4 2020 116 7 0 chr12 139771086 139771378 -4511111 + AluSg SINE Alu 3 296 -14 433 262 108 30 chr12 139771745 139771960 -4510529 - Charlie8 DNA MER1_type -1002 1415 92 267 288 0 0 chr12 139771970 139772029 -4510460 + polypyrimidine Low_complexity Low_complexity 4 62 0 207 0 0 0 chr12 139772702 139772725 -4509764 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 325 289 60 75 chr12 139772726 139772992 -4509497 - L2 LINE L2 -17 3296 3035 390 270 190 0 chr12 139772994 139773157 -4509332 + L2 LINE L2 3110 3303 -10 1465 192 29 0 chr12 139773443 139773724 -4508765 - AluJo SINE Alu -22 290 2 1064 251 45 65 chr12 139773728 139774237 -4508252 - MLT1D LTR MaLR -2 503 5 381 310 49 15 chr12 139774237 139774440 -4508049 - L2 LINE L2 -571 2743 2534 410 241 215 38 chr12 139774584 139774742 -4507747 + MER5A DNA MER1_type 3 188 -1 668 266 48 89 chr12 139775095 139775343 -4507146 - MIR SINE MIR -5 257 20 535 186 31 10 chr12 139775365 139775462 -4507027 + MER58 DNA MER1_type 1 99 -242 274 164 148 0 chr12 139775474 139775535 -4506954 + MER58 DNA MER1_type 2318 2387 -33 480 48 0 0 chr12 139775592 139775655 -4506834 + (TC)n Simple_repeat Simple_repeat 1 63 0 1724 88 9 0 chr12 139776240 139776468 -4506021 + MER30 DNA MER1_type 1 230 0 514 261 39 85 chr12 139777200 139777507 -4504982 - MLT1J LTR MaLR -107 404 112 2016 135 85 15 chr12 139777528 139777868 -4504621 - THE1B LTR MaLR 0 364 1 220 234 21 35 chr12 139778668 139778813 -4503676 + (TTATA)n Simple_repeat Simple_repeat 5 147 0 2300 158 0 3 chr12 139778988 139779355 -4503134 - MER47A DNA MER2_type 0 366 1 1658 72 4 72 chr12 139779865 139780137 -4502352 + L1PA8 LINE L1 5924 6178 0 598 298 64 0 chr12 139780140 139780358 -4502131 - MIR SINE MIR -10 252 21 325 282 0 27 chr12 139781020 139781130 -4501359 + MER97c DNA MER1_type? 49 155 -935 252 204 0 0 chr12 139781717 139781766 -4500723 - MLT1K LTR MaLR -91 497 449 351 205 0 98 chr12 139781955 139782067 -4500422 + U13 snRNA snRNA 2 102 -2 605 294 16 3 chr12 139782124 139782313 -4500176 + MIR SINE MIR 13 202 -60 1044 229 68 57 chr12 139783246 139783582 -4498907 + MER58B DNA MER1_type 1 340 -1 247 259 30 107 chr12 139783937 139783997 -4498492 - MLT1L LTR MaLR -347 268 222 825 151 47 112 chr12 139783997 139784138 -4498351 - MER20 DNA MER1_type 0 219 97 1883 131 3 22 chr12 139784138 139784451 -4498038 - AluSx SINE Alu -2 310 4 825 151 47 112 chr12 139784451 139784541 -4497948 - MER20 DNA MER1_type -122 97 3 247 259 30 107 chr12 139784541 139784611 -4497878 - MLT1L LTR MaLR -393 222 148 550 222 141 56 chr12 139784611 139784809 -4497680 + MER58C DNA MER1_type 1 215 0 1288 277 120 23 chr12 139784837 139785444 -4497045 - MER20B DNA MER1_type -62 721 56 1862 206 96 35 chr12 139785444 139785778 -4496711 + MLT1D LTR MaLR 21 392 -113 1467 97 0 0 chr12 139785778 139785984 -4496505 - L1PA12 LINE L1 0 6168 5963 1862 206 96 35 chr12 139785984 139786106 -4496383 + MLT1D LTR MaLR 392 505 0 1138 172 30 10 chr12 139787465 139787663 -4494826 - MER20 DNA MER1_type 0 219 18 521 273 44 19 chr12 139788933 139789138 -4493351 - MER113 DNA MER1_type? -55 466 257 21 36 0 0 chr12 139789211 139789239 -4493250 + AT_rich Low_complexity Low_complexity 1 28 0 343 312 51 123 chr12 139789873 139790126 -4492363 - L2 LINE L2 -65 3207 2973 243 307 45 0 chr12 139790238 139790326 -4492163 - MIR SINE MIR -18 244 153 591 299 62 22 chr12 139790349 139790560 -4491929 + MIR SINE MIR 13 235 -27 2553 114 11 6 chr12 139790560 139790919 -4491570 + THE1B LTR MaLR 1 361 -3 591 299 62 22 chr12 139790919 139790931 -4491558 + MIR SINE MIR 235 245 -17 1428 202 46 33 chr12 139791036 139791401 -4491088 - MLT1H LTR MaLR -193 402 21 403 275 85 43 chr12 139792966 139793177 -4489312 - Charlie8 DNA MER1_type -2191 226 7 4555 242 98 52 chr12 139793675 139793921 -4488568 - L1MC4 LINE L1 -1 8041 7808 2183 73 0 11 chr12 139793921 139794207 -4488282 - AluSc SINE Alu -26 283 1 4555 242 98 52 chr12 139794207 139795932 -4486557 - L1MC4 LINE L1 -234 7808 6164 2305 138 25 0 chr12 139795932 139796287 -4486202 + THE1B LTR MaLR 1 364 0 4555 242 98 52 chr12 139796287 139796520 -4485969 - L1MC4 LINE L1 -1878 6164 5943 2433 68 0 3 chr12 139796520 139796828 -4485661 + AluY SINE Alu 1 307 -4 4555 242 98 52 chr12 139796828 139797602 -4484887 - L1MC4 LINE L1 -2099 5943 4900 793 164 0 41 chr12 139797615 139797761 -4484728 + FLAM_C SINE Alu 4 143 0 283 263 0 0 chr12 139797961 139798041 -4484448 + MER116 DNA Mariner 1 80 0 772 296 15 27 chr12 139800989 139801249 -4481240 + MIR SINE MIR 6 262 0 232 250 0 0 chr12 139801949 139802001 -4480488 + CT-rich Low_complexity Low_complexity 1 52 0 745 235 11 11 chr12 139802046 139802225 -4480264 - L1MD3 LINE L1 -5 7990 7812 25 0 0 0 chr12 139802400 139802425 -4480064 + AT_rich Low_complexity Low_complexity 1 25 0 399 220 140 10 chr12 139802531 139802631 -4479858 - L2 LINE L2 -34 3279 3167 372 285 71 90 chr12 139802946 139803269 -4479220 - MER113 DNA MER1_type? -71 450 134 898 274 222 28 chr12 139803283 139803418 -4479071 - L2 LINE L2 -4 3309 3201 1904 130 0 10 chr12 139803418 139803710 -4478779 + AluSq SINE Alu 1 289 -24 898 274 222 28 chr12 139803710 139804325 -4478164 - L2 LINE L2 -112 3201 2381 256 193 39 88 chr12 139804325 139804506 -4477983 - MER113 DNA MER1_type? -349 172 1 1345 170 0 0 chr12 139804508 139804726 -4477763 - L1PB3 LINE L1 0 6154 5937 519 111 0 0 chr12 139804726 139804798 -4477691 + L1P5 LINE L1 5718 5789 -365 29 0 0 0 chr12 139805277 139805306 -4477183 + AT_rich Low_complexity Low_complexity 1 29 0 405 287 0 28 chr12 139805364 139805472 -4477017 + L2 LINE L2 3206 3310 -3 967 203 18 37 chr12 139806183 139806400 -4476089 - MER20 DNA MER1_type -3 216 4 817 115 0 0 chr12 139807115 139807228 -4475261 + FLAM_A SINE Alu 20 132 -10 2200 68 0 45 chr12 139807269 139807578 -4474911 + AluY SINE Alu 11 305 -6 2144 199 28 21 chr12 139807751 139808219 -4474270 + L1MB7 LINE L1 5662 6132 -52 1143 237 60 70 chr12 139809044 139809457 -4473032 - MLT1C LTR MaLR 0 467 59 198 0 0 0 chr12 139810895 139810917 -4471572 + (TG)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr12 139810917 139810939 -4471550 + AT_rich Low_complexity Low_complexity 1 22 0 210 184 13 145 chr12 139811616 139811692 -4470797 - MIR SINE MIR -56 152 87 325 306 92 76 chr12 139811895 139812209 -4470280 - MLT1K LTR MaLR -269 319 1 488 307 151 9 chr12 139812211 139812423 -4470066 + MIR SINE MIR 5 246 -16 894 198 9 91 chr12 139812624 139812856 -4469633 + MER20 DNA MER1_type 7 219 0 958 271 34 37 chr12 139813934 139814031 -4468458 + MER93a LTR ERV1 76 172 -230 14431 137 20 29 chr12 139814031 139815052 -4467437 + Tigger1 DNA MER2_type 1 1030 -1388 1910 106 0 7 chr12 139815052 139815326 -4467163 - AluSx SINE Alu -8 304 33 14431 137 20 29 chr12 139815326 139816504 -4465985 + Tigger1 DNA MER2_type 1030 2178 -240 387 0 0 0 chr12 139816504 139816547 -4465942 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 14431 137 20 29 chr12 139816547 139816782 -4465707 + Tigger1 DNA MER2_type 2178 2414 -4 958 271 34 37 chr12 139816782 139817012 -4465477 + MER93a LTR ERV1 172 402 0 453 211 59 125 chr12 139817697 139817802 -4464687 - MER5A DNA MER1_type -1 188 78 2027 94 45 0 chr12 139817802 139818089 -4464400 - AluSq SINE Alu -13 300 1 453 211 59 125 chr12 139818089 139818102 -4464387 - MER5A DNA MER1_type -111 78 66 1798 125 3 62 chr12 139818102 139818423 -4464066 - AluSx SINE Alu -10 302 1 453 211 59 125 chr12 139818423 139818455 -4464034 - MER5A DNA MER1_type -123 66 47 783 132 16 0 chr12 139818455 139818576 -4463913 + MLT1C LTR MaLR 1 123 -344 785 203 0 0 chr12 139818640 139818778 -4463711 + MLT1C LTR MaLR 330 467 0 267 196 0 0 chr12 139818778 139818829 -4463660 - MER5A DNA MER1_type -138 51 1 9709 43 6 1 chr12 139818833 139820809 -4461680 + L1PA6 LINE L1 4172 6153 -1 433 247 91 88 chr12 139820875 139821195 -4461294 - MLT1L LTR MaLR -127 488 168 2450 137 35 24 chr12 139821663 139822088 -4460401 + MSTB1 LTR MaLR 1 430 -2 1154 178 37 12 chr12 139822096 139822337 -4460152 - L1MB5 LINE L1 -1 6173 5927 499 298 67 35 chr12 139823793 139824048 -4458441 - LTR67 LTR ERVL -4 553 291 499 277 0 0 chr12 139824097 139824216 -4458273 - LTR67 LTR ERVL -356 201 83 1942 119 27 0 chr12 139824268 139824561 -4457928 + AluSq SINE Alu 1 301 -12 455 310 58 35 chr12 139824600 139824826 -4457663 + MER102b DNA MER1_type 91 321 -20 1599 102 12 35 chr12 139825248 139825502 -4456987 + AluSx SINE Alu 35 282 -30 34 0 0 0 chr12 139825502 139825536 -4456953 + AT_rich Low_complexity Low_complexity 1 34 0 204 243 56 131 chr12 139825568 139825675 -4456814 + MIR3 SINE MIR 81 179 -29 362 262 63 63 chr12 139825878 139826004 -4456485 - MER5B DNA MER1_type -3 175 50 476 299 83 40 chr12 139826056 139826209 -4456280 + L1MC4 LINE L1 7544 7689 -353 1085 169 10 20 chr12 139826209 139826410 -4456079 - L1MB5 LINE L1 0 6174 5976 476 299 83 40 chr12 139826410 139826607 -4455882 + L1MC4 LINE L1 7689 7909 -133 207 200 0 0 chr12 139826607 139826642 -4455847 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 201 39 0 0 chr12 139826643 139826669 -4455820 + (GA)n Simple_repeat Simple_repeat 1 26 0 1521 100 25 8 chr12 139826689 139826928 -4455561 + L1PB2 LINE L1 5907 6149 -2 363 344 15 30 chr12 139827047 139827178 -4455311 + MER5B DNA MER1_type 48 176 -2 312 280 18 89 chr12 139827204 139827372 -4455117 + L2 LINE L2 2858 3013 -300 1565 176 14 3 chr12 139827432 139827721 -4454768 - AluJo SINE Alu -20 292 1 594 229 14 21 chr12 139830984 139831124 -4451365 + MER63 DNA MER1_type 1 765 -297 2537 10 0 3 chr12 139831209 139831499 -4450990 - AluYb8 SINE Alu 0 318 30 320 321 12 0 chr12 139831651 139831735 -4450754 - MIR SINE MIR -141 121 37 1619 257 77 13 chr12 139831750 139832220 -4450269 - MLT1H LTR MaLR -10 539 40 289 256 70 116 chr12 139832379 139832401 -4450088 + MER102b DNA MER1_type 103 124 -1304 2151 53 0 0 chr12 139832401 139832667 -4449822 + AluY SINE Alu 44 309 -2 289 256 70 116 chr12 139832667 139832886 -4449603 + MER102b DNA MER1_type 124 333 -8 857 236 15 5 chr12 139833576 139833779 -4448710 + MER3 DNA MER1_type 1 205 -4 383 294 57 21 chr12 139835282 139835476 -4447013 - L2 LINE L2 0 3313 3113 26 0 0 0 chr12 139835560 139835586 -4446903 + AT_rich Low_complexity Low_complexity 1 26 0 1526 138 7 36 chr12 139835605 139835881 -4446608 - AluJb SINE Alu -25 287 20 208 277 0 96 chr12 139835892 139835975 -4446514 + T-rich Low_complexity Low_complexity 1 75 0 281 316 0 37 chr12 139836039 139836175 -4446314 + T-rich Low_complexity Low_complexity 1 131 0 1066 128 151 89 chr12 139836382 139836640 -4445849 + AluSx SINE Alu 30 303 -9 253 279 51 30 chr12 139836728 139836925 -4445564 - MER113 DNA MER1_type? -278 243 43 424 299 94 13 chr12 139837077 139837311 -4445178 - MLT1H1 LTR MaLR -3 552 300 376 266 79 7 chr12 139837434 139837573 -4444916 - MLT1H1 LTR MaLR -444 151 3 264 261 29 0 chr12 139838110 139838179 -4444310 - MIR SINE MIR -3 259 189 250 261 57 115 chr12 139838213 139838370 -4444119 + MLT1L LTR MaLR 4 151 -464 460 275 129 30 chr12 139838378 139838611 -4443878 - MLT1F LTR MaLR -12 530 275 413 320 47 0 chr12 139839924 139840074 -4442415 + MER117 DNA MER1_type 27 183 -14 2027 225 70 49 chr12 139840230 139840287 -4442202 - L1ME2 LINE L1 -17 6147 6093 1754 175 0 9 chr12 139840287 139840602 -4441887 - AluJb SINE Alu 0 312 1 2027 225 70 49 chr12 139840602 139841198 -4441291 - L1ME2 LINE L1 -71 6093 5480 2166 52 0 11 chr12 139841217 139841487 -4441002 + AluY SINE Alu 32 298 -13 344 228 114 26 chr12 139841514 139841628 -4440861 - MIR SINE MIR -61 201 78 302 161 46 58 chr12 139842064 139842238 -4440251 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 697 261 60 15 chr12 139842528 139842727 -4439762 + MER63A DNA MER1_type 3 210 0 429 217 114 72 chr12 139842759 139842925 -4439564 - MLT1J LTR MaLR -330 181 9 182 262 213 0 chr12 139843096 139843157 -4439332 - MIR SINE MIR -116 146 73 294 309 64 84 chr12 139843344 139843507 -4438982 - L2 LINE L2 -804 2510 2354 2193 96 17 0 chr12 139843507 139843808 -4438681 + AluSg SINE Alu 1 306 -4 294 309 64 84 chr12 139843808 139843955 -4438534 - L2 LINE L2 -960 2354 2206 1178 251 95 26 chr12 139844046 139844392 -4438097 - MLT1K LTR MaLR -23 565 196 254 245 0 0 chr12 139844521 139844574 -4437915 - MLT1K LTR MaLR -529 59 7 447 331 77 28 chr12 139845469 139845650 -4436839 + MER91A DNA MER1_type 1 190 -6 1613 126 4 15 chr12 139845987 139846270 -4436219 - AluSx SINE Alu 0 312 36 386 284 142 17 chr12 139846729 139846968 -4435521 - MLT1J LTR MaLR 0 511 243 2215 99 0 0 chr12 139847211 139847515 -4434974 - AluSq SINE Alu -9 304 1 507 272 147 27 chr12 139847690 139847914 -4434575 + MLT1J2 LTR MaLR 200 450 0 1444 191 0 53 chr12 139848367 139848687 -4433802 + AluJo SINE Alu 7 309 -3 1982 129 0 7 chr12 139849093 139849396 -4433093 - AluSx SINE Alu -11 301 1 500 240 34 29 chr12 139849813 139849988 -4432501 + MER96B DNA MER1_type? 2 177 -240 1665 121 55 31 chr12 139850424 139850713 -4431776 - AluJb SINE Alu -16 296 1 277 299 333 0 chr12 139851732 139851849 -4430640 - L2 LINE L2 0 3272 3117 2303 83 0 3 chr12 139852213 139852514 -4429975 - AluSp SINE Alu -13 300 1 207 0 0 0 chr12 139852525 139852548 -4429941 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr12 139852757 139852789 -4429700 + AT_rich Low_complexity Low_complexity 1 32 0 1491 136 128 4 chr12 139853226 139853491 -4428998 - AluJo SINE Alu -14 298 1 525 267 0 0 chr12 139853536 139853712 -4428777 + (TATG)n Simple_repeat Simple_repeat 3 178 0 191 323 18 0 chr12 139853673 139853840 -4428649 + (CATATA)n Simple_repeat Simple_repeat 2 171 0 * 655 233 121 34 chr12 139854622 139854828 -4427661 - MER58A DNA MER1_type 0 224 1 960 197 22 6 chr12 139854898 139855081 -4427408 - MER20 DNA MER1_type 0 219 34 284 114 38 127 chr12 139855089 139855168 -4427321 - MER20 DNA MER1_type -142 77 6 933 285 20 4 chr12 139855499 139855748 -4426741 + MIR SINE MIR 4 256 -6 283 278 102 0 chr12 139856274 139856382 -4426107 + MER103 DNA DNA 3 121 -45 698 249 120 9 chr12 139856787 139857012 -4425477 - MLT1C LTR MaLR 0 467 218 534 305 63 17 chr12 139857621 139857860 -4424629 - MLT1C LTR MaLR -255 250 1 842 196 21 62 chr12 139857982 139858176 -4424313 - MER5A DNA MER1_type -3 186 1 1046 199 24 81 chr12 139859169 139859465 -4423024 + L1MB7 LINE L1 5890 6168 -16 318 300 125 12 chr12 139859652 139859812 -4422677 - MIR SINE MIR -41 221 44 318 327 103 36 chr12 139860555 139860720 -4421769 + MER5B DNA MER1_type 2 177 -1 656 245 156 62 chr12 139860940 139861356 -4421133 - MLT1H LTR MaLR -2 547 93 2045 123 0 7 chr12 139861449 139861773 -4420716 - AluSx SINE Alu 0 312 1 22 0 0 0 chr12 139862178 139862200 -4420289 + AT_rich Low_complexity Low_complexity 1 22 0 731 264 13 64 chr12 139862908 139862931 -4419558 + MIR SINE MIR 14 37 -225 2427 90 33 0 chr12 139862931 139863266 -4419223 + L1PA13 LINE L1 5818 6163 0 1093 271 46 18 chr12 139863271 139863600 -4418889 + MER58B DNA MER1_type 2 339 -2 731 264 13 64 chr12 139863600 139863805 -4418684 + MIR SINE MIR 41 236 -26 1503 187 0 7 chr12 139863869 139864142 -4418347 + AluJo SINE Alu 3 273 -39 267 250 26 53 chr12 139864875 139864951 -4417538 + L2 LINE L2 3198 3271 -1 264 279 164 50 chr12 139865117 139865318 -4417171 - MIR SINE MIR -33 229 6 213 366 15 15 chr12 139865413 139865544 -4416945 - MIR SINE MIR -101 161 31 2859 174 4 109 chr12 139865886 139866629 -4415860 - L1 LINE L1 -2095 4051 3387 1668 143 0 78 chr12 139866853 139867160 -4415329 + AluJo SINE Alu 1 283 -29 5544 73 7 7 chr12 139867301 139868058 -4414431 + L1PA5 LINE L1 5398 6154 0 579 307 56 17 chr12 139868809 139869040 -4413449 + MIR SINE MIR 15 254 -8 437 290 0 0 chr12 139870224 139870331 -4412158 - L2 LINE L2 -546 2768 2662 35 74 0 11 chr12 139871182 139871240 -4411249 + AT_rich Low_complexity Low_complexity 1 59 -35 2109 117 0 0 chr12 139871240 139871530 -4410959 - AluSx SINE Alu -22 290 1 35 74 0 11 chr12 139871530 139871566 -4410923 + AT_rich Low_complexity Low_complexity 59 94 0 339 197 40 13 chr12 139871640 139871716 -4410773 + MER3 DNA MER1_type 5 82 -127 602 231 0 8 chr12 139871791 139871908 -4410581 - MER63 DNA MER1_type -94 742 1 504 242 40 0 chr12 139871912 139872036 -4410453 + MER3 DNA MER1_type 81 209 0 243 196 22 0 chr12 139871997 139872043 -4410446 - MER3 DNA MER1_type -122 87 41 * 298 265 154 68 chr12 139872058 139872220 -4410269 + L1ME3 LINE L1 5903 6078 -84 264 167 0 0 chr12 139872257 139872305 -4410184 + (TA)n Simple_repeat Simple_repeat 1 48 0 234 174 0 0 chr12 139872396 139872442 -4410047 + (CA)n Simple_repeat Simple_repeat 1 46 0 405 0 0 0 chr12 139872987 139873032 -4409457 + (TG)n Simple_repeat Simple_repeat 2 46 0 1145 138 18 49 chr12 139874191 139874416 -4408073 - MER20 DNA MER1_type 0 219 2 2155 107 0 0 chr12 139874432 139874732 -4407757 + AluSx SINE Alu 1 300 -12 282 95 0 0 chr12 139874896 139874938 -4407551 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 1871 141 0 3 chr12 139874945 139875228 -4407261 - AluJo SINE Alu -24 288 7 205 260 0 20 chr12 139875296 139875346 -4407143 - L3 LINE CR1 -296 1281 1233 954 244 69 25 chr12 139875753 139876073 -4406416 + MER63B DNA MER1_type 6 339 -97 298 276 0 10 chr12 139876120 139876218 -4406271 + MER63B DNA MER1_type 314 410 -25 282 287 274 0 chr12 139876265 139876429 -4406060 - MIR SINE MIR -6 256 48 180 111 0 0 chr12 139876579 139876606 -4405883 + (TCCCC)n Simple_repeat Simple_repeat 2 28 0 42741 52 6 0 chr12 139877177 139882442 -4400047 - L1P LINE L1 -852 5294 1 4307 208 60 30 chr12 139882680 139882860 -4399629 + L1MB7 LINE L1 4070 4243 -1941 1953 142 17 0 chr12 139882860 139883155 -4399334 + AluSx SINE Alu 1 300 -12 4307 208 60 30 chr12 139883155 139883731 -4398758 + L1MB7 LINE L1 4243 4800 -1384 4656 143 33 6 chr12 139883731 139884542 -4397947 - L1MA4 LINE L1 -4 6296 5464 4307 208 60 30 chr12 139884542 139885573 -4396916 + L1MB7 LINE L1 4800 5918 -266 356 246 63 16 chr12 139885574 139885700 -4396789 + MLT2E LTR ERVL 497 628 0 198 283 0 0 chr12 139886370 139886423 -4396066 - MER5A DNA MER1_type -63 126 74 307 214 39 39 chr12 139886447 139886550 -4395939 + L1MC5 LINE L1 7647 7749 -212 223 184 0 0 chr12 139886558 139886596 -4395893 + MER5B DNA MER1_type 131 168 -10 216 352 80 0 chr12 139886649 139886737 -4395752 - L2 LINE L2 -60 3212 3118 223 286 83 0 chr12 139887923 139888007 -4394482 + MIR3 SINE MIR 111 201 -7 690 259 92 0 chr12 139888073 139888300 -4394189 - MIR SINE MIR -3 259 5 445 248 0 31 chr12 139888309 139888438 -4394051 - MLT1G LTR MaLR -24 518 394 205 243 0 0 chr12 139888492 139888529 -4393960 + polypyrimidine Low_complexity Low_complexity 1 37 0 861 230 7 82 chr12 139888538 139888907 -4393582 - MLT1G LTR MaLR -286 304 1 1477 199 46 51 chr12 139888912 139889276 -4393213 - MLT1B LTR MaLR 0 390 27 270 0 0 0 chr12 139889276 139889306 -4393183 + (TGGGGG)n Simple_repeat Simple_repeat 5 34 0 1477 199 46 51 chr12 139889306 139889333 -4393156 - MLT1B LTR MaLR -363 27 1 340 255 10 29 chr12 139889549 139889651 -4392838 - LTR67 LTR ERVL -1 556 457 250 319 75 21 chr12 139890034 139890128 -4392361 + MIR SINE MIR 164 262 0 558 286 91 72 chr12 139891076 139891647 -4390842 + MLT1K LTR MaLR 3 584 -4 342 67 0 0 chr12 139891843 139891888 -4390601 + (T)n Simple_repeat Simple_repeat 1 45 0 1902 131 92 9 chr12 139892527 139892855 -4389634 - THE1A LTR MaLR 0 355 1 351 113 0 0 chr12 139893303 139893356 -4389133 + (CATGT)n Simple_repeat Simple_repeat 5 57 0 281 356 0 0 chr12 139893408 139893523 -4388966 + L2 LINE L2 3158 3272 0 1196 177 94 131 chr12 139893603 139894083 -4388406 - MER4C LTR ERV1 -3 462 1 193 323 32 0 chr12 139895708 139895770 -4386719 - L2 LINE L2 -2 3311 3248 816 268 59 88 chr12 139895852 139896374 -4386115 - MER77 LTR ERV1 -6 599 93 1025 275 63 82 chr12 139896612 139897291 -4385198 - L1MC4a LINE L1 -1675 6133 5468 468 299 30 0 chr12 139898773 139898907 -4383582 - MIR SINE MIR -43 219 82 416 211 203 8 chr12 139899230 139899358 -4383131 - L2 LINE L2 -3 3310 3158 438 277 96 81 chr12 139899759 139900009 -4382480 + MLT1L LTR MaLR 266 492 -19 2280 64 3 7 chr12 139900018 139900314 -4382175 + AluY SINE Alu 1 295 -16 673 281 96 30 chr12 139900627 139901036 -4381453 + L1ME2 LINE L1 5657 6092 -74 1633 178 10 17 chr12 139901095 139901387 -4381102 + AluJo SINE Alu 1 290 -22 1770 130 3 40 chr12 139901406 139901753 -4380736 + AluSx SINE Alu 2 312 0 962 158 12 0 chr12 139901753 139901918 -4380571 + AluSg/x SINE Alu 134 300 -12 291 282 73 0 chr12 139902040 139902150 -4380339 + L1MC4 LINE L1 7923 8040 -2 434 88 15 0 chr12 139903175 139903243 -4379246 + (TG)n Simple_repeat Simple_repeat 1 69 0 589 252 40 45 chr12 139903281 139903503 -4378986 + MIR SINE MIR 41 261 -1 335 239 37 52 chr12 139903563 139903697 -4378792 - L1MC4a LINE L1 -1884 5924 5793 536 248 26 0 chr12 139903733 139903850 -4378639 + MER94 DNA DNA 2 121 -13 624 330 69 20 chr12 139903910 139904258 -4378231 - MLT1L LTR MaLR -218 397 33 511 293 207 23 chr12 139904726 139904992 -4377497 + MLT1J LTR MaLR 1 315 -196 728 218 25 18 chr12 139905004 139905150 -4377339 - MER20 DNA MER1_type 0 219 78 235 233 137 0 chr12 139905150 139905223 -4377266 - LTR19A LTR ERV1 0 486 404 385 227 0 0 chr12 139905403 139905478 -4377011 - MER20 DNA MER1_type -144 75 1 270 176 0 0 chr12 139905606 139905657 -4376832 + (TG)n Simple_repeat Simple_repeat 2 52 0 862 50 0 58 chr12 139905672 139905793 -4376696 - L1PA6 LINE L1 -64 6090 5977 21 0 0 0 chr12 139906115 139906136 -4376353 + AT_rich Low_complexity Low_complexity 1 21 0 244 266 31 0 chr12 139907114 139907178 -4375311 - MLT1K LTR MaLR -1 587 522 3158 176 2 7 chr12 139907192 139907750 -4374739 + L1MB3 LINE L1 5618 6172 -11 330 277 44 83 chr12 139907760 139908028 -4374461 - MLT1K LTR MaLR -62 526 234 1686 153 0 41 chr12 139908028 139908348 -4374141 + AluJo SINE Alu 1 307 -5 330 277 44 83 chr12 139908348 139908406 -4374083 - MLT1K LTR MaLR -354 234 175 355 296 54 36 chr12 139909361 139909584 -4372905 + MLT1L LTR MaLR 24 250 -365 390 42 0 0 chr12 139909629 139909677 -4372812 + (TC)n Simple_repeat Simple_repeat 1 48 0 1038 266 130 31 chr12 139910423 139910509 -4371980 - L2 LINE L2 -11 3302 3226 1796 184 25 8 chr12 139910509 139910868 -4371621 - MLT1A1 LTR MaLR 0 365 1 1038 266 130 31 chr12 139910868 139911235 -4371254 - L2 LINE L2 -87 3226 2804 186 349 45 0 chr12 139911263 139911329 -4371160 - MIR SINE MIR -178 84 16 300 200 0 0 chr12 139911975 139912045 -4370444 + (TG)n Simple_repeat Simple_repeat 2 71 0 493 266 19 93 chr12 139912134 139912348 -4370141 + MIR SINE MIR 30 227 -35 923 189 31 66 chr12 139912867 139913094 -4369395 - MER20 DNA MER1_type 0 219 1 53 17 0 0 chr12 139913428 139913488 -4369001 + AT_rich Low_complexity Low_complexity 1 60 0 390 259 89 76 chr12 139913592 139913812 -4368677 + L1MC5 LINE L1 7307 7536 -425 2049 112 26 7 chr12 139913812 139914116 -4368373 + AluSx SINE Alu 1 310 -2 390 259 89 76 chr12 139914116 139914278 -4368211 + L1MC5 LINE L1 7536 7694 -267 394 291 104 22 chr12 139914284 139914418 -4368071 - LTR33 LTR ERVL -343 178 34 1552 187 49 49 chr12 139914587 139914750 -4367739 + MER63B DNA MER1_type 1 163 -899 2099 112 0 3 chr12 139914750 139915053 -4367436 - AluSg SINE Alu -8 302 1 1552 187 49 49 chr12 139915053 139915280 -4367209 + MER63B DNA MER1_type 162 391 -45 326 330 0 0 chr12 139915840 139915940 -4366549 + (CA)n Simple_repeat Simple_repeat 1 100 0 2277 87 0 6 chr12 139916667 139916978 -4365511 + AluSx SINE Alu 1 309 -3 1728 168 48 68 chr12 139917700 139918098 -4364391 - MLT1B LTR MaLR 0 390 1 407 141 13 0 chr12 139918213 139918291 -4364198 + (CA)n Simple_repeat Simple_repeat 1 79 0 6929 56 16 13 chr12 139919534 139919895 -4362594 + L1PA6 LINE L1 5127 5486 -668 2068 100 14 0 chr12 139919895 139920186 -4362303 + AluY SINE Alu 1 295 -16 6929 56 16 13 chr12 139920186 139920847 -4361642 + L1PA6 LINE L1 5486 6153 -1 246 81 0 0 chr12 139921055 139921092 -4361397 + (TG)n Simple_repeat Simple_repeat 2 38 0 4294 157 23 3 chr12 139921123 139921829 -4360660 - MER72 LTR ERV1 0 722 3 871 235 96 75 chr12 139921883 139922249 -4360240 + L1MD2 LINE L1 5922 6300 -59 1072 165 61 152 chr12 139922249 139922439 -4360050 - AluJo SINE Alu -4 298 149 2006 106 0 11 chr12 139922439 139922722 -4359767 - AluSq SINE Alu -26 287 8 1072 165 61 152 chr12 139922722 139922859 -4359630 - AluJo SINE Alu -153 149 1 871 235 96 75 chr12 139922859 139922921 -4359568 + L1MD2 LINE L1 6300 6359 0 2823 249 131 35 chr12 139922931 139923640 -4358849 - HAL1 LINE L1 -84 2423 1784 2074 106 0 7 chr12 139923640 139923933 -4358556 + AluY SINE Alu 1 291 -20 2823 249 131 35 chr12 139923933 139924556 -4357933 - HAL1 LINE L1 -723 1784 962 2101 120 0 0 chr12 139924557 139924857 -4357632 - AluSc SINE Alu -9 300 1 926 249 43 31 chr12 139924962 139925219 -4357270 - MER21B LTR ERV1 0 863 604 450 185 0 0 chr12 139925220 139925350 -4357139 + CT-rich Low_complexity Low_complexity 2 131 0 2837 187 70 25 chr12 139925350 139925921 -4356568 - MER21B LTR ERV1 -265 598 2 493 318 88 4 chr12 139925923 139926162 -4356327 - HAL1 LINE L1 -1618 889 631 538 269 87 44 chr12 139926328 139926603 -4355886 - HAL1 LINE L1 -2127 380 94 23 0 0 0 chr12 139926603 139926626 -4355863 + AT_rich Low_complexity Low_complexity 1 23 0 1652 151 0 0 chr12 139926627 139926885 -4355604 - AluSx SINE Alu -28 284 27 2029 122 0 3 chr12 139926885 139927188 -4355301 + AluSc SINE Alu 1 302 -7 249 94 0 0 chr12 139927189 139927221 -4355268 - AluSx SINE Alu -266 37 6 245 302 23 12 chr12 139927244 139927330 -4355159 - HAL1 LINE L1 -2404 103 17 675 251 62 43 chr12 139927527 139927738 -4354751 - MIR SINE MIR -1 261 47 285 198 31 83 chr12 139927909 139928005 -4354484 - MER20 DNA MER1_type -122 97 7 667 271 72 39 chr12 139928941 139929329 -4353160 - L1ME4a LINE L1 -1 6120 5720 5118 124 24 5 chr12 139929331 139930115 -4352374 - L1PA16 LINE L1 -9 6157 5359 277 291 47 0 chr12 139930120 139930206 -4352283 - L1ME4a LINE L1 -395 5726 5637 926 156 19 0 chr12 139931100 139931254 -4351235 - MLT1D LTR MaLR -317 188 32 1539 65 0 42 chr12 139931733 139931948 -4350541 + AluY SINE Alu 100 305 -6 727 182 84 0 chr12 139932867 139933010 -4349479 - MLT1D LTR MaLR -325 180 26 1517 205 67 15 chr12 139933062 139933389 -4349100 - MER2 DNA MER2_type 0 344 1 199 304 0 18 chr12 139933875 139933931 -4348558 - L2 LINE L2 -1 3271 3217 300 305 91 46 chr12 139934101 139934298 -4348191 - MIR SINE MIR -21 241 36 1392 213 30 60 chr12 139934431 139934667 -4347822 - MLT1B LTR MaLR 0 390 169 1824 144 7 13 chr12 139934667 139934965 -4347524 - AluJb SINE Alu -16 296 1 1392 213 30 60 chr12 139934965 139935128 -4347361 - MLT1B LTR MaLR -221 169 3 532 200 40 118 chr12 139935258 139935553 -4346936 + LTR16A1 LTR ERVL 203 456 -1 377 197 73 124 chr12 139936879 139936987 -4345502 + MER113 DNA MER1_type? 127 239 -282 1856 112 36 33 chr12 139936987 139937291 -4345198 + AluSx SINE Alu 1 305 -7 377 197 73 124 chr12 139937291 139937412 -4345077 + MER113 DNA MER1_type? 239 344 -177 1495 108 50 14 chr12 139937412 139937634 -4344855 + MER30 DNA MER1_type 1 230 0 377 197 73 124 chr12 139937634 139937662 -4344827 + MER113 DNA MER1_type? 344 372 -149 407 270 181 23 chr12 139938657 139938872 -4343617 - Charlie8 DNA MER1_type -2134 283 35 1716 181 3 10 chr12 139940073 139940377 -4342112 - AluJb SINE Alu -10 302 1 823 226 162 36 chr12 139940894 139941354 -4341135 + MLT1G1 LTR MaLR 34 542 -13 417 318 55 55 chr12 139942269 139942470 -4340019 + MIR SINE MIR 2 202 -60 2649 113 3 0 chr12 139942612 139942975 -4339514 + THE1B LTR MaLR 1 364 0 672 71 0 0 chr12 139943459 139943558 -4338931 + (CA)n Simple_repeat Simple_repeat 2 100 0 578 294 55 44 chr12 139943587 139943930 -4338559 - L1MC4a LINE L1 -1926 5882 5536 591 286 131 47 chr12 139944233 139944328 -4338161 + L2 LINE L2 2627 2713 -600 1815 142 3 0 chr12 139944328 139944610 -4337879 + AluJo SINE Alu 1 283 -29 591 286 131 47 chr12 139944610 139945128 -4337361 + L2 LINE L2 2713 3313 0 185 227 125 34 chr12 139945123 139945211 -4337278 - MIR SINE MIR -58 204 109 * 690 260 123 43 chr12 139947119 139947557 -4334932 - MLT1J LTR MaLR -9 502 30 431 269 123 15 chr12 139948030 139948160 -4334329 + MIR SINE MIR 109 252 -10 1330 233 29 37 chr12 139948166 139948221 -4334268 - MLT1A2 LTR MaLR 0 374 320 1069 31 78 0 chr12 139948221 139948350 -4334139 + MER85 DNA T2_type 1 139 0 1330 233 29 37 chr12 139948350 139948671 -4333818 - MLT1A2 LTR MaLR -54 320 1 402 264 138 6 chr12 139949008 139949167 -4333322 + MIR SINE MIR 62 241 -21 304 327 35 9 chr12 139949198 139949311 -4333178 + MLT1E LTR MaLR 1 116 -477 22 56 0 0 chr12 139949347 139949383 -4333106 + AT_rich Low_complexity Low_complexity 1 36 0 1283 243 23 13 chr12 139949509 139949809 -4332680 + MLT1E LTR MaLR 285 587 -6 277 289 96 64 chr12 139949932 139950119 -4332370 - MIR SINE MIR -50 212 20 276 132 0 0 chr12 139950236 139950265 -4332224 + (A)n Simple_repeat Simple_repeat 1 32 -21 1905 146 0 0 chr12 139950265 139950545 -4331944 - AluSx SINE Alu -27 285 6 276 132 0 0 chr12 139950545 139950568 -4331921 + (A)n Simple_repeat Simple_repeat 31 53 0 547 290 55 16 chr12 139951095 139951278 -4331211 + MIR SINE MIR 4 193 -69 792 179 142 23 chr12 139951698 139951777 -4330712 + L1MA9 LINE L1 6068 6136 -176 432 67 0 0 chr12 139951777 139951837 -4330652 + (CA)n Simple_repeat Simple_repeat 1 60 0 792 179 142 23 chr12 139951837 139951975 -4330514 + L1MA9 LINE L1 6136 6311 -1 902 245 91 8 chr12 139952813 139953054 -4329435 - MIR SINE MIR 0 262 2 328 289 281 20 chr12 139953269 139953667 -4328822 - L2 LINE L2 -5 3308 2807 206 236 36 0 chr12 139953878 139953933 -4328556 + GA-rich Low_complexity Low_complexity 5 61 0 455 242 39 55 chr12 139954933 139955115 -4327374 - MLT1J LTR MaLR -94 417 239 363 278 53 47 chr12 139955208 139955377 -4327112 - MLT1J LTR MaLR -331 180 11 713 302 24 24 chr12 139955418 139955706 -4326783 + MLT1L LTR MaLR 328 615 0 1621 142 25 7 chr12 139955740 139956021 -4326468 - L1MB3 LINE L1 -3 6180 5895 438 311 130 30 chr12 139956109 139956408 -4326081 - MLT1K LTR MaLR -114 474 146 261 61 0 0 chr12 139956424 139956457 -4326032 - MLT1K LTR MaLR -410 178 146 329 135 225 22 chr12 139956516 139956605 -4325884 - MLT1K LTR MaLR -336 252 146 290 198 161 40 chr12 139956660 139956812 -4325677 - MLT1K LTR MaLR -336 252 146 298 218 119 59 chr12 139956923 139957024 -4325465 - MLT1K LTR MaLR -336 252 146 384 243 199 15 chr12 139957080 139957216 -4325273 - MLT1K LTR MaLR -336 252 92 6406 33 0 0 chr12 139957223 139957957 -4324532 + L1PA5 LINE L1 5410 6143 -11 28 29 0 0 chr12 139957957 139957992 -4324497 + AT_rich Low_complexity Low_complexity 1 35 0 1347 112 49 0 chr12 139958003 139958227 -4324262 + L1MB3 LINE L1 5941 6175 -8 244 315 54 0 chr12 139958312 139958404 -4324085 - MLT1K LTR MaLR -490 98 2 565 294 38 6 chr12 139958666 139958826 -4323663 - MIR SINE MIR -1 261 97 326 207 17 121 chr12 139959167 139959283 -4323206 + MER102b DNA MER1_type 237 340 -1 981 221 73 55 chr12 139959490 139959550 -4322939 - LTR37A LTR ERV1 0 426 369 1936 132 7 3 chr12 139959550 139959853 -4322636 + AluSc SINE Alu 1 304 -5 981 221 73 55 chr12 139959853 139960190 -4322299 - LTR37A LTR ERV1 -57 369 22 1115 188 8 16 chr12 139960354 139960599 -4321890 + AluSx SINE Alu 34 276 -36 497 294 156 9 chr12 139960914 139961125 -4321364 - MIR SINE MIR 0 262 21 202 217 0 0 chr12 139961126 139961172 -4321317 + (TTG)n Simple_repeat Simple_repeat 1 46 0 2287 166 3 0 chr12 139961269 139961660 -4320829 - L1MB7 LINE L1 -16 6168 5777 645 202 20 56 chr12 139962280 139962478 -4320011 + MER113 DNA MER1_type? 33 223 -298 1937 128 0 0 chr12 139962937 139963249 -4319240 - AluSx SINE Alu 0 312 1 452 200 9 27 chr12 139963846 139963956 -4318533 - MER103 DNA DNA -10 156 49 407 264 111 21 chr12 139964415 139964559 -4317930 + MIR SINE MIR 75 231 -31 1707 47 0 23 chr12 139964559 139964804 -4317685 + AluY SINE Alu 74 313 0 805 191 116 20 chr12 139965177 139965376 -4317113 - MER20 DNA MER1_type 0 219 2 489 275 110 24 chr12 139966425 139966759 -4315730 + L1MC4a LINE L1 5196 5562 -735 948 152 0 41 chr12 139966766 139966811 -4315678 - FRAM SINE Alu -148 164 119 2537 104 8 6 chr12 139966811 139967165 -4315324 + THE1A LTR MaLR 1 355 0 948 152 0 41 chr12 139967165 139967290 -4315199 - FRAM SINE Alu -193 119 1 504 286 97 5 chr12 139967293 139967499 -4314990 + L1MC4a LINE L1 5554 5778 -343 262 279 52 32 chr12 139967507 139967661 -4314828 - Charlie7 DNA MER1_type 0 2612 2456 245 244 0 64 chr12 139968672 139968750 -4313739 + L2 LINE L2 3010 3082 -190 296 294 26 40 chr12 139969098 139969366 -4313123 - MLT1H LTR MaLR -219 376 115 264 276 41 56 chr12 139969892 139970086 -4312403 + L1MC4a LINE L1 5746 5798 -323 1701 191 9 12 chr12 139970086 139970432 -4312057 + L1MB3 LINE L1 5839 6183 0 264 276 41 56 chr12 139970432 139970457 -4312032 + L1MC4a LINE L1 5798 5822 -299 219 230 48 16 chr12 139970659 139970785 -4311704 + (TA)n Simple_repeat Simple_repeat 1 130 0 1501 228 16 38 chr12 139971538 139971911 -4310578 - MLT1A1 LTR MaLR 0 365 1 227 206 15 44 chr12 139971911 139971979 -4310510 - MER113 DNA MER1_type? -45 476 411 344 217 19 87 chr12 139972127 139972288 -4310201 - MER113 DNA MER1_type? -368 153 4 246 292 168 9 chr12 139972329 139972442 -4310047 - MIR SINE MIR -8 254 124 1825 154 20 23 chr12 139972503 139972808 -4309681 + AluJb SINE Alu 1 304 -8 1409 186 138 21 chr12 139972919 139973246 -4309243 + MLT1A1 LTR MaLR 1 365 0 226 269 0 0 chr12 139973691 139973769 -4308720 + CT-rich Low_complexity Low_complexity 1 78 0 744 247 20 18 chr12 139974072 139974265 -4308224 + MIR SINE MIR 20 216 -46 260 357 55 60 chr12 139974521 139974888 -4307601 + L3 LINE CR1 660 1024 -553 1780 167 3 20 chr12 139975131 139975425 -4307064 - AluJo SINE Alu -15 297 9 2663 211 53 8 chr12 139975440 139976060 -4306429 - L1MB7 LINE L1 0 6184 5537 2428 95 20 0 chr12 139976120 139976425 -4306064 + AluSx SINE Alu 1 311 -1 185 330 70 26 chr12 139976678 139976793 -4305696 + L2 LINE L2 3152 3271 -1 399 344 58 16 chr12 139976851 139977040 -4305449 + L3 LINE CR1 1306 1502 -75 308 276 8 0 chr12 139977173 139977300 -4305189 + (TGGA)n Simple_repeat Simple_repeat 3 130 0 367 289 11 0 chr12 139977330 139977609 -4304880 + (TGGA)n Simple_repeat Simple_repeat 1 282 0 251 250 12 0 chr12 139977630 139977714 -4304775 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 365 271 7 0 chr12 139977733 139977888 -4304601 + (TGGA)n Simple_repeat Simple_repeat 4 159 0 186 250 0 0 chr12 139977904 139977960 -4304529 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 466 223 133 18 chr12 139979486 139979652 -4302837 - MER5A DNA MER1_type -3 186 2 406 273 85 12 chr12 139979666 139979831 -4302658 + L2 LINE L2 2189 2365 -949 338 167 102 65 chr12 139980031 139980139 -4302350 + L1MA7 LINE L1 6060 6171 -120 2360 193 90 21 chr12 139980240 139980809 -4301680 - L1MB7 LINE L1 -66 6118 5511 1341 117 9 30 chr12 139980887 139981117 -4301372 - L1PB1 LINE L1 0 6151 5927 223 158 18 18 chr12 139981284 139981341 -4301148 + CT-rich Low_complexity Low_complexity 4 60 0 230 355 121 24 chr12 139981348 139981472 -4301017 - L2 LINE L2 -5 3267 3132 502 294 107 5 chr12 139981482 139981669 -4300820 - MIR SINE MIR -56 206 1 257 248 62 9 chr12 139981702 139981815 -4300674 - L1MC4 LINE L1 0 8042 7924 629 135 25 29 chr12 139981855 139982105 -4300384 + (TAGA)n Simple_repeat Simple_repeat 1 249 0 1161 268 28 32 chr12 139982105 139982571 -4299918 - L1MC4 LINE L1 -133 7909 7446 227 201 206 70 chr12 139982641 139982840 -4299649 - L1ME4a LINE L1 -2 6119 5894 321 350 68 11 chr12 139983482 139983659 -4298830 - L2 LINE L2 -4 3309 3123 371 317 65 0 chr12 139984674 139984797 -4297692 + MIR SINE MIR 94 224 -38 1097 180 47 9 chr12 139984835 139985046 -4297443 + MER20 DNA MER1_type 1 219 0 545 275 115 23 chr12 139985142 139985360 -4297129 + MIR SINE MIR 20 257 -5 462 256 5 0 chr12 139985767 139986165 -4296324 + (CA)n Simple_repeat Simple_repeat 1 400 0 206 205 0 0 chr12 139986165 139986204 -4296285 + (CACG)n Simple_repeat Simple_repeat 3 41 0 489 239 0 0 chr12 139986940 139987176 -4295313 + (CA)n Simple_repeat Simple_repeat 1 236 0 486 235 0 0 chr12 139987246 139987416 -4295073 + (CA)n Simple_repeat Simple_repeat 1 170 0 210 244 0 0 chr12 139987440 139987522 -4294967 + (CA)n Simple_repeat Simple_repeat 1 82 0 522 230 0 0 chr12 139987546 139987720 -4294769 + (CA)n Simple_repeat Simple_repeat 1 174 0 605 185 0 22 chr12 139987768 139987952 -4294537 + (CA)n Simple_repeat Simple_repeat 1 180 0 555 225 0 0 chr12 139987971 139988340 -4294149 + (CA)n Simple_repeat Simple_repeat 1 369 0 805 116 78 0 chr12 139988353 139988482 -4294007 + MLT1A1 LTR MaLR 227 365 0 353 259 30 38 chr12 139988508 139988639 -4293850 - MIR3 SINE MIR -43 165 36 333 250 48 24 chr12 139988812 139988823 -4293666 + L1MC4 LINE L1 6613 6622 -1420 2142 34 0 0 chr12 139988823 139989062 -4293427 + AluY SINE Alu 47 285 -26 333 250 48 24 chr12 139989062 139989134 -4293355 + L1MC4 LINE L1 6622 6698 -1344 211 211 0 0 chr12 139989187 139989225 -4293264 + (TG)n Simple_repeat Simple_repeat 2 39 0 1359 178 116 29 chr12 139989980 139990256 -4292233 + AluJo SINE Alu 2 301 -11 228 256 115 13 chr12 139990329 139990407 -4292082 + MLT1K LTR MaLR 439 524 -64 1920 189 139 9 chr12 139990588 139991012 -4291477 - MLT1D LTR MaLR 0 505 27 258 208 57 0 chr12 139991053 139991106 -4291383 + LTR67 LTR ERVL 499 554 -3 1317 146 13 99 chr12 139991762 139991870 -4290619 - L1MA8 LINE L1 0 6291 6175 507 136 0 12 chr12 139991870 139991951 -4290538 + MADE1 DNA Mariner 1 80 0 1317 146 13 99 chr12 139991951 139992050 -4290439 - L1MA8 LINE L1 -116 6175 6069 2031 99 4 0 chr12 139992050 139992303 -4290186 + AluSx SINE Alu 35 288 -24 1317 146 13 99 chr12 139992303 139992478 -4290011 - L1MA8 LINE L1 -222 6069 5941 841 180 0 12 chr12 139992578 139992745 -4289744 - L1MA8 LINE L1 -380 5911 5747 257 214 57 14 chr12 139992767 139992837 -4289652 - MER102a DNA MER1_type -3 327 255 871 250 19 5 chr12 139993113 139993325 -4289164 + MER58A DNA MER1_type 2 216 -8 313 277 50 30 chr12 139993829 139993930 -4288559 + MER91B DNA MER1_type 87 189 -1 1562 165 22 6 chr12 139994006 139994322 -4288167 - MER33 DNA MER1_type -3 321 1 1101 228 73 84 chr12 139994912 139995175 -4287314 - LTR40b LTR ERVL 0 462 205 1455 196 57 52 chr12 139995175 139995543 -4286946 + MLT1A2 LTR MaLR 5 374 0 1101 228 73 84 chr12 139995543 139995744 -4286745 - LTR40b LTR ERVL -257 205 3 334 266 9 71 chr12 139995745 139995858 -4286631 + MIR SINE MIR 56 161 -101 188 308 22 11 chr12 139996706 139996797 -4285692 - L2 LINE L2 -270 3002 2911 543 287 98 14 chr12 139997093 139997368 -4285121 + LTR16C LTR ERVL 191 488 -3 194 306 35 35 chr12 139998328 139998413 -4284076 + L3 LINE CR1 1122 1206 -371 884 208 41 5 chr12 139998513 139998710 -4283779 + MIR SINE MIR 41 244 -18 728 176 26 106 chr12 139998712 139998874 -4283615 + MER3 DNA MER1_type 1 142 -67 1733 166 20 30 chr12 139998874 139999176 -4283313 + AluJo SINE Alu 1 299 -13 728 176 26 106 chr12 139999176 139999240 -4283249 + MER3 DNA MER1_type 142 209 0 495 283 37 75 chr12 140000529 140000716 -4281773 + MER91B DNA MER1_type 1 180 -10 698 322 159 14 chr12 140001241 140001807 -4280682 + L2 LINE L2 2622 3272 0 307 170 19 0 chr12 140001826 140001879 -4280610 + L2 LINE L2 3219 3272 0 415 314 103 10 chr12 140002049 140002243 -4280246 + MIR SINE MIR 20 231 -31 264 208 0 0 chr12 140002704 140002752 -4279737 - Charlie8 DNA MER1_type -1000 1417 1370 599 226 154 16 chr12 140002846 140003023 -4279466 - MLT1E2 LTR MaLR 0 610 430 235 229 108 102 chr12 140003127 140003284 -4279205 - MLT1D LTR MaLR -342 163 6 955 307 50 5 chr12 140004337 140004715 -4277774 - LTR16C LTR ERVL 0 491 97 308 241 105 45 chr12 140004872 140005005 -4277484 - MLT1K LTR MaLR -26 562 422 673 325 10 23 chr12 140005042 140005363 -4277126 - L1MEc LINE L1 -4933 1186 896 2351 117 0 0 chr12 140005366 140005675 -4276814 - AluSx SINE Alu -3 309 1 318 294 88 62 chr12 140005699 140005971 -4276518 - L1 LINE L1 -1658 4488 4210 2954 94 5 0 chr12 140006615 140007028 -4275461 - L1PA13 LINE L1 0 6163 5749 472 103 31 0 chr12 140007162 140007244 -4275245 - L1PA13 LINE L1 -427 5738 5649 664 120 9 0 chr12 140007617 140007725 -4274764 + L1MA5 LINE L1 5795 5903 -397 551 264 7 45 chr12 140012414 140012569 -4269920 - MER5A DNA MER1_type -38 151 3 943 215 4 47 chr12 140012762 140012838 -4269651 - L1MB7 LINE L1 0 6184 6106 2350 96 3 0 chr12 140012838 140013141 -4269348 - AluSp SINE Alu -9 304 1 943 215 4 47 chr12 140013141 140013320 -4269169 - L1MB7 LINE L1 -78 6106 5940 1783 160 3 37 chr12 140013704 140014004 -4268485 + AluJo SINE Alu 2 291 -21 2483 68 0 3 chr12 140014750 140015046 -4267443 + AluY SINE Alu 1 295 -16 243 348 144 8 chr12 140015131 140015249 -4267240 - L2 LINE L2 -2 3270 3137 325 263 131 22 chr12 140015471 140015608 -4266881 - MIR SINE MIR 0 262 111 373 248 76 38 chr12 140015623 140015861 -4266628 + L1M4 LINE L1 2259 2505 -3641 293 200 67 11 chr12 140015831 140015921 -4266568 + L1M4 LINE L1 4430 4524 -1622 * 379 241 0 0 chr12 140015921 140016008 -4266481 + MLT1D LTR MaLR 419 505 0 605 355 91 11 chr12 140016016 140016673 -4265816 - ERVL LTR ERVL -1455 4309 3600 275 250 0 0 chr12 140016856 140016916 -4265573 - ERVL LTR ERVL -2062 3423 3364 882 270 107 33 chr12 140016924 140017354 -4265135 - MLT1C LTR MaLR 0 467 6 674 346 45 24 chr12 140017430 140018026 -4264463 - ERVL LTR ERVL -1922 3074 2655 238 229 61 76 chr12 140018216 140018347 -4264142 - LTR16C LTR ERVL -290 201 73 484 295 117 31 chr12 140018550 140018842 -4263647 - L2 LINE L2 -259 3054 2736 693 211 23 0 chr12 140018877 140019005 -4263484 - MIR SINE MIR -95 167 37 1151 180 35 0 chr12 140019100 140019300 -4263189 - MER3 DNA MER1_type 0 209 3 1366 108 11 5 chr12 140019746 140019932 -4262557 - AluSx SINE Alu -125 187 1 658 316 35 55 chr12 140020081 140020307 -4262182 - MLT1K LTR MaLR -43 545 316 2262 95 0 51 chr12 140020307 140020622 -4261867 - AluSx SINE Alu -13 299 1 658 316 35 55 chr12 140020622 140020908 -4261581 - MLT1K LTR MaLR -272 316 43 902 180 56 92 chr12 140021372 140021656 -4260833 - MLT1C LTR MaLR -6 461 188 449 279 36 21 chr12 140022114 140022254 -4260235 + MIR SINE MIR 2 143 -119 2129 116 7 3 chr12 140022338 140022623 -4259866 + AluSq SINE Alu 2 328 0 370 0 0 0 chr12 140022623 140022664 -4259825 + (TAAA)n Simple_repeat Simple_repeat 1 140 0 361 259 271 12 chr12 140022700 140022947 -4259542 + L2 LINE L2 3003 3313 0 245 221 132 66 chr12 140024204 140024340 -4258149 - MLT1C LTR MaLR -325 224 80 711 273 42 39 chr12 140024366 140024626 -4257863 + MIR SINE MIR 2 262 0 638 208 7 0 chr12 140024664 140024813 -4257676 + (TG)n Simple_repeat Simple_repeat 1 150 0 1374 158 32 37 chr12 140024999 140025245 -4257244 + AluJo SINE Alu 38 282 -30 1362 260 56 30 chr12 140025319 140025567 -4256922 - L2 LINE L2 0 3313 3073 2181 138 0 16 chr12 140025567 140025878 -4256611 + AluSx SINE Alu 1 306 -6 1362 260 56 30 chr12 140025878 140025920 -4256569 - L2 LINE L2 -240 3073 3034 925 221 18 18 chr12 140025920 140026137 -4256352 - MER20 DNA MER1_type 0 219 3 1362 260 56 30 chr12 140026137 140026374 -4256115 - L2 LINE L2 -279 3034 2778 241 238 175 0 chr12 140026460 140026540 -4255949 - MLT1C LTR MaLR -368 99 6 253 223 152 18 chr12 140026553 140026665 -4255824 + LTR33 LTR ERVL 382 508 -13 185 171 29 0 chr12 140027006 140027041 -4255448 + MIR SINE MIR 117 152 -110 197 62 0 31 chr12 140027410 140027442 -4255047 + (TC)n Simple_repeat Simple_repeat 2 32 0 305 298 79 28 chr12 140027451 140027629 -4254860 - L1MEd LINE L1 -4953 1166 980 403 150 52 20 chr12 140027646 140027799 -4254690 + CT-rich Low_complexity Low_complexity 1 158 0 328 271 59 25 chr12 140028817 140028935 -4253554 + L2 LINE L2 3189 3310 -3 1870 127 8 11 chr12 140031642 140031910 -4250579 + AluSx SINE Alu 7 273 -39 489 47 0 0 chr12 140031913 140031977 -4250512 + (GGAA)n Simple_repeat Simple_repeat 4 67 0 402 337 51 6 chr12 140032021 140032196 -4250293 - L2 LINE L2 -2 3311 3129 1912 134 0 60 chr12 140032573 140032887 -4249602 + AluSx SINE Alu 1 295 -17 206 317 199 5 chr12 140032995 140033181 -4249308 + L2 LINE L2 2856 3077 -195 207 0 0 95 chr12 140033270 140033312 -4249177 + (GGGTG)n Simple_repeat Simple_repeat 2 39 0 346 271 123 73 chr12 140033337 140033775 -4248714 + LTR33 LTR ERVL 2 503 -20 340 290 16 113 chr12 140033991 140034177 -4248312 + MER5B DNA MER1_type 7 174 -4 2435 67 11 67 chr12 140034238 140034412 -4248077 + THE1C LTR MaLR 1 144 -231 2536 65 7 0 chr12 140034412 140034720 -4247769 - AluY SINE Alu -1 310 1 2435 67 11 67 chr12 140034720 140034920 -4247569 + THE1C LTR MaLR 144 354 -21 230 278 0 0 chr12 140035213 140035267 -4247222 + L2 LINE L2 3219 3272 0 201 395 55 0 chr12 140035787 140035896 -4246593 - L2 LINE L2 0 3272 3158 1291 185 57 30 chr12 140036391 140036656 -4245833 + AluJo SINE Alu 23 294 -18 412 295 40 12 chr12 140037637 140037810 -4244679 - MLT1H LTR MaLR -371 178 1 230 284 21 11 chr12 140037810 140037903 -4244586 - LTR33A LTR ERVL -11 512 419 296 126 0 158 chr12 140038541 140038636 -4243853 - MLT2D LTR ERVL 0 414 354 437 222 6 17 chr12 140038650 140038830 -4243659 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 839 124 37 13 chr12 140038845 140039293 -4243196 + (TAGA)n Simple_repeat Simple_repeat 1 458 0 777 161 18 0 chr12 140039327 140039495 -4242994 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 200 228 18 0 chr12 140039514 140039571 -4242918 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 1412 230 127 25 chr12 140039573 140040007 -4242482 - MLT2B1 LTR ERVL -42 478 1 422 251 82 75 chr12 140040918 140041173 -4241316 + MER102a DNA MER1_type 74 330 0 1523 267 78 40 chr12 140041301 140042115 -4240374 - L2 LINE L2 -19 3294 2446 292 327 18 18 chr12 140042254 140042367 -4240122 - MIR SINE MIR -128 134 22 595 198 9 0 chr12 140042759 140042865 -4239624 + MER5B DNA MER1_type 20 126 -52 270 325 25 12 chr12 140042897 140042977 -4239512 - MIR SINE MIR -154 108 28 503 299 28 23 chr12 140043086 140043263 -4239226 - MER5B DNA MER1_type 0 178 1 530 137 0 78 chr12 140043447 140043549 -4238940 - AluSg/x SINE Alu -11 298 205 710 129 0 0 chr12 140043837 140043938 -4238551 - AluJ/FLAM SINE Alu -210 102 2 441 244 202 23 chr12 140045411 140045612 -4236877 - MIR SINE MIR -12 250 21 322 322 0 0 chr12 140045670 140045760 -4236729 + CT-rich Low_complexity Low_complexity 4 93 0 201 271 104 21 chr12 140046973 140047069 -4235420 + MIR SINE MIR 134 237 -25 825 288 5 0 chr12 140048602 140048817 -4233672 - MER58A DNA MER1_type -8 216 1 441 312 14 22 chr12 140048910 140049048 -4233441 + MIR3 SINE MIR 21 157 -51 304 200 90 117 chr12 140049203 140049348 -4233141 - LTR67 LTR ERVL -8 549 409 3669 116 0 52 chr12 140049714 140050268 -4232221 - MER1A DNA MER1_type 0 527 3 377 200 11 42 chr12 140051027 140051122 -4231367 + MER5B DNA MER1_type 87 178 0 292 286 231 7 chr12 140051553 140051700 -4230789 - MER5A DNA MER1_type -1 188 9 486 249 150 61 chr12 140051706 140052019 -4230470 - MLT1K LTR MaLR -126 462 122 259 340 0 48 chr12 140052039 140052227 -4230262 + (GGGTG)n Simple_repeat Simple_repeat 1 179 0 482 236 47 42 chr12 140052397 140052606 -4229883 + MER58 DNA MER1_type 1 2416 -4 2062 145 39 25 chr12 140052991 140053350 -4229139 + THE1B LTR MaLR 1 364 0 2118 147 0 6 chr12 140054439 140054753 -4227736 + AluJo SINE Alu 1 312 0 317 259 68 41 chr12 140054821 140054968 -4227521 - L2 LINE L2 -69 3244 3094 533 203 94 7 chr12 140055564 140055702 -4226787 + LTR33 LTR ERVL 18 167 -354 1319 242 42 31 chr12 140055703 140056161 -4226328 + MLT1C LTR MaLR 5 467 0 494 276 33 19 chr12 140056256 140056470 -4226019 + LTR33 LTR ERVL 304 520 -1 2307 120 0 0 chr12 140056552 140056851 -4225638 + AluSx SINE Alu 1 299 -13 369 0 0 0 chr12 140056851 140056892 -4225597 + (TA)n Simple_repeat Simple_repeat 2 42 0 585 30 0 0 chr12 140057835 140057902 -4224587 + L1PA5 LINE L1 6074 6140 -14 195 42 0 0 chr12 140057912 140057936 -4224553 + (TA)n Simple_repeat Simple_repeat 1 24 0 2268 102 0 3 chr12 140058015 140058309 -4224180 + AluSx SINE Alu 1 293 -19 698 228 89 45 chr12 140058611 140058754 -4223735 + MIR SINE MIR 3 163 -99 2416 92 0 3 chr12 140058754 140059058 -4223431 + AluSg1 SINE Alu 1 303 -6 698 228 89 45 chr12 140059058 140059160 -4223329 + MIR SINE MIR 163 259 -3 379 174 47 23 chr12 140059591 140059677 -4222812 + Charlie4a DNA MER1_type 30 117 -391 1852 164 33 38 chr12 140059678 140059901 -4222588 - MLT1A1 LTR MaLR 0 365 143 2143 139 30 35 chr12 140059901 140060267 -4222222 - THE1B LTR MaLR 0 364 1 1852 164 33 38 chr12 140060267 140060409 -4222080 - MLT1A1 LTR MaLR -222 143 2 743 257 95 62 chr12 140060409 140060606 -4221883 + Charlie4a DNA MER1_type 140 328 -1633 2357 99 3 10 chr12 140060606 140060919 -4221570 - AluSx SINE Alu -1 311 1 743 257 95 62 chr12 140060919 140060930 -4221559 + Charlie4a DNA MER1_type 328 337 -1624 2256 131 0 0 chr12 140060930 140061235 -4221254 - AluSx SINE Alu -7 305 1 743 257 95 62 chr12 140061235 140061362 -4221127 + Charlie4a DNA MER1_type 337 488 -20 208 248 9 128 chr12 140061720 140061829 -4220660 + L2 LINE L2 3132 3227 -86 197 206 56 151 chr12 140061854 140061980 -4220509 + L2 LINE L2 3114 3227 -86 249 325 38 19 chr12 140062556 140062716 -4219773 + L2 LINE L2 2525 2687 -627 664 284 178 24 chr12 140062813 140063183 -4219306 + L2 LINE L2 2883 3309 -4 295 277 36 36 chr12 140063213 140063325 -4219164 + L2 LINE L2 3202 3313 0 688 168 0 27 chr12 140063732 140063976 -4218513 + AluJ SINE Alu 10 296 -16 1018 218 70 12 chr12 140063981 140064178 -4218311 + L1MB1 LINE L1 5911 6126 -42 2228 114 0 3 chr12 140064178 140064476 -4218013 + AluSg SINE Alu 3 299 -11 1018 218 70 12 chr12 140064476 140064521 -4217968 + L1MB1 LINE L1 6126 6167 -1 339 277 226 7 chr12 140064578 140064733 -4217756 - MER5A DNA MER1_type 0 189 1 239 322 92 26 chr12 140064756 140064908 -4217581 + MER5B DNA MER1_type 17 178 0 301 358 81 19 chr12 140064908 140065229 -4217260 + L2 LINE L2 2973 3313 0 2205 92 11 0 chr12 140065243 140065525 -4216964 + AluSg SINE Alu 1 285 -25 781 257 35 0 chr12 140065630 140065832 -4216657 + MER3 DNA MER1_type 1 209 0 568 254 183 18 chr12 140066076 140066360 -4216129 - MLT1K LTR MaLR -8 580 250 343 250 0 23 chr12 140066747 140066835 -4215654 + MIR SINE MIR 177 262 0 514 245 0 0 chr12 140067329 140067422 -4215067 + Charlie1 DNA MER1_type 1 93 -2668 1405 216 199 9 chr12 140067422 140067875 -4214614 - MLT1F LTR MaLR 0 542 4 316 287 163 0 chr12 140067878 140068007 -4214482 + Charlie1 DNA MER1_type 89 238 -2523 * 649 231 0 0 chr12 140067992 140068126 -4214363 + Charlie1 DNA MER1_type 2622 2755 -6 325 294 18 18 chr12 140068443 140068552 -4213937 - L2 LINE L2 0 3313 3205 1956 137 7 7 chr12 140068573 140068865 -4213624 - AluJo SINE Alu -20 292 1 370 229 186 71 chr12 140069025 140069165 -4213324 - MER91B DNA MER1_type -34 156 1 186 43 0 0 chr12 140069946 140069969 -4212520 + (T)n Simple_repeat Simple_repeat 1 23 0 3213 191 10 37 chr12 140070642 140070802 -4211687 - L1MA10 LINE L1 -37 6297 6134 390 21 0 0 chr12 140070802 140070849 -4211640 + (TG)n Simple_repeat Simple_repeat 2 48 0 3213 191 10 37 chr12 140070849 140071412 -4211077 - L1MA10 LINE L1 -200 6134 5594 411 349 31 31 chr12 140071495 140071690 -4210799 - MIR SINE MIR -33 229 35 635 165 0 0 chr12 140071814 140071917 -4210572 - FLAM_A SINE Alu -10 132 30 599 303 68 21 chr12 140072690 140072924 -4209565 - MIR SINE MIR -1 261 17 1005 158 0 0 chr12 140073035 140073118 -4209371 + (ATGGTG)n Simple_repeat Simple_repeat 1 260 0 1005 158 0 0 chr12 140073118 140073295 -4209194 + (ATGGTG)n Simple_repeat Simple_repeat 4 180 0 411 246 0 0 chr12 140073684 140073810 -4208679 + (ATG)n Simple_repeat Simple_repeat 3 128 0 528 261 18 0 chr12 140074028 140074139 -4208350 + MER81 DNA DNA 1 113 -1 420 304 75 47 chr12 140074295 140074509 -4207980 + MER102b DNA MER1_type 111 330 -11 1851 161 20 74 chr12 140074620 140074945 -4207544 + L1MB8 LINE L1 5802 6104 -74 1509 163 36 11 chr12 140074945 140075221 -4207268 + AluJb SINE Alu 1 283 -29 1851 161 20 74 chr12 140075221 140075287 -4207202 + L1MB8 LINE L1 6104 6172 -6 1602 238 49 20 chr12 140075648 140076094 -4206395 + MLT1C LTR MaLR 6 464 -3 1938 110 19 54 chr12 140076117 140076434 -4206055 - AluSx SINE Alu -6 306 1 1506 105 9 5 chr12 140076445 140076701 -4205788 - AluSx SINE Alu 0 319 63 2189 162 80 0 chr12 140076730 140077119 -4205370 + MSTB LTR MaLR 3 422 -4 450 252 42 0 chr12 140077123 140077242 -4205247 - MIR SINE MIR -135 127 4 2018 277 45 31 chr12 140078229 140079092 -4203397 + L1ME1 LINE L1 5293 6159 -7 330 303 73 33 chr12 140083480 140083751 -4198738 - MLT1J2 LTR MaLR -18 432 113 1656 149 0 30 chr12 140084778 140085073 -4197416 + AluJo SINE Alu 6 291 -21 469 259 290 10 chr12 140085843 140086313 -4196176 - L2 LINE L2 -1 3312 2696 2603 180 78 4 chr12 140087247 140087759 -4194730 + L1MB7 LINE L1 5633 6182 -2 562 282 27 72 chr12 140087838 140088100 -4194389 + MIR SINE MIR 6 255 -7 1710 195 70 18 chr12 140088403 140088845 -4193644 + MLT1C LTR MaLR 1 465 -2 300 243 14 0 chr12 140088979 140089053 -4193436 + LTR50 LTR ERVL 4 78 -717 834 222 125 119 chr12 140090213 140090377 -4192112 - MLT1J LTR MaLR -3 508 346 2262 95 0 0 chr12 140090377 140090683 -4191806 - AluSx SINE Alu -6 306 1 834 222 125 119 chr12 140090683 140090874 -4191615 - MLT1J LTR MaLR -165 346 147 1090 144 11 21 chr12 140090874 140091061 -4191428 - MER5A DNA MER1_type -4 185 1 834 222 125 119 chr12 140091061 140091209 -4191280 - MLT1J LTR MaLR -364 147 1 1950 121 5 105 chr12 140091739 140092110 -4190379 - LTR45B LTR ERV1 -153 336 3 296 226 147 0 chr12 140092219 140092321 -4190168 - MIR SINE MIR -29 233 117 777 226 55 6 chr12 140093415 140093596 -4188893 - MER58C DNA MER1_type 0 215 26 392 325 75 28 chr12 140094243 140094455 -4188034 + MIR SINE MIR 20 241 -21 207 235 0 20 chr12 140094547 140094598 -4187891 + MIR SINE MIR 69 118 -90 490 109 46 40 chr12 140095235 140095410 -4187079 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 916 262 11 23 chr12 140095471 140095734 -4186755 - MLT2C1 LTR ERVL -123 274 15 329 272 105 42 chr12 140095770 140096077 -4186412 + L1MC/D LINE L1 5524 5849 -321 344 222 94 77 chr12 140096081 140096198 -4186291 + L1ME3A LINE L1 5811 5929 -241 370 272 210 36 chr12 140096648 140096843 -4185646 - MIR SINE MIR -18 244 16 403 268 160 42 chr12 140096855 140097068 -4185421 + MIR SINE MIR 14 251 -11 1759 208 64 0 chr12 140097418 140097808 -4184681 - L1MB7 LINE L1 -16 6168 5758 207 218 0 0 chr12 140098021 140098076 -4184413 + (TG)n Simple_repeat Simple_repeat 1 55 0 592 263 40 62 chr12 140149268 140149492 -4132997 - MLT1K LTR MaLR 0 588 370 2388 52 0 0 chr12 140149595 140149885 -4132604 + AluY SINE Alu 2 291 -20 351 78 0 0 chr12 140150979 140151030 -4131459 + (CA)n Simple_repeat Simple_repeat 2 52 0 329 262 28 76 chr12 140151223 140151368 -4131121 - LTR67 LTR ERVL -76 481 344 225 287 11 64 chr12 140152099 140152167 -4130322 - LTR67 LTR ERVL -430 127 64 1698 217 64 21 chr12 140152167 140152651 -4129838 + MLT1D LTR MaLR 1 505 0 225 287 11 64 chr12 140152651 140152676 -4129813 - LTR67 LTR ERVL -493 64 39 2244 100 0 0 chr12 140152707 140153017 -4129472 + AluSg SINE Alu 1 310 0 781 156 0 22 chr12 140154290 140154425 -4128064 + FLAM_C SINE Alu 2 133 -10 436 183 12 0 chr12 140154582 140154664 -4127825 - MER105 DNA DNA -116 88 6 302 314 54 43 chr12 140154681 140154866 -4127623 + L1MC4a LINE L1 5695 5881 -1927 768 156 16 0 chr12 140154911 140155039 -4127450 + AluJo SINE Alu 7 136 -176 3053 189 63 12 chr12 140155048 140155703 -4126786 + L1MB8 LINE L1 5491 6178 0 1523 152 87 22 chr12 140155744 140156020 -4126469 - AluJo SINE Alu -13 299 6 238 194 129 0 chr12 140156235 140156297 -4126192 + L1MC5 LINE L1 7831 7900 -61 261 83 0 0 chr12 140157875 140157911 -4124578 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 268 319 11 0 chr12 140157921 140158015 -4124474 - L2 LINE L2 -35 3278 3184 1048 205 40 64 chr12 140158019 140158329 -4124160 + L1MB7 LINE L1 5771 6076 -108 623 255 94 47 chr12 140158477 140158795 -4123694 - MLT1H LTR MaLR -105 444 112 1631 179 14 63 chr12 140158802 140158827 -4123662 - L1MB8 LINE L1 0 6178 6153 2505 119 16 5 chr12 140158827 140159198 -4123291 - THE1C LTR MaLR 0 375 1 1631 179 14 63 chr12 140159198 140159586 -4122903 - L1MB8 LINE L1 -25 6153 5785 595 163 23 54 chr12 140159588 140159717 -4122772 - MLT1H LTR MaLR -421 128 4 558 280 42 12 chr12 140159777 140159945 -4122544 + MLT1L LTR MaLR 118 290 -325 932 189 69 131 chr12 140160076 140160209 -4122280 + MLT1B LTR MaLR 53 193 -197 1677 182 0 22 chr12 140160209 140160527 -4121962 + AluJb SINE Alu 1 311 -1 932 189 69 131 chr12 140160527 140160753 -4121736 + MLT1B LTR MaLR 193 390 0 1995 133 0 0 chr12 140160780 140161073 -4121416 + AluSx SINE Alu 1 293 -19 713 116 22 14 chr12 140161077 140161215 -4121274 + GA-rich Low_complexity Low_complexity 3 141 0 267 290 0 0 chr12 140161966 140162128 -4120361 + (CA)n Simple_repeat Simple_repeat 1 162 0 189 121 0 0 chr12 140162148 140162181 -4120308 + (CA)n Simple_repeat Simple_repeat 2 34 0 2525 219 61 7 chr12 140162713 140163285 -4119204 - L1MB5 LINE L1 0 6174 5572 1738 143 33 0 chr12 140163308 140163619 -4118870 - AluSx SINE Alu 0 320 1 210 177 73 21 chr12 140163669 140163765 -4118724 + (TTAA)n Simple_repeat Simple_repeat 3 103 0 190 203 102 34 chr12 140164046 140164105 -4118384 + MIR SINE MIR 85 147 -61 413 276 41 8 chr12 140164245 140164368 -4118121 + MLT1G1 LTR MaLR 61 187 -408 677 279 102 38 chr12 140165139 140165769 -4116720 + HAL1 LINE L1 1000 1669 -838 1640 157 0 51 chr12 140165811 140165949 -4116540 + AluJb SINE Alu 9 153 -159 1823 132 14 7 chr12 140165949 140166245 -4116244 + AluSx SINE Alu 1 298 -14 1640 157 0 51 chr12 140166245 140166418 -4116071 + AluJb SINE Alu 153 304 -8 1090 234 83 6 chr12 140167552 140167831 -4114658 - MLT1D LTR MaLR 0 505 219 278 188 0 0 chr12 140167959 140168007 -4114482 - MLT1D LTR MaLR -555 71 24 1764 168 3 19 chr12 140168008 140168356 -4114133 - AluSx SINE Alu 0 343 1 230 192 0 51 chr12 140168635 140168713 -4113776 + L1ME4a LINE L1 6045 6118 -3 278 249 144 116 chr12 140169064 140169237 -4113252 - MER5A DNA MER1_type 0 189 12 2395 118 19 25 chr12 140169500 140169866 -4112623 - THE1B LTR MaLR 0 364 1 1893 118 66 0 chr12 140169984 140170273 -4112216 + AluSx SINE Alu 5 312 0 2542 173 30 12 chr12 140170303 140170807 -4111682 + L1MB7 LINE L1 5619 6131 -53 2176 120 0 0 chr12 140170814 140171123 -4111366 + AluSx SINE Alu 1 309 -3 422 308 45 25 chr12 140171130 140171328 -4111161 + MIR SINE MIR 61 262 0 871 322 25 43 chr12 140172193 140172322 -4110167 + MER115 DNA AcHobo 1 131 -562 1822 165 17 67 chr12 140172322 140172728 -4109761 + MLT1B LTR MaLR 5 390 0 871 322 25 43 chr12 140172728 140173039 -4109450 + MER115 DNA AcHobo 131 433 -260 432 264 42 79 chr12 140173037 140173253 -4109236 + MER115 DNA AcHobo 366 573 -120 * 1406 211 107 66 chr12 140173313 140173769 -4108720 + MER66A LTR ERV1 97 476 -2 452 244 79 24 chr12 140173771 140173898 -4108591 + Zaphod DNA AcHobo 3896 4029 -2 721 233 84 20 chr12 140174151 140174472 -4108017 + MLT1G LTR MaLR 254 590 0 280 0 0 0 chr12 140174549 140174580 -4107909 + (TTTG)n Simple_repeat Simple_repeat 2 172 0 2085 124 0 28 chr12 140174580 140174871 -4107618 - AluSx SINE Alu -27 285 3 426 333 107 25 chr12 140175096 140175489 -4107000 - MLT1L LTR MaLR -41 574 150 2215 125 0 0 chr12 140175579 140175891 -4106598 - AluSx SINE Alu 0 312 1 193 281 53 0 chr12 140175928 140175985 -4106504 - L2 LINE L2 -213 3059 3000 1961 117 39 46 chr12 140176754 140177061 -4105428 - AluSq SINE Alu -8 305 1 794 208 128 75 chr12 140177449 140177807 -4104682 + MLT1D LTR MaLR 17 393 -112 579 241 1 8 chr12 140177807 140177941 -4104548 - MLT1C LTR MaLR 0 467 247 422 213 110 31 chr12 140178096 140178223 -4104266 + MIR SINE MIR 111 247 -15 198 278 65 46 chr12 140178253 140178361 -4104128 - L2 LINE L2 -21 3251 3142 2345 106 0 3 chr12 140178459 140178770 -4103719 + AluSx SINE Alu 1 310 -2 212 297 84 27 chr12 140179036 140179209 -4103280 + MIR SINE MIR 3 185 -63 1540 244 64 14 chr12 140179359 140179846 -4102643 + LTR53 LTR ERVL 6 516 -3 408 272 39 0 chr12 140179878 140179981 -4102508 + MIR SINE MIR 47 153 -109 777 193 0 0 chr12 140180139 140180258 -4102231 + FLAM_A SINE Alu 1 119 -14 538 339 18 5 chr12 140180321 140180539 -4101950 + MIR SINE MIR 12 232 -30 318 280 228 14 chr12 140180855 140181066 -4101423 + HAL1 LINE L1 1046 1301 -1206 215 133 22 0 chr12 140181089 140181134 -4101355 + GA-rich Low_complexity Low_complexity 2 47 0 1626 184 6 31 chr12 140182233 140182553 -4099936 - AluJb SINE Alu 0 312 1 696 186 81 0 chr12 140182553 140182677 -4099812 - AluJo SINE Alu -177 135 2 426 264 8 23 chr12 140182780 140182909 -4099580 - MLT1G LTR MaLR 0 590 464 627 277 94 4 chr12 140182962 140183197 -4099292 - MLT1G LTR MaLR -322 268 13 244 258 16 0 chr12 140183209 140183271 -4099218 + MLT1J2 LTR MaLR 54 116 -334 604 202 0 5 chr12 140183317 140183519 -4098970 - AluJb SINE Alu 0 317 22 535 307 128 63 chr12 140183520 140183979 -4098510 + L2 LINE L2 2824 3312 -1 1136 127 48 0 chr12 140184761 140184926 -4097563 + AluSq SINE Alu 1 173 -140 1546 101 113 23 chr12 140185026 140185283 -4097206 + AluSx SINE Alu 21 300 -12 1010 166 13 0 chr12 140185283 140185440 -4097049 + AluJo/FRAM SINE Alu 135 293 -19 1016 83 53 136 chr12 140185442 140185706 -4096783 + L1MA8 LINE L1 6032 6273 -18 1558 174 109 73 chr12 140185824 140186370 -4096119 + MLT1F1 LTR MaLR 1 565 -2 852 176 0 0 chr12 140186433 140186564 -4095925 - FLAM_C SINE Alu -1 132 2 1625 218 41 41 chr12 140186806 140187362 -4095127 - MER114 LTR ERV 0 648 93 2136 137 0 13 chr12 140187492 140187799 -4094690 - AluSx SINE Alu -7 305 3 2188 124 0 0 chr12 140187830 140188120 -4094369 - AluSx SINE Alu -22 290 1 800 74 0 0 chr12 140188331 140188426 -4094063 + AluSg/x SINE Alu 205 299 -11 228 198 22 11 chr12 140188462 140188553 -4093936 + (TG)n Simple_repeat Simple_repeat 2 93 0 361 272 156 0 chr12 140188958 140189131 -4093358 - MER113 DNA MER1_type? -16 505 306 860 158 79 0 chr12 140189135 140189299 -4093190 - L1MA4 LINE L1 -4 6296 6120 2333 106 7 0 chr12 140189366 140189668 -4092821 - AluSx SINE Alu -3 309 6 400 229 217 0 chr12 140189668 140189825 -4092664 + L1MA9 LINE L1 6089 6279 -33 283 359 31 8 chr12 140189871 140189999 -4092490 + MIR SINE MIR 20 150 -112 309 205 72 12 chr12 140190006 140190089 -4092400 + MLT1C LTR MaLR 379 466 -1 2899 66 6 3 chr12 140190550 140190913 -4091576 - THE1B LTR MaLR 0 364 1 1711 191 0 36 chr12 140190991 140191300 -4091189 + AluJo SINE Alu 1 298 -14 1117 306 50 24 chr12 140191302 140191799 -4090690 + MLT1K LTR MaLR 58 567 -21 2223 142 0 3 chr12 140192422 140192733 -4089756 - AluSx SINE Alu -2 310 1 1051 217 136 57 chr12 140192791 140192896 -4089593 + MLT1C LTR MaLR 6 101 -366 2450 81 7 0 chr12 140192896 140193206 -4089283 + AluSx SINE Alu 1 312 0 1051 217 136 57 chr12 140193206 140193520 -4088969 + MLT1C LTR MaLR 101 458 -9 2026 70 8 0 chr12 140194673 140194917 -4087572 + AluSx SINE Alu 55 300 -12 2408 110 0 0 chr12 140194928 140195238 -4087251 + AluSx SINE Alu 3 312 0 647 332 142 13 chr12 140195321 140195701 -4086788 + L2 LINE L2 2885 3313 0 986 166 0 0 chr12 140195773 140195930 -4086559 - AluSg/x SINE Alu -22 290 134 1963 129 0 50 chr12 140195930 140196247 -4086242 - AluSx SINE Alu -11 301 1 497 189 9 0 chr12 140196781 140196892 -4085597 + MER96B DNA MER1_type? 265 376 -41 612 179 9 0 chr12 140197111 140197223 -4085266 - MLT1D LTR MaLR -3 502 390 1022 235 59 22 chr12 140197246 140197570 -4084919 + MLT1A1 LTR MaLR 30 365 0 * 1046 199 62 90 chr12 140197570 140197970 -4084519 - MLT1D LTR MaLR -112 393 5 691 191 113 35 chr12 140197998 140198228 -4084261 + L1MA8 LINE L1 6036 6283 -8 2256 121 0 0 chr12 140198386 140198691 -4083798 + AluSx SINE Alu 1 305 -7 548 181 60 30 chr12 140199939 140200110 -4082379 - MLT1C LTR MaLR -278 189 1 981 89 0 0 chr12 140200509 140200632 -4081857 + AluSq/x SINE Alu 1 123 -190 1807 162 16 16 chr12 140200637 140200940 -4081549 + AluJb SINE Alu 1 303 -9 2438 67 7 0 chr12 140200940 140201236 -4081253 + AluSp SINE Alu 1 299 -14 2412 88 0 0 chr12 140201236 140201532 -4080957 + AluSx SINE Alu 1 296 -16 332 159 29 0 chr12 140201710 140201779 -4080710 + L2 LINE L2 1960 2030 -1284 1881 108 0 4 chr12 140201997 140202247 -4080242 - AluSx SINE Alu -10 302 54 2230 240 55 42 chr12 140203639 140204422 -4078067 - MER21B LTR ERV1 -52 811 19 283 0 29 0 chr12 140207568 140207603 -4074886 + MIR SINE MIR 111 146 -116 2209 114 3 16 chr12 140208229 140208544 -4073945 + AluSq SINE Alu 1 311 -2 184 228 0 152 chr12 140208679 140208758 -4073731 - L2 LINE L2 -1 3312 3246 2005 149 3 16 chr12 140209332 140209648 -4072841 + AluSq SINE Alu 1 312 -1 2327 88 0 3 chr12 140213031 140213325 -4069164 - AluSq SINE Alu -13 300 8 201 74 0 0 chr12 140214659 140214686 -4067803 + (ATG)n Simple_repeat Simple_repeat 1 27 0 181 276 181 19 chr12 140216974 140217079 -4065410 - L2 LINE L2 -5 3308 3187 454 310 88 43 chr12 140217291 140217620 -4064869 + L1M4 LINE L1 2699 3042 -3104 1981 78 0 0 chr12 140217639 140217881 -4064608 + AluSg SINE Alu 1 242 -68 1968 117 4 0 chr12 140218757 140219014 -4063475 - AluSx SINE Alu -16 296 39 627 60 48 0 chr12 140219163 140219246 -4063243 + AluY SINE Alu 218 304 -7 2386 84 7 0 chr12 140219960 140220258 -4062231 - AluSg SINE Alu -10 300 1 251 266 195 18 chr12 140223884 140223997 -4058492 - MIR SINE MIR -117 145 13 238 291 189 16 chr12 140224064 140224191 -4058298 + MIR3 SINE MIR 46 194 -14 322 250 192 0 chr12 140224508 140224628 -4057861 - L2 LINE L2 -8 3305 3163 2346 75 16 0 chr12 140225367 140225673 -4056816 - AluY SINE Alu 0 311 1 337 318 38 77 chr12 140225705 140225953 -4056536 - MIR SINE MIR -1 261 19 833 137 0 38 chr12 140226243 140226374 -4056115 - AluJb SINE Alu -12 300 175 235 399 78 12 chr12 140226508 140226751 -4055738 + L3 LINE CR1 1180 1438 -139 640 256 6 6 chr12 140226821 140226989 -4055500 + L1ME1 LINE L1 5996 6163 -3 314 267 26 17 chr12 140227643 140227759 -4054730 + MIR SINE MIR 132 248 -14 2020 115 22 0 chr12 140228462 140228731 -4053758 + AluSq SINE Alu 2 276 -37 1555 183 28 7 chr12 140229598 140229888 -4052601 + AluJo SINE Alu 1 296 -16 1776 169 88 5 chr12 140231672 140232056 -4050433 - L1MB7 LINE L1 -26 6158 5743 2241 107 3 0 chr12 140232171 140232461 -4050028 + AluSx SINE Alu 1 291 -21 280 262 75 9 chr12 140232505 140232612 -4049877 - L1MC4 LINE L1 -188 7854 7741 271 342 89 0 chr12 140232930 140233088 -4049401 + MIR SINE MIR 21 192 -70 296 283 91 0 chr12 140233313 140233412 -4049077 + MIR SINE MIR 36 143 -119 554 197 64 140 chr12 140233563 140233827 -4048662 + MIR SINE MIR 9 252 -10 1335 169 184 0 chr12 140233893 140234247 -4048242 + MSTB1 LTR MaLR 1 419 -13 770 274 54 67 chr12 140234417 140234655 -4047834 - MER58B DNA MER1_type -2097 323 88 2389 107 0 0 chr12 140234655 140234964 -4047525 + AluSc SINE Alu 1 309 0 770 274 54 67 chr12 140234964 140235039 -4047450 - MER58B DNA MER1_type -2332 88 14 187 235 20 0 chr12 140235465 140235516 -4046973 + L2 LINE L2 2921 2972 -341 1907 95 62 11 chr12 140235580 140235884 -4046605 - AluSx SINE Alu 0 319 2 1735 150 43 17 chr12 140235887 140236187 -4046302 - AluJo SINE Alu -4 308 1 257 261 23 11 chr12 140236354 140236442 -4046047 + G-rich Low_complexity Low_complexity 1 89 0 22 35 0 0 chr12 140236875 140236904 -4045585 + GC_rich Low_complexity Low_complexity 1 29 0 188 33 0 33 chr12 140236913 140236943 -4045546 + (CCG)n Simple_repeat Simple_repeat 3 31 0 1461 201 10 10 chr12 140237235 140237524 -4044965 - AluJb SINE Alu -15 297 9 722 188 104 35 chr12 140237699 140237901 -4044588 - MER20 DNA MER1_type -3 216 1 389 319 123 39 chr12 140237925 140238235 -4044254 + L2 LINE L2 2946 3281 -32 2534 78 0 0 chr12 140238292 140238599 -4043890 + AluSc SINE Alu 1 307 -2 1060 157 0 17 chr12 140238614 140238792 -4043697 + AluJb SINE Alu 137 311 -1 180 182 114 0 chr12 140239012 140239056 -4043433 + L2 LINE L2 3217 3265 -7 253 306 233 16 chr12 140239117 140239375 -4043114 + L2 LINE L2 3000 3313 0 345 279 93 21 chr12 140239375 140239515 -4042974 + L1MC4 LINE L1 6554 6703 -1339 426 68 0 0 chr12 140239639 140239698 -4042791 - AluSp/q SINE Alu -12 301 243 2198 108 10 3 chr12 140239698 140239995 -4042494 + AluSx SINE Alu 6 304 -8 384 192 48 72 chr12 140240303 140240428 -4042061 + L1MB8 LINE L1 5879 6000 -178 516 144 10 10 chr12 140240432 140240529 -4041960 + L1MB8 LINE L1 6073 6169 -9 266 253 160 37 chr12 140240731 140240894 -4041595 + MLT1H LTR MaLR 83 264 -291 555 174 95 26 chr12 140240908 140241093 -4041396 + MLT1H LTR MaLR 420 549 0 332 260 119 45 chr12 140241204 140241381 -4041108 + MER3 DNA MER1_type 20 209 0 * 814 179 106 6 chr12 140241235 140241414 -4041075 - MER3 DNA MER1_type 0 209 13 2134 149 0 0 chr12 140241425 140241733 -4040756 - AluSx SINE Alu -4 308 1 262 102 85 34 chr12 140242236 140242295 -4040194 + MLT1L LTR MaLR 530 591 -24 888 110 8 0 chr12 140242356 140242483 -4040006 + AluSg/x SINE Alu 174 301 -9 181 0 0 65 chr12 140243210 140243241 -4039248 + (CAGCT)n Simple_repeat Simple_repeat 1 29 0 605 138 0 0 chr12 140244070 140244164 -4038325 + L1MA5 LINE L1 5866 5959 -341 253 182 30 0 chr12 140244162 140244228 -4038261 + L1MA5 LINE L1 6231 6298 -2 * 2154 133 0 3 chr12 140244231 140244540 -4037949 + AluSq SINE Alu 1 308 -5 1903 164 16 0 chr12 140244544 140244849 -4037640 + AluSx SINE Alu 2 311 -1 2198 121 0 10 chr12 140244890 140245187 -4037302 + AluSx SINE Alu 1 294 -18 2458 81 0 0 chr12 140245192 140245500 -4036989 + AluY SINE Alu 1 308 -3 545 290 143 18 chr12 140245512 140245784 -4036705 + L1M4 LINE L1 4877 5182 -964 1654 146 0 20 chr12 140247171 140247425 -4035064 - AluSx SINE Alu -63 249 1 261 0 0 0 chr12 140247604 140247633 -4034856 + (CA)n Simple_repeat Simple_repeat 2 30 0 856 185 14 14 chr12 140250664 140250994 -4031495 + CT-rich Low_complexity Low_complexity 1 330 0 397 237 41 10 chr12 140251467 140251610 -4030879 - MLT1J1 LTR MaLR -244 206 61 487 283 167 6 chr12 140251723 140251903 -4030586 - MIR SINE MIR -4 258 50 1485 201 89 20 chr12 140251906 140252310 -4030179 - L1MA9 LINE L1 -2 6310 5879 2155 96 26 35 chr12 140252316 140252628 -4029861 - AluSx SINE Alu -3 309 1 266 91 0 52 chr12 140253011 140253088 -4029401 + (TG)n Simple_repeat Simple_repeat 1 73 0 196 298 53 43 chr12 140253146 140253240 -4029249 + MIR SINE MIR 42 136 -126 498 261 69 30 chr12 140253729 140253932 -4028557 + MER46C DNA MER2_type 86 296 -42 317 298 149 6 chr12 140253976 140254144 -4028345 + MER113 DNA MER1_type? 233 424 -97 2223 116 0 3 chr12 140254578 140254888 -4027601 - AluSx SINE Alu -3 309 1 310 269 43 64 chr12 140255407 140255548 -4026941 + MER5A DNA MER1_type 49 186 -3 2264 115 0 0 chr12 140256000 140256305 -4026184 + AluSx SINE Alu 1 305 -7 423 286 35 35 chr12 140256530 140256729 -4025760 + Charlie8 DNA MER1_type 1 199 -2218 2226 125 0 19 chr12 140256902 140257221 -4025268 - AluSq SINE Alu 0 313 1 4032 99 13 0 chr12 140257739 140258286 -4024203 - MER41A LTR ERV1 0 554 1 730 289 109 25 chr12 140258338 140258622 -4023867 - MLT1E3 LTR MaLR -1 623 316 270 237 17 0 chr12 140258626 140258685 -4023804 - MER47A DNA MER2_type 0 366 307 1384 171 5 0 chr12 140258693 140258910 -4023579 + AluJb SINE Alu 86 303 -9 1432 199 18 0 chr12 140258910 140259196 -4023293 - MER47A DNA MER2_type -75 291 1 347 113 129 0 chr12 140259284 140259346 -4023143 - MLT1E LTR MaLR -446 147 78 919 270 69 60 chr12 140259534 140260071 -4022418 - MLT1H LTR MaLR -1 548 7 611 309 38 8 chr12 140260853 140261089 -4021400 - MIR SINE MIR -3 259 17 398 218 68 45 chr12 140261408 140261541 -4020948 - MIR SINE MIR -115 147 12 402 147 0 0 chr12 140261807 140261875 -4020614 + (TG)n Simple_repeat Simple_repeat 1 68 0 2016 99 0 119 chr12 140264334 140264679 -4017810 - AluSx SINE Alu -8 304 1 2085 190 43 54 chr12 140264693 140265075 -4017414 - L1PB4 LINE L1 -2 6154 5778 2205 96 4 0 chr12 140265075 140265355 -4017134 - AluSp SINE Alu -32 281 1 2085 190 43 54 chr12 140265355 140265488 -4017001 - L1PB4 LINE L1 -378 5778 5645 2058 136 7 7 chr12 140265624 140265932 -4016557 + AluSx SINE Alu 1 308 -4 335 209 0 11 chr12 140265933 140266024 -4016465 + (TA)n Simple_repeat Simple_repeat 1 90 0 234 133 0 0 chr12 140266034 140266079 -4016410 - LTR66 LTR ERVL -168 442 398 222 233 0 0 chr12 140266079 140266122 -4016367 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 278 250 23 23 chr12 140266125 140266213 -4016276 + L1MC4 LINE L1 6616 6703 -1339 203 268 16 16 chr12 140266222 140266349 -4016140 + (TATATG)n Simple_repeat Simple_repeat 2 128 0 229 301 0 15 chr12 140266885 140266966 -4015523 + CT-rich Low_complexity Low_complexity 1 134 0 329 263 136 0 chr12 140267097 140267215 -4015274 + MER5B DNA MER1_type 45 178 0 1910 141 0 7 chr12 140267395 140267665 -4014824 + AluJo SINE Alu 14 281 -31 261 0 0 0 chr12 140267672 140267701 -4014788 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2146 138 7 0 chr12 140267762 140268066 -4014423 - AluSx SINE Alu -6 306 1 1120 228 178 21 chr12 140268431 140268857 -4013632 - MLT1J LTR MaLR -8 503 11 2061 153 0 10 chr12 140269224 140269537 -4012952 - AluSx SINE Alu -2 310 1 204 209 75 15 chr12 140270021 140270088 -4012401 - L2 LINE L2 0 3313 3243 2256 97 7 0 chr12 140270144 140270433 -4012056 - AluSg SINE Alu -5 305 15 3061 123 44 6 chr12 140271072 140271550 -4010939 - MER1A DNA MER1_type 0 529 34 264 222 111 0 chr12 140271845 140271908 -4010581 - L2 LINE L2 -11 3261 3192 1329 231 74 41 chr12 140272447 140272624 -4009865 + MER92B LTR ERV1 81 251 -385 2459 73 0 7 chr12 140272624 140272925 -4009564 + AluY SINE Alu 1 299 -12 1329 231 74 41 chr12 140272925 140273285 -4009204 + MER92B LTR ERV1 251 636 0 1759 128 0 4 chr12 140273534 140273785 -4008704 - AluSx SINE Alu -5 307 58 362 155 60 0 chr12 140274140 140274224 -4008265 - L1MA9 LINE L1 0 6312 6224 3145 82 14 5 chr12 140274255 140274695 -4007794 - L1PA11 LINE L1 0 6174 5731 2099 98 7 21 chr12 140274994 140275325 -4007164 + AluSx SINE Alu 1 327 0 21 0 0 0 chr12 140276033 140276054 -4006435 + AT_rich Low_complexity Low_complexity 1 21 0 2421 78 0 0 chr12 140276329 140276624 -4005865 - AluY SINE Alu -16 295 1 458 100 14 0 chr12 140276627 140276697 -4005792 - MER39B LTR ERV1 -387 266 196 1732 78 0 5 chr12 140276697 140276916 -4005573 + AluY SINE Alu 88 305 -6 209 282 199 23 chr12 140277935 140278066 -4004423 + L2 LINE L2 2589 2742 -572 23 54 0 0 chr12 140278228 140278265 -4004224 + AT_rich Low_complexity Low_complexity 1 37 0 622 155 0 9 chr12 140278270 140278386 -4004103 - L1MA7 LINE L1 -2 6289 6175 301 269 90 0 chr12 140278392 140278470 -4004019 - MER2 DNA MER2_type 0 345 261 2466 73 3 13 chr12 140278487 140278803 -4003686 + AluSq SINE Alu 1 313 0 232 260 26 26 chr12 140278837 140278914 -4003575 + L2 LINE L2 3168 3244 -28 289 307 73 20 chr12 140279404 140279554 -4002935 - MLT1K LTR MaLR -36 552 395 566 228 0 0 chr12 140280099 140280222 -4002267 - MER33 DNA MER1_type -13 311 189 2359 101 3 0 chr12 140280237 140280544 -4001945 - AluSx SINE Alu -4 308 1 1833 151 7 10 chr12 140280547 140280845 -4001644 - AluJo SINE Alu -15 297 1 252 235 37 22 chr12 140280865 140281001 -4001488 + (TA)n Simple_repeat Simple_repeat 1 138 0 267 247 27 0 chr12 140281011 140281084 -4001405 - MER33 DNA MER1_type -223 101 27 1594 108 149 0 chr12 140281314 140281555 -4000934 - AluSx SINE Alu -13 299 23 356 100 0 0 chr12 140281556 140281606 -4000883 + Alu SINE Alu 245 294 -6 2083 137 3 0 chr12 140282084 140282384 -4000105 + AluSx SINE Alu 1 301 -11 2373 49 28 14 chr12 140283299 140283618 -3998871 - AluSg SINE Alu 0 310 1 192 158 0 0 chr12 140284112 140284150 -3998339 + (CA)n Simple_repeat Simple_repeat 2 39 0 270 143 0 0 chr12 140284218 140284267 -3998222 + (TC)n Simple_repeat Simple_repeat 2 50 0 1805 172 3 13 chr12 140284268 140284570 -3997919 - AluJb SINE Alu -13 299 1 810 303 41 26 chr12 140284648 140285037 -3997452 - L1MC4a LINE L1 -1902 5906 5512 557 190 17 22 chr12 140285204 140285383 -3997106 + CT-rich Low_complexity Low_complexity 1 178 0 212 196 0 18 chr12 140285376 140285432 -3997057 + C-rich Low_complexity Low_complexity 4 58 0 * 1042 60 27 0 chr12 140285434 140285583 -3996906 + (TTTC)n Simple_repeat Simple_repeat 1 153 0 2097 110 0 0 chr12 140285584 140285856 -3996633 - AluSx SINE Alu -40 272 1 1854 178 3 7 chr12 140285856 140286158 -3996331 - AluJb SINE Alu -10 302 1 326 270 26 46 chr12 140286162 140286314 -3996175 - L1MC4a LINE L1 -818 5328 5180 333 0 0 0 chr12 140286429 140286466 -3996023 + (TG)n Simple_repeat Simple_repeat 2 38 0 2126 123 0 13 chr12 140286889 140287210 -3995279 + AluSq SINE Alu 1 313 0 1634 163 3 33 chr12 140287670 140287977 -3994512 - AluJb SINE Alu -1 311 14 881 202 67 125 chr12 140288011 140288506 -3993983 - LTR37B LTR ERV1 -2 466 1 1764 229 109 15 chr12 140289088 140289547 -3992942 - MLT1F LTR MaLR 0 542 41 1820 159 3 26 chr12 140289980 140290289 -3992200 - AluJo SINE Alu -10 302 1 1337 87 33 0 chr12 140290519 140290703 -3991786 - L1PA11 LINE L1 0 6174 5985 771 42 0 0 chr12 140290745 140290840 -3991649 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 1743 151 0 18 chr12 140290850 140291135 -3991354 - AluSx SINE Alu -32 280 1 393 278 166 32 chr12 140291253 140291530 -3990959 - L1MC/D LINE L1 -1986 5822 5509 271 227 80 13 chr12 140292133 140292208 -3990281 - L1ME4a LINE L1 -43 6078 5999 2566 53 0 0 chr12 140292317 140292619 -3989870 + AluY SINE Alu 1 302 -9 2132 135 3 10 chr12 140292626 140292938 -3989551 + AluSx SINE Alu 3 312 0 488 111 34 0 chr12 140292938 140293055 -3989434 + (TA)n Simple_repeat Simple_repeat 2 122 0 498 256 77 19 chr12 140293282 140293438 -3989051 - L1ME4a LINE L1 -383 5738 5574 2256 105 7 10 chr12 140293650 140293954 -3988535 - AluSq SINE Alu -10 303 1 2142 88 10 10 chr12 140294270 140294597 -3987892 - AluSc SINE Alu 0 327 1 985 167 23 37 chr12 140294683 140294898 -3987591 + AluSg SINE Alu 1 212 -98 1377 183 48 14 chr12 140295038 140295327 -3987162 - Charlie1a DNA MER1_type -537 918 620 956 178 0 0 chr12 140295338 140295501 -3986988 + FRAM SINE Alu 11 173 -3 2399 81 0 0 chr12 140295505 140295800 -3986689 + AluSg SINE Alu 1 295 -15 979 107 23 0 chr12 140295820 140295951 -3986538 + AluSq/x SINE Alu 1 134 -178 898 241 130 7 chr12 140295955 140296254 -3986235 - Charlie1a DNA MER1_type -1119 336 1 626 252 77 0 chr12 140296295 140296569 -3985920 + AluSq SINE Alu 3 297 -6 844 165 0 0 chr12 140296773 140296906 -3985583 - FLAM_C SINE Alu 0 133 1 435 156 0 0 chr12 140296906 140296983 -3985506 + L1MA8 LINE L1 6190 6266 -25 2093 121 3 3 chr12 140297084 140297373 -3985116 - AluSx SINE Alu -23 289 1 2890 155 52 10 chr12 140297374 140297897 -3984592 - L1MA8 LINE L1 -160 6131 5587 2498 69 3 0 chr12 140298142 140298445 -3984044 + AluY SINE Alu 1 304 -7 2566 184 29 18 chr12 140298447 140299002 -3983487 + L1MB4 LINE L1 5579 6139 -41 256 200 17 0 chr12 140299110 140299170 -3983319 + (TTA)n Simple_repeat Simple_repeat 1 61 0 2494 73 0 0 chr12 140299538 140299838 -3982651 + AluSg SINE Alu 1 300 -10 3697 129 39 58 chr12 140300238 140300761 -3981728 + L1MA8 LINE L1 5588 6119 -172 2129 134 3 0 chr12 140300761 140301060 -3981429 + AluSx SINE Alu 1 300 -12 3697 129 39 58 chr12 140301060 140301150 -3981339 + L1MA8 LINE L1 6119 6189 -102 844 165 0 0 chr12 140301150 140301283 -3981206 - FLAM_C SINE Alu 0 133 1 3697 129 39 58 chr12 140301283 140301360 -3981129 + L1MA8 LINE L1 6189 6266 -25 389 142 5 19 chr12 140301413 140301461 -3981028 - L1MA8 LINE L1 -112 6191 6144 2248 107 0 3 chr12 140301461 140301751 -3980738 - AluSx SINE Alu -23 289 1 389 142 5 19 chr12 140301751 140301803 -3980686 - L1MA8 LINE L1 -159 6144 6081 2257 119 26 66 chr12 140302126 140302504 -3979985 + THE1B LTR MaLR 2 364 0 516 141 0 43 chr12 140302524 140302616 -3979873 - MLT1D LTR MaLR 0 505 418 926 213 81 33 chr12 140302683 140303040 -3979449 - MLT1D LTR MaLR -79 426 1 2015 136 0 17 chr12 140303244 140303546 -3978943 - AluSx SINE Alu -15 297 1 261 0 0 0 chr12 140303723 140303752 -3978737 + (CA)n Simple_repeat Simple_repeat 2 30 0 788 187 53 7 chr12 140305225 140305375 -3977114 + FRAM SINE Alu 1 156 -20 1426 210 203 30 chr12 140305860 140305995 -3976494 + LTR54 LTR ERV1 2 112 -398 2024 147 3 0 chr12 140305995 140306302 -3976187 - AluSx SINE Alu -4 308 1 1426 210 203 30 chr12 140306302 140306600 -3975889 + LTR54 LTR ERV1 112 510 0 1483 135 0 5 chr12 140306730 140306945 -3975544 + AluJb SINE Alu 1 214 -98 2196 120 0 0 chr12 140306945 140307236 -3975253 + AluSx SINE Alu 1 291 -21 461 129 26 69 chr12 140307256 140307372 -3975117 + AluSg/x SINE Alu 199 309 0 1661 127 5 80 chr12 140308022 140308395 -3974094 - MER4A LTR ERV1 0 664 261 576 104 31 10 chr12 140308395 140308491 -3973998 - MER4A LTR ERV1 -566 98 1 192 125 0 0 chr12 140308517 140308549 -3973940 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 54 0 0 chr12 140308988 140309025 -3973464 + AT_rich Low_complexity Low_complexity 1 37 0 2224 124 3 0 chr12 140309192 140309499 -3972990 + AluSx SINE Alu 1 308 -4 268 247 13 0 chr12 140309588 140309665 -3972824 - MER116 DNA Mariner -1 79 2 2026 136 3 0 chr12 140309814 140310109 -3972380 - AluSx SINE Alu -12 300 5 1632 200 44 125 chr12 140310613 140310790 -3971699 - L1MC4a LINE L1 -665 7143 6953 2214 117 0 19 chr12 140310790 140311097 -3971392 + AluSx SINE Alu 1 301 -11 1632 200 44 125 chr12 140311097 140311513 -3970976 - L1MC4a LINE L1 -855 6953 6598 1470 243 117 27 chr12 140311577 140311687 -3970802 - L2 LINE L2 -971 2343 2244 2208 100 3 10 chr12 140311687 140311987 -3970502 - AluSx SINE Alu -14 298 1 1470 243 117 27 chr12 140311987 140312464 -3970025 - L2 LINE L2 -1070 2244 1703 1335 107 0 11 chr12 140312804 140312991 -3969498 - AluSc SINE Alu -7 302 118 392 294 93 43 chr12 140313076 140313519 -3968970 - L1MC4a LINE L1 -2089 5719 5255 2555 53 3 0 chr12 140313895 140314195 -3968294 - AluY SINE Alu -10 301 1 354 252 84 21 chr12 140314216 140314359 -3968130 - L1MC4a LINE L1 -1303 4843 4692 260 151 0 19 chr12 140314360 140314413 -3968076 + CT-rich Low_complexity Low_complexity 3 54 0 1760 159 0 14 chr12 140314428 140314705 -3967784 - AluJb SINE Alu -39 273 1 253 321 31 20 chr12 140314709 140314905 -3967584 - L1MC4a LINE L1 -1446 4700 4503 2314 112 0 7 chr12 140315775 140316080 -3966409 - AluSx SINE Alu -9 303 1 2252 124 0 0 chr12 140316865 140317164 -3965325 - AluSx SINE Alu -13 299 1 1068 220 118 13 chr12 140317209 140317513 -3964976 + Charlie1a DNA MER1_type 1 336 -1119 979 107 23 0 chr12 140317517 140317648 -3964841 - AluSq/x SINE Alu -179 134 1 2399 81 0 0 chr12 140317668 140317963 -3964526 - AluSg SINE Alu -15 295 1 956 178 0 0 chr12 140317967 140318130 -3964359 - FRAM SINE Alu -3 173 11 2457 197 60 9 chr12 140318141 140318430 -3964059 + Charlie1a DNA MER1_type 620 893 -1868 2446 82 3 9 chr12 140318430 140318745 -3963744 + AluSp SINE Alu 1 313 0 2457 197 60 9 chr12 140318745 140318987 -3963502 + Charlie1a DNA MER1_type 893 1178 -277 1964 103 82 4 chr12 140318991 140319272 -3963217 + AluSx SINE Alu 2 304 -8 2257 91 7 19 chr12 140319947 140320256 -3962233 - AluSg SINE Alu -5 305 1 207 114 0 0 chr12 140320383 140320418 -3962071 + (CA)n Simple_repeat Simple_repeat 2 36 0 2277 110 7 7 chr12 140320852 140321162 -3961327 - AluSx SINE Alu -2 310 1 1121 82 0 0 chr12 140321162 140321297 -3961192 - AluSq/x SINE Alu -178 135 1 541 154 36 27 chr12 140321418 140321528 -3960961 - Charlie5 DNA MER1_type -138 2474 2364 1605 155 10 44 chr12 140322057 140322354 -3960135 - AluJo SINE Alu -11 301 15 228 67 0 0 chr12 140322939 140322969 -3959520 + (T)n Simple_repeat Simple_repeat 1 30 0 2522 70 0 0 chr12 140323533 140323834 -3958655 - AluY SINE Alu -10 301 1 460 115 13 13 chr12 140324321 140324399 -3958090 - AluSg/x SINE Alu -21 291 214 295 100 0 0 chr12 140324399 140324439 -3958050 - AluJo SINE Alu -262 40 1 1049 99 11 17 chr12 140324549 140324730 -3957759 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 237 178 0 0 chr12 140324736 140324781 -3957708 + CT-rich Low_complexity Low_complexity 2 46 0 2608 18 0 0 chr12 140324898 140325215 -3957274 + AluY SINE Alu 1 317 0 222 37 0 0 chr12 140325441 140325468 -3957021 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 189 0 0 0 chr12 140326493 140326514 -3955975 + (T)n Simple_repeat Simple_repeat 1 21 0 2212 122 0 0 chr12 140327155 140327458 -3955031 - AluSx SINE Alu -9 303 1 293 246 16 16 chr12 140328756 140328878 -3953611 + L1MC5 LINE L1 7659 7780 -181 1386 149 0 28 chr12 140328892 140329140 -3953349 - AluJb SINE Alu -13 299 59 2025 117 0 3 chr12 140329449 140329749 -3952740 - AluSx SINE Alu -13 299 1 238 256 142 40 chr12 140329993 140330169 -3952320 + MIR SINE MIR 20 213 -49 2106 92 0 0 chr12 140330766 140331082 -3951407 + AluSx SINE Alu 1 316 0 396 260 34 90 chr12 140331521 140331596 -3950893 - L1ME4a LINE L1 0 6121 6043 2056 119 7 0 chr12 140331596 140331891 -3950598 - AluSx SINE Alu -15 297 1 396 260 34 90 chr12 140331891 140331992 -3950497 - L1ME4a LINE L1 -78 6043 5955 2954 243 58 22 chr12 140332083 140333570 -3948919 - L1ME2 LINE L1 0 6164 4617 1404 134 0 9 chr12 140333583 140333806 -3948683 - AluSx SINE Alu -91 221 1 5988 69 19 9 chr12 140333912 140334728 -3947761 + L1PA10 LINE L1 5354 6177 0 546 67 0 0 chr12 140336172 140336247 -3946242 + (TC)n Simple_repeat Simple_repeat 2 76 0 2060 120 0 22 chr12 140336495 140336811 -3945678 + AluSq SINE Alu 3 311 -2 518 218 39 120 chr12 140337594 140337828 -3944661 - MER112 DNA MER1_type -42 218 4 507 217 46 171 chr12 140338282 140338391 -3944098 - L1MC4 LINE L1 -575 7467 7346 279 0 0 0 chr12 140338391 140338422 -3944067 + (TG)n Simple_repeat Simple_repeat 2 32 0 507 217 46 171 chr12 140338422 140338616 -3943873 - L1MC4 LINE L1 -696 7346 7202 2052 131 0 0 chr12 140338869 140339175 -3943314 + AluSx SINE Alu 1 306 -6 2060 109 10 3 chr12 140339744 140340048 -3942441 - AluSx SINE Alu -6 306 1 1723 127 4 4 chr12 140340373 140340641 -3941848 + AluSx SINE Alu 1 268 -44 1641 242 17 30 chr12 140340641 140341116 -3941373 + L1ME2 LINE L1 5696 6164 0 1654 174 3 0 chr12 140344159 140344452 -3938037 + AluJo SINE Alu 1 294 -18 1039 275 78 27 chr12 140345145 140345626 -3936863 + LTR1B LTR ERV1 33 603 -332 1677 227 102 23 chr12 140345727 140345865 -3936624 + MLT1F LTR MaLR 11 137 -405 185 0 40 0 chr12 140345865 140345890 -3936599 + (TC)n Simple_repeat Simple_repeat 2 27 0 1677 227 102 23 chr12 140345890 140346222 -3936267 + MLT1F LTR MaLR 137 518 -24 1153 218 203 0 chr12 140346229 140346545 -3935944 - MLT1F1 LTR MaLR 0 567 188 898 210 6 7 chr12 140346575 140346771 -3935718 - MLT1B LTR MaLR -11 374 169 1677 170 0 29 chr12 140346780 140347091 -3935398 - AluJb SINE Alu -10 302 1 677 219 0 0 chr12 140347109 140347232 -3935257 - FLAM_C SINE Alu -20 123 1 727 185 73 7 chr12 140347233 140347384 -3935105 - MLT1B LTR MaLR -219 171 11 612 271 11 33 chr12 140347399 140347580 -3934909 - MLT1E LTR MaLR -364 178 2 921 258 58 35 chr12 140347816 140348211 -3934278 - L1MC4a LINE L1 -1823 5985 5582 1466 111 11 82 chr12 140348290 140348452 -3934037 + AluSx SINE Alu 53 188 -124 2068 135 0 0 chr12 140348452 140348763 -3933726 + AluSx SINE Alu 1 311 -1 1466 111 11 82 chr12 140348763 140348879 -3933610 + AluSx SINE Alu 188 311 -1 1672 127 5 80 chr12 140349529 140349902 -3932587 - MER4A LTR ERV1 0 664 261 578 104 31 10 chr12 140349902 140349998 -3932491 - MER4A LTR ERV1 -566 98 1 192 125 0 0 chr12 140350024 140350056 -3932433 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 54 0 0 chr12 140350495 140350532 -3931957 + AT_rich Low_complexity Low_complexity 1 37 0 2099 124 3 0 chr12 140350699 140351006 -3931483 + AluSx SINE Alu 1 308 -4 263 247 13 0 chr12 140351095 140351172 -3931317 - MER116 DNA Mariner -1 79 2 1909 136 3 0 chr12 140351321 140351616 -3930873 - AluSx SINE Alu -12 300 5 2290 75 0 0 chr12 140352288 140352583 -3929906 - AluY SINE Alu -16 295 1 2073 118 0 6 chr12 140352762 140353076 -3929413 + AluSx SINE Alu 1 312 0 2157 117 0 3 chr12 140353661 140353970 -3928519 - AluSq SINE Alu -5 308 1 1108 220 116 9 chr12 140353999 140354326 -3928163 + MLT1A1 LTR MaLR 1 362 -3 1993 107 3 47 chr12 140354728 140355046 -3927443 + AluSx SINE Alu 1 304 -8 563 248 148 30 chr12 140355240 140355586 -3926903 - MER113 DNA MER1_type? -106 415 6 312 223 31 92 chr12 140355912 140356042 -3926447 - Charlie8 DNA MER1_type -1867 550 429 2046 99 0 20 chr12 140356047 140356349 -3926140 - AluSc SINE Alu -13 296 1 2300 75 3 3 chr12 140356351 140356656 -3925833 - AluSx SINE Alu -7 305 1 300 53 0 0 chr12 140356952 140356990 -3925499 + (CA)n Simple_repeat Simple_repeat 1 38 0 319 243 45 55 chr12 140358201 140358363 -3924126 + MER63 DNA MER1_type 676 1682 -6 282 246 269 0 chr12 140358667 140358797 -3923692 + L2 LINE L2 2928 3092 -221 2167 92 34 0 chr12 140359248 140359543 -3922946 - AluSx SINE Alu -7 305 1 238 208 56 80 chr12 140359680 140359805 -3922684 - LTR67 LTR ERVL -24 533 412 2028 111 27 0 chr12 140360314 140360611 -3921878 + AluSx SINE Alu 1 305 -7 702 227 0 0 chr12 140360673 140360814 -3921675 - FLAM_A SINE Alu -1 141 1 592 250 18 37 chr12 140361030 140361194 -3921295 + MIR SINE MIR 92 252 -10 2451 50 0 0 chr12 140361206 140361503 -3920986 - AluY SINE Alu -14 297 1 2212 120 68 3 chr12 140362656 140363007 -3919482 + THE1C LTR MaLR 1 374 -1 693 266 93 0 chr12 140363117 140363354 -3919135 + MIR SINE MIR 2 260 -2 1184 139 0 106 chr12 140364329 140364566 -3917923 + AluSx SINE Alu 1 212 -100 240 91 0 0 chr12 140364566 140364599 -3917890 + Alu SINE Alu 78 110 -23 2094 139 96 15 chr12 140364599 140364995 -3917494 - MSTA LTR MaLR 0 428 1 209 180 20 0 chr12 140365008 140365058 -3917431 + (TA)n Simple_repeat Simple_repeat 2 52 0 199 171 49 0 chr12 140365284 140365325 -3917164 - MIR SINE MIR -9 253 211 319 293 132 12 chr12 140365398 140365565 -3916924 - MIR SINE MIR -48 214 28 1633 208 14 64 chr12 140365844 140366281 -3916208 - L1MB7 LINE L1 -20 6164 5750 1828 134 0 26 chr12 140366613 140366918 -3915571 - AluSg SINE Alu -3 307 11 216 0 0 0 chr12 140366955 140366979 -3915510 + (T)n Simple_repeat Simple_repeat 1 24 0 2080 94 10 7 chr12 140367789 140368096 -3914393 - AluSc SINE Alu -1 308 1 213 39 0 0 chr12 140369844 140369870 -3912619 + (TA)n Simple_repeat Simple_repeat 1 26 0 1849 69 6 1 chr12 140369870 140370112 -3912377 - L1PA6 LINE L1 -23 6131 5889 205 289 22 33 chr12 140370500 140370590 -3911899 - MIR SINE MIR -33 229 141 365 274 73 20 chr12 140370768 140370972 -3911517 - MLT1J LTR MaLR -39 472 258 2079 89 45 0 chr12 140371390 140371682 -3910807 - AluY SINE Alu -6 305 1 2373 90 0 0 chr12 140371686 140371998 -3910491 - AluSx SINE Alu 0 312 1 501 229 0 0 chr12 140374794 140374925 -3907564 + (CA)n Simple_repeat Simple_repeat 1 131 0 195 146 0 0 chr12 140375100 140375141 -3907348 + (TG)n Simple_repeat Simple_repeat 1 41 0 301 291 17 51 chr12 140375585 140375702 -3906787 - MER5B DNA MER1_type -2 176 64 1581 161 64 47 chr12 140375856 140376170 -3906319 + L1MA8 LINE L1 5920 6235 -56 2199 111 0 0 chr12 140376170 140376476 -3906013 + AluSx SINE Alu 1 306 -6 1581 161 64 47 chr12 140376476 140376524 -3905965 + L1MA8 LINE L1 6235 6281 -10 199 321 147 9 chr12 140377090 140377199 -3905290 - L2 LINE L2 -6 3307 3184 584 161 96 27 chr12 140377344 140377481 -3905008 + MLT1B LTR MaLR 1 123 -267 2218 99 6 29 chr12 140377511 140377824 -3904665 - AluSp SINE Alu -7 306 1 2137 123 7 10 chr12 140377824 140378131 -3904358 - AluSx SINE Alu -6 306 1 1044 171 24 36 chr12 140378132 140378383 -3904106 - L1M4 LINE L1 -745 5401 5154 731 210 0 0 chr12 140378383 140378521 -3903968 - FLAM_C SINE Alu 0 143 6 853 221 9 9 chr12 140378528 140378745 -3903744 - L1M4 LINE L1 -981 5165 4949 2352 106 0 0 chr12 140378793 140379095 -3903394 - AluSx SINE Alu -10 302 1 2463 70 6 29 chr12 140379161 140379477 -3903012 - AluY SINE Alu 0 311 3 1592 187 0 14 chr12 140379723 140380001 -3902488 + AluJo SINE Alu 7 280 -32 367 346 25 31 chr12 140380043 140380205 -3902284 - MIR SINE MIR -71 191 31 272 311 22 6 chr12 140380227 140380374 -3902115 - L1MD3 LINE L1 -2 8040 7892 948 279 81 79 chr12 140380586 140380946 -3901543 - L1MC4 LINE L1 -371 7671 7313 1928 151 5 69 chr12 140380946 140381015 -3901474 - MER47A DNA MER2_type -1957 366 294 1862 68 0 0 chr12 140381015 140381236 -3901253 + AluY SINE Alu 89 309 -2 1928 151 5 69 chr12 140381236 140381557 -3900932 - MER47A DNA MER2_type -2029 294 1 948 279 81 79 chr12 140381557 140381959 -3900530 - L1MC4 LINE L1 -729 7313 6907 191 409 9 0 chr12 140382872 140382982 -3899507 + MIR SINE MIR 33 143 -65 358 311 106 6 chr12 140383323 140383484 -3899005 + MIR SINE MIR 85 261 -1 1873 135 12 61 chr12 140383500 140383827 -3898662 + AluSx SINE Alu 1 311 -1 1274 84 0 0 chr12 140384014 140384222 -3898267 + AluY SINE Alu 128 335 0 892 306 66 62 chr12 140384288 140384500 -3897989 + MLT1K LTR MaLR 4 214 -374 2404 103 0 0 chr12 140384500 140384811 -3897678 + AluSx SINE Alu 1 311 -1 892 306 66 62 chr12 140384811 140385030 -3897459 + MLT1K LTR MaLR 214 440 -148 1678 133 56 15 chr12 140385030 140385300 -3897189 + AluSx SINE Alu 27 307 -5 892 306 66 62 chr12 140385300 140385445 -3897044 + MLT1K LTR MaLR 440 583 -5 1793 179 5 90 chr12 140385449 140385533 -3896956 + L1MC3 LINE L1 4975 5065 -1153 2406 83 7 0 chr12 140385533 140385833 -3896656 + AluSp SINE Alu 1 302 -11 2177 124 10 0 chr12 140385842 140386140 -3896349 + AluSx SINE Alu 1 301 -11 1793 179 5 90 chr12 140386140 140386542 -3895947 + L1MC3 LINE L1 5073 5508 -710 2113 139 0 0 chr12 140386542 140386837 -3895652 + AluSx SINE Alu 1 295 -17 1793 179 5 90 chr12 140386837 140386888 -3895601 + L1MC3 LINE L1 5508 5562 -656 663 79 0 0 chr12 140386888 140386977 -3895512 + AluSg1 SINE Alu 7 95 -214 3575 107 0 4 chr12 140386978 140387491 -3894998 + MER9 LTR ERVK 1 511 0 1540 98 0 24 chr12 140387491 140387696 -3894793 + AluSg1 SINE Alu 91 290 -20 1793 179 5 90 chr12 140387696 140388248 -3894241 + L1MC3 LINE L1 4877 5475 -743 * 4258 101 3 5 chr12 140387699 140388326 -3894163 + L1MA3 LINE L1 5468 6093 -212 994 168 0 35 chr12 140388326 140388499 -3893990 + AluSg/x SINE Alu 146 312 0 2469 67 3 13 chr12 140388502 140388814 -3893675 + AluY SINE Alu 1 309 -2 2139 116 0 0 chr12 140388855 140389168 -3893321 + AluSx SINE Alu 1 313 0 1268 125 56 0 chr12 140389174 140389406 -3893083 + L1MA3 LINE L1 6061 6305 0 668 299 115 25 chr12 140389406 140389925 -3892564 + L1ME4a LINE L1 5295 5871 -250 2070 250 29 15 chr12 140389925 140390540 -3891949 - MLT1E3 LTR MaLR 0 624 1 668 299 115 25 chr12 140390540 140390578 -3891911 + L1ME4a LINE L1 5871 5904 -217 305 347 62 11 chr12 140390929 140391105 -3891384 + MIR SINE MIR 76 260 -2 2033 123 20 17 chr12 140391186 140391479 -3891010 - AluSp SINE Alu -19 294 1 23 68 0 0 chr12 140391529 140391573 -3890916 + AT_rich Low_complexity Low_complexity 1 44 0 369 156 31 0 chr12 140392018 140392114 -3890375 + CT-rich Low_complexity Low_complexity 2 100 0 776 128 0 7 chr12 140392134 140392282 -3890207 + (TC)n Simple_repeat Simple_repeat 2 148 0 198 0 0 0 chr12 140392282 140392304 -3890185 + (CA)n Simple_repeat Simple_repeat 1 22 0 2185 114 0 3 chr12 140392997 140393286 -3889203 + AluSx SINE Alu 1 288 -24 208 217 139 61 chr12 140393349 140393464 -3889025 - L2 LINE L2 -8 3264 3141 1929 164 3 13 chr12 140393598 140393924 -3888565 + AluSx SINE Alu 1 323 0 750 244 94 103 chr12 140394025 140394483 -3888006 - MLT1A1 LTR MaLR -3 362 1 388 253 39 108 chr12 140394497 140394610 -3887879 + MLT1C LTR MaLR 81 200 -267 2235 137 0 0 chr12 140394610 140394916 -3887573 + AluSx SINE Alu 1 306 -6 388 253 39 108 chr12 140394916 140395010 -3887479 + MLT1C LTR MaLR 200 249 -218 688 161 0 29 chr12 140395010 140395147 -3887342 + FLAM_C SINE Alu 1 133 0 388 253 39 108 chr12 140395147 140395279 -3887210 + MLT1C LTR MaLR 249 389 -78 1882 100 7 100 chr12 140397870 140398003 -3884486 + AluSc SINE Alu 1 145 -168 2277 112 0 0 chr12 140398003 140398306 -3884183 + AluY SINE Alu 1 303 -8 1882 100 7 100 chr12 140398306 140398514 -3883975 + AluSc SINE Alu 145 313 0 1784 136 111 0 chr12 140398528 140398807 -3883682 + AluSg SINE Alu 1 310 0 2239 133 42 5 chr12 140398808 140399191 -3883298 - MSTA LTR MaLR -31 397 1 1340 215 60 98 chr12 140399211 140399346 -3883143 + MLT2B1 LTR ERVL 69 208 -312 1920 126 10 17 chr12 140399346 140399640 -3882849 + AluSx SINE Alu 1 292 -20 1340 215 60 98 chr12 140399640 140399974 -3882515 + MLT2B1 LTR ERVL 208 520 0 314 307 53 53 chr12 140400000 140400150 -3882339 - MER20B DNA MER1_type -610 173 24 211 135 0 39 chr12 140400285 140400337 -3882152 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 385 235 0 88 chr12 140400338 140400447 -3882042 - L1M4 LINE L1 -2162 3984 3888 4007 87 5 2 chr12 140400447 140400999 -3881490 - MER41A LTR ERV1 0 554 1 385 235 0 88 chr12 140400999 140401025 -3881464 - L1M4 LINE L1 -2258 3888 3861 674 257 94 94 chr12 140401030 140401485 -3881004 + MLT1J LTR MaLR 1 455 -56 421 332 70 5 chr12 140401563 140401699 -3880790 - Charlie8 DNA MER1_type -102 239 83 1717 184 7 20 chr12 140401699 140402003 -3880486 + AluJo SINE Alu 1 300 -12 421 332 70 5 chr12 140402003 140402080 -3880409 - Charlie8 DNA MER1_type -258 83 12 1909 164 3 0 chr12 140402303 140402596 -3879893 - AluSx SINE Alu -16 296 3 204 157 0 39 chr12 140404265 140404316 -3878173 + (CGG)n Simple_repeat Simple_repeat 1 49 0 28 61 0 0 chr12 140404409 140404458 -3878031 + GC_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr12 140404970 140405002 -3877487 + GC_rich Low_complexity Low_complexity 1 32 0 396 0 0 0 chr12 140405122 140405166 -3877323 + (TG)n Simple_repeat Simple_repeat 2 45 0 2344 89 3 0 chr12 140405232 140405524 -3876965 - AluSx SINE Alu -19 293 1 889 98 0 63 chr12 140405837 140405980 -3876509 + AluSg/x SINE Alu 175 308 -2 1722 150 21 17 chr12 140406017 140406304 -3876185 + AluJb SINE Alu 11 298 -14 3750 95 12 20 chr12 140406305 140406473 -3876016 - MER41A LTR ERV1 0 554 386 2205 118 7 0 chr12 140406473 140406778 -3875711 - AluSq SINE Alu -6 307 1 3750 95 12 20 chr12 140406778 140407167 -3875322 - MER41A LTR ERV1 -168 386 1 367 279 202 0 chr12 140407172 140407430 -3875059 - L2 LINE L2 -194 3119 2810 1248 137 14 5 chr12 140407506 140407717 -3874772 + AluSg/x SINE Alu 94 306 -3 268 264 136 18 chr12 140408735 140408845 -3873644 + MIR SINE MIR 111 233 -29 4812 102 21 39 chr12 140408845 140409117 -3873372 + MER4E LTR ERV1 1 276 -503 2238 112 3 0 chr12 140409117 140409413 -3873076 + AluSx SINE Alu 2 298 -14 4812 102 21 39 chr12 140409413 140409933 -3872556 + MER4E LTR ERV1 276 779 0 498 258 115 0 chr12 140410146 140410328 -3872161 + MER20 DNA MER1_type 16 218 -1 2422 76 0 0 chr12 140410910 140411199 -3871290 + AluSx SINE Alu 6 294 -18 526 281 18 35 chr12 140411868 140412096 -3870393 + MER58A DNA MER1_type 1 224 0 2335 120 0 0 chr12 140412773 140413074 -3869415 + AluSx SINE Alu 1 301 -11 1739 158 46 14 chr12 140413101 140413386 -3869103 + AluJb SINE Alu 2 295 -17 247 250 115 10 chr12 140413398 140413494 -3868995 - L2 LINE L2 -5 3308 3203 1712 219 18 13 chr12 140413709 140414098 -3868391 - MER39B LTR ERV1 -1 652 262 2123 109 0 32 chr12 140414098 140414409 -3868080 - AluSp SINE Alu -12 301 1 2137 123 7 10 chr12 140414409 140414716 -3867773 - AluSx SINE Alu -5 307 1 1044 171 24 36 chr12 140414717 140414968 -3867521 - L1M4 LINE L1 -745 5401 5154 731 210 0 0 chr12 140414968 140415106 -3867383 - FLAM_C SINE Alu 0 143 6 853 221 9 9 chr12 140415113 140415330 -3867159 - L1M4 LINE L1 -981 5165 4949 2352 106 0 0 chr12 140415378 140415680 -3866809 - AluSx SINE Alu -10 302 1 2463 70 6 29 chr12 140415746 140416062 -3866427 - AluY SINE Alu 0 311 3 1592 187 0 14 chr12 140416308 140416586 -3865903 + AluJo SINE Alu 7 280 -32 367 346 25 31 chr12 140416628 140416790 -3865699 - MIR SINE MIR -71 191 31 272 311 22 6 chr12 140416812 140416959 -3865530 - L1MD3 LINE L1 -2 8040 7892 948 279 81 79 chr12 140417171 140417531 -3864958 - L1MC4 LINE L1 -371 7671 7313 1928 151 5 69 chr12 140417531 140417600 -3864889 - MER47A DNA MER2_type -1957 366 294 1862 68 0 0 chr12 140417600 140417821 -3864668 + AluY SINE Alu 89 309 -2 1928 151 5 69 chr12 140417821 140418142 -3864347 - MER47A DNA MER2_type -2029 294 1 948 279 81 79 chr12 140418142 140418544 -3863945 - L1MC4 LINE L1 -729 7313 6907 191 409 9 0 chr12 140419457 140419567 -3862922 + MIR SINE MIR 33 143 -65 358 311 106 6 chr12 140419908 140420069 -3862420 + MIR SINE MIR 85 261 -1 1793 145 14 40 chr12 140420102 140420398 -3862091 + AluSx SINE Alu 10 297 -15 1668 141 8 4 chr12 140420516 140420765 -3861724 - AluJo SINE Alu -48 264 15 243 323 0 0 chr12 140421054 140421150 -3861339 + G-rich Low_complexity Low_complexity 1 96 0 1745 147 20 37 chr12 140422118 140422417 -3860072 + AluSx SINE Alu 1 294 -18 983 182 27 0 chr12 140422772 140422959 -3859530 - MLT2B2 LTR ERVL -1 514 323 1426 164 31 0 chr12 140422965 140423221 -3859268 + L1MA4A LINE L1 5648 5911 -392 1507 165 90 4 chr12 140423224 140423503 -3858986 - MLT2B2 LTR ERVL -209 306 4 2153 103 7 7 chr12 140424350 140424641 -3857848 - AluSg SINE Alu -19 291 1 2206 116 10 0 chr12 140425007 140425301 -3857188 + AluSx SINE Alu 2 298 -14 221 292 62 0 chr12 140425378 140425443 -3857046 - L2 LINE L2 -20 3293 3225 1175 182 198 25 chr12 140425555 140425750 -3856739 - MLT1A2 LTR MaLR 0 374 214 1755 154 31 7 chr12 140425750 140426036 -3856453 + AluJb SINE Alu 1 293 -19 1175 182 198 25 chr12 140426036 140426159 -3856330 - MLT1A2 LTR MaLR -160 214 1 388 372 71 0 chr12 140426166 140426362 -3856127 - MIR SINE MIR -15 247 38 198 355 126 6 chr12 140426429 140426612 -3855877 - L2 LINE L2 -220 3052 2848 1711 244 120 21 chr12 140426660 140427225 -3855264 + MLT1E3 LTR MaLR 1 621 -3 1611 176 6 71 chr12 140427231 140427554 -3854935 + AluJb SINE Alu 1 302 -10 184 115 0 0 chr12 140428189 140428215 -3854274 + MIR SINE MIR 121 146 -116 24 0 0 0 chr12 140428427 140428451 -3854038 + AT_rich Low_complexity Low_complexity 1 24 0 2421 76 7 0 chr12 140429633 140429935 -3852554 - AluY SINE Alu -7 304 1 1918 137 32 3 chr12 140430029 140430314 -3852175 + AluSx SINE Alu 1 293 -19 327 275 9 0 chr12 140430609 140430718 -3851771 + CT-rich Low_complexity Low_complexity 2 111 0 444 208 12 12 chr12 140430734 140430907 -3851582 + (TCTCTG)n Simple_repeat Simple_repeat 2 174 0 225 196 0 0 chr12 140430909 140430960 -3851529 + CT-rich Low_complexity Low_complexity 3 53 0 856 165 20 16 chr12 140432925 140433519 -3848970 + CT-rich Low_complexity Low_complexity 1 596 0 397 237 41 10 chr12 140433970 140434113 -3848376 - MLT1J1 LTR MaLR -244 206 61 487 283 167 6 chr12 140434226 140434406 -3848083 - MIR SINE MIR -4 258 50 1455 200 89 22 chr12 140434409 140434814 -3847675 - L1MA9 LINE L1 -2 6310 5879 2155 96 26 35 chr12 140434820 140435132 -3847357 - AluSx SINE Alu -3 309 1 266 91 0 52 chr12 140435515 140435592 -3846897 + (TG)n Simple_repeat Simple_repeat 1 73 0 196 298 53 43 chr12 140435650 140435744 -3846745 + MIR SINE MIR 42 136 -126 498 261 69 30 chr12 140436233 140436436 -3846053 + MER46C DNA MER2_type 86 296 -42 317 298 149 6 chr12 140436480 140436648 -3845841 + MER113 DNA MER1_type? 233 424 -97 2223 116 0 3 chr12 140437082 140437392 -3845097 - AluSx SINE Alu -3 309 1 310 269 43 64 chr12 140437911 140438052 -3844437 + MER5A DNA MER1_type 49 186 -3 2264 115 0 0 chr12 140438504 140438809 -3843680 + AluSx SINE Alu 1 305 -7 423 286 35 35 chr12 140439034 140439233 -3843256 + Charlie8 DNA MER1_type 1 199 -2218 2226 125 0 19 chr12 140439406 140439725 -3842764 - AluSq SINE Alu 0 313 1 4032 99 13 0 chr12 140440243 140440790 -3841699 - MER41A LTR ERV1 0 554 1 730 289 109 25 chr12 140440842 140441126 -3841363 - MLT1E3 LTR MaLR -1 623 316 270 237 17 0 chr12 140441130 140441189 -3841300 - MER47A DNA MER2_type 0 366 307 1384 171 5 0 chr12 140441197 140441414 -3841075 + AluJb SINE Alu 86 303 -9 1432 199 18 0 chr12 140441414 140441700 -3840789 - MER47A DNA MER2_type -75 291 1 347 113 129 0 chr12 140441788 140441850 -3840639 - MLT1E LTR MaLR -446 147 78 919 270 69 60 chr12 140442038 140442575 -3839914 - MLT1H LTR MaLR -1 548 7 611 309 38 8 chr12 140443357 140443593 -3838896 - MIR SINE MIR -3 259 17 398 218 68 45 chr12 140443912 140444045 -3838444 - MIR SINE MIR -115 147 12 402 147 0 0 chr12 140444311 140444379 -3838110 + (TG)n Simple_repeat Simple_repeat 1 68 0 2016 99 0 119 chr12 140446838 140447183 -3835306 - AluSx SINE Alu -8 304 1 2085 190 43 54 chr12 140447197 140447579 -3834910 - L1PB4 LINE L1 -2 6154 5778 2205 96 4 0 chr12 140447579 140447859 -3834630 - AluSp SINE Alu -32 281 1 2085 190 43 54 chr12 140447859 140447992 -3834497 - L1PB4 LINE L1 -378 5778 5645 2058 136 7 7 chr12 140448129 140448437 -3834052 + AluSx SINE Alu 1 308 -4 335 209 0 11 chr12 140448438 140448529 -3833960 + (TA)n Simple_repeat Simple_repeat 1 90 0 234 133 0 0 chr12 140448539 140448584 -3833905 - LTR66 LTR ERVL -168 442 398 222 233 0 0 chr12 140448584 140448627 -3833862 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 278 250 23 23 chr12 140448630 140448718 -3833771 + L1MC4 LINE L1 6616 6703 -1339 314 330 37 18 chr12 140448718 140448827 -3833662 - L1MC4 LINE L1 -1339 6703 6593 215 343 0 0 chr12 140449391 140449473 -3833016 + CT-rich Low_complexity Low_complexity 1 137 0 308 261 134 8 chr12 140449604 140449723 -3832766 + MER5B DNA MER1_type 45 178 0 1910 141 0 7 chr12 140449903 140450173 -3832316 + AluJo SINE Alu 14 281 -31 261 0 0 0 chr12 140450180 140450209 -3832280 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2205 132 7 0 chr12 140450270 140450574 -3831915 - AluSx SINE Alu -6 306 1 1120 228 178 21 chr12 140450939 140451365 -3831124 - MLT1J LTR MaLR -8 503 11 2061 153 0 10 chr12 140451732 140452045 -3830444 - AluSx SINE Alu -2 310 1 204 209 75 15 chr12 140452530 140452597 -3829892 - L2 LINE L2 0 3313 3243 2256 97 7 0 chr12 140452654 140452943 -3829546 - AluSg SINE Alu -5 305 15 3061 123 44 6 chr12 140453582 140454060 -3828429 - MER1A DNA MER1_type 0 529 34 264 222 111 0 chr12 140454355 140454418 -3828071 - L2 LINE L2 -11 3261 3192 1329 231 74 41 chr12 140454957 140455134 -3827355 + MER92B LTR ERV1 81 251 -385 2459 73 0 7 chr12 140455134 140455435 -3827054 + AluY SINE Alu 1 299 -12 1329 231 74 41 chr12 140455435 140455795 -3826694 + MER92B LTR ERV1 251 636 0 227 171 0 14 chr12 140456027 140456044 -3826445 + CT-rich Low_complexity Low_complexity 1 17 -52 2226 114 27 0 chr12 140456044 140456343 -3826146 - AluSx SINE Alu -5 307 1 227 171 0 14 chr12 140456343 140456395 -3826094 + CT-rich Low_complexity Low_complexity 17 69 0 3933 110 5 51 chr12 140456542 140456648 -3825841 - MER41B LTR ERV1 0 635 526 1966 127 117 0 chr12 140456648 140456955 -3825534 + MER61A LTR ERV1 1 343 0 3933 110 5 51 chr12 140456955 140456986 -3825503 - MER41B LTR ERV1 -109 526 495 2361 77 3 26 chr12 140456986 140457298 -3825191 + AluSc SINE Alu 1 305 -4 3933 110 5 51 chr12 140457298 140457824 -3824665 - MER41B LTR ERV1 -140 495 2 1743 174 91 5 chr12 140458654 140459027 -3823462 - MER74A LTR ERVL -35 523 119 261 266 98 35 chr12 140459192 140459365 -3823124 - LTR37B LTR ERV1 0 468 285 2059 139 44 27 chr12 140459513 140459880 -3822609 + THE1C LTR MaLR 1 373 -2 398 304 109 38 chr12 140460486 140460779 -3821710 + MLT1J LTR MaLR 2 315 -196 442 262 74 43 chr12 140460969 140461225 -3821264 - LTR33 LTR ERVL -52 469 206 1051 100 0 0 chr12 140461406 140461546 -3820943 + AluSp/q SINE Alu 171 310 -3 620 262 106 62 chr12 140461552 140461863 -3820626 - MLT1C LTR MaLR -33 434 99 2174 111 14 0 chr12 140461863 140462151 -3820338 + AluSx SINE Alu 1 292 -20 620 262 106 62 chr12 140462151 140462255 -3820234 - MLT1C LTR MaLR -368 99 1 311 257 27 0 chr12 140462668 140462742 -3819747 + L1MC3 LINE L1 6571 6646 -1139 * 380 223 29 34 chr12 140462677 140462796 -3819693 - L1MC4 LINE L1 -1339 6983 1972 * 400 308 48 67 chr12 140462719 140462927 -3819562 + L1ME4a LINE L1 5891 6094 -27 482 291 74 62 chr12 140464450 140464636 -3817853 - L2 LINE L2 0 3313 3131 1824 156 10 20 chr12 140464636 140464938 -3817551 - AluJo SINE Alu -13 299 1 482 291 74 62 chr12 140464938 140464965 -3817524 - L2 LINE L2 -182 3131 3106 2630 45 0 6 chr12 140464965 140465278 -3817211 + AluY SINE Alu 1 311 0 482 291 74 62 chr12 140465278 140465664 -3816825 - L2 LINE L2 -207 3106 2713 2267 99 10 16 chr12 140465804 140466108 -3816381 - AluSc SINE Alu -7 302 1 204 282 43 12 chr12 140466538 140466701 -3815788 + (GAGTG)n Simple_repeat Simple_repeat 3 170 0 216 274 22 39 chr12 140466915 140467094 -3815395 + (GAGTG)n Simple_repeat Simple_repeat 5 180 0 615 308 123 45 chr12 140467600 140467974 -3814515 + MLT1J LTR MaLR 100 502 -9 206 424 16 0 chr12 140467976 140468101 -3814388 - L2 LINE L2 -924 2390 2264 32 0 0 0 chr12 140468488 140468520 -3813969 + AT_rich Low_complexity Low_complexity 1 32 0 551 272 156 0 chr12 140469000 140469180 -3813309 - MIR SINE MIR -30 232 25 1449 201 116 34 chr12 140469263 140469470 -3813019 - MLT1D LTR MaLR 0 505 316 2301 166 46 2 chr12 140469470 140469880 -3812609 + MSTA LTR MaLR 1 428 0 1449 201 116 34 chr12 140469880 140470037 -3812452 - MLT1D LTR MaLR -189 316 173 2325 156 49 10 chr12 140470037 140470448 -3812041 + MSTA LTR MaLR 1 427 -1 1449 201 116 34 chr12 140470448 140470549 -3811940 - MLT1D LTR MaLR -332 173 1 1896 145 28 0 chr12 140470681 140470971 -3811518 + AluSx SINE Alu 1 298 -14 357 82 0 0 chr12 140470984 140471033 -3811456 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 290 197 299 8 chr12 140471795 140471912 -3810577 + MLT1H LTR MaLR 325 475 -74 595 280 37 33 chr12 140472433 140472603 -3809886 + MIR SINE MIR 43 216 -46 1785 114 86 44 chr12 140472603 140472963 -3809526 - THE1C LTR MaLR 0 375 1 595 280 37 33 chr12 140472963 140473006 -3809483 + MIR SINE MIR 216 257 -5 1384 196 18 33 chr12 140473297 140473506 -3808983 - L1MA9 LINE L1 -281 6031 5827 2364 88 3 3 chr12 140473506 140473803 -3808686 - AluSc SINE Alu -12 297 1 1384 196 18 33 chr12 140473803 140473930 -3808559 - L1MA9 LINE L1 -485 5827 5700 412 327 70 0 chr12 140473935 140474134 -3808355 + L1MA9 LINE L1 6010 6222 -90 229 188 59 59 chr12 140474169 140474254 -3808235 + L1MA9 LINE L1 6206 6290 -22 570 241 91 37 chr12 140474489 140474722 -3807767 - L1ME1 LINE L1 -51 6115 5875 2462 96 0 0 chr12 140475450 140475762 -3806727 + AluSx SINE Alu 1 312 0 1796 174 3 0 chr12 140479020 140479313 -3803176 + AluJo SINE Alu 1 294 -18 1039 275 78 27 chr12 140480006 140480487 -3802002 + LTR1B LTR ERV1 33 603 -332 1677 227 102 23 chr12 140480588 140480726 -3801763 + MLT1F LTR MaLR 11 137 -405 185 0 40 0 chr12 140480726 140480751 -3801738 + (TC)n Simple_repeat Simple_repeat 2 27 0 1677 227 102 23 chr12 140480751 140481083 -3801406 + MLT1F LTR MaLR 137 518 -24 1153 218 203 0 chr12 140481090 140481406 -3801083 - MLT1F1 LTR MaLR 0 567 188 898 210 6 7 chr12 140481436 140481632 -3800857 - MLT1B LTR MaLR -11 374 169 1677 170 0 29 chr12 140481641 140481952 -3800537 - AluJb SINE Alu -10 302 1 677 219 0 0 chr12 140481970 140482093 -3800396 - FLAM_C SINE Alu -20 123 1 727 185 73 7 chr12 140482094 140482245 -3800244 - MLT1B LTR MaLR -219 171 11 612 271 11 33 chr12 140482260 140482441 -3800048 - MLT1E LTR MaLR -364 178 2 1667 255 45 34 chr12 140482677 140483324 -3799165 - L1MC4a LINE L1 -1823 5985 5332 1660 242 98 31 chr12 140483412 140483921 -3798568 - MER77 LTR ERV1 -9 596 54 2345 286 152 77 chr12 140484168 140486266 -3796223 + L2 LINE L2 811 3139 -174 484 228 8 0 chr12 140486267 140486753 -3795736 + (CA)n Simple_repeat Simple_repeat 1 490 0 410 232 12 0 chr12 140486765 140487275 -3795214 + (CA)n Simple_repeat Simple_repeat 1 516 0 323 254 12 152 chr12 140487279 140487347 -3795142 + L2 LINE L2 3172 3205 -108 2007 124 0 3 chr12 140487347 140487646 -3794843 - AluSq SINE Alu -15 298 1 323 254 12 152 chr12 140487646 140487742 -3794747 + L2 LINE L2 3205 3313 0 4732 152 39 50 chr12 140488257 140488355 -3794134 + L1MA9 LINE L1 5372 5470 -842 1984 146 21 32 chr12 140488355 140488732 -3793757 + THE1C LTR MaLR 3 375 0 4732 152 39 50 chr12 140488732 140489585 -3792904 + L1MA9 LINE L1 5470 6312 0 833 279 122 14 chr12 140490023 140490358 -3792131 - MLT1J2 LTR MaLR -72 374 1 1677 155 20 14 chr12 140491119 140491416 -3791073 + AluJo SINE Alu 1 299 -13 366 235 31 20 chr12 140491491 140491589 -3790900 + MIR SINE MIR 54 152 -110 414 312 35 35 chr12 140491732 140491902 -3790587 - MLT1I LTR MaLR -140 269 100 2211 95 0 0 chr12 140492066 140492361 -3790128 + AluSg SINE Alu 1 295 -15 496 265 27 63 chr12 140492490 140492713 -3789776 - MER46C DNA MER2_type -123 215 1 187 172 0 0 chr12 140492755 140492784 -3789705 + L2 LINE L2 3227 3255 -17 1797 132 38 3 chr12 140494081 140494370 -3788119 - AluSq SINE Alu -14 299 1 456 321 67 16 chr12 140494724 140494917 -3787572 - MLT1K LTR MaLR -244 344 142 220 284 95 0 chr12 140495006 140495080 -3787409 + L2 LINE L2 3233 3313 0 185 294 20 0 chr12 140495093 140495144 -3787345 + MIR SINE MIR 163 214 -48 389 307 59 70 chr12 140495221 140495491 -3786998 + Charlie8 DNA MER1_type 9 275 -2142 421 194 10 31 chr12 140495513 140495611 -3786878 - AluJ/FLAM SINE Alu -215 97 2 1680 145 51 0 chr12 140495695 140495991 -3786498 - AluJb SINE Alu -1 311 1 1936 134 0 3 chr12 140497016 140497314 -3785175 - AluSg SINE Alu -8 302 6 662 329 67 3 chr12 140500047 140500345 -3782144 - MLT1K LTR MaLR -144 444 128 1755 160 13 16 chr12 140500520 140500827 -3781662 - AluJb SINE Alu -6 306 1 1057 136 7 0 chr12 140501582 140501737 -3780752 + MLT2A2 LTR ERVL 213 368 -85 383 258 11 11 chr12 140501736 140501829 -3780660 - MSTD LTR MaLR -91 305 213 * 504 161 0 0 chr12 140501864 140501945 -3780544 + L1M2 LINE L1 5706 5786 -505 45252 36 3 1 chr12 140501981 140508121 -3774368 + L1PA4 LINE L1 4 6152 -3 183 80 0 0 chr12 140508124 140508149 -3774340 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 958 199 109 115 chr12 140508441 140508732 -3773757 - MLT1C LTR MaLR -2 465 177 1980 101 9 67 chr12 140508732 140509060 -3773429 - AluSx SINE Alu -3 309 1 958 199 109 115 chr12 140509060 140509236 -3773253 - MLT1C LTR MaLR -290 177 1 2171 8 0 0 chr12 140509574 140509816 -3772673 - AluYa5 SINE Alu -10 301 60 749 175 181 0 chr12 140509920 140510080 -3772409 - AluJo SINE Alu -113 199 11 186 143 0 0 chr12 140510134 140510169 -3772320 + (T)n Simple_repeat Simple_repeat 1 35 0 563 299 70 8 chr12 140510809 140511050 -3771439 + MIR SINE MIR 4 259 -3 983 209 33 70 chr12 140511116 140511187 -3771302 - L1ME3 LINE L1 -4 6158 6086 1843 166 3 0 chr12 140511187 140511483 -3771006 - AluJb SINE Alu -15 297 1 983 209 33 70 chr12 140511483 140511741 -3770748 - L1ME3 LINE L1 -76 6086 5841 334 290 9 9 chr12 140511829 140511936 -3770553 + Charlie8 DNA MER1_type 91 197 -2220 341 289 0 10 chr12 140512101 140512205 -3770284 + Charlie8 DNA MER1_type 415 517 -1900 807 266 186 43 chr12 140512688 140513086 -3769403 - MLT1H LTR MaLR 0 549 95 308 326 16 16 chr12 140513438 140513567 -3768922 - L1ME3 LINE L1 -2040 5768 5640 440 276 0 64 chr12 140514150 140514306 -3768183 + MER5B DNA MER1_type 6 151 -27 293 273 188 0 chr12 140514397 140514551 -3767938 - MIR SINE MIR -15 247 65 449 271 17 22 chr12 140514851 140515084 -3767405 + (TATATG)n Simple_repeat Simple_repeat 1 231 0 264 263 112 73 chr12 140515208 140515467 -3767022 + MLT1J LTR MaLR 1 269 -242 541 223 39 0 chr12 140515518 140515648 -3766841 + MER20 DNA MER1_type 80 214 -5 44798 39 2 4 chr12 140516195 140522363 -3760126 - L1PA4 LINE L1 -1 6154 3 382 77 0 0 chr12 140522627 140522679 -3759810 + L1PA3 LINE L1 6101 6152 -3 192 262 0 0 chr12 140522774 140522816 -3759673 + MIR SINE MIR 64 105 -157 230 291 47 39 chr12 140525432 140525559 -3756930 - MLT1I LTR MaLR -214 195 68 213 127 73 0 chr12 140526131 140526186 -3756303 + (TCCA)n Simple_repeat Simple_repeat 3 61 0 553 185 29 0 chr12 140526197 140526370 -3756119 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 884 256 55 75 chr12 140526390 140526769 -3755720 - L2 LINE L2 -3 3310 2927 2260 96 3 0 chr12 140526769 140527081 -3755408 - AluSq SINE Alu 0 313 1 884 256 55 75 chr12 140527081 140527318 -3755171 - L2 LINE L2 -386 2927 2687 298 296 123 71 chr12 140527819 140528201 -3754288 + MLT1K LTR MaLR 28 429 -159 1780 243 40 9 chr12 140528410 140528858 -3753631 + MLT1C LTR MaLR 6 467 0 2087 159 78 28 chr12 140529526 140529694 -3752795 + MLT1C LTR MaLR 1 159 -308 1900 154 3 7 chr12 140529694 140529992 -3752497 + AluJo SINE Alu 1 297 -15 2087 159 78 28 chr12 140529992 140530245 -3752244 + MLT1C LTR MaLR 159 443 -24 730 277 153 23 chr12 140530446 140530962 -3751527 - Charlie8 DNA MER1_type -1750 667 85 298 255 42 80 chr12 140530983 140531016 -3751473 + L2 LINE L2 3108 3141 -172 2008 136 0 28 chr12 140531016 140531333 -3751156 + AluJo SINE Alu 1 308 -4 298 255 42 80 chr12 140531333 140531511 -3750978 + L2 LINE L2 3141 3311 -2 237 273 45 0 chr12 140532452 140532562 -3749927 + (CAGAGA)n Simple_repeat Simple_repeat 6 120 0 490 267 70 27 chr12 140536464 140536651 -3745838 + MIR SINE MIR 6 200 -62 1918 137 32 3 chr12 140536788 140537073 -3745416 + AluSx SINE Alu 1 293 -19 327 275 9 0 chr12 140537368 140537477 -3745012 + CT-rich Low_complexity Low_complexity 2 111 0 387 195 13 20 chr12 140537493 140537642 -3744847 + (TCTCTG)n Simple_repeat Simple_repeat 3 150 0 856 166 16 20 chr12 140539624 140539997 -3742492 + CT-rich Low_complexity Low_complexity 1 371 0 397 237 41 10 chr12 140540439 140540582 -3741907 - MLT1J1 LTR MaLR -244 206 61 461 294 167 6 chr12 140540695 140540875 -3741614 - MIR SINE MIR -4 258 50 1485 201 89 20 chr12 140540878 140541282 -3741207 - L1MA9 LINE L1 -2 6310 5879 2065 101 26 39 chr12 140541288 140541594 -3740895 - AluSx SINE Alu -10 302 1 284 89 0 51 chr12 140541977 140542056 -3740433 + (TG)n Simple_repeat Simple_repeat 1 75 0 196 298 53 43 chr12 140542114 140542208 -3740281 + MIR SINE MIR 42 136 -126 498 261 69 30 chr12 140542697 140542900 -3739589 + MER46C DNA MER2_type 86 296 -42 317 298 149 6 chr12 140542944 140543112 -3739377 + MER113 DNA MER1_type? 233 424 -97 2276 109 0 3 chr12 140543546 140543857 -3738632 - AluSx SINE Alu -2 310 1 272 284 43 64 chr12 140544376 140544517 -3737972 + MER5A DNA MER1_type 49 186 -3 2239 118 0 0 chr12 140544969 140545274 -3737215 + AluSx SINE Alu 1 305 -7 423 286 35 35 chr12 140545499 140545698 -3736791 + Charlie8 DNA MER1_type 1 199 -2218 2235 120 0 19 chr12 140545871 140546188 -3736301 - AluSq SINE Alu -2 311 1 4016 101 13 0 chr12 140546705 140547252 -3735237 - MER41A LTR ERV1 0 554 1 723 289 109 25 chr12 140547304 140547588 -3734901 - MLT1E3 LTR MaLR -1 623 316 270 237 17 0 chr12 140547592 140547651 -3734838 - MER47A DNA MER2_type 0 366 307 1392 170 5 0 chr12 140547659 140547877 -3734612 + AluJb SINE Alu 86 304 -8 1448 196 18 0 chr12 140547877 140548163 -3734326 - MER47A DNA MER2_type -75 291 1 347 113 129 0 chr12 140548251 140548313 -3734176 - MLT1E LTR MaLR -446 147 78 943 266 69 60 chr12 140548501 140549038 -3733451 - MLT1H LTR MaLR -1 548 7 611 309 38 8 chr12 140549820 140550056 -3732433 - MIR SINE MIR -3 259 17 398 218 68 45 chr12 140550375 140550508 -3731981 - MIR SINE MIR -115 147 12 402 147 0 0 chr12 140550774 140550842 -3731647 + (TG)n Simple_repeat Simple_repeat 1 68 0 2002 103 0 118 chr12 140553302 140553650 -3728839 - AluSx SINE Alu -5 307 1 2085 190 43 54 chr12 140553664 140554046 -3728443 - L1PB4 LINE L1 -2 6154 5778 2205 96 4 0 chr12 140554046 140554326 -3728163 - AluSp SINE Alu -32 281 1 2085 190 43 54 chr12 140554326 140554459 -3728030 - L1PB4 LINE L1 -378 5778 5645 2058 136 7 7 chr12 140554596 140554904 -3727585 + AluSx SINE Alu 1 308 -4 335 209 0 11 chr12 140554905 140554996 -3727493 + (TA)n Simple_repeat Simple_repeat 1 90 0 234 133 0 0 chr12 140555006 140555051 -3727438 - LTR66 LTR ERVL -168 442 398 222 233 0 0 chr12 140555051 140555094 -3727395 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 278 250 23 23 chr12 140555097 140555185 -3727304 + L1MC4 LINE L1 6616 6703 -1339 314 330 37 18 chr12 140555185 140555294 -3727195 - L1MC4 LINE L1 -1339 6703 6593 229 301 0 15 chr12 140555858 140555939 -3726550 + CT-rich Low_complexity Low_complexity 1 134 0 329 263 136 0 chr12 140556070 140556188 -3726301 + MER5B DNA MER1_type 45 178 0 1895 144 0 7 chr12 140556368 140556638 -3725851 + AluJo SINE Alu 14 281 -31 216 0 0 0 chr12 140556645 140556669 -3725820 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2222 131 7 0 chr12 140556730 140557036 -3725453 - AluSx SINE Alu -4 308 1 1121 225 176 21 chr12 140557401 140557828 -3724661 - MLT1J LTR MaLR -8 503 11 2044 157 0 10 chr12 140558195 140558508 -3723981 - AluSx SINE Alu -2 310 1 204 209 75 15 chr12 140558993 140559060 -3723429 - L2 LINE L2 0 3313 3243 2240 100 7 0 chr12 140559117 140559408 -3723081 - AluSg SINE Alu -3 307 15 3055 123 44 6 chr12 140560047 140560525 -3721964 - MER1A DNA MER1_type 0 529 34 237 238 111 0 chr12 140560820 140560883 -3721606 - L2 LINE L2 -11 3261 3192 1318 227 76 43 chr12 140561422 140561599 -3720890 + MER92B LTR ERV1 81 251 -385 2404 83 0 7 chr12 140561599 140561899 -3720590 + AluY SINE Alu 1 298 -13 1318 227 76 43 chr12 140561899 140562259 -3720230 + MER92B LTR ERV1 251 636 0 191 182 0 15 chr12 140562453 140562470 -3720019 + CT-rich Low_complexity Low_complexity 1 17 -48 2181 125 26 0 chr12 140562470 140562773 -3719716 - AluSx SINE Alu -1 311 1 191 182 0 15 chr12 140562773 140562821 -3719668 + CT-rich Low_complexity Low_complexity 17 65 0 3919 111 5 51 chr12 140562968 140563074 -3719415 - MER41B LTR ERV1 0 635 526 1978 124 117 0 chr12 140563074 140563381 -3719108 + MER61A LTR ERV1 1 343 0 3919 111 5 51 chr12 140563381 140563412 -3719077 - MER41B LTR ERV1 -109 526 495 2322 81 3 26 chr12 140563412 140563722 -3718767 + AluSc SINE Alu 1 303 -6 3919 111 5 51 chr12 140563722 140564248 -3718241 - MER41B LTR ERV1 -140 495 2 1715 177 91 5 chr12 140565078 140565451 -3717038 - MER74A LTR ERVL -35 523 119 240 272 98 35 chr12 140565616 140565789 -3716700 - LTR37B LTR ERV1 0 468 285 2059 139 44 27 chr12 140565937 140566304 -3716185 + THE1C LTR MaLR 1 373 -2 390 292 128 38 chr12 140566910 140567198 -3715291 + MLT1J LTR MaLR 2 315 -196 428 323 114 2 chr12 140567388 140567791 -3714698 - LTR33 LTR ERVL -52 469 22 1051 100 0 0 chr12 140567825 140567965 -3714524 + AluSp/q SINE Alu 171 310 -3 658 257 106 62 chr12 140567971 140568282 -3714207 - MLT1C LTR MaLR -33 434 99 2174 111 14 0 chr12 140568282 140568570 -3713919 + AluSx SINE Alu 1 292 -20 658 257 106 62 chr12 140568570 140568674 -3713815 - MLT1C LTR MaLR -368 99 1 378 259 37 74 chr12 140569006 140569195 -3713294 - L1MC4 LINE L1 -1252 6790 6609 * 399 295 62 62 chr12 140569133 140569326 -3713163 + L1ME4a LINE L1 5902 6094 -27 303 311 57 80 chr12 140570849 140571035 -3711454 - L2 LINE L2 0 3313 3131 1797 155 10 26 chr12 140571035 140571339 -3711150 - AluJo SINE Alu -13 299 1 303 311 57 80 chr12 140571339 140571364 -3711125 - L2 LINE L2 -182 3131 3107 371 59 0 0 chr12 140572288 140572339 -3710150 + L1MA8 LINE L1 6081 6131 -160 2276 103 3 3 chr12 140572340 140572672 -3709817 + AluSx SINE Alu 1 332 0 1744 155 4 18 chr12 140572989 140573267 -3709222 + AluSq SINE Alu 1 274 -39 550 257 75 12 chr12 140623813 140624110 -3658379 + LOR1a LTR ERV1 115 487 -10 253 324 62 66 chr12 140624141 140624413 -3658076 - L2 LINE L2 0 3313 3043 367 171 27 90 chr12 140625930 140626041 -3656448 - L1PB4 LINE L1 -8 6148 6045 336 250 0 0 chr12 140626039 140626123 -3656366 + L1P5 LINE L1 5670 5753 -403 * 234 214 71 62 chr12 140626255 140626367 -3656122 + MLT1K LTR MaLR 320 432 -156 189 214 0 0 chr12 140626373 140626415 -3656074 + GA-rich Low_complexity Low_complexity 2 43 0 297 273 37 64 chr12 140627131 140627318 -3655171 - MLT1K LTR MaLR -284 304 123 1067 218 69 69 chr12 140628228 140628632 -3653857 - MLT1D LTR MaLR -3 502 99 2011 208 21 0 chr12 140628634 140629061 -3653428 + L1MA9 LINE L1 5716 6151 -161 765 131 83 36 chr12 140629059 140629227 -3653262 + L1P5 LINE L1 5524 5699 -457 * 339 160 56 62 chr12 140629248 140629392 -3653097 + (TA)n Simple_repeat Simple_repeat 1 143 0 431 164 0 0 chr12 140629496 140629569 -3652920 - L1PA16 LINE L1 -325 5841 5769 * 4837 142 7 8 chr12 140629566 140630399 -3652090 - L1PA16 LINE L1 -1 6165 5334 351 0 0 0 chr12 140630603 140630642 -3651847 + (TG)n Simple_repeat Simple_repeat 2 40 0 444 343 95 13 chr12 140630725 140631113 -3651376 + LTR16A LTR ERVL 30 449 -1 363 276 163 36 chr12 140631123 140631319 -3651170 - L2 LINE L2 -51 3262 3042 516 265 102 0 chr12 140631477 140631624 -3650865 - MER5B DNA MER1_type -2 176 15 1942 147 0 3 chr12 140631913 140632222 -3650267 + AluSx SINE Alu 1 281 -31 279 114 0 0 chr12 140632799 140632843 -3649646 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 588 120 33 0 chr12 140633045 140633137 -3649352 - L1MA9 LINE L1 -162 6150 6056 339 155 0 0 chr12 140633256 140633314 -3649175 + LTR67 LTR ERVL 484 541 -16 807 230 5 68 chr12 140633449 140633518 -3648971 - MER3 DNA MER1_type 0 209 137 2421 81 0 3 chr12 140633518 140633813 -3648676 + AluSp SINE Alu 1 294 -19 807 230 5 68 chr12 140633813 140633965 -3648524 - MER3 DNA MER1_type -72 137 2 1005 203 161 23 chr12 140634206 140634511 -3647978 + LOR1b LTR ERV1 115 461 0 517 336 44 21 chr12 140634537 140634876 -3647613 - L2 LINE L2 0 3313 2967 923 164 76 0 chr12 140635344 140635515 -3646974 + MER20 DNA MER1_type 32 215 -4 402 115 0 0 chr12 140635525 140635586 -3646903 + (TTCC)n Simple_repeat Simple_repeat 3 63 0 188 108 0 27 chr12 140635583 140635620 -3646869 + (TTCTC)n Simple_repeat Simple_repeat 3 38 0 * 1723 257 48 20 chr12 140635660 140636200 -3646289 - L1ME3A LINE L1 -2 6168 5614 210 320 74 16 chr12 140636329 140636451 -3646038 + L2 LINE L2 2733 2861 -453 3346 164 29 41 chr12 140637567 140638361 -3644128 + L1MC2 LINE L1 5176 5946 -398 4577 165 23 44 chr12 140638461 140639434 -3643055 + L1MC2 LINE L1 5199 6146 -198 345 325 0 0 chr12 140639466 140639580 -3642909 - MIR SINE MIR -3 259 146 395 171 27 90 chr12 140641203 140641314 -3641175 - L1PB4 LINE L1 -8 6148 6045 * 1087 207 14 1 chr12 140641280 140641516 -3640973 + L1PB4 LINE L1 5632 5875 -281 315 369 0 21 chr12 140641692 140641833 -3640656 - L2 LINE L2 -1 3271 3134 290 247 24 9 chr12 140642260 140642345 -3640144 + L1MC4a LINE L1 7126 7201 -607 1329 257 110 35 chr12 140642345 140642827 -3639662 + L1MD3 LINE L1 7445 7962 -33 955 192 39 156 chr12 140642953 140643085 -3639404 + MLT1D LTR MaLR 1 147 -358 2271 108 0 3 chr12 140643085 140643408 -3639081 - AluSx SINE Alu 0 322 1 955 192 39 156 chr12 140643408 140643689 -3638800 + MLT1D LTR MaLR 147 367 -138 317 297 91 6 chr12 140643804 140643969 -3638520 - L2 LINE L2 -715 2599 2421 300 330 97 0 chr12 140644469 140644572 -3637917 + L2 LINE L2 3154 3266 -6 730 273 34 0 chr12 140644608 140644817 -3637672 + MER69 DNA AcHobo 539 754 -1772 * 2156 210 75 26 chr12 140644814 140645466 -3637023 + MER69 DNA AcHobo 1841 2524 -2 2729 182 14 8 chr12 140645590 140646107 -3636382 + MLT2B1 LTR ERVL 1 520 0 1335 270 49 19 chr12 140646356 140646826 -3635663 - L1ME3 LINE L1 -24 6138 5655 231 184 0 0 chr12 140647426 140647475 -3635014 - MER5C DNA MER1_type -50 274 226 1389 156 63 56 chr12 140647512 140647781 -3634708 - AluJo SINE Alu -8 304 34 222 389 9 0 chr12 140647782 140647895 -3634594 - MER5C DNA MER1_type -210 114 1 504 241 9 0 chr12 140649991 140650099 -3632390 + MER81 DNA DNA 5 113 -1 1912 161 42 26 chr12 140650251 140650272 -3632217 - L1PB4 LINE L1 -2 6154 6135 1946 134 58 30 chr12 140650272 140650637 -3631852 - THE1C LTR MaLR 0 375 1 1912 161 42 26 chr12 140650637 140650995 -3631494 - L1PB4 LINE L1 -21 6135 5769 2965 136 8 6 chr12 140650995 140651462 -3631027 - L1PA16 LINE L1 -1 6165 5695 316 250 59 22 chr12 140651808 140651944 -3630545 + LTR16B LTR ERVL 193 333 -131 849 169 38 0 chr12 140651959 140652119 -3630370 - L1MB1 LINE L1 -5 6163 5998 642 233 0 0 chr12 140652126 140652255 -3630234 + L1MB1 LINE L1 5743 5871 -318 362 275 117 0 chr12 140652255 140652375 -3630114 + LTR16B LTR ERVL 322 455 -9 838 302 160 23 chr12 140652512 140652850 -3629639 + MLT1K LTR MaLR 131 532 -56 875 67 27 0 chr12 140652850 140652999 -3629490 + (TG)n Simple_repeat Simple_repeat 2 154 0 838 302 160 23 chr12 140652999 140653054 -3629435 + MLT1K LTR MaLR 532 578 -10 348 341 55 9 chr12 140653296 140653513 -3628976 - MIR SINE MIR -13 249 23 2166 194 30 22 chr12 140654375 140654838 -3627651 - MLT1C LTR MaLR 0 467 1 448 181 0 32 chr12 140654922 140655016 -3627473 - L1MD3 LINE L1 -11 7984 7894 1296 224 58 6 chr12 140655020 140655332 -3627157 - L1MC4a LINE L1 -152 7656 7329 958 177 6 8 chr12 140655389 140655899 -3626590 + (CAT)n Simple_repeat Simple_repeat 1 508 0 861 156 0 0 chr12 140655899 140656102 -3626387 + (CACCAT)n Simple_repeat Simple_repeat 1 203 0 472 306 77 6 chr12 140656102 140656285 -3626204 - MIR SINE MIR -26 236 41 386 224 21 120 chr12 140656459 140656651 -3625838 + MLT1J LTR MaLR 229 401 -110 442 277 134 54 chr12 140656835 140657149 -3625340 - MER102b DNA MER1_type -2 339 1 2151 122 0 10 chr12 140657219 140657513 -3624976 + AluSx SINE Alu 1 291 -21 1712 146 0 78 chr12 140658491 140658799 -3623690 - AluJb SINE Alu -28 284 1 670 203 114 0 chr12 140658949 140658998 -3623491 + L1MA9 LINE L1 6099 6141 -171 261 0 0 0 chr12 140658998 140659027 -3623462 + (CA)n Simple_repeat Simple_repeat 1 29 0 670 203 114 0 chr12 140659027 140659135 -3623354 + L1MA9 LINE L1 6141 6274 -38 1160 250 25 47 chr12 140659138 140659342 -3623147 - L1ME1 LINE L1 -108 6058 5864 2181 121 0 0 chr12 140659342 140659639 -3622850 + AluSq SINE Alu 3 299 -14 1160 250 25 47 chr12 140659639 140659794 -3622695 - L1ME1 LINE L1 -302 5864 5707 363 238 24 0 chr12 140660026 140660110 -3622379 - L2 LINE L2 0 3272 3187 1764 127 0 28 chr12 140660435 140660726 -3621763 + L1PA16 LINE L1 5882 6164 -2 218 127 48 16 chr12 140660745 140660808 -3621681 + (TA)n Simple_repeat Simple_repeat 2 66 0 465 216 270 20 chr12 140661518 140661722 -3620767 - MLT1K LTR MaLR -141 447 193 2691 169 85 14 chr12 140661729 140662221 -3620268 - MER21A LTR ERV1 -6 925 399 990 180 161 0 chr12 140662237 140662454 -3620035 - MER21A LTR ERV1 -667 264 13 324 225 117 63 chr12 140663192 140663385 -3619104 + MLT1G1 LTR MaLR 193 369 -173 569 144 40 16 chr12 140663462 140663718 -3618771 + (TCTA)n Simple_repeat Simple_repeat 1 262 0 255 173 96 0 chr12 140663730 140663782 -3618707 + MLT1G1 LTR MaLR 486 542 -13 252 277 0 0 chr12 140663782 140663847 -3618642 + (TA)n Simple_repeat Simple_repeat 1 65 0 271 284 9 43 chr12 140663888 140664004 -3618485 + MER112 DNA MER1_type 63 174 -86 336 259 37 9 chr12 140664329 140664437 -3618052 + L2 LINE L2 2226 2336 -978 325 146 0 0 chr12 140664551 140664606 -3617883 - L1MA9 LINE L1 -5 6307 6253 1243 47 106 18 chr12 140664607 140664777 -3617712 + MER107 DNA MER1_type 1 185 -12 895 215 69 33 chr12 140664777 140665051 -3617438 - L1MA9 LINE L1 -58 6254 5971 215 329 12 12 chr12 140665462 140665547 -3616942 + L2 LINE L2 2957 3041 -231 541 277 42 0 chr12 140665571 140665737 -3616752 - MIR SINE MIR -20 242 70 261 291 82 41 chr12 140666912 140667108 -3615381 - MIR SINE MIR -15 247 44 2002 121 11 11 chr12 140667628 140667939 -3614550 + AluSx SINE Alu 1 311 0 779 257 146 27 chr12 140667964 140668368 -3614121 + Charlie8 DNA MER1_type 85 536 -1881 1814 75 8 13 chr12 140669710 140669949 -3612540 + AluSq SINE Alu 56 293 -20 346 243 114 43 chr12 140669979 140670119 -3612370 - MIR SINE MIR 0 262 113 10140 28 0 0 chr12 140670490 140672435 -3610054 + L1PA4 LINE L1 4204 6152 -3 985 180 26 99 chr12 140672492 140672591 -3609898 + MLT1B LTR MaLR 65 170 -220 2136 112 10 20 chr12 140672591 140672895 -3609594 - AluSx SINE Alu -11 301 1 985 180 26 99 chr12 140672895 140673140 -3609349 + MLT1B LTR MaLR 170 384 -6 607 280 6 6 chr12 140673346 140673521 -3608968 - MIR SINE MIR -59 203 29 261 304 104 22 chr12 140673584 140673814 -3608675 - LTR16A LTR ERVL -52 398 150 1031 201 9 0 chr12 140674327 140674541 -3607948 - MER20 DNA MER1_type 0 219 4 828 249 40 49 chr12 140674670 140675099 -3607390 - MER34B LTR ERV1 -86 479 4 714 269 0 5 chr12 140675140 140675333 -3607156 - L1M4 LINE L1 -977 5169 4978 835 282 0 27 chr12 140675346 140675608 -3606881 + L1M4 LINE L1 4697 4951 -1195 291 291 9 27 chr12 140675769 140675879 -3606610 - MIR SINE MIR -51 211 104 553 230 40 27 chr12 140675883 140676031 -3606458 + MLT1G1 LTR MaLR 1 150 -445 2083 223 79 33 chr12 140676031 140676642 -3605847 + LTR48B LTR ERV1 1 639 -5 230 288 110 30 chr12 140676648 140676809 -3605680 + MLT1H1 LTR MaLR 71 231 -299 1843 25 0 0 chr12 140677060 140677263 -3605226 - AluYa5 SINE Alu -3 308 106 2165 113 13 10 chr12 140677271 140677581 -3604908 - AluSx SINE Alu -1 311 1 180 250 0 19 chr12 140677851 140677903 -3604586 + L2 LINE L2 3262 3312 -1 482 228 94 8 chr12 140678521 140678648 -3603841 + MER63A DNA MER1_type 60 197 -13 216 282 0 0 chr12 140679536 140679614 -3602875 + (CA)n Simple_repeat Simple_repeat 1 78 0 542 219 17 11 chr12 140679625 140679803 -3602686 + (CA)n Simple_repeat Simple_repeat 2 180 0 1237 242 183 23 chr12 140680286 140680815 -3601674 + LTR50 LTR ERVL 15 628 -167 575 81 0 0 chr12 140680851 140680925 -3601564 - Alu SINE Alu -235 75 2 9130 30 0 0 chr12 140680961 140682800 -3599689 + L1PA3 LINE L1 4317 6155 0 497 56 0 0 chr12 140682811 140683693 -3598796 + L1PA3 LINE L1 5293 6174 0 450 309 67 47 chr12 140683896 140684255 -3598234 + MLT1I LTR MaLR 41 406 -3 439 194 58 39 chr12 140684258 140684361 -3598128 + L2 LINE L2 3209 3313 0 575 276 56 13 chr12 140684463 140684695 -3597794 - MER20B DNA MER1_type 0 783 542 241 256 74 41 chr12 140684748 140684869 -3597620 - MER20B DNA MER1_type -357 426 302 1978 137 7 20 chr12 140684943 140685236 -3597253 - AluJb SINE Alu -23 289 1 340 322 0 0 chr12 140685237 140685324 -3597165 - MER20B DNA MER1_type -600 183 97 243 313 70 50 chr12 140686027 140686228 -3596261 - L1MC4 LINE L1 -2 8040 7836 936 243 9 26 chr12 140686486 140686712 -3595777 + MIR SINE MIR 29 250 -12 2698 88 3 0 chr12 140686723 140687077 -3595412 + THE1A LTR MaLR 1 355 0 555 291 55 31 chr12 140687192 140687484 -3595005 + LTR16B LTR ERVL 131 429 -35 634 245 73 15 chr12 140688472 140688676 -3593813 + MLT1C LTR MaLR 244 459 -8 21 36 0 0 chr12 140689524 140689552 -3592937 + AT_rich Low_complexity Low_complexity 1 28 0 411 161 25 0 chr12 140690274 140690355 -3592134 + LTR67 LTR ERVL 475 557 0 2392 74 117 6 chr12 140690994 140691320 -3591169 - THE1B LTR MaLR -2 362 1 1811 182 14 23 chr12 140691803 140692154 -3590335 + MER7A DNA MER2_type 1 346 0 1359 105 8 15 chr12 140693054 140693278 -3589211 - L1PA12 LINE L1 -204 5964 5750 180 0 0 0 chr12 140693413 140693433 -3589056 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1208 248 65 24 chr12 140693707 140694123 -3588366 - MLT1C LTR MaLR 0 467 35 860 272 17 22 chr12 140694167 140694364 -3588125 - MIR SINE MIR -20 242 45 2197 122 27 41 chr12 140694364 140694733 -3587756 + THE1B LTR MaLR 1 364 0 860 272 17 22 chr12 140694733 140694767 -3587722 - MIR SINE MIR -217 45 12 5138 110 13 28 chr12 140694933 140695780 -3586709 - L1PA13 LINE L1 -2 6161 5328 308 340 126 25 chr12 140696313 140696472 -3586017 + LTR16C LTR ERVL 106 280 -211 1493 167 136 45 chr12 140696542 140696899 -3585590 + MSTB1 LTR MaLR 1 400 -32 1700 172 3 18 chr12 140696899 140697218 -3585271 - AluJb SINE Alu 0 315 1 1493 167 136 45 chr12 140697218 140697255 -3585234 + MSTB1 LTR MaLR 400 432 0 641 238 65 11 chr12 140697294 140697479 -3585010 + LTR16C LTR ERVL 297 491 0 289 109 0 0 chr12 140698486 140698532 -3583957 - MADE1 DNA Mariner 0 80 35 304 265 159 29 chr12 140699667 140699837 -3582652 - L2 LINE L2 0 3313 3122 844 276 53 9 chr12 140700287 140700512 -3581977 + MIR SINE MIR 24 258 -4 255 333 97 0 chr12 140701887 140701980 -3580509 - L2 LINE L2 -7 3306 3205 536 312 115 15 chr12 140702046 140702376 -3580113 + L2 LINE L2 2373 2735 -579 544 273 19 0 chr12 140702384 140702545 -3579944 + L1MA4 LINE L1 6020 6183 -117 2117 135 0 3 chr12 140702724 140703027 -3579462 + AluSg SINE Alu 1 302 -8 1823 145 51 0 chr12 140704052 140704348 -3578141 + AluJb SINE Alu 1 311 -1 440 194 10 31 chr12 140704432 140704530 -3577959 + AluJ/FLAM SINE Alu 2 97 -215 335 307 59 70 chr12 140704552 140704822 -3577667 - Charlie8 DNA MER1_type -2142 275 9 188 294 20 0 chr12 140704899 140704950 -3577539 - MIR SINE MIR -48 214 163 227 284 95 0 chr12 140704963 140705037 -3577452 - L2 LINE L2 0 3313 3233 405 321 67 16 chr12 140705126 140705319 -3577170 + MLT1K LTR MaLR 142 344 -244 1938 132 38 3 chr12 140705673 140705962 -3576527 + AluSq SINE Alu 1 299 -14 186 172 0 0 chr12 140707259 140707288 -3575201 - L2 LINE L2 -17 3255 3227 460 265 27 63 chr12 140707330 140707553 -3574936 + MER46C DNA MER2_type 1 215 -123 2355 95 0 0 chr12 140707682 140707977 -3574512 - AluSg SINE Alu -15 295 1 374 312 35 35 chr12 140708141 140708311 -3574178 + MLT1I LTR MaLR 100 269 -140 371 265 20 10 chr12 140708454 140708552 -3573937 - MIR SINE MIR -110 152 54 1824 155 20 14 chr12 140708627 140708924 -3573565 - AluJo SINE Alu -13 299 1 523 269 21 0 chr12 140709685 140709826 -3572663 + MLT1J2 LTR MaLR 1 144 -306 567 179 89 42 chr12 140709962 140710130 -3572359 + L1PB4 LINE L1 5524 5699 -457 345 202 35 46 chr12 140710152 140710325 -3572164 + (TA)n Simple_repeat Simple_repeat 1 171 0 2039 187 0 3 chr12 140710328 140710697 -3571792 + L1PB4 LINE L1 5782 6149 -7 442 214 52 61 chr12 140710703 140710719 -3571770 + L1MA9 LINE L1 6140 6155 -157 270 0 0 0 chr12 140710719 140710749 -3571740 + (CA)n Simple_repeat Simple_repeat 2 31 0 442 214 52 61 chr12 140710749 140710901 -3571588 + L1MA9 LINE L1 6155 6309 -3 405 226 113 0 chr12 140710907 140711013 -3571476 - MLT1D LTR MaLR -387 118 1 482 279 64 6 chr12 140711173 140711345 -3571144 + MIR SINE MIR 12 193 -69 424 276 92 66 chr12 140711351 140711579 -3570910 - LTR16C LTR ERVL -7 484 251 332 284 94 47 chr12 140711659 140712021 -3570468 - LTR16A1 LTR ERVL -49 408 30 563 321 111 3 chr12 140712501 140712825 -3569664 - MLT1K LTR MaLR -101 487 129 1140 267 85 52 chr12 140713883 140713926 -3568563 - MLT1E LTR MaLR -27 566 526 1815 163 20 3 chr12 140713926 140714220 -3568269 + AluJo SINE Alu 1 299 -13 1140 267 85 52 chr12 140714220 140714715 -3567774 - MLT1E LTR MaLR -67 526 10 1777 187 0 3 chr12 140715353 140715642 -3566847 + AluSg SINE Alu 1 288 -22 533 173 82 0 chr12 140716160 140716270 -3566219 - L1PB4 LINE L1 -1 6155 6037 485 313 69 9 chr12 140716631 140716848 -3565641 - Charlie8 DNA MER1_type -2185 232 3 251 194 43 0 chr12 140718996 140719089 -3563400 + (TG)n Simple_repeat Simple_repeat 2 98 0 275 194 29 48 chr12 140719123 140719226 -3563263 + (TATG)n Simple_repeat Simple_repeat 2 102 0 277 215 35 12 chr12 140719230 140719402 -3563087 + (TG)n Simple_repeat Simple_repeat 1 176 0 186 43 0 0 chr12 140721012 140721035 -3561454 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 233 270 52 0 chr12 140724694 140724809 -3557680 + (TCTCTG)n Simple_repeat Simple_repeat 6 126 0 298 255 42 80 chr12 140725750 140725928 -3556561 - L2 LINE L2 -2 3311 3141 2006 136 0 28 chr12 140725928 140726245 -3556244 - AluJo SINE Alu -4 308 1 298 255 42 80 chr12 140726245 140726278 -3556211 - L2 LINE L2 -172 3141 3108 730 277 153 23 chr12 140726299 140726815 -3555674 + Charlie8 DNA MER1_type 85 667 -1750 1955 159 78 28 chr12 140727016 140727269 -3555220 - MLT1C LTR MaLR -24 443 159 1900 154 3 7 chr12 140727269 140727567 -3554922 - AluJo SINE Alu -15 297 1 1955 159 78 28 chr12 140727567 140727735 -3554754 - MLT1C LTR MaLR -308 159 1 1675 243 40 9 chr12 140728403 140728851 -3553638 - MLT1C LTR MaLR 0 467 6 906 256 55 75 chr12 140729943 140730180 -3552309 + L2 LINE L2 2687 2927 -386 2411 96 3 0 chr12 140730180 140730492 -3551997 + AluSq SINE Alu 1 313 0 906 256 55 75 chr12 140730492 140730871 -3551618 + L2 LINE L2 2927 3310 -3 553 185 29 0 chr12 140730891 140731064 -3551425 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 213 127 73 0 chr12 140731075 140731130 -3551359 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 321 49 0 98 chr12 140734573 140734634 -3547855 - L1PA6 LINE L1 0 6154 6100 44875 39 1 4 chr12 140734898 140741068 -3541421 + L1PA4 LINE L1 3 6154 -1 521 223 39 0 chr12 140741615 140741745 -3540744 - MER20 DNA MER1_type -5 214 80 273 265 102 24 chr12 140741889 140742055 -3540434 - MLT1J LTR MaLR -332 179 1 388 266 16 24 chr12 140742159 140742419 -3540070 + (CATATA)n Simple_repeat Simple_repeat 1 257 0 229 246 175 0 chr12 140742742 140742868 -3539621 + MIR SINE MIR 100 247 -15 378 276 0 64 chr12 140742959 140743115 -3539374 - MER5B DNA MER1_type -27 151 6 304 326 16 16 chr12 140743698 140743827 -3538662 + L1ME3 LINE L1 5640 5768 -2040 801 266 186 43 chr12 140744179 140744577 -3537912 + MLT1H LTR MaLR 95 549 0 334 289 0 10 chr12 140745060 140745164 -3537325 - Charlie8 DNA MER1_type -1900 517 415 333 290 9 9 chr12 140745329 140745436 -3537053 - Charlie8 DNA MER1_type -2231 186 80 996 209 33 70 chr12 140745524 140745782 -3536707 + L1ME3 LINE L1 5841 6086 -76 1963 166 3 0 chr12 140745782 140746078 -3536411 + AluJb SINE Alu 1 297 -15 996 209 33 70 chr12 140746078 140746149 -3536340 + L1ME3 LINE L1 6086 6158 -4 565 299 70 8 chr12 140746215 140746456 -3536033 - MIR SINE MIR -3 259 4 186 143 0 0 chr12 140747088 140747123 -3535366 + (A)n Simple_repeat Simple_repeat 1 35 0 1330 185 107 0 chr12 140747177 140747447 -3535042 + AluJb SINE Alu 11 309 -3 475 269 92 22 chr12 140748273 140748500 -3533989 + MIR SINE MIR 6 248 -14 290 267 95 43 chr12 140750619 140750735 -3531754 + LTR67 LTR ERVL 432 553 -4 619 343 48 3 chr12 140751325 140751614 -3530875 - MLT1K LTR MaLR -149 439 138 1870 160 13 16 chr12 140751793 140752100 -3530389 - AluJb SINE Alu -6 306 1 1053 136 7 0 chr12 140752855 140753010 -3529479 + MLT2A2 LTR ERVL 213 368 -85 375 258 11 11 chr12 140753009 140753102 -3529387 - MSTD LTR MaLR -91 305 213 * 505 161 0 0 chr12 140753137 140753218 -3529271 + L1M2 LINE L1 5706 5786 -505 45290 36 3 1 chr12 140753254 140759392 -3523097 + L1PA4 LINE L1 4 6152 -3 183 80 0 0 chr12 140759395 140759420 -3523069 + (A)n Simple_repeat Simple_repeat 1 25 0 947 199 109 115 chr12 140759713 140760004 -3522485 - MLT1C LTR MaLR -2 465 177 2115 100 9 67 chr12 140760004 140760333 -3522156 - AluSx SINE Alu -2 310 1 947 199 109 115 chr12 140760333 140760509 -3521980 - MLT1C LTR MaLR -290 177 1 1258 14 0 0 chr12 140760847 140760985 -3521504 - AluYa5 SINE Alu -10 301 164 597 198 256 6 chr12 140761264 140761436 -3521053 + MIR SINE MIR 28 242 -20 278 197 0 16 chr12 140761741 140761802 -3520687 + MLT1J1 LTR MaLR 31 90 -356 695 228 74 42 chr12 140761849 140762038 -3520451 + MLT1J2 LTR MaLR 256 450 0 609 288 102 26 chr12 140762702 140762966 -3519523 + MLT1H LTR MaLR 2 285 -264 253 248 76 29 chr12 140763072 140763177 -3519312 + MLT1H LTR MaLR 439 548 -1 193 29 59 0 chr12 140763364 140763398 -3519091 + (TAGA)n Simple_repeat Simple_repeat 1 36 0 603 102 0 0 chr12 140763405 140763493 -3518996 + (GA)n Simple_repeat Simple_repeat 1 88 0 684 217 35 69 chr12 140764451 140764741 -3517748 + MLT1D LTR MaLR 1 280 -225 1154 185 38 8 chr12 140765279 140765517 -3516972 + MLT1D LTR MaLR 261 505 0 204 170 57 19 chr12 140765890 140765943 -3516546 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 306 0 0 0 chr12 140765975 140766009 -3516480 + (CA)n Simple_repeat Simple_repeat 2 35 0 299 65 22 0 chr12 140766431 140766477 -3516012 + (CA)n Simple_repeat Simple_repeat 1 47 0 365 202 126 8 chr12 140766488 140766607 -3515882 + L2 LINE L2 3173 3305 -8 2454 52 41 0 chr12 140767571 140767861 -3514628 + AluY SINE Alu 1 302 -9 303 270 11 45 chr12 140768384 140768473 -3514016 - L2 LINE L2 -1 3271 3186 1757 125 10 20 chr12 140769019 140769314 -3513175 + L1PA14 LINE L1 5869 6160 -1 591 272 168 23 chr12 140769616 140770224 -3512265 - L2 LINE L2 -2 3311 2636 235 298 21 85 chr12 140770493 140770527 -3511962 - MIR SINE MIR -126 136 101 2248 123 0 0 chr12 140770527 140770827 -3511662 + AluSx SINE Alu 1 300 -12 235 298 21 85 chr12 140770827 140770933 -3511556 - MIR SINE MIR -161 101 5 285 295 18 45 chr12 140770980 140771092 -3511397 + MER102b DNA MER1_type 233 341 0 988 256 10 0 chr12 140771695 140771902 -3510587 - MER58B DNA MER1_type 0 341 133 286 224 17 0 chr12 140771900 140771958 -3510531 - MER58 DNA MER1_type -84 257 199 * 251 196 0 0 chr12 140772081 140772132 -3510357 + MIR SINE MIR 109 159 -103 4324 179 49 39 chr12 140772137 140773614 -3508875 + L1MA7 LINE L1 4801 6291 0 244 264 218 0 chr12 140773651 140773738 -3508751 + MIR SINE MIR 147 252 -10 1958 151 27 0 chr12 140773785 140774083 -3508406 - AluJb SINE Alu -6 306 1 2634 99 8 3 chr12 140774252 140774614 -3507875 - THE1B LTR MaLR 0 364 1 237 254 15 15 chr12 140776428 140776495 -3505994 + GA-rich Low_complexity Low_complexity 1 67 0 2050 210 13 0 chr12 140776719 140777110 -3505379 + MER57A LTR ERV1 8 403 0 6386 204 30 20 chr12 140777665 140779641 -3502848 + L1PA13 LINE L1 1532 3537 -3260 5804 118 14 11 chr12 140779643 140780835 -3501654 + L1PA15 LINE L1 4958 6151 -14 506 293 44 30 chr12 140781197 140781467 -3501022 - L1MC4 LINE L1 -598 7444 7171 187 338 78 36 chr12 140781551 140781770 -3500719 + L2 LINE L2 3044 3271 -1 1971 192 96 19 chr12 140781783 140782252 -3500237 + MLT1D LTR MaLR 1 505 0 2967 68 11 0 chr12 140782552 140782932 -3499557 + L1PA8 LINE L1 5784 6167 -5 597 259 21 36 chr12 140784005 140784198 -3498291 - MIR SINE MIR -57 205 16 1927 79 11 29 chr12 140785415 140785694 -3496795 - AluSc SINE Alu -13 296 23 754 238 188 34 chr12 140786281 140786722 -3495767 + LTR33A LTR ERVL 6 514 -9 22 35 0 0 chr12 140788254 140788283 -3494206 + AT_rich Low_complexity Low_complexity 1 29 0 1126 229 27 48 chr12 140789032 140789400 -3493089 - MSTD LTR MaLR 0 396 89 245 173 0 19 chr12 140789398 140789450 -3493039 - MSTD LTR MaLR -216 180 130 * 230 192 2 10 chr12 140789479 140789593 -3492896 - MSTB2 LTR MaLR -221 236 142 228 200 0 0 chr12 140789911 140789956 -3492533 - MSTD LTR MaLR -216 180 136 * 232 224 67 51 chr12 140789932 140790047 -3492442 - MSTD LTR MaLR -221 236 115 257 220 85 0 chr12 140790154 140790213 -3492276 - MSTD LTR MaLR -218 178 115 242 204 0 0 chr12 140790343 140790387 -3492102 - MSTD LTR MaLR -217 179 136 299 178 52 5 chr12 140790458 140790542 -3491947 - MSTD LTR MaLR -217 179 133 1040 197 23 3 chr12 140790678 140790896 -3491593 - MSTD LTR MaLR -217 179 1 543 326 127 61 chr12 140791558 140792284 -3490205 - L2 LINE L2 -573 2741 2064 1928 148 58 17 chr12 140792284 140792643 -3489846 - THE1C LTR MaLR -1 374 1 543 326 127 61 chr12 140792643 140793009 -3489480 - L2 LINE L2 -1250 2064 1724 1894 141 6 13 chr12 140793009 140793321 -3489168 + AluSx SINE Alu 1 310 -2 543 326 127 61 chr12 140793321 140793566 -3488923 - L2 LINE L2 -1590 1724 1315 1107 285 149 14 chr12 140793790 140794232 -3488257 + MLT1K LTR MaLR 78 579 -9 180 353 127 23 chr12 140794314 140794487 -3488002 - L2 LINE L2 -797 2517 2327 21 0 0 0 chr12 140794615 140794636 -3487853 + AT_rich Low_complexity Low_complexity 1 21 0 1828 173 33 46 chr12 140795590 140795984 -3486505 + MLT1B LTR MaLR 2 390 0 2046 176 84 0 chr12 140796032 140796425 -3486064 + MSTB LTR MaLR 1 426 0 931 267 68 34 chr12 140796900 140797282 -3485207 + LTR33 LTR ERVL 11 405 -116 2168 216 118 20 chr12 140797875 140798026 -3484463 + L1ME2 LINE L1 5434 5569 -595 2094 122 42 48 chr12 140798026 140798403 -3484086 - THE1C LTR MaLR 0 375 1 2168 216 118 20 chr12 140798403 140798903 -3483586 + L1ME2 LINE L1 5569 6149 -15 525 315 14 35 chr12 140799436 140799672 -3482817 - MIR SINE MIR 0 262 34 302 200 50 0 chr12 140799675 140799735 -3482754 - Charlie8 DNA MER1_type -1000 1417 1355 297 261 22 11 chr12 140799809 140799901 -3482588 - Charlie8 DNA MER1_type -2155 262 170 346 264 81 29 chr12 140799904 140800078 -3482411 - Charlie8 DNA MER1_type -2183 234 52 313 260 27 0 chr12 140800182 140800255 -3482234 - L1MC4 LINE L1 -1309 6733 6659 391 296 74 0 chr12 140800260 140800368 -3482121 + L1MC4 LINE L1 6614 6729 -1313 1941 141 13 0 chr12 140800418 140800717 -3481772 + AluSx SINE Alu 2 304 -8 23 0 0 0 chr12 140801314 140801337 -3481152 + AT_rich Low_complexity Low_complexity 1 23 0 1460 205 42 3 chr12 140801849 140802181 -3480308 - L1MB7 LINE L1 0 6184 5840 818 241 38 14 chr12 140802224 140802436 -3480053 - MER20 DNA MER1_type -2 217 1 275 321 67 15 chr12 140802460 140802594 -3479895 - MIR3 SINE MIR -49 159 19 905 251 0 16 chr12 140802667 140802854 -3479635 - MER5A DNA MER1_type -5 184 1 238 216 0 0 chr12 140802951 140803002 -3479487 + MLT1L LTR MaLR 341 391 -224 203 274 20 116 chr12 140803188 140803334 -3479155 + L2 LINE L2 3182 3313 0 10241 138 22 10 chr12 140803937 140804136 -3478353 - Tigger1 DNA MER2_type 0 2418 2223 1674 135 66 0 chr12 140804136 140804410 -3478079 + AluSx SINE Alu 1 292 -20 10241 138 22 10 chr12 140804410 140805831 -3476658 - Tigger1 DNA MER2_type -195 2223 779 11593 151 39 10 chr12 140805933 140807541 -3474948 - Tigger1 DNA MER2_type -348 2070 390 2243 91 7 0 chr12 140807541 140807838 -3474651 - AluSp SINE Alu -14 299 1 11593 151 39 10 chr12 140807838 140808213 -3474276 - Tigger1 DNA MER2_type -2028 390 28 4956 144 1 1 chr12 140809062 140809841 -3472648 - L1PA8A LINE L1 0 6131 5353 6495 87 12 0 chr12 140810127 140811336 -3471153 - L1PA8A LINE L1 0 6131 4917 212 290 140 27 chr12 140811348 140811534 -3470955 + MIR SINE MIR 10 216 -46 1082 167 0 25 chr12 140811545 140811743 -3470746 + AluSp SINE Alu 99 291 -22 443 222 48 92 chr12 140813259 140813466 -3469023 - L2 LINE L2 -13 3300 3103 1711 161 0 0 chr12 140813502 140813769 -3468720 + AluJo SINE Alu 1 267 -45 5607 80 12 12 chr12 140813793 140814553 -3467936 - L1PA11 LINE L1 -6 6168 5409 25 0 0 0 chr12 140814571 140814596 -3467893 + AT_rich Low_complexity Low_complexity 1 25 0 546 252 71 64 chr12 140814757 140815023 -3467466 + MLT1H LTR MaLR 13 280 -269 189 94 0 0 chr12 140815345 140815377 -3467112 + (T)n Simple_repeat Simple_repeat 1 32 0 2139 108 0 0 chr12 140815772 140816078 -3466411 + AluSx SINE Alu 1 306 -6 243 0 0 0 chr12 140816237 140816264 -3466225 + (GGA)n Simple_repeat Simple_repeat 1 27 0 644 301 190 25 chr12 140816482 140817137 -3465352 - L2 LINE L2 -5 3308 2535 536 320 119 54 chr12 140817121 140817752 -3464737 + L2 LINE L2 2301 2972 -342 * 233 288 17 0 chr12 140817969 140818028 -3464461 + L2 LINE L2 3183 3242 -30 1961 135 0 7 chr12 140818106 140818403 -3464086 + AluSx SINE Alu 1 295 -17 1266 258 9 9 chr12 140818484 140818802 -3463687 - MLT2D LTR ERVL -96 318 1 374 253 93 49 chr12 140818815 140818977 -3463512 - MLT1H1 LTR MaLR -2 553 385 388 315 37 12 chr12 140819618 140819780 -3462709 + Charlie8 DNA MER1_type 59 224 -2193 186 43 0 0 chr12 140821388 140821411 -3461078 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 230 36 91 18 chr12 140821558 140821613 -3460876 + T-rich Low_complexity Low_complexity 2 60 0 725 94 39 0 chr12 140821722 140821850 -3460639 + (TCTA)n Simple_repeat Simple_repeat 2 134 0 267 196 0 18 chr12 140872464 140872520 -3409969 + HERVK9 LTR ERVK 2140 2194 -3722 1243 269 51 60 chr12 140872717 140873527 -3408962 + HERVK9 LTR ERVK 2647 4238 -2548 452 289 47 28 chr12 140875123 140875376 -3407113 + HAL1 LINE L1 2244 2501 -6 203 32 65 0 chr12 140875536 140875567 -3406922 + T-rich Low_complexity Low_complexity 1 33 0 620 292 25 79 chr12 140876255 140876611 -3405878 - MLT1I LTR MaLR 0 409 73 957 176 21 27 chr12 140876773 140876961 -3405528 - MER20 DNA MER1_type -32 187 1 225 263 147 11 chr12 140877118 140877213 -3405276 - HAL1 LINE L1 -588 1919 1812 1417 132 19 0 chr12 140877472 140877685 -3404804 + AluSx SINE Alu 1 217 -95 22 0 0 0 chr12 140877704 140877726 -3404763 + AT_rich Low_complexity Low_complexity 1 22 0 549 279 42 38 chr12 140877846 140878083 -3404406 + MIR SINE MIR 1 238 -24 205 291 12 23 chr12 140878178 140878264 -3404225 + MIR SINE MIR 51 135 -73 781 276 22 0 chr12 140878304 140878536 -3403953 + MIR SINE MIR 24 260 -2 474 297 69 5 chr12 140879434 140879636 -3402853 - Charlie8 DNA MER1_type -2200 217 3 234 0 0 0 chr12 140880148 140880174 -3402315 + (TA)n Simple_repeat Simple_repeat 2 27 0 36 0 0 0 chr12 140880419 140880455 -3402034 + AT_rich Low_complexity Low_complexity 1 36 0 2999 47 3 0 chr12 140880455 140880817 -3401672 - L1PA5 LINE L1 -9 6145 5783 1506 221 21 24 chr12 140881196 140881571 -3400918 - L1MB8 LINE L1 -9 6169 5796 513 291 41 0 chr12 140881641 140881813 -3400676 + Charlie8 DNA MER1_type 12 190 -2227 456 290 139 13 chr12 140883469 140883707 -3398782 + L2 LINE L2 2181 2448 -866 307 285 15 36 chr12 140883946 140884083 -3398406 - MIR SINE MIR -101 161 28 863 294 103 3 chr12 140884144 140884464 -3398025 - L1ME3A LINE L1 -8 6162 5811 249 306 14 14 chr12 140885651 140885723 -3396766 - LTR67 LTR ERVL -372 185 114 1720 161 39 3 chr12 140885886 140886172 -3396317 - AluSx SINE Alu -16 296 1 194 291 165 38 chr12 140886217 140886375 -3396114 + MER5B DNA MER1_type 1 178 0 180 77 0 0 chr12 140886797 140886823 -3395666 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 304 237 243 33 chr12 140887066 140887218 -3395271 + MER5A DNA MER1_type 4 187 -2 2265 103 0 34 chr12 140887520 140887840 -3394649 - AluSq SINE Alu -4 309 1 247 326 22 0 chr12 140888701 140888836 -3393653 + (CCCTAA)n Simple_repeat Simple_repeat 3 140 0 5181 86 0 6 chr12 140889555 140890220 -3392269 - L1PA8 LINE L1 -4 6168 5508 368 255 11 0 chr12 140890333 140890427 -3392062 + MER5A DNA MER1_type 10 104 -85 683 124 117 0 chr12 140890718 140890861 -3391628 - L1PA16 LINE L1 -752 5394 5237 462 146 12 0 chr12 140890858 140890940 -3391549 + L1PA16 LINE L1 5409 5491 -674 * 995 126 0 0 chr12 140890940 140891075 -3391414 + AluSq/x SINE Alu 1 135 -177 1998 142 0 0 chr12 140891075 140891396 -3391093 + AluSx SINE Alu 1 321 0 4323 133 17 36 chr12 140891398 140892089 -3390400 + L1PA16 LINE L1 5488 6165 -1 417 255 103 109 chr12 140892496 140892766 -3389723 - MER113 DNA MER1_type? -49 472 202 2543 49 0 3 chr12 140892766 140893070 -3389419 + AluY SINE Alu 1 303 -8 417 255 103 109 chr12 140893070 140893159 -3389330 - MER113 DNA MER1_type? -319 202 114 1639 197 0 3 chr12 140893159 140893477 -3389012 + AluJo SINE Alu 1 317 0 417 255 103 109 chr12 140893477 140893589 -3388900 - MER113 DNA MER1_type? -407 114 1 252 0 0 0 chr12 140894195 140894223 -3388266 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 300 276 54 89 chr12 140897140 140897343 -3385146 - Charlie8 DNA MER1_type -2213 204 9 442 269 53 6 chr12 140898746 140898887 -3383602 + MLT2B1 LTR ERVL 353 489 -26 234 154 33 33 chr12 140898888 140898979 -3383510 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 256 136 91 0 chr12 140899004 140899048 -3383441 + MLT2C2 LTR ERVL 417 464 0 183 42 0 0 chr12 140899530 140899554 -3382935 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 27 29 0 0 chr12 140899569 140899603 -3382886 + AT_rich Low_complexity Low_complexity 1 34 0 837 274 29 64 chr12 140899864 140900283 -3382206 + LTR16A1 LTR ERVL 52 455 -2 240 170 0 0 chr12 140901245 140901298 -3381191 + (TTCA)n Simple_repeat Simple_repeat 3 55 0 311 303 8 25 chr12 140901302 140901421 -3381068 - L2 LINE L2 -3 3310 3194 1820 92 0 0 chr12 140901427 140901656 -3380833 - AluSx SINE Alu -83 229 1 247 263 188 23 chr12 140902058 140902191 -3380298 + MLT1J2 LTR MaLR 66 220 -335 2728 186 36 8 chr12 140902705 140903238 -3379251 + L1MB5 LINE L1 5619 6166 -8 2119 125 0 26 chr12 140903402 140903706 -3378783 + AluSx SINE Alu 1 296 -16 354 217 67 42 chr12 140904705 140904825 -3377664 + MLT1J2 LTR MaLR 15 137 -313 2164 230 105 28 chr12 140904851 140904931 -3377558 + L1MC4a LINE L1 6665 6737 -1071 2092 139 7 0 chr12 140904931 140905232 -3377257 + AluSx SINE Alu 1 303 -9 2164 230 105 28 chr12 140905232 140905648 -3376841 + L1MC4a LINE L1 6737 7222 -586 429 147 53 0 chr12 140905648 140905723 -3376766 + MADE1 DNA Mariner 1 79 -1 2164 230 105 28 chr12 140905723 140905911 -3376578 + L1MC4a LINE L1 7222 7394 -414 1494 228 3 0 chr12 140905918 140906221 -3376268 - L1MB1 LINE L1 -1199 4947 4644 4379 176 45 24 chr12 140906227 140906544 -3375945 + L1MB1 LINE L1 4926 5235 -933 207 100 0 0 chr12 140906544 140906574 -3375915 + (CAA)n Simple_repeat Simple_repeat 1 30 0 4379 176 45 24 chr12 140906574 140907426 -3375063 + L1MB1 LINE L1 5235 6154 -14 2429 96 0 0 chr12 140907426 140907738 -3374751 + AluSq SINE Alu 1 312 -1 278 277 69 0 chr12 140907799 140907900 -3374589 + L1MC4 LINE L1 7468 7575 -467 665 177 0 0 chr12 140907915 140908011 -3374478 + FLAM_A SINE Alu 21 116 -26 953 270 72 13 chr12 140908034 140908338 -3374151 + L1MC4a LINE L1 7487 7808 0 387 274 100 17 chr12 140908383 140908588 -3373901 + MLT1J2 LTR MaLR 238 409 0 3901 130 6 0 chr12 140911561 140912085 -3370404 - MER1A DNA MER1_type 0 527 1 547 278 70 59 chr12 140912559 140913002 -3369487 - HAL1 LINE L1 -1914 593 146 1107 207 78 19 chr12 140913075 140913331 -3369158 + MLT2D LTR ERVL 1 271 -143 1299 109 0 0 chr12 140913592 140913766 -3368723 - AluSq SINE Alu -10 303 130 253 215 0 15 chr12 140913796 140913826 -3368663 + (CA)n Simple_repeat Simple_repeat 2 31 -34 1344 184 97 28 chr12 140913826 140914146 -3368343 + MER2 DNA MER2_type 2 343 -1 253 215 0 15 chr12 140914146 140914180 -3368309 + (CA)n Simple_repeat Simple_repeat 31 65 0 317 241 0 19 chr12 140914181 140914289 -3368200 + (CATATA)n Simple_repeat Simple_repeat 1 106 0 350 89 0 0 chr12 140914290 140914338 -3368151 + MLT2C1 LTR ERVL 349 391 -6 275 239 0 14 chr12 140915526 140915597 -3366892 - LTR67 LTR ERVL -17 540 471 509 257 57 48 chr12 140915869 140916079 -3366410 - MLT1I LTR MaLR 0 409 198 2273 164 15 59 chr12 140916480 140916955 -3365534 - L1MA6 LINE L1 0 6300 5847 670 278 149 35 chr12 140917151 140917597 -3364892 + MLT1K LTR MaLR 48 588 -27 628 195 90 42 chr12 140918624 140918791 -3363698 - MLT1D LTR MaLR 0 555 317 698 279 75 27 chr12 140919006 140919300 -3363189 - MLT1D LTR MaLR -196 309 2 570 283 89 40 chr12 140919803 140920050 -3362439 - MIR SINE MIR -3 259 1 2246 99 10 0 chr12 140920277 140920579 -3361910 - AluSx SINE Alu -7 305 1 223 210 109 80 chr12 140921205 140921343 -3361146 + L2 LINE L2 2487 2628 -686 2625 180 23 49 chr12 140921798 140922326 -3360163 - MLT2B2 LTR ERVL -1 514 1 2118 126 20 0 chr12 140922827 140923128 -3359361 - AluSx SINE Alu -5 307 1 347 240 31 21 chr12 140923275 140923371 -3359118 + L2 LINE L2 3168 3264 -8 437 330 14 24 chr12 140923811 140924020 -3358469 + MIR SINE MIR 56 262 0 191 306 58 58 chr12 140924393 140924514 -3357975 - MIR SINE MIR -78 184 64 307 224 15 0 chr12 140924806 140924873 -3357616 - MER103 DNA DNA -77 89 22 450 295 100 57 chr12 140925653 140926281 -3356208 + L2 LINE L2 2324 3022 -250 234 229 66 0 chr12 140928519 140928580 -3353909 - LTR33 LTR ERVL -126 395 331 329 269 0 92 chr12 140928631 140928750 -3353739 - LTR33 LTR ERVL -305 216 109 1842 116 0 0 chr12 140929126 140929394 -3353095 + AluY SINE Alu 44 311 0 938 318 74 49 chr12 140929605 140930579 -3351910 - L2 LINE L2 -5 3308 2309 184 254 141 14 chr12 140930551 140930622 -3351867 + L3 LINE CR1 427 506 -1071 * 1247 91 0 6 chr12 140930724 140930900 -3351589 - AluY SINE Alu 0 311 137 268 214 0 128 chr12 140930916 140931033 -3351456 - L2 LINE L2 -75 3238 3137 * 777 282 190 3 chr12 140931026 140931331 -3351158 - L2 LINE L2 -717 2597 2236 13938 182 23 5 chr12 140931340 140933027 -3349462 - L1PB1 LINE L1 -3 6864 5208 300 53 0 0 chr12 140933027 140933065 -3349424 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 13938 182 23 5 chr12 140933065 140936783 -3345706 - L1PB1 LINE L1 -1659 5208 1298 2703 243 104 5 chr12 140936822 140936951 -3345538 - L1PB1 LINE L1 -5821 1042 927 198 0 0 0 chr12 140936951 140936973 -3345516 + (CTG)n Simple_repeat Simple_repeat 2 23 0 2703 243 104 5 chr12 140936973 140937666 -3344823 - L1PB1 LINE L1 -5936 927 138 489 350 88 15 chr12 140937708 140937982 -3344507 - L2 LINE L2 -1075 2239 1946 * 645 345 52 26 chr12 140937941 140938405 -3344084 + L3 LINE CR1 628 1103 -474 371 362 56 53 chr12 140938668 140939082 -3343407 - L2 LINE L2 -448 2866 2452 264 59 0 0 chr12 140939132 140939166 -3343323 + (CCTA)n Simple_repeat Simple_repeat 2 35 0 257 405 9 26 chr12 140939284 140939400 -3343089 + L3 LINE CR1 1411 1524 -53 2531 43 0 10 chr12 140939724 140940025 -3342464 - AluY SINE Alu -13 298 1 239 278 56 28 chr12 140940198 140940270 -3342219 + MIR SINE MIR 70 143 -119 243 269 250 28 chr12 140940442 140940550 -3341939 + MIR SINE MIR 12 143 -119 2142 114 3 3 chr12 140942714 140943011 -3339478 + AluSg1 SINE Alu 1 297 -12 479 263 35 29 chr12 140943092 140943263 -3339226 - MIR SINE MIR -13 249 78 291 322 163 30 chr12 140943301 140943571 -3338918 - L2 LINE L2 0 3313 3008 1163 224 75 25 chr12 140944532 140944853 -3337636 + MER58B DNA MER1_type 3 339 -2 1212 233 16 46 chr12 140944856 140945229 -3337260 - MER20B DNA MER1_type -5 778 417 537 274 6 12 chr12 140945324 140945488 -3337001 - LTR33 LTR ERVL -355 166 4 762 219 86 11 chr12 140945548 140945735 -3336754 - MER3 DNA MER1_type -5 204 4 786 275 116 51 chr12 140945772 140946407 -3336082 + L2 LINE L2 2483 3169 -144 573 290 54 10 chr12 140946942 140947149 -3335340 + MIR SINE MIR 6 213 -49 187 122 41 0 chr12 140947165 140947214 -3335275 + (TA)n Simple_repeat Simple_repeat 2 52 0 187 264 19 0 chr12 140947869 140947922 -3334567 - L2 LINE L2 -13 3259 3206 2344 126 26 100 chr12 140948537 140948999 -3333490 + MSTC LTR MaLR 1 428 0 944 148 7 0 chr12 140950094 140950236 -3332253 + AluSq/x SINE Alu 1 143 -169 22 35 0 0 chr12 140950527 140950556 -3331933 + AT_rich Low_complexity Low_complexity 1 29 0 974 188 24 19 chr12 140950991 140951204 -3331285 + L1MB2 LINE L1 5957 6170 -1 540 270 103 15 chr12 140951288 140951588 -3330901 + L1ME LINE L1 5403 5729 -392 230 309 25 0 chr12 140951642 140951723 -3330766 + L2 LINE L2 2434 2516 -798 263 297 27 18 chr12 140951834 140951945 -3330544 + MLT1J LTR MaLR 75 186 -325 24 0 0 29 chr12 140951982 140952004 -3330485 + AT_rich Low_complexity Low_complexity 1 23 -11 2160 138 3 0 chr12 140952004 140952315 -3330174 + AluSx SINE Alu 1 312 0 24 0 0 29 chr12 140952315 140952327 -3330162 + AT_rich Low_complexity Low_complexity 23 34 0 290 313 10 0 chr12 140952356 140952455 -3330034 - L1ME LINE L1 -538 5583 5484 1720 127 88 0 chr12 140952769 140953054 -3329435 - AluSx SINE Alu 0 308 1 419 252 100 27 chr12 140953240 140953292 -3329197 - MIR SINE MIR -4 258 211 2029 148 0 19 chr12 140953292 140953602 -3328887 - AluSx SINE Alu -8 304 1 419 252 100 27 chr12 140953602 140953729 -3328760 - MIR SINE MIR -51 211 71 225 195 24 0 chr12 140953813 140953854 -3328635 + MIR SINE MIR 108 149 -59 903 263 20 81 chr12 140953937 140954294 -3328195 + MLT1J LTR MaLR 100 434 -77 2011 119 24 3 chr12 140954460 140954753 -3327736 + AluSg SINE Alu 1 299 -11 348 24 0 0 chr12 140955597 140955638 -3326851 + (CA)n Simple_repeat Simple_repeat 2 42 0 242 216 14 0 chr12 140957111 140957185 -3325304 + GA-rich Low_complexity Low_complexity 2 76 0 1527 173 16 0 chr12 140957211 140957460 -3325029 + AluSx SINE Alu 59 311 -1 231 204 0 0 chr12 140957464 140957513 -3324976 + GA-rich Low_complexity Low_complexity 2 50 0 3822 86 0 24 chr12 140958472 140958982 -3323507 - L1PA5 LINE L1 0 6154 5657 255 330 54 27 chr12 140959530 140959642 -3322847 - MER5B DNA MER1_type 0 178 64 3136 91 59 131 chr12 140959642 140959894 -3322595 + MER41C LTR ERV1 2 271 -283 9823 25 1 0 chr12 140959894 140961750 -3320739 + L1PA4 LINE L1 4295 6152 -3 3136 91 59 131 chr12 140961750 140961795 -3320694 + MER41C LTR ERV1 271 318 -236 1872 100 19 97 chr12 140961795 140962116 -3320373 + AluSx SINE Alu 2 297 -15 3136 91 59 131 chr12 140962116 140962413 -3320076 + MER41C LTR ERV1 318 554 0 8641 124 42 15 chr12 140962501 140963876 -3318613 + MER41C-int LTR ERV1 4 1415 -6341 5772 99 4 2 chr12 140963876 140964713 -3317776 - L1P LINE L1 -2269 3877 3040 9880 88 7 1 chr12 140964713 140966898 -3315591 + L1PA8 LINE L1 3980 6172 0 3231 94 70 0 chr12 140966901 140967357 -3315132 + MER41C-int LTR ERV1 2568 3055 -4701 1643 112 0 9 chr12 140967352 140967584 -3314905 + MER41C-int LTR ERV1 4394 4623 -3133 * 18883 103 8 9 chr12 140967584 140970201 -3312288 + MER41C-int LTR ERV1 5141 7756 0 2701 110 93 0 chr12 140970201 140970610 -3311879 + MER41C LTR ERV1 1 447 -107 3417 69 0 0 chr12 140970616 140971109 -3311380 + L1P3 LINE L1 5183 5675 -497 844 102 0 0 chr12 140971109 140971227 -3311262 + MER41A LTR ERV1 436 553 -1 321 68 0 0 chr12 140971253 140971297 -3311192 + (TCCC)n Simple_repeat Simple_repeat 4 47 0 186 43 0 0 chr12 140972481 140972504 -3309985 + (TA)n Simple_repeat Simple_repeat 2 24 0 2200 109 0 0 chr12 140972504 140972787 -3309702 - AluSg SINE Alu -27 283 1 579 326 11 11 chr12 140972787 140972977 -3309512 - MIR SINE MIR -14 248 59 184 313 16 0 chr12 140974109 140974173 -3308316 + L2 LINE L2 2550 2614 -700 203 308 31 46 chr12 140974192 140974322 -3308167 + L2 LINE L2 3103 3230 -83 332 233 14 0 chr12 140974826 140974899 -3307590 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 533 248 7 39 chr12 140975040 140975193 -3307296 + MER5B DNA MER1_type 2 149 -29 741 236 23 0 chr12 140975198 140975372 -3307117 - MER5B DNA MER1_type 0 178 1 1651 158 52 83 chr12 140975821 140976208 -3306281 - THE1C LTR MaLR 0 375 1 213 39 0 0 chr12 140976464 140976490 -3305999 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr12 140976762 140976794 -3305695 + AT_rich Low_complexity Low_complexity 1 32 0 1228 128 0 0 chr12 140976794 140976966 -3305523 - AluSq SINE Alu -8 305 134 274 207 37 12 chr12 140978320 140978402 -3304087 - L1MB7 LINE L1 -8 6176 6093 1709 228 93 8 chr12 140978457 140978940 -3303549 - L1ME1 LINE L1 -72 6094 5571 * 5188 170 26 28 chr12 140978937 140979278 -3303211 - L1 LINE L1 -1415 4731 4391 405 58 0 0 chr12 140979278 140979330 -3303159 + (TG)n Simple_repeat Simple_repeat 1 52 0 207 0 0 0 chr12 140979329 140979352 -3303137 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 5188 170 26 28 chr12 140979330 140979408 -3303081 - L1 LINE L1 -1755 4391 4314 2405 104 0 0 chr12 140979408 140979716 -3302773 + AluSg SINE Alu 1 308 -2 5188 170 26 28 chr12 140979716 140980372 -3302117 - L1 LINE L1 -1832 4314 3679 1036 235 52 54 chr12 140980554 140980870 -3301619 - L1 LINE L1 -3135 3011 2695 1565 106 0 5 chr12 140980870 140981078 -3301411 + AluSq SINE Alu 1 207 -106 1036 235 52 54 chr12 140981078 140981148 -3301341 - L1 LINE L1 -3451 2695 2626 5021 175 13 21 chr12 140981490 140982414 -3300075 - L1MB2 LINE L1 -1 6170 5254 913 209 5 10 chr12 140982436 140982632 -3299857 - L1MB2 LINE L1 -1048 5098 4904 1338 259 82 14 chr12 140982641 140983069 -3299420 + MLT1C LTR MaLR 11 467 0 256 275 12 12 chr12 140983128 140983208 -3299281 - MLT1L LTR MaLR -532 83 4 390 236 65 16 chr12 140983250 140983373 -3299116 - L1ME4a LINE L1 -14 6107 5979 328 311 48 90 chr12 140983890 140984244 -3298245 + L2 LINE L2 2302 2640 -674 234 91 0 0 chr12 140984324 140984357 -3298132 + (A)n Simple_repeat Simple_repeat 1 33 0 659 159 15 8 chr12 140984377 140984509 -3297980 + L1 LINE L1 5183 5315 -831 719 303 64 57 chr12 140984531 140985045 -3297444 + L2 LINE L2 2795 3310 -3 385 252 6 38 chr12 140985534 140985693 -3296796 - L1 LINE L1 -3748 2398 2245 189 74 0 0 chr12 140986528 140986555 -3295934 + (TTA)n Simple_repeat Simple_repeat 3 29 0 2676 36 0 3 chr12 140987275 140987578 -3294911 + AluY SINE Alu 1 302 -9 1461 110 0 0 chr12 140988104 140988295 -3294194 - AluSx SINE Alu -121 191 1 2409 191 47 11 chr12 140988392 140988930 -3293559 - L1MC2 LINE L1 -153 6191 5645 653 281 57 44 chr12 140989136 140989453 -3293036 + MER102b DNA MER1_type 11 331 -10 2083 137 0 32 chr12 140989828 140990142 -3292347 + AluSx SINE Alu 1 304 -8 28 29 0 0 chr12 140991219 140991254 -3291235 + AT_rich Low_complexity Low_complexity 1 35 0 2258 123 57 8 chr12 140991913 140992279 -3290210 - L1PA13 LINE L1 -2 6161 5778 849 85 115 0 chr12 140992281 140992411 -3290078 + L1PA13 LINE L1 5643 5787 -376 237 108 0 0 chr12 140992893 140992930 -3289559 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 419 295 8 16 chr12 140993026 140993155 -3289334 - LTR67 LTR ERVL -2 555 428 266 262 59 107 chr12 140993165 140993604 -3288885 - LTR33 LTR ERVL 0 521 104 264 161 0 81 chr12 140993723 140993785 -3288704 + MARNA DNA Mariner 141 197 -389 2069 133 3 7 chr12 140994435 140994743 -3287746 + AluSx SINE Alu 5 311 -1 801 297 60 42 chr12 140995026 140995427 -3287062 + MLT1J2 LTR MaLR 39 446 -4 5856 32 1 1 chr12 140995871 140996562 -3285927 + L1PA4 LINE L1 5465 6155 0 26 0 0 0 chr12 140996562 140996588 -3285901 + AT_rich Low_complexity Low_complexity 1 26 0 894 154 24 0 chr12 140997549 140997718 -3284771 + L1MA4 LINE L1 6124 6296 -4 622 240 83 9 chr12 140997770 140997999 -3284490 + MIR SINE MIR 9 254 -8 2560 129 43 24 chr12 140998238 140998658 -3283831 + MSTA LTR MaLR 1 428 0 389 253 105 37 chr12 140998658 140998842 -3283647 - MLT1K LTR MaLR -10 578 382 411 187 90 22 chr12 140998845 140998979 -3283510 + MER53 DNA DNA 3 145 -44 861 92 0 0 chr12 140999451 140999560 -3282929 - AluSg/x SINE Alu -24 288 180 2090 134 0 3 chr12 140999782 141000081 -3282408 - AluSx SINE Alu -14 298 1 1073 79 0 29 chr12 141000081 141000220 -3282269 - AluSq/x SINE Alu -178 135 1 2627 58 0 10 chr12 141000556 141000868 -3281621 - AluY SINE Alu -2 309 1 665 304 98 53 chr12 141000958 141001376 -3281113 + MLT1K LTR MaLR 134 570 -18 412 310 38 33 chr12 141001445 141001629 -3280860 + MIR SINE MIR 34 218 -44 238 283 156 40 chr12 141002066 141002239 -3280250 - L2 LINE L2 -34 3279 3087 547 279 166 26 chr12 141002241 141002585 -3279904 - LTR16A1 LTR ERVL 0 457 66 1024 305 145 47 chr12 141002665 141003877 -3278612 - L2 LINE L2 -281 3032 1697 4231 107 10 5 chr12 141003878 141004505 -3277984 - L1PB2 LINE L1 0 6151 5522 2153 159 18 26 chr12 141004533 141004574 -3277915 - MLT1B LTR MaLR -2 388 348 2562 112 5 14 chr12 141004574 141004941 -3277548 + THE1B LTR MaLR 1 364 0 2153 159 18 26 chr12 141004941 141005290 -3277199 - MLT1B LTR MaLR -42 348 1 192 255 123 38 chr12 141005314 141005420 -3277069 - L2 LINE L2 -1664 1650 1536 590 306 89 45 chr12 141005772 141006086 -3276403 - MER102a DNA MER1_type 0 330 3 676 255 109 57 chr12 141006213 141006581 -3275908 + LTR33 LTR ERVL 2 388 -133 556 273 20 13 chr12 141006739 141006889 -3275600 - MIR SINE MIR -102 160 10 210 143 29 0 chr12 141006990 141007025 -3275464 + GA-rich Low_complexity Low_complexity 4 39 0 825 283 85 40 chr12 141007213 141007470 -3275019 - MLT1K LTR MaLR 0 588 344 2075 131 0 0 chr12 141007470 141007761 -3274728 + AluJb SINE Alu 5 295 -17 4479 117 6 0 chr12 141007770 141008431 -3274058 + L1PB1 LINE L1 5485 6149 -2 825 283 85 40 chr12 141008431 141008644 -3273845 - MLT1K LTR MaLR -251 337 86 683 288 155 27 chr12 141008946 141009391 -3273098 + L2 LINE L2 2812 3313 0 521 302 94 18 chr12 141009393 141009724 -3272765 + L2 LINE L2 1825 2180 -1134 452 244 15 8 chr12 141009724 141009988 -3272501 + CT-rich Low_complexity Low_complexity 1 266 0 570 329 86 23 chr12 141010105 141010534 -3271955 + L2 LINE L2 2484 2939 -375 10368 40 19 1 chr12 141010548 141012531 -3269958 + L1PA4 LINE L1 4145 6144 -11 211 225 28 0 chr12 141012713 141012784 -3269705 + CT-rich Low_complexity Low_complexity 4 76 0 336 318 87 8 chr12 141012784 141012910 -3269579 + L2 LINE L2 3137 3272 0 296 306 17 28 chr12 141014542 141014722 -3267767 + (CCCCAA)n Simple_repeat Simple_repeat 3 180 0 * 334 354 0 6 chr12 141014700 141014881 -3267608 + (CCA)n Simple_repeat Simple_repeat 1 180 0 292 267 11 0 chr12 141015069 141015159 -3267330 + (TAA)n Simple_repeat Simple_repeat 2 92 0 260 337 0 27 chr12 141015173 141015357 -3267132 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 205 368 6 6 chr12 141015360 141015526 -3266963 + (TAA)n Simple_repeat Simple_repeat 1 166 0 200 350 0 22 chr12 141016027 141016210 -3266279 + (TAA)n Simple_repeat Simple_repeat 1 179 0 236 350 0 22 chr12 141016246 141016429 -3266060 + (TAA)n Simple_repeat Simple_repeat 1 179 0 236 348 0 22 chr12 141016578 141016762 -3265727 + (TAA)n Simple_repeat Simple_repeat 1 180 0 349 325 6 6 chr12 141017298 141017508 -3264981 + (CCCCAA)n Simple_repeat Simple_repeat 1 210 0 383 344 18 0 chr12 141017624 141017787 -3264702 - MIR SINE MIR -63 199 34 690 286 21 0 chr12 141018051 141018243 -3264246 + MER58A DNA MER1_type 1 196 -28 307 293 0 20 chr12 141018395 141018494 -3263995 - MLT1K LTR MaLR -37 551 455 272 254 83 71 chr12 141018683 141018923 -3263566 + MIR SINE MIR 19 261 -1 222 230 135 0 chr12 141019120 141019194 -3263295 - MIR SINE MIR -11 251 168 272 250 204 15 chr12 141019212 141019344 -3263145 + L1MEd LINE L1 1074 1230 -4889 395 214 0 129 chr12 141019490 141019630 -3262859 - MER5B DNA MER1_type 0 178 57 2386 96 0 0 chr12 141019632 141019933 -3262556 - AluSx SINE Alu -11 301 1 2303 95 3 3 chr12 141019939 141020234 -3262255 - AluSp SINE Alu -18 295 1 387 284 27 7 chr12 141020442 141020590 -3261899 + MER5A DNA MER1_type 1 151 -38 254 357 21 47 chr12 141020805 141021040 -3261449 - Charlie8 DNA MER1_type -2159 258 30 236 98 0 24 chr12 141021151 141021192 -3261297 + (TGAG)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr12 141021866 141021890 -3260599 + AT_rich Low_complexity Low_complexity 1 24 0 1004 233 59 7 chr12 141022616 141022886 -3259603 + L1MB8 LINE L1 5894 6177 -1 386 304 92 5 chr12 141023031 141023238 -3259251 + L1ME LINE L1 5428 5652 -518 227 246 58 0 chr12 141023367 141023436 -3259053 + L1ME LINE L1 5679 5751 -370 362 209 7 0 chr12 141023556 141023695 -3258794 + (TA)n Simple_repeat Simple_repeat 1 140 0 288 119 68 26 chr12 141023746 141023983 -3258506 + (TA)n Simple_repeat Simple_repeat 1 247 0 330 274 82 37 chr12 141024263 141024398 -3258091 + MLT1J LTR MaLR 129 269 -242 272 350 10 0 chr12 141025915 141026012 -3256477 - L2 LINE L2 -5 3267 3170 808 251 130 45 chr12 141026018 141026373 -3256116 - MLT1L LTR MaLR -12 603 219 420 20 0 0 chr12 141026707 141026756 -3255733 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 1229 214 32 32 chr12 141026761 141027042 -3255447 - MSTD LTR MaLR 0 396 116 235 200 67 67 chr12 141027047 141027122 -3255367 - MSTD LTR MaLR -206 190 116 * 242 159 0 0 chr12 141027121 141027165 -3255324 - MSTD LTR MaLR -217 179 136 240 159 0 0 chr12 141027221 141027265 -3255224 - MSTD LTR MaLR -217 179 136 * 976 208 8 17 chr12 141027247 141027477 -3255012 - MSTD LTR MaLR -217 179 3 213 39 0 0 chr12 141027745 141027771 -3254718 + (TG)n Simple_repeat Simple_repeat 1 26 0 1591 60 0 15 chr12 141028229 141028429 -3254060 - MER107 DNA MER1_type 0 197 1 1864 176 0 7 chr12 141029164 141029470 -3253019 + AluJb SINE Alu 5 308 -4 585 257 78 10 chr12 141029473 141029669 -3252820 - MIR SINE MIR -52 210 3 898 144 0 0 chr12 141030444 141030576 -3251913 - FRAM SINE Alu -9 167 36 730 248 64 25 chr12 141031643 141031990 -3250499 - L2 LINE L2 -208 3105 2736 2080 143 48 80 chr12 141032024 141032066 -3250423 - MSTB LTR MaLR -1 425 383 2106 114 7 0 chr12 141032066 141032373 -3250116 - AluSx SINE Alu 0 309 1 2080 143 48 80 chr12 141032373 141032768 -3249721 - MSTB LTR MaLR -43 383 1 1557 214 30 11 chr12 141032962 141033326 -3249163 - MLT1A2 LTR MaLR -2 372 2 294 297 23 16 chr12 141034126 141034215 -3248274 + (CATATA)n Simple_repeat Simple_repeat 5 97 -36 2378 88 0 0 chr12 141034215 141034512 -3247977 + AluY SINE Alu 1 297 -14 294 297 23 16 chr12 141034512 141034550 -3247939 + (CATATA)n Simple_repeat Simple_repeat 97 133 0 2290 57 57 0 chr12 141035499 141035780 -3246709 + AluY SINE Alu 1 297 -14 2356 99 0 6 chr12 141036793 141037107 -3245382 - AluSx SINE Alu 0 312 1 509 309 57 0 chr12 141037931 141038125 -3244364 + MER3 DNA MER1_type 5 209 0 453 145 0 0 chr12 141038153 141038222 -3244267 - THE1C LTR MaLR 0 375 307 243 0 0 0 chr12 141038224 141038251 -3244238 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2134 103 0 11 chr12 141038253 141038535 -3243954 - AluSg SINE Alu -31 279 1 351 122 89 67 chr12 141038620 141038710 -3243779 - L1PA12 LINE L1 0 6168 6077 342 0 0 0 chr12 141038840 141038878 -3243611 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1092 164 44 0 chr12 141038880 141039063 -3243426 + AluJb SINE Alu 121 311 -1 345 159 0 0 chr12 141039075 141039138 -3243351 + GA-rich Low_complexity Low_complexity 5 67 0 2342 108 0 3 chr12 141039142 141039449 -3243040 + AluY SINE Alu 1 306 -5 700 193 23 0 chr12 141039449 141039625 -3242864 + GA-rich Low_complexity Low_complexity 1 180 0 576 136 20 27 chr12 141039649 141039796 -3242693 + GA-rich Low_complexity Low_complexity 2 147 0 233 119 24 0 chr12 141039831 141039873 -3242616 + GA-rich Low_complexity Low_complexity 1 43 0 733 217 13 20 chr12 141040570 141040722 -3241767 - MER63A DNA MER1_type -25 185 35 1934 178 66 23 chr12 141041148 141041587 -3240902 + L1MB4 LINE L1 5694 6151 -29 623 268 148 0 chr12 141041636 141041819 -3240670 + MER58C DNA MER1_type 6 215 0 305 143 193 92 chr12 141041819 141041938 -3240551 - MER20B DNA MER1_type -138 645 515 278 302 39 34 chr12 141042218 141042397 -3240092 - MER20B DNA MER1_type -561 222 43 23 0 0 0 chr12 141044737 141044760 -3237729 + AT_rich Low_complexity Low_complexity 1 23 0 249 309 107 13 chr12 141046305 141046454 -3236035 + MIR SINE MIR 2 164 -98 450 226 104 0 chr12 141046477 141046592 -3235897 - MER91C DNA MER1_type -12 128 2 229 289 108 0 chr12 141046916 141046999 -3235490 - L2 LINE L2 -43 3270 3179 610 255 98 78 chr12 141047657 141048087 -3234402 - LTR16A LTR ERVL -1 456 13 50 65 0 0 chr12 141048210 141048302 -3234187 + AT_rich Low_complexity Low_complexity 1 92 0 2901 129 5 0 chr12 141048374 141048799 -3233690 + MSTA LTR MaLR 1 427 -1 249 288 15 0 chr12 141049406 141049472 -3233017 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 304 176 56 56 chr12 141049804 141049912 -3232577 + MLT1K LTR MaLR 395 502 -86 2009 151 0 22 chr12 141049951 141050270 -3232219 - AluSx SINE Alu 0 312 1 235 327 19 9 chr12 141050407 141050514 -3231975 + (TA)n Simple_repeat Simple_repeat 2 109 0 194 189 0 19 chr12 141050691 141050744 -3231745 + CT-rich Low_complexity Low_complexity 2 53 0 21 0 0 0 chr12 141050755 141050776 -3231713 + AT_rich Low_complexity Low_complexity 1 21 0 400 267 114 89 chr12 141050875 141051268 -3231221 + MLT1J LTR MaLR 25 427 -84 535 265 69 76 chr12 141052084 141052375 -3230114 - MER102b DNA MER1_type -1 340 52 2819 161 55 7 chr12 141052776 141053335 -3229154 + L1MA4 LINE L1 5710 6295 -5 245 234 0 0 chr12 141053412 141053459 -3229030 + (TGG)n Simple_repeat Simple_repeat 3 49 0 834 180 10 5 chr12 141053463 141053875 -3228614 + (ATG)n Simple_repeat Simple_repeat 1 414 0 180 111 0 0 chr12 141053875 141053902 -3228587 + (ATGGTG)n Simple_repeat Simple_repeat 3 29 0 1069 161 11 0 chr12 141054134 141054308 -3228181 + MLT2B2 LTR ERVL 1 176 -339 819 222 11 23 chr12 141054281 141054455 -3228034 + MLT1D LTR MaLR 286 457 -48 1043 206 0 32 chr12 141054455 141054644 -3227845 + Charlie3 DNA MER1_type 1 183 -2527 1953 196 22 89 chr12 141054644 141055148 -3227341 + MER1A DNA MER1_type 60 529 0 22 0 0 0 chr12 141055486 141055508 -3226981 + GC_rich Low_complexity Low_complexity 1 22 0 185 94 31 0 chr12 141055637 141055669 -3226820 + (ATG)n Simple_repeat Simple_repeat 1 33 0 1069 161 11 0 chr12 141055902 141056076 -3226413 + MLT2B2 LTR ERVL 1 176 -339 819 222 11 23 chr12 141056049 141056223 -3226266 + MLT1D LTR MaLR 286 457 -48 1043 206 0 32 chr12 141056223 141056412 -3226077 + Charlie3 DNA MER1_type 1 183 -2527 2295 118 12 59 chr12 141056412 141056916 -3225573 + MER1A DNA MER1_type 60 529 0 280 143 82 0 chr12 141056916 141056960 -3225529 + MLT1D LTR MaLR 450 497 -8 2393 60 3 0 chr12 141057296 141057625 -3224864 + AluY SINE Alu 1 330 0 1115 249 89 20 chr12 141058033 141058215 -3224274 - MLT1A2 LTR MaLR 0 374 206 243 0 0 0 chr12 141058215 141058242 -3224247 + (GA)n Simple_repeat Simple_repeat 2 28 0 1115 249 89 20 chr12 141058242 141058409 -3224080 - MLT1A2 LTR MaLR -168 206 1 546 222 44 56 chr12 141059310 141059490 -3222999 - MER5B DNA MER1_type 0 178 1 335 247 17 107 chr12 141059584 141059762 -3222727 - MER5B DNA MER1_type 0 178 17 432 298 36 18 chr12 141059774 141059942 -3222547 - MER5B DNA MER1_type -2 176 6 2516 119 11 16 chr12 141060140 141060517 -3221972 - THE1C LTR MaLR 0 375 1 465 180 60 0 chr12 141060522 141060622 -3221867 + MLT1B LTR MaLR 29 134 -256 1108 255 19 11 chr12 141060731 141061055 -3221434 + MER93b LTR ERV1 61 373 0 1459 175 4 4 chr12 141061056 141061313 -3221176 + MLT1B LTR MaLR 134 390 0 204 40 0 0 chr12 141063294 141063319 -3219170 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 1286 281 93 21 chr12 141063535 141064105 -3218384 + HsTC2a DNA Tc2 134 744 0 2140 224 37 15 chr12 141064307 141064506 -3217983 - L1MD2 LINE L1 -2 6357 6164 213 39 0 0 chr12 141064506 141064532 -3217957 + (TG)n Simple_repeat Simple_repeat 1 26 0 2140 224 37 15 chr12 141064532 141064871 -3217618 - L1MD2 LINE L1 -195 6164 5807 307 285 15 36 chr12 141065463 141065600 -3216889 - MIR SINE MIR -101 161 28 224 57 0 29 chr12 141065628 141065663 -3216826 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1455 179 6 69 chr12 141065811 141066146 -3216343 + L1MA9 LINE L1 5946 6259 -53 297 109 0 0 chr12 141066203 141066249 -3216240 + L1MA9 LINE L1 6262 6307 -5 217 322 138 6 chr12 141066353 141066527 -3215962 - L2 LINE L2 0 3313 3117 2203 146 30 30 chr12 141067198 141067562 -3214927 - THE1B LTR MaLR 0 364 1 2106 114 14 0 chr12 141067835 141068116 -3214373 - AluSq SINE Alu -28 285 1 1754 153 57 7 chr12 141069036 141069318 -3213171 + AluJo SINE Alu 1 296 -16 445 305 46 46 chr12 141069372 141069657 -3212832 + L1M4 LINE L1 4066 4350 -1796 956 148 7 0 chr12 141070093 141070235 -3212254 + AluSq/x SINE Alu 1 143 -169 1924 158 6 6 chr12 141070324 141070653 -3211836 + L1PB1 LINE L1 5820 6148 -3 687 282 190 3 chr12 141070662 141070967 -3211522 + L2 LINE L2 2236 2597 -717 6598 129 2 2 chr12 141071631 141072630 -3209859 - L1P LINE L1 -1155 4991 3993 313 208 28 9 chr12 141072631 141072737 -3209752 + G-rich Low_complexity Low_complexity 2 109 0 224 266 11 38 chr12 141072783 141072967 -3209522 + (CGGG)n Simple_repeat Simple_repeat 1 179 0 2592 22 0 19 chr12 141073175 141073489 -3209000 + AluYa5 SINE Alu 1 308 -3 520 272 56 56 chr12 141073497 141073874 -3208615 - LTR16A1 LTR ERVL -13 478 86 551 278 21 7 chr12 141075003 141075147 -3207342 + MIR SINE MIR 15 160 -102 646 255 85 60 chr12 141075305 141075658 -3206831 - LTR33 LTR ERVL -133 388 27 7631 22 4 1 chr12 141126174 141127177 -3155312 - L1PA4 LINE L1 -33 6122 5118 279 226 128 10 chr12 141127404 141127506 -3154983 + MER95 LTR ERV 318 431 0 615 172 0 10 chr12 141127507 141127606 -3154883 - MER20 DNA MER1_type -79 140 43 2400 89 0 3 chr12 141127929 141128231 -3154258 + AluY SINE Alu 1 301 -10 237 33 0 0 chr12 141128256 141128286 -3154203 + (GA)n Simple_repeat Simple_repeat 2 31 0 3088 167 56 14 chr12 141128286 141128860 -3153629 - MER7C DNA MER2_type -3 599 2 307 298 53 0 chr12 141129284 141129398 -3153091 - MIR SINE MIR -89 173 54 201 240 0 0 chr12 141129631 141129681 -3152808 + (CAGAGA)n Simple_repeat Simple_repeat 6 55 0 25 0 0 0 chr12 141130577 141130602 -3151887 + AT_rich Low_complexity Low_complexity 1 25 0 237 193 22 138 chr12 141131066 141131247 -3151242 - L2 LINE L2 -71 3242 3083 806 293 67 6 chr12 141131491 141131850 -3150639 - L2 LINE L2 -337 2977 2597 293 307 0 0 chr12 141132054 141132142 -3150347 + L1ME3A LINE L1 5464 5551 -615 353 330 43 17 chr12 141132168 141132401 -3150088 + L1ME3A LINE L1 5614 5852 -318 183 80 0 0 chr12 141132531 141132556 -3149933 + (A)n Simple_repeat Simple_repeat 1 25 0 1525 165 88 7 chr12 141132559 141132832 -3149657 + AluJb SINE Alu 2 296 -16 421 310 60 12 chr12 141132845 141133173 -3149316 + L1ME4a LINE L1 5299 5629 -492 290 202 289 46 chr12 141133348 141133566 -3148923 + MLT1G3 LTR MaLR 174 444 -86 420 264 28 57 chr12 141133566 141133900 -3148589 + L1ME4a LINE L1 5696 6026 -95 324 0 0 0 chr12 141134299 141134335 -3148154 + (TG)n Simple_repeat Simple_repeat 1 36 0 498 268 83 6 chr12 141134602 141134759 -3147730 - MER5B DNA MER1_type -2 176 8 2023 133 7 0 chr12 141135317 141135603 -3146886 - AluSx SINE Alu -16 296 9 257 273 15 0 chr12 141136312 141136378 -3146111 + MER115 DNA AcHobo 117 183 -510 957 309 49 14 chr12 141136385 141136831 -3145658 - LTR16C LTR ERVL -27 464 3 1173 269 80 27 chr12 141136834 141137268 -3145221 + MER115 DNA AcHobo 180 636 -57 342 326 53 0 chr12 141137268 141137455 -3145034 + LTR16C LTR ERVL 1 197 -294 201 175 0 0 chr12 141137762 141137802 -3144687 + CT-rich Low_complexity Low_complexity 1 40 0 373 281 151 0 chr12 141137830 141137976 -3144513 - L2 LINE L2 -26 3287 3120 307 323 123 0 chr12 141138260 141138455 -3144034 - L2 LINE L2 -470 2844 2626 974 206 27 124 chr12 141138551 141138676 -3143813 + MLT1A1 LTR MaLR 1 137 -228 2304 62 0 17 chr12 141138676 141138966 -3143523 + AluY SINE Alu 23 307 -4 974 206 27 124 chr12 141138966 141139243 -3143246 + MLT1A1 LTR MaLR 137 364 -1 1929 166 3 3 chr12 141139394 141139701 -3142788 + AluSx SINE Alu 2 308 -4 8486 29 6 0 chr12 141140923 141142183 -3140306 - L1P2 LINE L1 -502 5653 4390 3930 29 2 2 chr12 141142181 141142637 -3139852 + L1P2 LINE L1 3926 4381 -1765 * 2104 127 7 0 chr12 141142640 141142931 -3139558 - AluSx SINE Alu -19 293 1 372 305 17 0 chr12 141142931 141143049 -3139440 + MIR SINE MIR 119 238 -24 1077 124 0 67 chr12 141143232 141143410 -3139079 - FRAM SINE Alu 0 166 1 310 325 137 70 chr12 141143646 141144003 -3138486 + L2 LINE L2 2890 3270 -2 1046 240 119 44 chr12 141144072 141144460 -3138029 - MLT1K LTR MaLR -20 568 152 207 354 48 34 chr12 141144713 141144860 -3137629 - L2 LINE L2 -497 2817 2669 189 0 0 0 chr12 141145111 141145132 -3137357 + (TG)n Simple_repeat Simple_repeat 2 22 0 712 186 173 0 chr12 141146271 141146427 -3136062 + MER5A DNA MER1_type 6 188 -1 240 303 8 61 chr12 141147354 141147486 -3135003 - MIR SINE MIR -12 250 126 6525 154 24 15 chr12 141148084 141149194 -3133295 + Tigger1 DNA MER2_type 2 1121 -1297 2763 75 6 0 chr12 141149194 141149542 -3132947 + L1PA8 LINE L1 5823 6172 0 2831 138 57 73 chr12 141149594 141149805 -3132684 + Tigger1 DNA MER2_type 1867 2080 -338 2233 80 31 0 chr12 141149805 141150092 -3132397 - AluSq SINE Alu -17 296 1 2831 138 57 73 chr12 141150092 141150250 -3132239 + Tigger1 DNA MER2_type 2080 2239 -179 2136 140 0 3 chr12 141150250 141150564 -3131925 - AluSq SINE Alu 0 313 1 2831 138 57 73 chr12 141150564 141150752 -3131737 + Tigger1 DNA MER2_type 2239 2416 -2 234 245 20 0 chr12 141150769 141150818 -3131671 + L2 LINE L2 3244 3293 -20 374 233 48 104 chr12 141151222 141151473 -3131016 - MIR SINE MIR -13 249 16 231 305 160 15 chr12 141151875 141152006 -3130483 - L2 LINE L2 0 3313 3164 223 283 38 19 chr12 141152157 141152263 -3130226 - L2 LINE L2 -322 2950 2843 510 277 81 21 chr12 141152465 141152700 -3129789 - MER20B DNA MER1_type 0 783 535 1221 282 16 21 chr12 141152748 141153135 -3129354 - MER20B DNA MER1_type -364 419 35 286 240 174 73 chr12 141153947 141154041 -3128448 + MER102a DNA MER1_type 2 85 -1332 1973 72 15 98 chr12 141154041 141154376 -3128113 - AluSq SINE Alu -6 307 1 286 240 174 73 chr12 141154376 141154556 -3127933 + MER102a DNA MER1_type 85 304 -26 207 308 134 35 chr12 141154651 141154823 -3127666 + MIR SINE MIR 28 216 -46 414 254 25 0 chr12 141154962 141155084 -3127405 + MLT1J2 LTR MaLR 11 135 -315 2160 134 0 0 chr12 141155283 141155581 -3126908 + AluSx SINE Alu 1 298 -14 226 277 53 21 chr12 141155617 141155711 -3126778 + MLT1J1 LTR MaLR 346 442 -4 279 275 57 74 chr12 141156598 141156827 -3125662 + MLT1K LTR MaLR 353 577 -11 250 254 16 16 chr12 141156945 141157008 -3125481 - MIR SINE MIR -1 261 199 252 239 22 54 chr12 141157265 141157357 -3125132 - MIR SINE MIR -17 245 157 192 222 346 0 chr12 141157914 141157995 -3124494 - MIR SINE MIR -130 132 24 425 307 69 10 chr12 141158328 141158530 -3123959 + L2 LINE L2 2719 2932 -382 2173 118 7 0 chr12 141160654 141160960 -3121529 + AluSx SINE Alu 1 308 -4 263 221 15 15 chr12 141161064 141161132 -3121357 + LTR33A LTR ERVL 321 388 -135 1778 192 7 3 chr12 141161292 141161589 -3120900 - AluJb SINE Alu -14 298 1 2064 126 0 0 chr12 141161878 141162164 -3120325 - AluSx SINE Alu -13 299 14 349 299 13 38 chr12 141162648 141162805 -3119684 - L2 LINE L2 -1 3312 3160 1806 169 7 10 chr12 141165121 141165429 -3117060 - AluJb SINE Alu -5 307 1 2483 60 3 0 chr12 141165623 141165922 -3116567 - AluY SINE Alu -11 300 1 855 326 74 40 chr12 141166058 141166531 -3115958 - MLT1K LTR MaLR -24 564 76 640 291 13 0 chr12 141166535 141166686 -3115803 + L2 LINE L2 3160 3312 -1 190 368 32 0 chr12 141167050 141167145 -3115344 - L2 LINE L2 -247 3025 2928 183 129 0 0 chr12 141167477 141167508 -3114981 + (TCC)n Simple_repeat Simple_repeat 2 32 0 831 203 0 0 chr12 141167700 141167968 -3114521 + (CAT)n Simple_repeat Simple_repeat 1 268 0 7179 206 27 13 chr12 141168052 141169034 -3113455 - L1 LINE L1 -2514 3632 2620 2460 70 0 3 chr12 141169034 141169332 -3113157 - AluY SINE Alu -14 297 1 7179 206 27 13 chr12 141169332 141170041 -3112448 - L1 LINE L1 -3526 2620 1923 6676 93 3 5 chr12 141170041 141171656 -3110833 + L1PB1 LINE L1 4534 6150 -1 192 152 0 0 chr12 141172258 141172291 -3110198 + CT-rich Low_complexity Low_complexity 2 34 0 414 229 46 9 chr12 141172646 141172755 -3109734 - Charlie8 DNA MER1_type -2208 209 97 34 0 0 0 chr12 141173054 141173088 -3109401 + AT_rich Low_complexity Low_complexity 1 34 0 6937 137 24 6 chr12 141173125 141174537 -3107952 - L1MA2 LINE L1 0 6304 4875 1655 176 0 0 chr12 141174564 141174843 -3107646 - L1MA2 LINE L1 -1221 4925 4647 1328 195 128 15 chr12 141174847 141175541 -3106948 - L1ME1 LINE L1 -38 6128 5210 302 265 53 66 chr12 141175594 141175745 -3106744 - MIR SINE MIR -56 206 58 352 225 23 85 chr12 141175787 141175916 -3106573 + L2 LINE L2 3188 3308 -5 365 321 59 44 chr12 141176037 141176308 -3106181 + MLT1K LTR MaLR 194 468 -120 1713 251 92 15 chr12 141176321 141176799 -3105690 - MLT1F1 LTR MaLR -52 515 1 2320 160 43 5 chr12 141176820 141177214 -3105275 - MSTB2 LTR MaLR 0 457 49 2437 42 0 3 chr12 141177269 141177573 -3104916 - AluY SINE Alu 0 303 1 2379 51 0 7 chr12 141177585 141177927 -3104562 - AluY SINE Alu 0 311 1 375 135 3 0 chr12 141177927 141177982 -3104507 - MSTB2 LTR MaLR -369 62 2 251 330 9 70 chr12 141178368 141178483 -3104006 + L2 LINE L2 3156 3263 -9 203 156 44 0 chr12 141179133 141179178 -3103311 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 1852 209 82 30 chr12 141179278 141179793 -3102696 + MER39 LTR ERV1 4 707 0 229 386 92 5 chr12 141179824 141180008 -3102481 - MIR SINE MIR -50 212 13 2312 112 62 39 chr12 141180124 141180480 -3102009 - THE1B LTR MaLR 0 364 1 1522 214 162 12 chr12 141180510 141180930 -3101559 - MLT1D LTR MaLR 0 505 23 200 167 0 0 chr12 141180930 141180960 -3101529 + G-rich Low_complexity Low_complexity 1 30 0 197 275 36 96 chr12 141180989 141181156 -3101333 + MIR SINE MIR 95 251 -11 263 284 73 0 chr12 141182094 141182203 -3100286 + L2 LINE L2 3193 3309 -4 246 281 18 0 chr12 141182283 141182340 -3100149 + (TG)n Simple_repeat Simple_repeat 1 58 0 497 273 110 10 chr12 141182486 141182786 -3099703 - L1ME4a LINE L1 -193 5928 5599 1507 250 56 12 chr12 141182995 141183475 -3099014 + Charlie4a DNA MER1_type 2 502 -6 2307 94 0 0 chr12 141183478 141183776 -3098713 - AluSx SINE Alu -14 298 1 415 319 55 8 chr12 141184097 141184354 -3098135 - MER113 DNA MER1_type? -92 429 161 627 266 50 9 chr12 141185481 141185703 -3096786 - L1ME1 LINE L1 -232 5934 5704 358 306 72 31 chr12 141185689 141185911 -3096578 + L1ME1 LINE L1 5927 6157 -9 * 219 267 23 0 chr12 141186645 141186731 -3095758 + (TA)n Simple_repeat Simple_repeat 1 88 0 209 217 31 0 chr12 141186751 141186880 -3095609 + (TA)n Simple_repeat Simple_repeat 2 134 0 249 139 0 0 chr12 141186963 141187006 -3095483 + (CA)n Simple_repeat Simple_repeat 1 43 0 1962 36 0 0 chr12 141187889 141188111 -3094378 + L1PA4 LINE L1 5934 6155 0 529 266 58 55 chr12 141188323 141188635 -3093854 - L1ME3 LINE L1 -328 5834 5522 680 82 0 0 chr12 141188644 141188729 -3093760 + AluSc SINE Alu 204 288 -21 852 181 0 0 chr12 141188878 141189049 -3093440 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 2146 161 33 0 chr12 141189074 141189409 -3093080 - MER7A DNA MER2_type -2 344 1 257 231 15 15 chr12 141189414 141189479 -3093010 + (TA)n Simple_repeat Simple_repeat 1 65 0 248 120 20 0 chr12 141190150 141190200 -3092289 + T-rich Low_complexity Low_complexity 2 52 0 285 311 131 6 chr12 141191032 141191215 -3091274 + L2 LINE L2 3102 3307 -6 678 159 24 32 chr12 141191215 141191341 -3091148 + FLAM_C SINE Alu 1 125 -18 2053 124 0 20 chr12 141191366 141191664 -3090825 + AluSx SINE Alu 6 297 -15 21 0 0 0 chr12 141192067 141192088 -3090401 + AT_rich Low_complexity Low_complexity 1 21 0 255 169 400 0 chr12 141192374 141192439 -3090050 + MER44D DNA MER2_type 1 91 -614 2024 118 19 45 chr12 141192439 141192752 -3089737 + AluY SINE Alu 1 305 -6 1060 171 0 0 chr12 141192752 141192916 -3089573 + AluSg/x SINE Alu 134 297 -15 1206 204 30 15 chr12 141192916 141193186 -3089303 + MER44D DNA MER2_type 88 361 -344 238 180 82 0 chr12 141193165 141193226 -3089263 + MER44D DNA MER2_type 296 361 -344 * 2224 169 27 8 chr12 141193285 141193687 -3088802 + Tigger7 DNA MER2_type 2078 2487 0 486 242 55 0 chr12 141193695 141193823 -3088666 + MER91C DNA MER1_type 5 139 -1 189 0 0 0 chr12 141193934 141193955 -3088534 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 275 196 42 119 chr12 141194861 141194976 -3087513 + Charlie7 DNA MER1_type 2453 2553 -59 2146 110 7 13 chr12 141194976 141195276 -3087213 - AluSp SINE Alu -15 298 1 275 196 42 119 chr12 141195276 141195328 -3087161 + Charlie7 DNA MER1_type 2553 2607 -5 208 246 0 35 chr12 141196278 141196335 -3086154 + CT-rich Low_complexity Low_complexity 2 56 0 348 24 0 0 chr12 141196339 141196380 -3086109 + (CA)n Simple_repeat Simple_repeat 2 42 0 625 263 61 65 chr12 141196725 141197142 -3085347 + MLT1J1 LTR MaLR 8 394 -52 246 175 38 0 chr12 141197655 141197735 -3084754 + (TA)n Simple_repeat Simple_repeat 1 83 0 1995 197 97 25 chr12 141199088 141199612 -3082877 - MER68 LTR ERV1 0 562 1 1246 187 0 0 chr12 141200070 141200279 -3082210 - AluSg/x SINE Alu -5 307 99 292 172 58 0 chr12 141200346 141200425 -3082064 + AluS SINE Alu 35 73 -230 396 216 0 0 chr12 141202368 141202465 -3080024 + (TGGA)n Simple_repeat Simple_repeat 2 98 0 333 235 27 54 chr12 141203058 141203207 -3079282 + (CATATA)n Simple_repeat Simple_repeat 3 147 0 255 237 0 0 chr12 141203341 141203400 -3079089 + L2 LINE L2 3247 3305 -8 189 0 0 0 chr12 141203698 141203719 -3078770 + (T)n Simple_repeat Simple_repeat 1 21 0 237 285 139 23 chr12 141204512 141204684 -3077805 - MER113 DNA MER1_type? -1 520 329 183 80 0 0 chr12 141204814 141204839 -3077650 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1862 170 0 0 chr12 141204841 141205124 -3077365 - AluSx SINE Alu -29 283 1 814 251 87 83 chr12 141205147 141205568 -3076921 - MLT1J LTR MaLR -45 466 41 2279 109 0 7 chr12 141205568 141205872 -3076617 + AluSg SINE Alu 1 302 -8 814 251 87 83 chr12 141205872 141205908 -3076581 - MLT1J LTR MaLR -470 41 7 212 288 38 12 chr12 141206455 141206535 -3075954 + MIR SINE MIR 121 202 -60 261 0 0 0 chr12 141206895 141206924 -3075565 + (A)n Simple_repeat Simple_repeat 1 29 0 1748 112 4 4 chr12 141206926 141207168 -3075321 + AluY SINE Alu 1 242 -69 28 0 0 0 chr12 141207353 141207381 -3075108 + AT_rich Low_complexity Low_complexity 1 28 0 183 250 125 0 chr12 141207740 141207788 -3074701 + L3 LINE CR1 1448 1501 -76 1765 239 29 25 chr12 141207917 141208399 -3074090 + L1ME LINE L1 6 489 -5581 343 269 19 0 chr12 141208629 141208737 -3073752 + L2 LINE L2 2564 2673 -641 334 321 130 57 chr12 141208748 141208928 -3073561 + L2 LINE L2 2804 2970 -343 1998 133 3 40 chr12 141208928 141209250 -3073239 - AluSx SINE Alu 0 312 3 1852 168 19 10 chr12 141209252 141209561 -3072928 - AluJo SINE Alu 0 312 1 334 321 130 57 chr12 141209561 141209832 -3072657 + L2 LINE L2 2970 3291 -22 800 174 14 14 chr12 141209837 141209981 -3072508 - FRAM SINE Alu -9 167 24 537 313 15 10 chr12 141210419 141210614 -3071875 - MIR3 SINE MIR -9 199 4 818 252 0 11 chr12 141211346 141211631 -3070858 + (TGGA)n Simple_repeat Simple_repeat 1 281 0 1595 198 93 3 chr12 141211648 141211981 -3070508 - MER47A DNA MER2_type -1 365 3 571 332 44 33 chr12 141211994 141212355 -3070134 - L1MC4a LINE L1 -1933 5875 5511 308 225 55 22 chr12 141212389 141212520 -3069969 - L1MC4a LINE L1 -869 5422 5289 225 132 0 0 chr12 141212930 141212968 -3069521 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 254 257 291 14 chr12 141213411 141213559 -3068930 + MLT1K LTR MaLR 315 503 -85 181 151 38 0 chr12 141213619 141213672 -3068817 + T-rich Low_complexity Low_complexity 1 55 0 1333 140 22 9 chr12 141213681 141213910 -3068579 - L1MB1 LINE L1 -1 6167 5936 2004 93 0 4 chr12 141214795 141215053 -3067436 + AluSg SINE Alu 48 304 -6 923 199 70 37 chr12 141215181 141215453 -3067036 - MLT1C LTR MaLR 0 467 187 957 168 0 0 chr12 141215476 141215631 -3066858 - FRAM SINE Alu -21 155 1 415 183 256 10 chr12 141215640 141215782 -3066707 - MLT1C LTR MaLR -222 168 1 348 210 227 8 chr12 141216050 141216169 -3066320 - MIR SINE MIR -117 145 1 337 206 165 21 chr12 141216872 141216969 -3065520 - MLT1I LTR MaLR -240 169 59 1437 138 17 34 chr12 141217274 141217513 -3064976 + THE1B LTR MaLR 1 235 -129 529 332 82 30 chr12 141217505 141217537 -3064952 + MLT1I LTR MaLR 44 73 -336 * 2483 121 5 24 chr12 141217537 141217908 -3064581 + THE1B LTR MaLR 1 364 0 529 332 82 30 chr12 141217908 141218206 -3064283 + MLT1I LTR MaLR 73 391 -18 265 132 19 75 chr12 141219017 141219070 -3063419 + MLT1G LTR MaLR 1 50 -545 856 241 128 45 chr12 141219117 141219546 -3062943 + MLT1G LTR MaLR 117 590 0 260 314 41 33 chr12 141219726 141219847 -3062642 + Charlie8 DNA MER1_type 85 206 -2211 446 149 68 0 chr12 141220521 141220682 -3061807 + (TCTA)n Simple_repeat Simple_repeat 1 172 0 395 138 72 12 chr12 141220724 141220891 -3061598 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 357 154 59 18 chr12 141220943 141221112 -3061377 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 701 214 102 41 chr12 141221731 141221927 -3060562 + MER63A DNA MER1_type 1 208 -2 415 143 0 26 chr12 141224008 141224085 -3058404 + MADE1 DNA Mariner 6 80 0 780 212 47 21 chr12 141224911 141225104 -3057385 - MER3 DNA MER1_type -6 203 6 1840 186 53 16 chr12 141225109 141225544 -3056945 - Charlie2 DNA MER1_type -32 2830 2380 470 189 21 60 chr12 141225545 141225663 -3056826 + L1MA9 LINE L1 5947 6064 -119 1803 185 0 3 chr12 141225663 141225966 -3056523 + AluJb SINE Alu 1 302 -10 470 189 21 60 chr12 141225966 141225985 -3056504 + L1MA9 LINE L1 6064 6082 -101 433 243 36 9 chr12 141225998 141226109 -3056380 + L1MA9 LINE L1 6177 6290 -22 559 258 156 30 chr12 141226279 141226574 -3055915 - MLT1I LTR MaLR -6 403 72 282 250 53 13 chr12 141226803 141226879 -3055610 - MLT2E LTR ERVL -503 125 47 837 256 149 0 chr12 141227009 141227298 -3055191 - Charlie2 DNA MER1_type -675 2187 1856 534 279 130 27 chr12 141227363 141227625 -3054864 - Charlie2 DNA MER1_type -2573 289 1 2261 107 10 10 chr12 141228491 141228800 -3053689 - AluSx SINE Alu -3 309 1 269 272 117 19 chr12 141228887 141228990 -3053499 - MLT1I LTR MaLR -3 406 294 181 324 14 14 chr12 141229338 141229409 -3053080 - L2 LINE L2 -195 3077 3007 186 292 83 0 chr12 141230803 141230875 -3051614 + MIR SINE MIR 66 143 -119 246 302 39 50 chr12 141230935 141231114 -3051375 + L2 LINE L2 2880 3056 -216 293 240 48 39 chr12 141232376 141232480 -3050009 - MIR SINE MIR -66 142 38 310 324 21 41 chr12 141232734 141232879 -3049610 + MLT1K LTR MaLR 3 144 -444 790 279 13 18 chr12 141232900 141233125 -3049364 + Charlie1a DNA MER1_type 1 224 -1231 1879 220 8 35 chr12 141233125 141233625 -3048864 + LTR60 LTR ERV1 1 550 -36 1339 150 21 9 chr12 141233630 141233863 -3048626 - MER4D LTR ERV1 -667 236 1 4827 210 51 23 chr12 141234085 141234555 -3047934 + Charlie1a DNA MER1_type 214 669 -2092 4675 147 80 7 chr12 141234555 141235397 -3047092 + MER4D LTR ERV1 1 903 0 4827 210 51 23 chr12 141235397 141236132 -3046357 + Charlie1a DNA MER1_type 669 1453 -2 235 236 64 36 chr12 141236417 141236527 -3045962 + MLT1K LTR MaLR 456 568 -20 701 219 118 6 chr12 141237132 141237301 -3045188 - MER5A DNA MER1_type 0 189 2 389 269 37 12 chr12 141238368 141238587 -3043902 - MLT1L LTR MaLR -5 610 330 670 256 68 0 chr12 141238616 141238807 -3043682 - LTR16C LTR ERVL -31 460 257 2084 129 0 28 chr12 141239515 141239832 -3042657 + AluSg SINE Alu 1 308 -2 259 32 0 0 chr12 141240663 141240694 -3041795 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 2248 91 3 3 chr12 141240694 141240980 -3041509 - AluSp SINE Alu -1 316 1 182 317 0 0 chr12 141241692 141241752 -3040737 - MIR SINE MIR -148 114 55 1039 283 66 27 chr12 141241869 141242310 -3040179 + L1ME2 LINE L1 5685 6142 -22 1083 137 29 0 chr12 141243370 141243545 -3038944 + Tigger2 DNA MER2_type 2474 2653 -65 299 324 59 0 chr12 141243777 141243913 -3038576 - Charlie8 DNA MER1_type -2150 267 124 2704 35 0 6 chr12 141243992 141244305 -3038184 - AluYa5 SINE Alu 0 311 1 323 83 21 0 chr12 141244604 141244652 -3037837 - MLT2B1 LTR ERVL -8 512 464 357 271 0 0 chr12 141244656 141244800 -3037689 + (TA)n Simple_repeat Simple_repeat 1 144 0 1426 150 28 20 chr12 141244860 141245114 -3037375 - Tigger2 DNA MER2_type 0 2718 2463 2387 182 8 0 chr12 141245182 141245572 -3036917 - Tigger2 DNA MER2_type -1974 744 352 322 127 36 0 chr12 141245573 141245628 -3036861 + MLT2B1 LTR ERVL 464 520 0 216 130 0 0 chr12 141245634 141245680 -3036809 + (TA)n Simple_repeat Simple_repeat 1 46 0 1616 178 35 6 chr12 141245690 141246032 -3036457 - Tigger2 DNA MER2_type -2365 353 2 2328 209 21 64 chr12 141246061 141246636 -3035853 + MLT2B3 LTR ERVL 5 554 0 243 188 0 0 chr12 141246638 141246686 -3035803 + (TATG)n Simple_repeat Simple_repeat 1 48 0 2088 176 55 40 chr12 141246771 141247243 -3035246 - MLT2B1 LTR ERVL -41 479 1 204 256 151 12 chr12 141247243 141247329 -3035160 + L2 LINE L2 3216 3313 0 1844 231 67 67 chr12 141247541 141248095 -3034394 - MLT2B3 LTR ERVL 0 554 1 1147 117 19 6 chr12 141248772 141248988 -3033501 + AluSc SINE Alu 118 335 0 1469 189 110 6 chr12 141249209 141249537 -3032952 + MSTB1 LTR MaLR 1 362 -70 1787 176 58 35 chr12 141249542 141250074 -3032415 - MLT2A2 LTR ERVL -10 544 1 365 136 74 25 chr12 141250074 141250145 -3032344 + MSTB1 LTR MaLR 358 432 0 2321 105 0 19 chr12 141250840 141251154 -3031335 - AluSx SINE Alu -4 308 1 731 196 11 84 chr12 141251157 141251336 -3031153 - AluSc SINE Alu -9 300 135 216 222 19 19 chr12 141251406 141251460 -3031029 + MIR SINE MIR 199 252 -10 731 242 35 54 chr12 141251466 141251726 -3030763 + L1ME1 LINE L1 5895 6149 -17 191 299 184 0 chr12 141251772 141251859 -3030630 - L2 LINE L2 -43 3229 3127 256 164 18 18 chr12 141252705 141252760 -3029729 + MLT1H LTR MaLR 98 152 -397 322 284 90 19 chr12 141253130 141253341 -3029148 + MIR SINE MIR 21 246 -16 309 26 0 0 chr12 141254045 141254083 -3028406 + (TG)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr12 141254098 141254119 -3028370 + AT_rich Low_complexity Low_complexity 1 21 0 253 284 22 75 chr12 141254179 141254313 -3028176 + L1 LINE L1 4716 4842 -1304 368 249 73 30 chr12 141254317 141254482 -3028007 + MLT1J2 LTR MaLR 1 172 -278 1169 225 77 9 chr12 141254633 141254971 -3027518 - MLT1A1 LTR MaLR 0 365 5 266 262 0 0 chr12 141254979 141255040 -3027449 + MLT1I LTR MaLR 349 409 0 3296 87 13 4 chr12 141255324 141255784 -3026705 + L1PA13 LINE L1 5699 6162 -1 1260 317 71 4 chr12 141256054 141256521 -3025968 - MLT1D LTR MaLR 0 505 8 1406 99 9 77 chr12 141256796 141257029 -3025460 - AluY SINE Alu -2 309 93 26 30 0 0 chr12 141257046 141257079 -3025410 + AT_rich Low_complexity Low_complexity 1 33 0 2206 133 36 28 chr12 141257314 141257675 -3024814 + THE1B LTR MaLR 1 364 0 209 364 0 0 chr12 141258359 141258447 -3024042 - L3 LINE CR1 -434 1143 1056 238 289 56 0 chr12 141258858 141258948 -3023541 - MLT1J LTR MaLR -37 474 380 581 305 34 24 chr12 141260702 141260997 -3021492 + L1MC4a LINE L1 5631 5928 -1880 189 121 0 0 chr12 141261177 141261210 -3021279 + (GGA)n Simple_repeat Simple_repeat 2 34 0 246 373 25 0 chr12 141263180 141263341 -3019148 - MIR3 SINE MIR -6 202 38 438 303 179 21 chr12 141263666 141264052 -3018437 + MLT1H LTR MaLR 1 447 -102 351 355 68 35 chr12 141264198 141264564 -3017925 - L2 LINE L2 -340 2974 2597 214 279 0 16 chr12 141264584 141264645 -3017844 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 1224 133 12 79 chr12 141264676 141264917 -3017572 + MER2 DNA MER2_type 1 225 -120 550 179 116 0 chr12 141265358 141265453 -3017036 + MER2 DNA MER2_type 240 345 0 23 33 0 0 chr12 141265597 141265627 -3016862 + AT_rich Low_complexity Low_complexity 1 30 0 183 42 0 0 chr12 141266275 141266299 -3016190 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1264 314 80 9 chr12 141267002 141267537 -3014952 + MLT1K LTR MaLR 16 588 0 14770 141 25 8 chr12 141267864 141270240 -3012249 - Tigger1 DNA MER2_type 0 2418 4 2853 158 22 33 chr12 141270844 141270987 -3011502 - L1MC1 LINE L1 -1 6332 6189 2297 95 67 25 chr12 141270987 141271346 -3011143 - THE1C LTR MaLR 0 375 2 2853 158 22 33 chr12 141271346 141271753 -3010736 - L1MC1 LINE L1 -144 6189 5788 6523 60 4 1 chr12 141271753 141272572 -3009917 + L1PA8 LINE L1 5345 6165 -7 1317 117 5 2 chr12 141272577 141272786 -3009703 - L1MC1 LINE L1 -441 5801 5597 444 182 0 0 chr12 141273820 141273908 -3008581 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 237 65 0 0 chr12 141275283 141275314 -3007175 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1961 260 42 20 chr12 141275336 141275879 -3006610 - MER77 LTR ERV1 -6 599 45 635 207 20 76 chr12 141277049 141277173 -3005316 - MER5A DNA MER1_type -1 188 78 2210 112 0 13 chr12 141277173 141277477 -3005012 - AluSx SINE Alu -12 300 1 635 207 20 76 chr12 141277477 141277550 -3004939 - MER5A DNA MER1_type -111 78 2 2117 121 0 23 chr12 141278220 141278526 -3003963 + AluSq SINE Alu 1 299 -14 390 300 56 25 chr12 141279372 141279532 -3002957 - MIR SINE MIR -22 240 76 341 223 176 88 chr12 141279752 141279900 -3002589 - MLT1J2 LTR MaLR -45 401 241 22 0 0 0 chr12 141280673 141280695 -3001794 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 141280851 141280877 -3001612 + AT_rich Low_complexity Low_complexity 1 26 0 648 120 0 0 chr12 141281030 141281130 -3001359 + AluSc SINE Alu 205 304 -5 294 276 31 31 chr12 141281733 141281831 -3000658 - MLT1J2 LTR MaLR -284 166 69 185 125 25 25 chr12 141282403 141282443 -3000046 - MIR SINE MIR -207 55 16 308 225 49 63 chr12 141282446 141282588 -2999901 - MLT1L LTR MaLR -2 613 474 410 289 97 40 chr12 141282868 141283096 -2999393 - MER102b DNA MER1_type -5 336 96 31 26 0 0 chr12 141283658 141283696 -2998793 + AT_rich Low_complexity Low_complexity 1 38 0 1508 159 30 75 chr12 141283708 141284076 -2998413 + AluJo SINE Alu 1 355 0 2992 74 0 11 chr12 141284678 141285057 -2997432 + THE1C LTR MaLR 1 375 0 485 200 50 0 chr12 141285648 141285748 -2996741 - MLT1A1 LTR MaLR 0 365 261 900 217 43 23 chr12 141285877 141286126 -2996363 - MLT1A1 LTR MaLR -100 265 1 218 295 8 93 chr12 141286137 141286266 -2996223 + MIR SINE MIR 29 146 -116 287 250 68 0 chr12 141286694 141286782 -2995707 - MER58B DNA MER1_type 0 341 248 3661 121 61 5 chr12 141286928 141287506 -2994983 - MER4B LTR ERV1 0 610 1 240 314 76 73 chr12 141288394 141288549 -2993940 + L2 LINE L2 2566 2719 -595 1771 167 0 0 chr12 141288549 141288830 -2993659 + AluSx SINE Alu 9 289 -23 2765 107 3 3 chr12 141288830 141289222 -2993267 + L1PA10 LINE L1 5777 6168 0 240 314 76 73 chr12 141289222 141289473 -2993016 + L2 LINE L2 2718 2974 -340 326 224 52 35 chr12 141289660 141289776 -2992713 + L2 LINE L2 3182 3299 -14 513 203 83 15 chr12 141289949 141290082 -2992407 - MIR SINE MIR -97 165 24 185 94 31 0 chr12 141290124 141290156 -2992333 + CT-rich Low_complexity Low_complexity 4 36 0 397 310 77 80 chr12 141290928 141291280 -2991209 + MLT1K LTR MaLR 76 426 -162 2468 97 49 9 chr12 141291514 141291863 -2990626 - L1PB3 LINE L1 -3 6151 5789 264 150 0 50 chr12 141291853 141291913 -2990576 + LTR66 LTR ERVL 383 439 -171 380 119 30 0 chr12 141291915 141291982 -2990507 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 1217 112 0 0 chr12 141291982 141292152 -2990337 - L1PB3 LINE L1 -363 5791 5622 601 312 63 8 chr12 141292538 141292962 -2989527 - LTR33 LTR ERVL -8 513 50 238 261 29 0 chr12 141292960 141293029 -2989460 - LTR33 LTR ERVL -401 120 50 * 322 211 133 0 chr12 141293027 141293117 -2989372 - LTR33 LTR ERVL -401 120 19 250 282 42 48 chr12 141293156 141293454 -2989035 - L1ME LINE L1 -621 5545 5255 501 252 40 7 chr12 141294307 141294458 -2988031 + MER103 DNA DNA 1 156 -10 2073 99 14 3 chr12 141294669 141294961 -2987528 - AluSx SINE Alu -17 295 1 1719 163 68 36 chr12 141295388 141295725 -2986764 + MER7A DNA MER2_type 1 346 0 31 44 0 0 chr12 141295866 141295911 -2986578 + AT_rich Low_complexity Low_complexity 1 45 0 1665 188 3 3 chr12 141295911 141296198 -2986291 + AluJb SINE Alu 1 287 -25 450 313 8 0 chr12 141296716 141296844 -2985645 - L2 LINE L2 -5 3267 3139 404 225 12 12 chr12 141297082 141297255 -2985234 + CT-rich Low_complexity Low_complexity 1 173 0 233 301 36 12 chr12 141297563 141297646 -2984843 + L2 LINE L2 3225 3309 -4 * 239 350 58 10 chr12 141297645 141297748 -2984741 + L2 LINE L2 3004 3111 -161 1928 115 7 4 chr12 141298906 141299184 -2983305 - L1PA13 LINE L1 -3 6160 5882 331 102 0 0 chr12 141299184 141299233 -2983256 + L1P4 LINE L1 5726 5774 -387 433 292 5 89 chr12 141299235 141299437 -2983052 - MIR SINE MIR -69 193 9 1830 156 10 13 chr12 141302395 141302697 -2979792 + AluJo SINE Alu 1 301 -11 5057 164 33 27 chr12 141303916 141304813 -2977676 - MER4D LTR ERV1 0 903 1 306 0 0 0 chr12 141304906 141304940 -2977549 + (TG)n Simple_repeat Simple_repeat 1 34 0 258 81 0 0 chr12 141304940 141304977 -2977512 + (GA)n Simple_repeat Simple_repeat 2 38 0 1329 206 37 20 chr12 141305543 141305839 -2976650 + MSTA LTR MaLR 3 303 -125 2386 121 11 24 chr12 141305843 141306222 -2976267 - MSTA LTR MaLR -39 389 16 315 171 49 37 chr12 141306682 141306764 -2975725 - L1MCa LINE L1 -4346 2080 1998 348 115 23 11 chr12 141306767 141306854 -2975635 + (TA)n Simple_repeat Simple_repeat 2 89 0 2297 105 0 0 chr12 141307320 141307624 -2974865 + AluSx SINE Alu 1 304 -8 356 301 25 37 chr12 141307815 141307978 -2974511 + L2 LINE L2 2651 2811 -503 240 35 0 0 chr12 141308267 141308296 -2974193 + (CA)n Simple_repeat Simple_repeat 1 29 0 482 217 86 33 chr12 141308388 141308540 -2973949 - MER58B DNA MER1_type 0 341 182 3881 107 13 8 chr12 141308904 141309430 -2973059 + MER1A DNA MER1_type 1 529 0 422 278 69 21 chr12 141309528 141309672 -2972817 + L2 LINE L2 3159 3309 -4 295 307 29 54 chr12 141311032 141311137 -2971352 + MER113 DNA MER1_type? 293 392 -129 2267 113 0 3 chr12 141311137 141311439 -2971050 - AluSg SINE Alu -9 301 1 295 307 29 54 chr12 141311439 141311538 -2970951 + MER113 DNA MER1_type? 392 492 -29 970 244 14 5 chr12 141311538 141311759 -2970730 + MER58A DNA MER1_type 1 223 -1 574 124 21 10 chr12 141311782 141311879 -2970610 + MER4A LTR ERV1 1 98 -566 1695 116 160 100 chr12 141311879 141312064 -2970425 + MER4A LTR ERV1 261 433 -231 1989 101 0 36 chr12 141312064 141312340 -2970149 - AluSc SINE Alu -14 295 30 1695 116 160 100 chr12 141312340 141312535 -2969954 + MER4A LTR ERV1 433 664 0 2268 195 90 35 chr12 141312886 141312913 -2969576 + LTR49 LTR ERV1 1 25 -570 2328 83 0 25 chr12 141312913 141313227 -2969262 + AluY SINE Alu 1 306 -5 2268 195 90 35 chr12 141313227 141313763 -2968726 + LTR49 LTR ERV1 25 595 0 2495 172 14 28 chr12 141313873 141314367 -2968122 + MER41B LTR ERV1 114 600 -35 226 268 98 27 chr12 141314468 141314580 -2967909 - MIR SINE MIR -70 192 73 305 194 0 28 chr12 141314714 141314786 -2967703 - L1MC5 LINE L1 -44 7917 7848 277 316 11 0 chr12 141314915 141315010 -2967479 + (TA)n Simple_repeat Simple_repeat 1 96 0 2157 121 3 3 chr12 141315017 141315315 -2967174 - AluSq SINE Alu -15 298 1 225 94 0 0 chr12 141315324 141315356 -2967133 + (TA)n Simple_repeat Simple_repeat 1 32 0 600 309 121 29 chr12 141315468 141316024 -2966465 - L1MB5 LINE L1 -310 5864 5258 2954 224 14 62 chr12 141316040 141316766 -2965723 + LTR8 LTR ERV1 1 691 0 25 0 0 0 chr12 141317067 141317092 -2965397 + AT_rich Low_complexity Low_complexity 1 25 0 423 288 50 14 chr12 141317252 141317391 -2965098 - MIR SINE MIR -71 191 48 236 266 49 0 chr12 141317843 141317986 -2964503 + (TA)n Simple_repeat Simple_repeat 1 150 0 858 184 0 0 chr12 141317986 141318165 -2964324 + (TG)n Simple_repeat Simple_repeat 2 180 0 1043 296 61 48 chr12 141318398 141319020 -2963469 - L1ME3A LINE L1 -222 5948 5319 201 94 0 0 chr12 141319345 141319377 -2963112 + (TG)n Simple_repeat Simple_repeat 1 32 0 222 217 17 130 chr12 141320514 141320548 -2961941 - L2 LINE L2 0 3272 3236 1919 223 61 40 chr12 141320548 141321042 -2961447 + MLT1D LTR MaLR 2 505 0 222 217 17 130 chr12 141321042 141321122 -2961367 - L2 LINE L2 -36 3236 3171 2444 209 8 4 chr12 141321897 141322389 -2960100 - L1MC3 LINE L1 -1 7784 7291 369 154 2 0 chr12 141322388 141322456 -2960033 - L1MC3 LINE L1 -855 6930 6870 * 252 59 0 0 chr12 141322459 141322493 -2959996 + (TC)n Simple_repeat Simple_repeat 1 34 0 327 25 0 0 chr12 141322493 141322533 -2959956 + (TG)n Simple_repeat Simple_repeat 2 41 0 454 242 76 81 chr12 141322544 141322767 -2959722 - MER106B DNA MER1_type -13 1046 2 2177 119 0 0 chr12 141323157 141323460 -2959029 - AluY SINE Alu -8 303 1 2195 133 0 0 chr12 141323460 141323760 -2958729 - AluSx SINE Alu -12 300 1 417 191 16 24 chr12 141324411 141324537 -2957952 + GA-rich Low_complexity Low_complexity 3 127 0 304 318 12 0 chr12 141324825 141324910 -2957579 - Charlie8 DNA MER1_type -2171 246 161 376 309 131 21 chr12 141324913 141325149 -2957340 - MIR SINE MIR 0 262 1 311 325 29 48 chr12 141326105 141326414 -2956075 - L2 LINE L2 -4 3309 2944 643 268 57 43 chr12 141326715 141326924 -2955565 + MLT1H1 LTR MaLR 3 214 -341 275 157 20 0 chr12 141326984 141327035 -2955454 + MLT1H1 LTR MaLR 235 286 -304 1042 189 5 57 chr12 141327138 141327350 -2955139 - AluJb SINE Alu -36 276 76 549 236 50 30 chr12 141327369 141327538 -2954951 + MLT1H1 LTR MaLR 403 553 -2 2385 93 0 0 chr12 141330720 141331021 -2951468 + AluSc SINE Alu 1 301 -8 389 325 44 44 chr12 141331053 141331324 -2951165 - MLT1J LTR MaLR -10 501 231 2144 117 10 3 chr12 141331346 141331645 -2950844 - AluSp SINE Alu -12 301 1 2471 76 0 3 chr12 141332629 141332932 -2949557 - AluY SINE Alu -9 302 1 294 277 150 3 chr12 141333074 141333245 -2949244 - MIR SINE MIR 0 262 12 220 125 75 0 chr12 141333971 141334011 -2948478 + L2 LINE L2 3261 3303 -10 25723 82 13 51 chr12 141334218 141337632 -2944857 + HUERS-P1 LTR ERV1 2650 6192 -71 2122 125 0 0 chr12 141337632 141337920 -2944569 + AluSx SINE Alu 1 288 -24 288 77 0 0 chr12 141337923 141337962 -2944527 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 25723 82 13 51 chr12 141337962 141338299 -2944190 + HUERS-P1 LTR ERV1 6194 6263 0 5486 89 13 0 chr12 141338299 141338981 -2943508 + LTR8 LTR ERV1 1 691 0 21 36 0 0 chr12 141339330 141339358 -2943131 + AT_rich Low_complexity Low_complexity 1 28 0 477 275 124 26 chr12 141340340 141340573 -2941916 + MLT1J2 LTR MaLR 1 256 -194 232 224 21 119 chr12 141340573 141340716 -2941773 + MLT1J1 LTR MaLR 311 439 -7 2162 103 14 0 chr12 141340976 141341258 -2941231 - AluSx SINE Alu -26 286 1 877 243 27 23 chr12 141341258 141341517 -2940972 - L1ME1 LINE L1 -56 6110 5851 2098 129 0 7 chr12 141342740 141343049 -2939440 - AluSg SINE Alu -3 307 1 2918 65 5 11 chr12 141343398 141343765 -2938724 + L1PA8 LINE L1 5805 6169 -3 869 216 66 38 chr12 141343841 141344054 -2938435 + MER20 DNA MER1_type 1 219 0 303 308 87 0 chr12 141344222 141344326 -2938163 - L2 LINE L2 -2 3270 3158 581 96 34 45 chr12 141344466 141344600 -2937889 + (TCTA)n Simple_repeat Simple_repeat 4 137 -41 2190 184 101 0 chr12 141344600 141344987 -2937502 - MSTB LTR MaLR 0 426 1 581 96 34 45 chr12 141344987 141345029 -2937460 + (TCTA)n Simple_repeat Simple_repeat 137 178 0 273 250 0 0 chr12 141345049 141345141 -2937348 + (TCCA)n Simple_repeat Simple_repeat 2 93 0 367 160 0 160 chr12 141345278 141345321 -2937168 - HAL1b LINE L1 -877 471 453 2413 138 8 22 chr12 141345321 141345690 -2936799 + THE1B LTR MaLR 1 364 0 367 160 0 160 chr12 141345690 141345752 -2936737 - HAL1b LINE L1 -895 453 383 24 0 0 0 chr12 141346156 141346180 -2936309 + AT_rich Low_complexity Low_complexity 1 24 0 1169 272 102 37 chr12 141346182 141346957 -2935532 - L1ME1 LINE L1 -311 5859 5039 28 29 0 0 chr12 141347207 141347242 -2935247 + AT_rich Low_complexity Low_complexity 1 35 0 365 282 31 41 chr12 141347286 141347481 -2935008 - L1ME1 LINE L1 -1479 4667 4475 21 36 0 0 chr12 141347496 141347524 -2934965 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr12 141347968 141347998 -2934491 + AT_rich Low_complexity Low_complexity 1 30 0 678 281 68 72 chr12 141348851 141349350 -2933139 - LTR33A LTR ERVL -15 508 12 1696 277 31 29 chr12 141349444 141349990 -2932499 - MLT1H1 LTR MaLR -8 547 1 196 311 57 19 chr12 141350550 141350656 -2931833 - MIR SINE MIR -80 128 19 2179 79 0 0 chr12 141350825 141351092 -2931397 + AluY SINE Alu 39 305 -6 712 230 26 31 chr12 141351480 141351671 -2930818 + MIR SINE MIR 73 262 0 24 0 0 0 chr12 141352319 141352343 -2930146 + AT_rich Low_complexity Low_complexity 1 24 0 2794 115 3 8 chr12 141352364 141352738 -2929751 + THE1C LTR MaLR 2 373 -2 9719 123 14 65 chr12 141352741 141354404 -2928085 + THE1C-int LTR MaLR 2 1580 0 2854 87 8 21 chr12 141354404 141354784 -2927705 + THE1C LTR MaLR 1 375 0 430 209 0 12 chr12 141356534 141356620 -2925869 + MER5B DNA MER1_type 1 85 -93 293 319 44 15 chr12 141356862 141356997 -2925492 - L2 LINE L2 0 3313 3175 899 215 48 14 chr12 141357133 141357342 -2925147 + MER20 DNA MER1_type 1 216 -3 520 286 31 6 chr12 141358007 141358168 -2924321 + L1MCa LINE L1 21 185 -6241 * 3384 248 61 13 chr12 141358156 141359733 -2922756 + L1MCa LINE L1 1883 3615 -2811 959 166 61 31 chr12 141359744 141359973 -2922516 + L1MA7 LINE L1 6056 6291 0 1476 254 66 30 chr12 141360032 141360559 -2921930 + L1MCa LINE L1 3639 4184 -2242 678 169 8 0 chr12 141360576 141360694 -2921795 - L1P LINE L1 -818 5328 5210 3917 80 24 21 chr12 141360694 141361219 -2921270 + L1PA10 LINE L1 5630 6166 -2 601 246 33 52 chr12 141361222 141361433 -2921056 + L1MCa LINE L1 4201 4407 -2019 * 3914 206 24 15 chr12 141361427 141361783 -2920706 + L1MC3 LINE L1 6893 7244 -541 3835 130 20 22 chr12 141361783 141362385 -2920104 + LTR43 LTR ERV1 1 601 -1 3914 206 24 15 chr12 141362385 141362629 -2919860 + L1MC3 LINE L1 7244 7484 -301 3208 91 14 25 chr12 141362629 141362934 -2919555 + MER57B LTR ERV1 1 302 -132 2124 103 0 0 chr12 141362934 141363244 -2919245 + AluY SINE Alu 1 310 0 3208 91 14 25 chr12 141363244 141363376 -2919113 + MER57B LTR ERV1 302 434 0 3914 206 24 15 chr12 141363376 141363645 -2918844 + L1MC3 LINE L1 7484 7771 -14 210 231 0 0 chr12 141365190 141365229 -2917260 + (CA)n Simple_repeat Simple_repeat 2 40 0 207 0 0 0 chr12 141366110 141366133 -2916356 + (CA)n Simple_repeat Simple_repeat 2 24 0 790 68 10 73 chr12 141366740 141366932 -2915557 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 218 156 22 0 chr12 141366961 141367006 -2915483 + GA-rich Low_complexity Low_complexity 1 46 0 * 234 128 0 0 chr12 141367001 141367040 -2915449 + (GAAAA)n Simple_repeat Simple_repeat 3 41 0 648 322 80 16 chr12 141368952 141369390 -2913099 + MER113 DNA MER1_type? 4 469 -52 255 289 0 0 chr12 141370439 141370515 -2911974 + MER116 DNA Mariner 1 76 -4 351 233 0 44 chr12 141370934 141371024 -2911465 + L2 LINE L2 3228 3313 0 399 239 138 6 chr12 141372252 141372419 -2910070 - MER53 DNA DNA 0 189 1 331 317 82 82 chr12 141373564 141373952 -2908537 + HAL1b LINE L1 337 724 -624 230 262 103 19 chr12 141374302 141374409 -2908080 + L1M4c LINE L1 2327 2442 -3942 563 296 127 56 chr12 141374414 141375336 -2907153 + L1M4c LINE L1 2438 3424 -2958 366 82 82 16 chr12 141375357 141375479 -2907010 + (TA)n Simple_repeat Simple_repeat 2 131 0 271 270 45 67 chr12 141375933 141376100 -2906389 - L2 LINE L2 -38 3275 3111 2161 137 0 0 chr12 141376100 141376407 -2906082 + AluSx SINE Alu 1 307 -5 568 218 94 12 chr12 141376588 141376758 -2905731 - MER20 DNA MER1_type -1 218 35 180 0 0 0 chr12 141376776 141376796 -2905693 + (A)n Simple_repeat Simple_repeat 1 20 0 243 0 0 0 chr12 141376796 141376823 -2905666 + (CA)n Simple_repeat Simple_repeat 2 28 0 285 206 68 0 chr12 141376898 141376971 -2905518 - MER53 DNA DNA -111 78 1 356 317 55 11 chr12 141377357 141377540 -2904949 + L1ME4a LINE L1 5562 5752 -369 478 227 117 0 chr12 141377980 141378134 -2904355 - HsTC2 DNA Tc2 -4 1894 1723 307 224 90 52 chr12 141378288 141378422 -2904067 + L1ME4a LINE L1 5944 6082 -39 2198 91 0 3 chr12 141378450 141378762 -2903727 - AluSx SINE Alu 0 311 1 220 191 0 0 chr12 141379015 141379057 -2903432 + CT-rich Low_complexity Low_complexity 4 45 0 228 336 7 48 chr12 141380553 141380699 -2901790 - Charlie8 DNA MER1_type -2182 235 96 240 111 0 0 chr12 141380719 141380755 -2901734 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1554 165 11 28 chr12 141380755 141381040 -2901449 - AluJb SINE Alu -32 280 1 27 0 0 0 chr12 141381050 141381077 -2901412 + AT_rich Low_complexity Low_complexity 1 27 0 43099 34 26 2 chr12 141381077 141387081 -2895408 - L1PA3 LINE L1 0 6155 1 319 235 86 0 chr12 141388322 141388403 -2894086 - L1MC4 LINE L1 -1339 6703 6616 231 236 0 14 chr12 141388403 141388475 -2894014 + L1MC4 LINE L1 6614 6684 -1358 2125 90 6 53 chr12 141388475 141388797 -2893692 - AluSq SINE Alu -6 307 1 429 293 21 14 chr12 141388797 141388937 -2893552 - Charlie8 DNA MER1_type -2276 141 1 2468 143 30 5 chr12 141389502 141389902 -2892587 - MSTA LTR MaLR 0 428 19 2905 69 0 11 chr12 141390890 141391254 -2891235 - L1PA7 LINE L1 -3 6151 5792 485 168 23 28 chr12 141391254 141391362 -2891127 + L1PA13 LINE L1 6064 6168 0 892 130 0 14 chr12 141391571 141391592 -2890897 - AluJo SINE Alu -176 136 116 180 0 0 0 chr12 141391592 141391612 -2890877 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 892 130 0 14 chr12 141391612 141391728 -2890761 - AluJo SINE Alu -196 116 1 22 0 0 0 chr12 141392330 141392352 -2890137 + AT_rich Low_complexity Low_complexity 1 22 0 562 229 94 12 chr12 141392773 141392943 -2889546 - MER20 DNA MER1_type -1 218 35 189 0 0 0 chr12 141392962 141392983 -2889506 + (A)n Simple_repeat Simple_repeat 1 21 0 285 206 68 0 chr12 141393072 141393145 -2889344 - MER53 DNA DNA -111 78 1 343 317 55 11 chr12 141393531 141393714 -2888775 + L1ME4a LINE L1 5562 5752 -369 459 227 117 0 chr12 141394154 141394308 -2888181 - HsTC2 DNA Tc2 -1 1897 1726 279 232 38 92 chr12 141394462 141394624 -2887865 + L1ME4a LINE L1 5944 6097 -24 2146 100 4 4 chr12 141394624 141394928 -2887561 - AluSx SINE Alu 0 307 4 279 232 38 92 chr12 141394928 141394949 -2887540 + L1ME4a LINE L1 6097 6118 -3 463 286 104 50 chr12 141395307 141395691 -2886798 + L2 LINE L2 2154 2558 -756 2288 96 0 3 chr12 141395778 141396080 -2886409 + AluSq SINE Alu 1 301 -12 221 96 77 0 chr12 141396111 141396163 -2886326 + (TA)n Simple_repeat Simple_repeat 1 56 0 2149 106 0 3 chr12 141396437 141396754 -2885735 - AluSg SINE Alu 0 319 4 293 171 244 12 chr12 141396762 141396844 -2885645 + MLT1J LTR MaLR 42 142 -369 601 268 57 16 chr12 141396848 141397042 -2885447 + MER3 DNA MER1_type 1 202 -7 573 316 72 21 chr12 141397045 141397380 -2885109 + MLT1J LTR MaLR 154 505 -6 542 220 71 36 chr12 141397432 141397600 -2884889 + MER5A DNA MER1_type 15 188 -1 22 0 0 0 chr12 141397739 141397761 -2884728 + AT_rich Low_complexity Low_complexity 1 22 0 614 200 118 24 chr12 141398074 141398244 -2884245 - MER5A DNA MER1_type 0 189 4 448 286 47 21 chr12 141398384 141398618 -2883871 + L2 LINE L2 2857 3096 -217 596 193 7 44 chr12 141398802 141399076 -2883413 + L1MA9 LINE L1 5996 6311 -1 210 163 0 23 chr12 141399557 141399600 -2882889 + GA-rich Low_complexity Low_complexity 3 44 0 949 218 159 19 chr12 141399756 141400127 -2882362 + LTR37A LTR ERV1 4 426 0 1015 179 5 35 chr12 141400897 141401098 -2881391 + MLT1D LTR MaLR 1 195 -310 507 171 0 0 chr12 141401107 141401195 -2881294 + MLT1E2 LTR MaLR 536 623 -3 350 323 73 24 chr12 141401339 141401503 -2880986 - MER91A DNA MER1_type -24 172 1 86 35 0 0 chr12 141401777 141401891 -2880598 + AT_rich Low_complexity Low_complexity 1 114 0 75 22 0 0 chr12 141401989 141402078 -2880411 + AT_rich Low_complexity Low_complexity 1 89 0 426 299 79 28 chr12 141402164 141402341 -2880148 + MER91A DNA MER1_type 1 186 -10 502 265 29 112 chr12 141402399 141402712 -2879777 - MLT1K LTR MaLR -241 347 61 639 218 14 7 chr12 141403058 141403205 -2879284 + MIR SINE MIR 61 208 -54 1697 142 9 77 chr12 141403285 141403610 -2878879 + AluJb SINE Alu 1 303 -9 2278 128 0 6 chr12 141407057 141407370 -2875119 - AluSx SINE Alu -1 311 1 576 284 81 5 chr12 141407403 141407625 -2874864 - MER113 DNA MER1_type? -36 485 247 715 298 86 26 chr12 141407676 141408096 -2874393 + LTR33 LTR ERVL 15 459 -62 942 200 40 49 chr12 141408204 141408429 -2874060 + MLT1D LTR MaLR 1 223 -282 269 226 0 0 chr12 141408464 141408517 -2873972 + MLT1J1 LTR MaLR 266 318 -128 1012 232 14 66 chr12 141408614 141408839 -2873650 + MLT1D LTR MaLR 232 440 -65 2301 115 0 0 chr12 141408839 141409151 -2873338 - AluSq SINE Alu -1 312 1 1012 232 14 66 chr12 141409151 141409214 -2873275 + MLT1D LTR MaLR 440 505 0 420 329 84 20 chr12 141409215 141409464 -2873025 + MLT1J1 LTR MaLR 49 313 -133 299 180 117 45 chr12 141409490 141409601 -2872888 - MER113 DNA MER1_type? -335 186 68 482 279 38 38 chr12 141409681 141409839 -2872650 + MER63A DNA MER1_type 44 201 -9 562 285 85 57 chr12 141409850 141410085 -2872404 - L2 LINE L2 -51 3262 3035 2387 198 43 43 chr12 141410085 141410645 -2871844 + MER68 LTR ERV1 3 562 0 562 285 85 57 chr12 141410645 141411100 -2871389 - L2 LINE L2 -278 3035 2556 322 277 102 48 chr12 141411241 141411407 -2871082 - MER5B DNA MER1_type 0 178 4 1702 210 64 16 chr12 141411487 141411863 -2870626 - MSTD LTR MaLR 0 396 3 613 298 72 35 chr12 141413223 141413542 -2868947 + MER102b DNA MER1_type 1 331 -10 956 213 86 5 chr12 141413634 141413831 -2868658 - MER20 DNA MER1_type 0 219 7 1239 252 113 16 chr12 141414076 141414500 -2867989 + LTR37B LTR ERV1 4 468 0 1127 227 46 11 chr12 141415130 141415390 -2867099 + L1MB1 LINE L1 5898 6166 -2 2133 179 17 17 chr12 141415390 141415810 -2866679 + L1MB3 LINE L1 5761 6180 -3 594 274 10 10 chr12 141416506 141416707 -2865782 + L2 LINE L2 2201 2401 -913 599 239 69 37 chr12 141417187 141417405 -2865084 + LTR7 LTR ERV1 226 450 0 2254 148 57 30 chr12 141417822 141418334 -2864155 + MLT2A2 LTR ERVL 6 554 0 442 299 219 21 chr12 141418469 141418853 -2863636 - L2 LINE L2 0 3313 2854 2329 78 3 3 chr12 141418927 141419221 -2863268 - AluY SINE Alu -17 294 1 316 284 83 10 chr12 141419284 141419455 -2863034 + MLT1G1 LTR MaLR 37 229 -301 1594 219 75 92 chr12 141419465 141419629 -2862860 + MER21B LTR ERV1 2 167 -696 1850 187 74 22 chr12 141419629 141420036 -2862453 + MSTA LTR MaLR 1 428 0 1594 219 75 92 chr12 141420036 141420620 -2861869 + MER21B LTR ERV1 167 737 -126 547 278 94 7 chr12 141420641 141420890 -2861599 + MLT1G1 LTR MaLR 241 595 0 620 305 16 12 chr12 141420890 141421136 -2861353 - L2 LINE L2 -587 2727 2481 195 310 52 43 chr12 141421567 141421683 -2860806 + L2 LINE L2 2943 3059 -213 369 329 55 34 chr12 141422058 141422295 -2860194 + L1M4 LINE L1 3205 3446 -2700 213 39 0 0 chr12 141422902 141422928 -2859561 + (CA)n Simple_repeat Simple_repeat 2 27 0 1514 246 63 27 chr12 141423912 141424461 -2858028 + MLT1E2 LTR MaLR 88 626 0 321 319 103 48 chr12 141425942 141426359 -2856130 - L2 LINE L2 -2 3311 2872 458 257 139 21 chr12 141426582 141426769 -2855720 + MIR SINE MIR 53 261 -1 510 316 40 9 chr12 141427559 141427784 -2854705 + MIR SINE MIR 31 262 0 216 97 0 0 chr12 141429541 141429572 -2852917 + (A)n Simple_repeat Simple_repeat 1 31 0 369 276 33 53 chr12 141430051 141430203 -2852286 - Charlie8 DNA MER1_type -2268 149 1 24 53 0 0 chr12 141430551 141430589 -2851900 + AT_rich Low_complexity Low_complexity 1 38 0 1828 109 91 25 chr12 141430603 141430888 -2851601 + AluJb SINE Alu 1 304 -8 314 269 0 0 chr12 141431922 141431989 -2850500 - MLT1J LTR MaLR -368 143 77 1664 176 28 7 chr12 141431992 141432281 -2850208 - AluJb SINE Alu -17 295 1 301 275 87 7 chr12 141432602 141432740 -2849749 - MIR SINE MIR -52 210 62 566 277 55 36 chr12 141433056 141433330 -2849159 + MER102a DNA MER1_type 52 330 0 438 235 99 72 chr12 141434986 141435207 -2847282 + L1ME3A LINE L1 5834 6060 -110 290 230 40 27 chr12 141435257 141435331 -2847158 - LTR33 LTR ERVL -433 88 14 2092 123 3 7 chr12 141436203 141436505 -2845984 - AluSg SINE Alu -9 301 1 1001 162 48 0 chr12 141436512 141436679 -2845810 - MER20 DNA MER1_type -3 216 42 402 325 35 10 chr12 141436748 141436951 -2845538 + Charlie8 DNA MER1_type 69 276 -2141 220 290 16 8 chr12 141437698 141437822 -2844667 + GA-rich Low_complexity Low_complexity 4 128 0 462 245 0 10 chr12 141439069 141439171 -2843318 + LTR33 LTR ERVL 66 166 -355 287 252 148 0 chr12 141440608 141440723 -2841766 + MIR SINE MIR 100 231 -31 2201 167 92 0 chr12 141441515 141441905 -2840584 - MSTB LTR MaLR 0 426 1 2621 106 8 11 chr12 141442574 141442950 -2839539 + THE1C LTR MaLR 1 375 0 924 225 91 4 chr12 141442967 141443360 -2839129 + MLT1D LTR MaLR 27 505 0 237 316 236 0 chr12 141443397 141443571 -2838918 + MIR SINE MIR 48 262 0 556 211 112 25 chr12 141443913 141444074 -2838415 - MER96 DNA MER1_type 0 175 1 2049 154 21 27 chr12 141444182 141444558 -2837931 + THE1C LTR MaLR 1 374 -1 1148 328 112 16 chr12 141445526 141446494 -2835995 + L2 LINE L2 1722 2782 -532 522 180 62 26 chr12 141446498 141446700 -2835789 + L1MA4 LINE L1 5468 5780 -511 180 0 0 0 chr12 141446700 141446720 -2835769 + (TA)n Simple_repeat Simple_repeat 2 21 0 1014 180 14 38 chr12 141447123 141447334 -2835155 + L1MA4 LINE L1 5822 6027 -273 318 169 46 0 chr12 141447338 141447403 -2835086 + L1MB3 LINE L1 6109 6176 -7 2341 89 3 13 chr12 141447417 141447732 -2834757 + AluSp SINE Alu 2 313 0 270 343 45 15 chr12 141447816 141448017 -2834472 + L2 LINE L2 2856 3062 -251 528 158 44 7 chr12 141450682 141451098 -2831391 + (TG)n Simple_repeat Simple_repeat 1 431 0 431 165 27 27 chr12 141451124 141451429 -2831060 + (TG)n Simple_repeat Simple_repeat 1 305 0 273 156 78 0 chr12 141451672 141451736 -2830753 + L1MA8 LINE L1 6218 6286 -5 825 306 34 18 chr12 141451831 141452158 -2830331 - MLT1J LTR MaLR -170 341 10 357 268 29 122 chr12 141452337 141452349 -2830140 + MIR SINE MIR 5 17 -245 1367 153 26 9 chr12 141452349 141452578 -2829911 - MER46A DNA MER2_type 0 236 4 357 268 29 122 chr12 141452578 141452811 -2829678 + MIR SINE MIR 17 227 -35 30 77 0 0 chr12 141454648 141454713 -2827776 + AT_rich Low_complexity Low_complexity 1 65 0 264 284 23 0 chr12 141455402 141455490 -2826999 - L2 LINE L2 -23 3290 3201 292 277 71 32 chr12 141455543 141455698 -2826791 + MIR SINE MIR 27 187 -75 732 209 7 13 chr12 141455896 141456049 -2826440 + MLT1B LTR MaLR 239 390 0 2155 122 0 0 chr12 141456867 141457153 -2825336 + AluSx SINE Alu 1 286 -26 232 305 78 8 chr12 141457625 141457753 -2824736 + MIR3 SINE MIR 49 185 -23 206 324 57 0 chr12 141459295 141459400 -2823089 - L2 LINE L2 0 3313 3203 287 267 151 18 chr12 141459402 141459685 -2822804 - L2 LINE L2 -265 3048 2730 2143 102 3 39 chr12 141459700 141460035 -2822454 - L1PB2 LINE L1 -2 6149 5827 972 100 0 44 chr12 141460037 141460197 -2822292 + L1PB2 LINE L1 5674 5826 -325 270 271 108 8 chr12 141460204 141460333 -2822156 - L2 LINE L2 -596 2718 2577 1966 199 133 81 chr12 141460683 141461428 -2821061 - LTR1B LTR ERV1 -42 784 1 361 317 154 0 chr12 141462863 141463090 -2819399 + MIR SINE MIR 1 262 0 216 302 151 0 chr12 141463124 141463210 -2819279 - L2 LINE L2 0 3272 3174 273 224 65 37 chr12 141463454 141463561 -2818928 - L1ME4a LINE L1 -1 6120 6011 715 173 7 50 chr12 141463705 141463844 -2818645 - FLAM_C SINE Alu 0 133 1 1913 131 32 11 chr12 141464015 141464297 -2818192 - AluJb SINE Alu -24 288 1 244 261 14 0 chr12 141464297 141464366 -2818123 - L1ME4a LINE L1 -504 5617 5548 2039 135 0 46 chr12 141464708 141465033 -2817456 - AluSx SINE Alu -2 310 1 280 290 45 11 chr12 141465068 141465244 -2817245 - L1ME4a LINE L1 -1435 4711 4530 339 353 162 20 chr12 141465950 141466352 -2816137 - L2 LINE L2 -349 2965 2507 478 272 187 29 chr12 141466622 141467136 -2815353 + L2 LINE L2 2353 2947 -367 297 180 0 0 chr12 141467237 141467326 -2815163 + (CA)n Simple_repeat Simple_repeat 1 89 0 450 183 11 17 chr12 141467341 141467516 -2814973 + (CA)n Simple_repeat Simple_repeat 1 174 0 599 115 0 68 chr12 141467552 141467744 -2814745 + (CA)n Simple_repeat Simple_repeat 2 180 0 293 309 120 34 chr12 141467757 141467932 -2814557 + L2 LINE L2 3107 3296 -17 207 204 0 0 chr12 141468661 141468705 -2813784 + MER5C DNA MER1_type 278 321 -3 2085 113 20 27 chr12 141469312 141469613 -2812876 - AluSx SINE Alu -13 299 1 856 255 114 32 chr12 141469685 141469928 -2812561 - L1ME4a LINE L1 -1891 4255 3970 2339 88 3 3 chr12 141469928 141470233 -2812256 - AluY SINE Alu -6 305 1 856 255 114 32 chr12 141470233 141470358 -2812131 - L1ME4a LINE L1 -2176 3970 3857 1410 160 92 17 chr12 141470515 141470808 -2811681 + L1MA6 LINE L1 5977 6291 -9 349 222 33 22 chr12 141470818 141470908 -2811581 + Charlie8 DNA MER1_type 95 185 -2232 1728 161 132 16 chr12 141470951 141471331 -2811158 - MSTA LTR MaLR 0 428 5 180 111 0 0 chr12 141472072 141472099 -2810390 + (CA)n Simple_repeat Simple_repeat 1 27 0 302 283 0 22 chr12 141472763 141472855 -2809634 - MLT1K LTR MaLR -495 93 4 454 70 42 0 chr12 141474896 141474967 -2807522 - AluS SINE Alu -238 75 2 308 388 0 14 chr12 141474994 141475141 -2807348 + L2 LINE L2 2907 3051 -221 27 0 0 0 chr12 141475189 141475216 -2807273 + AT_rich Low_complexity Low_complexity 1 27 0 2373 115 0 0 chr12 141475684 141475997 -2806492 - AluSq SINE Alu 0 313 1 200 344 22 0 chr12 141476230 141476320 -2806169 + MIR SINE MIR 56 147 -61 253 197 60 111 chr12 141476425 141476542 -2805947 + L1ME LINE L1 5629 5739 -382 1873 160 3 7 chr12 141476677 141476970 -2805519 - AluJo SINE Alu -20 292 1 242 318 64 27 chr12 141476973 141477083 -2805406 + MLT1J1 LTR MaLR 40 153 -293 2124 83 12 62 chr12 141477083 141477408 -2805081 - AluY SINE Alu 0 311 3 2613 68 11 0 chr12 141477410 141477762 -2804727 - L1PA8 LINE L1 0 6172 5817 252 338 29 15 chr12 141478870 141479006 -2803483 + MLT1K LTR MaLR 447 584 -4 1876 180 0 0 chr12 141479835 141480141 -2802348 - AluJb SINE Alu -6 306 1 279 287 16 70 chr12 141480148 141480277 -2802212 + Charlie8 DNA MER1_type 98 219 -2198 962 182 128 128 chr12 141480485 141480924 -2801565 + LTR45B LTR ERV1 51 489 0 297 185 0 0 chr12 141481317 141481382 -2801107 + (TG)n Simple_repeat Simple_repeat 1 65 0 256 276 98 68 chr12 141481388 141481423 -2801066 + MLT1L LTR MaLR 7 39 -576 1732 174 10 3 chr12 141481423 141481717 -2800772 + AluJb SINE Alu 3 298 -14 256 276 98 68 chr12 141481717 141481884 -2800605 + MLT1L LTR MaLR 39 221 -394 841 371 86 39 chr12 141481884 141482044 -2800445 + LTR37A LTR ERV1 1 152 -274 2015 142 7 0 chr12 141482044 141482340 -2800149 + AluSp SINE Alu 1 298 -15 841 371 86 39 chr12 141482340 141482586 -2799903 + LTR37A LTR ERV1 152 426 0 256 276 98 68 chr12 141482586 141482647 -2799842 + MLT1L LTR MaLR 221 279 -336 * 753 289 53 20 chr12 141482638 141482980 -2799509 + MLT1I LTR MaLR 15 367 -42 335 203 38 0 chr12 141483090 141483169 -2799320 - L1MB2 LINE L1 -2 6169 6088 560 299 51 20 chr12 141483170 141483424 -2799065 + MER34 LTR ERV1 1 262 -280 999 218 69 8 chr12 141483520 141483875 -2798614 + MER66A LTR ERV1 27 438 -40 608 266 13 62 chr12 141483894 141484120 -2798369 + MER34 LTR ERV1 328 542 0 3091 187 49 20 chr12 141484120 141484501 -2797988 - L1MB3 LINE L1 -81 6102 5693 2337 133 3 35 chr12 141484501 141484877 -2797612 - THE1B LTR MaLR 0 364 1 3091 187 49 20 chr12 141484877 141485148 -2797341 - L1MB3 LINE L1 -490 5693 5431 447 200 0 0 chr12 141485205 141485290 -2797199 + L1M3 LINE L1 5588 5672 -499 387 300 60 20 chr12 141485364 141485564 -2796925 + MLT1L LTR MaLR 401 608 -7 2290 108 39 31 chr12 141485899 141486259 -2796230 - THE1B LTR MaLR -1 363 1 292 270 0 0 chr12 141486610 141486673 -2795816 - AluJo SINE Alu -7 295 233 719 169 39 58 chr12 141486673 141486827 -2795662 - AluJo SINE Alu -153 159 9 2272 102 3 3 chr12 141486853 141487158 -2795331 - AluSg SINE Alu 0 310 6 2105 175 3 3 chr12 141487290 141487656 -2794833 - MER47A DNA MER2_type 0 366 1 606 306 24 0 chr12 141487966 141488172 -2794317 + MIR SINE MIR 51 261 -1 381 252 43 9 chr12 141488567 141488682 -2793807 - MIR SINE MIR -47 215 97 2238 124 0 0 chr12 141489222 141489529 -2792960 + AluJo SINE Alu 2 308 -4 180 236 216 61 chr12 141490046 141490194 -2792295 + MIR SINE MIR 86 256 -6 196 294 157 20 chr12 141490826 141490928 -2791561 - MIR SINE MIR -67 141 26 765 196 0 0 chr12 141491232 141491365 -2791124 - FLAM_A SINE Alu 0 133 1 288 317 30 0 chr12 141491616 141491717 -2790772 + MER103 DNA DNA 3 106 -60 226 340 131 0 chr12 141492162 141492315 -2790174 - MER5A DNA MER1_type 0 189 17 485 288 23 8 chr12 141492401 141492533 -2789956 - L2 LINE L2 -1 3271 3138 1143 257 17 3 chr12 141492735 141493027 -2789462 - MER68 LTR ERV1 -7 555 260 1578 153 120 9 chr12 141493038 141493364 -2789125 - THE1C LTR MaLR 0 375 14 2495 155 36 0 chr12 141493372 141493785 -2788704 + MSTA LTR MaLR 1 428 0 1447 201 8 0 chr12 141493785 141494048 -2788441 - MER68 LTR ERV1 -297 265 1 403 237 153 17 chr12 141494196 141494314 -2788175 + MIR SINE MIR 55 188 -74 562 262 51 33 chr12 141494405 141494619 -2787870 - MIR SINE MIR -3 259 42 1565 188 23 48 chr12 141494891 141495242 -2787247 + MLT1A2 LTR MaLR 1 342 -32 1980 104 16 32 chr12 141495489 141495798 -2786691 - AluSx SINE Alu -8 304 1 1673 158 14 3 chr12 141496263 141496548 -2785941 + AluJo SINE Alu 3 290 -22 251 303 61 0 chr12 141496573 141496672 -2785817 + MLT1I LTR MaLR 88 192 -217 249 234 106 92 chr12 141496713 141496854 -2785635 + MLT1J2 LTR MaLR 292 434 -16 562 356 11 0 chr12 141497610 141497801 -2784688 - MIR SINE MIR 0 262 70 465 159 9 26 chr12 141499104 141499217 -2783272 + GA-rich Low_complexity Low_complexity 2 112 0 1320 88 0 4 chr12 141499321 141499725 -2782764 + (GGGA)n Simple_repeat Simple_repeat 2 225 0 357 243 28 28 chr12 141499946 141500053 -2782436 + MLT1L LTR MaLR 507 613 -2 180 375 0 12 chr12 141500993 141501073 -2781416 + MIR SINE MIR 126 204 -58 263 191 48 0 chr12 141501073 141501136 -2781353 + (CATA)n Simple_repeat Simple_repeat 3 68 0 535 111 30 40 chr12 141501204 141501303 -2781186 + MER4A LTR ERV1 1 98 -566 1443 172 9 29 chr12 141501303 141501637 -2780852 + MER4A LTR ERV1 261 646 -18 299 271 29 57 chr12 141502025 141502165 -2780324 - MLT1K LTR MaLR -425 163 28 1757 131 3 61 chr12 141502753 141503081 -2779408 - AluSc SINE Alu 0 309 1 335 303 0 20 chr12 141503106 141503205 -2779284 + GA-rich Low_complexity Low_complexity 1 97 0 29 78 0 0 chr12 141503232 141503296 -2779193 + AT_rich Low_complexity Low_complexity 1 64 0 231 146 24 0 chr12 141503331 141503372 -2779117 + MER58 DNA MER1_type 2376 2417 -3 1704 135 3 75 chr12 141504212 141504531 -2777958 + AluJb SINE Alu 1 296 -16 2030 216 41 47 chr12 141504983 141505542 -2776947 + LTR38 LTR ERV1 1 556 0 1840 156 3 0 chr12 141506187 141506482 -2776007 - AluJb SINE Alu -16 296 1 279 79 0 0 chr12 141507387 141507425 -2775064 + (TG)n Simple_repeat Simple_repeat 2 39 0 250 244 77 103 chr12 141509467 141509845 -2772644 + L1ME LINE L1 5211 5582 -539 1994 109 7 23 chr12 141509845 141510010 -2772479 - AluSx SINE Alu -14 298 139 2182 108 13 0 chr12 141510010 141510316 -2772173 - AluSg SINE Alu 0 310 1 1994 109 7 23 chr12 141510316 141510453 -2772036 - AluSx SINE Alu -173 139 1 250 244 77 103 chr12 141510453 141510530 -2771959 + L1ME LINE L1 5582 5659 -462 277 144 155 31 chr12 141510884 141510981 -2771508 - Charlie7 DNA MER1_type -28 2584 2476 25 75 0 0 chr12 141511402 141511455 -2771034 + AT_rich Low_complexity Low_complexity 1 53 0 215 284 127 66 chr12 141511589 141511786 -2770703 + MIR SINE MIR 39 247 -15 31 44 0 0 chr12 141512709 141512754 -2769735 + AT_rich Low_complexity Low_complexity 1 45 0 222 316 0 0 chr12 141512754 141512811 -2769678 - MIR SINE MIR 0 262 206 2313 50 0 56 chr12 141512816 141513138 -2769351 - AluY SINE Alu -7 304 1 922 271 109 40 chr12 141513191 141513345 -2769144 - MER113 DNA MER1_type? -5 516 374 1689 159 0 7 chr12 141513345 141513640 -2768849 - AluJo SINE Alu 0 312 20 922 271 109 40 chr12 141513640 141513961 -2768528 - MER113 DNA MER1_type? -147 374 8 21 36 0 0 chr12 141514119 141514147 -2768342 + AT_rich Low_complexity Low_complexity 1 28 0 1725 171 0 38 chr12 141514697 141515013 -2767476 + AluJo SINE Alu 1 304 -8 2918 152 23 17 chr12 141516584 141517059 -2765430 - MER66A LTR ERV1 0 478 1 535 289 186 12 chr12 141517108 141517882 -2764607 - L1MEc LINE L1 -4583 1813 790 492 274 104 54 chr12 141518522 141518763 -2763726 + MLT1H1 LTR MaLR 32 256 -299 280 109 55 18 chr12 141519083 141519138 -2763351 - MADE1 DNA Mariner 0 80 24 289 372 98 6 chr12 141520570 141520753 -2761736 - MIR SINE MIR -6 256 57 277 261 98 0 chr12 141522402 141522494 -2759995 + L1MC/D LINE L1 5668 5768 -2040 720 215 145 3 chr12 141522636 141522930 -2759559 - MER58 DNA MER1_type 0 2420 1 2071 132 0 0 chr12 141523152 141523463 -2759026 + AluJb SINE Alu 1 311 -1 426 310 113 0 chr12 141525106 141525309 -2757180 - MIR SINE MIR -15 247 22 481 281 24 12 chr12 141525605 141525769 -2756720 - MIR SINE MIR -95 167 2 351 259 91 21 chr12 141525851 141525994 -2756495 + MLT1A1 LTR MaLR 1 153 -212 426 310 113 0 chr12 141529555 141529758 -2752731 - MIR SINE MIR -15 247 22 481 281 24 12 chr12 141530054 141530218 -2752271 - MIR SINE MIR -95 167 2 351 259 91 21 chr12 141530300 141530443 -2752046 + MLT1A1 LTR MaLR 1 153 -212 871 230 17 50 chr12 141532378 141532614 -2749875 + MLT1A1 LTR MaLR 111 338 -27 571 77 13 0 chr12 141532614 141532692 -2749797 - MADE1 DNA Mariner 0 80 2 467 272 92 44 chr12 141532712 141532768 -2749721 + Charlie8 DNA MER1_type 55 107 -223 1749 206 60 86 chr12 141532768 141533337 -2749152 + MLT2B3 LTR ERVL 1 554 0 467 272 92 44 chr12 141533337 141533486 -2749003 + Charlie8 DNA MER1_type 107 270 -60 720 214 23 139 chr12 141533515 141533860 -2748629 + LTR37B LTR ERV1 6 310 -158 195 204 0 0 chr12 141533862 141533906 -2748583 + (TA)n Simple_repeat Simple_repeat 1 44 0 2483 103 11 21 chr12 141533955 141534334 -2748155 - THE1C LTR MaLR 0 375 1 3181 149 56 87 chr12 141534497 141534797 -2747692 + LTR8A LTR ERV1 1 309 -418 1981 112 27 0 chr12 141534797 141535091 -2747398 + AluSx SINE Alu 1 302 -10 3181 149 56 87 chr12 141535091 141535540 -2746949 + LTR8A LTR ERV1 309 727 0 821 260 93 60 chr12 141537186 141537239 -2745250 + MLT1K LTR MaLR 163 213 -375 1158 255 115 45 chr12 141537239 141537769 -2744720 + MLT1F1 LTR MaLR 1 567 0 821 260 93 60 chr12 141537769 141538100 -2744389 + MLT1K LTR MaLR 213 560 -28 261 254 92 60 chr12 141538496 141538681 -2743808 - L2 LINE L2 -241 3031 2841 322 197 53 0 chr12 141538905 141538981 -2743508 - L2 LINE L2 -587 2727 2648 477 320 103 0 chr12 141539030 141539224 -2743265 - MIR SINE MIR -18 244 31 4302 187 24 54 chr12 141539399 141539552 -2742937 + L1MA9 LINE L1 5347 5503 -809 3070 34 3 21 chr12 141539552 141539931 -2742558 + L1PA4 LINE L1 5784 6155 0 4302 187 24 54 chr12 141539931 141540283 -2742206 + L1MA9 LINE L1 5503 5864 -448 1705 160 0 38 chr12 141540283 141540602 -2741887 + AluJo SINE Alu 1 307 -5 4302 187 24 54 chr12 141540602 141541089 -2741400 + L1MA9 LINE L1 5864 6310 -2 228 243 126 27 chr12 141541119 141541230 -2741259 + L1ME1 LINE L1 5936 6057 -109 248 261 33 33 chr12 141541602 141541703 -2740786 + L1ME1 LINE L1 6059 6162 -4 1341 212 58 18 chr12 141542633 141542959 -2739530 + MER2 DNA MER2_type 7 345 0 229 366 0 0 chr12 141543199 141543281 -2739208 + MER21B LTR ERV1 3 84 -779 1688 142 23 0 chr12 141543335 141543595 -2738894 - AluJo SINE Alu -41 271 6 573 257 76 85 chr12 141543729 141544071 -2738418 + MER21B LTR ERV1 262 600 -263 532 244 16 16 chr12 141544150 141544277 -2738212 + MER21B LTR ERV1 613 739 -124 675 264 63 53 chr12 141544565 141544868 -2737621 + MLT1K LTR MaLR 283 588 0 420 268 0 0 chr12 141544943 141545025 -2737464 - MER63 DNA MER1_type -2 1059 978 1049 211 46 4 chr12 141547355 141547616 -2734873 + L1MA8 LINE L1 6020 6291 0 910 110 0 0 chr12 141547616 141547743 -2734746 + AluSg/x SINE Alu 174 300 -12 22 0 0 54 chr12 141547746 141547762 -2734727 + AT_rich Low_complexity Low_complexity 1 16 -19 863 133 21 0 chr12 141547762 141547905 -2734584 + L1MA9 LINE L1 6162 6307 -5 22 0 0 54 chr12 141547905 141547925 -2734564 + AT_rich Low_complexity Low_complexity 16 35 0 851 283 40 43 chr12 141547925 141548011 -2734478 + MER58B DNA MER1_type 1 86 -2334 1981 75 93 0 chr12 141548011 141548290 -2734199 - AluSp SINE Alu -6 307 3 851 283 40 43 chr12 141548290 141548532 -2733957 + MER58B DNA MER1_type 86 328 -13 376 176 15 0 chr12 141548639 141548707 -2733782 - MLT1A1 LTR MaLR -8 357 289 861 126 0 0 chr12 141548855 141548982 -2733507 + AluSg/x SINE Alu 172 298 -12 764 164 13 20 chr12 141549000 141549152 -2733337 + L1MA9 LINE L1 6162 6312 0 798 289 40 43 chr12 141549163 141549249 -2733240 + MER58B DNA MER1_type 1 86 -2334 1834 96 89 4 chr12 141549249 141549530 -2732959 - AluSp SINE Alu -6 307 3 798 289 40 43 chr12 141549530 141549772 -2732717 + MER58B DNA MER1_type 86 328 -13 673 216 16 4 chr12 141549879 141550052 -2732437 - MLT1A1 LTR MaLR -8 357 194 240 183 67 17 chr12 141550701 141550761 -2731728 + MIR SINE MIR 110 172 -90 228 250 159 11 chr12 141550959 141551047 -2731442 - MER5A DNA MER1_type -58 131 31 1795 156 7 3 chr12 141551237 141551544 -2730945 - AluJo SINE Alu -4 308 1 1728 36 5 18 chr12 141551784 141552007 -2730482 + L1PA4 LINE L1 5936 6155 0 26 0 0 0 chr12 141552493 141552519 -2729970 + AT_rich Low_complexity Low_complexity 1 26 0 639 306 97 21 chr12 141552620 141553003 -2729486 - MLT1K LTR MaLR -38 550 139 2100 115 7 0 chr12 141553135 141553430 -2729059 + AluSx SINE Alu 1 297 -15 311 195 195 0 chr12 141553819 141553906 -2728583 + L1MA10 LINE L1 6229 6332 -2 1853 200 30 5 chr12 141553995 141554365 -2728124 - MLT1B LTR MaLR -11 379 1 272 267 76 61 chr12 141554658 141554789 -2727700 - L2 LINE L2 0 3313 3181 2336 99 48 22 chr12 141555005 141555360 -2727129 + THE1B LTR MaLR 1 364 0 339 203 129 36 chr12 141556377 141556606 -2725883 + MER76 LTR ERV 129 465 -223 595 312 35 26 chr12 141557792 141558023 -2724466 + MIR SINE MIR 9 241 -21 305 129 0 16 chr12 141559653 141559703 -2722786 + (CATCC)n Simple_repeat Simple_repeat 5 55 -10 2309 148 57 34 chr12 141559703 141560121 -2722368 - MSTA LTR MaLR 0 428 1 305 129 0 16 chr12 141560121 141560132 -2722357 + (CATCC)n Simple_repeat Simple_repeat 55 65 0 229 267 40 0 chr12 141560177 141560252 -2722237 + MER112 DNA MER1_type 156 233 -27 2061 133 0 0 chr12 141561070 141561370 -2721119 + AluSq SINE Alu 3 302 -11 394 217 0 100 chr12 141561611 141561662 -2720827 + L1MA9 LINE L1 6167 6201 -111 2167 102 0 3 chr12 141561662 141561956 -2720533 - AluSx SINE Alu -14 298 6 394 217 0 100 chr12 141561956 141562024 -2720465 + L1MA9 LINE L1 6201 6274 -38 312 215 15 0 chr12 141562939 141563004 -2719485 - MLT1I LTR MaLR -278 131 66 322 303 78 82 chr12 141563340 141563438 -2719051 - L2 LINE L2 -305 3008 2911 1960 126 7 0 chr12 141563438 141563731 -2718758 - AluSx SINE Alu -17 295 1 322 303 78 82 chr12 141563731 141564091 -2718398 - L2 LINE L2 -402 2911 2550 666 115 0 0 chr12 141564442 141564538 -2717951 - L1MA3 LINE L1 0 6305 6210 374 206 9 19 chr12 141564609 141564716 -2717773 - L1M4 LINE L1 -4906 1636 1531 2359 281 77 35 chr12 141564718 141564854 -2717635 + L2 LINE L2 1848 1977 -1337 1907 146 0 16 chr12 141564854 141565170 -2717319 + AluSx SINE Alu 1 311 -1 2359 281 77 35 chr12 141565170 141565996 -2716493 + L2 LINE L2 1977 2850 -464 349 286 175 48 chr12 141566033 141566302 -2716187 + L2 LINE L2 2967 3269 -44 1216 223 147 31 chr12 141566748 141567197 -2715292 - MLT1D LTR MaLR 0 505 5 332 343 0 34 chr12 141567458 141567604 -2714885 + MARNA DNA Mariner 432 572 -14 1885 137 0 14 chr12 141567646 141567938 -2714551 - AluSx SINE Alu -24 288 1 1775 104 4 0 chr12 141568826 141569067 -2713422 + THE1C LTR MaLR 1 242 -133 2672 118 3 0 chr12 141569074 141569448 -2713041 - THE1C LTR MaLR 0 375 1 732 268 76 18 chr12 141569449 141569673 -2712816 - MIR SINE MIR -25 237 1 1728 164 3 10 chr12 141569866 141570170 -2712319 + AluJb SINE Alu 1 302 -10 282 307 58 35 chr12 141571380 141571713 -2710776 + MLT1K LTR MaLR 168 554 -34 839 136 0 34 chr12 141571885 141572032 -2710457 + AluJo SINE Alu 1 142 -170 510 328 28 50 chr12 141572047 141572404 -2710085 + MLT1K LTR MaLR 225 573 -15 435 259 18 18 chr12 141572457 141572569 -2709920 - MER81 DNA DNA 0 114 3 469 297 40 27 chr12 141572662 141572810 -2709679 - MIR SINE MIR -13 249 100 491 202 29 10 chr12 141573069 141573173 -2709316 - LTR67 LTR ERVL 0 557 452 340 258 108 25 chr12 141573370 141573490 -2708999 - MLT1K LTR MaLR -181 407 278 1129 230 56 70 chr12 141573542 141573962 -2708527 + MLT1C LTR MaLR 46 467 0 240 276 26 13 chr12 141573976 141574052 -2708437 - MLT1K LTR MaLR -319 269 193 253 266 31 0 chr12 141574159 141574223 -2708266 - MIR3 SINE MIR -52 156 91 330 364 35 35 chr12 141574233 141574431 -2708058 - MLT1K LTR MaLR -368 220 23 1584 175 57 87 chr12 141574432 141574833 -2707656 + MLT1B LTR MaLR 1 389 -1 674 284 123 69 chr12 141574964 141575313 -2707176 + MLT1J2 LTR MaLR 37 404 -46 189 94 0 0 chr12 141575653 141575685 -2706804 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 917 181 0 0 chr12 141575686 141575841 -2706648 - AluSq SINE Alu -32 281 127 246 185 93 0 chr12 141575845 141575899 -2706590 - MLT1K LTR MaLR -17 571 513 22 35 0 0 chr12 141576491 141576520 -2705969 + AT_rich Low_complexity Low_complexity 1 29 0 2350 70 10 0 chr12 141576971 141577272 -2705217 + AluY SINE Alu 1 304 -7 230 270 159 0 chr12 141577386 141577449 -2705040 + MLT1L LTR MaLR 322 394 -221 389 316 103 7 chr12 141577592 141577728 -2704761 - MIR SINE MIR -113 149 1 2163 119 0 0 chr12 141577831 141578133 -2704356 - AluSx SINE Alu -10 302 1 761 168 23 0 chr12 141578506 141578637 -2703852 + AluSq/x SINE Alu 1 134 -178 1995 122 52 52 chr12 141578737 141579036 -2703453 + MER61A LTR ERV1 1 302 -41 2314 88 0 3 chr12 141579036 141579343 -2703146 - AluY SINE Alu -5 306 1 1995 122 52 52 chr12 141579343 141579386 -2703103 + MER61A LTR ERV1 301 343 0 1739 178 7 0 chr12 141580056 141580359 -2702130 - AluJb SINE Alu -4 308 4 32 0 0 0 chr12 141581937 141581969 -2700520 + AT_rich Low_complexity Low_complexity 1 32 0 285 300 0 0 chr12 141582054 141582124 -2700365 + L3 LINE CR1 1500 1569 -8 338 323 31 15 chr12 141582167 141582283 -2700206 - L2 LINE L2 -4 3309 3189 225 0 0 0 chr12 141582283 141582308 -2700181 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 338 323 31 15 chr12 141582308 141582321 -2700168 - L2 LINE L2 -124 3189 3178 195 162 0 0 chr12 141582823 141582860 -2699629 + CT-rich Low_complexity Low_complexity 3 39 0 1969 114 3 26 chr12 141582859 141583345 -2699144 - AluSq SINE Alu 0 479 1 303 216 27 0 chr12 141583442 141583516 -2698973 + MIR SINE MIR 66 141 -121 1350 168 77 32 chr12 141583910 141584195 -2698294 - AluJo SINE Alu -14 298 1 339 241 11 0 chr12 141584453 141584540 -2697949 - LTR33 LTR ERVL -8 513 426 355 294 77 60 chr12 141584592 141584840 -2697649 - LTR33 LTR ERVL -235 286 35 710 251 101 36 chr12 141585639 141585886 -2696603 - LTR19C LTR ERV1 -29 750 488 * 1338 219 20 79 chr12 141585874 141586281 -2696208 - LTR9 LTR ERV1 -229 383 1 828 233 146 40 chr12 141586276 141586753 -2695736 - MLT1E LTR MaLR -1 653 21 * 468 297 154 10 chr12 141587789 141588082 -2694407 - MER113 DNA MER1_type? -84 437 103 289 279 94 75 chr12 141588162 141588363 -2694126 + MLT2E LTR ERVL 3 207 -421 729 250 57 22 chr12 141589212 141589440 -2693049 + MLT1I LTR MaLR 174 409 0 242 196 109 54 chr12 141589471 141589563 -2692926 + MER112 DNA MER1_type 132 228 -32 398 331 8 8 chr12 141590921 141591045 -2691444 - L2 LINE L2 0 3313 3190 3032 156 24 7 chr12 141591053 141591788 -2690701 + L1M2 LINE L1 5058 5807 -493 798 50 0 0 chr12 141591770 141591870 -2690619 - L1PA13 LINE L1 -360 5814 5715 * 2468 66 3 0 chr12 141591870 141592181 -2690308 + L1PA13 LINE L1 5827 6144 -19 1539 74 23 14 chr12 141592186 141592403 -2690086 + L1MA6 LINE L1 5773 5991 -309 422 362 20 12 chr12 141592411 141592657 -2689832 - L2 LINE L2 -112 3201 2954 915 146 57 6 chr12 141592683 141592841 -2689648 - MER20 DNA MER1_type -53 166 1 491 325 67 10 chr12 141592841 141593050 -2689439 - L2 LINE L2 -353 2961 2741 235 320 148 0 chr12 141593077 141593205 -2689284 + LTR33 LTR ERVL 2 148 -373 316 299 58 36 chr12 141593219 141593356 -2689133 + LTR33 LTR ERVL 292 431 -90 23 54 0 0 chr12 141594535 141594572 -2687917 + AT_rich Low_complexity Low_complexity 1 37 0 5252 215 66 38 chr12 141594710 141596891 -2685598 + L1MDa LINE L1 17 2632 -3908 1021 184 44 10 chr12 141596891 141597097 -2685392 + L1PB3 LINE L1 5941 6153 -1 5252 215 66 38 chr12 141597097 141598289 -2684200 + L1MDa LINE L1 2632 3789 -2751 1578 27 5 0 chr12 141598396 141598580 -2683909 - L1PA5 LINE L1 -4 6150 5966 731 23 11 0 chr12 141598580 141598667 -2683822 + L1PA5 LINE L1 5866 5953 -201 5206 139 12 8 chr12 141598824 141599665 -2682824 - L1PB4 LINE L1 -4 6152 5309 244 295 38 153 chr12 141600462 141600750 -2681739 + L2 LINE L2 2976 3230 -42 769 326 157 26 chr12 141600797 141601322 -2681167 - L2 LINE L2 -337 2977 2349 1765 196 34 28 chr12 141601322 141601709 -2680780 + MLT1B LTR MaLR 2 390 0 769 326 157 26 chr12 141601709 141601833 -2680656 - L2 LINE L2 -965 2349 2243 239 246 0 62 chr12 141601804 141601869 -2680620 + L2 LINE L2 3253 3313 0 * 3099 140 81 10 chr12 141602356 141602848 -2679641 - MER1A DNA MER1_type 0 527 1 343 179 0 0 chr12 141606238 141606294 -2676195 + Tigger4(Zombi) DNA MER2_type 2676 2731 0 646 229 109 46 chr12 141607282 141607457 -2675032 + MLT1G LTR MaLR 340 525 -65 339 228 51 92 chr12 141607666 141607986 -2674503 + L1MC5 LINE L1 7609 8002 -40 501 299 35 17 chr12 141608389 141608563 -2673926 - Charlie8 DNA MER1_type -2208 209 33 267 250 135 21 chr12 141609222 141609318 -2673171 - L2 LINE L2 0 3313 3207 1880 187 13 40 chr12 141610081 141610456 -2672033 + MLT1A1 LTR MaLR 1 365 0 234 150 0 0 chr12 141611462 141611502 -2670987 + (CA)n Simple_repeat Simple_repeat 2 41 0 1110 196 27 5 chr12 141612367 141612586 -2669903 - MER58A DNA MER1_type 0 224 1 189 214 0 0 chr12 141613401 141613443 -2669046 + (TA)n Simple_repeat Simple_repeat 1 42 0 368 306 71 20 chr12 141613727 141614056 -2668433 - MLT1I LTR MaLR 0 409 32 846 189 0 0 chr12 141615618 141615900 -2666589 + (CAT)n Simple_repeat Simple_repeat 1 282 0 403 338 90 0 chr12 141616013 141616059 -2666430 + Charlie8 DNA MER1_type 35 75 -266 198 0 0 0 chr12 141616059 141616081 -2666408 + (TTG)n Simple_repeat Simple_repeat 2 23 0 403 338 90 0 chr12 141616081 141616256 -2666233 + Charlie8 DNA MER1_type 75 276 -65 333 254 33 33 chr12 141616704 141616826 -2665663 + L1M4 LINE L1 5194 5315 -831 551 288 32 18 chr12 141617540 141617759 -2664730 + MLT1J LTR MaLR 4 225 -286 256 340 197 5 chr12 141617919 141618122 -2664367 + LTR16A LTR ERVL 202 443 -7 227 256 128 13 chr12 141618514 141618592 -2663897 + L2 LINE L2 3227 3313 0 389 285 97 21 chr12 141618721 141618907 -2663582 - MIR SINE MIR -35 227 28 355 272 93 62 chr12 141619190 141619352 -2663137 - MLT1J2 LTR MaLR -8 442 276 228 308 13 0 chr12 141619425 141619503 -2662986 - LTR37A LTR ERV1 -226 200 122 2182 109 0 3 chr12 141619673 141619984 -2662505 - AluSx SINE Alu -2 310 1 2564 39 0 0 chr12 141620023 141620328 -2662161 - AluY SINE Alu -6 305 1 437 167 26 2 chr12 141620380 141620472 -2662017 - MLT1J2 LTR MaLR -277 185 93 247 361 65 19 chr12 141620604 141620712 -2661777 - MER5A DNA MER1_type -18 171 59 182 374 26 32 chr12 141620609 141620764 -2661725 + MER5A DNA MER1_type 35 188 -1 * 3005 111 2 0 chr12 141621844 141622268 -2660221 + L1PA11 LINE L1 5750 6174 0 884 244 130 38 chr12 141622699 141623122 -2659367 - MLT1L LTR MaLR -9 606 145 293 241 92 51 chr12 141623733 141623928 -2658561 + LTR33 LTR ERVL 298 500 -21 214 269 174 34 chr12 141624682 141624831 -2657658 + MIR SINE MIR 92 261 -1 444 286 123 70 chr12 141624919 141625261 -2657228 - MLT1K LTR MaLR -90 498 139 637 263 37 0 chr12 141625272 141625639 -2656850 - MLT1K LTR MaLR -341 247 84 450 268 9 18 chr12 141625919 141626031 -2656458 + MIR SINE MIR 106 216 -46 401 297 73 23 chr12 141626664 141626883 -2655606 - MLT1K LTR MaLR -12 576 347 256 221 35 110 chr12 141627990 141628135 -2654354 + MLT1K LTR MaLR 329 462 -126 623 241 14 10 chr12 141628344 141628510 -2653979 - MLT1A1 LTR MaLR -216 149 2 450 347 21 19 chr12 141630639 141630982 -2651507 + GA-rich Low_complexity Low_complexity 1 343 0 703 247 132 18 chr12 141631087 141631306 -2651183 - Charlie8 DNA MER1_type -2172 245 2 229 378 74 7 chr12 141631335 141631483 -2651006 + MIR SINE MIR 59 216 -46 919 257 72 0 chr12 141631869 141632091 -2650398 - MIR SINE MIR 0 262 25 229 324 68 0 chr12 141632712 141632786 -2649703 - MLT1K LTR MaLR -506 82 4 2200 85 0 0 chr12 141632871 141633164 -2649325 + AluSg SINE Alu 18 310 0 1661 145 6 63 chr12 141633728 141633851 -2648638 + AluJo SINE Alu 2 130 -182 1782 144 10 7 chr12 141633851 141634150 -2648339 - AluSx SINE Alu -12 300 1 1661 145 6 63 chr12 141634150 141634343 -2648146 + AluJo SINE Alu 130 300 -12 1403 183 4 19 chr12 141634623 141634891 -2647598 - AluJo SINE Alu -26 286 23 965 149 23 29 chr12 141635048 141635222 -2647267 + MER20 DNA MER1_type 46 218 -1 5346 122 109 122 chr12 141635228 141636772 -2645717 + pTR5 LTR ERV1 743 2438 0 288 0 0 0 chr12 141636902 141636934 -2645555 + (CA)n Simple_repeat Simple_repeat 2 33 0 190 193 35 0 chr12 141637019 141637076 -2645413 + GA-rich Low_complexity Low_complexity 2 60 0 1592 173 7 10 chr12 141638158 141638453 -2644036 + AluJo SINE Alu 1 294 -18 2041 121 13 0 chr12 141638456 141638754 -2643735 + AluSx SINE Alu 1 302 -10 238 282 77 0 chr12 141638839 141638917 -2643572 + MIR3 SINE MIR 94 177 -31 539 281 135 42 chr12 141639103 141639330 -2643159 - L2 LINE L2 -47 3266 3062 2103 131 0 0 chr12 141639330 141639628 -2642861 + AluSx SINE Alu 1 298 -14 539 281 135 42 chr12 141639628 141639971 -2642518 - L2 LINE L2 -251 3062 2593 1949 116 39 3 chr12 141640043 141640327 -2642162 + AluSx SINE Alu 1 294 -18 1504 168 42 3 chr12 141641119 141641286 -2641203 - AluJo SINE Alu -14 298 114 354 45 0 0 chr12 141641286 141641330 -2641159 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1504 168 42 3 chr12 141641330 141641447 -2641042 - AluJo SINE Alu -198 114 3 718 208 0 8 chr12 141641461 141641591 -2640898 - FLAM_C SINE Alu -3 130 2 199 356 22 11 chr12 141641663 141641753 -2640736 + MIR3 SINE MIR 103 193 -15 182 170 36 27 chr12 141642809 141642921 -2639568 + (CA)n Simple_repeat Simple_repeat 1 113 0 276 154 49 0 chr12 141642963 141643086 -2639403 + (CA)n Simple_repeat Simple_repeat 1 129 0 277 161 54 0 chr12 141643109 141643258 -2639231 + (CA)n Simple_repeat Simple_repeat 1 157 0 282 184 33 4 chr12 141643344 141643587 -2638902 + (CA)n Simple_repeat Simple_repeat 1 250 0 439 256 66 40 chr12 141643643 141643877 -2638612 - MIR SINE MIR -19 243 7 2325 75 0 10 chr12 141644054 141644362 -2638127 - AluY SINE Alu -5 306 2 482 282 121 11 chr12 141644502 141644676 -2637813 - MIR SINE MIR -14 248 56 1944 131 154 34 chr12 141644773 141645155 -2637334 + MSTA LTR MaLR 1 428 0 312 297 11 11 chr12 141645309 141645400 -2637089 + L2 LINE L2 3183 3273 -40 1026 249 68 53 chr12 141645467 141645865 -2636624 + MLT1C LTR MaLR 64 467 0 1705 174 0 22 chr12 141646100 141646417 -2636072 + AluJo SINE Alu 1 310 -2 1575 184 7 48 chr12 141647506 141647816 -2634673 - AluJo SINE Alu -15 297 1 1147 227 77 50 chr12 141648433 141648874 -2633615 + MLT1C LTR MaLR 6 458 -9 438 344 57 19 chr12 141649038 141649250 -2633239 + MIR SINE MIR 22 241 -21 2660 101 3 34 chr12 141649422 141649809 -2632680 + THE1C LTR MaLR 1 375 0 10882 108 33 10 chr12 141649809 141651353 -2631136 + THE1C-int LTR MaLR 1 1580 0 2753 89 16 3 chr12 141651353 141651723 -2630766 + THE1C LTR MaLR 1 375 0 664 288 103 4 chr12 141652629 141652862 -2629627 - MIR SINE MIR -3 259 4 3484 162 19 7 chr12 141653332 141653924 -2628565 - MER7C DNA MER2_type -3 599 1 687 274 39 10 chr12 141653995 141654199 -2628290 - MER63A DNA MER1_type 0 210 1 211 304 0 0 chr12 141654206 141654262 -2628227 + MIR SINE MIR 20 75 -133 2028 127 7 0 chr12 141654315 141654591 -2627898 + AluSx SINE Alu 1 278 -34 2431 142 49 5 chr12 141654966 141655374 -2627115 + MSTB LTR MaLR 1 426 0 2172 157 75 10 chr12 141655490 141655891 -2626598 - MSTC LTR MaLR -1 427 1 216 0 0 0 chr12 141656115 141656139 -2626350 + (TC)n Simple_repeat Simple_repeat 1 24 0 653 287 65 56 chr12 141656420 141656774 -2625715 - L1ME3A LINE L1 -89 6081 5721 1417 188 55 89 chr12 141656774 141657178 -2625311 - MLT1B LTR MaLR 0 390 1 653 287 65 56 chr12 141657178 141657252 -2625237 - L1ME3A LINE L1 -449 5721 5649 563 284 144 19 chr12 141657529 141657744 -2624745 - MIR SINE MIR -6 256 15 973 292 60 21 chr12 141657793 141658310 -2624179 - MLT1L LTR MaLR -34 581 45 1540 98 213 4 chr12 141658850 141659094 -2623395 - AluSg1 SINE Alu -12 297 3 1031 118 0 7 chr12 141659095 141659231 -2623258 - AluSq/x SINE Alu -177 136 2 2203 133 36 28 chr12 141659721 141660082 -2622407 - THE1B LTR MaLR 0 364 1 456 209 0 9 chr12 141660202 141660307 -2622182 - L1MB1 LINE L1 -13 6176 6073 664 332 29 0 chr12 141660606 141660850 -2621639 - MIR SINE MIR -3 259 9 373 281 32 56 chr12 141660961 141661141 -2621348 + MIR SINE MIR 17 190 -63 1778 116 8 0 chr12 141661469 141661711 -2620778 + AluSx SINE Alu 53 296 -16 268 299 71 39 chr12 141662233 141662360 -2620129 - MIR SINE MIR -25 237 107 1230 190 62 6 chr12 141662432 141662890 -2619599 - MLT1F1 LTR MaLR -7 560 3 620 266 13 0 chr12 141664198 141664352 -2618137 - MIR SINE MIR -62 200 45 302 170 0 0 chr12 141664689 141664742 -2617747 - L1ME4a LINE L1 -104 6017 5965 2618 122 5 3 chr12 141665301 141665671 -2616818 - THE1C LTR MaLR 0 375 5 251 300 163 18 chr12 141665707 141665845 -2616644 - MIR SINE MIR -39 169 13 204 261 0 15 chr12 141665866 141665931 -2616558 + GA-rich Low_complexity Low_complexity 1 64 0 461 244 66 16 chr12 141666220 141666448 -2616041 + MLT1H1 LTR MaLR 27 314 -241 293 125 0 0 chr12 141666554 141666602 -2615887 + AluJ/FLAM SINE Alu 41 88 -214 180 111 0 0 chr12 141666622 141666649 -2615840 + (CA)n Simple_repeat Simple_repeat 2 28 0 278 343 53 18 chr12 141666957 141667126 -2615363 - MLT1J LTR MaLR -310 201 27 462 264 56 8 chr12 141667148 141667273 -2615216 + L2 LINE L2 3175 3305 -8 199 312 114 15 chr12 141667663 141667840 -2614649 - L3b LINE CR1 -182 1401 1200 2107 91 3 67 chr12 141667840 141668170 -2614319 - AluSg SINE Alu -1 309 1 199 312 114 15 chr12 141668170 141668194 -2614295 - L3b LINE CR1 -383 1200 1180 647 244 70 43 chr12 141668319 141668549 -2613940 + MLT1J1 LTR MaLR 209 444 -2 1903 149 3 3 chr12 141668646 141668942 -2613547 + AluSx SINE Alu 1 296 -16 441 129 0 0 chr12 141668942 141669012 -2613477 + (GGGA)n Simple_repeat Simple_repeat 3 72 0 210 221 79 93 chr12 141670435 141670575 -2611914 - MIR SINE MIR -5 257 120 241 217 39 23 chr12 141670652 141670781 -2611708 + (TATG)n Simple_repeat Simple_repeat 1 131 0 227 300 0 14 chr12 141670847 141670917 -2611572 + (TG)n Simple_repeat Simple_repeat 2 70 0 341 346 33 16 chr12 141671117 141671299 -2611190 + L1ME2 LINE L1 5197 5381 -765 188 344 108 0 chr12 141671603 141671696 -2610793 - L2 LINE L2 -569 2745 2643 439 280 143 67 chr12 141671794 141672269 -2610220 - LTR67 LTR ERVL -11 546 36 306 330 103 0 chr12 141673321 141673524 -2608965 + MIR SINE MIR 24 247 -15 388 227 31 55 chr12 141674798 141674961 -2607528 - L1ME3A LINE L1 -2 6168 6010 258 32 0 0 chr12 141675094 141675125 -2607364 + (GA)n Simple_repeat Simple_repeat 1 31 0 254 222 97 0 chr12 141675802 141675874 -2606615 + L1ME2 LINE L1 5363 5441 -729 1632 273 14 0 chr12 141675877 141676316 -2606173 + L1MB5 LINE L1 5730 6174 0 331 221 35 0 chr12 141676344 141676430 -2606059 + L1ME2 LINE L1 5428 5516 -646 1733 250 50 32 chr12 141676493 141676532 -2605957 + L1ME2 LINE L1 5527 5564 -600 1788 167 34 78 chr12 141676532 141676940 -2605549 - MLT1B LTR MaLR 0 390 1 1733 250 50 32 chr12 141676940 141677339 -2605150 + L1ME2 LINE L1 5564 5980 -184 2418 102 0 3 chr12 141677339 141677644 -2604845 + AluSx SINE Alu 1 304 -8 1733 250 50 32 chr12 141677644 141677769 -2604720 + L1ME2 LINE L1 5980 6101 -63 1633 145 0 46 chr12 141677770 141678052 -2604437 + AluJo SINE Alu 44 312 0 2458 119 8 22 chr12 141678200 141678569 -2603920 - THE1B LTR MaLR 0 364 1 544 300 53 0 chr12 141680427 141680617 -2601872 + MER20 DNA MER1_type 16 215 -4 212 295 90 30 chr12 141680657 141680823 -2601666 - L2 LINE L2 -252 3061 2886 413 258 59 54 chr12 141681905 141682091 -2600398 + Charlie8 DNA MER1_type 5 191 -2226 453 280 42 42 chr12 141682115 141682343 -2600146 - MIR SINE MIR -25 237 4 2668 202 18 12 chr12 141682419 141683022 -2599467 + L1MB3 LINE L1 5551 6157 -26 2288 104 3 3 chr12 141683072 141683369 -2599120 + AluSx SINE Alu 1 297 -15 1301 87 0 0 chr12 141683369 141683541 -2598948 - L1MA2 LINE L1 -9 6295 6124 1078 312 90 4 chr12 141683984 141684452 -2598037 + MER20B DNA MER1_type 15 522 -261 835 241 26 4 chr12 141684577 141684843 -2597646 - L1MA4 LINE L1 -1 6299 6028 1389 153 5 5 chr12 141684895 141685111 -2597378 - AluJo SINE Alu -96 216 1 300 194 0 56 chr12 141685496 141685568 -2596921 - L2 LINE L2 -1 3271 3204 239 182 71 101 chr12 141686047 141686146 -2596343 + L2 LINE L2 3159 3254 -18 235 208 21 0 chr12 141686455 141686503 -2595986 + Charlie8 DNA MER1_type 2369 2417 0 2473 77 0 6 chr12 141686998 141687311 -2595178 + AluY SINE Alu 1 311 0 1269 230 17 14 chr12 141688113 141688461 -2594028 + MLT1A1 LTR MaLR 13 361 -4 321 302 47 0 chr12 141690321 141690450 -2592039 - L1ME3A LINE L1 0 6170 6036 308 316 26 19 chr12 141690474 141690629 -2591860 - L1ME3A LINE L1 -2222 5586 5431 2331 93 0 10 chr12 141690633 141690934 -2591555 - AluSx SINE Alu -12 300 3 332 268 105 81 chr12 141691038 141691239 -2591250 + L1ME4a LINE L1 5714 5927 -194 2211 87 22 0 chr12 141691239 141691542 -2590947 - AluSg SINE Alu 0 309 1 332 268 105 81 chr12 141691542 141691634 -2590855 + L1ME4a LINE L1 5927 6015 -106 292 127 63 0 chr12 141691680 141691743 -2590746 - L1MC3 LINE L1 -3 7782 7716 1060 253 187 14 chr12 141691786 141692293 -2590196 - L1MD3 LINE L1 -31 7964 7370 206 259 0 17 chr12 141694072 141694130 -2588359 + MER5B DNA MER1_type 4 60 -118 278 240 68 75 chr12 141694133 141694255 -2588234 + L1MC/D LINE L1 5522 5653 -468 2204 224 11 32 chr12 141694506 141695029 -2587460 + MLT2B1 LTR ERVL 1 512 -8 270 159 0 0 chr12 141695141 141695185 -2587304 + MER75 DNA T2_type 1 44 -470 3396 126 4 25 chr12 141695208 141695596 -2586893 + MER75 DNA T2_type 1 377 -137 2003 139 13 0 chr12 141695596 141695898 -2586591 + AluSq SINE Alu 1 306 -7 3396 126 4 25 chr12 141695898 141696032 -2586457 + MER75 DNA T2_type 377 512 -2 226 333 30 22 chr12 141696243 141696378 -2586111 + MER5A DNA MER1_type 54 189 0 1026 229 27 27 chr12 141696597 141696855 -2585634 + MLT1H1 LTR MaLR 1 258 -297 415 319 89 12 chr12 141697013 141697125 -2585364 + MIR SINE MIR 35 166 -96 207 69 0 0 chr12 141697125 141697154 -2585335 + (TAA)n Simple_repeat Simple_repeat 1 29 0 415 319 89 12 chr12 141697154 141697210 -2585279 + MIR SINE MIR 166 216 -46 195 69 0 0 chr12 141697245 141697274 -2585215 + (A)n Simple_repeat Simple_repeat 1 29 0 509 273 88 19 chr12 141697622 141697827 -2584662 - MIR SINE MIR -24 238 20 216 0 0 0 chr12 141698717 141698741 -2583748 + (GA)n Simple_repeat Simple_repeat 1 24 0 2132 158 78 10 chr12 141698965 141699365 -2583124 + MSTC LTR MaLR 1 427 -1 2431 142 49 5 chr12 141699481 141699889 -2582600 - MSTB LTR MaLR 0 426 1 2190 82 0 11 chr12 141700264 141700543 -2581946 - AluY SINE Alu -34 277 2 489 282 121 11 chr12 141700683 141700857 -2581632 - MIR SINE MIR -14 248 56 1809 139 160 37 chr12 141700954 141701335 -2581154 + MSTA LTR MaLR 1 428 0 232 178 0 0 chr12 141701614 141701659 -2580830 + LTR67 LTR ERVL 513 557 0 480 300 85 15 chr12 141703248 141703448 -2579041 - MIR SINE MIR -32 230 17 1121 228 96 52 chr12 141703476 141703914 -2578575 - MLT1C LTR MaLR 0 467 11 1929 219 39 21 chr12 141704402 141704922 -2577567 + L1MB8 LINE L1 5649 6177 -1 3017 205 25 3 chr12 141704932 141705562 -2576927 + L1MB5 LINE L1 5523 6166 -8 1021 211 65 51 chr12 141705917 141706268 -2576221 + MLT1A2 LTR MaLR 19 374 0 258 266 102 70 chr12 141706279 141706318 -2576171 - LTR33 LTR ERVL -53 468 432 3053 64 71 14 chr12 141706318 141706738 -2575751 + MLT2A1 LTR ERVL 1 444 0 258 266 102 70 chr12 141706738 141707141 -2575348 - LTR33 LTR ERVL -89 432 12 2422 60 0 27 chr12 141707723 141708023 -2574466 - AluSg SINE Alu -18 292 1 281 259 24 12 chr12 141709248 141709333 -2573156 + MLT1G LTR MaLR 40 125 -465 951 161 138 6 chr12 141709333 141709507 -2572982 + AluJb SINE Alu 25 221 -91 1739 171 33 3 chr12 141709507 141709806 -2572683 + AluJo SINE Alu 2 309 -3 876 45 0 0 chr12 141709909 141710020 -2572469 + L1PA4 LINE L1 6045 6155 0 339 135 0 0 chr12 141710027 141710079 -2572410 + MLT1G LTR MaLR 227 278 -312 287 298 25 51 chr12 141710208 141710366 -2572123 + MLT1G LTR MaLR 402 555 0 2265 123 3 0 chr12 141710968 141711268 -2571221 - AluSx SINE Alu -11 301 1 314 121 0 17 chr12 141711278 141711336 -2571153 + (TCCCC)n Simple_repeat Simple_repeat 4 60 0 278 120 6 0 chr12 141711341 141711396 -2571093 - Alu SINE Alu 0 302 253 248 275 46 38 chr12 141711576 141711707 -2570782 - L1ME LINE L1 -264 5857 5726 369 282 39 19 chr12 141711723 141711879 -2570610 - L1ME LINE L1 -481 5640 5482 2234 111 0 7 chr12 141711911 141712209 -2570280 + AluSx SINE Alu 1 296 -16 250 275 0 25 chr12 141712262 141712342 -2570147 - L1ME LINE L1 -2398 5410 5333 567 325 146 38 chr12 141712560 141713472 -2569017 - L1ME LINE L1 -1079 5067 4022 279 267 33 56 chr12 141713760 141713850 -2568639 - MER5A DNA MER1_type -53 136 49 * 377 309 0 24 chr12 141713849 141713972 -2568517 + L3 LINE CR1 1256 1375 -202 480 223 9 36 chr12 141714120 141714232 -2568257 + MER5A DNA MER1_type 28 136 -53 493 309 92 26 chr12 141715143 141715701 -2566788 + L1MC4a LINE L1 5284 5636 -485 2186 123 7 0 chr12 141716269 141716571 -2565918 + AluSx SINE Alu 1 304 -8 288 183 110 0 chr12 141716848 141716930 -2565559 + L1ME4a LINE L1 5981 6071 -50 656 265 54 0 chr12 141717336 141717502 -2564987 - MER5A DNA MER1_type 0 189 15 337 189 22 22 chr12 141719062 141719242 -2563247 + (TG)n Simple_repeat Simple_repeat 1 180 0 289 279 96 15 chr12 141719468 141719604 -2562885 + Charlie8 DNA MER1_type 129 275 -2142 693 143 53 53 chr12 141720628 141720788 -2561701 - MER53 DNA DNA 0 189 26 2213 109 0 0 chr12 141720788 141721117 -2561372 - AluSx SINE Alu 0 329 1 693 143 53 53 chr12 141721117 141721144 -2561345 - MER53 DNA DNA -162 27 1 736 204 14 0 chr12 141721174 141721316 -2561173 + MIR SINE MIR 34 177 -85 207 359 46 14 chr12 141721425 141721642 -2560847 + L2 LINE L2 2815 3038 -234 * 228 204 23 0 chr12 141721640 141721684 -2560805 - L2 LINE L2 -3 3310 3266 962 276 76 0 chr12 141721685 141721975 -2560514 + MER58B DNA MER1_type 2 313 -28 451 249 139 48 chr12 141722150 141722423 -2560066 - L2 LINE L2 -831 2483 2186 861 286 14 0 chr12 141722519 141722739 -2559750 + MIR SINE MIR 15 237 -25 313 191 22 56 chr12 141722781 141722870 -2559619 + L2 LINE L2 3153 3238 -34 767 238 16 5 chr12 141723400 141723585 -2558904 - MER105 DNA DNA -12 192 6 1074 101 0 0 chr12 141723686 141723844 -2558645 + (AATAG)n Simple_repeat Simple_repeat 1 158 0 264 262 75 0 chr12 141724504 141724611 -2557878 - LTR67 LTR ERVL 0 557 443 351 250 62 75 chr12 141724792 141724952 -2557537 + MIR SINE MIR 52 209 -53 314 217 72 24 chr12 141725193 141725276 -2557213 - MER91A DNA MER1_type -109 87 1 461 194 52 37 chr12 141725893 141726027 -2556462 - MER119 DNA MER1_type 0 583 448 322 252 92 17 chr12 141726020 141726139 -2556350 - MER119 DNA MER1_type -450 133 6 * 215 297 0 0 chr12 141726252 141726326 -2556163 + MIR SINE MIR 154 227 -35 2601 62 0 0 chr12 141726599 141726906 -2555583 - AluY SINE Alu -4 307 1 315 237 69 84 chr12 141726956 141727087 -2555402 - MER5B DNA MER1_type 0 178 50 2308 116 0 0 chr12 141727100 141727410 -2555079 - AluSx SINE Alu -2 310 1 336 263 162 43 chr12 141727607 141727797 -2554692 - L1MC/D LINE L1 -686 5658 5444 258 81 0 0 chr12 141728149 141728186 -2554303 + (TG)n Simple_repeat Simple_repeat 2 38 0 332 220 8 85 chr12 141728204 141728322 -2554167 + L1MC4 LINE L1 7914 8022 -20 343 267 203 40 chr12 141729572 141729774 -2552715 - L2 LINE L2 -8 3264 3030 401 344 78 0 chr12 141729868 141730124 -2552365 - Charlie8 DNA MER1_type -2140 277 2 347 280 21 29 chr12 141730290 141730633 -2551856 + (TATG)n Simple_repeat Simple_repeat 1 339 0 256 341 12 0 chr12 141730633 141730715 -2551774 + (CATG)n Simple_repeat Simple_repeat 2 84 0 249 316 0 0 chr12 141730721 141730892 -2551597 + (TG)n Simple_repeat Simple_repeat 2 172 0 374 297 31 0 chr12 141730894 141731022 -2551467 + (TATG)n Simple_repeat Simple_repeat 2 133 0 310 332 0 3 chr12 141731023 141731328 -2551161 + (TG)n Simple_repeat Simple_repeat 1 303 0 227 310 183 9 chr12 141731961 141732174 -2550315 + MIR SINE MIR 13 262 0 199 299 82 21 chr12 141732155 141732252 -2550237 - MIR SINE MIR -59 203 101 * 761 248 43 4 chr12 141732578 141732812 -2549677 + MER63 DNA MER1_type 52 294 -636 763 242 53 5 chr12 141732962 141733183 -2549306 + MIR SINE MIR 33 261 -1 1895 232 10 2 chr12 141733215 141733628 -2548861 - L1MB5 LINE L1 -6 6168 5753 1134 219 23 0 chr12 141733647 141733912 -2548577 - L1MA4 LINE L1 -5 6295 6025 2033 174 16 38 chr12 141733912 141734256 -2548233 - L1MB5 LINE L1 -442 5732 5399 2823 87 3 11 chr12 141734256 141734634 -2547855 + THE1C LTR MaLR 1 375 0 2033 174 16 38 chr12 141734634 141734738 -2547751 - L1MB5 LINE L1 -775 5399 5294 462 292 117 71 chr12 141735675 141736201 -2546288 - L2 LINE L2 -5 3308 2763 1089 174 28 0 chr12 141736224 141736421 -2546068 - MER57A LTR ERV1 0 403 201 2723 89 5 0 chr12 141736421 141736803 -2545686 + MER41A LTR ERV1 1 384 -170 358 153 42 0 chr12 141736811 141736883 -2545606 - MER57A LTR ERV1 -195 208 134 2350 103 3 10 chr12 141737396 141737708 -2544781 - AluSg SINE Alu 0 310 1 354 250 0 0 chr12 141737936 141738016 -2544473 - Tigger7 DNA MER2_type -12 2575 2496 * 1923 226 40 25 chr12 141738015 141738492 -2543997 - Tigger7 DNA MER2_type -1965 522 39 737 278 72 48 chr12 141739696 141740156 -2542333 + MLT1K LTR MaLR 116 586 -2 183 266 139 13 chr12 141740258 141740337 -2542152 + L3 LINE CR1 358 446 -1131 254 356 191 8 chr12 141740401 141740637 -2541852 + L3 LINE CR1 569 847 -730 1237 160 49 4 chr12 141742998 141743242 -2539247 - MER50 LTR ERV1 -47 687 433 1181 131 25 47 chr12 141743233 141743469 -2539020 - MER50 LTR ERV1 -501 233 3 * 248 233 0 70 chr12 141743715 141743801 -2538688 + LTR33A LTR ERVL 421 500 -23 760 211 158 5 chr12 141743841 141744031 -2538458 - MER58A DNA MER1_type 0 224 6 1520 171 57 87 chr12 141745378 141745817 -2536672 - LTR37A LTR ERV1 0 426 1 677 228 49 62 chr12 141746367 141746716 -2535773 - L1ME2 LINE L1 -5 6161 5832 258 271 129 0 chr12 141747593 141747678 -2534811 + L1M4 LINE L1 4561 4656 -1490 1529 139 0 33 chr12 141747678 141747922 -2534567 + AluJb SINE Alu 64 299 -13 2167 107 16 0 chr12 141748687 141748995 -2533494 - AluSq SINE Alu 0 313 1 1592 173 7 10 chr12 141748998 141749293 -2533196 - AluJo SINE Alu -18 294 1 261 234 31 0 chr12 141750367 141750431 -2532058 + CT-rich Low_complexity Low_complexity 3 68 0 216 0 0 0 chr12 141750517 141750541 -2531948 + (TG)n Simple_repeat Simple_repeat 2 25 0 5335 119 111 124 chr12 141750671 141752215 -2530274 - pTR5 LTR ERV1 0 2438 743 1006 138 23 29 chr12 141752221 141752395 -2530094 - MER20 DNA MER1_type -1 218 46 1403 183 4 19 chr12 141752551 141752819 -2529670 + AluJo SINE Alu 23 286 -26 1661 145 6 63 chr12 141753099 141753292 -2529197 - AluJo SINE Alu -12 300 130 1782 144 10 7 chr12 141753292 141753591 -2528898 + AluSx SINE Alu 1 300 -12 1661 145 6 63 chr12 141753591 141753714 -2528775 - AluJo SINE Alu -182 130 2 2200 85 0 0 chr12 141754278 141754571 -2527918 - AluSg SINE Alu 0 310 18 229 324 68 0 chr12 141754656 141754730 -2527759 + MLT1K LTR MaLR 4 82 -506 919 257 72 0 chr12 141755351 141755573 -2526916 + MIR SINE MIR 25 262 0 229 378 74 7 chr12 141755959 141756107 -2526382 - MIR SINE MIR -46 216 59 1074 251 114 60 chr12 141756136 141756619 -2525870 + Charlie8 DNA MER1_type 2 510 -1907 1831 122 44 0 chr12 141757253 141757549 -2524940 + AluSx SINE Alu 1 309 -3 804 283 90 0 chr12 141758037 141758249 -2524240 + MIR SINE MIR 10 240 -22 262 340 28 0 chr12 141758377 141758483 -2524006 + Charlie8 DNA MER1_type 1 109 -2308 2214 107 0 3 chr12 141758525 141758835 -2523654 + AluSg SINE Alu 1 309 -1 504 127 0 0 chr12 141758855 141758926 -2523563 + AluJ/FLAM SINE Alu 14 84 -228 593 254 14 0 chr12 141759055 141759197 -2523292 + Charlie5 DNA MER1_type 2481 2624 0 491 141 0 0 chr12 141759701 141759772 -2522717 - AluJ/FLAM SINE Alu -228 84 14 225 0 0 0 chr12 141759944 141759969 -2522520 + (CATCG)n Simple_repeat Simple_repeat 5 29 0 768 222 53 0 chr12 141760456 141760627 -2521862 + MLT2C2 LTR ERVL 4 183 -281 501 183 20 17 chr12 141760847 141760977 -2521512 + MLT2C2 LTR ERVL 216 346 -51 429 193 30 12 chr12 141761017 141761183 -2521306 + (TCTA)n Simple_repeat Simple_repeat 2 170 0 467 160 5 27 chr12 141761253 141761476 -2521013 + (CA)n Simple_repeat Simple_repeat 1 217 0 310 74 0 111 chr12 141761476 141761530 -2520959 + MLT2C1 LTR ERVL 350 397 0 1600 171 55 19 chr12 141762158 141762520 -2519969 + THE1C LTR MaLR 1 375 0 2191 81 13 0 chr12 141762943 141763241 -2519248 + AluSx SINE Alu 1 302 -10 232 274 105 24 chr12 141764317 141764441 -2518048 - MLT1K LTR MaLR -401 187 54 623 239 15 11 chr12 141766318 141766483 -2516006 + MLT1A1 LTR MaLR 2 149 -216 256 221 35 110 chr12 141766691 141766836 -2515653 - MLT1K LTR MaLR -126 462 329 413 292 73 23 chr12 141767944 141768163 -2514326 + MLT1K LTR MaLR 347 576 -12 450 268 9 18 chr12 141768796 141768908 -2513581 - MIR SINE MIR -46 216 106 637 266 37 0 chr12 141769188 141769685 -2512804 + MLT1K LTR MaLR 84 247 -341 444 286 123 70 chr12 141769696 141770038 -2512451 + MLT1K LTR MaLR 139 498 -90 214 269 174 34 chr12 141770126 141770275 -2512214 - MIR SINE MIR -1 261 92 293 241 92 51 chr12 141771029 141771224 -2511265 - LTR33 LTR ERVL -21 500 298 872 246 130 38 chr12 141771834 141772257 -2510232 + MLT1L LTR MaLR 145 606 -9 3005 111 2 0 chr12 141772688 141773112 -2509377 - L1PA11 LINE L1 0 6174 5750 247 361 65 19 chr12 141774241 141774349 -2508140 + MER5A DNA MER1_type 59 171 -18 437 167 26 2 chr12 141774481 141774573 -2507916 + MLT1J2 LTR MaLR 93 173 -277 2530 49 0 0 chr12 141774625 141774933 -2507556 + AluY SINE Alu 1 308 -3 2174 110 0 3 chr12 141774972 141775282 -2507207 + AluSx SINE Alu 1 309 -3 228 308 13 0 chr12 141775451 141775529 -2506960 + LTR37A LTR ERV1 122 200 -226 359 290 80 49 chr12 141775602 141775764 -2506725 + MLT1J2 LTR MaLR 276 442 -8 379 286 97 22 chr12 141776048 141776233 -2506256 + MIR SINE MIR 29 227 -35 227 256 128 13 chr12 141776363 141776441 -2506048 - L2 LINE L2 0 3313 3227 490 313 192 16 chr12 141776833 141777197 -2505292 - LTR16A LTR ERVL -7 443 16 * 579 279 32 18 chr12 141777196 141777415 -2505074 - MLT1J LTR MaLR -286 225 4 188 250 60 70 chr12 141777426 141777526 -2504963 - L2 LINE L2 -266 3006 2908 344 246 33 33 chr12 141778127 141778249 -2504240 - L1M4 LINE L1 -831 5315 5194 403 338 90 0 chr12 141778697 141778872 -2503617 - Charlie8 DNA MER1_type -65 276 75 198 0 0 0 chr12 141778872 141778894 -2503595 + (CAA)n Simple_repeat Simple_repeat 2 23 0 403 338 90 0 chr12 141778894 141778940 -2503549 - Charlie8 DNA MER1_type -266 75 35 846 189 0 0 chr12 141779053 141779335 -2503154 + (ATG)n Simple_repeat Simple_repeat 1 282 0 451 300 154 10 chr12 141780412 141780705 -2501784 - MER113 DNA MER1_type? -84 437 103 289 279 94 75 chr12 141780785 141780986 -2501503 + MLT2E LTR ERVL 3 207 -421 729 250 57 22 chr12 141781836 141782064 -2500425 + MLT1I LTR MaLR 174 409 0 242 196 109 54 chr12 141782095 141782187 -2500302 + MER112 DNA MER1_type 132 228 -32 398 331 8 8 chr12 141783545 141783669 -2498820 - L2 LINE L2 0 3313 3190 3032 156 24 7 chr12 141783677 141784412 -2498077 + L1M2 LINE L1 5058 5807 -493 798 50 0 0 chr12 141784394 141784494 -2497995 - L1PA13 LINE L1 -349 5814 5715 * 2468 66 3 0 chr12 141784494 141784805 -2497684 + L1PA13 LINE L1 5827 6144 -19 1539 74 23 14 chr12 141784810 141785027 -2497462 + L1MA6 LINE L1 5773 5991 -309 422 362 20 12 chr12 141785035 141785281 -2497208 - L2 LINE L2 -112 3201 2954 937 151 50 6 chr12 141785307 141785466 -2497023 - MER20 DNA MER1_type -53 166 1 491 325 67 10 chr12 141785466 141785675 -2496814 - L2 LINE L2 -353 2961 2741 235 320 148 0 chr12 141785702 141785830 -2496659 + LTR33 LTR ERVL 2 148 -373 316 299 58 36 chr12 141785844 141785981 -2496508 + LTR33 LTR ERVL 292 431 -90 23 54 0 0 chr12 141787160 141787197 -2495292 + AT_rich Low_complexity Low_complexity 1 37 0 6349 225 79 35 chr12 141787335 141789516 -2492973 + L1MDa LINE L1 17 2649 -3891 1021 184 44 10 chr12 141789516 141789722 -2492767 + L1PB3 LINE L1 5941 6153 -1 6349 225 79 35 chr12 141789722 141790915 -2491574 + L1MDa LINE L1 2649 3789 -2751 3287 24 3 0 chr12 141791022 141791401 -2491088 - L1PA5 LINE L1 -4 6150 5771 909 10 0 0 chr12 141791401 141791502 -2490987 + L1PA5 LINE L1 5672 5772 -383 182 244 0 0 chr12 141791504 141791545 -2490944 - MIR SINE MIR -147 115 75 352 262 29 19 chr12 141791944 141792047 -2490442 + MLT1K LTR MaLR 447 550 -38 242 308 14 41 chr12 141792391 141792537 -2489952 - LTR33 LTR ERVL -343 178 37 1978 145 6 0 chr12 141793532 141793843 -2488646 - AluSq SINE Alu 0 313 1 776 274 89 25 chr12 141794035 141794349 -2488140 - MLT1K LTR MaLR -2 586 253 1080 271 52 14 chr12 141795601 141795641 -2486848 - L1MB7 LINE L1 -19 6165 6128 1618 143 13 53 chr12 141795641 141795942 -2486547 - AluJo SINE Alu -23 289 1 1080 271 52 14 chr12 141795942 141796248 -2486241 - L1MB7 LINE L1 -56 6128 5806 302 247 16 0 chr12 141796247 141796344 -2486145 - L1MB7 LINE L1 -601 5567 5471 * 22 0 0 0 chr12 141796359 141796381 -2486108 + AT_rich Low_complexity Low_complexity 1 22 0 1242 104 0 0 chr12 141796734 141797015 -2485474 + (TCTCTG)n Simple_repeat Simple_repeat 1 281 0 21 36 0 0 chr12 141797984 141798012 -2484477 + AT_rich Low_complexity Low_complexity 1 28 0 282 290 20 10 chr12 141798666 141798766 -2483723 + L1ME4a LINE L1 4919 5019 -1127 308 343 119 25 chr12 141798822 141799058 -2483431 + L1ME4a LINE L1 5088 5345 -801 750 202 131 11 chr12 141799206 141799389 -2483100 - MER20 DNA MER1_type -13 206 2 398 268 44 5 chr12 141799398 141799534 -2482955 + L1ME4a LINE L1 5506 5659 -462 1871 263 88 9 chr12 141799827 141800351 -2482138 - MLT1F1 LTR MaLR -2 565 1 291 239 33 11 chr12 141800351 141800443 -2482046 + L1ME4a LINE L1 6028 6121 0 207 167 74 0 chr12 141800747 141800801 -2481688 + L2 LINE L2 2301 2358 -956 190 333 110 35 chr12 141801258 141801513 -2480976 - L2 LINE L2 0 3272 2999 529 284 88 64 chr12 141803056 141803478 -2479011 - MLT1K LTR MaLR -30 558 127 250 277 77 46 chr12 141804007 141804137 -2478352 + MIR SINE MIR 16 149 -59 558 257 70 0 chr12 141804457 141804644 -2477845 - MLT1G LTR MaLR -40 550 351 369 0 0 0 chr12 141805151 141805192 -2477297 + (TG)n Simple_repeat Simple_repeat 2 42 0 259 257 57 80 chr12 141805553 141805653 -2476836 - MIR SINE MIR -18 244 148 2477 57 0 3 chr12 141805653 141805953 -2476536 - AluY SINE Alu -12 299 1 259 257 57 80 chr12 141805953 141806027 -2476462 - MIR SINE MIR -114 148 74 1991 114 0 0 chr12 141806092 141806355 -2476134 + AluSx SINE Alu 41 303 -9 208 259 19 0 chr12 141806440 141806494 -2475995 + MIR SINE MIR 94 148 -60 426 281 137 42 chr12 141806704 141806931 -2475558 - L2 LINE L2 -47 3266 3062 2245 128 0 0 chr12 141806931 141807229 -2475260 + AluSx SINE Alu 1 298 -14 426 281 137 42 chr12 141807229 141807572 -2474917 - L2 LINE L2 -251 3062 2593 226 176 47 118 chr12 141807583 141807644 -2474845 - MLT1K LTR MaLR -15 573 518 2070 116 39 3 chr12 141807644 141807928 -2474561 + AluSx SINE Alu 1 294 -18 226 176 47 118 chr12 141807928 141807951 -2474538 - MLT1K LTR MaLR -70 518 495 1598 170 42 3 chr12 141808720 141808885 -2473604 - AluJo SINE Alu -16 296 114 240 35 0 0 chr12 141808885 141808914 -2473575 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1598 170 42 3 chr12 141808914 141809031 -2473458 - AluJo SINE Alu -198 114 3 787 194 0 0 chr12 141809045 141809174 -2473315 - FLAM_C SINE Alu -3 130 2 213 264 23 58 chr12 141809268 141809355 -2473134 + MIR3 SINE MIR 125 208 0 511 136 0 19 chr12 141809451 141809554 -2472935 + (TCCC)n Simple_repeat Simple_repeat 4 104 0 242 159 23 0 chr12 141809557 141809601 -2472888 + CT-rich Low_complexity Low_complexity 3 47 0 1164 196 111 19 chr12 141809668 141809995 -2472494 + MLT1A1 LTR MaLR 1 365 0 2441 82 0 19 chr12 141810978 141811293 -2471196 + AluSx SINE Alu 1 309 -3 205 233 116 41 chr12 141812914 141813060 -2469429 + L2 LINE L2 2797 2953 -361 344 308 161 55 chr12 141813784 141814132 -2468357 - MLT1J2 LTR MaLR -29 421 33 270 265 204 20 chr12 141814794 141814941 -2467548 - MLT1J2 LTR MaLR -257 193 20 432 256 103 26 chr12 141815394 141815589 -2466900 + MER113 DNA MER1_type? 192 401 -120 508 236 73 11 chr12 141816628 141816806 -2465683 + MER5A DNA MER1_type 1 189 0 34 55 0 0 chr12 141818126 141818181 -2464308 + GC_rich Low_complexity Low_complexity 1 55 0 24 124 0 0 chr12 141818214 141818392 -2464097 + GC_rich Low_complexity Low_complexity 1 178 0 186 209 0 0 chr12 141818976 141819019 -2463470 + (TG)n Simple_repeat Simple_repeat 1 43 0 195 100 0 0 chr12 141820940 141820970 -2461519 + (CA)n Simple_repeat Simple_repeat 2 31 0 1198 110 8 2 chr12 141822593 141823015 -2459474 + (TCCA)n Simple_repeat Simple_repeat 1 604 0 219 350 8 60 chr12 141823290 141823407 -2459082 - L2 LINE L2 -24 3248 3138 298 194 137 79 chr12 141823576 141823715 -2458774 - MLT1D LTR MaLR -356 149 1 304 320 140 22 chr12 141823977 141824205 -2458284 - MIR SINE MIR 0 262 8 1632 185 44 10 chr12 141825843 141825966 -2456523 + AluJb SINE Alu 1 118 -194 186 71 0 0 chr12 141825966 141825994 -2456495 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1632 185 44 10 chr12 141825994 141826167 -2456322 + AluJb SINE Alu 118 307 -5 201 216 20 0 chr12 141827025 141827076 -2455413 + L3 LINE CR1 603 654 -923 187 250 56 28 chr12 141827296 141827368 -2455121 + L3 LINE CR1 895 968 -609 2168 145 29 0 chr12 141827727 141828072 -2454417 + THE1B LTR MaLR 10 364 0 454 276 59 0 chr12 141828780 141828932 -2453557 - MIR SINE MIR -12 250 90 2137 115 0 0 chr12 141828952 141829230 -2453259 + AluSg SINE Alu 1 278 -32 207 0 0 0 chr12 141829230 141829253 -2453236 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 255 293 0 0 chr12 141829582 141829640 -2452849 + polypurine Low_complexity Low_complexity 3 60 0 272 239 68 11 chr12 141830152 141830240 -2452249 - L1ME4a LINE L1 -68 6053 5961 296 275 161 28 chr12 141830396 141830607 -2451882 - L1ME4a LINE L1 -366 5755 5517 240 293 136 14 chr12 141831287 141831427 -2451062 - L2 LINE L2 0 3272 3116 299 284 11 0 chr12 141832604 141832692 -2449797 - MLT1I LTR MaLR -3 406 318 369 290 65 26 chr12 141832699 141832854 -2449635 - MLT1J2 LTR MaLR -223 227 67 841 279 92 61 chr12 141832889 141833397 -2449092 - MLT1K LTR MaLR -63 525 2 2051 129 0 20 chr12 141833414 141833709 -2448780 - AluSx SINE Alu -21 291 3 34 0 0 0 chr12 141834506 141834540 -2447949 + AT_rich Low_complexity Low_complexity 1 34 0 316 289 119 54 chr12 141834716 141835059 -2447430 + Charlie8 DNA MER1_type 37 406 -112 2747 73 24 11 chr12 141835059 141835429 -2447060 - THE1C LTR MaLR 0 375 1 316 289 119 54 chr12 141835429 141835447 -2447042 + Charlie8 DNA MER1_type 406 421 -97 370 312 58 51 chr12 141835601 141835877 -2446612 + Charlie2 DNA MER1_type 34 311 -2471 2189 185 48 40 chr12 141835907 141836533 -2445956 + Charlie2 DNA MER1_type 2232 2862 0 660 277 0 23 chr12 141836543 141836720 -2445769 + MER5B DNA MER1_type 2 174 -4 194 273 0 0 chr12 141836772 141836816 -2445673 + MER5B DNA MER1_type 1 44 -134 3555 236 23 28 chr12 141836843 141837976 -2444513 - L1ME1 LINE L1 -8 6953 5820 1180 188 0 0 chr12 141837985 141838177 -2444312 + AluJo SINE Alu 91 282 -30 6137 263 63 39 chr12 141838178 141839385 -2443104 - L1ME1 LINE L1 -1110 5831 4654 1356 114 40 4 chr12 141839385 141839612 -2442877 - L1MA5A LINE L1 -5 6292 6058 6137 263 63 39 chr12 141839612 141842431 -2440058 - L1ME1 LINE L1 -2287 4654 1764 408 282 64 10 chr12 141842565 141842767 -2439722 - L1ME1 LINE L1 -6179 244 32 317 234 52 2 chr12 141842806 141842904 -2439585 - MER5B DNA MER1_type -75 103 12 702 270 54 5 chr12 141842998 141843220 -2439269 - LTR33A LTR ERVL 0 523 291 2149 101 31 0 chr12 141843258 141843546 -2438943 + AluSx SINE Alu 1 297 -15 374 321 61 6 chr12 141843585 141843747 -2438742 - LTR33 LTR ERVL -314 207 37 267 307 128 22 chr12 141843747 141843926 -2438563 - MER110 LTR ERV1 0 491 294 269 219 156 94 chr12 141844033 141844193 -2438296 - MER110A LTR ERV1 -298 170 1 234 0 0 0 chr12 141844471 141844497 -2437992 + (TC)n Simple_repeat Simple_repeat 2 27 0 214 227 11 23 chr12 141844897 141844985 -2437504 + (TAA)n Simple_repeat Simple_repeat 2 88 0 1162 280 111 35 chr12 141845109 141845630 -2436859 + MLT1K LTR MaLR 25 585 -3 356 267 63 47 chr12 141846197 141846388 -2436101 + Charlie8 DNA MER1_type 1 194 -2223 1715 236 50 80 chr12 141846982 141847521 -2434968 + MLT1G1 LTR MaLR 73 595 0 245 314 23 0 chr12 141849602 141849688 -2432801 - MIR SINE MIR 0 262 175 320 306 50 56 chr12 141849854 141850014 -2432475 - MIR SINE MIR 0 262 104 233 214 238 0 chr12 141850474 141850558 -2431931 + MLT1G LTR MaLR 5 108 -487 2276 217 23 25 chr12 141850561 141850889 -2431600 + MER74A LTR ERVL 3 331 -227 2771 110 0 0 chr12 141850889 141851253 -2431236 - THE1B LTR MaLR 0 364 1 2276 217 23 25 chr12 141851253 141851454 -2431035 + MER74A LTR ERVL 331 531 -27 330 332 65 33 chr12 141851483 141851729 -2430760 + MLT1G LTR MaLR 62 314 -241 1855 258 35 47 chr12 141852274 141852801 -2429688 + L1MB7 LINE L1 5574 6095 -89 1654 98 4 16 chr12 141852801 141853045 -2429444 + AluSq SINE Alu 73 313 0 1855 258 35 47 chr12 141853045 141853114 -2429375 + L1MB7 LINE L1 6095 6163 -21 484 312 48 0 chr12 141853135 141853324 -2429165 + MIR SINE MIR 31 228 -34 224 310 88 0 chr12 141853674 141853787 -2428702 + L2 LINE L2 3146 3268 -4 2164 122 0 0 chr12 141854383 141854695 -2427794 + AluSx SINE Alu 1 312 0 225 0 0 0 chr12 141855441 141855466 -2427023 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1563 193 169 31 chr12 141855900 141856259 -2426230 + MLT1D LTR MaLR 21 448 -57 1704 144 0 56 chr12 141856259 141856578 -2425911 - AluJb SINE Alu -11 301 1 1563 193 169 31 chr12 141856578 141856638 -2425851 + MLT1D LTR MaLR 448 498 -7 234 297 117 28 chr12 141857483 141857628 -2424861 + MIR SINE MIR 93 250 -12 215 330 0 0 chr12 141858177 141858274 -2424215 + (CA)n Simple_repeat Simple_repeat 2 98 0 227 182 0 45 chr12 141858289 141858377 -2424112 + (CA)n Simple_repeat Simple_repeat 2 85 0 1592 245 32 16 chr12 141859171 141859603 -2422886 + L1MB5 LINE L1 5730 6168 -6 243 378 0 0 chr12 141860277 141860367 -2422122 + MIR SINE MIR 102 191 -71 1691 189 57 14 chr12 141860852 141861201 -2421288 - MLT1A1 LTR MaLR -1 364 1 616 274 15 34 chr12 141861375 141861579 -2420910 - MIR SINE MIR -1 261 62 243 146 0 0 chr12 141861913 141861954 -2420535 + (GAA)n Simple_repeat Simple_repeat 2 42 0 1539 99 50 14 chr12 141861964 141862186 -2420303 + MER30 DNA MER1_type 1 230 0 243 0 0 0 chr12 141862206 141862233 -2420256 + (TG)n Simple_repeat Simple_repeat 2 28 0 1306 253 91 2 chr12 141862307 141862703 -2419786 - MLT1H1 LTR MaLR -2 553 123 428 332 123 25 chr12 141863241 141863406 -2419083 - L2 LINE L2 -22 3291 3144 1475 176 28 47 chr12 141863406 141863487 -2419002 + AluJb SINE Alu 1 82 -230 2236 96 7 0 chr12 141863487 141863789 -2418700 + AluSg SINE Alu 1 304 -6 1475 176 28 47 chr12 141863789 141864025 -2418464 + AluJb SINE Alu 82 312 0 428 332 123 25 chr12 141864025 141864299 -2418190 - L2 LINE L2 -169 3144 2809 1729 198 65 59 chr12 141865058 141865547 -2416942 + MLT1D LTR MaLR 2 493 -12 964 287 116 29 chr12 141865660 141866081 -2416408 - MLT1K LTR MaLR -9 579 122 374 308 26 0 chr12 141867179 141867296 -2415193 + L2 LINE L2 3187 3306 -7 1196 268 61 70 chr12 141867297 141867857 -2414632 - MLT1G1 LTR MaLR -13 582 28 1657 150 3 37 chr12 141868091 141868423 -2414066 + AluJb SINE Alu 1 322 0 509 221 124 0 chr12 141868430 141868575 -2413914 + L1MD1 LINE L1 6080 6242 0 435 325 89 6 chr12 141868578 141868690 -2413799 + MIR SINE MIR 34 166 -96 207 69 0 0 chr12 141868690 141868719 -2413770 + (TAA)n Simple_repeat Simple_repeat 1 29 0 435 325 89 6 chr12 141868719 141868775 -2413714 + MIR SINE MIR 166 216 -46 488 273 88 19 chr12 141869192 141869397 -2413092 - MIR SINE MIR -24 238 20 227 259 212 0 chr12 141869744 141869829 -2412660 + MIR SINE MIR 110 212 -50 456 292 59 51 chr12 141870045 141870519 -2411970 + LTR33A LTR ERVL 2 517 -6 1753 196 123 18 chr12 141871106 141871554 -2410935 + MLT1D LTR MaLR 2 496 -9 353 301 127 12 chr12 141871570 141871743 -2410746 - MIR SINE MIR 0 262 70 563 296 53 19 chr12 141871760 141871966 -2410523 - MIR SINE MIR -34 228 16 817 242 65 112 chr12 141872098 141872527 -2409962 + MLT1C LTR MaLR 10 418 -49 276 57 19 38 chr12 141873116 141873169 -2409320 + (TG)n Simple_repeat Simple_repeat 2 53 0 226 270 0 56 chr12 141873188 141873277 -2409212 + (TATG)n Simple_repeat Simple_repeat 2 85 0 237 265 11 22 chr12 141873282 141873463 -2409026 + (TG)n Simple_repeat Simple_repeat 2 180 0 297 241 6 30 chr12 141873501 141873667 -2408822 + (TG)n Simple_repeat Simple_repeat 1 162 0 442 272 7 10 chr12 141873689 141873981 -2408508 + (TG)n Simple_repeat Simple_repeat 1 291 0 482 245 20 0 chr12 141874054 141874156 -2408333 - MLT1D LTR MaLR -401 104 1 378 308 38 74 chr12 141874248 141874593 -2407896 + Charlie8 DNA MER1_type 38 274 -2143 1621 230 100 16 chr12 141874811 141875242 -2407247 + MLT1C LTR MaLR 1 467 0 2023 130 0 13 chr12 141876257 141876565 -2405924 - AluJb SINE Alu -8 304 1 866 283 89 0 chr12 141877266 141877535 -2404954 - MLT2C1 LTR ERVL -47 350 58 598 282 92 34 chr12 141878956 141879336 -2403153 + L1ME4a LINE L1 5718 6119 -2 374 264 61 40 chr12 141879567 141879715 -2402774 + MIR SINE MIR 61 211 -51 268 284 29 10 chr12 141881747 141881849 -2400640 - Charlie8 DNA MER1_type -2258 159 56 1876 123 38 3 chr12 141881894 141882186 -2400303 + AluSx SINE Alu 1 302 -10 641 211 23 23 chr12 141882206 141882291 -2400198 - Charlie5 DNA MER1_type 0 2624 2540 2453 64 0 3 chr12 141882291 141882603 -2399886 + AluY SINE Alu 1 311 0 641 211 23 23 chr12 141882603 141882692 -2399797 - Charlie5 DNA MER1_type -83 2541 2450 234 302 52 26 chr12 141883495 141883611 -2398878 + L2 LINE L2 2932 3050 -222 678 287 0 0 chr12 141883845 141884012 -2398477 - MIR SINE MIR -55 207 41 285 333 73 34 chr12 141884162 141884396 -2398093 + L2 LINE L2 2975 3217 -96 1012 174 6 0 chr12 141884400 141884572 -2397917 + AluSg/x SINE Alu 136 308 -4 259 292 14 0 chr12 141884603 141884675 -2397814 + L2 LINE L2 3200 3272 0 878 228 79 0 chr12 141884908 141885110 -2397379 - MER58A DNA MER1_type -5 219 2 1877 131 3 30 chr12 141885734 141886039 -2396450 - AluSq SINE Alu -16 297 1 1021 281 16 57 chr12 141886982 141887406 -2395083 + MLT1L LTR MaLR 207 613 -2 409 287 0 0 chr12 141887819 141887913 -2394576 + MLT1K LTR MaLR 164 257 -331 432 272 145 22 chr12 141888376 141888604 -2393885 + MLT1K LTR MaLR 156 411 -177 283 194 45 15 chr12 141888677 141888744 -2393745 + MLT1K LTR MaLR 520 588 0 207 286 48 0 chr12 141888855 141888918 -2393571 - MIR SINE MIR -56 152 87 214 130 4 0 chr12 141888936 141888969 -2393520 - MER91A DNA MER1_type -25 171 91 446 295 26 26 chr12 141889017 141889173 -2393316 - MER91A DNA MER1_type -25 171 16 1223 221 102 25 chr12 141889255 141889608 -2392881 - MLT2C1 LTR ERVL -3 394 15 229 272 62 12 chr12 141889690 141889771 -2392718 - MER94 DNA DNA -22 112 28 2232 106 6 0 chr12 141889772 141890094 -2392395 + L1PA11 LINE L1 5564 5887 -287 225 339 194 0 chr12 141890860 141891025 -2391464 + MIR SINE MIR 31 227 -35 949 236 166 40 chr12 141891046 141891444 -2391045 - MLT1D LTR MaLR -35 470 23 1945 113 19 47 chr12 141891781 141892099 -2390390 + AluSc SINE Alu 1 309 0 914 345 25 29 chr12 141892193 141892923 -2389566 + L2 LINE L2 2540 3264 -49 243 229 0 0 chr12 141893282 141893343 -2389146 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 333 242 32 25 chr12 141893348 141893486 -2389003 + L1MC4 LINE L1 6612 6709 -1333 332 162 15 44 chr12 141893461 141893529 -2388960 - L1MC4 LINE L1 -1339 6703 6638 * 556 219 39 32 chr12 141894221 141894376 -2388113 - MIR SINE MIR -28 234 79 311 361 24 0 chr12 141894706 141894872 -2387617 + MIR SINE MIR 62 231 -31 591 302 36 27 chr12 141895044 141895269 -2387220 - MIR SINE MIR 0 262 36 333 358 0 0 chr12 141895975 141896070 -2386419 - L1MC4 LINE L1 -1333 6709 6615 329 348 0 0 chr12 141896081 141896170 -2386319 - L1MC4 LINE L1 -1339 6703 6615 341 253 19 13 chr12 141896180 141896288 -2386201 - L1MCa LINE L1 -1339 6983 1996 21 0 0 0 chr12 141898145 141898166 -2384323 + AT_rich Low_complexity Low_complexity 1 21 0 35 24 0 0 chr12 141900601 141900643 -2381846 + GC_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr12 141900694 141900720 -2381769 + GC_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 141901794 141901816 -2380673 + GC_rich Low_complexity Low_complexity 1 22 0 183 156 0 0 chr12 141903052 141903084 -2379405 + T-rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr12 141903999 141904021 -2378468 + AT_rich Low_complexity Low_complexity 1 22 0 372 94 0 0 chr12 141905676 141905729 -2376760 + (TC)n Simple_repeat Simple_repeat 2 54 0 496 144 5 87 chr12 141905823 141906018 -2376471 + GA-rich Low_complexity Low_complexity 1 179 0 353 111 32 0 chr12 141906091 141906154 -2376335 + GA-rich Low_complexity Low_complexity 1 65 0 460 268 85 0 chr12 141906829 141906982 -2375507 - MIR SINE MIR -65 197 32 195 42 0 0 chr12 141907012 141907036 -2375453 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 670 250 55 20 chr12 141907042 141907242 -2375247 - MIR SINE MIR -48 214 8 200 305 122 42 chr12 141907425 141907638 -2374851 - L2 LINE L2 -733 2581 2352 494 270 16 0 chr12 141908332 141908458 -2374031 + MIR SINE MIR 48 175 -87 357 317 19 10 chr12 141908466 141908570 -2373919 - MIR SINE MIR -3 259 155 259 325 12 0 chr12 141908559 141908639 -2373850 + MIR SINE MIR 168 248 -14 * 344 303 69 23 chr12 141910500 141910675 -2371814 + MLT1L LTR MaLR 251 433 -182 216 233 83 33 chr12 141911216 141911276 -2371213 + MIR SINE MIR 119 181 -81 775 279 28 64 chr12 141912350 141912740 -2369749 - MLT1J LTR MaLR -50 461 86 1694 219 62 88 chr12 141912946 141913798 -2368691 + L1MC5 LINE L1 7088 7917 -44 1426 214 7 0 chr12 141913799 141914108 -2368381 + AluJb SINE Alu 1 311 0 2002 66 0 0 chr12 141914134 141914378 -2368111 - L1PA8 LINE L1 -498 5674 5431 1664 71 0 0 chr12 141914378 141914590 -2367899 + L1PA8 LINE L1 5685 5896 -276 448 319 69 22 chr12 141914796 141915116 -2367373 + L2 LINE L2 1982 2316 -998 416 221 37 44 chr12 141915213 141915349 -2367140 + L2 LINE L2 2566 2700 -614 2082 123 0 3 chr12 141915883 141916183 -2366306 + AluSx SINE Alu 1 299 -13 255 290 181 23 chr12 141916184 141916482 -2366007 + L2 LINE L2 2739 3079 -234 328 243 142 47 chr12 141916767 141916915 -2365574 - L2 LINE L2 -6 3307 3146 204 67 0 0 chr12 141916947 141916977 -2365512 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 293 303 71 60 chr12 141918098 141918385 -2364104 - L2 LINE L2 -226 3087 2797 251 340 70 12 chr12 141918953 141919197 -2363292 + L2 LINE L2 1421 1678 -1636 954 181 11 16 chr12 141919443 141919631 -2362858 - L1MA4A LINE L1 -6 6297 6111 4590 53 14 0 chr12 141919631 141920195 -2362294 + L1PA5 LINE L1 5581 6154 0 712 266 117 21 chr12 141920789 141921269 -2361220 - L2 LINE L2 -299 3014 2490 376 290 198 12 chr12 141922059 141922221 -2360268 - MIR3 SINE MIR -12 196 5 295 271 6 6 chr12 141922486 141922656 -2359833 + (TATG)n Simple_repeat Simple_repeat 1 170 0 2002 98 7 19 chr12 141922698 141923005 -2359484 - AluSx SINE Alu -9 303 1 2539 161 40 2 chr12 141923683 141924162 -2358327 - L1MC1 LINE L1 -1 6332 5836 1827 195 34 5 chr12 141925089 141925468 -2357021 - MLT1B LTR MaLR 0 390 1 594 276 3 0 chr12 141926660 141926956 -2355533 + (TG)n Simple_repeat Simple_repeat 1 297 0 417 241 0 0 chr12 141926984 141927154 -2355335 + (TG)n Simple_repeat Simple_repeat 1 170 0 312 271 5 0 chr12 141927177 141927403 -2355086 + (TG)n Simple_repeat Simple_repeat 1 227 0 2447 167 12 5 chr12 141931052 141931460 -2351029 - LOR1b LTR ERV1 0 461 51 216 226 226 24 chr12 141931486 141931654 -2350835 + L2 LINE L2 1790 1991 -1323 2106 148 13 42 chr12 141932352 141932736 -2349753 - THE1C LTR MaLR 0 375 3 783 346 119 32 chr12 141933102 141933691 -2348798 + HAL1b LINE L1 6 645 -703 1119 233 79 110 chr12 141934103 141934359 -2348130 + L1MC5 LINE L1 6560 6822 -1139 234 0 0 0 chr12 141934359 141934385 -2348104 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 1119 233 79 110 chr12 141934385 141934535 -2347954 + L1MC5 LINE L1 6822 6975 -986 2175 149 29 66 chr12 141934535 141934735 -2347754 + MSTB LTR MaLR 1 207 -219 1552 188 24 3 chr12 141934735 141935027 -2347462 + AluJo SINE Alu 1 298 -14 2175 149 29 66 chr12 141935027 141935268 -2347221 + MSTB LTR MaLR 207 426 0 1119 233 79 110 chr12 141935268 141935875 -2346614 + L1MC5 LINE L1 6975 7526 -435 305 303 84 58 chr12 141935999 141936154 -2346335 + L1ME3A LINE L1 5994 6152 -18 247 255 10 10 chr12 141936421 141936523 -2345966 + (TG)n Simple_repeat Simple_repeat 2 103 0 323 243 146 56 chr12 141936954 141937034 -2345455 + MIR SINE MIR 75 146 -116 1485 164 0 19 chr12 141937034 141937297 -2345192 - AluJb SINE Alu -7 305 48 323 243 146 56 chr12 141937297 141937360 -2345129 + MIR SINE MIR 146 231 -31 207 0 0 0 chr12 141938854 141938877 -2343612 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 395 38 19 0 chr12 141938876 141938929 -2343560 + (TG)n Simple_repeat Simple_repeat 1 54 0 388 239 67 0 chr12 141940504 141940638 -2341851 + L2 LINE L2 1540 1682 -1632 1024 151 110 0 chr12 141940638 141940857 -2341632 + L1P LINE L1 5108 5350 -796 5642 202 16 32 chr12 141940858 141942261 -2340228 + L1MC3 LINE L1 5146 5403 -743 2714 183 48 11 chr12 141942258 141942826 -2339663 + L1MC3 LINE L1 6905 7493 -292 * 3093 107 7 2 chr12 141942816 141943264 -2339225 + L1PA15 LINE L1 5336 5785 -380 612 138 18 9 chr12 141943264 141943368 -2339121 + L1PB2 LINE L1 6042 6151 0 2692 91 37 5 chr12 141943404 141943787 -2338702 + L1PA15 LINE L1 5769 6163 -2 205 342 35 9 chr12 141943799 141943913 -2338576 + L2 LINE L2 1712 1828 -1486 609 349 41 9 chr12 141943937 141944401 -2338088 - L2 LINE L2 -984 2330 1852 349 248 133 19 chr12 141944408 141944513 -2337976 + MLT1D LTR MaLR 387 503 -2 526 121 43 0 chr12 141944607 141944723 -2337766 + (TAGA)n Simple_repeat Simple_repeat 2 122 0 733 103 22 49 chr12 141944748 141944932 -2337557 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 350 117 58 19 chr12 141944944 141945047 -2337442 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 583 326 101 19 chr12 141945415 141946065 -2336424 + L2 LINE L2 2622 3313 0 241 312 119 46 chr12 141946999 141947217 -2335272 - MIR SINE MIR 0 262 29 1374 243 70 5 chr12 141947325 141947699 -2334790 - MLT1C LTR MaLR -7 460 63 191 282 73 55 chr12 141947750 141947860 -2334629 - MIR SINE MIR -112 150 39 498 332 15 10 chr12 141948556 141948755 -2333734 - MIR SINE MIR -4 258 59 1048 205 5 0 chr12 141949202 141949397 -2333092 + L1MC4a LINE L1 7083 7278 -530 340 313 62 8 chr12 141950331 141950459 -2332030 - L2 LINE L2 0 3313 3179 940 146 11 0 chr12 141950590 141950768 -2331721 + (ATG)n Simple_repeat Simple_repeat 1 180 0 978 118 26 11 chr12 141950710 141950991 -2331498 + (ATGGTG)n Simple_repeat Simple_repeat 1 466 0 219 218 0 0 chr12 141950993 141951048 -2331441 + GA-rich Low_complexity Low_complexity 3 57 0 206 405 0 23 chr12 141951070 141951201 -2331288 + MIR3 SINE MIR 15 142 -66 27 29 0 0 chr12 141951368 141951402 -2331087 + AT_rich Low_complexity Low_complexity 1 34 0 284 229 12 60 chr12 141952146 141952229 -2330260 + L1M4 LINE L1 3740 3818 -2328 303 277 49 49 chr12 141952301 141952367 -2330122 + L1MEd LINE L1 894 959 -5160 1605 180 53 117 chr12 141952367 141952878 -2329611 + MER66A LTR ERV1 1 478 0 303 277 49 49 chr12 141952878 141952995 -2329494 + L1MEd LINE L1 958 1077 -5042 284 193 114 44 chr12 141953190 141953304 -2329185 - L2 LINE L2 -1 3312 3191 256 319 0 0 chr12 141953489 141953558 -2328931 + L2 LINE L2 3187 3255 -58 1096 212 136 64 chr12 141953704 141954110 -2328379 + MER63B DNA MER1_type 1 435 -1 277 323 149 29 chr12 141956393 141956808 -2325681 - L2 LINE L2 -493 2821 2357 1226 189 132 23 chr12 141958186 141958451 -2324038 - AluJo SINE Alu -7 295 2 4866 149 70 58 chr12 141958629 141960146 -2322343 - pTR5 LTR ERV1 0 2438 75 241 246 0 0 chr12 141960812 141960881 -2321608 + (TA)n Simple_repeat Simple_repeat 2 70 0 463 134 0 0 chr12 141961037 141961104 -2321385 - AluJ/FRAM SINE Alu -23 289 223 417 131 0 0 chr12 141961102 141961163 -2321326 - AluJ/FRAM SINE Alu -29 283 223 * 373 140 0 0 chr12 141961163 141961220 -2321269 - AluJ/FRAM SINE Alu -21 281 225 1757 161 4 11 chr12 141961220 141961500 -2320989 - AluJo SINE Alu -29 283 6 290 313 72 48 chr12 141961680 141961888 -2320601 - MLT1I LTR MaLR -6 403 191 207 235 0 112 chr12 141961995 141962093 -2320396 + L2 LINE L2 2191 2277 -1037 1561 272 87 17 chr12 141962093 141962787 -2319702 + L2 LINE L2 2233 2974 -340 1900 115 43 43 chr12 141963556 141963861 -2318628 - AluSx SINE Alu -7 305 1 224 222 0 0 chr12 141965152 141965197 -2317292 - L2 LINE L2 -4 3268 3224 203 388 23 31 chr12 141965343 141965472 -2317017 - L2 LINE L2 -213 3059 2932 197 353 139 0 chr12 141965763 141965964 -2316525 - L2 LINE L2 -904 2410 2182 250 358 128 15 chr12 141966111 141966502 -2315987 - L2 LINE L2 -1193 2121 1687 488 342 57 9 chr12 141966808 141967036 -2315453 - L3 LINE CR1 -2 1575 1337 395 320 22 11 chr12 141967069 141967247 -2315242 + MIR SINE MIR 38 217 -45 517 271 45 96 chr12 141967356 141967710 -2314779 - L3 LINE CR1 -308 1269 934 250 311 30 23 chr12 141967804 141967936 -2314553 + MIR SINE MIR 106 238 -24 1981 132 4 0 chr12 141967966 141968290 -2314199 - AluSx SINE Alu 0 325 1 2055 158 28 8 chr12 141969271 141969633 -2312856 + L1PA16 LINE L1 5789 6157 -9 261 0 0 0 chr12 141969662 141969691 -2312798 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1372 191 18 0 chr12 141970025 141970298 -2312191 - L1MA4A LINE L1 -5 6298 6021 1082 88 21 42 chr12 141970378 141970570 -2311919 - L1MA4A LINE L1 -261 6042 5855 963 208 24 0 chr12 141971365 141971572 -2310917 + MER20 DNA MER1_type 2 213 -6 243 0 0 0 chr12 141971915 141971942 -2310547 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr12 141972903 141972924 -2309565 + AT_rich Low_complexity Low_complexity 1 21 0 284 70 23 0 chr12 141973196 141973239 -2309250 + (CA)n Simple_repeat Simple_repeat 1 44 0 206 211 0 0 chr12 141973359 141973397 -2309092 + (CCAA)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr12 141973514 141973534 -2308955 + (A)n Simple_repeat Simple_repeat 1 20 0 2254 97 37 0 chr12 141973660 141973959 -2308530 - AluSx SINE Alu -2 310 1 292 310 106 29 chr12 141974124 141974398 -2308091 - MLT1J2 LTR MaLR -41 409 115 2368 139 23 120 chr12 141974464 141974989 -2307500 - MER101 LTR ERV1 0 474 1 289 293 107 36 chr12 141975055 141975195 -2307294 - MIR SINE MIR -49 213 64 704 191 19 6 chr12 141976202 141976513 -2305976 + CT-rich Low_complexity Low_complexity 1 315 0 3846 163 45 9 chr12 141976542 141977216 -2305273 - L1MC1 LINE L1 -6 6327 5630 3053 217 37 33 chr12 141977240 141977624 -2304865 - L1MC1 LINE L1 -743 5403 5022 2045 136 3 0 chr12 141977624 141977911 -2304578 - AluSx SINE Alu -24 288 1 3053 217 37 33 chr12 141977911 141978582 -2303907 - L1MC1 LINE L1 -1124 5022 4478 186 227 102 45 chr12 141978725 141978813 -2303676 + MIR SINE MIR 132 224 -38 304 276 154 33 chr12 141980332 141980546 -2301943 + MIR SINE MIR 11 250 -12 2762 122 6 53 chr12 141980816 141981290 -2301199 + L1PA13 LINE L1 5712 6163 0 852 139 22 0 chr12 141981656 141981793 -2300696 + L1PB1 LINE L1 6009 6148 -3 2358 114 0 0 chr12 141981895 141982201 -2300288 - AluSx SINE Alu -6 306 1 2155 118 9 19 chr12 141982642 141982957 -2299532 + AluSx SINE Alu 1 312 0 28 0 0 0 chr12 141983665 141983693 -2298796 + AT_rich Low_complexity Low_complexity 1 28 0 218 282 51 97 chr12 141985650 141985772 -2296717 - L2 LINE L2 -48 3265 3154 2239 106 0 13 chr12 141985772 141986083 -2296406 + AluSx SINE Alu 1 307 -5 218 282 51 97 chr12 141986083 141986155 -2296334 - L2 LINE L2 -159 3154 3080 216 250 0 0 chr12 141986495 141986539 -2295950 + MER5A DNA MER1_type 146 189 0 659 204 35 100 chr12 141986735 141986966 -2295523 - MER20 DNA MER1_type -3 216 1 1624 163 27 114 chr12 141987176 141987587 -2294902 + THE1C LTR MaLR 1 375 0 426 292 143 0 chr12 141987665 141987874 -2294615 + L1ME3 LINE L1 5816 6054 -108 718 136 24 40 chr12 141987881 141988006 -2294483 - MER1B DNA MER1_type -13 326 204 832 158 38 66 chr12 141988105 141988288 -2294201 + MER20 DNA MER1_type 1 178 -41 1273 135 6 0 chr12 141988293 141988471 -2294018 - MER1B DNA MER1_type -118 179 1 245 329 0 0 chr12 141988476 141988555 -2293934 + L1ME3 LINE L1 6052 6130 -32 2132 73 0 15 chr12 141988555 141988816 -2293673 + AluSq SINE Alu 1 257 -56 365 0 0 22 chr12 141990353 141990399 -2292090 + (TG)n Simple_repeat Simple_repeat 1 45 0 225 191 32 16 chr12 141990846 141990909 -2291580 + (TA)n Simple_repeat Simple_repeat 1 64 0 225 65 0 0 chr12 141991565 141991596 -2290893 + (TG)n Simple_repeat Simple_repeat 2 32 0 302 219 55 19 chr12 141991637 141991784 -2290705 - MER46C DNA MER2_type -1 337 112 463 210 204 24 chr12 141991842 141992007 -2290482 - MIR SINE MIR -59 203 18 248 235 176 20 chr12 141992326 141992428 -2290061 + MIR SINE MIR 27 144 -118 993 267 99 29 chr12 141993204 141993586 -2288903 - MLT1I LTR MaLR 0 409 1 294 304 95 14 chr12 141993677 141993825 -2288664 + LTR67 LTR ERVL 123 282 -275 1042 151 96 9 chr12 141993968 141994186 -2288303 - L1MB3 LINE L1 -2 6181 5945 469 149 0 0 chr12 141994210 141994284 -2288205 + LTR67 LTR ERVL 482 555 -2 21 0 0 0 chr12 141994802 141994823 -2287666 + AT_rich Low_complexity Low_complexity 1 21 0 1540 209 0 16 chr12 141994894 141995201 -2287288 + MLT1A2 LTR MaLR 41 342 -32 263 292 125 0 chr12 141995222 141995342 -2287147 - L2 LINE L2 -162 3151 3017 701 232 184 41 chr12 141995342 141995956 -2286533 - LTR50 LTR ERVL 0 795 3 206 395 125 0 chr12 141995956 141996108 -2286381 - L2 LINE L2 -290 3023 2853 301 266 151 75 chr12 141996404 141996656 -2285833 + MLT1J LTR MaLR 240 510 -1 1609 151 12 98 chr12 141996920 141997245 -2285244 - AluJo SINE Alu -15 297 1 2135 96 4 4 chr12 141997293 141997607 -2284882 + AluY SINE Alu 1 314 0 415 326 14 7 chr12 141998023 141998167 -2284322 + MIR SINE MIR 21 165 -97 254 183 18 0 chr12 141998220 141998283 -2284206 - HsTC2c DNA Tc2 0 729 666 4724 213 44 14 chr12 141998361 142000293 -2282196 + L1PA12 LINE L1 4165 6168 0 2611 218 38 12 chr12 142000294 142000873 -2281616 + L1MB7 LINE L1 5591 6184 0 2360 119 12 0 chr12 142000889 142001224 -2281265 - L1PA15 LINE L1 -4 6161 5823 731 234 209 9 chr12 142001294 142001571 -2280918 + MLT1G1 LTR MaLR 215 505 -44 1382 285 160 17 chr12 142001577 142002166 -2280323 - HsTC2c DNA Tc2 -56 673 1 673 188 0 32 chr12 142003022 142003208 -2279281 + (TG)n Simple_repeat Simple_repeat 1 180 0 612 232 0 0 chr12 142003226 142003403 -2279086 + (TG)n Simple_repeat Simple_repeat 2 178 0 308 154 0 0 chr12 142003436 142003488 -2279001 + MER4-int LTR ERV1 1112 1163 -5435 618 146 0 0 chr12 142003488 142003598 -2278891 + (TG)n Simple_repeat Simple_repeat 2 111 0 506 226 50 31 chr12 142003598 142003757 -2278732 + MER112 DNA MER1_type 79 240 -20 183 368 26 0 chr12 142003922 142003998 -2278491 + L2 LINE L2 3134 3211 -61 484 260 199 30 chr12 142004606 142005064 -2277425 + L2 LINE L2 2577 3113 -200 1124 230 167 2 chr12 142005193 142005588 -2276901 + MLT1C LTR MaLR 1 460 -7 263 304 283 12 chr12 142005827 142006074 -2276415 - L2 LINE L2 -477 2837 2524 289 324 98 5 chr12 142006168 142006372 -2276117 - L2 LINE L2 -1058 2256 2034 210 105 0 0 chr12 142006372 142006410 -2276079 + (GA)n Simple_repeat Simple_repeat 2 39 0 214 353 41 33 chr12 142006497 142006619 -2275870 + MIR SINE MIR 123 245 -17 430 248 32 8 chr12 142006661 142006786 -2275703 - MER94 DNA DNA -4 130 3 21 0 0 0 chr12 142007237 142007258 -2275231 + AT_rich Low_complexity Low_complexity 1 21 0 791 89 0 36 chr12 142007428 142007540 -2274949 - AluSg/x SINE Alu -17 293 186 3473 202 42 50 chr12 142007959 142008184 -2274305 - L1MB7 LINE L1 -1 6183 5958 1518 170 33 11 chr12 142008184 142008455 -2274034 - AluJo SINE Alu -14 298 22 3473 202 42 50 chr12 142008455 142009042 -2273447 - L1MB7 LINE L1 -226 5958 5367 2541 58 0 0 chr12 142009042 142009353 -2273136 - AluY SINE Alu 0 311 1 3473 202 42 50 chr12 142009353 142010085 -2272404 - L1MB7 LINE L1 -817 5367 4659 1287 226 95 33 chr12 142010395 142010825 -2271664 - MLT1C LTR MaLR -2 465 9 563 330 60 24 chr12 142010831 142011249 -2271240 + LTR33 LTR ERVL 86 518 -3 607 340 19 19 chr12 142011978 142012352 -2270137 - L1ME4a LINE L1 -216 5905 5532 1482 191 3 14 chr12 142012354 142012661 -2269828 - AluJb SINE Alu 0 309 6 239 245 43 21 chr12 142012782 142012876 -2269613 - L1ME4a LINE L1 -985 5349 5254 21 0 0 0 chr12 142013173 142013194 -2269295 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr12 142013370 142013390 -2269099 + (CA)n Simple_repeat Simple_repeat 1 20 0 381 258 53 0 chr12 142013516 142013648 -2268841 - LTR41 LTR ERVL -6 767 629 301 304 163 22 chr12 142013976 142014203 -2268286 - L1MB7 LINE L1 -1488 4658 4400 * 349 322 104 33 chr12 142014177 142014388 -2268101 - L1MB7 LINE L1 -1949 4197 3972 607 299 55 13 chr12 142014408 142014716 -2267773 - L1MB7 LINE L1 -2215 3931 3611 534 215 63 63 chr12 142014949 142015004 -2267485 + MIR SINE MIR 105 159 -103 1796 212 97 2 chr12 142015004 142015428 -2267061 - MLT1C LTR MaLR 0 467 4 534 215 63 63 chr12 142015428 142015530 -2266959 + MIR SINE MIR 158 262 0 21 0 0 0 chr12 142015750 142015771 -2266718 + GC_rich Low_complexity Low_complexity 1 21 0 243 311 30 52 chr12 142015851 142015986 -2266503 + LTR33 LTR ERVL 334 465 -56 249 323 123 13 chr12 142016088 142016243 -2266246 - MIR SINE MIR -6 256 85 2538 153 102 5 chr12 142016274 142016717 -2265772 + MER66B LTR ERV1 1 486 0 1921 111 37 0 chr12 142016814 142017085 -2265404 + AluSq SINE Alu 1 281 -32 946 111 11 22 chr12 142017088 142017269 -2265220 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2430 124 5 24 chr12 142017443 142017814 -2264675 - THE1B LTR MaLR 0 364 1 694 276 130 31 chr12 142017993 142018286 -2264203 + MER5C DNA MER1_type 3 324 0 560 119 24 0 chr12 142018407 142018491 -2263998 - THE1B LTR MaLR -226 138 53 495 327 24 6 chr12 142019920 142020085 -2262404 + MIR SINE MIR 45 212 -50 270 0 0 0 chr12 142021190 142021220 -2261269 + (CA)n Simple_repeat Simple_repeat 1 30 0 1894 138 0 45 chr12 142021368 142021514 -2260975 + AluJb SINE Alu 1 127 -185 1889 136 18 0 chr12 142021514 142021800 -2260689 + AluSg SINE Alu 1 291 -19 1894 138 0 45 chr12 142021800 142021965 -2260524 + AluJb SINE Alu 127 298 -14 309 51 0 0 chr12 142023162 142023201 -2259288 + (CA)n Simple_repeat Simple_repeat 1 39 0 291 237 0 0 chr12 142023284 142023377 -2259112 + G-rich Low_complexity Low_complexity 3 95 0 361 289 61 17 chr12 142023392 142023572 -2258917 - L1ME4a LINE L1 -203 5918 5731 378 311 88 26 chr12 142024270 142024485 -2258004 + MIR SINE MIR 23 261 -1 198 321 136 0 chr12 142024616 142024778 -2257711 - L2 LINE L2 -340 2974 2791 211 343 10 20 chr12 142025005 142025104 -2257385 - MIR SINE MIR 0 262 165 7240 221 50 9 chr12 142025119 142027821 -2254668 - L1MB8 LINE L1 0 6178 3382 274 213 50 25 chr12 142027823 142027903 -2254586 - MIR SINE MIR -107 155 74 251 321 33 23 chr12 142027970 142028185 -2254304 + L1MB5 LINE L1 4628 4844 -1302 299 297 0 0 chr12 142028355 142028429 -2254060 + MLT1L LTR MaLR 176 249 -366 841 236 98 14 chr12 142028548 142028824 -2253665 - HAL1 LINE L1 -793 1714 1416 1898 134 0 0 chr12 142028876 142029153 -2253336 + AluSx SINE Alu 1 277 -35 235 318 137 25 chr12 142029155 142029942 -2252547 - L1ME4a LINE L1 -770 5376 4502 428 337 90 22 chr12 142029989 142030256 -2252233 + L1MB5 LINE L1 5478 5762 -359 197 375 0 0 chr12 142031053 142031125 -2251364 - MIR SINE MIR -16 246 175 257 330 84 28 chr12 142031958 142032137 -2250352 + MER5A DNA MER1_type 1 189 0 249 274 14 0 chr12 142032142 142032215 -2250274 - MLT1L LTR MaLR -4 611 538 307 253 127 89 chr12 142032230 142032467 -2250022 - MLT1L LTR MaLR -226 389 144 514 208 8 17 chr12 142032552 142032672 -2249817 + L1MA4 LINE L1 6179 6297 -3 284 298 42 37 chr12 142033396 142033587 -2248902 - Charlie7 DNA MER1_type -1 2611 2420 487 299 89 43 chr12 142033684 142034076 -2248413 - Charlie7 DNA MER1_type -2096 516 107 422 263 76 23 chr12 142034337 142034508 -2247981 - MER5A DNA MER1_type 0 189 10 2015 196 50 14 chr12 142034902 142035403 -2247086 - L1MB3 LINE L1 -3 6180 5662 811 184 101 28 chr12 142035429 142035608 -2246881 + AluJo SINE Alu 100 291 -21 446 230 18 9 chr12 142036176 142036289 -2246200 - MER5A DNA MER1_type -43 146 33 1854 191 83 8 chr12 142037197 142037596 -2244893 + L1MB5 LINE L1 5746 6174 0 1662 110 15 128 chr12 142039083 142039419 -2243070 + AluJb SINE Alu 1 298 -4 754 129 173 0 chr12 142039432 142039571 -2242918 + FRAM SINE Alu 4 166 0 209 227 180 31 chr12 142039830 142039958 -2242531 + MER5A DNA MER1_type 43 189 0 344 196 0 93 chr12 142040336 142040530 -2241959 + (CGGGG)n Simple_repeat Simple_repeat 5 180 0 200 257 14 43 chr12 142040568 142040708 -2241781 + (CGGGG)n Simple_repeat Simple_repeat 5 140 0 327 268 84 113 chr12 142041038 142041761 -2240728 - L1M2 LINE L1 -5396 1453 752 211 245 0 53 chr12 142041763 142041857 -2240632 + G-rich Low_complexity Low_complexity 2 90 0 1661 155 24 10 chr12 142043216 142043512 -2238977 - MER1B DNA MER1_type 0 339 40 180 0 0 0 chr12 142043523 142043543 -2238946 + (TGG)n Simple_repeat Simple_repeat 1 20 0 377 133 13 0 chr12 142045018 142045093 -2237396 + (TG)n Simple_repeat Simple_repeat 2 77 0 26 50 0 0 chr12 142045712 142045752 -2236737 + AT_rich Low_complexity Low_complexity 1 40 0 180 219 133 86 chr12 142046200 142046305 -2236184 + MIR SINE MIR 102 211 -51 264 267 0 118 chr12 142046427 142046481 -2236008 - L2 LINE L2 -522 2792 2733 2328 68 0 7 chr12 142046481 142046789 -2235700 - AluY SINE Alu -5 306 1 264 267 0 118 chr12 142046789 142046869 -2235620 - L2 LINE L2 -581 2733 2674 184 278 176 19 chr12 142047298 142047406 -2235083 - MIR SINE MIR -50 212 88 1197 246 52 21 chr12 142050558 142050888 -2231601 - MER58B DNA MER1_type -1 340 1 761 183 44 0 chr12 142051341 142051478 -2231011 + L1PA16 LINE L1 6022 6164 -2 2104 84 30 0 chr12 142051483 142051780 -2230709 + AluSg1 SINE Alu 1 306 -3 227 335 107 39 chr12 142054104 142054310 -2228179 + L2 LINE L2 2044 2263 -1051 2037 105 29 4 chr12 142055259 142055535 -2226954 + AluSx SINE Alu 1 283 -29 183 80 0 0 chr12 142055535 142055560 -2226929 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2255 103 3 3 chr12 142056507 142056807 -2225682 + AluSx SINE Alu 1 300 -12 612 108 0 0 chr12 142058552 142058635 -2223854 - AluY SINE Alu -16 295 213 273 313 68 20 chr12 142059405 142059552 -2222937 + MIR SINE MIR 88 241 -21 373 267 116 52 chr12 142061217 142061389 -2221100 + MIR SINE MIR 5 187 -75 185 328 104 16 chr12 142061619 142061744 -2220745 + L2 LINE L2 3121 3256 -16 2136 112 10 0 chr12 142063216 142063510 -2218979 + AluSq SINE Alu 1 297 -16 1944 116 32 0 chr12 142064942 142065227 -2217262 - L1PA13 LINE L1 -6 6157 5864 2348 105 0 0 chr12 142066475 142066780 -2215709 - AluSx SINE Alu -7 305 1 218 246 58 0 chr12 142069023 142069092 -2213397 - MIR SINE MIR -2 260 188 194 105 26 0 chr12 142069519 142069557 -2212932 + (TATG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr12 142070223 142070251 -2212238 + AT_rich Low_complexity Low_complexity 1 28 0 1908 154 7 0 chr12 142070674 142070960 -2211529 - AluSx SINE Alu -24 288 1 6607 83 35 7 chr12 142071748 142072791 -2209698 - L1PA10 LINE L1 0 6168 5111 183 354 94 10 chr12 142072858 142072954 -2209535 + MIR SINE MIR 38 141 -67 1726 130 110 10 chr12 142073150 142073450 -2209039 - MER2 DNA MER2_type 0 345 16 1405 75 124 0 chr12 142075289 142075490 -2206999 + AluSg/x SINE Alu 87 312 0 627 207 7 14 chr12 142075700 142075840 -2206649 + AluSp/q SINE Alu 175 313 0 240 290 72 51 chr12 142076769 142076907 -2205582 - MER5A DNA MER1_type -6 183 43 770 278 194 14 chr12 142077869 142078384 -2204105 + L2 LINE L2 49 656 -2658 1423 274 261 14 chr12 142078405 142079386 -2203103 + L2 LINE L2 1103 2325 -989 605 193 42 0 chr12 142079386 142079505 -2202984 - Charlie1 DNA MER1_type 0 2761 2638 * 733 266 77 13 chr12 142079484 142079717 -2202772 - Charlie1 DNA MER1_type -2513 248 1 489 249 279 33 chr12 142079769 142080070 -2202419 + L2 LINE L2 2396 2770 -544 490 322 142 12 chr12 142080126 142080471 -2202018 + L2 LINE L2 2920 3309 -4 196 319 74 15 chr12 142080557 142080692 -2201797 - MER5B DNA MER1_type 0 178 36 2005 253 98 17 chr12 142081227 142082155 -2200334 - L1ME2 LINE L1 -9 6155 5157 189 261 65 0 chr12 142082473 142082519 -2199970 + L2 LINE L2 3224 3272 0 4489 174 39 3 chr12 142083621 142084481 -2198008 - L1MC1 LINE L1 -223 6110 5221 331 280 119 25 chr12 142086301 142086537 -2195952 - L1ME4a LINE L1 -169 5952 5695 22 70 0 0 chr12 142087225 142087268 -2195221 + AT_rich Low_complexity Low_complexity 1 43 0 369 242 87 57 chr12 142090205 142090455 -2192034 - L1MC1 LINE L1 -1001 5145 4880 845 178 37 12 chr12 142090456 142090619 -2191870 - AluJo SINE Alu -19 293 127 877 287 148 27 chr12 142090775 142091990 -2190499 - L1MC1 LINE L1 -1478 4668 3259 249 237 331 16 chr12 142092050 142092295 -2190194 - L1MC1 LINE L1 -2971 3175 2854 1163 280 70 19 chr12 142092591 142093005 -2189484 + LTR40a LTR ERVL 1 435 -84 240 315 14 0 chr12 142093057 142093130 -2189359 + CT-rich Low_complexity Low_complexity 1 74 0 255 263 109 51 chr12 142096008 142096164 -2186325 - L1ME LINE L1 -367 5754 5590 32 0 0 0 chr12 142101544 142101576 -2180913 + AT_rich Low_complexity Low_complexity 1 32 0 225 250 62 12 chr12 142102487 142102567 -2179922 + MER5B DNA MER1_type 2 85 -93 1013 194 181 21 chr12 142103010 142103468 -2179021 + L1MB3 LINE L1 5159 5542 -641 2290 108 3 10 chr12 142103468 142103773 -2178716 - AluSx SINE Alu -9 303 1 1013 194 181 21 chr12 142103773 142103808 -2178681 + L1MB3 LINE L1 5542 6174 -9 200 367 121 5 chr12 142103928 142104143 -2178346 + L2 LINE L2 2036 2275 -1039 441 309 95 62 chr12 142105868 142106205 -2176284 + L1 LINE L1 3438 3785 -2361 1911 106 8 8 chr12 142106661 142106917 -2175572 - AluSx SINE Alu -15 297 42 25 31 0 0 chr12 142107289 142107321 -2175168 + AT_rich Low_complexity Low_complexity 1 32 0 309 339 88 46 chr12 142107381 142107641 -2174848 + L1 LINE L1 4992 5262 -884 1888 164 21 0 chr12 142109015 142109301 -2173188 - AluSx SINE Alu -20 292 1 4211 261 52 16 chr12 142111469 142111695 -2170794 - L1ME1 LINE L1 -3 6163 5947 2529 52 3 7 chr12 142111695 142112005 -2170484 - AluY SINE Alu -2 309 1 4211 261 52 16 chr12 142112005 142113836 -2168653 - L1ME1 LINE L1 -219 5947 4030 23 33 0 0 chr12 142115238 142115268 -2167221 + AT_rich Low_complexity Low_complexity 1 30 0 2202 97 0 27 chr12 142115724 142116022 -2166467 + AluSx SINE Alu 16 305 -7 828 217 12 101 chr12 142116525 142116852 -2165637 - MER33 DNA MER1_type -22 302 5 1854 139 26 0 chr12 142117254 142117520 -2164969 + AluSx SINE Alu 31 303 -9 195 259 0 0 chr12 142119216 142119274 -2163215 + CT-rich Low_complexity Low_complexity 4 61 0 7192 169 45 75 chr12 142120324 142121431 -2161058 + L1PA16 LINE L1 3385 4524 -1642 180 0 0 0 chr12 142121431 142121451 -2161038 + (CA)n Simple_repeat Simple_repeat 1 20 0 7192 169 45 75 chr12 142121451 142123216 -2159273 + L1PA16 LINE L1 4524 6157 -9 208 311 0 0 chr12 142123257 142123331 -2159158 + (TA)n Simple_repeat Simple_repeat 2 75 0 26 0 0 0 chr12 142125417 142125443 -2157046 + AT_rich Low_complexity Low_complexity 1 26 0 297 0 0 0 chr12 142127169 142127202 -2155287 + (TG)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr12 142129134 142129154 -2153335 + (A)n Simple_repeat Simple_repeat 1 20 0 238 244 152 86 chr12 142131543 142131740 -2150749 - MER102b DNA MER1_type 0 341 132 2361 99 0 3 chr12 142131753 142132055 -2150434 - AluSc SINE Alu -8 301 1 2506 63 0 0 chr12 142134293 142134594 -2147895 + AluY SINE Alu 1 301 -10 266 250 12 38 chr12 142135595 142135675 -2146814 - MIR SINE MIR -94 114 37 232 248 34 120 chr12 142136067 142136103 -2146386 + L1MA9 LINE L1 6182 6219 -93 2338 115 0 0 chr12 142136103 142136408 -2146081 - AluSx SINE Alu -7 305 1 232 248 34 120 chr12 142136408 142136488 -2146001 + L1MA9 LINE L1 6219 6288 -24 344 178 164 0 chr12 142136644 142136717 -2145772 - L2 LINE L2 0 3313 3229 298 260 133 0 chr12 142136872 142137022 -2145467 + MER113 DNA MER1_type? 13 182 -339 39 60 0 0 chr12 142137022 142137089 -2145400 + AT_rich Low_complexity Low_complexity 1 67 0 259 252 52 61 chr12 142138079 142138194 -2144295 + L2 LINE L2 2844 2957 -315 429 270 0 0 chr12 142138625 142138725 -2143764 + MIR SINE MIR 36 135 -127 251 160 0 100 chr12 142139048 142139098 -2143391 - L2 LINE L2 -19 3294 3250 894 324 96 47 chr12 142139923 142141054 -2141435 + L2 LINE L2 1814 3003 -310 2595 139 26 2 chr12 142141058 142141474 -2141015 + MSTB LTR MaLR 1 426 0 211 297 21 97 chr12 142141502 142141647 -2140842 + L2 LINE L2 3150 3283 -30 452 224 197 13 chr12 142143208 142143360 -2139129 + LTR33A LTR ERVL 11 190 -333 356 245 20 0 chr12 142143508 142143610 -2138879 + LTR33A LTR ERVL 411 514 -9 2191 78 4 11 chr12 142143702 142143983 -2138506 + AluY SINE Alu 33 311 0 735 268 19 25 chr12 142144960 142145193 -2137296 - MIR SINE MIR -19 243 15 204 206 0 0 chr12 142146254 142146288 -2136201 + polypurine Low_complexity Low_complexity 1 34 0 434 308 30 6 chr12 142146500 142146669 -2135820 + MIR SINE MIR 47 219 -43 1797 165 3 22 chr12 142146671 142146986 -2135503 + AluJb SINE Alu 3 311 -1 552 289 89 41 chr12 142147002 142147125 -2135364 - L1MDa LINE L1 -3991 2549 2433 2345 119 0 0 chr12 142147125 142147436 -2135053 - AluSx SINE Alu -1 311 1 552 289 89 41 chr12 142147436 142147603 -2134886 - L1MDa LINE L1 -4107 2433 2245 322 310 35 9 chr12 142147745 142147861 -2134628 - L2 LINE L2 -20 3252 3134 211 290 75 11 chr12 142147961 142148054 -2134435 - L2 LINE L2 -23 3249 3151 2284 114 3 0 chr12 142148184 142148490 -2133999 + AluSq SINE Alu 7 313 0 593 249 62 21 chr12 142148637 142149022 -2133467 - MLT1C LTR MaLR -23 444 16 197 437 0 0 chr12 142149395 142149482 -2133007 + L2 LINE L2 3145 3231 -41 244 332 69 55 chr12 142149574 142149776 -2132713 - MIR SINE MIR -33 229 25 1991 141 39 47 chr12 142149909 142150272 -2132217 + THE1B LTR MaLR 1 360 -4 374 234 38 92 chr12 142150731 142151049 -2131440 - MLT1C LTR MaLR -40 350 71 314 167 28 42 chr12 142152891 142152963 -2129526 - L1ME4a LINE L1 -2 6119 6049 258 277 17 25 chr12 142153256 142153375 -2129114 - MLT1K LTR MaLR -17 571 454 296 320 19 0 chr12 142153528 142153631 -2128858 - MLT1L LTR MaLR -335 280 176 882 250 131 22 chr12 142154704 142155093 -2127396 + L2 LINE L2 2582 3022 -291 290 180 0 0 chr12 142155357 142155418 -2127071 - L1MB5 LINE L1 0 6174 6114 * 367 198 0 42 chr12 142155402 142155498 -2126991 + L1M3 LINE L1 5334 5425 -759 * 2258 184 77 21 chr12 142155476 142156018 -2126471 + L1MA10 LINE L1 5752 6322 -12 307 213 0 0 chr12 142156027 142156088 -2126401 + L1M3 LINE L1 5413 5473 -711 512 138 106 0 chr12 142156088 142156182 -2126307 - AluJb SINE Alu -8 304 201 529 173 156 36 chr12 142156194 142156366 -2126123 + L1M3 LINE L1 5459 5650 -530 261 321 67 8 chr12 142156367 142156501 -2125988 + L2 LINE L2 3172 3313 0 267 287 92 0 chr12 142157046 142157133 -2125356 + Charlie8 DNA MER1_type 1 95 -2322 246 105 0 0 chr12 142157134 142157172 -2125317 + (CA)n Simple_repeat Simple_repeat 2 39 0 1765 231 109 14 chr12 142157290 142157805 -2124684 + MLT1F1 LTR MaLR 4 567 0 293 222 361 10 chr12 142158687 142158881 -2123608 + LTR50 LTR ERVL 534 795 0 1828 160 136 0 chr12 142160475 142160849 -2121640 + MSTA LTR MaLR 4 428 0 1872 173 0 7 chr12 142161105 142161411 -2121078 + AluJb SINE Alu 1 304 -8 352 301 9 26 chr12 142161862 142161975 -2120514 - L2 LINE L2 -4 3309 3199 1915 79 4 17 chr12 142162380 142162621 -2119868 - AluSq SINE Alu -9 304 67 503 239 80 27 chr12 142162651 142162902 -2119587 + L2 LINE L2 2731 2992 -280 283 265 19 84 chr12 142163825 142163933 -2118556 + MIR SINE MIR 46 147 -61 213 226 85 57 chr12 142163925 142164031 -2118458 - MIR SINE MIR 0 262 154 * 1525 212 44 34 chr12 142164045 142164431 -2118058 + MLT1B LTR MaLR 1 390 0 2726 200 54 25 chr12 142164495 142165146 -2117343 + LTR51 LTR ERV1 1 670 -1 395 295 281 3 chr12 142165179 142165521 -2116968 + MLT1L LTR MaLR 151 587 -28 2250 116 7 0 chr12 142166640 142166933 -2115556 - AluSx SINE Alu -17 295 1 289 327 6 36 chr12 142167872 142168040 -2114449 + (TATG)n Simple_repeat Simple_repeat 3 165 0 210 211 14 42 chr12 142170547 142170618 -2111871 + CT-rich Low_complexity Low_complexity 1 69 0 296 174 0 14 chr12 142170719 142170788 -2111701 + (TG)n Simple_repeat Simple_repeat 1 68 0 320 305 49 0 chr12 142170789 142170871 -2111618 + L1MC4 LINE L1 6614 6699 -1343 708 198 0 0 chr12 142170871 142171123 -2111366 + (TG)n Simple_repeat Simple_repeat 1 252 0 255 193 0 0 chr12 142171156 142171239 -2111250 + (TG)n Simple_repeat Simple_repeat 1 83 0 594 215 4 0 chr12 142171312 142171589 -2110900 + (TG)n Simple_repeat Simple_repeat 1 278 0 2066 123 0 0 chr12 142172725 142173041 -2109448 + AluSg SINE Alu 14 329 0 211 384 66 28 chr12 142174440 142174651 -2107838 + L2 LINE L2 3095 3313 0 276 170 0 0 chr12 142175338 142175391 -2107098 + (ATGGTG)n Simple_repeat Simple_repeat 3 55 0 563 205 115 6 chr12 142175713 142175869 -2106620 + MLT1A2 LTR MaLR 1 173 -217 363 172 16 54 chr12 142175950 142176136 -2106353 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 798 223 10 26 chr12 142176175 142176368 -2106121 + MLT1A2 LTR MaLR 174 363 -11 855 299 112 10 chr12 142176833 142177251 -2105238 + Zaphod DNA AcHobo 56 516 -3515 248 420 79 15 chr12 142177455 142177784 -2104705 - L2 LINE L2 -464 2850 2501 317 377 13 0 chr12 142178754 142178908 -2103581 - MIR SINE MIR -70 192 37 6202 87 7 11 chr12 142180550 142181553 -2100936 + L1PA10 LINE L1 5161 6159 -9 1698 199 32 7 chr12 142181753 142182158 -2100331 + L1MB5 LINE L1 5504 5864 -310 226 208 0 0 chr12 142182142 142182190 -2100299 + L1M4 LINE L1 5817 5864 -320 * 226 158 0 0 chr12 142182190 142182228 -2100261 + L1MD2 LINE L1 5822 5859 -325 1765 187 20 0 chr12 142182229 142182571 -2099918 + L1MB5 LINE L1 5820 6168 -6 2046 143 47 0 chr12 142182626 142182947 -2099542 - MER1B DNA MER1_type 0 339 4 1356 297 54 10 chr12 142184109 142184627 -2097862 - L1ME3A LINE L1 0 6170 5630 3582 138 21 10 chr12 142185591 142186209 -2096280 + L1PB4 LINE L1 5350 5974 -182 2150 121 0 3 chr12 142186209 142186491 -2095998 + AluSx SINE Alu 1 281 -31 313 233 44 11 chr12 142187360 142187450 -2095039 + L2 LINE L2 3181 3273 -40 234 318 0 0 chr12 142187454 142187520 -2094969 + C-rich Low_complexity Low_complexity 1 66 0 2424 88 3 0 chr12 142188156 142188463 -2094026 + AluSq SINE Alu 1 308 -5 506 303 76 55 chr12 142188475 142188894 -2093595 + L1MD2 LINE L1 5920 6347 -12 192 361 0 0 chr12 142189328 142189389 -2093100 + L2 LINE L2 3245 3305 -8 426 301 12 12 chr12 142189823 142189996 -2092493 + (TAG)n Simple_repeat Simple_repeat 1 173 0 225 234 0 0 chr12 142190054 142190101 -2092388 + (CAG)n Simple_repeat Simple_repeat 2 48 0 451 255 0 0 chr12 142190437 142190535 -2091954 - MSTB LTR MaLR -308 118 21 1663 176 101 42 chr12 142190948 142191334 -2091155 + MSTB LTR MaLR 18 426 0 324 269 124 60 chr12 142193270 142193531 -2088958 + MLT1F LTR MaLR 226 510 -32 1895 162 143 8 chr12 142193531 142193908 -2088581 - MSTA LTR MaLR 0 428 1 324 269 124 60 chr12 142193908 142193944 -2088545 + MLT1F LTR MaLR 510 542 0 855 243 146 42 chr12 142193953 142194523 -2087966 + L2 LINE L2 2634 3313 0 411 65 0 0 chr12 142194546 142194608 -2087881 - L1PA15 LINE L1 0 6165 6104 2303 117 0 0 chr12 142194786 142195094 -2087395 + AluSg SINE Alu 1 308 -2 636 262 185 3 chr12 142195653 142195977 -2086512 + L2 LINE L2 2372 2754 -560 601 290 75 27 chr12 142195982 142196022 -2086467 + MLT1H LTR MaLR 6 43 -506 2253 195 43 0 chr12 142196022 142196488 -2086001 + MER66B LTR ERV1 1 486 0 601 290 75 27 chr12 142196488 142196781 -2085708 + MLT1H LTR MaLR 43 355 -194 281 273 180 9 chr12 142196975 142197223 -2085266 + L2 LINE L2 2786 3075 -238 553 200 9 0 chr12 142197350 142197455 -2085034 - AluSq/x SINE Alu -204 108 3 412 200 51 131 chr12 142197571 142197746 -2084743 + Charlie8 DNA MER1_type 9 169 -2248 2123 117 0 48 chr12 142199434 142199750 -2082739 - AluSg SINE Alu -9 301 1 4683 109 20 0 chr12 142200227 142200940 -2081549 - L1PA14 LINE L1 0 6161 5435 966 114 0 0 chr12 142201529 142201660 -2080829 + AluSc SINE Alu 1 131 -178 488 145 36 0 chr12 142201669 142201752 -2080737 + L1PB4 LINE L1 6064 6149 -7 225 256 56 44 chr12 142201765 142201855 -2080634 - L1MC/D LINE L1 -2465 5530 5440 384 277 54 38 chr12 142202027 142202211 -2080278 - Charlie8 DNA MER1_type -2152 265 79 1616 163 3 64 chr12 142202414 142202727 -2079762 + AluJb SINE Alu 1 294 -18 315 245 0 143 chr12 142202746 142202824 -2079665 - MIR SINE MIR -37 225 137 999 133 0 0 chr12 142202824 142202989 -2079500 + (TA)n Simple_repeat Simple_repeat 1 165 0 1941 135 3 37 chr12 142202989 142203285 -2079204 - AluJb SINE Alu -24 288 3 315 245 0 143 chr12 142203285 142203352 -2079137 - MIR SINE MIR -123 139 100 252 246 0 16 chr12 142203816 142203877 -2078612 + MER3 DNA MER1_type 31 90 -119 * 384 155 0 14 chr12 142203838 142203909 -2078580 - MER3 DNA MER1_type -4 205 136 286 189 19 0 chr12 142203917 142203970 -2078519 + MLT1D LTR MaLR 55 108 -459 1499 239 3 28 chr12 142203991 142204346 -2078143 + L1MD3 LINE L1 7432 7777 -218 267 354 15 15 chr12 142204657 142204787 -2077702 + MIR SINE MIR 59 188 -74 35 54 0 0 chr12 142205028 142205084 -2077405 + AT_rich Low_complexity Low_complexity 1 56 0 375 203 76 0 chr12 142205881 142205960 -2076529 + MER58A DNA MER1_type 12 96 -11 261 332 86 32 chr12 142206100 142206320 -2076169 - L2 LINE L2 -146 3167 2936 288 299 110 63 chr12 142206953 142207216 -2075273 - L2 LINE L2 -515 2799 2511 3250 136 27 2 chr12 142207216 142207701 -2074788 + LOR1a LTR ERV1 1 497 0 288 299 110 63 chr12 142207701 142207818 -2074671 - L2 LINE L2 -803 2511 2401 238 311 317 10 chr12 142208814 142209123 -2073366 - L2 LINE L2 -22 3291 2888 183 42 0 0 chr12 142210276 142210300 -2072189 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 296 208 10 0 chr12 142211771 142211867 -2070622 + (CA)n Simple_repeat Simple_repeat 1 97 0 210 202 48 12 chr12 142212011 142212095 -2070394 + (TA)n Simple_repeat Simple_repeat 2 88 0 440 235 15 59 chr12 142212894 142213030 -2069459 - L2 LINE L2 -4 3309 3180 28 29 0 0 chr12 142213697 142213732 -2068757 + AT_rich Low_complexity Low_complexity 1 35 0 1578 154 19 42 chr12 142214305 142214617 -2067872 + AluSx SINE Alu 5 309 -3 903 239 85 15 chr12 142215664 142215936 -2066553 + MLT1D LTR MaLR 215 505 0 180 385 18 30 chr12 142216274 142216440 -2066049 - L2 LINE L2 0 3313 3150 326 292 92 15 chr12 142217061 142217191 -2065298 - L1 LINE L1 -1907 4239 4100 2470 65 0 3 chr12 142218308 142218617 -2063872 + AluY SINE Alu 2 309 -2 268 331 16 8 chr12 142218729 142218856 -2063633 - MIR SINE MIR -1 261 134 1487 186 0 0 chr12 142218936 142219188 -2063301 + AluJb SINE Alu 39 290 -22 246 306 14 0 chr12 142219200 142219272 -2063217 - MIR SINE MIR -155 107 35 496 297 119 27 chr12 142219563 142219782 -2062707 + MIR SINE MIR 5 243 -19 332 313 27 27 chr12 142220039 142220186 -2062303 - MIR SINE MIR -10 252 106 328 273 91 14 chr12 142220218 142220361 -2062128 - MIR SINE MIR -3 259 106 651 278 101 0 chr12 142220423 142220621 -2061868 - MIR SINE MIR -40 222 5 28 0 0 0 chr12 142220723 142220751 -2061738 + AT_rich Low_complexity Low_complexity 1 28 0 336 426 55 73 chr12 142221857 142222364 -2060125 - LTR33 LTR ERVL -1 520 23 1681 208 56 10 chr12 142222486 142222895 -2059594 + MLT1C LTR MaLR 1 428 -39 666 268 33 12 chr12 142223029 142223233 -2059256 + MLT1E LTR MaLR 419 591 -2 534 289 16 79 chr12 142223376 142223629 -2058860 + MIR SINE MIR 25 261 -1 2609 185 42 23 chr12 142224569 142225137 -2057352 - L1MA7 LINE L1 0 6291 5713 400 305 36 17 chr12 142225316 142225455 -2057034 + MIR SINE MIR 33 176 -64 334 295 13 83 chr12 142225471 142225627 -2056862 - MIR SINE MIR -92 170 26 887 178 72 0 chr12 142225866 142226046 -2056443 - MER20 DNA MER1_type 0 219 27 2354 206 2 15 chr12 142226358 142226823 -2055666 + MLT1C LTR MaLR 1 459 -8 664 311 21 53 chr12 142227419 142227889 -2054600 - L1ME4a LINE L1 -183 5938 5484 236 301 48 39 chr12 142228419 142228524 -2053965 - MIR SINE MIR -88 120 14 213 303 20 72 chr12 142228781 142228933 -2053556 - L2 LINE L2 -557 2757 2614 207 0 0 0 chr12 142229106 142229129 -2053360 + (GGA)n Simple_repeat Simple_repeat 1 23 0 318 336 34 7 chr12 142229424 142229570 -2052919 + L1MB7 LINE L1 5899 6048 -136 884 255 108 39 chr12 142231666 142232054 -2050435 + MLT1C LTR MaLR 47 461 -6 367 293 53 8 chr12 142232676 142232809 -2049680 + L2 LINE L2 2642 2780 -534 380 271 54 30 chr12 142233775 142233941 -2048548 + MLT1K LTR MaLR 413 582 -6 1055 267 56 49 chr12 142235476 142235812 -2046677 + L1MA9 LINE L1 5753 6094 -218 2106 117 0 0 chr12 142235812 142236111 -2046378 + AluSx SINE Alu 9 307 -5 1055 267 56 49 chr12 142236111 142236220 -2046269 + L1MA9 LINE L1 6094 6201 -111 529 173 39 83 chr12 142236339 142236495 -2045994 + L1MA9 LINE L1 6164 6312 0 809 253 92 46 chr12 142237034 142237295 -2045194 + MER68 LTR ERV1 23 295 -267 321 220 153 34 chr12 142238334 142238452 -2044037 + MIR SINE MIR 13 144 -118 341 322 14 14 chr12 142238948 142239094 -2043395 + (TG)n Simple_repeat Simple_repeat 1 146 0 3793 160 29 2 chr12 142239692 142240310 -2042179 + MER41B LTR ERV1 1 635 0 181 311 0 0 chr12 142240358 142240403 -2042086 - L2 LINE L2 -9 3263 3219 191 267 0 0 chr12 142240407 142240452 -2042037 - L2 LINE L2 -9 3263 3219 531 249 84 77 chr12 142240861 142241134 -2041355 - ORSL DNA AcHobo 0 275 1 358 333 41 0 chr12 142241538 142241685 -2040804 + MIR SINE MIR 37 189 -73 324 313 17 26 chr12 142241948 142242063 -2040426 + MIR SINE MIR 17 130 -132 2123 141 20 22 chr12 142242526 142242999 -2039490 + MER4A LTR ERV1 2 433 -231 4030 137 45 50 chr12 142242999 142243694 -2038795 + LTR8 LTR ERV1 1 691 0 2123 141 20 22 chr12 142243694 142243923 -2038566 + MER4A LTR ERV1 433 661 -3 628 264 56 0 chr12 142244289 142244467 -2038022 - MER5A DNA MER1_type 0 189 2 462 331 51 6 chr12 142246448 142246626 -2035863 + MIR SINE MIR 77 262 0 689 186 0 0 chr12 142246890 142247008 -2035481 - L1PA15 LINE L1 -7 6158 6041 351 198 206 103 chr12 142248021 142248274 -2034215 + MLT1K LTR MaLR 306 584 -4 210 250 0 0 chr12 142250352 142250396 -2032093 + MIR SINE MIR 117 160 -102 195 182 0 0 chr12 142251082 142251115 -2031374 + L2 LINE L2 3239 3271 -1 291 309 141 38 chr12 142251639 142251959 -2030530 + HAL1 LINE L1 1731 2083 -424 433 359 52 15 chr12 142251962 142252291 -2030198 - L2 LINE L2 -894 2420 2080 226 274 159 25 chr12 142252331 142252488 -2030001 - L2 LINE L2 -1358 1956 1779 195 364 35 0 chr12 142252664 142252837 -2029652 + L2 LINE L2 2843 3021 -292 216 262 0 16 chr12 142254331 142254392 -2028097 + CT-rich Low_complexity Low_complexity 4 63 0 258 385 52 25 chr12 142254395 142254837 -2027652 - L1MC4a LINE L1 -1861 5947 5494 603 269 51 23 chr12 142255529 142255745 -2026744 - MIR SINE MIR -1 261 40 348 24 0 0 chr12 142256353 142256394 -2026095 + (CA)n Simple_repeat Simple_repeat 1 41 0 281 276 177 6 chr12 142256400 142256581 -2025908 + Charlie8 DNA MER1_type 75 286 -2131 28 0 0 0 chr12 142256695 142256723 -2025766 + AT_rich Low_complexity Low_complexity 1 28 0 2333 105 0 0 chr12 142256753 142257058 -2025431 - AluSx SINE Alu -7 305 1 610 250 33 11 chr12 142258587 142258767 -2023722 - L1MB7 LINE L1 -19 6165 5982 246 226 20 49 chr12 142258809 142258911 -2023578 + C-rich Low_complexity Low_complexity 3 101 0 310 158 5 163 chr12 142258922 142259131 -2023358 + C-rich Low_complexity Low_complexity 3 178 0 1075 259 71 68 chr12 142260110 142260735 -2021754 + MLT1K LTR MaLR 30 588 0 509 294 82 15 chr12 142261518 142261844 -2020645 + L2 LINE L2 2658 3024 -248 1823 233 64 31 chr12 142262369 142262885 -2019604 + MER68 LTR ERV1 28 560 -2 258 283 11 11 chr12 142263036 142263128 -2019361 + LTR33 LTR ERVL 428 519 -2 2228 136 0 0 chr12 142263753 142264055 -2018434 - AluSx SINE Alu -10 302 1 1032 256 219 10 chr12 142264254 142264665 -2017824 + MLT1D LTR MaLR 8 504 -1 255 222 125 34 chr12 142264781 142264957 -2017532 + LTR33 LTR ERVL 329 520 -1 2304 104 7 0 chr12 142265612 142265909 -2016580 - AluSx SINE Alu -13 299 1 2525 55 0 0 chr12 142268171 142268461 -2014028 - AluY SINE Alu -21 290 1 3196 169 29 19 chr12 142268483 142268988 -2013501 - L1MB3 LINE L1 -7 6176 5661 2268 114 0 0 chr12 142268988 142269277 -2013212 - AluSx SINE Alu -17 295 7 3196 169 29 19 chr12 142269277 142269457 -2013032 - L1MB3 LINE L1 -522 5661 5484 339 305 115 53 chr12 142269612 142270048 -2012441 - L2 LINE L2 -6 3307 2845 257 265 129 27 chr12 142270077 142270224 -2012265 - L2 LINE L2 -559 2755 2594 2417 137 19 44 chr12 142270292 142270723 -2011766 + MSTC LTR MaLR 3 422 -6 189 289 26 53 chr12 142270814 142270928 -2011561 - L2 LINE L2 -919 2395 2285 203 368 70 20 chr12 142271256 142271457 -2011032 + MIR SINE MIR 4 214 -48 324 307 133 6 chr12 142273026 142273192 -2009297 + MIR SINE MIR 11 197 -65 2128 78 11 35 chr12 142273699 142273981 -2008508 + AluSq SINE Alu 31 305 -8 234 236 14 56 chr12 142275926 142275998 -2006491 - L1MEd LINE L1 -5479 640 572 1724 160 7 17 chr12 142276046 142276340 -2006149 + AluSx SINE Alu 1 291 -21 21 81 0 0 chr12 142276620 142276657 -2005832 + AT_rich Low_complexity Low_complexity 1 37 0 1035 259 137 5 chr12 142327941 142328350 -1954139 - MLT1C LTR MaLR -4 463 1 505 256 134 0 chr12 142328867 142329039 -1953450 + MLT1K LTR MaLR 379 573 -15 328 253 55 0 chr12 142329658 142329749 -1952740 + L1MA9 LINE L1 6179 6274 -38 266 237 0 75 chr12 142329770 142329863 -1952626 + Charlie8 DNA MER1_type 379 464 -1953 956 254 66 58 chr12 142330028 142330650 -1951839 + MER92B LTR ERV1 1 627 -9 249 108 0 0 chr12 142333399 142333436 -1949053 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 334 313 8 30 chr12 142333823 142333957 -1948532 - MIR SINE MIR -9 253 123 489 320 62 74 chr12 142334354 142334622 -1947867 - L1M4 LINE L1 -2919 3227 2964 1003 233 9 9 chr12 142334622 142334845 -1947644 + MER58A DNA MER1_type 1 223 -1 489 320 62 74 chr12 142334845 142335010 -1947479 - L1M4 LINE L1 -3182 2964 2799 2219 166 57 0 chr12 142335081 142335484 -1947005 - MSTB LTR MaLR 0 426 1 4333 155 54 14 chr12 142335484 142336282 -1946207 - MSTB-int LTR MaLR 0 1651 822 883 98 15 15 chr12 142337551 142337684 -1944805 + FLAM_C SINE Alu 1 133 0 223 354 48 41 chr12 142338781 142338928 -1943561 - L2 LINE L2 -1 3312 3165 3041 164 30 2 chr12 142339466 142339998 -1942491 - MER41C LTR ERV1 -7 547 1 2823 127 43 29 chr12 142339992 142340503 -1941986 - MER4E LTR ERV1 -2 777 260 * 3608 80 14 0 chr12 142340499 142340988 -1941501 - MER41A LTR ERV1 -58 496 1 670 266 91 41 chr12 142341036 142341378 -1941111 - MLT1C LTR MaLR -39 428 70 440 236 189 5 chr12 142341979 142342191 -1940298 - MLT1J2 LTR MaLR -4 446 196 2073 141 3 7 chr12 142342455 142342761 -1939728 + AluSx SINE Alu 1 305 -7 634 275 47 0 chr12 142343821 142343992 -1938497 - MIR SINE MIR -75 187 9 2247 110 0 0 chr12 142344166 142344484 -1938005 - AluSq SINE Alu 0 318 1 429 301 110 36 chr12 142344555 142344774 -1937715 - MIR SINE MIR -7 255 21 452 295 100 32 chr12 142345572 142345941 -1936548 - L2 LINE L2 -1 3312 2919 408 187 27 0 chr12 142346916 142346991 -1935498 - MER63 DNA MER1_type -306 756 680 1414 110 18 23 chr12 142346991 142347210 -1935279 - AluSg/x SINE Alu -14 298 81 240 278 56 24 chr12 142348012 142348138 -1934351 + MIR SINE MIR 123 252 -10 948 142 0 8 chr12 142348149 142348283 -1934206 - AluSq/x SINE Alu -179 133 1 225 0 0 0 chr12 142348939 142348964 -1933525 + (T)n Simple_repeat Simple_repeat 1 25 0 606 239 60 0 chr12 142349252 142349419 -1933070 - LTR33 LTR ERVL -5 516 340 1357 227 4 1 chr12 142349497 142349834 -1932655 - LTR19A LTR ERV1 -85 401 139 1526 141 58 0 chr12 142349835 142350111 -1932378 - LTR19A LTR ERV1 -194 292 1 1143 148 11 76 chr12 142350111 142350382 -1932107 - MER4A LTR ERV1 -92 572 261 558 134 21 10 chr12 142350382 142350479 -1932010 - MER4A LTR ERV1 -566 98 1 227 271 24 12 chr12 142350482 142350567 -1931922 - L1ME LINE L1 -509 5657 5572 1249 253 64 10 chr12 142350586 142351291 -1931198 - L1ME LINE L1 -570 5596 4849 596 179 77 0 chr12 142351298 142351415 -1931074 + FLAM_C SINE Alu 7 132 -11 2858 248 37 15 chr12 142351418 142351556 -1930933 - L1ME LINE L1 -1289 4857 4724 2397 88 3 0 chr12 142351556 142351851 -1930638 - AluY SINE Alu -15 296 1 2858 248 37 15 chr12 142351851 142352658 -1929831 - L1ME LINE L1 -1422 4724 3891 335 217 113 0 chr12 142352758 142352873 -1929616 + L1MB5 LINE L1 6050 6177 -3 749 172 8 0 chr12 142352892 142353026 -1929463 - FLAM_C SINE Alu 0 143 9 615 261 33 22 chr12 142353379 142353563 -1928926 - MER20 DNA MER1_type 0 219 34 494 324 17 11 chr12 142353901 142354077 -1928412 - L1MC/D LINE L1 -2126 5682 5506 1457 283 20 34 chr12 142355112 142355376 -1927113 - L1MB5 LINE L1 0 6174 5919 2387 90 0 3 chr12 142355376 142355675 -1926814 + AluSx SINE Alu 1 298 -14 1457 283 20 34 chr12 142355675 142355916 -1926573 - L1MB5 LINE L1 -255 5919 5676 272 250 11 34 chr12 142356320 142356408 -1926081 - L2 LINE L2 -584 2730 2645 2208 122 0 0 chr12 142356545 142356848 -1925641 - AluSx SINE Alu -9 303 1 763 212 12 6 chr12 142356979 142357144 -1925345 - MER20 DNA MER1_type -52 167 2 722 301 79 11 chr12 142357171 142357540 -1924949 - L1ME1 LINE L1 -5 6161 5768 2337 91 0 3 chr12 142357664 142357961 -1924528 - AluSc SINE Alu -13 296 1 724 226 50 45 chr12 142357978 142358091 -1924398 - L1ME1 LINE L1 -394 5772 5656 908 251 41 44 chr12 142358091 142358457 -1924032 - MLT1A1 LTR MaLR 0 365 1 724 226 50 45 chr12 142358457 142358564 -1923925 - L1ME1 LINE L1 -510 5656 5551 1515 250 33 21 chr12 142359277 142359701 -1922788 + L1MB5 LINE L1 5745 6173 -1 1652 133 103 133 chr12 142359900 142360164 -1922325 - MSTA LTR MaLR 0 428 181 2252 93 3 39 chr12 142360164 142360475 -1922014 - AluSx SINE Alu -12 300 1 1652 133 103 133 chr12 142360475 142360645 -1921844 - MSTA LTR MaLR -247 181 7 250 290 76 21 chr12 142361028 142361173 -1921316 + MLT1K LTR MaLR 434 586 -2 426 233 0 0 chr12 142361366 142361624 -1920865 + CT-rich Low_complexity Low_complexity 1 258 0 3954 168 39 17 chr12 142362159 142362315 -1920174 + LTR39 LTR ERV1 1 152 -631 1587 132 9 0 chr12 142362315 142362542 -1919947 + AluSg/x SINE Alu 76 304 -6 3954 168 39 17 chr12 142362542 142363151 -1919338 + LTR39 LTR ERV1 152 783 0 2477 49 3 0 chr12 142363816 142364104 -1918385 - AluSp SINE Alu -15 298 10 239 220 170 30 chr12 142364477 142364577 -1917912 - MLT1J2 LTR MaLR -131 319 206 256 155 52 0 chr12 142364609 142364667 -1917822 - MLT1J LTR MaLR -344 167 107 856 202 32 28 chr12 142367387 142367605 -1914884 + MER20 DNA MER1_type 1 219 0 222 349 122 4 chr12 142367644 142367873 -1914616 - L2 LINE L2 -44 3269 3014 282 220 0 0 chr12 142367993 142368043 -1914446 - MLT1L LTR MaLR -218 397 348 1963 138 48 0 chr12 142368131 142368421 -1914068 + AluSx SINE Alu 7 310 -2 218 333 12 0 chr12 142368654 142368735 -1913754 - L2 LINE L2 -313 3000 2919 920 241 132 53 chr12 142368876 142369254 -1913235 - MLT1D LTR MaLR -52 453 46 2161 121 13 29 chr12 142369453 142369834 -1912655 - THE1C LTR MaLR 0 375 1 2843 128 113 6 chr12 142370080 142370370 -1912119 + LTR18B LTR ERVL 1 258 -356 231 88 0 0 chr12 142370370 142370404 -1912085 + (GCATG)n Simple_repeat Simple_repeat 3 36 0 2843 128 113 6 chr12 142370404 142370644 -1911845 + LTR18B LTR ERVL 258 588 -26 400 320 61 28 chr12 142371086 142371333 -1911156 + MIR SINE MIR 8 262 0 228 326 11 11 chr12 142372083 142372178 -1910311 - L2 LINE L2 -5 3308 3214 232 153 68 0 chr12 142372341 142372400 -1910089 - Alu SINE Alu 0 302 240 * 380 113 0 0 chr12 142372392 142372445 -1910044 - Alu SINE Alu -249 53 1 2335 86 21 3 chr12 142372451 142372742 -1909747 - AluSq SINE Alu -17 296 1 2429 171 85 31 chr12 142372756 142373126 -1909363 - L1MC2 LINE L1 -30 6314 5903 1723 158 81 0 chr12 142373126 142373436 -1909053 - MER1B DNA MER1_type 0 337 3 2429 171 85 31 chr12 142373436 142373616 -1908873 - L1MC2 LINE L1 -441 5903 5734 266 313 27 68 chr12 142374443 142374590 -1907899 - L2 LINE L2 0 3313 3173 555 317 27 27 chr12 142374911 142375135 -1907354 - MLT1K LTR MaLR 0 588 365 406 346 6 6 chr12 142375262 142375424 -1907065 - MIR SINE MIR -41 221 60 214 356 84 55 chr12 142375448 142375830 -1906659 - L2 LINE L2 -73 3199 2807 504 298 99 0 chr12 142376264 142376435 -1906054 + MLT1I LTR MaLR 222 409 0 243 258 167 33 chr12 142376467 142376587 -1905902 - L2 LINE L2 0 3272 3137 1770 178 0 23 chr12 142376948 142377251 -1905238 + AluJb SINE Alu 1 296 -16 245 245 104 0 chr12 142377808 142377914 -1904575 + MER113 DNA MER1_type? 38 154 -367 807 169 0 8 chr12 142378016 142378146 -1904343 - FLAM_C SINE Alu -14 129 1 1129 90 0 0 chr12 142378770 142378925 -1903564 - L1PA8 LINE L1 -9 6163 6009 1412 263 52 9 chr12 142379150 142379588 -1902901 + LTR16C LTR ERVL 35 491 0 2171 117 0 0 chr12 142380253 142380535 -1901954 - AluSg SINE Alu -23 287 6 651 189 69 6 chr12 142380559 142380718 -1901771 - L1MA4 LINE L1 -11 6289 6121 310 257 0 0 chr12 142381813 142381883 -1900606 + (CCA)n Simple_repeat Simple_repeat 3 72 0 364 220 0 34 chr12 142381886 142382063 -1900426 + (CACCAT)n Simple_repeat Simple_repeat 4 174 0 190 246 0 33 chr12 142382075 142382197 -1900292 + (CACCAT)n Simple_repeat Simple_repeat 4 121 0 192 233 0 0 chr12 142382289 142382362 -1900127 + (CCA)n Simple_repeat Simple_repeat 1 73 0 * 414 216 0 38 chr12 142382353 142382538 -1899951 + (CACCAT)n Simple_repeat Simple_repeat 3 180 0 189 277 0 0 chr12 142382591 142382703 -1899786 + (CCA)n Simple_repeat Simple_repeat 3 114 0 749 306 139 48 chr12 142382995 142383664 -1898825 + L2 LINE L2 2248 2977 -337 246 337 89 0 chr12 142383661 142383762 -1898727 + L2 LINE L2 3203 3312 -1 * 29 0 0 0 chr12 142384444 142384473 -1898016 + AT_rich Low_complexity Low_complexity 1 29 0 198 197 33 49 chr12 142384810 142384871 -1897618 - L2 LINE L2 0 3272 3213 358 307 96 64 chr12 142385007 142385352 -1897137 + HAL1 LINE L1 427 782 -1725 296 273 122 25 chr12 142386261 142386511 -1895978 + L1ME LINE L1 5355 5624 -546 4560 180 71 43 chr12 142386767 142387620 -1894869 + Tigger3b DNA MER2_type 1 828 -2200 428 35 17 0 chr12 142387620 142387678 -1894811 + (CTCA)n Simple_repeat Simple_repeat 4 62 0 4560 180 71 43 chr12 142387678 142387737 -1894752 + Tigger3b DNA MER2_type 828 884 -2144 2478 53 10 7 chr12 142387737 142388041 -1894448 - AluY SINE Alu -6 305 1 4560 180 71 43 chr12 142388041 142388324 -1894165 + Tigger3b DNA MER2_type 884 1231 0 500 307 67 29 chr12 142388473 142388930 -1893559 + L1MC5 LINE L1 7504 8041 -1 2093 128 6 31 chr12 142388940 142389260 -1893229 + AluSx SINE Alu 1 312 0 22 0 0 0 chr12 142389329 142389351 -1893138 + AT_rich Low_complexity Low_complexity 1 22 0 2332 90 3 0 chr12 142390000 142390288 -1892201 - AluSg SINE Alu -21 289 1 378 296 71 32 chr12 142391561 142391814 -1890675 - L1MDb LINE L1 -5763 646 384 1779 207 49 2 chr12 142391841 142392252 -1890237 - L1MA8 LINE L1 -26 6265 5836 950 153 33 143 chr12 142392248 142392548 -1889941 + L1MA8 LINE L1 5571 5837 -463 * 525 250 158 0 chr12 142392550 142392702 -1889787 - L1MDb LINE L1 -6038 371 196 1705 264 48 33 chr12 142392710 142393251 -1889238 - MLT2B3 LTR ERVL -4 550 2 273 294 196 6 chr12 142393380 142393543 -1888946 - L1MDb LINE L1 -6208 201 8 2785 13 10 0 chr12 142393710 142394015 -1888474 - AluY SINE Alu -3 308 1 379 291 23 41 chr12 142396482 142396654 -1885835 - LTR33 LTR ERVL -352 169 1 2211 117 3 0 chr12 142396688 142396987 -1885502 + AluSg SINE Alu 1 300 -10 4535 168 4 3 chr12 142398004 142398777 -1883712 - MSTB-int LTR MaLR -877 774 1 2559 150 12 0 chr12 142398779 142399198 -1883291 - MSTB LTR MaLR -2 424 1 241 287 11 11 chr12 142399649 142399743 -1882746 - L1M4 LINE L1 -3372 2774 2681 283 282 0 0 chr12 142399777 142399848 -1882641 + (CA)n Simple_repeat Simple_repeat 1 71 0 742 242 124 22 chr12 142400540 142400813 -1881676 - MLT1C LTR MaLR 0 467 167 1031 161 11 22 chr12 142400851 142401031 -1881458 + AluJb SINE Alu 120 297 -15 1451 198 22 15 chr12 142401032 142401305 -1881184 - AluJo SINE Alu -37 275 1 798 134 78 45 chr12 142401305 142401484 -1881005 - MLT1C LTR MaLR -282 185 1 207 222 37 0 chr12 142403044 142403125 -1879364 + CT-rich Low_complexity Low_complexity 2 85 0 781 200 29 6 chr12 142403221 142403396 -1879093 - Charlie5 DNA MER1_type 0 2624 2446 2459 64 7 0 chr12 142403398 142403693 -1878796 + AluY SINE Alu 1 297 -14 392 100 50 50 chr12 142403697 142403797 -1878692 - Charlie5 DNA MER1_type -106 2506 2407 2229 118 3 3 chr12 142403799 142404096 -1878393 + AluSx SINE Alu 1 297 -15 729 228 23 0 chr12 142404118 142404289 -1878200 - AluJb SINE Alu -14 298 124 865 106 0 0 chr12 142405043 142405166 -1877323 + FLAM_C SINE Alu 1 123 -10 503 301 61 35 chr12 142405223 142405452 -1877037 + MLT1K LTR MaLR 2 236 -352 257 164 0 36 chr12 142405793 142405848 -1876641 + MLT1K LTR MaLR 508 560 -28 390 207 31 181 chr12 142406420 142406488 -1876001 + MER5B DNA MER1_type 16 93 -85 2244 106 0 0 chr12 142406488 142406770 -1875719 + AluSc SINE Alu 9 290 -19 1925 171 0 0 chr12 142406778 142407070 -1875419 + AluJo SINE Alu 1 292 -20 390 207 31 181 chr12 142407070 142407185 -1875304 + MER5B DNA MER1_type 101 168 -10 958 280 125 42 chr12 142407621 142408125 -1874364 + L1MC4 LINE L1 5325 5870 -1938 541 279 49 0 chr12 142408276 142408469 -1874020 + L1MC4 LINE L1 6449 6668 -1327 518 214 0 6 chr12 142408435 142408595 -1873894 + (CA)n Simple_repeat Simple_repeat 1 158 0 * 2330 274 76 56 chr12 142408601 142409360 -1873129 + L1MC4 LINE L1 6705 7496 -546 1907 113 3 70 chr12 142409360 142409662 -1872827 + AluSx SINE Alu 15 296 -16 2330 274 76 56 chr12 142409662 142410060 -1872429 + L1MC4 LINE L1 7496 7885 -157 195 313 16 0 chr12 142410687 142410751 -1871738 + L2 LINE L2 3203 3267 -5 847 177 15 14 chr12 142410751 142411030 -1871459 + GA-rich Low_complexity Low_complexity 1 279 0 596 175 0 15 chr12 142411042 142411179 -1871310 + GA-rich Low_complexity Low_complexity 4 138 0 200 293 13 0 chr12 142411301 142411376 -1871113 + GA-rich Low_complexity Low_complexity 2 77 0 710 217 51 46 chr12 142411731 142411948 -1870541 + MER20 DNA MER1_type 2 219 0 1332 280 112 32 chr12 142411976 142412822 -1869667 - HAL1 LINE L1 -296 2211 1298 755 173 7 27 chr12 142413128 142413549 -1868940 + GA-rich Low_complexity Low_complexity 1 412 0 352 258 59 75 chr12 142413606 142413792 -1868697 - LTR33 LTR ERVL -13 508 326 989 257 95 93 chr12 142413906 142414494 -1867995 + MER21B LTR ERV1 127 715 -148 218 197 45 0 chr12 142417306 142417372 -1865117 + (TA)n Simple_repeat Simple_repeat 2 70 0 315 278 0 52 chr12 142417498 142417595 -1864894 - L1MC4 LINE L1 -1337 6705 6614 * 333 255 9 47 chr12 142417521 142417627 -1864862 + L1MC4 LINE L1 6600 6701 -1341 223 132 57 19 chr12 142417634 142417687 -1864802 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 318 268 0 72 chr12 142417690 142417787 -1864702 + L1MC4 LINE L1 6614 6703 -1339 * 327 238 71 12 chr12 142417704 142417788 -1864701 - L1MC4 LINE L1 -1339 6703 6615 2055 104 0 21 chr12 142417792 142418081 -1864408 - AluSx SINE Alu -23 289 7 302 253 27 40 chr12 142418710 142418860 -1863629 + CT-rich Low_complexity Low_complexity 3 150 0 375 284 78 0 chr12 142419574 142419690 -1862799 + MER112 DNA MER1_type 132 256 -4 2024 107 59 0 chr12 142419786 142420058 -1862431 + AluSq SINE Alu 1 288 -25 1150 268 94 13 chr12 142420388 142420836 -1861653 - MLT1E2 LTR MaLR 0 626 143 460 275 134 37 chr12 142420981 142421250 -1861239 + MLT1K LTR MaLR 288 582 -6 1714 185 3 7 chr12 142422006 142422303 -1860186 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr12 142423059 142423080 -1859409 + AT_rich Low_complexity Low_complexity 1 21 0 442 172 21 41 chr12 142423323 142423468 -1859021 + (GAATG)n Simple_repeat Simple_repeat 2 143 0 * 618 151 0 0 chr12 142423434 142423540 -1858949 + (TAGGG)n Simple_repeat Simple_repeat 3 108 0 206 293 0 0 chr12 142423607 142423665 -1858824 - MIR SINE MIR -86 176 119 189 94 0 0 chr12 142423857 142423889 -1858600 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 729 249 44 98 chr12 142424233 142424690 -1857799 + MLT1J LTR MaLR 29 460 -51 308 331 190 11 chr12 142424953 142425222 -1857267 + L2 LINE L2 2660 2976 -338 195 365 0 0 chr12 142425468 142425531 -1856958 + L2 LINE L2 3244 3306 -7 464 215 0 0 chr12 142426079 142426172 -1856317 + AluJ/FLAM SINE Alu 2 94 -218 936 337 51 17 chr12 142426217 142426686 -1855803 - L2 LINE L2 -542 2772 2288 674 247 72 77 chr12 142426955 142427397 -1855092 + MER113 DNA MER1_type? 6 445 -76 267 320 0 33 chr12 142427466 142427588 -1854901 - L2 LINE L2 -299 2973 2856 1752 147 14 24 chr12 142427857 142428149 -1854340 + AluJo SINE Alu 1 289 -23 1033 168 0 17 chr12 142428287 142428460 -1854029 + FRAM SINE Alu 1 164 -12 2181 112 3 63 chr12 142429091 142429226 -1853263 + AluSx SINE Alu 1 143 -169 7315 29 3 0 chr12 142429226 142430356 -1852133 + L1PA4 LINE L1 5020 6152 -3 2181 112 3 63 chr12 142430356 142430551 -1851938 + AluSx SINE Alu 143 311 -1 1006 219 106 60 chr12 142430980 142431402 -1851087 + MLT1C LTR MaLR 6 467 0 2279 127 3 0 chr12 142432851 142433159 -1849330 + AluSx SINE Alu 1 309 -3 518 43 14 0 chr12 142433159 142433228 -1849261 + (GGAA)n Simple_repeat Simple_repeat 2 71 0 352 311 0 74 chr12 142433349 142433497 -1848992 + MIR SINE MIR 19 155 -107 189 0 0 0 chr12 142434430 142434451 -1848038 + (GA)n Simple_repeat Simple_repeat 2 22 0 2159 119 3 0 chr12 142434906 142435218 -1847271 + AluSx SINE Alu 1 312 0 305 349 0 0 chr12 142435431 142435540 -1846949 + MIR SINE MIR 51 159 -103 419 253 89 25 chr12 142435544 142435702 -1846787 - MLT1C LTR MaLR 0 467 300 312 280 11 11 chr12 142436725 142436818 -1845671 - MIR SINE MIR -2 260 168 518 298 96 28 chr12 142436850 142437068 -1845421 - MIR SINE MIR -3 259 27 315 325 31 46 chr12 142437180 142437374 -1845115 + MIR SINE MIR 2 192 -70 399 310 94 26 chr12 142438046 142438458 -1844031 - L2 LINE L2 -254 3059 2488 195 42 0 0 chr12 142438530 142438554 -1843935 + (GA)n Simple_repeat Simple_repeat 1 24 0 1720 216 47 7 chr12 142438608 142439011 -1843478 + L1MB7 LINE L1 5755 6173 -11 1999 144 7 0 chr12 142439016 142439307 -1843182 + AluJo SINE Alu 1 293 -19 314 303 35 35 chr12 142439509 142439651 -1842838 + MIR SINE MIR 38 179 -83 193 263 18 0 chr12 142439908 142439965 -1842524 - L2 LINE L2 -15 3257 3200 399 145 0 0 chr12 142441024 142441093 -1841396 + (CA)n Simple_repeat Simple_repeat 2 70 0 263 266 149 11 chr12 142441101 142441195 -1841294 + L2 LINE L2 3203 3309 -4 2275 127 0 0 chr12 142441569 142441868 -1840621 + AluSx SINE Alu 1 299 -13 234 308 50 56 chr12 142441951 142442149 -1840340 - L1M4 LINE L1 -2357 3789 3593 4857 216 53 7 chr12 142442375 142443536 -1838953 - Tigger3b DNA MER2_type 0 1231 17 186 254 0 0 chr12 142443630 142443697 -1838792 + GA-rich Low_complexity Low_complexity 2 68 0 276 265 71 0 chr12 142444018 142444116 -1838373 + MER5A DNA MER1_type 1 105 -84 439 95 27 0 chr12 142446405 142446479 -1836010 + (GGGA)n Simple_repeat Simple_repeat 2 77 0 267 103 0 0 chr12 142446615 142446654 -1835835 + (GA)n Simple_repeat Simple_repeat 1 39 0 282 179 0 0 chr12 142446705 142446761 -1835728 + (CA)n Simple_repeat Simple_repeat 2 57 0 2554 179 14 4 chr12 142447920 142448412 -1834077 + L1MB5 LINE L1 5678 6174 0 2087 164 0 0 chr12 142449008 142449320 -1833169 + AluJb SINE Alu 1 312 0 2202 134 3 3 chr12 142450272 142450579 -1831910 + AluJb SINE Alu 1 307 -5 1061 334 81 24 chr12 142450675 142451291 -1831198 + L1M4 LINE L1 4296 4946 -1200 232 296 15 15 chr12 142451423 142451555 -1830934 + L1M4 LINE L1 5115 5246 -900 1481 177 44 48 chr12 142451562 142451801 -1830688 - MER69 DNA AcHobo -5 2521 2283 538 175 8 8 chr12 142451801 142451921 -1830568 - L1MA4 LINE L1 -7 6293 6174 1481 177 44 48 chr12 142451921 142452093 -1830396 - MER69 DNA AcHobo -243 2283 2112 17840 159 12 11 chr12 142452093 142453520 -1828969 + L1PA14 LINE L1 1726 3150 -3011 186 43 0 0 chr12 142453520 142453543 -1828946 + (CA)n Simple_repeat Simple_repeat 2 24 0 17840 159 12 11 chr12 142453543 142454603 -1827886 + L1PA14 LINE L1 3150 4208 -1953 2145 106 10 7 chr12 142454603 142454895 -1827594 - AluSg SINE Alu -17 293 1 17840 159 12 11 chr12 142454895 142456840 -1825649 + L1PA14 LINE L1 4208 6161 0 1725 293 114 6 chr12 142456881 142457601 -1824888 - MER69 DNA AcHobo -1727 799 2 341 151 0 23 chr12 142457626 142457712 -1824777 + L1M4 LINE L1 5265 5348 -798 219 259 0 0 chr12 142458302 142458441 -1824048 + (CA)n Simple_repeat Simple_repeat 1 139 0 285 271 0 0 chr12 142458532 142458709 -1823780 + (CA)n Simple_repeat Simple_repeat 1 177 0 279 257 0 0 chr12 142458788 142458959 -1823530 + (CA)n Simple_repeat Simple_repeat 1 171 0 189 229 0 0 chr12 142459407 142459455 -1823034 + GA-rich Low_complexity Low_complexity 1 48 0 210 133 44 22 chr12 142459538 142459583 -1822906 + C-rich Low_complexity Low_complexity 3 48 0 429 330 105 12 chr12 142459717 142460278 -1822211 - L2 LINE L2 -2 3311 2685 271 296 51 0 chr12 142461124 142461222 -1821267 - Charlie8 DNA MER1_type -1996 421 319 1948 203 35 0 chr12 142461291 142461661 -1820828 - MLT1B LTR MaLR 0 390 8 433 328 87 11 chr12 142461724 142462011 -1820478 - LTR33A LTR ERVL -214 309 1 1644 255 16 14 chr12 142462870 142463293 -1819196 + L1MB1 LINE L1 5704 6127 -41 2056 122 22 53 chr12 142463293 142463612 -1818877 + AluSx SINE Alu 1 309 -3 750 265 28 11 chr12 142463612 142463793 -1818696 - L1M4 LINE L1 -1944 4202 4019 2741 257 89 36 chr12 142463917 142463948 -1818541 - L1MCb LINE L1 -4008 2556 2528 2440 59 28 0 chr12 142463948 142464235 -1818254 + AluSc SINE Alu 1 295 -14 2741 257 89 36 chr12 142464235 142464768 -1817721 - L1MCb LINE L1 -4036 2528 2025 3629 168 40 15 chr12 142464768 142465495 -1816994 - L1PB3 LINE L1 0 6154 5410 2741 257 89 36 chr12 142465495 142466198 -1816291 - L1MCb LINE L1 -4539 2025 1361 1437 152 39 26 chr12 142466198 142466507 -1815982 - L1MA9 LINE L1 0 6312 6000 2741 257 89 36 chr12 142466507 142467555 -1814934 - L1MCb LINE L1 -5203 1361 1 238 343 45 52 chr12 142467808 142468094 -1814395 - L2 LINE L2 0 3272 2989 2844 47 16 34 chr12 142468357 142468744 -1813745 - L1PA7 LINE L1 -11 6143 5764 1039 221 109 74 chr12 142468767 142469117 -1813372 + MLT1J LTR MaLR 48 419 -92 1759 163 0 0 chr12 142469117 142469381 -1813108 - AluSq SINE Alu -5 308 45 1039 221 109 74 chr12 142469381 142469478 -1813011 + MLT1J LTR MaLR 419 511 0 533 267 67 1 chr12 142469601 142469870 -1812619 + Charlie8 DNA MER1_type 45 1415 -1002 2082 111 90 0 chr12 142471256 142471590 -1810899 + THE1B LTR MaLR 1 364 0 980 259 0 0 chr12 142471836 142472056 -1810433 + MER58A DNA MER1_type 5 224 0 2001 243 49 35 chr12 142472215 142472848 -1809641 + L1MC4 LINE L1 7247 7888 -154 656 101 65 0 chr12 142472932 142473100 -1809389 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 321 216 52 9 chr12 142473112 142473228 -1809261 + L1MC4 LINE L1 7922 8042 0 392 242 55 115 chr12 142473618 142473947 -1808542 + MLT1L LTR MaLR 1 391 -194 366 283 30 10 chr12 142475969 142476068 -1806421 - L1MC4 LINE L1 -1339 6703 6603 31 108 0 0 chr12 142476128 142476257 -1806232 + AT_rich Low_complexity Low_complexity 1 129 0 294 335 96 12 chr12 142476328 142476495 -1805994 + MIR SINE MIR 20 200 -62 1396 167 130 3 chr12 142476534 142476833 -1805656 - MER1B DNA MER1_type 0 337 1 799 267 53 40 chr12 142476922 142477222 -1805267 + MLT1I LTR MaLR 100 403 -6 499 270 94 19 chr12 142477268 142477427 -1805062 + MIR SINE MIR 85 255 -7 2053 98 54 0 chr12 142477505 142477782 -1804707 + AluSc SINE Alu 1 292 -17 243 371 40 11 chr12 142478939 142479114 -1803375 - L1ME LINE L1 -410 5711 5532 488 203 4 48 chr12 142479236 142479377 -1803112 + MIR SINE MIR 35 143 -65 1471 164 21 21 chr12 142479377 142479657 -1802832 - MER4E LTR ERV1 0 766 487 493 133 89 0 chr12 142479657 142479747 -1802742 + MER4A LTR ERV1 1 98 -566 1600 128 157 80 chr12 142479747 142480122 -1802367 + MER4A LTR ERV1 261 664 0 2176 105 0 43 chr12 142480122 142480326 -1802163 - MER4B LTR ERV1 -273 337 153 2072 109 35 3 chr12 142480326 142480610 -1801879 + AluSx SINE Alu 1 293 -19 2176 105 0 43 chr12 142480610 142480756 -1801733 - MER4B LTR ERV1 -457 153 2 233 246 15 0 chr12 142480757 142480822 -1801667 + MIR SINE MIR 167 232 -30 1737 142 8 46 chr12 142480861 142481220 -1801269 - MER4A LTR ERV1 0 664 261 247 91 45 23 chr12 142481220 142481264 -1801225 - MER4A LTR ERV1 -566 98 54 185 279 82 55 chr12 142481921 142482104 -1800385 + L2 LINE L2 2224 2411 -903 2353 83 3 0 chr12 142482318 142482629 -1799860 - AluSx SINE Alu 0 312 1 1720 99 0 0 chr12 142483347 142483570 -1798919 - AluSg/x SINE Alu -2 310 88 520 156 41 25 chr12 142483574 142483696 -1798793 - L1MA4 LINE L1 -1 6299 6176 1630 306 50 9 chr12 142483721 142484358 -1798131 - L1ME1 LINE L1 -5 6161 5499 259 321 4 37 chr12 142484492 142484917 -1797572 + GA-rich Low_complexity Low_complexity 1 411 0 356 280 131 9 chr12 142484928 142485142 -1797347 - LTR50 LTR ERVL -555 240 1 401 344 32 13 chr12 142485249 142485403 -1797086 - MIR SINE MIR -21 241 85 342 193 11 45 chr12 142485405 142485493 -1796996 + MER96 DNA MER1_type? 1 85 -90 302 268 0 0 chr12 142485534 142485616 -1796873 - MIR SINE MIR -171 91 10 2218 88 0 46 chr12 142485895 142486202 -1796287 + AluY SINE Alu 1 293 -18 183 100 0 0 chr12 142486757 142486787 -1795702 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 2391 110 0 0 chr12 142486792 142487101 -1795388 - AluSc SINE Alu 0 309 1 189 329 49 0 chr12 142487370 142487452 -1795037 - MIR3 SINE MIR -14 194 109 990 105 33 0 chr12 142487643 142487796 -1794693 + MSTB LTR MaLR 1 158 -268 318 296 24 34 chr12 142488285 142488461 -1794028 + L1MC4 LINE L1 6525 6700 -1342 444 316 0 17 chr12 142488644 142488875 -1793614 + G-rich Low_complexity Low_complexity 1 227 0 204 258 15 61 chr12 142488941 142489073 -1793416 + (TATG)n Simple_repeat Simple_repeat 3 128 0 * 224 207 92 0 chr12 142488990 142489077 -1793412 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 657 250 15 13 chr12 142489079 142489405 -1793084 - MLT2C1 LTR ERVL -39 358 1 350 271 66 7 chr12 142490208 142490359 -1792130 + LTR33 LTR ERVL 306 465 -56 188 397 0 0 chr12 142490404 142490477 -1792012 + L2 LINE L2 2702 2774 -540 193 313 128 35 chr12 142491716 142491943 -1790546 - L2 LINE L2 -233 3080 2833 292 169 0 143 chr12 142492181 142492258 -1790231 + L1MB5 LINE L1 6096 6161 -13 2757 196 56 41 chr12 142492263 142492475 -1790014 + MER21A LTR ERV1 13 220 -711 2148 127 7 0 chr12 142492475 142492774 -1789715 + AluSx SINE Alu 1 301 -11 2757 196 56 41 chr12 142492774 142493358 -1789131 + MER21A LTR ERV1 220 887 -44 226 213 27 75 chr12 142493364 142493552 -1788937 + (ATG)n Simple_repeat Simple_repeat 1 179 0 335 212 33 54 chr12 142493616 142493800 -1788689 + (ATG)n Simple_repeat Simple_repeat 1 180 0 333 199 21 84 chr12 142493893 142494084 -1788405 + (ATG)n Simple_repeat Simple_repeat 1 179 0 * 397 192 42 36 chr12 142493948 142494176 -1788313 + (ATGGTG)n Simple_repeat Simple_repeat 1 229 0 259 236 58 23 chr12 142494238 142494412 -1788077 + (ATG)n Simple_repeat Simple_repeat 1 180 0 376 202 46 46 chr12 142494477 142494650 -1787839 + (ATGGTG)n Simple_repeat Simple_repeat 4 176 0 425 216 45 23 chr12 142494781 142494957 -1787532 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 202 219 52 21 chr12 142494934 142495030 -1787459 + (ATG)n Simple_repeat Simple_repeat 1 99 0 * 1313 233 88 0 chr12 142495166 142495483 -1787006 + L1MB5 LINE L1 5783 6127 -47 2325 246 57 33 chr12 142497229 142497632 -1784857 - L1MB8 LINE L1 -10 6168 5776 261 0 0 0 chr12 142497632 142497661 -1784828 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2185 57 60 0 chr12 142497661 142497926 -1784563 - AluY SINE Alu -30 281 1 2325 246 57 33 chr12 142497926 142498370 -1784119 - L1MB8 LINE L1 -402 5776 5295 2074 148 7 3 chr12 142498370 142498675 -1783814 - AluJb SINE Alu -6 306 1 2325 246 57 33 chr12 142498675 142498714 -1783775 - L1MB8 LINE L1 -883 5295 5258 1624 252 69 87 chr12 142498738 142499672 -1782817 - L1M4c LINE L1 -4539 2024 1075 1782 152 3 34 chr12 142499672 142499968 -1782521 - AluJb SINE Alu -15 297 11 1624 252 69 87 chr12 142499968 142499980 -1782509 - L1M4c LINE L1 -5488 1075 1064 723 203 0 0 chr12 142499980 142500103 -1782386 - FLAM_C SINE Alu -10 123 1 1624 252 69 87 chr12 142500103 142500386 -1782103 - L1M4c LINE L1 -5499 1064 655 289 278 62 40 chr12 142500932 142501108 -1781381 + LTR33 LTR ERVL 334 513 -8 1000 317 87 11 chr12 142501108 142501720 -1780769 - L2 LINE L2 -843 2471 1814 244 265 200 0 chr12 142502001 142502171 -1780318 - L2 LINE L2 -1566 1748 1545 252 283 43 0 chr12 142502562 142502654 -1779835 + MIR SINE MIR 158 253 -9 353 259 126 42 chr12 142502863 142503006 -1779483 - MIR SINE MIR -65 197 43 283 143 41 0 chr12 142503007 142503056 -1779433 + MER69 DNA AcHobo 2462 2512 -14 845 183 5 0 chr12 142503069 142503286 -1779203 + (CACCAT)n Simple_repeat Simple_repeat 1 218 0 213 233 0 0 chr12 142503288 142503331 -1779158 + (CAT)n Simple_repeat Simple_repeat 2 44 0 186 133 0 0 chr12 142503424 142503454 -1779035 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 721 266 81 86 chr12 142503989 142504546 -1777943 + MER41C LTR ERV1 1 554 0 1245 151 5 28 chr12 142504584 142504802 -1777687 + MER50 LTR ERV1 499 711 -23 2423 156 34 22 chr12 142504827 142505482 -1777007 + MER50-int LTR ERV1 1 735 -6470 2140 135 6 6 chr12 142505502 142505813 -1776676 + AluSx SINE Alu 1 311 -1 746 220 88 69 chr12 142506185 142506617 -1775872 + MER113 DNA MER1_type? 3 442 -79 22 35 0 0 chr12 142506622 142506651 -1775838 + AT_rich Low_complexity Low_complexity 1 29 0 524 210 31 117 chr12 142506838 142506975 -1775514 + LTR37B LTR ERV1 203 303 -165 965 218 127 53 chr12 142506975 142507315 -1775174 + MLT1A1 LTR MaLR 1 365 0 524 210 31 117 chr12 142507315 142507468 -1775021 + LTR37B LTR ERV1 303 468 0 326 311 76 0 chr12 142507517 142507649 -1774840 - MIR3 SINE MIR -48 160 19 344 283 142 50 chr12 142507928 142508387 -1774102 + L2 LINE L2 2806 3306 -7 1040 136 57 1 chr12 142508696 142508903 -1773586 - MSTB1 LTR MaLR 0 432 198 1358 74 0 0 chr12 142508918 142509081 -1773408 - AluY SINE Alu -10 301 139 339 188 31 0 chr12 142509083 142509147 -1773342 - MSTB1 LTR MaLR -230 202 137 1716 165 72 0 chr12 142509474 142509753 -1772736 - AluJo SINE Alu -13 299 1 374 276 122 61 chr12 142510475 142510689 -1771800 - L1MC5 LINE L1 -257 7704 7478 2033 134 7 26 chr12 142510739 142511046 -1771443 + AluJb SINE Alu 1 301 -11 2219 124 0 0 chr12 142511710 142512009 -1770480 - AluSx SINE Alu -13 299 1 287 157 12 0 chr12 142512013 142512090 -1770399 - L1MD3 LINE L1 0 8042 7942 308 277 62 77 chr12 142513507 142513564 -1768925 - MIR SINE MIR -11 251 195 886 184 24 0 chr12 142513564 142513732 -1768757 - FAM SINE Alu -3 172 1 308 277 62 77 chr12 142513732 142513869 -1768620 - MIR SINE MIR -67 195 60 233 317 141 38 chr12 142514130 142514471 -1768018 + Charlie8 DNA MER1_type 26 401 -2016 397 207 110 65 chr12 142514617 142514707 -1767782 + L2 LINE L2 2258 2343 -971 2176 136 0 3 chr12 142514707 142515008 -1767481 + AluJo SINE Alu 1 300 -12 397 207 110 65 chr12 142515008 142515163 -1767326 + L2 LINE L2 2343 2514 -800 536 203 168 0 chr12 142515165 142515308 -1767181 - L1MB8 LINE L1 -1 6177 6011 920 325 34 31 chr12 142515319 142515446 -1767043 + L2 LINE L2 2513 2638 -675 1639 153 59 35 chr12 142515446 142515734 -1766755 - AluJo SINE Alu -17 295 1 920 325 34 31 chr12 142515734 142516391 -1766098 + L2 LINE L2 2638 3299 -14 1847 163 14 0 chr12 142516435 142516723 -1765766 + AluJb SINE Alu 1 292 -20 215 286 55 0 chr12 142518178 142518269 -1764220 - MIR SINE MIR -9 253 158 352 253 58 23 chr12 142519913 142520000 -1762489 + L1MC4 LINE L1 6614 6703 -1339 31 108 0 0 chr12 142520079 142520208 -1762281 + AT_rich Low_complexity Low_complexity 1 129 0 281 341 96 12 chr12 142520279 142520446 -1762043 + MIR SINE MIR 20 200 -62 1418 171 124 3 chr12 142520485 142520783 -1761706 - MER1B DNA MER1_type 0 337 4 735 272 53 43 chr12 142520874 142521175 -1761314 + MLT1I LTR MaLR 100 403 -6 499 270 94 19 chr12 142521221 142521380 -1761109 + MIR SINE MIR 85 255 -7 1977 101 58 0 chr12 142521458 142521734 -1760755 + AluSc SINE Alu 1 292 -17 243 371 40 11 chr12 142522893 142523068 -1759421 - L1ME LINE L1 -410 5711 5532 488 203 4 48 chr12 142523190 142523331 -1759158 + MIR SINE MIR 35 143 -65 1471 164 21 21 chr12 142523331 142523611 -1758878 - MER4E LTR ERV1 0 766 487 493 133 89 0 chr12 142523611 142523701 -1758788 + MER4A LTR ERV1 1 98 -566 1600 128 157 80 chr12 142523701 142524076 -1758413 + MER4A LTR ERV1 261 664 0 2137 111 0 43 chr12 142524076 142524280 -1758209 - MER4B LTR ERV1 -273 337 153 2027 109 39 3 chr12 142524280 142524563 -1757926 + AluSx SINE Alu 1 293 -19 2137 111 0 43 chr12 142524563 142524709 -1757780 - MER4B LTR ERV1 -457 153 2 223 261 15 0 chr12 142524710 142524775 -1757714 + MIR SINE MIR 167 232 -30 1737 142 8 46 chr12 142524814 142525173 -1757316 - MER4A LTR ERV1 0 664 261 247 91 45 23 chr12 142525173 142525217 -1757272 - MER4A LTR ERV1 -566 98 54 315 0 0 0 chr12 142526271 142526306 -1756183 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2357 87 0 0 chr12 142526308 142526594 -1755895 - AluSx SINE Alu -26 286 1 1662 102 0 4 chr12 142527312 142527537 -1754952 - AluSg/x SINE Alu -1 309 86 531 165 41 8 chr12 142527543 142527664 -1754825 - L1MA4 LINE L1 0 6300 6176 1578 311 50 9 chr12 142527689 142528326 -1754163 - L1ME1 LINE L1 -5 6161 5499 264 320 4 37 chr12 142528460 142528885 -1753604 + GA-rich Low_complexity Low_complexity 1 411 0 331 285 131 9 chr12 142528896 142529110 -1753379 - LTR50 LTR ERVL -555 240 1 401 344 32 13 chr12 142529217 142529371 -1753118 - MIR SINE MIR -21 241 85 315 204 11 45 chr12 142529373 142529461 -1753028 + MER96 DNA MER1_type? 1 85 -90 302 268 0 0 chr12 142529503 142529585 -1752904 - MIR SINE MIR -171 91 10 2339 82 0 47 chr12 142529864 142530183 -1752306 + AluY SINE Alu 1 304 -7 189 159 0 0 chr12 142530738 142530782 -1751707 + T-rich Low_complexity Low_complexity 4 47 0 2409 104 0 0 chr12 142530787 142531095 -1751394 - AluSc SINE Alu -1 308 1 1003 98 33 0 chr12 142531638 142531791 -1750698 + MSTB LTR MaLR 1 158 -268 309 331 49 18 chr12 142532294 142532457 -1750032 + L1MC4 LINE L1 6525 6692 -1350 454 311 0 11 chr12 142532655 142532835 -1749654 + G-rich Low_complexity Low_complexity 1 178 0 321 364 6 0 chr12 142532751 142532927 -1749562 + (TG)n Simple_repeat Simple_repeat 2 178 0 * 393 351 0 8 chr12 142532990 142533419 -1749070 + G-rich Low_complexity Low_complexity 1 425 0 314 384 0 0 chr12 142533342 142533519 -1748970 + (TG)n Simple_repeat Simple_repeat 2 178 0 * 232 406 0 0 chr12 142533489 142533644 -1748845 + G-rich Low_complexity Low_complexity 4 158 0 * 225 278 0 73 chr12 142533649 142533840 -1748649 + (TATG)n Simple_repeat Simple_repeat 3 179 0 759 243 9 10 chr12 142533846 142534173 -1748316 - MLT2C1 LTR ERVL -39 358 1 342 278 66 7 chr12 142534976 142535127 -1747362 + LTR33 LTR ERVL 306 465 -56 199 398 0 0 chr12 142535172 142535255 -1747234 + L2 LINE L2 2702 2784 -530 212 307 123 35 chr12 142536512 142536740 -1745749 - L2 LINE L2 -233 3080 2833 292 169 0 143 chr12 142536978 142537055 -1745434 + L1MB5 LINE L1 6096 6161 -13 511 210 14 17 chr12 142537060 142537271 -1745218 + MER21A LTR ERV1 13 288 -643 23 54 0 0 chr12 142539900 142539937 -1742552 + AT_rich Low_complexity Low_complexity 1 37 0 2349 78 0 20 chr12 142540081 142540377 -1742112 + AluSg SINE Alu 7 296 -14 21 0 0 0 chr12 142540436 142540457 -1742032 + AT_rich Low_complexity Low_complexity 1 21 0 1931 84 0 0 chr12 142540957 142541194 -1741295 - AluSc SINE Alu -72 237 1 1743 199 0 7 chr12 142541300 142541601 -1740888 - AluJo SINE Alu -13 299 1 1096 148 10 49 chr12 142543343 142543546 -1738943 - AluJb SINE Alu -23 289 95 21 57 0 0 chr12 142543998 142544033 -1738456 + AT_rich Low_complexity Low_complexity 1 35 0 1722 132 60 39 chr12 142544298 142544579 -1737910 + AluJo SINE Alu 1 287 -25 1933 136 26 7 chr12 142545046 142545348 -1737141 + AluSx SINE Alu 1 308 -4 819 180 27 54 chr12 142545606 142545745 -1736744 + MLT1H1 LTR MaLR 340 472 -83 2575 110 67 22 chr12 142545745 142546013 -1736476 - MER4C LTR ERV1 0 465 168 1925 169 0 3 chr12 142546013 142546314 -1736175 - AluSx SINE Alu -6 306 7 2575 110 67 22 chr12 142546314 142546490 -1735999 - MER4C LTR ERV1 -297 168 1 819 180 27 54 chr12 142546490 142546572 -1735917 + MLT1H1 LTR MaLR 472 555 0 334 259 7 86 chr12 142546592 142546626 -1735863 - L2 LINE L2 -1 3312 3277 4002 98 13 18 chr12 142546626 142547239 -1735250 + MER4B LTR ERV1 1 610 0 334 259 7 86 chr12 142547239 142547343 -1735146 - L2 LINE L2 -36 3277 3185 429 271 0 0 chr12 142547357 142547534 -1734955 + (TG)n Simple_repeat Simple_repeat 2 178 0 1468 167 28 45 chr12 142547560 142547686 -1734803 + AluJo SINE Alu 1 128 -184 2659 42 3 0 chr12 142547686 142547992 -1734497 + AluY SINE Alu 1 307 -4 1468 167 28 45 chr12 142547992 142548152 -1734337 + AluJo SINE Alu 128 282 -30 288 0 85 0 chr12 142548157 142548204 -1734285 + A-rich Low_complexity Low_complexity 2 52 0 2526 28 0 0 chr12 142548786 142549107 -1733382 + AluY SINE Alu 1 321 0 1134 232 48 31 chr12 142549365 142549718 -1732771 - MER21B LTR ERV1 -105 758 400 360 0 0 0 chr12 142549803 142549843 -1732646 + (TG)n Simple_repeat Simple_repeat 1 40 0 1315 137 11 0 chr12 142549843 142550033 -1732456 - AluJo SINE Alu -33 279 88 820 232 95 17 chr12 142550081 142550322 -1732167 - MER21B LTR ERV1 -506 357 98 247 281 31 0 chr12 142550374 142550438 -1732051 - MER21B LTR ERV1 -776 87 22 315 216 9 121 chr12 142550578 142550653 -1731836 + L2 LINE L2 3211 3293 -20 312 67 50 0 chr12 142550653 142550713 -1731776 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1871 141 14 7 chr12 142550715 142550992 -1731497 - AluSx SINE Alu -32 280 2 315 216 9 121 chr12 142550992 142551029 -1731460 + L2 LINE L2 3294 3313 0 724 244 96 88 chr12 142551233 142551566 -1730923 - LTR8A LTR ERV1 -14 713 384 2471 97 0 3 chr12 142551566 142551876 -1730613 - AluSx SINE Alu -3 309 1 2064 148 10 3 chr12 142551882 142552192 -1730297 - AluJo SINE Alu 0 312 1 724 244 96 88 chr12 142552192 142552269 -1730220 - LTR8A LTR ERV1 -347 380 293 412 262 160 37 chr12 142552478 142552665 -1729824 + MIR SINE MIR 43 252 -10 1462 223 74 30 chr12 142552728 142553091 -1729398 - L1MB5 LINE L1 -13 6161 5783 202 219 52 21 chr12 142553227 142553323 -1729166 + (CAT)n Simple_repeat Simple_repeat 1 99 0 * 425 216 45 23 chr12 142553300 142553476 -1729013 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 375 200 53 35 chr12 142553607 142553777 -1728712 + (CACCAT)n Simple_repeat Simple_repeat 4 176 0 244 239 51 34 chr12 142553811 142553987 -1728502 + (CAT)n Simple_repeat Simple_repeat 1 179 0 234 159 51 85 chr12 142554078 142554254 -1728235 + (CACAT)n Simple_repeat Simple_repeat 3 172 0 * 397 192 42 36 chr12 142554139 142554361 -1728128 + (CACCAT)n Simple_repeat Simple_repeat 1 223 0 335 212 33 54 chr12 142554454 142554638 -1727851 + (CAT)n Simple_repeat Simple_repeat 1 180 0 226 213 27 75 chr12 142554702 142554890 -1727599 + (CAT)n Simple_repeat Simple_repeat 1 179 0 2280 194 75 47 chr12 142554896 142555495 -1726994 - MER21A LTR ERV1 -44 887 269 2302 77 3 7 chr12 142555495 142555781 -1726708 - AluY SINE Alu -26 285 1 2280 194 75 47 chr12 142555781 142555798 -1726691 - MER21A LTR ERV1 -662 269 254 443 210 49 77 chr12 142555898 142556041 -1726448 - LTR8 LTR ERV1 -551 140 2 651 171 8 8 chr12 142556149 142556272 -1726217 + AluJb SINE Alu 2 124 -188 22 0 0 0 chr12 142556281 142556303 -1726186 + AT_rich Low_complexity Low_complexity 1 22 0 2835 148 39 26 chr12 142556605 142557145 -1725344 + LTR10A LTR ERV1 1 547 -62 2351 99 0 0 chr12 142557196 142557490 -1724999 + AluSg SINE Alu 1 294 -16 1052 269 82 19 chr12 142557559 142558034 -1724455 - MLT1D LTR MaLR 0 505 1 593 81 23 0 chr12 142558152 142558239 -1724250 - AluJ/FLAM SINE Alu -221 91 3 24 53 0 0 chr12 142558261 142558299 -1724190 + AT_rich Low_complexity Low_complexity 1 38 0 636 193 15 30 chr12 142558366 142558501 -1723988 + FLAM_A SINE Alu 1 133 0 2296 106 0 10 chr12 142558502 142558805 -1723684 + AluSx SINE Alu 1 300 -12 335 284 37 42 chr12 142558806 142558996 -1723493 + L1MC/D LINE L1 5606 5794 -2014 218 241 17 0 chr12 142559184 142559242 -1723247 + (TA)n Simple_repeat Simple_repeat 2 60 0 2174 139 0 0 chr12 142559242 142559545 -1722944 - AluSx SINE Alu -9 303 1 1700 127 41 8 chr12 142559557 142559824 -1722665 - AluSx SINE Alu -5 307 32 2063 139 0 3 chr12 142561302 142561603 -1720886 - AluJb SINE Alu -6 306 7 321 153 0 0 chr12 142561703 142561775 -1720714 + (TG)n Simple_repeat Simple_repeat 2 73 0 747 155 0 0 chr12 142561803 142561977 -1720512 + (TG)n Simple_repeat Simple_repeat 2 175 0 826 113 0 40 chr12 142562118 142562242 -1720247 + FLAM_C SINE Alu 1 119 -24 30 0 0 0 chr12 142562253 142562283 -1720206 + AT_rich Low_complexity Low_complexity 1 30 0 831 146 42 21 chr12 142562559 142562703 -1719786 - FRAM SINE Alu -27 149 3 1564 239 24 40 chr12 142563637 142563960 -1718529 - MLT1C LTR MaLR -5 462 147 1905 152 0 0 chr12 142563960 142564260 -1718229 + AluJb SINE Alu 6 305 0 1564 239 24 40 chr12 142564260 142564404 -1718085 - MLT1C LTR MaLR -320 147 2 374 275 103 50 chr12 142564580 142564739 -1717750 - L1M4 LINE L1 -913 5233 5052 2123 92 11 3 chr12 142564739 142565042 -1717447 - AluSp SINE Alu 0 305 1 374 275 103 50 chr12 142565042 142565143 -1717346 - L1M4 LINE L1 -1094 5052 4958 1000 167 5 68 chr12 142565154 142565346 -1717143 - AluJ SINE Alu 0 312 133 2026 153 0 0 chr12 142566270 142566577 -1715912 + AluJb SINE Alu 1 307 -5 1649 119 0 0 chr12 142567364 142567583 -1714906 - AluJb SINE Alu -8 304 86 225 196 0 0 chr12 142567649 142567695 -1714794 + (CA)n Simple_repeat Simple_repeat 2 47 0 181 238 24 0 chr12 142567695 142567737 -1714752 + L2 LINE L2 3196 3238 -75 712 220 0 0 chr12 142567948 142568080 -1714409 - AluJ SINE Alu -170 132 1 627 259 94 28 chr12 142568133 142568293 -1714196 + L1MC5 LINE L1 5527 5675 -2133 2075 124 61 25 chr12 142568293 142568655 -1713834 - THE1C LTR MaLR 0 375 1 627 259 94 28 chr12 142568655 142568780 -1713709 + L1MC5 LINE L1 5675 5831 -1977 632 333 38 42 chr12 142568808 142569090 -1713399 + L1MC5 LINE L1 6613 6894 -1067 2237 126 0 16 chr12 142569090 142569407 -1713082 + AluSx SINE Alu 1 312 0 632 333 38 42 chr12 142569407 142569623 -1712866 + L1MC5 LINE L1 6894 7109 -852 2797 35 0 0 chr12 142569627 142569937 -1712552 - AluY SINE Alu -1 310 1 1360 138 36 13 chr12 142570134 142570359 -1712130 - AluJo SINE Alu 0 312 83 432 227 117 18 chr12 142570420 142570583 -1711906 - L1MC5 LINE L1 -285 7676 7498 1039 167 18 55 chr12 142570711 142570986 -1711503 + AluSx SINE Alu 47 311 -1 402 276 98 19 chr12 142570988 142571253 -1711236 + L1ME1 LINE L1 5876 6161 -5 546 308 40 49 chr12 142571255 142571406 -1711083 + HAL1b LINE L1 59 209 -1139 2180 105 3 17 chr12 142571406 142571702 -1710787 + AluSx SINE Alu 1 292 -20 546 308 40 49 chr12 142571702 142571797 -1710692 + HAL1b LINE L1 209 303 -1045 261 211 39 61 chr12 142572146 142572326 -1710163 + (CACCAT)n Simple_repeat Simple_repeat 3 178 0 2526 169 114 2 chr12 142573109 142573655 -1708834 - L1MC1 LINE L1 -2 6331 5725 1694 123 11 4 chr12 142573744 142574021 -1708468 + L1MC/D LINE L1 5456 5734 -599 507 143 13 0 chr12 142574021 142574098 -1708391 + AluSq/x SINE Alu 33 110 -202 315 130 19 0 chr12 142574228 142574282 -1708207 + AluSq SINE Alu 132 186 -117 894 128 40 27 chr12 142574284 142574432 -1708057 - AluSq/x SINE Alu -163 150 1 248 53 26 0 chr12 142574691 142574729 -1707760 + (TG)n Simple_repeat Simple_repeat 1 39 0 1748 199 44 76 chr12 142574747 142575311 -1707178 - MLT2B3 LTR ERVL -8 546 1 1264 281 89 27 chr12 142575547 142576174 -1706315 - L1MC4a LINE L1 -1886 5922 5257 2172 105 34 0 chr12 142576233 142576529 -1705960 - AluSx SINE Alu -6 306 1 374 232 37 116 chr12 142576686 142576850 -1705639 - L1MC4 LINE L1 -1278 6764 6614 309 287 23 11 chr12 142576772 142576859 -1705630 + L1MC4 LINE L1 6615 6702 -1340 * 367 262 73 91 chr12 142576993 142577041 -1705448 - L1MC4a LINE L1 -1564 4582 4535 1776 184 7 85 chr12 142577041 142577464 -1705025 + MLT1B LTR MaLR 1 390 0 367 262 73 91 chr12 142577464 142577690 -1704799 - L1MC4a LINE L1 -1611 4535 4313 186 43 0 0 chr12 142577882 142577905 -1704584 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2116 113 35 0 chr12 142577905 142578189 -1704300 - AluSq SINE Alu -19 294 1 517 62 37 0 chr12 142578189 142578270 -1704219 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 435 287 208 25 chr12 142578291 142578570 -1703919 - L1ME LINE L1 -297 5824 5495 250 252 21 63 chr12 142578573 142578716 -1703773 - L1ME LINE L1 -682 5488 5352 947 118 0 22 chr12 142578748 142578884 -1703605 + FLAM_C SINE Alu 1 133 0 1280 236 39 61 chr12 142579115 142579572 -1702917 + MLT1C LTR MaLR 18 464 -3 2203 117 10 0 chr12 142579890 142580188 -1702301 + AluSq SINE Alu 1 301 -12 983 183 0 0 chr12 142580218 142580387 -1702102 - MLT1A1 LTR MaLR 0 365 197 2325 107 0 3 chr12 142580665 142580964 -1701525 - AluSc SINE Alu -11 298 1 241 175 0 0 chr12 142580994 142581034 -1701455 - Alu SINE Alu -188 114 75 * 1004 177 11 5 chr12 142581031 142581217 -1701272 - MLT1A1 LTR MaLR -178 187 1 1001 276 142 33 chr12 142581268 142581542 -1700947 + L2 LINE L2 2807 3050 -263 2292 78 3 0 chr12 142581542 142581859 -1700630 - AluSx SINE Alu 0 318 1 1588 191 15 7 chr12 142581865 142582138 -1700351 - AluSx SINE Alu -22 290 16 1001 276 142 33 chr12 142582138 142582312 -1700177 + L2 LINE L2 3054 3313 0 295 241 14 106 chr12 142582469 142582610 -1699879 + MER4A LTR ERV1 60 187 -477 407 185 22 104 chr12 142582640 142582775 -1699714 + MER4A LTR ERV1 188 311 -353 760 168 110 6 chr12 142582950 142583123 -1699366 + MER4C LTR ERV1 275 465 0 1861 161 0 3 chr12 142583507 142583799 -1698690 - AluJb SINE Alu -21 291 1 302 290 65 19 chr12 142583799 142583896 -1698593 + L1MC3 LINE L1 6542 6646 -1139 * 323 311 0 38 chr12 142583807 142583913 -1698576 - L1MC4 LINE L1 -1334 6708 6607 24 0 0 0 chr12 142584073 142584097 -1698392 + AT_rich Low_complexity Low_complexity 1 24 0 2359 107 0 0 chr12 142584167 142584476 -1698013 + AluSq SINE Alu 1 309 -4 759 188 101 0 chr12 142584511 142584649 -1697840 + FAM SINE Alu 1 152 -33 180 0 0 0 chr12 142584655 142584675 -1697814 + (CAA)n Simple_repeat Simple_repeat 2 21 0 335 234 76 98 chr12 142584677 142584861 -1697628 + L1MC4a LINE L1 6310 6489 -1319 594 278 23 49 chr12 142585018 142585324 -1697165 + L1MC5 LINE L1 6636 6933 -1028 912 247 149 50 chr12 142585448 142585643 -1696846 - L1M4 LINE L1 -778 5368 5194 2182 132 3 0 chr12 142585643 142585953 -1696536 - AluSx SINE Alu -1 311 1 912 247 149 50 chr12 142585953 142586319 -1696170 - L1M4 LINE L1 -952 5194 4751 254 137 20 20 chr12 142586319 142586392 -1696097 - Alu SINE Alu 0 302 242 * 333 122 27 40 chr12 142586376 142586450 -1696039 + AluSg/x SINE Alu 209 281 -19 357 316 111 21 chr12 142586482 142586672 -1695817 - MIR SINE MIR -31 231 25 1203 262 127 32 chr12 142587376 142587550 -1694939 - MLT1F1 LTR MaLR -54 513 357 1944 147 0 23 chr12 142587550 142587856 -1694633 - AluJo SINE Alu -13 299 1 1203 262 127 32 chr12 142587856 142588147 -1694342 - MLT1F1 LTR MaLR -210 357 4 207 97 32 48 chr12 142588269 142588331 -1694158 + T-rich Low_complexity Low_complexity 2 62 0 2316 113 0 16 chr12 142588352 142588662 -1693827 + AluSx SINE Alu 1 305 -7 2380 76 0 17 chr12 142588713 142589014 -1693475 + AluY SINE Alu 1 296 -15 913 141 0 0 chr12 142589014 142589135 -1693354 - AluJo/FLAM SINE Alu -191 121 1 23 0 0 0 chr12 142589135 142589158 -1693331 + AT_rich Low_complexity Low_complexity 1 23 0 327 67 0 0 chr12 142589158 142589203 -1693286 - Alu SINE Alu -16 286 242 2028 117 6 38 chr12 142589262 142589579 -1692910 - AluSx SINE Alu -5 307 1 1024 162 0 0 chr12 142589666 142589820 -1692669 + FRAM SINE Alu 13 166 -10 1967 134 7 0 chr12 142589992 142590268 -1692221 - AluSx SINE Alu -34 278 1 584 294 104 26 chr12 142590270 142590509 -1691980 - L2 LINE L2 -339 2975 2711 2484 65 7 0 chr12 142590509 142590802 -1691687 - AluY SINE Alu -16 295 1 584 294 104 26 chr12 142590802 142590831 -1691658 - L2 LINE L2 -603 2711 2686 1585 206 3 3 chr12 142590838 142591124 -1691365 + AluJo SINE Alu 9 294 -18 1771 180 87 69 chr12 142591126 142591298 -1691191 + L1MC4 LINE L1 7405 7572 -470 2173 118 0 0 chr12 142591298 142591585 -1690904 + AluSx SINE Alu 9 295 -17 2180 102 3 23 chr12 142591590 142591893 -1690596 + AluSc SINE Alu 1 297 -12 1771 180 87 69 chr12 142591893 142592219 -1690270 + L1MC4 LINE L1 7575 7918 -124 1132 144 75 20 chr12 142592262 142592463 -1690026 + AluJo SINE Alu 81 292 -20 1472 181 8 15 chr12 142592636 142592902 -1689587 - AluJo SINE Alu -46 266 3 1946 128 0 0 chr12 142592932 142593198 -1689291 + AluSx SINE Alu 30 295 -17 1252 95 24 0 chr12 142593203 142593372 -1689117 + AluSg/x SINE Alu 136 308 -4 776 170 7 15 chr12 142593636 142593771 -1688718 - FRAM SINE Alu -24 152 19 350 181 149 32 chr12 142594478 142594572 -1687917 + AluSq/x SINE Alu 35 139 -164 940 85 0 0 chr12 142594577 142594695 -1687794 + FLAM_A SINE Alu 11 128 -14 208 170 0 38 chr12 142595270 142595323 -1687166 + (CCCCG)n Simple_repeat Simple_repeat 4 54 0 350 257 7 34 chr12 142595451 142595599 -1686890 + G-rich Low_complexity Low_complexity 4 147 0 253 233 31 62 chr12 142595615 142595744 -1686745 + C-rich Low_complexity Low_complexity 2 126 0 1672 158 84 3 chr12 142597159 142597443 -1685046 - AluJb SINE Alu -5 307 1 1925 131 13 24 chr12 142598122 142598420 -1684069 - AluSx SINE Alu -17 295 1 1665 174 21 3 chr12 142598524 142598811 -1683678 - AluJo SINE Alu -20 292 1 283 275 125 62 chr12 142601179 142601339 -1681150 + MER5B DNA MER1_type 9 178 0 813 276 74 35 chr12 142601901 142602095 -1680394 - L1M4 LINE L1 -1579 4567 4382 2315 116 0 3 chr12 142602095 142602406 -1680083 - AluSg SINE Alu 0 310 1 813 276 74 35 chr12 142602406 142602700 -1679789 - L1M4 LINE L1 -1764 4382 4060 395 263 53 0 chr12 142602971 142603085 -1679404 - MER103 DNA DNA -45 121 2 901 81 24 0 chr12 142604312 142604436 -1678053 + AluSg/x SINE Alu 150 276 -36 275 0 0 28 chr12 142604440 142604476 -1678013 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2303 99 0 10 chr12 142606787 142607090 -1675399 + AluSq SINE Alu 2 301 -12 30 77 0 0 chr12 142607185 142607250 -1675239 + AT_rich Low_complexity Low_complexity 1 65 0 752 149 0 9 chr12 142608553 142608667 -1673822 - FRAM SINE Alu -32 144 32 326 277 35 121 chr12 142609029 142609260 -1673229 - L1ME4a LINE L1 -214 5907 5697 1341 266 81 16 chr12 142610262 142610417 -1672072 + L1MB8 LINE L1 5674 5818 -360 2044 146 0 0 chr12 142610417 142610725 -1671764 - AluSx SINE Alu -4 308 1 1512 191 10 40 chr12 142610726 142611030 -1671459 - AluJo SINE Alu -17 295 1 1341 266 81 16 chr12 142611030 142611344 -1671145 + L1MB8 LINE L1 5817 6176 -2 788 198 0 0 chr12 142611453 142611579 -1670910 + FLAM_C SINE Alu 8 133 -10 1373 171 14 5 chr12 142611699 142611921 -1670568 + AluJo SINE Alu 86 309 -3 1255 236 27 21 chr12 142612026 142612357 -1670132 + MER46C DNA MER2_type 5 337 -1 724 148 16 0 chr12 142612833 142612961 -1669528 + LTR47A LTR ERVL 323 452 0 439 264 118 19 chr12 142613431 142613643 -1668846 + L1MEc LINE L1 45 277 -6119 945 251 82 28 chr12 142614085 142614439 -1668050 + L1MEc LINE L1 571 943 -5453 889 269 130 19 chr12 142614701 142615162 -1667327 - LTR40a LTR ERVL -6 513 2 351 323 116 26 chr12 142615726 142615915 -1666574 - MIR SINE MIR -43 219 14 260 239 0 14 chr12 142616264 142616335 -1666154 + MER4A LTR ERV1 3 72 -592 436 282 152 47 chr12 142616508 142616916 -1665573 + L1MC5 LINE L1 7336 7786 -175 32 26 0 0 chr12 142617583 142617622 -1664867 + AT_rich Low_complexity Low_complexity 1 39 0 673 181 113 45 chr12 142617732 142617909 -1664580 + MER5A DNA MER1_type 1 189 0 2462 91 0 3 chr12 142619187 142619494 -1662995 - AluSg SINE Alu -4 306 1 733 183 8 23 chr12 142619516 142619647 -1662842 + FLAM_A SINE Alu 5 133 0 340 273 162 7 chr12 142619759 142619916 -1662573 + MER20B DNA MER1_type 5 183 -43 * 442 178 56 0 chr12 142619912 142620002 -1662487 + U13 snRNA snRNA 1 95 -9 * 1247 235 129 41 chr12 142620000 142620536 -1661953 + MER20B DNA MER1_type 175 757 -26 209 204 0 0 chr12 142621228 142621277 -1661212 + A-rich Low_complexity Low_complexity 1 49 0 877 319 97 59 chr12 142621509 142622263 -1660226 + L1MEd LINE L1 562 1374 -4864 314 286 0 68 chr12 142622291 142622424 -1660065 + L1MEd LINE L1 1452 1575 -4735 821 204 0 48 chr12 142622700 142622741 -1659748 + AluJb SINE Alu 92 133 -179 333 0 0 0 chr12 142622741 142622778 -1659711 + (TA)n Simple_repeat Simple_repeat 2 38 0 821 204 0 48 chr12 142622778 142622922 -1659567 + AluJb SINE Alu 133 268 -44 317 333 31 0 chr12 142622968 142623097 -1659392 - MIR SINE MIR -82 180 48 1217 117 5 10 chr12 142623894 142624091 -1658398 - L1PA12 LINE L1 -166 6002 5807 1788 161 3 3 chr12 142624317 142624615 -1657874 - AluJb SINE Alu -8 304 7 1959 155 3 0 chr12 142624808 142625099 -1657390 + AluJo SINE Alu 7 298 -14 1867 128 66 0 chr12 142625102 142625376 -1657113 + AluY SINE Alu 1 292 -19 2104 132 3 22 chr12 142625378 142625696 -1656793 + AluSx SINE Alu 1 312 0 434 196 10 0 chr12 142625705 142625807 -1656682 + GA-rich Low_complexity Low_complexity 4 106 0 1217 174 39 5 chr12 142626289 142626496 -1655993 + AluJb SINE Alu 1 214 -98 546 214 0 0 chr12 142626496 142626594 -1655895 + AluJb SINE Alu 134 231 -81 186 43 0 0 chr12 142626602 142626625 -1655864 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 294 283 185 42 chr12 142627145 142627545 -1654944 + L2 LINE L2 2836 3292 -21 1946 170 0 0 chr12 142627815 142628115 -1654374 - AluSx SINE Alu -12 300 1 264 111 127 16 chr12 142628128 142628191 -1654298 + MLT1K LTR MaLR 511 580 -8 1793 105 109 0 chr12 142628514 142628780 -1653709 + AluSx SINE Alu 9 303 -9 1881 166 3 0 chr12 142629409 142629704 -1652785 + AluJo SINE Alu 1 296 -16 1924 162 0 23 chr12 142630667 142630976 -1651513 - AluJb SINE Alu -10 302 1 259 316 52 63 chr12 142631046 142631220 -1651269 - MIR SINE MIR -21 241 70 192 304 89 13 chr12 142631237 142631316 -1651173 + MIR3 SINE MIR 110 194 -14 1500 159 0 87 chr12 142631509 142631694 -1650795 - AluJo SINE Alu -11 301 154 1960 144 34 0 chr12 142631694 142631986 -1650503 - AluSx SINE Alu -10 302 1 1500 159 0 87 chr12 142631986 142632121 -1650368 - AluJo SINE Alu -158 154 9 880 155 18 18 chr12 142632342 142632510 -1649979 - MER105 DNA DNA -3 201 34 23 33 0 0 chr12 142633506 142633536 -1648953 + GC_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr12 142633677 142633700 -1648789 + GC_rich Low_complexity Low_complexity 1 23 0 1214 262 58 35 chr12 142634267 142634749 -1647740 - MER77 LTR ERV1 -6 599 132 1200 101 6 0 chr12 142634974 142635132 -1647357 + AluSq SINE Alu 140 298 -15 797 219 0 7 chr12 142635365 142635535 -1646954 - FRAM SINE Alu 0 169 1 4465 59 12 0 chr12 142635587 142636161 -1646328 + MER11B LTR ERVK 2 582 -654 1018 136 34 0 chr12 142636161 142636308 -1646181 + AluJb SINE Alu 137 288 -24 1985 131 33 13 chr12 142636704 142637009 -1645480 - AluSq SINE Alu -2 311 1 2057 149 3 0 chr12 142638908 142639216 -1643273 + AluSx SINE Alu 4 312 0 509 199 80 57 chr12 142639378 142639526 -1642963 + MLT1D LTR MaLR 4 158 -347 856 94 86 0 chr12 142639526 142639654 -1642835 + MER85 DNA T2_type 1 139 0 509 199 80 57 chr12 142639654 142639681 -1642808 + MLT1D LTR MaLR 158 183 -322 1212 195 16 52 chr12 142639787 142640094 -1642395 + AluJo SINE Alu 1 296 -16 2791 120 9 15 chr12 142640263 142640729 -1641760 + MER11C LTR ERVK 595 1057 -14 742 133 0 59 chr12 142640921 142641079 -1641410 + FRAM SINE Alu 1 40 0 229 220 0 20 chr12 142641084 142641134 -1641355 + GA-rich Low_complexity Low_complexity 2 50 0 973 131 0 27 chr12 142641135 142641318 -1641171 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1317 130 26 10 chr12 142641363 142641555 -1640934 + AluJo SINE Alu 87 281 -31 704 33 80 7 chr12 142641557 142641707 -1640782 + (TA)n Simple_repeat Simple_repeat 1 161 0 286 206 31 69 chr12 142641725 142641885 -1640604 + (CATATA)n Simple_repeat Simple_repeat 6 159 0 1923 113 0 0 chr12 142641997 142642263 -1640226 - AluY SINE Alu -45 266 1 233 400 15 15 chr12 142642267 142642402 -1640087 + L2 LINE L2 2895 3029 -284 1898 187 8 35 chr12 142642669 142643044 -1639445 - MLT1A1 LTR MaLR 0 365 1 722 194 8 16 chr12 142643535 142643664 -1638825 + FLAM_C SINE Alu 4 131 -12 408 290 24 0 chr12 142643723 142643847 -1638642 + L1MEc LINE L1 35 161 -6235 1580 139 0 29 chr12 142645749 142645993 -1636496 - AluJo SINE Alu -8 304 68 760 109 9 0 chr12 142645994 142646104 -1636385 + HY1 scRNA scRNA 1 111 -1 34 0 0 0 chr12 142646104 142646138 -1636351 + AT_rich Low_complexity Low_complexity 1 34 0 376 240 0 0 chr12 142646140 142646215 -1636274 - AluJo SINE Alu -227 75 1 184 366 0 0 chr12 142646295 142646366 -1636123 + L2 LINE L2 2665 2735 -579 612 235 26 13 chr12 142646626 142646778 -1635711 - MER50 LTR ERV1 -566 168 15 1711 247 86 11 chr12 142646778 142647301 -1635188 + MLT1E2 LTR MaLR 1 562 -64 2263 84 0 7 chr12 142647350 142647635 -1634854 - AluSx SINE Alu -29 283 1 467 305 14 43 chr12 142648169 142648451 -1634038 - AluSq SINE Alu -3 310 37 249 192 82 43 chr12 142648737 142648852 -1633637 + MLT1D LTR MaLR 349 505 0 724 243 158 15 chr12 142648856 142649128 -1633361 - Charlie1b DNA MER1_type -183 340 30 2026 133 17 0 chr12 142649186 142649480 -1633009 + AluSx SINE Alu 1 299 -13 1181 152 160 13 chr12 142649991 142650222 -1632267 - AluJb SINE Alu -47 265 1 345 274 34 17 chr12 142651343 142651460 -1631029 + L1MC5 LINE L1 7813 7931 -30 185 275 0 0 chr12 142652083 142652123 -1630366 + MIR SINE MIR 113 152 -110 681 126 10 0 chr12 142652591 142652694 -1629795 - AluY SINE Alu -19 292 189 1859 152 3 20 chr12 142653425 142653721 -1628768 - AluSx SINE Alu -18 294 4 238 283 13 17 chr12 142654012 142654149 -1628340 + A-rich Low_complexity Low_complexity 1 229 0 311 296 0 65 chr12 142654269 142654438 -1628051 + C-rich Low_complexity Low_complexity 6 163 0 2601 256 59 48 chr12 142654856 142655632 -1626857 + L1MEc LINE L1 58 825 -5571 2144 108 3 14 chr12 142655632 142655964 -1626525 - AluSc SINE Alu 0 309 1 2601 256 59 48 chr12 142655964 142656197 -1626292 + L1MEc LINE L1 825 1083 -5313 1699 192 3 3 chr12 142656197 142656488 -1626001 + AluJb SINE Alu 1 291 -21 2601 256 59 48 chr12 142656488 142656637 -1625852 + L1MEc LINE L1 1083 1229 -5167 491 174 0 0 chr12 142656639 142656725 -1625764 - Tigger5 DNA MER2_type 0 2323 2238 269 194 16 16 chr12 142656787 142656849 -1625640 - Tigger5 DNA MER2_type -8 2315 2254 * 312 148 19 0 chr12 142656821 142656875 -1625614 - Tigger5 DNA MER2_type -2268 55 1 2692 265 63 23 chr12 142656896 142658446 -1624043 + L1MEc LINE L1 1278 2842 -3373 1233 148 0 5 chr12 142658572 142658761 -1623728 + AluSg/x SINE Alu 121 308 -2 3027 234 56 7 chr12 142658761 142659718 -1622771 + L1M4 LINE L1 4307 5311 -846 2502 60 0 10 chr12 142659723 142660037 -1622452 - AluY SINE Alu 0 311 1 1831 159 26 23 chr12 142660065 142660367 -1622122 - AluJo SINE Alu -9 303 1 322 267 95 9 chr12 142660395 142660500 -1621989 - L2 LINE L2 0 3313 3200 218 299 60 43 chr12 142661668 142661785 -1620704 - MER5A DNA MER1_type -56 133 15 188 204 23 0 chr12 142662195 142662239 -1620250 - L2 LINE L2 -349 2965 2921 527 278 144 49 chr12 142664428 142664774 -1617715 + MLT1J2 LTR MaLR 50 428 -22 346 260 125 0 chr12 142665304 142665408 -1617081 - LTR67 LTR ERVL 0 557 441 2227 126 126 3 chr12 142665591 142665972 -1616517 - MSTA LTR MaLR 0 428 1 311 54 0 0 chr12 142665975 142666012 -1616477 - MSTA LTR MaLR -391 37 1 441 216 82 37 chr12 142666093 142666227 -1616262 - MLT1J2 LTR MaLR -39 411 272 289 301 140 48 chr12 142666591 142666777 -1615712 - MIR SINE MIR -8 254 52 1927 177 8 19 chr12 142667646 142668014 -1614475 + MLT1A1 LTR MaLR 1 364 -1 323 319 29 59 chr12 142668087 142668146 -1614343 + Charlie8 DNA MER1_type 3 62 -279 2275 103 3 3 chr12 142668146 142668458 -1614031 - AluSq SINE Alu -1 312 1 323 319 29 59 chr12 142668458 142668602 -1613887 + Charlie8 DNA MER1_type 62 200 -141 607 219 59 53 chr12 142668746 142668933 -1613556 - L1ME LINE L1 -635 5529 5342 2449 71 0 6 chr12 142669016 142669327 -1613162 - AluSx SINE Alu -3 309 1 266 238 0 36 chr12 142669407 142669491 -1612998 - LTR33 LTR ERVL -387 134 54 2124 106 0 7 chr12 142670520 142670812 -1611677 + AluSc SINE Alu 1 290 -19 1500 174 3 37 chr12 142671057 142671356 -1611133 - AluJb SINE Alu -23 289 1 864 179 0 0 chr12 142671360 142671494 -1610995 - FRAM SINE Alu -21 155 22 847 120 0 38 chr12 142672137 142672270 -1610219 + AluJ SINE Alu 1 128 -174 571 122 0 0 chr12 142672280 142672362 -1610127 + AluJ SINE Alu 207 288 -24 1992 155 10 3 chr12 142672371 142672681 -1609808 + AluJb SINE Alu 1 312 0 1577 118 0 0 chr12 142673414 142673626 -1608863 - AluJb SINE Alu -16 296 85 435 282 28 14 chr12 142674212 142674354 -1608135 + MIR SINE MIR 13 156 -106 906 205 5 21 chr12 142674360 142674550 -1607939 + AluJb SINE Alu 114 300 -12 2357 108 3 0 chr12 142675179 142675485 -1607004 - AluSp SINE Alu -6 307 1 1832 171 7 10 chr12 142675840 142676149 -1606340 + AluJb SINE Alu 1 308 -4 2126 117 7 0 chr12 142676201 142676492 -1605997 + AluSx SINE Alu 1 293 -19 183 343 129 28 chr12 142678814 142678953 -1603536 + L2 LINE L2 2816 2940 -373 1543 103 192 35 chr12 142678953 142679214 -1603275 - AluSx SINE Alu -10 302 1 183 343 129 28 chr12 142679214 142679322 -1603167 + L2 LINE L2 2940 3088 -225 589 167 8 8 chr12 142679357 142679489 -1603000 + CT-rich Low_complexity Low_complexity 4 135 0 422 378 17 17 chr12 142680048 142680281 -1602208 + MIR SINE MIR 13 245 -17 1920 217 52 26 chr12 142680734 142681278 -1601211 - L1MDa LINE L1 -3023 3383 2826 2165 155 68 141 chr12 142681281 142681836 -1600653 - MLT2B3 LTR ERVL -5 515 1 1076 244 69 56 chr12 142681837 142682086 -1600403 - L1MDa LINE L1 -3580 2826 2582 3462 51 19 0 chr12 142682086 142682514 -1599975 + L1PA6 LINE L1 5717 6152 -2 1076 244 69 56 chr12 142682514 142682779 -1599710 - L1MDa LINE L1 -3824 2582 2315 635 209 0 22 chr12 142683085 142683219 -1599270 - FLAM_A SINE Alu -1 132 2 2182 212 113 71 chr12 142683219 142683509 -1598980 - L1MDa LINE L1 -4246 2160 1884 1733 170 21 10 chr12 142683509 142683798 -1598691 - AluJo SINE Alu -20 292 1 2182 212 113 71 chr12 142683798 142683894 -1598595 - L1MDa LINE L1 -4522 1884 1793 225 0 0 0 chr12 142683894 142683919 -1598570 + (TA)n Simple_repeat Simple_repeat 2 26 0 2182 212 113 71 chr12 142683919 142683943 -1598546 - L1MDa LINE L1 -4613 1793 1771 2110 98 11 7 chr12 142683943 142684230 -1598259 - AluY SINE Alu -23 288 1 2182 212 113 71 chr12 142684230 142684792 -1597697 - L1MDa LINE L1 -4635 1771 1145 384 267 17 0 chr12 142684959 142685075 -1597414 - L1MDa LINE L1 -5271 1138 1021 1179 194 40 12 chr12 142685243 142685491 -1596998 - MLT1A1 LTR MaLR -11 354 100 348 330 52 57 chr12 142685637 142685706 -1596783 + MLT1K LTR MaLR 20 88 -500 674 274 90 51 chr12 142685706 142686096 -1596393 - MLT1I LTR MaLR 0 409 5 348 330 52 57 chr12 142686096 142686238 -1596251 + MLT1K LTR MaLR 88 230 -358 373 315 91 35 chr12 142686292 142686524 -1595965 + MLT1K LTR MaLR 342 586 -2 2375 97 3 3 chr12 142687213 142687521 -1594968 - AluSg SINE Alu -2 308 1 391 262 0 28 chr12 142687553 142687660 -1594829 - MLT1J LTR MaLR -92 419 316 439 231 52 22 chr12 142687677 142687811 -1594678 - L1ME1 LINE L1 -7 6159 6022 394 261 17 0 chr12 142687913 142688028 -1594461 - L1M4 LINE L1 -1778 5163 5047 * 471 233 26 0 chr12 142688016 142688132 -1594357 - L1MB7 LINE L1 -28 6156 6038 2656 271 31 40 chr12 142688140 142689446 -1593043 - L1MCc LINE L1 -3312 3629 2313 1033 141 17 6 chr12 142689446 142689623 -1592866 - L1MB7 LINE L1 -16 6168 5990 2656 271 31 40 chr12 142689623 142691777 -1590712 - L1MCc LINE L1 -4628 2313 25 465 261 71 81 chr12 142691778 142692100 -1590389 - MLT1J LTR MaLR -187 324 6 2304 108 0 3 chr12 142692244 142692551 -1589938 + AluSx SINE Alu 1 306 -6 2143 199 55 66 chr12 142692617 142693236 -1589253 + LTR9 LTR ERV1 1 612 0 1137 266 63 18 chr12 142694138 142694536 -1587953 - L1M4 LINE L1 -2001 4145 3730 827 203 61 45 chr12 142694573 142694819 -1587670 - L1M4 LINE L1 -3123 3023 2774 231 114 0 0 chr12 142694819 142694854 -1587635 + (A)n Simple_repeat Simple_repeat 1 35 0 1975 121 14 3 chr12 142694855 142695144 -1587345 + AluSg SINE Alu 1 292 -18 799 100 0 15 chr12 142695144 142695274 -1587215 + (TA)n Simple_repeat Simple_repeat 2 129 0 231 269 15 0 chr12 142695299 142695366 -1587123 + C-rich Low_complexity Low_complexity 3 70 0 267 252 0 0 chr12 142695386 142695497 -1586992 + C-rich Low_complexity Low_complexity 1 111 0 420 353 0 0 chr12 142695515 142695651 -1586838 + C-rich Low_complexity Low_complexity 1 136 0 204 40 0 0 chr12 142695674 142695699 -1586790 + (C)n Simple_repeat Simple_repeat 1 25 0 206 346 0 0 chr12 142695736 142695817 -1586672 + C-rich Low_complexity Low_complexity 3 83 0 643 105 16 0 chr12 142696007 142696131 -1586358 + HSATII Satellite Satellite 18 143 -27 306 192 55 0 chr12 142696152 142696225 -1586264 + (CATTC)n Satellite Satellite 2 78 0 1019 119 11 6 chr12 142696232 142697656 -1584833 + HSATII Satellite Satellite 1 1430 -23 1010 115 13 15 chr12 142697678 142701302 -1581187 + HSATII Satellite Satellite 1 3613 -44 899 129 3 17 chr12 142701323 142701673 -1580816 + HSATII Satellite Satellite 1 345 -1 371 153 32 23 chr12 142701822 142701908 -1580581 - AluS SINE Alu -229 70 1 259 356 8 0 chr12 142702077 142702195 -1580294 + L1MC4a LINE L1 7090 7208 -600 2706 181 49 4 chr12 142703128 142703682 -1578807 + L1MB3 LINE L1 5605 6183 0 205 303 79 0 chr12 142703754 142703843 -1578646 - L2 LINE L2 -1432 1882 1787 2459 93 0 0 chr12 142704649 142704959 -1577530 - AluSg SINE Alu 0 310 1 2176 131 0 7 chr12 142705950 142706256 -1576233 + AluSx SINE Alu 1 304 -8 2493 64 0 3 chr12 142706257 142706555 -1575934 + AluSg SINE Alu 1 297 -13 21 0 0 0 chr12 142706600 142706621 -1575868 + AT_rich Low_complexity Low_complexity 1 21 0 288 186 86 0 chr12 142706975 142707045 -1575444 - L1MB3 LINE L1 -12 6171 6096 1945 153 0 7 chr12 142707545 142707839 -1574650 + AluSx SINE Alu 1 292 -20 2138 107 13 10 chr12 142707902 142708211 -1574278 + AluSx SINE Alu 3 312 0 2083 102 33 23 chr12 142709066 142709369 -1573120 - AluSx SINE Alu -2 310 5 1056 290 94 9 chr12 142711663 142712087 -1570402 + LTR16B LTR ERVL 1 460 -4 2358 101 0 0 chr12 142712985 142713291 -1569198 - AluY SINE Alu -5 306 1 579 223 25 25 chr12 142713395 142713552 -1568937 - FAM SINE Alu -8 41 1 3573 174 30 48 chr12 142715062 142715106 -1567383 + LTR39 LTR ERV1 30 73 -710 2262 100 3 19 chr12 142715106 142715417 -1567072 + AluSg SINE Alu 1 306 -4 3573 174 30 48 chr12 142715417 142715682 -1566807 + LTR39 LTR ERV1 73 341 -442 2104 94 7 14 chr12 142715682 142715959 -1566530 - AluSx SINE Alu -10 302 28 3573 174 30 48 chr12 142715959 142716416 -1566073 + LTR39 LTR ERV1 341 783 0 494 280 58 34 chr12 142716421 142716628 -1565861 - L2 LINE L2 -25 3288 3077 527 273 64 21 chr12 142717621 142717808 -1564681 - MIR SINE MIR -3 259 65 215 61 30 0 chr12 142718285 142718318 -1564171 + (CA)n Simple_repeat Simple_repeat 2 35 0 2058 114 50 17 chr12 142719526 142719823 -1562666 - AluSx SINE Alu -1 311 5 2096 126 0 19 chr12 142720342 142720651 -1561838 - AluSx SINE Alu -9 303 1 352 317 11 33 chr12 142721414 142721597 -1560892 + (CA)n Simple_repeat Simple_repeat 1 179 0 * 395 313 0 33 chr12 142721526 142721708 -1560781 + (CATA)n Simple_repeat Simple_repeat 4 179 0 * 418 361 0 6 chr12 142721660 142721884 -1560605 + (CA)n Simple_repeat Simple_repeat 1 222 0 313 269 6 6 chr12 142721929 142722096 -1560393 + (CA)n Simple_repeat Simple_repeat 2 168 0 213 281 0 18 chr12 142722109 142722166 -1560323 + (CA)n Simple_repeat Simple_repeat 2 57 0 258 330 19 0 chr12 142722607 142722710 -1559779 + CT-rich Low_complexity Low_complexity 1 105 0 202 93 23 23 chr12 142722713 142722756 -1559733 + (TCCC)n Simple_repeat Simple_repeat 2 44 0 2264 105 0 0 chr12 142722766 142723062 -1559427 - AluSx SINE Alu -16 296 1 260 275 72 0 chr12 142723785 142723854 -1558635 + L2 LINE L2 3229 3302 -11 1974 149 3 0 chr12 142723858 142724140 -1558349 + AluJo SINE Alu 6 288 -24 213 272 76 33 chr12 142724434 142724526 -1557963 - MIR3 SINE MIR -10 198 103 207 204 0 0 chr12 142725108 142725152 -1557337 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 222 37 0 0 chr12 142725225 142725252 -1557237 + (CA)n Simple_repeat Simple_repeat 1 27 0 375 300 217 13 chr12 142725265 142725578 -1556911 - L2 LINE L2 -50 3263 2887 294 326 0 0 chr12 142725944 142726033 -1556456 + CT-rich Low_complexity Low_complexity 1 89 0 357 300 48 44 chr12 142726327 142726554 -1555935 + Charlie8 DNA MER1_type 57 284 -2133 2729 42 0 0 chr12 142727602 142727913 -1554576 + AluY SINE Alu 1 311 0 1171 276 93 26 chr12 142728086 142728698 -1553791 - L1MC4a LINE L1 -1880 5928 5276 1032 318 106 38 chr12 142728795 142728967 -1553522 - L1MC4a LINE L1 -1098 5048 4889 2510 83 3 0 chr12 142728967 142729279 -1553210 + AluSq SINE Alu 1 313 0 1032 318 106 38 chr12 142729279 142729861 -1552628 - L1MC4a LINE L1 -1257 4889 4243 352 359 46 26 chr12 142730032 142730227 -1552262 + L1ME LINE L1 5606 5804 -317 212 261 192 8 chr12 142730456 142730586 -1551903 + MIR SINE MIR 77 230 -32 468 314 29 87 chr12 142730597 142730909 -1551580 - L1MC4a LINE L1 -1947 4199 3906 891 110 16 0 chr12 142731356 142731483 -1551006 - FLAM_C SINE Alu -14 129 1 3791 119 10 0 chr12 142733839 142734361 -1548128 + MER1A DNA MER1_type 1 527 0 25 65 0 0 chr12 142735758 142735804 -1546685 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr12 142735815 142735850 -1546639 + AT_rich Low_complexity Low_complexity 1 35 0 338 281 256 0 chr12 142737551 142737750 -1544739 + Charlie8 DNA MER1_type 26 275 -2142 476 273 85 6 chr12 142737789 142737954 -1544535 + MIR SINE MIR 23 200 -62 218 264 11 33 chr12 142738127 142738218 -1544271 - MIR SINE MIR -1 261 173 858 136 0 23 chr12 142738370 142738502 -1543987 + FLAM_C SINE Alu 5 133 0 257 219 0 24 chr12 142738966 142739048 -1543441 - MER113 DNA MER1_type? -405 116 37 325 319 86 55 chr12 142739702 142739959 -1542530 + L2 LINE L2 2958 3222 -50 340 163 70 12 chr12 142740064 142740150 -1542339 + L1MB1 LINE L1 6076 6166 -2 406 259 9 9 chr12 142740326 142740438 -1542051 - L3 LINE CR1 -155 1422 1311 276 191 16 16 chr12 142740842 142740905 -1541584 - MIR3 SINE MIR -37 171 109 341 263 35 26 chr12 142740971 142741085 -1541404 + MER5A DNA MER1_type 47 161 -28 1803 167 0 14 chr12 142741300 142741593 -1540896 + AluJo SINE Alu 1 289 -23 471 256 81 0 chr12 142741595 142741755 -1540734 + Charlie8 DNA MER1_type 87 259 -2158 923 226 11 0 chr12 142742484 142742665 -1539824 + MIR SINE MIR 6 188 -74 21 0 0 0 chr12 142743264 142743285 -1539204 + AT_rich Low_complexity Low_complexity 1 21 0 405 0 0 0 chr12 142744376 142744421 -1538068 + (CA)n Simple_repeat Simple_repeat 1 45 0 2507 65 0 0 chr12 142744668 142744960 -1537529 - AluY SINE Alu -17 294 3 2358 93 0 0 chr12 142744966 142745256 -1537233 - AluSx SINE Alu -22 290 1 323 299 70 44 chr12 142745645 142745916 -1536573 + L1ME4a LINE L1 5588 5865 -256 365 257 211 17 chr12 142746103 142746278 -1536211 + MIR SINE MIR 43 251 -11 265 235 130 26 chr12 142746827 142746942 -1535547 + MIR SINE MIR 40 166 -96 231 293 0 0 chr12 142747000 142747058 -1535431 + CT-rich Low_complexity Low_complexity 3 60 0 207 204 0 0 chr12 142747070 142747114 -1535375 + CT-rich Low_complexity Low_complexity 3 46 0 799 273 41 9 chr12 142747578 142747798 -1534691 + MIR SINE MIR 4 230 -32 1532 134 4 4 chr12 142749019 142749257 -1533232 - L1MC1 LINE L1 -2 6331 6094 649 191 0 13 chr12 142749298 142749455 -1533034 + CT-rich Low_complexity Low_complexity 2 156 0 229 28 56 0 chr12 142749455 142749491 -1532998 + (TC)n Simple_repeat Simple_repeat 1 38 0 1429 205 22 7 chr12 142749491 142749764 -1532725 - AluJo SINE Alu -5 307 31 4280 226 30 20 chr12 142749767 142750106 -1532383 - L1M4 LINE L1 -840 5306 4972 2395 79 3 7 chr12 142750106 142750409 -1532080 - AluSq SINE Alu -11 302 1 4280 226 30 20 chr12 142750409 142751293 -1531196 - L1M4 LINE L1 -1174 4972 4070 1250 201 43 11 chr12 142752388 142752666 -1529823 - L1MB5 LINE L1 0 6174 5888 196 235 0 0 chr12 142752748 142752782 -1529707 + L2 LINE L2 3216 3249 -23 727 284 118 62 chr12 142753059 142753608 -1528881 - MLT1K LTR MaLR -7 581 2 636 250 199 0 chr12 142756047 142756243 -1526246 + MIR SINE MIR 7 241 -21 600 197 128 0 chr12 142756276 142756393 -1526096 + FLAM_A SINE Alu 1 132 -1 2364 107 0 0 chr12 142756395 142756703 -1525786 + AluSx SINE Alu 1 308 -4 499 222 160 33 chr12 142757561 142757773 -1524716 + MIR SINE MIR 3 241 -21 333 0 0 0 chr12 142757929 142757966 -1524523 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 212 326 35 23 chr12 142757968 142758054 -1524435 - L2 LINE L2 -48 3224 3138 316 275 52 13 chr12 142758109 142758264 -1524225 + MIR SINE MIR 29 187 -21 415 259 29 22 chr12 142758514 142758653 -1523836 - MLT1L LTR MaLR -337 278 139 290 300 50 8 chr12 142759302 142759422 -1523067 - L2 LINE L2 -1 3271 3147 309 250 102 98 chr12 142760031 142760295 -1522194 - MER102b DNA MER1_type 0 341 77 6726 58 35 61 chr12 142760316 142762756 -1519733 - SVA Other Other -518 1385 1 186 43 0 0 chr12 142762756 142762779 -1519710 + (GGGAGA)n Simple_repeat Simple_repeat 3 25 0 2329 126 0 0 chr12 142763007 142763318 -1519171 - AluSx SINE Alu -3 309 1 1055 198 23 19 chr12 142763432 142763695 -1518794 + MER33 DNA MER1_type 56 319 -5 976 228 62 0 chr12 142763707 142763918 -1518571 + MER58A DNA MER1_type 1 224 0 339 353 52 9 chr12 142764229 142764461 -1518028 - Charlie8 DNA MER1_type -2138 279 38 199 228 0 53 chr12 142764608 142764665 -1517824 - L2 LINE L2 -5 3267 3214 2302 107 3 0 chr12 142765014 142765324 -1517165 + AluSx SINE Alu 1 311 -1 231 235 189 12 chr12 142765850 142766093 -1516396 - L1ME4a LINE L1 -3 6118 5833 516 200 83 83 chr12 142766104 142766309 -1516180 - MLT1J2 LTR MaLR 0 450 242 323 325 76 6 chr12 142769021 142769178 -1513311 + MER5A DNA MER1_type 1 168 -21 409 194 92 0 chr12 142770788 142770929 -1511560 + MIR SINE MIR 1 164 -65 296 306 25 25 chr12 142770960 142771117 -1511372 - MLT1K LTR MaLR -36 552 396 212 337 0 0 chr12 142771191 142771274 -1511215 + GA-rich Low_complexity Low_complexity 3 85 0 457 251 209 11 chr12 142771774 142771961 -1510528 - MER58A DNA MER1_type 0 224 1 479 260 52 19 chr12 142772501 142772702 -1509787 + MIR SINE MIR 9 214 -37 326 325 122 32 chr12 142773676 142774183 -1508306 + L1MC4 LINE L1 7360 7912 -130 270 256 31 6 chr12 142774217 142774377 -1508112 + (TG)n Simple_repeat Simple_repeat 2 165 0 503 151 0 32 chr12 142775626 142775752 -1506737 + (CACCC)n Simple_repeat Simple_repeat 3 124 0 344 312 43 22 chr12 142776020 142776158 -1506331 - L2 LINE L2 0 3313 3173 450 224 51 56 chr12 142776602 142776798 -1505691 + MER106A DNA MER1_type 38 232 -4 184 174 65 43 chr12 142777498 142777544 -1504945 - L2 LINE L2 0 3313 3267 344 250 222 7 chr12 142777544 142777688 -1504801 + MER96 DNA MER1_type? 1 175 0 448 368 91 24 chr12 142777733 142778280 -1504209 - MLT1K LTR MaLR -3 585 2 357 310 0 18 chr12 142778284 142778415 -1504074 - MIR SINE MIR -65 143 21 326 98 0 0 chr12 142779436 142779487 -1503002 - U5 snRNA snRNA -65 51 1 427 307 0 0 chr12 142779823 142779999 -1502490 + GA-rich Low_complexity Low_complexity 2 177 0 225 253 0 0 chr12 142780057 142780203 -1502286 + GA-rich Low_complexity Low_complexity 2 147 0 194 382 46 15 chr12 142780330 142780461 -1502028 + L2 LINE L2 2618 2752 -562 2188 98 3 0 chr12 142781157 142781452 -1501037 + AluSx SINE Alu 1 296 -16 199 172 0 62 chr12 142781720 142781784 -1500705 + (CA)n Simple_repeat Simple_repeat 2 61 0 393 106 0 171 chr12 142781805 142782022 -1500467 + (CA)n Simple_repeat Simple_repeat 1 180 0 200 160 11 66 chr12 142782068 142782249 -1500240 + (CA)n Simple_repeat Simple_repeat 1 171 0 460 177 6 66 chr12 142782315 142782496 -1499993 + (CA)n Simple_repeat Simple_repeat 1 170 0 316 329 55 0 chr12 142785429 142785593 -1496896 - Charlie8 DNA MER1_type -2242 175 3 966 278 74 52 chr12 142785600 142786060 -1496429 - L1MD3 LINE L1 -8 7987 7518 1752 163 9 27 chr12 142786090 142786258 -1496231 - MLT1B LTR MaLR -52 338 177 1735 168 14 0 chr12 142786258 142786550 -1495939 - AluJb SINE Alu -16 296 1 1752 163 9 27 chr12 142786550 142786719 -1495770 - MLT1B LTR MaLR -213 177 7 2934 274 99 58 chr12 142786736 142788315 -1494174 - L1MC4a LINE L1 -480 7328 5686 1496 224 19 0 chr12 142788999 142789321 -1493168 + MER7A DNA MER2_type 21 346 0 2008 128 27 0 chr12 142790084 142790381 -1492108 - AluSx SINE Alu -7 305 1 545 174 45 30 chr12 142791203 142791335 -1491154 - MER20 DNA MER1_type -55 164 31 233 271 94 0 chr12 142791404 142791489 -1491000 - L1ME LINE L1 -369 5801 5709 234 91 0 0 chr12 142791734 142791767 -1490722 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 319 71 24 chr12 142791772 142791941 -1490548 - L1ME4a LINE L1 -81 6040 5864 305 300 22 11 chr12 142792050 142792140 -1490349 - L1ME4a LINE L1 -430 5691 5601 471 282 28 0 chr12 142792313 142792455 -1490034 - L1ME3A LINE L1 -5 6165 6020 814 311 77 17 chr12 142792469 142793251 -1489238 - L1ME LINE L1 -455 5715 4886 318 348 86 23 chr12 142793547 142793784 -1488705 - L1ME4a LINE L1 -704 5474 5221 633 235 87 0 chr12 142793838 142794034 -1488455 - MLT1D LTR MaLR -258 247 35 183 345 48 0 chr12 142797889 142797973 -1484516 - L2 LINE L2 -2 3270 3183 448 313 190 9 chr12 142798492 142799080 -1483409 + L2 LINE L2 2514 3219 -94 209 182 18 0 chr12 142799083 142799138 -1483351 + GA-rich Low_complexity Low_complexity 2 57 0 327 244 23 23 chr12 142799154 142799240 -1483249 + L2 LINE L2 3226 3311 -2 328 296 69 33 chr12 142799414 142799806 -1482683 + L2 LINE L2 2600 3068 -204 242 308 45 0 chr12 142800792 142800948 -1481541 + (CACTG)n Simple_repeat Simple_repeat 1 163 0 304 288 47 0 chr12 142801142 142801312 -1481177 + (CACCG)n Simple_repeat Simple_repeat 1 178 0 254 298 47 6 chr12 142801538 142801709 -1480780 + (CACCG)n Simple_repeat Simple_repeat 1 178 0 266 275 54 6 chr12 142801759 142801926 -1480563 + (CACTG)n Simple_repeat Simple_repeat 1 175 0 228 298 50 6 chr12 142802005 142802166 -1480323 + (CACTG)n Simple_repeat Simple_repeat 1 168 0 214 304 50 6 chr12 142802193 142802354 -1480135 + (CACTG)n Simple_repeat Simple_repeat 1 168 0 * 235 303 40 17 chr12 142802292 142802467 -1480022 + (CACCG)n Simple_repeat Simple_repeat 1 179 0 223 264 51 39 chr12 142802478 142802656 -1479833 + (CACTG)n Simple_repeat Simple_repeat 1 180 0 314 253 35 0 chr12 142804340 142804427 -1478062 + Charlie8 DNA MER1_type 59 148 -2269 225 182 23 0 chr12 142804801 142804845 -1477644 + CT-rich Low_complexity Low_complexity 3 47 0 232 232 27 89 chr12 142806676 142806788 -1475701 - Charlie8 DNA MER1_type -2258 159 55 185 121 0 0 chr12 142806977 142807010 -1475479 + L2 LINE L2 3240 3272 0 197 346 40 25 chr12 142807777 142807936 -1474553 - MIR SINE MIR -67 141 29 964 236 107 70 chr12 142808114 142808601 -1473888 - LTR53 LTR ERVL -11 508 4 282 240 183 19 chr12 142810187 142810291 -1472198 - MIR SINE MIR -68 140 20 239 369 57 0 chr12 142813637 142813759 -1468730 + MIR SINE MIR 17 145 -117 270 81 0 0 chr12 142814751 142814788 -1467701 + (CAT)n Simple_repeat Simple_repeat 2 38 0 2214 125 60 34 chr12 142814944 142815236 -1467253 - MSTA LTR MaLR 0 428 120 1921 161 24 0 chr12 142815236 142815565 -1466924 - MER1B DNA MER1_type 0 337 1 2214 125 60 34 chr12 142815565 142815688 -1466801 - MSTA LTR MaLR -308 120 2 2024 135 0 6 chr12 142816020 142816332 -1466157 - AluSx SINE Alu 0 312 3 257 0 0 29 chr12 142816426 142816460 -1466029 + (AATTG)n Simple_repeat Simple_repeat 4 36 0 378 263 3 4 chr12 142818421 142818546 -1463943 - L1ME LINE L1 -685 5470 5354 621 248 68 75 chr12 142818676 142818983 -1463506 - L1ME1 LINE L1 -6 6160 5856 609 240 65 18 chr12 142819026 142819255 -1463234 - L1MEc LINE L1 -5779 617 378 498 289 51 40 chr12 142819288 142819541 -1462948 - L1MEc LINE L1 -6106 290 35 919 247 56 62 chr12 142819741 142820114 -1462375 + LTR37A LTR ERV1 56 426 0 725 227 82 76 chr12 142821941 142822351 -1460138 - MLT1C LTR MaLR -7 383 1 2815 184 42 47 chr12 142822994 142823724 -1458765 - L1MDa LINE L1 -4450 2090 1363 1956 122 7 23 chr12 142823724 142824028 -1458461 - AluSx SINE Alu -13 299 1 2815 184 42 47 chr12 142824028 142824099 -1458390 - L1MDa LINE L1 -5177 1363 1293 1184 184 0 5 chr12 142824099 142824305 -1458184 + MER46A DNA MER2_type 1 205 -31 1458 218 57 3 chr12 142824305 142824690 -1457799 - L1MDa LINE L1 -5280 1260 855 414 222 239 17 chr12 142824734 142824910 -1457579 - L1MDa LINE L1 -6014 526 312 3774 215 96 69 chr12 142826067 142826562 -1455927 - L1MD1 LINE L1 0 6311 5831 1758 101 115 4 chr12 142826562 142826840 -1455649 - AluSg1 SINE Alu 0 309 1 3774 215 96 69 chr12 142826840 142827004 -1455485 - L1MD1 LINE L1 -480 5831 5673 1945 144 105 12 chr12 142827004 142827337 -1455152 + THE1B LTR MaLR 1 364 0 3774 215 96 69 chr12 142827337 142829030 -1453459 - L1MD1 LINE L1 -638 5673 3883 196 333 41 0 chr12 142831056 142831179 -1451310 - L2 LINE L2 -5 3267 3140 262 286 68 12 chr12 142831375 142831536 -1450953 - L2 LINE L2 -443 2871 2702 387 288 74 9 chr12 142831648 142831863 -1450626 - L2 LINE L2 -860 2454 2226 190 190 17 69 chr12 142832601 142832659 -1449830 + L3 LINE CR1 584 638 -939 380 384 50 4 chr12 142833848 142834090 -1448399 + MIR SINE MIR 7 259 -3 244 250 14 14 chr12 142834179 142834251 -1448238 - LTR67 LTR ERVL -22 535 464 283 376 0 0 chr12 142835569 142835718 -1446771 + (AAGTG)n Simple_repeat Simple_repeat 3 151 0 311 382 0 0 chr12 142835741 142835959 -1446530 + (AAGTG)n Simple_repeat Simple_repeat 1 218 0 1988 183 7 62 chr12 142838137 142838553 -1443936 - MSTD LTR MaLR -3 393 1 755 290 63 33 chr12 142840695 142841029 -1441460 - L2 LINE L2 -1 3312 2969 893 177 0 34 chr12 142842278 142842453 -1440036 - FRAM SINE Alu -9 167 1 1500 254 19 32 chr12 142843393 142843858 -1438631 - L1ME1 LINE L1 -6 6160 5702 * 4590 261 47 20 chr12 142843856 142845157 -1437332 - L1MD1 LINE L1 -2307 3908 2542 2550 46 0 0 chr12 142845157 142845463 -1437026 - AluY SINE Alu -5 306 1 4590 261 47 20 chr12 142845463 142846455 -1436034 - L1MD1 LINE L1 -3673 2542 1578 30 0 0 0 chr12 142846624 142846654 -1435835 + AT_rich Low_complexity Low_complexity 1 30 0 363 250 19 77 chr12 142847846 142847867 -1434622 - L1ME4a LINE L1 -42 6079 6058 1728 177 0 16 chr12 142847867 142848178 -1434311 + AluJo SINE Alu 5 310 -2 363 250 19 77 chr12 142848178 142848312 -1434177 - L1ME4a LINE L1 -63 6058 5933 374 293 78 95 chr12 142849523 142849923 -1432566 - L2 LINE L2 -14 3299 2907 32 0 0 0 chr12 142851430 142851462 -1431027 + AT_rich Low_complexity Low_complexity 1 32 0 1771 156 3 0 chr12 142851462 142851744 -1430745 - AluJo SINE Alu -24 288 6 249 150 0 0 chr12 142851767 142851807 -1430682 - Alu SINE Alu -176 126 87 261 204 212 29 chr12 142853436 142853573 -1428916 - MER5A DNA MER1_type -19 170 9 394 308 79 0 chr12 142855260 142855456 -1427033 - L1ME4a LINE L1 -463 5658 5534 554 325 88 27 chr12 142857294 142857731 -1424758 + Charlie8 DNA MER1_type 5 457 -1960 197 256 90 13 chr12 142858331 142858409 -1424080 + MIR SINE MIR 66 149 -59 488 106 0 86 chr12 142858475 142858737 -1423752 + (CCCCAG)n Simple_repeat Simple_repeat 1 239 0 867 177 6 23 chr12 142860785 142860960 -1421529 - AluJb SINE Alu -4 308 137 344 278 49 21 chr12 142861613 142861757 -1420732 + LTR33A LTR ERVL 376 523 0 327 279 74 0 chr12 142863448 142863570 -1418919 + MIR SINE MIR 60 190 -72 264 305 49 0 chr12 142863633 142863715 -1418774 - L2 LINE L2 -30 3283 3198 269 271 29 35 chr12 142864558 142864728 -1417761 + (TTGG)n Simple_repeat Simple_repeat 1 169 0 393 185 45 51 chr12 142864842 142865020 -1417469 + (TTGG)n Simple_repeat Simple_repeat 3 179 0 254 297 30 6 chr12 142865009 142865174 -1417315 + (ATTG)n Simple_repeat Simple_repeat 1 169 0 * 300 223 39 10 chr12 142865072 142865175 -1417314 + (TTGG)n Simple_repeat Simple_repeat 4 109 0 2290 88 16 3 chr12 142865879 142866229 -1416260 - AluSx SINE Alu 0 354 1 301 372 152 0 chr12 142868876 142869040 -1413449 - MIR SINE MIR -43 219 31 213 320 200 6 chr12 142869929 142870256 -1412233 - L2 LINE L2 -301 3012 2622 246 318 188 5 chr12 142870647 142870839 -1411650 - MIR SINE MIR -21 241 15 333 245 32 11 chr12 142871461 142871555 -1410934 - MER5A DNA MER1_type -80 109 14 440 234 39 34 chr12 142872956 142873165 -1409324 - MLT1K LTR MaLR -303 285 139 401 275 41 12 chr12 142873463 142873634 -1408855 + (GGATG)n Simple_repeat Simple_repeat 3 178 0 7029 233 47 37 chr12 142873774 142875688 -1406801 - L1M4c LINE L1 -2910 4047 2153 1836 166 17 0 chr12 142875688 142875989 -1406500 - AluJb SINE Alu -6 306 1 7029 233 47 37 chr12 142875989 142877935 -1404554 - L1M4c LINE L1 -4804 2153 11 186 103 0 0 chr12 142878587 142878616 -1403873 + (CA)n Simple_repeat Simple_repeat 1 29 0 451 298 72 22 chr12 142878774 142878955 -1403534 + Charlie8 DNA MER1_type 33 222 -2195 479 302 136 11 chr12 142879693 142880054 -1402435 - MLT1I LTR MaLR -3 406 1 227 256 152 43 chr12 142880451 142880615 -1401874 - MIR SINE MIR -68 194 13 233 296 45 11 chr12 142881581 142881669 -1400820 - MER103 DNA DNA 0 166 76 754 285 41 18 chr12 142881888 142882375 -1400114 - MLT1K LTR MaLR -22 566 35 797 212 124 0 chr12 142882453 142882646 -1399843 - MER20 DNA MER1_type 0 219 3 227 226 19 0 chr12 142882889 142882942 -1399547 + GA-rich Low_complexity Low_complexity 3 56 0 374 329 39 13 chr12 142884537 142884692 -1397797 + MIR SINE MIR 85 243 -19 2199 92 20 0 chr12 142885970 142886276 -1396213 - AluSx SINE Alu 0 312 1 339 244 67 8 chr12 142886421 142886540 -1395949 - MLT1K LTR MaLR -303 285 160 2265 76 40 3 chr12 142887641 142887942 -1394547 - AluSx SINE Alu 0 312 1 203 333 32 0 chr12 142887942 142888005 -1394484 - MER5B DNA MER1_type -36 142 78 399 363 50 64 chr12 142888212 142888713 -1393776 + L1 LINE L1 3028 3521 -2625 357 310 0 18 chr12 142889055 142889186 -1393303 - MIR SINE MIR -65 143 21 326 98 0 0 chr12 142890207 142890258 -1392231 - U5 snRNA snRNA -65 51 1 430 301 0 0 chr12 142890594 142890770 -1391719 + GA-rich Low_complexity Low_complexity 2 177 0 276 244 0 0 chr12 142890828 142890992 -1391497 + GA-rich Low_complexity Low_complexity 2 165 0 194 382 46 15 chr12 142891119 142891250 -1391239 + L2 LINE L2 2618 2752 -562 2213 92 3 0 chr12 142891946 142892241 -1390248 + AluSx SINE Alu 1 296 -16 199 172 0 62 chr12 142892510 142892574 -1389915 + (CA)n Simple_repeat Simple_repeat 2 61 0 404 106 0 171 chr12 142892595 142892812 -1389677 + (CA)n Simple_repeat Simple_repeat 1 180 0 200 160 11 66 chr12 142892858 142893039 -1389450 + (CA)n Simple_repeat Simple_repeat 1 171 0 460 177 6 66 chr12 142893105 142893286 -1389203 + (CA)n Simple_repeat Simple_repeat 1 170 0 316 329 55 0 chr12 142896079 142896243 -1386246 - Charlie8 DNA MER1_type -2242 175 3 960 281 74 50 chr12 142896250 142896709 -1385780 - L1MD3 LINE L1 -8 7987 7518 1770 160 9 27 chr12 142896739 142896907 -1385582 - MLT1B LTR MaLR -52 338 177 1735 168 14 0 chr12 142896907 142897199 -1385290 - AluJb SINE Alu -16 296 1 1770 160 9 27 chr12 142897199 142897368 -1385121 - MLT1B LTR MaLR -213 177 7 2939 274 97 58 chr12 142897385 142898966 -1383523 - L1MC4a LINE L1 -480 7328 5686 1504 221 19 0 chr12 142899646 142899968 -1382521 + MER7A DNA MER2_type 21 346 0 2028 125 27 0 chr12 142900731 142901028 -1381461 - AluSx SINE Alu -7 305 1 545 174 45 30 chr12 142901850 142901982 -1380507 - MER20 DNA MER1_type -55 164 31 233 271 94 0 chr12 142902051 142902136 -1380353 - L1ME LINE L1 -369 5801 5709 234 91 0 0 chr12 142902381 142902414 -1380075 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 319 71 24 chr12 142902419 142902588 -1379901 - L1ME4a LINE L1 -81 6040 5864 305 300 22 11 chr12 142902697 142902787 -1379702 - L1ME4a LINE L1 -430 5691 5601 471 282 28 0 chr12 142902960 142903102 -1379387 - L1ME3A LINE L1 -5 6165 6020 814 311 77 17 chr12 142903116 142903898 -1378591 - L1ME LINE L1 -455 5715 4886 322 364 118 5 chr12 142904194 142904381 -1378108 - L1ME4a LINE L1 -704 5474 5267 633 235 87 0 chr12 142904485 142904681 -1377808 - MLT1D LTR MaLR -258 247 35 183 345 48 0 chr12 142908631 142908715 -1373774 - L2 LINE L2 -2 3270 3183 461 291 162 11 chr12 142909364 142909826 -1372663 + L2 LINE L2 2677 3219 -94 209 182 18 0 chr12 142909829 142909884 -1372605 + GA-rich Low_complexity Low_complexity 2 57 0 254 267 27 27 chr12 142909900 142909975 -1372514 + L2 LINE L2 3226 3300 -13 354 288 71 36 chr12 142910157 142910549 -1371940 + L2 LINE L2 2600 3068 -204 242 308 45 0 chr12 142911535 142911691 -1370798 + (CACTG)n Simple_repeat Simple_repeat 1 163 0 304 288 47 0 chr12 142911885 142912055 -1370434 + (CACCG)n Simple_repeat Simple_repeat 1 178 0 254 298 47 6 chr12 142912281 142912452 -1370037 + (CACCG)n Simple_repeat Simple_repeat 1 178 0 266 275 54 6 chr12 142912502 142912669 -1369820 + (CACTG)n Simple_repeat Simple_repeat 1 175 0 228 298 50 6 chr12 142912748 142912909 -1369580 + (CACTG)n Simple_repeat Simple_repeat 1 168 0 214 304 50 6 chr12 142912936 142913097 -1369392 + (CACTG)n Simple_repeat Simple_repeat 1 168 0 * 235 303 40 17 chr12 142913035 142913210 -1369279 + (CACCG)n Simple_repeat Simple_repeat 1 179 0 223 264 51 39 chr12 142913221 142913399 -1369090 + (CACTG)n Simple_repeat Simple_repeat 1 180 0 314 253 35 0 chr12 142915083 142915170 -1367319 + Charlie8 DNA MER1_type 59 148 -2269 225 182 23 0 chr12 142915544 142915588 -1366901 + CT-rich Low_complexity Low_complexity 3 47 0 232 232 27 89 chr12 142917416 142917528 -1364961 - Charlie8 DNA MER1_type -2269 148 44 185 121 0 0 chr12 142917717 142917750 -1364739 + L2 LINE L2 3240 3272 0 197 346 40 25 chr12 142918516 142918675 -1363814 - MIR SINE MIR -67 141 29 964 236 107 70 chr12 142918853 142919340 -1363149 - LTR53 LTR ERVL -11 508 4 262 250 183 19 chr12 142920926 142921030 -1361459 - MIR SINE MIR -68 140 20 239 369 57 0 chr12 142924241 142924363 -1358126 + MIR SINE MIR 17 145 -117 270 81 0 0 chr12 142925353 142925390 -1357099 + (CAT)n Simple_repeat Simple_repeat 2 38 0 2047 125 60 34 chr12 142925546 142925838 -1356651 - MSTA LTR MaLR 0 428 120 1951 158 24 0 chr12 142925838 142926167 -1356322 - MER1B DNA MER1_type 0 337 1 2047 125 60 34 chr12 142926167 142926290 -1356199 - MSTA LTR MaLR -308 120 2 1983 144 0 6 chr12 142926621 142926933 -1355556 - AluSx SINE Alu 0 312 3 257 0 0 29 chr12 142927027 142927061 -1355428 + (AATTG)n Simple_repeat Simple_repeat 4 36 0 355 263 3 4 chr12 142929020 142929145 -1353344 - L1ME LINE L1 -685 5470 5354 550 257 68 75 chr12 142929275 142929582 -1352907 - L1ME1 LINE L1 -6 6160 5856 541 240 65 18 chr12 142929625 142929854 -1352635 - L1MEc LINE L1 -5779 617 378 399 316 47 36 chr12 142929887 142930140 -1352349 - L1MEc LINE L1 -6106 290 35 842 247 56 62 chr12 142930340 142930713 -1351776 + LTR37A LTR ERV1 56 426 0 657 221 82 82 chr12 142932539 142932949 -1349540 - MLT1C LTR MaLR -7 383 1 2611 184 42 47 chr12 142933592 142934322 -1348167 - L1MDa LINE L1 -4450 2090 1363 1987 122 7 23 chr12 142934322 142934626 -1347863 - AluSx SINE Alu -13 299 1 2611 184 42 47 chr12 142934626 142934697 -1347792 - L1MDa LINE L1 -5177 1363 1293 1114 184 0 5 chr12 142934697 142934903 -1347586 + MER46A DNA MER2_type 1 205 -31 1177 221 71 3 chr12 142934903 142935283 -1347206 - L1MDa LINE L1 -5280 1260 855 348 233 233 11 chr12 142935327 142935503 -1346986 - L1MDa LINE L1 -6014 526 312 3468 215 96 69 chr12 142936660 142937155 -1345334 - L1MD1 LINE L1 0 6242 5762 1714 112 115 4 chr12 142937155 142937433 -1345056 - AluSg1 SINE Alu 0 309 1 3468 215 96 69 chr12 142937433 142937597 -1344892 - L1MD1 LINE L1 -480 5762 5604 1939 144 105 12 chr12 142937597 142937930 -1344559 + THE1B LTR MaLR 1 364 0 3468 215 96 69 chr12 142937930 142939623 -1342866 - L1MD1 LINE L1 -638 5604 3814 285 272 46 17 chr12 142941982 142942155 -1340334 + (AGGTG)n Simple_repeat Simple_repeat 1 178 0 271 260 0 82 chr12 142942091 142942287 -1340202 + (GGGTG)n Simple_repeat Simple_repeat 1 180 0 * 21 57 0 0 chr12 142942929 142942964 -1339525 + AT_rich Low_complexity Low_complexity 1 35 0 2441 46 0 17 chr12 142943449 142943751 -1338738 + AluY SINE Alu 1 297 -14 986 240 77 0 chr12 142943768 142943976 -1338513 + MER58A DNA MER1_type 1 224 0 2154 166 31 21 chr12 142944735 142945120 -1337369 - MLT1B LTR MaLR 0 390 2 395 252 0 42 chr12 142945343 142945542 -1336947 + (CAGAGA)n Simple_repeat Simple_repeat 1 207 -358 1782 180 61 0 chr12 142945542 142945887 -1336602 - MER47A DNA MER2_type 0 366 1 395 252 0 42 chr12 142945887 142945933 -1336556 + (CAGAGA)n Simple_repeat Simple_repeat 207 565 0 1922 195 55 11 chr12 142945950 142946329 -1336160 + MSTD LTR MaLR 1 396 0 237 238 0 87 chr12 142947758 142947943 -1334546 + (GGGTG)n Simple_repeat Simple_repeat 1 169 0 21 57 0 0 chr12 142948364 142948399 -1334090 + AT_rich Low_complexity Low_complexity 1 35 0 484 233 71 43 chr12 142949508 142949718 -1332771 + L1M4 LINE L1 14 229 -6313 233 351 76 8 chr12 142950013 142950144 -1332345 - MIR SINE MIR -7 255 116 622 286 71 65 chr12 142950163 142950835 -1331654 - MER76 LTR ERV -10 678 3 215 328 69 17 chr12 142951213 142951339 -1331150 - MIR SINE MIR -55 153 29 240 289 12 12 chr12 142952269 142952352 -1330137 - MLT1K LTR MaLR -21 567 485 319 297 62 8 chr12 142954650 142954662 -1327827 - L2 LINE L2 -1 3312 3302 243 0 0 0 chr12 142954662 142954689 -1327800 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 319 297 62 8 chr12 142954689 142954804 -1327685 - L2 LINE L2 -11 3302 3178 255 275 52 48 chr12 142955039 142955188 -1327301 + MIR SINE MIR 18 165 -62 195 129 0 0 chr12 142957678 142957709 -1324780 + (CCCG)n Simple_repeat Simple_repeat 3 33 0 211 308 31 0 chr12 142961421 142961486 -1321003 - L2 LINE L2 -4 3268 3202 1982 123 17 10 chr12 142961781 142962083 -1320406 - AluSx SINE Alu -8 304 1 33 73 0 0 chr12 142962258 142962326 -1320163 + AT_rich Low_complexity Low_complexity 1 68 0 239 300 44 33 chr12 143013099 143013189 -1269300 - L2 LINE L2 0 3272 3182 1458 228 71 38 chr12 143014121 143014632 -1267857 - LTR49 LTR ERV1 -23 572 124 4742 150 53 33 chr12 143014738 143015381 -1267108 - MER4D LTR ERV1 0 903 236 1703 97 130 11 chr12 143015381 143015650 -1266839 - AluSg1 SINE Alu -8 301 1 4742 150 53 33 chr12 143015650 143015891 -1266598 - MER4D LTR ERV1 -667 236 1 1840 141 27 113 chr12 143016024 143016465 -1266024 - MER57A LTR ERV1 0 403 1 954 300 92 21 chr12 143016531 143016954 -1265535 + LTR38 LTR ERV1 98 550 -6 610 186 8 8 chr12 143017027 143017145 -1265344 + MLT1A1 LTR MaLR 2 119 -246 234 270 14 14 chr12 143018379 143018453 -1264036 - Charlie8 DNA MER1_type -2271 146 73 207 219 16 8 chr12 143019615 143019743 -1262746 + (CACCT)n Simple_repeat Simple_repeat 3 131 0 206 324 27 0 chr12 143020086 143020160 -1262329 + L2 LINE L2 2553 2628 -686 193 213 85 0 chr12 143020238 143020285 -1262204 - MER5A DNA MER1_type -119 70 20 294 164 0 0 chr12 143020347 143020402 -1262087 + (CA)n Simple_repeat Simple_repeat 1 55 0 261 290 109 65 chr12 143020461 143020737 -1261752 + L2 LINE L2 2889 3176 -96 224 284 198 17 chr12 143021264 143021380 -1261109 - L2 LINE L2 0 3272 3136 2486 105 31 0 chr12 143021717 143022070 -1260419 - THE1B LTR MaLR 0 364 1 8856 114 55 7 chr12 143022075 143023577 -1258912 - THE1B-int LTR MaLR -6 1574 1 481 272 105 12 chr12 143025304 143025466 -1257023 - MER91B DNA MER1_type -13 177 1 586 299 68 5 chr12 143025467 143025688 -1256801 + L2 LINE L2 3079 3313 0 746 156 11 17 chr12 143026959 143027139 -1255350 + (TCTG)n Simple_repeat Simple_repeat 1 179 0 1070 219 61 28 chr12 143027653 143028045 -1254444 - MER68 LTR ERV1 -149 413 9 377 253 111 0 chr12 143028261 143028423 -1254066 + L1MB2 LINE L1 2034 2213 -4171 21 0 0 0 chr12 143028772 143028793 -1253696 + AT_rich Low_complexity Low_complexity 1 21 0 781 201 52 38 chr12 143029229 143029518 -1252971 + L1MB2 LINE L1 2195 2487 -3897 652 165 22 8 chr12 143029523 143029788 -1252701 - L1MA4A LINE L1 -23 6280 5951 4501 265 53 16 chr12 143029789 143031305 -1251184 + L1MB2 LINE L1 2477 4570 -1812 2218 79 3 10 chr12 143031305 143031608 -1250881 + AluY SINE Alu 1 301 -10 4501 265 53 16 chr12 143031608 143032151 -1250338 + L1MB2 LINE L1 4570 5091 -1291 2170 201 76 14 chr12 143032150 143032713 -1249776 + L1MB2 LINE L1 5810 6407 0 * 438 276 112 30 chr12 143033418 143033716 -1248773 + L2 LINE L2 2716 3038 -275 1374 253 96 7 chr12 143034262 143034701 -1247788 - MER63 DNA MER1_type -71 990 513 1570 191 23 16 chr12 143034711 143035020 -1247469 - AluJb SINE Alu -1 311 1 374 217 0 127 chr12 143035285 143035442 -1247047 - LTR41 LTR ERVL -6 767 631 479 325 6 6 chr12 143035537 143035697 -1246792 - LTR41 LTR ERVL -612 161 2 * 580 328 43 0 chr12 143035697 143035925 -1246564 - MER63 DNA MER1_type -823 238 1 363 281 29 29 chr12 143035983 143036154 -1246335 - L1MC5 LINE L1 -473 7488 7318 239 279 7 0 chr12 143037261 143037415 -1245074 + (TG)n Simple_repeat Simple_repeat 2 156 0 495 318 6 6 chr12 143037438 143037608 -1244881 + (TG)n Simple_repeat Simple_repeat 2 171 0 301 335 11 43 chr12 143037575 143037816 -1244673 + (TATG)n Simple_repeat Simple_repeat 1 233 0 * 190 262 16 0 chr12 143037819 143037941 -1244548 + (TG)n Simple_repeat Simple_repeat 1 124 0 358 351 33 0 chr12 143038207 143038358 -1244131 - Charlie8 DNA MER1_type -2236 181 26 259 256 81 23 chr12 143040780 143040866 -1241623 - MIR SINE MIR -55 207 117 459 224 12 6 chr12 143041929 143042099 -1240390 + GA-rich Low_complexity Low_complexity 2 172 0 266 234 14 106 chr12 143042118 143042259 -1240230 + MLT1K LTR MaLR 394 521 -67 933 101 0 7 chr12 143043986 143044134 -1238355 - THE1B-int LTR MaLR -1433 147 1 2474 124 25 0 chr12 143044134 143044489 -1238000 - THE1B LTR MaLR 0 364 1 661 220 101 28 chr12 143044741 143044959 -1237530 - MLT1E1 LTR MaLR -16 638 405 336 267 12 0 chr12 143045066 143045152 -1237337 - MLT1E1 LTR MaLR -278 252 166 1029 207 21 8 chr12 143045157 143045394 -1237095 - MLT1E1 LTR MaLR -393 261 22 2676 143 54 54 chr12 143046391 143046945 -1235544 - MER41A LTR ERV1 0 554 1 2824 171 122 38 chr12 143047431 143048068 -1234421 - LTR8 LTR ERV1 0 691 1 985 206 10 5 chr12 143048180 143048389 -1234100 + MER2 DNA MER2_type 2 211 -134 2117 108 29 10 chr12 143048414 143048720 -1233769 - AluSx SINE Alu 0 312 1 288 308 39 0 chr12 143049052 143049130 -1233359 + L3b LINE CR1 1501 1581 -2 1491 175 53 10 chr12 143050668 143050971 -1231518 - L1PB3 LINE L1 0 6154 5839 499 200 0 0 chr12 143050971 143051071 -1231418 + L1PB3 LINE L1 5749 5848 -303 198 340 28 0 chr12 143051946 143052052 -1230437 + L2 LINE L2 1987 2095 -1219 635 234 58 32 chr12 143052132 143052320 -1230169 + L1M4b LINE L1 619 811 -6048 523 176 208 0 chr12 143054132 143054257 -1228232 - MLT1A1 LTR MaLR -4 361 211 283 229 239 0 chr12 143054988 143055097 -1227392 + L2 LINE L2 3138 3272 0 389 281 35 38 chr12 143055147 143055313 -1227176 - MER5A DNA MER1_type -3 186 13 266 287 7 0 chr12 143056026 143056169 -1226320 + (CA)n Simple_repeat Simple_repeat 1 144 0 440 324 68 11 chr12 143056679 143056855 -1225634 + MIR SINE MIR 23 208 -54 974 197 142 4 chr12 143056959 143057198 -1225291 + ORSL DNA AcHobo 1 272 -3 485 265 48 0 chr12 143057219 143057366 -1225123 - MLT1K LTR MaLR -266 322 169 410 322 87 0 chr12 143057960 143058143 -1224346 - L1ME LINE L1 -404 5766 5568 265 259 0 0 chr12 143058222 143058280 -1224209 + (CA)n Simple_repeat Simple_repeat 2 59 0 309 285 89 32 chr12 143059525 143059683 -1222806 + MIR SINE MIR 26 192 -70 233 226 0 0 chr12 143060665 143060718 -1221771 - MLT1K LTR MaLR -361 227 175 415 233 40 62 chr12 143060719 143060895 -1221594 - MLT1K LTR MaLR -341 247 76 288 293 93 49 chr12 143061640 143061865 -1220624 + MIR SINE MIR 17 251 -11 3571 40 16 13 chr12 143061887 143062390 -1220099 + LTR6B LTR ERV1 1 558 0 201 253 5 108 chr12 143063780 143063974 -1218515 + C-rich Low_complexity Low_complexity 4 177 0 339 267 68 11 chr12 143064163 143064354 -1218135 - Charlie2 DNA MER1_type -370 2492 2291 192 77 0 0 chr12 143065579 143065605 -1216884 + (CCCTG)n Simple_repeat Simple_repeat 1 26 0 248 300 150 25 chr12 143066044 143066204 -1216285 + L2 LINE L2 2883 3062 -251 1889 181 49 0 chr12 143066583 143066932 -1215557 - MER47A DNA MER2_type 0 366 1 2247 120 0 0 chr12 143067029 143067338 -1215151 + AluSx SINE Alu 1 309 -3 342 296 46 15 chr12 143067457 143067589 -1214900 + L2 LINE L2 3137 3313 0 1080 137 8 0 chr12 143067592 143067848 -1214641 + (TGGA)n Simple_repeat Simple_repeat 1 258 0 216 250 19 0 chr12 143067883 143067935 -1214554 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 483 87 0 0 chr12 143067960 143068029 -1214460 + (TGGA)n Simple_repeat Simple_repeat 1 69 0 216 250 19 0 chr12 143068065 143068117 -1214372 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 330 115 0 0 chr12 143068142 143068194 -1214295 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 1504 273 53 41 chr12 143068284 143069399 -1213090 - L1MD1 LINE L1 -226 6016 4873 188 232 61 37 chr12 143069925 143070007 -1212482 + MER5B DNA MER1_type 95 178 0 302 210 49 35 chr12 143070639 143070782 -1211707 + (TTGTG)n Simple_repeat Simple_repeat 5 149 0 206 150 0 17 chr12 143070806 143070866 -1211623 + (GTGTG)n Simple_repeat Simple_repeat 4 62 0 249 256 66 33 chr12 143072037 143072158 -1210331 + MIR SINE MIR 23 147 -115 504 217 108 54 chr12 143074746 143074986 -1207503 + MER45C DNA AcHobo 79 331 -622 229 294 71 0 chr12 143074997 143075082 -1207407 + MER45C DNA AcHobo 308 398 -555 605 244 18 38 chr12 143075583 143075802 -1206687 + MSTC LTR MaLR 1 238 -219 210 341 12 12 chr12 143076715 143076888 -1205601 + (GGTTG)n Simple_repeat Simple_repeat 3 175 0 206 365 0 0 chr12 143076836 143076940 -1205549 + (GGGTG)n Simple_repeat Simple_repeat 5 108 0 * 868 208 91 45 chr12 143076940 143077205 -1205284 + MSTD LTR MaLR 120 396 0 1908 237 81 5 chr12 143077925 143078515 -1203974 + L1MC3 LINE L1 7149 7783 -2 1121 152 0 0 chr12 143078901 143079066 -1203423 + AluJb SINE Alu 137 301 -11 264 224 0 0 chr12 143079096 143079163 -1203326 + (CATA)n Simple_repeat Simple_repeat 4 70 0 420 288 56 6 chr12 143079227 143079387 -1203102 - L1ME LINE L1 -297 5824 5657 * 529 263 76 15 chr12 143079377 143079575 -1202914 - L1ME4a LINE L1 -295 5826 5617 866 267 115 11 chr12 143080270 143080644 -1201845 - MER63B DNA MER1_type -4 432 20 2125 178 97 0 chr12 143081159 143081570 -1200919 - LTR47A LTR ERVL -1 451 1 2478 71 0 3 chr12 143082358 143082655 -1199834 - AluY SINE Alu -13 298 3 558 259 58 50 chr12 143083580 143083701 -1198788 + L1ME3A LINE L1 5569 5688 -482 2212 85 3 66 chr12 143083701 143084020 -1198469 + AluSq SINE Alu 1 299 -14 558 259 58 50 chr12 143084020 143084157 -1198332 + L1ME3A LINE L1 5688 5829 -341 2409 151 37 16 chr12 143084187 143084364 -1198125 - LTR56 LTR ERV1 0 445 273 2115 113 31 0 chr12 143084364 143084656 -1197833 + AluSx SINE Alu 1 301 -11 2409 151 37 16 chr12 143084656 143084914 -1197575 - LTR56 LTR ERV1 -172 273 1 496 276 40 0 chr12 143084988 143085140 -1197349 + L1ME3A LINE L1 5835 5992 -178 2191 115 16 3 chr12 143085210 143085514 -1196975 - AluSx SINE Alu -4 308 1 928 213 182 0 chr12 143085531 143085784 -1196705 + L1M4 LINE L1 5320 5618 -560 688 212 72 32 chr12 143085787 143085931 -1196558 - MLT1D LTR MaLR -3 502 365 3168 117 57 27 chr12 143085931 143086109 -1196380 + MER1A DNA MER1_type 1 172 -2528 2351 89 0 17 chr12 143086109 143086411 -1196078 + AluSx SINE Alu 1 297 -15 3168 117 57 27 chr12 143086411 143086744 -1195745 + MER1A DNA MER1_type 172 527 0 688 212 72 32 chr12 143086744 143086960 -1195529 - MLT1D LTR MaLR -140 365 80 11048 175 25 49 chr12 143088334 143090838 -1191651 + L1M2a LINE L1 10 2574 -4593 378 0 0 0 chr12 143090838 143090880 -1191609 + (CA)n Simple_repeat Simple_repeat 1 42 0 11048 175 25 49 chr12 143090880 143091113 -1191376 + L1M2a LINE L1 2574 2811 -4356 1245 202 21 98 chr12 143091113 143091239 -1191250 + AluYb8 SINE Alu 5 139 -179 230 0 33 0 chr12 143091239 143091269 -1191220 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1245 202 21 98 chr12 143091269 143091504 -1190985 + AluYb8 SINE Alu 139 318 0 11048 175 25 49 chr12 143091504 143091871 -1190618 + L1M2a LINE L1 2811 3185 -3982 1824 187 16 0 chr12 143091871 143092176 -1190313 + AluJb SINE Alu 1 310 -2 11048 175 25 49 chr12 143092176 143092883 -1189606 + L1M2a LINE L1 3185 3744 -3423 478 125 0 34 chr12 143092887 143092975 -1189514 + L1MA5 LINE L1 5748 5832 -468 2063 111 11 0 chr12 143092975 143093255 -1189234 + AluSx SINE Alu 1 283 -29 2407 136 35 33 chr12 143093442 143093671 -1188818 + L1MA5 LINE L1 5814 6041 -259 2218 83 0 35 chr12 143093671 143094026 -1188463 + AluSc SINE Alu 1 345 0 2407 136 35 33 chr12 143094026 143094279 -1188210 + L1MA5 LINE L1 6041 6298 -2 577 147 0 101 chr12 143094349 143094458 -1188031 - AluJb SINE Alu -23 289 192 1429 170 70 12 chr12 143094465 143094795 -1187694 + MER49 LTR ERV1 575 923 0 387 289 35 85 chr12 143095727 143095897 -1186592 - MER93a-int LTR ERV1 -7288 249 95 2240 197 65 7 chr12 143095897 143096343 -1186146 - MER70A LTR ERVL 0 472 1 387 289 35 85 chr12 143096343 143096432 -1186057 - MER93a-int LTR ERV1 -7442 95 3 475 218 65 35 chr12 143096436 143096606 -1185883 - MER93a LTR ERV1 0 402 228 271 206 87 33 chr12 143096589 143096681 -1185808 - MER93a LTR ERV1 -305 97 1 * 381 325 167 29 chr12 143096877 143097225 -1185264 - L2 LINE L2 -6 3307 2912 21 0 0 0 chr12 143100019 143100040 -1182449 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 143101354 143101385 -1181104 + AT_rich Low_complexity Low_complexity 1 31 0 28 61 0 0 chr12 143102912 143102961 -1179528 + AT_rich Low_complexity Low_complexity 1 49 0 843 154 0 0 chr12 143102961 143103078 -1179411 - FLAM_C SINE Alu -16 117 1 306 143 54 0 chr12 143103658 143103714 -1178775 - MER2 DNA MER2_type -20 325 267 718 195 49 37 chr12 143103714 143103878 -1178611 + MER58B DNA MER1_type 175 340 -1 2245 120 0 10 chr12 143104930 143105239 -1177250 - AluSx SINE Alu -4 308 3 199 213 149 0 chr12 143105713 143105760 -1176729 + L2 LINE L2 3257 3310 -3 196 360 163 6 chr12 143106005 143106177 -1176312 - MIR SINE MIR -10 252 54 1083 232 45 5 chr12 143106180 143106404 -1176085 - MER8 DNA MER2_type 0 239 7 542 281 25 12 chr12 143107401 143107561 -1174928 - MIR SINE MIR -10 252 91 2407 125 49 17 chr12 143108084 143108492 -1173997 - MSTA LTR MaLR 0 428 8 31 26 0 0 chr12 143108802 143108840 -1173649 + AT_rich Low_complexity Low_complexity 1 38 0 1091 165 0 6 chr12 143109490 143109660 -1172829 + AluJo SINE Alu 1 169 -143 559 259 118 44 chr12 143109782 143109876 -1172613 - MIR SINE MIR -6 256 170 2017 160 0 3 chr12 143109876 143110183 -1172306 + AluJb SINE Alu 1 306 -6 559 259 118 44 chr12 143110183 143110316 -1172173 - MIR SINE MIR -92 170 12 310 354 85 38 chr12 143110420 143110739 -1171750 - L1M4 LINE L1 -823 5323 4990 225 262 66 0 chr12 143111984 143112045 -1170444 + L3 LINE CR1 1044 1108 -469 2383 75 0 23 chr12 143113413 143113720 -1168769 - AluSx SINE Alu -12 300 1 1974 133 28 0 chr12 143114578 143114864 -1167625 + AluSx SINE Alu 4 297 -15 1700 187 23 3 chr12 143115906 143116205 -1166284 - AluJb SINE Alu -7 305 1 1775 181 10 7 chr12 143116432 143116731 -1165758 + AluJb SINE Alu 1 300 -12 719 206 0 8 chr12 143116842 143116968 -1165521 + FLAM_C SINE Alu 2 126 -17 527 230 0 9 chr12 143117144 143117257 -1165232 - L2 LINE L2 -1 3312 3201 554 111 22 0 chr12 143118413 143118503 -1163986 - 5S rRNA rRNA -29 92 1 331 247 75 63 chr12 143120237 143120331 -1162158 - MER34 LTR ERV1 0 542 444 2228 113 13 3 chr12 143120331 143120641 -1161848 + AluSp SINE Alu 1 313 0 331 247 75 63 chr12 143120641 143120720 -1161769 - MER34 LTR ERV1 -98 444 367 236 303 0 0 chr12 143120990 143121056 -1161433 - MER34C LTR ERV1 -484 101 36 305 235 0 20 chr12 143121227 143121329 -1161160 + L1M LINE L1 5312 5411 -2397 716 185 15 0 chr12 143121450 143121580 -1160909 + FLAM_C SINE Alu 1 132 -1 1143 164 2 0 chr12 143122121 143122606 -1159883 + (CAT)n Simple_repeat Simple_repeat 1 486 0 932 148 3 6 chr12 143122629 143122967 -1159522 + (CAT)n Simple_repeat Simple_repeat 1 337 0 450 304 37 37 chr12 143122967 143123181 -1159308 - MLT1J LTR MaLR -236 275 62 262 225 14 14 chr12 143123197 143123268 -1159221 - MER5A DNA MER1_type -93 96 26 699 315 23 0 chr12 143124536 143124796 -1157693 + L1ME3 LINE L1 5318 5583 -581 1080 260 113 39 chr12 143125282 143125855 -1156634 + L1ME3 LINE L1 5544 6158 -4 269 26 0 26 chr12 143126233 143126272 -1156217 + (CA)n Simple_repeat Simple_repeat 2 39 0 472 319 90 39 chr12 143126289 143126675 -1155814 - L1MC4a LINE L1 -747 5399 5034 2359 94 0 3 chr12 143126675 143126973 -1155516 - AluSg SINE Alu -13 297 1 472 319 90 39 chr12 143126973 143127378 -1155111 - L1MC4a LINE L1 -1112 5034 5044 1725 130 23 101 chr12 143127378 143127723 -1154766 - AluYb8 SINE Alu 0 318 1 472 319 90 39 chr12 143127723 143127872 -1154617 - L1MC4a LINE L1 -1101 5045 4905 524 389 78 32 chr12 143127925 143128673 -1153816 - L1MC4a LINE L1 -1310 4836 4055 1786 151 0 25 chr12 143128681 143128960 -1153529 - AluJb SINE Alu -17 295 24 2507 94 0 0 chr12 143129960 143130267 -1152222 + AluSx SINE Alu 1 307 -5 557 305 128 33 chr12 143130732 143131099 -1151390 + MLT1I LTR MaLR 8 409 0 222 271 0 0 chr12 143131539 143131679 -1150810 + (TG)n Simple_repeat Simple_repeat 1 140 0 320 270 0 4 chr12 143131690 143131964 -1150525 + (TG)n Simple_repeat Simple_repeat 1 272 0 197 297 9 63 chr12 143134226 143134337 -1148152 - MIR SINE MIR -47 215 111 791 192 6 0 chr12 143135980 143136157 -1146332 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 385 257 9 9 chr12 143136157 143136262 -1146227 + (TTCA)n Simple_repeat Simple_repeat 1 105 0 274 317 72 12 chr12 143136292 143136459 -1146030 - L2 LINE L2 -86 3227 3051 381 306 155 19 chr12 143136856 143137327 -1145162 - MLT1K LTR MaLR -28 560 26 227 188 0 0 chr12 143139535 143139583 -1142906 + GA-rich Low_complexity Low_complexity 2 49 0 264 152 104 49 chr12 143140740 143140904 -1141585 + (CACCT)n Simple_repeat Simple_repeat 3 175 0 263 153 123 37 chr12 143140930 143141093 -1141396 + (CACCT)n Simple_repeat Simple_repeat 4 180 0 293 366 0 0 chr12 143141116 143141269 -1141220 + CT-rich Low_complexity Low_complexity 2 154 0 321 26 0 0 chr12 143142599 143142637 -1139852 + (TG)n Simple_repeat Simple_repeat 2 39 0 299 192 13 0 chr12 143144175 143144253 -1138236 + (TGGA)n Simple_repeat Simple_repeat 2 80 0 213 39 0 0 chr12 143144302 143144328 -1138161 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 525 174 7 27 chr12 143144365 143144514 -1137975 + (TGGA)n Simple_repeat Simple_repeat 3 148 0 318 115 0 0 chr12 143144559 143144611 -1137878 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 201 39 0 0 chr12 143144664 143144690 -1137799 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 316 248 15 0 chr12 143144733 143144866 -1137623 + (TGGA)n Simple_repeat Simple_repeat 1 135 0 2599 65 3 0 chr12 143147653 143147960 -1134529 - AluSx SINE Alu -4 308 1 199 360 23 0 chr12 143150301 143150387 -1132102 + L2 LINE L2 3129 3216 -56 274 341 0 0 chr12 143151055 143151137 -1131352 + MIR3 SINE MIR 81 162 -46 229 317 50 10 chr12 143152552 143152653 -1129836 + L1MC/D LINE L1 5406 5510 -2298 27 49 0 0 chr12 143153551 143153592 -1128897 + AT_rich Low_complexity Low_complexity 1 41 0 246 216 97 96 chr12 143154030 143154411 -1128078 - HAL1b LINE L1 -56 1292 911 306 304 60 79 chr12 143154437 143154633 -1127856 - L1MC4a LINE L1 -1921 5887 5700 1801 123 68 20 chr12 143154633 143154925 -1127564 - AluJo SINE Alu -6 306 1 306 304 60 79 chr12 143154925 143155109 -1127380 - L1MC4a LINE L1 -2108 5700 5514 716 240 115 35 chr12 143155222 143155284 -1127205 - HAL1b LINE L1 -544 804 748 2483 78 10 0 chr12 143155284 143155590 -1126899 - AluY SINE Alu -2 309 1 716 240 115 35 chr12 143155590 143155839 -1126650 - HAL1b LINE L1 -600 748 468 422 303 182 30 chr12 143155952 143156325 -1126164 - HAL1b LINE L1 -762 586 157 483 201 42 167 chr12 143156573 143156708 -1125781 - MER58 DNA MER1_type -2144 276 126 2432 95 13 0 chr12 143156708 143157013 -1125476 - AluSg1 SINE Alu 0 309 1 483 201 42 167 chr12 143157013 143157101 -1125388 - MER58 DNA MER1_type -2294 126 88 1556 179 10 39 chr12 143157101 143157408 -1125081 + AluJo SINE Alu 1 298 -14 483 201 42 167 chr12 143157408 143157447 -1125042 - MER58 DNA MER1_type -2332 88 46 2172 139 25 14 chr12 143158548 143158908 -1123581 - THE1B LTR MaLR 0 364 1 11290 91 13 2 chr12 143158911 143160469 -1122020 - THE1B-int LTR MaLR -5 1575 1 2063 152 25 17 chr12 143160469 143160830 -1121659 - THE1B LTR MaLR 0 364 1 729 237 103 22 chr12 143162279 143162511 -1119978 - HAL1 LINE L1 -701 1806 1556 2520 50 7 7 chr12 143162569 143162866 -1119623 + AluY SINE Alu 1 297 -14 203 316 0 0 chr12 143162948 143163005 -1119484 - L2 LINE L2 -77 3236 3180 629 249 73 48 chr12 143163430 143163719 -1118770 - L2 LINE L2 -871 2443 2148 1421 116 228 4 chr12 143163953 143164203 -1118286 - AluSx SINE Alu -6 306 1 1024 241 4 12 chr12 143164778 143165027 -1117462 + Tigger5 DNA MER2_type 2075 2321 -2 313 296 97 36 chr12 143165457 143165704 -1116785 - L2 LINE L2 -4 3268 3007 1319 171 84 45 chr12 143166430 143166716 -1115773 - AluJo SINE Alu -15 297 1 25 0 0 0 chr12 143170319 143170344 -1112145 + AT_rich Low_complexity Low_complexity 1 25 0 2378 115 3 0 chr12 143170366 143170671 -1111818 - AluSx SINE Alu -6 306 1 365 235 43 43 chr12 143170935 143171050 -1111439 + MIR SINE MIR 81 195 -67 708 195 8 0 chr12 143174407 143174535 -1107954 + AluJo/FLAM SINE Alu 5 133 -169 1369 209 0 18 chr12 143174538 143174816 -1107673 + AluJb SINE Alu 1 273 -39 424 277 203 66 chr12 143174853 143175256 -1107233 + L1 LINE L1 3323 3816 -2330 2697 32 0 10 chr12 143175256 143175566 -1106923 + AluY SINE Alu 1 307 -4 424 277 203 66 chr12 143175566 143175689 -1106800 + L1 LINE L1 3816 3921 -2225 529 306 129 39 chr12 143175733 143176184 -1106305 + L1 LINE L1 4905 5407 -714 21 0 0 0 chr12 143176391 143176412 -1106077 + AT_rich Low_complexity Low_complexity 1 21 0 2194 114 0 0 chr12 143176530 143176820 -1105669 + AluSg SINE Alu 1 290 -20 285 337 10 10 chr12 143177511 143177612 -1104877 + MIR SINE MIR 75 175 -87 2040 91 4 4 chr12 143177725 143177990 -1104499 + AluSx SINE Alu 39 303 -9 977 189 0 0 chr12 143178001 143178165 -1104324 + FRAM SINE Alu 1 164 -12 2203 116 0 28 chr12 143178317 143178635 -1103854 - AluSg SINE Alu -1 309 1 216 236 91 0 chr12 143179212 143179267 -1103222 + L2 LINE L2 3213 3272 0 2412 89 0 0 chr12 143179427 143179729 -1102760 + AluY SINE Alu 1 302 -9 2389 83 3 3 chr12 143180947 143181247 -1101242 + AluSq SINE Alu 1 300 -13 1094 168 0 20 chr12 143183294 143183496 -1098993 + L1PA15 LINE L1 5874 6071 -94 2261 101 0 10 chr12 143184422 143184718 -1097771 + AluSx SINE Alu 1 293 -19 1806 57 0 5 chr12 143185179 143185434 -1097055 - AluY SINE Alu 0 327 74 1250 245 45 8 chr12 143186277 143186652 -1095837 - L1MB3 LINE L1 -26 6157 5769 2514 55 0 29 chr12 143187229 143187539 -1094950 - AluSc SINE Alu -8 301 1 1321 204 223 103 chr12 143188046 143188777 -1093712 - LTR1B LTR ERV1 -7 819 1 1871 168 7 13 chr12 143189043 143189347 -1093142 - AluJb SINE Alu -10 302 1 1921 149 3 38 chr12 143191510 143191825 -1090664 + AluSx SINE Alu 1 304 -8 214 289 144 41 chr12 143191875 143191972 -1090517 + L3 LINE CR1 1368 1474 -103 5077 35 0 2 chr12 143192847 143193445 -1089044 - L1PA4 LINE L1 -4 6151 5555 2400 90 0 16 chr12 143194201 143194513 -1087976 - AluSq SINE Alu 0 313 7 2151 102 3 3 chr12 143195463 143195786 -1086703 - AluSq SINE Alu 0 323 1 1395 197 0 43 chr12 143196069 143196368 -1086121 + AluJo SINE Alu 1 286 -26 2712 36 7 0 chr12 143196929 143197237 -1085252 - AluY SINE Alu -1 310 1 23 33 0 0 chr12 143197569 143197599 -1084890 + AT_rich Low_complexity Low_complexity 1 30 0 429 224 93 0 chr12 143197757 143197864 -1084625 + FLAM_A SINE Alu 26 142 0 23 54 0 0 chr12 143198325 143198362 -1084127 + AT_rich Low_complexity Low_complexity 1 37 0 2310 108 0 0 chr12 143198604 143198899 -1083590 + AluSx SINE Alu 6 300 -12 2274 65 43 0 chr12 143199210 143199488 -1083001 + AluY SINE Alu 1 290 -21 270 0 0 0 chr12 143199493 143199523 -1082966 + (TA)n Simple_repeat Simple_repeat 1 30 0 321 221 0 0 chr12 143251078 143251146 -1031343 - MLT1I LTR MaLR -1 408 341 2102 141 30 25 chr12 143251194 143251556 -1030933 + THE1B LTR MaLR 1 364 0 250 315 74 27 chr12 143251852 143252001 -1030488 - MIR SINE MIR -87 175 20 340 333 16 0 chr12 143252306 143252435 -1030054 - L1MC/D LINE L1 -2043 5765 5635 960 173 0 0 chr12 143252586 143252959 -1029530 + (CACCAT)n Simple_repeat Simple_repeat 1 373 0 915 183 0 0 chr12 143252987 143253167 -1029322 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 1056 161 8 21 chr12 143253196 143253735 -1028754 + (CACCAT)n Simple_repeat Simple_repeat 1 532 0 207 313 72 0 chr12 143253764 143253847 -1028642 - MIR SINE MIR -4 258 170 2635 57 0 0 chr12 143253915 143254211 -1028278 + AluY SINE Alu 1 296 -15 563 289 87 14 chr12 143254272 143254490 -1027999 - MIR SINE MIR -7 255 22 284 316 107 15 chr12 143256936 143257132 -1025357 - MLT1L LTR MaLR -34 581 368 1334 202 84 16 chr12 143257153 143257475 -1025014 + MER2 DNA MER2_type 1 344 0 463 331 74 32 chr12 143257490 143257774 -1024715 - MLT1K LTR MaLR -290 298 3 194 0 39 0 chr12 143257908 143257934 -1024555 + (TG)n Simple_repeat Simple_repeat 2 28 0 313 313 43 0 chr12 143259581 143259696 -1022793 + MIR SINE MIR 81 200 -62 880 234 19 10 chr12 143261468 143261677 -1020812 - MER90 LTR ERV1 -39 575 365 762 195 98 66 chr12 143261678 143261930 -1020559 + MSTD LTR MaLR 1 353 -43 2060 137 10 7 chr12 143261930 143262229 -1020260 - AluSx SINE Alu -12 300 1 762 195 98 66 chr12 143262229 143262275 -1020214 + MSTD LTR MaLR 353 396 0 972 268 24 0 chr12 143262275 143262566 -1019923 - MER90 LTR ERV1 -246 368 71 466 254 59 0 chr12 143262573 143262691 -1019798 + L1MD2 LINE L1 5837 5961 -398 501 216 144 11 chr12 143263006 143263187 -1019302 - MLT1K LTR MaLR -303 285 81 260 70 0 0 chr12 143263489 143263532 -1018957 - L1MA7 LINE L1 0 6291 6249 991 213 69 29 chr12 143263874 143263949 -1018540 + MLT1A1 LTR MaLR 77 148 -217 2516 123 52 0 chr12 143263949 143264356 -1018133 + MSTA LTR MaLR 1 428 0 991 213 69 29 chr12 143264356 143264557 -1017932 + MLT1A1 LTR MaLR 148 364 -1 1763 148 7 30 chr12 143265378 143265682 -1016807 - AluJb SINE Alu 0 312 16 2086 130 3 0 chr12 143266429 143266721 -1015768 + AluJo SINE Alu 1 293 -19 529 254 55 22 chr12 143267223 143267404 -1015085 - Charlie8 DNA MER1_type -2230 187 1 1076 256 75 104 chr12 143268030 143268841 -1013648 - L1MEc LINE L1 -3662 3279 2527 1823 189 8 11 chr12 143268841 143269207 -1013282 - MLT1A1 LTR MaLR 0 365 1 1076 256 75 104 chr12 143269207 143269501 -1012988 - L1MEc LINE L1 -4414 2527 2226 5582 85 10 0 chr12 143269530 143270306 -1012183 - L1PA11 LINE L1 -1 6173 5390 1995 140 66 6 chr12 143270304 143270690 -1011799 + L1P LINE L1 5000 5406 -748 * 270 85 0 22 chr12 143270719 143270772 -1011717 + L1P LINE L1 5346 5397 -759 * 623 239 102 25 chr12 143270767 143271051 -1011438 - L1MEc LINE L1 -4863 2078 1773 387 200 40 72 chr12 143271101 143271226 -1011263 - L1MEc LINE L1 -5182 1241 1121 9883 186 35 28 chr12 143271670 143271913 -1010576 - L1 LINE L1 -1788 4540 4300 2502 62 3 0 chr12 143271913 143272203 -1010286 - AluY SINE Alu -20 291 1 1830 145 54 0 chr12 143272206 143272482 -1010007 - AluSx SINE Alu -16 296 6 9883 186 35 28 chr12 143272482 143275003 -1007486 - L1 LINE L1 -2029 4299 1796 2379 105 22 8 chr12 143275003 143275366 -1007123 - L1PA16 LINE L1 -1 6165 5798 9883 186 35 28 chr12 143275366 143275698 -1006791 - L1 LINE L1 -4532 1796 1468 3917 174 63 63 chr12 143275698 143276652 -1005837 + LTR13 LTR ERVK 1 954 0 9883 186 35 28 chr12 143276652 143276720 -1005769 - L1 LINE L1 -4860 1468 1402 1931 131 40 40 chr12 143276720 143277095 -1005394 - THE1C LTR MaLR 0 375 1 9883 186 35 28 chr12 143277095 143277210 -1005279 - L1 LINE L1 -4926 1402 1289 1600 181 3 33 chr12 143277210 143277513 -1004976 + AluJb SINE Alu 1 294 -18 9883 186 35 28 chr12 143277513 143278739 -1003750 - L1 LINE L1 -5039 1289 16 918 114 41 0 chr12 143278747 143278870 -1003619 - AluSg/x SINE Alu -28 284 157 197 206 44 44 chr12 143279209 143279277 -1003212 - MIR SINE MIR -37 225 158 245 289 48 82 chr12 143279359 143279712 -1002777 - L2 LINE L2 -90 3223 2883 2803 78 75 15 chr12 143279872 143279907 -1002582 - MLT2A1 LTR ERVL -7 437 406 231 61 0 0 chr12 143279907 143279940 -1002549 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 414 53 0 0 chr12 143279939 143279996 -1002493 + (TA)n Simple_repeat Simple_repeat 2 58 0 2803 78 75 15 chr12 143279940 143280372 -1002117 - MLT2A1 LTR ERVL -38 406 1 197 363 167 10 chr12 143280375 143280477 -1002012 - L2 LINE L2 -28 3285 3168 181 227 55 55 chr12 143280690 143280741 -1001748 - L2 LINE L2 -422 2892 2842 1896 173 173 16 chr12 143280741 143281227 -1001262 + MER68 LTR ERV1 1 562 0 181 227 55 55 chr12 143281227 143281285 -1001204 - L2 LINE L2 -471 2843 2783 377 289 62 0 chr12 143282590 143282718 -999771 - L2 LINE L2 0 3272 3137 1057 179 22 6 chr12 143283689 143283868 -998621 + MER5A DNA MER1_type 1 182 -7 206 260 0 20 chr12 143284512 143284562 -997927 - L2 LINE L2 -1313 2001 1953 184 365 78 23 chr12 143285168 143285513 -996976 - L2 LINE L2 -1026 2288 1925 612 276 58 19 chr12 143286177 143286434 -996055 + MLT1J LTR MaLR 238 504 -7 334 208 14 0 chr12 143286570 143286642 -995847 - MER5A DNA MER1_type -108 81 9 207 0 0 0 chr12 143287496 143287519 -994970 + (T)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr12 143287554 143287579 -994910 + AT_rich Low_complexity Low_complexity 1 25 0 16922 36 0 0 chr12 143287584 143290373 -992116 + L1PA5 LINE L1 3357 6150 -4 236 274 54 74 chr12 143290637 143290933 -991556 - L1ME4a LINE L1 -15 6106 5817 186 278 0 69 chr12 143290933 143291005 -991484 + MER5B DNA MER1_type 14 80 -98 305 320 31 8 chr12 143291346 143291474 -991015 - L2 LINE L2 0 3272 3142 805 176 8 0 chr12 143291476 143291606 -990883 + MER2 DNA MER2_type 1 131 -214 430 169 0 34 chr12 143291606 143291695 -990794 - Tigger5 DNA MER2_type 0 2323 2238 341 203 0 0 chr12 143291756 143291825 -990664 - Tigger5 DNA MER2_type -4 2319 2251 292 204 0 0 chr12 143291794 143291848 -990641 - Tigger5 DNA MER2_type -2268 55 2 * 513 96 0 0 chr12 143291849 143291922 -990567 + MER2 DNA MER2_type 130 202 -143 650 208 0 97 chr12 143291922 143292066 -990423 + FLAM_A SINE Alu 1 130 -12 677 197 33 20 chr12 143292066 143292218 -990271 + MER2 DNA MER2_type 191 344 -1 188 211 26 0 chr12 143292591 143292629 -989860 - L2 LINE L2 -21 3292 3254 201 152 0 0 chr12 143293193 143293226 -989263 + (TGGA)n Simple_repeat Simple_repeat 4 36 0 619 263 34 34 chr12 143293656 143293831 -988658 + MER5B DNA MER1_type 3 177 -1 730 265 131 55 chr12 143294160 143294617 -987872 + MLT1K LTR MaLR 90 581 -7 567 270 25 87 chr12 143294744 143294985 -987504 + MIR SINE MIR 34 259 -3 322 299 172 26 chr12 143295021 143295322 -987167 + L2 LINE L2 2922 3271 -1 185 128 0 26 chr12 143297806 143297845 -984644 + (TG)n Simple_repeat Simple_repeat 2 39 0 233 190 35 0 chr12 143299359 143299417 -983072 - MLT1K LTR MaLR -340 248 189 315 276 39 16 chr12 143300768 143300895 -981594 + MLT1I LTR MaLR 250 379 -30 24 0 0 0 chr12 143301190 143301214 -981275 + AT_rich Low_complexity Low_complexity 1 24 0 318 290 55 35 chr12 143301788 143301933 -980556 - MIR SINE MIR -3 259 112 601 308 14 24 chr12 143302208 143302419 -980070 - L2 LINE L2 0 3313 3105 183 204 0 0 chr12 143302429 143302478 -980011 + (TG)n Simple_repeat Simple_repeat 1 49 0 410 326 0 0 chr12 143302492 143302639 -979850 + (TG)n Simple_repeat Simple_repeat 1 147 0 495 195 34 47 chr12 143302901 143303050 -979439 - L1MA10 LINE L1 0 6334 6188 1150 263 26 12 chr12 143303075 143303414 -979075 + LTR16C LTR ERVL 146 489 -2 267 314 19 19 chr12 143303415 143303520 -978969 - L2 LINE L2 -775 2539 2435 1845 231 88 64 chr12 143304258 143304869 -977620 + MLT1E2 LTR MaLR 1 626 0 184 313 0 25 chr12 143305680 143305760 -976729 - L2 LINE L2 0 3313 3236 1386 179 108 15 chr12 143305920 143306245 -976244 + MLT1A1 LTR MaLR 11 365 0 754 209 43 83 chr12 143306888 143307141 -975348 - MIR SINE MIR -2 260 18 189 0 0 0 chr12 143307528 143307549 -974940 + (TC)n Simple_repeat Simple_repeat 2 22 0 4278 117 90 47 chr12 143308437 143309189 -973300 - LTR1 LTR ERV1 0 785 1 222 37 0 0 chr12 143309890 143309917 -972572 + (CAGG)n Simple_repeat Simple_repeat 1 27 0 286 253 276 0 chr12 143310366 143310453 -972036 - L2 LINE L2 -251 3062 2952 259 297 59 0 chr12 143310546 143310664 -971825 + LTR67 LTR ERVL 38 162 -395 197 254 36 0 chr12 143310983 143311038 -971451 + MER5A DNA MER1_type 48 104 -85 227 231 198 11 chr12 143311169 143311260 -971229 - L2 LINE L2 -555 2759 2652 219 304 0 10 chr12 143311326 143311428 -971061 + (CA)n Simple_repeat Simple_repeat 2 102 0 189 254 17 51 chr12 143312964 143313023 -969466 - L2 LINE L2 0 3272 3216 605 237 69 12 chr12 143313031 143313204 -969285 - MLT1K LTR MaLR -5 583 401 608 313 77 45 chr12 143313254 143313656 -968833 - MLT1K LTR MaLR -27 561 147 675 212 26 0 chr12 143313721 143313872 -968617 - L1MD1 LINE L1 -3 6239 6085 270 81 0 0 chr12 143314739 143314776 -967713 + (TG)n Simple_repeat Simple_repeat 1 37 0 224 224 35 0 chr12 143314828 143314886 -967603 - MIR SINE MIR -90 172 113 316 293 6 0 chr12 143315167 143315329 -967160 + (CAT)n Simple_repeat Simple_repeat 1 163 0 880 146 0 32 chr12 143315333 143315518 -966971 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 183 156 0 0 chr12 143315516 143315548 -966941 + (CAT)n Simple_repeat Simple_repeat 1 32 0 * 2011 88 25 22 chr12 143315590 143315864 -966625 - AluSx SINE Alu 0 312 38 1568 178 12 38 chr12 143315935 143316255 -966234 - AluJo SINE Alu 0 312 1 360 306 196 0 chr12 143316865 143317074 -965415 - MIR SINE MIR -6 256 7 748 265 79 47 chr12 143317186 143317593 -964896 - MLT1K LTR MaLR -11 577 158 346 248 25 16 chr12 143317791 143317912 -964577 + MLT1I LTR MaLR 86 207 -202 334 276 48 21 chr12 143318846 143318991 -963498 + MIR SINE MIR 22 170 -92 24 0 0 0 chr12 143322310 143322334 -960155 + AT_rich Low_complexity Low_complexity 1 24 0 374 300 20 13 chr12 143324837 143324987 -957502 + MIR SINE MIR 111 261 -1 1913 146 3 13 chr12 143325060 143325368 -957121 + AluJo SINE Alu 1 305 -7 512 301 22 11 chr12 143325991 143326217 -956272 + MLT1J1 LTR MaLR 217 450 0 1365 100 67 9 chr12 143326827 143327037 -955452 - MER30 DNA MER1_type -8 222 1 204 125 0 0 chr12 143327347 143327379 -955110 + (TG)n Simple_repeat Simple_repeat 2 33 0 16085 138 37 30 chr12 143327382 143329329 -953160 - Tigger2 DNA MER2_type 0 2718 746 186 43 0 0 chr12 143329329 143329352 -953137 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 16085 138 37 30 chr12 143329352 143330103 -952386 - Tigger2 DNA MER2_type -1972 746 2 6652 124 22 19 chr12 143330111 143331080 -951409 + HSMAR2 DNA Mariner 2 976 -326 2098 118 3 13 chr12 143331080 143331384 -951105 - AluSg SINE Alu -9 301 1 6652 124 22 19 chr12 143331384 143331522 -950967 + HSMAR2 DNA Mariner 976 1112 -190 325 250 120 0 chr12 143335753 143335945 -946544 - LTR33A LTR ERVL -43 480 266 406 281 25 8 chr12 143336284 143336479 -946010 + MER68 LTR ERV1 227 477 -85 630 138 0 0 chr12 143336847 143336956 -945533 + (CA)n Simple_repeat Simple_repeat 2 110 0 246 329 34 20 chr12 143337754 143337903 -944586 + L2 LINE L2 2910 3060 -253 227 299 52 0 chr12 143338272 143338349 -944140 + MER69 DNA AcHobo 2445 2525 -1 423 0 0 0 chr12 143338466 143338513 -943976 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 32 67 0 0 chr12 143338576 143338636 -943853 + AT_rich Low_complexity Low_complexity 1 60 0 383 309 166 28 chr12 143339043 143339260 -943229 - MIR SINE MIR -10 252 6 619 313 39 26 chr12 143339362 143339592 -942897 + MIR SINE MIR 15 247 -15 911 98 79 37 chr12 143339756 143339780 -942709 + LTR34 LTR ERV1 1 23 -676 2155 107 0 3 chr12 143339780 143340088 -942401 + AluSx SINE Alu 1 307 -5 911 98 79 37 chr12 143340088 143340227 -942262 + LTR34 LTR ERV1 23 171 -528 5936 237 56 24 chr12 143340633 143341285 -941204 + L1MB7 LINE L1 2642 3272 -2912 2048 125 7 3 chr12 143341285 143341590 -940899 + AluSx SINE Alu 1 306 -6 5936 237 56 24 chr12 143341590 143344312 -938177 + L1MB7 LINE L1 3272 6165 -19 261 242 50 42 chr12 143345572 143345692 -936797 + MLT1K LTR MaLR 366 486 -102 3276 155 21 72 chr12 143350288 143350999 -931490 - LTR8 LTR ERV1 -1 690 16 308 310 116 8 chr12 143351005 143351134 -931355 + MIR SINE MIR 88 230 -32 455 371 54 7 chr12 143353208 143353650 -928839 - L1 LINE L1 -771 5375 4913 406 302 62 42 chr12 143354599 143354791 -927698 - MER63A DNA MER1_type -9 201 6 271 274 53 18 chr12 143354796 143354909 -927580 + MIR SINE MIR 107 223 -39 237 200 33 0 chr12 143355521 143355581 -926908 + MER53 DNA DNA 13 74 -115 359 294 111 7 chr12 143356202 143356355 -926134 + MLT1K LTR MaLR 11 179 -409 2867 96 0 0 chr12 143356542 143356905 -925584 + THE1B LTR MaLR 2 364 0 528 305 21 5 chr12 143357837 143358024 -924465 + L1M4 LINE L1 4589 4778 -1368 321 290 62 71 chr12 143358238 143358462 -924027 - MER41E LTR ERV1 -236 276 55 250 352 0 0 chr12 143358568 143358659 -923830 + L1M4 LINE L1 4773 4863 -1283 201 350 0 27 chr12 143358837 143359020 -923469 + G-rich Low_complexity Low_complexity 1 178 0 201 350 0 27 chr12 143359311 143359494 -922995 + G-rich Low_complexity Low_complexity 1 178 0 371 299 56 7 chr12 143360078 143360222 -922267 - MER58B DNA MER1_type -3 338 188 232 309 29 43 chr12 143360771 143360910 -921579 + LTR67 LTR ERVL 414 550 -7 344 188 0 47 chr12 143361054 143361182 -921307 + CT-rich Low_complexity Low_complexity 3 124 0 523 331 119 3 chr12 143363042 143363377 -919112 - L2 LINE L2 -1 3312 2939 1073 235 28 46 chr12 143363413 143363925 -918564 + L1MCc LINE L1 1208 1713 -4887 539 269 44 19 chr12 143364105 143364265 -918224 + MIR SINE MIR 80 243 -19 315 65 0 0 chr12 143364279 143364325 -918164 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 463 305 148 24 chr12 143364486 143364696 -917793 - MIR SINE MIR 0 262 27 2623 190 24 66 chr12 143364701 143365339 -917150 - LTR9 LTR ERV1 -1 611 1 3045 167 19 21 chr12 143365423 143365998 -916491 + MER4B LTR ERV1 1 574 -36 1683 107 14 64 chr12 143366858 143367139 -915350 - AluSq SINE Alu -8 305 39 2188 108 3 13 chr12 143367811 143368127 -914362 + AluSp SINE Alu 1 313 0 686 243 25 30 chr12 143369324 143369526 -912963 - MLT1H1 LTR MaLR -8 547 347 192 340 78 0 chr12 143370258 143370361 -912128 - L2 LINE L2 0 3272 3162 288 274 111 67 chr12 143370460 143370608 -911881 + Charlie8 DNA MER1_type 210 371 -2046 216 0 0 0 chr12 143370608 143370632 -911857 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 288 274 111 67 chr12 143370632 143370691 -911798 + Charlie8 DNA MER1_type 371 426 -1991 364 271 79 7 chr12 143370729 143370869 -911620 + MIR SINE MIR 14 163 -99 915 105 0 0 chr12 143370894 143371018 -911471 - FLAM_C SINE Alu -19 124 1 689 265 112 0 chr12 143371145 143371405 -911084 - MER113 DNA MER1_type? -228 293 5 489 266 4 3 chr12 143371413 143371543 -910946 - MIR3 SINE MIR -52 156 25 630 164 13 13 chr12 143371581 143371733 -910756 + GA-rich Low_complexity Low_complexity 3 154 0 468 75 30 0 chr12 143571754 143571821 -710668 + MER41B LTR ERV1 567 635 0 1111 235 62 53 chr12 143572818 143573471 -709018 + MLT1E1 LTR MaLR 22 638 -16 2466 124 25 0 chr12 143573723 143574078 -708411 + THE1B LTR MaLR 1 364 0 10145 99 54 3 chr12 143574078 143575576 -706913 + THE1B-int LTR MaLR 1 1574 -6 2523 104 28 0 chr12 143575581 143575935 -706554 + THE1B LTR MaLR 1 364 0 203 284 198 17 chr12 143576272 143576388 -706101 + L2 LINE L2 3136 3272 0 231 296 105 65 chr12 143576915 143577192 -705297 - L2 LINE L2 -96 3176 2889 294 164 0 0 chr12 143577251 143577306 -705183 + (TG)n Simple_repeat Simple_repeat 1 55 0 188 213 85 0 chr12 143577368 143577415 -705074 + MER5A DNA MER1_type 20 70 -119 190 324 27 0 chr12 143577493 143577567 -704922 - L2 LINE L2 -686 2628 2553 232 217 8 8 chr12 143577910 143578039 -704450 + (AGGTG)n Simple_repeat Simple_repeat 3 131 0 248 270 14 14 chr12 143579202 143579276 -703213 + Charlie8 DNA MER1_type 84 157 -2260 269 274 49 20 chr12 143580501 143580603 -701886 + MIR SINE MIR 48 152 -56 421 275 194 31 chr12 143580936 143581194 -701295 - MLT1K LTR MaLR -6 582 283 456 332 58 8 chr12 143581346 143581587 -700902 + MER41B LTR ERV1 175 427 -208 2280 70 0 3 chr12 143581588 143581888 -700601 - AluY SINE Alu -12 299 1 2186 100 0 10 chr12 143581896 143582195 -700294 - AluSg SINE Alu -14 296 1 331 297 58 14 chr12 143583568 143583706 -698783 + MIR SINE MIR 29 172 -90 278 226 139 78 chr12 143583710 143583825 -698664 - MLT1L LTR MaLR -12 603 455 244 257 43 0 chr12 143583889 143583959 -698530 - MER81 DNA DNA -20 94 22 414 278 17 9 chr12 143584076 143584191 -698298 - MLT1L LTR MaLR -358 257 142 353 266 129 0 chr12 143585967 143586091 -696398 + MER5A DNA MER1_type 2 141 -48 902 113 0 0 chr12 143586364 143586488 -696001 + FLAM_C SINE Alu 1 124 -19 364 271 79 7 chr12 143586513 143586653 -695836 - MIR SINE MIR -99 163 14 248 200 0 0 chr12 143586691 143586741 -695748 - Charlie8 DNA MER1_type -1991 426 377 216 0 0 0 chr12 143586750 143586774 -695715 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 192 340 78 0 chr12 143587021 143587124 -695365 + L2 LINE L2 3162 3272 0 686 243 25 30 chr12 143587856 143588058 -694431 + MLT1H1 LTR MaLR 347 547 -8 2190 115 3 3 chr12 143589182 143589495 -692994 - AluSp SINE Alu 0 313 1 1699 106 14 64 chr12 143590167 143590450 -692039 + AluSq SINE Alu 39 307 -6 3063 162 19 21 chr12 143591310 143591885 -690604 - MER4B LTR ERV1 -36 574 1 2589 193 24 66 chr12 143591969 143592607 -689882 + LTR9 LTR ERV1 1 611 -1 463 305 148 24 chr12 143592612 143592822 -689667 + MIR SINE MIR 27 262 0 315 65 0 0 chr12 143592983 143593029 -689460 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 539 269 44 19 chr12 143593043 143593203 -689286 - MIR SINE MIR -19 243 80 1063 235 28 46 chr12 143593383 143593895 -688594 - L1MCc LINE L1 -4887 1536 1208 523 331 119 3 chr12 143593931 143594266 -688223 + L2 LINE L2 2939 3312 -1 344 188 0 47 chr12 143596125 143596253 -686236 + GA-rich Low_complexity Low_complexity 3 124 0 232 309 29 43 chr12 143596397 143596536 -685953 - LTR67 LTR ERVL -7 550 414 23 68 0 0 chr12 143797370 143797414 -485075 + AT_rich Low_complexity Low_complexity 1 44 0 1738 180 101 19 chr12 143797423 143797840 -484649 - MLT1E2 LTR MaLR 0 626 176 2025 118 20 3 chr12 143798627 143798923 -483566 - AluSx SINE Alu -11 301 1 1223 126 50 20 chr12 143799272 143799471 -483018 + AluSx SINE Alu 1 205 -107 2946 221 66 34 chr12 143799571 143799852 -482637 - L1MEc LINE L1 -670 5577 5306 2197 69 52 7 chr12 143799852 143800140 -482349 - AluSx SINE Alu -11 301 1 2946 221 66 34 chr12 143800140 143801402 -481087 - L1MEc LINE L1 -941 5306 380 422 237 15 30 chr12 143801604 143801735 -480754 + L1MEc LINE L1 11 139 -6257 469 198 31 0 chr12 143801736 143801832 -480657 + MIR SINE MIR 139 237 -25 24 0 0 0 chr12 143801834 143801858 -480631 + AT_rich Low_complexity Low_complexity 1 24 0 1334 180 15 94 chr12 143801888 143802054 -480435 - AluJo SINE Alu -10 302 173 2144 152 3 0 chr12 143802054 143802364 -480125 - AluJb SINE Alu -1 311 1 1334 180 15 94 chr12 143802364 143802525 -479964 - AluJo SINE Alu -139 173 1 302 378 157 7 chr12 143802554 143802853 -479636 + L2 LINE L2 2491 2834 -480 210 343 76 19 chr12 143803143 143803248 -479241 + L3 LINE CR1 560 670 -907 380 295 8 33 chr12 143803432 143803554 -478935 - L2 LINE L2 0 3313 3195 458 330 59 17 chr12 143803559 143803798 -478691 + L3 LINE CR1 1177 1425 -152 533 240 155 0 chr12 143803798 143803927 -478562 - AluJo SINE Alu -81 231 83 222 248 8 77 chr12 143804116 143804233 -478256 - MER5B DNA MER1_type 0 178 70 420 202 67 134 chr12 143805018 143805116 -477373 + L1MC5 LINE L1 7542 7645 -316 583 179 16 49 chr12 143805116 143805239 -477250 - FLAM_A SINE Alu -11 122 4 420 202 67 134 chr12 143805239 143805393 -477096 + L1MC5 LINE L1 7645 7777 -184 21 0 0 0 chr12 143806085 143806106 -476383 + AT_rich Low_complexity Low_complexity 1 21 0 2200 88 44 0 chr12 143806144 143806439 -476050 + AluY SINE Alu 1 308 -3 1693 153 12 47 chr12 143806469 143806753 -475736 + AluSx SINE Alu 1 274 -38 183 80 0 0 chr12 143806753 143806778 -475711 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1693 153 12 47 chr12 143806778 143806813 -475676 + AluSx SINE Alu 274 309 -3 2228 71 37 14 chr12 143806903 143807198 -475291 - AluSg1 SINE Alu -7 302 1 738 277 173 36 chr12 143807280 143808089 -474400 + HAL1 LINE L1 1394 2313 -194 2069 128 0 6 chr12 143808283 143808596 -473893 + AluSx SINE Alu 1 311 -1 882 110 193 0 chr12 143808604 143808749 -473740 + AluSc SINE Alu 131 303 -6 2316 89 3 3 chr12 143809153 143809456 -473033 + AluSp SINE Alu 1 303 -10 308 283 175 46 chr12 143810252 143810577 -471912 - L1M2 LINE L1 -5613 1236 870 1323 95 0 0 chr12 143812203 143812372 -470117 - AluSq SINE Alu -13 300 132 266 29 0 0 chr12 143812426 143812461 -470028 + AluSp/q SINE Alu 258 292 -11 355 182 17 0 chr12 143812999 143813077 -469412 - L1ME2 LINE L1 0 6166 6083 2182 200 52 44 chr12 143813765 143813952 -468537 + MLT1D LTR MaLR 1 185 -320 2177 96 0 45 chr12 143813952 143814265 -468224 + AluSx SINE Alu 1 299 -13 2182 200 52 44 chr12 143814265 143814578 -467911 + MLT1D LTR MaLR 185 505 0 2617 227 58 38 chr12 143817248 143817994 -464495 - L1ME1 LINE L1 -105 6455 5725 1816 102 12 99 chr12 143817994 143818328 -464161 - AluSx SINE Alu -7 305 1 2617 227 58 38 chr12 143818328 143818496 -463993 - L1ME1 LINE L1 -835 5725 5562 2084 145 0 0 chr12 143818496 143818807 -463682 - AluSx SINE Alu -1 311 1 2617 227 58 38 chr12 143818807 143818928 -463561 - L1ME1 LINE L1 -998 5562 5396 804 215 8 48 chr12 143818926 143819138 -463351 - L1ME1 LINE L1 -3698 2842 2640 * 2366 83 3 0 chr12 143819138 143819438 -463051 - AluSp SINE Alu -12 301 1 804 215 8 48 chr12 143819438 143819476 -463013 - L1ME1 LINE L1 -3900 2640 2602 1346 150 18 18 chr12 143819477 143819717 -462772 - AluJo SINE Alu 0 303 64 2100 146 3 0 chr12 143819739 143820041 -462448 - AluJb SINE Alu -7 305 3 1807 252 72 28 chr12 143820076 143820850 -461639 - L1ME1 LINE L1 -3963 2577 1770 25 0 0 0 chr12 143821150 143821175 -461314 + AT_rich Low_complexity Low_complexity 1 25 0 2370 100 0 0 chr12 143821756 143822057 -460432 + AluSc SINE Alu 1 301 -8 2200 118 0 3 chr12 143822812 143823108 -459381 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 143823122 143823150 -459339 + AT_rich Low_complexity Low_complexity 1 28 0 1735 196 98 36 chr12 143824099 143824539 -457950 - MLT1C LTR MaLR 0 467 1 2300 108 7 3 chr12 143825187 143825492 -456997 + AluSq SINE Alu 1 306 -7 919 226 80 29 chr12 143828425 143828664 -453825 + MIR SINE MIR 12 262 0 588 219 41 14 chr12 143829429 143829575 -452914 + MIR SINE MIR 113 262 0 470 282 140 17 chr12 143829578 143830000 -452489 + L1ME4a LINE L1 5648 6121 0 1489 178 58 7 chr12 143830046 143830321 -452168 + AluJo SINE Alu 1 289 -23 2260 87 0 0 chr12 143830359 143830635 -451854 + AluSx SINE Alu 1 276 -36 652 200 41 14 chr12 143830652 143830797 -451692 + L1M4 LINE L1 4254 4402 -1744 1155 152 80 6 chr12 143830799 143831118 -451371 - LTR46 LTR ERV1 -1 459 1 858 182 21 78 chr12 143831120 143831362 -451127 + L1M4 LINE L1 4348 4575 -1571 2415 71 3 7 chr12 143831362 143831671 -450818 - AluY SINE Alu -3 308 1 863 180 47 0 chr12 143831831 143832042 -450447 + L1MB4 LINE L1 1460 1680 -5170 555 202 17 17 chr12 143832045 143832164 -450325 - Tigger1 DNA MER2_type 0 2418 2300 3147 156 7 82 chr12 143832165 143832917 -449572 + L1M4c LINE L1 1 808 -6041 2111 112 21 0 chr12 143832917 143833203 -449286 + AluSx SINE Alu 1 292 -20 3147 156 7 82 chr12 143833203 143833239 -449250 + L1M4c LINE L1 808 845 -6004 1463 158 22 0 chr12 143833239 143833467 -449022 + AluJb SINE Alu 1 233 -79 3147 156 7 82 chr12 143833467 143833660 -448829 + L1M4c LINE L1 845 1728 -5121 1248 122 20 57 chr12 143833653 143833900 -448589 + L1M4c LINE L1 2474 2711 -4138 * 3986 127 38 2 chr12 143833900 143834499 -447990 - Tigger1 DNA MER2_type -665 1753 1133 738 187 53 23 chr12 143834499 143834670 -447819 + L1MB4 LINE L1 2140 2315 -4535 2378 65 17 0 chr12 143834698 143834988 -447501 + AluY SINE Alu 1 295 -16 517 232 22 14 chr12 143834989 143835127 -447362 + L1MB4 LINE L1 2475 2613 -4237 * 2963 203 51 26 chr12 143835108 143835554 -446935 + L1MB4 LINE L1 5320 5788 -1092 754 200 0 15 chr12 143835554 143835689 -446800 + FLAM_C SINE Alu 1 133 0 2963 203 51 26 chr12 143835689 143836088 -446401 + L1MB4 LINE L1 5788 6176 -704 887 179 113 15 chr12 143836117 143836312 -446177 - LTR47A LTR ERVL 0 452 239 3480 164 48 14 chr12 143836539 143837199 -445290 + L1MB4 LINE L1 6194 6876 -6 910 142 7 14 chr12 143837438 143837579 -444910 + AluJo SINE Alu 3 142 -170 200 146 73 0 chr12 143837579 143837634 -444855 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 914 164 0 0 chr12 143837636 143837770 -444719 + AluJo SINE Alu 149 282 -30 508 234 86 35 chr12 143837795 143837992 -444497 + L1M4c LINE L1 2933 3139 -3709 441 259 95 13 chr12 143838054 143838212 -444277 + MLT1J2 LTR MaLR 1 171 -279 1070 219 134 8 chr12 143838314 143838645 -443844 + LTR37A LTR ERV1 19 398 -28 1896 151 3 26 chr12 143838645 143838956 -443533 - AluJb SINE Alu -8 304 1 1070 219 134 8 chr12 143838956 143838975 -443514 + LTR37A LTR ERV1 398 413 -13 1745 182 78 72 chr12 143839176 143839248 -443241 - L1MB8 LINE L1 -17 6161 6091 2363 85 0 19 chr12 143839248 143839565 -442924 + AluY SINE Alu 1 311 0 1745 182 78 72 chr12 143839565 143839611 -442878 - L1MB8 LINE L1 -87 6091 6047 1990 114 39 0 chr12 143839611 143839737 -442752 + AluSx SINE Alu 1 121 -191 333 0 0 0 chr12 143839737 143839774 -442715 + (CA)n Simple_repeat Simple_repeat 2 38 0 1990 114 39 0 chr12 143839774 143839928 -442561 + AluSx SINE Alu 121 292 -20 1745 182 78 72 chr12 143839928 143840294 -442195 - L1MB8 LINE L1 -131 6047 5670 990 163 12 30 chr12 143840294 143840460 -442029 - FRAM SINE Alu -1 165 3 1745 182 78 72 chr12 143840460 143840485 -442004 - L1MB8 LINE L1 -508 5670 5647 1425 211 4 0 chr12 143840501 143840767 -441722 + AluJo SINE Alu 33 299 -13 28 0 0 0 chr12 143840767 143840795 -441694 + AT_rich Low_complexity Low_complexity 1 28 0 959 146 13 13 chr12 143840838 143840996 -441493 - AluJo SINE Alu -50 262 105 1522 192 120 93 chr12 143841277 143841412 -441077 + Charlie1 DNA MER1_type 1422 1552 -1209 1696 174 14 3 chr12 143841412 143841705 -440784 - AluJo SINE Alu -14 298 3 1522 192 120 93 chr12 143841705 143841802 -440687 + Charlie1 DNA MER1_type 1552 1645 -1116 2433 62 0 3 chr12 143841802 143842094 -440395 - AluY SINE Alu -20 291 1 1522 192 120 93 chr12 143842094 143842385 -440104 + Charlie1 DNA MER1_type 1645 1960 -801 1118 322 29 106 chr12 143842396 143843632 -438857 + L1PB4 LINE L1 12 1135 -5714 2845 149 5 23 chr12 143843632 143844028 -438461 + MSTA LTR MaLR 1 390 -38 2020 120 7 7 chr12 143844028 143844327 -438162 - AluSc SINE Alu -10 299 1 2845 149 5 23 chr12 143844327 143844366 -438123 + MSTA LTR MaLR 390 428 0 1118 322 29 106 chr12 143844366 143844484 -438005 + L1PB4 LINE L1 1135 1261 -5588 * 14993 192 21 21 chr12 143844478 143848301 -434188 + L1PB4 LINE L1 1464 5285 -1573 2280 113 0 0 chr12 143848301 143848611 -433878 + AluSg SINE Alu 1 310 0 14993 192 21 21 chr12 143848611 143849437 -433052 + L1PB4 LINE L1 5285 6109 -749 1710 82 3 78 chr12 143849437 143849731 -432758 + AluSx SINE Alu 1 272 -40 14993 192 21 21 chr12 143849731 143849800 -432689 + L1PB4 LINE L1 6109 6176 -682 2546 48 0 10 chr12 143849800 143850113 -432376 + AluY SINE Alu 1 310 -1 2242 104 16 0 chr12 143850115 143850423 -432066 + AluSp SINE Alu 1 313 0 14993 192 21 21 chr12 143850423 143851074 -431415 + L1PB4 LINE L1 6176 6851 -7 1487 164 335 6 chr12 143851094 143851575 -430914 + Charlie1 DNA MER1_type 1951 2589 -172 1838 154 58 15 chr12 143853311 143853636 -428853 + MER1B DNA MER1_type 1 339 0 1227 101 0 0 chr12 143853767 143853926 -428563 + AluSg/x SINE Alu 135 293 -17 248 345 52 17 chr12 143853941 143854115 -428374 - L2 LINE L2 -787 2527 2348 918 209 106 144 chr12 143854378 143854516 -427973 - MLT1A2 LTR MaLR 0 374 232 2097 103 20 17 chr12 143854516 143854818 -427671 - AluSc SINE Alu -6 303 1 918 209 106 144 chr12 143854818 143855019 -427470 - MLT1A2 LTR MaLR -142 232 70 1028 128 13 0 chr12 143855019 143855199 -427290 - AluSg/x SINE Alu 0 313 132 542 134 24 0 chr12 143855199 143855281 -427208 - MLT1A2 LTR MaLR -281 84 1 2237 103 3 3 chr12 143855321 143855621 -426868 + AluSx SINE Alu 7 306 -6 475 286 77 15 chr12 143855626 143855885 -426604 - L2 LINE L2 -235 3078 2804 496 317 18 35 chr12 143856389 143856616 -425873 - MIR SINE MIR -6 256 34 1928 130 34 17 chr12 143856798 143857091 -425398 - AluSx SINE Alu -14 298 1 840 176 114 0 chr12 143857095 143857271 -425218 + L1MB8 LINE L1 5732 5927 -251 354 272 45 73 chr12 143857274 143857520 -424969 - L1MC4a LINE L1 -1836 5972 5734 1770 168 3 3 chr12 143858618 143858910 -423579 - AluJo SINE Alu -20 292 1 260 250 241 17 chr12 143859076 143859192 -423297 + MER5A DNA MER1_type 41 182 -7 289 326 89 5 chr12 143859240 143859464 -423025 - L1MC4a LINE L1 -922 5224 4982 * 861 229 42 57 chr12 143859456 143859628 -422861 - L1MC4a LINE L1 -1604 4542 4376 2292 117 0 0 chr12 143859628 143859928 -422561 - AluSx SINE Alu -12 300 1 861 229 42 57 chr12 143859928 143860091 -422398 - L1MC4a LINE L1 -1770 4376 4212 365 247 106 55 chr12 143860172 143860224 -422265 - L1MC4a LINE L1 -2649 3497 3449 2158 108 0 10 chr12 143860224 143860521 -421968 - AluSc SINE Alu -15 294 1 365 247 106 55 chr12 143860521 143860703 -421786 - L1MC4a LINE L1 -2697 3449 3251 * 1909 142 35 0 chr12 143860692 143861009 -421480 - L1MC/D LINE L1 -661 5683 5356 2382 92 0 3 chr12 143861448 143861754 -420735 + AluY SINE Alu 1 305 -6 2182 120 0 0 chr12 143862521 143862821 -419668 - AluSx SINE Alu -12 300 1 2103 103 35 0 chr12 143863090 143863372 -419117 - AluY SINE Alu -19 292 1 896 203 13 0 chr12 143863596 143863754 -418735 + FRAM SINE Alu 1 156 -20 1259 184 93 91 chr12 143863760 143864124 -418365 - MLT1A1 LTR MaLR 0 365 1 662 321 98 41 chr12 143864726 143865237 -417252 - MLT1L LTR MaLR -72 543 4 1515 205 0 7 chr12 143865837 143866120 -416369 + AluJb SINE Alu 2 282 -30 2297 96 26 0 chr12 143866120 143866423 -416066 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 143866434 143866455 -416034 + AT_rich Low_complexity Low_complexity 1 21 0 2442 94 0 0 chr12 143866455 143866754 -415735 + AluSc SINE Alu 1 299 -10 26 50 0 0 chr12 143867374 143867414 -415075 + AT_rich Low_complexity Low_complexity 1 40 0 24102 29 6 1 chr12 143867450 143870962 -411527 - L1PA3 LINE L1 0 6155 2630 633 263 150 74 chr12 143871169 143872072 -410417 - HAL1 LINE L1 -113 2394 1351 392 297 27 0 chr12 143872075 143872186 -410303 + L2 LINE L2 3196 3309 -4 232 313 110 45 chr12 143873382 143873628 -408861 - L2 LINE L2 -362 2952 2691 26 30 0 0 chr12 143873724 143873757 -408732 + AT_rich Low_complexity Low_complexity 1 33 0 273 288 89 20 chr12 143873958 143874086 -408403 - HsTC2 DNA Tc2 -270 1628 1316 1556 167 11 22 chr12 143874086 143874355 -408134 - AluJo SINE Alu -23 289 24 1142 217 67 46 chr12 143874533 143874606 -407883 - HsTC2 DNA Tc2 -1315 583 513 1877 141 0 46 chr12 143874606 143874933 -407556 - AluSx SINE Alu 0 312 1 1142 217 67 46 chr12 143874933 143875205 -407284 - HsTC2 DNA Tc2 -1385 513 231 251 206 59 29 chr12 143875231 143875299 -407190 - L1ME3A LINE L1 -50 6120 6051 1327 85 0 0 chr12 143875496 143875660 -406829 - AluY SINE Alu -16 295 132 274 241 0 0 chr12 143875700 143875758 -406731 - MER58 DNA MER1_type -99 116 59 230 293 197 10 chr12 143875797 143875995 -406494 - L1MEc LINE L1 -4580 1816 1582 465 119 15 0 chr12 143876489 143876556 -405933 + MER30B DNA MER1_type 1 68 -122 * 651 87 43 0 chr12 143876553 143876645 -405844 - MER30B DNA MER1_type -89 101 6 445 174 183 0 chr12 143876953 143877068 -405421 - MER58B DNA MER1_type 0 341 206 1008 186 45 0 chr12 143880615 143880792 -401697 + L1PA15 LINE L1 5979 6163 -2 2298 98 0 0 chr12 143880940 143881236 -401253 + AluY SINE Alu 1 296 -15 572 178 206 28 chr12 143881252 143881432 -401057 + L1MC4 LINE L1 7816 8027 -15 926 206 17 71 chr12 143882018 143882256 -400233 + AluJo SINE Alu 1 225 -87 1222 146 57 60 chr12 143882286 143882567 -399922 + L1MA6 LINE L1 6021 6300 0 1967 106 0 78 chr12 143882815 143883137 -399352 - AluSx SINE Alu -5 307 11 479 221 0 0 chr12 143883315 143883401 -399088 + L1ME3A LINE L1 19 104 -6322 * 4342 158 82 37 chr12 143883399 143883848 -398641 + L1ME3A LINE L1 592 1019 -5407 2373 70 3 0 chr12 143883848 143884135 -398354 + AluY SINE Alu 1 288 -23 4342 158 82 37 chr12 143884135 143884563 -397926 + L1ME3A LINE L1 1019 1426 -5000 3540 182 79 27 chr12 143884563 143885115 -397374 + MER44D DNA MER2_type 1 470 -2017 1720 169 6 31 chr12 143885115 143885435 -397054 + AluJo SINE Alu 1 312 0 3540 182 79 27 chr12 143885435 143885579 -396910 + MER44D DNA MER2_type 470 605 0 4342 158 82 37 chr12 143885579 143885894 -396595 + L1ME3A LINE L1 1426 1926 -4500 727 244 17 28 chr12 143885896 143886072 -396417 - AluJo SINE Alu -18 294 121 275 85 128 0 chr12 143886072 143886119 -396370 + L1ME3A LINE L1 1949 2001 -4425 2151 111 0 14 chr12 143886119 143886416 -396073 + AluSx SINE Alu 1 293 -19 2168 95 26 13 chr12 143886421 143886726 -395763 + AluSg SINE Alu 1 309 -1 1196 97 13 0 chr12 143886726 143886880 -395609 + AluSg/x SINE Alu 134 289 -23 1347 140 83 19 chr12 143886902 143887056 -395433 + L1ME3A LINE L1 2041 2220 -4206 1980 145 0 10 chr12 143887056 143887352 -395137 + AluSx SINE Alu 1 293 -19 1347 140 83 19 chr12 143887352 143887461 -395028 + L1ME3A LINE L1 2220 2321 -4105 507 107 27 0 chr12 143887463 143887538 -394951 + AluS SINE Alu 2 78 -234 726 221 20 13 chr12 143887734 143887877 -394612 + FRAM SINE Alu 17 161 -10 2358 94 0 0 chr12 143887877 143888174 -394315 - AluY SINE Alu -14 297 1 2541 235 62 20 chr12 143888183 143889048 -393441 + L1PA15-16 LINE L1 2836 3736 -3113 3451 199 29 67 chr12 143889057 143890064 -392425 + LTR5 LTR ERVK 1 969 0 4236 145 27 7 chr12 143890064 143890762 -391727 + HERVK LTR ERVK 1 712 -6531 4062 169 6 7 chr12 143890873 143891558 -390931 + HERVK LTR ERVK 3006 3689 -3554 293 254 0 32 chr12 143891591 143891717 -390772 + (CAGAGA)n Simple_repeat Simple_repeat 4 125 0 192 77 0 0 chr12 143891722 143891748 -390741 + (GA)n Simple_repeat Simple_repeat 1 26 0 1977 97 0 11 chr12 143891752 143892031 -390458 + HERVK LTR ERVK 5186 5461 -1782 10460 162 11 12 chr12 143892230 143893990 -388499 + HERVK LTR ERVK 5533 7243 0 3539 199 26 65 chr12 143893990 143894999 -387490 + LTR5 LTR ERVK 1 969 0 2746 229 48 32 chr12 143895000 143895094 -387395 + L1ME3A LINE L1 3327 3418 -3008 1615 190 3 14 chr12 143895094 143895384 -387105 + AluJo SINE Alu 3 289 -23 2142 122 7 0 chr12 143895386 143895681 -386808 + AluSq SINE Alu 1 297 -16 2746 229 48 32 chr12 143895681 143896021 -386468 + L1ME3A LINE L1 3418 3751 -2675 2028 152 0 3 chr12 143896021 143896318 -386171 + AluJb SINE Alu 1 296 -16 2746 229 48 32 chr12 143896318 143896785 -385704 + L1ME3A LINE L1 3751 4246 -2180 3046 114 66 23 chr12 143896803 143897320 -385169 + L1MC1 LINE L1 5528 6066 -267 215 61 30 0 chr12 143897352 143897385 -385104 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 2275 107 10 0 chr12 143897385 143897685 -384804 - AluSx SINE Alu -9 303 1 355 172 8 194 chr12 143897875 143897918 -384571 + MER5A DNA MER1_type 33 82 -107 537 170 0 20 chr12 143897918 143898018 -384471 + HY3 scRNA scRNA 1 98 -3 355 172 8 194 chr12 143898018 143898108 -384381 + MER5A DNA MER1_type 82 141 -48 292 369 89 6 chr12 143898110 143898457 -384032 + L2 LINE L2 2271 2646 -668 959 267 123 28 chr12 143898563 143899472 -383017 + L1ME3A LINE L1 5082 6079 -371 1737 191 0 7 chr12 143899518 143899801 -382688 - AluJo SINE Alu -31 281 1 332 303 69 21 chr12 143899997 143900142 -382347 + L1ME3A LINE L1 6291 6442 -8 637 85 19 38 chr12 143900213 143900319 -382170 + AluSg SINE Alu 2 105 -205 1105 142 6 0 chr12 143900405 143900567 -381922 + AluSc SINE Alu 132 294 -15 2354 78 0 3 chr12 143901619 143901914 -380575 - AluY SINE Alu -16 295 2 327 284 11 0 chr12 143902864 143902952 -379537 + Charlie8 DNA MER1_type 170 258 -2159 191 269 90 30 chr12 143903531 143903598 -378891 + L2 LINE L2 3191 3261 -52 839 189 57 0 chr12 143903604 143903763 -378726 - MER5A DNA MER1_type -21 168 1 488 144 77 58 chr12 143904115 143904219 -378270 + FRAM SINE Alu 57 162 -14 246 32 0 0 chr12 143904221 143904252 -378237 + (TA)n Simple_repeat Simple_repeat 1 31 0 3424 100 84 2 chr12 143905619 143906131 -376358 - MER41A LTR ERV1 0 554 1 1547 113 13 4 chr12 143906131 143906360 -376129 - MER41A LTR ERV1 -299 255 25 2209 113 0 16 chr12 143906360 143906669 -375820 + AluSx SINE Alu 2 305 -7 2226 111 7 0 chr12 143906673 143906971 -375518 + AluSg SINE Alu 1 300 -10 258 118 0 0 chr12 143906996 143907030 -375459 - MER41B LTR ERV1 -599 36 3 2499 75 0 0 chr12 143907858 143908153 -374336 + AluSg SINE Alu 1 295 -15 311 363 70 0 chr12 143908506 143908721 -373768 + L2 LINE L2 2645 2874 -440 293 315 157 0 chr12 143909008 143909116 -373373 + L2 LINE L2 3148 3272 0 827 224 0 6 chr12 143909452 143909613 -372876 - AluSg/x SINE Alu -19 291 132 2209 110 3 3 chr12 143909613 143909912 -372577 - AluSq SINE Alu -14 299 1 412 245 0 0 chr12 143910044 143910142 -372347 - L1M4 LINE L1 -1310 4836 4739 1802 92 0 0 chr12 143910215 143910443 -372046 - AluSc SINE Alu -5 304 77 784 204 7 7 chr12 143910454 143910625 -371864 - AluJb SINE Alu 0 306 136 2233 234 92 3 chr12 143910706 143911155 -371334 + L1MDa LINE L1 1747 2281 -4259 865 150 0 0 chr12 143911155 143911288 -371201 + FLAM_C SINE Alu 1 133 0 2233 234 92 3 chr12 143911288 143911534 -370955 + L1MDa LINE L1 2281 2504 -4036 442 198 63 24 chr12 143911794 143911920 -370569 + L1PB4 LINE L1 6026 6153 -3 2199 120 0 7 chr12 143911939 143912238 -370251 + AluSx SINE Alu 1 297 -15 282 180 0 0 chr12 143912383 143912444 -370045 + (TA)n Simple_repeat Simple_repeat 1 61 0 1928 144 11 0 chr12 143912781 143913065 -369424 - AluJo SINE Alu -16 296 10 1837 158 18 4 chr12 143913207 143913485 -369004 + AluJo SINE Alu 1 282 -30 2310 81 3 17 chr12 143913498 143913793 -368696 + AluSp SINE Alu 1 291 -22 241 183 37 12 chr12 143913917 143913999 -368490 + (TA)n Simple_repeat Simple_repeat 2 85 0 1330 189 35 0 chr12 143914108 143914368 -368121 - L1ME LINE L1 -463 5703 5435 * 1518 233 23 39 chr12 143914366 143914799 -367690 + L1ME2 LINE L1 5705 6130 -34 669 201 8 15 chr12 143914800 143914934 -367555 + FLAM_A SINE Alu 1 133 0 2134 110 3 7 chr12 143914958 143915249 -367240 - AluSx SINE Alu -22 290 1 1643 166 45 0 chr12 143915308 143915597 -366892 + AluJb SINE Alu 9 310 -2 2471 57 0 20 chr12 143915707 143916005 -366484 - AluY SINE Alu -19 292 1 540 332 59 5 chr12 143916072 143916259 -366230 + HERV16 LTR ERVL 2832 3028 -1968 23 54 0 0 chr12 143916949 143916986 -365503 + AT_rich Low_complexity Low_complexity 1 37 0 1826 139 10 24 chr12 143917027 143917321 -365168 - AluJo SINE Alu -22 290 1 485 305 97 3 chr12 143917458 143917834 -364655 - HERV16 LTR ERVL -2142 2854 2430 760 264 35 67 chr12 143917886 143918170 -364319 - HERV16 LTR ERVL -2664 2332 2058 2118 90 11 0 chr12 143918318 143918586 -363903 - AluSx SINE Alu -41 271 1 21 36 0 0 chr12 143918621 143918649 -363840 + AT_rich Low_complexity Low_complexity 1 28 0 1779 160 35 0 chr12 143918722 143919009 -363480 + AluJb SINE Alu 1 297 -15 349 222 49 0 chr12 143919138 143919219 -363270 + HAL1 LINE L1 1502 1586 -921 2328 93 0 0 chr12 143919941 143920241 -362248 + AluY SINE Alu 1 300 -11 543 272 70 58 chr12 143920353 143920867 -361622 + L1MEc LINE L1 1734 2253 -4143 718 133 19 0 chr12 143920867 143920972 -361517 - FRAM SINE Alu -22 154 48 180 0 0 0 chr12 143920981 143921001 -361488 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 417 271 0 0 chr12 143921020 143921105 -361384 - AluJ/FLAM SINE Alu -226 86 2 913 193 97 14 chr12 143921105 143921395 -361094 + L1MEc LINE L1 2204 2517 -3698 * 4130 139 31 57 chr12 143921372 143922027 -360462 + L1MA4 LINE L1 5177 5820 -549 2251 122 0 0 chr12 143922027 143922331 -360158 + AluSx SINE Alu 1 304 -8 4130 139 31 57 chr12 143922331 143922594 -359895 + L1MA4 LINE L1 5820 6088 -281 261 229 0 24 chr12 143922595 143922678 -359811 + L1MB3 LINE L1 6087 6167 -16 666 124 95 0 chr12 143922718 143922855 -359634 + L1MEc LINE L1 2498 2647 -3568 1563 184 30 84 chr12 143922857 143923260 -359229 - MLT1B LTR MaLR -1 389 9 1274 141 50 32 chr12 143923573 143923793 -358696 + AluSg/x SINE Alu 86 309 -3 715 193 55 14 chr12 143923934 143924079 -358410 + AluJb SINE Alu 157 307 -5 903 178 6 0 chr12 143924482 143924645 -357844 - AluSg/x SINE Alu -10 300 137 204 157 0 39 chr12 143925081 143925132 -357357 + (CCCCG)n Simple_repeat Simple_repeat 1 49 0 1954 155 3 0 chr12 143925478 143925769 -356720 + AluSx SINE Alu 1 292 -20 236 272 68 7 chr12 143925771 143925918 -356571 + L1M4 LINE L1 4257 4412 -1734 1107 191 116 0 chr12 143925927 143926204 -356285 + L1MD2 LINE L1 6051 6359 0 428 315 53 50 chr12 143926667 143927045 -355444 + L1M4 LINE L1 3329 3707 -2439 686 277 63 50 chr12 143927154 143927472 -355017 + MLT1G1 LTR MaLR 1 322 -273 399 294 0 37 chr12 143927528 143927664 -354825 + MLT1G1 LTR MaLR 425 555 -12 472 313 76 13 chr12 143927688 143928072 -354417 + MLT1G1-int LTR MaLR 14 541 -830 543 293 45 78 chr12 143928686 143929017 -353472 + MLT1G1-int LTR MaLR 1028 1347 -24 777 217 29 80 chr12 143929032 143929202 -353287 + MLT1G1 LTR MaLR 4 111 -479 842 154 0 22 chr12 143929202 143929338 -353151 + FLAM_C SINE Alu 1 133 0 777 217 29 80 chr12 143929338 143929497 -352992 + MLT1G1 LTR MaLR 111 276 -314 267 250 0 16 chr12 143929581 143929645 -352844 + MLT1G1 LTR MaLR 426 488 -67 2186 107 7 0 chr12 143929650 143929941 -352548 - AluSg1 SINE Alu -16 293 1 229 196 39 0 chr12 143929978 143930029 -352460 + MLT1G1 LTR MaLR 543 595 0 2306 121 0 0 chr12 143930062 143930369 -352120 - AluSx SINE Alu -5 307 1 316 293 26 17 chr12 143930655 143930771 -351718 + L1M4 LINE L1 4096 4212 -1934 2018 155 155 3 chr12 143930781 143931148 -351341 + MLT2B3 LTR ERVL 1 423 -131 4849 189 36 12 chr12 143931150 143932097 -350392 + MER52A LTR ERV1 786 1755 0 2341 70 21 0 chr12 143932097 143932384 -350105 - AluSq SINE Alu -20 293 1 404 273 64 9 chr12 143932385 143932495 -349994 - MLT1A2 LTR MaLR -254 120 5 2017 147 3 10 chr12 143932530 143932842 -349647 + AluSx SINE Alu 1 310 -2 643 84 0 0 chr12 143933026 143933109 -349380 + AluY SINE Alu 2 84 -227 2213 82 0 7 chr12 143933109 143933390 -349099 + AluY SINE Alu 28 306 -5 623 159 77 65 chr12 143933404 143933574 -348915 - LTR45B LTR ERV1 0 489 318 361 141 28 0 chr12 143934483 143934556 -347933 - Alu SINE Alu -10 292 241 392 352 0 6 chr12 143934559 143934735 -347754 - LOR1-int LTR ERV1 -537 7583 7409 387 0 0 0 chr12 143934811 143934854 -347635 + (TG)n Simple_repeat Simple_repeat 2 44 0 195 69 0 0 chr12 143934855 143934884 -347605 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 276 111 42 0 chr12 143934918 143934990 -347499 + (TA)n Simple_repeat Simple_repeat 1 75 0 1964 148 0 3 chr12 143934990 143935274 -347215 - AluSg SINE Alu -27 283 1 297 231 50 66 chr12 143935347 143935468 -347021 - LOR1-int LTR ERV1 -830 7290 7172 842 139 0 16 chr12 143935483 143935612 -346877 - FLAM_C SINE Alu -6 127 1 35 24 0 0 chr12 143935949 143935991 -346498 + AT_rich Low_complexity Low_complexity 1 42 0 225 0 0 0 chr12 143937756 143937781 -344708 + (TA)n Simple_repeat Simple_repeat 2 26 0 2815 167 37 50 chr12 143937781 143938375 -344114 - L1MA9 LINE L1 -85 6227 5642 1510 204 109 28 chr12 143938375 143938771 -343718 + MSTC LTR MaLR 1 428 0 692 156 14 14 chr12 143938773 143938914 -343575 + MSTC-int LTR MaLR 2 142 -1593 2535 54 0 3 chr12 143938993 143939288 -343201 - AluSx SINE Alu -18 294 1 262 239 0 15 chr12 143939453 143939520 -342969 + MER72 LTR ERV1 410 475 -247 626 213 16 8 chr12 143939624 143939751 -342738 + LTR45 LTR ERV1 389 516 -9 754 177 6 72 chr12 143939757 143939938 -342551 - L1MA9 LINE L1 -1205 4941 4773 21 0 0 0 chr12 143940324 143940345 -342144 + AT_rich Low_complexity Low_complexity 1 21 0 2175 69 3 10 chr12 143940386 143940676 -341813 + AluY SINE Alu 1 288 -23 21 0 0 0 chr12 143941051 143941072 -341417 + GC_rich Low_complexity Low_complexity 1 21 0 264 222 0 0 chr12 143941493 143941538 -340951 - AluJ/monomer SINE Alu -255 45 1 1048 157 13 0 chr12 143941961 143942120 -340369 + FRAM SINE Alu 1 161 -15 302 262 52 77 chr12 143942170 143942418 -340071 - L1M4 LINE L1 -1537 4609 4368 21 36 0 0 chr12 143942618 143942646 -339843 + AT_rich Low_complexity Low_complexity 1 28 0 480 283 116 0 chr12 143943018 143943191 -339298 + MIR SINE MIR 66 258 -4 2011 118 38 3 chr12 143943399 143943688 -338801 - AluSq SINE Alu -14 299 1 382 320 91 43 chr12 143943735 143943826 -338663 + L1M4 LINE L1 2226 2311 -3835 1787 153 10 35 chr12 143943826 143944140 -338349 + AluJo SINE Alu 1 306 -6 382 320 91 43 chr12 143944140 143944420 -338069 + L1M4 LINE L1 2311 2615 -3531 186 300 33 78 chr12 143944421 143944511 -337978 - MIR SINE MIR -78 130 45 3015 192 74 30 chr12 143945442 143946179 -336310 + Tigger7 DNA MER2_type 1 2587 0 527 240 39 72 chr12 143946307 143946515 -335974 - L1ME3A LINE L1 0 6170 5970 1870 118 51 20 chr12 143946719 143947015 -335474 - AluSx SINE Alu -7 305 1 402 204 21 0 chr12 143947027 143947120 -335369 - L1MC5 LINE L1 -746 7215 7121 227 269 13 13 chr12 143947116 143947194 -335295 - L1MC5 LINE L1 -1138 6823 6746 * 292 206 54 103 chr12 143947189 143947293 -335196 - L1M4 LINE L1 -1753 4393 4300 1950 108 39 46 chr12 143947293 143947598 -334891 - AluSg SINE Alu -7 303 1 292 206 54 103 chr12 143947598 143947677 -334812 - L1M4 LINE L1 -1846 4300 4219 1590 184 0 41 chr12 143947687 143948002 -334487 - AluJo SINE Alu -10 302 1 281 252 80 97 chr12 143948015 143948181 -334308 - L1M4 LINE L1 -2584 3562 3400 2240 88 3 7 chr12 143948181 143948475 -334014 + AluSc SINE Alu 1 293 -16 281 252 80 97 chr12 143948475 143948534 -333955 - L1M4 LINE L1 -2746 3400 3341 * 608 240 88 10 chr12 143948532 143948736 -333753 - L1MB7 LINE L1 -9 6175 5956 2255 106 0 3 chr12 143948736 143949038 -333451 + AluSx SINE Alu 1 301 -11 914 211 0 0 chr12 143949044 143949205 -333284 + FRAM SINE Alu 4 164 -12 435 198 57 162 chr12 143949267 143949601 -332888 - L1MDa LINE L1 -4848 1692 1394 22 0 0 0 chr12 143949940 143949962 -332527 + AT_rich Low_complexity Low_complexity 1 22 0 968 210 0 0 chr12 143950245 143950412 -332077 - AluJb SINE Alu -21 291 125 351 43 106 35 chr12 143950416 143950557 -331932 + (TTATA)n Simple_repeat Simple_repeat 5 155 0 660 184 10 0 chr12 143950567 143950670 -331819 - FLAM_C SINE Alu -34 109 6 1957 145 12 30 chr12 143950786 143951118 -331371 + MER65A LTR ERV1 1 326 -119 650 82 0 0 chr12 143951117 143951202 -331287 - 5S rRNA rRNA -33 88 4 * 744 193 14 0 chr12 143951206 143951346 -331143 + MER65A LTR ERV1 304 445 0 948 250 5 0 chr12 143951927 143952139 -330350 - MIR SINE MIR -25 237 25 204 297 50 0 chr12 143952488 143952589 -329900 + (TTGG)n Simple_repeat Simple_repeat 4 109 0 2052 134 20 10 chr12 143953048 143953354 -329135 - AluSg SINE Alu -1 309 1 707 333 40 33 chr12 143953619 143954048 -328441 - LTR16C LTR ERVL 0 491 60 953 158 29 6 chr12 143954505 143954676 -327813 - AluJo SINE Alu -20 292 118 1627 206 165 30 chr12 143954979 143955470 -327019 - MER68 LTR ERV1 0 562 6 250 310 75 29 chr12 143955495 143955669 -326820 - L2 LINE L2 -16 3297 3116 1403 196 33 101 chr12 143955685 143955919 -326570 - MLT1A2 LTR MaLR -4 370 172 1386 190 68 30 chr12 143955919 143956214 -326275 - AluJb SINE Alu -6 306 1 1403 196 33 101 chr12 143956214 143956376 -326113 - MLT1A2 LTR MaLR -202 172 1 225 364 202 3 chr12 143956428 143956780 -325709 - L2 LINE L2 -338 2976 2555 1795 163 0 10 chr12 143957045 143957333 -325156 + AluJo SINE Alu 9 293 -19 474 256 77 36 chr12 143957333 143957528 -324961 + L2 LINE L2 2338 2540 -774 1112 193 41 41 chr12 143957651 143957966 -324523 + AluJo SINE Alu 1 288 -24 438 175 31 0 chr12 143958227 143958324 -324165 + L1MA7 LINE L1 6192 6291 0 21 0 0 0 chr12 143958324 143958345 -324144 + AT_rich Low_complexity Low_complexity 1 21 0 521 302 62 24 chr12 143958957 143959245 -323244 + L1M4 LINE L1 3538 3836 -2310 1000 202 10 15 chr12 143959396 143959594 -322895 + AluJo SINE Alu 1 197 -115 279 310 87 43 chr12 143959728 143959822 -322667 + L2 LINE L2 3118 3206 -107 2495 81 0 0 chr12 143959822 143960131 -322358 - AluY SINE Alu -2 309 1 279 310 87 43 chr12 143960131 143960220 -322269 + L2 LINE L2 3206 3309 -4 225 0 0 0 chr12 143960465 143960490 -321999 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr12 143963335 143963365 -319124 + AT_rich Low_complexity Low_complexity 1 30 0 1279 107 162 0 chr12 143963968 143964202 -318287 - Tigger5 DNA MER2_type 0 2323 2052 271 268 0 0 chr12 143964200 143964256 -318233 - Tigger5 DNA MER2_type -2267 56 1 * 1622 117 90 77 chr12 143964763 143965062 -317427 + AluSx SINE Alu 1 303 -9 579 250 117 102 chr12 143966935 143967355 -315134 - LTR16A LTR ERVL 0 450 25 2601 71 0 0 chr12 143968144 143968455 -314034 - AluY SINE Alu 0 311 1 625 270 144 7 chr12 143968498 143968829 -313660 - HERV16 LTR ERVL -2403 2593 2249 673 301 113 39 chr12 143968881 143969015 -313474 - HERV16 LTR ERVL -4582 414 291 2428 115 46 3 chr12 143969015 143969364 -313125 - THE1B LTR MaLR 0 364 1 673 301 113 39 chr12 143969364 143969611 -312878 - HERV16 LTR ERVL -4705 291 5 698 301 107 24 chr12 143969623 143969959 -312530 - LTR16A LTR ERVL -8 442 79 800 33 0 0 chr12 143969978 143970068 -312421 - AluY SINE Alu -218 93 4 231 303 57 41 chr12 143970258 143970380 -312109 - LTR16B LTR ERVL -264 200 77 955 324 55 13 chr12 143970728 143971182 -311307 + HERV16 LTR ERVL 1748 2220 -2776 558 251 49 58 chr12 143971359 143971582 -310907 + HERV16 LTR ERVL 2112 2332 -2664 898 295 136 5 chr12 143971634 143972010 -310479 + HERV16 LTR ERVL 2430 2854 -2142 1844 146 7 20 chr12 143972147 143972441 -310048 + AluJo SINE Alu 1 290 -22 23 54 0 0 chr12 143972482 143972519 -309970 + AT_rich Low_complexity Low_complexity 1 37 0 543 332 59 5 chr12 143973209 143973396 -309093 - HERV16 LTR ERVL -1968 3028 2832 2465 54 0 20 chr12 143973463 143973761 -308728 + AluY SINE Alu 1 292 -19 1626 166 45 0 chr12 143973871 143974160 -308329 - AluJb SINE Alu -2 310 9 2223 87 0 30 chr12 143974219 143974518 -307971 + AluSq SINE Alu 1 290 -23 285 181 24 12 chr12 143974642 143974725 -307764 + (TA)n Simple_repeat Simple_repeat 2 85 0 1352 192 31 0 chr12 143974834 143975095 -307394 - L1ME LINE L1 -463 5703 5435 * 1536 233 23 39 chr12 143975093 143975526 -306963 + L1ME2 LINE L1 5705 6130 -34 724 201 8 15 chr12 143975527 143975661 -306828 + FLAM_A SINE Alu 1 133 0 366 98 20 0 chr12 143975685 143975736 -306753 - Alu SINE Alu -13 289 238 21 0 0 0 chr12 143975842 143975863 -306626 + GC_rich Low_complexity Low_complexity 1 21 0 830 217 72 42 chr12 143976259 143976522 -305967 - AluSg SINE Alu -38 272 2 2392 93 3 3 chr12 143976752 143977064 -305425 + AluSx SINE Alu 1 312 0 965 183 78 0 chr12 143977188 143977379 -305110 - AluJb SINE Alu -21 291 86 476 223 62 0 chr12 143977623 143977735 -304754 - MER58 DNA MER1_type -77 264 146 2146 114 47 0 chr12 143978720 143979019 -303470 + AluSq SINE Alu 1 313 0 963 77 0 0 chr12 143981729 143981846 -300643 + AluSq SINE Alu 133 249 -64 412 321 266 15 chr12 143981846 143981995 -300494 - L2 LINE L2 -368 2946 2836 2084 136 3 0 chr12 143981995 143982290 -300199 - AluJb SINE Alu -16 296 1 412 321 266 15 chr12 143982290 143982437 -300052 - L2 LINE L2 -478 2836 2727 2136 142 91 42 chr12 143982437 143982799 -299690 + MSTA LTR MaLR 1 387 -41 2617 59 0 0 chr12 143982799 143983106 -299383 - AluY SINE Alu -4 307 1 2136 142 91 42 chr12 143983106 143983151 -299338 + MSTA LTR MaLR 387 428 0 412 321 266 15 chr12 143983151 143983326 -299163 - L2 LINE L2 -587 2727 2355 2038 128 30 0 chr12 143984718 143985016 -297473 + AluSg SINE Alu 2 308 -2 185 287 109 30 chr12 143985028 143985129 -297360 - L2 LINE L2 -32 3281 3173 261 188 168 89 chr12 143985368 143985469 -297020 - MLT1J LTR MaLR -160 351 243 1205 214 122 52 chr12 143985681 143986050 -296439 - MSTD LTR MaLR 0 396 2 2235 112 0 0 chr12 143986099 143986402 -296087 + AluSg SINE Alu 1 303 -7 307 336 28 51 chr12 143986458 143986672 -295817 + HAL1 LINE L1 1256 1464 -1043 291 294 17 8 chr12 143986698 143986817 -295672 + HAL1 LINE L1 1553 1672 -835 1617 193 7 0 chr12 143986824 143987109 -295380 + AluJo SINE Alu 9 295 -17 2492 53 7 0 chr12 143988047 143988347 -294142 + AluY SINE Alu 1 302 -9 258 313 30 54 chr12 143988637 143988676 -293813 - L2 LINE L2 -160 3153 3115 2202 129 3 0 chr12 143988676 143988987 -293502 + AluSx SINE Alu 1 312 0 258 313 30 54 chr12 143988987 143989113 -293376 - L2 LINE L2 -198 3115 2992 * 588 309 113 25 chr12 143989103 143989465 -293024 - L2 LINE L2 -557 2757 2364 300 207 122 12 chr12 143990549 143990631 -291858 + HAL1 LINE L1 2332 2422 -85 1943 126 7 14 chr12 143990741 143990876 -291613 + AluSx SINE Alu 1 135 -179 2620 59 0 0 chr12 143990876 143991181 -291308 + AluY SINE Alu 1 305 -6 1943 126 7 14 chr12 143991181 143991361 -291128 + AluSx SINE Alu 135 314 0 1814 127 90 0 chr12 143991630 143991898 -290591 + AluSq SINE Alu 1 292 -21 1973 109 3 14 chr12 143992045 143992328 -290161 + AluY SINE Alu 1 305 0 193 40 0 0 chr12 143992328 143992353 -290136 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 405 143 0 0 chr12 143992385 143992441 -290048 + LTR47A LTR ERVL 277 332 -120 4125 149 58 58 chr12 143992443 143993135 -289354 + LTR49-int LTR ERV1 4835 5572 -1026 2274 98 0 0 chr12 143993135 143993442 -289047 + AluSg SINE Alu 1 307 -3 4125 149 58 58 chr12 143993442 143994018 -288471 + LTR49-int LTR ERV1 5572 6146 -452 483 127 0 0 chr12 143994069 143994140 -288349 + LTR47A LTR ERVL 1 71 -381 341 146 0 0 chr12 143994140 143994195 -288294 + LTR47A LTR ERVL 17 71 -381 377 127 0 0 chr12 143994195 143994250 -288239 + LTR47A LTR ERVL 17 71 -381 355 127 0 0 chr12 143994250 143994305 -288184 + LTR47A LTR ERVL 17 71 -381 364 146 0 0 chr12 143994305 143994360 -288129 + LTR47A LTR ERVL 17 71 -381 1903 138 91 0 chr12 143994360 143994678 -287811 + LTR47A LTR ERVL 17 363 -89 261 0 0 0 chr12 143994678 143994707 -287782 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 595 294 96 33 chr12 143994707 143995071 -287418 + L1M4 LINE L1 4259 4645 -1501 2165 100 0 0 chr12 143995648 143995938 -286551 + AluSx SINE Alu 1 290 -22 450 295 78 60 chr12 143995980 143996248 -286241 + L1ME3 LINE L1 790 1062 -5334 713 266 30 66 chr12 143996442 143996581 -285908 + L1ME3 LINE L1 5575 5717 -514 1174 164 27 27 chr12 143996581 143996800 -285689 + MER20 DNA MER1_type 1 219 0 713 266 30 66 chr12 143996800 143996994 -285495 + L1ME3 LINE L1 5717 5896 -335 2917 175 111 39 chr12 143997168 143997850 -284639 + L1MCa LINE L1 30 662 -5764 2063 96 45 0 chr12 143997850 143998142 -284347 + AluSx SINE Alu 7 311 -1 2917 175 111 39 chr12 143998142 143998275 -284214 + L1MCa LINE L1 662 784 -5642 2052 139 0 0 chr12 143998275 143998576 -283913 + AluSx SINE Alu 1 301 -11 2917 175 111 39 chr12 143998576 143998817 -283672 + L1MCa LINE L1 784 1300 -5126 391 231 13 0 chr12 143998819 143998896 -283593 + Tigger5 DNA MER2_type 1 78 -2245 455 215 0 0 chr12 143998896 143998975 -283514 - Tigger5 DNA MER2_type -3 2320 2242 430 173 12 12 chr12 143998965 143999046 -283443 + Tigger5 DNA MER2_type 2242 2322 -1 * 1132 159 210 24 chr12 143999046 143999440 -283049 + L1MCa LINE L1 1300 1879 -4547 2000 133 0 0 chr12 143999440 143999734 -282755 - AluSx SINE Alu -18 294 1 1132 159 210 24 chr12 143999734 143999796 -282693 + L1MCa LINE L1 1879 1928 -4498 1084 139 146 101 chr12 143999796 144000084 -282405 - AluJo SINE Alu 0 302 2 1943 105 21 7 chr12 144000086 144000371 -282118 - AluSg SINE Alu -8 302 14 2142 98 3 0 chr12 144000478 144000773 -281716 + AluSg SINE Alu 12 307 -3 1021 97 14 0 chr12 144000914 144001058 -281431 + AluSg/x SINE Alu 157 302 -10 4163 216 60 72 chr12 144001058 144001616 -280873 + L1M4 LINE L1 3335 3898 -2248 1806 123 25 21 chr12 144001616 144001900 -280589 - AluJb SINE Alu -16 296 12 4163 216 60 72 chr12 144001900 144002177 -280312 + L1M4 LINE L1 3898 4177 -1969 1689 146 124 3 chr12 144002177 144002499 -279990 + MER46B DNA MER2_type 1 236 0 4163 216 60 72 chr12 144002499 144002582 -279907 + L1M4 LINE L1 4177 4260 -1886 2128 101 7 7 chr12 144002582 144002889 -279600 + AluSc SINE Alu 1 307 -2 4163 216 60 72 chr12 144002889 144003371 -279118 + L1M4 LINE L1 4260 4746 -1400 1589 166 3 36 chr12 144003371 144003678 -278811 + AluJo SINE Alu 1 297 -15 4163 216 60 72 chr12 144003678 144003690 -278799 + L1M4 LINE L1 4746 4757 -1389 1520 97 0 0 chr12 144003690 144003906 -278583 + AluSg/x SINE Alu 82 297 -15 4163 216 60 72 chr12 144003906 144004042 -278447 + L1M4 LINE L1 4757 4868 -1278 357 365 46 27 chr12 144005835 144006054 -276435 + L1MCa LINE L1 2593 2815 -3611 1939 124 115 18 chr12 144006055 144006393 -276096 + LTR8A LTR ERV1 1 371 -356 1936 141 0 7 chr12 144006410 144006715 -275774 + AluJb SINE Alu 1 303 -9 6318 88 30 30 chr12 144006715 144007692 -274797 + L1MA3 LINE L1 5325 6300 -5 1099 161 0 0 chr12 144007692 144007866 -274623 + AluJb SINE Alu 120 293 -19 936 206 19 82 chr12 144007871 144008138 -274351 + L1MCa LINE L1 3771 4020 -2406 412 196 49 10 chr12 144008168 144008270 -274219 + L1MA10 LINE L1 6229 6334 0 * 1549 230 70 3 chr12 144008267 144008641 -273848 + L1MCa LINE L1 4022 4420 -2006 235 162 0 0 chr12 144008844 144008881 -273608 + L1MCa LINE L1 4386 4422 -2004 1324 181 40 31 chr12 144008912 144009238 -273251 + L1MCa LINE L1 4386 4714 -1712 2355 70 0 0 chr12 144009251 144009552 -272937 + AluSc SINE Alu 1 301 -8 1350 226 152 22 chr12 144009566 144009968 -272521 + MER76 LTR ERV 41 494 -194 2501 161 31 2 chr12 144009968 144010383 -272106 + MER41C LTR ERV1 1 427 -127 419 143 0 0 chr12 144010383 144010453 -272036 - Alu SINE Alu -5 306 237 1701 100 96 0 chr12 144011187 144011436 -271053 - AluSx SINE Alu -39 273 1 2274 91 0 7 chr12 144013178 144013486 -269003 - AluSq SINE Alu -7 306 1 1819 153 0 7 chr12 144013489 144013784 -268705 - AluJb SINE Alu -19 293 1 416 156 94 0 chr12 144013786 144013882 -268607 + MER67C LTR ERV1 604 708 -2 686 67 0 0 chr12 144013944 144014033 -268456 - AluSp/q SINE Alu -16 297 209 3399 111 39 28 chr12 144015187 144015729 -266760 + LTR14 LTR ERVK 1 548 0 453 261 0 0 chr12 144016526 144016706 -265783 + (CA)n Simple_repeat Simple_repeat 1 180 0 324 222 0 20 chr12 144016723 144016876 -265613 + (CA)n Simple_repeat Simple_repeat 1 150 0 291 255 10 20 chr12 144016887 144016985 -265504 + (CA)n Simple_repeat Simple_repeat 1 97 0 277 244 7 7 chr12 144016998 144017133 -265356 + (CA)n Simple_repeat Simple_repeat 1 135 0 233 263 6 17 chr12 144017189 144017368 -265121 + (CA)n Simple_repeat Simple_repeat 1 177 0 478 210 0 32 chr12 144017384 144017570 -264919 + (CA)n Simple_repeat Simple_repeat 1 180 0 369 244 6 12 chr12 144017603 144017771 -264718 + (CA)n Simple_repeat Simple_repeat 1 167 0 200 231 17 17 chr12 144017824 144017941 -264548 + (CA)n Simple_repeat Simple_repeat 2 118 0 574 160 0 43 chr12 144017965 144018153 -264336 + (CA)n Simple_repeat Simple_repeat 1 180 0 327 308 161 42 chr12 144018182 144018333 -264156 - L2 LINE L2 -19 3294 3162 2067 90 37 13 chr12 144018333 144018633 -263856 + AluSq SINE Alu 1 307 -6 327 308 161 42 chr12 144018633 144018909 -263580 - L2 LINE L2 -151 3162 2816 2116 102 0 0 chr12 144019598 144019883 -262606 - AluSc SINE Alu -24 285 1 2140 82 0 4 chr12 144020503 144020784 -261705 - AluSg SINE Alu -30 280 1 965 118 7 0 chr12 144020784 144020928 -261561 - AluSq/x SINE Alu -168 145 1 572 235 36 80 chr12 144020944 144021130 -261359 + MER67C-int LTR ERV1 307 481 -4642 2081 109 3 3 chr12 144021130 144021432 -261057 - AluSx SINE Alu -10 302 1 572 235 36 80 chr12 144021432 144021496 -260993 + MER67C-int LTR ERV1 481 546 -4577 1974 124 10 0 chr12 144021981 144022272 -260217 + AluSq SINE Alu 1 294 -19 2319 143 53 23 chr12 144022719 144023089 -259400 + MER83 LTR ERV1 1 387 -61 2240 77 3 3 chr12 144023089 144023387 -259102 - AluSc SINE Alu -11 298 1 2319 143 53 23 chr12 144023387 144023451 -259038 + MER83 LTR ERV1 387 448 0 21 0 0 0 chr12 144023473 144023494 -258995 + AT_rich Low_complexity Low_complexity 1 21 0 1496 200 36 18 chr12 144023512 144023842 -258647 + LTR24B LTR ERV1 221 556 -20 2061 91 3 29 chr12 144023842 144024150 -258339 - AluSq SINE Alu -3 310 11 1904 96 44 0 chr12 144024173 144024489 -258000 - AluY SINE Alu 0 328 1 2254 63 0 3 chr12 144024526 144024811 -257678 - AluY SINE Alu -27 284 1 746 103 120 8 chr12 144024815 144024932 -257557 - AluSg SINE Alu -179 131 2 367 261 27 18 chr12 144024969 144025080 -257409 + MLT1K LTR MaLR 447 558 -30 1566 182 16 19 chr12 144025102 144025276 -257213 - AluJb SINE Alu 0 312 138 2148 105 0 3 chr12 144025276 144025572 -256917 - AluSx SINE Alu -17 295 1 1566 182 16 19 chr12 144025572 144025710 -256779 - AluJb SINE Alu -174 138 1 6736 100 9 20 chr12 144025849 144026813 -255676 + LTR13 LTR ERVK 1 954 0 2323 51 0 3 chr12 144026849 144027142 -255347 - AluY SINE Alu -7 304 13 21 0 0 0 chr12 144027145 144027166 -255323 + AT_rich Low_complexity Low_complexity 1 21 0 1054 157 186 21 chr12 144027186 144027428 -255061 - AluJb SINE Alu -20 292 11 1968 93 29 51 chr12 144027458 144027770 -254719 - AluSx SINE Alu -7 305 1 7964 193 46 21 chr12 144028424 144030053 -252436 + MER52A LTR ERV1 4 1672 -83 904 178 0 0 chr12 144030202 144030359 -252130 + MER52A LTR ERV1 1599 1755 0 184 352 56 19 chr12 144030383 144030491 -251998 + MIR SINE MIR 20 131 -131 1887 189 81 13 chr12 144030501 144030739 -251750 - MSTB LTR MaLR -1 425 148 2403 72 7 0 chr12 144030739 144031046 -251443 + AluY SINE Alu 1 309 -2 1887 189 81 13 chr12 144031046 144031204 -251285 - MSTB LTR MaLR -278 148 2 2210 95 0 0 chr12 144031281 144031576 -250913 + AluSq SINE Alu 1 295 -18 2298 89 0 35 chr12 144031632 144031827 -250662 + MLT2A2 LTR ERVL 1 182 -271 2304 77 0 7 chr12 144031827 144032126 -250363 + AluSg1 SINE Alu 1 297 -12 2298 89 0 35 chr12 144032126 144032245 -250244 + MLT2A2 LTR ERVL 182 304 -149 491 228 40 3 chr12 144032245 144032444 -250045 - LTR18A LTR ERVL 0 357 96 1909 125 13 19 chr12 144032451 144032763 -249726 + AluSx SINE Alu 1 310 -2 1213 173 37 136 chr12 144032828 144032972 -249517 + MLT1A1 LTR MaLR 1 158 -207 2157 82 0 0 chr12 144032972 144033292 -249197 + AluSg1 SINE Alu 1 320 0 1213 173 37 136 chr12 144033292 144033551 -248938 + MLT1A1 LTR MaLR 158 365 0 2424 58 0 13 chr12 144033570 144033882 -248607 - AluY SINE Alu -3 308 1 327 175 0 87 chr12 144033897 144034000 -248489 - LTR37A LTR ERV1 -325 101 8 579 212 0 17 chr12 144034292 144034410 -248079 + FLAM_C SINE Alu 2 117 -16 316 308 8 30 chr12 144034615 144034748 -247741 + CT-rich Low_complexity Low_complexity 3 132 0 279 234 102 42 chr12 144034950 144035117 -247372 + L2 LINE L2 1930 2106 -1208 1586 175 3 10 chr12 144035704 144035995 -246494 + AluJo SINE Alu 1 289 -23 2580 239 68 43 chr12 144036341 144036470 -246019 + L1M1 LINE L1 2578 2702 -4863 1205 173 26 96 chr12 144036470 144036783 -245706 + AluJb SINE Alu 1 291 -21 2580 239 68 43 chr12 144036783 144037200 -245289 + L1M1 LINE L1 2702 3107 -4458 2095 95 0 17 chr12 144037200 144037494 -244995 - AluSq SINE Alu -24 289 1 2580 239 68 43 chr12 144037494 144038056 -244433 + L1M1 LINE L1 3107 3734 -3831 2357 173 57 19 chr12 144038047 144038630 -243859 + L1M1 LINE L1 4257 4861 -2704 * 876 137 51 63 chr12 144038630 144038642 -243847 + AluJo SINE Alu 124 135 -177 864 137 15 0 chr12 144038642 144038773 -243716 + FLAM_C SINE Alu 1 133 0 876 137 51 63 chr12 144038773 144038787 -243702 + AluJo SINE Alu 135 148 -164 7733 70 19 5 chr12 144038787 144039780 -242709 + LTR13 LTR ERVK 1 1007 0 876 137 51 63 chr12 144039780 144039927 -242562 + AluJo SINE Alu 148 296 -16 * 2718 174 42 21 chr12 144039915 144040307 -242182 + L1M4c LINE L1 1787 2169 -4213 2380 112 0 3 chr12 144040307 144040621 -241868 + AluSq SINE Alu 1 313 0 2718 174 42 21 chr12 144040621 144040703 -241786 + L1M4c LINE L1 2169 2248 -4134 2350 88 0 7 chr12 144040703 144040997 -241492 + AluSx SINE Alu 1 292 -20 2718 174 42 21 chr12 144040997 144041399 -241090 + L1M4c LINE L1 2248 2796 -3586 246 330 85 21 chr12 144041410 144041519 -240970 - L1M4 LINE L1 -2409 3737 3636 2391 101 0 0 chr12 144041519 144041827 -240662 - AluSc SINE Alu -1 308 1 246 330 85 21 chr12 144041827 144042295 -240194 - L1M4 LINE L1 -2510 3636 3123 1365 246 42 14 chr12 144042322 144042756 -239733 - L1MB7 LINE L1 -13 6171 5726 430 120 0 13 chr12 144042752 144042827 -239662 - L1M4 LINE L1 -402 5776 5703 * 2542 39 0 0 chr12 144042827 144043111 -239378 + AluY SINE Alu 1 284 -27 2032 96 44 0 chr12 144043148 144043464 -239025 + AluY SINE Alu 1 328 0 1418 197 35 29 chr12 144043464 144043476 -239013 - LTR24B LTR ERV1 -14 562 552 2211 102 3 31 chr12 144043476 144043798 -238691 + AluSq SINE Alu 1 313 0 1418 197 35 29 chr12 144043798 144044125 -238364 - LTR24B LTR ERV1 -24 552 221 21 0 0 0 chr12 144044143 144044164 -238325 + AT_rich Low_complexity Low_complexity 1 21 0 255 203 31 0 chr12 144044186 144044250 -238239 - MER83 LTR ERV1 0 448 383 2344 78 3 3 chr12 144044250 144044544 -237945 + AluSc SINE Alu 1 294 -15 323 222 49 0 chr12 144044673 144044754 -237735 + HAL1 LINE L1 1502 1586 -921 388 271 58 76 chr12 144045348 144045475 -237014 + L1MEc LINE L1 1739 1862 -4534 2348 93 0 0 chr12 144045475 144045775 -236714 + AluY SINE Alu 1 300 -11 388 271 58 76 chr12 144045775 144045872 -236617 + L1MEc LINE L1 1862 1959 -4437 390 276 70 58 chr12 144045887 144046401 -236088 + L1MEc LINE L1 1734 2253 -4143 734 133 19 0 chr12 144046401 144046506 -235983 - FRAM SINE Alu -22 154 48 180 0 0 0 chr12 144046515 144046535 -235954 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1544 195 57 61 chr12 144046674 144046697 -235792 + L1MC4 LINE L1 5454 5476 -2566 291 28 0 0 chr12 144046697 144046733 -235756 + (CA)n Simple_repeat Simple_repeat 2 37 0 1544 195 57 61 chr12 144046733 144047168 -235321 + L1MC4 LINE L1 5476 5913 -2129 2293 78 0 0 chr12 144047168 144047476 -235013 - AluY SINE Alu 0 308 1 1544 195 57 61 chr12 144047476 144047487 -235002 + L1MC4 LINE L1 5913 5923 -2119 2177 96 0 0 chr12 144047487 144047767 -234722 - AluSx SINE Alu -2 310 31 4397 124 17 124 chr12 144047767 144049312 -233177 + pTR5 LTR ERV1 743 2606 0 232 147 0 0 chr12 144049312 144049346 -233143 - AluSx SINE Alu -265 34 1 540 280 70 5 chr12 144049349 144049535 -232954 + L1ME1 LINE L1 5908 6105 -61 650 241 0 0 chr12 144049535 144049676 -232813 + MER76 LTR ERV 1 141 -547 1335 169 58 15 chr12 144049947 144050207 -232282 - L1PA16 LINE L1 -9 6157 5887 2102 231 102 36 chr12 144051244 144051993 -230496 + HERVL68 LTR ERVL 2036 2833 -204 1106 103 0 7 chr12 144052277 144052422 -230067 + AluY SINE Alu 1 144 -167 1914 113 11 7 chr12 144052422 144052738 -229751 + AluY SINE Alu 1 317 0 4378 211 39 30 chr12 144052739 144053975 -228514 - L1ME LINE L1 -463 5703 4440 2500 78 0 0 chr12 144053975 144054284 -228205 - AluSc SINE Alu 0 309 1 4378 211 39 30 chr12 144054284 144054623 -227866 - L1ME LINE L1 -1726 4440 4106 1427 233 72 3 chr12 144054892 144055265 -227224 - L1ME LINE L1 -2006 4140 3742 393 196 49 10 chr12 144055262 144055364 -227125 - L1MA10 LINE L1 0 6334 6229 * 886 217 19 82 chr12 144055394 144055661 -226828 - L1ME LINE L1 -2406 3740 3491 1188 161 0 0 chr12 144055666 144055840 -226649 - AluJb SINE Alu -19 293 120 6005 88 30 30 chr12 144055840 144056817 -225672 - L1MA3 LINE L1 -5 6300 5324 2089 141 0 7 chr12 144056817 144057122 -225367 - AluJb SINE Alu -9 303 1 1837 127 115 18 chr12 144057139 144057477 -225012 - LTR8A LTR ERV1 -356 371 1 366 365 46 27 chr12 144057478 144057697 -224792 - L1ME LINE L1 -3611 2535 2313 1867 139 17 3 chr12 144058757 144059044 -223445 - AluSc SINE Alu -18 291 1 2692 33 0 3 chr12 144059299 144059604 -222885 + AluY SINE Alu 1 304 -7 489 245 7 26 chr12 144059627 144059778 -222711 + LTR7 LTR ERV1 303 450 0 920 188 5 55 chr12 144059812 144060014 -222475 + AluJo SINE Alu 121 312 0 234 173 27 53 chr12 144060483 144060558 -221931 + G-rich Low_complexity Low_complexity 5 77 0 1660 228 98 60 chr12 144060881 144061494 -220995 + MER92B LTR ERV1 1 636 0 242 213 0 13 chr12 144062055 144062130 -220359 + C-rich Low_complexity Low_complexity 1 74 0 180 179 0 0 chr12 144062156 144062195 -220294 + C-rich Low_complexity Low_complexity 1 39 0 2278 108 0 0 chr12 144062810 144063106 -219383 + AluSc SINE Alu 1 296 -13 365 311 162 40 chr12 144063784 144064059 -218430 + L2 LINE L2 2816 3163 -150 2168 90 40 13 chr12 144064059 144064358 -218131 - AluSq SINE Alu -6 307 1 365 311 162 40 chr12 144064358 144064509 -217980 + L2 LINE L2 3163 3294 -19 574 160 0 43 chr12 144064538 144064726 -217763 + (TG)n Simple_repeat Simple_repeat 1 180 0 200 231 17 17 chr12 144064750 144064867 -217622 + (TG)n Simple_repeat Simple_repeat 2 118 0 369 244 6 12 chr12 144064920 144065088 -217401 + (TG)n Simple_repeat Simple_repeat 1 167 0 478 210 0 32 chr12 144065121 144065307 -217182 + (TG)n Simple_repeat Simple_repeat 1 180 0 233 263 6 17 chr12 144065323 144065502 -216987 + (TG)n Simple_repeat Simple_repeat 1 177 0 277 244 7 7 chr12 144065558 144065693 -216796 + (TG)n Simple_repeat Simple_repeat 1 135 0 291 255 10 20 chr12 144065706 144065804 -216685 + (TG)n Simple_repeat Simple_repeat 1 97 0 324 222 0 20 chr12 144065815 144065968 -216521 + (TG)n Simple_repeat Simple_repeat 1 150 0 453 261 0 0 chr12 144065985 144066165 -216324 + (TG)n Simple_repeat Simple_repeat 1 180 0 3672 108 14 27 chr12 144066962 144067517 -214972 - LTR14 LTR ERVK 0 548 1 692 67 0 0 chr12 144068671 144068760 -213729 + AluSp/q SINE Alu 209 297 -16 393 156 94 0 chr12 144068822 144068918 -213571 - MER67C LTR ERV1 -2 708 604 1964 153 0 7 chr12 144068920 144069215 -213274 + AluJb SINE Alu 1 293 -19 2436 91 0 7 chr12 144069218 144069527 -212962 + AluSq SINE Alu 1 307 -6 1821 100 96 0 chr12 144071269 144071518 -210971 + AluSx SINE Alu 1 273 -39 424 143 0 0 chr12 144072252 144072322 -210167 + Alu SINE Alu 237 306 -5 2377 164 31 2 chr12 144072322 144072737 -209752 - MER41C LTR ERV1 -127 427 1 1358 221 136 40 chr12 144072737 144073151 -209338 - MER76 LTR ERV -194 494 32 2402 83 13 3 chr12 144073151 144073452 -209037 - AluY SINE Alu -7 304 1 1358 221 136 40 chr12 144073452 144073486 -209003 - MER76 LTR ERV -656 32 3 2115 230 102 36 chr12 144073736 144074485 -208004 - HERVL68 LTR ERVL -204 2833 2036 1335 169 58 15 chr12 144075522 144075782 -206707 + L1PA16 LINE L1 5887 6157 -9 650 241 0 0 chr12 144076053 144076194 -206295 - MER76 LTR ERV -547 141 1 528 285 70 5 chr12 144076194 144076380 -206109 - L1ME1 LINE L1 -61 6105 5908 232 147 0 0 chr12 144076383 144076417 -206072 + AluSx SINE Alu 1 34 -265 4433 121 17 124 chr12 144076417 144077962 -204527 - pTR5 LTR ERV1 0 2606 1524 2177 96 0 0 chr12 144077962 144078242 -204247 + AluSx SINE Alu 31 310 -2 2098 207 71 47 chr12 144078242 144078253 -204236 - L1MC4 LINE L1 -745 5384 5375 2306 75 0 0 chr12 144078253 144078561 -203928 + AluY SINE Alu 1 308 0 2098 207 71 47 chr12 144078561 144078996 -203493 - L1MC4 LINE L1 -754 5375 4952 291 28 0 0 chr12 144078996 144079032 -203457 + (TG)n Simple_repeat Simple_repeat 2 37 0 2098 207 71 47 chr12 144079032 144079147 -203342 - L1MC4 LINE L1 -1177 4952 4841 2464 97 0 0 chr12 144079147 144079456 -203033 - AluSq SINE Alu -4 309 1 2098 207 71 47 chr12 144079456 144080074 -202415 - L1MC4 LINE L1 -1288 4841 4696 435 255 44 54 chr12 144080139 144080437 -202052 - L1MC4 LINE L1 -5046 1073 779 1432 63 0 37 chr12 144080449 144080621 -201868 - AluY SINE Alu -7 304 138 2493 67 0 3 chr12 144080621 144080920 -201569 - AluY SINE Alu -11 300 3 1432 63 0 37 chr12 144080920 144080936 -201553 - AluY SINE Alu -173 138 123 422 330 133 44 chr12 144081011 144081447 -201042 - L1MC4 LINE L1 -5488 631 157 2237 121 3 0 chr12 144081810 144082107 -200382 - AluSx SINE Alu -12 300 3 1996 114 31 7 chr12 144082214 144082405 -200084 - AluSx SINE Alu 0 312 119 237 65 0 0 chr12 144082405 144082436 -200053 + (TG)n Simple_repeat Simple_repeat 2 32 0 1996 114 31 7 chr12 144082436 144082558 -199931 - AluSx SINE Alu -193 119 1 21 0 0 0 chr12 144082803 144082824 -199665 + AT_rich Low_complexity Low_complexity 1 21 0 1173 226 171 38 chr12 144082827 144083305 -199184 - MLT1F LTR MaLR 0 542 1 1082 197 52 100 chr12 144084279 144084588 -197901 + AluJo SINE Alu 1 294 -8 1562 153 44 33 chr12 144085346 144085620 -196869 - AluJb SINE Alu -23 289 13 424 248 210 19 chr12 144086008 144086165 -196324 - L2 LINE L2 -22 3291 3105 1519 204 11 11 chr12 144086204 144086488 -196001 + AluJo SINE Alu 6 289 -23 2278 82 0 0 chr12 144086567 144086868 -195621 - AluSc SINE Alu 0 301 1 202 326 124 0 chr12 144086976 144087105 -195384 + L2 LINE L2 2329 2473 -841 1520 157 84 0 chr12 144087133 144087407 -195082 - AluJb SINE Alu -15 297 1 1305 191 17 35 chr12 144087484 144087806 -194683 - AluJb SINE Alu 0 317 1 2333 100 0 0 chr12 144088578 144088869 -193620 + AluSc SINE Alu 1 291 -18 2371 110 0 0 chr12 144088869 144089178 -193311 + AluSc SINE Alu 1 309 0 2137 250 87 33 chr12 144091716 144093396 -189093 + L1MD2 LINE L1 34 1940 -4456 384 254 168 32 chr12 144093754 144093939 -188550 + LTR33 LTR ERVL 292 501 -20 1637 153 16 52 chr12 144095264 144095406 -187083 + AluJo SINE Alu 3 149 -163 2132 123 0 0 chr12 144095406 144095698 -186791 + AluSq SINE Alu 1 292 -21 1637 153 16 52 chr12 144095698 144095863 -186626 + AluJo SINE Alu 149 299 -13 2501 68 0 0 chr12 144096094 144096390 -186099 + AluY SINE Alu 1 296 -15 2139 116 7 0 chr12 144096396 144096690 -185799 + AluSg SINE Alu 2 297 -13 2604 55 0 13 chr12 144096844 144097153 -185336 + AluY SINE Alu 1 305 -6 656 171 0 47 chr12 144097163 144097292 -185197 + FLAM_C SINE Alu 2 124 -19 1895 132 7 33 chr12 144097647 144097951 -184538 + AluSx SINE Alu 1 296 -16 783 166 145 128 chr12 144098629 144098745 -183744 + AluJo SINE Alu 2 115 -187 2334 107 0 3 chr12 144098745 144099045 -183444 - AluSx SINE Alu -13 299 1 783 166 145 128 chr12 144099045 144099077 -183412 + AluJo SINE Alu 115 145 -157 2129 126 7 0 chr12 144099077 144099371 -183118 + AluSg SINE Alu 1 296 -14 783 166 145 128 chr12 144099371 144099517 -182972 + AluJo SINE Alu 145 302 0 2198 83 0 17 chr12 144099543 144099833 -182656 + AluY SINE Alu 1 285 -26 243 0 0 0 chr12 144099833 144099860 -182629 + (CA)n Simple_repeat Simple_repeat 2 28 0 1665 234 47 60 chr12 144099875 144100687 -181802 + L1MD2 LINE L1 3080 3931 -2284 2313 110 0 3 chr12 144100704 144101003 -181486 + AluSc SINE Alu 1 298 -11 2354 157 56 173 chr12 144101004 144101176 -181313 + L1MD2 LINE L1 5383 5573 -855 824 134 0 0 chr12 144101176 144101295 -181194 + AluY SINE Alu 178 296 -15 2319 91 7 0 chr12 144101305 144101601 -180888 + AluSg1 SINE Alu 1 298 -11 2354 157 56 173 chr12 144101601 144102115 -180374 + L1MD2 LINE L1 5583 6103 -325 2006 228 45 19 chr12 144102107 144102678 -179811 + L1MEc LINE L1 4506 5091 -1124 * 2225 110 7 7 chr12 144102950 144103251 -179238 + AluSq SINE Alu 2 302 -11 2336 90 0 3 chr12 144103255 144103555 -178934 + AluSp SINE Alu 1 299 -14 230 260 40 51 chr12 144103672 144103798 -178691 + L1MEc LINE L1 2120 2245 -4151 2587 69 0 0 chr12 144103798 144104103 -178386 - AluY SINE Alu -6 305 1 230 260 40 51 chr12 144104103 144104153 -178336 + L1MEc LINE L1 2245 2294 -4102 371 325 65 20 chr12 144104256 144104502 -177987 + L1MEc LINE L1 2404 2660 -3555 675 86 32 0 chr12 144104512 144104605 -177884 + THE1B LTR MaLR 1 96 -268 2035 130 23 34 chr12 144104605 144104959 -177530 + THE1A LTR MaLR 6 355 0 229 283 139 25 chr12 144105017 144105261 -177228 + L1MEc LINE L1 3022 3293 -2922 2146 120 0 3 chr12 144105261 144105561 -176928 + AluSg SINE Alu 1 299 -11 2158 242 0 0 chr12 144105602 144106086 -176403 + L1M4 LINE L1 4667 5150 -996 1203 123 0 11 chr12 144106087 144106266 -176223 + AluSp SINE Alu 122 298 -15 2310 74 0 55 chr12 144106267 144106579 -175910 + AluSg SINE Alu 1 295 -15 788 162 22 104 chr12 144106579 144106801 -175688 + L1MC2 LINE L1 6136 6339 -5 1783 142 69 0 chr12 144106845 144107119 -175370 + AluJo SINE Alu 5 297 -15 1939 62 78 88 chr12 144108523 144108829 -173660 + AluSg SINE Alu 1 303 -7 1540 69 5 0 chr12 144108830 144109033 -173456 + L1PA7 LINE L1 5950 6153 -1 1749 150 0 0 chr12 144109656 144109923 -172566 - AluJo SINE Alu -44 268 2 874 142 62 12 chr12 144110445 144110607 -171882 + FRAM SINE Alu 1 169 -7 330 278 192 0 chr12 144110662 144110896 -171593 - L1M4 LINE L1 -1392 4754 4476 203 122 0 24 chr12 144110916 144110957 -171532 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 1409 186 7 11 chr12 144110958 144111243 -171246 - AluSx SINE Alu -28 284 1 1233 96 0 0 chr12 144111824 144111980 -170509 - AluSg1 SINE Alu -153 156 1 2449 55 0 3 chr12 144111996 144112289 -170200 - AluY SINE Alu 0 311 20 1801 104 26 0 chr12 144112289 144112558 -169931 - L1M1 LINE L1 -523 5781 5506 2330 107 0 3 chr12 144112968 144113278 -169211 + AluSc SINE Alu 1 309 0 2263 100 0 10 chr12 144113308 144113608 -168881 + AluSx SINE Alu 1 297 -15 433 134 0 0 chr12 144113631 144113698 -168791 + MER41A LTR ERV1 400 466 -88 198 0 0 0 chr12 144113700 144113722 -168767 + (A)n Simple_repeat Simple_repeat 1 22 0 1374 96 0 14 chr12 144113726 144113966 -168523 + AluSx SINE Alu 27 298 -14 2312 103 3 0 chr12 144113967 144114269 -168220 + AluSp SINE Alu 1 303 -10 2076 102 3 11 chr12 144114324 144114608 -167881 - AluSc SINE Alu -13 296 15 1588 179 27 7 chr12 144114847 144115143 -167346 - AluJb SINE Alu -6 306 5 634 170 28 0 chr12 144115475 144115581 -166908 - FLAM_A SINE Alu -30 112 4 252 299 198 6 chr12 144115686 144115843 -166646 - L2 LINE L2 -15 3298 3112 301 248 214 0 chr12 144116081 144116226 -166263 + L1MC/D LINE L1 5679 5854 -1954 2184 93 33 3 chr12 144116246 144116546 -165943 + AluSp SINE Alu 1 309 -4 216 0 0 0 chr12 144116741 144116765 -165724 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 365 260 10 19 chr12 144116765 144116869 -165620 - L2 LINE L2 -611 2703 2601 1257 161 88 0 chr12 144116908 144117125 -165364 - MER46A DNA MER2_type 0 236 1 2298 97 0 0 chr12 144117245 144117533 -164956 - AluY SINE Alu -23 288 1 437 303 105 53 chr12 144117824 144118329 -164160 + L2 LINE L2 234 764 -2550 254 307 104 51 chr12 144118764 144119079 -163410 + L2 LINE L2 1646 1988 -1326 2213 106 17 0 chr12 144119079 144119372 -163117 - AluSc SINE Alu -11 298 1 254 307 104 51 chr12 144119372 144119450 -163039 + L2 LINE L2 1988 2060 -1254 207 297 144 0 chr12 144119531 144119649 -162840 + L2 LINE L2 2211 2345 -969 1567 184 30 26 chr12 144120069 144120373 -162116 + AluJo SINE Alu 1 305 -7 2284 104 3 0 chr12 144120393 144120691 -161798 + AluSx SINE Alu 1 299 -13 239 214 73 56 chr12 144121098 144121276 -161213 + L1M4 LINE L1 2731 2911 -3235 1189 103 134 0 chr12 144123677 144123871 -158618 + L1PA10 LINE L1 5939 6158 -10 337 280 0 0 chr12 144124390 144124465 -158024 + L2 LINE L2 3218 3292 -21 1266 201 74 14 chr12 144124574 144124858 -157631 + AluJo SINE Alu 1 301 -11 234 0 0 0 chr12 144124866 144124892 -157597 + (CAA)n Simple_repeat Simple_repeat 2 27 0 342 350 140 4 chr12 144125219 144125462 -157027 + L1M4 LINE L1 4731 5006 -1140 297 320 34 35 chr12 144125477 144125845 -156644 + L1M2 LINE L1 1231 1783 -915 772 203 77 11 chr12 144126003 144126185 -156304 - AluJb SINE Alu -33 279 86 466 223 62 0 chr12 144126429 144126541 -155948 - MER58 DNA MER1_type -2156 264 146 2107 114 50 0 chr12 144127404 144127702 -154787 + AluSq SINE Alu 1 313 0 976 77 0 0 chr12 144130410 144130527 -151962 + AluSq SINE Alu 133 249 -64 268 317 248 13 chr12 144130527 144130676 -151813 - L2 LINE L2 -368 2946 2833 2056 136 7 0 chr12 144130676 144130970 -151519 - AluJb SINE Alu -16 296 1 268 317 248 13 chr12 144130970 144131115 -151374 - L2 LINE L2 -481 2833 2723 2007 152 86 37 chr12 144131115 144131477 -151012 + MSTA LTR MaLR 1 387 -41 2640 59 0 0 chr12 144131477 144131784 -150705 - AluY SINE Alu -4 307 1 2007 152 86 37 chr12 144131784 144131829 -150660 + MSTA LTR MaLR 387 428 0 268 317 248 13 chr12 144131829 144131924 -150565 - L2 LINE L2 -591 2723 2464 2055 128 30 0 chr12 144133396 144133694 -148795 + AluSg SINE Alu 2 308 -2 262 188 168 89 chr12 144134046 144134147 -148342 - MLT1J LTR MaLR -160 351 243 1087 214 122 52 chr12 144134360 144134729 -147760 - MSTD LTR MaLR 0 396 2 2257 112 0 0 chr12 144134778 144135081 -147408 + AluSg SINE Alu 1 303 -7 279 294 17 8 chr12 144135377 144135496 -146993 + HAL1 LINE L1 1553 1672 -835 1625 193 7 0 chr12 144135503 144135788 -146701 + AluJo SINE Alu 9 295 -17 2522 56 7 0 chr12 144136726 144137030 -145459 + AluY SINE Alu 1 306 -5 229 196 39 0 chr12 144137063 144137114 -145375 - MLT1G LTR MaLR 0 595 543 2202 107 7 0 chr12 144137151 144137442 -145047 + AluSg1 SINE Alu 1 293 -16 267 250 0 16 chr12 144137447 144137511 -144978 - MLT1G LTR MaLR -67 488 426 735 217 29 80 chr12 144137595 144137754 -144735 - MLT1G LTR MaLR -314 276 181 865 154 0 22 chr12 144137754 144137890 -144599 - FLAM_C SINE Alu 0 133 1 735 217 29 80 chr12 144137890 144138060 -144429 - MLT1G LTR MaLR -409 181 4 408 288 61 70 chr12 144138073 144138407 -144082 - MLT1G-int LTR MaLR -20 1715 1109 316 267 23 23 chr12 144138956 144139042 -143447 + L1MC4 LINE L1 6635 6720 -1322 2230 127 0 0 chr12 144139167 144139466 -143023 - AluSx SINE Alu -13 299 1 420 198 63 24 chr12 144139485 144139611 -142878 - L1PB4 LINE L1 -3 6153 6026 2079 236 92 3 chr12 144139871 144140117 -142372 - L1MDa LINE L1 -4036 2504 2281 896 150 0 0 chr12 144140117 144140250 -142239 - FLAM_C SINE Alu 0 133 1 2079 236 92 3 chr12 144140250 144140699 -141790 - L1MDa LINE L1 -4259 2281 1747 829 204 7 7 chr12 144140780 144140951 -141538 + AluJb SINE Alu 136 306 0 1749 84 0 27 chr12 144140954 144141179 -141310 + AluSc SINE Alu 69 287 -22 285 181 24 12 chr12 144141302 144141385 -141104 + (TA)n Simple_repeat Simple_repeat 2 85 0 1258 192 31 0 chr12 144141494 144141755 -140734 - L1ME LINE L1 -463 5703 5435 * 1397 236 23 39 chr12 144141753 144142186 -140303 + L1ME2 LINE L1 5705 6130 -34 688 201 8 15 chr12 144142187 144142321 -140168 + FLAM_A SINE Alu 1 133 0 2188 114 3 0 chr12 144142345 144142634 -139855 - AluSx SINE Alu -22 290 1 1531 156 51 0 chr12 144142693 144142949 -139540 + AluJb SINE Alu 9 277 -35 1810 142 69 0 chr12 144143865 144144139 -138350 - AluJo SINE Alu -15 297 5 689 194 9 92 chr12 144144183 144144400 -138089 - L1MC2 LINE L1 -5 6339 6141 1349 108 0 11 chr12 144144400 144144585 -137904 - AluSg/x SINE Alu -8 302 120 2005 249 0 2 chr12 144144586 144145071 -137418 - L1ME LINE L1 -996 5150 4667 1863 155 0 3 chr12 144145112 144145409 -137080 - AluSg SINE Alu -11 299 4 2040 130 10 3 chr12 144146125 144146426 -136063 - AluSx SINE Alu -9 303 1 650 259 42 82 chr12 144146442 144146628 -135861 + LTR23-int LTR ERV1 307 474 -4649 2200 102 3 10 chr12 144146628 144146932 -135557 - AluSx SINE Alu -10 302 1 650 259 42 82 chr12 144146932 144147100 -135389 + LTR23-int LTR ERV1 474 647 -4476 2119 124 10 0 chr12 144147484 144147775 -134714 + AluSq SINE Alu 1 294 -19 293 171 17 120 chr12 144148223 144148340 -134149 + MER83 LTR ERV1 1 105 -343 271 217 33 0 chr12 144149174 144149234 -133255 + MIR SINE MIR 155 216 -46 1388 209 29 71 chr12 144149416 144149479 -133010 - MLT1A2 LTR MaLR 0 374 310 2344 73 0 7 chr12 144149479 144149809 -132680 - AluY SINE Alu 0 328 1 2149 134 0 10 chr12 144149818 144150132 -132357 - AluSx SINE Alu -1 311 1 1388 209 29 71 chr12 144150132 144150439 -132050 - MLT1A2 LTR MaLR -72 302 9 33 0 0 0 chr12 144150474 144150507 -131982 + AT_rich Low_complexity Low_complexity 1 33 0 2246 90 17 3 chr12 144150510 144150800 -131689 - AluSp SINE Alu -19 294 1 1948 145 0 24 chr12 144150807 144151104 -131385 - AluSx SINE Alu -20 292 3 2161 82 4 7 chr12 144151224 144151493 -130996 - AluY SINE Alu -43 268 1 2274 104 7 0 chr12 144151493 144151791 -130698 - AluSq SINE Alu -13 300 1 1817 180 14 0 chr12 144151935 144152230 -130259 + AluJo SINE Alu 1 299 -13 2397 221 92 37 chr12 144152436 144153048 -129441 - L1ME1 LINE L1 -4 6162 5585 2495 59 0 10 chr12 144153048 144153351 -129138 - AluSc SINE Alu -9 300 1 2397 221 92 37 chr12 144153351 144153658 -128831 - L1ME1 LINE L1 -581 5585 5296 2041 119 34 3 chr12 144153658 144153952 -128537 - AluSx SINE Alu -9 303 1 2247 98 0 0 chr12 144153956 144154252 -128237 - AluSg SINE Alu -14 296 1 2378 80 0 7 chr12 144154262 144154562 -127927 - AluY SINE Alu -13 298 1 2397 221 92 37 chr12 144154562 144154723 -127766 - L1ME1 LINE L1 -880 5286 5004 918 243 66 4 chr12 144154722 144154981 -127508 - L1ME1 LINE L1 -1347 4799 4525 * 2466 72 0 7 chr12 144155247 144155552 -126937 + AluSc SINE Alu 1 303 -6 2274 93 30 3 chr12 144155642 144155944 -126545 + AluSg SINE Alu 1 310 0 2084 119 0 7 chr12 144156195 144156505 -125984 + AluSx SINE Alu 1 308 0 1856 131 10 24 chr12 144156508 144156799 -125690 - AluJb SINE Alu -11 301 15 1520 133 8 0 chr12 144156808 144157049 -125440 + HERVL LTR ERVL 3051 3293 -2361 946 200 0 16 chr12 144157644 144157829 -124660 + HERVL LTR ERVL 3321 3502 -2262 819 234 0 12 chr12 144158231 144158398 -124091 + MER41D LTR ERV1 393 557 0 566 182 10 0 chr12 144158402 144158501 -123988 + HERVL LTR ERVL 4511 4610 -1154 783 172 15 0 chr12 144158675 144158809 -123680 - MER4E LTR ERV1 0 779 644 1849 97 0 16 chr12 144158809 144159056 -123433 - AluSg1 SINE Alu -8 301 59 3491 60 4 11 chr12 144159058 144159509 -122980 - LTR7 LTR ERV1 -2 448 1 7900 84 7 10 chr12 144159509 144160626 -121863 - HERVH LTR ERV1 0 7713 6600 491 125 12 0 chr12 144160626 144160706 -121783 - HERVH LTR ERV1 -1033 6680 6600 502 113 12 0 chr12 144160706 144160786 -121703 - HERVH LTR ERV1 -1033 6680 6600 495 148 0 0 chr12 144160786 144160867 -121622 - HERVH LTR ERV1 -1033 6680 6600 496 161 0 0 chr12 144160867 144160948 -121541 - HERVH LTR ERV1 -1033 6680 6600 498 148 0 0 chr12 144160948 144161029 -121460 - HERVH LTR ERV1 -1033 6680 6600 463 150 12 0 chr12 144161029 144161109 -121380 - HERVH LTR ERV1 -1033 6680 6600 526 123 0 0 chr12 144161109 144161190 -121299 - HERVH LTR ERV1 -1033 6680 6600 512 148 0 0 chr12 144161190 144161271 -121218 - HERVH LTR ERV1 -1033 6680 6600 430 175 12 0 chr12 144161271 144161351 -121138 - HERVH LTR ERV1 -1033 6680 6600 499 136 0 0 chr12 144161351 144161432 -121057 - HERVH LTR ERV1 -1033 6680 6600 489 161 0 0 chr12 144161432 144161513 -120976 - HERVH LTR ERV1 -1033 6680 6600 489 161 0 0 chr12 144161513 144161594 -120895 - HERVH LTR ERV1 -1033 6680 6600 503 136 0 0 chr12 144161594 144161675 -120814 - HERVH LTR ERV1 -1033 6680 6600 421 188 12 0 chr12 144161675 144161755 -120734 - HERVH LTR ERV1 -1033 6680 6600 479 161 0 0 chr12 144161755 144161836 -120653 - HERVH LTR ERV1 -1033 6680 6600 506 148 0 0 chr12 144161836 144161917 -120572 - HERVH LTR ERV1 -1033 6680 6600 504 136 0 0 chr12 144161917 144161998 -120491 - HERVH LTR ERV1 -1033 6680 6600 398 192 13 0 chr12 144162000 144162078 -120411 - HERVH LTR ERV1 -1035 6678 6600 508 136 0 0 chr12 144162078 144162159 -120330 - HERVH LTR ERV1 -1033 6680 6600 515 136 0 0 chr12 144162159 144162240 -120249 - HERVH LTR ERV1 -1033 6680 6600 515 136 0 0 chr12 144162240 144162321 -120168 - HERVH LTR ERV1 -1033 6680 6600 504 136 0 0 chr12 144162321 144162402 -120087 - HERVH LTR ERV1 -1033 6680 6600 398 192 13 0 chr12 144162404 144162482 -120007 - HERVH LTR ERV1 -1035 6678 6600 2930 78 0 0 chr12 144162482 144162880 -119609 - HERVH LTR ERV1 -1033 6680 6283 * 15181 168 21 33 chr12 144162874 144163042 -119447 - HERVH LTR ERV1 -2372 4157 3989 2565 81 3 0 chr12 144163042 144163351 -119138 + AluSp SINE Alu 2 311 -2 15181 168 21 33 chr12 144163351 144167586 -114903 - HERVH LTR ERV1 -2540 3989 1 3371 76 0 24 chr12 144167588 144168047 -114442 - LTR7 LTR ERV1 -2 448 1 473 97 0 0 chr12 144168047 144168109 -114380 - Alu SINE Alu -255 63 2 2837 159 105 10 chr12 144168133 144168249 -114240 - MER4D LTR ERV1 -247 656 552 1463 154 95 21 chr12 144168249 144168534 -113955 - AluJb SINE Alu -6 306 1 2837 159 105 10 chr12 144168534 144169016 -113473 - MER4D LTR ERV1 -351 552 1 195 186 0 0 chr12 144169041 144169084 -113405 + (TA)n Simple_repeat Simple_repeat 2 44 0 626 167 125 0 chr12 144169108 144169228 -113261 - AluJo SINE Alu -175 137 3 210 226 30 61 chr12 144169997 144170161 -112328 + G-rich Low_complexity Low_complexity 5 163 0 220 196 0 20 chr12 144170349 144170400 -112089 + G-rich Low_complexity Low_complexity 4 53 0 826 228 73 15 chr12 144170622 144170881 -111608 + L1M4 LINE L1 2777 3050 -3096 21 0 0 0 chr12 144170893 144170914 -111575 + AT_rich Low_complexity Low_complexity 1 21 0 2023 146 7 3 chr12 144171219 144171528 -110961 - AluSx SINE Alu -2 310 1 1531 116 0 0 chr12 144171819 144172034 -110455 - AluSg SINE Alu -95 215 1 2037 71 0 4 chr12 144172044 144172297 -110192 - AluY SINE Alu -13 298 47 2228 117 0 0 chr12 144172393 144172692 -109797 - AluSg SINE Alu -11 299 1 2559 61 0 0 chr12 144172779 144173076 -109413 + AluY SINE Alu 1 297 -14 1729 162 60 0 chr12 144173469 144173784 -108705 - MER7A DNA MER2_type 0 346 15 2232 111 7 0 chr12 144173788 144174086 -108403 + AluSp SINE Alu 3 302 -11 927 176 97 5 chr12 144174356 144174572 -107917 - MER46A DNA MER2_type 0 236 1 324 265 161 24 chr12 144174608 144174680 -107809 - L1ME4a LINE L1 -161 5960 5899 2256 110 7 3 chr12 144174680 144174988 -107501 - AluSx SINE Alu -3 309 1 324 265 161 24 chr12 144174988 144175206 -107283 - L1ME4a LINE L1 -222 5899 5630 1896 111 68 4 chr12 144175241 144175521 -106968 - AluSx SINE Alu -14 298 1 990 184 33 14 chr12 144176635 144176847 -105642 - MLT1D LTR MaLR -5 500 285 278 326 0 0 chr12 144176961 144177053 -105436 - L2 LINE L2 -528 2786 2695 324 212 15 0 chr12 144177397 144177463 -105026 - Tigger2 DNA MER2_type -2650 68 2 427 289 108 6 chr12 144177497 144177663 -104826 + MER58A DNA MER1_type 40 222 -2 183 261 123 51 chr12 144177765 144177903 -104586 + L2 LINE L2 2935 3082 -190 2380 98 0 0 chr12 144179096 144179391 -103098 - AluSp SINE Alu -18 295 1 28 0 0 0 chr12 144179396 144179424 -103065 + AT_rich Low_complexity Low_complexity 1 28 0 2106 108 0 14 chr12 144179424 144179711 -102778 - AluSq SINE Alu -30 283 1 881 110 0 0 chr12 144180210 144180328 -102161 - AluSg/x SINE Alu -19 291 174 2262 79 0 44 chr12 144180329 144180499 -101990 - AluSq SINE Alu -10 303 127 243 0 0 0 chr12 144180499 144180526 -101963 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2376 71 0 0 chr12 144180526 144180809 -101680 - AluY SINE Alu -27 284 2 2262 79 0 44 chr12 144180809 144180954 -101535 - AluSq SINE Alu -184 129 1 512 208 18 118 chr12 144181475 144181696 -100793 - L1MB8 LINE L1 -9 6169 5971 329 194 0 32 chr12 144181712 144181774 -100715 - L1MB8 LINE L1 -148 6030 5971 329 194 0 32 chr12 144181751 144181813 -100676 - L1MB8 LINE L1 -148 6030 5971 226 177 0 32 chr12 144181829 144181891 -100598 - L1MB8 LINE L1 -148 6030 5971 318 210 0 32 chr12 144181907 144181969 -100520 - L1MB8 LINE L1 -148 6030 5971 329 194 0 32 chr12 144181985 144182047 -100442 - L1MB8 LINE L1 -148 6030 5971 475 197 43 0 chr12 144182063 144182180 -100309 - L1MB7 LINE L1 -154 6030 5909 1374 61 0 0 chr12 144182186 144182350 -100139 - AluY SINE Alu -15 296 133 2400 65 6 40 chr12 144182350 144182671 -99818 - AluY SINE Alu -1 310 1 296 130 0 0 chr12 144182671 144182717 -99772 - L1MB7 LINE L1 -285 5893 5848 21 0 0 0 chr12 144182906 144182927 -99562 + AT_rich Low_complexity Low_complexity 1 21 0 1559 81 47 14 chr12 144183829 144184040 -98449 - AluSg/x SINE Alu -12 300 83 2024 142 0 44 chr12 144184909 144185227 -97262 + AluJb SINE Alu 3 306 -6 1844 109 20 61 chr12 144185229 144185523 -96966 + AluSx SINE Alu 22 303 -9 22 56 0 0 chr12 144186052 144186088 -96401 + AT_rich Low_complexity Low_complexity 1 36 0 2306 116 3 0 chr12 144186093 144186404 -96085 + AluSx SINE Alu 1 312 0 186 268 0 0 chr12 144186463 144186504 -95985 - L2 LINE L2 -21 3292 3252 1683 150 4 18 chr12 144186833 144187113 -95376 + AluJo SINE Alu 17 292 -20 1994 132 10 0 chr12 144187345 144187655 -94834 - AluSq SINE Alu 0 313 1 2085 62 0 0 chr12 144188032 144188289 -94200 + AluY SINE Alu 51 307 -4 2062 85 39 3 chr12 144188298 144188580 -93909 + AluY SINE Alu 1 292 -19 1369 169 4 43 chr12 144188613 144188868 -93621 - AluJo SINE Alu -67 245 1 2233 97 0 7 chr12 144188879 144189189 -93300 - AluSq SINE Alu -5 308 1 738 206 16 0 chr12 144189998 144190124 -92365 + AluJo/FLAM SINE Alu 1 128 -174 2151 127 0 0 chr12 144190127 144190434 -92055 + AluSq SINE Alu 1 307 -6 863 249 158 51 chr12 144190576 144191126 -91363 + HAL1 LINE L1 1836 2458 -49 1670 177 3 14 chr12 144191126 144191420 -91069 - AluJb SINE Alu -21 291 1 863 249 158 51 chr12 144191420 144191476 -91013 + HAL1 LINE L1 2458 2507 0 2360 62 0 0 chr12 144191534 144191824 -90665 + AluY SINE Alu 5 294 -17 674 222 7 0 chr12 144192263 144192398 -90091 - AluSc SINE Alu -55 254 119 2128 113 3 10 chr12 144192426 144192737 -89752 - AluSx SINE Alu -3 309 1 298 125 36 0 chr12 144192738 144192794 -89695 - AluJb SINE Alu -160 142 85 2131 116 0 10 chr12 144192794 144193105 -89384 - AluSx SINE Alu -4 308 1 2223 99 0 7 chr12 144195493 144195795 -86694 - AluSc SINE Alu -9 300 1 1756 85 0 25 chr12 144195795 144195908 -86581 - AluSx SINE Alu -67 245 131 2139 141 0 0 chr12 144195908 144196220 -86269 - AluSx SINE Alu 0 312 1 1756 85 0 25 chr12 144196220 144196342 -86147 - AluSx SINE Alu -181 131 16 2203 82 0 0 chr12 144196349 144196640 -85849 - AluY SINE Alu -5 306 16 2281 63 10 26 chr12 144198892 144199194 -83295 + AluY SINE Alu 1 297 -14 1882 155 0 0 chr12 144199889 144200180 -82309 + AluJb SINE Alu 1 291 -21 306 0 0 0 chr12 144200181 144200215 -82274 + (TA)n Simple_repeat Simple_repeat 2 35 0 1870 90 0 0 chr12 144200963 144201234 -81255 + AluY SINE Alu 37 307 0 2023 108 28 0 chr12 144201292 144201580 -80909 + AluSx SINE Alu 1 296 -16 1790 160 3 10 chr12 144201931 144202237 -80252 + AluJb SINE Alu 1 304 -8 2065 133 3 0 chr12 144204272 144204581 -77908 - AluSq SINE Alu -3 310 1 2446 45 0 26 chr12 144204716 144205024 -77465 + AluY SINE Alu 1 300 -11 1995 140 27 9 chr12 144205086 144205422 -77067 - LTR3b LTR ERVK 0 500 159 1089 141 0 0 chr12 144205635 144205798 -76691 - AluJb SINE Alu -29 283 121 2107 112 3 16 chr12 144205799 144206112 -76377 - AluSg SINE Alu -1 309 1 22 0 0 0 chr12 144206323 144206345 -76144 + AT_rich Low_complexity Low_complexity 1 22 0 2077 103 0 7 chr12 144206353 144206643 -75846 + AluSx SINE Alu 1 288 -24 2165 68 0 7 chr12 144206702 144206997 -75492 + AluY SINE Alu 1 293 -18 1970 79 75 4 chr12 144207324 144207603 -74886 - AluSq SINE Alu -14 299 1 995 144 0 12 chr12 144207831 144207998 -74491 - AluSg/x SINE Alu -1 309 145 2044 118 7 10 chr12 144209156 144209462 -73027 - AluSx SINE Alu -7 305 1 22 0 0 0 chr12 144210277 144210299 -72190 + AT_rich Low_complexity Low_complexity 1 22 0 643 272 142 53 chr12 144213661 144213984 -68505 - MER63B DNA MER1_type -84 352 1 263 176 135 0 chr12 144213998 144214072 -68417 + MLT1H1 LTR MaLR 466 549 -6 190 321 189 0 chr12 144214294 144214400 -68089 + L2 LINE L2 3119 3244 -69 1387 227 30 0 chr12 144215538 144215838 -66651 - MLT1B LTR MaLR -7 383 75 536 169 0 0 chr12 144215823 144215912 -66577 + U6 snRNA snRNA 17 105 -2 * 286 179 18 0 chr12 144215904 144215960 -66529 - MLT1B LTR MaLR -300 90 34 * 1368 239 92 46 chr12 144216069 144216271 -66218 + MLT1D LTR MaLR 2 193 -312 2504 40 0 7 chr12 144216271 144216575 -65914 + AluY SINE Alu 1 302 -9 1368 239 92 46 chr12 144216575 144216848 -65641 + MLT1D LTR MaLR 193 499 -6 273 299 64 59 chr12 144217026 144217390 -65099 + L2 LINE L2 2274 3065 -248 247 280 291 24 chr12 144217391 144217446 -65043 + L2 LINE L2 2942 2981 -332 1867 148 26 3 chr12 144217446 144217750 -64739 - AluJb SINE Alu 0 312 2 247 280 291 24 chr12 144217750 144217983 -64506 + L2 LINE L2 2981 3307 -6 1362 233 93 5 chr12 144218143 144218539 -63950 + L1MB7 LINE L1 5739 6175 -9 1265 176 46 0 chr12 144218664 144218925 -63564 - L1MA3 LINE L1 0 6305 6033 720 239 117 37 chr12 144218987 144219309 -63180 - L1MD2 LINE L1 -67 6099 5766 1749 213 75 65 chr12 144219439 144219769 -62720 - L1MD2 LINE L1 -448 5794 5469 2188 122 0 0 chr12 144219769 144220072 -62417 - AluSx SINE Alu -9 303 1 1749 213 75 65 chr12 144220072 144220211 -62278 - L1MD2 LINE L1 -773 5469 5333 2061 130 3 0 chr12 144220211 144220503 -61986 - AluSx SINE Alu -17 295 3 1749 213 75 65 chr12 144220503 144220653 -61836 - L1MD2 LINE L1 -909 5333 5186 2091 99 3 10 chr12 144220653 144220946 -61543 - AluSc SINE Alu -18 291 1 2026 80 42 7 chr12 144220946 144221231 -61258 - AluSx SINE Alu -14 298 3 1749 213 75 65 chr12 144221231 144221409 -61080 - L1MD2 LINE L1 -1055 5187 4973 549 285 120 48 chr12 144221404 144221848 -60641 + L1M4 LINE L1 4206 4674 -1472 * 201 330 128 0 chr12 144223129 144223238 -59251 - L2 LINE L2 -281 3032 2910 816 144 0 15 chr12 144223367 144223499 -58990 - FLAM_C SINE Alu 0 133 4 296 262 113 36 chr12 144223796 144223964 -58525 - MIR SINE MIR -73 189 9 1995 151 3 0 chr12 144227175 144227487 -55002 - AluSq SINE Alu 0 313 1 2273 74 0 7 chr12 144227488 144227784 -54705 - AluSq SINE Alu -19 294 1 2178 80 0 13 chr12 144228350 144228649 -53840 - AluSx SINE Alu -17 295 1 25 0 0 0 chr12 144228650 144228675 -53814 + AT_rich Low_complexity Low_complexity 1 25 0 2413 58 0 13 chr12 144229410 144229719 -52770 - AluY SINE Alu -6 305 1 2163 108 0 0 chr12 144229867 144230163 -52326 - AluSp SINE Alu -17 296 1 2293 98 0 0 chr12 144230164 144230470 -52019 - AluSx SINE Alu -6 306 1 1343 189 12 64 chr12 144230915 144231098 -51391 - AluJo SINE Alu -1 311 151 2115 87 14 0 chr12 144231098 144231386 -51103 - AluSp SINE Alu -17 296 5 1343 189 12 64 chr12 144231386 144231530 -50959 - AluJo SINE Alu -161 151 1 2312 78 0 0 chr12 144231747 144232040 -50449 - AluY SINE Alu -18 293 1 1818 139 17 3 chr12 144232734 144233028 -49461 + AluSg SINE Alu 1 298 -12 2170 114 0 0 chr12 144235066 144235373 -47116 - AluY SINE Alu -4 307 1 1692 166 7 17 chr12 144235375 144235676 -46813 - AluJb SINE Alu -14 298 1 2230 97 3 0 chr12 144236967 144237266 -45223 + AluSp SINE Alu 2 301 -12 2514 56 0 0 chr12 144237266 144237568 -44921 + AluY SINE Alu 1 302 -9 4160 136 240 9 chr12 144238162 144239051 -43438 - Tigger1 DNA MER2_type -7 2411 1318 25 0 0 0 chr12 144239051 144239076 -43413 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr12 144239076 144239097 -43392 + (TG)n Simple_repeat Simple_repeat 2 22 0 1152 177 12 138 chr12 144239098 144239425 -43064 - AluJo SINE Alu -16 286 1 1973 112 49 3 chr12 144239528 144239813 -42676 + AluSx SINE Alu 1 298 -14 7583 53 69 2 chr12 144239976 144240268 -42221 - LTR13 LTR ERVK 0 1007 736 186 43 0 0 chr12 144240268 144240291 -42198 + (GA)n Simple_repeat Simple_repeat 2 24 0 7583 53 69 2 chr12 144240291 144240942 -41547 - LTR13 LTR ERVK -271 736 1 2101 117 0 10 chr12 144241027 144241327 -41162 - AluSx SINE Alu -15 297 1 7676 70 11 39 chr12 144241404 144242440 -40049 + LTR13 LTR ERVK 1 1007 0 241 310 31 8 chr12 144243419 144243548 -38941 + (CGGGG)n Simple_repeat Simple_repeat 2 133 0 475 300 124 26 chr12 144247981 144248187 -34302 - MER82 DNA MER2_type -83 570 330 2261 64 3 0 chr12 144248187 144248516 -33973 - AluSp SINE Alu 0 330 1 475 300 124 26 chr12 144248516 144248575 -33914 - MER82 DNA MER2_type -323 330 278 1185 173 21 21 chr12 144248634 144248877 -33612 - AluJo SINE Alu -1 311 69 813 273 23 16 chr12 144248944 144249200 -33289 - MER82 DNA MER2_type -382 271 14 1959 151 7 0 chr12 144250307 144250611 -31878 - AluJb SINE Alu -6 306 1 26 30 0 0 chr12 144250650 144250683 -31806 + AT_rich Low_complexity Low_complexity 1 33 0 2115 128 0 0 chr12 144250771 144251076 -31413 - AluSg SINE Alu -5 305 1 1984 146 0 22 chr12 144251249 144251564 -30925 + AluSx SINE Alu 1 308 -4 1425 165 55 22 chr12 144251639 144251912 -30577 - AluJo SINE Alu -22 290 9 308 286 79 14 chr12 144253520 144253563 -28926 + MIR SINE MIR 78 117 -145 2167 95 0 3 chr12 144253563 144253848 -28641 - AluSq SINE Alu -16 297 14 308 286 79 14 chr12 144253848 144253944 -28545 + MIR SINE MIR 117 226 -36 2117 126 10 0 chr12 144255501 144255810 -26679 - AluSx SINE Alu 0 312 1 317 82 0 0 chr12 144255810 144255859 -26630 - AluSg/x SINE Alu -167 133 85 1238 190 5 5 chr12 144255859 144256080 -26409 - AluJo SINE Alu -91 221 1 2225 96 0 0 chr12 144256082 144256373 -26116 - AluSc SINE Alu -8 301 11 887 118 0 22 chr12 144256933 144257069 -25420 - FLAM_C SINE Alu -2 141 9 243 197 33 0 chr12 144258712 144258773 -23716 - MER5A DNA MER1_type -80 109 47 2281 67 6 19 chr12 144260209 144260524 -21965 - AluY SINE Alu 0 311 1 380 283 122 22 chr12 144260648 144260828 -21661 + HsTC2c DNA Tc2 166 363 -366 2261 63 0 11 chr12 144260934 144261240 -21249 - AluY SINE Alu 0 303 1 1879 118 10 7 chr12 144261250 144261538 -20951 - AluSx SINE Alu -23 289 1 286 75 0 0 chr12 144261556 144261596 -20893 - Alu SINE Alu -262 40 1 450 276 217 0 chr12 144261649 144261870 -20619 + HsTC2c DNA Tc2 457 725 -4 219 256 33 0 chr12 144262324 144262414 -20075 + (CTGGGG)n Simple_repeat Simple_repeat 1 93 0 2347 88 0 0 chr12 144264038 144264335 -18154 + AluSg SINE Alu 1 297 -13 1530 186 14 24 chr12 144265677 144265967 -16522 + AluJb SINE Alu 1 287 -25 282 283 139 16 chr12 144266127 144266314 -16175 + MIR SINE MIR 20 229 -33 398 226 40 20 chr12 144266352 144266659 -15830 + (TG)n Simple_repeat Simple_repeat 1 313 0 2205 86 7 0 chr12 144267416 144267706 -14783 + AluSg SINE Alu 2 293 -17 1580 167 102 0 chr12 144268077 144268352 -14137 - AluSg SINE Alu -7 303 1 2208 113 3 0 chr12 144268384 144268695 -13794 - AluSx SINE Alu 0 312 1 199 250 47 16 chr12 144269472 144269536 -12953 - MIR3 SINE MIR -138 70 5 1893 125 37 0 chr12 144269715 144270010 -12479 - AluY SINE Alu -5 306 1 648 161 12 123 chr12 144270012 144270174 -12315 - FRAM SINE Alu -17 159 16 205 326 34 7 chr12 144271049 144271196 -11293 + (TG)n Simple_repeat Simple_repeat 1 151 0 * 309 308 19 19 chr12 144271161 144271320 -11169 + (CGTG)n Simple_repeat Simple_repeat 1 159 0 * 329 274 24 18 chr12 144271221 144271385 -11104 + (TG)n Simple_repeat Simple_repeat 1 165 0 298 279 35 17 chr12 144271410 144271582 -10907 + (TG)n Simple_repeat Simple_repeat 1 175 0 2260 76 7 0 chr12 144271911 144272202 -10287 + AluSp SINE Alu 1 293 -20 1810 122 4 4 chr12 144272374 144272637 -9852 - AluSc SINE Alu -8 301 39 25 0 0 0 chr12 144272637 144272662 -9827 + AT_rich Low_complexity Low_complexity 1 25 0 1218 133 60 18 chr12 144272669 144272685 -9804 - AluJo SINE Alu 0 312 298 2399 58 10 13 chr12 144272685 144272997 -9492 - AluY SINE Alu 0 311 1 1218 133 60 18 chr12 144272997 144273198 -9291 - AluJo SINE Alu -14 298 86 524 154 0 4 chr12 144275561 144275699 -6790 + AluJ/FRAM SINE Alu 121 303 -9 671 182 136 0 chr12 144275699 144275853 -6636 + MER46A DNA MER2_type 44 218 -18 2280 100 0 0 chr12 144278718 144279028 -3461 - AluSx SINE Alu -2 310 1 2298 81 0 0 chr12 144280355 144280650 -1839 + AluSx SINE Alu 1 295 -17 2087 105 7 0 chr12 144281036 144281332 -1157 - AluSx SINE Alu -14 298 1